BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780925|ref|YP_003065338.1| bifunctional preprotein
translocase subunit SecD/SecF [Candidatus Liberibacter asiaticus str.
psy62]
         (833 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780925|ref|YP_003065338.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254040602|gb|ACT57398.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 833

 Score =  504 bits (1298), Expect = e-140,   Method: Composition-based stats.
 Identities = 833/833 (100%), Positives = 833/833 (100%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV
Sbjct: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ
Sbjct: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST
Sbjct: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ
Sbjct: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG
Sbjct: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS
Sbjct: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI
Sbjct: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF
Sbjct: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI
Sbjct: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES
Sbjct: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK
Sbjct: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL
Sbjct: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF
Sbjct: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI
Sbjct: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833


>gi|222084836|ref|YP_002543365.1| protein-export membrane protein SecD [Agrobacterium radiobacter
           K84]
 gi|221722284|gb|ACM25440.1| protein-export membrane protein SecD [Agrobacterium radiobacter
           K84]
          Length = 852

 Score =  500 bits (1286), Expect = e-139,   Method: Composition-based stats.
 Identities = 435/832 (52%), Positives = 599/832 (71%), Gaps = 4/832 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + WLV LYS+I  +G L+ALPN LPQS L + P+ +P +++ LGLDLRGGS+LVLEV
Sbjct: 1   MRTSRWLVALYSVIIVLGFLVALPNVLPQSTLSKIPNWLPHSQVPLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           DE D  NG LQ    + R  L+ + I   S+ +  ++I ++  D     +   ++     
Sbjct: 61  DEKDLTNGRLQSLQQDSRRVLRDKNILTRSIVRNGDQIVVTLTDPTQSGDAVTQLQTLAN 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S L+   + +L +      I++  S+  I   +  A++QS+E+IR+R+DQ+G++E T
Sbjct: 121 TITSGLSAG-QSDLTIAPNAGAITMSFSKAGIASNVDSAVQQSLEVIRKRVDQVGVAEPT 179

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQR+G +R+L+QLPG QDPSRLR+LLG+TAKMSFH +  N        GV  L+D  G  
Sbjct: 180 IQRVGPNRVLVQLPGAQDPSRLRELLGSTAKMSFHLLADNVDPNNPGPGVTILKDEQGQS 239

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y V D++E+SG  L  A  +FDP TH+P+V   FD  GA RF E+TR+N+GKP A+VLD 
Sbjct: 240 YPVLDRIELSGDRLTDARVSFDPNTHEPLVTFRFDSAGANRFAEITRENVGKPFAIVLDN 299

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VL+AP I + I  G  QISGNFT ++A  LAA+LRAG+LP KL ++EER VGADLG+D+
Sbjct: 300 KVLSAPNIREPITGGSGQISGNFTADSATTLAALLRAGALPAKLTVIEERTVGADLGADA 359

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I KG  + + G VL+  F+ VLYG WG++A+ ++ ++ ILT + L+L+GATLTLP IAGI
Sbjct: 360 IQKGIYSGLVGFVLVAAFIFVLYGAWGILANVALLIHTILTFSALTLVGATLTLPGIAGI 419

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VLGIGLAVD+N+L+NERIREE RK +  F ++D GF +AYSTI D N+TALIA  +LF+F
Sbjct: 420 VLGIGLAVDANVLINERIREETRKGRGAFAAIDNGFRKAYSTIIDGNMTALIAAAILFYF 479

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G G VRGFA+TMGL ++ISMFT+++ VR +MI I R +K+K ++I PL  F   P    I
Sbjct: 480 GSGPVRGFAVTMGLGLIISMFTSVAFVRVVMIAITRRRKLKVLNIRPLIPFS--PYDKHI 537

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
            FM+ARF+GV +S + SI S+ L    GLNYG+DF+GGIQ+ V      DLS  R  L +
Sbjct: 538 HFMKARFFGVTVSAILSIASVVLFIHPGLNYGVDFRGGIQMSVKTKDAADLSTFREGLNT 597

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           L +G+IS Q+F    + LVR Q Q G   AQT  +  +K +IT+I P +TI+ T+++GPK
Sbjct: 598 LGLGEISLQSFGDNNSILVRAQRQDGGEEAQTAAVTKLKAEITKIDPAATIEGTDVIGPK 657

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +S EL   GI+ V+I+++AML+YIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL
Sbjct: 658 VSGELAWAGILSVVIASLAMLVYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 717

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY  S+  RD+IDKSINETL RS+YT+  AF
Sbjct: 718 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLRDIIDKSINETLARSLYTNATAF 776

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++A+
Sbjct: 777 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAK 828


>gi|13471172|ref|NP_102741.1| bifunctional preprotein translocase subunit SecD/SecF
           [Mesorhizobium loti MAFF303099]
 gi|14021916|dbj|BAB48527.1| probable protein-export membrane protein [Mesorhizobium loti
           MAFF303099]
          Length = 849

 Score =  494 bits (1272), Expect = e-137,   Method: Composition-based stats.
 Identities = 321/833 (38%), Positives = 506/833 (60%), Gaps = 17/833 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + + +IL  +   I +++A PN  P S L + PS +PK +++LGLDL+GGSH++LE++++
Sbjct: 5   SRFKMILIWVAVAITVILAAPNLFPASTLAQLPSWVPKRQMTLGLDLQGGSHILLEMNQN 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D +   L+   DE+R+ L+   IG   +      + +   D    +     +      V 
Sbjct: 65  DLIKDRLETTRDEIRTLLRDAKIGYTGLAGTGRTLQVRITDPAQLDAAKKALKTLTDPVA 124

Query: 124 SKLNVDPKKNLLVTTTEKE--ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + L        +     +   +   ++   I    S A+ QS+E++ +R++++G +E  +
Sbjct: 125 AGLFSGGSIQEMSLDDSEPGLLKFTVTDAGIKYRTSTALAQSIEVVERRVNELGTTEPIV 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234
           QR G  RIL+Q+PG QDP RL+++LG TAK++F  V  +   +  + G           +
Sbjct: 185 QRQGDDRILVQVPGLQDPQRLKEILGQTAKLTFQMVDQSMPVQDALKGRPPAGSSVLYSQ 244

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           D     YL+E++V +SG +L  A A ++ + ++PVV   FD  GA RF + T  N+GK  
Sbjct: 245 DDPPVPYLIENRVIVSGENLVDAQATYNSQNNEPVVSFRFDSKGAARFGQATSQNVGKLF 304

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A++LD +V++AP I + I  G  QISGNFT ++A  LA +LRAG+LP  L ++EER VG 
Sbjct: 305 AIILDNQVISAPQIREPILGGTGQISGNFTAQSANDLAVLLRAGALPATLTVIEERTVGP 364

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG DSI+ G  A + G +L+V FM V YG  G +A+ ++ ++V + + LLSLLGATLTL
Sbjct: 365 GLGQDSIHAGKVAGIIGSILVVAFMFVAYGFLGFLANIALAVHVAMIVGLLSLLGATLTL 424

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL IG+AVDSN+L+ ERIREE R  +SV  ++D GFS+A +TI DSN+T+LIAT
Sbjct: 425 PGIAGIVLTIGMAVDSNVLIYERIREERRAGRSVIQAIDTGFSKALATIVDSNVTSLIAT 484

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           VVLF+ G G V+GFAIT  + IL ++FTA +  R ++   +R  + K +   P++    I
Sbjct: 485 VVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPKELPKAPVT---FI 541

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSV 593
           P    I FM  R W   +S   S+ S+ L  T  +NYGIDFKGG  + V +     +L  
Sbjct: 542 PPGTKIPFMGIRRWTFALSSFLSVLSVVLFMTVDINYGIDFKGGSMIEVKSKSGDANLGD 601

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R+ L  L IG++  Q F    + L+R+  Q G   A+  V++ V+ ++ +       + 
Sbjct: 602 IRARLMELNIGEVQVQQFGAPNDVLIRVGTQDGGENAEQTVIDKVRGELQDQYDF---RR 658

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
            E+VGP +S EL ++G + ++++ + +L+Y+W RF+W FA+GAI   + D+  TLGFF +
Sbjct: 659 VEVVGPTVSGELAKQGTIAMLVALVGILVYVWFRFEWQFAVGAIVATVHDVVMTLGFFVI 718

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G+EFN +++AA+LT+IGYS+ND +VVYDR+R++++ Y   +    L++ +INETL R+ 
Sbjct: 719 TGLEFNQSSLAAILTIIGYSLNDTIVVYDRVREDLRKY-KRMPLPQLLNNAINETLSRTT 777

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            TS+   +++L + ++GG VI SF + M FG+V    SSIFIAAP+L+     
Sbjct: 778 LTSVTTILALLALVLFGGEVIRSFTMAMLFGVVFGTYSSIFIAAPLLILFKLR 830



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 78/175 (44%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++ I  G V  II +I ++ ++++ + +     A   L + +   +G  +L G
Sbjct: 361 TVGPGLGQDSIHAGKVAGIIGSILVVAFMFVAYGF-LGFLANIALAVHVAMIVGLLSLLG 419

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++Y+R+R+  +      S    ID   ++ L   V +
Sbjct: 420 ATLTLPGIAGIVLTIGMAVDSNVLIYERIREERRA---GRSVIQAIDTGFSKALATIVDS 476

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++ + I+ + +   G   +  FAI  A GI+    ++      ++          
Sbjct: 477 NVTSLIATVVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPK 531


>gi|319783200|ref|YP_004142676.1| protein-export membrane protein SecD [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317169088|gb|ADV12626.1| protein-export membrane protein SecD [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 849

 Score =  491 bits (1264), Expect = e-136,   Method: Composition-based stats.
 Identities = 322/833 (38%), Positives = 506/833 (60%), Gaps = 17/833 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + + +IL  +   I +++A PN    S L + P+ +PK +++LGLDL+GGSH++LE++++
Sbjct: 5   SRFKMILIWVAVAITVILAAPNLFSASTLAQLPNWVPKRQMTLGLDLQGGSHILLEMNQN 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D +   L+   DE+R+ L+   IG   +      + +   D    +     +      V 
Sbjct: 65  DLIKDRLETTRDEIRTLLRDAKIGYTGLAGTGRTLQVRITDPAQIDAAKTALKTLTDPVA 124

Query: 124 SKLNVDPKKNLLVTTTEKEISIVL--SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + L        +     +   +    +   I    S A+ QS+E++ +R++++G +E  +
Sbjct: 125 AGLFTGGSVQEMTLDDSEPGLLKFNVTDAGIKYRTSTALTQSIEVVERRVNELGTTEPIV 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234
           QR G  RIL+Q+PG QDP RL+++LG TAK++F  V  +   +  + G           +
Sbjct: 185 QRQGDDRILVQVPGLQDPQRLKEILGQTAKLTFQMVDQSMPVQDALNGRPPAGSSVLYSQ 244

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           D     YL+E++V +SG +L  A A ++ + ++PVV   FD  GA RF + T  N+GK  
Sbjct: 245 DDPPVPYLIENRVIVSGENLVDAQATYNSQNNEPVVSFRFDSKGAARFGQATAQNVGKLF 304

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A++LD +V++AP I + I  G  QISGNFT ++A  LA +LRAG+LP  L ++EER VG 
Sbjct: 305 AIILDNQVISAPQIREPILGGTGQISGNFTAQSANDLAVLLRAGALPATLTVIEERTVGP 364

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG DSI+ G  A + G +L+V FM V YG  G +A+ ++ ++V + + +LSLLGATLTL
Sbjct: 365 GLGQDSIHAGKVAGIIGSILVVAFMFVAYGFLGFLANIALAVHVAMIVGVLSLLGATLTL 424

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL IG+AVDSN+L+ ERIREE R  +SV  ++D GF++A +TI DSNIT+LIAT
Sbjct: 425 PGIAGIVLTIGMAVDSNVLIYERIREERRAGRSVIQAIDTGFTKALATIVDSNITSLIAT 484

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           VVLF+ G G V+GFAIT  + IL ++FTA +  R ++   +R  + K +   P++    +
Sbjct: 485 VVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPKELPKAPVT---FV 541

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSV 593
           P    I FM  R W   +S   SI S+ L  T G+NYGIDFKGG  + V A     DL+ 
Sbjct: 542 PPGTKIPFMGIRRWTFTLSSALSILSVVLFMTVGINYGIDFKGGSLIEVQAKSGNADLAD 601

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R+ L  L IG++  Q F    + L+R+  Q G   A+  V++ V+ ++ +       + 
Sbjct: 602 LRARLTELNIGEVQVQQFGTPNDVLIRVGTQDGGENAEQTVIDKVRGELQDNYDF---RR 658

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
            E+VGP +S EL ++G + ++I+ + +LIY+W RF+W FA+GAI   + D+  TLGFF +
Sbjct: 659 VEVVGPTVSGELAKQGTIAMLIALLGILIYVWFRFEWQFAVGAIVATVHDVVMTLGFFVI 718

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G+EFN +++AA+LT+IGYS+ND +VVYDR+R++++ Y   +    L++ +INETL R+ 
Sbjct: 719 SGLEFNQSSLAAILTIIGYSLNDTIVVYDRVREDLRKY-KRMPLPQLLNNAINETLSRTT 777

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            TS+   +++L + ++GG VI SF + M FG++    SSIFIAAP+L+     
Sbjct: 778 LTSVTTILALLALVLFGGEVIRSFTMAMLFGVIFGTYSSIFIAAPLLILFKLR 830



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/173 (20%), Positives = 76/173 (43%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I  G V  II +I ++ ++++ + +     A   L + +   +G  +L G  
Sbjct: 363 GPGLGQDSIHAGKVAGIIGSILVVAFMFVAYGF-LGFLANIALAVHVAMIVGVLSLLGAT 421

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+R+R+  +      S    ID    + L   V +++
Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREERRA---GRSVIQAIDTGFTKALATIVDSNI 478

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            + I+ + +   G   +  FAI  A GI+    ++      ++          
Sbjct: 479 TSLIATVVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPK 531


>gi|222106993|ref|YP_002547784.1| protein-export membrane protein SECD [Agrobacterium vitis S4]
 gi|221738172|gb|ACM39068.1| protein-export membrane protein SECD [Agrobacterium vitis S4]
          Length = 839

 Score =  489 bits (1259), Expect = e-136,   Method: Composition-based stats.
 Identities = 454/832 (54%), Positives = 595/832 (71%), Gaps = 6/832 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +PWLV  Y +I   G+L ALPN L  + L+ FPS  PK++++LGLDLRGGSHLVLEV
Sbjct: 1   MKTSPWLVATYVVIIAFGILTALPNILSPNTLNSFPSWFPKDKVALGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D  D V   LQ    + R  L+ +G+   ++R+  + + ++   +  +      +     
Sbjct: 61  DSADLVQERLQSLIQDSRRALRDDGVDAATVRKSGSSLVVTLQSAEQRAAALTALGKLAH 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V     +    +L  T     ISI L++  I    +  +EQS+EIIRQRIDQ+G++E T
Sbjct: 121 PVG----LTGAPDLAFTGEGATISITLAEAGITDRANAGVEQSLEIIRQRIDQVGVAEPT 176

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH-KVLPNNSKKGFMFGVRFLRDSDGN 239
           IQR+G  RIL+QLPG QDP+R+R+LLG+TAKMSFH              GV  L+D +G 
Sbjct: 177 IQRIGGDRILVQLPGTQDPARIRELLGSTAKMSFHMLSENATDGAAVPRGVTMLKDDEGR 236

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
            Y V+D+VE++G  L  A   FDP T++P+V   FD  GA RF E+TR N+GKP A+VLD
Sbjct: 237 TYPVDDRVELAGDRLTDARVGFDPNTNEPLVSFRFDTAGAARFAEITRANVGKPFAIVLD 296

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            +VL+APVI + I  G  QISGNFT+E+A  LAA+LRAG+LP+KL ++EER VGADLG+D
Sbjct: 297 DKVLSAPVIREPITGGSGQISGNFTVESATDLAALLRAGALPVKLTVIEERTVGADLGAD 356

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I  G    + G  L+V FMIVLYG WG+VA+ ++ LNVILT A LSL+GATLTLP IAG
Sbjct: 357 AIKMGVYTGLIGFALVVGFMIVLYGGWGIVANLALGLNVILTFACLSLIGATLTLPGIAG 416

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVLGIGLAVD+N+L+NERIREE RK +    +LD GF RAYSTI DSN+TALIAT++LF+
Sbjct: 417 IVLGIGLAVDANVLINERIREETRKGRGAMAALDAGFRRAYSTIIDSNVTALIATLLLFW 476

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
           FG G VRGFAITMGL I ISMFTA+S+VR +M+ IIR  K+K +DI PL    LIPD   
Sbjct: 477 FGSGPVRGFAITMGLGIAISMFTAVSVVRVVMLAIIRRYKLKRLDIKPLLPLQLIPDGTR 536

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I+FMRARF G+GIS   SI S+ L  T GLNYG+DF+GGIQL V+     DL+  RS L+
Sbjct: 537 IRFMRARFVGIGISAFLSIASLILFVTPGLNYGVDFRGGIQLEVVTQDRADLAAFRSGLD 596

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            L +GD++ Q F   ++ LVR++ QPG   AQT  +E ++ ++  I   ++++ TE+VGP
Sbjct: 597 GLGLGDVTLQEFGDARHLLVRVERQPGGEEAQTAAVERLRTEVKVIDATASVERTEVVGP 656

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+S EL   GI+ V+++++AML YIW RF+W FA+GAI TLILD+TKT+GFFAL G++FN
Sbjct: 657 KVSGELATAGILSVVLASLAMLGYIWARFEWPFAVGAIATLILDVTKTIGFFALTGLDFN 716

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LTA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY  ++  R+LID SINETL RS+YTS  A
Sbjct: 717 LTAIAALLTLVGYSVNDKVVVYDRMRENMRLY-KTMPLRELIDLSINETLARSLYTSATA 775

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           F+S+LPMA+WGGS + SFA+PM FGI +AASSS+FIAAPILLF+ DWR K A
Sbjct: 776 FLSLLPMAIWGGSAVESFAVPMIFGIAIAASSSVFIAAPILLFLGDWRRKRA 827


>gi|256061396|ref|ZP_05451540.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           neotomae 5K33]
 gi|261325399|ref|ZP_05964596.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           neotomae 5K33]
 gi|261301379|gb|EEY04876.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           neotomae 5K33]
          Length = 845

 Score =  486 bits (1249), Expect = e-135,   Method: Composition-based stats.
 Identities = 406/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+L IG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILSIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLARLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILSIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|304391787|ref|ZP_07373729.1| protein-export membrane protein SecD [Ahrensia sp. R2A130]
 gi|303296016|gb|EFL90374.1| protein-export membrane protein SecD [Ahrensia sp. R2A130]
          Length = 868

 Score =  484 bits (1244), Expect = e-134,   Method: Composition-based stats.
 Identities = 310/852 (36%), Positives = 496/852 (58%), Gaps = 34/852 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W +        +G+++ALPN   Q  L   P  MPK +ISLGLDL+GG HL +++
Sbjct: 2   LHFSRWKMFSILAAVFLGIMLALPNMFSQEQLKALPDWMPKKQISLGLDLQGGVHLQVKI 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEG---IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           + DD V   L+    ++R  ++      +G   +R   N +T+    +       ++++ 
Sbjct: 62  ERDDIVAERLEALVSDIRQQMRDRTQGPLGYNGIRASGNGVTVRLLSAADAPAAIERLST 121

Query: 118 FLQGVN--SKLNVDPKKNLLVTTTEKEISIVL--SQNNIDQVISHAIEQSMEIIRQRIDQ 173
             + V   S L        +  +   +  +    + + ID+ +  A+ QS+E+IR+R+D+
Sbjct: 122 LTEPVTNASSLLGGLGVVEVEQSAPSDGVLRYDLTDDGIDERLRSAVSQSIEVIRRRVDE 181

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +G +E  IQR G  R+++Q PG  DP RL++++GTTAK+ FH V  + S    + G R  
Sbjct: 182 LGTTEPVIQRQGVDRVIVQAPGFDDPERLKEVIGTTAKLGFHIVDNSMSAADALSGPRPP 241

Query: 234 ----------RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
                      +S     L++ +V ISG  L  A   FD +T++P+V   F+   ++ F 
Sbjct: 242 VGTMVVPTSDPESGEANVLIQRRVYISGEDLVDAQQGFDQRTNEPIVTFRFNNKASQAFC 301

Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343
             +  NIG   A+VLD   ++APVI  AI  G  QISG+F  ++A  LA ++RAG+LP  
Sbjct: 302 RFSSGNIGSRFAIVLDDTSISAPVIRDAICGGSGQISGSFNAQSANDLAVLMRAGALPAD 361

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
           +  VEER VG+ LG DSI  G  A +   +L+++FM++ YG  G++A+ ++  NV + + 
Sbjct: 362 ITFVEERTVGSTLGEDSIAAGQFAALIAAILVIVFMLMAYGTLGIIANLALAANVFIIMG 421

Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
           LLS++GATLTLP IAGIVL +G+AVD+N+L+ ERIREE R  +S+  ++D+GF +A  TI
Sbjct: 422 LLSVIGATLTLPGIAGIVLTMGMAVDANVLIYERIREEKRAGRSIMQAVDIGFRQAMGTI 481

Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            D+NIT LIA  +LF+ G G +RGFA+T+ + I+ S+FTA ++ R M+   +R+K+ + +
Sbjct: 482 LDANITTLIAAFILFYLGSGPIRGFAVTLAIGIVTSVFTAFTLTRLMVTLWLRWKRPRDL 541

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             + ++   L+     + FM+ R     +S +  + S+       LNYGIDF+GG  +  
Sbjct: 542 PGSLIT---LVKAGTHVNFMQWRKISFPLSAVLLVGSLATFVISNLNYGIDFQGGTLIEY 598

Query: 584 LAN---------RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                        P DL+ VRS L  L +GD+    F   +  L+R++ Q G   A+   
Sbjct: 599 RTKAATENATTLPPADLADVRSRLSELNLGDVQVSTFGQPEELLIRIESQDGGDNAEQSA 658

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L  V+  +         +  E+VGP +S EL + G + V++S +A+++YIW+RF+W FAL
Sbjct: 659 LAKVRSAM----DDHEFRRQEVVGPTVSGELAQAGTLAVLVSLLAIMVYIWLRFEWQFAL 714

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
           GA+   + D+  T+G FAL  IEF+L+++AA+LT++GYS+ND VVVYDR+R+N++ Y   
Sbjct: 715 GAVAATMHDVILTIGLFALLQIEFSLSSIAAILTIVGYSLNDTVVVYDRIRENLRKYKKK 774

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
              R L+D SIN+TL R+V TS+   ++++ + +WGG V+ +F   M FGI+V   SSIF
Sbjct: 775 -PIRTLLDMSINDTLSRTVITSLTTLLALVSLYIWGGEVLRNFTFAMIFGILVGTYSSIF 833

Query: 815 IAAPILLFIYDW 826
           IAAPIL+     
Sbjct: 834 IAAPILILFKLR 845



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 100/266 (37%), Gaps = 11/266 (4%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY------QPGD 627
                  +    N     +  R +  ++        +       ++R           G 
Sbjct: 281 QRTNEPIVTFRFNNKASQAFCRFSSGNIGSRFAIVLDDTSISAPVIRDAICGGSGQISGS 340

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             AQ+     V  +   +    T      VG  +  + I  G    +I+AI +++++ + 
Sbjct: 341 FNAQSANDLAVLMRAGALPADITFVEERTVGSTLGEDSIAAGQFAALIAAILVIVFMLMA 400

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +     + A   L  ++   +G  ++ G    L  +A ++  +G +V+  V++Y+R+R+ 
Sbjct: 401 YG-TLGIIANLALAANVFIIMGLLSVIGATLTLPGIAGIVLTMGMAVDANVLIYERIREE 459

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +      S    +D    + +G  +  ++   I+   +   G   I  FA+ +A GIV 
Sbjct: 460 KRA---GRSIMQAVDIGFRQAMGTILDANITTLIAAFILFYLGSGPIRGFAVTLAIGIVT 516

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +  ++ F    +++ ++    +   +
Sbjct: 517 SVFTA-FTLTRLMVTLWLRWKRPRDL 541


>gi|86356282|ref|YP_468174.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           etli CFN 42]
 gi|86280384|gb|ABC89447.1| protein-export translocase protein [Rhizobium etli CFN 42]
          Length = 849

 Score =  483 bits (1243), Expect = e-134,   Method: Composition-based stats.
 Identities = 439/830 (52%), Positives = 601/830 (72%), Gaps = 7/830 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR +PWLV+ Y++I  +G+LIALPN L QS+L R PS +P  ++SLGLDLRGGSHLVLEV
Sbjct: 1   MRTSPWLVLTYTVIIVVGILIALPNVLSQSVLQRIPSWLPHEQVSLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           DE D     LQ    + R  L+++GI   ++ + QN+I ++ AD+   +     +     
Sbjct: 61  DEADLTKERLQSLLQDARRVLREKGIQPKAVVRNQNQIVVTLADASQSDAAVTDLKTLAN 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L+   + +L VT     I++  S   I   + +A++QS+E+IRQR+DQ+G+SE T
Sbjct: 121 PIGTGLSAG-QADLTVTANGATITVAFSPAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQR+G++R+L+QLPG QDPS LR+LLG+TAKMSFH + PNN       GV  ++D +G  
Sbjct: 180 IQRIGANRVLVQLPGAQDPSHLRELLGSTAKMSFHMLAPNNQPGP---GVTMMQDDEGRS 236

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y V D+VEISG  L+ A   FDP TH+P+V   FD  GA RF E+TR N+G P A+VLD 
Sbjct: 237 YPVLDRVEISGDRLSDARVGFDPNTHEPIVSFRFDSAGATRFAEITRQNVGNPFAIVLDD 296

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VL+APVI + I  G  QISGNF+ ++A  LAAMLRAG+LP KL ++EER VGADLG+D+
Sbjct: 297 KVLSAPVIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  + + G +L+  F+ VLYG WG++A+ ++ ++ ILT + L+L+GATLTLP IAG+
Sbjct: 357 IKMGIYSGIVGFILVAAFIFVLYGTWGILANVALLIHTILTFSALTLVGATLTLPGIAGV 416

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VLGIGLAVD+N+L+NERIREE RK +  F ++D GF+RAYSTI D N+TALIA  +LF+F
Sbjct: 417 VLGIGLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFWF 476

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G G VRGFA+TM L ++ISMFT+++ VR  MI I R +K K ++I PL  F   P    I
Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFS--PYDKHI 534

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           QFM+ARF+GV +S L SI S+ L    GLNYG+DF+GGIQ+ V      DL+  R  L+S
Sbjct: 535 QFMKARFFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMSVKTKEAADLAKFREGLDS 594

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           L +G+I+ Q F   K+ LVR Q Q G   AQT  +  +K ++ +I P +T++ T+++GPK
Sbjct: 595 LGLGEITLQTFGDNKSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPSATVEGTDVIGPK 654

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +S EL   GI+ V+I++ AMLIYIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL
Sbjct: 655 VSGELASAGILSVVIASFAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY  S+  R++IDKSINETL RS+YT+  AF
Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++
Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRH 823


>gi|327191559|gb|EGE58571.1| protein-export translocase protein [Rhizobium etli CNPAF512]
          Length = 848

 Score =  482 bits (1240), Expect = e-134,   Method: Composition-based stats.
 Identities = 449/832 (53%), Positives = 604/832 (72%), Gaps = 7/832 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MRN+PWLV  YS+I  IGLLIALPN LPQS L R PS +P  ++SLGLDLRGGSHLVLEV
Sbjct: 1   MRNSPWLVFTYSVIIIIGLLIALPNALPQSTLQRLPSWLPHEQVSLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           DE D     LQ    + R  L+++GI   ++ + QN+I ++ AD+   +     +     
Sbjct: 61  DEADLTKERLQSLLQDARRVLREKGIQPKAVVRNQNQIVVTLADAAQSDAAVTDLKTLAN 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +++ L+   + +L VT     I+I  S   I   + +A++QS+E+IRQR+DQ+G+SE T
Sbjct: 121 PISTGLSAG-QADLAVTANGATITIGFSPAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQR+G++R+L+QLPG QDP+RLRQLLG+TAKMSFH V PNN       G+  ++D +G  
Sbjct: 180 IQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMVAPNNQPGP---GITMMQDEEGRS 236

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y V D+VEISG  L+ A  +FDP TH+PVV   FD  GA RF ++TR N+G P A+VLD 
Sbjct: 237 YAVLDRVEISGDRLSDARVSFDPNTHEPVVSFRFDSAGATRFADITRQNVGNPFAIVLDD 296

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VL+AP I + I  G  QISGNF+ ++A  LAAMLRAG+LP KL ++EER VGADLG+D+
Sbjct: 297 KVLSAPNIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  + + G VL+  F+ VLYG WG++A+ ++ ++ ILT + L+L+GATLTLP IAG+
Sbjct: 357 IKMGIYSGIVGFVLVAAFIFVLYGTWGILANVALLIHTILTFSALTLVGATLTLPGIAGV 416

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VLGIGLAVD+N+L+NERIREE RK +S F ++D GF RAYSTI D N+TALIA  +LF+F
Sbjct: 417 VLGIGLAVDANVLINERIREETRKGRSAFAAIDTGFRRAYSTIIDGNMTALIAAAILFWF 476

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G G VRGFA+TM L ++ISMFT+++ VR  MI I R  KMK + I PL  F   P    I
Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRSKMKVLHIRPLIPFS--PYDKHI 534

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           QFM+ARF+GV +S L SI S+ L    GLNYG+DF+GGIQ+ V      DL+  R  L+S
Sbjct: 535 QFMKARFFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMSVKTQGTADLAKFREGLDS 594

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           L +G+I+ Q+F G  + LVR Q Q G   AQT  +  +K ++ +I P +T++ T+++GPK
Sbjct: 595 LGLGEITLQSFGGNNSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPK 654

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +S EL   GI+ V+I++ AMLIYIW RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL
Sbjct: 655 VSGELASAGILSVVIASFAMLIYIWARFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY  S+  R++IDKSINETL RS+YT+  AF
Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++A+
Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAK 825


>gi|190890332|ref|YP_001976874.1| protein-export translocase [Rhizobium etli CIAT 652]
 gi|190695611|gb|ACE89696.1| protein-export translocase protein [Rhizobium etli CIAT 652]
          Length = 848

 Score =  482 bits (1239), Expect = e-133,   Method: Composition-based stats.
 Identities = 450/832 (54%), Positives = 604/832 (72%), Gaps = 7/832 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MRN+PWLV  YS+I  IGLLIALPN LPQS L R PS +P  ++SLGLDLRGGSHLVLEV
Sbjct: 1   MRNSPWLVFTYSVIIIIGLLIALPNALPQSTLQRLPSWLPHEQVSLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           DE D     LQ    + R  L+++GI   ++ + QN+I ++ AD+   +     +     
Sbjct: 61  DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADAAQSDAAVTDLKTLAN 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +++ L+   + +L VT     I+I  S   I   + +A++QS+E+IRQR+DQ+G+SE T
Sbjct: 121 PISTGLSAG-QADLAVTANGATITIGFSPAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQR+G++R+L+QLPG QDP+RLRQLLG+TAKMSFH V PNN       G+  ++D +G  
Sbjct: 180 IQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMVAPNNQPGP---GITMMQDEEGRS 236

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y V D+VEISG  L+ A  +FDP TH+PVV   FD  GA RF ++TR N+G P A+VLD 
Sbjct: 237 YAVLDRVEISGDRLSDARVSFDPNTHEPVVSFRFDSAGATRFADITRQNVGNPFAIVLDD 296

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VL+AP I + I  G  QISGNF+ ++A  LAAMLRAG+LP KL ++EER VGADLG+D+
Sbjct: 297 KVLSAPNIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  + + G VL+  F+ VLYG WG++A+ ++ ++ ILT + L+L+GATLTLP IAG+
Sbjct: 357 IKMGIYSGIVGFVLVAAFIFVLYGTWGILANVALLIHTILTFSALTLVGATLTLPGIAGV 416

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VLGIGLAVD+N+L+NERIREE RK +S F ++D GF RAYSTI D N+TALIA  +LF+F
Sbjct: 417 VLGIGLAVDANVLINERIREETRKGRSAFAAIDTGFRRAYSTIIDGNMTALIAAAILFWF 476

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G G VRGFA+TM L ++ISMFT+++ VR  MI I R  KMK + I PL  F   P    I
Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRSKMKVLHIRPLIPFS--PYDKHI 534

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           QFM+ARF+GV +S L SI SI L    GLNYG+DF+GGIQ+ V      DL+  R  L+S
Sbjct: 535 QFMKARFFGVTVSALLSIASIVLFIHPGLNYGVDFRGGIQMSVKTQGTADLAKFREGLDS 594

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           L +G+I+ Q+F G  + LVR Q Q G   AQT  +  +K ++ +I P +T++ T+++GPK
Sbjct: 595 LGLGEITLQSFGGNNSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPK 654

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +S EL   GI+ V+I++ AMLIYIW RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL
Sbjct: 655 VSGELASAGILSVVIASFAMLIYIWARFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY  S+  R++IDKSINETL RS+YT+  AF
Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++A+
Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAK 825


>gi|153009190|ref|YP_001370405.1| bifunctional preprotein translocase subunit SecD/SecF [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561078|gb|ABS14576.1| protein-export membrane protein SecD [Ochrobactrum anthropi ATCC
           49188]
          Length = 844

 Score =  481 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 405/833 (48%), Positives = 577/833 (69%), Gaps = 5/833 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V+LYS+I  IG++IALPNF  Q  L+  PS  PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVVLYSLIVAIGVIIALPNFFTQKQLEAMPSWFPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ E I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAASLKKDRLRSLLDDARSKLRAERIQPQSIRAVGDAVVVTIPDADQRSKAETALRTLIS 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            VN+        ++ V + + ++ + L++   +  +  A++QS+EIIRQR+DQ+G++E +
Sbjct: 121 QVNTSGFGTAINDIDVASNDNQVRLTLTEAGFNYRLDAALQQSLEIIRQRVDQVGVAEPS 180

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238
           IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D     
Sbjct: 181 IQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDAPPPGVTIMPDSKDPN 240

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            +Y +ED++ +SG  L  A A FD +T++P+V   FD +GAR+F ++T  N+ +P A+VL
Sbjct: 241 IKYPIEDQIALSGERLTDARAGFDQRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIVL 300

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG 
Sbjct: 301 DGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLGG 360

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           D+I  G    + G VL+ +F+ +LYG WG +A+ ++ L+ +LT + LSL+GATLTLP IA
Sbjct: 361 DAIKMGLITGIVGFVLVAVFIQLLYGVWGTIANVALLLHTLLTFSALSLIGATLTLPGIA 420

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GI+LGIG+AVD+NIL+NERIREE R+      +LD GF  A+STI D+N+T+LI+T++LF
Sbjct: 421 GIILGIGIAVDANILINERIREETRRGLGAMAALDKGFHSAFSTIVDANVTSLISTLLLF 480

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
            FG G VRGFAITM L I ISMFT +++VR +M + +R +K+K +          +P+  
Sbjct: 481 TFGTGPVRGFAITMMLGIAISMFTDVTLVRMVMAWYVRKRKLKVL--VIEPFLKFVPEKT 538

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  ++ ++P DL+ +R+ L
Sbjct: 539 NISFMNARFIGIGVSIVLSILSIGLFFKPGLNYGIDFKGGIQAEIVTSQPADLAQLRAKL 598

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            +L +G+++ Q+     + L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+VG
Sbjct: 599 GALGLGEVALQSAGSPNDVLIRVQRQEGGEEAQTVAVNKMREAVTELDPGVKIERTEVVG 658

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           PK+S EL R G + VI+SA+ MLIY+W RF+W+FA+GAI TLILD TK +GFFALF ++F
Sbjct: 659 PKVSGELARSGFIAVILSALGMLIYLWWRFEWFFAMGAIITLILDTTKMVGFFALFQLDF 718

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           NLTA+AA+LT IGYSVNDKVVVYDRMR+NM+LY  S   R+++D SIN+ L R VYTSM 
Sbjct: 719 NLTAIAALLTAIGYSVNDKVVVYDRMRENMRLY-KSKPLREIVDMSINQVLVRCVYTSMT 777

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            F+ +LPMA+WGGS + +FA+PM FGI +A SSSIFIAAPILL + +W     
Sbjct: 778 TFLCMLPMAIWGGSAVHNFAVPMLFGIFIATSSSIFIAAPILLLLGNWWQHRK 830



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  I+  + + ++I + +   +   A   L+L    T    +L G  
Sbjct: 355 GPDLGGDAIKMGLITGIVGFVLVAVFIQLLYGV-WGTIANVALLLHTLLTFSALSLIGAT 413

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 414 LTLPGIAGIILGIGIAVDANILINERIREETR---RGLGAMAALDKGFHSAFSTIVDANV 470

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            + IS L +  +G   +  FAI M  GI +    S+F    ++  +  W  +  ++
Sbjct: 471 TSLISTLLLFTFGTGPVRGFAITMMLGIAI----SMFTDVTLVRMVMAWYVRKRKL 522


>gi|260459799|ref|ZP_05808053.1| protein-export membrane protein SecD [Mesorhizobium opportunistum
           WSM2075]
 gi|259034601|gb|EEW35858.1| protein-export membrane protein SecD [Mesorhizobium opportunistum
           WSM2075]
          Length = 849

 Score =  481 bits (1236), Expect = e-133,   Method: Composition-based stats.
 Identities = 320/833 (38%), Positives = 506/833 (60%), Gaps = 17/833 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + + +IL  +   I +++A PN  P S L + PS +PK +++LGLDL+GGSH++LE++++
Sbjct: 5   SRFKMILIWVAVAITVILAAPNLFPASTLAQLPSWVPKRQMTLGLDLQGGSHILLEMNQN 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D +   L+   DE+R+ L+   IG   +      + +   D    +     +      V 
Sbjct: 65  DLIKDRLETTRDEIRTLLRDAKIGYTGLAGNGRTLQVRITDPAQLDAAKKALKTLTDPVA 124

Query: 124 SKLNVDPKKNLLV--TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + L        +    +    +   ++   I    S A+ QS+E++ +R++++G +E  +
Sbjct: 125 AGLFTGGSIQEMSLDESEPGLLKFTVTDAGIKYRTSTALAQSIEVVERRVNELGTTEPIV 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234
           QR G  RIL+Q+PG QDP RL+++LG TAK++F  V  +   +  + G           +
Sbjct: 185 QRQGDDRILVQVPGLQDPQRLKEILGQTAKLTFQMVDQSMPVQDALKGRPPAGSSVLYSQ 244

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           D     YL+E++V +SG +L  A A ++ + ++PVV   FD  GA RF + T  N+GK  
Sbjct: 245 DDPPVPYLIENRVIVSGENLVDAQATYNSQNNEPVVSFRFDSKGAARFGQATAQNVGKLF 304

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A++LD +V++AP I + I  G  QISGNFT ++A  LA +LRAG+LP  L ++EER VG 
Sbjct: 305 AIILDNQVISAPQIREPILGGTGQISGNFTAQSANDLAVLLRAGALPATLTVIEERTVGP 364

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG DSI+ G  A + G +L+V FM V YG  G +A+ ++ ++V + + +LSLLGATLTL
Sbjct: 365 GLGQDSIHAGKVAGIIGSILVVAFMFVAYGFLGFLANIALAVHVAMIVGVLSLLGATLTL 424

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL IG+AVDSN+L+ ERIREE R  +SV  ++D GF++A +TI DSN+T+LIAT
Sbjct: 425 PGIAGIVLTIGMAVDSNVLIYERIREERRAGRSVIQAIDTGFTKALATIVDSNVTSLIAT 484

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           VVLF+ G G V+GFAIT  + IL ++FTA +  R ++   +R  + K +   P++    +
Sbjct: 485 VVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPKELPKAPVT---FV 541

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSV 593
           P    I FM  R W   +S   SI S+ L  + G+NYGIDFKGG  + V +     DL+ 
Sbjct: 542 PPGTKIPFMGIRRWTFALSSTLSILSVVLFMSVGINYGIDFKGGSLIEVQSKSGNADLAD 601

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R  L  L IG++  Q F    + L+R+  Q     A+  V++ V+ ++ +       + 
Sbjct: 602 IRGRLTELNIGEVQVQQFGAPNDVLIRVGTQDAGENAEQTVIDKVRGELQDQYDF---RR 658

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
            E+VGP +S EL ++G + +I++ + +L+Y+W RF+W FA+GAI   + D+  TLGFF +
Sbjct: 659 VEVVGPTVSGELAKQGTIAMIVALVGILVYVWFRFEWQFAVGAIVATVHDVVMTLGFFVI 718

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G+EFN +++AA+LT+IGYS+ND +VVYDR+R++++ Y   +    L++ +INETL R+ 
Sbjct: 719 TGLEFNQSSLAAILTIIGYSLNDTIVVYDRVREDLRKY-KRMPLPQLLNNAINETLSRTT 777

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            TS+   +++L + ++GG VI SF + M FG+V    SSIFIAAP+L+     
Sbjct: 778 LTSVTTSLALLALVLFGGEVIRSFTLAMLFGVVFGTYSSIFIAAPLLILFKLR 830



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 77/175 (44%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++ I  G V  II +I ++ ++++ + +     A   L + +   +G  +L G
Sbjct: 361 TVGPGLGQDSIHAGKVAGIIGSILVVAFMFVAYGF-LGFLANIALAVHVAMIVGVLSLLG 419

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++Y+R+R+  +      S    ID    + L   V +
Sbjct: 420 ATLTLPGIAGIVLTIGMAVDSNVLIYERIREERRA---GRSVIQAIDTGFTKALATIVDS 476

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++ + I+ + +   G   +  FAI  A GI+    ++      ++          
Sbjct: 477 NVTSLIATVVLFYLGTGPVKGFAITYAIGILTTVFTAFTFTRLLVSIWLRRARPK 531


>gi|161619271|ref|YP_001593158.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           canis ATCC 23365]
 gi|254704593|ref|ZP_05166421.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           suis bv. 3 str. 686]
 gi|260566159|ref|ZP_05836629.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261755282|ref|ZP_05998991.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           suis bv. 3 str. 686]
 gi|161336082|gb|ABX62387.1| protein-export membrane protein SecD [Brucella canis ATCC 23365]
 gi|260155677|gb|EEW90757.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|261745035|gb|EEY32961.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           suis bv. 3 str. 686]
          Length = 845

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 407/834 (48%), Positives = 577/834 (69%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGSEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|163843584|ref|YP_001627988.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           suis ATCC 23445]
 gi|163674307|gb|ABY38418.1| protein-export membrane protein SecD [Brucella suis ATCC 23445]
          Length = 845

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 407/834 (48%), Positives = 577/834 (69%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPTPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|23502196|ref|NP_698323.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           suis 1330]
 gi|225627789|ref|ZP_03785826.1| protein-export membrane protein SecD [Brucella ceti str. Cudo]
 gi|254702056|ref|ZP_05163884.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           suis bv. 5 str. 513]
 gi|254708013|ref|ZP_05169841.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           pinnipedialis M163/99/10]
 gi|254710383|ref|ZP_05172194.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           pinnipedialis B2/94]
 gi|254714377|ref|ZP_05176188.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti M644/93/1]
 gi|254717275|ref|ZP_05179086.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti M13/05/1]
 gi|256031877|ref|ZP_05445491.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           pinnipedialis M292/94/1]
 gi|256160073|ref|ZP_05457767.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti M490/95/1]
 gi|256255277|ref|ZP_05460813.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti B1/94]
 gi|256369744|ref|YP_003107254.1| protein-export membrane protein, SecD/SecF family [Brucella microti
           CCM 4915]
 gi|260169012|ref|ZP_05755823.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella sp.
           F5/99]
 gi|261219097|ref|ZP_05933378.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti M13/05/1]
 gi|261222474|ref|ZP_05936755.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti B1/94]
 gi|261315509|ref|ZP_05954706.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           pinnipedialis M163/99/10]
 gi|261317947|ref|ZP_05957144.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           pinnipedialis B2/94]
 gi|261322157|ref|ZP_05961354.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti M644/93/1]
 gi|261752623|ref|ZP_05996332.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           suis bv. 5 str. 513]
 gi|261758505|ref|ZP_06002214.1| export membrane protein [Brucella sp. F5/99]
 gi|265988977|ref|ZP_06101534.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           pinnipedialis M292/94/1]
 gi|265998441|ref|ZP_06110998.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti M490/95/1]
 gi|294852659|ref|ZP_06793332.1| secD [Brucella sp. NVSL 07-0026]
 gi|23348164|gb|AAN30238.1| protein-export membrane protein, SecD/SecF family [Brucella suis
           1330]
 gi|225617794|gb|EEH14839.1| protein-export membrane protein SecD [Brucella ceti str. Cudo]
 gi|255999906|gb|ACU48305.1| protein-export membrane protein, SecD/SecF family [Brucella microti
           CCM 4915]
 gi|260921058|gb|EEX87711.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti B1/94]
 gi|260924186|gb|EEX90754.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti M13/05/1]
 gi|261294847|gb|EEX98343.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti M644/93/1]
 gi|261297170|gb|EEY00667.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           pinnipedialis B2/94]
 gi|261304535|gb|EEY08032.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           pinnipedialis M163/99/10]
 gi|261738489|gb|EEY26485.1| export membrane protein [Brucella sp. F5/99]
 gi|261742376|gb|EEY30302.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           suis bv. 5 str. 513]
 gi|262553065|gb|EEZ08899.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ceti M490/95/1]
 gi|264661174|gb|EEZ31435.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           pinnipedialis M292/94/1]
 gi|294821248|gb|EFG38247.1| secD [Brucella sp. NVSL 07-0026]
          Length = 845

 Score =  479 bits (1232), Expect = e-133,   Method: Composition-based stats.
 Identities = 407/834 (48%), Positives = 577/834 (69%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|62290226|ref|YP_222019.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 1 str. 9-941]
 gi|82700147|ref|YP_414721.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis biovar Abortus 2308]
 gi|189024460|ref|YP_001935228.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus S19]
 gi|237815734|ref|ZP_04594731.1| protein-export membrane protein SecD [Brucella abortus str. 2308 A]
 gi|254689532|ref|ZP_05152786.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 6 str. 870]
 gi|254697671|ref|ZP_05159499.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730561|ref|ZP_05189139.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 4 str. 292]
 gi|256257780|ref|ZP_05463316.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 9 str. C68]
 gi|260546771|ref|ZP_05822510.1| protein-export membrane protein [Brucella abortus NCTC 8038]
 gi|260755055|ref|ZP_05867403.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 6 str. 870]
 gi|260758271|ref|ZP_05870619.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 4 str. 292]
 gi|260762098|ref|ZP_05874441.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260884067|ref|ZP_05895681.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 9 str. C68]
 gi|297248617|ref|ZP_06932335.1| SecD/SecF family protein-export membrane protein [Brucella abortus
           bv. 5 str. B3196]
 gi|62196358|gb|AAX74658.1| protein-export membrane protein, SecD/SecF family [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616248|emb|CAJ11300.1| Acriflavin resistance protein:SecD/SecF/SecDF export membrane
           protein:SecF protein:SecD export membrane protein
           [Brucella melitensis biovar Abortus 2308]
 gi|189020032|gb|ACD72754.1| protein-export membrane protein, SecD/SecF family [Brucella abortus
           S19]
 gi|237789032|gb|EEP63243.1| protein-export membrane protein SecD [Brucella abortus str. 2308 A]
 gi|260095821|gb|EEW79698.1| protein-export membrane protein [Brucella abortus NCTC 8038]
 gi|260668589|gb|EEX55529.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 4 str. 292]
 gi|260672530|gb|EEX59351.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260675163|gb|EEX61984.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 6 str. 870]
 gi|260873595|gb|EEX80664.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 9 str. C68]
 gi|297175786|gb|EFH35133.1| SecD/SecF family protein-export membrane protein [Brucella abortus
           bv. 5 str. B3196]
          Length = 845

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 406/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYHLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+ ML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVVMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|17986963|ref|NP_539597.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis bv. 1 str. 16M]
 gi|256044963|ref|ZP_05447866.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|260565437|ref|ZP_05835921.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991390|ref|ZP_06103947.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|17982610|gb|AAL51861.1| protein translocase subunit secd / protein translocase subunit secf
           [Brucella melitensis bv. 1 str. 16M]
 gi|260151505|gb|EEW86599.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263002174|gb|EEZ14749.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis bv. 1 str. Rev.1]
          Length = 845

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 406/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAINKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+ ML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVVMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|225852812|ref|YP_002733045.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis ATCC 23457]
 gi|256263701|ref|ZP_05466233.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis bv. 2 str. 63/9]
 gi|225641177|gb|ACO01091.1| protein-export membrane protein SecD [Brucella melitensis ATCC
           23457]
 gi|263093758|gb|EEZ17763.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326409348|gb|ADZ66413.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis M28]
 gi|326539058|gb|ADZ87273.1| protein-export membrane protein SecD [Brucella melitensis M5-90]
          Length = 845

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 407/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   IL+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVILSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+ ML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVVMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|306843333|ref|ZP_07475939.1| protein-export membrane protein SecD [Brucella sp. BO2]
 gi|306844224|ref|ZP_07476817.1| protein-export membrane protein SecD [Brucella sp. BO1]
 gi|306275499|gb|EFM57236.1| protein-export membrane protein SecD [Brucella sp. BO1]
 gi|306286478|gb|EFM58069.1| protein-export membrane protein SecD [Brucella sp. BO2]
          Length = 845

 Score =  478 bits (1230), Expect = e-132,   Method: Composition-based stats.
 Identities = 407/834 (48%), Positives = 577/834 (69%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEY 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAKLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|209547898|ref|YP_002279815.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209533654|gb|ACI53589.1| protein-export membrane protein SecD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 849

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 438/833 (52%), Positives = 608/833 (72%), Gaps = 7/833 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR +PWLV  Y++I  +GLLIALPN LPQS+L R P+ +P  ++SLGLDLRGGSHLVLEV
Sbjct: 1   MRTSPWLVFTYTVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           DE D     LQ    + R  L+++GI   ++ + QN+I ++ AD+   +     +     
Sbjct: 61  DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADATQSDAAVTDLKTLAN 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +++ L+       ++      I+I  S+  I   + +A++QS+E+IRQR+DQ+G+SE T
Sbjct: 121 PISTGLSAGQSDLDVL-ANGATITIGFSKAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQR+G++R+L+QLPG QDP+RLRQLLG+TAKMSFH + PNN       GV  L+D +G  
Sbjct: 180 IQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGP---GVTMLKDDEGRT 236

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y V D+VE+SG  L+ A  +FDP TH+P+V   FD  GA RF ++TR N+G P A+VLD 
Sbjct: 237 YPVLDRVELSGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFADITRQNVGNPFAIVLDD 296

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VL+APVI + I  G  QISGNF+ ++A  LAAMLRAG+LP KL ++EER VGADLG+D+
Sbjct: 297 KVLSAPVIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  + + G +L+ +F+ VLYG WG++A+ ++ ++ ILT + L+L+GATLTLP IAG+
Sbjct: 357 IKMGIYSGIVGFILVAVFIFVLYGTWGVLANIALLIHTILTFSALTLVGATLTLPGIAGV 416

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VLGIGLAVD+N+L+NERIREE RK +  F ++D GF+RAYSTI D N+TALIA  +LFFF
Sbjct: 417 VLGIGLAVDANVLINERIREETRKGKGAFAAIDTGFNRAYSTIIDGNMTALIAAAILFFF 476

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G G VRGFA+TM L ++ISMFT+++ VR  MI I R +K K ++I PL  F   P    I
Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFS--PYDKHI 534

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           +FM+ARF+GV +S L SI S+ L    GLNYG+DF+GGIQ+ V      DL+  R  L+S
Sbjct: 535 EFMKARFFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMSVKTQGVADLAKFREGLDS 594

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           L +G+I+ Q+F  + + LVR Q Q G   AQT  +  +K ++ +I P +T++ T+++GPK
Sbjct: 595 LGLGEITLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPK 654

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +S EL   GI+ V+I+++AMLIYIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL
Sbjct: 655 VSGELAWAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY  S+  R++IDKSINETL RS+YT+  AF
Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++A++
Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAKV 826


>gi|163759440|ref|ZP_02166525.1| probable protein-export membrane protein [Hoeflea phototrophica
           DFL-43]
 gi|162283037|gb|EDQ33323.1| probable protein-export membrane protein [Hoeflea phototrophica
           DFL-43]
          Length = 854

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 331/833 (39%), Positives = 505/833 (60%), Gaps = 17/833 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +    G++ A PN L +      P  +P  +++LGLDL+GGS+++L+V+  
Sbjct: 5   SRWKTTLIWLAVLAGVVFAAPNLLDRQQAANLPEWLPSKQLTLGLDLQGGSYMLLQVERQ 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D +   L    D++R  L++ GIG   +      + +   D    E   + +    + V 
Sbjct: 65  DIIKDRLTTTVDDVRRLLREAGIGYTGLSGTGQIVQVRIRDESQIEEARNILAELTEPVA 124

Query: 124 SKLNVDPK--KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           S L       +  +  T   ++ IVL+ + I   +S A+ QS+E++R+RID++G +E  I
Sbjct: 125 SGLLGGGSIVEATIEETQSGQLRIVLTDDGITYRVSSAVAQSIEVVRKRIDELGTTEPVI 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------- 234
           QR G+ RIL+Q+PG  DP RL+ LL  TAK++F  V  +   +  M G            
Sbjct: 185 QRQGADRILVQVPGLDDPERLKSLLNQTAKLAFRMVDTSMPVQEAMDGRPPATSEVLFST 244

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           D     YL++  V +SG +L  A A +D +T++P+V   FD  G +RF + T   +G P 
Sbjct: 245 DDPPIPYLIQRSVLVSGENLVDAQAGYDQRTNEPIVSFRFDSKGGQRFGQATTQFVGLPF 304

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A+VLD +V++APVI + I  G  QISGNFT+E+A  LA +LRAG+LP  L ++EER VG 
Sbjct: 305 AIVLDEQVISAPVIREPILGGSGQISGNFTVESANDLAILLRAGALPATLTVIEERTVGP 364

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG+DSI  G  A + G VL++ FM V YG  G +A+ ++  NV + +ALL++LGATLTL
Sbjct: 365 GLGADSIAAGEIAGLIGAVLVLAFMFVAYGMLGFIANLALIANVSMIIALLTMLGATLTL 424

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL +G+AVDSN+L+ ERIREE+R  +S+  ++D GFSRA+STI D+N+T LIA 
Sbjct: 425 PGIAGIVLTVGMAVDSNVLIYERIREEHRSGRSLIQAIDAGFSRAFSTILDANVTTLIAA 484

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           ++LF+ G G VRGFAIT+ + I+ ++FTA +  R M+   +R K+ K++          +
Sbjct: 485 IILFYLGTGPVRGFAITLAIGIVTTVFTAFTFTRWMVAEWVRRKRPKTMPKGM---LDRV 541

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSV 593
                 +FM  R +   +S + S+ ++ L  T  +NYGIDFKGG  + V A +   D+  
Sbjct: 542 IRDFTFRFMTFRRFTFVLSAVASVTAMVLFATVNMNYGIDFKGGSMIEVQAKDGNADVGD 601

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R+ L  L +GDI  Q F   ++ L+R+Q Q G   A+  V+ +V+ ++        I+ 
Sbjct: 602 IRARLSELNLGDIQAQEFGTPRDVLIRVQAQGGGENAEQTVITLVRAELE---GDYDIRR 658

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
            E+VGP +S EL + G + VI S +A+L+YIW RF+W FALGAI   + D+  T+G F +
Sbjct: 659 VEVVGPTVSGELAQAGTIAVIASLMAILVYIWFRFEWQFALGAIIATVHDVVLTIGIFVI 718

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            GIEFNL+++AAVLT++GYS+ND VVVYDR+R+N++ Y   +    L+D SIN+ L R++
Sbjct: 719 SGIEFNLSSIAAVLTIVGYSLNDTVVVYDRVRENLRRY-KKLPLTQLLDLSINQMLPRTI 777

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            TS+   +++L + ++GG VI SF   M FG++V   SSIFIAAP+L+     
Sbjct: 778 LTSVTTLLALLALFIFGGEVIQSFTFAMIFGVLVGTYSSIFIAAPVLILFKLR 830



 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 74/173 (42%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I  G +  +I A+ +L ++++ +       A   LI +++  +    + G  
Sbjct: 363 GPGLGADSIAAGEIAGLIGAVLVLAFMFVAYGML-GFIANLALIANVSMIIALLTMLGAT 421

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+    + +  S    ID   +      +  ++
Sbjct: 422 LTLPGIAGIVLTVGMAVDSNVLIYERIREE---HRSGRSLIQAIDAGFSRAFSTILDANV 478

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I+ + +   G   +  FAI +A GIV    ++      ++      +   
Sbjct: 479 TTLIAAIILFYLGTGPVRGFAITLAIGIVTTVFTAFTFTRWMVAEWVRRKRPK 531


>gi|254694018|ref|ZP_05155846.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 3 str. Tulya]
 gi|261214312|ref|ZP_05928593.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 3 str. Tulya]
 gi|260915919|gb|EEX82780.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 3 str. Tulya]
          Length = 845

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 406/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYHLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRIIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+ ML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVVMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  104 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI      S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIA----ISMFTDVTLVRIIMAWFVRRRKL 523


>gi|110634147|ref|YP_674355.1| bifunctional preprotein translocase subunit SecD/SecF
           [Mesorhizobium sp. BNC1]
 gi|110285131|gb|ABG63190.1| protein translocase subunit secD [Chelativorans sp. BNC1]
          Length = 856

 Score =  478 bits (1229), Expect = e-132,   Method: Composition-based stats.
 Identities = 333/836 (39%), Positives = 495/836 (59%), Gaps = 16/836 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W      ++  +GL  A PN LPQS L   PS  P   ++LGLDL+GGSH++L++
Sbjct: 2   LHFSRWQTFFIWLVVALGLAYAAPNVLPQSWLSSLPSWAPTRPMTLGLDLQGGSHILLQI 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           + D  +N  L    DE+R  L+   IG   +      + +   D+   E     +   LQ
Sbjct: 62  NRDQLINERLTSTRDEVRRVLRDSRIGYTGLSSSGRFVQVRIRDAGEIEAAKQALGELLQ 121

Query: 121 GVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            V   L      ++  +       + + L+ + I   +S A+ QS+E++ +R++++G +E
Sbjct: 122 PVTGGLLGTSSIQELEMAEPEPGLLRLTLTDDGIQYRLSAALTQSIEVVSRRVNELGTTE 181

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF------ 232
             IQR G  RIL+Q+PG QDP RL+ +LGTTAK++F  V  +   +  + G         
Sbjct: 182 PVIQRQGDDRILVQVPGLQDPQRLKDILGTTAKLTFQMVDQSVPVQEAIQGRPPAGTTVM 241

Query: 233 -LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             RD+    +L+ED+V +SG +L  A  +FD  T++PVV   FD  GA RF + T++N+G
Sbjct: 242 YTRDNPPVPFLIEDRVIVSGENLVDAQTSFDQLTNEPVVTFRFDTRGATRFGQATQENVG 301

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           +  A+VLDG V++AP I + I  G  QI+G+FT+++A  LA +LRAG+LP  L IVEER 
Sbjct: 302 RLFAIVLDGHVISAPQIREPILGGTGQIAGSFTVQSANDLAVLLRAGALPADLTIVEERT 361

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG  LG DSI  G  A + G +L+V+FM   YG  GL+A+ ++  N+ L +A+LS+LGAT
Sbjct: 362 VGPGLGQDSIDAGKMAAIIGSILVVVFMFAAYGFLGLIANVALVANIALIVAVLSVLGAT 421

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGIVL IG+AVDSN+L+ ERIREE R  ++V  + D GF +A +TI DSNIT L
Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREERRAGRTVIQAFDSGFRKALATIIDSNITTL 481

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           IA VVLFF G G VRGFA+T+ + I+ ++FTA ++ R ++   +R  + K +    +   
Sbjct: 482 IAAVVLFFLGSGPVRGFAVTLAIGIVTTVFTAFTLTRWLVAVWLRRSRPKELPRGYIR-- 539

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590
            L+P+   I FM+ R      S +  I S+ LLF    N+GIDF GG  + V A     D
Sbjct: 540 -LVPEVTRIPFMKVRLQAFAFSFMLCIASVALLFIVKPNFGIDFTGGTLIEVRAKSGEAD 598

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +S +R  L +  IGD   Q F  E + L+R+   P        +L  V+     +     
Sbjct: 599 ISDIRQRLSAAGIGDAQVQGFGTETDALIRIGAAPDSGEESGNIL--VRNAQQAVSSDYD 656

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+ TE+VGP +S EL    ++GV+ +   +LIY+WIRF+W FALGAI     DI  TLGF
Sbjct: 657 IRRTEVVGPTVSGELAWAAVIGVLAAMAGILIYVWIRFEWQFALGAIIATANDIILTLGF 716

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +  ++F+L+ VAA+LT++GYS+ND VV+YDR+R+N++ +   +    L+D S NE L 
Sbjct: 717 ITITQLQFDLSTVAAILTIVGYSLNDTVVIYDRVRENLRRF-KKMPLGQLLDLSDNEMLS 775

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           R+  TS+  F+++L + ++GG VI SF   M FG+ +   SSIF+AAPIL+F    
Sbjct: 776 RTAMTSVTTFLALLALFIFGGEVIRSFVASMLFGVFIGTFSSIFVAAPILIFFKLR 831



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 77/173 (44%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I  G +  II +I ++++++  + +   L A   L+ +I   +   ++ G  
Sbjct: 363 GPGLGQDSIDAGKMAAIIGSILVVVFMFAAYGFL-GLIANVALVANIALIVAVLSVLGAT 421

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+R+R+  +      +     D    + L   + +++
Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREERRA---GRTVIQAFDSGFRKALATIIDSNI 478

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I+ + +   G   +  FA+ +A GIV    ++  +   ++          
Sbjct: 479 TTLIAAVVLFFLGSGPVRGFAVTLAIGIVTTVFTAFTLTRWLVAVWLRRSRPK 531


>gi|256113876|ref|ZP_05454669.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis bv. 3 str. Ether]
 gi|265995226|ref|ZP_06107783.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis bv. 3 str. Ether]
 gi|262766339|gb|EEZ12128.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis bv. 3 str. Ether]
          Length = 845

 Score =  478 bits (1228), Expect = e-132,   Method: Composition-based stats.
 Identities = 408/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+R + N + L+  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGNAVVLTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+ ML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVVMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|306839142|ref|ZP_07471959.1| protein-export membrane protein SecD [Brucella sp. NF 2653]
 gi|306405689|gb|EFM61951.1| protein-export membrane protein SecD [Brucella sp. NF 2653]
          Length = 845

 Score =  477 bits (1227), Expect = e-132,   Method: Composition-based stats.
 Identities = 406/834 (48%), Positives = 576/834 (69%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+  + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIHVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKIGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKIGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|254719368|ref|ZP_05181179.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella sp.
           83/13]
 gi|265984369|ref|ZP_06097104.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella sp.
           83/13]
 gi|264662961|gb|EEZ33222.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella sp.
           83/13]
          Length = 845

 Score =  475 bits (1222), Expect = e-131,   Method: Composition-based stats.
 Identities = 406/834 (48%), Positives = 575/834 (68%), Gaps = 6/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+  + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIHVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG WG++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKIGLMTGIIGFLLVAVFILLLYGFWGVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMLLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGDWWQRHK 831



 Score =  105 bits (261), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + + + A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKIGLMTGIIGFLLVAVFILLLYGF-WGVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|116250452|ref|YP_766290.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115255100|emb|CAK06174.1| putative transmembrane export SecD/F family protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 853

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 440/826 (53%), Positives = 603/826 (73%), Gaps = 7/826 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + WLV  Y++I  +GLLIALPN LPQS+L R P+ +P  ++SLGLDLRGGSHLVLEV
Sbjct: 1   MRTSRWLVATYTVIIVLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           DE D     LQ    + R  L+++GI   ++ + QN+I ++ AD+   +    ++     
Sbjct: 61  DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADAAQSDAAVTELKTLAN 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +++ L+   + +L VT     I++  S+  I   + +A++QS+E+IRQR+DQ+G+SE T
Sbjct: 121 PISTGLSAG-QADLDVTANGATITVGFSRAGIAANVDNAVQQSLEVIRQRVDQVGVSEPT 179

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQR+G++R+L+QLPG QDPSRLR+LLG+TAKMSFH + PNN       GV  L+D +G  
Sbjct: 180 IQRIGANRVLVQLPGAQDPSRLRELLGSTAKMSFHMLSPNN---APGPGVTMLKDDEGRS 236

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y V D+VEISG  L+ A  +FDP T +P+V   FD  GA RF E+TR N+G P A+VLD 
Sbjct: 237 YPVLDRVEISGDRLSDARVSFDPNTREPIVSFRFDSAGATRFAEITRQNVGNPFAIVLDD 296

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VL+APVI + I  G  QISG+F+ ++A  LAAMLRAG+LP KL ++EER VGADLG+D+
Sbjct: 297 KVLSAPVIREPITGGSGQISGSFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  + + G VL+  F+ VLYG WG +A+ ++ ++ ILT + L+L+GATLTLP IAG+
Sbjct: 357 IRMGIYSGIVGFVLVAAFIFVLYGTWGFLANIALLIHTILTFSALTLVGATLTLPGIAGV 416

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VLGIGLAVD+N+L+NERIREE RK +S F ++D GF RAYSTI D N+TALIA  +LFFF
Sbjct: 417 VLGIGLAVDANVLINERIREETRKGKSAFAAIDTGFRRAYSTIIDGNMTALIAAAILFFF 476

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G G VRGFA+TM L ++ISMFT+++ VR  MI I R +K+K ++I PL  F   P    I
Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRRKLKVLNIRPLIPFS--PYDKHI 534

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           +FM+ARF+GV +S L SI S+ L    GLNYG+DF+GGIQ+ V      DL+  R  L+S
Sbjct: 535 EFMKARFFGVTVSALLSIASVVLFIHPGLNYGVDFRGGIQMAVKTQGAADLAKFREGLDS 594

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           L +G+I+ Q+F  + + LVR Q Q G   AQT  +  +K ++T+I P +T++ T+++GPK
Sbjct: 595 LGLGEITLQSFGDKSSILVRAQRQEGGEEAQTAAVTKLKAEVTKIDPTATVEGTDVIGPK 654

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +S EL   GI+ V+I++ AMLIYIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL
Sbjct: 655 VSGELAWAGILSVVIASFAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY  S+  R++IDKSINETL RS+YT+  AF
Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DW
Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDW 819


>gi|241203075|ref|YP_002974171.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240856965|gb|ACS54632.1| protein-export membrane protein SecD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 848

 Score =  474 bits (1220), Expect = e-131,   Method: Composition-based stats.
 Identities = 447/832 (53%), Positives = 608/832 (73%), Gaps = 7/832 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + WLVI YS+I  +GLLIALPN LPQS+L R P+ +P  ++SLGLDLRGGSHLVLEV
Sbjct: 1   MRTSRWLVITYSVIILLGLLIALPNVLPQSVLQRVPAWLPHEQVSLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           DE D     LQ    + R  L+++GI   ++ + QN+I ++ AD+   +    ++     
Sbjct: 61  DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADAAQSDAAVTELKTLAN 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +++ L+   + +L VT     I++  S   I   + +A++QS+E+IRQR+DQ+G+SE T
Sbjct: 121 PISTGLSAG-QADLAVTANGATITVGFSPAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQR+G++R+L+QLPG QDPSRLR+LLG+TAKMSFH + PNN       GV  L+D +G  
Sbjct: 180 IQRIGANRVLVQLPGAQDPSRLRELLGSTAKMSFHMLSPNN---APGPGVTMLKDDEGRS 236

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           + V D+VEISG  L+ A  +FDP TH+P+V   FD  GA RF E+TR N+G P A+VLD 
Sbjct: 237 FPVLDRVEISGDRLSDARVSFDPNTHEPIVSFRFDSAGASRFAEITRQNVGNPFAIVLDD 296

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VL+APVI + I  G  QISG+F+ ++A  LAAMLRAG+LP KL ++EER VGADLG+D+
Sbjct: 297 KVLSAPVIREPITGGSGQISGSFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  + + G VL+ +F+ VLYG WG +A+ ++ ++ ILT + L+L+GATLTLP IAG+
Sbjct: 357 IKMGIYSGIVGFVLVAVFIFVLYGTWGFLANIALLIHTILTFSALTLVGATLTLPGIAGV 416

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VLGIGLAVD+N+L+NERIREE RK +S F ++D GF RAYSTI D N+TALIA  +LFFF
Sbjct: 417 VLGIGLAVDANVLINERIREETRKGKSAFAAIDTGFRRAYSTIIDGNMTALIAAAILFFF 476

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G G VRGFA+TM L ++ISMFT+++ VR  MI I R  K+K ++I PL  F   P    I
Sbjct: 477 GSGPVRGFAVTMALGLIISMFTSVAFVRVAMIEITRRSKLKVLNIRPLIPFS--PYDKHI 534

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           QFM+ARF+G+ +S L SI SI L    GLNYG+DF+GGIQ+ V    P DL   R  L +
Sbjct: 535 QFMKARFFGITVSALLSIASIVLFIHPGLNYGVDFRGGIQMAVKTTGPADLGTFREGLNT 594

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           L +G+IS Q+F  + + LVR Q Q G   AQT  +  +K ++T+I P +TI+ T+++GPK
Sbjct: 595 LGLGEISLQSFGDKNSILVRAQRQEGGEEAQTAAVTKLKAEVTKIDPTATIEGTDVIGPK 654

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +S EL   GI+ V+I++ AMLIYIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNL
Sbjct: 655 VSGELAWAGILSVVIASFAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNL 714

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           TA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY  S+  R++IDKSINETL RS+YT+  AF
Sbjct: 715 TAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAF 773

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++++PMA+WGGS + SFAIPM FGI+VA +SSIFIAAPILLF+ DWR ++A+
Sbjct: 774 LALVPMAIWGGSAVSSFAIPMVFGILVAGASSIFIAAPILLFLGDWRRRHAK 825


>gi|83595000|ref|YP_428752.1| bifunctional preprotein translocase subunit SecD/SecF
           [Rhodospirillum rubrum ATCC 11170]
 gi|83577914|gb|ABC24465.1| protein translocase subunit secD / protein translocase subunit secF
           [Rhodospirillum rubrum ATCC 11170]
          Length = 853

 Score =  474 bits (1219), Expect = e-131,   Method: Composition-based stats.
 Identities = 366/833 (43%), Positives = 529/833 (63%), Gaps = 15/833 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +    I    +C IGLL+ALPN          P  +P+NRI+LGLDL+GGSHL+L VD  
Sbjct: 5   SKAKTIAIIAVCLIGLLLALPNAF---KHGSLPDWLPQNRITLGLDLQGGSHLLLAVDMP 61

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             ++  L+   + +R+ L+K+ +    +      +  + A +   E         L  + 
Sbjct: 62  AVIHDRLETMLESVRTNLRKDSLRYTGLAVRDRSVVFTLASADDIETA----RGALAPLV 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                    +  +T       I L+ + +      A +QS+EI+R+RID+ G++E  I R
Sbjct: 118 QPDEPGKPADYGLTFDGLTGRIALADSGVQAWADKAAQQSIEIVRRRIDETGVNEPMIAR 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV-----RFLRDSDG 238
            G+ RIL+QLPG  DP R+++LLG TAKM+FH V       G +               G
Sbjct: 178 QGADRILVQLPGVSDPGRIKRLLGQTAKMTFHMVGDRALGDGSVPAGYRLLPSADPARPG 237

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            + LV  KVE+ G HL  A  +FD +  + VV  SFD  GARRF +VT+  +GKP A+VL
Sbjct: 238 EKILVSRKVEVDGSHLTDAKPSFDQQNGQWVVSFSFDGQGARRFADVTKMAVGKPFAIVL 297

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D +V++APVI + I  G+ QISG+FT  +A  LA +LRAG+LP  L +VEER VG DLG+
Sbjct: 298 DDKVVSAPVIREPITGGRGQISGSFTAASANDLAVLLRAGALPAPLTVVEERTVGPDLGA 357

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           DSI  G  AI  G VL+V +M + YG +G  A+ ++  N+ +TL  LSL+ ATLTLP IA
Sbjct: 358 DSIRAGMIAISVGFVLVVAYMGIFYGLFGWFANVALVFNLAITLGALSLMQATLTLPGIA 417

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G++L +G+AVD+NIL+NERIREE +K + V  S++ GF RA++TIFDSNIT LI   +LF
Sbjct: 418 GLLLSLGMAVDANILINERIREEAKKGRGVAASMETGFKRAFATIFDSNITTLIKMAILF 477

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
             G G +RGFA+T+ L I++SMFTAI++ R +M+   R  K KS+ +     F L+PD  
Sbjct: 478 SIGVGTIRGFAVTISLGIIVSMFTAITVTRLLMVIWFRRTKPKSLPMANH--FRLVPDHT 535

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I FMR R  G+G S++ S+ S+ L F  GLNYG+DF GG  + V +   VD   +R++L
Sbjct: 536 KIAFMRGRLLGLGGSVVLSVASVVLFFHPGLNYGVDFAGGTVMEVRSQNAVDFPALRTDL 595

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           +SL IG +  Q F    + L+RL+ Q G   AQ  V++ V+  +      S I+  + VG
Sbjct: 596 QSLPIGPVQLQAFGSPNDVLIRLERQEGGDAAQAEVVKQVQGMLERDYAGSEIRRVDSVG 655

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             +S EL + G++ + ++AIAMLIYIW RF+W F +GA+ T++LD+TKT+GFFA+ G++F
Sbjct: 656 ASVSAELFQDGMMALGLAAIAMLIYIWFRFEWQFGVGAVVTMLLDVTKTVGFFAITGMQF 715

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           NLTA+AA+LT++GYS+NDKVVVYDR+R+N++LY T +  R LIDKSINETLGR+V TS+A
Sbjct: 716 NLTAIAAILTIMGYSINDKVVVYDRVRENLRLYRT-MPLRQLIDKSINETLGRTVGTSLA 774

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            F++++P+AV+GG  +  FA+ + FG+V+A SSS+FIAAP+LL + + R +  
Sbjct: 775 TFLAIIPLAVFGGEALREFALVLLFGVVLATSSSVFIAAPLLLLLGEHRLRPG 827


>gi|239832214|ref|ZP_04680543.1| protein-export membrane protein SecD [Ochrobactrum intermedium LMG
           3301]
 gi|239824481|gb|EEQ96049.1| protein-export membrane protein SecD [Ochrobactrum intermedium LMG
           3301]
          Length = 844

 Score =  474 bits (1218), Expect = e-131,   Method: Composition-based stats.
 Identities = 403/833 (48%), Positives = 577/833 (69%), Gaps = 5/833 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS+I  IG++IALPNF  Q  LD  PS  PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLIVVIGVIIALPNFFTQKHLDAMPSWFPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ E I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAAGLKKDRLRTLLDDARSKLRAERIQPQSIRAVGDAVVVTIPDADQRSKAETALRTLIS 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            VN+        ++ V +T+ ++ + L++   +  +  A++QS+EIIRQR+DQ+G++E +
Sbjct: 121 QVNTSGFGTAINDIDVASTDNQVRLTLTEAGFNYRLDAALQQSLEIIRQRVDQVGVAEPS 180

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238
           IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D     
Sbjct: 181 IQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKDPN 240

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            ++ +ED++ +SG  L  A A FD +T++P+V   FD +GAR+F ++T  N+ +P A+VL
Sbjct: 241 IKFPIEDQIALSGERLTDARAGFDQRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIVL 300

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG 
Sbjct: 301 DGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLGG 360

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           D+I  G    + G VL+ +F+ +LYG WG +A+ ++ L+ +LT + LSL+GATLTLP IA
Sbjct: 361 DAIKMGLITGIVGFVLVAVFIQLLYGVWGTIANVALLLHTLLTFSALSLIGATLTLPGIA 420

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GI+LGIG+AVD+NIL+NERIREE R+      +LD GF  A+STI D+N+T+LI+T++LF
Sbjct: 421 GIILGIGIAVDANILINERIREETRRGLGAMAALDKGFHSAFSTIVDANVTSLISTLLLF 480

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
            FG G VRGFAITM L I ISMFT +++VR +M + +R +K+K +          +P+  
Sbjct: 481 TFGTGPVRGFAITMMLGIAISMFTDVTLVRMVMAWYVRKRKLKVL--VIEPFLKFVPEKT 538

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  ++ ++P DL+ +R  L
Sbjct: 539 NISFMNARFVGIGVSIVLSILSIGLFFKPGLNYGIDFKGGIQAEIVTSQPADLAQLREKL 598

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            +L +G+++ Q+     + L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+VG
Sbjct: 599 GALGLGEVALQSAGSPNDVLIRVQRQDGGEEAQTAAVNKMRQAVTELDPGVKIERTEVVG 658

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           PK+S EL R G + V++SA+ MLIY+W RF+W+FA+GAI TLILD TK +GFFALF ++F
Sbjct: 659 PKVSGELARSGFIAVVLSALGMLIYLWWRFEWFFAMGAIITLILDTTKMVGFFALFQLDF 718

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           NLTA+AA+LT IGYSVNDKVVVYDRMR+NM+LY  S   R+++D SIN+ L R +YTS+ 
Sbjct: 719 NLTAIAALLTAIGYSVNDKVVVYDRMRENMRLY-KSKPLREIVDMSINQVLVRCIYTSVT 777

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            F+ ++PMA+WGGS + +FA+PM FGIV+A SSSIFIAAPILL + +W     
Sbjct: 778 TFLCMVPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAPILLLLGNWWQHRK 830



 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 79/176 (44%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  I+  + + ++I + +   +   A   L+L    T    +L G  
Sbjct: 355 GPDLGGDAIKMGLITGIVGFVLVAVFIQLLYGV-WGTIANVALLLHTLLTFSALSLIGAT 413

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 414 LTLPGIAGIILGIGIAVDANILINERIREETR---RGLGAMAALDKGFHSAFSTIVDANV 470

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            + IS L +  +G   +  FAI M  GI +    S+F    ++  +  W  +  ++
Sbjct: 471 TSLISTLLLFTFGTGPVRGFAITMMLGIAI----SMFTDVTLVRMVMAWYVRKRKL 522


>gi|159184815|ref|NP_354562.2| bifunctional preprotein translocase subunit SecD/SecF
           [Agrobacterium tumefaciens str. C58]
 gi|159140100|gb|AAK87347.2| protein-export membrane protein SECD [Agrobacterium tumefaciens
           str. C58]
          Length = 857

 Score =  472 bits (1214), Expect = e-130,   Method: Composition-based stats.
 Identities = 313/836 (37%), Positives = 503/836 (60%), Gaps = 17/836 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W  +   ++    + IA PN   +  L+  P+    N+++LGLDL+GGSH++L++
Sbjct: 2   LHFSRWKTVFIWLLVLASVFIASPNLFSEKQLESMPAWYKDNKVTLGLDLQGGSHIMLKI 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  D V   L+    ++R+ L+   I    +     +I +  +D    E     +    Q
Sbjct: 62  ERSDIVKERLETIVGDVRTQLRDANIRYSGLTGNGQQIQVRISDPAQMEAAKTALRDLTQ 121

Query: 121 GVNSKLNVDPKKNLLVTTTEKE--ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            V++   V      +      +  + + L+   ID  +S A+ QS+E++R+R+D++G +E
Sbjct: 122 PVSAGTLVGGSITEVTMNDGGDSLLRLNLTDEGIDYRLSSAVSQSIEVVRRRVDEVGTTE 181

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233
             IQR GS RI++Q+PG QDP RL+ LL  TAK+SF  V      +  M G         
Sbjct: 182 PLIQRQGSDRIIVQVPGLQDPQRLKSLLNQTAKLSFRMVDTTMPAQDAMNGRPPATSEVL 241

Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +D     YLVE +  +SG +L  A A+F+ +T++PVV   FD  GA+RF + T+ N+G
Sbjct: 242 YSQDDPPVPYLVERRALVSGDNLVDAQASFNQQTNEPVVTFRFDSRGAQRFAQATQQNVG 301

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           KP A+VLD +V++APVI + I  G  QISG+F+++ A  LA +LRAG+LP  L +VEER 
Sbjct: 302 KPFAIVLDNQVISAPVIREPIIGGSGQISGSFSVQGANDLAVLLRAGALPATLTVVEERT 361

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG  LG+DSI  G  A   G V +++FM V YG +GL+A+ ++ +NV++ +A+LS++G+T
Sbjct: 362 VGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGFFGLLANIALIVNVVMLIAVLSVIGST 421

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGIVL IG+AVDSN+L+ ERIREE +  + +  +LD GF+RA++TI D+N+T L
Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREEVKSGKPLIQALDNGFTRAFATIIDANLTTL 481

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           I   VLF+ G G V+GFA+T+ + I+ ++FTA ++   M  + +R  + K +     +  
Sbjct: 482 IVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPKHLPKGVRTAM 541

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590
               D   I FMR R     I+ +  +  +      GLN GIDF+GG  + V A +   D
Sbjct: 542 ---FDGRDIPFMRYRRVVFMITGVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEAD 598

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +R  L  L +G+I  QNF   ++ L+R+Q Q G   A+   + +V+ ++ +      
Sbjct: 599 LADIRERLNQLNLGEIQAQNFGSPQDVLIRIQAQDGGENAEQSAITLVRGELEDKYDF-- 656

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +  E+VGP +S +L     +GV+++  A+++YIW+RF+W FALGA+ +++ D+  T+G 
Sbjct: 657 -RRVEVVGPAVSGDLTVTSTIGVLLAMAAIMVYIWVRFEWQFALGAVISMVHDVVFTIGL 715

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F   GIEFNLT++AA+LT+IGYS+ND VV+YDR+R+N++ Y   +    +ID S+N+TL 
Sbjct: 716 FVFLGIEFNLTSIAAILTIIGYSLNDTVVIYDRVRENLRRY-KKMPLSMIIDVSLNQTLS 774

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           R++ T +   +++L + ++GG VI SF   M FG+ +   SS++IAAP+L+     
Sbjct: 775 RTILTGLTVLLALLALYLFGGEVIRSFTFAMLFGVGIGVFSSVYIAAPVLIAFKLR 830



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 77/175 (44%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I  G+    I A+ +LI++++ + + F L A   LI+++   +   ++ G
Sbjct: 361 TVGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGF-FGLLANIALIVNVVMLIAVLSVIG 419

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++Y+R+R+ +K   +       +D          +  
Sbjct: 420 STLTLPGIAGIVLTIGMAVDSNVLIYERIREEVK---SGKPLIQALDNGFTRAFATIIDA 476

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++   I    +   G   +  FA+ +A GI+    ++  + A +  +        
Sbjct: 477 NLTTLIVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPK 531


>gi|148560403|ref|YP_001259231.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ovis ATCC 25840]
 gi|148371660|gb|ABQ61639.1| protein-export membrane protein, SecD/SecF family [Brucella ovis
           ATCC 25840]
          Length = 844

 Score =  471 bits (1212), Expect = e-130,   Method: Composition-based stats.
 Identities = 404/834 (48%), Positives = 575/834 (68%), Gaps = 7/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W+V LYS++  IG++IALPNF  Q  LD  PS +PK +++LGLDLRGGS+LVLEV
Sbjct: 1   MRTSKWVVALYSLVVLIGIIIALPNFFTQKQLDALPSWLPKRQVTLGLDLRGGSYLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D+ RS L+ + I   S+R + + + ++  D+  +      +   + 
Sbjct: 61  DAAALKKDRLRTLLDDARSKLRADRIQPQSIRVVGDAVVVTIPDADQRAKAETALRTLIS 120

Query: 121 GVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            VN S          +      +I + L++   +  +  A++QS+EIIRQR+DQ+G++E 
Sbjct: 121 QVNTSGFGTAINDIDVTENDNNQIRLTLTEAGFNYRLDSALQQSLEIIRQRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SD 237
           +IQR+GS RI++QLPG QDP++LRQLLG+TAKMSFH V   N       GV  + D  + 
Sbjct: 181 SIQRVGSDRIVVQLPGLQDPAQLRQLLGSTAKMSFHMVADANPNDPPPPGVTIMPDSKNP 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +ED+V +SG  L  A A FDP+T++P+V   FD +GAR+F ++T  N+ +P A+V
Sbjct: 241 AIKYPIEDQVALSGERLTDARAGFDPRTNEPIVSFRFDSLGARQFADITTKNVNRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VL+APVI + I  G  QISG+FT++   +L+A+LRAG+LP  L ++EER VG DLG
Sbjct: 301 LDGKVLSAPVIREPITGGSGQISGSFTVQDTVVLSALLRAGALPAPLTVIEERTVGPDLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            D+I  G    + G +L+ +F+++LYG W ++A+ ++ L+ +LT + LSL+GATLTLP I
Sbjct: 361 GDAIKMGLMTGIIGFLLVAVFILLLYGFWSVIANVALLLHTLLTFSALSLIGATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE RK      +LD GF  A++TI D+N+T L AT++L
Sbjct: 421 AGIILGIGIAVDANILINERIREETRKGLGAMAALDKGFHSAFATIVDANVTTLTATILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L I ISMFT +++VR +M + +R +K+K + I        +P+ 
Sbjct: 481 FLFGTGPVRGFAVTMMLGIAISMFTDVTLVRMIMAWFVRRRKLKVLHI--EPFLKFVPEH 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+SI+ SI SI L F  GLNYGIDFKGGIQ  +  ++P DL+ +R+ 
Sbjct: 539 TNFRFMNARFIGIGVSIVLSIASIILFFKPGLNYGIDFKGGIQAEISTSQPADLAQLRAK 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L +G+++ Q        L+R+Q Q G   AQT  +  +++ +TE+ P   I+ TE+V
Sbjct: 599 LGALNLGEVALQTAGSPNQVLIRVQRQEGGEEAQTAAVNKMREAVTELDPGVKIERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL R G++ VI+SA+AML YIW RF+W+FALGAI TLILD TK +GFFAL  ++
Sbjct: 659 GPKVSGELARSGMIAVILSAVAMLFYIWWRFEWFFALGAIATLILDTTKIIGFFALTQLD 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+NM+LY  S + R++ID SIN+ L R +YTSM
Sbjct: 719 FNLTAIAALLTIIGYSVNDKVVVYDRMRENMRLY-KSKTLREIIDMSINQVLVRCIYTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ + PMA+WGGS + +FA+PM FGIV+A SSSIFIAAP +L + DW  ++ 
Sbjct: 778 TTFLCMFPMAIWGGSAVHNFAVPMLFGIVIATSSSIFIAAP-MLLLGDWWQRHK 830



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 81/176 (46%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G++  II  + + ++I + + + +++ A   L+L    T    +L G  
Sbjct: 356 GPDLGGDAIKMGLMTGIIGFLLVAVFILLLYGF-WSVIANVALLLHTLLTFSALSLIGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +     +DK  +      V  ++
Sbjct: 415 LTLPGIAGIILGIGIAVDANILINERIREETR---KGLGAMAALDKGFHSAFATIVDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               + + + ++G   +  FA+ M  GI +    S+F    ++  I  W  +  ++
Sbjct: 472 TTLTATILLFLFGTGPVRGFAVTMMLGIAI----SMFTDVTLVRMIMAWFVRRRKL 523


>gi|307320138|ref|ZP_07599558.1| protein-export membrane protein SecD [Sinorhizobium meliloti AK83]
 gi|306894184|gb|EFN24950.1| protein-export membrane protein SecD [Sinorhizobium meliloti AK83]
          Length = 844

 Score =  469 bits (1207), Expect = e-130,   Method: Composition-based stats.
 Identities = 400/832 (48%), Positives = 577/832 (69%), Gaps = 5/832 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W V+ Y  I   G L ALP+ L  +M ++  S +P   ++LGLDLRGGSHLVLEV
Sbjct: 1   MRTSRWAVLAYVAIIIFGCLAALPSVLTPAMREQVASVLPFEPVTLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L    D+ R  L+ E +   S R   N +T+S  D++ ++ +  K+     
Sbjct: 61  DGAGLQKARLNSLLDDTRRVLRGERVSASSARISGNSVTVSIPDAQDRDKVLPKLQELAT 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V++     P   + VTT    I++ +++  +   ++ A+EQS+EIIR R+DQ+G++E  
Sbjct: 121 PVSTVGFAAPAPEVEVTTAGDVITLAMTEAGLADRMTKAVEQSLEIIRNRVDQVGVAEPL 180

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSDG 238
           IQR+GS+RIL+QLPG QDP+RLR+LLG+TA+MSFH +    + ++            +DG
Sbjct: 181 IQRIGSNRILVQLPGLQDPTRLRELLGSTAQMSFHMLDQSVDVTQPAPRGVDILPGANDG 240

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           N+Y VE +V ISG  L+ A   FD +T++PVVD SFD +GAR+F ++TR+N+G+P A+VL
Sbjct: 241 NRYPVESRVAISGERLDDAKVGFDQRTNQPVVDFSFDSLGARQFADITRENVGRPFAIVL 300

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG+VLTAPVIN+ I  G+ QISG+FT+E A +L+A+LR+G+LP  L I+EER+VG +LGS
Sbjct: 301 DGKVLTAPVINEPILGGRGQISGSFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLGS 360

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           DSI  G    +AG  L+V+ M++LYG WG++A+  + L+ I+T+ +L L+G+TLTLP IA
Sbjct: 361 DSIRMGLFTGLAGFGLVVVLMVILYGAWGMIANVGLVLHTIMTIGVLGLIGSTLTLPGIA 420

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GI+LGIG+AVD+NIL+N RIREE         +LD+GF++AY+TI DSN+T L  TV+LF
Sbjct: 421 GIILGIGMAVDANILINARIREETEAGAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLF 480

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           +FG G V+GFA+TM L I ISMFT++++VR +M  ++  +KMK ++I   S F  +P   
Sbjct: 481 WFGSGPVKGFAVTMMLGIGISMFTSVTVVRLLMREVVVRRKMKKLEI--PSLFGKVPQLP 538

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              FM+ RF  +G S   SI S+ L FT GLNYGIDF GGIQ+  ++   ++L  +R +L
Sbjct: 539 TFSFMKGRFLAIGFSAFLSISSVILFFTPGLNYGIDFIGGIQVEAVSKEKINLPTLRQSL 598

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           E L +G+++ Q+F G ++ L+R+Q QPG   AQT  L  VK  +T  +P ++++ TE+VG
Sbjct: 599 EELNLGEVALQDFGGGQSVLIRVQRQPGGEQAQTVALNKVKDAVTTAIPGASMERTEVVG 658

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P +S EL R G + V ++ +A+L+YIW RF+W+FA+GAI  L+LDITKT+GFFAL GI+F
Sbjct: 659 PTVSGELARSGFLAVALAMLAILLYIWFRFEWHFAVGAIAVLLLDITKTVGFFALTGIDF 718

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           NLTA+AA+LT+IGYSVNDKVVVYDRMR+N++ Y  S+ F DLID SIN+ + R ++TS A
Sbjct: 719 NLTAIAALLTMIGYSVNDKVVVYDRMRENLRKY-KSMPFSDLIDMSINQVIARCIFTSAA 777

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +S++PMA+WGG  + SFA PM FG++VA +SSI+I  PILLF+  W  + 
Sbjct: 778 TALSLVPMAIWGGEAVQSFAWPMIFGVIVATTSSIYIGGPILLFLSRWWKER 829



 Score =  105 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 74/176 (42%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + IR G+   +     +++ + I +   + + A   L+L    T+G   L G
Sbjct: 353 SVGPNLGSDSIRMGLFTGLAGFGLVVVLMVILYG-AWGMIANVGLVLHTIMTIGVLGLIG 411

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  +++  R+R+  +           +D   N+     + +
Sbjct: 412 STLTLPGIAGIILGIGMAVDANILINARIREETEA---GAGAMKALDIGFNKAYATIIDS 468

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++      + +  +G   +  FA+ M  GI ++  +S+ +   ++  +   R    
Sbjct: 469 NVTTLAGTVLLFWFGSGPVKGFAVTMMLGIGISMFTSVTVVRLLMREVVVRRKMKK 524


>gi|227820784|ref|YP_002824754.1| bifunctional preprotein translocase subunit SecD/SecF
           [Sinorhizobium fredii NGR234]
 gi|227339783|gb|ACP24001.1| protein-export membrane protein SecD/SecF [Sinorhizobium fredii
           NGR234]
          Length = 845

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 399/833 (47%), Positives = 567/833 (68%), Gaps = 6/833 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W V+ Y  I   G L A+P+ L  +M ++F S +P   ++LGLDLRGGSHLVLEV
Sbjct: 1   MRTSRWAVLAYVAIIIFGCLAAVPSVLTPAMREQFASVLPFKPVTLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L    D+ R  L+ E +   S R   N +T+S  D   +E +  K+     
Sbjct: 61  DGAGLQKARLNSLLDDTRRVLRGERVSASSARISGNSVTVSVPDPADREKVLPKLQELAA 120

Query: 121 GVNSKLNVDPKKNLLVTTTE-KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            V            +   T    I++ +++  +   ++ A+EQS+EIIR R+DQ+G++E 
Sbjct: 121 PVGGTAGFGGSAAEVDVATNGDVITLAMTEAGLADRMTKAVEQSLEIIRNRVDQVGVAEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSD 237
            IQR+GS+RIL+QLPG QDP+RLR+LLG+TA+MSFH +    + ++             D
Sbjct: 181 LIQRIGSNRILVQLPGLQDPTRLRELLGSTAQMSFHMLDQTVDITQPAPRGVDILPGADD 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           GN+Y VE +V ISG  L  A   FD +T++PVVD +FD +GAR+F ++TR+N+G+P A+V
Sbjct: 241 GNKYPVESRVAISGERLEDAKVGFDQRTNQPVVDFAFDSLGARQFADITRENVGRPFAIV 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+VLTAPVIN+ I  G+ QISGNFT+E A +L+A+LR+G+LP  L I+EER+VG +LG
Sbjct: 301 LDGKVLTAPVINEPILGGRGQISGNFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           SDSI  G    +AG  L+V  M+VLYG WG++A+  + L+ I+T+ +L L+G+TLTLP I
Sbjct: 361 SDSIRMGLYTGLAGFGLVVTLMVVLYGAWGMIANVGLVLHTIMTIGVLGLIGSTLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+N RIREE         +LD+GF++AY+TI DSN+T L  T++L
Sbjct: 421 AGIILGIGMAVDANILINARIREETEAGAGAMKALDVGFNKAYATILDSNVTTLAGTILL 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F+ G G VRGFA+TM L I+ISMFT++++VR +M  ++  +KMK ++I   S F  +P  
Sbjct: 481 FWLGSGPVRGFAVTMMLGIIISMFTSVTVVRLLMREVVVRRKMKKLEI--PSLFGRVPHL 538

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               FM+ RF  +G S   SI S+ L FT GLNYGIDF GGIQ+  ++   +DL  +R +
Sbjct: 539 PTFSFMKRRFQAIGFSAFLSISSVILFFTPGLNYGIDFIGGIQVEAVSKDKIDLPTLRHS 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           LE L +G+++ Q+F G ++ LVR+Q QPG    QT  L  +K  +T  +P ++++ TE+V
Sbjct: 599 LEELNLGEVALQDFGGGQSVLVRVQRQPGGEQEQTAALNRIKDAVTTAIPGASMERTEVV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +S EL R G + V ++ +A+L+YIW RF+W+FA+GAI  L+LDITKT+GFFAL GI+
Sbjct: 659 GPTVSGELARSGFLAVGLAMVAILLYIWFRFEWHFAVGAIAVLLLDITKTVGFFALTGID 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT+IGYSVNDKVVVYDRMR+N++ Y  S+ F DLID SIN+ + R ++TSM
Sbjct: 719 FNLTAIAALLTMIGYSVNDKVVVYDRMRENLRKY-KSMPFSDLIDMSINQVIARCIFTSM 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A  +S++PMA+WGG  + SFA PM FG++VA +SSI+I  PILLF+  W    
Sbjct: 778 ATALSLVPMAIWGGEAVRSFAWPMIFGVIVATTSSIYIGGPILLFLSRWWKDR 830



 Score =  104 bits (258), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 73/176 (41%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + IR G+   +     ++  + + +   + + A   L+L    T+G   L G
Sbjct: 354 SVGPNLGSDSIRMGLYTGLAGFGLVVTLMVVLYG-AWGMIANVGLVLHTIMTIGVLGLIG 412

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  +++  R+R+  +           +D   N+     + +
Sbjct: 413 STLTLPGIAGIILGIGMAVDANILINARIREETEA---GAGAMKALDVGFNKAYATILDS 469

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++      + +   G   +  FA+ M  GI+++  +S+ +   ++  +   R    
Sbjct: 470 NVTTLAGTILLFWLGSGPVRGFAVTMMLGIIISMFTSVTVVRLLMREVVVRRKMKK 525


>gi|325292958|ref|YP_004278822.1| bifunctional preprotein translocase subunit SecD/SecF
           [Agrobacterium sp. H13-3]
 gi|325060811|gb|ADY64502.1| bifunctional preprotein translocase subunit SecD/SecF
           [Agrobacterium sp. H13-3]
          Length = 854

 Score =  468 bits (1204), Expect = e-129,   Method: Composition-based stats.
 Identities = 314/836 (37%), Positives = 502/836 (60%), Gaps = 17/836 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W  +   ++    + IA PN      L+  P+    N+++LGLDL+GGSH++L++
Sbjct: 2   LHFSRWKTVFIWLLVLASVFIASPNLFSDKQLEGMPAWYKDNKVTLGLDLQGGSHIMLKI 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  D V   L+    ++R+ L+   I    +     +I +  +D    E     +    Q
Sbjct: 62  ERSDIVKERLETIVGDVRTQLRDANIRYSGLTGNGQQIQVRISDPAQYEAAKTALRDLTQ 121

Query: 121 GVNSKLNVDPKKNLLVTTTEKE--ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            V++   V      +      +  + + L+   +D  +S A+ QS+E++R+R+D++G +E
Sbjct: 122 PVSAGTLVGGSITEVTMNDGGDNLLRLNLTDEGVDYRLSSAVSQSIEVVRRRVDEVGTTE 181

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233
             IQR GS RI++Q+PG QDP RL+ LL  TAK+SF  V      +  M G         
Sbjct: 182 PLIQRQGSDRIIVQVPGLQDPQRLKSLLNQTAKLSFRMVDTTMPVQEAMNGRPPATSEVL 241

Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +D     YLVE +  +SG +L  A A+F+ +T++PVV   FD  GA+RF + T+ N+G
Sbjct: 242 YSQDDPPVPYLVERRALVSGDNLVDAQASFNQQTNEPVVTFRFDSRGAQRFAQATQQNVG 301

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           KP A+VLD +V++APVI + I  G  QISG+F+++ A  LA +LRAG+LP  L +VEER 
Sbjct: 302 KPFAIVLDNQVISAPVIREPIIGGSGQISGSFSVQGANDLAVLLRAGALPATLTVVEERT 361

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG  LG+DSI  G  A   G V +++FM V YG +GL+A+ ++ +NV++ +A+LS++G+T
Sbjct: 362 VGPSLGNDSITAGLTASAIGAVGVLIFMFVFYGFFGLLANIALIVNVVMLIAVLSVIGST 421

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGIVL IG+AVDSN+L+ ERIREE +  + +  SLD GF+RA++TI D+N+T L
Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREEVKSGKPLIQSLDNGFTRAFATIIDANLTTL 481

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           I   VLF+ G G V+GFA+T+ + I+ ++FTA ++   M  + +R  + K +     +  
Sbjct: 482 IVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPKHLPKGVRTAM 541

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590
               D   I FMR R     I+ +  +  +      GLN GIDF+GG  + V A +   D
Sbjct: 542 ---FDGRDIPFMRYRRVVFMITGVIMLACVGGFVAKGLNLGIDFQGGSVIEVRAKQGEAD 598

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +R  L  L +G+I  QNF   ++ L+R+Q Q G   A+   + +V+ ++ +      
Sbjct: 599 LADIRERLNQLNLGEIQAQNFGTPQDVLIRIQAQDGGENAEQSAITLVRGELQDKYDF-- 656

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +  E+VGP +S +L     +GV+++  A++IYIW+RF+W FALGA+ +++ D+  T+G 
Sbjct: 657 -RRVEVVGPAVSGDLTVTSTIGVVLAMAAIMIYIWVRFEWQFALGAVISMVHDVVFTIGL 715

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F   GIEFNLT++AA+LT+IGYS+ND VV+YDR+R+N++ Y   +    +ID S+N+TL 
Sbjct: 716 FVFLGIEFNLTSIAAILTIIGYSLNDTVVIYDRVRENLRRY-KKMPLSMIIDVSLNQTLS 774

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           R++ T +   +++L + ++GG VI SF   M FG+ +   SS++IAAP+L+     
Sbjct: 775 RTILTGLTVLLALLALYLFGGEVIRSFTFAMLFGVGIGVFSSVYIAAPVLIAFKLR 830



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 76/173 (43%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I  G+    I A+ +LI++++ + + F L A   LI+++   +   ++ G  
Sbjct: 363 GPSLGNDSITAGLTASAIGAVGVLIFMFVFYGF-FGLLANIALIVNVVMLIAVLSVIGST 421

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+R+R+ +K   +       +D          +  ++
Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREEVK---SGKPLIQSLDNGFTRAFATIIDANL 478

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I    +   G   +  FA+ +A GI+    ++  + A +  +        
Sbjct: 479 TTLIVASVLFYMGTGPVKGFAVTLAVGIITTVFTAYTLTAWMFGYWVRRSRPK 531


>gi|209964334|ref|YP_002297249.1| bifunctional preprotein translocase subunit SecD/SecF
           [Rhodospirillum centenum SW]
 gi|209957800|gb|ACI98436.1| protein-export membrane protein SecD [Rhodospirillum centenum SW]
          Length = 847

 Score =  468 bits (1202), Expect = e-129,   Method: Composition-based stats.
 Identities = 345/835 (41%), Positives = 525/835 (62%), Gaps = 17/835 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +P    + + IC +G++ +LP+ L        P+ +P   I+LGLDL+GGS+L+L+VD D
Sbjct: 5   SPLRTAVVTAICLLGVIFSLPSLL---PAGTLPAWLPYRHINLGLDLQGGSYLLLQVDAD 61

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 L    D+ R+ L+  GI    +    + +T+SFAD          +      + 
Sbjct: 62  TVRKETLSSAGDQARALLRDAGIRPTGVTADADTVTVSFADDAQVSPAVAALRPLWGPIG 121

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                +             + + L++      +   ++QS+EI+R+RID+ G++E  + R
Sbjct: 122 PGQPGEFDAAEAPR----AVRLTLTEGGFQAKMDRVVQQSLEIVRRRIDETGVNEPIVAR 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DS 236
            GS RIL+QLPG  DP R+++LLG TAKM+FH V+ + +                    +
Sbjct: 178 QGSGRILVQLPGVSDPGRIKRLLGQTAKMTFHLVVDDATLNPGSPPPPGTEWLPNADRGA 237

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
            G + LV  +VE+ G  L  A  + D +T + VV+  FD +GARRF ++T+DN+G+  A+
Sbjct: 238 GGGRVLVRKRVEVDGATLVDAQPSADSRTGQWVVNFRFDSIGARRFGDITKDNVGRLFAI 297

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLDGRV++AP IN+ I  G+ QISG+FT ++A  LA +LRAG+LP  L +VEER++G +L
Sbjct: 298 VLDGRVISAPRINEPILGGRGQISGSFTAQSATELAVLLRAGALPAPLTVVEERSIGPEL 357

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G++SI  G  A + G VL+V +M + YG+ G  A+ ++  N+ LT+A LSLL ATLTLP 
Sbjct: 358 GAESIRAGLIACLVGFVLVVSYMAMAYGRLGFYANVALIFNLFLTIAALSLLEATLTLPG 417

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG++L +G++VD+NIL+NER+REE R+ ++   +L+ GFS+AY+TI DSN+T LI  ++
Sbjct: 418 IAGLLLTLGMSVDANILINERVREEARRGRTPLAALEAGFSKAYATITDSNLTTLIKMII 477

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           L+  G G V+GFA+T+ L I+ SMFTA  + R +     R  K K + +    R    PD
Sbjct: 478 LYAVGTGTVKGFAVTISLGIITSMFTATVVARMITARWFRRVKPKILKVGTWLRPA--PD 535

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            + I FMR R  G+ +S+L S  SI L    GLNYGIDF GGI + V      D+  +R 
Sbjct: 536 NLNISFMRGRHIGIAMSVLLSAASIALFVKPGLNYGIDFAGGIVIEVRTPEATDIDRLRD 595

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +  +  G ++ Q F   ++ L+RL+ Q G   AQ +V++ ++ K+ EI P   I+  E 
Sbjct: 596 AVSGIATGSVAIQEFGSPRDTLIRLERQEGAEEAQQQVVKTLQAKLVEIYPGLEIRRVEA 655

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  +S EL + G++ + ++AIAML YI  RF+W F +GA+ T++LD+TKT+GFFAL GI
Sbjct: 656 VGASVSAELFQNGMIALGLAAIAMLAYITFRFEWQFGVGAVVTMMLDVTKTIGFFALTGI 715

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           +FNLTA+AA+LT++GYS+NDKVVVYDR+R+N++LY   +  R+LID+SINET+GR++ TS
Sbjct: 716 QFNLTAIAAILTIMGYSINDKVVVYDRVRENLRLYRK-MPLRELIDRSINETMGRTISTS 774

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +A F++ LP+A++ G  +  FA  + FG+V+A SSSIFIAAPILL++ + R +  
Sbjct: 775 IAIFLATLPLALFAGEGLREFAWVLLFGVVLATSSSIFIAAPILLYLGEKRLRRG 829


>gi|15964322|ref|NP_384675.1| bifunctional preprotein translocase subunit SecD/SecF
           [Sinorhizobium meliloti 1021]
 gi|307307058|ref|ZP_07586797.1| protein-export membrane protein SecD [Sinorhizobium meliloti
           BL225C]
 gi|15073499|emb|CAC45141.1| Putative protein-export membrane protein [Sinorhizobium meliloti
           1021]
 gi|306901998|gb|EFN32597.1| protein-export membrane protein SecD [Sinorhizobium meliloti
           BL225C]
          Length = 844

 Score =  464 bits (1194), Expect = e-128,   Method: Composition-based stats.
 Identities = 401/832 (48%), Positives = 577/832 (69%), Gaps = 5/832 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR + W V+ Y  I   G L ALP+ L  +M ++  S +P   ++LGLDLRGGSHLVLEV
Sbjct: 1   MRTSRWAVLAYVAIIIFGCLAALPSVLTPAMREQVASVLPFEPVTLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L    D+ R  L+ E +   S R   N +T+S  D++ ++ +  K+     
Sbjct: 61  DGAGLQKARLNSLLDDTRRVLRGERVSASSARISGNSVTVSIPDAQDRDKVLPKLQELAT 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V++     P   + VTT    I++ +++  +   ++ A+EQS+EIIR R+DQ+G++E  
Sbjct: 121 PVSTVGFAAPAPEVEVTTAGDVITLAMTEAGLADRMTKAVEQSLEIIRNRVDQVGVAEPL 180

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSDG 238
           IQR+GS+RIL+QLPG QDP+RLR+LLG+TA+MSFH +    + ++            +DG
Sbjct: 181 IQRIGSNRILVQLPGLQDPTRLRELLGSTAQMSFHMLDQSVDVTQPAPRGVDILPGANDG 240

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           N+Y VE +V ISG  L+ A   FD +T++PVVD SFD +GAR+F ++TR+N+G+P A+VL
Sbjct: 241 NRYPVESRVAISGERLDDAKVGFDQRTNQPVVDFSFDSLGARQFADITRENVGRPFAIVL 300

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG+VLTAPVIN+ I  G+ QISG+FT+E A +L+A+LR+G+LP  L I+EER+VG +LGS
Sbjct: 301 DGKVLTAPVINEPILGGRGQISGSFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLGS 360

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           DSI  G    +AG  L+V+ M+VLYG WG++A+  + L+ I+T+ +L L+G+TLTLP IA
Sbjct: 361 DSIRMGLFTGLAGFGLVVVLMVVLYGAWGMIANVGLVLHTIMTIGVLGLIGSTLTLPGIA 420

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GI+LGIG+AVD+NIL+N RIREE         +LD+GF++AY+TI DSN+T L  TV+LF
Sbjct: 421 GIILGIGMAVDANILINARIREETEAGAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLF 480

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           +FG G V+GFA+TM L I ISMFT++++VR +M  ++  +KMK ++I   S F  +P   
Sbjct: 481 WFGSGPVKGFAVTMMLGIGISMFTSVTVVRLLMREVVVRRKMKKLEI--PSLFGKVPQLP 538

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              FM+ RF  +G S   SI S+ L FT GLNYGIDF GGIQ+  ++   ++L  +R +L
Sbjct: 539 TFSFMKGRFLAIGFSAFLSISSVILFFTPGLNYGIDFIGGIQVEAVSKEKINLPTLRQSL 598

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           E L +G+++ Q+F G ++ L+R+Q QPG   AQT  L  VK  +T  +P ++++ TE+VG
Sbjct: 599 EELNLGEVALQDFGGGQSVLIRVQRQPGGEQAQTVALNKVKDAVTTAIPGASMERTEVVG 658

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P +S EL R G + V ++ +A+L+YIW RF+W+FA+GAI  L+LDITKT+GFFAL GI+F
Sbjct: 659 PTVSGELARSGFLAVALAMLAILLYIWFRFEWHFAVGAIAVLLLDITKTVGFFALTGIDF 718

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           NLTA+AA+LT+IGYSVNDKVVVYDRMR+N++ Y  S+ F DLID SIN+ + R ++TS A
Sbjct: 719 NLTAIAALLTMIGYSVNDKVVVYDRMRENLRKY-KSMPFSDLIDMSINQVIARCIFTSAA 777

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +S++PMA+WGG  + SFA PM FG++VA +SSI+I  PILLF+  W  + 
Sbjct: 778 TALSLVPMAIWGGEAVQSFAWPMIFGVIVATTSSIYIGGPILLFLSRWWKER 829



 Score = 96.3 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 3/139 (2%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            + A   L+L    T+G   L G    L  +A ++  IG +V+  +++  R+R+  +   
Sbjct: 389 GMIANVGLVLHTIMTIGVLGLIGSTLTLPGIAGIILGIGMAVDANILINARIREETEA-- 446

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                   +D   N+     + +++      + +  +G   +  FA+ M  GI ++  +S
Sbjct: 447 -GAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLFWFGSGPVKGFAVTMMLGIGISMFTS 505

Query: 813 IFIAAPILLFIYDWRAKNA 831
           + +   ++  +   R    
Sbjct: 506 VTVVRLLMREVVVRRKMKK 524


>gi|222148961|ref|YP_002549918.1| bifunctional preprotein translocase subunit SecD/SecF
           [Agrobacterium vitis S4]
 gi|221735947|gb|ACM36910.1| protein-export membrane protein SECD [Agrobacterium vitis S4]
          Length = 856

 Score =  463 bits (1191), Expect = e-128,   Method: Composition-based stats.
 Identities = 326/836 (38%), Positives = 504/836 (60%), Gaps = 17/836 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W  IL  +     +LIALP+   +  L R PS  P  +++LGLDL+GGSH++L++
Sbjct: 2   LHFSRWKTILLWLAVVASVLIALPDLFSKDQLARLPSWFPSKQMTLGLDLQGGSHIMLKI 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           + +D V   L+    ++RS L+  G+    +  +   + +   D    +     +     
Sbjct: 62  ERNDIVKERLEAVVGDIRSSLRDAGVRYTGLNGVGQAVQVRITDPAQLDAARKALQTLTA 121

Query: 121 GVN--SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            V+     +   ++  L  + +  +   L+   ID  +S A+ QS+E++R+R+D++G +E
Sbjct: 122 PVSTGGFGSSSVQEATLDDSGDGVLKFNLTDAGIDYRMSSALTQSIEVVRRRVDELGNTE 181

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233
             IQR GS RI++Q+PG  DP RL+ LL  TAK+SF  V  + S    + G         
Sbjct: 182 PLIQRQGSDRIIVQVPGLDDPQRLKNLLNQTAKLSFRMVDTSMSATEAISGRPPATSEVL 241

Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +D     YLVE +V +SG  L  A A+F+ + ++PVV   FD  GA+RF + T+ N+G
Sbjct: 242 YSQDEAAVPYLVEKRVLVSGEDLVDAQASFNQQNNEPVVSFRFDSRGAQRFAQATQQNVG 301

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           +P A+VLD +V++APVI + I  G  QISGNFT++ A  LA +LRAG+LP  L +VEER 
Sbjct: 302 RPFAIVLDNQVISAPVIREPIVGGSGQISGNFTVQGANDLAVLLRAGALPATLTVVEERT 361

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG  LG+DSI  G  A   G  L+V+ MI LYG +G++A  ++F N+++ +A+L+LLG+T
Sbjct: 362 VGPSLGADSIRAGVSAGFIGAALVVVLMIGLYGFFGVLAVLALFANIVMIIAILTLLGST 421

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGIVL IG+AVDSN+L+ ERIREE +  +S+  S+D+GF++A +TI D+N+T L
Sbjct: 422 LTLPGIAGIVLTIGMAVDSNVLIYERIREEYKSGRSLIQSIDIGFNKALATIVDANVTTL 481

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           IA  VLFF G G VRGF++T+ + I+ ++FTA  + R M    +  ++ K++     +  
Sbjct: 482 IAAGVLFFLGSGPVRGFSVTLAIGIITTVFTAFGLTRWMFTVWVNTRRPKALPKGVRT-- 539

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590
             I D   I FM  R +   +S   SI ++    T G+  GIDF GG  + + A +   D
Sbjct: 540 -GIFDGTNIPFMGVRRYTFLLSAALSIAALVGFGTVGMKLGIDFTGGSIIELKARQGNAD 598

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +R  L SL +GD+  Q F    + LVRLQ Q      +   +  V+  + +      
Sbjct: 599 PAAIREQLSSLNLGDVQVQGFGDPSSVLVRLQAQDEGENGEQSAVAKVRGALEQAYEF-- 656

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            + TE+VGP +S EL +   +GV+IS +A+L+YIWIRF+W FA GAI   + D+  TLG 
Sbjct: 657 -RRTEVVGPSVSGELTKSATIGVLISLMAILVYIWIRFEWQFAAGAIIATLHDVILTLGL 715

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           + + G+EF+L+++AA+LT++GYS+ND VVVYDRMR+N++ Y   +    LID SIN+TL 
Sbjct: 716 YVVTGVEFDLSSIAAILTIVGYSLNDTVVVYDRMRENLRRY-KKMPLDVLIDTSINQTLS 774

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           R++ TS+   +++L + ++GG VI SF   M FG++V   SSI++AAP+L+     
Sbjct: 775 RTILTSVTTLLALLALFLFGGEVIRSFTFAMLFGVLVGTFSSIYMAAPVLIAFRLR 830



 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + IR G+    I A  +++ +   + + F + A+  L  +I   +    L G
Sbjct: 361 TVGPSLGADSIRAGVSAGFIGAALVVVLMIGLYGF-FGVLAVLALFANIVMIIAILTLLG 419

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++Y+R+R+    Y +  S    ID   N+ L   V  
Sbjct: 420 STLTLPGIAGIVLTIGMAVDSNVLIYERIREE---YKSGRSLIQSIDIGFNKALATIVDA 476

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   I+   +   G   +  F++ +A GI+    ++  +   +     + R   A
Sbjct: 477 NVTTLIAAGVLFFLGSGPVRGFSVTLAIGIITTVFTAFGLTRWMFTVWVNTRRPKA 532


>gi|315498262|ref|YP_004087066.1| protein-export membrane protein secd [Asticcacaulis excentricus CB
           48]
 gi|315416274|gb|ADU12915.1| protein-export membrane protein SecD [Asticcacaulis excentricus CB
           48]
          Length = 863

 Score =  459 bits (1181), Expect = e-127,   Method: Composition-based stats.
 Identities = 287/848 (33%), Positives = 491/848 (57%), Gaps = 28/848 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ + W + L +++  +G+  +LPN LP+++LD++ + +PKN ++LGLDL+GGSHL+LEV
Sbjct: 2   MQLSRWKITLVTLVTLLGIWFSLPNLLPKTVLDQY-AFLPKNGLNLGLDLQGGSHLLLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D +      ++  ++E R  L+  GI   S+    + +++   ++   +     +T    
Sbjct: 61  DTEALARDKIKNLTEETRDRLRSAGIAFGSLTAQGDVVSVRINEAGRVDAAVTALTPLSN 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + +      +   +    ++ I +  ++       S A++ S+E +R+R+D +G  E T
Sbjct: 121 PLVNN--PSARDVAITKEADQVIHLTYTKEGKAAASSGAVDASIETVRRRVDNLGTREPT 178

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------- 232
           I R G++RI++Q PGE DP +L++++GTTAK++F  V  + S      G           
Sbjct: 179 IIRQGTNRIVVQAPGESDPEQLKRVIGTTAKLTFQMVDESASPADVAAGRVPPGSELLPT 238

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
              +     +V+ +V +SG +L  A  + D    +P +   FD  GAR+F E T  NIG+
Sbjct: 239 SDPTLPPSMVVKKRVIVSGENLTKAFVDTDQSN-RPAIGFRFDGEGARKFGEATSQNIGR 297

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
           P A++LDG+V++AP I  AI  G  QI+GNFT++ A  L  +L  G+L   LNI E+R V
Sbjct: 298 PFAIILDGKVVSAPRIISAITGGSGQITGNFTVQEASELVNVLNGGALTAPLNIEEQRVV 357

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIV-LYGKWGLVADFSIFLNVILTLALLSLLGAT 411
            A+LG+DS+ KG  + +   + +++FM++     +G ++  ++ +N+IL +A +S+  AT
Sbjct: 358 SAELGADSVAKGQLSTIIAFISVLIFMLLAYGWLFGGISIAALIVNLILIIAGMSVTQAT 417

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAG++L + +AVD+N+L+ ER+R+E R  ++V  +LD GFS+A  TI D+N+T+L
Sbjct: 418 LTLPGIAGLILTLAVAVDANVLIYERMRDEIRAGRNVIGALDAGFSKAMETIIDANLTSL 477

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI------ 525
            A  ++FFFG G VRGFA T+ L ++ S+F+A+ + + ++ +    ++ K++ I      
Sbjct: 478 GAAAIMFFFGAGPVRGFAWTLSLGVITSVFSAVMVTQLLLAWWYNARRPKTLPIQAADGK 537

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL------NYGIDFKGGI 579
                  ++P      F+R       IS++    S+              N G+DFKGG 
Sbjct: 538 GVWPLIKILPQKTNFGFVRFSKLAGIISMVLVAASLFFTIWPATPPCGGLNCGVDFKGGT 597

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            L +     +DL+ +RS L++L + D+  Q         +     P  +      L+ V+
Sbjct: 598 ILEMSQKSTIDLAKLRSTLDTLDLHDVQVQGAGQSGQDAMIRFESPTTNA--QAALDRVQ 655

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             I    P ++ +   +VGPK+S EL   GI+ ++ +   M++YIW RF+W F +GA+  
Sbjct: 656 TSIKAQFPDASFKPATVVGPKVSGELFTGGILALVFAIGLMMVYIWFRFEWQFGMGAVVG 715

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L+ D+  T G FA+F +EF LTAVAA+LT+IGYS+ND VVV+DR+R+N++ Y   +  +D
Sbjct: 716 LMHDVILTFGLFAIFRLEFTLTAVAAILTIIGYSMNDTVVVFDRIRENLRKY-KKMPLKD 774

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +ID SINETL R++ T + A +++  +AV GG  + SF++ + FGI++   SSI++AAP+
Sbjct: 775 VIDLSINETLSRTIITGVTAVMALTGLAVLGGEALFSFSVALIFGIIIGTYSSIYVAAPV 834

Query: 820 LLFIYDWR 827
           +L     R
Sbjct: 835 ILLWGVNR 842



 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 85/177 (48%), Gaps = 3/177 (1%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
             +V  ++  + + KG +  II+ I++LI++ + + W F   +I  LI+++   +   ++
Sbjct: 354 QRVVSAELGADSVAKGQLSTIIAFISVLIFMLLAYGWLFGGISIAALIVNLILIIAGMSV 413

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 L  +A ++  +  +V+  V++Y+RMR  ++      +    +D   ++ +   +
Sbjct: 414 TQATLTLPGIAGLILTLAVAVDANVLIYERMRDEIRA---GRNVIGALDAGFSKAMETII 470

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++ +  +   M  +G   +  FA  ++ G++ +  S++ +   +L + Y+ R   
Sbjct: 471 DANLTSLGAAAIMFFFGAGPVRGFAWTLSLGVITSVFSAVMVTQLLLAWWYNARRPK 527


>gi|150395408|ref|YP_001325875.1| bifunctional preprotein translocase subunit SecD/SecF
           [Sinorhizobium medicae WSM419]
 gi|150026923|gb|ABR59040.1| protein-export membrane protein SecD [Sinorhizobium medicae WSM419]
          Length = 844

 Score =  458 bits (1178), Expect = e-126,   Method: Composition-based stats.
 Identities = 395/832 (47%), Positives = 575/832 (69%), Gaps = 5/832 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M  + W V+ Y  I   G L ALP+ L  +M ++  S +P   ++LGLDLRGGSHLVLEV
Sbjct: 1   MHTSRWAVLAYVAIIIFGCLAALPSVLTPAMREQVASVLPFEPVTLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L    D+ R  L+ E +   S R   N +T+S  D++ ++ +  K+     
Sbjct: 61  DGAGLQKARLNSLLDDTRRVLRGERVSASSARISGNGVTVSIPDAQDRDKVLPKLQELAT 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V++         + V+TT   I++ +++  +   ++ A+EQS+EIIR R+DQ+G++E  
Sbjct: 121 PVSTVGFAASAPEVEVSTTGDVITLGMTEAGLADRMTKAVEQSLEIIRNRVDQVGVAEPL 180

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSDG 238
           IQR+GS+RIL+QLPG QDP+RLR+LLG+TA+MSFH +    + ++             DG
Sbjct: 181 IQRIGSNRILVQLPGLQDPTRLRELLGSTAQMSFHMLDQSVDVTQPAPRGVDILPGADDG 240

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           N+Y VE ++ ISG  L  A   FD +T++PVVD +FD +GAR+F ++TR+N+G+P A+VL
Sbjct: 241 NRYAVETRIAISGERLEDAKVGFDQRTNQPVVDFTFDSLGARQFADITRENVGRPFAIVL 300

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG+VLTAPVIN+ I  G+ QISG+FT+E A +L+A+LR+G+LP  L I+EER+VG +LGS
Sbjct: 301 DGKVLTAPVINEPILGGRGQISGSFTVEEATVLSALLRSGALPAPLTIIEERSVGPNLGS 360

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           DSI  G    +AG  L+V+ M+VLYG WG++A+  + L+ I+T+ +L L+G+TLTLP IA
Sbjct: 361 DSIRMGLFTGLAGFGLVVVLMVVLYGAWGMIANVGLVLHTIMTIGILGLIGSTLTLPGIA 420

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GI+LGIG+AVD+NIL+N RIREE         +LD+GF++AY+TI DSN+T L  TV+LF
Sbjct: 421 GIILGIGMAVDANILINARIREETEAGAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLF 480

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           +FG G V+GFA+TM L I ISMFT++++VR +M  ++  +KMK +     S F  +P   
Sbjct: 481 WFGSGPVKGFAVTMMLGIGISMFTSVTVVRLLMREVVVRRKMKKL--VIPSLFGPVPRLP 538

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           +  FM+ RF  +G S   SI S+ L FT GLNYGIDF GGIQ+  ++   +DL+ +R ++
Sbjct: 539 SFSFMKGRFLAIGFSAFLSISSVVLFFTPGLNYGIDFIGGIQVEAVSKEKIDLATLRRSV 598

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           E L +G+++ Q+F G ++ L+R+Q QPG   AQ+  L  VK  +T  +P ++++ TE+VG
Sbjct: 599 EELNLGEVALQDFGGGQSVLIRVQRQPGGEQAQSLALNKVKDAVTTAIPGASMERTEVVG 658

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P +S EL R G + V ++ +A+L+YIW RF+W+FA+GAI  L+LDITKT+GFFAL GI+F
Sbjct: 659 PTVSGELARSGFLAVALAMVAILLYIWFRFEWHFAVGAIAVLLLDITKTVGFFALTGIDF 718

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           NLTA+AA+LT+IGYSVNDKVVVYDRMR+N++ Y  S++F DLID SIN+ + R ++TS A
Sbjct: 719 NLTAIAALLTMIGYSVNDKVVVYDRMRENLRRY-KSMAFSDLIDLSINQVIARCIFTSAA 777

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +S++PMA+WGG  + SFA PM FG++VA +SSI+I  PILLF+  W  + 
Sbjct: 778 TALSLVPMAIWGGEAVQSFAWPMIFGVIVATTSSIYIGGPILLFLSRWWKER 829



 Score = 96.3 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 3/139 (2%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            + A   L+L    T+G   L G    L  +A ++  IG +V+  +++  R+R+  +   
Sbjct: 389 GMIANVGLVLHTIMTIGILGLIGSTLTLPGIAGIILGIGMAVDANILINARIREETEA-- 446

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                   +D   N+     + +++      + +  +G   +  FA+ M  GI ++  +S
Sbjct: 447 -GAGAMKALDIGFNKAYATIIDSNVTTLAGTVLLFWFGSGPVKGFAVTMMLGIGISMFTS 505

Query: 813 IFIAAPILLFIYDWRAKNA 831
           + +   ++  +   R    
Sbjct: 506 VTVVRLLMREVVVRRKMKK 524


>gi|83952734|ref|ZP_00961464.1| protein-export membrane protein SecD [Roseovarius nubinhibens ISM]
 gi|83835869|gb|EAP75168.1| protein-export membrane protein SecD [Roseovarius nubinhibens ISM]
          Length = 877

 Score =  457 bits (1175), Expect = e-126,   Method: Composition-based stats.
 Identities = 305/863 (35%), Positives = 469/863 (54%), Gaps = 41/863 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSA 38
           ++ + W  IL   +  IGLL+A PN                            L ++P+ 
Sbjct: 2   LKIDLWKRILIWGVVLIGLLLAAPNGFYNRVETHNDAAKLVEQGADPASVSDELAQWPTW 61

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK- 97
           +P   ++LGLDLRGG+HL++EV   +     L+    E+R  L+     V ++R  Q   
Sbjct: 62  LPSGLVNLGLDLRGGAHLLVEVRVQEVYQARLEAMWPEVRDLLRDNRGEVGAIRLQQENA 121

Query: 98  --ITLSF-ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
             + +               V    + V S          +       + + LS+     
Sbjct: 122 EELVVQLVQKPEAVSQAVTLVRGLARPVTSLTGAGSNDIEVS-ARGDSVVVRLSEAEQRA 180

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
                + Q++EIIR+RID++G  E TIQR G+ RILIQ+PG      L+ ++GTTAK++F
Sbjct: 181 TDERTVRQALEIIRRRIDEVGTREPTIQRQGAERILIQVPGIGSAEELKAIIGTTAKLTF 240

Query: 215 HKV----LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
             V       N + G    +    D +G  Y++E    ++G  L  A  +FD    +P V
Sbjct: 241 QPVVSRTSNANERPGAGNEILPSLDEEGVYYILERAPVVTGEELVDAQPDFDQNG-RPAV 299

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
              F+  GAR+F   T +NIG P A+VLDG V++APVI   IP G   I+G FT+E    
Sbjct: 300 SFRFNTTGARKFGNYTAENIGNPFAIVLDGEVISAPVIQSHIPGGSGIITGQFTVEETTN 359

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +LRAG+LP  L+ +EER +G +LG+DSI  G  A      L++ FM   YG++GL A
Sbjct: 360 LAVLLRAGALPAGLDFLEERTIGPELGADSIEAGKIACFVAFALVLAFMWASYGRFGLFA 419

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
           + ++ +NV L   LLSL+GATLTLP IAGIVL IG+AVD+N+L+ ERIREE    +    
Sbjct: 420 NIALIVNVGLIFGLLSLIGATLTLPGIAGIVLTIGMAVDANVLIFERIREEMATAKGPAR 479

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           ++++G+ +A S I D+NIT  I  V+LF  G G VRGF+IT+GL I+ S+FTAI + R +
Sbjct: 480 AIELGYEKALSAIVDANITTFITAVILFVMGSGPVRGFSITLGLGIITSLFTAIYVTRLL 539

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           ++     K+ KS+         L+P      F R     +G S+L  + ++      GLN
Sbjct: 540 VVMWYDRKRPKSV--LQGRSLKLVPQVTNWDFFRRWKLSIGASVLMILVAVTSFGAQGLN 597

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQ 624
           +GIDF+GG  +   +   +D+   R  +E L +GD              +   +VR+Q Q
Sbjct: 598 FGIDFRGGTTIRTESAESIDIGTYRGAIEELGLGDVTITEVFDPTFAPDQNVAMVRIQAQ 657

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                    ++  V+  +   VP     + E VGPK+S ELI   ++ V+++  A+L+YI
Sbjct: 658 DDQESVTAELINSVEAALAAAVPDIKFTSVESVGPKVSGELITTAVIAVMLAIGAVLVYI 717

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           W+RF+W FALGA+  L+ D+  T+G FA+F I+F+L  +AA+LT++GYS+ND VVV+DR+
Sbjct: 718 WLRFEWQFALGAVAALVHDVVLTIGVFAIFQIQFDLAIIAALLTIVGYSLNDTVVVFDRV 777

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+N++ Y       ++++ SINETL R++ TS+   ++++ +   GG VI  F   M +G
Sbjct: 778 RENLRKYKKKQ-LGEVLNLSINETLSRTMMTSVTTLLALVALYFLGGDVIRGFVFAMIWG 836

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
           ++V   SS+F+A+ ILL +   R
Sbjct: 837 VIVGTYSSVFVASTILLKLGVKR 859



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 86/176 (48%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++  + I  G +   ++   +L ++W  +   F L A   LI+++    G  +L G
Sbjct: 380 TIGPELGADSIEAGKIACFVAFALVLAFMWASYG-RFGLFANIALIVNVGLIFGLLSLIG 438

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++++R+R+ M    T+      I+    + L   V  
Sbjct: 439 ATLTLPGIAGIVLTIGMAVDANVLIFERIREEMA---TAKGPARAIELGYEKALSAIVDA 495

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++  FI+ + + V G   +  F+I +  GI+ +  ++I++   +++  YD +   +
Sbjct: 496 NITTFITAVILFVMGSGPVRGFSITLGLGIITSLFTAIYVTRLLVVMWYDRKRPKS 551


>gi|114707235|ref|ZP_01440133.1| probable protein-export membrane protein [Fulvimarina pelagi
           HTCC2506]
 gi|114537431|gb|EAU40557.1| probable protein-export membrane protein [Fulvimarina pelagi
           HTCC2506]
          Length = 856

 Score =  456 bits (1172), Expect = e-126,   Method: Composition-based stats.
 Identities = 331/836 (39%), Positives = 515/836 (61%), Gaps = 19/836 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W  IL  ++  +G+L ALPN  P+S+LD FP  +P ++++LGLDL+GGS+++L+VDE+
Sbjct: 5   SRWKSILIWLVVAVGILYALPNVFPRSVLDGFPDFLPNDQVTLGLDLQGGSYILLQVDEE 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D +   +Q   D  RS L++  +G  ++ +    IT+   D    E   + ++   + V+
Sbjct: 65  DLIAKRVQSLGDSARSSLRQARVGYSAIAENDRSITIRLRDPDQTEAAQEALSELAEPVS 124

Query: 124 SKLNVDPK--KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           S L       +  + T     I + L+   +D   S A+EQS+E++R+R+D++G +E  I
Sbjct: 125 SGLLSGGTLSEAEISTPQSGVIEVSLTPEGVDYRTSSAVEQSIEVVRRRVDELGTTEPVI 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL---------PNNSKKGFMFGVRF 232
           QR G++RI++Q+PG  DP RL+ LL  TA+++F  V            +++      + +
Sbjct: 185 QRQGTNRIIVQVPGLGDPDRLKNLLNQTAQLNFRMVDLTASPEAVANGDARPPAGSELLY 244

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
             D      LV+ +V +SG +L  A   FD +T++PVV+I FD  G  +F  VT+ N+G 
Sbjct: 245 TTDQPPEPLLVQRQVMVSGENLVDAQPGFDQQTNEPVVNIRFDNRGGTQFARVTQANVGS 304

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
           P A+VLD +VL+AP I + I  G+AQISGNF +++A  LA +LRAG+LP  L+I+EER V
Sbjct: 305 PFAMVLDNQVLSAPNIREPILGGQAQISGNFDVQSANDLAVLLRAGALPANLDILEERTV 364

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG+DSI  G  A V G +L+++FMI  YG  G++A+ ++ +NV+L  A+L+ +GATL
Sbjct: 365 GPGLGADSIAAGEIAGVIGAILVIVFMIAAYGFLGVIANLALAINVVLLFAILTAIGATL 424

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           TLP IAGIVL IG+AVDSN+L+ ERIRE   +  +S+  S+D+GF +A +TI D+NIT L
Sbjct: 425 TLPGIAGIVLTIGMAVDSNVLIYERIREERRKHGRSIVQSIDVGFQKALATILDANITTL 484

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           IA  +LF+ G G VRGFA+T+ + IL ++FTA ++ R ++ + ++ ++ K +    +   
Sbjct: 485 IAAGILFWLGSGPVRGFAVTLAIGILTTVFTAYTLTRWLVAYWVKTRRPKELPQGFIR-- 542

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590
            L+P+   I+FM  R     +S+   + S+ +L   GLN+GIDF GG  + V A   P D
Sbjct: 543 -LVPESTFIRFMLFRLKAFYLSLALVVASMVVLPLIGLNFGIDFTGGSVIEVRAKEGPAD 601

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R+ L+   I D+  Q+F      L+R+   P       +  E ++     +     
Sbjct: 602 VGGIRTTLDEAGIPDVQVQSFGTNSEALIRIGNAPDAPDGAQQ--ETIQTAQASLEEAYD 659

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+ TE+VGP +S EL    I GV+ S + +L+YIWIRF+W FA+GAI   I D+  TLGF
Sbjct: 660 IRRTEVVGPTVSGELAWAAIFGVLASLLGILVYIWIRFEWQFAIGAIVATINDVFLTLGF 719

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             L  IEFNL  VAA+LT++GYS+ND VV+YDR+R+N++ + T     DL+D S NE L 
Sbjct: 720 MVLTQIEFNLATVAAILTIVGYSLNDTVVIYDRVRENLRRFKTKK-LGDLLDLSDNEMLS 778

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           R++ TS+   +++  + V+GG VI +F  PM FG+++   SSIF+AAP+L F    
Sbjct: 779 RTLTTSLTTLLALSALYVFGGEVIQNFVAPMMFGVLIGTFSSIFVAAPMLYFFNLR 834



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 89/263 (33%), Gaps = 9/263 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                  + +  +        R    ++        +        +R     G +     
Sbjct: 275 QQTNEPVVNIRFDNRGGTQFARVTQANVGSPFAMVLDNQVLSAPNIREPILGGQAQISGN 334

Query: 634 VLEMVKKKIT------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                   +        +     I     VGP +  + I  G +  +I AI +++++   
Sbjct: 335 FDVQSANDLAVLLRAGALPANLDILEERTVGPGLGADSIAAGEIAGVIGAILVIVFMIAA 394

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           + +   + A   L +++          G    L  +A ++  IG +V+  V++Y+R+R+ 
Sbjct: 395 YGF-LGVIANLALAINVVLLFAILTAIGATLTLPGIAGIVLTIGMAVDSNVLIYERIREE 453

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            + +    S    ID    + L   +  ++   I+   +   G   +  FA+ +A GI+ 
Sbjct: 454 RRKH--GRSIVQSIDVGFQKALATILDANITTLIAAGILFWLGSGPVRGFAVTLAIGILT 511

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
              ++  +   ++ +    R   
Sbjct: 512 TVFTAYTLTRWLVAYWVKTRRPK 534


>gi|85703422|ref|ZP_01034526.1| protein-export membrane protein SecD [Roseovarius sp. 217]
 gi|85672350|gb|EAQ27207.1| protein-export membrane protein SecD [Roseovarius sp. 217]
          Length = 878

 Score =  454 bits (1167), Expect = e-125,   Method: Composition-based stats.
 Identities = 303/859 (35%), Positives = 479/859 (55%), Gaps = 42/859 (4%)

Query: 6   WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43
           W  +    +  +GL++ALPN                            L  +P  MP N 
Sbjct: 7   WKRLCIWGLVALGLMLALPNGFYGKVERHNDAVAAVEAGVDPATVTEDLAVWPEWMPSNL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-----KI 98
           ++LGLDLRGG+HL+ EV  +D     ++    E+R  L++E   V  +R         +I
Sbjct: 67  VNLGLDLRGGAHLLAEVKVEDVYQARVEGMWPEVRDLLREERDRVGPIRLQTTEAPELRI 126

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
            L        E  A  V    + V   L      ++ VT+   +I + LS+         
Sbjct: 127 RLVERPEMAAEAAA-LVRGIARPVTDTLTGVGGSDIDVTSEGADIIVRLSEAERRATDDR 185

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
            + Q++EIIR+RID++G  E TIQR G+ RILIQ+PG    + L+ L+GTTA+++F  V+
Sbjct: 186 TVRQALEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSAAELKALIGTTAQLTFQPVI 245

Query: 219 PNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
              S      G         D +G  Y++E    ++G  L  A  +FD    +P V   F
Sbjct: 246 SRASSADAQAGAGNEVLPSLDEEGVFYILERAPVVTGEELVDAQPDFDQNG-RPAVSFRF 304

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
           +  GAR+F + T +NIG P A+VLDG V++APVI   I  G   I+GNF +E +  LA +
Sbjct: 305 NPTGARKFGDYTAENIGNPFAIVLDGEVISAPVIQSHIAGGSGIITGNFNVEDSTNLAVL 364

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           LRAG+LP  L  +EER VG +LG+DSI  G  A +    L++++M++ YG +G+ A+ ++
Sbjct: 365 LRAGALPAGLEFLEERTVGPELGADSIEAGKLACLVAFALVLVYMVLSYGVFGIFANIAL 424

Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
            +NV L   LLSL+G+TLTLP IAGIVL IG+AVD+N+LV ERIREE +  +    ++D+
Sbjct: 425 IINVGLIFGLLSLIGSTLTLPGIAGIVLTIGMAVDANVLVFERIREEMKSAKGAARAIDL 484

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G+ +A S I D+NIT  +  ++L+  G G VRGFAIT+GL I+ S+FTA+ + R + +  
Sbjct: 485 GYEKAMSAIVDANITTFMTALILYVMGSGPVRGFAITLGLGIITSVFTALFVTRLIAVIW 544

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
              ++ K++         ++P+  ++ F       +GIS +  + ++      GLN+GID
Sbjct: 545 FERRRPKTVLTG--RYLRIVPEVTSLDFFGRWKLWLGISGVMILVALGSFAVQGLNFGID 602

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDS 628
           FKGG  +   + + VD+   R  +  L +GD              E   ++R+Q Q    
Sbjct: 603 FKGGTTIRTQSAQEVDIGTYREAIGGLGLGDISITEVFDPTFGPDENVAMLRIQAQDEAE 662

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                V+  V+  + + VP     + E VGPK+S ELI+  ++ V ++  A+L+YIW+RF
Sbjct: 663 SVTPEVIAAVEAALQQAVPDIQFTSVESVGPKVSGELIQAAMLAVALAIGAVLVYIWMRF 722

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +W FA+GA+  L+ D+  T+G F+   I+F+L  +AA+LT++GYS+ND VVV+DR+R+N+
Sbjct: 723 EWQFAVGAVIALVHDVALTIGVFSELQIQFDLAIIAALLTIVGYSLNDTVVVFDRVRENL 782

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           + Y      RD+++ SINETL R++ TS+   ++++ +   GG VI  F   M +G++V 
Sbjct: 783 RKY-KQKPLRDVLNLSINETLSRTMMTSVTTLLALVALYFLGGDVIRGFVFAMIWGVIVG 841

Query: 809 ASSSIFIAAPILLFIYDWR 827
             SSIF+A+ +L+++   R
Sbjct: 842 TYSSIFVASTVLMWLGIKR 860



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 86/173 (49%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  + I  G +  +++   +L+Y+ + +   F + A   LI+++    G  +L G  
Sbjct: 383 GPELGADSIEAGKLACLVAFALVLVYMVLSYGV-FGIFANIALIINVGLIFGLLSLIGST 441

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V+V++R+R+ MK   ++      ID    + +   V  ++
Sbjct: 442 LTLPGIAGIVLTIGMAVDANVLVFERIREEMK---SAKGAARAIDLGYEKAMSAIVDANI 498

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             F++ L + V G   +  FAI +  GI+ +  +++F+   I +  ++ R   
Sbjct: 499 TTFMTALILYVMGSGPVRGFAITLGLGIITSVFTALFVTRLIAVIWFERRRPK 551


>gi|254449196|ref|ZP_05062645.1| SecD export membrane protein [gamma proteobacterium HTCC5015]
 gi|198261173|gb|EDY85469.1| SecD export membrane protein [gamma proteobacterium HTCC5015]
          Length = 928

 Score =  453 bits (1164), Expect = e-125,   Method: Composition-based stats.
 Identities = 260/827 (31%), Positives = 444/827 (53%), Gaps = 43/827 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +       + LGLDLRGG H +++VD    +   L+ +  E+R+ L++E +
Sbjct: 103 NLAPATPTWLRDWGAAPMYLGLDLRGGIHFLMQVDMAGSLKSTLESFEGEIRTLLREEKL 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                R    ++ + F ++  +E     +             D +           +   
Sbjct: 163 RNRGARVYGTQVIVRFTEADTREQARYVLRDRY--------PDMEFIERSVDGNPALIAR 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + +    AI Q++  +R R++ +G+SE  IQ+ G  RI++QLPG QD ++ R++L
Sbjct: 215 FTEKALIEEKRSAITQNISALRNRVNALGVSEPVIQQQGLDRIVVQLPGVQDSAKAREIL 274

Query: 207 GTTAKMSFHKVL-------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           G+TA + +              +      G +   + DG+  L+E  + ++G ++    A
Sbjct: 275 GSTATLEYRMQYGTYQDAVSVENGGRVPSGAKMYFERDGSPVLLERSIIVTGDNI-QNAA 333

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
               + ++P V ++ +  GA R + +T+DN+ +P+AVV         V++        Q 
Sbjct: 334 VTYDENNQPAVRVTLNGDGADRMYRITKDNVRRPMAVVYKETKFETRVVDGEEQRVARQE 393

Query: 320 SGNFTI------------------ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               ++                  + A  LA +LR+G+L   + IVEER +G  LG+++I
Sbjct: 394 ETVISVATVREPLSKQFITTGLQQDEAARLAILLRSGALKAPMEIVEERTIGPSLGAENI 453

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            KG  ++V GL L++ FM   Y  +GL+A+ ++  N+I  +A++SLL ATLTLP IAGIV
Sbjct: 454 DKGLASVVIGLCLVLGFMAFYYKVFGLIANVALVANIITIVAVMSLLQATLTLPGIAGIV 513

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERI+EE  +   V  ++  G+ +A+STI D+N+T  IA V+LF FG
Sbjct: 514 LTVGMAVDANVLIFERIKEELNRGAKVQEAIYQGYDKAFSTIADANVTTFIAAVLLFTFG 573

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
            G ++GFAIT+ + I  SMFTAI   R+++  I   +++K++ +      FL      I 
Sbjct: 574 TGPIKGFAITLSIGIATSMFTAIMGTRSIVNLIYGNRRLKTLPMGWS---FLKLKETKIP 630

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
           FMR RF  + +S +    +I  L + GL YGIDF GG  + V    P +LS +R  LE  
Sbjct: 631 FMRGRFMSLALSAVLVGGAITGLASKGLVYGIDFTGGYLVEVGYQEPAELSDIRDTLEQG 690

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              D   QNF   ++ L+R+Q + G       V E +   +         +  E VGP++
Sbjct: 691 GFPDAVVQNFGTARDVLIRIQPREGVESV--EVSEQIMGLLRAENAQVEQRRIEFVGPQV 748

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL   G + ++ + IA++IY+  RF+  F+LGA+  L+ D+  TLG FA  GIEF+LT
Sbjct: 749 GEELRESGGMALLFALIAIVIYLAFRFQLKFSLGAVAALVHDVLITLGVFAWTGIEFDLT 808

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            +AA+L +IGYS+ND +VV+DR+R+N  +        D+++ SIN+T+ R++ TS+   +
Sbjct: 809 VLAALLAVIGYSLNDTIVVFDRIRENFSIMRRGQPI-DIMNTSINQTISRTLMTSVTTML 867

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  +  +GG +I SFA+ +  G+V+   SS+FIA+  L+F+   + 
Sbjct: 868 VLTALFYFGGEIIHSFALALLVGVVIGTYSSVFIASTGLVFMKLTKE 914



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 94/263 (35%), Gaps = 4/263 (1%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
            +           + V+       + V    E                   +  Q+    
Sbjct: 355 RMYRITKDNVRRPMAVVYKETKFETRVVDGEEQRVARQEETVISVATVREPLSKQFITTG 414

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                     +  +   +     I     +GP +  E I KG+  V+I    +L ++   
Sbjct: 415 LQQDEAARLAILLRSGALKAPMEIVEERTIGPSLGAENIDKGLASVVIGLCLVLGFMAFY 474

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +K  F L A   L+ +I   +   +L      L  +A ++  +G +V+  V++++R+++ 
Sbjct: 475 YKV-FGLIANVALVANIITIVAVMSLLQATLTLPGIAGIVLTVGMAVDANVLIFERIKEE 533

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +         ++ I +  ++        ++  FI+ + +  +G   I  FAI ++ GI  
Sbjct: 534 L---NRGAKVQEAIYQGYDKAFSTIADANVTTFIAAVLLFTFGTGPIKGFAITLSIGIAT 590

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  ++I     I+  IY  R   
Sbjct: 591 SMFTAIMGTRSIVNLIYGNRRLK 613


>gi|114798705|ref|YP_761073.1| bifunctional preprotein translocase subunit SecD/SecF [Hyphomonas
           neptunium ATCC 15444]
 gi|114738879|gb|ABI77004.1| protein-export membrane protein SecD [Hyphomonas neptunium ATCC
           15444]
          Length = 840

 Score =  451 bits (1159), Expect = e-124,   Method: Composition-based stats.
 Identities = 395/832 (47%), Positives = 560/832 (67%), Gaps = 5/832 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR    +++ Y +I  IGLL ALPN L    +   P  +PK +I+LGLDLRGGSHLVLEV
Sbjct: 1   MRTTRTVLVTYILIILIGLLAALPNVLSPQQIAAMPDWLPKKQITLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D    +   L+  + E R+ +  E +    +    + +     D   +  I  ++   + 
Sbjct: 61  DGPALLADRLKSLAAETRTLMSTETVRGK-VEVTGDTVVARITDPDGRSRILSRLREQVT 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V          ++L+      I++ LS+      I+ AI QS+EI+RQR+DQ+G++E T
Sbjct: 120 QVQQAGFTGSVPDILIQPKGDTITLSLSEAGTADRINQAIGQSVEIVRQRVDQVGVAEPT 179

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-DGN 239
           IQR+G+ RIL+QLPG QDP+RLR+LLG+TA+MSFH V P         GV  L D+  G 
Sbjct: 180 IQRVGADRILVQLPGLQDPTRLRELLGSTAQMSFHMVAPETYGGEVPDGVTLLPDTKTGA 239

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           +  + D+V +SG  L+ A + FD +T++P+V   FD  G ++F E+T++N+GKP A+VLD
Sbjct: 240 EMPIYDRVALSGDRLSDARSGFDSQTNEPIVTFRFDAAGTKQFAEITKNNVGKPFAIVLD 299

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G+VLTAPVI   I  G  QI+G+FTIE   +L+A+LRAG+LP  L ++EER VG DLG+D
Sbjct: 300 GKVLTAPVIQGPILGGSGQITGDFTIEETAMLSALLRAGALPAPLTVIEERTVGPDLGAD 359

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            I  G    + G  L+V FM +LY  WGL+A F++FLNV LTL +L+ +GATLTLP IAG
Sbjct: 360 VISMGLYTGLIGFALVVAFMTLLYRGWGLIASFALFLNVALTLGILTFMGATLTLPGIAG 419

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I+LGIG+AVD+NIL+NERIREE++K  S   +LD GF+ AYSTI D+NIT LIAT +LF 
Sbjct: 420 IILGIGIAVDANILINERIREESKKGVSALAALDRGFNIAYSTILDANITTLIATALLFM 479

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
           FG G V+GFA+TM +   +S+FTA+++VR +M   +R++++K IDI     F L+PD   
Sbjct: 480 FGSGPVKGFAVTMIVGTGVSLFTAVTVVRVLMTAWVRHRRIKRIDI--EPLFRLVPDGSK 537

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM+AR++G+  SIL SI SI L    GLNYGIDF GGIQ+ +      +LS +R+ L 
Sbjct: 538 ISFMKARYFGIATSILLSIASIGLFINPGLNYGIDFTGGIQVEITTPGEANLSQLRAELG 597

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            L +G+++ Q   G+ + L+R+Q Q G   AQT  +  V++ ++EI P  +++ TE+VGP
Sbjct: 598 ELGLGEVALQQIGGKDDVLIRIQRQDGGEAAQTAAVNTVRQTLSEIDPGISVERTEVVGP 657

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+S EL R G++ V ++++AML YIW RF+W FA+GAI TL LD TK LGFF LFG++FN
Sbjct: 658 KVSGELARNGMIAVGLASLAMLFYIWWRFEWNFAIGAIVTLALDTTKMLGFFVLFGLDFN 717

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LTA+AA+LT IGYSVNDKVVVYDRMR+N++L       R +ID SIN+ L R ++TSM  
Sbjct: 718 LTAIAALLTFIGYSVNDKVVVYDRMRENIRL-AKRYDLRTVIDTSINQVLTRCIFTSMTT 776

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++++PMA+WGG+ + +FA+PM FG+++A  SSIFIAAPILL + +   ++ 
Sbjct: 777 LLAIVPMAIWGGNAVENFALPMVFGVLIATMSSIFIAAPILLLLGNLAQRHQ 828



 Score =  107 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  ++I  G+   +I    ++ ++ + ++  + L A   L L++  TLG     G  
Sbjct: 353 GPDLGADVISMGLYTGLIGFALVVAFMTLLYR-GWGLIASFALFLNVALTLGILTFMGAT 411

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  K     +S    +D+  N      +  ++
Sbjct: 412 LTLPGIAGIILGIGIAVDANILINERIREESK---KGVSALAALDRGFNIAYSTILDANI 468

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              I+   + ++G   +  FA+ M    +V    S+F A  ++  +     ++ RI
Sbjct: 469 TTLIATALLFMFGSGPVKGFAVTM----IVGTGVSLFTAVTVVRVLMTAWVRHRRI 520


>gi|329850434|ref|ZP_08265279.1| protein-export membrane protein SecD [Asticcacaulis biprosthecum
           C19]
 gi|328840749|gb|EGF90320.1| protein-export membrane protein SecD [Asticcacaulis biprosthecum
           C19]
          Length = 866

 Score =  451 bits (1158), Expect = e-124,   Method: Composition-based stats.
 Identities = 287/848 (33%), Positives = 475/848 (56%), Gaps = 29/848 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M  + W V L  +   +G+L +LPNFLP S+ D  P  +P   ++LGLDL+GGS+L++EV
Sbjct: 2   MSLSRWKVGLVLIATLLGILFSLPNFLPSSVKDSLPGFVPAKGLNLGLDLQGGSYLLVEV 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L    +++R+ L ++ I   +     N + +   D    ++    +     
Sbjct: 62  DTAALQRERLNNLVEQIRADLTEKKIATPTPIVDGNSVRVRIPDVSQVDDAYKSL-SRFP 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                         +    ++ + + L+++ I      A++ S+EI+R+RID++G  E +
Sbjct: 121 MALPNNPSAMDM-TVNRGPDQTLVVTLTEDGIRATSVRAVDTSIEIVRRRIDELGTKEPS 179

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------- 233
           I R G +RI+++ PGE DP  L++++GTTA+++FH V  + S +  + G           
Sbjct: 180 IARQGVNRIVVEAPGESDPDELKRIIGTTAQLTFHMVDDSVSPEATLAGQLPPGTMALPE 239

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             + G    +     +SG +L  A    D    +P +  +FD  GAR F ++TR+NIG+ 
Sbjct: 240 EGNGGQPLAIRKLAIVSGKNLVDAKTETDENG-QPAIGFAFDSEGARAFGDITRNNIGRR 298

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A+VLDG++++AP I  AI  GK QI+G   +  A     +L  G+LP  L   ++R V 
Sbjct: 299 FAIVLDGKIISAPRIIGAISGGKGQITGVDQV-EASETVKLLNGGALPAPLKFEQQRTVT 357

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATL 412
           A+LG+D++ KG  A +  ++ +++FM   YG  +G VA  ++ +N++L +  +S++ ATL
Sbjct: 358 AELGADAVQKGAIATLVAVICVIVFMFFSYGFLFGGVAVVALIVNLVLLIGGMSMMQATL 417

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAG++L + +AVD+N+L+ ER+R+E R  ++V  +LD GFSRA  TI D+N+T L 
Sbjct: 418 TLPGIAGLILTLAMAVDANVLIYERMRDEVRAGRNVISALDAGFSRAMETIIDANVTTLA 477

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           A  +++F G G V+GFA+T+ L ++ S+F+A+ + + ++    R  + K++ I    +  
Sbjct: 478 AAAIMYFLGAGPVKGFAVTLTLGVITSVFSAVLVTQILLGVWFRVSRPKTMPIADNVKPT 537

Query: 533 LIP------DCIAIQFMRARFWGVGISILFS------ICSICLLFTHGLNYGIDFKGGIQ 580
             P            F++      G+SIL                  GL  G+DFKGG  
Sbjct: 538 KWPLIKVLPQKTNFTFVKFAKLAGGVSILAVLASLFLAIYPATPPCGGLACGVDFKGGSA 597

Query: 581 LGVL-ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           L +  A + +DL+ +R  + S  +  +  Q  D      ++ +    D V +   +E VK
Sbjct: 598 LDITTAPQVIDLAKLRETMNSQGLKGVQVQGVDDGTAAQMKFETPGNDPVGK---VEQVK 654

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             + +  P +   NTE+VG K+S EL+  GI+ + ++   M+IYIW RF+W F LGA+  
Sbjct: 655 IALKKDFPTAAFSNTEVVGAKVSGELLTGGILALFMAIGLMMIYIWFRFEWQFGLGAVVA 714

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  D+T T G FALF +EF+L AVAA+LT+IGYS+ND VVV+DR+R+N++ Y   +   D
Sbjct: 715 LFHDVTLTFGLFALFKLEFDLRAVAAILTIIGYSMNDTVVVFDRLRENLRKY-KKMPLGD 773

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           LID SINETL R++ T + A +++  +AV GG  + SF++ M FGI +   SS+++AAP+
Sbjct: 774 LIDLSINETLSRTIITGVTAIMALTGLAVLGGETLLSFSVAMIFGIFIGTYSSVYVAAPV 833

Query: 820 LLFIYDWR 827
           +L     R
Sbjct: 834 ILLWGVNR 841



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 80/180 (44%), Gaps = 3/180 (1%)

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +    V  ++  + ++KG +  +++ I ++++++  + + F   A+  LI+++   +G 
Sbjct: 350 FEQQRTVTAELGADAVQKGAIATLVAVICVIVFMFFSYGFLFGGVAVVALIVNLVLLIGG 409

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            ++      L  +A ++  +  +V+  V++Y+RMR  ++      +    +D   +  + 
Sbjct: 410 MSMMQATLTLPGIAGLILTLAMAVDANVLIYERMRDEVRA---GRNVISALDAGFSRAME 466

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  ++    +   M   G   +  FA+ +  G++ +  S++ +   +L   +      
Sbjct: 467 TIIDANVTTLAAAAIMYFLGAGPVKGFAVTLTLGVITSVFSAVLVTQILLGVWFRVSRPK 526


>gi|315122649|ref|YP_004063138.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496051|gb|ADR52650.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 833

 Score =  447 bits (1150), Expect = e-123,   Method: Composition-based stats.
 Identities = 638/831 (76%), Positives = 742/831 (89%), Gaps = 2/831 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MRNNPWLV LY++ICCIG+L+ALPNFL QS LD FPS +PKNRI+LGLDLRGGSHLVLE 
Sbjct: 1   MRNNPWLVSLYAVICCIGMLVALPNFLSQSALDAFPSFVPKNRIALGLDLRGGSHLVLEA 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           DE+DF+ G LQM+  +L+SFLKKEG+ + S+RQ++NKI++SF+DS  K NI DKV  F +
Sbjct: 61  DEEDFIGGLLQMHLHDLQSFLKKEGVNILSLRQMKNKISISFSDSISKGNIVDKVRFFFR 120

Query: 121 GVNSKLNVDPKKN-LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           G+  KLN+D K N L+   ++++ISIVL    IDQ I+ AIEQSMEI+RQRIDQ+GISE 
Sbjct: 121 GIAFKLNLDQKNNFLITQNSDQDISIVLIPYKIDQAIARAIEQSMEIVRQRIDQMGISEP 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
           TIQRLGS+RILIQLPGEQ+PSRLRQLLGTTAKMSFH VL NN  KGF  G  FLRD++GN
Sbjct: 181 TIQRLGSNRILIQLPGEQNPSRLRQLLGTTAKMSFHNVLSNNRNKGFSLGASFLRDNNGN 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           QYLVEDK++ISG HLNGA A FDPKT++ VVDISFD++GAR FFEVTR+NIG+ LAVVLD
Sbjct: 241 QYLVEDKIQISGTHLNGAVARFDPKTNQSVVDISFDDIGARLFFEVTRNNIGRSLAVVLD 300

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G+VLTAPVINQAIP+GKAQISGNFTIETAG+LA MLRAG+LP+KLNIVEER+VGADLG D
Sbjct: 301 GKVLTAPVINQAIPNGKAQISGNFTIETAGVLAVMLRAGALPVKLNIVEERSVGADLGGD 360

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           SIYKGT AI+AGLVLI+LFMIVLYG+WGL+A+FSI LN+ILTLALLSLLGATLTLP IAG
Sbjct: 361 SIYKGTYAILAGLVLIILFMIVLYGRWGLLANFSILLNIILTLALLSLLGATLTLPGIAG 420

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVLGIGLAVDSNILVNERIREE+RKN+SVF SLDMGFSRAYSTI DSN+TALI+TV+LFF
Sbjct: 421 IVLGIGLAVDSNILVNERIREESRKNKSVFYSLDMGFSRAYSTIVDSNLTALISTVILFF 480

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
            G G VRGFA+TMGLSI++SMFTAISIVRAMMIFI+RYKK+KSI+I  L  F LIPD   
Sbjct: 481 CGSGPVRGFAVTMGLSIVVSMFTAISIVRAMMIFIVRYKKIKSINIRSLLGFSLIPDHTT 540

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I+FM+ARF G+G SI+ SI SI LLFTHGLNYGIDF GGIQ+GV A++PVDLS+VRSNLE
Sbjct: 541 IRFMKARFVGIGTSIILSIASISLLFTHGLNYGIDFDGGIQIGVYADKPVDLSIVRSNLE 600

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           SLQIGDISFQ+FDG+KNFLVRL+YQPG S AQ RVLE VKKKITEI+P + I +TEIVGP
Sbjct: 601 SLQIGDISFQSFDGDKNFLVRLKYQPGGSPAQARVLEEVKKKITEIIPFAKIPHTEIVGP 660

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           KISRELIRKG++GV++SA+AM IYIWIRF+W+FA+GAITTL+LDITKTLG F+LF +EFN
Sbjct: 661 KISRELIRKGVLGVVLSALAMFIYIWIRFEWHFAVGAITTLVLDITKTLGLFSLFDLEFN 720

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LTAVAA+LTLIGYSVNDK+VVYD MRKNM+L ++++SFR+LIDKSINETLGRSVYTSM+A
Sbjct: 721 LTAVAAILTLIGYSVNDKIVVYDCMRKNMRL-SSALSFRNLIDKSINETLGRSVYTSMSA 779

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           F+SVLPMA+WGGSV+ SFAIPMAFGI +AASSS+FIAAPILLFI DWR KN
Sbjct: 780 FLSVLPMAIWGGSVVSSFAIPMAFGIFIAASSSVFIAAPILLFIGDWRFKN 830


>gi|90419392|ref|ZP_01227302.1| protein-export membrane protein, SecD/SecF family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336329|gb|EAS50070.1| protein-export membrane protein, SecD/SecF family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 855

 Score =  446 bits (1147), Expect = e-123,   Method: Composition-based stats.
 Identities = 328/835 (39%), Positives = 500/835 (59%), Gaps = 20/835 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   IG+L A PN LPQ  LD+ PS  P+  ++LGLDL+GGS+++LEVD  
Sbjct: 5   SRWKTFLIWLTVAIGVLYAAPNVLPQQALDKLPSWFPQQSVTLGLDLQGGSYILLEVDSQ 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +Q   D+ R  L+ E IG   +      +T+   D        + ++     ++
Sbjct: 65  SLVADRVQTLRDDARQALRTERIGYAGLSDSDRTVTIRLRDPEQVAAAREALSPMTDPIS 124

Query: 124 S---KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           S          +  +       +++ L+   +    S A+ QS+E++R+R+D++G +E  
Sbjct: 125 SGSVLGGGAVTEVAIAEPQPGVLTLSLTDEGVAYRTSAAVTQSIEVVRRRVDELGTTEPV 184

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------- 232
           IQR G  RI++Q+PG  DP RL+ LL  TAK++F  V    S +    G R         
Sbjct: 185 IQRQGDDRIMVQVPGLGDPQRLKALLNQTAKLTFRLVDVTASAEDVARGSRPPAGSELLY 244

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
             D      LV+ ++ +SG +L  A A FD ++++PVV+I FD  GA+RF  VT+ N+G+
Sbjct: 245 TNDPTPAPVLVQRQIMVSGENLTDAQAGFDSQSNEPVVNIRFDTQGAQRFGAVTQQNVGR 304

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
           P A+VLD +VL+AP I +AI  G+AQISG+FT+++A  LA +LRAG+LP  LNI+EER V
Sbjct: 305 PFAIVLDEKVLSAPNIREAILGGQAQISGSFTVQSANDLAVLLRAGALPATLNIIEERTV 364

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG+DSI  G  A V G +L+V+FM+  YG  G++A+ ++ +N++L  A+L+++GATL
Sbjct: 365 GPGLGADSIAAGETAGVIGALLVVVFMLAAYGFLGIIANIALIVNLVLLFAVLTVIGATL 424

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAGIVL +G+AVDSN+L+ ERIR+E R+ +SV  ++D+GF +A +TI D+NIT LI
Sbjct: 425 TLPGIAGIVLTLGMAVDSNVLIYERIRDERRQGRSVVQAIDIGFQKALATILDANITTLI 484

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           A VVLFF G G VRGFA+T+ + I+ ++FTA ++ R ++   +R  + K +    +    
Sbjct: 485 AAVVLFFLGSGPVRGFAVTLAIGIITTVFTAFTLTRWLVAAWVRRSRPKELPRGFIR--- 541

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDL 591
           L+P+   I FM+ R     +S+L  + S+  LF  GLN GIDF GG  + V A     D+
Sbjct: 542 LVPEVTRIPFMKVRLQAFALSMLLCVASVGGLFAVGLNLGIDFTGGTLIEVQAKNGEADI 601

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R  L ++ + D   Q F      L+R+  Q GD       + +V+     +      
Sbjct: 602 GDIRERLGAIGVPDAQVQEFGTPTEALIRIGSQGGD----ASQVAIVESAQEALAADYDF 657

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           + TE+VGP +S EL    ++GV+ S  A+LIY+WIRF+W FALGAI   + D+  TLGF 
Sbjct: 658 RRTEVVGPTVSGELAFAAVIGVLASLFAILIYVWIRFEWQFALGAIIATVNDVFLTLGFL 717

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +  +EF+L +VAA+LT++GYS+ND VV+YD++R+N++ +   +    L+D S NE L R
Sbjct: 718 VVTQLEFSLASVAAILTIVGYSLNDTVVIYDKVRENLRRF-KKMPIGQLLDLSDNEMLAR 776

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +  TS    +++  + V+GG VI SF   M FG+ +   SSIF+AAP L+F    
Sbjct: 777 TTMTSATTLLALAALFVFGGEVIRSFVASMLFGVAIGTFSSIFVAAPALIFFKLR 831



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 72/173 (41%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I  G    +I A+ +++++   + +   + A   LI+++        + G  
Sbjct: 365 GPGLGADSIAAGETAGVIGALLVVVFMLAAYGFL-GIIANIALIVNLVLLFAVLTVIGAT 423

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R   +      S    ID    + L   +  ++
Sbjct: 424 LTLPGIAGIVLTLGMAVDSNVLIYERIRDERRQ---GRSVVQAIDIGFQKALATILDANI 480

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I+ + +   G   +  FA+ +A GI+    ++  +   ++          
Sbjct: 481 TTLIAAVVLFFLGSGPVRGFAVTLAIGIITTVFTAFTLTRWLVAAWVRRSRPK 533


>gi|163868673|ref|YP_001609882.1| bifunctional preprotein translocase subunit SecD/SecF [Bartonella
           tribocorum CIP 105476]
 gi|161018329|emb|CAK01887.1| protein-export membrane protein [Bartonella tribocorum CIP 105476]
          Length = 837

 Score =  442 bits (1137), Expect = e-122,   Method: Composition-based stats.
 Identities = 398/834 (47%), Positives = 557/834 (66%), Gaps = 8/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   WL  LY  I    + +ALPN      +      +P  R++LGLDL+GGS L+LEV
Sbjct: 1   MRTPGWLTTLYCFILLSSIYVALPNLFSHEQVKNS-KFLPDTRVALGLDLQGGSSLLLEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L +    +R+ L+++ I   S+R I++ + +  +D+   E     +   + 
Sbjct: 60  DSKTLKRDQLHIVLSNVRNTLREKQIRTSSVRIIEDSVVVLISDASQTEKARAALKTLIT 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            ++S      + N+ ++   + + + L++  I   +S+AIEQS+EIIR+RIDQ+G+SE  
Sbjct: 120 PIHSSF-GTTEHNITISAQNETLRVTLTEAGIKDRVSNAIEQSLEIIRRRIDQVGVSEPA 178

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238
           IQ++G+ RI++QLPG QDP +LR LLGTTAKMSFH V  N        GV  L     + 
Sbjct: 179 IQKVGNDRIMVQLPGLQDPKQLRDLLGTTAKMSFHLVPSNVDPNNPPIGVSILPGYTDET 238

Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +Y + D++ + G  L  A A F      + ++  + D  GA+ F ++TR NI +P A+V
Sbjct: 239 QRYAIYDQIALDGNVLKDARAGFDPQIPGRSIISFTLDSAGAKIFADITRQNINRPFAIV 298

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +VLTAP IN  IP+G+ QI+GNF  + A  LAA+LRAGSLP  L ++EER VG +LG
Sbjct: 299 LDNKVLTAPTINSVIPNGQGQITGNFDAKEASTLAALLRAGSLPAPLTVIEERTVGPNLG 358

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +D+I  G    + G +L+ +F+ +LY  WGL+A+ ++ L+ ILT A LSLLGATLTLP I
Sbjct: 359 ADAIQMGLYTGIIGFMLVAIFIFLLYRIWGLIANIALALHTILTFAALSLLGATLTLPGI 418

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE+RK  S F +LD GF +A++TI D+N+TA+IATV+L
Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGVSAFAALDRGFKQAFATIVDANVTAIIATVLL 478

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F+FG G VRGFA+TM L I+ISMFT I+IVR +MI+I+R  K+K++ I   S F +IP  
Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTNITIVRIIMIWIVRKWKIKNLHI--HSAFSIIPQN 536

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               FM+ARF G+G+SI+ SI S+ L F  GLN+GIDF GG Q+ +    P DL+ +RS 
Sbjct: 537 TTFHFMKARFIGIGVSIILSIASVFLFFKPGLNFGIDFIGGSQMSITTKVPADLATLRSK 596

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L  L IG+I+ QN D E   L+R+Q Q G    QT  ++ VK  +  I P +T    E+V
Sbjct: 597 LSVLNIGEITLQNIDNENTVLIRMQKQSGSEAQQTIAIDKVKTAVQNIYPDTTFDQIEVV 656

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPKIS EL       VI++AIAM +YIW+RF+W+FA+GAI TLILD TK +GFFALF  +
Sbjct: 657 GPKISGELATAAFTAVILAAIAMTLYIWLRFEWFFAIGAIVTLILDTTKMIGFFALFQFD 716

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY   +  R+LID SIN+ L R  +TS 
Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KKMPLRELIDLSINQVLVRCFFTSA 775

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +++LPMA+WGGS + +FA+PM FGI++A SSSIFIAAPILL + +W  + +
Sbjct: 776 TTILAMLPMAIWGGSAVHNFALPMVFGIIIATSSSIFIAAPILLLLGNWWRERS 829


>gi|240850338|ref|YP_002971731.1| protein-export membrane protein [Bartonella grahamii as4aup]
 gi|240267461|gb|ACS51049.1| protein-export membrane protein [Bartonella grahamii as4aup]
          Length = 837

 Score =  442 bits (1136), Expect = e-121,   Method: Composition-based stats.
 Identities = 395/834 (47%), Positives = 552/834 (66%), Gaps = 8/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   WL  LY  I    + +ALPN      +      +P  R++LGLDL+GGS L+LEV
Sbjct: 1   MRTPGWLTTLYCFILLSSIYVALPNLFSYEQVKNS-KFLPDTRVALGLDLQGGSSLLLEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L +    +R+ L+++ I   S+R +++ I    +D    E     +   + 
Sbjct: 60  DSKTLKRDQLHIVLSSVRNVLREKQIRTSSVRIVEDSIIALISDPSQTEKALSALKTLIT 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            ++S      + N+ ++   + + + L++  I   +S+AIEQS+EIIR+RIDQ+G+SE  
Sbjct: 120 PIHSSF-GTTEHNITISAQNETLRVTLTEAGIKDRVSNAIEQSLEIIRRRIDQVGVSEPA 178

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQ++G+ RI++QLPG QDP +LR LLGTTAKMSFH V  N        GV  L       
Sbjct: 179 IQKVGNDRIMVQLPGLQDPKQLRDLLGTTAKMSFHLVPSNVDPNNPPIGVSILPGYTDAT 238

Query: 241 --YLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Y + D++ + G  L  A A F      + ++  + D  GA+ F ++TR NI +P A+V
Sbjct: 239 QHYAIYDQIALDGNVLKDARAGFDPQIPGRSIISFTLDSAGAKIFADITRQNINRPFAIV 298

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +VLTAP IN  IP+G+ QI+GNF  + A  LAA+LRAGSLP  L ++EER VG +LG
Sbjct: 299 LDNKVLTAPTINSVIPNGQGQITGNFDPKEASTLAALLRAGSLPAPLTVIEERTVGPNLG 358

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +D+I  G    + G +L+ +F+ +LY  WGL+A+ ++ L+ ILT A LSLLGATLTLP I
Sbjct: 359 ADAIQMGLYTGIIGFILVAIFIFLLYRIWGLIANIALALHTILTFAALSLLGATLTLPGI 418

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE+RK  S F +LD GF  A++TI D+N+TA+IATV+L
Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGVSAFAALDRGFKHAFATIVDANVTAIIATVLL 478

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F+FG G VRGFA+TM L I+ISMFT I+IVR +MI+I+R  K+K + I   S F ++P+ 
Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTNITIVRIIMIWIVRKWKIKKLHI--HSAFNIMPEN 536

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               FM+ARF G+G+SI+ S+ S+ L F  GLN+GIDF GG Q+ +    P DL+ +RS 
Sbjct: 537 TTFHFMKARFIGIGVSIVLSMASVFLFFKPGLNFGIDFIGGSQMSITTKAPADLATLRSK 596

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L IG+++ QN D E   L+R+Q Q G    QT  ++ VK  +  I P +T    E+V
Sbjct: 597 LSTLNIGEVTLQNIDNESTVLIRMQKQSGSEAQQTIAIDKVKTAVQNIYPDTTFDQIEVV 656

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPKIS EL       VI++AIAM +YIW+RF+W+FA+GAI TLILD TK +GFFALF  +
Sbjct: 657 GPKISGELATAAFTAVILAAIAMSLYIWLRFEWFFAIGAIITLILDTTKMIGFFALFQFD 716

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY   +  R+LID SIN+ L R  +TS 
Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KKMPLRELIDLSINQVLVRCFFTSA 775

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +++LPMA+WGGS + +FA+PM FGI++A SSSIFIAAPILL + +W  +  
Sbjct: 776 TTILAMLPMAIWGGSAVHNFALPMVFGIIIATSSSIFIAAPILLLLGNWWRERN 829


>gi|254450884|ref|ZP_05064321.1| protein-export membrane protein SecD [Octadecabacter antarcticus
           238]
 gi|198265290|gb|EDY89560.1| protein-export membrane protein SecD [Octadecabacter antarcticus
           238]
          Length = 877

 Score =  440 bits (1131), Expect = e-121,   Method: Composition-based stats.
 Identities = 296/862 (34%), Positives = 466/862 (54%), Gaps = 39/862 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSA 38
           ++ + W      ++   G+L+A+PN                         ++    +PS 
Sbjct: 2   LKIDLWKRTAIWLVVAFGILVAMPNGFYSKVEMSNDAEASIVKSGTTPELEAAAADWPSF 61

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV---FSMRQIQ 95
           +P N ++LGLDLRGG+ L+ EV  +      ++    E+R  L  +   V     +    
Sbjct: 62  LPDNLVNLGLDLRGGAQLLAEVKVEQVYEQRMRGMWPEVRDVLAAQRDVVGFVTDVSITS 121

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
            ++ +  ++    +   +      Q   S  +V      +   +  ++ I LSQ      
Sbjct: 122 GELRVRISEPAGMDRALELARGLAQQGGSVTSVGETDIEVSAVSATDLVITLSQAEQVAT 181

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
               + Q++EI+R+RID+ G  E +IQR G++RILIQ+PG      ++ ++GTTA++ FH
Sbjct: 182 DDRTVRQALEIVRRRIDETGTREPSIQRQGANRILIQVPGVGSAQEVKDIIGTTAQLGFH 241

Query: 216 KVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
            V+ + +      G         D +G  Y+VE    ++G  L  +   F+    +P V 
Sbjct: 242 PVVGSTADPDARAGAGNMVIPSLDVEGQYYIVERSPVVTGEELVDSQPTFNENN-QPAVT 300

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
             F+  GAR+F + TRDNIG P A+VLD  V++AP I   I  G   I+G FT+E    L
Sbjct: 301 FRFNPSGARKFGDYTRDNIGSPFAIVLDNEVVSAPTIQSHISGGLGIITGQFTLEETTNL 360

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +LRAG+LP +LN ++E+ VG DLG DSI  GT A +    L++++M++ YG  G+ A+
Sbjct: 361 AVLLRAGALPAELNFLQEQTVGPDLGQDSINAGTIACIVAFALVLIYMVLSYGLLGVFAN 420

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ +NV L  A+LSL+G TLTLP IAGIVL IG+AVD+N+L+ ERIREE+R  +    +
Sbjct: 421 VALLVNVALIFAMLSLIGGTLTLPGIAGIVLTIGMAVDANVLIFERIREESRTAKGPARA 480

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           +++G+ +A S I D+NIT LI   +LF  G G VRGFAIT+GL I+ S+FTAI + R ++
Sbjct: 481 IELGYEKALSAIIDANITTLITAGILFAMGAGPVRGFAITLGLGIITSVFTAIFVTRLLV 540

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
           +     K+ K I         L+    A  F +     +G+S +  + +       GLNY
Sbjct: 541 VIWFERKRPKKILAG--KYLRLVKSETAFDFFKRGKIWLGLSGIMVVVAFISFLAQGLNY 598

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQP 625
           GIDFKGG  L   + + +D+   R  +  L IG+              +    V +  Q 
Sbjct: 599 GIDFKGGTTLRTDSTQVIDVGAYRDAVLVLDIGEVTVTEVFDPTFGPDQNVATVAISAQD 658

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
           G+       +  V+  +  I P  T    E VGP +S ELI+  I+ V+ +  A+LIYIW
Sbjct: 659 GEESVTNDTISAVQDALRTIDPDMTFPAVESVGPTVSGELIQSAILAVVFAIGAVLIYIW 718

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +RF+W FALGA+  LI D+  T+G F+   I F+L  +AA+LT++GYS+ND VVV+DR+R
Sbjct: 719 MRFEWQFALGAVVALIHDVVLTIGIFSELNIRFDLAIIAALLTIVGYSLNDTVVVFDRVR 778

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +N++ Y  +   +++++ SINETL R+  TS    ++++ + V GG VI  F   M +G+
Sbjct: 779 ENLRKY-KAKDLKEVLNLSINETLSRTFMTSFTTLLALISLYVLGGDVIRGFVFAMIWGV 837

Query: 806 VVAASSSIFIAAPILLFIYDWR 827
           +V   SSIF+A+  LL +   R
Sbjct: 838 IVGTYSSIFVASTTLLVLGVKR 859



 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                + VGP + ++ I  G +  I++   +LIY+ + +     + A   L++++     
Sbjct: 374 NFLQEQTVGPDLGQDSINAGTIACIVAFALVLIYMVLSYGLL-GVFANVALLVNVALIFA 432

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             +L G    L  +A ++  IG +V+  V++++R+R+  +   T+      I+    + L
Sbjct: 433 MLSLIGGTLTLPGIAGIVLTIGMAVDANVLIFERIREESR---TAKGPARAIELGYEKAL 489

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  ++   I+   +   G   +  FAI +  GI+ +  ++IF+   +++  ++ +  
Sbjct: 490 SAIIDANITTLITAGILFAMGAGPVRGFAITLGLGIITSVFTAIFVTRLLVVIWFERKRP 549

Query: 830 NA 831
             
Sbjct: 550 KK 551


>gi|304311334|ref|YP_003810932.1| Protein-export membrane protein [gamma proteobacterium HdN1]
 gi|301797067|emb|CBL45280.1| Protein-export membrane protein [gamma proteobacterium HdN1]
          Length = 841

 Score =  437 bits (1124), Expect = e-120,   Method: Composition-based stats.
 Identities = 329/829 (39%), Positives = 513/829 (61%), Gaps = 9/829 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR     + +YS++  IGLL A+PNFL   +  + P  + +N+I LGLDLRGGSHL+LEV
Sbjct: 1   MRQFRARIWIYSIVILIGLLSAVPNFLTPELASKLPEGLAQNKIVLGLDLRGGSHLLLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +   ++ + S L+K GI      + Q+   ++  ++   E  A       +
Sbjct: 61  ETPALSADRMYQNAEVISSELRKAGISHLRPAKTQDSAKITLKNASDFEKAAGIARSKAK 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                   +      V      +++V +   I  +   A E+S++++R+R+D+ G+ + T
Sbjct: 121 Q-------NGVIQFTVEQQGTSMALVPTPEMILGLKQDAAERSIDVLRRRLDETGVVDPT 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           I R G+  IL+QLPG  +P+ +R+LLG TA+++FH V+    +     G   L    G+ 
Sbjct: 174 ITRQGADSILVQLPGVSNPAHIRELLGKTARLTFHLVVEEGERSRG--GAMTLPSQQGDS 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +E +  + G HL  A   ++  T +P+V+   D +GA+RF ++T+++IG+ LAVVLDG
Sbjct: 232 VRLEQRTLLDGAHLADARLGYNQNTGEPLVNFHLDAIGAKRFAKITKESIGRALAVVLDG 291

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           RV+TAPVI   I  G  +I+G FT+  A  LA +LRAG+LP  L ++EER VG DLGSD+
Sbjct: 292 RVITAPVIRGVIGGGSGEITGGFTVTEAKDLALLLRAGALPAPLKVIEERTVGPDLGSDA 351

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G    + G+ L+ +F++ LYG+WG++AD ++ LN+ L++ +LS  GATLTLP IAG+
Sbjct: 352 IQMGVTTGLLGMALVFIFIVTLYGRWGVIADVALALNIGLSVGVLSAFGATLTLPGIAGL 411

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L IG+AVD+NIL+NERIREE  K  +   +L  GF RAY+TI DSN+T LIA  +LF F
Sbjct: 412 ILSIGMAVDANILINERIREEVNKTHNALDALAAGFDRAYATIIDSNLTTLIAISLLFLF 471

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G G ++GFA+ M + +++S+FTAIS+ R +M + +R     SI +  L     I     I
Sbjct: 472 GSGPIKGFAVAMAVGLVVSLFTAISVTRLLMEWRVRRGNHTSISMKGLLPLERIQPDKPI 531

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           +F+ AR  G+  S + S  SI L+F  GL+ GIDF+GG  + +  N  + +  +R+  + 
Sbjct: 532 KFLNARVAGLTFSAVLSAASIALMFYPGLSKGIDFQGGNVIELRTNPQISVEKLRAAFQQ 591

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
             + +I+ Q F    +F+VR      +  A   V++ +K+ + +  P +     EIVGPK
Sbjct: 592 AGLKEIAIQEFGAPGSFMVRSPLVSSEDAASGGVVDQIKEVVLKEDPHAEFPRVEIVGPK 651

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +S       ++ ++++   M +Y+WIRF+++FA+ A+ TL+LD+TK LGFFAL G+EFNL
Sbjct: 652 VSGSFADTSVLALLLAGGGMFVYLWIRFEFHFAIAALATLVLDMTKMLGFFALTGVEFNL 711

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           +AVAA+L LIGYSVNDKVVV+DR+R+ ++    +I  ++L+D SI  TL R+++TS+  F
Sbjct: 712 SAVAALLALIGYSVNDKVVVFDRIREFLRKGQRNIDLKELMDLSITSTLTRTIFTSVTTF 771

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +LPM + GG+ + SFA+PM FGIV+  SSSIFIAAPIL  + + R +
Sbjct: 772 LCLLPMGIAGGAAVSSFALPMLFGIVLGTSSSIFIAAPILYLLGERRIR 820



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/174 (20%), Positives = 83/174 (47%), Gaps = 8/174 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G+   ++    + I+I   +   + + A   L L+I  ++G  + FG  
Sbjct: 344 GPDLGSDAIQMGVTTGLLGMALVFIFIVTLYG-RWGVIADVALALNIGLSVGVLSAFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+ +     + +  D +    +      + +++
Sbjct: 403 LTLPGIAGLILSIGMAVDANILINERIREEV---NKTHNALDALAAGFDRAYATIIDSNL 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I++  + ++G   I  FA+ MA G+VV    S+F A  +   + +WR +  
Sbjct: 460 TTLIAISLLFLFGSGPIKGFAVAMAVGLVV----SLFTAISVTRLLMEWRVRRG 509


>gi|149913917|ref|ZP_01902449.1| protein-export membrane protein SecD [Roseobacter sp. AzwK-3b]
 gi|149812201|gb|EDM72032.1| protein-export membrane protein SecD [Roseobacter sp. AzwK-3b]
          Length = 877

 Score =  437 bits (1123), Expect = e-120,   Method: Composition-based stats.
 Identities = 300/824 (36%), Positives = 470/824 (57%), Gaps = 19/824 (2%)

Query: 18  GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL 77
            +    P          +P  +P   ++LGLDLRGG+HL+ EV   D     ++    E+
Sbjct: 41  AIEAGSPTPQLVEDAGLWPDFLPSGLVNLGLDLRGGAHLLAEVQVADVYQSRIESMWPEI 100

Query: 78  RSFLKKEGIGVFSMR---QIQNKITLSFADSRF-KENIADKVTLFLQGVNSKLNVDPKKN 133
           R  L++E   V  +R       ++ +   D     E  A  V    + V S         
Sbjct: 101 RDLLREERDRVGPIRLQPTQAAELRVRLMDRPDEVEYAAGLVRGLARPVTSLTGAGASDI 160

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            + T    EI + LS+          + Q++EIIR+RID++G  E TIQR G+ RILIQ+
Sbjct: 161 EVSTE-GDEIVVRLSEAEQRATDDRTVRQALEIIRRRIDEVGPREPTIQRQGADRILIQV 219

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEI 249
           PG    + L++++GTTA+++F  V+          G         D +G  Y++E    +
Sbjct: 220 PGVGSAAELKEIIGTTAQLTFQPVVSRTQNADDTLGAGNEILPSMDQEGTFYILERAPVV 279

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           +G  L  A  +FD    +P V   FD  GAR+F + T +NIG P A+VLDG V++APVI 
Sbjct: 280 TGDELVDAQPDFDQNG-RPAVSFRFDPTGARKFGDYTAENIGSPFAIVLDGEVISAPVIQ 338

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             IP G   I+GNFT+E +  LA +LRAG+LP  L  +EER +G +LG+DSI  G  A +
Sbjct: 339 SHIPGGSGIITGNFTVEESTSLAVLLRAGALPAGLEFLEERTIGPELGADSIEAGQIACI 398

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
              V++++FM + YG +G+ A+ ++ +NV L   LLSL+GATLTLP IAGIVL IG+AVD
Sbjct: 399 VAFVMVLVFMFMAYGTFGIFANIALIINVGLIFGLLSLIGATLTLPGIAGIVLTIGMAVD 458

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +N+LV ERIREE +  +    ++++G+ +A S I D+NIT  I  ++L+  G G VRGFA
Sbjct: 459 ANVLVFERIREEMKSAKGPARAIELGYEKALSAITDANITTFITALILYAMGSGPVRGFA 518

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           IT+GL I+ S+FTA+ + R ++I     K+ KS+         L+P      F +     
Sbjct: 519 ITLGLGIITSVFTALFVTRLIVIIWFERKRPKSV--LQGRSIRLVPQITNWDFFKRWRLS 576

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD---- 605
           +G+S +  + +       GLNYGIDF+GG  +   A +PVD+ + R  ++ LQ+GD    
Sbjct: 577 LGLSAVLIVIAGGSFLLQGLNYGIDFRGGTTIRTEAPQPVDIGLYRDAIQPLQLGDVSIT 636

Query: 606 --ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                   + +   ++R+Q Q G+    + V+  V+  +  + P     + E VGPK+S 
Sbjct: 637 EVFDPTFAEDQNVAMIRVQAQEGEEAVSSDVIAQVETALQAVSPDLKFTSVESVGPKVSG 696

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           ELI   ++ V ++  A+LIYIW+RF+W FALGA+  L+ D+  T+G F+   I+F+L  +
Sbjct: 697 ELITTAMIAVALAIGAVLIYIWLRFEWQFALGAVIALVHDVVLTIGIFSELQIQFDLAII 756

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA+LT++GYS+ND VVV+DR+R+N++ Y       ++++ SINETL R++ TS+   +++
Sbjct: 757 AALLTIVGYSLNDTVVVFDRVRENLRKYKKK-PLAEVLNISINETLSRTLITSVTTLLAL 815

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + + + GG VI  F   M +G++V   SS+F+A+ +LL++   R
Sbjct: 816 IALFILGGDVIRGFVFAMIWGVIVGTYSSVFVASTMLLWLGVKR 859



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 89/176 (50%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++  + I  G +  I++ + +L+++++ +   F + A   LI+++    G  +L G
Sbjct: 380 TIGPELGADSIEAGQIACIVAFVMVLVFMFMAYG-TFGIFANIALIINVGLIFGLLSLIG 438

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V+V++R+R+ MK   ++      I+    + L      
Sbjct: 439 ATLTLPGIAGIVLTIGMAVDANVLVFERIREEMK---SAKGPARAIELGYEKALSAITDA 495

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++  FI+ L +   G   +  FAI +  GI+ +  +++F+   I++  ++ +   +
Sbjct: 496 NITTFITALILYAMGSGPVRGFAITLGLGIITSVFTALFVTRLIVIIWFERKRPKS 551


>gi|304321623|ref|YP_003855266.1| hypothetical protein PB2503_10364 [Parvularcula bermudensis
           HTCC2503]
 gi|303300525|gb|ADM10124.1| hypothetical protein PB2503_10364 [Parvularcula bermudensis
           HTCC2503]
          Length = 875

 Score =  436 bits (1121), Expect = e-120,   Method: Composition-based stats.
 Identities = 286/860 (33%), Positives = 483/860 (56%), Gaps = 37/860 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++ N W +     +  +G+  +LPNF  +   D  P  +P+  ++LGLDL+GG++L+L V
Sbjct: 2   LQFNRWQIGSVIALIVLGVYFSLPNFFAE---DERPGFLPETTVTLGLDLQGGTYLLLGV 58

Query: 61  DEDDFVNGFLQMYSDELRSFLKK-----EGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           D D  +   +     ++   L+         G  S+ +    +++   D    +   D +
Sbjct: 59  DTDGVLVDRITSIQSDVAGRLRNAPGGRIRFGRISVDRENLSLSVPITDPADVDRAMDSL 118

Query: 116 TL---FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
                 L G  + +    ++  +       I + L+          A+  S+E+IR+RID
Sbjct: 119 RRLSGTLGGGVAGIAGAGRELRISRGEGTVILVALTDEAQSFYADEAVSDSIEVIRRRID 178

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL---PNNSKKGFMFG 229
            +G +E +IQR G+ R+++Q+PG  D   +R++L    ++SFH V       +       
Sbjct: 179 SLGTTEPSIQRQGADRLVVQVPGNSDSEGIRRVLDAQGQLSFHMVDGTADPTAPTPPRRL 238

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L +  G   ++ +  +++G  +  A+A+ +       V+  FD  GARRF  VTR+N
Sbjct: 239 TLPLAEFPGQSIVIFENPDVTGDMVTSASASPNADGPGFQVNFGFDNRGARRFGNVTREN 298

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           IG+  A+VLD  V++AP I  AI  G  +I+G+F+ E A  LA ++R+G+LP +L  +E+
Sbjct: 299 IGRQFAIVLDDTVISAPRIQSAITGGSGRITGSFSPEEAQELAVLIRSGALPAELTTIEQ 358

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VGADLG+DS+  GT A++ G + +V+F++++Y + G+ AD ++F NV+L    LSLLG
Sbjct: 359 RTVGADLGADSVRAGTIALILGFIGVVIFIVLVYLRMGIYADIALFANVLLMAGALSLLG 418

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP IAGIVL IG+AVD+N+L+ ERI+EE    +    +++ G+  A+S IFD+N+T
Sbjct: 419 ATLTLPGIAGIVLTIGMAVDANVLIFERIKEEISSGKGAVAAVEAGYRNAWSAIFDANLT 478

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDIN 526
            LIA  ++F  G G VRGFA+T+G+ ++ S+FTA  + R  +       R +K K+    
Sbjct: 479 TLIAAFLMFMLGAGPVRGFAVTLGIGVVTSVFTAFVLTRLFIGAHVLGQRRRKGKASSTR 538

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 LIPD   I F   R     +S +  + SI  + T GLN+G+DF+GG+ + V   
Sbjct: 539 FGGGLKLIPDDTHIHFASMRNIAAILSAVAIVVSIGAVMTKGLNFGVDFRGGVTVEVGPA 598

Query: 587 RPV-----DLSVVRSNLESLQIGDISFQNFDGE-------------KNFLVRLQYQPGDS 628
                   DL+ VR+ + +L +GD+  +   G              ++     +  P   
Sbjct: 599 EGQTFANEDLTQVRAAVGTLDLGDVQAKTIGGVAGAPDGIAVTVPLQDAETGGEIDPEAE 658

Query: 629 VAQTRVLEMVKKKITE-IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             Q  V   +++ +TE +    + + T+IVGP +S ELI++G   ++++   ML+YIW R
Sbjct: 659 ARQVEVANQLRQTLTEVLGAEISFRRTDIVGPTVSGELIQRGAGALLLAIGLMLVYIWFR 718

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           F+W F+LGAI  L+ D+  T+G F++   +F L+ +AA+LT+IGYS+ND VVV+DR+R+N
Sbjct: 719 FEWQFSLGAIIALVHDVILTIGIFSITQFDFTLSVIAALLTIIGYSMNDTVVVFDRIREN 778

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++ +  S    +++D SIN+TL R++ TS+   ++++ + ++GG V+  F+  + +GI+V
Sbjct: 779 LRKF-KSKPLTEVVDLSINQTLSRTIMTSVTTLVALVSLFLFGGEVLRGFSFALIWGILV 837

Query: 808 AASSSIFIAAPILLFIYDWR 827
              SS+FIA+P LL     R
Sbjct: 838 GTYSSVFIASPTLLRTGVKR 857


>gi|149204170|ref|ZP_01881138.1| protein-export membrane protein SecD [Roseovarius sp. TM1035]
 gi|149142612|gb|EDM30657.1| protein-export membrane protein SecD [Roseovarius sp. TM1035]
          Length = 878

 Score =  434 bits (1116), Expect = e-119,   Method: Composition-based stats.
 Identities = 310/858 (36%), Positives = 478/858 (55%), Gaps = 40/858 (4%)

Query: 6   WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43
           W  +       +GL++ALPN                            L  +P  MP + 
Sbjct: 7   WKRLCIWGTVALGLMLALPNGFYGKVERHNDAVVAVEAGADPASVADDLALWPGWMPSSL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSF 102
           ++LGLDLRGG+HL+ EV  +D     ++    E+R  L++E   V  +R  Q ++  L  
Sbjct: 67  VNLGLDLRGGAHLLAEVKVEDVYQARVEGMWPEVRDLLREERDSVGPIRLQQTDEPELRV 126

Query: 103 ADSRFKE---NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
                 E     A  V    + V   L      ++ VTT   +I I LS+          
Sbjct: 127 RLVERPEMATEAAALVRGLARPVTDVLTGVGGSDIEVTTDGADIIIRLSEAEQRATDDRT 186

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           + QS+EIIR+RID++G  E TIQR G+ RILIQ+PG    + L+ L+GTTA+++F  V+ 
Sbjct: 187 VRQSLEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSAAELKALIGTTAQLTFQPVIS 246

Query: 220 NNSKKGFMF----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
             +           V    D  G  Y++E    ++G  L  A  +FD    +P V   F+
Sbjct: 247 RAASADAPAGAGNEVLPSLDEAGVYYILERAPVVTGEELVDAQPDFDQNG-RPAVSFRFN 305

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
             GAR+F + T +NIG P A+VLDG V++APVI   I  G   I+GNF +E +  LA +L
Sbjct: 306 PTGARKFGDYTAENIGNPFAIVLDGEVISAPVIQSHIAGGSGIITGNFNVEDSTQLAVLL 365

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           RAG+LP  L  +EER VG +LG+DSI  G  A +    L++++MIV YG +G+ A+ ++ 
Sbjct: 366 RAGALPAGLEFLEERTVGPELGADSIEAGKLACLVAFALVLVYMIVSYGIFGIFANIALI 425

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           +NV L   LLSL+G+TLTLP IAGIVL IG+AVD+N+LV ERIREE +  +    ++++G
Sbjct: 426 VNVGLIFGLLSLIGSTLTLPGIAGIVLTIGMAVDANVLVFERIREEMKSAKGAARAIELG 485

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           + +A S I D+NIT  +  ++L+  G G VRGFAIT+GL I+ S+FTA+ + R + +   
Sbjct: 486 YEKAMSAIVDANITTFMTALILYVMGSGPVRGFAITLGLGIVTSVFTALFVTRLITVMWF 545

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
             K+ K++       F L+P+  +  F       +GIS +  + +       GLN+GIDF
Sbjct: 546 ERKRPKTVLAG--RGFRLVPEITSWDFFSRWKLWLGISGVMILVAFGSFAVQGLNFGIDF 603

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSV 629
           KGG  +  L+  PVD+   R+    + +GD              E   ++R+Q Q     
Sbjct: 604 KGGTTIRTLSAEPVDIGAYRAATNDMGLGDVSITEVFDPTFGPEENVAMLRIQAQDETES 663

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                +  V+  + + VP     + E VGPK+S ELI+  ++ V ++  A+L+YIW+RF+
Sbjct: 664 VTPETIAAVEAALQQAVPDIQFTSVESVGPKVSGELIKTAVLAVALAIGAVLVYIWMRFE 723

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W FA+GA+  L+ D+  T+G F+   I+F+L  +AA+LTL+GYS+ND VVV+DR+R+N++
Sbjct: 724 WQFAVGAVIALVHDVALTIGVFSELQIQFDLAIIAALLTLVGYSLNDTVVVFDRVRENLR 783

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
            Y      R++++ SINETL R++ TS+   +++L + V GG VI  F   M +G++V  
Sbjct: 784 KY-KQRPLREVLNLSINETLSRTMVTSLTTLLALLALYVLGGDVIRGFVFAMIWGVIVGT 842

Query: 810 SSSIFIAAPILLFIYDWR 827
            SSIF+A+ +L+++   R
Sbjct: 843 YSSIFVASTVLMWLGIKR 860



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 86/173 (49%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  + I  G +  +++   +L+Y+ + +   F + A   LI+++    G  +L G  
Sbjct: 383 GPELGADSIEAGKLACLVAFALVLVYMIVSYGI-FGIFANIALIVNVGLIFGLLSLIGST 441

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V+V++R+R+ MK   ++      I+    + +   V  ++
Sbjct: 442 LTLPGIAGIVLTIGMAVDANVLVFERIREEMK---SAKGAARAIELGYEKAMSAIVDANI 498

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             F++ L + V G   +  FAI +  GIV +  +++F+   I +  ++ +   
Sbjct: 499 TTFMTALILYVMGSGPVRGFAITLGLGIVTSVFTALFVTRLITVMWFERKRPK 551


>gi|121602716|ref|YP_989164.1| bifunctional preprotein translocase subunit SecD/SecF [Bartonella
           bacilliformis KC583]
 gi|120614893|gb|ABM45494.1| protein-export membrane protein SecD/SecF [Bartonella bacilliformis
           KC583]
          Length = 834

 Score =  433 bits (1113), Expect = e-119,   Method: Composition-based stats.
 Identities = 393/835 (47%), Positives = 558/835 (66%), Gaps = 8/835 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   WL  LY +I   G+ +ALPN   Q  ++     +P  +++LGLDL+GGS L+LEV
Sbjct: 1   MRTPRWLTTLYCLILLSGIYVALPNLFSQEQIENS-KFLPNTQVTLGLDLQGGSSLLLEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        LQ   + +R+ L+++ I   S+R I+N +    +D    +     +   + 
Sbjct: 60  DAKTLKRDQLQTVLNNVRAKLREKKIRTSSIRIIENNVVAVLSDLTKNQEAITALKTLIT 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +N+   V      +     + I + L++  I   IS+AIEQS+EIIR+RIDQ+G++E  
Sbjct: 120 PINNSFGVTTNNISIH-AQNETIHVTLTEAAIKDRISNAIEQSLEIIRRRIDQVGVTEPA 178

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR--DSDG 238
           IQ++G+ RI++QLPG QDP +LR LLGTTAKM+FH V  N        GV  L   +++ 
Sbjct: 179 IQKVGTDRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPANVDLNNPPAGVSILPGYNNEN 238

Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +Y + D+V + G  L  A A F      + ++  + + +G+R F E+TR NI +P A+V
Sbjct: 239 QRYAIYDQVALDGNVLKDARAGFDPQIPGRSIISFTMNSIGSRIFAEITRQNINRPFAIV 298

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +VLTAP+IN  IP+G+ QI+GNF  + A  LAA+LRAGSLP  L ++EER VG +LG
Sbjct: 299 LDSKVLTAPIINGVIPNGQGQITGNFDPKEASTLAALLRAGSLPAPLTVIEERTVGPNLG 358

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +D+I  G    + G +L+ +F+  LYG WG++AD ++ L+ ILT A LSLLGATLTLP I
Sbjct: 359 ADAIKMGLYTGIIGFILVAIFIFFLYGIWGIIADIALALHTILTFAALSLLGATLTLPGI 418

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE+RK  S F +LD GF +A++TI D+N+TA+IAT++L
Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGLSAFAALDRGFKQAFTTIIDANVTAVIATILL 478

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F FG G VRGFA+TM L ++ISMFT I++VR +MI+IIR  K+K + I     F  IP  
Sbjct: 479 FLFGTGPVRGFAVTMLLGVVISMFTDITLVRMIMIWIIRKWKIKILHI--QPFFNFIPQN 536

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+G+S + S+ SI L F  GLN+GIDF GG Q+ +  + P +L+++RS 
Sbjct: 537 TTFRFMNARFIGIGVSFILSLSSIFLFFKPGLNFGIDFIGGSQMSITTSTPANLAILRSQ 596

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L IG+++ QN D E   L+R+  Q GD + QT  ++ VK  + +I P +     E+V
Sbjct: 597 LSTLNIGEVTLQNIDNENAVLIRIPKQNGDEIQQTIAIDKVKTTVKDIYPDAAFDQIEVV 656

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+S EL   GI  VI++AIAM +YIW RF+W+FA GAI TLILD TK +GFFAL   +
Sbjct: 657 GPKVSGELAIAGITAVILAAIAMSLYIWWRFEWFFAAGAIITLILDTTKMVGFFALCQFD 716

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY T    R++ID SIN+ L R ++TS 
Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLYRTK-PLREIIDLSINQVLVRCIFTSA 775

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +++LPMA+WGGS + +FAIPM  G+++A SSSIFIA PILL + +W   + +
Sbjct: 776 TTVLAMLPMAIWGGSTVQNFAIPMVAGVLIATSSSIFIATPILLLLGNWWHNHNK 830



 Score =  102 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G+   II  I + I+I+  +   + + A   L L    T    +L G  
Sbjct: 354 GPNLGADAIKMGLYTGIIGFILVAIFIFFLYGI-WGIIADIALALHTILTFAALSLLGAT 412

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +S    +D+   +     +  ++
Sbjct: 413 LTLPGIAGIILGIGIAVDANILINERIREESR---KGLSAFAALDRGFKQAFTTIIDANV 469

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            A I+ + + ++G   +  FA+ M  G+V     S+F    ++  I  W  +  +I
Sbjct: 470 TAVIATILLFLFGTGPVRGFAVTMLLGVV----ISMFTDITLVRMIMIWIIRKWKI 521


>gi|49475818|ref|YP_033859.1| bifunctional preprotein translocase subunit SecD/SecF [Bartonella
           henselae str. Houston-1]
 gi|49238626|emb|CAF27870.1| Protein-export membrane protein [Bartonella henselae str.
           Houston-1]
          Length = 837

 Score =  433 bits (1112), Expect = e-119,   Method: Composition-based stats.
 Identities = 392/834 (47%), Positives = 555/834 (66%), Gaps = 8/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   WL+ LY  I    + +ALPN   Q  +      +   R++LGLDL+GGS L+LEV
Sbjct: 1   MRTPGWLITLYCFILLSSIYVALPNLFSQEQVKNS-KFLTDTRVTLGLDLQGGSSLLLEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L M    +R+ L+++ I   S+R +++ +    +D    E     +   + 
Sbjct: 60  DTKTLKRDQLHMVLGNVRNILREKQIRTSSVRVLEDSVIALISDPTESEKAVSALKTLIT 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            ++S          +    +  I ++L++  I + IS+AIEQS+EIIR+RIDQ+G++E  
Sbjct: 120 PIHSSFGTTADDITISAQDK-TIRVMLTEAGIKERISNAIEQSLEIIRRRIDQVGVTEPA 178

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238
           IQ++G+ RI++QLPG QDP +LR LLGTTAKM+FH V  N        GV  L     + 
Sbjct: 179 IQKVGTDRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPSNVDINNLPTGVSILPGYTDET 238

Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +Y + D++ + G  L  A A F      + ++  + +  G++ F ++TR NI +P A+V
Sbjct: 239 QRYAIYDQIALDGNVLKDARAGFDPQMPGRSIISFTMNSTGSKIFADITRQNINRPFAIV 298

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +VLTAP IN  IP+G+ QI+GNF  + A  LAA+LRAGSLP  L ++EER VG +LG
Sbjct: 299 LDNKVLTAPTINSVIPNGQGQITGNFDPKEASTLAALLRAGSLPAPLTVIEERTVGPNLG 358

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +D+I  G    + G V + +F+ +LYG WG++A+ ++ L+ ILT A LSLLGATLTLP I
Sbjct: 359 ADAIQMGLYTGIIGFVFVTVFIFLLYGVWGIIANIALALHTILTFAALSLLGATLTLPGI 418

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE+RK  S F +LD GF +A++TI D+N+TA+IAT++L
Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGISAFAALDRGFKQAFATIIDANVTAIIATILL 478

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++R  K+K++  +  S F +IP  
Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTNITIVRIMMIWVVRKWKIKAL--HLHSVFNIIPRN 536

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               FM+ARF G+G+SI+ S+ SI L F  GLN+GIDF GG Q+ +    P +L+ +RS 
Sbjct: 537 TTFHFMKARFIGIGVSIVLSLASIFLFFKPGLNFGIDFIGGSQMSITTKAPANLTTLRSQ 596

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L IG+++ QN D     L+R+Q Q G  + QT  ++ VK  +  I P +T    E+V
Sbjct: 597 LSTLNIGEVTLQNMDNANTVLIRIQKQSGGEIQQTTAIDKVKTTVHNIYPNATFDQIEVV 656

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPKIS EL       VI++AIAM +YIW+RF+W+FA+GAI TLILD TK +GFFALF  +
Sbjct: 657 GPKISGELATAAFTAVILAAIAMSLYIWLRFEWFFAVGAIVTLILDTTKMIGFFALFQFD 716

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY   +S R+LID SIN+ L R ++TS 
Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KKMSLRELIDLSINQVLIRCLFTSA 775

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +++LPMA+WGGS + +FA PM FGI++A SSSIFIAAPILL + +W  K  
Sbjct: 776 TTVLAMLPMALWGGSAVYNFAFPMVFGIIIATSSSIFIAAPILLLLGNWWRKRN 829


>gi|319898748|ref|YP_004158841.1| protein-export membrane protein [Bartonella clarridgeiae 73]
 gi|319402712|emb|CBI76259.1| protein-export membrane protein [Bartonella clarridgeiae 73]
          Length = 834

 Score =  427 bits (1098), Expect = e-117,   Method: Composition-based stats.
 Identities = 393/835 (47%), Positives = 552/835 (66%), Gaps = 8/835 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   WL  LY  I    + +ALPN   Q  +      +P   ++LGLDL+GGS L+LE+
Sbjct: 1   MRIPRWLATLYCFILLSSIYVALPNLFSQEQIKNS-KLLPNTHVTLGLDLQGGSSLLLEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   + +R+ L++  I   S+R I + I +  +D++  +     +   + 
Sbjct: 60  DTKTLKRDHLRTVLNNVRTKLREAKIHTSSIRIIDDSIAVVVSDTKQNKKAVTTLETLII 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +N+          +    E  I + L+   I+  +S A+EQS+EIIR+RIDQ+G++E  
Sbjct: 120 PINNSFGTTASDIAVSNQNE-TIRVTLTDAGINDRVSKAVEQSLEIIRRRIDQVGVTEPA 178

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQ++G++RI++QLPG QDP +LR LLGTTAKM+FH V  N        GV  L       
Sbjct: 179 IQKVGTNRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPHNVDINNPPIGVSILPGYTDAN 238

Query: 241 --YLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Y + D++ + G  L  A A F      + ++  + + +G++ F E+TR +I +P A+V
Sbjct: 239 QHYAIYDQIALDGNVLKDARAGFDPQIPGRSIISFTMNSIGSKIFAEITRQHINRPFAIV 298

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +VLTAPVIN  IP+G+ QI+GNF  + A  LAA+LRAG+LP  L ++EER VG +LG
Sbjct: 299 LDNKVLTAPVINSVIPNGQGQITGNFDPKEASTLAALLRAGALPTPLTVIEERTVGPNLG 358

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +DSI  G    + G +L+ +F+ +LYG WG++AD +I L+ IL  + LSLLGATLTLP I
Sbjct: 359 ADSIKMGLYTGIIGFILVTVFIFLLYGIWGIIADIAIALHTILIFSALSLLGATLTLPGI 418

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE++KN S F +LD GF +A+STI D+N+TA+IATV+L
Sbjct: 419 AGIILGIGIAVDANILINERIREESQKNISAFAALDRGFKQAFSTILDANVTAVIATVLL 478

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++   K+K +     S F  IP  
Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTEITIVRIMMIWVVNKWKIKKL--KLQSFFNFIPKN 536

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+GISIL S+ SI L F  GLN+GIDF GG Q+ +    P +L+ +RSN
Sbjct: 537 TTFRFMNARFIGIGISILLSLFSIFLFFKPGLNFGIDFVGGSQISIRTKTPANLATLRSN 596

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L IG+++ QN D E   L+R+Q Q G  +  T  ++ VKK +  I P +T   TE+V
Sbjct: 597 LSALNIGEVTLQNIDNENTVLIRIQQQSGGEMQHTIAIDKVKKTVQSIYPDTTFDQTEVV 656

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPKIS EL   G   VI++ IAM +YIW RF+W+FA+GAI TLILD TK +GFFALF  +
Sbjct: 657 GPKISSELATAGFTAVILATIAMSLYIWWRFEWFFAIGAIITLILDTTKMVGFFALFQFD 716

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY  +   R++ID SIN+   R ++TS 
Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLYKKT-PLREIIDLSINQVFIRCIFTSA 775

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +++LPMA+WGGS + +FA P+ FGI++A SSSIFIAAPILL + +W  K  +
Sbjct: 776 TTILAMLPMALWGGSAVNNFAWPIVFGIIIATSSSIFIAAPILLLLNNWWYKKNK 830


>gi|116251815|ref|YP_767653.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256463|emb|CAK07547.1| putative transmembrane export SecD/F family protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 846

 Score =  426 bits (1093), Expect = e-116,   Method: Composition-based stats.
 Identities = 305/834 (36%), Positives = 472/834 (56%), Gaps = 19/834 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W  +L  +     ++IA PN L ++     P  +  +R+ LGLDL+GGSH+VL+V
Sbjct: 2   LHFSRWKTLLIWLAAFAAIVIAAPNLLTEAQRSSLPDWLRHDRVVLGLDLQGGSHIVLKV 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  D V   L+     +R+ L+  GI    +      +T+   D+   +   D +     
Sbjct: 62  ERSDIVRDRLEEVVANVRNALRGAGIRYTGLTGNDQTVTVRITDAAQTQAAVDLLKPLTT 121

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      +       + ++S+ +S   I   ++ A  +S++I+ +RI  +G     
Sbjct: 122 AGGHSGPEVALQQG----DQGQLSLQISDAGITAAVASARTRSLDIVGRRIAGLGNDNFL 177

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234
           ++  G+ RI++Q+ G  D  RL+ +L   AK+SFH +  + S +  + G           
Sbjct: 178 VRPDGADRIVVQVLGSVDAERLKNILNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYS 237

Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            D     YLV+    I+G ++       DP+T    +    D  G +R  + T  NIGK 
Sbjct: 238 LDDPPVPYLVDRTAFITGGNMVDIEPVVDPQTQDTSIAYDLDAEGTQRLAQATGQNIGKH 297

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+V DG+V+++P I+ AI  G+ QIS NF+ +    LA MLRAG+LP  L  VEER+V 
Sbjct: 298 LAIVFDGQVMSSPAIDAAITGGEGQISANFSEDGVRDLAIMLRAGALPATLTSVEERSVS 357

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
              G+DSI+ G  A +  +VL+   MI LY   GL+A  S+FLN+IL +A+LSL GATLT
Sbjct: 358 PRFGADSIFNGLVAGLVAVVLVAALMIALYRILGLIAVASLFLNLILIVAVLSLAGATLT 417

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL +G+AVDSN+L+ ERIREE +   S   ++  GFSRA++TI D+N+T  IA
Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTTHSFAEAVGRGFSRAFATIVDANVTIFIA 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            ++LFF G  ++RGFA+T+ + IL ++FTA ++ R+++   +R +  + +  + L+    
Sbjct: 478 AIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWVRKRHPRHLPKSVLTH--- 534

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592
           + +   I+FM  R +    S + S+ ++    T GL+ GIDF GG  + V A +   D++
Sbjct: 535 LFEHANIRFMGIRRYVFTASAVISLIAMAAFATVGLHLGIDFTGGSLIEVTAKQGNADIA 594

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            + + L  L +G+IS +   G  N  +R+  Q G   A+     +V+ ++ E       +
Sbjct: 595 DLNARLNDLNLGEISVERTGGPANARIRIASQGGGENAEQSAATLVRGELQE---DYDFR 651

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E+VGP IS EL     +GV+ +  A+LIYIWIRF+W FA+GAI   + D+   LG F 
Sbjct: 652 RVEVVGPAISGELTMMATLGVLAALAAILIYIWIRFEWQFAVGAIVATLHDVIIMLGLFV 711

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L GIEFNLT+VAAVLT++GYS+ND VVVYDRMR+N+K Y   +    LID SIN+TL R+
Sbjct: 712 LTGIEFNLTSVAAVLTIVGYSLNDTVVVYDRMRENLKRY-KKMPLPILIDASINQTLSRT 770

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           V T+    I++L + ++GG VI SF   M FG+ +   SSI+IAAP+L+     
Sbjct: 771 VLTAATTLIALLALFLFGGEVIRSFTFAMLFGVALGTFSSIYIAAPVLIVFRLR 824



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 67/147 (45%), Gaps = 4/147 (2%)

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +   ++    L A+ +L L++   +   +L G    L  +A ++ ++G +V+  V++Y+R
Sbjct: 383 MIALYRI-LGLIAVASLFLNLILIVAVLSLAGATLTLPGIAGIVLIVGMAVDSNVLIYER 441

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           +R+      T+ SF + + +  +      V  ++  FI+ + +   G   I  FA+ +A 
Sbjct: 442 IREE---EKTTHSFAEAVGRGFSRAFATIVDANVTIFIAAIILFFLGSESIRGFAVTLAV 498

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKN 830
           GI+    ++  +   I+      R   
Sbjct: 499 GILTTVFTAFTLTRSIVAVWVRKRHPR 525


>gi|319404073|emb|CBI77661.1| protein-export membrane protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 836

 Score =  424 bits (1089), Expect = e-116,   Method: Composition-based stats.
 Identities = 389/835 (46%), Positives = 553/835 (66%), Gaps = 8/835 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   WL  LY  I    + +ALPN   Q  +      +P   ++LGLDL+GGS L+LEV
Sbjct: 1   MRTPAWLATLYCFILLSSIYVALPNLFSQEQIKNS-KFLPNTHVTLGLDLQGGSSLLLEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L      +R  L++  I   S+R I++ I +  +D+   +     +   + 
Sbjct: 60  DTKTLKRDQLHTVLSNVRKKLREAKIQTSSVRIIEDNIVVVLSDTTQNKKAITTLETLIM 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +++          +    E  I + L+++ I+  +S AIEQS+EIIR+RIDQ+G++E  
Sbjct: 120 PIHNSFGTTASDIAINNQNE-TIRVTLTESGINDRVSKAIEQSLEIIRRRIDQVGVTEPA 178

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238
           IQ++G++RI++QLPG QDP +LR LLGTTAKM+FH V  N        GV  L       
Sbjct: 179 IQKVGTNRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPSNIDINNPPVGVSILSGYTDVN 238

Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +Y + D++ + G  L  A A F      + ++  + + +G++ F ++TR +I +P A+V
Sbjct: 239 QKYAIYDQIALDGNVLKDARAGFDPQIPGRSIISFTMNSIGSKIFADITRQHINRPFAIV 298

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +VLTAPVIN  IP+G+ QI+GNF  + A  LAA+LRAG+LP  L ++EER VG +LG
Sbjct: 299 LDNKVLTAPVINSVIPNGQGQITGNFDSKEASTLAALLRAGALPAPLTVIEERTVGPNLG 358

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +DSI  G    + G +L+ +F+ +LYG WG++AD +I L+ IL  + LSLLGATLTLP I
Sbjct: 359 ADSIKMGLYTGIIGFILVTVFIFLLYGIWGIIADIAIALHTILIFSALSLLGATLTLPGI 418

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE++K  S F +LD GF +A++TI D+N+TA+IATV+L
Sbjct: 419 AGIILGIGIAVDANILINERIREESQKGISAFAALDRGFKQAFATILDANVTAVIATVLL 478

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++   K+K +     S F  IP  
Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTEITIVRIMMIWVVNKWKIKKLQF--QSVFNFIPKN 536

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+GISI+ S+ SI L F  GLN+GIDF GG Q+ +    P +L+++RSN
Sbjct: 537 TTFRFMNARFIGIGISIILSLSSIFLFFKPGLNFGIDFVGGSQMTITTKTPANLAILRSN 596

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L IG+++ QN D E   L+R+Q Q G  +  T  ++ VKK +  I P +T   TE+V
Sbjct: 597 LSALNIGEVTLQNIDNENTILIRIQQQSGGEIQHTIAIDKVKKTVQSIYPDTTFDQTEVV 656

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPKIS EL   GI+ VI++ +AM +YIW RF+W+FA+GAI TLILDITK +GFF LF  +
Sbjct: 657 GPKISGELATAGIIAVILATVAMSLYIWWRFEWFFAIGAIVTLILDITKMVGFFVLFQFD 716

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY      R++ID SIN+   R ++TS 
Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KQTPLREIIDLSINQVFVRCIFTST 775

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +++LPMA+WGG+ + +FA P+ FGI++A SSSIFIAAPILL + +W  K  +
Sbjct: 776 TTILAMLPMALWGGNTVNNFAWPIVFGIIIATSSSIFIAAPILLLLNNWCYKKNK 830


>gi|319407084|emb|CBI80721.1| protein-export membrane protein [Bartonella sp. 1-1C]
          Length = 841

 Score =  420 bits (1079), Expect = e-115,   Method: Composition-based stats.
 Identities = 387/829 (46%), Positives = 549/829 (66%), Gaps = 8/829 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   WL  LY  I    + +ALPN   Q  +      +P   ++LGLDL+GGS L+LEV
Sbjct: 1   MRTPAWLATLYCFILLSSIYVALPNLFSQEQIKNS-KFLPNTHVTLGLDLQGGSSLLLEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D     +  L      +R  L++  I   S+R I++ I +  +D+   +     +   + 
Sbjct: 60  DTKTLKHDQLHTVLSNVRKKLREAKIHTSSVRIIEDNIVVVLSDTTQNKKAITTLETLIM 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +++          +    E  I + L+++ I+  +S AIEQS+EIIR+RIDQ+G++E  
Sbjct: 120 PIHNSFGTTASDIAINNQNE-TIRVTLTESGINDRVSKAIEQSLEIIRRRIDQVGVTEPA 178

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238
           IQ++G++RI+IQLPG QDP +LR LLGTTAKM+FH V  N        GV  L       
Sbjct: 179 IQKVGTNRIMIQLPGLQDPKQLRDLLGTTAKMTFHLVPSNIDINNPPVGVSILSGYTDVN 238

Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +Y + D++ + G  L  A + F      + ++  + + +G++ F ++TR ++ +P A+V
Sbjct: 239 QKYAIYDQIALDGNVLKDARSGFDPQIPGRSIISFTMNSIGSKIFADITRQHLNRPFAIV 298

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +VLTAPVIN  IP+G+ QI+GNF  + A  LAA+LRAG+LP  L ++EER VG +LG
Sbjct: 299 LDNKVLTAPVINSVIPNGQGQITGNFDSKEASTLAALLRAGALPAPLTVIEERTVGPNLG 358

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +DSI  G    + G +L+ +F+ +LYG WG++AD +I L+ IL  + LSLLGATLTLP I
Sbjct: 359 ADSIKMGLYTGIIGFILVTVFIFLLYGIWGIIADIAIALHTILIFSALSLLGATLTLPGI 418

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE++K  S F +LD GF +A++TI D+N+TA+IATV+L
Sbjct: 419 AGIILGIGIAVDANILINERIREESQKGISAFAALDRGFKQAFATILDANVTAVIATVLL 478

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++   K+K +     S F  IP  
Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTEITIVRIMMIWVVNKWKIKKLQF--QSFFNFIPKN 536

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               FM ARF G+GISI+ S+ SI L F  GLN+GIDF GG Q+ +    P +L+++RSN
Sbjct: 537 TTFPFMNARFIGIGISIILSLSSIFLFFKPGLNFGIDFVGGSQMTITTKTPANLAILRSN 596

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L IG+++ QN D E   L+R Q Q G  V     ++ VKK +  I P +T   TE+V
Sbjct: 597 LSALNIGEVTLQNIDNENTILLRTQQQSGGEVQHAIAIDKVKKTVQSIYPDTTFDQTEVV 656

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPKIS EL   GI+ VI++ +AM +YIW RF+W+FA+GAI TLILDITK +GFF LF  +
Sbjct: 657 GPKISGELATAGIIAVILATVAMSLYIWWRFEWFFAIGAIVTLILDITKMVGFFVLFQFD 716

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY      R++ID SIN+   R ++TS 
Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KQKPLREIIDLSINQVFVRCIFTST 775

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +++LPMA+WGG+ + +FA P+ FGI++A SSSIFIAAPILL + +W
Sbjct: 776 TTILAMLPMALWGGNTVNNFAWPIVFGIIIATSSSIFIAAPILLLLNNW 824


>gi|49474423|ref|YP_032465.1| bifunctional preprotein translocase subunit SecD/SecF [Bartonella
           quintana str. Toulouse]
 gi|49239927|emb|CAF26328.1| Protein-export membrane protein [Bartonella quintana str. Toulouse]
          Length = 837

 Score =  419 bits (1076), Expect = e-115,   Method: Composition-based stats.
 Identities = 386/834 (46%), Positives = 554/834 (66%), Gaps = 8/834 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   WL  LY  I    + IALPN   Q  +      +   R++LGLDL+GGS L+LEV
Sbjct: 1   MRTPGWLTTLYCFILLSSIYIALPNLFSQEQVKNS-RFLTDTRVTLGLDLQGGSSLLLEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        L M    +R+ L+++ I   S+R +++ +    +D +  E     +   + 
Sbjct: 60  EAKTLKRDQLHMLLSNVRNTLREKQIRTSSIRVLEDSVIALISDPKESEKALSALKTLIT 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +++          +    +  + I+L++  + + IS+AIEQS+EIIR+RIDQ+G++E  
Sbjct: 120 PIHNSFGSKANDITIS-AQDNTLRIMLTEAGMKERISNAIEQSLEIIRRRIDQVGVTEPA 178

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238
           IQ++G+ RI++QLPG QDP +LR LLGTTAKM+FH V  N        GV  L       
Sbjct: 179 IQKVGTDRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPSNVDINNLPAGVSILPGYTDKA 238

Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +Y + D++ + G  L  A A F      + ++  + + +G++ F ++TR NI +P A+V
Sbjct: 239 QRYAIYDQIALDGNVLKDARAGFDPQMPGRSIISFTMNSIGSKIFADITRQNINRPFAIV 298

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +VLTAP+IN  IP+G+ QI+GNF  + A  LAA+LRAGSLP  L ++EER VG +LG
Sbjct: 299 LDNKVLTAPIINSVIPNGQGQITGNFDPKEASTLAALLRAGSLPAPLTVIEERTVGPNLG 358

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +D+I  G    + G VL+ +F+ +LYG WG++A+ ++ L+ ILT A LSLLGATLTLP I
Sbjct: 359 ADAIQMGLYTGIIGFVLVTVFIFLLYGIWGIIANIALALHTILTFAALSLLGATLTLPGI 418

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE+RK  S F +LD GF +A++TI D+NITA+IAT++L
Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGISAFAALDRGFKQAFATIVDANITAIIATILL 478

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++R  K+K++     S F + P  
Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTNITIVRIMMIWVVRKWKIKTLHF--HSIFNITPQN 536

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM+ARF G+ +SI+ S+ S+ L    GLN+GIDF GG Q+ +    P +L+ +RS 
Sbjct: 537 TTFRFMKARFIGISVSIVLSLVSVFLFLKPGLNFGIDFIGGSQMSITTKAPANLATLRSK 596

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L IG+++ QN D     L+R+Q Q G +  QT  ++ VK  +  I P +T    E+V
Sbjct: 597 LSTLNIGEVTLQNIDNANTVLIRIQKQSGGATQQTAAIDKVKTAVQNIYPNTTFDQIEVV 656

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPKIS EL       VI++AIAM +YIW+RF+W+FA+GAI TLILD TK +GFFA F  +
Sbjct: 657 GPKISGELATAAFTAVILAAIAMSLYIWLRFEWFFAVGAIVTLILDTTKMIGFFAFFQFD 716

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY  ++  R+LID SIN+ L R ++TS 
Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KNMPLRELIDFSINQVLIRCLFTSA 775

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +++LPMA+WGGS + +FA+PM FGI++A SSSIFIAAPILL + +W  K  
Sbjct: 776 TTVLAMLPMAIWGGSAVHNFAVPMVFGIIIATSSSIFIAAPILLLLGNWWRKRN 829


>gi|319408789|emb|CBI82446.1| protein-export membrane protein [Bartonella schoenbuchensis R1]
          Length = 833

 Score =  419 bits (1075), Expect = e-114,   Method: Composition-based stats.
 Identities = 393/835 (47%), Positives = 554/835 (66%), Gaps = 8/835 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   WL+ LY +I   G+ +ALPN   Q  + +    +P   ++LGLDL+GGS L+LEV
Sbjct: 1   MRTPGWLITLYCLILLSGIYVALPNLFSQEQI-KTSKFLPNTHVTLGLDLQGGSSLLLEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+   D +R+ L+++ I   ++R I++ I +  +D    +     +   + 
Sbjct: 60  DVKTLKRDQLRTILDNVRTKLREQKIRTSNIRIIEDDIIIVISDPTQNQKAVTALETLIM 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + +          + T  E  I + L+++ I   I + +EQS+EIIR+RIDQIG++E  
Sbjct: 120 PIQNSFGTTTNDITISTQNEN-IRVTLTESGIKDRIKNTVEQSLEIIRRRIDQIGVAEPA 178

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238
           IQ++G++RI++QLPG QDP +LR LLGTTAKM+FH V  N        GV  L     + 
Sbjct: 179 IQKVGTNRIMVQLPGLQDPKQLRDLLGTTAKMTFHLVPSNVDVNTPPIGVSILPGYTDEN 238

Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             + + D++ + G  L  A A F      + ++  + + +G++ F E+TR NI +P A+V
Sbjct: 239 QHFAIYDQIALDGNVLKDARAGFDPQMPGRAIISFTMNSIGSKIFAEITRKNINRPFAIV 298

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +VLTAPVIN  IP+G+ QI+GNF I+ A  LAA+LRAGSLP  L ++EER VG DLG
Sbjct: 299 LDNKVLTAPVINGIIPNGQGQITGNFDIKEASTLAALLRAGSLPAPLIVIEERTVGPDLG 358

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +D+I  G    + G VL+ +FM +LYG WG++ D ++ L+ ILTLA LSLLGATLTLP I
Sbjct: 359 ADAIKMGLYTGIIGFVLVAIFMFLLYGIWGIITDIALALHTILTLAALSLLGATLTLPGI 418

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE+RK  S F +LD GF +A++TI D+N+TA+IAT++L
Sbjct: 419 AGIILGIGIAVDANILINERIREESRKGVSAFAALDRGFKQAFATIVDANVTAIIATILL 478

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F+FG G VRGFAITM L I+ISMFT I+IVR +M++++R  K+K++ I P   F L    
Sbjct: 479 FWFGNGPVRGFAITMLLGIIISMFTDITIVRIIMVWVVRKWKIKTLRIQPFFDFTL--YN 536

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               FM+ARF G+GISI+ S+ SI L F  GLN+GIDF GG Q+ +    P +L+ +RS 
Sbjct: 537 TTFHFMKARFIGIGISIILSLASIFLFFKPGLNFGIDFIGGSQMSITTKAPANLATLRST 596

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L IG++  QN D     L+R+Q Q GD + QT  ++ VK  I  I P +     EIV
Sbjct: 597 LSALNIGEVKLQNIDNAHTVLIRIQKQNGDEIQQTVAMDKVKAAIQNIYPDTIFDQIEIV 656

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPKIS E +   ++ VI++AIAM +YIW RF+W+FA+GAI TLILDI K +G FALF  +
Sbjct: 657 GPKISEEFVTASVIAVILAAIAMSLYIWWRFEWFFAVGAIVTLILDIAKMIGLFALFQFD 716

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT++GYS+NDKVVVY+RMR+NM+LY   +    LID SIN+   R V+TS 
Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYNRMRENMRLY-KKMPMYQLIDLSINQVFTRCVFTST 775

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +++LPMA+WGGS + +FA+PM FGI++A  SSIFIAAPILL + +W     +
Sbjct: 776 TTILAMLPMALWGGSAVYNFALPMVFGIIIATLSSIFIAAPILLLLSNWGISKIK 830



 Score = 95.9 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 8/176 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G+   II  + + I++++ +   + +     L L    TL   +L G  
Sbjct: 354 GPDLGADAIKMGLYTGIIGFVLVAIFMFLLYGI-WGIITDIALALHTILTLAALSLLGAT 412

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  +++ +R+R+  +     +S    +D+   +     V  ++
Sbjct: 413 LTLPGIAGIILGIGIAVDANILINERIREESR---KGVSAFAALDRGFKQAFATIVDANV 469

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            A I+ + +  +G   +  FAI M  GI+     S+F    I+  I  W  +  +I
Sbjct: 470 TAIIATILLFWFGNGPVRGFAITMLLGII----ISMFTDITIVRIIMVWVVRKWKI 521


>gi|241204424|ref|YP_002975520.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858314|gb|ACS55981.1| protein-export membrane protein SecD [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 846

 Score =  418 bits (1073), Expect = e-114,   Method: Composition-based stats.
 Identities = 299/834 (35%), Positives = 469/834 (56%), Gaps = 19/834 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W  +L  +     ++IA PN L ++     P  +  +R+ LGLDL+GGSH+VL+V
Sbjct: 2   LHFSRWKTLLIWLAAFAAIVIAAPNLLTEAQRSSLPDWLRHDRVVLGLDLQGGSHIVLKV 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  D V   L+     +R+ L+   I    +      +T+   D    +   D +     
Sbjct: 62  ERSDIVRDRLEELVANVRNALRGASIRYTGLTGNDQTVTVRITDPAQTQAAVDLLK---- 117

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + +       +  L    E ++S+ +S   I   ++ A  +S++I+ +RI   G     
Sbjct: 118 PLTTAGGHSGSEVALQQGEEGQLSLQISDAGITADVASARTRSLDIVGRRIAGFGYDNFL 177

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234
           +   G+ RI++Q+ G  D  RL+ +L   AK+SFH +  + S +  + G           
Sbjct: 178 VHPDGADRIVVQVLGSVDAERLKNILNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYS 237

Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            D     YLV+     +  ++       DP+T +  +    D  G +R  + T  NIGK 
Sbjct: 238 LDDPPIPYLVDRTAFANSGNMVDIEPVIDPQTQETSIAYRLDAEGTQRLAQATGQNIGKH 297

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+V D +V+++PVI+ AI  G+ +IS NF+ +    LA MLRAG+LP  L  VEER+V 
Sbjct: 298 LAIVFDDQVMSSPVIDAAITGGEGRISANFSEDGVRDLAIMLRAGALPATLTSVEERSVS 357

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
              G+DSI+ G  A +  +VL+   MI LY   G++A  S+FLN+IL +A+LSL GATLT
Sbjct: 358 PRFGADSIFNGIVAGLVAVVLVAALMIALYRILGIIAVASLFLNLILIVAVLSLAGATLT 417

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL +G+AVDSN+L+ ERIREE +   S   ++  GFSRA++TI D+N+T  IA
Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTTHSFAEAVGRGFSRAFATIVDANVTIFIA 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            ++LFF G  ++RGFA+T+ + IL ++FTA ++ R+++   +  +  + +  + L+    
Sbjct: 478 AIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLSARHPRHLPKSVLTH--- 534

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592
           + +   I+FM  R +    S + S+ ++    T GL+ G+DF GG  + V A +   +++
Sbjct: 535 LFEHANIRFMGIRRYVFTASAVISLIAMAAFATVGLHLGVDFTGGSLIEVTAKQANAEIA 594

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            + S L  L +GD+S +   G  N  +R+  Q G   A+     +V+ ++ E       +
Sbjct: 595 DIHSRLNDLNLGDVSVERTGGPANARIRIASQGGGENAEQSAATLVRGELQE---DYDFR 651

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E+VGP IS EL     +GV+ +  A+LIYIWIRF+W FA+GAI   + D+   LG F 
Sbjct: 652 RVEVVGPAISGELTMMATLGVLAALAAILIYIWIRFEWQFAVGAIVATLHDVIIMLGLFV 711

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L GIEFNLT++AAVLT++GYS+ND VVVYDRMR+N+K Y   +    LID SIN+TL R+
Sbjct: 712 LTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRY-KKMPLPILIDASINQTLSRT 770

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           V T+    I++L + ++GG VI SF   M FG+ +   SSI+IAAP+L+     
Sbjct: 771 VLTAATTLIALLALFLFGGEVIRSFTFAMLFGVALGTFSSIYIAAPVLIVFRLR 824



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 80/175 (45%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V P+   + I  GIV  +++ + +   +   ++    + A+ +L L++   +   +L G
Sbjct: 355 SVSPRFGADSIFNGIVAGLVAVVLVAALMIALYRIL-GIIAVASLFLNLILIVAVLSLAG 413

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++ ++G +V+  V++Y+R+R+      T+ SF + + +  +      V  
Sbjct: 414 ATLTLPGIAGIVLIVGMAVDSNVLIYERIREE---EKTTHSFAEAVGRGFSRAFATIVDA 470

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   I  FA+ +A GI+    ++  +   I+      R   
Sbjct: 471 NVTIFIAAIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLSARHPR 525


>gi|319405517|emb|CBI79136.1| protein-export membrane protein [Bartonella sp. AR 15-3]
          Length = 841

 Score =  417 bits (1070), Expect = e-114,   Method: Composition-based stats.
 Identities = 386/829 (46%), Positives = 549/829 (66%), Gaps = 8/829 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   WL  +Y  I   G+ +ALPN   Q  +      +P   ++LGLDL+GGS L+LEV
Sbjct: 1   MRTPAWLATIYCFILLSGIYVALPNLFSQEQIKNS-KFLPNTHVTLGLDLQGGSSLLLEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        L+     +R+ L++  I   S+R I++ I +   D+   +     +   + 
Sbjct: 60  DTKTLKRDQLRTVLSNVRTKLREAKIHTSSIRIIEDSIVVVLYDTTQNKKTVTTLETLIT 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +++          +    E  I + L+++ I+  +S AIEQS+EIIR+RIDQ+G++E  
Sbjct: 120 PIHNSFGTTTSDIAINNQNE-TIRVTLTESGINDRVSKAIEQSLEIIRRRIDQVGVTEPA 178

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD--SDG 238
           IQ++G++RI++QLPG QDP +LR L+GTTAKM+FH V  N        GV  L       
Sbjct: 179 IQKVGTNRIMVQLPGLQDPKQLRDLIGTTAKMTFHLVASNVDINNPPIGVSILSGYTDAN 238

Query: 239 NQYLVEDKVEISGIHLNGATANF-DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +Y + D++ + G  L  A A F      + ++  + + +G++ F E+TR +I +P A+V
Sbjct: 239 QKYAIYDQIALDGNVLKDARAGFDPQIPGRSIISFTMNSIGSKIFAEITRQHINRPFAIV 298

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +VLTAPVIN  IP+G+ QI+GNF  + A  LAA+LRAG+LP  L ++EER VG +LG
Sbjct: 299 LDNKVLTAPVINSVIPNGQGQITGNFDSKEASTLAALLRAGALPAPLTVIEERTVGPNLG 358

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +DSI  G    + G +L+ +F+ +LYG WG++AD +I L+ IL  + LSLLGATLTLP I
Sbjct: 359 ADSIKMGLYTGIIGFILVTVFIFLLYGIWGIIADIAIALHAILIFSALSLLGATLTLPGI 418

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+LGIG+AVD+NIL+NERIREE++K+ S F +LD GF +A++TI D+N+TA+IATV+L
Sbjct: 419 AGIILGIGIAVDANILINERIREESQKDISAFAALDRGFKQAFATILDANVTAVIATVLL 478

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F+FG G VRGFA+TM L I+ISMFT I+IVR MMI+++   K+K +     S F  IP  
Sbjct: 479 FWFGTGPVRGFAVTMLLGIIISMFTEITIVRIMMIWVVNKWKIKKL--KLQSFFNFIPKN 536

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +FM ARF G+ ISI+ S+ SI L F  GLN+GIDF GG Q+ +    P +L+ +RS+
Sbjct: 537 TTFRFMNARFIGIAISIVLSLFSIFLFFKPGLNFGIDFVGGSQMTITTKTPANLATLRSH 596

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +L IG+++ QN D E   L+R+Q Q G  +  T  ++ VKK +  I P +    TEIV
Sbjct: 597 LSALNIGEVTLQNIDNENTILIRIQQQSGGEIQHTIAIDKVKKTLQSIYPDTIFDQTEIV 656

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPKIS EL   G+  VI++  AM +YIW RF+W+FA+GAI TLILDITK +GFF LF  +
Sbjct: 657 GPKISGELATAGVTAVILAIAAMSLYIWWRFEWFFAIGAIVTLILDITKMIGFFVLFQFD 716

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNLTA+AA+LT++GYS+NDKVVVYDRMR+NM+LY      R++ID SIN+   R ++TS 
Sbjct: 717 FNLTAIAALLTIVGYSINDKVVVYDRMRENMRLY-KQTPLREIIDLSINQVFIRCIFTSA 775

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +++LPMA+WGGS + +FA P+ FGI++A SSSIFIAAPILL + +W
Sbjct: 776 TTVLAMLPMALWGGSAVNNFAWPIVFGIIIATSSSIFIAAPILLLLNNW 824


>gi|162147519|ref|YP_001601980.1| bifunctional preprotein translocase subunit SecD/SecF
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|161786096|emb|CAP55678.1| putative protein-export membrane protein secD [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 836

 Score =  415 bits (1066), Expect = e-113,   Method: Composition-based stats.
 Identities = 315/841 (37%), Positives = 485/841 (57%), Gaps = 23/841 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M  +   +     +C +G+L+ LPN L Q         +P  +I LGLDLRGGS+L+++V
Sbjct: 2   MYYSRLKLASVVAVCLLGMLLCLPNALRQPAPA-----VPWRQIHLGLDLRGGSYLLMQV 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D +      LQ  +D  R  L   G+G   +       T++F      E+ AD     L+
Sbjct: 57  DMNSIRADRLQTLADGTRQALLGAGLGYRDIATDAQAGTVTFTPREPAESDAD-----LK 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + +       +  +    +  I+I LS   + Q  + A+ QS+EI+R+RID  G  +  
Sbjct: 112 TLRAMPKAVADEFSVDRRPDGSIAITLSPVAMRQRAAEAVTQSIEIVRRRIDATGAVDPE 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---FLRDSD 237
           I R G  RI+++LPG  DP  +++LLGTTAKM+FH V  N               + ++ 
Sbjct: 172 ITRQGEDRIIVELPGISDPEHVKKLLGTTAKMTFHMVQENALGSAVPGPGVTLLPMLNAP 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  V D V++ G  L  A A  D ++ +  V+ +FD  GAR F   T+ N+G+  A+V
Sbjct: 232 DQKLPVRDHVDVDGSDLTNAGAAIDQQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIV 291

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +V+ APVI  AI  G  QI+G F  ++A  LA +LRAG+LP  L+++E+R++G  LG
Sbjct: 292 LDNKVVQAPVIRTAITGGNGQITGGFDAQSATDLALLLRAGALPAPLSVIEQRSIGPSLG 351

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +DSI  G  ++  G  L+++FM + YG++G  A+ ++  N++L +A+LSL  ATLTLP +
Sbjct: 352 ADSIRAGMISLGVGFALVIVFMALFYGRFGWYANAALLANLVLMVAVLSLFQATLTLPGM 411

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG++L +G+AVD+NIL+NER+REE  + ++   ++  GF RA STI DSN TAL+A ++L
Sbjct: 412 AGMLLTLGMAVDANILINERVREEVGRGRTPLAAMQTGFERATSTILDSNATALLAHIML 471

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF-----F 532
           F FG G V+ FA+T+ + I  ++FT + + R +M+      +  ++ +     F      
Sbjct: 472 FVFGTGPVQNFALTIMIGIATTLFTTLLLSRMLMVRWYARTRPTALPVWRRIMFSRPLLR 531

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +P    I FMR RF G+  S + SI S+ L    GL  G+DF+GGI +      P D  
Sbjct: 532 FVPKGTRINFMRGRFVGLATSAVLSIASVILFLHPGLTLGLDFRGGIVVEARTQGPADFG 591

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT---EIVPLS 649
            +R+ L +  +     Q+F    + L+RL   P     +    + +   +      +P +
Sbjct: 592 KIRAALAAQHVEAAGVQSFGAPDDVLIRLDAPPAGDHDREAHTQAMVDSVRHAVATLPGA 651

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            +   + VG  +S EL R G++ + IS + +L YIW RF+W FA+ A+ TL+LD+TKT+G
Sbjct: 652 QVLRADAVGASVSAELFRNGMLALGISLLMILGYIWFRFEWEFAVSAVVTLVLDLTKTIG 711

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  L   EF+L  VAA+LT++GYS NDKVVVYDR+R+N++ Y T +   +LID SINETL
Sbjct: 712 FLVLTHFEFDLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRT-MPLAELIDLSINETL 770

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           GR++ TS   F++ LP+A++G   + SFA  M FGIVV  SSSIFIAAP+LL + + R +
Sbjct: 771 GRTLGTSSTVFLAALPLALFGA-SLSSFAWVMLFGIVVGTSSSIFIAAPLLLLLGEKRLR 829

Query: 830 N 830
            
Sbjct: 830 R 830



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 101/264 (38%), Gaps = 10/264 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS----- 628
              G   +    +     +   +   ++        +    +  ++R     G+      
Sbjct: 257 QQSGEWAVNFTFDSAGARAFAATTQANVGRRFAIVLDNKVVQAPVIRTAITGGNGQITGG 316

Query: 629 -VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             AQ+     +  +   +    ++     +GP +  + IR G++ + +    +++++ + 
Sbjct: 317 FDAQSATDLALLLRAGALPAPLSVIEQRSIGPSLGADSIRAGMISLGVGFALVIVFMALF 376

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +   F   A   L+ ++   +   +LF     L  +A +L  +G +V+  +++ +R+R+ 
Sbjct: 377 YG-RFGWYANAALLANLVLMVAVLSLFQATLTLPGMAGMLLTLGMAVDANILINERVREE 435

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +    +           + ++  A ++ + + V+G   + +FA+ +  GI  
Sbjct: 436 V---GRGRTPLAAMQTGFERATSTILDSNATALLAHIMLFVFGTGPVQNFALTIMIGIAT 492

Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831
              +++ ++  +++  Y      A
Sbjct: 493 TLFTTLLLSRMLMVRWYARTRPTA 516


>gi|209549097|ref|YP_002281014.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534853|gb|ACI54788.1| protein-export membrane protein SecD [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 846

 Score =  414 bits (1064), Expect = e-113,   Method: Composition-based stats.
 Identities = 299/834 (35%), Positives = 467/834 (55%), Gaps = 19/834 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W  +L  +     ++IA PN L ++     P  + ++R++LGLDL+GGSH+VL+V
Sbjct: 2   LHFSRWKTLLIWLAAFAAIIIAAPNLLSEAQRSSLPGWLRQDRVTLGLDLQGGSHIVLKV 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  D V   L+     +R+ L+  GI    +      +T+   D    +   + +     
Sbjct: 62  ERSDIVKDRLEEAVANVRNTLRGAGIRYTGLTGNDQTVTVRITDPAETQKAVELLKPLTT 121

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      +       E ++S+ +S   I   ++ A  +S++I+ +RI   G +   
Sbjct: 122 AGGRSGPEVALQQG----EEGQLSLQISDAGITADVASARTRSLDIVARRIAGFGHANFI 177

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234
           ++  G+ RI++Q+ G  D  RL+ LL   AK+SFH +  + S +  + G           
Sbjct: 178 VRPDGTDRIVVQVLGSVDAERLKNLLNQPAKLSFHLIDASMSGQEALNGRWPATSQVLYS 237

Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            D     YLV+    ++G ++ G     DP+T    +    D  G RR  EVT  NIGK 
Sbjct: 238 LDDPPVPYLVDRTAFLTGSNMVGIEPVVDPQTQDSSIAYRLDADGTRRLAEVTGQNIGKH 297

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+V D +V+++P I+ AI  G+  IS NF+ +    LA MLRAG+LP  L  VEER+V 
Sbjct: 298 LAIVFDDQVMSSPAIDAAITGGEGAISANFSEDGVRDLAIMLRAGALPATLTSVEERSVS 357

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
              G+DSI+ G  A +  +VL+   MI LY   G++A  S+  N+I  +A LSL GATLT
Sbjct: 358 PRFGADSIFSGLIAGLVAVVLVAALMIALYRILGVIAVVSLVFNLIFIVAALSLAGATLT 417

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL +G+AVDSN+L+ ERIREE +   S   +   GFSRA++TI D+N+T  IA
Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAAGRGFSRAFATIVDANVTIFIA 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            ++LFF G  ++RGFA+T+ + IL ++FTA ++ R+++   ++ +  + +  + L+    
Sbjct: 478 AIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLQRRHPRHLPKSVLTH--- 534

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592
           + +   I+FM  R +    S + S+ ++    T GL  GIDF GG  + V A +   DL+
Sbjct: 535 LFEHANIRFMGIRRYVFTASAIISLIAMAAFATAGLRLGIDFTGGSLIEVTAKQGNADLA 594

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            ++S L  L +G++S     G  N  +R+  Q G   A+     +V+ ++ E       +
Sbjct: 595 DLQSRLNDLNLGEVSVTRAGGPSNARIRIASQGGGENAEQSAATLVRGELQE---DYDFR 651

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E+VGP IS EL     +GV+ +  A+LIYIW+RF+W FA+GAI   + D+   LG F 
Sbjct: 652 RVEVVGPAISGELTMMATLGVLAALAAILIYIWVRFEWQFAVGAIVATLHDVIILLGLFV 711

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G+EFNLT+VAAVLT++GYS+ND VVVYDRMR+N+K Y   +    LID SIN+TL R+
Sbjct: 712 LTGMEFNLTSVAAVLTVVGYSLNDTVVVYDRMRENLKRY-KKMPLPILIDASINQTLSRT 770

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           + T+    +++L + ++GG VI SF   M FG+ +   SSI+IAAP+L+     
Sbjct: 771 ILTAATTLLALLALYLFGGEVIRSFTFTMLFGVALGTFSSIYIAAPVLIVFRLR 824



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 79/175 (45%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V P+   + I  G++  +++ + +   +   ++    + A+ +L+ ++   +   +L G
Sbjct: 355 SVSPRFGADSIFSGLIAGLVAVVLVAALMIALYRI-LGVIAVVSLVFNLIFIVAALSLAG 413

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++ ++G +V+  V++Y+R+R+      T+ SF +   +  +      V  
Sbjct: 414 ATLTLPGIAGIVLIVGMAVDSNVLIYERIREE---EKTAHSFAEAAGRGFSRAFATIVDA 470

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   I  FA+ +A GI+    ++  +   I+      R   
Sbjct: 471 NVTIFIAAIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLQRRHPR 525


>gi|332140267|ref|YP_004426005.1| Acriflavin resistance protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327550289|gb|AEA97007.1| Acriflavin resistance protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 858

 Score =  411 bits (1055), Expect = e-112,   Method: Composition-based stats.
 Identities = 309/853 (36%), Positives = 510/853 (59%), Gaps = 34/853 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M    +  ++Y +I  +GLL A PN LPQS+  + P+    + +SLGLDL+GGSHL+L  
Sbjct: 1   MARFSFRGVVYVLIVMLGLLSAAPNILPQSVKQQLPTWYTTSTLSLGLDLQGGSHLLLAA 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGV----------FSMRQIQNKITLSFADSRFKEN 110
           D +      L  +S ++ S L+ + +             S      ++  +   +     
Sbjct: 61  DTNALFAKQLNSFSSDVLSELRSQNVRYTRTPHSLSSKASSEDSAGRVVFTLRSADDARK 120

Query: 111 IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
           + D               +    L V   +  +++ L +   ++++   + +S+E++R+R
Sbjct: 121 VKDI------AYQISAQPNTASALDVAIKQNTVTLTLDELYTEELVKDTLNRSVEVVRKR 174

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
           +++ G++E ++   G   IL+Q+PG  DP+++++LLGTTA+M+FH    + S++     V
Sbjct: 175 LNETGLTEPSVTLQGKDAILVQMPGMSDPTQVKKLLGTTAQMTFHWAANSQSEQ-----V 229

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
              +D  GN Y +E KV + G H+  A      +T +PVV    D  GA++F  +TRDNI
Sbjct: 230 MNKQDVAGNTYQLEQKVALEGEHITDAAGVLSSETGQPVVTFRLDSAGAKQFATMTRDNI 289

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           G+ LA+VLD +V+TAPVIN  IP G+ +I+GNFT+  AG  A MLR G+LP+ L I+EER
Sbjct: 290 GRVLAIVLDDKVVTAPVINSVIPGGRGEITGNFTLPEAGNTALMLRTGALPVPLTIIEER 349

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG DLGSD+I  G  + VAG +L++ FM+ +YG+WG +A F++ +N++L    L+L GA
Sbjct: 350 TVGPDLGSDAIQTGVQSGVAGALLVLAFMVAIYGRWGAIASFALCINMVLVFGALTLFGA 409

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAG++L +G+AVD+NIL+NERIREE++K +    ++D+GF +A++TI DSN T 
Sbjct: 410 TLTLPGIAGLILTMGMAVDANILINERIREESKKGRPAARAIDVGFDKAFATIVDSNFTT 469

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           LIA  +LF FG G ++GFAIT+ L ++ S+FTA+++ + +M+ +++ K   + D      
Sbjct: 470 LIAVSLLFMFGSGPIKGFAITIALGLVSSVFTAVALTKVLMLKVVKSKHRNTRDRTQQRL 529

Query: 531 FFLIPDC--------IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           +                I F+  R   + IS++ ++ SI L    GL+YG+DF GG  + 
Sbjct: 530 YLRFSSPLLRLSDKLSGIDFLAKRKIALAISVVLTVLSIGLFAKPGLHYGVDFTGGTMIE 589

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD---SVAQTRVLEMVK 639
           + A   +    +R+ +ES     ++ Q +  E ++L+R      +     +  +  + +K
Sbjct: 590 LTAPA-LSTDELRNVIESNGFDQVAIQEYGNEHHYLLRAPVLDSNGELENSNAKQTDALK 648

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           + I++     +    ++VGPK+S       I+ ++I+   ML+Y+W RF+ +FA  A+ T
Sbjct: 649 RAISQADDTVSFDKIDMVGPKVSGGFAELSILALLIAGGGMLVYLWARFEAHFATAALLT 708

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           ++LD+TKT+GFFAL GIEFNLTAVAA+L LIGYS+NDKVVV DR+R+ ++L        +
Sbjct: 709 VLLDLTKTVGFFALTGIEFNLTAVAALLALIGYSINDKVVVLDRIRELLRLDPAK-PLAN 767

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            I++++N TL R+V+TS+   +++LPMA++GG  + SFA+PM F +VV  SS++FI + +
Sbjct: 768 TINEAVNSTLSRTVFTSVTTLLALLPMAIFGGDAVESFAVPMVFAVVVGTSSTLFITSTL 827

Query: 820 LLFIYDWRAKNAR 832
           L  +   R +  +
Sbjct: 828 LYLLGSRRERQGK 840


>gi|190891521|ref|YP_001978063.1| protein-export translocase [Rhizobium etli CIAT 652]
 gi|190696800|gb|ACE90885.1| protein-export translocase protein [Rhizobium etli CIAT 652]
          Length = 846

 Score =  410 bits (1053), Expect = e-112,   Method: Composition-based stats.
 Identities = 298/834 (35%), Positives = 461/834 (55%), Gaps = 19/834 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W  +L  ++    ++IA PN L ++     P  +  +R+ LGLDL+GGSH+VL+V
Sbjct: 2   LHFSRWKTLLIWLVAFAAVVIAAPNLLSEAQRASLPDWLRNDRVMLGLDLQGGSHIVLKV 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  D V   L+     +R+ L+  GI    +      +++   D    +   D++     
Sbjct: 62  ERSDIVKDRLEEAVANVRNALRGAGIRYTGLTGNDRTVSVRITDPAETQKAIDRLKSLTT 121

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      +       E ++S+ +S  +I   ++ A  +S++I+ +RI   G     
Sbjct: 122 TGRDSAPELTLQQG----GEGQLSLQISDADITADVASARTRSLDIVGRRIAGFGYENFL 177

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234
           ++  G  RI +Q+ G  D  RL+ LL   AK+SFH +  + S +  + G           
Sbjct: 178 VRPEGDDRITVQVLGSVDAERLKNLLNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYS 237

Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            D     YLV+     S  ++       D +T    +    D  G +R  EVT  NIGK 
Sbjct: 238 LDDPPVPYLVDRTAFASAGNMVDIQPVVDSQTQDTSIAYRLDAEGTKRLAEVTGQNIGKH 297

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+V D +V++AP I+ AI +G+ +IS NF+ +    LA MLRAG+LP  L  VEER+V 
Sbjct: 298 LAIVFDDQVMSAPAIDAAITNGEGRISANFSEDGVRDLAVMLRAGALPATLTSVEERSVS 357

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
              G +SI  G  A +  +VL+   MI LY   G++A  S+F N+IL +A LSL GATLT
Sbjct: 358 PTFGGESIVSGFVAGLVAVVLVAALMIALYRILGVIAVVSLFFNLILIIAALSLAGATLT 417

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL +G+AVDSN+L+ ERIREE +   S   +   GFSRA++TI D+N+T  IA
Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFAEAAGRGFSRAFATIVDANVTIFIA 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            V+LFF G  A+RGFA+T+ + IL ++FTA ++ R+++   +  +  + +  +  +    
Sbjct: 478 AVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRHPRHLPRSVFTH--- 534

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592
           + +   I+FM  R +    S   S+ ++    T GL  GIDF GG  + V A +   D++
Sbjct: 535 LFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLIEVTAKQGNADIA 594

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L  L +G++  +   G  N  +R+  Q G   A+     +V+ ++         +
Sbjct: 595 DLRSRLNDLNLGEVGVERTGGPANARIRIASQGGGENAEQSAATLVRGELEA---DYDFR 651

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E+VGP IS EL     +G++ +  A+L+YIWIRF+W FA+GAI   + D+   LG F 
Sbjct: 652 RVEVVGPAISGELTMMATLGIVAALAAILLYIWIRFEWQFAVGAIVATLHDVIIMLGLFV 711

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L GIEFNLT++AAVLT++GYS+ND VVVYDRMR+N+K YT  +    LID SIN+TL R+
Sbjct: 712 LTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRYTK-MPLPILIDASINQTLSRT 770

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           V T+    +++L + ++GG V+ SFA  M FG+ +   SSI+IAAP+L+     
Sbjct: 771 VLTAATTLLALLALYLFGGDVMRSFAFAMLFGVALGTFSSIYIAAPVLIVFRLR 824



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 76/175 (43%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V P    E I  G V  +++ + +   +   ++    + A+ +L  ++   +   +L G
Sbjct: 355 SVSPTFGGESIVSGFVAGLVAVVLVAALMIALYRI-LGVIAVVSLFFNLILIIAALSLAG 413

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++ ++G +V+  V++Y+R+R+      T+ SF +   +  +      V  
Sbjct: 414 ATLTLPGIAGIVLIVGMAVDSNVLIYERIREE---EKTAHSFAEAAGRGFSRAFATIVDA 470

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   I  FA+ +A GI+    ++  +   I+      R   
Sbjct: 471 NVTIFIAAVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRHPR 525


>gi|85706263|ref|ZP_01037358.1| Protein-export membrane protein secD [Roseovarius sp. 217]
 gi|85669427|gb|EAQ24293.1| Protein-export membrane protein secD [Roseovarius sp. 217]
          Length = 888

 Score =  409 bits (1049), Expect = e-111,   Method: Composition-based stats.
 Identities = 309/863 (35%), Positives = 486/863 (56%), Gaps = 41/863 (4%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ-----------------------SMLDRFPSAMPKN 42
           W  +L   +C  GL++ALPN                           + L  +PS +P  
Sbjct: 19  WKRLLIWSVCLWGLVVALPNAFYPQVERYNDAVALQAETGAVPSELAADLAGWPSWLPSG 78

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKIT 99
            +SLGLDLRGG+HL+ EV  +D     +     ++R  L+     V   R+ +    ++ 
Sbjct: 79  LVSLGLDLRGGAHLLAEVQVEDVYAARMDALWPQVRDALRDVRDEVGPFRREEAAAGELR 138

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           ++ +D    E     +      V S      + ++        +S+ LS+          
Sbjct: 139 IALSDPAGSEAALAAIWALATPVVSMTGAG-QADIEARAEGGVLSVTLSEAERAVTDERT 197

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV-- 217
           ++QS+EIIR+R+D++G  E TIQR G+ RILIQ+PG    S L+ L+GTTA+++FH V  
Sbjct: 198 VQQSLEIIRRRVDEVGTREPTIQRQGADRILIQVPGIGSASELKALIGTTARLTFHPVIG 257

Query: 218 --LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
                ++       +    D  G  Y V+    +SG +L  A   F  + ++P V   FD
Sbjct: 258 RAASADAVAEPGTLILPSLDDAGLVYRVDQTPVVSGDNLVDAKPMF-DRNNRPAVSFRFD 316

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
             GAR F + T  +IG+P A+VLD  V++APVI   I SG   I+G FT+E +  L+ +L
Sbjct: 317 PTGARAFGDYTASHIGQPFAIVLDNEVISAPVIQSHIASGSGIITGQFTVEDSTELSVLL 376

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           RAG+LP ++  +EER +G +LG DSI  G  A   G+V +++FM+  YG +G++A F++ 
Sbjct: 377 RAGALPAEMTFLEERTIGPELGQDSIDAGQRAAAIGMVAVIVFMVACYGSFGVMAVFALS 436

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           LN+ L +A L+++GATLTLP IAGIVL +G+AVD+ +L+ ERIREE R+ +    ++++G
Sbjct: 437 LNMALLIAALAVIGATLTLPGIAGIVLTMGMAVDATVLIFERIREELRQGRPAGRAIELG 496

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           F RA S I DSNIT L+  +++F  G GAVRGFA+T+GL ++ SMFTAI + R ++   +
Sbjct: 497 FQRALSAILDSNITGLLTALIMFAIGSGAVRGFAVTLGLGLVTSMFTAIYVTRLIIETWM 556

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
             +  K   I       L PD   I F RA++   G+S+   + S+ L+ T GLN+GIDF
Sbjct: 557 --RWRKPGSITLKGWIKLAPDRTTIDFFRAQWATFGVSVFAVVASLLLVATLGLNFGIDF 614

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSV 629
           KGG      A + ++L   R+ L SLQ+GD++                ++R+Q Q G   
Sbjct: 615 KGGTTFRTEAVQEINLEAYRAALSSLQLGDVAVSEVFDPGFRADQHVAMIRVQAQDGGEA 674

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                ++ V+  +  + P       E VGPK+S ELI   ++ V   A  +L+Y+W+RF+
Sbjct: 675 ISVETVQQVQAALRAVDPGIAFTAVESVGPKVSAELIWLALMAVGAGAFGILVYVWMRFE 734

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W FA+G +  L  D+  T+G FALF  +F+LT VAA+LT++GYSVND VV++DR+R+N+ 
Sbjct: 735 WQFAVGTVAALAHDVIVTIGVFALFQFKFDLTIVAALLTILGYSVNDTVVIFDRLRENLT 794

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
            +   +  R+L++ S NETL R++ T++   I+++ + V+GG VI  F   M FG+V+  
Sbjct: 795 KF-KVMPLRELMNLSANETLSRTLMTAVTTLIALIVLLVFGGDVIRGFVFAMVFGVVIGT 853

Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832
            S++++A  I+LF+   R+   +
Sbjct: 854 WSTLYVAKNIVLFLGLDRSDVPK 876


>gi|297568618|ref|YP_003689962.1| protein-export membrane protein SecD [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924533|gb|ADH85343.1| protein-export membrane protein SecD [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 870

 Score =  408 bits (1047), Expect = e-111,   Method: Composition-based stats.
 Identities = 260/870 (29%), Positives = 433/870 (49%), Gaps = 58/870 (6%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W + L   +    ++  LP+ L   +   +   +    + LGLDL+GG HLVL+VD D 
Sbjct: 6   KWKIGLLFFMIVFAVVTVLPS-LSVPVPGWWKKNLAPEGLRLGLDLQGGMHLVLKVDIDQ 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL-SFADSRFKENIADKVTLFLQGVN 123
            +   L + ++ELR+ ++ E I +   R     I + +  +        + V   +    
Sbjct: 65  AIANSLDLAAEELRATMRDERITLVRARHDDPHIAVFTLPNV----EALNTVERAVANDF 120

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L +  +       T   + + L    ++ +  +A+ QS+EIIR RIDQ G++E  I R
Sbjct: 121 PNLKIRVES---EEGTFPRVFLSLDDEQVEFIEQNAVRQSLEIIRNRIDQFGVAEPVIVR 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237
            G   I++QLPG +DP R   L+G TA++ F  V  +          + +          
Sbjct: 178 QGLDEIVVQLPGVRDPDRAIDLIGQTAQLEFKLVDDSGVVDLDRLINQAIEAGQWERGGD 237

Query: 238 --------------------------------GNQYLVEDKVEISGIHLNGATANFDPKT 265
                                               L+     ++G  +  A        
Sbjct: 238 RQQLNQALRGQLPEEREIYFHRRVDRETGQERQEPILLHVTSLMTGEMVRDARVRVGGTF 297

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           ++P V +     G R F ++T  N+G+ LA+VLD  V +APVI + I  G AQISG FT 
Sbjct: 298 NEPYVSLDLTARGGRLFGQITERNVGRQLAIVLDDVVRSAPVIRERILGGSAQISGGFTH 357

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
             A  LA +LR G+LP  ++I++   VGA LG DSI +G  A + G +L+  FM++ Y  
Sbjct: 358 GEASDLAIVLRVGALPAPVDIIQNLTVGASLGQDSIQRGIIAGLFGALLVATFMVIYYRL 417

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++A+ ++ LNV+     L+++ ATLTLP IAGI+L IG+AVD+N+L+ ER+REE    
Sbjct: 418 SGVIANAALLLNVLFIFTGLAMMQATLTLPGIAGIILAIGMAVDANVLIFERMREEFALG 477

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           ++V   ++ G+S+A+STI DS +T LI  + LF FG G ++GFA+T+ L +  ++ T + 
Sbjct: 478 KTVKSGVEGGYSKAFSTIIDSQVTTLITALALFLFGTGPIQGFAVTLSLGVTFNLITTLF 537

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS---ICSIC 562
             + +  F+   +K+K I          +     + FMR R +  GIS +       ++ 
Sbjct: 538 GTKIVYDFLHSKRKLKEIRF------LTLLTNPGLDFMRLRRYAFGISGIMLLVGAVAMV 591

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            ++    N G+DF GG      A +P DL+ VR  L    +     Q+ +GE   +VR++
Sbjct: 592 EVYRGTANLGVDFSGGTMAQYQAQQPFDLAEVRQALSDAGLEGAQPQHVEGENRLIVRIK 651

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                    T  +     +          ++   +G  IS  L  K +  ++I+ + +LI
Sbjct: 652 EDREVVGQITNTITAALDQYLGDKGFWL-ESQSEIGSAISETLRNKALQAILIALLGVLI 710

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           Y+ +RF+  F L A      D+   LG   LF IE  L  V A+LT+ GYS+ND VVV+D
Sbjct: 711 YLALRFQMRFGLAAAGATFHDVIVVLGICWLFNIEITLLIVTALLTIAGYSLNDSVVVFD 770

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+N+K        + LI++S+NE + R+V TS+   + ++ + ++GG V+  F++ + 
Sbjct: 771 RIRENIKK-RPGDDLKVLINRSVNEIISRTVITSLTTALVLVSLLIYGGVVLHDFSLVLL 829

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            GI+V   SSIF+A+P+L+ +   + + A+
Sbjct: 830 IGILVGTFSSIFVASPLLMMLPGSQHEMAK 859


>gi|222085794|ref|YP_002544324.1| protein-export translocase protein [Agrobacterium radiobacter K84]
 gi|221723242|gb|ACM26398.1| protein-export translocase protein [Agrobacterium radiobacter K84]
          Length = 848

 Score =  405 bits (1040), Expect = e-110,   Method: Composition-based stats.
 Identities = 281/832 (33%), Positives = 454/832 (54%), Gaps = 20/832 (2%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           W  +L      + +L A+PN L +  L  FP+   + ++ LGLDL+GGSH++L+++ DD 
Sbjct: 7   WKTVLIWFAVLLSVLFAVPNLLNEQRLASFPNWFAQRKVELGLDLKGGSHIMLKIERDDV 66

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   L+    ++ + L+   I    +     KI L   D    +     +          
Sbjct: 67  VRNRLETVVGDISARLRTVNIPYSGLTGTGQKIQLRINDPAQVQAAVIALKPITDAA--- 123

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                 +  L       +SI ++   I   +S A+ +S+++I  RI Q+ + E  I+R G
Sbjct: 124 --SGKPEATLSQGDNGALSIDITDAGIKDGLSAAVTRSLKVISNRIVQLDVGEPLIRRQG 181

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------RDSDG 238
           + RI+IQ+PG  DP RL+ LL   A++SF  V  +   +  M G            D   
Sbjct: 182 ADRIVIQVPGLGDPQRLKNLLNQPAELSFRLVDSSMPVQDAMNGRPPAGSEVLFSEDDPP 241

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             YL++ +  +S I    A A  + + +   V +        RF + T  N+GK +AVVL
Sbjct: 242 AGYLLQKQPLLSNIDFADAAAVSNTQNNDGNVTVKLTPEATGRFAQATAANLGKVIAVVL 301

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG+VL++  +  AI +G+  I G+FT + A  L+ ML++G LP  L  VEER +   LG+
Sbjct: 302 DGQVLSSASLKNAITTGEINIPGDFTAQGAQDLSVMLKSGPLPATLTTVEERTIEPGLGN 361

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           +++  G  A V   + +   MI  YG  G+ A  ++ +N+++ LAL+ + G TLTLP IA
Sbjct: 362 ETMRSGVMACVIAAIFVAALMIGFYGLLGVAATIALIINIVMVLALMGVFGITLTLPGIA 421

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IVL IG+A+D+N+L+ ER+REE +K   +  +L  GF+RA ST+ D+N T LI   +LF
Sbjct: 422 AIVLIIGMALDANVLIYERVREEEKKTHLLVDALRHGFNRAVSTVADANFTVLIIAAILF 481

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           +   GAVRGFA T+ + +  + FTA  + R+++   I ++K + +          I D  
Sbjct: 482 YVSSGAVRGFAATLIVGVFTTFFTACFVTRSLVSAWISHRKPRVLLAGV---RSGIFDGA 538

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DLSVVRSN 597
            I+FM  R +   +S   S+ ++      G++ GIDF GG  + V A + V D + +++ 
Sbjct: 539 NIRFMGIRRYTFTVSAALSVATLLAFAAVGMHLGIDFTGGSIIEVRAKQGVADTADIQAR 598

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+    GD+  +  D     ++R+  Q G   A+   L +V+ ++++          E+V
Sbjct: 599 LQETIPGDVQVERLDDRLGAVIRVHAQEGGENAEQSALTLVRDELSK---DYDFSRVEVV 655

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +S E+ +   + V+ +  A+LIYIW+RF+W FA+GAI   + D+  TLG F L G+E
Sbjct: 656 GPSVSGEITKTASLAVLAALAAILIYIWLRFEWQFAVGAIIATLHDVILTLGLFVLTGME 715

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FN+T +AA+LT++GYS+ND VVVYDRMR+N++ Y+  +    LID SIN+TL R+V TS 
Sbjct: 716 FNMTGIAALLTIVGYSLNDTVVVYDRMRENLRRYSQ-MPLPILIDASINQTLSRTVLTSA 774

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +++L + ++GG VI SF   + FG+ V   SSI+IAAP+L+       K
Sbjct: 775 TTLLALLALYIFGGEVIRSFTFVLLFGVAVGTFSSIYIAAPVLIVFKLRPDK 826



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 93/274 (33%), Gaps = 4/274 (1%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +     ++  N   +    +            +     + ++ +      +   +  
Sbjct: 255 IDFADAAAVSNTQNNDGNVTVKLTPEATGRFAQATAANLGKVIAVVLDGQVLSSASLKNA 314

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                   PGD  AQ      V  K   +    T      + P +  E +R G++  +I+
Sbjct: 315 ITTGEINIPGDFTAQGAQDLSVMLKSGPLPATLTTVEERTIEPGLGNETMRSGVMACVIA 374

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           AI +   +   +     + A   LI++I   L    +FGI   L  +AA++ +IG +++ 
Sbjct: 375 AIFVAALMIGFYGL-LGVAATIALIINIVMVLALMGVFGITLTLPGIAAIVLIIGMALDA 433

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
            V++Y+R+R+       +    D +    N  +      +    I    +       +  
Sbjct: 434 NVLIYERVREE---EKKTHLLVDALRHGFNRAVSTVADANFTVLIIAAILFYVSSGAVRG 490

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           FA  +  G+     ++ F+   ++      R   
Sbjct: 491 FAATLIVGVFTTFFTACFVTRSLVSAWISHRKPR 524


>gi|320355036|ref|YP_004196375.1| protein translocase subunit SecF/D [Desulfobulbus propionicus DSM
           2032]
 gi|320123538|gb|ADW19084.1| protein translocase subunit secF;protein translocase subunit secD
           [Desulfobulbus propionicus DSM 2032]
          Length = 857

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 254/863 (29%), Positives = 420/863 (48%), Gaps = 58/863 (6%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
              + L   +     L+  P+       D +   +    + LGLDL+GG H+VL+VD D 
Sbjct: 6   KLKIWLVIFLLFFSGLVLAPSVYHDLP-DWWKKYLAPAGLKLGLDLQGGMHIVLQVDLDK 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVN 123
                L + + + +S L  + I    M     N I  +  ++   E +   +      ++
Sbjct: 65  AAENSLDLSASDFKSALAAKNINAVRMDTGTPNAILFTLPNTSAIETVKQILKENFPNLD 124

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S++  +         T   I++ L    ++ +  +A+ QS+EIIR RIDQ G++E  + R
Sbjct: 125 SQVEAEA-------GTFPRITLRLKSEEVEFIRKNAVNQSLEIIRNRIDQFGVAEPIVLR 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237
            G ++I++QLPG +DP R   L+G TA++ F  V                +         
Sbjct: 178 QGENQIVVQLPGVKDPQRAMSLIGQTAQLEFKMVAEAPGLNLGQMIDEVTKTGQWREGDS 237

Query: 238 --------------------------------GNQYLVEDKVEISGIHLNGATANFDPKT 265
                                               L+E+ V ++G  +  A        
Sbjct: 238 RKQLNFALQNRLPQGTEIYFEKVIDSKTKKESRIPILLENPVLMTGEMVKNAQVRIGGTF 297

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           ++P V +     G + F  +T  N+ + LA+VLD  V +APVI + I  G AQISGNFT 
Sbjct: 298 NEPYVSLDLTGHGGQVFAHLTEKNVNRRLAIVLDEIVRSAPVIREKILGGSAQISGNFTH 357

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
             A  LA +LR G+LP  ++I++   VGA LG DSI  G  + + G +L++ FM++ Y  
Sbjct: 358 NEATDLAIVLRVGALPAPVDIIQNLTVGASLGQDSIKDGLSSGLFGALLVIAFMVLYYRV 417

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++A+ S+ LN++     L++LGATLTLP IAGI+L IG+ VD+NIL+ ER+R+E    
Sbjct: 418 SGIIANVSLALNILFLFVGLAMLGATLTLPGIAGIILSIGMGVDANILIYERMRDEFALG 477

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+   +D GF++A+ +I D  +T LI  +VLF FG G ++GFAIT+ L IL ++F  + 
Sbjct: 478 KSLRSGVDAGFNKAFWSIVDGQVTTLITALVLFLFGTGPIKGFAITLTLGILFNLFAVLF 537

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC--- 562
             R M   ++  K +K I          +       FMR R     +S +     +    
Sbjct: 538 FSRLMYDSLLSLKWLKRISF------LKLIGKTNFDFMRLRKVAYSVSAVLVALGLIAFV 591

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            +     N G+DF GG  L   A +   L  VR  L + +I  +  Q    E   +V+++
Sbjct: 592 QIMRGHANMGVDFSGGTMLQYKAEQAFSLEEVRGLLRANEISGVDLQQVTNENRLIVKIK 651

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                       +  +     +     T+++   +G  +S +L  K ++ +I+S + +++
Sbjct: 652 KSEEKVSNLGDRISTILGT-DQAHAGFTLESKSEIGASVSADLRNKAVISIILSMLGVVV 710

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           Y+  RF + F L A    + D+   LG   L   E NL  V A+LTL GYS+ND VV++D
Sbjct: 711 YLAFRFDFRFGLAATVATLHDVLAVLGVCWLMDKEMNLLIVTALLTLAGYSLNDTVVIFD 770

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+NM      ++F  +I++SIN+ LGRS+ T M+    +  +  +GG+ +  F+  + 
Sbjct: 771 RIRENMYTDER-LTFFQIINESINQVLGRSIMTGMSVLFCLASLFFFGGATLHDFSFALL 829

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
            G+VVA  SS+F+A+P+L     
Sbjct: 830 VGLVVAFFSSVFVASPLLTITGK 852


>gi|327189121|gb|EGE56306.1| protein-export translocase protein [Rhizobium etli CNPAF512]
          Length = 846

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 301/834 (36%), Positives = 464/834 (55%), Gaps = 19/834 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W  +L  ++    ++IA PN L ++     P  +  +R+ LGLDL+GGSH+VL+V
Sbjct: 2   LHFSRWKTLLIWLVAFAAVVIAAPNLLSEAQRASLPDWLRHDRVMLGLDLQGGSHIVLKV 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  D V   L+     +R+ L+  GI    +      +++   D    +   D++     
Sbjct: 62  ERSDIVKDRLEEAVANVRNALRGAGIRYTGLTGNDRTVSVRITDPAETQKAVDRLKSLTT 121

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      +       E ++S+ +S  +I   ++ A  +S++I+ +RI   G     
Sbjct: 122 TGRDSAPELTLQQG----GEGQLSLQISDADITADVASARTRSLDIVGRRIAGFGYENFL 177

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234
           ++  G  RI +Q+ G  D  RL+ LL   AK+SFH +  + S +  + G           
Sbjct: 178 VRPEGDDRITVQVLGSVDAERLKNLLNQPAKLSFHLIDESMSGQEALNGRWPATSQVLYS 237

Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            D     YLV+     S  ++       DP+T    +    D  G +R  EVT  NIGK 
Sbjct: 238 LDDPPVPYLVDRTAFASAGNMVDIQPVVDPQTQDTSIAYRLDAEGTKRLAEVTGQNIGKH 297

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+V D +V++APVI+ AI +G+ +IS NF+ +    LA MLRAG+LP  L  VEER+V 
Sbjct: 298 LAIVFDDQVMSAPVIDAAITNGEGRISANFSEDGVRDLAVMLRAGALPATLTSVEERSVS 357

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
              G +SI  G  A +  +VL+   MI LY   G++A  S+F N+IL +A LSL GATLT
Sbjct: 358 PTFGGESIVSGLVAGLVAVVLVAALMIALYRILGVIAVVSLFFNLILIIAALSLAGATLT 417

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL +G+AVDSN+L+ ERIREE +   S   ++  GFSRA+STI D+N+T  IA
Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTTHSFAEAVGRGFSRAFSTIVDANVTIFIA 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            V+LFF G  ++RGFA+T+ + IL ++FTA ++ R+++   +  +  + +  + L+    
Sbjct: 478 AVILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRHPRHLPKSVLTH--- 534

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592
           + +   I+FM  R +    S   S+ ++    T GL  GIDF GG  + V A +   D++
Sbjct: 535 LFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLIEVTAKQGNADIA 594

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L  L +G++  +   G  N  +R+  Q G   A+     +V+ ++         +
Sbjct: 595 DLRSRLNDLNLGEVGVERTGGPANARIRIASQGGGENAEQSAATLVRGELEA---DYDFR 651

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E+VGP IS EL     +G+  +  A+L+YIWIRF+W FA+GAI   + D+   LG F 
Sbjct: 652 RVEVVGPAISGELTMMATLGIAAALAAILLYIWIRFEWQFAVGAIIATLHDVIIMLGLFV 711

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L GIEFNLT++AAVLT++GYS+ND VVVYDRMR+N+K YT  +    LID SIN+TL R+
Sbjct: 712 LTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLKRYTK-MPLPILIDASINQTLSRT 770

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           V T+    +++L + ++GG V+ SFA  M FG+ +   SSI+IAAP+L+     
Sbjct: 771 VLTAATTLLALLALYLFGGDVMRSFAFAMLFGVALGTFSSIYIAAPVLIVFRLR 824



 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 66/147 (44%), Gaps = 4/147 (2%)

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +   ++    + A+ +L  ++   +   +L G    L  +A ++ ++G +V+  V++Y+R
Sbjct: 383 MIALYRI-LGVIAVVSLFFNLILIIAALSLAGATLTLPGIAGIVLIVGMAVDSNVLIYER 441

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           +R+      T+ SF + + +  +      V  ++  FI+ + +   G   I  FA+ +A 
Sbjct: 442 IREE---EKTTHSFAEAVGRGFSRAFSTIVDANVTIFIAAVILFFLGSESIRGFAVTLAV 498

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKN 830
           GI+    ++  +   I+      R   
Sbjct: 499 GILTTVFTAFTLTRSIVAVWLARRHPR 525


>gi|94266649|ref|ZP_01290326.1| SecF protein:SecD export membrane protein [delta proteobacterium
           MLMS-1]
 gi|93452696|gb|EAT03247.1| SecF protein:SecD export membrane protein [delta proteobacterium
           MLMS-1]
          Length = 869

 Score =  395 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 248/863 (28%), Positives = 432/863 (50%), Gaps = 53/863 (6%)

Query: 1   MRNN-PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+++  W + L  ++    ++  LP+ L  ++   +   +    ++LGLDL+GG HLVL+
Sbjct: 1   MQSSLKWKIGLLFIMIFFSVVTVLPS-LGVAVPGWWKKNLAPEGLNLGLDLQGGMHLVLQ 59

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL-SFADSRFKENIADKVTLF 118
           VD D  +   L + ++ELR  ++++ + +   R   +   + +  + R  + +   V   
Sbjct: 60  VDIDRAIANSLDLAAEELRELMREQQVTLVRARTDDHHTAVYTLPNVRALDTVQRVVDN- 118

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        +      T   I + L+   ++ +  +A+ QS+EIIR RIDQ G++E
Sbjct: 119 ------DFPDLNMRVESEEGTFPRIYLSLNDEQVEFIEQNAVRQSLEIIRNRIDQFGVAE 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD- 237
             I R G   I++QLPG +DP R  +L+G TA++ F  V  + +        + +     
Sbjct: 173 PVIVRQGLDEIVVQLPGVRDPERAIELIGQTAQLEFKLVDDSPAVDLRQLIDQAIAAGQW 232

Query: 238 -------------------------------------GNQYLVEDKVEISGIHLNGATAN 260
                                                    L+     ++G  +  A   
Sbjct: 233 EWGEDRQQLNQALRGQLPEEREIYFHRTVDRQTDTERREPILLHTTSLMTGEMVRDARVR 292

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
                ++P V +     GAR F ++T  N+G  LA+VLD  V +APVI + I  G AQI+
Sbjct: 293 VGGTFNEPYVSLDLTTRGARVFGQITERNVGNQLAIVLDEVVRSAPVIRERILGGSAQIT 352

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
           G F    A  LA +LR G+LP  + I++   VGA LG DSI +G  + + G  ++++FM+
Sbjct: 353 GGFDHSEASDLAIVLRVGALPAPVEIIQNLTVGASLGQDSIQRGIVSGLFGAFMVMVFMV 412

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           + Y   G++A+ ++ +N++     L+L+ ATLTLP IAGI+L IG+AVD+N+L+ ER+RE
Sbjct: 413 IYYRLSGVIANAALLMNILFIFTGLALMQATLTLPGIAGIILAIGMAVDANVLIFERMRE 472

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E    ++V   ++ G+ +A+STI DS +T LI  + LF FG G ++GFA+T+ L +  ++
Sbjct: 473 EFALGKTVKSGVEGGYGKAFSTIIDSQVTTLITALALFLFGTGPIQGFAVTLSLGVTFNL 532

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   + +  F+   +K++ I    L               R  +      +L    +
Sbjct: 533 IATLFGTKVVYDFLHAKRKLREIHFMKLFSRPQFDFMA---IRRYAYLLSAALLLMGAVA 589

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
           +  +F    N G+DF GG      A +P +L+ VR+ L+   +     Q+ +GE   ++R
Sbjct: 590 VVEIFRGTANLGVDFAGGTMSQYQAEQPFELAEVRTALDRAGLEGAQPQHVEGENRLIIR 649

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           L+ +       T  L    ++         +++   +G  IS  L  K +  ++++ + +
Sbjct: 650 LKEEREVVGDITGTLTAALEEHMP-GTNFILESQSEIGSAISETLRNKALQAILVALLGV 708

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           + Y+ +RF   F L A+ T   D+   LG   L  IE  L  V A+LTL GYS+ND VV 
Sbjct: 709 VCYLALRFDLRFGLAAVATTAHDVLVVLGIAWLLNIEITLLIVTAILTLAGYSLNDSVVA 768

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           +DR+R+N+K    +     +I++SIN+ + R+V TSM     +L + ++GG+VI  F++ 
Sbjct: 769 FDRIRENIKK-RPAEPLSTVINRSINDIMSRTVITSMTTAFVLLSLIIYGGAVIHDFSLT 827

Query: 801 MAFGIVVAASSSIFIAAPILLFI 823
           +  GIVV   SSIF+A+P+L+ +
Sbjct: 828 LLIGIVVGTFSSIFVASPLLMVL 850



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 82/175 (46%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  + ++ I++GIV  +  A  +++++ I ++    + A   L+++I       AL  
Sbjct: 383 TVGASLGQDSIQRGIVSGLFGAFMVMVFMVIYYRLS-GVIANAALLMNILFIFTGLALMQ 441

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++++RMR+   L     + +  ++    +     + +
Sbjct: 442 ATLTLPGIAGIILAIGMAVDANVLIFERMREEFAL---GKTVKSGVEGGYGKAFSTIIDS 498

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +   I+ L + ++G   I  FA+ ++ G+     +++F    +  F++  R   
Sbjct: 499 QVTTLITALALFLFGTGPIQGFAVTLSLGVTFNLIATLFGTKVVYDFLHAKRKLR 553


>gi|51244658|ref|YP_064542.1| protein-export membrane protein SecD [Desulfotalea psychrophila
           LSv54]
 gi|50875695|emb|CAG35535.1| related to protein-export membrane protein SecD [Desulfotalea
           psychrophila LSv54]
          Length = 867

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 265/866 (30%), Positives = 435/866 (50%), Gaps = 60/866 (6%)

Query: 1   MRNNPWLVILYSMICCI--GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           M+ +   + L  + C +    +  +P+F   +  D +   M    + LGLDL+GG HLVL
Sbjct: 14  MK-SKLKIKLVLLFCLVCMSGITLMPSFYSSTP-DWWKKYMAPEGLRLGLDLQGGMHLVL 71

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
           +V+        LQ  +++L+  L +E I        Q + I  +  ++     +   +  
Sbjct: 72  KVNLPKAEENALQFAANDLKDTLAEESISAVRTPSGQADTIVFTLPNASAIGKVKTIIDS 131

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +N +++           +   I++ L+Q   D +  +A+ QS+EIIR RIDQ G++
Sbjct: 132 EFPNINVRIDN-------KEGSFPRIALTLTQEKKDFIYDNAVNQSLEIIRNRIDQFGVA 184

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-- 235
           E  I R G+  I+IQLPG +DP R  +LLG TA++ F  V             +      
Sbjct: 185 EPVIIRQGNDEIVIQLPGVKDPKRALKLLGDTAQLEFKVVSDTPGVNLRQIINQARDTKK 244

Query: 236 ------------------------------------SDGNQYLVEDKVEISGIHLNGATA 259
                                                     L+E+KV ++G  +  A  
Sbjct: 245 WQDGEDTVKLNRAIESLLPEGTSIYFEKDIDPKTGKEIVTPLLLENKVLMTGDMIKDAQV 304

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
                 ++P V +     G R F ++T  N+G+ +A+VLD  V +APVI + I  G AQI
Sbjct: 305 RIGGTFNEPYVSLDMTGRGGRVFAKITEQNVGRRMAIVLDNVVRSAPVIRERIIGGSAQI 364

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           SG+F+ E A  LA +LR G+LP  ++I++   VGA LG DSI KG  + + G +L+++FM
Sbjct: 365 SGSFSHEDAADLAIVLRVGALPAPVDIIQNVTVGASLGQDSINKGLYSGLFGTLLVLIFM 424

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
            + Y   G++A+ ++FLN++L    L++L ATLTLP IAGI+L IG+AVDSN+L+ ER+R
Sbjct: 425 AIYYRLSGVIANTALFLNILLLFTGLAILNATLTLPGIAGIILSIGMAVDSNVLIFERMR 484

Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
           +E    +SV  S++ GF +A+ TI DS +T LI  + LF FG G ++GFAIT+ L I+ +
Sbjct: 485 DEYTLGKSVRASINAGFDKAFWTIVDSQVTTLITAMALFLFGTGPIKGFAITLSLGIIFN 544

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
           +FTA+   R M   I   + MK++          +    +I ++  R     IS +  I 
Sbjct: 545 LFTALFFSRTMFETINSIRPMKTLKF------MELVKRPSIDYLSLRKISFTISTVMVII 598

Query: 560 SICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  +   G    N G+DF GG  L    +    +S VR+  +   +   + Q  + E  
Sbjct: 599 GLFAVIQIGRGAANLGVDFSGGSLLQYKVSSDFSMSEVRNAFKGTPLEGANLQEVENEHQ 658

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +++L+         +   + +           T+++   +G  +S  L  K I+ ++IS
Sbjct: 659 LMIKLKKSDETVANLSEQADKILGS-KITDKTFTLESQSEIGSSVSAVLRDKAILAIVIS 717

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + +++Y+ +RF + F L A      D+   LG   L  IE  L  V A+LTL GYS+ND
Sbjct: 718 MVGVILYLALRFDFRFGLAAAAATFHDVLVVLGLCWLMNIEITLLIVTALLTLAGYSLND 777

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
            VVV+DR+R+N +      SF  +I+ S+N+ + R++  S+   + +L + + GG VI  
Sbjct: 778 SVVVFDRIRENTQKADKHDSFFSIINNSVNQVISRTIIVSLTTVLVLLVLFLMGGPVIHD 837

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLF 822
           F+  +  GI+V   SSIFIA+P+L  
Sbjct: 838 FSFTLLIGIIVGTYSSIFIASPLLTI 863



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 81/178 (45%), Gaps = 4/178 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
               VG  + ++ I KG+   +   + +LI++ I ++    + A T L L+I       A
Sbjct: 393 QNVTVGASLGQDSINKGLYSGLFGTLLVLIFMAIYYRLS-GVIANTALFLNILLLFTGLA 451

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           +      L  +A ++  IG +V+  V++++RMR     YT   S R  I+   ++     
Sbjct: 452 ILNATLTLPGIAGIILSIGMAVDSNVLIFERMRDE---YTLGKSVRASINAGFDKAFWTI 508

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           V + +   I+ + + ++G   I  FAI ++ GI+    +++F +  +   I   R   
Sbjct: 509 VDSQVTTLITAMALFLFGTGPIKGFAITLSLGIIFNLFTALFFSRTMFETINSIRPMK 566


>gi|15965292|ref|NP_385645.1| bifunctional preprotein translocase subunit SecD/SecF
           [Sinorhizobium meliloti 1021]
 gi|307307882|ref|ZP_07587607.1| protein-export membrane protein SecD [Sinorhizobium meliloti
           BL225C]
 gi|15074472|emb|CAC46118.1| Putative protein-export membrane protein [Sinorhizobium meliloti
           1021]
 gi|306901498|gb|EFN32101.1| protein-export membrane protein SecD [Sinorhizobium meliloti
           BL225C]
          Length = 858

 Score =  392 bits (1006), Expect = e-106,   Method: Composition-based stats.
 Identities = 275/841 (32%), Positives = 460/841 (54%), Gaps = 20/841 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +P+  IL  ++   GL  ALPN L +  L  +P+ +P  ++ LGLDLRGGSH+VL+V 
Sbjct: 3   RLSPFKNILIWLVVLAGLAFALPNLLSREQLADWPTWLPHRQVPLGLDLRGGSHIVLKVS 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +D V   LQ   D +   L++  I    +      +     D+       D +   +  
Sbjct: 63  REDIVAERLQSTIDTIADALRQADIRYTGLSGSGQGLQFRLRDATKAPAARDALKALVAP 122

Query: 122 VN-SKLNVDPKKNLLVTTT--EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           V    L  +  + L+   +     + + L+   ID  +S A+ QS+E++R+R+ ++    
Sbjct: 123 VRQGGLFGNSIQELVYEESATSDTLRLRLTDEGIDLRVSDAVAQSIEVVRRRVGEVIAVV 182

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK-------KGFMFGVR 231
             I+R G  R+ +Q+PG  +P RL+ LLG    ++   +  +                V 
Sbjct: 183 PIIERRGGDRLSVQVPGLDEPQRLKDLLGQRGDVALKWLDSSMPAQQAVDTRPPAGSEVL 242

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           +  D     YLVE +   +      A   FDP T +PVV+       A R     + +  
Sbjct: 243 YSLDDPPIPYLVERRAFAAAPDFVEAQPGFDPATSEPVVNARIAAGAAARVAPFLQSDPR 302

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K  A+VLDG+V++  V++ A+     +ISGN + + A  LAA++RAG LP+ L ++EER 
Sbjct: 303 KQFAIVLDGQVISTSVLDGALSGDAVRISGNLSEDGANDLAALMRAGPLPVSLTVIEERT 362

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG + G+D++  G  A +   + +   MI  YG +G+VA  ++ +NV+L +A+LS+ GAT
Sbjct: 363 VGPEDGADAVANGLTAGLIAAIAVAACMIGFYGFFGVVAVIAVIVNVVLIIAVLSVTGAT 422

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           LTLP IAGI+L IG+AVDSN+L+ ER+REE     + +  +LD GF R   +I D+N+T 
Sbjct: 423 LTLPGIAGIILTIGIAVDSNVLIYERLREEARTSGKPLRRALDDGFERVLRSIVDANLTI 482

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            IA  +L + G GA+RGFA+T+ +  + ++ TA S+ R ++    R +  + +     + 
Sbjct: 483 FIAGAILLYLGSGAIRGFAVTLAIGSVTTILTAHSLTRRLIRGWYRRRLPQRLPRGIRTG 542

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPV 589
           FF   D    +FM  R     +    S+ S+ LL + GLN G DF+GG  + + A     
Sbjct: 543 FFSRAD---FRFMAIRNPVFILMTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVA 599

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D + +R+ L+ L +GD+  +     ++ LVR+  Q     A+   + +V+ ++ +     
Sbjct: 600 DGADIRARLDELNLGDVQVEELGSARDVLVRIPSQEAGDNAEQTAVGLVRSELED---QY 656

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +  E+VGP +S EL R G + V  + +A+L+Y+W+RF   FA+GAI   + D+  TLG
Sbjct: 657 VFRRVEVVGPGVSGELTRAGSLAVAAAVLAVLLYVWLRFGRRFAVGAIVATLHDVLLTLG 716

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  L GIEFNL ++AA+LT++ YS++D +V+YDR+R+N+  Y   +    LID SIN+TL
Sbjct: 717 FLVLTGIEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRY-RRMPLSVLIDTSINQTL 775

Query: 770 GRSVYTSMAAFISVLPMAVWGG-SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R+V T++   ++++ + ++GG  ++ SF+  + FG++V   SSI++A P+L+       
Sbjct: 776 SRTVLTAVTTLLALVALYLFGGSGLVQSFSATLIFGVLVGTVSSIYVAGPLLILFNRRNN 835

Query: 829 K 829
           +
Sbjct: 836 R 836


>gi|307317056|ref|ZP_07596497.1| protein-export membrane protein SecD [Sinorhizobium meliloti AK83]
 gi|306897144|gb|EFN27889.1| protein-export membrane protein SecD [Sinorhizobium meliloti AK83]
          Length = 858

 Score =  390 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 275/841 (32%), Positives = 460/841 (54%), Gaps = 20/841 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +P+  IL  ++   GL  ALPN L +  L  +P+ +P  ++ LGLDLRGGSH+VL+V 
Sbjct: 3   RLSPFKNILIWLVVLAGLAFALPNLLSREQLADWPTWLPHRQVPLGLDLRGGSHIVLKVS 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +D V   LQ   D +   L++  I    +      +     D+       D +   +  
Sbjct: 63  REDIVAERLQSTIDTIADALRQADIRYTGLSGSGQGLQFRLRDAMKAPAARDALKALVAP 122

Query: 122 VN-SKLNVDPKKNLLVTTT--EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           V    L  +  + L+   +     + + L+   ID  +S A+ QS+E++R+R+ ++    
Sbjct: 123 VRQGGLFGNSIQELVYEESATSDTLRLRLTDEGIDLRVSDAVAQSIEVVRRRVGEVIAVV 182

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK-------KGFMFGVR 231
             I+R G  R+ +Q+PG  +P RL+ LLG    ++   +  +                V 
Sbjct: 183 PIIERRGGDRLSVQVPGLDEPQRLKDLLGQRGDVALKWLDSSMPAQQAVDTRPPAGSEVL 242

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           +  D     YLVE +   +      A   FDP T +PVV+       A R     + +  
Sbjct: 243 YSLDDPPIPYLVERRAFAAAPDFVEAQPGFDPATSEPVVNARIAAGAAARVAPFLQSDPR 302

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K  A+VLDG+V++  V++ A+     +ISGN + + A  LAA++RAG LP+ L ++EER 
Sbjct: 303 KQFAIVLDGQVISTSVLDGALSGDAVRISGNLSEDGANDLAALMRAGPLPVSLTVIEERT 362

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG + G+D++  G  A +   + +   MI  YG +G+VA  ++ +NV+L +A+LS+ GAT
Sbjct: 363 VGPEDGADAVANGLTAGLIAAIAVAACMIGFYGFFGVVAVIAVIVNVVLIIAVLSVTGAT 422

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           LTLP IAGI+L IG+AVDSN+L+ ER+REE     + +  +LD GF R   +I D+N+T 
Sbjct: 423 LTLPGIAGIILTIGIAVDSNVLIYERLREEARTSGKPLRRALDDGFERVLRSIVDANLTI 482

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            IA  +L + G GA+RGFA+T+ +  + ++ TA S+ R ++    R +  + +     + 
Sbjct: 483 FIAGAILLYLGSGAIRGFAVTLAIGSVTTILTAHSLTRRLIRGWYRRRLPQRLPRGIRTG 542

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPV 589
           FF   D    +FM  R     +    S+ S+ LL + GLN G DF+GG  + + A     
Sbjct: 543 FFSRAD---FRFMAIRNPVFILMTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVA 599

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D + +R+ L+ L +GD+  +     ++ LVR+  Q     A+   + +V+ ++ +     
Sbjct: 600 DGADIRARLDELNLGDVQVEELGSARDVLVRIPSQEAGDNAEQTAVGLVRSELED---QY 656

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +  E+VGP +S EL R G + V  + +A+L+Y+W+RF   FA+GAI   + D+  TLG
Sbjct: 657 VFRRVEVVGPGVSGELTRAGSLAVAAAVLAVLLYVWLRFGRRFAVGAIVATLHDVLLTLG 716

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  L GIEFNL ++AA+LT++ YS++D +V+YDR+R+N+  Y   +    LID SIN+TL
Sbjct: 717 FLVLTGIEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRY-RRMPLSVLIDTSINQTL 775

Query: 770 GRSVYTSMAAFISVLPMAVWGG-SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R+V T++   ++++ + ++GG  ++ SF+  + FG++V   SSI++A P+L+       
Sbjct: 776 SRTVLTAVTTLLALVALYLFGGSGLVQSFSATLIFGVLVGTVSSIYVAGPLLILFNRRNN 835

Query: 829 K 829
           +
Sbjct: 836 R 836


>gi|86357460|ref|YP_469352.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           etli CFN 42]
 gi|86281562|gb|ABC90625.1| protein-export translocase protein [Rhizobium etli CFN 42]
          Length = 846

 Score =  389 bits (997), Expect = e-105,   Method: Composition-based stats.
 Identities = 295/834 (35%), Positives = 464/834 (55%), Gaps = 19/834 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W  +L  ++    ++IA PN L ++     P  +  +R+ LGLDL+GGSH+VL+V
Sbjct: 2   LHFSRWKTLLIWLVAFAAVVIAAPNLLSEAQRASLPDWLRHDRVVLGLDLQGGSHIVLKV 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  D     L+     +R+ L+  GI    +      +++   D    +   D++     
Sbjct: 62  ERSDIAKDRLEEAVANVRNALRGAGIRYTGLTGNDRTVSVRITDPAETQKAVDRLKSLTT 121

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      +       E ++++ +S   I   ++ A  +S++I+ +RI   G     
Sbjct: 122 TGRDSAPGLALQEG----GEGQLALQISDAGITADVASARARSLDIVGRRIAGFGYGNFL 177

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234
           ++  G  RI++Q+ G  D  RL+ LL   AK+SFH +  + S +  + G           
Sbjct: 178 VRPEGDDRIIVQVLGSVDAERLKNLLNQPAKLSFHLIDESISGQEALNGRWPATSQVLYS 237

Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            D     YLV+     +  ++       DP+T    +    D  G +R  EVT  NIGK 
Sbjct: 238 LDDPPVPYLVDRTAFANAGNMVDIQPVVDPQTQDTSIAYRLDAEGTKRLAEVTGQNIGKH 297

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+V D +V++APVI+ AI +G+ +IS NF+ +    LA MLRAG+LP  L  VEER+V 
Sbjct: 298 LAIVFDDQVMSAPVIDAAITNGEGRISANFSEDGVRDLAVMLRAGALPATLTSVEERSVS 357

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
              G+DSI+ G  A +  +VL+   MI LY   G++A  S+F N+IL +A LSL GATLT
Sbjct: 358 PTFGADSIFSGLVAGLIAVVLVAALMIALYRILGVIAIVSLFFNLILIIAALSLAGATLT 417

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL +G+AVDSN+L+ ERIREE +   S   ++  GFSRA++TI D+N+T  IA
Sbjct: 418 LPGIAGIVLIVGMAVDSNVLIYERIREEEKTAHSFADAVGRGFSRAFATIVDANVTIFIA 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            ++LFF G  ++RGFA+T+ + IL ++FTA ++ R+++   +     + +  + L+    
Sbjct: 478 AIILFFLGSESIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARGHPRHLPKSFLTH--- 534

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLS 592
           + +   I+FM  R +    S   S+ ++    T GL  GIDF GG  L V A +   D++
Sbjct: 535 LFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLLEVTAKQGTADIA 594

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L  L +G++  +   G  N  +R+  Q G   A+   + +V+ ++         +
Sbjct: 595 DLRSRLNDLNLGEVGVEGTGGPANARIRIASQGGGENAEQSAVTLVRGELE---TDYDFR 651

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E+VGP IS EL     +GV  +  A+L+YIWIRF+W FA+GAI   + D+   LG F 
Sbjct: 652 RVEVVGPAISGELTMMATLGVAAALAAILLYIWIRFEWQFAVGAIIATLHDVVIILGLFV 711

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L GIEFNLT++AAVLT++GYS+ND VVVYDRMR+N++ Y   +    LID SIN+TL R+
Sbjct: 712 LTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRENLERYRK-MPLPILIDASINQTLSRT 770

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           V T+    +++L + ++GG V+ SF+  M  G+ + + SSI+IAAP+L+     
Sbjct: 771 VLTAATTLLALLALYLFGGDVVRSFSFTMLLGVALGSFSSIYIAAPVLIVFRLR 824


>gi|332994351|gb|AEF04406.1| Acriflavin resistance protein [Alteromonas sp. SN2]
          Length = 866

 Score =  386 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 306/856 (35%), Positives = 495/856 (57%), Gaps = 32/856 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M    +  ++Y+++  +GLL A PN LP S+    P    ++ +SLGLDL+GGSHL+LE 
Sbjct: 1   MTRFSFRGLVYALVILLGLLSAAPNMLPDSLKQHVPQWYSQHTLSLGLDLQGGSHLLLEA 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADK----- 114
           D D      L  YS  L S L+++ I            +  + ++      +  +     
Sbjct: 61  DTDALFARQLDTYSSALFSDLREQNIRYVKHTSKHALAVQFTLSNPDDLYKVKQRAKEVS 120

Query: 115 VTLFLQGVNSKLNVDPKKNLL----VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
           +                +       ++     I + L++     V+  AI +S+E++R+R
Sbjct: 121 LQSDGSSALLITKQGITQQGTAPKGISQKGNVIDLTLTEKYQAAVVKDAINRSLEVVRKR 180

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
           +D+ G++E ++ R GS  IL+Q+PG  DP+ ++ LLGTTA+M FH      +        
Sbjct: 181 LDETGLTEPSVTRQGSDAILVQMPGISDPASVKALLGTTAQMRFHWQTQVKNS-----ES 235

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
               D +G QYL+E  V + G H+  A A F P+T +PVV    D  GAR+F  +T++NI
Sbjct: 236 FTRADINGRQYLLEKHVALEGEHITDAAAVFSPETSQPVVTFRLDNDGARQFATMTKNNI 295

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           G+ LAVVLD  V+TAPVIN  IP G+ +I+G+FT+  A  +A MLR G+LP+ L+I+EER
Sbjct: 296 GRVLAVVLDDTVVTAPVINSVIPGGRGEITGSFTMSEAQDVALMLRTGALPVPLHIIEER 355

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG DLGSD+I  G  + +AG + +++FM+ +YG+WG +A  ++ +N+ L   +L+L GA
Sbjct: 356 TVGPDLGSDAIETGVKSGIAGALGVLVFMVGIYGRWGAIASVALTVNMALVFGVLTLFGA 415

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAG++L +G+AVD+NIL+NERIREE +K +    +L +GF +A+ TI DSN T 
Sbjct: 416 TLTLPGIAGLILTMGMAVDANILINERIREETKKGRPAGSALKIGFDKAFGTIVDSNFTT 475

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           LIA  +LF FG G V+GFA+T+ + ++ S+FT++++ + +M      K  +         
Sbjct: 476 LIAVSLLFVFGSGPVKGFAVTIAIGLITSLFTSVALTKLLMQRA-TRKHQREPINLSSPL 534

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +        F++++   + +S++ ++CS+   F  GL YG+DF GG  + + A + + 
Sbjct: 535 LTMADKLGPFNFLKSKKIALSVSLILTLCSMAFFFKPGLQYGVDFTGGTMMEISAPQ-LS 593

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS--------------VAQTRVLE 636
              +R+ L+     DI+ Q +  E  +L+R       +                Q   +E
Sbjct: 594 TEQLRTVLKQHHFEDIAIQEYGAENQYLLRAPVSEQSNTVPIAEANAGSSTVATQGSNIE 653

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +K+ I +          ++VGPK+S       I+ ++I+   ML Y+W +F+ +FA  A
Sbjct: 654 ALKQVIQDADSTVIFNKVDVVGPKVSDGFADLSILALLIAGGGMLAYLWFQFEAHFATAA 713

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + T++LD+TKT+GF AL GIEFNLTAVAA+L LIGYS+NDKVVV DR+R+ +++     S
Sbjct: 714 LLTVLLDLTKTIGFIALTGIEFNLTAVAALLALIGYSINDKVVVLDRVRELLRISPER-S 772

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             D+I++++N TL R+V+TS+   +++LPMA+ GG  + SFA+PM F +V+  SS++FI 
Sbjct: 773 LADIINEAVNSTLSRTVFTSLTTLLALLPMALVGGDAVSSFAVPMVFAVVIGTSSTLFIT 832

Query: 817 APILLFIYDWRAKNAR 832
           + +L  +   R +  +
Sbjct: 833 SSLLHMLGKRREQKGK 848


>gi|150396393|ref|YP_001326860.1| bifunctional preprotein translocase subunit SecD/SecF
           [Sinorhizobium medicae WSM419]
 gi|150027908|gb|ABR60025.1| protein-export membrane protein SecD [Sinorhizobium medicae WSM419]
          Length = 858

 Score =  377 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 269/841 (31%), Positives = 457/841 (54%), Gaps = 20/841 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +P+  IL  ++   G   ALPN L +  L  +P+ +P  ++ LGLDL GGSH+VL+V+
Sbjct: 3   RFSPFKNILIWLVVLAGFACALPNLLSREQLADWPTWLPHRQVPLGLDLSGGSHIVLQVN 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +D V   L    D +   L++  I    +      +     D        + +      
Sbjct: 63  REDIVAERLHSTIDAIADALRQADIHYTGLSGSGRSLQFRLRDGTKAPAAREALKALSAP 122

Query: 122 VNSKLNVDPKKNLLV---TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           V            LV   + T   + + L+   ID  +S A+ +S+E++R+R+ ++    
Sbjct: 123 VQQDGLFGKSIQELVYEESATNDTLRLRLTDEGIDFRVSAAVARSVEVVRRRVGEVIAVA 182

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL-------PNNSKKGFMFGVR 231
            +I+R  + R+ +Q+PG  +P RL+ LL     ++   +          +++      V 
Sbjct: 183 PSIERRENDRLSVQVPGLDEPQRLKDLLAQRGDVALRWLDLSMPAQQAVDTRPPAASEVL 242

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           +  D     YLVE +   +      A   FDP T +PVVD+        R   + + +  
Sbjct: 243 YSLDDPPIPYLVERRAFAAAPDFVEAQPGFDPATAEPVVDVRIAAGATERIAPILQSDPR 302

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K  A+VLDG+V++  V++ A+     +ISGN + + A  LAA++RAG LP+ L ++EER 
Sbjct: 303 KQFAIVLDGQVISTSVLDSAVSGDAVRISGNLSEDGANDLAALIRAGPLPVSLTVIEERT 362

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG + G+D++  G  A +   + +   MI  YG +GLVA  ++ +NV+L +A+LS+ GAT
Sbjct: 363 VGPEDGADAVANGLTAGLIAALAVAACMIGFYGFFGLVAVVAVIVNVVLIIAVLSVTGAT 422

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           LTLP IAGI+L IG+AVDSN+L+ ER+REE    ++ +  +LD GF R   +I DSN+T 
Sbjct: 423 LTLPGIAGIILTIGIAVDSNVLIYERLREEARSSDKPLRRALDDGFERVLRSIVDSNLTI 482

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            IA V+L   G GA  GFA+T+ +  L ++ TA S+ R ++    R ++   +     + 
Sbjct: 483 FIAGVILLSLGSGAFSGFAVTLAVGSLTTILTAHSLTRRLIRGWYRRRRPHRLPRGIRTG 542

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPV 589
           FF   D    +FM  R     +    S+ S+ LL + GLN G DF+GG  + + A     
Sbjct: 543 FFSRAD---FRFMAIRNPVFILMTALSLASLVLLTSLGLNMGADFRGGSVIELRARTGVA 599

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D + +R+ L+ L +G++  +     ++ L+R+  Q     A+   + +V+ ++ +     
Sbjct: 600 DRADIRARLDELNLGEVQIEELGSARDVLIRIPSQEAGDNAEQTAVGLVRAELEDQYDF- 658

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +   +VGP +S EL R G + +  + +++L+Y+W+RF   FALGA+   + D+  TLG
Sbjct: 659 --RRVAVVGPGVSGELTRAGSLALAAAVLSVLLYVWLRFGRRFALGAVVATLHDVLLTLG 716

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  L GIEFNL ++AA+LT++ YS++D +V+YDR+R+N+  Y   +    LID SIN+TL
Sbjct: 717 FLGLTGIEFNLASIAALLTIVCYSLSDTMVIYDRVRENLVRY-RRMPLSVLIDTSINQTL 775

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R+V TS+   ++++ + ++GGSV+  +F+  + FG++V   SSI++A P+L+      +
Sbjct: 776 SRTVLTSLTTMLALVALYLFGGSVLVQTFSATLIFGVLVGTVSSIYVAGPLLILFNRRNS 835

Query: 829 K 829
           +
Sbjct: 836 R 836


>gi|227821944|ref|YP_002825914.1| bifunctional preprotein translocase subunit SecD/SecF
           [Sinorhizobium fredii NGR234]
 gi|227340943|gb|ACP25161.1| protein-export membrane protein SecD [Sinorhizobium fredii NGR234]
          Length = 855

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 278/841 (33%), Positives = 459/841 (54%), Gaps = 25/841 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +P    L  ++   G   ALPN +P+  L  +P+ +P  ++ LGLDL+GGS +VL+VD
Sbjct: 3   KFSPLKNTLIWLVVLAGFAFALPNIIPREQLAGWPAWLPHRQVPLGLDLQGGSDIVLKVD 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D  V   L+     +   L+   IG   +     +I     D+         +      
Sbjct: 63  RDSLVADRLEATIAAIARALRDADIGYTGLSGSGQEIQFRLRDASKSAAARAALAALTAP 122

Query: 122 VNSKLNVDPKKNL-----LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           V +    D    +       T+ ++ + + L+   ID  +S A+ Q+ E++R+RI ++  
Sbjct: 123 VEA--PDDTGSPVRELIADETSGQEPLRLRLTDEGIDFRLSAALTQATEVVRRRIGEVVA 180

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-- 234
            E  I+R G  R+ IQ+PG +DP RL+ LLG    ++F  +  +   +  +         
Sbjct: 181 VEPVIRRRGDDRLSIQIPGLEDPQRLKDLLGQRGNLAFRWLDSSMPPQQALDTQPPAASE 240

Query: 235 -----DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                D     YLVE +  +S      A    DPKT +PVVD+      ++R   + +  
Sbjct: 241 ILYSLDDPPVPYLVERQALVSTPDFADAQPGLDPKTGEPVVDLKLTADSSQRIASLLQSA 300

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
             +  A+VLDG+V++ P +   I    A++S + + E A   AA+LRAG LP+ L ++EE
Sbjct: 301 SRRQFAIVLDGQVVSTPALGDVIEGDTARLSADLSEEGAEDFAALLRAGPLPVSLTVIEE 360

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG ++G+D+I  G  A +     +   MI  YG +GLVA  ++ +NV+L +A+LSLLG
Sbjct: 361 RTVGPEVGTDAIATGLKAGLVAAAAVAFCMIGFYGFFGLVAVIAVIVNVVLIIAVLSLLG 420

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            TLTLP IAGI+L IG+AVDSN+L+ ER+REE    ++ +  +LD GFSR  ++IFD+N+
Sbjct: 421 ITLTLPGIAGIILTIGVAVDSNVLIYERLREEVRSSSEPLRKALDNGFSRVLTSIFDANL 480

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA  +LF  G GA+RGFA T+ +  + ++ TA S+ R ++    R ++ K +     
Sbjct: 481 TMLIAGAMLFL-GTGAIRGFAATLAIGSVTTILTAHSLTRRLIRGWYRRRRPKHLPRGIR 539

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN-R 587
           + F        I+FM  R     +    S+ S+ LL + GLN G DFKGG  L + +   
Sbjct: 540 TGF---FAEADIRFMALRNPVFILMASLSLASLVLLVSLGLNMGADFKGGSLLELRSKAG 596

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             D++ +R+ L+ L + ++  Q     ++ L+R+  Q     A    + +V+ ++ +   
Sbjct: 597 AADVADLRARLDELNLAEVQIQELGSARDILLRIPSQEAGDNADQTAMGLVRAELED--- 653

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
               +  E+VGP +S EL R G + V  + +A++ Y+W+RF W FA GA+ T + D+  T
Sbjct: 654 DYIFRRVEVVGPAVSGELTRAGTLAVAAAILAIIFYVWLRFDWKFAAGAVITTLNDVLLT 713

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +GF  + GIEFNL ++AA+LT++ YS+ND +VVYDR+R+N+  Y   +    LID SIN+
Sbjct: 714 MGFLVVTGIEFNLASLAALLTIVCYSLNDTMVVYDRVRENLARY-RRMPLSVLIDTSINQ 772

Query: 768 TLGRSVYTSMAAFISVLPMAVWG-GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ T++   ++++ + ++G   V+ SF+  + FG+V+   SSI+IA P+L+     
Sbjct: 773 TLSRTILTAITTALALVALYLFGESRVVQSFSATLLFGVVIGTISSIYIAGPVLILFNRR 832

Query: 827 R 827
            
Sbjct: 833 N 833



 Score = 97.8 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 53/120 (44%), Gaps = 3/120 (2%)

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +L GI   L  +A ++  IG +V+  V++Y+R+R+ ++  ++S   R  +D   +  L 
Sbjct: 416 LSLLGITLTLPGIAGIILTIGVAVDSNVLIYERLREEVR--SSSEPLRKALDNGFSRVLT 473

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                ++   I+   M   G   I  FA  +A G V    ++  +   ++   Y  R   
Sbjct: 474 SIFDANLTMLIA-GAMLFLGTGAIRGFAATLAIGSVTTILTAHSLTRRLIRGWYRRRRPK 532


>gi|295135617|ref|YP_003586293.1| bifunctional preprotein translocase subunit SecD/SecF [Zunongwangia
           profunda SM-A87]
 gi|294983632|gb|ADF54097.1| bifunctional preprotein translocase subunit SecD/SecF [Zunongwangia
           profunda SM-A87]
          Length = 996

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 203/801 (25%), Positives = 352/801 (43%), Gaps = 43/801 (5%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
           V+  +    + LR  + K G+   +++++ N  +I +    ++    I + +    Q   
Sbjct: 184 VDESITSAFEVLRKRIDKFGVTQPNIQRLGNSGRILVELPGAKDVNRIQNLLQSTAQLEF 243

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ- 182
             +  + +    +    + +  V+S+      +    +Q+   I   +     S +    
Sbjct: 244 WHVFKNTEFGGFLAQANQVLKNVVSEEEKATEVIDTTKQTDSDIDDLLADAEDSTAVQTN 303

Query: 183 ---------RLGSHRILIQLPGEQDPSRLRQLLGTTA--KMSFHKVLPNNSKKGFMFGVR 231
                           ++     QD +++   L       +   +        G      
Sbjct: 304 NPLFDLVIGPGAQGGPVLAYFNVQDTAKVNSYLSMPQVRNLLPAEQRYARFVWGVPDDET 363

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                   +   E++  +SG  +  A   +D      V                   +  
Sbjct: 364 NATGLYALKSNRENQPPLSGSVITDAQQTYDQVGRVAVSMQMDGTGAKIWEEMTGYASNN 423

Query: 292 KPLAVVLDGRVLTAPVIN--QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +    ++   V+ +       AI  G+++I+G+F+IE    LA +LRAG LP    I+  
Sbjct: 424 QTQIAIVLDNVVYSAPGVSTGAISGGRSEITGDFSIEEGKDLANVLRAGKLPASAEIISS 483

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
             VG  LG ++I  G  +    LVL++L+MI  YGK GL AD ++ +N++    +L+ LG
Sbjct: 484 EIVGPSLGQEAIDSGMLSFGIALVLVLLWMIFYYGKAGLFADVALIVNILFIFGILAGLG 543

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           A LTLP IAGIVL IG++VD+N+L+ ERI+EE  K +S   S+  GFS A S+I D+NIT
Sbjct: 544 AVLTLPGIAGIVLTIGMSVDANVLIFERIKEELAKGKSQAESIKDGFSNALSSILDANIT 603

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             +   +L   G G ++GFA T+ + I  S+FTAI I R  +    +  K          
Sbjct: 604 TGLTGFILLILGTGPIKGFATTLLIGIATSLFTAIFITRLFIDGYGKNGKSLEFATGITK 663

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
             F         F+  R     IS +  + S+  L T  LN G+DF GG    V  ++ V
Sbjct: 664 NLFKGM---NTDFLGKRKVAYIISGILIVISLGSLLTQQLNLGVDFVGGRTYTVRFDQDV 720

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKKKIT- 643
             + V++ LE       +       +     N+ +  +    D   Q  + E ++  +  
Sbjct: 721 SPTEVQNILEERFGNAEAKTFGPNNQLKITTNYKIEEEGTAIDEEIQEGLFESLQPYLPG 780

Query: 644 ----------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
                            I  +  VGP I+ ++       V+ S I + +YI +RF+ W F
Sbjct: 781 DLSEDEFINGSSDKTVGIMESMKVGPTIAEDIKAASFWAVLGSLIVVFLYILLRFRKWQF 840

Query: 693 ALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           +LGA+  +  D+   LG F+L      F +E N   +AA+LT+IGYS+ND VVV+DR+R+
Sbjct: 841 SLGAVVAVFHDVLIVLGVFSLLYKFMPFSLEINQAFIAAILTVIGYSLNDTVVVFDRIRE 900

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +  + T+      ++ ++N TL R++ TS+   + +L + ++GG  I  F   +  G+V
Sbjct: 901 YVNEH-TTWKLGKTVNAALNSTLSRTLNTSLTTLVVLLAIFIFGGESIRGFMFALIVGVV 959

Query: 807 VAASSSIFIAAPILLFIYDWR 827
           V   SSIFIA P++      +
Sbjct: 960 VGTYSSIFIATPVMFDSVKKK 980



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 116/355 (32%), Gaps = 10/355 (2%)

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
              G GA  G  +        +   +   +  +   +   ++                  
Sbjct: 309 LVIGPGAQGGPVLAYFNVQDTAKVNSYLSMPQVRNLLPAEQRYARFVWGVPDDETNATGL 368

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
            A++  R     +  S++                      G ++          +  +  
Sbjct: 369 YALKSNRENQPPLSGSVITDAQQTYDQVGRVAVSMQMDGTGAKIWEEMTGYASNNQTQIA 428

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +    +   +     G  +                 +  +++             ++EIV
Sbjct: 429 IVLDNVVYSAPGVSTGAISGGRSEITGDFSIEEGKDLANVLRAGKLPASAEI--ISSEIV 486

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + +E I  G++   I+ + +L+++   +     L A   LI++I    G  A  G  
Sbjct: 487 GPSLGQEAIDSGMLSFGIALVLVLLWMIFYYG-KAGLFADVALIVNILFIFGILAGLGAV 545

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG SV+  V++++R+++ +       S  + I    +  L   +  ++
Sbjct: 546 LTLPGIAGIVLTIGMSVDANVLIFERIKEELA---KGKSQAESIKDGFSNALSSILDANI 602

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              ++   + + G   I  FA  +  GI     +S+F A  I     D   KN +
Sbjct: 603 TTGLTGFILLILGTGPIKGFATTLLIGIA----TSLFTAIFITRLFIDGYGKNGK 653



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/215 (20%), Positives = 96/215 (44%), Gaps = 13/215 (6%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96
           +      ++ GLDL+GG +++L++  +D + G      D   +    E     S+    +
Sbjct: 77  NTAKDKELNKGLDLKGGINVILQISVEDIIRGLANDSKDPAFNKALTE-AREESVTSQDD 135

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
            I + F       +        L   +   N     ++    +  ++  ++      + +
Sbjct: 136 YIDIFFEKFDAIPDA------KLASPDIFANKTLSDDITYDMSNDQVKPII-----RRKV 184

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
             +I  + E++R+RID+ G+++  IQR   S RIL++LPG +D +R++ LL +TA++ F 
Sbjct: 185 DESITSAFEVLRKRIDKFGVTQPNIQRLGNSGRILVELPGAKDVNRIQNLLQSTAQLEFW 244

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            V  N    GF+     +  +  ++     +V  +
Sbjct: 245 HVFKNTEFGGFLAQANQVLKNVVSEEEKATEVIDT 279


>gi|163786107|ref|ZP_02180555.1| protein-export membrane protein SecD/SecF [Flavobacteriales
           bacterium ALC-1]
 gi|159877967|gb|EDP72023.1| protein-export membrane protein SecD/SecF [Flavobacteriales
           bacterium ALC-1]
          Length = 1015

 Score =  375 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 210/825 (25%), Positives = 364/825 (44%), Gaps = 51/825 (6%)

Query: 49  DLRGGSHLVLEVD-EDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN--KITLS 101
           DLR      +  D     +   +        + LR+ +   G+   +++++ N  +I + 
Sbjct: 178 DLRDIVEFDMSDDEVKGIIETKIDESIVSAFEVLRNRIDGFGVSSPNIQRLGNSGRILIE 237

Query: 102 FADSRFKENIADKVTLFLQGVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
              ++ K+ + D +T   Q    +   + +    +         +       ID+V    
Sbjct: 238 LPGAKDKKRVVDIITKTAQLQFWETYKDQEVLPYIGQVNNAMVAAAAEKPEAIDEVEEAL 297

Query: 160 IEQS------MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK-- 211
           +EQ        E+  Q          +       R           ++ ++ + T     
Sbjct: 298 VEQDSTANAIDELTGQIATDSTDVVDSNPIGYQGRGGHPSVIGMFLTKDKEKIMTALNNP 357

Query: 212 ----MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
               +   ++       G         +    +   +++  +SG  +  A   FDP  + 
Sbjct: 358 KNRALLPAEMRYVKFAWGVQKKDSEFVELYAIKTNRDNQPPLSGAVITDARQEFDPVNNP 417

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA---IPSGKAQISGNFT 324
            V      +          + N       ++   ++ +         I  G++QISG+F+
Sbjct: 418 AVGMAMNAKGAKIWEEMTKKANEEDGNIAIVLDNIVYSAPGVSQVGGISGGRSQISGSFS 477

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           +  A  LA +LRAG LP    IV+   VG  LG ++I  G  + +  L  ++L+MI  YG
Sbjct: 478 LTEAVDLANVLRAGKLPASAEIVQADEVGPSLGQEAIDSGMKSFLIALTFVLLWMIFYYG 537

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           K G+ AD ++  N++L   +L+ LGA LTLP IAGIVL IG++VD+N+L+ ERIREE  K
Sbjct: 538 KAGIFADVALLFNILLIFGVLASLGAVLTLPGIAGIVLTIGISVDANVLIFERIREELAK 597

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            +S   S+  GFS A S+I D+NIT  +  ++LF FG G ++GFA T+ + IL S+FTAI
Sbjct: 598 GKSQKESIKDGFSNALSSILDANITTGLTALILFVFGTGPIKGFATTLIIGILTSLFTAI 657

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
            I R ++ + +                  +   I I F++ R     IS +  + S+  L
Sbjct: 658 FITRLLIDWWVNRGGKLDFSTTMTK---GLFKNININFLKKRKIAYVISGILILASLGSL 714

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQY 623
           FT GL+ GIDF GG    V   +PV +  V+ +L ++             +     + + 
Sbjct: 715 FTTGLDQGIDFVGGRTYQVRFEQPVSVEEVKGDLNAVFNSAEVKTIGGDNQLKISTKYKV 774

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG---------------PKISRELIRK 668
           +         V   +   + + +P        + G               P I+ ++ + 
Sbjct: 775 EDNSVETDEEVQSKLFGALQKYLPDGMTYPEFVDGSGDAKIGKMLSSKVSPTIADDIKKS 834

Query: 669 GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721
            +  V+ S + + +YI  RF KW F+LGA+  +  D+   LG F+L      F +E +  
Sbjct: 835 SLWAVLGSLVVVFLYILFRFKKWQFSLGAVAAVFHDVLIVLGIFSLTWKFMPFSMEIDQA 894

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            +AA+LT+IGYS+ND VVV+DR+R+ +  + TS  F   I+ S+N TL R++ TS+   +
Sbjct: 895 FIAAILTVIGYSLNDTVVVFDRIREFLNEH-TSWEFDKTINASLNSTLSRTLNTSVTTLV 953

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +L M  +G   +      +  G+VV   SS+FIA P++      
Sbjct: 954 VLLAMFAFGADSLRGLLFALIIGVVVGTYSSMFIATPLMYDTAKK 998



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 38/177 (21%), Positives = 82/177 (46%), Gaps = 4/177 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             + VGP + +E I  G+   +I+   +L+++   +     + A   L+ +I    G  A
Sbjct: 501 QADEVGPSLGQEAIDSGMKSFLIALTFVLLWMIFYYG-KAGIFADVALLFNILLIFGVLA 559

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G    L  +A ++  IG SV+  V++++R+R+ +       S ++ I    +  L   
Sbjct: 560 SLGAVLTLPGIAGIVLTIGISVDANVLIFERIREELA---KGKSQKESIKDGFSNALSSI 616

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +  ++   ++ L + V+G   I  FA  +  GI+ +  ++IFI   ++ +  +   K
Sbjct: 617 LDANITTGLTALILFVFGTGPIKGFATTLIIGILTSLFTAIFITRLLIDWWVNRGGK 673



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/183 (23%), Positives = 77/183 (42%), Gaps = 12/183 (6%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
           N + LGLDL+GG + ++++   D + G      D + +  K         +  Q     S
Sbjct: 97  NAMKLGLDLKGGINAIIQISVKDILKGLSNNSKDPIFN--KALEDAEELQKDAQESYLES 154

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
           F          D +    +  +  +  +     +V     +  +      I+  I  +I 
Sbjct: 155 FF------RAFDAIKGDTKLASPDIFANRDLRDIVEFDMSDDEVKGI---IETKIDESIV 205

Query: 162 QSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
            + E++R RID  G+S   IQR   S RILI+LPG +D  R+  ++  TA++ F +   +
Sbjct: 206 SAFEVLRNRIDGFGVSSPNIQRLGNSGRILIELPGAKDKKRVVDIITKTAQLQFWETYKD 265

Query: 221 NSK 223
              
Sbjct: 266 QEV 268


>gi|328953548|ref|YP_004370882.1| protein-export membrane protein SecD [Desulfobacca acetoxidans DSM
           11109]
 gi|328453872|gb|AEB09701.1| protein-export membrane protein SecD [Desulfobacca acetoxidans DSM
           11109]
          Length = 888

 Score =  375 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 261/866 (30%), Positives = 426/866 (49%), Gaps = 59/866 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++      +L  ++    +++ LP+  P    D +   + K    LGLDL+GG HL+L+V
Sbjct: 2   LKKIRLKFLLLFVLTIASIILMLPSVTPHLP-DWYKQYIWKEGFRLGLDLKGGMHLILQV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D D  V   L +   +L+   +K G+ +         +T +   +  +      V     
Sbjct: 61  DMDQAVQNNLTIQGQDLKELAEKRGLDLQVGLPHAGVLTANLVKADEQSAFNQLVKEEFS 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  K             +    ++ L    + ++  +   QS+E+IR RIDQ G++E  
Sbjct: 121 QLEVKG-------STRQGSGVVYTLALRPQVVTELQDNTRSQSLEVIRNRIDQFGVTEPV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--- 237
           I   G  +I++QLPG QDP R   L+G TA++ F  V  ++                   
Sbjct: 174 IVPQGDDQIVVQLPGLQDPQRAMDLIGQTAQLEFKLVDDSHGLNLEELIDEASARGRLKP 233

Query: 238 -----------------------------------GNQYLVEDKVEISGIHLNGATANFD 262
                                                  LV+ K  ++G  +  A     
Sbjct: 234 GYTREELNLALAGKLPPDTEVYIEKSIDRATGSIKRIPLLVQKKALMTGAAVKSAAVRIG 293

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +P V + F   GAR+F ++T  N+ + LA++LDG V +AP I + I  GKAQI+G 
Sbjct: 294 DYN-EPYVSVDFSSSGARQFGQITGANVNRRLAIILDGVVRSAPTIKERIGGGKAQITGA 352

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           +T E A  LA +LRAG+LP  + IV+   VG  LG DSI+KG  A V G  L++ FMI  
Sbjct: 353 YTSEEAHDLAIVLRAGALPASVRIVQNITVGPTLGLDSIHKGVVAGVIGTFLVIGFMIFY 412

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   GLVA++++ LN+I+ L  LSL+ ATLTLP IAGI+L IG+AVDSN+L+ ER+REE 
Sbjct: 413 YRLSGLVANYALILNIIMLLGALSLVHATLTLPGIAGIILSIGMAVDSNVLIYERMREEF 472

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
              + +   +D G+ +A+ TI DS++T LI  V LF FG G +RGFA+T+ + +++++FT
Sbjct: 473 HAGKPLKAGVDGGYDKAFLTIVDSHVTTLITAVALFLFGTGPIRGFAVTLSVGVILNLFT 532

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A+   R +  ++I  + + ++          +       F+  R + V +S L     + 
Sbjct: 533 ALFGTRVVYDYLIFKRWLTNLSF------LEVFRKTHFDFIGFRKYTVVVSGLLCALGLV 586

Query: 563 LLFT---HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
                     N G++F GG  +   A++P  +  VR  L     G    Q  D     +V
Sbjct: 587 AFIQLSRGHGNLGVEFAGGAMVQFKADKPFTVEAVRDALNQKGWGHAEIQPTDAGGGLMV 646

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           +L+            L ++  + +      +I+ T  +G  +S++L +  I+ ++IS I 
Sbjct: 647 KLKKSEESVGKMADELAVIFNQ-SLSGNHFSIEGTSEIGASVSKDLRKWAIIAIVISLIG 705

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           +++Y+  RF++ F + A      D+   LG F L   E  L  V A+LTL GYS+ D VV
Sbjct: 706 IIVYLAWRFEFVFGVAAAIATFHDVLAVLGIFYLLDKEITLLVVTALLTLAGYSLTDTVV 765

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           V+DR+R+N+    T  +   +I+ S+NE L R++ T+   F+ VL + ++GG VI  FA+
Sbjct: 766 VFDRIRENLAK--TRDNLGKIINLSVNEVLSRTIVTTTTVFLVVLALFIFGGVVIQDFAL 823

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYD 825
            M  G+++   SSIF+A+PI+     
Sbjct: 824 AMLLGVIIGTYSSIFVASPIIHAWRK 849


>gi|261415266|ref|YP_003248949.1| protein-export membrane protein SecD [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371722|gb|ACX74467.1| protein-export membrane protein SecD [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302325439|gb|ADL24640.1| protein-export membrane protein SecDF [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 870

 Score =  374 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 211/829 (25%), Positives = 383/829 (46%), Gaps = 46/829 (5%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDF-----VNGFLQMYSDELRSFLKKEGIGVFSMR- 92
           +    ++ GLDL GG+ + L++D+        +        + +R+ + + G+    +  
Sbjct: 48  LSSRSVNFGLDLAGGTSITLQIDQSGLKDGDDIKDIQAQSLEIIRNRVDQYGLSEPQISP 107

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
              ++I +  A           V    +     L    K   +V   ++ ++   +    
Sbjct: 108 TGDDRIVVELAGVDDS-TAKALVGSTAKLEFKILAESEKFTQVVGLIDQYLTRQTTDIIA 166

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP------------- 199
           D   + +++          D+  ++    +   + +    +                   
Sbjct: 167 DSAKTDSVKTDSVKKEALSDEELLAGGVAKAETAEKKDSAVAEAAPADVVGQSLSSFFIS 226

Query: 200 ------------SRLRQLLGTTAKMSFHKVL-PNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                        ++++LL T                 G     R         YL++ +
Sbjct: 227 YGNGGFIAEESVEKVKKLLATEGVQKLIPRDVAFAFGSGLEKLRRDANIKAKRLYLLKRR 286

Query: 247 VEISGIHLNGATANFDPKTH---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
            E+ G  +  A            +  V++ F  +G ++F  VT  N+GK +A+VLD +V+
Sbjct: 287 AEMGGDDITDARPYRVSDGMSAGEVAVNLKFGGIGPKKFSAVTAANVGKQMAIVLDNQVI 346

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           +APVI   IP+G+AQI+G   +  A  LA +L+AG+L   + I+E R+VGA LG ++I +
Sbjct: 347 SAPVIRDRIPNGEAQITGLDDMAEANRLAVVLKAGALKAPMQIIESRSVGATLGEENIVQ 406

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  +   GL+L ++FM+  Y   G +A   + +N ++T A++S+  ATLTLP IAG +L 
Sbjct: 407 GFGSGAIGLLLCLVFMVAYYRLGGFIASIGVMINALVTAAVMSVFNATLTLPGIAGFILV 466

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+++D+N+++ ERIREE +   +   ++  G+ RA+S I DSN+T ++  ++L+  G G
Sbjct: 467 VGMSLDANVIIYERIREELKNGLTARAAVAKGYERAFSAILDSNLTTVLTGLILYKIGTG 526

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
           +V+GF +T+ + IL S+F AI++ RA++ + +  +   ++ I      F   +   +  M
Sbjct: 527 SVKGFGLTLTIGILTSLFCAITVSRAVLDWRLAKRDRTTLSIG---SGFKALNNANLPLM 583

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R     +S +  I SI  +   G ++ IDF GG    +     V      +   S   
Sbjct: 584 KNRGKFKVLSWILIIASIACIAVKGFDFSIDFTGGQVYTIQYQDDVKHETDLNKALSKAG 643

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
              +     G  +         GD    T     + K          I   + VGP I +
Sbjct: 644 IQGARVRSLGGTSANSYQISVRGDD---TSFELAMAKAFEAANQKCQIVAKDAVGPTIGK 700

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           EL    I+ VII+ + + +Y+W RF      F + A+  LI D   TLGF + F + F+ 
Sbjct: 701 ELRFNAILSVIIAWLCIALYVWFRFGKLGLGFGVAAVLGLIHDTIITLGFISAFSLSFDG 760

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +A++LT+IGYSVND +V +DR+R+N  L+ +   +   I+ S+N+   R+V TS+   
Sbjct: 761 ALIASLLTMIGYSVNDTIVNFDRIRENTALFGS-AKYEQTINSSLNQCFSRTVITSLTTL 819

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              + +AV GGS I  F +   FGI++   SS+ + +PI+L+      K
Sbjct: 820 FVCVVLAVKGGSSIRDFGLVQCFGILIGTYSSVCVCSPIVLWWSKKFKK 868


>gi|225010583|ref|ZP_03701054.1| protein-export membrane protein SecD [Flavobacteria bacterium
           MS024-3C]
 gi|225005412|gb|EEG43363.1| protein-export membrane protein SecD [Flavobacteria bacterium
           MS024-3C]
          Length = 980

 Score =  372 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 196/800 (24%), Positives = 361/800 (45%), Gaps = 37/800 (4%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
           ++  +    + LR  +   G+   ++++  N  +I +    ++      D ++   Q   
Sbjct: 185 IDESIVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGAKDIARAQDLLSSTAQLEF 244

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +      +++          +        +    A E    +     D +   ++ +  
Sbjct: 245 WETYPPNNQDIASFFVAANERLKSLVVTEKETQKPASEIDSLLADVAQDSLANQQNPLID 304

Query: 184 LGSHR---ILIQLPGEQDPSRLRQLLGTTA--KMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           L   +           +D + +   L      ++    +               +     
Sbjct: 305 LIRGQGQGYETFKFSVRDTATVGAYLRMKEIRRLIPASLANVKFVWERPSANSEVVGLYA 364

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD-NIGKPLAVV 297
            +   ++   ISG  ++ A  +FD  +   V      +             N    +A+V
Sbjct: 365 LKSNRDNTPRISGDVVSDARDDFDQFSRPAVSMTMNTKGAKEWEKLTGDAFNNQTGIAIV 424

Query: 298 LDGRVLTAPVINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           LD +V TAP ++      G+++I+G+FT+     ++ +LRAG LP    I++   VG  L
Sbjct: 425 LDNKVYTAPGVSSGPISGGRSEITGSFTVNETKDISNVLRAGKLPASAEIIQSEIVGPSL 484

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G ++I  G  +    +VL++L+MI+ YG+ GL AD ++ LN++L   +L  L A LTLP 
Sbjct: 485 GQEAIDSGFNSFSLAMVLVLLWMILYYGRAGLFADIALLLNIVLIFGVLVSLNAVLTLPG 544

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL IG++VD+N+L+ ERI+EE  K +    ++  GFS A S+I D+NIT  +  ++
Sbjct: 545 IAGIVLTIGMSVDANVLIFERIKEELAKGKGKAIAIADGFSNALSSILDANITTGLTAII 604

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           LF FG G ++GFA T+ + I+ S+FTAI I R ++      K          +    +  
Sbjct: 605 LFVFGSGPIKGFATTLLIGIITSLFTAIFITRLLIDGYTAKKSAS--LDFNTAITKNLFK 662

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I F+  R     +S  F + S+  LFT GL  G+DF GG    V   + V+ S + S
Sbjct: 663 QPNINFLGKRTIAYAVSGAFVLVSLGSLFTQGLQQGVDFIGGRSYTVRFEQAVNPSELSS 722

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQ------PGDSVAQTRVLEMVKKKITEIVPLST 650
            L  +     + + +  +    +   Y+        D+  Q  +   ++K +        
Sbjct: 723 ELSDVFGTGTNVKTYGEDNQVKITTAYKVDVEGIEVDNEIQNSLYTSLQKYLPAGTSYED 782

Query: 651 I-----------QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
                         +  VGP I+ ++     + ++ S + + +YI +RF+ W F+LGA+ 
Sbjct: 783 FIVGDGSGTVGIMQSSKVGPTIADDIKNNAFLAILGSLLVVFLYILLRFRKWQFSLGAVI 842

Query: 699 TLILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  D+   LG F+L G      +E +   +AA+LT+IGYS+ND VVV+DR+R+ +    
Sbjct: 843 AVFHDVLIVLGIFSLLGKYMPFNMEIDQAFIAAILTVIGYSLNDTVVVFDRIREIIAE-- 900

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                 +  + ++N TL R++ TS+   + +L + ++GG  +  F   M  G++V   SS
Sbjct: 901 KGWKSGENTNLALNSTLSRTLNTSLTTLVVLLSIFIFGGESLRGFMFAMIIGVLVGTYSS 960

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           +FIA PI+      + ++ +
Sbjct: 961 LFIATPIMFDFLKKKVQSGK 980



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/191 (21%), Positives = 84/191 (43%), Gaps = 20/191 (10%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
             K  ++ GLDL+GG ++ L++   D + G      + + +  K       + +   +  
Sbjct: 79  AKKKELNKGLDLKGGINVTLQISVKDILKGLANNSKNPVFN--KALADADNASKSSDDTY 136

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
                         +        +     +              I+  +S + +  ++S 
Sbjct: 137 -------------LNLFFESFDAIKGDTKLADPSIFANKALSDAINFQMSDDEVRPILSQ 183

Query: 159 AIEQSM----EIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
            I++S+    E++R+RID  G+++  IQR   S RIL++LPG +D +R + LL +TA++ 
Sbjct: 184 KIDESIVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGAKDIARAQDLLSSTAQLE 243

Query: 214 FHKVLPNNSKK 224
           F +  P N++ 
Sbjct: 244 FWETYPPNNQD 254


>gi|332521577|ref|ZP_08398030.1| protein-export membrane protein SecD [Lacinutrix algicola 5H-3-7-4]
 gi|332042666|gb|EGI78866.1| protein-export membrane protein SecD [Lacinutrix algicola 5H-3-7-4]
          Length = 1005

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 220/800 (27%), Positives = 361/800 (45%), Gaps = 49/800 (6%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123
           ++  +      LR+ + + G+   +++++    +I +     +  E     +T   Q   
Sbjct: 187 IDESINSALQVLRTRIDQFGVASPNIQRLGTSGRILVELPGVKDVERAKALITGTAQLEF 246

Query: 124 SK------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI------EQSMEIIRQRI 171
                   L             E+E ++  + +   +            + + E      
Sbjct: 247 WFAMKADGLYQYMSDVNAFLKNEQEAAVTATDSTAVEADEAEEADDLIGDLTGETDETTT 306

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA--KMSFHKVLPNNSKKGFMFG 229
                 +           ++ +    D  ++  +L       +            G    
Sbjct: 307 VVNPFLDLVKGPGYQGGPILGMFNITDKQKVLDILNRREIKSLLPANAKEAKFVFGKPEK 366

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L      Q   ++   +SG              ++ VV +  D  G+R + E+T   
Sbjct: 367 DSELIALYALQGNRDNVPPLSGS--IDDARQDYNLANQVVVSMQMDAKGSRIWEEMTTKA 424

Query: 290 I--GKPLAVVLDGRVLTAPVINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
              G  +A+VLD  V +AP IN      G +QISG+FT+  A  LA +LRAG LP K  I
Sbjct: 425 YKEGSQIAIVLDNLVYSAPGINNGPIAGGSSQISGDFTVNEAIDLANVLRAGKLPAKATI 484

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           ++   VG  LG ++I  GT +    L L++++M   YGK GL AD ++ LN++L   +LS
Sbjct: 485 IQSDEVGPTLGQEAIDSGTMSFGIALALVLIWMFFYYGKAGLFADIAMLLNILLIFGVLS 544

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            +GA LTLP IAGIVL IG++VD+N+L+ ERIREE  K +    ++  GFS A S+I D+
Sbjct: 545 GIGAVLTLPGIAGIVLTIGMSVDANVLIFERIREELAKGKDQKSAIKDGFSNALSSILDA 604

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           NIT  +  ++LF FG G ++GFA T+ + I  S+FTAI I R ++ +             
Sbjct: 605 NITTGLTALILFVFGTGPIKGFATTLLIGIGTSLFTAIFITRLLVDWYANKGGKLDFSTG 664

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                F     I I F++ R     IS +  + S+  LFT+GL+ G+DF GG    V  +
Sbjct: 665 ITKNLFR---NINIAFLKKRKTAYIISAVLIVGSLASLFTNGLDEGVDFVGGRTYQVRFD 721

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +PV  S + + L    +   +     GE N L        D   +    EM +     + 
Sbjct: 722 QPVSASEITATLSDAAVFGSADAKTFGEDNQLKITTKHRIDEATEEADEEMRQTLFNALQ 781

Query: 647 PLSTIQNTEIV-----------------GPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688
           P     +                      P I+ ++ +     V+ S I + +YI  RF 
Sbjct: 782 PHLNGMDYAAFISNAEGKTAGLMKKYKVSPTIADDIKKASFWAVLGSLIVVFLYILFRFK 841

Query: 689 KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           +W F+LGA+  +  D+   LG F+L      F +E +   +AA+LT+IGYS+ND VVV+D
Sbjct: 842 RWQFSLGAVAAVFHDVLIVLGVFSLTYKFMPFSMEIDQAFIAAILTVIGYSLNDTVVVFD 901

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+    + T   F  +IDKS++ TL R++ TS+   + +L + ++GG  I  F   + 
Sbjct: 902 RIREFFNEH-TDWDFDRVIDKSLSSTLSRTLNTSLTTLVVLLAIFIFGGESIRGFMFALI 960

Query: 803 FGIVVAASSSIFIAAPILLF 822
            G++V   SS+FIA PI+  
Sbjct: 961 VGVIVGTYSSLFIATPIMYD 980



 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 126/362 (34%), Gaps = 7/362 (1%)

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            T ++   +    G G   G  + M           I   R +   +    K        
Sbjct: 304 TTTVVNPFLDLVKGPGYQGGPILGMFNITDKQKVLDILNRREIKSLLPANAKEAKFVFGK 363

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
             +   +    A+Q  R     +  SI  +     L     ++  +D KG      +  +
Sbjct: 364 PEKDSELIALYALQGNRDNVPPLSGSIDDARQDYNLANQVVVSMQMDAKGSRIWEEMTTK 423

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                   + +    +      N         ++      + A      +   K+     
Sbjct: 424 AYKEGSQIAIVLDNLVYSAPGINNGPIAGGSSQISGDFTVNEAIDLANVLRAGKLPAKAT 483

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I  ++ VGP + +E I  G +   I+   +LI+++  +     L A   ++L+I   
Sbjct: 484 ---IIQSDEVGPTLGQEAIDSGTMSFGIALALVLIWMFFYYG-KAGLFADIAMLLNILLI 539

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  +  G    L  +A ++  IG SV+  V++++R+R+ +         +  I    + 
Sbjct: 540 FGVLSGIGAVLTLPGIAGIVLTIGMSVDANVLIFERIREELA---KGKDQKSAIKDGFSN 596

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            L   +  ++   ++ L + V+G   I  FA  +  GI  +  ++IFI   ++ +  +  
Sbjct: 597 ALSSILDANITTGLTALILFVFGTGPIKGFATTLLIGIGTSLFTAIFITRLLVDWYANKG 656

Query: 828 AK 829
            K
Sbjct: 657 GK 658



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/181 (23%), Positives = 76/181 (41%), Gaps = 22/181 (12%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS-FLKKEGIGVFSMRQIQNKIT 99
           +N + LGLDL+GG   +L+V   D + G      D + +  L+       + +       
Sbjct: 83  ENSMKLGLDLKGGLEAILQVSVKDILKGLANNSKDPVFNKALEDADELQKNSQNDY---- 138

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN----NIDQV 155
                        +        +     +         + E EI +  S+      I + 
Sbjct: 139 ------------IEDFYTSFDAIKGDKKLSSPDIFATRSLEDEIRMDSSEEDVKRVITRK 186

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
           I  +I  +++++R RIDQ G++   IQR   S RIL++LPG +D  R + L+  TA++ F
Sbjct: 187 IDESINSALQVLRTRIDQFGVASPNIQRLGTSGRILVELPGVKDVERAKALITGTAQLEF 246

Query: 215 H 215
            
Sbjct: 247 W 247


>gi|325287196|ref|YP_004262986.1| protein-export membrane protein SecD [Cellulophaga lytica DSM 7489]
 gi|324322650|gb|ADY30115.1| protein-export membrane protein SecD [Cellulophaga lytica DSM 7489]
          Length = 999

 Score =  369 bits (946), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 191/809 (23%), Positives = 361/809 (44%), Gaps = 46/809 (5%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123
           ++  ++   + LR  +   G+   ++++     +I +    ++ K    + ++   Q   
Sbjct: 186 IDESVESAFEVLRERIDGFGVTQPNIQREGTSGRILVELPGAKDKARAQELLSSTAQLEF 245

Query: 124 SKLNVDPKKNLLVTTTEKEISI-----VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            +       N++         +       +    D       E    +     D + ++ 
Sbjct: 246 WETYPKNDPNVMQFINAANEKLRSLVDTKTATAEDTESKPESEIDSLLSDVTQDSLDVAS 305

Query: 179 -----STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF--MFGVR 231
                  + +   +   +     +D +++ + L              + K  +       
Sbjct: 306 QINPLGDLIKGIPNSFAVAEFAIKDTAKVNEYLNMPEIKRLIPNAIQHVKFAWERPSKGS 365

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
            +      +   ++  ++SG  ++ A A FD      V      +   +     +  N+ 
Sbjct: 366 EVVGLFALKGNRDNTPKMSGDVVSAARAQFDQFNRPAVGMDMNVKGAKQWQKFTSEVNLN 425

Query: 292 KPLAVVLDGRVLTAPV---INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           +    V+    +       +   I  G  +ISG+FTI     +A +LRAG LP + +I++
Sbjct: 426 QTGIAVVLDNRVYTAPGCSVVGGISGGSTEISGDFTITETKDIANVLRAGKLPARADIIQ 485

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
              VG  LG +SI  G  + +  + L++++MI  YGK G+ AD ++ LN++L   +L  L
Sbjct: 486 SEVVGPSLGHESINSGLMSFLIAMALVLVWMIFYYGKAGVAADIALLLNILLIFGVLVSL 545

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            A LTLP IAGIVL IG++VD+N+L+ ERI+EE  K +    ++  GF  A S+I D+NI
Sbjct: 546 DAVLTLPGIAGIVLTIGMSVDANVLIFERIKEELAKGKGQSLAISDGFGNALSSILDANI 605

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T  +  ++LF FG G ++GFA T+ + I  S+FTAI + R  +           +     
Sbjct: 606 TTGLTAIILFIFGSGPIKGFATTLLIGIATSLFTAIFVTRLFIE--GYTGAKGKVLEFCT 663

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                +   ++I F++ R      S    + ++  L T GL  G+DF GG    V  ++ 
Sbjct: 664 GLTRNLFKNLSINFLKKRKIAYIFSGALIVIALFSLLTTGLQQGVDFVGGRTYQVRFDQS 723

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG------DSVAQTRVLEMVKKKI 642
           V+ S + SNL  +     + + F  +   ++   Y+        D   Q ++   ++  +
Sbjct: 724 VNTSEISSNLTEIFGSGTNVKTFGEDNQIMITTSYKVDAEDIAVDEEIQEKLFTSLQNLL 783

Query: 643 TE------------IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
                               I  ++ VGP I+ ++ +  +  ++ S   + +YI  RF+ 
Sbjct: 784 PSGLTLEEFNNGGTEDVSIGILKSKKVGPTIADDIKKNAVWAILGSLFVVFLYILFRFRK 843

Query: 690 WYFALGAITTLILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           W F+LGA+  +  D+   LG F+L G      +E +   +AA+LT+IGYS+ND VVV+DR
Sbjct: 844 WQFSLGAVVAVFHDVLVVLGVFSLLGKVMPFNMEIDQAFIAAILTVIGYSLNDTVVVFDR 903

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           +R+ +K      S  D +  ++N TL R++ TS+   + +L + ++GG  +  F   M  
Sbjct: 904 IREIVKE--RGWSSGDNVGLALNSTLSRTLNTSLTTLVVLLAIFIFGGESLRGFMFAMII 961

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G++V   SS+FIA P++      R ++ +
Sbjct: 962 GVIVGTYSSLFIATPVMFDTLKKRIQSGK 990



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 88/191 (46%), Gaps = 11/191 (5%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
             K  ++ GLDL+GG ++ L++   D ++G      + +  FLK       + +      
Sbjct: 79  AKKKELNKGLDLKGGINVTLQIKIKDILSGLANNTKNPV--FLKSLEDADEASKSSDKTY 136

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
              F ++                  +  ++   K+L       + S    ++ I + I  
Sbjct: 137 VDLFFEAFDA--------NKGDTKLASPDIFFTKSLSEEIKTMDASDEEVKSIIRKKIDE 188

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           ++E + E++R+RID  G+++  IQR   S RIL++LPG +D +R ++LL +TA++ F + 
Sbjct: 189 SVESAFEVLRERIDGFGVTQPNIQREGTSGRILVELPGAKDKARAQELLSSTAQLEFWET 248

Query: 218 LPNNSKKGFMF 228
            P N      F
Sbjct: 249 YPKNDPNVMQF 259


>gi|120437081|ref|YP_862767.1| bifunctional preprotein translocase subunit SecD/SecF [Gramella
           forsetii KT0803]
 gi|117579231|emb|CAL67700.1| protein-export membrane protein SecD [Gramella forsetii KT0803]
          Length = 1000

 Score =  368 bits (944), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 196/809 (24%), Positives = 360/809 (44%), Gaps = 46/809 (5%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
           ++  +    + LR  + K G+   +++++ N  +I +    ++    + + +    Q   
Sbjct: 184 IDESITSAFEVLRKRIDKFGVTQPNIQRLGNSGRILVELPGAKDISRVKNLLQSTAQLEF 243

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQN---NIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             +  + +    +     ++  +       + ++  S A     EI     D    +E  
Sbjct: 244 WHVYKNNEIGNFLVQANNKLIEMKRSEGAASEEETDSTATSGDSEIDELLADAEDSTEVE 303

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK------------GFMF 228
                   +++    +  P      +  TAK+  +   P                 G   
Sbjct: 304 TGNNPLFDLIVSPGYQGGPVIANFKVQDTAKVMDYIQNPQIRSLLPSEMRYAKFVWGVPD 363

Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                      +     +  +SG  +  A   +D      V                 + 
Sbjct: 364 EDTETAGLYALKGNRNMEPPLSGSVITDAQQTYDQLGRIAVSMQMDGTGAKIWEDMTGKA 423

Query: 289 NIGKPLAVVLDGRVLTAPVIN--QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
           +  +    ++   ++ +       AI  G+++ISG+F+I     LA +LRAG LP   +I
Sbjct: 424 SNEQSQIAIVLDNIVYSAPGVSTGAISGGRSEISGDFSITEGQDLANVLRAGKLPASADI 483

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           ++   VG  LG ++I  G  +    L+L++++MI+ YGK GL AD ++ +N++    +L+
Sbjct: 484 IQSEVVGPSLGQEAIDSGINSFGIALILVLIWMILYYGKAGLFADVALVVNILFIFGILA 543

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            LGA LTLP IAGIVL IG++VD+N+L+ ERI+EE  K +    ++  GF+ A S+I D+
Sbjct: 544 GLGAVLTLPGIAGIVLTIGMSVDANVLIFERIKEELAKGKVQKDAIKDGFNNALSSILDA 603

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           NIT  +  ++LF  G G ++GFA T+ + I  S+FTAI I R  +       K      +
Sbjct: 604 NITTGLTGLILFLLGTGPIKGFATTLLIGIATSLFTAIFITRLFIDGYGIKGKSLDFTTS 663

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                F       I F++ R     +S LF + S+  L T GLN G+DF GG    V   
Sbjct: 664 LTKNLFTNM---NIDFLKKRKVAYVVSGLFIVISVGSLLTQGLNEGVDFVGGRTYTVRFA 720

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V+ + V+++L +      +       +      + V  +    D   Q  + E +   
Sbjct: 721 NDVNPTEVQNDLVATFGSAEAKTFGPDNQLKITTKYKVDEEGAEVDEEIQKSLYESLNSY 780

Query: 642 IT-----------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
           +            +      +  +  VG  I+ ++       V+ S I + +YI +RF+ 
Sbjct: 781 LPADITYEEFIDGDDDKQVGVMKSMKVGATIADDIKNASFWAVLGSLIVVFLYILLRFRK 840

Query: 690 WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           W F+LGA+T +  D+   LG F+L      F +E +   +AA+LT+IGYS+ND VVV+DR
Sbjct: 841 WQFSLGAVTAVFHDVLVVLGIFSLLYKVMPFNMEIDQAFIAAILTVIGYSLNDTVVVFDR 900

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           +R+ +  + TS      ++ ++N T+ R++ TS+   + +L + ++GG  I  F   +  
Sbjct: 901 IREYVNEH-TSWPLGKTVNAALNSTISRTLNTSLTTLVVLLAIFIFGGESIRGFMFALIV 959

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G++V   SS+FIA P++      ++   +
Sbjct: 960 GVIVGTYSSLFIATPVMFDSVKKKSSIQK 988



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/195 (24%), Positives = 88/195 (45%), Gaps = 17/195 (8%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQNK 97
                ++ GLDL+GG +++L++   D ++G      D   R  + +        ++    
Sbjct: 79  AKDKELNKGLDLKGGINVILQISVRDILSGLANDTRDPAFRKAIAEADEAQTDSQENYID 138

Query: 98  ITLS-FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +    F +    +  +  V       N  L+ +   N+     E  I          + I
Sbjct: 139 LFFESFNNIPDAKLASPDV-----FANKTLSDEVNFNMSNEEVEPVIR---------KKI 184

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
             +I  + E++R+RID+ G+++  IQR   S RIL++LPG +D SR++ LL +TA++ F 
Sbjct: 185 DESITSAFEVLRKRIDKFGVTQPNIQRLGNSGRILVELPGAKDISRVKNLLQSTAQLEFW 244

Query: 216 KVLPNNSKKGFMFGV 230
            V  NN    F+   
Sbjct: 245 HVYKNNEIGNFLVQA 259


>gi|86141199|ref|ZP_01059745.1| putative protein-export transmembrane SecDF protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85831758|gb|EAQ50213.1| putative protein-export transmembrane SecDF protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 1004

 Score =  367 bits (942), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 209/816 (25%), Positives = 368/816 (45%), Gaps = 49/816 (6%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKV 115
           +E      V   +    + LR+ + K G+   ++++   Q++I +    +   E +  ++
Sbjct: 177 VEPILAKEVEESINSAFEVLRNRIDKFGVTQPNIQRLDNQSRILIELPGATDIERVKFQL 236

Query: 116 TLFLQGVN---------SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
               Q            +   +     L       E    +++ +  +    +IE+ +  
Sbjct: 237 ESTAQLEFYKTHYASEVAPYLLQVNAELKELVAPAEEEEAVAEVDSSESTDDSIEELLAS 296

Query: 167 IRQRIDQIGISESTIQR--------LGSHRILIQLPGEQDPSRLRQLLGTT--AKMSFHK 216
               I     +    +           +   ++     +D + + +       A++    
Sbjct: 297 EEDSISPAQANNPLFEVFSFNPAIQQYAQAPVVGYAQVKDTATINRYFAMPEIARLRPQG 356

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV-VDISFD 275
           +     + G   G   +      Q        + G  +  +   +       V +D    
Sbjct: 357 LRFAKFRWGITEGETDVVPLYALQSDRSGSPAMDGDVVQDSRQQYTQAGQPSVGIDFEGQ 416

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
             G            G  +A+VLDG V +A      I  G  +ISG+FT+  A  LA +L
Sbjct: 417 GPGQWAKLTGEVATEGNTIAIVLDGTVYSAASAKAEIKGGATEISGSFTVTEAQDLANVL 476

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           +AG LP    I+    VG  LG ++I  G  + V  LVL++++M+  YGK GL AD ++ 
Sbjct: 477 KAGKLPASAKIISYDVVGPSLGQEAINSGLMSFVIALVLVLIWMVFYYGKAGLFADVALA 536

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           +N++    +L+ LGA LTLP IAGIVL IG++VD+N+L+ ERI+EE  K +S   ++  G
Sbjct: 537 VNILFIFGVLAGLGAVLTLPGIAGIVLTIGMSVDANVLIFERIKEEIAKGKSQKDAIKDG 596

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           FS A S+I D+NIT  +  ++LF FG G ++GFA T+ + I  S+FTAI + R  +    
Sbjct: 597 FSNALSSILDANITTFLTALILFLFGTGPIQGFATTLMIGIGTSLFTAIFVTRLFIDGYG 656

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
           +  K              +       F+  R     IS +  + S+  LFT+GL+ G+DF
Sbjct: 657 KNGKSLQFSTGATRN---LFTNFNRDFLAKRKIAYIISGVLIVVSLISLFTNGLDQGVDF 713

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVA 630
            GG    V    PV+ + V   L +      +    +  +      + +  +    D   
Sbjct: 714 VGGRNYTVRFENPVNATEVEQKLIAELESAQAKTYGEANQLKITTKYRIDEEASEVDDDI 773

Query: 631 QTRVLEMVKKKITEIVPLSTIQN------------TEIVGPKISRELIRKGIVGVIISAI 678
           Q ++   ++  +   +  +                   VGP I+ ++ +     V+ S +
Sbjct: 774 QQKLFTALQSYLPSDLTFTQFVKGGSTEDKVGILEYNKVGPTIADDIKKDSFWAVLGSLV 833

Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIG 731
            + +YI +RF+ W F+LGA+  +  D+   LG F+L      F +E + + +AA+LT+IG
Sbjct: 834 VVFLYILLRFRRWQFSLGAVAAVFHDVLIVLGIFSLTYQFMPFNMEIDQSFIAAILTVIG 893

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           YS+ND VVV+DR+R+ MK Y TS     +I+++IN T+ R++ TSM   I +L + ++GG
Sbjct: 894 YSLNDTVVVFDRIREFMKEYGTSRKMGLIINQAINSTISRTLNTSMTTLIVLLAIFIFGG 953

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + I  F   +  G++V   SSIFIA P++      +
Sbjct: 954 ASIMGFMFALIVGVLVGTYSSIFIATPVMFDTIQKK 989



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 56/297 (18%), Positives = 106/297 (35%), Gaps = 21/297 (7%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
             +  ++ GLDL+GG + +LE+   D + G     +D   +          + +  QN  
Sbjct: 79  AKEKELNKGLDLKGGMNAILEISVADILRGLSNDSTDPAFNQ--ALDQAAEAQKDSQNSF 136

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
              F D+       +K+       N+ L      N+     E  +          + +  
Sbjct: 137 LEDFFDAFEAIPGDNKLASPDIFANTTLGEKVNFNMTNDEVEPIL---------AKEVEE 187

Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           +I  + E++R RID+ G+++  IQR     RILI+LPG  D  R++  L +TA++ F+K 
Sbjct: 188 SINSAFEVLRNRIDKFGVTQPNIQRLDNQSRILIELPGATDIERVKFQLESTAQLEFYKT 247

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                     +              +++ V  +      A  +    T   + ++   E 
Sbjct: 248 H---------YASEVAPYLLQVNAELKELVAPAEEEEAVAEVDSSESTDDSIEELLASEE 298

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
            +    +                +   APV+  A     A I+  F +     L   
Sbjct: 299 DSISPAQANNPLFEVFSFNPAIQQYAQAPVVGYAQVKDTATINRYFAMPEIARLRPQ 355


>gi|86132653|ref|ZP_01051246.1| protein-export membrane protein SecD [Dokdonia donghaensis MED134]
 gi|85816895|gb|EAQ38080.1| protein-export membrane protein SecD [Dokdonia donghaensis MED134]
          Length = 992

 Score =  366 bits (938), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 198/806 (24%), Positives = 357/806 (44%), Gaps = 53/806 (6%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQ 120
           +  +   +    + LR+ + K G+   +++ + +  +I +    ++  + +   +    Q
Sbjct: 176 EGEIKETIGSAFETLRNRIDKFGVTQPNIQSLGDNGRILVELPGAKDIDRVRGLLEKTAQ 235

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               + +   +   ++         + +     +    A+ Q   +     D +   +  
Sbjct: 236 LEFYQTHYAGE---VLNYLVGANETLRTLVAASEKKEAAVAQDSTLDDNVSDLLKDVDEE 292

Query: 181 IQRLGSHRILIQLPG-----------------EQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
            +      +                        +D + +   L   A +         +K
Sbjct: 293 EEEQDFGPLFKVFSPNQQAVQMSSIPTVGFAAVKDTATINSYLRNPAVIKQRPASLRYAK 352

Query: 224 KGF--MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281
             +        +      +   +    + G  +N +   F     +P V + F+  G  +
Sbjct: 353 FAWGVPEEGADIVGLYALESNRQGAPYMDGDVVNDSRQQFTQTQ-QPSVGLDFEGQGVNQ 411

Query: 282 FFEVTRDNI--GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
           + ++TR+    G  +A+ LDG V +A    Q I  G  +ISGNFT+ +A  LA +L AG 
Sbjct: 412 WAKLTREVAQKGNAIAIALDGNVYSAATARQEIKGGSTEISGNFTVASAQDLATVLNAGK 471

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           LP    I++   +G  LG ++I  G  + +  L L++++M+  YGK G  AD ++ +N++
Sbjct: 472 LPASAKIIQAEEIGPSLGQEAINSGILSFLIALSLVLIWMVFYYGKAGGFADIALVVNIL 531

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
               +L+ LGA LTLP IAGIVL IG++VD+N+L+ ERI+EE RK +S   ++  GF+ A
Sbjct: 532 FIFGVLAGLGAVLTLPGIAGIVLTIGMSVDANVLIFERIKEEIRKGKSQKDAIKDGFNNA 591

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            S+I D+NIT  +  ++LF FG G V+GFA T+ + I  S+F AI I R  +    +  K
Sbjct: 592 LSSILDANITTFLTALILFLFGTGPVQGFATTLMIGIATSLFCAIFITRLFIDGYGKNGK 651

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                         +     + F+  R     IS +  +  +  L T GL+ GIDF GG 
Sbjct: 652 SLEFATGMTKN---LFVNNNVDFLGKRKIAYAISGVLIVGGLAALLTGGLDAGIDFVGGR 708

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV- 638
              V  ++P++   V   L +              +  +                +E   
Sbjct: 709 TYTVRFDQPMNAQEVEDALVADFGSADVKTFGADNQLKITTKYRIDETGTDIDAQVEQQL 768

Query: 639 ---------------KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
                              +            +VGP I+ ++ +  +  VI S I + +Y
Sbjct: 769 FTSLTPFLPSGMSYAAFAKSTDDKQVGKMEYYMVGPTIADDIKKGALFAVIGSLIVVFLY 828

Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALF------GIEFNLTAVAAVLTLIGYSVND 736
           I +RF+ W F+LGA+  +  D+   LG FA+F       +E +   +AA+LT+IGYS+ND
Sbjct: 829 ILLRFRRWQFSLGAVAAVFHDVLLVLGVFAIFKNIMPFDMEVDQNFIAAILTVIGYSLND 888

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
            VVV+DR+R+ +K + ++  F  LI++++N TL R++ TS+   I +L +   G   I  
Sbjct: 889 TVVVFDRIREYIKEHGSTRGFGKLINQALNSTLSRTLNTSVTTLIVLLAIFFLGAPSIRG 948

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLF 822
               +  G++V   SS+FIA P++  
Sbjct: 949 LMFALIVGVIVGTYSSLFIATPVMFD 974



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 14/180 (7%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
             +  ++ GLDL+GG +++L++   D + G     +D   +F+        + +  QN  
Sbjct: 75  AKEKELNKGLDLKGGINVILQISIRDILGGLSNNSTDP--AFIAALDATDEAQKDSQNTY 132

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
              F     K           QG            +L       +S       ++  I  
Sbjct: 133 FEDFVTEFEK-----------QGGQLASPDIFANVVLEDKVNTGMSNSEVATVLEGEIKE 181

Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            I  + E +R RID+ G+++  IQ    + RIL++LPG +D  R+R LL  TA++ F++ 
Sbjct: 182 TIGSAFETLRNRIDKFGVTQPNIQSLGDNGRILVELPGAKDIDRVRGLLEKTAQLEFYQT 241


>gi|298208318|ref|YP_003716497.1| putative protein-export transmembrane SecDF protein [Croceibacter
           atlanticus HTCC2559]
 gi|83848239|gb|EAP86109.1| putative protein-export transmembrane SecDF protein [Croceibacter
           atlanticus HTCC2559]
          Length = 1001

 Score =  365 bits (936), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 189/815 (23%), Positives = 355/815 (43%), Gaps = 52/815 (6%)

Query: 60  VDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIAD 113
            +    +   +        + LR  + K G+   +++++    +I +    ++  + I  
Sbjct: 174 AEVATVLKKKIDESIVSAFEVLRKRIDKFGVTQPNIQRLGESGRILVELPGAKDVDRIRT 233

Query: 114 KVTLFLQGVNSKLNVDPK--------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
            +    Q       V              +  T      I  ++   D   + A +   +
Sbjct: 234 LLQSTAQLEFWDGLVGSNFGQFLVDADAYIKETQSTSTEIENAEQVTDSTETAAGDDLED 293

Query: 166 IIRQRIDQIGISESTIQ-------RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
           ++ +  D   ++                   +I +   +D +++   L      +     
Sbjct: 294 LLAEENDSTEVASGNNPLLELIVAPGYQGGPVIAVFNAKDTAKVNSYLKKPQVKALLPAE 353

Query: 219 PNNSKKGFMFGVRFLRDS-DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
              +K  +              +   +++ E+SG  +  A   ++      V      + 
Sbjct: 354 QKYTKFLWGIEDENGLVQLYAVKGNRDNEPELSGGVVTDAAQVYNQAGQVAVSMQMNGKG 413

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAML 335
                    R    +    ++   V+ +     + AI  G+ +ISG+FT+     LA +L
Sbjct: 414 AKIWEEMTGRAYQQQSTIAIVLDDVVYSAPSSTSGAISGGRTEISGSFTVAEGQDLANVL 473

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           RAG LP   +I++   VG  LG ++I  G  + V  L+ ++++MI  YG+ G  AD ++ 
Sbjct: 474 RAGKLPASADIIQSEVVGPSLGQEAIDSGLMSFVIALLFVLVWMIFYYGRAGAYADVALV 533

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           +N++    +L+ LGA LTLP IAGIVL IG++VD+N+L+ ERIREE  K +S   S+  G
Sbjct: 534 VNILFIFGILAGLGAVLTLPGIAGIVLTIGISVDANVLIFERIREELAKGKSQKDSIKDG 593

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           F+ A S+I D+NIT  +  ++L  FG G ++GFA T+ + I  S+FTAI I R  +    
Sbjct: 594 FNNALSSILDANITTGLTGLILLVFGTGPIKGFATTLLIGIATSLFTAIFITRLFIDGYG 653

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
           +  K  +               + + F++ R     IS       +  LFT GL+ G+DF
Sbjct: 654 KNGKSLAFSTPITK---KWFQNVNVNFLKKRKIAYVISAAIIAVGLGSLFTQGLDQGVDF 710

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRV 634
            GG    V  ++ VD + +  +L +      +       +     + + +   +     +
Sbjct: 711 VGGRTYTVRFDKDVDANEIEQDLIATFESAEAKTLGANNQLKITTKYKVEETSTEVDNEI 770

Query: 635 LEMVKKKITEIVPLSTIQ---------------NTEIVGPKISRELIRKGIVGVIISAIA 679
            EM+   + + +P                    +   V P I+ ++ +  +  V+ S + 
Sbjct: 771 QEMLYNSLKQNLPQGMTYEDFKQESSDKEAGLMSNYKVSPTIADDIKQASVWAVLGSLLV 830

Query: 680 MLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGY 732
           + +YI +RF +W F+LGA+  +  D+   LG F+L      F +E +   +AA+LT+IGY
Sbjct: 831 VFLYILLRFRRWQFSLGAVAAVFHDVLIVLGIFSLTYKFMPFNMEIDQAFIAAILTVIGY 890

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           S+ND VVV+DR+R+             +I+ +++ TL R++ TS+   I +L + ++  +
Sbjct: 891 SLNDTVVVFDRIREYFNENEQ-WPMSKIINSALSSTLSRTLNTSLTTLIVLLAIFIF-AA 948

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  F   +  G+VV   SS+FIA P++      R
Sbjct: 949 PLRGFMFSLIIGVVVGTYSSLFIATPVMFDTVKKR 983



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 84/180 (46%), Gaps = 8/180 (4%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            +E+VGP + +E I  G++  +I+ + +L+++   +       A   L+++I    G  A
Sbjct: 486 QSEVVGPSLGQEAIDSGLMSFVIALLFVLVWMIFYYG-RAGAYADVALVVNILFIFGILA 544

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G    L  +A ++  IG SV+  V++++R+R+ +       S +D I    N  L   
Sbjct: 545 GLGAVLTLPGIAGIVLTIGISVDANVLIFERIREELA---KGKSQKDSIKDGFNNALSSI 601

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   ++ L + V+G   I  FA  +  GI     +S+F A  I     D   KN +
Sbjct: 602 LDANITTGLTGLILLVFGTGPIKGFATTLLIGIA----TSLFTAIFITRLFIDGYGKNGK 657



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 64/347 (18%), Positives = 116/347 (33%), Gaps = 26/347 (7%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              ++ GLDL+GG +++L+V   D + G      D   +                    L
Sbjct: 81  DKELNKGLDLKGGINVILQVSVKDILRGLSNNSKDPAFNQ------------------AL 122

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL------SQNNIDQ 154
           + AD   K+   D + LFL+  N   +       +         I            + +
Sbjct: 123 ANADEAQKDAQDDYIDLFLEAFNDIPDARLASPDIFANKTLSDEINFEMSNAEVATVLKK 182

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
            I  +I  + E++R+RID+ G+++  IQR   S RIL++LPG +D  R+R LL +TA++ 
Sbjct: 183 KIDESIVSAFEVLRKRIDKFGVTQPNIQRLGESGRILVELPGAKDVDRIRTLLQSTAQLE 242

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           F   L  ++   F+           +     +  E        A  +          D +
Sbjct: 243 FWDGLVGSNFGQFLVDADAYIKETQSTSTEIENAEQVTDSTETAAGDDLEDLLAEENDST 302

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA- 332
               G     E+      +   V+          +N  +   + +       +    L  
Sbjct: 303 EVASGNNPLLELIVAPGYQGGPVIAVFNAKDTAKVNSYLKKPQVKALLPAEQKYTKFLWG 362

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
                G + +        N     G            AG V + + M
Sbjct: 363 IEDENGLVQLYAVKGNRDNEPELSGGVVTDAAQVYNQAGQVAVSMQM 409


>gi|332292566|ref|YP_004431175.1| protein-export membrane protein SecD [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332170652|gb|AEE19907.1| protein-export membrane protein SecD [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 993

 Score =  363 bits (930), Expect = 9e-98,   Method: Composition-based stats.
 Identities = 201/803 (25%), Positives = 356/803 (44%), Gaps = 46/803 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQ 120
           +  +   +    + LR+ + K G+   +++ + +  +I +    ++  + +   +    Q
Sbjct: 176 EAEIKETIGSAFETLRNRIDKFGVTQPNIQSLGDNGRILVELPGAKDIDRVRGLLEKTAQ 235

Query: 121 GVNSKL------------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME--I 166
               +               +  + L+ +  EK+ + V   + +D  +S  ++ + E   
Sbjct: 236 LEFYQTHYAGDALNYLIGANETLRGLVASNEEKQEAAVAQDSTLDDNVSDLLKDADEEEA 295

Query: 167 IRQRIDQIGISESTIQ-RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
            +       I     Q    S    +     +D + +   L   + +         +K  
Sbjct: 296 EQDFGPLFKIFSPNQQAVQNSTIPTVGFAAVKDTATINSYLRNPSVVKQRPASLRYAKFA 355

Query: 226 F--MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV-VDISFDEMGARRF 282
           +        +      +   +    + G  +N +   F       V +D     +     
Sbjct: 356 WGVPEEGADIVALYALESNRQGAPYMDGDVVNDSRQQFTQTQQPAVGLDFEGQGVNQWAK 415

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
                   G  +A+ LDG V +A    Q I  G  +ISGNFT+  A  LA +L AG LP 
Sbjct: 416 MTREVAQKGNAIAIALDGNVYSAASARQEIKGGATEISGNFTVAAAQDLATVLNAGRLPA 475

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
              I++   +G  LG ++I  G  + +  L L++++M+  YGK G  AD ++ +N++   
Sbjct: 476 SAKIIQAEEIGPSLGKEAIDSGILSFLIALALVLVWMVFYYGKAGGFADIALVVNILFIF 535

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            +L+ LGA LTLP IAGIVL IG++VD+N+L+ ERI+EE RK +S   ++  GF+ A S+
Sbjct: 536 GVLAGLGAVLTLPGIAGIVLTIGMSVDANVLIFERIKEELRKGKSQKDAIKDGFNNALSS 595

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           I D+NIT  +  ++LF FG G V+GFA T+ + I  S+F AI I R  +    +  K   
Sbjct: 596 ILDANITTFLTALILFLFGTGPVQGFATTLMIGIATSLFCAIFITRLFIDGYGKNGKSLE 655

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +       +    +I F+  R     IS +  +  +  L T GL+ GIDF GG    
Sbjct: 656 FATSMTKG---LFVNNSIDFLGKRKIAYAISGVLIVGGLAALLTGGLDTGIDFVGGRTYT 712

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV---- 638
           V  ++P++   V   L +              +  +                +E      
Sbjct: 713 VRFDQPMNAQEVEDALVADFGSADVKTFGADNQLKITTKYRIDETGTDIDAQVEQQLFTS 772

Query: 639 ------------KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                           +            +VGP I+ ++ +  +  VI S I + +YI +
Sbjct: 773 LTPYLPTGMTYAAFAKSTDDKQVGKMEYYMVGPTIADDIKKGALFAVIGSLIVVFLYILL 832

Query: 687 RFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVV 739
           RF+ W F+LGA+  +  D+   LG FA+      F +E +   +AA+LT+IGYS+ND VV
Sbjct: 833 RFRRWQFSLGAVAAVFHDVLLVLGVFAVLKNIMPFDMEVDQNFIAAILTVIGYSLNDTVV 892

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           V+DR+R+ +K + ++  F  LI++++N TL R++ TS+   I +L +   G   I     
Sbjct: 893 VFDRIREYIKEHGSTRGFGKLINQALNSTLSRTLNTSVTTLIVLLAIFFLGAPSIRGLMF 952

Query: 800 PMAFGIVVAASSSIFIAAPILLF 822
            +  G++V   SS+FIA P++  
Sbjct: 953 ALIVGVIVGTYSSLFIATPVMFD 975



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 108/315 (34%), Gaps = 14/315 (4%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
             +  ++ GLDL+GG +++L++   D + G     +D   +F+        + +  QN  
Sbjct: 75  AKEKELNKGLDLKGGINVILQISIRDILGGLSNNSTDP--AFIAALDATDEAQKDSQNTY 132

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
              F  +              QG            +L    +  +S     + ++  I  
Sbjct: 133 FEDFVSAFE-----------AQGGQLASPDIFANVILNEKVDTGMSNTEVASVLEAEIKE 181

Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            I  + E +R RID+ G+++  IQ    + RIL++LPG +D  R+R LL  TA++ F++ 
Sbjct: 182 TIGSAFETLRNRIDKFGVTQPNIQSLGDNGRILVELPGAKDIDRVRGLLEKTAQLEFYQT 241

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                   ++ G              + +  ++         +   K             
Sbjct: 242 HYAGDALNYLIGANETLRGLVASNEEKQEAAVAQDSTLDDNVSDLLKDADEEEAEQDFGP 301

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
             + F    +      +  V    V     IN  + +         ++  A     +   
Sbjct: 302 LFKIFSPNQQAVQNSTIPTVGFAAVKDTATINSYLRNPSVVKQRPASLRYAKFAWGVPEE 361

Query: 338 GSLPIKLNIVEERNV 352
           G+  + L  +E    
Sbjct: 362 GADIVALYALESNRQ 376


>gi|319952078|ref|YP_004163345.1| protein translocase subunit secf;protein translocase subunit secd
           [Cellulophaga algicola DSM 14237]
 gi|319420738|gb|ADV47847.1| protein translocase subunit secF;protein translocase subunit secD
           [Cellulophaga algicola DSM 14237]
          Length = 992

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 205/802 (25%), Positives = 365/802 (45%), Gaps = 44/802 (5%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
           ++  +    + LR  +   G+   ++++  +  +I +    +R      + ++   Q   
Sbjct: 185 IDESIISAFEVLRERIDGFGVTQPNIQREGSSGRILVELPGARDIARAQELLSSTAQLEF 244

Query: 124 SKLNVDPKKNLLVTTTEKEISI-----VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            +      +NL          +     V     + +  S       ++ +  ID      
Sbjct: 245 WETYRPDNQNLSQFLFAANERLKTLVEVEVPETVSKPESEIDSLLSDVAQDSIDFASEVN 304

Query: 179 STIQ---RLGSHRILIQLPGEQDPSRLRQLLGTTA--KMSFHKVLPNNSKKGFMFGVRFL 233
             I                  +D +++   L      ++   ++               +
Sbjct: 305 PLISLLIPGEPGAQSFVRASTKDTAQISAYLKMPEIRRLVPKELQFVKFLWERPTEGAEI 364

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI-GK 292
                 Q        ISG  ++ A  +FDP++   V                +  N+ G 
Sbjct: 365 VGLYALQSNRAATPRISGDVVSDARDDFDPRSRPAVTMSMNTRGAKEWQKLTSDANLNGT 424

Query: 293 PLAVVLDGRVLTAPVINQA--IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
            +A+VLD +V TAP ++Q   I  G+++I+G+FTI     +A +LRAG LP K  IV+  
Sbjct: 425 GIAIVLDNKVYTAPGVSQVGGISGGRSEITGSFTINETKDIANVLRAGKLPAKAEIVQSE 484

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG  LG ++I  G  +    +V ++++MI  YG+ G  AD ++  N++L   +L+ + A
Sbjct: 485 IVGPSLGQEAIDSGFNSFAIAMVFVLVWMIFYYGRAGAFADVALLFNILLIFGVLTSIKA 544

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
            LTLP IAGIVL IG++VD+N+L+ ERI+EE  K +    ++  GFS A S+I D+NIT 
Sbjct: 545 VLTLPGIAGIVLTIGMSVDANVLIFERIKEEIAKGKGKSLAIADGFSNALSSILDANITT 604

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +  V+LF FG G ++GFA T+ + IL S+FTAI I R ++ + +  K  K         
Sbjct: 605 GLTAVILFVFGSGPIKGFATTLIIGILTSLFTAIFITRLLIGWYLSAKDRK--LEFSTGL 662

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPV 589
              +   + I F+  R +    S +  +  +  LF       G+DF GG    V   +PV
Sbjct: 663 TKNLFKNVHINFLSKRKYAYIFSTVLIVIGLYSLFFGPGLQQGVDFLGGRSYQVRFEQPV 722

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ------PGDSVAQTRVLEMVKKKIT 643
           + S + + L ++     + + +  +   ++   Y+        D+  Q ++   ++K   
Sbjct: 723 NPSEMSTELNAVFGTGTNVKTYGEDNQVMITTAYKVAVEGIEVDTEIQNKLFTTLQKYFP 782

Query: 644 E-----------IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
           +                 I +++ VGP I+ ++       +I S   + +YI  RF+ W 
Sbjct: 783 DGTSFSDFSVANDDKAIGIMSSKKVGPTIADDIKSNAFWAIIGSLAVVFLYILFRFRKWQ 842

Query: 692 FALGAITTLILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           F+LGA+  +  D+   LG F++FG      +E +   +AA+LT+IGYS+ND VVV+DR+R
Sbjct: 843 FSLGAVAAVFHDVLIVLGIFSIFGKIMPFNMEIDQAFIAAILTVIGYSLNDTVVVFDRIR 902

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           + +       S  +  + ++N TLGR++ TS+   I +L +  +GG  +  F   M  G+
Sbjct: 903 EIVAE--RGWSAGENTNLALNSTLGRTLNTSLTTVIVLLAIFAFGGDSLRGFMFAMIIGV 960

Query: 806 VVAASSSIFIAAPILLFIYDWR 827
           VV   SS+FIA P++       
Sbjct: 961 VVGTYSSLFIATPVMFDTLKKS 982



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/373 (14%), Positives = 120/373 (32%), Gaps = 10/373 (2%)

Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           A  +I  ++    + ++++    G      A T   + + +      I R +   +   K
Sbjct: 293 AQDSIDFASEVNPLISLLIPGEPGAQSFVRASTKDTAQISAYLKMPEIRRLVPKELQFVK 352

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            +            L                V                         K  
Sbjct: 353 FLWERPTEGAEIVGLYALQSNRAATPRISGDVVSDARDDFDPRSRPAVTMSMNTRGAKEW 412

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
            +L   AN       +  + +      +S           +   +   ++     VL   
Sbjct: 413 QKLTSDANLNGTGIAIVLDNKVYTAPGVSQVGGISGGRSEITGSFTINETKDIANVLRA- 471

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
                ++   + I  +EIVGP + +E I  G     I+ + +L+++   +       A  
Sbjct: 472 ----GKLPAKAEIVQSEIVGPSLGQEAIDSGFNSFAIAMVFVLVWMIFYYG-RAGAFADV 526

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L+ +I    G          L  +A ++  IG SV+  V++++R+++ +          
Sbjct: 527 ALLFNILLIFGVLTSIKAVLTLPGIAGIVLTIGMSVDANVLIFERIKEEIA---KGKGKS 583

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             I    +  L   +  ++   ++ + + V+G   I  FA  +  GI+ +  ++IFI   
Sbjct: 584 LAIADGFSNALSSILDANITTGLTAVILFVFGSGPIKGFATTLIIGILTSLFTAIFITR- 642

Query: 819 ILLFIYDWRAKNA 831
           +L+  Y       
Sbjct: 643 LLIGWYLSAKDRK 655



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/185 (21%), Positives = 83/185 (44%), Gaps = 20/185 (10%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
             K  ++ GLDL+GG ++ L++   D + G     S+    F +       + +   +  
Sbjct: 79  AKKKELNKGLDLKGGINVTLQISVKDILKGLANNTSNA--KFNEALANADAASKNSSDTY 136

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
                         D      + +     +   +     +    I+  ++ + +  +I  
Sbjct: 137 I-------------DLFFQAFENLKGDTKLASPEVFANKSLSDVINFQMTDDQVKPIIRT 183

Query: 159 AIEQSM----EIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
            I++S+    E++R+RID  G+++  IQR   S RIL++LPG +D +R ++LL +TA++ 
Sbjct: 184 KIDESIISAFEVLRERIDGFGVTQPNIQREGSSGRILVELPGARDIARAQELLSSTAQLE 243

Query: 214 FHKVL 218
           F +  
Sbjct: 244 FWETY 248


>gi|305664994|ref|YP_003861281.1| putative protein-export transmembrane SecDF protein [Maribacter sp.
           HTCC2170]
 gi|88707406|gb|EAQ99651.1| putative protein-export transmembrane SecDF protein [Maribacter sp.
           HTCC2170]
          Length = 990

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 191/808 (23%), Positives = 353/808 (43%), Gaps = 45/808 (5%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
           ++  +    + LR  +   G+   ++++  N  +I +    +R      + ++   Q   
Sbjct: 185 IDESIVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGARDIARAQELLSSTAQLEF 244

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS--MEIIRQRIDQIGISESTI 181
            +       +           +       D +     E+S    ++    D + ++    
Sbjct: 245 WETYEQNNPSFGSFIVAANERLKSIVKTDDAIEEPVKEESELDSLLSDATDSLDLASQVN 304

Query: 182 Q------RLGSHRILIQLPGEQDPSRLRQLLGTTA---KMSFHKVLPNNSKKGFMFGVRF 232
                          +     +D + +   L        +           +        
Sbjct: 305 PLYDILLPANPGTNAMFRAAIKDTATVGAYLRMPEIQRLLPADIQFTKFLWERPSADNVE 364

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
           + D    +        I+G  ++ A   +D  +   V                +  N+  
Sbjct: 365 VLDLYALKSNRSSTPRIAGDVVSDARDTYDQFSKPAVSMSMNSRGAKEWQKLTSDANVNN 424

Query: 293 PLAVVLDGRVLTAPV---INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
               V+    +       +   I  G  +I+G+FT++    +A +LRAG LP K  I++ 
Sbjct: 425 TGIAVVLDNKVYTAPGCSVVGGISGGGTEITGSFTVDETKDIANVLRAGKLPAKAEIIQS 484

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
             VG  LG ++I  G  + +  + +++++M+  YGK G+ AD ++ LN++L   +L+ L 
Sbjct: 485 NVVGPSLGQEAIDSGFMSFLIAMAIVLVWMVFYYGKAGIFADIALLLNILLIFGVLTSLS 544

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           A LTLP IAGIVL IG++VD+N+L+ ERI+EE  K +    ++  GF  A S+I D+NIT
Sbjct: 545 AVLTLPGIAGIVLTIGMSVDANVLIFERIKEELAKGKGKSQAVSDGFGNALSSILDANIT 604

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             +  ++LF FG G ++GFA T+ + IL S+FTAI I R ++       K +++D +   
Sbjct: 605 TGLTALILFLFGSGPIKGFATTLLIGILTSLFTAIFITRLLVD-WYLSGKGRTLDFSTPL 663

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRP 588
              L    I+I F+  R     IS +     +  LF       G+DF GG    V   + 
Sbjct: 664 TKNL-FKNISINFLSKRKIAYVISFILVGIGLFSLFFGPGLQQGVDFIGGRSYQVRFEKE 722

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ------PGDSVAQTRVLEMVKKKI 642
           V  S + S L ++     + + +       +   Y+        D+  Q ++   ++K +
Sbjct: 723 VSASEIASELNTVFGSGTNVKIYGENNQIKITTPYKVDVEGVEVDNEIQDKLYTSLQKYL 782

Query: 643 TE-----------IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
            +                 I  +  VGP I+ ++     + +I S   + +YI +RF+ W
Sbjct: 783 PDGTTKANFIVGSDDRAIGIMQSVKVGPTIADDIKNNAFLAIIGSLAVVFLYILLRFRKW 842

Query: 691 YFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            F+LGA+T +  D+   LG F++      F +E +   +AA+LT+IGYS+ND VVV+DR+
Sbjct: 843 QFSLGAVTAVFHDVLIVLGIFSITGKIMPFNMEIDQAFIAAILTVIGYSLNDTVVVFDRI 902

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+   +        D I+ ++N TLGR++ TS+   + +L + ++GG  +  F   M  G
Sbjct: 903 RE--IVGERGWKGGDNINSAVNSTLGRTLNTSLTTLVVLLAIFIFGGESLRGFMFAMIVG 960

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++V   SS+FIA P++      +  N +
Sbjct: 961 VIVGTYSSVFIATPVMFDTLKKKILNDK 988



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/195 (20%), Positives = 83/195 (42%), Gaps = 20/195 (10%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96
               K  ++ GLDL+GG ++ L++   D + G        + +  K       + +   +
Sbjct: 77  DEAKKKELNKGLDLKGGINVTLQISVKDILKGLANNTKSPIFN--KALADADTASKSSDD 134

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
                           D        +     +   +         E++  ++ + +  +I
Sbjct: 135 NYV-------------DLFFDAFDNIKGDSKLASPEVFANKGLSDEVNFQMTDDEVKPII 181

Query: 157 SHAIEQSM----EIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAK 211
              I++S+    E++R+RID  G+++  IQR   S RIL++LPG +D +R ++LL +TA+
Sbjct: 182 RRKIDESIVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGARDIARAQELLSSTAQ 241

Query: 212 MSFHKVLPNNSKKGF 226
           + F +    N+    
Sbjct: 242 LEFWETYEQNNPSFG 256


>gi|91215258|ref|ZP_01252230.1| protein-export membrane protein SecD/SecF [Psychroflexus torquis
           ATCC 700755]
 gi|91186863|gb|EAS73234.1| protein-export membrane protein SecD/SecF [Psychroflexus torquis
           ATCC 700755]
          Length = 1006

 Score =  361 bits (926), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 205/813 (25%), Positives = 361/813 (44%), Gaps = 58/813 (7%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
           ++  +    + LR  + K G+   +++++ +  +I +    ++    I + +    Q   
Sbjct: 184 IDESVTSAFEVLRERIDKFGVTQPNIQRLGDSGRILIELPGAKDISRIQNLLQSTAQLEF 243

Query: 124 SKLNVD-------------PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
             +                  +N+   T + E + V +    +               + 
Sbjct: 244 WDVYRANEFSDYLVTADAIVSENIKSETEKSEETQVEADEQEETETDDLESLLSSEDEEI 303

Query: 171 IDQIGISESTIQRLGSHRIL---IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
            D    +          +     I     +D +++   L      S    LP   K    
Sbjct: 304 EDFSKSNPLLSLVQTVGQPQGPIIAYFAIKDTAKVNSYLSMPQVKS---QLPAGKKFAKF 360

Query: 228 FGVRFLRDSDGNQYLVEDKVE-----ISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
              +  +DS+  +             +SG  +  A   +D      V             
Sbjct: 361 VWGKPAKDSEIIELYALKGNRNNEPQLSGAVVTDAQQTYDQVGRLAVSMQMDGRGSKIWE 420

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
               + +       ++   ++ +     +  I  G+++ISG F+IE A  LA +LRAG L
Sbjct: 421 DMTGKASSQGSQIAIVLDNIVYSAPGVSSGPITGGRSEISGEFSIEEAQDLANVLRAGKL 480

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P   NIV+   VG  LG ++I  G  +    L+ ++L+MI  YGK G+ AD ++ +N++ 
Sbjct: 481 PASANIVQSEIVGPSLGQEAIDSGVLSFGIALIFVLLYMIFYYGKAGIYADIALVVNILF 540

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
              +LS LGA LTLP IAGIVL IG++VD+N+L+ ERIREE  K ++   ++  GF  A 
Sbjct: 541 IFGVLSGLGAVLTLPGIAGIVLTIGMSVDANVLIFERIREELAKGKTQAEAISDGFKNAL 600

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           S+I D+NIT  +  ++L  FG G ++GFA T+ + I+ S+F AI + R  +    +  K 
Sbjct: 601 SSILDANITTGLTGLILLTFGTGPIKGFATTLLIGIVTSLFCAIFLTRLFIAGGGKKGKS 660

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
                     +FL    I I F++ R     IS L  + SI  L T GLN G+DF GG  
Sbjct: 661 LPFSTGITKNWFL---NIDIDFLKKRKVAYIISALAILISIGSLATKGLNQGVDFVGGRS 717

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVL 635
             V   +PV+ + +++ L    +   +       +     N+ +  +    D   Q  + 
Sbjct: 718 YTVRFEQPVNPTEIQTKLVQDLLSVEAKTYGSSSQLKITTNYKIEEEGTVIDDEIQAILF 777

Query: 636 EMVKKKIT--------------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +K+ +                      I ++  VGP I+ ++       +I S I + 
Sbjct: 778 NNLKEYLPGGMILKSFKVGESGNDEKEFGIMSSIKVGPTIADDIKTASYYAIIGSLIVVF 837

Query: 682 IYIWIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSV 734
           +YI +RF +W F+LGA+  +I D+   LG F+L      F +E +   +AA+LT+IGYS+
Sbjct: 838 LYILLRFRRWQFSLGAVAAVIHDVIIVLGLFSLLSNVLPFSLEIDQAFIAAILTVIGYSL 897

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           ND VVV+DR+R+    + T      LI+ +++ T+ R++ TS+   + +  + ++GG  I
Sbjct: 898 NDTVVVFDRIREYFNEHPT-WKMHKLINLAVSSTISRTINTSLTTLVVLTAIFIFGGDSI 956

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             F   +  G+VV   SS+FIA P++    + +
Sbjct: 957 RGFMFALIIGVVVGTYSSVFIATPVMFDSVNKK 989



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 69/493 (13%), Positives = 152/493 (30%), Gaps = 37/493 (7%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF-LKKEGIGVFSMRQIQ 95
           +      ++ GLDL+GG +++L++   D + G      D   +  +   G    + +   
Sbjct: 77  NTAKGKELNKGLDLKGGINVILQISVGDLLKGLANNSKDPAFNQAIADAGEARKNSQDS- 135

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI--- 152
                              + LF Q   SK         +  T      +     N    
Sbjct: 136 ------------------FLELFYQAFESKEGASLASPDIFGTKALSDEVSFDMENSSVK 177

Query: 153 ---DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGT 208
              ++ I  ++  + E++R+RID+ G+++  IQR   S RILI+LPG +D SR++ LL +
Sbjct: 178 PIINRKIDESVTSAFEVLRERIDKFGVTQPNIQRLGDSGRILIELPGAKDISRIQNLLQS 237

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDG---NQYLVEDKVEISGIHLNGATANFDPKT 265
           TA++ F  V   N    ++     +   +     +   E +VE                +
Sbjct: 238 TAQLEFWDVYRANEFSDYLVTADAIVSENIKSETEKSEETQVEADEQEETETDDLESLLS 297

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +      F +         T      P+      +         ++P  K+Q+      
Sbjct: 298 SEDEEIEDFSKSNPLLSLVQTVGQPQGPIIAYFAIKDTAKVNSYLSMPQVKSQLPAGKKF 357

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                      +  + +        N     G+            G + +   M +    
Sbjct: 358 AKFVWGKPAKDSEIIELYALKGNRNNEPQLSGAVVTDAQQTYDQVGRLAVS--MQMDGRG 415

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             +  D +   +   +   + L     + P ++   +  G +  S     E  ++     
Sbjct: 416 SKIWEDMTGKASSQGSQIAIVLDNIVYSAPGVSSGPITGGRSEISGEFSIEEAQDLANVL 475

Query: 446 QSVFCSLDMGFSRAYST-----IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           ++          ++            +   L   + L F     +  +      + +  +
Sbjct: 476 RAGKLPASANIVQSEIVGPSLGQEAIDSGVLSFGIALIFVLLYMIFYYGKAGIYADIALV 535

Query: 501 FTAISIVRAMMIF 513
              + I   +   
Sbjct: 536 VNILFIFGVLSGL 548


>gi|284044637|ref|YP_003394977.1| protein-export membrane protein SecD [Conexibacter woesei DSM
           14684]
 gi|283948858|gb|ADB51602.1| protein-export membrane protein SecD [Conexibacter woesei DSM
           14684]
          Length = 989

 Score =  360 bits (923), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 200/840 (23%), Positives = 364/840 (43%), Gaps = 54/840 (6%)

Query: 41  KNRISLGLDLRGGSHLVLE----VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQ 95
                LGLDL GG  LV +     +  +     +    + +R+ + + G+G   + R  +
Sbjct: 27  TKDTKLGLDLEGGVELVYQGKPTPEVPEVTPEDIDRAVEIIRNRVDQLGVGEPEIVRAGR 86

Query: 96  NKITLSFADSRFKENIADKVTL-----FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
           ++I++     +  E   ++V       F     + L  + +      T+    S  +SQ 
Sbjct: 87  DQISVGLPSVQNIERAKNQVGTPAQLHFFDWEENVLTPEGRFVAPGLTSGDADSTRISQG 146

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
             D      +  ++++  ++         +      +    +      P      L +  
Sbjct: 147 AGDTSQGQPLYDAVKLASRQRAGADSRTGSRTGTAYYLFDREHRYLAGPEESEADLLSAI 206

Query: 211 KMSFHKVLPNNSKKGFMF-----------GVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
                            +               + D     Y+++D V +SG  +   T 
Sbjct: 207 DRRTLPPGSEVLGVPQGWVVLQAVTRDSGETIEMGDPSARFYVLKDNVALSGKDIKDPTQ 266

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN---------- 309
            F+    +P V+  F   G   F  +TR+   +  ++ L G      V +          
Sbjct: 267 GFNDLQ-QPDVEFRFTNRGKSAFQNITREISQRGQSLALPGVNPANVVQHFAVELDGRLI 325

Query: 310 ------------QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A I G FTI +A  LA +L+ G+LPI L ++ +  V A LG
Sbjct: 326 SVASIDPQRLPDGIDGENGAIIEGGFTITSAQDLANLLKLGALPIGLELISQSQVSATLG 385

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
             ++ +G  A + GL L+ +F++  Y   G++A F++ +  +   AL+ L+  T+TLP I
Sbjct: 386 KQALNEGLVAGIVGLALVAVFLVAFYRILGVIATFALLIYGVYFFALIKLVPITMTLPGI 445

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG +L IG+A D+NI++ ER++EE R  +SV  ++  G+ +  + I D+N+  ++   +L
Sbjct: 446 AGTILTIGVAADANIVIFERVKEEVRAGRSVPAAISAGYRKGLTAIIDANVVTVMVAFIL 505

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F      V+GFA T+G+  L+S+FTA+   +A++  + R +    +              
Sbjct: 506 FMLATAGVKGFAFTLGVGTLVSLFTAVFATQAILTTMGRTRL---LARPSALGASGEGHR 562

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               FM    W   +S +  +     + + GLN+GIDF  G ++     +  D S VRS 
Sbjct: 563 WKADFMGLSKWFFSMSGIILLICALAIGSKGLNFGIDFTSGTRITTNLQQSADESQVRSV 622

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           LE +   D   Q        L     Q      +   ++ V+  +       +  ++  V
Sbjct: 623 LEGVGASDAKIQRV--SNAELGPNVVQISTEELRPAQVQTVRTALEREFGGVSNFSSSSV 680

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP     +    IV +I S   +  YI +RF+W FA+  +  +  DI    G +AL G E
Sbjct: 681 GPSFGETIANNAIVAIIASLFVISAYIALRFQWRFAVPVLIAVAHDILIVSGIYALTGRE 740

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
              + VAA+LT++GYS+ D ++V+DR+R+NM       +F  ++++S++E L RS+ TS 
Sbjct: 741 VTASTVAALLTVLGYSLYDTIIVFDRIRENMPRMPR-AAFSQIVNRSMSEVLTRSLATSF 799

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR----AKNARI 833
           +  + +L + ++GG  +  FA  +  G++  A SS+FIA P+L    +      A+  RI
Sbjct: 800 STGLPILALMLFGGETLRDFAFALLVGVLSGAYSSVFIAGPVLWHWKEREPVYVARRKRI 859


>gi|326800368|ref|YP_004318187.1| protein-export membrane protein SecD [Sphingobacterium sp. 21]
 gi|326551132|gb|ADZ79517.1| protein-export membrane protein SecD [Sphingobacterium sp. 21]
          Length = 1010

 Score =  359 bits (921), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 214/819 (26%), Positives = 376/819 (45%), Gaps = 59/819 (7%)

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
           +    + LR+ + K G+   ++++ Q  N+I +       ++ +   +    +    +  
Sbjct: 180 IDRSFNILRTRIDKFGVTSPNIQRQQGTNRILIELPGVSDEDRVRKLLQGSAKLEFWETY 239

Query: 128 VDPKKNLLVTTTEKEISIVLSQ-------------------------------NNIDQVI 156
            + +   L+    + ++  L                                    D   
Sbjct: 240 DNSEIFPLLENINRTLASTLKADTKSNSSVTAADTSAKDTTGGRLASLGGNKAAGSDSTK 299

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE------QDPSRLRQLLGTTA 210
             +   ++E  + +     +    I +    + ++           +D + +     +  
Sbjct: 300 KDSSTVALEQAKNQNPLFAVLSPNIGQGPQGQQMLGQGPVIGYVLQKDTALVNSYFNSAE 359

Query: 211 --KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
              +    V    S K      +  +        +     ++G  +  A A+ D +T+ P
Sbjct: 360 IKAIIPGNVKLLWSVKPVSKETKMFQLFAVKPTGLNAGPVLTGNVIADARADVDQRTNNP 419

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVV----LDGRVLTAPVINQAIPSGKAQISGNFT 324
            V++  +  GAR + +++               LD  V +AP +   IP+G + I+GNFT
Sbjct: 420 QVEMVMNSEGAREWRKISAAAAAANPKKAIAIVLDNTVYSAPTVQDEIPNGVSSITGNFT 479

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E    LA +L+AG LP    IVEE  VG  LG  +I  G  + V GLV++++FMI  Y 
Sbjct: 480 FEDTQDLANVLKAGRLPAPAKIVEEAIVGPTLGQAAIDAGINSSVIGLVVVLIFMIFYYN 539

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           + GLVA+ ++  NV   + +L+ LGA LTLP IAGIVL +G AVD+N+L+ ERIREE   
Sbjct: 540 RAGLVANIAVIFNVFFIMGILASLGAVLTLPGIAGIVLTMGTAVDANVLIYERIREEYAL 599

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            + V  ++  G+  A  +I DS IT  +  ++L+ FG G + GFA T+ + I+ S+FTAI
Sbjct: 600 GKGVRQAISDGYKHAMPSILDSQITTFLVGLILYIFGTGPILGFATTLLIGIITSLFTAI 659

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
            I R +  ++I+     S+              +   F++ R     ISI  +I S+  +
Sbjct: 660 FITRIIFEWMIKKDMKISVSYPWSDHTLK---NVNFGFIKNRKKFYAISIALTIISLISI 716

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           FT G + G+DF GG    V   + V+L  VR ++          + F G+    V   Y 
Sbjct: 717 FTKGFSLGVDFSGGRTYTVKYEKAVNLEEVRDHVNGTFNVTSEVKTFGGDNQLRVTTPYL 776

Query: 625 PG--DSVAQTRVLEMVKKKITE-IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               D  A  +VL+ + + + +       I +++ VGP I+ ++    I  VI S I + 
Sbjct: 777 IDQTDDAADKQVLDKLNEGLAKVQNNPYQIVSSQKVGPTIANDIKVSAIYSVIFSIIVIA 836

Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSV 734
           +YI IRF+ W +++ A  +L  D    LG F+L      F ++ +   +AAVLT++ YS+
Sbjct: 837 LYILIRFRKWQYSIAAAISLAHDAIILLGIFSLFDGILPFSLDLDQHFIAAVLTVLAYSI 896

Query: 735 NDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           ND VVV+DR+R+ ++ +   +     +++ +IN+TL R++ TS+     +  + V+GG V
Sbjct: 897 NDTVVVFDRIREYLREHRAKNEPISHVVNTAINKTLSRTIITSLTVIFVLAVLFVFGGEV 956

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           I  F+  +  GI+    SSIF+AAPI   +      N +
Sbjct: 957 IRGFSFAILIGIIFGTYSSIFLAAPIFADLQGDSETNTK 995



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 83/194 (42%), Gaps = 13/194 (6%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
           +  ++LGLDL+GG ++ +E+   + ++       D   +F K         +  Q     
Sbjct: 73  ERELALGLDLKGGMNVTMEISLKELISNLADNPKD--ENFKKALDNAEARSKDSQKDFVS 130

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
            F +         K+    +      N D   N + + +     +   Q         AI
Sbjct: 131 LFGEEF------KKLNPNGKLATFFANKDNAVNNITSNSSDGDILAFLQKESG----SAI 180

Query: 161 EQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           ++S  I+R RID+ G++   IQR   ++RILI+LPG  D  R+R+LL  +AK+ F +   
Sbjct: 181 DRSFNILRTRIDKFGVTSPNIQRQQGTNRILIELPGVSDEDRVRKLLQGSAKLEFWETYD 240

Query: 220 NNSKKGFMFGVRFL 233
           N+     +  +   
Sbjct: 241 NSEIFPLLENINRT 254


>gi|325281879|ref|YP_004254421.1| protein-export membrane protein SecD [Odoribacter splanchnicus DSM
           20712]
 gi|324313688|gb|ADY34241.1| protein-export membrane protein SecD [Odoribacter splanchnicus DSM
           20712]
          Length = 1000

 Score =  359 bits (921), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 200/827 (24%), Positives = 376/827 (45%), Gaps = 65/827 (7%)

Query: 64  DFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTL 117
           D +    +   D     LR+ + + G+   ++R+     +I +     +  + +   +  
Sbjct: 172 DVIRQEAEGAIDNTFHILRTRIDRFGVAQPNIRKADISGRIVIELPGIKDAQRVRKLLQG 231

Query: 118 FLQGVN---------------------------------SKLNVDPKKNLLVTTTEKEIS 144
                                                  +  N   ++           S
Sbjct: 232 TAALEFYETFDNGDFFPYLQAANEKARTIVEAEEILTTENAANATAEQPETTKADTTANS 291

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI--SESTIQRLGSHRILIQLPGEQDPSRL 202
           ++      D   +   +++       +  +     +    ++     LI     +D + +
Sbjct: 292 LISQAAAQDSTNNLLADEAAFKKANPLFSVLTPNIDRQSGQIIPTGSLIGYSHVKDTAAV 351

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            ++L      +          +    G      +       + K  + G  +  A   ++
Sbjct: 352 NEILTMPQVKATLPRNARLLWEMKPNGEVIALHAIKIT-TRDGKAPLDGGAVVDARQEYE 410

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
             + +PVV ++ +  GA+ +  +T++N+G  +A+VLDG V ++P +N  I  G +QISG 
Sbjct: 411 HNSGRPVVSMNMNGEGAKVWARLTKENVGHSIAIVLDGYVCSSPNVNDEIKGGSSQISGQ 470

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           F ++ A  LA +L++G LP    I+ +  VG  LGS+SI  G  + V    L++++M+  
Sbjct: 471 FDVKEAQDLANILKSGKLPAPARIIADEIVGPSLGSESIQSGMWSFVIAFGLVLIYMLFF 530

Query: 383 Y-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           Y    GL AD ++F N+     +L+ +GA LTLP IAGIVL +G++VD+N+L+ ERI+EE
Sbjct: 531 YSKGAGLAADIALFTNLFFLFGVLASIGAVLTLPGIAGIVLTMGMSVDANVLIYERIQEE 590

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  + +  ++  G+ +AYS I D N+T L+   +L++FG G ++GFA T+ + I  S+F
Sbjct: 591 LRAGKGLRLAIKEGYKQAYSAIIDGNVTTLLTGFILYYFGEGPIKGFATTLIIGIFTSLF 650

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            AI I R ++    +            + +      +   F+  R  G  +S + ++  +
Sbjct: 651 CAIFITRIILDNASKKNDNVRFTTPFTANWLR---DVHFPFLERRKVGYTVSGIITVVCL 707

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +FT G + GIDF GG    V  ++PV++  V  +L ++       + F G+    +  
Sbjct: 708 VSMFTRGFDKGIDFVGGRTYTVAFDQPVEVEKVAESLAAVYGSAPEVKTFGGDNQVRITT 767

Query: 622 QYQPGDS--VAQTRVLEMVKKKITEIVPL---------STIQNTEIVGPKISRELIRKGI 670
           +Y+  D    A   V  ++ + +   +P             Q ++ VGP ++ ++ R  I
Sbjct: 768 KYKIEDEGTEADDEVEALLYEGLKSYLPDGTSKEVFLSDYRQMSQKVGPAVAEDVTRAAI 827

Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAV 723
             VI + + + +YI +RF  W +  GA+  L  +    LG F+L      F +E +   +
Sbjct: 828 WSVIFALLVIFVYIMVRFSKWQYGAGAVLGLAHNTIVVLGLFSLLAGFLPFSLEIDQAFI 887

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA+LT++GYS+ND VVV+DR+R+   LY       ++ D ++N TL R+  TS++  + +
Sbjct: 888 AAILTVVGYSINDTVVVFDRIREYHHLYPKRDDL-EVTDAALNSTLRRTFSTSLSTLVVL 946

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           L + ++GG+ I  F   +  GI+V   SS+F+A P+         K 
Sbjct: 947 LAIFIFGGTSIKGFVFALLIGIIVGTYSSLFVATPLAYEFRKRFGKK 993



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 20/180 (11%)

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
            ++LGLDLRGG ++ +EVD  D V        DE  +   +E + + +            
Sbjct: 76  ELNLGLDLRGGMNVTMEVDVVDVVRSLANYSQDEAFNQALQEAVKMRTSS---------- 125

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH---- 158
                 ++         + +     +           + +I I  S   +  VI      
Sbjct: 126 -----PKDFVTLFGEAFERIAPNAQLASPNIFGTVELKDKIKIGASNKEVLDVIRQEAEG 180

Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           AI+ +  I+R RID+ G+++    +   S RI+I+LPG +D  R+R+LL  TA + F++ 
Sbjct: 181 AIDNTFHILRTRIDRFGVAQPNIRKADISGRIVIELPGIKDAQRVRKLLQGTAALEFYET 240


>gi|297184088|gb|ADI20207.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 995

 Score =  359 bits (919), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 208/829 (25%), Positives = 361/829 (43%), Gaps = 64/829 (7%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKV 115
           ++ +    V   +      LR+ + + G+   ++++     +I +     +    +   +
Sbjct: 171 VQAEIRRDVEAAIANVFTVLRARIDQFGVVQPNIQRLEGTGRILVELPGVKDPARVQKLL 230

Query: 116 TLFLQGVNSKLNVDPK------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
               +     +    +            ++L+        ++  + +  D  I  A   +
Sbjct: 231 QSTAELQFWNMYEGAEVLPFLVSANDKLRDLVEGEKATTETVEEAPDFSDFAIEDAEVPA 290

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPG---------EQDPSRLRQLLGTTAKMSF 214
                   D +  +    +          +            +D +++   L     +  
Sbjct: 291 DSSATDSSDVLSTNNPLFEVFRPMVSETGMAMQGPRVGYSLIRDTAKVNAFLARPEIVQM 350

Query: 215 HKVLPNNSKKGFMFGVRFLRDSD---GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                 N+K  +        D       +   E+  E+ G  +  A  + D      V  
Sbjct: 351 MNQELRNAKFLWSSKPEPNSDIITLLAIKGNRENTPELDGGVIVDARPDLDEYNRNIVTM 410

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                   +            P   V   LD  V + P +   I  G+ QI+GNF+ E +
Sbjct: 411 AMNGTGAQKWQRLTAEAAAQTPKRSVAVVLDNYVYSYPQVQNEIAGGRTQITGNFSAEES 470

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             LA +LRAG L     I++   VG  LG ++I     +    L L++L+M   Y   GL
Sbjct: 471 ADLANILRAGKLDAPARIIQSDVVGPSLGKEAISASINSFAIALALVLLYMYFYYSGAGL 530

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           VA+ ++ +N+ L   +L+ L A LTLP +AGIVL IG+AVD+N+L+ ERIREE R  + +
Sbjct: 531 VANMALLINMFLIFGILASLRAVLTLPGMAGIVLTIGMAVDANVLIFERIREEMRLGKGL 590

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             ++  G+  + S I D+N+T  +  ++LF FG G +RGFA T+ + IL S+FTA+ I R
Sbjct: 591 RAAIVDGYKNSNSAIIDANVTTFLTGIILFAFGTGPIRGFATTLMIGILTSLFTALFISR 650

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
            +    +  KK           ++      +  F++ R    GIS +     +  LFT G
Sbjct: 651 IVFERRLAGKKDIKFSTKTTKNWYTNM---SFDFLKKRKVAYGISTVVIAIGLFSLFTKG 707

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQ 622
           LN G+DF GG    V  ++PV++S V  +L +  + +         +        ++   
Sbjct: 708 LNLGVDFVGGRSFQVRFDQPVEVSDVAESLSNAFVDEEGNSYTPVVKTLGDANQVIITTS 767

Query: 623 YQPG------DSVAQTRVLEMVKKKITEIVPLSTIQNTEIV-----------GPKISREL 665
           Y+ G      D   Q+++   V     E +PL      E             GP I+ ++
Sbjct: 768 YRIGETGPTIDEDIQSKLYVGVADFFAEELPLEYFFTDETEDAIGLVGSRVVGPTIADDI 827

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718
               +  +I S I + +YI IRF+ W F+LGA+  L+ D+   +G F+L      F +E 
Sbjct: 828 KSGAVYSIIFSLIVVFLYILIRFRKWQFSLGAVVALLHDVLFVMGVFSLADGFLPFQLEV 887

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           +   +AA+LT+IGYS+ND VVV+DR+R+NM   +        I+KS+N+TL R+  TS+ 
Sbjct: 888 DQAFIAAILTVIGYSLNDTVVVFDRIRENM--GSRGKQNGVSINKSLNQTLSRTFNTSLT 945

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            F  +L + ++GG VI  F   +  G++V   SS+FIA P++    D  
Sbjct: 946 TFFVLLVIFLFGGEVIRGFMFALLLGVLVGTYSSLFIATPVMFDASDKE 994



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/390 (14%), Positives = 135/390 (34%), Gaps = 18/390 (4%)

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF-----TAIS 505
           +++     A S+  DS+        +   F            G  +  S+          
Sbjct: 282 AIEDAEVPADSSATDSSDVLSTNNPLFEVFRPMVSETGMAMQGPRVGYSLIRDTAKVNAF 341

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           + R  ++ ++  +   +  +              +     R     +     + +   L 
Sbjct: 342 LARPEIVQMMNQELRNAKFLWSSKPEPNSDIITLLAIKGNRENTPELDGGVIVDARPDLD 401

Query: 566 THGLN---YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            +  N     ++  G  +   L       +  RS    L     S+     E        
Sbjct: 402 EYNRNIVTMAMNGTGAQKWQRLTAEAAAQTPKRSVAVVLDNYVYSYPQVQNEIAGGRTQI 461

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                +     +  +++    ++   + I  +++VGP + +E I   I    I+   +L+
Sbjct: 462 TGNFSAEESADLANILRA--GKLDAPARIIQSDVVGPSLGKEAISASINSFAIALALVLL 519

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           Y++  +     L A   L++++    G  A       L  +A ++  IG +V+  V++++
Sbjct: 520 YMYFYYS-GAGLVANMALLINMFLIFGILASLRAVLTLPGMAGIVLTIGMAVDANVLIFE 578

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ M+L       R  I      +    +  ++  F++ + +  +G   I  FA  + 
Sbjct: 579 RIREEMRL---GKGLRAAIVDGYKNSNSAIIDANVTTFLTGIILFAFGTGPIRGFATTLM 635

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            GI+    +S+F A  I   +++ R    +
Sbjct: 636 IGIL----TSLFTALFISRIVFERRLAGKK 661



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/336 (19%), Positives = 124/336 (36%), Gaps = 13/336 (3%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
           K  ++LGLDL+GG +++LEV   D + G +    D    F++       +  Q QN    
Sbjct: 71  KKEMNLGLDLKGGMNVILEVSVKDVLKGLVANAQDP--RFIQAIANTDEAQSQGQNNYLN 128

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
           +F     K +      L L   +     +    +              Q  I + +  AI
Sbjct: 129 TFFAEFDKISAETGGGLLLSDASLFGTPEMTGKVGFNAANDA-----VQAEIRRDVEAAI 183

Query: 161 EQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
                ++R RIDQ G+ +  IQR  G+ RIL++LPG +DP+R+++LL +TA++ F     
Sbjct: 184 ANVFTVLRARIDQFGVVQPNIQRLEGTGRILVELPGVKDPARVQKLLQSTAELQF----- 238

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
            N  +G       +  +D  + LVE +   +         +        V   S     +
Sbjct: 239 WNMYEGAEVLPFLVSANDKLRDLVEGEKATTETVEEAPDFSDFAIEDAEVPADSSATDSS 298

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
                           V   G  +  P +  ++    A+++          +       +
Sbjct: 299 DVLSTNNPLFEVFRPMVSETGMAMQGPRVGYSLIRDTAKVNAFLARPEIVQMMNQELRNA 358

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
             +  +  E  +    L +    +     + G V++
Sbjct: 359 KFLWSSKPEPNSDIITLLAIKGNRENTPELDGGVIV 394


>gi|189501552|ref|YP_001957269.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Amoebophilus asiaticus 5a2]
 gi|189496993|gb|ACE05540.1| protein-export membrane protein SecD [Candidatus Amoebophilus
           asiaticus 5a2]
          Length = 995

 Score =  357 bits (914), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 208/808 (25%), Positives = 370/808 (45%), Gaps = 41/808 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQ 120
           D  +   +    + +RS + + G    ++++     KI +        E +   +    Q
Sbjct: 178 DTEIEHAIDRAFEIIRSRIDRFGTSQPNIQRLQGTGKIQIELPGVNNPERVRKLLQGVAQ 237

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               K+    + + ++      +          +    +   +    ++   Q+    ST
Sbjct: 238 LRFWKVYELSQIDKILQAVNSLLVAEEKGKAKVEPTKPSDNANNSAAKELTAQLEQGIST 297

Query: 181 IQRLGSHRILIQL------------PGEQDPSRLRQLLGTTA---KMSFHKVLPNNSKKG 225
            +    + I                   +D   ++Q+L             +   + K  
Sbjct: 298 PKEQDENIISPLYKLLKLKPGHGLTYSVEDIHIIQQILERPDVKLLFPKDLMWLWDVKPH 357

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
            +     +      Q    +   + G  +  A   FD       V +  +  GA+ +  +
Sbjct: 358 KLENGTEVLSVHPIQIGKNNLPLLEGDVITDARQVFDKYGKPA-VSMQMNGQGAKLWKNI 416

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  NIGK +A+ LD +V +AP +N  IP G +QI+GNF+IE A  LA +L+AGSLP  + 
Sbjct: 417 TASNIGKSIAITLDNKVYSAPTVNTEIPDGNSQITGNFSIEEAKDLANILKAGSLPAPVK 476

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           I EE  +G  L   +  +G  ++  GL ++VLFM++ Y K G+VA+ ++  N++  L +L
Sbjct: 477 ITEEAIIGPTLSKTAQAQGITSMALGLAVVVLFMLLYYAKGGIVANLALLFNILFILGIL 536

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           +   A LTL  IAGIVL IG+++D+N+L+ ERIREE R    +  +++ G+ +AYS+I D
Sbjct: 537 AQFNAALTLSGIAGIVLTIGMSIDANVLIFERIREELRIGNKMREAINKGYQKAYSSIID 596

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SN+T  +   +L+  G G VRGFA T+ + I+ S FTA+ I R +  +  +  K  +I  
Sbjct: 597 SNVTTFLTGAILYGLGQGPVRGFATTLMIGIVTSFFTAVFITRLIFTWWAKNSKEDNISF 656

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           + +    ++ +C      + + + V  S+  +I  + ++   GLN G+DF GG    +  
Sbjct: 657 SFVFNKNVLTNCRIDFMGKRKLFYVASSLFIAIGLLLIVKQGGLNLGVDFTGGRSYVINF 716

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT-- 643
           + PV+ +++++ L        +     G  N +           +     +     ++  
Sbjct: 717 SEPVETALLKTKLAEQLGDQSTEVKSYGANNVVKITTSYLIQETSSEAEEKAKNTLVSSI 776

Query: 644 --------------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688
                            P   I +   VGP I+ ++       +I S + +  YI IRF 
Sbjct: 777 QESTKFSYTDDVTGAKNPSFAIVSISKVGPSIAGDIQASAKKSIIFSLLVIFGYIVIRFR 836

Query: 689 KWYFALGAITTLILD---ITKTLGFFALFG--IEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +W F L A+  L+ D   +  T      FG   E +   +AA+LT+IGYS+ND VV++DR
Sbjct: 837 RWQFGLSAVIALLHDSLTVFTTFAIARAFGYTYEIDQVFIAAILTIIGYSINDTVVIFDR 896

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           +R+  +L+    +F  + +KSIN+TL R++ TS    ++V  + VWGG V+  F+  +  
Sbjct: 897 IREMQRLHPN-ENFTSIANKSINDTLSRTLITSFTTLVAVFILFVWGGEVLRGFSFALLV 955

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNA 831
           GI   + SSI IAAP++L       +  
Sbjct: 956 GITFGSYSSICIAAPLILDFSKRNYQKR 983



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 17/182 (9%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
           +N ++LGLDL+GG H+ LEV   + + G      D    FL    +         +    
Sbjct: 78  ENALNLGLDLQGGMHVTLEVSPVELIQGLSGNSKD--EKFLAAIKMAEQKQHTKAS---- 131

Query: 101 SFADSRFKENIADKV--TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
               ++       ++        + +       +N +      +  +      I+    H
Sbjct: 132 -LPFTKLFYQAYKEISPEGKFSDIFA---TAANRNRVTRHASDQEILKYLDTEIE----H 183

Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           AI+++ EIIR RID+ G S+  IQR  G+ +I I+LPG  +P R+R+LL   A++ F KV
Sbjct: 184 AIDRAFEIIRSRIDRFGTSQPNIQRLQGTGKIQIELPGVNNPERVRKLLQGVAQLRFWKV 243

Query: 218 LP 219
             
Sbjct: 244 YE 245


>gi|312887679|ref|ZP_07747269.1| protein-export membrane protein SecD [Mucilaginibacter paludis DSM
           18603]
 gi|311299835|gb|EFQ76914.1| protein-export membrane protein SecD [Mucilaginibacter paludis DSM
           18603]
          Length = 986

 Score =  356 bits (913), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 197/813 (24%), Positives = 366/813 (45%), Gaps = 56/813 (6%)

Query: 70  LQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
           +      L + + + G+   +++ Q  N+I +       KE +   +         +   
Sbjct: 177 ITQAKTVLTTRIDQFGVTQPNIQLQQGNRILIEMPGVFDKERVDKLLQGSANLEFYETFD 236

Query: 129 DPKKNLLV---------------TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR--- 170
           + +   ++               T T     +  +           +    ++ +     
Sbjct: 237 NAEFYQVLINVDKILAAKAKINKTDTTAAQKVAATAETKKDSTKADLSLLNKVQKNAGKD 296

Query: 171 ------------IDQIGISESTIQRLGSHRILIQLPG-------EQDPSRLRQLLGTTAK 211
                        + +        R G +      PG       ++D +++   L +   
Sbjct: 297 STSALGKKNQLNQNPLFAVMQLNTRQGENGQPQLGPGPVVGYSAQKDTAKVNAYLNSADA 356

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKPVV 270
            S                   + +    +    E+   ++G  ++ A  + D K +  VV
Sbjct: 357 KSVIPHNVKLLWGVKPIEKTKIFELYAIKLSGAENGPVLAGDVISDARPSNDQKGNPEVV 416

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNFTIET 327
            +   +   +           +P   +   LD  V +AP +   I  G + ISGNF+IE 
Sbjct: 417 MVMNSDGATKWRRVTAVAAAKEPKKAIAIVLDNNVYSAPTVQNEIAGGISSISGNFSIED 476

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
              LA +L++G L    +I+ E  VGA LG ++I  G  + + GL+++++FM+  Y + G
Sbjct: 477 TKDLANVLKSGRLKAPAHIIGEEIVGASLGQEAISAGLTSSLVGLLVVLIFMVAYYNRAG 536

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            VA  ++ +NV   + +L+ L A LTL  IAGIVL +G+AVD+N+L+ ER+REE    +S
Sbjct: 537 TVACIAVVINVFFLMGVLASLNAVLTLEGIAGIVLTLGIAVDANVLIYERVREELAHGKS 596

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           +  ++  GF+ A S+I DSNI+  +   +L+ FG G +RGFA T+ + I+ S+F ++ I 
Sbjct: 597 LRIAVTDGFTHALSSILDSNISTFLTGFILYIFGSGPIRGFATTLMIGIVTSLFCSLLIS 656

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
           R +  ++++            S  F         F++ RF     S +F +  +  +FT 
Sbjct: 657 RLIFEWMLKKDIQIKFSNPWSSHTFK---NAHFAFVKNRFKFYIFSGVFILAGLVSMFTQ 713

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY---Q 624
           G NYG+DFKGG    V  ++PV    VR  +      +   + F    N +         
Sbjct: 714 GFNYGVDFKGGRTYIVRYDQPVSSESVREAVVLTLNKETIVKTFGTSGNQVSITTTYLID 773

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
              + A T+V E +K  + ++     I + + VGP I+ +L    I  V+ + + + +YI
Sbjct: 774 DNSNEAGTKVQEQLKTGLAKVPGKYQIMSQQTVGPTIASDLKSSAIYAVLFAILIISVYI 833

Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDK 737
            IRF+ W F+LGA+     D    L FF+L      F ++ +   +AA+LT+IGYS+ND 
Sbjct: 834 LIRFRKWQFSLGAMIATAHDALLVLSFFSLFKDVLPFSLDIDQKFIAAILTVIGYSINDT 893

Query: 738 VVVYDRMRKNMK-LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           VVV+DR+R+ ++  +  +    ++I+++IN TL R++ T++     ++ + ++GG VI  
Sbjct: 894 VVVFDRIREFLELHHAKTDKPEEVINQAINSTLSRTIITALTVIFVLVVLFIFGGDVIRG 953

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           F+  +  G+     SSI +A P+++       +
Sbjct: 954 FSFALLIGVTFGTYSSICVATPVIVDFGKKDLR 986



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 72/183 (39%), Gaps = 25/183 (13%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF-LKKEGIGVFSMRQIQNKIT 99
              I+LGLDL+GG  + +++   + V        D   +  L    +   +         
Sbjct: 71  DKEIALGLDLKGGMDVTMQISLVELVKSLSNNNPDVALNQALANASVIAKTST------- 123

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVD-PKKNLLVTTTEKEISIVLSQNNIDQVISH 158
                       AD +TLF+Q                    +  I    S N +   +  
Sbjct: 124 ------------ADYITLFVQEYEKLAPNAKLAAIFSTKENQDHIKFNASNNEVKSFLQD 171

Query: 159 ----AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
               AI Q+  ++  RIDQ G+++  IQ    +RILI++PG  D  R+ +LL  +A + F
Sbjct: 172 QAKVAITQAKTVLTTRIDQFGVTQPNIQLQQGNRILIEMPGVFDKERVDKLLQGSANLEF 231

Query: 215 HKV 217
           ++ 
Sbjct: 232 YET 234


>gi|260062010|ref|YP_003195090.1| bifunctional preprotein translocase subunit SecD/SecF
           [Robiginitalea biformata HTCC2501]
 gi|88783572|gb|EAR14743.1| protein-export membrane protein SecD/SecF [Robiginitalea biformata
           HTCC2501]
          Length = 984

 Score =  355 bits (911), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 187/803 (23%), Positives = 345/803 (42%), Gaps = 40/803 (4%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
           V+  +    + LR  +   G+   ++++  N  +I +    +R      D ++   Q   
Sbjct: 185 VDEAVVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGARDIARAQDLLSSTAQLEF 244

Query: 124 SKL-NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS---ES 179
            +      +  +       E    + + +  + +  A E    +     D + ++     
Sbjct: 245 WETYEPGNQHLINFFIQANEELKSIVEADTPEPMEEASEIDSLLSDVAQDSLDLATERNP 304

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             ++L  +     +                       + P      FM+           
Sbjct: 305 LFEKLQLNGPGYAIGLAAIQDTAEIGSWLRMPRIRRLLPPQVQFTKFMWERPSQGTEVAA 364

Query: 240 QYLVE----DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            Y ++        +SG  ++ A   FD      V                   N+     
Sbjct: 365 LYALKSNRDGVPRMSGDVVSDARDQFDQYNRPAVGMDMNVRGAREWQELTNEANLNNTGI 424

Query: 296 VVLDGRVLTAPVINQAI---PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            ++    +            P G ++I+G FT+     +A +LRAG LP +  I++   V
Sbjct: 425 AIVLDNRVYTAPGVSQKGGIPGGSSEITGTFTVTETKDIANVLRAGKLPAEAEIIDSFVV 484

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG ++I  G  + V  ++ ++++MI  YG+ GL +D ++  N++L   +L+ LGA L
Sbjct: 485 GPSLGQEAIDSGFTSFVIAMIFVLIWMIFYYGRAGLFSDIALVFNIVLIFGVLASLGAVL 544

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAGIVL IG++VD+N+L+ ERI+EE +K + +  ++  GF  A S+I D+NIT  +
Sbjct: 545 TLPGIAGIVLTIGMSVDANVLIFERIKEELQKGKGMAQAVSDGFDNALSSILDANITTGL 604

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
             ++L  FG G ++GFA T+ + IL S+FTAI + R ++   +  +  K           
Sbjct: 605 TALILLVFGSGPIKGFATTLIIGILTSLFTAIFVTRLLIDAYLNRRGRK--LDFATGITR 662

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +   + I F+  R     +S +  I  +  LFT GL+ G+DF GG    +     V+  
Sbjct: 663 GLFQNMNIDFLSKRKIAYVVSGVLLIAGLASLFTKGLDQGVDFVGGRNYQIRFVDAVNPV 722

Query: 593 VVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKKKITE--- 644
            +   L        +    D  +      + V +Q    D      +   ++K + +   
Sbjct: 723 EISGELTDALGSASAKTFGDANQIMVTTKYKVDVQGTEVDEEILGILFNSLQKYLPDGTT 782

Query: 645 --------IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALG 695
                         +     VGP I+ ++ +  +  VI S   + +YI +RF +W F+LG
Sbjct: 783 YEDFVPGGTNEDVGVMKYRKVGPTIADDIKKNAVWAVIGSLAVVFLYILLRFRRWQFSLG 842

Query: 696 AITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           A+  +  D+   LG F++      F +E +   +AA+LT+IGYS+ND VVV+DR+R+ + 
Sbjct: 843 AVAAVFHDVLIVLGVFSVTSSLMPFSMEIDQAFIAAILTVIGYSLNDTVVVFDRIREIIA 902

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                    +  + ++N TL R++ TS+   + +L + ++GG  +  F   M  G++V  
Sbjct: 903 E--RGWRAGENTNMALNSTLSRTLNTSLTTLVVLLSIFIFGGETLRGFMFAMIVGVIVGT 960

Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832
            SS+FIA PI+      +    +
Sbjct: 961 YSSLFIATPIMFDSLSRKISAGK 983



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/187 (21%), Positives = 78/187 (41%), Gaps = 20/187 (10%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
             K  ++ GLDL+GG ++ L++   D ++G      +   +  K       + R      
Sbjct: 79  AKKKELNKGLDLKGGINVTLQISVRDILSGLANNTKNPAFN--KALADADAASRNSDETY 136

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
                         +        V     +             EI+  +S   +  +I  
Sbjct: 137 -------------LELFFDAFDAVKGDTKLASPDIFANKGLSDEINFEMSDEEVKPIIRR 183

Query: 159 AIEQSM----EIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
            +++++    E++R+RID  G+++  IQR   S RIL++LPG +D +R + LL +TA++ 
Sbjct: 184 KVDEAVVSAFEVLRERIDGFGVTQPNIQREGNSGRILVELPGARDIARAQDLLSSTAQLE 243

Query: 214 FHKVLPN 220
           F +    
Sbjct: 244 FWETYEP 250


>gi|163755881|ref|ZP_02162998.1| putative protein-export transmembrane SecDF protein [Kordia algicida
            OT-1]
 gi|161324052|gb|EDP95384.1| putative protein-export transmembrane SecDF protein [Kordia algicida
            OT-1]
          Length = 1015

 Score =  354 bits (907), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 208/818 (25%), Positives = 370/818 (45%), Gaps = 55/818 (6%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123
            V+  +    + L   + + G+   +++++    +I +    ++    I   +    +   
Sbjct: 198  VDQSIVSAKEVLNKRIDQFGVTQPNIQRLGTSGRILIELPGAKDVIRIEKLLQRTAELQF 257

Query: 124  SKLNVDPKKNLLVTTTEKEISIVL---------SQNNIDQVISHAIEQSMEIIRQRIDQI 174
             K   D  K      +  E    L         + +  +       +Q   +     D +
Sbjct: 258  WKTYNDNAKLSSYLFSVNEKLKELPGYSKDTQKADDATENEGEDDADQDALLTSTEEDSL 317

Query: 175  GISESTIQRLG-----SHRILIQLPGEQDP--SRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +    + +L         I      ++D   S L   +      +  + +     K   
Sbjct: 318  NVINPLLDKLRLANAGGGIIGFAKEEDKDTIMSLLSNDILKQVTPAELRYVRFAFGKEPT 377

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
             G+  L   DG +   + + ++ G  +    +    +  KP V++  + +GA+++  +T 
Sbjct: 378  NGMYELYALDGKRKGNKAEPQMKGDVV-DGASQGYDQYSKPSVNMQMNGIGAKQWENLTE 436

Query: 288  DNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
            +   + + +     +       V N  I  G  +ISG FTIE A  LA +LRAG LP + 
Sbjct: 437  EVYNERVNIAVVLDNIVYSAPGVSNGKISGGNTEISGQFTIEEAQDLANVLRAGKLPARA 496

Query: 345  NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
            +I++   VG  LG ++I  G  + +  L L++++MI  YG+ GL AD ++  N++L   +
Sbjct: 497  DILQSEIVGPSLGQEAIDSGLMSFLIALGLVLVWMIFYYGRAGLFADIALAFNILLIFGV 556

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM--GFSRAYST 462
            LS LGA LTLP IAGIVL IG++VD+N+L+ ER+REE  K QS+  ++     +  A S+
Sbjct: 557  LSNLGAVLTLPGIAGIVLTIGMSVDANVLLFERVREELAKGQSLQEAIKHAFSWKGAMSS 616

Query: 463  IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            IFD+NIT  +  ++LF FG G ++GFA T+ + I  S+FTAI I R ++ + I       
Sbjct: 617  IFDANITTGLTALILFLFGTGPIKGFATTLLIGIGTSLFTAIFITRLLIDWYIGKGNNLD 676

Query: 523  IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQL 581
                     F       + F++ R     IS +     +  +LF   LN G+DF GG   
Sbjct: 677  FSTGVTKNLFRNM---NVSFLKKRKIAYVISGIVIAIGLSSMLFGSKLNQGVDFVGGRSY 733

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V     V    V+ +L ++   + S +         +++  +       T V + +K+ 
Sbjct: 734  QVRFANDVSAQDVKQDLTAIFGSENSPEVKTFGGENQLKITTKYKVDETGTEVDDEIKEM 793

Query: 642  I-------------------TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
            +                           I  +  VGP I+ ++ +     V+ S + + +
Sbjct: 794  LFNGLSKFLPSDMKYVDFVDGAEDKTVGIMQSVKVGPTIADDIKKDSFWAVLGSLVVVFL 853

Query: 683  YIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVN 735
            YI +RF+ W F+LGA+T +  D+   LG F+L      F +E N   +AA+LT+IGYS+N
Sbjct: 854  YILLRFRRWQFSLGAVTAVFHDVLIVLGIFSLAWKYVPFTMEINQAFIAAILTVIGYSLN 913

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            D VVV+DR+R+ M           +++ ++N TL R++ TS+   + +L + ++GG  I 
Sbjct: 914  DTVVVFDRIREFMDE-RPDWKLSKVVNAALNSTLSRTLNTSLTTLVVLLAIFIFGGESIR 972

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             F   +  G++V   SS+FIA PI+         N  +
Sbjct: 973  GFMFALIVGVIVGTYSSMFIATPIMFDTIKKGDINKGL 1010



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 8/184 (4%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
             +  ++ GLDL+GG +++L+V   D + G      +   +F K         +  Q   
Sbjct: 88  AKEKELNKGLDLKGGINVILQVSVKDILKGLANNTEN--ETFNKALERADELQKDAQEDY 145

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
             SF  +       +  T  L+  ++ +                    + +N I + +  
Sbjct: 146 VESFFRAFD-----ELNTEGLKLADTDIFYTAALREEFKKETFNTPDDVVKNVIRRKVDQ 200

Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           +I  + E++ +RIDQ G+++  IQR   S RILI+LPG +D  R+ +LL  TA++ F K 
Sbjct: 201 SIVSAKEVLNKRIDQFGVTQPNIQRLGTSGRILIELPGAKDVIRIEKLLQRTAELQFWKT 260

Query: 218 LPNN 221
             +N
Sbjct: 261 YNDN 264


>gi|254495269|ref|ZP_05108193.1| protein-export membrane protein SecD [Polaribacter sp. MED152]
 gi|85819623|gb|EAQ40780.1| protein-export membrane protein SecD [Polaribacter sp. MED152]
          Length = 990

 Score =  353 bits (906), Expect = 6e-95,   Method: Composition-based stats.
 Identities = 197/826 (23%), Positives = 378/826 (45%), Gaps = 59/826 (7%)

Query: 55  HLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIA 112
           ++ +     + +N  +    + LRS + K G+   ++++I N  +I +    ++  E + 
Sbjct: 175 NITVRETLQEEINSSIGTAFEVLRSRIDKFGVTQPNIQRIGNSGRIQIELPGAKDIERVT 234

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
             +T   +     +  + +          +++ +L  +++ +    + +Q         D
Sbjct: 235 KLITSKAELQFWGVYTNAEIQNFFFAANSKVAEMLKDDSVLEQEQDSAKQ-----DDIDD 289

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP------------- 219
            +G    + +   S    +     Q   +L  ++ +   +    V               
Sbjct: 290 LLGEEADSTKVQKSLFTYLYPNVAQSQQQLSSVVASARVLDTAMVNDLLSKKEVRALLPN 349

Query: 220 --------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                    + K         +      +    DK  I G  +  A   FD     P V 
Sbjct: 350 EIKYAKFLWDYKAVEGADGAEIISLYAIKGNRNDKPTIEGDVILDAAQVFDQLNK-PEVS 408

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGI 330
           ++ +  G +++ ++T DN+G  +AVVLD  V TAP +NQ I  G+  ISG + T+  A  
Sbjct: 409 MTMNSSGTKQWAKMTADNVGNFVAVVLDDYVYTAPSVNQVISGGRTSISGGSMTVAEAED 468

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           ++ +L+AG LP    I++   VG  LG ++I     +    ++L++L+MI+ YGK G  A
Sbjct: 469 ISTVLKAGKLPATARIIQIEVVGPSLGQEAIDASFLSFGLAIILVLLWMILYYGKAGAFA 528

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
           + ++ +N++    +L+   A LTLP IAGI+L IG++VD+N+++ ERI+E   K + +  
Sbjct: 529 NVALIVNILFIFGVLASFNAVLTLPGIAGIILTIGMSVDANVIIFERIKEGLFKKKGLKQ 588

Query: 451 SLDM--GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
           S++       A S I D+NIT L+  ++L+ FG G ++GFA+T+ + I  S+FTA+ I R
Sbjct: 589 SVEEGFSIKGALSAIIDANITTLLTGIILYVFGTGPIKGFALTLMIGIATSLFTAVFITR 648

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
            ++   +      + + +           I ++F++ R     IS    I  +  +F+ G
Sbjct: 649 LLIDSSVNKGSNLTFNTSFSKG---WFQNINVEFLKKRKIAYIISGTIIIGGLISIFSIG 705

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           L  G+DFKGG    V  ++ ++ + V   L+         + +       +   Y+  + 
Sbjct: 706 LKQGVDFKGGRSYVVRFDQDMNATEVAGTLKDAFGSAPEVKTYGQANQLKITTVYKIEEE 765

Query: 629 V------AQTRVLEMVKKKITEIVPLSTIQNTEIVG----------PKISRELIRKGIVG 672
                   Q  +   +K  + +    +     E  G          P I+ ++    +  
Sbjct: 766 GTEVDEEVQNTLFTGLKPYLGDTTYENFKPGFEKQGAGVMSFMKVEPTIADDIKTSALYA 825

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725
           V  S I + +YI +RF+   F+LGA+  +  D+   LG F++      F +E   + +AA
Sbjct: 826 VFGSLIVVFLYILLRFRKVSFSLGAVIAVFHDVLIVLGVFSITYSFMPFDMEIGQSFIAA 885

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +LT++GYS+ND VV++DR+R+    Y     +  ++D +++ TLGR++ TS+   + +L 
Sbjct: 886 ILTVVGYSLNDTVVIFDRIREFAGSYPN-WKYSKVVDSALSSTLGRTINTSLTTLLVMLA 944

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++GG  I  F   +  G+VV   SS+F+A PI+        K  
Sbjct: 945 IFLFGGDSIKGFMFALIVGVVVGTYSSLFVATPIMYDSSKKELKKK 990



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 41/193 (21%), Positives = 78/193 (40%), Gaps = 26/193 (13%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              ++LGLDL+GG + +L+V   + +        +   +                    L
Sbjct: 82  DKEMNLGLDLKGGINAILQVSVKEVLKSLSNDSKNVAFNT------------------AL 123

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVD-PKKNLLVTTTEKEISIVLSQ------NNID 153
             AD R KE+  + + LF +               +  T      I   +        + 
Sbjct: 124 ENADERQKESNLNYLDLFFEEFQKVAGDTKLSDPSIFGTKALSEKISFDEANITVRETLQ 183

Query: 154 QVISHAIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
           + I+ +I  + E++R RID+ G+++    +   S RI I+LPG +D  R+ +L+ + A++
Sbjct: 184 EEINSSIGTAFEVLRSRIDKFGVTQPNIQRIGNSGRIQIELPGAKDIERVTKLITSKAEL 243

Query: 213 SFHKVLPNNSKKG 225
            F  V  N   + 
Sbjct: 244 QFWGVYTNAEIQN 256


>gi|313159379|gb|EFR58743.1| membrane protein, putative [Alistipes sp. HGB5]
          Length = 1008

 Score =  353 bits (905), Expect = 7e-95,   Method: Composition-based stats.
 Identities = 210/847 (24%), Positives = 365/847 (43%), Gaps = 74/847 (8%)

Query: 56   LVLE---VDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQ--IQNKITLSFADSR 106
            + LE    D +  +            + LRS +   G+   ++ +    ++I +     +
Sbjct: 164  ITLESSDADVEKILKRETDAAIAASFNVLRSRIDHFGVTQPNIMRLPNSHRILVELPGVK 223

Query: 107  FKENIADKVTLFLQG-------VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
              + + D +                 L      +  +     E              + A
Sbjct: 224  EPQRVRDLLQGTASLEFWLTYDAREVLPALAAADKFIKAELSEAPAAGQPEVASVEAAAA 283

Query: 160  IEQSMEIIRQRIDQIGI----SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
                       + +IG                R    L    DP          A  +  
Sbjct: 284  AGTPAGEAEGLLAEIGSDTTAVAEAEHTDRYDRAKNPLFAVLDPGFAGGAAIGAAYKADM 343

Query: 216  KVLPNNSKKGFMFGVRFLRDS------------------DGNQYLVEDKVEISGIHLNGA 257
              +        +  +     +                         + K  + G  +  A
Sbjct: 344  AAVNEYLANPAVRELFPADIAFKWGVKGDDKIDGRFYLYAIRISTPDGKAPLDGSVVTEA 403

Query: 258  TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
               +  +    VV +S +  G + +  +T +NIGK +A+VLDG V +AP +N  I  G +
Sbjct: 404  REQYAQRGANAVVSMSMNGEGTQEWARLTGENIGKCIAIVLDGYVYSAPRVNTKIDKGSS 463

Query: 318  QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
            +ISG+FTI+ A  LA +L +G +P    I+++  VG  LG +SI  G  + +   +L++L
Sbjct: 464  EISGDFTIQEAKDLANVLNSGKVPAPAKIIQDTVVGPSLGQESINAGMLSFLIAFILVLL 523

Query: 378  FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
            +M + Y   G ++D ++  NV L + +L   GA LTLP IAGIVL +G+AVD+N+++ ER
Sbjct: 524  YMGLFYKTAGWMSDIALLTNVFLLMGVLVSFGAVLTLPGIAGIVLTMGMAVDANVIIYER 583

Query: 438  IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
            I+EE R  + +  ++  GFS+AYS I D N+T +I  +VLF FG G V+GFA T+ + I+
Sbjct: 584  IKEELRGGKGLSLAIKDGFSKAYSAIIDGNLTTIITGIVLFIFGNGPVQGFATTLIIGII 643

Query: 498  ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
             S F+A+ I R ++ +I+      S        F          F+R R     +++   
Sbjct: 644  TSFFSAVFITRLLIEWIVAKWGNISFSRKWSENFL---TNTHFDFIRVRKVAYTVAVALL 700

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD---------ISF 608
              S       GLN G +F GG    +  ++PV    VR NL  +                
Sbjct: 701  ALSCISFVARGLNLGAEFTGGRAYVIRFDKPVSAEEVRQNLGQVFAQHADADASAISFEV 760

Query: 609  QNFDGEKNFLVRLQYQPGD--SVAQTRVLEMVKKKITEIVPLSTIQNT------------ 654
            + +  E    +  QY+  D    A   V +++   +  +                     
Sbjct: 761  KQYGNENQMRIVTQYRYDDTSDEATAEVEQIIYDAMKSLYSYDISFEQFRNTQTDVNGIL 820

Query: 655  --EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              + +GP I++++    I  V+ S IA+ +YI  RF +W +A GA   L ++    +G F
Sbjct: 821  TADKIGPSIAKDMTWNAIYSVLFSLIAIGLYITFRFKRWQWASGATIALAVNALFIIGLF 880

Query: 712  AL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            ++      F +E N   +AA+LT+IGY++ND VVV+DR+R+ + +Y    + ++ ++ +I
Sbjct: 881  SMLYGFVPFNLEVNQAFIAAILTIIGYAINDTVVVFDRIREYLGMYPKR-NLKENVNNAI 939

Query: 766  NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            N TL R++ TS    +++L +  +GG  I  F   +  G++V   ++IFIA PI   +  
Sbjct: 940  NSTLSRTINTSGTTLVTLLAIFFFGGETIRGFIFALTVGVIVGTVATIFIATPIAYDLMV 999

Query: 826  WRAKNAR 832
             RAK  +
Sbjct: 1000 KRAKLDK 1006



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 13/180 (7%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
           +  ++LGLDL+GG +++LEV  +D +        ++  +F++       ++++  +K   
Sbjct: 78  EKELNLGLDLKGGMNVMLEVQVEDVIKALAGDSQND-PAFVEAIAEANAALKEGTSK--- 133

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
                        +++         ++ D K   L ++      I+       +    AI
Sbjct: 134 --DYISDFVKAYQRLSNGGSLAAVFVSPDRKDITLESSDADVEKIL------KRETDAAI 185

Query: 161 EQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
             S  ++R RID  G+++  I R   SHRIL++LPG ++P R+R LL  TA + F     
Sbjct: 186 AASFNVLRSRIDHFGVTQPNIMRLPNSHRILVELPGVKEPQRVRDLLQGTASLEFWLTYD 245


>gi|325104766|ref|YP_004274420.1| protein-export membrane protein SecD [Pedobacter saltans DSM 12145]
 gi|324973614|gb|ADY52598.1| protein-export membrane protein SecD [Pedobacter saltans DSM 12145]
          Length = 988

 Score =  353 bits (904), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 202/824 (24%), Positives = 368/824 (44%), Gaps = 59/824 (7%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMR--QIQNKITLSFADSRFKENIAD 113
                ++        +     LR+ + K G+   +++  +  N+I +       +E +  
Sbjct: 164 AKVKTYLEKQATSAIERSFNILRTRIDKFGVTQPNIQLQEGSNRILVELPGVTDQERVRK 223

Query: 114 KVTL-----------------FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
            +                    +Q +N+ L     K           ++  ++     ++
Sbjct: 224 LLQGSAKLEFYETFDNHEIFPLIQNINNILAAKQPKEATKKAEATTTAVDTTKGAKPALL 283

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ-------------LPGEQDPSRLR 203
           S   + + +   + +  +  +      L                         +D +++ 
Sbjct: 284 SAKKDSTSKDSSENMAALAKANPLFSVLSPATYQGANGEQGLRPGPVVGYVALKDTAKVN 343

Query: 204 QLLGTTA--KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           + L       +    V      K      +           + +   + G  ++ A  +F
Sbjct: 344 EYLREPEIKAVIPPNVKLMWGVKSISKDAKVYELYAIKGSGINNGAVLEGDVISNAREDF 403

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV--------LDGRVLTAPVINQAIP 313
           D K   P V +S +  GAR +  +T    G P            LD  V TAP +   IP
Sbjct: 404 DQKG-NPEVTMSMNSTGAREWKRITAAAAGDPRNEDDNKCIAIVLDDMVYTAPRVGGEIP 462

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
           +G + ISGNFT+E    LA +L+AG LP    IV E  VG  LG +SI KG  + VAGL+
Sbjct: 463 NGVSSISGNFTVEETKDLANVLKAGKLPAPAKIVGEYVVGPTLGKESIEKGVISSVAGLI 522

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           +++LFM+  Y + G++A+F++  N+   + +++ LGA  TLP IAG+VL IG+AVD+N+L
Sbjct: 523 VVLLFMVFYYNRSGMIANFALLFNMFFLVGIMASLGAVWTLPGIAGLVLTIGMAVDANVL 582

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
           + ERI+EE    +++  ++  GF  +YS I DS IT LI  ++L   G G + GFA+T+ 
Sbjct: 583 IYERIKEELELGKNLKTAVVDGFKNSYSAILDSQITTLIVGIILLITGTGPIYGFAVTLV 642

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
           + I +S+FTAI I R ++   +   K   +  +     F       I F++ R     IS
Sbjct: 643 IGIFLSIFTAIFITRIVIDNRLEKGKDLPLYTSFTKNLFKGSP---IDFVKDRKKYYIIS 699

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +  I  +  +   G +YG+DF+GG    V  N+ +    VR  L      D       G
Sbjct: 700 SVIIIAGLASMLIKGFSYGVDFQGGRTYVVDFNKEISTIDVREALTKSFENDAPEVKSYG 759

Query: 614 EKNFLVRLQYQPGDSVAQTR-VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
               +        +S    + V   +   +  +     I++ + VGP ++ ++    I  
Sbjct: 760 SGVRITTAYLIEDNSDQAEKTVATKLNDGLKTLNTPYEIKDAQKVGPTVANDIKVSAIWS 819

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725
           V+ +   + +Y++IRF+   F +  I  L+ D+   L  F++      F ++ + T +AA
Sbjct: 820 VLAAIAGIFLYVYIRFRKVSFGIATIIALLHDVLIVLAIFSIFDGILPFSLDIDQTFIAA 879

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           +LT+ GYS+ND VV++DR+R+ +        +   +I+ ++N TL R+V T M+    ++
Sbjct: 880 ILTVAGYSINDTVVIFDRVREYLSDERNRNQNMATIINNALNSTLSRTVVTGMSTIFVLI 939

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + ++GG ++  F+  M  GI+V   SS+F+A P+++     + 
Sbjct: 940 ILFIFGGEILRGFSFAMLIGIIVGTYSSLFVATPVVVEFIRGKK 983



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 99/241 (41%), Gaps = 8/241 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +   +   ++ + D+ +            +    G+   +         K  ++   + I
Sbjct: 436 NEDDNKCIAIVLDDMVYTAPRVGGEIPNGVSSISGNFTVEETKDLANVLKAGKLPAPAKI 495

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
               +VGP + +E I KG++  +   I +L+++   +     + A   L+ ++   +G  
Sbjct: 496 VGEYVVGPTLGKESIEKGVISSVAGLIVVLLFMVFYYN-RSGMIANFALLFNMFFLVGIM 554

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A  G  + L  +A ++  IG +V+  V++Y+R+++ ++L     + +  +      +   
Sbjct: 555 ASLGAVWTLPGIAGLVLTIGMAVDANVLIYERIKEELEL---GKNLKTAVVDGFKNSYSA 611

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + + +   I  + + + G   I  FA+ +  GI      SIF A  I   + D R +  
Sbjct: 612 ILDSQITTLIVGIILLITGTGPIYGFAVTLVIGI----FLSIFTAIFITRIVIDNRLEKG 667

Query: 832 R 832
           +
Sbjct: 668 K 668



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 90/222 (40%), Gaps = 27/222 (12%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQI 94
             + +  I+LGLDL+GG ++ +E+D    +       +D   +      +     + ++ 
Sbjct: 67  QYVKEREIALGLDLKGGMNVTMEIDLSALLKSLANNPTDANFNQALENAQEKLKTNSKEG 126

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV-----LSQ 149
                               V+LF+             +   T        +       +
Sbjct: 127 -------------------LVSLFVSEFEKLSPNVKLASFYSTKDNSSDLKIDDSNAKVK 167

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGT 208
             +++  + AIE+S  I+R RID+ G+++  IQ    S+RIL++LPG  D  R+R+LL  
Sbjct: 168 TYLEKQATSAIERSFNILRTRIDKFGVTQPNIQLQEGSNRILVELPGVTDQERVRKLLQG 227

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           +AK+ F++   N+     +  +  +  +   +   +     +
Sbjct: 228 SAKLEFYETFDNHEIFPLIQNINNILAAKQPKEATKKAEATT 269


>gi|167751995|ref|ZP_02424122.1| hypothetical protein ALIPUT_00237 [Alistipes putredinis DSM 17216]
 gi|167660236|gb|EDS04366.1| hypothetical protein ALIPUT_00237 [Alistipes putredinis DSM 17216]
          Length = 1008

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 217/840 (25%), Positives = 381/840 (45%), Gaps = 72/840 (8%)

Query: 61   DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADK 114
            + +  +        D     LRS +   G+   ++++    ++I +     +  E +   
Sbjct: 173  EVEKILQEETDAAIDASFNILRSRIDHFGVTQPNIQRLPNSHRILVELPGVKEPERVRKL 232

Query: 115  VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ-------SMEII 167
            +             + +    +   ++ +   L+    D  +   + +       + +  
Sbjct: 233  LQGTASLEFWTTYNNTELVRALEQADQLLRDELAAGATDAAVEETLTEEQPTAAGTEDTT 292

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDP--SRLRQLLGTTAKMSFHKVLPNNSKKG 225
               I ++  +    +   S     +   E++P  S L    G  A +    V    +  G
Sbjct: 293  ESLIAEVQNNAPAAEEAASASGASRYTREENPLFSLLNPYDGGGAVVGSVAVADTATVAG 352

Query: 226  F----------------MFGVRFLRDSDGN-------QYLVEDKVEISGIHLNGATANFD 262
            +                 +G++    ++G            + K  + G  +  A   + 
Sbjct: 353  YLRMDAVRELLPSDVRFEWGIKGEPQNNGRFSLYALKVSTPDGKAPLDGSVIVDARETYA 412

Query: 263  PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
             +  +  V +S +  G + +  +T DNIG+ +A+VLDG V +APV+ Q I  G ++ISGN
Sbjct: 413  ERGAEAKVSMSMNSEGIQDWARLTGDNIGRCIAIVLDGYVYSAPVVRQKIEGGSSEISGN 472

Query: 323  FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            FTI+ A  LA +L++G +P    I+++  VG  LG +SI  G  + V   VL++L+M + 
Sbjct: 473  FTIQEAKDLANVLKSGKVPAPARIIQDTVVGPSLGQESINAGILSFVLAFVLVLLYMGLY 532

Query: 383  YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
            Y   G ++D ++  NV L L +L   GA LTLP IAGIVL +G+AVD+N+++ ERI+EE 
Sbjct: 533  YKTAGWLSDIALLCNVFLLLGVLVSFGAVLTLPGIAGIVLTMGMAVDANVIIYERIKEEL 592

Query: 443  RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
            R  + +  ++  GFS+AYS I D N+T +I  +VLF FG G V+GFA T+ + IL S+F 
Sbjct: 593  RGGKGLSLAIKDGFSKAYSAIIDGNLTTIITGIVLFIFGNGPVQGFATTLIIGILTSLFC 652

Query: 503  AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
            +I I R ++  ++      S           +       F+        + I+    S  
Sbjct: 653  SIFITRLLIEGVVNKWGKISFSRKWSEN---LMGNAHFDFLGKSKISYIVMIVVLAVSCV 709

Query: 563  LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD-------ISFQNFDGEK 615
                 GLN G +F GG    +  +RPV    VR  L+ +  G           + +  E 
Sbjct: 710  SFAVRGLNMGAEFTGGRAYVIRFDRPVQAEEVRMKLQDVFSGYEDAANVSFEVKQYGNEN 769

Query: 616  NFLVRLQYQPGD--SVAQTRVLEMVKKKITEIVPLSTIQNT--------------EIVGP 659
               +  QY+  D    A + V  ++   +  +                       + +GP
Sbjct: 770  QMRIVTQYKYDDTSDEATSEVDRILYDALHGLYGYPITFENFRNTQNDINGILTADKIGP 829

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL----- 713
             I++++    I  V+ S IA+ +YI +RF KW +A GA T L  +    +G F+L     
Sbjct: 830  SIAKDMTWGAIWSVLFSLIAIGLYISLRFKKWQYATGATTALAFNALVVIGVFSLCYGWL 889

Query: 714  -FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             F +E N   +AA+LT+IGY++ND VVV+DR+R+ + LY      R+ ++ ++N TL R+
Sbjct: 890  PFNLEVNQAFIAAILTIIGYTINDTVVVFDRIREYLVLYPKR-DLRENVNNALNATLSRT 948

Query: 773  VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + TS    +++L +  +GG  I  F   +A G+VV   S++F+A PI   +        +
Sbjct: 949  INTSGTTLVTLLAILFFGGETIRGFIFALALGVVVGTLSTLFVATPIAYGLMKREGLGKK 1008



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 24/216 (11%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFL-----QMYSDELRSFLKKEGIGVFSMRQIQ 95
           +  I+LGLDL+GG +++LEV  +D +             +E  +   K       +++  
Sbjct: 80  EKEINLGLDLKGGMNVMLEVQVEDVLKALAGDSAHDPMFEEAIARANKA------LKEGT 133

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           N     FA          +V+         ++ D K     ++  +   I+       + 
Sbjct: 134 NNYIGEFA------KAYREVSGGAPLAALFVSPDRKDITPNSSDSEVEKIL------QEE 181

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
              AI+ S  I+R RID  G+++  IQR   SHRIL++LPG ++P R+R+LL  TA + F
Sbjct: 182 TDAAIDASFNILRSRIDHFGVTQPNIQRLPNSHRILVELPGVKEPERVRKLLQGTASLEF 241

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
                N      +     L   +      +  VE +
Sbjct: 242 WTTYNNTELVRALEQADQLLRDELAAGATDAAVEET 277


>gi|225011913|ref|ZP_03702351.1| protein-export membrane protein SecD [Flavobacteria bacterium
           MS024-2A]
 gi|225004416|gb|EEG42388.1| protein-export membrane protein SecD [Flavobacteria bacterium
           MS024-2A]
          Length = 985

 Score =  352 bits (903), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 208/808 (25%), Positives = 364/808 (45%), Gaps = 48/808 (5%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123
           ++  +    + LR  + K G+   +++++    +I +    ++  E + + +    Q   
Sbjct: 185 IDESIVSAFEVLRKRIDKFGVTQPNIQRLGTSGRILVELPGAKDVERVQNLLQSTAQLEF 244

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +        L+    E    +  + +    V+    + + EI     D       +   
Sbjct: 245 WE--TYKNDELITFLVEANQYLKTTNDKSKAVVEEEKDDASEIDDLLADVSAQDSISASG 302

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                  I   G Q    L Q     +++    +     +K      R+++ + G     
Sbjct: 303 SNPILDRIVGQGFQGGPVLAQFASRDSELILDYLNQPQVRKLLPSEYRYIQFAWGKPVAN 362

Query: 244 EDKVEI-------------SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD-- 288
            D VE+             SG  +  A   FD   +  V                 +   
Sbjct: 363 SDVVELYALKSNRDNLAPLSGGVVVDALQTFDQVGNAAVSMQMDSRGARIWESMTGKAFK 422

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                  V+ D       V +  I  G+++I+GNFT+  A  LA +LRAG LP    I++
Sbjct: 423 EASNIAIVLDDIVYSAPGVSSGPIAGGRSEITGNFTLNEAIDLANVLRAGKLPASAEIIQ 482

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
              VG  LG ++I  G  + +  L+ ++ +MI  YG  G+ AD ++ LN++L   +L+ L
Sbjct: 483 SEIVGPSLGQEAIEAGIYSFIIALIFVLGWMIFYYGSSGIYADIALILNILLIFGILAGL 542

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA LTLP IAG+VL IG++VD+N+L+ ER+REE  K + +  ++  GF+ A S+I D+NI
Sbjct: 543 GAVLTLPGIAGVVLTIGISVDANVLIFERVREELSKGKGIRKAIADGFNNALSSILDANI 602

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T  +  ++LF FG G ++GFA T+ + I  S+FTAI I R ++       K  S      
Sbjct: 603 TTGLTALILFIFGTGPIKGFATTLLIGIGTSLFTAIFITRILVDSRNEKGKDVSFSTKAT 662

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    I I F++ R     +S +  + S+  L   GLN G+DF GG    V   +P
Sbjct: 663 KGLLS---NINISFLQRRKVAYIVSSILILVSLASLTFQGLNQGVDFVGGRSYTVRFEQP 719

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG------DSVAQTRVLEMVKKKI 642
           V+ + + + L +      + + F  +    +  +Y+        D   Q ++   ++  +
Sbjct: 720 VNPTEIGAVLSNEFGSAEA-KTFGEDNQLKITTKYKVDVEGIAVDEEIQNKLFTALQSYL 778

Query: 643 TEIVPLSTIQNTEIV-----------GPKISRELIRKGIVGVIISAIAMLIYIWIRF-KW 690
            + +      N               GP I+ ++     + VI S I + +YI +RF KW
Sbjct: 779 PDGMSYDNFVNGSSQKEIGIMSSIKVGPTIADDIKSNSFLAVIGSLIVVFLYILLRFQKW 838

Query: 691 YFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            F+LGA+  +  D+   LG F++      F +E N   +AA+LT+IGYS+ND VVV+DR+
Sbjct: 839 QFSLGAVVAVFHDVLIVLGIFSITYTFMPFSMEINQAFIAAILTVIGYSLNDTVVVFDRI 898

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ +  +T    F   +D ++N TL R++ TS+   I +L + ++GG  I  F   +  G
Sbjct: 899 REFLAEHTK-WEFNTTVDAALNSTLSRTLNTSLTTLIVLLAIFIFGGESIRGFMFALIIG 957

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++V   SS+FIA P++      +A   +
Sbjct: 958 VLVGTYSSVFIATPVMYDTQKKKALEQK 985



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 20/200 (10%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
                ++ GLDL+GG +++L++   D ++G  +   + + +  K         +   +  
Sbjct: 79  AKDKELNKGLDLKGGINVILQISIRDILSGLAENTRNPIFN--KALDEADILQKSTDDPY 136

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
             SF                   V S   +         T   EI+  ++      V+  
Sbjct: 137 IESFF-------------NAFDAVKSGEKLASPDIFANRTLSDEINFDMTDQETQVVVRR 183

Query: 159 AIEQSM----EIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
            I++S+    E++R+RID+ G+++  IQR   S RIL++LPG +D  R++ LL +TA++ 
Sbjct: 184 KIDESIVSAFEVLRKRIDKFGVTQPNIQRLGTSGRILVELPGAKDVERVQNLLQSTAQLE 243

Query: 214 FHKVLPNNSKKGFMFGVRFL 233
           F +   N+    F+      
Sbjct: 244 FWETYKNDELITFLVEANQY 263


>gi|149369780|ref|ZP_01889631.1| protein-export membrane protein SecD/SecF [unidentified eubacterium
           SCB49]
 gi|149356271|gb|EDM44827.1| protein-export membrane protein SecD/SecF [unidentified eubacterium
           SCB49]
          Length = 1019

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 197/819 (24%), Positives = 356/819 (43%), Gaps = 66/819 (8%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123
           ++  +    + LR  + K G+   +++++    +I +    ++    + D VT   Q   
Sbjct: 182 IDESITSAFEVLRKRIDKFGVTQPNIQRLGESARILVELPGAKDVSRVTDLVTKTAQLEF 241

Query: 124 SKLNVDPKKNLLVTTTEKEIS---------------------IVLSQNNIDQVISHAIEQ 162
             +    +    V   E +I                            +         E+
Sbjct: 242 WDVYKSDEIAGFVMQAESKIREINKAKNPVKEEVEAVQEEVEEAAQDGDDSLDDLLGGEE 301

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK----------- 211
             E       +  I+   ++   S   +I    E+D   + + L                
Sbjct: 302 VAEEEVDASVEYPITSKMVRPGVSGSPIIATFYEKDADEILEYLNMPQVRSLLKGDMRYA 361

Query: 212 --MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
             +                    + +    +   +D   +SG  +  A   +       V
Sbjct: 362 NFVWEQPTTLEVINADGEEEEIKVVNLYALKGNKQDVPPLSGDVVVDALQTYGASGEVAV 421

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN---QAIPSGKAQISGNFTIE 326
                 +          + N+ +    ++   V+ +         IP G + I+GNF+I 
Sbjct: 422 SMQMNGKGAKVWQEMTNQANLNQSQIAIVLDDVVYSAPGVTSPGGIPGGNSSITGNFSIL 481

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +LRAG LP    I++   VG  LG +++  G  +    L+ ++L+MI+ YGK 
Sbjct: 482 EAQDLANVLRAGKLPASAEIIQGEVVGPTLGKEAVRSGMLSFGIALLFVLLWMILYYGKA 541

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G  AD ++ +N++    +L+ LGA LTLP IAG+VL IG++VD+N+L+ ERI+EE  K +
Sbjct: 542 GAFADVALAVNILFIFGVLAGLGAVLTLPGIAGVVLTIGMSVDANVLIFERIKEEMYKGK 601

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   ++  GFS A S+I D+NIT  +  ++L  FG G ++GFA T+ + IL S+FTAI I
Sbjct: 602 SQKDAIKDGFSNALSSILDANITTGLTGIILLVFGTGPIKGFATTLLIGILTSLFTAIFI 661

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
            R  +    +  K           F      + I F+  R     IS +  + S+  LFT
Sbjct: 662 TRLFVDRYTKNGKSLDFSTGLTKNFLR---NVNIDFLGKRKMAYIISTVLIVVSLGSLFT 718

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRL 621
           +GLN G+DF GG    V  ++ VD + V  +L  +     +       +      + V  
Sbjct: 719 NGLNQGVDFVGGRTYTVRFDQDVDANKVEESLVEVFGSAEAKTYGGDNQLKITTKYKVNE 778

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV-----------GPKISRELIRKGI 670
                D   + ++   +K  +   +      + +              P I+ ++ +  +
Sbjct: 779 TGTAIDQEIENKLFTGLKPYLPGTMTFEAFTSDDATKVAGRMESYKVSPSIADDIKKSSV 838

Query: 671 VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAV 723
             ++ S + + +YI +RF +W F+LGA++ +  D+   LG F+L      F +E + + +
Sbjct: 839 WAILGSLLVVFLYILLRFRRWQFSLGAVSAVFHDVIIVLGIFSLTYSFMPFSMEIDQSFI 898

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA+LT+IGYS+ND VVV+DR+R+    + TS     +I++++N TL R++ TS+   I +
Sbjct: 899 AAILTVIGYSLNDTVVVFDRIREYFNEH-TSWPLGKVINEALNSTLSRTLNTSLTTLIVL 957

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           L + ++G   I      +  G++V   SS+FIA P++  
Sbjct: 958 LSIFLFGAESIKGLIFALIIGVLVGTYSSLFIATPVMFD 996



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/251 (19%), Positives = 101/251 (40%), Gaps = 11/251 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +     ++ S +   L+ +        +  G       +        AQ     +   K
Sbjct: 435 EMTNQANLNQSQIAIVLDDVVYSAPGVTSPGGIPGGNSSITGNFSILEAQDLANVLRAGK 494

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +        I   E+VGP + +E +R G++   I+ + +L+++ + +       A   L 
Sbjct: 495 LPASAE---IIQGEVVGPTLGKEAVRSGMLSFGIALLFVLLWMILYYG-KAGAFADVALA 550

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           ++I    G  A  G    L  +A V+  IG SV+  V++++R+++ M       S +D I
Sbjct: 551 VNILFIFGVLAGLGAVLTLPGIAGVVLTIGMSVDANVLIFERIKEEMY---KGKSQKDAI 607

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
               +  L   +  ++   ++ + + V+G   I  FA  +  GI+    +S+F A  I  
Sbjct: 608 KDGFSNALSSILDANITTGLTGIILLVFGTGPIKGFATTLLIGIL----TSLFTAIFITR 663

Query: 822 FIYDWRAKNAR 832
              D   KN +
Sbjct: 664 LFVDRYTKNGK 674



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/196 (23%), Positives = 91/196 (46%), Gaps = 12/196 (6%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96
           +   +  ++ GLDL+GG +++L+V   D + G      D   +            +  Q+
Sbjct: 74  NTAKEKELNKGLDLKGGINVILQVSVKDILQGLANNTKDPAFNL--ALKNADELQKSSQD 131

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
               SF  +      A      L   +   N + + ++ +     E+ +++     ++ I
Sbjct: 132 TYLQSFFTAFD----ALDGENSLASPDIFFNKNLEDDISLDQPNDEVKVII-----ERKI 182

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
             +I  + E++R+RID+ G+++  IQR   S RIL++LPG +D SR+  L+  TA++ F 
Sbjct: 183 DESITSAFEVLRKRIDKFGVTQPNIQRLGESARILVELPGAKDVSRVTDLVTKTAQLEFW 242

Query: 216 KVLPNNSKKGFMFGVR 231
            V  ++   GF+    
Sbjct: 243 DVYKSDEIAGFVMQAE 258


>gi|213962437|ref|ZP_03390699.1| putative protein-export membrane protein SecD [Capnocytophaga
           sputigena Capno]
 gi|213954763|gb|EEB66083.1| putative protein-export membrane protein SecD [Capnocytophaga
           sputigena Capno]
          Length = 997

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 198/812 (24%), Positives = 362/812 (44%), Gaps = 52/812 (6%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
           V+  +    + LR  + K G+   +++++ N  +I +    ++    +   +    Q   
Sbjct: 187 VDESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQALLQSTAQLEF 246

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +   +      +    +++       +  +    A  QS       +      +S   +
Sbjct: 247 WETYKNTDVFPYLQALNEQLKSTAKNTDKVKDTLAAATQSGSSAIDSLLTDVKKDSVPTQ 306

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGN 239
                  +    +  P+    +L   +     +V    +           ++++R + G 
Sbjct: 307 KTDGANPLFDLFKSAPNYESPVLFAVSLKDTAQVNSYLNSSEAKRLIPASLQYVRFAWGK 366

Query: 240 Q-------------YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                            ++   ++G  +           ++P V +  D  GAR +  +T
Sbjct: 367 PDKKTSLIELYALRGNRDNTPPLTGNVVTQ-AEQTYDVRNQPAVSMQMDGKGARIWEVLT 425

Query: 287 RDNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343
                +   +     +       V   AI  G+++I+G+FT+  A  LA +LRAG LP  
Sbjct: 426 GKAFSQNTNIAIVLDNIVYSAPGVTTGAISGGRSEITGHFTLNEAVDLANVLRAGKLPAS 485

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
            +IV+   VG  LG ++I  G  + +   + I  +MI  YG+ G+ AD ++  N++L   
Sbjct: 486 ADIVQSEIVGPSLGQEAIDSGMNSFLIATIFIFAWMIFYYGRAGVYADLALVFNILLIFG 545

Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
           +L+ +GA LTLP IAGIVL IG+AVDSN+L+ ER +EE RK +++  ++  GF  A S+I
Sbjct: 546 VLASIGAVLTLPGIAGIVLTIGMAVDSNVLIFERSKEELRKGKNINQAVVDGFKHALSSI 605

Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            DSNIT  +  ++L FFG G ++GFA T+ + I  ++F+AI I R  + + +  K   + 
Sbjct: 606 LDSNITTALTALILLFFGSGPIQGFATTLLIGIATTLFSAIFITRLFIDYSVEKKHSLTF 665

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                         I + F+  R  G   SI+ S+  I  LFT GL+ GIDF GG    +
Sbjct: 666 STPITKN---WFSNINLNFIGKRKIGYAFSIILSVIGIISLFTRGLDQGIDFVGGRTYQI 722

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMV 638
                V+ + +   L+               +      + V+ +    D+  Q  + + +
Sbjct: 723 RFEHEVNPTQIADALKLTLGNVEVKTFGAPNQVKISTKYKVQEESTEVDNEVQQLLFKGL 782

Query: 639 KKKITEIVPLSTIQNTEIV-----------GPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +K + E     +                  GP I+ ++       VI S I + +YI  R
Sbjct: 783 QKFLPEGTSFDSFAKATSTDKIGIMQSMKVGPTIAEDIKSSAFWSVIGSLIVIGLYILFR 842

Query: 688 FK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           F+ W F++GAI +   D+   LG ++L      F +E +   +AA+LT++GYS+ND V++
Sbjct: 843 FRKWQFSMGAIVSSAHDVLMVLGIYSLTYSIMPFNMEIDQAFIAAILTVVGYSLNDTVII 902

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           YDR+R+ M+    S   R+ I+ ++N TL R++ TS      ++ + ++GG  +  F   
Sbjct: 903 YDRIREVMREPHWS---REKINHALNTTLSRTLNTSFTTLAVLVTIFIFGGETLRGFMFA 959

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           M  G+ +   SSIF+AAP++       A + +
Sbjct: 960 MIIGVFIGTYSSIFVAAPLIYDTVKDEADHTK 991



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/194 (23%), Positives = 94/194 (48%), Gaps = 24/194 (12%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
           +  ++ GLDL+GG +++L++   D + G      D + +                   +L
Sbjct: 85  EKELNRGLDLKGGINVILQISVKDILKGLADNSKDPIFNK------------------SL 126

Query: 101 SFADSRFKENIADKVTLFLQG-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           + AD + ++     + LF +    +   +         T   +I+  +S + +  +I   
Sbjct: 127 AEADEQLRKTDKTYLDLFFEAYAKNGGKLASPDVFANKTLSDQINFQMSDSEVRPIIRKR 186

Query: 160 IEQSM----EIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
           +++S+    E++R+RID+ G+S+  IQR   S RIL++LPG +D +R++ LL +TA++ F
Sbjct: 187 VDESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQALLQSTAQLEF 246

Query: 215 HKVLPNNSKKGFMF 228
            +   N     ++ 
Sbjct: 247 WETYKNTDVFPYLQ 260


>gi|256821004|ref|YP_003142283.1| bifunctional preprotein translocase subunit SecD/SecF
           [Capnocytophaga ochracea DSM 7271]
 gi|256582587|gb|ACU93722.1| protein-export membrane protein SecD [Capnocytophaga ochracea DSM
           7271]
          Length = 995

 Score =  349 bits (894), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 191/810 (23%), Positives = 356/810 (43%), Gaps = 49/810 (6%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
           V+  +    + LR  + K G+   +++++ N  +I +    ++    +   +    Q   
Sbjct: 187 VDESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQSLLQSTAQLEF 246

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +   +      +    +++       +  +    A  QS       +      +S   +
Sbjct: 247 WETYKNTDVFPYLQALNEQLKSTAKTTDKVKDTLTAATQSGSSAIDSLLTDVKKDSVPTQ 306

Query: 184 L--------------GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
                               ++     +D +++   + +              K  +   
Sbjct: 307 QGKGNPLFDLIKANSYEGSPVLFTVSLKDTAQVNSYINSPEAKHLIPASLQYVKFAWGKP 366

Query: 230 VRFLR--DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
            +     +    +   ++   ++G  +  A   +D +    V      +          +
Sbjct: 367 DKKTSLIELYALKGNRDNTPPLTGNVVTQAEQTYDVRNQPAVSMQMDGKGARIWEALTGK 426

Query: 288 DNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
                    ++   ++ +       AI  G+++I+G+FT+  A  LA +LRAG LP   +
Sbjct: 427 AFTQNTNIAIVLDNIVYSAPGVTTGAISGGRSEITGHFTLNEAVDLANVLRAGKLPASAD 486

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           IV+   VG  LG ++I  G  + +   + I  +MI  YG+ G+ AD ++  N++L   +L
Sbjct: 487 IVQSEIVGPSLGQEAIDSGMNSFLIATIFIFAWMIFYYGRAGIYADLALVFNILLIFGVL 546

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           + + A LTLP IAGIVL IG+AVDSN+L+ ER +EE RK +++  ++  GF  A S+I D
Sbjct: 547 ASIEAVLTLPGIAGIVLTIGMAVDSNVLIFERSKEELRKGKNINQAVVDGFKHALSSILD 606

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT  +  ++L FFG G ++GFA T+ + I  ++FTAI I R  + + +  K   +   
Sbjct: 607 SNITTALTALILLFFGSGPIQGFATTLLIGIATTLFTAIFITRLFIDYSVEKKHTLTFTT 666

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       + + F+  R  G   SI+ SI  I  L T GL+ GIDF GG    +  
Sbjct: 667 PITKN---WFKNVDLNFIGKRKIGYAFSIILSIIGIISLSTRGLDQGIDFVGGRTYQIRF 723

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              V+ + V   L++              +     + + Q   +     + E++ K + +
Sbjct: 724 EHEVNPTQVADALKTTLGNVEVKTFGAPNQVKIATKYKVQEESTEVDNEIQELLYKGLQK 783

Query: 645 IVP---------------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +P                  I  +  VGP I+ ++       VI S I + +YI  RF+
Sbjct: 784 FLPEGTSFDSFAKASSTDKIGIMQSMKVGPTIAEDIKSSAFWSVIGSLIVIGLYILFRFR 843

Query: 690 -WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            W F++GAI +   D+   LG ++L      F +E +   +AA+LT++GYS+ND V++YD
Sbjct: 844 RWQFSMGAIVSSAHDVLMVLGIYSLTYSIMPFNMEIDQAFIAAILTVVGYSLNDTVIIYD 903

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ M+    S   R+ I+ ++N TL R++ TS      ++ + ++GG  +  F   M 
Sbjct: 904 RIREVMREPHWS---REKINHALNATLSRTLNTSFTTLAVLVTIFIFGGETLRGFMFAMI 960

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G+++   SSIF+AAP++       A + +
Sbjct: 961 IGVLIGTYSSIFVAAPLIYDTVKDEADHTK 990



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 109/272 (40%), Gaps = 24/272 (8%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             ++ GLDL+GG +++L++   D + G      D + +                   +L+
Sbjct: 86  KELNRGLDLKGGINVILQISVKDILRGLADNSKDPIFNK------------------SLA 127

Query: 102 FADSRFKENIADKVTLFLQG-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
            AD + ++     + LF +    +   +         T   +I+  +S + +  +I   +
Sbjct: 128 EADEQLRKTDKTYLDLFFEAYAKNGGKLASPDVFANKTLSDQINFQMSDSEVRPIIRKRV 187

Query: 161 EQSM----EIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
           ++S+    E++R+RID+ G+S+  IQR   S RIL++LPG +D +R++ LL +TA++ F 
Sbjct: 188 DESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQSLLQSTAQLEFW 247

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
           +   N     ++  +     S             +      +  +      K     +  
Sbjct: 248 ETYKNTDVFPYLQALNEQLKSTAKTTDKVKDTLTAATQSGSSAIDSLLTDVKKDSVPTQQ 307

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
             G   F  +  ++      +       TA V
Sbjct: 308 GKGNPLFDLIKANSYEGSPVLFTVSLKDTAQV 339


>gi|313676093|ref|YP_004054089.1| protein translocase subunit secf;protein translocase subunit secd
           [Marivirga tractuosa DSM 4126]
 gi|312942791|gb|ADR21981.1| protein translocase subunit secF;protein translocase subunit secD
           [Marivirga tractuosa DSM 4126]
          Length = 997

 Score =  348 bits (893), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 225/817 (27%), Positives = 383/817 (46%), Gaps = 56/817 (6%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR--QIQNKITLSFADSRFKEN------------- 110
           V+  +    + LR+ + + G    +++  +   +I +        E              
Sbjct: 180 VDDAIDRSFNILRTRIDRFGTSQPNIQKLENTGRIQIELPGVDNPERVRKLLQGVAKLEF 239

Query: 111 ----IADKVTLFLQGVNSKLNVD---------PKKNLLVTTTEKEISIVLSQNNIDQVIS 157
                 ++V+  L   N  L  +            +   T+ E      L Q+      +
Sbjct: 240 LQVVAINEVSDALAAANEILVAEQKANQKNELGSDDSTETSEESGNLADLLQDEEADTTA 299

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
              +++                +     +      +    D +++  ++      +    
Sbjct: 300 TEGQEADSADANLDSLENAQNVSPLFSLTRSQYGLVYEVTDTAKINDIIQREDIQALFPR 359

Query: 218 LP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
                 + K   +     L +    +    ++  ++G  +N A   FD    +P VD+S 
Sbjct: 360 NTRLLWDVKPRKLDDGTELLELYVVRTQRGNQALLTGEVVNDARQTFDEVG-QPAVDMSM 418

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
           D  GAR++ ++TR+NI   +A+VLD  V +AP + Q IP+GK+ ISGNFT+E A  LA +
Sbjct: 419 DPTGARKWAKITRENINNRIAIVLDNYVYSAPNVTQEIPNGKSIISGNFTMEEAKDLANI 478

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           L+AGSLP    IVEE  +G  LG ++  +G  +IVAGL ++++FM+  Y K G +A+ ++
Sbjct: 479 LKAGSLPAPTRIVEEAIIGPTLGKEARAQGIISIVAGLAMVLIFMVGYYSKGGFIANIAL 538

Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
             N+   L +L+ L A LTLP IAGIVL IG+++D+N+L+ ERIREE R    +  ++  
Sbjct: 539 VFNIFFILGILAQLNAALTLPGIAGIVLTIGMSIDANVLIFERIREEMRAGSPLLKAISS 598

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G+S+AYS+I D+N+T  +   +L++ G G V+GFAIT+ + I  S F+A+ I R ++ ++
Sbjct: 599 GYSKAYSSIVDANVTTFLTGAILYWLGQGPVKGFAITLMIGIACSFFSAVFITRVIVSWM 658

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
            +      I         L+ + I+  FM  R      S +  +  I L+ T GL  G+D
Sbjct: 659 SKKGDQSKISFATPFSKNLLNN-ISFNFMSKRKMAYIGSGIVIVIGIVLMVTKGLTLGVD 717

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F GG    V     V+ + ++  L+       +     G  N L        +  +    
Sbjct: 718 FTGGRSYVVRFAEQVETTSLKVALDGKLEDAGTEVKTYGANNILKVTTSYLVNEESTEAD 777

Query: 635 LEMVKKKITEI----------------VPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
             +  K I  I                    TI  +  VG  I+ ++       VI + I
Sbjct: 778 NTVKTKIIDGIAEATGMSYVETESAMGDNDFTISGSSKVGATIADDIRNSSQESVIFALI 837

Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL-----FGIEFNLTAVAAVLTLIGY 732
           A+ IYI IRF+ W F LGA+  L  D    L  FA+     F  E +   +AA+LT+IGY
Sbjct: 838 AIFIYILIRFRRWQFGLGAVVALFHDTLFVLSAFAIAKLLGFSFEIDQVFIAAILTVIGY 897

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           S+ND VVV+DR+R+ + + +   +  +  + +IN T+ R+V TS+   + +L + ++GG 
Sbjct: 898 SINDTVVVFDRIRETLGIKSK-ATNEETFNTAINNTISRTVMTSLTTLLVILILFIFGGE 956

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+  F+  +  GI+V   SSIFIA P++L +   + K
Sbjct: 957 VLRGFSFALLVGILVGTYSSIFIATPVVLDLAKRKKK 993



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 99/265 (37%), Gaps = 51/265 (19%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN------------------ 42
           M+N  ++V +  ++  + +      F+   + D   +                       
Sbjct: 1   MKNRGFIVFMTVIVTLLCIYYLSFTFVSNGIKDDATAYATDQAGNIDYSKRQNYLDSVYN 60

Query: 43  -------------------RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
                               ++LGLDL+GG H+ LEV   D + G      DE    +  
Sbjct: 61  IPVYNLLGVEFTYKEVQDMELNLGLDLQGGMHVTLEVSPVDIIKGLSGNNEDEAL--INA 118

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
                   +  Q      F  +  ++N   K++ F             ++ +   TE   
Sbjct: 119 LETARERQKTSQGSFVDLFYQAFKEQNPDKKLSEFFA-------TSANRDRISFETEDSE 171

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRL 202
            + +        +  AI++S  I+R RID+ G S+  IQ+   + RI I+LPG  +P R+
Sbjct: 172 VLRII----RTEVDDAIDRSFNILRTRIDRFGTSQPNIQKLENTGRIQIELPGVDNPERV 227

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFM 227
           R+LL   AK+ F +V+  N     +
Sbjct: 228 RKLLQGVAKLEFLQVVAINEVSDAL 252


>gi|284040010|ref|YP_003389940.1| protein-export membrane protein SecD [Spirosoma linguale DSM 74]
 gi|283819303|gb|ADB41141.1| protein-export membrane protein SecD [Spirosoma linguale DSM 74]
          Length = 1029

 Score =  348 bits (891), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 209/799 (26%), Positives = 373/799 (46%), Gaps = 44/799 (5%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQG 121
           D VNG        +++ + K G+   ++++     +I +        E I   +T   + 
Sbjct: 174 DEVNGATTRAFQIIQARVDKFGVANPNIQRLPGSGRIQIELPGVDNPERIRRLLTGAAKL 233

Query: 122 VNSK------------------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
             ++                  L+ +  +   + TT    +   +      + S   + S
Sbjct: 234 EFTEVYRLNELAPAIEGMGAYLLSQEAARKAALKTTATTPATGSAAQGASSLESQLAQGS 293

Query: 164 MEIIRQRID-QIGISESTIQRLGS--HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
            +    + D     ++ T                  +D +R   +L              
Sbjct: 294 KKDSTAKNDTAAASAQGTALTQLFLPVGQDQLGVYLKDTARANDVLNAPEVKGLFPADAF 353

Query: 221 NSKKGFMFGVRFLRDSDGNQYL--VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG 278
            +     F     ++     +L     +  + G  +    +N      +P V ++ +  G
Sbjct: 354 FAWDRKTFKATDGKEILPLYFLKKAGGRAPLEGDVITE-ASNDYDDRGRPEVTMNMNPEG 412

Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG 338
           AR++  +T  N+G+P+A++LD  V TAP +   IP+G++ ISGNFT+E    +A +L+AG
Sbjct: 413 ARKWKNLTAANVGRPVAILLDNLVYTAPNVQNEIPNGRSSISGNFTVEETKDMANVLKAG 472

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
            LP   NIVEE  VGA LGS+++  G  + + G++L++ F++  Y + G +AD ++ +N+
Sbjct: 473 KLPAPTNIVEESVVGATLGSEAVSAGVLSSIIGILLVLAFVVFYYNRAGFIADIALIVNL 532

Query: 399 ILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR 458
              + +++ LGA LT+P IAGIVL IG+AVD+N+L+ ERI+EE    ++   S+  GF  
Sbjct: 533 FFLMGVMASLGAVLTMPGIAGIVLSIGMAVDANVLIFERIKEEMALGKTFKQSVTDGFQN 592

Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           A S+I DSN+T  +  +VLF FG G + GFA T+ + IL S+F AI I R ++ + IR  
Sbjct: 593 ALSSIIDSNVTTFLTGIVLFIFGTGLILGFATTLIIGILTSLFAAIFITRLLLEYYIRNG 652

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
           K  S           +       F+  R     +S +     I      G   G+DFKGG
Sbjct: 653 KTLSFSSTWAKN---LFADSNFDFVSRRKLYYTVSSIIIAAGIISAVFKGFGLGVDFKGG 709

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE----KNFLVRLQYQPGDSVA---Q 631
               +   + V    VR++LE++  G    + + G         V   Y   D+     +
Sbjct: 710 RSYVIRFEKAVSTEDVRNSLETVLGGSPEVKTYGGTGIGANQVKVTTPYLVDDNSQGADK 769

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
                + +         + I++++ VGP I+ +L+   +  ++++   + +YI IRFK  
Sbjct: 770 KAEATIYQGLSAIKGNPAKIESSQKVGPTIAYDLLTSALWSILLAVAVVFVYILIRFKKL 829

Query: 691 YFALGAITTLILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            F  GA+  +  D+   L  F++F       ++ +   V A+LT++GYS+ND VVV+DR+
Sbjct: 830 AFGYGAVVAMFHDVLIILAIFSIFNGLLPFSLDVDQAFVGALLTIMGYSMNDTVVVFDRV 889

Query: 745 RKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           R+ +        S   +I+ ++N TL R+  T  +  + +L + ++GG  I  F+  M  
Sbjct: 890 REYLAENKGKKESIATIINNALNSTLSRTAVTGFSTILVLLVLFIFGGETIRGFSFAMLI 949

Query: 804 GIVVAASSSIFIAAPILLF 822
           G+VV   SS+F+A PI++ 
Sbjct: 950 GVVVGTYSSLFVATPIVVD 968



 Score = 44.7 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 98/277 (35%), Gaps = 59/277 (21%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDR-------------------FPSAMPK 41
           M+N   ++IL  +I  I +      F+ + +                      +  ++ K
Sbjct: 1   MQNRTGIIILTGVIAAICIYFLSFTFVSRGVKADAEAYATNKQGVVDREKKQHYLDSLWK 60

Query: 42  NRISLGLDLR--------------GGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87
             I LG  L+              GG H+VLEV   D +        D    F +   + 
Sbjct: 61  EPIYLGSTLQEVTERELGLGLDLQGGMHVVLEVSPADILRSLSGNNRDP--KFNEALKLA 118

Query: 88  VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
           V   +                                KL  D K   +  T+     I  
Sbjct: 119 VEDQKTSNTSFV-----------------DLFASEFKKLAPDTKLASVFATSANRSKINF 161

Query: 148 SQNNID------QVISHAIEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPS 200
             ++ +        ++ A  ++ +II+ R+D+ G++   IQRL  S RI I+LPG  +P 
Sbjct: 162 QSSDTEVRKLLNDEVNGATTRAFQIIQARVDKFGVANPNIQRLPGSGRIQIELPGVDNPE 221

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           R+R+LL   AK+ F +V   N     + G+     S 
Sbjct: 222 RIRRLLTGAAKLEFTEVYRLNELAPAIEGMGAYLLSQ 258


>gi|126661999|ref|ZP_01732998.1| putative protein-export transmembrane SecDF protein [Flavobacteria
           bacterium BAL38]
 gi|126625378|gb|EAZ96067.1| putative protein-export transmembrane SecDF protein [Flavobacteria
           bacterium BAL38]
          Length = 973

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 195/810 (24%), Positives = 362/810 (44%), Gaps = 44/810 (5%)

Query: 61  DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADK 114
             +  +   +Q   +     LR  + K G+   +++ + N  +I +    ++  + I   
Sbjct: 161 QVEPIIKQKVQESVESAFKVLRERIDKFGVTQPNIQLLGNSGRILVELPGAKDVDRIKKL 220

Query: 115 VTLFLQGVNSKLN--VDPKKNLLVTTTE---KEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
           +    Q    +     +  + L+         E++I  +      + S   +++      
Sbjct: 221 LQSTAQLEFWETYKIEEVGQYLMSVEDALKKTEVAIKEAPVKTTGIDSLLTDKADTTAAA 280

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
               +G   +  Q+   H            +   +     A +  +      +       
Sbjct: 281 NSPFLGKMLAPGQQGSPHIGTFATKDTASINGYLKRADIKAMLPANLANIRFAWGKTNEK 340

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              + D    +   ++   +SG  +  AT  FD   +   V +  +  G+R++ ++T   
Sbjct: 341 NPDITDLYALKGTRDNVAPLSGGVIVDATDTFDQLGNPA-VSMQMNGNGSRKWEQITGAV 399

Query: 290 IGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
             +  A+     +       V   AI  G+++ISGNF+IE    LA +LRAG LP    I
Sbjct: 400 SQQGNAIAIVLDNIVYSAPGVSKGAITGGRSEISGNFSIEETKDLANILRAGKLPAAAEI 459

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           V+   VG  LG ++I  G  + + G  L++L+M+V YGK G  A+ ++ +N++     L+
Sbjct: 460 VQSEVVGPSLGQEAIDNGFLSFIIGFSLVLLWMVVYYGKTGFYANLALLINILFIFGTLA 519

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS--LDMGFSRAYSTIF 464
             GA LTLP IAGIVL IG+AVD+N+++ ER +EE    +SV  +      +  A S+I 
Sbjct: 520 SFGAVLTLPGIAGIVLTIGMAVDANVIIFERAKEELNNGKSVQEATDYAFTWKGAMSSII 579

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           D+NIT  I  ++L  FG G ++GFA T+ + I  S+ TA+ + R  + + +   +  +  
Sbjct: 580 DANITTAITAIILLVFGTGPIQGFATTLLIGIFTSVITAVFVTRMFLDWSLSRNEKLAYS 639

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           + I F+  +     +S +    SI  L T GLN G+DF GG    V 
Sbjct: 640 TSLTKN---WFKNLNIDFLGKKKIAYAVSGILIALSIFSLATKGLNQGVDFVGGRTYQVR 696

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVK 639
            ++ V    V S+L ++     +    +  +      + +  + +  D     ++ E +K
Sbjct: 697 FDKAVSAPEVTSDLVAVFGSAEAKIYGNDNQLKITTKYKIEEEGEGIDKEVNQKLYEGLK 756

Query: 640 KKITEI-----------VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
           K +                   I ++  V   IS+++    +  V+ S   + +Y+ I F
Sbjct: 757 KHLPADLTYEKFANLYEGKQIGILSSAKVTGTISKDIKANSLWAVLGSLFVVFVYLMISF 816

Query: 689 K-WYFALGAITTLILDITKTLGFFALF------GIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + W F  GA+  +  D+   LG F+ F       +E +   +AA+LT+IGYS+ND V+V+
Sbjct: 817 RKWQFGFGAVAAVAHDVIIVLGIFSFFYTILPFNMEIDQAFIAAILTVIGYSLNDTVIVF 876

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           DR+R+ +  Y +S  F+ L++K++N TL R++ TS    + ++ + ++GG  I  F   +
Sbjct: 877 DRIREYL-DYNSSPDFKGLVNKALNTTLSRTINTSATTLVVLIAIFIFGGETIRGFVFAI 935

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             GI+V   SS+FIA P++      +    
Sbjct: 936 LVGILVGTYSSLFIATPVMADAIGKKEGRK 965



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/194 (23%), Positives = 94/194 (48%), Gaps = 15/194 (7%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
           +  N+I+ GLDL GG +++L++   D + G      +   +F+K       + +  Q+ I
Sbjct: 67  VTNNQINKGLDLEGGLNVILQISVKDVLKGLANDSKNP--AFIKALADAKANQQGNQDYI 124

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
              F         A+   L L   +   N +  + +    T K++  ++      Q +  
Sbjct: 125 DAFF-------EAANTAGLKLAAADVFGNRNLDEVIKFDMTNKQVEPII-----KQKVQE 172

Query: 159 AIEQSMEIIRQRIDQIGISESTIQ-RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           ++E + +++R+RID+ G+++  IQ    S RIL++LPG +D  R+++LL +TA++ F + 
Sbjct: 173 SVESAFKVLRERIDKFGVTQPNIQLLGNSGRILVELPGAKDVDRIKKLLQSTAQLEFWET 232

Query: 218 LPNNSKKGFMFGVR 231
                   ++  V 
Sbjct: 233 YKIEEVGQYLMSVE 246


>gi|315224203|ref|ZP_07866043.1| protein-export membrane protein SecD [Capnocytophaga ochracea
           F0287]
 gi|314945936|gb|EFS97945.1| protein-export membrane protein SecD [Capnocytophaga ochracea
           F0287]
          Length = 995

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 189/810 (23%), Positives = 357/810 (44%), Gaps = 49/810 (6%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
           V+  +    + LR  + K G+   +++++ N  +I +    ++    +   +    Q   
Sbjct: 187 VDESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQSLLQSTAQLEF 246

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +   +      +    +++       +  +    A  QS       +      +S   +
Sbjct: 247 WETYKNTDVFPYLQALNEQLKSTAKTTDKVKDTLTAATQSGSSAIDSLLTDVKKDSVPTQ 306

Query: 184 L--------------GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
                               ++     +D +++   + +              K  +   
Sbjct: 307 QGKGNPLFDLIKANSYEGSPVLFTVSLKDTAQVNSYINSPEAKHLIPASLQYVKFAWGKP 366

Query: 230 VRFLR--DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
            +     +    +   ++   ++G  +  A   +D +    V      +          +
Sbjct: 367 DKKTSLIELYALKGNRDNTPPLTGNVVTQAEQTYDVRNQPAVSMQMDGKGARIWEALTGK 426

Query: 288 DNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
                    ++   ++ +       AI  G+++I+G+FT+  A  LA +LRAG LP   +
Sbjct: 427 AFTQNTNIAIVLDNIVYSAPGVTTGAISGGRSEITGHFTLNEAVDLANVLRAGKLPASAD 486

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           IV+   VG  LG ++I  G  + +   + I  +MI  YG+ G+ AD ++  N++L   +L
Sbjct: 487 IVQSEIVGPSLGQEAIDSGMNSFLIATIFIFAWMIFYYGRAGIYADLALVFNILLIFGVL 546

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           + + A LTLP IAGIVL IG+AVDSN+L+ ER +EE RK +++  ++  GF  A S+I D
Sbjct: 547 ASIEAVLTLPGIAGIVLTIGMAVDSNVLIFERSKEELRKGKNINQAVVDGFKHALSSILD 606

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT  +  ++L FFG G ++GFA T+ + I  ++FTAI I R  + + +  K   +   
Sbjct: 607 SNITTALTALILLFFGSGPIQGFATTLLIGIATTLFTAIFITRLFIDYSVEKKHTLTFTT 666

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       + + F+  R  G   SI+ SI  I  L T GL+ GIDF GG    +  
Sbjct: 667 PITKN---WFKNVDLNFIGKRKIGYAFSIILSIIGIISLSTRGLDQGIDFVGGRTYQIRF 723

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            + V+ + V   L++              +     + + Q   +     + E++ K + +
Sbjct: 724 EKEVNPTQVADALKTTLGNVEVKTFGAPNQVKIATKYKVQEESTEVDNEIQELLYKGLQK 783

Query: 645 IVP---------------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +P                  I  +  VGP I+ ++       VI S I + +YI  RF+
Sbjct: 784 FLPEGTSFDSFAKASSTDKIGIMQSMKVGPTIAEDIKSSAFWSVIGSLIVIGLYILFRFR 843

Query: 690 -WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            W F++GAI + + D+   LG ++L      F +E +   +AA+LT++GYS+ND V++YD
Sbjct: 844 RWQFSMGAIVSSVHDVLMVLGIYSLTYSIMPFNMEIDQAFIAAILTVVGYSLNDTVIIYD 903

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ ++    S   R+ I+ ++N TL R++ TS      ++ + ++GG  +  F   M 
Sbjct: 904 RIREVIREPHWS---REKINHALNATLSRTLNTSFTTLAVLITIFIFGGETLRGFMFAMI 960

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G+ +   SS+F+AAP++       A + +
Sbjct: 961 IGVFIGTYSSVFVAAPLIYDTVKDEADHTK 990



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 109/272 (40%), Gaps = 24/272 (8%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             ++ GLDL+GG +++L++   D + G      D + +                   +L+
Sbjct: 86  KELNRGLDLKGGINVILQISVKDILRGLADNSKDPIFNK------------------SLA 127

Query: 102 FADSRFKENIADKVTLFLQG-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
            AD + ++     + LF +    +   +         T   +I+  +S + +  +I   +
Sbjct: 128 EADEQLRKTDKTYLDLFFEAYAKNGGKLASPDVFANKTLSDQINFQMSDSEVRPIIRKRV 187

Query: 161 EQSM----EIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
           ++S+    E++R+RID+ G+S+  IQR   S RIL++LPG +D +R++ LL +TA++ F 
Sbjct: 188 DESIVSAFEVLRKRIDKFGVSQPNIQRLGNSGRILVELPGAKDITRVQSLLQSTAQLEFW 247

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
           +   N     ++  +     S             +      +  +      K     +  
Sbjct: 248 ETYKNTDVFPYLQALNEQLKSTAKTTDKVKDTLTAATQSGSSAIDSLLTDVKKDSVPTQQ 307

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
             G   F  +  ++      +       TA V
Sbjct: 308 GKGNPLFDLIKANSYEGSPVLFTVSLKDTAQV 339


>gi|329964250|ref|ZP_08301351.1| export membrane protein SecD [Bacteroides fluxus YIT 12057]
 gi|328525555|gb|EGF52598.1| export membrane protein SecD [Bacteroides fluxus YIT 12057]
          Length = 1001

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 214/825 (25%), Positives = 373/825 (45%), Gaps = 63/825 (7%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ +++   +I +     +  E +   +     
Sbjct: 170 EEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH--------AIEQSMEIIRQRID 172
               +     +    + + + ++  +LS        +         A+ Q+         
Sbjct: 230 LEFWETYNAKEVAPYLQSADAKLRAILSNETPADSTATDNAATETPAVAQATNTADSLAA 289

Query: 173 QIGISESTIQRL------------------GSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
            +                                 ++     +D + + + L      + 
Sbjct: 290 ALKGENKAQTADLAQIKKEHPLLAMLQVNPNGQGPVVAYANYKDTAEINRYLSMPEVKAE 349

Query: 215 HKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
                +       F       +             K  + G  +     +      KP V
Sbjct: 350 MPKDLSLKWGVSPFEYDPKAQTFELYAIKSTERNGKAPLEGDVVVD-AKDEYDHFGKPAV 408

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +S +  GARR+ ++T+ NI K +A+VLDG V +AP +NQ I  G +QI+G+FT E A  
Sbjct: 409 SMSMNTDGARRWAQLTKQNINKSIAIVLDGYVYSAPNVNQEITGGNSQITGHFTPEQAKD 468

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLV 389
           LA +L++G +P   +IV+E  VG  LG  SI  G  + V  L+L++++M  +YG   G+V
Sbjct: 469 LANVLKSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCSMYGFIPGMV 528

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ LN+  TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  + V 
Sbjct: 529 ANGALVLNLFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRAGKGVK 588

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + ILIS FTA+ + R 
Sbjct: 589 KALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTAVFMTRL 648

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
                +   K+ ++  +      L    +   FM      +  + +  +  +  L T GL
Sbjct: 649 FYEHFMSKDKLLNLTFSSKISKNL-MANVHFDFMGRNKVWMTATGIIIVVCLGFLMTRGL 707

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           +  IDF GG    V     V+   VR  + S            G     VR+        
Sbjct: 708 SQSIDFTGGRNFKVQFENQVEPEQVRELISSKFGDANVSVIAIGTDGKTVRISTNYRIEE 767

Query: 630 AQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +   ++  +                    E     +I +++ VGP I+ ++    I
Sbjct: 768 EGNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADDIKVSAI 827

Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAV 723
             V+++ IA+ IYI IRF+   +++G++  L  D    LG +++      F +E + T +
Sbjct: 828 WSVVLALIAIGIYILIRFRNIAYSIGSVAALACDTIVILGAYSICWGWMPFSLEIDQTFI 887

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            A+LT IGYS+NDKVV++DR+R+   LY     F  L + S+N TL R++ TS++  I +
Sbjct: 888 GAILTAIGYSINDKVVIFDRVREFFGLYPKRNKF-QLFNDSLNTTLARTINTSLSTLIVL 946

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L + + GG  I SFA  M  G+V    SS+F+A+PI   +   + 
Sbjct: 947 LCIFILGGDSIRSFAFAMILGVVCGTLSSLFVASPIAYMLMKNKK 991



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 85/184 (46%), Gaps = 7/184 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I   +IVGP + +  I  GI+  +++ I +++Y+   + +   + A   L+L++  TLG
Sbjct: 483 HIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCSMYGFIPGMVANGALVLNLFFTLG 542

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             + F     ++ +A ++  +G +V+  V++Y+R ++ ++        +  +    +   
Sbjct: 543 ILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRA---GKGVKKALADGYSNAF 599

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +++ + I+ + +  +G   I  FA  +  GI++    S F A  +    Y+    
Sbjct: 600 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYEHFMS 655

Query: 830 NARI 833
             ++
Sbjct: 656 KDKL 659



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 119/368 (32%), Gaps = 44/368 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ-------------SMLDR------------F 35
           M+N  ++ I   ++  + +     +F+ +               +++            F
Sbjct: 1   MQNKGFVRIFAILLTLVCVFYLSFSFVTRHYTHKAKEFAKGDEKVEQDYLDSLANEKVYF 60

Query: 36  PSAMPKN----RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
            +   K      ISLGLDL+GG +++LEV   D +        DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFNQ--ALANAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ +   F     K      ++                  L     ++ S    +  
Sbjct: 119 TTSQDDVITLFVKEYHKLAPGASLSELFAT-----------QQLKDKVNQKSSDAAVEKV 167

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
           + + +  A++ S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 168 LREEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           A + F +         ++        +  +     D                   T   +
Sbjct: 228 ANLEFWETYNAKEVAPYLQSADAKLRAILSNETPADSTATDNAATETPAVAQATNTADSL 287

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
                 E  A+             LA++        PV+  A     A+I+   ++    
Sbjct: 288 AAALKGENKAQTADLAQIKKEHPLLAMLQVNPNGQGPVVAYANYKDTAEINRYLSMPEVK 347

Query: 330 ILAAMLRA 337
                  +
Sbjct: 348 AEMPKDLS 355


>gi|332880059|ref|ZP_08447743.1| export membrane protein SecD [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682055|gb|EGJ54968.1| export membrane protein SecD [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 995

 Score =  347 bits (890), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 197/802 (24%), Positives = 360/802 (44%), Gaps = 55/802 (6%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123
           V+  +    + LR  + K G+   +++++    +I +    ++  + +   +    Q   
Sbjct: 187 VDESIVSAFEVLRKRIDKFGVSQPNIQRLGASGRILIELPGAKDIDRVKALLQSTAQLEF 246

Query: 124 SK-------------LNVDPKKNLLVTTTEKEISIVL---SQNNIDQVISHAIEQSMEII 167
            +             LN   K   +  TT  + ++ +   + + ID +++   + S+   
Sbjct: 247 WETYKNGDVYPYLEALNEQLKTTKVAKTTSTKDTLAVNTQTGSTIDSLLTDVKKDSVPAK 306

Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                   ++            ++     +D  ++   L +              K  + 
Sbjct: 307 GTINPLFDLASPVRY----ESPVLLTANLKDTMQVNSYLHSPEAKRLLPADLQYVKFVWG 362

Query: 228 FGVRFLR--DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
              +     +    +   ++   ++G  +  A   +D +    V      +         
Sbjct: 363 KPDKKTSMIELYALKGNRDNTPALTGNVITQADQGYDMRNQPSVSMQMDGKGARIWEALT 422

Query: 286 TRDNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343
            +    +    ++   ++ +       AI  G+++I+GNFT+  A  LA +LRAG LP  
Sbjct: 423 GKAFTERGNIAIVLDNIVYSAPGVTTGAISGGRSEITGNFTLNEAIDLANVLRAGKLPAG 482

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
            +IV+   VG  LG ++I  G  + +   + I  +M+  YG+ G+ AD ++ +N++L   
Sbjct: 483 ADIVQSEVVGPSLGQEAIDSGMNSFLIATIFIFAWMVFYYGRAGIYADIALLVNILLIFG 542

Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
           +LS +GA LTLP IAGIVL IG+AVD+N+L+ ER +EE  K +S   ++  GF  A S+I
Sbjct: 543 VLSSIGAVLTLPGIAGIVLTIGMAVDANVLIFERSKEELAKGKSTDQAVVDGFKHALSSI 602

Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            DSNIT  +  ++L FFG G ++GFA T+ + IL ++FTAI I R ++ + +  +   + 
Sbjct: 603 LDSNITTGLTALILLFFGSGPIQGFATTLLIGILTTLFTAIFITRLLIDYSVEKRHPLTF 662

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +           + + F+  R  G  ISI  S+  I  LFT GL+ GIDF GG    V
Sbjct: 663 VTSVTKN---WFKNVNLNFIGNRKVGYVISIALSVIGIISLFTRGLDQGIDFVGGRTYQV 719

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKKKI 642
              + V  + V   L+               +     + + Q   +     V +++ K +
Sbjct: 720 RFEKEVVPTQVAEALKKDLGNVEVKTFGAPNQVKISTKYKVQEESTEVDNEVQQLLYKGL 779

Query: 643 TEIVPLSTIQNTEIV---------------GPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +P      +                  GP I+ ++       VI S I + +YI  R
Sbjct: 780 QSFLPQGLSYESFAQASSTDKVGIMQSMKVGPTIAEDIKSSAFWSVIGSLIVIGLYILFR 839

Query: 688 FK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           F+ W F++GAI +   D+   LG ++L      F +E +   +AA+LT++GYS+ND V++
Sbjct: 840 FRKWQFSMGAIVSSAHDVLLVLGIYSLTYSIMPFNMEIDQAFIAAILTVVGYSLNDTVII 899

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           YDR+R+ M+    S   R+ I+ ++N TL R++ TS      ++ + ++GG  +  F   
Sbjct: 900 YDRIREVMRQPHWS---REKINHALNTTLSRTLNTSFTTLAVLVTIFIFGGETLRGFMFA 956

Query: 801 MAFGIVVAASSSIFIAAPILLF 822
           M  G+ V   SSIF+AAPI+  
Sbjct: 957 MIIGVFVGTYSSIFVAAPIIYD 978



 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 99/305 (32%), Gaps = 4/305 (1%)

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           +                      R     ++      +                 G    
Sbjct: 357 VKFVWGKPDKKTSMIELYALKGNRDNTPALTGNVITQADQGYDMRNQPSVSMQMDGKGAR 416

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           R N+  +    +                   G+      +      + 
Sbjct: 417 IWEALTGKAFTERGNIAIVLDNIVYSAPGVTTGAISGGRSEITGNFTLNEAIDLANVLRA 476

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            ++   + I  +E+VGP + +E I  G+   +I+ I +  ++   +     + A   L++
Sbjct: 477 GKLPAGADIVQSEVVGPSLGQEAIDSGMNSFLIATIFIFAWMVFYYG-RAGIYADIALLV 535

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           +I    G  +  G    L  +A ++  IG +V+  V++++R ++ +       S    + 
Sbjct: 536 NILLIFGVLSSIGAVLTLPGIAGIVLTIGMAVDANVLIFERSKEELA---KGKSTDQAVV 592

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                 L   + +++   ++ L +  +G   I  FA  +  GI+    ++IFI   ++ +
Sbjct: 593 DGFKHALSSILDSNITTGLTALILLFFGSGPIQGFATTLLIGILTTLFTAIFITRLLIDY 652

Query: 823 IYDWR 827
             + R
Sbjct: 653 SVEKR 657



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/183 (22%), Positives = 85/183 (46%), Gaps = 22/183 (12%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
           +  ++ GLDL+GG +++L++   D + G      D + +               +  + L
Sbjct: 85  EKELNRGLDLKGGINVILQISVKDILRGLANNSKDPIFNK-----------SLAEADVQL 133

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
              D  + +   +          +   +         T   +I+  +S + +  +I   +
Sbjct: 134 RKTDKTYLDLFFE------AYAKNGGKLASPDVFANKTLSDQINFQMSDSEVRPIIRRKV 187

Query: 161 EQSM----EIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
           ++S+    E++R+RID+ G+S+  IQR   S RILI+LPG +D  R++ LL +TA++ F 
Sbjct: 188 DESIVSAFEVLRKRIDKFGVSQPNIQRLGASGRILIELPGAKDIDRVKALLQSTAQLEFW 247

Query: 216 KVL 218
           +  
Sbjct: 248 ETY 250


>gi|317478345|ref|ZP_07937509.1| protein-export membrane protein SecD [Bacteroides sp. 4_1_36]
 gi|316905504|gb|EFV27294.1| protein-export membrane protein SecD [Bacteroides sp. 4_1_36]
          Length = 999

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 213/831 (25%), Positives = 371/831 (44%), Gaps = 65/831 (7%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIA 112
            + +  +   ++   D     LR+ + + G+   +++ +++   +I +     +  E + 
Sbjct: 162 AEVEKVLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVR 221

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA------IEQSMEI 166
             +         +          +   + ++  +++     +    A      + Q+   
Sbjct: 222 KLLQGSANLEFWETYTAKDVTPYLQAADTKLRAIVASETPAEEADSAATEAPAVAQATST 281

Query: 167 IRQRIDQIGISESTIQRL------------------GSHRILIQLPGEQDPSRLRQLLGT 208
                  +     T                           ++     +D + + + L  
Sbjct: 282 ADSLAAALKGENKTQTADLAQIKKEHPLFAILQVNPSGQGPVVAYANYKDTAEINRYLSM 341

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFDPK 264
               +              +       +             K  + G  +     +    
Sbjct: 342 PEVQAEMPKDLRLKWGVSPYEYDPKAQTFELYAIRSTERNGKAPLEGDVVVS-AKDEYDH 400

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             KP V +S +  GARR+ ++T+ NIGK +A+VLDG V +AP +N  I  G +QI+G+FT
Sbjct: 401 YGKPAVSMSMNTDGARRWAQLTKQNIGKSIAIVLDGYVYSAPNVNNEITGGNSQITGHFT 460

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  LA +LR+G +P   +IV+E  VG  LG  SI  G  + +  L+L++++M  +YG
Sbjct: 461 PEQAKDLANVLRSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCSMYG 520

Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              G+VA+ ++ LN+  TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R
Sbjct: 521 FIPGMVANGALVLNLFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELR 580

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             + V  +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + ILIS FTA
Sbjct: 581 AGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTA 640

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + + R      +   K+ ++  +      L        FM      +  +    +  I  
Sbjct: 641 VFMTRLFYDHFMSKDKLLNLTFSSKISKNL-MANAHFDFMGKNKLWLTTTGAIIVICIAF 699

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L T GL+  IDF GG    V     V+   VR  + S            G     VR+  
Sbjct: 700 LATRGLSQSIDFTGGRNFKVQFENKVEPEQVRELISSKFGDANVSVIAIGTDGKTVRIST 759

Query: 624 QPGDSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRE 664
                     +   ++  +                    E     +I +++ VGP I+ +
Sbjct: 760 NYRIEEEGNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADD 819

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717
           +    I  V+++ IA+ IYI IRF+   +++G++  L  D    LG +++      F +E
Sbjct: 820 IKVSAIWSVVLALIAIGIYILIRFRNIAYSIGSVAALACDTIIILGAYSICWGWMPFSLE 879

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + T + A+LT IGYS+NDKVV++DR+R+   LY     F  L + S+N TL R++ TS+
Sbjct: 880 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKRDRF-QLFNDSLNTTLARTINTSL 938

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  I +L + + GG  I SFA  M  G+V    SS+F+A+PI   +   + 
Sbjct: 939 STLIVLLCIFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYLLMKNKK 989



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 85/184 (46%), Gaps = 7/184 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I   +IVGP + +  I  GI+  I++ I +++Y+   + +   + A   L+L++  TLG
Sbjct: 481 HIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCSMYGFIPGMVANGALVLNLFFTLG 540

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             + F     ++ +A ++  +G +V+  V++Y+R ++ ++        +  +    +   
Sbjct: 541 ILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRA---GKGVKKALADGYSNAF 597

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +++ + I+ + +  +G   I  FA  +  GI++    S F A  +    YD    
Sbjct: 598 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYDHFMS 653

Query: 830 NARI 833
             ++
Sbjct: 654 KDKL 657



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 96/260 (36%), Gaps = 46/260 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +    +                          
Sbjct: 1   MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYTSKAKEFAKGDVKVEQDYLDSLANEKVYF 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +       +DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKVLADNKTDEAFNQ--ALATAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQN 150
              Q+ +   F            V  + +    + L+       L     ++ +    + 
Sbjct: 119 TTSQDDVITLF------------VREYHKLAPGAPLSQLFATQQLKDKVTQKSTDAEVEK 166

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208
            + + +  A++ S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  
Sbjct: 167 VLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQG 226

Query: 209 TAKMSFHKVLPNNSKKGFMF 228
           +A + F +         ++ 
Sbjct: 227 SANLEFWETYTAKDVTPYLQ 246


>gi|270295349|ref|ZP_06201550.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274596|gb|EFA20457.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 999

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 213/831 (25%), Positives = 371/831 (44%), Gaps = 65/831 (7%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIA 112
            + +  +   ++   D     LR+ + + G+   +++ +++   +I +     +  E + 
Sbjct: 162 AEVEKVLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVR 221

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA------IEQSMEI 166
             +         +          +   + ++  +++     +    A      + Q+   
Sbjct: 222 KLLQGSANLEFWETYTAKDVTPYLQAADTKLRAIVASETPAEEADSAATEAPAVAQATST 281

Query: 167 IRQRIDQIGISESTIQRL------------------GSHRILIQLPGEQDPSRLRQLLGT 208
                  +     T                           ++     +D + + + L  
Sbjct: 282 ADSLAAALKGENKTQTADLAQIKKEHPLFAILQVNPSGQGPVVAYANYKDTAEINRYLSM 341

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFDPK 264
               +              +       +             K  + G  +     +    
Sbjct: 342 PEVQAEMPKDLRLKWGVSPYEYDPKAQTFELYAIRSTERNGKAPLEGDVVVS-AKDEYDH 400

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             KP V +S +  GARR+ ++T+ NIGK +A+VLDG V +AP +N  I  G +QI+G+FT
Sbjct: 401 YGKPAVSMSMNTDGARRWAQLTKQNIGKSIAIVLDGYVYSAPNVNNEITGGNSQITGHFT 460

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  LA +LR+G +P   +IV+E  VG  LG  SI  G  + +  L+L++++M  +YG
Sbjct: 461 PEQAKDLANVLRSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCSMYG 520

Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              G+VA+ ++ LN+  TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R
Sbjct: 521 FIPGMVANGALVLNLFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELR 580

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             + V  +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + ILIS FTA
Sbjct: 581 AGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTA 640

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + + R      +   K+ ++  +      L        FM      +  +    +  I  
Sbjct: 641 VFMTRLFYDHFMSKDKLLNLTFSSKISKNL-MANAHFDFMGKNKLWLTTTGAIIVICIAF 699

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L T GL+  IDF GG    V     V+   VR  + S            G     VR+  
Sbjct: 700 LATRGLSQSIDFTGGRNFKVQFENKVEPEQVRELISSKFGDANVSVIAIGTDGKTVRIST 759

Query: 624 QPGDSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRE 664
                     +   ++  +                    E     +I +++ VGP I+ +
Sbjct: 760 NYRIEEEGNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADD 819

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717
           +    I  V+++ IA+ IYI IRF+   +++G++  L  D    LG +++      F +E
Sbjct: 820 IKVSAIWSVVLALIAIGIYILIRFRNIAYSIGSVAALACDTIIILGAYSICWGWMPFSLE 879

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + T + A+LT IGYS+NDKVV++DR+R+   LY     F  L + S+N TL R++ TS+
Sbjct: 880 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKRDRF-QLFNDSLNTTLARTINTSL 938

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  I +L + + GG  I SFA  M  G+V    SS+F+A+PI   +   + 
Sbjct: 939 STLIVLLCIFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYLLMKNKK 989



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 85/184 (46%), Gaps = 7/184 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I   +IVGP + +  I  GI+  I++ I +++Y+   + +   + A   L+L++  TLG
Sbjct: 481 HIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCSMYGFIPGMVANGALVLNLFFTLG 540

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             + F     ++ +A ++  +G +V+  V++Y+R ++ ++        +  +    +   
Sbjct: 541 ILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRA---GKGVKKALADGYSNAF 597

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +++ + I+ + +  +G   I  FA  +  GI++    S F A  +    YD    
Sbjct: 598 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYDHFMS 653

Query: 830 NARI 833
             ++
Sbjct: 654 KDKL 657



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 96/260 (36%), Gaps = 46/260 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +    +                          
Sbjct: 1   MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYTSKAKEFAKGDVKVEQDYLDSLANEKVYF 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +       +DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKVLADNKTDEAFNQ--ALATAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQN 150
              Q+ +   F            V  + +    + L+       L     ++ +    + 
Sbjct: 119 TTSQDDVITLF------------VREYHKLAPGAPLSQLFATQQLKDKVTQKSTNAEVEK 166

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208
            + + +  A++ S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  
Sbjct: 167 VLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQG 226

Query: 209 TAKMSFHKVLPNNSKKGFMF 228
           +A + F +         ++ 
Sbjct: 227 SANLEFWETYTAKDVTPYLQ 246


>gi|317486524|ref|ZP_07945347.1| protein-export membrane protein SecD [Bilophila wadsworthia 3_1_6]
 gi|316922199|gb|EFV43462.1| protein-export membrane protein SecD [Bilophila wadsworthia 3_1_6]
          Length = 891

 Score =  347 bits (889), Expect = 5e-93,   Method: Composition-based stats.
 Identities = 254/882 (28%), Positives = 415/882 (47%), Gaps = 70/882 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ + +   + +++    L +  P  +P+ +    P A     ISLGLDL+GG  L L V
Sbjct: 1   MKLS-FRYAIAAIVMAGALFLLSPTLMPEDV--NLPGASR---ISLGLDLKGGVQLTLGV 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D +  V   L      LR   ++ GI V   RQ+   +             A++V  FL 
Sbjct: 55  DTEKAVQSALINSGQVLRQKAREAGITVLGPRQMPGGVQ------ELIIARANQVDAFLA 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKE-ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                                  +    +   + Q    A++Q +  I  RIDQ G++E 
Sbjct: 109 LAKKDAPQVVPGTPRTGADGAVHLPYSFTPAFVKQTQDLAVDQVLRTISSRIDQFGVAEP 168

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR----- 234
            I++    RILIQLPG  + +R  QL+  +A +SFH V  + S+     GV F       
Sbjct: 169 DIRKQQGDRILIQLPGLTNVNRAVQLVEKSADLSFHLVRDDISQGYLPPGVAFYPMTGKH 228

Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            ++   +  ++    +SG  +  A   FD K    +V +SF   GA  F   T +++GK 
Sbjct: 229 GEATNAKLALDSTPLLSGKEVADARPGFDNKNTS-MVSLSFTPRGAALFEMATGEHVGKR 287

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+VLDG + +APVI + I  G A ISG FT E A  LA  LR+GSL   ++++E+R VG
Sbjct: 288 LAIVLDGTIHSAPVIQEKIAGGTASISGQFTPEEAQDLAISLRSGSLAAPVHVLEQRTVG 347

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG  SI  G  A + G + +++ M + YG  G++A+  +   + L +  ++ LGATLT
Sbjct: 348 PALGEASITSGILAALIGTLAVMIIMPLRYGWSGMLANGMLLCTLSLLMGGMAALGATLT 407

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAG+VL IG+AVD+N+L+ ERIREE     +   ++  GF RA  +I DSN+T +I 
Sbjct: 408 LPGIAGVVLTIGMAVDANVLIFERIREELALGLTPPKAIKAGFERANLSIVDSNLTTIIV 467

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             +L+ FG G VRGFA+T+ L I+ SMF+AI + R      +++     + ++       
Sbjct: 468 AAILYQFGTGPVRGFAVTLTLGIIASMFSAIFLCRIAFDAWMKHTNGTRLSMHGPMELRA 527

Query: 534 IPDCIAIQFM--RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           +   ++      R +  GV   +L  +      +  GL YG+DF GG+   V    PV  
Sbjct: 528 LSGYLSHFPFLKRVKHVGVLTLLLVMVAVSVGTWRGGLQYGVDFSGGVAAQVRFEHPVSD 587

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +   L+ + +  +  Q +    +  +     P     Q     +   +  +     ++
Sbjct: 588 KQLIGALDPMHLEGLMTQQYGDNNSVWLLRFGLPDMPAQQLGEALLSHLQTVDDGGAVSL 647

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-------------------------- 685
              E VGPK+  +L    +  +  + + + +YI                           
Sbjct: 648 DRLETVGPKVGDDLRSSALEAIYYALLLITVYISGRFEQRWGTAALLAGALTATMIALQW 707

Query: 686 --------------------IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                                RF+  FA GA+ +LI D+T T     + G E +L  VAA
Sbjct: 708 MGVPTEGRILAALLLTLFLCWRFRLSFAAGAMASLIFDVTTTTSLLVILGQEIDLNIVAA 767

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISV 783
           +LT+IGYS+ND +V+YDR+R+ ++           ++I +++ +T+ R++ T+    ++ 
Sbjct: 768 LLTIIGYSLNDTIVIYDRIRETLRRENPDSPRPLPEIIQEALGDTMSRTLLTAGTTLVAA 827

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           L + + GG VI  FA+ M  G+ +   SS+F+AAP+L    D
Sbjct: 828 LALFLLGGPVIYGFALTMLIGVFMGTISSLFVAAPMLPLFGD 869


>gi|160891551|ref|ZP_02072554.1| hypothetical protein BACUNI_04003 [Bacteroides uniformis ATCC 8492]
 gi|156858958|gb|EDO52389.1| hypothetical protein BACUNI_04003 [Bacteroides uniformis ATCC 8492]
          Length = 999

 Score =  346 bits (887), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 213/831 (25%), Positives = 372/831 (44%), Gaps = 65/831 (7%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIA 112
            + +  +   ++   D     LR+ + + G+   +++ +++   +I +     +  E + 
Sbjct: 162 AEVEKVLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVR 221

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA------IEQSMEI 166
             +         +          +   + ++  +++     +    A      + Q+   
Sbjct: 222 KLLQGSANLEFWETYTAKDVTPYLQAADTKLRAIVASETPAEEADSAATEAPAVAQATST 281

Query: 167 IRQRIDQIGISESTIQRL------------------GSHRILIQLPGEQDPSRLRQLLGT 208
                  +     T                           ++     +D + + + L  
Sbjct: 282 ADSLAAALKGENKTQTADLAQIKKEHPLFAILQVNPSGQGPVVAYANYKDTAEINRYLSM 341

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFDPK 264
               +              +       +             K  + G  +     +    
Sbjct: 342 PEVQAEMPKDLRLKWGVSPYEYDPKAQTFELYAIRSTERSGKAPLEGDVVVS-AKDEYDH 400

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             KP V +S +  GARR+ ++T+ NIGK +A+VLDG V +AP +N  I  G +QI+G+FT
Sbjct: 401 YGKPAVSMSMNTDGARRWAQLTKQNIGKSIAIVLDGYVYSAPNVNNEITGGNSQITGHFT 460

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  LA +LR+G +P   +IV+E  VG  LG  SI  G  + +  L+L++++M  +YG
Sbjct: 461 PEQAKDLANVLRSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCTMYG 520

Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              G+VA+ ++ LN+  TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R
Sbjct: 521 FIPGMVANGALVLNMFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELR 580

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             + V  +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + ILIS FTA
Sbjct: 581 AGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTA 640

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + + R      +   K+ ++  +      L    +   FM      +  +    +  I  
Sbjct: 641 VFMTRLFYDHFMSKDKLLNLTFSSKISKNL-MANVHFDFMGRNKLWLTTTGAIIVICIAF 699

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L T GL+  IDF GG    V     V+   VR  + S            G     VR+  
Sbjct: 700 LATRGLSQSIDFTGGRNFKVQFENKVEPEQVRELISSKFGDANVSVIAIGTDGKTVRIST 759

Query: 624 QPGDSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRE 664
                     +   ++  +                    E     +I +++ VGP I+ +
Sbjct: 760 NYRIEEEGNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADD 819

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717
           +    I  V+++ IA+ IYI IRF+   +++G++  L  D    LG +++      F +E
Sbjct: 820 IKVSAIWSVVLALIAIGIYILIRFRNIAYSIGSVAALACDTIIILGAYSICWGWMPFSLE 879

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + T + A+LT IGYS+NDKVV++DR+R+   LY     F  L + S+N TL R++ TS+
Sbjct: 880 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKRDRF-QLFNDSLNTTLARTINTSL 938

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  I +L + + GG  I SFA  M  G+V    SS+F+A+PI   +   + 
Sbjct: 939 STLIVLLCIFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYLLMKNKK 989



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 85/184 (46%), Gaps = 7/184 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I   +IVGP + +  I  GI+  I++ I +++Y+   + +   + A   L+L++  TLG
Sbjct: 481 HIVQEDIVGPSLGQASINAGIMSFIVALILLMVYMCTMYGFIPGMVANGALVLNMFFTLG 540

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             + F     ++ +A ++  +G +V+  V++Y+R ++ ++        +  +    +   
Sbjct: 541 ILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRA---GKGVKKALADGYSNAF 597

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +++ + I+ + +  +G   I  FA  +  GI++    S F A  +    YD    
Sbjct: 598 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYDHFMS 653

Query: 830 NARI 833
             ++
Sbjct: 654 KDKL 657



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 96/260 (36%), Gaps = 46/260 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +    +                          
Sbjct: 1   MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYTSKAKEFAKGDVKVEQDYLDSLANEKVYF 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +       +DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKVLADNKTDEAFNQ--ALATAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQN 150
              Q+ +   F            V  + +    + L+       L     ++ +    + 
Sbjct: 119 TTSQDDVITLF------------VREYHKLAPGAPLSQLFATQQLKDKVTQKSTDAEVEK 166

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208
            + + +  A++ S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  
Sbjct: 167 VLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQG 226

Query: 209 TAKMSFHKVLPNNSKKGFMF 228
           +A + F +         ++ 
Sbjct: 227 SANLEFWETYTAKDVTPYLQ 246


>gi|223939077|ref|ZP_03630961.1| protein-export membrane protein SecD [bacterium Ellin514]
 gi|223892237|gb|EEF58714.1| protein-export membrane protein SecD [bacterium Ellin514]
          Length = 845

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 224/713 (31%), Positives = 385/713 (53%), Gaps = 29/713 (4%)

Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195
             T     +   +   +D   +  + Q++E++R+R+D+ G+SE  IQ  G  RILIQLPG
Sbjct: 129 SKTLSGTNAAATNNAALDTQKAGMLSQAVEVLRKRVDKFGVSEPVIQPEGEDRILIQLPG 188

Query: 196 EQDPSR--LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------------DGNQY 241
             +  +   R+ L   A + F  V  ++ +           +                 Y
Sbjct: 189 LSESDKEDARRQLSKPAYLEFRLVHEHSDEFIRQGLTEPGYEVLTERDEDANGKVQTRSY 248

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           LV+ K E++G ++            +P +D +    GA  F  VTR+N+G+ LAVVLDG 
Sbjct: 249 LVKKKPELTGKYI-SGAMVGRNNVGQPEIDFTLTSDGADIFATVTRENVGRQLAVVLDGE 307

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           + TAPVI+  IP G  QI+G +T + A  +A +L    L + ++I+ E +V   LG D++
Sbjct: 308 LQTAPVIHGEIPGGHGQITGTYTDKRAQEIANVL-ENPLQVPVHILSESSVDPTLGKDTV 366

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G  A + G + +  FM++ Y   G +AD ++  N+I+ + +++ +G TLTLP IAGIV
Sbjct: 367 KSGVKAAIIGTIAVAGFMVIYYMFAGAIADVALISNIIILIGVMASIGTTLTLPGIAGIV 426

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+AVD+N+L+ ERIREE+ K +S+  +L  G+ RA+ TIFDS++T LI++++L F G
Sbjct: 427 LTIGMAVDANVLIFERIREESAKGKSLRGALSAGYDRAFGTIFDSHVTTLISSIILIFMG 486

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
            G ++GF +T+ + +  S+FTA+ + R +  F+I  + +KS+ +        I     I 
Sbjct: 487 SGPIKGFGVTLTIGVAASLFTALVVTRIIFDFLISREIVKSLPMLH------IIRVTKID 540

Query: 542 FMRARFWGVGISILFSICSICLL----FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           FM+        + L  +  +             +G+DF GG  L V  ++ VD   +R  
Sbjct: 541 FMKVATPAFICTWLLIVVGLGFGVYRGTVKHDLFGVDFAGGDNLMVGFSQKVDADKIREA 600

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +        +   +  + +  V             ++L++++K           +  E V
Sbjct: 601 VARDAGEKEAIIQYQKDISSSVETLSIKSPYGTSDKILQVLQKDFPAA--QFVSKGAEKV 658

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP I +E+ +  IV  ++S + +L+Y+  R+++ FA+GA+  +I D+  T+G + LFG +
Sbjct: 659 GPIIGKEIQQTAIVASLLSLLGILVYVAFRYEFSFAVGAVAAVIHDVLMTIGIYCLFGRQ 718

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FN T VAAVLT+IG+S+ND +V++DR+R+++KL     SF+DLI++++N+TL R++ TS 
Sbjct: 719 FNATMVAAVLTIIGFSINDTIVIFDRIREDLKLGVRG-SFKDLINQALNQTLSRTIITSG 777

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             F++ L + ++GG  I  FA     GI+    SSI+IA+ ++L  +      
Sbjct: 778 TVFLATLSLYLFGGGAINDFAFTFLVGIITGTYSSIYIASYLVLKWHKGARPQ 830



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 49/134 (36%), Gaps = 20/134 (14%)

Query: 43  RISLGLDLRGGSHLVLEVDEDDFV-----------------NGFLQMYSDELRSFLKKEG 85
           +I LGLDL+GG+  ++ VD    +                  G L    + LR  + K G
Sbjct: 109 KIRLGLDLQGGTSFLVGVDYSKTLSGTNAAATNNAALDTQKAGMLSQAVEVLRKRVDKFG 168

Query: 86  IGVFSMR-QIQNKITLSFAD--SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           +    ++ + +++I +         KE+   +++         ++    + +    TE  
Sbjct: 169 VSEPVIQPEGEDRILIQLPGLSESDKEDARRQLSKPAYLEFRLVHEHSDEFIRQGLTEPG 228

Query: 143 ISIVLSQNNIDQVI 156
             ++  ++      
Sbjct: 229 YEVLTERDEDANGK 242


>gi|318075772|ref|ZP_07983104.1| preprotein translocase subunit SecF [Streptomyces sp. SA3_actF]
          Length = 1156

 Score =  346 bits (886), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 185/873 (21%), Positives = 350/873 (40%), Gaps = 91/873 (10%)

Query: 45  SLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-I 98
            LG+DL GG+ + L+   +           +    D +   +   G+    ++   N  I
Sbjct: 16  RLGIDLAGGTSITLKAQNEPGQKNAVNKTNMDTAVDIINRRVNGLGVSEAEVQTQGNDHI 75

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL--------------------VTT 138
            ++      ++   ++V    Q     +                              + 
Sbjct: 76  VVNIPRGTNEKQAREQVGTTAQLYFRPVLQVAAGTPAADPSASPSPSASSSPSGKTSPSP 135

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
                +   + +      + A         + + Q   +++T                  
Sbjct: 136 KSSAGAGGSTASPGAGSSASAGAGDASPQGRAVPQALKADATPSANAKSDKDADAKASPS 195

Query: 199 PSRLRQLLGTTAKMSFHK--------VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           P         T  +            V      K     V    +       +    E+ 
Sbjct: 196 PDASAAPDDKTTALFGSLDCSNKAQRVKATTGVKPTASMVACGNEGGQWAKYLLGPAEVE 255

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
           G +++ A A  D + ++ +V + F+  G ++F  +T     +   +     VL   V++ 
Sbjct: 256 GKNVSKADAVLDTQRNQWIVQMKFNGEGKKKFSSITGKLAQQQSPMNQFAIVLDGDVVSA 315

Query: 311 AIPSGK----AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              S +    A+ISG+F+ E+A  LA +L  G+LP+  +      V A LG + ++ G  
Sbjct: 316 PSVSERLGGSAEISGSFSQESAKDLANVLSYGALPLTFHEETVTTVTAALGGEQLHAGLI 375

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVL 422
           A   GL L++++++  Y    L+A  S+ ++ ILT  +++LLG      L LP++ G ++
Sbjct: 376 AGAVGLALVIIYLVAYYRGLALIAIASLVVSGILTYTIMTLLGPGIGFALNLPAVCGAIV 435

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+  DS I+  ER+R+E R+ +++  +++ G+ RA  TI  S+  + +A  VLF    
Sbjct: 436 AIGITADSFIVFFERVRDEVREGRTLRPAVERGWPRARRTILVSDFVSFLAAAVLFVVTV 495

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM---------------------- 520
           G V+GFA T+GL+ L+ + T     + ++  + R K                        
Sbjct: 496 GKVQGFAFTLGLTTLLDVVTVFLFTKPLLTLLARRKFFSQGHPWSGFDPKRLGAKPPLRR 555

Query: 521 -------------KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                        + +         L+   I   F+  R    GISIL +I +I  L   
Sbjct: 556 TRTPASTPITPRRRDMSRLGTLGARLVRGEIGYDFIGKRKIWYGISILITITAIVGLSVR 615

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
           GL+ GI+F+GG             +  +S  ++     I  +  +G     +        
Sbjct: 616 GLHMGIEFEGGAVFTTPKTSVSAAAAEQSAEDASGHDAIVQELGNGGMRVQISGIDTGKS 675

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              + ++ + +  K  +I          +VGP    ++  K   G+ I  + ++IY+ I 
Sbjct: 676 DEIRDKLAQDLDVKAEDINAD-------LVGPSWGEQVANKAWTGLGIFMVLVVIYLAIA 728

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           F+W  A+ A+  LI DIT T+G +AL G E     V  +LT++GYS+ D VVV+D +++ 
Sbjct: 729 FEWRMAVAALVALIHDITITVGVYALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQ 788

Query: 748 MKLYTT--SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIP 800
            K  T     ++ ++ + SIN TL RS+ T++ A + V  +   GG      ++   ++ 
Sbjct: 789 SKGITKQTRHTYAEVANLSINGTLVRSINTTVVALLPVAGLLFIGGGFLGAGMLNDISLS 848

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +  G+   A SSIFIA P++  +     +   +
Sbjct: 849 LFVGLAAGAYSSIFIATPLVSDLKSREPQMKAL 881


>gi|315607052|ref|ZP_07882056.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella
           buccae ATCC 33574]
 gi|315251106|gb|EFU31091.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella
           buccae ATCC 33574]
          Length = 1003

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 213/829 (25%), Positives = 378/829 (45%), Gaps = 65/829 (7%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122
           V   +    + +R+ + K G+   ++++    + +I +     +  E +   +       
Sbjct: 167 VKAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIKEPERMRKLLQGSANLE 226

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI-------G 175
             +     +    +   ++ ++              A+++ +   +Q   +         
Sbjct: 227 FWETYNAEEVAPYLQQLDQRVANGSHAEADTATADSAVQKQVAAAKQAEPKFKIDKKETD 286

Query: 176 ISESTIQRLGSHRILIQ-------------------LPGEQDPSRLRQLLGTTAKMSFHK 216
            +E+            Q                       +D + + +++ +        
Sbjct: 287 KAEAAGMAAQQAEATKQHPLLARLQLTGGQSLSLVGYANVRDTAAINKIIYSAVAKQVLP 346

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDI 272
                           +++      L       +  + G  +  A   FD     PVV +
Sbjct: 347 QDLRLMWGAKPADGLKVKNVYELYALKVTTSNGRAPLEGDVITNAKDEFDQFN-NPVVSM 405

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
           S +  GAR++  +T+ NIGK +A+VLDG V +AP +N  I  G +QISGNFTIE    LA
Sbjct: 406 SMNTEGARQWANMTKANIGKAIAIVLDGVVYSAPRVNGEIDGGNSQISGNFTIEDTKDLA 465

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVAD 391
             L++G +P    IV+E  VG  LG+ SI +G  + V   VL++ +M+ +Y    G++A+
Sbjct: 466 NTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIISFVIAFVLLIFYMVAMYNFIPGMIAN 525

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ +NV  TL +L+   A LT+  IAG+VL +G AVD+N+L+ ERI+EE R  + +  +
Sbjct: 526 SALVVNVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRSGKGMKQA 585

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           +D G+S A+S I DSN+T+L+  ++L+ FG G ++GFA T  + I+ S F+A+ + R + 
Sbjct: 586 IDAGYSNAFSAILDSNVTSLLTGIILYIFGTGPIQGFATTWMIGIVCSFFSAVYLTRLVY 645

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
            F +++ K  ++         L       +FM        ++ +     +   F  GL  
Sbjct: 646 EFKLKHDKWLNLKFWTGISKNL-MQGTNYKFMSMYKNTFTLACVAVAVFVISFFVRGLAQ 704

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            IDF GG    V   +P     VR  L +      +     G  N  +R+          
Sbjct: 705 SIDFTGGRNYVVAFEKPTQPEQVRDILTTAFPQATNSAISLGTDNKTIRISTNYKIESNS 764

Query: 632 TRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
             V +  +  +                     +I    +I ++  VGP +++++ R   +
Sbjct: 765 PTVDDEAETMLYTALKKAGLVSQKSVEDFKNPDIRQGGSIISSSKVGPSVAKDVTRGAFI 824

Query: 672 GVIISAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGFFALFG------IEFNLTAVA 724
            V I+ +A+ +YI IRF+   F++GA   L+LD    +G F+L        +E + T + 
Sbjct: 825 SVAIALLAIFVYILIRFRSKAFSIGATVALMLDALTVIGLFSLLQGLLPFSLEIDQTFIG 884

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETLGRSVYTSMAAFIS 782
           AVLT+IGYS+NDKVVV+DR+R+N+KL+        + L + SIN+TL R++ TS++  I 
Sbjct: 885 AVLTVIGYSINDKVVVFDRIRENLKLHPKRAKEDIQGLFNDSINQTLARTINTSVSTLIV 944

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +L +   GG  I  FA  M  G++    SSIFIA+PI   +   + +N 
Sbjct: 945 LLCILFLGGKSIQPFAFAMTLGVIFGTLSSIFIASPIAYLVMGKKIENR 993



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 91/253 (35%), Gaps = 37/253 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N   ++++  ++    +     +        +                          
Sbjct: 1   MQNKGLVIVVAVLLTLASIFYLSFSAATSYYDSQAAKIKDPIAQQDYKDSVKYLGVYPYK 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG +++LE+   D V       +D   +    E           + 
Sbjct: 61  KCLETQIGLGLDLKGGMNVILEISVPDVVETLADHKTDVAFTKSMAEARAEEEKTANSDF 120

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           ITL F ++  K     K+                   L      + S    +  +   + 
Sbjct: 121 ITL-FVNAYHKNAPGHKLAEVFAT-----------QQLQGKVSPQSSDSEVEKALRAEVK 168

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++R RID+ G+ +  IQ+      RI++++PG ++P R+R+LL  +A + F 
Sbjct: 169 AAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIKEPERMRKLLQGSANLEFW 228

Query: 216 KVLPNNSKKGFMF 228
           +         ++ 
Sbjct: 229 ETYNAEEVAPYLQ 241


>gi|255011455|ref|ZP_05283581.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           fragilis 3_1_12]
 gi|313149273|ref|ZP_07811466.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138040|gb|EFR55400.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1007

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 210/831 (25%), Positives = 381/831 (45%), Gaps = 69/831 (8%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ +++   +I +     +  E +   +     
Sbjct: 170 EEVKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE------------------- 161
               +     +    +   + ++  VL+          A++                   
Sbjct: 230 LEFWETYNAKEVAPYLQAADSKLRAVLAHETTANDTVAAVDSTALAATEATPDKAISAAD 289

Query: 162 -------------QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                        Q+     +++ +     + +    +   ++     +D + +   L  
Sbjct: 290 SLAAALKGGEKKQQASSADLEQLKKEHPLLAILSVNPNGGPVVGYANYKDTATVNSYLAM 349

Query: 209 ---TAKMSFHKVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
               A++     L        +    +              K  + G  +  A  ++D  
Sbjct: 350 KEIAAELPKDLRLKWGVSPFEYDPKGQTFELYAIKSTERNGKAPLEGDVVTDAKDDYDQY 409

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
              P V +S +  GARR+  +T+ NI K +A+VLD  V +AP ++  I  G +QI+G+FT
Sbjct: 410 GK-PSVSMSMNSDGARRWALLTKQNINKSIAIVLDNYVYSAPNVSNEITGGNSQITGHFT 468

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M  +YG
Sbjct: 469 PEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYG 528

Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              G++A+ ++ LN   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R
Sbjct: 529 FIPGMIANGALVLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELR 588

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             + V  +L  G+S A+S IFDSN+T++I  ++LF+FG G +RGFA T+ + IL S FTA
Sbjct: 589 SGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTA 648

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + + R +    +   K+ ++         ++       FM      + I+ +  +  I  
Sbjct: 649 VFMTRLVYEHFMNKDKLLNLTFTSPISKKML-VNTHFDFMGGNKKWLTITGVILLICIGS 707

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L T GL+  IDF GG    V    P++   VR  + +            G     VR+  
Sbjct: 708 LVTRGLSQSIDFTGGRNFKVQFENPIEPEQVRELISNKFGDANVSVISIGTDKKTVRIST 767

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRE 664
                     V   ++  + E +     Q                   +++ VGP I+ +
Sbjct: 768 NYRIQDEGNNVDSEIESYLYEALKPMLTQNITLATFIDRDNHTGGSIISSQKVGPSIADD 827

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717
           +    I  V+ + IA+ +YI +RF+   +++G++  L  D    +G ++L      F +E
Sbjct: 828 IKTAAIWSVVFALIAIGLYILLRFRNIAYSVGSVAALTSDTLMIMGAYSLCWGWMPFSLE 887

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + T + A+LT IGYS+NDKVV++DR+R+   LY    + + L D S+N TL R++ TS+
Sbjct: 888 IDQTFIGAILTAIGYSINDKVVIFDRVREFFSLYPKR-NVKQLFDDSLNTTLARTINTSL 946

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  I +L + + GG  I SFA  M  G+V+   SS+F+A+PI   +   + 
Sbjct: 947 STLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFVASPIAYMMLKNKK 997



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 44/259 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWL 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +  K         
Sbjct: 61  GNYTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--KALAEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ +   F     K     K++              K  +   +++ E+  VL +  
Sbjct: 119 TTSQDDVITLFIKEYHKTAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLREE- 171

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
               +  A+  S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 172 ----VKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMF 228
           A + F +         ++ 
Sbjct: 228 ANLEFWETYNAKEVAPYLQ 246


>gi|256425208|ref|YP_003125861.1| bifunctional preprotein translocase subunit SecD/SecF [Chitinophaga
            pinensis DSM 2588]
 gi|256040116|gb|ACU63660.1| protein-export membrane protein SecD [Chitinophaga pinensis DSM 2588]
          Length = 1055

 Score =  345 bits (884), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 198/828 (23%), Positives = 355/828 (42%), Gaps = 79/828 (9%)

Query: 76   ELRSFLKKEGIGVFSMRQIQNK--ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             L+  + K G+   ++   +NK  I++  A     E +   +         ++  + ++ 
Sbjct: 213  VLQKRIDKFGVASPNISLDENKGIISVELAGVDNPERVRKYLQASANLEFREVYKNDEQF 272

Query: 134  LLVTTTEKEISIVLSQNNIDQVISHAIEQ------------------------------- 162
            +         +I  +     +  + + ++                               
Sbjct: 273  IAGVIQPMNEAIKAAVGVAPKAATDSTKKDTAAVAKAGADTSTTGSLAAILDGKDSAKAG 332

Query: 163  ---SMEIIRQRIDQIGISES-----------TIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
               S++   +R  ++  +E                     +   LP +    R    + +
Sbjct: 333  KADSLKSDAERRAELAKAEPFFSIFFPRYDPRQGVAFGPIVGHILPSDTATFRRYTEIPS 392

Query: 209  TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
               +    ++     +        L         +     +SG  +  A  ++D      
Sbjct: 393  VRNVLPKDLVFVYGAEDKENKRAPLPVYAIRVNPINPTPRVSGERVIDAKQDYDQSGRPE 452

Query: 269  VVDISFDEMGARRFFEVTRDNIGKPLAV--------VLDGRVLTAPVINQAIPSGKAQIS 320
            +                       P  V        VLD  V +AP I   I  G++ IS
Sbjct: 453  ISMTMDQVGAKEWKKLTGELAPTDPSNVASLNYVAVVLDNIVYSAPSIQGEIAGGRSSIS 512

Query: 321  GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
            G+FT+E A  LA +L++G +P    IV+E+ VG  LG++SI  G  + +   V+I + M+
Sbjct: 513  GSFTLEEANDLANILKSGKMPAPAKIVQEQIVGPTLGAESIAAGAKSFLISFVVIFVLML 572

Query: 381  VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
            V Y   G VA+ ++ LN++ T  +L+ LGATLT+P IAG+VL IG+AVD+N+++ ERI++
Sbjct: 573  VYYNTAGWVANIALILNLLFTFGILASLGATLTMPGIAGLVLTIGMAVDTNVIIFERIKD 632

Query: 441  ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
            E  + ++   +++ G+ R+Y+ + D +IT+L+  ++LF+FG G V GFA T  L +L+S+
Sbjct: 633  ELSRGKTYQQAVEDGYKRSYAPVLDGHITSLLTAIILFYFGLGPVLGFATTQILGLLLSL 692

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
            F  I I R +  +       K            I    A  F+  R +   +S +     
Sbjct: 693  FCGIMISRIVTDWWTNK---KRHFEYFTPVSRKIFKHAAFDFVGKRKYAYIVSFVMIAL- 748

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                F HG  +G+DF GG    +   +P+    VR  LE     +   +         + 
Sbjct: 749  GASSFFHGFRHGVDFDGGRNYTIRFEQPMKADDVRDALEHEFGTEPYVKTIGNSNQLSIT 808

Query: 621  LQYQPGDSVAQTRVLEMVKK------------KITEIVPLSTIQNTEIVGPKISRELIRK 668
              Y+  +           K              +        I  ++ V P IS +L   
Sbjct: 809  TNYKIEEQSEAVDKEVTQKMFDGLKKFYEPGLTLEAFSSPRFIVASQTVSPTISDDLRAG 868

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721
             I   ++S I + +YI +RF  W +++G I +L+ D+  TL  F+       F +E +  
Sbjct: 869  AIKATVLSLIVIFLYILLRFSKWQYSIGTIFSLLHDVMVTLAVFSYCRDIVPFALEVDQH 928

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAF 780
             +AA+LT+IG+S+ND V+V+DR+R+  +  T    S   +I+K+IN+TL R+V TS+  F
Sbjct: 929  FIAAILTVIGFSMNDTVIVFDRIREYFRTGTMKGASRDQIINKAINDTLSRTVMTSLTVF 988

Query: 781  ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +++L + ++GG V   FA  M  G++    SSIF+AAP+L+       
Sbjct: 989  LTILILFIFGGEVTRGFAFAMLIGVITGTYSSIFVAAPVLVDFDKNNQ 1036



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 78/212 (36%), Gaps = 15/212 (7%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96
               +  ++LGLDL+GG ++VL+V  +D +        D   +   +  +      Q   
Sbjct: 98  DKAKEKELNLGLDLQGGMNVVLDVSVEDVIRALSGQSRDAAFNKALELAVQRKKTSQSD- 156

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
              ++           ++V    +      N   K     T+  K + ++  +       
Sbjct: 157 --FVTLFG-----QAYEEVQPQGRLSTIFANAYQKDIDFNTSNSKVLDVIRREAG----- 204

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQ-RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
             AI+ +  ++++RID+ G++   I        I ++L G  +P R+R+ L  +A + F 
Sbjct: 205 -AAIKNTYLVLQKRIDKFGVASPNISLDENKGIISVELAGVDNPERVRKYLQASANLEFR 263

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           +V  N+ +                  +     
Sbjct: 264 EVYKNDEQFIAGVIQPMNEAIKAAVGVAPKAA 295


>gi|110636539|ref|YP_676746.1| bifunctional preprotein translocase subunit SecD/SecF [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279220|gb|ABG57406.1| protein translocase subunit secD / protein translocase subunit secF
           [Cytophaga hutchinsonii ATCC 33406]
          Length = 991

 Score =  345 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 198/813 (24%), Positives = 376/813 (46%), Gaps = 43/813 (5%)

Query: 61  DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADK 114
           D +  +N  + +  +     LR+ + K G    ++++     +I +        + + + 
Sbjct: 172 DVEKVINEEIDLSVERSFNILRNRIDKFGAIQPNIQRIRGTGRILVELPGVENPQRVRNL 231

Query: 115 VT-----------------LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI----D 153
           +                       +N  L    ++    + ++  +++  + N+     +
Sbjct: 232 LQGTAKLEFMEVYQIYEIAEKTNRINDYLINLAEEKKTSSASDTSVAVTTTDNSSLLVTN 291

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
                A     +      D   +S+          ++ +       +++  L    + + 
Sbjct: 292 SADKDAATVKADTSAAAKDTSKVSDFYRLIQAQGGLIYKTTDTSIINKILALDRVKSIIG 351

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
                  + K   + G     +    +   + K  ++G  +               V + 
Sbjct: 352 NDLRFVWDRKANVVDGDVGYIELVPVKVGRDGKAALAGDVITNVGYGLSSDGKGYEVSMQ 411

Query: 274 FDEMGARRFFEVTRDNIGKPLAVV----LDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
               GA+ + ++T+    +         LD  V +AP +   IP+G + ISGNFT++ + 
Sbjct: 412 MSPAGAKSWRKITKAASQEQNKRRIAIVLDNSVYSAPTVQVEIPNGSSSISGNFTLDESK 471

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            LA +L+AG LP  + IVEE  VG  LG ++I  G  ++ AG+ +++L +I+ Y K G+V
Sbjct: 472 DLANILKAGKLPAPVRIVEEVIVGPTLGQEAIMDGLVSMFAGIAIVILLLIMYYSKGGMV 531

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++  N+I TL  L+ L + LTLP IAGIVL IG++VD+N+L+ ERI+EE    +S+ 
Sbjct: 532 ANIALVFNIIFTLGFLASLNSVLTLPGIAGIVLTIGMSVDANVLIMERIKEELANGKSLL 591

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++++G+ +A+S+IFDSN+T ++  V+LFF G G V+GFA T+ L +L S FTA+ I + 
Sbjct: 592 TAIELGYDKAFSSIFDSNLTTILTGVILFFLGEGPVKGFATTLVLGVLCSFFTAVYITKL 651

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +++++ + K   +I  +         +       + +   V  S +  I  +  +   GL
Sbjct: 652 ILLWMAKNKSDNAISFDTFISKNAFKNLNFDFISKRKIAYVFSSAILIIGLVLTIIQGGL 711

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N G+DFKGG    V    PV  S +R  L     G+ +     G  + +        +  
Sbjct: 712 NLGVDFKGGRSYIVEFKNPVVASDLRDGLNDYFEGNGTEVKTYGSDSKVKITTSYLVEDE 771

Query: 630 AQTRVLEMVKKKIT-----EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
           +     ++    +             I ++  VG  ++ ++       ++ S I + +YI
Sbjct: 772 SADADKKVEAALVKGAENYAKNSEFKILSSSKVGATVADDIKNASWKAMLASLIGIFLYI 831

Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFALFG-----IEFNLTAVAAVLTLIGYSVNDKV 738
           ++RF KW  +LG +  L  D    L  FA+        E +   VAA+LT+IG+S+ND V
Sbjct: 832 FLRFKKWQLSLGGVVALFHDTLVVLAIFAILRVFNIDFEIDQVIVAALLTIIGFSINDTV 891

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V++DR+R+     ++ +    +++ SIN TL R++ T++   +SVL + ++GG  +  F+
Sbjct: 892 VIFDRVRE-FDKESSKLDMASMLNASINSTLSRTIMTTVIVLVSVLILFIFGGETLRGFS 950

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  G+V  + S+IFIA P+LL +     K A
Sbjct: 951 FALLIGVVFGSYSTIFIAVPMLLDLRSKAEKEA 983



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 98/262 (37%), Gaps = 50/262 (19%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN------------------ 42
           MRN   ++ L  ++  +        F+ + +      A                      
Sbjct: 1   MRNKNLIIALTVIVTALCFFYISFTFVARGVEKDAVDAATTADGKVDIQKKQAYMDSIYN 60

Query: 43  -------------------RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
                               ++LGLDL+GG H+VLEV   + +       ++    F K 
Sbjct: 61  EPVYNFLGAKYTYKEVKSLELALGLDLQGGMHVVLEVSPVEILQAMAGSNAESA-DFKKA 119

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
             +     R  Q     +F DS      A+ ++       +K  +D +            
Sbjct: 120 IELAKEKQRNSQGTFQQAFFDSYRSIAGANNLSKIFANATNKGKIDIRSTDKDVEK---- 175

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRL 202
                   I++ I  ++E+S  I+R RID+ G  +  IQR+  + RIL++LPG ++P R+
Sbjct: 176 -------VINEEIDLSVERSFNILRNRIDKFGAIQPNIQRIRGTGRILVELPGVENPQRV 228

Query: 203 RQLLGTTAKMSFHKVLPNNSKK 224
           R LL  TAK+ F +V       
Sbjct: 229 RNLLQGTAKLEFMEVYQIYEIA 250


>gi|311745424|ref|ZP_07719209.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Algoriphagus sp. PR1]
 gi|126577974|gb|EAZ82194.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Algoriphagus sp. PR1]
          Length = 991

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 210/812 (25%), Positives = 387/812 (47%), Gaps = 43/812 (5%)

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFL 119
            D  +   ++   + LR+ + + G    ++++     +I +       +E + + +    
Sbjct: 176 IDTEIENAIERSFNILRTRIDRFGTSQPNIQRIQGSGRIQIELPGVDNQERVRNLLQGVA 235

Query: 120 QGVNSKLNV----------------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
           +    ++                    +KN   T T    S+     + +  + +A+++ 
Sbjct: 236 KLQFWEVTEINEIGASLEAINSAYLAEQKNTASTETAATDSLSTENLSPEDSLRNALDEQ 295

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
           +  I         S        ++ ++  +      +R+ +     A +     L    K
Sbjct: 296 LNQIDPTNPDASTSPIFSLLKANYGLVYDIKDTVTINRILKRDEYKALLPRDVKLLWGVK 355

Query: 224 KG-FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
                 G   L     +     D+  + G  +         +T +P V +  +  GAR++
Sbjct: 356 PTVAEDGSELLELYAISTPRGTDQAPLEGDVVTD-ARQVLDQTSRPAVSMQMNAEGARKW 414

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
            ++T DN G+ +AVVLD  V TAPV+N  IP+G+++ISGNFT++ A  LA +L++GSLP 
Sbjct: 415 RKLTADNTGRRIAVVLDDYVYTAPVVNGEIPTGQSEISGNFTLQEAQDLANILKSGSLPA 474

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
              IVEE  +G  LG +++ +G  ++VAGL ++VLFM+  Y K GL+A  ++  N+   L
Sbjct: 475 PTQIVEESIIGPTLGKEALNQGLISMVAGLAIVVLFMVAYYAKGGLIAIAALVFNIFFIL 534

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            +L+ L ++LTLP IAGIVL IG+++D+N+L+ ERI+EE R    +  +++ G+++A+S 
Sbjct: 535 GILAQLQSSLTLPGIAGIVLTIGMSIDANVLIFERIKEELRNGVGLLAAINAGYNKAFSA 594

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           I DSN+T  +   +L+  G G V+GFAI + + I  S F+++ I R ++ ++ +     S
Sbjct: 595 ILDSNVTTFLTGAILYALGQGPVKGFAIVLMIGIASSFFSSVFITRVIVSWMSKKGDKSS 654

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           I+ +       +   + I F+  R     IS    +  + +   +GL +G+DF GG    
Sbjct: 655 INFSTPFTKNAL-SSLNIDFLGKRKVAYLISTSIIVLGLGVAAINGLKFGVDFTGGRSYI 713

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM----- 637
           V    PV  S +++ L+    G +  + +       V   Y   +    +          
Sbjct: 714 VAFAEPVAASELKTGLDGEFDGSVEVKTYGATNVLKVTTSYLINEDDDASNKEVESKVKE 773

Query: 638 ----------VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                      +           I  +  VG  ++ ++       +I++ IA+ +YI IR
Sbjct: 774 GIASVTGLTFTEDAEDLTNQEFAITGSSKVGATVADDIKASSGEAMIVALIAIFLYILIR 833

Query: 688 FK-WYFALGAITTLILDITKTLGFFALFG-----IEFNLTAVAAVLTLIGYSVNDKVVVY 741
           F+ W F+L +I  LI D    +  FA+        E +   +AAVLT+IGYS+ND V+V+
Sbjct: 834 FRKWQFSLASIIALIHDTLFVIAAFAIASAFGATFEIDQVFIAAVLTVIGYSINDTVIVF 893

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           DR+R+N+    T+       + +IN+TLGR++ TS    I ++ + ++GG V+  F+  +
Sbjct: 894 DRIRENLDNRGTNR-LVKTFNDAINQTLGRTLITSFTTMIVIIVLLLFGGEVLRGFSFAL 952

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+V   SS++IA PI++ +         +
Sbjct: 953 FIGILVGTYSSVYIATPIVVDLMKREIDQEEL 984



 Score = 45.5 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            H+ L V   + V G      D   +  K       + +    K    F  +    +   
Sbjct: 91  MHVTLAVSPVEIVKGLAGNPKDVAFN--KSVEEAREASKTSDEKYVDLFYSAWQANSSGK 148

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            ++               +  +   +     + +    I+     AIE+S  I+R RID+
Sbjct: 149 NLSSIFATA-------ANRGRISLESSDSEILDIIDTEIEN----AIERSFNILRTRIDR 197

Query: 174 IGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
            G S+    +  GS RI I+LPG  +  R+R LL   AK+ F +V   N    
Sbjct: 198 FGTSQPNIQRIQGSGRIQIELPGVDNQERVRNLLQGVAKLQFWEVTEINEIGA 250


>gi|60683645|ref|YP_213789.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           fragilis NCTC 9343]
 gi|253566477|ref|ZP_04843930.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. 3_2_5]
 gi|60495079|emb|CAH09898.1| putative protein-export transmembrane SecDF protein [Bacteroides
           fragilis NCTC 9343]
 gi|251944649|gb|EES85124.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. 3_2_5]
 gi|301165157|emb|CBW24727.1| putative protein-export transmembrane SecDF protein [Bacteroides
           fragilis 638R]
          Length = 1007

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 211/831 (25%), Positives = 380/831 (45%), Gaps = 69/831 (8%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ +++   +I +     +  E +   +     
Sbjct: 170 EEVKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE------------------- 161
               +     +    +   + ++  VL+          A++                   
Sbjct: 230 LEFWETYNAKEVAPYLQAADSKLRAVLAHEATVNDTVAAVDSTALAAAEATPDKAVSAAD 289

Query: 162 -------------QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                        Q+     +++ +     + +    +   ++     +D + +   L  
Sbjct: 290 SLAAALKGGEKKQQASSADLEQLKKEHPLLAILSVNPNGGPVVGYANYKDTATVNSYLAM 349

Query: 209 ---TAKMSFHKVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
               A++     L        +    +              K  + G  +  A  ++D  
Sbjct: 350 KEVAAELPKDLRLKWGVSPFEYDPKGQTFELYAIKSTERNGKAPLEGDVVTDAKDDYDQY 409

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
              P V +S +  GARR+  +T+ NI K +A+VLD  V +AP ++  I  G +QI+G+FT
Sbjct: 410 GK-PSVSMSMNSDGARRWALLTKQNINKSIAIVLDNYVYSAPNVSNEITGGNSQITGHFT 468

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M  +YG
Sbjct: 469 PEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYG 528

Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              G++A+ ++ LN   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R
Sbjct: 529 FIPGMIANGALVLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELR 588

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             + V  +L  G+S A+S IFDSN+T++I  ++LF+FG G +RGFA T+ + IL S FTA
Sbjct: 589 SGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTA 648

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + + R +    +   K+ ++         ++       FM      + I+ +  +  I  
Sbjct: 649 VFMTRLVYEHFMSKDKLLNLTFTSPISKKML-VNTHFDFMGGNKKWLTITGVILLICIGS 707

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L T GL+  IDF GG    V    P++   VR  + +            G     VR+  
Sbjct: 708 LVTRGLSQSIDFTGGRNFKVQFENPIEPEQVRELISNKFGDANVSVISIGTDKKTVRIST 767

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRE 664
                     V   ++  + E +     Q                   +++ VGP I+ +
Sbjct: 768 NYRIQDEGNNVDSEIESYLYEALKPMLTQNITLATFIDRDNHTGGSIISSQKVGPSIADD 827

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717
           +    I  V+ + +A+ +YI IRF+   ++ G++  L  D    LG ++L      F +E
Sbjct: 828 IKTSAIWSVVFALVAIGLYILIRFRNIAYSAGSVAALTSDTLMILGAYSLCWGWMPFSLE 887

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + T + A+LT IGYS+NDKVV++DR+R+   LY    + + L D S+N TL R++ TS+
Sbjct: 888 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-NVKQLFDDSLNTTLARTINTSL 946

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  I +L + + GG  I SFA  M  G+V+   SS+F+A+PI   +   + 
Sbjct: 947 STLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFVASPIAYMMLKNKK 997



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 44/259 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWL 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +  K         
Sbjct: 61  GNYTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--KALAEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ +   F     K     K++              K  +   +++ E+  VL +  
Sbjct: 119 TTSQDDVITLFIKEYHKVAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLREE- 171

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
               +  A+  S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 172 ----VKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMF 228
           A + F +         ++ 
Sbjct: 228 ANLEFWETYNAKEVAPYLQ 246


>gi|53715707|ref|YP_101699.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           fragilis YCH46]
 gi|52218572|dbj|BAD51165.1| protein-export membrane protein SecD/SecF [Bacteroides fragilis
           YCH46]
          Length = 1007

 Score =  344 bits (882), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 211/831 (25%), Positives = 380/831 (45%), Gaps = 69/831 (8%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ +++   +I +     +  E +   +     
Sbjct: 170 EEVKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE------------------- 161
               +     +    +   + ++  VL+          A++                   
Sbjct: 230 LEFWETYNAKEVAPYLQAADSKLRAVLAHEATVNDTVAAVDSTALAATEATPDKAVSAAD 289

Query: 162 -------------QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                        Q+     +++ +     + +    +   ++     +D + +   L  
Sbjct: 290 SLAAALKGGEKKQQASSADLEQLKKEHPLLAILSVNPNGGPVVGYANYKDTATVNSYLAM 349

Query: 209 ---TAKMSFHKVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
               A++     L        +    +              K  + G  +  A  ++D  
Sbjct: 350 KEVAAELPKDLRLKWGVSPFEYDPKGQTFELYAIKSTERNGKAPLEGDVVTDAKDDYDQY 409

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
              P V +S +  GARR+  +T+ NI K +A+VLD  V +AP ++  I  G +QI+G+FT
Sbjct: 410 GK-PSVSMSMNSDGARRWALLTKQNINKSIAIVLDNYVYSAPNVSNEITGGNSQITGHFT 468

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M  +YG
Sbjct: 469 PEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYG 528

Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              G++A+ ++ LN   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R
Sbjct: 529 FIPGMIANGALVLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELR 588

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             + V  +L  G+S A+S IFDSN+T++I  ++LF+FG G +RGFA T+ + IL S FTA
Sbjct: 589 SGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTA 648

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + + R +    +   K+ ++         ++       FM      + I+ +  +  I  
Sbjct: 649 VFMTRLVYEHFMSKDKLLNLTFTSPISKKML-VNTHFDFMGGNKKWLTITGVILLICIGS 707

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L T GL+  IDF GG    V    P++   VR  + +            G     VR+  
Sbjct: 708 LVTRGLSQSIDFTGGRNFKVQFENPIEPEQVRELISNKFGDANVSVISIGTDKKTVRIST 767

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRE 664
                     V   ++  + E +     Q                   +++ VGP I+ +
Sbjct: 768 NYRIQDEGNNVDSEIESYLYEALKPMLTQNITLATFIDRDNHTGGSIISSQKVGPSIADD 827

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717
           +    I  V+ + +A+ +YI IRF+   ++ G++  L  D    LG ++L      F +E
Sbjct: 828 IKTSAIWSVVFALVAIGLYILIRFRNIAYSAGSVAALTSDTLMILGAYSLCWGWMPFSLE 887

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + T + A+LT IGYS+NDKVV++DR+R+   LY    + + L D S+N TL R++ TS+
Sbjct: 888 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-NVKQLFDDSLNTTLARTINTSL 946

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  I +L + + GG  I SFA  M  G+V+   SS+F+A+PI   +   + 
Sbjct: 947 STLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFVASPIAYMMLKNKK 997



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 44/259 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWL 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +  K         
Sbjct: 61  GNYTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--KALAEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ +   F     K     K++              K  +   +++ E+  VL +  
Sbjct: 119 TTSQDDVITLFIKEYHKVAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLREE- 171

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
               +  A+  S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 172 ----VKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMF 228
           A + F +         ++ 
Sbjct: 228 ANLEFWETYNAKEVAPYLQ 246


>gi|89890608|ref|ZP_01202118.1| SecD/SecF/SecDF export membrane protein [Flavobacteria bacterium
            BBFL7]
 gi|89517523|gb|EAS20180.1| SecD/SecF/SecDF export membrane protein [Flavobacteria bacterium
            BBFL7]
          Length = 1028

 Score =  344 bits (881), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 212/833 (25%), Positives = 372/833 (44%), Gaps = 76/833 (9%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
            +  ++    + LR  + K G+   +++++ +  +I +    ++  + + D +T   Q   
Sbjct: 185  LKEYMVSAFEVLRKRIDKFGVTQPNIQRLGDSGRILIELPGAKDIKRVEDILTSTAQLEF 244

Query: 124  SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI--------- 174
              +    + +  V   +   +  L+  N +   + + E                      
Sbjct: 245  WHVYKASEVSQFVIEADTYWAEKLAAKNQESQPADSTEVDEVADAVVDAAQDAADEAVDA 304

Query: 175  -GISESTIQRLGSHRILIQLPGEQDPSR-------------LRQLLGTTAKMSFHKVLPN 220
             G                ++  +Q+P               +     +   +    +   
Sbjct: 305  VGDILGNDATTDVDGEDAEINYDQNPILSRMLAPGNGTGPVIATFKASDKDLIVGYLNDA 364

Query: 221  NSKKGFMFGVRFLRDSDGNQYLV-----------------EDKVEISGIHLNGATANFDP 263
              +      +R ++ + G   L                  E +  + G  +  A  +F  
Sbjct: 365  QVRSKLPVELRNVKFAWGLPVLNDELGYEITDLYAIRSNREGEAPLGGAVITDARQDF-E 423

Query: 264  KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQIS 320
             + + VV +S +  GA+ + ++T +       +     D       + N  I  G +QIS
Sbjct: 424  MSGQVVVSMSMNSEGAKIWEDMTTEAYQNGSQIAVVLDDTVYSAPGITNGPITGGSSQIS 483

Query: 321  GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
            GNFT+  A  LA +LRAG LP    I+++  VG  LG ++I  G  +    L+L++++M+
Sbjct: 484  GNFTVADAEDLANVLRAGKLPAGAEIIQKAVVGPSLGKEAISSGLWSFGIALLLVLVWMV 543

Query: 381  VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
              YG+ GL AD ++ +N++     L+ L A LTLP IAGIVL IG++VD+N+L+ ERIRE
Sbjct: 544  FYYGRAGLYADIALVVNILFIFGALASLKAVLTLPGIAGIVLTIGISVDANVLIFERIRE 603

Query: 441  ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
            E  K +S   S+  GF+ A S+I D+NIT  +  ++LF FG G ++GFA T+ + IL S+
Sbjct: 604  ELAKGKSQADSIKDGFNNALSSILDANITTFLTALILFIFGTGPIQGFATTLMIGILTSL 663

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
            FTAI I R  +    +  K  +        +F     + I F++ R     IS+ F + S
Sbjct: 664  FTAIFITRLFIDGYGKNGKSLAFSTPITKNWFR---NVNIDFLKKRKVAYMISLAFVLIS 720

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
               LFT  LN+GIDF GG    V   +PV+ + V   L +  +   +     G  N L  
Sbjct: 721  AISLFTKSLNFGIDFSGGRTYTVRFEQPVNATEVTKMLSAEDVFGSAEAKTYGSDNQLKI 780

Query: 621  LQYQPGDSVAQTRVLE-------------------MVKKKITEIVPLSTIQNTEIVGPKI 661
                  D V      E                        +++      I +   VGP I
Sbjct: 781  STKYGIDGVDAEVTKEIEDKLYANLKQYMPADMDMATFVDVSKDDKQYGIMSNFQVGPTI 840

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------F 714
            + +++   +  +  S I + +YI IRF+ W F+LGA+  +  D+   LG F+L      F
Sbjct: 841  ADDILTGSLYAIFGSLIVVFLYILIRFRKWQFSLGAVAAVFHDVLIVLGVFSLTYDILPF 900

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             +E +   +AA+LT+IGYS+ND VVV+DR+R+ +    T+  F   ++ +I+ T+ R++ 
Sbjct: 901  NMEIDQAFIAAILTVIGYSLNDTVVVFDRIREFINE-RTNWEFARTVNAAISSTISRTLN 959

Query: 775  TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            TS+   I +L +  +GG  I  F + +  G++V   SS+FIA P++    +  
Sbjct: 960  TSLTTLIVLLAIFTFGGESIQGFMLALIIGVLVGTYSSVFIATPVMFDTMEKS 1012



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 48/202 (23%), Positives = 86/202 (42%), Gaps = 25/202 (12%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
             +  +  GLDL+GG +++L++   D + G      D                     + 
Sbjct: 80  AKEQELQKGLDLKGGINVILQISVKDLLIGMADGSKDP------------------DFRT 121

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
            L  AD R K+  AD    FL+  N+          + +  E +  I  + +N +     
Sbjct: 122 ALERADERIKDGQADYFDYFLEEFNAIDGAKLGSPDIFSNQEMDGVIDFNMSNSEIEPKL 181

Query: 159 AIEQ------SMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            ++       + E++R+RID+ G+++  IQR   S RILI+LPG +D  R+  +L +TA+
Sbjct: 182 RVKLKEYMVSAFEVLRKRIDKFGVTQPNIQRLGDSGRILIELPGAKDIKRVEDILTSTAQ 241

Query: 212 MSFHKVLPNNSKKGFMFGVRFL 233
           + F  V   +    F+      
Sbjct: 242 LEFWHVYKASEVSQFVIEADTY 263


>gi|260173105|ref|ZP_05759517.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
            sp. D2]
 gi|315921381|ref|ZP_07917621.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695256|gb|EFS32091.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1008

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 209/833 (25%), Positives = 379/833 (45%), Gaps = 74/833 (8%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122
            V   ++   + LR+ + + G+   +++ +++   +I +     +  E +   +       
Sbjct: 172  VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231

Query: 123  NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              +     +    + + + ++  VL+          A++ + E           + S   
Sbjct: 232  FWETYTAKEVLPAMQSADAKLRAVLAHETTAVDT-AAVDSTKEAQLAEATPAKKNISAAD 290

Query: 183  RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
             L +         E   +     +     +     L ++ +   +    +   +D N+YL
Sbjct: 291  SLAAALKGDATAAEDKSTANLAEIKKQYPLLAILQLNSSGQGPVVGYANYKDTADINKYL 350

Query: 243  V----------------------------------------EDKVEISGIHLNGATANFD 262
                                                       K  + G  +  A   FD
Sbjct: 351  AMPEVKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 410

Query: 263  PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
              +    V ++ +  GARR+ ++T+ NIG+ +A+VLD  V +AP +N  I  G++QI+G+
Sbjct: 411  QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 469

Query: 323  FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM-IV 381
            FT E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + +  L++++ FM  +
Sbjct: 470  FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGMFSFIVALIMVMCFMCFL 529

Query: 382  LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
                 G+VA+ ++F+N   T+ +LS   A LT+  IAGIVL +G+AVD+N+L+ ER +EE
Sbjct: 530  YGFIPGMVANVALFMNFFFTMGILSSFQAALTMSGIAGIVLSLGIAVDANVLIYERTKEE 589

Query: 442  NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
             R  + V  +L  G+S A+S IFDSN+T++I  V+LF FG G +RGFA T+ + IL S F
Sbjct: 590  LRSGKGVKQALSDGYSNAFSAIFDSNLTSIITGVILFNFGTGPIRGFATTLIIGILCSFF 649

Query: 502  TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            TA+ + R      +   K+ ++          +       FM        I+    +  I
Sbjct: 650  TAVFMTRVFYDHFMSKDKLLNLKF-QSKFSKNLFVNTHFDFMGTNKKAFIITSAVILICI 708

Query: 562  CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                  GL+  IDF GG    V   +P++   VR  + +            G     VR+
Sbjct: 709  ASFVIRGLSQSIDFTGGRNYKVQFEQPIEPEAVRELIANDFGEATVSVIAIGTDKRTVRV 768

Query: 622  QYQPGDSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKIS 662
                  +     V   +++++                    +     +I +++ VGP I+
Sbjct: 769  STNYRINENGNTVDSEIEERLYNAVKPLLTQNISLQTFIDRDNHTGGSIISSQKVGPSIA 828

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715
             ++    I  V+++ IA+ +YI +RF+   +++G++  L  D    +G ++L      F 
Sbjct: 829  DDIKTGAIYSVVLALIAIGLYILLRFRNIAYSVGSVVALSCDTVIIIGAYSLLWGIVPFS 888

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +E + T + A+LT IGYS+NDKVV++DR+R+   LY      R L + S+N TL R++ T
Sbjct: 889  LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINT 947

Query: 776  SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            S++  I +L + + GG  I SFA  M  G+++   SS+F+A+PI   +   + 
Sbjct: 948  SLSTLIVLLCIFILGGDSIRSFAFAMILGVIIGTLSSLFVASPIAYNMMKNKK 1000



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 115/366 (31%), Gaps = 47/366 (12%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ I   F     K     K++                  L     ++ S    +  
Sbjct: 119 INSQDDIITLFVREYHKAAPNAKLSELFAT-----------QQLKDKVNQKSSDAEVEKV 167

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
           +   +  A+E S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 168 LRTEVKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           A + F +          M                E     +    +   A     T    
Sbjct: 228 ANLEFWETYTAKEVLPAMQSADAKL---RAVLAHETTAVDTAAVDSTKEAQLAEATPAKK 284

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              + D + A    + T         +    +      I Q   SG+  + G    +   
Sbjct: 285 NISAADSLAAALKGDATAAEDKSTANLAEIKKQYPLLAILQLNSSGQGPVVGYANYKDTA 344

Query: 330 ILAAML 335
            +   L
Sbjct: 345 DINKYL 350


>gi|265767346|ref|ZP_06095012.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 2_1_16]
 gi|263252651|gb|EEZ24163.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 2_1_16]
          Length = 1007

 Score =  343 bits (880), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 211/831 (25%), Positives = 380/831 (45%), Gaps = 69/831 (8%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ +++   +I +     +  E +   +     
Sbjct: 170 EEVKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE------------------- 161
               +     +    +   + ++  VL+          A++                   
Sbjct: 230 LEFWETYNAKEVAPYLQAADSKLRAVLAHEATVNDTVAAVDSTALAAAEATPDKAVSAAD 289

Query: 162 -------------QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                        Q+     +++ +     + +    +   ++     +D + +   L  
Sbjct: 290 SLAAALKGGEKKQQASSADLEQLKKEHPLLAILSVNPNGGPVVGYANYKDTATVNSYLAM 349

Query: 209 ---TAKMSFHKVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
               A++     L        +    +              K  + G  +  A  ++D  
Sbjct: 350 KEVAAELPKDLRLKWGVSPFEYDPKGQTFELYAIKSTERNGKAPLEGDVVTDAKDDYDQY 409

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
              P V +S +  GARR+  +T+ NI K +A+VLD  V +AP ++  I  G +QI+G+FT
Sbjct: 410 GK-PSVSMSMNSDGARRWALLTKQNINKSIAIVLDNYVYSAPNVSNEITGGNSQITGHFT 468

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M  +YG
Sbjct: 469 PEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYG 528

Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              G++A+ ++ LN   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R
Sbjct: 529 FIPGMIANGALVLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELR 588

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             + V  +L  G+S A+S IFDSN+T++I  ++LF+FG G +RGFA T+ + IL S FTA
Sbjct: 589 SGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTA 648

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + + R +    +   K+ ++         ++       FM      + I+ +  +  I  
Sbjct: 649 VFMTRLVYEHFMSKDKLLNLTFTSPISKKML-VNTHFDFMGGNKQWLTITGVILLICIGS 707

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L T GL+  IDF GG    V    P++   VR  + +            G     VR+  
Sbjct: 708 LVTRGLSQSIDFTGGRNFKVQFENPIEPEQVRELISNKFGDANVSVISIGTDKKTVRIST 767

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRE 664
                     V   ++  + E +     Q                   +++ VGP I+ +
Sbjct: 768 NYRIQDEGNNVDSEIESYLYEALKPMLTQNITLATFIDRDNHTGGSIISSQKVGPSIADD 827

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717
           +    I  V+ + +A+ +YI IRF+   ++ G++  L  D    LG ++L      F +E
Sbjct: 828 IKTSAIWSVVFALVAIGLYILIRFRNIAYSAGSVAALTSDTLMILGAYSLCWGWMPFSLE 887

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + T + A+LT IGYS+NDKVV++DR+R+   LY    + + L D S+N TL R++ TS+
Sbjct: 888 IDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-NVKQLFDDSLNTTLARTINTSL 946

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  I +L + + GG  I SFA  M  G+V+   SS+F+A+PI   +   + 
Sbjct: 947 STLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFVASPIAYMMLKNKK 997



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 97/259 (37%), Gaps = 44/259 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWL 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +  K         
Sbjct: 61  GNYTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--KALAEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ +   F     K     K++              K  +   +++ E+  VL +  
Sbjct: 119 TTSQDDVITLFIKEYHKVAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLREE- 171

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
               +  A+  S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 172 ----VKAAVTNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMF 228
           A + F +         ++ 
Sbjct: 228 ANLEFWETYNAKEVAPYLQ 246


>gi|313205859|ref|YP_004045036.1| protein translocase subunit secf; protein translocase subunit secd
           [Riemerella anatipestifer DSM 15868]
 gi|312445175|gb|ADQ81530.1| protein translocase subunit secF; protein translocase subunit secD
           [Riemerella anatipestifer DSM 15868]
 gi|315022746|gb|EFT35770.1| bifunctional preprotein translocase subunit SecD/SecF [Riemerella
           anatipestifer RA-YM]
 gi|325336704|gb|ADZ12978.1| SecD/SecF [Riemerella anatipestifer RA-GD]
          Length = 958

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 191/809 (23%), Positives = 351/809 (43%), Gaps = 57/809 (7%)

Query: 61  DEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADK 114
           +    +   +        + +R+ + K G+   ++++     +I +     +  + +   
Sbjct: 171 EVKSIIRKKIDAAVGSAYEVIRTRIDKMGVTQPNVQRVPGTGRILVEMPGIKDIDRVKKM 230

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +    +    ++   P+         K +        + +  +     ++  +R      
Sbjct: 231 LQTSAKLQFWEVQQVPEVAPYFEQLSKLVLAKGDSMGVAKTTNFPALLNLNTLR------ 284

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             S        S    +        +   +              P ++    +       
Sbjct: 285 --SNGVGNIKLSDTATVNKILNSSVALNARPGNIKYTKFLWAYKPESTDPDHLVLYAIRS 342

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           +  G   +                     +  + VVD+  D  G + +  +T  N+GKP+
Sbjct: 343 NISGKAPV---------DGAVDKANISYDQIGRVVVDMQMDSEGTKDWKILTEKNVGKPV 393

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           AV LD +V TAP +  AIP+G+ QISGNFT + A  L  +L  G LP    IV+   VG 
Sbjct: 394 AVTLDDKVYTAPNVVNAIPNGRTQISGNFTQDEAQDLVNVLNTGKLPASAKIVQADVVGP 453

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG  SI  G  + +   V IV+++I  YG  G+ A  ++ +N+     ++  + ATLTL
Sbjct: 454 SLGQASIDAGMWSFIIAFVFIVVYIIFYYGGAGVFAVIAMIINLFYIFGIMDSMDATLTL 513

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL + +AVD+N+++ ER +EE    +++  +   GF  A S I D ++T L+  
Sbjct: 514 PGIAGIVLTMAMAVDTNVIIYERTKEELFAGKNIREAYHDGFKHALSAIVDGHLTTLLTA 573

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           VVL+ FG G ++GFA+T+ + ++++ FT++ + R M   I                   I
Sbjct: 574 VVLYIFGTGPIQGFAVTLIIGLIMTFFTSVLLSRVM---IFSRLNKGKGLSVWTPATKNI 630

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              + + F+  R +   IS + ++  +  +  +G   G+DF+GG    V  ++ VD +  
Sbjct: 631 FRNVWVAFIEKRKFAYIISGILTVICLASIVVNGFKLGVDFEGGRNYVVKFDKTVDAAQA 690

Query: 595 RSNLESLQ------IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM----------- 637
            ++L  L          +  + F       +   Y+  D                     
Sbjct: 691 EASLSQLFQTKDGKNNSVDVKTFGTSNQLKITTDYKIDDESLAADQEIEAKLFEGLKSNY 750

Query: 638 -----VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
                + K  +       I ++  VGP ++ ++   G   V+ S + + IYI  RF+ W 
Sbjct: 751 PTGYTLDKFKSAEGDNLGIVSSTKVGPSVADDIKIGGTFAVLASLLGIFIYILFRFRRWQ 810

Query: 692 FALGAITTLILDITKTLGFFALF------GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           F+LGA+  L  D    LG ++LF       +E N   +AA+LT++GYS+ND V+V+DR+R
Sbjct: 811 FSLGAVLALFHDAIIILGAYSLFYKVSPFNMEINQDFIAAILTVLGYSINDTVIVFDRIR 870

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           + ++    S +   L + SI+ TLGR++ TS+   + +L + ++GG  +  F   +  GI
Sbjct: 871 EYLRE-RKSTTLAGLFNDSISSTLGRTINTSLTVLMVILAIFIFGGDSLRGFMFALLLGI 929

Query: 806 VVAASSSIFIAAPILL-FIYDWRAKNARI 833
                SSIFIA+ I   F+   + ++ +I
Sbjct: 930 GFGTYSSIFIASGIAYDFLKGKKQEDIKI 958


>gi|333029604|ref|ZP_08457665.1| protein-export membrane protein SecD [Bacteroides coprosuis DSM
           18011]
 gi|332740201|gb|EGJ70683.1| protein-export membrane protein SecD [Bacteroides coprosuis DSM
           18011]
          Length = 982

 Score =  343 bits (879), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 214/825 (25%), Positives = 392/825 (47%), Gaps = 55/825 (6%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112
            D +  +   ++   D     LR+ + + G+   +++Q      +I +     +  E + 
Sbjct: 161 ADVEKILRSEVKSAVDNSYNVLRTRIDRFGVVQPNIQQLEGGLGRIMIELPGIKEPERVR 220

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
             +         +     +    + + +  ++ +L+ N        A+ + +E     + 
Sbjct: 221 KLLQGSANLEFWETYTSAEVTPALQSVDARLAQILNNNQDLAQKEEALLKQLEEGGDSLA 280

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG-----TTAKMSFHKVLPNNS---KK 224
                ++   + G ++  +     Q P R   + G      TA ++ +            
Sbjct: 281 ISKEIDAIHAQQGVNQNPLLSKLHQSPYRESAVAGYSQVRDTATINGYLAKEEVKKLLPS 340

Query: 225 GFMFGVRFLRDSDGNQYLV--------EDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
                     D   N   +          K  + G  +  A + +D     PVV +  + 
Sbjct: 341 NLSLKWGVAPDRTTNLVTLYAIKETERNGKAPLEGDVVTDAKSEYDQYN-NPVVSMEMNS 399

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR++ ++T+ NIG+ +A+VLDG V +AP +N  I  G++QISGNFT++    LA +L+
Sbjct: 400 DGARKWAQLTKKNIGRAIAIVLDGYVYSAPNVNSEITGGRSQISGNFTVDETTDLANVLK 459

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI-VLYGKWGLVADFSIF 395
           +G +P    IV+E  +G  LG  SI  G  + V  LVL++++M  +     G++A+ ++ 
Sbjct: 460 SGKMPAPARIVQEDIIGPSLGQASINAGIISFVIALVLLMIYMCSIYGIIPGMIANGALI 519

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
            N+  TL +L+   A LTL  IAG+VL +G+AVD+N+L+ ER REE R  + V  +L  G
Sbjct: 520 FNLFFTLGILASFQAALTLSGIAGMVLALGMAVDANVLIYERTREELRAGKGVKAALKDG 579

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           ++ A+S IFDSN+T++I  ++LF FG G +RGFA T+ + I +S FTA+ + R +    +
Sbjct: 580 YANAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGIAVSFFTAVFLTRVVYDHFL 639

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
           R  K+ ++  +       +       FM        ++ +  +  +  LFT GL+  IDF
Sbjct: 640 RKDKLLNLSFSSSISK-KMFVDPKFDFMGGNKKYFILTGVIIVVCLGFLFTRGLSQSIDF 698

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGD---------ISFQNFDGEKNFLVRLQYQPG 626
            GG    V   + V+   VR+ +      +            +      N+ +    +  
Sbjct: 699 TGGRNFKVQFEQEVEPEHVRNLISDKFGDEATVSVIAIGTDHKTVRISTNYRINESSETV 758

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIV-----------GPKISRELIRKGIVGVII 675
           DS  +  + E +K  +T+ + L T  + E             GP I+ ++       V++
Sbjct: 759 DSEIEAFLYETLKPLLTQNISLETFIDRENHTGGSIISSQKVGPSIADDIKTGAFWSVVL 818

Query: 676 SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF-------GIEFNLTAVAAVL 727
           + IA+ +YI +RF+   +++G++  L  D    LG +++F        +E + T + A+L
Sbjct: 819 AVIAIGLYILVRFRNIAYSVGSVVALTSDTLMILGVYSMFWGTFLPFSLEIDQTFIGAIL 878

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
           T IGYS+NDKVV++DR+R+   LY     +  L ++S+N TL R++ TS++  I +L + 
Sbjct: 879 TAIGYSINDKVVIFDRVREYFGLYPKRDKY-QLFNESLNTTLSRTINTSLSTLIVLLCIF 937

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + GG  I SF+  M  G++    SS+F+A+PI   I + +  N +
Sbjct: 938 ILGGDSIRSFSFAMILGVLFGTFSSLFVASPIAYIIMNKQKNNNK 982



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 82/181 (45%), Gaps = 7/181 (3%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             +I+GP + +  I  GI+  +I+ + ++IY+   +     + A   LI ++  TLG  A
Sbjct: 471 QEDIIGPSLGQASINAGIISFVIALVLLMIYMCSIYGIIPGMIANGALIFNLFFTLGILA 530

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F     L+ +A ++  +G +V+  V++Y+R R+ ++        +  +           
Sbjct: 531 SFQAALTLSGIAGMVLALGMAVDANVLIYERTREELRA---GKGVKAALKDGYANAFSAI 587

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +++ + I+ + +  +G   I  FA  +  GI V    S F A  +   +YD   +  +
Sbjct: 588 FDSNLTSIITGIILFNFGTGPIRGFATTLIIGIAV----SFFTAVFLTRVVYDHFLRKDK 643

Query: 833 I 833
           +
Sbjct: 644 L 644



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 50/270 (18%), Positives = 95/270 (35%), Gaps = 43/270 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  I +     + +    + +  +                       
Sbjct: 1   MQNKGFVKVFAVLLTLICVFYLSFSVVTSQQMKKAKAYANGNATLEQEYLDSLSNKKVWL 60

Query: 40  -------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
                   +  I LGLDL+GG +++LEV   D +        DE  +  K          
Sbjct: 61  GYTLKQCREMEIGLGLDLKGGMNVILEVSVPDVIRTLADNKPDEEFN--KALDTASKLAI 118

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             QN +   F     K      ++        K        L+   T         +  +
Sbjct: 119 SSQNDLISLFVKEYQKLAPGKSLSSIFATKQLKG-------LVTQNTSDAD----VEKIL 167

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS--HRILIQLPGEQDPSRLRQLLGTTA 210
              +  A++ S  ++R RID+ G+ +  IQ+L     RI+I+LPG ++P R+R+LL  +A
Sbjct: 168 RSEVKSAVDNSYNVLRTRIDRFGVVQPNIQQLEGGLGRIMIELPGIKEPERVRKLLQGSA 227

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            + F +   +      +  V        N 
Sbjct: 228 NLEFWETYTSAEVTPALQSVDARLAQILNN 257


>gi|313204457|ref|YP_004043114.1| protein translocase subunit secf;protein translocase subunit secd
            [Paludibacter propionicigenes WB4]
 gi|312443773|gb|ADQ80129.1| protein translocase subunit secF;protein translocase subunit secD
            [Paludibacter propionicigenes WB4]
          Length = 1009

 Score =  342 bits (877), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 208/845 (24%), Positives = 373/845 (44%), Gaps = 75/845 (8%)

Query: 60   VDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADK 114
             D    +   +        + LR  + + G+   ++++    +I +     +  E +   
Sbjct: 162  ADVVKVLKTEVDGAIANSFNVLRERIDRFGVVQPNIQKLGNGRILIELPGVKEPERVRKL 221

Query: 115  VTLFLQGVNSKLNV---------DPKKNLLVTTTEKEISIV------------------- 146
            +         +            +  K +        +++V                   
Sbjct: 222  LQGSANLEFWETYELNEIINNLSEANKVIATIQKNGGVAVVKDSTAATTPTSTTAKTATT 281

Query: 147  ---------------LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
                           + Q+        A           +  I    +   ++    I+ 
Sbjct: 282  ASKTPALSKVDSLKAVLQHKNASATDSAKVLEKSQKENPLFAILQVNAQGGQVARGPIVG 341

Query: 192  QLPGEQDPSRLRQLLGTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
                 +D +++                     S K         +         + +  +
Sbjct: 342  -YAHSKDTAQINSYFNIKQVKEALPRDLGLRWSVKSIDKKGEIFQLIAIKITNRDGRAPL 400

Query: 250  SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
            +G  +  A A+F   + +  V +S ++ GA+ +  +T+DNIGK +A+ LDG + + P +N
Sbjct: 401  AGDVITDARADFSQNSSEAQVSMSMNQEGAKTWARMTKDNIGKSIAIALDGYIYSFPTVN 460

Query: 310  QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
              I  G +QI+G+FT++ A  LA  L++G +P   +IV+E  VG  LG ++I  G  + +
Sbjct: 461  TEIDGGNSQITGHFTVDEAKDLANTLKSGKMPAPAHIVQEDIVGPSLGQEAINNGLISFI 520

Query: 370  AGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
               +L++++MIV YG   GLVAD ++  NV   + +L+  G+ LTLP IAGIVL +G+AV
Sbjct: 521  IAFILVLVYMIVYYGLIPGLVADIALLANVFFLIGILASFGSVLTLPGIAGIVLTMGMAV 580

Query: 429  DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
            D+N+L+ ERIREE R  +++   +  GF  A + I DSN+T L++ +VL  FG G ++GF
Sbjct: 581  DANVLIYERIREEMRNGKNMRAGIQEGFKHALNAIIDSNVTTLLSGIVLVIFGQGPIKGF 640

Query: 489  AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
             +T+   IL +  TA+ + R M+      +  K +                I FM+ R  
Sbjct: 641  GVTLSFGILTTFITAVFLTRYMIEAYAARENAKELPF-HTKISEHFLQNTKIDFMKIRKS 699

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
               +S    + S       G + GIDF GG    V  ++PV    V++ L+    GD+  
Sbjct: 700  MYVLSAALFLISFVSFAVRGFSLGIDFTGGRNYVVSFDKPVKTEEVKTLLKDAFEGDLPQ 759

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI------------TEIVPLSTIQNTEI 656
                G  N +        +        E+  K                      I+++  
Sbjct: 760  VITIGNDNQVRISTKYKINEDGSNIDNEIESKLYTNLKSMLNSNVTEAQFIKDNIKSSSK 819

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL-- 713
            VGP ++ ++    +  VI++ + + +YI IRF+ W + LGA+ +L  D+  T+G F+L  
Sbjct: 820  VGPAVADDIKTSAVWAVILAVLGIGLYILIRFREWGYTLGAVVSLAHDVVITMGIFSLLY 879

Query: 714  ----FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                F +E + + +AA+LT++GYS+ND V+ YDR+R+N+ LY        +I+ S+N+ L
Sbjct: 880  GLLPFSMEIDQSFIAAILTVLGYSINDTVINYDRIRENVTLYPKRDRIT-IINDSVNQML 938

Query: 770  GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD--WR 827
            GR+  T+    I+++ M ++GG  I  F   M FGI +   SS+FIA+PI + +      
Sbjct: 939  GRTFSTTFTVIITLIAMFIFGGDSIRGFIFAMLFGIFIGTYSSVFIASPITVEMDKLVKI 998

Query: 828  AKNAR 832
             K+ +
Sbjct: 999  RKSKK 1003



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 52/271 (19%), Positives = 100/271 (36%), Gaps = 40/271 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N   + I    +  + +     + +      +                          
Sbjct: 1   MQNKGLVRIFALALTLVCIFYLSFSVVTSHYNAKAKEYAKGDKMKEFNYLDSLASENIWL 60

Query: 40  -------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
                   +  I+LGLDL+GG ++ LEV   D +       ++   +    +   +    
Sbjct: 61  GYTLKECREKEIALGLDLKGGMNVTLEVSVADIIRSLSDFNTNPNFNLALAKATQLQKTN 120

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
              + I L        +         L  + S    + K  + +TT+  ++  VL     
Sbjct: 121 SQVSYIDLFVKAYTELDP-----QAKLSTIFSTF--ELKDKISLTTSNADVVKVL----- 168

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
              +  AI  S  ++R+RID+ G+ +  IQ+LG+ RILI+LPG ++P R+R+LL  +A +
Sbjct: 169 KTEVDGAIANSFNVLRERIDRFGVVQPNIQKLGNGRILIELPGVKEPERVRKLLQGSANL 228

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
            F +    N     +     +  +      V
Sbjct: 229 EFWETYELNEIINNLSEANKVIATIQKNGGV 259


>gi|224537587|ref|ZP_03678126.1| hypothetical protein BACCELL_02467 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520784|gb|EEF89889.1| hypothetical protein BACCELL_02467 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 999

 Score =  342 bits (876), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 214/821 (26%), Positives = 375/821 (45%), Gaps = 61/821 (7%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122
           V   +    + LR+ + + G+   +++ +++   +I +     +  E +   +       
Sbjct: 172 VKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231

Query: 123 NSK---------------------LNVDPKKNLLVTTTEKEISIVLSQNNIDQ------V 155
             +                     L  +   + +   +     +  + +  D        
Sbjct: 232 FWETYNAKDVAPYLQAADNKLRNILANEAPADSVAVDSTAAPVVAQATSTADSLAAALKG 291

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            + A    +  I++    + + +      G            D ++   +    A++   
Sbjct: 292 ENKAQSVDLAQIKKEHPLLAVLQVNSSGQGPVVAYANYKDTADINKYLSMKEIQAELPKD 351

Query: 216 KVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
             L        +    +              +  + G  +  A   +D       V +S 
Sbjct: 352 LRLKWGVSAYEYDPKGQTFELYAIRSTERNGRAPLEGDVVVSAKDEYDQFGKPA-VSMSM 410

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
           +  G+RR+ ++T+ NIGK +A+VLDG V +AP +N  I  G +QI+G+FT E A  LA +
Sbjct: 411 NTDGSRRWAQLTKQNIGKSIAIVLDGYVYSAPNVNTEITGGNSQITGHFTPEQAKDLANV 470

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFS 393
           L++G +P    IV+E  VG  LG  SI  G  + +  L+L++++M  +YG   G+VA+ +
Sbjct: 471 LKSGKMPAPARIVQEDIVGPSLGQASINAGVFSFIVALILLMIYMCSMYGFIPGMVANGA 530

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           + LN+  T+ +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  + V  +L 
Sbjct: 531 LVLNMFFTMGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRAGKGVKKALA 590

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            G+S A+S IFDSN+T++I  V+LF FG G +RGFA T+ + ILIS FTA+ + R +  +
Sbjct: 591 DGYSNAFSAIFDSNLTSIITGVILFNFGTGPIRGFATTLIIGILISFFTAVFMTRLVYEY 650

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
            +   K  ++  +      L    +   FM        I+ +  +  I  LF  GL+  I
Sbjct: 651 FMNKDKWLNLTFSSKISKNL-MTNVHFDFMGRNKQWFTITGIILVICIGSLFVRGLSQSI 709

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           DF GG    V     V+   VR  + S            G     VR+            
Sbjct: 710 DFTGGRNFKVQFENAVEPEQVRELIASKFGDSNVSVIAIGTDKKTVRISTNYRIEEEGNN 769

Query: 634 VLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRELIRKGIVGVI 674
           V   ++  + E +     Q                   +++ VGP I+ ++    +  V+
Sbjct: 770 VDSEIEAYLYETLKPVLTQNITLETFIDRENHTGGSIVSSQKVGPSIADDIKTSAMWSVV 829

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVL 727
           ++ IA+ +YI IRF+   +++G++  L  D    LG ++L      F +E + T + A+L
Sbjct: 830 LALIAIGLYILIRFRNIAYSVGSVAALTSDTLMILGAYSLCWGWMPFSLEIDQTFIGAIL 889

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
           T IGYS+NDKVV++DR+R+   LY      + L + S+N TL R++ TS++  I +L + 
Sbjct: 890 TAIGYSINDKVVIFDRVREFFGLYPKR-DRKQLFNDSLNTTLARTINTSLSTLIVLLCIF 948

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + GG  I SFA  M  G+V+   SS+FIA+PI   +   + 
Sbjct: 949 ILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYMMMKNKK 989



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 48/282 (17%), Positives = 103/282 (36%), Gaps = 46/282 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLANEKVFF 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +          ++
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFNQALA-NAAKQAI 119

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQN 150
               + ITL              V  + +   +++L+       L     ++ S    + 
Sbjct: 120 SSQDDVITL-------------FVREYHKIAPDARLSELFATQQLKDKVNQKTSDAEVEK 166

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208
            +   +  A++ S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  
Sbjct: 167 VLRTEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQG 226

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           +A + F +         ++        +        D V + 
Sbjct: 227 SANLEFWETYNAKDVAPYLQAADNKLRNILANEAPADSVAVD 268


>gi|255037347|ref|YP_003087968.1| bifunctional preprotein translocase subunit SecD/SecF [Dyadobacter
           fermentans DSM 18053]
 gi|254950103|gb|ACT94803.1| protein-export membrane protein SecD [Dyadobacter fermentans DSM
           18053]
          Length = 996

 Score =  342 bits (875), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 196/806 (24%), Positives = 374/806 (46%), Gaps = 42/806 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQ 120
              ++G +       ++ + K G+   ++++   QN++ +        E +   ++   +
Sbjct: 174 KTEIDGSIDRAFQITQARIDKFGVTNPNIQRLPGQNRVLVELPGVDNPERVRRLLSGAAK 233

Query: 121 GVNSK-----------------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
              ++                 L    +       +    +   +  +     S A   +
Sbjct: 234 LEFAEVYLTQELGAGLEGLGRYLTQQAEIEKAAKKSAPATASADTAASDTTKKSTAGGLA 293

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
            ++ ++       S +   +  +   L     +     L+     +  +   +V      
Sbjct: 294 AQLEQKSDTAATDSAALAAQSAALTSLFVPMPQGLGVYLKDTARASEILRRPEVRSLFPA 353

Query: 224 KGFMFGVRFLRDSDGNQYLV--------EDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
                  R   ++ GNQ ++          +  + G  +     +      +P V +  +
Sbjct: 354 DLVFMWDRKGTEAGGNQLILPLYFIKKTNGEAAMEGDVIVD-ATHDYDDRGRPEVTMRMN 412

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
             GAR++  +T  ++G+P+A+++D  V TAP +   IP+G + I+G+FT+E    +A +L
Sbjct: 413 GEGARKWRSLTARSVGRPVAIIIDNLVYTAPTVQGEIPNGNSSITGSFTVEETKDMANVL 472

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           +AG LP   +IVEE  VG+ LG+++I  G  +   GL+++++FM+  Y + G +AD ++ 
Sbjct: 473 KAGKLPAPTHIVEEAVVGSSLGAEAINDGLMSSAVGLLIVLVFMVAYYNQAGWIADIALL 532

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           +N+   L +++ LGA LTL  IAGIVL IG+AVD+N+L+ E I+ E  + +    S+  G
Sbjct: 533 INLFFLLGVMASLGAVLTLSGIAGIVLSIGMAVDANVLIYEGIKAELAEGKPFAQSIRDG 592

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           F  + + I DSN+T L+  ++L+ FG G V GFA T+ L +L S+F+AI I R ++    
Sbjct: 593 FKHSLTAIIDSNVTTLLTGIILYTFGTGLVLGFATTLVLGLLTSLFSAIFITRLLLE--- 649

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
           +  K         +            F+  R     IS +     +      G   GIDF
Sbjct: 650 QKLKNGKTFAFATNLTKNWFKDNDFDFVSQRRRFYVISGIIIAIGVGSFIFKGFGLGIDF 709

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD---SVAQT 632
           KGG    V     VD   +R+N++ +       + F G+    +   Y   D      Q 
Sbjct: 710 KGGRSYVVRFENNVDADALRANMDDVLGSTTEVKTFGGQDQVKITTPYLIEDTTPEADQK 769

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
              ++++         + I ++  VGP ++++ +   +  V+++  A  +YI IRF +  
Sbjct: 770 AEAKILEATQKIANNPAKIVSSNKVGPTMAKDTLWSAVYAVLLALAANFVYILIRFKRVA 829

Query: 692 FALGAITTLILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           F+ GA+ +L  D+   L  F+LF       ++ +   + A+LT+IGYS+ND VV+YDR+R
Sbjct: 830 FSYGAVMSLAHDVVIILAIFSLFNGWLPWSLDIDQAFIGAILTMIGYSMNDTVVIYDRIR 889

Query: 746 KNMK-LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
             +    +   S   +I+ ++N TL R+  T ++  + ++ + ++GG+VI  F   M  G
Sbjct: 890 DYLADEKSRGQSLSTVINNALNSTLSRTAVTGISVILVLIVLMIFGGAVIRGFTFCMLLG 949

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830
           ++V   SS+F+AAPI++ +     KN
Sbjct: 950 VIVGTYSSLFVAAPIVVDLLQRSQKN 975



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/201 (20%), Positives = 77/201 (38%), Gaps = 15/201 (7%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKKEGIGVFSMRQIQNKIT 99
           +  ++LGLDL+GG H+VLEV   D + G                            +   
Sbjct: 74  ERELNLGLDLQGGMHVVLEVAPADILKGMAGGNARSAAFQS--ALKKAGEDKSANNSTFI 131

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
             F  +  +      +                +  + + +     I +        I  +
Sbjct: 132 NRFVSAYKEAAPNTSLASVFA-------TSANRGKINSNSSDSDVIKML----KTEIDGS 180

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
           I+++ +I + RID+ G++   IQRL   +R+L++LPG  +P R+R+LL   AK+ F +V 
Sbjct: 181 IDRAFQITQARIDKFGVTNPNIQRLPGQNRVLVELPGVDNPERVRRLLSGAAKLEFAEVY 240

Query: 219 PNNSKKGFMFGVRFLRDSDGN 239
                   + G+         
Sbjct: 241 LTQELGAGLEGLGRYLTQQAE 261


>gi|312131489|ref|YP_003998829.1| proteiN-export membrane protein secd [Leadbetterella byssophila DSM
           17132]
 gi|311908035|gb|ADQ18476.1| protein-export membrane protein SecD [Leadbetterella byssophila DSM
           17132]
          Length = 969

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 208/793 (26%), Positives = 375/793 (47%), Gaps = 33/793 (4%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVN 123
           ++G        +++ + K G+   ++ +    N+I +        E +   ++   +   
Sbjct: 175 IDGAFDRAYKVIQTRVDKFGVSNANLSKIPGTNRIQVELPGVDNPERVRKLLSGSAKLEF 234

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            ++     + +          ++       +  S A   + +     +     ++S    
Sbjct: 235 CEVY--TLQEISPNFERFTSLLMKIDAENKKGSSTAAAATTDTTTNSLASALQAKSDSSA 292

Query: 184 LGSHRILIQLPGE------------QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           L S      L               +D SRL  ++     M                   
Sbjct: 293 LDSTANANSLMNMFIVTPQGLAIKTKDTSRLNSIMKRPDAMGIFPADMTFLYDVNPIEGT 352

Query: 232 FLRDSDGNQYLVE--DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              +   N Y ++      + G  +  A  ++DP T KP V +  + +GAR++ E+T  N
Sbjct: 353 STTEDLVNIYPIKNFGNAPLGGEVITEARQDYDPMTGKPNVSMQMNTVGARKWKELTAKN 412

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
            G+ +A++LD  V +AP +N  IP+G + I+G+F+IE A  LA +L+AG LP    IVEE
Sbjct: 413 TGRSIAIILDNYVYSAPNVNGEIPNGSSSITGSFSIEQAQDLANVLKAGKLPAPTTIVEE 472

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
             VGA +GS ++  G  + + GLV +++F+++ Y   G +A+ ++ +N+IL L +++  G
Sbjct: 473 AVVGASVGSQALNAGVISSLVGLVAVLIFVVMYYSSAGWIANLALIVNLILLLGIMASFG 532

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           AT+TLP IAG+VL +G++VD+N+L+ ER++EE    ++   ++ +GF  A  +I DS +T
Sbjct: 533 ATMTLPGIAGMVLSVGMSVDANVLIYERVKEELAAGKNFATAIALGFKNAMPSIIDSQLT 592

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           ++I  V+LF FG G V+GFA T+ + I  S+F AI + R +   +I+  K  +       
Sbjct: 593 SVITGVILFIFGTGLVKGFATTLLIGIGTSLFCAIFVSRLIFDNLIKKGKTINFRTA--- 649

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               +     I F++ R     +S +  +  I  +   G + G+DFKGG        + V
Sbjct: 650 WTEKLFGDTNIDFIKNRNRFYTVSGILIVAGIISIAVRGFSLGVDFKGGRTFEAKFEKNV 709

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL----EMVKKKITEI 645
           +   +R  ++++  G        G  + +        D            E+ K   +  
Sbjct: 710 NTDEIRDAVQNVFPGSAVEVKTYGGFDRVKITSAYKIDDTDIQTDETLKSELSKAIASVN 769

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY-FALGAITTLILDI 704
                + +T  VG  I+++ I   +  VI + I   IYI IRF+   F  GA+  LI D+
Sbjct: 770 GNKGEVVSTSKVGANIAQDTIWASVKAVIYAIILTFIYILIRFRNQAFGWGAVLALIHDV 829

Query: 705 TKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISF 757
              LG F++F       ++ +   + AVLTL+GYS+ND +V+YDR+R+ M   +  + S 
Sbjct: 830 AIILGIFSIFHGWLPVSLDIDQAFIGAVLTLMGYSLNDTIVIYDRIREYMAEKSNQTQSI 889

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             +I+ ++N TL R+  T  A  I +  + ++GG  I  F   M  G++V   SS+FI+A
Sbjct: 890 ETVINNALNSTLSRTAVTGFATLIVLFVLLIFGGETIRGFIFCMFVGVIVGTYSSLFISA 949

Query: 818 PILLFIYDWRAKN 830
           P ++   + +AK 
Sbjct: 950 PFVVDALNRKAKK 962


>gi|255689969|ref|ZP_05413644.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Bacteroides finegoldii DSM 17565]
 gi|260624576|gb|EEX47447.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Bacteroides finegoldii DSM 17565]
          Length = 1004

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 217/828 (26%), Positives = 377/828 (45%), Gaps = 68/828 (8%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122
           V   ++   + LR+ + + G+   +++ +++   +I +     +  E +   +       
Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-------------------------- 156
             +     +    + + + ++  +L++                                 
Sbjct: 232 FWETYTAKEVLPSMQSADAKLRAILAEETTTDGDTIETAVLTEATPVETKAVSAADSLAA 291

Query: 157 --------SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                   S     +ME ++++   + + +      G            D ++   +   
Sbjct: 292 ALKGDTTASEKPSVNMEELKKQYPLLSMLQLNSSGQGPVIGYANYKDTADINKYLAMPEI 351

Query: 209 TAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
            A++     L        F    +              K  + G  +  A   FD  +  
Sbjct: 352 KAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFDQYSKP 411

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V ++ +  GARR+ ++T+ NIG+ +A+VLD  V +AP +N  I  G++QI+G+FT E 
Sbjct: 412 A-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGHFTPEQ 470

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-W 386
           A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M  +YG   
Sbjct: 471 AKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYGFIP 530

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G+VA+ ++FLN   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  +
Sbjct: 531 GMVANGALFLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGK 590

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
            V  +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + IL+S FTA+ +
Sbjct: 591 GVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFFTAVFM 650

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
            R +    +   K +++         L        FM      + I     I  I     
Sbjct: 651 TRLVYEHFLSKDKWQNLTFTTKISKNL-MANTHFDFMGTNKKSLIIVSAVIIVCIGSFAI 709

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            GL+  IDF GG    V    PV+   VR  + S            G     VR+     
Sbjct: 710 RGLSQSIDFTGGRNFKVQFENPVEPEQVRELISSKFGDANVSVIAIGTDKKTVRISTNYR 769

Query: 627 DSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRELIR 667
                  V   ++  +                    +     +I +++ VGP I+ ++  
Sbjct: 770 IEDGGNNVDSEIESYLYETLKPLLTQNIDLATFIDRDNHTGGSIVSSQKVGPSIADDIKT 829

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNL 720
             I  V+++ IA+ +YI IRF+   +++G+I  L  D    +G ++L      F +E + 
Sbjct: 830 GAIWSVVLALIAIGLYILIRFRNIAYSIGSIAALTCDTIMIIGAYSLFWGILPFSLEIDQ 889

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T + A+LT IGYS+NDKVV++DR+R+   LY      R L + S+N TL R++ TS++  
Sbjct: 890 TFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINTSLSTL 948

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           I +L + + GG  I SFA  M  G+V+   SS+FIA+PI       + 
Sbjct: 949 IVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNFMKNKK 996



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/354 (14%), Positives = 107/354 (30%), Gaps = 44/354 (12%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ I   F     K     K++                  L     ++ +    +  
Sbjct: 119 INSQDDIITLFIREYHKAAPEAKLSELFAT-----------QQLKDKVNQKSTDTEVEKV 167

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
           +   +  A+E S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 168 LRAEVKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           A + F +          M        +   +    D   I    L  AT           
Sbjct: 228 ANLEFWETYTAKEVLPSMQSADAKLRAILAEETTTDGDTIETAVLTEATPVETKAVSAAD 287

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +  +       + + +         L   +         +           
Sbjct: 288 SLAAALKGDTTASEKPSVNMEELKKQYPLLSMLQLNSSGQGPVIGYANYKDTAD 341


>gi|299144764|ref|ZP_07037832.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Bacteroides sp. 3_1_23]
 gi|298515255|gb|EFI39136.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Bacteroides sp. 3_1_23]
          Length = 1007

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 221/833 (26%), Positives = 385/833 (46%), Gaps = 75/833 (9%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122
           V   ++   + LR+ + + G+   +++ +++   +I +     +  E +   +       
Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +     +    + + + ++  VL+Q         A++ + E           S S   
Sbjct: 232 FWETYTAKEVLPAMQSADAKLRAVLAQETGADST--AVDSTKEAPLAEATPAKKSVSAAD 289

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L +         E + +     +     +     L ++ +   +    +   +D N+YL
Sbjct: 290 SLAAALKGDATTTEDNSTANLAEIKKQYPLLAILQLNSSGQGPVIGYANYKDTADINKYL 349

Query: 243 V----------------------------------------EDKVEISGIHLNGATANFD 262
                                                      K  + G  +  A   FD
Sbjct: 350 AMPEVKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 409

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
             +    V ++ +  GARR+ ++T+ NIG+ +A+VLD  V +AP +N  I  G++QI+G+
Sbjct: 410 QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 468

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           FT E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M ++
Sbjct: 469 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGVFSFVVALILLMIYMCMM 528

Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           YG   G++A+ ++FLN    L +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE
Sbjct: 529 YGFIPGMIANGALFLNFFFVLGVLSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 588

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  + V  +L  G+S A+S IFDSN+T++I  V+LF FG G +RGFA T+ + IL+S F
Sbjct: 589 LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGVILFNFGTGPIRGFATTLIIGILVSFF 648

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
           TA+ + R +    +   K+ ++         L        FM      + I++   +  I
Sbjct: 649 TAVFMTRIVYEHFMNKDKLLNLTFTTPVSRNL-MTNTRFDFMGTNKKSLIITVAIILVCI 707

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                 GL+  IDF GG    V    PV+   +R  + S            G     VR+
Sbjct: 708 GSFAMRGLSQSIDFTGGRNFKVQFENPVEPEQIRELISSKFGDANVSVIAIGTDKKTVRI 767

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKIS 662
                   A   V   ++  + E +     Q                   +++ VGP I+
Sbjct: 768 STNYRIEDAGNDVDSQIEAYLYETLKPVLTQNITLATFIDRDNHTGGSIVSSQKVGPSIA 827

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715
            ++    I  V+++ IA+ +YI IRF+   +++G+I  L  D    +G ++L      F 
Sbjct: 828 DDIKTGAIYSVVLALIAIGLYILIRFRNIAYSIGSIVALSCDTIMIIGAYSLLWGIVPFS 887

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +E + T + A+LT IGYS+NDKVV++DR+R+   LY      R L + S+N TL R++ T
Sbjct: 888 LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINT 946

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S++  I +L + + GG  I SFA  M  G+V+   SS+FIA+PI   +   + 
Sbjct: 947 SLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 999



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 99/281 (35%), Gaps = 44/281 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ I   F     K     K++              K  +   +++ E+  VL    
Sbjct: 119 VNSQDDIITLFVREYHKAAPNAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
               +  A+E S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           A + F +          M        +   Q    D   + 
Sbjct: 228 ANLEFWETYTAKEVLPAMQSADAKLRAVLAQETGADSTAVD 268


>gi|160884107|ref|ZP_02065110.1| hypothetical protein BACOVA_02083 [Bacteroides ovatus ATCC 8483]
 gi|156110449|gb|EDO12194.1| hypothetical protein BACOVA_02083 [Bacteroides ovatus ATCC 8483]
          Length = 1007

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 220/833 (26%), Positives = 385/833 (46%), Gaps = 75/833 (9%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122
           V   ++   + LR+ + + G+   +++ +++   +I +     +  E +   +       
Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +     +    + + + ++  VL+Q         A++ + E           S S   
Sbjct: 232 FWETYTAKEVLPAMQSADAKLRAVLAQETDADST--AVDSTKEAPLAEATPAKKSVSAAD 289

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L +         E + +     +     +     L ++ +   +    +   +D N+YL
Sbjct: 290 SLAAALKGDATTTEDNSTANLAEIKKQYPLLAILQLNSSGQGPVIGYANYKDTADINKYL 349

Query: 243 V----------------------------------------EDKVEISGIHLNGATANFD 262
                                                      K  + G  +  A   FD
Sbjct: 350 AMPEVKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 409

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
             +    V ++ +  GARR+ ++T+ NIG+ +A+VLD  V +AP +N  I  G++QI+G+
Sbjct: 410 QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 468

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           FT E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M ++
Sbjct: 469 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGVFSFVVALILLMIYMCMM 528

Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           YG   G++A+ ++FLN    L +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE
Sbjct: 529 YGFIPGMIANGALFLNFFFVLGVLSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 588

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  + V  +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + IL+S F
Sbjct: 589 LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFF 648

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
           TA+ + R +    +   K+ ++         L        FM      + I++   +  I
Sbjct: 649 TAVFMTRIVYEHFMNKDKLLNLTFTTPVSRNL-MTNTRFDFMGTNKKSLIITVAIILVCI 707

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                 GL+  IDF GG    V    PV+   +R  + S            G     VR+
Sbjct: 708 GSFAMRGLSQSIDFTGGRNFKVQFENPVEPEQIRELISSKFGDANVSVIAIGTDKKTVRI 767

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKIS 662
                   A   V   ++  + E +     Q                   +++ VGP I+
Sbjct: 768 STNYRIEDAGNDVDSQIEAYLYETLKPVLTQNITLATFIDRDNHTGGSIVSSQKVGPSIA 827

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715
            ++    I  V+++ IA+ +YI IRF+   +++G+I  L  D    +G ++L      F 
Sbjct: 828 DDIKTGAIYSVVLALIAIGLYILIRFRNIAYSIGSIVALSCDTIMIIGAYSLLWGIVPFS 887

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +E + T + A+LT IGYS+NDKVV++DR+R+   LY      R L + S+N TL R++ T
Sbjct: 888 LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINT 946

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S++  I +L + + GG  I SFA  M  G+V+   SS+FIA+PI   +   + 
Sbjct: 947 SLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 999



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/249 (19%), Positives = 94/249 (37%), Gaps = 44/249 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ I   F     K     K++              K  +   +++ E+  VL    
Sbjct: 119 VNSQDDIITLFVREYHKAAPNAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
               +  A+E S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVL 218
           A + F +  
Sbjct: 228 ANLEFWETY 236


>gi|237718981|ref|ZP_04549462.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. 2_2_4]
 gi|229451759|gb|EEO57550.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. 2_2_4]
          Length = 1007

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 220/833 (26%), Positives = 385/833 (46%), Gaps = 75/833 (9%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122
           V   ++   + LR+ + + G+   +++ +++   +I +     +  E +   +       
Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +     +    + + + ++  VL+Q         A++ + E           S S   
Sbjct: 232 FWETYTAKEVLPAMQSADAKLRAVLAQETGADST--AVDSTKEAPLAEATPAKKSVSAAD 289

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L +         E + +     +     +     L ++ +   +    +   +D N+YL
Sbjct: 290 SLAAALKGDATTTEDNSTANLAEIKKQYPLLAILQLNSSGQGPVIGYANYKDTADINKYL 349

Query: 243 V----------------------------------------EDKVEISGIHLNGATANFD 262
                                                      K  + G  +  A   FD
Sbjct: 350 AMPEVKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 409

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
             +    V ++ +  GARR+ ++T+ NIG+ +A+VLD  V +AP +N  I  G++QI+G+
Sbjct: 410 QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 468

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           FT E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M ++
Sbjct: 469 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGVFSFVVALILLMIYMCMM 528

Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           YG   G++A+ ++FLN    L +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE
Sbjct: 529 YGFIPGMIANGALFLNFFFVLGVLSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 588

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  + V  +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + IL+S F
Sbjct: 589 LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFF 648

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
           TA+ + R +    +   K+ ++         L        FM      + I++   +  I
Sbjct: 649 TAVFMTRIVYEHFMNKDKLLNLTFTTPVSRNL-MTNTRFDFMGTNKKSLIITVAIILVCI 707

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                 GL+  IDF GG    V    PV+   +R  + S            G     VR+
Sbjct: 708 GSFAMRGLSQSIDFTGGRNFKVQFENPVEPEQIRELISSKFGDANVSVIAIGTDKKTVRI 767

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKIS 662
                   A   V   ++  + E +     Q                   +++ VGP I+
Sbjct: 768 STNYRIEDAGNDVDSQIEAYLYETLKPVLTQNITLATFIDRDNHTGGSIVSSQKVGPSIA 827

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715
            ++    I  V+++ IA+ +YI IRF+   +++G+I  L  D    +G ++L      F 
Sbjct: 828 DDIKTGAIYSVVLALIAIGLYILIRFRNIAYSIGSIVALSCDTIMIIGAYSLLWGIVPFS 887

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +E + T + A+LT IGYS+NDKVV++DR+R+   LY      R L + S+N TL R++ T
Sbjct: 888 LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINT 946

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S++  I +L + + GG  I SFA  M  G+V+   SS+FIA+PI   +   + 
Sbjct: 947 SLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 999



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 99/281 (35%), Gaps = 44/281 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ I   F     K     K++              K  +   +++ E+  VL    
Sbjct: 119 VNSQDDIITLFVREYHKAAPNAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
               +  A+E S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           A + F +          M        +   Q    D   + 
Sbjct: 228 ANLEFWETYTAKEVLPAMQSADAKLRAVLAQETGADSTAVD 268


>gi|255531324|ref|YP_003091696.1| bifunctional preprotein translocase subunit SecD/SecF [Pedobacter
           heparinus DSM 2366]
 gi|255344308|gb|ACU03634.1| protein-export membrane protein SecD [Pedobacter heparinus DSM
           2366]
          Length = 990

 Score =  341 bits (873), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 206/818 (25%), Positives = 360/818 (44%), Gaps = 59/818 (7%)

Query: 70  LQMYSDELRSFLKKEGIGVFSMR--QIQNKITLSFADSRFKENIADKVTLFLQGVNSK-- 125
           +      +RS +   G+   +M+  +  N+I +     + KE +   +    +    +  
Sbjct: 177 IDRSFIIIRSRIDGFGVVSPNMQKQEGTNRILIEMPGVQDKERVHKLLQGSAELQFWQVY 236

Query: 126 -------------------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
                              L            T  +    L+          ++      
Sbjct: 237 QNEEVYPVLENINKTLALTLKDTTTATGAAKDTTAKSGSKLAGLAKKADAKDSLSLKNNE 296

Query: 167 IRQRIDQIGISESTIQRLGSHRI------LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
             +      +      +  + +       ++    ++D +++          +       
Sbjct: 297 AAKSNPLFAVLTPPTYQSENGQPALRPGPVVGWTAQKDTAKVNAFFKRPEIAAIIPQSYK 356

Query: 221 NSKKGFMFGVRFLRDSDGNQYL------VEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
                    +     S   +        ++ K ++ G  ++    +   +  KP V +  
Sbjct: 357 FMWSAKPADLGVANTSKIFELYAIKVTSLDGKPDLGGEAISD-ARHDYDQKGKPEVTMYM 415

Query: 275 DEMGARRFFEVTR-----DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              GA ++ ++T       N  K +A+VLD  V +AP +   IP+G + I+GNFT+    
Sbjct: 416 TGDGAAKWKKITAEASADANNKKAIAIVLDNTVYSAPTVQNEIPNGISSITGNFTVNDTQ 475

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            LA +L+AG LP    IV E  VG  LG  +I+ G  + V   V+I++FM + Y K G V
Sbjct: 476 DLANILKAGKLPAPARIVGEFVVGPSLGEVAIHNGLLSFVLAFVVILIFMALYYNKAGWV 535

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ +N+   + +L  LGA LTLP IAGIVL IGL+VD+NIL+ ER+REE    +S  
Sbjct: 536 ANLALVINLFFIMGILVSLGAVLTLPGIAGIVLVIGLSVDANILIFERVREELTLGKSTP 595

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++  GF  A S+I DSN+T L+  V+L+ FG G V+GFA T+ + IL S+F A+ I R 
Sbjct: 596 AAIKEGFKHAMSSIIDSNVTVLVLGVILYVFGSGPVQGFATTLCIGILSSLFCAVLISRL 655

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +   ++  K   +               IA  F+  R     IS +  +      F HG 
Sbjct: 656 IFDTLLDKKANITFG---NKYTIHAFKNIAFNFVGHRKLYYTISSIIIVLGFIFYFKHGG 712

Query: 570 -NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY---QP 625
            N GIDFKGG    V  ++ +    V++ L ++     +     G  N L          
Sbjct: 713 LNLGIDFKGGRTYIVHFDKGMHTEDVKAQLAAVFPESETIVKTAGADNELKITTTFHITD 772

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
            D  A   V   +K  + +     TI++ E VGP I+ +++      ++ S + M IYI 
Sbjct: 773 SDIQADKIVENALKAGLAKTGVNYTIESNEKVGPIIASDIVYSAYGAILFSCLVMFIYIV 832

Query: 686 IRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKV 738
           +RF K  + LGA+  L  D+   L F+ +      F +E     +AA+LT++GY++ + V
Sbjct: 833 VRFKKLNYGLGAVIALFHDVLLVLSFYTILDGVLPFSLEIGQDFIAAILTVMGYTMTETV 892

Query: 739 VVYDRMRKNMKLYTT----SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           VV+DR+R+ +               LI+ ++N TL R++ TS+  F  +L + ++GG+ I
Sbjct: 893 VVFDRIREKLAESGKEDLHGKERETLINFALNSTLSRTILTSLTVFFVLLVIFIFGGASI 952

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             F   +  G ++   SS+ I+ PI+L + + + K+ +
Sbjct: 953 RGFIFALLIGRIIGTYSSLCISTPIVLDLGEAKVKDKK 990



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/195 (25%), Positives = 79/195 (40%), Gaps = 14/195 (7%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96
                  I LGLDL+GG ++ +E+   + V        D   +F K        +     
Sbjct: 67  QFCKSKEIKLGLDLKGGMNVTMEISLGELVKSLASNTDDV--NFNKALSNAQQQLNAGGK 124

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
                F +   K      +  F        N D  K L    +  E+   LS+       
Sbjct: 125 DFISLFVNEYEKLAPGKNLVDFFS------NQDNAKLLKPNASNNEVKSFLSKEAT---- 174

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
             AI++S  IIR RID  G+    +Q+   ++RILI++PG QD  R+ +LL  +A++ F 
Sbjct: 175 -SAIDRSFIIIRSRIDGFGVVSPNMQKQEGTNRILIEMPGVQDKERVHKLLQGSAELQFW 233

Query: 216 KVLPNNSKKGFMFGV 230
           +V  N      +  +
Sbjct: 234 QVYQNEEVYPVLENI 248


>gi|146300012|ref|YP_001194603.1| bifunctional preprotein translocase subunit SecD/SecF
           [Flavobacterium johnsoniae UW101]
 gi|57236803|gb|AAW49014.1| SecDF [Flavobacterium johnsoniae UW101]
 gi|146154430|gb|ABQ05284.1| SecDF [Flavobacterium johnsoniae UW101]
          Length = 991

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 187/826 (22%), Positives = 352/826 (42%), Gaps = 50/826 (6%)

Query: 52  GGSHLVLE-VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQ--NKITLSFAD 104
           GG    +        +   +    +     LR  + K G+   +++++    +I +    
Sbjct: 160 GGIDFQMTDAQAQKVIKRKVDESIESAYKVLRERIDKFGVTQPNIQKLGETGRILVELPG 219

Query: 105 SRFKENIADKVTLFLQGVNSKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
           ++  + I   +    Q    +     +    L+      + + V                
Sbjct: 220 AKDVDRIKKLLGGKAQLEFWETFKIEEVGNFLVAANEALKKTEVKKTETKAVAKDSLNAL 279

Query: 163 SMEIIRQRIDQIGISES--TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
             +  +  +D    +        +     ++     +D + +                 +
Sbjct: 280 LTDNSKDSLDAKKGNNPLFDKMIVQGGGPVLGYFATKDTAAINGYFKRPDIRILLGADQH 339

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVE---------DKVEISGIHLNGATANFDPKTHKPVVD 271
           N+K  +                VE         +   +SG  +  A   FD      V  
Sbjct: 340 NAKFVWSKPTTIKDAKAKEVEAVELYALKGNRDNVPAMSGGVVTDAKDTFDQMGKPAVSM 399

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAG 329
               +          R    K    ++   ++ +     +  I  G+++I+G+F +    
Sbjct: 400 QMNSQGAKVWEELTGRAFSQKGYIAIVLDNIVYSAPGVTSGPIAGGRSEITGSFDVAETK 459

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            LA +L AG LP   +I++   VG  LG  +I  GT + V G +L+ ++M+  YGK G  
Sbjct: 460 DLANVLNAGKLPASADIIQSTVVGPSLGQAAIDAGTISSVLGFLLVCVWMVFYYGKAGWY 519

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ LN++    +++  G  LTLP IAGIVL +G AVD+NI++ ER +EE R+ +S+ 
Sbjct: 520 ANLALLLNLLFLFGIMASFGFVLTLPGIAGIVLTLGTAVDANIIIYERAKEELREGKSLS 579

Query: 450 CSLDMG--FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
            ++     +  A  +I D+N+T ++   +LF FG G ++GFA+T+ + I+ S+FT+I I 
Sbjct: 580 EAVAASYGWHGAMRSIIDANVTHVLTGAILFIFGTGPIKGFALTLLIGIVTSLFTSIFIA 639

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
           R  +   I  K   +   +    +F       I+  +  +     SI+  +    + F +
Sbjct: 640 RIFIDRNIAGKADLTFSTSITKNWFTNFHFDFIKVKKFTYIF--SSIVTVVSLTSIFFIN 697

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP-- 625
           GL+ G+DF GG    V   +P+D +VV   L +     +  +    +    +  +Y+   
Sbjct: 698 GLDEGVDFVGGRTFQVKFEKPIDATVVSDELSAAFGTPVEAKILGDDDQLKITTKYKIKE 757

Query: 626 ----GDSVAQTRVLEMVKKKITEIVPLSTIQNTE----------IVGPKISRELIRKGIV 671
                D     ++ + ++K          I + +           VG  IS ++      
Sbjct: 758 DGVAIDEEVNQKLYKALQKYYPNTSYDKFINSFDGKKVGVLQASKVGASISEDIKTNSYW 817

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVA 724
            V+ +   + +Y+ + F+ W ++LGAI  +  D+   LG ++L      F +E +   +A
Sbjct: 818 AVLGAMAVIFLYLMVSFRKWQYSLGAIAAVAHDVIFVLGIYSLCYKFMPFHMEMDQHFIA 877

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT+IGYS+ND V+V+DR+R+ +       SF D+++ SIN TL R++ TS+   I +L
Sbjct: 878 AILTVIGYSMNDTVIVFDRVREFIIGNRKG-SFEDIVNASINTTLSRTLNTSLMMIIVLL 936

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            M ++GG  I  F   M  GI+V   SS+FIA P+L+       K+
Sbjct: 937 TMFIFGGESIRGFIFAMLIGIIVGTYSSLFIATPVLVDTISSDEKH 982



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 101/250 (40%), Gaps = 42/250 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNR----------------- 43
           M+N   +     +   + +      F+  ++     +    N                  
Sbjct: 1   MQNKGLIKFFAILFALVSIYQLSFTFVANNVKGEAKAFAGDNPDKELKYLDSIGKEKVFS 60

Query: 44  ---------------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
                          ++ GLDL GG +++L++   D + G      + + +    + +  
Sbjct: 61  LGFTDFTYNEVKNKQLNKGLDLEGGINVILQISVKDVLKGLANNSKNPVFN----KSLAD 116

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            +     NK  L+     F+ N    V L    + +  ++     +    T+ +     +
Sbjct: 117 ATANLEGNKTYLNKFFEAFEANSKGTVKLASPDIFANRSLQGDGGIDFQMTDAQ-----A 171

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLG 207
           Q  I + +  +IE + +++R+RID+ G+++  IQ+   + RIL++LPG +D  R+++LLG
Sbjct: 172 QKVIKRKVDESIESAYKVLRERIDKFGVTQPNIQKLGETGRILVELPGAKDVDRIKKLLG 231

Query: 208 TTAKMSFHKV 217
             A++ F + 
Sbjct: 232 GKAQLEFWET 241


>gi|269127428|ref|YP_003300798.1| protein-export membrane protein SecD [Thermomonospora curvata DSM
           43183]
 gi|268312386|gb|ACY98760.1| protein-export membrane protein SecD [Thermomonospora curvata DSM
           43183]
          Length = 761

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 198/710 (27%), Positives = 349/710 (49%), Gaps = 23/710 (3%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +I +        +    + ++++E++R+R+D +G++ES+I R G  RI+++LP  QDP
Sbjct: 37  GTQIVLETKDGPNVKANRESTDRALEVLRKRVDALGVAESSITRSGERRIIVELPDVQDP 96

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
            R  + +G TA+++ H V  N+ K     G + L D DG   L++          + + +
Sbjct: 97  KRAAEAVGRTAQLTAHPVRANDGKPDKKNGEQILPDEDGRPILLKKAALSGAQIRSASAS 156

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP------ 313
                     + + F   G R + ++T +   K          +    +  +        
Sbjct: 157 FDQQNMQGWYITVDFRGDGGRIWQKITAEAACKSDPDDRRIAFVLDGKVISSPVVQEDVP 216

Query: 314 ------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                  G  QI+G F+   A  LAA+++ GSLP+ + I+E+R VG  LG ++I     A
Sbjct: 217 CNVGITGGSTQITGQFSAREAKELAALIQGGSLPVPVEIIEQRVVGPTLGEEAIQASWQA 276

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            V G+VL  LF+I +Y   G +A  ++    +++ A L  +GATLTLP +AG VL IG+A
Sbjct: 277 AVIGIVLTGLFIIWIYRLVGFLATLALAAYGVISYAALVAMGATLTLPGLAGFVLAIGMA 336

Query: 428 VDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           VD+N+LV ER REE      + +  +L +GF +A+S I DSNIT ++A  +LFF   G V
Sbjct: 337 VDANVLVFERAREEYAAVPRRGMRPALVIGFQKAWSAIADSNITTVLAAGLLFFLAAGPV 396

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLIPDCIAIQ 541
           RGF +T+ + +L S+ +A+ + R +  + +  + +         +   R     D     
Sbjct: 397 RGFGVTLTIGVLASLVSALLVTRVLAEWAVSRRPIAKRPALTGLSKTGRVRDWLDRKQPD 456

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            MR +   + +S L    SI  +   GLN+G++F GG Q+    ++ +D++  R+ +   
Sbjct: 457 LMRRKTLWLTVSGLLVAGSIAGIVIQGLNFGVEFTGGRQVVYSTSQRMDINDARAAVADA 516

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                  Q    +   +     +  ++       ++ +          T +  E++GP +
Sbjct: 517 GFPRAVVQTAGTDGEDISIRTEKLTNAEVD----KLQQALEKAGGGTVTKERDELIGPSL 572

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL +K ++ + ++  A LIY+ +RF++ F   A+  +  D+    G FA  G   +  
Sbjct: 573 GSELRKKALIALGVALAAQLIYLAVRFRFTFGAAAVLAMFHDVIVVTGVFAWLGKPIDGV 632

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            +AA+LT+IGYSVND VVV+DR+R+  +       F  + ++   +T+ R+V T M A  
Sbjct: 633 FLAALLTIIGYSVNDSVVVFDRIRELWRAAPEER-FAKIANRGALQTVPRTVNTGMGAIF 691

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  +A+ GG  +  FAI +  GIVV   S++F A P+ +         A
Sbjct: 692 ILAALALLGGDSLTDFAIALLLGIVVGTYSTVFTATPLAIVFQARSKTPA 741



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 59/451 (13%), Positives = 113/451 (25%), Gaps = 37/451 (8%)

Query: 1   MRNNP-WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M     W  +L   I    + +AL                      LGLDLRGG+ +VLE
Sbjct: 1   MSRPLMWRALLALAIIAGSIFVAL-----------------TQPAKLGLDLRGGTQIVLE 43

Query: 60  V-DEDDFVNGF--LQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKV 115
             D  +            + LR  +   G+   S+ +    +I +   D +  +  A+ V
Sbjct: 44  TKDGPNVKANRESTDRALEVLRKRVDALGVAESSITRSGERRIIVELPDVQDPKRAAEAV 103

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q     +  +  K       +K    +L   +   ++      S   IR       
Sbjct: 104 GRTAQLTAHPVRANDGKP-----DKKNGEQILPDEDGRPILLKKAALSGAQIRSASASFD 158

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                   +            Q  +                VL        +       +
Sbjct: 159 QQNMQGWYITVDFRGDGGRIWQKITAEAACKSDPDDRRIAFVLDGKVISSPVVQEDVPCN 218

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM-----GARRFFEVTRDNI 290
                   +   + S        A     +    V+I    +     G        +  +
Sbjct: 219 VGITGGSTQITGQFSAREAKELAALIQGGSLPVPVEIIEQRVVGPTLGEEAIQASWQAAV 278

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
              +   L    +   V   A  +  A    ++    A      L   +  +    +   
Sbjct: 279 IGIVLTGLFIIWIYRLVGFLATLALAAYGVISYAALVAMGATLTLPGLAGFVLAIGMAVD 338

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                                   +V+       +    A     +  +L   LL  L A
Sbjct: 339 ANVLVFERAREEYAAVPRRGMRPALVI-----GFQKAWSAIADSNITTVLAAGLLFFLAA 393

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
                    + +G+  ++ S +LV   + E 
Sbjct: 394 GPVRGFGVTLTIGVLASLVSALLVTRVLAEW 424


>gi|323343526|ref|ZP_08083753.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella
           oralis ATCC 33269]
 gi|323095345|gb|EFZ37919.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella
           oralis ATCC 33269]
          Length = 1006

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 210/831 (25%), Positives = 379/831 (45%), Gaps = 69/831 (8%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122
           V G +    + +R+ + + G+   ++++    Q +I +     R  E +   +       
Sbjct: 166 VQGAIDNSFNVVRTRIDQFGVVQPNIQKLEGQQGRIMVEMPGIREPERMRKLLQGSANLE 225

Query: 123 NS-----------------KLNVDPKKNLLVTTTEKEISIV---------------LSQN 150
                              +L     +            +                    
Sbjct: 226 FWETYNAEEVIPYLQQLDTRLAAGETETDTTAAKSAADKVQTTQAKAATTTKAQPKFKLQ 285

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT- 209
           + D   +   E S         Q  +             ++     +D + + +L+ +  
Sbjct: 286 SDDDKTADIKENSAAQTAVLKKQHPLLSILQPTGAGSLSVVGYANVRDTAEVNKLIHSAV 345

Query: 210 --AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE-DKVEISGIHLNGATANFDPKTH 266
               +     L  ++K+      +   +    +      +  + G  +  A   F+  T 
Sbjct: 346 AKQILPPDLKLLWSAKQADGIKAKNFFELHALKVTTNTGRAPLEGDVVTDAKDQFNHLTG 405

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
            P V ++ +  GARR+  +T+ NIGK +A+VLDG V +AP +N  I  G++ I+G+FTIE
Sbjct: 406 SPEVSMTMNSDGARRWAALTKANIGKAIAIVLDGVVYSAPRVNGEISGGESAITGHFTIE 465

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GK 385
               LA  L++G +P    IV+E  VG  LG+ SI +G  + +   +L++++M+++Y   
Sbjct: 466 DTKDLANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGVISFIIAFILLMIYMVMMYDFI 525

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++A+ ++ +N+  TL +L+   A LT+  IAG+VL +G AVD+N+L+ ER +EE R  
Sbjct: 526 PGMIANGALLINLFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERTKEELRTG 585

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           + +  ++  G+  A+S I DSN+T+L+  ++L+ FG G +RGFA T  + I+ S F+A+ 
Sbjct: 586 KGLRQAMAAGYGNAFSAILDSNVTSLLTGIILYVFGTGPIRGFATTWMIGIVCSFFSAVY 645

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           + R +    ++  +  +++        L     A +FM         +++  I  I    
Sbjct: 646 LTRLVYEHQLKKDRWMNLNFTTRFSRNL-MQDKAYRFMAMYKKTFAFAVVAVIVFIGSFI 704

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
             GL   IDF GG    V   +PV+   VR+ L        +     G  N  +R+    
Sbjct: 705 VRGLAQSIDFTGGRNYVVQFEKPVEPEEVRTVLAKAFPESTTGALALGTDNKTIRISTNY 764

Query: 626 GDSVAQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISREL 665
                   + + V+ K+                     +I    +I ++  VGP +++++
Sbjct: 765 KIESNSPTIDDEVETKLYNALKADGLVSQKNVQDFKNPDIRQGGSIISSTKVGPSVAKDI 824

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG------IEF 718
               IV VII+ +A+ +YI IRF+   F++G+   L LD    +G F+L        +E 
Sbjct: 825 TNGAIVSVIIALVAIFLYILIRFRNVAFSVGSTIALALDALTVIGLFSLLQGFVPFSLEI 884

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           + T + A+LT+IGYS+NDKVVV+DR+R+N++L+      + L + SIN+TL R++ TS +
Sbjct: 885 DQTFIGAILTVIGYSINDKVVVFDRIRENLRLHPK-QDIQTLFNDSINQTLSRTINTSFS 943

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             I +L +   GG  I  FA  M  G++    SSIFIA+PI   +   + K
Sbjct: 944 TLIVLLCILFLGGKSIQPFAFAMTMGVIFGTLSSIFIASPIAYLVMGRKIK 994



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 93/244 (38%), Gaps = 38/244 (15%)

Query: 1   MRNNPWLVILYSMICCIGLL---IALPNFLPQSMLDRFPSAMPK---------------- 41
           M+N   ++++  ++    +     +   +   S  ++    + +                
Sbjct: 1   MQNKGIVIVIAVLLTLASIFYLSFSAATYYYDSQAEKLKDPVAQQDYKDAVKYLGIYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG +++LE+   D +       +D   +F+K            Q  
Sbjct: 61  KCLETQIGLGLDLKGGMNVILEISVPDVIEMLADHKTDA--AFVKSMKEARAEEETSQKD 118

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               F ++  K     ++                   L      + +    +  +   + 
Sbjct: 119 FITLFVNAYHKNAPGHRLAEIFAT-----------QQLQGKVSPQSTDSEVEKVLRSEVQ 167

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++R RIDQ G+ +  IQ+      RI++++PG ++P R+R+LL  +A + F 
Sbjct: 168 GAIDNSFNVVRTRIDQFGVVQPNIQKLEGQQGRIMVEMPGIREPERMRKLLQGSANLEFW 227

Query: 216 KVLP 219
           +   
Sbjct: 228 ETYN 231


>gi|298373633|ref|ZP_06983622.1| protein-export membrane protein SecD/protein-export membrane protein
            SecF [Bacteroidetes oral taxon 274 str. F0058]
 gi|298274685|gb|EFI16237.1| protein-export membrane protein SecD/protein-export membrane protein
            SecF [Bacteroidetes oral taxon 274 str. F0058]
          Length = 1009

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 199/863 (23%), Positives = 363/863 (42%), Gaps = 96/863 (11%)

Query: 64   DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
            D V   +    + L S + + G+   +++++     +I +     +  E +   +     
Sbjct: 145  DEVKSAIDNSFNVLSSRIDRFGVIQPNIQRLGGEEGRILVELPGVKEPERVRKLLQGSAN 204

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVL--------------------------------- 147
                +     +   ++   +  I  +                                  
Sbjct: 205  LEFWETYTAAELVGVIQQADAAIRDIQGGKVLPTDTAATAQTTTATADTTAMAQTTDASQ 264

Query: 148  --SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ---------RLGSHRILIQLPGE 196
              + +  + +      ++ +      D+    E+                +  ++ +   
Sbjct: 265  KATDSLAESLKQSLASETGQAATDVADEKAYQEALKNNPLIAVLGGLQNGNTPVLGVVAV 324

Query: 197  QDPSRLRQL--------LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            +D +R+           L          V P    K                     +  
Sbjct: 325  KDTARVMSYFRMPQISRLLPRDLKLSWTVKPQIEGKDTRDNSDRYGLIALKVTSRNGQAP 384

Query: 249  ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
            +SG  +  A  +FD  T++ +V +  +  GA  +  +T+ NIG+ +A+ LD  + + P  
Sbjct: 385  LSGNVITDARVDFDQTTNQTLVSMKMNSEGAAIWARLTKANIGRAIAISLDNYIYSYPAP 444

Query: 309  NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
             + I  G+++ISG FT E A  LA +L +G +P    I++E  VG  LG  +I  G  + 
Sbjct: 445  TEQITGGESRISGRFTPEEAKDLANVLNSGKMPAPARIIQEDVVGPSLGQTAINNGLISF 504

Query: 369  VAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               L++I ++M++ YG   GL+AD  +  N    L +L+   A LTLP IAGIVL +G+A
Sbjct: 505  AVALLIIFIYMMMYYGLIPGLIADLVLIANTFFMLGILASFSAVLTLPGIAGIVLTLGMA 564

Query: 428  VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
            VD+N+L+ ER REE    +++  +++ GF  A S I D  IT L+  ++LF FG G+V+G
Sbjct: 565  VDANVLIYERCREELALGKNLKKAVEEGFGNALSAILDGQITTLLIGIILFIFGTGSVKG 624

Query: 488  FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
            FA T+ + I  S+FTA+   R +   ++   +  +I                  F+  R 
Sbjct: 625  FATTLVIGIFTSLFTALFFSRMLFDTLLSRNREWNISFTTNLTKN-WFKGFHFDFIGKRK 683

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
             G  IS    +  +  LF +GL  GIDF GG    +   +P++   VR  L     G   
Sbjct: 684  IGYIISACLVVVIVVSLFVNGLKPGIDFSGGNSYVIRFEQPINADDVREKLSDAFEGYSL 743

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLE------------------------------- 636
            +    GE N +        +        +                               
Sbjct: 744  YVITMGEANQIRISTNFVDNKAEGDNEGKIETILYEKLKDYLNPAVTKEMFVHRYVNRGG 803

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALG 695
              +    E      IQ ++ VGP I+ ++I++    +++S I + IYI IRF K+ +++G
Sbjct: 804  NYELANLEQGENYGIQQSQNVGPTIASDMIKRAAWAILLSLIVIFIYILIRFKKYAYSVG 863

Query: 696  AITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            ++ +L  D    +G + L      F ++ + + +AA+LT+IGYS+ND VV++DR+R+N+ 
Sbjct: 864  SVASLFHDAFFMVGVYTLLYKVMPFSLDIDQSFIAAILTIIGYSINDTVVIFDRVRENLT 923

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
            L+      ++ ++ ++N TL R+  TS    + +L M ++GG VI  F   +  G +   
Sbjct: 924  LFPKR-DMKEQMNNALNATLSRTFSTSFTVILVLLAMFIFGGEVIRGFMFALLMGSLSGV 982

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
             S++FIAAP+   I        +
Sbjct: 983  YSTLFIAAPLAYDIQRKEKSKIK 1005



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 20/183 (10%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQNK 97
             +  I+LGLDL+GG  + LE+   D +       +  + R  L        S       
Sbjct: 46  AREREINLGLDLKGGMDVTLEISVPDVLIYLSDHNNTPIFRQALDNAKKRNSS------- 98

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               F     +E         L  + S L    K+ + +     ++  VL        + 
Sbjct: 99  ---DFLTVFKQEFERIDPNARLSTIFSTL--ALKEKIRLDMKNDQVISVLRDE-----VK 148

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++  RID+ G+ +  IQR      RIL++LPG ++P R+R+LL  +A + F 
Sbjct: 149 SAIDNSFNVLSSRIDRFGVIQPNIQRLGGEEGRILVELPGVKEPERVRKLLQGSANLEFW 208

Query: 216 KVL 218
           +  
Sbjct: 209 ETY 211


>gi|293368709|ref|ZP_06615314.1| protein-export membrane protein SecD [Bacteroides ovatus SD CMC 3f]
 gi|292636174|gb|EFF54661.1| protein-export membrane protein SecD [Bacteroides ovatus SD CMC 3f]
          Length = 1007

 Score =  340 bits (872), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 219/833 (26%), Positives = 385/833 (46%), Gaps = 75/833 (9%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122
           V   ++   + LR+ + + G+   +++ +++   +I +     +  E +   +       
Sbjct: 172 VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +     +    + + + ++  VL+Q         A++ + E           + S   
Sbjct: 232 FWETYTAKEVLPAMQSADAKLRAVLAQETGADST--AVDSTKEAPLAEATPAKKNVSAAD 289

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L +         E + +     +     +     L ++ +   +    +   +D N+YL
Sbjct: 290 SLAAALKGDATTTEDNSTANLAEIKKQYPLLAILQLNSSGQGPVIGYANYKDTADINKYL 349

Query: 243 V----------------------------------------EDKVEISGIHLNGATANFD 262
                                                      K  + G  +  A   FD
Sbjct: 350 AMPEVKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 409

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
             +    V ++ +  GARR+ ++T+ NIG+ +A+VLD  V +AP +N  I  G++QI+G+
Sbjct: 410 QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 468

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           FT E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M ++
Sbjct: 469 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGVFSFVVALILLMIYMCMM 528

Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           YG   G++A+ ++FLN    L +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE
Sbjct: 529 YGFIPGMIANGALFLNFFFVLGVLSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 588

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  + V  +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + IL+S F
Sbjct: 589 LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFF 648

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
           TA+ + R +    +   K+ ++         L        FM      + I++   +  I
Sbjct: 649 TAVFMTRIVYEHFMNKDKLLNLTFTTPVSRNL-MTNTRFDFMGTNKKSLIITVAIILVCI 707

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                 GL+  IDF GG    V    PV+   +R  + S            G     VR+
Sbjct: 708 GSFAMRGLSQSIDFTGGRNFKVQFENPVEPEQIRELISSKFGDANVSVIAIGTDKKTVRI 767

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKIS 662
                   A   V   ++  + E +     Q                   +++ VGP I+
Sbjct: 768 STNYRIEDAGNDVDSQIEAYLYETLKPVLTQNITLATFIDRDNHTGGSIVSSQKVGPSIA 827

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715
            ++    I  V+++ IA+ +YI IRF+   +++G+I  L  D    +G ++L      F 
Sbjct: 828 DDIKTGAIYSVVLALIAIGLYILIRFRNIAYSIGSIVALSCDTIMIIGAYSLLWGIVPFS 887

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +E + T + A+LT IGYS+NDKVV++DR+R+   LY      R L + S+N TL R++ T
Sbjct: 888 LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINT 946

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S++  I +L + + GG  I SFA  M  G+V+   SS+FIA+PI   +   + 
Sbjct: 947 SLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 999



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 99/281 (35%), Gaps = 44/281 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVWL 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALAEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ I   F     K     K++              K  +   +++ E+  VL    
Sbjct: 119 VNSQDDIITLFVREYHKAAPNAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
               +  A+E S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           A + F +          M        +   Q    D   + 
Sbjct: 228 ANLEFWETYTAKEVLPAMQSADAKLRAVLAQETGADSTAVD 268


>gi|189465266|ref|ZP_03014051.1| hypothetical protein BACINT_01612 [Bacteroides intestinalis DSM
           17393]
 gi|189437540|gb|EDV06525.1| hypothetical protein BACINT_01612 [Bacteroides intestinalis DSM
           17393]
          Length = 999

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 215/821 (26%), Positives = 376/821 (45%), Gaps = 61/821 (7%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122
           V   +    + LR+ + + G+   +++ +++   +I +     +  E +   +       
Sbjct: 172 VKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231

Query: 123 NSKLNVDPK--------------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
             +                                       ++    +    ++ A++ 
Sbjct: 232 FWETYNAKDVAPYLQAADNKLRSILANEAPADSAAVDSTAAPVMAQATSTADSLAAALKG 291

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHR----ILIQLPGEQDPSRLRQLLGT---TAKMSFH 215
             +     + QI      +  L  +      ++     +D + + + L      A++   
Sbjct: 292 ENKAQTVDLAQIKKEHPLLAVLQVNSSGQGPVVAYANYKDTAEINKYLSMREIQAELPKD 351

Query: 216 KVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
             L        +    +              +  + G  +  A   +D       V +S 
Sbjct: 352 LRLKWGVSAYEYDPKGQTFELYAIRSTERNGRAPLEGDVVVSAKDEYDQFGKPA-VSMSM 410

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
           +  G+RR+ ++T+ NIGK +A+VLDG V +AP +N  I  G +QI+G+FT E A  LA +
Sbjct: 411 NTDGSRRWAQLTKQNIGKSIAIVLDGYVYSAPNVNTEITGGNSQITGHFTPEQAKDLANV 470

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFS 393
           L++G +P    IV+E  VG  LG  SI  G  + +  LVL++++M  +YG   G+VA+ +
Sbjct: 471 LKSGKMPAPARIVQEDIVGPSLGQASINAGVFSFIVALVLLMVYMCTMYGFIPGMVANGA 530

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           + LN+  TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  + V  +L 
Sbjct: 531 LVLNMFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEELRAGKGVKKALA 590

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + ILIS FTA+ + R +  +
Sbjct: 591 DGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTAVFMTRLVYEY 650

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
            +   K  ++  +      L    +   FM      + I+ +  +  I  LF  GL+  I
Sbjct: 651 FMNKDKWLNLTFSSKISKNL-MANVHFDFMGGNKKWLTITGVILVICIGSLFVRGLSQSI 709

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           DF GG    V     V+   VR  + S            G     VR+            
Sbjct: 710 DFTGGRNFKVQFENAVEPEQVRELISSKFGDANVSVIAIGTDKKTVRISTNYRIEEDGNN 769

Query: 634 VLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRELIRKGIVGVI 674
           V   ++  + E +     Q                   +++ VGP I+ ++    +  V+
Sbjct: 770 VDSEIEAYLYETLKPVLTQNITLETFIDRENHTGGSIVSSQKVGPSIADDIKTSAMWSVV 829

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVL 727
           ++ IA+ +YI IRF+   +++G++  L  D    LG ++L      F +E + T + A+L
Sbjct: 830 LALIAIGLYILIRFRNIAYSVGSVAALTSDTLMILGAYSLCWGWMPFSLEIDQTFIGAIL 889

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
           T IGYS+NDKVV++DR+R+   LY      + L + S+N TL R++ TS++  I +L + 
Sbjct: 890 TAIGYSINDKVVIFDRVREFFGLYPKR-DKKQLFNDSLNTTLARTINTSLSTLIVLLCIF 948

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + GG  I SFA  M  G+V+   SS+FIA+PI   +   + 
Sbjct: 949 ILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYMMLKNKK 989



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 50/291 (17%), Positives = 103/291 (35%), Gaps = 46/291 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ-------------------------SMLDRF 35
           M+N  ++ +   ++  + +     +F+ +                         +    F
Sbjct: 1   MQNKGFVKVFAILLTLVCVFYLSFSFVTRHYNNKAKEYAKGDLKLEQDYLDSLSNEKVWF 60

Query: 36  PSAMPKN----RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
            +   K      ISLGLDL+GG +++LEV   D +       +DE  +           +
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKTDEAFNQALATAAKQA-I 119

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQN 150
               + ITL              V  + +   +++L+       L     ++ S    + 
Sbjct: 120 SSQDDVITL-------------FVREYHRIAPDARLSELFATQQLKDKVNQKTSDAEVEK 166

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208
            +   +  A++ S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  
Sbjct: 167 VLRSEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQG 226

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           +A + F +         ++        S        D   +          
Sbjct: 227 SANLEFWETYNAKDVAPYLQAADNKLRSILANEAPADSAAVDSTAAPVMAQ 277


>gi|332668118|ref|YP_004450906.1| protein-export membrane protein SecD [Haliscomenobacter hydrossis DSM
            1100]
 gi|332336932|gb|AEE54033.1| protein-export membrane protein SecD [Haliscomenobacter hydrossis DSM
            1100]
          Length = 1037

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 204/825 (24%), Positives = 350/825 (42%), Gaps = 66/825 (8%)

Query: 64   DFVNGFLQMYSDE----LRSFLKKEGIGVFSMRQIQNK--ITLSFADSRFKENIADKVTL 117
              +       ++     L+  + K G+   ++     +  I +        +   D +  
Sbjct: 186  GVLKQKADQTAELTFRLLKERIDKLGVTGPNVSLDNARALILVELPGIDNPQRARDFLGK 245

Query: 118  FLQGVNSKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +     +    DP      ++ +     + +   + + +     +S  I   ++D +G
Sbjct: 246  AARLEFWNIYRLSDPINPNASSSKQVIEGFIAANEALAKTMGTGKTRSDTIGIVKVDSLG 305

Query: 176  ISESTIQRLGS---------------------------HRILIQLPGEQDP--SRLRQLL 206
             + +  +                                          D   +R     
Sbjct: 306  NALAKNKWTWDSIVQRPADNPLLEVLQINTQGTAPALMGYAEKNRKAIIDTMLARPEAKA 365

Query: 207  GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
                 ++F       +                 +     +  ++G H+  A  + D  + 
Sbjct: 366  QFPRDLTFAWSKDPITDPTTKKPTNVYELYALKKEGNRSQAPLNGDHVIQAFEDSDQNSG 425

Query: 267  KPVVDISFDEMGARRFFEVTRDNIGKPLAVV---LDGRVLTAPVINQAIPSGKAQISGNF 323
            K VV +  D  GA+ +  +T          +   LD  V++ P +N+ I  G +QISG+F
Sbjct: 426  KIVVSLRMDGEGAKTWAAMTTKAAQDNNREIAIVLDDEVISCPGVNEPITGGSSQISGSF 485

Query: 324  TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
             +E A  LA +L  G LP +  I++E  +G  LG+ +I KG   +V   + I+ FM+  Y
Sbjct: 486  NLEEATDLANLLEVGKLPAETRIIQESVIGPSLGASNINKGFGTLVITFLSILAFMVAYY 545

Query: 384  GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
               G+VA  ++ +N+ L L  ++ LG  LTLP IAGIVL IG+AVD+N+++ ERIREE R
Sbjct: 546  AGGGIVAILALIINIFLLLGAMASLGTVLTLPGIAGIVLTIGMAVDANVIIYERIREELR 605

Query: 444  KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
                +  ++  GF  A S I D N+T  I  + L  FG G ++GFAI + L I  ++FT 
Sbjct: 606  SGLGLRDAIQAGFKHAASAIIDGNLTTFIVGIALAVFGLGPIKGFAIVLMLGIATTLFTG 665

Query: 504  ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
            I + R M+ +    K                     + +M  R     IS +F + SI  
Sbjct: 666  ILVSRMMVEYWTEKKGRS--MSFSYPWSSHTLLNQNVDWMGIRKISYAISAVFVVISIIA 723

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            +   G + G+DFKGG    +   + VD   +R +L +        +  D +    V   Y
Sbjct: 724  ILVRGFDLGVDFKGGYSYNIQFEKTVDAEALRQSLTAEFGRTPVVKVVDSDNTLNVVTSY 783

Query: 624  QPGDSVAQTRVLE----------------MVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
               D+    +                     +   +     + I ++  V P I+ ++ R
Sbjct: 784  LIDDTADDAQDRATAKLFAGVNKLAGGNLEEENFKSPDGTGTHITSSGKVDPTIADDISR 843

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF------GIEFNL 720
                  +   + + +YI++RF    + LG I  LI D T  +G FALF       +E + 
Sbjct: 844  SSWKAGLFGLLGIFLYIFLRFSKAKYGLGGIIALIHDATIAIGAFALFHGILPFNMEIDQ 903

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
              +AA+LTL+GYS+ND V+V+DR+R+ +  + T +   DLI+ +IN TL R++ TSM  F
Sbjct: 904  AFIAAILTLLGYSINDTVIVFDRIREYIHKFPT-MKKNDLINAAINSTLSRTIITSMTVF 962

Query: 781  ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            ++VL +  +GG+ I  FA  M  G+V    SSIFIA+PI+  +  
Sbjct: 963  LTVLILFFFGGTSIKGFAFAMMLGVVFGTYSSIFIASPIVADLTK 1007



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 40/177 (22%), Positives = 85/177 (48%), Gaps = 4/177 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
              ++GP +    I KG   ++I+ +++L ++   +     + AI  LI++I   LG  A
Sbjct: 510 QESVIGPSLGASNINKGFGTLVITFLSILAFMVAYYA-GGGIVAILALIINIFLLLGAMA 568

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G    L  +A ++  IG +V+  V++Y+R+R+ ++   + +  RD I           
Sbjct: 569 SLGTVLTLPGIAGIVLTIGMAVDANVIIYERIREELR---SGLGLRDAIQAGFKHAASAI 625

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +  ++  FI  + +AV+G   I  FAI +  GI     + I ++  ++ +  + + +
Sbjct: 626 IDGNLTTFIVGIALAVFGLGPIKGFAIVLMLGIATTLFTGILVSRMMVEYWTEKKGR 682



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/178 (22%), Positives = 76/178 (42%), Gaps = 11/178 (6%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
           +   ++++GLDL+GG  +VL+VD +DF+       +D    F +         R  Q+  
Sbjct: 85  LKGQQLAMGLDLKGGMSVVLQVDLEDFIRSLAANSADPESEFERALKKATQDQRTTQDNY 144

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
              FA          +++      N     D  K  + +    +  I +      Q    
Sbjct: 145 VTLFA------RAYREISGDKPLANLFSRNDALKEEIKSGDPNQKVIGVL----KQKADQ 194

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHR-ILIQLPGEQDPSRLRQLLGTTAKMSFH 215
             E +  ++++RID++G++   +    +   IL++LPG  +P R R  LG  A++ F 
Sbjct: 195 TAELTFRLLKERIDKLGVTGPNVSLDNARALILVELPGIDNPQRARDFLGKAARLEFW 252


>gi|319900797|ref|YP_004160525.1| protein translocase subunit secF;protein translocase subunit secD
           [Bacteroides helcogenes P 36-108]
 gi|319415828|gb|ADV42939.1| protein translocase subunit secF;protein translocase subunit secD
           [Bacteroides helcogenes P 36-108]
          Length = 1001

 Score =  340 bits (872), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 218/833 (26%), Positives = 375/833 (45%), Gaps = 67/833 (8%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIA 112
              +  +   ++   D     LR+ + + G+   +++ +++   +I +     +  E + 
Sbjct: 162 AQVEKVLREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVR 221

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH--------AIEQSM 164
             +         +          + + + ++  VLS                  A+ Q+ 
Sbjct: 222 KLLQGSANLEFWETYNAKDIAPYLQSADAKLRAVLSNEAPADSTVTDSTTVTTPAVAQTT 281

Query: 165 EIIRQRIDQIGISESTIQRL------------------GSHRILIQLPGEQDPSRLRQLL 206
                    +                                 ++     +D + + + L
Sbjct: 282 STADSLAAALKGESKAQTADLAQIKKEHPLLAMLQVNPSGQGPVVAYANYKDTAEINKYL 341

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFD 262
                 +      N       +       +             K  + G  +     +  
Sbjct: 342 SMPEVRAEMPKDLNLKWGVSPYEYDPKAQTFELYAIKSTERNGKAPLEGDVVVN-AKDEY 400

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               KP V +S +  GARR+ ++T+ NIGK +A+VLDG V +AP +NQ I  G +QI+G+
Sbjct: 401 DHYGKPAVSMSMNTDGARRWAQLTKQNIGKSIAIVLDGYVYSAPNVNQEITGGNSQITGH 460

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           FT E A  LA +L++G +P   +IV+E  VG  LG  SI  G  + V  L+L++++M  +
Sbjct: 461 FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCSM 520

Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           YG   G+VA+ ++ LN+  TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE
Sbjct: 521 YGFIPGMVANGALVLNLFFTLGILSSFQAALTMSGIAGMVLALGMAVDANVLIYERTKEE 580

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  + V  +L  G++ A+S IFDSN+T++I  ++LF FG G +RGFA T+ + ILIS F
Sbjct: 581 LRAGKGVKKALSDGYANAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFF 640

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
           TA+ + R      +   K+ ++  +      L    +   FM      + I+ +  +  +
Sbjct: 641 TAVFMTRLFYEHFMGKDKLLNLTFSSKISKNL-MANVHFDFMGRNKLWMTITGIAVVVCL 699

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             L T GL+  IDF GG    V     V+   VR  + S            G     VR+
Sbjct: 700 GFLMTRGLSQSIDFTGGRNFKVQFENKVEPEQVRELISSKFGDANVSVIAIGTDGKTVRI 759

Query: 622 QYQPGDSVAQTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKIS 662
                       V   ++  +                    E     +I +++ VGP I+
Sbjct: 760 STNYRIVEEGNNVDSEIEAYLYDTLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIA 819

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715
            ++    I  V+++ IA+ IYI IRF+   +++G+++ L  D    LG +++      F 
Sbjct: 820 DDIKVSAIWSVVLALIAIGIYILIRFRNIAYSIGSVSALACDTIVILGAYSICWGWMPFS 879

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +E + T + A+LT IGYS+NDKVV++DR+R+   LY     F  L + S+N TL R++ T
Sbjct: 880 LEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKRDKFL-LFNDSLNTTLARTINT 938

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S++  I +L + + GG  I SFA  M  G+VV   SS+F+A+PI       + 
Sbjct: 939 SLSTLIVLLCIFILGGDSIRSFAFAMILGVVVGTLSSLFVASPIAYMFMKNKK 991



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 55/365 (15%), Positives = 115/365 (31%), Gaps = 44/365 (12%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N   + I   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGLVRIFAILLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVYF 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDETFNQ--ALANAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ +   F     K      ++                  L     ++ +    +  
Sbjct: 119 TTSQDDVITLFVREYHKLAPGATLSELFAT-----------QQLKDKVNQKSTDAQVEKV 167

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
           + + +  A++ S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 168 LREEVKAAVDNSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           A + F +         ++        +  +     D        +          T   +
Sbjct: 228 ANLEFWETYNAKDIAPYLQSADAKLRAVLSNEAPADSTVTDSTTVTTPAVAQTTSTADSL 287

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
                 E  A+             LA++        PV+  A     A+I+   ++    
Sbjct: 288 AAALKGESKAQTADLAQIKKEHPLLAMLQVNPSGQGPVVAYANYKDTAEINKYLSMPEVR 347

Query: 330 ILAAM 334
                
Sbjct: 348 AEMPK 352


>gi|255534790|ref|YP_003095161.1| bifunctional preprotein translocase subunit SecD/SecF
           [Flavobacteriaceae bacterium 3519-10]
 gi|255340986|gb|ACU07099.1| Protein-export membrane protein secD/ Protein-export membrane
           protein secF [Flavobacteriaceae bacterium 3519-10]
          Length = 971

 Score =  340 bits (871), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 190/809 (23%), Positives = 360/809 (44%), Gaps = 70/809 (8%)

Query: 61  DEDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADK 114
              + +   ++       + +R+ + K G+   ++++     +I++     +  + +   
Sbjct: 170 QVKNIIENRIELSTGTAYEVIRTRIDKMGVTQPNVQRVPRTGRISVEMPGVKDIDRVKKM 229

Query: 115 VTL-------FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
           +          +Q V   L    + N ++      I +  + N +  +  + ++ +    
Sbjct: 230 LQTSAKLQFWEVQQVQEILPYFEQLNSVIGAKADSIGVPGNTNLVSLLQLNTLKSNGVAN 289

Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
            +  D   +++                       L+       +    K           
Sbjct: 290 VKLSDTAAVNKI----------------------LKSQTAKDLRPQNIKYTQFMWGYKPE 327

Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                       +  +  K  + G   +           + VVD+  D  G++ +  +T 
Sbjct: 328 LSDPNNLVLYAVRGNINQKAPVDGAVES--ARVNYDDLGRIVVDMQMDSKGSKDWKTLTG 385

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            N+ KP+AV LD  V TAP +   IP+G+ QISG+F+ E A  L  +L AG LP    IV
Sbjct: 386 KNVNKPVAVTLDEVVYTAPNVVNEIPNGRTQISGSFSQEEAQDLVNVLGAGKLPAGAKIV 445

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           +   VG  LG++S+  G  + +   V+I+L+M+  YG  G+ A  +I +N+   + ++  
Sbjct: 446 QAEVVGPSLGAESVDAGMYSFIIAFVIIILYMLFYYGGAGVYAVIAISINLFYLMGIMDS 505

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           + ATLTLP IAGIVL + +++D+N++V ER +EE    +++  + + GF  + S I D N
Sbjct: 506 VDATLTLPGIAGIVLSMAMSIDANVIVYERTKEELFAGKNIREAYNEGFKFSLSAIIDGN 565

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           IT+L+  VVL+ FG G ++GFA+T+G+ I++SMFT + + R ++   +   K  S+    
Sbjct: 566 ITSLLTAVVLYIFGTGPIQGFAVTLGIGIILSMFTCVLLTRVLIFSRLEKGKGLSVWTKF 625

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 I     + F+  R +    S + ++  +  +FT G  YG+DFKGG    V    
Sbjct: 626 SKN---IFRNTWVDFIGKRKYAYIFSGIVTLICLASIFTQGFKYGVDFKGGRSYVVRFAN 682

Query: 588 PVDLSVVRSNLESLQIG-----DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE------ 636
           PV       +LE   I      +       G  N L        D  +     +      
Sbjct: 683 PVVADQAAESLEKQFINSEGQVNAVDVKTYGSNNQLKITTDYRVDEESLEADQDVESKLF 742

Query: 637 -----------MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                       + +          + ++  VGP ++ ++   G++ + ++   + +YI 
Sbjct: 743 AGLKQYLPADAKMSEFKDSGANNYGVISSVKVGPTVADDIKSGGVIAMFVALAGIFLYIL 802

Query: 686 IRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKV 738
            RF +W F+ GAI +L+ D    LG ++L      F +E N   +AA+LT++GYS+ND V
Sbjct: 803 FRFKRWQFSTGAIASLVHDAIVILGVYSLLKNVMPFNMEINQDFIAAILTVLGYSINDTV 862

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           +++DR+R+ +     S++   L + SI+ TLGR+  T+   F+ +L + ++GG  +  F 
Sbjct: 863 IIFDRIREYLGE-KKSLTLEGLFNDSISSTLGRTFNTAFMTFLVILAIFIFGGENLRGFM 921

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  G+     S+ FIA+ +   +   +
Sbjct: 922 FALLIGVGFGTYSTWFIASAVSYDLLKKK 950


>gi|281355236|ref|ZP_06241730.1| protein-export membrane protein SecD [Victivallis vadensis ATCC
           BAA-548]
 gi|281318116|gb|EFB02136.1| protein-export membrane protein SecD [Victivallis vadensis ATCC
           BAA-548]
          Length = 849

 Score =  340 bits (871), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 208/740 (28%), Positives = 366/740 (49%), Gaps = 36/740 (4%)

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +   ++ +   +  D            +    + +    +   +  EQ++E +R+R++ 
Sbjct: 114 DLNGGVEFILELVPDDDLLGKFAKEGGAKDRAGMEKQMSAEFDRY-REQAIETLRRRLET 172

Query: 174 --IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS--------- 222
             I  SE T     S  +   +    +  +L +L+  + K+SF  V P +          
Sbjct: 173 QNIFESEITPYGSRSVSLKAPIVSRDEKDKLLKLIKMSCKLSFRLVHPQSEELLKDYDPA 232

Query: 223 ------KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
                        +       G  YLV  + E+ G  +         +  +  + + F+ 
Sbjct: 233 DSAAFLPPPGYEVLSASGGDRGYHYLVAKRPEMDGRSVAR-AMPVRDQFGQTKISLEFNS 291

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GA RF EVT  N+G+ LA+VLDG++  APVI  AI  G A+ISG F+ E A  +A  L 
Sbjct: 292 AGAERFGEVTGKNLGRQLAIVLDGKLYCAPVIQSAITGGSAEISGRFSNEEAKDIADALT 351

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           +GS P ++ +    +    LG+D++  G  A    +VL+ +FM V Y + G++A  ++ +
Sbjct: 352 SGSFPFRIKVTAVYDTAPSLGADNVRNGIIAGALAMVLLTVFMCVYYFRAGVIACLALAV 411

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           NV+L L  ++  GAT+T+P IAG++L +G+AVD+N+L+ ERIREE    +S+  ++D+G+
Sbjct: 412 NVVLILGAMAAFGATMTMPGIAGVILTLGMAVDANVLIFERIREELNGGKSLAAAIDLGY 471

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            +A+S + D N+T L+  ++L   G G V+GFA+++ + ++ S+FTA+ + R +  +++R
Sbjct: 472 EKAFSAVLDGNLTTLLCALILMMLGSGPVKGFAVSLSIGLIASLFTAVCMTRLIFDYMLR 531

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDF 575
           +   K++ +        +    A  F+  R W   +S L    S+ +L   G    G+DF
Sbjct: 532 FFHWKTLKMCH------VFTQPAFNFIGNRKWAFLLSGLLIAGSLAVLAFKGERMFGVDF 585

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIG---DISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            GG ++       V    +   L  +      +    N  G+   L  L         Q 
Sbjct: 586 TGGTRISCSYAEAVSTGELEKVLRPIDPNVRLNYKSNNSAGDNRKLEILIRDRNRPAGQE 645

Query: 633 RVLEMVKKKITEIVPLSTIQ------NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                +  ++ +++     Q      +   VG  +  E  R     ++++ + M +Y+ I
Sbjct: 646 ESAYALSDRVIKLLNSEFPQLRLSDGSESTVGGLVGLETARASAWAIVLALLGMSVYVAI 705

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           R++  FA   I  L+ D+   LG F L G E +L  VAA+LT+IGYS+ND +V++DR+R+
Sbjct: 706 RYEVSFAAAGILALVHDVIIALGIFILMGRELSLPVVAALLTIIGYSINDTIVIFDRIRE 765

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
           + KL+     F ++I+ +IN TL R++ TS   F+ V  M  +GG VI  F + M  GIV
Sbjct: 766 DAKLFP-GKPFGEVINYAINRTLSRTILTSATTFLVVAVMFCFGGIVINDFMLVMMLGIV 824

Query: 807 VAASSSIFIAAPILLFIYDW 826
           +   SSIFIA+PI++  +  
Sbjct: 825 IGTYSSIFIASPIVMSWHRK 844


>gi|288926931|ref|ZP_06420829.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella buccae D17]
 gi|288336290|gb|EFC74673.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella buccae D17]
          Length = 1003

 Score =  340 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 213/829 (25%), Positives = 377/829 (45%), Gaps = 65/829 (7%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVT------ 116
           V   +    + +R+ + K G+   ++++    + +I +     +  E +   +       
Sbjct: 167 VKAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIKEPERMRKLLQGSANLE 226

Query: 117 -------LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
                    +     +L+                     +       +    +  +    
Sbjct: 227 FWETYNAEEVAPYLQQLDQRVANGSHAEADTATADSAAQKQVAAAKQAEPKFKIDKKETD 286

Query: 170 RIDQIGISESTIQRLGSHRILIQ-------------LPGEQDPSRLRQLLGTTAKMSFHK 216
           + +  G++    +    H +L +                 +D + + +++ +        
Sbjct: 287 KAEAAGMAAQQAEATKQHPLLARLQLTGGQSLSLVGYANVRDTAAINKIIYSAVAKQVLP 346

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDI 272
                           +++      L       +  + G  +  A   FD     PVV +
Sbjct: 347 QDLRLMWGAKPADGLKVKNVYELYALKVTTSNGRAPLEGDVITNAKDEFDQFN-NPVVSM 405

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
           S +  GAR++  +T+ NIGK +A+VLDG V +AP +N  I  G +QISGNFTIE    LA
Sbjct: 406 SMNTEGARQWANMTKANIGKAIAIVLDGVVYSAPRVNGEIDGGNSQISGNFTIEDTKDLA 465

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVAD 391
             L++G +P    IV+E  VG  LG+ SI +G  + V   VL++ +M+ +Y    G++A+
Sbjct: 466 NTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIISFVIAFVLLIFYMVAMYNFIPGMIAN 525

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ +NV  TL +L+   A LT+  IAG+VL +G AVD+N+L+ ERI+EE R  + +  +
Sbjct: 526 SALVVNVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRSGKGMKQA 585

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           +D G+S A+S I DSN+T+L+  ++L+ FG G ++GFA T  + I+ S F+A+ + R + 
Sbjct: 586 IDAGYSNAFSAILDSNVTSLLTGIILYIFGTGPIQGFATTWMIGIVCSFFSAVYLTRLVY 645

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
            F +++ K  ++         L       +FM        ++ +     +   F  GL  
Sbjct: 646 EFKLKHDKWLNLKFWTGISKNL-MQGTNYKFMSMYKNTFTLACVAVAVFVISFFVRGLAQ 704

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            IDF GG    V   +P     VR  L +      +     G  N  +R+          
Sbjct: 705 SIDFTGGRNYVVAFEKPTQPEQVRDILTTAFPQATNSAISLGTDNKTIRISTNYKIESNS 764

Query: 632 TRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
             V +  +  +                     +I    +I ++  VGP +++++ R   +
Sbjct: 765 PTVDDEAETMLYTALKKAGLVSQKSVEDFKNPDIRQGGSIISSSKVGPSVAKDVTRGAFI 824

Query: 672 GVIISAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGFFALFG------IEFNLTAVA 724
            V I+ +A+ +YI IRF+   F++GA   L+LD    +G F+L        +E + T + 
Sbjct: 825 SVAIALLAIFVYILIRFRSKAFSIGATVALMLDALTVIGLFSLLQGLLPFSLEIDQTFIG 884

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETLGRSVYTSMAAFIS 782
           AVLT+IGYS+NDKVVV+DR+R+N+KL+        + L + SIN+TL R++ TS++  I 
Sbjct: 885 AVLTVIGYSINDKVVVFDRIRENLKLHPKRAKEDIQGLFNDSINQTLARTINTSVSTLIV 944

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +L +   GG  I  FA  M  G++    SSIFIA+PI   +   + +N 
Sbjct: 945 LLCILFLGGKSIQPFAFAMTLGVIFGTLSSIFIASPIAYLVMGKKIENR 993



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 91/253 (35%), Gaps = 37/253 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N   ++++  ++    +     +        +                          
Sbjct: 1   MQNKGLVIVVAVLLTLASIFYLSFSAATSYYDSQAAKIKDPIAQQDYKDSVKYLGVYPYK 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG +++LE+   D V       +D   +    E           + 
Sbjct: 61  KCLETQIGLGLDLKGGMNVILEISVPDVVETLADHKTDVAFTKSMAEARAEEEKTANSDF 120

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           ITL F ++  K     K+                   L      + S    +  +   + 
Sbjct: 121 ITL-FVNAYHKNAPGHKLAEVFAT-----------QQLQGKVSPQSSDSEVEKALRAEVK 168

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++R RID+ G+ +  IQ+      RI++++PG ++P R+R+LL  +A + F 
Sbjct: 169 AAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIKEPERMRKLLQGSANLEFW 228

Query: 216 KVLPNNSKKGFMF 228
           +         ++ 
Sbjct: 229 ETYNAEEVAPYLQ 241


>gi|298386063|ref|ZP_06995620.1| protein-export membrane protein SecD/protein-export membrane protein
            SecF [Bacteroides sp. 1_1_14]
 gi|298261291|gb|EFI04158.1| protein-export membrane protein SecD/protein-export membrane protein
            SecF [Bacteroides sp. 1_1_14]
          Length = 1010

 Score =  340 bits (870), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 217/834 (26%), Positives = 388/834 (46%), Gaps = 74/834 (8%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122
            V   ++   + LR+ + + G+   +++ +++   +I +     +  E +   +       
Sbjct: 172  VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231

Query: 123  NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              +     +    + + + ++  +LSQ       +           +  +     ++   
Sbjct: 232  FWETYTAKEILPAMQSADSKLRAILSQETAADSTATNATADTIPAAKLAEATPAKKAVSV 291

Query: 183  RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                   L     ++      + +     +     L ++ +   +    +   +D N+YL
Sbjct: 292  ADSLAATLKGDAKDEKAGANMEEIKKQYPLLAVLQLNSSGQGPVIGYANYKDTADINRYL 351

Query: 243  V----------------------------------------EDKVEISGIHLNGATANFD 262
                                                       K  + G  +  A   FD
Sbjct: 352  SMPEIQSELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 411

Query: 263  PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
              +    V ++ +  GARR+ ++T+ NIG+ +A+VLD  V +AP +N  I  G++QI+G+
Sbjct: 412  QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 470

Query: 323  FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            FT E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M  +
Sbjct: 471  FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSM 530

Query: 383  YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            YG   G+VA+ ++FLN   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE
Sbjct: 531  YGFIPGMVANCALFLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 590

Query: 442  NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
             R  + V  +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + IL+S F
Sbjct: 591  LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFF 650

Query: 502  TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            TA+ + R +    +   K  ++         L+       FM      + I     +  I
Sbjct: 651  TAVFMTRLVYEHFMNKDKWLNLTFTSKISRNLL-VNTRFDFMGTNKKSLIIVSAIILVCI 709

Query: 562  CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS---------FQNFD 612
                  GL+  IDF GG    V    PV+   VR  +      D++          +   
Sbjct: 710  GSFGLRGLSQSIDFTGGRNFKVQFENPVEPEQVRELIADKFGEDVNVNVIAIGTDKKTVR 769

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV-----------GPKI 661
               N+ +  +    DS  ++ + E +K  +T+ + L+T  + +             GP I
Sbjct: 770  ISTNYRIADEGNNVDSEIESYLYETLKPLLTQNITLATFIDRDNHTGGSIVSSQKVGPSI 829

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------F 714
            + ++    +  V+++ IA+ +YI IRF+   +++G+I  L  D    +G ++L      F
Sbjct: 830  ADDIKTGAVWSVVLALIAIGLYILIRFRNIAYSIGSIVALTCDTIMIIGAYSLLWGIVPF 889

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             +E + T + A+LT IGYS+NDKVV++DR+R+   LY      R L + S+N TL R++ 
Sbjct: 890  SLEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTIN 948

Query: 775  TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            TS++  I +L + + GG  I SFA  M  G+V+   SS+FIA+PI   +   + 
Sbjct: 949  TSLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 1002



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 102/290 (35%), Gaps = 44/290 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVML 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        D   +F K         
Sbjct: 61  WNWTLKDCREMEISLGLDLKGGMNVILEVSVPDVIRALADNKPD--ENFNKALNEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ I   F     K     K++              K  +   +++ E+  VL    
Sbjct: 119 VNSQDDIITLFVREYQKTAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
               +  A+E S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           A + F +          M        +  +Q    D    +        A
Sbjct: 228 ANLEFWETYTAKEILPAMQSADSKLRAILSQETAADSTATNATADTIPAA 277


>gi|282880540|ref|ZP_06289247.1| protein-export membrane protein SecD [Prevotella timonensis CRIS
            5C-B1]
 gi|281305643|gb|EFA97696.1| protein-export membrane protein SecD [Prevotella timonensis CRIS
            5C-B1]
          Length = 1009

 Score =  340 bits (870), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 215/837 (25%), Positives = 381/837 (45%), Gaps = 74/837 (8%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122
                +    + +R+ + + G+   ++++    + +I +     R  E +   +       
Sbjct: 166  SQAAIDNSFNVVRTRIDQFGVVQPNIQKLEGEEGRIMVEMPGIREPERMRKLLQGSANLE 225

Query: 123  NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ--SMEIIRQRIDQIGISEST 180
              +     +    +   + +++   S       +   + Q  + + +++   +  I E  
Sbjct: 226  FWETFNAEEIIPYLNQLDAQLAHGESVAKDTTAVDSTVAQPKAAQKVKKAQPKFQIKEEN 285

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAK--------------------MSFHKVLPN 220
              +        QL   +    L  +L TT +                    +        
Sbjct: 286  QTKNVQTANDAQLAAAKKEHPLLAILSTTGQNALSCVGYASVRDTAEINRLIHSDIAKQI 345

Query: 221  NSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNGATANFDPKTHKPVV 270
                  +       D    +   E           +  + G  +  A   F+  + +P V
Sbjct: 346  LPADLKLLWSAKPADGLQVKNYYELHALKITTTTGRAPLEGDVITDAADQFNHLSGQPEV 405

Query: 271  DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
             ++ +  GARR+  +T+ NIG+ +A+VLDG V T+P IN  I  G++ I+G+FTIE    
Sbjct: 406  SMTMNTDGARRWSAITKANIGRAVAIVLDGLVYTSPRINGQIDGGQSSITGHFTIEDTKD 465

Query: 331  LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389
            LA  L++G +P    IV+E  VG  LG+ SI +G  +     VL++++MIV+Y    G++
Sbjct: 466  LANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIISFALAFVLLMIYMIVMYNFIPGMI 525

Query: 390  ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
            A+ ++ +NV  TL +L+   A LT+  IAG+VL +G AVD+N+L+ ERI+EE R  + + 
Sbjct: 526  ANCALIVNVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRAGKGMK 585

Query: 450  CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
             ++  G+S A+S IFDSN+T+ I  V+L  FG G +RGFA T  + I  S F+A+ + R 
Sbjct: 586  QAVSAGYSNAFSAIFDSNLTSAITGVILLVFGTGPIRGFATTWLIGIACSFFSAVFLTRL 645

Query: 510  MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
            +  + +   K  ++          +       FM+       I  +  I  I      GL
Sbjct: 646  VYEYKLNKDKWLNLKF-WTGISENMMQNTRYNFMKMFKTSGTIYAIAIIICIGSFVVRGL 704

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG-----------------DISFQNFD 612
            +  IDF GG    V  ++   +  VR  L +                         + F 
Sbjct: 705  SQSIDFTGGRNYVVTVDKATHVENVRGVLNNAFKNTVGKNAGELATTNVIAIGTDGKTFR 764

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKK------------ITEIVPLSTIQNTEIVGPK 660
               N+ +       D  A+T +   + K               +I    +I ++  VGP 
Sbjct: 765  VSTNYNLESNDPQMDDKAETILYNALTKAGMVKQANIEAFKNPDIREGGSIISSSKVGPS 824

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------ 713
            I++++    I  V+I+ I + +YI +RF+   F++G++  LI+D T  +G F+L      
Sbjct: 825  IAKDITNNAIKSVVIALICIFLYILLRFRNIGFSIGSVAALIIDTTMVIGLFSLCYGWIG 884

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            F +E + T + A+LT+IGY +ND VVV+DR+R+N+KL+      +   + SIN+TL R++
Sbjct: 885  FSLEIDQTFIGAILTVIGYDINDSVVVFDRIRENLKLHPK-QDIQKTFNDSINQTLARTI 943

Query: 774  YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS++  I ++P+ + G   I SFA  M  G+ V   SSIF+A+PI   +   + KN
Sbjct: 944  NTSVSTLIVLVPIFILGADSIRSFAFAMIVGVFVGTLSSIFLASPIAYLVLGRKIKN 1000



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 38/242 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPKN--------------- 42
           M+N   +++   ++    +     +       S   +    + +                
Sbjct: 1   MQNKGIVIVTAVLLTLASIFYLSFSAATRYYDSQAAKLKDPIAQQEYKDSVKYLGIYSYQ 60

Query: 43  -----RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG +++LE+   D +       +D    F+K            Q+ 
Sbjct: 61  KCLETQIGLGLDLKGGMNVILEISVPDVIEMLADHKTDP--DFVKSMKEARAEEETSQSD 118

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               F  +  K     ++                   L      + S    +  + +   
Sbjct: 119 FISLFIKAFKKNAPQRRLAEIFAT-----------QQLQGKVNPQSSDAEVEKALRKESQ 167

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++R RIDQ G+ +  IQ+      RI++++PG ++P R+R+LL  +A + F 
Sbjct: 168 AAIDNSFNVVRTRIDQFGVVQPNIQKLEGEEGRIMVEMPGIREPERMRKLLQGSANLEFW 227

Query: 216 KV 217
           + 
Sbjct: 228 ET 229


>gi|29348244|ref|NP_811747.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|253569390|ref|ZP_04846800.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
            sp. 1_1_6]
 gi|29340147|gb|AAO77941.1| protein-export membrane protein SecD/SecF [Bacteroides
            thetaiotaomicron VPI-5482]
 gi|251841409|gb|EES69490.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
            sp. 1_1_6]
          Length = 1010

 Score =  339 bits (869), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 217/834 (26%), Positives = 388/834 (46%), Gaps = 74/834 (8%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122
            V   ++   + LR+ + + G+   +++ +++   +I +     +  E +   +       
Sbjct: 172  VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231

Query: 123  NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              +     +    + + + ++  +LSQ       +           +  +     ++   
Sbjct: 232  FWETYTAKEILPAMQSADSKLRAILSQETAADSTATNATADTIPAAKLAEATPAKKAVSV 291

Query: 183  RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                   L     ++      + +     +     L ++ +   +    +   +D N+YL
Sbjct: 292  ADSLAATLKGDAKDEKAGANMEEIKKQYPLLAVLQLNSSGQGPVIGYANYKDTADINRYL 351

Query: 243  V----------------------------------------EDKVEISGIHLNGATANFD 262
                                                       K  + G  +  A   FD
Sbjct: 352  SMPEIQSELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFD 411

Query: 263  PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
              +    V ++ +  GARR+ ++T+ NIG+ +A+VLD  V +AP +N  I  G++QI+G+
Sbjct: 412  QYSKPA-VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGH 470

Query: 323  FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            FT E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M  +
Sbjct: 471  FTPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSM 530

Query: 383  YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            YG   G+VA+ ++FLN   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE
Sbjct: 531  YGFIPGMVANCALFLNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 590

Query: 442  NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
             R  + V  +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + IL+S F
Sbjct: 591  LRAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFF 650

Query: 502  TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            TA+ + R +    +   K  ++         L+       FM      + I     +  I
Sbjct: 651  TAVFMTRLVYEHFMNKDKWLNLTFTSKISRNLL-VNTRFDFMGTNKKSLIIVSAIILVCI 709

Query: 562  CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS---------FQNFD 612
                  GL+  IDF GG    V    PV+   VR  +      D++          +   
Sbjct: 710  GSFALRGLSQSIDFTGGRNFKVQFENPVEPEQVRELIADKFGEDVNVNVIAIGTDKKTVR 769

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV-----------GPKI 661
               N+ +  +    DS  ++ + E +K  +T+ + L+T  + +             GP I
Sbjct: 770  ISTNYRIADEGNNVDSEIESYLYETLKPLLTQNITLATFIDRDNHTGGSIVSSQKVGPSI 829

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------F 714
            + ++    +  V+++ IA+ +YI IRF+   +++G+I  L  D    +G ++L      F
Sbjct: 830  ADDIKTGAVWSVVLALIAIGLYILIRFRNIAYSIGSIVALTCDTIMIIGAYSLLWGIVPF 889

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             +E + T + A+LT IGYS+NDKVV++DR+R+   LY      R L + S+N TL R++ 
Sbjct: 890  SLEIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTIN 948

Query: 775  TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            TS++  I +L + + GG  I SFA  M  G+V+   SS+FIA+PI   +   + 
Sbjct: 949  TSLSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 1002



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 102/290 (35%), Gaps = 44/290 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVML 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        D   +F K         
Sbjct: 61  WNWTLKDCREMEISLGLDLKGGMNVILEVSVPDVIRALADNKPD--ENFNKALNEAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ I   F     K     K++              K  +   +++ E+  VL    
Sbjct: 119 VNSQDDIITLFVREYQKTAPGAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
               +  A+E S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 172 ----VKAAVENSYNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           A + F +          M        +  +Q    D    +        A
Sbjct: 228 ANLEFWETYTAKEILPAMQSADSKLRAILSQETAADSTATNATADTIPAA 277


>gi|182434927|ref|YP_001822646.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|178463443|dbj|BAG17963.1| putative protein-export membrane protein SecD [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 791

 Score =  339 bits (869), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 192/794 (24%), Positives = 332/794 (41%), Gaps = 74/794 (9%)

Query: 45  SLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITL 100
            LGLDL+GG+ +VL+       +          + LR  +   G+   ++ +   ++I +
Sbjct: 29  RLGLDLQGGTRIVLQARDTATVEADRETTDRTLEVLRQRIDSLGVSEPTLTRSGEDRIIV 88

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
              D +     A+ +    Q     +     +      +  + +                
Sbjct: 89  ELPDVQDPRQAAEVIGRTAQLTFHPVQGPAAEEPEKKPSGSDPTAEPGSPAEPGSTPDPD 148

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
             ++   + R+  +G                       PSRL       A   F      
Sbjct: 149 RLTLPDEQGRVLDLG-----------------------PSRLSGAGVEDATAGF------ 179

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                                      E  G      +  F     +    ++ +     
Sbjct: 180 ---------------------------EAQGGAGWSVSLEFRKDAGQEWKKLTGEAACHP 212

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
              +  R  I     V+   +V  +      +PSG  QI+G+F+ + A  LA +++ G+L
Sbjct: 213 AGDDRRRVAIVLDQKVISSPQVDPSVGCGAGLPSGATQITGSFSADEARDLALLIKGGAL 272

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P+ + IVE+R VG  LG+ +I     A + G     LF+ ++Y  +G +A  ++    ++
Sbjct: 273 PVPVEIVEQRTVGPTLGAAAIDASAQAALIGAAATALFITIVYRLFGALAAVALGAYGVI 332

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSR 458
           + A L  LG TLTLP +AG VL IG+AVD+N+LV ER REE   R  +S+  +L  GF +
Sbjct: 333 SYAALVALGVTLTLPGLAGFVLAIGMAVDANVLVFERAREECADRPKRSLRSALTTGFQK 392

Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           A+S + DSN T LIA  +LFF G G V+GF +T+ + ++ SMF+A+ I RA+       +
Sbjct: 393 AWSAVADSNATTLIAAGLLFFLGSGPVKGFGVTLAIGVIASMFSALVIARALTEIAANSR 452

Query: 519 KMKSID----INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
            +        I               Q  R     + +S      ++  +   G++ G++
Sbjct: 453 FVSDYRNVNGIARPGAVRTWLTRKDPQIFRKPVRWLVVSAALVAVAVAGIVVRGVDLGVE 512

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F GG  +    +RPVD+   R  L +   GD                             
Sbjct: 513 FTGGRLVEYSTSRPVDVETARDTLAAAGFGDAEVTTAGDGD-------LSVRTGKLDNDG 565

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
              ++  + E    +T    E++GP +  EL R  ++ + ++    L Y+ +RF+W FA+
Sbjct: 566 EHALRAALAEEGGETTKVRDELIGPSLGDELRRNALIALGVAVAVQLAYLAVRFRWTFAV 625

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            ++  ++ D+   +G FA  G   +   +AA+LT+IGYSVND VVV+DR+R+ +      
Sbjct: 626 SSVAAMVHDVILVVGAFAWLGRPVDGIFLAALLTVIGYSVNDSVVVFDRVRE-LWGANRR 684

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
                +  +++ +T+ R+V T M A   +  +AV GG  +  FA+ +  GIVV   SS+F
Sbjct: 685 TPLDTIARRAVLQTVPRTVNTGMGALFILAALAVLGGDSLADFALALLIGIVVGTWSSVF 744

Query: 815 IAAPILLFIYDWRA 828
            A P  L +     
Sbjct: 745 TAVPGALLLERNAK 758


>gi|319640220|ref|ZP_07994946.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 3_1_40A]
 gi|317388207|gb|EFV69060.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 3_1_40A]
          Length = 995

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 209/826 (25%), Positives = 373/826 (45%), Gaps = 65/826 (7%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ ++    +I +     +  E +   +     
Sbjct: 166 EEVKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSAN 225

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI---- 176
               +     +    +++ +  +  +L+  +           ++ + +            
Sbjct: 226 LEFWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVATDTVAVAQASAISAADSLAA 285

Query: 177 -------SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN--------- 220
                  S S           +    + +P+    ++G        +V            
Sbjct: 286 ALKGETASNSAAMEQMKKEHPLASVLQLNPNGYGAVVGYADYKDTAQVNQYLAMKEVKEM 345

Query: 221 ----------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
                          F    R              +  + G  +     +   + +KP V
Sbjct: 346 LPKDLRLKWGVKAADFDKQGRIFELYAIKSTERNGRAPLEGDVITD-AKDEYDQFNKPCV 404

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +S +  GARR+  +T++N+GK +A+VLDG V +AP +N  I  G +QI+GNFT E    
Sbjct: 405 SMSMNTDGARRWAVLTKNNVGKAIAIVLDGYVYSAPNVNGEITGGHSQITGNFTPEVTKD 464

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLV 389
           LA +L++G +P    IV+E  VG  LG +SI +G  + V  L+L++++M  +YG   G+V
Sbjct: 465 LANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMV 524

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ +N   TL +L+   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  ++V 
Sbjct: 525 ANCALVVNFFFTLGILTSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKTVK 584

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +L  G+S A+S IFDSN+T++I  ++LF+FG G +RGFA T+ + IL S FTA+ + R 
Sbjct: 585 AALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRI 644

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +    +   K  ++         L    +   FM        +     +  I   F  GL
Sbjct: 645 VYEHFMNKDKWLNLTFTTGISKNL-MQNVNYNFMGMMKRSFTVFGAIIVICIISFFIRGL 703

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
              IDF GG    V   + V+   VR  L+     D       G     +R+      + 
Sbjct: 704 AQSIDFTGGRNFVVQFEQQVEPETVRDLLKKKITEDNVQAIALGTDKKTIRITTNYRINE 763

Query: 630 AQTRVLEMVKKKITEIVPLST---------------------IQNTEIVGPKISRELIRK 668
               +   +++ + + +                         I +++ VGP I+ ++   
Sbjct: 764 DSPTIDSEIEEFLYQSLKDGNLLGEGTTLEIFIDRDNRVGGSIISSQKVGPSIADDIKTS 823

Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721
            +  V+ + +A+ +YI +RF+   +++GA   L +D    +G ++L      F +E + T
Sbjct: 824 AVWSVLFALVAIGLYILLRFRNVAYSVGATVALAVDTILIIGAYSLCYGWVPFSLEIDQT 883

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            + A+LT IGYS+NDKVV++DR+R+   LY    +   L + S+N TL R++ TS++  I
Sbjct: 884 FIGAILTAIGYSINDKVVIFDRIREFFGLYPKR-NRMQLFNDSLNTTLARTINTSLSTLI 942

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +L + V GG  I SFA  M  G+V+   SSIFIAAPI       +
Sbjct: 943 VLLCIFVLGGDSIRSFAFAMILGVVIGTLSSIFIAAPIAYLTMGNK 988



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 83/176 (47%), Gaps = 3/176 (1%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             +IVGP + +E I +GI+  +++ I ++IY+   +     + A   L+++   TLG   
Sbjct: 482 QEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMVANCALVVNFFFTLGILT 541

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F     ++ +A ++  +G +V+  V++Y+R ++ ++      + +  +    +      
Sbjct: 542 SFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKTVKAALADGYSNAFSAI 598

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +++ + I+ + +  +G   I  FA  +  GI+ +  +++F+   +     +   
Sbjct: 599 FDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRIVYEHFMNKDK 654



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 116/361 (32%), Gaps = 40/361 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAM------------------ 39
           M+N  ++ +   ++  + +     +F+ +       + P                     
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRYHMDKAAQDPKGEAHYLDSMQNEKVYLGSYT 60

Query: 40  ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95
                +  I LGLDL+GG +++LEV   D V       +DE  +  K            Q
Sbjct: 61  LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKTDEAFN--KAVAEASKQSITSQ 118

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           +     F     K+    K+               K  +   +++ E+  VL +      
Sbjct: 119 DDFITLFVKEYKKQAPNGKLAELFAT------QQLKDKVTTRSSDSEVEKVLREE----- 167

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
           +  AI+ S  ++R RID+ G+++  IQ       RI+++LPG ++P R+R+LL  +A + 
Sbjct: 168 VKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSANLE 227

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           F +         ++  V                 +                    +    
Sbjct: 228 FWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVATDTVAVAQASAISAADSLAAAL 287

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
             E  +               +V+         V+  A     AQ++    ++    +  
Sbjct: 288 KGETASNSAAMEQMKKEHPLASVLQLNPNGYGAVVGYADYKDTAQVNQYLAMKEVKEMLP 347

Query: 334 M 334
            
Sbjct: 348 K 348


>gi|150003562|ref|YP_001298306.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           vulgatus ATCC 8482]
 gi|254881210|ref|ZP_05253920.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. 4_3_47FAA]
 gi|294777629|ref|ZP_06743080.1| protein-export membrane protein SecD [Bacteroides vulgatus PC510]
 gi|149931986|gb|ABR38684.1| protein-export membrane protein SecD/SecF [Bacteroides vulgatus
           ATCC 8482]
 gi|254834003|gb|EET14312.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. 4_3_47FAA]
 gi|294448697|gb|EFG17246.1| protein-export membrane protein SecD [Bacteroides vulgatus PC510]
          Length = 995

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 209/826 (25%), Positives = 373/826 (45%), Gaps = 65/826 (7%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ ++    +I +     +  E +   +     
Sbjct: 166 EEVKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSAN 225

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI---- 176
               +     +    +++ +  +  +L+  +           ++ + +            
Sbjct: 226 LEFWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVATDTVAVAQASAISAADSLAA 285

Query: 177 -------SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN--------- 220
                  S S           +    + +P+    ++G        +V            
Sbjct: 286 ALKGETASNSAAMEQMKKEHPLASVLQLNPNGYGSVVGYADYKDTAQVNQYLAMKEVKEM 345

Query: 221 ----------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
                          F    R              +  + G  +     +   + +KP V
Sbjct: 346 LPKDLRLKWGVKAADFDKQGRIFELYAIKSTERNGRAPLEGDVITD-AKDEYDQFNKPCV 404

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +S +  GARR+  +T++N+GK +A+VLDG V +AP +N  I  G +QI+GNFT E    
Sbjct: 405 SMSMNTDGARRWAVLTKNNVGKAIAIVLDGYVYSAPNVNGEITGGHSQITGNFTPEVTKD 464

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLV 389
           LA +L++G +P    IV+E  VG  LG +SI +G  + V  L+L++++M  +YG   G+V
Sbjct: 465 LANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMV 524

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ +N   TL +L+   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  ++V 
Sbjct: 525 ANCALVVNFFFTLGILTSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKTVK 584

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +L  G+S A+S IFDSN+T++I  ++LF+FG G +RGFA T+ + IL S FTA+ + R 
Sbjct: 585 AALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRI 644

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +    +   K  ++         L    +   FM        +     +  I   F  GL
Sbjct: 645 VYEHFMNKDKWLNLTFTTGISKNL-MQNVNYNFMGMMKRSFTVFGAIIVICIISFFIRGL 703

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
              IDF GG    V   + V+   VR  L+     D       G     +R+      + 
Sbjct: 704 AQSIDFTGGRNFVVQFEQQVEPETVRDLLKKKITEDNVQAIALGTDKKTIRITTNYRINE 763

Query: 630 AQTRVLEMVKKKITEIVPLST---------------------IQNTEIVGPKISRELIRK 668
               +   +++ + + +                         I +++ VGP I+ ++   
Sbjct: 764 DSPTIDSEIEEFLYQSLKDGNLLGEGTTLEIFIDRDNRVGGSIISSQKVGPSIADDIKTS 823

Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721
            +  V+ + +A+ +YI +RF+   +++GA   L +D    +G ++L      F +E + T
Sbjct: 824 AVWSVLFALVAIGLYILLRFRNVAYSVGATVALAVDTILIIGAYSLCYGWVPFSLEIDQT 883

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            + A+LT IGYS+NDKVV++DR+R+   LY    +   L + S+N TL R++ TS++  I
Sbjct: 884 FIGAILTAIGYSINDKVVIFDRIREFFGLYPKR-NRMQLFNDSLNTTLARTINTSLSTLI 942

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +L + V GG  I SFA  M  G+V+   SSIFIAAPI       +
Sbjct: 943 VLLCIFVLGGDSIRSFAFAMILGVVIGTLSSIFIAAPIAYLTMGNK 988



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 83/176 (47%), Gaps = 3/176 (1%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             +IVGP + +E I +GI+  +++ I ++IY+   +     + A   L+++   TLG   
Sbjct: 482 QEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMVANCALVVNFFFTLGILT 541

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F     ++ +A ++  +G +V+  V++Y+R ++ ++      + +  +    +      
Sbjct: 542 SFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKTVKAALADGYSNAFSAI 598

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +++ + I+ + +  +G   I  FA  +  GI+ +  +++F+   +     +   
Sbjct: 599 FDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRIVYEHFMNKDK 654



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 57/361 (15%), Positives = 116/361 (32%), Gaps = 40/361 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAM------------------ 39
           M+N  ++ +   ++  + +     +F+ +       + P                     
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRYHMDKAAQDPKGEAHYLDSMQNEKVYLGSYT 60

Query: 40  ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95
                +  I LGLDL+GG +++LEV   D V       +DE  +  K            Q
Sbjct: 61  LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKTDEAFN--KAVAEASKQSITSQ 118

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           +     F     K+    K+               K  +   +++ E+  VL +      
Sbjct: 119 DDFITLFVKEYKKQAPNGKLAELFAT------QQLKDKVTTRSSDSEVEKVLREE----- 167

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
           +  AI+ S  ++R RID+ G+++  IQ       RI+++LPG ++P R+R+LL  +A + 
Sbjct: 168 VKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSANLE 227

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           F +         ++  V                 +                    +    
Sbjct: 228 FWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVATDTVAVAQASAISAADSLAAAL 287

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
             E  +               +V+         V+  A     AQ++    ++    +  
Sbjct: 288 KGETASNSAAMEQMKKEHPLASVLQLNPNGYGSVVGYADYKDTAQVNQYLAMKEVKEMLP 347

Query: 334 M 334
            
Sbjct: 348 K 348


>gi|224023544|ref|ZP_03641910.1| hypothetical protein BACCOPRO_00246 [Bacteroides coprophilus DSM
           18228]
 gi|224016766|gb|EEF74778.1| hypothetical protein BACCOPRO_00246 [Bacteroides coprophilus DSM
           18228]
          Length = 988

 Score =  339 bits (869), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 208/827 (25%), Positives = 373/827 (45%), Gaps = 56/827 (6%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK---ITLSFADSRFKENIADK 114
           +E    + V   ++   + LR+ + + G+   +++ ++ +   I +     +  E +   
Sbjct: 160 VEAVLREEVKAAVENSYNVLRTRIDRFGVAQPNIQTLEGRMGRIMVELPGIKEPERVRKL 219

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +         +         ++ + +     +L+   +        E++    +  +   
Sbjct: 220 LQGSANLEFWETYEAKDITPVLASADSRARAILASETVSSDSVAVKEEAAVSAKDSLAAA 279

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSR--------LRQLLGTTAK---MSFHKVLPNNSK 223
              E+  +    +R    L      ++              T      ++  +V     +
Sbjct: 280 LKGEAPAEAGEQNRKNYPLLSVLQLNQSGVGAIVGYADYKDTADINRILNMKEVKEVLPR 339

Query: 224 KGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNGATANFDPKTHKPVVDIS 273
              +       D D    + E           +  + G  +  A  ++D    +P V ++
Sbjct: 340 DLKLMWGVRASDMDKTGRIFELYAIKSTQRNGRAPLEGDVITDARDSYDQYN-RPCVTMA 398

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
            +  GARR+ ++T+ N G+ +A+VLDG V +AP  N  I  G ++I+G+FT E    LA 
Sbjct: 399 MNTEGARRWAQLTKQNTGREIAIVLDGYVYSAPRSNGEIAGGNSEITGSFTPEQTKDLAN 458

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADF 392
           +L++G +P    IV+E  VG  LG +SI +G  + +  LV+++ +M V+YG   G+VA+ 
Sbjct: 459 VLKSGKMPAPARIVQEDIVGPSLGQESINQGIVSFIVALVVLMAYMCVMYGFIPGMVANA 518

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++F+N   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE +  +    +L
Sbjct: 519 ALFINFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELKAGKGTRQAL 578

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
             G+  A+S IFDSN+T++I  ++LF FG G +RGFA T+ + IL S F+A+ + R +  
Sbjct: 579 SEGYVNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILCSFFSAVFLTRLVYE 638

Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG 572
             +   K  ++         L    +   F+ +      +     I  I   F  GL   
Sbjct: 639 HFMNKDKWMNLTFTTGISKNL-MQNVHYNFIGSTKRSFTVWGTIIIICIVSFFVRGLAQS 697

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           IDF GG    V   + V    VR  L+             G     VR+           
Sbjct: 698 IDFTGGRNFVVQFEQKVAPETVRELLQPKVGDANVQAIALGTDGRTVRVTTNYRIEEDSP 757

Query: 633 RVLEMVKKKITEIVPLST---------------------IQNTEIVGPKISRELIRKGIV 671
            +   +++ + + +                         I +++ VGP I+ ++    I 
Sbjct: 758 TIDAEIEEFLYQALKDGNLLGEGTTLEIFIDRDNRVGGSIISSQKVGPSIADDIKTSAIW 817

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVA 724
            V+++ IA+ +YI IRF    F++GA   L +D    +G ++L      F +E + T + 
Sbjct: 818 SVVLALIAIGLYILIRFSNIAFSIGATVALTVDTLLIIGAYSLCHGWMPFSLEIDQTFIG 877

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT IGYS+NDKVV++DR+R+ + LY        L + S+N TL R++ TS++  I +L
Sbjct: 878 AILTAIGYSINDKVVIFDRVREFLGLYPKR-DRVQLFNDSLNTTLCRTINTSLSTLIVLL 936

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + + GG  I SFA  M  G V+   SS+FIAAP+       +    
Sbjct: 937 SIFILGGDSIRSFAFAMILGAVIGTLSSLFIAAPVAYLTMGNKMPKG 983



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 98/257 (38%), Gaps = 40/257 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPS-----------------AM---- 39
           M+N  ++ +   ++          +F+ +  +++                     +    
Sbjct: 1   MQNKGFVKVFAVLLTLACAFYLSFSFVTRYQMNKAAEDPRGAAHYLDSMQNQKVWLGVYT 60

Query: 40  ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95
                +  I LGLDL+GG +++LEV   D V        DE  +    E      +    
Sbjct: 61  LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKTLADNKPDEAFNKAVAE-AAKQQVTSQD 119

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           + ITL   +         K+    +          K  +   +T+ E+  VL +      
Sbjct: 120 DFITLFIRE-------YKKLAPEGKLAELFATQQLKDKVTTRSTDAEVEAVLREE----- 167

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
           +  A+E S  ++R RID+ G+++  IQ       RI+++LPG ++P R+R+LL  +A + 
Sbjct: 168 VKAAVENSYNVLRTRIDRFGVAQPNIQTLEGRMGRIMVELPGIKEPERVRKLLQGSANLE 227

Query: 214 FHKVLPNNSKKGFMFGV 230
           F +          +   
Sbjct: 228 FWETYEAKDITPVLASA 244


>gi|300772654|ref|ZP_07082524.1| protein-export membrane protein SecD/SecF [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300760957|gb|EFK57783.1| protein-export membrane protein SecD/SecF [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 993

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 215/810 (26%), Positives = 374/810 (46%), Gaps = 47/810 (5%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVNS 124
           +  +Q     LR+ + K G+   +++  Q  N+I +       ++ +   +    +    
Sbjct: 176 DNAIQNSYKVLRTRIDKFGVASPNIQIQQGTNRILIELPGVNDEQRVRKLLQGSAKLEFY 235

Query: 125 KLNVDPK--KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE---- 178
           + + + +    L         ++   + +          +   ++       G S+    
Sbjct: 236 ETHSNFQVYPLLENINKTLAATLKAQKTSSADTTKADTTKKENLLANLGAGKGKSDSAAV 295

Query: 179 ---------------------STIQRLGSHRILIQLPGEQDPSRLRQLLGTTA--KMSFH 215
                                +  Q       ++ +   +D +++  LL       +   
Sbjct: 296 NAKLGEDNPLFAVLTPSVAMGANNQMQLVPGPMVGIAQLKDTAKVNALLAKPEIKSIIPA 355

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
            +    + K        L         +++   ++G  +  A  +  P+T++PVV +  +
Sbjct: 356 NLKLLWAVKPEQNSPNALSLYAIRPSGIDNGAVLTGDVITDAKNDIAPQTNQPVVSMQMN 415

Query: 276 EMGARRFFEVTRDNIGK--PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
             GAR + ++T         +A+VLD  V +AP +N+ IP+G +QISG+FT +    LA 
Sbjct: 416 NAGAREWRKITAKAAQNKEAIAIVLDNVVYSAPNVNEEIPNGSSQISGSFTTDDTKDLAN 475

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
           +L+AG LP    IVEE  VG  LG  +I  G  + +   V++++FM+  Y + G  A+ +
Sbjct: 476 VLKAGRLPTTAKIVEEAIVGPSLGQAAIDAGVNSAIIAFVVVLIFMVFYYNRAGWAANIA 535

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           + +NV   L +L+ L A LTLP IAGIVL +G AVD+N+L+ ERIREE    +S+  ++ 
Sbjct: 536 VIVNVFFLLGVLASLNAVLTLPGIAGIVLTMGTAVDANVLIYERIREELGLGKSMRQAIA 595

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            G+  A  +I DS IT  +  +VLFFFG G + GFA TM + I+ S+FTAI I R +  F
Sbjct: 596 DGYKHAMPSILDSQITTFLVGIVLFFFGSGPILGFATTMMVGIVTSLFTAIFISRLIFEF 655

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
           ++      S+     +            F++ R     +SI+ +I  +  +FT G   G+
Sbjct: 656 MLDKDMKISVSYPWSANTLR---NANFNFIKNRKKFYIVSIIAAIICLGSIFTKGFTLGV 712

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           DF+GG    V  ++ V+L  VR +L+ +       + F  E    V   Y+  ++     
Sbjct: 713 DFQGGRTYTVRFDKAVNLENVRQSLDEVFQKTTEVKTFGSENQVRVTTTYKIDETSDDAD 772

Query: 634 VLEMVKKKI---TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
              + K  +           I + + VGP I+ ++  +     I S I +  YI IRF+ 
Sbjct: 773 KEVLDKLNLGLSKIEGNKHEILSQQKVGPSIANDIKSRATYSAIFSIIIIATYILIRFRK 832

Query: 690 WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           W ++ GA    I D    LG F+L      F ++ +   VAA+LT+I YSVND VVV+DR
Sbjct: 833 WQYSAGAAIATIHDAVILLGLFSLLDGIVPFSLDIDQHFVAAILTVIAYSVNDTVVVFDR 892

Query: 744 MRKNMKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           +R+ +    + +    D+++ +IN TL R++ TS+     +  + ++GG VI  F+  + 
Sbjct: 893 LREYVNKPNSHNEKMSDIVNHAINTTLSRTIITSLTIIFVLAVLFIFGGEVIRGFSFAIL 952

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            GIVV   SSIF+AAP +      R    +
Sbjct: 953 IGIVVGTYSSIFLAAPSVYDFRKGRHMAEK 982



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/190 (24%), Positives = 82/190 (43%), Gaps = 14/190 (7%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
           N ++LGLDL+GG ++ +E+  D+ +        D    F    G  V   R     +   
Sbjct: 74  NELALGLDLKGGMNVTMEISLDELITNLANNPKD--EKFNTSLGNAVKKSRSSNKSLVDL 131

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
           F +       +  +  F              +L+  T+  +      Q   D     AI+
Sbjct: 132 FIEDYKSSGASTPLASFFA-------TQSNSSLIKATSSDKEVANFLQKEADN----AIQ 180

Query: 162 QSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
            S +++R RID+ G++   IQ    ++RILI+LPG  D  R+R+LL  +AK+ F++   N
Sbjct: 181 NSYKVLRTRIDKFGVASPNIQIQQGTNRILIELPGVNDEQRVRKLLQGSAKLEFYETHSN 240

Query: 221 NSKKGFMFGV 230
                 +  +
Sbjct: 241 FQVYPLLENI 250


>gi|326775444|ref|ZP_08234709.1| protein-export membrane protein SecD [Streptomyces cf. griseus
           XylebKG-1]
 gi|326655777|gb|EGE40623.1| protein-export membrane protein SecD [Streptomyces cf. griseus
           XylebKG-1]
          Length = 791

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 192/794 (24%), Positives = 333/794 (41%), Gaps = 74/794 (9%)

Query: 45  SLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITL 100
            LGLDL+GG+ +VL+       +          + LR  +   G+   ++ +   ++I +
Sbjct: 29  RLGLDLQGGTRIVLQARDTATVEADRETTDRTLEVLRQRIDSLGVSEPTLTRSGEDRIIV 88

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
              D +     A+ +    Q     +     +      +  + +              + 
Sbjct: 89  ELPDVQDPRQAAEVIGRTAQLTFHPVQGPAAEEPEKKPSGSDPTAEPGSPAEPGSTPDSD 148

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
             ++   + R+  +G                       PSRL       A   F      
Sbjct: 149 RLTLPDEQGRVLDLG-----------------------PSRLSGAGVEDATAGF------ 179

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                                      E  G      +  F     +    ++ +     
Sbjct: 180 ---------------------------EAQGGAGWSVSLEFRKDAGQEWKKLTGEAACHP 212

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
              +  R  I     V+   +V  +      +PSG  QI+G+F+ + A  LA +++ G+L
Sbjct: 213 AGDDRRRVAIVLDQKVISSPQVDPSVGCGAGLPSGATQITGSFSADEARDLALLIKGGAL 272

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P+ + IVE+R VG  LG+ +I     A + G     LF+ ++Y  +G +A  ++    ++
Sbjct: 273 PVPVEIVEQRTVGPTLGAAAIDASAQAALIGAAATALFITIVYRLFGALAAVALGAYGVI 332

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSR 458
           + A L  LG TLTLP +AG VL IG+AVD+N+LV ER REE   R  +S+  +L  GF +
Sbjct: 333 SYAALVALGVTLTLPGLAGFVLAIGMAVDANVLVFERAREECADRPKRSLRSALTTGFQK 392

Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           A+S + DSN T LIA  +LFF G G V+GF +T+ + ++ SMF+A+ I RA+       +
Sbjct: 393 AWSAVADSNATTLIAAGLLFFLGSGPVKGFGVTLAIGVIASMFSALVIARALTEIAANSR 452

Query: 519 KMKSID----INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
            +        I               Q  R     + +S      ++  +   G++ G++
Sbjct: 453 FVSDYRNVNGIARPGAVRTWLTRKDPQIFRKPVRWLIVSAALVAVAVAGIVVRGVDLGVE 512

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F GG  +    +RPVD+   R  L +   GD                             
Sbjct: 513 FTGGRLVEYSTSRPVDVETARDTLAAAGFGDAEVTTAGDGD-------LSVRTGKLDNDG 565

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
              ++  + E    +T    E++GP +  EL R  ++ + ++    L Y+ +RF+W FA+
Sbjct: 566 EHALRAALAEEGGETTKVRDELIGPSLGDELRRNALIALGVAVAVQLAYLAVRFRWTFAV 625

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            ++  ++ D+   +G FA  G   +   +AA+LT+IGYSVND VVV+DR+R+ +      
Sbjct: 626 SSVAAMVHDVILVVGAFAWLGRPVDGIFLAALLTVIGYSVNDSVVVFDRVRE-LWGANRR 684

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
                +  +++ +T+ R+V T M A   +  +AV GG  +  FA+ +  GIVV   SS+F
Sbjct: 685 TPLDTIARRAVLQTVPRTVNTGMGALFILAALAVLGGDSLADFALALLIGIVVGTWSSVF 744

Query: 815 IAAPILLFIYDWRA 828
            A P  L +     
Sbjct: 745 TAVPGALLLERNAK 758


>gi|294674946|ref|YP_003575562.1| protein-export membrane protein SecDF [Prevotella ruminicola 23]
 gi|294473597|gb|ADE82986.1| protein-export membrane protein SecDF [Prevotella ruminicola 23]
          Length = 1010

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 222/843 (26%), Positives = 385/843 (45%), Gaps = 74/843 (8%)

Query: 58   LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADK 114
            +E      V   +    + +R+ + K G+   ++++      +I +     +  E +   
Sbjct: 161  VEAALRTEVQSAVDNSFNVVRNRIDKFGVVQPNIQKLEGQSGRIMVEMPGIKEPERVRKL 220

Query: 115  VTLFLQGVNSKLNVD--------------PKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
            +         +                    +  +       +    +    D   +   
Sbjct: 221  LQGSANLEFWETYNSQEVTPLLAQLNQRWAAQGGVDVADTTAVDSAATAAVADSAKTATG 280

Query: 161  EQSMEIIRQRIDQIGISESTIQRLGSHRILIQ----------LPGEQDPSRLRQLLGT-- 208
            + + ++ ++        E   ++     I                 +D + + +++ +  
Sbjct: 281  DLAAKLAKKDSKDNKAVEMAKKQNPLFSIFQPTQGNTLAVVGYANARDTAEINKMIYSDL 340

Query: 209  TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE-----DKVEISGIHLNGATANFDP 263
              ++   ++          FG +  +      Y ++      +  + G  + GA  +FD 
Sbjct: 341  AGRIFPAELKLRWGATPEDFGGQNTKGDIFELYALKVTEPSGRAPLEGDVITGAKDDFDQ 400

Query: 264  KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              H P V +  +  GARR+ ++T+ NIGK +A+VLD  V +AP I   I  G +QI+GNF
Sbjct: 401  MGH-PSVSMQMNSDGARRWSQITKQNIGKAVAIVLDDAVYSAPRILTQIDGGNSQITGNF 459

Query: 324  TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            TIE    LA  L +G +P    IV+E  VG  LG+ SI +G  + V   VL++++MI+LY
Sbjct: 460  TIEATKDLANTLNSGKMPAPTRIVQEEVVGPSLGAQSIQQGIISFVVAFVLLMIYMIMLY 519

Query: 384  GK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
            G   GL++D ++  N+  TL +L+   A LT+P IAGIVL +G AVD+N+L+ ERI+EE 
Sbjct: 520  GFVPGLLSDIALLFNLFFTLGILTSFQAALTMPGIAGIVLTLGTAVDANVLIYERIKEEL 579

Query: 443  RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
            +K   V  +L+ G+S A+S IFDSN T+LI  ++L +FG G V+GFA T  + I+IS FT
Sbjct: 580  KKGLGVKEALNKGYSNAFSAIFDSNFTSLITGIILLYFGTGPVKGFATTWIIGIVISFFT 639

Query: 503  AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
            A+ + R +   ++   K  ++         L        FM A      +    ++  I 
Sbjct: 640  AVYLTRVVYDAMLSKDKWTNLTFVTGYSKNL-MQNAKYNFMGAYKKTYALWAAVAVVCIG 698

Query: 563  LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK------- 615
              F  GL+  IDF GG    V  ++   +  VR  +    I  I  +             
Sbjct: 699  SFFVRGLSQSIDFTGGRNYVVTLDKQTPVEEVRKAMAGAFINTIGEKANQEANTSVIALG 758

Query: 616  ----------NFLVRLQYQPGDSVAQTRVLEMVKKK------------ITEIVPLSTIQN 653
                      N+ +       D  A+  +   +KK               ++    +I +
Sbjct: 759  TDGKTVRISTNWDIESNNPEVDDKAENILFAALKKAGLVSQENVEAFKNPDVREGGSIIS 818

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
            +  VGP +++++    I+ V I+ IA+ +YI +RF+   F++GA+  L LD    +G ++
Sbjct: 819  SAKVGPSVAKDITHGAIISVCIALIAIFLYILLRFRNLAFSVGAVVALALDALLVIGVYS 878

Query: 713  L------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L        +E +   + A+LT+IGYS+NDKVVV+DR+R+N+ LY      + L + S+N
Sbjct: 879  LCWGWVPMSLEIDQVFIGAILTVIGYSINDKVVVFDRIRENLGLYGKR-DRQQLFNDSLN 937

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +TL R++ TS+   I +L + + GG  I SF++ M  G+V    SS+FIAAP        
Sbjct: 938  QTLARTINTSVTTLIVLLAIFILGGDSIRSFSLAMILGVVFGTLSSLFIAAPTAFLWMGR 997

Query: 827  RAK 829
              K
Sbjct: 998  TIK 1000



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 94/266 (35%), Gaps = 41/266 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N   +  +  ++  +       +F+ +    +  +                       
Sbjct: 1   MQNKGIVKFIAVLLILVCCFYLSFSFVTRHYESKAAAMGEEAGAEYLDSINNEKVYMGIY 60

Query: 40  -----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI 94
                 +  I LGLDL+GG +++LEV   D V+      +D       +           
Sbjct: 61  SLKQCREMEIGLGLDLKGGMNVILEVSVPDVVDVLADHKTDAAYKKAMELAKKEEE-TSQ 119

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
            + I+L     +             +G    L        +        +    +  +  
Sbjct: 120 NDFISLFVKYWKQ------------EGNGRPLAAIFATQQMKGKVSTSSTDSQVEAALRT 167

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
            +  A++ S  ++R RID+ G+ +  IQ+    S RI++++PG ++P R+R+LL  +A +
Sbjct: 168 EVQSAVDNSFNVVRNRIDKFGVVQPNIQKLEGQSGRIMVEMPGIKEPERVRKLLQGSANL 227

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDG 238
            F +   +      +  +     + G
Sbjct: 228 EFWETYNSQEVTPLLAQLNQRWAAQG 253


>gi|150024627|ref|YP_001295453.1| bifunctional preprotein translocase subunit SecD/SecF
           [Flavobacterium psychrophilum JIP02/86]
 gi|149771168|emb|CAL42635.1| Preprotein translocase SecD and SecF subunits [Flavobacterium
           psychrophilum JIP02/86]
          Length = 994

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 179/810 (22%), Positives = 342/810 (42%), Gaps = 50/810 (6%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123
           V   ++     LR  + K G+   ++ ++    +I +    ++  +     ++   Q   
Sbjct: 177 VEESIESAFRVLRERIDKFGVTQPNIVKLGTSGRILVELPGAKDVDRAKKLLSSTAQLEF 236

Query: 124 SKLNV---------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS--MEIIRQRID 172
            +               + L  T                ++    ++++       ++ D
Sbjct: 237 WETLKVDEIGSYLGSVNEALKKTEKATVAVDTAKSKTSSKIEGLLVDKTTKDSTATKKAD 296

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT---AKMSFHKVLPNNSKKGFMFG 229
                   +        ++     +D + +      +   A +  + V            
Sbjct: 297 AGPFFNKIVSGGQQGSPVLAYVKSKDTAVINAYFKRSDIKALLPSNLVDTRFVWGKPSAK 356

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              + +    +    +   +SG  L  A+ ++D      V      +          R  
Sbjct: 357 TGDVVELYALKGNRTNTPPMSGSVLLDASNSYDQTGKPSVTMQMSGKGAKIWEELTGRAY 416

Query: 290 IGKPLAVVLDGRVLTAPV--INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
             K    ++   ++ +     +  I  G+++ISG+FTI+    LA +LRAG LP    IV
Sbjct: 417 TQKSNIAIVLDNIVYSAPGVSSGPISGGRSEISGSFTIDETKDLANVLRAGKLPAAAEIV 476

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           +   VG  LG  +I  G  + + GL+L+ L+M++ YGK    A+ ++ +N++    +++ 
Sbjct: 477 QSEVVGPSLGQKAIDSGLNSSIVGLLLVSLWMLIYYGKSAWYANIALGVNLLFLFGVMAS 536

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR--AYSTIFD 465
            G  LTLP IAGIVL +G AVD+NI++ ER +EE R   S+  ++   FS   A  +I D
Sbjct: 537 FGFVLTLPGIAGIVLTMGTAVDANIIIYERAKEELRAGLSLDEAVKKSFSWTGAMRSIID 596

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +N+T ++   +L+ FG G ++GFA+T+ + I+ S+FT+I I R  +   +          
Sbjct: 597 ANVTHILTGSILYIFGTGPIKGFALTLLIGIITSLFTSIFITRIFLDRAVAKGTKLEFAN 656

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVL 584
           +               F++ +      S    I S+  +F     + G+DF GG    V 
Sbjct: 657 SWSKD---WFTGFNFDFLKIKKGTYIFSSCVIIVSLVSIFFVNGLDQGVDFVGGRTFQVK 713

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +PV+ + + + L    + + +     G ++ L             +   E+ KK    
Sbjct: 714 FEKPVEPTAIAAELSKKDVFESAEAKIFGTEDQLKITTKYKIKEEGVSVDTEVNKKLYNA 773

Query: 645 IVPLSTIQNTEIV------------------GPKISRELIRKGIVGVIISAIAMLIYIWI 686
           + P  +   T                      P IS ++       V+ + + + +Y+ +
Sbjct: 774 LKPHFSSSMTYEKFINSYEGKEFGVLQASKISPAISADIKTNSFWAVLGAMLVVGLYLVL 833

Query: 687 RFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVV 739
            F+   ++LGAI  ++ D+   LG ++L      F +E +   +AA+LT+IGYS+ND V+
Sbjct: 834 SFRKLGYSLGAIAAVLHDVVFVLGIYSLCYKFMPFHMEMDQHFIAAILTVIGYSMNDTVI 893

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           V+DR+R+ +       +F  +++ SIN TL R++ TS+   + +L M ++GG  I  F  
Sbjct: 894 VFDRIREFLAGNRKG-NFNQIVNDSINTTLSRTINTSLTMLLVLLIMFIFGGESIRGFIF 952

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            M  GI V   SS+FIA P+L+     + K
Sbjct: 953 AMLVGIAVGTYSSLFIATPVLVDTMSAKDK 982



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/198 (21%), Positives = 92/198 (46%), Gaps = 20/198 (10%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
           N       +     +   +I+ GLDL GG +++L++   D +       ++ +  F+K  
Sbjct: 57  NVFNLGFTNFTYDEVKTKQINKGLDLEGGINVILQISVKDVLKQLANNSTNPV--FVKSL 114

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                + +  Q  +  +F D+    +    +            +            +EI 
Sbjct: 115 ADAKNNQKGNQTYLN-AFYDAFDANSNGTTL------------LSSPDIFGNRNLAEEIK 161

Query: 145 IVLSQNNIDQVISHAIEQSME----IIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDP 199
           + +S ++  ++I+  +E+S+E    ++R+RID+ G+++  I +   S RIL++LPG +D 
Sbjct: 162 MQMSDSDAKKIINKKVEESIESAFRVLRERIDKFGVTQPNIVKLGTSGRILVELPGAKDV 221

Query: 200 SRLRQLLGTTAKMSFHKV 217
            R ++LL +TA++ F + 
Sbjct: 222 DRAKKLLSSTAQLEFWET 239


>gi|329956606|ref|ZP_08297179.1| export membrane protein SecD [Bacteroides clarus YIT 12056]
 gi|328523978|gb|EGF51054.1| export membrane protein SecD [Bacteroides clarus YIT 12056]
          Length = 996

 Score =  339 bits (868), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 210/823 (25%), Positives = 378/823 (45%), Gaps = 60/823 (7%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ +++   +I +     +  E +   +     
Sbjct: 170 EEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS----------------- 163
               +          + +T+ ++  +L+     + ++ ++                    
Sbjct: 230 LEFWETYNAKDVAPYLQSTDAKLRAILATTEDAEEVTDSVAAEAPAVAQATSTADSLAAA 289

Query: 164 -----------MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
                      +E I++    + + +      G            D ++   +    A+M
Sbjct: 290 LKGESKAQAADLEQIKKEHPLLAVLQVNPSGQGPVVGYANYKDTADINKYLSMPEVQAEM 349

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
                L                +    +             +     +      KP V +
Sbjct: 350 PKDLRLKWGVSPYEYDPKAQTFELYAIKSTERSGRAPLEGDVVVNAKDEYDHYGKPAVSM 409

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
           S +  GARR+ ++T+ N+GK +A+VLDG V +AP +NQ I  G +QI+G+FT E A  LA
Sbjct: 410 SMNTDGARRWAQLTKQNVGKAIAIVLDGYVYSAPNVNQEITGGNSQITGHFTPEQAKDLA 469

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVAD 391
            +L++G +P   +IV+E  VG  LG  SI  G  + V  L+L++++M  +YG   G+VA+
Sbjct: 470 NVLKSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCTMYGLIPGMVAN 529

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ LN+  TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  + V  +
Sbjct: 530 GALVLNMFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKGVKKA 589

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           L  G++ A+S IFDSN+T++I  ++LF FG G +RGFA T+ + ILIS FTA+ + R   
Sbjct: 590 LADGYANAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTAVFMTRLFY 649

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
              +   K+ ++  +      L    +   FM      + ++ +  +  I  L   GL+ 
Sbjct: 650 EHFMSKDKLLNLTFSTGISKNL-MANVHFDFMGRNKLWMTLTGIGVVVCIAFLSMRGLSQ 708

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            IDF GG    V     V+   VR  + S            G     VR+          
Sbjct: 709 SIDFTGGRNFKVQFENKVEPEQVRELIASKFGDANVSVIAIGADGKTVRISTNYRIEEEG 768

Query: 632 TRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             +   ++  +                    E     +I +++ VGP I+ ++    I  
Sbjct: 769 NNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADDIKVSAIWS 828

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725
           V+++ IA+ +YI +RF+   +++G++  L  D    LG +++      F +E + T + A
Sbjct: 829 VVLALIAIGLYILLRFRNIAYSIGSVCALACDTIIILGAYSMFWGILPFSLEIDQTFIGA 888

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +LT IGYS+NDKVV++DR+R+   LY    + + L + S+N TL R++ TS++  I +L 
Sbjct: 889 ILTAIGYSINDKVVIFDRVREFFGLYPKR-NKKVLFNDSLNTTLARTINTSLSTLIVLLC 947

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + + GG  I SFA  M  G+V    SS+F+A+PI   +   + 
Sbjct: 948 IFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYMLMKNKK 990



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 83/184 (45%), Gaps = 7/184 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I   +IVGP + +  I  GI+  +++ I +++Y+   +     + A   L+L++  TLG
Sbjct: 482 HIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCTMYGLIPGMVANGALVLNMFFTLG 541

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             + F     ++ +A ++  +G +V+  V++Y+R ++ ++        +  +        
Sbjct: 542 ILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKGVKKALADGYANAF 598

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +++ + I+ + +  +G   I  FA  +  GI++    S F A  +    Y+    
Sbjct: 599 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYEHFMS 654

Query: 830 NARI 833
             ++
Sbjct: 655 KDKL 658



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 94/261 (36%), Gaps = 44/261 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWF 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +       SDE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKSDEAFNQ--ALATAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ +   F     K      ++                  L     ++ S    +  
Sbjct: 119 TTSQDDVITLFIREYHKIAPGASLSQLFAT-----------QQLKDKVNQKSSDAEVEKV 167

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
           + + +  A++ S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 168 LREEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGV 230
           A + F +         ++   
Sbjct: 228 ANLEFWETYNAKDVAPYLQST 248


>gi|153805802|ref|ZP_01958470.1| hypothetical protein BACCAC_00039 [Bacteroides caccae ATCC 43185]
 gi|149130479|gb|EDM21685.1| hypothetical protein BACCAC_00039 [Bacteroides caccae ATCC 43185]
          Length = 1007

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 221/832 (26%), Positives = 378/832 (45%), Gaps = 70/832 (8%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   ++   + LR+ + + G+   +++ +++   +I +     +  E +   +     
Sbjct: 170 EEVKAAVENSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNN----------------------------- 151
               +     +    + + + ++  VL+Q                               
Sbjct: 230 LEFWETYTAKEILPAMQSADAKLRAVLTQETTTDSVTTDTTKAAVLTEATPTKKAVSAAD 289

Query: 152 -------IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
                   D     A   +ME I+++   + I +      G            D ++   
Sbjct: 290 SLAAALKGDAKQDDATAANMEEIKKQYPLLSILQLNSSGQGPVIGYANYKDTADINKYLA 349

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDP 263
           +    A++     L                +    +      K  + G  +  A   FD 
Sbjct: 350 MPEIKAELPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFDQ 409

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
            +    V +S +  GARR+ ++T+ NIG+ +A+VLD  V +AP +N  I  G++QI+G+F
Sbjct: 410 YSKPA-VSMSMNSDGARRWAQLTKQNIGRAIAIVLDNYVYSAPNVNTEITGGRSQITGHF 468

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T E A  LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M  +Y
Sbjct: 469 TPEQAKDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMY 528

Query: 384 GK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           G   G+VA+ ++ LN   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE 
Sbjct: 529 GIIPGMVANGALILNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEEL 588

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R  + V  +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + IL+S FT
Sbjct: 589 RAGKGVKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFFT 648

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A+ + R +    +   K   +         L        FM      + I     I  I 
Sbjct: 649 AVFMTRLVYEHFMSKDKWLGLTFTTKISKNL-MTNTRFDFMGTNKKSLIIVSAVIIVCIS 707

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                GL+  IDF GG    V    PV+   VR  + S            G     VR+ 
Sbjct: 708 SFAIRGLSQSIDFTGGRNFKVQFENPVEPEQVRELIASKFGDANVSVIAIGTDKKTVRIS 767

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISR 663
                  A   V   ++  + E +     Q                   +++ VGP I+ 
Sbjct: 768 TNYRIEDAGNNVDSEIESYLYETLKPVLTQNISLETFIDRDNHTGGSIVSSQKVGPSIAD 827

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGI 716
           ++    I  V+++ +A+ +YI +RF+   +++G+I  L  D    +G ++L      F +
Sbjct: 828 DIKTGAIYSVVLALLAIGLYILLRFRNIAYSIGSIVALSCDTIMIIGAYSLFWGILPFSL 887

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           E + T + A+LT IGYS+NDKVV++DR+R+   LY      R L + S+N TL R++ TS
Sbjct: 888 EIDQTFIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRQLFNDSLNTTLARTINTS 946

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++  I +L + + GG  I SFA  M  G+V+   SS+FIA+PI   +   + 
Sbjct: 947 LSTLIVLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 998



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 92/249 (36%), Gaps = 44/249 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYNNKAKEIANGDMKVEQDYLDSLSNEKVWL 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALATAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ +   F     +     K++                  L     ++ +    +  
Sbjct: 119 INSQDDVITLFVKEYHRIAPDAKLSELFAT-----------QQLKDKVSQKSTDAEVEKV 167

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
           + + +  A+E S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 168 LREEVKAAVENSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVL 218
           A + F +  
Sbjct: 228 ANLEFWETY 236


>gi|288800478|ref|ZP_06405936.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332691|gb|EFC71171.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella sp. oral taxon 299 str. F0039]
          Length = 995

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 211/826 (25%), Positives = 379/826 (45%), Gaps = 59/826 (7%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + +R+ + K G+   ++++    + +I +     R  E +   +     
Sbjct: 164 EEVKNAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIREPERVRKLLQGSAN 223

Query: 121 GVNSKLNVDPK-----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI---- 171
               +     +       L       E +   +       ++ A E  +E+   +     
Sbjct: 224 LEFWETFNSDEIVPYLVQLDQRLANGETTADTTAVADTAKVAKAAEPKLELNTNKKANAK 283

Query: 172 ----DQIGISESTIQRLGSHRILIQLP---------GEQDPSRLRQLLGTTAKMSFHKVL 218
               D+  I+E+         +                +D + + + + +          
Sbjct: 284 LNVNDEAKIAEAKRAHPLLSMLQTTGNGALALVGFASVRDTAEINKAIYSATAKQVLPSD 343

Query: 219 PNNSKKGFMFGVRFLRDSDGNQY----LVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
                          ++  G           +  + G  +  A   F+  T  P V ++ 
Sbjct: 344 VKLMWSAKPEDGIKAKNIYGLYAIKVTTANGRAPLEGDVITDAKDQFNNLTGAPEVGMTM 403

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
           +  GARR+  +T+ N GK +A+VLDG V +AP +N  I  G++ ISG+FTIE    LA  
Sbjct: 404 NTEGARRWAALTKANTGKAIAIVLDGVVYSAPRVNGEIDGGQSSISGSFTIEDTKDLANT 463

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFS 393
           L++G +P    IV+E  VG  LG+ SI +G  +     V+++++M+V+YG   G++A+ +
Sbjct: 464 LKSGRMPAPARIVQEEVVGPTLGAQSIQQGIVSFGIAFVILMIYMVVMYGFTPGMMANIA 523

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           + +N+  TL +L+   A LTL  IAG+VL +G AVD+N+L+ ER +EE +  +    ++ 
Sbjct: 524 LLVNLFFTLGILTSFQAALTLSGIAGMVLSLGTAVDANVLIYERTKEELKLGKDTRQAMS 583

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            G+  A+S IFDSN T++I  ++L+ FG G +RGFA T+ + I+ S FTA+ + R +   
Sbjct: 584 EGYRNAFSAIFDSNFTSIITGIILYVFGTGPIRGFATTLIIGIICSFFTAVYLTRLVFEN 643

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
            +   K  ++         L      + FM        +  +  + +I      GL+  I
Sbjct: 644 KMNKGKWLNLTFTTGISRNL-MTNTHVGFMSFYKKTFSVVGVIILAAIVSFAVRGLSRSI 702

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           DF GG    +   RPV+   +R  + +   G  +     G  +  +R+            
Sbjct: 703 DFTGGRNYVITFERPVEPEQIRGIIANAFPGTTTGALALGTDHKTIRISTNYKIESNSPT 762

Query: 634 VLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           V +  +  +                     +I    +I ++  VGP +++++    I+ V
Sbjct: 763 VDDEAETILYKALKKAGFVSQPNVESFKNPDIREGGSIISSTKVGPSVAKDITHGAILSV 822

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAV 726
           +++  A+ IYI IRF+   F++G+   L +D    LG ++L      F +E + T + A+
Sbjct: 823 VLALFAIFIYILIRFRNMAFSIGSTVALAVDTIIVLGVYSLCWGWMPFSLEIDQTFIGAI 882

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           LT+IGYS+NDKVVV+DR+R+NM+L+     F+ L + SIN+TL R++ TS +  I +L +
Sbjct: 883 LTVIGYSINDKVVVFDRIRENMQLHQK-QDFKTLFNDSINQTLTRTINTSTSTLIVLLCI 941

Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              GG  I SF+  M+ G++V   SSIF+AAPI       +    R
Sbjct: 942 FFLGGESIRSFSFAMSLGVIVGTLSSIFVAAPIAFLTLGKQKGKRR 987



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/273 (15%), Positives = 96/273 (35%), Gaps = 38/273 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPKN--------------- 42
           M+N   +++   ++    +     +F      S  +     + +                
Sbjct: 1   MQNKGIVIVTAVLLTLASIFYLSFSFATRYYDSKAEAIKDPIAQQDYKDSVKYLGIYSYQ 60

Query: 43  -----RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG +++LE+   D +       +D        E           + 
Sbjct: 61  KCLETQIGLGLDLKGGMNVILEISVPDVLETLADHKTDAFF-VKAMEEAKKEEETSQGDF 119

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I+L               +        +L        L        S    +  + + + 
Sbjct: 120 ISLFVK------------SFKKNASGHRLAEIFATQQLQGKISPNSSDSEVEKVLREEVK 167

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
           +AI+ S  ++R RID+ G+ +  IQ+      RI++++PG ++P R+R+LL  +A + F 
Sbjct: 168 NAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGIREPERVRKLLQGSANLEFW 227

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           +   ++    ++  +     +           +
Sbjct: 228 ETFNSDEIVPYLVQLDQRLANGETTADTTAVAD 260


>gi|218131487|ref|ZP_03460291.1| hypothetical protein BACEGG_03105 [Bacteroides eggerthii DSM 20697]
 gi|317476447|ref|ZP_07935696.1| protein-export membrane protein SecD [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986419|gb|EEC52756.1| hypothetical protein BACEGG_03105 [Bacteroides eggerthii DSM 20697]
 gi|316907473|gb|EFV29178.1| protein-export membrane protein SecD [Bacteroides eggerthii
           1_2_48FAA]
          Length = 1000

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 214/824 (25%), Positives = 378/824 (45%), Gaps = 62/824 (7%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ +++   +I +     +  E +   +     
Sbjct: 170 EEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229

Query: 121 GVNSK---------------------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
               +                     L           +T  E   V    +    ++ A
Sbjct: 230 LEFWETYNAKDVASYLQSADAKLRAILATTEDSTEATDSTAAETPAVAQATSTADSLAAA 289

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHR----ILIQLPGEQDPSRLRQLLGTTAKMSFH 215
           ++   +     ++QI      +  L  +      ++     +D + + + L      +  
Sbjct: 290 LKGESQAQAANLEQIKKEHPLLAVLQVNPSGQGPVVGYANYKDTADINKYLSMPEVQAEM 349

Query: 216 KVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                       +       +             +  + G  +  A   F     KP V 
Sbjct: 350 PKDLRLKWGVSPYEYDPKAQTFELYAIKSTERNGRAPLEGDVVVNAKDEF-DHYGKPAVS 408

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +S +  GARR+ ++T+ N+GK +A+VLDG V +AP +NQ I  G +QI+G+FT E A  L
Sbjct: 409 MSMNTDGARRWAQLTKQNVGKAIAIVLDGYVYSAPNVNQEITGGNSQITGHFTPEQAKDL 468

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVA 390
           A +L++G +P   +IV+E  VG  LG  SI  G  + V  L+L++++M  +YG   G+VA
Sbjct: 469 ANVLKSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCSMYGFIPGMVA 528

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
           + ++ LN+  TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  + V  
Sbjct: 529 NGALVLNMFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKGVKK 588

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +L  G++ A+S IFDSN+T++I  ++LF FG G +RGFA T+ + ILIS FTA+ + R  
Sbjct: 589 ALADGYANAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTAVFMTRLF 648

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
               +   K+ ++  +      L    +   FM      + ++ +  +  I  L   GL+
Sbjct: 649 YEHFMSKDKLLNLTFSTGISKNL-MANVHFDFMGRNKLWMTLTGIGVVVCIAFLSMRGLS 707

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
             IDF GG    V     V+   VR  + S            G     VR+         
Sbjct: 708 QSIDFTGGRNFKVQFENKVEPEQVRELIASKFGDANVSVIAIGADGKTVRISTNYRIEEE 767

Query: 631 QTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
              +   ++  +                    E     +I +++ VGP I+ ++    I 
Sbjct: 768 GNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADDIKVSAIW 827

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVA 724
            V+++ IA+ +YI +RF+   +++G++  L  D    LG +++      F +E + T + 
Sbjct: 828 SVVLALIAIGLYILLRFRNIAYSIGSVCALACDTIIILGAYSMFWGVLPFSLEIDQTFIG 887

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT IGYS+NDKVV++DR+R+   LY    + + L + S+N TL R++ TS++  I +L
Sbjct: 888 AILTAIGYSINDKVVIFDRVREFFSLYPKR-NKKVLFNDSLNTTLARTINTSLSTLIVLL 946

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + + GG  I SFA  M  G+V    SS+F+A+PI   +     
Sbjct: 947 CIFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYMLMKHSK 990



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/184 (18%), Positives = 84/184 (45%), Gaps = 7/184 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I   +IVGP + +  I  GI+  +++ I +++Y+   + +   + A   L+L++  TLG
Sbjct: 482 HIVQEDIVGPSLGQASINAGIMSFVVALILLMVYMCSMYGFIPGMVANGALVLNMFFTLG 541

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             + F     ++ +A ++  +G +V+  V++Y+R ++ ++        +  +        
Sbjct: 542 ILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKGVKKALADGYANAF 598

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +++ + I+ + +  +G   I  FA  +  GI++    S F A  +    Y+    
Sbjct: 599 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYEHFMS 654

Query: 830 NARI 833
             ++
Sbjct: 655 KDKL 658



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 97/261 (37%), Gaps = 44/261 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYTNKAKEFAKGDVKVEQDYLDSLSNEKVWF 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +       SDE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKSDETFNQ--ALATAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ +   F        I +   L      S+L    +    V     +  +   +  
Sbjct: 119 TTSQDDVITLF--------IREYHKLAPDASLSQLFATQQLKDKVNQKSSDAEV---EKV 167

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
           + + +  A++ S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 168 LREEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGV 230
           A + F +         ++   
Sbjct: 228 ANLEFWETYNAKDVASYLQSA 248


>gi|237717226|ref|ZP_04547707.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. D1]
 gi|262405993|ref|ZP_06082543.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647968|ref|ZP_06725519.1| protein-export membrane protein SecD [Bacteroides ovatus SD CC 2a]
 gi|294806917|ref|ZP_06765742.1| protein-export membrane protein SecD [Bacteroides xylanisolvens SD
           CC 1b]
 gi|298480083|ref|ZP_06998282.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Bacteroides sp. D22]
 gi|229443209|gb|EEO49000.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. D1]
 gi|262356868|gb|EEZ05958.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292636684|gb|EFF55151.1| protein-export membrane protein SecD [Bacteroides ovatus SD CC 2a]
 gi|294445946|gb|EFG14588.1| protein-export membrane protein SecD [Bacteroides xylanisolvens SD
           CC 1b]
 gi|295085560|emb|CBK67083.1| protein translocase subunit secF/protein translocase subunit secD
           [Bacteroides xylanisolvens XB1A]
 gi|298273892|gb|EFI15454.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Bacteroides sp. D22]
          Length = 1003

 Score =  338 bits (867), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 215/827 (25%), Positives = 377/827 (45%), Gaps = 67/827 (8%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGV 122
           V   ++   + LR+ + + G+   +++ +++   +I +     +  E +   +       
Sbjct: 172 VKAAVENSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSANLE 231

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS------------------------- 157
             +     +    + + + ++ ++L++       +                         
Sbjct: 232 FWETYTAREVLPAMQSADAKLRVILAEGTTADTDTIEAVLTEATPVEKKTVSAADSLAAA 291

Query: 158 -----HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT--- 209
                 A ++S   + +   Q  +             +I     +D + + + L      
Sbjct: 292 LKGDVTAEDKSAANMEEIKKQYPLLSILQLNSSGQGPVIGYANYKDTADINKYLAMPEIK 351

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKP 268
           A +     L                +    +      K  + G  +  A   FD  +   
Sbjct: 352 ADLPKDLRLKWGVSPSEFDKKGQTFELYAIKSTERNGKAPLEGDVVTDAKDEFDQYSKPA 411

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
            V ++ +  GARR+ ++T+ NIG+ +A+VLD  V +AP +N  I  G++QI+G+FT E A
Sbjct: 412 -VSMTMNSDGARRWAQLTKQNIGRSIAIVLDNYVYSAPNVNSEITGGRSQITGHFTPEQA 470

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WG 387
             LA +L++G +P   +IV+E  VG  LG +SI  G  + V  L+L++++M  +YG   G
Sbjct: 471 KDLANVLKSGKMPAPAHIVQEDIVGPSLGQESINAGIFSFVVALILLMIYMCSMYGFIPG 530

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           +VA+ ++ LN   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  + 
Sbjct: 531 MVANCALILNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKG 590

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           V  +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + IL+S FTA+ I 
Sbjct: 591 VKKALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILVSFFTAVFIT 650

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
           R +    +   K  ++         L        FM      + I     +  I      
Sbjct: 651 RIVYEHFMNKDKWLNLTFTTKISKNL-MTNTHFDFMGTNKKSLIIVSAIIVVCIGSFAIR 709

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
           GL+  IDF GG    V    PV+   VR  + S            G     VR+      
Sbjct: 710 GLSQSIDFTGGRNFKVQFENPVEPEQVRELISSKFGDANVSVIAIGTDKKTVRISTNYRI 769

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQ-------------------NTEIVGPKISRELIRK 668
                 V   ++  + E +     Q                   +++ VGP I+ ++   
Sbjct: 770 EDEGNNVDSEIESYLYETLKPVLTQNITLETFIDRDNHTGGSIVSSQKVGPSIADDIKTG 829

Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF------GIEFNLT 721
            I  V+++ +A+ +YI +RF+   +++G+I  L  D    +G ++LF       +E + T
Sbjct: 830 AIYSVVLALLAIGLYILLRFRNIAYSIGSIVALSCDTIMIIGAYSLFWGILPFSLEIDQT 889

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            + A+LT IGYS+NDKVV++DR+R+   LY      R L + S+N TL R++ TS++  I
Sbjct: 890 FIGAILTAIGYSINDKVVIFDRVREFFGLYPKR-DKRVLFNDSLNTTLARTINTSLSTLI 948

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +L + + GG  I SFA  M  G+V+   SS+FIA+PI   +   + 
Sbjct: 949 VLLCIFILGGDSIRSFAFAMILGVVIGTLSSLFIASPIAYNMMKNKK 995



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/249 (19%), Positives = 94/249 (37%), Gaps = 44/249 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--------------------- 39
           M+N  ++ +   ++  + +     +F+ +   ++                          
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRHYTNKAKEIANGDPKVEQDYLDSLSNEKVML 60

Query: 40  --------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                    +  ISLGLDL+GG +++LEV   D +        DE  +            
Sbjct: 61  WNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKPDEAFN--NALATAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ +   F     K     K++              K  +   +++ E+  VL    
Sbjct: 119 VNSQDDVITLFIREYHKIAPDAKLSELFAT------QQLKDKVNQKSSDAEVEKVLRAE- 171

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
               +  A+E S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 172 ----VKAAVENSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVL 218
           A + F +  
Sbjct: 228 ANLEFWETY 236


>gi|260910489|ref|ZP_05917157.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260635331|gb|EEX53353.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 955

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 213/835 (25%), Positives = 373/835 (44%), Gaps = 69/835 (8%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122
           V   +    + +R+ + K G+   ++++    + +I +     R  E +   +       
Sbjct: 118 VQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERVRKLLQGSANLE 177

Query: 123 NSKLNVDPKKNL-----------------------LVTTTEKEISIVLSQNNIDQVISHA 159
             +     +                          +    + E  +  ++N   +   +A
Sbjct: 178 FWETFNAAEVVPYLTQLDARLANDQNGTDTAAVDTINAKAKAEQEVAKAKNEQPKFKLNA 237

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA---KMSFHK 216
            E +   + +R +   ++ +        R+               +  T A    +    
Sbjct: 238 GEDNKPEMAERANDAQMAAAIKAHPLLARLQTVGGNALSTVGYASVRDTAAINKLIYGAL 297

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNGATANFDPKTH 266
                     +       D    + + E           +  + G  +  A   FD    
Sbjct: 298 AKQILPSDLKLLWSAKPSDQVRVKNIYELHALKVTSTNGRAPLEGDVVTDANDEFDHNNG 357

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
            PVV++  +  GARR+  +T+ N+GK +A+VLD  V +AP +   I  G + ISGNFTIE
Sbjct: 358 APVVNMRMNSDGARRWAALTKANVGKAIAIVLDNVVYSAPRVTNEIDGGSSVISGNFTIE 417

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK- 385
               LA  L++G +P    IV+E  VG  LG+ SI +G  +     V+++ +MI++YG  
Sbjct: 418 ETKDLANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIQSFAIAFVVLMAYMILMYGFT 477

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++A+ ++ +N+  TL +L+   A LTL  IAG+VL +G AVD+N+L+ ER +EE    
Sbjct: 478 PGMMANMALIVNLFFTLGILTSFQAALTLSGIAGMVLSLGTAVDANVLIYERTKEELAAG 537

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           + +  +L  G+  A+S IFDSN+T++I  ++L+ FG G +RGFA T+ + I+ S FTA+ 
Sbjct: 538 KGLKQALKEGYGNAFSAIFDSNLTSIITGIILYSFGTGPIRGFATTLIIGIVCSFFTAVF 597

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           + R +  + +   +   +              +   FM        +  +     I    
Sbjct: 598 LTRLVYEYQLNKDRWTKLTFTTAFSKNF-MQNVRFPFMSVYKKTFVLVAVLLAVFIGSFV 656

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
           T GL+  IDF GG    V   + V    VR+ L +   G  +     G  +  +R+    
Sbjct: 657 TRGLSQSIDFTGGRNYVVTFEKQVQPEQVRTILANAFPGCTTGALALGTDHKTIRISTNY 716

Query: 626 GDSVAQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISREL 665
                   V +  +  +                     +I    +I ++  VGP +++++
Sbjct: 717 KIESNSPTVDDEAETILYNALKKAGLVSQKNVEAFKNPDIRQGGSIISSTKVGPSVAKDI 776

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718
               I+ V+++  A+ +YI IRF+   F++G+   L +D T  +G ++L      F +E 
Sbjct: 777 TYGAIISVLLAIFAIFVYILIRFRNVAFSVGSTVALAIDTTFVIGLYSLLWGFMPFSLEI 836

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           + T + A+LT+IGYS+NDKVVV+DR+R+NMKL+     F  L + SIN+TL R++ TS +
Sbjct: 837 DQTFIGAILTVIGYSINDKVVVFDRIRENMKLHPK-QDFHSLFNDSINQTLARTINTSFS 895

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             I +L +   GG  I SFA  M+ G++    SSIFIAAPI         K   +
Sbjct: 896 TLIVLLCILFLGGESIQSFAFAMSLGVIFGTLSSIFIAAPIAFLTLGKTNKGRAL 950



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 82/202 (40%), Gaps = 17/202 (8%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR-SFLKKEGIGVFSMRQIQNKIT 99
           + +I LGLDL+GG +++LE+   D +       +D      L++      + +     + 
Sbjct: 16  ETQIGLGLDLKGGMNVILEISVPDVIETLADHKTDVAFTKSLEQAKKEEETSQSDFISLF 75

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           + +                      KL        L      + S    +  +   +  A
Sbjct: 76  IKYY--------------KQNAPGHKLAELFATQQLQGKVSPQSSDSEVEKALRAEVQAA 121

Query: 160 IEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           I+ S  ++R RID+ G+ +  IQ+      RI++++PG ++P R+R+LL  +A + F + 
Sbjct: 122 IDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERVRKLLQGSANLEFWET 181

Query: 218 LPNNSKKGFMFGVRFLRDSDGN 239
                   ++  +     +D N
Sbjct: 182 FNAAEVVPYLTQLDARLANDQN 203


>gi|150010185|ref|YP_001304928.1| bifunctional preprotein translocase subunit SecD/SecF
           [Parabacteroides distasonis ATCC 8503]
 gi|149938609|gb|ABR45306.1| protein-export membrane protein SecD/SecF [Parabacteroides
           distasonis ATCC 8503]
          Length = 999

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 213/826 (25%), Positives = 382/826 (46%), Gaps = 63/826 (7%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113
                 +   LQ   D     LR+ + + G+   ++++     +I +     +  E +  
Sbjct: 161 AQVVSVLKQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRK 220

Query: 114 KVTLFLQGVNSK---LN---------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
            +         +   L           +    +L   T  +     +   I       + 
Sbjct: 221 LLQGSANLEFWETYKLPEIYQQLVAADNVLATILSKETSADSVATDNVEKIADAADANVS 280

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--------------------GEQDPSR 201
           ++  ++ +       +E+        +                            +D  +
Sbjct: 281 EADSLLAELGQDKKDTEANQSMEEFAKQHPLFALLQISQYNGQLSPGSTVGIAQAKDMEK 340

Query: 202 LRQLLG--TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           + + L      ++    +      K      +F           +    + G  +  A A
Sbjct: 341 ISEYLNMKQVKEVLPRNLALKWGVKAIDDKEQFFELYALKVTNRDGSPALGGDVVTDANA 400

Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
           +F  +    + +V++  +  G++ +  +T++NIG+ +A+VLD  V +AP +N  I  G++
Sbjct: 401 DFMQQAGRSEQMVNMVMNAEGSKAWARLTKENIGRQIAIVLDEMVYSAPNVNDEITGGRS 460

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G+FT E A  LA +L++G +   ++IV+E  VG  LG ++I  G  + V  LVL+++
Sbjct: 461 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINAGVISFVLALVLLMV 520

Query: 378 FMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           +M   YG   GL+AD ++ LN+  T+ +L+   A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 521 YMCAFYGLVPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 580

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           R +EE R  +S+  ++  G+S A+S IFDSN+T++I  +VLF+FG G +RGFA TM + +
Sbjct: 581 RTKEELRAGKSLGKAIADGYSNAFSAIFDSNLTSIITGIVLFYFGTGPIRGFATTMIIGL 640

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
             S  TA+ + R +   ++   K+K++         L+     I F+ AR  G  I    
Sbjct: 641 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSLTKDLL-TNPKINFLGARKVGYLIPAAI 699

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +     + T GLN GIDF GG    +  N+ V    VR+ L++   G +S         
Sbjct: 700 IVLGAISMMTIGLNNGIDFTGGRNYVIRFNQEVKTDDVRNMLDAQLDGSVSVIQIGTADQ 759

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKIT-----------EIVPLSTIQNTEIVGPKISREL 665
             V   Y+  D+          K               +    + IQ+++ VGP ++ ++
Sbjct: 760 VRVSTNYKINDNDPTVDQEIENKLFEGVKSLLPEGTTLDEFTTTFIQSSQKVGPSMADDI 819

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718
               I+ VI + I M  YI +RF+   F++GA  ++       + F+ L      F +E 
Sbjct: 820 KNSAILAVIFAMICMAAYILLRFRDVSFSVGAFASVATTTLCIISFYTLLWKVLPFSMEV 879

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           + T +AA+LT+IGYS+ND VVV+DR+R+ + LY     +  +I+ ++N TL R+  TS+ 
Sbjct: 880 DQTFIAAILTIIGYSINDTVVVFDRIRETIALYPKRDRY-QVINDALNSTLCRTFNTSLT 938

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             + VL + + GGS I SF   +  GI++   S++F+A PI   + 
Sbjct: 939 TLVVVLCIFILGGSTIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 984



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 42/247 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43
           M+N  ++ +   ++  + L     +F+ Q   S    +    P                 
Sbjct: 1   MQNKGFVKVFAVLLTLVCLFYLSFSFVTQHYNSKAAEYAGGDPAKESAYLDSLSTQKVWL 60

Query: 44  -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
                      ISLGLDL+GG ++VLE++  D +        D   +F K   +      
Sbjct: 61  GYTLKQCREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYAHQA 118

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             Q      FA+   K +   +++            + K  +   +++ ++  VL     
Sbjct: 119 TSQKDFIDLFAEEYKKLDSGARLSAIFSTF------ELKDKITPQSSDAQVVSVL----- 167

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            Q +  AI+ S  ++R RID+ G+    IQR   + RIL++LPG ++P R+R+LL  +A 
Sbjct: 168 KQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227

Query: 212 MSFHKVL 218
           + F +  
Sbjct: 228 LEFWETY 234


>gi|88803550|ref|ZP_01119075.1| putative protein-export transmembrane SecDF protein [Polaribacter
            irgensii 23-P]
 gi|88780562|gb|EAR11742.1| putative protein-export transmembrane SecDF protein [Polaribacter
            irgensii 23-P]
          Length = 1000

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 197/831 (23%), Positives = 368/831 (44%), Gaps = 65/831 (7%)

Query: 60   VDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIAD 113
            +   + +   +        + LRS + K G+    +++I N  +I +    ++  E +  
Sbjct: 176  ISVKETLQKEINSSIGTAFEVLRSRIDKFGVASPDIQRIGNSGRIQIELPGAKDIERVTT 235

Query: 114  KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR----- 168
             +T   +    ++  + +    ++    +   +L   +  +V+        +I       
Sbjct: 236  LITSKAELQFWEVYSNAEVLQYLSIANSKSIALLKDISKKEVVQEDEVIKDDIDDLLGAT 295

Query: 169  --------------------QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                                Q    IG ++ T     ++ +  +      PS LR +   
Sbjct: 296  ADSTQVDQKMLFSYLSPMQSQLSSTIGYAKVTDTATVNNLLKRKEIRSLLPSELRYVKFL 355

Query: 209  TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
                SF+   P  +             +  +     D   + G  +  A+  F       
Sbjct: 356  WDYKSFNPQSPAGTNDASQSDELVALYAIKSN--RNDVAPLEGDVILDASQVFSQLNKPE 413

Query: 269  VVDISFD--EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTI 325
            V             +          K +AVVLD  V TAP +N AI  G   ISG + TI
Sbjct: 414  VSMTMNSGASKDWAKLTSDLAAQKNKFIAVVLDDNVYTAPTVNNAITGGTTSISGGSMTI 473

Query: 326  ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
              A  +A +L+AG LP    I++   VG  LG +SI     +    ++L++L+MI+ YGK
Sbjct: 474  TEAKDIATVLKAGKLPAAARIIQIEVVGPSLGQESIDASIQSFGLAIILVLLWMILYYGK 533

Query: 386  WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             GL AD ++ +N++    +L+   A LTLP IAGI+L IG++VD+N+++ ERI+E   K 
Sbjct: 534  AGLYADIALAVNILFIFGILASFSAVLTLPGIAGIILTIGMSVDANVIIFERIKESLFKK 593

Query: 446  QSVFCSLDM--GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
            + +  S++       A S I D+NIT L+  ++L+ FG G ++GFA+T+ + I  S+FTA
Sbjct: 594  KGLKQSVEEGFSVKGALSAIIDANITTLLTGIILYVFGSGPIKGFALTLMIGIATSLFTA 653

Query: 504  ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
            + I R ++   I      + + +           I ++F+++R     IS    I  I  
Sbjct: 654  VFITRLLIDDAINKNAKLTFNTSVSKG---WFQNINVEFLKSRKIAYIISGAVIIGGIIS 710

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            +F+ GL  G+DFKGG    +  ++ ++ + V  +L+   I     + +  +K   +   Y
Sbjct: 711  IFSIGLKQGVDFKGGRSFVIRFDQDMNATQVAESLKDAFITAPEVKTYGTQKQLKITTVY 770

Query: 624  QPGDS--VAQTRVLEMVKKKITEIVPLSTI--------------QNTEIVGPKISRELIR 667
            +  D        V   +   +   +  +T                +   V P I+ ++  
Sbjct: 771  RIDDEGQQVDEEVQNALFTGLKPYLGNTTYQDFKPGFEKEGAGVMSYIKVEPTIADDIKT 830

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNL 720
              +  V  S   + +YI +RF+   F++GA+  +  D+   L  F++      F +E   
Sbjct: 831  SALYAVFGSLFIVFLYILLRFRKISFSIGAVIAVFHDVLIVLSVFSICYSFMPFDMEIGQ 890

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            + +AA+LT++GYS+ND VV++DR+R+  + +  +  + +++D++++ TLGR++ TS+   
Sbjct: 891  SFIAAILTVVGYSLNDTVVIFDRIREFTETH-KTWKYSEVVDRALSSTLGRTINTSLTTL 949

Query: 781  ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +L +  +GG  I  F   +  G+ V   SS+F+A PI+        KN 
Sbjct: 950  LVMLAIFTFGGDSIKGFMFALIIGVAVGTYSSLFVATPIMFDTSKKEEKNK 1000



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/186 (18%), Positives = 72/186 (38%), Gaps = 12/186 (6%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
           +    ++LGLDL+GG + +L+V   + +        +E  +  K       + +   +  
Sbjct: 80  VRDKEMNLGLDLKGGVNAILQVSVKEVLKNLSNDSKNEAFN--KALDTADENQKNSNSNY 137

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
                     +    +                    L        + +  +  + + I+ 
Sbjct: 138 ---------LDLFFKEFESIAGDTKLSDPSIFGTKSLSDKISFNEANISVKETLQKEINS 188

Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           +I  + E++R RID+ G++     +   S RI I+LPG +D  R+  L+ + A++ F +V
Sbjct: 189 SIGTAFEVLRSRIDKFGVASPDIQRIGNSGRIQIELPGAKDIERVTTLITSKAELQFWEV 248

Query: 218 LPNNSK 223
             N   
Sbjct: 249 YSNAEV 254


>gi|282879048|ref|ZP_06287808.1| protein-export membrane protein SecD [Prevotella buccalis ATCC 35310]
 gi|281298782|gb|EFA91191.1| protein-export membrane protein SecD [Prevotella buccalis ATCC 35310]
          Length = 1014

 Score =  338 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 215/851 (25%), Positives = 386/851 (45%), Gaps = 82/851 (9%)

Query: 60   VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112
             + +  +    Q   D     +R+ + + G+   ++++    Q +I +     R  E + 
Sbjct: 156  AEVEKALRQETQSAIDNSFNVVRTRIDQFGVVQPNIQKLEGQQGRIMVEMPGIREPERMR 215

Query: 113  DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME------I 166
              +         +     +    +T  +  ++   +Q         A  +++E      +
Sbjct: 216  KLLQGSANLEFWETFNAEEIIPYLTQIDARLANGDTQVADTTSADTAATKAVEKTSEEKV 275

Query: 167  IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK--------------- 211
            +++   +  + +   Q         Q+   +    L  +L TT +               
Sbjct: 276  VKKADPKFQLKKDKKQGDVKVSNEEQIAAAKKEHPLLAILSTTGRNALSLVGYASVRDTA 335

Query: 212  -----MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNG 256
                 +              +       D    +   E           +  + G  +  
Sbjct: 336  EVNRIIHSDLAKQILPADLKLLWSAKPADGLQVKNYYELHALKITTTTGRAPLEGDVIVD 395

Query: 257  ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316
            A+  FD  + KP V ++ +  GARR+  +T+ NIG+ +A+VLDG V T+P I   I  G+
Sbjct: 396  ASDQFDHLSGKPEVSMTMNTDGARRWSAITKANIGRAVAIVLDGLVYTSPRIQGQIDGGQ 455

Query: 317  AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
            + I+G+FTIE    LA  L++G +P    IV+E  VG  LG+ SI +G  + V   VL++
Sbjct: 456  SSITGSFTIEDTKDLANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIISFVIAFVLLM 515

Query: 377  LFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
            ++MI++Y    G++A+ ++ +NV  TL +L+   A LT+  IAG+VL +G AVD+N+L+ 
Sbjct: 516  IYMILMYNFIPGMIANCALIVNVFFTLGILTSFQAALTMSGIAGMVLTLGTAVDANVLIY 575

Query: 436  ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
            ERI+EE R  + +  ++  G+S A+S IFDSN+T+ I  V+L  FG G ++GFA T  + 
Sbjct: 576  ERIKEELRAGKGMKQAVAAGYSNAFSAIFDSNLTSAITGVILLIFGTGPIQGFATTWLIG 635

Query: 496  ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
            +  S F+A+ + R +    +   K  ++          +      +FM        I  +
Sbjct: 636  LACSFFSAVFLTRLVYEHKLNKDKWLNLKF-WTGISENMMQNTRYKFMSMFKTSGTIYAI 694

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG----------- 604
                 I      GL+  IDF GG    V  ++   +  VR+ L++               
Sbjct: 695  AIAICIGSFVVRGLSQSIDFTGGRNYVVTVDKNTHVEEVRNALDNAFQNTVGKNAGKPAT 754

Query: 605  ------DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK------------ITEIV 646
                      + F    N+ +       D  A+T +   +KK               +I 
Sbjct: 755  TTVIAIGTDGKTFRVSTNYNLESNDPQMDDQAETILYTSLKKAGLVKQSSIEAFKNPDIR 814

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
               +I ++  VGP I++++    I  V+I+ I + +YI +RF+   F++G++  LI+D  
Sbjct: 815  EGGSIISSSKVGPSIAKDITNNAIKSVVIALICIFLYILLRFRNIGFSIGSVAALIIDTM 874

Query: 706  KTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
              +G F+L      F +E + T + A+LT+IGY +ND VVV+DR+R+N+KL+      + 
Sbjct: 875  IVVGLFSLCYGWIGFSLEIDQTFIGAILTVIGYDINDSVVVFDRIRENLKLHPK-QDIQK 933

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              + SIN+TL R++ TS++  I ++P+ + G   I SFA  M  G+ V   SSIF+A+PI
Sbjct: 934  TFNDSINQTLARTINTSVSTLIVLVPIFILGADSIRSFAFAMIIGVFVGTLSSIFLASPI 993

Query: 820  LLFIYDWRAKN 830
               +   + K 
Sbjct: 994  AYLVLGRKIKK 1004



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 94/273 (34%), Gaps = 38/273 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPK---------------- 41
           M+N   +++   ++    +     +           +    + +                
Sbjct: 1   MQNKGIVIVTAVLLTLASIFYLSFSAATRYYDGQAAKLKDPIAQQEYKDSVKYLGIYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG +++LE+   D V       +D   +F+K            Q  
Sbjct: 61  RCLETQIGLGLDLKGGMNVILEISVPDVVEMLADHKTDA--AFVKSMKEARAEEETSQED 118

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               F  +  K     ++                   L      + +    +  + Q   
Sbjct: 119 FISLFIKAYKKNAPGHRLAEIFAT-----------QQLQGKVNPQSTDAEVEKALRQETQ 167

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++R RIDQ G+ +  IQ+      RI++++PG ++P R+R+LL  +A + F 
Sbjct: 168 SAIDNSFNVVRTRIDQFGVVQPNIQKLEGQQGRIMVEMPGIREPERMRKLLQGSANLEFW 227

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           +         ++  +     +   Q       +
Sbjct: 228 ETFNAEEIIPYLTQIDARLANGDTQVADTTSAD 260


>gi|262382526|ref|ZP_06075663.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 2_1_33B]
 gi|262295404|gb|EEY83335.1| protein-export membrane protein SecD/SecF [Bacteroides sp. 2_1_33B]
          Length = 999

 Score =  338 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 212/826 (25%), Positives = 381/826 (46%), Gaps = 63/826 (7%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113
                 +   LQ   D     LR+ + + G+   ++++     +I +     +  E +  
Sbjct: 161 AQVVSVLKQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRK 220

Query: 114 KVTLFLQGVNSK---LN---------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
            +         +   L           +    +L      +     +   I       + 
Sbjct: 221 LLQGSANLEFWETYKLPEIYQQLVAADNVLATILSKEASADSVATDNVEKIADAADANVS 280

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--------------------GEQDPSR 201
           ++  ++ +       +E+        +                            +D  +
Sbjct: 281 EADSLLAELGQDKKDTEANQSMEEFAKQHPLFALLQISQYNGQLSPGSTVGIAQAKDMEK 340

Query: 202 LRQLLG--TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           + + L      ++    +      K      +F           +    + G  +  A A
Sbjct: 341 ISEYLNMKQVKEVLPRNLALKWGVKAIDDKEQFFELYALKVTNRDGSPALGGDVVTDANA 400

Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
           +F  +    + +V++  +  G++ +  +T++NIG+ +A+VLD  V +AP +N  I  G++
Sbjct: 401 DFMQQAGRSEQMVNMVMNAEGSKAWARLTKENIGRQIAIVLDEMVYSAPNVNDEITGGRS 460

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G+FT E A  LA +L++G +   ++IV+E  VG  LG ++I  G  + V  LVL+++
Sbjct: 461 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINAGVISFVLALVLLMI 520

Query: 378 FMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           +M   YG   GL+AD ++ LN+  T+ +L+   A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 521 YMCAFYGLVPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 580

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           R +EE R  +S+  ++  G+S A+S IFDSN+T++I  +VLF+FG G +RGFA TM + +
Sbjct: 581 RTKEELRAGKSLGKAIADGYSNAFSAIFDSNLTSIITGIVLFYFGTGPIRGFATTMIIGL 640

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
             S  TA+ + R +   ++   K+K++         L+     I F+ AR  G  I    
Sbjct: 641 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSLTKDLL-TNPKINFLGARKVGYLIPAAI 699

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +     + T GLN GIDF GG    +  N+ V    VR+ L++   G +S         
Sbjct: 700 IVLGAISMMTIGLNNGIDFTGGRNYVIRFNQEVKTDDVRNMLDAQLDGSVSVIQIGTADQ 759

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKIT-----------EIVPLSTIQNTEIVGPKISREL 665
             V   Y+  D+          K               +    + IQ+++ VGP ++ ++
Sbjct: 760 VRVSTNYKIDDNDPTVDQEIENKLFEGVKSLLPEGTTLDEFTTTFIQSSQKVGPSMADDI 819

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718
               I+ VI + I M  YI +RF+   F++GA  ++       + F+ L      F +E 
Sbjct: 820 KNSAILAVIFAMICMAAYILLRFRDVSFSVGAFASVATTTLCIISFYTLLWKVLPFSMEV 879

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           + T +AA+LT+IGYS+ND VVV+DR+R+ + LY     +  +I+ ++N TL R+  TS+ 
Sbjct: 880 DQTFIAAILTIIGYSINDTVVVFDRIRETIALYPKRDRY-QVINDALNSTLCRTFNTSLT 938

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             + VL + + GGS I SF   +  GI++   S++F+A PI   + 
Sbjct: 939 TLVVVLCIFILGGSTIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 984



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 42/247 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43
           M+N  ++ +   ++  + L     +F+ Q   S    +    P                 
Sbjct: 1   MQNKGFVKVFAVLLTLVCLFYLSFSFVTQHYNSKAAEYAGGDPAKESAYLDSLSTQKVWL 60

Query: 44  -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
                      ISLGLDL+GG ++VLE++  D +        D   +F K   +      
Sbjct: 61  GYTLKQCREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYAHQA 118

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             Q      FA+   K +   +++            + K  +   +++ ++  VL     
Sbjct: 119 TSQKDFIDLFAEEYKKLDSGARLSAIFSTF------ELKDKITPQSSDAQVVSVL----- 167

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            Q +  AI+ S  ++R RID+ G+    IQR   + RIL++LPG ++P R+R+LL  +A 
Sbjct: 168 KQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227

Query: 212 MSFHKVL 218
           + F +  
Sbjct: 228 LEFWETY 234


>gi|301308233|ref|ZP_07214187.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Bacteroides sp. 20_3]
 gi|300833703|gb|EFK64319.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Bacteroides sp. 20_3]
          Length = 999

 Score =  338 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 212/826 (25%), Positives = 381/826 (46%), Gaps = 63/826 (7%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113
                 +   LQ   D     LR+ + + G+   ++++     +I +     +  E +  
Sbjct: 161 AQVVSVLKQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRK 220

Query: 114 KVTLFLQGVNSK---LN---------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
            +         +   L           +    +L      +     +   I       + 
Sbjct: 221 LLQGSANLEFWETYKLPEIYQQLVAADNVLATILSKEASADSVATDNVEKIADAADANVS 280

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--------------------GEQDPSR 201
           ++  ++ +       +E+        +                            +D  +
Sbjct: 281 EADSLLAELGQDKKDTEANQSMEEFAKQHPLFALLQISQYNGQLSPGSTVGIAQAKDMEK 340

Query: 202 LRQLLG--TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           + + L      ++    +      K      +F           +    + G  +  A A
Sbjct: 341 ISEYLNMKQVKEVLPRNLALKWGVKAIDDKEQFFELYALKVTNRDGSPALGGDVVTDANA 400

Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
           +F  +    + +V++  +  G++ +  +T++NIG+ +A+VLD  V +AP +N  I  G++
Sbjct: 401 DFMQQAGRSEQMVNMVMNAEGSKAWARLTKENIGRQIAIVLDEMVYSAPNVNDEITGGRS 460

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G+FT E A  LA +L++G +   ++IV+E  VG  LG ++I  G  + V  LVL+++
Sbjct: 461 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINAGVISFVLALVLLMI 520

Query: 378 FMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           +M   YG   GL+AD ++ LN+  T+ +L+   A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 521 YMCAFYGLVPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 580

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           R +EE R  +S+  ++  G+S A+S IFDSN+T++I  +VLF+FG G +RGFA TM + +
Sbjct: 581 RTKEELRAGKSLGKAIADGYSNAFSAIFDSNLTSIITGIVLFYFGTGPIRGFATTMIIGL 640

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
             S  TA+ + R +   ++   K+K++         L+     I F+ AR  G  I    
Sbjct: 641 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSLTKDLL-TNPKINFLGARKVGYLIPAAI 699

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +     + T GLN GIDF GG    +  N+ V    VR+ L++   G +S         
Sbjct: 700 IVLGAISMMTIGLNNGIDFTGGRNYVIRFNQEVKTDDVRNMLDAQLDGSVSVIQIGTADQ 759

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKIT-----------EIVPLSTIQNTEIVGPKISREL 665
             V   Y+  D+          K               +    + IQ+++ VGP ++ ++
Sbjct: 760 VRVSTNYKIEDNDPTVDQEIENKLFEGVKSLLPEGTTLDEFTTTFIQSSQKVGPSMADDI 819

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718
               I+ VI + I M  YI +RF+   F++GA  ++       + F+ L      F +E 
Sbjct: 820 KNSAILAVIFAMICMAAYILLRFRDVSFSVGAFASVATTTLCIISFYTLLWKVLPFSMEV 879

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           + T +AA+LT+IGYS+ND VVV+DR+R+ + LY     +  +I+ ++N TL R+  TS+ 
Sbjct: 880 DQTFIAAILTIIGYSINDTVVVFDRIRETIALYPKRDRY-QVINDALNSTLCRTFNTSLT 938

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             + VL + + GGS I SF   +  GI++   S++F+A PI   + 
Sbjct: 939 TLVVVLCIFILGGSTIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 984



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 42/247 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43
           M+N  ++ +   ++  + L     +F+ Q   S    +    P                 
Sbjct: 1   MQNKGFVKVFAVLLTLVCLFYLSFSFVTQHYNSKAAEYAGGDPAKESAYLDSLSTQKVWL 60

Query: 44  -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
                      ISLGLDL+GG ++VLE++  D +        D   +F K   +      
Sbjct: 61  GYTLKQCREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYAHQA 118

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             Q      FA+   K +   +++            + K  +   +++ ++  VL     
Sbjct: 119 TSQKDFIDLFAEEYKKLDSGARLSAIFSTF------ELKDKITPQSSDAQVVSVL----- 167

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            Q +  AI+ S  ++R RID+ G+    IQR   + RIL++LPG ++P R+R+LL  +A 
Sbjct: 168 KQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227

Query: 212 MSFHKVL 218
           + F +  
Sbjct: 228 LEFWETY 234


>gi|298374560|ref|ZP_06984518.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Bacteroides sp. 3_1_19]
 gi|298268928|gb|EFI10583.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Bacteroides sp. 3_1_19]
          Length = 999

 Score =  338 bits (865), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 212/826 (25%), Positives = 381/826 (46%), Gaps = 63/826 (7%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113
                 +   LQ   D     LR+ + + G+   ++++     +I +     +  E +  
Sbjct: 161 AQVVSVLKQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRK 220

Query: 114 KVTLFLQGVNSK---LN---------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
            +         +   L           +    +L      +     +   I       + 
Sbjct: 221 LLQGSANLEFWETYKLPEIYQQLVAADNVLATILSKEASADSVATDNVEKIADAADANVS 280

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--------------------GEQDPSR 201
           ++  ++ +       +E+        +                            +D  +
Sbjct: 281 EADSLLAELGQDKKDTEANQSMEEFAKQHPLFALLQISQYNGQLSPGSTVGIAQAKDMEK 340

Query: 202 LRQLLG--TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           + + L      ++    +      K      +F           +    + G  +  A A
Sbjct: 341 ISEYLNMKQVKEVLPRNLALKWGVKAIDDKEQFFELYALKVTNRDGSPALGGDVVTDANA 400

Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
           +F  +    + +V++  +  G++ +  +T++NIG+ +A+VLD  V +AP +N  I  G++
Sbjct: 401 DFMQQAGRSEQMVNMVMNAEGSKAWARLTKENIGRQIAIVLDEMVYSAPNVNDEITGGRS 460

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G+FT E A  LA +L++G +   ++IV+E  VG  LG ++I  G  + V  LVL+++
Sbjct: 461 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINAGVISFVLALVLLMI 520

Query: 378 FMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           +M   YG   GL+AD ++ LN+  T+ +L+   A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 521 YMCAFYGLVPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 580

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           R +EE R  +S+  ++  G+S A+S IFDSN+T++I  +VLF+FG G +RGFA TM + +
Sbjct: 581 RTKEELRAGKSLGKAIADGYSNAFSAIFDSNLTSIITGIVLFYFGTGPIRGFATTMIIGL 640

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
             S  TA+ + R +   ++   K+K++         L+     I F+ AR  G  I    
Sbjct: 641 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSLTKDLL-TNPKINFLGARKVGYLIPAAI 699

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +     + T GLN GIDF GG    +  N+ V    VR+ L++   G +S         
Sbjct: 700 IVLGAISMMTIGLNNGIDFTGGRNYVIRFNQEVKTDDVRNMLDAQLDGSVSVIQIGTADQ 759

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKIT-----------EIVPLSTIQNTEIVGPKISREL 665
             V   Y+  D+          K               +    + IQ+++ VGP ++ ++
Sbjct: 760 VRVSTNYKINDNDPTVDQEIENKLFEGVKSLLPEGTTLDEFTTTFIQSSQKVGPSMADDI 819

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718
               I+ VI + I M  YI +RF+   F++GA  ++       + F+ L      F +E 
Sbjct: 820 KNSAILAVIFAMICMAAYILLRFRDVSFSVGAFASVATTTLCIISFYTLLWKVLPFSMEV 879

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           + T +AA+LT+IGYS+ND VVV+DR+R+ + LY     +  +I+ ++N TL R+  TS+ 
Sbjct: 880 DQTFIAAILTIIGYSINDTVVVFDRIRETIALYPKRDRY-QVINDALNSTLCRTFNTSLT 938

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             + VL + + GGS I SF   +  GI++   S++F+A PI   + 
Sbjct: 939 TLVVVLCIFILGGSTIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 984



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 42/247 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43
           M+N  ++ +   ++  + L     +F+ Q   S    +    P                 
Sbjct: 1   MQNKGFVKVFAVLLTLVCLFYLSFSFVTQHYNSKAAEYAGGDPAKESAYLDSLSTQKVWL 60

Query: 44  -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
                      ISLGLDL+GG ++VLE++  D +        D   +F K   +      
Sbjct: 61  GYTLKQCREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYAHQA 118

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             Q      FA+   K +   +++            + K  +   +++ ++  VL     
Sbjct: 119 TSQKDFIDLFAEEYKKLDSGARLSAIFSTF------ELKDKITPQSSDAQVVSVL----- 167

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            Q +  AI+ S  ++R RID+ G+    IQR   + RIL++LPG ++P R+R+LL  +A 
Sbjct: 168 KQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227

Query: 212 MSFHKVL 218
           + F +  
Sbjct: 228 LEFWETY 234


>gi|255012553|ref|ZP_05284679.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. 2_1_7]
 gi|256839008|ref|ZP_05544518.1| protein-export membrane protein SecD/SecF [Parabacteroides sp. D13]
 gi|256739927|gb|EEU53251.1| protein-export membrane protein SecD/SecF [Parabacteroides sp. D13]
          Length = 999

 Score =  337 bits (864), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 212/826 (25%), Positives = 380/826 (46%), Gaps = 63/826 (7%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113
                 +   LQ   D     LR+ + + G+   ++++     +I +     +  E +  
Sbjct: 161 AQVVSVLKQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRK 220

Query: 114 KVTLFLQGVNSK---LN---------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
            +         +   L           +    +L      +     +   I       + 
Sbjct: 221 LLQGSANLEFWETYKLPEIYQQLVAADNVLATILSKEASADSVATDNVEKIADAADANVS 280

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--------------------GEQDPSR 201
           ++  ++ +       +E+        +                            +D  +
Sbjct: 281 EADSLLAELGQDKKDTEANQSMEEFAKQHPLFALLQISQYNGQLSPGSTVGIAQAKDMEK 340

Query: 202 LRQLLG--TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           + + L      ++    +      K      +F           +    + G  +  A A
Sbjct: 341 ISEYLNMKQVKEVLPRNLALKWGVKAIDDKEQFFELYALKVTNRDGSPALGGDVVTDANA 400

Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
           +F  +    + +V++  +  G++ +  +T++NIG+ +A+VLD  V +AP +N  I  G++
Sbjct: 401 DFMQQAGRSEQMVNMVMNAEGSKAWARLTKENIGRQIAIVLDEMVYSAPNVNDEITGGRS 460

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G+FT E A  LA +L++G +   ++IV+E  VG  LG ++I  G  + V  LVL+++
Sbjct: 461 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINAGVISFVLALVLLMV 520

Query: 378 FMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           +M   YG   GL+AD ++ LN+  T+ +L+   A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 521 YMCAFYGLIPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 580

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           R +EE R  +S+  ++  G+S A+S IFDSN+T++I  +VLF+FG G +RGFA TM + +
Sbjct: 581 RTKEELRAGKSLGKAIADGYSNAFSAIFDSNLTSIITGIVLFYFGTGPIRGFATTMIIGL 640

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
             S  TA+ + R +   ++   K+K++         L+     I F+ AR  G  I    
Sbjct: 641 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSITKDLL-TNPKINFLGARKVGYLIPAAI 699

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +       T GLN GIDF GG    +  N+ V    VR+ L++   G +S         
Sbjct: 700 IVLGAISFMTIGLNNGIDFTGGRNYVIRFNQEVKTDDVRNMLDAQLDGSVSVIQIGTADQ 759

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKIT-----------EIVPLSTIQNTEIVGPKISREL 665
             V   Y+  D+          K               +    + IQ+++ VGP ++ ++
Sbjct: 760 VRVSTNYKINDNDPTVDQEIENKLFEGVKSLLPEGTTLDEFTTTFIQSSQKVGPSMADDI 819

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718
               I+ VI + I M  YI +RF+   F++GA  ++       + F+ L      F +E 
Sbjct: 820 KNSAILAVIFAMICMAAYILLRFRDVSFSVGAFASVATTTLCIISFYTLLWKVLPFSMEV 879

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           + T +AA+LT+IGYS+ND VVV+DR+R+ + LY     +  +I+ ++N TL R+  TS+ 
Sbjct: 880 DQTFIAAILTIIGYSINDTVVVFDRIRETIALYPKRDRY-QVINDALNSTLCRTFNTSLT 938

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             + VL + + GGS I SF   +  GI++   S++F+A PI   + 
Sbjct: 939 TLVVVLCIFILGGSTIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 984



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 42/247 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43
           M+N  ++ +   ++  + L     +F+ Q   S    +    P                 
Sbjct: 1   MQNKGFVKVFAVLLTLVCLFYLSFSFVTQHYNSKAAEYAGGDPAKESAYLDSLSTQKVWL 60

Query: 44  -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
                      ISLGLDL+GG ++VLE++  D +        D   +F K   +      
Sbjct: 61  GYTLKQCREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYAHQA 118

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             Q      FA+   K +   +++            + K  +   +++ ++  VL     
Sbjct: 119 TSQKDFIDLFAEEYKKLDSGARLSAIFSTF------ELKDKITPQSSDAQVVSVL----- 167

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            Q +  AI+ S  ++R RID+ G+    IQR   + RIL++LPG ++P R+R+LL  +A 
Sbjct: 168 KQELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227

Query: 212 MSFHKVL 218
           + F +  
Sbjct: 228 LEFWETY 234


>gi|300778699|ref|ZP_07088557.1| probable protein-export transmembrane SecDF protein
           [Chryseobacterium gleum ATCC 35910]
 gi|300504209|gb|EFK35349.1| probable protein-export transmembrane SecDF protein
           [Chryseobacterium gleum ATCC 35910]
          Length = 969

 Score =  337 bits (864), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 198/803 (24%), Positives = 350/803 (43%), Gaps = 56/803 (6%)

Query: 61  DEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADK 114
                V   +        + +R+ + K G    ++++     +I++     +  + +   
Sbjct: 170 QVKSIVKRKIDASVGTAFEVIRTRIDKLGAIQPNVQRVPGTARISVEMPGMKDIDKVKKM 229

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +    +    ++   P+              + +            +    +   ++D++
Sbjct: 230 LQTSAKLQFWEVQQVPE-------IAPYFQTLTTMVAAKGDSMGVAKNVNFMNLLQLDKL 282

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             +     +L    ++ ++   +    LR       +           K         + 
Sbjct: 283 RTNGVANVKLSDTAVVNKILNSKVAQSLRPANIKYTQFM------WGYKPEATDTESLVL 336

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +       +  V           +    +  + VVD+  D  GA+ +  +T  N+GKP+
Sbjct: 337 YAIRGNINQKAPV----DGAVETASIGYDELSRIVVDMQMDSKGAKEWKTLTEKNVGKPV 392

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           AV LD RV TAP +  AIP+G+ QISGNF+ E A  L  +L AG LP    +V+   VG 
Sbjct: 393 AVTLDNRVYTAPNVVGAIPNGRTQISGNFSQEEAKELVDVLGAGKLPAGAKVVQATVVGP 452

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG ++I  G  + +    +I++++I  YG  G+ A  ++ +N+     ++     TLTL
Sbjct: 453 SLGQEAIDSGLMSFIIAFAIIIVYIIFYYGGAGVYAVIAMVINLFYIFGIMDSGDFTLTL 512

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL + +AVD+N+++ ER +EE    +S+  +   GF  A + I D + T  +  
Sbjct: 513 PGIAGIVLTMAVAVDTNVIIYERTKEELFAGKSILEAYKDGFKHALNAIIDGHTTTFLTA 572

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           VVLFFFG G ++GFA+T+ + I +++FT++ + R M   I                   +
Sbjct: 573 VVLFFFGTGPIKGFALTLMIGIAMTLFTSVLLSRVM---IFSRLNKGKGLSVWTPATKNL 629

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I F+  R +   IS + +I  I  + THG  YGIDF GG    V  ++ V    V
Sbjct: 630 FRNTWIDFIGKRKYAYIISAVLTIVCIISIATHGFKYGIDFTGGRNYVVRFDKDVKAEDV 689

Query: 595 RSNLESLQIGDI------SFQNFDGEKNFLVRLQYQPGDSVAQTRVL------------- 635
              L +L   +         + F   K   +   Y   D   +   +             
Sbjct: 690 EEKLVALFKTEDGKNSSVEAKTFGNNKQLKISTDYLIQDESLKADQIIEQKLFEGLKSQL 749

Query: 636 ---EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
                +K   +     + I ++E VGP ++ ++   GI  V+ +   + IYI +RF+ W 
Sbjct: 750 PAGTTLKDFKSADKDHAGIISSEKVGPSVADDIQTHGIYAVLAALAMIFIYILVRFRKWQ 809

Query: 692 FALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           F+LGA+  L  D    LG ++L      F +E N   +AA+LT++GYS+ND V+++DR+R
Sbjct: 810 FSLGAVAALFHDAVIILGAYSLLHKYMPFNMEINQDFIAAILTVLGYSINDTVIIFDRIR 869

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           + ++    S++   L D SI+ TLGR+  TS    + +L + ++GG  +  F   M  GI
Sbjct: 870 EYLRE-KKSLTLAGLFDDSISSTLGRTFNTSFTTILVILAIFIFGGDNLRGFMFAMLIGI 928

Query: 806 VVAASSSIFIAAPILLFIYDWRA 828
                SSIF+A+ I         
Sbjct: 929 GFGTYSSIFVASAIAYDFLKTGK 951



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 114/312 (36%), Gaps = 15/312 (4%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE-LRSFLKKEGIGVFSMRQIQNK 97
                + LGLDL+GG +++LE+++ D VN      ++  L   L K      +  +    
Sbjct: 70  AKDKEMKLGLDLKGGINVLLEINQRDLVNDLTNYSTNPVLIEALNKTDEAQKNSTK---- 125

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
                          D V           + +   N  +T  +        ++ + + I 
Sbjct: 126 -----PYIDNFFEQFDVVNKAKGANLKLADPEIFGNTTLTEVKYNTPDEQVKSIVKRKID 180

Query: 158 HAIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
            ++  + E+IR RID++G  +    +  G+ RI +++PG +D  +++++L T+AK+ F +
Sbjct: 181 ASVGTAFEVIRTRIDKLGAIQPNVQRVPGTARISVEMPGMKDIDKVKKMLQTSAKLQFWE 240

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV----EISGIHLNGATANFDPKTHKPVVDI 272
           V        +   +  +  + G+   V   V     +    L          +   VV+ 
Sbjct: 241 VQQVPEIAPYFQTLTTMVAAKGDSMGVAKNVNFMNLLQLDKLRTNGVANVKLSDTAVVNK 300

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
             +   A+                  +     + V+     +   +   +  +ETA I  
Sbjct: 301 ILNSKVAQSLRPANIKYTQFMWGYKPEATDTESLVLYAIRGNINQKAPVDGAVETASIGY 360

Query: 333 AMLRAGSLPIKL 344
             L    + +++
Sbjct: 361 DELSRIVVDMQM 372


>gi|227538022|ref|ZP_03968071.1| protein-export membrane protein SecD/SecF [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227242098|gb|EEI92113.1| protein-export membrane protein SecD/SecF [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 985

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 217/810 (26%), Positives = 374/810 (46%), Gaps = 47/810 (5%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVNS 124
           +  +Q     LR+ + K G+   +++  Q  N+I +       ++ +   +    +    
Sbjct: 176 DNAIQNSYKVLRTRIDKFGVASPNIQIQQGTNRILIELPGVNDEQRVRKLLQGSAKLEFY 235

Query: 125 KLNVDPK--KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE---- 178
           + + + +    L         ++   + +          +   ++       G S+    
Sbjct: 236 ETHSNFQVYPLLENVNKTLAATLKAQKTSSADTTKADTTKKENLLANLGAGKGKSDSAAV 295

Query: 179 ---------------------STIQRLGSHRILIQLPGEQDPSRLRQLLGTTA--KMSFH 215
                                +  Q       ++ +   +D +++  LL       +   
Sbjct: 296 NAKLGEDNPLFAVLTPSVAMGANNQMQLVPGPMVGIAQLKDTAKVNALLAKPEIKSIIPA 355

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
            +    + K        L         +++   ++G  +  A  +  P+T++PVV +  +
Sbjct: 356 NLKLLWAVKPEQNSPNALSLYAIRPSGIDNGAVLTGDVITDAKNDIAPQTNQPVVSMQMN 415

Query: 276 EMGARRFFEVTRDNIGK--PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
             GAR + ++T         +A+VLD  V +AP +N+ IP+G +QISG+FT +    LA 
Sbjct: 416 NEGAREWRKITAKAAQNKEAIAIVLDNVVYSAPNVNEEIPNGSSQISGSFTTDDTKDLAN 475

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
           +L+AG LP    IVEE  VG  LG  +I  G  + +   V++++FM+V Y + G  A+ +
Sbjct: 476 VLKAGRLPTTAKIVEEAIVGPSLGQAAIDAGVNSAIIAFVVVLIFMVVYYNRAGWAANIA 535

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           + +NV   L +L+ L A LTLP IAGIVL +G AVD+N+L+ ERIREE    +S+  ++ 
Sbjct: 536 VIVNVFFLLGVLASLNAVLTLPGIAGIVLTMGTAVDANVLIYERIREELGLGKSMRQAIA 595

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            G+  A  +I DS IT  +  +VLFFFG G + GFA TM + I+ S+FTAI I R +  F
Sbjct: 596 DGYKHAMPSILDSQITTFLVGIVLFFFGSGPILGFATTMMVGIVTSLFTAIFISRLIFEF 655

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
           ++      S+     +            F++ R     +SI+ +I  +  +FT G   G+
Sbjct: 656 MLDKDMKISVSYPWSANTLR---NANFNFIKNRKKFYIVSIIAAIICLGSIFTKGFTLGV 712

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           DF+GG    V   + V+L  VR NL+ +       + F  E    V   Y+  ++     
Sbjct: 713 DFQGGRTYTVRFEKAVNLENVRQNLDEVFQKTTEVKTFGSENQVRVTTTYKIDETSDAVD 772

Query: 634 VLEMVKKKI---TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
              + K  +           I + + VGP I+ ++  +     I S I +  YI IRF+ 
Sbjct: 773 KEVLDKLNLGLSKIGGNKHEILSQQKVGPSIANDIKSRATYSAIFSIIIIATYILIRFRK 832

Query: 690 WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           W ++ GA    I D    LG F+L      F ++ +   VAA+LT+I YSVND VVV+DR
Sbjct: 833 WQYSAGAAIATIHDAVILLGLFSLLDGIVPFSLDIDQHFVAAILTVIAYSVNDTVVVFDR 892

Query: 744 MRKNMKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           +R+ +    + +    D+++ +IN TL R++ TS+     +  + ++GG VI  F+  + 
Sbjct: 893 LREYVNKPNSHNEKMSDIVNHAINTTLSRTIITSLTIIFVLAVLFIFGGEVIRGFSFAIL 952

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            GIVV   SSIF+AAP +      R    +
Sbjct: 953 IGIVVGTYSSIFLAAPSVYDFRKGRHMAEK 982



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 82/190 (43%), Gaps = 14/190 (7%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
           N ++LGLDL+GG ++ +E+  D+ +        D    F    G  V   R     +   
Sbjct: 74  NELALGLDLKGGMNVTMEISLDELITNLANNPKD--EKFNTSLGNAVKKSRSSNKSLVDL 131

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
           F +       +  +  F              +L+  T+  +      Q   D     AI+
Sbjct: 132 FIEDYKSSGASTPLASFFA-------TQSNSSLIKATSSDKEVANFLQKEADN----AIQ 180

Query: 162 QSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
            S +++R RID+ G++   IQ    ++RILI+LPG  D  R+R+LL  +AK+ F++   N
Sbjct: 181 NSYKVLRTRIDKFGVASPNIQIQQGTNRILIELPGVNDEQRVRKLLQGSAKLEFYETHSN 240

Query: 221 NSKKGFMFGV 230
                 +  V
Sbjct: 241 FQVYPLLENV 250


>gi|288928982|ref|ZP_06422828.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella sp. oral taxon 317 str. F0108]
 gi|288329966|gb|EFC68551.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella sp. oral taxon 317 str. F0108]
          Length = 1003

 Score =  337 bits (863), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 207/845 (24%), Positives = 373/845 (44%), Gaps = 73/845 (8%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112
            + +  +   +Q   D     +R+ + K G+   ++++    + +I +     R  E + 
Sbjct: 156 AEVEKVLRTEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERVR 215

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL----SQNNIDQVISHAIEQSMEIIR 168
             +         +     +    +T     ++       +            EQ +   +
Sbjct: 216 KLLQGSANLEFWETFNASEIVPYLTQLNARLASEQNGTDTAAVDTANARAKAEQEVAKAK 275

Query: 169 QRIDQIGISESTIQRLGSHRILIQ----------------------------LPGEQDPS 200
               +  ++    ++    +                                    +D +
Sbjct: 276 NEQPKFKLNTGDDKKTDVAQRANNAQTAAAIKANPLFSRLQPTGGNSLSIVGYANIRDTA 335

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD----GNQYLVEDKVEISGIHLNG 256
            + +L+                          +++              +  I G  +  
Sbjct: 336 AINKLIYGPVAKQVLPPDLKLLWSAKPADQAKMKNIYELHAIKVTSTNGRAPIEGDVVTD 395

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316
           A+  F+  T  P V +  +  GARR+  +T+ N+GK +A+VLD  V +AP ++  I  G 
Sbjct: 396 ASDEFNHTTGAPQVSMRMNSDGARRWAALTKANVGKAIAIVLDNAVYSAPRVSNEIDGGS 455

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
           + ISGNFTIE    LA  L++G +P    IV+E  VG  LG+ SI +G  +     V+++
Sbjct: 456 SSISGNFTIEETKDLANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIQSFAIAFVVLM 515

Query: 377 LFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
           ++M+++YG   G++A+ ++ +N+  TL +L+   A LTL  IAG+VL +G AVD+N+L+ 
Sbjct: 516 VYMVLMYGFTPGMMANTALIVNLFFTLGILTSFQAALTLSGIAGMVLSLGTAVDANVLIY 575

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ER +EE    + +  ++  G+  A+S IFDSN+T++I  ++L+ FG G +RGFA T+ + 
Sbjct: 576 ERTKEELAAGKGLKQAIKEGYGNAFSAIFDSNLTSIITGIILYSFGTGPIRGFATTLIIG 635

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
           I+ S FTA+ + R +  + +   +   +              +   FM        +  +
Sbjct: 636 IVCSFFTAVFLTRLVYEYQLNKDRWTKLTFTTGFSKNF-MQNVHFPFMSVYKKTFVLVAV 694

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                +    T GL+  IDF GG    V   + V    VR  L +   G  +     G  
Sbjct: 695 LLAVFVGSFVTRGLSRSIDFTGGRNYVVTFEKQVQPEQVRGILANAFPGCTTGALALGTD 754

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKI--------------------TEIVPLSTIQNTE 655
           +  +R+            V +  +  +                     +I    +I ++ 
Sbjct: 755 HKTIRISTNYKIESNSPTVDDEAETILYNALKKAGLVSQKNVDAFKNPDIRQGGSIISST 814

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL- 713
            VGP +++++    I+ V+++  A+ +YI IRF+   F++G+   L +D T  +G ++L 
Sbjct: 815 KVGPSVAKDITYGAIISVLLAIFAIFVYILIRFRNVAFSVGSTVALAIDTTFVIGLYSLL 874

Query: 714 -----FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                F +E + T + A+LT+IGYS+NDKVVV+DR+R+NMKL+     FR L + SIN+T
Sbjct: 875 WGFMPFSLEIDQTFIGAILTVIGYSINDKVVVFDRIRENMKLHPK-QDFRSLFNDSINQT 933

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS +  I +L +   GG  I SFA  M+ G++    SSIFIAAPI         
Sbjct: 934 LARTINTSFSTLIVLLCILFLGGESIQSFAFAMSLGVIFGTLSSIFIAAPIAFLTLGKTQ 993

Query: 829 KNARI 833
           K   +
Sbjct: 994 KGRAL 998



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 44/358 (12%), Positives = 109/358 (30%), Gaps = 42/358 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPK---------------- 41
           M+N   +++   ++    +     +                + +                
Sbjct: 1   MQNKGIVIVTAVLLTLASIFYLSFSVATRYYDGKAAELKDPIAQQDYKDSVKYLGIYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR-SFLKKEGIGVFSMRQIQN 96
                +I LGLDL+GG +++LE+   D +       +D      L++      + +    
Sbjct: 61  RCLETQIGLGLDLKGGMNVILEISVPDVIETLADHKTDAAFTKSLEQAKKEEETSQSDFI 120

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
            + + +       +   ++    Q             +                 +   +
Sbjct: 121 SLFIKYYKQNAPGHKLAELFATQQLQGKVSPQSSDAEVEKV--------------LRTEV 166

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
             AI+ S  ++R RID+ G+ +  IQ+      RI++++PG ++P R+R+LL  +A + F
Sbjct: 167 QAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERVRKLLQGSANLEF 226

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
            +    +    ++  +     S+ N    +     +      A        ++       
Sbjct: 227 WETFNASEIVPYLTQLNARLASEQN--GTDTAAVDTANARAKAEQEVAKAKNEQPKFKLN 284

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                +       +N     A+  +              S     +   T     ++ 
Sbjct: 285 TGDDKKTDVAQRANNAQTAAAIKANPLFSRLQPTGGNSLSIVGYANIRDTAAINKLIY 342


>gi|167763764|ref|ZP_02435891.1| hypothetical protein BACSTE_02144 [Bacteroides stercoris ATCC
           43183]
 gi|167697880|gb|EDS14459.1| hypothetical protein BACSTE_02144 [Bacteroides stercoris ATCC
           43183]
          Length = 1002

 Score =  337 bits (863), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 213/824 (25%), Positives = 379/824 (45%), Gaps = 62/824 (7%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ +++   +I +     +  E +   +     
Sbjct: 170 EEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGSAN 229

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS----------------- 163
               +          + + + ++  +L+        + ++                    
Sbjct: 230 LEFWETYNAKDVASYLQSADAKLRAILATTEDAAEATDSVAAEAPAVAQATSTTDSLAAA 289

Query: 164 -----------MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
                      +E I++    + + +      G            D ++   +    A+M
Sbjct: 290 LKGESKTQAADLEQIKKEHPLLAVLQVNPSGQGPVVGYANYKDTADINKYLSMPEIQAEM 349

Query: 213 SFHKVLPNNSKK-GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                L        +    +              +  + G  +  A   F     KP V 
Sbjct: 350 PKDLRLKWGVSPFEYDPKAQTFELYAIKSTERNGRAPLEGDVVVNAKDEF-DHYGKPAVS 408

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +S +  GARR+ ++T+ N+GK +A+VLDG V +AP +NQ I  G +QI+G+FT E A  L
Sbjct: 409 MSMNTDGARRWAQLTKQNVGKAIAIVLDGYVYSAPNVNQEITGGNSQITGHFTPEQAKDL 468

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVA 390
           A +L++G +P   +IV+E  VG  LG  SI  G  + V  L+L++++M  +YG   G+VA
Sbjct: 469 ANVLKSGKMPAPAHIVQEDIVGPSLGQASINAGIMSFVVALILLMIYMCSMYGFIPGMVA 528

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
           + ++ LN+  TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  + V  
Sbjct: 529 NGALILNLFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKGVKK 588

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +L  G+S A+S IFDSN+T++I  ++LF FG G +RGFA T+ + ILIS FTA+ + R  
Sbjct: 589 ALADGYSNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILISFFTAVFMTRLF 648

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
               +   K+ ++  +      L    +   FM      + ++ +  +  I  L   GL+
Sbjct: 649 YEHFMNKDKLLNLTFSTGISKNL-MANVHFDFMGRNKLWMTLAGVAVVVCIGFLSIRGLS 707

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
             IDF GG    V     V+   VR  + S            G     VR+         
Sbjct: 708 QSIDFTGGRNFKVQFENKVEPEQVRELISSKFGDANVSVIAIGADGKTVRISTNYRIEEE 767

Query: 631 QTRVLEMVKKKI-------------------TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
              +   ++  +                    E     +I +++ VGP I+ ++    I 
Sbjct: 768 GNNIDSEIEAYLYETLKPLLTQNITLETFIDRENHTGGSIISSQKVGPSIADDIKVSAIW 827

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVA 724
            V+++ IA+ +YI +RF+   +++G++  L  D    LG +++      F +E + T + 
Sbjct: 828 SVVLALIAIGLYILLRFRNIAYSIGSVCALACDTIIILGAYSMFWGILPFSLEIDQTFIG 887

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT IGYS+NDKVV++DR+R+   LY    + + L + S+N TL R++ TS++  I +L
Sbjct: 888 AILTAIGYSINDKVVIFDRVREFFGLYPKR-NKKVLFNDSLNTTLARTINTSLSTLIVLL 946

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + + GG  I SFA  M  G+V    SS+F+A+PI   +   + 
Sbjct: 947 CIFILGGDSIRSFAFAMILGVVFGTLSSLFVASPIAYMLMKNKK 990



 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/184 (19%), Positives = 85/184 (46%), Gaps = 7/184 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I   +IVGP + +  I  GI+  +++ I ++IY+   + +   + A   LIL++  TLG
Sbjct: 482 HIVQEDIVGPSLGQASINAGIMSFVVALILLMIYMCSMYGFIPGMVANGALILNLFFTLG 541

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             + F     ++ +A ++  +G +V+  V++Y+R ++ ++        +  +    +   
Sbjct: 542 ILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKGVKKALADGYSNAF 598

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +++ + I+ + +  +G   I  FA  +  GI++    S F A  +    Y+    
Sbjct: 599 SAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILI----SFFTAVFMTRLFYEHFMN 654

Query: 830 NARI 833
             ++
Sbjct: 655 KDKL 658



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/261 (18%), Positives = 98/261 (37%), Gaps = 44/261 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ-------------------------SMLDRF 35
           M+N  ++ +   ++  + +     +F+ +                         +    F
Sbjct: 1   MQNKGFVRVFAILLTLVCVFYLSFSFVTRHYAHKAKEFAKGDVKVEQDYLDSLSNEKVWF 60

Query: 36  PSAMPKN----RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
            +   K      ISLGLDL+GG +++LEV   D +       SDE  +            
Sbjct: 61  GNWTLKQCREMEISLGLDLKGGMNVILEVSVPDVIKALADNKSDEAFNQ--ALATAAKQA 118

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              Q+ +   F        I +   +      S+L    +    V     +  +   +  
Sbjct: 119 TTSQDDVITLF--------IREYHRIAPDASLSQLFATQQLKDKVNQKSSDAEV---EKV 167

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTT 209
           + + +  A++ S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R+LL  +
Sbjct: 168 LREEVKAAVDNSFNVLRTRIDRFGVVQPNIQSLEDKMGRIMVELPGIKEPERVRKLLQGS 227

Query: 210 AKMSFHKVLPNNSKKGFMFGV 230
           A + F +         ++   
Sbjct: 228 ANLEFWETYNAKDVASYLQSA 248


>gi|237711518|ref|ZP_04541999.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. 9_1_42FAA]
 gi|229454213|gb|EEO59934.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. 9_1_42FAA]
          Length = 977

 Score =  337 bits (862), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 211/826 (25%), Positives = 373/826 (45%), Gaps = 65/826 (7%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ ++    +I +     +  E +   +     
Sbjct: 148 EEVKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSAN 207

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI---- 176
               +     +    +++ +  +  +L+  +           ++ + +            
Sbjct: 208 LEFWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVAADTVAVAQASAISAADSLAA 267

Query: 177 -------SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN--------- 220
                  S S           +    + +P+    ++G        +V            
Sbjct: 268 ALKGETASNSAAMEQMKKEHPLASVLQLNPNGYGSVVGYADYKDTAQVNQYLAMKEVKEM 327

Query: 221 ----------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
                          F    R              +  + G  +     +   + +KP V
Sbjct: 328 LPKDLRLKWGVKAADFDKQGRIFELYAIKSTERNGRAPLEGDVITD-AKDEYDQFNKPCV 386

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +S +  GARR+  +T++N+GK +A+VLDG V +AP +N  I  G +QI+GNFT E    
Sbjct: 387 SMSMNTDGARRWAVLTKNNVGKAIAIVLDGYVYSAPNVNGEITGGHSQITGNFTPEVTKD 446

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLV 389
           LA +L++G +P    IV+E  VG  LG +SI +G  + V  L+L++++M  +YG   G+V
Sbjct: 447 LANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMV 506

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ +N   TL +L+   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  ++V 
Sbjct: 507 ANCALVVNFFFTLGILTSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKTVK 566

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +L  G+S A+S IFDSN+T++I  ++LF+FG G +RGFA T+ + IL S FTA+ + R 
Sbjct: 567 AALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRI 626

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +    +   K  ++         L    +   FM        +     +  I   F  GL
Sbjct: 627 VYEHFMNKDKWLNLTFTTGISKNL-MQNVNYNFMGMMKRSFTVFGAIIVICIISFFIRGL 685

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
              IDF GG    V   + V+   VR  L+     D       G     +R+      + 
Sbjct: 686 AQSIDFTGGRNFVVQFEQQVEPETVRDLLKKKITEDNVQAIALGTDKKTIRITTNYRINE 745

Query: 630 AQTRVLEMVKKKITEIVPLST---------------------IQNTEIVGPKISRELIRK 668
               +   +++ + + +                         I +++ VGP I+ ++   
Sbjct: 746 ESPTIDSEIEEFLYQSLKDGNLLGEGTTLEIFIDRDNRVGGSIISSQKVGPSIADDIKTS 805

Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721
            I  V+ + +A+ +YI +RF+   +++GA   L +D    +G ++L      F +E + T
Sbjct: 806 AIWSVLFALVAIGLYILLRFRNVAYSVGATVALAVDTILIIGAYSLCYGWVPFSLEIDQT 865

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            + AVLT IGYS+NDKVV++DR+R+   LY    +   L + S+N TL R++ TS++  I
Sbjct: 866 FIGAVLTAIGYSINDKVVIFDRIREFFGLYPKR-NRMQLFNDSLNTTLARTINTSLSTLI 924

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +L + V GG  I SFA  M  G+V+   SSIFIAAPI       +
Sbjct: 925 VLLCIFVLGGDSIRSFAFAMILGVVIGTLSSIFIAAPIAYLTMGNK 970



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 83/176 (47%), Gaps = 3/176 (1%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             +IVGP + +E I +GI+  +++ I ++IY+   +     + A   L+++   TLG   
Sbjct: 464 QEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMVANCALVVNFFFTLGILT 523

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F     ++ +A ++  +G +V+  V++Y+R ++ ++      + +  +    +      
Sbjct: 524 SFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKTVKAALADGYSNAFSAI 580

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +++ + I+ + +  +G   I  FA  +  GI+ +  +++F+   +     +   
Sbjct: 581 FDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRIVYEHFMNKDK 636



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/177 (25%), Positives = 79/177 (44%), Gaps = 15/177 (8%)

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
            I LGLDL+GG +++LEV   D V       +DE  +  K            Q+     F
Sbjct: 50  EIGLGLDLKGGMNVILEVSVPDVVKALADNKTDEAFN--KAVAEASKQSITSQDDFITLF 107

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
                K+    K+               K  +   +++ E+  VL +      +  AI+ 
Sbjct: 108 VKEYKKQAPNGKLAELFAT------QQLKDKVTTRSSDSEVEKVLREE-----VKAAIDN 156

Query: 163 SMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           S  ++R RID+ G+++  IQ       RI+++LPG ++P R+R+LL  +A + F + 
Sbjct: 157 SYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSANLEFWET 213


>gi|212692205|ref|ZP_03300333.1| hypothetical protein BACDOR_01701 [Bacteroides dorei DSM 17855]
 gi|237726025|ref|ZP_04556506.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           sp. D4]
 gi|265752943|ref|ZP_06088512.1| protein-export membrane protein SecD/SecF [Bacteroides sp.
           3_1_33FAA]
 gi|212665082|gb|EEB25654.1| hypothetical protein BACDOR_01701 [Bacteroides dorei DSM 17855]
 gi|229435833|gb|EEO45910.1| bifunctional preprotein translocase subunit SecD/SecF [Bacteroides
           dorei 5_1_36/D4]
 gi|263236129|gb|EEZ21624.1| protein-export membrane protein SecD/SecF [Bacteroides sp.
           3_1_33FAA]
          Length = 995

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 211/826 (25%), Positives = 373/826 (45%), Gaps = 65/826 (7%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + LR+ + + G+   +++ ++    +I +     +  E +   +     
Sbjct: 166 EEVKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSAN 225

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI---- 176
               +     +    +++ +  +  +L+  +           ++ + +            
Sbjct: 226 LEFWETFDAKEIVPYLSSVDNRLRDILAVESGAASADSVAADTVAVAQASAISAADSLAA 285

Query: 177 -------SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN--------- 220
                  S S           +    + +P+    ++G        +V            
Sbjct: 286 ALKGETASNSAAMEQMKKEHPLASVLQLNPNGYGSVVGYADYKDTAQVNQYLAMKEVKEM 345

Query: 221 ----------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
                          F    R              +  + G  +     +   + +KP V
Sbjct: 346 LPKDLRLKWGVKAADFDKQGRIFELYAIKSTERNGRAPLEGDVITD-AKDEYDQFNKPCV 404

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +S +  GARR+  +T++N+GK +A+VLDG V +AP +N  I  G +QI+GNFT E    
Sbjct: 405 SMSMNTDGARRWAVLTKNNVGKAIAIVLDGYVYSAPNVNGEITGGHSQITGNFTPEVTKD 464

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLV 389
           LA +L++G +P    IV+E  VG  LG +SI +G  + V  L+L++++M  +YG   G+V
Sbjct: 465 LANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMV 524

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ +N   TL +L+   A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  ++V 
Sbjct: 525 ANCALVVNFFFTLGILTSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRAGKTVK 584

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +L  G+S A+S IFDSN+T++I  ++LF+FG G +RGFA T+ + IL S FTA+ + R 
Sbjct: 585 AALADGYSNAFSAIFDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRI 644

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +    +   K  ++         L    +   FM        +     +  I   F  GL
Sbjct: 645 VYEHFMNKDKWLNLTFTTGISKNL-MQNVNYNFMGMMKRSFTVFGAIIVICIISFFIRGL 703

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
              IDF GG    V   + V+   VR  L+     D       G     +R+      + 
Sbjct: 704 AQSIDFTGGRNFVVQFEQQVEPETVRDLLKKKITEDNVQAIALGTDKKTIRITTNYRINE 763

Query: 630 AQTRVLEMVKKKITEIVPLST---------------------IQNTEIVGPKISRELIRK 668
               +   +++ + + +                         I +++ VGP I+ ++   
Sbjct: 764 ESPTIDSEIEEFLYQSLKDGNLLGEGTTLEIFIDRDNRVGGSIISSQKVGPSIADDIKTS 823

Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLT 721
            I  V+ + +A+ +YI +RF+   +++GA   L +D    +G ++L      F +E + T
Sbjct: 824 AIWSVLFALVAIGLYILLRFRNVAYSVGATVALAVDTILIIGAYSLCYGWVPFSLEIDQT 883

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            + AVLT IGYS+NDKVV++DR+R+   LY    +   L + S+N TL R++ TS++  I
Sbjct: 884 FIGAVLTAIGYSINDKVVIFDRIREFFGLYPKR-NRMQLFNDSLNTTLARTINTSLSTLI 942

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +L + V GG  I SFA  M  G+V+   SSIFIAAPI       +
Sbjct: 943 VLLCIFVLGGDSIRSFAFAMILGVVIGTLSSIFIAAPIAYLTMGNK 988



 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 83/176 (47%), Gaps = 3/176 (1%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             +IVGP + +E I +GI+  +++ I ++IY+   +     + A   L+++   TLG   
Sbjct: 482 QEDIVGPSLGQESINQGIISFVVALILLMIYMCAMYGLIPGMVANCALVVNFFFTLGILT 541

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F     ++ +A ++  +G +V+  V++Y+R ++ ++      + +  +    +      
Sbjct: 542 SFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKTVKAALADGYSNAFSAI 598

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +++ + I+ + +  +G   I  FA  +  GI+ +  +++F+   +     +   
Sbjct: 599 FDSNLTSIITGIILFYFGTGPIRGFATTLIIGILCSFFTAVFLTRIVYEHFMNKDK 654



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 50/244 (20%), Positives = 96/244 (39%), Gaps = 40/244 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAM------------------ 39
           M+N  ++ +   ++  + +     +F+ +       + P                     
Sbjct: 1   MQNKGFVKVFAVLLTLVCVFYLSFSFVTRYHMDKAAQDPKGEAHYLDSMQNEKVYLGSYT 60

Query: 40  ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95
                +  I LGLDL+GG +++LEV   D V       +DE  +  K            Q
Sbjct: 61  LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKTDEAFN--KAVAEASKQSITSQ 118

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           +     F     K+    K+               K  +   +++ E+  VL +      
Sbjct: 119 DDFITLFVKEYKKQAPNGKLAELFAT------QQLKDKVTTRSSDSEVEKVLREE----- 167

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
           +  AI+ S  ++R RID+ G+++  IQ       RI+++LPG ++P R+R+LL  +A + 
Sbjct: 168 VKAAIDNSYNVLRTRIDRFGVAQPNIQALEGKMGRIMVELPGIKEPERVRKLLQGSANLE 227

Query: 214 FHKV 217
           F + 
Sbjct: 228 FWET 231


>gi|218264587|ref|ZP_03478382.1| hypothetical protein PRABACTJOHN_04088 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221895|gb|EEC94545.1| hypothetical protein PRABACTJOHN_04088 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1004

 Score =  336 bits (861), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 213/826 (25%), Positives = 383/826 (46%), Gaps = 67/826 (8%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQ 120
            D +   +    + LR+ + + G+   ++++     +I +     +  E +   +     
Sbjct: 168 KDELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227

Query: 121 GVNSKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
               +     +  + L+         +       +   +  +E + E++         ++
Sbjct: 228 LEFWETYDLPEIYQQLVAADNMLATILKSDDTAAEGSETTTVEATSEVVADNAAAETTND 287

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           +            +    Q      +L    A +            G + G+   +D   
Sbjct: 288 ADSLLAKIGEDKPEAQAAQSMEEFAKLHPLFA-VLQINQYNGQLASGPVVGIADKKDMAK 346

Query: 239 NQYLVE---------------------------------------DKVEISGIHLNGATA 259
               +                                            + G  +  A A
Sbjct: 347 IDEYLNMKQVKDLLPRNLSLKWGVKAIDEKEQFFYLYAIKKTNRDGTPALGGDVVTDANA 406

Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
           +F  +    + VVD+  +  GA+ +  +T++NIGK +A+VLD  V +AP +   I  G++
Sbjct: 407 DFVQQAGRSEQVVDMVMNAEGAKAWARLTKENIGKAVAIVLDDMVYSAPNVQVEITGGRS 466

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G+FT E A  LA +L++G +   ++IV+E  VG  LG ++I  G  + V  LVL++ 
Sbjct: 467 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINSGVISFVLALVLLMF 526

Query: 378 FMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           +M   YG   GL+AD ++ LN+  T+ +L+   A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 527 YMCAFYGVLPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 586

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           R +EE R  +S+  ++  G+S A+S IFDSN+T++I  VVLF+FG G +RGFA TM + +
Sbjct: 587 RTKEELRAGKSLSKAIADGYSNAFSAIFDSNLTSIITGVVLFYFGTGPIRGFATTMIIGL 646

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
             S  TA+ + R +   ++   K+K++         L+     I F+ AR  G  I ++ 
Sbjct: 647 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSITKDLL-TNPKINFLGARKVGYLIPVVI 705

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +     + T GLN GIDF GG    +   + V    VR+ L++   G +S         
Sbjct: 706 IVLGAISMSTIGLNNGIDFTGGRNYVIRFAQDVKTDEVRNLLDAQLDGSVSVIQIGTPDQ 765

Query: 617 FLVRLQYQPGDS------VAQTRVLEMVKKKITEIVP-----LSTIQNTEIVGPKISREL 665
             V   Y+  D+        + ++ E VK  + E           IQ+++ VGP ++ ++
Sbjct: 766 VRVSTNYKIEDNDPAIDQEIENKLFEGVKSLLPEGTTLAQFTDQYIQSSQKVGPSMADDI 825

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718
                + V+ +   M  YI +RF+   F++GA  ++ +     + F+ L      F +E 
Sbjct: 826 KNAAFLAVVFAMFCMAAYILLRFRDISFSVGAFASVAVTTLCIISFYTLLWKVLPFSMEV 885

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           + T +AA+LT+IGYS+ND VVV+DR+R+ + LY     +  +I+ ++N TL R+  TS+ 
Sbjct: 886 DQTFIAAILTIIGYSINDTVVVFDRIRETIGLYPKRDRY-QVINDALNSTLSRTFNTSLT 944

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             + VL + + GG+ I SF   +  GI++   S++F+A PI   + 
Sbjct: 945 TLVVVLCIFILGGATIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 990



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 66/399 (16%), Positives = 134/399 (33%), Gaps = 46/399 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43
           M+N  ++ +   ++  + +     +F+ +   S    +    P                 
Sbjct: 1   MQNKGFVKVFAVLLTLVCMFYLSFSFVTRHYNSKATEYAGGDPVKESSYLDSLSTQKVWL 60

Query: 44  -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
                      ISLGLDL+GG ++VLE++  D +        D   +F K   +   +  
Sbjct: 61  GYTLKECREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYENQA 118

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             Q      FA+   K +   +++            + K  +   +++ ++  VL     
Sbjct: 119 ASQKDFIDLFAEEYKKLDNGARLSAIFSTF------ELKDKITPQSSDAQVIAVL----- 167

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211
              +  AI+ S  ++R RID+ G+    IQR   + RIL++LPG ++P R+R+LL  +A 
Sbjct: 168 KDELQSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F +          ++      D+     L  D     G       A  +        +
Sbjct: 228 LEFWETYDL----PEIYQQLVAADNMLATILKSDDTAAEGSETTTVEATSEVVADNAAAE 283

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
            + D           +       ++    ++     + Q         SG          
Sbjct: 284 TTNDADSLLAKIGEDKPEAQAAQSMEEFAKLHPLFAVLQINQYNGQLASGPVVGIADKKD 343

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            A +       ++  +  RN+    G  +I +       
Sbjct: 344 MAKIDEYLNMKQVKDLLPRNLSLKWGVKAIDEKEQFFYL 382


>gi|303236693|ref|ZP_07323274.1| export membrane protein SecD [Prevotella disiens FB035-09AN]
 gi|302483197|gb|EFL46211.1| export membrane protein SecD [Prevotella disiens FB035-09AN]
          Length = 1004

 Score =  336 bits (861), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 209/843 (24%), Positives = 380/843 (45%), Gaps = 75/843 (8%)

Query: 61  DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIAD 113
           D +  +   +    D     +R+ + + G+   ++++    + ++ +     R  E +  
Sbjct: 157 DVEKALREEVTASIDNSYNVVRNRIDQFGVVQPNIQKLEGQEGRLMVEMPGIREPERMRK 216

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +         +   + +    +T  ++ ++   +  + +     + +Q  +   +   +
Sbjct: 217 LLQGSANLEFWETYNNQEIAPYLTQLDQRLANGETSVSANDTAKTSTKQVAKA-NKPAGK 275

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS------------------FH 215
           + +    I     +   +    + +P      L     +S                   H
Sbjct: 276 LSLKGGKIGAKNENNAQMAAAKKANPLLSMLQLIPGDALSVVGYASVRDTAAINKLIYSH 335

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNGATANFDPKT 265
                      +       D    + + E           +  + G  +  A   FD   
Sbjct: 336 LAQQVLPSDLRLRWSAKPADGLQQKNVFELHALKVTTSDGRAPLEGDVITDAKDQFDQYG 395

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +P V ++ +  GAR++  +T+ N+GK +A+VLDG V T+P IN  I  G++ ISG+FTI
Sbjct: 396 -RPEVSMTMNSDGARQWAAITKANLGKAVAIVLDGLVYTSPRINSEITGGQSSISGSFTI 454

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-G 384
           E    LA  L++G +P    IV+E  VG  LG+ SI +G  +     VL++++M+++Y  
Sbjct: 455 EDTKDLANTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGLMSFAIASVLLMIYMVLMYDV 514

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             G++A+ ++  N+  TL +L+   + LT+P IAGIVL +G AVD+N+L+ ERI+EE R 
Sbjct: 515 VPGMLANVALLANLFFTLGILASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEEMRA 574

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            + +  +L  G+S A+S IFDSN T+LI  ++L   G G +RGFA T  + I+ S FTA+
Sbjct: 575 GKGIKDALQAGYSNAFSAIFDSNFTSLITGIILLVTGTGPIRGFATTWIIGIVCSFFTAV 634

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
            + R +    ++  K      +      L+ +         +       +   I  + +L
Sbjct: 635 FLTRLVYENRLKKDKWLKQKFHTSFSKNLMQNTRYKFMSMYKTTFSISIVAAIIFLVSIL 694

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ---------------------- 602
           F  GL+  IDF GG    +  N+ V +  VR  L +                        
Sbjct: 695 FVRGLSKSIDFTGGRNYVITLNKKVHVEDVRKVLGNAFVNTIGENKGKAATTNVIALGTE 754

Query: 603 -------IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                         N   E +    + Y             +   K  +I    +I ++ 
Sbjct: 755 GNTIRVSTNYNIESNDPAEDDHAETVLYTALKKGGFVSQANVESFKNPDIREGGSIISSA 814

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL- 713
            VGP +++++    ++ V ++ I + +YI +RF+   F+ G+I  L  D    +GF+++ 
Sbjct: 815 KVGPSVAKDITHGAMISVALALIFIFLYILLRFRNIGFSFGSIVALAFDTLVVVGFYSVC 874

Query: 714 -----FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                F +E + T + A+LT+IGYS+NDKVVV+DR+R+NMKL+     ++ L + SIN+T
Sbjct: 875 YGWIGFSLEIDQTFIGAILTVIGYSINDKVVVFDRIRENMKLHPKK-DYQTLFNDSINQT 933

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS +  I ++ + V GG  I SFA  M  G+     SSIFIA+P+   +   + 
Sbjct: 934 LARTINTSFSTLIVLISIFVLGGDSIRSFAFAMILGVFFGTLSSIFIASPVAYLVLGRKI 993

Query: 829 KNA 831
           +N 
Sbjct: 994 ENR 996



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 85/180 (47%), Gaps = 7/180 (3%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E+VGP +  + I++G++   I+++ ++IY+ + +     + A   L+ ++  TLG  A
Sbjct: 477 QEEVVGPTLGAQSIQQGLMSFAIASVLLMIYMVLMYDVVPGMLANVALLANLFFTLGILA 536

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F     +  +A ++  +G +V+  V++Y+R+++ M+        +D +    +      
Sbjct: 537 SFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEEMRA---GKGIKDALQAGYSNAFSAI 593

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             ++  + I+ + + V G   I  FA     GIV     S F A  +   +Y+ R K  +
Sbjct: 594 FDSNFTSLITGIILLVTGTGPIRGFATTWIIGIVC----SFFTAVFLTRLVYENRLKKDK 649



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/279 (16%), Positives = 99/279 (35%), Gaps = 38/279 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N   ++ +  ++    +     +        +                          
Sbjct: 1   MQNKGLVICVAVLLTLASIFYLSFSVATSYYDSQAAKIKDPIAQQDYKDSVKYLGIYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG +++LE+   D V+      +D   ++LK            Q+ 
Sbjct: 61  KCLETQIGLGLDLKGGMNVILEISVPDVVDVLADHKTDA--AYLKSMKEAKEQETTSQSD 118

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               F D+  K     K+         +L                      +  + + ++
Sbjct: 119 FITLFIDAFHKNAPGRKLAEVF--ATQQLKGKVTTQSSDKD---------VEKALREEVT 167

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            +I+ S  ++R RIDQ G+ +  IQ+      R+++++PG ++P R+R+LL  +A + F 
Sbjct: 168 ASIDNSYNVVRNRIDQFGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEFW 227

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           +   N     ++  +     +        D  + S   +
Sbjct: 228 ETYNNQEIAPYLTQLDQRLANGETSVSANDTAKTSTKQV 266


>gi|260593423|ref|ZP_05858881.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella veroralis F0319]
 gi|260534699|gb|EEX17316.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella veroralis F0319]
          Length = 981

 Score =  336 bits (860), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 207/842 (24%), Positives = 377/842 (44%), Gaps = 72/842 (8%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112
            D +  +   +    D     + + + + G+   ++++    + ++ +     R  E + 
Sbjct: 131 ADVEKALREEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMR 190

Query: 113 DKVTLFLQGVNSKLN----------------------VDPKKNLLVTTTEKEISIVLSQN 150
             +         +                         D          +      L+ N
Sbjct: 191 KLLQGSANLEFWETYNSQEVAPYLAQLDQRLANGDSKSDATAKDSTKAVKPNKDAKLTLN 250

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
                 +      M   +++   + + ++      S      +      ++L        
Sbjct: 251 AGKTAATSTESAQMAAAKKQHPLLSMLQTVPGEGLSLVGYANVRDTAAINKLIHSQLAKQ 310

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKPV 269
            +  +  L  ++K       + +      +    + +  + G  +  A   FD    +P 
Sbjct: 311 VLPSNLKLLWSAKSAEGLQQKNVYALHALKVTTSDGRAPLEGDVVTDAKDQFDQFG-RPQ 369

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V ++ +  GAR +  +T+ N+GK +A+VLDG V +AP ++  I  G++ ISGNFTIE   
Sbjct: 370 VSMTMNSEGAREWAALTKANVGKAIAIVLDGVVYSAPRVDGEITGGQSSISGNFTIEDTK 429

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGL 388
            LA  L++G +P    IV+E  VG  LG+ SI++G  +     VL++L+MI++Y    G+
Sbjct: 430 DLANTLKSGRMPAPAKIVQEEVVGPTLGAQSIHQGLVSFAIAFVLLMLYMILMYNFIPGM 489

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +A+ ++  N+  TL +L+   + LT+P IAGIVL +G AVD+N+L+ ERI+EE +  + +
Sbjct: 490 MANLALLANLFFTLGVLASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELKLGKGM 549

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             +L  G+S A+S IFDSN+T+LI  V+L   G G +RGFA T  + ++IS FTA+ + R
Sbjct: 550 KQALKEGYSNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTWIIGLVISFFTAVFLTR 609

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
            +    +   K  ++               +  F+        I  +  +  I      G
Sbjct: 610 IIFENRVGKDKWLNLTFTTGISKNF-MQDKSHHFLSMYKTTFAIWGIAVLVCIGSFVVRG 668

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG-----------------DISFQNF 611
           L+  IDF GG    V  N+P  +  VR  +    I                      +  
Sbjct: 669 LSRSIDFTGGRNYVVTLNKPTQVEDVRKVMTGAFINTVGENAGKPATTSVIALGTDGKTV 728

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKK------------KITEIVPLSTIQNTEIVGP 659
               N+ +       D  A+T +   +KK            K  +I    +I  +  VGP
Sbjct: 729 RISTNYNIDSNDPMEDDKAETILYNALKKGGFVSQTNVANFKNPDIREGGSIIQSAKVGP 788

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL----- 713
            I++ +     + V+++   + +YI +RF+   F++G+I  L+LD T  +G F+L     
Sbjct: 789 SIAKNITYNAFMSVLLAIFFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGCFSLCYGWI 848

Query: 714 -FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETL 769
            F +E + T + A+LT+IGY +ND VVVYDR+R+N++ +         + + + SIN+TL
Sbjct: 849 GFSLEIDQTFIGAILTVIGYDINDTVVVYDRIRENLRKHKHNLAKADIQKIFNDSINQTL 908

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ TS++  I ++ + + GG  I SF+  M  GI++   SSIFIA+P+   +   + +
Sbjct: 909 SRTINTSVSTLIVLVSIFILGGDSIRSFSFAMIIGIIIGTLSSIFIASPVAYLVLGKKIE 968

Query: 830 NA 831
             
Sbjct: 969 RR 970



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/190 (19%), Positives = 85/190 (44%), Gaps = 17/190 (8%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQNKIT 99
           + +I LGLDL+GG ++VLE+   D V+       D   +  + +      + ++    + 
Sbjct: 39  ETQIGLGLDLKGGMNVVLEISVPDVVDVLADHKQDVAYQKAMAEAKEEEMTSQKDFISLF 98

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +         +   KV    +          K  +   +++ +      +  + + ++ A
Sbjct: 99  I---------DAYHKVAPGHKLAEVFATQQLKGKVTTQSSDAD-----VEKALREEVASA 144

Query: 160 IEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           I+ S  ++  RIDQ G+ +  IQ+      R+++++PG ++P R+R+LL  +A + F + 
Sbjct: 145 IDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEFWET 204

Query: 218 LPNNSKKGFM 227
             +     ++
Sbjct: 205 YNSQEVAPYL 214


>gi|325299598|ref|YP_004259515.1| protein-export membrane protein SecD [Bacteroides salanitronis DSM
           18170]
 gi|324319151|gb|ADY37042.1| protein-export membrane protein SecD [Bacteroides salanitronis DSM
           18170]
          Length = 997

 Score =  335 bits (859), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 204/839 (24%), Positives = 375/839 (44%), Gaps = 69/839 (8%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112
            + +  +   +Q   D     LR+ + + G+   +++       +I +     +  E + 
Sbjct: 158 AEVERALREEVQAAIDNSYNVLRTRIDRFGVVQPNIQPLEGTMGRIMVELPGIKEPERVR 217

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL------------------SQNNIDQ 154
           + +         +         ++ + ++   + +                  ++    +
Sbjct: 218 NLLQGSANLEFWETYEAKDIVPVLVSADERARVAMNLTSDTVKVEETVAAAEETEAVSSK 277

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
               A+ +   +    ++   + +              +      +  +        ++ 
Sbjct: 278 DSLAAVLKGETVDNNAVNLEQLKKEHPLLAVFQPNQSGIGAIVGYADYKDTASINTVLNM 337

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIHLNGATANFDPK 264
            +V     +   +       D D   ++ E           +  + G  +  A  ++D  
Sbjct: 338 KEVKEIMPRDLKLMWGVKASDIDKTGHIFELYAIRVTERNGRAPLEGDVITDARDSYDQF 397

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
              P V +S +  G+RR+  +T+ NIGK +A+VLDG V +AP +N  I  G ++I+GNFT
Sbjct: 398 NK-PCVTMSMNTDGSRRWAALTKKNIGKEIAIVLDGYVYSAPRVNTEITGGNSEITGNFT 456

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E    LA +L++G +P    IV+E  VG  LG  SI +G  + V  L+ ++ ++ ++YG
Sbjct: 457 PEVTKDLANVLKSGKMPAPARIVQEDIVGPSLGQQSINQGLISFVVALIALMAYLCLMYG 516

Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              G+VA+ ++ LN   T+ ++S   A LTL  IAGIVL + +AVD+N+L++ER +EE +
Sbjct: 517 FIPGMVANTALVLNFFFTMGIMSSFQAALTLSGIAGIVLSLAMAVDANVLIHERTKEELK 576

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             +++  ++  G+S A+S IFDSN+T++I  V+LF+FG G +RGFA T+ + I+ S FTA
Sbjct: 577 AGKNMKEAISAGYSGAFSAIFDSNLTSIITGVILFYFGTGPIRGFATTLIIGIICSFFTA 636

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + I R +  + +   K++++  +      L        FM        I     +  I  
Sbjct: 637 VYITRLIYEYFLSKGKLRNLTFSTSLSKNL-FQNAHYNFMGITKRSFTIWGTIIVICIIS 695

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
               GL+  IDF GG    V  ++ V    +R  LE+            G     +R+  
Sbjct: 696 FAVRGLSQSIDFTGGRNFVVQFDKVVQPETIRDLLENKVEDANIQAIALGTDGHRIRVST 755

Query: 624 QPGDSVAQTRVLEMVKKKI---------------------TEIVPLSTIQNTEIVGPKIS 662
                     V   ++  +                      +     +I +++ VGP ++
Sbjct: 756 NYRIEEDGAHVDTEIEGILYEAFKEGNLLPDGLTLAQFIDRDNTEGCSIISSQKVGPSMA 815

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FG 715
            ++    +  VI + IA+ +YI IRF    F+LGA   L +D    +G ++L      F 
Sbjct: 816 DDMRTSAVWAVIFAVIAIGLYILIRFSNIAFSLGATVALAIDAFLVVGAYSLCYGWMPFS 875

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +E + T + AVLT+IGYS+NDKVV++DR+R+   LY    +   L + ++N TL R++ T
Sbjct: 876 LEVDQTFIGAVLTVIGYSINDKVVIFDRVREFTHLYPNR-NRTQLFNDALNTTLARTLNT 934

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI--YDWRAKNAR 832
             +  I +L +   GG  I SF+  M  G+V+   SS+F+AAP+           K A+
Sbjct: 935 GQSTLIVLLIIFFLGGDSIRSFSFAMILGVVIGTFSSLFVAAPVAYLALGGKKDEKEAK 993



 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 89/181 (49%), Gaps = 7/181 (3%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             +IVGP + ++ I +G++  +++ IA++ Y+ + + +   + A T L+L+   T+G  +
Sbjct: 480 QEDIVGPSLGQQSINQGLISFVVALIALMAYLCLMYGFIPGMVANTALVLNFFFTMGIMS 539

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F     L+ +A ++  +  +V+  V++++R ++ +K      + ++ I    +      
Sbjct: 540 SFQAALTLSGIAGIVLSLAMAVDANVLIHERTKEELKA---GKNMKEAISAGYSGAFSAI 596

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +++ + I+ + +  +G   I  FA  +  GI+     S F A  I   IY++     +
Sbjct: 597 FDSNLTSIITGVILFYFGTGPIRGFATTLIIGIIC----SFFTAVYITRLIYEYFLSKGK 652

Query: 833 I 833
           +
Sbjct: 653 L 653



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/365 (16%), Positives = 123/365 (33%), Gaps = 44/365 (12%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPS--------------AM---- 39
           M+N  ++ +   ++  + +     +F+ +   +     P                +    
Sbjct: 1   MQNKGFVKVFAILLTLVCVFYLSFSFVTRYHMNKAAEDPKGEAHYLDSMMNKKVWLGSYT 60

Query: 40  ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95
                +  I LGLDL+GG +++LEV   D V        DE  +    E      +   +
Sbjct: 61  LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKPDEAFNKAVAE-AAKQQVTSQE 119

Query: 96  NKITLSFADSRFKENIADKVTLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
           + ITL              V  + + V + KL        L        +    +  + +
Sbjct: 120 DFITL-------------FVREYKRLVPDGKLAELFATQQLKEKVNTRSTDAEVERALRE 166

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
            +  AI+ S  ++R RID+ G+ +  IQ       RI+++LPG ++P R+R LL  +A +
Sbjct: 167 EVQAAIDNSYNVLRTRIDRFGVVQPNIQPLEGTMGRIMVELPGIKEPERVRNLLQGSANL 226

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
            F +          +           N      KVE +        A     +   V+  
Sbjct: 227 EFWETYEAKDIVPVLVSADERARVAMNLTSDTVKVEETVAAAEETEAVSSKDSLAAVLKG 286

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
              +  A    ++ +++    +      +     ++  A     A I+    ++    + 
Sbjct: 287 ETVDNNAVNLEQLKKEHPLLAVFQP--NQSGIGAIVGYADYKDTASINTVLNMKEVKEIM 344

Query: 333 AMLRA 337
                
Sbjct: 345 PRDLK 349


>gi|198274046|ref|ZP_03206578.1| hypothetical protein BACPLE_00183 [Bacteroides plebeius DSM 17135]
 gi|198273124|gb|EDY97393.1| hypothetical protein BACPLE_00183 [Bacteroides plebeius DSM 17135]
          Length = 997

 Score =  335 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 205/838 (24%), Positives = 367/838 (43%), Gaps = 69/838 (8%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIA 112
            + +  +   +    D     LR+ + + G+   +++ ++    +I +     +  E + 
Sbjct: 158 AEVEKVLREEVSAAVDNSFNVLRTRIDRFGVAQPNIQTLEGKMGRIMVELPGIKEPERVR 217

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS--------------- 157
             +         +         ++ + +     +L+ +                      
Sbjct: 218 KLLQGSANLEFWETFEAKDIVPVLASADNRARGLLNADAPADSAMVEADTTAVAEASAVS 277

Query: 158 -----------HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                           S   I +   +  +             ++     +D + + ++L
Sbjct: 278 AKDSLAAALKGETATASNTNIEELKKEHPLLAVLQLNQSGVGCIVGYADYKDTADVNRIL 337

Query: 207 GTTAKMSFHKVLPNNS----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
              A                        R              +  + G  +     +  
Sbjct: 338 NMKAVKEVMPRDLKLMWGVKASDMDKTGRIFELYAIKSTERNGRAPLEGDVVTD-AKDEY 396

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
            + +KP V +S +  G+RR+  +T+ NIGK +A+VLDG V +AP +N  I  G +QI+GN
Sbjct: 397 DQFNKPCVSMSMNTEGSRRWAALTKKNIGKEIAIVLDGYVYSAPRVNSEITGGNSQITGN 456

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           FT E    LA +L++G +P    IV+E  VG  LG +SI +G  + +  L++++++M  +
Sbjct: 457 FTPEVTKDLANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIVSFIVALIVLMIYMCAM 516

Query: 383 YGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           YG   G+VA+ ++F+N   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE
Sbjct: 517 YGFIPGMVANGALFINFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEE 576

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  +    +L  G+  A+S IFDSN+T++I  ++LF FG G +RGFA T+ + IL S F
Sbjct: 577 LRAGKGTKQALAEGYKNAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILCSFF 636

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
           +A+ + R +    +   K  ++         L    +   FM        I  +  +  I
Sbjct: 637 SAVFLTRLVYEHFMNKDKWLNLTFTTGISKNL-MQNVHYNFMGITKRSFTIWGVIIVVCI 695

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
              F  GL   IDF GG    V   + V    VRS L+             G     +R+
Sbjct: 696 ISFFVRGLAQSIDFTGGRNFVVQFEQVVQPETVRSLLQPKVGDANVQAIALGTDGKTIRV 755

Query: 622 QYQPGDSVAQTRVLEMVKKKI---------------------TEIVPLSTIQNTEIVGPK 660
                 +     +   +++ +                      +     +I +++ VGP 
Sbjct: 756 TTNYRINEDSPTIDAEIEEFLYNALKEGNLLGEGTTLEIFIDRDNRAGGSIISSQKVGPS 815

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------ 713
           I+ ++    +  V+++ IA+ +YI IRF    F++GA   L++D    +G ++L      
Sbjct: 816 IADDIKTSAVWSVVLALIAIGLYILIRFNNIAFSIGATVALMVDTVLIIGAYSLCYGWMP 875

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F +E + T + A+LT IGYS+NDKVV++DR+R+ + LY        L + S+N TL R++
Sbjct: 876 FSLEIDQTFIGAILTAIGYSINDKVVIFDRVREFIGLYPKR-DRTQLFNDSLNTTLARTI 934

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS++  I +L + + GG  I SFA  M  G+V+   SS+F+AAP+       +    
Sbjct: 935 NTSLSTLIVLLSIFILGGDSIRSFAFAMILGVVIGTLSSLFVAAPVAYLTMGHKMPKQ 992



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 59/364 (16%), Positives = 121/364 (33%), Gaps = 40/364 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPS-----------------AM---- 39
           M+N  ++ +   ++          +F+ +  +++                     +    
Sbjct: 1   MQNKGFVKVFAVLLTLACAFYLSFSFVTRYQMNKAAEDPKGSAHYLDSMQNQKVWLGIYT 60

Query: 40  ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95
                +  I LGLDL+GG +++LEV   D V        DE  +    E      +   +
Sbjct: 61  LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKPDEAFNKAVAE-AAKLQINSQE 119

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           + ITL   +         K+    +          K  +   +T+ E+  VL +      
Sbjct: 120 DFITLFIRE-------YKKLAPEGKLAELFATQQLKDKVNTRSTDAEVEKVLREEVSA-- 170

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
              A++ S  ++R RID+ G+++  IQ       RI+++LPG ++P R+R+LL  +A + 
Sbjct: 171 ---AVDNSFNVLRTRIDRFGVAQPNIQTLEGKMGRIMVELPGIKEPERVRKLLQGSANLE 227

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           F +          +           N     D   +       A A+           + 
Sbjct: 228 FWETFEAKDIVPVLASADNRARGLLNADAPADSAMVEADTTAVAEASAVSAKDSLAAALK 287

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
            +   A              LAV+   +     ++  A     A ++    ++    +  
Sbjct: 288 GETATASNTNIEELKKEHPLLAVLQLNQSGVGCIVGYADYKDTADVNRILNMKAVKEVMP 347

Query: 334 MLRA 337
               
Sbjct: 348 RDLK 351


>gi|154491889|ref|ZP_02031515.1| hypothetical protein PARMER_01516 [Parabacteroides merdae ATCC
           43184]
 gi|154088130|gb|EDN87175.1| hypothetical protein PARMER_01516 [Parabacteroides merdae ATCC
           43184]
          Length = 1004

 Score =  335 bits (857), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 209/826 (25%), Positives = 379/826 (45%), Gaps = 67/826 (8%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQ 120
            + +   +    + LR+ + + G+   ++++     +I +     +  E +   +     
Sbjct: 168 KEELKSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227

Query: 121 GVNSKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
               +     +  + L+         +           + AIE + E++         ++
Sbjct: 228 LEFWETYNLPEIYQQLVAADNMLATILKSDDTAAVGSDTTAIEATEEVVADNAAAETTND 287

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           +            +    +      +     A +            G + G+   +D   
Sbjct: 288 ADSLLAKIGEDKPEAQAAKSMEEFAKQHPLFA-VLQINQYNGQLAPGPVVGIADKKDIAK 346

Query: 239 NQYLVE---------------------------------------DKVEISGIHLNGATA 259
               +                                            + G  +  A A
Sbjct: 347 INEYLNMKQVKDILPRNLSLKWGVKAIDEKEQYFYLYAIKMTNRDGTPALGGDVVTDANA 406

Query: 260 NFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
           +F  +    +  V ++ +  GA+ +  +T++NIGK +A+VLD  V +AP +   I  G++
Sbjct: 407 DFVQQAGRSEQQVSMTMNAEGAKAWARLTKENIGKAVAIVLDDMVYSAPNVQVEITGGRS 466

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G+FT E A  LA +L++G +   ++IV+E  VG  LG ++I  G  + V  L+L++ 
Sbjct: 467 QITGHFTPEEAKDLANVLKSGKMAASVHIVQEDVVGPSLGQEAINSGVISFVLALILLMF 526

Query: 378 FMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           +M   YG   GL+AD ++ LN+  T+ +L+   A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 527 YMCAFYGVLPGLIADGALVLNIFFTMGILASFQAVLTLPGIAGMVLTLGMAVDANVLIYE 586

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           R +EE R  +S+  ++  G+S A+S IFDSN+T++I  VVLF+FG G +RGFA TM + +
Sbjct: 587 RTKEELRAGKSLNKAIADGYSNAFSAIFDSNLTSIITGVVLFYFGTGPIRGFATTMIIGL 646

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
             S  TA+ + R +   ++   K+K++         L+     I F+ AR  G  I    
Sbjct: 647 FASFLTAVFLTRIVYEALLAKDKLKNVTFTTSITKDLL-TNPKINFLAARKVGYLIPAGI 705

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +     + T GLN GIDF GG    +   + V    VR+ L++   G +S         
Sbjct: 706 IVLGAISMSTIGLNNGIDFTGGRNYVIRFAQDVKTDEVRNLLDAQLDGSVSVIQIGTPDQ 765

Query: 617 FLVRLQYQPGDS------VAQTRVLEMVKKKITEIVP-----LSTIQNTEIVGPKISREL 665
             V   Y+  D+        + ++ E VK  + E           IQ+++ VGP ++ ++
Sbjct: 766 VRVSTNYKIEDNDPAIDQEIENKLFEGVKSLLPEGTTLAQFTDQYIQSSQKVGPSMADDI 825

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718
                + V+ +   M  YI +RF+   F++GA  ++ +     + F+ L      F +E 
Sbjct: 826 KNAAFLAVVFAMFCMAAYILLRFRDISFSVGAFASVAVTTLCIISFYTLLWKVLPFSMEV 885

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           + T +AA+LT+IGYS+ND VVV+DR+R+ + LY     +  +I+ ++N TL R+  TS+ 
Sbjct: 886 DQTFIAAILTIIGYSINDTVVVFDRIRETIGLYPKRDRY-QVINDALNSTLSRTFNTSLT 944

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             + VL + + GG+ I SF   +  GI++   S++F+A PI   + 
Sbjct: 945 TLVVVLCIFILGGATIRSFTFAILLGIIIGTYSTLFVATPIAYELQ 990



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 133/399 (33%), Gaps = 46/399 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNR-------------- 43
           M+N  ++ +   ++  + +     +F+ +   S    +    P                 
Sbjct: 1   MQNKGFVKVFAVLLTLVCMFYLSFSFVTRHYNSKAAEYAGGDPVKESSYLDSLSTQKVWL 60

Query: 44  -----------ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
                      ISLGLDL+GG ++VLE++  D +        D   +F K   +   +  
Sbjct: 61  GYTLKECREMEISLGLDLKGGMNVVLELNVADVIRSLSNNNQD--ENFNKALDLAYENQA 118

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             Q      FA+   K +   +++            + K  +   +++ ++  VL     
Sbjct: 119 TSQKDFIDLFAEEYKKLDNGARLSAIFSTF------ELKDKITPQSSDAQVIAVL----- 167

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            + +  AI+ S  ++R RID+ G+    IQR   + RIL++LPG ++P R+R+LL  +A 
Sbjct: 168 KEELKSAIDNSFNVLRTRIDRFGVVSPNIQRLETAGRILVELPGVKEPERVRKLLQGSAN 227

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F +          ++      D+     L  D     G       A  +        +
Sbjct: 228 LEFWETYNL----PEIYQQLVAADNMLATILKSDDTAAVGSDTTAIEATEEVVADNAAAE 283

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
            + D           +       ++    +      + Q          G          
Sbjct: 284 TTNDADSLLAKIGEDKPEAQAAKSMEEFAKQHPLFAVLQINQYNGQLAPGPVVGIADKKD 343

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            A +       ++  +  RN+    G  +I +       
Sbjct: 344 IAKINEYLNMKQVKDILPRNLSLKWGVKAIDEKEQYFYL 382


>gi|229543713|ref|ZP_04432773.1| protein-export membrane protein SecD [Bacillus coagulans 36D1]
 gi|229328133|gb|EEN93808.1| protein-export membrane protein SecD [Bacillus coagulans 36D1]
          Length = 727

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 185/678 (27%), Positives = 331/678 (48%), Gaps = 29/678 (4%)

Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
           +RI+ +G+SE  I   G++RI +QL G +D +  R++L TTA ++F  V       G   
Sbjct: 44  RRINALGVSEPQISVEGNNRIRVQLAGVKDQNEARKMLSTTANLTFRDVNDKVMMDGTDL 103

Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                + S                 +    +          +           + +  + 
Sbjct: 104 VQGKAKQSFDQNGKP--------DVVLQLKSRKKFADVTKKILAMAPNNQLVIWMDFQKG 155

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           +  K      + + L+ P +N  + + + +I+GNFT++ A  LA +L AG+LP+KL+ + 
Sbjct: 156 DSYKKEVAKKNPKFLSNPSVNSVLNTDQVEITGNFTVKEASNLADLLNAGALPVKLHEIY 215

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
             +VGA  G ++++    A + G+  I LFMI  Y   G +A  ++ + + L L +  L+
Sbjct: 216 STSVGASFGQEALHDTILAGIIGVAAIFLFMIGYYRFPGFIACITLSVYIFLILLIYRLM 275

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA LTLP IA +VLG+G+AVD+NI+  ERI+EE R  +SV  +   G   ++  IFDSN+
Sbjct: 276 GAVLTLPGIAALVLGVGMAVDANIITYERIKEELRVGKSVKSAFRAGNKSSFVAIFDSNL 335

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T ++A V+LF+FG  ++RGFA T+ +SIL+S  TA+   R ++   +    +K       
Sbjct: 336 TTILAAVILFYFGTSSIRGFATTLIISILLSFLTAVYGSRWLLGLWVNSNFLKKRPHWFG 395

Query: 529 SRFFLIPDCI-------------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
            +   I +                  F++ R     IS +  I    LL    LN  IDF
Sbjct: 396 VKKSAIHNIAENIDTHDLKTKFDWYDFVKHRNIFFTISAVLIIGGFILLSIFKLNLSIDF 455

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
             G ++ V +N+ +    ++ +L+ L +           ++  V           ++  +
Sbjct: 456 SSGTRIEVSSNQALSQQEIQRDLDHLHLKSEDIVMQGTNRHHAVIRVKGSFSDKEKSTQI 515

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
                +     P     +   V P + +EL    +  ++++A+ ++IY+  RF+W   + 
Sbjct: 516 NQYFTEKYGKSP-----SISSVSPTVGKELALSAVYSLLLAAVGIIIYVAFRFEWRMGVA 570

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM---KLYT 752
           +I  L  D    + FF++  +E ++T +AAVLT++GYS+ND +V +DR+R N+   +   
Sbjct: 571 SIVALFHDAFFMIAFFSITRLEVDVTFIAAVLTIVGYSINDSIVTFDRIRDNLNRRRKIK 630

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
           T+    D+++  I +TL RSV T +   ++ + +A++G   I +F+I +  G++    SS
Sbjct: 631 TAKEIHDIVNAGIRQTLARSVNTVLTVLMTSVALAIFGSESIRNFSIALIVGLITGTYSS 690

Query: 813 IFIAAPILLFIYDWRAKN 830
           IFIAA I   +   + K 
Sbjct: 691 IFIAAQIWFVLKKRQLKK 708



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 96/260 (36%), Gaps = 9/260 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           +     + + +   +        +      + + S  +        +   +   ++    
Sbjct: 140 MAPNNQLVIWMDFQKGDSYKKEVAKKNPKFLSNPSVNSVLNTDQVEITGNFTVKEASNLA 199

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +L         +        +  VG    +E +   I+  II   A+ +++   +++  
Sbjct: 200 DLLNA-----GALPVKLHEIYSTSVGASFGQEALHDTILAGIIGVAAIFLFMIGYYRFP- 253

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              A  TL + I   L  + L G    L  +AA++  +G +V+  ++ Y+R+++ +++  
Sbjct: 254 GFIACITLSVYIFLILLIYRLMGAVLTLPGIAALVLGVGMAVDANIITYERIKEELRV-- 311

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              S +         +      +++   ++ + +  +G S I  FA  +   I+++  ++
Sbjct: 312 -GKSVKSAFRAGNKSSFVAIFDSNLTTILAAVILFYFGTSSIRGFATTLIISILLSFLTA 370

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           ++ +  +L    +      R
Sbjct: 371 VYGSRWLLGLWVNSNFLKKR 390



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 35/95 (36%), Gaps = 5/95 (5%)

Query: 41  KNRISLGLDLRGGSHLVLEVDED----DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQ 95
             +I+LGLDLRGG  ++ +V+            L   +  L   +   G+    +  +  
Sbjct: 2   SKKINLGLDLRGGFEVLYKVEPAKKGQKIDKAALADTAAALDRRINALGVSEPQISVEGN 61

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
           N+I +  A  + +      ++         +N   
Sbjct: 62  NRIRVQLAGVKDQNEARKMLSTTANLTFRDVNDKV 96


>gi|317504628|ref|ZP_07962595.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella
           salivae DSM 15606]
 gi|315664249|gb|EFV03949.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella
           salivae DSM 15606]
          Length = 996

 Score =  334 bits (856), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 213/831 (25%), Positives = 381/831 (45%), Gaps = 60/831 (7%)

Query: 61  DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIAD 113
           + +  +   +Q   D     +R+ + K G+   ++++      +I +     +  E +  
Sbjct: 157 EVEKVLRQEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRK 216

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI-------------------DQ 154
            +         +     +    +   +  ++   S +                     + 
Sbjct: 217 LLQGSANLEFWETYNADEVIPYLQQLDSRLANDASNDTTAVKKAIKKADAKKVKLQLKNN 276

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
                 ++S   +     Q  +         +   L+     +D + + +L+        
Sbjct: 277 DDETPTQKSNAQMEAAKKQHPLLAMLQTTGQNSLALVGYASVRDTAAISKLIYGQTAKQI 336

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVV 270
                              ++  G   +       +  + G  +  A   F+  T +P V
Sbjct: 337 LPTDLKLLWSATPEDGIKAKNIYGLYAIKVSSSNGQAPLQGDVVVDAKDEFNHVTGQPEV 396

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
           +++ +  GARR+  +T+ N+GK +A+VLD  V +AP +N  I  G + ISGNFT+E    
Sbjct: 397 NMTMNTEGARRWAALTKANVGKAIAIVLDNAVYSAPRVNGEIDGGSSAISGNFTVEMTKD 456

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389
           LA  L++G +P    IV+E  VG  LG+ SI +G  +     VL++++M+++Y    G++
Sbjct: 457 LANTLKSGRMPAPARIVQEEVVGPTLGAASIQQGIISFAIAFVLLIIYMVLMYNFIPGMI 516

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ +NV  TL +L+   A LT+  IAG+VL +G AVD+N+L+ ERI+EE R  + + 
Sbjct: 517 ANAALIVNVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRAGKGMK 576

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++  G+S A+S IFDSN+T+LI  V+L+ FG G ++GFA T  + I+ S F+A+ + R 
Sbjct: 577 QAVAAGYSNAFSAIFDSNLTSLITGVILYVFGTGPIQGFATTWIIGIVCSFFSAVFLTRL 636

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +    +   +  ++         L       +FM        I+IL ++  I   F  GL
Sbjct: 637 VFEHQLNKDRWMNLKYWTSVSKNL-MQNKDYKFMSMYKGTFTIAILAAVVFIGSFFVRGL 695

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           +  IDF GG    V   +P +   VR  L  +  G  +     G  N  +R+        
Sbjct: 696 SQSIDFTGGRNYVVQFEKPTEPEQVREVLTHVFPGCTTNALSLGTDNRTIRISTNYKIES 755

Query: 630 AQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKG 669
               V +  + K+                     ++    +I ++  VGP +++++    
Sbjct: 756 NSPTVDDEAESKLYQGLKQAGLVSQKSVQAFKNPDVRTGGSIISSSKVGPSVAKDVTYGA 815

Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG------IEFNLTA 722
           I+ VII+ +A+ +YI IRF+   F+ G+   LI D    +GFF+L        +E + T 
Sbjct: 816 IISVIIALVAIFLYILIRFRNVAFSAGSTIALIFDALTVVGFFSLLQGLLPFSLEVDQTF 875

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + AVLT+IGYS+NDKVVV+DR+R+N +L+      + + + SIN+TL R++ T  +  I 
Sbjct: 876 IGAVLTVIGYSINDKVVVFDRIRENFRLHPK-QDVQKVFNDSINQTLARTINTGFSTLIV 934

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++ + + GG  I  FA  M  G+V    SSIFIA+PI         K+ R+
Sbjct: 935 LVVILLLGGKSIQPFAFAMTLGVVFGTLSSIFIASPIAYLFMGKTIKDRRL 985



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 94/265 (35%), Gaps = 38/265 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N   ++    ++    +     +        +                          
Sbjct: 1   MQNKGIVICTAVLLTLASIFYLSFSVATGYYDSQAAKIKDPIARQDYKDSVKYLGIYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG +++LE+   D +       +D   +F+K            Q+ 
Sbjct: 61  KCLETQIGLGLDLKGGMNVILEISVPDVLETLADHKTDP--AFVKSMKQARTEEETSQSD 118

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               F     +     ++                   L      + +    +  + Q + 
Sbjct: 119 FISLFVKYYHQNAPGHRLAELFAT-----------QQLQGKINPQSTDSEVEKVLRQEVQ 167

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++R RID+ G+ +  IQ+    + RI++++PG ++P R+R+LL  +A + F 
Sbjct: 168 AAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRKLLQGSANLEFW 227

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQ 240
           +    +    ++  +     +D + 
Sbjct: 228 ETYNADEVIPYLQQLDSRLANDASN 252


>gi|288803464|ref|ZP_06408896.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella melaninogenica D18]
 gi|288334074|gb|EFC72517.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella melaninogenica D18]
          Length = 1006

 Score =  334 bits (855), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 202/836 (24%), Positives = 369/836 (44%), Gaps = 69/836 (8%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + + + + + G+   ++++    + ++ +     R  E +   +     
Sbjct: 164 EEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSAN 223

Query: 121 GVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
               +   N +    L                           ++    +  +++    +
Sbjct: 224 LEFWETYNNQEITPYLTQLDQRLANGETKVDTAATDSTKKVQAKAAATPKFALNKNNAVK 283

Query: 179 STIQRLGSHRILIQ-----------------LPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
               ++ + + +                       +D + + +++  +            
Sbjct: 284 GEDAQMAALKKMHPLLSMLQTIPGDALSLVGYANVRDTAAINKMIYGSLAKQILPSDLKL 343

Query: 222 SKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                       ++  G   L     + +  + G  +  A  +FD    +P V ++ +  
Sbjct: 344 LWSAKPEDGLNKKNVYGLYALKITTSDGRARLEGDVVTTAKDDFDEHG-RPRVSMTMNSE 402

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
           GAR +  +T+ N+GK +A+VLDG V +AP ++  I  G++ ISGNFTIE    LA  L++
Sbjct: 403 GAREWAALTKANVGKAIAIVLDGVVYSAPRVDGEIAGGQSSISGNFTIEDTKDLANTLKS 462

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFL 396
           G +P    IV+E  VG  LG+ SI +G  +     VL++L+MIV+Y    G++A+ ++  
Sbjct: 463 GRMPAPAKIVQEEVVGPTLGAQSIEQGLISFAIAFVLLMLYMIVMYNFIPGMMANLALIA 522

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N+  TL +L+   + LT+P IAGIVL +G AVD+N+L+ ERI+EE +  + +  +L+ G+
Sbjct: 523 NLFFTLGVLASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELKLGKGMKQALNEGY 582

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
             A+S IFDSN+T+LI  V+L   G G +RGFA T  + I+IS FTA+ + R +    + 
Sbjct: 583 GNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTWIIGIVISFFTAVFLTRLVFENRVS 642

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
             K  +                   F+        I  +  +  I      GL+  IDF 
Sbjct: 643 KDKWLNQTFTTGFSKNF-MQGKNYHFLSMYKTTFTIWGVAVLVCIVSFAVRGLSRSIDFT 701

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQ-----------------------------IGDIS 607
           GG    V  N+P  +  VR  ++                                     
Sbjct: 702 GGRNYVVTLNKPTHVEDVRKVMQGAFVNTVGENAGKPATTTVIALGTDGKTVRVSTNYNI 761

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
             N   E +    + Y             +   K  +I    +I  +  VGP I++ +  
Sbjct: 762 DSNNPAEDDKAETILYNALKKGGFVSQASVQNFKNPDIREGGSIIQSAKVGPSIAKSITY 821

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNL 720
             I+ V+++   + +YI +RF+   F++G+I  L+LD T  +G F+L      F +E + 
Sbjct: 822 NAIMSVLLAIFFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGCFSLCYGWIGFSLEIDQ 881

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSM 777
           T + A+LT+IGY +ND VVVYDR+R+N+  +         + + + SIN+TL R++ TS+
Sbjct: 882 TFIGAILTVIGYDINDTVVVYDRIRENLGKHKHNLAKADIQKIFNDSINQTLSRTINTSV 941

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF-IYDWRAKNAR 832
           +  I ++ + + GG  I SF+  M  GI++   SSIFIA+P+    +     K+++
Sbjct: 942 STLIVLVSIFILGGDSIRSFSFAMIIGIIIGTLSSIFIASPVAYLVLGKKIEKHSK 997



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 90/266 (33%), Gaps = 38/266 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N   ++ +  ++    +     +        +                          
Sbjct: 1   MQNKGLVICVAILLTLASIFYLSFSVATSYYDGQAAKIKDPIAQQDYKDSVKYLGLYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG ++VLE+   D V+       D      K               
Sbjct: 61  KCLETQIGLGLDLKGGMNVVLEISVPDVVDFLADHKQDAAYQ--KALETAKQEEMHSPKD 118

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               F D+  K+    K+         +L                      +  + + ++
Sbjct: 119 FISLFVDAFHKDAPGHKLAEIF--ATQQLKGKVSTQSTDEE---------VEKALREEVA 167

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++  RIDQ G+ +  IQ+      R+++++PG ++P R+R+LL  +A + F 
Sbjct: 168 SAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEFW 227

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   N     ++  +     +   + 
Sbjct: 228 ETYNNQEITPYLTQLDQRLANGETKV 253


>gi|281421495|ref|ZP_06252494.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella copri DSM 18205]
 gi|281404567|gb|EFB35247.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella copri DSM 18205]
          Length = 1005

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 211/832 (25%), Positives = 376/832 (45%), Gaps = 71/832 (8%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122
           V   +    + +R+ + K G+   ++++    Q +I +        E +   +       
Sbjct: 166 VQDAIDNSFNVVRTRIDKFGVVQPNIQKLEGQQGRIMVEMPGISQPERMRKMLQGSANLE 225

Query: 123 NSKLNVDPK-----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +     +     + L       +     + +          E +    ++   +  I 
Sbjct: 226 FWETYNSEEIAPYLQQLDTRIANGDNGEEKTDSVAADSTVAKKEVAKAEPKKAEAKFSIK 285

Query: 178 ESTIQRLGSHRILIQ-----------------------LPGEQDPSRLRQLLGTTAKMSF 214
           +                                         +D + + +++ +      
Sbjct: 286 KKDDAASKVGEDAQNAAAIKAHPLLARLQLGGGLSTVGYASVRDTAAINKIIYSAVAKRV 345

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDG----NQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
                              ++              +  + G  +  A   FD     PVV
Sbjct: 346 LPSDLRLLWSAKPADNLKAKNIFELHALKVTTTTGRAPLEGDVITDAKDEFDQMG-SPVV 404

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +  +  GAR++ ++T+ N+GK +A+VLDG V +AP +N  I  G +QISGNFTIE    
Sbjct: 405 SMKMNTEGARKWAQMTKANVGKAIAIVLDGVVYSAPRVNGEIDGGSSQISGNFTIEDTKD 464

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389
           LA  L++G +P    IV+E  VG  LG+ SI  G  + V   VL++++M+++Y    G++
Sbjct: 465 LANTLKSGRMPAPARIVQEEVVGPTLGAQSIQMGIVSFVVAFVLLMVYMVMMYNIIPGMM 524

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ +NV  TL +L+   A LTLP +AG+VL +G AVD+N+L+ ERI+EE R  + + 
Sbjct: 525 ANLALLVNVFFTLGILTSFQAALTLPGLAGMVLSLGTAVDANVLIYERIKEELRSGKGMK 584

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++  G+  A+S IFDSN+T+LI  V+L   G G +RGFA T  + I++S FTA+ + R 
Sbjct: 585 QAVAAGYGNAFSAIFDSNLTSLITGVILLTTGTGPIRGFATTWIIGIVVSFFTAVFLTRL 644

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +  + + + K              +      +FM        ++I+ ++  I   F  GL
Sbjct: 645 VYDYKLNHDKWMH-CKFDTPVSHNLMQGKKYKFMSMYKTTFTVAIVAAVVFIGSFFVRGL 703

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG-------------EKN 616
           +  IDF GG    V    PV+   +R+ L    +     +   G               N
Sbjct: 704 SKSIDFTGGRNYVVQFENPVEPEQIRTVLGDAFVNADGTKANTGAIAIGTDGKTIRVSTN 763

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKI------------TEIVPLSTIQNTEIVGPKISRE 664
           +++       D  A+T +   +KK               ++    +I ++  VGP ++++
Sbjct: 764 YMIESNSPTVDDEAETILYNALKKANLVSQKSVEAFKNPDVRQGGSIISSTKVGPSVAKD 823

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717
           +    I  V+ + IA+ +YI +RF+   F++G+   L  D    +GF++L      F +E
Sbjct: 824 ITMGAIYSVLFALIAIFLYILVRFRNVAFSVGSTIALAFDALTVIGFYSLLWGLVPFSLE 883

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + T + A+LT++GYS+NDKVVV+DR+R+N+KL+      + L + SINETL R++ TS 
Sbjct: 884 IDQTFIGAILTVVGYSINDKVVVFDRIRENLKLHPKG-DRQQLFNASINETLARTINTST 942

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +  + +L + + GG  I SF+  M  G+V    SSIFIA+P+   +   + K
Sbjct: 943 STLLVLLCIFILGGDSIRSFSFAMILGVVFGTLSSIFIASPMAYIVLGRKIK 994



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 59/367 (16%), Positives = 115/367 (31%), Gaps = 38/367 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N   ++ +  ++    +     +F  +                               
Sbjct: 1   MQNKGIVICVAVLLTLASIFYLSFSFATRYYDSEAAKIKDPIAQQDYKDSVKYLGVYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG +++LE+   D +       +D    F                 
Sbjct: 61  NCLETQIGLGLDLKGGMNVILEISVPDVLENLADHKTDA--GFTNAMKEARAQEEANGGD 118

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               F ++  K                KL        L      + S    +  I   + 
Sbjct: 119 FVSLFINAYHK-----------SAPGHKLAEVFATQQLQGKVSPQSSDAEVEKAIRASVQ 167

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++R RID+ G+ +  IQ+      RI++++PG   P R+R++L  +A + F 
Sbjct: 168 DAIDNSFNVVRTRIDKFGVVQPNIQKLEGQQGRIMVEMPGISQPERMRKMLQGSANLEFW 227

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
           +   +     ++  +     +  N     D V           A  +PK  +    I   
Sbjct: 228 ETYNSEEIAPYLQQLDTRIANGDNGEEKTDSVAADSTVAKKEVAKAEPKKAEAKFSIKKK 287

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
           +  A +  E  ++        +L    L   +      S +   + N  I +A     + 
Sbjct: 288 DDAASKVGEDAQNAAAIKAHPLLARLQLGGGLSTVGYASVRDTAAINKIIYSAVAKRVLP 347

Query: 336 RAGSLPI 342
               L  
Sbjct: 348 SDLRLLW 354


>gi|196232267|ref|ZP_03131121.1| protein-export membrane protein SecD [Chthoniobacter flavus
           Ellin428]
 gi|196223635|gb|EDY18151.1| protein-export membrane protein SecD [Chthoniobacter flavus
           Ellin428]
          Length = 801

 Score =  332 bits (850), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 212/701 (30%), Positives = 358/701 (51%), Gaps = 39/701 (5%)

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGTTA 210
             +    ++Q+ME IR+R+DQ G+SE  I   G+ RIL+Q+PG      +  R+ L   A
Sbjct: 95  KDITKDMVDQAMEAIRKRVDQFGVSEPIITPQGTDRILVQIPGLDQGQIADAREQLKKVA 154

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY----------------LVEDKVEISGIHL 254
           K+ FH V P +                G                   L+++  ++ G  +
Sbjct: 155 KLEFHLVNPQSQALAQAIEAGVQPTPHGYTLVDTSMERNGKPVEGKLLIKNTADLLGSDV 214

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV-------VLDGRVLTAPV 307
             A A +     +  V + F+  GA +F ++T     +   +       V     +    
Sbjct: 215 THAYAYY---DGQWGVALEFNSKGADQFAKLTAQVAREHSQMAILLDGKVQSAPTVDEKY 271

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
               I  G+AQISG    E      A      L   + I EER+  + LG D+I  G  A
Sbjct: 272 ATAGIVGGRAQISGGSMSEKEARNLASALQNPLQTPVQIEEERSASSTLGQDAINSGITA 331

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + GLVL+++F+++ Y   GLVA   + +N+I+    +++ G  LTLP IAG++L IGLA
Sbjct: 332 GIGGLVLVLIFVVIYYRFAGLVAVVGLVINIIVLFGAMAMFGFVLTLPGIAGVILTIGLA 391

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ER+REE    +++  S++  + +A++ IFD+N T LI   +LF+   G V+G
Sbjct: 392 VDANVLIYERLREEMAAGKTLASSINAAYDKAFTVIFDANATTLITAAILFWQASGPVKG 451

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
           FA+T+ + I+ S+F+A+ + R +  + ++   +K I +  L           + FM  RF
Sbjct: 452 FAVTLVVGIIASVFSAMVVTRMLFSWALKIGFLKRITMLHLISGQ------GVDFMSRRF 505

Query: 548 WGVGISILF-SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
             +GIS+    +  I        N GIDFKGG  L + + +PV+++ +R ++E L+I D+
Sbjct: 506 LWIGISVTVAVVSMIGFAVRFPNNLGIDFKGGDLLMLKSVKPVEVADIRKHIEELKIEDV 565

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           + Q      +    +  +   S   T        K T      +    + VG  +  EL 
Sbjct: 566 AIQKETDPSSHSEFIAIR---SPIDTGDKIEAHLKETMPDTGFSEHKKDKVGKIVGGELA 622

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           +  ++ + +  + + +Y+ +RF+  FA+GA+  L+ D+  T+G F++FG E +L  V A+
Sbjct: 623 KSSLIALGLGMLGIFLYVTMRFEASFAVGALVALLHDVIITVGLFSIFGRELSLIMVGAI 682

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           LT+ GYS+ND +VVYDR+R+ +       S + +++ SINETL R++ TS    +SV  +
Sbjct: 683 LTIAGYSINDTIVVYDRIREGLHSGRRG-SIQSIMNASINETLSRTLLTSGCTLLSVAAL 741

Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++GG V+  FA  +  GIVV   SSIFIA+PI+L+    +
Sbjct: 742 YIFGGPVLHDFAFAILIGIVVGTYSSIFIASPIVLWWSGHK 782


>gi|325955438|ref|YP_004239098.1| protein-export membrane protein SecD [Weeksella virosa DSM 16922]
 gi|323438056|gb|ADX68520.1| protein-export membrane protein SecD [Weeksella virosa DSM 16922]
          Length = 964

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 196/824 (23%), Positives = 365/824 (44%), Gaps = 64/824 (7%)

Query: 55  HLVLEVDEDDF-------VNGFLQMYSDELRSFLKKEGIGVFSMRQ----IQNKITLSFA 103
           H+     ++         +   +      + S + + G+    +++       +I +   
Sbjct: 158 HVSYNASDEQVKAFIKKDIETKVATAYQVISSRIDQFGVVEPVVQRLGSEGDGRILVELP 217

Query: 104 DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
                + +   +    +    ++  D +  + +        I  ++ NI +         
Sbjct: 218 GVSDTDRVKKLLQSTAKLEFWQVVEDQQAIMAL------AGIGTAKYNISRDGRIVSNLG 271

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
             ++ +  + + +       + +  +  +      P+ +R          F         
Sbjct: 272 EVLMPRMSNALTVVNLKDTAVVNRVLQDKEFKTLLPANVRNYK-------FAWASKPLDT 324

Query: 224 KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
                 V  L    G     E  +    +       N    T++PVV +  ++ GA+ + 
Sbjct: 325 GVGGPKVLELFALKGKNGQNEPLIGGDKVVSASGERNAGSVTNEPVVSMQMNQEGAQEWA 384

Query: 284 EVTRDNIGKPLAVV-------LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            +T +                LD  V +AP I   I  G +QI+GNFT+E A  LA +L+
Sbjct: 385 RITDELKPNQQFPRGQAVAIVLDNMVYSAPSIRGQITGGNSQITGNFTLEEAKDLANILQ 444

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AGSLP    IV    VG  LG ++I     A      L++++MI  Y + GL A+ ++ +
Sbjct: 445 AGSLPASSKIVSAEVVGPSLGQEAINSSLIAFAVAFSLVLVWMIFYYSRAGLYANVALIV 504

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM-- 454
           N++  + +L  L ATL+LP IAGI+L +   +D+NI++ ER++EE RK +S+  ++D   
Sbjct: 505 NLLFLMGMLVSLRATLSLPGIAGIILTLVTGMDANIIIYERVKEELRKGRSLRQAVDFAY 564

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            +  A+S IFD+N T+LI  ++LF FG G V GFA T  + I  S FTA+ I R  +   
Sbjct: 565 SWKGAFSAIFDANTTSLITAIILFIFGKGPVVGFATTFIIGIFTSTFTALFITRYFVE-- 622

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
               +                  I +  ++ +     +SIL +I ++  +FT G + GI+
Sbjct: 623 -SRLEKGKSVAFFTPFTAHWLQNIRVDLLKTKKISYAVSILLTISALVSIFTQGFDLGIE 681

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGD-----ISFQNFDGEKNFLVRLQYQPGDSV 629
           FKGG    V  ++ VD + +  +L ++ + D        + + G     +   Y+  +  
Sbjct: 682 FKGGRTYTVRFDKTVDPTKIAESLGNVFVLDGEKMIPQVKTYGGNNQVKITTAYKADEDG 741

Query: 630 AQTRVL---------------EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            +                    +  K  +E      + ++  VGP I+ +  R  I+ V 
Sbjct: 742 TEIDNEIKDKLYNGLQSYLPANLSVKDFSEDNASIGLMSSAKVGPTIADDTTRASILAVS 801

Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVL 727
           ++ +A+ +Y+ I+F +W F+   I  L  D+   LG F+L      F +E +   +AA+L
Sbjct: 802 LALVAIFVYLIIQFKRWQFSAATILALAHDVIIVLGVFSLLKGVLPFNMEIDQAFIAAIL 861

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
           T+IGYS+ND +++ DR+R+N+ +   + +  D+I+ S +ETL R++ TS++ F+ VL + 
Sbjct: 862 TVIGYSMNDSIIILDRIRENLSV-EKNRNLYDIINISTSETLSRTINTSLSTFLIVLIIF 920

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++GG  I  F      G+V+   SSIF+A+P++         N 
Sbjct: 921 IFGGESIKGFMFAKLIGVVIGTFSSIFVASPLVYDFTKKGKMNK 964



 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 95/252 (37%), Gaps = 10/252 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +      +    R    ++ + ++ +                 G+   +         + 
Sbjct: 386 ITDELKPNQQFPRGQAVAIVLDNMVYSAPSIRGQITGGNSQITGNFTLEEAKDLANILQA 445

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +   S I + E+VGP + +E I   ++   ++   +L+++   +     L A   LI+
Sbjct: 446 GSLPASSKIVSAEVVGPSLGQEAINSSLIAFAVAFSLVLVWMIFYYS-RAGLYANVALIV 504

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           ++   +G         +L  +A ++  +   ++  +++Y+R+++ ++      S R  +D
Sbjct: 505 NLLFLMGMLVSLRATLSLPGIAGIILTLVTGMDANIIIYERVKEELR---KGRSLRQAVD 561

Query: 763 KSIN--ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            + +           +  + I+ + + ++G   +  FA     GI     +S F A  I 
Sbjct: 562 FAYSWKGAFSAIFDANTTSLITAIILFIFGKGPVVGFATTFIIGI----FTSTFTALFIT 617

Query: 821 LFIYDWRAKNAR 832
            +  + R +  +
Sbjct: 618 RYFVESRLEKGK 629



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 21/277 (7%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
                I+LGLDL+GG +++L+V E D +        + +   L          +   N  
Sbjct: 69  AKNKEINLGLDLKGGINVILQVSERDLLVNLAGNKENPML--LTALDNTDRQQKTQGNVP 126

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN----IDQ 154
            +            D        +                    +S   S       I +
Sbjct: 127 YV------------DLFFQEFDKIRGGTKYASPDLFGTKANSAHVSYNASDEQVKAFIKK 174

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            I   +  + ++I  RIDQ G+ E  +QR    G  RIL++LPG  D  R+++LL +TAK
Sbjct: 175 DIETKVATAYQVISSRIDQFGVVEPVVQRLGSEGDGRILVELPGVSDTDRVKKLLQSTAK 234

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F +V+ +      + G+   + +      +   +    +                VV+
Sbjct: 235 LEFWQVVEDQQAIMALAGIGTAKYNISRDGRIVSNLGEVLMPRMSNALTVVNLKDTAVVN 294

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
               +   +        N     A       +  P +
Sbjct: 295 RVLQDKEFKTLLPANVRNYKFAWASKPLDTGVGGPKV 331


>gi|302346016|ref|YP_003814369.1| export membrane protein SecD [Prevotella melaninogenica ATCC 25845]
 gi|302149968|gb|ADK96230.1| export membrane protein SecD [Prevotella melaninogenica ATCC 25845]
          Length = 1006

 Score =  331 bits (848), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 199/834 (23%), Positives = 367/834 (44%), Gaps = 68/834 (8%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + + + + + G+   ++++    + ++ +     R  E +   +     
Sbjct: 164 EEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSAN 223

Query: 121 GVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
               +   N +    L+                          ++    +  +++   ++
Sbjct: 224 LEFWETYNNQEITPYLVQLDQRLANGETKVDTAATDSTKKVQAKAAATPKFALNKGNAAK 283

Query: 179 STIQRLGSHRILIQ-----------------LPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
               ++ + + +                       +D + + +++               
Sbjct: 284 GEDAQMAALKKMHPLLSMLQTIPGDALSLVGYASVRDTAAINKMIYGQLAKQILPSDLKL 343

Query: 222 SKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                       ++  G   L     + +  + G  +  A  +F+    +P V ++ +  
Sbjct: 344 LWSAKPEDGLNKKNVYGLYALKITTSDGRAPLEGDVVTDAKDDFNQHG-RPQVSMTMNSE 402

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
           GAR +  +T+ N+GK +A+VLDG V +AP ++  I  G++ ISGNFTIE    LA  L++
Sbjct: 403 GAREWAALTKANVGKAIAIVLDGVVYSAPRVDGEISGGQSSISGNFTIEDTKDLANTLKS 462

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFL 396
           G +P    IV+E  VG  LG+ SI +G  +     VL++L+MIV+Y    G++A+ ++  
Sbjct: 463 GRMPAPAKIVQEEVVGPTLGAQSIEQGLISFAIAFVLLMLYMIVMYNFIPGMMANLALIA 522

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N+  TL +L+   + LT+P IAGIVL +G AVD+N+L+ ERI+EE +  + +  +L  G+
Sbjct: 523 NLFFTLGVLASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELKLGKGMKQALSEGY 582

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
             A+S IFDSN+T+LI  V+L   G G +RGFA T  + I+IS FTA+ + R +    + 
Sbjct: 583 GNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTWIIGIVISFFTAVFLTRLVFENRVS 642

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
             K  +                   F+        +  +  +  I      GL+  IDF 
Sbjct: 643 KDKWLNQTFTTGFSKNF-MQGKNYHFLSMYKTTFTVWGVAVLVCIVSFAVRGLSRSIDFT 701

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQ-----------------------------IGDIS 607
           GG    V  N+P  +  VR  ++                                     
Sbjct: 702 GGRNYVVTLNKPTHVEDVRKVMQGAFVNTVGENAGKPATTTVIALGTDGKTVRVSTNYNI 761

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
             N   E +    + Y             +   K  +I    +I  +  VGP I++ +  
Sbjct: 762 DSNNPAEDDKAETILYNALKKGGFVSQASVQNFKNPDIREGGSIIQSAKVGPSIAKSITY 821

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNL 720
             I+ V+++   + +YI +RF+   F++G+I  L+LD T  +G F+L      F +E + 
Sbjct: 822 NAIMSVLLAIFFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGCFSLCYGWIGFSLEIDQ 881

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSM 777
           T + A+LT+IGY +ND VVVYDR+R+N+  +         + + + SIN+TL R++ TS+
Sbjct: 882 TFIGAILTVIGYDINDTVVVYDRIRENLGKHKHNLAKADIQKIFNDSINQTLSRTINTSV 941

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  I ++ + + GG  I SF+  M  GI++   SSIFIA+P+   +   + +  
Sbjct: 942 STLIVLVSIFILGGESIRSFSFAMIIGIIIGTLSSIFIASPVAYLVLGKKIEKR 995



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 93/271 (34%), Gaps = 48/271 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N   ++ +  ++    +     +        +                          
Sbjct: 1   MQNKGLVICVAILLTLASIFYLSFSVATSYYDGQAAKIKDPIAQQDYKDSVKYLGLYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG ++VLE+   D V+       D                      
Sbjct: 61  KCLETQIGLGLDLKGGMNVVLEISVPDVVDFLADHKQDAAYQK----------------- 103

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLN-----VDPKKNLLVTTTEKEISIVLSQNNI 152
             L  A      +  D ++LF+   +                L      + +    +  +
Sbjct: 104 -ALETAKQEEMHSPKDFISLFVDAFHKVAPGHKLAEIFATQQLKGKVSTQSTDEEVEKAL 162

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTA 210
            + ++ AI+ S  ++  RIDQ G+ +  IQ+      R+++++PG ++P R+R+LL  +A
Sbjct: 163 REEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSA 222

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
            + F +   N     ++  +     +   + 
Sbjct: 223 NLEFWETYNNQEITPYLVQLDQRLANGETKV 253


>gi|281358636|ref|ZP_06245114.1| protein-export membrane protein SecD [Victivallis vadensis ATCC
           BAA-548]
 gi|281314866|gb|EFA98901.1| protein-export membrane protein SecD [Victivallis vadensis ATCC
           BAA-548]
          Length = 867

 Score =  331 bits (847), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 214/799 (26%), Positives = 368/799 (46%), Gaps = 59/799 (7%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
            + I LGLDL GG   +L++  D     FL    ++     +        MR   ++   
Sbjct: 106 SSSIRLGLDLNGGVEFILQLVPD---QEFLSKLKEDSGKGGEGRADLEKRMRAEFDRY-- 160

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
                  ++   + +   L+G                 +      + +           +
Sbjct: 161 -------RDIAIEILRKRLEGQKIFEAEIAP-------SGSNYVALRAPVVAKDEKVKLL 206

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
                                    S ++  +L    + + ++Q L      +       
Sbjct: 207 NL--------------------IKMSAKLRFRLVHPDNAALVQQYLANPENFTVPLGYEL 246

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                F  G     +     Y VE++ ++ G  +         +  +  + + F+  GA 
Sbjct: 247 MKTSEFRAGQAPRVEY----YFVENRAQMDGKGV-SHAQAAKDEFGQRKIQLRFNTEGAE 301

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
           +F  VT +N+G+ LA+VLDG +  AP I QAI  G A+ISG+F+ E A  ++  L +GS 
Sbjct: 302 QFGRVTSENVGRQLAIVLDGHLYCAPAIRQAILGGNAEISGSFSDEEAKSISDALVSGSF 361

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P ++ +    +    LG+ ++  G  A V  +VL+ +FMIV Y   G+V+  ++ LN++L
Sbjct: 362 PFQIKVDAVFDTDPKLGASNVANGIWAGVISMVLVAVFMIVYYRLAGVVSVVALALNIVL 421

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
            L  ++    TLTLP IAGIVL IG+AVD+N+LV ER+REE    +S+  S+D+G+SRA+
Sbjct: 422 ILGAMAAFNCTLTLPGIAGIVLTIGMAVDANVLVYERVREELATGKSLRSSIDLGYSRAF 481

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           S + D+N+T LI +V+L + G GA++GFA+T+ + IL ++FTA+ + R    +I RY K+
Sbjct: 482 SAVLDANLTTLITSVILMYVGTGAIKGFAVTLSIGILTTLFTALFVTRLGFDYIFRYTKI 541

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGI 579
             I                  F R     V +S+   + ++ LL   G +  G+DF GG 
Sbjct: 542 DHI------HMMQFFKNTNFNFDRMWSKTVMVSLALILLAVVLLCVKGRDVLGVDFTGGT 595

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG-------EKNFLVRLQYQPGDSVAQT 632
            +       +    +   L++           +        +   L+R       + +  
Sbjct: 596 AVSFNYEAQIPQDEMEKVLKAAGYDATVTYKANAAAASENRKVEVLIRGDLTGRSATSSP 655

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           +                +      VG  I  E  +  ++ + +S + + +Y+ +R+++ +
Sbjct: 656 KDQLAAVLNKAFPDAKLSGGLESSVGGLIGWEFTKAALIAIALSMVGIAVYVSLRYEFVY 715

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           AL ++  L  D+   LG + L G   +LT VAA+LT+IGYS+NDKVVV+DR+R+N+ L  
Sbjct: 716 ALSSLIALGHDLLVVLGIYLLLGRTISLTVVAALLTVIGYSMNDKVVVFDRIRENVHLGV 775

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              ++ D ++ SIN+TL R++ TS+  FI V  + + GG  I  F + M  GIVV   SS
Sbjct: 776 CK-NYVDTVNLSINQTLNRTILTSLTTFIVVFVLFLGGGVAINDFVLVMMLGIVVGTYSS 834

Query: 813 IFIAAPILLFIYDWRAKNA 831
           IFIAAP++   +    +  
Sbjct: 835 IFIAAPLVSMWHRRAEQRR 853


>gi|307566176|ref|ZP_07628631.1| protein-export membrane protein SecDF [Prevotella amnii CRIS 21A-A]
 gi|307345141|gb|EFN90523.1| protein-export membrane protein SecDF [Prevotella amnii CRIS 21A-A]
          Length = 1008

 Score =  330 bits (846), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 204/838 (24%), Positives = 388/838 (46%), Gaps = 71/838 (8%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + +R+ + + G+   ++++    + ++ +     R  E +   +     
Sbjct: 164 EEVKSAIDNSYNVVRNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRRLLQGSAN 223

Query: 121 GVNSKLNVDPK-----KNLLVTTTEKEISIVLSQNNIDQVISHAI--------------- 160
               +   + +     + L             ++    ++ S ++               
Sbjct: 224 LEFWETYNNQEIAPYLQQLDQRLANASTKADTTKAGSAKIGSASVKKLSLNAAKKAFGKV 283

Query: 161 ------EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
                 +   E+++++   +   +       S      +      +RL         +  
Sbjct: 284 VDNGKNDAGAELLKKQHPLLSRLQMVPGEALSLVGYCNVRDTAAVNRLIHSHIAKQVLPA 343

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           +  L  ++K      V+ + +    +    + +  + G  +  A   FD     P V +S
Sbjct: 344 NLKLLWSAKPADHIQVKNMYELHALKVTTSDGRAPLEGDVITDAKDQFDQYGK-PEVSMS 402

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
            +  GA  +  +T+ N+GK +A+VLDG V T+P IN  I  G++ I+G+FT+     L+ 
Sbjct: 403 MNSEGAHEWAALTKANVGKAIAIVLDGVVYTSPRINGEIDGGQSSITGSFTVADTKDLSN 462

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADF 392
            L++G +P    IV+E  VG  LG+ SI +G  +     VL++ ++I +YG   G++A+ 
Sbjct: 463 TLKSGRMPAPAKIVQEEVVGPTLGAQSIQQGLISFAIAFVLLMFYIIAMYGFIPGMLANL 522

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++ +N+  TL +L+   + LT+P IAGIVL +G AVD+N+L+ ERI+EE R  +S+  +L
Sbjct: 523 ALLVNLFFTLGILASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELRLGKSMKQAL 582

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
             G+  A+S IFDSN+T+LI  ++L   G G +RGFA T+ + ++IS FTA+ + R +  
Sbjct: 583 HEGYKNAFSAIFDSNLTSLITGIILLVTGTGPIRGFATTLIIGLIISFFTAVFLTRLVFE 642

Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG 572
             +   K + +  +      +        FM+       + I+ +I  I   +  GL+ G
Sbjct: 643 NRVNNDKWRHLTFSTGISRNMFRKSTY-SFMKMHKKSFTVWIIAAIICIVSFYVRGLSRG 701

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIG---------------------------- 604
           I+F GG    +  ++PV +  +R    +  +                             
Sbjct: 702 IEFTGGRNYVITLSKPVQVEDIRKVFNNAFVNTDGVNKGKVANTSVIAIGTDGKTIRVST 761

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           + +  +   + +    + Y             + K K  +I    +I  +  VGP I++ 
Sbjct: 762 NWNIDSRANDDDLAETILYNTLKKYNYVTQSSVAKFKNPDIREGGSIIQSSKVGPSIAKN 821

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIE 717
           +     V V ++ + + +YI +RF+   F++G+I  L+LD T  +G F+L      F +E
Sbjct: 822 ITFNAFVSVGLAIVFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGIFSLCHGWIGFSLE 881

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVY 774
            + T + A+LT+IGY +ND VVV+DR+R+NM  + +       + L ++SINETL R++ 
Sbjct: 882 IDQTFIGAILTVIGYDINDTVVVFDRIRENMAKHKSTLAKYGIQKLFNESINETLSRTIN 941

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           TS++  I ++ + + GG    SF+  M  GIV+   SSIFIA+PI   +   +  N++
Sbjct: 942 TSVSTLIVLVAIFILGGDSTRSFSFAMIIGIVIGTLSSIFIASPIAYLVMGHKIDNSK 999



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 92/270 (34%), Gaps = 38/270 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N   ++ +  ++    +     +        +                          
Sbjct: 1   MQNKGLVICVAVLLTLASIFYLSFSVATSYYDSQAAKIKDPIARQDYKDSVKYLGIYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG ++VLE+   D V+      +D   +++K            Q  
Sbjct: 61  KCLETQIGLGLDLKGGMNVVLEISVPDVVDMLADHKTDA--AYVKSLNEAKAEEASGQGD 118

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               F  +  K     K+         +L                         + + + 
Sbjct: 119 FIPLFVKAYQKNAPGHKLAEVF--ATQQLKGKVSTQSTDKE---------VIEALREEVK 167

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++R RIDQ G+ +  IQ+      R+++++PG ++P R+R+LL  +A + F 
Sbjct: 168 SAIDNSYNVVRNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRRLLQGSANLEFW 227

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
           +   N     ++  +     +   +     
Sbjct: 228 ETYNNQEIAPYLQQLDQRLANASTKADTTK 257


>gi|261213891|ref|ZP_05928172.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 3 str. Tulya]
 gi|260915498|gb|EEX82359.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 3 str. Tulya]
          Length = 785

 Score =  330 bits (846), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L+ +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 57  RETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763



 Score = 98.6 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L+  P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|82699761|ref|YP_414335.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis biovar Abortus 2308]
 gi|260754641|ref|ZP_05866989.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 6 str. 870]
 gi|260757864|ref|ZP_05870212.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 4 str. 292]
 gi|260761687|ref|ZP_05874030.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260883667|ref|ZP_05895281.1| protein-export membrane protein secD [Brucella abortus bv. 9 str.
           C68]
 gi|297248241|ref|ZP_06931959.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella
           abortus bv. 5 str. B3196]
 gi|82615862|emb|CAJ10866.1| Vacuolar H+-transporting two-sector ATPase, C
           subunit:Rhodopsin-like GPCR superfamily:Regulator of
           chromosome condensation, R [Brucella melitensis biovar
           Abortus 2308]
 gi|260668182|gb|EEX55122.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 4 str. 292]
 gi|260672119|gb|EEX58940.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|260674749|gb|EEX61570.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 6 str. 870]
 gi|260873195|gb|EEX80264.1| protein-export membrane protein secD [Brucella abortus bv. 9 str.
           C68]
 gi|297175410|gb|EFH34757.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella
           abortus bv. 5 str. B3196]
          Length = 785

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L+ +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 57  RETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+++  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIVILTAVLSLI 351

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763



 Score = 98.6 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L+  P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|332881399|ref|ZP_08449049.1| export membrane protein SecD [Capnocytophaga sp. oral taxon 329 str.
            F0087]
 gi|332680775|gb|EGJ53722.1| export membrane protein SecD [Capnocytophaga sp. oral taxon 329 str.
            F0087]
          Length = 1015

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 207/841 (24%), Positives = 376/841 (44%), Gaps = 78/841 (9%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122
            V   +    + LR+ + + G+   +++       +I +     +  E +   +       
Sbjct: 173  VQSAIDNSYNVLRTRIDRFGVVQPNIQTLEGQMGRIMVEMPGVKEPERVRKLLQGSANLE 232

Query: 123  NSKLNVDPK----------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
              +     +                  +    T K  +  +++    + +          
Sbjct: 233  FWETYNTEEIIPFLATLDTRLAAEHAAIAENDTAKADTTAMAELTPAEKVDATDSTKKAP 292

Query: 167  IRQRIDQIGISEST-----------------------IQRLGSHRILIQLPGEQDPSRLR 203
            ++     +  +  T                           G    ++     +D + + 
Sbjct: 293  VKDLAAALKGNSGTPAEKAGAAVDEQAMKNHPLASVLQFAQGPMGCVVGYASWRDTATVN 352

Query: 204  QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATA 259
            + + +                    G   + D              +  + G  +     
Sbjct: 353  RYITSAVAKEVLPSDLKLYWGVKPVGSGNMGDIFELYAIKITERNGRAPLEGDVVTE-AK 411

Query: 260  NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
            +   +  +P V ++ +  GARR+  +T+ N+ + +A+VLDG V +AP +   I  G + I
Sbjct: 412  DDYEQNGRPCVSMTMNSDGARRWAALTKKNVKRAIAIVLDGYVYSAPTVQNEITGGVSSI 471

Query: 320  SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
            +G+FT+E    LA +L  G +P   +IV E+ VG  LG +SI +G  + V   +L++++M
Sbjct: 472  TGHFTLEDTRDLANVLNTGKMPAPAHIVSEQFVGPTLGQESINQGITSFVIAFILLMIYM 531

Query: 380  IVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438
              +YG   G+VA+ ++ LN   TL +L+   A LT+  IAG+VL +G+AVD+N+L+ ER 
Sbjct: 532  CGMYGLIPGMVANGALILNFFFTLGVLTSFQAALTMSGIAGMVLSLGMAVDANVLIYERT 591

Query: 439  REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
            +EE R  ++V  +L  G+S A+S IFDSN+T++I  ++L+ FG G +RGFA T+ + IL+
Sbjct: 592  KEELRAGKTVRAALSDGYSNAFSAIFDSNLTSIITGIILYNFGTGPIRGFATTLIIGILV 651

Query: 499  SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
            S FTA+ + R +    +  +K  ++          + D    +FM +      I  +  +
Sbjct: 652  SFFTAVYLTRIVYEHFLNKEKWMNLTFTTSLSRKFLHD-THYKFMSSYKKSFTIFGVLLV 710

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I  LF  GL+ GIDF GG    V+  + V+   VR+ L++            G  +  
Sbjct: 711  VGIASLFVRGLSKGIDFTGGRNFVVVFEKQVEPETVRTLLQNKFGDANIQVIALGTDHQT 770

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKI---------------------TEIVPLSTIQNTEIV 657
            VR+          T V   ++  +                      +     +I ++E V
Sbjct: 771  VRISTNYRIDEEGTEVDSEIEATLFETLKGGGLLSSDLDLQTFINRDERAGGSIISSEKV 830

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL--- 713
            GP ++ ++    IV V+++ IA+ +YI +RF+   F++GA+  L +D    +G +++   
Sbjct: 831  GPSVAEDITYGAIVSVVLALIAIFLYILLRFRNVAFSVGAVVALTVDTLLIIGAYSICWG 890

Query: 714  ---FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               F +E + T + A+LT IGYS+NDKVVV+DR+R+ + LY      + L + S+N TL 
Sbjct: 891  WVPFSLEIDQTFIGAILTAIGYSINDKVVVFDRIREFLHLYPNR-DRQRLFNDSLNTTLT 949

Query: 771  RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            R++ TS+   + +L +   GG  I SFA  M  G+V+   SSIF+AAP+       R K 
Sbjct: 950  RTINTSLTTLVVLLCIFFLGGESIRSFAFAMILGVVIGTCSSIFMAAPVAFLTMGQRIKE 1009

Query: 831  A 831
             
Sbjct: 1010 N 1010



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 39/183 (21%), Positives = 84/183 (45%), Gaps = 7/183 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I + + VGP + +E I +GI   +I+ I ++IY+   +     + A   LIL+   TLG
Sbjct: 497 HIVSEQFVGPTLGQESINQGITSFVIAFILLMIYMCGMYGLIPGMVANGALILNFFFTLG 556

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               F     ++ +A ++  +G +V+  V++Y+R ++ ++      + R  +    +   
Sbjct: 557 VLTSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELRA---GKTVRAALSDGYSNAF 613

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +++ + I+ + +  +G   I  FA  +  GI+V    S F A  +   +Y+    
Sbjct: 614 SAIFDSNLTSIITGIILYNFGTGPIRGFATTLIIGILV----SFFTAVYLTRIVYEHFLN 669

Query: 830 NAR 832
             +
Sbjct: 670 KEK 672



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 92/251 (36%), Gaps = 45/251 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSA 38
           M+N  ++ +   ++  + +     +F+                          +   P  
Sbjct: 1   MQNKGFVKVFALLLTLVCVFYLSFSFVTTYQMNKVDEITKTQGEEAGAHYLDSVMNNPVW 60

Query: 39  M--------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90
           +         +  ISLGLDL+GG +++LEV   + V        D   +          +
Sbjct: 61  LGAYSLKDCREMEISLGLDLKGGMNVILEVSVPEVVKALADHKEDPAFNK-AVAKAAEGA 119

Query: 91  MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
                + ITL   +          +               K  +   +++ E+  VL   
Sbjct: 120 KNSQSDFITLFVKE-------YKALAPDGNLAELFATQQLKGKVTTKSSDSEVEKVLRAE 172

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208
                +  AI+ S  ++R RID+ G+ +  IQ       RI++++PG ++P R+R+LL  
Sbjct: 173 -----VQSAIDNSYNVLRTRIDRFGVVQPNIQTLEGQMGRIMVEMPGVKEPERVRKLLQG 227

Query: 209 TAKMSFHKVLP 219
           +A + F +   
Sbjct: 228 SANLEFWETYN 238


>gi|300725856|ref|ZP_07059320.1| putative protein-export membrane protein SecD [Prevotella bryantii
           B14]
 gi|299776844|gb|EFI73390.1| putative protein-export membrane protein SecD [Prevotella bryantii
           B14]
          Length = 1014

 Score =  330 bits (845), Expect = 6e-88,   Method: Composition-based stats.
 Identities = 215/844 (25%), Positives = 392/844 (46%), Gaps = 78/844 (9%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIA 112
           V+ ++ +   +Q   D     +R+ + K G+   ++++    Q +I +     R  E + 
Sbjct: 156 VEVENAIRSEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQQGRIMVEMPGIREPERMR 215

Query: 113 DKVT--------------------LFLQGVNSKLNVDPKKNLLVTTTEKEISIV------ 146
             +                       +    +             + +    +       
Sbjct: 216 KLLQGSANLEFWETYNAEEIIPYLNQVDQRFANGGETATDTTAKDSAKSTAPVTKKAEPK 275

Query: 147 --LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
             L+      V   +    +E  +++   + + ++T Q   +      +      +++  
Sbjct: 276 FKLAGAAKKDVAPKSETAQIEAAKKQHPLLAVLQTTGQNSLALVGYANVRDTAAINKIIN 335

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDP 263
                  +     L  ++K   +  V+ + +    +      +  + G  +  A   FD 
Sbjct: 336 SQIAKQILPSDVRLLWSAKPANLQNVKNIYELYALKVTTSTGRAPLEGDVITDAKDEFDQ 395

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
            +  PVV +  +  GAR++ ++T+ N GK +A+VLDG V +AP +NQ I  G +QISGNF
Sbjct: 396 FS-NPVVSMQMNTEGARKWAQLTKANQGKAVAIVLDGVVYSAPRVNQEIDGGNSQISGNF 454

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           TIE    L+  L++G +P   +IV+E  VG  LG+ SI +G  +     VL++++M+++Y
Sbjct: 455 TIEETKDLSNTLKSGRMPAPAHIVQEDVVGPTLGAQSIQQGLISFAVAFVLLMVYMVLMY 514

Query: 384 -GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
               G+VA+ ++  N+  TL +L+   + LT+P IAG+VL +G AVD+N+L+ ERI+EE 
Sbjct: 515 DFIPGMVANGALIANLFFTLGVLASFQSALTMPGIAGMVLTLGTAVDANVLIYERIKEEM 574

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R  + +  +L+ G+  A+S IFDSN+T+LI  ++L   G G +RGFA T  + I++S FT
Sbjct: 575 RMGKGLREALEAGYKNAFSAIFDSNLTSLITGIILLTTGTGPIRGFATTWIIGIVVSFFT 634

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A+ + R +    ++  K  ++          +    +  FM        +  +     + 
Sbjct: 635 AVFLTRLVYENRVKSGKWLNLKF-YTGFSKSMMQGSSYNFMGMYKKSFTVWGVAIFICVI 693

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG-----------------D 605
                GL+  IDF GG    V  ++ V++  VR  L    +                   
Sbjct: 694 SFAVRGLSQSIDFTGGRNYVVALDKTVEVEDVREVLGDAFVNTVGPDAGKTATTSVIALG 753

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK------------KITEIVPLSTIQN 653
              +      N+ +       D  A+T +   +KK            K  +I    +I +
Sbjct: 754 TDGKTIRVSTNYNIDSTDPLEDDKAETILFNALKKGNFVSQANVESFKNPDIREGGSIIS 813

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
           +  VGP +++++    IV V+++ I + +YI +RF+   F+ GA   LILD T  +GFF+
Sbjct: 814 SAKVGPSVAKDITYGAIVSVVLAIIFIFLYILLRFRNIGFSAGATAGLILDTTIVIGFFS 873

Query: 713 L------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI---SFRDLIDK 763
           L      F +E + T + A+LT+IGY +ND VVV+DR+R+N+      +     + L + 
Sbjct: 874 LCYGWIGFSLEIDQTFIGAILTVIGYDINDSVVVFDRIRENLNNNKNRMSRVDIQALFNN 933

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           SINETL R++ TS++  I ++ + + GG  I SFA  M  G+++   SSIFIA+P+   +
Sbjct: 934 SINETLSRTINTSISTLIVLVSIFILGGDSIRSFAFAMIIGVIIGTLSSIFIASPVAYLV 993

Query: 824 YDWR 827
              +
Sbjct: 994 LGKK 997



 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 38/183 (20%), Positives = 89/183 (48%), Gaps = 7/183 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I   ++VGP +  + I++G++   ++ + +++Y+ + + +   + A   LI ++  TLG
Sbjct: 476 HIVQEDVVGPTLGAQSIQQGLISFAVAFVLLMVYMVLMYDFIPGMVANGALIANLFFTLG 535

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             A F     +  +A ++  +G +V+  V++Y+R+++ M++       R+ ++       
Sbjct: 536 VLASFQSALTMPGIAGMVLTLGTAVDANVLIYERIKEEMRM---GKGLREALEAGYKNAF 592

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +++ + I+ + +   G   I  FA     GIVV    S F A  +   +Y+ R K
Sbjct: 593 SAIFDSNLTSLITGIILLTTGTGPIRGFATTWIIGIVV----SFFTAVFLTRLVYENRVK 648

Query: 830 NAR 832
           + +
Sbjct: 649 SGK 651



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/273 (16%), Positives = 92/273 (33%), Gaps = 38/273 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N   +++   ++    +     +                                   
Sbjct: 1   MQNKGIVIVTAVLLTLASIFYLSFSVATSYFDSEAAKIKDPIAQQDYKDSVKYLGVYSYK 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG +++LE+   D +       +D   +  K            Q  
Sbjct: 61  NCLETQIGLGLDLKGGMNVILEISVPDVIETLADHKTDAAFT--KAMKDAKAEHMNSQGD 118

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               F D+  +     K+         +  V P+ + +                I   + 
Sbjct: 119 FIKLFIDAYHRVAPGHKLAEVFATQQMQGKVSPQSSDVEVEN-----------AIRSEVQ 167

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++R RID+ G+ +  IQ+      RI++++PG ++P R+R+LL  +A + F 
Sbjct: 168 AAIDNSFNVVRTRIDKFGVVQPNIQKLEGQQGRIMVEMPGIREPERMRKLLQGSANLEFW 227

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           +         ++  V     + G         +
Sbjct: 228 ETYNAEEIIPYLNQVDQRFANGGETATDTTAKD 260


>gi|261324998|ref|ZP_05964195.1| protein-export membrane protein secD [Brucella neotomae 5K33]
 gi|261300978|gb|EEY04475.1| protein-export membrane protein secD [Brucella neotomae 5K33]
          Length = 785

 Score =  330 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 240/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 57  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA++ L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 352 GASIRLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I +LIY+W RF+W  ALGA+ + + D+   
Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGILIYVWFRFRWQLALGAVLSTLHDVVIL 645

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 646 SGLFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763



 Score = 98.6 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|320334657|ref|YP_004171368.1| protein-export membrane protein SecD [Deinococcus maricopensis DSM
           21211]
 gi|319755946|gb|ADV67703.1| protein-export membrane protein SecD [Deinococcus maricopensis DSM
           21211]
          Length = 762

 Score =  330 bits (844), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 208/683 (30%), Positives = 364/683 (53%), Gaps = 18/683 (2%)

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGTTAK 211
                 +++   II  RI+ +G++E T+   G  R+++++PG  +    R R ++   AK
Sbjct: 86  TTDRDTLDRIKTIIENRINALGVAEPTVTVQGGKRVVVEIPGATEAVQERTRSIINQQAK 145

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F  V                    G +       E +G  +  A A  DP++ + VV+
Sbjct: 146 LEFRIVNQGAQPDAQEASKNPASG--GYKLSDLGPAEATGEVIASAAAGADPQSGRWVVN 203

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
            +    GA +F E TR N+ + +A+VLD ++ +   INQA      QISG+FT E A  L
Sbjct: 204 FTTTPKGADQFGEFTRKNVNRLMAIVLDDQIKSVATINQA-LYSNIQISGSFTTEEASQL 262

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVA 390
           A +L++GSLP+K+ +  E+ +G  LG+D+I  G  A + G+ L+ + +   YG  +GLV 
Sbjct: 263 ALVLKSGSLPVKIKVEAEQAIGPTLGADAIRSGAIAALVGIGLVFVMLFFYYGLWFGLVG 322

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
              +  + ++ L +L   GATLTLP IAG+VL IG AVD N++  ERI+EE ++ + +  
Sbjct: 323 ALGLLFSSVIILGILGGFGATLTLPGIAGLVLTIGAAVDGNVISFERIKEELQRGKGIKN 382

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           S++ G+  +  TI D N++ L++ + L+ +  G V+GFA+T+ + ++ S+F+ +   + M
Sbjct: 383 SINAGYDHSLWTIVDVNLSHLLSALALYNYATGPVKGFALTLAIGVVASVFSNLVFAKWM 442

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           M  +   ++                    I F++A      +S+L +I  I  L   GLN
Sbjct: 443 MRALASRREF---------GAPRRVGVPNIDFIKASPIITTLSVLLAIGGIAALAVKGLN 493

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           YG+DF  G  + V A     +  VR  L    +     +    +++          +   
Sbjct: 494 YGVDFTSGTNITVKAAPSTQVEDVRRALGDANLNVAHAEGATIQRSVTPGTNAAVFNVKV 553

Query: 631 QTRVLEMVKKKITEIV--PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                  V++   +    P +++Q+ E VGP +  EL  K I  V++    +L+Y+  RF
Sbjct: 554 PELNTAQVEQLRAQFTKLPQASVQSVETVGPAVGGELRDKTIRAVLLGLALILVYVGFRF 613

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   LG+I  ++ D+   +G +AL G+EFN+  VAAVLTLIGYS+ND ++V DR+R+N+
Sbjct: 614 DFIMGLGSILAVLHDVAIVMGLYALLGLEFNIATVAAVLTLIGYSLNDSIIVSDRIRENL 673

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           KL     S+RD+++ SIN+TL R+V TS++  + ++ + ++GG+V+  F++ +  GI++ 
Sbjct: 674 KLM-RGRSYRDIVNASINQTLSRTVMTSVSTMLPLVSLLIFGGAVLRDFSLALLVGILIG 732

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             SSI+I AP+++ + +W     
Sbjct: 733 TYSSIYIVAPMVVVLENWLKNRR 755



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/206 (9%), Positives = 54/206 (26%), Gaps = 5/206 (2%)

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSF 102
           I+LGLDL+GG  + L  +        L      + + +   G+   ++      ++ +  
Sbjct: 66  INLGLDLKGGLRIELAPENGTTDRDTLDRIKTIIENRINALGVAEPTVTVQGGKRVVVEI 125

Query: 103 ADSRFK--ENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +     E     +    +     +N   + +    +          + +         
Sbjct: 126 PGATEAVQERTRSIINQQAKLEFRIVNQGAQPDAQEASKNPAS--GGYKLSDLGPAEATG 183

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
           E           Q G                     ++ +RL  ++      S   +   
Sbjct: 184 EVIASAAAGADPQSGRWVVNFTTTPKGADQFGEFTRKNVNRLMAIVLDDQIKSVATINQA 243

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDK 246
                 + G     ++     +++  
Sbjct: 244 LYSNIQISGSFTTEEASQLALVLKSG 269


>gi|23501777|ref|NP_697904.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           suis 1330]
 gi|256369319|ref|YP_003106827.1| protein-export membrane protein, SecD/SecF family [Brucella microti
           CCM 4915]
 gi|261218752|ref|ZP_05933033.1| export membrane protein secD [Brucella ceti M13/05/1]
 gi|261317542|ref|ZP_05956739.1| export membrane protein secD [Brucella pinnipedialis B2/94]
 gi|261321749|ref|ZP_05960946.1| export membrane protein secD [Brucella ceti M644/93/1]
 gi|265988576|ref|ZP_06101133.1| protein-export membrane protein secD [Brucella pinnipedialis
           M292/94/1]
 gi|23347707|gb|AAN29819.1| protein-export membrane protein, SecD/SecF family [Brucella suis
           1330]
 gi|255999479|gb|ACU47878.1| protein-export membrane protein, SecD/SecF family [Brucella microti
           CCM 4915]
 gi|260923841|gb|EEX90409.1| export membrane protein secD [Brucella ceti M13/05/1]
 gi|261294439|gb|EEX97935.1| export membrane protein secD [Brucella ceti M644/93/1]
 gi|261296765|gb|EEY00262.1| export membrane protein secD [Brucella pinnipedialis B2/94]
 gi|264660773|gb|EEZ31034.1| protein-export membrane protein secD [Brucella pinnipedialis
           M292/94/1]
          Length = 785

 Score =  330 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 57  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763



 Score = 98.2 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|261752209|ref|ZP_05995918.1| protein-export membrane protein secD [Brucella suis bv. 5 str. 513]
 gi|261741962|gb|EEY29888.1| protein-export membrane protein secD [Brucella suis bv. 5 str. 513]
          Length = 785

 Score =  330 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 57  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTILGNLSFRAMDDTMSPDDAIRGTPPADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763



 Score = 97.1 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTILGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|311031518|ref|ZP_07709608.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus sp.
           m3-13]
          Length = 749

 Score =  330 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 192/696 (27%), Positives = 328/696 (47%), Gaps = 28/696 (4%)

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
            +V    +  ++  + +R++ +G+SE  IQ  G  RI +QL G +D S+ R+LL T AK+
Sbjct: 55  SEVDRDLLVSTVSALNKRVNVLGVSEPNIQIEGDDRIRVQLAGVEDQSKARELLSTEAKL 114

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
           SF  V       G          S          + +                      +
Sbjct: 115 SFRDVDDKLLMDGSALAEGGASQSFDQNNAPSVALTLRSASEFADITRQVRDMGVGRNLM 174

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                          +   +      D + L+A  + Q +     QI+GNF+IE+A  LA
Sbjct: 175 VIWLDFEEGVDSYEAEAGKE------DPKYLSAAQVTQVLNETNVQITGNFSIESAKELA 228

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
            +L+AGSLP++L  +   +VGA  G  ++ K   A + G+  I++FM+V Y   GLVA  
Sbjct: 229 ELLKAGSLPVELEEIYSTSVGAKFGETALQKTVLAGIIGISAILIFMLVYYRLPGLVAVI 288

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++   + L L +  L+   LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +S   + 
Sbjct: 289 TLSTYIFLILLVFELMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKLGRSAMSAF 348

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
             G   ++STI D+N+T L+A  V+F +G  +V+GFA  + +SIL+S  TA+   R ++ 
Sbjct: 349 RAGSRNSFSTILDANLTTLLAAGVMFVYGTSSVKGFATMLIVSILLSFITAVFGSRLLLG 408

Query: 513 FIIRYKKMKSIDI-------------NPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
             +  + M +                                FM+ R     +S    + 
Sbjct: 409 LWVNSRFMNNKPHLFGVKKEDILDINMTDENTEPPNRFDNWDFMKHRKKFFMLSGALIVV 468

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
            I +L    LN GIDF  G ++ +L+   +    +   L S+ +          +    V
Sbjct: 469 GIIVLAVFRLNLGIDFASGTRVEILSETSLTAEEITEELASIGLEPKDVVLAGNDNEIAV 528

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                         V E V+ K           +   V P + +EL R     ++I+A+ 
Sbjct: 529 ARYVDDFSQTEIAEVKEYVQNKYGSE------PSVSTVSPTVGQELARNAFFAILIAAVG 582

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ++IY+ IRF+W FAL AI  L  D    + FF+L  +E ++T +AA+LT++GYS+ND +V
Sbjct: 583 IIIYVTIRFEWMFALAAIVALFHDAFFIVAFFSLTRLEVDITFIAALLTIVGYSINDTIV 642

Query: 740 VYDRMRKNMKLYTTSISF---RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
            +DR+R+N+K      ++    ++++KS+ +T  RS+ T     I+VL + ++G   I +
Sbjct: 643 TFDRIRENLKKKKRVKTYEDLEEIVNKSLQQTFVRSLNTVGTVVIAVLALLIFGSESITN 702

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           F+I +  G++V   SS+FIAA + +     +    +
Sbjct: 703 FSIALLVGLIVGTYSSLFIAAQLWMKWKYKQISRPK 738



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 77/735 (10%), Positives = 185/735 (25%), Gaps = 44/735 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +     +I     +    N + +              I LGLDL+GG  ++ EV 
Sbjct: 3   KRGRIVAFFLLLILIGSTIGVFTNPITKD-------------IKLGLDLQGGFEVLYEVK 49

Query: 62  E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116
                 +     L      L   +   G+   +++ +  ++I +  A    +    + ++
Sbjct: 50  PINENSEVDRDLLVSTVSALNKRVNVLGVSEPNIQIEGDDRIRVQLAGVEDQSKARELLS 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
              +     ++     +               QNN   V       S      R  +   
Sbjct: 110 TEAKLSFRDVDDKLLMDGSALAEGGASQ-SFDQNNAPSVALTLRSASEFADITRQVRDMG 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
               +  +           E +  +      + A+++       N +    F +   ++ 
Sbjct: 169 VGRNLMVIWLDFEEGVDSYEAEAGKEDPKYLSAAQVTQVL-NETNVQITGNFSIESAKEL 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT-------RDN 289
                     VE+  I+     A F     +  V      + A   F +           
Sbjct: 228 AELLKAGSLPVELEEIYSTSVGAKFGETALQKTVLAGIIGISAILIFMLVYYRLPGLVAV 287

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           I     + L   V         +P   A I G      A I+        L +  + +  
Sbjct: 288 ITLSTYIFLILLVFELMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKLGRSAMSA 347

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTL 402
              G+     +I       +    ++ ++       +  +   SI L+ I       L L
Sbjct: 348 FRAGSRNSFSTILDANLTTLLAAGVMFVYGTSSVKGFATMLIVSILLSFITAVFGSRLLL 407

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            L          P + G+     L ++      E     +  +           S A   
Sbjct: 408 GLWVNSRFMNNKPHLFGVKKEDILDINMTDENTEPPNRFDNWDFMKHRKKFFMLSGALIV 467

Query: 463 IFDSNITAL-IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           +    +    +   + F  G         ++    +     +I +    ++      ++ 
Sbjct: 468 VGIIVLAVFRLNLGIDFASGTRVEILSETSLTAEEITEELASIGLEPKDVVLAGNDNEIA 527

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                       I +       +        ++  ++                    I +
Sbjct: 528 VARYVDDFSQTEIAEVKEYVQNKYGSEPSVSTVSPTVGQELARNAFFAILIAAVGIIIYV 587

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +       L+ + +           F     E +             +    +    + 
Sbjct: 588 TIRFEWMFALAAIVALFHDAFFIVAFFSLTRLEVDITFIAALLTIVGYSINDTIVTFDRI 647

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIWI------RFKWYF 692
              +     ++  E +   +++ L +  +     V    IA+L  +         F    
Sbjct: 648 RENLKKKKRVKTYEDLEEIVNKSLQQTFVRSLNTVGTVVIAVLALLIFGSESITNFSIAL 707

Query: 693 ALGAITTLILDITKT 707
            +G I      +   
Sbjct: 708 LVGLIVGTYSSLFIA 722


>gi|148560432|ref|YP_001258870.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           ovis ATCC 25840]
 gi|148371689|gb|ABQ61668.1| protein-export membrane protein, SecD/SecF family [Brucella ovis
           ATCC 25840]
          Length = 785

 Score =  330 bits (844), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +            +E +  I+RQR++++G
Sbjct: 57  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTD-----LETTTNIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763



 Score = 98.2 bits (242), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLETTTNIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|332828462|gb|EGK01167.1| hypothetical protein HMPREF9455_00207 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 989

 Score =  330 bits (844), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 188/793 (23%), Positives = 364/793 (45%), Gaps = 31/793 (3%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGV 122
           +        + LR+ + + G+   +++++ N+   I +     +  + +   +       
Sbjct: 193 LQSVADNSFNVLRTRIDRFGVVAPNIQKLDNRAERIMIELPGIKEPDRVRKLLQGSANLE 252

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             K     +    ++   +     L+  N+      A+  S+++                
Sbjct: 253 FWKTYNLNEIQGYISALTERSREALAAQNVTDTT--AVSDSLKVQEVGNLGFTKPFIENF 310

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
             G    ++ +  + D + +  +L          +      K        +         
Sbjct: 311 ISGGMGAIVGIVHKNDTAAVNAILRRFQDAYPPDLRFAWGFKAEDIRETQITLYALRGDG 370

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++    + G  +  A A+         V +  + +G +R+  +T    G+ +A+VLDG V
Sbjct: 371 LKKGPALDGDVVISAKADQSQHGATWEVSMQMNSVGTQRWATITGAEKGRSIAIVLDGSV 430

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            +AP +N  I  G++QI+GNFT E A  L  +L++G +   ++IV+E  VG  LG ++I 
Sbjct: 431 YSAPNVNDKIEGGQSQITGNFTPEDAKDLENVLKSGKMKAGVHIVQEDIVGPSLGQEAIK 490

Query: 363 KGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            G  + V  LVL++ ++ ++YG   GL+A+ ++ +N+  T+ +L+  GA +TLP I G+V
Sbjct: 491 AGVISFVLALVLLMAYICLVYGFIPGLIANSAVLVNLFFTIGILAAFGAVMTLPGITGLV 550

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + LAVD+N+LV ER +EE R  ++   ++  G+  A+S IFD + + +I  ++L +FG
Sbjct: 551 LSLALAVDANVLVYERTKEELRAGKNTKVAVVDGYKHAFSAIFDGHASQVITAIILAYFG 610

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
            G ++GFA T+ + I+ S  T + + R    +++     ++          L      I 
Sbjct: 611 TGPIQGFATTLIIGIVASFITNVFLTRIFYEYMLDKGHFRNQTFTTAISRKL-FVDTKIN 669

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
           F+      V +S +  +  +  LF +GLN GIDF GG    V  ++ V+   +   L   
Sbjct: 670 FLGMTKKIVILSAVLLVAGVGSLFINGLNGGIDFTGGRNYLVRFDKNVNADAIEKVLVPE 729

Query: 602 QIGDISFQNFDGEK---------NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP----- 647
             G        G                 + +      +  +   +   +T         
Sbjct: 730 FEGSTVLVLTSGSASQSSTTSQVRITTNYKIEEATDEVEDEIRAKMTHALTAAGFLTDGK 789

Query: 648 --LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
                +Q+++ VGP ++ +L     + V+I+ + M +YI +RF+   F+LG +  +  D 
Sbjct: 790 TIDDFVQSSQRVGPSVADDLKTAATIAVLIAVVCMALYILLRFRDIAFSLGTLIAVAHDA 849

Query: 705 TKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
              +  ++L      F +E + + +AAVLT++GYS+NDKVV++DR+R+   +Y    +  
Sbjct: 850 VMVIFLYSLLYKIMPFSMEIDQSFIAAVLTVVGYSINDKVVIFDRIREIRNMYPKR-NIT 908

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           + I++++N TLGR++ TS++  + V  + + GG  I SF   +  GIV+   SS+F+A P
Sbjct: 909 ETINEALNSTLGRTLNTSISTMLVVFCIFLLGGDTIRSFTFAIFIGIVIGTYSSVFVATP 968

Query: 819 ILLFIYDWRAKNA 831
           I   I+    K  
Sbjct: 969 IAWGIFKKEGKKK 981



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/213 (22%), Positives = 90/213 (42%), Gaps = 16/213 (7%)

Query: 40  PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT 99
            +  I LGLDL+GG  +++EVD    +   L    +E  +            ++  N+  
Sbjct: 91  REKEIGLGLDLKGGMSVIVEVDAAAVLRS-LGDPENEAFNT--ALTEASAENKKGSNRDY 147

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           ++    +FK    +     L GV S      +  +     + ++      + +   +   
Sbjct: 148 ITLFVDKFKAANGND---KLAGVFS---TKLRDQVGPQDKDDKVI-----SALRTELQSV 196

Query: 160 IEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            + S  ++R RID+ G+    IQ+    + RI+I+LPG ++P R+R+LL  +A + F K 
Sbjct: 197 ADNSFNVLRTRIDRFGVVAPNIQKLDNRAERIMIELPGIKEPDRVRKLLQGSANLEFWKT 256

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
              N  +G++  +            V D   +S
Sbjct: 257 YNLNEIQGYISALTERSREALAAQNVTDTTAVS 289


>gi|89100788|ref|ZP_01173641.1| preprotein translocase subunits D and F [Bacillus sp. NRRL B-14911]
 gi|89084491|gb|EAR63639.1| preprotein translocase subunits D and F [Bacillus sp. NRRL B-14911]
          Length = 753

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 190/696 (27%), Positives = 338/696 (48%), Gaps = 29/696 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
             +     +  + E + +R++ +G++E  IQ  G +R+ +QL G +D ++ R++L T A 
Sbjct: 53  GKKATKEVLNSTAEALDRRVNALGVNEPIIQIEGDNRVRVQLAGVKDQNQAREMLSTEAN 112

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           +SF  V           G   +       +    K  +S   L   +A    +  + +V+
Sbjct: 113 LSFRDVNDREMMN----GSDLVEGGAKQTFDENGKPSVS---LTLKSAEKFKEVTQEIVN 165

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +         + +    +  K  +   D + L+AP ++Q        I GNF++E A  L
Sbjct: 166 MGAPNNLLVIWLDYEEGDSFKEESQKEDPKYLSAPQVSQVFNQDTVSIVGNFSLEEAKTL 225

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L+AG+LP++L      +VGA  G D++ K     + G+++I LFMI  Y   G +A 
Sbjct: 226 SSLLKAGALPVELTEEYSTSVGAKFGEDAMQKTITGGIIGILVIFLFMIAFYRFPGFIAT 285

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + + L L +   +   LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +SV  +
Sbjct: 286 ITLSIYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKVGKSVKSA 345

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G   + STI D+NIT ++A VVLF +G  +V+GFA  + LSIL S  TA+   R ++
Sbjct: 346 FQAGNKNSLSTILDANITTILAAVVLFLYGTSSVKGFATMLILSILASFITAVYGSRLLL 405

Query: 512 IFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
              +  +                           L        F++ R      SI  ++
Sbjct: 406 GLWVNSRIFTKKPTWFGVKKSEIKDIAENYDTLDLPTKYDRFDFVKHRRKFFIFSIAMAV 465

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I  L    LN GIDF  G ++ + A + V+ S ++  L  + +          ++N  
Sbjct: 466 AGIIALSVFRLNLGIDFVAGTRVEITAGQSVNKSEIQEELSKVGLETDDIIISGDDQNIG 525

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V     P        +   +     +        N   V P + +EL +     ++I+++
Sbjct: 526 VARFTDPLGKDKIAELKTHMNDVYGQE------PNVSTVSPTVGKELAKNAFKALLIASV 579

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF+ Y AL A+  L+ D    +  F++   E ++T +AA+LT++GYS+ND +
Sbjct: 580 GIIIYVTIRFEIYMALAAVIALLHDAFFIIALFSIIRFEVDITFIAAILTIVGYSINDTI 639

Query: 739 VVYDRMRKNMKLYTTSISFRDL---IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DRMR+NM+      +F D+   +++S+ +TLGRSV T +   I+V+ + ++G   I 
Sbjct: 640 VTFDRMRENMQKKKRLKTFDDIADVVNQSLRQTLGRSVSTVITVVIAVVGLLIFGSESIR 699

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           SF+  +  G+V    SS+FIA+ + L   +   K  
Sbjct: 700 SFSFALLIGLVAGTYSSLFIASQLWLVWKNKELKKK 735



 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 100/280 (35%), Gaps = 9/280 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S+           T  +         + + +               +   +         
Sbjct: 147 SLTLKSAEKFKEVTQEIVNMGAPNNLLVIWLDYEEGDSFKEESQKEDPKYLSAPQVSQVF 206

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            +    +   +   ++   + +L+     +           +  VG K   + ++K I G
Sbjct: 207 NQDTVSIVGNFSLEEAKTLSSLLKAGALPVELTEEY-----STSVGAKFGEDAMQKTITG 261

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            II  + + +++   +++     A  TL + I   L  F        L  +AA++  +G 
Sbjct: 262 GIIGILVIFLFMIAFYRFP-GFIATITLSIYIYLILLVFDWMNGVLTLPGIAALILGVGM 320

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +V+  ++ Y+R+++ +K+     S +         +L   +  ++   ++ + + ++G S
Sbjct: 321 AVDANIITYERIKEELKV---GKSVKSAFQAGNKNSLSTILDANITTILAAVVLFLYGTS 377

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +  FA  +   I+ +  ++++ +  +L    + R    +
Sbjct: 378 SVKGFATMLILSILASFITAVYGSRLLLGLWVNSRIFTKK 417



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 17/131 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           + +  +     +I    L+                + +  N I LGLDL+GG  ++ +V 
Sbjct: 3   KRSRIVAFFLIVILIGSLM-----------GGTTKNIL--NNIKLGLDLQGGFEVLYDVK 49

Query: 61  --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTL 117
             D        L   ++ L   +   G+    ++ +  N++ +  A  + +    + ++ 
Sbjct: 50  TKDGKKATKEVLNSTAEALDRRVNALGVNEPIIQIEGDNRVRVQLAGVKDQNQAREMLST 109

Query: 118 FLQGVNSKLNV 128
                   +N 
Sbjct: 110 EANLSFRDVND 120


>gi|254693625|ref|ZP_05155453.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella
           abortus bv. 3 str. Tulya]
          Length = 775

 Score =  329 bits (843), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L+ +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753



 Score = 98.6 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L+  P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|189024077|ref|YP_001934845.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus S19]
 gi|237815323|ref|ZP_04594321.1| protein-export membrane protein SecD [Brucella abortus str. 2308 A]
 gi|254689141|ref|ZP_05152395.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella
           abortus bv. 6 str. 870]
 gi|254697275|ref|ZP_05159103.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730174|ref|ZP_05188752.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella
           abortus bv. 4 str. 292]
 gi|256257391|ref|ZP_05462927.1| vacuolar H+-transporting two-sector ATPase subunit C [Brucella
           abortus bv. 9 str. C68]
 gi|189019649|gb|ACD72371.1| Vacuolar H+-transporting two-sector ATPase, C subunit [Brucella
           abortus S19]
 gi|237790160|gb|EEP64370.1| protein-export membrane protein SecD [Brucella abortus str. 2308 A]
          Length = 775

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L+ +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+++  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIVILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753



 Score = 98.6 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L+  P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|281424727|ref|ZP_06255640.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella oris F0302]
 gi|281401097|gb|EFB31928.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella oris F0302]
          Length = 996

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 213/830 (25%), Positives = 385/830 (46%), Gaps = 60/830 (7%)

Query: 61  DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIAD 113
           + +  +   +Q   D     +R+ + K G+   ++++      +I +     +  E +  
Sbjct: 157 EVEKVLREEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRK 216

Query: 114 KVTLFLQGVNSKL------------------NVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
            +         +                   N            +K+  +   +  +   
Sbjct: 217 LLQGSANLEFWETYNAEEVIPYLQQLDSRLANDASNDTTTAQQAQKKAVVKGVKFQVKNA 276

Query: 156 ISHAIEQ----SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
               + Q     ME  +++   + + + T Q   +      +       +L         
Sbjct: 277 DKETVAQKSNAQMEAAKKQHPLLAMLQPTGQNSLALVGYASVRDTAAIDKLIYGQTAKQV 336

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKPVV 270
           +     L  ++        + +      +      +  + G  +  A   F+  T +P V
Sbjct: 337 LPSDIKLLWSATPEDGIKAKNIFGLYAIKVTSNNGQAPLQGDVVVDAKDEFNHVTGQPEV 396

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
           +++ +  GARR+  +T+ N+GK +A+VLD  V +AP +N  I  G + ISGNFT+E    
Sbjct: 397 NMTMNTEGARRWAALTKANVGKAIAIVLDDAVYSAPRVNGEIDGGSSAISGNFTVEMTKD 456

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389
           LA  L++G +P    IV+E  VG  LG+ SI +G  +     VL++++M+++Y    G++
Sbjct: 457 LANTLKSGRMPAPARIVQEEVVGPTLGAASIQQGIVSFAIAFVLLIIYMVMMYNFIPGMI 516

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ +NV  TL +L+   A LT+  IAG+VL +G AVD+N+L+ ERI+EE R  + + 
Sbjct: 517 ANTALVINVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRAGKGMK 576

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++  G+S A+S IFDSN+T+LI  V+L+ FG G ++GFA T  + I+ S F+A+ + R 
Sbjct: 577 QAVAAGYSNAFSAIFDSNLTSLITGVILYVFGTGPIQGFATTWIIGIVCSFFSAVFLTRL 636

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +    ++  + +++         L       +FM        ++++ +I  I   F  GL
Sbjct: 637 VYEHQLKKDRWQNLKYWTGISKNL-MQGKNFKFMSMYKGTFTVAVIAAIVFIGSFFVRGL 695

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
              IDF GG    V   +  +   VR  L  +  G  +     G  N  +R+        
Sbjct: 696 AQSIDFTGGRNYVVQFEKSTEPEEVREVLTHIFPGCTTGALSLGTDNKTIRISTNYKIES 755

Query: 630 AQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKG 669
               + +  + K+                     ++    +I ++  VGP +++++    
Sbjct: 756 NSPTIDDEAETKLYQGLKKAGLISQKSVEAFKNPDVRAGGSIISSSKVGPSVAKDVTYGA 815

Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG------IEFNLTA 722
           I+ VII+ +A+ +YI IRF+   F+ G+   L+LD    +G F+L        +E + T 
Sbjct: 816 IISVIIALVAIFLYILIRFRNVAFSAGSTIALVLDALTVIGLFSLLQGLLPFSLEVDQTF 875

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + AVLT+IGYS+NDKVVV+DR+R+N+KL+      + L + SIN+TL R++ TS +  I 
Sbjct: 876 IGAVLTVIGYSINDKVVVFDRIRENLKLHPK-QDIQVLFNDSINQTLARTINTSFSTLIV 934

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +L + + GG  I  FA  M  G++    SSIFIA+PI   +     K+ R
Sbjct: 935 LLVILLLGGKSIQPFAFAMTIGVIFGTLSSIFIASPIAYLLMGKSIKDRR 984



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 99/272 (36%), Gaps = 40/272 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPK---------------- 41
           M+N   ++    ++    +     +       S   +    + +                
Sbjct: 1   MQNKGIVICTAVLLTLASIFYLSFSVATSYYDSQAAKLKDPIAQQDYKDSVKYLGIYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR-SFLKKEGIGVFSMRQIQN 96
                +I LGLDL+GG +++LE+   D +       +D      +K+      + +   +
Sbjct: 61  KCLETQIGLGLDLKGGMNVILEISVPDVLETLADHKTDPAFTKSMKQARAEEETSQS--D 118

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
            I+L     R                  +L        L      + S    +  + + +
Sbjct: 119 FISLFLKYYRQ------------NAPGHRLAEIFATQQLQGKINPQSSDSEVEKVLREEV 166

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
             AI+ S  ++R RID+ G+ +  IQ+    + RI++++PG ++P R+R+LL  +A + F
Sbjct: 167 QAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRKLLQGSANLEF 226

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
            +         ++  +     +D +      +
Sbjct: 227 WETYNAEEVIPYLQQLDSRLANDASNDTTTAQ 258


>gi|299142058|ref|ZP_07035192.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella oris C735]
 gi|298576520|gb|EFI48392.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Prevotella oris C735]
          Length = 996

 Score =  329 bits (843), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 214/830 (25%), Positives = 385/830 (46%), Gaps = 60/830 (7%)

Query: 61  DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIAD 113
           + +  +   +Q   D     +R+ + K G+   ++++      +I +     +  E +  
Sbjct: 157 EVEKVLREEVQAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRK 216

Query: 114 KVTLFLQGVNSKL------------------NVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
            +         +                   N            +K+  +   +  +   
Sbjct: 217 LLQGSANLEFWETYNAEEVIPYLQQLDSRLANDASNDTTTAQQAQKKAVVKGVKFQVKNA 276

Query: 156 ISHAIEQ----SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
               + Q     ME  +++   + + + T Q   +      +       +L         
Sbjct: 277 DKETVAQKSNAQMEAAKKQHPLLAMLQPTGQNSLALVGYASVRDTAAIDKLIYGQTAKQV 336

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTHKPVV 270
           +     L  ++        + +      +      +  + G  +  A   F+  T +P V
Sbjct: 337 LPSDIKLLWSATPEDGIKAKNIFGLYAIKVTSNNGQAPLQGDVVVDAKDEFNHVTGQPEV 396

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
           +++ +  GARR+  +T+ N+GK +A+VLD  V +AP +N  I  G + ISGNFT+E    
Sbjct: 397 NMTMNTEGARRWAALTKANVGKAIAIVLDDAVYSAPRVNGEIDGGSSVISGNFTVEMTKD 456

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389
           LA  L++G +P    IV+E  VG  LG+ SI +G  +     VL++++M+++Y    G++
Sbjct: 457 LANTLKSGRMPAPARIVQEEVVGPTLGAASIQQGIVSFAIAFVLLIIYMVMMYNFIPGMI 516

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ +NV  TL +L+   A LT+  IAG+VL +G AVD+N+L+ ERI+EE R  + + 
Sbjct: 517 ANTALVINVFFTLGILTSFQAALTMSGIAGMVLSLGTAVDANVLIYERIKEELRAGKGMK 576

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++  G+S A+S IFDSN+T+LI  V+L+ FG G ++GFA T  + I+ S F+A+ + R 
Sbjct: 577 QAVAAGYSNAFSAIFDSNLTSLITGVILYVFGTGPIQGFATTWIIGIVCSFFSAVFLTRL 636

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +    ++  + +++         L       +FM        ++I+ +I  I   F  GL
Sbjct: 637 VYEHQLKKDRWQNLKYWTGISKNL-MQGKNFKFMSMYKGTFTVAIIAAIVFIGSFFVRGL 695

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
              IDF GG    V   +  +   VR  L  +  G  +     G  N  +R+        
Sbjct: 696 AQSIDFTGGRNYVVQFEKSTEPEEVREVLTHIFPGCTTGALSLGTDNKTIRISTNYKIES 755

Query: 630 AQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKG 669
               + +  + K+                     ++    +I ++  VGP +++++    
Sbjct: 756 NSPTIDDEAETKLYQGLKKAGLISQKSVEAFKNPDVRAGGSIISSSKVGPSVAKDVTYGA 815

Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG------IEFNLTA 722
           I+ VII+ +A+ +YI IRF+   F+ G+   L+LD    +G F+L        +E + T 
Sbjct: 816 IISVIIALVAIFLYILIRFRNVAFSAGSTIALVLDALTVIGLFSLLQGLLPFSLEVDQTF 875

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + AVLT+IGYS+NDKVVV+DR+R+N+KL+      + L + SIN+TL R++ TS +  I 
Sbjct: 876 IGAVLTVIGYSINDKVVVFDRIRENLKLHPK-QDIQVLFNDSINQTLARTINTSFSTLIV 934

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +L + + GG  I  FA  M  G++    SSIFIA+PI   +     K+ R
Sbjct: 935 LLVILLLGGKSIQPFAFAMTIGVIFGTLSSIFIASPIAYLLMGKSIKDRR 984



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/272 (16%), Positives = 99/272 (36%), Gaps = 40/272 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNF---LPQSMLDRFPSAMPK---------------- 41
           M+N   ++    ++    +     +       S   +    + +                
Sbjct: 1   MQNKGIVICTAVLLTLASIFYLSFSVATSYYDSQAAKLKDPIAQQDYKDSVKYLGIYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR-SFLKKEGIGVFSMRQIQN 96
                +I LGLDL+GG +++LE+   D +       +D      +K+      + +   +
Sbjct: 61  KCLETQIGLGLDLKGGMNVILEISVPDVLETLADHKTDPAFTKSMKQARAEEETSQS--D 118

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
            I+L     R                  +L        L      + S    +  + + +
Sbjct: 119 FISLFLKYYRQ------------NAPGHRLAEIFATQQLQGKINPQSSDSEVEKVLREEV 166

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
             AI+ S  ++R RID+ G+ +  IQ+    + RI++++PG ++P R+R+LL  +A + F
Sbjct: 167 QAAIDNSFNVVRTRIDKFGVVQPNIQKLEGQTGRIMVEMPGIKEPERMRKLLQGSANLEF 226

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
            +         ++  +     +D +      +
Sbjct: 227 WETYNAEEVIPYLQQLDSRLANDASNDTTTAQ 258


>gi|254701655|ref|ZP_05163483.1| SecD/SecF family protein-export membrane protein [Brucella suis bv.
           5 str. 513]
          Length = 775

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTILGNLSFRAMDDTMSPDDAIRGTPPADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753



 Score = 96.7 bits (238), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTILGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|256060998|ref|ZP_05451155.1| SecD/SecF family protein-export membrane protein [Brucella neotomae
           5K33]
          Length = 775

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 240/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA++ L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASIRLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I +LIY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGILIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGLFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753



 Score = 98.2 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|225627381|ref|ZP_03785418.1| protein-export membrane protein SecD [Brucella ceti str. Cudo]
 gi|254709993|ref|ZP_05171804.1| SecD/SecF family protein-export membrane protein [Brucella
           pinnipedialis B2/94]
 gi|254713994|ref|ZP_05175805.1| SecD/SecF family protein-export membrane protein [Brucella ceti
           M644/93/1]
 gi|254716947|ref|ZP_05178758.1| SecD/SecF family protein-export membrane protein [Brucella ceti
           M13/05/1]
 gi|256031487|ref|ZP_05445101.1| SecD/SecF family protein-export membrane protein [Brucella
           pinnipedialis M292/94/1]
 gi|260168621|ref|ZP_05755432.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella sp.
           F5/99]
 gi|225617386|gb|EEH14431.1| protein-export membrane protein SecD [Brucella ceti str. Cudo]
          Length = 775

 Score =  329 bits (842), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753



 Score = 97.8 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|327405997|ref|YP_004346835.1| protein-export membrane protein SecD [Fluviicola taffensis DSM 16823]
 gi|327321505|gb|AEA45997.1| protein-export membrane protein SecD [Fluviicola taffensis DSM 16823]
          Length = 1005

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 206/803 (25%), Positives = 367/803 (45%), Gaps = 40/803 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123
            +   +      +   + + G+   ++++    N++ +     + +  +A+K+        
Sbjct: 207  IAASMDGVELIMSKRINQFGVAQPNIQKESRKNRLYIELPGVQDEATVAEKLQSTANLQF 266

Query: 124  SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA---------IEQSMEIIRQRIDQI 174
             +         +         I  +     +V+  A           +     +  +   
Sbjct: 267  FETYS-LGDPGIQAGLTNANIISRTPEIKKEVLETASVSDTSGLDTAKVPAPAKPLVAPT 325

Query: 175  GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                   + L  +  +    G    S   +            V        FM+      
Sbjct: 326  ATGSGIKKSLFEYLKVEPGMGLGMASAENKEEVNAILKRSDIVSLFPENLKFMWSANLED 385

Query: 235  DSDGNQYLV--------EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
             ++G++  V          K E+ G  +  A  +F+ +T +  V ++    G++++  +T
Sbjct: 386  GANGSKAYVLYAVKIPENGKAEVGGEDIRSAVRSFNSQTLETTVSLTMSIDGSQKWGVMT 445

Query: 287  RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
             +NI + +A+ +D  V +APV+  AI  G  +ISG+F+I  A  LA +L  GSLP    I
Sbjct: 446  GNNINRSVAITMDDVVYSAPVVRNAINGGSTEISGDFSIAEADDLAGLLNGGSLPAPCII 505

Query: 347  VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
             E+  VG  +G ++   G  +     + + ++M   YGK GLVA+ ++ +NVIL    L+
Sbjct: 506  KEQTKVGPTIGKENSESGLVSFAFAFLAVFIYMYFYYGKGGLVANIALAINVILIFGCLA 565

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
              GA LTL  IAGIVL IG AVD+NIL+ ERI+EEN   +S   S+++GF +A  +I D+
Sbjct: 566  SFGAVLTLAGIAGIVLTIGTAVDANILIFERIKEENALGKSAEESVNIGFIKALPSIIDA 625

Query: 467  NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            N+  L+  ++L  FG G +  FA T+ + I  S+F+AI I + ++   I   K  S    
Sbjct: 626  NVAHLLVAMILKIFGTGEIESFATTLIVGIFTSVFSAIIISKLIITSSIEKGKKVSFSTK 685

Query: 527  PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 F       I     R +    SI  S+  I  + T GL   ++F GG   GV   
Sbjct: 686  YTHNMFSNFHFDWI---GKRKYFYIFSITVSVLGIAAMATRGLKQSVEFTGGRTFGVKMQ 742

Query: 587  RPVDLSVVRSNLESLQIG------DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +  D   +R  +E+  +       ++  +N     N  +   Y   D+ A  +V   +K+
Sbjct: 743  KAADTETIRKAMETYFVEKNGEKSNVEIKNKSNSYNVEITTNYLLADAAATAKVEGKMKE 802

Query: 641  KIT---EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGA 696
                  E      + +T  +   +S E+     + + ++ IA+  YI+IRF +W ++LGA
Sbjct: 803  AFETIKEKTGEIQVTDTRSIMASVSEEMWSSATLSITLALIAIFAYIFIRFGQWQYSLGA 862

Query: 697  ITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            I  L  D+   L  FAL      F ++ N   +AAVLT+IGYS+ND V+V+DR+R+++  
Sbjct: 863  ILGLAHDVLFVLSVFALLHGILPFSLDVNQAFIAAVLTVIGYSMNDTVIVFDRIRESLNF 922

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                   +++I+ ++N+TL R+  TSM  F+ +L M ++GG  I  F   +  G+V+   
Sbjct: 923  DKNQHEAKEVINDALNKTLSRTFNTSMILFVVLLIMFLFGGPAIKGFLFALLIGVVIGTY 982

Query: 811  SSIFIAAPILLFI-YDWRAKNAR 832
            SS+ +A PIL+     ++ K ++
Sbjct: 983  SSLCVATPILMDFTKTFKVKKSK 1005



 Score = 46.2 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 64/477 (13%), Positives = 142/477 (29%), Gaps = 21/477 (4%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             ++ GLDL GG  + +E+D   FV  + +   D    F K      ++           
Sbjct: 107 RSLAFGLDLVGGMSVTMEIDVPKFVETYARNKRD--LKFKKAFDAAYYTHTTKGGDFVDL 164

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
           F     KEN  DK+      V S    + K+    ++           +     I+ +++
Sbjct: 165 FISEFEKENPKDKL------VRSLAISEVKELSYNSSNSD------VASFFHDKIAASMD 212

Query: 162 QSMEIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP- 219
               I+ +RI+Q G+++  IQ+    +R+ I+LPG QD + + + L +TA + F +    
Sbjct: 213 GVELIMSKRINQFGVAQPNIQKESRKNRLYIELPGVQDEATVAEKLQSTANLQFFETYSL 272

Query: 220 -NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG 278
            +   +  +     +  +   +  V +   +S            P         +   + 
Sbjct: 273 GDPGIQAGLTNANIISRTPEIKKEVLETASVSDTSGLDTAKVPAPAKPLVAPTATGSGIK 332

Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG 338
              F  +  +          + +     ++ ++        +  F         A     
Sbjct: 333 KSLFEYLKVEPGMGLGMASAENKEEVNAILKRSDIVSLFPENLKFMWSANLEDGANGSKA 392

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
            +   + I E                +         + L M +   +   V   +     
Sbjct: 393 YVLYAVKIPENGKAEVGGEDIRSAVRSFNSQTLETTVSLTMSIDGSQKWGVMTGNNINRS 452

Query: 399 ILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR 458
           +       +  A +   +I G    I    D +I   + +             +    ++
Sbjct: 453 VAITMDDVVYSAPVVRNAINGGSTEISG--DFSIAEADDLAGLLNGGSLPAPCIIKEQTK 510

Query: 459 AYSTIF--DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
              TI   +S    +                +     ++ +      I I   +  F
Sbjct: 511 VGPTIGKENSESGLVSFAFAFLAVFIYMYFYYGKGGLVANIALAINVILIFGCLASF 567


>gi|265983986|ref|ZP_06096721.1| export membrane protein secD [Brucella sp. 83/13]
 gi|264662578|gb|EEZ32839.1| export membrane protein secD [Brucella sp. 83/13]
          Length = 785

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 57  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLATTA-----NIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKQVPKRRL 471

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763



 Score = 97.1 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   I L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLISLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L   ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLATTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|153009664|ref|YP_001370879.1| bifunctional preprotein translocase subunit SecD/SecF [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561552|gb|ABS15050.1| protein-export membrane protein SecD [Ochrobactrum anthropi ATCC
           49188]
          Length = 759

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 242/719 (33%), Positives = 405/719 (56%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  + + L        L  +    + + +            +E++  I+RQR++++G
Sbjct: 30  RETLAKLPNFLPKQQIALGLDLSGGSRLVLQV-----QNPGRGELERTANIMRQRLEELG 84

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
             +  ++    ++I +++PG  D   L+ +L      SF  V    S    + G      
Sbjct: 85  YGKPLVEEENRNQIRVEVPGVYDAQLLKDILSVRGNFSFRAVDSTMSPDDAIRGTPPADS 144

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YLV+ +  ++G ++  A A       +PV+ ++ D+ G +   E T  
Sbjct: 145 EIIYSYDDPPVGYLVKKQPILTGANVTDAKATLSDDDSEPVITLTLDDAGRKNLAEATSH 204

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
            +G   A+V+D ++++AP +++ + + + QISG F ++ A  +A +LR+G+LP  + ++E
Sbjct: 205 LVGGSFAIVVDNQIVSAPAVDEKLDTNELQISGAFDLQAANNMAVVLRSGALPQDVTVLE 264

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +L+ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 265 ERTIASALGEDYASAAALAALLAALLVGLFMVLSYGILGVIAMVALAVNIIILTAILSLI 324

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIIDANL 384

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAVGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A + 
Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARSG 501

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             ++  +   L  L I           ++ LV +  Q     A+  V   ++    E  P
Sbjct: 502 DANIEDITERLTELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLR---GEFEP 558

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  E+VGP +S +L R G++ VI+S I + IY+W+RF+W  ALGA+ + + D+   
Sbjct: 559 DYSFQRVEVVGPTVSEQLSRAGVLAVILSLIGIFIYVWVRFRWQLALGAVLSTLHDVIIL 618

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N+++Y  S     +ID SIN+
Sbjct: 619 AGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRVY-KSAPLPAIIDASINQ 677

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GG+ I SFA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 678 TLSRTLLTSFVTFLAHIPLYAFGGADIRSFALALSVGIIVASYSSIFIAAPLLVQFGLK 736



 Score = 97.1 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 73/171 (42%), Gaps = 3/171 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   +  +IA PNF  +  L + P+ +PK +I+LGLDL GGS LVL+V   
Sbjct: 5   SRWKSALIWLAVLVSFIIASPNFFSRETLAKLPNFLPKQQIALGLDLSGGSRLVLQVQNP 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGV 122
               G L+  ++ +R  L++ G G   + +   N+I +        + + D +++     
Sbjct: 65  G--RGELERTANIMRQRLEELGYGKPLVEEENRNQIRVEVPGVYDAQLLKDILSVRGNFS 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
              ++     +  +  T    S ++   +   V     +Q +       D 
Sbjct: 123 FRAVDSTMSPDDAIRGTPPADSEIIYSYDDPPVGYLVKKQPILTGANVTDA 173


>gi|265990990|ref|ZP_06103547.1| protein-export membrane protein secD [Brucella melitensis bv. 1
           str. Rev.1]
 gi|263001774|gb|EEZ14349.1| protein-export membrane protein secD [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 785

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 57  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763



 Score = 96.3 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNFL +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLVSLIIASPNFLSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|163843163|ref|YP_001627567.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           suis ATCC 23445]
 gi|163673886|gb|ABY37997.1| protein-export membrane protein SecD [Brucella suis ATCC 23445]
          Length = 775

 Score =  328 bits (841), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 239/721 (33%), Positives = 398/721 (55%), Gaps = 20/721 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKIDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSTRVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+      
Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLKS 754

Query: 828 A 828
            
Sbjct: 755 R 755



 Score = 96.3 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KIDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|325283434|ref|YP_004255975.1| protein-export membrane protein SecD [Deinococcus proteolyticus
           MRP]
 gi|324315243|gb|ADY26358.1| protein-export membrane protein SecD [Deinococcus proteolyticus
           MRP]
          Length = 762

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 203/685 (29%), Positives = 352/685 (51%), Gaps = 18/685 (2%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGT 208
                    +++   I+  R+D +G++E T+    + R++++ PG       ++R ++G 
Sbjct: 81  TTKDYTREDLDKVKTIVENRVDALGVAEPTVTVTSNDRVVVEAPGATPEIQQQVRNVIGQ 140

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           TA++ F  V    +    +   +    + G +      V+ +G  +  A A  D    + 
Sbjct: 141 TARLEFRIVKDGATPDSTLAAEKPA--TGGYKLSDLGPVQATGEIIADARAATDQSG-RW 197

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           VV     E GA++F E T  N+GK +A+VLD ++ +   INQ       QISG+F  + A
Sbjct: 198 VVAFDNTEEGAKKFGEFTGPNVGKLMAIVLDDQIQSVATINQ-QLFRGVQISGDFDADEA 256

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             LA +L +GSLPI++    ER++G  LG+D+I  G  A + GL  + + +   YG W  
Sbjct: 257 SQLALVLESGSLPIQVKTAAERSIGPSLGADAIQSGMTAGLIGLGAVFVMLFAYYGLWLG 316

Query: 389 VADFSIF-LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           +        +  + + LL   G+TLTLP IAG+VL IG AVD N++  ER +EE R+ + 
Sbjct: 317 LVGALGLLFSAAILMGLLGGFGSTLTLPGIAGLVLTIGAAVDGNVISFERFKEERRRGKG 376

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           V  ++   +  +  TI D N T LI+   L+ F  G VRGFA+ +    L S F+ +   
Sbjct: 377 VRQAIAKAYEHSTLTILDVNATHLISAFALYQFSSGPVRGFAVAVIAGTLASTFSNLVFA 436

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
           + MM ++ +          P            I FM+      G+S L ++     + T 
Sbjct: 437 KWMMTWLAQR--------FPNLSAPQWITEPRINFMKPAALIAGLSGLLALGGAAYVATQ 488

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
           GLNYG+DF+ G  +    +  V    +R+ + +     ++ QN   +++ +  ++ Q   
Sbjct: 489 GLNYGVDFRSGTTVTARFDGGVTPEQIRAQVVAAGAEGVTPQNTVIQQDIVPGIEGQQYT 548

Query: 628 SVAQTRVLEMVKKKITEIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                     V     ++       +Q++E VGP +  EL R  I  +++    +LIY+W
Sbjct: 549 IKVPELSAAEVSAVGQQLASLSGGEVQSSETVGPAVGAELTRNTIYAMLLGLTGILIYVW 608

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            RF     LG+I   + D+   +G +AL G+EFN+  VAA+LTLIGYS+ND +++ DR+R
Sbjct: 609 FRFDLVMGLGSILATVHDVAIAVGIYALLGLEFNIATVAAILTLIGYSLNDSIIISDRIR 668

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +N++      S+RD+++ SIN+TL R+V TS++  + ++ + ++GG V+  F++ +  GI
Sbjct: 669 ENLRAM-RGQSYRDIVNTSINQTLSRTVMTSLSTMLPLVALLLFGGPVLRDFSLILLIGI 727

Query: 806 VVAASSSIFIAAPILLFIYDWRAKN 830
           +V   SSI+I AP+++F  + R + 
Sbjct: 728 IVGTYSSIYIVAPLVVFWNERRDRR 752



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 72/248 (29%), Gaps = 7/248 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +PW  +L  +     L      +       +  +      ++LGLDLRGG  + LE  
Sbjct: 23  RPSPWTGLLLLVTFLTALAFIWRPWQHPDTPTQLYN-DQYQAVTLGLDLRGGLRIELEPT 81

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRF--KENIADKVTLF 118
             D+    L      + + +   G+   ++     +++ +    +    ++ + + +   
Sbjct: 82  TKDYTREDLDKVKTIVENRVDALGVAEPTVTVTSNDRVVVEAPGATPEIQQQVRNVIGQT 141

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            +     +      +  +   +            D     A  + +   R   DQ G   
Sbjct: 142 ARLEFRIVKDGATPDSTLAAEKPATGGYKL---SDLGPVQATGEIIADARAATDQSGRWV 198

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                              +  +L  ++      S   +     +   + G     ++  
Sbjct: 199 VAFDNTEEGAKKFGEFTGPNVGKLMAIVLDDQIQSVATINQQLFRGVQISGDFDADEASQ 258

Query: 239 NQYLVEDK 246
              ++E  
Sbjct: 259 LALVLESG 266


>gi|265994827|ref|ZP_06107384.1| protein-export membrane protein secD [Brucella melitensis bv. 3
           str. Ether]
 gi|262765940|gb|EEZ11729.1| protein-export membrane protein secD [Brucella melitensis bv. 3
           str. Ether]
          Length = 785

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 57  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763



 Score = 97.1 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|325860198|ref|ZP_08173323.1| export membrane protein SecD [Prevotella denticola CRIS 18C-A]
 gi|327312702|ref|YP_004328139.1| export membrane protein SecD [Prevotella denticola F0289]
 gi|325482285|gb|EGC85293.1| export membrane protein SecD [Prevotella denticola CRIS 18C-A]
 gi|326944299|gb|AEA20184.1| export membrane protein SecD [Prevotella denticola F0289]
          Length = 1007

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 205/835 (24%), Positives = 371/835 (44%), Gaps = 69/835 (8%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + + + + + G+   ++++    + ++ +     R  E +   +     
Sbjct: 164 EEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSAN 223

Query: 121 GVNSKLN----------------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
               +                   +          +             +    A + + 
Sbjct: 224 LEFWETYNNQEVAPYLAQLDQRLANGDTKADTVAADSTRKAQAKPAATPKFALKADKSAA 283

Query: 165 EIIRQRIDQIGISESTIQRLGSHRIL----IQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
                +   +      +  L +        +     +D + + +L+ +            
Sbjct: 284 AGEDAQTAALKKMHPLLSMLQTIPGDALSLVGYASVRDTAAINKLIHSPLAKQVLPSDLK 343

Query: 221 NSKKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
                        ++      L     + +  + G  +  A   FD    +P V ++ + 
Sbjct: 344 LLWGAKPADGLNKKNVYELYALKITTADGRAPMEGDVVTDAKDQFDQFG-RPEVSMTMNS 402

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR +  +T+ N+GK +A+VLDG V +AP ++  I  G++ I GNFTIE    LA  L+
Sbjct: 403 EGAREWAALTKANVGKAIAIVLDGVVYSAPRVDGEIDGGQSSIRGNFTIEDTKDLANTLK 462

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIF 395
           +G +P    IV+E  VG  LG+ SI +G  + V   VL++L+MIV+Y    G++A+ ++ 
Sbjct: 463 SGRMPAPAKIVQEEVVGPTLGAQSIQQGLVSFVIAFVLLMLYMIVMYNVIPGMMANLALI 522

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
            N+  TL +L+   + LT+P IAGIVL +G AVD+N+L+ ERI+EE R  + +  +L  G
Sbjct: 523 ANLFFTLGVLASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELRLGKGMKQALHEG 582

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           +S A+S IFDSN+T+LI  V+L   G G +RGFA T  + I+IS FTA+ + R +    +
Sbjct: 583 YSNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTWIIGIIISFFTAVFLTRLVFENRV 642

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
              K  ++  +               F+        +  +  +  I      GL+  IDF
Sbjct: 643 SNDKWLNLTFSTGFSKNF-MQGKNFHFLSMYKRSFTVWGVAVVICIVSFVVRGLSRSIDF 701

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIG-----------------DISFQNFDGEKNFL 618
            GG    V  N+P  +  VR  +    +                      +      N+ 
Sbjct: 702 TGGRNYVVTLNKPTQVEDVRKVMNGAFVNTVGEKAGKPATTNVIALGTDGKTVRISTNYN 761

Query: 619 VRLQYQPGDSVAQTRVLEMV------------KKKITEIVPLSTIQNTEIVGPKISRELI 666
           +       D  A+T + + +              K  +I    +I  +  VGP I++ + 
Sbjct: 762 IESNDPLEDDKAETILYKALKRGGFVSQTSVANFKNPDIREGGSIIQSAKVGPSIAKNIT 821

Query: 667 RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFN 719
               + V+++   + +YI +RF+   F++G+I  L+LD T  +GFF+L      F +E +
Sbjct: 822 YNAFLSVLLAIFFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGFFSLCYGWIGFSLEID 881

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTS 776
            T + A+LT+IGY +ND VVVYDR+R+N++ +         +++ + SIN+TL R++ TS
Sbjct: 882 QTFIGAILTVIGYDINDTVVVYDRIRENLRNHRHNLAKADIQEIFNSSINQTLSRTINTS 941

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++  I ++ + + GG  I SFA  M  GI++   SSIFIA+P+   +   R +  
Sbjct: 942 VSTLIVLVSIFILGGDSIRSFAFAMIIGIIIGTLSSIFIASPVAYLVLGKRIEKR 996



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 95/253 (37%), Gaps = 40/253 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N   ++ +  ++    +     +        +                          
Sbjct: 1   MQNKGLVICVAVLLTLASIFYLSFSVATSYYDSQAAKIKDPIAQQDYKDSVKYLGIYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQN 96
                +I LGLDL+GG ++VLE+   D V+       D   +  + +      + ++  +
Sbjct: 61  KCLETQIGLGLDLKGGMNVVLEISVPDVVDVLADHKQDAAYQKAMAEAKQEEMTSQK--D 118

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
            ITL             KV               K  +   +++ E      +  + + +
Sbjct: 119 FITLFID-------AYHKVAPGHSLAEVFATQQLKGKVSTQSSDSE-----VEKALREEV 166

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
           + AI+ S  ++  RIDQ G+ +  IQ+      R+++++PG ++P R+R+LL  +A + F
Sbjct: 167 ASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEF 226

Query: 215 HKVLPNNSKKGFM 227
            +   N     ++
Sbjct: 227 WETYNNQEVAPYL 239


>gi|261222076|ref|ZP_05936357.1| protein-export membrane protein secD [Brucella ceti B1/94]
 gi|265998041|ref|ZP_06110598.1| protein-export membrane protein secD [Brucella ceti M490/95/1]
 gi|260920660|gb|EEX87313.1| protein-export membrane protein secD [Brucella ceti B1/94]
 gi|262552509|gb|EEZ08499.1| protein-export membrane protein secD [Brucella ceti M490/95/1]
          Length = 785

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 397/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 57  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      + V+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQSVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 351

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763



 Score = 98.2 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQSVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|282859925|ref|ZP_06269013.1| protein-export membrane protein SecD [Prevotella bivia JCVIHMP010]
 gi|282587328|gb|EFB92545.1| protein-export membrane protein SecD [Prevotella bivia JCVIHMP010]
          Length = 995

 Score =  328 bits (840), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 207/840 (24%), Positives = 375/840 (44%), Gaps = 75/840 (8%)

Query: 61  DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIAD 113
           + +  +   +    D     +R+ + + G+   ++++    + ++ +     R  E +  
Sbjct: 144 EVEKALRAEVTAAIDNSYNVVRNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRK 203

Query: 114 KVTLFLQGVNSKL-----------------------NVDPKKNLLVTTTEKEISIVLSQN 150
            +         +                              + +  TT     I L+  
Sbjct: 204 LLQGSANLEFWETYNNQEVAPYLQQLDQRLANGDTKPDTTATDSVKATTASTNKIALTAA 263

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL---G 207
                 +    +          Q  +        G    ++     +D + + +L+    
Sbjct: 264 KKAFGKAAGASKEAAGAEALKKQHPLLSRLQLIPGDALSVVGYANVRDTAAINKLIHSQL 323

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL-VEDKVEISGIHLNGATANFDPKTH 266
               +     L  ++K      V+   +    +    + +  + G  +  A   FD    
Sbjct: 324 AKQVLPTDLRLLWSAKPADNIQVKNTFELHALKVTTSDGRAPLEGDVITDAKDQFDQFGK 383

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
            P V +S +  GAR +  +T+ N+GK +AVVLDG V TAP IN  I  G++ ISG+FT+ 
Sbjct: 384 -PEVSMSMNSEGAREWAALTKANVGKAIAVVLDGVVYTAPRINTEIDGGQSSISGSFTVA 442

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK- 385
               LA  L++G +P    IV+E  VG  LG+ SI +G  +     VL++ +MI +YG  
Sbjct: 443 DTKDLANTLKSGRMPAPAKIVQEEVVGPTLGAQSIQQGLISFAIAFVLLMFYMIAMYGFI 502

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++A+ ++  N+  TL +++   + LT+P IAGIVL +G AVD+N+L+ ERI+EE R  
Sbjct: 503 PGMMANSALIANLFFTLGIMASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELRLG 562

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           + +  +L  G+  A+S IFDSN+T+LI  V+L   G G +RGFA T+ + ++IS FTA+ 
Sbjct: 563 KGMKQALHEGYKNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTLIIGLIISFFTAVF 622

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           + R +    +   K   +         L+ +  +++FM+       I  +  +  I    
Sbjct: 623 LTRLVFESRVNNDKWLHLSFTTGISKNLLQN-TSMRFMQMHKKSFTIWGIAIVICIVSFA 681

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG--------------------- 604
             GL+  I+F GG    +  ++P  +  +R   +   +                      
Sbjct: 682 VRGLSRSIEFTGGRNYVITLSKPAPVEDIRKIFDGAFVNTEGANKGKAATTTVIAIGTDG 741

Query: 605 -------DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
                  + +  +   + +    + Y             + K K  +I    +I  +  V
Sbjct: 742 KTIRVSTNWNVDSSKDDDDQAENILYATLKKHNYVSQESVAKFKNPDIREGGSIIQSAKV 801

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL--- 713
           GP I++ +     + V ++ + + +YI +RF+   F++G+I  LILD T  +G F+L   
Sbjct: 802 GPSIAKNITTNAFISVGLAIVFIFLYILLRFRNIGFSVGSIVGLILDTTIVVGIFSLCHG 861

Query: 714 ---FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINE 767
              F +E + T + A+LT+IGY +ND VVV+DR+R+NM  + +       + L ++SINE
Sbjct: 862 WIGFSLEIDQTFIGAILTVIGYDINDTVVVFDRIRENMGKHKSTLAKYGLQRLFNESINE 921

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS +  I +  + + GG    SF+  M  GI++   SSIFIA+PI   +   +
Sbjct: 922 TLSRTINTSFSTLIVLFAIFILGGDSTRSFSFAMIIGIIIGTLSSIFIASPIAYIVMGHK 981



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 87/180 (48%), Gaps = 7/180 (3%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E+VGP +  + I++G++   I+ + ++ Y+   + +   + A + LI ++  TLG  A
Sbjct: 464 QEEVVGPTLGAQSIQQGLISFAIAFVLLMFYMIAMYGFIPGMMANSALIANLFFTLGIMA 523

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F     +  +A ++  +G +V+  V++Y+R+++ ++L       +  + +         
Sbjct: 524 SFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELRL---GKGMKQALHEGYKNAFSAI 580

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +++ + I+ + + V G   I  FA  +  G+++    S F A  +   +++ R  N +
Sbjct: 581 FDSNLTSLITGVILLVTGTGPIRGFATTLIIGLII----SFFTAVFLTRLVFESRVNNDK 636



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 15/190 (7%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
           + +I LGLDL+GG ++VLE+   D V+      +D   +++K            Q     
Sbjct: 51  ETQIGLGLDLKGGMNVVLEISVPDVVDMLADHKTDP--AYVKSLNEAKEQELAGQGNFIS 108

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
            F  +  K     K+         +L          +  EK +   ++          AI
Sbjct: 109 LFIKAYQKNAPGHKLAEIF--ATQQLKGKVSTQSTDSEVEKALRAEVTA---------AI 157

Query: 161 EQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
           + S  ++R RIDQ G+ +  IQ+      R+++++PG ++P R+R+LL  +A + F +  
Sbjct: 158 DNSYNVVRNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEFWETY 217

Query: 219 PNNSKKGFMF 228
            N     ++ 
Sbjct: 218 NNQEVAPYLQ 227


>gi|15806822|ref|NP_295545.1| bifunctional preprotein translocase subunit SecD/SecF [Deinococcus
           radiodurans R1]
 gi|6459594|gb|AAF11371.1|AE002022_4 protein-export membrane protein, putative [Deinococcus radiodurans
           R1]
          Length = 768

 Score =  328 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 209/686 (30%), Positives = 366/686 (53%), Gaps = 17/686 (2%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGT 208
                    +++   +I  RI+ +G++E T+   G  R+++++PG       R R ++  
Sbjct: 87  ESGTATRDELDRVKTVIENRINALGVAEPTVTVSGGKRVVVEIPGATPAVQDRARSIIQQ 146

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           TA++ F  V  +      +        S G        V  +G  +  AT+  D ++ + 
Sbjct: 147 TARLEFRIVNSDAKPDPAVREKNPR--SSGYTLAQLGPVVATGETIADATSGTDQRSGQW 204

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           VV+    + GA+ F + T  N+ + +AVVLD ++ +   INQ       QISGNFT E A
Sbjct: 205 VVNFKTTDAGAKTFGDFTGKNVNRLMAVVLDDQIQSVATINQ-RLFRDIQISGNFTPEEA 263

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWG 387
             LA +L++G+LPIK+    ER++G  LG+D+I  G  A + G+ L+ + +   YG  +G
Sbjct: 264 SQLALVLKSGALPIKIVTAAERSIGPSLGADAIRSGAIAALVGIGLVFVMLFAYYGLWFG 323

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           LV    +  + I+ L +L   GATLTLP IAG+VL IG AVD N++  ERI+EE  + + 
Sbjct: 324 LVGALGLLFSSIIILGILGGFGATLTLPGIAGLVLTIGAAVDGNVISFERIKEELARGKG 383

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           +  ++  G+  + + I D N + L++ + L+ +  GAV+GFA+T+ + ++ S F+ +   
Sbjct: 384 IKNAIGAGYEHSTAAILDVNASHLLSALALYNYSTGAVKGFAVTLIIGVIASTFSNLVFA 443

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
           +  M ++ + +        P              FM+       +S+L ++    L+ T 
Sbjct: 444 KWFMQWLAQRR--------PNMSAPQWIKHTHFDFMKPAKVITTLSVLLALAGAALVATR 495

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
           GLNYG+DF  G  L    +R V    +R+++    +  ++ Q+   +++     Q Q   
Sbjct: 496 GLNYGVDFAPGTTLTARVDRQVTTEQLRNSVIGAGVSKVTGQSATIQRDTTPGQQGQNFT 555

Query: 628 SVAQTRVLEMVKKKITEIV--PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                     VK+    I   P   +  +E VGP + +EL +K I  V++    +L+Y+ 
Sbjct: 556 VKVPELNDAEVKQIGAAIGKLPQGQVLASETVGPAVGKELTQKTIYAVLLGLGLILVYVG 615

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            RF +   LG+I   I D+   +G F+L G+EF + +VAA+LTLIGYS+ND ++V DR+R
Sbjct: 616 FRFDFIMGLGSIIAAIHDVAIAMGLFSLLGLEFTVASVAALLTLIGYSLNDSIIVSDRIR 675

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +NMK      S+R++++ +IN+TL R+V TS++  + ++ + ++GG V+  F++ +  GI
Sbjct: 676 ENMKTM-RGHSYREIVNAAINQTLSRTVMTSVSTMLPLISLLIFGGPVLRDFSLILLVGI 734

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           +V   SSI+I AP++++  +WR KN 
Sbjct: 735 LVGTYSSIYIVAPLVVYFEEWRDKNR 760



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/208 (10%), Positives = 60/208 (28%), Gaps = 7/208 (3%)

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSF 102
           ++LGLDL+GG  + L  +        L      + + +   G+   ++      ++ +  
Sbjct: 70  MTLGLDLKGGLRIELAPESGTATRDELDRVKTVIENRINALGVAEPTVTVSGGKRVVVEI 129

Query: 103 ADSRFK--ENIADKVTLFLQGVNSKLNVDP-KKNLLVTTTEKEISIVLSQNNIDQVISHA 159
             +     +     +    +     +N D      +     +     L+Q          
Sbjct: 130 PGATPAVQDRARSIIQQTARLEFRIVNSDAKPDPAVREKNPRSSGYTLAQLGPVVATGET 189

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           I  +     QR    G      +   +          ++ +RL  ++      S   +  
Sbjct: 190 IADATSGTDQRS---GQWVVNFKTTDAGAKTFGDFTGKNVNRLMAVVLDDQIQSVATINQ 246

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
              +   + G     ++     +++   
Sbjct: 247 RLFRDIQISGNFTPEEASQLALVLKSGA 274


>gi|17987359|ref|NP_539993.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis bv. 1 str. 16M]
 gi|256044565|ref|ZP_05447469.1| protein translocase subunit SECD / protein translocase subunit SECF
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|17983044|gb|AAL52257.1| protein translocase subunit secd / protein translocase subunit secf
           [Brucella melitensis bv. 1 str. 16M]
          Length = 775

 Score =  328 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753



 Score = 95.9 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNFL +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFLSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|225852404|ref|YP_002732637.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis ATCC 23457]
 gi|256113438|ref|ZP_05454279.1| protein-export membrane protein SecD [Brucella melitensis bv. 3
           str. Ether]
 gi|225640769|gb|ACO00683.1| protein-export membrane protein SecD [Brucella melitensis ATCC
           23457]
          Length = 775

 Score =  328 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753



 Score = 96.7 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|256159613|ref|ZP_05457375.1| SecD/SecF family protein-export membrane protein [Brucella ceti
           M490/95/1]
 gi|256254893|ref|ZP_05460429.1| SecD/SecF family protein-export membrane protein [Brucella ceti
           B1/94]
          Length = 775

 Score =  328 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 397/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      + V+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQSVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753



 Score = 97.8 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQSVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|261314362|ref|ZP_05953559.1| export membrane protein secD [Brucella pinnipedialis M163/99/10]
 gi|261303388|gb|EEY06885.1| export membrane protein secD [Brucella pinnipedialis M163/99/10]
          Length = 785

 Score =  328 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 397/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 57  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ L M++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALLAALVVGLVMVLSYGILGVIALVALVVNIIILTAVLSLI 351

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 352 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 411

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 412 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 471

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 472 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 528

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 529 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 585

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 586 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 645

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 646 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 704

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 705 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 763



 Score = 98.2 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|189461655|ref|ZP_03010440.1| hypothetical protein BACCOP_02318 [Bacteroides coprocola DSM 17136]
 gi|189431627|gb|EDV00612.1| hypothetical protein BACCOP_02318 [Bacteroides coprocola DSM 17136]
          Length = 994

 Score =  328 bits (839), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 211/832 (25%), Positives = 380/832 (45%), Gaps = 62/832 (7%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADK 114
           +E    + V   +    + LR+ + + G+   +++ ++    +I +     +  E +   
Sbjct: 160 VEAVLREEVKAAVDNSYNVLRTRIDRFGVAQPNIQTLEGKMGRIMVELPGIKEPERVRKL 219

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +         +     +   ++ + +     +L+    D V +  +  +   I  +    
Sbjct: 220 LQGSANLEFWETFEAKEIVPVLASADSRARDLLAGTVTDSVQTDTVATAQPAISAKDSLA 279

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT-------------TAKMSFHKVLPNN 221
              +       S   + Q+  E     + QL  +             TA+++    +P  
Sbjct: 280 AALKGETASNTSGANIEQMKKEHPLLSVLQLNQSGVGAIVAYADRNDTAEVNRILSMPEI 339

Query: 222 S--------------KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
                             F    R              +  + G  +  A  ++D     
Sbjct: 340 QKQLPRDLKLMWGVAAADFDKSGRIFELYAIKSTERNGRAPLEGDVVTDARDSYDQYNK- 398

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
           P V +S +  GARR+  +T+ N+G+ +A+ LDG V +AP +N  IP G+++ISG+FT E 
Sbjct: 399 PCVSMSMNTEGARRWAALTKQNVGRSIAIALDGYVYSAPRVNGEIPGGQSEISGSFTPEQ 458

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-W 386
              LA +L++G +P    IV+E  VG  LG +SI +G  + V  LV+++++M  +YG   
Sbjct: 459 TKDLANVLKSGKMPAPARIVQEDIVGPSLGQESINQGIISFVVALVVLMIYMCAMYGFIP 518

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G++A+ ++F+N   TL +LS   A LT+  IAG+VL +G+AVD+N+L+ ER +EE +  +
Sbjct: 519 GMIANCALFVNFFFTLGILSSFQAALTMSGIAGMVLSLGMAVDANVLIYERTKEELKAGK 578

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
               +L  G++ A+S IFDSN+T++I  ++LF FG G +RGFA T+ + IL S FTA+ +
Sbjct: 579 GTKQALSEGYANAFSAIFDSNLTSIITGIILFNFGTGPIRGFATTLIIGILCSFFTAVFL 638

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
            R +    +   K  ++         L    +   FM        I     +  I   F 
Sbjct: 639 TRLVYEHYMGKDKWLNLTFTTGISKNL-MQNVHYNFMGVTKRSFIIWGAVIVVCIISFFA 697

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            GL+  IDF GG    V   + V    VRS L+             G     +R+     
Sbjct: 698 RGLSQSIDFTGGRNFVVQFEQVVQPETVRSLLQPKVGDANVQAIALGTDGKTIRVTTNYR 757

Query: 627 DSVAQTRVLEMVKKKI---------------------TEIVPLSTIQNTEIVGPKISREL 665
                  +   +++ +                      +     +I +++ VGP I+ ++
Sbjct: 758 IEEDSPTIDAEIEEFLYDALKEGNLLGEGTTLEIFIDRDNRTGGSIISSQKVGPSIADDI 817

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEF 718
               +  V+++ IA+ +YI +RF+   +++GA   L +D    +G +++      F +E 
Sbjct: 818 KTSAVWSVVLALIAIGLYILVRFRNIAYSVGATVALAVDTLLIIGMYSIWYGILPFSLEI 877

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           + T + A+LT IGYS+NDKVV++DR+R+   LY        L + S+N TL R++ TS++
Sbjct: 878 DQTFIGAILTAIGYSINDKVVIFDRVREFFHLYPKR-DRAKLFNDSLNTTLCRTINTSLS 936

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             I +L + + GG  I SFA  M  G+V+   SS+F+AAP+       + K+
Sbjct: 937 TLIVLLSILILGGDSIRSFAFAMILGVVIGTLSSLFVAAPVAYLTMGHKMKD 988



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 98/244 (40%), Gaps = 40/244 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ-----------------SMLDRFPSAM---- 39
           M+N  ++ +   ++  + +     +F+ +                   +      +    
Sbjct: 1   MQNKGFVKVFAILLTLVCVFYLSFSFVTRYHMKKAAEDPKGETHYLDSVQNEKVWLGSYT 60

Query: 40  ----PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95
                +  I LGLDL+GG +++LEV   D V       +DE  +    E      +    
Sbjct: 61  LKQCREMEIGLGLDLKGGMNVILEVSVPDVVKALADNKTDEAFNKAVAE-AAKQQVTSQD 119

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           + IT+   +         K+    +          K  +   +T+ E+  VL +      
Sbjct: 120 DFITIFIRE-------YKKLAPEGKLAELFATQQLKDKVTTRSTDAEVEAVLREE----- 167

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
           +  A++ S  ++R RID+ G+++  IQ       RI+++LPG ++P R+R+LL  +A + 
Sbjct: 168 VKAAVDNSYNVLRTRIDRFGVAQPNIQTLEGKMGRIMVELPGIKEPERVRKLLQGSANLE 227

Query: 214 FHKV 217
           F + 
Sbjct: 228 FWET 231


>gi|62289836|ref|YP_221629.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           abortus bv. 1 str. 9-941]
 gi|260545417|ref|ZP_05821158.1| vacuolar H+-transporting two-sector ATPase [Brucella abortus NCTC
           8038]
 gi|88941986|sp|Q2YNM0|SECD_BRUA2 RecName: Full=Protein-export membrane protein secD
 gi|90183178|sp|P0C117|SECD_BRUAB RecName: Full=Protein-export membrane protein secD
 gi|62195968|gb|AAX74268.1| protein-export membrane protein, SecD/SecF family [Brucella abortus
           bv. 1 str. 9-941]
 gi|260096824|gb|EEW80699.1| vacuolar H+-transporting two-sector ATPase [Brucella abortus NCTC
           8038]
          Length = 758

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L+ +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 30  RETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 85  YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 144

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+++  A+LSL+
Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIVILTAVLSLI 324

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736



 Score = 97.8 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L+  P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 5   SRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 65  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 123 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238

Query: 243 VE 244
            +
Sbjct: 239 FD 240


>gi|325268541|ref|ZP_08135171.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella
           multiformis DSM 16608]
 gi|324989069|gb|EGC21022.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella
           multiformis DSM 16608]
          Length = 1007

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 194/834 (23%), Positives = 362/834 (43%), Gaps = 67/834 (8%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120
           + V   +    + + + + + G+   ++++    + ++ +     R  E +   +     
Sbjct: 164 EEVASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSAN 223

Query: 121 GVNSKLN-----------------------VDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               +                              +          +        D+  +
Sbjct: 224 LEFWETYNNQEVTPYLAQLDQRLANGDTKADTVAADSTRKAQANPAATPKFALKADKGAA 283

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
              +     +++    + + ++      S      +      ++L         +     
Sbjct: 284 AGEDVQTAALKKMHPLLSMLQTIPGDALSLVGYASVRDTAAINKLIHSPLAKQVLPSDLK 343

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
           L   +K       + + +    +    D        +     +   +  +P V ++ +  
Sbjct: 344 LLWGAKPADGLNKKNVYELYALKITTADGRAPMEGDVVTDAKDQFDQFGRPEVSMTMNSE 403

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
           GAR +  +T+ N+GK +A+VLDG V +AP +N  I  G++ I+GNFTIE    LA  L++
Sbjct: 404 GAREWAALTKANVGKAIAIVLDGVVYSAPRVNGEIDGGQSSITGNFTIEDTKDLANTLKS 463

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFL 396
           G +P    IV+E  VG  LG+ SI +G  +     VL++++MIV+Y    G++A+ ++  
Sbjct: 464 GRMPAPAKIVQEEVVGPTLGAQSIQQGLVSFAIAFVLLMIYMIVMYNVIPGMMANLALIA 523

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N+  TL +L+   + LT+P IAGIVL +G AVD+N+L+ ERI+EE R  + +  +L  G+
Sbjct: 524 NLFFTLGVLASFQSALTMPGIAGIVLTLGTAVDANVLIYERIKEELRLGKGMKQALHEGY 583

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
             A+S IFDSN+T+LI  V+L   G G +RGFA T  + I+IS FTA+ + R +    + 
Sbjct: 584 GNAFSAIFDSNLTSLITGVILLVTGTGPIRGFATTWIIGIIISFFTAVFLTRLVFENRVS 643

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
             K  +  +   +            F+        +  +  +  +      GL+  IDF 
Sbjct: 644 NDKWLN-QMFTTAVSKNFMQNKKFHFLSMYRRSFTVWGVAIVICVVSFVVRGLSRSIDFT 702

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           GG    V  N+P  +  VR  +    +  +           ++ L          T    
Sbjct: 703 GGRNYVVTLNKPTQVEEVRKVMNGAFVNTVGENAGKPANTNVIALGTDGKTVRISTNYNI 762

Query: 637 MVKKKITEIVPLSTIQN-----------------------------TEIVGPKISRELIR 667
                + +    + + +                             +  VGP I++ +  
Sbjct: 763 ESNDPLEDDKAETILYSALKKGGFVSQTSVANFKNPDIREGGSIIQSAKVGPSIAKNITY 822

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNL 720
              + V+++   + +YI +RF+   F++G+I  L+LD T  +GFF+L      F +E + 
Sbjct: 823 NAFMSVLLAIFFIFLYILLRFRNIGFSVGSIVGLVLDTTIVIGFFSLCYGWIGFSLEIDQ 882

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSM 777
           T + A+LT+IGY +ND VVVYDR+R+N++ +         + + + SINETL R++ TS+
Sbjct: 883 TFIGAILTVIGYDINDTVVVYDRIRENLRKHKHNLLKADIQKIFNDSINETLSRTINTSV 942

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  I ++ + + GG  I SFA  M  GI++   SSIFIA+P+   +   + +  
Sbjct: 943 STLIVLVSIFILGGDSIRSFAFAMIIGIIIGTLSSIFIASPVAYLVLGKKIEKR 996



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/253 (17%), Positives = 95/253 (37%), Gaps = 40/253 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N   ++ +  ++    +     +        +                          
Sbjct: 1   MQNKGLVICVAVLLTLASIFYLSFSVATSYYDSQAAKIKDPIAQQDYKDSVKYLGIYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQN 96
                +I LGLDL+GG ++VLE+   D V+       D   +  + +      + ++  +
Sbjct: 61  KCLETQIGLGLDLKGGMNVVLEISVPDVVDVLADHKQDAAYQKAMAEARQEEMTSQK--D 118

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
            ITL             KV               K  +   +++ E      +  + + +
Sbjct: 119 FITLFID-------AYHKVAPGHSLAEVFATQQLKGKVSTQSSDSE-----VEKALREEV 166

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
           + AI+ S  ++  RIDQ G+ +  IQ+      R+++++PG ++P R+R+LL  +A + F
Sbjct: 167 ASAIDNSYNVVTNRIDQYGVVQPNIQKLEGQEGRLMVEMPGIREPERMRKLLQGSANLEF 226

Query: 215 HKVLPNNSKKGFM 227
            +   N     ++
Sbjct: 227 WETYNNQEVTPYL 239


>gi|161618851|ref|YP_001592738.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           canis ATCC 23365]
 gi|161335662|gb|ABX61967.1| protein-export membrane protein SecD [Brucella canis ATCC 23365]
          Length = 775

 Score =  327 bits (838), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 695 TLSRTLLTSFVIFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753



 Score = 97.8 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|261758095|ref|ZP_06001804.1| vacuolar H+-transporting two-sector ATPase [Brucella sp. F5/99]
 gi|261738079|gb|EEY26075.1| vacuolar H+-transporting two-sector ATPase [Brucella sp. F5/99]
          Length = 758

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 30  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 85  YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 144

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 324

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736



 Score = 97.5 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 5   SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 65  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 123 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238

Query: 243 VE 244
            +
Sbjct: 239 FD 240


>gi|226355938|ref|YP_002785678.1| bifunctional preprotein translocase subunit SecD/SecF [Deinococcus
           deserti VCD115]
 gi|226317928|gb|ACO45924.1| putative Protein-export membrane protein secDF [Deinococcus deserti
           VCD115]
          Length = 768

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 204/686 (29%), Positives = 360/686 (52%), Gaps = 17/686 (2%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGT 208
                    +++   +I  RI+ +G++E T+   G  R+++++PG       + R+++  
Sbjct: 85  EGGPATKEELDRVKTVIENRINALGVAEPTVTVAGGKRVVVEIPGATPAVQQQAREIIQR 144

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           TA++ F  V  N      +       +  G        V+ +G  +  A A  DP+T + 
Sbjct: 145 TARLEFRIVQDNAQPDPELAQKNPRSN--GYSLDQLGPVQATGEIIASAQAATDPQTGRW 202

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           VV  +  + GA+ F + T  N+ K +AVVLD ++ +   I Q       QISGNF  E A
Sbjct: 203 VVSFTNTDKGAQTFGDFTGKNVNKLMAVVLDDQIQSVATIQQ-RLFRDVQISGNFDAEEA 261

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWG 387
             LA +L++G+LPIK+    ER +G  LG+D+I  G  A + G+ L+   + + Y   +G
Sbjct: 262 SQLALVLKSGALPIKVKTEAERAIGPTLGADAIRSGAIASLVGIALVFGMLFLYYGFWFG 321

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           LV    +  + ++ L +L   GATLTLP IAG+VL IG AVD N++  ERI+EE ++ + 
Sbjct: 322 LVGALGLLFSAVIILGMLGGFGATLTLPGIAGLVLTIGAAVDGNVISFERIKEELQRGKG 381

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           +  S+  G+  + + I D N   L++ + L+ +  G V+GFA+T+ + ++ S F+ +   
Sbjct: 382 IKNSIGAGYEHSTAAILDVNAAHLLSAMALYNYSTGPVKGFAVTLIIGVIASTFSNLVFA 441

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
           +  M ++ + +   S  +             AI F++A       S+L ++    +L   
Sbjct: 442 KWFMEWLAQRRPNMSAPMR--------IKQTAIDFIKAAPLVTTASVLIALAGAGILAVK 493

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
           GLNYG+DF  G  + V A   V    +R+ +    +  IS QN   +++ +         
Sbjct: 494 GLNYGVDFTSGTTMTVRAPAAVTTEQIRTAVTGAGVSKISPQNATIQRDVVPGQPGTQYT 553

Query: 628 SVAQTRVLEMVKKKITEIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                     +      I     + + +TE VGP + REL  K I  V++    +L+Y+ 
Sbjct: 554 VKVPELNNTELTTISAAIGQVGNAEVLSTETVGPAVGRELTDKTIAAVLLGLGLILVYVG 613

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            RF +   LG+I   + D+   LG F+L G+EF + +VAA+LTLIGYS+ND ++V DR+R
Sbjct: 614 FRFDFVMGLGSILAAVHDVAIALGLFSLLGLEFTIASVAALLTLIGYSLNDSIIVSDRIR 673

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +N++      S+R +++ SIN+TL R++ TS++  + ++ + ++GG V+  F++ +  GI
Sbjct: 674 ENLREM-RGKSYRQIVNTSINQTLSRTIMTSISTMLPLVSLLIFGGPVLRDFSLILLIGI 732

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           +V   SSI+I AP+++F+ +W+ +  
Sbjct: 733 LVGTYSSIYIVAPLVVFLEEWKVRRK 758



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/227 (8%), Positives = 62/227 (27%), Gaps = 7/227 (3%)

Query: 24  PNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           P   P   L  +        ++LGLDL+GG  + L  +        L      + + +  
Sbjct: 50  PWQHPDQPLSLWNDKF--QFMTLGLDLKGGLRIELAPEGGPATKEELDRVKTVIENRINA 107

Query: 84  EGIGVFSMRQ-IQNKITLSFADSRFK--ENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
            G+   ++      ++ +    +     +   + +    +     +  + + +  +    
Sbjct: 108 LGVAEPTVTVAGGKRVVVEIPGATPAVQQQAREIIQRTARLEFRIVQDNAQPDPELAQKN 167

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
              +      +    +    E           Q G    +                ++ +
Sbjct: 168 PRSN--GYSLDQLGPVQATGEIIASAQAATDPQTGRWVVSFTNTDKGAQTFGDFTGKNVN 225

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           +L  ++      S   +     +   + G     ++     +++   
Sbjct: 226 KLMAVVLDDQIQSVATIQQRLFRDVQISGNFDAEEASQLALVLKSGA 272


>gi|124002617|ref|ZP_01687469.1| SecDF [Microscilla marina ATCC 23134]
 gi|123991845|gb|EAY31232.1| SecDF [Microscilla marina ATCC 23134]
          Length = 993

 Score =  327 bits (837), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 221/841 (26%), Positives = 387/841 (46%), Gaps = 80/841 (9%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVN 123
           V+  +    + LR  + K G+   ++++     +I +        E +   ++   +   
Sbjct: 151 VDEGIDRAFEILRRRIDKFGVANPNIQKLPGSGRIMIELPGVDNPERVRKLISGVAKLEF 210

Query: 124 SKLNV-----------------------------DPKKNLLVTTTEKEISIVLSQNNIDQ 154
            +L                                  +  + T  + + +++++ +   Q
Sbjct: 211 WELYELNEIALSFSQLNQYMTKLEKAAQKTTGDSTKTETKVDTAKKTDDNLLVAGDTTAQ 270

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM-- 212
                 E S+     + D      +  ++  + +       +      +Q+    A++  
Sbjct: 271 ETDST-ENSLVAGGTKTDSSKTDSANTKKDTAKKADTAKKKDVKKDTTQQIGSKFARLFK 329

Query: 213 -----SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV--------------------EDKV 247
                    V        ++      R   GN                          K 
Sbjct: 330 NNGRNYAALVKDTAEINSYLRRPEVRRMFKGNALFFWDVKPDANGLLSLHIAKNTRGGKA 389

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            + G  +  A   FD  + +P V +  +++G   + ++TR N+G+ +A+VLDG V +AP 
Sbjct: 390 PLEGDVVVDARQEFDQNS-QPEVSMRMNQLGTNEWKKLTRANVGRRVAIVLDGNVYSAPT 448

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   IPSG + ISG+F+IE A  LA +L+AG LP  + IVEE  VG  LG  SI +G  +
Sbjct: 449 VQNEIPSGNSSISGSFSIEEAKDLANILKAGKLPAPVRIVEEAIVGPSLGQKSINQGLQS 508

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           ++ GL L+V+FMI+ Y   G +A+ ++  N+   + +L+  GA LTLP IAGIVL IG++
Sbjct: 509 MLVGLGLVVVFMILYYKLGGAIANVALLANIFFIVGILAQFGAVLTLPGIAGIVLTIGMS 568

Query: 428 VDSNILVNERIREENRKNQSVF--CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           VD+N+L+ ERIREE R+ Q+V    ++ +G+ +AYS+I D+N+T  +   +L+ FG G V
Sbjct: 569 VDANVLIYERIREELRREQAVKLPMAIKLGYEKAYSSIIDANVTTFLIGAILYSFGSGGV 628

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           +GFA+T+ + I  S+F+AI I R ++  I      ++I  +             IQF++ 
Sbjct: 629 KGFAVTLMIGIACSLFSAIFITRLIIEAI-SRGGKRNIGFSSFIPT---MGKANIQFIKL 684

Query: 546 RFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
           R      S  F  C I  +  +G  N G+DFKGG    V   + V  +  R  L     G
Sbjct: 685 RKKAYMGSAAFITCGIIAMVINGGLNLGVDFKGGRSYVVKFEKSVAATDARQALTDSFKG 744

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK----KKITEIVPLSTIQNTEIVGPK 660
            +  + F       V   Y   D   +             K        +++++  VG  
Sbjct: 745 GLEVKTFGASNQIKVTTSYLIDDESQEADKKVKAMVLNGLKKFNDGKAPSVESSSKVGST 804

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL-----F 714
           I+ ++       V+ S + + IYI +RF+ W +  GAI  L  D+   L  F++     F
Sbjct: 805 IADDIRNTAQTAVLFSLVVIFIYIVVRFRRWQYGAGAIAALFHDVLFVLSAFSIAHLLGF 864

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK---LYTTSISFRDLIDKSINETLGR 771
            +E +   +AA+LT+IGYS+ND VVV+DR+R+  +         +F ++++ +IN TL R
Sbjct: 865 TLEIDQVFIAAILTVIGYSINDTVVVFDRIREEDEDNTKGHRGQAFSEVLNNAINNTLSR 924

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +V TS    + VL + + GG V+  F+  +  G++V   SS+FIA+P++L  Y+ + K  
Sbjct: 925 TVMTSTTTLVVVLTLFLAGGEVLRGFSFALLIGVLVGTYSSVFIASPVVLDFYNMQQKKD 984

Query: 832 R 832
           +
Sbjct: 985 K 985



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 16/186 (8%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF-LKKEGIGVFSMRQIQNKIT 99
           +  +SLGLDL+GG H+V+EV   + +       +    +  L++      + ++   K  
Sbjct: 49  QKELSLGLDLQGGMHVVVEVSPIEIIKALSGSSASVKLNRSLQEAQKAQANSQE---KFI 105

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
             F  +  K    DK+                +  + T +  +  I      +D+     
Sbjct: 106 FLFQKAFDKLYPNDKLADIFA-------SSANREKIRTNSTNDEVIAFIGKEVDEG---- 154

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
           I+++ EI+R+RID+ G++   IQ+L  S RI+I+LPG  +P R+R+L+   AK+ F ++ 
Sbjct: 155 IDRAFEILRRRIDKFGVANPNIQKLPGSGRIMIELPGVDNPERVRKLISGVAKLEFWELY 214

Query: 219 PNNSKK 224
             N   
Sbjct: 215 ELNEIA 220


>gi|306843790|ref|ZP_07476388.1| protein-export membrane protein SecD [Brucella sp. BO1]
 gi|306275868|gb|EFM57584.1| protein-export membrane protein SecD [Brucella sp. BO1]
          Length = 758

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 30  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 85  YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 144

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALAINIIILTAVLSLI 324

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736



 Score = 97.5 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 5   SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 65  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 123 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238

Query: 243 VE 244
            +
Sbjct: 239 FD 240


>gi|254706899|ref|ZP_05168727.1| SecD/SecF family protein-export membrane protein [Brucella
           pinnipedialis M163/99/10]
          Length = 775

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 397/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ L M++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLVMVLSYGILGVIALVALVVNIIILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753



 Score = 97.8 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|294852246|ref|ZP_06792919.1| SecD/SecF family protein-export membrane protein [Brucella sp. NVSL
           07-0026]
 gi|294820835|gb|EFG37834.1| SecD/SecF family protein-export membrane protein [Brucella sp. NVSL
           07-0026]
          Length = 775

 Score =  327 bits (837), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 341

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 342 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 401

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 402 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 461

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 462 K---LVPTVTHISFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 518

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 519 DANLEDINERLAELNIDSARVLPAKSLRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 575

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 576 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 635

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 636 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 694

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 695 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 753



 Score = 97.8 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|297621893|ref|YP_003710030.1| putative bifunctional preprotein translocase subunit SecD/SecF
            [Waddlia chondrophila WSU 86-1044]
 gi|297377194|gb|ADI39024.1| putative bifunctional preprotein translocase subunit SecD/SecF
            [Waddlia chondrophila WSU 86-1044]
          Length = 1525

 Score =  327 bits (836), Expect = 7e-87,   Method: Composition-based stats.
 Identities = 201/852 (23%), Positives = 358/852 (42%), Gaps = 69/852 (8%)

Query: 42   NRISLGLDLRGG--SHLVLEVDEDDFV--NGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
              +  GLDL GG    + L       V     L+   +EL + + K G+   ++R   N 
Sbjct: 672  KILKWGLDLSGGKTVRIGLRDQSGRIVTNPEDLKQAVNELYTRINKMGVAERTIRIENNN 731

Query: 98   ITLSFADSR-----FKENIAD----KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            I L F  S+          +      V       NS L  +  + L     E  ++    
Sbjct: 732  IILDFPGSQAFSASELVKASAMYFHIVNEKFSQFNSSLREEVNQFLQNVWNEAVVTNRKD 791

Query: 149  QNNIDQVISHAIE---QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP-SRLRQ 204
              +I+++    +    Q+ E+   R +          R+ + R  ++     D  S +  
Sbjct: 792  AQSINEIAWEQMGGNLQTGEVGEPRSEVARTLYENGLRIANPRTTVKSAAFDDTHSSIAM 851

Query: 205  LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
            L G        +  P               ++    Y   +   +S        A+    
Sbjct: 852  LRGDDYSEWNGQTHPLLVVFSNFALEGSSLENVNVGYDPSEGNILSFGVKRSYDASHPRA 911

Query: 265  THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI-----PSGKAQI 319
               P  D                              V+    +  +          A I
Sbjct: 912  GSSPRDDFYSWTSQFSEDKIAGTAKEAYSQGRGWRMAVILNDHVITSPNLRAALRDAATI 971

Query: 320  SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
            SG F+      LAA L+AGSL     I+ E+N+ A+LG +   +G  A   GLVL+   M
Sbjct: 972  SGRFSQREINQLAADLKAGSLSFTPKILSEQNISAELGKEERTRGILAACIGLVLVGATM 1031

Query: 380  IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
            I  Y   G+VA  ++  N+++   +L  LGA LTLP IAGIVL IG+AVD+N+LV ER+R
Sbjct: 1032 IGYYRFAGVVATCAVLFNLLIMWGVLQNLGAALTLPGIAGIVLTIGMAVDANVLVFERVR 1091

Query: 440  EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
            EE   +  +  ++  G+ +A+S I DSNIT +IA ++L  F  G ++GFA+T+ + ++ S
Sbjct: 1092 EEFAVSGRIASAIQAGYRKAFSAIVDSNITTIIAALILIQFDSGPIKGFAVTLIIGLVSS 1151

Query: 500  MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
            MFTA+ + R      ++  K K +++        +     I F+      + IS    + 
Sbjct: 1152 MFTALFMTRYFFAGWVKNPKNKKLNMAN------LFGGTNIDFLSYTKSAMIISAAIILV 1205

Query: 560  SICLLFTHGLNY-GIDFKGGIQLGVLANR----------------------PVDLSVVRS 596
               L +T      G+DF GG  L V                            +   +R 
Sbjct: 1206 GGYLFWTQKNTMFGMDFTGGYSLNVEMEDTLGEEEGIYKEKASAAMLANGAHANSFQIRQ 1265

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ------------TRVLEMVKKKITE 644
                 Q+        + + +    +     D                 + LE     I +
Sbjct: 1266 LSRPNQLRIQLSLGMEEKGSPFYGMPEATQDDETTYDYEKDPRITWVVKALESEGLNIQQ 1325

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
               ++  +   ++  + S  +     + +  + I++L+YI +RF++ +A+GA+  L+ D+
Sbjct: 1326 SDLVNLDKQWSMMSGQFSETMRNNAFLALTFALISILLYITVRFEFKYAIGAVIGLVHDV 1385

Query: 705  TKTLGFFALFGI-----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
              T+G +A+F       + +L  V A++T+IGYS+ND ++++DR+R+++K+    +SF +
Sbjct: 1386 LITMGIYAIFHAIGFPVQIDLVVVGAIMTIIGYSLNDTIIIFDRIREDLKILRK-LSFAE 1444

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +I+ ++N TL R++ TS    + +L + + GG  I  F++ M  G+++   SS+FIA P+
Sbjct: 1445 VINHALNVTLSRTIMTSGTTLVVLLSLVLLGGHSIFDFSLVMTIGVIIGTLSSLFIAGPV 1504

Query: 820  LLFIYDWRAKNA 831
            +LF ++   K  
Sbjct: 1505 MLFFHNREEKIK 1516



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 76/180 (42%), Gaps = 8/180 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + + +  ++ +E   +GI+   I  + +   +   +++   + A   ++ ++    G   
Sbjct: 1000 SEQNISAELGKEERTRGILAACIGLVLVGATMIGYYRF-AGVVATCAVLFNLLIMWGVLQ 1058

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              G    L  +A ++  IG +V+  V+V++R+R+   +          I     +     
Sbjct: 1059 NLGAALTLPGIAGIVLTIGMAVDANVLVFERVREEFAVSGR---IASAIQAGYRKAFSAI 1115

Query: 773  VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V +++   I+ L +  +    I  FA+ +  G+V    SS+F A  +  + +    KN +
Sbjct: 1116 VDSNITTIIAALILIQFDSGPIKGFAVTLIIGLV----SSMFTALFMTRYFFAGWVKNPK 1171


>gi|34397702|gb|AAQ66763.1| protein-export membrane protein SecD/protein-export membrane
           protein SecF [Porphyromonas gingivalis W83]
          Length = 944

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 213/826 (25%), Positives = 374/826 (45%), Gaps = 57/826 (6%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113
            D    +        +     LR+ +   G+   ++++   Q +I +     +  E +  
Sbjct: 119 ADVVRLLKEKYNSAVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRT 178

Query: 114 KVTLFLQGVNSKL-----------------------NVDPKKNLLVTTTEKEISIVLSQN 150
            +         +                        N D        TT+   +   S  
Sbjct: 179 LLQRSANLQFWRTYKFEEVSGDLIAANDRLSELAMNNTDATPETEPATTDSVAATADSAA 238

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGI----SESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                 S  + Q       R D +             +G  R        +   +   L 
Sbjct: 239 VQAVADSATVAQKEAKDATRKDALFSLLTPVNRGGAVVGVARRANMAQISEMLQQAHDLK 298

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT- 265
            T   + F                                 ++ G  +  A ++      
Sbjct: 299 VTREDVLFLWGAKAIEDPETKKETDLYELYAIRT-NRTGDPDLGGDVVTSAKSDIQNDFG 357

Query: 266 -HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +P+V ++ +E GAR++  +T+DN+G+ +A+VLDG V +AP +N  I  G++QISG+FT
Sbjct: 358 RSEPIVSMTMNEEGARKWARITKDNVGRAIAIVLDGVVYSAPNVNDEITGGRSQISGHFT 417

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           +E AG LA +L +G +   ++I +E  +G  LG++SI  G  + +  LV+++ +M + YG
Sbjct: 418 VEEAGDLANVLNSGKMDATVSIEQENVIGPTLGAESIKAGFLSFLLALVILMCYMCLAYG 477

Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              GL+A+ ++ +N   TL +L+   A LTL  IAG+VL +G+AVD+N+L+ ERI+EE R
Sbjct: 478 FLPGLIANGALIVNSFFTLGVLASFHAVLTLSGIAGLVLTLGMAVDANVLIFERIKEELR 537

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             ++   ++  G+  A+S IFDSN+T +I  ++LF +G G +RGFA T+ + ++ S  TA
Sbjct: 538 AGKTPIRAVTDGYGNAFSAIFDSNVTTIITGIILFLYGTGPIRGFATTLIIGLIASFITA 597

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + + R +   + +  ++  I         L+    +   +  R  G  I ++  +  +  
Sbjct: 598 VFLTRIVFEKLAKKGRLDKITFTTSITRNLL-VNPSYNILGKRKTGFIIPVIIIVLGLIA 656

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            FT GLN GI+F GG    V  ++PV    VRS L S     +   +   E   +     
Sbjct: 657 SFTIGLNRGIEFSGGRNYVVKFDQPVSSEAVRSALSSPLQEKVLVTSIGTEGTEVRISTN 716

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-----------NTEIVGPKISRELIRKGIVG 672
                 ++    E+  K    +    T Q           +++ V P +S ++ R  I  
Sbjct: 717 YKIQEESEETEAEITDKLYQSLKGFYTQQPTADQFLDNIISSQKVSPSMSSDITRGAIWA 776

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725
           V++S I M IYI IRF+   F+ G   ++       +  +AL      F +E +   +AA
Sbjct: 777 VLLSMIFMAIYILIRFRDISFSAGVFVSVAATTFCIIALYALLWKILPFTMEIDQNFIAA 836

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +L +IGYS+ND VVV+DR+R+ MKLY     +  +I+ ++N TLGR++ TS+  FI +L 
Sbjct: 837 ILAIIGYSLNDTVVVFDRIRETMKLYPNRDRY-QVINDALNSTLGRTLNTSLTTFIVMLV 895

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++GG+ + SF   +  GIV+   S++F+A P+   I   +   A
Sbjct: 896 IFIFGGATMRSFTFSILLGIVIGTYSTLFVATPLAYEIQKRKLNKA 941



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/191 (22%), Positives = 81/191 (42%), Gaps = 16/191 (8%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
               +I LGLDL+GG +++L+++  D +        D       K         +  + I
Sbjct: 27  AQAQQIGLGLDLKGGMNVILKLNASDLLRNLSNKSLDP---NFNKALENAAKSTEQSDFI 83

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
            +   + R  +          +      + D +  +   +T+ ++  +L +       + 
Sbjct: 84  DIFVKEYRKLDPNG-------RLAVIFGSGDLRDQITAKSTDADVVRLLKEKY-----NS 131

Query: 159 AIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           A+E S  ++R RID  G+    +QR  G  RIL++LPG +DP R+R LL  +A + F + 
Sbjct: 132 AVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRTLLQRSANLQFWRT 191

Query: 218 LPNNSKKGFMF 228
                  G + 
Sbjct: 192 YKFEEVSGDLI 202


>gi|330996513|ref|ZP_08320395.1| export membrane protein SecD [Paraprevotella xylaniphila YIT 11841]
 gi|329573069|gb|EGG54688.1| export membrane protein SecD [Paraprevotella xylaniphila YIT 11841]
          Length = 1015

 Score =  326 bits (835), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 208/841 (24%), Positives = 375/841 (44%), Gaps = 78/841 (9%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122
            V   +    + LR+ + + G+   +++       +I +     +  E +   +       
Sbjct: 173  VQSAIDNSYNVLRTRIDRFGVVQPNIQTLEGQMGRIMVEMPGVKEPERVRKLLQGSANLE 232

Query: 123  NSKLNVDPK----------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
              +     +                  +    T K  +  +++    + +          
Sbjct: 233  FWETYNTEEIIPFLATLDTRLAAEHAAIAENDTVKADTTAMAELTPAEKVDATDSTKKAP 292

Query: 167  IRQRIDQIGISESTIQ-----------------------RLGSHRILIQLPGEQDPSRLR 203
            ++     +  +  T                           G    ++     +D + + 
Sbjct: 293  VKDLAAALKGNSGTPAEKAGAAVDEQAMKNHPLASVLQLAQGPMGCVVGYASWRDTATVN 352

Query: 204  QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS----DGNQYLVEDKVEISGIHLNGATA 259
            + + +                    G   + D              +  + G  +     
Sbjct: 353  RYITSAVAKEVLPSDLKLYWGVKPVGSGNMGDIFELYAIKITERNGRAPLEGDVVTE-AK 411

Query: 260  NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
            +   +  +P V ++ +  GARR+  +T+ N+ + +A+VLDG V +AP +   I  G + I
Sbjct: 412  DDYEQNGRPCVSMTMNSDGARRWAALTKKNVKRAIAIVLDGYVYSAPTVQNEITGGVSSI 471

Query: 320  SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
            +G+FT+E    LA +L  G +P   +IV E+ VG  LG +SI +G  + V   +L++++M
Sbjct: 472  TGHFTLEDTRDLANVLNTGKMPAPAHIVSEQFVGPTLGQESINQGITSFVIAFILLMIYM 531

Query: 380  IVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438
              +YG   G+VA+ ++ LN   TL +L+   A LT+  IAG+VL +G+AVD+N+L+ ER 
Sbjct: 532  CGMYGLVPGMVANGALILNFFFTLGVLTSFQAALTMSGIAGMVLSLGMAVDANVLIYERT 591

Query: 439  REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
            +EE R  ++V  +L  G+S A+S IFDSN+T++I  ++L+ FG G +RGFA T+ + IL+
Sbjct: 592  KEELRAGKAVKQALSDGYSNAFSAIFDSNLTSIITGIILYNFGTGPIRGFATTLIIGILV 651

Query: 499  SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
            S FTA+ + R +    +   K  ++          + D    +FM A      +  +  +
Sbjct: 652  SFFTAVFLTRIVYEHFLNKDKWMNLTFTTTLSRKFLRD-THYKFMSAYKKSFSVFGVLLL 710

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I  LF  GL+ GIDF GG    V+  + V+   VR+ L++            G  +  
Sbjct: 711  IGIASLFVRGLSKGIDFTGGRNFVVVFEKQVEPETVRTLLQNKFGDANIQVIALGTDHQT 770

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKI---------------------TEIVPLSTIQNTEIV 657
            VR+          T V   ++  +                      +     +I ++E V
Sbjct: 771  VRISTNYRIDEEGTDVDSEIESTLFETLKGGGLLSSDLDLQTFINRDERAGGSIISSEKV 830

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL--- 713
            GP ++ ++    IV V+++ IA+ +YI +RF+   F++GA+  L +D    +G +++   
Sbjct: 831  GPSVAEDITYGAIVSVVLALIAIFLYILLRFRNVAFSVGAVVALTVDTLLIIGAYSICWG 890

Query: 714  ---FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               F +E + T + AVLT IGYS+NDKVVV+DR+R+ + LY      + L + S+N TL 
Sbjct: 891  WMPFSLEIDQTFIGAVLTAIGYSINDKVVVFDRIREFLHLYPNR-DRQRLFNDSLNTTLT 949

Query: 771  RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            R++ TS+   + +L +   GG  I SFA  M  G+V+   SSIF+AAP+       R K 
Sbjct: 950  RTINTSLTTLVVLLCIFFLGGDSIRSFAFAMILGVVIGTCSSIFMAAPVAFLTMGQRIKE 1009

Query: 831  A 831
             
Sbjct: 1010 N 1010



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 92/251 (36%), Gaps = 45/251 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSA 38
           M+N  ++ +   ++  + +     +F+                          +   P  
Sbjct: 1   MQNKGFVKVFALLLTLVCVFYLSFSFVTTYQMNKVDEITKTQGEEVGAHYLDSVMNNPVW 60

Query: 39  M--------PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90
           +         +  ISLGLDL+GG +++LEV   + V        D   +          +
Sbjct: 61  LGAYSLKDCREMEISLGLDLKGGMNVILEVSVPEVVKALADHKEDPAFNK-AVAKAAEGA 119

Query: 91  MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
                + ITL   +          +               K  +   +++ E+  VL   
Sbjct: 120 KNSQSDFITLFVKE-------YKTLAPDGNLAELFATQQLKGKVTTKSSDSEVEKVLRAE 172

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGT 208
                +  AI+ S  ++R RID+ G+ +  IQ       RI++++PG ++P R+R+LL  
Sbjct: 173 -----VQSAIDNSYNVLRTRIDRFGVVQPNIQTLEGQMGRIMVEMPGVKEPERVRKLLQG 227

Query: 209 TAKMSFHKVLP 219
           +A + F +   
Sbjct: 228 SANLEFWETYN 238


>gi|258648881|ref|ZP_05736350.1| protein-export membrane protein SecD/SecF [Prevotella tannerae ATCC
           51259]
 gi|260850904|gb|EEX70773.1| protein-export membrane protein SecD/SecF [Prevotella tannerae ATCC
           51259]
          Length = 958

 Score =  326 bits (835), Expect = 9e-87,   Method: Composition-based stats.
 Identities = 205/811 (25%), Positives = 362/811 (44%), Gaps = 63/811 (7%)

Query: 60  VDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQ-----IQNKITLSFADSRFKEN 110
                 +   +        + +RS + + G+   +++         +I +     +  E 
Sbjct: 160 AQVQKALEEEVDAAVANSNEVVRSRIDRFGVAQPNIQILRGKGQIGQIMVEMPGIKEPER 219

Query: 111 IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
           +   +         +                     +++       +   +QS + + Q 
Sbjct: 220 VRKLLQGSANLEFWETY--------TLDKINAALQSINEIGTASDSTQQQKQSGKPLFQM 271

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
           + Q   +        +             S   +       +    V P   +   ++ +
Sbjct: 272 LSQQNTNPQGCIVGYAAPKDTAAIDNIIYSEAAKSKLPADLVLHWSVKPEMGQAFALYAL 331

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
           R              +  + G  +  A  +FD   H+P+V ++    G+R +  +T+ N+
Sbjct: 332 R----------SNGGQPALQGDVIADAKDDFDQY-HRPIVSMTMTNDGSREWANITKKNL 380

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
            +P+A+VLDG V +APVI   I  G +QISG+FT +    LA +L++G +P   NIV+E 
Sbjct: 381 HQPVAIVLDGYVYSAPVIQNEINGGTSQISGHFTTDDTRDLANVLKSGKMPAPTNIVQEE 440

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLG 409
            VG  LGS SI  G  + +   +L+++FM   YG   G+VA+ ++ LN   T  +L    
Sbjct: 441 TVGPSLGSASIQAGLYSCIVAFILLMIFMCCYYGIIPGMVANIALVLNFFFTFGVLVSFQ 500

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           A LT+  IAG+VL +G+AVD+N+L+ ER +EE R  +++  +L  G+  A+S IFDSN+T
Sbjct: 501 AALTMSGIAGLVLSLGMAVDANVLIYERTKEELRNGKNIKSALAAGYGNAFSAIFDSNLT 560

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           ++I  ++L+ FG G +RGFA+T+G+ I  S FTA+ I R +    + +++   +  +   
Sbjct: 561 SIITAIILYNFGTGPIRGFALTLGIGICASFFTAVWISRMIYERQMNHERWLGLTFSTPL 620

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               +      + M+     + +  L  +  I  L T GL+ GIDF GG    +      
Sbjct: 621 TRNFL-TNAHFRLMKNAPKAMIVFGLIVLVCIGSLATRGLSKGIDFTGGRNFVIEFEDRA 679

Query: 590 --------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL------ 635
                    +  V    +              ++   +   Y      A    +      
Sbjct: 680 ITPEKVDAAVERVIKAKDPNATISAIEVVTAQKRAVRLTTNYMIDSDAADADEVVEKTVY 739

Query: 636 -----------EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                      +    K  E     +I + + VGP ++ ++ +  I+ VI+S IA+ +YI
Sbjct: 740 EALKQGKLITADYKTFKDRENRTGGSIVSAQKVGPAVAADMAKGAIISVILSLIAIFVYI 799

Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDK 737
             RF+   F++G++  L +D    +G +++      F +E + T + AVLT IGYS+NDK
Sbjct: 800 LARFRNVAFSIGSVLALTVDTLIIVGMYSICWGWMPFSLEVDQTFIGAVLTAIGYSINDK 859

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           VVV+DR+R+N+ LY    +   L + S+NETL R++ TS    + +L +   GG  I SF
Sbjct: 860 VVVFDRIRENLGLYPKRET-ERLFNDSLNETLARTIMTSATTLLVLLCIFFLGGDSIRSF 918

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           A  M  G++    SSIF+AAPI       + 
Sbjct: 919 AFAMILGVIFGTLSSIFLAAPIAFRTLGKKR 949



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 63/406 (15%), Positives = 135/406 (33%), Gaps = 50/406 (12%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ---------------------SMLDRFPSAM 39
           M+N  ++  +  ++  I L     +F+                            + +  
Sbjct: 1   MQNKGFVKAIAILLTLICLFYFSFSFVTNHYERKAEAMGPVAGKAYLDSMMNEKVYLNWK 60

Query: 40  PKN-----RISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRS-FLKKEGIGVFSMR 92
                   +I LGLDL+GG +++LEV   D V                + +   G    +
Sbjct: 61  TLKECQSLQIGLGLDLKGGMNVILEVSVPDVVKNLAGDNAKAPAFQKAVDQAREGYK--K 118

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
              + + L   D            LF   +        +KN+   +++ +      Q  +
Sbjct: 119 GDGDFVELFVKDYAEANGAGKLGALFAARLK-------EKNITFNSSDAQ-----VQKAL 166

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQR----LGSHRILIQLPGEQDPSRLRQLLGT 208
           ++ +  A+  S E++R RID+ G+++  IQ         +I++++PG ++P R+R+LL  
Sbjct: 167 EEEVDAAVANSNEVVRSRIDRFGVAQPNIQILRGKGQIGQIMVEMPGIKEPERVRKLLQG 226

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           +A + F +    +     +  +    +  G       + + SG  L    +  +      
Sbjct: 227 SANLEFWETYTLDKINAALQSI----NEIGTASDSTQQQKQSGKPLFQMLSQQNTNPQGC 282

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           +V  +  +  A     +  +     L   L       P + QA      + +G       
Sbjct: 283 IVGYAAPKDTAAIDNIIYSEAAKSKLPADLVLHWSVKPEMGQAFALYALRSNGGQPALQG 342

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
            ++A          +  +             +I K        +VL
Sbjct: 343 DVIADAKDDFDQYHRPIVSMTMTNDGSREWANITKKNLHQPVAIVL 388


>gi|326538630|gb|ADZ86845.1| protein-export membrane protein SecD [Brucella melitensis M5-90]
          Length = 761

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 33  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 87

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 88  YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 147

Query: 232 ---FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
              +  D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 148 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 207

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 208 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 267

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 268 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 327

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 328 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 387

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 388 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 447

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 448 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 504

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 505 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 561

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 562 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 621

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 622 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 680

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 681 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 739



 Score = 96.3 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 8   SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 67

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 68  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 125

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 126 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 181

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 182 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 241

Query: 243 VE 244
            +
Sbjct: 242 FD 243


>gi|291296314|ref|YP_003507712.1| protein-export membrane protein SecD [Meiothermus ruber DSM 1279]
 gi|290471273|gb|ADD28692.1| protein-export membrane protein SecD [Meiothermus ruber DSM 1279]
          Length = 759

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 215/699 (30%), Positives = 358/699 (51%), Gaps = 30/699 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLRQLLGTT 209
              V    ++ +  +I  R++ IG++E  +Q  G+ RI+++LP   +    R   L+G T
Sbjct: 64  DPSVAKTELDVARTVIENRVNAIGVAEPLVQVQGNDRIIVELPGLKQDQQERALGLIGQT 123

Query: 210 AKMSFHKVLPNNSKK--------------GFMFGVRFLRDSDGNQYLVE--DKVEISGIH 253
           AK+ F  V    +                          + + N Y +E      ++G  
Sbjct: 124 AKLEFRIVNQGATGTTVAQINEQLRSSGLSGAALAARRAELEKNLYKLEDLGPPLLTGSD 183

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
           L  A A+FD    +P VD+ F   GA++F EVTR N+G+ LAVVLDG+V TAP I QAI 
Sbjct: 184 LRTANASFDQFG-RPQVDMEFTPEGAKKFEEVTRANVGRQLAVVLDGKVYTAPSIRQAIA 242

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
            G+A I G   ++ A  +A +LR+GSLP+KL + E R +G  LG D+I  G  A + G V
Sbjct: 243 GGRAVIEGLSGVQEASDIALVLRSGSLPVKLEVAETRAIGPTLGQDAINAGIQAGIIGTV 302

Query: 374 LIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           L+ + +   Y    GLVA   +    IL LA +SLLGATLTLP IAG++L +G AVD N+
Sbjct: 303 LLFILIFAYYGFWMGLVAALGLIYTAILLLASISLLGATLTLPGIAGLILTLGAAVDGNV 362

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L  ERI+EE +  +    ++  GFS +  TI D N+  L+A   L+ +  G VRGFA+ +
Sbjct: 363 LSFERIKEELKMGKKFRQAIPGGFSHSIITILDVNMCHLLAAAALYQYSTGPVRGFAVML 422

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
            L ++ S+F+ +   R ++  I    +++                  I F+    +    
Sbjct: 423 ALGVVTSVFSNLVFSRWLLELIGDRCEVR---------PPYWLWGTKIDFLGISRYVTAA 473

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S+  ++ +  ++F  G N+GIDF GG    +          +RS L++  I ++      
Sbjct: 474 SLTLAVIAAGIVFVKGFNFGIDFTGGTAFTIRVPEGTRAEQIRSFLDNAGIAELRGAESV 533

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 V            +    +  +K  +    +TI  +E VGP I  EL R  I  
Sbjct: 534 ITSLSSVNGNEFSVRVRQISEEQRIELEKKFQESLQATILQSETVGPAIGSELRRNTIFA 593

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V++    +LIY+  RF W F + ++  +  D+    G ++L G+EF++  VA +LT++G+
Sbjct: 594 VLVGLALILIYVAFRFDWVFGVASVIAVGHDVAIVAGMYSLLGLEFSIPTVAVLLTIVGF 653

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           S+ND V++ DR+R+N+K+     S+ ++++ SIN+TL R++ TS++  + +L +   GG 
Sbjct: 654 SINDSVIISDRIRENLKIM-RGRSYYEIVNASINQTLSRTLMTSLSTMLPILALLFLGGP 712

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           V+  F++ +  G VV   SSI++ + ++++      +  
Sbjct: 713 VLRDFSLAIFVGFVVGTYSSIYVVSALVVWYKTLEQRRK 751



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 9/148 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N  W  +L   +    ++     +  ++   + P       I LGLDL+GG  + L+V
Sbjct: 1   MTNRTWKAVLLIGLLLAAIVGLFRPWEARNP--QKPLLPADGLIRLGLDLQGGLRITLKV 58

Query: 61  DEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFAD--SRFKENIAD 113
            E +         L +    + + +   G+    ++   N +I +         +E    
Sbjct: 59  AEPNPDPSVAKTELDVARTVIENRVNAIGVAEPLVQVQGNDRIIVELPGLKQDQQERALG 118

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
            +    +     +N       +    E+
Sbjct: 119 LIGQTAKLEFRIVNQGATGTTVAQINEQ 146


>gi|260563917|ref|ZP_05834403.1| vacuolar H+-transporting two-sector ATPase [Brucella melitensis bv.
           1 str. 16M]
 gi|260153933|gb|EEW89025.1| vacuolar H+-transporting two-sector ATPase [Brucella melitensis bv.
           1 str. 16M]
          Length = 758

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 30  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 85  YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 144

Query: 232 ---FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
              +  D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 324

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736



 Score = 95.5 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 90/242 (37%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNFL +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 5   SRWKSALIWLAVLVSLIIASPNFLSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 65  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 123 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238

Query: 243 VE 244
            +
Sbjct: 239 FD 240


>gi|161579529|ref|NP_905864.2| bifunctional preprotein translocase subunit SecD/SecF
           [Porphyromonas gingivalis W83]
          Length = 981

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 213/826 (25%), Positives = 374/826 (45%), Gaps = 57/826 (6%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113
            D    +        +     LR+ +   G+   ++++   Q +I +     +  E +  
Sbjct: 156 ADVVRLLKEKYNSAVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRT 215

Query: 114 KVTLFLQGVNSKL-----------------------NVDPKKNLLVTTTEKEISIVLSQN 150
            +         +                        N D        TT+   +   S  
Sbjct: 216 LLQRSANLQFWRTYKFEEVSGDLIAANDRLSELAMNNTDATPETEPATTDSVAATADSAA 275

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGI----SESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                 S  + Q       R D +             +G  R        +   +   L 
Sbjct: 276 VQAVADSATVAQKEAKDATRKDALFSLLTPVNRGGAVVGVARRANMAQISEMLQQAHDLK 335

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT- 265
            T   + F                                 ++ G  +  A ++      
Sbjct: 336 VTREDVLFLWGAKAIEDPETKKETDLYELYAIRT-NRTGDPDLGGDVVTSAKSDIQNDFG 394

Query: 266 -HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +P+V ++ +E GAR++  +T+DN+G+ +A+VLDG V +AP +N  I  G++QISG+FT
Sbjct: 395 RSEPIVSMTMNEEGARKWARITKDNVGRAIAIVLDGVVYSAPNVNDEITGGRSQISGHFT 454

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           +E AG LA +L +G +   ++I +E  +G  LG++SI  G  + +  LV+++ +M + YG
Sbjct: 455 VEEAGDLANVLNSGKMDATVSIEQENVIGPTLGAESIKAGFLSFLLALVILMCYMCLAYG 514

Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              GL+A+ ++ +N   TL +L+   A LTL  IAG+VL +G+AVD+N+L+ ERI+EE R
Sbjct: 515 FLPGLIANGALIVNSFFTLGVLASFHAVLTLSGIAGLVLTLGMAVDANVLIFERIKEELR 574

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             ++   ++  G+  A+S IFDSN+T +I  ++LF +G G +RGFA T+ + ++ S  TA
Sbjct: 575 AGKTPIRAVTDGYGNAFSAIFDSNVTTIITGIILFLYGTGPIRGFATTLIIGLIASFITA 634

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + + R +   + +  ++  I         L+    +   +  R  G  I ++  +  +  
Sbjct: 635 VFLTRIVFEKLAKKGRLDKITFTTSITRNLL-VNPSYNILGKRKTGFIIPVIIIVLGLIA 693

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            FT GLN GI+F GG    V  ++PV    VRS L S     +   +   E   +     
Sbjct: 694 SFTIGLNRGIEFSGGRNYVVKFDQPVSSEAVRSALSSPLQEKVLVTSIGTEGTEVRISTN 753

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-----------NTEIVGPKISRELIRKGIVG 672
                 ++    E+  K    +    T Q           +++ V P +S ++ R  I  
Sbjct: 754 YKIQEESEETEAEITDKLYQSLKGFYTQQPTADQFLDNIISSQKVSPSMSSDITRGAIWA 813

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725
           V++S I M IYI IRF+   F+ G   ++       +  +AL      F +E +   +AA
Sbjct: 814 VLLSMIFMAIYILIRFRDISFSAGVFVSVAATTFCIIALYALLWKILPFTMEIDQNFIAA 873

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +L +IGYS+ND VVV+DR+R+ MKLY     +  +I+ ++N TLGR++ TS+  FI +L 
Sbjct: 874 ILAIIGYSLNDTVVVFDRIRETMKLYPNRDRY-QVINDALNSTLGRTLNTSLTTFIVMLV 932

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++GG+ + SF   +  GIV+   S++F+A P+   I   +   A
Sbjct: 933 IFIFGGATMRSFTFSILLGIVIGTYSTLFVATPLAYEIQKRKLNKA 978



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 97/254 (38%), Gaps = 41/254 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA---------------------- 38
           M+N  +++++ S +  I       +F+      +  +                       
Sbjct: 1   MQNKGFVIVITSALAIICAFYLSFSFVTNRYEKKAKAMGDVAGMAYLDSMSNEKVWFGYT 60

Query: 39  ---MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95
                  +I LGLDL+GG +++L+++  D +        D       K         +  
Sbjct: 61  LKEAQAQQIGLGLDLKGGMNVILKLNASDLLRNLSNKSLDP---NFNKALENAAKSTEQS 117

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           + I +   + R  +          +      + D +  +   +T+ ++  +L +      
Sbjct: 118 DFIDIFVKEYRKLDPNG-------RLAVIFGSGDLRDQITAKSTDADVVRLLKEKY---- 166

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
            + A+E S  ++R RID  G+    +QR  G  RIL++LPG +DP R+R LL  +A + F
Sbjct: 167 -NSAVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRTLLQRSANLQF 225

Query: 215 HKVLPNNSKKGFMF 228
            +        G + 
Sbjct: 226 WRTYKFEEVSGDLI 239


>gi|265999497|ref|ZP_05466631.2| vacuolar H+-transporting two-sector ATPase [Brucella melitensis bv.
           2 str. 63/9]
 gi|263094301|gb|EEZ18162.1| vacuolar H+-transporting two-sector ATPase [Brucella melitensis bv.
           2 str. 63/9]
 gi|326408912|gb|ADZ65977.1| bifunctional preprotein translocase subunit SecD/SecF [Brucella
           melitensis M28]
          Length = 758

 Score =  326 bits (834), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 399/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 30  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 85  YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS 144

Query: 232 ---FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
              +  D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 324

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736



 Score = 96.3 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 5   SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 65  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 123 FRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238

Query: 243 VE 244
            +
Sbjct: 239 FD 240


>gi|254718995|ref|ZP_05180806.1| SecD/SecF family protein-export membrane protein [Brucella sp.
           83/13]
 gi|306840118|ref|ZP_07472904.1| protein-export membrane protein SecD [Brucella sp. NF 2653]
 gi|306404846|gb|EFM61139.1| protein-export membrane protein SecD [Brucella sp. NF 2653]
          Length = 758

 Score =  325 bits (833), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 30  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLATTA-----NIMRQRLEELG 84

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 85  YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 144

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 324

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKQVPKRRL 444

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 678 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736



 Score = 95.9 bits (236), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 88/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   I L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 5   SRWKSALIWLAVLISLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L   ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 65  G--KTDLATTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 123 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238

Query: 243 VE 244
            +
Sbjct: 239 FD 240


>gi|260566552|ref|ZP_05837022.1| vacuolar H+-transporting two-sector ATPase [Brucella suis bv. 4
           str. 40]
 gi|260156070|gb|EEW91150.1| vacuolar H+-transporting two-sector ATPase [Brucella suis bv. 4
           str. 40]
          Length = 758

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 239/719 (33%), Positives = 398/719 (55%), Gaps = 20/719 (2%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 30  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 85  YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 144

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLI 324

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 502 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 558

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 559 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 618

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 619 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 677

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 678 TLSRTLLTSFVIFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 736



 Score = 97.5 bits (240), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 5   SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 65  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 123 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238

Query: 243 VE 244
            +
Sbjct: 239 FD 240


>gi|297565899|ref|YP_003684871.1| protein-export membrane protein SecD [Meiothermus silvanus DSM
           9946]
 gi|296850348|gb|ADH63363.1| protein-export membrane protein SecD [Meiothermus silvanus DSM
           9946]
          Length = 740

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 213/702 (30%), Positives = 355/702 (50%), Gaps = 24/702 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE--QDPSRLR 203
           ++ +          ++ +  +I  R++ +G++E  +Q  G+ RI+++LPG    D  R  
Sbjct: 45  IVLEPTTPTFTRQDLDVARTVIENRVNALGVAEPLVQIQGNRRIVVELPGLSKADEDRAI 104

Query: 204 QLLGTTAKMSFHKVLPN----------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           +L+G TA + F  +  N            K+          +    +      V ++G  
Sbjct: 105 RLIGQTAVLEFRILNENAQGLTVADINQQKRANPNLDTKSLEQRLFKQSDLGPVLLTGKD 164

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
           L  A A FD    +P V ++F   GA++F EVTR NIG+ LAVVLDG+V TAP I  AI 
Sbjct: 165 LANAQATFDQFG-RPQVSLTFTGEGAKKFEEVTRQNIGRRLAVVLDGKVFTAPTIRSAIS 223

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
            G+A I G   +E A  +A +LR+GSLPI L   E R +G  LG D+I  G  A + G V
Sbjct: 224 GGQAVIEGLSGLEEASEIALVLRSGSLPISLREAETRAIGPTLGQDAIRSGIYAGIVGTV 283

Query: 374 LIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           LI + +   Y    GLVA   +    +L L ++S L ATLTLP IAG++L +G AVD N+
Sbjct: 284 LIFVLIFAYYGFWLGLVAALGLIYTSVLILGIISGLSATLTLPGIAGLILTLGAAVDGNV 343

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L  ERI+EE +  +    ++  GF  +  TI D N   L+A   L+ +  G V+GFA+ +
Sbjct: 344 LSFERIKEEIKHGKRFRQAIPGGFQHSIITILDVNACHLLAAAALYQYSTGPVKGFAVML 403

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
            + ++ S+F+ +   R ++  I   +++K +                 QFM+   +    
Sbjct: 404 AVGVVASVFSNLVFSRWLLDRIAERREVKPL---------YWVWGSRFQFMKWARYITTF 454

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S++ ++ +  +    G N GIDF GG    V          +RS L    I   +     
Sbjct: 455 SLILAVIAGSIALVKGFNLGIDFTGGTAFTVRTGDKTTTEDIRSFLSQAGIPGAAGNEAI 514

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                  + +         T    +  +++ +    + +  +E VGP +  EL R  I  
Sbjct: 515 ITAVATQQGREYTVRVRQLTEENRIQLERLFQERLSAQVLQSETVGPSVGSELRRNTIYA 574

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+I    +++Y+  RF W F LG+I  +  D+    G ++LFG+EF +  VAA+LT+IGY
Sbjct: 575 VLIGLALIMVYVAFRFDWMFGLGSIIAVAHDVAIVAGMYSLFGLEFTIPTVAALLTIIGY 634

Query: 733 SVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           S+ND +++ DR+R+N+K       S+R++ D +IN+TL R+V T++   + V+ +   GG
Sbjct: 635 SLNDSIIISDRIRENLKDPQNRGKSYREIFDLAINQTLSRTVMTTLTTLLPVIALLFLGG 694

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           SV+  F++ +  GI V   SSI++ + +++     +A+  ++
Sbjct: 695 SVLRDFSLAITVGIFVGTYSSIYVVSALVVAWKTRQAQRQKL 736


>gi|229495647|ref|ZP_04389376.1| putative protein-export membrane protein SecD [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317417|gb|EEN83321.1| putative protein-export membrane protein SecD [Porphyromonas
           endodontalis ATCC 35406]
          Length = 989

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 194/819 (23%), Positives = 368/819 (44%), Gaps = 56/819 (6%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMR--QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               +   + LR+ + + G+   +++  + + +I +     +  E +   +         
Sbjct: 169 ESASEASINVLRTRIDRFGVVSPNIQKIEGEGRILVELPGVKEPERVRGLLQQSANLQFW 228

Query: 125 KLNV---------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
           +               + L+           +               +       + +  
Sbjct: 229 RTYTYADVESDLITANERLVALAGAPAEETEVVAVADSAANEATPATANASDSNAVAEQR 288

Query: 176 ISESTIQRLGSHR---------ILIQLPGEQDPSRLRQLLGTTAKMSFH----------- 215
             ES                   ++        +R        + +              
Sbjct: 289 ARESVEAMDKKMAEGSKLFDLLQVVNRGTVVGLARNANRAAIDSMLEVAHERGFIREDLM 348

Query: 216 -KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP--KTHKPVVDI 272
                +            + +    +       ++SG  + GA +       +  PVV +
Sbjct: 349 LLWGNDPYVDPQTKKETDIYELYAIRGNRNGDPDLSGDVVTGAKSEVSQGIASKGPVVTM 408

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
           + DE GAR++  +T+DNIGK +AVVLDG V +AP +N  I  G+++ISG+FT+E    LA
Sbjct: 409 TMDEEGARKWARLTKDNIGKAIAVVLDGVVYSAPNVNSEITGGRSEISGHFTVEQTTDLA 468

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVAD 391
            +L +G +   + I +E  VG  LG +SI  G  +    LVL++++M ++YG   GL+AD
Sbjct: 469 NVLNSGKMEASVMIEQENVVGPTLGEESIRSGIISFFIALVLLMVYMCLVYGLIPGLIAD 528

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ +N   TL +L+   + LTL  IAG+VL +G+AVD+N+L+ ERI+EE R  +S+  +
Sbjct: 529 GALIVNSFFTLGILASFHSVLTLSGIAGLVLTLGMAVDANVLIFERIKEELRAGKSMTRA 588

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           +  G+  A+S IFDSNIT +I   +LF  G G ++GFA T+ + ++ S  TA+ + R ++
Sbjct: 589 IADGYGNAFSAIFDSNITTIITAAILFIVGTGPIKGFATTLMIGLVASFITAVFLTRIVV 648

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
             + +  KM  +         ++ D      +  R  G+ + ++  I  +  LFT  LN 
Sbjct: 649 EALDKKGKMSKVTYTTALSKNVLVD-PKFNILGKRKMGIAMPVILIIAGLVGLFTLKLNM 707

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           GI+F GG    +  ++PV ++ VR  L +     +   +   +   +        D    
Sbjct: 708 GIEFSGGRNYVIEFDQPVQVAQVRDVLAAPFDNKLVVTSIGSQGTQVRVATNFKVDENTA 767

Query: 632 TRVLEMVKKKIT------------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
               E+                  +    + I +++ V   +S ++ RK ++ VI++ + 
Sbjct: 768 EVEDEINTILYENTKSLYKNAPDRDTFLSTGIVSSQKVSASMSHDIARKALIAVILALVF 827

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGY 732
           M  YI +RF+   ++LGA  ++       +  + L      F +E +   +AA+L +IGY
Sbjct: 828 MAAYILLRFRHLSYSLGAFASVSATTLSIIALYVLLWRIMPFTMELDQNFIAAILAIIGY 887

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           S+ND VVV+DR+R+ +K Y         ++ ++N TL R++ TS+  F+ +  + ++GG+
Sbjct: 888 SINDTVVVFDRVRETVKNYPNR-DPHTTVNDALNSTLARTLNTSITTFLVMFIIFIFGGA 946

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + SF   +  G+V+   S++F+A+PI   I++ R   +
Sbjct: 947 SMRSFTFAILLGVVIGTYSTLFVASPIAYMIWEKRRSKS 985



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 16/191 (8%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
               +I LGLDL+GG ++VL ++  D +        D    FLK     V S        
Sbjct: 66  ARTQQIGLGLDLKGGMNVVLRLNAKDLLRNLSGKNEDP--KFLKALDNAVKSTHSGD--- 120

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
              F D    E     +    Q      N   ++ +   +T+ ++  +L           
Sbjct: 121 ---FIDKFVAE--YKALAPEGQLAVVFGNGSLREEISARSTDVDVIKILKAKY-----ES 170

Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           A E S+ ++R RID+ G+      +  G  RIL++LPG ++P R+R LL  +A + F + 
Sbjct: 171 ASEASINVLRTRIDRFGVVSPNIQKIEGEGRILVELPGVKEPERVRGLLQQSANLQFWRT 230

Query: 218 LPNNSKKGFMF 228
                 +  + 
Sbjct: 231 YTYADVESDLI 241


>gi|228923163|ref|ZP_04086454.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228836542|gb|EEM81892.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 754

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 190/695 (27%), Positives = 328/695 (47%), Gaps = 23/695 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGADLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  +  G++V   SS+F+A+ I L + + R K  R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKKGR 740



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ +    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFIIVLLIGGVIGSAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|229129691|ref|ZP_04258659.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-Cer4]
 gi|228653808|gb|EEL09678.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-Cer4]
          Length = 754

 Score =  325 bits (832), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 190/695 (27%), Positives = 328/695 (47%), Gaps = 23/695 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  +  G++V   SS+F+A+ I L + + R K  R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKKGR 740



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|188995566|ref|YP_001929818.1| bifunctional preprotein translocase subunit SecD/SecF
           [Porphyromonas gingivalis ATCC 33277]
 gi|188595246|dbj|BAG34221.1| protein-export membrane protein SecD/SecF [Porphyromonas gingivalis
           ATCC 33277]
          Length = 981

 Score =  325 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 213/826 (25%), Positives = 374/826 (45%), Gaps = 57/826 (6%)

Query: 60  VDEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113
            D    +        +     LR+ +   G+   ++++   Q +I +     +  E +  
Sbjct: 156 ADVVRLLKEKYNSAVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRT 215

Query: 114 KVTLFLQGVNSKL-----------------------NVDPKKNLLVTTTEKEISIVLSQN 150
            +         +                        N D        TT+   +   S  
Sbjct: 216 LLQRSANLQFWRTYKFEEVSGDLIAANDRLSELAMNNTDATPETEPATTDSVAATADSTA 275

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGI----SESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                 S  + Q       R D +             +G  R        +   +   L 
Sbjct: 276 VQAVADSATVAQEEAKDATRKDALFSLLTPVNRGGAVVGVARRANMAQISEMLQQAHDLK 335

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT- 265
            T   + F                                 ++ G  +  A ++      
Sbjct: 336 VTREDVLFLWGAKAIEDPETKKETDLYELYAIRT-NRTGDPDLGGDVVTSAKSDIQNDFG 394

Query: 266 -HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +P+V ++ +E GAR++  +T+DN+G+ +A+VLDG V +AP +N  I  G++QISG+FT
Sbjct: 395 RSEPIVSMTMNEEGARKWARITKDNVGRAIAIVLDGVVYSAPNVNDEITGGRSQISGHFT 454

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           +E AG LA +L +G +   ++I +E  +G  LG++SI  G  + +  LV+++ +M + YG
Sbjct: 455 VEEAGDLANVLNSGKMDATVSIEQENVIGPTLGAESIKAGFLSFLLALVILMCYMCLAYG 514

Query: 385 K-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              GL+A+ ++ +N   TL +L+   A LTL  IAG+VL +G+AVD+N+L+ ERI+EE R
Sbjct: 515 FLPGLIANGALIVNSFFTLGVLASFHAVLTLSGIAGLVLTLGMAVDANVLIFERIKEELR 574

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             ++   ++  G+  A+S IFDSN+T +I  ++LF +G G +RGFA T+ + ++ S  TA
Sbjct: 575 AGKTPIRAVTDGYGNAFSAIFDSNVTTIITGIILFLYGTGPIRGFATTLIIGLIASFITA 634

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + + R +   + +  ++  I         L+    +   +  R  G  I ++  +  +  
Sbjct: 635 VFLTRIVFEKLAKKGRLDKITFTTSITRNLL-VNPSYNILGKRKTGFIIPVIIIVLGLIA 693

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            FT GLN GI+F GG    V  ++PV    VRS L S     +   +   E   +     
Sbjct: 694 SFTIGLNRGIEFSGGRNYVVKFDQPVSSEAVRSALSSPLQEKVLVTSIGTEGTEVRISTN 753

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQ-----------NTEIVGPKISRELIRKGIVG 672
                 ++    E+  K    +    T Q           +++ V P +S ++ R  I  
Sbjct: 754 YKIQEESEETEAEITDKLYQSLKGFYTQQPTADQFLDNIISSQKVSPSMSSDITRGAIWA 813

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAA 725
           V++S I M IYI IRF+   F+ G   ++       +  +AL      F +E +   +AA
Sbjct: 814 VLLSMIFMAIYILIRFRDISFSAGVFVSVAATTFCIIALYALLWKILPFTMEIDQNFIAA 873

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +L +IGYS+ND VVV+DR+R+ MKLY     +  +I+ ++N TLGR++ TS+  FI +L 
Sbjct: 874 ILAIIGYSLNDTVVVFDRIRETMKLYPNRDRY-QVINDALNSTLGRTLNTSLTTFIVMLV 932

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++GG+ + SF   +  GIV+   S++F+A P+   I   +   A
Sbjct: 933 IFIFGGATMRSFTFSILLGIVIGTYSTLFVATPLAYEIQKRKLNKA 978



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 97/254 (38%), Gaps = 41/254 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA---------------------- 38
           M+N  +++++ S +  I       +F+      +  +                       
Sbjct: 1   MQNKGFVIVITSALAIICAFYLSFSFVTNRYEKKAKAMGDVAGMAYLDSMSNEKVWFGYT 60

Query: 39  ---MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95
                  +I LGLDL+GG +++L+++  D +        D       K         +  
Sbjct: 61  LKEAQAQQIGLGLDLKGGMNVILKLNASDLLRNLSNKSLDP---NFNKALENAAKSTEQS 117

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           + I +   + R  +          +      + D +  +   +T+ ++  +L +      
Sbjct: 118 DFIDIFVKEYRKLDPNG-------RLAVIFGSGDLRDQITAKSTDADVVRLLKEKY---- 166

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
            + A+E S  ++R RID  G+    +QR  G  RIL++LPG +DP R+R LL  +A + F
Sbjct: 167 -NSAVEASFNVLRARIDAFGVVAPNLQRLEGQGRILVELPGVKDPERVRTLLQRSANLQF 225

Query: 215 HKVLPNNSKKGFMF 228
            +        G + 
Sbjct: 226 WRTYKFEEVSGDLI 239


>gi|163942161|ref|YP_001647045.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           weihenstephanensis KBAB4]
 gi|163864358|gb|ABY45417.1| protein-export membrane protein SecD [Bacillus weihenstephanensis
           KBAB4]
          Length = 755

 Score =  325 bits (831), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 189/695 (27%), Positives = 330/695 (47%), Gaps = 22/695 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +               ++        L      A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLDFEEGKDSYKAESAKTNNQKFLSA----ATVSQVFNQAEVSIVGGNFTVESAKEL 230

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ +I LFM+V Y   GLVA 
Sbjct: 231 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 290

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 291 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 350

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ STI D+NIT + A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 351 FRAGNHRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 410

Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560
             +++ +   K +    +    +IP              I F+         SI+  I  
Sbjct: 411 GLLVKSRYFDKKLSYFGVKEKDIIPLTKGAVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 470

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + +   +S +  +L+ L I            +    
Sbjct: 471 AIILPIFKMNLGIDFASGTRIDLQSKQATTVSNIHKDLKELNIDVKEEDIVPTGDDNKGF 530

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I+++ +
Sbjct: 531 AVRTLGVLSKDEIAKTKTF----FNDKYGTEPNVSTVSPTIGKEIARNAFIAVLIASLVI 586

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F+LF IE +LT +AA+LT+IGYS+ND +V 
Sbjct: 587 ILYVSIRFRFTYALSAVIALLHDAFVMIVMFSLFQIEVDLTFIAAILTIIGYSINDSIVT 646

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 647 FDRNRELYKQKKRVRDIKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 706

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++ +  G+VV   SSIF+A+ I L + + R K  +
Sbjct: 707 SLALLIGLVVGTYSSIFVASQIWLMLENRRLKRGK 741



 Score =  117 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 92/261 (35%), Gaps = 6/261 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                 + + +      D     S   + Q    +           V +        +  
Sbjct: 169 PPPTNLMVIWLDFEEGKDSYKAESAKTNNQKFLSAATVSQVFNQAEVSIVGGNFTVESAK 228

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +  ++      +           VG K  ++ + + I    I    + +++ + ++   
Sbjct: 229 ELSSLLNAGALPVDLKEMYS--TSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLP- 285

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L A+  L L I  TL  F        L  +AA++  +G +V+  ++ Y+R+++ +K+  
Sbjct: 286 GLVAVIMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKI-- 343

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              S         + +L   +  ++    +   +  +G S +  FA  +   I+V   ++
Sbjct: 344 -GKSMMSAFRAGNHRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITN 402

Query: 813 IFIAAPILLFIYDWRAKNARI 833
           +F    +L  +   R  + ++
Sbjct: 403 VFGTRFLLGLLVKSRYFDKKL 423



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++    ++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|182415275|ref|YP_001820341.1| protein-export membrane protein SecD [Opitutus terrae PB90-1]
 gi|177842489|gb|ACB76741.1| protein-export membrane protein SecD [Opitutus terrae PB90-1]
          Length = 849

 Score =  325 bits (831), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 220/852 (25%), Positives = 399/852 (46%), Gaps = 49/852 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R N W ++L   +    +   +P    Q  +D   + +          L           
Sbjct: 3   RRNLWKLLLTLAMLGWAIATLIP-LQDQPFVDYVKAHVTAKPAEFNALL----------- 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             +      +         LK+ G      + Q    I +    +  ++     +   L+
Sbjct: 51  -AEASAMKREGRVLSEFVALKQIGKDRRLDLTQYFPDIRIESNLTNVEKRNEILLAELLR 109

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L +       V  T  E          ++  +  +++++EII  RI+  G++E  
Sbjct: 110 RSKSRLPLGLDLAGGVAFT-LEAVQRPGDTADERERAEKLDKAIEIISTRINAFGVAEPL 168

Query: 181 IQRLGSHRILIQLPGE--QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR---- 234
           I+++G++RI +QLPG   +D   +   +   A++ F  V P  +    +           
Sbjct: 169 IRKVGNNRIEVQLPGVNTRDNPEIVDQVKAPARLDFRIVHPTLTPAPGVETPPGYEIMSL 228

Query: 235 -------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                  ++   +  ++   E++G  ++ + A       KP V + F   G +RF EVTR
Sbjct: 229 DYEGRRGETGSEELFIKRVPEMTGEAISNSFAR-PDMYGKPEVILQFTNEGKQRFAEVTR 287

Query: 288 DNIGKPLA--------VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
                           +VLD ++ +AP + + I S  AQI+G+FT   A  LA +L    
Sbjct: 288 QIAEGGRQAGRLGRLAIVLDNKLYSAPTVREEINSESAQITGSFTDREALNLANVLN-NP 346

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           L ++L + E+  VG  +   ++  G  A   G+ L+ +FMI  Y   G VA  S+ LN++
Sbjct: 347 LDVELQVKEQYEVGPTMAESAVESGKRATYIGVGLVAVFMIGYYTIAGFVAVLSVTLNIL 406

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           + L +L+ LGATLT+P IAGIVL +G+AVD++IL+ ER+REE    +S+  +   G  RA
Sbjct: 407 VVLGVLASLGATLTMPGIAGIVLTVGMAVDAHILIFERMREELSAGKSLVAAFHSGHDRA 466

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           ++TI D+N+T LI +V++  FG G V+GF +T+ + I  ++FTA+ + + ++ F+I   +
Sbjct: 467 FTTIVDANLTTLITSVLMIVFGNGPVKGFGVTITIGIFSTLFTALLVSQMLLDFLISSGR 526

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGG 578
           MK                 AI F++        S +     +  +   G + YGIDF GG
Sbjct: 527 MKK------MLMMSFLQPPAIDFVKYGKRAFIASWIVVAIGLSAIAFRGSSIYGIDFAGG 580

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             + +   + V++  V+  L++ ++G+               L  Q      Q  V  + 
Sbjct: 581 DVINLAFKQEVNIEQVQRTLDNAKLGETLPFYQSEIGGGQRLLNLQTEAGKGQAAVATL- 639

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
             K         +  + IVGP + RE+    ++ + +S + +++Y+  RF+  + +GA+ 
Sbjct: 640 --KSAYPNAGFEVAGSTIVGPSMGREIQLNALLSIGLSILGIMLYVAFRFEIGYGIGAVV 697

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           + I D+  T+G F L G +F+   V A+L ++GYS+ND +VV+DR+R+ +K    + + R
Sbjct: 698 STIHDVLLTIGIFVLSGRQFSAPMVGAILLIVGYSINDTIVVFDRIREELKNNPNT-NLR 756

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           D+I+ + +    RS+ TS+  F++ L + ++GG V+   +     GIV    SS+FIA P
Sbjct: 757 DVINLATSRVFARSILTSLTTFLAALALYLFGGGVVNDLSFTFLVGIVTGTFSSLFIATP 816

Query: 819 ILLFIYDWRAKN 830
           I  + +    K+
Sbjct: 817 IFYWWHKGDRKH 828



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 77/204 (37%), Gaps = 4/204 (1%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                L +       +     ++    VGP ++   +  G     I    + +++   + 
Sbjct: 332 TDREALNLANVLNNPLDVELQVKEQYEVGPTMAESAVESGKRATYIGVGLVAVFMIGYYT 391

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
                 A+ ++ L+I   LG  A  G    +  +A ++  +G +V+  +++++RMR+ + 
Sbjct: 392 I-AGFVAVLSVTLNILVVLGVLASLGATLTMPGIAGIVLTVGMAVDAHILIFERMREELS 450

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                 S         +      V  ++   I+ + M V+G   +  F + +  GI    
Sbjct: 451 A---GKSLVAAFHSGHDRAFTTIVDANLTTLITSVLMIVFGNGPVKGFGVTITIGIFSTL 507

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
            +++ ++  +L F+         +
Sbjct: 508 FTALLVSQMLLDFLISSGRMKKML 531


>gi|94985340|ref|YP_604704.1| bifunctional preprotein translocase subunit SecD/SecF [Deinococcus
           geothermalis DSM 11300]
 gi|94555621|gb|ABF45535.1| protein-export membrane protein SecD [Deinococcus geothermalis DSM
           11300]
          Length = 762

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 214/686 (31%), Positives = 363/686 (52%), Gaps = 17/686 (2%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE--QDPSRLRQLLGT 208
                    +++   +I  RI+ +G++E T+   G  R+++++PG   Q   R R+++  
Sbjct: 81  ESGTATRDELDRVKTVIENRINALGVAEPTVTVAGGKRVVVEIPGATPQVQQRAREIIQR 140

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           TA++ F  V P       +          G        V+ +G  +  A A  DP T + 
Sbjct: 141 TARLEFRIVKPGVQPDPTLARQDPPSG--GYTLSDLGPVQATGEVIADAKAATDPTTGRW 198

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           VV+      GA +F + T  N+G+ +AVVLD R+ +   I Q       QISGNF+ E A
Sbjct: 199 VVNFQTTPAGAEKFGDFTGKNVGRLMAVVLDDRIQSVATIQQ-RLFRDVQISGNFSAEEA 257

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWG 387
             LA +L++G+LPIK+    ER +G  LG+D+I  G  A V G+ L+   + + Y   +G
Sbjct: 258 SQLALVLKSGALPIKIKTEAERAIGPTLGADAIRSGAIAAVVGIGLVFAMLFLYYGFWFG 317

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           LVA   +  + IL L LL   GATLTLP IAG+VL IG AVD N++  ERI+EE +K + 
Sbjct: 318 LVAALGLLFSSILILGLLGGFGATLTLPGIAGLVLTIGAAVDGNVISFERIKEELQKGKG 377

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           +  S+  G+  + + I D N + L++ + L+ +  G V+GFA+T+ + ++ S F+ +   
Sbjct: 378 LKNSIGAGYQHSTAAILDVNASHLLSALALYNYSTGPVKGFAVTLIIGVVASTFSNLVFA 437

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
           +  + ++ + +   S  +              I FM+       +S+  ++    +L T 
Sbjct: 438 KWALQWLAQRRPNASAPVRLGK--------TNINFMQVAPIVTSVSVALALVGGGILATR 489

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
           GLNYG+DFK G  L V A+       VRS +    +  ++ Q+   ++     L      
Sbjct: 490 GLNYGVDFKPGTTLTVRASTQTTTEQVRSAVAGAGVPKVTPQSATIQRTETPGLSGAQYT 549

Query: 628 SVAQTRVLEMVKKKITEIV--PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                     V++    I   P   +Q TE VGP + +EL +K I  V++    +L+Y+ 
Sbjct: 550 VKVPELTTPEVQQLSAAISKLPQGEVQATETVGPAVGQELTQKTIYAVLLGLGLILVYVG 609

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            RF +   LG+I   I D+   +G F+L G+EF +  VAA+LTLIGYS+ND ++V DR+R
Sbjct: 610 FRFDFIMGLGSILAAIHDVAIAMGLFSLLGLEFTVATVAALLTLIGYSLNDSIIVSDRIR 669

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +N++       +R++++ SIN+TL R+V TS++  + ++ + ++GG V+  F++ +  GI
Sbjct: 670 ENLREM-RGRPYREIVNTSINQTLSRTVMTSISTMLPLVSLLIFGGPVLRDFSLILLIGI 728

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           +V   SSI+I AP+++++ +W+ K  
Sbjct: 729 LVGTYSSIYIVAPMVVYLEEWKDKRK 754



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/228 (10%), Positives = 62/228 (27%), Gaps = 9/228 (3%)

Query: 24  PNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           P   PQ+    +        ++LGLDL+GG  + L  +        L      + + +  
Sbjct: 46  PWDHPQTPFSLWNDRF--QFMTLGLDLKGGLRIELAPESGTATRDELDRVKTVIENRINA 103

Query: 84  EGIGVFSMRQ-IQNKITLSFADSRF--KENIADKVTLFLQGVNSKLNVDPKK-NLLVTTT 139
            G+   ++      ++ +    +    ++   + +    +     +    +    L    
Sbjct: 104 LGVAEPTVTVAGGKRVVVEIPGATPQVQQRAREIIQRTARLEFRIVKPGVQPDPTLARQD 163

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
                  LS     Q     I  +           G      Q   +          ++ 
Sbjct: 164 PPSGGYTLSDLGPVQATGEVIADAKAATD---PTTGRWVVNFQTTPAGAEKFGDFTGKNV 220

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
            RL  ++      S   +     +   + G     ++     +++   
Sbjct: 221 GRLMAVVLDDRIQSVATIQQRLFRDVQISGNFSAEEASQLALVLKSGA 268


>gi|212550506|ref|YP_002308823.1| bifunctional preprotein translocase subunit SecD/SecF [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
 gi|212548744|dbj|BAG83412.1| preprotein translocase SecD/SecF subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 976

 Score =  324 bits (830), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 194/803 (24%), Positives = 364/803 (45%), Gaps = 44/803 (5%)

Query: 71  QMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
           +   + LRS + K G+   ++++   +  I++     +    + D +         +   
Sbjct: 176 ENSFNVLRSRIDKFGVVAPNIQRMAKEGLISIELPGVKDPNRVRDLLQGTANLEFWETYS 235

Query: 129 DPK--KNLLVTTTEKEISIVLSQNN---------------IDQVISHAIEQSMEIIRQRI 171
           + +  + L+        SI L+                    Q    A  ++ E ++  +
Sbjct: 236 ESEIHQTLIFANNIIRDSIQLAHQYFNKTAVNNNSATMGFSPQTTVKAKSKASEDLQYPL 295

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSR-LRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
                              ++   + +    L          +    L    K       
Sbjct: 296 FTSLRLNPNQPHQTCVVASVKRNEKPNIDAFLGNSKVKALLDANRISLKWTIKPRSEENG 355

Query: 231 RFLRDSDGNQYLVEDK-VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
            +   +    Y+       +SG  +  A+ +F   +H   V ++     A+ +  +T+DN
Sbjct: 356 VYDLIALKVSYIDNRPKPILSGDVIQDASDHFGQTSHYAEVSMTMKSEAAKVWARLTKDN 415

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD  V + P ++  I  G ++I+GNFT E A  LA +L++G +  +  IV+E
Sbjct: 416 LGKAIAIVLDDAVYSFPTVSSEINDGTSRITGNFTAEQAKDLANVLKSGKMSARAKIVQE 475

Query: 350 RNVGADLGSDSIYKGTC-AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
             VG  LG  +I  G    I+A  +LI+  +++     GL+A  ++ +N+  +L +++  
Sbjct: 476 EIVGPSLGQQAIKLGFISFIIALTILILYLILIYGLGPGLIASSALVINLFFSLGVMASF 535

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
              LTL  IAGIVL + LAVD+N+L+ ERI+EE R    +  +++ G+ +A+  IFD+N+
Sbjct: 536 HVVLTLSGIAGIVLALALAVDANVLIYERIKEEMRGGSKIRKAVEEGYRKAFPAIFDANL 595

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+LI  ++L   G G ++GFA T+ + I +S FTA+ + R      +   K+++      
Sbjct: 596 TSLITGIILLICGTGPIQGFAFTLIIGIGVSFFTAVFLTRLTYETFLSKGKLQNFTFITK 655

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                +       F++       +  + +  S       GLN GID+ GG    +   +P
Sbjct: 656 LSKNFLVS-PNFNFLKNLRLLYIVLSVIATMSFVSFLFRGLNKGIDYTGGRNYVIRFKQP 714

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV-------------AQTRVL 635
           ++ + V+  L              G  N +        +S                 ++L
Sbjct: 715 INTAQVQELLNPYFENHTPSVITIGTANQVRISTNYMIESNDLCTDSIIQYKLYEGLKLL 774

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694
             V     + +    +Q+ + VGP I+ +L +K I  V ++ +A+ +Y+ +RF+   +++
Sbjct: 775 LPVGTTYDQFINNGYVQSLQKVGPSIADDLKQKAIWAVGLAVLAIGLYVLLRFRDISYSV 834

Query: 695 GAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           G+I  L  D    LG ++L      F +E + T + A+LT++GYS+NDKVV++DR+R+ +
Sbjct: 835 GSIAALTFDTLFILGTYSLLWGIVPFSLEVDQTFIGAILTVVGYSINDKVVIFDRVREYI 894

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             +     F ++ + S+N TL R+  TSM+  + +L +  +GG  I SF+  M  G+V+ 
Sbjct: 895 FFHPKKNKF-EIFNASLNSTLDRTFNTSMSTLLVLLIIFFFGGESIRSFSFAMILGVVIG 953

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             SS+FIAAPI   I   + K  
Sbjct: 954 TLSSLFIAAPIAYEIQIRKKKKK 976



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 88/251 (35%), Gaps = 48/251 (19%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLP--------------QSMLDRFPSAMPKNRI-- 44
           M+N   +  L   +  I +     +F+                S+ +++  ++   +I  
Sbjct: 1   MQNKGLVKFLVVALTLISIFYLSFSFVTNKYYKRARKYSGGIPSLENQYLDSLANEKIWL 60

Query: 45  ------------SLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
                       +LGLDL+GG ++++E+   D +        D + +             
Sbjct: 61  GYSLEKCRAMEINLGLDLKGGMNIIMEIASADILKSLSDNNPDLIFNQ--ALDRATELQS 118

Query: 93  QIQNKITLSFADSR---FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
           +       +FA +            +    +           + ++              
Sbjct: 119 KKGKDFVSAFALAYKELDPNAKLSVIFSTYELKGKICLQSTNEEVIAV------------ 166

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGT 208
             +   +  A E S  ++R RID+ G+    IQR+     I I+LPG +DP+R+R LL  
Sbjct: 167 --LRNELRIAYENSFNVLRSRIDKFGVVAPNIQRMAKEGLISIELPGVKDPNRVRDLLQG 224

Query: 209 TAKMSFHKVLP 219
           TA + F +   
Sbjct: 225 TANLEFWETYS 235


>gi|261754868|ref|ZP_05998577.1| protein-export membrane protein secD [Brucella suis bv. 3 str. 686]
 gi|261744621|gb|EEY32547.1| protein-export membrane protein secD [Brucella suis bv. 3 str. 686]
          Length = 781

 Score =  324 bits (830), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 395/719 (54%), Gaps = 24/719 (3%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 57  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 111

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 112 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 171

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 172 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 231

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 232 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 291

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +    FM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 292 ERTIASALGEDYASAAVLAALVVGL----FMVLSYGILGVIALVALVVNIIILTAVLSLI 347

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 348 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 407

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 408 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 467

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 468 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 524

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 525 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 581

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 582 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 641

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 642 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 700

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 701 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 759



 Score = 98.2 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 32  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 91

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 92  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 149

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 150 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 205

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 206 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 265

Query: 243 VE 244
            +
Sbjct: 266 FD 267


>gi|320120444|gb|ADW16147.1| protein-export membrane protein SecDF [Filifactor alocis ATCC
           35896]
          Length = 713

 Score =  324 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 198/681 (29%), Positives = 352/681 (51%), Gaps = 34/681 (4%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
                ++  ++Q++ + R+R+D +G++E +I R G  R+ I+LPG ++       +G TA
Sbjct: 64  ATGDELNRIMDQTIAVFRKRVDAMGLTEPSIVREGEKRVRIELPGVKNAEEAMTSIGKTA 123

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           ++ F K                              V ++G  +  +    DPKT  PVV
Sbjct: 124 QLMFVKED--------------------------GSVVLTGKEVKDSQVAVDPKTQIPVV 157

Query: 271 DISFDEMGARRFFEVTR--DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
            + F++ G + F E T         + ++LD ++++AP +   IP+G A+I+G+FT E+A
Sbjct: 158 TLEFNDEGTKAFAEATAELAPTKGKIMIILDDQLISAPSVQSPIPNGNAEINGDFTYESA 217

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             L++++R G+LP+    +E     A LG  ++       + G++L++L M+ +Y   G 
Sbjct: 218 STLSSLIRGGALPVNFKEIESSVTTATLGDKALQNSIKGALLGILLVMLLMLAVYRLPGF 277

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +AD ++   +++   + + L ATLTLP IA  +L +G+AVD+N+++ ERI+EE RK +S+
Sbjct: 278 IADIALVAYMLIVAYVYAALHATLTLPGIAAAILSVGMAVDANVIIFERIKEEMRKGKSI 337

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             S++ GFS+A STI DS IT  IA VVL++FG G ++GFA+T+ + IL S+FTA+ I +
Sbjct: 338 RISIESGFSKALSTILDSQITTFIAGVVLYYFGTGPIKGFALTLMIGILASIFTAVFITK 397

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
            ++   I    +   +   +             FM  +     IS +  I  +      G
Sbjct: 398 LLLKSFINAFHITKTEYFGVKVGMDKES-KLFDFMGKKKIFFSISAIVIIIGLATSTFSG 456

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           LNYGIDF GG  +G+   + V+ + +R  + +     +S       K+ +     +  D+
Sbjct: 457 LNYGIDFTGGTTMGINLGKYVETTEIRE-ITNEIDPTMSINYLGENKDSVELKTIKDLDN 515

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +  V E  K K           +    GP + +E+  K    V I+   ML+Y+  RF
Sbjct: 516 AERKAVFEKFKTKYNLTDDAFYKSSQ--FGPTVGKEIKHKAFTSVAIATFCMLLYVSFRF 573

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +  + + AI  L+ D+      +A+  I  N   VAA+LT++GYS+ND +V++DR+R+ +
Sbjct: 574 QLAYGIAAIIALLHDVLVVFAVYAVLRIPLNSPFVAAMLTVVGYSINDTIVIFDRVREEL 633

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                  +  ++++KSI++TL RS+ TS+   +++L + + G   I  F +P+  GI V 
Sbjct: 634 --GGRRSNLEEVVNKSISQTLKRSINTSLTTLLAILSLYIMGVESIREFTLPLLAGITVG 691

Query: 809 ASSSIFIAAPILLFIYDWRAK 829
             SS+ IA  + + +     K
Sbjct: 692 TYSSVCIAGSLWVILTKKLRK 712



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 48/415 (11%), Positives = 120/415 (28%), Gaps = 23/415 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +    +    +  + +       +    +        K++I  GLDL+GG ++V E 
Sbjct: 1   MKQSKTKSMSIFFLVILLIASFGLAAIKGVNVGSKTFGNVKSQIRQGLDLKGGFYVVYEA 60

Query: 61  DED---DFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
           + D   D +N  +       R  +   G+   S+ R+ + ++ +     +  E     + 
Sbjct: 61  ETDATGDELNRIMDQTIAVFRKRVDAMGLTEPSIVREGEKRVRIELPGVKNAEEAMTSIG 120

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
              Q             L+    +  + +   +    QV      Q   +  +  D+   
Sbjct: 121 KTAQ-------------LMFVKEDGSVVLTGKEVKDSQVAVDPKTQIPVVTLEFNDEGTK 167

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           + +      +      +    D       + +       ++  + + +        +R  
Sbjct: 168 AFAEATAELAPTKGKIMIILDDQLISAPSVQSPIPNGNAEINGDFTYESASTLSSLIRGG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  E +  ++   L         K     + +    M A         +I     +
Sbjct: 228 ALPVNFKEIESSVTTATLGDKALQNSIKGALLGILLVMLLMLAVYRLPGFIADIALVAYM 287

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           ++   V  A      +P   A I        A ++        +    +I      G   
Sbjct: 288 LIVAYVYAALHATLTLPGIAAAILSVGMAVDANVIIFERIKEEMRKGKSIRISIESGFSK 347

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
              +I           V+      + Y   G +  F++ L + +  ++ + +  T
Sbjct: 348 ALSTILDSQITTFIAGVV------LYYFGTGPIKGFALTLMIGILASIFTAVFIT 396


>gi|218296556|ref|ZP_03497284.1| protein-export membrane protein SecD [Thermus aquaticus Y51MC23]
 gi|218243098|gb|EED09630.1| protein-export membrane protein SecD [Thermus aquaticus Y51MC23]
          Length = 736

 Score =  324 bits (829), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 211/701 (30%), Positives = 361/701 (51%), Gaps = 25/701 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLR 203
           +L + +++      +E++  ++  RI+ +G++E  IQ  G  RI+++LP   + D  R  
Sbjct: 45  ILLEADVENPTPDDLEKARTVLENRINALGVAEPVIQIQGQRRIVVELPGLSQADQDRAL 104

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG----------NQYLVEDKVEISGIH 253
           +L+G  A + F  +    +        + LR++             +        ++G  
Sbjct: 105 KLIGQRAVLEFRILKEGATGTTVAQINQALRENPRLKREDLEKDLIKPEDLGPPLLTGAD 164

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
           L  A A FD    +P V ++F   GA++F EVTR N+ + LA+VLDG+V TAPVI QAI 
Sbjct: 165 LADARAVFDQFG-RPQVALTFTPEGAKKFEEVTRANVNRRLAIVLDGKVYTAPVIRQAIT 223

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
            G+A I G   +E A  +A +LR+G+LP+ L +VE R +G  LG D+I  G  A + G +
Sbjct: 224 GGQAVIEGLSGLEEASEIALVLRSGALPVPLKVVEIRAIGPTLGQDAIQAGIRAALIGTL 283

Query: 374 LIVLFMIVLYGKW-GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
            I L +   YG   GLVA   +     L L LLS LGATLTLP IAG+VL +G AVD N+
Sbjct: 284 AIFLLIFAYYGPSLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNV 343

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L  ERI+EE R  +    ++  GF  +  TI D N   L+A   L+ +  G VRGFA+ +
Sbjct: 344 LSFERIKEELRAGKRFRQAIPEGFRHSTLTILDVNAAHLLAAAALYQYATGPVRGFAVVL 403

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
            + ++ S+F+ +   R ++  +    +++           +        FM    +    
Sbjct: 404 AIGVVASVFSNLVFSRYLLERLAERGEIR---------PPMWLVDPRWNFMGPARYITAA 454

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           ++L +  +  ++FT G NY IDF GG    +  +    +  +R  L             +
Sbjct: 455 TLLLAALASAVVFTKGFNYSIDFTGGTAYLIRTSPETGVDTLRRFLAEKGFPAKEAVITE 514

Query: 613 GEK-NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            +        +              +  +++      + +  +E VGP + +EL R  I+
Sbjct: 515 VQAPTASASYKEFSLKLPPLEDAKRLELERLFREELKAQVLTSETVGPAVGQELRRNAIM 574

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V++    +LIY+  RF W F + ++  +  D+    G ++L G+EF+++ +AA+LT++G
Sbjct: 575 AVLVGLGLILIYVAFRFDWTFGVASVLAVAHDVAIVAGIYSLLGLEFSISTIAALLTIVG 634

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           YS+ND +VV DR+R+N KL    I + +++++SIN+TL R+V TS+   + ++ +   GG
Sbjct: 635 YSINDSIVVSDRIRENQKLL-RGIPYAEMVNRSINQTLSRTVMTSLTTLLPIIALLFLGG 693

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           SV+  FA+ +  GI V   SSI++ + +++F  + R +  +
Sbjct: 694 SVLRDFALAIFVGIFVGTYSSIYVVSALVVFWRNLRGQQPK 734



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 4/113 (3%)

Query: 33  DRFPSAMPKNR-ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
             +    P    I LGLDL+GG  ++LE D ++     L+     L + +   G+    +
Sbjct: 21  AVWKPWAPSEPKIRLGLDLKGGLRILLEADVENPTPDDLEKARTVLENRINALGVAEPVI 80

Query: 92  RQIQN-KITLSFAD--SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           +     +I +         ++     +          L        +    + 
Sbjct: 81  QIQGQRRIVVELPGLSQADQDRALKLIGQRAVLEFRILKEGATGTTVAQINQA 133


>gi|254704199|ref|ZP_05166027.1| SecD/SecF family protein-export membrane protein [Brucella suis bv.
           3 str. 686]
          Length = 771

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 238/719 (33%), Positives = 395/719 (54%), Gaps = 24/719 (3%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 47  RETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 101

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 102 YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 161

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 162 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 221

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 222 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 281

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +    FM++ YG  G++A  ++ +N+I+  A+LSL+
Sbjct: 282 ERTIASALGEDYASAAVLAALVVGL----FMVLSYGILGVIALVALVVNIIILTAVLSLI 337

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 338 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 397

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 398 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 457

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 458 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 514

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +L  +   L  L I           ++ LV +  Q     A+  V   ++ +  +   
Sbjct: 515 DANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQ--- 571

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             + Q  ++VGP +S +L R G++ VI+S I + IY+W RF+W  ALGA+ + + D+   
Sbjct: 572 DYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVIL 631

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G F +F +EFNL +VAA+LT+IGYS+ND VV+YDR+R+N++ Y  S     +ID SIN+
Sbjct: 632 SGMFIVFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRY-KSAPLPAIIDASINQ 690

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++ TS   F++ +P+  +GGS I  FA+ ++ GI+VA+ SSIFIAAP+L+     
Sbjct: 691 TLSRTLLTSFVTFLAHVPLYAFGGSEIRMFALALSVGIIVASYSSIFIAAPLLVQFGLK 749



 Score = 97.8 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L   P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 22  SRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA 81

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 82  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 140 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 196 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 255

Query: 243 VE 244
            +
Sbjct: 256 FD 257


>gi|219669636|ref|YP_002460071.1| protein-export membrane protein SecD [Desulfitobacterium hafniense
           DCB-2]
 gi|219539896|gb|ACL21635.1| protein-export membrane protein SecD [Desulfitobacterium hafniense
           DCB-2]
          Length = 735

 Score =  323 bits (828), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 234/703 (33%), Positives = 372/703 (52%), Gaps = 55/703 (7%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTA 210
              + +  +E++  II +R++++G+SE  IQ      RI++ L G QDP +  + L TTA
Sbjct: 56  GAAITADDVEKAKSIIEKRVNEMGLSEPVIQADLDKKRIIVDLAGVQDPDKAVEALKTTA 115

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           K++F                             +  V I G  L  A A    +++  VV
Sbjct: 116 KLTF--------------------------KDPQGNVVIEGGDLKDARAGQGERSY--VV 147

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            ++F   GA++F +VT  NIG+ + + LD ++L  P +  AI +G+A+I+G  ++E A  
Sbjct: 148 HLTFSPEGAKKFADVTSRNIGQNIGIYLDDQLLQNPQVQAAITNGQAEITGYASLEEAAQ 207

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
            A +LR+G+LP+ L+I E+R VGA LG DS+ K   A +  LV I+LFM+VLY   GLVA
Sbjct: 208 YAVLLRSGALPVSLSIEEKRTVGASLGVDSLNKSINAGIVALVFILLFMLVLYRLPGLVA 267

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
           + S+ +  ++ L  L   GA LTLP IAGI+L IG+AVD NI++ ERI+EE R  +S+  
Sbjct: 268 NISLIVFTLIVLWALKGFGAVLTLPGIAGILLSIGMAVDLNIIIYERIKEELRLGKSLRA 327

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           S++ GFSRA+ T+FDSNIT L A   LFF G  +++GFAIT+G+ I  S+FTAI+  R +
Sbjct: 328 SVEAGFSRAFLTVFDSNITTLFAAATLFFLGTSSIKGFAITLGIGIFASLFTAITFTRML 387

Query: 511 MIFIIRYKKMKSIDINPLSRFF----------------------LIPDCIAIQFMRARFW 548
           + +I+      +     + R                                  ++ R+ 
Sbjct: 388 LRWIVGINPRMNTAWFGVKRENDASGKKTGEATPATQAATYEDVKASMPFYFNVVKRRYI 447

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
              +S++    S+  LFT  LN G+DF GG  L +  ++ V    +   +ES+ +     
Sbjct: 448 WFALSLIMIAVSLGSLFTQKLNLGVDFTGGTMLDMKFSQQVTQEKITQAMESVGLEGPVV 507

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
           Q  D + + L+R      D   +     +   +             + VGP I +EL   
Sbjct: 508 QLSDNDTSALIRTSALEEDKRNE----LLTALQTQVGDFDKESLKEDKVGPAIGQELTEN 563

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             + + I+A+ ML+YI  RF++ +A+  I  L+ D+  T+G F+LF  E + T VAA+LT
Sbjct: 564 AFLSLAIAAVLMLVYIGFRFQFAYAVSGILALVHDVIITVGIFSLFQWEIDATFVAAILT 623

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           + GYS+ND VV++DR+R+N        S+ D++DKS+ + +GRS+ T +   IS+L + +
Sbjct: 624 IFGYSINDTVVIFDRIRENEPRLKRGDSYEDMVDKSVWQMMGRSIKTVLTVLISLLAIYI 683

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            GG     FA+ M  G++  A SS+F A+ IL+ I        
Sbjct: 684 LGGESTQGFALAMLIGVIAGAYSSVFNASQILVEIKKRMKPKR 726



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 18/137 (13%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+  +   +    ++  I ++ ++            P    +  ISLGLDLRGG HLVL+
Sbjct: 1   MKRGSILKLTAALLLIVIAVVFSIQ-----------PLTDSERGISLGLDLRGGVHLVLQ 49

Query: 60  V----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIAD 113
                D        ++     +   + + G+    ++   +  +I +  A  +  +   +
Sbjct: 50  AEPGPDGAAITADDVEKAKSIIEKRVNEMGLSEPVIQADLDKKRIIVDLAGVQDPDKAVE 109

Query: 114 KVTLFLQGVNSKLNVDP 130
            +    +        + 
Sbjct: 110 ALKTTAKLTFKDPQGNV 126


>gi|149279347|ref|ZP_01885478.1| protein-export membrane protein SecD/SecF [Pedobacter sp. BAL39]
 gi|149229873|gb|EDM35261.1| protein-export membrane protein SecD/SecF [Pedobacter sp. BAL39]
          Length = 987

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 198/814 (24%), Positives = 356/814 (43%), Gaps = 59/814 (7%)

Query: 70  LQMYSDELRSFLKKEGIGVFSMR--QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
           +      +RS +   G+   +M+  +  N+I +     + KE +   +    +    ++ 
Sbjct: 177 IDRSFTIIRSRIDGFGVVSPNMQKQEGTNRILIEMPGVQDKERVHKLLQGSAELQFWQVY 236

Query: 128 VDPKKNLLVTTTEKEISIVL-----------------------SQNNIDQVISHAIEQSM 164
            + +    +    K ++ VL                       +          +     
Sbjct: 237 NNEEVYSTMENINKTLASVLKVTAPAATAAAGTDTAAKSESKLAGLAKSTDSKDSAAVKT 296

Query: 165 EIIRQRIDQIGISESTIQRLGSHR------ILIQLPGEQDPSRLRQLLGTTAK-----MS 213
           + + +      +      +  + +       ++    ++D +++               S
Sbjct: 297 QELAKSNPLFAVLNIPTYQAENGQTSLRPGPVVGWVAQKDTAKVNAFFARPEIASIIPHS 356

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           F  +      +  + G   + +    +    D     G            +  +P V + 
Sbjct: 357 FKFMWGVKPMETGVAGGAKIFELYAIKVTSTDGKPDLGGAAISNARADYDQKGRPEVTMY 416

Query: 274 FDEMGARRFFEVTRDNIGKPLAVV-----LDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
               GA ++  +T                LD  V +AP +   IP+G + I+G+FT+   
Sbjct: 417 MTGDGAAKWKGITAAASADASNKKAIAIVLDNMVYSAPTVQNEIPNGISSITGSFTVNDT 476

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             LA +L+AG LP    IV E  VG  LG ++I+ G  + V   V+I++FM + Y K G 
Sbjct: 477 QDLANILKAGQLPAPARIVGEFVVGPSLGQEAIHNGLLSFVLAFVVILIFMALYYNKAGW 536

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           VA+ ++ +N+   + +L  LGA LTLP IAGIVL IGL+VD+NIL+ ER+REE    +  
Sbjct: 537 VANLALVINLFFIMGILVSLGAVLTLPGIAGIVLVIGLSVDANILIFERVREELTLGKPT 596

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             ++  GF  A S+I DSN+T L+  V+L+ FG G V+GFA T+ + IL S+F A+ I R
Sbjct: 597 PLAIKEGFKHAMSSIIDSNVTVLVLGVILYIFGSGPVQGFATTLCIGILSSLFCAVLISR 656

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV-GISILFSICSICLLFTH 567
            +  ++I  K   +         F      A  F+  R       SI+  +  I      
Sbjct: 657 LVFDYLIERKSDITFGNKMTIHAFKNM---AFNFVGHRKVYYTISSIIIVLGFIFYFKNG 713

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
           GLN GIDFKGG    V  ++ ++   V++ L+ +     +     G  N L         
Sbjct: 714 GLNLGIDFKGGRTYIVHFDKDMETEDVKAKLDGVFTESETIVKTAGANNELKITTTYHIT 773

Query: 628 SVAQTR---VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
               T    V + +K  + +     TI++ E VGP I+ +++      ++ S + M IYI
Sbjct: 774 DQETTADKLVEDALKSGLEKTGVKYTIESNEKVGPIIASDIVYGAYGAILFSCLVMFIYI 833

Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDK 737
            +RF K  + LGA+  L  D+   L F+ +      F +E     +AA+LT++GY++ + 
Sbjct: 834 VVRFKKLNYGLGAVIALFHDVLLVLSFYTILDGVLPFSLEIGQDFIAAILTVMGYTMTET 893

Query: 738 VVVYDRMRKNMKLYTTSISFRDL----IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           VVV+DR+R+ +       +  +     I+ ++N TL R++ TS+  F  +L + ++GG+ 
Sbjct: 894 VVVFDRIREKLAESGKEDTHGEARNTLINFALNSTLSRTILTSLTVFFVLLVIFIFGGAS 953

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           I  F   +  G ++   SS+ I+ PI++ +   +
Sbjct: 954 IRGFIFALLIGRIIGTYSSLCISTPIVIDLGKKK 987



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/183 (26%), Positives = 80/183 (43%), Gaps = 14/183 (7%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             I+LGLDL+GG ++ +E+   + V        D   +F K        +          
Sbjct: 72  KEINLGLDLKGGMNVTMEISLGELVKSLAGNTDDV--NFNKALSEAQTKLNAGGKDFMAL 129

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
           F          +K++   +  +   N D    L    T  E+   LS +      + AI+
Sbjct: 130 FVSEY------EKLSPNGKLADFFANQDNASLLKPNATNAEVKTFLSGHA-----NTAID 178

Query: 162 QSMEIIRQRIDQIGISESTIQRLG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
           +S  IIR RID  G+    +Q+   ++RILI++PG QD  R+ +LL  +A++ F +V  N
Sbjct: 179 RSFTIIRSRIDGFGVVSPNMQKQEGTNRILIEMPGVQDKERVHKLLQGSAELQFWQVYNN 238

Query: 221 NSK 223
              
Sbjct: 239 EEV 241


>gi|229169154|ref|ZP_04296869.1| Protein-export membrane protein SecDF [Bacillus cereus AH621]
 gi|228614382|gb|EEK71492.1| Protein-export membrane protein SecDF [Bacillus cereus AH621]
          Length = 754

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 192/695 (27%), Positives = 333/695 (47%), Gaps = 23/695 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGADLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKEL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ +I LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ STI D+NIT + A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNQRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560
             +++ +   K +    +    +IP              I F+         SI+  I  
Sbjct: 410 GLLVKSRYFDKKLSYFGVKEKDIIPLTKGAVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + +   +S V  +L+ L I            +    
Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQATTVSNVHKDLKELNIDVKEEDIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I+++ +
Sbjct: 530 AVRTLGVLSKDEIAKTKTF----FNDKYGTEPNVSTVSPTIGKEIARNAFIAVLIASLVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF+  +A+ A+  L+ D    +  F+LF IE +LT +AA+LT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRLTYAVSAVIALLHDAFVMIVMFSLFQIEVDLTFIAAILTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++ +  G+VV   SSIF+A+ I L + + R K  +
Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRRLKRGK 740



 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 89/259 (34%), Gaps = 4/259 (1%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                 L V+     +         +             +      +    G+   ++  
Sbjct: 168 MPPPTNLMVIWLDFEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAK 227

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
                     +        +  VG K  ++ + + I    I    + +++ + ++    L
Sbjct: 228 ELSSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLP-GL 286

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A+  L L I  TL  F        L  +AA++  +G +V+  ++ Y+R+++ +K+    
Sbjct: 287 VAVIMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKI---G 343

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S           +L   +  ++    +   +  +G S +  FA  +   I+V   +++F
Sbjct: 344 KSMMSAFRAGNQRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVF 403

Query: 815 IAAPILLFIYDWRAKNARI 833
               +L  +   R  + ++
Sbjct: 404 GTRFLLGLLVKSRYFDKKL 422



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++    ++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|89895205|ref|YP_518692.1| hypothetical protein DSY2459 [Desulfitobacterium hafniense Y51]
 gi|89334653|dbj|BAE84248.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 736

 Score =  323 bits (827), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 234/703 (33%), Positives = 372/703 (52%), Gaps = 55/703 (7%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTA 210
              + +  +E++  II +R++++G+SE  IQ      RI++ L G QDP +  + L TTA
Sbjct: 57  GAAITADDVEKAKSIIEKRVNEMGLSEPVIQADLDKKRIIVDLAGVQDPDKAVEALKTTA 116

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           K++F                             +  V I G  L  A A    +++  VV
Sbjct: 117 KLTF--------------------------KDPQGNVVIEGGDLKDARAGQGERSY--VV 148

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            ++F   GA++F +VT  NIG+ + + LD ++L  P +  AI +G+A+I+G  ++E A  
Sbjct: 149 HLTFSPEGAKKFADVTSRNIGQNIGIYLDDQLLQNPQVQAAITNGQAEITGYASLEEAAQ 208

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
            A +LR+G+LP+ L+I E+R VGA LG DS+ K   A +  LV I+LFM+VLY   GLVA
Sbjct: 209 YAVLLRSGALPVSLSIEEKRTVGASLGVDSLNKSINAGIVALVFILLFMLVLYRLPGLVA 268

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
           + S+ +  ++ L  L   GA LTLP IAGI+L IG+AVD NI++ ERI+EE R  +S+  
Sbjct: 269 NISLIVFTLIVLWALKGFGAVLTLPGIAGILLSIGMAVDLNIIIYERIKEELRLGKSLRA 328

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           S++ GFSRA+ T+FDSNIT L A   LFF G  +++GFAIT+G+ I  S+FTAI+  R +
Sbjct: 329 SVEAGFSRAFLTVFDSNITTLFAAATLFFLGTSSIKGFAITLGIGIFASLFTAITFTRML 388

Query: 511 MIFIIRYKKMKSIDINPLSRFF----------------------LIPDCIAIQFMRARFW 548
           + +I+      +     + R                                  ++ R+ 
Sbjct: 389 LRWIVGINPRMNTAWFGVKRENDASGKKTGEATPATQAATYEDVKASMPFYFNVVKRRYI 448

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
              +S++    S+  LFT  LN G+DF GG  L +  ++ V    +   +ES+ +     
Sbjct: 449 WFALSLIMIAVSLGSLFTQKLNLGVDFTGGTMLDMKFSQQVTQEKITQAMESVGLEGPVV 508

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
           Q  D + + L+R      D   +     +   +             + VGP I +EL   
Sbjct: 509 QLSDNDTSALIRTSALEEDKRNE----LLTALQTQVGDFDKESLKEDKVGPAIGQELTEN 564

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             + + I+A+ ML+YI  RF++ +A+  I  L+ D+  T+G F+LF  E + T VAA+LT
Sbjct: 565 AFLSLAIAAVLMLVYIGFRFQFAYAVSGILALVHDVIITVGIFSLFQWEIDATFVAAILT 624

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           + GYS+ND VV++DR+R+N        S+ D++DKS+ + +GRS+ T +   IS+L + +
Sbjct: 625 IFGYSINDTVVIFDRIRENEPRLKRGDSYEDMVDKSVWQMMGRSIKTVLTVLISLLAIYI 684

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            GG     FA+ M  G++  A SS+F A+ IL+ I        
Sbjct: 685 LGGESTQGFALAMLIGVIAGAYSSVFNASQILVEIKKRMKPKR 727



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 18/137 (13%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+  +   +    ++  I ++ ++            P    +  ISLGLDLRGG HLVL+
Sbjct: 2   MKRGSILKLTAALLLIVIAVVFSIQ-----------PLTDSERGISLGLDLRGGVHLVLQ 50

Query: 60  V----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIAD 113
                D        ++     +   + + G+    ++   +  +I +  A  +  +   +
Sbjct: 51  AEPGPDGAAITADDVEKAKSIIEKRVNEMGLSEPVIQADLDKKRIIVDLAGVQDPDKAVE 110

Query: 114 KVTLFLQGVNSKLNVDP 130
            +    +        + 
Sbjct: 111 ALKTTAKLTFKDPQGNV 127


>gi|229062106|ref|ZP_04199431.1| Protein-export membrane protein SecDF [Bacillus cereus AH603]
 gi|228717258|gb|EEL68933.1| Protein-export membrane protein SecDF [Bacillus cereus AH603]
          Length = 754

 Score =  323 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 188/695 (27%), Positives = 327/695 (47%), Gaps = 23/695 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +               +        +       A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLDFEEGKDSYKAEAAKPNPKFLSA-----ATVSQVFNQAEVSIVGGNFTVESAKEL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ +I LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAMIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ STI D+N+T + A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLSTILDANVTTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560
             +++ +   K +    +    +IP              I F+         SI+  I  
Sbjct: 410 GLLVKSRYFDKKLSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + +   +S V  +L+ L I            +    
Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQATTVSNVHKDLKELNIDVKEEDIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTEPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF+  +A+ A+  L+ D    +  F+LF IE +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 VLYVSIRFRLTYAVSAVIALLHDAFVMMVVFSLFQIEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNSSIRQTIGRSINTVLTVLFPVITLLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++ +  G+VV   SSIF+A+ I L + + R K  +
Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRRLKRGK 740



 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 90/259 (34%), Gaps = 4/259 (1%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                 L V+     +         +             +      +    G+   ++  
Sbjct: 168 MPPPTNLMVIWLDFEEGKDSYKAEAAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAK 227

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
                     +        +  VG K  ++ + + I    I    + +++ + ++    L
Sbjct: 228 ELSSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAMIFLFMLVFYRLP-GL 286

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A+  L L I  TL  F        L  +AA++  +G +V+  ++ Y+R+++ +K+    
Sbjct: 287 VAVIMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKI---G 343

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S         + +L   +  ++    +   +  +G S +  FA  +   I+V   +++F
Sbjct: 344 KSMMSAFRAGNHRSLSTILDANVTTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVF 403

Query: 815 IAAPILLFIYDWRAKNARI 833
               +L  +   R  + ++
Sbjct: 404 GTRFLLGLLVKSRYFDKKL 422



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++    ++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|282875938|ref|ZP_06284805.1| protein-export membrane protein SecD [Staphylococcus epidermidis
           SK135]
 gi|281294963|gb|EFA87490.1| protein-export membrane protein SecD [Staphylococcus epidermidis
           SK135]
 gi|329724672|gb|EGG61178.1| export membrane protein SecD [Staphylococcus epidermidis VCU144]
 gi|329737172|gb|EGG73426.1| export membrane protein SecD [Staphylococcus epidermidis VCU028]
          Length = 741

 Score =  323 bits (826), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 175/697 (25%), Positives = 324/697 (46%), Gaps = 22/697 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G +D ++ R+LL T A 
Sbjct: 32  GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 91

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++      +    G        +     +                          +  V 
Sbjct: 92  LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 151

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           + + +      ++       +               IN +        +G   +E A  +
Sbjct: 152 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 211

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AGSLP+ L  +   +VGA  G D++ K   A + G+ LI LFM+  Y   GLVA 
Sbjct: 212 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 271

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 272 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 331

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R ++
Sbjct: 332 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 391

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++     K        +     D                + F++     + +SIL  I
Sbjct: 392 SLLVSSNFFKKQYWLFGVKKKDRHDINEGKDVHDLKTSYERLNFVKLAKPLISLSILIVI 451

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + ++    LN GIDF  G +  + +   +  + V   ++S+ +     Q         
Sbjct: 452 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSVGLEPDQIQINGSGNKNA 511

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +        ++   VK +  +            V P I +EL +  +  +I+++I
Sbjct: 512 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 565

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L ++  L+ D+   +  F+LF +E +LT +AAVLT++GYS+ND +
Sbjct: 566 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRLEVDLTFIAAVLTIVGYSINDTI 625

Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+      T +    D++++SI +T+ RS+ T +   + V+ + + G   I 
Sbjct: 626 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILILGAPTIF 685

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +F++ +  G++    SSIFIA P+   +   + K  +
Sbjct: 686 NFSLALLIGLLSGVFSSIFIAVPLWGMLKKRQFKKTK 722



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             ++LGLDL+GG  ++ +VD     D      LQ  S  L + +   G+    ++    N
Sbjct: 8   KNVNLGLDLQGGFEVLFQVDPLNKGDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPN 67

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSK 125
           +I +  A  + +      ++         
Sbjct: 68  RIRVQLAGIKDQAQARKLLSTQANLTIRD 96


>gi|75760570|ref|ZP_00740603.1| Protein translocase subunit secD / Protein translocase subunit secF
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228902939|ref|ZP_04067080.1| Protein-export membrane protein SecDF [Bacillus thuringiensis IBL
           4222]
 gi|228967487|ref|ZP_04128515.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|74491939|gb|EAO55122.1| Protein translocase subunit secD / Protein translocase subunit secF
           [Bacillus thuringiensis serovar israelensis ATCC 35646]
 gi|228792202|gb|EEM39776.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228856723|gb|EEN01242.1| Protein-export membrane protein SecDF [Bacillus thuringiensis IBL
           4222]
          Length = 754

 Score =  322 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 188/694 (27%), Positives = 328/694 (47%), Gaps = 23/694 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALDQTIFASAIGIALIFLFMLVYYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGTSSVQGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V ++ V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRMDLQSKQAVTVADVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNISTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +   + V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLLPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  +  G++V   SS+F+A+ I L + + R K  
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKRG 739



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|261418402|ref|YP_003252084.1| bifunctional preprotein translocase subunit SecD/SecF [Geobacillus
           sp. Y412MC61]
 gi|319767639|ref|YP_004133140.1| protein-export membrane protein SecD [Geobacillus sp. Y412MC52]
 gi|261374859|gb|ACX77602.1| protein-export membrane protein SecD [Geobacillus sp. Y412MC61]
 gi|317112505|gb|ADU94997.1| protein-export membrane protein SecD [Geobacillus sp. Y412MC52]
          Length = 750

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 182/692 (26%), Positives = 333/692 (48%), Gaps = 33/692 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    ++ ++  + +RI+ +G+SE  +   G +RI +QL G +D +  R++L T AK
Sbjct: 54  GDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNRIRVQLAGVKDQNEAREILSTQAK 113

Query: 212 MSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           ++F  V      +       G +   D +G   +     +                 +  
Sbjct: 114 LTFRDVNDNVLMDGSDLVQGGAKLSFDENGRPSVALKLKDADKFRQVTEKVYKMGPPNNI 173

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           +V     + G   + +              D + ++A  +NQ        I GNFT++ A
Sbjct: 174 LVIWLDFKEGVDSYRKEAGKA---------DPKFISAASVNQVFNQTDVSIVGNFTVKEA 224

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             LA +L AG+LP++L+ +   +VGA  G +++ K   A + G+  I LFMI  Y   G+
Sbjct: 225 QQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAGIIGVAAIFLFMIWFYRLPGI 284

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +A  ++ + + L L L   +   +TLP IA ++LG+G+AVD+NI+  ERI+EE +  +S+
Sbjct: 285 IAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAVDANIITYERIKEELKLGKSM 344

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             +   G   +++TIFD+N+T +IA  VLF +G  +V+GFA T+ +SI++S  TA+   R
Sbjct: 345 LSAFRAGNRGSFATIFDANLTTIIAGAVLFIYGTSSVKGFATTLIISIVVSFLTAVYGTR 404

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLI-------------PDCIAIQFMRARFWGVGISIL 555
            ++  ++  + +         +   I                    F++        S  
Sbjct: 405 LLLGLLVSSRWLDKKPEWFGVKKSEILNIAETTEETEVPTKFDRWDFVKHSQKFFIFSGA 464

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            +I  +  LF  GLN GIDF  G ++ V +++P+D   +    E L            + 
Sbjct: 465 LTIAGVISLFALGLNLGIDFTSGTRIEVTSSQPIDAKELSGYFERLGHKPEDVVLSGTDG 524

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V       D     ++   +K+            N   V P + ++L R  ++ V+I
Sbjct: 525 KTGVVRLIGVLDKQEIAKLKNELKQAYGSE------PNISTVSPVVGKQLARNALIAVLI 578

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S+I +++Y+ IRF+W  AL AI  L+ D    +  F++  +E +LT +AAVLT+IGYS+N
Sbjct: 579 SSIGIILYVTIRFEWRMALAAIVALLHDAFFIITVFSITRLEVDLTFIAAVLTIIGYSIN 638

Query: 736 DKVVVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           D +V +DR+R  M  +   T    + ++++++ +T  RSV T +    +V+ + ++G   
Sbjct: 639 DTIVTFDRIRDLMKKRKVKTVDDLKRIVNRALQQTFTRSVNTVLTVLFTVIALLIFGSEA 698

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           I +F + +  G+V    SS+ IA+ + +    
Sbjct: 699 IRNFNLALLVGLVCGVYSSLCIASQLWVVWKG 730



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/400 (11%), Positives = 107/400 (26%), Gaps = 31/400 (7%)

Query: 43  RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNK 97
            I LGLDL+GG  ++ EV      D      LQ     L   +   G+    +  +  N+
Sbjct: 31  NIKLGLDLQGGFEVLYEVKPAKKGDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNR 90

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I +  A  + +    + ++   +     +N +            ++    ++ + D+   
Sbjct: 91  IRVQLAGVKDQNEAREILSTQAKLTFRDVNDNVL------MDGSDLVQGGAKLSFDENGR 144

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            ++   ++   +                   I +      D  R          +S   V
Sbjct: 145 PSVALKLKDADKFRQVTEKVYKMGPPNNILVIWLDFKEGVDSYRKEAGKADPKFISAASV 204

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI-----------SGIHLNGATANFDPKTH 266
               ++        F          + +   +            G               
Sbjct: 205 NQVFNQTDVSIVGNFTVKEAQQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAG 264

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
              V   F  M            I   + + L   +     +   +P   A I G     
Sbjct: 265 IIGVAAIFLFMIWFYRLPGIIAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAV 324

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A I+        L +  +++     G      +I+      +    ++ ++        
Sbjct: 325 DANIITYERIKEELKLGKSMLSAFRAGNRGSFATIFDANLTTIIAGAVLFIY-------- 376

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
              +    F   ++   ++S L A      + G+++    
Sbjct: 377 -GTSSVKGFATTLIISIVVSFLTAVYGTRLLLGLLVSSRW 415


>gi|30022486|ref|NP_834117.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           cereus ATCC 14579]
 gi|29898044|gb|AAP11318.1| Protein translocase subunit SecD / Protein translocase subunit SecF
           [Bacillus cereus ATCC 14579]
          Length = 754

 Score =  321 bits (822), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 190/695 (27%), Positives = 328/695 (47%), Gaps = 23/695 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARYASIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFTMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  +  G++V   SS+F+A+ I L + + R K  R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKKGR 740



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|297529254|ref|YP_003670529.1| protein-export membrane protein SecD [Geobacillus sp. C56-T3]
 gi|297252506|gb|ADI25952.1| protein-export membrane protein SecD [Geobacillus sp. C56-T3]
          Length = 750

 Score =  321 bits (821), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 184/692 (26%), Positives = 332/692 (47%), Gaps = 33/692 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    ++ ++  + +RI+ +G+SE  +   G +RI +QL G +D +  RQ+L T AK
Sbjct: 54  GDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNRIRVQLAGVKDQNEARQILSTQAK 113

Query: 212 MSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           ++F  V      +       G +   D +G   +     +                 +  
Sbjct: 114 LTFRDVNDNVLMDGSDLVQGGAKLSFDENGRPSVALKLKDADKFRQVTEKVYKMGPPNNI 173

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           +V     + G   + +              D + ++A  +NQ        I GNFT++ A
Sbjct: 174 LVIWLDFQEGVDSYRKEAGKA---------DPKFISAASVNQVFNQTDVSIVGNFTVKEA 224

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             LA +L AG+LP++L+ +   +VGA  G +++ K   A + G+  I LFMI  Y   G+
Sbjct: 225 QQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAGIIGVAAIFLFMIWFYRLPGI 284

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +A  ++ + + L L L   +   +TLP IA ++LG+G+AVD+NI+  ERI+EE +  +S+
Sbjct: 285 IAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAVDANIITYERIKEELKLGKSM 344

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             +   G   +++TIFD+N+T +IA  VLF +G  +V+GFA T+ +SI++S  TA+   R
Sbjct: 345 LSAFRAGNRGSFATIFDANLTTIIAGAVLFIYGTSSVKGFATTLIISIVVSFLTAVYGTR 404

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLI-------------PDCIAIQFMRARFWGVGISIL 555
            ++  ++  + +         +   I                    F++        S  
Sbjct: 405 LLLGLLVSSRWLDKKPEWFGVKKSEILNIDETTEETEVPTKFDRWDFVKHSQKFFIFSGA 464

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            +I  +  LF  GLN GIDF  G ++ V +++P+D   +    E L            + 
Sbjct: 465 LTIAGVISLFALGLNLGIDFTSGTRVEVTSSQPIDAKELSGYFERLGYKPEDVVLSGTDG 524

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V       D     ++   +K+            N   V P + ++L R  ++ V+I
Sbjct: 525 KTGVVRLIGVLDKQEIAKLKNELKQAYG------NEPNISTVSPVVGKQLARNALIAVLI 578

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S+I +++Y+ IRF+W  AL AI  L+ D    +  F+L  +E +LT +AAVLT+IGYS+N
Sbjct: 579 SSIGIILYVTIRFEWRMALAAIVALLHDAFFIVTVFSLTRLEVDLTFIAAVLTIIGYSIN 638

Query: 736 DKVVVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           D +V +DR+R  M  +   T    + ++++++ +T  RSV T +    +V+ + ++G   
Sbjct: 639 DTIVTFDRIRDLMKKRKVKTVDDLKHIVNRALQQTFTRSVNTVLTVLFTVIALLIFGSEA 698

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           I +F + +  G V    SS+ IA+ + +    
Sbjct: 699 IRNFNLALLVGFVCGVYSSLCIASQLWVVWKG 730



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/400 (11%), Positives = 106/400 (26%), Gaps = 31/400 (7%)

Query: 43  RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNK 97
            I LGLDL+GG  ++ EV      D      LQ     L   +   G+    +  +  N+
Sbjct: 31  NIKLGLDLQGGFEVLYEVKPAKKGDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNR 90

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I +  A  + +      ++   +     +N +            ++    ++ + D+   
Sbjct: 91  IRVQLAGVKDQNEARQILSTQAKLTFRDVNDNVL------MDGSDLVQGGAKLSFDENGR 144

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            ++   ++   +                   I +      D  R          +S   V
Sbjct: 145 PSVALKLKDADKFRQVTEKVYKMGPPNNILVIWLDFQEGVDSYRKEAGKADPKFISAASV 204

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI-----------SGIHLNGATANFDPKTH 266
               ++        F          + +   +            G               
Sbjct: 205 NQVFNQTDVSIVGNFTVKEAQQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAG 264

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
              V   F  M            I   + + L   +     +   +P   A I G     
Sbjct: 265 IIGVAAIFLFMIWFYRLPGIIAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAV 324

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A I+        L +  +++     G      +I+      +    ++ ++        
Sbjct: 325 DANIITYERIKEELKLGKSMLSAFRAGNRGSFATIFDANLTTIIAGAVLFIY-------- 376

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
              +    F   ++   ++S L A      + G+++    
Sbjct: 377 -GTSSVKGFATTLIISIVVSFLTAVYGTRLLLGLLVSSRW 415


>gi|242242909|ref|ZP_04797354.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus epidermidis W23144]
 gi|242233624|gb|EES35936.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus epidermidis W23144]
          Length = 763

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 176/697 (25%), Positives = 323/697 (46%), Gaps = 22/697 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G +D ++ R+LL T A 
Sbjct: 54  GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++      +    G        +     +                          +  V 
Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           + + +      ++       +               IN +        +G   +E A  +
Sbjct: 174 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 233

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AGSLP+ L  +   +VGA  G D++ K   A + G+ LI LFM+  Y   GLVA 
Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 293

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 294 IALTAYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R ++
Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++     K        +     D                + F++     + +SIL  I
Sbjct: 414 SLLVSSNFFKKQYWLFGVKKKNRHDINEGKDVHDLKTSYEKLNFVKLAKPLISLSILIVI 473

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + ++    LN GIDF  G +  + +   +  + V   ++S  +     Q         
Sbjct: 474 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSAGLEPDQIQINGSGNKNA 533

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +        ++   VK +  +            V P I +EL +  +  +I+++I
Sbjct: 534 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 587

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND +
Sbjct: 588 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRIEVDLTFIAAVLTIVGYSINDTI 647

Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+      T +    D++++SI +T+ RS+ T +   + V+ + + G   I 
Sbjct: 648 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVSILILGAPTIF 707

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +F++ +  G++    SSIFIA P+   +   + K  +
Sbjct: 708 NFSLALLIGLLSGVFSSIFIAVPLWGMLKKRQFKKTK 744



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65
           + + I  + LL        ++++           ++LGLDL+GG  ++ +VD     D  
Sbjct: 7   IIAFILLVALLFTGMGMTYKNVV---------KNVNLGLDLQGGFEVLFQVDPLNKGDKI 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
               LQ  S  L + +   G+    ++    N+I +  A  + +      ++        
Sbjct: 58  DKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117

Query: 125 K 125
            
Sbjct: 118 D 118


>gi|228910247|ref|ZP_04074065.1| Protein-export membrane protein SecDF [Bacillus thuringiensis IBL
           200]
 gi|228849411|gb|EEM94247.1| Protein-export membrane protein SecDF [Bacillus thuringiensis IBL
           200]
          Length = 754

 Score =  321 bits (821), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 189/694 (27%), Positives = 327/694 (47%), Gaps = 23/694 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVSLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNISTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  +  G++V   SS+F+A+ I L + + R K  
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKRG 739



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|218899580|ref|YP_002447991.1| protein-export membrane protein SecDF [Bacillus cereus G9842]
 gi|218543778|gb|ACK96172.1| protein-export membrane protein SecDF [Bacillus cereus G9842]
          Length = 754

 Score =  320 bits (820), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 189/694 (27%), Positives = 328/694 (47%), Gaps = 23/694 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +       A      K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFRAVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V ++ V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVADVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNISTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  +  G++V   SS+F+A+ I L + + R K  
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRRLKRG 739



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|56421117|ref|YP_148435.1| bifunctional preprotein translocase subunit SecD/SecF [Geobacillus
           kaustophilus HTA426]
 gi|56380959|dbj|BAD76867.1| preprotein translocase subunits D and F [Geobacillus kaustophilus
           HTA426]
          Length = 750

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 183/692 (26%), Positives = 333/692 (48%), Gaps = 33/692 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    ++ ++  + +RI+ +G+SE  +   G +RI +QL G +D +  R++L T AK
Sbjct: 54  GDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNRIRVQLAGVKDQNEAREILSTQAK 113

Query: 212 MSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           ++F  V      +       G +   D +G   +     +                 +  
Sbjct: 114 LTFRDVNDNVLMDGSDLVQGGAKLSFDENGRPSVALKLKDADKFRQVTEKVYKMGPPNNI 173

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           +V     + G   + +              D + ++A  +NQ        I GNFT++ A
Sbjct: 174 LVIWLDFKEGVDSYRKEAGKA---------DPKFISAASVNQVFNQTDVSIVGNFTVKEA 224

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             LA +L AG+LP++L+ +   +VGA  G +++ K   A + G+  I LFMI  Y   G+
Sbjct: 225 QQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAGIIGVAAIFLFMIWFYRLPGI 284

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +A  ++ + + L L L   +   +TLP IA ++LG+G+AVD+NI+  ERI+EE +  +S+
Sbjct: 285 IAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAVDANIITYERIKEELKLGKSM 344

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             +   G   +++TIFD+N+T +IA  VLF +G  +V+GFA T+ +SI++S  TA+   R
Sbjct: 345 LSAFRAGNRGSFATIFDANLTTIIAGAVLFIYGTSSVKGFATTLIISIVVSFLTAVYGTR 404

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLI-------------PDCIAIQFMRARFWGVGISIL 555
            ++  ++  + +         +   I                    F++        S  
Sbjct: 405 LLLGLLVSSRWLDKKPEWFGVKKSEILNIAETTEETEVPTKFDRWDFVKHSKKFFIFSGA 464

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            +I  +  LF  GLN GIDF  G ++ V +++P+D   +    E L            + 
Sbjct: 465 LTIAGVISLFALGLNLGIDFTSGTRVEVTSSQPIDAKELSRYFERLGYKPEDVVLSGTDG 524

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V       D     ++   +K+            N   V P + ++L R  ++ V+I
Sbjct: 525 KTGVVRLIGVLDKQEIAKLKNELKQAYG------NEPNISTVSPVVGKQLARNALIAVLI 578

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S+I +++Y+ IRF+W  AL AI  L+ D    +  F+L  +E +LT +AAVLT+IGYS+N
Sbjct: 579 SSIGIILYVTIRFEWRMALAAIVALLHDAFFIITVFSLTRLEVDLTFIAAVLTIIGYSIN 638

Query: 736 DKVVVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           D +V +DR+R  M  +   T    + ++++++ +T  RSV T +    +V+ + ++G   
Sbjct: 639 DTMVTFDRIRDLMKKRKVKTVDDLKHIVNRALQQTFTRSVNTVLTVLFTVIALLIFGSEA 698

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           I +F + +  G+V    SS+ IA+ + +    
Sbjct: 699 IRNFNLALLVGLVCGVYSSLCIASQLWVVWKG 730



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/400 (11%), Positives = 107/400 (26%), Gaps = 31/400 (7%)

Query: 43  RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNK 97
            I LGLDL+GG  ++ EV      D      LQ     L   +   G+    +  +  N+
Sbjct: 31  NIKLGLDLQGGFEVLYEVKPAKKGDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGGNR 90

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I +  A  + +    + ++   +     +N +            ++    ++ + D+   
Sbjct: 91  IRVQLAGVKDQNEAREILSTQAKLTFRDVNDNVL------MDGSDLVQGGAKLSFDENGR 144

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            ++   ++   +                   I +      D  R          +S   V
Sbjct: 145 PSVALKLKDADKFRQVTEKVYKMGPPNNILVIWLDFKEGVDSYRKEAGKADPKFISAASV 204

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI-----------SGIHLNGATANFDPKTH 266
               ++        F          + +   +            G               
Sbjct: 205 NQVFNQTDVSIVGNFTVKEAQQLADLLNAGALPVELHEIYSTSVGAQFGKNALQKTVLAG 264

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
              V   F  M            I   + + L   +     +   +P   A I G     
Sbjct: 265 IIGVAAIFLFMIWFYRLPGIIAVITLSVYIYLILLLFDWMNVVMTLPGIAALILGVGMAV 324

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A I+        L +  +++     G      +I+      +    ++ ++        
Sbjct: 325 DANIITYERIKEELKLGKSMLSAFRAGNRGSFATIFDANLTTIIAGAVLFIY-------- 376

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
              +    F   ++   ++S L A      + G+++    
Sbjct: 377 -GTSSVKGFATTLIISIVVSFLTAVYGTRLLLGLLVSSRW 415


>gi|326336745|ref|ZP_08202913.1| protein-export membrane protein SecD/SecF [Capnocytophaga sp. oral
            taxon 338 str. F0234]
 gi|325691215|gb|EGD33186.1| protein-export membrane protein SecD/SecF [Capnocytophaga sp. oral
            taxon 338 str. F0234]
          Length = 1037

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 196/848 (23%), Positives = 364/848 (42%), Gaps = 99/848 (11%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSFADSRFKENIADKVTLFLQGVN 123
            V+  +    + LR  + K G+    ++++ N  +I++    ++    + + +    Q   
Sbjct: 187  VDESISSAFEVLRKRIDKFGVTNPDIKKLGNSGRISVELPGAKDISRVKNLLQSTAQLEF 246

Query: 124  SKL----------------------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
             +                           K      T+ +    + +    D +  + ++
Sbjct: 247  WETFKAADFSSFFSQLNAALQAKETPQTAKSKTEEATSSQATDTLSTLAKSDTLAHNEVD 306

Query: 162  QSMEIIRQRIDQIGISESTIQRLGSHRILIQ------------------LPGEQDPSRLR 203
              +    Q+ D I  +E             +                       D  RL+
Sbjct: 307  SLLNKTAQKKDSITPAEKNPLFDLFQLTQGESSPSIGYFLASDTTKLLSYLHSDDAKRLQ 366

Query: 204  QLLGTTAKMSF--------------------------HKVLPNNSKKGFMFGVRFLRDSD 237
                  AK  F                           +      +   +     L +  
Sbjct: 367  PAELKNAKFVFGKPHKLTDLQQLYRMFMSFEYEQAYPAEAKNFKDRLQGLLRKSDLVELY 426

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI---GKPL 294
              +    ++  ++G  +           ++P V ++ D  GA+ +  +T       G   
Sbjct: 427  ALRGNRNNEPPLNGSVVTE-ATQTYDNHNQPCVSMNMDIKGAKIWENLTGKVFTEKGNIA 485

Query: 295  AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
             V+ +       V    I  G  QI+GNFT+  A  LA +LRAG LP   +IV+   VG 
Sbjct: 486  IVLDNIVYSAPSVTTGPISGGSTQITGNFTVAEAQDLANVLRAGKLPASADIVQSVIVGP 545

Query: 355  DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
             LG ++I  G  +     ++I  +M++ YG+ G+ AD ++  N++L   +L  + + LTL
Sbjct: 546  SLGQEAITSGFISFAIAGLIIFFWMLLYYGRVGVFADIALLFNILLMFGILVSINSVLTL 605

Query: 415  PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            P IAGIVL IG+++D+N+++ ERIREE R  + +  ++  GFS A +++ D+NIT  +  
Sbjct: 606  PGIAGIVLTIGMSIDANVIIFERIREELRTGKILSQAVHDGFSHAITSVLDANITTFLTG 665

Query: 475  VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             VLF FG G ++GFA T+ + I+ ++FTA+ I R ++   +   K  S   +       I
Sbjct: 666  AVLFVFGSGPIKGFATTLMIGIITTIFTAVFITRLLIDNYVAKGKDLSFSTSFSKN---I 722

Query: 535  PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               + I F+  R     +S +  + S+  +FT G + GIDF GG    +    PV    +
Sbjct: 723  LTNVEIDFLSKRKIWYIVSSILILISLGSMFTRGFDQGIDFVGGRSYQIRFKNPVKTEEI 782

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL--------------EMVKK 640
               L++ ++G +  + F       +  +Y+  D   QT                   +  
Sbjct: 783  SRILKAGKLGSVEVKTFGSANQVRISTKYKYNDESTQTDNEIQQILYEDLKPVMGADISY 842

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                      +  ++  GP I+ ++    +  +I S + +  YI +RF+ W F++GA+  
Sbjct: 843  DEFMSGEGLGVMKSDKTGPSIAEDIKSSAVWAIIGSLVIIFGYILVRFRKWQFSMGAVAA 902

Query: 700  LILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  D+T TLG F+L      F +E +   +AA+LT+IGYS+ND V+++DR+R+ +     
Sbjct: 903  LTHDVTITLGAFSLLYSVMPFSLEIDQQFIAAILTVIGYSLNDTVIIFDRIREEVGKGGW 962

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
              S   +++ +I+ TL R++ TS+   +++L + ++GG  +  F   M  G+VV   SSI
Sbjct: 963  KAS---VLNHAISTTLSRTLNTSLTTLLTLLAIFIFGGETLRGFMFAMIIGVVVGTYSSI 1019

Query: 814  FIAAPILL 821
            F+A P++ 
Sbjct: 1020 FVATPLVY 1027



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/179 (21%), Positives = 76/179 (42%), Gaps = 16/179 (8%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE-LRSFLKKEGIGVFSMRQIQNKIT 99
              +  GLDL+GG ++ L+V   D + G      +      L +    +      Q+ I 
Sbjct: 85  DRELKEGLDLKGGINVTLQVSVHDILRGLADNSKNANFEKALAQADKRLRE--TDQSYID 142

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           L F          +     L   +   N      +    +  ++  ++      + +  +
Sbjct: 143 LFF-------EAFEATGAKLSAADIFGNKILSAQITPQMSNSQVQPII-----RRKVDES 190

Query: 160 IEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           I  + E++R+RID+ G++     +   S RI ++LPG +D SR++ LL +TA++ F + 
Sbjct: 191 ISSAFEVLRKRIDKFGVTNPDIKKLGNSGRISVELPGAKDISRVKNLLQSTAQLEFWET 249


>gi|242373937|ref|ZP_04819511.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus epidermidis M23864:W1]
 gi|242348291|gb|EES39893.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus epidermidis M23864:W1]
          Length = 763

 Score =  320 bits (819), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 170/696 (24%), Positives = 322/696 (46%), Gaps = 22/696 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            +++   A++ + + +  R++ +G+SE  IQ    +RI +QL G +D ++ R++L T A 
Sbjct: 54  GEKIDKKALQATSQTLESRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKMLSTQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++      +    G        +     +                          +  V 
Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           + + +      ++       +               IN          +G   ++ A  +
Sbjct: 174 VVWMDFKKGDSYKKEAKKQQEGKEPKYVSAANVDQPINSDSVEISGGFNGKKGVKEAKQI 233

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           + +L AGSLP+ L  +   +VGA  G D++ K   A   G+ +I LFM+  Y   GLVA 
Sbjct: 234 SELLNAGSLPVDLKEIYSNSVGAQFGQDALNKTIFASFIGVAIIYLFMLGFYRLPGLVAI 293

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R ++
Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDC-------------IAIQFMRARFWGVGISILFSI 558
             ++     K        +     D                  F++     + +SIL  +
Sbjct: 414 NLLVSSNFFKKQYWLFGVKKKDRHDMNDGKDVHDLKTSFEKWNFVKLAKPLIALSILIVV 473

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + +L    LN GIDF  G +  + A +P+  + V   ++ + +     Q         
Sbjct: 474 VGLVILAVFKLNLGIDFSSGTRADINAKQPLTQAKVEKAVKDVGLEPDQIQINGSSNKGA 533

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +        ++ + +K +  +            V P I +EL +  I  +I++++
Sbjct: 534 TVQFKKDLSRAEDNKLSDKIKSEFGDT------PQINTVSPLIGQELAKNAITALILASL 587

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L A+  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND +
Sbjct: 588 GIIIYVSLRFEWRMGLSAVLALLHDVFIIVAVFSLFRIEVDLTFIAAVLTIVGYSINDTI 647

Query: 739 VVYDRMRKNMKLYTTSISFRDL---IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+       S   +   +++SI +T+ RS+ T +   + V+ + ++G   I 
Sbjct: 648 VTFDRVRENLHKLKVITSPEQIDDMVNRSIRQTMTRSINTVLTVVVVVVAILIFGAPTIF 707

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +F++ +  G++    SS+FIA P+   +   + K +
Sbjct: 708 NFSLALLIGLISGVFSSVFIAVPLWGIMKKRQLKKS 743



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/394 (11%), Positives = 103/394 (26%), Gaps = 28/394 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +  LV    ++  +    A      ++++           ++LGLDL+GG  ++ +V
Sbjct: 1   MKKSSRLVAFILLVVLL---FAGMGLTYKNVV---------KNVNLGLDLQGGFEVLFQV 48

Query: 61  DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKV 115
           D     +      LQ  S  L S +   G+    ++    N+I +  A  + +      +
Sbjct: 49  DPLHKGEKIDKKALQATSQTLESRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKML 108

Query: 116 TLFLQGVNSKLNVDPKKNL--LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +                +   +   + K+     +          + ++  ++  +   +
Sbjct: 109 STQANLTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKK 168

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
                             +   +Q   +  + +                  GF       
Sbjct: 169 RDNVMVVWMDFKKGDSYKKEAKKQQEGKEPKYVSAANVDQPINSDSVEISGGFNGKKGVK 228

Query: 234 RDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
                ++ L    + +          G        N         V I +  M       
Sbjct: 229 EAKQISELLNAGSLPVDLKEIYSNSVGAQFGQDALNKTIFASFIGVAIIYLFMLGFYRLP 288

Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
                I     + L             +P   A + G      A I+        L I  
Sbjct: 289 GLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGR 348

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378
            + +  +        +I+      V    ++  F
Sbjct: 349 TLKQAYSKANKSSFLTIFDSNLTTVIAAAVLFFF 382


>gi|57867140|ref|YP_188776.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus epidermidis RP62A]
 gi|251811042|ref|ZP_04825515.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus epidermidis BCM-HMP0060]
 gi|57637798|gb|AAW54586.1| protein-export membrane protein SecDF [Staphylococcus epidermidis
           RP62A]
 gi|251805418|gb|EES58075.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus epidermidis BCM-HMP0060]
          Length = 763

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 175/697 (25%), Positives = 324/697 (46%), Gaps = 22/697 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G +D ++ R+LL T A 
Sbjct: 54  GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++      +    G        +     +                          +  V 
Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           + + +      ++       +               IN +        +G   +E A  +
Sbjct: 174 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 233

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AGSLP+ L  +   +VGA  G D++ K   A + G+ LI LFM+  Y   GLVA 
Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 293

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R ++
Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++     K        +     D                + F++     + +SIL  I
Sbjct: 414 SLLVSSNFFKKQYWLFGVKKKDRHDINEGKDVHDLKTSYERLNFVKLAKPLISLSILIVI 473

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + ++    LN GIDF  G +  + +   +  + V   ++S+ +     Q         
Sbjct: 474 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSVGLEPDQIQINGSGNKNA 533

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +        ++   VK +  +            V P I +EL +  +  +I+++I
Sbjct: 534 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 587

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L ++  L+ D+   +  F+LF +E +LT +AAVLT++GYS+ND +
Sbjct: 588 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRLEVDLTFIAAVLTIVGYSINDTI 647

Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+      T +    D++++SI +T+ RS+ T +   + V+ + + G   I 
Sbjct: 648 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILILGAPTIF 707

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +F++ +  G++    SSIFIA P+   +   + K  +
Sbjct: 708 NFSLALLIGLLSGVFSSIFIAVPLWGMLKKRQFKKTK 744



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65
           + + I  I LL        ++++           ++LGLDL+GG  ++ +VD     D  
Sbjct: 7   IIAFILLIALLFTGMGMTYKNVV---------KNVNLGLDLQGGFEVLFQVDPLNKGDKI 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
               LQ  S  L + +   G+    ++    N+I +  A  + +      ++        
Sbjct: 58  DKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117

Query: 125 K 125
            
Sbjct: 118 D 118


>gi|304382430|ref|ZP_07364929.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella
           marshii DSM 16973]
 gi|304336438|gb|EFM02675.1| bifunctional preprotein translocase subunit SecD/SecF [Prevotella
           marshii DSM 16973]
          Length = 996

 Score =  320 bits (819), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 218/831 (26%), Positives = 381/831 (45%), Gaps = 66/831 (7%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGV 122
           V   +      +RS + K G+   ++++    + +I +     R  E I   +       
Sbjct: 166 VEAAIDNSYTVVRSRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERIRKLLQGSANLE 225

Query: 123 NSKLNVDPK-----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +     +       L       E S   ++ +       A + + +   +   +    
Sbjct: 226 FWETYNSQEVMPYLTQLDQRMANGETSTDATKADSVSKPKDATQTTAKPAAKFQIKKDTK 285

Query: 178 ESTIQRLGSHRILIQ-----------------------LPGEQDPSRLRQLLGTTAKMSF 214
            + +                                      +D + + +++ +      
Sbjct: 286 TADVAAKSFDAQQEAAKKQHPLLSIFQPTGGQSLSLVGYAHVRDTAAIDKIIHSEIAKEI 345

Query: 215 HKVLPNNSKKGFMFGVRFLRDSD----GNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
                              ++              +  + G  +  A   FD    +P V
Sbjct: 346 IPSDMKLLWSAKPADGLNNKNVYELHAIKVTSATGRAPLEGDVVTDAKDEFDQMG-RPCV 404

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +S +  GAR + ++T++NIGK +A+VLDG V +AP ++  I  G +QISGNFTIE    
Sbjct: 405 SMSMNSEGARLWAQLTKNNIGKAIAIVLDGVVYSAPRVSNEIDGGNSQISGNFTIEDTKD 464

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLV 389
           L   L++G +P    IV+E  VG  LG+ SI +G  + V   ++++++MIV+Y    G++
Sbjct: 465 LTNTLKSGRMPAPARIVQEEVVGPTLGAQSIQQGIVSFVIAFIILMVYMIVMYNFIPGMM 524

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ +N+  TL +L+   A LT+P IAGIVL +G+AVD+N+L+ ER +EE ++   + 
Sbjct: 525 ANIALLVNLFFTLGILTSFQAALTMPGIAGIVLTLGMAVDANVLIYERTKEEMKRGLDIK 584

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +L  G+S A+S IFDSN+T+++  ++L+ FG G +RGFA T+ + I+ S FTA+ + R 
Sbjct: 585 QALAAGYSNAFSAIFDSNLTSILTGIILYVFGTGPIRGFATTLIIGIVCSFFTAVYLTRL 644

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +    ++  K +++         L+ + +   FM+A         +  +  I   F +GL
Sbjct: 645 VYENRMKKDKWRNLTFTTPISKNLLQN-VHFDFMKASKTSFLFCAVAIVIFIGSFFVNGL 703

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           +  IDF GG    V   +PV+   VR+ L     G  +     G     +R+        
Sbjct: 704 SKSIDFTGGRNYVVKFEKPVEPEQVRAALAKAFPGANTGALALGTDGKTIRISTNYKIES 763

Query: 630 AQTRVLEMVKKKI--------------------TEIVPLSTIQNTEIVGPKISRELIRKG 669
               V +  +  +                     +I    +I ++  VGP +++++    
Sbjct: 764 NSPTVDDEAETILFHALSKAGMVTQKSVEAFKDPDIRKGGSIISSTKVGPSVAKDITYGA 823

Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL------FGIEFNLTA 722
           IV V+++ IA+ IYI IRF+   F+LG+   L +D T  +G ++L      F +E + T 
Sbjct: 824 IVSVVLAIIAIFIYILIRFRNVSFSLGSTIALAIDATVVIGLYSLLYKVVPFSLEIDQTF 883

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+LT+IGYS+NDKVVV+DR+R+N+ L+      R L + SIN+TL R+V TS +  I 
Sbjct: 884 IGAILTVIGYSINDKVVVFDRIRENLNLH-KKQGHRSLFNDSINQTLARTVNTSFSTLIV 942

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +L +   GG  I SF+  M  G+V    SSIFIAAPI       +     +
Sbjct: 943 LLSIFFLGGDSIRSFSFAMILGVVFGTISSIFIAAPIAYLTMSKKNDKEEL 993



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 94/254 (37%), Gaps = 38/254 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALP----NFLPQSMLDRFPSAMPK--------------- 41
           M+N   +++   ++    +         N+  +           +               
Sbjct: 1   MQNKGIVIVTAVLLTLASIFYLSFSVATNYYDKEAEKIKDPIAQQDYKDSVKYLGIYSYQ 60

Query: 42  ----NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
                +I LGLDL+GG +++LE+   D +       +D   +F+K            Q+ 
Sbjct: 61  KCLETQIGLGLDLKGGMNVILEISVPDVIEVLADHKTD--MAFVKSMDEAKKEEETSQSD 118

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
               F     +     ++               K  +   +++ E      +  +   + 
Sbjct: 119 FISLFIKYYHQNAPGHRLAEIFAT------QQLKGKVTTQSSDSE-----VEKALRSEVE 167

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            AI+ S  ++R RID+ G+ +  IQ+      RI++++PG ++P R+R+LL  +A + F 
Sbjct: 168 AAIDNSYTVVRSRIDKFGVVQPNIQKLEGQEGRIMVEMPGVREPERIRKLLQGSANLEFW 227

Query: 216 KVLPNNSKKGFMFG 229
           +   +     ++  
Sbjct: 228 ETYNSQEVMPYLTQ 241


>gi|229158026|ref|ZP_04286097.1| Protein-export membrane protein SecDF [Bacillus cereus ATCC 4342]
 gi|228625479|gb|EEK82235.1| Protein-export membrane protein SecDF [Bacillus cereus ATCC 4342]
          Length = 754

 Score =  320 bits (818), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDHSALVSTVGALENRVNALGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ +I LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGTSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEVLYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D   +  L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDHSALVSTVGALENRVNALGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|328950385|ref|YP_004367720.1| protein-export membrane protein SecD [Marinithermus hydrothermalis
           DSM 14884]
 gi|328450709|gb|AEB11610.1| protein-export membrane protein SecD [Marinithermus hydrothermalis
           DSM 14884]
          Length = 739

 Score =  320 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 213/684 (31%), Positives = 370/684 (54%), Gaps = 26/684 (3%)

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLRQLLGTTAKMSFHKV 217
           +E+   +I  RI+ +G++E  IQ  G++R+LI+LP   ++D  +  +L+G  A + F  V
Sbjct: 59  LERVRTVIENRINALGVAEPLIQIQGTNRVLIELPGLSQEDQDKALKLIGQRAVLEFRVV 118

Query: 218 LP----------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
                       N   +      R   ++   +        ++G  L  A   F     +
Sbjct: 119 KEDATGLTVAQINEQLRRNPNLDRSELEARLMKLEDLGPPLLTGADLETANTVF-DSFGR 177

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
           P V ++F   GA++F EVTR N+G+ LA+VLDGRV +APVI QAI  G+A I G  ++E 
Sbjct: 178 PQVSMTFTPEGAKKFAEVTRANVGRRLAIVLDGRVYSAPVIRQAILDGQAVIDGLGSLEE 237

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KW 386
           A  +A +LR+GSLP+ +++ E R +G  LG+D+I  G  A V G +LI + + + YG  +
Sbjct: 238 ASEIALVLRSGSLPVAVHVEELRAIGPTLGADAIRSGVIASVVGGLLIFVVIFLYYGPWF 297

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           GLVA   +    +L L +LS LGATLTLP IAG++L IG AVD N+L  ERI+EE R ++
Sbjct: 298 GLVASLGLIYTAVLVLGMLSGLGATLTLPGIAGLILTIGAAVDGNVLSFERIKEELRYDK 357

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
            +  ++  GF  +  TI D+NI+ L+A   L+ +  G VRGFA+ + + I+ ++F+ +  
Sbjct: 358 KLRQAIPDGFRHSIVTILDANISTLLAAAALYQYATGPVRGFAVMLSIGIIAAVFSNLVF 417

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
            R ++  I +  +++                  I F++        +++ ++ +  ++FT
Sbjct: 418 SRYLLERIAQRGEVR---------LPYWIWGTRIPFLKHARVITRATLVLALVAAGVVFT 468

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN--FDGEKNFLVRLQYQ 624
            G NYGIDF GG    +     V +  VR+ L+   I  +S ++      ++ +   +  
Sbjct: 469 KGFNYGIDFTGGTAYLIRTPSTVGVEDVRAFLDEAGIEGVSGKDAVITAVQSPISDAREY 528

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                  ++   +    + +    + +  +E VGP +  EL R  ++ V+     +LIY+
Sbjct: 529 SVRVGVLSQEARLQLAGLFQEKLNAEVLQSETVGPAVGAELRRNTVLAVLAGLGLILIYM 588

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             RF W F + +I  +  D+  T G F+L G+EF +  VAA+LT+IGYS+ND +++ DR+
Sbjct: 589 AFRFDWVFGVASIIAVGHDVAITAGVFSLLGLEFTIPIVAALLTIIGYSINDSIILSDRI 648

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+N+++    +S+++L+D +IN+TL R+V TS    + +  +   GG V+  F++ +  G
Sbjct: 649 RENLRVM-RGVSYQELVDTAINQTLSRTVMTSFTTLLPLFSLFFIGGPVLRDFSLAILVG 707

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V   SSI++ + ++++      
Sbjct: 708 IFVGTYSSIYVVSALVVWWKTREQ 731



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 48/144 (33%), Gaps = 14/144 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR N    IL   +    LL     + P              ++ LGLDL+GG  +VL+ 
Sbjct: 1   MRRNTVTGILLLGVFLAALLGIWKPWAPAEP-----------KVKLGLDLKGGLRIVLQT 49

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFAD--SRFKENIADKVTL 117
           D+ +     L+     + + +   G+    ++    N++ +         ++     +  
Sbjct: 50  DDPEPDPDDLERVRTVIENRINALGVAEPLIQIQGTNRVLIELPGLSQEDQDKALKLIGQ 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEK 141
                   +  D     +    E+
Sbjct: 110 RAVLEFRVVKEDATGLTVAQINEQ 133


>gi|42783542|ref|NP_980789.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           cereus ATCC 10987]
 gi|42739471|gb|AAS43397.1| protein-export membrane protein SecDF [Bacillus cereus ATCC 10987]
          Length = 754

 Score =  320 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 191/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  S++  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNVGHKFLIFSLVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     VL + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVLALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|27468238|ref|NP_764875.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus epidermidis ATCC 12228]
 gi|27315784|gb|AAO04919.1|AE016748_153 protein-export membrane protein SecDF [Staphylococcus epidermidis
           ATCC 12228]
          Length = 763

 Score =  320 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 175/697 (25%), Positives = 324/697 (46%), Gaps = 22/697 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G +D ++ R+LL T A 
Sbjct: 54  GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++      +    G        +     +                          +  V 
Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           + + +      ++       +               IN +        +G   +E A  +
Sbjct: 174 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 233

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AGSLP+ L  +   +VGA  G D++ K   A + G+ LI LFM+  Y   GLVA 
Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 293

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R ++
Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++     K        +     D                + F++     + +SIL  I
Sbjct: 414 SLLVSSNFFKKQYWLFGVKKKDRHDINESKDVHDLKTSYERLNFVKLAKPLISLSILIVI 473

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + ++    LN GIDF  G +  + +   +  + V   ++S+ +     Q         
Sbjct: 474 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSVGLEPDQIQINGSGNKNA 533

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +        ++   VK +  +            V P I +EL +  +  +I+++I
Sbjct: 534 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 587

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L ++  L+ D+   +  F+LF +E +LT +AAVLT++GYS+ND +
Sbjct: 588 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRLEVDLTFIAAVLTIVGYSINDTI 647

Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+      T +    D++++SI +T+ RS+ T +   + V+ + + G   I 
Sbjct: 648 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILILGAPTIF 707

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +F++ +  G++    SSIFIA P+   +   + K  +
Sbjct: 708 NFSLALLIGLLSGVFSSIFIAVPLWGMLKKRQFKKTK 744



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65
           + + I  I LL        ++++           ++LGLDL+GG  ++ +VD     D  
Sbjct: 7   IIAFILLIALLFTGMGMTYKNVV---------KNVNLGLDLQGGFEVLFQVDPLNKGDKI 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
               LQ  S  L + +   G+    ++    N+I +  A  + +      ++        
Sbjct: 58  DKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117

Query: 125 K 125
            
Sbjct: 118 D 118


>gi|228987663|ref|ZP_04147776.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772066|gb|EEM20519.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 754

 Score =  320 bits (818), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIEVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|293366406|ref|ZP_06613085.1| protein-export membrane protein SecDF [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319531|gb|EFE59898.1| protein-export membrane protein SecDF [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|329733750|gb|EGG70076.1| export membrane protein SecD [Staphylococcus epidermidis VCU045]
          Length = 763

 Score =  320 bits (818), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 175/697 (25%), Positives = 324/697 (46%), Gaps = 22/697 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G +D ++ R+LL T A 
Sbjct: 54  GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++      +    G        +     +                          +  V 
Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           + + +      ++       +               IN +        +G   +E A  +
Sbjct: 174 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 233

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AGSLP+ L  +   +VGA  G D++ K   A + G+ LI LFM+  Y   GLVA 
Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 293

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R ++
Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++     K        +     D                + F++     + +SIL  I
Sbjct: 414 SLLVSSNFFKKQYWLFGVKKMDRHDINEGKDVHDLKTSYERLNFVKLAKPLISLSILIVI 473

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + ++    LN GIDF  G +  + +   +  + V   ++S+ +     Q         
Sbjct: 474 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSVGLEPDQIQINGSGNKNA 533

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +        ++   VK +  +            V P I +EL +  +  +I+++I
Sbjct: 534 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 587

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L ++  L+ D+   +  F+LF +E +LT +AAVLT++GYS+ND +
Sbjct: 588 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRLEVDLTFIAAVLTIVGYSINDTI 647

Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+      T +    D++++SI +T+ RS+ T +   + V+ + + G   I 
Sbjct: 648 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILILGAPTIF 707

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +F++ +  G++    SSIFIA P+   +   + K  +
Sbjct: 708 NFSLALLIGLLSGVFSSIFIAVPLWGMLKKRQFKKTK 744



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65
           + + I  I LL        ++++           ++LGLDL+GG  ++ +VD     D  
Sbjct: 7   IIAFILLIALLFTGMGMTYKNVV---------KNVNLGLDLQGGFEVLFQVDPLNKGDKI 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
               LQ  S  L + +   G+    ++    N+I +  A  + +      ++        
Sbjct: 58  DKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117

Query: 125 K 125
            
Sbjct: 118 D 118


>gi|206975966|ref|ZP_03236876.1| protein-export membrane protein SecDF [Bacillus cereus H3081.97]
 gi|217961902|ref|YP_002340472.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           cereus AH187]
 gi|229141150|ref|ZP_04269691.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST26]
 gi|206745718|gb|EDZ57115.1| protein-export membrane protein SecDF [Bacillus cereus H3081.97]
 gi|217064404|gb|ACJ78654.1| protein-export membrane protein SecDF [Bacillus cereus AH187]
 gi|228642313|gb|EEK98603.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST26]
          Length = 754

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  S++  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNVGHKFLIFSLVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|47566600|ref|ZP_00237422.1| protein-export membrane protein secDF [Bacillus cereus G9241]
 gi|47556630|gb|EAL14962.1| protein-export membrane protein secDF [Bacillus cereus G9241]
          Length = 754

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 191/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIEVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|229105049|ref|ZP_04235701.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-28]
 gi|228678359|gb|EEL32584.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-28]
          Length = 754

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 188/690 (27%), Positives = 325/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDHSALVSTVGALENRVNALGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFRDVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKEL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ +I LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGVAIIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT + A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTIAAAGVLFVYGTSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+         SI   I  
Sbjct: 410 SLLVKSRYFDKKPSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFFLFSIAVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + + V ++ V  + + L I            +    
Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQAVTVADVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF+  +A+ A+  L+ D    +  F+LF IE +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 VLYVSIRFRLTYAVSAVIALLHDAFVMIVVFSLFRIEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDLKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++ +  G+VV   SSIF+A+ I L + + R
Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRR 735


>gi|222097856|ref|YP_002531913.1| bifunctional preprotein translocase subunit secd/secf [Bacillus
           cereus Q1]
 gi|229198539|ref|ZP_04325242.1| Protein-export membrane protein SecDF [Bacillus cereus m1293]
 gi|221241914|gb|ACM14624.1| protein-export membrane protein secdf [Bacillus cereus Q1]
 gi|228584924|gb|EEK43039.1| Protein-export membrane protein SecDF [Bacillus cereus m1293]
          Length = 754

 Score =  319 bits (817), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 189/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|282864623|ref|ZP_06273678.1| protein-export membrane protein SecD [Streptomyces sp. ACTE]
 gi|282560562|gb|EFB66109.1| protein-export membrane protein SecD [Streptomyces sp. ACTE]
          Length = 775

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 206/720 (28%), Positives = 349/720 (48%), Gaps = 37/720 (5%)

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                + +    ++       + ++++E++RQR+D +G++E T+ R G  RI+++LP  Q
Sbjct: 35  QGGTRMVLQAKDSDTATADRDSTDRTLEVLRQRVDSLGVAEPTLTRSGEDRIIVELPDVQ 94

Query: 198 DPSRLRQLLGTTAKMSFHKV---------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           DP +  ++LG TA++SFH V               +G           +    L    V 
Sbjct: 95  DPRQAAEVLGKTAQLSFHPVQGPGTEPAADDKEKDEGEGSKAGPTLPDEQGDLLALGPVR 154

Query: 249 ISGIHLNGATANFD-PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD-------- 299
           +SG  +  ATA+FD  +     V + F +   +++  +T +    P+             
Sbjct: 155 LSGAGVKDATASFDAQQGTGWSVSLDFHKDAGKKWTGLTGEAACNPVQDERRRVAIVLDG 214

Query: 300 -----GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                 +V  +   N  +PSG  QI+G+F  + A  LA +++ GSLP+ + IVE+R VG 
Sbjct: 215 KVISSPQVSPSVGCNVGLPSGSTQITGSFGADEARDLALLIKGGSLPVPVEIVEQRIVGP 274

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG+ +I     A + G     LF+ V+Y  +G +A  ++    +++ A L +LG TLTL
Sbjct: 275 TLGAAAIDASARAALIGAAATALFITVMYRLFGALAALALAAYGVISYAALVVLGVTLTL 334

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           P +AG VL IG+AVD+N+LV ER REE   R N+++  +L  GF  A+S + DSN+T LI
Sbjct: 335 PGLAGFVLAIGMAVDANVLVFERAREECADRPNRTLLSALTAGFRGAWSAVADSNVTTLI 394

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPL 528
           A  +LFF G G V+GF +T+ + ++ SMF+A+ I RA+       + +        I   
Sbjct: 395 AAGLLFFLGSGPVKGFGVTLAIGVIASMFSALVIARALTEIAAGSRFVSGYRGVNGIARP 454

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                  +    Q  R+    +  S +    ++  +   G+N G++F GG  +    +RP
Sbjct: 455 GAVRTRLNARDPQLFRSPRRWLAFSAVLVAVAVAGIVVRGVNLGVEFTGGRLVEYSTSRP 514

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           VD+   R  L +   GD                                V+  + E    
Sbjct: 515 VDVEKARDALSTAGFGDAEVTTAGDGD-------LSVRTGKLDDDGERAVRAALAEEGGE 567

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           +T    E++GP +  EL R  ++ + ++    L Y+  RF+W FA+ ++  L+ D+   +
Sbjct: 568 ATKIRDELIGPSLGDELRRNALIALGVAVFVQLAYLAARFRWTFAVASVGALVHDVIILV 627

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G FA  G   +   +AA+LT+IGYSVND VVV+DR+R+ +   +      D+ ++++ +T
Sbjct: 628 GAFAWLGRTVDGIFLAALLTVIGYSVNDSVVVFDRVRE-LWAKSRRTPLPDIANRAVLQT 686

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + R+V T M A   +  +AV GG  +  FA+ +  GI V   SS+  A P  L +     
Sbjct: 687 VPRTVNTGMGALFILAALAVLGGDSLADFALALLIGICVGTYSSVMTAVPGALLLETSSK 746


>gi|52141095|ref|YP_085734.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           cereus E33L]
 gi|51974564|gb|AAU16114.1| protein-export membrane protein, subunit D and subunit F [Bacillus
           cereus E33L]
          Length = 754

 Score =  319 bits (816), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 188/690 (27%), Positives = 325/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                          N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGIDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G++V   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|229093482|ref|ZP_04224585.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-42]
 gi|228689953|gb|EEL43757.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-42]
          Length = 754

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   G+VA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGIVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|228917047|ref|ZP_04080607.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228842654|gb|EEM87742.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 754

 Score =  319 bits (816), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 189/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|229175085|ref|ZP_04302602.1| Protein-export membrane protein SecDF [Bacillus cereus MM3]
 gi|228608381|gb|EEK65686.1| Protein-export membrane protein SecDF [Bacillus cereus MM3]
          Length = 754

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 188/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +          +   K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSADKFREVTDKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   G+VA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGIVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFVTNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPAYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|30264481|ref|NP_846858.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           anthracis str. Ames]
 gi|47529939|ref|YP_021288.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49187301|ref|YP_030553.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           anthracis str. Sterne]
 gi|65321777|ref|ZP_00394736.1| COG0342: Preprotein translocase subunit SecD [Bacillus anthracis
           str. A2012]
 gi|165871968|ref|ZP_02216609.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0488]
 gi|167636504|ref|ZP_02394801.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0442]
 gi|167640701|ref|ZP_02398961.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0193]
 gi|170688674|ref|ZP_02879879.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0465]
 gi|170709261|ref|ZP_02899681.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0389]
 gi|177653983|ref|ZP_02936024.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0174]
 gi|190567058|ref|ZP_03019974.1| protein-export membrane protein SecDF [Bacillus anthracis
           Tsiankovskii-I]
 gi|227817189|ref|YP_002817198.1| protein-export membrane protein SecDF [Bacillus anthracis str. CDC
           684]
 gi|229601600|ref|YP_002868697.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0248]
 gi|254684166|ref|ZP_05148026.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           anthracis str. CNEVA-9066]
 gi|254724663|ref|ZP_05186446.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           anthracis str. A1055]
 gi|254736513|ref|ZP_05194219.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           anthracis str. Western North America USA6153]
 gi|254741551|ref|ZP_05199238.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           anthracis str. Kruger B]
 gi|254751350|ref|ZP_05203387.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           anthracis str. Vollum]
 gi|254757682|ref|ZP_05209709.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           anthracis str. Australia 94]
 gi|30259139|gb|AAP28344.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           Ames]
 gi|47505087|gb|AAT33763.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49181228|gb|AAT56604.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           Sterne]
 gi|164712258|gb|EDR17794.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0488]
 gi|167511273|gb|EDR86659.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0193]
 gi|167528097|gb|EDR90894.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0442]
 gi|170125837|gb|EDS94744.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0389]
 gi|170667360|gb|EDT18118.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0465]
 gi|172081038|gb|EDT66116.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0174]
 gi|190562049|gb|EDV16018.1| protein-export membrane protein SecDF [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005997|gb|ACP15740.1| protein-export membrane protein SecDF [Bacillus anthracis str. CDC
           684]
 gi|229266008|gb|ACQ47645.1| protein-export membrane protein SecDF [Bacillus anthracis str.
           A0248]
          Length = 754

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|118479568|ref|YP_896719.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           thuringiensis str. Al Hakam]
 gi|196044831|ref|ZP_03112065.1| protein-export membrane protein SecDF [Bacillus cereus 03BB108]
 gi|225866392|ref|YP_002751770.1| protein-export membrane protein SecDF [Bacillus cereus 03BB102]
 gi|229186650|ref|ZP_04313811.1| Protein-export membrane protein SecDF [Bacillus cereus BGSC 6E1]
 gi|118418793|gb|ABK87212.1| protein translocase subunit secD [Bacillus thuringiensis str. Al
           Hakam]
 gi|196024319|gb|EDX62992.1| protein-export membrane protein SecDF [Bacillus cereus 03BB108]
 gi|225787197|gb|ACO27414.1| protein-export membrane protein SecDF [Bacillus cereus 03BB102]
 gi|228596909|gb|EEK54568.1| Protein-export membrane protein SecDF [Bacillus cereus BGSC 6E1]
          Length = 754

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 187/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI +FM+V Y   G+VA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFVFMLVFYRLPGIVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G++V   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|228473366|ref|ZP_04058120.1| bifunctional preprotein translocase subunit SecD/SecF [Capnocytophaga
            gingivalis ATCC 33624]
 gi|228275268|gb|EEK14066.1| bifunctional preprotein translocase subunit SecD/SecF [Capnocytophaga
            gingivalis ATCC 33624]
          Length = 1048

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 198/746 (26%), Positives = 345/746 (46%), Gaps = 34/746 (4%)

Query: 109  ENIADKVTLFLQGVNSKLNVDPKK--NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
              +   +    Q  +S          +L   T  +    +      D     +  +S E 
Sbjct: 303  NEVDSLLNKTAQKKDSLAPAQKNPLFDLFQFTNGENSPSIAYFLAADTTKLLSYLKSDEA 362

Query: 167  IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
             R +  ++  ++    +      L QL     P    Q     AK  F + L +  ++  
Sbjct: 363  KRLQPAELKYAKFVFGKPHKLTDLQQLYRMFWPYEAEQADPANAK-KFKERLQSLLRRSD 421

Query: 227  MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
            +  +  LR +  N+  +   V    +             +         E    + F   
Sbjct: 422  LVELYALRGNRTNEPPLTGSVVTEAVQTYDNHNQPCVSMNMNREGAKLWENLTGKVFTER 481

Query: 287  RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
             +        V     +T+  I+     G  QI+GNFT+  A  LA +LRAG LP   +I
Sbjct: 482  GNIAITLDNTVYSAPTVTSGPIS----GGSTQITGNFTVAEAQDLANVLRAGKLPASADI 537

Query: 347  VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            V+   VG  LG ++I  G  +     ++I L+M+V YG+ G+ AD ++  N++L   +L 
Sbjct: 538  VQSVIVGPSLGQEAITSGFISFAIAGLIIFLWMLVYYGRAGIFADIALVFNILLMFGILV 597

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
             + + LTLP IAGIVL IG+++D+N+++ ERIREE R  +S+  S+  GFS A +++ D+
Sbjct: 598  SINSVLTLPGIAGIVLTIGMSIDANVIIFERIREELRNGKSLTQSIHDGFSHAITSVLDA 657

Query: 467  NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            NIT  +   VLF FG G ++GFA T+ + I+ ++FTA+ I R ++ + +   K  S   +
Sbjct: 658  NITTFLTGAVLFVFGSGPIKGFATTLMIGIVTTIFTAVFITRLLIDWYVAKGKELSFTTS 717

Query: 527  PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                   I     I F+  R     IS +  + S+  +FT G + GIDF GG    +   
Sbjct: 718  ISKN---ILVNPNIDFLSKRKVWYSISAIMILISLGSMFTRGFDQGIDFVGGRSYQIRFK 774

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL----------- 635
             PV    + S L++ ++G +  + F       +  +Y+  D   QT              
Sbjct: 775  NPVKTEEIASLLKAGKLGSVEVKTFGAANQVRISTKYKYNDESTQTDNEIQEILYNDLQP 834

Query: 636  ---EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
               E +  +         +  ++  GP I+ ++    +  +I S I +  YI +RF+ W 
Sbjct: 835  VMGEKISYEEFMSGEGLGVMKSDKTGPSIAEDIKSSAVWAIIGSLIIIFGYILVRFRKWQ 894

Query: 692  FALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            F++GA+  L  D+  TLG F+L      F +E +   +AA+LT+IGYS+ND V+++DR+R
Sbjct: 895  FSMGAVAALTHDVIITLGAFSLLYSVMPFSLEIDQQFIAAILTVIGYSLNDTVIIFDRIR 954

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
            + + L   S +    ++ +++ TL R++ TS+   +++L + ++GG  +  F   M  G+
Sbjct: 955  EEIGLKGWSANT---LNHAVSTTLSRTLNTSLTTLLTLLAIFIFGGETLRGFMFAMIIGV 1011

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            VV   SSIF+A P++      R + A
Sbjct: 1012 VVGTYSSIFVATPLVYDTSKNRKEEA 1037



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/179 (21%), Positives = 78/179 (43%), Gaps = 16/179 (8%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKIT 99
              +  GLDL+GG ++ L++   D +    +   + +    L +    +      Q+ I 
Sbjct: 85  DRELKEGLDLKGGINVTLQISVHDILRSLAENSKNADFEKALDQADKRLRE--TDQSYID 142

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           L F          D     L   +   N      +    +  ++  +L      + I  +
Sbjct: 143 LFF-------EAFDATGAKLSAPDIFGNKTLSAQITPQMSNSQVQPIL-----RKKIDES 190

Query: 160 IEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           I+ + E++R+RID+ G++     +   S RI ++LPG +D SR++ LL +TA++ F + 
Sbjct: 191 IDSAFEVLRKRIDKFGVTNPDIKKLGNSGRISVELPGAKDISRVKNLLQSTAQLEFWET 249


>gi|169829367|ref|YP_001699525.1| bifunctional preprotein translocase subunit SecD/SecF
           [Lysinibacillus sphaericus C3-41]
 gi|168993855|gb|ACA41395.1| Protein-export membrane protein [Lysinibacillus sphaericus C3-41]
          Length = 741

 Score =  318 bits (815), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 186/696 (26%), Positives = 332/696 (47%), Gaps = 27/696 (3%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
              ++    +  +   +  R++ IG+SE +IQ  G +RI +QL G +D    R+LL T+A
Sbjct: 39  AGQKITPEVVAATATALGNRVNAIGVSEPSIQVEGENRIRVQLAGVEDQESARKLLSTSA 98

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            ++F  V  N    G           +G     + +              F   T K   
Sbjct: 99  NLTFRDVDDNLLLDGNDLK------ENGASASFDQQNRPIVSLKLKDAGKFADVTSKIAA 152

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
             +   +           +  K  +     R  +A  ++Q + +    ISG+F+++    
Sbjct: 153 KPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTLNTTDVMISGSFSVDETKN 212

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           L+ +L AG+LP+KL+ +   +VGA  G +++     A + G+V+I LFM+  Y   G+++
Sbjct: 213 LSGILNAGALPVKLDEIYSTSVGAQFGDEALKSTIFAGIVGVVIIFLFMLFYYRLPGVIS 272

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ +   L L +   + A LTLP IA IVLGIG+AVD+NIL  ERIREE R   S   
Sbjct: 273 IITLVVFTFLVLVVFDWINAVLTLPGIAAIVLGIGMAVDANILAAERIREELRVGYSAKQ 332

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +  +G  ++ S I D+ +T L+A  +LF+FG  +V+GFA T+ +SIL+S  TA+   R +
Sbjct: 333 AFQIGSKQSLSAIVDAQLTTLLAAGILFYFGTSSVKGFATTLIISILLSFLTAVWGSRVL 392

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAI------------QFMRARFWGVGISILFSI 558
           + F++      +     +++         I             F+  R      S+   +
Sbjct: 393 LGFLVNSGYFNNPAWYGIAKSKQHSLEENIGTLDLTTKFDRFDFVHNRKKFYTFSLAILV 452

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + ++    LN GIDF  G ++ + A + +    +   ++S+            +    
Sbjct: 453 AGLVVIGIFRLNLGIDFSSGTRIQIEAEQTLTQEEMAKFVDSIGFPSEDIVLSGEKSTSA 512

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V                +++K +               V P + +EL++  I  + ++A+
Sbjct: 513 VIRYKSDLSQA------DILKFQKETTDKYGHKPTVSTVSPTVGKELVKNAIKALSLAAL 566

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF+W   +GAI +L+ D+   +  F+   +E ++T +AAVLT++GYS+ND +
Sbjct: 567 GIIIYVAIRFEWRMGIGAIVSLLHDVFLIVAVFSFMRLEVDITFIAAVLTIVGYSINDTI 626

Query: 739 VVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DRMR+N+  Y T        D+++KS+ +T+GRSV T +   I V+ + ++G   I 
Sbjct: 627 VTFDRMRENLDRYDTINDRELLADIVNKSLRQTMGRSVNTVLTVIIVVIALLIFGAPSIQ 686

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +F+I +  G++    SSI IAA I   +     K +
Sbjct: 687 NFSIALLIGLITGMYSSICIAAQIWYSLKIREMKKS 722



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 80/696 (11%), Positives = 178/696 (25%), Gaps = 34/696 (4%)

Query: 42  NRISLGLDLRGGSHLVLEVD----EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             I LGLDL+GG  ++ EV+            +   +  L + +   G+   S++    N
Sbjct: 16  KDIKLGLDLQGGFEVLYEVNELKAGQKITPEVVAATATALGNRVNAIGVSEPSIQVEGEN 75

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    +E+    ++         ++ +   +      E   S    Q N   V 
Sbjct: 76  RIRVQLAGVEDQESARKLLSTSANLTFRDVDDNLLLDG-NDLKENGASASFDQQNRPIVS 134

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
               +               +   +  +           + +  + +    + A +S   
Sbjct: 135 LKLKDAGKFADVTSKIAAKPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTL 194

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS------GIHLNGATANFDPKTHKPVV 270
              +    G          S                    G                  V
Sbjct: 195 NTTDVMISGSFSVDETKNLSGILNAGALPVKLDEIYSTSVGAQFGDEALKSTIFAGIVGV 254

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            I F  M            I   +   L   V         +P   A + G      A I
Sbjct: 255 VIIFLFMLFYYRLPGVISIITLVVFTFLVLVVFDWINAVLTLPGIAAIVLGIGMAVDANI 314

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LAA      L +  +  +   +G+     +I       +    ++  F       +    
Sbjct: 315 LAAERIREELRVGYSAKQAFQIGSKQSLSAIVDAQLTTLLAAGILFYFGTSSVKGFATTL 374

Query: 391 DFSIFLNVILTLALLSLL------GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             SI L+ +  +    +L            P+  GI      +++ NI   +   + +R 
Sbjct: 375 IISILLSFLTAVWGSRVLLGFLVNSGYFNNPAWYGIAKSKQHSLEENIGTLDLTTKFDRF 434

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITAL----IATVVLFFFGGGAVRGFAITMGLSILISM 500
           +          F      I  + +  +    +   + F  G         T+    +   
Sbjct: 435 DFVHN---RKKFYTFSLAILVAGLVVIGIFRLNLGIDFSSGTRIQIEAEQTLTQEEMAKF 491

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
             +I      ++          I          I         +        ++  ++  
Sbjct: 492 VDSIGFPSEDIVLSGEKSTSAVIRYKSDLSQADILKFQKETTDKYGHKPTVSTVSPTVGK 551

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +               I + +     + +  + S L  + +    F     E +    
Sbjct: 552 ELVKNAIKALSLAALGIIIYVAIRFEWRMGIGAIVSLLHDVFLIVAVFSFMRLEVDITFI 611

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                    +    +    +    +    TI + E++   +++ L +     V      +
Sbjct: 612 AAVLTIVGYSINDTIVTFDRMRENLDRYDTINDRELLADIVNKSLRQTMGRSVNTVLTVI 671

Query: 681 LIYIWIR---------FKWYFALGAITTLILDITKT 707
           ++ I +          F     +G IT +   I   
Sbjct: 672 IVVIALLIFGAPSIQNFSIALLIGLITGMYSSICIA 707


>gi|229163359|ref|ZP_04291311.1| Protein-export membrane protein SecDF [Bacillus cereus R309803]
 gi|228620140|gb|EEK77014.1| Protein-export membrane protein SecDF [Bacillus cereus R309803]
          Length = 754

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 186/690 (26%), Positives = 324/690 (46%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G +RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSADKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +               +        +       A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLDFEEGKDSYKAEAAKPNPKFLSA-----ATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + + +S V  + + L+I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQALTVSDVHKDFKELKIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNTSIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++    N+I +  A  + ++   + ++   
Sbjct: 54  KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|49481498|ref|YP_038461.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|196034487|ref|ZP_03101896.1| protein-export membrane protein SecDF [Bacillus cereus W]
 gi|218905606|ref|YP_002453440.1| protein-export membrane protein SecDF [Bacillus cereus AH820]
 gi|228935731|ref|ZP_04098544.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228948125|ref|ZP_04110409.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123952|ref|ZP_04253144.1| Protein-export membrane protein SecDF [Bacillus cereus 95/8201]
 gi|49333054|gb|AAT63700.1| protein-export membrane protein, subunit D and subunit F [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|195993029|gb|EDX56988.1| protein-export membrane protein SecDF [Bacillus cereus W]
 gi|218537000|gb|ACK89398.1| protein-export membrane protein SecDF [Bacillus cereus AH820]
 gi|228659254|gb|EEL14902.1| Protein-export membrane protein SecDF [Bacillus cereus 95/8201]
 gi|228811483|gb|EEM57820.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228823969|gb|EEM69788.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 754

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 186/690 (26%), Positives = 325/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   G+VA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGIVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++  +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSILQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G++V   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|229192622|ref|ZP_04319583.1| Protein-export membrane protein SecDF [Bacillus cereus ATCC 10876]
 gi|228590929|gb|EEK48787.1| Protein-export membrane protein SecDF [Bacillus cereus ATCC 10876]
 gi|324328314|gb|ADY23574.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 754

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|301055919|ref|YP_003794130.1| protein-export membrane protein subunit D/F [Bacillus anthracis CI]
 gi|300378088|gb|ADK06992.1| protein-export membrane protein, subunit D and subunit F [Bacillus
           cereus biovar anthracis str. CI]
          Length = 754

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 188/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI +FM+V Y   G+VA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFVFMLVFYRLPGIVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|228929456|ref|ZP_04092477.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228830244|gb|EEM75860.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 754

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 185/690 (26%), Positives = 325/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI +FM+V Y   G+VA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFVFMLVFYRLPGIVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTKFDRINFVNVGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++  +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSILQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G++V   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|229135235|ref|ZP_04264033.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST196]
 gi|228648213|gb|EEL04250.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST196]
          Length = 755

 Score =  318 bits (814), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 189/690 (27%), Positives = 325/690 (47%), Gaps = 22/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGADLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +               +         L      A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLDFEEGKDSYKAEAAKPNNPKFLSA----ATVSQVFNQAEVSIVGGNFTVESAKEL 230

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ +I LFM+V Y   GLVA 
Sbjct: 231 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 290

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 291 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 350

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ STI D+NIT + A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 351 FRAGNHRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 410

Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560
             +++ +   K +    +    +IP              I F+         SI+  I  
Sbjct: 411 GLLVKSRYFDKKLSYFGVKEKDIIPLTKGAVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 470

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + +   +S V  +L+ L I            +    
Sbjct: 471 AIILPIFKMNLGIDFASGTRIDLQSKQATTVSNVHKDLKELNIDVKEEDIVPTGDDNKGF 530

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 531 AVRTVGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 586

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF+  +A+ A+  L+ D    +  F+LF IE +LT +AAVLT+IGYS+ND +V 
Sbjct: 587 VLYVSIRFRLTYAVSAVIALLHDAFVMMVVFSLFQIEVDLTFIAAVLTIIGYSINDSIVT 646

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 647 FDRNRELYKQKKRVRDIKDLEEIVNSSIRQTIGRSINTVLTVLFPVITLLIFGSESLRNF 706

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++ +  G+VV   SSIF+A+ I L + + R
Sbjct: 707 SLALLIGLVVGTYSSIFVASQIWLMLENRR 736



 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 91/261 (34%), Gaps = 6/261 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                 + + +      D     +   +      +           V +        +  
Sbjct: 169 PPPTNLMVIWLDFEEGKDSYKAEAAKPNNPKFLSAATVSQVFNQAEVSIVGGNFTVESAK 228

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +  ++      +           VG K  ++ + + I    I    + +++ + ++   
Sbjct: 229 ELSSLLNAGALPVDLKEMYS--TSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLP- 285

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L A+  L L I  TL  F        L  +AA++  +G +V+  ++ Y+R+++ +K+  
Sbjct: 286 GLVAVIMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKI-- 343

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              S         + +L   +  ++    +   +  +G S +  FA  +   I+V   ++
Sbjct: 344 -GKSMMSAFRAGNHRSLSTILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITN 402

Query: 813 IFIAAPILLFIYDWRAKNARI 833
           +F    +L  +   R  + ++
Sbjct: 403 VFGTRFLLGLLVKSRYFDKKL 423



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++    ++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|223044139|ref|ZP_03614178.1| putative protein-export membrane protein SecD [Staphylococcus
           capitis SK14]
 gi|222442533|gb|EEE48639.1| putative protein-export membrane protein SecD [Staphylococcus
           capitis SK14]
          Length = 763

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 173/696 (24%), Positives = 320/696 (45%), Gaps = 22/696 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            +++   A++ +   +  R++ +G+SE  IQ    +RI +QL G +D ++ R+LL T A 
Sbjct: 54  GEKIDKKALQATSRTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++      +    G        +     +                          +  V 
Sbjct: 114 LTIRDAQDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKEKFKKVTEKISKKRDNVM 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           + + +      ++       +               IN          +G   ++ A  +
Sbjct: 174 VVWMDYKKGDSYKKEAKKQQEGKDPKYVSAANVDQPINSDSVEISGGFNGKKGVKEAKQI 233

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ +I LFM+  Y   GLVA 
Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASFIGVGIIYLFMLGFYRLPGLVAI 293

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L ILI   TA+ + R ++
Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILIIFVTAVFLSRGLL 413

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++     K        +     D                  F++     + +SIL  I
Sbjct: 414 SLLVSSNFFKKKYWLFGVKKKDRHDINEGKDVHDLKTSFEKWNFVKLAKPLIALSILIVI 473

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + +L    LN GIDF  G +  +  N+ +    V   ++ + +     Q         
Sbjct: 474 VGLVILSIFKLNLGIDFSSGTRADIETNQSLTQGKVEKAVKDVGLSPDQVQINGSGHKNA 533

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +        ++ + +K +  +            V P I +EL +  +  +I+++I
Sbjct: 534 TVQFKKNLSRAEDNKLSDKIKSEFGDT------PQINSVSPLIGQELAKNAMTALILASI 587

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L A+  L+ D+   +  F+LF +E +LT +AAVLT++GYS+ND +
Sbjct: 588 GIIIYVSLRFEWRMGLSAVLALLHDVFIIVAVFSLFRLEVDLTFIAAVLTIVGYSINDTI 647

Query: 739 VVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+       S     D++++SI +T+ RS+ T +   + V+ + ++G   I 
Sbjct: 648 VTFDRVRENLHKVKVVTSPEQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILIFGAPTIF 707

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +F++ +  G++    SS+FIA P+   +   + K +
Sbjct: 708 NFSLALLIGLISGVFSSVFIAVPLWGIMKKRQLKKS 743



 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 77/178 (43%), Gaps = 4/178 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             VG +  ++ + K I    I    + +++   ++    L AI  L   I  TL  F   
Sbjct: 252 NSVGAQFGQDALDKTIFASFIGVGIIYLFMLGFYRLP-GLVAIIALTTYIYLTLVAFNFI 310

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                L  +AA++  +G +V+  +++Y+R++  +++     + +    K+   +      
Sbjct: 311 SGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI---GRTLKQAYSKANKSSFLTIFD 367

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +++   I+   +  +G S +  FA  +  GI++   +++F++  +L  +        +
Sbjct: 368 SNLTTVIAAAVLFFFGESSVKGFATMLLLGILIIFVTAVFLSRGLLSLLVSSNFFKKK 425



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 77/742 (10%), Positives = 187/742 (25%), Gaps = 50/742 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65
           L + I  + LL        ++++           ++LGLDL+GG  ++ +V+     +  
Sbjct: 7   LIAFILLVALLFTGMGLTYKNVV---------KNVNLGLDLQGGFEVLYQVNPLDKGEKI 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
               LQ  S  L + +   G+    ++    N+I +  A  + +      ++        
Sbjct: 58  DKKALQATSRTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117

Query: 125 KLNVDPKKNL--LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                   +   +   + K+     +          + E+  ++  +   +         
Sbjct: 118 DAQDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKEKFKKVTEKISKKRDNVMVVWM 177

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    +   +Q   +  + +                  GF             + L
Sbjct: 178 DYKKGDSYKKEAKKQQEGKDPKYVSAANVDQPINSDSVEISGGFNGKKGVKEAKQIAELL 237

Query: 243 VEDKVEIS---------GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
               + +          G        +         V I +  M            I   
Sbjct: 238 NAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASFIGVGIIYLFMLGFYRLPGLVAIIALT 297

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             + L             +P   A + G      A I+        L I   + +  +  
Sbjct: 298 TYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQAYSKA 357

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                 +I+      V    ++              A   +   +I+ +  + L    L+
Sbjct: 358 NKSSFLTIFDSNLTTVIAAAVL---FFFGESSVKGFATMLLLGILIIFVTAVFLSRGLLS 414

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM--GFSRAYSTIFDSNITAL 471
           L   +                   I E       +  S +       A   I  S +  +
Sbjct: 415 LLVSSNFFKKKYWLFGVKKKDRHDINEGKDV-HDLKTSFEKWNFVKLAKPLIALSILIVI 473

Query: 472 IATVVL----------FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           +  V+L          F  G  A      ++    +      + +    +       K  
Sbjct: 474 VGLVILSIFKLNLGIDFSSGTRADIETNQSLTQGKVEKAVKDVGLSPDQVQINGSGHKNA 533

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           ++                             S+   I                    I +
Sbjct: 534 TVQFKKNLSRAEDNKLSDKIKSEFGDTPQINSVSPLIGQELAKNAMTALILASIGIIIYV 593

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +     + LS V + L  + I    F  F  E +             +    +    + 
Sbjct: 594 SLRFEWRMGLSAVLALLHDVFIIVAVFSLFRLEVDLTFIAAVLTIVGYSINDTIVTFDRV 653

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV------IISAIAMLIY---IWIRFKWYF 692
              +  +  + + E +   ++R + +     +      ++  +A+LI+       F    
Sbjct: 654 RENLHKVKVVTSPEQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILIFGAPTIFNFSLAL 713

Query: 693 ALGAITTLILDITKTLGFFALF 714
            +G I+ +   +   +  + + 
Sbjct: 714 LIGLISGVFSSVFIAVPLWGIM 735


>gi|239827850|ref|YP_002950474.1| bifunctional preprotein translocase subunit SecD/SecF [Geobacillus
           sp. WCH70]
 gi|239808143|gb|ACS25208.1| protein-export membrane protein SecD [Geobacillus sp. WCH70]
          Length = 750

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 191/696 (27%), Positives = 339/696 (48%), Gaps = 27/696 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    ++ ++  + +RI+ +G+SE  IQ  G +RI +QL G +D ++ R++L T AK
Sbjct: 54  GDKIDKETLKSTVSALNKRINVLGVSEPNIQIEGKNRIRVQLAGIKDQNQAREILSTQAK 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + S          +++              K   P   
Sbjct: 114 LTFRDVHDNVLMDGSDLVQGGAKLSFDENGKPSVAIKLKDADKFKQVTEKVYKMGPPNNL 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +               ++     A   D + ++A  +NQ        I GNFT++ A  L
Sbjct: 174 LVIW------LDFKEGEDSYAKEAGKADPKFISAAAVNQVFAQTDVSIVGNFTVKEAQQL 227

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AG+LP++L  +   +VGA  G +++ K   A + G+  I LFMI+ Y   G++A 
Sbjct: 228 ADLLNAGALPVELKEIYSTSVGAQFGQNALQKTIFAGIVGVAAIFLFMILFYRLPGVIAV 287

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + + L L +   +   LTLP IA +VLG+G+AVD+NI+  ERI+EE +  +SV  +
Sbjct: 288 ITLTVYIYLILLIFDWMNGVLTLPGIAALVLGVGMAVDANIITYERIKEEIKLGKSVMSA 347

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G   + +TI D+NIT +IA +VLF +G  +V+GFA  + +SIL S  TA+   R ++
Sbjct: 348 FRSGNRGSLATIVDANITTMIAGIVLFIYGTSSVKGFATMLIISILASFITAVYGTRLLL 407

Query: 512 IFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
             ++  + + +                       +      + F++        S L ++
Sbjct: 408 GLLVHSRWLNNKPGYFGVKKSEILNIAETTDHTEVPTKFDRLDFVKHSKKFFIFSGLLTV 467

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I  L T  LN GIDF  G ++ V++++P+++  ++   + L +            N  
Sbjct: 468 IGIIALLTLKLNLGIDFTSGTRIEVMSDKPINVQQLKEEFQKLDLKPEDIVLSGEHNNIG 527

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V              +    K++           N   V P I +EL R  ++ V+IS+I
Sbjct: 528 VARLIGVLSKKEIAELKAHFKQQYGSE------PNVSTVSPVIGKELARNALIAVLISSI 581

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF+ Y AL AI  L+ D    + FF+L  +E +LT +AAVLT+IGYS+ND +
Sbjct: 582 GIIIYVTIRFEIYMALAAIVALLHDAFVIVTFFSLTRLEVDLTFIAAVLTIIGYSINDTI 641

Query: 739 VVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R  +  +   T    + ++++++ +TL RS+ T +    +V+ + ++G   I +
Sbjct: 642 VTFDRIRDLLKKRKVKTVDDLKHIVNRALQQTLTRSINTVLTVIFTVVALLIFGSEAILN 701

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           F I +  G++    SS+FIAA + +     + K  +
Sbjct: 702 FNIALFVGLICGVYSSLFIAAQLWIVWKGNQLKKGK 737



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 51/413 (12%), Positives = 115/413 (27%), Gaps = 23/413 (5%)

Query: 43  RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97
            I LGLDL+GG  ++ EV      D      L+     L   +   G+   +++    N+
Sbjct: 31  NIKLGLDLQGGFEVLYEVKPAKKGDKIDKETLKSTVSALNKRINVLGVSEPNIQIEGKNR 90

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I +  A  + +    + ++   +     ++ +   +      +    +   +N    V  
Sbjct: 91  IRVQLAGIKDQNQAREILSTQAKLTFRDVHDNVLMDG-SDLVQGGAKLSFDENGKPSVAI 149

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS--FH 215
              +                 + +  +       +    ++  +      + A ++  F 
Sbjct: 150 KLKDADKFKQVTEKVYKMGPPNNLLVIWLDFKEGEDSYAKEAGKADPKFISAAAVNQVFA 209

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI----SGIHLNGATANFDPKTHKPVVD 271
           +   +      +   + L D      L  +  EI     G                  V 
Sbjct: 210 QTDVSIVGNFTVKEAQQLADLLNAGALPVELKEIYSTSVGAQFGQNALQKTIFAGIVGVA 269

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
             F  M            I   + + L   +         +P   A + G      A I+
Sbjct: 270 AIFLFMILFYRLPGVIAVITLTVYIYLILLIFDWMNGVLTLPGIAALVLGVGMAVDANII 329

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
                   + +  +++     G      +I       +   +++ ++       +  +  
Sbjct: 330 TYERIKEEIKLGKSVMSAFRSGNRGSLATIVDANITTMIAGIVLFIYGTSSVKGFATMLI 389

Query: 392 FSIFLNVI-------LTLALLSLLGATLTLPSIAGI----VLGIGLAVDSNIL 433
            SI  + I       L L LL         P   G+    +L I    D   +
Sbjct: 390 ISILASFITAVYGTRLLLGLLVHSRWLNNKPGYFGVKKSEILNIAETTDHTEV 442


>gi|229152614|ref|ZP_04280803.1| Protein-export membrane protein SecDF [Bacillus cereus m1550]
 gi|228630875|gb|EEK87515.1| Protein-export membrane protein SecDF [Bacillus cereus m1550]
          Length = 754

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 188/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G++V   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|196039285|ref|ZP_03106591.1| protein-export membrane protein SecDF [Bacillus cereus NVH0597-99]
 gi|196029912|gb|EDX68513.1| protein-export membrane protein SecDF [Bacillus cereus NVH0597-99]
          Length = 754

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 188/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI +FM+V Y   G+VA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFVFMLVFYRLPGIVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQSVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|52081243|ref|YP_080034.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           licheniformis ATCC 14580]
 gi|52786623|ref|YP_092452.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           licheniformis ATCC 14580]
 gi|319644790|ref|ZP_07999023.1| SecDF protein [Bacillus sp. BT1B_CT2]
 gi|52004454|gb|AAU24396.1| protein-export membrane protein SecDF [Bacillus licheniformis ATCC
           14580]
 gi|52349125|gb|AAU41759.1| SecDF [Bacillus licheniformis ATCC 14580]
 gi|317392599|gb|EFV73393.1| SecDF protein [Bacillus sp. BT1B_CT2]
          Length = 741

 Score =  318 bits (813), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 190/702 (27%), Positives = 343/702 (48%), Gaps = 28/702 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V      D++   A+  ++E + +R + +G+SE  IQ  G++RI +QL G  + +R R++
Sbjct: 47  VQPAKQGDKIDRDALISTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVDNQNRAREI 106

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           L T A+++F              G   + +     +  +    I  I L  A    +   
Sbjct: 107 LSTQAQLTFRDTNDKELLN----GADLVENGAKQSFKQDTNEPIVTIKLKDADKFGEVTK 162

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
               V           + +  + +  K  +   D + ++AP ++Q + +    I GNFTI
Sbjct: 163 K---VLDMKPNNQLVIWLDYKKGDSFKKESQKADHKYISAPNVSQVLNTSDVMIEGNFTI 219

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           + A  +A++L AG+LP+KL      +VGA  G  ++     A + G+ +I LFM++ Y  
Sbjct: 220 QEAKDMASILNAGALPVKLVEKYSTSVGAQFGEQALNDTVFAGIIGIAIIFLFMLLYYRL 279

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G +A  ++ + + +TL +   + A LTLP IA ++LG+G+AVD+NI+  ERI+EE +  
Sbjct: 280 PGFIAVITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLG 339

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +SV  +   G  R+++TIFD+NIT ++A +VLF FG  +V+GFA  + LSIL S  TA+ 
Sbjct: 340 KSVRSAFKAGNRRSFATIFDANITTMLAGIVLFIFGTSSVKGFATMLILSILTSFITAVF 399

Query: 506 IVRAMMIFIIRYKKMKSID-------------INPLSRFFLIPDCIAIQFMRARFWGVGI 552
           + R ++  ++  + +                                  F+  R W    
Sbjct: 400 LSRFLLGLLVESRWLDRKKGWFGVRKKDILDIRKTDENTEPPNPFSKWDFVGKRKWFFAF 459

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S +     + +L    LN GIDF  G ++ V ++  +    +  + E + +   S     
Sbjct: 460 SGVLLAAGLIVLLVFKLNLGIDFSSGSRIEVQSDHKLTTQQLEKDFEQVGLDPDSIVLSG 519

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            + +  V       +      V +  K K           N   V P + +EL R  +  
Sbjct: 520 EKNDHGVARFVGVPNQKKIAEVKDYFKDKYGSE------PNVSTVSPTVGKELARNALYA 573

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           VII++I +++Y+ IRF++  A+ AIT+L+ D    +  F+L  +E ++T +AAVLT+IGY
Sbjct: 574 VIIASIGIILYVSIRFEYKMAIAAITSLLYDAFFIIAVFSLTRLEVDVTFIAAVLTIIGY 633

Query: 733 SVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           S+ND +V +DR+R++MK            +++ S+ +T  RS+ T +   I V+ + ++G
Sbjct: 634 SINDTIVTFDRIREHMKKRKPKTFSDLSHIVNLSLQQTFTRSINTVLTVVIVVIALLIFG 693

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + I +F++ +  G++    SS++IAA + L       K  +
Sbjct: 694 AASISNFSVALLVGLLSGVYSSLYIAAQLWLVWKGRELKKPK 735



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 50/421 (11%), Positives = 105/421 (24%), Gaps = 38/421 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +  +  +  IG  + +                    ISLGLDL+GG  ++ EV
Sbjct: 1   MKKGRL-IAFFLTVLLIGTGLGMFTKPAAD------------NISLGLDLQGGFEVLYEV 47

Query: 61  DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
                 D      L    + L       G+   +++ +  N+I +  A    +    + +
Sbjct: 48  QPAKQGDKIDRDALISTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVDNQNRAREIL 107

Query: 116 TLFLQGVNS-----------KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
           +   Q                L  +  K      T + I  +  ++             M
Sbjct: 108 STQAQLTFRDTNDKELLNGADLVENGAKQSFKQDTNEPIVTIKLKDADKFGEVTKKVLDM 167

Query: 165 EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK 224
           +   Q +  +   +    +  S +   +     + S++        + +F      +   
Sbjct: 168 KPNNQLVIWLDYKKGDSFKKESQKADHKYISAPNVSQVLNTSDVMIEGNFTIQEAKDMAS 227

Query: 225 GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
               G   ++  +     V  +     ++                + + +   G      
Sbjct: 228 ILNAGALPVKLVEKYSTSVGAQFGEQALNDTVFAGIIGIAIIFLFMLLYYRLPGFIAVIT 287

Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
           ++               VLT P I   I      +  N            L         
Sbjct: 288 LSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFK 347

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
                                  I   L  IVLF+       G      + +      A+
Sbjct: 348 AGNRRSFA---------TIFDANITTMLAGIVLFIFGTSSVKGFATMLILSILTSFITAV 398

Query: 405 L 405
            
Sbjct: 399 F 399


>gi|320007470|gb|ADW02320.1| protein-export membrane protein SecD [Streptomyces flavogriseus
           ATCC 33331]
          Length = 764

 Score =  318 bits (813), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 201/711 (28%), Positives = 341/711 (47%), Gaps = 31/711 (4%)

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                + +    +   +    + ++++E++RQRID +G++E T+ R G  RI+++LP  Q
Sbjct: 35  QGGTRMVLQAKDSATAKADRESTDRTLEVLRQRIDSLGVAEPTLTRSGEDRIIVELPDVQ 94

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           DP +   ++G TA++ FH V    ++                  L    V++SG  +  A
Sbjct: 95  DPRQAADVIGRTAQLGFHAVQGPGTEGDDTKETLPDEQGG---LLALGPVKLSGAGVKDA 151

Query: 258 TANFD-PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD-------------GRVL 303
           TA FD  +     V + F +   R +  +T D    P                    +V 
Sbjct: 152 TAQFDAQQGTGWSVSLDFHKDAGREWNRLTGDAACHPAGDERRRVAIVLDGKVISSPQVD 211

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
            +      +PSG  QI+G+F+ E A  LA +++ G+LP+ + IVE+R VG  LG+ +I  
Sbjct: 212 PSIACEAGLPSGSTQITGSFSAEEAQDLALLIKGGALPVPVEIVEQRTVGPTLGAAAIDA 271

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
              A + G     LF+IV+Y  +G +A  ++    +++ A L  LG TLTLP +AG VL 
Sbjct: 272 SARAALIGAAATALFIIVMYRLFGALAAAALAAYGVISYAALVALGVTLTLPGLAGFVLA 331

Query: 424 IGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           IG+AVD+N+LV ER REE       S+  +L  GF  A+S + DSN+T LIA  +LFF G
Sbjct: 332 IGMAVDANVLVFERAREEYADRGKGSLRTALTAGFRGAWSAVADSNVTTLIAAALLFFLG 391

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFLIPDC 537
            G V+GF +T+ + +L+SMF+A+ I RA+       + +        I    R     + 
Sbjct: 392 SGPVKGFGVTLAIGVLVSMFSALVIARALTEIAAGSRFVSDYRGVNGIARPGRVRTWLNK 451

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              Q  R+    +  S    + ++  +   G++ G++F GG  +    +RPVD+   R  
Sbjct: 452 REPQLFRSPRRWLLTSTALVLVAVTGILVRGVDLGVEFTGGRLVEYSTSRPVDVETARDA 511

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           + +    D                                ++  + +    +     E++
Sbjct: 512 ISAAGFTDAEVTTAGERD-------ISVRTGEMDNDGEHALRAALADEGGATEKVRDELI 564

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  EL R  ++ + ++    L Y+  RF+W FA+ ++  L+ D+   +G FA  G  
Sbjct: 565 GPSLGDELRRNALIALAVAVFVQLAYLAARFRWTFAVSSVGALVHDVIILVGAFAWLGRP 624

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            +   +AA+LT+IGYSVND VVV+DR+R+ +          D+ ++++ +T+ R+V T M
Sbjct: 625 VDGIFLAALLTVIGYSVNDSVVVFDRVRE-LWTRNRRTPVADVANRAVLQTVPRTVNTGM 683

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            A   ++ +AV GG  +  FA+ +  GI V   SS+  A P  L +     
Sbjct: 684 GALFILVALAVLGGDSLADFALALLIGICVGTYSSVMTAVPGALLLERSSK 734



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 45/156 (28%), Gaps = 11/156 (7%)

Query: 45  SLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITL 100
            LGLDL+GG+ +VL+                  + LR  +   G+   ++ +   ++I +
Sbjct: 29  RLGLDLQGGTRMVLQAKDSATAKADRESTDRTLEVLRQRIDSLGVAEPTLTRSGEDRIIV 88

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
              D +     AD +    Q          +          +    L       +    +
Sbjct: 89  ELPDVQDPRQAADVIGRTAQLGFH----AVQGPGT---EGDDTKETLPDEQGGLLALGPV 141

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196
           + S   ++    Q    + T   +            
Sbjct: 142 KLSGAGVKDATAQFDAQQGTGWSVSLDFHKDAGREW 177


>gi|323490003|ref|ZP_08095224.1| bifunctional preprotein translocase subunit SecD/SecF [Planococcus
           donghaensis MPA1U2]
 gi|323396299|gb|EGA89124.1| bifunctional preprotein translocase subunit SecD/SecF [Planococcus
           donghaensis MPA1U2]
          Length = 758

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 193/702 (27%), Positives = 329/702 (46%), Gaps = 28/702 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V +  +  ++    +  +   +  RI+ +G+SE  IQ  G  RI +QL G +D S  R+L
Sbjct: 48  VTALEDGQEITQDVLTDTTNALMNRINVLGVSEPVIQIEGEDRIRVQLAGIEDQSSAREL 107

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           L T A ++F            + G    +      +       ++        + F   T
Sbjct: 108 LSTEANLTFRDAED----NLLLSGNDLKQGGATGTFDSNGNPIVTLE--LNDPSKFAEIT 161

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +     S + +           +      +  D + ++AP + Q I S   +ISG+FT+
Sbjct: 162 DQVSQTPSPNNVLVIWLDFEEGVDSYAEERLKADPKFVSAPSVKQRISSPSVEISGSFTV 221

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E    LA +L AG+LP+ L  +   +VGA  G  ++ +   A   G+ L++LFM+V Y  
Sbjct: 222 EETQNLAGILNAGALPVSLEEIYSTSVGAQFGEQALDQTMVAAAVGIALVLLFMLVYYRL 281

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G+VA  ++   V L L +   +G  LTLP IA I+LG+G+AVD+NI+  ERIREE R  
Sbjct: 282 PGMVAVVTLSAYVYLILLVFEWIGGVLTLPGIAAIMLGVGMAVDANIITYERIREEMRTG 341

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  S  +G   ++S I D+N+T L+A  VLF++G  +V+GFA  + +SIL+S  TA+ 
Sbjct: 342 KSIKESFQVGARSSFSAIIDANVTTLLAAAVLFYYGTSSVKGFATLLIISILVSFLTAVW 401

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGI 552
             R ++   +    + +       +  +I                    F R R      
Sbjct: 402 GSRLLLGLWVNSGVLDNKPGMFGLKKSVIHSQQENLEITDLSTRFDRFDFARNRNKFFLA 461

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI+  +  + +L    LN GIDF  G ++ + +   +    V++ L+             
Sbjct: 462 SIVLIVSGMAVLGVFRLNLGIDFSSGTRVEIASEAALTKEEVQTFLDGAGFETDDIVISG 521

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            E N  V    +         +  +       I       N   V P + +EL +  +  
Sbjct: 522 DESNIGVARFAEEFSQEEINNLKAVT------IDEFGAEPNVSTVSPTVGQELAKNALYA 575

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+AI ++IY+  RF+W   + +I  LI D    +  F+L  +E ++T +AAVLT+IGY
Sbjct: 576 LSIAAIGIIIYVAFRFEWRMGVASIVALIHDAFFIVAAFSLLRLEVDITFIAAVLTIIGY 635

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           S+ND +V +DR+R+NMK      +      +++ S+ +TLGRSV T +   + V+ + ++
Sbjct: 636 SINDTIVTFDRIRENMKRMKKIDTVEQLEKVVNVSLRQTLGRSVNTVLTVLLVVIALLIF 695

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           G   I +F+I +  G++    SSIFIAA + L +        
Sbjct: 696 GAPSITNFSIALLIGLIAGTYSSIFIAAQLWLILKKGELNKK 737



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/413 (10%), Positives = 112/413 (27%), Gaps = 20/413 (4%)

Query: 1   MR-NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+     +     ++  IG++ +         +           I LGLDL+GG  ++ E
Sbjct: 1   MKARGRIIAFFLLVVVLIGVIGS-----TSLPIA--------KDIKLGLDLQGGFEVLYE 47

Query: 60  V----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADK 114
           V    D  +     L   ++ L + +   G+    ++    ++I +  A    + +  + 
Sbjct: 48  VTALEDGQEITQDVLTDTTNALMNRINVLGVSEPVIQIEGEDRIRVQLAGIEDQSSAREL 107

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           ++            +   +      +   +     N    V     + S           
Sbjct: 108 LSTEANLTFRDAEDNLLLSG-NDLKQGGATGTFDSNGNPIVTLELNDPSKFAEITDQVSQ 166

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             S + +  +            ++  +      +   +      P+    G         
Sbjct: 167 TPSPNNVLVIWLDFEEGVDSYAEERLKADPKFVSAPSVKQRISSPSVEISGSFTVEETQN 226

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +                  +      +    + +V  +        F  V     G   
Sbjct: 227 LAGILNAGALPVSLEEIYSTSVGAQFGEQALDQTMVAAAVGIALVLLFMLVYYRLPGMVA 286

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            V L   V    ++ + I            +   G+           I+  +   +++  
Sbjct: 287 VVTLSAYVYLILLVFEWIGGVLTLPGIAAIMLGVGMAVDANIITYERIREEMRTGKSIKE 346

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                +    +  I A +  ++   ++ Y     V  F+  L + + ++ L+ 
Sbjct: 347 SFQVGARSSFSAIIDANVTTLLAAAVLFYYGTSSVKGFATLLIISILVSFLTA 399


>gi|229032061|ref|ZP_04188043.1| Protein-export membrane protein SecDF [Bacillus cereus AH1271]
 gi|228729253|gb|EEL80248.1| Protein-export membrane protein SecDF [Bacillus cereus AH1271]
          Length = 754

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 188/690 (27%), Positives = 327/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   G+VA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGIVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFVTNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPAYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLVFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + + +S V  + + L+I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQALTVSDVHKDFKELKIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVIFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|229019634|ref|ZP_04176445.1| Protein-export membrane protein SecDF [Bacillus cereus AH1273]
 gi|229025873|ref|ZP_04182269.1| Protein-export membrane protein SecDF [Bacillus cereus AH1272]
 gi|228735425|gb|EEL86024.1| Protein-export membrane protein SecDF [Bacillus cereus AH1272]
 gi|228741658|gb|EEL91847.1| Protein-export membrane protein SecDF [Bacillus cereus AH1273]
          Length = 754

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 190/690 (27%), Positives = 332/690 (48%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++  +A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRNALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSADKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKEL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ +I LFM+V Y   G+VA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGIVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 VMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFVTNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  S++  I  
Sbjct: 410 SLLVKSRYFDKKPSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSMVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + + +S V  +L+ L+I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQALTVSDVHKDLKELKIDVKEEDIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G              +        T  N   V P I +E+ R   + V+I+++ +
Sbjct: 530 AVRTLGVLSKDEIAKAKTFFQ----DKYGTEPNVSTVSPTIGKEIARNAFIAVLIASVVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F+LF IE +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSLFQIEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++    ++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRNALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|228954695|ref|ZP_04116718.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805022|gb|EEM51618.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 754

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 189/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L V +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYVFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNISTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G++V   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|229048120|ref|ZP_04193691.1| Protein-export membrane protein SecDF [Bacillus cereus AH676]
 gi|229111883|ref|ZP_04241429.1| Protein-export membrane protein SecDF [Bacillus cereus Rock1-15]
 gi|229146982|ref|ZP_04275344.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST24]
 gi|296504903|ref|YP_003666603.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           thuringiensis BMB171]
 gi|228636479|gb|EEK92947.1| Protein-export membrane protein SecDF [Bacillus cereus BDRD-ST24]
 gi|228671639|gb|EEL26937.1| Protein-export membrane protein SecDF [Bacillus cereus Rock1-15]
 gi|228723223|gb|EEL74597.1| Protein-export membrane protein SecDF [Bacillus cereus AH676]
 gi|296325955|gb|ADH08883.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           thuringiensis BMB171]
          Length = 754

 Score =  317 bits (812), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 188/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G++V   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|228960684|ref|ZP_04122328.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798990|gb|EEM45963.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 754

 Score =  317 bits (812), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 189/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 SLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G++V   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|228941579|ref|ZP_04104127.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228974508|ref|ZP_04135075.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228981102|ref|ZP_04141403.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           Bt407]
 gi|229071919|ref|ZP_04205130.1| Protein-export membrane protein SecDF [Bacillus cereus F65185]
 gi|229081675|ref|ZP_04214170.1| Protein-export membrane protein SecDF [Bacillus cereus Rock4-2]
 gi|229180687|ref|ZP_04308027.1| Protein-export membrane protein SecDF [Bacillus cereus 172560W]
 gi|228602832|gb|EEK60313.1| Protein-export membrane protein SecDF [Bacillus cereus 172560W]
 gi|228701679|gb|EEL54170.1| Protein-export membrane protein SecDF [Bacillus cereus Rock4-2]
 gi|228711215|gb|EEL63179.1| Protein-export membrane protein SecDF [Bacillus cereus F65185]
 gi|228778643|gb|EEM26909.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           Bt407]
 gi|228785225|gb|EEM33237.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818086|gb|EEM64163.1| Protein-export membrane protein SecDF [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|326942192|gb|AEA18088.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 754

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 188/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNISTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMVVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G++V   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|229098885|ref|ZP_04229821.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-29]
 gi|229117910|ref|ZP_04247272.1| Protein-export membrane protein SecDF [Bacillus cereus Rock1-3]
 gi|228665567|gb|EEL21047.1| Protein-export membrane protein SecDF [Bacillus cereus Rock1-3]
 gi|228684558|gb|EEL38500.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-29]
          Length = 754

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 189/690 (27%), Positives = 329/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G +RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +       A      K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFRAVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKEL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ +I LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT + A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+         SI+  I  
Sbjct: 410 SLLVKSRYFDKKPSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + + V ++ V  + + L+I            +    
Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQAVTVADVHKDFKELKIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF+  +A+ A+  L+ D    +  F+LF IE +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 VLYVSIRFRLTYAVSAVIALLHDAFVMIVVFSLFRIEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDLKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++ +  G+VV   SSIF+A+ I L + + R
Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRR 735



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEVLYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++    N+I +  A  + ++   + ++   
Sbjct: 54  KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|313680241|ref|YP_004057980.1| protein translocase subunit secf;protein translocase subunit secd
           [Oceanithermus profundus DSM 14977]
 gi|313152956|gb|ADR36807.1| protein translocase subunit secF;protein translocase subunit secD
           [Oceanithermus profundus DSM 14977]
          Length = 719

 Score =  317 bits (811), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 209/692 (30%), Positives = 352/692 (50%), Gaps = 26/692 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLR 203
           V+ Q +        +E++  +I  RI+ +G++E  IQ    +RI+++LPG       +  
Sbjct: 45  VVLQTDNPNPDPDDLEKARLVIENRINGLGVAEPLIQIAQPNRIVVELPGLSPEEQDKAL 104

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           +L+G  A + F  V  +   K           +          VE+ G  L  A   F  
Sbjct: 105 KLIGQQAVLEFRIVKQDAQGKA----------TSELTLDDLGPVELKGSDLVDARVQF-D 153

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
           + ++P V + F   GA++F ++TR+NIG+ LA+VLDG + +AP I  AI  G+A I+G  
Sbjct: 154 RFNRPEVALEFTPEGAKKFADLTRNNIGRRLAIVLDGTIYSAPNIQTAITDGRAVITGIN 213

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            ++ A  +A +LR+GSLP+ L++ E R +G  LG D+I  G  A V G +LI + + + Y
Sbjct: 214 DLDEATQIALVLRSGSLPVPLHVEEVRAIGPTLGKDAIRAGIVASVVGALLIFVLLYLYY 273

Query: 384 -GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
              +G VA   +    +L + +LS LGA LTLP IAG +L +G AVD N+L  ERI+EE 
Sbjct: 274 GFWFGSVAAIGLLYIALLIMGVLSGLGAVLTLPGIAGFILTLGAAVDGNVLSFERIKEEL 333

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           +  + +  ++  GF  +  TI D+NI+ L+A   L+ +  G VRGFA+ + + I++++F+
Sbjct: 334 KLGKKLRQAIPDGFVHSTVTILDANISTLLAAAALYQYSTGPVRGFAVMLAIGIVVAVFS 393

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
            +   R M+           I                I F++        ++ F+     
Sbjct: 394 NLVFSRWMLE---------RIAAAREVIPPYWIWGTKIPFLKEARIFTPATLTFAALMGA 444

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           ++F +G N+GIDF GG    V     V +  +RS L+ +QI  +S +     +       
Sbjct: 445 VVFFNGFNFGIDFTGGTAYLVRTGPEVTVDRIRSFLDEVQIQGVSAKEAIITEVESPLAD 504

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAM 680
           Y+           + V             +   +E+VGP +  EL R  ++ V++    +
Sbjct: 505 YKEFSVRVGLLSNDGVIALRKAFEEKLNAEVLQSEVVGPAVGAELRRNTVLAVLVGLGLI 564

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           LIY+  RF W F + ++  +  D+  T G F+L G+EF +  VAA+LT+IGYS+ND ++V
Sbjct: 565 LIYMAFRFDWIFGVASVIAVGHDVAITAGAFSLMGLEFTIPIVAALLTIIGYSINDSIIV 624

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
            DR+R+N +     I + +L+D SIN+TL R+V TS    + +  +   GG V+  F+I 
Sbjct: 625 SDRIREN-QKVVRGIPYNELVDLSINQTLSRTVMTSFTTMLPLFALLFIGGPVLRDFSIA 683

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  GI+V   SSI++   ++ +    +    +
Sbjct: 684 LLIGILVGTFSSIYVVGSLVTWWKMRQPAPRK 715



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 47/144 (32%), Gaps = 15/144 (10%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNR-ISLGLDLRGGSHLVLEVDEDDF 65
              +   +  +  + A+           +    P    I+LGLDL+GG  +VL+ D  + 
Sbjct: 6   TTAILLFVLFVAAIAAM-----------WKPWAPNEPMINLGLDLKGGLRVVLQTDNPNP 54

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFAD--SRFKENIADKVTLFLQGV 122
               L+     + + +   G+    ++    N+I +         ++     +       
Sbjct: 55  DPDDLEKARLVIENRINGLGVAEPLIQIAQPNRIVVELPGLSPEEQDKALKLIGQQAVLE 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIV 146
              +  D +       T  ++  V
Sbjct: 115 FRIVKQDAQGKATSELTLDDLGPV 138


>gi|218235940|ref|YP_002369220.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           cereus B4264]
 gi|218163897|gb|ACK63889.1| protein-export membrane protein SecDF [Bacillus cereus B4264]
          Length = 754

 Score =  317 bits (811), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 189/690 (27%), Positives = 326/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SFALLVGLVVGTYSSVFVASQIWLMLENRR 735



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|295399345|ref|ZP_06809327.1| protein-export membrane protein SecD [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110095|ref|YP_003988411.1| protein-export membrane protein SecD [Geobacillus sp. Y4.1MC1]
 gi|294978811|gb|EFG54407.1| protein-export membrane protein SecD [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215196|gb|ADP73800.1| protein-export membrane protein SecD [Geobacillus sp. Y4.1MC1]
          Length = 750

 Score =  317 bits (810), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 190/696 (27%), Positives = 345/696 (49%), Gaps = 27/696 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++ +  ++ ++  + +RI+ +G+SE  IQ  G +RI +QL G +D ++ R++L T AK
Sbjct: 54  GDKIDNDTLKSTVSALNRRINVLGVSEPNIQIEGKNRIRVQLAGIKDQNQAREILATQAK 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  +    G        + +          +++              K   P   
Sbjct: 114 LTFRDVNDHVLMDGSDLVQGGAKLTFDENGKPSVAIKLKDADKFKEVTEKVYKMGPPNNL 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +               ++  K  A   D + ++A  +NQ        I GNFT++ A  L
Sbjct: 174 LVIW------LDFKEGEDSYKKEAGKADPKFISAAAVNQVFNQTDVSIVGNFTVKEAQQL 227

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AG+LP++L  +   ++GA  G +++ K   A + G+  I LFMI+ Y   G++A 
Sbjct: 228 ADLLNAGALPVELKEIYSTSIGAQFGQNALQKTVFAGIVGVAAIFLFMILFYRLPGVIAV 287

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + + LTL +   +   LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +S+  +
Sbjct: 288 ITLTVYIYLTLLIFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEEIKLGKSIMSA 347

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G   +++TIFD+NIT +IA VVLF +G  +V+GFA T+ +SIL+S  TA+   R ++
Sbjct: 348 FRSGNKGSFATIFDANITTIIAGVVLFIYGTSSVKGFATTLIISILMSFITAVYGTRLLL 407

Query: 512 IFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
             ++  + + +                       +      + F++        S L ++
Sbjct: 408 GLLVNSRILNNKPGYFGVKKSEILNIAEITDHTEVPTKFDRLDFVKHSKKFFIFSGLLTV 467

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I  L T  LN GIDF  G ++ V++++P+++  +    + L +            N  
Sbjct: 468 VGIIALLTMKLNLGIDFASGTRVEVMSDKPINVQQLEGEFQKLGLKPKDIVLSGDHNNVG 527

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V              +    K++           N   V P + +EL R  ++ V+IS+I
Sbjct: 528 VARFIGVLSKKEIAELKMHFKQQYGSE------PNVSTVSPVVGKELARNALIAVLISSI 581

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+ Y AL AI  L+ D    + FF+L  +E +LT +AAVLT+IGYS+ND +
Sbjct: 582 GIIIYVTVRFEMYMALAAIVALLHDAFFIVTFFSLTRLEVDLTFIAAVLTIIGYSINDTI 641

Query: 739 VVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R  M  +   T    + ++++++ +TL RS+ T +    +V+ + ++G   I +
Sbjct: 642 VTFDRVRDLMKKRKVKTVDDLKHIVNRALQQTLTRSINTVLTVLFTVVALLIFGSKAIFN 701

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           F + +  G+V    SS+FIAA + +     + K  +
Sbjct: 702 FNVALFVGLVCGVYSSLFIAAQLWVVWKGNQLKKGK 737



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 5/91 (5%)

Query: 43  RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97
            I LGLDL+GG  ++ EV      D   N  L+     L   +   G+   +++    N+
Sbjct: 31  NIKLGLDLQGGFEVLYEVKPAKKGDKIDNDTLKSTVSALNRRINVLGVSEPNIQIEGKNR 90

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
           I +  A  + +    + +    +     +N 
Sbjct: 91  IRVQLAGIKDQNQAREILATQAKLTFRDVND 121


>gi|294055366|ref|YP_003549024.1| protein-export membrane protein SecD [Coraliomargarita akajimensis
           DSM 45221]
 gi|293614699|gb|ADE54854.1| protein-export membrane protein SecD [Coraliomargarita akajimensis
           DSM 45221]
          Length = 854

 Score =  317 bits (810), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 189/798 (23%), Positives = 348/798 (43%), Gaps = 86/798 (10%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
           ++++ LGLDL+GG  + ++VD +    G                                
Sbjct: 117 QSQLRLGLDLKGGVGVTMKVD-EAATEGMS------------------------------ 145

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
            F  +   ++    +   L G          + ++    +  I I +   +  +      
Sbjct: 146 QFQQAEQLKDAIRIMGDRLDG------SGVAEPIIRPKGDTAIEIQMPGLSTKENP---- 195

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
           E    I +    +      +     + +     P E +   +      T +++  ++   
Sbjct: 196 EIIDVIKKPARLEFRSVHPSKTPYNTAKEDYPSPYEYEVLVMENEDRKTGQVAETEM--- 252

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                                 ++   E +G  +  A A  +       + +   + G+ 
Sbjct: 253 ---------------------FIKRIPEATGEIVKDAYAYPNQAG-GFEIHLEMTDEGSD 290

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
               VT   +GKPLA+VLDG++ +AP +N    S  AQI+G+F+   A  LA +L    L
Sbjct: 291 VLRSVTERMVGKPLAIVLDGKLYSAPTVNSV-LSKNAQITGSFSQREAIDLANVLN-NPL 348

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
            + L + E   VG  +  D+      A+  G  L+VLFM+  Y   GLVA  S  +NV++
Sbjct: 349 ALPLAVDEMYEVGPSMAEDARDSSINAVKVGATLVVLFMVAYYFIGGLVAVISALINVVI 408

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
            L +L+ LGATLTLP +A +VL +G+ VD+NIL+ ER+REE +  +++  +    F +  
Sbjct: 409 VLGVLASLGATLTLPGVAALVLTLGMGVDANILIFERLREELKAGKTIKNAAAGAFQKVT 468

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           STI D+N+T LI   +L + G G V+GF  T+ + I  S+F A+ + R M+ F++    M
Sbjct: 469 STIVDANVTTLITACILIWLGTGPVKGFGYTLAIGICASIFCALIVTRFMIDFLVYRLNM 528

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGI 579
             +                I F + R      S L     +  +  H  N  GIDF GG 
Sbjct: 529 SKV------LGLNFGGNFNIDFFKFRKPAFIASWLLVAAGVVSVVIHHDNIMGIDFTGGD 582

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           ++ +  +  +  S +    E L++G+++        +    L+ Q     ++  +   V 
Sbjct: 583 EMTIAFDERIAASELNVAAEELELGEVNPVYQTLIGSGEEVLKIQTRFDQSRDVL---VG 639

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +               +G  +S ++    +  V+ +   +L+Y+  RF+  + +GA+  
Sbjct: 640 LQAAFPSANLQEVGMNQIGASVSNDIQWNALWSVVAALGGILLYVAFRFEVGYGVGAVVA 699

Query: 700 LILDITKTLGFFALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            I D+  T+G F L G        +F+   +AA+L ++GYS+ND +VV+DR+R+ ++L  
Sbjct: 700 TIHDVLMTVGVFVLCGELGIFVSGQFSAPMLAAILMIVGYSINDTIVVFDRIREELELNP 759

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                R +I+ +I+    RS+ TS+   ++ + + ++G  VI  F+     GI+    SS
Sbjct: 760 -GAGLRHIINMAISRVFSRSLLTSITTLLAAVSLYIFGAGVINDFSFVFIIGILTGTFSS 818

Query: 813 IFIAAPILLFIYDWRAKN 830
           IFIA+P+  + +    ++
Sbjct: 819 IFIASPVFYWWHKGDRRH 836


>gi|320449991|ref|YP_004202087.1| bifunctional preprotein translocase subunit SecD/SecF [Thermus
           scotoductus SA-01]
 gi|320150160|gb|ADW21538.1| bifunctional preprotein translocase, subunit SecD/SecF [Thermus
           scotoductus SA-01]
          Length = 735

 Score =  316 bits (809), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 212/700 (30%), Positives = 365/700 (52%), Gaps = 25/700 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLR 203
           ++ +  ++      +E++  I+  RI+ +G++E  IQ  G  RI+++LP   + D  R  
Sbjct: 45  IVLEAAVENPTPDDLEKARTILENRINALGVAEPLIQIQGQRRIVVELPGLSQADQDRAL 104

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG----------NQYLVEDKVEISGIH 253
           +L+G  A + F  +    +        + LR++             +        ++G  
Sbjct: 105 KLIGQRAVLEFRILKEGATGTTVAQINQALRENPRLKREDLEKDLIKPEDLGPPLLTGAD 164

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
           L  A A FD    +P V ++F   GA++F EVTR N+GK LA+VLDG+V TAPVI QAI 
Sbjct: 165 LADARAVFDQFG-RPQVALTFTPEGAKKFEEVTRANVGKRLAIVLDGKVYTAPVIRQAIT 223

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
            G+A I G  ++E A  +A +LR+G+LP+ L + E R +G  LG D+I  G  + + G +
Sbjct: 224 GGQAVIEGLSSLEEASEIALVLRSGALPVPLEVAEIRAIGPTLGQDAIQAGIRSALIGTL 283

Query: 374 LIVLFMIVLYGKW-GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
            I L +   YG   GLVA   +    +L L LLS LGATLTLP IAG+VL +G AVD N+
Sbjct: 284 AIFLLIFAYYGPSLGLVASLGLIYTSVLILGLLSGLGATLTLPGIAGLVLTLGAAVDGNV 343

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L  ERI+EE    +    ++  GF  +  TI D N   L+A   L+ +  G VRGFA+ +
Sbjct: 344 LSFERIKEELAAGKKFRQAIPEGFKHSTLTILDVNAAHLLAAAALYQYATGPVRGFAVIL 403

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
            + ++ S+F+ +   R ++  +    ++K           +        FM    +    
Sbjct: 404 AIGVVASVFSNLVFSRYLLERLADRGEIK---------PPMWLVNPRFNFMGPARFITLA 454

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           ++L ++ +  ++FT G NY IDF GG    +     V +  +R  LE+            
Sbjct: 455 TLLLAVLAAGVVFTKGFNYSIDFTGGTAYTLRTGPEVGVDTLRRFLETKGFPAKEAVITQ 514

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            +       ++              +++ +   +  + + + E VGP I  EL R  ++ 
Sbjct: 515 VQAPTADYREFSVKLPPLPDAKRLELERLLGAELKATVLTS-ETVGPAIGSELRRNAVMA 573

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V++    +L+Y+  RF W F + ++  +  D+    G ++L G+EF++  +AA+LT++GY
Sbjct: 574 VLVGLGLILLYVAFRFDWTFGVASVLAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGY 633

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           S+ND +VV DR+R+N KL    + +R+++++SIN+TL R+V TS+   + ++ +   GGS
Sbjct: 634 SINDSIVVSDRIRENQKLL-RGVPYREMVNRSINQTLSRTVMTSLTTLLPIIALLFLGGS 692

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           V+  F++ +  GI V   SSI++ + +++F  + R + A+
Sbjct: 693 VLRDFSLAIFVGIFVGTYSSIYVVSAMVVFWKELRQRQAK 732



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 35/111 (31%), Gaps = 4/111 (3%)

Query: 35  FPSAMPKNR-ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
           +    P    + LGLDL+GG  +VLE   ++     L+     L + +   G+    ++ 
Sbjct: 23  WKPWAPAEPKVKLGLDLKGGLRIVLEAAVENPTPDDLEKARTILENRINALGVAEPLIQI 82

Query: 94  IQN-KITLSFAD--SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
               +I +         ++     +          L        +    + 
Sbjct: 83  QGQRRIVVELPGLSQADQDRALKLIGQRAVLEFRILKEGATGTTVAQINQA 133


>gi|229076042|ref|ZP_04209013.1| Protein-export membrane protein SecDF [Bacillus cereus Rock4-18]
 gi|228707076|gb|EEL59278.1| Protein-export membrane protein SecDF [Bacillus cereus Rock4-18]
          Length = 754

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 189/690 (27%), Positives = 329/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G +RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +       A      K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFRAVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKEL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ +I LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT + A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+         SI+  I  
Sbjct: 410 GLLVKSRYFDKKQSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + + V ++ V  + + L+I            +    
Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQAVTVADVHKDFKELKIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF+  +A+ A+  L+ D    +  F+LF IE +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 VLYVSIRFRLTYAVSAVIALLHDAFVMIVVFSLFRIEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDLKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++ +  G+VV   SSIF+A+ I L + + R
Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRR 735



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEVLYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++    N+I +  A  + ++   + ++   
Sbjct: 54  KGDKIDREALVSTVGALENRVNVLGVSEPNIQIEGENRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|255994170|ref|ZP_05427305.1| protein-export membrane protein SecDF [Eubacterium saphenum ATCC
           49989]
 gi|255993838|gb|EEU03927.1| protein-export membrane protein SecDF [Eubacterium saphenum ATCC
           49989]
          Length = 758

 Score =  316 bits (808), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 196/709 (27%), Positives = 326/709 (45%), Gaps = 18/709 (2%)

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIGIS 177
             GV     +  K NL +        ++ +Q +         ++Q+  +I +R++ +G+S
Sbjct: 25  FNGVGGSKPLKDKVNLGLDIKGGAYVLMEAQTDKKGAELKKLMDQTQAVIEKRVNALGLS 84

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E TI   G  R+ I++PG ++     + +G TA++ F     +    G            
Sbjct: 85  EPTITIEGEKRLRIEMPGAENTDDAIKKIGKTAQLKFLLADESEVLTGKDVKNASTEVDQ 144

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N           G +L                         +      + ++       
Sbjct: 145 NN-----------GGYLVNLEFTDKGAKLFEEGTKEAISKAHKPKDSNLQSDVIIIKLDD 193

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +            G F    A  L+A++R G+LP+ +  V      A +G
Sbjct: 194 KVISSPQVQGVISGGTCQITSGKGGFRKSEATELSALIRGGALPVAMKEVSSSQQDATIG 253

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            ++  K   A + G++LI + M++LY   GLVA+ ++   +++ +A+++L+G+TLTLP I
Sbjct: 254 YNAFEKSVKAGIIGVILIFILMVLLYRVMGLVANLALLAYIVILVAVMALMGSTLTLPGI 313

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGIVL IG+AVD+N+++  RIREE     ++  S + GF  + STI DS IT  IA VVL
Sbjct: 314 AGIVLSIGMAVDANVIIFTRIREELSAGGAIRPSCENGFKNSMSTIIDSQITTFIAAVVL 373

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFFLIP 535
           +  G   V+GFA T+ + I  S+ TA+ + R  M  +        K              
Sbjct: 374 YQLGTSLVKGFAWTLMIGIAASILTAVILTRLFMTVLSHSNIFADKKFFGVKKDNKISFE 433

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM+ R     ISI+  +    +    G NYGIDF GG  + V  ++ VD   ++
Sbjct: 434 LNTNINFMKIRKIAYIISIVVFLIGGGIFIARGYNYGIDFTGGTMMHVDMHKVVDQDKLK 493

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S L+   +       + G+ N  V ++ +     A    L     K  +I     I+   
Sbjct: 494 SFLKKNDVAG--EVIYAGKANKEVIVRTRKHLDRASREKLLEAMHKEYKIDKKKDIKEFN 551

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
             GP I + L +  I  + I+A+ ML+YI IRF+ W F   A+  +I D+   L F+++F
Sbjct: 552 DFGPSIGKLLRQNAIKALAIAAVLMLVYIRIRFRKWRFGGAALIGVIHDVLIMLAFYSIF 611

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             E +   +AA+LT+ GYS+ND +V++DR+R+N   Y    +  D+I+KSIN TL RS+ 
Sbjct: 612 YYEISNPFIAAILTVFGYSINDTIVIFDRIREN-NKYLKKGAVADVINKSINSTLSRSIV 670

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           TS+   I ++P+ ++   VI SF IP+  G+     SS+FI   +    
Sbjct: 671 TSLTTMIVMVPLLIFTSDVIRSFTIPLMIGVATGTYSSVFICGSLYYDF 719



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 12/85 (14%), Positives = 37/85 (43%), Gaps = 4/85 (4%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN- 96
           K++++LGLD++GG+++++E   D     +   +      +   +   G+   ++      
Sbjct: 35  KDKVNLGLDIKGGAYVLMEAQTDKKGAELKKLMDQTQAVIEKRVNALGLSEPTITIEGEK 94

Query: 97  KITLSFADSRFKENIADKVTLFLQG 121
           ++ +    +   ++   K+    Q 
Sbjct: 95  RLRIEMPGAENTDDAIKKIGKTAQL 119


>gi|229013628|ref|ZP_04170759.1| Protein-export membrane protein SecDF [Bacillus mycoides DSM 2048]
 gi|228747687|gb|EEL97559.1| Protein-export membrane protein SecDF [Bacillus mycoides DSM 2048]
          Length = 754

 Score =  315 bits (807), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 191/690 (27%), Positives = 330/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAKEL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ +I LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT + A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560
             +++ +   K +    +    +IP              I F+         SI+  I  
Sbjct: 410 GLLVKSRYFDKKLSYFGVKEKDIIPLTKGVVHPPTRFDRINFVNIGHKFFLFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + +   +S V  +L+ L I            +    
Sbjct: 470 AIILPIFKMNLGIDFASGTRIDLQSKQATTVSNVHKDLKELNIDVKEEDIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTVGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF+  +A+ A+  L+ D    +  F+LF IE +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 VLYVSIRFRLTYAVSAVIALLHDAFVMIVVFSLFQIEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNSSIRQTIGRSINTVLTVLFPVITLLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++ +  G+VV   SSIF+A+ I L + + R
Sbjct: 706 SLALLIGLVVGTYSSIFVASQIWLMLENRR 735



 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 90/259 (34%), Gaps = 4/259 (1%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                 L V+     +         +             +      +    G+   ++  
Sbjct: 168 MPPPTNLMVIWLDFEEGKDSYKAESAKPNPKFLSAATVSQVFNQAEVSIVGGNFTVESAK 227

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
                     +        +  VG K  ++ + + I    I    + +++ + ++    L
Sbjct: 228 ELSSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLP-GL 286

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A+  L L I  TL  F        L  +AA++  +G +V+  ++ Y+R+++ +K+    
Sbjct: 287 VAVIMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKI---G 343

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S         + +L   +  ++    +   +  +G S +  FA  +   I+V   +++F
Sbjct: 344 KSMMSAFRAGNHRSLATILDANITTIAAAGVLFAYGNSSVKGFATSLIVSILVGFITNVF 403

Query: 815 IAAPILLFIYDWRAKNARI 833
               +L  +   R  + ++
Sbjct: 404 GTRFLLGLLVKSRYFDKKL 422



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 46/130 (35%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++    ++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDALVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|225175545|ref|ZP_03729539.1| protein-export membrane protein SecD [Dethiobacter alkaliphilus AHT
           1]
 gi|225168874|gb|EEG77674.1| protein-export membrane protein SecD [Dethiobacter alkaliphilus AHT
           1]
          Length = 710

 Score =  315 bits (806), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 207/670 (30%), Positives = 358/670 (53%), Gaps = 32/670 (4%)

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
             I++++ +IR RID +G++E  IQR G  RI ++L G +D    R+++G TA ++F   
Sbjct: 59  DRIDRAISVIRNRIDGLGVAEPVIQREGDDRIRVELAGIEDQQAAREVIGRTAMLTF--- 115

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                                     + +  ++G  L  A   FD +  +P V + F   
Sbjct: 116 -----------------------VGPDGETILTGGDLRNAGVTFDERN-RPAVSLEFSPE 151

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
           G R+F E T   +G+ + + LD  V++ P +   I  G A I+    +E A  LA MLR+
Sbjct: 152 GTRKFAEATEKYLGQIIYIQLDDEVISNPEVRTIITDGNAIITNQENVEEASNLALMLRS 211

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           G+LP++L  +E R VG  LG DS+ +   A VAGL+L+++FM+V Y  +G++A  S+   
Sbjct: 212 GALPVELVELETRAVGPTLGQDSLNRSVQAGVAGLILVLVFMLVYYRVFGIIASVSLITY 271

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           + L  +LL+ + AT+TL  IAG++L +G+AVD+N+++ ERI+EE +  +++  S++ GF 
Sbjct: 272 LALVFSLLTAINATMTLFGIAGLILSVGMAVDANVIIFERIKEEIKTGRTMRTSIEAGFD 331

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
            A+S I D+N+T LIA  +LF+F  G VRGFA+T+ + IL SM TAI + R ++    + 
Sbjct: 332 HAFSAILDANVTTLIAAAILFYFATGPVRGFAVTLSIGILASMVTAIFLTRYLLRSFNKA 391

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
           + +++      +          + F+  R     +S +  I  I  + T G+N+GIDF G
Sbjct: 392 EILRT--PQNDAAKDAGVLAGGVNFVGMRKIAFILSAVLIIVGIASMGTAGMNFGIDFTG 449

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK--NFLVRLQYQPGDSVAQTRVL 635
           G  + +   +   L   R  LE L +   + Q            +        +      
Sbjct: 450 GTNIHLNIGQDFTLEEAREVLEPLGLEGATLQQVGATGLGEGQAQELLIKAHELTPEEQD 509

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            ++     +    +   + E VG  +  EL R+ ++ +++++IAM+ YI +RF++ FAL 
Sbjct: 510 AVLAAFQEQYNITTDDYSVESVGAVVGGELTRQALIALLLASIAMIAYITLRFEYRFALS 569

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           AI  L+ D    L FF++F +E N   +AA+L ++GYS+ND +V++DR+R+N+       
Sbjct: 570 AIVALLHDALIVLAFFSVFRVEVNGPFIAAILFILGYSINDTIVIFDRVRENL-KNRHKD 628

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
              ++++ SI  +L RS+ TS+   + +L M ++GG  + +F   +  G+     SSIFI
Sbjct: 629 KLTEVVNMSIRSSLRRSIITSLTTLLVLLTMYIFGGVTLQAFISALLVGVFAGTYSSIFI 688

Query: 816 AAPILLFIYD 825
           A+P+ L   +
Sbjct: 689 ASPVWLSWKE 698



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 53/454 (11%), Positives = 122/454 (26%), Gaps = 28/454 (6%)

Query: 42  NRISLGLDLRGGSHLVLEV----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQN 96
           N ++LGLDLRGG +++ +     D        +      +R+ +   G+    +++   +
Sbjct: 29  NNMNLGLDLRGGVYVLYQAVEADDTGAVGTDRIDRAISVIRNRIDGLGVAEPVIQREGDD 88

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    ++   + +                 +     T  ++       +     
Sbjct: 89  RIRVELAGIEDQQAAREVIGRTAMLTF------VGPDGETILTGGDLRNAGVTFDERNRP 142

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
           + ++E S E  R+  +                  I      D       + T        
Sbjct: 143 AVSLEFSPEGTRKFAEATEKYLG----------QIIYIQLDDEVISNPEVRTIITDGNAI 192

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
           +    + +        LR       LVE +    G  L   + N   +     + +    
Sbjct: 193 ITNQENVEEASNLALMLRSGALPVELVELETRAVGPTLGQDSLNRSVQAGVAGLILVLVF 252

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
           M           ++     + L   +LTA      +      I        A ++     
Sbjct: 253 MLVYYRVFGIIASVSLITYLALVFSLLTAINATMTLFGIAGLILSVGMAVDANVIIFERI 312

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
              +     +      G D    +I       +    +      + Y   G V  F++ L
Sbjct: 313 KEEIKTGRTMRTSIEAGFDHAFSAILDANVTTLIAAAI------LFYFATGPVRGFAVTL 366

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           ++ +  ++++ +  T  L         +    +        +            +  +  
Sbjct: 367 SIGILASMVTAIFLTRYLLRSFNKAEILRTPQNDAAKDAGVLAGGVNFVGMRKIAFILSA 426

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
                 I  S  TA +   + F  G         
Sbjct: 427 VLIIVGI-ASMGTAGMNFGIDFTGGTNIHLNIGQ 459


>gi|229086974|ref|ZP_04219131.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-44]
 gi|228696350|gb|EEL49178.1| Protein-export membrane protein SecDF [Bacillus cereus Rock3-44]
          Length = 754

 Score =  315 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 187/690 (27%), Positives = 325/690 (47%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G +D  + R++L T AK
Sbjct: 55  GDKIDQAALVSTVGALENRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKAREILSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRPSVGLTLKSADKFREVTEKVSKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +               +        +       A V         + + GNFT+E+A  L
Sbjct: 175 MVIWLDFEEGKDSYKAEAAKPNPKFLSA-----ATVNQVFNQKEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           + +L AG+LP+ L  +   +VGA  G  ++ K   A V G+ +I LFM+V Y   GLVA 
Sbjct: 230 SDLLNAGALPVDLKEMYSTSVGAKFGEQALQKTIFASVIGIAIIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE R  +S+  +
Sbjct: 290 IMLGLYIFITLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT + A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 YRAGNHRSLATILDANITTIAAAGVLFVYGTSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560
             +++ +   K +    +    +IP              I F+         SI+  I  
Sbjct: 410 GLLVKSRYFDKKLSYFGVKEKEIIPLSKGVEHAPTRFDRINFVNIGHKFFLFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + + +  V+ +L  L+I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRMDLQSKQAISVEQVQKDLHELKIDVKKEDIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ +   + V+I++  +
Sbjct: 530 AVRTIGVLSKDEIAKAKTFFH----DKYGTDPNVSTVSPTIGKEIAQNAFIAVMIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVIALLHDAFVMIVVFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRIRDLKDLEEIVNASIRQTIGRSINTVLTVLFPVITLLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  +  G+VV   SSIF+A+ I L + + R
Sbjct: 706 SFALMVGLVVGTYSSIFVASQIWLMLENRR 735



 Score =  116 bits (290), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 90/219 (41%), Gaps = 6/219 (2%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +        +  ++ +++      +           VG K   + ++K I   +
Sbjct: 210 NQKEVSIVGGNFTVESAKQLSDLLNAGALPVDLKEMYS--TSVGAKFGEQALQKTIFASV 267

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++ + ++    L A+  L L I  TL  F        L  +AA++  +G +V
Sbjct: 268 IGIAIIFLFMLVFYRLP-GLVAVIMLGLYIFITLLVFNWMHAVLTLPGIAALVLGVGIAV 326

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  ++ Y+R+++ +++  + +S     +     +L   +  ++    +   + V+G S +
Sbjct: 327 DANIITYERLKEELRIGKSMMSAYRAGNH---RSLATILDANITTIAAAGVLFVYGTSSV 383

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FA  +   I+V   +++F    +L  +   R  + ++
Sbjct: 384 KGFATSLIVSILVGFITNVFGTRFLLGLLVKSRYFDKKL 422



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 18/133 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+   +     ++   G++ A    +                ISLGLDLRGG  ++ EV 
Sbjct: 4   RSTRIVAFFLIVLLIGGIIGATGKNVT-------------KGISLGLDLRGGFEILYEVK 50

Query: 62  E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116
                D      L      L + +   G+   +++    ++I +  A  + ++   + ++
Sbjct: 51  PAKKGDKIDQAALVSTVGALENRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKAREILS 110

Query: 117 LFLQGVNSKLNVD 129
              +     ++ +
Sbjct: 111 TQAKLTFRDVDDN 123


>gi|239945458|ref|ZP_04697395.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           roseosporus NRRL 15998]
 gi|239991922|ref|ZP_04712586.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           roseosporus NRRL 11379]
 gi|291448915|ref|ZP_06588305.1| translocase subunit secD [Streptomyces roseosporus NRRL 15998]
 gi|291351862|gb|EFE78766.1| translocase subunit secD [Streptomyces roseosporus NRRL 15998]
          Length = 776

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 195/715 (27%), Positives = 335/715 (46%), Gaps = 35/715 (4%)

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                I +        +      ++++E++RQRID +G+SE T+ R G  RI+++LP  Q
Sbjct: 35  QGGTRIVLQARDTATVEADRETTDRTLEVLRQRIDSLGVSEPTLTRSGEDRIIVELPDVQ 94

Query: 198 DPSRLRQLLGTTAKMSFHKVL--------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           DP +  +++G TA+++FH V                       L D  G    + +    
Sbjct: 95  DPRQATEVIGRTAQLTFHAVEGEGTDQPEKKTPAPDTDPDRLTLPDEQGRLLALGEPRLS 154

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD---------- 299
                +   A          V + F +   + + ++T +    P                
Sbjct: 155 GAGVEDAKAAFDAQGGAGWTVSLEFRKGAGQDWKKLTGEAACHPAGDDRRRVAIVLDEKV 214

Query: 300 ---GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
               +V  +      +PSG  QI+G+F+ + A  LA +++ G+LP+ + IVE+R VG  L
Sbjct: 215 ISSPQVDPSVGCRAGLPSGATQITGSFSADEARDLALLIKGGALPVPVEIVEQRTVGPTL 274

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G+ +I     A + G     LF+ V+Y  +G +A  ++    +++ A L  LG TLTLP 
Sbjct: 275 GAAAIDASAQAALIGAAATALFITVVYRLFGALAAVALGAYGVISYAALVALGVTLTLPG 334

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +AG VL IG+AVD+N+LV ER REE   R  +S+  +L  GF +A+S + DSN T LIA 
Sbjct: 335 LAGFVLAIGMAVDANVLVFERAREECADRPKRSLRSALTTGFQKAWSAVADSNATTLIAA 394

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSR 530
            +LFF G G V+GF +T+ + ++ SMF+A+ I RA+       + +        I     
Sbjct: 395 GLLFFLGSGPVKGFGVTLAIGVVASMFSALVIARALTEIAANSRFVSDYRGVNGIGRPGA 454

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                     +  R     + +S      ++  +   G++ G++F GG  +    +RPVD
Sbjct: 455 VRTWLVRKDPKLFRKSARWLVVSAALVAVALAGIVVRGVDLGVEFTGGRLVEYSTSRPVD 514

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +   R ++ +   GD                                ++  + E    +T
Sbjct: 515 VETARDSIAAAGFGDAEVTTAGDGD-------LSVRTGKLDNDGEHALRTALAEEGGETT 567

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
               E++GP +  EL R  ++ + ++    L Y+ +RF+W FA+ ++  ++ D+   +G 
Sbjct: 568 KVRDELIGPSLGDELRRNALIALGVAVAVQLAYLAVRFRWTFAVASVVAMVHDVILVVGA 627

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA  G   +   +AA+LT+IGYSVND VVV+DR+R+ +           +  +++ +T+ 
Sbjct: 628 FAWLGRPVDGIFLAALLTVIGYSVNDSVVVFDRVRE-LWGANRRTPLDTIARRAVLQTVP 686

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           R+V T M A   ++ +AV GG  +  FA+ +  GIVV   SS+F A P  L +  
Sbjct: 687 RTVNTGMGALFILVALAVLGGDSLADFALALLIGIVVGTCSSVFTAVPGALALER 741



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 61/218 (27%), Gaps = 4/218 (1%)

Query: 45  SLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITL 100
            LGLDL+GG+ +VL+       +          + LR  +   G+   ++ +   ++I +
Sbjct: 29  RLGLDLQGGTRIVLQARDTATVEADRETTDRTLEVLRQRIDSLGVSEPTLTRSGEDRIIV 88

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
              D +      + +    Q     +  +        T   +          +Q    A+
Sbjct: 89  ELPDVQDPRQATEVIGRTAQLTFHAVEGEGTDQPEKKTPAPDTDPDRLTLPDEQGRLLAL 148

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
            +         D     ++      +  +  +    QD  +L             + +  
Sbjct: 149 GEPRLSGAGVEDAKAAFDAQGGAGWTVSLEFRKGAGQDWKKLTGEAACHPAGDDRRRVAI 208

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
              +  +   +          L     +I+G       
Sbjct: 209 VLDEKVISSPQVDPSVGCRAGLPSGATQITGSFSADEA 246


>gi|306819788|ref|ZP_07453443.1| protein-export membrane protein SecDF [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552157|gb|EFM40093.1| protein-export membrane protein SecDF [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 726

 Score =  314 bits (804), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 218/683 (31%), Positives = 374/683 (54%), Gaps = 36/683 (5%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
                ++  I Q++E+ R+RID +G++E  I R G  RI I+LPG  + +   Q +G TA
Sbjct: 62  ATGDELTKIINQTIEVFRKRIDGMGLTEPIIVRDGDKRIRIELPGATNVNDAIQTIGKTA 121

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           +++F                             E K  + G H+  +    + K  + VV
Sbjct: 122 QLTF--------------------------LNEEGKKLLDGSHVKESKVGSNQKG-QYVV 154

Query: 271 DISFDEMGARRFFEVTRDNI--GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
            + F++ GA+ F E T++     K + ++LD +VL+AP +NQ I  G A+ISG+FT ++A
Sbjct: 155 TLKFNDEGAKLFGEATKEAAPSNKRIIIMLDDKVLSAPTVNQEILGGNAEISGSFTAQSA 214

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             LA +++AG+LP+    +E     A LG +++ K       G+ L+++FM++ Y   GL
Sbjct: 215 SELANLIQAGALPVNFTEIESSTKSAQLGDEALLKSVQGAAIGIFLVMMFMLIYYRIPGL 274

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +AD ++   +++ L L + LGATLTLP IA ++L +G+AVD+N+++ ERI+EE  + +S 
Sbjct: 275 IADIALGFYILIFLFLYTSLGATLTLPGIAALILSVGMAVDANVIIFERIKEEIIEGKSA 334

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             +L  GFS+A+STI DS +T +IA +VL+ FG G ++GFA+T+ L I++S+FTAI I +
Sbjct: 335 KAALKNGFSKAFSTIMDSQVTTVIAGIVLYAFGTGPIKGFAVTLILGIIVSLFTAIVITK 394

Query: 509 AMMIFIIRYKKMKS---IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
            +   ++ +  +++   + I+   +  +      ++ +        ISI  +I  I L F
Sbjct: 395 FLFQNLLGFIDIQNTSLLGISKNKKTEIDIKDTKLKIVDKFKIFATISIAIAIIGIGLGF 454

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
             G N GIDF GG  + +  ++ V+ + +   +++           + +    ++   + 
Sbjct: 455 AKGYNMGIDFTGGTTIDINLHKYVENNELLDIIKTYDTTASVDYLGEAKDKIQIKTTEK- 513

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                  R+    K K    +  + +  +  +GP I +E+  K IV VII++I MLIYI 
Sbjct: 514 --MEESKRLEVFSKYKEKYSLKDTDLLQSGYIGPSIGKEIQSKAIVSVIIASIFMLIYIS 571

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            RFK+ F + AI  LI D+   +  +A+F +  N   VAA+LT++GYS+ND +VV+DR+R
Sbjct: 572 FRFKFTFGISAIIALIHDVLIVISIYAIFRVPVNSPFVAAILTVVGYSINDTIVVFDRIR 631

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +N KL+   +    L D SI +T+ RS+ TS+   +S+L + + G   I  F  P+  GI
Sbjct: 632 ENAKLHPK-MDRMTLADVSIRQTVTRSINTSVTTLLSILMLYILGVDSIKEFTFPLLVGI 690

Query: 806 VVAASSSIFIAAPILLFIYDWRA 828
           +    SSIFIA+P+ +     + 
Sbjct: 691 LSGTYSSIFIASPLWVLFEKIKE 713



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 42  NRISLGLDLRGGSHLVLEVDED---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-K 97
            RI+ GLDL+GG ++V E + D   D +   +    +  R  +   G+    + +  + +
Sbjct: 40  KRINQGLDLKGGVYVVYEAETDATGDELTKIINQTIEVFRKRIDGMGLTEPIIVRDGDKR 99

Query: 98  ITLSFADSRFKENIADKVTLFLQGVN 123
           I +    +    +    +    Q   
Sbjct: 100 IRIELPGATNVNDAIQTIGKTAQLTF 125


>gi|314933801|ref|ZP_07841166.1| protein-export membrane protein SecDF [Staphylococcus caprae C87]
 gi|313653951|gb|EFS17708.1| protein-export membrane protein SecDF [Staphylococcus caprae C87]
          Length = 761

 Score =  314 bits (803), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 177/696 (25%), Positives = 321/696 (46%), Gaps = 24/696 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            +++   A++ +   +  R++ +G+SE  IQ    +RI +QL G +D ++ R+LL T A 
Sbjct: 54  GEKIDKKALQATSRTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++      +    G        +               S       T     K    +V 
Sbjct: 114 LTIRDAQDHVLMSGSDIKQGSAKQEFKQDQPTVTFKVKSKEKFKKVTEKISKKRDNVMVV 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
               + G    ++       +               IN          +G   ++ A  +
Sbjct: 174 WMDYKKGDS--YKKEAKKQQEGKDPKYVSAANVDQPINSDSVEISGGFNGKKGVKEAKQI 231

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ +I LFM+  Y   GLVA 
Sbjct: 232 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASFIGVGIIYLFMLGFYRLPGLVAI 291

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 292 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 351

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R ++
Sbjct: 352 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 411

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++     K        +     D                  F++     + +SIL  I
Sbjct: 412 SLLVSSNFFKKKYWLFGVKKKDRHDINEGKDVHDLKTSFEKWNFVKLAKPLIALSILIVI 471

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + +L    LN GIDF  G +  +  N+ +    V   ++ + +     Q         
Sbjct: 472 VGLFILSIFKLNLGIDFSSGTRADIETNQSLTQGKVEKAVKDVGLSPDQVQINGSGHKNA 531

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +        ++ + +K +  +            V P I +EL +  +  +I+++I
Sbjct: 532 TVQFKKNLSRAEDNKLSDKIKSEFGDT------PQINSVSPLIGQELAKNAMTALILASI 585

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L A+  L+ DI   +  F+LF +E +LT +AAVLT++GYS+ND +
Sbjct: 586 GIIIYVSLRFEWRMGLSAVLALLHDIFIIVAVFSLFRLEVDLTFIAAVLTIVGYSINDTI 645

Query: 739 VVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+       S     D++++SI +T+ RS+ T +   + V+ + ++G   I 
Sbjct: 646 VTFDRVRENLHKVKVVTSPEQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILIFGAPTIF 705

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +F++ +  G++    SS+FIA P+   +   + K +
Sbjct: 706 NFSLALLIGLISGVFSSVFIAVPLWGIMKKRQLKKS 741



 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 77/178 (43%), Gaps = 4/178 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             VG +  ++ + K I    I    + +++   ++    L AI  L   I  TL  F   
Sbjct: 250 NSVGAQFGQDALDKTIFASFIGVGIIYLFMLGFYRLP-GLVAIIALTTYIYLTLVAFNFI 308

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                L  +AA++  +G +V+  +++Y+R++  +++     + +    K+   +      
Sbjct: 309 SGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI---GRTLKQAYSKANKSSFLTIFD 365

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +++   I+   +  +G S +  FA  +  GI++   +++F++  +L  +        +
Sbjct: 366 SNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLLSLLVSSNFFKKK 423


>gi|149198083|ref|ZP_01875130.1| protein-export membrane protein SECD [Lentisphaera araneosa
           HTCC2155]
 gi|149138685|gb|EDM27091.1| protein-export membrane protein SECD [Lentisphaera araneosa
           HTCC2155]
          Length = 903

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 208/710 (29%), Positives = 341/710 (48%), Gaps = 30/710 (4%)

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISESTIQRLGSHRIL 190
            +      E  +    + +      AIE      E++++RID  G++E+ I+    + +L
Sbjct: 168 GIDLKGGVEFIVAFDPDELKPEDGEAIEVRDKIVEVLKKRIDSKGVAEAEIRPFSDNTVL 227

Query: 191 IQLPGEQDPSR--LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR---------DSDGN 239
           +++P   D  R  +  L+   A++ F  +                               
Sbjct: 228 VRVPVVNDAERNAVASLITRQAELQFRALHETRPNGPKQPEDIGYELVYSKADESGRPPE 287

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             L++ + E++G  +   +   DP     VV  +F++ GA+ F EVT   + K LA+VLD
Sbjct: 288 VLLLKVEPEMTGKDIVKTSYGQDPDGGGWVVSKTFNQEGAKDFGEVTERFVQKRLAIVLD 347

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G   +AP I   I  G AQI G  +IE A  LA +L++GSLP+K+NI  E    A LG  
Sbjct: 348 GVCYSAPRIQAVINGGTAQIDGMDSIEEAAELALVLQSGSLPVKINIDGESRTDATLGES 407

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           SI  G    + G++ ++LFM+  Y   GL A   + +N++L    + + GAT TLP IAG
Sbjct: 408 SIKSGVMMTIIGVLGVMLFMMWWYKLPGLFAAIGLVINLVLLATSMMIYGATFTLPGIAG 467

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I L +G+AVDSN+L+ ERIREE    +    +   GF+RA++ IFD+N+T  I+ ++L+ 
Sbjct: 468 IALTLGMAVDSNVLIFERIREELSTGRIADNATREGFARAFTAIFDANLTTFISALILYN 527

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
           FG G ++GFAIT+ + I+ +MFTAI + R    ++   ++     I+ L           
Sbjct: 528 FGTGPIQGFAITLSIGIITTMFTAIFVSRIFFDWMNNGERGDKKVISGLGTSKKW----N 583

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSNL 598
           I F + R     +S +    SI  L T G +   +DF GG  L              +  
Sbjct: 584 INFWKNRKKAFLLSTILCGVSIVTLVTKGTDALSVDFTGGTALSYQVEGEAPDQEKIAAA 643

Query: 599 ESLQIGDISFQNF--------DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S ++   S +                + +            +V  ++ K  +E      
Sbjct: 644 LSSELKVKSPRIAYKTAVGAEGKSLELVFKDLPGEDADTFAKKVDALLNKIGSETGATFV 703

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
               E +G  +  +   K +  ++   +A+ IYI  RF+  FA+GAI  L  D    +G 
Sbjct: 704 NNGGESIGGLVGEQFKSKALSAMLWVMVAIFIYITFRFESVFAIGAIAALAHDALIAVGI 763

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F L G + +L  + AVLT++GYS+ND +VVYDR+R+         S  ++++ +IN+ LG
Sbjct: 764 FVLLGNQISLPIIGAVLTIMGYSLNDTIVVYDRIREKSGDIKKK-SIFEIVNTAINDMLG 822

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           R++ TS+     V+ + + GG  +  FA  +  GI V   SSI++AAPI+
Sbjct: 823 RTIITSLTTLFVVIVLCLGGG--VQEFATVLTIGIGVGTFSSIYVAAPIV 870



 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 86/213 (40%), Gaps = 4/213 (1%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G    +      +  +   +     I         +    I+ G++  II  + +
Sbjct: 364 TAQIDGMDSIEEAAELALVLQSGSLPVKINIDGESRTDATLGESSIKSGVMMTIIGVLGV 423

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++++   +K    L A   L++++        ++G  F L  +A +   +G +V+  V++
Sbjct: 424 MLFMMWWYKLP-GLFAAIGLVINLVLLATSMMIYGATFTLPGIAGIALTLGMAVDSNVLI 482

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++R+R+ +   +T     +   +            ++  FIS L +  +G   I  FAI 
Sbjct: 483 FERIREEL---STGRIADNATREGFARAFTAIFDANLTTFISALILYNFGTGPIQGFAIT 539

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++ GI+    ++IF++     ++ +    + ++
Sbjct: 540 LSIGIITTMFTAIFVSRIFFDWMNNGERGDKKV 572



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/416 (12%), Positives = 116/416 (27%), Gaps = 26/416 (6%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF------LQMY 73
              +P+F  + ++ R    +   R+ LG+DL+GG   ++  D D+               
Sbjct: 142 FFGMPSFSNKKVVSRLQGEV-SGRLKLGIDLKGGVEFIVAFDPDELKPEDGEAIEVRDKI 200

Query: 74  SDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKEN--IADKVTLFLQGVNSKL---- 126
            + L+  +  +G+    +R    N + +        E   +A  +T   +     L    
Sbjct: 201 VEVLKKRIDSKGVAEAEIRPFSDNTVLVRVPVVNDAERNAVASLITRQAELQFRALHETR 260

Query: 127 ------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                   D    L+ +  ++            +      +       Q  D  G   S 
Sbjct: 261 PNGPKQPEDIGYELVYSKADESGRPPEVLLLKVEPEMTGKDIVKTSYGQDPDGGGWVVSK 320

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                  +   ++       RL  +L      +       N     + G+  + ++    
Sbjct: 321 TFNQEGAKDFGEVTERFVQKRLAIVLDGVCYSAPRIQAVINGGTAQIDGMDSIEEAAELA 380

Query: 241 YLVEDK-----VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +++       + I G          +      V+      +G   F        G   A
Sbjct: 381 LVLQSGSLPVKINIDGESRTD-ATLGESSIKSGVMMTIIGVLGVMLFMMWWYKLPGLFAA 439

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           + L   ++          +            T G+           I+  +   R     
Sbjct: 440 IGLVINLVLLATSMMIYGATFTLPGIAGIALTLGMAVDSNVLIFERIREELSTGRIADNA 499

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                    T    A L   +  +I+     G +  F+I L++ +   + + +  +
Sbjct: 500 TREGFARAFTAIFDANLTTFISALILYNFGTGPIQGFAITLSIGIITTMFTAIFVS 555


>gi|239927381|ref|ZP_04684334.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           ghanaensis ATCC 14672]
          Length = 772

 Score =  313 bits (801), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 195/704 (27%), Positives = 322/704 (45%), Gaps = 27/704 (3%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +I +        +    A ++++E++R R+D +G++E TI R G +RI+++LPG QDP
Sbjct: 37  GTQIVLETRSTATAKADGEATDRTLEVLRGRVDALGVAEPTIVRSGENRIIVELPGVQDP 96

Query: 200 SRLRQLLGTTAKMSFHKV--LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
            +   +LG TA++S H V      S +      R L D  G +  +              
Sbjct: 97  RKAADVLGRTAQLSVHAVLGAATESTEPEAKDERILADEAGERLRLSAASLTGKDVEGAD 156

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP---- 313
                       V + F +                         VL   +I+        
Sbjct: 157 AQFDQQSGAGWHVTVDFKDDKGWAKLTGEAACNPAGDPKRRIAIVLDNKIISSPQVDPSV 216

Query: 314 -------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                   G  QI+G+F+ + A  LA ++  G+LP+ +  VE+R VG  LG+++I     
Sbjct: 217 SCGVGIAGGSTQITGSFSSDEARELALLVEGGALPVPVETVEQRTVGPTLGAEAIKSSAY 276

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           A   G  L  LF+IV+Y   G +A  ++    +++ A L+ LGATLTLP +AG VL IG+
Sbjct: 277 AAALGTALTALFIIVVYRLMGFLATVALACYGVISYAALAGLGATLTLPGLAGFVLAIGM 336

Query: 427 AVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           AVD+N+LV ER REE   R   S   +L  GF  A+S I DSNIT LIA  +LF    G 
Sbjct: 337 AVDANVLVFERAREEYGKRNRPSGRSALTAGFKGAFSAIADSNITTLIAAGLLFLLASGP 396

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLIPDCIAI 540
           V+GF +T+ + ++ SM +A+ I R +  F +  + +           + R          
Sbjct: 397 VKGFGVTLAIGVIASMISALVITRVLAEFAVERRWVHRRPQITGLASIGRVREYLTRRNP 456

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           Q MR     + +S++  + +   +   GLN+G++F GG  +     + VD    R  L  
Sbjct: 457 QLMRRPRRWLLVSLVVLLVTGAGIAVRGLNFGVEFTGGRLIEYTTTKTVDPDRAREALAD 516

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                   Q+                           V + I ++   +     E++GP 
Sbjct: 517 AGFPQAVVQSSGDNG-------LTVRTEELSNAEAVKVAEAIDQVGGGAEKVRDELIGPS 569

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +  EL R  ++ + ++  A L+Y+  RF+W F   A+ TL  D+    G FA  G   + 
Sbjct: 570 LGDELRRNALIALGLALGAQLLYLAFRFRWMFGTSAVATLAHDVVILTGIFAWLGKPIDG 629

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +AA+LT+IGYSVND VVV+DR+R+ +             + +I +T+ R+V T +   
Sbjct: 630 VFLAALLTVIGYSVNDSVVVFDRVRE-LWTKDRKAPLAQSTNLAILQTVPRTVNTGIGVI 688

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +  +A+ GG  +  FA+ +  G++V   SS+  A+P+ + + 
Sbjct: 689 FILAALALLGGDSLTDFALALLIGMLVGTYSSVLTASPLAIELD 732



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 2/179 (1%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VGP +  E I+       +      ++I + ++      A   L      +    A 
Sbjct: 259 QRTVGPTLGAEAIKSSAYAAALGTALTALFIIVVYRL-MGFLATVALACYGVISYAALAG 317

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    L  +A  +  IG +V+  V+V++R R+         S R  +            
Sbjct: 318 LGATLTLPGLAGFVLAIGMAVDANVLVFERAREEYGK-RNRPSGRSALTAGFKGAFSAIA 376

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   I+   + +     +  F + +A G++ +  S++ I   +  F  + R  + R
Sbjct: 377 DSNITTLIAAGLLFLLASGPVKGFGVTLAIGVIASMISALVITRVLAEFAVERRWVHRR 435



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 66/470 (14%), Positives = 135/470 (28%), Gaps = 34/470 (7%)

Query: 1   MRNN-PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+    +  +    +  + L I +                    + LGLDLRGG+ +VLE
Sbjct: 1   MKRPARFRALFALAVMAVSLYITV-----------------TVPVRLGLDLRGGTQIVLE 43

Query: 60  ---VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKV 115
                             + LR  +   G+   ++ R  +N+I +     +     AD +
Sbjct: 44  TRSTATAKADGEATDRTLEVLRGRVDALGVAEPTIVRSGENRIIVELPGVQDPRKAADVL 103

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q     +     ++      ++ I    +   +    +    + +E    + DQ  
Sbjct: 104 GRTAQLSVHAVLGAATESTEPEAKDERILADEAGERLRLSAASLTGKDVEGADAQFDQQS 163

Query: 176 ISESTIQRLGSHRILIQL-------PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
            +   +                       DP R   ++     +S  +V P+ S    + 
Sbjct: 164 GAGWHVTVDFKDDKGWAKLTGEAACNPAGDPKRRIAIVLDNKIISSPQVDPSVSCGVGIA 223

Query: 229 GVRFLRDSDGNQYLVEDKVEI-SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
           G         +     +   +  G  L       + +T  P +     +  A      T 
Sbjct: 224 GGSTQITGSFSSDEARELALLVEGGALPVPVETVEQRTVGPTLGAEAIKSSAYAAALGTA 283

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                 + V      L    +        A ++G     T   LA  + A  + +  N++
Sbjct: 284 LTALFIIVVYRLMGFLATVALACYGVISYAALAGLGATLTLPGLAGFVLAIGMAVDANVL 343

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                  + G  +   G  A+ AG       +        +    +  L  +L    +  
Sbjct: 344 VFERAREEYGKRNRPSGRSALTAGFKGAFSAIA----DSNITTLIAAGLLFLLASGPVKG 399

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
            G TL +  IA ++  + +         ER     R   +   S+     
Sbjct: 400 FGVTLAIGVIASMISALVITRVLAEFAVERRWVHRRPQITGLASIGRVRE 449


>gi|205374311|ref|ZP_03227110.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           coahuilensis m4-4]
          Length = 754

 Score =  313 bits (801), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 198/703 (28%), Positives = 337/703 (47%), Gaps = 35/703 (4%)

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           S  + D++    +  +   + +RI+ IG+SE  IQ   S+RI +QL G +D +  R+LL 
Sbjct: 50  SLEDGDEITEKVVSDTATALDKRINVIGVSEPNIQIENSNRIRVQLAGVEDQAEARELLS 109

Query: 208 TTAKMSFHKVLPNNSKKGFMF---GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
             A ++F  V       G          + DS  N  +V  ++             +   
Sbjct: 110 AQANLTFRDVNDEVKLSGKDIKAGSATQVFDSQTNNPIVSVELNDQKKFYEVTQEIYANY 169

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
            +  +V     E G     E T+               ++AP +N+ I S   QI GNFT
Sbjct: 170 PNNQLVIWMDFEEGDSYAAEATKAEPK----------FISAPNVNEPINSSTVQIEGNFT 219

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++ A  LA +L AGSLP+KL  +   +VGA  G  ++ +   A + G+ L+ LFM+V Y 
Sbjct: 220 LDEAKNLAELLNAGSLPVKLEEIYSTSVGASFGEKALNETIFAGMIGIALVFLFMLVFYR 279

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             GLVA  ++   + L L +   +   LTLP IA ++LG+G+AVD+NI+  ERI+EE + 
Sbjct: 280 LPGLVAVITLSTYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKI 339

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            + V  +  +G   ++ TI D+NIT L+A +VLF FG  +V+GFA  + +SIL+S  TA+
Sbjct: 340 GRPVEGAFQVGNKNSFMTILDANITTLLAGIVLFSFGTSSVKGFATMLIVSILLSFITAV 399

Query: 505 SIVRAMMIFIIRYKKMKSID-------------INPLSRFFLIPDCIAIQFMRARFWGVG 551
              R ++  +++   +                    L    L        F+  R     
Sbjct: 400 WGSRILLGLLVKSNLLNGKPGLLGVKKEEIRPISEGLDPLDLTTKFDRFDFVAKRKLFFS 459

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
           IS +     + +LF   LN GIDF  G ++ +L+   +    ++  LES+ +   +    
Sbjct: 460 ISTILIAAGLVILFIFKLNLGIDFASGTRMEILSENGLSQQELKEELESIGMESDNIVIS 519

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
             +    V              +    K+            +   V P I +EL R  + 
Sbjct: 520 GEQNEIGVVRYTDDLGQSDINELKSHFKEIYGAE------PSISTVSPVIGKELARNALY 573

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V I++I +++Y+ +RF+   A+ AI  L+ D    + FF+L  +E ++T +AAVLT++G
Sbjct: 574 AVAIASIGIILYVTVRFEIRMAVAAIVALLHDAFFIIAFFSLTRLEVDITFIAAVLTIVG 633

Query: 732 YSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           YS+ND +V +DR+R+N++       +    ++++ S+ +TL RSV T +    +V+ + +
Sbjct: 634 YSINDTIVTFDRIRENLQKKKKLKSNEDIAEVVNASLRQTLARSVATVITVVFAVVALML 693

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +G S I +F+I +  G+V    SS+FIAA +   +     K  
Sbjct: 694 FGSSSISNFSIALLVGLVSGTYSSVFIAAQLWYVLKCQELKKK 736



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 90/259 (34%), Gaps = 9/259 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                + + +        +   +  E   I   +           +   +   ++     
Sbjct: 169 YPNNQLVIWMDFEEGDSYAAEATKAEPKFISAPNVNEPINSSTVQIEGNFTLDEAKNLAE 228

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           +L         +        +  VG     + + + I   +I    + +++ + ++    
Sbjct: 229 LLNA-----GSLPVKLEEIYSTSVGASFGEKALNETIFAGMIGIALVFLFMLVFYRLP-G 282

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L A+ TL   I   L  F        L  +AA++  +G +V+  ++ Y+R+++ +K+   
Sbjct: 283 LVAVITLSTYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKI--- 339

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
                         +    +  ++   ++ + +  +G S +  FA  +   I+++  +++
Sbjct: 340 GRPVEGAFQVGNKNSFMTILDANITTLLAGIVLFSFGTSSVKGFATMLIVSILLSFITAV 399

Query: 814 FIAAPILLFIYDWRAKNAR 832
           + +  +L  +      N +
Sbjct: 400 WGSRILLGLLVKSNLLNGK 418



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 90/748 (12%), Positives = 199/748 (26%), Gaps = 52/748 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           + +  +  L   I     +    + +  +             I LGLDL+GG  ++ EV 
Sbjct: 3   KRSRIVAFLLVFIVLAATIGTTSSNILSN-------------IKLGLDLQGGFEVLYEVK 49

Query: 61  ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116
              D D+     +   +  L   +   G+   +++ +  N+I +  A    +    + ++
Sbjct: 50  SLEDGDEITEKVVSDTATALDKRINVIGVSEPNIQIENSNRIRVQLAGVEDQAEARELLS 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                    +N + K +           +  SQ N   V     +Q              
Sbjct: 110 AQANLTFRDVNDEVKLSGKDIKAGSATQVFDSQTNNPIVSVELNDQKKFYEV-------T 162

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E       +  ++     E D             +S   V    +         F  D 
Sbjct: 163 QEIYANYPNNQLVIWMDFEEGDSYAAEATKAEPKFISAPNVNEPINSSTVQIEGNFTLDE 222

Query: 237 DGNQYLV--EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             N   +     + +    +   +             I    +G    F         P 
Sbjct: 223 AKNLAELLNAGSLPVKLEEIYSTSVGASFGEKALNETIFAGMIGIALVFLFMLVFYRLPG 282

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            V +        +I          ++          +   + A  +  +    E +    
Sbjct: 283 LVAVITLSTYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKIGRP 342

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
             G+  +      +      I   +  +       +    F  +++   LLS + A    
Sbjct: 343 VEGAFQVGNKNSFMTILDANITTLLAGIVLFSFGTSSVKGFATMLIVSILLSFITAVWGS 402

Query: 415 PSIAGIVL---GIGLAVDSNILVNERIR--EENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
             + G+++    +        +  E IR   E      +    D     A   +F S  T
Sbjct: 403 RILLGLLVKSNLLNGKPGLLGVKKEEIRPISEGLDPLDLTTKFDRFDFVAKRKLFFSIST 462

Query: 470 ALIAT--VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR-------YKKM 520
            LIA   V+LF F       FA    + IL     +   ++  +  I           + 
Sbjct: 463 ILIAAGLVILFIFKLNLGIDFASGTRMEILSENGLSQQELKEELESIGMESDNIVISGEQ 522

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
             I +   +      D   ++      +G   SI      I         Y +       
Sbjct: 523 NEIGVVRYTDDLGQSDINELKSHFKEIYGAEPSISTVSPVIGKELARNALYAVAIASIGI 582

Query: 581 L---GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           +    V     + ++ + + L         F     E +             +    +  
Sbjct: 583 ILYVTVRFEIRMAVAAIVALLHDAFFIIAFFSLTRLEVDITFIAAVLTIVGYSINDTIVT 642

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             +    +     +++ E +   ++  L +     V      +   + +     F   +I
Sbjct: 643 FDRIRENLQKKKKLKSNEDIAEVVNASLRQTLARSVATVITVVFAVVAL---MLFGSSSI 699

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAA 725
           +   + +        L    ++   +AA
Sbjct: 700 SNFSIALLV-----GLVSGTYSSVFIAA 722


>gi|291435725|ref|ZP_06575115.1| translocase subunit secD/protein translocase subunit secF
           [Streptomyces ghanaensis ATCC 14672]
 gi|291338620|gb|EFE65576.1| translocase subunit secD/protein translocase subunit secF
           [Streptomyces ghanaensis ATCC 14672]
          Length = 777

 Score =  313 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 195/704 (27%), Positives = 322/704 (45%), Gaps = 27/704 (3%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +I +        +    A ++++E++R R+D +G++E TI R G +RI+++LPG QDP
Sbjct: 42  GTQIVLETRSTATAKADGEATDRTLEVLRGRVDALGVAEPTIVRSGENRIIVELPGVQDP 101

Query: 200 SRLRQLLGTTAKMSFHKV--LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
            +   +LG TA++S H V      S +      R L D  G +  +              
Sbjct: 102 RKAADVLGRTAQLSVHAVLGAATESTEPEAKDERILADEAGERLRLSAASLTGKDVEGAD 161

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP---- 313
                       V + F +                         VL   +I+        
Sbjct: 162 AQFDQQSGAGWHVTVDFKDDKGWAKLTGEAACNPAGDPKRRIAIVLDNKIISSPQVDPSV 221

Query: 314 -------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                   G  QI+G+F+ + A  LA ++  G+LP+ +  VE+R VG  LG+++I     
Sbjct: 222 SCGVGIAGGSTQITGSFSSDEARELALLVEGGALPVPVETVEQRTVGPTLGAEAIKSSAY 281

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           A   G  L  LF+IV+Y   G +A  ++    +++ A L+ LGATLTLP +AG VL IG+
Sbjct: 282 AAALGTALTALFIIVVYRLMGFLATVALACYGVISYAALAGLGATLTLPGLAGFVLAIGM 341

Query: 427 AVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           AVD+N+LV ER REE   R   S   +L  GF  A+S I DSNIT LIA  +LF    G 
Sbjct: 342 AVDANVLVFERAREEYGKRNRPSGRSALTAGFKGAFSAIADSNITTLIAAGLLFLLASGP 401

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLIPDCIAI 540
           V+GF +T+ + ++ SM +A+ I R +  F +  + +           + R          
Sbjct: 402 VKGFGVTLAIGVIASMISALVITRVLAEFAVERRWVHRRPQITGLASIGRVREYLTRRNP 461

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           Q MR     + +S++  + +   +   GLN+G++F GG  +     + VD    R  L  
Sbjct: 462 QLMRRPRRWLLVSLVVLLVTGAGIAVRGLNFGVEFTGGRLIEYTTTKTVDPDRAREALAD 521

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                   Q+                           V + I ++   +     E++GP 
Sbjct: 522 AGFPQAVVQSSGDNG-------LTVRTEELSNAEAVKVAEAIDQVGGGAEKVRDELIGPS 574

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +  EL R  ++ + ++  A L+Y+  RF+W F   A+ TL  D+    G FA  G   + 
Sbjct: 575 LGDELRRNALIALGLALGAQLLYLAFRFRWMFGTSAVATLAHDVVILTGIFAWLGKPIDG 634

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +AA+LT+IGYSVND VVV+DR+R+ +             + +I +T+ R+V T +   
Sbjct: 635 VFLAALLTVIGYSVNDSVVVFDRVRE-LWTKDRKAPLAQSTNLAILQTVPRTVNTGIGVI 693

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +  +A+ GG  +  FA+ +  G++V   SS+  A+P+ + + 
Sbjct: 694 FILAALALLGGDSLTDFALALLIGMLVGTYSSVLTASPLAIELD 737



 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 65/179 (36%), Gaps = 2/179 (1%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VGP +  E I+       +      ++I + ++      A   L      +    A 
Sbjct: 264 QRTVGPTLGAEAIKSSAYAAALGTALTALFIIVVYRL-MGFLATVALACYGVISYAALAG 322

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    L  +A  +  IG +V+  V+V++R R+         S R  +            
Sbjct: 323 LGATLTLPGLAGFVLAIGMAVDANVLVFERAREEYGK-RNRPSGRSALTAGFKGAFSAIA 381

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   I+   + +     +  F + +A G++ +  S++ I   +  F  + R  + R
Sbjct: 382 DSNITTLIAAGLLFLLASGPVKGFGVTLAIGVIASMISALVITRVLAEFAVERRWVHRR 440



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 65/469 (13%), Positives = 134/469 (28%), Gaps = 34/469 (7%)

Query: 2   RNN-PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +    +  +    +  + L I +                    + LGLDLRGG+ +VLE 
Sbjct: 7   KRPARFRALFALAVMAVSLYITV-----------------TVPVRLGLDLRGGTQIVLET 49

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                            + LR  +   G+   ++ R  +N+I +     +     AD + 
Sbjct: 50  RSTATAKADGEATDRTLEVLRGRVDALGVAEPTIVRSGENRIIVELPGVQDPRKAADVLG 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
              Q     +     ++      ++ I    +   +    +    + +E    + DQ   
Sbjct: 110 RTAQLSVHAVLGAATESTEPEAKDERILADEAGERLRLSAASLTGKDVEGADAQFDQQSG 169

Query: 177 SESTIQRLGSHRILIQL-------PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
           +   +                       DP R   ++     +S  +V P+ S    + G
Sbjct: 170 AGWHVTVDFKDDKGWAKLTGEAACNPAGDPKRRIAIVLDNKIISSPQVDPSVSCGVGIAG 229

Query: 230 VRFLRDSDGNQYLVEDKVEI-SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                    +     +   +  G  L       + +T  P +     +  A      T  
Sbjct: 230 GSTQITGSFSSDEARELALLVEGGALPVPVETVEQRTVGPTLGAEAIKSSAYAAALGTAL 289

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                + V      L    +        A ++G     T   LA  + A  + +  N++ 
Sbjct: 290 TALFIIVVYRLMGFLATVALACYGVISYAALAGLGATLTLPGLAGFVLAIGMAVDANVLV 349

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 + G  +   G  A+ AG       +        +    +  L  +L    +   
Sbjct: 350 FERAREEYGKRNRPSGRSALTAGFKGAFSAIA----DSNITTLIAAGLLFLLASGPVKGF 405

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           G TL +  IA ++  + +         ER     R   +   S+     
Sbjct: 406 GVTLAIGVIASMISALVITRVLAEFAVERRWVHRRPQITGLASIGRVRE 454


>gi|206969970|ref|ZP_03230924.1| protein-export membrane protein SecDF [Bacillus cereus AH1134]
 gi|206735658|gb|EDZ52826.1| protein-export membrane protein SecDF [Bacillus cereus AH1134]
          Length = 754

 Score =  313 bits (800), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 187/687 (27%), Positives = 324/687 (47%), Gaps = 23/687 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVDDNLLMDGTDLKGGGAKQTFDEQGRASVGLTLKSAEKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+     A      +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESAKPNPKFLSAATVNQVFNQAEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE +  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELKIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T L A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 FRAGNHRSLATILDANVTTLAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIA-----------IQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPGYFGVKQKDIIPLTKGVVHPPTRFDRINFVNIGHKFLIFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + V +S V  + + L I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRIDLQSKQAVTVSDVHKDFKELNIDVKEENIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTLGVLSKDEIAKTKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVMFSIFQLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +TLGRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRVRDIKDLEEIVNASIRQTLGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIY 824
           +  +  G++V   SS+F+A+ I L + 
Sbjct: 706 SFALLVGLIVGTYSSVFVASQIWLMLE 732



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 18/130 (13%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
                   ++   G++ A    +                ISLGLDLRGG  ++ EV    
Sbjct: 7   RIAAFFLIVLLIGGVIGAAGKDI-------------AKGISLGLDLRGGFEILYEVKPAK 53

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D      L      L + +   G+   +++ + Q++I +  A  + ++   + ++   
Sbjct: 54  KGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGQDRIRVQLAGVQDQQKAREMLSTQA 113

Query: 120 QGVNSKLNVD 129
           +     ++ +
Sbjct: 114 KLTFRDVDDN 123


>gi|228993150|ref|ZP_04153072.1| Protein-export membrane protein SecDF [Bacillus pseudomycoides DSM
           12442]
 gi|228766609|gb|EEM15250.1| Protein-export membrane protein SecDF [Bacillus pseudomycoides DSM
           12442]
          Length = 754

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 181/690 (26%), Positives = 320/690 (46%), Gaps = 23/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++  +  R++ +G+SE  IQ  G  RI +QL G QD  + R++L T AK
Sbjct: 55  GDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKAREILSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVNDNLLMDGADLKGGGAKQTFDEQGRPSVGLTLKSADKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +               +        +    V       +        + GNFT+E+A  L
Sbjct: 175 MVIWLDFEEGKDSYKAEAAKPNPKFLSAATVNQVFNQAEVSI-----VGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ LI LFM+V Y   GLVA 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGEQALQETIFASAIGIALIFLFMLVFYRLPGLVAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE R  +S+  +
Sbjct: 290 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT + A  VLF +G  +V+GFA ++ +SIL+   T +   R ++
Sbjct: 350 YRAGNHRSLATILDANITTIAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-----------CIAIQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+         S++  I  
Sbjct: 410 GLLVKSRYFDKKMSYFGVKQREIIPLSKGVEHAPTRFDRINFVNIGHKFFLFSVVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + + + +  V+ +L  L+I            +    
Sbjct: 470 AIILPIFKMNLGIDFASGTRMDLQSKQAISVDQVQKDLHELKIDVKKEDIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 530 AVRTIGVLSKDEIAKAKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYALSAVLALLHDAFVMIVVFSVFRLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRIRDLKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++ +  G+VV   SS+F+A+ I L + + R
Sbjct: 706 SLALMVGLVVGTYSSVFVASQIWLMLENRR 735



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 81/186 (43%), Gaps = 4/186 (2%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                 +  VG K   + +++ I    I    + +++ + ++    L A+  L L I  T
Sbjct: 241 DLKEMYSTSVGAKFGEQALQETIFASAIGIALIFLFMLVFYRLP-GLVAVIMLGLYIFVT 299

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L  F        L  +AA++  +G +V+  ++ Y+R+++ +++  + +S     +     
Sbjct: 300 LLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSAYRAGNH---R 356

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +L   +  ++    +   + V+G S +  FA  +   I+V   +++F    +L  +   R
Sbjct: 357 SLATILDANITTIAAAGVLFVYGNSSVKGFATSLIVSILVGFITNVFGTRFLLGLLVKSR 416

Query: 828 AKNARI 833
             + ++
Sbjct: 417 YFDKKM 422



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 51/136 (37%), Gaps = 20/136 (14%)

Query: 1   MRNNPWLVILYSMICCI--GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           M      ++ + +I  +  G++ A    +                ISLGLDLRGG  ++ 
Sbjct: 1   MAKRGTRIVAFFLIVLLIGGIIGATGKNIT-------------KGISLGLDLRGGFEILY 47

Query: 59  EVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIAD 113
           EV      D      L      L + +   G+   +++    ++I +  A  + ++   +
Sbjct: 48  EVKPAKKGDKIDRDVLVSTVGALENRVNVLGVSEPNIQIEGEDRIRVQLAGVQDQQKARE 107

Query: 114 KVTLFLQGVNSKLNVD 129
            ++   +     +N +
Sbjct: 108 ILSTQAKLTFRDVNDN 123


>gi|152976829|ref|YP_001376346.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           cereus subsp. cytotoxis NVH 391-98]
 gi|152025581|gb|ABS23351.1| protein-export membrane protein SecD [Bacillus cytotoxicus NVH
           391-98]
          Length = 752

 Score =  312 bits (799), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 185/687 (26%), Positives = 326/687 (47%), Gaps = 23/687 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G +D  + R++L T AK
Sbjct: 55  GDKIDHDALVSTVGALNNRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKAREILSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +   Q      + +              K   P   
Sbjct: 115 LTFRDVNDNLLMDGADLKGGGAKQTFDEQGRPSVGLTLKSADKFREVTEKISKMPPPTNL 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +          FE  +D+            +  A V      +  + + GNFT+E+A  L
Sbjct: 175 MVIWLD-----FEEGKDSYKAESTKPNPKFLSAATVNQVFNQTEVSIVGGNFTVESAKQL 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A V G+ LI LFM+V Y   G +A 
Sbjct: 230 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEETIFASVIGIALIFLFMLVFYRLPGFIAV 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE R  +S+  +
Sbjct: 290 IMLGLYIFMTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+NIT L A  VLF +G  +V+GFA ++ +SI +   T +   R ++
Sbjct: 350 YRSGNHRSLATILDANITTLAAAGVLFVYGTSSVQGFATSLIVSIFVGFITNVFGTRFLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-----------CIAIQFMRARFWGVGISILFSICS 560
             +++ +           +   I                I F+      +  SI+  I  
Sbjct: 410 GLLVKSRYFDKKPAYFGVKQKEIIPLSKGVEHAPTKFDRINFVSIGHKFLLFSIVVVIAG 469

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    LN GIDF  G ++ + + + + +S V  +L  L+I            +    
Sbjct: 470 AIILPIFKLNLGIDFASGTRMDLQSKQTISVSQVYKDLHELKIDVKEEDIVPTGDDNKGF 529

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G    +                  T  N   V P I +E+ +   + V+I++  +
Sbjct: 530 AVRTIGVLSKEEIAKAKTFFH----DKYGTEPNVSTVSPTIGKEIAQNAFIAVLIASAVI 585

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +A+ A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 586 ILYVSIRFRFTYAVSAVAALLHDAFVMIVVFSIFRLEVDLTFIAAVLTIIGYSINDSIVT 645

Query: 741 YDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K       S    ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 646 FDRNRELYKQKKRIRDSKDLEEIVNASIRQTIGRSINTVLTVLFPVIALMIFGSESLRNF 705

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIY 824
           +  +  G+VV   SS+F+A+ I L + 
Sbjct: 706 SFALMIGLVVGTYSSVFVASQIWLMLE 732



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 51/133 (38%), Gaps = 18/133 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+   +    +++   G++ A    +                ISLGLDLRGG  ++ +V 
Sbjct: 4   RSTRIVAFFLTVLLIGGIIGATGKNIT-------------KGISLGLDLRGGFEILYQVK 50

Query: 62  E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116
                D   +  L      L + +   G+   +++    ++I +  A  + ++   + ++
Sbjct: 51  PAKKGDKIDHDALVSTVGALNNRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKAREILS 110

Query: 117 LFLQGVNSKLNVD 129
              +     +N +
Sbjct: 111 TQAKLTFRDVNDN 123


>gi|332287133|ref|YP_004422034.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila
            psittaci 6BC]
 gi|313847729|emb|CBY16719.1| putative protein export protein [Chlamydophila psittaci RD1]
 gi|325506649|gb|ADZ18287.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila
            psittaci 6BC]
 gi|328914374|gb|AEB55207.1| protein-export membrane protein SecD, putative [Chlamydophila
            psittaci 6BC]
          Length = 1404

 Score =  312 bits (797), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 187/838 (22%), Positives = 350/838 (41%), Gaps = 57/838 (6%)

Query: 41   KNRISLGLDLRGGSHLVLEV---DEDDFVNGF-LQMYSDELRSFLKKEGIGVFSMRQIQN 96
             + + LG+D  GG  + L           +   +   SDEL + L + G+    +R+  +
Sbjct: 576  DSVLRLGIDFIGGKQIRLAFKDHQGKQLTDKEGILKVSDELYARLNRLGVSEVEIRREGD 635

Query: 97   KITLSFADSRFK--ENIADKVTLFLQGVNSKL-NVDPKKNLLVTTTEKEISIVLSQNNID 153
             + LS   S     E I     +    VN K       +  +    +    +  +  + D
Sbjct: 636  NVHLSVPGSTKISSEEILGTSQMTFHVVNEKFSPYSALRYEVQRFLD---YLWFTAQSQD 692

Query: 154  QVISHAI-EQSMEIIRQRIDQI--GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
                 A+ + +  I      ++   + E+  +          +  E   S L       A
Sbjct: 693  ATSPEAVNKLASYIFNNPDSRLPSSVQEAVAKLQQEGLAFPNMDSEISSSHLDTTYSMIA 752

Query: 211  KMSF--------HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
                          V  N +  G          + G  Y++   V+ +GI       +  
Sbjct: 753  IEKDVEGKANPLMIVFRNYALDGASLKNIRPEFAVGEGYILNFSVKDTGIAQKAYDVSPR 812

Query: 263  PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               H         + G          +       V+    + +  +  A    +A +SG 
Sbjct: 813  ESFHAWTSTYC--QEGISGTENGQYSSGRGWRMAVVLDGYVVSDPVLNAPLKDQASVSGK 870

Query: 323  FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            F+      LA  L++GS+     ++ E  +  +LG     +G  ++  GL ++++ M V 
Sbjct: 871  FSHREVNRLATDLKSGSMSFVPEVLSEEVISPELGKQQRTQGIISVCLGLAVLIILMSVY 930

Query: 383  YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
            Y   G++A  ++ LN++L  A L  L A LTL  +AGIVL +G+AVD+N+LV ERIREE 
Sbjct: 931  YKFGGVIASGAVILNLLLIWAALQYLDAPLTLTGLAGIVLAMGMAVDANVLVFERIREEY 990

Query: 443  RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
              ++S+  S++ G+ +A+  IFDSN+T ++A+++L     G ++GFA+T+ L I  SMFT
Sbjct: 991  LLSRSLTQSVEAGYKKAFGAIFDSNLTTVLASLLLLVLDTGPIKGFALTLILGIFSSMFT 1050

Query: 503  AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
            A+ + +   +  +     K+ +         I           R W +  S++   C   
Sbjct: 1051 ALFMTKFFFMVWMN----KTQETQLHMMNKFIGIKHDFLKECKRLWMISGSVIALGCVAL 1106

Query: 563  LLFTHGLNYGIDFKGGIQLGVLANRP--VDLSVVRSNLES---------------LQIGD 605
                     G+DFKGG  L +       VD++ VRS L                      
Sbjct: 1107 GFGAWNSVLGMDFKGGYALTLNIADQKSVDVTNVRSKLGDKFKQVGISPRDFRIKTFGSS 1166

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVG 658
               + +  +         +     A    L +V   +++     + +N          V 
Sbjct: 1167 DKIKIYFSQNALTRVQTPERPAMEATDPNLSIVMNLLSDTGIDISSENLKDVQNFWSKVS 1226

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG--- 715
             + S ++ ++  + ++ + + +L+Y+ +RF+W +A  AI  LI D+  T           
Sbjct: 1227 GQFSNKMRQQACIALVGALLIILLYVSLRFEWRYAFSAICALIHDLLATCAVLVATHFFL 1286

Query: 716  --IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
              I+ +L A+ A++T++GYS+N+ ++++DR+R++ +    +     LI+ ++ +TLGR+V
Sbjct: 1287 QKIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFT-PMPILINDALQKTLGRTV 1345

Query: 774  YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             T+      +L +   GG  I +FA  M  GI++   SS++IA P+LLF+     +  
Sbjct: 1346 MTTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERKQ 1403


>gi|319651685|ref|ZP_08005812.1| preprotein translocase D and F [Bacillus sp. 2_A_57_CT2]
 gi|317396752|gb|EFV77463.1| preprotein translocase D and F [Bacillus sp. 2_A_57_CT2]
          Length = 754

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 194/701 (27%), Positives = 329/701 (46%), Gaps = 28/701 (3%)

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++  +  +V    +  + E + +RI+ +G+SE  IQ  G  RI +QL G  D ++ R++L
Sbjct: 48  VTPKDGQKVDKAVLASTAEALDRRINVLGVSEPNIQIEGDKRIRVQLAGVTDQNKAREIL 107

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A +SF  V           G     +     +    K  +S      + + F   T 
Sbjct: 108 STEANLSFRDVNDQLMMD----GSDLAENGAKQTFDENGKPSVS--LKLKSASKFKDVTQ 161

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           K V   + + +           +  +  +   D + L+AP ++Q        I GNFTIE
Sbjct: 162 KIVNMGAPNNLLVIWLDFEEGQDTFQAESAKEDPKYLSAPQVSQVFNQDTVSIVGNFTIE 221

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  L+ +L AGSLP++L+ V   +VGA  G  ++     A + G+ +I ++MI +Y   
Sbjct: 222 EAKTLSDLLNAGSLPVQLDEVYSTSVGAKFGEQAMETTILAGIIGIAIIFIYMIAVYRFP 281

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G +A  ++   + L L +   +   LTLP IA ++LG+G+AVD+NI+  ERIREE +  +
Sbjct: 282 GFIATITLSFYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIREEIKVGR 341

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           ++  +   G   + STIFD+NIT ++A  VLF +G  +V+GFA  + +SIL S  TA+  
Sbjct: 342 TIKSAFQAGEKNSLSTIFDANITTILAAAVLFMYGTSSVKGFATMLIISILASFITAVYG 401

Query: 507 VRAMMIFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGIS 553
            R +M   +  K +                         L        F+  R     +S
Sbjct: 402 TRLLMGLWVHSKALNKKPGWFGVKKSEIKNIAENYDTLDLPTKFDKFDFVGNRKKFFILS 461

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +     I ++    LN GIDF  G ++   A+ P+     ++ L +L I          
Sbjct: 462 AVLIAVGIIVVSIFRLNLGIDFVSGTRIEQQASEPITKEKFQAELSALGIETDDIVISGD 521

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            K   V              V     ++  +        N   V P + +EL +  +  +
Sbjct: 522 NKEIGVARLKDVLTKDEIAEVKTHFHEEFGQG------PNVSTVSPTVGKELAKNALKAL 575

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I+++ ++IY+ IRF+   A+ A+  L+ D    +  F+   +E ++T +AAVLT++GYS
Sbjct: 576 AIASVGIIIYVTIRFEIKMAIPAVLALLHDAFFIIAVFSFTRLEVDITFIAAVLTVVGYS 635

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDL---IDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V +DRMR+NM+      SF D+   ++KS+ +TLGRSV T +    +V+ + V+G
Sbjct: 636 INDTIVTFDRMRENMQKKKKLKSFEDIADVVNKSLRQTLGRSVNTVLTVVFTVVALLVFG 695

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+  +  G++    SSIF+AA I         K  
Sbjct: 696 SESIRNFSFALLIGLIAGTYSSIFLAAQIWAVWKGKELKEK 736



 Score = 99.0 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 63/150 (42%), Gaps = 4/150 (2%)

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           Y+   +++     A  TL   I   L  F        L  +AA++  +G +V+  ++ Y+
Sbjct: 273 YMIAVYRFP-GFIATITLSFYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYE 331

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K+     + +         +L      ++   ++   + ++G S +  FA  + 
Sbjct: 332 RIREEIKV---GRTIKSAFQAGEKNSLSTIFDANITTILAAAVLFMYGTSSVKGFATMLI 388

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             I+ +  ++++    ++      +A N +
Sbjct: 389 ISILASFITAVYGTRLLMGLWVHSKALNKK 418



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 44/132 (33%), Gaps = 17/132 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           + +  +     ++    L  A  N +                I LGLDL+GG  ++ +V 
Sbjct: 3   KRSRIVAFFLIVVLLGSLAGATTNNIL-------------KNIKLGLDLQGGFEVLYDVT 49

Query: 61  --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
             D        L   ++ L   +   G+   +++   + +I +  A    +    + ++ 
Sbjct: 50  PKDGQKVDKAVLASTAEALDRRINVLGVSEPNIQIEGDKRIRVQLAGVTDQNKAREILST 109

Query: 118 FLQGVNSKLNVD 129
                   +N  
Sbjct: 110 EANLSFRDVNDQ 121


>gi|171915958|ref|ZP_02931428.1| probable protein-export membrane protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 781

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 191/688 (27%), Positives = 339/688 (49%), Gaps = 31/688 (4%)

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLRQLLGTTAKM 212
           +   A++Q++ I+ +R++  G  +      G+ RILIQ+P     +  ++R+ +   A +
Sbjct: 83  LSPAAVQQAIGILEKRLNPDGGKDLLTAPQGTDRILIQMPGVHPDEVGKIRETIQKVAHL 142

Query: 213 SFHKVLPNNSKKGFMFGVRFLRD---------------SDGNQYLVEDKVEISGIHLNGA 257
            F  V P                                +   YLV+ + ++ G H+   
Sbjct: 143 EFRLVHPQGESALAQMKATGQPVIGYTELPGAKDKDGKREVASYLVKSRADLEGEHVVQ- 201

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
            A         V+ +  D  G++ F ++T  +IG+ LA+++DG VL+AP +  AI  G A
Sbjct: 202 -AWPALNPEGWVIHLKLDSAGSKIFADLTSAHIGENLAIIVDGEVLSAPTLRSAITGGNA 260

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           +ISG FT E A  LA+ L    L   + I+EE NV A  G  +I +G        +L+ L
Sbjct: 261 EISGKFTQEEAQELASGL-ENPLKNPMKIIEESNVSAAFGEQTIQQGIQTGWVSTLLVAL 319

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FM++ Y   GL+A   + + ++L    ++L   TLT+P IAGIVL IG+AVD+N+L+ ER
Sbjct: 320 FMLIYYRFAGLIALVGLVVCMLLVFGAMALFNFTLTMPGIAGIVLTIGMAVDANVLIYER 379

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           +REE    +++  +LD  F +A+S IFD+NIT LI+ V+LF+   G V+GFA+T+ + I+
Sbjct: 380 LREEMNAGKTLGAALDAAFEKAFSAIFDANITTLISAVILFYLATGLVKGFAVTLTVGIV 439

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
            ++  A+ + R    + I    +K I +  +            +      +G+ +  +  
Sbjct: 440 GTLLGALIVTRVCFNWFIDANLLKKITVTHIIPEGKYDLLKWSKPFVLGSFGLALLSILV 499

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                         G       +  V A + V+   V   L+   I     Q        
Sbjct: 500 FPIKGTDAIGIDFRGGAIT---RFEVAAGKTVETEGVEKFLKESNIQGAFVQASSNATAN 556

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L+ ++ +  D      +LE                 T+ VG  + +EL  +  +   ++ 
Sbjct: 557 LITVRSEYDDGPKVKEILESKYAGELSGG------QTDRVGSIVGKELATRSAIAYCLAM 610

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           +A+ IY+ I ++  FA+ AI  L  D    +G   LFG + ++  + A+LT+ GYS+ND 
Sbjct: 611 LAIFIYLVIFYELAFAVAAIVALFHDCVIAIGLSVLFGQQLSVIHIGAILTVAGYSINDT 670

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           ++V+DR+R+ ++  T   S RD+++++I+ TL R++ TS+   +S++ +  +GG  +  F
Sbjct: 671 IIVFDRIREMLR--THRGSIRDIMNEAISATLSRTLLTSLTVLMSMVVLFFFGGPSMKEF 728

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYD 825
           A+P+  G+VV   SSI+IA+ ++L+   
Sbjct: 729 ALPIIIGVVVGTYSSIYIASSLVLWYGR 756


>gi|319400963|gb|EFV89182.1| protein-export membrane protein SecD [Staphylococcus epidermidis
           FRI909]
          Length = 763

 Score =  311 bits (796), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 177/697 (25%), Positives = 320/697 (45%), Gaps = 22/697 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G +D ++ R+LL T A 
Sbjct: 54  GDKIDKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++      +    G        +     +                          +  V 
Sbjct: 114 LTIRDAEDHVLMSGSDIKQGSAKQEFKQETNQPTVTFKVKSKDKFKKVTEKISKKRDNVM 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           + + +      ++       +               IN +        +G   +E A  +
Sbjct: 174 VVWLDFEKGDSYKKEAKKQQEGKKPKFISAASVDQPINSSSVEISGGFNGKKGVEEAKQI 233

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AGSLP+ L  +   +VGA  G D++ K   A + G+ LI LFM+  Y   GLVA 
Sbjct: 234 AELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTMFASIVGIALIYLFMLGFYRLPGLVAI 293

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 294 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 353

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM- 510
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R + 
Sbjct: 354 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 413

Query: 511 ------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
                              KK +           L      + F++     + +SIL  I
Sbjct: 414 SLLVSSNLFKKQYWLFGVKKKNRHDINEGKDVHDLKTSYEKLNFVKLAKPLISLSILIVI 473

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + ++    LN GIDF  G +  + +   +  + V   ++S  +     Q         
Sbjct: 474 IGLIIISIFKLNLGIDFSSGTRADIQSKNAITQAQVEKTVKSAGLEPDQIQINGSGNKNA 533

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +        ++   VK +  +            V P I +EL +  +  +I+++I
Sbjct: 534 TVQFKKDLSREEDNKLSAKVKSEFGDN------PQINTVSPLIGQELAKNAVTALILASI 587

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND +
Sbjct: 588 GIIIYVSLRFEWRMGLSSVLALLHDVFIIIAIFSLFRIEVDLTFIAAVLTIVGYSINDTI 647

Query: 739 VVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+      T +    D++++SI +T+ RS+ T +   + V+ + + G   I 
Sbjct: 648 VTFDRVRENLHKVKVITHTDQIDDIVNRSIRQTMTRSINTVLTVVVVVVSILILGAPTIF 707

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +F++ +  G++    SSIFIA P+       + K  +
Sbjct: 708 NFSLALLIGLLSGVFSSIFIAVPLWGMFKKRQFKKTK 744



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 14/121 (11%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65
           + + I  + LL        ++++           ++LGLDL+GG  ++ +VD     D  
Sbjct: 7   IIAFILLVALLFTGMGMTYKNVV---------KNVNLGLDLQGGFEVLFQVDPLNKGDKI 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
               LQ  S  L + +   G+    ++    N+I +  A  + +      ++        
Sbjct: 58  DKKALQATSQTLENRVNVLGVSEPKIQIEDPNRIRVQLAGIKDQAQARKLLSTQANLTIR 117

Query: 125 K 125
            
Sbjct: 118 D 118


>gi|228999199|ref|ZP_04158780.1| Protein-export membrane protein SecDF [Bacillus mycoides Rock3-17]
 gi|229006746|ref|ZP_04164380.1| Protein-export membrane protein SecDF [Bacillus mycoides Rock1-4]
 gi|228754607|gb|EEM04018.1| Protein-export membrane protein SecDF [Bacillus mycoides Rock1-4]
 gi|228760544|gb|EEM09509.1| Protein-export membrane protein SecDF [Bacillus mycoides Rock3-17]
          Length = 753

 Score =  311 bits (795), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 181/690 (26%), Positives = 328/690 (47%), Gaps = 24/690 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A+  ++  +  R++ +G+SE  IQ  G  RI +QL G +D  + R++L T AK
Sbjct: 55  GDKIDHDALVSTVGALENRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKAREILSTQAK 114

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + +  +Q      + +       +            + 
Sbjct: 115 LTFRDVNDNLLMDGTDLKGGGAKQTFDDQGRPSVGLTLKSADKFRSVTEKILSMKPDNLM 174

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           + + +    +           P  +                    +   GNFT+E+A  L
Sbjct: 175 VIWLDFEEGKDSYKAEAAKPNPKFLSAATVNQVFNQA------EVSITGGNFTVESAKQL 228

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +++L AG+LP+ L  +   +VGA  G  ++ +   A   G+ +I LFM+V Y   GLVA 
Sbjct: 229 SSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLPGLVAV 288

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             + L + +TL + + + A LTLP IA +VLG+G+AVD+NI+  ER++EE R  +S+  +
Sbjct: 289 IMLGLYIFVTLLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSA 348

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TI D+N+T + A  VLF +G  +VRGFA ++ +SIL+   T +   R ++
Sbjct: 349 YRAGNHRSLATILDANVTTIAAAGVLFAYGTSSVRGFATSLIVSILVGFLTNVFGTRFLL 408

Query: 512 IFIIRYKKM-KSIDINPLSRFFLIP----------DCIAIQFMRARFWGVGISILFSICS 560
             +++ +   K +    + +  +IP              I F+         SI+  I  
Sbjct: 409 GLLVKSRYFDKKLSYFGVKQKEIIPLSKGVEHAPTRFDRINFVNIGHKFFLFSIVVVIAG 468

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             +L    +N GIDF  G ++ + + + + +  V+ +L  L+I            +    
Sbjct: 469 AIILPIFKMNLGIDFASGTRMDLQSKQAISVDQVQKDLHELKIDVKKEDIVPTGDDNKGF 528

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G                       T  N   V P I +E+ R   + V+I++  +
Sbjct: 529 AVRTLGVLSKDEIAKAKTFFH----DKYGTDPNVSTVSPTIGKEIARNAFIAVLIASAVI 584

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++Y+ IRF++ +AL A+  L+ D    +  F++F +E +LT +AAVLT+IGYS+ND +V 
Sbjct: 585 ILYVSIRFRFTYALSAVLALLHDAFVMIVVFSVFRLEVDLTFIAAVLTIIGYSINDSIVT 644

Query: 741 YDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +DR R+  K            ++++ SI +T+GRS+ T +     V+ + ++G   + +F
Sbjct: 645 FDRNRELYKQKKRIRDLKDLEEIVNSSIRQTIGRSINTVLTVLFPVIALLIFGSESLRNF 704

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++ +  G+VV   SS+F+A+ I L + + R
Sbjct: 705 SLALMVGLVVGTYSSVFVASQIWLMLENRR 734



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 80/186 (43%), Gaps = 4/186 (2%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                 +  VG K  ++ + + I    I    + +++ + ++    L A+  L L I  T
Sbjct: 240 DLKEMYSTSVGAKFGQQALEQTIFASAIGIAIIFLFMLVFYRLP-GLVAVIMLGLYIFVT 298

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L  F        L  +AA++  +G +V+  ++ Y+R+++ +++  + +S     +     
Sbjct: 299 LLVFNWMHAVLTLPGIAALVLGVGIAVDANIITYERLKEELRIGKSMMSAYRAGNH---R 355

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +L   +  ++    +   +  +G S +  FA  +   I+V   +++F    +L  +   R
Sbjct: 356 SLATILDANVTTIAAAGVLFAYGTSSVRGFATSLIVSILVGFLTNVFGTRFLLGLLVKSR 415

Query: 828 AKNARI 833
             + ++
Sbjct: 416 YFDKKL 421



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 87/277 (31%), Gaps = 22/277 (7%)

Query: 1   MRNNPWLVILYSMICCI--GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           M      ++ + +I  +  G++ A    +                ISLGLDLRGG  ++ 
Sbjct: 1   MAKRGTRIVAFFLIVLLIGGIIGATGKNIT-------------KGISLGLDLRGGFEILY 47

Query: 59  EVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIAD 113
           EV      D   +  L      L + +   G+   +++    ++I +  A  + ++   +
Sbjct: 48  EVKPAKKGDKIDHDALVSTVGALENRVNVLGVSEPNIQIEGKDRIRVQLAGVKDQQKARE 107

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            ++   +     +N +   +                +     +   ++ + +        
Sbjct: 108 ILSTQAKLTFRDVNDNLLMDGTDLKGGGAK--QTFDDQGRPSVGLTLKSADKFRSVTEKI 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           + +    +  +       +   + + ++      + A ++        S  G  F V   
Sbjct: 166 LSMKPDNLMVIWLDFEEGKDSYKAEAAKPNPKFLSAATVNQVFNQAEVSITGGNFTVESA 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           +            V++  ++     A F  +  +  +
Sbjct: 226 KQLSSLLNAGALPVDLKEMYSTSVGAKFGQQALEQTI 262


>gi|62184819|ref|YP_219604.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila
            abortus S26/3]
 gi|62147886|emb|CAH63633.1| putative protein export protein [Chlamydophila abortus S26/3]
          Length = 1404

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 181/835 (21%), Positives = 338/835 (40%), Gaps = 51/835 (6%)

Query: 41   KNRISLGLDLRGGSHLVLEV---DEDDFVNGF-LQMYSDELRSFLKKEGIGVFSMRQIQN 96
             + + LG+D  GG  + L           +   +   SDEL + L + G+    +R+  +
Sbjct: 576  DSVLRLGIDFIGGKQIRLAFKDHQGKQLTDKEGILKVSDELYARLNRLGVSEVEIRREGD 635

Query: 97   KITLSFADSRFK--ENIADKVTLFLQGVNSKL-NVDPKKNLLVTTTEKEISIVLSQNNID 153
             + LS   S     E I     +    VN K       +  +    +       SQ    
Sbjct: 636  NVHLSVPGSTKISSEEILGTSQMTFHVVNEKFSPYSALRYEVQRFLDYLWFTAQSQEATS 695

Query: 154  QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
                + +   +           + E+  +         ++  E   S L       A   
Sbjct: 696  PEAVNKLASDIFNNPDSRLPSSVQEAVAKLQQEGLAFPKMDNEIASSHLDTTYSMIAIEK 755

Query: 214  F--------HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                       V  N +  G          + G  Y++   V+ +GI       +     
Sbjct: 756  DVEGKANPLMIVFRNYALDGASLKNIRPEFAVGEGYILNFSVKDTGIAQKAHDVSPRESF 815

Query: 266  HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            H         + G          +       V+    + +  +  A    +A +SG F+ 
Sbjct: 816  HAWTSTYC--QEGINGTANGQHSSGRGWRMAVVLDGYVVSDPVLNAPLKDQASVSGKFSH 873

Query: 326  ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                 LA  L++GS+     ++ E  +  +LG     +G  ++  GL ++++ M V Y  
Sbjct: 874  REVHRLATDLKSGSMSFVPEVLSEEVISPELGKQQRTQGIISVCLGLAVLIILMSVYYKF 933

Query: 386  WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             G++A  ++ LN++L  A L  L A LTL  +AGIVL +G+AVD+N+LV ERIREE   +
Sbjct: 934  GGVIASGAVILNLLLIWAALQYLDAPLTLTGLAGIVLAMGMAVDANVLVFERIREEYLLS 993

Query: 446  QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            +S+  S++ G+ +A+  IFDSN+T ++A+++L     G ++GFA+T+ L I  SMFTA+ 
Sbjct: 994  RSLTQSVEAGYKKAFGAIFDSNLTTVLASLLLLVLDTGPIKGFALTLILGIFSSMFTALF 1053

Query: 506  IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
            + +   +  +     K+ +         I           R W V  S++   C      
Sbjct: 1054 MTKFFFMVWMN----KTQETQLHMMNKFIGIKHDFLKECKRLWMVSGSVIALGCVALGFG 1109

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLS-----------------VVRSNLESLQIGDISF 608
                  G+DFKGG  L +       +                    R             
Sbjct: 1110 AWNSVVGMDFKGGYALTLNMADQTSVDVTKFRSTLGDKFKQVGISPRDFRIKTFGSSDKI 1169

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGPKI 661
            + +  +         +   +      L +V   +++     + ++          V  + 
Sbjct: 1170 KIYFSQNALTRVQTPERPATDTADPNLSIVMHILSDTGIDISSESLKDVQNFWFKVSGQF 1229

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG-----I 716
            S ++ ++  + ++ +   +L+Y+ +RF+W +A  AI  LI D+  T             I
Sbjct: 1230 SNKMRQQAFIALMGALCIILLYVSLRFEWRYAFSAICALIHDLLATCAVLVATHFFLQKI 1289

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + +L AV A++T++GYS+N+ ++++DR+R++ +    +     LI+ ++ +TLGR+V T+
Sbjct: 1290 QIDLQAVGALMTVLGYSLNNTLIIFDRIREDRQEKLFT-PMPILINDALQKTLGRTVMTT 1348

Query: 777  MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  +L +   GG  I +FA  M  GI++   SS++IA P+LLF+     +  
Sbjct: 1349 ATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERKQ 1403


>gi|73662431|ref|YP_301212.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
 gi|72494946|dbj|BAE18267.1| protein-export membrane protein SecDF [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 758

 Score =  310 bits (794), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 188/698 (26%), Positives = 326/698 (46%), Gaps = 31/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ   ++RI +QL G ++ S+ R +L + A 
Sbjct: 54  GDKIDDKAVKATAKTLENRVNVLGVSEPKIQVEDNNRIRVQLAGVKNQSQARDILSSQAN 113

Query: 212 MSFHKVLPNNSKKG--FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++      N    G     G                            T     K    +
Sbjct: 114 LTIRDADDNVKLTGKDIQQGSAKQEFKQNTNQPAVTFKLKDSDKFKKVTEEISKKDENVM 173

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     E G     E+ + +     A  +D        IN          +G   +E A 
Sbjct: 174 VVWLDHEKGDTYHKEMDKKDPKYVSAASVD------KPINSDSVEISGGFNGEEGVEKAK 227

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L +GSLP+ L  +   +VGA  G D++ K   A   G+ +I LFM+  Y   GLV
Sbjct: 228 QIADLLNSGSLPVDLKEIYSNSVGAQFGQDALDKTVLAAAIGIAVIYLFMLGFYRLPGLV 287

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E +  +++ 
Sbjct: 288 AVIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELKIGRTLK 347

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TI D+ +T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 348 QAYKKANKSSFLTIVDAQLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRW 407

Query: 510 MMIFIIRYKKMKSIDI-------------NPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           ++  +I     K  +                     L      I FM+     +G+S+L 
Sbjct: 408 LLSLLISSNFFKKSNWLFGVSKKNIHNANEEKEIHDLKTPYERIDFMKLAKPLLGLSVLI 467

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +    +LF   LN GIDF  G ++   +N  VD + V + LES           + +KN
Sbjct: 468 IVVGAIILFIFRLNLGIDFTSGTRVDFESNNKVDENKVTNTLESKGFKPDQVSLGENDKN 527

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             V+ ++             +                   V P I +EL +  ++ +I +
Sbjct: 528 ATVQFKHDLSKDEVSKIQDTV-------DQSFGNKPTVNTVSPVIGQELAKNAMLALIYA 580

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           AI ++IYI  RF+W   L ++  L+ D    +  F+LF IE ++T +AAVLT+IGYS+ND
Sbjct: 581 AIGIIIYITFRFEWRMGLSSVLALLHDAFMIVAVFSLFRIEIDITFIAAVLTIIGYSIND 640

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N+      T +    D++++SI +T+ RS+ T +   I V+ + ++G   
Sbjct: 641 TIVTFDRVRENLHKVKVITKNEQIDDIVNRSIRQTMTRSINTVLTVLIVVIALLIFGAPS 700

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F++ +  G++    SS+FIA P+   +   + K +
Sbjct: 701 IFNFSLALLIGLISGVFSSVFIAVPLWGIMKKRQLKKS 738



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 81/747 (10%), Positives = 202/747 (27%), Gaps = 50/747 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +   ++ + ++  +  L A      ++++           ++LGLDL+GG  ++ +V
Sbjct: 1   MKKSS-RIVAFILLVVL--LFAGMGLTYKNVV---------KDVNLGLDLQGGFEVLYQV 48

Query: 61  DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
           D     D   +  ++  +  L + +   G+    ++ +  N+I +  A  + +    D +
Sbjct: 49  DPLQKGDKIDDKAVKATAKTLENRVNVLGVSEPKIQVEDNNRIRVQLAGVKNQSQARDIL 108

Query: 116 TLFLQGVNSKLNVDPKKNL--LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +          + + K     +   + K+     +            ++  ++  +   +
Sbjct: 109 SSQANLTIRDADDNVKLTGKDIQQGSAKQEFKQNTNQPAVTFKLKDSDKFKKVTEEISKK 168

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
                             +   ++DP  +     +  K      +  +       GV   
Sbjct: 169 DENVMVVWLDHEKGDTYHKEMDKKDPKYVSAA--SVDKPINSDSVEISGGFNGEEGVEKA 226

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG-------ARRFFEVT 286
           +            V++  I+ N   A F        V  +   +                
Sbjct: 227 KQIADLLNSGSLPVDLKEIYSNSVGAQFGQDALDKTVLAAAIGIAVIYLFMLGFYRLPGL 286

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
              I     + L             +P   A + G      A I+        L I   +
Sbjct: 287 VAVIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELKIGRTL 346

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            +           +I       V    ++  F       +  +    I +  +  + L  
Sbjct: 347 KQAYKKANKSSFLTIVDAQLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSR 406

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            L + L   +       +      NI      +E +                A   +  S
Sbjct: 407 WLLSLLISSNFFKKSNWLFGVSKKNIHNANEEKEIHDLKTPYER--IDFMKLAKPLLGLS 464

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSI----------LISMFTAISIVRAMMIFIIR 516
            +  ++  ++LF F       F     +            + +   +       +     
Sbjct: 465 VLIIVVGAIILFIFRLNLGIDFTSGTRVDFESNNKVDENKVTNTLESKGFKPDQVSLGEN 524

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
            K       + LS+  +      +         V          +               
Sbjct: 525 DKNATVQFKHDLSKDEVSKIQDTVDQSFGNKPTVNTVSPVIGQELAK-NAMLALIYAAIG 583

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
             I +       + LS V + L    +    F  F  E +             +    + 
Sbjct: 584 IIIYITFRFEWRMGLSSVLALLHDAFMIVAVFSLFRIEIDITFIAAVLTIIGYSINDTIV 643

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIR------KGIVGVIISAIAMLIYIW---IR 687
              +    +  +  I   E +   ++R + +        ++ V+I  IA+LI+       
Sbjct: 644 TFDRVRENLHKVKVITKNEQIDDIVNRSIRQTMTRSINTVLTVLIVVIALLIFGAPSIFN 703

Query: 688 FKWYFALGAITTLILDITKTLGFFALF 714
           F     +G I+ +   +   +  + + 
Sbjct: 704 FSLALLIGLISGVFSSVFIAVPLWGIM 730


>gi|331083065|ref|ZP_08332182.1| hypothetical protein HMPREF0992_01106 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330405067|gb|EGG84604.1| hypothetical protein HMPREF0992_01106 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 745

 Score =  310 bits (793), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 191/719 (26%), Positives = 328/719 (45%), Gaps = 11/719 (1%)

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                    KN+           +  + + +      +  ++  +++R++     E+ + 
Sbjct: 28  FGPTGTGAAKNIKTGLDLSGGVSITYEASKESPTEDEMADTIYKLQKRVENYST-EAQVY 86

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
           + G +RI++++PG +D +++ + LG    + F K   +   + +                
Sbjct: 87  KEGENRIIVEIPGAKDANKILEELGKPGSLYFIKHKDSAGGENYTLNTETGEYELAKTIE 146

Query: 243 ---VEDKVEISGIHLNGATANFDPK---THKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               +  + ++G  +  A A         +  VV +SF + G  +F   T++ +      
Sbjct: 147 EIEADGGIVLTGTDIKDAKAAVAQDDLKNNVNVVSLSFTKEGTDKFAAATKEAVEAGNDT 206

Query: 297 ---VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                DG  ++ P + Q I  G+AQI G      A  LA+ +R G L ++L+ +    V 
Sbjct: 207 IGIYYDGAFVSVPSVRQEIKDGQAQIDGMKDAAEAENLASTIRIGGLKLELSELRSSVVA 266

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A LG  +I     A   GL LI+LFMI +Y   GLV+  ++ + V L L  L+    TLT
Sbjct: 267 AQLGEKAISTSLVAAAIGLALIILFMIFVYRIPGLVSGIALIIYVCLDLIALNAFDLTLT 326

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L  IAGI+L IG+AVD+N+++  RI+EE    +SV  +L  GF +A+S IFD NIT LIA
Sbjct: 327 LQGIAGIILSIGMAVDANVIIYARIQEEIASGKSVRTALQNGFKKAFSAIFDGNITTLIA 386

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             VL + G G V+GFA T+ L I++SMFTA+ + + +M  +                   
Sbjct: 387 AFVLNWLGSGTVKGFAQTLALGIVLSMFTALVVSKYLMYAVYAVGVRNEKFYGKRKERKP 446

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           IP     +   A    + +    S+          L Y ++FKGG    V  ++ + ++ 
Sbjct: 447 IPFLQKRKVFFAVSLILILCAPVSMLIFKGTTGESLKYSLEFKGGTSTNVEFDKDMSIAE 506

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   L  L       +N    K            ++   +  ++    I           
Sbjct: 507 IDEKLTPLVEEVTGDKNVQATKVVGNNQVIIKTRTLNVEQREKLETALIDNFGVAQEDIT 566

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
           +E +   +S E+    +  VI++ + ML+YIW RFK   FA  A+  L+ D+   L F+A
Sbjct: 567 SESISSTVSNEMRADAVKAVIVATVLMLLYIWFRFKDIRFASSAVIALLHDVLVVLAFYA 626

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           +  +    T +A +LT++GYS+N  +V++DR+R+N+           L++ SI +TL RS
Sbjct: 627 VARVSVGNTFIACMLTIVGYSINATIVIFDRIRENLASAGKKTDLETLVNASITQTLTRS 686

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +YTS+  FI V  + + G S I  FA+P+  GIV    SS+ I   +   +     K  
Sbjct: 687 IYTSLTTFIMVFLLFIMGVSSIREFALPLMVGIVCGGYSSVCITGALWYVMKKKFKKQN 745



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 85/218 (38%), Gaps = 4/218 (1%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +          G   A          +I  +    +   + +V  ++  + I   +V   
Sbjct: 223 QEIKDGQAQIDGMKDAAEAENLASTIRIGGLKLELSELRSSVVAAQLGEKAISTSLVAAA 282

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    +++++   ++    L +   LI+ +   L     F +   L  +A ++  IG +V
Sbjct: 283 IGLALIILFMIFVYRIP-GLVSGIALIIYVCLDLIALNAFDLTLTLQGIAGIILSIGMAV 341

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++Y R+++ +    +  S R  +     +        ++   I+   +   G   +
Sbjct: 342 DANVIIYARIQEEIA---SGKSVRTALQNGFKKAFSAIFDGNITTLIAAFVLNWLGSGTV 398

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             FA  +A GIV++  +++ ++  ++  +Y    +N +
Sbjct: 399 KGFAQTLALGIVLSMFTALVVSKYLMYAVYAVGVRNEK 436



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 9/119 (7%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           M+ N    +++L ++I    +      F P               I  GLDL GG  +  
Sbjct: 1   MKKNRGILVLVLTAIITGFLIFTTAVGFGPTGTGAA-------KNIKTGLDLSGGVSITY 53

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           E  ++      +     +L+  ++         ++ +N+I +    ++    I +++  
Sbjct: 54  EASKESPTEDEMADTIYKLQKRVENYSTEAQVYKEGENRIIVEIPGAKDANKILEELGK 112


>gi|329942498|ref|ZP_08291308.1| protein-export membrane protein SecD [Chlamydophila psittaci Cal10]
 gi|328815408|gb|EGF85396.1| protein-export membrane protein SecD [Chlamydophila psittaci Cal10]
          Length = 1131

 Score =  310 bits (792), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 186/835 (22%), Positives = 345/835 (41%), Gaps = 51/835 (6%)

Query: 41   KNRISLGLDLRGGSHLVLEV---DEDDFVNGF-LQMYSDELRSFLKKEGIGVFSMRQIQN 96
             + + LG+D  GG  + L           +   +   SDEL + L + G+    +R+  +
Sbjct: 303  DSVLRLGIDFIGGKQIRLAFKDHQGKQLTDKEGILKVSDELYARLNRLGVSEVEIRREGD 362

Query: 97   KITLSFADSRFK--ENIADKVTLFLQGVNSKL-NVDPKKNLLVTTTEKEISIVLSQNNID 153
             + LS   S     E I     +    VN K       +  +    +       SQ+   
Sbjct: 363  NVHLSVPGSTKISSEEILGTSQMTFHVVNEKFSPYSALRYEVQRFLDYLWFTAQSQDATS 422

Query: 154  QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
                + +   +           + E+  +          +  E   S L       A   
Sbjct: 423  PEAVNKLASYIFNNPDSRLPSSVQEAVAKLQQEGLAFPNMDSEISSSHLDTTYSMIAIEK 482

Query: 214  F--------HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                       V  N +  G          + G  Y++   V+ +GI       +     
Sbjct: 483  DVEGKANPLMIVFRNYALDGASLKNIRPEFAVGEGYILNFSVKDTGIAQKAYDVSPRESF 542

Query: 266  HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            H         + G          +       V+    + +  +  A    +A +SG F+ 
Sbjct: 543  HAWTSTYC--QEGISGTENGQYSSGRGWRMAVVLDGYVVSDPVLNAPLKDQASVSGKFSH 600

Query: 326  ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                 LA  L++GS+     ++ E  +  +LG     +G  ++  GL ++++ M V Y  
Sbjct: 601  REVNRLATDLKSGSMSFVPEVLSEEVISPELGKQQRTQGIISVCLGLAVLIILMSVYYKF 660

Query: 386  WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             G++A  ++ LN++L  A L  L A LTL  +AGIVL +G+AVD+N+LV ERIREE   +
Sbjct: 661  GGVIASGAVILNLLLIWAALQYLDAPLTLTGLAGIVLAMGMAVDANVLVFERIREEYLLS 720

Query: 446  QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            +S+  S++ G+ +A+  IFDSN+T ++A+++L     G ++GFA+T+ L I  SMFTA+ 
Sbjct: 721  RSLTQSVEAGYKKAFGAIFDSNLTTVLASLLLLVLDTGPIKGFALTLILGIFSSMFTALF 780

Query: 506  IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
            + +   +  +     K+ +         I           R W +  S++   C      
Sbjct: 781  MTKFFFMVWMN----KTQETQLHMMNKFIGIKHDFLKECKRLWMISGSVIALGCVALGFG 836

Query: 566  THGLNYGIDFKGGIQLGVLANRP--VDLSVVRSNLES---------------LQIGDISF 608
                  G+DFKGG  L +       VD++ VRS L                         
Sbjct: 837  AWNSVLGMDFKGGYALTLNIADQKSVDVTNVRSKLGDKFKQVGISPRDFRIKTFGSSDKI 896

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGPKI 661
            + +  +         +     A    L +V   +++     + +N          V  + 
Sbjct: 897  KIYFSQNALTRVQTPERPAMEATDPNLSIVMNLLSDTGIDISSENLKDVQNFWSKVSGQF 956

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG-----I 716
            S ++ ++  + ++ + + +L+Y+ +RF+W +A  AI  LI D+  T             I
Sbjct: 957  SNKMRQQACIALVGALLIILLYVSLRFEWRYAFSAICALIHDLLATCAVLVATHFFLQKI 1016

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + +L A+ A++T++GYS+N+ ++++DR+R++ +    +     LI+ ++ +TLGR+V T+
Sbjct: 1017 QIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQEKLFT-PMPILINDALQKTLGRTVMTT 1075

Query: 777  MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  +L +   GG  I +FA  M  GI++   SS++IA P+LLF+     +  
Sbjct: 1076 ATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERKQ 1130


>gi|260589633|ref|ZP_05855546.1| protein-export membrane protein SecD [Blautia hansenii DSM 20583]
 gi|260539873|gb|EEX20442.1| protein-export membrane protein SecD [Blautia hansenii DSM 20583]
          Length = 745

 Score =  310 bits (792), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 191/719 (26%), Positives = 329/719 (45%), Gaps = 11/719 (1%)

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
               +    KN+           +  + + +      +  ++  +++R++     E+ + 
Sbjct: 28  FGPTSTGAAKNIKTGLDLSGGVSITYEASKESPTEDEMADTIYKLQKRVENYST-EAQVY 86

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
           + G +RI++++PG +D +++ + LG    + F K   +   + +                
Sbjct: 87  KEGENRIIVEIPGAKDANKILEELGKPGSLYFIKHKDSAGGENYTLNTETGEYELAKTIE 146

Query: 243 ---VEDKVEISGIHLNGATANFDPK---THKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               +  + ++G  +  A A         +  VV +SF + G  +F   T++ +      
Sbjct: 147 EIEADGGIVLTGTDIKDAKAAVAQDDLKNNVNVVSLSFTKEGTGKFAAATKEAVEAGNDT 206

Query: 297 ---VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                DG  ++ P + Q I  G+AQI G      A  LA+ +R G L ++L+ +    V 
Sbjct: 207 IGIYYDGAFVSVPSVRQEIKDGQAQIDGMKDAAEAENLASTIRIGGLKLELSELRSSVVA 266

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A LG  +I     A   GL LI+LFMI +Y   GLV+  ++ + V L L  L+    TLT
Sbjct: 267 AQLGEKAISTSLVAAAIGLALIILFMIFVYRIPGLVSGIALIIYVCLDLIALNAFDLTLT 326

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L  IAGI+L IG+AVD+N+++  RI+EE    +SV  +L  GF +A+S IFD NIT LIA
Sbjct: 327 LQGIAGIILSIGMAVDANVIIYARIQEEIASGKSVRTALQNGFKKAFSAIFDGNITTLIA 386

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             VL + G G V+GFA T+ L I++SMFTA+ + + +M  +                   
Sbjct: 387 AFVLNWLGSGTVKGFAQTLALGIVLSMFTALVVSKYLMYAVYAVGVRNEKFYGKRKERKP 446

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           IP     +   A    + +    S+          L Y ++FKGG    V  ++ + ++ 
Sbjct: 447 IPFLQKRKVFFAVSLILILCAPVSMLIFKGTTGESLKYSLEFKGGTSTNVEFDKDMSIAE 506

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   L  L       +N    K            ++   +  ++    I           
Sbjct: 507 IDEKLTPLVEEVTGDKNVQATKVVGNNQVIIKTRTLNVEQREKLETALIDNFGVAQEDIT 566

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
           +E +   +S E+    +  VI++ + ML+YIW RFK   FA  A+  L+ D+   L F+A
Sbjct: 567 SESISSTVSNEMRADAVKAVIVATVLMLLYIWFRFKDIRFASSAVIALLHDVLVVLAFYA 626

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           +  +    T +A +LT++GYS+N  +V++DR+R+N+           L++ SI +TL RS
Sbjct: 627 VARVSVGNTFIACMLTIVGYSINATIVIFDRIRENLASAGKKTDLETLVNASITQTLTRS 686

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +YTS+  FI V  + + G S I  FA+P+  GIV    SS+ I   +   +     K  
Sbjct: 687 IYTSLTTFIMVFLLFIMGVSSIREFALPLMVGIVCGGYSSVCITGALWYVMKKKFKKQN 745



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 85/218 (38%), Gaps = 4/218 (1%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +          G   A          +I  +    +   + +V  ++  + I   +V   
Sbjct: 223 QEIKDGQAQIDGMKDAAEAENLASTIRIGGLKLELSELRSSVVAAQLGEKAISTSLVAAA 282

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    +++++   ++    L +   LI+ +   L     F +   L  +A ++  IG +V
Sbjct: 283 IGLALIILFMIFVYRIP-GLVSGIALIIYVCLDLIALNAFDLTLTLQGIAGIILSIGMAV 341

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++Y R+++ +    +  S R  +     +        ++   I+   +   G   +
Sbjct: 342 DANVIIYARIQEEIA---SGKSVRTALQNGFKKAFSAIFDGNITTLIAAFVLNWLGSGTV 398

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             FA  +A GIV++  +++ ++  ++  +Y    +N +
Sbjct: 399 KGFAQTLALGIVLSMFTALVVSKYLMYAVYAVGVRNEK 436



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/119 (15%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           M+ N    +++L ++I    +      F P S             I  GLDL GG  +  
Sbjct: 1   MKKNRGILVLVLTAIITGFLIFTTAVGFGPTSTGAA-------KNIKTGLDLSGGVSITY 53

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           E  ++      +     +L+  ++         ++ +N+I +    ++    I +++  
Sbjct: 54  EASKESPTEDEMADTIYKLQKRVENYSTEAQVYKEGENRIIVEIPGAKDANKILEELGK 112


>gi|225164351|ref|ZP_03726616.1| protein-export membrane protein SecD [Opitutaceae bacterium TAV2]
 gi|224801031|gb|EEG19362.1| protein-export membrane protein SecD [Opitutaceae bacterium TAV2]
          Length = 873

 Score =  310 bits (792), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 208/855 (24%), Positives = 394/855 (46%), Gaps = 51/855 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++ N W +IL   I         P    +        A  +              ++++ 
Sbjct: 24  LKQNLWKLILSVAIAGWAAWTLFPLKDRKFETYVQTEATKETE------KAAAFRVLVDT 77

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFS----MRQIQNKITLSFADSRFKENIADKVT 116
                       +   LRS   ++ I +      +R   + + +   ++   +++  +  
Sbjct: 78  AIKRHAEHQSPSFFSALRSVANEQKIDLSQYFPGIRLESSLVNIEKRNNILLDHLLKESK 137

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L +D K  +  T    E ++  +  +        + +++EI+  RI+ +G+
Sbjct: 138 SKLQ-----LGLDLKGGVAFTLEVDESALKQTAES---ERGSKLSKAIEILDTRINGLGV 189

Query: 177 SESTIQRLGSHRILIQLPGE--QDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-------- 226
           +E  I+ +G  RI +QL G   +D   +   +   A + F  V P  +            
Sbjct: 190 TEPIIRAVGDRRIEVQLAGVNTRDNPEVVDSVKKPALLEFRTVHPTLTPGPGVETPVGYE 249

Query: 227 --MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
                          +  V+ + +++G  ++ A A  D    +  + ++F++ G++RF  
Sbjct: 250 ILPLEHDDRGKLQIEEVFVKQRPDMTGDGVSNAAAVIDEYG-RFQIALNFNDAGSKRFAA 308

Query: 285 VTRDNIGKPLAVVL--------DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
           VTR+                  DG++ +AP + + I  G+A ISG+FT   A  LA +L 
Sbjct: 309 VTREIAANGQRSGRLGRLAIVLDGKLYSAPTVKEEISGGRASISGSFTQRQAIELANVLN 368

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
              L + + + E+  VG  L  D+I  G  A + G+VL+  FMI  Y   G+VA FS+  
Sbjct: 369 -NPLDLPMQVKEQYEVGPSLAQDAIDSGVRASIIGVVLVAAFMITFYTIGGVVAIFSLAF 427

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N+++    ++ LGATLTLP +AGIVL IG+AVD+NIL+ ER+REE +  +++  +   GF
Sbjct: 428 NILIIFGTMASLGATLTLPGLAGIVLTIGMAVDANILIFERMREELKVGKTLASANRNGF 487

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            +A STI D++   L+   ++ + G G ++GF +T+ + ++ ++ + +     +M  ++ 
Sbjct: 488 YKALSTILDAHFVQLLICAIMIWLGTGPIKGFGVTLAIGVISTLISVLITAHFVMEVLVD 547

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDF 575
              +K + +        I   I + F++        S L  +  +C++   G N YGIDF
Sbjct: 548 GGIIKRLPMG------RIIKDIHVDFVKYGKAAFIASWLVVLGGLCVIIYKGQNIYGIDF 601

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            GG  +     + +D   +R     +  G++         + L  L+           + 
Sbjct: 602 VGGDVISAKFTQKIDAKEIREVASQIGTGEVVPTYVAALGSGLETLKI-ETGEGKSDELF 660

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
             ++KK  +         T  +G  I  E+ +  ++ ++ S    L+YI  RF++ F +G
Sbjct: 661 TALQKKYPQAGLE--KIGTNHLGASIGAEIKKNALIAILASMAVTLLYIAFRFEFGFGIG 718

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A+ + + DI  T+G F LFG  F+   VAA+L + GYS+N+ VVV+DR+R+ +KL     
Sbjct: 719 AMFSSLHDILMTVGIFVLFGHHFSAPMVAAILAIAGYSINETVVVFDRIREELKLNPNGK 778

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
             RD+++ +I++   R++ TS   F++ L + ++GG V+   A     GI+ +  S+IFI
Sbjct: 779 -LRDIVNDAISKVFARTIMTSTTTFLAALSLFLFGGGVLEDIAFTFLVGILTSTFSAIFI 837

Query: 816 AAPILLFIYDWRAKN 830
           ++ +  + +    KN
Sbjct: 838 SSQVFYWWHKGDRKN 852


>gi|167758793|ref|ZP_02430920.1| hypothetical protein CLOSCI_01135 [Clostridium scindens ATCC 35704]
 gi|167663533|gb|EDS07663.1| hypothetical protein CLOSCI_01135 [Clostridium scindens ATCC 35704]
          Length = 724

 Score =  309 bits (791), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 196/692 (28%), Positives = 333/692 (48%), Gaps = 36/692 (5%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   D      +  ++  +++R++Q    E+++ + G  RI I++PG  D + +   
Sbjct: 51  ITYQVKDDNPTEKEMSDTIYKLQKRVEQYST-EASVYQEGDDRINIEIPGVTDANAILDE 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    + F              G   +  SD      +   +  G              
Sbjct: 110 LGKPGSLEFRTED----------GETVITGSDVKTATAKAGEDDMG-------------N 146

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +  V++S ++ G ++F + T  N+GK ++++ DG  +++P +  AI  G+A I+GNF+ 
Sbjct: 147 KEYSVELSLNKEGTKKFADATEANVGKTISIIYDGEAISSPRVQTAITGGQAYITGNFSY 206

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           + A  LA+ +R G L ++L  +    VGA LG  +I     A   GL ++ +FMI +Y  
Sbjct: 207 DEAENLASTIRIGGLKLELEELRSNVVGAQLGEQAISTSLKAGAIGLAIVFIFMIFVYYL 266

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL +  ++ +   L L +L+    TLTLP IAGI+L IG+AVD+N+++  R+REE  + 
Sbjct: 267 PGLASSLALVIYTELVLLILNAFNVTLTLPGIAGIILSIGMAVDANVIIFARVREEMSRG 326

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +SV  +L  GF +A S I D NIT LIA  VL+F G G V+GFA T+ + I++SMFTA+ 
Sbjct: 327 KSVKNALKTGFQKAMSAIVDGNITTLIAAAVLWFKGSGTVKGFAQTLAIGIIVSMFTALV 386

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           I R ++         K        +     +   I F+  + W   +S       +  + 
Sbjct: 387 ITRMIVYAFYAVGLRKEKLYYRAKK-----ERKTINFLGKKKWFFTVSTAVIAAGLIFMG 441

Query: 566 THG------LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
            +         Y ++F+GG    V  N    +  +   +  +        N   +K    
Sbjct: 442 VNSSKGNGAFAYSLEFEGGTSTNVTFNEDYTIEEIDKEIVPVVEKVTGDHNVQTQKVAGT 501

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                   ++   +  ++ +          +    E +   +S E+ +  +V VI++ I 
Sbjct: 502 NQVIIKTVTLELDQREKLNQAMADNFGVDESKITAENISSTVSNEMRQDAVVAVIVATIF 561

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           ML+YIW RFK   FA  A+T L+ D+   L F+A+  I    T +A +LT++GYS+N  +
Sbjct: 562 MLLYIWFRFKDIRFATSAVTALLHDVLVVLAFYAVARISVGNTFIACMLTIVGYSINATI 621

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V++DR+R+ +   T S    ++++KSI  TL RS+YTS+  FI V  + V G S I  FA
Sbjct: 622 VIFDRIREELHYQTKSTDLAEVVNKSITMTLTRSIYTSLTTFIMVAVLYVMGVSSIREFA 681

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +P+  GIV  A SS+ I   +   +     K 
Sbjct: 682 LPLIVGIVCGAYSSVCITGALWYVMKTKTGKK 713



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 77/181 (42%), Gaps = 4/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +VG ++  + I   +    I    + I++   + +   L +   L++     L    
Sbjct: 229 RSNVVGAQLGEQAISTSLKAGAIGLAIVFIFMIFVY-YLPGLASSLALVIYTELVLLILN 287

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F +   L  +A ++  IG +V+  V+++ R+R+ M   +   S ++ +     + +   
Sbjct: 288 AFNVTLTLPGIAGIILSIGMAVDANVIIFARVREEM---SRGKSVKNALKTGFQKAMSAI 344

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           V  ++   I+   +   G   +  FA  +A GI+V+  +++ I   I+   Y    +  +
Sbjct: 345 VDGNITTLIAAAVLWFKGSGTVKGFAQTLAIGIIVSMFTALVITRMIVYAFYAVGLRKEK 404

Query: 833 I 833
           +
Sbjct: 405 L 405



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 52/156 (33%), Gaps = 2/156 (1%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             I LGLDL GG  +  +V +D+     +     +L+  +++        ++  ++I + 
Sbjct: 37  KNIKLGLDLAGGVSITYQVKDDNPTEKEMSDTIYKLQKRVEQYSTEASVYQEGDDRINIE 96

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                    I D++             D +  +  +  +   +     +  ++  S  + 
Sbjct: 97  IPGVTDANAILDELGKPGSLEFRT--EDGETVITGSDVKTATAKAGEDDMGNKEYSVELS 154

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
            + E  ++  D    +      +      I  P  Q
Sbjct: 155 LNKEGTKKFADATEANVGKTISIIYDGEAISSPRVQ 190


>gi|261878954|ref|ZP_06005381.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
 gi|270334409|gb|EFA45195.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
          Length = 676

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 196/618 (31%), Positives = 330/618 (53%), Gaps = 30/618 (4%)

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +  + G  +  A+  F+  + +P V ++ +  GARR+ E+T+ N+GK +A+VLDG 
Sbjct: 46  TTTGRAPLEGDVVTDASDQFNNMSGQPEVSMTMNSEGARRWAELTKANVGKAIAIVLDGV 105

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V +AP +N  I  G++ ISGNFT+E    LA  L++G +P   +IV+E  VG  LG+ SI
Sbjct: 106 VYSAPRVNGEISGGQSSISGNFTVEDTKDLANTLKSGRMPAPAHIVQEEVVGPTLGAQSI 165

Query: 362 YKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
            +G  + +   VL++++M+ +Y    G +A  ++ +NV  TL +L+   A LT+  IAG+
Sbjct: 166 QQGVVSFIIAFVLLIIYMLAMYNIIPGSIAVGALIINVFFTLGILTSFQAALTMSGIAGM 225

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +G AVD+N+L+ ERI+EE R  + +  ++  G+S A+S IFDSN+T++I  V+L+ F
Sbjct: 226 VLSLGTAVDANVLIYERIKEELRGGKGMKQAISAGYSNAFSAIFDSNLTSIITGVILYVF 285

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G G +RGFA T  + I  S F+A+ + R +  + +   K  ++          +      
Sbjct: 286 GTGPIRGFATTWIIGIACSFFSAVYLTRLVYEYKLNKDKWLNLKFWTGISKN-MMQDTNF 344

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           +FM        ++I  ++  I      GL   IDF GG    +   +  +   VR  L  
Sbjct: 345 KFMSMYKKTFTVAIAAAVVFIGSFVVRGLAQSIDFTGGRNYVIAFEKNTEPEQVREVLVK 404

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI------------------ 642
              G  +     G  N  +R+        + T V + V++ +                  
Sbjct: 405 TFPGATTGALSLGTDNKTIRVSTNYKIESSSTTVDDEVEEMLYNGLKRAGLVTQNSVETF 464

Query: 643 --TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
              ++    +I ++  VGP +++++    I+ V+I+ IA+ +YI +RF+   F++G+   
Sbjct: 465 KNPDVRQGGSIISSSKVGPSVAKDVTYGAIISVLIALIAIFLYILLRFRNVAFSVGSTVA 524

Query: 700 LILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L LD    +G F+L        +E + T + AVLT+IGYS+NDKVVV+DR+R+N+KL+  
Sbjct: 525 LTLDALTVIGLFSLLQGIMPFSLEVDQTFIGAVLTVIGYSINDKVVVFDRIRENLKLHPK 584

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
               + L + SIN+TL R++ TS++  I +L +   GG  I  FA  M  G++    SSI
Sbjct: 585 -QDIQSLFNDSINQTLARTINTSLSTLIVLLCILFLGGKSIQPFAFAMTLGVIFGTLSSI 643

Query: 814 FIAAPILLFIYDWRAKNA 831
           FIA+PI   +   + +N 
Sbjct: 644 FIASPIAYIVMGRKIQNQ 661


>gi|283795988|ref|ZP_06345141.1| putative protein-export membrane protein SecDF [Clostridium sp.
           M62/1]
 gi|291076634|gb|EFE13998.1| putative protein-export membrane protein SecDF [Clostridium sp.
           M62/1]
          Length = 730

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 181/587 (30%), Positives = 289/587 (49%), Gaps = 3/587 (0%)

Query: 244 EDKVEISGIHLNGATANFDPKT--HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           E    ++G  ++ A A     T   + VV ++F E G + F + T + +GKP+ ++ D  
Sbjct: 116 EGTTILTGDQVSAAQAGMVDGTTGKEYVVSLTFTEEGTKAFADATTNGVGKPIYIIYDNE 175

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V++APV+ +AI  G+  I G  + E A  LA+ +R GSL ++L  +    VGA LG  +I
Sbjct: 176 VVSAPVVREAITGGQCTIDGMASFEEAENLASTIRIGSLSLELEELRSNVVGAKLGQQAI 235

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A V G V++ +FMI +Y   GL +  ++ L V L L LL     TLTLP +AGI+
Sbjct: 236 TTSLKAGVVGFVIVAVFMIAVYLIPGLASVIALCLYVGLILILLVSFNVTLTLPGVAGII 295

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+AVD+N+++  RI+EE    +SV  +++ GF +A S I D N+T LIA  VLF+ G
Sbjct: 296 LSIGMAVDANVIIFTRIKEEIGAGKSVKTAIENGFQKALSAIVDGNVTTLIAAAVLFWRG 355

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
            G VRGFA T+ + I++SMFTA+ + R  +  +                    P     +
Sbjct: 356 SGTVRGFASTLAIGIVLSMFTALFVTRFALNAMFAMGIQNPKFYGTKKEKPAKPFLKYRK 415

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
              A       +    +          LNY ++FKGG    V  N  +    + S +  L
Sbjct: 416 ICFALSLAAIAAGFVFMGINKSSTGDILNYSMEFKGGTSTNVTFNEEMSQERIESEVVPL 475

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                   +   ++            ++         K               E +   +
Sbjct: 476 VEEITGDADVQTQRVSGSNEVIIKTRTLNMEEREAFEKAMEDSFGVEKEKITAESISGAV 535

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNL 720
           S+E+ +   V V+I+ I MLIYIW RFK   FA  ++  LI D+   +  +A F      
Sbjct: 536 SQEMKQDAFVAVVIATICMLIYIWFRFKNIRFAASSVLALIHDVLVVIACYAAFKWPVGS 595

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T +A +LT++GYS+N  +V++DR+R+N+K      +  ++++ SI +T  RSV TS+  F
Sbjct: 596 TFIACILTIVGYSINATIVIFDRVRENLKEKRHDQTIEEIVNLSITQTFTRSVNTSLTTF 655

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + VL + + G S I  FA+P+  GIV    SS+ +A  +   +   R
Sbjct: 656 VMVLVLYIMGVSSIREFALPLMVGIVCGTYSSVCLAGSLWFEMNRRR 702



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 30/80 (37%)

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA 103
           I LGLDL GG  +  +  E++     ++    +L+  ++         ++  ++I +   
Sbjct: 33  IKLGLDLAGGVSITYQAKEENPSAEDMKDTIYKLQQRVQNYSTEAEVYQEGNDRINIDIP 92

Query: 104 DSRFKENIADKVTLFLQGVN 123
                  I  ++      + 
Sbjct: 93  GVSDANAILAELGKPGSLIF 112


>gi|46445885|ref|YP_007250.1| putative fusion protein export proteins SecD/SecF [Candidatus
            Protochlamydia amoebophila UWE25]
 gi|46399526|emb|CAF22975.1| putative fusion protein export proteins SecD/SecF [Candidatus
            Protochlamydia amoebophila UWE25]
          Length = 1510

 Score =  308 bits (789), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 202/850 (23%), Positives = 355/850 (41%), Gaps = 68/850 (8%)

Query: 42   NRISLGLDLRGGSHL---VLEVDEDDFV-NGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
              +  GLDL GG  +   +L+ +         L+   +EL + + K G+   ++R   + 
Sbjct: 660  KVLKWGLDLSGGKTVRIGLLDQNGRTVTNPEDLKQAVNELYTRINKMGVAERTIRIENSN 719

Query: 98   ITLSFADSRFKENIAD---------KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            I L F  S+                 V      +N+ L     + L     E  ++    
Sbjct: 720  ILLDFPGSQNLSASELVKASAMYFHIVNEKFGPLNTALAGAVNQFLQDIWNEAVVTNRRD 779

Query: 149  QNNIDQVISHAI---EQSMEIIRQRIDQIGIS--ESTIQRLGSHRILIQLPGEQDPSRLR 203
              +I+++    +   E+S   +R R D   I            +R++ Q   E   +   
Sbjct: 780  IESINEIAWQHLGGDEESTITMRPRTDHAKILYENGLRLANPKNRVVTQAFDESLSTLAM 839

Query: 204  QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
               G +A+       P               ++    Y       ++        +    
Sbjct: 840  FRGGDSAEWDNQ-THPLLVVFHNFALEGSNLENIQPGYDATQGNILTFGIKRSFDSGEHA 898

Query: 264  KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK----AQI 319
                     ++    A      T   +           +L   +I     +        I
Sbjct: 899  SGSPRDNFFNWTSQFAEDKIAGTPKEVYSNGRGWRMAVILNGSIITAPSLNAALRDGGTI 958

Query: 320  SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
            SG F+      LAA L+AGSL     I+ E NV  +LG +   KG  A +  L L+V+ M
Sbjct: 959  SGRFSQREVTQLAADLKAGSLSFTPRILSEENVSPELGREERAKGIVASLVALALVVIAM 1018

Query: 380  IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
            I  Y   G +A  ++ LN+ +   +L  LGA LTLP IAGIVL IG+AVD+N+LV ERIR
Sbjct: 1019 IGYYHFAGFIASCAVLLNIFIMWGVLQNLGAALTLPGIAGIVLTIGMAVDANVLVFERIR 1078

Query: 440  EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
            EE +    +  ++  G+ +A+S I DSNIT +IA ++L  F  G ++GFA+T+ + I+ S
Sbjct: 1079 EEFKVTGRIASAIQAGYRKAFSAIIDSNITTIIAAIILIQFDSGPIKGFAVTLIIGIISS 1138

Query: 500  MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
            MFTA+ + R      ++  + K + +    +           F++     + IS++    
Sbjct: 1139 MFTALFMTRYFFAGWVKKPEHKQLSMAQFLK------ETHFDFLKQAKKAIVISLIVMGI 1192

Query: 560  SICLLFTHGLN-YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ---------------- 602
                L +     +G+DF GG  L +      +    R    +                  
Sbjct: 1193 GTYFLVSERKTIFGMDFTGGYSLTLDVAEKAEKPNYRLEAINAFLDKGASRRDFEVRELS 1252

Query: 603  ----------------IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                                         +       +          L+     + +  
Sbjct: 1253 RPNQLRIQLGTSMDEKGHPFYQMPEINPDSKYAFDYQKDPRLSWVVETLQSHGLDVQQSQ 1312

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
              +  +N  I+  + S  +    I+ +  + IA+LIYI  RF++ FA+GA+  L+ D+  
Sbjct: 1313 LTTLQKNWTIMSGQFSDTMRNNAIIALGAALIAILIYITFRFEFKFAIGAVIGLVHDVII 1372

Query: 707  TLGFFALFGI-----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            TLG  ALF       + +L  V A++T+IGYS+ND ++V+DR+R++MK     +SFR++I
Sbjct: 1373 TLGILALFHAIGFPVQIDLQVVGAIMTIIGYSLNDTIIVFDRIREDMKTL-RRLSFREII 1431

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            + ++N TL R++ TS    + +L + + GG  I +F++ M  G++V   SS+FIA+P++L
Sbjct: 1432 NHALNVTLSRTIMTSGTTLLVLLALVLLGGQSIFAFSLVMTVGVLVGTLSSLFIASPVML 1491

Query: 822  FIYDWRAKNA 831
            + ++   ++ 
Sbjct: 1492 YFHNKEVEHQ 1501


>gi|300934556|ref|ZP_07149812.1| preprotein translocase subunit SecD [Corynebacterium resistens DSM
           45100]
          Length = 1074

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 176/932 (18%), Positives = 331/932 (35%), Gaps = 124/932 (13%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
             +    ++   GL+    N                    LG+DL+GG+ + L       
Sbjct: 22  LALFCLILVTVFGLIFLTGN--------------KSLSPKLGIDLQGGTRITLVPQGAKP 67

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
            +  L      L   +   G+    +R   + I ++       E     +    Q V   
Sbjct: 68  SSEQLDQARRILSDRVNGMGVSGAEVRADGSNIVITVP-GENVEEAR-TLGKTSQLVFRP 125

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR-- 183
           +   P +       E E                A ++  ++++    Q   +     +  
Sbjct: 126 VVQQPAQPDKGVFKEVEAMANRWVEVGALTPDAAQKKLDDLMKFLKQQKVPNAPKELKIT 185

Query: 184 ------------LGSHRILIQLPGEQDPSRLRQLLGTTAK-MSFHKVLPNNSKKGFMFGV 230
                          +R  +      D    +      A+ +   +     +        
Sbjct: 186 AKAPAEGKTSVEQQKNRDKMVKVLLADRQSDKPNKQEAARALLTCEGADKLAGADDPAKP 245

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGAT-------------------ANFDPKTHKPVVD 271
               D+ G   ++     + G                                       
Sbjct: 246 FVTCDTQGQVQVLGPAPVLEGSKPGPDAKYLTGAMIDGNAPITGGLNPQTTQMAISFKFK 305

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQISGNFTIETAGI 330
              +  G   +++  +  + K +A+ LD +VL+APVI +   P   +QI+G+F+ + A  
Sbjct: 306 TGKETPGGETWYKFGQQMLQKQVAITLDSKVLSAPVIQEPTPPGNVSQITGDFSEKEAQD 365

Query: 331 LAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           +A  LR G+LPI               +   LG  S+  G  A   GL+LI L+ +V Y 
Sbjct: 366 VANNLRYGALPISFVGENGEPGGTTTTISPTLGEASLKAGLIAGAVGLLLIALYALVYYR 425

Query: 385 KWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
             G++A  S+  ++ L   L+ LLG     +L L  IAG+++G+G   DS ++  ERI++
Sbjct: 426 GLGIIALVSLLSSLALVYGLIVLLGRWIGYSLDLAGIAGLIIGLGTTADSFVIYFERIKD 485

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E R   +   ++   + RA  TI   N  +L   +VL+F   G V+GFA T+GL+ +  +
Sbjct: 486 EIRDGSTFRSAVPRAWQRARRTIVTGNAVSLFGALVLYFLAIGEVKGFAFTLGLTTVFDL 545

Query: 501 FTAISIVRAMMIFIIRYKKMKSID------------------------------------ 524
             A  +   ++I   R     +                                      
Sbjct: 546 VIAFLVSAPLVILASRRPTFANPRLNGLGSAFRASDAQGASGGKRRRNEKGAVTGDSGET 605

Query: 525 ---------------INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
                           +      +       Q +  R     + +     +I  +   G 
Sbjct: 606 SATKDADQKPAATEKSSMGFFDKMYNGMGGFQIIPKRRKWYTLMVAMLAVAIGAILIRGF 665

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             GIDF+GG ++ +     V  S V    E             G  +  V        S 
Sbjct: 666 TLGIDFQGGTRMAMPPADNVTQSQVEETFEEAIGVRPQSAQTVGSGDSRVIEVTSERLSD 725

Query: 630 AQ-----TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            Q     + + E  + K        +      V     + + ++ ++ + +  + +  YI
Sbjct: 726 DQIRQVRSALFEKFQPKNAAGEVSESAVTDSTVSESWGKSITQRMLLSLGVFLLIVFAYI 785

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            +R +   AL AI T++LD+    G +AL G E +   V  +LT++ +S+ D VVV+D++
Sbjct: 786 TVRLERDMALAAIVTILLDLAVVAGLYALIGFEVSPATVIGLLTILAFSLYDVVVVFDKI 845

Query: 745 RKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSF 797
           R+N      +T  +F +  + ++N+T+ RS+ TS+ + + ++ + V      G   +   
Sbjct: 846 RENTAGLFGSTRSTFDEQANLALNQTIMRSINTSIFSAVPIVSLLVVAVGLMGVGTLKDL 905

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           A+    G++V   +SIF AAP+L  I   + K
Sbjct: 906 ALVQFIGVIVGTFNSIFFAAPLLASIKARQRK 937


>gi|323485628|ref|ZP_08090967.1| translocase subunit secF/protein translocase subunit secD
           [Clostridium symbiosum WAL-14163]
 gi|323401039|gb|EGA93398.1| translocase subunit secF/protein translocase subunit secD
           [Clostridium symbiosum WAL-14163]
          Length = 718

 Score =  308 bits (788), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 174/566 (30%), Positives = 294/566 (51%), Gaps = 1/566 (0%)

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           + VV ++F+E G + F + T   +GKP+ +V DG+ ++AP + + I  G+ +I G  + E
Sbjct: 141 EYVVALTFNEEGTKAFADATTKGVGKPIYIVYDGQPISAPNVKEPITGGQCRIDGMGSFE 200

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LAA +R GSL ++L  +    VGA LG ++I     A   G  ++V+FMI  Y   
Sbjct: 201 EAENLAATIRIGSLSLELEELRSNVVGAKLGQEAISTSLKAGAIGFGIVVVFMIFAYLIP 260

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           GL A  ++ L V L L LL+    TLTLP +AGI+L IG+AVD+N+++  RI+EE    +
Sbjct: 261 GLAASIALCLYVGLILVLLAAFEVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGMGK 320

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           +V  ++  GF++A S I D N+T LIA  VLF+ G G V+GFA T+ + I++SMFTA+ +
Sbjct: 321 TVKSAIKTGFAKALSAIIDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTALFV 380

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
            +  +  +       +          + P     +   A    + ++   ++        
Sbjct: 381 TKFALYCLFEAGLQDAKYYGVKKDTKVRPFLRYRKLCFAVSGVLILAGFAAMGMNSASGG 440

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             LNY ++F+GG    V  N  + L  + S +  +            +K           
Sbjct: 441 SILNYSMEFRGGTSTNVTFNEDMSLDRISSEVVPVVEKITGEAGTQTQKVAGTNEVIIKT 500

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            +++     E+ K  +            + +   IS+E+ +  ++ V+I+ I ML+YIW 
Sbjct: 501 RTLSVDEREELDKALVDTFGVDQEKITADSISGAISKEMKQDAVIAVVIATICMLLYIWF 560

Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           RF    FA  A+  L+ D+   + F+A+F      T +A +LT++GYS+N  +V++DR+R
Sbjct: 561 RFSNITFAASAVLALVHDVLVVVTFYAVFKWSVGSTFIACMLTIVGYSINATIVIFDRIR 620

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +NMKL   + +  D+++ SI++TL RS+ TS+  FI V  + + G S I  FA+P+  GI
Sbjct: 621 ENMKLKKHTQTVEDVVNLSISQTLTRSINTSLTTFIMVFVLFLMGVSSIREFALPLMVGI 680

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           V    SS+ +   +       + + A
Sbjct: 681 VCGTYSSVCLTGSMWYLFNQKKEQKA 706



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 81/180 (45%), Gaps = 4/180 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +VG K+ +E I   +    I    +++++   +     L A   L L +   L   A
Sbjct: 222 RSNVVGAKLGQEAISTSLKAGAIGFGIVVVFMIFAY-LIPGLAASIALCLYVGLILVLLA 280

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F +   L  VA ++  IG +V+  V+++ R+++ + +     + +  I     + L   
Sbjct: 281 AFEVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGM---GKTVKSAIKTGFAKALSAI 337

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+   +   G   +  FA  +A GI+++  +++F+    L  +++   ++A+
Sbjct: 338 IDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTALFVTKFALYCLFEAGLQDAK 397



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 3/165 (1%)

Query: 35  FPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI 94
           +        I LGLDL GG  +  +  E +  +  +     +L+  ++         ++ 
Sbjct: 24  YFGYSTMGAIKLGLDLAGGVSITYQAKEANPSSEDMADTIYKLQQRVQNYSTEAEVYQEG 83

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
            N+I +          I  ++      V   L+ +  + L         + +   ++  +
Sbjct: 84  SNRINVDIPGVSDANAILQELGKPGSLVF--LDSEFNQVLDGKQVSSAKAGM-DDSSGVK 140

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
               A+  + E  +   D           +      I  P  ++P
Sbjct: 141 EYVVALTFNEEGTKAFADATTKGVGKPIYIVYDGQPISAPNVKEP 185


>gi|323691702|ref|ZP_08105963.1| protein-export translocase [Clostridium symbiosum WAL-14673]
 gi|323504246|gb|EGB20047.1| protein-export translocase [Clostridium symbiosum WAL-14673]
          Length = 718

 Score =  308 bits (787), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 174/566 (30%), Positives = 294/566 (51%), Gaps = 1/566 (0%)

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           + VV ++F+E G + F + T   +GKP+ +V DG+ ++AP + + I  G+ +I G  + E
Sbjct: 141 EYVVALTFNEEGTKAFADATTKGVGKPIYIVYDGQPISAPNVKEPITGGQCRIDGMGSFE 200

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LAA +R GSL ++L  +    VGA LG ++I     A   G  ++V+FMI  Y   
Sbjct: 201 EAENLAATIRIGSLSLELEELRSNVVGAKLGQEAISTSLKAGAIGFGIVVVFMIFAYLIP 260

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           GL A  ++ L V L L LL+    TLTLP +AGI+L IG+AVD+N+++  RI+EE    +
Sbjct: 261 GLAASIALCLYVGLILVLLAAFEVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGMGK 320

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           +V  ++  GF++A S I D N+T LIA  VLF+ G G V+GFA T+ + I++SMFTA+ +
Sbjct: 321 TVKSAIKTGFAKALSAIIDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTALFV 380

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
            +  +  +       +          + P     +   A    + ++   ++        
Sbjct: 381 TKFALYCLFEAGLQDAKYYGIKKDTKVRPFLRYRKLCFAVSGVLILAGFAAMGMNSASGG 440

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             LNY ++F+GG    V  N  + L  + S +  +            +K           
Sbjct: 441 SILNYSMEFRGGTSTNVTFNEDMSLDRISSEVVPVVEKITGEAGTQTQKVAGTNEVIIKT 500

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            +++     E+ K  +            + +   IS+E+ +  ++ V+I+ I ML+YIW 
Sbjct: 501 RTLSVDEREELDKALVDTFGVDQEKITADSISGAISKEMKQDAVIAVVIATICMLLYIWF 560

Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           RF    FA  A+  L+ D+   + F+A+F      T +A +LT++GYS+N  +V++DR+R
Sbjct: 561 RFSNITFAASAVLALVHDVLVVVTFYAVFKWSVGSTFIACMLTIVGYSINATIVIFDRIR 620

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +NMKL   + +  D+++ SI++TL RS+ TS+  FI V  + + G S I  FA+P+  GI
Sbjct: 621 ENMKLKKHTQTVEDVVNLSISQTLTRSINTSLTTFIMVFVLFLMGVSSIREFALPLMVGI 680

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           V    SS+ +   +       + + A
Sbjct: 681 VCGTYSSVCLTGSMWYLFNQKKEQKA 706



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 81/180 (45%), Gaps = 4/180 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +VG K+ +E I   +    I    +++++   +     L A   L L +   L   A
Sbjct: 222 RSNVVGAKLGQEAISTSLKAGAIGFGIVVVFMIFAY-LIPGLAASIALCLYVGLILVLLA 280

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F +   L  VA ++  IG +V+  V+++ R+++ + +     + +  I     + L   
Sbjct: 281 AFEVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGM---GKTVKSAIKTGFAKALSAI 337

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+   +   G   +  FA  +A GI+++  +++F+    L  +++   ++A+
Sbjct: 338 IDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTALFVTKFALYCLFEAGLQDAK 397



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 52/165 (31%), Gaps = 3/165 (1%)

Query: 35  FPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI 94
           +        I LGLDL GG  +  +  E +  +  +     +L+  ++         ++ 
Sbjct: 24  YFGYSTMGAIKLGLDLAGGVSITYQAKEANPSSEDMADTIYKLQQRVQNYSTEAEVYQEG 83

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
            N+I +          I  ++      V   L+ +  + L         + +   ++  +
Sbjct: 84  SNRINVDIPGVSDANAILQELGKPGSLVF--LDSEFNQVLDGKQVSSAKAGM-DDSSGVK 140

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
               A+  + E  +   D           +      I  P  ++P
Sbjct: 141 EYVVALTFNEEGTKAFADATTKGVGKPIYIVYDGQPISAPNVKEP 185


>gi|153810178|ref|ZP_01962846.1| hypothetical protein RUMOBE_00559 [Ruminococcus obeum ATCC 29174]
 gi|149833357|gb|EDM88438.1| hypothetical protein RUMOBE_00559 [Ruminococcus obeum ATCC 29174]
          Length = 802

 Score =  307 bits (786), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 202/709 (28%), Positives = 351/709 (49%), Gaps = 9/709 (1%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
               KN+           +  Q       +  +  ++  +++R++Q    E+ + + GS 
Sbjct: 33  TGSAKNIKTGLDLSGGVSITYQAKDSNPSAEDMSDTVYKLQKRVEQYST-EAQVYKEGSD 91

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSF-HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
           RI +++PG  D   +   LG    + F      + +      G  ++     ++      
Sbjct: 92  RIAVEIPGVTDADAILNDLGKPGSLCFITMTDDDGNANFSSTGSGYVLARSLDEIRESGS 151

Query: 247 VEISGIHLNGATANFDPKT----HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V + G  +  A             +  V ++  + G  +F + T  N+GK +A+V D ++
Sbjct: 152 VVLEGTDVKDAQGGAFQSDKNSSREYAVSLTLTDEGKTKFADATEANVGKQIAIVYDNQI 211

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L+AP +N+AI  G+AQI+G  ++E A  LA+ +R GSL I+L  +    V A LG ++I 
Sbjct: 212 LSAPKVNEAITGGQAQITGMSSVEEAQNLASYIRIGSLSIELEELRSSVVAAQLGEEAIS 271

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A + GLV++++FMI++Y   G+VA  ++ L   + L  L+    TLTLP IAGI+L
Sbjct: 272 TSVMAGLIGLVIVIIFMIIMYRLPGVVAGVALILYTAIVLITLNAFDITLTLPGIAGIIL 331

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           GIG+AVD+N+++  RI+EE     SV  S+  GFS+A+S IFD NIT LIA++VL + G 
Sbjct: 332 GIGMAVDANVIIYARIQEEIAAGNSVRASIKSGFSKAFSAIFDGNITTLIASLVLMWLGS 391

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
           G V+GFA T+ L I++SMFTA+ + R +M  +               +  +       + 
Sbjct: 392 GTVKGFAYTLALGIVVSMFTALVVSRFVMNALYAVGFHDEKFYGRAKQRKVFNVVGKRKV 451

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                  + +S   ++     +    LNY +DF GG    V  N  +D+  + S +  + 
Sbjct: 452 FFIISIILILSGPVAMAIHHNVDGTALNYALDFSGGTATTVTFNEDMDIKQIDSEVTPVV 511

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                 +N    K            +++Q    ++    + +     ++  TE +   +S
Sbjct: 512 EEVTGDKNVQPTKVVGTNQVVIKTRTLSQEEREKLDNALVEKFNVDDSLITTESISSTVS 571

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721
            E+ R  +V VI++ + ML YIW RFK   FA  A+  L+ D+     F+ +  I    T
Sbjct: 572 SEMRRDAVVAVIVATLCMLAYIWFRFKDIRFASSAVLALLHDVLVVFAFYGISRISVGNT 631

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            +A +LT++GYS+N  +V++DR+R+N K   +  +  +++++SI +TL RS+YTS   F+
Sbjct: 632 FIACMLTIVGYSINATIVIFDRIRENTK--GSRSNLEEIVNESITQTLTRSMYTSFTTFV 689

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            V  + + G S I  FA P+  G++  A SS+ I   + L +  +  K 
Sbjct: 690 MVAVLYIMGVSSIREFAAPLMVGVICGAYSSVCITGALWLVMKRYYKKP 738


>gi|187933322|ref|YP_001885227.1| protein export protein SecD [Clostridium botulinum B str. Eklund
           17B]
 gi|187721475|gb|ACD22696.1| protein export protein SecD [Clostridium botulinum B str. Eklund
           17B]
          Length = 720

 Score =  307 bits (785), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 183/633 (28%), Positives = 338/633 (53%), Gaps = 11/633 (1%)

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           + + + TT      +V    +           +  +      E +  ++G  +  A+A  
Sbjct: 85  VAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSGNLVFKSPEGEEILTGKDVKKASAVL 144

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           + +   PVV +  ++ G + F E T   +G+ ++V +D  +LT+P +   I  G A I+G
Sbjct: 145 NQQDGNPVVSLELNDDGQKAFAEATGKYVGQKISVYMDDELLTSPTVQTQITDGSAIITG 204

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
           + ++E A  LA ++ +G+LP+ +  V  +NVGA LG+ ++     A   G+ L+ LFMI+
Sbjct: 205 STSLEDAKKLAGIINSGALPVTVKAVSVQNVGAQLGATALPNALKAGAIGIGLVFLFMIL 264

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   G++A  ++ L + +TL + S +G TLTLP IA ++L IG+AVD+N+L+ ERI+EE
Sbjct: 265 YYRVPGILASIALTLYITITLLIFSEIGVTLTLPGIAALLLTIGMAVDANVLIFERIKEE 324

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            ++  S+  S+  GF  A S+I DSN+T ++A ++L+F G G V+GFA+T+ + I++S+F
Sbjct: 325 LKRGISIKTSVKKGFENALSSIVDSNVTTILAGLILYFLGSGTVKGFAVTLMIGIIVSLF 384

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR---ARFWGVGISILFSI 558
           T++ + + ++   +    +K +    + R          Q+ +        + IS++  +
Sbjct: 385 TSLVVTKVLVNLSVDIGLLKKLSHFGVKREEEDIKTGERQYFKIIEKSKIWLSISLIVIL 444

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                LFT GLN+GIDFKGG QL +     VD   V + +++     ++    + +    
Sbjct: 445 LGCGFLFTKGLNFGIDFKGGTQLTIQLKDGVDKQDVDNIIKTYASDAVTNTINNNQYEVK 504

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                    S   T + E         +  + +   + +G  I +EL +  ++ + ++ I
Sbjct: 505 SGDLNSENVSSIMTELKEKY------DLDDNALLAQDEIGASIGKELTQNSLIALFVACI 558

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ML YI +RF+  F + A+   + D+  T+  +A+FGI  N   +AA+LT+IGYS+ND +
Sbjct: 559 VMLGYIGVRFELKFGIAALVATLHDVLITVSVYAIFGISVNTPFIAAILTIIGYSMNDTI 618

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V++DR+R+N K      +  ++ D S+ ET+ RS+ T+M    +++ + ++    +  F 
Sbjct: 619 VIFDRIRENSKSM-RRANPIEIADTSLTETMTRSINTTMTTLFTIVAVNIF-VPTVREFT 676

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +P+  GIV  A SSIF+A+P+ +++ D   K  
Sbjct: 677 VPLIIGIVAGAYSSIFVASPVWVYLKDKLGKGK 709



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 2/144 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+       L+++I  + L +A  +     ++  +      + I  GLDL+GG  +++E+
Sbjct: 1   MKKKGKSSALFTVIVLVTLFLAF-SGFKGFVVGGWEIKSFNDVIKKGLDLQGGVSVLMEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
            ED      L+   + +   + K G+    +      +I +    +   + I D ++   
Sbjct: 60  QEDKVTQDQLESTKEHISLRVNKMGVAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSG 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEI 143
             V      +             +
Sbjct: 120 NLVFKSPEGEEILTGKDVKKASAV 143


>gi|295108469|emb|CBL22422.1| protein translocase subunit secF/protein translocase subunit secD
           [Ruminococcus obeum A2-162]
          Length = 803

 Score =  307 bits (784), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 201/709 (28%), Positives = 353/709 (49%), Gaps = 9/709 (1%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
               KN+           +  Q       +  +  ++  +++R++Q    E+ + + G+ 
Sbjct: 33  TGSAKNIKTGLDLSGGVSITYQAKDSNPSAEDMSDTVYKLQKRVEQYST-EAQVYKEGND 91

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSF-HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
           RI +++PG  D   +   LG    + F      + +      G  +      ++      
Sbjct: 92  RIAVEIPGVTDADAILNDLGKPGSLCFITAEDDDGNANFTSTGSGYALARSLDEIREAGS 151

Query: 247 VEISGIHLNGATANFDPKT----HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V + G  +  A             +  V ++  + G  +F + T+ N+GK +A+V D ++
Sbjct: 152 VVLEGTDVKDAQGGAFQSDKNSSREYAVSLTLTDEGKTKFADATKANVGKQIAIVYDNQI 211

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L+AP +N+AI  G+AQI+G   +E A  LA+ +R GSL I+L  +    V A LG ++I 
Sbjct: 212 LSAPKVNEAITGGQAQITGMADVEEAQNLASYIRIGSLSIELEELRSSVVAAQLGEEAIS 271

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A + GL+++++FMI++Y   G+VA  ++ L   + L  L+    TLTLP IAGI+L
Sbjct: 272 TSVMAGLIGLIIVIVFMIIMYRLPGVVAGVALILYTAIVLITLNAFDITLTLPGIAGIIL 331

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           GIG+AVD+N+++  RI+EE     SV  S+  GFS+A+S IFD NIT LIA++VL + G 
Sbjct: 332 GIGMAVDANVIIYARIQEEIAAGNSVRASIKSGFSKAFSAIFDGNITTLIASLVLMWLGS 391

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
           G V+GFA T+ L I++SMFTA+ + R +M  +               +  +       + 
Sbjct: 392 GTVKGFAYTLALGIVVSMFTALVVSRFVMNALYAVGFHDEKFYGRAKQRKIFNIVGKRKV 451

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                  + +S   ++     +    LNY +DF GG    V  N  +D+  + S +  + 
Sbjct: 452 FFIISIVLILSGPVAMLIHHNVDGTALNYALDFSGGTATTVTFNEDMDIKQIDSEVTPVV 511

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                 +N    K            +++Q    ++ +  + +     ++  TE +   +S
Sbjct: 512 EEVTGDKNVQPTKVVGTNQVVIKTRTLSQEEREKLDQALVDKFDVDESLIATESISSTVS 571

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721
            E+ R  +V VI++ + ML+YIW RFK   FA  A+  L+ D+     F+ +  I    T
Sbjct: 572 SEMRRDAVVAVIVATLCMLVYIWFRFKDIRFASSAVLALLHDVLVVFAFYGISRISVGNT 631

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            +A +LT++GYS+N  +V++DR+R+NMK   + +   +++++SI +TL RS+YTS   F+
Sbjct: 632 FIACMLTIVGYSINATIVIFDRIRENMK--GSRVKLDEIVNESITQTLTRSMYTSFTTFV 689

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            V  + + G S I  FA P+  G++  A SS+ I   + L +  +  K 
Sbjct: 690 MVAVLYILGVSSIREFAAPLMVGVICGAYSSVCITGALWLVMKRYYRKP 738


>gi|225568641|ref|ZP_03777666.1| hypothetical protein CLOHYLEM_04719 [Clostridium hylemonae DSM
           15053]
 gi|225162569|gb|EEG75188.1| hypothetical protein CLOHYLEM_04719 [Clostridium hylemonae DSM
           15053]
          Length = 721

 Score =  307 bits (784), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 202/688 (29%), Positives = 331/688 (48%), Gaps = 26/688 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q          +  ++  +++R++Q    E+ + + G  RI I++PG  D + +   
Sbjct: 51  ITYQVKDKNPSEEEMRDTIYKLQKRVEQYST-EANVYQEGDDRINIEIPGVSDANAILDE 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    + F          G        R  +                        D   
Sbjct: 110 LGKPGSLVFQTQDNETVITGSDVKTASARAGE-----------------------DDMGN 146

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +  V++  +E G ++F E T  N+GKP++++ DG  +++P +  AI  G+A I+GNF+ 
Sbjct: 147 KEYSVELDLNEEGTKKFAEATEANVGKPISIIYDGETISSPTVQTAITGGQAYITGNFSY 206

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA+ +R G L ++L  +    VGA LG  +I     A   GL ++ LFMI +Y  
Sbjct: 207 EEAESLASTIRIGGLKLELEELRSNVVGAQLGEQAISTSLKAGAIGLAIVFLFMICVYLL 266

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL +  ++ +   L L +L+    TLTLP IAGI+L IG+AVD+N+++  R+REE  K 
Sbjct: 267 PGLASSLALIIYTGLVLVILNAFNVTLTLPGIAGIILSIGMAVDANVIIFARVREEMSKG 326

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +SV  SL  GF +A S I D N+T LIA  VL+F G G+V+GFA T+ + I++SMFTA+ 
Sbjct: 327 KSVRNSLKTGFQKAMSAIVDGNVTTLIAAAVLWFKGSGSVKGFAQTLAIGIIVSMFTALV 386

Query: 506 IVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           I R ++         K  +   P      I      ++  A    V I     +      
Sbjct: 387 ITRMIVYAFYAVGLRKEKLYYRPRKERKPIDFLGRKKWFFALSLAVVILGFVFMGVNGSK 446

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
                 Y ++F+GG    V  N+   +  +   +  +        N   +K         
Sbjct: 447 GKGAFAYSLEFEGGTSTNVTFNKDYTIEEIDKEIVPVVEEVTGDANVQTQKVADTNQVII 506

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
              ++       + K    +     ++   E +   IS E+ +  I+ VI++ I MLIYI
Sbjct: 507 KTKTLGLDVREALNKALADKFKVDESLITAENISSTISNEMRQDAIMAVIVATIFMLIYI 566

Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           W RFK   FA  A+T L+ D+   L F+A+  I    T +A +LT++GYS+N  +V++DR
Sbjct: 567 WFRFKDIRFAASAVTALLHDVLVVLTFYAVARISVGNTFIACMLTIVGYSINATIVIFDR 626

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           +R+ ++L + +    D+++KSI +TL RS+YTS+  F+ V  + V G S I  FA+P+  
Sbjct: 627 IREELRLRSKTTELVDVVNKSITQTLTRSIYTSLTTFVMVAILFVMGVSSIREFALPLMV 686

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNA 831
           GI+  A SS+ I   +   +     K A
Sbjct: 687 GIICGAYSSVCITGALWYVMRTKIGKKA 714



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 76/181 (41%), Gaps = 4/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +VG ++  + I   +    I    + +++   +     L +   LI+     L    
Sbjct: 229 RSNVVGAQLGEQAISTSLKAGAIGLAIVFLFMICVY-LLPGLASSLALIIYTGLVLVILN 287

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F +   L  +A ++  IG +V+  V+++ R+R+ M   +   S R+ +     + +   
Sbjct: 288 AFNVTLTLPGIAGIILSIGMAVDANVIIFARVREEM---SKGKSVRNSLKTGFQKAMSAI 344

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           V  ++   I+   +   G   +  FA  +A GI+V+  +++ I   I+   Y    +  +
Sbjct: 345 VDGNVTTLIAAAVLWFKGSGSVKGFAQTLAIGIIVSMFTALVITRMIVYAFYAVGLRKEK 404

Query: 833 I 833
           +
Sbjct: 405 L 405



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 54/156 (34%), Gaps = 2/156 (1%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             I LGLDL GG  +  +V + +     ++    +L+  +++        ++  ++I + 
Sbjct: 37  ENIKLGLDLAGGVSITYQVKDKNPSEEEMRDTIYKLQKRVEQYSTEANVYQEGDDRINIE 96

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                    I D++      V      D +  +  +  +   +     +  ++  S  ++
Sbjct: 97  IPGVSDANAILDELGKPGSLVFQT--QDNETVITGSDVKTASARAGEDDMGNKEYSVELD 154

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
            + E  ++  +    +      +      I  P  Q
Sbjct: 155 LNEEGTKKFAEATEANVGKPISIIYDGETISSPTVQ 190


>gi|332883137|gb|EGK03420.1| hypothetical protein HMPREF9456_01487 [Dysgonomonas mossii DSM
           22836]
          Length = 996

 Score =  306 bits (783), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 192/795 (24%), Positives = 375/795 (47%), Gaps = 31/795 (3%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVN 123
           +        + LR+ + + G+   +++++    +I +     +  E +   +        
Sbjct: 197 LQSVADNSFNVLRTRIDRFGVVAPNIQKLDRAERILIELPGVKEPERVKKLLQGSANLEF 256

Query: 124 SKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISH-AIEQSMEIIRQRIDQIGISES- 179
            K     + +  + +     +  +  +           A   +  +  +  D +G ++  
Sbjct: 257 WKTYNLQEIQNYIELMDQRSKEVLAANGTTAPVATDSLAAATTDSVKVESTDNLGFTKPL 316

Query: 180 -TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
            +     +   ++    + D + + ++L     +    +      K              
Sbjct: 317 RSYFTTFAGGAIVGFVNKTDTAAVNKILHRYQDLYPGDLTFAWGFKAEDAKETQFALYSL 376

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               ++    + G  +  A A+         VD+  +  GA+R+  +T    G+ +A+VL
Sbjct: 377 RGDGIKKGPALDGDVVISAKADQSQHGSAWEVDMQMNTTGAQRWATITGAEQGRSIAIVL 436

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG V +AP +   I  G++QI+G FT++ A  L  +L++G +   ++IV+E  VG  LG 
Sbjct: 437 DGSVYSAPNVQNKIEGGRSQITGRFTVDDAKDLENVLKSGKMKAGVHIVQEDIVGPSLGQ 496

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           ++I  G  + +  LVL+++++ V+YG   GL+A+ ++ +N+  T+ +L+  GA +TLP I
Sbjct: 497 EAITAGIFSFLLALVLLMIYICVIYGLIPGLIANSALIVNLFFTIGILAAFGAVMTLPGI 556

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL + LAVD+N+L+ ER REE R  ++V  ++  G+  A+S IFD +++ +I  ++L
Sbjct: 557 TGLVLALALAVDANVLIYERTREELRAGKNVKVAIVDGYRHAFSAIFDGHVSQVITAIIL 616

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            +FG G ++GFA T+ + I+ S  T++ + R    +++   K +++  +      L    
Sbjct: 617 AYFGTGPIQGFATTLIIGIIASFLTSVFLTRIFYEYMLEKGKFRNLTFSTALSKKL-FLN 675

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I F+      V  S +  +  +  LF +GLN GIDF GG    +  ++ V+   +   
Sbjct: 676 TNINFLGMTKKVVIFSAIILVSGLASLFINGLNGGIDFTGGRNYLIRFDKNVNADDIEKL 735

Query: 598 LESLQIGDISFQNFDGE-----KNFLVRLQYQPGDSVAQTRVLEMVKKKI---------T 643
           L     G        G          VR+        A   V   ++ K+          
Sbjct: 736 LVPEFQGSTVLVLTSGSATQSSTTSQVRVTTNYKVEEATDAVETEIRAKMTSALKEYLAP 795

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                + IQ+++ VGP ++ +L     + V+I+ I M +YI IRF+   F+ G    +  
Sbjct: 796 NTTIDNYIQSSQRVGPSVADDLKTAATIAVVIAVICMAVYILIRFRNIAFSAGTFFAVAH 855

Query: 703 DITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           D    +  ++L      F +E + + +AAVLT++GYS+NDKVV++DR+R+   +Y    +
Sbjct: 856 DAVLVIFLYSLLYKIMPFSMEIDQSFIAAVLTVVGYSINDKVVIFDRIREIRNMYPKR-N 914

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             + I++++N TLGR++ TS+++ + V  + + GG  I SF   +  GI++   SS+F+A
Sbjct: 915 ITETINEALNSTLGRTMNTSLSSMLVVFCIFLLGGDTIRSFTFAIFIGIIIGTYSSVFVA 974

Query: 817 APILLFIYDWRAKNA 831
            PI   I+    KN 
Sbjct: 975 TPIAWAIFKKEEKNK 989



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 51/336 (15%), Positives = 107/336 (31%), Gaps = 21/336 (6%)

Query: 40  PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT 99
            +  I LGLDL+GG  +++EVD    +       ++  ++ L   G      R+  N+  
Sbjct: 95  REKEIGLGLDLKGGMSVIVEVDAAAVLRSLGDPDNEAFQTAL---GQASDENRKGSNRDY 151

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +S    +FK +  +     L  + S      +  +  T  + ++  VL        +   
Sbjct: 152 ISIFVDKFKASNGN---NKLASIFS---TKLRDQVSPTDDDNKVVAVL-----RTELQSV 200

Query: 160 IEQSMEIIRQRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
            + S  ++R RID+ G+    IQ+   + RILI+LPG ++P R+++LL  +A + F K  
Sbjct: 201 ADNSFNVLRTRIDRFGVVAPNIQKLDRAERILIELPGVKEPERVKKLLQGSANLEFWKTY 260

Query: 219 PNNSKK------GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
                +                +        +     +   +   + +    T       
Sbjct: 261 NLQEIQNYIELMDQRSKEVLAANGTTAPVATDSLAAATTDSVKVESTDNLGFTKPLRSYF 320

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
           +    GA   F    D       +     +    +        +      F + +     
Sbjct: 321 TTFAGGAIVGFVNKTDTAAVNKILHRYQDLYPGDLTFAWGFKAEDAKETQFALYSLRGDG 380

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                      +   +          +   +     
Sbjct: 381 IKKGPALDGDVVISAKADQSQHGSAWEVDMQMNTTG 416


>gi|261749600|ref|YP_003257286.1| bifunctional-export transmembrane SecDF protein [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
 gi|261497693|gb|ACX84143.1| bifunctional-export transmembrane SecDF protein [Blattabacterium
           sp. (Periplaneta americana) str. BPLAN]
          Length = 951

 Score =  306 bits (783), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 184/794 (23%), Positives = 362/794 (45%), Gaps = 48/794 (6%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVN 123
           +   +    + L S + K G+   ++++    N+I +        + I + +    +   
Sbjct: 174 IELSISDTHNILISRMDKFGVVQPNVQRIKKSNRILIELPGIENIDRIKNILQKRAELHF 233

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            ++                   +    + ++ +      ++   R+    I +   +   
Sbjct: 234 FEIYN-------FREIFPFFEKINKIYSENEKLERFEPNNLSSARKTRSFIKMLNISKIN 286

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
              + +++ L  +++ +++   L +   + +      N K  +                 
Sbjct: 287 KMDNNLIVGLVHKKEMNKITDFLNSMDVVEYLPYALRNIKFLWGSKTYQYNQEKYVPLFA 346

Query: 244 EDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +   S    +  +        ++  ++I  ++ GA+ +   T  NIG+ +A+VLD  V
Sbjct: 347 VKEENNSLNGDIIISAYKSFGPFNEIFINIKMNQEGAKNWKIFTEKNIGRNIAIVLDDLV 406

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            TAP +   IP+G +QISGN +++ +  L  +L  G LP  + I++   VG  LG ++I 
Sbjct: 407 YTAPFVKSVIPNGISQISGNLSLQESEDLVNVLSTGRLPTSVKIIQSEVVGPSLGKEAIQ 466

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  +    ++ + ++M   Y   GL A+ ++  N +  L  L  + + LT P IAGI+L
Sbjct: 467 KGIFSFFIAIIFVFIWMFYYYIILGLYANIALIFNFVFILGFLISINSVLTFPGIAGIIL 526

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDM--GFSRAYSTIFDSNITALIATVVLFFF 480
            + +++DS +L+ E+I+E+ R   S+  ++     F  A S+I D  +T L+  ++LFFF
Sbjct: 527 TLAMSMDSYVLIYEKIKEDMRNGISIRSAIHNSYTFQGALSSIIDGQVTTLLCGIILFFF 586

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G G ++GF+ T+ + I  S F++I + +  + + +   K     I          + ++ 
Sbjct: 587 GIGPIKGFSTTLIIGIFTSFFSSIYLGKLFLEWHLNKYKKIFFRIWNS-------NKVSW 639

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
            F+  R +   IS +  + S+   +  GLN GIDF GG    +  +R V    +   L  
Sbjct: 640 DFLSKRKFSYAISFICILGSLISFYYKGLNLGIDFVGGRTYIIRFDRKVLPDHISFLLSK 699

Query: 601 LQIGD----ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ---- 652
             I +           GEKN +  +      +       E+++K    + P         
Sbjct: 700 YFIENGKPSSPKVFPFGEKNKMKIVTKYKIWNENNQIDQEILEKMFLALKPYFHTIDFQD 759

Query: 653 -------------NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
                        ++E V P +++ + +   + +++S   +  YI+IRF KW F LGA+ 
Sbjct: 760 FKTIDKDKSLGILSSEKVEPVMAKYITKNAFISILLSLFGIFFYIFIRFKKWKFGLGALV 819

Query: 699 TLILDITKTLGFFALFG-----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +L+ D    LG F++F      +E + + +AA+LT+IGYS+ND V+VYD++RK     T 
Sbjct: 820 SLLHDTIIVLGLFSIFHERFSVLEIDQSFIAALLTIIGYSINDTVIVYDKIRKFS--GTE 877

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
           S S +++I+K IN +L R++ TS     ++  +  +GG+ I SF + + FG+ +   SSI
Sbjct: 878 SFSIKEIINKGINSSLTRTMNTSFITIWAICIILFFGGTTIRSFMLALLFGVSIGTYSSI 937

Query: 814 FIAAPILLFIYDWR 827
           FIA+ I+  +   +
Sbjct: 938 FIASSIVYDLSKKK 951



 Score =  109 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 58/147 (39%), Gaps = 5/147 (3%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +     L A   LI +    LGF            +A ++  +  S++  V++Y+++
Sbjct: 483 MFYYYIILGLYANIALIFNFVFILGFLISINSVLTFPGIAGIILTLAMSMDSYVLIYEKI 542

Query: 745 RKNMKLYTTSISFRDLIDKSIN--ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           +++M+     IS R  I  S      L   +   +   +  + +  +G   I  F+  + 
Sbjct: 543 KEDMR---NGISIRSAIHNSYTFQGALSSIIDGQVTTLLCGIILFFFGIGPIKGFSTTLI 599

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829
            GI  +  SSI++    L +  +   K
Sbjct: 600 IGIFTSFFSSIYLGKLFLEWHLNKYKK 626



 Score = 46.2 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 19/192 (9%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
                ++LGLDLRGG  L+LE+ E D +  F     + +  FLK          +  N  
Sbjct: 67  ARNKVLNLGLDLRGGISLILEISEKDLLKKFSNNSKNPV--FLKALNHADKEKEKNPNVD 124

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
             S                F      K+  D   +           I  +   +++VI  
Sbjct: 125 YFS------------SFLNFFYRNKKKIQTDFSISDFFVNRSYVDEINYTDRELEKVIRK 172

Query: 159 AIEQSM----EIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
            IE S+     I+  R+D+ G+ +    +   S+RILI+LPG ++  R++ +L   A++ 
Sbjct: 173 KIELSISDTHNILISRMDKFGVVQPNVQRIKKSNRILIELPGIENIDRIKNILQKRAELH 232

Query: 214 FHKVLPNNSKKG 225
           F ++        
Sbjct: 233 FFEIYNFREIFP 244


>gi|327439549|dbj|BAK15914.1| preprotein translocase subunit SecD [Solibacillus silvestris
           StLB046]
          Length = 757

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 192/699 (27%), Positives = 324/699 (46%), Gaps = 25/699 (3%)

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           S  +  ++    +  +   +  RI++ G+SE +IQ  G  RI +QL G  D    R+LL 
Sbjct: 50  SLVDGQKITQDVLADTTTALDNRINEFGVSEPSIQIEGEDRIRVQLAGLADQDSARELLS 109

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           +TA ++F  V  N    G          S   Q      + +                  
Sbjct: 110 STANLTFRDVNDNILLDGTDLKEGGASPSFDQQNQPIVTLTLKDAAKFAEVTQKVMSMGA 169

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
           P   +         F E       +      + + ++A  + Q + +    ISGNFT++ 
Sbjct: 170 PNNLLVVWLD----FEEGVDSYAEESKKPPEEQKFVSAASVTQVLNTTDVMISGNFTVDE 225

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
               A++L AGSLP+KL  +   +VGA  G D++     A V G++LI LFM+  Y   G
Sbjct: 226 TKNFASILNAGSLPVKLTEIYSTSVGAQFGEDALNDTVFAGVVGVLLIFLFMLFYYRLPG 285

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            ++  ++ +   L L + + + A LTLP IA IVLGIG+AVD+NIL  ERIREE R   S
Sbjct: 286 FISIITLSVFTYLVLIVFNGINAVLTLPGIAAIVLGIGMAVDANILTAERIREELRVGHS 345

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           V  +  +G  ++ S I D+ +T L+A  VLF++G  +V+GFA T+ +SIL+S  TA+   
Sbjct: 346 VKDAYKLGSKQSLSAIIDAQLTTLLAAAVLFYYGTSSVKGFATTLIISILLSFVTAVWGS 405

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI------------QFMRARFWGVGISIL 555
           R +   ++      +     +SR         I             F+  R     IS +
Sbjct: 406 RVLQGLLVNSGYFNNPAWFGISRSKQHSIDEGITSLDLTTKFDKLDFVGNRKKFYAISTI 465

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +  I +L    LN GIDF  G ++ + ++  +    V+  L+ +   +         +
Sbjct: 466 ILVAGIVVLGIFKLNLGIDFSSGTRVEIKSDTALVQEEVKDYLDEIGFANEDVVISGDNQ 525

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V                E V +K           +   V   + +EL +  +  + +
Sbjct: 526 KIAVMRYKDDFSQQQVLDFKEQVNEKYG------HEPSLSTVSATVGKELAKNAMYALAL 579

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           +A+ ++IY+ +RF+W   LGAI +L+ D+   +  F++  +E ++T +AAVLT++GYS+N
Sbjct: 580 AALGIIIYVAVRFEWRMGLGAIVSLLHDVFFIIVIFSMLRLEVDITFIAAVLTIVGYSIN 639

Query: 736 DKVVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           D +V +DR+R+N+  +    T      +++KS+ +T+GRSV T +   I V+ +   G  
Sbjct: 640 DTIVTFDRIRENIDRHEEITTKEELALIVNKSLRQTMGRSVNTVLTVIIVVIALIFLGAP 699

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            I +F+I +  G+V    SSI IAA +   +        
Sbjct: 700 SIQNFSIALLIGLVTGIYSSICIAAQVWYSLKCREMDKK 738



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 86/738 (11%), Positives = 197/738 (26%), Gaps = 51/738 (6%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE----V 60
                + + +  + LL        + +L         N + LGLDL+GG  ++ E    V
Sbjct: 2   KLANRIITFVLVVALLFTGMGTTVEKVL---------NDVKLGLDLQGGFEVLYEVESLV 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
           D        L   +  L + + + G+   S++    ++I +  A    +++  + ++   
Sbjct: 53  DGQKITQDVLADTTTALDNRINEFGVSEPSIQIEGEDRIRVQLAGLADQDSARELLSSTA 112

Query: 120 QGVNS-----------KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168
                            L             +  +++ L        ++  +        
Sbjct: 113 NLTFRDVNDNILLDGTDLKEGGASPSFDQQNQPIVTLTLKDAAKFAEVTQKVMSMGAPNN 172

Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM---SFHKVLPNNSKKG 225
             +  +   E         +   +       + + Q+L TT  M   +F      N    
Sbjct: 173 LLVVWLDFEEGVDSYAEESKKPPEEQKFVSAASVTQVLNTTDVMISGNFTVDETKNFASI 232

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
              G   ++ ++     V       G        N         V + F  M        
Sbjct: 233 LNAGSLPVKLTEIYSTSV-------GAQFGEDALNDTVFAGVVGVLLIFLFMLFYYRLPG 285

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
               I   +   L   V         +P   A + G      A IL A      L +  +
Sbjct: 286 FISIITLSVFTYLVLIVFNGINAVLTLPGIAAIVLGIGMAVDANILTAERIREELRVGHS 345

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           + +   +G+     +I       +    ++  +       +      SI L+ +  +   
Sbjct: 346 VKDAYKLGSKQSLSAIIDAQLTTLLAAAVLFYYGTSSVKGFATTLIISILLSFVTAVWGS 405

Query: 406 SLLG------ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
            +L            P+  GI      ++D  I   +   + ++ +       +     A
Sbjct: 406 RVLQGLLVNSGYFNNPAWFGISRSKQHSIDEGITSLDLTTKFDKLDFVG----NRKKFYA 461

Query: 460 YSTIFDSNITALIATVVL-----FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            STI       ++    L     F  G          +    +      I      ++  
Sbjct: 462 ISTIILVAGIVVLGIFKLNLGIDFSSGTRVEIKSDTALVQEEVKDYLDEIGFANEDVVIS 521

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
              +K+  +          + D       +        ++  ++                
Sbjct: 522 GDNQKIAVMRYKDDFSQQQVLDFKEQVNEKYGHEPSLSTVSATVGKELAKNAMYALALAA 581

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               I + V     + L  + S L  +    + F     E +             +    
Sbjct: 582 LGIIIYVAVRFEWRMGLGAIVSLLHDVFFIIVIFSMLRLEVDITFIAAVLTIVGYSINDT 641

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           +    +    I     I   E +   +++ L +     V      +++ I + F      
Sbjct: 642 IVTFDRIRENIDRHEEITTKEELALIVNKSLRQTMGRSVNTVLTVIIVVIALIF-LGAPS 700

Query: 695 GAITTLILDITKTLGFFA 712
               ++ L I    G ++
Sbjct: 701 IQNFSIALLIGLVTGIYS 718


>gi|295090918|emb|CBK77025.1| protein translocase subunit secF/protein translocase subunit secD
           [Clostridium cf. saccharolyticum K10]
          Length = 730

 Score =  306 bits (783), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 192/685 (28%), Positives = 324/685 (47%), Gaps = 30/685 (4%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   +   +  ++ ++  ++QR+      E+ + + G+ RI I +PG  D + +   
Sbjct: 45  ITYQAKDENPSAEDMKDTIYKLQQRVQNYST-EAEVYQEGNDRINIDIPGVSDANAILAE 103

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    + F                             E    ++G  ++ A A     T
Sbjct: 104 LGKPGSLVFMDS--------------------------EGTTILTGDQVSAAQAGMIDGT 137

Query: 266 --HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              + VV ++F E G + F + T +N+G+P+ ++ D  V++AP++ +AI  G+  I G  
Sbjct: 138 TGKEYVVSLTFTEEGTKAFADATTNNVGQPIYIIYDNEVVSAPIVQEAITGGQCTIDGIG 197

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           + E A  LA+ +R GSL ++L  +    VGA LG  +I     A V G  ++ +FMI +Y
Sbjct: 198 SFEEAENLASTIRIGSLSLELEELRSNVVGAKLGQQAITTSLKAGVVGFAIVAVFMIAVY 257

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              GL +  ++ L V L L LL     TLTLP +AGI+L IG+AVD+N+++  RI+EE  
Sbjct: 258 LIPGLASVIALCLYVGLILILLVSFNVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIG 317

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             ++V  ++  GF +A S I D N+T LIA  VLF+ G G V+GFA T+ + I++SMFTA
Sbjct: 318 AGKAVKTAIQNGFQKALSAIVDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTA 377

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + + R  +  +                    P     +   A    V ++    +     
Sbjct: 378 LFVTRFALNALFEMGIQNPKFYGIKREKPAKPFLKYRKLCFALSSAVIVAGFVFMGLNKS 437

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                 NY ++F+GG    V  N  +    + S +  L        +   +K        
Sbjct: 438 ATGDLFNYSMEFQGGTSTNVTFNENLSQERIESEVVPLVEDITGDADVQTQKVTGTNEVI 497

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               ++      E  K               E +   +S+E+ +  IV V+I+ + MLIY
Sbjct: 498 IKTRTLNMEEREEFEKVMQDNFGVEEGKITAESISGAVSQEMKQDAIVAVVIATVCMLIY 557

Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           IW RFK   FA  ++  L+ D+   +  +A F      T +A +LT++GYS+N  +V++D
Sbjct: 558 IWFRFKNIRFAASSVLALVHDVLVVIACYAAFKWPVGSTFIACILTIVGYSINATIVIFD 617

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+N+K      S  +++++SI +T  RSV TS+  F+ VL + + G S I  FA+P+ 
Sbjct: 618 RVRENLKERKHDQSMEEILNQSITQTFTRSVNTSLTTFVMVLILYIMGVSSIREFALPLM 677

Query: 803 FGIVVAASSSIFIAAPILLFIYDWR 827
            GIV    SS+ +A  +   +   R
Sbjct: 678 VGIVCGTYSSVCLAGSLWFEMNRRR 702



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 79/180 (43%), Gaps = 4/180 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +VG K+ ++ I   +   ++    + +++   +     L ++  L L +   L    
Sbjct: 222 RSNVVGAKLGQQAITTSLKAGVVGFAIVAVFMIAVY-LIPGLASVIALCLYVGLILILLV 280

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F +   L  VA ++  IG +V+  V+++ R+++ +       + +  I     + L   
Sbjct: 281 SFNVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGA---GKAVKTAIQNGFQKALSAI 337

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           V  ++   I+   +   G   +  FA  +A GI+++  +++F+    L  +++   +N +
Sbjct: 338 VDGNVTTLIAAAVLFWRGSGTVKGFASTLAIGIILSMFTALFVTRFALNALFEMGIQNPK 397



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 12/80 (15%), Positives = 30/80 (37%)

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA 103
           I LGLDL GG  +  +  +++     ++    +L+  ++         ++  ++I +   
Sbjct: 33  IKLGLDLAGGVSITYQAKDENPSAEDMKDTIYKLQQRVQNYSTEAEVYQEGNDRINIDIP 92

Query: 104 DSRFKENIADKVTLFLQGVN 123
                  I  ++      V 
Sbjct: 93  GVSDANAILAELGKPGSLVF 112


>gi|330444196|ref|YP_004377182.1| protein export proteins secd/secf [Chlamydophila pecorum E58]
 gi|328807306|gb|AEB41479.1| protein export proteins secd/secf [Chlamydophila pecorum E58]
          Length = 1402

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 183/841 (21%), Positives = 340/841 (40%), Gaps = 66/841 (7%)

Query: 41   KNRISLGLDLRGGSHLVLEV---DEDDFV-NGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96
            +N + LG+D  GG  L+L               +   SDEL S L K G+    +R+  +
Sbjct: 578  ENALRLGVDFIGGKQLMLSFKDHQGKRLSDKENILKVSDELYSRLNKLGVSEVEIRREGD 637

Query: 97   KITLSFADSRFKENIA-------------------DKVTLFLQGVNSKLNVDPKKNLLVT 137
             I LS   S                          +     +Q     L    +    ++
Sbjct: 638  YIYLSVPGSAKVSPAEILGTSKMSFHVVNEKFSPYNTFRYEVQRFLDYLWFSAQSQGQLS 697

Query: 138  TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
            +               + +  ++ +++  ++Q      + ES          L  +  ++
Sbjct: 698  SEFINALASQVFYGSQETLPPSVREAIGKLKQEGLAFSLEESAPSSSELDTQLSMIAIQR 757

Query: 198  DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
            D       L          V  N +  G          S G  Y++   V+  G+  +  
Sbjct: 758  DVESKVNPLM--------IVFRNYALDGASLKDIRPEFSPGEGYILSFSVKDRGVSQSSN 809

Query: 258  TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
            ++  +               G+ R               V+    + +  +  A     A
Sbjct: 810  SSPTESFYAWTSAFCQDGVSGSPRSQYSGNR---GWRMAVVLDGQVISSPVLNAPLREHA 866

Query: 318  QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
             +SGNFT      LAA L++G +     ++ E  + ++LG     +G  +    L ++++
Sbjct: 867  SVSGNFTHREVSRLAADLKSGVISFVPEVLSEETISSELGKQQGVQGAFSACLALAVLII 926

Query: 378  FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
             M V Y   G++A  ++ LN++L  A L  L A LTL  +AGI+L +G+AVD+N+LV ER
Sbjct: 927  LMSVYYKFGGVIASGAVILNMLLIWAALQYLDAPLTLSGLAGIILAMGMAVDANVLVFER 986

Query: 438  IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
            IREE   ++S+  S++ G+ +A+  IFDSN+T ++A+V+L     G ++GFA+T+ L I 
Sbjct: 987  IREEFLLSRSLALSIETGYKKAFGAIFDSNLTTVLASVLLLLLDTGPIKGFALTLILGIF 1046

Query: 498  ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
             SMFTA+ + +   +  I     K+ +         I           + W V  S++  
Sbjct: 1047 SSMFTALFMTKFFFVMWI----RKTQETQLHMMNKFIGIRHDFLKECKKLWLVSGSVIVL 1102

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRP-VDLSVVRSNLESLQI------------- 603
                          G+DFKGG    V A     DLS ++  + +                
Sbjct: 1103 GGVALGFGAWNSVLGMDFKGGYAFTVQAENHDADLSKIQKQVANKLQLAGLSSRDYRIKV 1162

Query: 604  --------GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                       S +          R +    +      +L      ++            
Sbjct: 1163 LSSSEKLKVYFSRKALSRANPSFAREEISDPELAVAVGLLSETGVDVSSESLKEIQNFWT 1222

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
             V  + S ++ ++ ++G++ +   +L+Y+  RF+W +A  A+  L+ D+  T        
Sbjct: 1223 KVSGQFSNKMRQQALLGLLGAMGIILLYVSFRFEWRYAFSAVCALMHDLIATCAVLVATH 1282

Query: 716  -----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                 I+ +L AV A++T++GYS+N+ ++++DR+R++ +         +LI+ ++ +TL 
Sbjct: 1283 FFLQKIQIDLQAVGALMTVLGYSLNNTLIIFDRIRED-RQERLFTPMPELINDALQKTLS 1341

Query: 771  RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            R+V T+      +L +   GG  + +FA  M  GI++   SS++IA P+LLF+       
Sbjct: 1342 RTVMTTATTLSVLLILLFVGGGAVFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEKLK 1401

Query: 831  A 831
             
Sbjct: 1402 Q 1402


>gi|256784320|ref|ZP_05522751.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           lividans TK24]
 gi|289768201|ref|ZP_06527579.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           lividans TK24]
 gi|289698400|gb|EFD65829.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           lividans TK24]
          Length = 797

 Score =  306 bits (782), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 202/715 (28%), Positives = 332/715 (46%), Gaps = 36/715 (5%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +I +        +    A ++++E++R RID +G++E TI R G +R++++LPG QDP
Sbjct: 53  GTQIVLETKSTETTKADREATDRTVEVLRGRIDALGVAEPTIVRSGENRVVVELPGVQDP 112

Query: 200 SRLRQLLGTTAKMSFHKV---------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            +   +LG TA+++ H V               +    G R L D  G    ++      
Sbjct: 113 KKAADVLGRTAQLTVHSVLGAAEKPADATEGRTETAEDGERVLPDESGQSLRLKAATLTG 172

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP-------------LAVV 297
                              V + F + G+ R+ +VT +    P               ++
Sbjct: 173 QDVKGADARFDQQNGAGWTVTVDFKDSGSDRWAQVTGEAACNPAGDPTRRVAIVLDDKII 232

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
              +V  +      I  G  QI+G+F    A  LA +++ G+LP+ +  +E+R +GA LG
Sbjct: 233 SSPQVDPSVSCGAGITGGSTQITGSFDDAEARELALLIKGGALPVPVETIEQRTIGATLG 292

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            ++I  G  A V G  L  LF+IV+Y   G +A  ++    +++ A L+ +GATLTLP +
Sbjct: 293 DEAIDAGAWAAVIGTALTALFIIVVYRLMGALATVALLCYGLISYAALAAVGATLTLPGL 352

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           AG VL IG+AVD+N+LV ER REE   R   S   +L  GF  A+S I DSNIT LIA  
Sbjct: 353 AGFVLAIGMAVDANVLVFERAREEQAARTRPSTRSALTAGFRSAFSAIADSNITTLIAAA 412

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRF 531
           +LFF   G V+GF +T+G+ +L SM +A+ I R +  F      +         +     
Sbjct: 413 LLFFLASGPVKGFGVTLGIGVLASMVSALVITRVLAEFAASRPAVFRRPRITGISSTGPV 472

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                      MR     +  S++  + +   +   GLN+GI+F GG  +       VD 
Sbjct: 473 RDALLRRDPFLMRRPRRWLAASLIVLVVAGSGILVRGLNFGIEFTGGRLIEYSTATQVDP 532

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
              R  L          Q+                           V K + E+   +  
Sbjct: 533 DRARDALADAGFPRAVVQSSGDGD-------LTVRTEELSDTEAATVTKAVAELGGETEK 585

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              E++GP +  EL R  ++ + ++  A L Y+ +RF+  F   A+  L  D+   +G F
Sbjct: 586 VRDELIGPSLGEELRRDALIALGLALAAQLAYLAVRFRLLFGTAAVGALAHDVVILVGVF 645

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A  G   +   +AA+LT+IGYSVND VV++DR+R+ +        F  L + +I +TL R
Sbjct: 646 AWLGKPIDGVFLAALLTVIGYSVNDSVVLFDRIRE-LLGKERKAPFDRLTNDAILQTLPR 704

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +V T M A + +  +A+     +  FA+ +  G+ V   SS+F A+P+ + +++ 
Sbjct: 705 TVNTGMGAVLILASLAILADDSLTDFALALLIGVGVGTYSSVFTASPLAIELHNR 759


>gi|46198653|ref|YP_004320.1| bifunctional preprotein translocase subunit SecD/SecF [Thermus
           thermophilus HB27]
 gi|55980666|ref|YP_143963.1| bifunctional preprotein translocase subunit SecD/SecF [Thermus
           thermophilus HB8]
 gi|46196276|gb|AAS80693.1| probable protein-export membrane protein [Thermus thermophilus
           HB27]
 gi|55772079|dbj|BAD70520.1| probable SecDF protein-export membrane protein [Thermus
           thermophilus HB8]
          Length = 735

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 217/696 (31%), Positives = 360/696 (51%), Gaps = 25/696 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP--GEQDPSRLR 203
           ++ + +++      +E++  ++  RI+ +G++E  IQ  G  RI+++LP   + D  R  
Sbjct: 45  IVLEADVENPTLDDLEKARTVLENRINALGVAEPLIQIQGQKRIVVELPGLSQADQDRAL 104

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE----------DKVEISGIH 253
           +L+G  A + F  V    +        + LR++                      ++G  
Sbjct: 105 KLIGQRAVLEFRIVKEGATGTTVAQINQALRENPRLNREELEKDLIKPEDLGPPLLTGAD 164

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
           L  A A FD    +P V ++F   GA++F EVTR NIGK LA+VLDGRV TAPVI QAI 
Sbjct: 165 LADARAVFDQFG-RPQVSLTFTPEGAKKFEEVTRQNIGKRLAIVLDGRVYTAPVIRQAIT 223

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
            G+A I G  ++E A  +A +LR+GSLP+ L + E R +G  LG D+I  G  + + G +
Sbjct: 224 GGQAVIEGLSSVEEASEIALVLRSGSLPVPLKVAEIRAIGPTLGQDAIQAGIRSALIGTL 283

Query: 374 LIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
            I L +   YG   GLVA   +     L L LLS LGATLTLP IAG+VL +G AVD N+
Sbjct: 284 AIFLLIFAYYGPHLGLVASLGLLYTSALILGLLSGLGATLTLPGIAGLVLTLGAAVDGNV 343

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L  ERI+EE R  + +  ++  GF  +  TI D NI  L+A   L+ +  G VRGFA+ +
Sbjct: 344 LSFERIKEELRAGKKLRQAIPEGFRHSTLTIMDVNIAHLLAAAALYQYATGPVRGFAVIL 403

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
            + ++ S+F+ +   R ++  +    +++           +        FM    +    
Sbjct: 404 AIGVVASVFSNLVFSRHLLERLADRGEIR---------PPMWLVDPRFNFMGPARYVTAA 454

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           ++L +  +  ++F  G NY IDF GG    + A   V++  +R  LE             
Sbjct: 455 TLLLAALAAGVVFAKGFNYSIDFTGGTAYTLRAEPNVEVETLRRFLEEKGFPGKEAVITQ 514

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            +       ++              +++     +  + + + E VGP I  EL R  ++ 
Sbjct: 515 VQAPTAAYREFLVKLPPLSDERRLELERLFASELKATVLAS-ETVGPAIGEELRRNAVMA 573

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V++    +L+Y+  RF W F + +I  +  D+    G ++L G+EF++  +AA+LT++GY
Sbjct: 574 VLVGLGLILLYVAFRFDWTFGVASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIVGY 633

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           S+ND +VV DR+R+N KL    + + +L+++SIN+TL R+V TS+   + +L +   GGS
Sbjct: 634 SINDSIVVSDRIRENQKLLRH-LPYAELVNRSINQTLSRTVMTSLTTLLPILALLFLGGS 692

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           V+  FA+ +  GI V   SSI++ + +++   + R 
Sbjct: 693 VLRDFALAIFVGIFVGTYSSIYVVSALVVAWKNRRK 728



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 37/111 (33%), Gaps = 4/111 (3%)

Query: 35  FPSAMPKNR-ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
           +    P+   + LGLDL+GG  +VLE D ++     L+     L + +   G+    ++ 
Sbjct: 23  WKPWAPEEPKVRLGLDLKGGLRIVLEADVENPTLDDLEKARTVLENRINALGVAEPLIQI 82

Query: 94  IQN-KITLSFAD--SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
               +I +         ++     +          +        +    + 
Sbjct: 83  QGQKRIVVELPGLSQADQDRALKLIGQRAVLEFRIVKEGATGTTVAQINQA 133


>gi|289550598|ref|YP_003471502.1| Protein-export membrane protein SecD/Protein-export membrane
           protein SecF [Staphylococcus lugdunensis HKU09-01]
 gi|289180130|gb|ADC87375.1| Protein-export membrane protein SecD/Protein-export membrane
           protein SecF [Staphylococcus lugdunensis HKU09-01]
          Length = 762

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 178/696 (25%), Positives = 319/696 (45%), Gaps = 23/696 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ     RI +QL G ++ ++ R +L + A 
Sbjct: 54  GDKIDKKALQSTAQTLENRVNVLGVSEPRIQVEDPDRIRVQLAGVKNQNQARDVLSSQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++      N    G        +     Q   E  V       +      +  + K    
Sbjct: 114 LTIRDANDNVKLTGKDIVQGSAKQEFKQQ-TNEPTVTFKLKDRDKFKKVTEEISKKKENM 172

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +       +                           IN           G   ++ A  +
Sbjct: 173 MVVWLDYEKGDSYHKELQKKNENDRKYVSAASVNQPINSDSVEISGGFHGQEGVKKAKQI 232

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           + +L AGSLP+KL+ +   +VGA  G D++ K   A   G+ +I LFM+  Y   G VA 
Sbjct: 233 SELLNAGSLPVKLDELTSTSVGAQFGQDALDKTIFASFIGIAVIYLFMVGFYRLPGFVAI 292

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 293 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 352

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R ++
Sbjct: 353 YTKANRSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 412

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++     K        +     D                  F++     +G+SIL  I
Sbjct: 413 SLLVSSNYFKKKFWLFGVKKKQRHDINEGKDVHDLKTSFERWNFVKLAKPLIGLSILILI 472

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I +L    LN GIDF  G ++ V +N  +  + V   ++ + +     Q     K   
Sbjct: 473 VGIVILSIFKLNLGIDFSSGSRVDVESNHSLSQAKVEKTMKDVGLKADEIQINGDGKKQA 532

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
             +           ++ +  K             +   V P I +EL +  +  +I ++I
Sbjct: 533 TIMFKHDLAKKDIAKLNDKFK------NEFGHSPSVNTVSPVIGQELAKNALKALIYASI 586

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L ++  L+ D    +  F+LF IE ++T +AAVLT+IGYS+ND +
Sbjct: 587 GIIIYVSLRFEWRMGLSSVLALLHDAFMIVAVFSLFRIEVDITFIAAVLTIIGYSINDTI 646

Query: 739 VVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+       S     D++++SI +T+ RS+ T +   + V+ + ++G   I 
Sbjct: 647 VTFDRVRENLHKLKVITSPEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILLFGAPSIF 706

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +F++ +  G++    SSIFIA P+   +   + K +
Sbjct: 707 NFSLALLVGLISGVFSSIFIAVPLWGIMKKRQLKKS 742



 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 89/252 (35%), Gaps = 4/252 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L           + + N    +    +  N     + +       G    +         
Sbjct: 177 LDYEKGDSYHKELQKKNENDRKYVSAASVNQPINSDSVEISGGFHGQEGVKKAKQISELL 236

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               +        +  VG +  ++ + K I    I    + +++   ++      AI  L
Sbjct: 237 NAGSLPVKLDELTSTSVGAQFGQDALDKTIFASFIGIAVIYLFMVGFYRLP-GFVAIIAL 295

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
              I  TL  F        L  +AA++  +G +V+  +++Y+R++  +++     + +  
Sbjct: 296 TTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI---GRTLKQA 352

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             K+   +      +++   I+   +  +G S +  FA  +  GI++   +++F++  +L
Sbjct: 353 YTKANRSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 412

Query: 821 LFIYDWRAKNAR 832
             +        +
Sbjct: 413 SLLVSSNYFKKK 424


>gi|21224486|ref|NP_630265.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           coelicolor A3(2)]
 gi|4007709|emb|CAA22394.1| putative SecDF protein-export membrane protein [Streptomyces
           coelicolor A3(2)]
          Length = 795

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 202/715 (28%), Positives = 332/715 (46%), Gaps = 36/715 (5%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +I +        +    A ++++E++R RID +G++E TI R G +R++++LPG QDP
Sbjct: 51  GTQIVLETKSTETTKADREATDRTVEVLRGRIDALGVAEPTIVRSGENRVVVELPGVQDP 110

Query: 200 SRLRQLLGTTAKMSFHKV---------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            +   +LG TA+++ H V               +    G R L D  G    ++      
Sbjct: 111 KKAADVLGRTAQLTVHSVLGAAEKPADATEGRTETAEDGERVLPDESGQSLRLKAATLTG 170

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP-------------LAVV 297
                              V + F + G+ R+ +VT +    P               ++
Sbjct: 171 QDVKGADARFDQQNGAGWTVTVDFKDSGSDRWAQVTGEAACNPAGDPTRRVAIVLDDKII 230

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
              +V  +      I  G  QI+G+F    A  LA +++ G+LP+ +  +E+R +GA LG
Sbjct: 231 SSPQVDPSVSCGAGITGGSTQITGSFDDAEARELALLIKGGALPVPVETIEQRTIGATLG 290

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            ++I  G  A V G  L  LF+IV+Y   G +A  ++    +++ A L+ +GATLTLP +
Sbjct: 291 DEAIDAGAWAAVIGTALTALFIIVVYRLMGALATVALLCYGLISYAALAAVGATLTLPGL 350

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           AG VL IG+AVD+N+LV ER REE   R   S   +L  GF  A+S I DSNIT LIA  
Sbjct: 351 AGFVLAIGMAVDANVLVFERAREEQAARTRPSTRSALTAGFRSAFSAIADSNITTLIAAA 410

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRF 531
           +LFF   G V+GF +T+G+ +L SM +A+ I R +  F      +         +     
Sbjct: 411 LLFFLASGPVKGFGVTLGIGVLASMVSALVITRVLAEFAASRPAVFRRPRITGISSTGPV 470

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                      MR     +  S++  + +   +   GLN+GI+F GG  +       VD 
Sbjct: 471 RDALLRRDPFLMRRPRRWLAASLIVLVVAGSGILVRGLNFGIEFTGGRLIEYSTATQVDP 530

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
              R  L          Q+                           V K + E+   +  
Sbjct: 531 DRARDALADAGFPRAVVQSSGDGD-------LTVRTEELTDTEAATVTKAVAELGGETEK 583

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              E++GP +  EL R  ++ + ++  A L Y+ +RF+  F   A+  L  D+   +G F
Sbjct: 584 VRDELIGPSLGEELRRDALIALGLALAAQLAYLAVRFRLLFGTAAVGALAHDVVILVGVF 643

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A  G   +   +AA+LT+IGYSVND VV++DR+R+ +        F  L + +I +TL R
Sbjct: 644 AWLGKPIDGVFLAALLTVIGYSVNDSVVLFDRIRE-LLGKERKAPFDRLTNDAILQTLPR 702

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +V T M A + +  +A+     +  FA+ +  G+ V   SS+F A+P+ + +++ 
Sbjct: 703 TVNTGMGAVLILASLAILADDSLTDFALALLIGVGVGTYSSVFTASPLAIELHNR 757


>gi|222151523|ref|YP_002560679.1| protein translocase membrane protein SecDF subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222120648|dbj|BAH17983.1| protein translocase membrane protein SecDF subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 763

 Score =  305 bits (781), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 178/700 (25%), Positives = 324/700 (46%), Gaps = 25/700 (3%)

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
              D++    ++ + + +  R++ +G+SE  IQ     RI +QL G ++ +  R++L T+
Sbjct: 52  EKEDKITPEVVKATSKTLESRVNVLGVSEPKIQIENKDRIRVQLAGVKNQNEARKILSTS 111

Query: 210 AKMSFHKVLPNNSKKGFM--FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           A ++           G     G         +   V      S       T     ++  
Sbjct: 112 ANLTIRDANDKLLLSGKDLVQGGAKQSFDQTSNAPVVTLKLKSADKFAKITKKISQQSPN 171

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
            +V     E G    ++       +            +  IN          +G   +  
Sbjct: 172 IMVIWMDFEEGKDS-YKKEAKKEEQGKQPKYVSAAGVSQEINSQNVEISGGFNGEDGLIR 230

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  +A +L +GSLP+KL  V   +VGA  G D+++    A   G+ LI LFMI  Y   G
Sbjct: 231 AKQIADLLNSGSLPVKLTEVYSTSVGAQFGQDALHDTVLASAIGVGLIFLFMIFYYRLPG 290

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +A  S+ + + LT+   +L+   LTLP IA +VLG+G+AVD+NI++ ERI++E R  +S
Sbjct: 291 AIAVISLSVYIWLTMIAFNLISGVLTLPGIAALVLGVGMAVDANIIMYERIKDEIRIGRS 350

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           +  +   G + ++ TI D+N+T ++A +VLFF G  +V+GFA  + L I++   T + + 
Sbjct: 351 IKQAFKKGSNSSFLTILDANLTTVLAALVLFFLGTSSVKGFATMLLLGIIMIFVTQVFLS 410

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISI 554
           R ++   +      +             D                I F++     +G+S+
Sbjct: 411 RFLLKLAVNSGMFDNKFSFFGVNRKHRHDIAEGMDVQDLKSAWEHIDFVKLAKPLLGLSL 470

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
              I    ++   GLN GIDFK G ++ + + + +    ++  LE+L++   +       
Sbjct: 471 ASIIIGSIIITMMGLNLGIDFKSGSRVDIKSEQVLKEDGLKKELETLKVPSENVVVNAEN 530

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                     P        +     +K           N   V  +I +EL +  I  VI
Sbjct: 531 PKMASVQYKDPLTKEQINDLKSTFSEKYG------HEPNVNTVSSEIGKELAKNAIKSVI 584

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I++I ++IY+  RF+W   L ++ +L+ D    + FF++F +E ++T +AAVLT+IGYS+
Sbjct: 585 IASIGIIIYVTFRFEWRMGLTSVLSLLHDAFLIIAFFSIFRLEVDVTFIAAVLTIIGYSI 644

Query: 735 NDKVVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           ND +V +DR+R+N++      T      +++ SI +T+ RS+ T +   I V+ + + G 
Sbjct: 645 NDTIVTFDRVRENLRKLKLITTPEQIDQIVNSSIRQTMTRSINTVLTVLIVVIALMLLGA 704

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           S I +F++ +  G++    SS+FIA P+   +   + K +
Sbjct: 705 SSIFNFSVALLVGLISGVFSSVFIAVPLWGMLKKQQLKKS 744


>gi|315658093|ref|ZP_07910965.1| protein-export membrane protein SecDF [Staphylococcus lugdunensis
           M23590]
 gi|315496422|gb|EFU84745.1| protein-export membrane protein SecDF [Staphylococcus lugdunensis
           M23590]
          Length = 762

 Score =  305 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 177/696 (25%), Positives = 318/696 (45%), Gaps = 23/696 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ     RI +QL G ++ ++ R +L + A 
Sbjct: 54  GDKIDKKALQSTAQTLENRVNVLGVSEPRIQVEDPDRIRVQLAGVKNQNQARDVLSSQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++      N    G        +     Q   E  V       +      +  + K    
Sbjct: 114 LTIRDANDNVKLTGKDIVQGSAKQEFKQQ-TNEPTVTFKLKDRDKFKKVTEEISKKKENM 172

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +       +                           IN           G   ++ A  +
Sbjct: 173 MVVWLDYEKGDSYHKELQKKNENDRKYVSAASVNQPINSDSVEISGGFHGQEGVKKAKQI 232

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           + +L AGSLP+KL+ +   +VGA  G D++ K   A   G+ +I LFM+  Y   G VA 
Sbjct: 233 SELLNAGSLPVKLDELTSTSVGAQFGQDALDKTIFASFIGIAVIYLFMVGFYRLPGFVAI 292

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 293 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 352

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R ++
Sbjct: 353 YTKANRSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 412

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++     K        +     D                  F++     +G+SIL  I
Sbjct: 413 SLLVSSNYFKKKFWLFGVKKKQRHDINEGKDVHDLKTSFERWNFVKLAKPLIGLSILILI 472

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
               +L    LN GIDF  G ++ V +N  +  + V   ++ + +     Q     K   
Sbjct: 473 VGFVILSIFKLNLGIDFSSGSRVDVESNHSLSQAKVEKTMKDVGLKADEIQINGDGKKQA 532

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
             +           ++ +  K             +   V P I +EL +  +  +I ++I
Sbjct: 533 TIMFKHDLAKKDIAKLNDKFK------NEFGHSPSVNTVSPVIGQELAKNALKALIYASI 586

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L ++  L+ D    +  F+LF IE ++T +AAVLT+IGYS+ND +
Sbjct: 587 GIIIYVSLRFEWRMGLSSVLALLHDAFMIVAVFSLFRIEVDITFIAAVLTIIGYSINDTI 646

Query: 739 VVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+       S     D++++SI +T+ RS+ T +   + V+ + ++G   I 
Sbjct: 647 VTFDRVRENLHKLKVITSPEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILLFGAPSIF 706

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +F++ +  G++    SSIFIA P+   +   + K +
Sbjct: 707 NFSLALLVGLISGVFSSIFIAVPLWGIMKKRQLKKS 742



 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 89/252 (35%), Gaps = 4/252 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L           + + N    +    +  N     + +       G    +         
Sbjct: 177 LDYEKGDSYHKELQKKNENDRKYVSAASVNQPINSDSVEISGGFHGQEGVKKAKQISELL 236

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               +        +  VG +  ++ + K I    I    + +++   ++      AI  L
Sbjct: 237 NAGSLPVKLDELTSTSVGAQFGQDALDKTIFASFIGIAVIYLFMVGFYRLP-GFVAIIAL 295

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
              I  TL  F        L  +AA++  +G +V+  +++Y+R++  +++     + +  
Sbjct: 296 TTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI---GRTLKQA 352

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             K+   +      +++   I+   +  +G S +  FA  +  GI++   +++F++  +L
Sbjct: 353 YTKANRSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLL 412

Query: 821 LFIYDWRAKNAR 832
             +        +
Sbjct: 413 SLLVSSNYFKKK 424


>gi|317499048|ref|ZP_07957329.1| protein-export membrane protein SecD [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316893698|gb|EFV15899.1| protein-export membrane protein SecD [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 764

 Score =  305 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 196/684 (28%), Positives = 334/684 (48%), Gaps = 12/684 (1%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  + +   V    ++ ++  +++R++     E+ + + G  RI I++PG  D +++   
Sbjct: 55  ITYEVDGKNVSDSDMKDTVYKLQKRVEGYST-EAEVYQEGKDRINIEIPGVTDANKILDE 113

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    +SF        KK      +   D+      V+    ++  +            
Sbjct: 114 LGKPGTLSFAVQKQVKVKKNGKTTTQTTLDTVLTGQNVKKAKAVTNQNQTT-------GK 166

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            + +V + FD  G + F + T+ NIGKP+ ++ D +V++AP + +AI  G+  I G  + 
Sbjct: 167 KEYLVALEFDAKGTKAFAKATKANIGKPIYIIYDNQVISAPNVQEAITKGECTIDGMESY 226

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA+ +R GSLP+KLN +    V A LG ++I     A V G VL+ L MI  Y  
Sbjct: 227 EAAENLASSIRIGSLPVKLNELRSNVVSAKLGVNAIQTTVKAGVIGFVLVCLIMIAFYAV 286

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++A  ++ + +++ L  L+   ATLTLP +AGI+LGIG+AVD+N+++  RI+EE    
Sbjct: 287 PGMIACVALAIYMLMMLLALNGFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGAG 346

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S   ++  GF +A S I D N+T LIA +VL+F G G V+GFA T+G+S+LISMFTA+ 
Sbjct: 347 KSTGAAIKSGFGKAASAIIDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALV 406

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           I R ++     +                       +   A    + +  L ++       
Sbjct: 407 ISRFLVYAAYHFGLRDKKWYGKPRTIKTRDFVRTGKKYVAVAGVIILIGLAALPMNRSKI 466

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              LNY ++F GG    +       ++             +S       +      Q   
Sbjct: 467 GSILNYDLEFSGGTASTITFKDDQKVNDSLEKQVVKAYEKVSKSTSVQSQKVKANNQMVV 526

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                     + ++  + +         TE +   IS E+ R   + V+ISAI MLIYI 
Sbjct: 527 KSVELNLSQRKQIENTLKK-DYKVKSVTTENISSTISNEMQRDAFISVVISAICMLIYIA 585

Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           IRFK   F   AI  LI D+      +++  +    T +A +LT+IGYS+N  +V++DR+
Sbjct: 586 IRFKDVKFGSSAIIALINDVLVVFAAYSVGRLSVGGTFIACMLTIIGYSINSTIVIFDRI 645

Query: 745 RKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+N+KL    T    + L+++SI+ TL R++ TS+  F+ VL + + G S +  FA+ + 
Sbjct: 646 RENLKLQTIRTRDDIKALVNQSISSTLVRTINTSLTTFVMVLALFICGVSSLREFALALM 705

Query: 803 FGIVVAASSSIFIAAPILLFIYDW 826
            G++  A SS+F+  P+   +   
Sbjct: 706 VGVIGGAFSSVFLTGPLWYMMKTR 729



 Score =  111 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 74/180 (41%), Gaps = 4/180 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +V  K+    I+  +   +I  + + + I I F     + A   L + +   L    
Sbjct: 249 RSNVVSAKLGVNAIQTTVKAGVIGFVLVCL-IMIAFYAVPGMIACVALAIYMLMMLLALN 307

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F     L  +A ++  IG +V+  V++Y R+++ +       S    I     +     
Sbjct: 308 GFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGA---GKSTGAAIKSGFGKAASAI 364

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+VL +   G   +  FA  +   ++++  +++ I+  ++   Y +  ++ +
Sbjct: 365 IDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALVISRFLVYAAYHFGLRDKK 424



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           +IL   +C  G  I       +            + I LGLDL GG  +  EVD  +  +
Sbjct: 14  LILLIALCVFGAFITTKGITKK-------KIGRASNIELGLDLAGGVSITYEVDGKNVSD 66

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             ++    +L+  ++         ++ +++I +          I D++  
Sbjct: 67  SDMKDTVYKLQKRVEGYSTEAEVYQEGKDRINIEIPGVTDANKILDELGK 116


>gi|167766767|ref|ZP_02438820.1| hypothetical protein CLOSS21_01275 [Clostridium sp. SS2/1]
 gi|167711521|gb|EDS22100.1| hypothetical protein CLOSS21_01275 [Clostridium sp. SS2/1]
          Length = 764

 Score =  305 bits (779), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 196/684 (28%), Positives = 334/684 (48%), Gaps = 12/684 (1%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  + +   V    ++ ++  +++R++     E+ + + G  RI I++PG  D +++   
Sbjct: 55  ITYEVDGKNVSDSDMKDTVYKLQKRVEGYST-EAEVYQEGKDRINIEIPGVTDANKILDE 113

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    +SF        KK      +   D+      V+    ++  +            
Sbjct: 114 LGKPGTLSFAVQKQVKVKKNGKTTTQTTLDTVLTGQNVKKAKAVTNQNQTT-------GK 166

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            + +V + FD  G + F + T+ NIGKP+ ++ D +V++AP + +AI  G+  I G  + 
Sbjct: 167 KEYLVALEFDAKGTKAFAKATKANIGKPIYIIYDNQVISAPNVQEAITKGECTIDGMESY 226

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA+ +R GSLP+KLN +    V A LG ++I     A V G VL+ L MI  Y  
Sbjct: 227 EAAENLASSIRIGSLPVKLNELRSNVVSAKLGVNAIQTTVKAGVIGFVLVCLIMIAFYAV 286

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++A  ++ + +++ L  L+   ATLTLP +AGI+LGIG+AVD+N+++  RI+EE    
Sbjct: 287 PGVIACVALAIYMLMMLLALNGFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGAG 346

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S   ++  GF +A S I D N+T LIA +VL+F G G V+GFA T+G+S+LISMFTA+ 
Sbjct: 347 KSTGAAIKSGFGKAASAIIDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALV 406

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           I R ++     +                       +   A    + +  L ++       
Sbjct: 407 ISRFLVYAAYHFGLHDKKWYGKPRTIKTRDFVRTGKKYVAVAGVIILIGLAALPMNRSKI 466

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              LNY ++F GG    +       ++             +S       +      Q   
Sbjct: 467 GSILNYDLEFSGGTASTITFKDDQKVNDSLEKQVVKAYEKVSKSTSVQSQKVKANNQMVV 526

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                     + ++  + +         TE +   IS E+ R   + V+ISAI MLIYI 
Sbjct: 527 KSVELNLSQRKQIENTLKK-DYKVKSVTTENISSTISNEMQRDAFISVVISAICMLIYIA 585

Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           IRFK   F   AI  LI D+      +++  +    T +A +LT+IGYS+N  +V++DR+
Sbjct: 586 IRFKDVKFGSSAIIALINDVLVVFAAYSVGRLSVGGTFIACMLTIIGYSINSTIVIFDRI 645

Query: 745 RKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+N+KL    T    + L+++SI+ TL R++ TS+  F+ VL + + G S +  FA+ + 
Sbjct: 646 RENLKLQTIRTRDDIKALVNQSISSTLVRTINTSLTTFVMVLALFICGVSSLREFALALM 705

Query: 803 FGIVVAASSSIFIAAPILLFIYDW 826
            G++  A SS+F+  P+   +   
Sbjct: 706 VGVIGGAFSSVFLTGPLWYMMKTR 729



 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 73/180 (40%), Gaps = 4/180 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +V  K+    I+  +   +I  + + + I I F     + A   L + +   L    
Sbjct: 249 RSNVVSAKLGVNAIQTTVKAGVIGFVLVCL-IMIAFYAVPGVIACVALAIYMLMMLLALN 307

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F     L  +A ++  IG +V+  V++Y R+++ +       S    I     +     
Sbjct: 308 GFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGA---GKSTGAAIKSGFGKAASAI 364

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+VL +   G   +  FA  +   ++++  +++ I+  ++   Y +   + +
Sbjct: 365 IDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALVISRFLVYAAYHFGLHDKK 424



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           +IL   +C  G  I       +            + I LGLDL GG  +  EVD  +  +
Sbjct: 14  LILLIALCVFGAFITTKGITKK-------KIGRASNIELGLDLAGGVSITYEVDGKNVSD 66

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             ++    +L+  ++         ++ +++I +          I D++  
Sbjct: 67  SDMKDTVYKLQKRVEGYSTEAEVYQEGKDRINIEIPGVTDANKILDELGK 116


>gi|196250104|ref|ZP_03148798.1| protein-export membrane protein SecD [Geobacillus sp. G11MC16]
 gi|196210288|gb|EDY05053.1| protein-export membrane protein SecD [Geobacillus sp. G11MC16]
          Length = 750

 Score =  304 bits (778), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 185/689 (26%), Positives = 328/689 (47%), Gaps = 27/689 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    ++ ++  + +RI+ +G+SE  +   G +RI +QL G +D +  R++L T AK
Sbjct: 54  GDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGENRIRVQLAGVKDQNEAREILATQAK 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + S          +++                  P   
Sbjct: 114 LTFRDVNDNVLMDGSDLVQGGAKLSFDENGQPSVAIKLKDADKFRQVTEKVYNMGPPNNI 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +              ++          D + ++A  +NQ        I GNFT++ A  L
Sbjct: 174 LVIWLDFEEGVDSYQKEAGK------ADPKFISAASVNQVFNQTDVSIVGNFTVKEAQQL 227

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AG+LP++L+ +   +VGA  G +++     A + G+  I LFMI  Y   G++A 
Sbjct: 228 ADLLNAGALPVELHEIYSTSVGAQFGKNALQTTMLAGIIGVAAIFLFMIWFYRLPGVIAV 287

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + + L L L   +   LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +S+  +
Sbjct: 288 ITLSVYIYLILLLFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSMMSA 347

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G   +++TIFD+NIT +IA VVLF +G  +V+GFA  + +SI+ S  TA+   R ++
Sbjct: 348 FRAGNRGSFATIFDANITTIIAGVVLFIYGTSSVKGFATMLIISIVASFVTAVYGTRLLL 407

Query: 512 IFIIRYKKMKSIDINPLSRFFLI-------------PDCIAIQFMRARFWGVGISILFSI 558
             ++  + +         +   I                    F++        SI  +I
Sbjct: 408 GLLVSSRWLDKKPGYFGVKKSEILNIAETTDETEVPTKFDRWDFIKHSKKFFLFSIALTI 467

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             +  LF  GLN GIDF  G ++ V +++P++   +    E L            +    
Sbjct: 468 AGVISLFAMGLNLGIDFTSGTRIEVTSSQPIEAKELSDYFEQLGHKPEDVVLSGTDGKTG 527

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V       D     ++   +K             N   V P + ++L R  ++ V+IS+I
Sbjct: 528 VVRLIGVLDKQEIAKIKSELKTTYG------HEPNISTVSPVVGKQLARNALIAVLISSI 581

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++Y+ IRF+W  AL AI  L+ D    +  F+L  +E +LT +AAVLT+IGYS+ND +
Sbjct: 582 GIILYMTIRFEWRMALAAIIALLHDAFFIITVFSLTRLEVDLTFIAAVLTIIGYSINDTI 641

Query: 739 VVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R  M  +   T    R ++++++ +T  RS+ T +    +V+ + ++G   I +
Sbjct: 642 VTFDRIRDLMKKRKVKTVDDLRHIVNRALQQTFTRSINTVLTVLFTVIALLLFGSEAIRN 701

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F + +  G++    SS+FIAA + L    
Sbjct: 702 FNLALLAGLLCGVYSSLFIAAQLWLVWKG 730



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 43  RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97
            I LGLDL+GG  ++ EV      D      LQ     L   +   G+    +     N+
Sbjct: 31  NIKLGLDLQGGFEVLYEVKPAKKGDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGENR 90

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
           I +  A  + +    + +    +     +N + 
Sbjct: 91  IRVQLAGVKDQNEAREILATQAKLTFRDVNDNV 123


>gi|269216135|ref|ZP_06159989.1| putative protein-export membrane protein [Slackia exigua ATCC
           700122]
 gi|269130394|gb|EEZ61472.1| putative protein-export membrane protein [Slackia exigua ATCC
           700122]
          Length = 882

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 161/858 (18%), Positives = 305/858 (35%), Gaps = 110/858 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R N WL+I   ++    + + +P               P++RI+ GLD++GG  +VL   
Sbjct: 18  RRNLWLLIATIVLVLGSIFLFMP---------------PQDRINQGLDIQGGLSVVLSAN 62

Query: 61  --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTL 117
             D  D  +  ++     + S +   G     ++ Q  N+I +        +   + +  
Sbjct: 63  STDGSDVSSDDMEKSRSIIESRVNALGASEAVVQLQGDNQILVQIPGISDTQEALNTIGK 122

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIV--LSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +   ++L+     ++       E       +      + +   E +   +        
Sbjct: 123 TGKLEFARLDSFTDADVAKKIDAGEYMTQKTATDAYGTTLPTGESELAGMTVEPGTYTPI 182

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
           ++   I+R+   R             L    G     +   + P   K   +        
Sbjct: 183 VTGDDIERITVDRASETSADYAVNLALNSEGGKAFAEASTDLAPTKGKIVIILDGVVQSA 242

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                 + + +V I+G +                                          
Sbjct: 243 PAVQSAIPDGRVSITGNYTLDEAK------------------------------------ 266

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                        +         +  +F  E A  +   L   +L   + +     +   
Sbjct: 267 -------------SLQTVLESGSLPIDFEFEQAQTVGPTLGQDALHSGVLVAAVGLLLVM 313

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           L     Y+G   I A  +L+   + +                  +   L  L   +L+L 
Sbjct: 314 LYLLVFYRGLGFITAAAMLVFAALYLG-----------------ILAGLSRLGLFSLSLA 356

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL IG+A DS+IL  ER REE R  +SV  +   G      T  D+++  L++ +
Sbjct: 357 GIAGIVLTIGMAADSSILTLERFREEIRMGRSVRAASMTGVRHGILTSIDADLVTLVSAL 416

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF---- 531
            LFF    +V+GF +T+ L I   +   +     ++  +      +      +       
Sbjct: 417 TLFFLASASVKGFGLTLALGIFCDIVMMLLFKAPIIRLLAPRLIARHPGFWGVKDCENAA 476

Query: 532 ---------------FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                                     ++ R   + ++ +  +  + L+   G+ +GI+F 
Sbjct: 477 PYFEGSSVAPEGYKIPGRFIKRDFAILKYRKVTLALAAVAIVAVVGLIGIRGIEFGIEFV 536

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           GG  +       V    +R        GD   Q    +      ++     +   T V  
Sbjct: 537 GGTSVSFHDTGDVTTEQLRDAFADAGEGDAVIQTTSADGAEGFLVRTTTTSAEDATAVAN 596

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
            V                  +GP     +I+  ++  ++S + ++IYI +RF+ +   + 
Sbjct: 597 QVAGSFGWSTDSFE---VTTIGPDWGTSVIKASVLAFLVSLVLIIIYISLRFRDYKMGVT 653

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A+  L+ D+    G +AL G E     +AA+LT++GYS+ D VVV+ R+ +NMK  +   
Sbjct: 654 AVVALLHDLILVFGIYALLGREVTPNTIAAILTILGYSLYDTVVVFHRINENMKDESIKC 713

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           +F  + + SINE L RS+ TS+ + I V+ M ++GG  +  FA+ M  G+V  A SS  I
Sbjct: 714 TFMSMANHSINEVLMRSMNTSITSLIPVVAMLLFGGETLKDFALAMTIGLVAGAYSSYAI 773

Query: 816 AAPILLFIYDWRAKNARI 833
           A P+         + AR+
Sbjct: 774 ATPLYAVWKTTEERFARL 791


>gi|331090635|ref|ZP_08339486.1| hypothetical protein HMPREF9477_00129 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401075|gb|EGG80670.1| hypothetical protein HMPREF9477_00129 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 712

 Score =  304 bits (777), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 201/686 (29%), Positives = 334/686 (48%), Gaps = 25/686 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   ++     +  ++  +++R++Q        Q  G  RI I++PG  D +++ + 
Sbjct: 51  ITYQAKGEKPTEKEMSDTVYKLQKRVEQYSTEAGVYQ-EGDDRISIEIPGVTDANKVLEE 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    + F                    DS+GN  L    V+ +   +    +      
Sbjct: 110 LGKPGSLEFQ-------------------DSEGNVVLDGTDVKSATAQIQEDNSGNKKNM 150

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
               V +   + G ++F E T  N+GKP+++V DG+V+++P +N AI +G+A I G+FT 
Sbjct: 151 ----VSLEMTKEGKKKFAEATEKNLGKPISIVYDGQVISSPTVNSAITNGQAVIEGSFTY 206

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA+ +R G L ++L  +    VGA LG ++I     A   GL +I +FM  +Y  
Sbjct: 207 EEAEELASTIRIGGLQVELEEINSSVVGAQLGEEAISTSLMAGAIGLAIIFVFMCAVYLL 266

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL +  ++ +   + L LL+    TLTLP IAGI+LGIG+AVD+N+++  R++EE  + 
Sbjct: 267 PGLASSIALCIYTGIILVLLNAFDITLTLPGIAGIILGIGMAVDANVIIFARVKEELGEG 326

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           ++V  +L  GF +A S I D NIT LIA +VL   G G V+GFA T+ L I++SMFTA+ 
Sbjct: 327 KNVKTALKKGFQKALSAILDGNITTLIAALVLGLKGTGTVKGFAQTLALGIVVSMFTALV 386

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           + R ++                      I      +   A    + +S   ++       
Sbjct: 387 VTRIIIFAFYAVGLKSEKLYGVQKERKTINFLGKRKICFAVSIALALSGFVAMGVQKSQG 446

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              LNY ++FKGG    V  N    +  + S +  +       +N   +K    +     
Sbjct: 447 NDILNYSLEFKGGTSTNVTFNEDFSIKELDSKVTPVIEKVTGDKNVQMQKVKGTKQVIIK 506

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             ++   +   + K  +              +   +S E+    IV V+I+ + MLIYIW
Sbjct: 507 TQALDLDKREALNKALVDNFKVDEKKITYSNISSTVSSEMRSDAIVAVLIATVCMLIYIW 566

Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           +RFK + FA  AI  L+ D+   L F+A+  +    T +A +LT++GYS+N  +V++DR+
Sbjct: 567 LRFKDFRFASSAIIALLHDVLVVLAFYAIARVSVGNTFIACMLTIVGYSINATIVIFDRI 626

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ +K      S  D+++KSI +TL RS+YTS   F+ V  + V G S +  FA P+  G
Sbjct: 627 REELKAGRRKDSLEDVVNKSITQTLTRSIYTSFTTFVMVAVLYVLGVSSVKEFAAPLMVG 686

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830
           +VV A SS+ I   +   +     K 
Sbjct: 687 VVVGAYSSVCITGSLWYVLKKKFVKK 712



 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 77/179 (43%), Gaps = 4/179 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
            +VG ++  E I   ++   I    + +++   +     L +   L +     L     F
Sbjct: 231 SVVGAQLGEEAISTSLMAGAIGLAIIFVFMCAVY-LLPGLASSIALCIYTGIILVLLNAF 289

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I   L  +A ++  IG +V+  V+++ R+++ +       + +  + K   + L   + 
Sbjct: 290 DITLTLPGIAGIILGIGMAVDANVIIFARVKEELGE---GKNVKTALKKGFQKALSAILD 346

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++   I+ L + + G   +  FA  +A GIVV+  +++ +   I+   Y    K+ ++
Sbjct: 347 GNITTLIAALVLGLKGTGTVKGFAQTLALGIVVSMFTALVVTRIIIFAFYAVGLKSEKL 405



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/155 (9%), Positives = 49/155 (31%), Gaps = 2/155 (1%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             I LGLDL GG  +  +   +      +     +L+  +++        ++  ++I++ 
Sbjct: 37  KNIKLGLDLAGGVSITYQAKGEKPTEKEMSDTVYKLQKRVEQYSTEAGVYQEGDDRISIE 96

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                    + +++             +   +     +          N+ ++    ++E
Sbjct: 97  IPGVTDANKVLEELGKPGSLEFQDSEGNVVLDGTDVKSATAQIQE--DNSGNKKNMVSLE 154

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196
            + E  ++  +    +      +     +I  P  
Sbjct: 155 MTKEGKKKFAEATEKNLGKPISIVYDGQVISSPTV 189


>gi|296331690|ref|ZP_06874159.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305675351|ref|YP_003867023.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296151285|gb|EFG92165.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305413595|gb|ADM38714.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 737

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 194/694 (27%), Positives = 338/694 (48%), Gaps = 28/694 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++E + +R + +G+SE  IQ  G+ RI +QL G  + +R R++L T A+
Sbjct: 53  GDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNDRIRVQLAGVTNQNRAREILATEAQ 112

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           +SF              G   + +     Y  +    I  I L  A    +       V 
Sbjct: 113 LSFRDTNDKELLN----GSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKK---VM 165

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
                     + +  + +  K        + ++AP ++Q + +    I G FT++ A  L
Sbjct: 166 KMAPNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSQELNTTDVTIEGQFTVQEAKDL 225

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A++L AG+LP+KL      +VGA  G  ++++   A + G+ +I LFM+  Y   G +A 
Sbjct: 226 ASILNAGALPVKLTEKYSTSVGAQFGQQALHETVFAGIVGIAIIFLFMLFYYRLPGFIAV 285

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + + +TL +   + A LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +SV  +
Sbjct: 286 ITLSVYIYITLQVFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+++TI D+N+T +IA VVLF FG  +V+GFA  + LSIL S  TA+ + R ++
Sbjct: 346 FRSGNRRSFATILDANVTTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405

Query: 512 IFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILFSI 558
             ++  + +             I                    F   R +   IS   +I
Sbjct: 406 ALLVESRWLDRKKGWFGVNKKYIMNIQDTDENTEPHTPFQKWDFTSKRKYFFIISSAITI 465

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I +L    LN GIDF  G ++ V ++  +    V  + ESL +   +      +KN  
Sbjct: 466 AGIIILLVFKLNLGIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTIVLSGEKKNIG 525

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V       D     +V    K          T  N   V P + +EL R  +  + I++I
Sbjct: 526 VARFVGVPDKETIAKVKTHFK------DKYGTEPNVSTVSPTVGKELARNALYALAIASI 579

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF++  A+ AI +L+ D    +  F++  +E ++T +AA+LT+IGYS+ND +
Sbjct: 580 GIIIYVSIRFEYRMAIAAIASLLYDAFFIVTVFSITRLEVDVTFIAAILTIIGYSINDTI 639

Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R++MK            +++ S+ +T  RS+ T +   I V+ + ++G S I +
Sbjct: 640 VTFDRIREHMKKRKPKTFADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFGASSITN 699

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           F++ +  G++    SS++IAA I L       K 
Sbjct: 700 FSVALLVGLLTGVYSSLYIAAQIWLVWKGKELKK 733



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +          G    Q             +    T + +  VG +  ++ + + +   
Sbjct: 203 SQELNTTDVTIEGQFTVQEAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHETVFAG 262

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I+    + +++   ++      A+ TL + I  TL  F        L  +AA++  +G +
Sbjct: 263 IVGIAIIFLFMLFYYRLP-GFIAVITLSVYIYITLQVFDWMNAVLTLPGIAALILGVGMA 321

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  ++ Y+R+++ +KL     S R         +    +  ++   I+ + + ++G S 
Sbjct: 322 VDANIITYERIKEELKL---GKSVRSAFRSGNRRSFATILDANVTTIIAAVVLFIFGTSS 378

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  FA  +   I+ +  +++F++  +L  + + R  + +
Sbjct: 379 VKGFATMLILSILTSFITAVFLSRFLLALLVESRWLDRK 417



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/419 (12%), Positives = 118/419 (28%), Gaps = 22/419 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +  +  +  IG  +                    N I+LGLDL+GG  ++ +V
Sbjct: 1   MKKGRL-IAFFLFVLLIGTGLGYFTKPA------------ANNITLGLDLQGGFEVLYDV 47

Query: 61  DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
                 D      L    + L       G+   +++ +  ++I +  A    +    + +
Sbjct: 48  QPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNDRIRVQLAGVTNQNRAREIL 107

Query: 116 TLFLQGVNSKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
               Q      N       + LV    K+     +   I  +     ++  E+ ++ +  
Sbjct: 108 ATEAQLSFRDTNDKELLNGSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKKVMKM 167

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
              ++  I          +   +++  +       + +++   V                
Sbjct: 168 APNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSQELNTTDVTIEGQFTVQEAKDLAS 227

Query: 234 RDSDGN--QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             + G     L E      G        +         + I F  M            I 
Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHETVFAGIVGIAIIFLFMLFYYRLPGFIAVIT 287

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             + + +  +V         +P   A I G      A I+        L +  ++     
Sbjct: 288 LSVYIYITLQVFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            G      +I       +   V++ +F       +  +   SI  + I  + L   L A
Sbjct: 348 SGNRRSFATILDANVTTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLA 406


>gi|321312293|ref|YP_004204580.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis BSn5]
 gi|320018567|gb|ADV93553.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis BSn5]
          Length = 737

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 197/694 (28%), Positives = 339/694 (48%), Gaps = 28/694 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++E + +R + +G+SE  IQ  G++RI +QL G  + +R R++L T A+
Sbjct: 53  GDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILATEAQ 112

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           +SF              G   + +     Y  +    I  I L  A    +       V 
Sbjct: 113 LSFRDTNDKELLN----GSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKK---VM 165

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
                     + +  + +  K        + ++AP ++Q + +    I G FT++ A  L
Sbjct: 166 KMAPNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSQELNTTDVTIEGQFTVQEAKDL 225

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A++L AG+LP+KL      +VGA  G  +++    A + G+ +I LFM+  Y   GL+A 
Sbjct: 226 ASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAV 285

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + + +TL +   + A LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +SV  +
Sbjct: 286 ITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+++TIFD+NIT +IA VVLF FG  +V+GFA  + LSIL S  TA+ + R ++
Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405

Query: 512 IFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILFSI 558
             ++  + +             I                    F   R +    S   ++
Sbjct: 406 ALLVESRWLDRKKGWFGVNKKHIMDIQDTDENTEPHTPFQKWDFTSKRKYFFIFSSAVTV 465

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I +L    LN GIDF  G ++ V ++  +    V  + ESL +   +      + N  
Sbjct: 466 AGIIILLVFRLNLGIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTVVLSGEKSNIG 525

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V       D     +V    K K           N   V P + +EL R  +  V I++I
Sbjct: 526 VARFVGVPDKETIAKVKTYFKDKYGSE------PNVSTVSPTVGKELARNALYAVAIASI 579

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF++  A+ AI +L+ D    + FF++  +E ++T +AA+LT+IGYS+ND +
Sbjct: 580 GIIIYVSIRFEYKMAIAAIASLLYDAFFIVTFFSITRLEVDVTFIAAILTIIGYSINDTI 639

Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R++MK            +++ S+ +T  RS+ T +   I V+ + ++G S I +
Sbjct: 640 VTFDRVREHMKKRKPKTFADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFGASSITN 699

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           F+I +  G++    SS++IAA I L       K 
Sbjct: 700 FSIALLVGLLTGVYSSLYIAAQIWLAWKGRELKK 733



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 87/219 (39%), Gaps = 4/219 (1%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +          G    Q             +    T + +  VG +  ++ +   +   
Sbjct: 203 SQELNTTDVTIEGQFTVQEAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAG 262

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I+    + +++   ++    L A+ TL + I  TL  F        L  +AA++  +G +
Sbjct: 263 IVGIAIIFLFMLFYYRLP-GLIAVITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMA 321

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  ++ Y+R+++ +KL     S R         +       ++   I+ + + ++G S 
Sbjct: 322 VDANIITYERIKEELKL---GKSVRSAFRSGNRRSFATIFDANITTIIAAVVLFIFGTSS 378

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  FA  +   I+ +  +++F++  +L  + + R  + +
Sbjct: 379 VKGFATMLILSILTSFITAVFLSRFLLALLVESRWLDRK 417



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 54/419 (12%), Positives = 119/419 (28%), Gaps = 22/419 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +  +  +  IG  +                    N I+LGLDL+GG  ++ +V
Sbjct: 1   MKKGRL-IAFFLFVLLIGTGLGYFTKPA------------ANNITLGLDLQGGFEVLYDV 47

Query: 61  DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
                 D      L    + L       G+   +++ +  N+I +  A    +    + +
Sbjct: 48  QPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107

Query: 116 TLFLQGVNSKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
               Q      N       + LV    K+     +   I  +     ++  E+ ++ +  
Sbjct: 108 ATEAQLSFRDTNDKELLNGSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKKVMKM 167

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
              ++  I          +   +++  +       + +++   V                
Sbjct: 168 APNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSQELNTTDVTIEGQFTVQEAKDLAS 227

Query: 234 RDSDGN--QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             + G     L E      G        +         + I F  M            I 
Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAVIT 287

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             + + +  ++         +P   A I G      A I+        L +  ++     
Sbjct: 288 LSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            G      +I+      +   V++ +F       +  +   SI  + I  + L   L A
Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLA 406


>gi|138896150|ref|YP_001126603.1| bifunctional preprotein translocase subunit SecD/SecF [Geobacillus
           thermodenitrificans NG80-2]
 gi|134267663|gb|ABO67858.1| Protein-export membrane protein [Geobacillus thermodenitrificans
           NG80-2]
          Length = 750

 Score =  304 bits (777), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 185/689 (26%), Positives = 328/689 (47%), Gaps = 27/689 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    ++ ++  + +RI+ +G+SE  +   G +RI +QL G +D +  R++L T AK
Sbjct: 54  GDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGENRIRVQLAGVKDQNEAREILATQAK 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V  N    G        + S          +++                  P   
Sbjct: 114 LTFRDVNDNVLMDGSDLVQGGAKLSFDENGQPSVAIKLKDADKFRQVTEKVYNMGPPNNI 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +              ++          D + ++A  +NQ        I GNFT++ A  L
Sbjct: 174 LVIWLDFEEGVDSYQKEAGK------ADPKFISAASVNQVFNQTDVSIVGNFTVKEAQQL 227

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AG+LP++L+ +   +VGA  G +++     A + G+  I LFMI  Y   G++A 
Sbjct: 228 ADLLNAGALPVELHEIYSTSVGAQFGKNALQTTMLAGIIGVAAIFLFMIWFYRLPGVIAV 287

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + + L L L   +   LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +S+  +
Sbjct: 288 ITLSVYIYLILLLFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSMMSA 347

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G   +++TIFD+NIT +IA VVLF +G  +V+GFA  + +SI+ S  TA+   R ++
Sbjct: 348 FRAGNRGSFATIFDANITTIIAGVVLFIYGTSSVKGFATMLIISIVASFVTAVYGTRLLL 407

Query: 512 IFIIRYKKMKSIDINPLSRFFLI-------------PDCIAIQFMRARFWGVGISILFSI 558
             ++  + +         +   I                    F++        SI  +I
Sbjct: 408 GLLVSSRWLDKKPGYFGVKKSEILNIAETTDETEVPTKFDRWDFIKHSKKFFLFSIALTI 467

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             +  LF  GLN GIDF  G ++ V +++P++   +    E L            +    
Sbjct: 468 AGVISLFAMGLNLGIDFTSGTRIEVTSSQPIEAKELSDYFEQLGHKPEDVVLSGTDGKTG 527

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V       D     ++   +K             N   V P + ++L R  ++ V+IS+I
Sbjct: 528 VVRLIGVLDKQEIAKIKSELKTTYG------HEPNISTVSPVVGKQLARNALIAVLISSI 581

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++Y+ IRF+W  AL AI  L+ D    +  F+L  +E +LT +AAVLT+IGYS+ND +
Sbjct: 582 GIILYVTIRFEWRMALAAIIALLHDAFFIITVFSLTRLEVDLTFIAAVLTIIGYSINDTI 641

Query: 739 VVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R  M  +   T    R ++++++ +T  RS+ T +    +V+ + ++G   I +
Sbjct: 642 VTFDRIRDLMKKRKVKTVDDLRHIVNRALQQTFTRSINTVLTVLFTVIALLLFGSEAIRN 701

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F + +  G++    SS+FIAA + L    
Sbjct: 702 FNLALLAGLLCGVYSSLFIAAQLWLVWKG 730



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 43  RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97
            I LGLDL+GG  ++ EV      D      LQ     L   +   G+    +     N+
Sbjct: 31  NIKLGLDLQGGFEVLYEVKPAKKGDKIDQETLQSTVSALNKRINVLGVSEPRVDIEGENR 90

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
           I +  A  + +    + +    +     +N + 
Sbjct: 91  IRVQLAGVKDQNEAREILATQAKLTFRDVNDNV 123


>gi|291560707|emb|CBL39507.1| protein translocase subunit secF/protein translocase subunit secD
           [butyrate-producing bacterium SSC/2]
          Length = 764

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 196/684 (28%), Positives = 334/684 (48%), Gaps = 12/684 (1%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  + +   V    ++ ++  +++R++     E+ + + G  RI I++PG  D +++   
Sbjct: 55  ITYEVDGKNVSDSDMKDTVYKLQKRVEGYST-EAEVYQEGKDRINIEIPGVTDANKILDE 113

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    +SF        KK      +   D+      V+    ++  +            
Sbjct: 114 LGKPGTLSFTVQKQVKVKKNGKTTTQTTLDTVLTGQNVKKAKAVTNQNQTT-------GK 166

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            + +V + FD  G + F + T+ NIGKP+ ++ D +V++AP + +AI  G+  I G  + 
Sbjct: 167 KEYLVALEFDAKGTKAFAKATKANIGKPIYIIYDNQVISAPNVQEAITKGECTIDGMESY 226

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA+ +R GSLP+KLN +    V A LG ++I     A V G VL+ L MI  Y  
Sbjct: 227 EAAENLASSIRIGSLPVKLNELRSNVVSAKLGVNAIQTTVKAGVIGFVLVCLIMIAFYAV 286

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++A  ++ + +++ L  L+   ATLTLP +AGI+LGIG+AVD+N+++  RI+EE    
Sbjct: 287 PGMIACVALAIYMLMMLLALNGFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGAG 346

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S   ++  GF +A S I D N+T LIA +VL+F G G V+GFA T+G+S+LISMFTA+ 
Sbjct: 347 KSTGAAIKSGFGKAASAIIDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALV 406

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           I R ++     +                       +   A    + +  L ++       
Sbjct: 407 ISRFLVYAAYHFGLRDKKWYGKPRTIKTRDFVRTGKKYVAVAGVIILIGLAALPMNRSKI 466

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              LNY ++F GG    +       ++             +S       +      Q   
Sbjct: 467 GSILNYDLEFSGGTASTITFKDDQKVNDSLEKQVVKAYEKVSKSTSVQSQKVKANNQMVV 526

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                     + ++  + +         TE +   IS E+ R   + V+ISAI MLIYI 
Sbjct: 527 KSVELNLSQRKQIESTLKK-DYKVKSVTTENISSTISNEMQRDAFISVVISAICMLIYIA 585

Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           IRFK   F   AI  LI D+      +++  +    T +A +LT+IGYS+N  +V++DR+
Sbjct: 586 IRFKDVKFGSSAIIALINDVLVVFAAYSVGRLSVGGTFIACMLTIIGYSINSTIVIFDRI 645

Query: 745 RKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+N+KL    T    + L+++SI+ TL R++ TS+  F+ VL + + G S +  FA+ + 
Sbjct: 646 RENLKLQTIRTRDDIKALVNQSISSTLVRTINTSLTTFVMVLALFICGVSSLREFALALM 705

Query: 803 FGIVVAASSSIFIAAPILLFIYDW 826
            G++  A SS+F+  P+   +   
Sbjct: 706 VGVIGGAFSSVFLTGPLWYMMKTR 729



 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 74/180 (41%), Gaps = 4/180 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +V  K+    I+  +   +I  + + + I I F     + A   L + +   L    
Sbjct: 249 RSNVVSAKLGVNAIQTTVKAGVIGFVLVCL-IMIAFYAVPGMIACVALAIYMLMMLLALN 307

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F     L  +A ++  IG +V+  V++Y R+++ +       S    I     +     
Sbjct: 308 GFNATLTLPGLAGIILGIGMAVDANVIIYARIQEEIGA---GKSTGAAIKSGFGKAASAI 364

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+VL +   G   +  FA  +   ++++  +++ I+  ++   Y +  ++ +
Sbjct: 365 IDGNVTTLIAVLVLWFKGSGTVKGFAQTLGMSVLISMFTALVISRFLVYAAYHFGLRDKK 424



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 41/110 (37%), Gaps = 7/110 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           +IL   +C  G  I       +            + I LGLDL GG  +  EVD  +  +
Sbjct: 14  LILLIALCVFGAFITTKGITKK-------KIGRASNIELGLDLAGGVSITYEVDGKNVSD 66

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             ++    +L+  ++         ++ +++I +          I D++  
Sbjct: 67  SDMKDTVYKLQKRVEGYSTEAEVYQEGKDRINIEIPGVTDANKILDELGK 116


>gi|291485174|dbj|BAI86249.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis subsp. natto BEST195]
          Length = 737

 Score =  303 bits (776), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 196/694 (28%), Positives = 339/694 (48%), Gaps = 28/694 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++E + +R + +G+SE  IQ  G++RI +QL G  + +R R++L T A+
Sbjct: 53  GDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILATEAQ 112

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           +SF              G   + +     Y  +    I  I L  A    +       V 
Sbjct: 113 LSFRDTNDKELLN----GSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKK---VM 165

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
                     + +  + +  K        + ++AP +++ + +    I G FT++ A  L
Sbjct: 166 KMAPNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSKELNTTDVTIEGQFTVQEAKDL 225

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A++L AG+LP+KL      +VGA  G  +++    A + G+ +I LFM+  Y   GL+A 
Sbjct: 226 ASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAV 285

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + + +TL +   + A LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +SV  +
Sbjct: 286 ITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+++TIFD+NIT +IA VVLF FG  +V+GFA  + LSIL S  TA+ + R ++
Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405

Query: 512 IFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILFSI 558
             ++  + +             I                    F   R +    S   ++
Sbjct: 406 ALLVESRWLDRKKGWFGVNKKHIMDIQDTDENTEPHTPFQKWDFTSKRKYFFIFSSAVTV 465

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I +L    LN GIDF  G ++ V ++  +    V  + ESL +   +      + N  
Sbjct: 466 AGIIILLVFRLNLGIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTVVLSGEKSNIG 525

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V       D     +V    K K           N   V P + +EL R  +  V I++I
Sbjct: 526 VARFVGVPDKETIAKVKTYFKDKYGSE------PNVSTVSPTVGKELARNALYAVAIASI 579

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF++  A+ AI +L+ D    + FF++  +E ++T +AA+LT+IGYS+ND +
Sbjct: 580 GIIIYVSIRFEYKMAIAAIASLLYDAFFIVTFFSITRLEVDVTFIAAILTIIGYSINDTI 639

Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R++MK            +++ S+ +T  RS+ T +   I V+ + ++G S I +
Sbjct: 640 VTFDRVREHMKKRKPKTFADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFGASSITN 699

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           F+I +  G++    SS++IAA I L       K 
Sbjct: 700 FSIALLVGLLTGVYSSLYIAAQIWLAWKGRELKK 733



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 87/219 (39%), Gaps = 4/219 (1%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            K          G    Q             +    T + +  VG +  ++ +   +   
Sbjct: 203 SKELNTTDVTIEGQFTVQEAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAG 262

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I+    + +++   ++    L A+ TL + I  TL  F        L  +AA++  +G +
Sbjct: 263 IVGIAIIFLFMLFYYRLP-GLIAVITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMA 321

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  ++ Y+R+++ +KL     S R         +       ++   I+ + + ++G S 
Sbjct: 322 VDANIITYERIKEELKL---GKSVRSAFRSGNRRSFATIFDANITTIIAAVVLFIFGTSS 378

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  FA  +   I+ +  +++F++  +L  + + R  + +
Sbjct: 379 VKGFATMLILSILTSFITAVFLSRFLLALLVESRWLDRK 417



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/419 (11%), Positives = 113/419 (26%), Gaps = 22/419 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +  +  +  IG  +                    N I+LGLDL+GG  ++ +V
Sbjct: 1   MKKGRL-IAFFLFVLLIGTGLGYFTKPA------------ANNITLGLDLQGGFEVLYDV 47

Query: 61  DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
                 D      L    + L       G+   +++ +  N+I +  A    +    + +
Sbjct: 48  QPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107

Query: 116 TLFLQGVNSKLNVD---PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
               Q      N        +L+    ++      ++  +   +  A +      +    
Sbjct: 108 ATEAQLSFRDTNDKELLNGSDLVENGAKQTYDAKTNEPIVSIKLKDADKFGEVTKKVMKM 167

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
                              +   ++ P  +     +    +    +           +  
Sbjct: 168 APNNQLVIWMDYEKGDSFKKEVQKEHPKYVSAPNVSKELNTTDVTIEGQFTVQEAKDLAS 227

Query: 233 LRDSDGNQY-LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           + ++      L E      G        +         + I F  M            I 
Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAVIT 287

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             + + +  ++         +P   A I G      A I+        L +  ++     
Sbjct: 288 LSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            G      +I+      +   V++ +F       +  +   SI  + I  + L   L A
Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLA 406


>gi|311742284|ref|ZP_07716093.1| protein-export membrane protein SecD [Aeromicrobium marinum DSM
           15272]
 gi|311313912|gb|EFQ83820.1| protein-export membrane protein SecD [Aeromicrobium marinum DSM
           15272]
          Length = 765

 Score =  303 bits (776), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 199/725 (27%), Positives = 359/725 (49%), Gaps = 20/725 (2%)

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           + GV +     P +  L      +I       +  +  + + ++++E+IR R+D +G++E
Sbjct: 17  IAGVLALAFTQPAQLGLDLRGGTQIVFETQSTDRVEADAESTDRALEVIRGRVDALGVAE 76

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
            +I R G  RI+++LPG QDP    + +G TA++SFH+V+   +        + +   + 
Sbjct: 77  PSIARSGERRIIVELPGLQDPREAAETIGQTAQLSFHEVIQPVAPGQGAPEGQLVVPDEQ 136

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKT-HKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              L+   V + G  ++ A A    +   + VV++ F   G   + ++            
Sbjct: 137 GTRLLLGPVAVDGEGVSDAAATTVQQGLGEWVVNVDFAGPGRDGWNQLVAAACANTAGGQ 196

Query: 298 LDGRVLTAPVINQAIP---------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
               VL   +I+                 QI+GNFT ETA  L+ +++ G+LP+ L ++E
Sbjct: 197 RVAIVLDDQIISSPAVQPSLCASGGGNSTQITGNFTQETAEDLSVLIKGGALPVPLELIE 256

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           +R VGA LG  +I     A + G++L  LF++++Y   G +A  ++    ++   LL  +
Sbjct: 257 QRTVGATLGEAAIDASIEAAIIGIILTGLFIVLVYRVIGFLATLALASYALIAFGLLVGI 316

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV--FCSLDMGFSRAYSTIFDS 466
           GATLTLP +AG VL IGLA+D+N+LV ER REE  ++       +L  GFS+A+S I DS
Sbjct: 317 GATLTLPGLAGFVLAIGLAIDANVLVFERAREEYTEHPDHGLAPALKTGFSKAWSAILDS 376

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID-- 524
           N+T LIA  +LFF   G V+GF +T+ + ++ SM +A+ I R +  F ++   ++S    
Sbjct: 377 NVTTLIAAALLFFLASGPVKGFGVTLSIGVIASMVSALVIARVLTEFAVKRSVLRSNPGV 436

Query: 525 --INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             I+   R            MR     + I+   ++ SI  +   GL+ G++F GG  L 
Sbjct: 437 SGISRTGRIRQWLTESGPDLMRRSGTWLAITAAVAVVSIGGIVVRGLDLGVEFTGGRLLE 496

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                PVD+ V R  +          Q    +    V                  +++ +
Sbjct: 497 YSTGSPVDVEVAREAVSDAGFPRAIVQESSSDG---VTENITVRVEEISDDEAVAIEEAV 553

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            E+   ST    E++   + +EL  K ++   I+  A ++Y+  RF+W +A+ A  +++ 
Sbjct: 554 GEVGDGSTKIRDELLTASLGQELRNKALIAFAIAISAQMLYLSFRFRWTYAVAAQVSMVS 613

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   +G FA +G   +   +AAVL++IG +VND +V++DR+R+      T    R++++
Sbjct: 614 VVLTVVGIFAWWGKPIDGVFLAAVLSIIGLAVNDTIVIFDRIRERTAENVTR-PLREVVN 672

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +I +T+ R++ T + A   +  +AV GG  +  FAI +  G+ +   S+IF A+ + + 
Sbjct: 673 SAILQTIPRTINTGLGAIFILAALAVLGGDSLKDFAIALILGLSIGILSTIFTASALAIV 732

Query: 823 IYDWR 827
           + +  
Sbjct: 733 LEERW 737



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 62/246 (25%), Gaps = 31/246 (12%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD--- 64
             L ++    G+L                         LGLDLRGG+ +V E    D   
Sbjct: 9   RALAALAVIAGVLALAFT----------------QPAQLGLDLRGGTQIVFETQSTDRVE 52

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVN 123
                     + +R  +   G+   S+ +    +I +     +     A+ +    Q   
Sbjct: 53  ADAESTDRALEVIRGRVDALGVAEPSIARSGERRIIVELPGLQDPREAAETIGQTAQLSF 112

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID---QIGISEST 180
                +  + +       E  +V+      +++   +    E +        Q G+ E  
Sbjct: 113 H----EVIQPVAPGQGAPEGQLVVPDEQGTRLLLGPVAVDGEGVSDAAATTVQQGLGEWV 168

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           +    +                     T        VL +                 GN 
Sbjct: 169 VNVDFAGPGRDGWNQLV----AAACANTAGGQRVAIVLDDQIISSPAVQPSLCASGGGNS 224

Query: 241 YLVEDK 246
             +   
Sbjct: 225 TQITGN 230


>gi|325262045|ref|ZP_08128783.1| protein-export membrane protein SecDF [Clostridium sp. D5]
 gi|324033499|gb|EGB94776.1| protein-export membrane protein SecDF [Clostridium sp. D5]
          Length = 741

 Score =  303 bits (775), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 194/692 (28%), Positives = 332/692 (47%), Gaps = 10/692 (1%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   ++     ++ ++  +++R++Q    E+T+ + G  RI I++PG +D +++   
Sbjct: 51  ITYQVKGEKPSQSDMDDTIYKLQRRVEQYST-EATVYQEGEDRISIEIPGVKDANKILDE 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFG--VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           LG    + F +   +     +      ++  D    +   +  + ++G  +  A A    
Sbjct: 110 LGQPGSLYFIREKDSEGTANYSLDSSGKYKLDKTIEELQEDGSIVLNGTDVKNAQAATTQ 169

Query: 264 K---THKPVVDISFDEMGARRFFEVTRDNI--GKPLAVVLDGRVLTAPVINQAIPSGKAQ 318
                 + +V +SF + G  +F   T+  +   + +A+  DG +++ P +N  I  G+AQ
Sbjct: 170 DDLKNKENIVQLSFTKDGTEKFAAATKSAVAAKETIAIYYDGELISVPSVNTEIKDGEAQ 229

Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378
           ISG+ T E A  LA+ +R G L ++L  +    VGA LG ++I     A   GL L+ +F
Sbjct: 230 ISGSMTYEEADKLASTIRIGGLSLQLEELRSNVVGAQLGEEAISTSLKAGAIGLALVFIF 289

Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           M  +Y   GL A  ++ +   L L LL+    TLTLP IAGI+LGIG+AVD+N+++  R+
Sbjct: 290 MCFVYLLPGLAASIALIIYTGLILVLLNAFDITLTLPGIAGIILGIGMAVDANVIIFARV 349

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
           +EE    +SV  +L+ GF +A S I D NIT LIA  VL+  G G V+GFA T+ L I++
Sbjct: 350 KEELTAGKSVRSALNAGFHKAMSAILDGNITTLIAAAVLWLKGSGTVKGFAQTLALGIVV 409

Query: 499 SMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           SMFTA+ I R ++            +     +    I      +        + +     
Sbjct: 410 SMFTALVITRLIVYSFYAVGIHNEKVYGRVKAERKPIDFLGKKKAFFGISIALILVGFVF 469

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           +          LNY ++FKGG    V   +   L  +  N+  L        N   +K  
Sbjct: 470 MGINGGQGKGVLNYSLEFKGGTSTNVTFEQEYSLEEIDKNIVPLIEEATGDNNVQVQKVE 529

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                     ++   +     K  +           TE +   +S E+ +  I+ V+I+ 
Sbjct: 530 GTSQVIFKTQTLELDKREAFNKAMVDNFKVNEDEITTENISSTVSSEMRQDAIIAVLIAT 589

Query: 678 IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           I ML+YIW RFK   FA  A+  L+ D+   L F+ +  +    T +A +LT++GYS+N 
Sbjct: 590 ICMLLYIWFRFKDIRFATSAVLALLHDVLIVLAFYVIARVSVGNTFIACMLTIVGYSINA 649

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
            +V++DR+R+ MK         +L+++ I  TL RS+YTS+  F+ V  + + G S I  
Sbjct: 650 TIVIFDRIREEMKTKKRGEDLSELVNRCITRTLTRSIYTSLTTFVMVAVLFILGVSSIKE 709

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           FA+P+  GI+  A SS+ I   +   +     
Sbjct: 710 FALPLMVGIICGAYSSVCITGALWYVMKKRSK 741



 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 86/250 (34%), Gaps = 4/250 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +V      ++                        G    +         +I 
Sbjct: 190 KFAAATKSAVAAKETIAIYYDGELISVPSVNTEIKDGEAQISGSMTYEEADKLASTIRIG 249

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +        + +VG ++  E I   +    I    + I++   +     L A   LI+ 
Sbjct: 250 GLSLQLEELRSNVVGAQLGEEAISTSLKAGAIGLALVFIFMCFVY-LLPGLAASIALIIY 308

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               L     F I   L  +A ++  IG +V+  V+++ R+++ +       S R  ++ 
Sbjct: 309 TGLILVLLNAFDITLTLPGIAGIILGIGMAVDANVIIFARVKEELTA---GKSVRSALNA 365

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             ++ +   +  ++   I+   + + G   +  FA  +A GIVV+  +++ I   I+   
Sbjct: 366 GFHKAMSAILDGNITTLIAAAVLWLKGSGTVKGFAQTLALGIVVSMFTALVITRLIVYSF 425

Query: 824 YDWRAKNARI 833
           Y     N ++
Sbjct: 426 YAVGIHNEKV 435



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 44/118 (37%), Gaps = 7/118 (5%)

Query: 1   MRNNPWLVILYSMICCIGLL-IALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+ +  ++ L   +  I LL         ++             I LGLDL GG  +  +
Sbjct: 1   MKKSKGVISLILTVALIALLGFTTVVGFGKTGSGA------AKNIKLGLDLEGGVSITYQ 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           V  +      +     +L+  +++        ++ +++I++     +    I D++  
Sbjct: 55  VKGEKPSQSDMDDTIYKLQRRVEQYSTEATVYQEGEDRISIEIPGVKDANKILDELGQ 112


>gi|126654008|ref|ZP_01725841.1| preprotein translocase subunits D and F [Bacillus sp. B14905]
 gi|126589482|gb|EAZ83626.1| preprotein translocase subunits D and F [Bacillus sp. B14905]
          Length = 755

 Score =  303 bits (775), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 190/696 (27%), Positives = 333/696 (47%), Gaps = 27/696 (3%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
              ++    +  +   + +R++ +G+SE +IQ    +RI +QL G +D    R+LL T+A
Sbjct: 53  EGQKITPEIVTATSTALGERVNTMGVSEPSIQVEDKNRIRVQLAGVEDQESARKLLSTSA 112

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            ++F  V  N    G        +DS   Q      + +           F   T K   
Sbjct: 113 NLTFRDVDDNLLLDGDDLKANGAKDSFDQQNRPIVSLTL------KDAKKFADITSKIAA 166

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
             +   +           +  K  +     R  +A  ++Q + +    ISGNF+++    
Sbjct: 167 KPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTLNTTDVMISGNFSVDETKN 226

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +L AG+LP+KL+ +   +VGA  G  ++     A + G+V+I +FM+  Y   G ++
Sbjct: 227 LADILNAGALPVKLDEIYSTSVGAQFGDAALKSTIFAGIVGVVIIFIFMLFYYRLPGFIS 286

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ +   L L +   + A LTLP IA IVLGIG+AVD+NIL  ERIREE R   S   
Sbjct: 287 IITLTVFTFLVLVVFDWINAVLTLPGIAAIVLGIGMAVDANILAAERIREELRVGYSAKQ 346

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +  +G  ++ S I D+ +T L+A  VLF +G  +V+GFA T+ +SIL+S  TA+   R +
Sbjct: 347 AFQIGSKQSLSAIVDAQLTTLLAAAVLFQWGTSSVKGFATTLIISILLSFLTAVWGSRVL 406

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAI------------QFMRARFWGVGISILFSI 558
           +  ++    + +     +++         I             F+  R      S+   +
Sbjct: 407 LGLLVNSGYINNPAWFGIAKSKQHSLDENIGTLDLSTKFDRFDFVHNRKKFYTFSLAILV 466

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + ++    LN GIDF  G ++ + +++ +    V   L+S+            + N  
Sbjct: 467 AGLVVIGIFRLNLGIDFSSGTRVQIESDQTLTKEEVSKYLDSIDFSSEDIILSGEKSNTA 526

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V                E++K K               V P + +EL++  I  + I+A+
Sbjct: 527 VIRYKDDLSQA------EILKFKKEAGEKYGHEPAVSTVSPTVGKELVKNAIKALAIAAL 580

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF+W   +GAI +L+ D+   +  F+   +E ++T +AAVLT++GYS+ND +
Sbjct: 581 GIIIYVAIRFEWRMGIGAIVSLLHDVFLIVAVFSFMRLEVDITFIAAVLTIVGYSINDTI 640

Query: 739 VVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DRMR+N+  Y T        ++++KS+ +T+GRSV T +   I V+ + ++G   I 
Sbjct: 641 VTFDRMRENLDRYDTINDREVLANIVNKSLRQTMGRSVNTVLTVIIVVIALLIFGAPSIQ 700

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +F+I +  G++    SSI IAA I   +     K +
Sbjct: 701 NFSIALLIGLITGMYSSICIAAQIWYSLKIREMKKS 736



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 88/743 (11%), Positives = 198/743 (26%), Gaps = 58/743 (7%)

Query: 1   MR-NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+  +  +  L  ++  +  +    N + +              I LGLDL+GG  ++ E
Sbjct: 1   MKLKSRIVAFLLILVLLVAGISTTVNGVLKD-------------IKLGLDLQGGFEVLYE 47

Query: 60  V----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADK 114
           V    +        +   S  L   +   G+   S++    N+I +  A    +E+    
Sbjct: 48  VNELKEGQKITPEIVTATSTALGERVNTMGVSEPSIQVEDKNRIRVQLAGVEDQESARKL 107

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           ++         ++ +   +               +++ DQ     +  +++  ++  D  
Sbjct: 108 LSTSANLTFRDVDDNLLLDGDDLKANGA------KDSFDQQNRPIVSLTLKDAKKFADIT 161

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
               +         + +      D  +           S   V    +    M    F  
Sbjct: 162 SKIAAKPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTLNTTDVMISGNFSV 221

Query: 235 DSDGNQYLVEDKVEI-----------SGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
           D   N   + +   +            G     A            V I F  M      
Sbjct: 222 DETKNLADILNAGALPVKLDEIYSTSVGAQFGDAALKSTIFAGIVGVVIIFIFMLFYYRL 281

Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343
                 I   +   L   V         +P   A + G      A ILAA      L + 
Sbjct: 282 PGFISIITLTVFTFLVLVVFDWINAVLTLPGIAAIVLGIGMAVDANILAAERIREELRVG 341

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL--- 400
            +  +   +G+     +I       +    ++  +       +      SI L+ +    
Sbjct: 342 YSAKQAFQIGSKQSLSAIVDAQLTTLLAAAVLFQWGTSSVKGFATTLIISILLSFLTAVW 401

Query: 401 ---TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
               L  L +    +  P+  GI      ++D NI   +   + +R +          F 
Sbjct: 402 GSRVLLGLLVNSGYINNPAWFGIAKSKQHSLDENIGTLDLSTKFDRFDFVHN---RKKFY 458

Query: 458 RAYSTIFDSNITAL----IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
                I  + +  +    +   + F  G         T+    +     +I      +I 
Sbjct: 459 TFSLAILVAGLVVIGIFRLNLGIDFSSGTRVQIESDQTLTKEEVSKYLDSIDFSSEDIIL 518

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
                    I          I         +        ++  ++    +          
Sbjct: 519 SGEKSNTAVIRYKDDLSQAEILKFKKEAGEKYGHEPAVSTVSPTVGKELVKNAIKALAIA 578

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                I + +     + +  + S L  + +    F     E +             +   
Sbjct: 579 ALGIIIYVAIRFEWRMGIGAIVSLLHDVFLIVAVFSFMRLEVDITFIAAVLTIVGYSIND 638

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR------ 687
            +    +    +    TI + E++   +++ L +     V      +++ I +       
Sbjct: 639 TIVTFDRMRENLDRYDTINDREVLANIVNKSLRQTMGRSVNTVLTVIIVVIALLIFGAPS 698

Query: 688 ---FKWYFALGAITTLILDITKT 707
              F     +G IT +   I   
Sbjct: 699 IQNFSIALLIGLITGMYSSICIA 721


>gi|239637558|ref|ZP_04678530.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus warneri L37603]
 gi|239596776|gb|EEQ79301.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus warneri L37603]
          Length = 759

 Score =  303 bits (775), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 168/696 (24%), Positives = 320/696 (45%), Gaps = 26/696 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++  +A++ + + +  R++ +G+SE  IQ    +RI +QL G +D    R++L + A 
Sbjct: 54  GDKIDKNALQSTAQTLENRVNVLGVSEPKIQVEDPNRIRVQLAGVKDQKEARKILSSQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++           G        +                           +    +  V 
Sbjct: 114 LTIRDADDKVKLSGADIKQGSAKQEFKQNTNDPTVTFKVKDKNKFKKVTEEISKKQNNVM 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           + + +      ++                       IN           G   ++ A  +
Sbjct: 174 VVWLDFKKGDSYKKEA----DKKDPKFVSAANVDQPINSDSVEISGGFHGQEGVKKAKQI 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AGSLP+ L  +   +VGA+ G D++ K   A V G+ +I LFM+  Y   GLVA 
Sbjct: 230 AELLNAGSLPVDLKEIYSNSVGAEFGQDALDKTIFASVLGVAVIYLFMLGFYRLPGLVAI 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  +
Sbjct: 290 IALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQA 349

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                  ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R ++
Sbjct: 350 YSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRLLL 409

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++     K        +     D                  F++     + +SIL  +
Sbjct: 410 SLLVYSNLFKKKYWLFGVKKADRHDISEGKDVHDLKTSFEKWNFVKLAKPLISLSILIVV 469

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + +L+   LN GIDF  G ++ + +   +  S V   ++ + +     Q         
Sbjct: 470 VGLVILYIFKLNLGIDFSAGTRVDLQSKEALTQSKVEKVVKDVGLDPDQIQINGSGNKNA 529

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                Q        ++ + +K +               V P I +EL +  ++ ++ +A+
Sbjct: 530 TVQFKQDLSQAKDNQLSDKMKSEFGNA------PQINTVSPLIGQELAKNAMLALVYAAV 583

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ +RF+W   L ++  L+ D+   +  F+L  +E +LT +AA+LT++GYS+ND +
Sbjct: 584 GIIIYVSLRFEWRMGLSSVLALLHDVFIIVAVFSLLRLEVDLTFIAAILTIVGYSINDTI 643

Query: 739 VVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R+N+       ++    D++++SI +T+ RS+ T +   + V+ + ++G   I 
Sbjct: 644 VTFDRVRENLHKIKVITSAEQIDDIVNRSIRQTMTRSINTVLTVVVVVVAILLFGAPTIF 703

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +F++ +  G++    SSIFIA P+   +   + K +
Sbjct: 704 NFSLALLIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739


>gi|229828663|ref|ZP_04454732.1| hypothetical protein GCWU000342_00729 [Shuttleworthia satelles DSM
           14600]
 gi|229793257|gb|EEP29371.1| hypothetical protein GCWU000342_00729 [Shuttleworthia satelles DSM
           14600]
          Length = 783

 Score =  303 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 194/698 (27%), Positives = 345/698 (49%), Gaps = 23/698 (3%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
           +  Q+     +    I     +    +E+ + ++G +RI +++PG +D + +   LGT  
Sbjct: 64  SSQQMKDTIAKLQSRIENDLGEGQTTTEANVYQVGDNRITVEIPGVKDANAMLAQLGTPG 123

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDS---DGNQYLVEDKVEISGIHLNGATANFDPKT-- 265
           K+ F K   ++    +    +  +        Q   +  + ++G  +  + A ++ +   
Sbjct: 124 KLYFIKQTGSDGSANYQVSQQTGQYELTKSIEQLQSDGSIVLTGSDVTSSKAGYETQQTG 183

Query: 266 -HKPVVDISFDEMGARRFFEVT--RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
             KPVV IS +E G R F + T      G+ + +  DG+ ++ P ++ AI  G A I+G 
Sbjct: 184 AQKPVVQISLNENGTRAFADATTQAKAKGQSIGIYYDGKFVSVPRVDAAITDGSAVINGM 243

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            + E A  LA  +R G L I+L  ++   VGA LGS+++     A   GL ++++FMI L
Sbjct: 244 SSYEEADKLATYIRIGGLDIELEELQSEVVGAQLGSNAVSTALLAAGVGLAIVMVFMIAL 303

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   GL A  ++ L  ++T+A+L     TLTLP +AG++L +G+AVD+N ++  RIREE 
Sbjct: 304 YLLPGLAAAIALALYTVMTVAILYAFNVTLTLPGVAGVILSLGMAVDANAIIFARIREEI 363

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
               +V  ++  GF +A   I D N+T LIA  VL   G G V+GFAIT+ + +++SMFT
Sbjct: 364 SAGANVRNAVAAGFHKALGAIIDGNVTTLIAAAVLGLLGSGTVKGFAITLAIGVVLSMFT 423

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A+ I R ++   +       +       +    +   I F+  R+  +GIS+      + 
Sbjct: 424 ALLITRLIISIFMA------LGARDPKAYGKSREWPKINFIGRRWLFIGISLAVICAGVI 477

Query: 563 LLFTHGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            L  H L      NY ++F GG    V  ++  +L   +S +  +        +   +  
Sbjct: 478 GLGFHQLSAGKALNYSLEFSGGTSTTVSFDQAYNLQEAQSQIVPVFESVTGDHDVQVQTV 537

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              +       ++       + +    +     +  ++E +   I  E+ R  ++ VI++
Sbjct: 538 QNSKQIIFKTRTLNLEERKSLNEALNQKFGVAESEISSENISSTIGGEMRRAALIAVIVA 597

Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              MLIYIW+RF+ + FA  AI  L+ D+   L  +A+F +      +A +LT++GYSVN
Sbjct: 598 VFFMLIYIWLRFRDFRFASSAIIALVHDVLIVLTMYAIFRMSVGSAFIACILTVVGYSVN 657

Query: 736 DKVVVYDRMRKNMKLY--TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           D +V++DR R N+K    T++ +  ++ ++ + ETLGRS+ TS    + VL + + G S 
Sbjct: 658 DTIVIFDRHRDNLKTLTDTSNEALAEMANEGVRETLGRSLSTSFTTAVMVLMLLILGTST 717

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  FA P+  G++    SSIFIA P+   +       +
Sbjct: 718 MREFAFPLLVGVISGTYSSIFIATPLWYMMRSHSKIKS 755



 Score =  114 bits (283), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 90/248 (36%), Gaps = 4/248 (1%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                  +  +     +            +           G S  +         +I  
Sbjct: 201 FADATTQAKAKGQSIGIYYDGKFVSVPRVDAAITDGSAVINGMSSYEEADKLATYIRIGG 260

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           +        +E+VG ++    +   ++   +    +++++   +       AI   +  +
Sbjct: 261 LDIELEELQSEVVGAQLGSNAVSTALLAAGVGLAIVMVFMIALYLLPGLAAAIALALYTV 320

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T+     F +   L  VA V+  +G +V+   +++ R+R+ +       + R+ +   
Sbjct: 321 -MTVAILYAFNVTLTLPGVAGVILSLGMAVDANAIIFARIREEISA---GANVRNAVAAG 376

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            ++ LG  +  ++   I+   + + G   +  FAI +A G+V++  +++ I   I+    
Sbjct: 377 FHKALGAIIDGNVTTLIAAAVLGLLGSGTVKGFAITLAIGVVLSMFTALLITRLIISIFM 436

Query: 825 DWRAKNAR 832
              A++ +
Sbjct: 437 ALGARDPK 444



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/397 (10%), Positives = 108/397 (27%), Gaps = 19/397 (4%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL-----KKEGIGVFSM-RQI 94
              + LGLDL GG  +  +   D   +  ++    +L+S +     + +     ++ +  
Sbjct: 39  SKGLKLGLDLAGGVSITYQAKGDTPSSQQMKDTIAKLQSRIENDLGEGQTTTEANVYQVG 98

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVN-SKLNVDPKKNLLVTTTEKEISIVLSQN--- 150
            N+IT+     +    +  ++    +     +   D   N  V+    +  +  S     
Sbjct: 99  DNRITVEIPGVKDANAMLAQLGTPGKLYFIKQTGSDGSANYQVSQQTGQYELTKSIEQLQ 158

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR------Q 204
           +   ++    + +         Q G  +  +Q   +             ++ +       
Sbjct: 159 SDGSIVLTGSDVTSSKAGYETQQTGAQKPVVQISLNENGTRAFADATTQAKAKGQSIGIY 218

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
             G    +        +          +        Y+    ++I    L          
Sbjct: 219 YDGKFVSVPRVDAAITDGSAVINGMSSYEEADKLATYIRIGGLDIELEELQSEVVGAQLG 278

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
           ++     +    +G              P         L   +    + +    ++    
Sbjct: 279 SNAVSTALLAAGVGLAIVMVFMIALYLLPGLAAAIALALYTVMTVAILYAFNVTLTLPGV 338

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG---LVLIVLFMIV 381
                 L   + A ++       E         + +              +  ++   ++
Sbjct: 339 AGVILSLGMAVDANAIIFARIREEISAGANVRNAVAAGFHKALGAIIDGNVTTLIAAAVL 398

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                G V  F+I L + + L++ + L  T  + SI 
Sbjct: 399 GLLGSGTVKGFAITLAIGVVLSMFTALLITRLIISIF 435


>gi|16081162|ref|NP_390643.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221310703|ref|ZP_03592550.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221315027|ref|ZP_03596832.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221319948|ref|ZP_03601242.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221324229|ref|ZP_03605523.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|81342122|sp|O32047|SECDF_BACSU RecName: Full=Protein-export membrane protein secDF
 gi|3220156|gb|AAC31122.1| SecDF protein [Bacillus subtilis subsp. subtilis str. 168]
 gi|32468805|emb|CAB14724.2| protein-export membrane protein [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 737

 Score =  303 bits (774), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 197/694 (28%), Positives = 339/694 (48%), Gaps = 28/694 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++E + +R + +G+SE  IQ  G++RI +QL G  + +R R++L T A+
Sbjct: 53  GDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILATEAQ 112

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           +SF              G   + +     Y       I  I L  A    +       V 
Sbjct: 113 LSFRDANDKELLN----GADLVENGAKQTYDSTTNEPIVTIKLKDADKFGEVTKK---VM 165

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
                     + +  + +  K        + ++AP ++Q + +   +I G+FT + A  L
Sbjct: 166 KMAPNNQLVIWLDYDKGDSFKKEVQKEHPKFVSAPNVSQELNTTDVKIEGHFTAQEAKDL 225

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A++L AG+LP+KL      +VGA  G  +++    A + G+ +I LFM+  Y   GL+A 
Sbjct: 226 ASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAV 285

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + + +TL +   + A LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +SV  +
Sbjct: 286 ITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+++TIFD+NIT +IA VVLF FG  +V+GFA  + LSIL S  TA+ + R ++
Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405

Query: 512 IFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILFSI 558
             ++  + +             I                    F   R +    S   ++
Sbjct: 406 ALLVESRWLDRKKGWFGVNKKHIMDIQDTDENTEPHTPFQKWDFTSKRKYFFIFSSAVTV 465

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I +L    LN GIDF  G ++ V ++  +    V  + ESL +   +      + N  
Sbjct: 466 AGIIILLVFRLNLGIDFASGARIEVQSDHKLTTEQVEKDFESLGMDPDTVVLSGEKSNIG 525

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V       D     +V    K K           N   V P + +EL R  +  V I++I
Sbjct: 526 VARFVGVPDKETIAKVKTYFKDKYGSD------PNVSTVSPTVGKELARNALYAVAIASI 579

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF++  A+ AI +L+ D    + FF++  +E ++T +AA+LT+IGYS+ND +
Sbjct: 580 GIIIYVSIRFEYKMAIAAIASLLYDAFFIVTFFSITRLEVDVTFIAAILTIIGYSINDTI 639

Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R++MK            +++ S+ +T  RS+ T +   I V+ + ++G S I +
Sbjct: 640 VTFDRVREHMKKRKPKTFADLNHIVNLSLQQTFTRSINTVLTVVIVVVTLLIFGASSITN 699

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           F+I +  G++    SS++IAA I L       K 
Sbjct: 700 FSIALLVGLLTGVYSSLYIAAQIWLAWKGRELKK 733



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +          G   AQ             +    T + +  VG +  ++ +   +   
Sbjct: 203 SQELNTTDVKIEGHFTAQEAKDLASILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAG 262

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I+    + +++   ++    L A+ TL + I  TL  F        L  +AA++  +G +
Sbjct: 263 IVGIAIIFLFMLFYYRLP-GLIAVITLSVYIYITLQIFDWMNAVLTLPGIAALILGVGMA 321

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  ++ Y+R+++ +KL     S R         +       ++   I+ + + ++G S 
Sbjct: 322 VDANIITYERIKEELKL---GKSVRSAFRSGNRRSFATIFDANITTIIAAVVLFIFGTSS 378

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  FA  +   I+ +  +++F++  +L  + + R  + +
Sbjct: 379 VKGFATMLILSILTSFITAVFLSRFLLALLVESRWLDRK 417



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/419 (12%), Positives = 115/419 (27%), Gaps = 22/419 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +  +  +  IG  +                    N I+LGLDL+GG  ++ +V
Sbjct: 1   MKKGRL-IAFFLFVLLIGTGLGYFTKPA------------ANNITLGLDLQGGFEVLYDV 47

Query: 61  DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
                 D      L    + L       G+   +++ +  N+I +  A    +    + +
Sbjct: 48  QPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISI--VLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
               Q      N     N                +   I  +     ++  E+ ++ +  
Sbjct: 108 ATEAQLSFRDANDKELLNGADLVENGAKQTYDSTTNEPIVTIKLKDADKFGEVTKKVMKM 167

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
              ++  I          +   +++  +       + +++   V                
Sbjct: 168 APNNQLVIWLDYDKGDSFKKEVQKEHPKFVSAPNVSQELNTTDVKIEGHFTAQEAKDLAS 227

Query: 234 RDSDGN--QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             + G     L E      G        +         + I F  M            I 
Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHDTVFAGIVGIAIIFLFMLFYYRLPGLIAVIT 287

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             + + +  ++         +P   A I G      A I+        L +  ++     
Sbjct: 288 LSVYIYITLQIFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            G      +I+      +   V++ +F       +  +   SI  + I  + L   L A
Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLA 406


>gi|282890157|ref|ZP_06298687.1| hypothetical protein pah_c014o001 [Parachlamydia acanthamoebae str.
            Hall's coccus]
 gi|281499814|gb|EFB42103.1| hypothetical protein pah_c014o001 [Parachlamydia acanthamoebae str.
            Hall's coccus]
          Length = 1473

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 197/842 (23%), Positives = 358/842 (42%), Gaps = 64/842 (7%)

Query: 42   NRISLGLDLRGGSHLVLEV----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
              +  GLDL GG  + + +    +        L+  ++EL + + K G+   ++R   N 
Sbjct: 626  KILKWGLDLSGGKTVRIGLRDHNNRPVTNPEDLKQATNELYTRINKMGVSERTIRVENNN 685

Query: 98   ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
            I L F  S+   + ++ V       +         N  +  +  +    +          
Sbjct: 686  IILDFPGSQAL-SASELVQASAMYFHIVNEKFTPNNPTLKDSVNQFLQGVWNEAAVTNRK 744

Query: 158  HAIEQSMEIIRQRI-DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                 +    R    D       +      +   +++P   D +       T + ++  +
Sbjct: 745  DVQGVNEIAWRHLGGDDQQTYPRSEAARVLYDNGLRIPSPDDATTGNAFNDTLSAVAIMR 804

Query: 217  VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
                +  +G    +  +  +   +      V++      G   NF  K       +  + 
Sbjct: 805  GDDYSEWEGQSTPLLIVFRNYALEGSSLTNVQVGYDPTQGNILNFAVKGSYDGNKVVGNP 864

Query: 277  MGARRFFEVTRD-------------NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
                  +                  +       V+  + + +    +A     A ISG F
Sbjct: 865  RDNFYAWTSQFAEDKILGTPKENYSHGRGWRMAVILNQKVISQPALRAALRDGATISGRF 924

Query: 324  TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            +      LAA L+AGSL    +I+ E+NV A+LG+    +G  A +  L L+V+ MI  Y
Sbjct: 925  SQREINQLAADLKAGSLSFTPHILSEQNVSAELGTQERARGIGASLVALALVVIAMISYY 984

Query: 384  GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
               GLVA  ++ LN+++   +L  L A LTLP IAGIVL IG+AVD+N+LV ER+REE +
Sbjct: 985  RFAGLVASCAVLLNILIMWGVLQNLDAALTLPGIAGIVLTIGMAVDANVLVFERVREEFK 1044

Query: 444  KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             +  +  ++  G+ +A+S I DSN+T +IA +VL  F  G ++GFA+T+ + IL SMFTA
Sbjct: 1045 ISGRIASAIQAGYRKAFSAIVDSNVTTIIAALVLIQFDSGPIKGFAVTLIIGILSSMFTA 1104

Query: 504  ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS-ICSIC 562
            + + R      ++    KS+ +                F+        IS +   + S  
Sbjct: 1105 LFMTRYFFAGWVKNPNNKSLTMCEFIGK------THFDFIGQAKKAFIISAIVMLVGSYL 1158

Query: 563  LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES------LQIGDISFQNFDGEKN 616
             +      +G+DF GG  L V      +    R ++ +          D+  Q       
Sbjct: 1159 FISQKNTIFGMDFTGGYSLNVEVQEQAEHPSYRQDVMNSLLAAGASTTDVQVQELSKPNQ 1218

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN----------------------- 653
              +++     +       L  V           +                          
Sbjct: 1219 LRIQMGMGMEEKGHPFYQLPEVSNVEGAPYEYQSNPRIVWLVNALQENGVQIPKDQLESL 1278

Query: 654  ---TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                 ++  ++S  +    ++G+ I+   +L YI +RF++ +A+GA+  L  D+  TLG 
Sbjct: 1279 NRNWTVMSGQLSEAMRDNALIGLAIALACILAYITLRFEFKYAIGAVIALAHDVIITLGI 1338

Query: 711  FALFG-----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             ALF      ++ +L  V A++T+IGYS+ND ++V+DR+R+++K+Y   +SF ++++ SI
Sbjct: 1339 IALFHKLGFPVQIDLEVVGAIMTIIGYSLNDTIIVFDRIREDVKVYRK-MSFSEILNHSI 1397

Query: 766  NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            N TL R++ TS    + +L + + GG  I  F++ M  G+VV   SS+FIA P++L+ ++
Sbjct: 1398 NVTLSRTIMTSGTTLLVLLALVLLGGPSIFGFSLVMTVGVVVGTLSSLFIAGPVMLYFHN 1457

Query: 826  WR 827
              
Sbjct: 1458 RE 1459


>gi|299535659|ref|ZP_07048980.1| bifunctional preprotein translocase subunit SecD/SecF
           [Lysinibacillus fusiformis ZC1]
 gi|298728859|gb|EFI69413.1| bifunctional preprotein translocase subunit SecD/SecF
           [Lysinibacillus fusiformis ZC1]
          Length = 755

 Score =  302 bits (773), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 194/695 (27%), Positives = 331/695 (47%), Gaps = 27/695 (3%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
              ++    +  +   + +R++ +G+SE +IQ    +RI +QL G +D    R+LL T+A
Sbjct: 53  EGQKITPEIVTATSTALGERVNTMGVSEPSIQVEDKNRIRVQLAGVEDQESARKLLSTSA 112

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            ++F  V  N    G        +DS   Q      + +           F   T K   
Sbjct: 113 NLTFRDVDDNLLLDGDDLKANGAKDSFDQQNRPIVSLTL------KDAKKFADITSKIAA 166

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
             +   +           +  K  +     R  +A  ++Q + +    ISGNFT+E    
Sbjct: 167 KPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTLNTTDVMISGNFTVEETKN 226

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +L AG+LP+KL+ +   +VGA  G  ++     A + G+V+I LFM+  Y   G ++
Sbjct: 227 LADILNAGALPVKLDEIYSTSVGAQFGDAALKSTIFAGIVGVVVIFLFMLFYYRLPGFIS 286

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ +   L L +   + A LTLP IA IVLGIG+AVD+NIL  ERIREE R   SV  
Sbjct: 287 IITLAVFTFLVLVVFDWINAVLTLPGIAAIVLGIGMAVDANILAAERIREELRVGYSVKQ 346

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +  +G  ++ S I D+ +T L+A  VLF +G  +V+GFA T+ +SIL+S  TA+   R +
Sbjct: 347 AFQIGSKQSLSAIIDAQLTTLLAAAVLFQWGTSSVKGFATTLIISILLSFLTAVWGSRVL 406

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAI------------QFMRARFWGVGISILFSI 558
           +  ++      S     +++         I             F+  R      S+   +
Sbjct: 407 LGLLVNSGYFNSPAWFGIAKSKQHSLDENIGTLDLSTKFDRFDFVHNRKKFYTFSLAILV 466

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + +L    LN GIDF  G ++ + +++ +    V   L+S+            + N  
Sbjct: 467 AGLVVLGIFRLNLGIDFSSGTRVQIESDQTLTKEEVSKYLDSIDFSSEDIILSGEKSNTA 526

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V              + +   +K               V P + +EL++  I  + ++AI
Sbjct: 527 VIRYKDDLTQAEIIEIKKEAGEKYG------HEPAVSTVSPTVGKELVKNAIKALSLAAI 580

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF+W   +GAI +L+ D+   +  F+   +E ++T +AAVLT++GYS+ND +
Sbjct: 581 GIIIYVAIRFEWRMGIGAIVSLLHDVFLIVAVFSFMRLEVDITFIAAVLTIVGYSINDTI 640

Query: 739 VVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DRMR+N+  Y T        ++++KS+ +T+GRSV T +   I V+ + ++G   I 
Sbjct: 641 VTFDRMRENLNRYDTINDREVLANIVNKSLRQTMGRSVNTVLTVIIVVVALLIFGAPSIQ 700

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +F+I +  G++    SSI IAA I   +     K 
Sbjct: 701 NFSIALLIGLITGMYSSICIAAQIWYSLKIREMKK 735



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 63/231 (27%), Gaps = 20/231 (8%)

Query: 1   MR-NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+  +  +  L  ++     +    N + +              I LGLDL+GG  ++ E
Sbjct: 1   MKLKSRIVAFLLIIVLLAAGISTTVNGVLKD-------------IKLGLDLQGGFEVLYE 47

Query: 60  V----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADK 114
           V    +        +   S  L   +   G+   S++    N+I +  A    +E+    
Sbjct: 48  VNELKEGQKITPEIVTATSTALGERVNTMGVSEPSIQVEDKNRIRVQLAGVEDQESARKL 107

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           ++         +  D                   Q N   V     +             
Sbjct: 108 LSTSANLTFRDV-DDNLLLDGDDLKANGAKDSFDQQNRPIVSLTLKDAKKFADITSKIAA 166

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
             +   +  +           + +  + +    + A +S      +    G
Sbjct: 167 KPAGQNLLVVWLDFEEGVDSYKAESQKAKPRYASAATVSQTLNTTDVMISG 217


>gi|154686906|ref|YP_001422067.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           amyloliquefaciens FZB42]
 gi|154352757|gb|ABS74836.1| SecDF [Bacillus amyloliquefaciens FZB42]
          Length = 739

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 191/696 (27%), Positives = 336/696 (48%), Gaps = 28/696 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  +++ + +R + +G+SE  IQ  G++RI +QL G  + +R R++L T A+
Sbjct: 53  GDKITKDVLVSTVQALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILSTEAQ 112

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           +SF              G   + +     +       I  + L  A    +       V 
Sbjct: 113 LSFRDTNDKELLN----GSDLVENGAKQTFDPTTNEPIVSVKLKDADKFGEVTKK---VK 165

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
                     + +  + +  K        + ++AP ++Q + +    I G FT++ A  L
Sbjct: 166 KMAPNNQLVIWLDYQKGDSFKKEVGKKHPKYVSAPNVSQELNTKDVTIEGQFTVQKAKDL 225

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AG+LP+KL      +VGA  G  +++    A + G+ ++ LFM++ Y   GL+A 
Sbjct: 226 ANILNAGALPVKLTEKYSTSVGAQFGQQALHDTVEAGIIGIAIVFLFMLLYYRLPGLIAV 285

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + V +TL +   + A LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +SV  +
Sbjct: 286 ITLSVYVYITLQVFDWMQAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+++TIFD+NIT +IA VVLF FG  +V+GFA  + LSIL S  TA+ + R ++
Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++  + +         +   I D                  F   R +    S   +I
Sbjct: 406 ALLVESRWLDRKKSWFGVKKKHIMDIQKTDENTEPHTAFQKWDFTSKRKYFFIFSSAVTI 465

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I +L    LN GIDF  G ++ V +N  +    V  + +SL +   +      E +  
Sbjct: 466 AGIIILLVFKLNLGIDFASGARIDVQSNHSLTAHQVEKDFDSLGMEPENIVLSGKENHVA 525

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                          +    K K           N   V P + +EL R  +  V I++I
Sbjct: 526 AARFVGEPSKEKIAEIKTYFKDKYGSE------PNVSTVSPTVGKELARNALYAVAIASI 579

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF++  A+ AI +L+ D    + FF++  +E ++T +AA+LT+IGYS+ND +
Sbjct: 580 GIIIYVSIRFEYRMAVAAIVSLLYDAFFIIAFFSITRLEVDVTFIAAILTIIGYSINDTI 639

Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R+ MK            +++ S+ +T  RS+ T +   I V+ + + G S I +
Sbjct: 640 VTFDRIREQMKKRKPKSFADLEYIVNLSLQQTFTRSINTVLTVVIVVVVLLILGSSSITN 699

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           F++ +  G++    SS++IAA + L       K  +
Sbjct: 700 FSVALLVGLLTGVYSSLYIAAQLWLVWKGKEFKGKK 735



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 53/419 (12%), Positives = 117/419 (27%), Gaps = 22/419 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+       L +    + L+     +  +            N I+LGLDLRGG  ++ +V
Sbjct: 1   MKKGR----LIAFFLIVLLIGTGLGYFTKPAA---------NNITLGLDLRGGFEVLYDV 47

Query: 61  DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
                 D      L      L       G+   +++ +  N+I +  A    +    + +
Sbjct: 48  QPVKKGDKITKDVLVSTVQALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107

Query: 116 TLFLQGVNSKLNVD---PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
           +   Q      N        +L+    ++      ++  +   +  A +      + +  
Sbjct: 108 STEAQLSFRDTNDKELLNGSDLVENGAKQTFDPTTNEPIVSVKLKDADKFGEVTKKVKKM 167

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
                              +  G++ P  +     +    +    +           +  
Sbjct: 168 APNNQLVIWLDYQKGDSFKKEVGKKHPKYVSAPNVSQELNTKDVTIEGQFTVQKAKDLAN 227

Query: 233 LRDSDGNQY-LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           + ++      L E      G        +   +     + I F  M            I 
Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHDTVEAGIIGIAIVFLFMLLYYRLPGLIAVIT 287

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             + V +  +V         +P   A I G      A I+        L +  ++     
Sbjct: 288 LSVYVYITLQVFDWMQAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            G      +I+      +   V++ +F       +  +   SI  + I  + L   L A
Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLLA 406


>gi|251778537|ref|ZP_04821457.1| protein export protein SecD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082852|gb|EES48742.1| protein export protein SecD [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 720

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 181/628 (28%), Positives = 334/628 (53%), Gaps = 11/628 (1%)

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           + + + TT      +V    +           +  +      E +  ++G  +  A+A  
Sbjct: 85  VAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSGNLVFKSPEGEEILTGKDVKKASAVL 144

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           + +   PVV +  ++ G + F E T   +G+ ++V +D  +LT+P +   I  G A I+G
Sbjct: 145 NQQDGNPVVSLELNDDGQKAFAEATGKYVGQKISVYMDDELLTSPTVQTQITDGSAIITG 204

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
           + ++E A  LA ++ +G+LP+ +  V  +NVGA LG+ ++     A   G+ L+ LFMI+
Sbjct: 205 STSLEDAKKLAGIINSGALPVTVKAVSVQNVGAQLGATALPNALKAGAIGIGLVFLFMIL 264

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   GL+A  ++ L + +TL + + +G TLTLP IA ++L IG+AVD+N+L+ ERIREE
Sbjct: 265 YYRVPGLLASIALTLYIAITLLIFTEIGVTLTLPGIAALLLTIGMAVDANVLIFERIREE 324

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            ++  SV  S+  GF  A S+I DSN+T ++A ++L+F G G V+GFA+T+ + I++S+F
Sbjct: 325 LKRGISVKTSVKKGFENALSSIVDSNVTTILAGLILYFLGSGTVKGFAVTLMIGIVVSLF 384

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR---ARFWGVGISILFSI 558
           T++ + + ++   +    +K +    +            ++++        + IS++  +
Sbjct: 385 TSLVVTKLLVNLSVDIGLLKKLSNFGVKNTEDDIKTGERKYLKIIEKSKIWLSISLIVIL 444

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                LFT GLN+GIDFKGG QL +     VD   V + +++     ++    + +    
Sbjct: 445 LGCGFLFTKGLNFGIDFKGGTQLTIQLKDGVDKQEVDNIIKTYASDAVTNTINNNQYEVK 504

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                    S   T + E        +         + +G  I +EL +  ++ + ++ I
Sbjct: 505 SGDLNSEKVSSIMTELKEKYDLDENAL------LAQDEIGASIGKELTQNSLIALFVACI 558

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ML YI +RF+  F + A+   + D+  T+  +A+FGI  N   +AA+LT+IGYS+ND +
Sbjct: 559 VMLAYIGVRFELKFGIAALVATLHDVLITVSVYAIFGISVNTPFIAAILTIIGYSMNDTI 618

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V++DR+R+N K      +  ++ + S+ ET+ RS+ T+M    +++ + ++    +  F 
Sbjct: 619 VIFDRIRENSKSM-RRANPVEVANVSLTETMTRSINTTMTTLFTIVAVNIF-VPTVREFT 676

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDW 826
           IP+  GIV  A SSIF+A+P  +++ + 
Sbjct: 677 IPLIIGIVAGAYSSIFVASPTWVYLKNR 704



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 2/144 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+       L+++I  + L +A  +     ++  +      + I  GLDL+GG  +++E+
Sbjct: 1   MKKKGKSSALFTVIVLVTLFLAF-SGFKGFVVGGWEFKSFNDVIKKGLDLQGGVSVLMEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
            ED      L+   + +   + K G+    +      +I +    +   + I D ++   
Sbjct: 60  QEDKVTQDQLESTKEHISLRVNKMGVAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSG 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEI 143
             V      +             +
Sbjct: 120 NLVFKSPEGEEILTGKDVKKASAV 143


>gi|271969992|ref|YP_003344188.1| bifunctional preprotein translocase subunit SecD/SecF
           [Streptosporangium roseum DSM 43021]
 gi|270513167|gb|ACZ91445.1| bifunctional preprotein translocase subunit SecD/SecF
           [Streptosporangium roseum DSM 43021]
          Length = 756

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 194/705 (27%), Positives = 347/705 (49%), Gaps = 27/705 (3%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +I +    +   +  + A ++++E++R+R D +G++++ + R G  RI+++LPG QDP
Sbjct: 37  GTQIVLETRDSPTVKADAEATDRTLEVLRRRADALGVADAPLARSGERRIIVELPGLQDP 96

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-AT 258
           ++  +++G TA+++FH V+              +   +    L+     ++G  +     
Sbjct: 97  TKAAEVIGKTAQLTFHPVIALADATTKPKEGEQIIPDEDGVKLLVGPARLTGDGVEDAQA 156

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV-------------LDGRVLTA 305
                +     V +   + G + +  +T +    P                 +  +V   
Sbjct: 157 GTDPQQGSGWYVTVDLRDGGRKAWAGLTGEAACNPAGDPKRRVAIVLDSKVVVSPQVNEG 216

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
              N  +P    QI+G+FT E AG LAA+++ GSLP+ + I+E+R VG  LG+ +I    
Sbjct: 217 VACNVGLPGSSTQITGSFTAEEAGDLAALIKGGSLPVPVEIIEQRTVGPTLGAAAIASSA 276

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A V G++L  LF++V+Y   G +A  ++    +++ A L  LGATLTLP +AG VL IG
Sbjct: 277 QAAVIGVLLTALFIVVIYRLVGFLATIALACYALISYAALVALGATLTLPGLAGFVLAIG 336

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +AVD+N+LV ER REE      +  +L+ GF  A+S + DSNIT L+A  +LFF   G V
Sbjct: 337 MAVDANVLVFERAREEYAVGPRLRPALEKGFRNAWSAVADSNITTLLAAGLLFFLASGPV 396

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLIPDCIAIQ 541
           RGF +T+ + ++ S+ TA+ I R +  + +  + +           + R     +     
Sbjct: 397 RGFGVTLSIGVIASLVTAMVITRVLAEWAVTRRPVARRPALTGLADIGRVRTWLNARKPG 456

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            MR R     ++ +  + ++  +   G+N+G++F GG  +    + P+     R  +   
Sbjct: 457 LMRHRTVYFVVTGVLVVVAVAGVAVRGVNFGVEFTGGRLVEYSTSVPITADAARELVGEA 516

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              +   Q  D +                    L  ++  +       T +  E++GP +
Sbjct: 517 GFPNAVVQASDAD--------ISVRTGQIGAADLARIEAALESGAGQITKERDELIGPSL 568

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL R  ++ + ++  A L+Y+  RF+W F L  +  L++D    +G FA  G   +  
Sbjct: 569 GDELRRNALIALAVALAAQLVYLAFRFRWTFGLATVLALVVDSAIVVGAFAWLGKPVDGV 628

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            +AA+LT+IGYSVNDKVVV+DR+R+ +        F ++ + +I +T+ R+V T + A  
Sbjct: 629 FLAAMLTVIGYSVNDKVVVFDRVRE-LWGMRPRTPFAEVAETAILQTVPRTVNTGLGALF 687

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +  +AV GG  +  FA+ +  GIVV   SS  +AAP+ +     
Sbjct: 688 ILAALAVLGGDSLTDFAVALLIGIVVGTLSSALVAAPLAIEFEKR 732



 Score = 99.8 bits (246), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 62/174 (35%), Gaps = 4/174 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VGP +    I       +I  +   ++I + ++      A   L      +      
Sbjct: 260 QRTVGPTLGAAAIASSAQAAVIGVLLTALFIVVIYRLV-GFLATIALACYALISYAALVA 318

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    L  +A  +  IG +V+  V+V++R R+   +       R  ++K          
Sbjct: 319 LGATLTLPGLAGFVLAIGMAVDANVLVFERAREEYAVGPR---LRPALEKGFRNAWSAVA 375

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +++   ++   +       +  F + ++ G++ +  +++ I   +  +    R
Sbjct: 376 DSNITTLLAAGLLFFLASGPVRGFGVTLSIGVIASLVTAMVITRVLAEWAVTRR 429



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 48/189 (25%), Gaps = 28/189 (14%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R      +    +  + L IAL                      LGLDLRGG+ +VLE  
Sbjct: 3   RAPVVRAVTAFAVIALSLFIAL-----------------TMTPRLGLDLRGGTQIVLETR 45

Query: 61  DEDDF--VNGFLQMYSDELRSFLKKEGIGV-FSMRQIQNKITLSFADSRFKENIADKVTL 117
           D               + LR      G+      R  + +I +     +     A+ +  
Sbjct: 46  DSPTVKADAEATDRTLEVLRRRADALGVADAPLARSGERRIIVELPGLQDPTKAAEVIGK 105

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q     +             E+ I         +  +   +  +        D    +
Sbjct: 106 TAQLTFHPVIALADATTKPKEGEQIIP-------DEDGVKLLVGPARLTGDGVEDAQAGT 158

Query: 178 ESTIQRLGS 186
           +        
Sbjct: 159 DPQQGSGWY 167


>gi|291561978|emb|CBL40788.1| protein translocase subunit secF/protein translocase subunit secD
           [butyrate-producing bacterium SS3/4]
          Length = 746

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 179/628 (28%), Positives = 305/628 (48%), Gaps = 17/628 (2%)

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH----KPVVDI 272
           V                +      Y     V + G  +  A A              V +
Sbjct: 105 VDIPGVTDANKILEELGKPGSLQFYDENWNVVLEGTDVASAKAVIYKDQQTGNNNYEVAL 164

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
           +F + G ++F +VT  N+GK +A+V D  + + P + QAI  G+A ISG  + E A  LA
Sbjct: 165 TFTDEGTKKFADVTAANVGKKIAIVYDNVMYSNPTVQQAITGGQASISGMTSYEEAENLA 224

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
           + +R GSL ++L  +    VGA LG ++I     A   G  ++ +FMI +Y   GL A  
Sbjct: 225 STIRIGSLSLELEELRSNVVGAKLGQEAITTSLKAGAIGFGIVCVFMIAVYLVPGLAASL 284

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++ L V L L LL+    TLTLP IAGI+L IG+AVD+N+++  RI+EE    ++V  ++
Sbjct: 285 ALCLYVALMLILLAAFEVTLTLPGIAGIILSIGMAVDANVIIFTRIKEEIGLGKTVHSAI 344

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
             GF++A S I D N+T LIA  VL++ G G V+GFA T+ L I++SMFTA+ + +  + 
Sbjct: 345 KTGFAKALSAIVDGNVTTLIAAAVLYWRGSGTVKGFATTLALGIVLSMFTALFVTKFTLN 404

Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG---- 568
            +       ++       + +  +  AI F+  R     IS +  +  +  +  +     
Sbjct: 405 TLY------NLGFQDQKFYGIRKEKKAINFLGKRNICFIISAVMILAGVAGMVMNKSSIG 458

Query: 569 --LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
              NY +DF+GG    V  N  + L  + S +  +     +  +   +K           
Sbjct: 459 NAFNYSLDFQGGTSTSVTFNEDMSLERISSEVVPVVESITNSADTQTQKVAGTNEVIIKT 518

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            +++      + +  +       +    E +   +S E+ R  ++   I+ + ML+YIW+
Sbjct: 519 RTLSVEERQALDEALVENFGVDESKITAESISGAVSAEMKRDAVMATAIATVFMLLYIWV 578

Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           RFK   FA  A+  L+ D+   +  +AL       TA+A +LT++GYS+N  +V++DR+R
Sbjct: 579 RFKDIRFAASAVLALVHDVLVVVACYALAKWSVGSTAIACLLTIVGYSINATIVIFDRIR 638

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +N+ L     S  D+++ SI +T  RS+ TS+  F+ V  + + G S I  FA+P+  GI
Sbjct: 639 ENINLMGPKASTVDIVNTSITQTFTRSINTSLTTFVMVFVLFIMGVSSIREFALPLMAGI 698

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833
           +    SS+ +   +   +   + K   +
Sbjct: 699 ICGTYSSVCLTGAMWYVMTTKKQKKDAV 726



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 1/182 (0%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD 75
             G          + + D          I LGLDL GG  +  +  E++     +     
Sbjct: 21  IFGFFGYDTLQKSKLVTDENGVTSQNGGIKLGLDLAGGVSITYQAKEENPSAEDMSDTQY 80

Query: 76  ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL 135
           +L+  ++         ++  N+I +          I +++           N +      
Sbjct: 81  KLQQRVQNYSSEAEVYQEGGNRINVDIPGVTDANKILEELGKPGSLQFYDENWNVVLEG- 139

Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195
                 +  I   Q   +     A+  + E  ++  D    +      +    ++   P 
Sbjct: 140 TDVASAKAVIYKDQQTGNNNYEVALTFTDEGTKKFADVTAANVGKKIAIVYDNVMYSNPT 199

Query: 196 EQ 197
            Q
Sbjct: 200 VQ 201


>gi|188587560|ref|YP_001920357.1| protein export protein SecD [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188497841|gb|ACD50977.1| protein export protein SecD [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 720

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 182/628 (28%), Positives = 334/628 (53%), Gaps = 11/628 (1%)

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           + + + TT      +V    +           +  +      E +  ++G  +  A+A  
Sbjct: 85  VAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSGNLVFKSPEGEEILTGKDVKKASAVL 144

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           + +   PVV +  ++ G + F E T   +G+ ++V +D  +LT+P +   I  G A I+G
Sbjct: 145 NQQDGNPVVSLELNDDGQKAFAEATGKYVGQKISVYMDDELLTSPTVQTQITDGSAIITG 204

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
           + ++E A  LA ++ +G+LP+ +  V  +NVGA LG+ ++     A   G+ L+ LFMI+
Sbjct: 205 STSLEDAKKLAGIINSGALPVTVKAVSVQNVGAQLGATALPNALKAGAIGIGLVFLFMIL 264

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   GL+A  ++ L + +TL + + +G TLTLP IA ++L IG+AVD+N+L+ ERIREE
Sbjct: 265 YYRVPGLLASIALTLYIAITLLIFTEIGVTLTLPGIAALLLTIGMAVDANVLIFERIREE 324

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            ++  SV  S+  GF  A S+I DSN+T ++A ++L+F G G V+GFA+T+ + I++S+F
Sbjct: 325 LKRGISVKTSVKKGFENALSSIVDSNVTTILAGLILYFLGSGTVKGFAVTLMIGIVVSLF 384

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR---ARFWGVGISILFSI 558
           T++ + + ++   +    +K +    +            Q+++        + IS++  +
Sbjct: 385 TSLVVTKLLVNLSVDIGLLKKLSNFGVKNTEDDIKTGERQYLKIIEKSKIWLSISLIVIL 444

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                LFT GLN+GIDFKGG QL +     VD   V + +++     ++    + +    
Sbjct: 445 LGCGFLFTKGLNFGIDFKGGTQLTIQLKDGVDKQEVDNIIKTYASDAVTNTINNNQYEVK 504

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                    S   T + E        +         + +G  I +EL +  ++ + ++ I
Sbjct: 505 SGDLNSEKVSSIMTELKEKYDLDENAL------LAQDEIGASIGKELTQNSLIALFVACI 558

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ML YI +RF+  F + A+   + D+  T+  +A+FGI  N   +AA+LT+IGYS+ND +
Sbjct: 559 VMLAYIGVRFELKFGIAALVATLHDVLITVSVYAIFGISVNTPFIAAILTIIGYSMNDTI 618

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V++DR+R+N K      +  ++ + S+ ET+ RS+ T+M    +++ + ++    +  F 
Sbjct: 619 VIFDRIRENSKSM-RRANPVEVANVSLTETMTRSINTTMTTLFTIVAVNIF-VPTVREFT 676

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDW 826
           IP+  GIV  A SSIF+A+P  +++ + 
Sbjct: 677 IPLIIGIVAGAYSSIFVASPTWVYLKNR 704



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 2/144 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+       L+++I  + L +A  +     ++  +      + I  GLDL+GG  +++E+
Sbjct: 1   MKKKGKSSALFTVIVLVTLFLAF-SGFKGFVVGGWEFKSFNDVIKKGLDLQGGVSVLMEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
            ED      L+   + +   + K G+    +      +I +    +   + I D ++   
Sbjct: 60  QEDKVTQDQLESTKEHISLRVNKMGVAETIVTTEGERRIRVDIPGAFDSQEIVDSLSKSG 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEI 143
             V      +             +
Sbjct: 120 NLVFKSPEGEEILTGKDVKKASAV 143


>gi|89898635|ref|YP_515745.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila
            felis Fe/C-56]
 gi|89332007|dbj|BAE81600.1| protein export proteins SecD/SecF fusion [Chlamydophila felis
            Fe/C-56]
          Length = 1404

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 183/837 (21%), Positives = 341/837 (40%), Gaps = 55/837 (6%)

Query: 41   KNRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96
             + + LG+D  GG  + L   +           +   SDEL + L K G+    +R+  +
Sbjct: 576  DSVLRLGIDFIGGKQIRLAFKDHQGKPIADKEDILKVSDELYARLNKLGVAEVEIRREGD 635

Query: 97   KITLSFADSRFK--ENIADKVTLFLQGVNSKL-NVDPKKNLLVTTTEKEISIVLSQNNID 153
             + LS   S     E I     +    VN K       +  +    +       SQ    
Sbjct: 636  NVYLSVPGSEKISSEEILGTSQMTFHVVNEKFSYYSALRYEVQRFLDYLWFTAQSQEATS 695

Query: 154  QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
                + +   +   ++      + ++  +             E         L TT  M 
Sbjct: 696  PEAINKLASYIFNNQEIRLPTSVRDAITKLQQEG----LAFPEVGSDAPSSHLDTTYSMI 751

Query: 214  FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
              K    +     M   R       +   +  +  IS  ++   +        K      
Sbjct: 752  AIKKDREDKANPLMIVFRNYALDGASLKNIRPEFAISEGYILNFSVKDSTIAQKAHNVSP 811

Query: 274  FD----------EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
             +          + G          +       V+    + +  +  A     A +SG F
Sbjct: 812  TESFHAWTAAYCQEGINGTTNSQYSSGRGWRMAVVLDGYVVSDPVLNAPLKDHASVSGKF 871

Query: 324  TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            +      LA  L++GS+     ++ E  +  +LG     +G  +I+ GL ++++ M V Y
Sbjct: 872  SHREVNRLATDLKSGSMSFVPEVLIEEVISPELGKQQRTQGIISILLGLAVLIILMSVYY 931

Query: 384  GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
               G++A  ++ LN++L  A L  L A LTL  +AGIVL +G+AVD+N+LV ERIREE  
Sbjct: 932  KFGGVIASGAVILNLLLIWAALQYLDAPLTLTGLAGIVLAMGMAVDANVLVFERIREEYV 991

Query: 444  KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             ++S+  S++ G+ +A+  IFDSN+T ++A+++L     G ++GFA+T+ + I  SMFTA
Sbjct: 992  LSRSLSQSVEAGYKKAFGAIFDSNLTTVLASLLLLILDTGPIKGFALTLIIGIFSSMFTA 1051

Query: 504  ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
            + + +   +  +     K+ +         I           R W V  S++   C    
Sbjct: 1052 LFMTKFFFMVWMN----KTQETQLHMMNKFIGIKHDFLRECKRLWMVSGSVISLGCVALG 1107

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRP--VDLSVVRSNLESLQIGD---------------I 606
                    G+DFKGG  L +       VD++  R  L                       
Sbjct: 1108 FGAWHSVLGMDFKGGYALTLNMAEQKSVDVTQFRHTLGDKFKQVGLSSRDFKITTFDSSE 1167

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGP 659
              + +  +         +   + A    L +V   +++     +  +          V  
Sbjct: 1168 KIKIYFSQNALARVQAPEIKVTEAFDPHLSVVMGILSDTGIDISSDSFKDTQNFWFKVSS 1227

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG---- 715
            + S ++ ++  + ++ +   +L+Y+ +RF+W +A  AI  LI D+  T            
Sbjct: 1228 QFSNKMRKQAFIALMGALFIILLYVSLRFEWRYAFSAICALIHDLVATCAVLVATHFFLK 1287

Query: 716  -IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             I+ +L AV A++T++GYS+N+ ++++DR+R++ +    +     LI+ ++ +TLGR+V 
Sbjct: 1288 KIQIDLQAVGALMTVLGYSLNNTLIIFDRIREDRQEKLFT-PMPILINDALQKTLGRTVM 1346

Query: 775  TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+      +L +   GG  I +FA  M  GI++   SS++IA P+LLF+     +  
Sbjct: 1347 TTATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERQR 1403


>gi|15835348|ref|NP_297107.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            muridarum Nigg]
 gi|270285519|ref|ZP_06194913.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            muridarum Nigg]
 gi|270289530|ref|ZP_06195832.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            muridarum Weiss]
 gi|301336916|ref|ZP_07225118.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            muridarum MopnTet14]
 gi|7190762|gb|AAF39543.1| secDF protein, putative [Chlamydia muridarum Nigg]
          Length = 1400

 Score =  302 bits (772), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 182/834 (21%), Positives = 344/834 (41%), Gaps = 54/834 (6%)

Query: 43   RISLGLDLRGGSHLVL-----EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
             +  G D  GG  + L     + +        +   SDEL + L K G+    M++  + 
Sbjct: 574  VLRFGTDFVGGKQIRLAFRDHQGNLVT-DKEGIDKVSDELYARLNKLGVSEVGMQREGDH 632

Query: 98   ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
            I +S   +    +     T  +           +  L          +  +  ++D+   
Sbjct: 633  IQVSVPGAANLSSADILGTSKMSFHVVNEQFSSRSPLRYEVQTFLDYLWFTARSLDKSSP 692

Query: 158  HAI---------EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
              I         E    I       IG  +           +     +   S +    G+
Sbjct: 693  KDINHLAATIFHENQGPIPANVRAAIGKLKEAGLNFSKEHEMGSACLDTQYSMIAVEKGS 752

Query: 209  TAKMSF-HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
              +++    V  N++ +G          + G  Y++   V+   + L+            
Sbjct: 753  GEQVNPLMIVFRNHALEGASLKNIRPEFAVGEGYVLNFGVKDKAVSLDSKETPVQQFH-- 810

Query: 268  PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
                  F + G                  V+    + +  +        A +SGNF+   
Sbjct: 811  -AWTSKFCQEGVNGTKNSQFSGGRGWRMAVVLDGYVISDPVLNVPLKDHASVSGNFSYRE 869

Query: 328  AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
               LA+ L++G++     I+ E  V  +LG     +G  ++  GLV+++  M V Y   G
Sbjct: 870  VNRLASDLKSGAMSFIPEILSEEVVSPELGHSQRLQGILSVFLGLVVLIALMSVYYKFGG 929

Query: 388  LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            ++A  ++ LN++L  A +  L A LTL  +AGI+L +G+AVD+N+LV ERIREE   ++S
Sbjct: 930  VIASVAVLLNLLLIWASMQYLDAPLTLSGLAGIILAMGMAVDANVLVFERIREEYLLSRS 989

Query: 448  VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
            +  S++ G+ +A+S IFDSN+T ++A+ +L     G ++GFA+T+ + I  SMFT++ + 
Sbjct: 990  LSESVEAGYKKAFSAIFDSNLTTILASALLLMLDTGPIKGFALTLIIGIFSSMFTSLFMT 1049

Query: 508  RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
            +   +  I+    K+ +         I           R W V  +++   C        
Sbjct: 1050 KFFFLIWIQ----KTRETQLHMMNKFIGVKHNFLKECKRLWVVSGAVVVLGCIGLGFGAW 1105

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVV----------------RSNLESLQIGDISFQNF 611
                G+DFKGG  L + ++                        R             + +
Sbjct: 1106 DSILGMDFKGGYALTLDSDVCAYNPDQMCSALKKRFREIGLSSRDYRVRKADSSGKVKIY 1165

Query: 612  DGEKNFLVRLQYQPGDSVAQT---------RVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
              +       Q + G S             +VL       +     S+  +   V  ++S
Sbjct: 1166 FSQNALARVEQAKGGYSEQNGADHHLAQVLQVLSDSSDATSPAAFESSRGSWFKVSGQLS 1225

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF-----FALFGIE 717
             ++  + I+ +  +   +L+Y+ +RF+W +A  AI  L+ D+  T        F L  I+
Sbjct: 1226 NKMRTQAIMALFGALGIILLYVSLRFEWRYAFSAICALMHDLLATCSVLVALHFFLHRIQ 1285

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             +L AV A++T++GYS+N+ ++++DR+R++ +    +     LI+ ++ +TLGR+V T+ 
Sbjct: 1286 IDLQAVGALMTVLGYSLNNTLIIFDRIREDRREKLFT-PMPILINDALQKTLGRTVMTTA 1344

Query: 778  AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 ++ +   GG  I +FA  M  GI++   SS++IA P+LLF+     +N+
Sbjct: 1345 TTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSSLYIAPPLLLFMVRKEEQNS 1398


>gi|153854675|ref|ZP_01995925.1| hypothetical protein DORLON_01923 [Dorea longicatena DSM 13814]
 gi|149752779|gb|EDM62710.1| hypothetical protein DORLON_01923 [Dorea longicatena DSM 13814]
          Length = 721

 Score =  301 bits (771), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 195/691 (28%), Positives = 339/691 (49%), Gaps = 42/691 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q          +  ++  +++R++Q    E+++ + G+ RI I++PG  D +++   
Sbjct: 51  ITYQVKDKNPTKEEMSDTIYKLQKRVEQYST-EASVYQEGNDRINIEIPGVTDANKILDE 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    +SF                               +  ++G  +  A+A      
Sbjct: 110 LGKPGSLSFQTAD--------------------------GETVLTGTDVKSASAKTGQDD 143

Query: 266 H---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +  V+++  + G  +F   T++NIGK +A++ DG  +++PV+   I  G+A I+G+
Sbjct: 144 MGNKEYSVELNLTKSGTSKFATATKENIGKQIAIIYDGETISSPVVRSEITGGQAYITGD 203

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           FT E A  LA+ +R G L ++L  +    VGA LG  ++     A + GL+L+ LFMI +
Sbjct: 204 FTYEEADNLASTIRIGGLKLQLEELRSNVVGAQLGEQALNTSLKAGIIGLILVFLFMIFV 263

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   GL +  ++ +   + L +L+    TLTLP IAGI+L IG+AVD+N+++  R+REE 
Sbjct: 264 YRLPGLASSLALVIYTEIVLVILNAFDVTLTLPGIAGIILSIGMAVDANVIIFARVREEM 323

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
            + +SV  SL  GF +A S I D N+T LIA  VL+F G G V+GFA T+ + I++SMFT
Sbjct: 324 ARGRSVKVSLKSGFQKAMSAIVDGNVTTLIAAAVLWFKGSGTVKGFAQTLAIGIVVSMFT 383

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A+ I R ++         K         +  + +   I F+  +     ISI   +    
Sbjct: 384 ALVITRMIVFAFYGIGIRKE-----SLYYHKMKERKPINFLGKKKVFFSISIAMILAGFV 438

Query: 563 LLFTHGLN------YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
           ++  H         Y +DFKGG  + V  ++   +  +   +  +        N   +K 
Sbjct: 439 VMGVHSAQGNGALAYSLDFKGGTSMNVKFDKDYSIDEIDKEIVPVVEKVTGDYNIQTQKV 498

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              +       +++ +   ++ K          +    E +   IS E+ +  ++ VI++
Sbjct: 499 SGTKQVVIKTVTLSLSEREKVNKALEDNFGVKESDITAENISSTISNEMRQDAVIAVIVA 558

Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I ML+YIW RFK   FA  A+  L+ D+   L F+A+  I    T +A +LT++GYS+N
Sbjct: 559 TIFMLLYIWFRFKDVRFATSAVLALLHDVLVVLAFYAVSRISVGGTFIACMLTIVGYSIN 618

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V++DR+R+ + L   +    +L++K I +TL RS+YTS+  FI V  + + G S I 
Sbjct: 619 ATIVIFDRIREELPLMKRNTDLSELVNKCITQTLTRSIYTSLTTFIMVAVLFIMGVSSIR 678

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            FA P+  GIV    SS+ +   +   +   
Sbjct: 679 EFAAPLMVGIVCGGYSSVCVTGALWYVMKTK 709



 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 76/181 (41%), Gaps = 4/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +VG ++  + +   +   II  I + +++   ++    L +   L++     L    
Sbjct: 229 RSNVVGAQLGEQALNTSLKAGIIGLILVFLFMIFVYRLP-GLASSLALVIYTEIVLVILN 287

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F +   L  +A ++  IG +V+  V+++ R+R+ M       S +  +     + +   
Sbjct: 288 AFDVTLTLPGIAGIILSIGMAVDANVIIFARVREEMA---RGRSVKVSLKSGFQKAMSAI 344

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           V  ++   I+   +   G   +  FA  +A GIVV+  +++ I   I+   Y    +   
Sbjct: 345 VDGNVTTLIAAAVLWFKGSGTVKGFAQTLAIGIVVSMFTALVITRMIVFAFYGIGIRKES 404

Query: 833 I 833
           +
Sbjct: 405 L 405



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 7/143 (4%)

Query: 1   MRNNP-WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+ +   L +L ++I  +GL   +   + +S             I LGLDL GG  +  +
Sbjct: 1   MKKSKSILSLLLAVILIVGLGFTVITGIGKSKSGAM------KNIKLGLDLAGGVSITYQ 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           V + +     +     +L+  +++        ++  ++I +          I D++    
Sbjct: 55  VKDKNPTKEEMSDTIYKLQKRVEQYSTEASVYQEGNDRINIEIPGVTDANKILDELGKPG 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKE 142
                  + +         +   
Sbjct: 115 SLSFQTADGETVLTGTDVKSASA 137


>gi|212638566|ref|YP_002315086.1| bifunctional preprotein translocase subunit SecD/SecF
           [Anoxybacillus flavithermus WK1]
 gi|212560046|gb|ACJ33101.1| Preprotein translocase subunits SecDF [Anoxybacillus flavithermus
           WK1]
          Length = 748

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 187/697 (26%), Positives = 342/697 (49%), Gaps = 28/697 (4%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
             +++    +  ++  + +RI+ +G+SE  I   G+ RI +QL G +D ++ R++L T A
Sbjct: 53  EGEKITKDVLLSTVSALNKRINVLGVSEPRIDVEGNDRIRVQLAGVKDQNKAREILSTEA 112

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           K++F  V         M G   +       +  + K  +    +    AN   +  + V+
Sbjct: 113 KLTFRDV----HDNVLMDGSDLVEGGAKQTFDDKGKPSV---AIQLKDANKFKEVTQKVL 165

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            ++ + +           +           + ++A  +N+        I GNFT+E A  
Sbjct: 166 SMAPNNVLVIWLDFEEGVDSYAKEVGKEHPKFISAAQVNEVFNQTDVSIVGNFTVEEAKQ 225

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +L AG+LP++L  +   +VGA  G  ++ K   A + G+ L+ LFM++ Y   G+VA
Sbjct: 226 LADLLNAGALPVELKEIYSTSVGAQFGEQALQKTIFAGIIGIALVFLFMLMFYRLPGIVA 285

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ + + L L +   +   LTLP IA ++LG+G+AVD+NI+  ERI++E +  +S+  
Sbjct: 286 VVTLSVYIYLILLVFDWMNGVLTLPGIAALILGVGMAVDANIITYERIKDELKLGKSLMS 345

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +  +G   +++TI D+NIT +IA VVLF +G  +V+GFA  + +SIL S  TA+   R +
Sbjct: 346 AYRIGNRGSFATILDANITTIIAGVVLFAYGTSSVKGFATMLIISILASFITAVYGTRLL 405

Query: 511 MIFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +  +++ +                           +      + F++       IS    
Sbjct: 406 LGLLVKSRLFDKKPHYFGVNPKDILDIAKVTDDTDVPTKFARLDFVKRSKLFFAISGAMF 465

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              + LL T  LN GIDF  G ++ +++ + +    V+  L+ LQ+              
Sbjct: 466 AIGLVLLLTAKLNLGIDFSSGTRVDLMSEKSLTTEEVKQELKQLQLEPKDIVLSGNNNEM 525

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +       D    +++    K+K           N   V P + +EL R   + V+I++
Sbjct: 526 AIVRFLGVLDQKEISKLKSHFKEKYG------VEPNVSTVSPTVGKELARNAFISVLIAS 579

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           I ++IY+ IRF+ Y A+ AI  L+ D    + FF+L  +E +LT +AAVLT++GYS+ND 
Sbjct: 580 IGIIIYVTIRFEMYMAIAAIVALLHDAFFIIAFFSLTRLEVDLTFIAAVLTIVGYSINDT 639

Query: 738 VVVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           +V +DR+R  M  +   T    +D+++K++ +T GRSV T +    +V+ + ++G   I 
Sbjct: 640 IVTFDRIRYLMKKRKVKTVDDLKDVVNKALQQTFGRSVNTVLTVVFTVVALLLFGSEAIR 699

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +F+  +  G++    SS+FIAA + L     + K  +
Sbjct: 700 NFSFALLAGLISGTYSSLFIAAQLWLIWKAKQLKKGK 736



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/134 (11%), Positives = 45/134 (33%), Gaps = 18/134 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           + +  +     ++   G++      +                I LGLDL+GG  ++ EV 
Sbjct: 3   KRSRIIAFFLLVVLLGGMMGTTAEKI-------------VKNIKLGLDLQGGFEILYEVK 49

Query: 61  ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
              + +      L      L   +   G+    +  +  ++I +  A  + +    + ++
Sbjct: 50  PTKEGEKITKDVLLSTVSALNKRINVLGVSEPRIDVEGNDRIRVQLAGVKDQNKAREILS 109

Query: 117 LFLQGVNSKLNVDP 130
              +     ++ + 
Sbjct: 110 TEAKLTFRDVHDNV 123


>gi|29839945|ref|NP_829051.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila
            caviae GPIC]
 gi|29834292|gb|AAP04929.1| secDF protein, putative [Chlamydophila caviae GPIC]
          Length = 1404

 Score =  301 bits (770), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 183/835 (21%), Positives = 336/835 (40%), Gaps = 51/835 (6%)

Query: 41   KNRISLGLDLRGGSHLVLEV---DEDDFVNGF-LQMYSDELRSFLKKEGIGVFSMRQIQN 96
             N +  G+D  GG  + L           +   +   SDEL + L K G+    +R+  +
Sbjct: 576  DNVLRFGIDFIGGKQIRLAFKDHQGKQLTDKEGILKVSDELYARLNKLGVAEVEIRREGD 635

Query: 97   KITLSFADSRFK--ENIADKVTLFLQGVN------SKLNVDPKKNLLVTTTEKEISIVLS 148
             + LS   S     E I     +    VN      S L  + ++ L             S
Sbjct: 636  NVHLSVPGSTKISSEEILGTSQMTFHVVNEKFSHYSALRYEVQRFLDYLWFTARSQETTS 695

Query: 149  QNNIDQVISHAIEQSMEIIRQRIDQIGIS---ESTIQRLGSHRILIQLPGEQDPSRLRQL 205
               I+++ S         +   + +       E                         + 
Sbjct: 696  PEAINKLASRIFNDQSFPLPTSVKEAVAKLQQEGLAFPEVGGEAASSHLDTTYSMIAIEK 755

Query: 206  LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                       V  N +  G          + G  Y++   V+ + I       +     
Sbjct: 756  NIEGRANPLMIVFRNYALDGASLKNIRPEFAVGEGYILNFSVKDTAIAQRAHNISPTESF 815

Query: 266  HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            H         + G          +       V+    + +  +  A     A +SG F+ 
Sbjct: 816  HAWTAAYC--QEGVSGTTNSQHSSGRGWRMAVVLDGYVVSDPVLNAPLKDHASVSGKFSH 873

Query: 326  ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                 LA  L++GS+     ++ E  +  +LG     +G  +I  GL ++++ M V Y  
Sbjct: 874  REVNRLATDLKSGSMSFVPEVLSEEVISPELGKQQRTQGIISICLGLAVLIILMSVYYKF 933

Query: 386  WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             G++A  ++ LN++L  A L  L A LTL  +AGIVL +G+AVD+N+LV ERIREE   +
Sbjct: 934  GGVIASGAVILNLLLIWAALQYLDAPLTLTGLAGIVLAMGMAVDANVLVFERIREEYLLS 993

Query: 446  QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            +S+  S++ G+ +A+S IFDSN+T ++A+++L     G ++GFA+T+ L I  SMFTA+ 
Sbjct: 994  RSLTQSVEAGYKKAFSAIFDSNLTTILASLLLLVLDTGPIKGFALTLILGIFSSMFTALF 1053

Query: 506  IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
            + +   +  +     K+ +         I           R W V  S++   C      
Sbjct: 1054 MTKFFFMVWMN----KTQETQLHMMNKFIGIKHDFLKECKRLWMVSGSVIVLGCVALGFG 1109

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVV-----------------RSNLESLQIGDISF 608
                  G+DFKGG    +  +    + VV                 R             
Sbjct: 1110 AWNSVLGMDFKGGYAFTLDMSDQKAVDVVQFRNKLGDKFKQVGLSSRDFKIKTLDSSEKI 1169

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGPKI 661
            + +  +         +          L +V   +++    ++ ++          V  + 
Sbjct: 1170 KIYFSQNALTRVQASEKQVFETPDPNLSLVMGILSDTGIDTSSESFKDTQNFWLKVSGQF 1229

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG-----I 716
            S ++ ++  + +  +   +L+Y+ +RF+W +A  A+  LI D+  T             I
Sbjct: 1230 SNKMRQQACIALAGALAIILLYVSLRFEWRYAFSAVCALIHDLVATCAVLVATHFFLQKI 1289

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + +L AV A++T++GYS+N+ ++++DR+R++ +    +     LI+ ++ +TLGR+V T+
Sbjct: 1290 QIDLQAVGALMTVLGYSLNNTLIIFDRIREDRQEKLFT-PMPILINDALQKTLGRTVMTT 1348

Query: 777  MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  +L +   GG  I +FA  M  GI++   SS++IA P+LLF+     +N 
Sbjct: 1349 ATTLSVLLILLFVGGGSIFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKEERNR 1403


>gi|294501372|ref|YP_003565072.1| protein-export membrane protein SecDF [Bacillus megaterium QM
           B1551]
 gi|294351309|gb|ADE71638.1| protein-export membrane protein SecDF [Bacillus megaterium QM
           B1551]
          Length = 745

 Score =  301 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 194/694 (27%), Positives = 340/694 (48%), Gaps = 26/694 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D +   A+  ++E +RQR+D +G+SE +IQ  G+ RI +QL G  +  + R LL T A 
Sbjct: 54  GDVIDKKALNSTVEALRQRVDVLGVSEPSIQIEGNDRIRVQLAGVTNQKQARDLLSTQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V       G        + S          +++              +   P   
Sbjct: 114 LTFRDVNDKVLMDGTDLAQGGAKQSFDQSNQPSVSLKLKNAKKFEKITRELSQKPAPNNL 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           I          +E  +D+  K         +  A V +           GNFT+++A  L
Sbjct: 174 IVIWLD-----YEEGKDSYQKEATKQNPKYLSAASVSSVLTQPDVEISGGNFTVKSATQL 228

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AGSLP+KL+ +   +VGA  G ++++    A + G+ +I L+M+  Y   GL+A 
Sbjct: 229 AELLNAGSLPVKLDELYSTSVGAQFGEEALHTTILAGIIGIGIIFLYMLFFYRLPGLIAV 288

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + L L +   +   +TLP IA ++LG+G+AVD+NI+  ERI++E +  +SV  +
Sbjct: 289 ITLSFYIYLNLVVFDWMHVVMTLPGIAALILGVGMAVDANIITYERIKDELKTGRSVISA 348

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TIFD+NIT ++A +VLFF+G  +V+GFA T+ + I++S  TA+   R +M
Sbjct: 349 YRAGNRRSLATIFDANITTMLAALVLFFYGQSSVKGFATTLMIGIVLSFVTAVYGTRLLM 408

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++  +           +   I D                I F++ R      S +  I
Sbjct: 409 SLLVNSRWFDKKPGYFGVKKEQIHDLSKDDGTTVLPTAWDKIDFVKYRKAFFTFSSVLVI 468

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I  +    LN GIDF  G ++ + AN  V  + ++  ++SL I            +  
Sbjct: 469 IGIISVAVFRLNLGIDFTSGTRIEIPANHTVTQAEIQREMKSLDIKTDDVVITGKSNDTG 528

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V       +      + +  K K           N   V P + +EL +  ++ ++I++I
Sbjct: 529 VVRVVGVLNKKEIANLKDHFKDKYGSE------PNVSTVSPTVGKELAKNAMMAIVIASI 582

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF++Y AL A+  L+ D    +  F+L  +E +LT +AAVLT++GYS+ND +
Sbjct: 583 GIIIYVTIRFEFYMALAAVLALLHDAFFIVTVFSLTKLEVDLTFIAAVLTIVGYSINDTI 642

Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R+NM+ + +        +++ S+ ET  RS+ T +   I+V+ + ++G   I +
Sbjct: 643 VTFDRIRENMQKFKSKSFDDLAFIVNLSLRETFTRSMNTVLTVVIAVVALLLFGSESIQN 702

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           F+I +  G+++ A SS+FIAA + L     + K 
Sbjct: 703 FSIALLVGLILGAYSSVFIAAQLWLVWKGKQLKR 736



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 77/178 (43%), Gaps = 4/178 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             VG +   E +   I+  II    + +Y+   ++    L A+ TL   I   L  F   
Sbjct: 247 TSVGAQFGEEALHTTILAGIIGIGIIFLYMLFFYRLP-GLIAVITLSFYIYLNLVVFDWM 305

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            +   L  +AA++  +G +V+  ++ Y+R++  +K   T  S           +L     
Sbjct: 306 HVVMTLPGIAALILGVGMAVDANIITYERIKDELK---TGRSVISAYRAGNRRSLATIFD 362

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++   ++ L +  +G S +  FA  +  GIV++  ++++    ++  + + R  + +
Sbjct: 363 ANITTMLAALVLFFYGQSSVKGFATTLMIGIVLSFVTAVYGTRLLMSLLVNSRWFDKK 420



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 113/381 (29%), Gaps = 15/381 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQN 96
             I LGLDL+GG  ++ +V             L    + LR  +   G+   S++ +  +
Sbjct: 30  KDIKLGLDLQGGFEILYKVSPAKKGDVIDKKALNSTVEALRQRVDVLGVSEPSIQIEGND 89

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQV 155
           +I +  A    ++   D ++         +N     +   +     + S   S      +
Sbjct: 90  RIRVQLAGVTNQKQARDLLSTQANLTFRDVNDKVLMDGTDLAQGGAKQSFDQSNQPSVSL 149

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
                ++  +I R+   +   + + +  +       +   +++ ++      + A +S  
Sbjct: 150 KLKNAKKFEKITRELSQKP--APNNLIVIWLDYEEGKDSYQKEATKQNPKYLSAASVSSV 207

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS-------GIHLNGATANFDPKTHKP 268
              P+    G  F V+               V++        G        +        
Sbjct: 208 LTQPDVEISGGNFTVKSATQLAELLNAGSLPVKLDELYSTSVGAQFGEEALHTTILAGII 267

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
            + I F  M            I     + L+  V     +   +P   A I G      A
Sbjct: 268 GIGIIFLYMLFFYRLPGLIAVITLSFYIYLNLVVFDWMHVVMTLPGIAALILGVGMAVDA 327

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
            I+        L    +++     G      +I+      +   +++  +       +  
Sbjct: 328 NIITYERIKDELKTGRSVISAYRAGNRRSLATIFDANITTMLAALVLFFYGQSSVKGFAT 387

Query: 389 VADFSIFLNVILTLALLSLLG 409
                I L+ +  +    LL 
Sbjct: 388 TLMIGIVLSFVTAVYGTRLLM 408


>gi|297190022|ref|ZP_06907420.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297150338|gb|EFH30568.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 774

 Score =  301 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 200/717 (27%), Positives = 354/717 (49%), Gaps = 38/717 (5%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              I +    +        A +++ME++R+R+D +G++E ++ R G  RI+++LPG +DP
Sbjct: 38  GTRIVLETRDSPTVTADREATDRAMEVLRRRVDGLGVAEPSLARSGERRIVVELPGLKDP 97

Query: 200 SRLRQLLGTTAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
               +++G TA+++FH V      P ++       V    D+ G+   +           
Sbjct: 98  REAAKVIGRTAQLTFHPVTGTSEGPASAPAKDGARVLADPDAPGSFLRLGPTALTGEGVE 157

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------- 301
           +        +     VD+SF    A+++  +T +      A                   
Sbjct: 158 DAEAVLDTLEGRGWTVDLSFRGDAAKQWARITGEAACAAPADPARRVAIVLDDAVVSAPG 217

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           + ++      I  G AQI+G FT + A  LAA+++ G+LP+ +  VE+  VG  LG++++
Sbjct: 218 MQSSVPCGAGITGGSAQITGGFTPDEARDLAALVKGGALPVPVTTVEQSTVGPTLGAEAV 277

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A V GL+   LF+IV+Y   GL+A  ++ L  +++ A +  LGATLTLP +AG V
Sbjct: 278 RASAAAAVIGLLCTGLFVIVVYRLLGLLATVALALYGLISYAAVVALGATLTLPGLAGFV 337

Query: 422 LGIGLAVDSNILVNERIREENRK--------NQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L IG+AVD+N+LV ER REE  +         + +  SL  GF +A+S + DSNIT L+A
Sbjct: 338 LAIGIAVDANVLVFERAREEFTRPGGRGGTKRRDLKSSLRTGFGKAWSAVADSNITTLLA 397

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLS 529
             +LF F  G V+GF +T+ + +L SM +A+ I R +  + +    ++       +    
Sbjct: 398 AGLLFVFATGPVKGFGVTLAIGVLASMVSAMLITRLLAEWALSVPYVRRRPALTGMAGPG 457

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           R          + MR R   +GI     + ++  +   G+ +G++F GG  +   A R V
Sbjct: 458 RLRERLARRTPRLMRHRRRWLGICSGLLLLAVAGIGVRGVEFGVEFTGGRVVQYTAERSV 517

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D    R  + +    D   Q+ D                       E ++  + ++    
Sbjct: 518 DADTAREAVVAAGFPDAVVQSTDDNG-------ISVRTKERGDDEQERIRGALDDVAGGL 570

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           +++  +++GP +  EL    ++ + ++  A L+Y+ +RF+W FA  A+  +  D+   +G
Sbjct: 571 SVERDDLIGPSLGSELRMYALIALGVAVAAQLLYLSVRFRWTFATAAVVAMAQDVALVVG 630

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            FA  G   +   +AA+LT++GYSVND VVV DR+R+ ++    SI    L D+++ +TL
Sbjct: 631 LFAWLGKPMDSVFLAALLTVVGYSVNDTVVVLDRLRE-LRRTGGSIPLETLADRAVAQTL 689

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            R+V T M A   ++ +AV GG  +  F+I +  G+V+  +S++F A P+ L +   
Sbjct: 690 PRTVNTGMGALFVLVALAVLGGDSLTDFSIALLAGVVLGMASTVFTAMPVALLLQAR 746



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 60/258 (23%), Gaps = 26/258 (10%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV-DEDD 64
           W  ++   +  + L +AL                      LGLDLRGG+ +VLE  D   
Sbjct: 8   WRALIALAVVAVSLYVAL-----------------TTPARLGLDLRGGTRIVLETRDSPT 50

Query: 65  FVNGF--LQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
                       + LR  +   G+   S+ +   + I +     +     A  +    Q 
Sbjct: 51  VTADREATDRAMEVLRRRVDGLGVAEPSLARSGERRIVVELPGLKDPREAAKVIGRTAQL 110

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST- 180
               +    +        +    +         +       + E +      +   E   
Sbjct: 111 TFHPVTGTSEGPASAPAKDGARVLADPDAPGSFLRLGPTALTGEGVEDAEAVLDTLEGRG 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S R        +                   VL +               +    
Sbjct: 171 WTVDLSFRGDAAKQWARITGEAACAAPADPARRVAIVLDDAVVSAPGMQSSVPCGAGIT- 229

Query: 241 YLVEDKVEISGIHLNGAT 258
                  +I+G       
Sbjct: 230 ---GGSAQITGGFTPDEA 244


>gi|291522838|emb|CBK81131.1| protein translocase subunit secF/protein translocase subunit secD
           [Coprococcus catus GD/7]
          Length = 723

 Score =  301 bits (769), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 201/688 (29%), Positives = 348/688 (50%), Gaps = 21/688 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  + + D   S  +  ++  ++QR++     E+ + + G++R+ + +PG  D  ++   
Sbjct: 52  ITYEADEDNPSSEDMNDTVYKLQQRVEAWST-EAEVYQEGTNRVNVDIPGVYDAEKILSE 110

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    +SF +   + +    +         DG   +V  +   S    +   +  +   
Sbjct: 111 LGNPGSISFCEAKSDAATGKEVL--------DGYCEVVGGEGIKSAQATSQKDSYGNT-- 160

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            + VV + F + GA+ F E T  NIGKP+ ++ DG++++ P +NQAI +G+  I GNFT 
Sbjct: 161 -QYVVSLMFTDEGAKAFAEATARNIGKPIYIIYDGKIISYPTVNQAITNGQCVIEGNFTY 219

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +    LA  +RAG L ++LN +  + V A LG +++     A   GLV+++LFMIV+Y  
Sbjct: 220 DDVNSLATTIRAGVLKLQLNEISSKVVSAKLGDEAVKTSLMAGAIGLVVVMLFMIVVYWI 279

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G+ A  ++ L V   L  L+ L  TLTLP IAGI+L +G+AVD+N+++  RIREE    
Sbjct: 280 PGVAAALALLLYVAAMLCFLNGLDVTLTLPGIAGIILSVGMAVDANVIIFTRIREEIAAG 339

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           ++V  ++ +GF +A S + D NIT LIA  VL+  G G ++GFAIT+ L I++SMFTA++
Sbjct: 340 KNVREAIKIGFGKALSAVIDGNITTLIAAAVLYLKGTGTIKGFAITLALGIVLSMFTALA 399

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           I R +++ +       +          +   C   +           +   S+       
Sbjct: 400 ITRFVLMALYGIGFKDAKFYGKQKEAKVKNFCGMKKITYVIAVICICAGFVSMGVHASAG 459

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDL----SVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
              LNY +DF GG  + V     +++          L   + G    Q  +   +  + +
Sbjct: 460 NKALNYSLDFTGGTAMTVNFKDYLEVPGSDEDDLRKLFESEAGTTDIQFQNVSGSPEIVI 519

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
           +    DS  +  V + + +K             E +   IS E+    I+ VII+ + ++
Sbjct: 520 KTPVLDSEHRAAVKDALMEKYALEQSDI---TEENISGTISGEMRTNAILSVIIAGVFIM 576

Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           IYIW+RF+   F  GAI  L+ D+   L  +++  I    T +A +LT++GYS+N  +VV
Sbjct: 577 IYIWVRFRDIKFGAGAIIALLHDVLVVLAVYSIARIPVGTTFIACMLTIVGYSINATIVV 636

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           YDR+R+N        +  ++++ SI++TL RS+ TS+   I VL + + G + I  FA+P
Sbjct: 637 YDRVRENSHTMLK-ATTEEIVNTSISQTLSRSINTSLTTLIMVLLIYIMGVTSIKEFALP 695

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRA 828
           M  GI+    SS+FI+  I   +   + 
Sbjct: 696 MMAGIIAGTFSSVFISGTIWAVMKGKKK 723



 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 88/180 (48%), Gaps = 4/180 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           ++++V  K+  E ++  ++   I  + +++++ + + W   + A   L+L +   L F  
Sbjct: 242 SSKVVSAKLGDEAVKTSLMAGAIGLVVVMLFMIVVY-WIPGVAAALALLLYVAAMLCFLN 300

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              +   L  +A ++  +G +V+  V+++ R+R+ +       + R+ I     + L   
Sbjct: 301 GLDVTLTLPGIAGIILSVGMAVDANVIIFTRIREEIAA---GKNVREAIKIGFGKALSAV 357

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+   + + G   I  FAI +A GIV++  +++ I   +L+ +Y    K+A+
Sbjct: 358 IDGNITTLIAAAVLYLKGTGTIKGFAITLALGIVLSMFTALAITRFVLMALYGIGFKDAK 417



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/116 (16%), Positives = 42/116 (36%), Gaps = 6/116 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   WLV++  ++              +  +           I LGLDL GG ++  E D
Sbjct: 4   KKKSWLVLIVVVLMIAACGYVSAYGYGKDHIG------TAKNIKLGLDLAGGVNITYEAD 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           ED+  +  +     +L+  ++         ++  N++ +        E I  ++  
Sbjct: 58  EDNPSSEDMNDTVYKLQQRVEAWSTEAEVYQEGTNRVNVDIPGVYDAEKILSELGN 113


>gi|290955188|ref|YP_003486370.1| SecDF protein-export membrane protein [Streptomyces scabiei 87.22]
 gi|260644714|emb|CBG67799.1| putative SecDF protein-export membrane protein [Streptomyces
           scabiei 87.22]
          Length = 752

 Score =  300 bits (768), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 203/725 (28%), Positives = 332/725 (45%), Gaps = 46/725 (6%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +I +     +     S A ++++E++R RID +G++E T+ R G +RI+++LPG QDP
Sbjct: 37  GTQIVLETRPTDTTPADSEATDRTLEVLRGRIDALGVAEPTLTRSGDNRIVVELPGVQDP 96

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKG------------------FMFGVRFLRDSDGNQY 241
           +   ++LG TA+++FH+VL   +                        G   L D  G   
Sbjct: 97  AEAAEVLGRTARLTFHQVLGTTTADATDKNADRAEEKEQAKEEKRKLGDTVLADESGTLL 156

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN------------ 289
            +E            A            V + F+  G   +  +T               
Sbjct: 157 RLEAAALTGQDVKEAAARLDQQNGTGWHVTLDFEGAGGDGWARLTGRAACAPAGDPARRV 216

Query: 290 -IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
            I     ++   ++  +      I  G  QI+G+F  + A  LA ++  G+LP+ +  VE
Sbjct: 217 AIVLDDKIISSPQIDPSVRCETGISGGSTQITGSFGADEAKELALLINGGALPVPVENVE 276

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           +R VG  LG+++I     A   G  L  LF+I +Y   G++A  ++    +++ A L+ L
Sbjct: 277 QRTVGPTLGAEAIEASAWAAAVGTTLTALFIIAVYRLMGVLATVALLCYGLISYAALAAL 336

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDS 466
           GATLTLP +AG VL IG+AVD+N+LV ER REE   ++  S   +L  GF  A+S I DS
Sbjct: 337 GATLTLPGLAGFVLAIGMAVDANVLVFERAREEYAAQRRPSPRSALTAGFRGAFSAITDS 396

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI- 525
           N+T LIA  +LFF   G VRGF +T+G+ +L SMF+A+ I R +         ++     
Sbjct: 397 NVTTLIAAGLLFFLASGPVRGFGVTLGIGVLASMFSALVITRVLADHAAFRPSVRRRPRL 456

Query: 526 ---NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                             Q MR     +  S +    ++  +   GL++GI+F GG  + 
Sbjct: 457 TGIARTGAVRDRLTRTPPQLMRRPRRWLAASAVVLAVAVAGIGVRGLDFGIEFTGGRLVE 516

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                PVD    R+ L          Q                            V   +
Sbjct: 517 YTTT-PVDPDRARAALADAGFPRAVVQTSGDNG-------LTVRTERLSEAQAAAVTDTV 568

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +   +     E +GP + +EL    ++ + ++  A L+Y+  RF+W F   A+  L  
Sbjct: 569 GTLTDRADKVRDEAIGPSLGKELRNGALIALAVALGAQLLYLAARFRWLFGTSAVAALAH 628

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+   +G FA  G   +   +AA+LT+IGYSVND VVV+DR+R  +     +  F  + +
Sbjct: 629 DVVILVGVFAWLGKPVDGVFLAALLTVIGYSVNDSVVVFDRVRD-LGRVDRAAPFAAVAN 687

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +++ +TL R+V T M A   +  +AV GG  +  FA+ +  G+ V   SS+F A P+ + 
Sbjct: 688 RALLQTLPRTVNTGMGAAFILTALAVLGGDSLTDFALALLIGLAVGTYSSMFTATPLAVE 747

Query: 823 IYDWR 827
           ++  R
Sbjct: 748 LHRRR 752


>gi|302385030|ref|YP_003820852.1| protein-export membrane protein SecD [Clostridium saccharolyticum
           WM1]
 gi|302195658|gb|ADL03229.1| protein-export membrane protein SecD [Clostridium saccharolyticum
           WM1]
          Length = 750

 Score =  300 bits (767), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 194/693 (27%), Positives = 336/693 (48%), Gaps = 39/693 (5%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   +   +  ++ ++  ++QR+      E+ + + G++RI + +PG  D + + + 
Sbjct: 77  ITYQAKEENPSAEDMKDTIYKLQQRVQNYST-EAEVYQEGNNRINVDIPGVSDANTILEE 135

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    + F                       GNQ      V      +           
Sbjct: 136 LGKPGSLIFADETGKTILN-------------GNQVATAKPVITENNGIKEYM------- 175

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
               VD++F E G   F +VT  N+GK +A++ DG++ + PV+ +AI  G+ QISG  + 
Sbjct: 176 ----VDLTFTEEGKNLFADVTTKNVGKRIAIIYDGKMYSNPVVREAITQGQCQISGMTSY 231

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA+ +R GSL ++L  +    VGA LG ++I     A   G  ++ +FM+V+Y  
Sbjct: 232 EEAETLASTIRIGSLSLELEELRSNVVGAKLGQEAITTSLKAGAIGFAILAVFMVVVYLI 291

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G+ +  ++ + V + L LLS    TLTLP +AGI+L +G+AVD+N+++  RI+EE    
Sbjct: 292 PGIASVIALSIYVGIILVLLSAFEVTLTLPGVAGIILSVGMAVDANVIIFTRIKEEIGYG 351

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           ++V  ++  GF++A S I D N+T LIA  VLF+ G G V+GFA T+ + I++SM TA+ 
Sbjct: 352 KTVKSAIQAGFNKALSAIIDGNVTTLIAAGVLFWRGSGTVKGFASTLAIGIVLSMITALF 411

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           I + ++  +        +       + +      I+F+  +      S+L  +  +  L 
Sbjct: 412 ITKFVLNMLF------HLGFEDPKYYGIKKAGKVIRFLSKKKLWFAGSLLVIVVGLAFLG 465

Query: 566 THGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
            +        NY ++FKGG    V  N  + L  + S +  +  G     +   +K    
Sbjct: 466 VNKSQTGSILNYSMEFKGGTSTNVTFNEDMSLEKISSEVVPVVEGITKDADVQTQKVAGT 525

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                   ++       + K  +      S     E +   IS+E+ R  ++ VII+ I 
Sbjct: 526 NEVIIKTRTLTVDEREALNKAMVDHFGVESEKITAESISGAISQEMKRDAMIAVIIATIC 585

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           ML+YIW RFK   FA  A+  L+ D+   L F+AL       T +A +LT++GYS+N  +
Sbjct: 586 MLLYIWFRFKDIRFAGSAVLALVHDVLIVLTFYALLKWSVGSTFIACMLTIVGYSINATI 645

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V++DR+R+ +K     +   ++++ SI++TL RS+ TS+  FI V  + + G S I  FA
Sbjct: 646 VIFDRIREYLKTQVK-LGLEEVVNLSISQTLTRSINTSLTTFIMVFVLYILGVSSIREFA 704

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +P+  GIV    SS+ I   +   +   +    
Sbjct: 705 LPLMVGIVCGTYSSVCITGSLWYVMTVQKKGKK 737



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 43/125 (34%), Gaps = 11/125 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M++N    +L  ++    + +                    + I LGLDL GG  +  + 
Sbjct: 33  MKSNKGKGLLGLIVSLALVGLFAYFGYTTM-----------SDIKLGLDLAGGVSITYQA 81

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            E++     ++    +L+  ++         ++  N+I +          I +++     
Sbjct: 82  KEENPSAEDMKDTIYKLQQRVQNYSTEAEVYQEGNNRINVDIPGVSDANTILEELGKPGS 141

Query: 121 GVNSK 125
            + + 
Sbjct: 142 LIFAD 146


>gi|297563000|ref|YP_003681974.1| protein-export membrane protein SecD [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296847448|gb|ADH69468.1| protein-export membrane protein SecD [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 885

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 198/886 (22%), Positives = 362/886 (40%), Gaps = 102/886 (11%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE----V 60
            W   L S++  +    A     P+                LGLDL GG+ +VLE     
Sbjct: 10  RWTRALISLLVILVAFGAAWFIPPR----------------LGLDLSGGTQIVLETQDGP 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFL 119
           +     +       + LR  + + G+   +  R  +N+I +     +     A  +    
Sbjct: 54  EGTPANSENTDQVVEVLRQRIDRLGVSEATMSRSGENRIIVELPGVQDPAEAAQIIGQTA 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q             L V     +     +  +         +++             + S
Sbjct: 114 QLSFH-------PVLGVGQAGGQGVQAPAPGDSANAPQATADEA------------RAPS 154

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                G         GE    +L +L+     M   +     S +     V  L DSDG 
Sbjct: 155 DAAAEGGDEAAEGGGGEMTQEQLEELMAQQGGMGGQQPPAGPSAENPEDVVMTLPDSDGT 214

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN-------IGK 292
           Q  + +         +   A       +  V+++F   GA ++  +T D          +
Sbjct: 215 QLQLGETAIKGDQVASAEAALDSVNRAQWTVNVNFRGEGADQWTALTADAACYEQGDPRR 274

Query: 293 PLAVVLDGRVLTAPVI-------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
            +A+VLDG++++AP +            +     S +FT ETA  LA ++  GSLP+ + 
Sbjct: 275 RVAIVLDGQIISAPEVNPEFSCDVGMPGNTTTITSPDFTSETANDLAVLIEGGSLPLPVT 334

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            V+ + VG  LG+++I     A + GL    L++ ++Y   G +A  ++    ++    L
Sbjct: 335 EVQRQTVGPTLGAEAIQASAVAAILGLAFTTLYITLVYRLVGFLAALALGFYTLIAYGAL 394

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN-------------------- 445
             + ATLTLP +AG VL IG+A+D+N+L+ ER REE+++                     
Sbjct: 395 VAINATLTLPGLAGFVLAIGMAIDANVLIFERTREEHQRQAKVYEANKSAGLRDATEDEA 454

Query: 446 -----------------QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
                             S+  +  +G  +A+S + D+NIT LIA  +LFFF  G V+GF
Sbjct: 455 AKAESGVLTRKRRRAVPPSLEKAFVVGSRKAWSAVLDTNITTLIAAALLFFFASGTVQGF 514

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLIPDCIAIQFMR 544
            +T+ +  L+SMF+A+ I R  + + +R   ++        N +              M 
Sbjct: 515 GVTLSIGTLVSMFSALVIARVFVEWAVRRAVVRKHPAVSGLNRIGGVRTWLVEKNPDLMG 574

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ--LGVLANRPVDLSVVRSNLESLQ 602
            R  G+ ++ L    ++        N G++F GG      V +   V +   RS + +L 
Sbjct: 575 HRAKGLIVAGLIVAAAVAAPLIRDTNLGVEFTGGRVLEYEVTSGEGVSVDEARSVISALD 634

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                        +  + ++               +   + E      + + E++GP + 
Sbjct: 635 FPGSDTAVVQESGDGDISVR----TGSISDDDAARIADALGEQTGGVELVSDELIGPSMG 690

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            EL  + ++ +  +    ++Y+  RF+W F +  + +L  ++   +G F   G   +   
Sbjct: 691 DELRNRALIALGAALALQMVYLAWRFRWSFGVSTMLSLAFNLVLVIGLFIWLGKPIDGVF 750

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +AA+L++IG+SVND VVV+DR+R        S  F ++ ++++  TL R+V TS+ A I 
Sbjct: 751 LAALLSVIGFSVNDTVVVFDRVRDEWARDERSK-FSEIANRAVLNTLPRTVNTSIGALII 809

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  +   GGS +  F+I M  G+V    S+IF+A P+ +++  W  
Sbjct: 810 LGFLTFLGGSSLQDFSIAMLVGLVTGVLSTIFVAVPLAIWLQRWDR 855



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 71/246 (28%), Gaps = 39/246 (15%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                  D  ++T     V  +   +    T    + VGP +  E I+   V  I+    
Sbjct: 304 TTTITSPDFTSETANDLAVLIEGGSLPLPVTEVQRQTVGPTLGAEAIQASAVAAILGLAF 363

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             +YI + ++      A   L        G          L  +A  +  IG +++  V+
Sbjct: 364 TTLYITLVYRLV-GFLAALALGFYTLIAYGALVAINATLTLPGLAGFVLAIGMAIDANVL 422

Query: 740 VYDRMRKNMKLYTT----------------------------------SISFRDLIDKSI 765
           +++R R+  +                                        S         
Sbjct: 423 IFERTREEHQRQAKVYEANKSAGLRDATEDEAAKAESGVLTRKRRRAVPPSLEKAFVVGS 482

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +     + T++   I+   +  +    +  F + ++ G       S+F A  I     +
Sbjct: 483 RKAWSAVLDTNITTLIAAALLFFFASGTVQGFGVTLSIG----TLVSMFSALVIARVFVE 538

Query: 826 WRAKNA 831
           W  + A
Sbjct: 539 WAVRRA 544


>gi|253578288|ref|ZP_04855560.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850606|gb|EES78564.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 802

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 203/691 (29%), Positives = 338/691 (48%), Gaps = 12/691 (1%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q       S  +  ++  +++R++Q    E+ + + GS RI +++PG  D   +   
Sbjct: 51  ITYQAKESNPTSEEMSDTIYKLQKRVEQYST-EAQVYQEGSDRITVEIPGVTDADTILND 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVR---------FLRDSDGNQYLVEDKVEISGIHLNG 256
           LG    + F      +  + F  G            +++S        D  +  G  +  
Sbjct: 110 LGKPGSLYFITKEDADGNQNFTTGQDGYVLSRTMDEIKESGSVVLEGSDVADAQGGAIQN 169

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316
              +         +    +  G  +F E T++N+GK +A+V D  +++AP +N+ I  GK
Sbjct: 170 QNTSAKEYVVSLTLTSDGENSGKTKFAEATKNNVGKQIAIVYDNNIISAPNVNEEISGGK 229

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
           AQISG   +E A  LA+ +R GSL ++L  +    V A LG ++I     A   GL++++
Sbjct: 230 AQISGMSDLEEAQNLASYIRIGSLGLELEELRSSVVAAQLGEEAISTSVLAGAIGLIIVI 289

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           +FMI+ Y   G+VA  ++ L   L L  L+    TLTLP IAGI+LGIG+AVD+N+++  
Sbjct: 290 IFMIIAYRVPGVVAGIALILYTSLMLITLNAFDITLTLPGIAGIILGIGMAVDANVIIYA 349

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           RIREE     SV  S+  GFS+A+S IFD NIT LIA  VL + G G V+GFA T+ L I
Sbjct: 350 RIREEIGAGVSVRNSIKSGFSKAFSAIFDGNITTLIAAFVLMWLGSGTVKGFAYTLALGI 409

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +ISMFTA+ + R ++  +                   +      +   A    + +    
Sbjct: 410 VISMFTALVVSRLIVNALYAVGVRDPKFYGSAKERKAVDFLGKKKVFFAISIILILCGPA 469

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
           ++ +        LNY ++F GG    V  N  +D+  + S +  +       +N    K 
Sbjct: 470 AMFANSHAGNKALNYSLEFSGGTSTTVTFNEDMDIKTIDSEVTPVVEEVTGDKNVQPTKV 529

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                      S+ Q+    +    + +     +  +TE +   +S E+ R  IV VI++
Sbjct: 530 VGTNQVVIKTRSLNQSEREALQSALVEKFGVDDSTISTESISSTVSSEMRRDAIVAVIVA 589

Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I ML+YIW RFK   FA  A+  L+ D+   L F+A+  +    T +A +LT++GYS+N
Sbjct: 590 TICMLLYIWFRFKDIRFASSAVLALLHDVLVVLAFYAIARVSVGNTFIACMLTIVGYSIN 649

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V++DR+R+N+   +      ++++ SI +TL RS+YTS   F+ V  + + G S I 
Sbjct: 650 ATIVIFDRIRENLHSGSREK-LAEIVNTSITQTLTRSIYTSFTTFVMVAVLYIMGVSSIR 708

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            FA P+  G++V A SS+ I   +   +   
Sbjct: 709 EFAAPLMVGVLVGAYSSVCITGALWYVMKKK 739



 Score = 96.3 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 93/233 (39%), Gaps = 4/233 (1%)

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           ++   +      +  +          G S  +         +I  +        + +V  
Sbjct: 208 AIVYDNNIISAPNVNEEISGGKAQISGMSDLEEAQNLASYIRIGSLGLELEELRSSVVAA 267

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  E I   ++   I  I ++I++ I ++    + A   LIL  +  L     F I   
Sbjct: 268 QLGEEAISTSVLAGAIGLIIVIIFMIIAYRVP-GVVAGIALILYTSLMLITLNAFDITLT 326

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +A ++  IG +V+  V++Y R+R+ +      +S R+ I    ++        ++  
Sbjct: 327 LPGIAGIILGIGMAVDANVIIYARIREEIGA---GVSVRNSIKSGFSKAFSAIFDGNITT 383

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            I+   +   G   +  FA  +A GIV++  +++ ++  I+  +Y    ++ +
Sbjct: 384 LIAAFVLMWLGSGTVKGFAYTLALGIVISMFTALVVSRLIVNALYAVGVRDPK 436


>gi|254445447|ref|ZP_05058923.1| protein-export membrane protein SecD, putative [Verrucomicrobiae
           bacterium DG1235]
 gi|198259755|gb|EDY84063.1| protein-export membrane protein SecD, putative [Verrucomicrobiae
           bacterium DG1235]
          Length = 852

 Score =  299 bits (765), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 201/734 (27%), Positives = 351/734 (47%), Gaps = 38/734 (5%)

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+   S L         ++ T +   + L     +   +  +  ++ II +R++  G+SE
Sbjct: 107 LEDSKSNLKKGLDIQGGISVTFEVDPLAL-AEVPEAERNEKLSDAINIIERRVNTYGVSE 165

Query: 179 STIQRLGSHRILIQLPGE--QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
             ++ +G +RI +QL G   +D   L   +   A++ F +V P  S         + + +
Sbjct: 166 PIVRPVGENRIELQLAGVNTKDNPDLIDTIKAPARLEFREVHPTASPLTDPRPTGYEKMT 225

Query: 237 DGN---------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                          V+    ++G ++  A    +       V +     G+  F +VT 
Sbjct: 226 MIQESGGTEREVSLYVKRIPALTGKYVADAFPRTNEMG-GIEVILKLTNDGSDLFADVTA 284

Query: 288 DNIGKPLAV--------VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
               +            VLD ++ +AP + + I  G A I+G +T   A  LA  L    
Sbjct: 285 KLASEGSNTGQLGRLAIVLDKQLQSAPTVRERISGGTASITGRYTQREAIDLANTLN-NP 343

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           L + L +VE   VG  +  DSI  G  A + G+  +  FMI  +   G+VA  S+ LN++
Sbjct: 344 LELPLEVVEMYEVGPSMAKDSIESGVKASLIGISAVAAFMIAYFMIGGVVALASVVLNIV 403

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           + L +L+   ATLTLP IAGIVL +G+AVD+NIL+ ERIREE R  +++  +L+ GF++ 
Sbjct: 404 IVLGVLASFKATLTLPGIAGIVLTVGMAVDANILIFERIREELRSGKNIKSALEGGFNKV 463

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +STIFD+N+T L+ + V+   G G V+GF +T+ + ++ +MF A+ I R ++  +     
Sbjct: 464 FSTIFDANVTTLLVSFVMLGLGTGPVKGFGLTLAIGVMTTMFCALIITRVLLELLFETGA 523

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGG 578
           +K            +     I F++ R      S       + +L +   + YGIDF GG
Sbjct: 524 LKKFTT------LSLLTNSKIDFLKYRKPAFIASWTLVAIGLTVLVSKKDSIYGIDFTGG 577

Query: 579 IQLGVLANRPVDLSVVRSNLESL--QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            ++ +     +D + +R  L +      +  +Q+  G  + L+R+Q       A    L+
Sbjct: 578 DEVVLSFTEKLDEAEIRDALAAAEIGEVNPLYQSQLGTTDELLRIQTGFAKGDAAIEALQ 637

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
                         +     +GP +  E+ +   + + +S   +L+YI  RF+  + +GA
Sbjct: 638 NAF-----PSAEYDVIGKNEIGPSVGAEIQKNAFIAIGLSLGLILLYIAFRFEIGYGVGA 692

Query: 697 ITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           I   I DI  T+G F L  G +F    VAA+L ++GYS+ND +VV+DR+R+ + L  TS 
Sbjct: 693 IVATIHDILLTIGVFVLVPGHQFTAPMVAAILLIVGYSLNDTIVVFDRIREELTLRPTSK 752

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
             R++++ ++N  + RS+ TS    ++ + + V+G  VI   A     GI+    SSIFI
Sbjct: 753 -LREVLNIAMNAVITRSLLTSFTTLLASVSLMVFGKGVINDIAFTFTIGIITGTFSSIFI 811

Query: 816 AAPILLFIYDWRAK 829
           A+P+  F +    +
Sbjct: 812 ASPVFYFWHKGDRR 825



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 91/227 (40%), Gaps = 4/227 (1%)

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           D   Q+    +  +            Q   +++       +     +     VGP ++++
Sbjct: 304 DKQLQSAPTVRERISGGTASITGRYTQREAIDLANTLNNPLELPLEVVEMYEVGPSMAKD 363

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            I  G+   +I   A+  ++   F     + A+ +++L+I   LG  A F     L  +A
Sbjct: 364 SIESGVKASLIGISAVAAFMIAYFMIG-GVVALASVVLNIVIVLGVLASFKATLTLPGIA 422

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++  +G +V+  +++++R+R+ ++   +  + +  ++   N+        ++   +   
Sbjct: 423 GIVLTVGMAVDANILIFERIREELR---SGKNIKSALEGGFNKVFSTIFDANVTTLLVSF 479

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            M   G   +  F + +A G++     ++ I   +L  +++  A   
Sbjct: 480 VMLGLGTGPVKGFGLTLAIGVMTTMFCALIITRVLLELLFETGALKK 526



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 61/437 (13%), Positives = 134/437 (30%), Gaps = 42/437 (9%)

Query: 35  FPSAMPKNRISL--GLDLRGGSHLVLEVD-------EDDFVNGFLQMYSDELRSFLKKEG 85
            P+ +  ++ +L  GLD++GG  +  EVD        +   N  L    + +   +   G
Sbjct: 103 LPTLLEDSKSNLKKGLDIQGGISVTFEVDPLALAEVPEAERNEKLSDAINIIERRVNTYG 162

Query: 86  IGVFSMR-QIQNKITLSFADSRFKE--NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           +    +R   +N+I L  A    K+  ++ D +    +    +++           T  E
Sbjct: 163 VSEPIVRPVGENRIELQLAGVNTKDNPDLIDTIKAPARLEFREVHPTASPLTDPRPTGYE 222

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIR--------QRIDQIGISESTIQRLGSHRILIQLP 194
              ++ ++   +       + +  +          R +++G  E  ++       L    
Sbjct: 223 KMTMIQESGGTEREVSLYVKRIPALTGKYVADAFPRTNEMGGIEVILKLTNDGSDLFADV 282

Query: 195 GEQDPS---------RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
             +  S         RL  +L    + +       +     + G    R++      + +
Sbjct: 283 TAKLASEGSNTGQLGRLAIVLDKQLQSAPTVRERISGGTASITGRYTQREAIDLANTLNN 342

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
            +E+    +                 +    +G                 V L   VL  
Sbjct: 343 PLELPLEVVEMYEVGPSMAKDSIESGVKASLIGISAVAAFMIAYFMIGGVVALASVVLNI 402

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD----LGSDSI 361
            ++   + S KA ++          +   + A  L  +    E R+         G  + 
Sbjct: 403 VIVLGVLASFKATLTLPGIAGIVLTVGMAVDANILIFERIREELRSGKNIKSALEGGFNK 462

Query: 362 YKGTCAIVAGLVLIVLFMIV---------LYGKWGLVADFSIFLNVILTLALLSLLGATL 412
              T        L+V F+++               +    ++F  +I+T  LL LL  T 
Sbjct: 463 VFSTIFDANVTTLLVSFVMLGLGTGPVKGFGLTLAIGVMTTMFCALIITRVLLELLFETG 522

Query: 413 TLPSIAGIVLGIGLAVD 429
            L     + L     +D
Sbjct: 523 ALKKFTTLSLLTNSKID 539


>gi|225548077|ref|ZP_03769362.1| hypothetical protein RUMHYD_00056 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040753|gb|EEG50999.1| hypothetical protein RUMHYD_00056 [Blautia hydrogenotrophica DSM
           10507]
          Length = 752

 Score =  299 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 200/716 (27%), Positives = 345/716 (48%), Gaps = 11/716 (1%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
               +N+           +  +  ++   S  +  ++  ++QR++Q    ES + + GS+
Sbjct: 33  TGAARNINTGLDLAGGVSITYETTVENPSSDDMADTIYKLQQRVEQYST-ESQVYQEGSN 91

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG---VRFLRDSDGNQYLVE 244
           RI +++PG  D + + + LG    + F     +   + + F      ++ + + ++   +
Sbjct: 92  RINVEIPGVTDANSILEELGKPGSLYFIAHKDSEGNENYSFDSSTGGYVLNKELDELQED 151

Query: 245 DKVEISGIHLNGATANFDPKTHKP---VVDISFDEMGARRFFEVTRDNIGKPLAV---VL 298
             + ++G  +  A A       +    VVD++  + GA++F E T+              
Sbjct: 152 GSIVLTGTDVETAKAVIAQDDMQNKENVVDLTLTKAGAKKFAEATKKAYEDNRDSIGIYY 211

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG  ++ P +   I  G AQISG    + A  LA+ +R G L ++L  +    V A LG 
Sbjct: 212 DGEFVSVPNVQAEITGGNAQISGMADAQEAENLASTIRIGGLKLELTELRSNVVAAQLGE 271

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           ++I     A   G+V++++FMI++Y   G+VA  ++ +   + L  L+    TLTLP IA
Sbjct: 272 EAISTSVVAAAIGMVIVMIFMILMYRVPGVVASVALVIYTDVMLITLNAFDITLTLPGIA 331

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GI+LGIG+AVD+N+++  RIREE     SV  S+  GF +A+S IFD NIT LIA+ VL 
Sbjct: 332 GIILGIGMAVDANVIIYARIREEIASGISVRSSIQNGFKKAFSAIFDGNITTLIASFVLM 391

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           + G G V+GFA T+ L I+ISMFTA+ + R ++  +               +  +I    
Sbjct: 392 WLGSGTVKGFAYTLALGIVISMFTALVVSRYIVQALFAVGVRDEKFFGRAKQRKVIDFLG 451

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
             +F       + +     +          LNY ++F GG    V  N  +D+  + S +
Sbjct: 452 KRRFFFVVSICLILCAPIFMVVHHSSEGKALNYSLEFSGGTSTNVTFNEDMDIKTIDSEV 511

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
             L       +N    K            S+       + K  + E     +    E + 
Sbjct: 512 TPLVERVTGDKNVQPTKVVGTNQVIIKTKSLNLDEREALNKALVDEFGVDESKITAESIS 571

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIE 717
             IS E+    I+ VI++ I ML+YIW+RFK   FA  A+  L+ D+   L F+A+  + 
Sbjct: 572 STISSEMRNDAIMAVIVATICMLLYIWLRFKDIRFASSAVLALVHDVLVVLAFYAIARVS 631

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
              T +A +LT++GYS+N  +V++DR+R+NM+        +++++ SI +TL RS+YTS 
Sbjct: 632 VGNTFIACMLTIVGYSINATIVIFDRIRENMRGKKKKEELKEVVNASITQTLTRSIYTSF 691

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             F+ V  + + G S I  FA+P+  GIV  A SS+ I   +   +     K  ++
Sbjct: 692 TTFVMVAVLYIMGVSSIREFALPLIVGIVCGAYSSVCITGALWYVMKTRGMKENKV 747


>gi|224476734|ref|YP_002634340.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus carnosus subsp. carnosus TM300]
 gi|222421341|emb|CAL28155.1| putative protein-export membrane protein SecDF [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 758

 Score =  299 bits (764), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 173/700 (24%), Positives = 322/700 (46%), Gaps = 31/700 (4%)

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
              +++   A++ + + +  R++ +G+SE  IQ   ++RI +QL G ++ +  R +L + 
Sbjct: 52  EKGEKIDDKAVQATAKTLENRVNVLGVSEPKIQVENNNRIRVQLAGVKNQNEARDILSSQ 111

Query: 210 AKMSFHKVLPNNSKKGFM--FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           A ++      +    G     G                            T     +   
Sbjct: 112 ANLTIRDSDDHVKLTGKDLVQGSAKQEFKQNTNQPAVTFKLKDSKKFKKVTEEISKRKDN 171

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
            +V     E G     E  + +     A  +D        IN          +G   ++ 
Sbjct: 172 VMVVWLDYEKGDSYQKEKDKKDPKYVSAASVD------QPINSDSVEISGGFNGEKGVQK 225

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  +A +L +GSLP+ L  +   +VGA  G D++ K     + G+ +I LF++  Y   G
Sbjct: 226 AKQIADLLNSGSLPVHLKELYSNSVGAQFGQDALDKTIFGSLLGVGIIYLFIVGFYRLPG 285

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           ++A  ++   + +TL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  ++
Sbjct: 286 IIAVITLTTYIYITLVAFNFIHGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRT 345

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           +  + +     ++ TI D+N+T ++A  VLFFFG  AV+GFA  + L+IL+S  TA+ + 
Sbjct: 346 LKQAFNKANKSSFITILDANLTTVLAAAVLFFFGESAVKGFATMLLLAILMSFVTAVFLT 405

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISI 554
           R ++  +++    K                                 FM+        S 
Sbjct: 406 RILLSLLVQSNYFKKSFWLFGVSKKDRHDINEGIDVYELKTPYDHWNFMKLAKPLFWFSG 465

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
           +  +  + +LF   LN GIDF  G ++ + A+  +    V + L+ + +      +  G 
Sbjct: 466 IIILAGVVILFIFKLNLGIDFTSGTRVDMKADHKITQQSVTNTLDKVGMK-PDQVSLSGN 524

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            +                +V + + KK               V P I +E+ +  ++ +I
Sbjct: 525 NDSASVQFKHDLSKNEVAKVKDTISKKFGND------PTVNTVSPVIGQEIAKNALLSLI 578

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            ++I M+IYI +RF+W   L +I  L+ D    +  F+LF +E ++T +AAVLT+IGYS+
Sbjct: 579 YASIGMIIYISLRFEWRMGLSSILALLHDAFMIVAVFSLFRLEVDVTFIAAVLTIIGYSI 638

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           ND +V +DR+R+N++             +++ SI +T+ RS+ T +   I V+ + ++G 
Sbjct: 639 NDTIVTFDRVRENLRKIKVITEPEQIDRIVNHSIRQTMTRSINTVLTVVIVVVALLIFGA 698

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           S I +F++ +  G+V    SSIFIA P+   +   + K +
Sbjct: 699 SSIFNFSLALLIGLVSGVFSSIFIAVPLWGMMKKRQLKKS 738



 Score = 67.4 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 56/465 (12%), Positives = 127/465 (27%), Gaps = 26/465 (5%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQN 96
             + LGLDL+GG  ++ +V+     +   +  +Q  +  L + +   G+    ++ +  N
Sbjct: 30  KDVRLGLDLQGGFEVLYQVNPLEKGEKIDDKAVQATAKTLENRVNVLGVSEPKIQVENNN 89

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A  + +    D ++          +   K  L      +  +    + N +Q  
Sbjct: 90  RIRVQLAGVKNQNEARDILSSQANLTIRDSDDHVK--LTGKDLVQGSAKQEFKQNTNQPA 147

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                +  +  ++  ++I   +  +  +           ++   +  + +   +      
Sbjct: 148 VTFKLKDSKKFKKVTEEISKRKDNVMVVWLDYEKGDSYQKEKDKKDPKYVSAASVDQPIN 207

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI---------SGIHLNGATANFDPKTHK 267
                   GF       +       L    + +          G        +       
Sbjct: 208 SDSVEISGGFNGEKGVQKAKQIADLLNSGSLPVHLKELYSNSVGAQFGQDALDKTIFGSL 267

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V I +  +            I     + +             +P   A + G      
Sbjct: 268 LGVGIIYLFIVGFYRLPGIIAVITLTTYIYITLVAFNFIHGVLTLPGLAALVLGVGMAVD 327

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A I+        L I   + +  N        +I       V    ++  F       + 
Sbjct: 328 ANIIMYERIKDELRIGRTLKQAFNKANKSSFITILDANLTTVLAAAVLFFFGESAVKGFA 387

Query: 388 LVADFSIFLNVI----LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +   +I ++ +    LT  LLSLL  +        +               +    +  
Sbjct: 388 TMLLLAILMSFVTAVFLTRILLSLLVQSNYFKKSFWLFGVSKKDRHDINEGIDVYELKTP 447

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
            +   F         A    + S I  L   V+LF F       F
Sbjct: 448 YDHWNF------MKLAKPLFWFSGIIILAGVVILFIFKLNLGIDF 486


>gi|317470623|ref|ZP_07930009.1| SecD/SecF family protein-export membrane protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901914|gb|EFV23842.1| SecD/SecF family protein-export membrane protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 752

 Score =  298 bits (763), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 198/686 (28%), Positives = 331/686 (48%), Gaps = 24/686 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  + +   V    I+ ++  +++R++     ES + R G +RI I++PG  D +++   
Sbjct: 56  ITYEVDGKNVSDKNIDDTVYKLQKRVEGYST-ESEVYRQGKNRINIEIPGVTDANKILDE 114

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    ++F      + K              GN           G +            
Sbjct: 115 LGQPGTLAFMVQDGKSMKTVLT----------GNNVKSAKAQTTEGDN----------GA 154

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
              VV + FD+ G + F + T+ N+GKP+ ++ D ++++AP +   I  G+  I+G  + 
Sbjct: 155 KDYVVALEFDKKGTKAFADATKKNVGKPIYIIYDNQIISAPNVQTVITKGECSITGMESY 214

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA+ +R GSLP+KL  +    V A LG D+I     A   G  L+ + MI LY  
Sbjct: 215 EAAENLASSIRIGSLPVKLKELRSNVVSAKLGVDAIQTSVKAGAIGFALVCILMIALYYL 274

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++A  ++ + V++TL  L+    TLTLP +AGI+LGIG+AVD+N+++  RI+EE    
Sbjct: 275 PGVIACLALAIYVLMTLLALNGFNVTLTLPGLAGIILGIGMAVDANVIIYSRIKEEVAMG 334

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           ++V  ++  GF +A S I D N+T LIA  VL+F G G V+GFA T+G+S+LISMFTA+ 
Sbjct: 335 KNVGTAIKAGFHKAASAIIDGNVTTLIAVAVLWFKGTGTVKGFAQTLGMSVLISMFTALV 394

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           I R ++    ++                       +   A    V +  L  +       
Sbjct: 395 ISRFLVTAAYKFGLRSPKLYGKARALKERDFIGVSRRCMAAALLVIVVGLAFLPINKSKI 454

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              LN+ ++F GG    +  ++ V +              +S       +      Q   
Sbjct: 455 GAPLNFDLEFSGGTSSTITFDKSVKVDDSLEKKVVSAYEKVSKSTSVQGQKVKANNQMVI 514

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                     + ++  + +    +    TE +   IS E+ R  IV V+I++I MLIYI 
Sbjct: 515 KTVELNLSQRKQIESTMKK-DFKAKSVATENISSTISNEMQRDAIVSVVIASICMLIYIA 573

Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           IRFK   F   AI  L+ D+      +++  +    T +A +LT+IGYS+N  +V++DR+
Sbjct: 574 IRFKDVKFGASAIIALLNDVLIVFAAYSIGRLSVGGTFIACMLTIIGYSINSTIVIFDRI 633

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+NM+    +   + +++KSI +TL RS+ TS+  FI V  + + G S I  FA+ +  G
Sbjct: 634 RENMQEADNTQ-LKGIVNKSIIQTLTRSINTSLTTFIMVFVLFIMGVSSIRQFALTLMVG 692

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830
           +V  A SS+ I  P+  F+     K 
Sbjct: 693 VVCGAFSSVCITGPLWYFMKTGFKKQ 718



 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 77/181 (42%), Gaps = 4/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +V  K+  + I+  +    I    + I +   + +   + A   L + +  TL    
Sbjct: 237 RSNVVSAKLGVDAIQTSVKAGAIGFALVCILMIALY-YLPGVIACLALAIYVLMTLLALN 295

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F +   L  +A ++  IG +V+  V++Y R+++ + +     +    I    ++     
Sbjct: 296 GFNVTLTLPGLAGIILGIGMAVDANVIIYSRIKEEVAM---GKNVGTAIKAGFHKAASAI 352

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+V  +   G   +  FA  +   ++++  +++ I+  ++   Y +  ++ +
Sbjct: 353 IDGNVTTLIAVAVLWFKGTGTVKGFAQTLGMSVLISMFTALVISRFLVTAAYKFGLRSPK 412

Query: 833 I 833
           +
Sbjct: 413 L 413



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           +IL + +C  G+ I                      I LGLDL GG  +  EVD  +  +
Sbjct: 15  IILLAALCAFGIFITAKGLGKN-------KIGRAENIELGLDLAGGVSITYEVDGKNVSD 67

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +     +L+  ++         RQ +N+I +          I D++        
Sbjct: 68  KNIDDTVYKLQKRVEGYSTESEVYRQGKNRINIEIPGVTDANKILDELGQPGTLAF 123


>gi|189219947|ref|YP_001940587.1| preprotein translocase subunit SecD [Methylacidiphilum infernorum
           V4]
 gi|189186805|gb|ACD83990.1| Preprotein translocase subunit SecD [Methylacidiphilum infernorum
           V4]
          Length = 765

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 218/733 (29%), Positives = 369/733 (50%), Gaps = 36/733 (4%)

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  V S      K  L +        ++       +  + A++Q++ +IR+RID+ G+SE
Sbjct: 41  INAVFSLFPPAEKIKLGLDLKGGTAFLL---ELQGEPSAGALDQAIGVIRKRIDKFGLSE 97

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQ--LLGTTAKMSFHKVLPNNSK------------- 223
             IQ +G  RI +Q+PG  +  +      L   AK+ F  V P+  K             
Sbjct: 98  PIIQPMGKRRISVQIPGLSESEKAAAKEQLSKVAKLEFRLVHPDTDKLLAAIQSGQEKIP 157

Query: 224 ---KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
              +   F     ++      ++  K E  G            +  +P V I F+E GA+
Sbjct: 158 LGYEILPFSQAESKEGKSESLILVRKREEMGGKYVRRAFRGFDEVGRPTVVIEFNEAGAK 217

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
           RF E+T +NIGK LA+VLDG V +APVI  AI        GN T + A  LA++L    L
Sbjct: 218 RFGEITSNNIGKRLAIVLDGEVKSAPVIQTAIFKNAVISGGNMTPKEAEDLASVL-ENPL 276

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
              + I+EER V   LG DSI  G  A +A    +VLFM+  Y   G+VA  ++ +N++L
Sbjct: 277 ETPVKILEERGVDPSLGKDSIISGINAALAAFASVVLFMVFYYRLAGIVAVVALLVNLLL 336

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
            L LL+    TLTLP IAGI+L IG+AVD+N+L+ ERIR+E     +V  ++ +GF++A+
Sbjct: 337 LLGLLAQFHFTLTLPGIAGIILTIGMAVDANVLIYERIRDELEVGVNVKNAIFIGFNKAF 396

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           S IFDSN++ +I +++L   G G ++GFA+T+ L I+ ++F A+   R +  +++ +  +
Sbjct: 397 SAIFDSNVSLIIPSIILMELGSGPLQGFAVTLVLGIVANLFAALVFSRNLFEWLLSWGML 456

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGI 579
           + + +                F++  +  V  + +     I   F       G+DF GG 
Sbjct: 457 RKLSMMKFLHKP------NFDFIKWSWITVPAAAILLAVGIATFFLRSGELLGVDFSGGD 510

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            L V   + V ++ VR  LE  +I     Q        + +++Y  G+            
Sbjct: 511 SLTVAYKQAVPVAKVRQALEEEKIHPSLLQYSREGNQLVYQVRYGEGEKSVN-------V 563

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K        ++   + VGP +  EL  +  + + +  +A+LIY+ +R++W FAL A   
Sbjct: 564 LKEKFPQAGFSLSRMDSVGPVVGDELKHRAGLALSLGLLAILIYVSLRYEWSFALAAALG 623

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + D+   +G  AL G EF++  + A LT++GYS+N+K+V+ DR+R+ +K    ++SF++
Sbjct: 624 QLHDVLLAIGIMALLGKEFDMYLIGAFLTILGYSINEKIVISDRIRETLKFKGANLSFKE 683

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +I++ IN+TL R++ T     ++ + M + GG VI  FA+ +  G++    SS  I   +
Sbjct: 684 IINEGINKTLARTIMTGGTVVLATISMLILGGFVISVFALAILIGVLAGMFSSHLITPAL 743

Query: 820 LLFIYDWRAKNAR 832
           L + +    K  +
Sbjct: 744 LYWFHGLAEKKRK 756



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 91/745 (12%), Positives = 215/745 (28%), Gaps = 53/745 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W+ +  S    I  + +L                P  +I LGLDL+GG+  +LE+ 
Sbjct: 26  RTKRWVGLACSFFILINAVFSL--------------FPPAEKIKLGLDLKGGTAFLLELQ 71

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFAD--SRFKENIADKVTLF 118
            +    G L      +R  + K G+    ++ +   +I++         K    ++++  
Sbjct: 72  GE-PSAGALDQAIGVIRKRIDKFGLSEPIIQPMGKRRISVQIPGLSESEKAAAKEQLSKV 130

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            +     ++ D  K L    + +E   +  +            +S  +I  R  +     
Sbjct: 131 AKLEFRLVHPDTDKLLAAIQSGQEKIPLGYEILPFSQAESKEGKSESLILVRKRE----- 185

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
             +      R          P+ + +     AK        N  K+  +     ++ +  
Sbjct: 186 -EMGGKYVRRAFRGFDEVGRPTVVIEFNEAGAKRFGEITSNNIGKRLAIVLDGEVKSAPV 244

Query: 239 NQYLVEDKVEISGIHLNGATANF--DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
            Q  +     ISG ++    A        +     +   E             I    A 
Sbjct: 245 IQTAIFKNAVISGGNMTPKEAEDLASVLENPLETPVKILEERGVDPSLGKDSIISGINAA 304

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           +     +   ++     +G   +          +        +L +         +G  +
Sbjct: 305 LAAFASVVLFMVFYYRLAGIVAVVALLVNLLLLLGLLAQFHFTLTLPGIAGIILTIGMAV 364

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            ++ +          + + V   I +       A F   +++I+   +L  LG+      
Sbjct: 365 DANVLIYERIRDELEVGVNVKNAIFIGFNKAFSAIFDSNVSLIIPSIILMELGSGPLQGF 424

Query: 417 IAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSR--------AYSTIFDSN 467
              +VLGI   + + ++ +  + E           S+     +        ++ T+  + 
Sbjct: 425 AVTLVLGIVANLFAALVFSRNLFEWLLSWGMLRKLSMMKFLHKPNFDFIKWSWITVPAAA 484

Query: 468 ITALIATVVLFFF-----GGGAVRGFAITMGL---SILISMFTAISIVRAMMIFIIRYKK 519
           I   +     F       G     G ++T+       +  +  A+   +     +   ++
Sbjct: 485 ILLAVGIATFFLRSGELLGVDFSGGDSLTVAYKQAVPVAKVRQALEEEKIHPSLLQYSRE 544

Query: 520 MKSI------DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
              +           S   L        F  +R   VG  +   +     L        I
Sbjct: 545 GNQLVYQVRYGEGEKSVNVLKEKFPQAGFSLSRMDSVGPVVGDELKHRAGLALSLGLLAI 604

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                ++          L  +   L ++ I  +  + F         L         +  
Sbjct: 605 LIYVSLRYEWSFALAAALGQLHDVLLAIGIMALLGKEF-DMYLIGAFLTILGYSINEKIV 663

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI---YIWIRFKW 690
           + + +++ +       + +     G   +          V+++ I+MLI   ++   F  
Sbjct: 664 ISDRIRETLKFKGANLSFKEIINEGINKTLARTIMTGGTVVLATISMLILGGFVISVFAL 723

Query: 691 YFALGAITTLILDITKTLGFFALFG 715
              +G +  +      T      F 
Sbjct: 724 AILIGVLAGMFSSHLITPALLYWFH 748


>gi|255280217|ref|ZP_05344772.1| protein-export translocase protein [Bryantella formatexigens DSM
           14469]
 gi|255269308|gb|EET62513.1| protein-export translocase protein [Bryantella formatexigens DSM
           14469]
          Length = 714

 Score =  297 bits (759), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 205/693 (29%), Positives = 332/693 (47%), Gaps = 25/693 (3%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +SI       +   +  +  ++  ++QR+      E+ + + GS RI I++PG  D 
Sbjct: 46  SGGVSITYRAVGEEAPSAEDMSDTIYKLQQRVASYST-EAQVYQEGSDRINIEIPGVSDA 104

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           + + + LG    ++F              G   L  +D          +  G        
Sbjct: 105 NAILEELGKPGSLTFELSD----------GTVVLEGTDVKTATAGTTPDEMGNS------ 148

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
                  + VV++   + G+ +F E T +NIG  + +V D +V+++PV+  AI  G AQI
Sbjct: 149 -------QNVVELVLTDEGSTKFAEATSENIGNIIYIVYDDQVISSPVVQTAITGGTAQI 201

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +G    E A  LA+ +R GSL I+L  +    VGA LG  +I     A + GL+L++LFM
Sbjct: 202 TGMADHEEAERLASSIRIGSLSIELEELRSNVVGASLGQKAISTSLMAGIIGLILVILFM 261

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
            V+Y   G+VA  S+ +   L L  L+    TLT+  IAGI+L IG+AVD+N+++  RIR
Sbjct: 262 AVVYRVPGIVAGVSLLIYTGLDLLCLNAFDLTLTISGIAGIILSIGMAVDANVIIYARIR 321

Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
           EE     SV  ++  GF +A S I D NIT LIA  VL + G G+++GFA T+ L I++S
Sbjct: 322 EEIAAGASVKTAIKTGFQKALSAILDGNITTLIAAAVLAWKGTGSIQGFAQTLALGIVLS 381

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
           MFTA  + R +M  +               +   I      +        + +S   ++ 
Sbjct: 382 MFTACVVSRLIMNAVYTLGVQDEKYYGRAKQVKPIDFVGKRKIFFVISIVLVLSGPVAML 441

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
                    LNY ++F GG    V  N    +  +   ++ +        N   +K    
Sbjct: 442 IHNGTDGRILNYSLEFMGGTATTVTFNEDYTIEELEEQVQPVIESVTGDANIQMQKVTGG 501

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                    ++     EM +K +++     T+ +TE +   IS E+    +V V+I+ I 
Sbjct: 502 NQVIIKTRELSVDERQEMEEKLVSDFGVDDTLISTESISSTISSEMRSDAVVAVLIATIL 561

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           ML+YIW RFK   FA  A+  L+ D+   L  +A+  I    T +A +LT++GYS+N  +
Sbjct: 562 MLLYIWFRFKDIRFATSAVIALLHDVLVVLACYAIVWISVGNTFIACMLTIVGYSINATI 621

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V++DR+R+N+K      S  D+++ SI +TL RS+YTS+  FI V  + V G S I  FA
Sbjct: 622 VIFDRIRENLKGMKKKDSIADVVNLSITQTLTRSIYTSITTFIMVAMLYVLGVSSIREFA 681

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +P+  GI+    SS+ I  P+   +        
Sbjct: 682 LPLMVGIICGGYSSVCITGPLWYVMKTKIKSKQ 714



 Score =  111 bits (276), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 97/242 (40%), Gaps = 4/242 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S    N+  +   D    +   +           G +  +         +I  +     
Sbjct: 168 TSENIGNIIYIVYDDQVISSPVVQTAITGGTAQITGMADHEEAERLASSIRIGSLSIELE 227

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
              + +VG  + ++ I   ++  II  I +++++ + ++    + A  +L++     L  
Sbjct: 228 ELRSNVVGASLGQKAISTSLMAGIIGLILVILFMAVVYRVP-GIVAGVSLLIYTGLDLLC 286

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              F +   ++ +A ++  IG +V+  V++Y R+R+ +       S +  I     + L 
Sbjct: 287 LNAFDLTLTISGIAGIILSIGMAVDANVIIYARIREEIAA---GASVKTAIKTGFQKALS 343

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  ++   I+   +A  G   I  FA  +A GIV++  ++  ++  I+  +Y    ++
Sbjct: 344 AILDGNITTLIAAAVLAWKGTGSIQGFAQTLALGIVLSMFTACVVSRLIMNAVYTLGVQD 403

Query: 831 AR 832
            +
Sbjct: 404 EK 405



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/207 (10%), Positives = 52/207 (25%), Gaps = 14/207 (6%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF-VNGF 69
              +    +++ L       +            I LGLDL GG  +      ++      
Sbjct: 6   SLAVVIGAVVLVLLLGFTTIVGFGPTGTGAARNILLGLDLSGGVSITYRAVGEEAPSAED 65

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +     +L+  +          ++  ++I +          I +++           +  
Sbjct: 66  MSDTIYKLQQRVASYSTEAQVYQEGSDRINIEIPGVSDANAILEELGKPGSLTFELSDGT 125

Query: 130 P-------------KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                              +  ++  + +VL+     +      E    II    D   I
Sbjct: 126 VVLEGTDVKTATAGTTPDEMGNSQNVVELVLTDEGSTKFAEATSENIGNIIYIVYDDQVI 185

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLR 203
           S   +Q   +                R
Sbjct: 186 SSPVVQTAITGGTAQITGMADHEEAER 212


>gi|228475225|ref|ZP_04059951.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus hominis SK119]
 gi|314936250|ref|ZP_07843597.1| protein-export membrane protein SecDF [Staphylococcus hominis
           subsp. hominis C80]
 gi|228270836|gb|EEK12238.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus hominis SK119]
 gi|313654869|gb|EFS18614.1| protein-export membrane protein SecDF [Staphylococcus hominis
           subsp. hominis C80]
          Length = 761

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 172/697 (24%), Positives = 321/697 (46%), Gaps = 24/697 (3%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
              ++   A++ + + +  R++ +G+SE  IQ     RI +QL G ++P   R++L + A
Sbjct: 53  GDGKIDDKALQSTAQTLENRVNVLGVSEPHIQVEDPDRIRVQLAGVKNPDEARKILSSQA 112

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            ++      +    G        +  +  Q   E  V              +  + K   
Sbjct: 113 NLTIRDADDHVKLTGKDIVQGSAK-QEFKQGTNEPAVTFKLKDRAKFKKVTEEISKKQEN 171

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +    +  ++     ++                   IN           G   +E A  
Sbjct: 172 MMVVW-LDYKKGDSYHKELEKPEDKRKYVSAASVDQPINSDSVEISGGFQGQQGVERAKQ 230

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           +A +L AGSLP+ L  +   +VGA  G D++ K   A + G+ +I LFM+  Y   G+VA
Sbjct: 231 IAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASMVGVAIIYLFMVGFYRLPGIVA 290

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ + V LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  
Sbjct: 291 VIALTVYVYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRVGRTLKQ 350

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R +
Sbjct: 351 AYSKANKSSFLTIFDSNLTTVIAAAVLFFFGQSSVKGFATMLLLGILMIFITAVFLSRGL 410

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFS 557
           +  ++     K              D                  F++     +G+SIL  
Sbjct: 411 LSLLVSSNYFKKKYWMFGVNKNNRHDINEGVDVHDLKTAFEKWNFVKLAKPLIGVSILIL 470

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           +  I +L    LN GIDF  G ++ + ++  +  + V   ++ + +     Q    +   
Sbjct: 471 VIGIIILSIFKLNLGIDFSSGTRVDLDSDTKLSQTKVERTIKDVGLTPDQIQINGNDNKQ 530

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                          ++ +++                  V P I +EL +  +  +I +A
Sbjct: 531 ATVQFKNDLSKDETLKLNKVI------NDQYGHKPTVNTVSPMIGQELAKNAMKALIYAA 584

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           I ++IY+ +RF+W   L A+  L+ D+   +  F+L  +E ++T +AA+LT++GYS+ND 
Sbjct: 585 IGIIIYVSLRFEWRMGLSAVLALLHDVFIIVALFSLLRLEVDITFIAAILTIVGYSINDT 644

Query: 738 VVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +V +DR+R+N+             D++++SI +T+ RSV T +   + V+ + ++G S +
Sbjct: 645 IVTFDRVRENLHKIKVITEPHQIDDIVNQSIRQTMTRSVNTVLTVVVVVIAILIFGASSL 704

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +F++ +  G++    SSIFIA P+   +   + K +
Sbjct: 705 FNFSLALLIGLLSGVFSSIFIAVPLWGIMKKHQLKKS 741



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 79/178 (44%), Gaps = 4/178 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             VG +  ++ + K I   ++    + +++   ++    + A+  L + +  TL  F   
Sbjct: 250 NSVGAQFGQDALDKTIFASMVGVAIIYLFMVGFYRLP-GIVAVIALTVYVYLTLVAFNFI 308

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                L  +AA++  +G +V+  +++Y+R++  +++     + +    K+   +      
Sbjct: 309 SGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRV---GRTLKQAYSKANKSSFLTIFD 365

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +++   I+   +  +G S +  FA  +  GI++   +++F++  +L  +        +
Sbjct: 366 SNLTTVIAAAVLFFFGQSSVKGFATMLLLGILMIFITAVFLSRGLLSLLVSSNYFKKK 423



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 50/412 (12%), Positives = 111/412 (26%), Gaps = 29/412 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65
           + + I  + LLI    F  ++++           ++LGLDL+GG  ++ +V         
Sbjct: 7   IIAFILIVALLIVGMGFTYKNVV---------KNVNLGLDLQGGFEVLYQVKPLSGDGKI 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
            +  LQ  +  L + +   G+    ++    ++I +  A  +  +     ++        
Sbjct: 58  DDKALQSTAQTLENRVNVLGVSEPHIQVEDPDRIRVQLAGVKNPDEARKILSSQANLTIR 117

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
             +   K                   N   V     +++    ++  ++I   +  +  +
Sbjct: 118 DADDHVKLTGKDIVQGSAKQEFKQGTNEPAVTFKLKDRAKF--KKVTEEISKKQENMMVV 175

Query: 185 GSHRILIQLPG--EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                         + P   R+ +   +              GF       R     + L
Sbjct: 176 WLDYKKGDSYHKELEKPEDKRKYVSAASVDQPINSDSVEISGGFQGQQGVERAKQIAELL 235

Query: 243 VEDKVEIS---------GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
               + +          G        +         V I +  M            I   
Sbjct: 236 NAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASMVGVAIIYLFMVGFYRLPGIVAVIALT 295

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           + V L             +P   A + G      A I+        L +   + +  +  
Sbjct: 296 VYVYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRVGRTLKQAYSKA 355

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
                 +I+      V      VLF        G      + + +I   A+ 
Sbjct: 356 NKSSFLTIFDSNLTTVIAAA--VLFFFGQSSVKGFATMLLLGILMIFITAVF 405


>gi|167746207|ref|ZP_02418334.1| hypothetical protein ANACAC_00912 [Anaerostipes caccae DSM 14662]
 gi|167654200|gb|EDR98329.1| hypothetical protein ANACAC_00912 [Anaerostipes caccae DSM 14662]
          Length = 753

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 198/686 (28%), Positives = 331/686 (48%), Gaps = 24/686 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  + +   V    I+ ++  +++R++     ES + R G +RI I++PG  D +++   
Sbjct: 56  ITYEVDGKNVSDKNIDDTVYKLQKRVEGYST-ESEVYRQGKNRINIEIPGVTDANKILDE 114

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    ++F      + K              GN           G +            
Sbjct: 115 LGQPGTLAFMVQDGKSMKTVLT----------GNNVKSAKAQTTEGDN----------GA 154

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
              VV + FD+ G + F + T+ N+GKP+ ++ D ++++AP +   I  G+  I+G  + 
Sbjct: 155 KDYVVALEFDKKGTKAFADATKKNVGKPIYIIYDNQIISAPNVQTVITKGECSITGMESY 214

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA+ +R GSLP+KL  +    V A LG D+I     A   G  L+ + MI LY  
Sbjct: 215 EAAENLASSIRIGSLPVKLKELRSNVVSAKLGVDAIQTSVKAGAIGFALVCILMIALYYL 274

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++A  ++ + V++TL  L+    TLTLP +AGI+LGIG+AVD+N+++  RI+EE    
Sbjct: 275 PGVIACLALAIYVLMTLLALNGFNVTLTLPGLAGIILGIGMAVDANVIIYSRIKEEVALG 334

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           ++V  ++  GF +A S I D N+T LIA  VL+F G G V+GFA T+G+S+LISMFTA+ 
Sbjct: 335 KNVGTAIKSGFHKAASAIIDGNVTTLIAVAVLWFKGTGTVKGFAQTLGMSVLISMFTALV 394

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           I R ++    ++                       +   A    V +  L  +       
Sbjct: 395 ISRFLVTAAYKFGLRSPKLYGKARALKERDFIGVSRRCMAAALLVIVVGLAFLPINKSKI 454

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              LN+ ++F GG    +  ++ V +              +S       +      Q   
Sbjct: 455 GAPLNFDLEFSGGTSSTITFDKSVKVDDSLEKKVVSAYEKVSKSTSVQGQKVKANNQMVI 514

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                     + ++  + +    +    TE +   IS E+ R  IV V+I++I MLIYI 
Sbjct: 515 KSVELNLSQRKQIESTMKK-DFKAKSVATENISSTISNEMQRDAIVSVVIASICMLIYIA 573

Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           IRFK   F   AI  L+ D+      +++  +    T +A +LT+IGYS+N  +V++DR+
Sbjct: 574 IRFKDVKFGASAIIALLNDVLIVFAAYSIGRLSVGGTFIACMLTIIGYSINSTIVIFDRI 633

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+NM+    +   + +++KSI +TL RS+ TS+  FI V  + + G S I  FA+ +  G
Sbjct: 634 RENMQEADNTQ-LKGIVNKSIIQTLTRSINTSLTTFIMVFVLFIMGVSSIRQFALTLMVG 692

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830
           +V  A SS+ I  P+  F+     K 
Sbjct: 693 VVCGAFSSVCITGPLWYFMKTGFKKQ 718



 Score =  114 bits (285), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 77/181 (42%), Gaps = 4/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +V  K+  + I+  +    I    + I +   + +   + A   L + +  TL    
Sbjct: 237 RSNVVSAKLGVDAIQTSVKAGAIGFALVCILMIALY-YLPGVIACLALAIYVLMTLLALN 295

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F +   L  +A ++  IG +V+  V++Y R+++ + L     +    I    ++     
Sbjct: 296 GFNVTLTLPGLAGIILGIGMAVDANVIIYSRIKEEVAL---GKNVGTAIKSGFHKAASAI 352

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+V  +   G   +  FA  +   ++++  +++ I+  ++   Y +  ++ +
Sbjct: 353 IDGNVTTLIAVAVLWFKGTGTVKGFAQTLGMSVLISMFTALVISRFLVTAAYKFGLRSPK 412

Query: 833 I 833
           +
Sbjct: 413 L 413



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 7/116 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           +IL + +C  G+ I                      I LGLDL GG  +  EVD  +  +
Sbjct: 15  IILLAALCAFGIFITAKGLGKN-------KIGRAENIELGLDLAGGVSITYEVDGKNVSD 67

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +     +L+  ++         RQ +N+I +          I D++        
Sbjct: 68  KNIDDTVYKLQKRVEGYSTESEVYRQGKNRINIEIPGVTDANKILDELGQPGTLAF 123


>gi|228469988|ref|ZP_04054904.1| putative protein-export membrane protein SecD [Porphyromonas
           uenonis 60-3]
 gi|228308369|gb|EEK17207.1| putative protein-export membrane protein SecD [Porphyromonas
           uenonis 60-3]
          Length = 963

 Score =  297 bits (759), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 194/800 (24%), Positives = 377/800 (47%), Gaps = 39/800 (4%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           +  +    + L++ + + G+   ++++   Q +I +        + + + +         
Sbjct: 162 SSAIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFW 221

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR- 183
           +     +    +      ++ + +  ++    + A E     ++      G  E+ +   
Sbjct: 222 RTYTYDEIASDLNDANDRLTAMANGKDLTPADTTATEADSTAVQ--KPATGGVENVLFSK 279

Query: 184 -----LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD- 237
                 G+     +         + +       +    +L   +            D   
Sbjct: 280 LNITNRGTIVGYARRADLDKIDEMLEQAQKQKMIREDLMLLWGNSPIKDPQTGKETDIYE 339

Query: 238 --GNQYLVEDKVEISGIHLNGATANFDPK--THKPVVDISFDEMGARRFFEVTRDNIGKP 293
               +       ++ G  +  A +        ++PVV ++ ++ GAR++  +T DNIG+ 
Sbjct: 340 LYAIRGNRNALPDLGGEVVTSARSEVRNDLGQNRPVVTMTMNDEGARKWARLTGDNIGRS 399

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +A+VLDG V +AP +N  I  G+++ISG+FT++    LA +L +G +   + I +E  VG
Sbjct: 400 IAIVLDGVVYSAPNVNSEITGGRSEISGHFTVDETTDLANVLNSGRMEASVEIEQESVVG 459

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATL 412
             LGS+SI  G  +    ++L++++M + YG   GL+AD ++ LN   TL +L+   + L
Sbjct: 460 PTLGSESIQAGIISFAIAIILLMIYMCLAYGLIPGLIADGALILNSFFTLGVLASFHSVL 519

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TL  IAG+VL +G+AVD+NIL+ ERI+EE R  +S+  ++  G+  A+S IFDSN+T +I
Sbjct: 520 TLSGIAGLVLTLGMAVDANILIFERIKEELRAGKSMTRAIQDGYGNAFSAIFDSNLTTVI 579

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
              VL+ FG G +RGFA T+ + ++ S  TA+ + R ++  + +  +M  +         
Sbjct: 580 TGGVLYAFGTGPIRGFATTLIIGVIASFITAVFLTRIVVEALDKKGRMDKVTYTTFLTRN 639

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L+ +  + + +  R  G  I     +  +   F  GLN GI+F GG    V   +PV  +
Sbjct: 640 LLNN-PSFKILENRNKGFIIFGSILVLGLIGSFVWGLNRGIEFSGGRNYIVAFEQPVSSA 698

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV-------------- 638
            VR  L       +   +   E N +            ++   E++              
Sbjct: 699 EVREALTKPLEEHVLVTSIGTEGNQVRISTNYGIGMAQESEDEELLVIGKVFEGVQKFLP 758

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
           +    +    + + +++ V P +S+++ R+ I+ VI+S I M +YI +RF+ W F+LGA 
Sbjct: 759 QGTTQQQFVDNYVVSSQRVSPSMSKDISRQAIIAVILSLIFMGLYILLRFRNWAFSLGAF 818

Query: 698 TTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            ++       +  + L      F +E +   +AA+L +IGYS+ND VVV+DR+R+ +  Y
Sbjct: 819 ASVATTTLLIVASYILLWQIMPFTMELDQNFIAALLAIIGYSINDVVVVFDRVRETLHNY 878

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
                 + ++++++N TL R+V TS + F+ V  + + GG+ + SF   +  GIV     
Sbjct: 879 PNREE-KLVMNEALNSTLARTVQTSFSTFLVVFIIFLLGGASMRSFTFALLIGIVYGIFC 937

Query: 812 SIFIAAPILLFIYDWRAKNA 831
           ++F+A+PI   +   + +  
Sbjct: 938 TLFVASPIAYLVRSKQQRKK 957



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/202 (18%), Positives = 79/202 (39%), Gaps = 17/202 (8%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
               +I LGLDL+GG ++VL+V+  D +                       + ++  N  
Sbjct: 60  ARNQQIGLGLDLKGGMNVVLKVNGRDLLRNLSGHNQSPAF-----IEAIDRAAKEGANDF 114

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
             +F           ++           N   +  +   ++++E+   L +         
Sbjct: 115 VGTFV------EAYKELEPSGSLAVIFSNGPLRDVISPKSSDQEVIKELQEKYS-----S 163

Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           AI+ ++ +++ RID+ G+      +  G  RIL++LPG  +P R+R+LL  +A + F + 
Sbjct: 164 AIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFWRT 223

Query: 218 LPNNSKKGFMFGVRFLRDSDGN 239
              +     +        +  N
Sbjct: 224 YTYDEIASDLNDANDRLTAMAN 245


>gi|329937028|ref|ZP_08286657.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           griseoaurantiacus M045]
 gi|329303635|gb|EGG47520.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           griseoaurantiacus M045]
          Length = 773

 Score =  296 bits (758), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 202/709 (28%), Positives = 334/709 (47%), Gaps = 30/709 (4%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +I +    ++  +  + A ++++E++R+R+D +G++E  + R G  RI+++LPG QDP
Sbjct: 43  GTQIVLQTRDSDTAKADAEATDRALEVLRRRVDGLGVAEPNLVRSGEDRIIVELPGVQDP 102

Query: 200 SRLRQLLGTTAKMSFHKV---LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
            R   +LG TA+M+FH V              G R L   DG +  +             
Sbjct: 103 RRAADVLGRTAQMTFHPVLGLADTADTGKGSSGERVLAGEDGQRLRLGPAALTGEHVKGA 162

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV-------------LDGRVL 303
                  +     V + F   G+  + E+T      P                    +V 
Sbjct: 163 EGRIDPQQAVGWFVTVDFGGRGSDLWAELTGRAACNPAGDPARRVAIVLDEEIISSPQVD 222

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
            +      I  G  QI+G F+ E A  LA ++  G+LP+ +  +E+R +G  LG+++I  
Sbjct: 223 PSVSCGTGIAGGSTQITGGFSGEEAKELALLVNGGALPVPVETIEQRTIGPTLGAEAITA 282

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
              A + G  L  LF+IV+Y   G +A  ++    +++ A L  LGATLTLP +AG VL 
Sbjct: 283 SAWAGLIGAALTSLFVIVVYRLLGALATLALACYALVSYAALLALGATLTLPGLAGFVLA 342

Query: 424 IGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           IG+AVD+N+LV ER REE   R+  S   +LD+GF +A+S I DSNIT LIA  +LFF  
Sbjct: 343 IGMAVDANVLVFERAREEYTARRRPSPRTALDVGFRKAFSAIADSNITTLIAAALLFFLA 402

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN----PLSRFFLIPDC 537
            G VRGF +T+ + +L SMF+A+ I R +  F +    +++           R       
Sbjct: 403 SGPVRGFGVTLSIGVLASMFSALVITRVLAGFAVNRPAVRTRPAWSGIDRTGRVRAWLGR 462

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              + MR     + +S +  + +   +   G+  G++F GG  +    +R V     R  
Sbjct: 463 RRPKLMRRPRRWLAVSGVALVLATAGIAGRGVELGVEFTGGRLIEYSTSRTVSADDAREA 522

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L           +                           V++ +  +   +     E++
Sbjct: 523 LTDAGFPRAVVHSSADGD-------LTVRTPDLTDAQEREVRETVGALGGDTEKVRDEMI 575

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  EL  K ++ +  +    L+Y+ +RF+W +A  A+  L  D+   +G FA  G  
Sbjct: 576 GPSLGAELRGKALLALGAALATQLLYLAVRFRWTYAASAVAALAHDVVLLIGAFAWLGKP 635

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            +   +AA+LT+IGYSVND VVV+DR+R+ +        F ++ D +I  TL R+V T +
Sbjct: 636 LDGVFLAALLTVIGYSVNDSVVVFDRVRE-LTAGDRRRPFAEVADAAIVSTLPRTVNTGI 694

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            A   +  + V GG  +  FA+ +  GIVV + SS+F A P+ + +   
Sbjct: 695 GALFILAALFVLGGDTLTDFALALLIGIVVGSYSSVFTATPLAVVLQGR 743



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 59/213 (27%), Gaps = 24/213 (11%)

Query: 43  RISLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKI 98
              LGLDLRGG+ +VL+    D             + LR  +   G+   + +R  +++I
Sbjct: 33  PPRLGLDLRGGTQIVLQTRDSDTAKADAEATDRALEVLRRRVDGLGVAEPNLVRSGEDRI 92

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
            +     +     AD +    Q     +            +  E  +       +     
Sbjct: 93  IVELPGVQDPRRAADVLGRTAQMTFHPVLGLADTADTGKGSSGERVL-----AGEDGQRL 147

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ---------------DPSRLR 203
            +  +           G  +          +     G                 DP+R  
Sbjct: 148 RLGPAALTGEHVKGAEGRIDPQQAVGWFVTVDFGGRGSDLWAELTGRAACNPAGDPARRV 207

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            ++     +S  +V P+ S    + G       
Sbjct: 208 AIVLDEEIISSPQVDPSVSCGTGIAGGSTQITG 240


>gi|82751235|ref|YP_416976.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus RF122]
 gi|82656766|emb|CAI81195.1| protein-export membrane protein [Staphylococcus aureus RF122]
          Length = 759

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G  D +  R++L + A 
Sbjct: 54  GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113

Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++                 G                            T     K    +
Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     + G     E  + N     A  +D        IN           G   ++ A 
Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ LI LFM+  Y   GLV
Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++ 
Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407

Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +                    K  +      +    L        F++     +G+SIL 
Sbjct: 408 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L+   LN GIDF  G ++   + + +    V   ++   +     Q    +  
Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                           ++ + +K K  +            V P I +EL +  ++ +I +
Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND
Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N++     TT+    D++++SI +T+ RS+ T +   + V+ +  +G   
Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F + +  G++    SSIFIA P+   +   + K +
Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGMMKKRQLKKS 739



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             ++LGLDL+GG  ++ +VD     D      LQ  +  L + +   G+    ++  + N
Sbjct: 30  KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    +      ++              K +               +   +Q  
Sbjct: 90  RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                +     ++  ++I      +  +           ++   +  + +   +      
Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267
                   GF       +     + L    + +          G        +       
Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V + +  M            I     + L             +P   A + G      
Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A I+        L I   I +  +        +I+      V    ++  F       + 
Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +    I +  +  + L   L + L   +I      +     +         + +    S
Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 447

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
                      A   I  S +  ++  V+L+ F       F+
Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487


>gi|166031165|ref|ZP_02233994.1| hypothetical protein DORFOR_00851 [Dorea formicigenerans ATCC
           27755]
 gi|166029012|gb|EDR47769.1| hypothetical protein DORFOR_00851 [Dorea formicigenerans ATCC
           27755]
          Length = 747

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 196/698 (28%), Positives = 335/698 (47%), Gaps = 16/698 (2%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   D      +  ++  +++R++Q    E+++ + GS RI I++PG  D + +   
Sbjct: 51  ITYQVKDDNPSDEEMSDTIYKLQKRVEQYST-EASVYQEGSDRINIEIPGVTDANEILDE 109

Query: 206 LGTTAKMSFHKVLPNNSKKG-------FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
           LG    + F     ++                 +  +    +   +  + +SG  +  A 
Sbjct: 110 LGQPGSLYFIAQTGSDGSANYSQVNSTGDASKDYQLNKTIEELQADGSIVLSGNDVKSAQ 169

Query: 259 ANFDPKT----HKPVVDISFDEMGARRFFEVTRDN--IGKPLAVVLDGRVLTAPVINQAI 312
           A           + VV ++F + G  +F + T       + + +  DG  ++ P +  AI
Sbjct: 170 AQTTEDQLTKNKQNVVSLTFTKDGTTKFADATTKALAASQSIGIYYDGAFVSVPNVQAAI 229

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            +G+AQISGN T E A  LA+ +R G L ++L  +    VGA LG  ++     A   GL
Sbjct: 230 TNGQAQISGNMTYEEADALASTIRIGGLKLELEELRSNVVGAQLGEQAVATSLKAGAIGL 289

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
            ++ +FM  +Y   GL +  ++ +   L L +L+    TLTLP IAGI+LGIG+AVD+N+
Sbjct: 290 AIVFVFMCCVYLLPGLASGLALLIYTGLVLIILNAFEVTLTLPGIAGIILGIGMAVDANV 349

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           ++  R+REE  + +SV  SL +GF +A S I D NIT LIA VVL+F G G V+GFA T+
Sbjct: 350 IIFARVREEMVRGRSVKNSLKIGFQKALSAILDGNITTLIAAVVLWFKGSGTVKGFAQTL 409

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
            + I+ SMFTA+ I R ++            +   P      I      +        + 
Sbjct: 410 AIGIIASMFTALVITRLIVNAFYAVGLRSEKLYYRPKKEREPIDFLSKKKVFFTISLVLI 469

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            + L +I +          Y ++F+GG    V  ++   +  +   +  +        N 
Sbjct: 470 AAGLITIGANAGRGKGAFAYSLEFQGGTSTNVTFDKDYSIDEIDKEIVPVVEKVTGDNNV 529

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
             +K            ++   +   + K  +       +    E +   +S E+ R  ++
Sbjct: 530 QTQKVAGTNQVIIKTVTLDLDKREALNKAMVDNFGVDESKITAENISSTVSNEMRRDAVI 589

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            V+I+ I ML+YIW RFK   FA  A+  L+ D+   +GF+A+  I    T +A +LT++
Sbjct: 590 AVVIATICMLLYIWFRFKDIRFATSAVLALLHDVLVVVGFYAIARISVGNTFIACMLTIV 649

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           GYS+N  +V++DR+R+ M+  T S     +++KSI +TL RS+YTS+  FI V  + V G
Sbjct: 650 GYSINATIVIFDRIREEMRGKTKSSDVAAVVNKSITQTLTRSIYTSLTTFIMVAVLYVMG 709

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            S I  FA+P+  G+V  A SS+ I   +   +  ++ 
Sbjct: 710 VSSIKEFALPLMVGVVCGAYSSVCITGALWYVMKRFKK 747



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 88/252 (34%), Gaps = 4/252 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                     ++  S    +          + +           G+   +         +
Sbjct: 194 TTKFADATTKALAASQSIGIYYDGAFVSVPNVQAAITNGQAQISGNMTYEEADALASTIR 253

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           I  +        + +VG ++  + +   +    I    + +++   +     L +   L+
Sbjct: 254 IGGLKLELEELRSNVVGAQLGEQAVATSLKAGAIGLAIVFVFMCCVY-LLPGLASGLALL 312

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           +     L     F +   L  +A ++  IG +V+  V+++ R+R+ M       S ++ +
Sbjct: 313 IYTGLVLIILNAFEVTLTLPGIAGIILGIGMAVDANVIIFARVREEM---VRGRSVKNSL 369

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                + L   +  ++   I+ + +   G   +  FA  +A GI+ +  +++ I   I+ 
Sbjct: 370 KIGFQKALSAILDGNITTLIAAVVLWFKGSGTVKGFAQTLAIGIIASMFTALVITRLIVN 429

Query: 822 FIYDWRAKNARI 833
             Y    ++ ++
Sbjct: 430 AFYAVGLRSEKL 441



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/258 (10%), Positives = 73/258 (28%), Gaps = 13/258 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +     + S+I    L++ L       +            I LGLDL GG  +  +V
Sbjct: 1   MKKSR---GILSLIVAAALIVLL--GFTTIVGFGKGHTGSMKNIKLGLDLAGGVSITYQV 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            +D+  +  +     +L+  +++        ++  ++I +          I D++     
Sbjct: 56  KDDNPSDEEMSDTIYKLQKRVEQYSTEASVYQEGSDRINIEIPGVTDANEILDELGQPGS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                             +     +  + +       +   + ++     +      +S 
Sbjct: 116 LYFI-------AQTGSDGSANYSQVNSTGDASKDYQLNKTIEELQADGSIVLSGNDVKSA 168

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
             +    ++          +  +      A  +   +  + S   +  G      +    
Sbjct: 169 QAQTTEDQLTKNKQNVVSLTFTKDGTTKFADATTKALAASQSIGIYYDGAFVSVPNVQAA 228

Query: 241 YLVEDKVEISGIHLNGAT 258
                + +ISG       
Sbjct: 229 IT-NGQAQISGNMTYEEA 245


>gi|282916905|ref|ZP_06324663.1| secF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus D139]
 gi|283770711|ref|ZP_06343603.1| secF bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus H19]
 gi|282319392|gb|EFB49744.1| secF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus D139]
 gi|283460858|gb|EFC07948.1| secF bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus H19]
 gi|302333310|gb|ADL23503.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 759

 Score =  296 bits (757), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G  D +  R++L + A 
Sbjct: 54  GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113

Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++                 G                            T     K    +
Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     + G     E  + N     A  +D        IN           G   ++ A 
Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ LI LFM+  Y   GLV
Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++ 
Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407

Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +                    K  +      +    L        F++     +G+SIL 
Sbjct: 408 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L+   LN GIDF  G ++   + + +    V   ++   +     Q    +  
Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                           ++ + +K K  +            V P I +EL +  ++ +I +
Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND
Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N++     TT+    D++++SI +T+ RS+ T +   + V+ +  +G   
Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F + +  G++    SSIFIA P+   +   + K +
Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGMMKKRQLKKS 739



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             ++LGLDL+GG  ++ +VD     D      LQ  +  L + +   G+    ++  + N
Sbjct: 30  KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    +      ++              K +               +   +Q  
Sbjct: 90  RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                +     ++  ++I      +  +           ++   +  + +   +      
Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267
                   GF       +     + L    + +          G        +       
Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V + +  M            I     + L             +P   A + G      
Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A I+        L I   I +  +        +I+      V    ++  F       + 
Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +    I +  +  + L   L + L   +I      +     +         + +    S
Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 447

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
                      A   I  S +  ++  V+L+ F       F+
Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487


>gi|298694916|gb|ADI98138.1| protein-export membrane protein [Staphylococcus aureus subsp.
           aureus ED133]
 gi|323440810|gb|EGA98519.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus O11]
 gi|323442841|gb|EGB00466.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus O46]
          Length = 739

 Score =  296 bits (757), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G  D +  R++L + A 
Sbjct: 34  GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 93

Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++                 G                            T     K    +
Sbjct: 94  LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 153

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     + G     E  + N     A  +D        IN           G   ++ A 
Sbjct: 154 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 207

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ LI LFM+  Y   GLV
Sbjct: 208 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 267

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++ 
Sbjct: 268 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 327

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 328 QAFTKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 387

Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +                    K  +      +    L        F++     +G+SIL 
Sbjct: 388 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 447

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L+   LN GIDF  G ++   + + +    V   ++   +     Q    +  
Sbjct: 448 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 507

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                           ++ + +K K  +            V P I +EL +  ++ +I +
Sbjct: 508 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 561

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND
Sbjct: 562 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 621

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N++     TT+    D++++SI +T+ RS+ T +   + V+ +  +G   
Sbjct: 622 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 681

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F + +  G++    SSIFIA P+   +   + K +
Sbjct: 682 IFNFTLALFIGLISGVFSSIFIAVPLWGMMKKRQLKKS 719



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/462 (11%), Positives = 119/462 (25%), Gaps = 18/462 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             ++LGLDL+GG  ++ +VD     D      LQ  +  L + +   G+    ++  + N
Sbjct: 10  KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 69

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    +      ++              K +               +   +Q  
Sbjct: 70  RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 127

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                +     ++  ++I      +  +           ++   +  + +   +      
Sbjct: 128 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 187

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267
                   GF       +     + L    + +          G        +       
Sbjct: 188 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 247

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V + +  M            I     + L             +P   A + G      
Sbjct: 248 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 307

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A I+        L I   I +           +I+      V    ++  F       + 
Sbjct: 308 ANIIMYERIKDELRIGRTIKQAFTKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 367

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +    I +  +  + L   L + L   +I      +     +         + +    S
Sbjct: 368 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 427

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
                      A   I  S +  ++  V+L+ F       F+
Sbjct: 428 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 467


>gi|15924627|ref|NP_372161.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927217|ref|NP_374750.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus N315]
 gi|21283316|ref|NP_646404.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus MW2]
 gi|49486470|ref|YP_043691.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57650518|ref|YP_186531.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus COL]
 gi|148268117|ref|YP_001247060.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus JH9]
 gi|150394185|ref|YP_001316860.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus JH1]
 gi|151221751|ref|YP_001332573.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156979955|ref|YP_001442214.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus Mu3]
 gi|161353523|ref|YP_500252.2| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|161509863|ref|YP_001575522.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|162138566|ref|YP_494288.2| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|221141094|ref|ZP_03565587.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus str. JKD6009]
 gi|253317212|ref|ZP_04840425.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus str. CF-Marseille]
 gi|253732293|ref|ZP_04866458.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733112|ref|ZP_04867277.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|255006422|ref|ZP_05145023.2| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus Mu50-omega]
 gi|257793710|ref|ZP_05642689.1| preprotein translocase, SecDF subunit [Staphylococcus aureus A9781]
 gi|258410991|ref|ZP_05681271.1| preprotein translocase subunit SecD/SecF [Staphylococcus aureus
           A9763]
 gi|258420208|ref|ZP_05683163.1| protein-export membrane protein SecDF [Staphylococcus aureus A9719]
 gi|258424062|ref|ZP_05686944.1| protein-export membrane protein SecDF [Staphylococcus aureus A9635]
 gi|258438210|ref|ZP_05689494.1| translocase subunit secF/protein translocase subunit secD
           [Staphylococcus aureus A9299]
 gi|258443673|ref|ZP_05692012.1| protein-export membrane protein SecDF [Staphylococcus aureus A8115]
 gi|258446880|ref|ZP_05695034.1| translocase subunit secF/protein translocase subunit secD
           [Staphylococcus aureus A6300]
 gi|258448794|ref|ZP_05696906.1| protein-export membrane protein SecDF [Staphylococcus aureus A6224]
 gi|258453750|ref|ZP_05701725.1| protein-export membrane protein SecDF [Staphylococcus aureus A5937]
 gi|262051287|ref|ZP_06023511.1| protein-export membrane protein SecDF [Staphylococcus aureus
           930918-3]
 gi|282893141|ref|ZP_06301375.1| secDF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus A8117]
 gi|282920186|ref|ZP_06327911.1| secDF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus A9765]
 gi|282928272|ref|ZP_06335877.1| secDF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus A10102]
 gi|284024693|ref|ZP_06379091.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus 132]
 gi|294848666|ref|ZP_06789412.1| secDF [Staphylococcus aureus A9754]
 gi|296275922|ref|ZP_06858429.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus MR1]
 gi|300911725|ref|ZP_07129168.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304380766|ref|ZP_07363434.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|13701435|dbj|BAB42729.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus N315]
 gi|14247409|dbj|BAB57799.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|21204756|dbj|BAB95452.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49244913|emb|CAG43374.1| putative protein-export membrane protein [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57284704|gb|AAW36798.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus COL]
 gi|147741186|gb|ABQ49484.1| protein translocase subunit secF / protein translocase subunit secD
           [Staphylococcus aureus subsp. aureus JH9]
 gi|149946637|gb|ABR52573.1| protein-export membrane protein SecD [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150374551|dbj|BAF67811.1| preprotein translocase component SecDF [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|156722090|dbj|BAF78507.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|160368672|gb|ABX29643.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724082|gb|EES92811.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728868|gb|EES97597.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|257787682|gb|EEV26022.1| preprotein translocase, SecDF subunit [Staphylococcus aureus A9781]
 gi|257840141|gb|EEV64605.1| preprotein translocase subunit SecD/SecF [Staphylococcus aureus
           A9763]
 gi|257843919|gb|EEV68313.1| protein-export membrane protein SecDF [Staphylococcus aureus A9719]
 gi|257845683|gb|EEV69715.1| protein-export membrane protein SecDF [Staphylococcus aureus A9635]
 gi|257848254|gb|EEV72245.1| translocase subunit secF/protein translocase subunit secD
           [Staphylococcus aureus A9299]
 gi|257851079|gb|EEV75022.1| protein-export membrane protein SecDF [Staphylococcus aureus A8115]
 gi|257854455|gb|EEV77404.1| translocase subunit secF/protein translocase subunit secD
           [Staphylococcus aureus A6300]
 gi|257858072|gb|EEV80961.1| protein-export membrane protein SecDF [Staphylococcus aureus A6224]
 gi|257864070|gb|EEV86823.1| protein-export membrane protein SecDF [Staphylococcus aureus A5937]
 gi|259160924|gb|EEW45944.1| protein-export membrane protein SecDF [Staphylococcus aureus
           930918-3]
 gi|269941122|emb|CBI49508.1| putative protein-export membrane protein [Staphylococcus aureus
           subsp. aureus TW20]
 gi|282590079|gb|EFB95161.1| secDF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus A10102]
 gi|282594534|gb|EFB99519.1| secDF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus A9765]
 gi|282764459|gb|EFC04585.1| secDF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus A8117]
 gi|285817319|gb|ADC37806.1| Protein-export membrane protein secD / Protein-export membrane
           protein secF [Staphylococcus aureus 04-02981]
 gi|294824692|gb|EFG41115.1| secDF [Staphylococcus aureus A9754]
 gi|300885971|gb|EFK81173.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|304340703|gb|EFM06635.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|312830023|emb|CBX34865.1| protein-export membrane protein SecD [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129922|gb|EFT85912.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198662|gb|EFU28990.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140476|gb|EFW32330.1| protein-export membrane protein SecD [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144015|gb|EFW35784.1| protein-export membrane protein SecD [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|329314311|gb|AEB88724.1| Protein translocase subunit secF / protein translocase subunit secD
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329727045|gb|EGG63501.1| export membrane protein SecD [Staphylococcus aureus subsp. aureus
           21172]
 gi|329728389|gb|EGG64826.1| export membrane protein SecD [Staphylococcus aureus subsp. aureus
           21189]
 gi|329733096|gb|EGG69433.1| export membrane protein SecD [Staphylococcus aureus subsp. aureus
           21193]
          Length = 759

 Score =  296 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G  D +  R++L + A 
Sbjct: 54  GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113

Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++                 G                            T     K    +
Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     + G     E  + N     A  +D        IN           G   ++ A 
Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ LI LFM+  Y   GLV
Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++ 
Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407

Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +                    K  +      +    L        F++     +G+SIL 
Sbjct: 408 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L+   LN GIDF  G ++   + + +    V   ++   +     Q    +  
Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                           ++ + +K K  +            V P I +EL +  ++ +I +
Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND
Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N++     TT+    D++++SI +T+ RS+ T +   + V+ +  +G   
Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F + +  G++    SSIFIA P+   +   + K +
Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             ++LGLDL+GG  ++ +VD     D      LQ  +  L + +   G+    ++  + N
Sbjct: 30  KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    +      ++              K +               +   +Q  
Sbjct: 90  RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                +     ++  ++I      +  +           ++   +  + +   +      
Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267
                   GF       +     + L    + +          G        +       
Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V + +  M            I     + L             +P   A + G      
Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A I+        L I   I +  +        +I+      V    ++  F       + 
Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +    I +  +  + L   L + L   +I      +     +         + +    S
Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 447

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
                      A   I  S +  ++  V+L+ F       F+
Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487


>gi|153816127|ref|ZP_01968795.1| hypothetical protein RUMTOR_02375 [Ruminococcus torques ATCC 27756]
 gi|145846612|gb|EDK23530.1| hypothetical protein RUMTOR_02375 [Ruminococcus torques ATCC 27756]
          Length = 789

 Score =  296 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 200/698 (28%), Positives = 338/698 (48%), Gaps = 14/698 (2%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   D+     ++ ++  +++R++Q    E+   + G +RI I++PG +D + + + 
Sbjct: 51  ITYQVKGDKPSQEDMDDTVYKMQRRVEQYST-EAQAYQEGDNRISIEIPGVEDANAILEE 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVR-FLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           LG    + F K    +  + +  G   ++ +   ++      + ++G  +  ATA     
Sbjct: 110 LGQPGSLYFIKHKDADGNENYTLGAEGYVLNKTIDELKANGSIVLTGSEVKSATAGAWDD 169

Query: 265 THK----PVVDISFDEMGARRFFEVTRD---NIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                    VD++ +  G   F   T +   N    +A+  DG +++ P +N  I +G+A
Sbjct: 170 QKTGKKMYGVDLTLNAEGTDAFAAATTEAYNNGNDTIAIYYDGELISVPSVNAIIENGQA 229

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G+ + E A  +A+ +R G L ++L  +  + VGA LG ++I     A   GL  + L
Sbjct: 230 QITGSASYEEADNIASTIRIGGLNLELEEISSKVVGAQLGEEAISTSLKAGAIGLAAVCL 289

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FMI +Y   G  +  ++ + V L L LL+    TLTLP IAGI+LGIG+AVD+N+++  R
Sbjct: 290 FMIFVYLLPGFASSIALVIYVGLILLLLNAFDITLTLPGIAGIILGIGMAVDANVIIFAR 349

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           ++EE     SV  +L  GF +A S I D NIT LIA  VL+  G G V+GFA T+ L I+
Sbjct: 350 VKEELSAGASVHSALRAGFHKAMSAILDGNITTLIAAAVLWLRGSGPVKGFAQTLALGIV 409

Query: 498 ISMFTAISIVRAMMIFIIRYKKM-KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +SMFTA+ + R ++            +          I      +        + +S   
Sbjct: 410 VSMFTALVVTRLLVYSFYAIGIRNPKVYGRVKEERKPIDFLGKKKVFFVVSIALCLSGFV 469

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +          LNY +DF GG    V  ++   L  V S +          +N    + 
Sbjct: 470 VMGINSARDVGALNYSLDFVGGTATTVTFDKEYTLEEVDSQMVPELEKITGDKNVQ-VQT 528

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                Q             E  +  +     +     TE +   +S E+    ++ VII+
Sbjct: 529 VKGTNQVVFKTQTLDLEKREAFESYMQNEFGVKEEIATENISSTVSSEMRMDAVIAVIIA 588

Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I ML+YIW RFK   FA  A+  L+ D+   L F+A+  +    T +A +LT++GYS+N
Sbjct: 589 TIFMLLYIWFRFKDIRFATSAVVALLHDVLVVLAFYAIARVSVGNTFIACMLTIVGYSIN 648

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V++DR+R+ MK  + +   +DL+++ I +TL RS+YTS+  F+ V  + V G S I 
Sbjct: 649 ATIVIFDRIREEMKNSSRNTDLKDLVNRCITQTLTRSIYTSLTTFVMVAVLYVMGVSSIK 708

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            FA+P+  GIV  A SS+ I   +   +     KNA++
Sbjct: 709 EFALPLMAGIVCGAYSSVCITGALWYVM--KTGKNAKV 744


>gi|269203262|ref|YP_003282531.1| bifunctional preprotein translocase subunit SecD [Staphylococcus
           aureus subsp. aureus ED98]
 gi|87126489|gb|ABD21003.1| protein-export membrane protein SecF [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203006|gb|ABD30816.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|262075552|gb|ACY11525.1| bifunctional preprotein translocase subunit SecD [Staphylococcus
           aureus subsp. aureus ED98]
 gi|302751465|gb|ADL65642.1| RND superfamily resistance-nodulation-cell division protein:proton
           (H+) antiporter [Staphylococcus aureus subsp. aureus
           str. JKD6008]
          Length = 739

 Score =  296 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G  D +  R++L + A 
Sbjct: 34  GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 93

Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++                 G                            T     K    +
Sbjct: 94  LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 153

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     + G     E  + N     A  +D        IN           G   ++ A 
Sbjct: 154 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 207

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ LI LFM+  Y   GLV
Sbjct: 208 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 267

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++ 
Sbjct: 268 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 327

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 328 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 387

Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +                    K  +      +    L        F++     +G+SIL 
Sbjct: 388 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 447

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L+   LN GIDF  G ++   + + +    V   ++   +     Q    +  
Sbjct: 448 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 507

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                           ++ + +K K  +            V P I +EL +  ++ +I +
Sbjct: 508 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 561

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND
Sbjct: 562 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 621

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N++     TT+    D++++SI +T+ RS+ T +   + V+ +  +G   
Sbjct: 622 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 681

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F + +  G++    SSIFIA P+   +   + K +
Sbjct: 682 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 719



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             ++LGLDL+GG  ++ +VD     D      LQ  +  L + +   G+    ++  + N
Sbjct: 10  KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 69

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    +      ++              K +               +   +Q  
Sbjct: 70  RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 127

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                +     ++  ++I      +  +           ++   +  + +   +      
Sbjct: 128 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 187

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267
                   GF       +     + L    + +          G        +       
Sbjct: 188 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 247

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V + +  M            I     + L             +P   A + G      
Sbjct: 248 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 307

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A I+        L I   I +  +        +I+      V    ++  F       + 
Sbjct: 308 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 367

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +    I +  +  + L   L + L   +I      +     +         + +    S
Sbjct: 368 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 427

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
                      A   I  S +  ++  V+L+ F       F+
Sbjct: 428 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 467


>gi|291534324|emb|CBL07436.1| protein translocase subunit secF/protein translocase subunit secD
           [Roseburia intestinalis M50/1]
 gi|291538067|emb|CBL11178.1| protein translocase subunit secF/protein translocase subunit secD
           [Roseburia intestinalis XB6B4]
          Length = 719

 Score =  296 bits (756), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 207/698 (29%), Positives = 328/698 (46%), Gaps = 34/698 (4%)

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
                +  Q   +   +  +  ++  +++R++      S  Q     RI +++PG  D S
Sbjct: 46  SGGVSITYQVMDENPSAEDMSDTIYKLQKRVESYSTEASVYQVG-DDRIAVEIPGVTDAS 104

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           ++ + LG    + F                                V ++G  +  A A 
Sbjct: 105 KILEELGNPGSLEFQLSD--------------------------GTVFMTGDQVADAQAA 138

Query: 261 FDPKTH---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                +   + VV ++  + GA+ F EVT +N+GK L +V DG V++ P + +AI  G A
Sbjct: 139 TTTDQYGNKQYVVQLTLTDEGAKTFGEVTSENVGKALPIVYDGEVISYPTVQEAITGGTA 198

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QISG  T E A  LA  +R GSL ++L+ +E   VGA LGS +I     A   GLV++++
Sbjct: 199 QISGQSTFEEAQTLATQIRIGSLSLQLSELESSVVGAQLGSQAISSSLKAAAIGLVIVMV 258

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FMI++Y   G+ A  ++ +   L +A L L   TLTLP IAGI+L IG+AVD+N+++  R
Sbjct: 259 FMIIVYAVPGVAAALALAIYTALVIATLYLFEITLTLPGIAGIILSIGMAVDANVIIFAR 318

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           IREE    +SV  ++  GF +A S I D NIT LIA +VL   G G V+GFA T+ + I+
Sbjct: 319 IREEIASGKSVITAMKNGFHKAMSAILDGNITTLIAAIVLMGLGSGTVKGFAYTLMIGII 378

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +SMFTA+ + R ++                      I          A    V  +    
Sbjct: 379 LSMFTALVVTRWILYSFYWLGMRDEKFYGRAKERRTINFLQKRYVFFAISIAVIAAGFIG 438

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           +        + LNYG+DF GG        +   +  + +++  +        N    K  
Sbjct: 439 MGVHKASGQNSLNYGLDFMGGTSTTADFGKEYTIEDIENDIIPVVKEVTGDSNIQANKVE 498

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                     ++++    ++  K         +    + +   IS E+    +  VIIS 
Sbjct: 499 GTTQITIKTRTLSKEERDDLNNKLADSFDVDESTITFQSISSTISGEMRADAVKAVIIST 558

Query: 678 IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           I MLIYIW RFK   F   AI  LI D+   L  +AL  I    T +A +LT+IGYSVND
Sbjct: 559 ICMLIYIWFRFKDIRFGASAIIALIHDVLVVLTVYALMRISVGNTFIACMLTIIGYSVND 618

Query: 737 KVVVYDRMRKNM---KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V++DR+R+N+       T     ++ ++S+ +TL RS+ TS+  FI V  + + G + 
Sbjct: 619 TIVIFDRIRENLALKHGKQTREDLMEVANRSLTQTLSRSINTSITTFIMVFMLFLLGVAS 678

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I  FA+P+  G++  A SSI IA  +   +     KN 
Sbjct: 679 IREFALPLMAGMICGAYSSICIATELWYVMKVHLGKNK 716



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 90/242 (37%), Gaps = 4/242 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S        +            ++          G S  +       + +I  +    +
Sbjct: 167 TSENVGKALPIVYDGEVISYPTVQEAITGGTAQISGQSTFEEAQTLATQIRIGSLSLQLS 226

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
              + +VG ++  + I   +    I  + +++++ I +     + A   L +     +  
Sbjct: 227 ELESSVVGAQLGSQAISSSLKAAAIGLVIVMVFMIIVYAVP-GVAAALALAIYTALVIAT 285

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF I   L  +A ++  IG +V+  V+++ R+R+ +    +  S    +    ++ + 
Sbjct: 286 LYLFEITLTLPGIAGIILSIGMAVDANVIIFARIREEIA---SGKSVITAMKNGFHKAMS 342

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  ++   I+ + +   G   +  FA  +  GI+++  +++ +   IL   Y    ++
Sbjct: 343 AILDGNITTLIAAIVLMGLGSGTVKGFAYTLMIGIILSMFTALVVTRWILYSFYWLGMRD 402

Query: 831 AR 832
            +
Sbjct: 403 EK 404



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 60/197 (30%), Gaps = 7/197 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +   VIL +++     L         S++        +  I LGLDL GG  +  +V
Sbjct: 1   MKKSKAAVILVAILAAFAGLA-----YYASIILSSTGIGEEMSIPLGLDLSGGVSITYQV 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            +++     +     +L+  ++         +   ++I +          I +++     
Sbjct: 56  MDENPSAEDMSDTIYKLQKRVESYSTEASVYQVGDDRIAVEIPGVTDASKILEELGNPGS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                   D    +         +   +    ++     +  + E  +   +    +   
Sbjct: 116 LEFQL--SDGTVFMTGDQVADAQAATTTDQYGNKQYVVQLTLTDEGAKTFGEVTSENVGK 173

Query: 181 IQRLGSHRILIQLPGEQ 197
              +     +I  P  Q
Sbjct: 174 ALPIVYDGEVISYPTVQ 190


>gi|237802876|ref|YP_002888070.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis B/Jali20/OT]
 gi|231274110|emb|CAX10904.1| protein translocase (secFG fusion protein) [Chlamydia trachomatis
            B/Jali20/OT]
          Length = 1400

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 165/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%)

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
            +   SDEL + L K G+    M++  + I +S        +     T  +          
Sbjct: 605  IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGVAGISSADILGTSKMSFHVVNEQFS 664

Query: 130  PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186
             +  L          +  +  ++D+    AI +    +           +  +  +   +
Sbjct: 665  SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724

Query: 187  HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                 +       S   Q      +    + +           +      +        +
Sbjct: 725  GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784

Query: 247  VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302
              +    +       D +        ++     +     T++ +                
Sbjct: 785  GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            + +  +        A +SGNF+      LAA L++G++     I+ E  V  +LGS    
Sbjct: 845  VISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQRV 904

Query: 363  KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            +G  ++V GLV++++ M V Y   G++A  ++ LN++L  A +  L A LTL  +AGI+L
Sbjct: 905  QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964

Query: 423  GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             +G+AVD+N+LV ERIREE    +S+  S++ G+ +A+S IFDSN+T ++A+ +L     
Sbjct: 965  AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024

Query: 483  GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
            G ++GFA+T+ + I  SMFTA+ + +   +  ++    K+ +         I        
Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597
               R W V   +L   C           +G+DFKGG  L + ++          SV+R  
Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSHVCEYNPEQMCSVLRKR 1140

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647
             + + +    ++    + +  V++           ++     ++                
Sbjct: 1141 FQQIGLSSRDYRVRRADSSEKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200

Query: 648  ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
                       ++  +   V  ++S ++  + ++ +  +   +L+Y+ +RF+W +A  AI
Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAI 1260

Query: 698  TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              L+ D+  T        F L  I+ +L A+ A++T++GYS+N+ ++++DR+R++ +   
Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
             +     LI+ ++ +TLGR+V T+      ++ +   GG  I +FA  M  GI++   SS
Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379

Query: 813  IFIAAPILLFIYDWRAKNA 831
            ++IA P+LLF+     +N+
Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398


>gi|237804798|ref|YP_002888952.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis B/TZ1A828/OT]
 gi|231273098|emb|CAX10011.1| protein translocase (secFG fusion protein) [Chlamydia trachomatis
            B/TZ1A828/OT]
          Length = 1400

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 165/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%)

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
            +   SDEL + L K G+    M++  + I +S        +     T  +          
Sbjct: 605  IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGVAGISSADILGTSKMSFHVVNEQFS 664

Query: 130  PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186
             +  L          +  +  ++D+    AI +    +           +  +  +   +
Sbjct: 665  SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724

Query: 187  HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                 +       S   Q      +    + +           +      +        +
Sbjct: 725  GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784

Query: 247  VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302
              +    +       D +        ++     +     T++ +                
Sbjct: 785  GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            + +  +        A +SGNF+      LAA L++G++     I+ E  V  +LGS    
Sbjct: 845  VISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQRV 904

Query: 363  KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            +G  ++V GLV++++ M V Y   G++A  ++ LN++L  A +  L A LTL  +AGI+L
Sbjct: 905  QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964

Query: 423  GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             +G+AVD+N+LV ERIREE    +S+  S++ G+ +A+S IFDSN+T ++A+ +L     
Sbjct: 965  AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024

Query: 483  GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
            G ++GFA+T+ + I  SMFTA+ + +   +  ++    K+ +         I        
Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597
               R W V   +L   C           +G+DFKGG  L + ++          SV+R  
Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSHVCEYNPEQMCSVLRKR 1140

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647
             + + +    ++    + +  V++           ++     ++                
Sbjct: 1141 FQQIGLSSRDYRVRRADSSEKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200

Query: 648  ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
                       ++  +   V  ++S ++  + ++ +  +   +L+Y+ +RF+W +A  AI
Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAI 1260

Query: 698  TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              L+ D+  T        F L  I+ +L A+ A++T++GYS+N+ ++++DR+R++ +   
Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
             +     LI+ ++ +TLGR+V T+      ++ +   GG  I +FA  M  GI++   SS
Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379

Query: 813  IFIAAPILLFIYDWRAKNA 831
            ++IA P+LLF+     +N+
Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398


>gi|302555757|ref|ZP_07308099.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           viridochromogenes DSM 40736]
 gi|302473375|gb|EFL36468.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           viridochromogenes DSM 40736]
          Length = 758

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 201/717 (28%), Positives = 334/717 (46%), Gaps = 34/717 (4%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +I +           S A ++++E++R R+D +G++E T+ R GS RI+++LPG QDP
Sbjct: 37  GTQIVLETRPTAPADAGSEATDRTLEVLRGRVDALGVAEPTLARSGSDRIVVELPGVQDP 96

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK------VEISGIH 253
           ++   +LG TA+++FH+VL               R           +        ++G  
Sbjct: 97  AKAADVLGRTAQLTFHQVLGTAGGSDDTAEPLPKRPRQRVLADESGRHLRLGAASLTGKE 156

Query: 254 LNGATANFDPKT---HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
           +  A A FD +     +  VD +                            VL   +I+ 
Sbjct: 157 VEEAAARFDQQGGAGWQVAVDFAGSGRDGWARLTGRAACQPVGDPARRVAIVLDDKIISS 216

Query: 311 AIPSGK-----------AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                             QI+G+F  + A  LA ++  G+LP+ +  VE+R VG  LG++
Sbjct: 217 PQVDPAVGCGSGISGGSTQITGSFGADEARQLALLINGGALPVPVETVEQRTVGPTLGAE 276

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I     A   G  L  LF+IV+Y   G +A  ++    +++ A L+ LGATLTLP +AG
Sbjct: 277 AITASARAAAVGTALTALFIIVVYRLMGALATVALACYGLISYAALAALGATLTLPGLAG 336

Query: 420 IVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            VL +G+AVD+N+LV ER REE   R   S   SL  GF  A S I DSNIT LIA  +L
Sbjct: 337 FVLAVGMAVDANVLVFERAREEYAARLRPSPRSSLTAGFRGALSAIADSNITTLIAAGLL 396

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSRFFL 533
           F    G VRGF +T+G+ +L SM +A+ I R++    +  +++++      I        
Sbjct: 397 FLLASGPVRGFGVTLGIGVLASMLSALVITRSLADLAVSRRRLRARPRLTGIAHTGALRD 456

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 ++ MR     + +S    + +   +   GL++G++F GG  +      PVD   
Sbjct: 457 RLTRAGLRPMRRPRRWLAVSATLLVLAASGIAVRGLDFGVEFTGGRLIEYTTGTPVDPDR 516

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            RS L          Q    +       +               V + +  +   +    
Sbjct: 517 ARSALADAGFPRAVVQASGDD-------RLTVRTDRLTDAQAATVTETVNSLTGHAGKLR 569

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
            E +GP + +EL R  ++ + ++  A L+Y+  RF+W F   A+  L  D+   +G FA 
Sbjct: 570 DETIGPSLGKELRRGALIALAVALGAQLVYLAARFRWLFGTSAVAALAHDVVILVGLFAW 629

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   +   +AA+LT++GYSVND VVV+D   +++        F  + D+++ +TL R+V
Sbjct: 630 LGKPIDGVFLAALLTVVGYSVNDSVVVFD-RLRDLSRRDREAPFAAVADRALLQTLPRTV 688

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            T   A   +  +AV+GG  +  FA+ +  G+VV   SS+F A P+ + ++   A+ 
Sbjct: 689 NTGTGAAFILTALAVFGGDSLTDFAVALLIGLVVGTYSSMFTATPLAVVLHGRPARR 745



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/202 (17%), Positives = 66/202 (32%), Gaps = 22/202 (10%)

Query: 38  AMPKNRISLGLDLRGGSHLVLE---VDEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQ 93
                 + LGLDLRGG+ +VLE       D  +       + LR  +   G+   +  R 
Sbjct: 22  VALTVPVHLGLDLRGGTQIVLETRPTAPADAGSEATDRTLEVLRGRVDALGVAEPTLARS 81

Query: 94  IQNKITLSFADSRFKENIADKVTLFLQGVNSK--------------LNVDPKKNLLVTTT 139
             ++I +     +     AD +    Q    +              L   P++ +L   +
Sbjct: 82  GSDRIVVELPGVQDPAKAADVLGRTAQLTFHQVLGTAGGSDDTAEPLPKRPRQRVLADES 141

Query: 140 EKEISIVLSQNNIDQVISHAI--EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
            + + +  +     +V   A   +Q      Q       S        + R   Q     
Sbjct: 142 GRHLRLGAASLTGKEVEEAAARFDQQGGAGWQVAVDFAGSGRDGWARLTGRAACQP--VG 199

Query: 198 DPSRLRQLLGTTAKMSFHKVLP 219
           DP+R   ++     +S  +V P
Sbjct: 200 DPARRVAIVLDDKIISSPQVDP 221


>gi|283470913|emb|CAQ50124.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus ST398]
          Length = 759

 Score =  295 bits (755), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G  D +  R++L + A 
Sbjct: 54  GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113

Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++                 G                            T     K    +
Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     + G     E  + N     A  +D        IN           G   ++ A 
Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ LI LFM+  Y   GLV
Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++ 
Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407

Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +                    K  +      +    L        F++     +G+SIL 
Sbjct: 408 LLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L+   LN GIDF  G ++   + + +    V   ++   +     Q    +  
Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                           ++ + +K K  +            V P I +EL +  ++ +I +
Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND
Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N++     TT+    D++++SI +T+ RS+ T +   + V+ +  +G   
Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F + +  G++    SSIFIA P+   +   + K +
Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             ++LGLDL+GG  ++ +VD     D      LQ  +  L + +   G+    ++  + N
Sbjct: 30  KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    +      ++              K +               +   +Q  
Sbjct: 90  RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                +     ++  ++I      +  +           ++   +  + +   +      
Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267
                   GF       +     + L    + +          G        +       
Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V + +  M            I     + L             +P   A + G      
Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A I+        L I   I +  +        +I+      V    ++  F       + 
Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +    I +  +  + L   L + L   +I      +     +         + +    S
Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTS 447

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
                      A   I  S +  ++  V+L+ F       F+
Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487


>gi|210616297|ref|ZP_03291025.1| hypothetical protein CLONEX_03246 [Clostridium nexile DSM 1787]
 gi|210149852|gb|EEA80861.1| hypothetical protein CLONEX_03246 [Clostridium nexile DSM 1787]
          Length = 713

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 184/690 (26%), Positives = 324/690 (46%), Gaps = 31/690 (4%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   +      ++ ++  +++R++Q    E+T+ + GS RI I++PG  D + + + 
Sbjct: 51  ITYQVKDENPTEEEMKDTIYKLQKRVEQYST-EATVYQEGSDRINIEIPGVSDANAILEE 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    + F                             E  V + G  +  A+A      
Sbjct: 110 LGKPGSLEFQDA--------------------------EGNVVLEGTDIKTASAKTSQDN 143

Query: 266 H---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               + +V+++  + G  +F E T  NIGK +A+V D  +++ P +N+AI  G+A I G 
Sbjct: 144 MGNKQYIVELNLTDEGKTKFAEATEANIGKQIAIVYDDEIISNPKVNEAITGGQAYIDGM 203

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            + E A  LA+ +R G L ++L  +  + VGA LG ++I     A   GL ++ +FM ++
Sbjct: 204 ESYEEADNLASTIRIGGLKLELEELSSKVVGAQLGEEAISTSLMAGAIGLAIVFIFMCIV 263

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   GL +  ++ +   + + LL+    TLTLP IAGIVL IG+AVD+N+++  R++EE 
Sbjct: 264 YLLPGLASSIALVIYTGIVIVLLNAFNITLTLPGIAGIVLSIGMAVDANVIIFARVKEEM 323

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
              +SV  SL  GF +A S I D N+T LIA +VL+  G G+V+GFA T+ L I++SMFT
Sbjct: 324 AAGKSVKSSLKSGFQKAMSAIVDGNMTTLIAAIVLWVKGTGSVKGFAQTLALGIVVSMFT 383

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A+ + R ++  +                              +    + ++    +    
Sbjct: 384 ALVVTRIIIYSLYAVGLRSPKLYGSQKPRKERDFLKRRVLSFSISLVIIVAGFAMMGVNS 443

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                   Y ++F GG    V  ++   +  + S +  +       +N   +K       
Sbjct: 444 ANGKGAFKYSLEFMGGTSSTVTFDKDYSIEEIDSKIVPVVEKVTGDKNVQFQKVKDSNAV 503

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                S+         K         ++    E +   +S E+    +V ++I+ + ML+
Sbjct: 504 VIKTISLDLEAREAFNKAMADNFGVDASTITAENISSTVSSEMRTDAVVALVIATVCMLL 563

Query: 683 YIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           YIW RFK   F   A+  L+ D+   + F+A+       T +A +LT++GYS+N  +V++
Sbjct: 564 YIWFRFKDIRFGTSAVIALLNDVLFVIAFYAISRTSVGNTFIACILTIVGYSINATIVIF 623

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           DR+R+ +K    +     L+++ I +TL RS+YT+   FI +  + V G S I  FA+P+
Sbjct: 624 DRIREELKTKKKNEELSGLVNRCITDTLTRSIYTNATTFIMLAVLYVLGVSSIKEFAMPL 683

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G++    SSI I  P+   +    AK  
Sbjct: 684 MVGVLGGTFSSICITGPLWYVMKTRFAKKK 713



 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 93/243 (38%), Gaps = 4/243 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                    ++   D    N    +       Y  G    +         +I  +     
Sbjct: 167 TEANIGKQIAIVYDDEIISNPKVNEAITGGQAYIDGMESYEEADNLASTIRIGGLKLELE 226

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
             ++++VG ++  E I   ++   I    + I++ I +     L +   L++     +  
Sbjct: 227 ELSSKVVGAQLGEEAISTSLMAGAIGLAIVFIFMCIVY-LLPGLASSIALVIYTGIVIVL 285

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              F I   L  +A ++  IG +V+  V+++ R+++ M       S +  +     + + 
Sbjct: 286 LNAFNITLTLPGIAGIVLSIGMAVDANVIIFARVKEEMAA---GKSVKSSLKSGFQKAMS 342

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             V  +M   I+ + + V G   +  FA  +A GIVV+  +++ +   I+  +Y    ++
Sbjct: 343 AIVDGNMTTLIAAIVLWVKGTGSVKGFAQTLALGIVVSMFTALVVTRIIIYSLYAVGLRS 402

Query: 831 ARI 833
            ++
Sbjct: 403 PKL 405



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 46/142 (32%), Gaps = 5/142 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +  ++ L   +  I LL          +      A     I LGLDL GG  +  +V
Sbjct: 1   MKKSRGVINLILTVVVICLL-----GFTSVVGFGATGAGAAKNIKLGLDLAGGVSITYQV 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            +++     ++    +L+  +++        ++  ++I +          I +++     
Sbjct: 56  KDENPTEEEMKDTIYKLQKRVEQYSTEATVYQEGSDRINIEIPGVSDANAILEELGKPGS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKE 142
                   +         T   
Sbjct: 116 LEFQDAEGNVVLEGTDIKTASA 137


>gi|258450537|ref|ZP_05698599.1| translocase subunit secF/protein translocase subunit secD
           [Staphylococcus aureus A5948]
 gi|257861695|gb|EEV84494.1| translocase subunit secF/protein translocase subunit secD
           [Staphylococcus aureus A5948]
          Length = 759

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G  D +  R++L + A 
Sbjct: 54  GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113

Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++                 G                            T     K    +
Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     + G     E  + N     A  +D        IN           G   ++ A 
Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ LI LFM+  Y   GLV
Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++ 
Sbjct: 288 AIIALTTYIYLTLVAFNFISGILTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407

Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +                    K  +      +    L        F++     +G+SIL 
Sbjct: 408 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L+   LN GIDF  G ++   + + +    V   ++   +     Q    +  
Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                           ++ + +K K  +            V P I +EL +  ++ +I +
Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND
Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N++     TT+    D++++SI +T+ RS+ T +   + V+ +  +G   
Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F + +  G++    SSIFIA P+   +   + K +
Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             ++LGLDL+GG  ++ +VD     D      LQ  +  L + +   G+    ++  + N
Sbjct: 30  KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    +      ++              K +               +   +Q  
Sbjct: 90  RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                +     ++  ++I      +  +           ++   +  + +   +      
Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267
                   GF       +     + L    + +          G        +       
Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V + +  M            I     + L             +P   A + G      
Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGILTLPGLAALVLGVGMAVD 327

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A I+        L I   I +  +        +I+      V    ++  F       + 
Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +    I +  +  + L   L + L   +I      +     +         + +    S
Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 447

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
                      A   I  S +  ++  V+L+ F       F+
Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487


>gi|297623574|ref|YP_003705008.1| protein-export membrane protein SecD [Truepera radiovictrix DSM
           17093]
 gi|297164754|gb|ADI14465.1| protein-export membrane protein SecD [Truepera radiovictrix DSM
           17093]
          Length = 740

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 197/701 (28%), Positives = 345/701 (49%), Gaps = 39/701 (5%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE--QDPSRLR 203
           V+ Q+         ++ +  +I  R+++ G++E  +Q  G  RI+++LPG    +  R +
Sbjct: 46  VVLQSTTPNPAPEDLQAARRVIENRVNEFGVAEPLVQTAGGDRIIVELPGLSADEQDRAQ 105

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            L+G  A + F  V P +             +       +    +     L         
Sbjct: 106 DLIGQQAVLEFRLVRPQSVGMPVEAMTEADLEPPAFTGEILSGAQTGYDELG-------- 157

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +PVV+       A+ F + T  N+G+ +A+VLDG V++AP INQ       QISG F
Sbjct: 158 ---RPVVNFQVRGADAQAFGQFTGANVGRSMAIVLDGNVVSAPTINQ-RIDASGQISGRF 213

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T+E A  LA +LR+GSLPI L + E R +G  LG+DS+  GT A + G V +V+ +++ Y
Sbjct: 214 TLEEASDLALVLRSGSLPIALQVQEIRAIGPTLGADSVAAGTRAGLIGAVAVVVTVLLFY 273

Query: 384 GK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           G  +G V    +   ++L   +L+ LGA LTLP +AG+VL IG AVD N++  ERI+EE 
Sbjct: 274 GPLFGSVLTVGVLFALVLIFGMLAGLGAALTLPGLAGLVLTIGAAVDGNVISFERIKEEL 333

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R  +S+  ++  GF+ + S I D+N+T LIA   L+ +  G VRGFAIT+ + I+ ++F 
Sbjct: 334 RAGKSLRLAMRSGFANSLSAIIDANVTTLIAAAALYQYTTGPVRGFAITLAIGIVAAVFV 393

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
              +V  ++  +               R         I F++       +S + +  ++ 
Sbjct: 394 NTVVVPFLLDVLTL--------RFRRPRLPRGFYVTGIDFLKRAPLVTTLSGVLAAGALL 445

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            + T GLN   DF GG    +       +  VR+ +  +                +    
Sbjct: 446 AVLTVGLNPSTDFTGGTSALLRTAEGTTVEEVRAAISEVAADIPGVDGSTATVQAVQDGT 505

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPL-------------STIQNTEIVGPKISRELIRKG 669
              G   A  ++  +                        + +   ++VGP +  +L +  
Sbjct: 506 LDGGAEQAAGQLYSVRIGLGQGEGDGATAFASDLAAALEAELLQADVVGPAVGADLRQGA 565

Query: 670 IVGVIISAIAMLIYIWIRF--KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
           I+ V+++   +L+Y+  RF   W  A+ ++     D+   +GF AL G EF++  +AA+L
Sbjct: 566 ILAVLLAFGLILVYVGFRFWPNWIVAVASVIASAHDVVIVMGFLALTGAEFSIPVLAALL 625

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            ++GYS+ND +++ DR+R+N++     +S+R++++ S+N+TL R+V TS    + VL + 
Sbjct: 626 FVVGYSLNDSIIIADRIRENLRKG-RGMSYREIVNASVNQTLSRTVLTSGTTLLPVLALL 684

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +GGSV+  F++ +  GI     SSIFI AP++++  + + 
Sbjct: 685 FFGGSVLRDFSLTLLVGIAFGTYSSIFILAPMVVWFKNRQR 725



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 45/154 (29%), Gaps = 14/154 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M    +  IL        +L     +    +            + LGLDL+GG  +VL+ 
Sbjct: 1   MTQRSFTGILVLGALLAAVLYLWQPWNTTGLP----------PLRLGLDLQGGLRVVLQS 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFAD--SRFKENIADKV-T 116
              +     LQ     + + + + G+    ++    ++I +      +  ++   D +  
Sbjct: 51  TTPNPAPEDLQAARRVIENRVNEFGVAEPLVQTAGGDRIIVELPGLSADEQDRAQDLIGQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
             +              +   T         +  
Sbjct: 111 QAVLEFRLVRPQSVGMPVEAMTEADLEPPAFTGE 144


>gi|166154662|ref|YP_001654780.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis 434/Bu]
 gi|301335931|ref|ZP_07224175.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis L2tet1]
 gi|165930650|emb|CAP04147.1| protein translocase (secFG fusion protein) [Chlamydia trachomatis
            434/Bu]
          Length = 1400

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 164/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%)

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
            +   SDEL + L K G+    M++  + I +S   +    +     T  +          
Sbjct: 605  IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGAAGISSADILGTSKMSFHVVNEQFS 664

Query: 130  PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186
             +  L          +  +  ++D+    AI +    +           +  +  +   +
Sbjct: 665  SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724

Query: 187  HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                 +       S   Q      +    + +           +      +        +
Sbjct: 725  GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784

Query: 247  VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302
              +    +       D +        ++     +     T++ +                
Sbjct: 785  GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            + +  +        A +SGNF+      LA  L++G++     I+ E  V  +LGS    
Sbjct: 845  VISDPVLNVPLKDHASVSGNFSYREVHRLATDLKSGAMSFIPEILSEEVVSPELGSSQRV 904

Query: 363  KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            +G  ++V GLV++++ M V Y   G++A  ++ LN++L  A +  L A LTL  +AGI+L
Sbjct: 905  QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964

Query: 423  GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             +G+AVD+N+LV ERIREE    +S+  S++ G+ +A+S IFDSN+T ++A+ +L     
Sbjct: 965  AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024

Query: 483  GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
            G ++GFA+T+ + I  SMFTA+ + +   +  ++    K+ +         I        
Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597
               R W V   +L   C           +G+DFKGG  L + ++          SV+R  
Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSDVCEYNPEQMCSVLRKR 1140

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647
             + + +    ++    + +  V++           ++     ++                
Sbjct: 1141 FQQIGLSSRDYRVRRADSSGKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200

Query: 648  ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
                       ++  +   V  ++S ++  + ++ +  +   +L+Y+ +RF+W +A  AI
Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAI 1260

Query: 698  TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              L+ D+  T        F L  I+ +L A+ A++T++GYS+N+ ++++DR+R++ +   
Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
             +     LI+ ++ +TLGR+V T+      ++ +   GG  I +FA  M  GI++   SS
Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379

Query: 813  IFIAAPILLFIYDWRAKNA 831
            ++IA P+LLF+     +N+
Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398


>gi|295406758|ref|ZP_06816563.1| secDF [Staphylococcus aureus A8819]
 gi|297245659|ref|ZP_06929524.1| secDF [Staphylococcus aureus A8796]
 gi|294968505|gb|EFG44529.1| secDF [Staphylococcus aureus A8819]
 gi|297177310|gb|EFH36562.1| secDF [Staphylococcus aureus A8796]
          Length = 759

 Score =  295 bits (754), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G  D +  R++L + A 
Sbjct: 54  GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113

Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++                 G                            T     K    +
Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     + G     E  + N     A  +D        IN           G   ++ A 
Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ LI LFM+  Y   GLV
Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVELIYLFMLGFYRLPGLV 287

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++ 
Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407

Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +                    K  +      +    L        F++     +G+SIL 
Sbjct: 408 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L+   LN GIDF  G ++   + + +    V   ++   +     Q    +  
Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 527

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                           ++ + +K K  +            V P I +EL +  ++ +I +
Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND
Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N++     TT+    D++++SI +T+ RS+ T +   + V+ +  +G   
Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F + +  G++    SSIFIA P+   +   + K +
Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/462 (11%), Positives = 121/462 (26%), Gaps = 18/462 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             ++LGLDL+GG  ++ +VD     D      LQ  +  L + +   G+    ++  + N
Sbjct: 30  KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    +      ++              K +               +   +Q  
Sbjct: 90  RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                +     ++  ++I      +  +           ++   +  + +   +      
Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267
                   GF       +     + L    + +          G        +       
Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V++ +  M            I     + L             +P   A + G      
Sbjct: 268 IGVELIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A I+        L I   I +  +        +I+      V    ++  F       + 
Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +    I +  +  + L   L + L   +I      +     +         + +    S
Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTS 447

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
                      A   I  S +  ++  V+L+ F       F+
Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487


>gi|240144501|ref|ZP_04743102.1| protein-export membrane protein SecD [Roseburia intestinalis L1-82]
 gi|257203488|gb|EEV01773.1| protein-export membrane protein SecD [Roseburia intestinalis L1-82]
          Length = 719

 Score =  295 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 207/698 (29%), Positives = 326/698 (46%), Gaps = 34/698 (4%)

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
                +  Q   +   +  +  ++  +++R++      S  Q     RI +++PG  D S
Sbjct: 46  SGGVSITYQVMDENPSAEDMSDTIYKLQKRVESYSTEASVYQVG-DDRIAVEIPGVTDAS 104

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           ++ + LG    + F                                V ++G  +  A A 
Sbjct: 105 KILEELGNPGSLEFQLSD--------------------------GTVFMTGDQVADAQAA 138

Query: 261 FDPKTH---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                +   + VV ++  + GA+ F EVT +N+GK L +V DG V++ P + +AI  G A
Sbjct: 139 TTTDQYGNKQYVVQLTLTDEGAKTFGEVTSENVGKALPIVYDGEVISYPTVQEAITGGTA 198

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QISG  T E A  LA  +R GSL ++L+ +E   VGA LGS +I     A   GLV++++
Sbjct: 199 QISGQSTFEEAQTLATQIRIGSLSLQLSELESSVVGAQLGSQAISSSLKAAAIGLVIVMV 258

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FMI++Y   G+ A  ++ +   L +A L L   TLTLP IAGI+L IG+AVD+N+++  R
Sbjct: 259 FMIIVYAVPGVAAALALAIYTALVIATLYLFEITLTLPGIAGIILSIGMAVDANVIIFAR 318

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           IREE    +SV  ++  GF +A S I D NIT LIA +VL   G G V+GFA T+ + I+
Sbjct: 319 IREEIASGKSVITAMKNGFHKAMSAILDGNITTLIAAIVLMGLGSGTVKGFAYTLMIGII 378

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +SMFTA+ + R ++                      I          A    V  +    
Sbjct: 379 LSMFTALVVTRWILYSFYWLGLRDEKFYGRAKERKTINFLQKRYVFFAISIAVIAAGFIG 438

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           +        + LNYG+DF GG            +  + + +  +        N    K  
Sbjct: 439 MGVHKASGQNSLNYGLDFMGGTSTTADFGEEYTIEDIENKIIPVVKEVTGDSNIQANKVE 498

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                     ++++    ++  K         +    + +   IS E+    +  VIIS 
Sbjct: 499 GTTQITIKTRTLSKEERDDLNNKLADSFDVDESTITFQSISSTISGEMRADAVKAVIIST 558

Query: 678 IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           I MLIYIW RFK   F   AI  LI D+   L  +AL  I    T +A +LT+IGYSVND
Sbjct: 559 ICMLIYIWFRFKDIRFGASAIIALIHDVLVVLTVYALMRISVGNTFIACMLTIIGYSVND 618

Query: 737 KVVVYDRMRKNM---KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V++DR+R+N+       T     ++ ++S+ +TL RS+ TS+  FI V  + + G + 
Sbjct: 619 TIVIFDRIRENLALKHGKQTREDLMEVANRSLTQTLSRSINTSITTFIMVFMLFLLGVAS 678

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I  FA+P+  G++  A SSI IA  +   +     KN 
Sbjct: 679 IREFALPLMAGMICGAYSSICIATELWYVMKVHLGKNK 716



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 90/242 (37%), Gaps = 4/242 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S        +            ++          G S  +       + +I  +    +
Sbjct: 167 TSENVGKALPIVYDGEVISYPTVQEAITGGTAQISGQSTFEEAQTLATQIRIGSLSLQLS 226

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
              + +VG ++  + I   +    I  + +++++ I +     + A   L +     +  
Sbjct: 227 ELESSVVGAQLGSQAISSSLKAAAIGLVIVMVFMIIVYAVP-GVAAALALAIYTALVIAT 285

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF I   L  +A ++  IG +V+  V+++ R+R+ +    +  S    +    ++ + 
Sbjct: 286 LYLFEITLTLPGIAGIILSIGMAVDANVIIFARIREEIA---SGKSVITAMKNGFHKAMS 342

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  ++   I+ + +   G   +  FA  +  GI+++  +++ +   IL   Y    ++
Sbjct: 343 AILDGNITTLIAAIVLMGLGSGTVKGFAYTLMIGIILSMFTALVVTRWILYSFYWLGLRD 402

Query: 831 AR 832
            +
Sbjct: 403 EK 404



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 60/197 (30%), Gaps = 7/197 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +   VIL +++     L         S++        +  I LGLDL GG  +  +V
Sbjct: 1   MKKSKAAVILVAILVAFAGLA-----YYASIILSSTGIGEEMSIPLGLDLSGGVSITYQV 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            +++     +     +L+  ++         +   ++I +          I +++     
Sbjct: 56  MDENPSAEDMSDTIYKLQKRVESYSTEASVYQVGDDRIAVEIPGVTDASKILEELGNPGS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                   D    +         +   +    ++     +  + E  +   +    +   
Sbjct: 116 LEFQL--SDGTVFMTGDQVADAQAATTTDQYGNKQYVVQLTLTDEGAKTFGEVTSENVGK 173

Query: 181 IQRLGSHRILIQLPGEQ 197
              +     +I  P  Q
Sbjct: 174 ALPIVYDGEVISYPTVQ 190


>gi|255507037|ref|ZP_05382676.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis D(s)2923]
 gi|289525493|emb|CBJ14970.1| protein translocase (secFG fusion protein) [Chlamydia trachomatis
            Sweden2]
 gi|296435047|gb|ADH17225.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis E/150]
 gi|296438767|gb|ADH20920.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis E/11023]
          Length = 1400

 Score =  295 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 164/799 (20%), Positives = 335/799 (41%), Gaps = 42/799 (5%)

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
            +   SDEL + L K G+    M++  + I +S   +    +     T  +          
Sbjct: 605  IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGAAGISSADILGTSKMSFHVVNEQFS 664

Query: 130  PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186
             +  L          +  +  ++D+    AI +    +           +  +  +   +
Sbjct: 665  SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724

Query: 187  HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                 +       S   Q      +    + +           +      +        +
Sbjct: 725  GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784

Query: 247  VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302
              +    +       D +        ++     +     T++ +                
Sbjct: 785  GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            + +  +        A +SGNF+      LAA L++G++     I+ E  V  +LGS    
Sbjct: 845  VISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQRV 904

Query: 363  KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            +G  ++V GLV++++ M V Y   G++A  ++ LN++L  A +  L A LT+  +AGI+L
Sbjct: 905  QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTISGLAGIIL 964

Query: 423  GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             +G+AVD+N+LV ERIREE    +S+  S++ G+ +A+S IFDSN+T ++A+ +L     
Sbjct: 965  AMGMAVDTNVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024

Query: 483  GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
            G ++GFA+T+ + I  SMFTA+ + +   +  ++    K+ +         I        
Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597
               R W V   +L   C           +G+DFKGG  L + ++          SV+R  
Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSDVCEYNPEQMCSVLRKR 1140

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647
             + + +    ++    + +  V++           ++     ++                
Sbjct: 1141 FQQIGLSSRDYRVRRADSSGKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200

Query: 648  ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
                       ++  +   V  ++S ++  + ++ +  +   +L+Y+ +RF+W +A  AI
Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAI 1260

Query: 698  TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              L+ D+  T        F L  I+ +L A+ A++T++GYS+N+ ++++DR+R++ +   
Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
             +     LI+ ++ +TLGR+V T+      ++ +   GG  I +FA  M  GI++   SS
Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379

Query: 813  IFIAAPILLFIYDWRAKNA 831
            ++IA P+LLF+     +N+
Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398


>gi|49483881|ref|YP_041105.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425761|ref|ZP_05602185.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257428421|ref|ZP_05604819.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257431059|ref|ZP_05607438.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433745|ref|ZP_05610103.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus E1410]
 gi|282904217|ref|ZP_06312105.1| export membrane protein SecDF [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906043|ref|ZP_06313898.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908956|ref|ZP_06316774.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282911273|ref|ZP_06319075.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282919411|ref|ZP_06327146.1| secF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus C427]
 gi|282924735|ref|ZP_06332403.1| secF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus C101]
 gi|283958397|ref|ZP_06375848.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293503515|ref|ZP_06667362.1| secF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510533|ref|ZP_06669239.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus M809]
 gi|293531074|ref|ZP_06671756.1| export membrane protein SecDF [Staphylococcus aureus subsp. aureus
           M1015]
 gi|295428212|ref|ZP_06820844.1| secF [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297590820|ref|ZP_06949458.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus MN8]
 gi|49242010|emb|CAG40708.1| putative protein-export membrane protein [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|257271455|gb|EEV03601.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257275262|gb|EEV06749.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278262|gb|EEV08904.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281838|gb|EEV11975.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus E1410]
 gi|282313570|gb|EFB43965.1| secF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus C101]
 gi|282317221|gb|EFB47595.1| secF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus C427]
 gi|282324968|gb|EFB55278.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282327220|gb|EFB57515.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus WW2703/97]
 gi|282331335|gb|EFB60849.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595835|gb|EFC00799.1| export membrane protein SecDF [Staphylococcus aureus subsp. aureus
           C160]
 gi|283790546|gb|EFC29363.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290920342|gb|EFD97408.1| export membrane protein SecDF [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291095181|gb|EFE25446.1| secF; bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466897|gb|EFF09417.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus M809]
 gi|295128570|gb|EFG58204.1| secF [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297575706|gb|EFH94422.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312437896|gb|ADQ76967.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315195540|gb|EFU25927.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 759

 Score =  295 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 181/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G  D +  R++L + A 
Sbjct: 54  GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113

Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++                 G                            T     K    +
Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     + G     E  + N     A  +D        IN           G   ++ A 
Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ LI LFM+  Y   GLV
Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++ 
Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 347

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407

Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +                    K  +      +    L        F++     +G+SIL 
Sbjct: 408 LLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L+   LN GIDF  G ++   + + +    V   ++   +     Q    +  
Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKGSGLKADQIQINGKDNK 527

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                           ++ + +K K  +            V P I +EL +  ++ +I +
Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND
Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N++     TT+    D++++SI +T+ RS+ T +   + V+ +  +G   
Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F + +  G++    SSIFIA P+   +   + K +
Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             ++LGLDL+GG  ++ +VD     D      LQ  +  L + +   G+    ++  + N
Sbjct: 30  KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    +      ++              K +               +   +Q  
Sbjct: 90  RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                +     ++  ++I      +  +           ++   +  + +   +      
Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267
                   GF       +     + L    + +          G        +       
Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V + +  M            I     + L             +P   A + G      
Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVD 327

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A I+        L I   I +  +        +I+      V    ++  F       + 
Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +    I +  +  + L   L + L   +I      +     +         + +    S
Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTS 447

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
                      A   I  S +  ++  V+L+ F       F+
Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487


>gi|166155537|ref|YP_001653792.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis L2b/UCH-1/proctitis]
 gi|165931525|emb|CAP07101.1| protein translocase (secFG fusion protein) [Chlamydia trachomatis
            L2b/UCH-1/proctitis]
          Length = 1400

 Score =  295 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 164/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%)

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
            +   SDEL + L K G+    M++  + I +S   +    +     T  +          
Sbjct: 605  IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGAAGISSADILGTSKMSFHVVNEQFS 664

Query: 130  PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186
             +  L          +  +  ++D+    AI +    +           +  +  +   +
Sbjct: 665  SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724

Query: 187  HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                 +       S   Q      +    + +           +      +        +
Sbjct: 725  GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784

Query: 247  VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302
              +    +       D +        ++     +     T++ +                
Sbjct: 785  GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            + +  +        A +SGNF+      LA  L++G++     I+ E  V  +LGS    
Sbjct: 845  VISDPVLNVPLKDHASVSGNFSYREVHRLATDLKSGAMSFIPEILSEEVVSPELGSSQRV 904

Query: 363  KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            +G  ++V GLV++++ M V Y   G++A  ++ LN++L  A +  L A LTL  +AGI+L
Sbjct: 905  QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964

Query: 423  GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             +G+AVD+N+LV ERIREE    +S+  S++ G+ +A+S IFDSN+T ++A+ +L     
Sbjct: 965  AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024

Query: 483  GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
            G ++GFA+T+ + I  SMFTA+ + +   +  ++    K+ +         I        
Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597
               R W V   +L   C           +G+DFKGG  L + ++          SV+R  
Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSDVCEYNPEQMCSVLRKR 1140

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647
             + + +    ++    + +  V++           ++     ++                
Sbjct: 1141 FQQIGLSSRDYRVRRADSSGKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200

Query: 648  ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
                       ++  +   V  ++S ++  + ++ +  +   +L+Y+ +RF+W +A  AI
Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSAI 1260

Query: 698  TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              L+ D+  T        F L  I+ +L A+ A++T++GYS+N+ ++++DR+R++ +   
Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
             +     LI+ ++ +TLGR+V T+      ++ +   GG  I +FA  M  GI++   SS
Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379

Query: 813  IFIAAPILLFIYDWRAKNA 831
            ++IA P+LLF+     +N+
Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398


>gi|257436660|ref|ZP_05612704.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus M876]
 gi|282914442|ref|ZP_06322228.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus M899]
 gi|257284011|gb|EEV14134.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus aureus subsp. aureus M876]
 gi|282321623|gb|EFB51948.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus M899]
          Length = 759

 Score =  295 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 180/698 (25%), Positives = 319/698 (45%), Gaps = 30/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++   A++ + + +  R++ +G+SE  IQ    +RI +QL G  D +  R++L + A 
Sbjct: 54  GDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPNRIRVQLAGVTDQNEARKILSSQAN 113

Query: 212 MSFHKVLPNNS--KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++                 G                            T     K    +
Sbjct: 114 LTIRDAEDKVKLSGSDIKQGSAKQEFKQETNQPTVTFKVKDKNKFKKVTEEISKKRDNVM 173

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     + G     E  + N     A  +D        IN           G   ++ A 
Sbjct: 174 VVWLDFKKGDSYKKEAQKKNPKFISAASVD------QPINSDSVEISGGFKGQEGVKKAK 227

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ LI LFM+  Y   GLV
Sbjct: 228 QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 287

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+A+D+NI++ ERI++E R  +++ 
Sbjct: 288 AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMALDANIIMYERIKDELRIGRTIK 347

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 348 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 407

Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +                    K  +      +    L        F++     +G+SIL 
Sbjct: 408 LLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 467

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L+   LN GIDF  G ++   + + +    V   ++   +     Q    +  
Sbjct: 468 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKGSGLKADQIQINGKDNK 527

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                           ++ + +K K  +            V P I +EL +  ++ +I +
Sbjct: 528 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 581

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND
Sbjct: 582 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 641

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N++     TT+    D++++SI +T+ RS+ T +   + V+ +  +G   
Sbjct: 642 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 701

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F + +  G++    SSIFIA P+   +   + K +
Sbjct: 702 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 739



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 52/462 (11%), Positives = 120/462 (25%), Gaps = 18/462 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             ++LGLDL+GG  ++ +VD     D      LQ  +  L + +   G+    ++  + N
Sbjct: 30  KNVNLGLDLQGGFEVLYQVDPLNKGDKIDKKALQSTAQTLENRVNVLGVSEPKIQVEEPN 89

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +  A    +      ++              K +               +   +Q  
Sbjct: 90  RIRVQLAGVTDQNEARKILSSQANLTIRDAEDKVKLSGSDIKQGSAK--QEFKQETNQPT 147

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                +     ++  ++I      +  +           ++   +  + +   +      
Sbjct: 148 VTFKVKDKNKFKKVTEEISKKRDNVMVVWLDFKKGDSYKKEAQKKNPKFISAASVDQPIN 207

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS---------GIHLNGATANFDPKTHK 267
                   GF       +     + L    + +          G        +       
Sbjct: 208 SDSVEISGGFKGQEGVKKAKQIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASF 267

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V + +  M            I     + L             +P   A + G      
Sbjct: 268 IGVALIYLFMLGFYRLPGLVAIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMALD 327

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A I+        L I   I +  +        +I+      V    ++  F       + 
Sbjct: 328 ANIIMYERIKDELRIGRTIKQAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFA 387

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +    I +  +  + L   L + L   +I      +     +         + +    S
Sbjct: 388 TMLLLGILMIFVTAVFLSRFLLSLLVSSNIFKNQYWLFGVKKNKRHDINEGVDVHDLKTS 447

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
                      A   I  S +  ++  V+L+ F       F+
Sbjct: 448 FEK--WNFVKLAKPLIGVSILIVVVGLVILYIFKLNLGIDFS 487


>gi|194017127|ref|ZP_03055739.1| RND superfamily resistance-nodulation-cell division:proton
           [Bacillus pumilus ATCC 7061]
 gi|194010995|gb|EDW20565.1| RND superfamily resistance-nodulation-cell division:proton
           [Bacillus pumilus ATCC 7061]
          Length = 742

 Score =  295 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 194/697 (27%), Positives = 344/697 (49%), Gaps = 30/697 (4%)

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
           D++ +  +  ++E + +R + +G+SE  I   G++RI +QL G +D +R R++L T A++
Sbjct: 54  DKITNSVLVSTVEALNRRANVLGVSEPNISIEGNNRIRVQLAGVKDQNRAREILSTEAQL 113

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
           SF          G        + +          V++      G             V  
Sbjct: 114 SFRDTNDKELLNGADLVENSAKQTFSQTNEPIVTVKLKDAKKFGDVTR--------KVAA 165

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                    + +  + +  K      + + ++AP +NQ I S   QI G FT++ A  LA
Sbjct: 166 MAPNNQLVIWLDYHKGDSFKKEVSKSNHKYVSAPNVNQEINSSDVQIEGKFTVQEAKDLA 225

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
           ++L AG+LP+KL      +V A  G  ++ +   A + G+  I LFM++ Y   GL+A  
Sbjct: 226 SILNAGALPVKLTEKYSTSVSAQFGEQALDETVFAGIVGIAFIFLFMLLYYRLPGLIAVI 285

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++   + +TL +   +GA +TLP IA ++LG+G+AVD+NI+  ERI+EE +  +SV  + 
Sbjct: 286 TLSAYIYITLQVFDWMGAVMTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAF 345

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
             G  R+++TIFD+N+T++IA  VLFFFG  +V+GFA  + LSIL S  TA+ + R ++ 
Sbjct: 346 RSGNRRSFATIFDANLTSIIAGGVLFFFGTSSVKGFATMLILSILTSFITAVFLSRFLLG 405

Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCI-------------AIQFMRARFWGVGISILFSIC 559
            ++  + +         R   I +                  F+  R   +  S   +I 
Sbjct: 406 LLVESRYLDRRKGWFGVRQKDIMNIHETTETTEPKTPFDKWDFVSKRKGFMIFSATITIA 465

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
            I +L    LN GIDF  G ++ + ++  +    V  + + L +   S      ++N   
Sbjct: 466 GIIVLSIFKLNAGIDFTSGTRIDIQSDHKLSTEQVEQDFKKLDLETDSVVLSGQKENQAA 525

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                  +      V +  K          T  N   V P + +EL R  +  VII++I 
Sbjct: 526 ARFVGVPNKEKIAEVKDYFK------DKYGTEPNVSTVSPTVGKELARNALYAVIIASIG 579

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           +++Y+ +RF++  A+ AI +L+ D    + FF++  +E ++T +AA+LT+IGYS+ND +V
Sbjct: 580 IILYVSVRFEYKMAIAAIISLLYDAFFIVAFFSITRLEVDVTFIAAILTVIGYSINDTIV 639

Query: 740 VYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
            +DR+R+ MK            +++ S+ +T  RSV T +   + V+ + ++G + I +F
Sbjct: 640 TFDRVREQMKKRKPKTIEDLSYIVNLSLQQTFTRSVNTVLTVLVVVIALLIFGSASITNF 699

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833
           +I +  G++    SS++IAA I L        K A+I
Sbjct: 700 SIALLVGLLTGVYSSLYIAAQIWLMWKGREMKKPAKI 736



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 18/133 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+      IL   +  + L+      L + +            ++LGLDL+GG  ++ +V
Sbjct: 1   MKKGR---ILAFFLVVL-LIGTGVGLLTKPVA---------KDMTLGLDLQGGFEVLYDV 47

Query: 61  ----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
                ED   N  L    + L       G+   ++  +  N+I +  A  + +    + +
Sbjct: 48  HPVKKEDKITNSVLVSTVEALNRRANVLGVSEPNISIEGNNRIRVQLAGVKDQNRAREIL 107

Query: 116 TLFLQGVNSKLNV 128
           +   Q      N 
Sbjct: 108 STEAQLSFRDTND 120


>gi|329769770|ref|ZP_08261171.1| hypothetical protein HMPREF0433_00935 [Gemella sanguinis M325]
 gi|328838132|gb|EGF87750.1| hypothetical protein HMPREF0433_00935 [Gemella sanguinis M325]
          Length = 764

 Score =  295 bits (753), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 191/700 (27%), Positives = 330/700 (47%), Gaps = 31/700 (4%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
               +   A++ + + I +RI+ +G+SE  I     +RI ++L G +D    R++L T A
Sbjct: 60  EGQNIDEAAVKATADTISRRINILGVSEPVITVEAGNRIRVELAGVKDQETARKVLSTQA 119

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            ++      N    G                  + K+++      G   +   K      
Sbjct: 120 NLTIRDTDDNILLDGSDLQENGASQGYDQNSKPDVKLKLKDAEKFGKITSDISKKTGGQN 179

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +      +            KP         ++AP +NQ I S   QI+G+F+++ A  
Sbjct: 180 LMVIWMDFSDGDSFKAEAAKEKPK-------YISAPQVNQTINSNDVQITGDFSVKEAKE 232

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           +AA+L +G+LP+KL  +   +VGA  G+D++Y+   A    L +I  FM+++Y   G VA
Sbjct: 233 MAALLNSGALPVKLTEIYSNSVGAQFGADALYQTVLAGAIALGIICAFMLLVYRLPGFVA 292

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
              +   V LT+   +++   LTLP IA ++LG+G+AVD+NI++ ERI+EE R    +  
Sbjct: 293 SVMMVAYVYLTVVFFNMISGVLTLPGIAALILGVGMAVDANIIMYERIKEEVRAGYPLQK 352

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +   G  ++  TIFDS  T +IA VVLF FG  +V+GFA  + LSIL+S  TA+   R +
Sbjct: 353 AYLDGAKQSLWTIFDSQFTTVIAAVVLFIFGTSSVKGFATMLLLSILVSFITAVFGTRLL 412

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFS 557
           +  ++R     +           I D                + F +       +SI   
Sbjct: 413 LGLLVRSNFFNNHPGYFGVSKKSIHDTKFGINSLNLPTKFEWLSFTKHMKKFFALSIAIM 472

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           I     L  + LN GIDF  G ++ + AN  +    V+ ++ SL + +        +K  
Sbjct: 473 IAGSISLGMNKLNLGIDFSSGTRIDIAANTELTTEQVKQDIGSLNVKEEKIVLSQDKKQA 532

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            V  +       +        KK   +           +V P I +EL++  I  ++ ++
Sbjct: 533 TVYSKDSFAQDKSIEIKEYFAKKYEKDAN-------LSVVSPVIGKELVKNAIYALLYAS 585

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           I ++IY+  RF+W   L ++  L+ D+   +   +L  +E ++T +AAVLT++GYS+ND 
Sbjct: 586 IGIIIYVAFRFEWRMGLTSVIALLHDVAVIIFMASLLRLEIDITFIAAVLTIVGYSINDT 645

Query: 738 VVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +V +DR+R++M+      T      ++D S+ +TL RS+ T +   I+V+ M + G S I
Sbjct: 646 IVTFDRIREHMRHEKLIKTKEQIYKIVDVSLRQTLTRSINTVLTVIITVVVMLLVGSSSI 705

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833
            SF + +  G+V    SS+FIAA +   +      K  +I
Sbjct: 706 YSFNVALLIGLVFGLYSSLFIAAQLWAVLKVRELNKKGKI 745



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/414 (8%), Positives = 111/414 (26%), Gaps = 26/414 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +  L  L  ++  +  +                      +++LGLDL+GG  ++ +V+
Sbjct: 10  KFSRILAFLSLVVIVLTSIGLTAQ-------------SNAKKVNLGLDLQGGFEVLYQVE 56

Query: 62  E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI-QNKITLSFADSRFKENIADKVT 116
                 +     ++  +D +   +   G+    +     N+I +  A  + +E     ++
Sbjct: 57  PLREGQNIDEAAVKATADTISRRINILGVSEPVITVEAGNRIRVELAGVKDQETARKVLS 116

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                     + +   +                 N    +   ++ + +  +   D    
Sbjct: 117 TQANLTIRDTDDNILLDGSDLQENGAS--QGYDQNSKPDVKLKLKDAEKFGKITSDISKK 174

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           +      +           + + ++ +    +  +++      +       F V+  ++ 
Sbjct: 175 TGGQNLMVIWMDFSDGDSFKAEAAKEKPKYISAPQVNQTINSNDVQIT-GDFSVKEAKEM 233

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG-----ARRFFEVTRDNIG 291
                     V+++ I+ N   A F        V      +G         + +      
Sbjct: 234 AALLNSGALPVKLTEIYSNSVGAQFGADALYQTVLAGAIALGIICAFMLLVYRLPGFVAS 293

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +   +   V+   +I+  +                     M       ++     ++ 
Sbjct: 294 VMMVAYVYLTVVFFNMISGVLTLPGIAALILGVGMAVDANIIMYERIKEEVRAGYPLQKA 353

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
                               +  +VLF+       G      + + V    A+ 
Sbjct: 354 YLDGAKQSLWTIFDSQFTTVIAAVVLFIFGTSSVKGFATMLLLSILVSFITAVF 407


>gi|197303669|ref|ZP_03168706.1| hypothetical protein RUMLAC_02396 [Ruminococcus lactaris ATCC
           29176]
 gi|197297189|gb|EDY31752.1| hypothetical protein RUMLAC_02396 [Ruminococcus lactaris ATCC
           29176]
          Length = 796

 Score =  294 bits (752), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 193/696 (27%), Positives = 343/696 (49%), Gaps = 21/696 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   D      ++ ++  +++R++Q    E+   ++G +RI I++PG  D + + + 
Sbjct: 51  ITYQVKGDNPSQKDMDDTVYKLQKRVEQYST-EAQAYQVGDNRISIEIPGVNDANAILEE 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGV-RFLRDSDGNQYLVEDKVEISGIHLNG----ATAN 260
           LG    + F K   +  ++ +  G   ++ +   ++    D + ++G  +        ++
Sbjct: 110 LGQPGSLYFIKHKNSAGEENYTLGSSGYVLNKTIDELKESDSIVLTGSEVKTASAGQISD 169

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV---VLDGRVLTAPVINQAIPSGKA 317
               + +  VD+     GA +F E T++ +           DG +++ P +N  I +GKA
Sbjct: 170 STTGSKEYGVDLELTTEGAEKFKEATQEAVNNSNDTIAIYYDGELISVPKVNTVIENGKA 229

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G+ T E A  +A+ +R G L ++L  +    VGA LG +++     A   GL L+ +
Sbjct: 230 QITGSMTYEEADNIASTIRIGGLNVELEELSSEVVGAQLGQEAVSTSLIAGAIGLALVCI 289

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FM  +Y   GL A  ++ L   +TL LL+    TLTLP IAGI+LGIG+AVD+N+++  R
Sbjct: 290 FMCWVYLLPGLAASMALLLYTEITLLLLNAFDITLTLPGIAGIILGIGMAVDANVIIFAR 349

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           ++EE    +SV  +L  GF +A S I D N+T LIA  VL+  G G+V+GFA T+ L I+
Sbjct: 350 VKEELTAGKSVHAALKSGFHKAMSAIIDGNVTTLIAAGVLWLRGSGSVKGFAQTLALGIV 409

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           ISMFTA+ I R ++                  +           F+  +     +SI+  
Sbjct: 410 ISMFTALVITRLIIFSFYGAGIHNVKAYGRHLKERKP-----FDFLGKKKIFFVLSIILC 464

Query: 558 ICSICLLFTHG------LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
           +C   ++  +       +NY +DF GG    V  ++   L  +  N+          +N 
Sbjct: 465 LCGPVMMGVNHARGIGAMNYSLDFVGGTSTNVTFDKEYTLDEIDKNMIPSMEEITGDKNI 524

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
             +             ++  T+   +           +    TE +   +S E+    ++
Sbjct: 525 QVQTVKGTNQVVFKTQTLDLTKREALASYLNENYGVETKDIATENISSTVSSEMRVDAVI 584

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            VII+ I ML+YIW RFK   FA  A+  L+ D+   LGF+ +  +    T +A +LT++
Sbjct: 585 AVIIATICMLLYIWFRFKDIRFATSAVIALVHDVLVVLGFYVIARVSVGNTFIAVMLTIV 644

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           GYS+N  +V++DR+R+ +K  + +   +DL+++ I +TL R++YT++  FI V+ + + G
Sbjct: 645 GYSINGTIVIFDRIREELKTKSKAEDLKDLVNRCITQTLTRTLYTNITTFIMVVVLYILG 704

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            S I  FA P+  GIV  A +S+ I   +   +   
Sbjct: 705 VSSIKEFAAPLMVGIVCGAYTSVCITGALWYVMKTK 740


>gi|241889506|ref|ZP_04776805.1| bifunctional preprotein translocase subunit SecD/SecF [Gemella
           haemolysans ATCC 10379]
 gi|241863813|gb|EER68196.1| bifunctional preprotein translocase subunit SecD/SecF [Gemella
           haemolysans ATCC 10379]
          Length = 764

 Score =  294 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 187/700 (26%), Positives = 328/700 (46%), Gaps = 31/700 (4%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
               +   A++ + + I +RI+ +G+SE  I     +RI ++L G +D    R++L T A
Sbjct: 60  EGQTIDEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLSTQA 119

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            ++   +       G                  +  +++      G   +   K  +   
Sbjct: 120 NLTIRDIEDKVLLDGSDLEENGASQGFDQNNKPDVNLKLKDADKFGNITSEISKRGQGQN 179

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +                   KP         ++AP + Q I S   QI+GNFT++ A  
Sbjct: 180 LMVIWMDFNEGDSFKAEAAKEKPK-------YVSAPQVAQTINSKDVQITGNFTVKEAKE 232

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           +AA+L +G+LP+KL  +   +VGA  G+D++++   A    L +I LFM+ +Y   G VA
Sbjct: 233 MAALLNSGALPVKLTEIYSNSVGAQFGADALHQTVYAGAVALAIICLFMLFIYRVPGFVA 292

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
              +   V +T+   +++   LTLP IA ++LG+G+AVD+NI++ ERI+EE R    +  
Sbjct: 293 SVMMVAYVYITVVFFNMISGVLTLPGIAALILGVGMAVDANIIMYERIKEEVRAGYPLKK 352

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +   G  ++  TIFDS  T +IA VVLF FG  +V+GFA  + LSIL+S  TA+   R +
Sbjct: 353 AYLDGAKQSLWTIFDSQFTTVIAAVVLFIFGTSSVKGFATMLLLSILVSFITAVFGTRLL 412

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFS 557
           +  ++                  I +                + F +       +SI   
Sbjct: 413 LSLLVNSNIFNKHPGYFGVSKKSIHETKFGINSLNLSTKFEWLSFTKHMKKFFALSIAIM 472

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           I     L  + LN GIDF  G ++ V AN  + +  ++ +L +L++ D        +K  
Sbjct: 473 IAGSISLGMNKLNLGIDFSSGTRIDVAANTELSVEKIQEDLNNLKVKDEKIVLSPDKKQA 532

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +        S       + ++ K           N  +V P I +EL +  +  +I ++
Sbjct: 533 TI-------HSKESFEQDKSIEIKEYFAKKYQKDANLSVVSPVIGKELAKNALFALIYAS 585

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           I ++IY+  RF+W   L ++  L+ D+   +   +L  +E ++T +AAVLT++GYS+ND 
Sbjct: 586 IGIIIYVAFRFEWRMGLTSVIALLHDVCIIIFIASLLRLEIDITFIAAVLTIVGYSINDT 645

Query: 738 VVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +V +DR+R++M+      +      L+D S+ +TL RS+ T +   I+V+ M + G S I
Sbjct: 646 IVTFDRIREHMRHEKVLTSKEQIYKLVDVSLRQTLTRSINTVLTVIITVVVMLLLGSSSI 705

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833
            SF + +  G++    SS+FIAA +   +      K  +I
Sbjct: 706 YSFNVALLIGLIFGLYSSLFIAAQLWAVLKVRELNKKGKI 745



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/126 (11%), Positives = 48/126 (38%), Gaps = 14/126 (11%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65
           + + +  + +++       +S  +         +++LGLDL+GG  ++ +V+        
Sbjct: 14  IIAFLSLVVIILTSIGLTSKSNAE---------KVNLGLDLQGGFEVLYQVEPLKEGQTI 64

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               ++  +D +   +   G+    +  +  N+I +  A  + +E+    ++        
Sbjct: 65  DEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLSTQANLTIR 124

Query: 125 KLNVDP 130
            +    
Sbjct: 125 DIEDKV 130


>gi|255348819|ref|ZP_05380826.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis 70]
 gi|255503359|ref|ZP_05381749.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis 70s]
          Length = 1400

 Score =  294 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 165/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%)

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
            +   SDEL + L K G+    M++  + I +S   +    +     T  +          
Sbjct: 605  IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGAAGISSADILGTSKMSFHVVNEQFS 664

Query: 130  PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186
             +  L          +  +  ++D+    AI +    +           +  +  +   +
Sbjct: 665  SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724

Query: 187  HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                 +       S   Q      +    + +           +      +        +
Sbjct: 725  GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784

Query: 247  VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302
              +    +       D +        ++     +     T++ +                
Sbjct: 785  GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            + +  +        A +SGNF+      LAA L++G++     I+ E  V  +LGS    
Sbjct: 845  VISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQRV 904

Query: 363  KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            +G  ++V GLV++++ M V Y   G++A  ++ LN++L  A +  L A LTL  +AGI+L
Sbjct: 905  QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964

Query: 423  GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             +G+AVD+N+LV ERIREE    +S+  S++ G+ +A+S IFDSN+T ++A+ +L     
Sbjct: 965  AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024

Query: 483  GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
            G ++GFA+T+ + I  SMFTA+ + +   +  ++    K+ +         I        
Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597
               R W V   +L   C           +G+DFKGG  L + ++          SV+R  
Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSDVCEYNPEQMCSVLRKR 1140

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647
             + + +    ++    + +  V++           ++     ++                
Sbjct: 1141 FQQIGLSSRDYRVRRADSSEKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200

Query: 648  ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
                       ++  +   V  ++S ++  + ++ +  +   +L Y+ +RF+W +A  AI
Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILFYVSLRFEWRYAFSAI 1260

Query: 698  TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              L+ D+  T        F L  I+ +L A+ A++T++GYS+N+ ++++DR+R++ +   
Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
             +     LI+ ++ +TLGR+V T+      ++ +   GG  I +FA  M  GI++   SS
Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379

Query: 813  IFIAAPILLFIYDWRAKNA 831
            ++IA P+LLF+     +N+
Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398


>gi|23099482|ref|NP_692948.1| bifunctional preprotein translocase subunit SecD/SecF
           [Oceanobacillus iheyensis HTE831]
 gi|22777711|dbj|BAC13983.1| protein-export membrane protein [Oceanobacillus iheyensis HTE831]
          Length = 748

 Score =  294 bits (751), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 189/698 (27%), Positives = 339/698 (48%), Gaps = 32/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
             +V    +E +++ +  R++++GISE+ I   G +RI +QL G  + +  R++L T+A 
Sbjct: 54  SQEVSQSLLEGTVQTLNDRVNRLGISEAVIDIEGDNRIRVQLAGVDNQAEAREMLSTSAN 113

Query: 212 MSFHKVLPNNSKKGFMF--GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++F  V  N    G     G             +              T          +
Sbjct: 114 LTFRDVNDNLYLDGTDLVEGSAKQDFDPNTNAPIVTLQLKDASKFGDVTTEISEMQDSRL 173

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     + G     E  +               ++AP ++  I S    I+GNFT+E+A 
Sbjct: 174 VIWMDYQEGDSFEEEAAKAEPK----------YVSAPNVDGPINSSNVMINGNFTVESAQ 223

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A ++ +GSLP+ +  +   +VGA  G  ++ +   A + G+ LI+LFMI  Y   G++
Sbjct: 224 QMADIINSGSLPVHMTEIFSTSVGAQFGEQALNETVFAGIVGVGLIILFMIGFYRFTGII 283

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++ + V L + +  +L   LTLP IA ++LG+G+AVD+N++  ERI+EE R  +SV 
Sbjct: 284 AAINLAVYVYLVILVFEMLNGVLTLPGIAALILGVGMAVDANVITFERIKEELRLGKSVK 343

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +   G S ++ TI D+NIT LIA VVLF FG  +V+GFA  + +SI++S  TA+   R 
Sbjct: 344 AAFKSGNSNSFITILDANITTLIAAVVLFIFGTSSVKGFATMLIISIILSFLTAVLGTRV 403

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDC-----------IAIQFMRARFWGVGISILFSI 558
           ++   ++   +K+           I D             +I F++ R      + +  I
Sbjct: 404 LLGLWVQSGFLKNRKAWLGVNKTQIQDIAKAEEEPKILGRSINFVKHRKKFFITTSIIVI 463

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                +    +N G+DF  G ++ V+A++ +    V      L     S           
Sbjct: 464 VGAIAIGIFRINPGVDFTSGSRVEVVADQSLTAEEVEDQFAELGHEVNSVNLSGENNQIA 523

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V       D      V +   +   +        +  +V P + +EL++  I  V I++I
Sbjct: 524 VARFDTVLDESGVDEVQQHFNELYGQT------PSISVVSPIVGQELVKNAIYAVSIASI 577

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            M+ Y+ IRF+++F + A+  L+ D+   L  F++  IEFN+T VAA+LT++GYS+N+ +
Sbjct: 578 FMIAYVTIRFEFFFGITAVVALLHDVFLMLVLFSVTQIEFNVTIVAAILTIVGYSINNTI 637

Query: 739 VVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V++DR+R+N++      +F+    ++++SI ++  R++ TS+   I+VL   V G + I 
Sbjct: 638 VIFDRIRENIRREKRVKTFKVLARVVNRSIVQSFTRTMNTSVTTIIAVLAFLVLGATSIW 697

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           SFA+ +  G++    SS+F A+ + +       KN  +
Sbjct: 698 SFALALLIGLLAGTYSSLFFASQLWMVWRGRTVKNKPV 735



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 51/434 (11%), Positives = 112/434 (25%), Gaps = 44/434 (10%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           +    +     ++   G++      + +              ++LGLDL+GG  ++ EV 
Sbjct: 3   KRGRIVAFFLVVLVLAGVIGTTFTNITKD-------------VNLGLDLQGGFEVLYEVE 49

Query: 61  ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116
                 +     L+     L   + + GI    +  +  N+I +  A    +    + ++
Sbjct: 50  PVDQSQEVSQSLLEGTVQTLNDRVNRLGISEAVIDIEGDNRIRVQLAGVDNQAEAREMLS 109

Query: 117 LFLQGVNSKLNV----------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
                    +N           +               + L   +  +      E S   
Sbjct: 110 TSANLTFRDVNDNLYLDGTDLVEGSAKQDFDPNTNAPIVTLQLKDASKFGDVTTEISEMQ 169

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
             + +  +   E       + +   +     +              +F            
Sbjct: 170 DSRLVIWMDYQEGDSFEEEAAKAEPKYVSAPNVDGPINSSNVMINGNFTVESAQQMADII 229

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
             G   +  ++     V       G        N         V +    M     F   
Sbjct: 230 NSGSLPVHMTEIFSTSV-------GAQFGEQALNETVFAGIVGVGLIILFMIGFYRFTGI 282

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
              I   + V L   V         +P   A I G      A ++        L +  ++
Sbjct: 283 IAAINLAVYVYLVILVFEMLNGVLTLPGIAALILGVGMAVDANVITFERIKEELRLGKSV 342

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
                 G      +I       +   V++ +F           +    F  +++   +LS
Sbjct: 343 KAAFKSGNSNSFITILDANITTLIAAVVLFIF---------GTSSVKGFATMLIISIILS 393

Query: 407 LLGATLTLPSIAGI 420
            L A L    + G+
Sbjct: 394 FLTAVLGTRVLLGL 407


>gi|317502038|ref|ZP_07960220.1| protein-export membrane protein SecD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331090446|ref|ZP_08339327.1| hypothetical protein HMPREF1025_02910 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316896512|gb|EFV18601.1| protein-export membrane protein SecD [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330401193|gb|EGG80786.1| hypothetical protein HMPREF1025_02910 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 786

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 200/698 (28%), Positives = 338/698 (48%), Gaps = 14/698 (2%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   D+     ++ ++  +++R++Q    E+   + G +RI I++PG +D + + + 
Sbjct: 51  ITYQVKGDKPSQEDMDDTVYKMQRRVEQYST-EAQAYQEGDNRISIEIPGVEDANAILEE 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVR-FLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           LG    + F K    +  + +  G   ++ +   ++      + ++G  +  ATA     
Sbjct: 110 LGQPGSLYFIKHKDADGNENYTLGAEGYVLNKTIDELKANGSIVLTGSEVKSATAGAWDD 169

Query: 265 THK----PVVDISFDEMGARRFFEVTRD---NIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                    VD++ +  G   F   T +   N    +A+  DG +++ P +N  I +G+A
Sbjct: 170 QKTGKKMYGVDLTLNAEGTDAFAAATTEAYNNGNDTIAIYYDGELISVPSVNAIIENGQA 229

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G+ + E A  +A+ +R G L ++L  +  + VGA LG ++I     A   GL  + L
Sbjct: 230 QITGSASYEEADNIASTIRIGGLNLELEEISSKVVGAQLGEEAISTSLKAGAIGLAAVCL 289

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FMI +Y   G  +  ++ + V L L LL+    TLTLP IAGI+LGIG+AVD+N+++  R
Sbjct: 290 FMIFVYLLPGFASSIALVIYVGLILLLLNAFDITLTLPGIAGIILGIGMAVDANVIIFAR 349

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           ++EE     SV  +L  GF +A S I D NIT LIA  VL+  G G V+GFA T+ L I+
Sbjct: 350 VKEELSAGASVHSALRAGFHKAMSAILDGNITTLIAAAVLWLRGSGPVKGFAQTLALGIV 409

Query: 498 ISMFTAISIVRAMMIFIIRYKKM-KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +SMFTA+ + R ++            +          I      +        + +S   
Sbjct: 410 VSMFTALVVTRLLVYSFYAIGIRNPKVYGRVKEERKPIDFLGKKKVFFVVSIALCLSGFV 469

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +          LNY +DF GG    V  ++   L  V S +          +N    + 
Sbjct: 470 VMGINSARDVGALNYSLDFVGGTATTVTFDKEYTLEEVDSQMVPELEKITGDKNVQ-VQT 528

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                Q             E  +  +     +     TE +   +S E+    ++ VII+
Sbjct: 529 VKGTNQVVFKTQTLDLEKREAFESYMQNEFGVKEEIATENISSTVSSEMRMDAVIAVIIA 588

Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I ML+YIW RFK   FA  A+  L+ D+   L F+A+  +    T +A +LT++GYS+N
Sbjct: 589 TIFMLLYIWFRFKDIRFATSAVVALLHDVLVVLAFYAIARVSVGNTFIACMLTIVGYSIN 648

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V++DR+R+ MK  + +   +DL+++ I +TL RS+YTS+  F+ V  + V G S I 
Sbjct: 649 ATIVIFDRIREEMKNSSRNTDLKDLVNRCITQTLTRSIYTSLTTFVMVAVLYVMGVSSIK 708

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            FA+P+  GIV  A SS+ I   +   +     KNA++
Sbjct: 709 EFALPLMAGIVCGAYSSVCITGALWYVM--KTGKNAKV 744


>gi|15605175|ref|NP_219961.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis D/UW-3/CX]
 gi|255311259|ref|ZP_05353829.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis 6276]
 gi|255317561|ref|ZP_05358807.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis 6276s]
 gi|3328880|gb|AAC68047.1| SecD/SecF fusion protein [Chlamydia trachomatis D/UW-3/CX]
 gi|296435975|gb|ADH18149.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis G/9768]
 gi|296436902|gb|ADH19072.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis G/11222]
 gi|296437836|gb|ADH19997.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis G/11074]
 gi|297140336|gb|ADH97094.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydia
            trachomatis G/9301]
 gi|297748579|gb|ADI51125.1| SecD [Chlamydia trachomatis D-EC]
 gi|297749459|gb|ADI52137.1| SecD [Chlamydia trachomatis D-LC]
          Length = 1400

 Score =  293 bits (750), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 165/799 (20%), Positives = 334/799 (41%), Gaps = 42/799 (5%)

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
            +   SDEL + L K G+    M++  + I +S   +    +     T  +          
Sbjct: 605  IDKVSDELYARLNKLGVSEVGMQREGDHIQVSVPGAAGISSADILGTSKMSFHVVNEQFS 664

Query: 130  PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII---RQRIDQIGISESTIQRLGS 186
             +  L          +  +  ++D+    AI +    +           +  +  +   +
Sbjct: 665  SRSPLRYEVQTFLDYLWFTARSLDECSPQAINRLAGALFHGDNGSAPANVRVAVEKLREA 724

Query: 187  HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                 +       S   Q      +    + +           +      +        +
Sbjct: 725  GLSFSKELEGGSASLDTQYSMIAIEKESREQVNPLMIVFRNHALEGASLKNIRPEFAVGE 784

Query: 247  VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----GRV 302
              +    +       D +        ++     +     T++ +                
Sbjct: 785  GYVLNFGVKDKATFSDGRETPVQQFHAWTSKFCQEGVSGTKNGLFSGGRGWRMAVVLDGY 844

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            + +  +        A +SGNF+      LAA L++G++     I+ E  V  +LGS    
Sbjct: 845  VISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQRV 904

Query: 363  KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            +G  ++V GLV++++ M V Y   G++A  ++ LN++L  A +  L A LTL  +AGI+L
Sbjct: 905  QGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGIIL 964

Query: 423  GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             +G+AVD+N+LV ERIREE    +S+  S++ G+ +A+S IFDSN+T ++A+ +L     
Sbjct: 965  AMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLDT 1024

Query: 483  GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
            G ++GFA+T+ + I  SMFTA+ + +   +  ++    K+ +         I        
Sbjct: 1025 GPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFLK 1080

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRSN 597
               R W V   +L   C           +G+DFKGG  L + ++          SV+R  
Sbjct: 1081 ECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSDVCEYNPEQMCSVLRKR 1140

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP---------- 647
             + + +    ++    + +  V++           ++     ++                
Sbjct: 1141 FQQIGLSSRDYRVRRADSSEKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLSD 1200

Query: 648  ----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
                       ++  +   V  ++S ++  + ++ +  +   +L Y+ +RF+W +A  AI
Sbjct: 1201 SGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILFYVSLRFEWRYAFSAI 1260

Query: 698  TTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              L+ D+  T        F L  I+ +L A+ A++T++GYS+N+ ++++DR+R++ +   
Sbjct: 1261 CALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREKL 1320

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
             +     LI+ ++ +TLGR+V T+      ++ +   GG  I +FA  M  GI++   SS
Sbjct: 1321 FT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLSS 1379

Query: 813  IFIAAPILLFIYDWRAKNA 831
            ++IA P+LLF+     +N+
Sbjct: 1380 LYIAPPLLLFMVRKEEQNS 1398


>gi|291545645|emb|CBL18753.1| protein translocase subunit secF/protein translocase subunit secD
           [Ruminococcus sp. SR1/5]
          Length = 808

 Score =  293 bits (749), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 216/720 (30%), Positives = 352/720 (48%), Gaps = 24/720 (3%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
               KN+           +  Q          +  ++  ++QR+ Q    E+   + GS+
Sbjct: 33  TGSAKNINTGLDLAGGVSITYQAKDSNPSKEDMSDTVYKMQQRVSQYST-EAQAYQEGSN 91

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG---VRFLRDSDGNQYLVE 244
           RI I++PG  D + + + LG    + F      +  + F  G     ++           
Sbjct: 92  RITIEIPGVSDANAILEELGKPGSLYFIDQTDADGNQNFTTGNSESGYVLARSIEDIQKA 151

Query: 245 DKVEISGIHLNGATANFDPKT----HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V + G  +  A       +     K  V ++  + G  +F E T+ N+GK +A+V D 
Sbjct: 152 GSVVLEGTDVADAEGGAYQDSSTSSQKYAVSLTLTKNGKTKFAEATKANVGKQIAIVYDD 211

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VL+AP +N+ I  GKAQI+G  + E A  LA+ +R GSL ++L  +    V A LG ++
Sbjct: 212 QVLSAPNVNEEISGGKAQITGMASTEEAQNLASYIRIGSLSLELTELRSSVVAAQLGEEA 271

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I     A   GLV+++L MI+ Y   GLVA  ++ L   L L  L+    TLTLP IAGI
Sbjct: 272 IATSVKAGAIGLVIVMLIMIIAYRIPGLVASVALVLYTTLMLITLNAFDITLTLPGIAGI 331

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +LGIG+AVD+N+++  RIREE     SV  ++  GF +A+S IFD NIT LIA  VL + 
Sbjct: 332 ILGIGMAVDANVIIYARIREEIAAGLSVHAAIKSGFGKAFSAIFDGNITTLIAACVLMWL 391

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G G+V+GFA T+ + I+ISMFTA+ I R ++  +        I +     + +  +   +
Sbjct: 392 GSGSVKGFAYTLAMGIVISMFTALVISRLVINAVYA------IGVRDPKFYGIAKERKVV 445

Query: 541 QFMRARFWGVGISILFSICSICLLFTHG-------LNYGIDFKGGIQLGVLANRPVDLSV 593
            F+  R     +SI+  +C    +  H        +NY ++F GG    V  N+ +D+  
Sbjct: 446 DFVGKRKIFFAVSIILILCGPVGMLVHSNVIGDKAMNYSLEFSGGTSTNVTFNKEMDIKE 505

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S +  +       +N    K            S+       + K         +++  
Sbjct: 506 IDSEVTPVVEAVTGDKNVQPTKVQGTNQVVIKTRSLDLKEREALNKALEENFDVDTSLIT 565

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
           +E +   +S E+ R  IV VI++AI ML+YIW RFK   FA  A+  L+ D+   L F+ 
Sbjct: 566 SENISATVSNEMRRDAIVAVIVAAIFMLLYIWFRFKDIRFASSAVLALLHDVLVVLAFYV 625

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS--FRDLIDKSINETLG 770
           +       T +A +LT++GYS+N  +V++DR+R+NM+          +++++ S+ ETL 
Sbjct: 626 ISRTSVGNTFIACMLTIVGYSINATIVIFDRIRENMRGRKKVEDEKLKEIVNTSVTETLT 685

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           RS+YTS+  F+ V  + V G S I  FA P+  GI+  A SS+ I   +   +  +R   
Sbjct: 686 RSIYTSLTTFVMVAILYVMGVSSIKEFAAPLMVGIIGGAYSSVCITGALWYTMKTFRKNR 745



 Score =  104 bits (257), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 89/233 (38%), Gaps = 4/233 (1%)

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           ++   D      +  +          G +  +         +I  +    T   + +V  
Sbjct: 206 AIVYDDQVLSAPNVNEEISGGKAQITGMASTEEAQNLASYIRIGSLSLELTELRSSVVAA 265

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  E I   +    I  + +++ + I ++    L A   L+L  T  L     F I   
Sbjct: 266 QLGEEAIATSVKAGAIGLVIVMLIMIIAYRIP-GLVASVALVLYTTLMLITLNAFDITLT 324

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +A ++  IG +V+  V++Y R+R+ +      +S    I     +        ++  
Sbjct: 325 LPGIAGIILGIGMAVDANVIIYARIREEIAA---GLSVHAAIKSGFGKAFSAIFDGNITT 381

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            I+   +   G   +  FA  +A GIV++  +++ I+  ++  +Y    ++ +
Sbjct: 382 LIAACVLMWLGSGSVKGFAYTLAMGIVISMFTALVISRLVINAVYAIGVRDPK 434


>gi|319892690|ref|YP_004149565.1| Protein-export membrane protein SecD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162386|gb|ADV05929.1| Protein-export membrane protein SecD [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464272|gb|ADX76425.1| preprotein translocase subunit SecD/SecF [Staphylococcus
           pseudintermedius ED99]
          Length = 759

 Score =  293 bits (749), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 177/698 (25%), Positives = 327/698 (46%), Gaps = 30/698 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            +++ + A++ + + + +R++ +G+SE  IQ    +RI +QL G QD ++ R++L + A 
Sbjct: 54  GEKIDNTAVQSTAKTLERRVNVLGVSEPKIQVEDQNRIRVQLAGVQDQNQARKILSSQAN 113

Query: 212 MSFHKVLPNN--SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++          + K  + G                            T     K    +
Sbjct: 114 LTIRDADDKVLLTGKDLVQGSAKQEFKQNTNQPAVTFKLKDSDKFKKVTEEISKKQENVM 173

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V     E G     E T+++                  IN           G   I  A 
Sbjct: 174 VVWLDFEKGDSYEKEKTKED------PKFISAASVNQPINSTNVEISGGFQGEKGISEAK 227

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L +GSLP++L  +   +VGA  G D++ K   A + G+ +I LFM++ Y   G+V
Sbjct: 228 QIADLLNSGSLPVELKEIYSTSVGAQFGQDALDKTINASMIGIGIIFLFMLLFYRLPGIV 287

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LT+   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++ 
Sbjct: 288 AVITLTTYIYLTMVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDEIRIGRTLK 347

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TI D+N+T ++A  VLFFFG  +V+GFA  + L+IL+S  TA+ + R 
Sbjct: 348 QAYKKANKSSFITILDANLTTVLAAAVLFFFGESSVKGFATMLLLAILMSFVTAVFLTRV 407

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILF 556
           ++  ++     K        +   I                  + FM+       +S + 
Sbjct: 408 LLSLVVHSNVFKKKLWWFGVKQSQIHDINKGYDVHELSTPYDKVDFMKWAKPLFALSGVV 467

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L    LN GIDF  G ++ + +N+ +  + V   +ES+ +             
Sbjct: 468 IVAGVIILAIFKLNLGIDFTSGTRVDLQSNQKLTQAQVEKTMESIDLKPNQLSIGGSNNE 527

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                  +  +     +V + +K +  +        +   V P I +EL +  ++ VII+
Sbjct: 528 NASMQFKRDLNKDEVAKVTDTLKSQYGKE------PSVNTVSPVIGQELAKNAMLAVIIA 581

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I M+IYI +RF+W   + +I +L+ D    +  F+LF +E ++T +AAVLT+IGYS+ND
Sbjct: 582 SIGMIIYISLRFEWRMGIASIISLLHDAFMIIAVFSLFRLEVDITFIAAVLTIIGYSIND 641

Query: 737 KVVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+ +              +++ SI +TL RS+ T +   I V+ + V G S 
Sbjct: 642 TIVTFDRVREMLSKIKVITKEDQIDYIVNSSIRQTLTRSINTVLTVVIVVIALLVLGASS 701

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F++ +  G++    SSI IA P+   +     + +
Sbjct: 702 IFNFSLALLIGLLSGVYSSIIIAVPLWGMLKKRELRKS 739



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 105/258 (40%), Gaps = 5/258 (1%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +  + + +   +       ++  +   I   S        N  +   +Q    +++ + +
Sbjct: 170 ENVMVVWLDFEKGDSYEKEKTKEDPKFISAASVNQPINSTNVEISGGFQGEKGISEAKQI 229

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
             +    +  V L  I +   VG +  ++ + K I   +I    + +++ + ++    + 
Sbjct: 230 ADLLNSGSLPVELKEIYS-TSVGAQFGQDALDKTINASMIGIGIIFLFMLLFYRLP-GIV 287

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A+ TL   I  T+  F        L  +AA++  +G +V+  +++Y+R++  +++     
Sbjct: 288 AVITLTTYIYLTMVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDEIRI---GR 344

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           + +    K+   +    +  ++   ++   +  +G S +  FA  +   I+++  +++F+
Sbjct: 345 TLKQAYKKANKSSFITILDANLTTVLAAAVLFFFGESSVKGFATMLLLAILMSFVTAVFL 404

Query: 816 AAPILLFIYDWRAKNARI 833
              +L  +        ++
Sbjct: 405 TRVLLSLVVHSNVFKKKL 422


>gi|308174466|ref|YP_003921171.1| protein-export membrane protein [Bacillus amyloliquefaciens DSM 7]
 gi|307607330|emb|CBI43701.1| protein-export membrane protein [Bacillus amyloliquefaciens DSM 7]
 gi|328554386|gb|AEB24878.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           amyloliquefaciens TA208]
 gi|328912791|gb|AEB64387.1| protein-export membrane protein [Bacillus amyloliquefaciens LL3]
          Length = 739

 Score =  293 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 193/696 (27%), Positives = 337/696 (48%), Gaps = 28/696 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  +++ + +R + +G+SE  IQ  G++RI +QL G  + +R R++L T A+
Sbjct: 53  GDKITKDVLVSTVQALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILSTEAQ 112

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           +SF              G   + +     +       I  + L  A    +       V 
Sbjct: 113 LSFRDTNDKELLN----GSDLVENGAKQTFDPTTNEPIVSVKLKDADKFGEVTKK---VK 165

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
                     + +  + +  K        + ++AP ++Q + +    I G FT++ A  L
Sbjct: 166 KMAPNNQLVIWLDYQKGDSFKKEVGKKHPKYVSAPNVSQELNTKDVTIEGQFTVQKAKDL 225

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AG+LP+KL      +VGA  G  +++    A + G+ L+ LFM++ Y   GL+A 
Sbjct: 226 ANILNAGALPVKLTEKYSTSVGAQFGQQALHDTVEAGIIGIALVFLFMLLYYRLPGLIAV 285

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + V +TL +   + A LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +SV  +
Sbjct: 286 ITLSVYVYITLQVFDWMQAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+++TIFD+NIT +IA VVLF FG  +V+GFA  + LSIL S  TA+ + R ++
Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++  + +         +   I D                  F   R +    S   +I
Sbjct: 406 SLLVESRWLDRKKGWFGVKKKHIMDIQKTDENTEPHTAFQKWDFTSKRKYFFIFSSAVTI 465

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I +L    LN GIDF  G ++ V +N  +    V  + +SL +   +      E +  
Sbjct: 466 AGIIILLIFKLNLGIDFASGARIDVQSNHALTAQQVEKDFDSLGMDPENVVLSGKENHVA 525

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                          +    K K           N   V P + +EL R  +  V I++I
Sbjct: 526 AARFVGEPSKEKIAEIKTYFKDKYGAE------PNVSTVSPTVGKELARNALYAVAIASI 579

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF++  A+ AI +L+ D    + FF++  +E ++T +AAVLT+IGYS+ND +
Sbjct: 580 GIIIYVSIRFEYRMAVAAIVSLLYDAFFIVAFFSITRLEVDVTFIAAVLTIIGYSINDTI 639

Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R+ MK            +++ S+ +T  RS+ T +   I V+ + + G S I +
Sbjct: 640 VTFDRIREQMKKRKPKSFADLEHIVNLSLQQTFTRSINTVLTVVIVVVVLLILGSSSITN 699

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           F++ +  G++    SS++IAA + L       K+ +
Sbjct: 700 FSVALLIGLLTGVYSSLYIAAQMWLVWKGKEFKSKK 735



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/408 (11%), Positives = 112/408 (27%), Gaps = 22/408 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+       L +    + L+     +  +              I+LGLDLRGG  ++ +V
Sbjct: 1   MKKGR----LIAFFLIVLLIGTGLGYFTKPAA---------KNITLGLDLRGGFEVLYDV 47

Query: 61  DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
                 D      L      L       G+   +++ +  N+I +  A    +    + +
Sbjct: 48  QPVKKGDKITKDVLVSTVQALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107

Query: 116 TLFLQGVNSKLNVD---PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
           +   Q      N        +L+    ++      ++  +   +  A +      + +  
Sbjct: 108 STEAQLSFRDTNDKELLNGSDLVENGAKQTFDPTTNEPIVSVKLKDADKFGEVTKKVKKM 167

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
                              +  G++ P  +     +    +    +           +  
Sbjct: 168 APNNQLVIWLDYQKGDSFKKEVGKKHPKYVSAPNVSQELNTKDVTIEGQFTVQKAKDLAN 227

Query: 233 LRDSDGNQY-LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           + ++      L E      G        +   +     + + F  M            I 
Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALHDTVEAGIIGIALVFLFMLLYYRLPGLIAVIT 287

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             + V +  +V         +P   A I G      A I+        L +  ++     
Sbjct: 288 LSVYVYITLQVFDWMQAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
            G      +I+      +   V++ +F       +  +   SI  + I
Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFI 395


>gi|291459936|ref|ZP_06599326.1| protein-export membrane protein SECD [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291417277|gb|EFE90996.1| protein-export membrane protein SECD [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 736

 Score =  293 bits (748), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 185/598 (30%), Positives = 305/598 (51%), Gaps = 16/598 (2%)

Query: 244 EDKVEISGIHLN--GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              V ++G  +              + ++ ++F E GA++F + T DN+GKPL +V +G+
Sbjct: 124 SGNVLLTGDDVKTASPAMTNQNNNKEYIIRLAFKEEGAKKFAQATSDNVGKPLYIVYNGK 183

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            ++AP + +AI  G+A I+G  + E A  +A+ +R G+LP+KL  +    +GA LG ++I
Sbjct: 184 TISAPTVQEAITGGEASITGMDSYEKASTIASTIRIGALPLKLTELRSNVIGATLGQEAI 243

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A   GL L++LFM++ Y   GL A F++ + V L + LL     TLTLP IAGI+
Sbjct: 244 TSSLKAAAIGLSLVMLFMLIFYLLPGLSASFALLMYVGLEMVLLQAFEVTLTLPGIAGII 303

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+AVD+N+++  RI+EE  +  +V  ++  G+S+A S I D NIT LIA  VL+  G
Sbjct: 304 LSIGMAVDANVIIFTRIKEELGQGNTVEKAIKAGYSKALSAILDGNITTLIAAAVLYLRG 363

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
            G V+GFA T+ + I++S+ TA+ + R  M          ++  +    + +      I 
Sbjct: 364 SGTVKGFATTLAIGIVVSLITALFVTRGFM------WCFLTLGASSPKLYGIKKPAKLID 417

Query: 542 FMRARFWGVGISILFSICSICLLFTHG------LNYGIDFKGGIQLGVLANRPVDLSVVR 595
           F+  R     +S +  +     +  +        NY +DFKGG    +  N  + L  + 
Sbjct: 418 FVGMRKVAYLLSAVLILSGFVAMGMNKRSIGNLFNYDLDFKGGSSTNITLNEDLPLDQID 477

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLSTIQNT 654
             L  +        +           +         T     + K I E          T
Sbjct: 478 KELVPVFTAVTGGDSSTQASKVAGTNEVIIKTRTLTTDERTELYKDIAEKFSVDEQKITT 537

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
           E +   +S E+ R     ++I+ + MLIYIW+RFK   FA  ++  L  D+  T+ F+A+
Sbjct: 538 ENISGAVSLEMKRDAAWALLIAILFMLIYIWVRFKDLKFASASVAALAHDVLVTITFYAV 597

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F      T +A VLT++GYS+N  +V++DR+R+N+       + RD ++ +++ETL RS+
Sbjct: 598 FRWAVGSTFIACVLTIVGYSINATIVIFDRIRENLNEPGGRKNLRDSVNMAVSETLTRSI 657

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS+  FI+VL + ++G S I  F +P+  GIV  A SS+ IA P+         K  
Sbjct: 658 NTSLTTFITVLMLFLFGVSSIRDFTMPLMVGIVSGAWSSVMIAGPLWYDFVQLAEKRR 715



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/385 (10%), Positives = 101/385 (26%), Gaps = 23/385 (5%)

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
            I LGLDL GG  +  + DE +     +     +L+   +         ++  N+I +  
Sbjct: 40  TIRLGLDLNGGVSITYQTDEPNPTAEQMSDTRYKLQLKAQSYSTEAQVYQEGANRINIDI 99

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
             +     I  ++                +   +   ++  +++L+ +++         Q
Sbjct: 100 PGATDANEILKELG---------------EPGSLQFKDQSGNVLLTGDDVKTASPAMTNQ 144

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
           +               +      +   + +        +          ++  +      
Sbjct: 145 NNNKEYIIRLAFKEEGAKKFAQATSDNVGKPLYIVYNGKTISAPTVQEAITGGEASITGM 204

Query: 223 KKGFMFGVRFLRDSDGN--QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                          G     L E +  + G  L         K     + +    M   
Sbjct: 205 DSYEKASTIASTIRIGALPLKLTELRSNVIGATLGQEAITSSLKAAAIGLSLVMLFMLIF 264

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
                   +    + V L+  +L A  +   +P     I        A ++        L
Sbjct: 265 YLLPGLSASFALLMYVGLEMVLLQAFEVTLTLPGIAGIILSIGMAVDANVIIFTRIKEEL 324

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
                + +    G      +I  G    +    +      +     G V  F+  L + +
Sbjct: 325 GQGNTVEKAIKAGYSKALSAILDGNITTLIAAAV------LYLRGSGTVKGFATTLAIGI 378

Query: 401 TLALLSLLGATLTLPSIAGIVLGIG 425
            ++L++ L  T         +    
Sbjct: 379 VVSLITALFVTRGFMWCFLTLGASS 403


>gi|315652214|ref|ZP_07905209.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Eubacterium saburreum DSM 3986]
 gi|315485520|gb|EFU75907.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Eubacterium saburreum DSM 3986]
          Length = 822

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 206/798 (25%), Positives = 350/798 (43%), Gaps = 51/798 (6%)

Query: 50  LRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE 109
           L+GG H     +     +   +       S +  E        +       S AD     
Sbjct: 30  LQGGKH----SNVTKVTHTAEETTITSAESSVSGESTSNGESTKASEN---SSADKSKAN 82

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI--------------VLSQNNIDQV 155
           N + +     Q    K      +         +  +              +  Q      
Sbjct: 83  NESSQSGESSQAEPGKEPESADEKKDENGKSSKFGMGKIKLGLDLAGGVSITYQTVQQNP 142

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
               +  ++  ++QR+      E+ + R G +RI I +PG  D + +   LG    + F 
Sbjct: 143 SDEDMADTIYKLQQRVQNYST-EAEVYREGGNRINIDIPGVSDANAILDELGKPGSLLF- 200

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT--HKPVVDIS 273
                                       + +  ++G  +  A A         + VV ++
Sbjct: 201 -------------------------VDPQGQTVLTGDQVATAKAGIIDNNGKSEYVVSLT 235

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
           F + G++ F E T   IG+ +A++ D  V + P +  AI  G AQI+G  + + A  LA+
Sbjct: 236 FTDEGSKAFAEATAKLIGQRIAIIYDNVVYSNPTVQTAITGGNAQITGMTSYDEAKNLAS 295

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
            +R GSL ++L  +    VGA LG  +I     A V G V++  FMI  +   G  +  +
Sbjct: 296 TIRIGSLSLELEELRSNVVGAKLGQTAISTSMKAAVVGFVVLAAFMIGAFLLPGAASVIA 355

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           + L +IL + LLS    TLTLP IAGI+L IG+AVD+N+++  RI+EE    +SV+ S++
Sbjct: 356 LALYIILEILLLSAFEITLTLPGIAGIILSIGMAVDANVIIFTRIKEEIALGKSVYESIN 415

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            GF +A S I D N+T LIA  VL+  G G V+GFA T+ L I++SMFTA+ + + ++  
Sbjct: 416 SGFKKALSAIIDGNVTTLIAAAVLYVRGSGTVKGFAQTLALGIILSMFTALFVTKFILKA 475

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
                               I      +   +    V I  +              NYG+
Sbjct: 476 FYNVGLDDVKFYGKKPDRESINFVGMRKITLSVAAVVLIIGVIFAGVNKSQIGGFFNYGL 535

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           DFKGG    V  N+   L  +   +  +            +K            S++   
Sbjct: 536 DFKGGTSTNVTFNKDYSLEEISKEIVPVVESVTGEAGTQTQKVQGTNQVIIKTRSLSLDE 595

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
             ++ K    +    +     E +   +S E+ +  +V  +++ I MLIYIWIRF+ + F
Sbjct: 596 REKLNKALADKFGVDAEKITAESISGAVSSEMKKDAVVATVLATILMLIYIWIRFRDFSF 655

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           A G+I  L+ D+   +  +A+F      T +A +LT++GYS+N  +V++DR+R+N  + +
Sbjct: 656 AAGSILALLHDVFIVISCYAIFRWSVGSTFIACILTILGYSINATIVIFDRIRENKAILS 715

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
            S +  +LI+KS+ ETL RS+Y+S+  FI++  + + G   I  FA+P+  GIV    SS
Sbjct: 716 KSTAKEELINKSVTETLTRSIYSSLTTFITIFILFLMGVPSIREFALPIMVGIVAGTYSS 775

Query: 813 IFIAAPILLFIYDWRAKN 830
           +F+++     + +   K 
Sbjct: 776 VFLSSVFWYLLSNKFDKK 793


>gi|284801917|ref|YP_003413782.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes 08-5578]
 gi|284995059|ref|YP_003416827.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes 08-5923]
 gi|284057479|gb|ADB68420.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes 08-5578]
 gi|284060526|gb|ADB71465.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes 08-5923]
          Length = 754

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 185/701 (26%), Positives = 340/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +R++ +G++E +IQ  G++RI +QL G  D +  R++L T
Sbjct: 51  ADGKGTVSKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N  +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  +           D   L+AP ++  + + K +ISG+FT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLAELLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G++A  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553
            R ++  +++   + +       +   I                    F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +  I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+++ +          
Sbjct: 461 AVIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGS 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             +     +             +   V P + +EL + G   +
Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     D ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R   +   +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAEL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +        +  VG +  ++ +++ I+  II  IA+ I++   ++    +
Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+    
Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 78/730 (10%), Positives = 193/730 (26%), Gaps = 34/730 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               L      L   +   G+   S++ +  N+I +  A    +      ++   Q    
Sbjct: 58  SKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S N I  +   + ++   + +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       ++DP+ L     ++   +    +  +        +  L +S      
Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAELLNSGALPVK 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++    S G                  V   F  M A          I       L   
Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNE-RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           P    +       +   I     +   +              F+              + 
Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAVIVIVGIVILSIFKLN 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             + F  G  A      T+  + +     AI +    ++F     K   +          
Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGSGSKTAVVSYKGTLSQND 537

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +         + +      ++  ++                    + + V     + ++ 
Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S L    I  I F     E +             +    +    +     + +   + 
Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704
            E +   +++ L +     +      +   + +          F     +G ++++   I
Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717

Query: 705 TKTLGFFALF 714
              +  + +F
Sbjct: 718 FMAMQLWYVF 727


>gi|296269604|ref|YP_003652236.1| protein-export membrane protein SecD [Thermobispora bispora DSM
           43833]
 gi|296092391|gb|ADG88343.1| protein-export membrane protein SecD [Thermobispora bispora DSM
           43833]
          Length = 748

 Score =  292 bits (746), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 204/686 (29%), Positives = 335/686 (48%), Gaps = 26/686 (3%)

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            A +++++I+R+R D +G+ E T+ R G  RI+++LPG  DP +   ++G TA+++FH V
Sbjct: 55  EATDRALDILRRRADALGVVEPTLVRSGERRIIVELPGVLDPRKAASVIGKTAQLTFHPV 114

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                          L D  G +  +           + A            V I F E 
Sbjct: 115 ----LGAADENDKDALADESGQKLRLGPAAISGDAVTDAAARTNPQMGPGWFVTIDFKES 170

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP-----------SGKAQISGNFTIE 326
           G  +                    VL   +I+                G  QI+G+FT+E
Sbjct: 171 GPWKKLTGEAACNPVGDPKRRIAIVLDNEIISSPQVDESVGCNVGITGGSTQITGSFTME 230

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +++ GSLP+ L +VE+R VG  LG+++I     A V G++L  LF++V+Y   
Sbjct: 231 EAQNLAVLIKGGSLPVPLELVEQRTVGPTLGAEAIEASAKAAVVGVILTTLFIVVIYRVV 290

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR--K 444
           GL+A  ++    +++ A L  +GATLTLP +AG VL IG+AVD+N+LV ER REE R   
Sbjct: 291 GLLAAIALASYALISYAGLVAIGATLTLPGLAGFVLAIGMAVDANVLVFERAREEYRASP 350

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            + +  +  +GF  A+S I DSNIT L+A  +LF+   G V+GF +T+ + +L S+ +A+
Sbjct: 351 ERGLKWASQLGFKNAWSAIADSNITTLLAAALLFWLASGPVKGFGVTLSIGVLASLISAM 410

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
            I R ++  IIR   +++  +  + R            M  R   +GI+ +  I +I   
Sbjct: 411 LITRVLVDLIIRKVPVRASGLGSIGRVRTWLTTRNPNLMARRRIWLGIAAVLLITAIAGP 470

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
              G N+G++F GG  +     +PVD    R  +          Q               
Sbjct: 471 VARGFNFGVEFTGGRIMEFATQQPVDAEAARQVVSDAGFPSAVVQRSQD--------AIS 522

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                     +  +++ + +     T +  E++GP +  EL R  I+ + ++  A L Y+
Sbjct: 523 VRTGQISADDVARIEEALDKRFGDVTKERDELIGPSLGDELRRNAIIALSLALAAQLAYL 582

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             RF+W F   A+  L LD    +G FA  G   +   +AA+LT++GYSVNDKVV++DR+
Sbjct: 583 AYRFRWTFGTAAVLALFLDCMVVIGLFAWLGKPIDGVFLAAMLTIVGYSVNDKVVLFDRV 642

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+   L    + F  +++ +I +T+ R+V T + A   +  +AV+GG  +  FAI +  G
Sbjct: 643 REEWPLRRKDV-FDGVVNSAILQTVPRTVNTGLGALFILAALAVFGGDSLQDFAIALLVG 701

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830
           I V   SS F+AAP  + +     + 
Sbjct: 702 ITVGTLSSSFVAAPAAIELEKINKQP 727



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/206 (16%), Positives = 62/206 (30%), Gaps = 9/206 (4%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEV-DEDDF--VNGFLQMYSDELRSFLKKEGIGVFS-MRQ 93
                   LGLDLRGG+ LV E  D               D LR      G+   + +R 
Sbjct: 22  FALTMPPRLGLDLRGGTQLVFEAKDSPKVKADAEATDRALDILRRRADALGVVEPTLVRS 81

Query: 94  IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN---LLVTTTEKEISIVLSQN 150
            + +I +           A  +    Q     +     +N    L   + +++ +  +  
Sbjct: 82  GERRIIVELPGVLDPRKAASVIGKTAQLTFHPVLGAADENDKDALADESGQKLRLGPAAI 141

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
           + D V   A   + ++       I   ES   +  +           DP R   ++    
Sbjct: 142 SGDAVTDAAARTNPQMGPGWFVTIDFKESGPWKKLTGEAAC--NPVGDPKRRIAIVLDNE 199

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +S  +V  +      + G       
Sbjct: 200 IISSPQVDESVGCNVGITGGSTQITG 225


>gi|289434807|ref|YP_003464679.1| protein-export membrane protein SecDF [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289171051|emb|CBH27593.1| protein-export membrane protein SecDF [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 754

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 188/701 (26%), Positives = 341/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +RI+ +G++E +IQ  GS+RI +QL G  D +  R++L T
Sbjct: 51  ADGEGTVSKQTMTDTVTALDKRINSLGVAEPSIQIEGSNRIRVQLAGVTDQAEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N+ +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSTNKPIVTLKLKSADKFADVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  + N             L+AP ++  + + K +ISGNFT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKKNPA----------YLSAPNVSSVLDTDKVEISGNFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L AG+LP+++  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLADLLNAGALPVQMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G+VA  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVVASITLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGIS 553
            R ++  +++   + +                  ++ F L        F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVRRKDIHNLHEGINSFNLKTHFDRFDFVKHHRMFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  + A++ +  + ++ +L  + +          
Sbjct: 461 TGIVIIGIIILSVFRLNLGIDFASGTRAEISADKTLTETQIKKDLNDIGMPSDDIVFQGA 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +    V             +     +             +   V P + +EL + G + +
Sbjct: 521 DSKTAVVSYKGTLSQDDVAKFKSYFE------DKYKHEPSISTVSPTVGKELAKNGFLAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +++I +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASILIVLYIAVRFEFYMGIAAILSLLFDAFVIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T       ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRVRDISMKMQRFKTQEEIAGAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 94/258 (36%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R       +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGNFTTEEAKDLADL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +        +  VG +  ++ +++ I+  II  IA+ I++   ++    +
Sbjct: 229 LNA-----GALPVQMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+    
Sbjct: 283 VASITLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 72/730 (9%), Positives = 194/730 (26%), Gaps = 34/730 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGEGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               +      L   +   G+   S++ +  N+I +  A    +      ++   Q    
Sbjct: 58  SKQTMTDTVTALDKRINSLGVAEPSIQIEGSNRIRVQLAGVTDQAEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   +   I  +   + ++  ++ +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSTNKPIVTLKLKSADKFADVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       +++P+ L     ++   +    +  N        +  L ++      
Sbjct: 178 DWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGNFTTEEAKDLADLLNAGALPVQ 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++    S G                  V   F  M A         +I       L   
Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVVASITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNE-RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           P    +       +   I     +   +              F+              + 
Sbjct: 418 PGFFAVRRKDIHNLHEGINSFNLKTHFDRFDFVKHHRMFLSIFTGIVIIGIIILSVFRLN 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             + F  G  A      T+  + +      I +    ++F     K   +          
Sbjct: 478 LGIDFASGTRAEISADKTLTETQIKKDLNDIGMPSDDIVFQGADSKTAVVSYKGTLSQDD 537

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +    +    + +      ++  ++                    + + V     + ++ 
Sbjct: 538 VAKFKSYFEDKYKHEPSISTVSPTVGKELAKNGFLALGVASILIVLYIAVRFEFYMGIAA 597

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S L    +  I F     E +             +    +    +     + +   + 
Sbjct: 598 ILSLLFDAFVIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRVRDISMKMQRFKT 657

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704
            E +   +++ L +     +      +   + +          F     +G ++++   I
Sbjct: 658 QEEIAGAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717

Query: 705 TKTLGFFALF 714
              +  + +F
Sbjct: 718 FMAMQLWYVF 727


>gi|72160791|ref|YP_288448.1| bifunctional preprotein translocase subunit SecD/SecF [Thermobifida
           fusca YX]
 gi|71914523|gb|AAZ54425.1| protein translocase subunit secD / protein translocase subunit secF
           [Thermobifida fusca YX]
          Length = 911

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 183/935 (19%), Positives = 334/935 (35%), Gaps = 174/935 (18%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---- 60
            WL  L S++   G   A     P                 LGLDL GG+ +VLE     
Sbjct: 10  RWLRALISLLIMAGAFTAGWFLKP----------------KLGLDLSGGTQIVLETRDAE 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFL 119
           D          +  + LR+ +   G+   +  R  +N+I +     +     A+      
Sbjct: 54  DGTKANASNTDLVVEVLRNRIDSLGVSEATLSRSGENRIIVELPGVQDPTEAAEV----- 108

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L    +  +       +              +   + S E       +      
Sbjct: 109 ------LGQTAQLTIHPVLGVDQSIGTTGGGMFGDFRNAPADNSAEASDSEAQEEESPAE 162

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         +     DP  +                              L D  G 
Sbjct: 163 DEEGSEESTESGEEAEAVDPEDIA---------------------------LTLPDESGT 195

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +     ++G  ++ A A  +    + +V++ F   G   + ++T +           
Sbjct: 196 LLQLGKPA-LTGDQVDRAEATLNELQTEWLVNVEFKGAGREAWKKLTGEAACHSPGDPRR 254

Query: 300 GR--------------VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
                                  N  +  G+  I+G F  E A  LA ++  GSLP+ + 
Sbjct: 255 RIAIVLDNEIISAPEVDANDVACNVGMSGGRTSITGGFDAEEAKELALLIEGGSLPLPVE 314

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            V+ + VG  LG+++I     A + G+ L  +++ + Y   G +A  ++    ++  A L
Sbjct: 315 EVQRQTVGPTLGAEAIKASFIAGLIGIALTAIYISISYRFAGFLASVALLCYTVIAYAAL 374

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS-------- 457
             LGATLTLP +AG VL IG+A+D+N+L+ ER REE ++ + V+ +              
Sbjct: 375 VALGATLTLPGLAGFVLSIGMAIDANVLIFERTREEYQRQEKVYQANKSAGMLDATEKEQ 434

Query: 458 -----------------------------RAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
                                        RA+S + D+NIT LIA V+LFF   G V+GF
Sbjct: 435 DEAAAGVVTRRRRRAIPPNLLKSFTVGSQRAWSAVLDTNITTLIAAVLLFFLASGTVQGF 494

Query: 489 ---------AITMGLSILISMFTAISIVR------------------------------- 508
                    A  +   ++  +    ++ R                               
Sbjct: 495 GVTLGLGTIASMISALLIARVLMEWTVSRFTPLRRLWLIGAAAVVVGLVAVLSDGLRVDN 554

Query: 509 ---------------AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
                            +I +I  K  +S  I  +S             M+     +GI+
Sbjct: 555 VLLLVSGALGVLAVSVAIIPLIVRKFPRSSGIAHISAVRKWLVEHNPDLMKRSTLWLGIT 614

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            + ++ ++        N G++F GG  +       ++    R  +      +   Q  +G
Sbjct: 615 GVVTVLALLGFAVRSPNLGVEFTGGRVMTFSVTEELNADQARELVAGAGYANAVVQEVEG 674

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                   +          +    ++  + E        + E +GP +  EL  K ++ +
Sbjct: 675 G-------EISVRTGHISDQEAAKIQDALAEEGGEVERTSDEKIGPSMGSELRNKALIAL 727

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I++ +  + Y+  RF+W F L  +  L  DI   +G F   G   +   +AA+L++IG+S
Sbjct: 728 IVALVLQMAYLAWRFRWSFGLATMLALAFDIILVIGLFVWLGKPIDGVFLAALLSIIGFS 787

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           VND VVV+DR+R           FR++ + S+  TL R+V + +     +  +AV GGS 
Sbjct: 788 VNDSVVVFDRVRDEWAHKPKG-DFREIANSSVLHTLPRTVNSGIGGLFILAALAVLGGSS 846

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  F+I M  G++    S++F+A P+ +++  +  
Sbjct: 847 LTDFSIAMLVGLISGIFSTVFVAVPLAIWLQRFDR 881



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 66/215 (30%), Gaps = 35/215 (16%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             + VGP +  E I+   +  +I      IYI I +++     A   L+           
Sbjct: 317 QRQTVGPTLGAEAIKASFIAGLIGIALTAIYISISYRF-AGFLASVALLCYTVIAYAALV 375

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT------------------- 753
             G    L  +A  +  IG +++  V++++R R+  +                       
Sbjct: 376 ALGATLTLPGLAGFVLSIGMAIDANVLIFERTREEYQRQEKVYQANKSAGMLDATEKEQD 435

Query: 754 ---------------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
                            +                + T++   I+ + +       +  F 
Sbjct: 436 EAAAGVVTRRRRRAIPPNLLKSFTVGSQRAWSAVLDTNITTLIAAVLLFFLASGTVQGFG 495

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           + +  G + +  S++ IA  ++ +         R+
Sbjct: 496 VTLGLGTIASMISALLIARVLMEWTVSRFTPLRRL 530


>gi|311069250|ref|YP_003974173.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           atrophaeus 1942]
 gi|310869767|gb|ADP33242.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           atrophaeus 1942]
          Length = 739

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 198/696 (28%), Positives = 341/696 (48%), Gaps = 28/696 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D++    +  ++E + +R + +G+SE  IQ  G++RI +QL G  + +R R++L T A+
Sbjct: 53  GDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREILSTEAQ 112

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           +SF            + G   + +     Y       I  + L  A    +       V 
Sbjct: 113 LSFRDTNDK----ELLDGSDLVENGAKQTYDGTTNEPIVSVKLKDADKFGEVTKK---VL 165

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
                     + +  + +  K      + + ++AP ++Q + +    I GNF ++ A  L
Sbjct: 166 KMAPNNQLVIWMDYEKGDSFKKEVQKENPKYVSAPNVSQELNTKDVTIEGNFKVQEAKDL 225

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A++L AG+LP+KL      +VGA  G  ++ +   A + G+ LI LFM++ Y   GL+A 
Sbjct: 226 ASILNAGALPVKLTEKYSTSVGAQFGQQALNETVYAGIIGIALIFLFMLLYYRLPGLIAV 285

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ + V +TL +   + A LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +SV  +
Sbjct: 286 ITLSVYVYITLQVFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSA 345

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+++TIFD+NIT +IA VVLF FG  +V+GFA  + LSIL S  TA+ + R ++
Sbjct: 346 FRSGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFITAVFLSRFLL 405

Query: 512 IFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISILFSI 558
             ++  + +         +   I                    F   R +    S   +I
Sbjct: 406 SLLVESRWLDRKKGWFGVKKKHIMDIQKTDEYTEPYTPFEKWDFTSKRKFFFIFSSAVTI 465

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I LL    LN GIDF  G ++ V ++  +    V  +  SL +   +      + N  
Sbjct: 466 AGIILLLVFKLNLGIDFASGARIEVQSDHKLTTQQVEKDFTSLGMKPDTIVLSGEKSNIG 525

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V       D     +V +  K K           N   V P + +EL R  +  V I+++
Sbjct: 526 VARFVGVPDKETVAKVKDYFKDKYGSE------PNVSTVSPTVGKELARNALYAVAIASL 579

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF++  A+ AI +L+ D    + FF++  +E ++T +AAVLT+IGYS+ND +
Sbjct: 580 GIIIYVSIRFEYKMAIAAIVSLLYDAFFIVAFFSVTRLEVDVTFIAAVLTIIGYSINDTI 639

Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R++MK            +++ S+ +T  RSV T +   I V+ + + G + I +
Sbjct: 640 VTFDRVREHMKKRKPKTFADLNHIVNLSLQQTFTRSVNTVLTVVIVVVVLLLLGSTSITN 699

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           F+  +  G++    SS++IAA I L       K  +
Sbjct: 700 FSFALLVGLLTGVYSSLYIAAQIWLVWKGKEFKKDK 735



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/408 (12%), Positives = 114/408 (27%), Gaps = 22/408 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+       L +    + L+     +  +   +          I+LGLDL+GG  ++ +V
Sbjct: 1   MKKGR----LIAFFLFVLLIGTGLGYFTKPAAEN---------ITLGLDLQGGFEVLYDV 47

Query: 61  DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
                 D      L    + L       G+   +++ +  N+I +  A    +    + +
Sbjct: 48  KPVKKGDKITKDVLVSTVEALNRRANVLGVSEPNIQIEGNNRIRVQLAGVTNQNRAREIL 107

Query: 116 TLFLQGVNSKLNVD---PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
           +   Q      N        +L+    ++      ++  +   +  A +      +    
Sbjct: 108 STEAQLSFRDTNDKELLDGSDLVENGAKQTYDGTTNEPIVSVKLKDADKFGEVTKKVLKM 167

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
                              +   +++P  +     +    +    +  N K      +  
Sbjct: 168 APNNQLVIWMDYEKGDSFKKEVQKENPKYVSAPNVSQELNTKDVTIEGNFKVQEAKDLAS 227

Query: 233 LRDSDGNQY-LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           + ++      L E      G        N         + + F  M            I 
Sbjct: 228 ILNAGALPVKLTEKYSTSVGAQFGQQALNETVYAGIIGIALIFLFMLLYYRLPGLIAVIT 287

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             + V +  +V         +P   A I G      A I+        L +  ++     
Sbjct: 288 LSVYVYITLQVFDWMNAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAFR 347

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
            G      +I+      +   V++ +F       +  +   SI  + I
Sbjct: 348 SGNRRSFATIFDANITTIIAAVVLFIFGTSSVKGFATMLILSILTSFI 395


>gi|295094227|emb|CBK83318.1| protein translocase subunit secF/protein translocase subunit secD
           [Coprococcus sp. ART55/1]
          Length = 730

 Score =  291 bits (745), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 185/697 (26%), Positives = 338/697 (48%), Gaps = 29/697 (4%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V  +   D      +E +   I QR++    +E ++   G  +I  ++PG  +   +   
Sbjct: 51  VTYEIQEDDYSDKDLEDTKYKIEQRVEAY-TNEYSVYEDGDKKITAEIPGVTNADEILNA 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-ATANFDPK 264
           L    K+ F                             E +  ++G  +           
Sbjct: 110 LNIEGKLEFLDPDNYTKWSQGQ----------------EYEAALTGDDIKNATAGIDSDN 153

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
            +  VV ++F + GA++F +VT  N+G  + ++ D +V++AP +  AI  G A+I+   +
Sbjct: 154 GNDNVVQLAFTDEGAQKFADVTAANVGNIVYIIYDNKVVSAPTVQSAITGGSAEINKIGS 213

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  LA  +R G+LP+ L  V    VGA LGSD+I     A   G+ L+ L MI+++ 
Sbjct: 214 YEEAEQLATTIRIGALPLTLKQVRSNIVGATLGSDAISTSLKAGAIGIALVFLIMIIVFR 273

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             GLVA F++    IL L +L+L   TLTLP IAG++L +G+AVD+N+++  RI+EE   
Sbjct: 274 IPGLVASFALAFYTILDLLVLNLFNVTLTLPGIAGVILSVGMAVDANVIIFTRIKEELAD 333

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            +SV  ++  GF  A S I D N+T LIA +VL  FG G ++GFAIT+ + +++S+FTA+
Sbjct: 334 GKSVKQAVKGGFHNALSAIIDGNVTTLIAALVLGIFGTGTIKGFAITLAIGVVLSVFTAL 393

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           ++ ++++  ++      +                A +F       V I+    +      
Sbjct: 394 AVSQSLLTALVNLGVTDAKYFGVAREPKKTNFVKAGKFCMLGSLIVIIACFCMMPVNNKS 453

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL-------QIGDISFQNFDGEKNF 617
               LN+ ++F GG  L V  ++   LS    ++  +           IS Q   G    
Sbjct: 454 KGSPLNFSVEFAGGTSLTVGFDKEYSLSEAEKDIVPVIAEAAGIGEAGISVQTVSGTNEI 513

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           + ++     D    +++ ++      ++          ++   +S E+ +  I  VI++A
Sbjct: 514 VFKMPELSDDGTDDSQMSKVRSALTDKLGADVKEA--NVISGSVSSEMSKNAIFSVILAA 571

Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           I MLIYI IRF    F   A+  L+ D+      + +  +    T +A +LT++GYS+N 
Sbjct: 572 ILMLIYIAIRFHDVKFGASAVIALLHDVAMVFCLYIILRLTVGNTCIACLLTIVGYSINA 631

Query: 737 KVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            ++++DR+R+N+ +      +++D+++ SIN+T  R++YTS+  F+++  + + G + I 
Sbjct: 632 TIIIFDRVRENIGVMKPKKATYKDIVNLSINQTFSRTIYTSLTTFVTIFVLYIMGVASIK 691

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            FA+ +  G+V+ A SS+ I  P+  ++     K  +
Sbjct: 692 EFALTLMAGVVIGAYSSVCITGPLWYYMKTKLGKTEK 728



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/421 (13%), Positives = 133/421 (31%), Gaps = 27/421 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++I + +I  + +  A+     +  ++          I LGLDL+GG  +  E+ 
Sbjct: 6   RNAVLVIIAFLLILGVAIYTAIFGVADRGKVEY---------IKLGLDLKGGLSVTYEIQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           EDD+ +  L+    ++   ++              KIT         + I + + +  + 
Sbjct: 57  EDDYSDKDLEDTKYKIEQRVEAYTNEYSVYEDGDKKITAEIPGVTNADEILNALNIEGKL 116

Query: 122 VNSKLNVDPK----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                +   K    +      T  +I    +  + D    + ++ +      +      +
Sbjct: 117 EFLDPDNYTKWSQGQEYEAALTGDDIKNATAGIDSDNGNDNVVQLAFTDEGAQKFADVTA 176

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
            +    +    I+        P+    + G +A+++         +      +  L  + 
Sbjct: 177 ANVGNIVY---IIYDNKVVSAPTVQSAITGGSAEINKIGSYEEAEQLATTIRIGALPLTL 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                   +  I G  L     +   K     + + F  M           +       +
Sbjct: 234 KQV-----RSNIVGATLGSDAISTSLKAGAIGIALVFLIMIIVFRIPGLVASFALAFYTI 288

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD  VL    +   +P     I        A ++        L    ++ +    G    
Sbjct: 289 LDLLVLNLFNVTLTLPGIAGVILSVGMAVDANVIIFTRIKEELADGKSVKQAVKGGFHNA 348

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
             +I  G    +   +++ +F        G +  F+I L + + L++ + L  + +L + 
Sbjct: 349 LSAIIDGNVTTLIAALVLGIF------GTGTIKGFAITLAIGVVLSVFTALAVSQSLLTA 402

Query: 418 A 418
            
Sbjct: 403 L 403


>gi|238923392|ref|YP_002936908.1| bifunctional preprotein translocase subunit SecD/SecF [Eubacterium
           rectale ATCC 33656]
 gi|238875067|gb|ACR74774.1| bifunctional preprotein translocase subunit SecD/SecF [Eubacterium
           rectale ATCC 33656]
          Length = 790

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 183/722 (25%), Positives = 331/722 (45%), Gaps = 13/722 (1%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                  N +   D     +    +    + ++ +  D+  S           +   +  
Sbjct: 45  QKQEATANGESTKDKDYQNIKLGLDLSGGVSITYHIKDKNPSDKDVNDTIAKLEERAESY 104

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN----NSKKGFMFGVR 231
            +E ++ + G  RI +++PG  DP+++ + LG+   + F     +    N  +       
Sbjct: 105 TTEYSVYKSGDDRITVEIPGVDDPNKVLEDLGSPGSLYFIAQYDSDGNANYTQDTSAQGG 164

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPK----THKPVVDISFDEMGARRFFEVTR 287
           +  + D +       V + G  +  A+A +D      T +PVV +   +     + + T+
Sbjct: 165 YKLNYDIDTLKANGSVILDGNDVKDASAQYDQSSSTSTKEPVVSLKLKDKAIDTWADATK 224

Query: 288 DN--IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
                G+ + +  D   ++ P ++  I  G   I+G    + A  LA  +R G++ ++L 
Sbjct: 225 KAKDAGQSIGIYYDDHFISVPTVSAVISDGNCVINGMKDYDEATSLATFIRVGAINLQLE 284

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            +E   VGA LG  ++     A + G++LI++FMIVLYG  G+VA   + L  +LT+  +
Sbjct: 285 ELESNVVGAQLGGTALTNAVKAAIIGIILIMIFMIVLYGILGVVASIGLALYSMLTVLFI 344

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                TLTLP IAGI+LGIG+AVD+N++V  RIREE    +SV  +++ G+ +A S I D
Sbjct: 345 YWFEITLTLPGIAGIILGIGMAVDANVIVFARIREEIAGGKSVLAAVNEGYKKALSAILD 404

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             +T  IA +VL   G G V+GFA T+ +SI++S+FTA+ I + +               
Sbjct: 405 GQVTTFIAALVLMVLGSGTVKGFAYTLMISIILSLFTALFIAKYLTRAFYGVGVRAEKFY 464

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
               +  +I               V ++ +  +        + LNY ++F GG       
Sbjct: 465 GKAKKRKVIRFVQNRVKYFVISGVVILAGIGGMIYFGATSGNALNYSLEFVGGTSTTADF 524

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +    + V  ++       +                     +++     ++      + 
Sbjct: 525 GKDYTAAEVEKDIVPSVSKLLGNSAVQVTTVQGSHDVTLKTRTLSLDERQDLAALLEKDF 584

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
              ++   T+ +   IS E+    +  VIIS I ML+YIW RFK   FA  AI  L+ D+
Sbjct: 585 NVDASTIETQSISSTISGEMRTNAVKAVIISCIFMLLYIWFRFKDIRFASSAILALVHDV 644

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLID 762
              +  +AL  I    T +A +LT++GYSVND +V++DR+R+N+       +    D+ +
Sbjct: 645 LVVVTAYALIRISVGSTFIACILTIVGYSVNDTIVIFDRIRENLHGIKKYSADELADIAN 704

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +S+ +TL RS+ TS+  F+ VL + ++G + I  F++P+  G++    SSI IA  +   
Sbjct: 705 ESLTQTLSRSINTSLTTFVMVLLLFIFGHTSIREFSLPLMVGVLCGTYSSICIATELWYV 764

Query: 823 IY 824
           + 
Sbjct: 765 MK 766



 Score = 96.3 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 83/210 (39%), Gaps = 4/210 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G              ++  I        + +VG ++    +   +   II  I ++I
Sbjct: 257 VINGMKDYDEATSLATFIRVGAINLQLEELESNVVGAQLGGTALTNAVKAAIIGIILIMI 316

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + +     + A   L L    T+ F   F I   L  +A ++  IG +V+  V+V+ 
Sbjct: 317 FMIVLYGI-LGVVASIGLALYSMLTVLFIYWFEITLTLPGIAGIILGIGMAVDANVIVFA 375

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +       S    +++   + L   +   +  FI+ L + V G   +  FA  + 
Sbjct: 376 RIREEIAG---GKSVLAAVNEGYKKALSAILDGQVTTFIAALVLMVLGSGTVKGFAYTLM 432

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             I+++  +++FIA  +    Y    +  +
Sbjct: 433 ISIILSLFTALFIAKYLTRAFYGVGVRAEK 462


>gi|291525480|emb|CBK91067.1| protein translocase subunit secF/protein translocase subunit secD
           [Eubacterium rectale DSM 17629]
 gi|291528411|emb|CBK93997.1| protein translocase subunit secF/protein translocase subunit secD
           [Eubacterium rectale M104/1]
          Length = 785

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 183/722 (25%), Positives = 331/722 (45%), Gaps = 13/722 (1%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                  N +   D     +    +    + ++ +  D+  S           +   +  
Sbjct: 40  QKQEATANGESTKDKDYQNIKLGLDLSGGVSITYHIKDKNPSDKDVNDTIAKLEERAESY 99

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN----NSKKGFMFGVR 231
            +E ++ + G  RI +++PG  DP+++ + LG+   + F     +    N  +       
Sbjct: 100 TTEYSVYKSGDDRITVEIPGVDDPNKVLEDLGSPGSLYFIAQYDSDGNANYTQDTSVEGG 159

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPK----THKPVVDISFDEMGARRFFEVTR 287
           +  + D +       V + G  +  A+A +D      T +PVV +   +     + + T+
Sbjct: 160 YKLNYDIDTLKANGSVILDGNDVKDASAQYDQSSSTSTKEPVVSLKLKDKAIDTWADATK 219

Query: 288 DN--IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
                G+ + +  D   ++ P ++  I  G   I+G    + A  LA  +R G++ ++L 
Sbjct: 220 KAKDAGQSIGIYYDDHFISVPTVSAVISDGNCVINGMKDYDEATSLATFIRVGAINLQLE 279

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            +E   VGA LG  ++     A + G++LI++FMIVLYG  G+VA   + L  +LT+  +
Sbjct: 280 ELESNVVGAQLGGTALTNAVKAAIIGIILIMIFMIVLYGILGVVASIGLALYSMLTVLFI 339

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                TLTLP IAGI+LGIG+AVD+N++V  RIREE    +SV  +++ G+ +A S I D
Sbjct: 340 YWFEITLTLPGIAGIILGIGMAVDANVIVFARIREEIAGGKSVLAAVNEGYKKALSAILD 399

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             +T  IA +VL   G G V+GFA T+ +SI++S+FTA+ I + +               
Sbjct: 400 GQVTTFIAALVLMVLGSGTVKGFAYTLMISIILSLFTALFIAKYLTRAFYGVGVRAEKFY 459

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
               +  +I               V ++ +  +        + LNY ++F GG       
Sbjct: 460 GKAKKRKVIRFVQNRVKYFVISGVVILAGIGGMIYFGATSGNALNYSLEFVGGTSTTADF 519

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +    + V  ++       +                     +++     ++      + 
Sbjct: 520 GKDYTAAEVEKDIVPSVSKLLGNSAVQVTTVQGSHDVTLKTRTLSLDERQDLAALLEKDF 579

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
              ++   T+ +   IS E+    +  VIIS I ML+YIW RFK   FA  AI  L+ D+
Sbjct: 580 NVDASTIETQSISSTISGEMRTNAVKAVIISCIFMLLYIWFRFKDIRFASSAILALVHDV 639

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLID 762
              +  +AL  I    T +A +LT++GYSVND +V++DR+R+N+       +    D+ +
Sbjct: 640 LVVVTAYALIRISVGSTFIACILTIVGYSVNDTIVIFDRIRENLHGIKKYSADELADIAN 699

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +S+ +TL RS+ TS+  F+ VL + ++G + I  F++P+  G++    SSI IA  +   
Sbjct: 700 ESLTQTLSRSINTSLTTFVMVLLLFIFGHTSIREFSLPLMVGVLCGTYSSICIATELWYV 759

Query: 823 IY 824
           + 
Sbjct: 760 MK 761



 Score = 96.3 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/210 (18%), Positives = 83/210 (39%), Gaps = 4/210 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G              ++  I        + +VG ++    +   +   II  I ++I
Sbjct: 252 VINGMKDYDEATSLATFIRVGAINLQLEELESNVVGAQLGGTALTNAVKAAIIGIILIMI 311

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + +     + A   L L    T+ F   F I   L  +A ++  IG +V+  V+V+ 
Sbjct: 312 FMIVLYGI-LGVVASIGLALYSMLTVLFIYWFEITLTLPGIAGIILGIGMAVDANVIVFA 370

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +       S    +++   + L   +   +  FI+ L + V G   +  FA  + 
Sbjct: 371 RIREEIAG---GKSVLAAVNEGYKKALSAILDGQVTTFIAALVLMVLGSGTVKGFAYTLM 427

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             I+++  +++FIA  +    Y    +  +
Sbjct: 428 ISIILSLFTALFIAKYLTRAFYGVGVRAEK 457



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 8/125 (6%)

Query: 1   MRNNP-WLVILYSMIC--CIGLLIALPNFLPQSMLDRFPSAMPKN-----RISLGLDLRG 52
           M+    W++IL ++IC   +G          +   +   +           I LGLDL G
Sbjct: 8   MKKGKSWVIILVAVICIGLLGWYSTAVITDTKQKQEATANGESTKDKDYQNIKLGLDLSG 67

Query: 53  GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA 112
           G  +   + + +  +  +     +L    +         +   ++IT+          + 
Sbjct: 68  GVSITYHIKDKNPSDKDVNDTIAKLEERAESYTTEYSVYKSGDDRITVEIPGVDDPNKVL 127

Query: 113 DKVTL 117
           + +  
Sbjct: 128 EDLGS 132


>gi|260437939|ref|ZP_05791755.1| putative protein-export membrane protein SecDF [Butyrivibrio
           crossotus DSM 2876]
 gi|292809690|gb|EFF68895.1| putative protein-export membrane protein SecDF [Butyrivibrio
           crossotus DSM 2876]
          Length = 758

 Score =  291 bits (744), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 203/706 (28%), Positives = 336/706 (47%), Gaps = 23/706 (3%)

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S          + + +  + +          + + + GS+R+ I++PG  D   + + L
Sbjct: 49  VSVTYQAVGEVSSQDMNDVVYKMVKRVEEYDGAQVYKEGSNRVTIEIPGADDAQTILEEL 108

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV------------EDKVEISGIHL 254
           G    + F     ++ K    +  ++  D+ GN  LV            +  + ++G  +
Sbjct: 109 GKPGALYFINQYASDDKTAN-YTSQYAVDASGNLALVTKLNKTLDEIKADGTIILTGEDI 167

Query: 255 NGATANFDPKT---HKPVVDISFDEMGARRFFEVTRDNIGKPLAV--VLDGRVLTAPVIN 309
             A   +   +    + VV  +  E GA +F E T     K  ++    DG  ++ P +N
Sbjct: 168 KDAQGVYQQNSSGSKQAVVSFALTEEGAAKFKEATTKAASKKWSIGVYYDGEFISVPKVN 227

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
            AI  G+  I G   IE A  LA+ +R G+LP++L  V  + VGA LG ++I     A +
Sbjct: 228 SAITDGEGVIEGMADIEEAKNLASAIRIGALPVELEEVSSQVVGATLGQEAISTSVKAGI 287

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
            G VL+ +FMI  Y   GL A+F++       L +L++   TLTLP IAGI+LGIG+AVD
Sbjct: 288 IGFVLLFIFMIAYYKIPGLAANFALIAYTAGMLLILNVFNFTLTLPGIAGIILGIGMAVD 347

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +N+++N RI EE  +  SV  ++  GF +A S I D N+T LIA +VL   G G V+GFA
Sbjct: 348 ANVIINARISEELARGVSVRSAIATGFKKALSAIIDGNVTTLIAAIVLGIIGSGPVKGFA 407

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +T+G+ I +SMFT++ + R +++ +      K            +      +   +    
Sbjct: 408 LTLGIGIALSMFTSLVVARWVLLLLYHLGCNKEKMYGIHKERASVNFVSKRKIFISISAL 467

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI--- 606
           V  + +       +      N  ++F GG    V  ++   L  V   +           
Sbjct: 468 VIATGVAFATINGVKGNGSFNLDLEFSGGTSTTVNFDKEYTLDEVEKEIIPEIKKATGLS 527

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           + Q    +    V  + +      Q     ++K K    V      ++E +   IS E+ 
Sbjct: 528 TVQQQAVKGTNQVIFKTKWLTEKQQNSFYSLLKDKYNVDVTNPDKLSSEKISATISSEMR 587

Query: 667 RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           R  I+ VI++ I MLIYIWIRF+   FA  AI  LI D+   + F+ +  I    T +A 
Sbjct: 588 RDAIIAVIVATICMLIYIWIRFRDVKFATSAIIALIHDVLIVITFYIISRIPVGNTFIAC 647

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +LT++GYS+N  +V++DR+R+NMK+ T S +  ++++ SI  TL RS+ TS+  FI VL 
Sbjct: 648 MLTIVGYSINATIVIFDRIRENMKIMTKS-TLSEVVNSSITSTLSRSINTSLTTFIMVLM 706

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + + G S I  FA P+  GI+    SS+ I   +   +     K A
Sbjct: 707 LYILGVSSIREFAAPIMVGILAGGYSSVCITGALWFMMKKSSYKRA 752



 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 36/181 (19%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           ++++VG  + +E I   +   II  + + I++   +K    L A   LI      L    
Sbjct: 266 SSQVVGATLGQEAISTSVKAGIIGFVLLFIFMIAYYKIP-GLAANFALIAYTAGMLLILN 324

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           +F     L  +A ++  IG +V+  V++  R+ + +      +S R  I     + L   
Sbjct: 325 VFNFTLTLPGIAGIILGIGMAVDANVIINARISEELA---RGVSVRSAIATGFKKALSAI 381

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+ + + + G   +  FA+ +  GI ++  +S+ +A  +LL +Y       +
Sbjct: 382 IDGNVTTLIAAIVLGIIGSGPVKGFALTLGIGIALSMFTSLVVARWVLLLLYHLGCNKEK 441

Query: 833 I 833
           +
Sbjct: 442 M 442


>gi|163814894|ref|ZP_02206282.1| hypothetical protein COPEUT_01045 [Coprococcus eutactus ATCC 27759]
 gi|158449833|gb|EDP26828.1| hypothetical protein COPEUT_01045 [Coprococcus eutactus ATCC 27759]
          Length = 732

 Score =  291 bits (743), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 183/695 (26%), Positives = 335/695 (48%), Gaps = 25/695 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V  +   D      +E +   I +R++    +E ++   G  +I  ++PG  +   + + 
Sbjct: 51  VTYEIQEDDYSDKDLEDTKYKIEKRVEAY-TNEYSVYEDGDKKITAEIPGVTNADEILEA 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-ATANFDPK 264
           L    K+ F                             E +  ++G  +           
Sbjct: 110 LNIEGKLEFLDPDNYTKWSQGQ----------------EYEAALTGDDIKNATAGIDSDN 153

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
            +  VV ++F + GA++F +VT  N+GK + ++ D +V++AP +  AI  G A+I+   +
Sbjct: 154 GNDNVVQLAFTDEGAQKFADVTAANVGKVVYIIYDNKVVSAPTVQSAITGGSAEINKIGS 213

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  LA  +R G+LP+ L  V    VGA LGSD+I     A   G+ L+ L MI+++ 
Sbjct: 214 YEEAEQLATTIRIGALPLTLKQVRSNIVGATLGSDAISTSLKAGAIGIALVFLIMIIVFR 273

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             GLVA F++    IL L +++L   TLTLP IAG++L +G+AVD+N+++  RI+EE   
Sbjct: 274 IPGLVASFALAFYTILDLLVINLFNVTLTLPGIAGVILSVGMAVDANVIIFTRIKEELAD 333

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            +SV  ++  GF  A S I D N+T LIA +VL  FG G ++GFAIT+ + +++S+FTA+
Sbjct: 334 GKSVKQAVKGGFHNALSAIIDGNVTTLIAALVLGIFGTGTIKGFAITLAIGVVLSVFTAL 393

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           ++ ++++  ++      +                A +F       V I+    +      
Sbjct: 394 AVSQSLLTALVNLGVADAKYFGVAREPKKTNFVKAGKFCMLGSLIVIIACFCMMPVNNKS 453

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL-----ESLQIGDISFQNFDGEKNFLV 619
               LN+ ++F GG  L V  ++   LS   S++     E+  IG+             +
Sbjct: 454 KGSPLNFSVEFAGGTSLTVGFDKEYSLSEAESDIVPVIAEAAGIGEAGISVQTVSGTNEI 513

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             +                 +        + ++   ++   +S E+ +  I  VI++AI 
Sbjct: 514 VFKMPELSDDGTDDSQMSKVRAALTDKLGADVKEANVISGSVSSEMSKNAIFSVILAAIL 573

Query: 680 MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           MLIYI IRF    F   A+  L+ D+      + +  +    T +A +LT++GYS+N  +
Sbjct: 574 MLIYIAIRFHDVKFGASAVIALLHDVAMVFCLYIILRLTVGNTCIACLLTIVGYSINATI 633

Query: 739 VVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +++DR+R+N+ +      +++D+++ SIN+T  R++YTS+  F+++  + + G + I  F
Sbjct: 634 IIFDRIRENIDIMRPKKATYKDIVNLSINQTFSRTIYTSLTTFVTIFVLYIMGVASIKEF 693

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           A+ +  GI++ A SS+ I  P+   +     K  +
Sbjct: 694 ALTLMAGIIIGAYSSVCITGPLWYTMKTKLGKARK 728



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/421 (12%), Positives = 134/421 (31%), Gaps = 27/421 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++I + ++  + +  A+     +  ++          I LGLDL+GG  +  E+ 
Sbjct: 6   RNAVLVIIAFLLVLGVAIYTAIFGVADRGKVEY---------IKLGLDLKGGLSVTYEIQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           EDD+ +  L+    ++   ++              KIT         + I + + +  + 
Sbjct: 57  EDDYSDKDLEDTKYKIEKRVEAYTNEYSVYEDGDKKITAEIPGVTNADEILEALNIEGKL 116

Query: 122 VNSKLNVDPK----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                +   K    +      T  +I    +  + D    + ++ +      +      +
Sbjct: 117 EFLDPDNYTKWSQGQEYEAALTGDDIKNATAGIDSDNGNDNVVQLAFTDEGAQKFADVTA 176

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
            +  + +    I+        P+    + G +A+++         +      +  L  + 
Sbjct: 177 ANVGKVVY---IIYDNKVVSAPTVQSAITGGSAEINKIGSYEEAEQLATTIRIGALPLTL 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                   +  I G  L     +   K     + + F  M           +       +
Sbjct: 234 KQV-----RSNIVGATLGSDAISTSLKAGAIGIALVFLIMIIVFRIPGLVASFALAFYTI 288

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD  V+    +   +P     I        A ++        L    ++ +    G    
Sbjct: 289 LDLLVINLFNVTLTLPGIAGVILSVGMAVDANVIIFTRIKEELADGKSVKQAVKGGFHNA 348

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
             +I  G    +   +++ +F        G +  F+I L + + L++ + L  + +L + 
Sbjct: 349 LSAIIDGNVTTLIAALVLGIF------GTGTIKGFAITLAIGVVLSVFTALAVSQSLLTA 402

Query: 418 A 418
            
Sbjct: 403 L 403


>gi|315303287|ref|ZP_07873922.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           ivanovii FSL F6-596]
 gi|313628334|gb|EFR96832.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           ivanovii FSL F6-596]
          Length = 754

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 189/701 (26%), Positives = 338/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +RI+ +G++E +IQ  G +RI +QL G  D    R++L T
Sbjct: 51  ADGEGTVSKQTMTDTVTALDKRINSLGVAEPSIQIEGKNRIRVQLAGVTDQEEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N+ +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNKPIVTLKLKSADKFADVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  + N             L+AP ++  + + K +ISGNFT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKKNPA----------YLSAPNVSSVLDTDKVEISGNFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L AG+LP+++  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLADLLNAGALPVQMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G++A  ++     L L +LSLL ATLTLP IAG++LG+G+AVD+N++  ERI+EE +  +
Sbjct: 281 GVIASITLVAYTYLVLLILSLLHATLTLPGIAGLILGVGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGIS 553
            R ++  +++   + +                  ++ F L        F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVRRKDIHNLHEGINSFNLKTHFDRFDFVKHHRLFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  + A+  +  + ++ +L+S+ +          
Sbjct: 461 TGIVIIGIVILSIFRLNLGIDFASGTRAEITADHTLTETQIKKDLDSIGMPSDDIVFQGS 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             +                   +   V P + +EL + G   +
Sbjct: 521 GSKTAVVSYKGTLSQDDVAKFKNYF------DDKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I++I +++YI IRF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GIASILIVLYIAIRFEFYMGIAAILSLLFDAFIIFIFFSITRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     D ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735



 Score =  107 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 94/258 (36%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R       +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGNFTTEEAKDLADL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +        +  VG +  ++ +++ I+  II  IA+ I++   ++    +
Sbjct: 229 LNA-----GALPVQMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  +G +V+  V+ Y+R+++ +K+    
Sbjct: 283 IASITLVAYTYLVLLILSLLHATLTLPGIAGLILGVGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 80/730 (10%), Positives = 193/730 (26%), Gaps = 34/730 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGEGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
               +      L   +   G+   S++    N+I +  A    +E     ++   Q    
Sbjct: 58  SKQTMTDTVTALDKRINSLGVAEPSIQIEGKNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S   I  +   + ++  ++ +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNKPIVTLKLKSADKFADVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       +++P+ L     ++   +    +  N        +  L ++      
Sbjct: 178 DWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGNFTTEEAKDLADLLNAGALPVQ 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++    S G                  V   F  M A         +I       L   
Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIASITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLHATLTLPGIAGLILGVGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAGVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P    +       +   I         +R +      L +        I    ++     
Sbjct: 418 PGFFAVRRKDIHNLHEGINSFNLKTHFDRFDFVKHHRLFLSIFTGIVIIGIVILSIFRLN 477

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           + + F  G      A        I        + +  I         ++     +     
Sbjct: 478 LGIDFASGTRAEITADHTLTETQIKKDLDSIGMPSDDIVFQGSGSKTAVVSYKGTLSQDD 537

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ-LGVLANRPVDLSV 593
                  F         IS +       L        GI     +  + +     + ++ 
Sbjct: 538 VAKFKNYFDDKYKHEPSISTVSPTVGKELAKNGFWALGIASILIVLYIAIRFEFYMGIAA 597

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S L    I  I F     E +             +    +    +     + +   + 
Sbjct: 598 ILSLLFDAFIIFIFFSITRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704
            E +   +++ L +     +      +   + +          F     +G ++++   I
Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717

Query: 705 TKTLGFFALF 714
              +  + +F
Sbjct: 718 FMAMQLWYVF 727


>gi|154505889|ref|ZP_02042627.1| hypothetical protein RUMGNA_03431 [Ruminococcus gnavus ATCC 29149]
 gi|153793907|gb|EDN76327.1| hypothetical protein RUMGNA_03431 [Ruminococcus gnavus ATCC 29149]
          Length = 728

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 167/696 (23%), Positives = 305/696 (43%), Gaps = 48/696 (6%)

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ------DPSRLRQLL 206
            +  +  +E   E+I  R+D   I +  +        +I     +      DP    Q L
Sbjct: 57  KKPTAEQLEMVREVIETRLDSQNILDREVTVDEKAGDVIVRFPWKSDEKNFDPETAIQEL 116

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G  A+++F         KG       +       Y+VE                      
Sbjct: 117 GEMAELTFRGPDNTVYIKGSDVSRSQVAVDQQKNYVVE---------------------- 154

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                + F   GA++F + T   +G+ + + +D  +++ P +N  I  GKA+I+G  + E
Sbjct: 155 -----LEFSSEGAKKFADATEKLVGQQMGIYMDDDLISNPTVNAKITGGKAEITGMSSKE 209

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  L+  + +GSLP  +       +   LG  ++     A    + LI LFMI+ Y   
Sbjct: 210 EAQSLSDKINSGSLPFSMKTTNYSTISPTLGGKALNAMALAAEIAMALICLFMIIWYRLP 269

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G+++  ++   + L + ++S+   T+TLP IAG++L  G+AVD+NI+++ERI EE +K  
Sbjct: 270 GVISCLTLTFQIALQILVISVPQYTITLPGIAGLILSAGMAVDANIIISERISEELKKGN 329

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           SV  ++  G+ RA+S++ D N+T      +L  FG G +  F  T+   ++I++   + +
Sbjct: 330 SVRNAVKNGYKRAFSSVLDGNVTTAAVAGILMIFGSGTMLSFGYTLLTGVIINLLAGVWM 389

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
            R M+  +IRYK       N    F    D   ++F  A+ +    S+   +        
Sbjct: 390 SRYMLNSVIRYKL-----FNQEKWFRKKKDKKILKFAEAKKYFFLTSVALLLTGTIWSCV 444

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFLVRLQYQ 624
           +G+     F GG+ L        D   ++  +E +    +S Q  +        + +   
Sbjct: 445 NGMKLDTQFTGGVILRYTYTGKADTGQIQKEVEDIVDRSVSVQTSENSATGEKSLVITLS 504

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
               +   +  E++               T  V P I  + ++   + +++S + +++YI
Sbjct: 505 GKKGLTPEQQKEILNTINQGNKNQFETSETSAVEPYIGAKALKNSAIAIVLSFLFIVVYI 564

Query: 685 WIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            +RF         + A+  L+ DI   L  F +F I  N   VA  LT+IGYS+ND +V+
Sbjct: 565 RLRFSALGGLASGVTAVIALVHDILIVLFIFGIFRIPVNDAFVAVTLTIIGYSINDTIVL 624

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGS 796
           YDR+R++        +  +L+D S  ETL RS+ T+    +    + V         I +
Sbjct: 625 YDRIREHRSNMKKKSTLAELVDISTTETLQRSINTAFTVVLCAFIIFVVSVVYRMESITN 684

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           F++P+  G++    SSI IA P+ ++  + R K  +
Sbjct: 685 FSLPLLAGLISGCYSSICIAGPLWVWWEEHREKIQK 720



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/400 (10%), Positives = 105/400 (26%), Gaps = 28/400 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+N    + +   +    + IA+                    +  G+D+RGG   V E 
Sbjct: 1   MKNKKLHIWIALAVIVFFVCIAVFGCGE--------DIKGIRDMRFGIDIRGGVEAVFEP 52

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFAD-----SRFKENI 111
                      L+M  + + + L  + I     ++ +    + + F       +   E  
Sbjct: 53  SGLKKKPTAEQLEMVREVIETRLDSQNILDREVTVDEKAGDVIVRFPWKSDEKNFDPETA 112

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++    +      +              ++S      +  +     +E S E  ++  
Sbjct: 113 IQELGEMAELTFRGPDNTVY------IKGSDVSRSQVAVDQQKNYVVELEFSSEGAKKFA 166

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           D                I +      +P+   ++ G  A+++                  
Sbjct: 167 DATEKL-----VGQQMGIYMDDDLISNPTVNAKITGGKAEITGMSSKEEAQSLSDKINSG 221

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
            L  S            + G  LN      +       + +            +T     
Sbjct: 222 SLPFSMKTTNYSTISPTLGGKALNAMALAAEIAMALICLFMIIWYRLPGVISCLTLTFQI 281

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
               +V+     T  +   A     A ++ +  I  +  ++  L+ G+          + 
Sbjct: 282 ALQILVISVPQYTITLPGIAGLILSAGMAVDANIIISERISEELKKGNSVRNAVKNGYKR 341

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
             + +   ++     A +  +      +   Y     V  
Sbjct: 342 AFSSVLDGNVTTAAVAGILMIFGSGTMLSFGYTLLTGVII 381


>gi|291549198|emb|CBL25460.1| protein translocase subunit secF/protein translocase subunit secD
           [Ruminococcus torques L2-14]
          Length = 802

 Score =  290 bits (742), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 193/702 (27%), Positives = 344/702 (49%), Gaps = 21/702 (2%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   D+     ++ ++  +++R++Q    E+   ++G +RI I++PG  D +++ + 
Sbjct: 51  ITYQVKGDKPSQADMDDTVYKLQKRVEQYST-EAQAYQVGDNRISIEIPGVSDANKILEE 109

Query: 206 LGTTAKMSFHK-VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA----N 260
           LG    + F K      ++   +    +  +   ++    D + ++G  +  A+A    +
Sbjct: 110 LGQPGSLYFIKHKDSEGNENYSLTASGYTLNKSIDELKDTDSIVLTGTEVKTASAGALND 169

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRD---NIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                 K  VD+   + GA +F   T +   N    +A+  DG +++ P +N  I +GKA
Sbjct: 170 STTGNKKYGVDLELTDEGAEKFKTATEEAYNNNNDTIAIYYDGALISVPKVNAVIENGKA 229

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QISGN   E A  +A+ +R G L ++L  +    VGA LG D++     A + GL ++ +
Sbjct: 230 QISGNMDYEEADNIASTIRIGGLNLELEELSSEVVGAQLGQDALKGSLIAGIIGLAIVCV 289

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FM  +Y   GL +  ++ L   L L LL+    TLTLP IAGI+LGIG+AVD+N+++  R
Sbjct: 290 FMCWVYLLPGLASSLALILYTELILILLNAFDITLTLPGIAGIILGIGMAVDANVIIFAR 349

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           ++EE    +SV  SL  GF +A S I D NIT LIA  VL+  G G V+GFA T+ L I+
Sbjct: 350 VKEELTAGKSVHASLKSGFQKAMSAIVDGNITTLIAAGVLWLRGSGTVKGFAQTLALGIV 409

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +SMFTA+ I R ++                  +         + F+  +     +SI+  
Sbjct: 410 VSMFTALVITRLIIFAFYGAGIRNEKVYGRHLKERKP-----VDFLGKKKIFFIVSIILC 464

Query: 558 ICSICLLFTHG------LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
           +    ++  +       +NY +DF GG    V  ++   L  + S +          +N 
Sbjct: 465 LAGPVMMGVNHARGIGAMNYSLDFVGGTSTNVTFDKEYTLEEIDSQMIPSLEEITGDKNI 524

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
             +             ++   +   +           ++   TE +   +S E+ R  ++
Sbjct: 525 QVQTVKDSNQVVFKTQTLDLEKREALASYLNENYGVEASDIATENISSTVSSEMRRDAVI 584

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            VII+ I ML+YIW RFK   FA  A+  L+ D+   LGF+ +  +    T +A +LT++
Sbjct: 585 AVIIATICMLLYIWFRFKDIRFATSAVVALMHDVLVVLGFYVIARVSVGNTFIACMLTIV 644

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           GYS+N  +V++DR+R+ +   + +   +DL+++ I +TL R++YT+   F+ V+ + + G
Sbjct: 645 GYSINGTIVIFDRIREALATKSRTEDLKDLVNRCITQTLTRTIYTNFTTFVMVVALYILG 704

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S I  FA P+  GI+    +S+ I   +   +     + A+
Sbjct: 705 VSSIKEFAAPLMVGIICGGYTSVCITGALWYVMKTRLGEEAK 746



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 87/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G+   +         +I  +       ++E+VG ++ ++ ++  ++  II    + +++
Sbjct: 232 SGNMDYEEADNIASTIRIGGLNLELEELSSEVVGAQLGQDALKGSLIAGIIGLAIVCVFM 291

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +     L +   LIL     L     F I   L  +A ++  IG +V+  V+++ R+
Sbjct: 292 CWVY-LLPGLASSLALILYTELILILLNAFDITLTLPGIAGIILGIGMAVDANVIIFARV 350

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           ++ +       S    +     + +   V  ++   I+   + + G   +  FA  +A G
Sbjct: 351 KEELTA---GKSVHASLKSGFQKAMSAIVDGNITTLIAAGVLWLRGSGTVKGFAQTLALG 407

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           IVV+  +++ I   I+   Y    +N ++
Sbjct: 408 IVVSMFTALVITRLIIFAFYGAGIRNEKV 436


>gi|269303439|gb|ACZ33539.1| protein-export membrane protein SecDF [Chlamydophila pneumoniae
            LPCoLN]
          Length = 1402

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 176/835 (21%), Positives = 334/835 (40%), Gaps = 52/835 (6%)

Query: 41   KNRISLGLDLRGGSHLVLEV---DEDDFV-NGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96
            +N + LG+D  GG  L+L               +   SDEL + L K G+    +R+  +
Sbjct: 576  ENILRLGIDFVGGRQLLLSFKDHQGKQLTDKEDILKVSDELYARLNKLGVSEIELRREGD 635

Query: 97   KITLSFADSRFKENIADK---------VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
             I LS   S    +             V       ++    + ++ L       +     
Sbjct: 636  YIHLSVPGSSTISSSEILRTSKMSFHVVNERFSSYSASRY-EVQRFLDYLWFTSQAQGKT 694

Query: 148  SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
            S   I+   S    + +++     + I   +S                      +  +  
Sbjct: 695  SPEEINTFASALFNKEVDVPPSVHEAITKLKSEGLAFSPSGCETPSTDLDTTFSMIAIGK 754

Query: 208  TTAKMSFHKVL--PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
               + +   V+   N +  G          + G  Y++   V+ +         +     
Sbjct: 755  DAEQKANPLVIVFRNYALDGASLKDIRPEFAAGEGYVLNFSVKDTSPKKMAEKLSPTESF 814

Query: 266  HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            H         + G                  V+    + +  I        A +SG FT 
Sbjct: 815  HTWTSAYC--QEGISGTANGQYSANRGWRMAVVIDGYMVSSPILNVPLKNHASVSGKFTH 872

Query: 326  ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                 LA+ L++G++     ++ E  + +DLG     +G  +   GL ++++ M V Y  
Sbjct: 873  REVSKLASDLKSGAMSFVPEVLSEETISSDLGKKQCTQGIISACCGLAMLIVLMSVYYRF 932

Query: 386  WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             G++A  ++ LN++L  A L  L A LTL  +AGIVL +G+AVD+N+LV ERIREE   +
Sbjct: 933  GGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEFLLS 992

Query: 446  QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            QS+  S++ G+++A+  IFDSN+T ++A+ +LFF   G ++GFA+T+ L I  SMFTA+ 
Sbjct: 993  QSLKKSVEKGYTKAFGAIFDSNLTTVLASALLFFLDTGPIKGFALTLILGIFSSMFTALF 1052

Query: 506  IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
            + +   +  +   +   + +                    + W V  S+    C      
Sbjct: 1053 MTKFFFMLWMNKTQHTQLHMMNKFVGIKHDFLGGC----KKLWAVSGSVFLLGCVALGFG 1108

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLS-----------------VVRSNLESLQIGDISF 608
                  G+DFKGG                                 R             
Sbjct: 1109 AWNSVLGMDFKGGYAFTFNPKEHGISDVAQMRGKVVHKLQEAGLSSRDFRIQTFGSSEKI 1168

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGPKI 661
            + +  +K                   L +    ++E     + +           V  K+
Sbjct: 1169 KIYFSDKALSYTKADTSLSPKINDHELALAVGLLSETGLDFSTETLNETQNFWSKVSSKL 1228

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG-----I 716
            S+++  +  +G++ +   +L+Y+ +RF+W +A  A+  LI D+  T     +       I
Sbjct: 1229 SKKMRYQATIGLLGALAIILLYVSLRFEWQYAFSAVCALIHDLLATCAVLFIAHFFLKKI 1288

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + +L A+ A++T++GYS+N+ ++++DR+R++ +    +     L++ ++ +T  R+V T+
Sbjct: 1289 QIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQANLFT-PMHVLVNDALQKTFSRTVMTT 1347

Query: 777  MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  +L +   GGS + +FA  M  GI++   SS++IA P+LLF+     ++ 
Sbjct: 1348 ATTLSVLLMLLFIGGSSVFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKENRSK 1402


>gi|290893885|ref|ZP_06556863.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes FSL J2-071]
 gi|290556602|gb|EFD90138.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes FSL J2-071]
          Length = 754

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 186/701 (26%), Positives = 338/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +RI+ +G++E +IQ  G +RI +QL G  D    R++L T
Sbjct: 51  ADGKGTVSKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N  +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  +           D   L+AP ++  + + K +ISG+FT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G++A  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553
            R ++  +++   + +       +   I                    F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+++ +          
Sbjct: 461 AAIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGS 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +    V             +     +             +   V P + +EL + G   +
Sbjct: 521 DSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     D ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRRK 735



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R   +   +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +        +  VG +  ++ +++ I+  II  +A+ I++   ++    +
Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+    
Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 81/730 (11%), Positives = 199/730 (27%), Gaps = 34/730 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               L      L   +   G+   S++ +  N+I +  A    +E     ++   Q    
Sbjct: 58  SKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S N I  +   + ++   + +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       ++DP+ L     ++   +    +  +        +  L +S      
Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++    S G                  V   F  M A          I       L   
Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473
           P    +       +   I         +R +      L +    A   +    ++   + 
Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFKLN 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             + F  G  A      T+  + +     AI +    ++F     K   +          
Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGSDSKTAVVSYKGTLSQND 537

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +         + +      ++  ++                    + + V     + ++ 
Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S L    I  I F     E +             +    +    +     + +   + 
Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704
            E +   +++ L +     +      +   + +          F     +G ++++   I
Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717

Query: 705 TKTLGFFALF 714
              +  + +F
Sbjct: 718 FMAMQLWYVF 727


>gi|15618475|ref|NP_224760.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila
            pneumoniae CWL029]
 gi|15836095|ref|NP_300619.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila
            pneumoniae J138]
 gi|16752475|ref|NP_444737.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila
            pneumoniae AR39]
 gi|33241917|ref|NP_876858.1| bifunctional preprotein translocase subunit SecD/SecF [Chlamydophila
            pneumoniae TW-183]
 gi|4376857|gb|AAD18704.1| SecD/SecF fusion protein [Chlamydophila pneumoniae CWL029]
 gi|7189116|gb|AAF38059.1| secDF protein, putative [Chlamydophila pneumoniae AR39]
 gi|8978935|dbj|BAA98770.1| protein export [Chlamydophila pneumoniae J138]
 gi|33236427|gb|AAP98515.1| SecDF [Chlamydophila pneumoniae TW-183]
          Length = 1402

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 176/837 (21%), Positives = 334/837 (39%), Gaps = 56/837 (6%)

Query: 41   KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR------SFLKKEGIGVFSMRQI 94
            +N + LG+D  GG  L+L     D     L    D L+      + L K G+    +R+ 
Sbjct: 576  ENILRLGIDFVGGRQLLL--SFKDHQGKQLTDKEDILKVSDELCARLNKLGVSEIELRRE 633

Query: 95   QNKITLSFADSRFKENIADK---------VTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
             + I LS   S    +             V       ++    + ++ L       +   
Sbjct: 634  GDYIHLSVPGSSTISSSEILGTSKMSFHVVNERFSSYSASRY-EVQRFLDYLWFTSQAQG 692

Query: 146  VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
              S   I+   S    + +++     + I   +S                      +  +
Sbjct: 693  KTSPEEINTFASALFNEEVDVPPSVHEAITKLKSEGLAFSPSGCETPSTDLDTTFSMIAI 752

Query: 206  LGTTAKMSFHKVL--PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
                 + +   V+   N +  G          + G  Y++   V+ +         +   
Sbjct: 753  GKDAEQKANPLVIVFRNYALDGASLKDIRPEFAAGEGYVLNFSVKDTSPKKMAEKLSPTE 812

Query: 264  KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              H         + G                  V+    + +  I        A +SG F
Sbjct: 813  SFHTWTSAYC--QEGISGTANGQYSANRGWRMAVVIDGYMVSSPILNVPLKNHASVSGKF 870

Query: 324  TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            T      LA+ L++G++     ++ E  + +DLG     +G  +   GL ++++ M V Y
Sbjct: 871  THREVSKLASDLKSGAMSFVPEVLSEETISSDLGKKQCTQGIISACCGLAMLIVLMSVYY 930

Query: 384  GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
               G++A  ++ LN++L  A L  L A LTL  +AGIVL +G+AVD+N+LV ERIREE  
Sbjct: 931  RFGGVIASGAVLLNLLLIWAALQYLDAPLTLSGLAGIVLAMGMAVDANVLVFERIREEFL 990

Query: 444  KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             +QS+  S++ G+++A+  IFDSN+T ++A+ +LFF   G ++GFA+T+ L I  SMFTA
Sbjct: 991  LSQSLKKSVEKGYTKAFGAIFDSNLTTVLASALLFFLDTGPIKGFALTLILGIFSSMFTA 1050

Query: 504  ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
            + + +   +  +   +   + +                    + W V  S+    C    
Sbjct: 1051 LFMTKFFFMLWMNKTQHTQLHMMNKFVGIKHDFLRGC----KKLWAVSGSVFLLGCVALG 1106

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLS-----------------VVRSNLESLQIGDI 606
                    G+DFKGG                                 R           
Sbjct: 1107 FGAWNSVLGMDFKGGYAFTFNPKEHGISDVAQMRGKVVHKLQEAGLSSRDFRIQTFGSSE 1166

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN-------TEIVGP 659
              + +  +K                   L +    ++E     + +           V  
Sbjct: 1167 KIKIYFSDKALSYTKADTSLSPKINDHELALAVGLLSETGLDFSTETLNETQNFWSKVSS 1226

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG---- 715
            K+S+++  +  +G++ +   +L+Y+ +RF+W +A  A+  LI D+  T     +      
Sbjct: 1227 KLSKKMRYQATIGLLGALAIILLYVSLRFEWQYAFSAVCALIHDLLATCAVLFIAHFFLK 1286

Query: 716  -IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             I+ +L A+ A++T++GYS+N+ ++++DR+R++ +    +     L++ ++ +T  R+V 
Sbjct: 1287 KIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRQANLFT-PMHVLVNDALQKTFSRTVM 1345

Query: 775  TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+      +L +   GGS + +FA  M  GI++   SS++IA P+LLF+     ++ 
Sbjct: 1346 TTATTLSVLLMLLFIGGSSVFNFAFIMTIGILLGTLSSLYIAPPLLLFMVRKENRSK 1402


>gi|116872956|ref|YP_849737.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116741834|emb|CAK20958.1| protein-export membrane protein SecDF [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 754

 Score =  290 bits (742), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 185/701 (26%), Positives = 339/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            N   +V    +  ++  + +R++ +G++E +IQ  G++RI +QL G  D +  R++L T
Sbjct: 51  ANGDGKVSKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGITDQAEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N  +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  +           D   L+AP ++  + + K +ISG+FT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLAELLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G+VA  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVVASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553
            R ++  +++   + +       +   I                    F++     +   
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRYDFVKHHRLFLSTF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  + AN+ +  + ++ +L+++ +          
Sbjct: 461 AGIVIVGIIILSIFRLNLGIDFASGTRAEITANQTLTETQIKKDLDTINMPSDDIVFQGT 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             +  +                +   V P + +EL + G   +
Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKDYF------NDKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +++I +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASILIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     D ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVVFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G++ +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLISSVFSSIFMAMQLWYVFKARQLRKK 735



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R   +   +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAEL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +        +  VG +  ++ +++ I+  II  IA+ I++   ++    +
Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+    
Sbjct: 283 VASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 77/730 (10%), Positives = 193/730 (26%), Gaps = 34/730 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED----DF 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV         
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPANGDGKV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               L      L   +   G+   S++ +  N+I +  A    +      ++   Q    
Sbjct: 58  SKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGITDQAEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S N I  +   + ++   + +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       ++DP+ L     ++   +    +  +        +  L +S      
Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAELLNSGALPVK 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++    S G                  V   F  M A         +I       L   
Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVVASITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNE-RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           P    +       +   I     +   +              F+              + 
Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRYDFVKHHRLFLSTFAGIVIVGIIILSIFRLN 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             + F  G  A      T+  + +      I++    ++F     K   +          
Sbjct: 478 LGIDFASGTRAEITANQTLTETQIKKDLDTINMPSDDIVFQGTGSKTAVVSYKGTLSQND 537

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +         + +      ++  ++                    + + V     + ++ 
Sbjct: 538 VAKFKDYFNDKYKHEPSISTVSPTVGKELAKNGFWALGVASILIVLYIAVRFEFYMGIAA 597

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S L    I  I F     E +             +    +    +     + +   + 
Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704
            E +   +++ L +     +      +   + +          F     +G I+++   I
Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVVFTVLALVLFGSESILNFSIALLVGLISSVFSSI 717

Query: 705 TKTLGFFALF 714
              +  + +F
Sbjct: 718 FMAMQLWYVF 727


>gi|154505870|ref|ZP_02042608.1| hypothetical protein RUMGNA_03412 [Ruminococcus gnavus ATCC 29149]
 gi|153793888|gb|EDN76308.1| hypothetical protein RUMGNA_03412 [Ruminococcus gnavus ATCC 29149]
          Length = 757

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 194/701 (27%), Positives = 329/701 (46%), Gaps = 21/701 (2%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   D      +  ++  +++R++Q    E+T+ + G +RI I++PG  D + +   
Sbjct: 51  ITYQVKGDTPSKEDMSDTIYKLQKRVEQYST-EATVYQEGDNRISIEIPGVTDANEILSE 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVR--FLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           LG    + F K   ++    +       ++     ++   E  V ++G  +  A +    
Sbjct: 110 LGQPGSLYFIKEKDSDGNPNYGLDTSGHYVLAKSMDELKEEGSVVLTGTDIKSAKSGSYQ 169

Query: 264 KT----HKPVVDISFDEMGARRFFEVTRDNIGKPLAV--VLDGRVLTAPVINQAIPSGKA 317
            +    ++ VV +S  + G  +F E T+        +    DG +++ P +N  I  G+A
Sbjct: 170 DSTTGANENVVQLSMTKEGTEKFAEATKAAKEAEETIAIYYDGELISVPRVNAEITDGQA 229

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
            I G+   E A  LA+ +R G L ++L  +    VGA LG ++I     A   GL ++ +
Sbjct: 230 IIEGSMEYEEAEQLASTIRIGGLSVELEEIRSNVVGAQLGEEAISTSLMAGAIGLAIVFV 289

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FM ++Y   GL +  ++ +   L L LL+    TLTLP IAGI+LGIG+AVD+N+++  R
Sbjct: 290 FMCMVYLLPGLASSLALVIYTGLILVLLNAFDITLTLPGIAGIILGIGMAVDANVIIFAR 349

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           ++EE    +SV  +L+ GF +A S I D NIT LIA  VL+  G G V+GFA T+ L I+
Sbjct: 350 VKEELTAGKSVKSALNAGFHKAMSAILDGNITTLIAAAVLWLKGSGTVKGFAQTLALGIV 409

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +SMFTA+ I R ++          +     +           I F+  R     +S+   
Sbjct: 410 VSMFTALVITRMIVYAFYAVGIRNTKLYGRIKEEREP-----IDFLGKRKIFFAVSVAVI 464

Query: 558 ICSICLLFTHGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
           +     +  +        NY ++FKGG    V  ++   L  +   +           N 
Sbjct: 465 LVGFVFMGVNAGTGKGALNYSLEFKGGTSTNVTFDKAYTLKEIDETMIPDLEKVTDDPNI 524

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
             +             ++   +     K    E         TE +   +S E+    I+
Sbjct: 525 QVQTVANSNQVIFKTQTLDLEKREAFAKYMADEFGVEEKDITTENISSTVSSEMRVDAII 584

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            V I+ + ML+YIW+RFK   FA  A+  LI D+   L F+ +  I    T +A +LT++
Sbjct: 585 AVAIATVFMLLYIWLRFKDIRFATSAVVALIHDVLVVLAFYVIARISVGNTFIACMLTIV 644

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           GYS+N  +V++DR+R+ MK    +     L+++ I  TL RS+YTS+  F+ V  + + G
Sbjct: 645 GYSINATIVIFDRIREEMKTKKRTEELDTLVNRCITRTLTRSIYTSLTTFVMVAVLFIMG 704

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            S I  FA+P+  GI+  A SS+ I   +   +     K A
Sbjct: 705 VSSIKEFALPLMVGIICGAYSSVCITGALWYVMKTKIGKKA 745



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 88/250 (35%), Gaps = 4/250 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +       ++                        G    +         +I 
Sbjct: 191 KFAEATKAAKEAEETIAIYYDGELISVPRVNAEITDGQAIIEGSMEYEEAEQLASTIRIG 250

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +        + +VG ++  E I   ++   I    + +++ + +     L +   L++ 
Sbjct: 251 GLSVELEEIRSNVVGAQLGEEAISTSLMAGAIGLAIVFVFMCMVY-LLPGLASSLALVIY 309

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               L     F I   L  +A ++  IG +V+  V+++ R+++ +       S +  ++ 
Sbjct: 310 TGLILVLLNAFDITLTLPGIAGIILGIGMAVDANVIIFARVKEELTA---GKSVKSALNA 366

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             ++ +   +  ++   I+   + + G   +  FA  +A GIVV+  +++ I   I+   
Sbjct: 367 GFHKAMSAILDGNITTLIAAAVLWLKGSGTVKGFAQTLALGIVVSMFTALVITRMIVYAF 426

Query: 824 YDWRAKNARI 833
           Y    +N ++
Sbjct: 427 YAVGIRNTKL 436



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 7/134 (5%)

Query: 1   MRNNPWLVILYSMICCIGLL-IALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+ +  ++ L   +  I LL         +              I LGLDL GG  +  +
Sbjct: 1   MKKSKGIISLILTVVLIALLGFTTVVGFGKGQTGA------AKNIKLGLDLEGGVSITYQ 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           V  D      +     +L+  +++        ++  N+I++          I  ++    
Sbjct: 55  VKGDTPSKEDMSDTIYKLQKRVEQYSTEATVYQEGDNRISIEIPGVTDANEILSELGQPG 114

Query: 120 QGVNSKLNVDPKKN 133
                K        
Sbjct: 115 SLYFIKEKDSDGNP 128


>gi|313608662|gb|EFR84506.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes FSL F2-208]
          Length = 754

 Score =  290 bits (741), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 186/701 (26%), Positives = 337/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +RI+ +G++E +IQ  G +RI +QL G  D    R++L T
Sbjct: 51  ADGKGTVSKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N  +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  +           D   L+AP ++  + + K +ISG+FT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G++A  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553
            R ++  +++   + +       +   I                    F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+++ +          
Sbjct: 461 AAIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGS 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             +     +             +   V P + +EL + G   +
Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     D ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R   +   +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +        +  VG +  ++ +++ I+  II  +A+ I++   ++    +
Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+    
Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 81/730 (11%), Positives = 199/730 (27%), Gaps = 34/730 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               L      L   +   G+   S++ +  N+I +  A    +E     ++   Q    
Sbjct: 58  SKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S N I  +   + ++   + +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       ++DP+ L     ++   +    +  +        +  L +S      
Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++    S G                  V   F  M A          I       L   
Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473
           P    +       +   I         +R +      L +    A   +    ++   + 
Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFKLN 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             + F  G  A      T+  + +     AI +    ++F     K   +          
Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGSGSKTAVVSYKGTLSQND 537

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +         + +      ++  ++                    + + V     + ++ 
Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S L    I  I F     E +             +    +    +     + +   + 
Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704
            E +   +++ L +     +      +   + +          F     +G ++++   I
Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717

Query: 705 TKTLGFFALF 714
              +  + +F
Sbjct: 718 FMAMQLWYVF 727


>gi|217964326|ref|YP_002350004.1| protein-export membrane protein SecDF [Listeria monocytogenes
           HCC23]
 gi|217333596|gb|ACK39390.1| protein-export membrane protein SecDF [Listeria monocytogenes
           HCC23]
 gi|307571108|emb|CAR84287.1| protein-export membrane protein SecDF [Listeria monocytogenes L99]
          Length = 754

 Score =  290 bits (740), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 186/701 (26%), Positives = 337/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +RI+ +G++E +IQ  G +RI +QL G  D    R++L T
Sbjct: 51  ADGKGTVSKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N  +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  +           D   L+AP ++  + + K +ISG+FT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G++A  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553
            R ++  +++   + +       +   I                    F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+++ +          
Sbjct: 461 AAIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGS 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             +     +             +   V P + +EL + G   +
Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     D ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRRK 735



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R   +   +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +        +  VG +  ++ +++ I+  II  +A+ I++   ++    +
Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+    
Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 81/730 (11%), Positives = 199/730 (27%), Gaps = 34/730 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               L      L   +   G+   S++ +  N+I +  A    +E     ++   Q    
Sbjct: 58  SKQTLTDTVASLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S N I  +   + ++   + +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       ++DP+ L     ++   +    +  +        +  L +S      
Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++    S G                  V   F  M A          I       L   
Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473
           P    +       +   I         +R +      L +    A   +    ++   + 
Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFKLN 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             + F  G  A      T+  + +     AI +    ++F     K   +          
Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGSGSKTAVVSYKGTLSQND 537

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +         + +      ++  ++                    + + V     + ++ 
Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S L    I  I F     E +             +    +    +     + +   + 
Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704
            E +   +++ L +     +      +   + +          F     +G ++++   I
Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717

Query: 705 TKTLGFFALF 714
              +  + +F
Sbjct: 718 FMAMQLWYVF 727


>gi|291455321|ref|ZP_06594711.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           albus J1074]
 gi|291358270|gb|EFE85172.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           albus J1074]
          Length = 788

 Score =  290 bits (740), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 204/715 (28%), Positives = 361/715 (50%), Gaps = 30/715 (4%)

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
           +    I +   +       + + ++++E++RQR+D +G++E  + R GS RI+++LPG Q
Sbjct: 58  SGGTRIVLQAQEAQGRTPDAESTDRALEVLRQRVDALGVAEPQLVRSGSDRIVVELPGVQ 117

Query: 198 DPSRLRQLLGTTAKMSFHKV--LPNNSKKGFMFGVRFLRDSDGNQYLVE-DKVEISGIHL 254
           DP    +++G TA+++FH V      +      G R L D D     +E     ++G  +
Sbjct: 118 DPREAAEVIGRTAQLTFHPVRGEAEKAAPQAEDGSRALADPDRPDAFLELGPTALTGEGV 177

Query: 255 NGATANFDPKTHK-PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------ 301
           + A  +FD  + +   V +SF++  A  +  +T +                         
Sbjct: 178 SDARPDFDAASGEGWAVTLSFEKKAAGAWTRLTGEAACAAPGDPGRRVAIVLDDRVVSAP 237

Query: 302 -VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +         I  G  QI+G F  E A  LAA+++ G+LP+ + +VE+  VG  LG+D+
Sbjct: 238 GMRETVPCGTGITGGSTQITGGFDAEGARELAALVKGGALPLPVEVVEQSTVGPSLGADA 297

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  A + GL    +F+  +Y   GL+A  ++ L  +++ A +  LGATLT+P IAG 
Sbjct: 298 IRAGAWAALIGLACTAVFITAVYRLLGLLATVALSLYGLISYAAIVALGATLTMPGIAGF 357

Query: 421 VLGIGLAVDSNILVNERIREEN----RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           VL +G+AVD+N+LV ER REE     R+ + +   L  GF++A+S + DSN+T LIA  +
Sbjct: 358 VLAVGMAVDANVLVFERAREEYGQASRRPKDLRRPLARGFAKAWSAVLDSNVTTLIAAGL 417

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFF 532
           LF    G V+GF +T+ + +L SM +A+ I R +  + +    ++       +    R  
Sbjct: 418 LFALATGPVKGFGVTLAVGVLASMVSALVITRVLADWALGRGLVRRRPQATGMAGKGRLR 477

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
              +    + MR+    + +S    + ++  +   GL  G++F GG Q      RPVD  
Sbjct: 478 TRLEQRPPRLMRSGSRWLLLSGGLLLVALAGVGVRGLELGVEFTGGRQTQYATERPVDAE 537

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             R+ + +    +   Q  D +   LV ++  P +   +      V+  + E     T++
Sbjct: 538 TARAAVSAAGFPEAVVQRADQDGASLVTVRTGPLEDAEE----RRVRAALAEHGGEVTVE 593

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             ++VGP + +EL  K ++ + ++  A L+Y+ +RF+   AL A+  ++ D+   +G FA
Sbjct: 594 RDDLVGPSLGQELRDKAVLALAVAVGAQLVYLTVRFRGTLALAAVVAMVQDVLLVVGLFA 653

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G   +   +AA+LT++GYSVND VVV+D   + ++    S  +  L D ++ +TL R+
Sbjct: 654 WLGKPVDSVFLAALLTVVGYSVNDTVVVFD-RLRELRRLRPSAPWETLGDLAVGQTLPRT 712

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           V T + A   +L +A+ GG  +  FA+ +  GI V   S+IF A P+ + +   R
Sbjct: 713 VNTGLGAVFVLLALALSGGGTLTDFAVALLAGITVGIGSTIFTAMPLAVRLERRR 767



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 66/180 (36%), Gaps = 2/180 (1%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VGP +  + IR G    +I      ++I   ++    L A   L L    +      
Sbjct: 286 QSTVGPSLGADAIRAGAWAALIGLACTAVFITAVYRLL-GLLATVALSLYGLISYAAIVA 344

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRS 772
            G    +  +A  +  +G +V+  V+V++R R+     +      R  + +   +     
Sbjct: 345 LGATLTMPGIAGFVLAVGMAVDANVLVFERAREEYGQASRRPKDLRRPLARGFAKAWSAV 404

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + +++   I+   +       +  F + +A G++ +  S++ I   +  +         R
Sbjct: 405 LDSNVTTLIAAGLLFALATGPVKGFGVTLAVGVLASMVSALVITRVLADWALGRGLVRRR 464


>gi|329766810|ref|ZP_08258340.1| hypothetical protein HMPREF0428_00037 [Gemella haemolysans M341]
 gi|328839321|gb|EGF88903.1| hypothetical protein HMPREF0428_00037 [Gemella haemolysans M341]
          Length = 764

 Score =  290 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 188/700 (26%), Positives = 328/700 (46%), Gaps = 31/700 (4%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
               +   A++ + + I +RI+ +G+SE  I     +RI ++L G +D    R++L T A
Sbjct: 60  EGQTIDEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLSTQA 119

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            ++   +       G                  +  +++      G   +   K  +   
Sbjct: 120 NLTIRDIEDKVLLDGSDLQENGASQGFDQNNKPDVNLKLKDADKFGNITSEISKRGQGKN 179

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +                   KP         ++AP + Q I S   QI+GNFT++ A  
Sbjct: 180 LMVIWMDFNEGDSFKAEAAKEKPK-------YVSAPQVAQTINSKDVQITGNFTVKEAKE 232

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           +AA+L +G+LP+KL  +   +VGA  G+D++ +   A    L +I LFM+V+Y   G VA
Sbjct: 233 MAALLNSGALPVKLTEIYSNSVGAQFGADALNQTVYAGAIALAIICLFMLVIYRVPGFVA 292

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
              +   V +T+   +++   LTLP IA ++LG+G+AVD+NI++ ERI+EE R    +  
Sbjct: 293 SVMMVAYVYITVVFFNMISGVLTLPGIAALILGVGMAVDANIIMYERIKEEVRAGYPLKK 352

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +   G  ++  TIFDS  T +IA VVLF FG  +V+GFA  + LSIL+S  TA+   R +
Sbjct: 353 AYLDGAKQSLWTIFDSQFTTVIAAVVLFIFGTSSVKGFATMLLLSILVSFITAVFGTRLL 412

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFS 557
           +  ++      +           I +                + F +       +SI   
Sbjct: 413 LSLLVNSNIFNNHPGYFGVSKKSIHETKFGINSLNLSTKFEWLSFTKHMKKFFALSIAIM 472

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           I     L  + LN GIDF  G ++ V AN  + +  V+ +L +L++ D        +K  
Sbjct: 473 IAGSISLGMNKLNLGIDFSSGTRIDVAANTELSVDKVQEDLNNLKVKDEKIVLSPDKKQA 532

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +  +   G   +        KK   +           +V P I +EL +  +  ++ ++
Sbjct: 533 TIHSKESFGQEKSIEIKEYFAKKYEKDAN-------LSVVSPVIGKELAKNALFALMYAS 585

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           I ++IY+  RF+W   L ++  L+ D+   +   +L  +E ++T +AAVLT++GYS+ND 
Sbjct: 586 IGIIIYVAFRFEWRMGLTSVIALLHDVCIIIFITSLLRLEVDITFIAAVLTIVGYSINDT 645

Query: 738 VVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +V +DR+R++M       +      L+D S+ +TL RS+ T +   I+V+ M + G S I
Sbjct: 646 IVTFDRIREHMHHEKVLKSKEQIYKLVDVSLRQTLTRSINTVLTVIITVVVMLLLGSSSI 705

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833
            +F + +  G+V    SS+FIAA +   +      K  +I
Sbjct: 706 YTFNVALLIGLVFGLYSSLFIAAQLWAVLKVRELNKKGKI 745



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 47/134 (35%), Gaps = 18/134 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +  L  L  ++  +  +                S     +++LGLDL+GG  ++ +V+
Sbjct: 10  KFSRILAFLSLVVIILTSI-------------GLTSKSNAEKVNLGLDLQGGFEVLYQVE 56

Query: 62  E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116
                       ++  +D +   +   G+    +  +  N+I +  A  + +E+    ++
Sbjct: 57  PLKEGQTIDEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLS 116

Query: 117 LFLQGVNSKLNVDP 130
                    +    
Sbjct: 117 TQANLTIRDIEDKV 130


>gi|46907755|ref|YP_014144.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|226224128|ref|YP_002758235.1| protein-export membrane protein SecDF [Listeria monocytogenes
           Clip81459]
 gi|254931462|ref|ZP_05264821.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes HPB2262]
 gi|46881024|gb|AAT04321.1| protein-export membrane protein SecDF [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225876590|emb|CAS05299.1| Putative protein-export membrane protein SecDF [Listeria
           monocytogenes serotype 4b str. CLIP 80459]
 gi|293583014|gb|EFF95046.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes HPB2262]
 gi|332311969|gb|EGJ25064.1| Preprotein translocase subunits SecDF [Listeria monocytogenes str.
           Scott A]
          Length = 754

 Score =  290 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 185/701 (26%), Positives = 337/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +RI+ +G++E +IQ  G +RI +QL G  D    R++L T
Sbjct: 51  ADGKGTVSKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N  +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  +           D   L+AP ++  + + K +ISG+FT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G++A  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553
            R ++  +++   + +       +   I                    F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+++ +          
Sbjct: 461 AAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGS 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             +     +             +   V P + +EL + G   +
Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     + ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R   +   +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +        +  VG +  ++ +++ I+  II  IA+ I++   ++    +
Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+    
Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 81/730 (11%), Positives = 199/730 (27%), Gaps = 34/730 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               L      L   +   G+   S++ +  N+I +  A    +E     ++   Q    
Sbjct: 58  SKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S N I  +   + ++   + +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       ++DP+ L     ++   +    +  +        +  L +S      
Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++    S G                  V   F  M A          I       L   
Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473
           P    +       +   I         +R +      L +    A   +    ++   + 
Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFRLN 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             + F  G  A      T+  + +     AI +    ++F     K   +          
Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSDDIVFQGSGSKTAVVSYKGTLSQND 537

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +         + +      ++  ++                    + + V     + ++ 
Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S L    I  I F     E +             +    +    +     + +   + 
Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704
            E +   +++ L +     +      +   + +          F     +G ++++   I
Sbjct: 658 KEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717

Query: 705 TKTLGFFALF 714
              +  + +F
Sbjct: 718 FMAMQLWYVF 727


>gi|302671352|ref|YP_003831312.1| protein-export membrane protein SecDF [Butyrivibrio proteoclasticus
           B316]
 gi|302395825|gb|ADL34730.1| protein-export membrane protein SecDF [Butyrivibrio proteoclasticus
           B316]
          Length = 755

 Score =  290 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 187/703 (26%), Positives = 315/703 (44%), Gaps = 15/703 (2%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +SI       +      +  ++  ++QR+DQ    ES + + GS+RI I++PG  D 
Sbjct: 46  AGGVSITYEVVGDENPDKEDMSDTIYKLQQRVDQYST-ESLVYQEGSNRINIEIPGVSDA 104

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFG--------VRFLRDSDGNQYLVEDKVEISG 251
           + + + LG    + F     +     + +           +       +   +  + +SG
Sbjct: 105 NAILEELGQPGNLYFIAQTDSEGNPNYEYKLDSTYGLFYTYELSKTIEELEADGSIVLSG 164

Query: 252 IHLNGATANFDPKTHKPVV-----DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
             +  A A +   ++         D +     A           G+ + +  DG+ ++ P
Sbjct: 165 SDVETAQAVYQQDSYGGNEPVVSLDFTDAGAAAFAEATTKAYANGESIGIYYDGQFISVP 224

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +  AI  GKA I+G    E A  LA+M+R G L ++LN +    VGA LGSD+I     
Sbjct: 225 KVQAAITDGKAVITGMTDYENAANLASMIRIGGLKLQLNELRSNVVGAQLGSDAIRTSLY 284

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           A   G  LI +FMIV +   GL A  ++     L + +LS    TLTLP IAGI+L IG+
Sbjct: 285 AAAVGFALIAVFMIVFFRVLGLSATLALAFYSSLMVFMLSAFEQTLTLPGIAGIILSIGM 344

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+N+LV  RI+EE    + V  +   G+++A S+I D N+T  I    LF  G G+++
Sbjct: 345 AVDANVLVFSRIKEEIAGGKDVNEARKAGYNKALSSIIDGNVTTFIVAFWLFILGTGSIK 404

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
           GFAIT+   I++SMFTA+ I R +   +        +                 +     
Sbjct: 405 GFAITLMFGIVLSMFTALVITRTITSLLYGIGLQNPVLYGKAKAPVKFDFVGKRKVFYGV 464

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              + I+   ++           NY +DF GG    V  +   +L+ +   +        
Sbjct: 465 SCAIVIAGFIAMGVNAGQGKGAFNYSLDFVGGTSTTVTFSEAKELADLEKTVAEDIKKAA 524

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                  +             ++   +   +    +      +     E +   IS E+ 
Sbjct: 525 GINQIQIQTVTGTNQVIFKTSTLDVKQREAVEDVLVNNYEVSADNIAAETISSVISSEMR 584

Query: 667 RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              I+ +++S + MLIYIWIRFK   F   AI  L  D    +  +A        T +A 
Sbjct: 585 VDAIIALLVSLVCMLIYIWIRFKDIKFGAAAIIALAHDALIVIVSYAFTRYAVGNTFIAV 644

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           VLT+IGYS+ND +V +DR+R+N+   T+   + DL++ S+ +T+ RS++TS   F +V  
Sbjct: 645 VLTIIGYSINDTIVTFDRIRENLANATSKKEYADLVNGSVAQTVTRSLFTSATTFFTVCA 704

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  +G + I +FA+P+  G++    SSIFIA+P+   +     
Sbjct: 705 LYAFGVADIKAFALPLMVGVICGTYSSIFIASPMWYDLKTKFK 747



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 1/124 (0%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDD-FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
           + I LGLDL GG  +  EV  D+      +     +L+  + +        ++  N+I +
Sbjct: 37  SSIPLGLDLAGGVSITYEVVGDENPDKEDMSDTIYKLQQRVDQYSTESLVYQEGSNRINI 96

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
                     I +++                        +    +  +      +     
Sbjct: 97  EIPGVSDANAILEELGQPGNLYFIAQTDSEGNPNYEYKLDSTYGLFYTYELSKTIEELEA 156

Query: 161 EQSM 164
           + S+
Sbjct: 157 DGSI 160


>gi|47094198|ref|ZP_00231913.1| protein-export membrane protein SecDF [Listeria monocytogenes str.
           4b H7858]
 gi|254824414|ref|ZP_05229415.1| export membrane protein SecDF [Listeria monocytogenes FSL J1-194]
 gi|254852151|ref|ZP_05241499.1| export membrane protein SecDF [Listeria monocytogenes FSL R2-503]
 gi|254993585|ref|ZP_05275775.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes FSL J2-064]
 gi|255520695|ref|ZP_05387932.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes FSL J1-175]
 gi|300764806|ref|ZP_07074796.1| protein-export membrane protein SecDF [Listeria monocytogenes FSL
           N1-017]
 gi|47017425|gb|EAL08243.1| protein-export membrane protein SecDF [Listeria monocytogenes str.
           4b H7858]
 gi|258605454|gb|EEW18062.1| export membrane protein SecDF [Listeria monocytogenes FSL R2-503]
 gi|293593649|gb|EFG01410.1| export membrane protein SecDF [Listeria monocytogenes FSL J1-194]
 gi|300514482|gb|EFK41539.1| protein-export membrane protein SecDF [Listeria monocytogenes FSL
           N1-017]
          Length = 754

 Score =  290 bits (740), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 185/701 (26%), Positives = 337/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +RI+ +G++E +IQ  G +RI +QL G  D    R++L T
Sbjct: 51  ADGKGTVSKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N  +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  +           D   L+AP ++  + + K +ISG+FT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G++A  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553
            R ++  +++   + +       +   I                    F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+++ +          
Sbjct: 461 AAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDAINMPSDDIVFQGS 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             +     +             +   V P + +EL + G   +
Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     + ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R   +   +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +        +  VG +  ++ +++ I+  II  IA+ I++   ++    +
Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+    
Sbjct: 283 IACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 81/730 (11%), Positives = 200/730 (27%), Gaps = 34/730 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               L      L   +   G+   S++ +  N+I +  A    +E     ++   Q    
Sbjct: 58  SKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S N I  +   + ++   + +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       ++DP+ L     ++   +    +  +        +  L +S      
Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++    S G                  V   F  M A          I       L   
Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473
           P    +       +   I         +R +      L +    A   +    ++   + 
Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFRLN 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             + F  G  A      T+  + +     AI++    ++F     K   +          
Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAINMPSDDIVFQGSGSKTAVVSYKGTLSQND 537

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +         + +      ++  ++                    + + V     + ++ 
Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S L    I  I F     E +             +    +    +     + +   + 
Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704
            E +   +++ L +     +      +   + +          F     +G ++++   I
Sbjct: 658 KEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717

Query: 705 TKTLGFFALF 714
              +  + +F
Sbjct: 718 FMAMQLWYVF 727


>gi|16800630|ref|NP_470898.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           innocua Clip11262]
 gi|16414049|emb|CAC96793.1| lin1562 [Listeria innocua Clip11262]
          Length = 754

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 185/701 (26%), Positives = 340/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +R++ +G++E +IQ  G++RI +QL G  D +  R++L T
Sbjct: 51  ADGKGTVSKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N  +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDASNNPIVTLKLKSADKFASVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  + N             L+AP ++  + + K +ISG+FT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKKNPA----------YLSAPNVSSVLDTDKVEISGSFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLAELLNSGALPVKMTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G++A  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVIASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553
            R ++  +++   + +       +   I                    F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRYDFVKHHRLFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+++ +          
Sbjct: 461 AAIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSNDIVFQGS 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             +  +  +             +   V P + +EL + G   +
Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKDYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     D ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R       +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAEL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +    T   +  VG +  ++ +++ I+  II  +A+ I++   ++    +
Sbjct: 229 LNS-----GALPVKMTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+    
Sbjct: 283 IASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 79/730 (10%), Positives = 198/730 (27%), Gaps = 34/730 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               L      L   +   G+   S++ +  N+I +  A    +      ++   Q    
Sbjct: 58  SKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S N I  +   + ++   + +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDASNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       +++P+ L     ++   +    +  +        +  L +S      
Sbjct: 178 DWKEGQKYKTEREKKNPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAELLNSGALPVK 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           + +    S G                  V   F  M A         +I       L   
Sbjct: 238 MTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLPGVIASITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473
           P    +       +   I         +R +      L +    A   +    ++   + 
Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRYDFVKHHRLFLSIFAAIVIVGIVILSIFKLN 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             + F  G  A      T+  + +     AI +    ++F     K   +          
Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSNDIVFQGSGSKTAVVSYKGTLSQND 537

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +         + +      ++  ++                    + + V     + ++ 
Sbjct: 538 VAKFKDYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S L    I  I F     E +             +    +    +     + +   + 
Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704
            E +   +++ L +     +      +   + +          F     +G ++++   I
Sbjct: 658 KEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717

Query: 705 TKTLGFFALF 714
              +  + +F
Sbjct: 718 FMAMQLWYVF 727


>gi|256827664|ref|YP_003151623.1| protein-export membrane protein SecF/protein-export membrane
           protein SecD [Cryptobacterium curtum DSM 15641]
 gi|256583807|gb|ACU94941.1| protein-export membrane protein SecF/protein-export membrane
           protein SecD [Cryptobacterium curtum DSM 15641]
          Length = 977

 Score =  289 bits (739), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 196/793 (24%), Positives = 333/793 (41%), Gaps = 84/793 (10%)

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V            L       + +  +    + V S  ++ S +II  R++ +G SE+T+
Sbjct: 35  VMFMPPQQKINQGLDIQGGLSVVLTANSTTGEAVTSEDMDISRDIIESRVNALGASEATV 94

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH--------KVLPNNSKKGFMFGVRFL 233
           Q+ GS++IL+Q+PG  D       +G T K+ F          V           G   +
Sbjct: 95  QKQGSNQILVQIPGLSDTQEALNTIGKTGKLEFARLDSFTDEDVRQKIENGQLTQGSTTV 154

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG--------------- 278
            D+ GNQ   E    ++                +  VD +    G               
Sbjct: 155 SDAYGNQLPAETTQPLTVEEGTYTPIVTGSNIERVTVDRASSGGGLYYAVNLQLDADGTK 214

Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG 338
           A              + ++LDG+V +AP +   I  GK +I+GN+T + A  L  +L +G
Sbjct: 215 AFADASRDLAPTHGKIVIILDGQVNSAPAVQSEITGGKVEITGNYTQDQANGLKTVLESG 274

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
           SLP+  +  + + VG  LG D++  G    +AGLVL++L+++V Y   G++   ++ +  
Sbjct: 275 SLPVSFSYAQSQTVGPTLGQDALSSGVLVALAGLVLVMLYLLVFYHGLGMITAAAMAVFA 334

Query: 399 ILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           +L L LL+ L      +L+L  +AGIVL IG+A DS+IL  ER REE R  +S+  +   
Sbjct: 335 VLYLGLLATLSHFGLFSLSLAGVAGIVLTIGMAADSSILTLERFREEIRFGRSIRAASIT 394

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT-----MGLSILISMFTAISIVRA 509
           G      T  D+++ +L+  + LFF     V+GF +T     M   +++ +F A  I   
Sbjct: 395 GVRHGIQTSIDADLVSLVTALSLFFLASSGVKGFGLTLALGIMCDIVMMLLFKAPIIRLL 454

Query: 510 MMIFIIRYKKMKSIDINPLSRF-------------------------------------- 531
               I ++     +  +  +                                        
Sbjct: 455 APHAIAKHPGFWGVKDSQAASKVYGRLAAAEGEMVETAVSAEAINSAESEAYASRKGGAE 514

Query: 532 -----------FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
                              I F+ AR   + I+ L  +    ++   GLN GI+F GG  
Sbjct: 515 GTEAAQAASKVRGRFIKHDINFLGARKVFLSIAALAMVLCALVIGVRGLNLGIEFVGGTS 574

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +       V    VRS   +    D   Q  +        ++    D+ A       V +
Sbjct: 575 IEFNETGSVTTDQVRSAFAAAGESDAVIQTTESNGEPGFIVRIANTDASAAAGAATQVAQ 634

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +              +GP     +I+  ++ +++S + ++IYI IRF++   + AI  L
Sbjct: 635 SLNLSTDSF---QVSTIGPDWGASIIQSMVIALLVSFVLIIIYIAIRFEYKMGITAIIAL 691

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           + DI   +G +AL G E N   +AA+LT++GYS+ D VVV+ R+  NM+      +F  +
Sbjct: 692 LHDIILVVGVYALVGREINPNTIAALLTILGYSLYDTVVVFHRISDNMQHSEIKCTFMTM 751

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            + S+N+   RS+ T++ + I VL M ++G   +  FA  M  G++  A SSI IA P+ 
Sbjct: 752 ANHSMNQVFMRSINTTLTSIIPVLAMLLFGSETLKDFAFAMTIGLLAGAYSSIAIACPLF 811

Query: 821 LFIYDWRAKNARI 833
                   KN R+
Sbjct: 812 AIWKTREPKNVRL 824


>gi|315282443|ref|ZP_07870855.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           marthii FSL S4-120]
 gi|313613906|gb|EFR87638.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           marthii FSL S4-120]
          Length = 754

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 188/701 (26%), Positives = 340/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +RI+ +G++E +IQ  G +RI +QL G  D +  R++L T
Sbjct: 51  ADGKGTVSKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGITDQAEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N  +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  +           D   L+AP ++  + + K +ISG+FT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLAELLNSGALPVKMTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G+VA  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVVASITLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGIS 553
            R ++  +++   + +                  ++ F L        F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVRRKDIHNLHEGINSFNLKTHFDRYDFVKHHRLFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+ + +          
Sbjct: 461 TAIVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLKEIDMPSDDIVFQGS 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             +  +  +             +   V P + +EL + G   +
Sbjct: 521 GSKTAVISYKGTLSQNDVAKFKDYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     D ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISTKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 96/258 (37%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R   +   +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAEL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +    T   +  VG +  ++ +++ I+  II  +A+ I++   ++    +
Sbjct: 229 LNS-----GALPVKMTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+    
Sbjct: 283 VASITLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 79/732 (10%), Positives = 191/732 (26%), Gaps = 38/732 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               L      L   +   G+   S++ +  N+I +  A    +      ++   Q    
Sbjct: 58  SKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGITDQAEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S N I  +   + ++   + +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       ++DP+ L     ++   +    +  +        +  L +S      
Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAELLNSGALPVK 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           + +    S G                  V   F  M A         +I       L   
Sbjct: 238 MTEVYSTSVGAQFGQDALQETILAGIIGVMAIFIFMMAVYRLPGVVASITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P    +       +   I         +R +      L +    A   +    +   I  
Sbjct: 418 PGFFAVRRKDIHNLHEGINSFNLKTHFDRYDFVKHHRLFLSIFTAI--VIVGIVILSIFK 475

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           + L        R             +   +  +      I+         +         
Sbjct: 476 LNLGIDFASGTRAEVTANQTLTETQIKKDLKEIDMPSDDIVFQGSGSKTAVISYKGTLSQ 535

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ---LGVLANRPVDL 591
            D    +      +    SI     ++         + +     +    + V     + +
Sbjct: 536 NDVAKFKDYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGI 595

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + + S L    I  I F     E +             +    +    +       +   
Sbjct: 596 AAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISTKMQRF 655

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLIL 702
           +  E +   +++ L +     +      +   + +          F     +G ++++  
Sbjct: 656 KTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFS 715

Query: 703 DITKTLGFFALF 714
            I   +  + +F
Sbjct: 716 SIFMAMQLWYVF 727


>gi|16803567|ref|NP_465052.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes EGD-e]
 gi|47097024|ref|ZP_00234597.1| protein-export membrane protein SecDF [Listeria monocytogenes str.
           1/2a F6854]
 gi|224499812|ref|ZP_03668161.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes Finland 1988]
 gi|224501533|ref|ZP_03669840.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes FSL R2-561]
 gi|254828239|ref|ZP_05232926.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes FSL N3-165]
 gi|254829714|ref|ZP_05234369.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes 10403S]
 gi|254898307|ref|ZP_05258231.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes J0161]
 gi|254912201|ref|ZP_05262213.1| protein-export membrane protein [Listeria monocytogenes J2818]
 gi|254936529|ref|ZP_05268226.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes F6900]
 gi|16410956|emb|CAC99605.1| lmo1527 [Listeria monocytogenes EGD-e]
 gi|47014606|gb|EAL05566.1| protein-export membrane protein SecDF [Listeria monocytogenes str.
           1/2a F6854]
 gi|258600627|gb|EEW13952.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes FSL N3-165]
 gi|258609123|gb|EEW21731.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes F6900]
 gi|293590174|gb|EFF98508.1| protein-export membrane protein [Listeria monocytogenes J2818]
          Length = 754

 Score =  289 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 185/701 (26%), Positives = 339/701 (48%), Gaps = 34/701 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +R++ +G++E +IQ  G++RI +QL G  D +  R++L T
Sbjct: 51  ADGKGTVSKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N  +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  +           D   L+AP ++  + + K +ISG+FT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLAELLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G++A  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVIASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553
            R ++  +++   + +       +   I                    F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+++ +          
Sbjct: 461 AAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDTIDMPSDDIVFQGS 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             +     +             +   V P + +EL + G   +
Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     D ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 735



 Score =  107 bits (266), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + + +           R   +   +   +  +        +   +   ++     +
Sbjct: 169 PDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAEL 228

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           L         +        +  VG +  ++ +++ I+  II  IA+ I++   ++    +
Sbjct: 229 LNS-----GALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP-GV 282

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+    
Sbjct: 283 IASITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKV---G 339

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            S +   +    E     +  ++   I    +  +G S I  FA  +   I+V+  ++++
Sbjct: 340 RSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVW 399

Query: 815 IAAPILLFIYDWRAKNAR 832
            +  +L  +      N +
Sbjct: 400 GSRFLLGLLVKSNWLNNK 417



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 80/737 (10%), Positives = 197/737 (26%), Gaps = 48/737 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               L      L   +   G+   S++ +  N+I +  A    +      ++   Q    
Sbjct: 58  SKQTLTDTVTSLDKRVNSLGVAEPSIQIEGNNRIRVQLAGVTDQAEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S N I  +   + ++   + +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       ++DP+ L     ++   +    +  +        +  L +S      
Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLAELLNSGALPVK 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++    S G                  V   F  M A         +I       L   
Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIASITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P    +       +   I         +R +        +   R + +IF + +   I  
Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDF-------VKHHRLFLSIFAAIVIVGIVI 470

Query: 475 VVLFFFGGGAVRGFA-----ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + +F    G                     +   +  +      I+         +    
Sbjct: 471 LSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDTIDMPSDDIVFQGSGSKTAVVSYK 530

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ---LGVLAN 586
                 D    +      +    SI     ++         + +     +    + V   
Sbjct: 531 GTLSQNDVAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFE 590

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + ++ + S L    I  I F     E +             +    +    +     +
Sbjct: 591 FYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISM 650

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAI 697
            +   +  E +   +++ L +     +      +   + +          F     +G +
Sbjct: 651 KMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLV 710

Query: 698 TTLILDITKTLGFFALF 714
           +++   I   +  + +F
Sbjct: 711 SSVFSSIFMAMQLWYVF 727


>gi|328465564|gb|EGF36793.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes 1816]
          Length = 738

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 186/702 (26%), Positives = 338/702 (48%), Gaps = 34/702 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +    V    +  ++  + +RI+ +G++E +IQ  G +RI +QL G  D    R++L T
Sbjct: 51  ADGKGTVSKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLST 110

Query: 209 TAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           TA++SF         +    + G         N  +V  K++ +    +           
Sbjct: 111 TAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPD 170

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V     + G +   E  +           D   L+AP ++  + + K +ISG+FT E
Sbjct: 171 NQLVIWLDWKEGQKYKTEREKK----------DPAYLSAPNVSSVLDTDKVEISGSFTTE 220

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   
Sbjct: 221 EAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLP 280

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G++A  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +
Sbjct: 281 GVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGR 340

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S   + ++G   A+  I D N+T LI   VLF+FG  +++GFA  + +SIL+S  TA+  
Sbjct: 341 STKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWG 400

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGIS 553
            R ++  +++   + +       +   I                    F++     + I 
Sbjct: 401 SRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIF 460

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+++ +          
Sbjct: 461 AAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDAINMPSDDIVFQGS 520

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             +     +             +   V P + +EL + G   +
Sbjct: 521 GSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPSISTVSPTVGKELAKNGFWAL 574

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS
Sbjct: 575 GVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYS 634

Query: 734 VNDKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +ND +V  DR+R     M+ + T     + ++K++ +T  RS+ T +    +VL + ++G
Sbjct: 635 INDTIVTADRIRDISMKMQRFKTKEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFG 694

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              I +F+I +  G+V +  SSIF+A  +       + +  R
Sbjct: 695 SESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKKR 736



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 81/730 (11%), Positives = 200/730 (27%), Gaps = 34/730 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----F 65
           +      + ++        + ++           I+LGLDL+GG  ++ EV   D     
Sbjct: 7   IVIFFLVVAIIFGAVFGTAKMVMQN---------INLGLDLQGGFEVLYEVSPADGKGTV 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
               L      L   +   G+   S++ +  N+I +  A    +E     ++   Q    
Sbjct: 58  SKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQEEARKMLSTTAQLSFR 117

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             N     N   +     + +   S N I  +   + ++   + +  + +   ++  I  
Sbjct: 118 DANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASVTKTILAEAPDNQLVIWL 177

Query: 184 LG-SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +       ++DP+ L     ++   +    +  +        +  L +S      
Sbjct: 178 DWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFTTEEAKDLADLLNSGALPVK 237

Query: 243 VEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++    S G                  V   F  M A          I       L   
Sbjct: 238 MKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAVYRLPGVIACITLVAYTYLVLL 297

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L+       +P     I G      A ++        + +  +      VG      +I
Sbjct: 298 ILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAI 357

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-------LTLALLSLLGATLTL 414
             G    +    ++  F       +  V   SI ++ +         L LL         
Sbjct: 358 LDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 417

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IA 473
           P    +       +   I         +R +      L +    A   +    ++   + 
Sbjct: 418 PGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFRLN 477

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             + F  G  A      T+  + +     AI++    ++F     K   +          
Sbjct: 478 LGIDFASGTRAEVTANQTLTETQIKKDLDAINMPSDDIVFQGSGSKTAVVSYKGTLSQND 537

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +         + +      ++  ++                    + + V     + ++ 
Sbjct: 538 VAKFKNYFEDKYKHEPSISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAA 597

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + S L    I  I F     E +             +    +    +     + +   + 
Sbjct: 598 ILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQRFKT 657

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKWYFALGAITTLILDI 704
            E +   +++ L +     +      +   + +          F     +G ++++   I
Sbjct: 658 KEEIANAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSI 717

Query: 705 TKTLGFFALF 714
              +  + +F
Sbjct: 718 FMAMQLWYVF 727


>gi|323485740|ref|ZP_08091076.1| hypothetical protein HMPREF9474_02827 [Clostridium symbiosum
           WAL-14163]
 gi|323400920|gb|EGA93282.1| hypothetical protein HMPREF9474_02827 [Clostridium symbiosum
           WAL-14163]
          Length = 722

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 176/629 (27%), Positives = 300/629 (47%), Gaps = 14/629 (2%)

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F       +             +       +  V + G  ++G+ A  DPKT + VV 
Sbjct: 95  VRFPWKSDEKNFNPEEAIAELGETARLTFRDEKGNVLVEGKDVSGSEAVRDPKTGESVVS 154

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +SFD  GA  F E T    G+ + + +D  +++APV+ QAI  G A ISG  + E A  L
Sbjct: 155 LSFDHAGAAAFAEATGRLTGQRIGIYMDETLISAPVVRQAITDGTAMISGMNSPEEAKQL 214

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A  +RAG+LP  +       +   LG+ ++     A +  L+LI LFM+  Y   G+V+ 
Sbjct: 215 AEKIRAGALPFSMKTTNYNTISPTLGNQALQSMAAAGLFSLLLICLFMMTYYRLPGIVSC 274

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + L +  +S+   T+TLP IAG++L  G+AVD+NI+++ERI EE R   +V  +
Sbjct: 275 LTLLFQMSLQVLAISIPQYTITLPGIAGLILSAGMAVDANIIISERISEELRNKMTVKQA 334

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           +  G+  A+S++ D NIT      +L FFG G +  F  T+   +LI++F  + + RA++
Sbjct: 335 VRRGYKNAFSSVLDGNITTAAVAAILMFFGSGTMLSFGYTLLTGVLINLFAGVWMSRAIL 394

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
             +  Y       +    R   +     + F + R W +  +    +    L   +G+  
Sbjct: 395 NSLTEYPAFCKERMFRKKREKKV-----LGFSKKRKWILCFTCCVLLMGTLLSAKNGMKL 449

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE-KNFLVRLQYQPGDSVA 630
              F GG+ L     +  D   V++ +E+     +S Q  +         +    G+   
Sbjct: 450 DTQFTGGVILKYTYAQEADPEAVKAGVENELGRPVSVQTSEDPLTGEKKLVLTLAGNRGI 509

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +    V   +  +     +  T  V P I  + ++  +  V++SA+ +++YI  RF  
Sbjct: 510 LPKEQAQVTDFLNSLGGNFALSETFAVEPYIGAKALKNSVTAVVLSALFIIVYIRFRFSS 569

Query: 691 YFALGA----ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              L A    I  L+ DI   +  F +F I  N   VA  LT+IGYS+ND +V+YDR+R+
Sbjct: 570 LSGLAAGMSAILALVHDILIVVFIFGIFRIPVNDAFVAVTLTIIGYSINDTIVLYDRIRE 629

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMA 802
           NMK   T  S   L+D+SI ETLGRSV T++   +S+  + ++        I  F++P+ 
Sbjct: 630 NMKEAGTKTSLAGLVDRSITETLGRSVNTALTVVMSIFIVYIFSVIYRIESIQVFSLPLL 689

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++    SS+ IA P+  +  + +    
Sbjct: 690 AGLISGCYSSVCIAGPLWAYWEERKLTKN 718



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 48/166 (28%), Gaps = 16/166 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+N    + +  ++  + +  A+                    +  G+D+RGG   V E 
Sbjct: 1   MKNKKNHIWIACIVIAVFVYAAIFGCGD--------DVKGIREMRFGIDIRGGVEAVFEP 52

Query: 61  DED-DFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRF-----KENIA 112
             D     G L+   D +   L  + I     ++ +    + + F           E   
Sbjct: 53  AGDYRPSEGELESARDVIEGRLDAKNILDREVTVDKKAGHVIVRFPWKSDEKNFNPEEAI 112

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
            ++    +        +        +  + +    +  ++  +   
Sbjct: 113 AELGETARLTFRDEKGNVLVEGKDVSGSEAVRDPKTGESVVSLSFD 158


>gi|157693168|ref|YP_001487630.1| bifunctional preprotein translocase subunit SecD/SecF [Bacillus
           pumilus SAFR-032]
 gi|157681926|gb|ABV63070.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Bacillus pumilus SAFR-032]
          Length = 742

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 195/697 (27%), Positives = 342/697 (49%), Gaps = 30/697 (4%)

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
           D++ +  +  ++E + +R + +G+SE  I   G++RI +QL G +D +R R++L T A++
Sbjct: 54  DKITNSVLVSTVEALNRRANVLGVSEPNISIEGNNRIRVQLAGVKDQNRAREILSTEAQL 113

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
           SF          G        + +          V++      G             V  
Sbjct: 114 SFRDTNDKELLNGADLVENSAKQTFSQTNEPIVTVKLKDAKKFGDVTR--------KVAA 165

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                    + +  + +  K      D + ++AP +NQ I S   QI G FT++ A  LA
Sbjct: 166 MAPNNQLVIWLDYNKGDSFKKEVSKSDHKYVSAPNVNQEINSSDVQIEGKFTVQEAKDLA 225

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
           ++L AG+LP+KL      +V A  G  ++ +   A + G+ LI LFM+  Y   GL+A  
Sbjct: 226 SILNAGALPVKLTEKYSTSVSAQFGEQALNETVFAGIVGIALIFLFMLFYYRIPGLIAVI 285

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++   + +TL +   +GA LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +SV  + 
Sbjct: 286 TLSTYIYITLQVFDWMGAVLTLPGIAALILGVGMAVDANIITYERIKEELKLGKSVRSAF 345

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
             G  R+++TIFD+N+T++IA  VLFFFG  +V+GFA  + LSIL S  TA+ + R ++ 
Sbjct: 346 RSGNRRSFATIFDANLTSIIAGGVLFFFGTSSVKGFATMLILSILTSFITAVFLSRFLLG 405

Query: 513 FIIRYKKMKSIDINP-------------LSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
            ++  + +                                  F+  R   +  SI  +I 
Sbjct: 406 LLVESRALDRKKGWFGVRQKDIIDIHETTENTEPKTPFDKWDFVSKRKGFMIFSIAITIA 465

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
            I +L    LN GIDF  G ++ + ++  +  + +  +   L +   S      ++N   
Sbjct: 466 GIIVLSIFKLNAGIDFASGTRVDIQSDHKLSTAQIEQDFHKLDLDTDSVVLSGQKENQAA 525

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                  +      V +  K          T  N   V P + +EL R  +  +II++I 
Sbjct: 526 ARFVGVPNKEKIAEVKDYFK------DKYGTEPNVSTVSPTVGKELARNALYAIIIASIG 579

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ++IY+ IRF++  A+ AI +L+ D    + FF++  +E ++T +AA+LT+IGYS+ND +V
Sbjct: 580 IIIYVSIRFEYKMAIAAIASLLYDAFFIVAFFSITRLEVDVTFIAAILTVIGYSINDTIV 639

Query: 740 VYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
            +DR+R+ MK            +++ S+ +T  RS+ T +   I V+ + ++G + I +F
Sbjct: 640 TFDRVREQMKKRKPKTVEDLSYIVNLSLQQTFTRSINTVLTVVIVVIALLIFGSASITNF 699

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833
           ++ +  G++    SS++IAA I L        K A+I
Sbjct: 700 SLALLVGLLTGVYSSLYIAAQIWLMWKGRDLKKPAKI 736



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 18/133 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+      IL   +  + L+      L + +            ++LGLDL+GG  ++ +V
Sbjct: 1   MKKGR---ILAFFLVVL-LIGTGVGLLTKPVA---------KDMTLGLDLQGGFEVLYDV 47

Query: 61  ----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
                ED   N  L    + L       G+   ++  +  N+I +  A  + +    + +
Sbjct: 48  HPVKKEDKITNSVLVSTVEALNRRANVLGVSEPNISIEGNNRIRVQLAGVKDQNRAREIL 107

Query: 116 TLFLQGVNSKLNV 128
           +   Q      N 
Sbjct: 108 STEAQLSFRDTND 120


>gi|160893376|ref|ZP_02074162.1| hypothetical protein CLOL250_00926 [Clostridium sp. L2-50]
 gi|156864951|gb|EDO58382.1| hypothetical protein CLOL250_00926 [Clostridium sp. L2-50]
          Length = 747

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 187/692 (27%), Positives = 324/692 (46%), Gaps = 22/692 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V  +   +      ++ ++  +++RID    +E  +   G+ +I  ++PG  D   + + 
Sbjct: 51  VTYEIQDEDYSDADVQDTIYKLQKRIDSH-TTEHNVYSEGNGKITAEIPGVTDADAILED 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           L    K+ F                  L   D      +     +G              
Sbjct: 110 LSIEGKLEFLDPENYELWSQGKDYTPALTGDDIKGADAKIDSTETGDD------------ 157

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
              VV +SF   GA++F +VT  N+GK + +V DG V++AP + QAI  G A I+   T 
Sbjct: 158 --NVVQLSFTTAGAQKFADVTTANVGKIVYIVYDGEVVSAPTVQQAITDGNAVINSISTY 215

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA  +R G+LP+ L  V    VGA LGS+++     A + G++ I + MI ++  
Sbjct: 216 EEADSLATTIRIGALPLTLKQVRSNIVGATLGSEAVSTTIKAGIIGIICIFIIMICVFRI 275

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+A  S+ L   + L +++L   TLTLP +AGI+L +G+AVD+N+++  RI+EE    
Sbjct: 276 PGLIASLSLTLYTFMILLVMNLFNVTLTLPGLAGIILSVGMAVDANVVIFTRIKEELATG 335

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            SV  S+  GF  A S I D N+T LIA +VL  FG G ++GFAIT+ + I++S+FTA+ 
Sbjct: 336 ASVKQSVKAGFHNALSAIIDGNVTTLIAALVLGIFGTGTIKGFAITLAIGIVLSVFTALV 395

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           + + ++  ++                  +      ++       V +     +       
Sbjct: 396 VSQLVLNALVTLGVNDVKFFGKAKEPGKVNFVKGGKYCIIASVLVIVIGFCFMPIFAKTK 455

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL-----ESLQIGDISFQNFDGEKNFLVR 620
              LN  IDF GG  +    ++   LS    ++     E+  I +             + 
Sbjct: 456 GSALNLSIDFAGGTSITAEFDKAYSLSEAEKDIVPVIAEAAGISEADISVQTVSGTNEIV 515

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +     +      L  V   ++E +  +   +  I G   S ++ R   + V ++A+ M
Sbjct: 516 FKTTELTTQGDDSQLTKVTAALSEKLGATVTNSDNISG-SASSDMTRDAFLSVALAAVLM 574

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           LIYI IRFK   F + A+  L  D+      + L  +    T +A +LT+ GYS+N  ++
Sbjct: 575 LIYIVIRFKDVKFGVSAVLALCHDVAMVFVLYILLRLSVGNTCIACMLTIFGYSINATII 634

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           V+DR+R+N+    T   ++ +++ SIN+T+ R++YTS+  F+++  + V G + I  FA 
Sbjct: 635 VFDRIRENIANAGTKKDYKQIVNLSINQTITRNIYTSLTTFVTIFVLYVMGVAAIKEFAF 694

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  G+V+ A SSI +  P+  +      K  
Sbjct: 695 TLMAGVVIGAYSSICVTGPLWYYFKTGFGKKK 726



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/411 (12%), Positives = 122/411 (29%), Gaps = 18/411 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W++IL+ ++    + +AL     +              ISLGLDL+GG  +  E+ 
Sbjct: 6   KKAIWVLILFLLVLAGSIYVALFGVGDRGKA---------KYISLGLDLKGGLSVTYEIQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           ++D+ +  +Q    +L+  +           +   KIT         + I + +++  + 
Sbjct: 57  DEDYSDADVQDTIYKLQKRIDSHTTEHNVYSEGNGKITAEIPGVTDADAILEDLSIEGKL 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                       L     +   ++             + E   + + Q       ++   
Sbjct: 117 EFLDPE---NYELWSQGKDYTPALTGDDIKGADAKIDSTETGDDNVVQLSFTTAGAQKFA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               ++   I              +          +   ++ +        +R       
Sbjct: 174 DVTTANVGKIVYIVYDGEVVSAPTVQQAITDGNAVINSISTYEEADSLATTIRIGALPLT 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L + +  I G  L     +   K     +   F  M           ++   L   +   
Sbjct: 234 LKQVRSNIVGATLGSEAVSTTIKAGIIGIICIFIIMICVFRIPGLIASLSLTLYTFMILL 293

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V+    +   +P     I        A ++        L    ++ +    G      +I
Sbjct: 294 VMNLFNVTLTLPGLAGIILSVGMAVDANVVIFTRIKEELATGASVKQSVKAGFHNALSAI 353

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
             G    +   +++ +F        G +  F+I L + + L++ + L  + 
Sbjct: 354 IDGNVTTLIAALVLGIF------GTGTIKGFAITLAIGIVLSVFTALVVSQ 398


>gi|70726285|ref|YP_253199.1| bifunctional preprotein translocase subunit SecD/SecF
           [Staphylococcus haemolyticus JCSC1435]
 gi|68447009|dbj|BAE04593.1| protein-export membrane protein SecDF [Staphylococcus haemolyticus
           JCSC1435]
          Length = 761

 Score =  288 bits (737), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 175/697 (25%), Positives = 314/697 (45%), Gaps = 24/697 (3%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
              ++   A++ +   +  R++ +G+SE  IQ     RI +QL G +DP   R++L + A
Sbjct: 53  GDKKIDEKALQSTARTLENRVNVLGVSEPHIQVEDPDRIRVQLAGVKDPDEARKILSSQA 112

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            ++           G        +  +  Q   E  V              +  + K   
Sbjct: 113 NLTIRDANDKVKLTGKDIVQGSAK-QEFKQGTNEPAVTFKLKDRAKFKKVTEEISKKQEN 171

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +    +  ++     ++                   IN           G   +E A  
Sbjct: 172 MMVVW-LDYKKGDSYHKELEKPEDKRKYVSAASVDQPINSDSVEISGGFHGQQGVERAKQ 230

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ +I LFM+  Y   GLVA
Sbjct: 231 IAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASAIGVAIIYLFMVGFYRLPGLVA 290

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ + + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++  
Sbjct: 291 IIALTVYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQ 350

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R +
Sbjct: 351 AYSKANKSSFLTIFDSNLTTVIAAGVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGL 410

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFS 557
           +  ++     K              D                  F++     +G SIL  
Sbjct: 411 LSLLVSSNYFKKKFWLFGVSKKNRHDINEGVDVHDLKTSYEKWNFVKLAKPLIGFSILIL 470

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           I  I +L    LN GIDF  G ++ + ++  +    V   ++ + +     Q    +   
Sbjct: 471 IVGIVILSIFKLNLGIDFSAGTRVDIDSDTKLSQPKVERTMKDMGLTPDQVQINGSDNKQ 530

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                 +         + + V                  V P I +EL +  +  +I +A
Sbjct: 531 ATVQFKKDLSKNEVVELNKKV------NNEYGHKPTVNTVSPMIGQELAKNAMKALIYAA 584

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           I ++IY+ +RF+W   L ++  L+ D+   +  F+L  +E ++T +AAVLT++GYS+ND 
Sbjct: 585 IGIIIYVSLRFEWRMGLSSVLALLHDVFMIVALFSLLRLEVDITFIAAVLTIVGYSINDT 644

Query: 738 VVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +V +DR+R+N+              ++++SI +T+ RSV T +   + V+ + ++G S +
Sbjct: 645 IVTFDRVRENLHRIKVITKPEQIDYIVNRSIRQTMTRSVNTVLTVIVVVVAILIFGASSL 704

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +F++ +  G+V    SS+FIA P+   +   + K A
Sbjct: 705 FNFSLALLIGLVSGVFSSVFIAVPLWGIMKKRQLKKA 741



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/178 (16%), Positives = 78/178 (43%), Gaps = 4/178 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             VG +  ++ + K I    I    + +++   ++    L AI  L + I  TL  F   
Sbjct: 250 NSVGAQFGQDALDKTIFASAIGVAIIYLFMVGFYRLP-GLVAIIALTVYIYLTLVAFNFI 308

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                L  +AA++  +G +V+  +++Y+R++  +++     + +    K+   +      
Sbjct: 309 SGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRI---GRTLKQAYSKANKSSFLTIFD 365

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +++   I+   +  +G S +  FA  +  GI++   +++F++  +L  +        +
Sbjct: 366 SNLTTVIAAGVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRGLLSLLVSSNYFKKK 423



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/385 (11%), Positives = 101/385 (26%), Gaps = 27/385 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65
           + + I  + +L        ++++           ++LGLDL+GG  ++ +V         
Sbjct: 7   IIAFILIVAVLFVGMGLTYKNVV---------KNVNLGLDLQGGFEVLYQVKPLDGDKKI 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
               LQ  +  L + +   G+    ++    ++I +  A  +  +     ++        
Sbjct: 58  DEKALQSTARTLENRVNVLGVSEPHIQVEDPDRIRVQLAGVKDPDEARKILSSQANLTIR 117

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
             N   K                   N   V     +++    ++  ++I   +  +  +
Sbjct: 118 DANDKVKLTGKDIVQGSAKQEFKQGTNEPAVTFKLKDRAKF--KKVTEEISKKQENMMVV 175

Query: 185 GSHRILIQLPG--EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                         + P   R+ +   +              GF       R     + L
Sbjct: 176 WLDYKKGDSYHKELEKPEDKRKYVSAASVDQPINSDSVEISGGFHGQQGVERAKQIAELL 235

Query: 243 VEDKVEIS---------GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
               + +          G        +         V I +  M            I   
Sbjct: 236 NAGSLPVDLKEIYSNSVGAQFGQDALDKTIFASAIGVAIIYLFMVGFYRLPGLVAIIALT 295

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           + + L             +P   A + G      A I+        L I   + +  +  
Sbjct: 296 VYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTLKQAYSKA 355

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLF 378
                 +I+      V    ++  F
Sbjct: 356 NKSSFLTIFDSNLTTVIAAGVLFFF 380


>gi|323693080|ref|ZP_08107299.1| SecD/SecF family protein-export membrane protein [Clostridium
           symbiosum WAL-14673]
 gi|323502834|gb|EGB18677.1| SecD/SecF family protein-export membrane protein [Clostridium
           symbiosum WAL-14673]
          Length = 722

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 176/629 (27%), Positives = 300/629 (47%), Gaps = 14/629 (2%)

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F       +             +       +  V + G  ++G+ A  DPKT + VV 
Sbjct: 95  VRFPWKSDEKNFNPEEAIAELGETARLTFRDEKGNVLVEGKDVSGSEAVRDPKTGESVVS 154

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +SFD  GA  F E T    G+ + + +D  +++APV+ QAI  G A ISG  + E A  L
Sbjct: 155 LSFDHAGAAAFAEATGRLTGQRIGIYMDETLISAPVVRQAITDGTAMISGMNSPEEAKQL 214

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A  +RAG+LP  + I     +   LG+ ++     A +  L+LI LFM+  Y   G+V+ 
Sbjct: 215 AEKIRAGALPFSMKITNYNTISPTLGNQALQSMAAAGLFSLLLICLFMMTYYRLPGIVSC 274

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   + L +  +S+   T+TLP IAG++L  G+AVD+NI+++ERI EE R   +V  +
Sbjct: 275 LTLLFQMSLQVLAISIPQYTITLPGIAGLILSAGMAVDANIIISERISEELRNKMTVKQA 334

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           +  G+  A+S++ D NIT      +L FFG   +  F  T+   +LI++F  + + RA++
Sbjct: 335 VRRGYKNAFSSVLDGNITTAAVAAILMFFGSETMLSFGYTLLTGVLINLFAGVWMSRAIL 394

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
             +  Y       +    R   +     + F + R W +  +    +    L   +G+  
Sbjct: 395 NSLTEYPAFCKERMFRKKREKKV-----LGFSKKRKWILCFTCCVLLMGTLLSAKNGMKL 449

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE-KNFLVRLQYQPGDSVA 630
              F GG+ L     +  D   V++ +E+     +S Q  +         +    G+   
Sbjct: 450 DTQFTGGVILKYTYAQEADPEAVKAGVENELGRPVSVQTSEDPLTGEKKLVLTLAGNRGI 509

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +    V   +  +     +  T  V P I  + ++  +  V++SA+ +++YI  RF  
Sbjct: 510 LPKEQAQVTDFLNSLGGNFALSETFAVEPYIGAKALKNSVTAVVLSALFIIVYIRFRFSS 569

Query: 691 YFALGA----ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              L A    I  L+ DI   +  F +F I  N   VA  LT+IGYS+ND +V+YDR+R+
Sbjct: 570 LSGLAAGMSAILALVHDILIVVFIFGIFRIPVNDAFVAVTLTIIGYSINDTIVLYDRIRE 629

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMA 802
           NMK   T  S   L+D+SI ETLGRSV T++   +S+  + ++        I  F++P+ 
Sbjct: 630 NMKEAGTKTSLAGLVDRSITETLGRSVNTALTVVMSIFIVYIFSVIYRIESIQVFSLPLL 689

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++    SS+ IA P+  +  + +    
Sbjct: 690 AGLISGCYSSVCIAGPLWAYWEERKLTKN 718



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/166 (10%), Positives = 48/166 (28%), Gaps = 16/166 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+N    + +  ++  + +  A+                    +  G+D+RGG   V E 
Sbjct: 1   MQNKKNHIWIACIVIAVFVYAAIFGCGD--------DVKGIREMRFGIDIRGGVEAVFEP 52

Query: 61  DED-DFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRF-----KENIA 112
             D     G L+   D +   L  + I     ++ +    + + F           E   
Sbjct: 53  AGDYRPSEGELESARDVIEGRLDAKNILDREVTVDKKAGHVIVRFPWKSDEKNFNPEEAI 112

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
            ++    +        +        +  + +    +  ++  +   
Sbjct: 113 AELGETARLTFRDEKGNVLVEGKDVSGSEAVRDPKTGESVVSLSFD 158


>gi|332299590|ref|YP_004441511.1| protein-export membrane protein SecD [Porphyromonas asaccharolytica
           DSM 20707]
 gi|332176653|gb|AEE12343.1| protein-export membrane protein SecD [Porphyromonas asaccharolytica
           DSM 20707]
          Length = 976

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 191/805 (23%), Positives = 370/805 (45%), Gaps = 42/805 (5%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           +  +    + L++ + + G+   ++++   Q +I +        + + + +         
Sbjct: 168 SSAIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFW 227

Query: 125 KLNV---------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME-------IIR 168
           +            D    L       ++    +        +   + +         +  
Sbjct: 228 RTYTYDEIASDLIDANNRLTAMANGNDLMPADTAATAADSTATVADSTAVQKPATTGVED 287

Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
               ++ ++        + R  +    E      +Q +     M      P  + +    
Sbjct: 288 VLFSKLNMTNRGTVVGYARRADLDKIDEMLEEAQKQKIIREDLMLLWGNSPIKNPQTGKE 347

Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
              +   +          +    +    +    D   ++PVV ++ ++ GAR++  +T D
Sbjct: 348 TDIYELYAIRGNRNALPDLGGEVVTTARSEVRNDLGQNRPVVTMTMNDEGARKWARLTGD 407

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           NIG+ +A+VLDG V +AP +N  I  G+++ISG FT++    LA +L +G +   + I +
Sbjct: 408 NIGRNIAIVLDGVVYSAPNVNSEITGGRSEISGAFTVDETTDLANVLNSGRMEASVEIEQ 467

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSL 407
           E  VG  LGS+SI  G  + +  ++L++++M + YG   GL+AD ++ LN   TL +L+ 
Sbjct: 468 ESVVGPTLGSESIQAGIISFIIAIILLMIYMCLAYGLIPGLIADGALILNSFFTLGVLAS 527

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             + LTL  IAG+VL +G+AVD+NIL+ ERI+EE R  +S+  ++  G+  A+S IFDSN
Sbjct: 528 FHSVLTLSGIAGLVLTLGMAVDANILIFERIKEELRAGKSMTRAIQDGYGNAFSAIFDSN 587

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           +T +I   VL+ FG G +RGFA T+ + ++ S  TA+ + R ++  + +  +M  +    
Sbjct: 588 LTTVITGGVLYAFGTGPIRGFATTLIIGVIASFITAVFLTRIVVEALDKKGRMDKVTYTT 647

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                L+ +         R  G  I     +  +   F  GLN GI+F GG    V   +
Sbjct: 648 FLTRNLLNNPTYKILE-NRNKGFIIFGSILVLGLIGSFVWGLNRGIEFSGGRNYIVAFEQ 706

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI----- 642
           PV  + VR  L       +   +   E N +            ++   E++         
Sbjct: 707 PVSSAEVREALMQPLDEHVLVTSIGTEGNQVRISTNYGIGMTQESEDEELLVMGKVFEGV 766

Query: 643 ---------TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
                     +    + + +++ V P +S+++ R+ ++ V++S I M +YI +RF+ W F
Sbjct: 767 QKFLPQGTTQQQFVDNYVVSSQRVSPSMSKDISRQAVIAVVLSLIFMGLYILLRFRNWAF 826

Query: 693 ALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           +LGA  ++       +  + L      F +E +   +AA+L +IGYS+ND VVV+DR+R+
Sbjct: 827 SLGAFASVATTTLLIVASYILLWQIMPFTMELDQNFIAALLAIIGYSINDVVVVFDRVRE 886

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +  Y      + ++++++N TL R+V TS + F+ V  + + GG+ + SF   +  GIV
Sbjct: 887 TLHNYPNR-DEKLVMNEALNSTLARTVQTSFSTFLVVFIIFILGGASMRSFTFALLIGIV 945

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
                ++F+A+PI   + + + +  
Sbjct: 946 YGIFCTLFVASPIAYLVRNKQQQRK 970



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 17/202 (8%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
               +I LGLDL+GG ++VL+V+  D +                       + ++  N  
Sbjct: 66  ARNQQIGLGLDLKGGMNVVLKVNGRDLLRNLSGHNQSPAF-----IEAIDKAAKEGSNDF 120

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
             +F           ++           N   +  +   ++++E+  VL +         
Sbjct: 121 VGTFV------KAYKELEPSGSLAVIFSNGPLRDVISPKSSDQEVIEVLQEKYS-----S 169

Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           AI+ ++ +++ RID+ G+      +  G  RIL++LPG  +P R+R+LL  +A + F + 
Sbjct: 170 AIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFWRT 229

Query: 218 LPNNSKKGFMFGVRFLRDSDGN 239
              +     +        +  N
Sbjct: 230 YTYDEIASDLIDANNRLTAMAN 251


>gi|239983500|ref|ZP_04706024.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           albus J1074]
          Length = 766

 Score =  288 bits (736), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 204/715 (28%), Positives = 361/715 (50%), Gaps = 30/715 (4%)

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
           +    I +   +       + + ++++E++RQR+D +G++E  + R GS RI+++LPG Q
Sbjct: 36  SGGTRIVLQAQEAQGRTPDAESTDRALEVLRQRVDALGVAEPQLVRSGSDRIVVELPGVQ 95

Query: 198 DPSRLRQLLGTTAKMSFHKV--LPNNSKKGFMFGVRFLRDSDGNQYLVE-DKVEISGIHL 254
           DP    +++G TA+++FH V      +      G R L D D     +E     ++G  +
Sbjct: 96  DPREAAEVIGRTAQLTFHPVRGEAEKAAPQAEDGSRALADPDRPDAFLELGPTALTGEGV 155

Query: 255 NGATANFDPKTHK-PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------ 301
           + A  +FD  + +   V +SF++  A  +  +T +                         
Sbjct: 156 SDARPDFDAASGEGWAVTLSFEKKAAGAWTRLTGEAACAAPGDPGRRVAIVLDDRVVSAP 215

Query: 302 -VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +         I  G  QI+G F  E A  LAA+++ G+LP+ + +VE+  VG  LG+D+
Sbjct: 216 GMRETVPCGTGITGGSTQITGGFDAEGARELAALVKGGALPLPVEVVEQSTVGPSLGADA 275

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  A + GL    +F+  +Y   GL+A  ++ L  +++ A +  LGATLT+P IAG 
Sbjct: 276 IRAGAWAALIGLACTAVFITAVYRLLGLLATVALSLYGLISYAAIVALGATLTMPGIAGF 335

Query: 421 VLGIGLAVDSNILVNERIREEN----RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           VL +G+AVD+N+LV ER REE     R+ + +   L  GF++A+S + DSN+T LIA  +
Sbjct: 336 VLAVGMAVDANVLVFERAREEYGQASRRPKDLRRPLARGFAKAWSAVLDSNVTTLIAAGL 395

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFF 532
           LF    G V+GF +T+ + +L SM +A+ I R +  + +    ++       +    R  
Sbjct: 396 LFALATGPVKGFGVTLAVGVLASMVSALVITRVLADWALGRGLVRRRPQATGMAGKGRLR 455

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
              +    + MR+    + +S    + ++  +   GL  G++F GG Q      RPVD  
Sbjct: 456 TRLEQRPPRLMRSGSRWLLLSGGLLLVALAGVGVRGLELGVEFTGGRQTQYATERPVDAE 515

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             R+ + +    +   Q  D +   LV ++  P +   +      V+  + E     T++
Sbjct: 516 TARAAVSAAGFPEAVVQRADQDGASLVTVRTGPLEDAEE----RRVRAALAEHGGEVTVE 571

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             ++VGP + +EL  K ++ + ++  A L+Y+ +RF+   AL A+  ++ D+   +G FA
Sbjct: 572 RDDLVGPSLGQELRDKAVLALAVAVGAQLVYLTVRFRGTLALAAVVAMVQDVLLVVGLFA 631

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G   +   +AA+LT++GYSVND VVV+D   + ++    S  +  L D ++ +TL R+
Sbjct: 632 WLGKPVDSVFLAALLTVVGYSVNDTVVVFD-RLRELRRLRPSAPWETLGDLAVGQTLPRT 690

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           V T + A   +L +A+ GG  +  FA+ +  GI V   S+IF A P+ + +   R
Sbjct: 691 VNTGLGAVFVLLALALSGGGTLTDFAVALLAGITVGIGSTIFTAMPLAVRLERRR 745



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 66/180 (36%), Gaps = 2/180 (1%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VGP +  + IR G    +I      ++I   ++    L A   L L    +      
Sbjct: 264 QSTVGPSLGADAIRAGAWAALIGLACTAVFITAVYRL-LGLLATVALSLYGLISYAAIVA 322

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRS 772
            G    +  +A  +  +G +V+  V+V++R R+     +      R  + +   +     
Sbjct: 323 LGATLTMPGIAGFVLAVGMAVDANVLVFERAREEYGQASRRPKDLRRPLARGFAKAWSAV 382

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + +++   I+   +       +  F + +A G++ +  S++ I   +  +         R
Sbjct: 383 LDSNVTTLIAAGLLFALATGPVKGFGVTLAVGVLASMVSALVITRVLADWALGRGLVRRR 442


>gi|266621981|ref|ZP_06114916.1| putative protein-export membrane protein [Clostridium hathewayi DSM
           13479]
 gi|288866313|gb|EFC98611.1| putative protein-export membrane protein [Clostridium hathewayi DSM
           13479]
          Length = 724

 Score =  288 bits (735), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 179/623 (28%), Positives = 310/623 (49%), Gaps = 16/623 (2%)

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT--HKPVVDISF 274
           V                +           +  ++G  +  A      +    K +VD++F
Sbjct: 89  VDIPGVSDANAILEELGKPGSLIFVDEAGQTILNGNQVATAKPVITDENGIKKYMVDLTF 148

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
            + G   F + T  N+GK +A++ DG++ + PV+N+ I  G+ QISG  + E A  LA+ 
Sbjct: 149 TDDGKTVFADATTKNVGKRIAIIYDGKIYSNPVVNEPITQGQCQISGMVSYEEAETLAST 208

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           +R GSL ++L  +    VGA LG ++I     A   G  ++ +FM+++Y   GL A  ++
Sbjct: 209 IRIGSLSLELEELRSNVVGAKLGQEAIATSLKAGAIGFGIVAVFMLLVYLVPGLAAVIAL 268

Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
            + V + L LLS    TLTLP +AGI+L IG+AVD+N+++  RI+EE    ++V  ++  
Sbjct: 269 SIYVGVILILLSAFSVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGLGKTVQSAIKS 328

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GF++A S I D N+T LIA  VLF+ G G V+GFA T+ + I++SM TA+ I + ++  +
Sbjct: 329 GFNKALSAIIDGNVTTLIAAGVLFWRGSGTVKGFASTLAIGIVLSMITALFITKFVLNTL 388

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL----- 569
                  ++       +    D   I F+  R     +S++  +  +  L  +       
Sbjct: 389 F------NLGFQDPKFYGTKTDKKTIDFLGKRKIWFAVSLVVIVIGLGGLVINKTQTGDI 442

Query: 570 -NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            NY ++FKGG    V  N  + L  + S +  +            +K            +
Sbjct: 443 LNYSMEFKGGTSTNVTFNEDMTLDEISSKVVPVVENVTGDAQVQTQKVAGTNEVIIKTRT 502

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
           +       + +  +      +     E +   IS+E+    I+ VII+ I ML+YIW+RF
Sbjct: 503 LTVEERQALDQAMVDNFGVEAEKITAESISGAISKEMKEDAIIAVIIATICMLLYIWLRF 562

Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           K   FA  A+  L+ D+   L F+AL       T +A +LT++GYS+N  +V++DR+R+N
Sbjct: 563 KDIKFAGSAVLALLHDVLVVLAFYALLKWSVGSTFIACMLTIVGYSINATIVIFDRIREN 622

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +K+++  +   ++++ SI +T  RS+ TS+  F+ V  + + G S I  FA+P+  GIV 
Sbjct: 623 LKVHSK-LELAEIVNMSITQTFTRSINTSLTTFVMVFVLFLLGVSSIREFALPLMVGIVC 681

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
              SS+ I   +   +  ++ K 
Sbjct: 682 GTYSSVCITGSLWYVMTVYKNKR 704



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 83/180 (46%), Gaps = 4/180 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +VG K+ +E I   +    I    + +++ + +     L A+  L + +   L   +
Sbjct: 222 RSNVVGAKLGQEAIATSLKAGAIGFGIVAVFMLLVY-LVPGLAAVIALSIYVGVILILLS 280

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F +   L  VA ++  IG +V+  V+++ R+++ + L     + +  I    N+ L   
Sbjct: 281 AFSVTLTLPGVAGIILSIGMAVDANVIIFTRIKEEIGL---GKTVQSAIKSGFNKALSAI 337

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+   +   G   +  FA  +A GIV++  +++FI   +L  +++   ++ +
Sbjct: 338 IDGNVTTLIAAGVLFWRGSGTVKGFASTLAIGIVLSMITALFITKFVLNTLFNLGFQDPK 397



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 60/199 (30%), Gaps = 14/199 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M++N    ++  +I    + +                    N I LGLDL GG  +  + 
Sbjct: 1   MKSNKGKGLIGLIIALALVGLFGYFGYTTM-----------NDIKLGLDLAGGVSITYQA 49

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            E++     +     +L+  ++         ++  N+I +          I +++     
Sbjct: 50  KEENPSAEDMSDTIYKLQQRVQNYSTEAEVYQEGSNRINVDIPGVSDANAILEELGKPGS 109

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +      +  + +L          V++  N  +     +  + +      D    +   
Sbjct: 110 LIFV---DEAGQTILNGNQVATAKPVITDENGIKKYMVDLTFTDDGKTVFADATTKNVGK 166

Query: 181 IQRLGSHRILIQLPGEQDP 199
              +     +   P   +P
Sbjct: 167 RIAIIYDGKIYSNPVVNEP 185


>gi|291518414|emb|CBK73635.1| protein translocase subunit secF/protein translocase subunit secD
           [Butyrivibrio fibrisolvens 16/4]
          Length = 694

 Score =  287 bits (734), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 193/689 (28%), Positives = 330/689 (47%), Gaps = 17/689 (2%)

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
           +    ++    I     ++   +E+ + R+G  RI +++PG  D + L + LGT   + F
Sbjct: 1   MADTILKLQQRIENDLGEESATTEANVYRVGDDRITVEIPGVSDANALLEELGTPGTLYF 60

Query: 215 HKVLPNNSKKGFMFGV------RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH-- 266
                N   + + +G        ++ + D    +    V  +G  +  A           
Sbjct: 61  IAQKDNEGNENYSYGTTEDGKPGYVLNYDIQTLMDNGSVICTGKEVTAAQGRAQQDQTTS 120

Query: 267 --KPVVDISFDEMGARRFFEVT--RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
             K VV + F++ G + F + T      G+ + +  DG+ ++ P +N+AI SG  +ISG 
Sbjct: 121 ATKYVVTLQFNDEGTKAFGDATTVAAVAGETIGIYYDGQFVSVPKVNEAITSGNCEISGM 180

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            ++E A  LA+ +R G L I+L  +E + VGA LG+D++     A   GL L+++F+I++
Sbjct: 181 SSMEEAEKLASYIRIGGLDIELKELESQVVGAQLGADALRTSLIAAGVGLALVMVFLIIM 240

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G+ A  ++ L   + +++L     TLTLP IAG++L IG+AVD+N++V  R+REE 
Sbjct: 241 YLVPGVTASLALALYTAMLVSILKAFDITLTLPGIAGMILSIGMAVDANVIVFARVREEI 300

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           +  + V  +++ GFS+A S I D NIT LIA  VL   G G V+GFAIT+ L +++SMFT
Sbjct: 301 KSGRPVVSAIETGFSKALSAILDGNITTLIAAAVLGILGSGTVKGFAITLALGVVLSMFT 360

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A+ I R ++                                      +  +   ++    
Sbjct: 361 ALVITRILINSFYALGIRSPKAYGEAKEPSKFDFVGKKAVFIGISVAIIAAGFITMGVFK 420

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES--LQIGDISFQNFDGEKNFLVR 620
                GLNY ++F GG    V  N    L+ + + +     +   IS  +          
Sbjct: 421 AKSGSGLNYSLEFLGGTSTTVDFNETYSLADLDAKVVPEIAKTLGISEGSIQTTTVDGSN 480

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                  +++      + +              ++ +G  IS E+  +  + VI++ + M
Sbjct: 481 QAIFKTRTLSLEERTSLNEMFENNYNVKDESITSQSIGSTISGEMRSQSTIAVIVAVLCM 540

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           L+YIW RFK   FA  AI  L+ D+   L  ++   I      +A +LT+IGYSVND +V
Sbjct: 541 LVYIWFRFKDIRFASSAIIALVHDVLIVLALYSFARISVGAAFIACMLTVIGYSVNDTIV 600

Query: 740 VYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           V+DR+R+N K      + + + L ++S+ +TL RS+ TS+   I VL + + G S I  F
Sbjct: 601 VFDRIRENHKAIRIENAETLKTLCNESLAQTLSRSISTSITTAIMVLMLLILGVSSIREF 660

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           A+P+  G++    SSIFIA  +   +   
Sbjct: 661 ALPLLAGVIAGTYSSIFIATQLWYILKLK 689



 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 93/248 (37%), Gaps = 4/248 (1%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 ++ V      +             +          G S  +         +I  
Sbjct: 138 FGDATTVAAVAGETIGIYYDGQFVSVPKVNEAITSGNCEISGMSSMEEAEKLASYIRIGG 197

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           +        +++VG ++  + +R  ++   +    +++++ I +     + A   L L  
Sbjct: 198 LDIELKELESQVVGAQLGADALRTSLIAAGVGLALVMVFLIIMY-LVPGVTASLALALYT 256

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              +     F I   L  +A ++  IG +V+  V+V+ R+R+ +K   +       I+  
Sbjct: 257 AMLVSILKAFDITLTLPGIAGMILSIGMAVDANVIVFARVREEIK---SGRPVVSAIETG 313

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            ++ L   +  ++   I+   + + G   +  FAI +A G+V++  +++ I   ++   Y
Sbjct: 314 FSKALSAILDGNITTLIAAAVLGILGSGTVKGFAITLALGVVLSMFTALVITRILINSFY 373

Query: 825 DWRAKNAR 832
               ++ +
Sbjct: 374 ALGIRSPK 381


>gi|313887470|ref|ZP_07821159.1| export membrane protein SecD [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312923112|gb|EFR33932.1| export membrane protein SecD [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 976

 Score =  287 bits (733), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 192/805 (23%), Positives = 371/805 (46%), Gaps = 42/805 (5%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           +  +    + L++ + + G+   ++++   Q +I +        + + + +         
Sbjct: 168 SSAIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFW 227

Query: 125 KLNV---------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME-------IIR 168
           +            D    L       +++   +        +   + +         +  
Sbjct: 228 RTYTYDEIASDLIDANNRLTAMANGNDLTPADTAATAADSTATVADSTAVQKPATTGVED 287

Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
               ++ ++        + R  +    E      +Q +     M      P  + +    
Sbjct: 288 VLFSKLNMTNRGTVVGYARRADLDKIDEMLEEAQKQKIIREDLMLLWGNSPIKNPQTGKE 347

Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
              +   +          +    +    +    D   ++PVV ++ ++ GAR++  +T D
Sbjct: 348 TDIYELYAIRGNRNALPDLGGEVVTTARSEVRNDLGQNRPVVTMTMNDEGARKWARLTGD 407

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           NIG+ +A+VLDG V +AP +N  I  G+++ISG FT++    LA +L +G +   + I +
Sbjct: 408 NIGRNIAIVLDGVVYSAPNVNSEITGGRSEISGAFTVDETTDLANVLNSGRMEASVEIEQ 467

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSL 407
           E  VG  LGS+SI  G  + +  ++L++++M + YG   GL+AD ++ LN   TL +L+ 
Sbjct: 468 ESVVGPTLGSESIQAGIISFIIAIILLMIYMCLAYGLIPGLIADGALILNSFFTLGVLAS 527

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             + LTL  IAG+VL +G+AVD+NIL+ ERI+EE R  +S+  ++  G+  A+S IFDSN
Sbjct: 528 FHSVLTLSGIAGLVLTLGMAVDANILIFERIKEELRAGKSMTRAIQDGYGNAFSAIFDSN 587

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           +T +I   VL+ FG G +RGFA T+ + ++ S  TA+ + R ++  + +  +M  +    
Sbjct: 588 LTTVITGGVLYAFGTGPIRGFATTLIIGVIASFITAVFLTRIVVEALDKKGRMDKVTYTT 647

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                L+ +         R  G  I     +  +   F  GLN GI+F GG    V   +
Sbjct: 648 FLTRNLLNNPTYKILE-NRNKGFIIFGSILVLGLIGSFVWGLNRGIEFSGGRNYIVAFEQ 706

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV--------- 638
           PV  + VR  L       +   +   E N +            ++   E++         
Sbjct: 707 PVSSAEVREALMQPLDEHVLVTSIGTEGNQVRISTNYGIGMTQESEDEELLVVGKVFEGV 766

Query: 639 -----KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
                +    +    + + +++ V P +S+++ R+ I+ V++S I M +YI +RF+ W F
Sbjct: 767 QKFLPQGTTQQQFVDNYVVSSQRVSPSMSKDISRQAIIAVVLSLIFMGLYILLRFRNWAF 826

Query: 693 ALGAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           +LGA  ++       +  + L      F +E +   +AA+L +IGYS+ND VVV+DR+R+
Sbjct: 827 SLGAFASVATTTLLIVASYILLWQIMPFTMELDQNFIAALLAIIGYSINDVVVVFDRVRE 886

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +  Y      + ++++++N TL R+V TS + F+ V  + + GG+ + SF   +  GIV
Sbjct: 887 TLHNYPNREE-KLVMNEALNSTLARTVQTSFSTFLVVFIIFILGGASMRSFTFALLIGIV 945

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
                ++F+A+PI   +   + +  
Sbjct: 946 YGIFCTLFVASPIAYLVRSKQQQRK 970



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 17/202 (8%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
               +I LGLDL+GG ++VL+V+  D +                       + ++  N  
Sbjct: 66  ARNQQIGLGLDLKGGMNVVLKVNGRDLLRNLSGHNQSPAF-----IEAIDKAAKEGSNDF 120

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
             +F           ++           N   +  +   ++++E+  VL +         
Sbjct: 121 VGTFV------KAYKELEPSGSLAVIFSNGPLRDVISPKSSDQEVIKVLQEKYS-----S 169

Query: 159 AIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           AI+ ++ +++ RID+ G+      +  G  RIL++LPG  +P R+R+LL  +A + F + 
Sbjct: 170 AIDAAINVLKTRIDRFGVVAPNVQRIEGQGRILVELPGVTEPQRVRELLQRSANLQFWRT 229

Query: 218 LPNNSKKGFMFGVRFLRDSDGN 239
              +     +        +  N
Sbjct: 230 YTYDEIASDLIDANNRLTAMAN 251


>gi|154482682|ref|ZP_02025130.1| hypothetical protein EUBVEN_00358 [Eubacterium ventriosum ATCC
           27560]
 gi|149736458|gb|EDM52344.1| hypothetical protein EUBVEN_00358 [Eubacterium ventriosum ATCC
           27560]
          Length = 752

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 185/695 (26%), Positives = 330/695 (47%), Gaps = 6/695 (0%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +S  +  +      +  +E +   +  R+     SE+T  + G  RI + +PGE D 
Sbjct: 60  GTSVSYQVDDSKTKSFTATDLEDTRLKLENRVHTFS-SEATAYKEGDDRITVDIPGEYDA 118

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
             + + LG    + F     +      +    +++  +    +     E+       A+ 
Sbjct: 119 DAVVEELGKPGALYFCTATTDKPTDEQIDNHEYVKVGNNYYKVWLSGNEV-ADAKGVASK 177

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
           N D    + VV++ F+  G   F E+T   +G+   ++ +  +L+A  I  AI  G+A+I
Sbjct: 178 NKDTGKTEYVVNLEFNSKGTTAFGEMTTQYVGQSSYIIYNDEILSALTIQSAITGGQAEI 237

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +G  +++ A  LA+ +R G+L ++L  +  +   A LGSD++ K   A + G ++I+LF+
Sbjct: 238 NGQKSLKEAEELASNIRIGALKVELKEISHKVQSAQLGSDALSKSIKAGIIGFIIIILFL 297

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
           +++Y   GL A  ++   V L L  L+    TLTLP IAGI+L IG+AVD+N+++  RIR
Sbjct: 298 LIVYRIPGLAAGLALLTYVELMLLALNGFDLTLTLPGIAGIILNIGMAVDANVIIYARIR 357

Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
           EE    +    ++  GF +A S I D NIT LIA +VL + G G V+GFA T+G+ ILI 
Sbjct: 358 EEIAAGRRTETAIKTGFKKAASAIIDGNITTLIAALVLLWKGSGTVQGFATTLGIGILIQ 417

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
           +FT++ I R  +  +                   I      +             +  + 
Sbjct: 418 LFTSLVISRIFVWILYYMGFQAPKFYGKEKTRKNINFVEKRKVFFGIAIVCIAIGIGGLI 477

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
                     NY I+FKGG    +  +    +    SN++      ++  +   +K+   
Sbjct: 478 FNSANNGGAFNYSIEFKGGTSTEIQFSENYTMDEFNSNVKPAIEKLLNSTDIQAQKDTNK 537

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIV---PLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              +       +    E +K  + +               +   +S+E+    +V  +++
Sbjct: 538 DGLFTIKTRNFKDNEFEEMKDMLVKDYKAVDDKQNFTNTKISDTVSKEMRSDAVVATVLA 597

Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I ML YIWIRFK  +FAL A+  LI D+   +GF+AL  +    T +A +LT++GYS+N
Sbjct: 598 TICMLFYIWIRFKNIHFALAAVMALIHDVLIVIGFYALSRVTVGTTFIACMLTIVGYSIN 657

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V++DR+R+N           +++D+SI +TL RS+YT++  F+ V  + + G S I 
Sbjct: 658 ATIVIFDRIRENKAAMKRDDKMIEIVDRSITQTLTRSIYTTLTTFVMVFMIFIMGVSSIR 717

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            F +P+  G++  A SS+FI   +   +   ++  
Sbjct: 718 EFTLPLMTGMIAGAFSSVFITGSLWYVLKGKKSDK 752



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/112 (12%), Positives = 39/112 (34%), Gaps = 10/112 (8%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD---EDDF 65
           I+   +      + +     +              ++ GLDL GG+ +  +VD      F
Sbjct: 23  IISIAVVLFLGYVVMFGVGGRHTGSA-------QNVTQGLDLMGGTSVSYQVDDSKTKSF 75

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
               L+    +L + +        + ++  ++IT+        + + +++  
Sbjct: 76  TATDLEDTRLKLENRVHTFSSEATAYKEGDDRITVDIPGEYDADAVVEELGK 127


>gi|295706719|ref|YP_003599794.1| protein-export membrane protein SecDF [Bacillus megaterium DSM 319]
 gi|294804378|gb|ADF41444.1| protein-export membrane protein SecDF [Bacillus megaterium DSM 319]
          Length = 745

 Score =  286 bits (732), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 194/694 (27%), Positives = 341/694 (49%), Gaps = 26/694 (3%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D +   A+  ++E +RQR+D +G+SE +IQ  G+ RI +QL G  +  + R LL T A 
Sbjct: 54  GDVIDKKALNSTVEALRQRVDVLGVSEPSIQIEGNDRIRVQLAGVTNQKQARDLLSTQAN 113

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++F  V       G        + S          +++              +   P   
Sbjct: 114 LTFRDVNDKVLMDGTDLAQGGAKQSFDQSNQPSVSLKLKNAKKFEKITRELSQKPAPNNL 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           I          +E  +D+  K         +  A V +           GNFT+++A  L
Sbjct: 174 IVIWLD-----YEEGKDSYQKEATKQNPKYLSAASVSSVLTQPDVEISGGNFTVKSATQL 228

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L AGSLP+KL+ +   +VGA  G ++++    A + G+ +I L+M+  Y   G++A 
Sbjct: 229 AELLNAGSLPVKLDELYSTSVGAQFGEEALHTTILAGIIGIGIIFLYMLFFYRLPGIIAI 288

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   V L L +  L+   +TLP IA ++LG+G+AVD+NI+  ER+++E +  +S+  +
Sbjct: 289 ITLSFYVYLNLLVFDLMHVVMTLPGIAALILGVGMAVDANIITYERVKDELKTGRSIISA 348

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  R+ +TIFD+NIT ++A +VLFF+G  +V+GFA T+ + I++S  TA+   R +M
Sbjct: 349 YRAGNRRSLATIFDANITTMLAALVLFFYGQSSVKGFATTLMIGIVLSFITAVYGTRLLM 408

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++  +           +   I D                I F++ R      S +  I
Sbjct: 409 SLLVNSRWFDKKPGYFGVKKEQIHDLSKDDGTTVLPTAWDKIDFVKYRKAFFTFSSVLVI 468

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I  +    LN GIDF  G ++ + AN  V  + ++  ++SL I            +  
Sbjct: 469 IGIISVAVFRLNLGIDFTSGTRIEIPANHTVTQAEIQREMKSLDIKTDDVVITGKSNDTG 528

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V       +      + +  K K           N   V P + +EL +  ++ ++I++I
Sbjct: 529 VVRVVGVLNKKEIANLKDHFKDKYGSE------PNVSTVSPTVGKELAKNAMMAIVIASI 582

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF++Y AL A+  L+ D    +  F+L  +E +LT +AAVLT++GYS+ND +
Sbjct: 583 GIIIYVTIRFEFYMALAAVLALLHDAFFIVTVFSLTKLEVDLTFIAAVLTIVGYSINDTI 642

Query: 739 VVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V +DR+R+NM+ + +        +++ S+ ET  RS+ T +   I+V+ + V+G   I +
Sbjct: 643 VTFDRIRENMQKFKSKTFDDLAFIVNLSLRETFTRSMNTVLTVVIAVVALLVFGSESIQN 702

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           F+I +  G+++ A SS+FIAA + L     + K 
Sbjct: 703 FSIALLVGLILGAYSSVFIAAQLWLVWKGKQLKR 736



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 78/178 (43%), Gaps = 4/178 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             VG +   E +   I+  II    + +Y+   ++    + AI TL   +   L  F L 
Sbjct: 247 TSVGAQFGEEALHTTILAGIIGIGIIFLYMLFFYRLP-GIIAIITLSFYVYLNLLVFDLM 305

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            +   L  +AA++  +G +V+  ++ Y+R++  +K   T  S           +L     
Sbjct: 306 HVVMTLPGIAALILGVGMAVDANIITYERVKDELK---TGRSIISAYRAGNRRSLATIFD 362

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++   ++ L +  +G S +  FA  +  GIV++  ++++    ++  + + R  + +
Sbjct: 363 ANITTMLAALVLFFYGQSSVKGFATTLMIGIVLSFITAVYGTRLLMSLLVNSRWFDKK 420



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 52/398 (13%), Positives = 115/398 (28%), Gaps = 24/398 (6%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQN 96
             I LGLDL+GG  ++ +V             L    + LR  +   G+   S++ +  +
Sbjct: 30  KDIKLGLDLQGGFEILYKVSPAKKGDVIDKKALNSTVEALRQRVDVLGVSEPSIQIEGND 89

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQV 155
           +I +  A    ++   D ++         +N     +   +     + S   S      +
Sbjct: 90  RIRVQLAGVTNQKQARDLLSTQANLTFRDVNDKVLMDGTDLAQGGAKQSFDQSNQPSVSL 149

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
                ++  +I R+   +   + + +  +       +   +++ ++      + A +S  
Sbjct: 150 KLKNAKKFEKITRELSQKP--APNNLIVIWLDYEEGKDSYQKEATKQNPKYLSAASVSSV 207

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS-------GIHLNGATANFDPKTHKP 268
              P+    G  F V+               V++        G        +        
Sbjct: 208 LTQPDVEISGGNFTVKSATQLAELLNAGSLPVKLDELYSTSVGAQFGEEALHTTILAGII 267

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
            + I F  M            I     V L+  V     +   +P   A I G      A
Sbjct: 268 GIGIIFLYMLFFYRLPGIIAIITLSFYVYLNLLVFDLMHVVMTLPGIAALILGVGMAVDA 327

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
            I+        L    +I+         G+              +L  L +         
Sbjct: 328 NIITYERVKDELKTGRSIISAYRA----GNRRSLATIFDANITTMLAALVLFFYGQ---- 379

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            +    F   ++   +LS + A      +  +++    
Sbjct: 380 -SSVKGFATTLMIGIVLSFITAVYGTRLLMSLLVNSRW 416


>gi|317495058|ref|ZP_07953430.1| protein-export membrane protein SecD [Gemella moribillum M424]
 gi|316914830|gb|EFV36304.1| protein-export membrane protein SecD [Gemella moribillum M424]
          Length = 764

 Score =  286 bits (731), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 183/699 (26%), Positives = 329/699 (47%), Gaps = 31/699 (4%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
              +   A++ + + I +RI+ +G+SE  I     +RI ++L G +D    R++L T A 
Sbjct: 61  GQTIDEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLSTQAN 120

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           ++   V       G                  +  +++      G   +   K       
Sbjct: 121 LTIRDVDDKILLDGSDLQENGASQGFDQNNKPDVNLKLKDGEKFGNITSEISKRGAGKNL 180

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +         + +    +  K  +   + + ++AP ++Q I S   QI+GNFT++ A  +
Sbjct: 181 MV-------IWMDFNEGDSFKAESAKSNPKYISAPQVSQTINSKDVQITGNFTVKEAKEM 233

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           AA+L +G+LP+KL  +   +VGA  G+D++ +   A    L +I LFM+++Y   G VA 
Sbjct: 234 AALLNSGALPVKLTEIYSNSVGAQFGADALSQTVLAGAIALGIICLFMLIVYRVPGFVAS 293

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
             +   V +T+   +++   LTLP IA ++LG+G+AVD+NI++ ERI+EE R    +  +
Sbjct: 294 VMMVAYVYITVVFFNMISGVLTLPGIAALILGVGMAVDANIIMYERIKEEVRAGYPLKKA 353

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G  ++  TIFDS  T +IA +VLF FG  +V+GFA  + LSIL+S  T++   R ++
Sbjct: 354 YLDGARQSLWTIFDSQFTTVIAAIVLFIFGTSSVKGFATMLLLSILVSFITSVFGTRLLL 413

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPD-------------CIAIQFMRARFWGVGISILFSI 558
             ++      +           I +                + F +        SI   I
Sbjct: 414 SLLVNSNIFNNKPEYFGVNKKSIHESKFGINSLKLNTKFEWLSFTKNMKKFFAFSIAIMI 473

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                L    LN GIDF  G ++ V +N  +    V+ +L SL + D        +K   
Sbjct: 474 AGTISLGMFKLNLGIDFSSGTRIDVASNTELTTEQVKQDLSSLGVKDEKIVLTPDKKQAT 533

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V  +       A          K       +   N  +V P I +EL +  +  ++ ++I
Sbjct: 534 VHSKDSFAQDKAIEI-------KEYFSKKYNKDANLSVVSPVIGKELAKNALFALMYASI 586

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++Y+  RF+W   L ++  L+ D+   +   ++  +E ++T +AAVLT++GYS+ND +
Sbjct: 587 GIILYVAFRFEWRMGLTSVIALLHDVAVIIFITSILRLEVDITFIAAVLTIVGYSINDTI 646

Query: 739 VVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           V +DR+R++M+      +      L+D S+ +TL RS+ T +   I+V+ M + G S I 
Sbjct: 647 VTFDRIREHMRHEKVLTSKEQIYKLVDVSLRQTLTRSINTVLTVIITVVVMLLVGSSSIY 706

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833
           +F + +  G++    SS+FIAA +   +      K  +I
Sbjct: 707 TFNVALLIGLIFGLYSSLFIAAQLWAVLKVRELNKKGKI 745



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 48/132 (36%), Gaps = 18/132 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           +++  L  L  ++  +  +                      +++LGLDL+GG  ++ +V 
Sbjct: 10  KSSRILAFLSLVVIILTSIGLTTK-------------TNAQKVNLGLDLQGGFEVLYQVE 56

Query: 61  ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116
              D        ++  +D +   +   G+    +  +  N+I +  A  + +E+    ++
Sbjct: 57  PLRDGQTIDEAAVKATADTISRRINILGVSEPVITVESGNRIRVELAGVKDQESARKVLS 116

Query: 117 LFLQGVNSKLNV 128
                    ++ 
Sbjct: 117 TQANLTIRDVDD 128


>gi|187735992|ref|YP_001878104.1| protein-export membrane protein SecD [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187426044|gb|ACD05323.1| protein-export membrane protein SecD [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 793

 Score =  286 bits (730), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 183/731 (25%), Positives = 323/731 (44%), Gaps = 29/731 (3%)

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                    L         V+ T      +        +   A+EQ+  I+  R++  G 
Sbjct: 56  SLFSLFQQGLKYGIDIAGGVSFTLSVEPNIGDDGKPIPLTDQAMEQACVILTDRLNSTGA 115

Query: 177 SESTIQRLGSHRI--LIQLPGEQDPSR---LRQLLGTTAKMSFHKVLPNNS--------- 222
           ++  I+      +  +       DP++    + +L   AK+    V P N+         
Sbjct: 116 NDVIIRPKKKDNLNLIEVQIPAADPAKREETKAILTKVAKLQILPVHPRNNELVAEGRIR 175

Query: 223 KKGFMFGVRFLRDSDGNQYL----VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG 278
             G+       ++  G        +E +  ++G  +  A  +     H  V     +E  
Sbjct: 176 VPGYRMYEYTFKNGKGEDVTEKIFLEKRESLTGRDIVRAGVDLARPGH--VNVTLSNEGA 233

Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG 338
            + +   +R  +G     ++   V+ +    QAI S   +ISG      A  L  +L + 
Sbjct: 234 DKMYNLTSRMQLGHDRMAIVLDDVVKSAPTVQAILSKSFEISGLDAPGEAEALTKVL-SN 292

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
            L  KLN      + A LG  ++ +G  A + GL+L  + MI+ Y   GLVA   + +N 
Sbjct: 293 PLTNKLNFESASEISASLGHTALLQGEYAGITGLILCFIMMIIYYRFAGLVAIMGLTINA 352

Query: 399 ILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR 458
           +L L  +S+ G  LTLP IAGIVL +G+AVDSN+L+ ER+REE    +    ++   F +
Sbjct: 353 LLLLGAMSIFGFELTLPGIAGIVLTLGVAVDSNVLIYERLREEKEMGRPFRVAIRNSFDK 412

Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           A+S IFDSNIT+LI  V+L++   G ++GFA+T+ + ++ SM  AI + R +  +     
Sbjct: 413 AFSAIFDSNITSLITAVILYWMATGTIKGFAVTLTVGVITSMIGAILVTRVLFYWADTVG 472

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKG 577
            MK +         L      I FM  + W   +S +  +  I      G +  G+DF G
Sbjct: 473 MMKDLKF-----LNLFKKKTNIDFMSQKIWSCSLSAILLMICIVFGAVKGKDCLGMDFTG 527

Query: 578 GIQLG--VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           G  +   V         V     +       + Q      +             AQ +  
Sbjct: 528 GSSISYLVNKGDISFREVEGVVNKLSLTQKATVQEVAESTDSSKVNILINFSDHAQDKEA 587

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
                     V  +   + E +G  +  + +      +    + +++Y+ +RF+W FA+G
Sbjct: 588 ITTALDKAFPVLDNAPFSEETIGQSMGYDTLITSAWALFFGILGIMVYLTVRFEWTFAIG 647

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A+  L  D+   LG   + G E N+  + A+LT+ GYS+NDK++V+DR+R+ ++    + 
Sbjct: 648 AVIALTHDVLLVLGLVIVSGTELNVIHIGALLTVAGYSINDKIIVFDRIREFLRFSDPNE 707

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           S   +++++IN+TL R++ TS++    ++ +  +GG  +  FA  ++ GI++   SSIFI
Sbjct: 708 SASQIMNEAINQTLSRTILTSLSTLAVLVCLYFFGGPSMEDFAWTISAGILIGTYSSIFI 767

Query: 816 AAPILLFIYDW 826
           A+P  LF    
Sbjct: 768 ASPAALFFSRK 778


>gi|218133213|ref|ZP_03462017.1| hypothetical protein BACPEC_01075 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992086|gb|EEC58090.1| hypothetical protein BACPEC_01075 [Bacteroides pectinophilus ATCC
           43243]
          Length = 776

 Score =  285 bits (729), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 181/689 (26%), Positives = 335/689 (48%), Gaps = 17/689 (2%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  +   D      +  ++  ++QR+      E+ + + G +RI +++P   D + + + 
Sbjct: 65  ITYEIQEDNPSDQDVSDTIYKLQQRVTNYST-EAEVYKEGGNRITVEIPDVTDANAILEE 123

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    + F                  L  SD    +       S               
Sbjct: 124 LGQPGTLMFLDSDGYTKFSNGEECTPLLTGSDVKNAVAGADTSQSSTS------------ 171

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            K VV + F++ G ++F + T  N+GK + +V DG+V++AP +N+AI  G AQI G  + 
Sbjct: 172 -KYVVSLEFNDEGKQKFADATSANVGKIIYIVYDGKVVSAPRVNEAITGGSAQIDGMSSY 230

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           + A  LA+ +R G++P++L  +  + VGA LG  +I     A   GL ++ LFMI+ Y  
Sbjct: 231 DEANTLASYVRIGAMPLELKEMRSQVVGAKLGETAIQTSLLAGAIGLAILCLFMIIAYRV 290

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G+ A  ++ + V L + +LS+   TLTL  IAGIVL IG+AVD+N+++  RIREE    
Sbjct: 291 PGVAACLALVIYVALDIFILSVYEITLTLSGIAGIVLSIGMAVDANVVIFSRIREEIGAG 350

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +SV  +++ GF +A S + D N+T +IA +VL+  G G+V+GFA+T+G+ +++SMFTA+ 
Sbjct: 351 KSVDAAIEQGFKKAMSAVVDGNVTTIIAALVLYLRGSGSVKGFAVTLGIGVVLSMFTALV 410

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           I + ++  +  +          +    +       +   A    +    +  +       
Sbjct: 411 ISKTIVRLLYNFGCKSEKLYGSVRHKKIFDFVSMRKATFAIPGVILAICIIVMIVFTANG 470

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              LNY +DF GG    V     + L+ + +N+  +        N   +K          
Sbjct: 471 KGALNYSLDFAGGTSTTVTFAEEMSLADIDANVIPVIREATGVANVQQQKVTDSTQVVFK 530

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
            D ++  +   +      +     +  +++ +   +S E+ +  ++  +++ I +LIY+W
Sbjct: 531 TDELSLAQREALNTALENKFGVADSDIDSQSISSTVSSEMKQDAVIATVLAIICILIYVW 590

Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            RFK   FA   +  L+ D+     F+    +    T +A +LT++GYSVN  +V++DR+
Sbjct: 591 FRFKDISFAGSTVLALVHDVAIVFTFYVFSRLSVGGTFIACMLTIVGYSVNSTIVIFDRV 650

Query: 745 RK--NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R   N     + + ++ ++++SI  TL RS+ TS+  FI +  + ++G + I  FA+P+ 
Sbjct: 651 RDTINSAADKSKLDYKQVVNESITNTLTRSINTSLTTFIMLAVLYIFGVATIREFALPLM 710

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            GI+  A SS+F+   + L     + K+ 
Sbjct: 711 VGIIAGAFSSVFLTGNMWLIFRAAKEKHQ 739



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 90/182 (49%), Gaps = 4/182 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             +++VG K+    I+  ++   I    + +++ I ++    + A   L++ +   +   
Sbjct: 252 MRSQVVGAKLGETAIQTSLLAGAIGLAILCLFMIIAYRVP-GVAACLALVIYVALDIFIL 310

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +++ I   L+ +A ++  IG +V+  VV++ R+R+ +       S    I++   + +  
Sbjct: 311 SVYEITLTLSGIAGIVLSIGMAVDANVVIFSRIREEIGA---GKSVDAAIEQGFKKAMSA 367

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            V  ++   I+ L + + G   +  FA+ +  G+V++  +++ I+  I+  +Y++  K+ 
Sbjct: 368 VVDGNVTTIIAALVLYLRGSGSVKGFAVTLGIGVVLSMFTALVISKTIVRLLYNFGCKSE 427

Query: 832 RI 833
           ++
Sbjct: 428 KL 429



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 32/75 (42%)

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
           +I  GLDL GG  +  E+ ED+  +  +     +L+  +          ++  N+IT+  
Sbjct: 52  QIKQGLDLAGGVSITYEIQEDNPSDQDVSDTIYKLQQRVTNYSTEAEVYKEGGNRITVEI 111

Query: 103 ADSRFKENIADKVTL 117
            D      I +++  
Sbjct: 112 PDVTDANAILEELGQ 126


>gi|227871701|ref|ZP_03990112.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Oribacterium sinus F0268]
 gi|227842457|gb|EEJ52676.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Oribacterium sinus F0268]
          Length = 712

 Score =  285 bits (728), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 176/619 (28%), Positives = 299/619 (48%), Gaps = 16/619 (2%)

Query: 223 KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF--DPKTHKPVVDISFDEMGAR 280
                                +  V ++G  +  ATA         + V+++ F E GA 
Sbjct: 94  TDANEILAELGEPGTLQFADEDGNVLLTGDDVKTATAGMTNQNNNREYVIELHFTEAGAT 153

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
           +F E T++N+GK + ++ +  V+++P + +AI  G+A IS   + E A  +A+ +R G+L
Sbjct: 154 KFAEATKNNVGKRIFIIYNNEVISSPNVKEAITGGQASISPIESYEQAQKIASTIRIGAL 213

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P+ L  +    +GA LG+++I     A   G+ L++LFM+ +Y   GL A  ++F+ V L
Sbjct: 214 PVSLTELRSNVIGATLGAEAISTSLQAAAIGIALVMLFMLCVYRIPGLAASLALFMYVGL 273

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
            + L+     TLTLP IAGI+L IG+AVD+N+++  RI+EE     SV  ++  GF +A 
Sbjct: 274 EMVLMQAFEVTLTLPGIAGIILSIGMAVDANVIIFTRIKEEIGAGNSVEKAIKSGFEKAL 333

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           S I D NIT LIA  VL+  G G V+GFA T+ + I+IS+ TA+ + R ++         
Sbjct: 334 SAILDGNITTLIAAAVLYIRGSGTVKGFATTLAIGIIISLITALFVTRGLLTAFFA---- 389

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG------LNYGID 574
             +       + +  +   I F+  R     IS L  I     L  +        NY +D
Sbjct: 390 --LGATNPKLYGIKKETKVINFIGFRRIAYSISSLVIIVGFIFLAMNKKNTGDIFNYDLD 447

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           FKGG    +  ++ + +  + S +  L                    +         T  
Sbjct: 448 FKGGSSTTITFDKDLSMMEIDSEVIPLFTAATGGNASTQAAKVAGTNEVIIKTRTMTTEE 507

Query: 635 LEMVKKKITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYF 692
              +   + E          TE +   +S E+ +  +  ++I+   MLIYIWIRF    F
Sbjct: 508 RTKLYDSLQEKFSISEDKIVTENISGAVSTEMKKDAVWALLIAIFCMLIYIWIRFTDIKF 567

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           A  ++  L  D+  T+ F+A+         +A +LT++GYS+N  +V++DR+R+N+   +
Sbjct: 568 ASASVMALSHDVLITVTFYAVLRWAVGSNFIACILTIVGYSINATIVIFDRIRENLHNGS 627

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                  +++++I+ T+ RS+ TS+  FISV  + ++G S I  F +P+  GIV  A SS
Sbjct: 628 KKKGLEYVVNEAISSTVTRSINTSLTTFISVFVLYIFGVSSIRDFTLPLMVGIVAGAWSS 687

Query: 813 IFIAAPILLFIYDWRAKNA 831
           + IA P+         +  
Sbjct: 688 VCIAGPLWFDFVILSKRKK 706



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 82/206 (39%), Gaps = 4/206 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +         +I  +    T   + ++G  +  E I   +    I    +++++   
Sbjct: 196 ESYEQAQKIASTIRIGALPVSLTELRSNVIGATLGAEAISTSLQAAAIGIALVMLFMLCV 255

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++    L A   L + +   +     F +   L  +A ++  IG +V+  V+++ R+++ 
Sbjct: 256 YRIP-GLAASLALFMYVGLEMVLMQAFEVTLTLPGIAGIILSIGMAVDANVIIFTRIKEE 314

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       S    I     + L   +  ++   I+   + + G   +  FA  +A GI++
Sbjct: 315 IGA---GNSVEKAIKSGFEKALSAILDGNITTLIAAAVLYIRGSGTVKGFATTLAIGIII 371

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +  +++F+   +L   +   A N ++
Sbjct: 372 SLITALFVTRGLLTAFFALGATNPKL 397



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 30/81 (37%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96
             +    I LGLDL GG  +  +  E++     +     +L+   +         ++ +N
Sbjct: 25  GYLNAKNIKLGLDLNGGVSITYQTVEENPTAEQMSDTVYKLQMKAQSYSTEAQVYQEGKN 84

Query: 97  KITLSFADSRFKENIADKVTL 117
           +I +    +     I  ++  
Sbjct: 85  RINIDIPGATDANEILAELGE 105


>gi|295107071|emb|CBL04614.1| protein-export membrane protein SecF/protein-export membrane
           protein SecD [Gordonibacter pamelaeae 7-10-1-b]
          Length = 943

 Score =  285 bits (727), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 184/786 (23%), Positives = 335/786 (42%), Gaps = 82/786 (10%)

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             +     L       + +     +   V +  +E+S  II  R++ +G SE+ +Q  G+
Sbjct: 50  PQEKINQGLDIQGGLSVVLTAKGESGQAVSTEDMEKSRAIIESRVNALGASEAVVQVQGT 109

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK-------KGFMFGVRFLRDSDGN 239
            +IL+Q+PG  +       +G T K+ F ++     +        G       + D  GN
Sbjct: 110 DQILVQIPGLTNTEDALDTIGKTGKLEFARLDSFTDQDVKTKIENGQYGNEATITDELGN 169

Query: 240 QYLVEDK-----------VEISGIHLNGA-TANFDPKTHKPVVDISFDEMGARRFFEVTR 287
           Q                   +SG ++           +    V++  D  G   F E T+
Sbjct: 170 QLPAGKTEHLKVEDGTYTPLVSGANITNVSIGKEKEASADYAVNVKLDGEGTTAFAEATK 229

Query: 288 --DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
                   + ++LD  V +AP +   IP+G   I+G ++++ A  L  +L +GSLP+   
Sbjct: 230 ELAPTKGKIVIILDNEVQSAPAVQSEIPNGDVSITGGYSLDEAKSLQTVLESGSLPVSFE 289

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
             + + VG  LG D++  G    + GL +++L+++  Y   GL+   ++ +  +L L +L
Sbjct: 290 YAQSQVVGPTLGQDALASGVLVALIGLAVVMLYLLFFYRGLGLITAAAMGIFAVLYLGIL 349

Query: 406 SLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
           + L      +L+L  IAGIVL IG+A DS+IL  ER REE R  +SV  +   G   A  
Sbjct: 350 ATLSAFGLFSLSLAGIAGIVLTIGMAADSSILTMERFREEIRMGRSVRAASITGVRHAIV 409

Query: 462 TIFDSNITALIATVVLFFFGGGAVRGFAIT-----MGLSILISMFTAISIVRAMMIFIIR 516
           T  D+++  L++ + LFF    +V+GF +T     +   +++ +F A  I       I R
Sbjct: 410 TSVDADLVTLVSALSLFFLATASVKGFGLTLALGIVCDIVMMLLFKAPLIRLLAPKVIAR 469

Query: 517 YKKMKSID-------------------------------------------------INP 527
           + +   +                                                     
Sbjct: 470 HPRFWGVADAEAAAKDYEALALAEGTSTAAAEAGEALNPAESERVVEKRAGAAGEAAAEA 529

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
             +         I F+  R   + ++ +    S  ++   GLN+GI+F GG  +      
Sbjct: 530 ARKPHGRFIKHDINFLGYRRIFLTVAAVLVCASFAVVGVKGLNFGIEFVGGTSVAFHNTG 589

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V    +RS+ ++    D   Q  + +      ++     +   T     V   +     
Sbjct: 590 DVTTEQLRSSFDAAGEPDAVIQTTNADGQEGFLVRTTTTSAEDATARANQVAGDL---GL 646

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +       +GP     +I+  ++  ++S + ++IYI IRF +   + AI  L+ D+   
Sbjct: 647 STDSFEVTTIGPDWGASVIQSSLIAFLVSIVLIIIYIAIRFDYKMGITAIVALLHDLVLV 706

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G +AL G E N   +AA+LT++GYS+ D VVV+ R+  NM+      +F  + + SIN+
Sbjct: 707 MGIYALVGREVNPNTIAALLTILGYSLYDTVVVFHRINDNMRGDDIKCTFMTMANHSINQ 766

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            L R++ T++ + I VL M  +GG  +  FA  MA G++  + SS+ +A P+        
Sbjct: 767 VLVRTINTTLTSLIPVLAMLFFGGETLKDFAFAMAIGLICGSYSSVAVATPLYAMWKTRE 826

Query: 828 AKNARI 833
            +NA++
Sbjct: 827 PRNAKL 832


>gi|254440495|ref|ZP_05053989.1| protein-export membrane protein SecD, putative [Octadecabacter
           antarcticus 307]
 gi|198255941|gb|EDY80255.1| protein-export membrane protein SecD, putative [Octadecabacter
           antarcticus 307]
          Length = 738

 Score =  284 bits (726), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 241/728 (33%), Positives = 383/728 (52%), Gaps = 38/728 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSA 38
           ++ + W   +  ++   G+++A+PN                          +    +P  
Sbjct: 2   LKIDLWKRTVIWLVVAFGIIVAMPNGFYSKVEVSNDAEAIIAESGTTPELVAAAGDWPLF 61

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK- 97
           +P N ++LGLDLRGG+ L+ EV  +      ++    E+R  L  +   V  +       
Sbjct: 62  LPDNLVNLGLDLRGGAQLLAEVKVEQVYEQRMRGMWPEVRDVLAAQRDVVGFVTDESGTP 121

Query: 98  --ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
             + +  ++    +   + V    Q V S  +V      +V  T  ++ I LS       
Sbjct: 122 GELRVRISEPAGMDRAMELVRGLAQQVVSISSVGETDIEVVALTATDLVITLSDAEKVAT 181

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
               + Q++EI+R+RID+ G  E +IQR GS+RILIQ+PG      ++ ++GTTA++ FH
Sbjct: 182 DDRTVRQALEIVRRRIDETGTREPSIQRQGSNRILIQVPGVGSAQEVKDIIGTTAQLGFH 241

Query: 216 KVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
            V+ +        G         D +G  Y+VE    ++G  L  +   F+    +P V 
Sbjct: 242 SVVGSTGDPDARPGPGNMVIPSLDVEGQYYIVERSPVVTGEELVDSQPTFNENN-QPAVT 300

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
             F+  GAR+F + TRDN+G P A+VLD  V++AP I   I  G   I+G FT+E +  L
Sbjct: 301 FRFNPSGARKFGDYTRDNVGSPFAIVLDNEVVSAPTIQSHISGGSGIITGRFTLEESTNL 360

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +LRAG+LP +L+ ++E+ VG DLG DSI  GT A +    L++++M++ YG  G+ A+
Sbjct: 361 AVLLRAGALPAELDFLQEQTVGPDLGQDSINAGTIACIVAFALVLIYMVLSYGLLGVFAN 420

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ +NV L  ALLSL+G TLTLP IAGIVL IG+AVD+N+L+ ERIREE+R  +    +
Sbjct: 421 VALLVNVALIFALLSLIGGTLTLPGIAGIVLTIGMAVDANVLIFERIREESRTAKGPARA 480

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           +++G+ +A S I D+NIT LI   +LF  G G VRGFAIT+GL I+ S+FTAI + R ++
Sbjct: 481 IELGYEKALSAIIDANITTLITAAILFAMGAGPVRGFAITLGLGIITSVFTAIFVTRLLV 540

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
           +     K+ K +         L+    A  F +     +G+S +  + +       GLNY
Sbjct: 541 VIWFERKRPKKVFAA--KYLRLVKSETAFDFFKRGKIWLGLSGIMVVVAFVSFLAQGLNY 598

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQP 625
           GIDFKGG  +   + + +D+S  R+ +  L++G+              +    V +Q Q 
Sbjct: 599 GIDFKGGTTVRTDSTQMIDVSEYRAVIAPLELGEVTITEVFDPTFDADQNVATVAIQAQD 658

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
           G+       +  V+  +  + P  T    E VGP +S ELI+  I+ VI++  A+LIYIW
Sbjct: 659 GEESVSNETISAVQNALRTLDPEMTFPAVESVGPTVSGELIQSAILAVILAIGAVLIYIW 718

Query: 686 IRFKWYFA 693
           +RF+W FA
Sbjct: 719 MRFEWQFA 726



 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 83/179 (46%), Gaps = 4/179 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             + VGP + ++ I  G +  I++   +LIY+ + +     + A   L++++       +
Sbjct: 377 QEQTVGPDLGQDSINAGTIACIVAFALVLIYMVLSYGLL-GVFANVALLVNVALIFALLS 435

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G    L  +A ++  IG +V+  V++++R+R+  +   T+      I+    + L   
Sbjct: 436 LIGGTLTLPGIAGIVLTIGMAVDANVLIFERIREESR---TAKGPARAIELGYEKALSAI 492

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  ++   I+   +   G   +  FAI +  GI+ +  ++IF+   +++  ++ +    
Sbjct: 493 IDANITTLITAAILFAMGAGPVRGFAITLGLGIITSVFTAIFVTRLLVVIWFERKRPKK 551


>gi|167760771|ref|ZP_02432898.1| hypothetical protein CLOSCI_03156 [Clostridium scindens ATCC 35704]
 gi|167661658|gb|EDS05788.1| hypothetical protein CLOSCI_03156 [Clostridium scindens ATCC 35704]
          Length = 725

 Score =  284 bits (726), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 171/697 (24%), Positives = 313/697 (44%), Gaps = 48/697 (6%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ------DPSRLRQ 204
             ++     +E + E+I  R+D   I +  +        +I     +      DP    Q
Sbjct: 55  TKEKPTKAELEMAREVIETRLDAQNILDREVTVDEKAGNIIVRFPWKSDEKDFDPETAIQ 114

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
            LG  A+++F                             +  V + G  +  + A  D +
Sbjct: 115 ELGQMAELTFR--------------------------GPDGTVYVKGSDVARSRAALDEQ 148

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             + +V++ F   GA +F   T +  G+ + + +D  +++ P++N  I  GKA+I+G  +
Sbjct: 149 K-RNIVELEFTSKGAEKFANATEELAGQNMGIYMDEEMISNPLVNGKITGGKAEITGMAS 207

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E +  LA  + +G+LP  +       +   LG  ++     A    +VLI LFM+  Y 
Sbjct: 208 KEESQDLADKINSGALPFSMETTNYNTISPTLGDRALNAMAAAAGITMVLICLFMVAWYR 267

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             G+++  ++   + L +  +S+   T+TLP IAG++L  G+AVD+NI+++ERI EE +K
Sbjct: 268 LPGIISCLTLAFQIALQILAISVPQYTITLPGIAGLILSGGMAVDANIIISERISEELKK 327

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
             SV  ++  G+ RA+S++ D NIT      +L  FG G +  F  T+   ++I++   +
Sbjct: 328 GSSVKRAIKSGYQRAFSSVLDGNITTAAVAGILMIFGSGTMLSFGYTLLTGVIINLLAGV 387

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
            + R+M+  IIRY        N    F    D   + F  A+ +    SI   +      
Sbjct: 388 WMSRSMLNSIIRYG-----FFNQGKWFCKKRDKKVLHFTEAKRYFFLASIAVIVSGTIWS 442

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFLVRLQ 622
             +G+     F GG+ L    +   D   ++  +E +    +S Q  +        + L 
Sbjct: 443 AANGVKLDTQFTGGVILKYTYSGKADTGQIQQKVEDIADRSVSVQTSEDPSTGEKKLVLT 502

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
               + ++  +  +++               T  V P I  + ++  ++ +I+S + +++
Sbjct: 503 LAGKNGLSPDQQKQILNTLNKGNDNRFQTSETYAVEPYIGAKALKNSVIAIILSFLFIIV 562

Query: 683 YIWIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           YI +RF         + A+  L+ DI   L  F +F I  N   VA  LT+IGYS+ND +
Sbjct: 563 YIRLRFSALGGLAAGVTAVLALMHDICIVLFVFGIFRIPLNDAFVAVTLTIIGYSINDTI 622

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA----VWGGSVI 794
           V+YDR+R++        +  +L+D S  ETLGRS+ T+    +    +     V+    I
Sbjct: 623 VLYDRIREHRNTMKRKGTLAELVDLSTTETLGRSINTAFTVILCAFIILAASIVYQMESI 682

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F++P+  G+V    SSI IAAP+ ++  +   K  
Sbjct: 683 TKFSLPLLAGLVSGCYSSICIAAPLWVWWEEQVQKRK 719



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/139 (12%), Positives = 42/139 (30%), Gaps = 17/139 (12%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+N    + +   +  + + +A+                    +  G+D+RGG   V E 
Sbjct: 1   MKNKKLNIWIALGVIFLFVYLAVFGCGG--------GIKGMRDMRFGIDIRGGVEAVFEP 52

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFAD-----SRFKENI 111
               +      L+M  + + + L  + I     ++ +    I + F           E  
Sbjct: 53  AGTKEKPTKAELEMAREVIETRLDAQNILDREVTVDEKAGNIIVRFPWKSDEKDFDPETA 112

Query: 112 ADKVTLFLQGVNSKLNVDP 130
             ++    +      +   
Sbjct: 113 IQELGQMAELTFRGPDGTV 131


>gi|325662333|ref|ZP_08150942.1| hypothetical protein HMPREF0490_01681 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086136|ref|ZP_08335218.1| hypothetical protein HMPREF0987_01521 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471335|gb|EGC74558.1| hypothetical protein HMPREF0490_01681 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406295|gb|EGG85809.1| hypothetical protein HMPREF0987_01521 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 713

 Score =  284 bits (725), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 189/707 (26%), Positives = 326/707 (46%), Gaps = 31/707 (4%)

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
              KN+ +         +  Q       S  +  ++  +++R++Q    E+T+ + G  R
Sbjct: 34  GSAKNITLGLDLAGGVSITYQAKDKNPTSEQMSDTIYKLQKRVEQYST-EATVYQEGDDR 92

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           I I++PG  D +++   LG    + F                             E  V 
Sbjct: 93  INIEIPGVTDANKILDELGKPGSLVFQDS--------------------------EGNVV 126

Query: 249 ISGIHLNGATANFDPKTH---KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
           + G  +  A+A          + +V++   + G  +F + T +N+GK +A+V DG+ ++ 
Sbjct: 127 LEGTDVKTASAKTTQDEMNNKEYIVELILTKDGTDKFAKATAENLGKQIAIVYDGKTISN 186

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           PV+   I  G+A I G  + E A  LA+ +R G L ++L  +    VGA LG ++I    
Sbjct: 187 PVVQSEIDGGQAYIDGMASYEEAENLASTIRIGGLQLELEELRSNVVGAQLGEEAISTSL 246

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A   GL ++++FM ++Y   G  +  ++ +   LTL LL+    TLTLP IAGIVL IG
Sbjct: 247 LAGAIGLAIVLVFMCIVYLLPGFASSIALIIYTGLTLVLLNAFNITLTLPGIAGIVLSIG 306

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +AVD+N+++  R+REE    ++V  +L +GF +A S I D NIT LIA +VL   G G+V
Sbjct: 307 MAVDANVIIFARVREELAAGRAVKSALRIGFQKALSAIIDGNITTLIAALVLGLKGTGSV 366

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           +GFA T+ L +++SMFTA+ I R ++  +                  +           A
Sbjct: 367 KGFAQTLALGVVVSMFTALFITRIIIFSLYAIGFRDVKFYGAKKTTKVRNFLGKKAVCFA 426

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
               + +  L  +            Y ++F GG    V  N    +  + S +  +    
Sbjct: 427 ISGVIILGGLGIMGYHAAKGQGAFKYSLEFMGGTSTNVTFNEDYSIKEIDSKVVPVVEKI 486

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
               N   +K            S+         K  +       ++  +E +   +S E+
Sbjct: 487 TKDANVQTQKVDGSNAVIIKTRSLDLEEREAFNKAMVDNFDVDESLITSENISSTVSSEM 546

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
               +V ++I+   ML+YIW RFK   FA  A+  L+ D+   + F+ +  I    T +A
Sbjct: 547 RSDAVVALLIATACMLLYIWFRFKDVRFATSAVIALLNDVLFVVVFYGVARISVGNTFIA 606

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            +LT++GYS+N  +V++DR+R+ +K+   +     L+++ I+ETL RS+YT+   F+ V+
Sbjct: 607 CILTMVGYSINSTIVIFDRIREELKVQKRNEDLATLVNRCISETLTRSIYTNFTTFVMVV 666

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + + G S +  FA P+  GIV    SSI I   +   +     K  
Sbjct: 667 ILFILGVSSVKEFAAPLMVGIVGGTFSSITITGALWYIMRTKIQKKK 713



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 81/180 (45%), Gaps = 4/180 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +VG ++  E I   ++   I    +L+++ I +       +   LI+    TL    
Sbjct: 229 RSNVVGAQLGEEAISTSLLAGAIGLAIVLVFMCIVY-LLPGFASSIALIIYTGLTLVLLN 287

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F I   L  +A ++  IG +V+  V+++ R+R+ +       + +  +     + L   
Sbjct: 288 AFNITLTLPGIAGIVLSIGMAVDANVIIFARVREELAA---GRAVKSALRIGFQKALSAI 344

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+ L + + G   +  FA  +A G+VV+  +++FI   I+  +Y    ++ +
Sbjct: 345 IDGNITTLIAALVLGLKGTGSVKGFAQTLALGVVVSMFTALFITRIIIFSLYAIGFRDVK 404



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 18/144 (12%), Positives = 46/144 (31%), Gaps = 9/144 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           M+ +   W +I  +++  +     +  F                 I+LGLDL GG  +  
Sbjct: 1   MKKSRGVWSLIATTLLIVLLGFTTIVGFGKG-------KIGSAKNITLGLDLAGGVSITY 53

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           +  + +  +  +     +L+  +++        ++  ++I +          I D++   
Sbjct: 54  QAKDKNPTSEQMSDTIYKLQKRVEQYSTEATVYQEGDDRINIEIPGVTDANKILDELGKP 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKE 142
              V      +         T   
Sbjct: 114 GSLVFQDSEGNVVLEGTDVKTASA 137


>gi|313897325|ref|ZP_07830868.1| export membrane protein SecD [Clostridium sp. HGF2]
 gi|312957695|gb|EFR39320.1| export membrane protein SecD [Clostridium sp. HGF2]
          Length = 763

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 182/697 (26%), Positives = 328/697 (47%), Gaps = 43/697 (6%)

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
                    A+ +S+E   +R+D +G++E  I   G +RI +QL G ++  + R+++ +T
Sbjct: 51  EGKKLPSMTAVAKSVE---KRVDVLGVNEPEITVEGDNRIRVQLAGVKNADQARRVISST 107

Query: 210 AKMSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           A ++F  V      +S      G   + D+ G   +     +            F   T 
Sbjct: 108 ANLTFRDVNDNLLMDSTVLQEGGASVMYDNYGKPIVSLKLSD---------QKKFYEVTQ 158

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           K     S   +           +         + + ++A  +++ I S  AQISG+FT E
Sbjct: 159 KVSQMGSGSNLMVAWLDFNPDTDSYAKEKDQKNPKFISAATVSEGINSTSAQISGSFTKE 218

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  L  ++ +GSLP+K++      V AD G ++  +   A   G+ LI+LFMI+ Y   
Sbjct: 219 EATELKDLINSGSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLP 278

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           GL++  ++   V +   + + +GA  TL  IA +VLG+G+A DSNIL  ERI++     +
Sbjct: 279 GLISAVTLATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALYSGR 338

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           SV  +   G S+++ TIFD+ +T  I  ++L+  G G+V+GFA  + +S + ++   + +
Sbjct: 339 SVKTAFYEGSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIILIVFV 398

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIP------------DCIAIQFMRARFWGVGISI 554
            + ++  ++    +         +   +P                  F++   + +  S+
Sbjct: 399 TKFLLSLLVGSGWLNDKLSWFGVKKAHVPDVSKGQERFYFGFFKNFDFVKNAKYFIIASV 458

Query: 555 LFSICSICLLFTHGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
              +  +  +   G+      N+GIDF  G +L V ++  +    +   L+SL I   S 
Sbjct: 459 TVLVIGVGCMAFQGMKGNGILNWGIDFTSGTKLTVQSDTAISRDKLNDQLKSLGINASSI 518

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
           +    + N          D      V   +KK            N  +V P I +EL+R 
Sbjct: 519 KINGEKDNVANIFVKDAIDEHKMDTVKAGLKK------TYQHDVNDNVVTPVIGQELVRS 572

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I+  I++ I +LIYI IRFKW +A+  I  LI D+   L   A+F +E N   +A +LT
Sbjct: 573 AILISILAWIGVLIYISIRFKWDYAISGIVGLIHDVFFVLAACAIFRLEVNTEIIAVLLT 632

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYT----TSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           +IGYS+N+ +VV+DR+R  MK       T   +R+++++++  T  RS+ +++   + V+
Sbjct: 633 VIGYSINNSIVVFDRIRDEMKGRKLATTTKAEYREIVNEALQRTATRSILSTLTTILPVV 692

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +  +G S I  F + +  GI   A SS+F+AA +  
Sbjct: 693 CLLFFGSSAIRIFCLALFIGIACGAGSSLFVAAQLWY 729



 Score =  100 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 85/260 (32%), Gaps = 6/260 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
              G   +    +   D        +      IS        N               T 
Sbjct: 163 MGSGSNLMVAWLDFNPDTDSYAKEKDQKNPKFISAATVSEGINSTSAQISGSFTKEEATE 222

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + +++      +    + + +  V          + ++   I    +++++ + ++    
Sbjct: 223 LKDLINS--GSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLP-G 279

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L +  TL   +      +   G  F L+ +AA++  +G + +  ++ ++R++  +    +
Sbjct: 280 LISAVTLATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALY---S 336

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             S +    +  +++        +  FI  L + + G   +  FA  +    +      +
Sbjct: 337 GRSVKTAFYEGSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIILIV 396

Query: 814 FIAAPILLFIYDWRAKNARI 833
           F+   +L  +      N ++
Sbjct: 397 FVTKFLLSLLVGSGWLNDKL 416



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 60/497 (12%), Positives = 136/497 (27%), Gaps = 19/497 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +  +V + +++  + L+           +   PS   +  + LGLDL+GG  ++ EV
Sbjct: 1   MKKSRLVVFVITVLTILTLI-----------VTCTPSV--RKNMKLGLDLQGGFEILYEV 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLF 118
              +      +   +  +   +   G+    +  +  N+I +  A  +  +     ++  
Sbjct: 48  SPLEGKKLPSMTAVAKSVEKRVDVLGVNEPEITVEGDNRIRVQLAGVKNADQARRVISST 107

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                  +N +   +  V        ++        V     +Q       +      S 
Sbjct: 108 ANLTFRDVNDNLLMDSTVLQEGGAS-VMYDNYGKPIVSLKLSDQKKFYEVTQKVSQMGSG 166

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           S +               ++  +      + A +S      +    G           D 
Sbjct: 167 SNLMVAWLDFNPDTDSYAKEKDQKNPKFISAATVSEGINSTSAQISGSFTKEEATELKDL 226

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                                       + ++           F  +     G   AV L
Sbjct: 227 INSGSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLPGLISAVTL 286

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              V    +I  A+ +          +   G+ A         IK  +   R+V      
Sbjct: 287 ATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALYSGRSVKTAFYE 346

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            S         A +   +  +I+     G V  F+  L V     ++ ++  T  L S+ 
Sbjct: 347 GSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIILIVFVTKFLLSLL 406

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF---SRAYSTIFDSNITALIATV 475
                +   +    +    + + ++  +  +      F     A   I  S    +I   
Sbjct: 407 VGSGWLNDKLSWFGVKKAHVPDVSKGQERFYFGFFKNFDFVKNAKYFIIASVTVLVIGVG 466

Query: 476 VLFFFGGGAVRGFAITM 492
            + F G          +
Sbjct: 467 CMAFQGMKGNGILNWGI 483


>gi|309775426|ref|ZP_07670429.1| protein-export membrane protein SecDF [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916815|gb|EFP62552.1| protein-export membrane protein SecDF [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 763

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 187/697 (26%), Positives = 331/697 (47%), Gaps = 43/697 (6%)

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
                    A+ +S+E   +R+D +G++E  I   G +RI +QL G ++  + R+++ +T
Sbjct: 51  EGKKLPSMTAVAKSVE---KRVDVLGVNEPEITVEGDNRIRVQLAGVKNADQARRVISST 107

Query: 210 AKMSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           A ++F  V      +S      G   + D+ G   +     +            F   T 
Sbjct: 108 ANLTFRDVNDNLLMDSTVLQEGGASVMYDNYGKPIVSLKLSD---------QKKFYEVTQ 158

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           K     S + +           +         + + ++A  +++ I S  AQISG+FT E
Sbjct: 159 KVSQMGSGNNLMVAWLDFDANTDSYAKEKNSENPKFISAATVSEGINSTSAQISGSFTKE 218

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  L  ++ +GSLP+K++      V AD G ++  +   A   G+ LI+LFMI+ Y   
Sbjct: 219 EATELKDLINSGSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLP 278

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           GL++  ++   V +   + + +GA  TL  IA +VLG+G+A DSNIL  ERI++     +
Sbjct: 279 GLISAVTLATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALYSGR 338

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           +V  +   G S+++ TIFD+ +T  I  ++L+  G G+V+GFA  + +S + ++   + +
Sbjct: 339 TVKTAFYEGSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIVLIVFV 398

Query: 507 VRAMMIF------------IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554
            + ++                  KK +  D++     F         F++   + +  SI
Sbjct: 399 TKFLLSLLVKSGLLNDKLSWFGVKKNQVPDVSKGQERFYFGFFKDFDFVKNAKYFIIASI 458

Query: 555 LFSICSICLLFTH------GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                 +  +          LN+GIDF  G +L V +++ +    +   L+SL I   S 
Sbjct: 459 TVLAIGVGCMTFQGVKGNGILNWGIDFTSGTKLTVQSDKAISKDQLNDQLKSLGINASSI 518

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
           +    + N          D  A  +V + +KK            N  +V P I +EL+R 
Sbjct: 519 KINGEKDNIANVFVKDAIDENAMDKVKDSLKK------TYQHDVNDNVVTPIIGQELVRS 572

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I+  I++ I +LIYI IRFKW +A+  I  LI D+   L   A+F +E N   +A +LT
Sbjct: 573 AILISILAWIGVLIYISIRFKWDYAVSGIVGLIHDVFFVLAACAIFRLEVNTEIIAVLLT 632

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYT----TSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           +IGYS+N+ +VV+DR+R  MK       T   +R +I++++  T  RS+ +++   + V+
Sbjct: 633 VIGYSINNSIVVFDRIRDEMKGRKLATTTKEDYRAIINEALQRTATRSILSTLTTILPVV 692

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +  +G S I  F + +  GI   A SS+F+AA +  
Sbjct: 693 CLLFFGSSAIRVFCLALFIGIACGAGSSLFVAAQLWY 729



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/260 (10%), Positives = 85/260 (32%), Gaps = 6/260 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
              G   +    +   +         S     IS        N               T 
Sbjct: 163 MGSGNNLMVAWLDFDANTDSYAKEKNSENPKFISAATVSEGINSTSAQISGSFTKEEATE 222

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + +++      +    + + +  V          + ++   I    +++++ + ++    
Sbjct: 223 LKDLINS--GSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLP-G 279

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L +  TL   +      +   G  F L+ +AA++  +G + +  ++ ++R++  +    +
Sbjct: 280 LISAVTLATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALY---S 336

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             + +    +  +++        +  FI  L + + G   +  FA  +    +      +
Sbjct: 337 GRTVKTAFYEGSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIVLIV 396

Query: 814 FIAAPILLFIYDWRAKNARI 833
           F+   +L  +      N ++
Sbjct: 397 FVTKFLLSLLVKSGLLNDKL 416



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/426 (10%), Positives = 115/426 (26%), Gaps = 19/426 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +  +V + S++  + L+           +   PS   +  + LGLDL+GG  ++ EV
Sbjct: 1   MKKSRLVVFVISVLTILTLI-----------VTCTPSI--RKNMKLGLDLQGGFEILYEV 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLF 118
              +      +   +  +   +   G+    +  +  N+I +  A  +  +     ++  
Sbjct: 48  SPLEGKKLPSMTAVAKSVEKRVDVLGVNEPEITVEGDNRIRVQLAGVKNADQARRVISST 107

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                  +N +   +  V        ++        V     +Q       +      S 
Sbjct: 108 ANLTFRDVNDNLLMDSTVLQEGGAS-VMYDNYGKPIVSLKLSDQKKFYEVTQKVSQMGSG 166

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK---VLPNNSKKGFMFGVRFLRD 235
           + +               ++ +       + A +S          +              
Sbjct: 167 NNLMVAWLDFDANTDSYAKEKNSENPKFISAATVSEGINSTSAQISGSFTKEEATELKDL 226

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +     V+   + S         N   +T           M     +      I     
Sbjct: 227 INSGSLPVKMSEKYSNAVTADYGINAFSETMLAGGIGIALIMLFMILYYRLPGLISAVTL 286

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                 V        A+ +     +    +  A     +          +    +    +
Sbjct: 287 ATYVFIVFLIYNAMGAVFTLSGIAALVLGVGMAADSNILTFERIKDALYSGRTVKTAFYE 346

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S S      A V   +  ++  ++  G     A   I   +   + ++ +    L+L 
Sbjct: 347 GSSKSFITIFDAQVTTFICALILYMMGTGSVKGFATMLIVSTISTIVLIVFVTKFLLSLL 406

Query: 416 SIAGIV 421
             +G++
Sbjct: 407 VKSGLL 412


>gi|325832053|ref|ZP_08165150.1| export membrane protein SecD [Eggerthella sp. HGA1]
 gi|325486374|gb|EGC88826.1| export membrane protein SecD [Eggerthella sp. HGA1]
          Length = 898

 Score =  282 bits (721), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 182/787 (23%), Positives = 334/787 (42%), Gaps = 83/787 (10%)

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             +     L       + +     +   V +  +E+S  II  R++ +G SE+ +Q  G+
Sbjct: 41  PQEKINQGLDIQGGLSVVLTAKSTDGADVTNDDMEKSRAIIESRVNALGASEAVVQVQGT 100

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED- 245
            +IL+Q+PG  +       +G T K+ F ++     +            ++G        
Sbjct: 101 DQILVQIPGLTNTEDALNTIGKTGKLEFARLDSFTDEDAKTKIENGQYGNEGTVSDDLGV 160

Query: 246 ------------------KVEISGIHLN-GATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                                ++G  +           +    V+I+ D  GA+ F + T
Sbjct: 161 LTLPTGETQHLKVEDGMYTPIVTGADITKVDIGKPSETSTDYAVNITLDAEGAKAFADAT 220

Query: 287 R--DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
           +        + ++LD  V +AP +   IP G  QI+G ++++ A  +  +L +GSLP+  
Sbjct: 221 KELAPTKGKIVIILDNEVQSAPAVQSEIPDGNVQITGGYSLDEAKAMQTVLESGSLPVSF 280

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
              + + VG  LG D++  G    + GL +++L+++  Y   GL+   ++ +  +L L +
Sbjct: 281 EYAQSQTVGPTLGQDALASGVLVALIGLAVVMLYLLFFYRGLGLITAAAMIVFAVLYLGI 340

Query: 405 LSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           L+ L      +L+L  IAGIVL IG+A DS+IL  ER REE R  +SV  +   G   A 
Sbjct: 341 LATLSSFGLFSLSLAGIAGIVLTIGMAADSSILTMERFREEIRMGRSVRAASVTGVRHAI 400

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAIT-----MGLSILISMFTAISIVRAMMIFII 515
            T  D+++  L++ + LFF    +V+GF +T          ++ +F A  I       I 
Sbjct: 401 VTSIDADLVTLVSALSLFFLASASVKGFGLTLALGIACDIAMMLLFKAPLIRLLAPKVIA 460

Query: 516 RYKKMKSIDIN------------------------------------------------- 526
           R+     I  +                                                 
Sbjct: 461 RHPGFWGIKDSLAASEDYAALAAAEGTSTAAAEAGEAINAAESEEAAQRAEGAAGEAAAR 520

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              +         I F+  R   +G++ +    S+ ++   GLN+GI+F GG  +     
Sbjct: 521 AARKPQGKFIKHDINFLGHRRVFLGVAAVLVCVSLAIVGVKGLNFGIEFVGGTSVSFHNT 580

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V    +R+  +     D   Q    + +    ++     +   T+    V  K+    
Sbjct: 581 GDVSTEQMRTAFDDAGEPDAVVQTTTADGDQGFLVRTTTTSAEEATQRANQVADKL---G 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
             +       +GP     +I+  ++  ++S + ++IYI IRF++   + AI  L+ D+  
Sbjct: 638 LSTDSFEVTTIGPDWGASVIQSSLIAFLVSIVLIIIYIAIRFEYKMGVTAIVALLHDLVL 697

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +G +AL G E N   +AA+LT++GYS+ D VVV+ R+  NM+      +F  + + SIN
Sbjct: 698 VMGVYALVGREVNPNTIAALLTILGYSLYDTVVVFHRINDNMQSDDIKCTFMTMANHSIN 757

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           + L R+V T++ + I VL M ++GG  +  FA  M  G+V  + SSI +A+P+       
Sbjct: 758 QVLVRTVNTTLTSLIPVLAMLLFGGETLKDFAFAMVIGLVCGSYSSIAVASPLYAMWKTR 817

Query: 827 RAKNARI 833
             +  ++
Sbjct: 818 EPRYQKL 824



 Score = 97.5 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 71/494 (14%), Positives = 147/494 (29%), Gaps = 69/494 (13%)

Query: 40  PKNRISLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ- 95
           P+ +I+ GLD++GG  +VL     D  D  N  ++     + S +   G     ++    
Sbjct: 41  PQEKINQGLDIQGGLSVVLTAKSTDGADVTNDDMEKSRAIIESRVNALGASEAVVQVQGT 100

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           ++I +        E+  + +    +   ++L+    ++                      
Sbjct: 101 DQILVQIPGLTNTEDALNTIGKTGKLEFARLDSFTDEDAKTKIENG----QYGNEGTVSD 156

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
               +       +    + G+    +      ++ I  P E        +          
Sbjct: 157 DLGVLTLPTGETQHLKVEDGMYTPIVTGADITKVDIGKPSETSTDYAVNITLDAE----- 211

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
                        G +   D+       + K+ I   +   +      +     V I+  
Sbjct: 212 -------------GAKAFADATKELAPTKGKIVIILDNEVQSAPAVQSEIPDGNVQITGG 258

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
                     T    G         +  T              +     +    +     
Sbjct: 259 YSLDEAKAMQTVLESGSLPVSFEYAQSQTVGPTLGQDALASGVLVALIGLAVVMLYLLFF 318

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
             G                              +     +++F ++  G    ++ F + 
Sbjct: 319 YRG----------------------------LGLITAAAMIVFAVLYLGILATLSSFGL- 349

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
                          +L+L  IAGIVL IG+A DS+IL  ER REE R  +SV  +   G
Sbjct: 350 --------------FSLSLAGIAGIVLTIGMAADSSILTMERFREEIRMGRSVRAASVTG 395

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
              A  T  D+++  L++ + LFF    +V+GF +T+ L I   +   +     ++  + 
Sbjct: 396 VRHAIVTSIDADLVTLVSALSLFFLASASVKGFGLTLALGIACDIAMMLLFKAPLIRLLA 455

Query: 516 RYKKMKSIDINPLS 529
                +      + 
Sbjct: 456 PKVIARHPGFWGIK 469


>gi|331002526|ref|ZP_08326044.1| hypothetical protein HMPREF0491_00906 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330410342|gb|EGG89776.1| hypothetical protein HMPREF0491_00906 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 803

 Score =  281 bits (719), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 192/686 (27%), Positives = 324/686 (47%), Gaps = 27/686 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q          +  ++  ++QR+      E+ + R G +RI I +PG  D + +   
Sbjct: 114 ITYQTVEPNPSDEDMADTIYKLQQRVQNYST-EAEVYREGGNRINIDIPGVSDANAILND 172

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    + F                    D  GN  L  D+V  +   +           
Sbjct: 173 LGKPGSLIFM-------------------DPQGNTVLTGDQVATAKAGIIDNNG-----N 208

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            + VV ++F + G++ F + T   IG+ +A++ D  V +AP +  AI  G AQI+G  + 
Sbjct: 209 SEYVVSLTFTDEGSKAFEDATAKLIGQQIAIIYDNVVYSAPTVQSAITGGNAQITGMESY 268

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA+ +R GSL ++L  +    VGA LG ++I     A + G +++ +FMI ++  
Sbjct: 269 EVAKNLASTIRIGSLSLELEELRSNVVGAKLGQEAISTSVKAAIVGFIVLAIFMIAVFLL 328

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G+ +  ++ L VIL + LLS    TLTLP IAGI+L IG+AVD+N+++  RI+EE    
Sbjct: 329 PGVASVIALSLYVILEILLLSAFEITLTLPGIAGIILSIGMAVDANVIIFTRIKEEIGLG 388

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +SV  ++++GF +A S I D N+T LIA  VL+  G G V+GFA T+ L I++SMFTA+ 
Sbjct: 389 KSVHEAINLGFKKALSAIIDGNVTTLIAAAVLYLRGSGTVKGFAQTLALGIILSMFTALF 448

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           + R ++                      I      +   A    + I+ +          
Sbjct: 449 VTRFVLTAFYNIGLESEKFYGKKLERKPIDFVGMKKITMAVSAVIIIAGIAGAGFNKAKI 508

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
               NYGIDFKGG    V  N    L  +   +  +            +K          
Sbjct: 509 GDLFNYGIDFKGGTSTNVTFNEDYSLEQISKEVVPVVESITGEAGTQTQKVEGSNEVIIK 568

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             ++      ++      +    +     E +   +S E+    +V  +I+ + ML+YIW
Sbjct: 569 TRTLTVDEREKLNSALAEKFGVDAEKITAESISAAVSTEMKADAVVATVIATVLMLLYIW 628

Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            RFK + FA  ++  L+ D+   + F+AL       T +A +LT++GYS+N  +V++DR+
Sbjct: 629 FRFKDFRFATSSVLALVHDVLVVVTFYALLRWSVGSTFIACILTIVGYSINATIVIFDRI 688

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+N K   +  +  ++I+ S+ ETL RS+Y+S+  FI +  + + G S I  FA+P+  G
Sbjct: 689 REN-KALLSRATKEEIINTSVTETLTRSIYSSLTTFIMIFVLFIMGVSSIREFALPIMVG 747

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830
           IV    SS+F+++       +     
Sbjct: 748 IVAGTYSSVFLSSIFWYIFSNKFENK 773



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 48/157 (30%), Gaps = 3/157 (1%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
             +I LGLDL GG  +  +  E +  +  +     +L+  ++         R+  N+I +
Sbjct: 99  TGKIKLGLDLAGGVSITYQTVEPNPSDEDMADTIYKLQQRVQNYSTEAEVYREGGNRINI 158

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
                     I + +      +      +    +L           +  NN +     ++
Sbjct: 159 DIPGVSDANAILNDLGKPGSLIFMDPQGNT---VLTGDQVATAKAGIIDNNGNSEYVVSL 215

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
             + E  +   D           +    ++   P  Q
Sbjct: 216 TFTDEGSKAFEDATAKLIGQQIAIIYDNVVYSAPTVQ 252


>gi|299822812|ref|ZP_07054698.1| protein-export membrane protein SecDF [Listeria grayi DSM 20601]
 gi|299816341|gb|EFI83579.1| protein-export membrane protein SecDF [Listeria grayi DSM 20601]
          Length = 756

 Score =  281 bits (717), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 188/695 (27%), Positives = 337/695 (48%), Gaps = 28/695 (4%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            N    V    +  ++  + +R++ +G++E +I   G +RI +QL G +D +  R+LL T
Sbjct: 51  ANGKGTVDKSTLSDTVSALDRRVNTLGVAEPSITIEGKNRIRVQLAGIKDQTEARKLLST 110

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           TA++SF              G   +       +   ++  ++      + + F   T + 
Sbjct: 111 TAQLSFRDADDKLMMD----GSDLVGGGAKQAFDNNNRPIVT--LKLKSASKFAKVTKEI 164

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           +      E     + +  +    K          L+AP ++Q + + + +I+G+F ++ A
Sbjct: 165 LAKAPTQENQLVIWLDHKKGQKYKEERQKEKPAFLSAPNVSQVLDTNQVEITGDFEVKEA 224

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             LA +L +G+LP+K+  V   +VGA  G D++ +   A + G++ I +FM+ +Y   G 
Sbjct: 225 KDLANLLNSGALPVKMKEVYSTSVGAQFGQDALNETVMAGLIGVLAIFIFMMAVYRFPGF 284

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           VA  ++     L L +LSLL ATLTLP IAG++LGIG+AVD+N++  ERI+EE +  +S+
Sbjct: 285 VASVTLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKIGRSI 344

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             + ++G   A+  IFD N T L+  VVLF+FG  +++GFA  + +SILIS  TA+   R
Sbjct: 345 KSAFEIGGKEAFRAIFDGNFTTLLVAVVLFYFGTSSIKGFATVLIISILISFLTAVWGSR 404

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIP-------------DCIAIQFMRARFWGVGISIL 555
            ++ F I    +         R   I                    F++     +    +
Sbjct: 405 LLLRFAIDSNFLNKRPGWFAVRKDEIYDLHEDISTFKLKTHFDRFDFVKHHRGFLWTFAV 464

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            +I  + LL    +N GIDF  G +  V A+  +  + V+ +L+ + +   +      ++
Sbjct: 465 ITIAGVILLSVFKMNLGIDFSSGTRADVTADHTLTAAAVQKDLKEINMPAETIVLQGKDQ 524

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V             +     K K           +   V P + +EL + G   + +
Sbjct: 525 KVAVVSYKGALSQQEIAKFKAEFKSKYG------HEPSISTVTPTVGKELAKNGFWALGV 578

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           ++I ++IYI IRF+ Y  + AI +L+ D      FF++F +E +LT +AAVLT+IGYS+N
Sbjct: 579 ASILLVIYIGIRFELYMGIAAILSLLFDAFVIFIFFSIFRLEVDLTFIAAVLTVIGYSIN 638

Query: 736 DKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           D +V  DR+R     MK + T       ++ ++ +T  RS+ T +    +V+ +  +G S
Sbjct: 639 DTIVTADRIRDISKQMKRFKTKEEIASSVNSALRQTFTRSINTILTVIFTVVALVAFGSS 698

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            I +F+I +  G++ +  SSIF+A  +       +
Sbjct: 699 SILNFSIALLVGLISSVFSSIFMAMQLWYVFKVRQ 733



 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 96/260 (36%), Gaps = 9/260 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
              +  + + +   +       R   +   +   +           +   ++  ++    
Sbjct: 169 PTQENQLVIWLDHKKGQKYKEERQKEKPAFLSAPNVSQVLDTNQVEITGDFEVKEAKDLA 228

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +L         +        +  VG +  ++ + + ++  +I  +A+ I++   +++  
Sbjct: 229 NLLNS-----GALPVKMKEVYSTSVGAQFGQDALNETVMAGLIGVLAIFIFMMAVYRFP- 282

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              A  TL+      L   +L      L  +A ++  IG +V+  V+ Y+R+++ +K+  
Sbjct: 283 GFVASVTLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKI-- 340

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              S +   +    E        +    +  + +  +G S I  FA  +   I+++  ++
Sbjct: 341 -GRSIKSAFEIGGKEAFRAIFDGNFTTLLVAVVLFYFGTSSIKGFATVLIISILISFLTA 399

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           ++ +  +L F  D    N R
Sbjct: 400 VWGSRLLLRFAIDSNFLNKR 419



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 80/744 (10%), Positives = 196/744 (26%), Gaps = 48/744 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +  +  L ++    G++      +                I+LGLDL+GG  ++ +V+
Sbjct: 3   KKSRIVAFLLALAIIFGVVFGTAKVVLS-------------HINLGLDLQGGFEVLYQVE 49

Query: 62  ED----DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116
                       L      L   +   G+   S+     N+I +  A  + +      ++
Sbjct: 50  PANGKGTVDKSTLSDTVSALDRRVNTLGVAEPSITIEGKNRIRVQLAGIKDQTEARKLLS 109

Query: 117 LFLQGVNSKLNVDPKKNLL--------VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168
              Q      +     +                   IV  +       +   ++ +    
Sbjct: 110 TTAQLSFRDADDKLMMDGSDLVGGGAKQAFDNNNRPIVTLKLKSASKFAKVTKEILAKAP 169

Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
            + +Q+             +   +   ++ P+ L     +    +    +  + +     
Sbjct: 170 TQENQL----VIWLDHKKGQKYKEERQKEKPAFLSAPNVSQVLDTNQVEITGDFEVKEAK 225

Query: 229 GVRFLRDSDGNQYLVEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
            +  L +S      +++    S G        N         V   F  M A   F    
Sbjct: 226 DLANLLNSGALPVKMKEVYSTSVGAQFGQDALNETVMAGLIGVLAIFIFMMAVYRFPGFV 285

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            ++       L   +L+       +P     I G      A ++        + I  +I 
Sbjct: 286 ASVTLVAYTYLVLLILSLLHATLTLPGIAGLILGIGMAVDANVITYERIKEEIKIGRSIK 345

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI-LTLALLS 406
               +G      +I+ G    +   V++  F       +  V   SI ++ +        
Sbjct: 346 SAFEIGGKEAFRAIFDGNFTTLLVAVVLFYFGTSSIKGFATVLIISILISFLTAVWGSRL 405

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LL   +    +        +  D    ++E I     K                 T    
Sbjct: 406 LLRFAIDSNFLNKRPGWFAVRKDEIYDLHEDISTFKLKTHFDRFDFVKHHRGFLWTFAVI 465

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS----IVRAMMIFIIRYKKMKS 522
            I  +I   V     G            +       A+      +      I+   K + 
Sbjct: 466 TIAGVILLSVFKMNLGIDFSSGTRADVTADHTLTAAAVQKDLKEINMPAETIVLQGKDQK 525

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           + +          +    +      +G   SI     ++         + +     + + 
Sbjct: 526 VAVVSYKGALSQQEIAKFKAEFKSKYGHEPSISTVTPTVGKELAKNGFWALGVASILLVI 585

Query: 583 ---VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              +     + ++ + S L    +  I F  F  E +             +    +    
Sbjct: 586 YIGIRFELYMGIAAILSLLFDAFVIFIFFSIFRLEVDLTFIAAVLTVIGYSINDTIVTAD 645

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR---------FKW 690
           +       +   +  E +   ++  L +     +      +   + +          F  
Sbjct: 646 RIRDISKQMKRFKTKEEIASSVNSALRQTFTRSINTILTVIFTVVALVAFGSSSILNFSI 705

Query: 691 YFALGAITTLILDITKTLGFFALF 714
              +G I+++   I   +  + +F
Sbjct: 706 ALLVGLISSVFSSIFMAMQLWYVF 729


>gi|266619977|ref|ZP_06112912.1| putative protein-export membrane protein SecDF [Clostridium
           hathewayi DSM 13479]
 gi|288868441|gb|EFD00740.1| putative protein-export membrane protein SecDF [Clostridium
           hathewayi DSM 13479]
          Length = 726

 Score =  280 bits (716), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 166/670 (24%), Positives = 290/670 (43%), Gaps = 19/670 (2%)

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
           +D+                 +      D      +      + F                
Sbjct: 55  LDRAPTEAEVTAARNIMESRLDDKNILDREVTADIDRGYVIVRFPWKSGETQFNPEAAIA 114

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLN--GATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                ++         + + G  ++      +      +  V++ F E GA++F + T  
Sbjct: 115 ELGEMANLTFRDEAGNIMLEGRDVSTSSPVESGGTGLKQYAVELHFTEEGAKKFEDATGK 174

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
             G+ + + +D  +++ PV+   I  G A I G  +   A  L+  + AG+LP  +    
Sbjct: 175 LTGQRMGIFMDDVMISNPVVKDRITGGNAIIDGMESYGEAKELSDKINAGALPYSMATRN 234

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
              +   LGS ++     A +A  VL+ +FM++ Y   G VA   +   + L L  +S+ 
Sbjct: 235 FSTISPSLGSAALDIMMGAGIAAFVLLCIFMVIKYRLPGFVACLGMAFQMCLQLLAISVP 294

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
             TLTLP IAGI+L +G+AVD+N+++NERI EE R   S+  ++  G+ RAYS++ D NI
Sbjct: 295 QYTLTLPGIAGIILSLGMAVDANVIINERIGEELRDGSSLRDAVLAGYKRAYSSVMDGNI 354

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+ I  V+L  FG G +  F  T+   I+I++   +   + +++ +++     S      
Sbjct: 355 TSAIVAVILMIFGSGPMLSFGYTLLAGIIINVVIGVYYSKVVLLSLVKEGCFSSPGWFRY 414

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   I       FM+ R   + IS          L  +G++    F GG  L       
Sbjct: 415 KKEQRIYQ-----FMKHRKVWLSISAAALFLGFLGLARNGVSLDTQFTGGTTLKYEIQEE 469

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI---TEI 645
            D   + S+L      ++S Q    +      +          +   +     +      
Sbjct: 470 TDSERLASSLGEALGRNVSVQFTREDGQGRQSMVVTFAGKEGISPQEQKQATDLIHREYG 529

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY----FALGAITTLI 701
              + +  T  V P I ++ + + I+ + ++A+ + +Y+WIRF         L A+  L+
Sbjct: 530 EMNAELSETYSVQPYIGQQALNRSIIAMGLAAVLITLYVWIRFSILSGLSAGLAAMAALV 589

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            D+    G F +F I  N   VA VLT+IGYS+ND +V+YDR+R+NM+          L+
Sbjct: 590 HDVLIVFGVFLVFAIPLNDAFVAVVLTIIGYSINDTIVIYDRIRENMRKGE-GKDIFWLV 648

Query: 762 DKSINETLGRSVYTSMAAFISVLPM----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           D S++++L RSVYTS+   I VL +      +    I  F++PM FGIV    SS+ IA+
Sbjct: 649 DMSVSQSLSRSVYTSVTTVIGVLILVAVSWYYQIPSIFEFSLPMLFGIVSGCFSSVCIAS 708

Query: 818 PILLFIYDWR 827
            +       R
Sbjct: 709 ILWALWVKKR 718



 Score = 45.1 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 61/208 (29%), Gaps = 27/208 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +   ++L  +I    +   L +                  +  G+D+RGG   V E  
Sbjct: 5   RKSLAAMLLLLVISAAVVWFGLGD-----------EIKGARDMRFGIDIRGGVEAVFEPV 53

Query: 62  EDD--FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK--ITLSFADSR-----FKENIA 112
             D       +    + + S L  + I    +    ++  + + F           E   
Sbjct: 54  GLDRAPTEAEVTAARNIMESRLDDKNILDREVTADIDRGYVIVRFPWKSGETQFNPEAAI 113

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ--SMEIIRQR 170
            ++               +   ++       +    ++    +  +A+E   + E  ++ 
Sbjct: 114 AELGEMANLTFRD-----EAGNIMLEGRDVSTSSPVESGGTGLKQYAVELHFTEEGAKKF 168

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQD 198
            D  G        +    ++I  P  +D
Sbjct: 169 EDATGKLTGQRMGIFMDDVMISNPVVKD 196


>gi|294810981|ref|ZP_06769624.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           clavuligerus ATCC 27064]
 gi|326439676|ref|ZP_08214410.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           clavuligerus ATCC 27064]
 gi|294323580|gb|EFG05223.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           clavuligerus ATCC 27064]
          Length = 763

 Score =  280 bits (715), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 193/710 (27%), Positives = 346/710 (48%), Gaps = 36/710 (5%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              I +    +   +  + A ++++E++RQR+D +G++E ++ R G  RI+++LPG +DP
Sbjct: 33  GTRIVLETRDSPTVRADADATDRTLEVLRQRVDALGVAEPSLARSGERRIVVELPGVRDP 92

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV----RFLRDSDGNQYLVEDKVEISGIHLN 255
           +   +++G TA++SFH V+          G               +L      ++G  + 
Sbjct: 93  AEAAEVIGRTAQLSFHPVVEAAPGPASGPGADGSRVLPDPETPTGFLRLGPTALTGDGVR 152

Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR-------------V 302
            A A  D  + +              +  +T +                          +
Sbjct: 153 DAEAVLDTASGRGWTVGLSFRGDGAEWARLTGEAACAAPGSPARRVAIVLDDAIVSAPAM 212

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +      IPSG AQI+G F  + A  LAA+++ G+LP+ +  VE+  VG  LG+++I 
Sbjct: 213 ERSVPCGTGIPSGSAQITGGFGADGARDLAALVKGGALPVPVTAVEQSVVGPTLGAEAIR 272

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A V GLV    F+I +Y   G +A  ++ L  +++ A +  LGATLTLP +AG VL
Sbjct: 273 ASAWAAVIGLVCTGAFIIAVYRLVGALAALALVLYGVISYAAVVALGATLTLPGLAGFVL 332

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCS-------LDMGFSRAYSTIFDSNITALIATV 475
            IG+AVD+N+L  ER REE  + +    +       L +GF +A+S + DS++T L+A  
Sbjct: 333 AIGIAVDANVLAFERAREEYARARRGRTASTDLRRPLRVGFDQAWSAVTDSHVTTLLAAG 392

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP----LSRF 531
           +LF F  G V+GF +T+ + +L S+ +A+ I R    + +R   ++            R 
Sbjct: 393 LLFVFATGPVKGFGVTLAIGVLASLVSAMVITRLFADWAVRRGPVRRRPAWTGLTVRGRV 452

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             + +    + MR R   +G  +   +C++  +   GL +G++F GG Q+   A +PVD 
Sbjct: 453 RTLLERRPPRLMRYRRRWLGGCLGLLLCALAGIGVRGLEFGVEFTGGRQIQYTAGQPVDA 512

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
              R  +          Q                       R  E ++  +  +    T+
Sbjct: 513 DRARQAVADAGFPRAVVQKTGERG-------ITVRTGELDNRGQETIRAALGTVAGEVTV 565

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  E +GP +  EL R  ++ + ++  A L+Y+  RF+W FA+ A+  +  D+   +G F
Sbjct: 566 ERDETIGPSLGSELRRHALIALGVAVAAQLLYLTARFRWTFAVAAVAAMAQDVLLVVGLF 625

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A  G   +   +AA+LT++GYSVND VVV DR+R+  +      ++ +L D+++ +TL R
Sbjct: 626 AWLGKPVDSVFLAALLTVVGYSVNDTVVVLDRLRELRRSAPRG-TWPELADRAVAQTLPR 684

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +V T M A   ++ +AV GG  +  F++ +  G+V+  +S++F A P+++
Sbjct: 685 TVNTGMGALFVLVSLAVLGGDSLADFSVALLAGVVLGTASTVFTAMPLVV 734



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 54/214 (25%), Gaps = 10/214 (4%)

Query: 43  RISLGLDLRGGSHLVLEV-DEDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-I 98
              LGLDLRGG+ +VLE  D               + LR  +   G+   S+ +   + I
Sbjct: 23  PPRLGLDLRGGTRIVLETRDSPTVRADADATDRTLEVLRQRVDALGVAEPSLARSGERRI 82

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
            +     R     A+ +    Q     +             +    +   +     +   
Sbjct: 83  VVELPGVRDPAEAAEVIGRTAQLSFHPVVEAAPGPASGPGADGSRVLPDPETPTGFLRLG 142

Query: 159 AIEQSMEIIRQRIDQIGISEST-IQRLGSHRILIQLPGEQDPSRLRQLLGTTAK-----M 212
               + + +R     +  +         S R                  G+ A+     +
Sbjct: 143 PTALTGDGVRDAEAVLDTASGRGWTVGLSFRGDGAEWARLTGEAACAAPGSPARRVAIVL 202

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
               V     ++    G      S          
Sbjct: 203 DDAIVSAPAMERSVPCGTGIPSGSAQITGGFGAD 236


>gi|262340882|ref|YP_003283737.1| bifunctional preprotein translocase subunit SecD/SecF
           [Blattabacterium sp. (Blattella germanica) str. Bge]
 gi|262272219|gb|ACY40127.1| bifunctional preprotein translocase subunit SecD/SecF
           [Blattabacterium sp. (Blattella germanica) str. Bge]
          Length = 904

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 200/803 (24%), Positives = 369/803 (45%), Gaps = 61/803 (7%)

Query: 60  VDEDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIAD 113
           V+   F+   ++       + LRS + + G+   ++++    N+I +  +  +  + I +
Sbjct: 126 VEIKTFLKEKIELSIISIQNILRSRIDQFGVLQPNIQRIKNSNRILIELSGIKDVDRIKN 185

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +    +    +     +        +        +    ++    I+      R+  + 
Sbjct: 186 ILEKKAELHFFETYNFQEVFPYFKKID--------KFFHKKLNKSFIDVLNISTRKSNNI 237

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +G               +             L      + F      N+    +F V+  
Sbjct: 238 VGFI-------HKKHKKVISEFLNSIEATEALPYNLHNVKFLWGNSINNNFLQLFAVKIN 290

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            +        E    ++G  +  A  +F P   +  V+I  ++ G +++   T  NIGK 
Sbjct: 291 NE--------ETYSYLNGDVVTRAYKSFGPFN-EISVNIKMNQEGTKKWKIFTEKNIGKN 341

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +A+VLD  V   P++   I +G +QISG+F+I+ +  L  +L AG LP  +NIV+   VG
Sbjct: 342 IAIVLDDFVYANPLVQSVITNGMSQISGHFSIQESNDLVNVLNAGELPTSVNIVQTEIVG 401

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG +SI+KG  + +  L  +  +MI  Y   GL +D  +  N+I    +L  + A LT
Sbjct: 402 PSLGKESIHKGMKSFLIALFFVFFWMIFHYSIPGLYSDIILIFNIIFIFGILISINAVLT 461

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM--GFSRAYSTIFDSNITAL 471
            P IAGI+L + +++D+NIL+ E+I+E  R   S+F S+     F  A S+I D  IT L
Sbjct: 462 FPGIAGIILTLAMSMDANILIYEKIKENIRNKISIFTSIHNSYTFQGALSSIIDGQITTL 521

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           +  ++LF+FG G ++GF+ T+ + I+IS+FT+  + R ++ + ++  +  +         
Sbjct: 522 LCGIILFYFGTGPIQGFSTTLIIGIIISVFTSTCLGRLLLEWHLKKYQNITFGNKMFINV 581

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           F     I   F+  R W   IS +  I S+  +   GLN G+DF GG    +L +R +  
Sbjct: 582 FHKIQNIQWDFLSKRKWYYMISSILLIISVFSMVFKGLNLGLDFVGGRSYVILFDRKMIP 641

Query: 592 SVVRSNLESLQIGD-----ISFQNFDGEKNFLVRLQYQPGDSV--AQTRVLEMVKKKITE 644
             +   L    +        + + F  E    +  +Y+  +        +L+ +   + +
Sbjct: 642 EKISEILSKTFLEKGRPSFPNVKTFGNENQLKIVTKYKIWEENHKIDEEILQKMFISLKD 701

Query: 645 IVPLSTIQNT---------------EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688
             P+                     E V P I++++  K  + +IIS I + +YI+IRF 
Sbjct: 702 YFPIHFHFRDFKNIEKDKPLGVLSSEKVEPTIAKDMKDKSFISIIISLIGIFLYIFIRFQ 761

Query: 689 KWYFALGAITTLILDITKTLGFFALFG-----IEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           KW F LGA+ +LI D    LG ++ F      +E + + +AA+LT+IGYS+ND V+VYD+
Sbjct: 762 KWQFGLGAVVSLIHDSVIVLGIYSFFYGKFPILEIDQSFIAALLTIIGYSINDTVIVYDQ 821

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           +R  +   T+S + +  I+  I  +L R++ TS+   + +  + ++GG+ + SF + +  
Sbjct: 822 IR-KISKKTSSSTMKQTINTGIVNSLTRTINTSLITLLVISIIFLFGGAPLRSFMLALFL 880

Query: 804 GIVVAASSSIFIAAPILLFIYDW 826
           G+ +   SSIFIA  I+      
Sbjct: 881 GVSIGTYSSIFIAPSIVYDFCKK 903



 Score = 45.8 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 13/187 (6%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
           K  ++LGLDL GG  ++L+V E   +  F +   +    F+K         ++  N   L
Sbjct: 33  KKTLNLGLDLEGGISIILDVSEKYLLKKFSENSQNPF--FIKALEYADQKKKENPNADYL 90

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
           SF  + F           L    S  ++   +  +        ++ +     +++    I
Sbjct: 91  SFFINFF---------DQLNIHLSSPDLFGNRFNIEKIDSNSSNVEIKTFLKEKIELSII 141

Query: 161 EQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
                I+R RIDQ G+ +    +   S+RILI+L G +D  R++ +L   A++ F +   
Sbjct: 142 SIQN-ILRSRIDQFGVLQPNIQRIKNSNRILIELSGIKDVDRIKNILEKKAELHFFETYN 200

Query: 220 NNSKKGF 226
                 +
Sbjct: 201 FQEVFPY 207


>gi|229825162|ref|ZP_04451231.1| hypothetical protein GCWU000182_00513 [Abiotrophia defectiva ATCC
           49176]
 gi|229790534|gb|EEP26648.1| hypothetical protein GCWU000182_00513 [Abiotrophia defectiva ATCC
           49176]
          Length = 737

 Score =  279 bits (713), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 195/686 (28%), Positives = 338/686 (49%), Gaps = 18/686 (2%)

Query: 154 QVISHAIEQSMEIIRQRI-DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
           +    A E +  I + R+  +I  +ES + + G +R+++ +P  +D   + + LG+T  +
Sbjct: 61  KAKPTATEMADTIEKMRLRAEIFSTESEVYQEGLNRVVVDIPDVKDADAVLKQLGSTGSL 120

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
            F  V  N S     + +    +    +  V             +         + +V++
Sbjct: 121 QFIPVEGNISFVDGKYKLNKSIEELVQEKKVSVDGADIATAKAQSRKQESGVGIEYIVEL 180

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
             +  GA +F + T++N+GK +A+V DG V++AP +   I  GKAQISG  ++E A  LA
Sbjct: 181 ELNAKGANKFAKATKENLGKQIAIVYDGNVISAPTVQTVITEGKAQISGQSSMEEAERLA 240

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
           +++R G+LP++L  V    VGA LG  ++     A + G  ++ LFMI +Y   GL +  
Sbjct: 241 SIIRVGALPLELKEVRSSVVGAKLGDTALETSLLAGLIGFAIVFLFMIFVYKIPGLASSL 300

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++   V++ L LL LL  TLTLP IAGIVL IG+AVD+N+++  RI+EE    +SV  ++
Sbjct: 301 ALIAYVVIELVLLQLLQITLTLPGIAGIVLSIGMAVDANVIIFTRIKEEIGLGKSVRSAI 360

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
             GF +A S I D NIT +IA +VL  FG G ++GFA T+ L I+ISMFTA+ I + ++ 
Sbjct: 361 GNGFKKALSAIIDGNITTIIAAIVLGIFGTGTIKGFAYTLALGIIISMFTALFITKFLLF 420

Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG---- 568
                     +  +    +    D     F++       +S++     I  +  +     
Sbjct: 421 SFYD------LGFDTEKYYGTKVDKENKPFLKFAPKAYILSLIVIGVGIATMIFNAAGGK 474

Query: 569 --LNYGIDFKGGIQLGVLANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              +Y ++F GG    V+     V  +    N  +  I   +           V ++ + 
Sbjct: 475 GAFDYALEFSGGTSTEVVFEGGKVPGNDEIRNFVNGIIPSSNADVTQIVGEDAVVIKTKS 534

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
            +   +T++ E   +K             E +   +S E+ R  ++ VI + I MLIYI 
Sbjct: 535 LNEEERTKLRESFVEKYK---VSKDNITNENISGAVSGEMKRSALMSVIAATICMLIYII 591

Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           IRF+   F   A+  LI D+      +AL  +    T +A +LT++GYS+N  ++++DR+
Sbjct: 592 IRFRNVAFGTSAVLALIHDVLVVATLYALIRMNVGNTFIACMLTIVGYSINATIIIFDRI 651

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+NM       +  +++DKSI +T  RS+ T++   I V  + + G S +  F++P+  G
Sbjct: 652 RENMAEKKRGETVAEIVDKSITQTFSRSINTTVTTLIMVAVLFIMGVSSVREFSLPIIVG 711

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  A SSI I   +       + + 
Sbjct: 712 LICGAYSSICITGTLWYSFVRKKIEK 737



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 11/82 (13%), Positives = 28/82 (34%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             I  GLDL GG  +  E  +       +    +++R   +         ++  N++ + 
Sbjct: 41  RGIKRGLDLAGGVSITYETVKAKPTATEMADTIEKMRLRAEIFSTESEVYQEGLNRVVVD 100

Query: 102 FADSRFKENIADKVTLFLQGVN 123
             D +  + +  ++        
Sbjct: 101 IPDVKDADAVLKQLGSTGSLQF 122


>gi|225377732|ref|ZP_03754953.1| hypothetical protein ROSEINA2194_03383 [Roseburia inulinivorans DSM
           16841]
 gi|225210409|gb|EEG92763.1| hypothetical protein ROSEINA2194_03383 [Roseburia inulinivorans DSM
           16841]
          Length = 719

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 208/695 (29%), Positives = 333/695 (47%), Gaps = 28/695 (4%)

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
                +  Q   +   +  +  ++  +++R+D      S  Q     RI +++PG QD +
Sbjct: 46  SGGVSITYQVVDENPSAEDMSDTIYKLQKRVDSYSTEASVYQVG-DDRITVEIPGVQDAN 104

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
            + + LG    + F     +    G M                            GATA 
Sbjct: 105 EILEDLGNPGSLEFQMPDGSVFMTGDMV-----------------------EDAQGATAT 141

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
                 + +V +   + GA+ F EVT +NIGK L +V DG  ++ P +  AI  G+AQI+
Sbjct: 142 DRYGNKQYIVSLKLTDEGAKIFGEVTSENIGKNLPIVYDGETISYPQVQSAITGGEAQIT 201

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
           G  + E A  LA  +R GSL ++L+ +E   VGA LGS +I     A   GL ++++FMI
Sbjct: 202 GMSSFEEADNLATQIRIGSLSLQLSELESSVVGAQLGSQAIASSLKAGAIGLAIVMVFMI 261

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           V+Y   G+ A  ++ +   L +A L L   TLTLP IAGI+LGIG+AVD+N++V  RIRE
Sbjct: 262 VMYAVPGIAASLALAIYTTLVIATLYLFDITLTLPGIAGIILGIGMAVDANVIVFARIRE 321

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E    +SV  S+ +GF +A S I D NIT LIA+VVL   G G V+GFA T+ + I++S+
Sbjct: 322 EIATGKSVQTSMKIGFQKAMSAILDGNITTLIASVVLMALGSGTVKGFAYTLMIGIILSL 381

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
           FTA+ + R ++  +                   I               +  + L S+  
Sbjct: 382 FTAMVVTRYILYSLYALGLKSEKLYGRAKERKSIDFIGKKAVFFTISGIIIAAGLISMGV 441

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                   LNYG+DF GG        + + +  + +++           +    K     
Sbjct: 442 HSATEGKALNYGLDFMGGTSTTADFGKDMTIEDIENDIVPYVEKVTGDSDVQATKVEGTT 501

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                  +++     E+           ++   ++ +   IS E+    +  VI+S I M
Sbjct: 502 QVTIKTRTLSLDERQELEDTLAENCDVDASTITSQSISSTISGEMRSDALKAVIVSCIFM 561

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           L+YIW RFK   FA  AI  L+ D+   +  +AL  I    T +A VLT++GYS+ND +V
Sbjct: 562 LLYIWFRFKDIRFAASAILALVHDVLVVITVYALVRISVGSTFIACVLTIVGYSINDTIV 621

Query: 740 VYDRMRKNMKLYTTSIS---FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           ++DR+R+N+ L T   +    R++ +KS+ +TL RS+ TS+  FI V+ + + G + I  
Sbjct: 622 IFDRIRENLALKTGKQTAEELREVANKSLTQTLSRSINTSITTFIMVVMLYILGVASIRD 681

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           F++P+  G+V  A SSI IA  +   +     KN 
Sbjct: 682 FSLPLMAGLVCGAYSSICIATELWYVMKVHLGKNK 716



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 102/252 (40%), Gaps = 11/252 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V +        +  + E++    +      GE        ++  D++A    +  +  +
Sbjct: 165 EVTSENIGKNLPIVYDGETISYPQVQSAITGGEAQITGMSSFEEADNLATQIRIGSLSLQ 224

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           ++E+          +VG ++  + I   +    I    +++++ + +     + A   L 
Sbjct: 225 LSELES-------SVVGAQLGSQAIASSLKAGAIGLAIVMVFMIVMYAVP-GIAASLALA 276

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           +  T  +    LF I   L  +A ++  IG +V+  V+V+ R+R+ +    T  S +  +
Sbjct: 277 IYTTLVIATLYLFDITLTLPGIAGIILGIGMAVDANVIVFARIREEIA---TGKSVQTSM 333

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                + +   +  ++   I+ + +   G   +  FA  +  GI+++  +++ +   IL 
Sbjct: 334 KIGFQKAMSAILDGNITTLIASVVLMALGSGTVKGFAYTLMIGIILSLFTAMVVTRYILY 393

Query: 822 FIYDWRAKNARI 833
            +Y    K+ ++
Sbjct: 394 SLYALGLKSEKL 405



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 7/147 (4%)

Query: 1   MRNNPWLVILYSMICCI-GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+ +   VIL  ++    GL       L  + +           I LGLDL GG  +  +
Sbjct: 1   MKKSKAAVILAVILAAFVGLAYYASIILSSTGVGE------DMSIPLGLDLSGGVSITYQ 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           V +++     +     +L+  +          +   ++IT+     +    I + +    
Sbjct: 55  VVDENPSAEDMSDTIYKLQKRVDSYSTEASVYQVGDDRITVEIPGVQDANEILEDLGNPG 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIV 146
                  +        +    +  +  
Sbjct: 115 SLEFQMPDGSVFMTGDMVEDAQGATAT 141


>gi|326792540|ref|YP_004310361.1| protein-export membrane protein SecD [Clostridium lentocellum DSM
           5427]
 gi|326543304|gb|ADZ85163.1| protein-export membrane protein SecD [Clostridium lentocellum DSM
           5427]
          Length = 725

 Score =  278 bits (710), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 176/672 (26%), Positives = 311/672 (46%), Gaps = 18/672 (2%)

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
           +D+   S+            +      D             + F                
Sbjct: 54  LDRAATSDELNAARSVIETRLDNKNILDREVTIDKKNGRIIVRFPWKSDEAEFNPEKAIS 113

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                +       E  + I G  +  + A  D +T++ +V + F+  GA+ F E T   I
Sbjct: 114 ELGETARLTFRDSEGNILIEGKDVKSSRAVMDQQTNQYMVQLVFNAEGAKLFEEATAKLI 173

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           G+ L + +D   ++ P++NQ I  G+  I G FT++ A  LA  + +G+LP  +      
Sbjct: 174 GQQLFIFMDETYISGPMVNQKISGGEGVIEGTFTLDQAQDLAEKISSGALPFSMTATSHN 233

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            +   LGS ++     A +    LI LFM+V Y   G ++  ++ L + + +  LS+   
Sbjct: 234 TISPSLGSGALKVMVMAGITAFALICLFMLVFYRLPGFISCIALTLQLAVQILALSVPQF 293

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAGI+L +G+ VD+N+++NERI EE R  +S+  +L  G+SRA++++FD NIT 
Sbjct: 294 TLTLPGIAGIILSLGMGVDANVIINERIGEELRSGKSLPLALKSGYSRAFASVFDGNITT 353

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            I  ++L   G G +  F  T+ + I+++    I     +++ +I +K  ++I       
Sbjct: 354 AIVAIILMALGSGTMLSFGYTLLVGIVLNFIAGIYTTHKLLLSLINFKAFRNI-----KL 408

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
           + L  +   I F + R+    ISI+  +  I   F +G+     FKGG  L       ++
Sbjct: 409 YHLPKERKTIPFYKKRWGLYSISIVLMVIGIASCFINGIALDTTFKGGAMLTYTYTGDLN 468

Query: 591 LSVVRSNLESLQIGDISFQNF---DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           +  V     S    +++ Q       ++  +V          A+ +V             
Sbjct: 469 VEDVSRLATSTLNRNVTGQITEDLGNKQQKIVLSLAGTDSLNAKDQVKLDEALDKAYAAN 528

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILD 703
              +  + +V P I +E + + I+ ++I+   +++Y+W+RFK          A+  L  D
Sbjct: 529 KLELSESYMVEPYIGKETLIRSIMSLVIALALIVVYVWVRFKKIGGLSAGAMALVALGHD 588

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I      F +  I  +   +A  LT+IGYS+ND VV+YDR+R+NM L + ++    L+D 
Sbjct: 589 ILVIFFTFVVLRIPLDTNFIAVALTIIGYSINDTVVIYDRIRENMALNSKNMEV--LMDD 646

Query: 764 SINETLGRSVYTSMAAFISVLPMAV----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           S+ +TL RS+ TS+   ISVL M +    +G   I  FA+PM  G++    SS+ +A P+
Sbjct: 647 SLTQTLTRSINTSVTTSISVLIMYIFAYVFGIESIKVFALPMMMGVLSGCFSSVCLAGPL 706

Query: 820 LLFIYDWRAKNA 831
            +   + +  N 
Sbjct: 707 WVSWKNSKKFNK 718



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 78/254 (30%), Gaps = 29/254 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           M+   +   +   I    L++A+            P       +  G+D+RGG   + E 
Sbjct: 1   MKAKKYTFFIIVAIIIGLLILAVFGA---------PHVKGAKEMRFGIDIRGGVEAIYEP 51

Query: 60  VDED-DFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRF-----KENI 111
           VD D    +  L      + + L  + I     ++ +   +I + F           E  
Sbjct: 52  VDLDRAATSDELNAARSVIETRLDNKNILDREVTIDKKNGRIIVRFPWKSDEAEFNPEKA 111

Query: 112 ADKVTLFLQGVNSKLNVDP----------KKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
             ++    +        +           +  +   T +  + +V +            +
Sbjct: 112 ISELGETARLTFRDSEGNILIEGKDVKSSRAVMDQQTNQYMVQLVFNAEGAKLFEEATAK 171

Query: 162 QSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
              + +   +D+  IS     Q++     +I+     D ++      ++  + F     +
Sbjct: 172 LIGQQLFIFMDETYISGPMVNQKISGGEGVIEGTFTLDQAQDLAEKISSGALPFSMTATS 231

Query: 221 NSKKGFMFGVRFLR 234
           ++      G   L+
Sbjct: 232 HNTISPSLGSGALK 245


>gi|293400504|ref|ZP_06644649.1| protein-export membrane protein SecDF [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305530|gb|EFE46774.1| protein-export membrane protein SecDF [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 762

 Score =  278 bits (709), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 181/711 (25%), Positives = 333/711 (46%), Gaps = 40/711 (5%)

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              I+   + +D     ++    E + +R+D +G++E  I   G++RI +QL G ++  +
Sbjct: 40  GFEILYEVSPLDGKKMPSMSAVAESVNKRVDVLGVNEPDITVEGNNRIRVQLAGVKNADQ 99

Query: 202 LRQLLGTTAKMSFHKVLP---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
            R+++ +TA ++F  V      ++      G     D  GN  +     + S        
Sbjct: 100 ARRVISSTANLTFRDVNDNLLMDASVLKEGGASVTTDQYGNPVVSLKLADQS-------- 151

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQ 318
             F   T K         +           +           + ++A  + + I S  AQ
Sbjct: 152 -KFYEVTKKVAAMGDGQNLMVAWLDFDQATDSYAAEKTKEKPKYISAASVKEGINSTSAQ 210

Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378
           ISGNF+ + A  L  ++ +GSLP+K+       V AD G D+      A   G+ LI+LF
Sbjct: 211 ISGNFSKDEANELKDLINSGSLPVKMVESYSNAVTADYGIDAFSTTMMAGAVGIALIMLF 270

Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           MI+ Y   G+++  +I   V +   + +L+GA  TL  IA +VLG+G+AVDSNIL  ERI
Sbjct: 271 MILYYRLPGVISAITIASYVFVVFLINNLMGAVFTLSGIAALVLGVGMAVDSNILTFERI 330

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
           R+     +SV  +   G S+++ TIFD+  T  I+ ++LF FG G+V+GFA  + +S + 
Sbjct: 331 RDALYSGRSVKTAFYEGSSKSFVTIFDAQFTTFISALILFIFGTGSVKGFATMLIVSTIS 390

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA------------IQFMRAR 546
           ++   + + + ++  ++   K+         +   IP                  F+   
Sbjct: 391 TLLVIVFVAKFLLKMLVDSGKLDDKKSWFGVKKNQIPSVANGESRFYYGRFKGFDFVGKA 450

Query: 547 FWGVGISILFSICSICLLFTHGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
            + +  S+   + +I  +  +G       N+GIDF  G ++ V ++  +    +++ L+S
Sbjct: 451 KYFIFTSLTIMVIAIGCMGFNGFKGDGILNFGIDFTSGTKITVQSDSAIKADELKTQLKS 510

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           L I   S +    +         +  ++    +    +K             +   V P 
Sbjct: 511 LGIHANSVKINGDKNEIAHVFVKEAVNTSTMEKAKTALKATYK------HDVSDSTVTPV 564

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           I REL+RK IV  +++ I ++IYI +RFKW +AL  I  LI D+   L F A+F +E N 
Sbjct: 565 IGRELVRKAIVISVLAWIGVMIYISLRFKWDYALSGIIALIHDVFIILCFCAIFRLEVNT 624

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMR----KNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             +A +L +IGYS+N+ +VV+DR+R    +N       + ++++++ ++  T  RS+ ++
Sbjct: 625 EIIAVMLAIIGYSINNSIVVFDRIRDQVKENRHEKLDQVKYKEIVNIALQNTATRSILST 684

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               + V+ +   G + I +F + +  G++  A SS+FIAA +   +    
Sbjct: 685 FTTVLPVICLLGLGSNAIFTFCLALFIGLIAGAGSSLFIAAQVWYQLRMRE 735



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/421 (10%), Positives = 117/421 (27%), Gaps = 24/421 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +  +V   +++  + +++     +             K+ + LGLDL+GG  ++ EV
Sbjct: 1   MKKSRLVVFGITVLTILAVIVTCSGMI-------------KDNMRLGLDLQGGFEILYEV 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLF 118
              D      +   ++ +   +   G+    +  +  N+I +  A  +  +     ++  
Sbjct: 48  SPLDGKKMPSMSAVAESVNKRVDVLGVNEPDITVEGNNRIRVQLAGVKNADQARRVISST 107

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                  +N +   +      E   S+   Q     V     +QS      +        
Sbjct: 108 ANLTFRDVNDNLLMD-ASVLKEGGASVTTDQYGNPVVSLKLADQSKFYEVTKKVAAMGDG 166

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM-------SFHKVLPNNSKKGFMFGVR 231
             +                + ++ +    + A +       S       +  +       
Sbjct: 167 QNLMVAWLDFDQATDSYAAEKTKEKPKYISAASVKEGINSTSAQISGNFSKDEANELKDL 226

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
               S   + +      ++  +   A +         +  I    +   R   V      
Sbjct: 227 INSGSLPVKMVESYSNAVTADYGIDAFSTTMMAGAVGIALIMLFMILYYRLPGVISAITI 286

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                V+         +        A + G      + IL       +L    ++     
Sbjct: 287 ASYVFVVFLINNLMGAVFTLS-GIAALVLGVGMAVDSNILTFERIRDALYSGRSVKTAFY 345

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
            G+     +I+          +++ +F       +  +   S    +++ + +   L   
Sbjct: 346 EGSSKSFVTIFDAQFTTFISALILFIFGTGSVKGFATMLIVSTISTLLVIVFVAKFLLKM 405

Query: 412 L 412
           L
Sbjct: 406 L 406


>gi|158424518|ref|YP_001525810.1| preprotein translocase subunit SecD [Azorhizobium caulinodans ORS
           571]
 gi|158331407|dbj|BAF88892.1| SecD export membrane protein [Azorhizobium caulinodans ORS 571]
          Length = 535

 Score =  277 bits (707), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 213/534 (39%), Positives = 317/534 (59%), Gaps = 9/534 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  +     L  ++   G+L A+PN LP S+L   PS +  +R++LGLDL+GGSH++LEV
Sbjct: 2   LHFSRLKTALILLVTAFGILFAVPNLLPASVLQHLPSWLANSRVTLGLDLQGGSHILLEV 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D         +   D++R  L+   IG   +      I L   D    +N   ++     
Sbjct: 62  DSAAVRKERAEQVRDDVRRVLRDAKIGYTGLAIRDTTIQLRLRDPNDTQNALTELRKLAT 121

Query: 121 GVNSKL---NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            V +     N       + +  + +I++ L++  I+  +  A++QS+EIIR+RIDQ+G  
Sbjct: 122 PVVNAFLGGNTGENDITVSSGADGQITVSLTEAGINARVRSAVDQSIEIIRRRIDQLGTV 181

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
           E TIQR G+ RIL+Q+PG QDP RL+ LLG TAK+SF  V  + S +  M G        
Sbjct: 182 EPTIQRQGADRILVQVPGLQDPQRLKALLGQTAKLSFRMVDQSMSPQQAMEGRPPPESEV 241

Query: 237 ----DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
               +G  YLVE +V +SG  L  A   FD  + +P+V   F+  GA+RF   T++ +G+
Sbjct: 242 LQSAEGAPYLVEKQVRVSGEDLTDAQPGFDQNSRQPIVTFRFNNNGAKRFAATTQEAVGR 301

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
           P A+VLD +V++APVI + I  G  QISGNFT++ A  LA +LRAG+LP  L +VEER V
Sbjct: 302 PFAIVLDNQVISAPVIREPILGGSGQISGNFTVQQANDLAILLRAGALPAPLKVVEERTV 361

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG DSI  G  A      L+ +FM+ +YG +G  A  ++ +++ L  AL SLLGATL
Sbjct: 362 GPSLGQDSIQAGKTAAYVAAALVTVFMLAVYGLFGAFALVALAIHITLMFALQSLLGATL 421

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAG+VL IG+AVDSN+++ ERIR+E R+ +S   ++D GFS A  TI D+N+T+L 
Sbjct: 422 TLPGIAGVVLTIGMAVDSNVVIFERIRDEAREGRSAIAAIDKGFSFALGTILDANLTSLA 481

Query: 473 ATVVLFFFGGG-AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             V+LF  GG   VRGFA+T  L +L ++FTA ++ R M+   +++++   + I
Sbjct: 482 TAVILFLLGGSGPVRGFAVTYILGLLTTVFTAYTLTRLMIALWVKWRRPAKLPI 535



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 81/177 (45%), Gaps = 6/177 (3%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+ G     ++A  + +++   +   F   A+  L + IT      +L G  
Sbjct: 362 GPSLGQDSIQAGKTAAYVAAALVTVFMLAVYGL-FGAFALVALAIHITLMFALQSLLGAT 420

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A V+  IG +V+  VV+++R+R   +      S    IDK  +  LG  +  ++
Sbjct: 421 LTLPGIAGVVLTIGMAVDSNVVIFERIRDEARE---GRSAIAAIDKGFSFALGTILDANL 477

Query: 778 AAFISVLPMAVWGG-SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +  + + + + GG   +  FA+    G++    ++ +    +++ ++    + A++
Sbjct: 478 TSLATAVILFLLGGSGPVRGFAVTYILGLLTTVFTA-YTLTRLMIALWVKWRRPAKL 533


>gi|313906023|ref|ZP_07839376.1| protein-export membrane protein SecD [Eubacterium cellulosolvens 6]
 gi|313469136|gb|EFR64485.1| protein-export membrane protein SecD [Eubacterium cellulosolvens 6]
          Length = 766

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 194/714 (27%), Positives = 344/714 (48%), Gaps = 41/714 (5%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
               KN+           +  +          ++ ++  ++QR+ Q    E+ + + G +
Sbjct: 33  TGAMKNIRTGLDLSGGVSITYEATESAPSQKDMDDTIYKLQQRVTQYST-EANVYQQGLN 91

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI +++PG  D + + + LG    + F                             E K 
Sbjct: 92  RINVEIPGVSDANEILEALGKPGSLVFTDA--------------------------EGKT 125

Query: 248 EISGIHLNGATA---NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            + G  +  A         +  + +V++   + GA++F E T  N+GK +A+V DG+ ++
Sbjct: 126 VLEGSDIADAQGVSGTDQQQQRQYLVELVMTKEGAKKFQEATAANVGKQIAIVYDGKTVS 185

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           AP +   I  GKAQI G  ++E A  LA+ +R GSL ++L  V    VGA LG D++   
Sbjct: 186 APTVKSEISGGKAQIDGMSSLEEAQQLASFIRIGSLKLELKEVYSNVVGASLGQDALSGS 245

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             A + G+ ++VLFMIV +   G  A +++ L  +L LA ++    TLTLP IAG++L I
Sbjct: 246 VLAGLIGVAIVVLFMIVFFRISGFAAGWALVLFTLLDLAFMNAFDITLTLPGIAGVILTI 305

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+++  R+REE     +V  SL  GF +A+S IFD  IT LIA  VL+  G G+
Sbjct: 306 GMAVDANVIIYTRVREEIAAGTTVNRSLRAGFHKAFSAIFDGQITTLIAAAVLYVLGTGS 365

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           ++GFA T+ +   +SMFTA+++ R +   +                  +I          
Sbjct: 366 IQGFATTLAIGTGLSMFTALAVSRWISYALYGAGFRSPALYGKTEHKRIIDFVGKRAIPF 425

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                + +S+   I         GLNY +DF GG    V     + L+ + + ++ +   
Sbjct: 426 IIAVLLVLSVPVGIGINRANINKGLNYSLDFIGGTATNVDFGEDLSLADLDAKVKPVVQK 485

Query: 605 ---DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              +   Q    +    V ++ +  D   +  + E + K+  ++         E +   I
Sbjct: 486 VTGNKDIQFQKIKGGTSVIIKTRELDLAKRDELNEALAKEFKKVDVS--KIQAENISSTI 543

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNL 720
           S E+ R  I+ VII+ +AML YI++RF+   FA  A+  L+ DI+  L ++         
Sbjct: 544 SGEMRRNAIIAVIIAVLAMLFYIFVRFRDIRFATSAVIALVHDISIVLCYYVWTRASVGS 603

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T +A +LT++GYS+N  +V++DR+R+N+       S+R +++ S+ +TL RS+Y+++   
Sbjct: 604 TFIAVMLTILGYSINATIVIFDRVRENLSTMQ-GESYRSIVNASVTQTLTRSLYSNLTTL 662

Query: 781 ISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           I++L + +     G S +  F++P+  G+V    SS+F+  P+   +     K 
Sbjct: 663 ITILSLFIMASVRGISSVAEFSLPIIVGLVAGCFSSVFVTGPLWFIMKTRNGKK 716



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 4/121 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             I  GLDL GG  +  E  E       +     +L+  + +        +Q  N+I + 
Sbjct: 37  KNIRTGLDLSGGVSITYEATESAPSQKDMDDTIYKLQQRVTQYSTEANVYQQGLNRINVE 96

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                    I + +      V      D +   ++  ++   +  +S  +  Q   + +E
Sbjct: 97  IPGVSDANEILEALGKPGSLVF----TDAEGKTVLEGSDIADAQGVSGTDQQQQRQYLVE 152

Query: 162 Q 162
            
Sbjct: 153 L 153


>gi|225568132|ref|ZP_03777157.1| hypothetical protein CLOHYLEM_04205 [Clostridium hylemonae DSM
           15053]
 gi|225163085|gb|EEG75704.1| hypothetical protein CLOHYLEM_04205 [Clostridium hylemonae DSM
           15053]
          Length = 723

 Score =  276 bits (706), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 171/696 (24%), Positives = 309/696 (44%), Gaps = 42/696 (6%)

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           +    +   +  + +S    +   D+    +     +           E DP      LG
Sbjct: 58  TPPASELEAARNVMESRLDAKNITDREVTVDKKEGHIIVRFPWKSDEKEFDPESAISELG 117

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
            TAK++F                               K+ I G ++  +    + +T  
Sbjct: 118 ETAKLTFRDPD--------------------------GKILIEGQNVKNSQPVKNTETGG 151

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V +SFD  G + F E T    G+ L + +D R+++APV+ Q I  G+A I+G  +I+ 
Sbjct: 152 YEVQLSFDGKGTKEFAEATGALTGRQLQIYMDDRLISAPVVQQQITGGEAVINGMDSIDA 211

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  L+  + AG+LP  +       +   LG++++     A     VLI +FMIV Y   G
Sbjct: 212 ARALSEKINAGALPFSMETTNYNTISPALGNNALRAMVTAAAVAFVLICIFMIVSYRLPG 271

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           +++  ++   + L +  LSL   TLTLP IAG++L  G+AVD+NI+++ERI+EE R+   
Sbjct: 272 VISCLTLIFQMSLQILALSLPQYTLTLPGIAGLILSAGMAVDANIIISERIQEELRRGTG 331

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           V  ++  G+  A+S++ D N+T     ++L  FG G +  F  T+   ++I++   + + 
Sbjct: 332 VRLAVKNGYKNAFSSVLDGNVTTAAVALILMIFGSGTMLSFGYTLFTGVIINLLAGVWMS 391

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
           R M+   +RY+       +    F    +   + F   R      + +  +    +   +
Sbjct: 392 RFMLTSAVRYQV-----CSREQMFRRKKEQRPLHFAAGRRKIYVFTAVVLLTGAAVSGAN 446

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFLVRLQYQP 625
           G+     F GG  L        D     + +E L    +S Q  +        + L    
Sbjct: 447 GIRLDTQFTGGAILRYTYTGEADTKQAGAAVEKLVKRPVSTQITEDPLTGQKKLILTLAG 506

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
              ++     ++++    +     T+  T +V P I  + ++     V +S++ +++YIW
Sbjct: 507 NKGISPDEQKKVLEALGQDKEAAYTLSETSVVEPYIGAKALKNSAAAVGLSSLFIVLYIW 566

Query: 686 IRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           IRF         + A+  L+ D    L  F +  I  N   VA  LT+IGYS+ND +V+Y
Sbjct: 567 IRFSALSGLSAGITAVIALLHDAAIVLFVFGIGKIPVNDAFVAVTLTIIGYSINDTIVLY 626

Query: 742 DRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGS 796
           DR+R+N+ +          L+D+SI ET+GRSV T+    +    + V+        I  
Sbjct: 627 DRIRENLARGGRKKEGLCRLVDRSITETIGRSVKTAFTTALCAAVVLVFACVYDIGSIKV 686

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           FA+P+  G++    SS+ IA P+ +   ++R +  +
Sbjct: 687 FALPLLAGVISGCYSSVCIAGPLWVTWKEFRERRTK 722



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 69/254 (27%), Gaps = 28/254 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+N    + L   I    +L A                     +  G+D+RGG   V E 
Sbjct: 1   MKNKKNHIWLALFIIAAFVLFAFFGCGNDLKG--------VRDMRFGIDIRGGVEAVFEP 52

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI--QNKITLSFAD-----SRFKENI 111
               +      L+   + + S L  + I    +     +  I + F           E+ 
Sbjct: 53  AGVKETPPASELEAARNVMESRLDAKNITDREVTVDKKEGHIIVRFPWKSDEKEFDPESA 112

Query: 112 ADKVTLFLQGVNSKLN-------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
             ++    +      +        + K +  V  TE     V    +       A     
Sbjct: 113 ISELGETAKLTFRDPDGKILIEGQNVKNSQPVKNTETGGYEVQLSFDGKGTKEFAEATGA 172

Query: 165 EIIRQRI----DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
              RQ      D++  +    Q++     +I      D +R          + F     N
Sbjct: 173 LTGRQLQIYMDDRLISAPVVQQQITGGEAVINGMDSIDAARALSEKINAGALPFSMETTN 232

Query: 221 NSKKGFMFGVRFLR 234
            +      G   LR
Sbjct: 233 YNTISPALGNNALR 246


>gi|154248229|ref|YP_001419187.1| preprotein translocase subunit SecD [Xanthobacter autotrophicus
           Py2]
 gi|154162314|gb|ABS69530.1| protein-export membrane protein SecD [Xanthobacter autotrophicus
           Py2]
          Length = 535

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 214/534 (40%), Positives = 325/534 (60%), Gaps = 9/534 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  +        +   +GLL ALPN LPQS L   PS +  +R++LGLDL+GGSH++LEV
Sbjct: 2   LHFSRLKTTAILLTIAVGLLFALPNVLPQSALAHLPSWLASSRVTLGLDLQGGSHILLEV 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D         +   DE+R  L+ + IG  ++      ++L   D    +    ++     
Sbjct: 62  DGSALRKERTEQVRDEIRRVLRDQKIGYSNLAVRDTSVSLRLRDPADTQKAVAELRKLAV 121

Query: 121 GVNSKLNVDPK---KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            V + L  +       L+ ++++  +++ LS+  ++  +  A+EQS+EIIR+RIDQ+G  
Sbjct: 122 PVTNALFGNSSGELDLLVSSSSDGAVTVQLSEAGLNARMRSAVEQSIEIIRRRIDQLGTV 181

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF----- 232
           E  IQR G  RIL+Q+PG QDP RL+ LLG TAK+SF  V  + S +  + G        
Sbjct: 182 EPNIQRQGLDRILVQVPGLQDPQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRPPPDSEV 241

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
           L+  DG  YLVE +V +SG  L  A   FD  + +P+V   F+  GARRF   T+D +G+
Sbjct: 242 LQGQDGQPYLVEKQVRVSGEDLVDAQPGFDHNSREPIVSFRFNNNGARRFAATTQDAVGR 301

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
           P A+VLD +V++APVI + I  G  QISG+FT++ A  LA +LRAG+LP  L +VEER V
Sbjct: 302 PFAIVLDNQVISAPVIREPILGGSGQISGSFTVQQANDLAILLRAGALPAPLKVVEERTV 361

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG+DSI+ G  A      L+ +FMI +YG +GL A  ++ ++++L  +L S+LGATL
Sbjct: 362 GPSLGADSIHAGKVAAYVATALVAVFMIAVYGLFGLFALVALAVHIMLMFSLQSILGATL 421

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           T+P IAG+VL IG+AVDSN+++ ER+R+E R+ +S   ++D GF  A  TI D+N+T+L 
Sbjct: 422 TMPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTILDANVTSLA 481

Query: 473 ATVVLFFFGGG-AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             V+LF  GG   VRGFA+T  L +L +MFTA ++ R M+ + +++++   + I
Sbjct: 482 TAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMIAYWVKWRRPAKLPI 535



 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 77/177 (43%), Gaps = 6/177 (3%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I  G V   ++   + +++   +   F L A+  L + I       ++ G  
Sbjct: 362 GPSLGADSIHAGKVAAYVATALVAVFMIAVYGL-FGLFALVALAVHIMLMFSLQSILGAT 420

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             +  +A V+  IG +V+  VV+++RMR   +      S    IDK     LG  +  ++
Sbjct: 421 LTMPGIAGVVLTIGMAVDSNVVIFERMRDEARE---GRSAISAIDKGFVNALGTILDANV 477

Query: 778 AAFISVLPMAVWGG-SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +  + + + + GG   +  FA+    G++    ++ +    +++  +    + A++
Sbjct: 478 TSLATAVILFLMGGSGPVRGFAVTYILGLLTTMFTA-YTLTRLMIAYWVKWRRPAKL 533


>gi|325265271|ref|ZP_08131996.1| protein-export membrane protein SecD [Clostridium sp. D5]
 gi|324029450|gb|EGB90740.1| protein-export membrane protein SecD [Clostridium sp. D5]
          Length = 718

 Score =  276 bits (706), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 166/694 (23%), Positives = 315/694 (45%), Gaps = 49/694 (7%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ------DPSRLRQL 205
            +   +  ++ +  +I  R+D   I +  +     H  +I     +      +P      
Sbjct: 56  TETPSAQDLDAARTVIENRLDAQNILDREVTVDKEHGNIIVRFPWKSDEKEFNPESAIAE 115

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG TAK++F                                V + G ++  ++   + +T
Sbjct: 116 LGETAKLTFRDAD--------------------------GNVLVEGKNVADSSVVKNQQT 149

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +  V + FD+ GA  F + T   +G+ + + +D   ++ P++ +AI  G+A I+G  + 
Sbjct: 150 GEYEVSLQFDKTGAEDFADATEKLVGQSMGIYMDEERISNPMVKEAIKGGEAVINGMSSQ 209

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  L+  + AG+LP  L       +   LGS ++   T A     +L+ LFMI+ Y  
Sbjct: 210 EEADSLSEKINAGALPFSLKTTNYNTISPTLGSGALKAMTTAAAVAFILVCLFMILYYRL 269

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G +A  ++   + L + +LS+   TLTLP IAG++L +G+AVD+N++++ERI EE +K 
Sbjct: 270 PGTIACLALIFQMSLQVLVLSVPQYTLTLPGIAGLILSLGMAVDANVIISERIGEELQKG 329

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            S+  ++  G+  A+S++ D N+T     V+L FFG G +  F  T+   +LI++   + 
Sbjct: 330 TSIRSAVRRGYKNAFSSVLDGNVTTAAVAVILMFFGSGTMLSFGYTLLTGVLINLVAGVW 389

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           + R M+  +I Y   + + +  + +   +     I F+  R      ++   +    +  
Sbjct: 390 LSRVMLSSVILYPGFQKLKLFRVKKERKV-----IDFLGKRRAIFIFTVAVLVTGSIISA 444

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ---NFDGEKNFLVRLQ 622
             G+     F GG+ L        D      ++E++    +S Q   +F   +  LV   
Sbjct: 445 VRGVTLDTQFTGGVILKYTCEGTPDTEKAAKDIENILNRPVSAQAGEDFVSGQEKLVLNL 504

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                   Q +   + + +  +         T  V P I    ++  ++ ++++A+ +++
Sbjct: 505 GGNQGISPQEQEKVLKELQSMQPELNYQSSETYAVEPYIGARALKNSVIAIVLAALFIVV 564

Query: 683 YIWIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           YI +RF     +   +  +  L+ D+      F +  I  N   V+  LT+IGYS+ND +
Sbjct: 565 YIRLRFSALSGFSAGVSGVIALLHDVFIVFLVFGVCKIPLNDAFVSVTLTIIGYSINDTI 624

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVI 794
           V+YDR+R++M  +T       L+++SI ETLGRS+ T+    + V  + V+        I
Sbjct: 625 VLYDRIREHMSGHTK-EGLVPLVNRSITETLGRSINTAFTTVLCVAIVLVFAVIYNIESI 683

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             FA+PM  G++    SSI +A  I +     + 
Sbjct: 684 KIFALPMLIGMISGCYSSICVAGAIWVTWKGRKK 717



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/175 (9%), Positives = 44/175 (25%), Gaps = 20/175 (11%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + N W+V+    +     +  L +                  +  G+D+RGG   V E +
Sbjct: 5   KRNIWIVLCVIAVFLYTAIFGLGS-----------EIKGAMDMRFGIDIRGGVEAVFEPE 53

Query: 62  --EDDFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRF-----KENIA 112
              +      L      + + L  + I     ++ +    I + F           E+  
Sbjct: 54  GVTETPSAQDLDAARTVIENRLDAQNILDREVTVDKEHGNIIVRFPWKSDEKEFNPESAI 113

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            ++    +      + +             +    +      +            
Sbjct: 114 AELGETAKLTFRDADGNVLVEGKNVADSSVVKNQQTGEYEVSLQFDKTGAEDFAD 168


>gi|218509532|ref|ZP_03507410.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           etli Brasil 5]
          Length = 592

 Score =  273 bits (696), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 237/588 (40%), Positives = 347/588 (59%), Gaps = 8/588 (1%)

Query: 225 GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
                V +  D     YLV+     S  ++       D +T    +    D  G +R  E
Sbjct: 12  PATSQVLYSLDDPPVPYLVDRTAFASAGNMVDIQPVVDAQTQDTSIAYRLDAEGTKRLAE 71

Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
           VT  NIGK LA+V D +V++APVI+ AI +G+ +IS NF+ +    LA MLRAG+LP  L
Sbjct: 72  VTGQNIGKHLAIVFDDQVMSAPVIDVAITNGEGRISANFSEDGVRDLAVMLRAGALPATL 131

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
             VEER+V    G +SI  G  A +  +VL+   MI LY   G++A  S+F N+IL +A 
Sbjct: 132 TSVEERSVSPTFGGESIVSGFVAGLVAVVLVAALMIALYRILGVIAVVSLFFNLILIIAA 191

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           LSL GATLTLP IAGIVL +G+AVDSN+LV ERIREE +   S   ++  GFSRA++TI 
Sbjct: 192 LSLAGATLTLPGIAGIVLIVGMAVDSNVLVYERIREEEKTAHSFAEAVGRGFSRAFATIV 251

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           D+N+T  IA V+LFF G  A+RGFA+T+ + IL ++FTA ++ R+++   +  ++ + + 
Sbjct: 252 DANVTIFIAAVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRRPRHLP 311

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            + L+    + +   I+FM  R +    S   S+ ++    T GL  GIDF GG  + V 
Sbjct: 312 KSVLTH---LFEHANIRFMGIRRYVFTASAAISLIAMAAFATVGLQLGIDFTGGSLIEVT 368

Query: 585 ANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           A +   D++ +RS L  L +G++  +   G  N  +R+  Q G   A+     +V+ ++ 
Sbjct: 369 AKQGNADIADLRSRLNDLNLGEVGVERTGGPANARIRIASQGGGENAEQSAATLVRGELE 428

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   +  E+VGP IS EL     + +  +  A+L+YIWIRF+W FA+GAI   + D
Sbjct: 429 A---DYDFRRVEVVGPAISGELTMMATLVIAPALAAILLYIWIRFEWQFAVGAIIATLHD 485

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   LG F L GIEFNLT++AAVLT++GYS+ND VVVYDRMR N+K YT  +    LID 
Sbjct: 486 VIIMLGLFVLTGIEFNLTSIAAVLTIVGYSLNDTVVVYDRMRVNLKRYTK-MPLPILIDA 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
           SIN+TL R+V T+    +++L + ++GG V+ SFA  M FG+ +   S
Sbjct: 545 SINQTLSRTVLTAATTLLALLALYLFGGDVMRSFAFAMLFGVALGTFS 592



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 77/175 (44%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V P    E I  G V  +++ + +   +   ++    + A+ +L  ++   +   +L G
Sbjct: 138 SVSPTFGGESIVSGFVAGLVAVVLVAALMIALYRIL-GVIAVVSLFFNLILIIAALSLAG 196

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++ ++G +V+  V+VY+R+R+      T+ SF + + +  +      V  
Sbjct: 197 ATLTLPGIAGIVLIVGMAVDSNVLVYERIREE---EKTAHSFAEAVGRGFSRAFATIVDA 253

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   I  FA+ +A GI+    ++  +   I+      R   
Sbjct: 254 NVTIFIAAVILFFLGSEAIRGFAVTLAVGILTTVFTAFTLTRSIVAVWLARRRPR 308


>gi|257790739|ref|YP_003181345.1| protein-export membrane protein SecD [Eggerthella lenta DSM 2243]
 gi|257474636|gb|ACV54956.1| protein-export membrane protein SecD [Eggerthella lenta DSM 2243]
          Length = 900

 Score =  272 bits (695), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 172/787 (21%), Positives = 322/787 (40%), Gaps = 83/787 (10%)

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             +     L       + +     +   V +  +E+S  II  R++ +G SE+ +Q  G+
Sbjct: 40  PQEKINQGLDIQGGLSVVLTAKSTDGQAVSNDDMEKSRAIIESRVNALGASEAVVQVQGT 99

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
            +IL+Q+PG  +       +G T K+ F ++     +             +G        
Sbjct: 100 DQILVQIPGLTNTEDALNTIGKTGKLEFARLDSFTDEDVKTKIENGQASGEGTVSDDLGV 159

Query: 247 VEI-SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN---------------- 289
             + +G   +    +          +I+  ++G R                         
Sbjct: 160 ATLPTGETQHLKVEDGTYTPIVTGSNITKVDIGKRSDTSTDYAVNISLDSAGAAAFAEAS 219

Query: 290 -----IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
                    + ++LD  V +AP     IP G  QI+GN++++ A  L  +L +GSLP+  
Sbjct: 220 KDLAPTKGKIVIILDNEVQSAPATQSEIPDGNIQITGNYSLDEAKALQTVLESGSLPVSF 279

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
              + + VG  LG D++  G    + GL +++L+++  Y   G +   ++ +  +L L +
Sbjct: 280 EYAQSQTVGPTLGQDALASGVLVALIGLAVVMLYLLFFYRGLGAITAAAMIVFAVLYLGI 339

Query: 405 LSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           L+ L      +L+L  IAGIVL IG+A DS+IL  ER REE R  +SV  +   G   A 
Sbjct: 340 LATLSSFGLFSLSLAGIAGIVLTIGMAADSSILTMERFREEIRMGRSVRAASVTGVKHAI 399

Query: 461 STIFDSNITALIATVVLFF--------FGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
            T  D+++  L++ + LFF        FG     G    + + +L        +   ++ 
Sbjct: 400 VTSVDADLVTLVSALSLFFLASASVKGFGLTLALGIVCDIAMMLLFKAPLIRVLAPKVIA 459

Query: 513 FIIRYKKMKS----------------------------------------------IDIN 526
               +  +K                                                   
Sbjct: 460 RHPGFWGIKDSLAASKDYAALAAAEGTSVAAAEAGETINPTESEEAAERREGAAGEAAAK 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              +         I F+  R   +G++ +    S+ ++   GLN+GI+F GG  +     
Sbjct: 520 AARKPRGKFIKHDINFLGYRRVFLGVAAVLVCVSLAIVGVKGLNFGIEFVGGTSVSFHGT 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V    +R+  +     D   Q  + + +    ++     +   T+    V   +    
Sbjct: 580 GDVTTEQMRTAFDQAGEPDAVVQTTNADGDEGYLVRTTTTSAEEATQRANQVADSL---G 636

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
             +       +GP     +I+  ++  ++S + ++IYI IRF++   + AI  L+ D+  
Sbjct: 637 LSTDSFEVTTIGPDWGASVIQSSLIAFLVSIVLIIIYIAIRFEYKMGVTAIVALLHDLVL 696

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +G +AL G E N   +AA+LT++GYS+ D VVV+ R+  NM+      +F  + + SIN
Sbjct: 697 VMGVYALVGREVNPNTIAALLTILGYSLYDTVVVFHRINDNMQSDDIKCTFMTMANHSIN 756

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           + L R++ T++ + I VL M ++GG  +  FA  M  G+V  + SSI +A+P+       
Sbjct: 757 QVLVRTINTTLTSLIPVLAMLLFGGETLKDFAFAMVIGLVCGSYSSIAVASPLYAMWKTR 816

Query: 827 RAKNARI 833
             +  ++
Sbjct: 817 EPRYQKL 823


>gi|223986334|ref|ZP_03636343.1| hypothetical protein HOLDEFILI_03653 [Holdemania filiformis DSM
           12042]
 gi|223961683|gb|EEF66186.1| hypothetical protein HOLDEFILI_03653 [Holdemania filiformis DSM
           12042]
          Length = 764

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 180/690 (26%), Positives = 331/690 (47%), Gaps = 39/690 (5%)

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
           A+    E + +RI+ +G+SE  I   G+ RI +QL G +D    R+++ +TA ++F  V 
Sbjct: 62  AMSAVAESVSKRINVLGVSEPQILIEGNDRIRVQLAGVKDQEEARRVISSTANLTFRDVN 121

Query: 219 PNNSKKGFMF--GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
            N      +   G   L   +G   +     + +         +     +  ++     E
Sbjct: 122 DNLLSDASIIKEGGASLGYENGAPVVSLKIADQAKFAEITQKVSEMGTGNNIMIVWLDYE 181

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            G     E      G             +    ++  SG   ISG FT   A  LA ++ 
Sbjct: 182 DGDSYVKEAAVAQAGGEAK-------YISAAQVKSAISGDCVISGGFTESEARELAELIN 234

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           +GSLP+K+  +    V AD G  +  K   A + G+ L+++FM+V+Y   G++AD  + L
Sbjct: 235 SGSLPVKMTEIYSNVVSADYGIGAFNKTATAGIVGVALVMIFMLVVYRFAGVIADVMLAL 294

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
            +    A+   +G   TLP IA +VLG+G+ VD+NI+  ERI++E    +SV  ++  G 
Sbjct: 295 YIFAVFAIYGGMGGVFTLPGIAALVLGVGMTVDANIITFERIKDELYAGRSVQNAVKEGQ 354

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           S +++TIFD+  T L+A ++++ FG GAV+GFA  + +++  +M   + + R ++  I++
Sbjct: 355 STSFATIFDAQFTTLLAALIMYIFGTGAVKGFATMLMVTVFCTMVLNVYVSRFLVNQIVK 414

Query: 517 YKKMKSIDINP------------LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
              + +                     F       + F+    + +  S++    ++ ++
Sbjct: 415 SGALDNKKTWFGVKQSNIPDVAKRQEQFYFGPFKKVDFVGKAKYFITTSLIILAAAVVMI 474

Query: 565 FTHGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             +G       N GIDF  G ++ V +N  ++ + VRS+ E+L       Q    +  ++
Sbjct: 475 CVNGFGGKGALNLGIDFSSGTKITVTSNETLNTNEVRSDFEALGYKPSRVQASGDKVVYV 534

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              Q    D +   +     K  I             +V P + REL++  I   +++ +
Sbjct: 535 TLNQALEQDQLTSIKETLTAKYGIEPND--------NVVTPVVGRELVKNAIALSLLAWV 586

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           AMLIYI IRFKW +A+  I  L+ D+   L  FA+F +E N+  ++ +L +IGYS+N+ +
Sbjct: 587 AMLIYITIRFKWDYAVSCIVALVHDVAIVLAIFAIFRMEINIELISVILAIIGYSINNSI 646

Query: 739 VVYDRMRKNMKLYTT----SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           VV+DR+R+++         +  +R +++ S+++TL RSV++S+   + ++ + + G   I
Sbjct: 647 VVFDRVRESIAESRKPKLTNADYRLIVNDSLDKTLVRSVFSSITTLLPIIALLLMGSGAI 706

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +F   M  G++    SSIFIA  +   I 
Sbjct: 707 VTFNFAMFVGLIAGTFSSIFIAPQMWYTIR 736



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 35/410 (8%), Positives = 109/410 (26%), Gaps = 19/410 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +   V + +++    ++      + ++               LGLDL+GG  +V ++ 
Sbjct: 6   RTSRLTVFVVTVVAIFAMIGIFAQDVAKNTT-------------LGLDLQGGFEIVYQIS 52

Query: 62  EDDFVNGF--LQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLF 118
                     +   ++ +   +   G+    +  +  ++I +  A  + +E     ++  
Sbjct: 53  PLQEGKDLPAMSAVAESVSKRINVLGVSEPQILIEGNDRIRVQLAGVKDQEEARRVISST 112

Query: 119 LQGVNSKLNVD-PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                  +N +      ++      +        +   I+   + +    +      G +
Sbjct: 113 ANLTFRDVNDNLLSDASIIKEGGASLGYENGAPVVSLKIADQAKFAEITQKVSEMGTGNN 172

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
              +                  +       + A++            GF           
Sbjct: 173 IMIVWLDYEDGDSYVKEAAVAQAGGEAKYISAAQVKSAISGDCVISGGFTESEARELAEL 232

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N   +   V+++ I+ N  +A++               +     F +        +A V
Sbjct: 233 INSGSL--PVKMTEIYSNVVSADYGIGAFNKTATAGIVGVALVMIFMLVVYRFAGVIADV 290

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    + A         G   + G   +     +       +     + +       +  
Sbjct: 291 MLALYIFAVFAIYGGMGGVFTLPGIAALVLGVGMTVDANIITFERIKDELYAGRSVQNAV 350

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
            +        I       +L  +++Y            + ++     + L
Sbjct: 351 KEGQSTSFATIFDAQFTTLLAALIMYIFGTGAVKGFATMLMVTVFCTMVL 400


>gi|154253476|ref|YP_001414300.1| preprotein translocase subunit SecD [Parvibaculum lavamentivorans
           DS-1]
 gi|154157426|gb|ABS64643.1| protein-export membrane protein SecD [Parvibaculum lavamentivorans
           DS-1]
          Length = 535

 Score =  271 bits (691), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 216/528 (40%), Positives = 327/528 (61%), Gaps = 9/528 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W V L  ++C  GL  + PNF+P++ L   P  +P  +I+LGLDLRGGS+L+L VD   
Sbjct: 6   RWKVALILLVCFAGLAYSAPNFIPKASLQGVPEWLPHQQINLGLDLRGGSYLLLAVDTAS 65

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V    Q   +++R+ L+ E I    +      +++   +    E   + +      V+ 
Sbjct: 66  IVRDRQQSLVNDVRNALRSERIPYTGLGLQGEGVSVRITNPEDVEKAREAIEGLSTIVSG 125

Query: 125 KLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                  + +L + TTE++I++ L++         A++QS+EI+R+RID++G +E  IQ+
Sbjct: 126 NAFSTLPERDLAIVTTERQITVALTEAEKIARTQSAVQQSIEIVRRRIDELGTTEPVIQQ 185

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM--------FGVRFLRD 235
            G+ RIL+Q+PG  DP RL++LLG TAKM+F  V    S +  +          + +  D
Sbjct: 186 QGTDRILVQVPGLDDPQRLKELLGQTAKMNFRLVSNAMSGQQALASRTVPSGTEILYTAD 245

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                 LVE ++ + G  L  A   FD +  +PVV+  FD  GAR+F EVTR+N+G+P A
Sbjct: 246 EPRAPVLVERRIMVGGDRLVDAQPGFDQRNGQPVVNFRFDSSGARQFGEVTRNNVGRPFA 305

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD +V++AP IN+ I  G  QISG+FT++ A  LA +LRAG+LP  LN++EER VG  
Sbjct: 306 IVLDDKVISAPRINEPIMGGSGQISGSFTVQAANDLAILLRAGALPAPLNVLEERTVGPG 365

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG+DSI  G  A V G V +V+FMI  YG +GL+A+ ++FLNV +  A LS+L ATLTLP
Sbjct: 366 LGADSIRAGEIAAVIGSVAVVVFMIASYGFFGLLANIALFLNVAMIFAALSILQATLTLP 425

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL IG+AVD+N+L+ ERIREE    +    +++ G++RA S+I D+NIT LI+  
Sbjct: 426 GIAGIVLTIGMAVDANVLIYERIREEIAAGKGPIPAIEAGYNRALSSILDANITTLISAA 485

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           +LF  G G VRGFA+T+G+ I+ S+FTA ++ R M+   +R ++ K++
Sbjct: 486 ILFQMGSGPVRGFAVTLGIGIITSVFTAFTVNRLMVSVWLRRRRPKTL 533



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 76/175 (43%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + IR G +  +I ++A+++++   + + F L A   L L++       ++  
Sbjct: 361 TVGPGLGADSIRAGEIAAVIGSVAVVVFMIASYGF-FGLLANIALFLNVAMIFAALSILQ 419

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++Y+R+R+ +            I+   N  L   +  
Sbjct: 420 ATLTLPGIAGIVLTIGMAVDANVLIYERIREEIAA---GKGPIPAIEAGYNRALSSILDA 476

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++   IS   +   G   +  FA+ +  GI+ +  ++  +   ++      R   
Sbjct: 477 NITTLISAAILFQMGSGPVRGFAVTLGIGIITSVFTAFTVNRLMVSVWLRRRRPK 531


>gi|284032592|ref|YP_003382523.1| protein-export membrane protein SecD [Kribbella flavida DSM 17836]
 gi|283811885|gb|ADB33724.1| protein-export membrane protein SecD [Kribbella flavida DSM 17836]
          Length = 765

 Score =  270 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 203/712 (28%), Positives = 353/712 (49%), Gaps = 33/712 (4%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +I +  S +   +   ++ ++++E++R+RID +G++E ++ R G  RI+++LPG QDP
Sbjct: 37  GTQIVLETSDSPTVKADQNSTDKALEVLRRRIDALGVTEPSVTRQGERRIIVELPGVQDP 96

Query: 200 SRLRQLLGTTAKMSFHKV-LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL--NG 256
               +++G TA++SFH+V     +K            SD    L   K  ++G  +    
Sbjct: 97  REAAEVIGKTAQLSFHEVLDQVAAKPAKPAAGDLYLPSDDGGVLKLGKPAMTGDMVGGAE 156

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD----------------G 300
           A  +        +V ++F + G + + ++T     +P+                      
Sbjct: 157 AVLDTQQMAQGWIVQLNFKDDGGKIWSQITGKAACQPVGAPQRSVAIVLDNEVLTAPQVD 216

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
               + + N  +P   + I+GNFT E A  L+A++  G+LP+ ++I+++R VG  LG D+
Sbjct: 217 PTGGSTLCNVGLPGSNSTITGNFTEEQAKDLSALISGGALPLPVDIIDQRTVGPSLGKDA 276

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I     A V G+ L  LF++++Y   GL+A   +     ++ A L+++GATLTLP +AG 
Sbjct: 277 IQASAWAGVIGVALTALFIVLVYRLVGLMAVIGLLAYAGMSYAALTVIGATLTLPGLAGF 336

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSV--FCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           VL IG+AVD+N+LV ER RE+    ++     SL  GF  A S I DSNIT L+A  +LF
Sbjct: 337 VLAIGMAVDANVLVFERAREDYIAGRTDGLRRSLRSGFGNALSAIADSNITTLLAAGLLF 396

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFLI 534
           F   G VRGF +T+ + ++ SM +A+ + R    F +  K + +      I    R    
Sbjct: 397 FLAAGPVRGFGVTLSVGVIASMLSALVVTRVFAEFFVSRKFVLNRPSISGIAGHGRVRTW 456

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            +      M+     + I++   + S+  +   GLN GI+F GG  + V   +PV     
Sbjct: 457 LEAKQPALMKHSRRWLLITLAAIVISVAGVAIRGLNLGIEFTGGRLIEVSTTQPVSPDQA 516

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ +      +   Q    +                     E +++ I  I   S +   
Sbjct: 517 RAAVAEAGYPNAVVQASGTDD-------ITVRTGTISNDEAEKIRESIGRIGGGSEVIRN 569

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E +GP +  EL  K ++ + ++ +A L Y+ IRF+W F  GA+  L+ ++   +G FA  
Sbjct: 570 ESIGPSLGNELRNKALIALGVALLAQLAYLAIRFRWTFGAGAVLALLQNVAVVVGVFAWT 629

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   +   +AA+LT+IGY+VND VVV+DR+R+  +   ++ +   +ID +I   L R++ 
Sbjct: 630 GKPVDGIFLAAMLTIIGYTVNDSVVVFDRIRE-TRNARSTENLGPVIDTAIVNVLPRTIN 688

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           T ++    +  +   GG  +  FA+ +  GIVV   SS   AAP+L+ +   
Sbjct: 689 TGISTLFILAALLFLGGDSLADFALALLLGIVVGTYSSNLTAAPLLVELEKR 740



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 68/175 (38%), Gaps = 2/175 (1%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +   VGP + ++ I+      +I      ++I + ++    L A+  L+     +     
Sbjct: 264 DQRTVGPSLGKDAIQASAWAGVIGVALTALFIVLVYRLV-GLMAVIGLLAYAGMSYAALT 322

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           + G    L  +A  +  IG +V+  V+V++R R++     T    R  +       L   
Sbjct: 323 VIGATLTLPGLAGFVLAIGMAVDANVLVFERAREDYIAGRT-DGLRRSLRSGFGNALSAI 381

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +++   ++   +       +  F + ++ G++ +  S++ +      F    +
Sbjct: 382 ADSNITTLLAAGLLFFLAAGPVRGFGVTLSVGVIASMLSALVVTRVFAEFFVSRK 436



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 73/265 (27%), Gaps = 30/265 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M  +  +  L++ +        +    P+                LGLDLRGG+ +VLE 
Sbjct: 1   MNRSSLVRALFAFLVLAASTYVVLTARPE----------------LGLDLRGGTQIVLET 44

Query: 61  D---EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                            + LR  +   G+   S+ +    +I +     +     A+ + 
Sbjct: 45  SDSPTVKADQNSTDKALEVLRRRIDALGVTEPSVTRQGERRIIVELPGVQDPREAAEVIG 104

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIV----LSQNNIDQVISHAIEQSMEIIRQRID 172
              Q    ++                        + +     +    +  +  ++  +  
Sbjct: 105 KTAQLSFHEVLDQVAAKPAKPAAGDLYLPSDDGGVLKLGKPAMTGDMVGGAEAVLDTQQM 164

Query: 173 QIGISESTIQRLGSHRILIQL------PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
             G       +    +I  Q+           P R   ++     ++  +V P       
Sbjct: 165 AQGWIVQLNFKDDGGKIWSQITGKAACQPVGAPQRSVAIVLDNEVLTAPQVDPTGGSTLC 224

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISG 251
             G+     +    +  E   ++S 
Sbjct: 225 NVGLPGSNSTITGNFTEEQAKDLSA 249


>gi|192291546|ref|YP_001992151.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris
           TIE-1]
 gi|192285295|gb|ACF01676.1| protein-export membrane protein SecD [Rhodopseudomonas palustris
           TIE-1]
          Length = 533

 Score =  270 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 201/530 (37%), Positives = 311/530 (58%), Gaps = 9/530 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W  +   +      L A+PNF P+S +  +P    +  + LGLDL+GGSH++LEVD +
Sbjct: 5   SRWKALAIILTALAVCLCAVPNFFPESTVKSWPKWA-QRHLVLGLDLQGGSHILLEVDAN 63

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 L    D+ R  L++  I    +    + + +  +          K+    Q + 
Sbjct: 64  SVKKDKLDSVRDDARRVLREARIAYTGLATKGDSVEVRISKDTDVPAALAKLRELSQPLG 123

Query: 124 SKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             L  + +++L +       I + + Q  I   +  +++QS++I+ +R++++G  E  IQ
Sbjct: 124 GLLGSNGQRSLEVSDAGGGLIRLTVPQAAIADRVRQSVDQSIQIVERRVNELGTVEPLIQ 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRD 235
           R G+ RIL+Q+PG QDP+RL++LLG TAK+ F  V  + S    M G             
Sbjct: 184 RQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSGDQAMGGNVPPDSELLMSAS 243

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S    Y+++ +V +SG  L  A   FD +T +P+V   F+  GAR+F   T +N+G P A
Sbjct: 244 SPKQPYVIKKQVLVSGADLTDAQPGFDQRTGEPIVSFRFNTNGARKFARATTENVGLPFA 303

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD  V++APVI + I  G  QISG+FT++ A  LA +LRAG+LP  L I+EER VG  
Sbjct: 304 IVLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPG 363

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI KG  A   G +L+++FM++ Y  +G+ A+ ++ +NV +   +LSLL ATLTLP
Sbjct: 364 LGQDSIEKGERAAYVGSILVIVFMLLTYRLFGVFANLAVAVNVAMIFGVLSLLNATLTLP 423

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA +TI DSNIT  IA  
Sbjct: 424 GIAGIVLTVGIAVDSNVLIYERIREEIRAGRNAISAIDAGFKRALATILDSNITTFIAAA 483

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           VLF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++   +R+K+   + I
Sbjct: 484 VLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVATWVRWKRPHHVPI 533



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 101/263 (38%), Gaps = 10/263 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
              G   +    N        R+  E++ +      + +     ++R     G       
Sbjct: 271 QRTGEPIVSFRFNTNGARKFARATTENVGLPFAIVLDNEVISAPVIREPITGGSGQISGS 330

Query: 634 VLEMVKKKIT------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                   +        +    TI     VGP + ++ I KG     + +I +++++ + 
Sbjct: 331 FTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGERAAYVGSILVIVFMLLT 390

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F + A   + +++    G  +L      L  +A ++  +G +V+  V++Y+R+R+ 
Sbjct: 391 YRL-FGVFANLAVAVNVAMIFGVLSLLNATLTLPGIAGIVLTVGIAVDSNVLIYERIREE 449

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++    +IS    ID      L   + +++  FI+   +   G   +  FA+ +  GI+ 
Sbjct: 450 IRAGRNAIS---AIDAGFKRALATILDSNITTFIAAAVLFYIGTGPVRGFAVTLGIGIIT 506

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
              ++  +   I+     W+  +
Sbjct: 507 TVFTAFTLTRLIVATWVRWKRPH 529


>gi|226323924|ref|ZP_03799442.1| hypothetical protein COPCOM_01701 [Coprococcus comes ATCC 27758]
 gi|225207473|gb|EEG89827.1| hypothetical protein COPCOM_01701 [Coprococcus comes ATCC 27758]
          Length = 721

 Score =  270 bits (688), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 195/686 (28%), Positives = 328/686 (47%), Gaps = 34/686 (4%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q       +  ++ ++  +++R++Q    E+++ + G  RI I++PG  D +++ + 
Sbjct: 51  ITYQAKDKNPSAEDMKDTIYKLQKRVEQYST-EASVYQEGDDRINIEIPGVSDANKVLEE 109

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG    + F     N   +G        +  + +                        K 
Sbjct: 110 LGKPGSLVFQDADGNTVLEGTDVKNAEAQTQENST----------------------TKN 147

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            + VV +   + G  +F E T  N+GK ++++ DG+ +++P +NQAI  G+A I+G  + 
Sbjct: 148 KEYVVALQLTKEGTTKFAEATAANVGKQISIIYDGQTISSPRVNQAIEGGEAVITGMSSY 207

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LAA +R G L ++L  +    V A LG ++I     A   GL +I +FM  +Y  
Sbjct: 208 EEADNLAATIRIGGLSLELEELRSNVVAAQLGEEAISTSLMAGAIGLAIIFVFMCFVYLI 267

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL A  ++ +   L L LL+    TLTLP IAGI+LGIG+AVD+N+++  R+REE    
Sbjct: 268 PGLAAGLALLIYTGLILVLLNAFNITLTLPGIAGIILGIGMAVDANVIIFARVREEVTTG 327

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            S+  SL  GF +A S I D N+T LIA  +L+F G G+V+GFA T+ L I++SMFTA+ 
Sbjct: 328 ISIKTSLKNGFHKALSAIVDGNVTTLIAAAILWFKGSGSVKGFAQTLALGIVVSMFTALV 387

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           I R ++  +        +            +   I F+  +     ISI         + 
Sbjct: 388 ITRIIIFSLYAIG----LRDVKFYAKKFKKERKVIDFLGKKAIFFAISIAVIAAGFVTMG 443

Query: 566 THGL------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
                     NY ++FKGG    V  ++   +  + S +  +        N   +K    
Sbjct: 444 VQSGKGEGALNYSLEFKGGTATTVTFDKDYSIKEIDSKIVPVVEDVTGDHNVQAQKVKDS 503

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                   ++       +      +    ++    E +   +S E+ +  I+ VIISAI 
Sbjct: 504 NQIIIKTQTLNLDEREALNNALADKFGVDTSTITAENISSTVSSEMRQDAIIAVIISAIC 563

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           MLIYIW RFK   FA  A+  L+ D+   L F+AL       T +A +LT++GYS+N  +
Sbjct: 564 MLIYIWFRFKDVRFASSAVLALLHDLLFVLTFYALARTSVGNTFIACMLTILGYSINATI 623

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V++DR+R+ +++   +   + L+++SI  TL RS+YT+   F+ V  + + G S I  FA
Sbjct: 624 VIFDRIREELRVMKRNDDLKALVNRSITYTLTRSIYTTFTTFVMVAVLYIMGVSSIKEFA 683

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIY 824
            P+  GI     SS+ I   +   + 
Sbjct: 684 APLMVGIAGGGYSSVCITGALWYVMK 709



 Score =  105 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 79/180 (43%), Gaps = 4/180 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + +V  ++  E I   ++   I    + +++   +     L A   L++     L    
Sbjct: 230 RSNVVAAQLGEEAISTSLMAGAIGLAIIFVFMCFVY-LIPGLAAGLALLIYTGLILVLLN 288

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F I   L  +A ++  IG +V+  V+++ R+R+ +   TT IS +  +    ++ L   
Sbjct: 289 AFNITLTLPGIAGIILGIGMAVDANVIIFARVREEV---TTGISIKTSLKNGFHKALSAI 345

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           V  ++   I+   +   G   +  FA  +A GIVV+  +++ I   I+  +Y    ++ +
Sbjct: 346 VDGNVTTLIAAAILWFKGSGSVKGFAQTLALGIVVSMFTALVITRIIIFSLYAIGLRDVK 405



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/155 (10%), Positives = 47/155 (30%), Gaps = 1/155 (0%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             I+LGLDL GG  +  +  + +     ++    +L+  +++        ++  ++I + 
Sbjct: 37  RNINLGLDLAGGVSITYQAKDKNPSAEDMKDTIYKLQKRVEQYSTEASVYQEGDDRINIE 96

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                    + +++      V                   E     +    ++    A++
Sbjct: 97  IPGVSDANKVLEELGKPGSLVFQDA-DGNTVLEGTDVKNAEAQTQENSTTKNKEYVVALQ 155

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196
            + E   +  +    +      +      I  P  
Sbjct: 156 LTKEGTTKFAEATAANVGKQISIIYDGQTISSPRV 190


>gi|90424273|ref|YP_532643.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris
           BisB18]
 gi|90106287|gb|ABD88324.1| protein-export membrane protein SecD [Rhodopseudomonas palustris
           BisB18]
          Length = 534

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 206/530 (38%), Positives = 312/530 (58%), Gaps = 10/530 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +   +      L A+PNF P++ +  +P    +  + LGLDL+GGSH++LEVD + 
Sbjct: 6   RWKALAIILTALAVCLCAVPNFFPEATVKTWPKWA-QRHLVLGLDLQGGSHILLEVDSNS 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                L    D+ R  L+   I    +    + + +  +          K+    Q +  
Sbjct: 65  VRKDKLDQVRDDTRRTLRDAKIPYTGLAVRNDAVEVRISKDSDVATALSKLRELSQPLGG 124

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +    ++NL +       I + ++Q  I + I  ++EQS++I+ +R++++G  E  IQR
Sbjct: 125 LMGQSGQRNLEVSDAGSGLIRLAVTQAAITERIRQSVEQSIQIVERRVNELGTVEPLIQR 184

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237
            G  RIL+Q+PG QDP+RL++LLG TAK+ F  V P         G     DSD      
Sbjct: 185 QGIDRILVQVPGLQDPTRLKELLGKTAKLDFRMVDPTVPADQVRQGGGVPPDSDLLMGAQ 244

Query: 238 --GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                Y+++ +V +SG  L  A   FD ++ +P+V   F+  GAR+F + T DN+G+P A
Sbjct: 245 APKQPYVIKKQVLVSGGDLTDAQPGFDQRSGEPIVSFRFNTSGARKFAQATTDNVGQPFA 304

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD  V++APVI + I  G  QISG+FT++ A  LA +LRAG+LP  L I+EER VG  
Sbjct: 305 IVLDNEVISAPVIREPITGGSGQISGSFTVQQANDLAILLRAGALPAPLTIIEERTVGPG 364

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI KG  A   G +L+++FM++ Y  +G+ A+ ++ +NV +   +LSLL ATLTLP
Sbjct: 365 LGQDSIEKGELAAYVGSILVIVFMLLTYRLFGVFANIAVAINVAMIFGVLSLLNATLTLP 424

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA STI DSNIT  IA  
Sbjct: 425 GIAGIVLTVGIAVDSNVLIYERIREEIRGGRTAISAIDAGFKRALSTILDSNITTFIAAA 484

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           VLF+ G G VRGFA+T+G+ IL ++FTA ++ R ++   +R+K+  S+ I
Sbjct: 485 VLFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVAAWVRWKRPHSVPI 534



 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 84/174 (48%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I KG +   + +I +++++ + ++  F + A   + +++    G  +L    
Sbjct: 362 GPGLGQDSIEKGELAAYVGSILVIVFMLLTYRL-FGVFANIAVAINVAMIFGVLSLLNAT 420

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++   T+IS    ID      L   + +++
Sbjct: 421 LTLPGIAGIVLTVGIAVDSNVLIYERIREEIRGGRTAIS---AIDAGFKRALSTILDSNI 477

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FI+   +   G   +  FA+ +  GI+    ++  +   I+     W+  ++
Sbjct: 478 TTFIAAAVLFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVAAWVRWKRPHS 531


>gi|307946884|ref|ZP_07662219.1| protein-export membrane protein SecD [Roseibium sp. TrichSKD4]
 gi|307770548|gb|EFO29774.1| protein-export membrane protein SecD [Roseibium sp. TrichSKD4]
          Length = 536

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 199/531 (37%), Positives = 317/531 (59%), Gaps = 10/531 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W + L  ++   G+L  LPNFL Q  LD +P  +PKN++ LGLDL+GG++L+ EVD++D
Sbjct: 6   RWKIALILVVVTAGILATLPNFLSQKTLDSWPDFLPKNQMVLGLDLQGGAYLLYEVDKED 65

Query: 65  FVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           ++   L+    ++R+ L+++  IG   +        +   D     +  +++      + 
Sbjct: 66  YIQKRLKGLVGDIRATLREQPRIGYTGLGVQGEAAQVRIRDLTKLADAEERLQDLKNPLV 125

Query: 124 SKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           S L       +  +  + +  I    +   +D  +   ++QS+E+IR+R+D++G +E  I
Sbjct: 126 SNLFAGQPVDEFQINVSDDGLIRFTYTDEGLDNRLQSIVQQSIEVIRRRVDELGTTEPNI 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------- 234
           QR G+ RIL++ PGE DP RL+ L+G TA+++FH V  + S    M     +        
Sbjct: 186 QRQGTDRILVEAPGENDPERLKDLVGQTAQLTFHMVDTSMSGDQAMQSRPPVGTMVAFSI 245

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           D     YL+E+   + G  L  A  +FD + ++PVV+  F+  GAR+F  +T+ N+G+P 
Sbjct: 246 DDPPIPYLLEETPLLGGEDLVDAQVSFDQRNNEPVVNFRFNTSGARKFSVITQQNVGRPF 305

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A+VLD  V++APVI + I  G  QISG+FT+E A  LA +LRAG+LP KL ++EER++G 
Sbjct: 306 AIVLDEEVISAPVIREPITGGSGQISGSFTVEGANDLAVLLRAGALPAKLTVIEERSIGP 365

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG DSI  G  A +   V ++ FM++ YG++G++AD ++  N+ L    L+ L ATLTL
Sbjct: 366 GLGQDSIEAGEYASIIAGVAVIAFMLLAYGRFGVIADLALMANIFLIFGALTFLQATLTL 425

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL IG+AVD+N+L+ ERIREE R  +S   ++D G+ RA  TI D+N+T LIA 
Sbjct: 426 PGIAGIVLTIGMAVDANVLIFERIREEARAGRSAITAIDAGYKRALGTILDANVTTLIAA 485

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           V+LF  G G VRGFA+T+ + I  ++F+A +  R ++   +R  +   + I
Sbjct: 486 VILFQLGSGPVRGFAVTLAIGIFTTVFSAFTFSRLLVALWVRTARPTKLPI 536



 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 81/178 (45%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP + ++ I  G    II+ +A++ ++ + +   F + A   L+ +I    G      
Sbjct: 362 SIGPGLGQDSIEAGEYASIIAGVAVIAFMLLAYG-RFGVIADLALMANIFLIFGALTFLQ 420

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++++R+R+  +      S    ID      LG  +  
Sbjct: 421 ATLTLPGIAGIVLTIGMAVDANVLIFERIREEARA---GRSAITAIDAGYKRALGTILDA 477

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I+ + +   G   +  FA+ +A GI     S+ F  + +L+ ++   A+  ++
Sbjct: 478 NVTTLIAAVILFQLGSGPVRGFAVTLAIGIFTTVFSA-FTFSRLLVALWVRTARPTKL 534


>gi|39935898|ref|NP_948174.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris
           CGA009]
 gi|39649752|emb|CAE28273.1| protein-export membrane protein secD [Rhodopseudomonas palustris
           CGA009]
          Length = 533

 Score =  268 bits (685), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 201/530 (37%), Positives = 311/530 (58%), Gaps = 9/530 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W  +   +      L A+PNF P+S +  +P    +  + LGLDL+GGSH++LEVD +
Sbjct: 5   SRWKALAIILTALAVCLCAVPNFFPESTVKSWPKWA-QRHLVLGLDLQGGSHILLEVDAN 63

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 L    D+ R  L++  I    +    + + +  +          K+    Q + 
Sbjct: 64  SVKKDKLDSVRDDARRVLREARIAYTGLATKGDSVEVRISKDTDVPVALAKLRELSQPLG 123

Query: 124 SKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             L  + +++L +       I + + Q  I   +  +++QS++I+ +R++++G  E  IQ
Sbjct: 124 GLLGSNGQRSLEVSDAGGGLIRLTVPQAAIADRVRQSVDQSIQIVERRVNELGTVEPLIQ 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRD 235
           R G+ RIL+Q+PG QDP+RL++LLG TAK+ F  V  + S    M G             
Sbjct: 184 RQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSGDQAMGGNVPPDSELLMSAS 243

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S    Y+++ +V +SG  L  A   FD +T +P+V   F+  GAR+F   T +N+G P A
Sbjct: 244 SPKQPYVIKKQVLVSGADLTDAQPGFDQRTGEPIVSFRFNTNGARKFARATTENVGLPFA 303

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD  V++APVI + I  G  QISG+FT++ A  LA +LRAG+LP  L I+EER VG  
Sbjct: 304 IVLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPG 363

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI KG  A   G +L+++FM++ Y  +G+ A+ ++ +NV +   +LSLL ATLTLP
Sbjct: 364 LGQDSIEKGERAAYVGSILVIVFMLLTYRLFGVFANLAVAVNVAMIFGVLSLLNATLTLP 423

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA +TI DSNIT  IA  
Sbjct: 424 GIAGIVLTVGIAVDSNVLIYERIREEIRAGRNAISAIDAGFKRALATILDSNITTFIAAA 483

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           VLF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++   +R+K+   + I
Sbjct: 484 VLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVATWVRWKRPHHVPI 533



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 101/263 (38%), Gaps = 10/263 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
              G   +    N        R+  E++ +      + +     ++R     G       
Sbjct: 271 QRTGEPIVSFRFNTNGARKFARATTENVGLPFAIVLDNEVISAPVIREPITGGSGQISGS 330

Query: 634 VLEMVKKKIT------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                   +        +    TI     VGP + ++ I KG     + +I +++++ + 
Sbjct: 331 FTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGERAAYVGSILVIVFMLLT 390

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F + A   + +++    G  +L      L  +A ++  +G +V+  V++Y+R+R+ 
Sbjct: 391 YRL-FGVFANLAVAVNVAMIFGVLSLLNATLTLPGIAGIVLTVGIAVDSNVLIYERIREE 449

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++    +IS    ID      L   + +++  FI+   +   G   +  FA+ +  GI+ 
Sbjct: 450 IRAGRNAIS---AIDAGFKRALATILDSNITTFIAAAVLFYIGTGPVRGFAVTLGIGIIT 506

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
              ++  +   I+     W+  +
Sbjct: 507 TVFTAFTLTRLIVATWVRWKRPH 529


>gi|283769654|ref|ZP_06342550.1| protein-export membrane protein SecDF [Bulleidia extructa W1219]
 gi|283103922|gb|EFC05308.1| protein-export membrane protein SecDF [Bulleidia extructa W1219]
          Length = 765

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 157/677 (23%), Positives = 317/677 (46%), Gaps = 32/677 (4%)

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
           I +R++ +G++E  I   G++R+ +QL G +D +  R+L+GTTAK++F  V         
Sbjct: 72  ISKRVNVLGVNEPQISVEGNNRVRVQLAGAKDLNTARKLIGTTAKLTFRDVNDKE----- 126

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
           +     L++   +      +  +S    + A      +      +     +    + +  
Sbjct: 127 LADSSILQEGGASLAYQSGEPVVSFKVKDTAKFRAITREIAAKKNGQNVMVIWLDYSKGD 186

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
              +              +        SG + I GNFT E+A  LA ++ +GSLP+KL  
Sbjct: 187 SYQVESQKKAQGKEPKYVSAASVNQALSGDSIIQGNFTEESARTLANLINSGSLPVKLTE 246

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +    V A  G D++ K   A + G+ +++LFMI +Y   G+VA   +   V     + +
Sbjct: 247 ISSNVVSAAYGQDALSKTAFAGMIGVGVVMLFMIAVYRLPGIVASIMLVSYVWAVFGIYA 306

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           L+GAT TL  I  +VLGIG+ VD+NI+  ERIR+E    +S+  ++  G   +++ +FD+
Sbjct: 307 LMGATFTLSGIGALVLGIGMTVDANIVNYERIRQEMYAGKSIRSAVREGQKLSFAAVFDA 366

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----------I 515
             T LIA ++++ +G G V+GFA  + +++ +++   + + + ++  +            
Sbjct: 367 QFTTLIAALIMYIWGSGTVKGFATMLIITVFMTLILNVGLSKILLDLLIKSGICDGHPTW 426

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL------ 569
              K   I                + ++    + +  +I+     + L   +        
Sbjct: 427 FAVKPNQIPDVTKGEKQFYTGTHHVNYVDKAKYLIRTAIVTIAIFLGLGIFNQFKGTGFL 486

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N GIDF  G +L + +N+ +    V+   E + + + SFQ            +     + 
Sbjct: 487 NLGIDFSAGTKLTITSNKKITTMDVQKEFEKIGLKNYSFQASGD--------KTVYATTK 538

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                 E+ K K +            +V P + ++L++   +  +++ IAM+ Y+ IR++
Sbjct: 539 QAISTEELSKVKKSLKEVYGQEPGDNVVTPVVGKDLVQNAFILTMVAWIAMMAYVTIRYE 598

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK--N 747
           W +AL  I  L+ D+   L  F +  +E N+  ++ +LT+IGYS+N+ ++V+DR+R+  N
Sbjct: 599 WDYALSCIVALVHDVLIVLAVFGILRLEVNIELISVLLTIIGYSINNSIIVFDRIREQMN 658

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++    +I ++ +++ +I+ T+  ++ +S    + V+ +   G   I +F   M  G+V 
Sbjct: 659 LRKNKENIDYKVVVNDAIDATIKEALNSSFTTIVPVIILLFLGSQAIFTFIFAMLVGLVA 718

Query: 808 AASSSIFIAAPILLFIY 824
              SSIF++  +  ++ 
Sbjct: 719 GTFSSIFVSPILWYYLR 735


>gi|210616350|ref|ZP_03291055.1| hypothetical protein CLONEX_03276 [Clostridium nexile DSM 1787]
 gi|210149837|gb|EEA80846.1| hypothetical protein CLONEX_03276 [Clostridium nexile DSM 1787]
          Length = 548

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 136/545 (24%), Positives = 262/545 (48%), Gaps = 15/545 (2%)

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +D  +++ P +N  I  GKA+I+G  + E A  L+  + +G+LP  +       +   LG
Sbjct: 1   MDEELISNPTVNAKITGGKAEITGMASQEEAQNLSDKINSGALPFSMETTNYNTISPTLG 60

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + ++     A    LVL  LFMI  Y   G+++  ++   V L + ++S+   T+TLP I
Sbjct: 61  NKALNAMALAAEIALVLTCLFMIAWYRLPGVISCLTLAFQVALQVLVISVPQYTITLPGI 120

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG++L  G+AVD+NI+++ERI EE +K  SV  ++  G+ RA+S++ D N+T  +   +L
Sbjct: 121 AGLILSAGMAVDANIIISERISEELKKGNSVRTAVKNGYKRAFSSVLDGNVTTAVVAGIL 180

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
              G G +  F  T+   ++I++   + + R M+  +IRYK       N    F    + 
Sbjct: 181 MVLGSGTMLSFGYTLLTGVIINLLAGVWMSRYMLNSVIRYKL-----FNQEKWFRKKKEK 235

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             ++F   + +    S++  +  +     +G+     F GG+ L    +   D   ++  
Sbjct: 236 KILKFAETKKYFFLTSVVLLMAGLIWSSVNGMKLDTQFTGGVILRYTYSGEADTGNIQKE 295

Query: 598 LESLQIGDISFQNFDGE--KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           ++ +   +++ Q           + +       +   +  E++               T 
Sbjct: 296 VQDVVDRNVNVQTAKNSATGEKNLVITLSGKKGLTPEQQKEILNTINEGNTNQFETAETS 355

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFF 711
            + P I  + ++   + +++S + +++YI +RF         + A+  L+ DI   L  F
Sbjct: 356 AIEPYIGAKALKNSAIAIVLSFLFIVVYIRVRFSALGGLASGVTAVIALLHDILIVLFIF 415

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +F I  N   VA  LT+IGYS+ND +V+YDR+R++        +  +L+D S  ETL R
Sbjct: 416 GIFKIPVNDAFVAVTLTIIGYSINDTIVLYDRIREHRNGAKNKSTLAELVDISTTETLQR 475

Query: 772 SVYTSMAAFISVLPMA----VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           S+ T+    +    +     V+G   I +F++P+  G++    SSI IA P+ ++  + +
Sbjct: 476 SINTAFTVVLCAFVIFVVSVVYGMESITNFSLPLLAGLISGCYSSICIAGPLWVWWEEHK 535

Query: 828 AKNAR 832
            +  +
Sbjct: 536 ERIQK 540


>gi|325001117|ref|ZP_08122229.1| bifunctional preprotein translocase subunit SecD/SecF
           [Pseudonocardia sp. P1]
          Length = 744

 Score =  267 bits (682), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 175/717 (24%), Positives = 334/717 (46%), Gaps = 31/717 (4%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                  L      +I +           + A ++ +E++R R+D +G++E ++ R G +
Sbjct: 27  TTAPTLGLDLRGGTQIVLETRDTEEVPADAAATDRVLEVLRGRVDGLGVAEPSLTRSGEN 86

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI+++LPG  DP+   + LG TA+++ H V                 D  G    +    
Sbjct: 87  RIIVELPGLTDPAEAAETLGRTAQLTMHPV-----LGTGAPEAAPTADETGQPLQL-GPP 140

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD-------- 299
            + G  +  A +    ++    V + FD  G  R+  +T      P              
Sbjct: 141 ALQGDMIASAQSVPSQQSVGFEVQVGFDGEGPGRWQALTGQAACAPPGDPQRRVAIVLDD 200

Query: 300 -----GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                 +V  +      +  G+  I+GNF+ E A  L+ ++  G+LP+ + I+E+R VG 
Sbjct: 201 QVISSPQVDPSIACQVGMVGGQTTITGNFSQEQANELSVLIEGGALPVPVEIIEQRTVGP 260

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG+D+I     A + G  L  +F+IV+Y   G+VA  ++    +   A+ + LGATLTL
Sbjct: 261 TLGADAISASAWAAIIGSALTAVFLIVVYRLVGVVAVVALGGYALTAYAVQTGLGATLTL 320

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P +A  VL +G+AVD+N+L+ ER REE      +  + + G+  + S + D+ +T+L+A 
Sbjct: 321 PGLAAFVLAVGMAVDANVLIAERSREEYAARPRLERASENGYRFSLSAVGDAAVTSLLAA 380

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM----MIFIIRYKKMKSIDINPLSR 530
           V+LF    G VRGF +T+ + +++S+F+A+ + R +    +      ++ +   I  +  
Sbjct: 381 VLLFGLASGPVRGFGVTLVIGVVVSLFSALVLSRLLTLAVLRIPAVRRRPRITGIAAIGP 440

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                +     F+R     + ++ +  + ++  LF  GL  G++F GG  +      P+ 
Sbjct: 441 VRQRLEARDPGFLRNAAKVLAVAGVVLVVAVSGLFVRGLELGVEFTGGRLVEFTTTNPIT 500

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               R  + +    ++                            +  ++  +      + 
Sbjct: 501 PEQAREAVTAAGYPNLQVTTTGDG-------AVGLRAGELADAEVAALRDSVAAAGGGAE 553

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +   E++GP +  EL R G++ + ++  A  +Y+  RF+W    GA+  L+ ++   +G 
Sbjct: 554 VLRDEMIGPSLGEELARGGLIALGVALAAQFLYLAFRFRWTLGAGAVAALLANVLVVVGV 613

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA  G   +   +AA+LT+IGYSVND VVV+DR+R++         F  ++  ++  TL 
Sbjct: 614 FAWTGRTLDGVFLAALLTVIGYSVNDTVVVFDRVREHWARRAK-DPFHRVVGSAVLSTLP 672

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           R+V T ++  + ++ + + GG+ +  FA+ +  GIVV   S+I +A P+ + +    
Sbjct: 673 RTVNTGVSTLMILVMLLLLGGATLADFALALIIGIVVGTISTIVVAGPVAILLERRW 729



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 66/199 (33%), Gaps = 9/199 (4%)

Query: 46  LGLDLRGGSHLVLEV-DEDDFVNGFL--QMYSDELRSFLKKEGIGVFSMRQIQ-NKITLS 101
           LGLDLRGG+ +VLE  D ++            + LR  +   G+   S+ +   N+I + 
Sbjct: 32  LGLDLRGGTQIVLETRDTEEVPADAAATDRVLEVLRGRVDGLGVAEPSLTRSGENRIIVE 91

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV---ISH 158
                     A+ +    Q     +          T  E    + L    +       + 
Sbjct: 92  LPGLTDPAEAAETLGRTAQLTMHPVLGTGAPEAAPTADETGQPLQLGPPALQGDMIASAQ 151

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
           ++     +  +             +  + +     PG  DP R   ++     +S  +V 
Sbjct: 152 SVPSQQSVGFEVQVGFDGEGPGRWQALTGQAACAPPG--DPQRRVAIVLDDQVISSPQVD 209

Query: 219 PNNSKKGFMFGVRFLRDSD 237
           P+ + +  M G +     +
Sbjct: 210 PSIACQVGMVGGQTTITGN 228


>gi|146340964|ref|YP_001206012.1| preprotein translocase subunit SecD [Bradyrhizobium sp. ORS278]
 gi|146193770|emb|CAL77787.1| Protein-export membrane protein secD [Bradyrhizobium sp. ORS278]
          Length = 533

 Score =  266 bits (680), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 208/529 (39%), Positives = 320/529 (60%), Gaps = 9/529 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +   +   +  L A+PNF P++ +  +P+   +  I LGLDL+GGS+L+LEVD + 
Sbjct: 6   RWKALGIILTALVVCLCAVPNFFPEATVKTWPAWA-QRHIVLGLDLQGGSYLLLEVDSNY 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                L    D++R  L+   IG   +    + + +             K+    Q +  
Sbjct: 65  VKKERLDSVRDDVRRTLRDAKIGYTGLTSKGDGVEVKITKDTDVPTALSKLRDLSQPLGG 124

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            L    +++L +       I + + Q  I + +   IEQS++I+ +RI+++G  E  IQR
Sbjct: 125 LLGSSGQRSLEVSDAGNSLIRLTIPQAAITERVRQTIEQSIQIVERRINELGTVEPVIQR 184

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDS 236
            G+ RIL+Q+PG QDP++L+ LLG TAKM F  V    S +  + G             S
Sbjct: 185 QGTDRILVQVPGLQDPTQLKNLLGRTAKMEFRMVDTTVSPEQALQGRVPPDSEVLQSATS 244

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y+V+ +V +SG  L+ A   FD +T++P+V   F+  GAR+F + T +N+G+P A+
Sbjct: 245 PNQPYVVKKQVLVSGGDLSDAQTGFDQRTNEPIVSFRFNSAGARKFAQATTENVGQPFAI 304

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLD +V++APVI + I  G  QISGNFT+++A  LA +LRAG+LP  L ++EER VG  L
Sbjct: 305 VLDNKVISAPVIREPITGGSGQISGNFTVQSANELAILLRAGALPAPLTVIEERTVGPGL 364

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G+DSI KG  A   G +L+++FM+V Y  +G+ A+ ++ +NV +   +LSLL ATLTLP 
Sbjct: 365 GADSIAKGELASYVGSILVIVFMLVTYRLFGVFANIAVVVNVAMIFGVLSLLNATLTLPG 424

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA +TI DSNIT  IA  V
Sbjct: 425 IAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFIAAAV 484

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF+ G G VRGFA+T+G+ IL ++FTA ++ R ++ + +R+K+ +S+ I
Sbjct: 485 LFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVAWWVRWKRPQSVPI 533



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 83/174 (47%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I KG +   + +I +++++ + ++  F + A   +++++    G  +L    
Sbjct: 361 GPGLGADSIAKGELASYVGSILVIVFMLVTYRL-FGVFANIAVVVNVAMIFGVLSLLNAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++    +IS    ID      L   + +++
Sbjct: 420 LTLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAIS---AIDAGFKRALATILDSNI 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FI+   +   G   +  FA+ +  GI+    ++  +   I+ +   W+   +
Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVAWWVRWKRPQS 530


>gi|238917315|ref|YP_002930832.1| preprotein translocase SecD subunit / preprotein translocase SecF
           subunit [Eubacterium eligens ATCC 27750]
 gi|238872675|gb|ACR72385.1| preprotein translocase SecD subunit / preprotein translocase SecF
           subunit [Eubacterium eligens ATCC 27750]
          Length = 746

 Score =  265 bits (677), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 197/688 (28%), Positives = 345/688 (50%), Gaps = 22/688 (3%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  Q   D   S  +E ++  +++R++    +ES + + G +RI +++PG  D + + + 
Sbjct: 53  ITYQIKEDNFTSQDVEDTIYKLQKRVEG-KSTESQVYKEGDNRITVEIPGVTDANEILKE 111

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK- 264
           LGT   + F            +    +   S GN Y       ++G  +  A A  D   
Sbjct: 112 LGTPGSLEF------------LDSTGYTAFSQGNDYTPL----LTGSDVKAAQAYTDTNS 155

Query: 265 --THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
                  V ++F + GA +F++ T  NIG  + +V DG V++AP +  AI  G A I+G 
Sbjct: 156 SEDTPYGVQLTFTDDGATKFYDATSANIGNRIYIVYDGEVVSAPNVKTAISGGTATITGM 215

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            + + A  LA  +R GS+P+ L  V    VGA LG  +I     A   GL L+ LFMIV+
Sbjct: 216 ESFDEADNLATYIRVGSIPLTLEEVSSNIVGAQLGHAAIKSSLIAAAIGLALLCLFMIVM 275

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           +   GLVA  S+ +   L L L+S+   TLTLP IAGI+LGIG+AVD N+++  RIREE 
Sbjct: 276 FRIPGLVATLSLIIYTSLVLFLVSVYDLTLTLPGIAGIILGIGMAVDGNVIIYTRIREEI 335

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
              +SV  ++  G+++A S+I D N+T LIA +VL+ FG G V+GFA T+ +  ++S+FT
Sbjct: 336 GAGKSVESAILSGYNKATSSIVDGNVTTLIAALVLYIFGTGPVKGFATTLAVGNIVSIFT 395

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           ++ I + +M  +  +    +           +      ++       V  + + ++    
Sbjct: 396 SLVITKVIMKLLYNFGIRDAKWYGKNVYRKTLDVLSIKKWAAIGSAVVIAAGIITMAVQA 455

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRL 621
            L    LN+ ++F GG       ++      +  N+  +            +K     ++
Sbjct: 456 GLGNRALNFSLEFVGGSTTTFTFDKEYTAEEIEDNIIPVIRDAAGITEVQQQKVADSTQV 515

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
            ++  D   + R            +   TI  T+ +   +S  + R  I+ VI++ I ML
Sbjct: 516 SFKTSDLSLEQREAIENAVTAKYPIKDGTIVETDTISSSVSATVKRDAILSVILATICML 575

Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           IYI++RF+   FAL A+  L+ D+   L F+A   I    T +A +LT++GYS+N  +++
Sbjct: 576 IYIFVRFRDIRFALAAVLALLHDVLVVLAFYAFARIPVGTTFIACMLTIVGYSINGTIII 635

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           +DR+R+ +K   +  +  +L++ SI  T+ R+VYTS+   I ++ + + G + +  F +P
Sbjct: 636 FDRIREQLKTANSKTNITELVNSSITSTMSRTVYTSITTLIMLIVLFIMGVTSVKEFTLP 695

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  GIVV A SS+ + + +   +   + 
Sbjct: 696 LIVGIVVGAYSSVCLTSAMWYVMGGKKR 723



 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 91/212 (42%), Gaps = 4/212 (1%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G              ++  I       ++ IVG ++    I+  ++   I    +
Sbjct: 209 TATITGMESFDEADNLATYIRVGSIPLTLEEVSSNIVGAQLGHAAIKSSLIAAAIGLALL 268

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            +++ + F+    L A  +LI+  +  L   +++ +   L  +A ++  IG +V+  V++
Sbjct: 269 CLFMIVMFRIP-GLVATLSLIIYTSLVLFLVSVYDLTLTLPGIAGIILGIGMAVDGNVII 327

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           Y R+R+ +       S    I    N+     V  ++   I+ L + ++G   +  FA  
Sbjct: 328 YTRIREEIGA---GKSVESAILSGYNKATSSIVDGNVTTLIAALVLYIFGTGPVKGFATT 384

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +A G +V+  +S+ I   I+  +Y++  ++A+
Sbjct: 385 LAVGNIVSIFTSLVITKVIMKLLYNFGIRDAK 416



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 64/173 (36%), Gaps = 9/173 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +    I+YS+I  + L+  +           + S      I LGLDL GG  +  ++
Sbjct: 1   MKYSLPKKIIYSIIVAVLLVGLVLTAFFGLNGKGYGS---TYDIDLGLDLAGGVSITYQI 57

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            ED+F +  ++    +L+  ++ +       ++  N+IT+          I  ++     
Sbjct: 58  KEDNFTSQDVEDTIYKLQKRVEGKSTESQVYKEGDNRITVEIPGVTDANEILKELGTPGS 117

Query: 121 GVNSK------LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
                       +       L+T ++ + +   +  N  +   + ++ +    
Sbjct: 118 LEFLDSTGYTAFSQGNDYTPLLTGSDVKAAQAYTDTNSSEDTPYGVQLTFTDD 170


>gi|160878874|ref|YP_001557842.1| SecD/SecF family protein-export membrane protein [Clostridium
           phytofermentans ISDg]
 gi|160427540|gb|ABX41103.1| protein-export membrane protein, SecD/SecF family [Clostridium
           phytofermentans ISDg]
          Length = 734

 Score =  265 bits (676), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 171/668 (25%), Positives = 301/668 (45%), Gaps = 16/668 (2%)

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
           +D+   +           I +      D        G    + F       +        
Sbjct: 73  LDRKATAAELESARNIIDIRLDNKYITDREVTIDKDGGYIIVRFPWKSDEKNYNPEQAIQ 132

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATA--NFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                +  +    +  + + G H+  ++A    +  T   VV++ FD+ GA+ F E T  
Sbjct: 133 EIGAMAQLSFRDPQGNIMLDGKHVVSSSASRRTNNVTTDNVVELIFDKEGAKLFEEATGK 192

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
            IGKP+++ +D  +++AP +N  I  GKA I    T E A  L+  + AG+LP  L    
Sbjct: 193 LIGKPMSIYMDNDLISAPQVNSKITGGKAVIQNIKTYEEAKNLSEKINAGALPFSLTTSS 252

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
            R +   LG++++     A     V + +FMI +Y   G VA   + L ++L L  +S+ 
Sbjct: 253 FRTISPTLGNNALNVMLVAGAIAFVFVCIFMIGIYKLPGFVACLVLILQMVLQLLAISVP 312

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
             TLTLP IAGI+L +G+AVD+NI++ ER+ EE +K  +   ++  G+  A+S++ D N+
Sbjct: 313 QYTLTLPGIAGIILSVGMAVDANIIIAERVSEELKKGATYRSAVTNGYKNAFSSVLDGNV 372

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T     ++L  FG GA+  F  T+ + +++++   + + + +++  +          N  
Sbjct: 373 TTAAVAIILMIFGSGAMLSFGYTLLIGMIVNVLVGVFLSKTILLSFLEMD-----RFNEQ 427

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
             F    +   ++  + ++  + IS    I  I  +   G++    F GG  L       
Sbjct: 428 KYFREQKERKPLKIYQNKWIFLIISGTIFIVGIVGVIIKGVHLDTQFTGGAVLEYSITGN 487

Query: 589 VDLSVVRSNLESLQIGDISFQNFDG---EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           VD   VRS +  +     + Q       + + ++             +       K    
Sbjct: 488 VDTETVRSKVSDVTNRPTTVQITKDNITDSSSVIITLAGTSGLNVAEQEKITGAVKGISD 547

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
              + +  T +V P I  + ++  ++ V+IS I ++IY+WIRF      + A   L+ DI
Sbjct: 548 DLNAKLAQTYVVEPYIGAKALKNAVMAVVISIIFIIIYVWIRFSGLTSGITATLALVHDI 607

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
                 F +FGI  N   VA VLT+IGYS+ND +V+YDR+R+N K       F +L+++S
Sbjct: 608 ITVFFVFVIFGIPLNDAFVAVVLTIIGYSINDTIVIYDRVRENRKKNPK-QDFIELMNES 666

Query: 765 INETLGRSVYTSMAA----FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             +TL RSV TS+       I ++   ++    I  F +PM FG++    SSI IA  + 
Sbjct: 667 NTQTLHRSVNTSITTAVCVLIMLIASIIFRIDSIKVFTLPMLFGLISGCYSSICIAGVLW 726

Query: 821 LFIYDWRA 828
                 + 
Sbjct: 727 TMWEKRKR 734



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/125 (12%), Positives = 34/125 (27%), Gaps = 21/125 (16%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD--FVN 67
              +   + +     NF                ++  G+D+RGG   + E    D     
Sbjct: 32  FIFLFVLLAIFGLGDNFKS------------VQKMRFGIDIRGGVEAIFEPQGLDRKATA 79

Query: 68  GFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRF-----KENIADKVTLFLQ 120
             L+   + +   L  + I     ++ +    I + F           E    ++    Q
Sbjct: 80  AELESARNIIDIRLDNKYITDREVTIDKDGGYIIVRFPWKSDEKNYNPEQAIQEIGAMAQ 139

Query: 121 GVNSK 125
                
Sbjct: 140 LSFRD 144


>gi|288958294|ref|YP_003448635.1| preprotein translocase SecD subunit [Azospirillum sp. B510]
 gi|288910602|dbj|BAI72091.1| preprotein translocase SecD subunit [Azospirillum sp. B510]
          Length = 532

 Score =  264 bits (674), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 227/527 (43%), Positives = 325/527 (61%), Gaps = 6/527 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W + +    C  G ++ LPNFL +  L   PS     R+SLGLDLRGGSHL+LEVD  
Sbjct: 5   SRWKIYMILATCLAGFILILPNFLGRDTLAALPSWYANTRVSLGLDLRGGSHLLLEVDMA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   ++   D  R  L+   +G  ++   +  +T+   D    +     +      V 
Sbjct: 65  TVIRDRVEGLVDGARQQLRTANVGYTALNAGERSLTVQLRDPAQADEAVKALRQLSSPVG 124

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                  + +L VT     +++ LS+  +    + AIEQS+EI+R+RID+ G++E TI R
Sbjct: 125 RSALGVGQPDLDVTVNGGTVTLALSEVALRDRATQAIEQSIEIVRRRIDETGVNEPTIAR 184

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR------FLRDSD 237
            G+ RIL+QLPG +DP R+++LLGTTAKM+F  V  N                    D  
Sbjct: 185 QGNDRILVQLPGVEDPDRIKRLLGTTAKMTFRLVDVNADPSTGRAPPGSEILPSAEGDRY 244

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            ++Y++  KVE+ G  L  A+A  +P+T + VV+  F+  GA RF EVT+ N+G+P A+V
Sbjct: 245 QSKYVIRKKVEVDGATLQNASAGTNPQTGEWVVNFEFNSAGANRFAEVTKQNVGRPFAIV 304

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +V++APVI + I  G+ QISGNFT   A  LA +LRAG+LP  L ++EER VG DLG
Sbjct: 305 LDNKVISAPVIREPITGGRGQISGNFTAANANDLAVLLRAGALPAPLKVIEERTVGPDLG 364

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +DSI  G  A+V G V++ ++MI  YG +G  A  ++F+N++LTLA LSLL ATLTLP I
Sbjct: 365 ADSIRAGLTAVVVGFVMVCIYMIASYGLFGAFACSALFVNLVLTLAALSLLHATLTLPGI 424

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG++L +GLAVD+NIL+NERIREE +K + VF S++ GFSRAYSTI DSN+T  I   +L
Sbjct: 425 AGVLLSLGLAVDANILINERIREETKKGRGVFASMEAGFSRAYSTIVDSNLTTAIKMALL 484

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           F FG G ++GFA+T+   ILISMFTA  +VR MM+  +R  +  ++ 
Sbjct: 485 FIFGTGTIKGFAVTITFGILISMFTATVLVRLMMVTWLRRTRPAALP 531



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 77/172 (44%), Gaps = 4/172 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR G+  V++  + + IY+   +   F   A + L +++  TL   +L    
Sbjct: 360 GPDLGADSIRAGLTAVVVGFVMVCIYMIASYGL-FGAFACSALFVNLVLTLAALSLLHAT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A VL  +G +V+  +++ +R+R+  K           ++   +      V +++
Sbjct: 419 LTLPGIAGVLLSLGLAVDANILINERIREETK---KGRGVFASMEAGFSRAYSTIVDSNL 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              I +  + ++G   I  FA+ + FGI+++  ++  +   +++        
Sbjct: 476 TTAIKMALLFIFGTGTIKGFAVTITFGILISMFTATVLVRLMMVTWLRRTRP 527


>gi|148255766|ref|YP_001240351.1| preprotein translocase subunit SecD [Bradyrhizobium sp. BTAi1]
 gi|146407939|gb|ABQ36445.1| protein-export membrane protein secD [Bradyrhizobium sp. BTAi1]
          Length = 533

 Score =  263 bits (672), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 205/529 (38%), Positives = 318/529 (60%), Gaps = 9/529 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +   +   +  L A+PNF P++ +  +P+   +  I LGLDL+GGS+L+LEVD + 
Sbjct: 6   RWKALGIILTALVVCLCAVPNFFPEATVKTWPAWA-QRHIVLGLDLQGGSYLLLEVDSNF 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                L    D++R  L+   IG   +    + + +             K+    Q +  
Sbjct: 65  VKKERLDAVRDDVRRTLRDAKIGYTGLVSRGDGVEVRITKDTDAPTALSKLRELSQPLGG 124

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            L    +++L +       I + + Q  I + I   IEQS++I+ +R++++G  E  IQR
Sbjct: 125 LLGSSGQRSLEVSDAGGGLIRLTIPQAAITERIRQTIEQSIQIVERRVNELGTVEPVIQR 184

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237
            G+ RIL+Q+PG QDP++L+ LLG TAKM F  V  +      + G              
Sbjct: 185 QGTDRILVQVPGLQDPTQLKDLLGKTAKMEFRMVDTSVPPDQALQGRVPPDSEVLQSASP 244

Query: 238 -GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y+V+ +V +SG  L+ A   FD +T++P+V   F+  G+R+F + T +N+G+P A+
Sbjct: 245 PNQPYVVKKQVLVSGGDLSDAQTGFDQRTNEPIVTFRFNSAGSRKFAQATTENVGQPFAI 304

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLD +V++APVI + I  G  QISGNFT+++A  LA +LRAG+LP  L ++EER VG  L
Sbjct: 305 VLDNKVISAPVIREPITGGSGQISGNFTVQSANELAILLRAGALPAPLTVIEERTVGPGL 364

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G+DSI KG  A   G +L+++FM+V Y  +G+ A+ ++ +NV +   +LSLL ATLTLP 
Sbjct: 365 GADSIAKGELASYVGSILVIVFMLVTYRLFGVFANIAVIINVAMIFGVLSLLNATLTLPG 424

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA +TI DSNIT  IA  V
Sbjct: 425 IAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFIAAAV 484

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF+ G G VRGFA+T+G+ IL ++FTA ++ R ++ + +R+K+ +S+ I
Sbjct: 485 LFYIGTGPVRGFAVTLGVGILTTVFTAFTLTRLIVAWWVRWKRPQSVPI 533



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 83/174 (47%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I KG +   + +I +++++ + ++  F + A   +I+++    G  +L    
Sbjct: 361 GPGLGADSIAKGELASYVGSILVIVFMLVTYRL-FGVFANIAVIINVAMIFGVLSLLNAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++    +IS    ID      L   + +++
Sbjct: 420 LTLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAIS---AIDAGFKRALATILDSNI 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FI+   +   G   +  FA+ +  GI+    ++  +   I+ +   W+   +
Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGVGILTTVFTAFTLTRLIVAWWVRWKRPQS 530


>gi|75675961|ref|YP_318382.1| preprotein translocase subunit SecD [Nitrobacter winogradskyi
           Nb-255]
 gi|74420831|gb|ABA05030.1| SecD/SecF/SecDF export membrane protein [Nitrobacter winogradskyi
           Nb-255]
          Length = 532

 Score =  263 bits (672), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 200/528 (37%), Positives = 311/528 (58%), Gaps = 8/528 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +   +      L A+PNF P++ +  +P    +  + LGLDL+GGS+L+LEVD + 
Sbjct: 6   RWKALTIIVTALAICLCAVPNFFPEAQVKTWPKWA-QRHLVLGLDLQGGSYLLLEVDSNY 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                L    D+ R  L+   I    +      + +  +     +    K+    Q +  
Sbjct: 65  VKKEKLDQVRDDARKTLRDARIAYTGLAAKNGAVEVRISKEEEFQTALAKLRELSQPLGG 124

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
            L    +++L V++ +  I + + Q  +   I  ++EQS++II +R++++G  E  IQR 
Sbjct: 125 LLGSSGQRSLEVSSADGVIRMTVPQAAVTDRIRQSVEQSIQIIEKRVNELGTVEPLIQRQ 184

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDSD 237
           G+ RIL+Q+PG QDP+RL+++LG TAKM F  V  +        G             + 
Sbjct: 185 GADRILVQVPGLQDPTRLKEILGKTAKMDFRMVDSSIPPDQAAQGRVPGDSEVLMSSQAP 244

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y+V  +V +SG  L  A   FD +T +P+V   F+  GAR+F + T +N+G+P A++
Sbjct: 245 KTPYVVRKQVLVSGGDLTDAQPGFDSRTSEPIVTFRFNSNGARKFAQATTENVGQPFAII 304

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD  V++APVI + I  G  QISGNFT++ A  LA +LRAG+LP  L I+EER VG  LG
Sbjct: 305 LDNEVISAPVIREPITGGSGQISGNFTVQEANDLAILLRAGALPAPLTIIEERTVGPGLG 364

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            DSI +G  A   G ++++LFM++ Y  +G++A+ ++ +NV +   +LSLL ATLTLP I
Sbjct: 365 QDSIEQGELAAYVGSIMVILFMLLTYRFFGVIANIAVAINVAMIFGVLSLLNATLTLPGI 424

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA +TI DSNIT  IA  VL
Sbjct: 425 AGIVLTVGIAVDSNVLIYERIREELRAGRTAISAIDAGFKRALATILDSNITTFIAAAVL 484

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           F+ G G VRGFA+T G+ I+ ++FTA  + R ++   +R+K+ +++ I
Sbjct: 485 FYIGTGPVRGFAVTFGIGIITTVFTAFEVTRLIVATWVRWKRPQTVPI 532



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 82/173 (47%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I +G +   + +I +++++ + +++ F + A   + +++    G  +L    
Sbjct: 360 GPGLGQDSIEQGELAAYVGSIMVILFMLLTYRF-FGVIANIAVAINVAMIFGVLSLLNAT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++   T+IS    ID      L   + +++
Sbjct: 419 LTLPGIAGIVLTVGIAVDSNVLIYERIREELRAGRTAIS---AIDAGFKRALATILDSNI 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FI+   +   G   +  FA+    GI+    ++  +   I+     W+   
Sbjct: 476 TTFIAAAVLFYIGTGPVRGFAVTFGIGIITTVFTAFEVTRLIVATWVRWKRPQ 528


>gi|320527508|ref|ZP_08028688.1| protein-export membrane protein SecD [Solobacterium moorei F0204]
 gi|320132065|gb|EFW24615.1| protein-export membrane protein SecD [Solobacterium moorei F0204]
          Length = 766

 Score =  263 bits (671), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 171/705 (24%), Positives = 326/705 (46%), Gaps = 32/705 (4%)

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              I+     +++  +  +   +  I +RI+ +G+SE  I   G++R+ +Q+ G +D   
Sbjct: 45  GFEILYQVEPLNEGATVDMSAVINSISKRINVLGVSEPQITVEGNNRVRVQIAGAKDLET 104

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
            R+L+GTTA ++F  V  N      +        +  +   +              T   
Sbjct: 105 ARELIGTTANLTFRDVDNNELADSSILQEGGASLAYKDGEPIVSLKIADKEKFAAMTKAI 164

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
             K     V I + +     + +          A   +     +    Q+  +G   ISG
Sbjct: 165 AKKGKGANVMIVWLD-----WQDGDTYAAEAAKAKNGEEPKYISAASVQSEINGDCIISG 219

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
           NFT ++A  LA ++ +GSLP+KL  +    V A  G+D++     A V G+ ++++ MI 
Sbjct: 220 NFTEDSARTLANLINSGSLPVKLTELSSNVVSASYGADALQVTALAGVIGVAIVMVVMIF 279

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           +Y   GL++   +   V     + SL+GA  TL  I  +VLG+G+ VD+NI+  ERIR+E
Sbjct: 280 VYRLPGLISSIMLAFYVWAVFGIYSLMGAVFTLSGIGALVLGVGMTVDANIINYERIRQE 339

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
             K +SV  ++  G   +++ IFD+  T L+A ++++ +G G V+GFA  + +++++++ 
Sbjct: 340 LYKGRSVRAAVAEGGKLSFAAIFDAQFTTLLAALIMYIWGTGTVKGFATMLIITVVMTLL 399

Query: 502 TAISIVRAMMIFIIRYKK-----------MKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +   + ++  I+                  I                  +M    + V
Sbjct: 400 LNVGFSKWLLSLIVDSGICDGKPGLFAVKKNQIPDVSKGEKQFYTGAFKFDYMGKAKYAV 459

Query: 551 GISILFSICSICLLFTH------GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
             S+   + S+ L F +       LN GIDF  G +L V + + V++S V + +E+L   
Sbjct: 460 AASVSIIVLSLALSFFNLAKGNGFLNLGIDFASGTKLTVTSEQIVNVSDVEAEMETLGYK 519

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
             S+Q+                 + A     ++   K              IV P +  E
Sbjct: 520 GFSYQSAGE--------HTVYATTKASLDKEQLTTIKSAFEKKYGVEPGDNIVTPVVGSE 571

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L+R  ++  +++ IAML YI  R+++ +A G +  L+ D+      F +  +E N+  ++
Sbjct: 572 LVRSAVILTVVAWIAMLAYITFRYEFDYAFGCLVALVHDVLIVTAVFGILRLEVNIELIS 631

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS--FRDLIDKSINETLGRSVYTSMAAFIS 782
            +LT+IGYS+N+ ++V+DR+R+ + L        +R + +++I+E +  S+ +S+   I 
Sbjct: 632 VLLTIIGYSINNSIIVFDRVREEVNLRNRIEPTEYRSIANEAIDEAIKMSLMSSLTTIIP 691

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           V+ + + G S I +F   M  G++   SSS+F+AA I   + +  
Sbjct: 692 VILLLIMGSSSIFTFVFAMLIGLIAGTSSSVFVAAYIWCLLREKS 736



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 56/475 (11%), Positives = 130/475 (27%), Gaps = 15/475 (3%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG- 68
           L   +  + LL  L     +S++           ++LGLDLRGG  ++ +V+  +     
Sbjct: 11  LAVFVLIVLLLGTLIGTTIRSIISS---------LNLGLDLRGGFEILYQVEPLNEGATV 61

Query: 69  FLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKL- 126
            +    + +   +   G+    +  +  N++ +  A ++  E   + +          + 
Sbjct: 62  DMSAVINSISKRINVLGVSEPQITVEGNNRVRVQIAGAKDLETARELIGTTANLTFRDVD 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
           N +   + ++      ++    +  +   I+   + +           G +   +     
Sbjct: 122 NNELADSSILQEGGASLAYKDGEPIVSLKIADKEKFAAMTKAIAKKGKGANVMIVWLDWQ 181

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL--VE 244
                     +  +       + A +             F         +  N     V+
Sbjct: 182 DGDTYAAEAAKAKNGEEPKYISAASVQSEINGDCIISGNFTEDSARTLANLINSGSLPVK 241

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
                S +      A+    T    V      M    F       I   +       V  
Sbjct: 242 LTELSSNVVSASYGADALQVTALAGVIGVAIVMVVMIFVYRLPGLISSIMLAFYVWAVFG 301

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
              +  A+ +     +    +        +               R   A+ G  S    
Sbjct: 302 IYSLMGAVFTLSGIGALVLGVGMTVDANIINYERIRQELYKGRSVRAAVAEGGKLSFAAI 361

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             A    L+  ++  I   G     A   I   V+  L  +      L+L   +GI  G 
Sbjct: 362 FDAQFTTLLAALIMYIWGTGTVKGFATMLIITVVMTLLLNVGFSKWLLSLIVDSGICDGK 421

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
                        + +  ++  +     D    +A   +  S    +++  + FF
Sbjct: 422 PGLFAVKKNQIPDVSKGEKQFYTGAFKFD-YMGKAKYAVAASVSIIVLSLALSFF 475


>gi|254500330|ref|ZP_05112481.1| protein-export membrane protein SecD [Labrenzia alexandrii DFL-11]
 gi|222436401|gb|EEE43080.1| protein-export membrane protein SecD [Labrenzia alexandrii DFL-11]
          Length = 536

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 198/531 (37%), Positives = 321/531 (60%), Gaps = 10/531 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W + L  ++   G++  LPNF     L+ +P  +PKN++ LGLDL+GG++L+ E+D+ D
Sbjct: 6   RWKIALIVLVVAAGIVTTLPNFFSAKTLESWPDFLPKNQMVLGLDLQGGAYLLYEIDQQD 65

Query: 65  FVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           ++   ++    ++R+ L++   IG   +    +   +   D        +++   +  + 
Sbjct: 66  YIEKRMKALVGDIRAALRENPRIGYTGLGVQGDAAQVRIRDLTRLAEAEERLEPLVNPLV 125

Query: 124 SKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           S +       +  L  + +  +    S   +   +++ ++QS+E+IR+R+D++G +E  I
Sbjct: 126 SNVFSGQQVDEFELSVSDDGLVRFTYSDQGLTDRMTNIVQQSIEVIRRRVDELGTTEPNI 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234
           QR G+ RIL++ PGE DP RL+ L+G TA+++FH V  + S    M     +        
Sbjct: 186 QRQGTDRILVEAPGEDDPERLKDLVGQTAQLTFHMVDTSMSGDQAMQSRPPVGTVVMMSV 245

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           D     YL+E+   ++G  L  A  +FD ++++PVV+  F+  GAR+F  VT+ N+G+P 
Sbjct: 246 DDPPLPYLLEETPLLAGEDLVDAQVSFDQRSNEPVVNFRFNTSGARKFATVTQQNVGRPF 305

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A+VLD  V++APVI + I  G  QISGNFT+E A  LA +LRAG+LP KL ++EER++G 
Sbjct: 306 AIVLDEEVISAPVIREPITGGSGQISGNFTVEGANDLAVLLRAGALPAKLTVIEERSIGP 365

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG+DSI  G  A +    L+++FMI+ YG++G++AD ++  N+ L    L+ L ATLTL
Sbjct: 366 GLGADSIEAGKMASIIAGALVIIFMILAYGRFGVIADVALVGNMFLIFGALTALQATLTL 425

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL IG+AVD+N+L+ ERIREE R  +S   ++D G+ RA  TI D+NIT LIA 
Sbjct: 426 PGIAGIVLTIGMAVDANVLIFERIREEARAGRSAITAIDAGYKRALGTILDANITTLIAA 485

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           V+LF  G G VRGFA+T+ + I  ++F+A +  R M+   +RY++   + I
Sbjct: 486 VILFQLGSGPVRGFAVTLAIGIFTTVFSAFTFSRLMVALWVRYRRPSVLPI 536



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 78/176 (44%), Gaps = 5/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G +  II+   ++I++ + +   F + A   L+ ++    G      
Sbjct: 362 SIGPGLGADSIEAGKMASIIAGALVIIFMILAYG-RFGVIADVALVGNMFLIFGALTALQ 420

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++++R+R+  +      S    ID      LG  +  
Sbjct: 421 ATLTLPGIAGIVLTIGMAVDANVLIFERIREEARA---GRSAITAIDAGYKRALGTILDA 477

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   I+ + +   G   +  FA+ +A GI     S+ F  + +++ ++    + +
Sbjct: 478 NITTLIAAVILFQLGSGPVRGFAVTLAIGIFTTVFSA-FTFSRLMVALWVRYRRPS 532


>gi|331694403|ref|YP_004330642.1| protein-export membrane protein SecD [Pseudonocardia dioxanivorans
           CB1190]
 gi|326949092|gb|AEA22789.1| protein-export membrane protein SecD [Pseudonocardia dioxanivorans
           CB1190]
          Length = 761

 Score =  262 bits (669), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 190/731 (25%), Positives = 346/731 (47%), Gaps = 32/731 (4%)

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           + G  +          L      +I +           + A ++ +E++R R+D +G++E
Sbjct: 19  VGGATALALTGSPTLGLDLRGGTQIVLETRDAPDVVADAAATDRVLEVLRGRVDGLGVAE 78

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
            ++ R G  RI+++LPG QDP+    +LG TA+++ H V                 D  G
Sbjct: 79  PSLTRSGEDRIVVELPGLQDPAEAADVLGRTAQLTIHPV-------LATTAGEATVDETG 131

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD---------- 288
              +V     +     +    +        VVD+SF   G  R+  +T            
Sbjct: 132 APIVVGPAALVGEDVDSARATSGVQGVLGSVVDVSFSAEGGDRWQALTAQTACAAPGDPA 191

Query: 289 ---NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
               I     V+   +V  +      +  G  QISG+F+ E A  LA +++ G+LP+ + 
Sbjct: 192 RRIAIVLDSQVISSPQVDPSIGCGVGMYGGSTQISGSFSQEQASELAVLIQGGALPVPVE 251

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           I+E+R VG  LG+ +I   T A + G  L  LF++V Y   GLVA  ++    ++  A L
Sbjct: 252 IIEQRTVGPTLGASAIEASTLAALVGTALTALFLLVAYRLAGLVAVVALAGYAVVAYAGL 311

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             LGATLTLP +AG VL IG+AVD+N+LV ER REE  +   +  + ++G+  A++ + D
Sbjct: 312 IALGATLTLPGLAGFVLAIGMAVDANVLVAERAREEYARRPRLERASELGYRGAFTAVVD 371

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           S +T L+A  +LF+   G VRGF +T+ L +++S+F+A+ + R + I+++R   ++    
Sbjct: 372 SAVTTLLAGALLFWLASGPVRGFGVTLTLGVVVSLFSALVLSRLLTIWLLRRGAVRRRPR 431

Query: 526 NP----LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                 +       + ++   +R     +  S +  + ++  +   GL+ G++F GG  +
Sbjct: 432 WTGLATIGPVRRRLERVSPDILRPAGRLLACSAVVVVVALAGIALRGLDLGVEFTGGRSV 491

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                 PVD    R+ +    +G +  Q                  +      +  ++  
Sbjct: 492 EFSTTNPVDADAARAAVAEAGLGGLPVQTTGDGG-------IAVRGNDIDDADVAALRAS 544

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +      + ++  E++GP +  EL R  ++ + ++ +A L+Y+ IRF+W F  GA+  L 
Sbjct: 545 LAAAGGGAQVEQDELIGPSLGAELARGALIALGVALLAQLVYLAIRFRWTFGAGAVAALA 604

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            +++  +G+FA  G   +   VAA+LT+IGY+VND VVV+D   +  +       F  + 
Sbjct: 605 TNVSIVVGWFAWTGRTIDGVFVAALLTVIGYTVNDSVVVFD-RIRAERAGRRREPFHRVA 663

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             ++  TL R+V T ++  + +  + V GG  +  FA+ +  GIV    S++ +A P+ +
Sbjct: 664 GSAVLSTLPRTVNTGLSTLVILGALLVLGGETLADFALALILGIVAGTVSTVTVAVPLAI 723

Query: 822 FIYDWRAKNAR 832
            +        R
Sbjct: 724 VLQRRFGDRDR 734



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 6/209 (2%)

Query: 46  LGLDLRGGSHLVLEVDEDDFVNGF---LQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLS 101
           LGLDLRGG+ +VLE  +   V           + LR  +   G+   S+ +   ++I + 
Sbjct: 33  LGLDLRGGTQIVLETRDAPDVVADAAATDRVLEVLRGRVDGLGVAEPSLTRSGEDRIVVE 92

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-VISHAI 160
               +     AD +    Q     +         V  T   I +  +    +    + A 
Sbjct: 93  LPGLQDPAEAADVLGRTAQLTIHPVLATTAGEATVDETGAPIVVGPAALVGEDVDSARAT 152

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
                ++   +D    +E   +               DP+R   ++  +  +S  +V P+
Sbjct: 153 SGVQGVLGSVVDVSFSAEGGDRWQALTAQTACAAP-GDPARRIAIVLDSQVISSPQVDPS 211

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
                 M+G         +Q    +   +
Sbjct: 212 IGCGVGMYGGSTQISGSFSQEQASELAVL 240


>gi|316934006|ref|YP_004108988.1| protein-export membrane protein SecD [Rhodopseudomonas palustris
           DX-1]
 gi|315601720|gb|ADU44255.1| protein-export membrane protein SecD [Rhodopseudomonas palustris
           DX-1]
          Length = 533

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 202/530 (38%), Positives = 313/530 (59%), Gaps = 9/530 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W  +   +   I  L A+PNF P+S +  +P    +  + LGLDL+GGSH++LEVD +
Sbjct: 5   SRWKALAIILTALIVCLCAVPNFFPESTVKNWPKWA-QRHLVLGLDLQGGSHILLEVDAN 63

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 L+   D+ R  L++  I    +    + + +             K+    Q + 
Sbjct: 64  SVKKDKLESVRDDARRVLREARIAYTGLSTKGDSVEVRITKDTDVPTALTKLRELSQPLG 123

Query: 124 SKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             L  + ++NL +       I + + Q  I   +  +++QS++I+ +R++++G  E  IQ
Sbjct: 124 GLLGSNGQRNLEVSDAGGGLIRLTVPQAAISDRVRQSVDQSIQIVERRVNELGTVEPLIQ 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------- 235
           R G+ RIL+Q+PG QDP+RL++LLG TAK+ F  V  + S    M G             
Sbjct: 184 RQGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDASVSGDQAMAGNVPSDSELLMSAS 243

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S    Y+++ +V +SG  L  A   FD ++ +P+V   F+  GAR+F   T +N+G P A
Sbjct: 244 SPKQPYVIKKQVLVSGADLTDAQPGFDQRSGEPIVSFRFNTNGARKFARATTENVGLPFA 303

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD  V++APVI + I  G  QISG+FT++ A  LA +LRAG+LP  L I+EER VG  
Sbjct: 304 IVLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPG 363

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI KG  A   G +L+++FM++ Y  +G+ A+ ++ +NV +   +LS+L ATLTLP
Sbjct: 364 LGQDSIEKGERAAYVGSILVIVFMLLTYRLFGVFANIAVAVNVAMIFGILSMLNATLTLP 423

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA STI DSNIT  IA  
Sbjct: 424 GIAGIVLTVGIAVDSNVLIYERIREELRSGRNAISAIDAGFKRALSTILDSNITTFIAAA 483

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           VLF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++   +R+K+ + + I
Sbjct: 484 VLFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVAAWVRWKRPQVVPI 533



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 99/263 (37%), Gaps = 10/263 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
              G   +    N        R+  E++ +      + +     ++R     G       
Sbjct: 271 QRSGEPIVSFRFNTNGARKFARATTENVGLPFAIVLDNEVISAPVIREPITGGSGQISGS 330

Query: 634 VLEMVKKKIT------EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                   +        +    TI     VGP + ++ I KG     + +I +++++ + 
Sbjct: 331 FTVQGANDLAILLRAGALPAPLTIIEERTVGPGLGQDSIEKGERAAYVGSILVIVFMLLT 390

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F + A   + +++    G  ++      L  +A ++  +G +V+  V++Y+R+R+ 
Sbjct: 391 YRL-FGVFANIAVAVNVAMIFGILSMLNATLTLPGIAGIVLTVGIAVDSNVLIYERIREE 449

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++   +  +    ID      L   + +++  FI+   +   G   +  FA+ +  GI+ 
Sbjct: 450 LR---SGRNAISAIDAGFKRALSTILDSNITTFIAAAVLFYIGTGPVRGFAVTLGIGIIT 506

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
              ++  +   I+     W+   
Sbjct: 507 TVFTAFTVTRLIVAAWVRWKRPQ 529


>gi|298291858|ref|YP_003693797.1| protein-export membrane protein SecD [Starkeya novella DSM 506]
 gi|296928369|gb|ADH89178.1| protein-export membrane protein SecD [Starkeya novella DSM 506]
          Length = 532

 Score =  262 bits (668), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 210/529 (39%), Positives = 319/529 (60%), Gaps = 8/529 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W       +  I  L+ +P+ LP  + D  P  + + +I LGLDL+GGS++VL+VD +
Sbjct: 5   SKWKAFAILAVSAIICLMVVPSLLPPKVYDSLPGFL-QRKIVLGLDLQGGSYIVLQVDSN 63

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           +     L+   D+ R  L+   +G   +    N + +   D +  +    ++    Q + 
Sbjct: 64  EVRTARLEQLRDDARRVLRDAKVGYTGLNIQGNSVQVRIRDGQDADAAFTQLRTLAQPIG 123

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L+   + +  V      I++  S   +      A+ QS+EIIR+RIDQ+G +E +IQR
Sbjct: 124 GALSTSGQLDTDVARDGNVITLTPSTAGVQSRTIQAVSQSIEIIRKRIDQLGTTEPSIQR 183

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------RDS 236
            G+ RI +Q+PG QDPSRL+ LLG TAK++F  V  + + +  + G           +D+
Sbjct: 184 QGADRIQVQVPGLQDPSRLKALLGQTAKLTFRLVDNSMTAQQALQGRPPAGTEVLYSQDN 243

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               YL+E +V ++G  L  A   FDP+T +P+V   F+  GARRF E T+ N+G+P A+
Sbjct: 244 PPVPYLIEQRVLVAGEDLTDAQPGFDPQTREPIVTFRFNTNGARRFAEATQANVGRPFAI 303

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           +LD  V++APVI + I  G  QISGNFT++ A  LA +LRAG+LP+ L +VEER VG  L
Sbjct: 304 ILDNHVISAPVIREPILGGSGQISGNFTVQQANDLAILLRAGALPVPLQVVEERTVGPGL 363

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G+DSI  G  A + G   + LFMI  YG +G++A  ++ +NV +   +L++LGATLTLP 
Sbjct: 364 GADSIRAGLIASIVGASAVALFMIATYGLFGVIAVVAVAINVGMIFGVLAMLGATLTLPG 423

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG+VL +G+AVDSN+L+ ERIREE R  +S   ++D GF+RA +TI DSNIT  IA  V
Sbjct: 424 IAGVVLTVGIAVDSNVLIYERIREEARAGRSAISAIDAGFTRALATILDSNITTFIAAAV 483

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF+ G G VRGFAIT G+ I+ ++FTA ++ R M    +R+++ + + I
Sbjct: 484 LFYIGSGPVRGFAITFGIGIITTVFTAFTLTRLMAAVWVRWRRPQRVPI 532



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 80/176 (45%), Gaps = 5/176 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR G++  I+ A A+ +++   +   F + A+  + +++    G  A+ G  
Sbjct: 360 GPGLGADSIRAGLIASIVGASAVALFMIATYGL-FGVIAVVAVAINVGMIFGVLAMLGAT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A V+  +G +V+  V++Y+R+R+  +      S    ID      L   + +++
Sbjct: 419 LTLPGIAGVVLTVGIAVDSNVLIYERIREEARA---GRSAISAIDAGFTRALATILDSNI 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FI+   +   G   +  FAI    GI+    ++ F    ++  ++    +  R+
Sbjct: 476 TTFIAAAVLFYIGSGPVRGFAITFGIGIITTVFTA-FTLTRLMAAVWVRWRRPQRV 530


>gi|115524913|ref|YP_781824.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris
           BisA53]
 gi|115518860|gb|ABJ06844.1| protein-export membrane protein SecD [Rhodopseudomonas palustris
           BisA53]
          Length = 533

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 198/529 (37%), Positives = 308/529 (58%), Gaps = 9/529 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +   +      L A+PNF P++ +  +P    +  + LGLDL+GGSH++LEVD + 
Sbjct: 6   RWKALGIILTALAICLCAVPNFFPEATVKSWPKWA-QRHLVLGLDLQGGSHILLEVDSNS 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                L    D++R  L+   I    +    + + +  +    +     K+    Q +  
Sbjct: 65  VKKDKLDQVRDDVRRTLRDAKIPYTGLSARADAVEVRISRDTDQATALTKLRELSQPLGG 124

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +    +++L +         + ++Q  I + I  ++EQS++I+ +R++++G  E  IQR
Sbjct: 125 LMGTSGQRSLDVSDAGGGLFKLTVTQAAITERIRQSVEQSIQIVERRVNELGTVEPLIQR 184

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------- 236
            G  RIL+Q+PG QDP+RL++LLG TAK+ F  V    S      G              
Sbjct: 185 QGIDRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSTVSGDQARLGNVPADSDLLLGAQA 244

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y+++ ++ +SG  L  A   FD ++ +P+V   F+  GAR+F   T +N+G+P A+
Sbjct: 245 PKQPYVIKKQILVSGGDLTDAQPGFDQRSGEPIVSFRFNTSGARKFAVATTENVGQPFAI 304

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLD  V++APVI + I  G  QISG+FT++ A  LA +LRAG+LP  L I+EER VG  L
Sbjct: 305 VLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPGL 364

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G DSI KG  A   G +L+++FM++ Y  +G+ A+ ++ +NV +   +LSLL ATLTLP 
Sbjct: 365 GQDSIEKGELAAYIGSILVIIFMLLTYRLFGVFANIAVAINVAMIFGVLSLLNATLTLPG 424

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA +TI DSNIT  IA  V
Sbjct: 425 IAGIVLTVGIAVDSNVLIYERIREEIRNGRTAISAIDAGFKRALATILDSNITTFIAAAV 484

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF+ G G VRGFA+T+G+ IL ++FTA ++ R ++   +R K+  S+ I
Sbjct: 485 LFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVATWVRVKRPHSVPI 533



 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 80/174 (45%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I KG +   I +I ++I++ + ++  F + A   + +++    G  +L    
Sbjct: 361 GPGLGQDSIEKGELAAYIGSILVIIFMLLTYRL-FGVFANIAVAINVAMIFGVLSLLNAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++      +    ID      L   + +++
Sbjct: 420 LTLPGIAGIVLTVGIAVDSNVLIYERIREEIR---NGRTAISAIDAGFKRALATILDSNI 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FI+   +   G   +  FA+ +  GI+    ++  +   I+      +  ++
Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGILTTVFTAFTLTRLIVATWVRVKRPHS 530


>gi|16126234|ref|NP_420798.1| preprotein translocase subunit SecD [Caulobacter crescentus CB15]
 gi|221235007|ref|YP_002517443.1| preprotein translocase subunit SecD [Caulobacter crescentus NA1000]
 gi|13423458|gb|AAK23966.1| protein-export membrane protein SecD [Caulobacter crescentus CB15]
 gi|220964179|gb|ACL95535.1| protein translocase subunit secD [Caulobacter crescentus NA1000]
          Length = 532

 Score =  261 bits (667), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 187/530 (35%), Positives = 307/530 (57%), Gaps = 10/530 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W ++L +     G+L  LPN LPQ  LD FP  +PK +++LGLDL+GGS+L+ EVD D
Sbjct: 5   SRWKIVLVTFSVIFGILFTLPNLLPQKTLDSFPDWLPKQKLNLGLDLQGGSYLMYEVDTD 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 L+   +++R+ L+ E I    + ++   + L  AD+   +  A+ +   +    
Sbjct: 65  ALRKERLKNLVEDVRTVLRGEQITFGELAEVNGTVRLRIADAAKVDEAANLLRRSVGSPF 124

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +      +   +    ++ + +        Q  S A++QS+E IR+RID +G  E  I R
Sbjct: 125 AGSISG-RDVSVDKRDDQRLELSFIPEAAAQDASMAVDQSIETIRRRIDTLGTKEPNITR 183

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-------VRFLRDS 236
            G+ RI+IQ  GE DP RL+ ++G TAK++F  V  + + +    G            D 
Sbjct: 184 QGADRIVIQAAGESDPERLKAVVGKTAKLTFQMVDDSVTPEDIAAGRIPPGSEALPSDDR 243

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y+V  +  +SG  L  +  +FD +   P V   F+  G+R+F + T  N+GK  A+
Sbjct: 244 YQAAYVVRKRALVSGDELVDSRQSFDDRG-APAVSFKFNGSGSRKFGDATARNVGKRFAI 302

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLDGR+++AP IN AI  G   I+G+FT E+A  LA +LR+G+LP  L + ++  VGA+L
Sbjct: 303 VLDGRIISAPTINGAILGGSGIITGSFTAESASDLALLLRSGALPAPLKVEQQNTVGAEL 362

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           G+D++  G  + +   + IV+FMI+ YG  +G ++  ++ +N +L +A +SL  ATLTLP
Sbjct: 363 GADAVRAGAISTLVAFITIVVFMILSYGLLFGGISVIALIINGMLIVAAMSLTQATLTLP 422

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAG++L + +AVD+N+L+ ER+R+E R  +S   + D GFSRA +TI D+N+T L+A  
Sbjct: 423 GIAGLILTLAVAVDANVLIYERMRDEARAGKSPILAADAGFSRAMTTIIDANVTTLVAAG 482

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           ++F FG G VRGFA T+ + +  S+FTA+ + + ++ +  R  + K + I
Sbjct: 483 IMFAFGAGPVRGFAWTLSIGVFTSVFTAVLVSQLLIGWWFRAARPKKLPI 532



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 82/182 (45%), Gaps = 4/182 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +    VG ++  + +R G +  +++ I +++++ + +   F   ++  LI++    +   
Sbjct: 353 EQQNTVGAELGADAVRAGAISTLVAFITIVVFMILSYGLLFGGISVIALIINGMLIVAAM 412

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L      L  +A ++  +  +V+  V++Y+RMR   +      S     D   +  +  
Sbjct: 413 SLTQATLTLPGIAGLILTLAVAVDANVLIYERMRDEARA---GKSPILAADAGFSRAMTT 469

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  ++   ++   M  +G   +  FA  ++ G+  +  +++ + + +L+  +   A+  
Sbjct: 470 IIDANVTTLVAAGIMFAFGAGPVRGFAWTLSIGVFTSVFTAVLV-SQLLIGWWFRAARPK 528

Query: 832 RI 833
           ++
Sbjct: 529 KL 530


>gi|295688851|ref|YP_003592544.1| protein-export membrane protein SecD [Caulobacter segnis ATCC
           21756]
 gi|295430754|gb|ADG09926.1| protein-export membrane protein SecD [Caulobacter segnis ATCC
           21756]
          Length = 532

 Score =  261 bits (666), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 185/528 (35%), Positives = 306/528 (57%), Gaps = 7/528 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W +I  ++    G+L +LPN LPQ  LD  P+ +P  +++LGLDL+GGS+L+ EVD +
Sbjct: 5   SRWKIIAVTLSVVFGILFSLPNVLPQKTLDAMPAWLPHQKLNLGLDLQGGSYLLYEVDTE 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 L    ++ R+ L+ E I    + Q    I++   D     +  + +   L G  
Sbjct: 65  ALHRERLSNLMEDTRTQLRSEQIPFGELNQQGEIISVRIGDPARYNDALNLLRKNL-GAP 123

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
               +  K   +    +  I +      I      A++QS+E IR+RID +G  E +I R
Sbjct: 124 LAGAIGGKDVSVSGKGDNRIEVRFVPEAIKADAVKAVDQSIETIRRRIDSLGTKEPSINR 183

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF------LRDSD 237
            G +RI+IQ PGE DP +LR ++G TAK++F  V    + +    G           D  
Sbjct: 184 QGENRIMIQAPGESDPEKLRAIIGKTAKLTFQMVDETVTPEDMQAGRIPPGSEVLPGDQY 243

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y+V+ +  +SG  L  A   FDP++  PVV ++F+  G R+F E+T  NIGK  A+V
Sbjct: 244 APYYVVKKRAIVSGEELTNAQQQFDPQSGNPVVQLTFNASGGRKFGEMTGRNIGKRFAIV 303

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +VL+AP I  AI  G   I+GNFT+++A  L+ +LR+G+LP  LN+ ++R V A+LG
Sbjct: 304 LDDKVLSAPTIQSAITGGSGIITGNFTVQSANELSLLLRSGALPAPLNVEDQRTVTAELG 363

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +D++  G+ ++  G V + +F+I+ YG +G  A  ++ +NV+L + ++S+  ATLT P I
Sbjct: 364 ADAVKAGSISLAIGAVSMFVFVILAYGLFGGFAAIALVVNVLLIVGIMSMTQATLTFPGI 423

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG++L + +AVD+N+L+ ER+R+E    ++   + D G+  A ++I D+NIT+LI+ +++
Sbjct: 424 AGLILTLAVAVDANVLIYERMRDEANAGRTPMAAADHGYKLALTSILDANITSLISGLIM 483

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           F FG G V+GFA T+ + +  S+FTAI I + ++ +  +  K K + I
Sbjct: 484 FSFGSGPVKGFAWTLVIGVFTSLFTAIFITQVLIGWWFKTAKPKKLPI 531



 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 79/175 (45%), Gaps = 5/175 (2%)

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
            ++  + ++ G + + I A++M +++ + +  +    AI  L++++   +G  ++     
Sbjct: 360 AELGADAVKAGSISLAIGAVSMFVFVILAYGLFGGFAAI-ALVVNVLLIVGIMSMTQATL 418

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
               +A ++  +  +V+  V++Y+RMR          +     D      L   +  ++ 
Sbjct: 419 TFPGIAGLILTLAVAVDANVLIYERMRDEANA---GRTPMAAADHGYKLALTSILDANIT 475

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           + IS L M  +G   +  FA  +  G+  +  ++IFI   +L+  +   AK  ++
Sbjct: 476 SLISGLIMFSFGSGPVKGFAWTLVIGVFTSLFTAIFI-TQVLIGWWFKTAKPKKL 529


>gi|257063455|ref|YP_003143127.1| protein-export membrane protein SecF/protein-export membrane
           protein SecD [Slackia heliotrinireducens DSM 20476]
 gi|256791108|gb|ACV21778.1| protein-export membrane protein SecF/protein-export membrane
           protein SecD [Slackia heliotrinireducens DSM 20476]
          Length = 855

 Score =  261 bits (665), Expect = 5e-67,   Method: Composition-based stats.
 Identities = 157/858 (18%), Positives = 310/858 (36%), Gaps = 111/858 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R N WLV++ +++    + + +P               P+ RI+  LDL+GG  +VL   
Sbjct: 18  RRNIWLVVVTAVLVIASIAMFMP---------------PQERINQALDLQGGLSVVLSAE 62

Query: 61  --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTL 117
             D  +     ++     + S +   G     ++ Q  N+I +        E   + +  
Sbjct: 63  SNDGSEVTAEQMETSRSIIESRVNLLGASEAVVQLQGDNQILVQIPGLSDTEEALETIGK 122

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIV--LSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +   ++L+    ++++             ++    +  ++     S+E+     + I 
Sbjct: 123 TGKLEFARLDSFTDQDVVNAIQTGAYLSQETVTDEAGNVFVTGEGTPSLEVEPGTYEPIV 182

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             E+  +               D +   +     A+ S   V  +      + GV     
Sbjct: 183 TGENINRVTVGRESETSQFYAVDLNLDSEGTKAFAEASADLVEDHGQIVIILDGVVQSAP 242

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +  ++   +  V I+G +                                          
Sbjct: 243 AVQSEI-PDGNVAITGNYSLAEAQ------------------------------------ 265

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                        +         +  +F  +TA  +   L  G+L   + +     +   
Sbjct: 266 -------------SLVTVLESGSLPVSFEYQTAQTVGPTLGQGALRSGVIVALIGLLLVM 312

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           L     YKG   I A  + +   + +     G++A  S F    L+LA ++ +  T+ + 
Sbjct: 313 LYLLFFYKGLGFITAAAMAVFACLYL-----GILALLSHFNLFSLSLAGIAGVVLTIGMA 367

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
                        DS+IL  ER REE R  +SV  +   G      T  D+++  L++ +
Sbjct: 368 ------------ADSSILTLERFREEIRLGRSVRAASITGVRHGIMTSIDADLVTLVSAL 415

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            LFF    +V+GF +T+ L I   +   +     ++  +      K+     +       
Sbjct: 416 ALFFLAAASVKGFGLTLALGIFCDILMMLLFKAPLIRLLAPKAIAKNPGFWGVKDCEEAA 475

Query: 536 DCIA-------------------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                                     +  R   +  +++  +  + +L   G+N+GI+F 
Sbjct: 476 PYFTDEKEAPAGGKIPGRFIKHDFNILGWRKVTLTAAVVAVVLVLAILGIRGINFGIEFV 535

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           GG  +       V +  +R   +     D   Q  + +      ++     +       +
Sbjct: 536 GGTSVAFHNTGDVTIEQLRDAFDEAGETDAVIQTTETDGEPGFLVRTTTTSAEDANVAAK 595

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
            V                  +GP     +I+  ++  ++S I ++IYI IRF+ +   + 
Sbjct: 596 AVADTFGWETDSFE---VTTIGPDWGTSVIKSSVIAFLVSLILIIIYISIRFRDYKMGVT 652

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           AI  L+ D+    G +AL G E     +AAVLT++GYS+ D VVV+  +  NMK  +   
Sbjct: 653 AIVALLHDLILVFGIYALIGREVTPNTIAAVLTILGYSLYDTVVVFRSIDDNMKGDSIKC 712

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           +F  + + S+N+ L RS+ TS+ + I VL M ++G   +  FA+ M  G+V    SS+ I
Sbjct: 713 TFMSMANHSLNQVLIRSLNTSITSLIPVLFMLLFGAETLKDFALAMTIGLVSGCYSSLAI 772

Query: 816 AAPILLFIYDWRAKNARI 833
           A P+         + AR+
Sbjct: 773 ATPLYAIWKTREPEFARL 790


>gi|92117344|ref|YP_577073.1| preprotein translocase subunit SecD [Nitrobacter hamburgensis X14]
 gi|91800238|gb|ABE62613.1| protein-export membrane protein SecD [Nitrobacter hamburgensis X14]
          Length = 533

 Score =  259 bits (661), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 200/529 (37%), Positives = 312/529 (58%), Gaps = 9/529 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +   +      L A+PNF P++ +  +P    +  + LGLDL+GGS+L+LEVD + 
Sbjct: 6   RWKALAIIVTALAICLCAVPNFFPEAQVKTWPKWA-QRHLVLGLDLQGGSYLLLEVDSNY 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                L    D+ R  L+   I    +      + +  +     +    K+    Q +  
Sbjct: 65  VKKEKLDQVRDDARKALRDARIAYTGLAAKNGVVEVRISKEEEFQTALGKLRELSQPLGG 124

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            L    +++L + +     I + + Q  +   I  ++EQS++II +R++++G  E  IQR
Sbjct: 125 LLGSTGQRSLEVSSADGGLIRMTVPQAAVTDRIRQSVEQSIQIIEKRVNELGTVEPLIQR 184

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237
            G+ RIL+Q+PG QDP+RL+++LG TAKM F  V  + S +  + G              
Sbjct: 185 QGTDRILVQVPGLQDPTRLKEILGKTAKMDFRMVDSSVSPEQALQGRVPADSEVLMSSQA 244

Query: 238 -GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y+V+ +V +SG  L  A   FD +T +P+V   F+  GAR+F + T +N+G+P A+
Sbjct: 245 PKTPYVVKKQVLVSGGDLTDAQPGFDSRTSEPIVTFRFNSNGARKFAQATSENVGQPFAI 304

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           +LD  V++APVI + I  G  QISGNFT++ A  LA +LRAG+LP  L I+EER VG  L
Sbjct: 305 ILDNEVISAPVIREPITGGSGQISGNFTVQEANDLAILLRAGALPAPLTIIEERTVGPGL 364

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G DSI KG  A   G +++++FM++ Y  +G+ A+ ++ +NV +   +LSLL ATLTLP 
Sbjct: 365 GQDSIEKGELAAYVGSIMVIVFMLLTYRLFGVFANIAVAINVAMIFGVLSLLNATLTLPG 424

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA +TI DSNIT  IA  V
Sbjct: 425 IAGIVLTVGIAVDSNVLIYERIREEVRGGRTAISAIDAGFKRALATILDSNITTFIAAAV 484

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF+ G G VRGFA+T+G+ I+ ++FTA  + R ++   +R+K+ +++ I
Sbjct: 485 LFYIGTGPVRGFAVTLGIGIITTVFTAFEVTRLIVATWVRWKRPQNVPI 533



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I KG +   + +I +++++ + ++  F + A   + +++    G  +L    
Sbjct: 361 GPGLGQDSIEKGELAAYVGSIMVIVFMLLTYRL-FGVFANIAVAINVAMIFGVLSLLNAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++   T+IS    ID      L   + +++
Sbjct: 420 LTLPGIAGIVLTVGIAVDSNVLIYERIREEVRGGRTAIS---AIDAGFKRALATILDSNI 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FI+   +   G   +  FA+ +  GI+    ++  +   I+     W+    
Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFEVTRLIVATWVRWKRPQN 530


>gi|91977247|ref|YP_569906.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris
           BisB5]
 gi|91683703|gb|ABE40005.1| protein-export membrane protein SecD [Rhodopseudomonas palustris
           BisB5]
          Length = 533

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 199/529 (37%), Positives = 312/529 (58%), Gaps = 9/529 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +   +      L A+PNF P+S +  +P    +  + LGLDL+GGSH++LEVD + 
Sbjct: 6   RWKALAVILTALAVCLCAVPNFFPESTVKTWPKWA-QRHLVLGLDLQGGSHILLEVDANS 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                L+   D+ R  L++  I    + Q  + + +  +          K+    Q +  
Sbjct: 65  VKKDKLESVRDDARRVLREARIAYTGLAQKGDVVEVKISKDTEVPAALTKLRELSQPLGG 124

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            L  + +++L +       I + +    I   I  +++QS++I+ +R++++G  E  IQR
Sbjct: 125 LLGSNGQRSLEVSDAGGGVIRLAVPPAAIADRIRQSVDQSIQIVERRVNELGTVEPLIQR 184

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237
            G+ RIL+Q+PG QDP+RL++LLG TAK+ F  V  + S      G              
Sbjct: 185 QGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSADQAQQGRAPPDSDVLMSAQT 244

Query: 238 -GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y+++ ++ +SG  L  A   FD +T +P+V   F+  GAR+F   T +N+G+P A+
Sbjct: 245 PKQPYVIKKQILVSGGDLTDAQPGFDSRTSEPIVSFRFNTSGARKFSRATTENVGQPFAI 304

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLD  V++APVI + I  G  QISG+FT++ A  LA +LRAG+LP  L I+EER VG  L
Sbjct: 305 VLDNEVISAPVIREPITGGSGQISGSFTVQQANDLAILLRAGALPAPLTIIEERTVGPGL 364

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G DSI KG  A   G +L+++FM++ Y  +G+ A+ ++ +NV +   +LSLL ATLTLP 
Sbjct: 365 GQDSIEKGELAAYVGSILVIIFMLLTYRLFGVFANLAVAVNVAMIFGVLSLLNATLTLPG 424

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG+VL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA STI DSNIT  IA  V
Sbjct: 425 IAGVVLTVGIAVDSNVLIYERIREELRAGRNAISAIDAGFKRALSTILDSNITTFIAAAV 484

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++   +R+K+ +++ I
Sbjct: 485 LFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQTVPI 533



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 81/173 (46%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I KG +   + +I ++I++ + ++  F + A   + +++    G  +L    
Sbjct: 361 GPGLGQDSIEKGELAAYVGSILVIIFMLLTYRL-FGVFANLAVAVNVAMIFGVLSLLNAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A V+  +G +V+  V++Y+R+R+ ++    +IS    ID      L   + +++
Sbjct: 420 LTLPGIAGVVLTVGIAVDSNVLIYERIREELRAGRNAIS---AIDAGFKRALSTILDSNI 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FI+   +   G   +  FA+ +  GI+    ++  +   I+     W+   
Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQ 529


>gi|254469248|ref|ZP_05082653.1| protein-export membrane protein SecD [Pseudovibrio sp. JE062]
 gi|211961083|gb|EEA96278.1| protein-export membrane protein SecD [Pseudovibrio sp. JE062]
          Length = 534

 Score =  259 bits (660), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 205/529 (38%), Positives = 324/529 (61%), Gaps = 8/529 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W + L  ++   G+L  LPNF P S +  +P  MPK +I LGLDL+GG++L+ EVD++D
Sbjct: 6   RWKIALIIVVVLGGILTTLPNFFPASTVQSWPDFMPKRQIVLGLDLQGGAYLLYEVDKED 65

Query: 65  FVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           +     +     +R  L++   IG   +    + + +   D+   +    ++   +  +N
Sbjct: 66  YKEKQFRQLVGNIRRALRENPRIGYTGLGIQGDGVQVRIRDAARYDEAERRLAELVNPLN 125

Query: 124 SKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           S +       + +L    +    +  SQ  +D  ++  + QS+E+IR+R+D++G +E +I
Sbjct: 126 SGVFGGAAVNEFVLEPQGDGLFRMAFSQEGLDMRLASVVRQSIEVIRRRVDELGTTEPSI 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-----FMFGVRFLRDS 236
           QR G+ RIL++ PGE +P RL+ ++G TA+++FH V    S           G   +  +
Sbjct: 186 QRQGTDRILVEAPGESNPQRLKDIIGATAQLTFHLVSQEMSASQALQGRPPNGTMVVEGN 245

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           DG  YL+++   ++G  L  A+  FD +T++PVV+  F+  GAR F +VTR N+G+P A+
Sbjct: 246 DGQPYLLDETPLLTGEELQDASVAFDQQTNEPVVNFRFNTAGARVFADVTRANVGRPFAI 305

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLD  V+TAPVI Q I  G  QISGNFT++ A  LA +LRAG+LP +L++VEER+VG  L
Sbjct: 306 VLDDEVITAPVIRQPITGGSGQISGNFTVDGANDLAVLLRAGALPARLDVVEERSVGPGL 365

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G DSI  G  A +     +V+FM++ YG++G++A+ ++  NV L   +L+ L ATLTLP 
Sbjct: 366 GQDSIDSGKVASIVAAAAVVIFMLLAYGQFGVIANLALASNVFLIFGVLTTLQATLTLPG 425

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG+VL IG+AVD+N+L+ ERIREE R  +S   S+D GFSRA  TI D+NIT LI  V+
Sbjct: 426 IAGVVLTIGMAVDANVLIYERIREEARAGRSAIGSIDAGFSRALGTILDANITTLIVAVI 485

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LFF G G V+GFA+T+ + I  ++F+A ++ R ++   ++ K+   + I
Sbjct: 486 LFFIGSGPVKGFAVTLMIGIFTTVFSAFTVSRFLISVWVKRKRPSKLPI 534



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 81/178 (45%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++ I  G V  I++A A++I++ + +   F + A   L  ++    G      
Sbjct: 360 SVGPGLGQDSIDSGKVASIVAAAAVVIFMLLAYG-QFGVIANLALASNVFLIFGVLTTLQ 418

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A V+  IG +V+  V++Y+R+R+  +      S    ID   +  LG  +  
Sbjct: 419 ATLTLPGIAGVVLTIGMAVDANVLIYERIREEARA---GRSAIGSIDAGFSRALGTILDA 475

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I  + +   G   +  FA+ +  GI     S+ F  +  L+ ++  R + +++
Sbjct: 476 NITTLIVAVILFFIGSGPVKGFAVTLMIGIFTTVFSA-FTVSRFLISVWVKRKRPSKL 532


>gi|328543822|ref|YP_004303931.1| Protein translocase subunit secF / protein translocase subunit secD
           [polymorphum gilvum SL003B-26A1]
 gi|326413566|gb|ADZ70629.1| Protein translocase subunit secF / protein translocase subunit secD
           [Polymorphum gilvum SL003B-26A1]
          Length = 536

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 204/531 (38%), Positives = 322/531 (60%), Gaps = 10/531 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W + L  ++   G+   LPNF     L  +P  +PK ++ LGLDL+GG++L+ EVD+ D
Sbjct: 6   RWKIALIVLVILSGIASTLPNFFSAETLRSWPDWLPKRQMVLGLDLQGGAYLLYEVDKQD 65

Query: 65  FVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           ++   L     E+R  L+++  IG   +        +   D     +   ++      + 
Sbjct: 66  YIQKSLTTLVGEIRRKLREDPRIGYTGLGVQGETAQVRIRDLERLSDAERRLRELENPLV 125

Query: 124 SKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           S L       +  +  + +  I    +++ +DQ ++  ++Q++E+IR+R+D++G +E +I
Sbjct: 126 SSLFGGQPVNEFAMTVSADGLIRFAFTEDGLDQRMTSIVQQAIEVIRRRVDELGTTEPSI 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234
           QR GS RIL++ PGEQDP RL+ L+G TA+++FH V  + S +  + G            
Sbjct: 186 QRQGSDRILVEAPGEQDPERLKGLIGQTAQLTFHMVDMSMSGEEALQGRPPAGTMVLYSV 245

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           D     YL+E+   + G  L  A  +FD +T++PVV+  F+  GAR+F  +T+ N+G+P 
Sbjct: 246 DDPPIPYLLEESPLLGGEDLVDAQVSFDQRTNEPVVNFRFNTSGARKFSVITQQNVGRPF 305

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A+VLD  V++APVI + I  G  QISG+FT+E A  LA +LRAG+LP KL ++EER +G 
Sbjct: 306 AIVLDDEVISAPVIREPITGGSGQISGSFTVEGANDLAVLLRAGALPAKLTVLEERAIGP 365

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG+DS+  G  A + G   +++FM++ YG++GL+AD ++  N++L    L+ L ATLTL
Sbjct: 366 GLGADSVEAGKIASLIGTAAVIVFMVLAYGRFGLIADIALLSNIMLIFGALTFLQATLTL 425

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL IG+AVD+N+L+ ERIREE R  +S   ++D GFSRA STI D+NIT LIA 
Sbjct: 426 PGIAGIVLTIGMAVDANVLIFERIREEVRAGRSAISAIDAGFSRAISTILDANITTLIAA 485

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           ++LF  G G VRGFA+T+ + I  ++FTA +  R M+   +RY++   + I
Sbjct: 486 LILFQLGSGPVRGFAVTLAIGIFTTVFTAFTFTRLMVALWVRYRRPTRLPI 536



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 68/150 (45%), Gaps = 4/150 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + +  G +  +I   A+++++ + +   F L A   L+ +I    G      
Sbjct: 362 AIGPGLGADSVEAGKIASLIGTAAVIVFMVLAYG-RFGLIADIALLSNIMLIFGALTFLQ 420

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++++R+R+ ++      S    ID   +  +   +  
Sbjct: 421 ATLTLPGIAGIVLTIGMAVDANVLIFERIREEVRA---GRSAISAIDAGFSRAISTILDA 477

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           ++   I+ L +   G   +  FA+ +A GI
Sbjct: 478 NITTLIAALILFQLGSGPVRGFAVTLAIGI 507


>gi|118589130|ref|ZP_01546537.1| protein-export membrane protein SECD [Stappia aggregata IAM 12614]
 gi|118438459|gb|EAV45093.1| protein-export membrane protein SECD [Stappia aggregata IAM 12614]
          Length = 536

 Score =  258 bits (657), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 202/531 (38%), Positives = 330/531 (62%), Gaps = 10/531 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W + L  ++   G+L  LPNF  Q  L+ +P  +PKN++ LGLDL+GG++L+ E+D+ D
Sbjct: 6   RWKIGLIVLVVAAGILTTLPNFFSQKQLESWPDFLPKNQMVLGLDLQGGAYLLYEIDKQD 65

Query: 65  FVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           ++   ++    ++R+ L+++  IG   +    +   +   D     +  +++   +  + 
Sbjct: 66  YIQKRMRALVGDIRTTLREDPRIGYTGLGVQGDAAQVRIRDLTRLADAQERLQPLVNPLV 125

Query: 124 SKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           S +       +  +  T +  I    S+  ++  +++ ++QS+E+IR+R+D+IG +E +I
Sbjct: 126 SSVFGGQAVNEFDMTATEDGLIRFSYSEQGLEDRMTNIVQQSIEVIRRRVDEIGTTEPSI 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------R 234
           QR G+ RIL++ PGE DP RL+ L+G TA+++FH V  + S +  +              
Sbjct: 186 QRQGADRILVEAPGEDDPERLKDLVGQTAQLTFHMVDTSMSGEQALQNRPPAGTVIMMSV 245

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           D     YL+E+   +SG  L  A  +FD +T++PVV+  F++ GAR+F ++T+ N+ +P 
Sbjct: 246 DDPPIPYLLEEAPLLSGEDLVDAQVSFDQRTNEPVVNFRFNQSGARKFAQITQQNVNRPF 305

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A+VLD  V++APVI + I  G  QISGNFT++ A  LA +LRAG+LP KL ++EER++G 
Sbjct: 306 AIVLDEEVISAPVIREPITGGSGQISGNFTVDGANDLAVLLRAGALPAKLTVIEERSIGP 365

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG+DSI  G  A V G  L+++FMI+ YG++G++AD ++  N+ L    L+LL ATLTL
Sbjct: 366 GLGADSIEAGKLASVIGGGLVIIFMILAYGRFGIIADIALMANIFLIFGALTLLQATLTL 425

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL IG+AVD+N+L+ ERIREE R  +S   ++D GFSRA  TI D+NIT LIA 
Sbjct: 426 PGIAGIVLTIGMAVDANVLIFERIREEARAGRSAISAVDAGFSRALGTILDANITTLIAA 485

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           V+LF  G G V+GFA+T+ + I  ++F+A +  R ++   +R ++   + I
Sbjct: 486 VILFQLGSGPVKGFAVTLAIGIFTTVFSAFTFSRLLVALWLRRRRPSKLPI 536



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 82/178 (46%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G +  +I    ++I++ + +   F + A   L+ +I    G   L  
Sbjct: 362 SIGPGLGADSIEAGKLASVIGGGLVIIFMILAYG-RFGIIADIALMANIFLIFGALTLLQ 420

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++++R+R+  +      S    +D   +  LG  +  
Sbjct: 421 ATLTLPGIAGIVLTIGMAVDANVLIFERIREEARA---GRSAISAVDAGFSRALGTILDA 477

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I+ + +   G   +  FA+ +A GI     S+ F  + +L+ ++  R + +++
Sbjct: 478 NITTLIAAVILFQLGSGPVKGFAVTLAIGIFTTVFSA-FTFSRLLVALWLRRRRPSKL 534


>gi|85716184|ref|ZP_01047159.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A]
 gi|85697017|gb|EAQ34900.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A]
          Length = 533

 Score =  257 bits (656), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 200/529 (37%), Positives = 309/529 (58%), Gaps = 9/529 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +   +      L A+PNF P++ +  +P    +  + LGLDL+GGS+L+LEVD + 
Sbjct: 6   RWKALAIIVTALAICLCAVPNFFPEAQVKTWPKWA-QRHLVLGLDLQGGSYLLLEVDSNY 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                L    D+ R  L+   I    +      + +  +     +    K+    Q +  
Sbjct: 65  VKKEKLDQVRDDARKTLRDARIAYTGLAIKNGAVEVRISKEEEFQTALGKLRELSQPLGG 124

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            L    +++L + +     + + + Q  +   I  ++EQS++II +R++++G  E  IQR
Sbjct: 125 LLGSSGQRSLEVSSADGGLVRMAVPQTAVTDRIRQSVEQSIQIIERRVNELGTVEPLIQR 184

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237
            G+ RIL+Q+PG QDP+RL+++LG TAKM F  V  + S      G              
Sbjct: 185 QGADRILVQVPGLQDPTRLKEILGKTAKMDFRMVDSSVSPDQAAQGQVPADSEVLMSSQA 244

Query: 238 -GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y+V  +V +SG  L  A   FD +T +P+V   F+  GAR+F + T +N+G+P A+
Sbjct: 245 PKTPYVVRKQVLVSGGDLTDAQPGFDSRTSEPIVTFRFNSNGARKFAQATTENVGQPFAI 304

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           +LD  V++APVI + I  G  QISGNFT++ A  LA +LRAG+LP  L I+EER VG  L
Sbjct: 305 ILDNEVISAPVIREPITGGSGQISGNFTVQEANDLAILLRAGALPAPLTIIEERTVGPGL 364

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G DSI KG  A   G ++++LFM++ Y  +G+ A+ ++ +NV +   +LSLL ATLTLP 
Sbjct: 365 GQDSIEKGELAAYVGSIMVILFMLLTYRLFGVFANIAVAINVAMIFGVLSLLNATLTLPG 424

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA +TI DSNIT  IA  V
Sbjct: 425 IAGIVLTVGIAVDSNVLIYERIREEIRAGRTAISAIDAGFKRALATILDSNITTFIAAAV 484

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF+ G G VRGFA+T+G+ I+ ++FTA  + R ++   +R+K+ +++ I
Sbjct: 485 LFYIGTGPVRGFAVTLGIGIMTTVFTAFEVTRLIVATWVRWKRPQTVPI 533



 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 82/173 (47%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I KG +   + +I +++++ + ++  F + A   + +++    G  +L    
Sbjct: 361 GPGLGQDSIEKGELAAYVGSIMVILFMLLTYRL-FGVFANIAVAINVAMIFGVLSLLNAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++   T+IS    ID      L   + +++
Sbjct: 420 LTLPGIAGIVLTVGIAVDSNVLIYERIREEIRAGRTAIS---AIDAGFKRALATILDSNI 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FI+   +   G   +  FA+ +  GI+    ++  +   I+     W+   
Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGIMTTVFTAFEVTRLIVATWVRWKRPQ 529


>gi|86749849|ref|YP_486345.1| preprotein translocase subunit SecD [Rhodopseudomonas palustris
           HaA2]
 gi|86572877|gb|ABD07434.1| protein-export membrane protein SecD [Rhodopseudomonas palustris
           HaA2]
          Length = 533

 Score =  257 bits (655), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 199/529 (37%), Positives = 313/529 (59%), Gaps = 9/529 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +   +      L A+PNF P   +  +P    +  + LGLDL+GGSH++LEVD + 
Sbjct: 6   RWKALAVIVTALAVCLCAVPNFFPDHTVKTWPKWA-QRHLVLGLDLQGGSHILLEVDANS 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                L    D+ R  L++  I    +    +++ +  +          K+    Q +  
Sbjct: 65  VRKDKLDSVRDDARRVLREARIAYTGLATKGDQVEVRISKENEVPTALTKLRELSQPLGG 124

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            L  + +++L +       I + + Q  I + +  +++QS++I+ +R++++G  E  IQR
Sbjct: 125 LLGSNGQRSLDVTDAGGGLIRLTVPQAAIAERVRQSVDQSIQIVERRVNELGTVEPLIQR 184

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------RDS 236
            G+ RIL+Q+PG QDP+RL++LLG TAK+ F  V  + S +    G             S
Sbjct: 185 QGADRILVQVPGLQDPTRLKELLGKTAKLDFRMVDSSVSPEQAQAGRAPSDSDVLMSSSS 244

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y+++ +V +SG  L  A   FD +T +P+V   F+  GAR+F   T +N+G+P A+
Sbjct: 245 PKQPYVIKKQVLVSGADLTDAQPGFDQRTSEPIVSFRFNTNGARKFARATTENVGQPFAI 304

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLD  V++APVI + I  G  QISG+FT++ A  LA +LRAG+LP  L I+EER VG  L
Sbjct: 305 VLDNEVISAPVIREPITGGSGQISGSFTVQGANDLAILLRAGALPAPLTIIEERTVGPGL 364

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G DSI KG  A   G +L+++FM++ Y  +G+ A+ ++ +NV +   +LSLL ATLTLP 
Sbjct: 365 GQDSIEKGELAAYVGSILVIIFMLLTYRLFGVFANIAVAVNVAMIFGVLSLLNATLTLPG 424

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG+VL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA STI DSNIT  IA  V
Sbjct: 425 IAGVVLTVGIAVDSNVLIYERIREELRAGRNAISAIDAGFKRALSTILDSNITTFIAAAV 484

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++   +R+K+ +++ I
Sbjct: 485 LFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQTVPI 533



 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 81/173 (46%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I KG +   + +I ++I++ + ++  F + A   + +++    G  +L    
Sbjct: 361 GPGLGQDSIEKGELAAYVGSILVIIFMLLTYRL-FGVFANIAVAVNVAMIFGVLSLLNAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A V+  +G +V+  V++Y+R+R+ ++    +IS    ID      L   + +++
Sbjct: 420 LTLPGIAGVVLTVGIAVDSNVLIYERIREELRAGRNAIS---AIDAGFKRALSTILDSNI 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FI+   +   G   +  FA+ +  GI+    ++  +   I+     W+   
Sbjct: 477 TTFIAAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQ 529


>gi|27379846|ref|NP_771375.1| preprotein translocase subunit SecD [Bradyrhizobium japonicum USDA
           110]
 gi|27352999|dbj|BAC50000.1| protein-export membrane protein [Bradyrhizobium japonicum USDA 110]
          Length = 534

 Score =  256 bits (652), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 207/530 (39%), Positives = 317/530 (59%), Gaps = 10/530 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +   +   I  L A+PNF P++ +  +P+   + R+ LGLDL+GGS+L+LEVD + 
Sbjct: 6   RWRALGIILTALIVCLCAVPNFFPEAQVKTWPAWA-QRRLVLGLDLQGGSYLLLEVDSNY 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                L    D++R  L+   IG    +    +   +        +    K+    Q + 
Sbjct: 65  VKKERLDQVRDDVRRTLRDAKIGFTGGVTVRNDAAEVRITKETDVQPALAKLRELAQPLG 124

Query: 124 SKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +    +++L +       I + + Q  +   +   IEQS++I+ +R++++G  E  IQ
Sbjct: 125 GLMGSSGQRDLEVTDAGGGVIRLSIPQAAMLDRMRKTIEQSIQIVERRVNELGTVEPVIQ 184

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------ 236
           R G+ RIL+Q+PG QDP+RL++LLG TAKM F  V  +        G             
Sbjct: 185 RQGNDRILVQVPGLQDPTRLKELLGKTAKMEFRMVDTSVPPDQAQQGRLPPESDLLMSAS 244

Query: 237 -DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                Y+V+ +V ++G  L  A A+FD +T +PVV   F+  GAR+F + T++N+G P A
Sbjct: 245 PPPTPYVVKKQVLVAGGDLTDAQASFDQRTGEPVVSFKFNTSGARKFSQATQENVGLPFA 304

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD +V++APVI + I  G+ QISGNFT+++A  LA +LRAG+LP  L +VEER VG  
Sbjct: 305 IVLDNKVISAPVIREPITGGQGQISGNFTVQSANDLAILLRAGALPAPLTVVEERTVGPG 364

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI KG  A   G +L+++FM+V Y  +G+ A+ ++ +NV +   LLSLL ATLTLP
Sbjct: 365 LGQDSIEKGELAAYVGSILVIIFMLVTYRLFGVFANIAVAINVAMIFGLLSLLNATLTLP 424

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GF RA +TI DSNIT  IA  
Sbjct: 425 GIAGIVLTVGIAVDSNVLIYERIREELRGGRNAISAIDAGFKRALATILDSNITTFIAAA 484

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           VLF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++   +R+K+ +S+ I
Sbjct: 485 VLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVAGWVRWKRPQSVPI 534



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I KG +   + +I ++I++ + ++  F + A   + +++    G  +L    
Sbjct: 362 GPGLGQDSIEKGELAAYVGSILVIIFMLVTYRL-FGVFANIAVAINVAMIFGLLSLLNAT 420

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++    +IS    ID      L   + +++
Sbjct: 421 LTLPGIAGIVLTVGIAVDSNVLIYERIREELRGGRNAIS---AIDAGFKRALATILDSNI 477

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FI+   +   G   +  FA+ +  GI+    ++  +   I+     W+   +
Sbjct: 478 TTFIAAAVLFYIGTGPVRGFAVTLGIGIITTVFTAFTLTRLIVAGWVRWKRPQS 531


>gi|299134929|ref|ZP_07028120.1| protein-export membrane protein SecD [Afipia sp. 1NLS2]
 gi|298589906|gb|EFI50110.1| protein-export membrane protein SecD [Afipia sp. 1NLS2]
          Length = 532

 Score =  255 bits (650), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 207/529 (39%), Positives = 311/529 (58%), Gaps = 10/529 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +       I  L A+PNF P++ +  +P+   + R+ LGLDL+GGSHL+LEVD + 
Sbjct: 6   RWKALAVIFTALIVCLCAVPNFFPEATVKTWPAWA-QRRLVLGLDLQGGSHLLLEVDANS 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                L    D+ R  L++  IG   +    + + +             K+    Q +  
Sbjct: 65  VKKDKLDQVRDDARRTLREAKIGYTGLSIKGDNVEVRVK-EADLATALTKLRELSQPIGG 123

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            L    ++ L +       I + + Q  I   +  A++QS++II +R++++G  E  IQR
Sbjct: 124 VLGGTGQRTLEVSDAGGGLIRLTVPQAAILDRVRQAVDQSIQIIEKRVNELGTVEPLIQR 183

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG----- 238
            G  R+L+Q+PG QDP+RL+++LG TAKM F  V    S +  + G              
Sbjct: 184 QGVDRVLVQVPGLQDPTRLKEILGKTAKMDFRMVDTTVSPEQALQGRVPPDSEVLKGAEP 243

Query: 239 --NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y+V+ +V +SG  L  A  +FD +T +PVV   F+  GAR+F + T +N+ +P A+
Sbjct: 244 PHAPYVVKKQVLVSGADLTDAQPSFDQRTGQPVVSFRFNGTGARKFAQATTENVKQPFAI 303

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLD  V++APVI + I  G  QISGNFT++ A  LA +LRAG+LP  L I+EER VG  L
Sbjct: 304 VLDNEVISAPVIQEPITGGSGQISGNFTVQQANDLAILLRAGALPAPLTIIEERTVGPGL 363

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G DSI  G  A   G VL+++FM + Y  +GL A+ ++ +NV +   +LSLL ATLTLP 
Sbjct: 364 GQDSIAAGELASYVGSVLVIVFMTLTYRLFGLFANIAVAVNVAMIFGILSLLNATLTLPG 423

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL +G+AVDSN+L+ ERIREE R  ++   ++D GFSRA +TI DSNIT  IA  V
Sbjct: 424 IAGIVLTVGIAVDSNVLIYERIREEVRHGRNAISAIDAGFSRALATILDSNITTFIAAAV 483

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++   +R+K+ +++ I
Sbjct: 484 LFYIGTGPVRGFAVTLGIGIVTTVFTAFTVTRLIVATWVRWKRPQTVPI 532



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 79/173 (45%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I  G +   + ++ +++++ + ++  F L A   + +++    G  +L    
Sbjct: 360 GPGLGQDSIAAGELASYVGSVLVIVFMTLTYRL-FGLFANIAVAVNVAMIFGILSLLNAT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++      +    ID   +  L   + +++
Sbjct: 419 LTLPGIAGIVLTVGIAVDSNVLIYERIREEVR---HGRNAISAIDAGFSRALATILDSNI 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FI+   +   G   +  FA+ +  GIV    ++  +   I+     W+   
Sbjct: 476 TTFIAAAVLFYIGTGPVRGFAVTLGIGIVTTVFTAFTVTRLIVATWVRWKRPQ 528


>gi|297207643|ref|ZP_06924078.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|296887660|gb|EFH26558.1| protein-export membrane protein SecDF [Staphylococcus aureus subsp.
           aureus ATCC 51811]
          Length = 545

 Score =  255 bits (649), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 151/518 (29%), Positives = 264/518 (50%), Gaps = 22/518 (4%)

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +A +L AGSLP+ L  +   +VGA  G D++ K   A   G+ LI LFM+  Y   GLV
Sbjct: 14  QIAELLNAGSLPVDLKEIYSNSVGAQFGQDALDKTVFASFIGVALIYLFMLGFYRLPGLV 73

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  ++   + LTL   + +   LTLP +A +VLG+G+AVD+NI++ ERI++E R  +++ 
Sbjct: 74  AIIALTTYIYLTLVAFNFISGVLTLPGLAALVLGVGMAVDANIIMYERIKDELRIGRTIK 133

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       ++ TIFDSN+T +IA  VLFFFG  +V+GFA  + L IL+   TA+ + R 
Sbjct: 134 QAFSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSVKGFATMLLLGILMIFVTAVFLSRF 193

Query: 510 M-------------MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +                    K  +      +    L        F++     +G+SIL 
Sbjct: 194 LLSLLVSSNIFKNQFWLFGVKKNKRHDINEGVDVHDLKTSFEKWNFVKLAKPLIGVSILI 253

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  + +L+   LN GIDF  G ++   + + +    V   ++   +     Q    +  
Sbjct: 254 VVVGLVILYIFKLNLGIDFSSGTRVDFQSKQAITQQKVEQVVKDSGLKADQIQINGKDNK 313

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                           ++ + +K K  +            V P I +EL +  ++ +I +
Sbjct: 314 VATVQFKDDLTRAQDNKLSDNIKSKFGDT------PQINTVSPIIGQELAKNAMLALIYA 367

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           +I ++IY+ +RF+W   L ++  L+ D+   +  F+LF IE +LT +AAVLT++GYS+ND
Sbjct: 368 SIGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAIFSLFRIEVDLTFIAAVLTIVGYSIND 427

Query: 737 KVVVYDRMRKNMKL---YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V +DR+R+N++     TT+    D++++SI +T+ RS+ T +   + V+ +  +G   
Sbjct: 428 TIVTFDRVRENLQKVKVITTTEQIDDIVNRSIRQTMTRSINTVLTVIVVVVAILFFGAPT 487

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           I +F + +  G++    SSIFIA P+   +   + K +
Sbjct: 488 IFNFTLALFIGLISGVFSSIFIAVPLWGIMKKRQLKKS 525


>gi|209885375|ref|YP_002289232.1| protein-export membrane protein SecD [Oligotropha carboxidovorans
           OM5]
 gi|209873571|gb|ACI93367.1| protein-export membrane protein SecD [Oligotropha carboxidovorans
           OM5]
          Length = 532

 Score =  253 bits (645), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 201/529 (37%), Positives = 312/529 (58%), Gaps = 10/529 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +   +   +  L A+PNF  ++ +  +P+   + R+ LGLDL+GGSHL+LEVD   
Sbjct: 6   RWRALAVILTALVVCLCAVPNFFSEATVKTWPNWA-QRRLVLGLDLQGGSHLLLEVDAKS 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                L+   D++R  L++  +G   +    + + +             K+    Q +  
Sbjct: 65  VKKDKLEQVRDDVRRALREAKLGYTGLGIKGDNVEVRVK-EADLPTALSKLRELSQPIGG 123

Query: 125 KLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            L    ++ + +       I + + Q  I   +  A++QS++II +R++++G  E  IQR
Sbjct: 124 ILGSSGQRTVDVTDLGGGLIRLAVPQAAILDRVRQAVDQSIQIIEKRVNELGTVEPLIQR 183

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------- 236
            G  R+L+Q+PG QDP+RL+++LG TAKM F  V  + S +    G              
Sbjct: 184 QGMDRVLVQVPGLQDPTRLKEILGKTAKMDFRMVDTSISPEQAQQGRVPPDSELLKGSEP 243

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y+++ +V +SG  L  A  +FD +T +PVV   F+  GAR+F + T +N+ +P A+
Sbjct: 244 PHVPYVIKKQVLVSGADLTDAQPSFDQRTGQPVVSFRFNGTGARKFAQATTENVKQPFAI 303

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLD  V++APVI + I  G  QISGNFT++ A  LA +LRAG+LP  L I+EER VG  L
Sbjct: 304 VLDNEVISAPVIQEPITGGSGQISGNFTVQQANDLAILLRAGALPAPLTIIEERTVGPGL 363

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G DSI  G  A   G VL+++FM + Y  +GL A+ ++ +NV +   +LSLL ATLTLP 
Sbjct: 364 GQDSIAAGELASYVGSVLVIVFMTLTYRLFGLFANIAVAINVAMIFGVLSLLNATLTLPG 423

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL +G+AVDSN+LV ERIREE R  ++   ++D GF+RA +TI D+NIT  IA  V
Sbjct: 424 IAGIVLTVGIAVDSNVLVYERIREELRHGRNAISAIDAGFARALATILDANITTFIAAAV 483

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF+ G G VRGFA+T+G+ I+ ++FTA ++ R ++   +R+K+ +++ I
Sbjct: 484 LFYIGSGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQTVPI 532



 Score =  134 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 77/173 (44%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I  G +   + ++ +++++ + ++  F L A   + +++    G  +L    
Sbjct: 360 GPGLGQDSIAAGELASYVGSVLVIVFMTLTYRL-FGLFANIAVAINVAMIFGVLSLLNAT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V+VY+R+R+ ++      +    ID      L   +  ++
Sbjct: 419 LTLPGIAGIVLTVGIAVDSNVLVYERIREELR---HGRNAISAIDAGFARALATILDANI 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FI+   +   G   +  FA+ +  GI+    ++  +   I+     W+   
Sbjct: 476 TTFIAAAVLFYIGSGPVRGFAVTLGIGIITTVFTAFTVTRLIVATWVRWKRPQ 528


>gi|254418242|ref|ZP_05031966.1| protein-export membrane protein SecD [Brevundimonas sp. BAL3]
 gi|196184419|gb|EDX79395.1| protein-export membrane protein SecD [Brevundimonas sp. BAL3]
          Length = 530

 Score =  253 bits (644), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 188/528 (35%), Positives = 304/528 (57%), Gaps = 10/528 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W VIL      +G L+A PN L  +  +  P  +PKN ++LGLDL+GGS+L+LEVD  
Sbjct: 5   SRWKVILVVASAILGCLLAFPNLLSSAQREALPGWLPKNALNLGLDLQGGSYLLLEVDVP 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 +    +++R  L  EGI     ++    + ++ A+   +    + +    Q   
Sbjct: 65  AMREKRVTNLIEDVRVTLNGEGIATNGFQREAGGVIVTLANPGQQTAAFEALR---QLAG 121

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +       +          I    +   +  + + A++QS+E++R+RID +G  E +I R
Sbjct: 122 AAGPSGQVERTATRVGGDRIRFAYTDTALAGMGATAVDQSIEVVRRRIDSLGTREPSITR 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDG 238
            G+ RI++Q PGE DP +L +++G TA+++F  V   NS    M G          D  G
Sbjct: 182 QGADRIVVQAPGESDPRKLEEVIGQTAQLTFQMVDSENSVTDAMAGRVPPDAELLVDEQG 241

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             YLV+ +V +SG +L         ++ +P +D  FD  GARRF E T  N+GKP A++L
Sbjct: 242 TPYLVKKRVLVSGENLTR-AGVGADQSGRPAIDFRFDAAGARRFGEATAANLGKPFAIIL 300

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG+V++AP I  AI +G  QI+G+F+I+ A  L  +L  G+LP  LN+ E R V A+LG+
Sbjct: 301 DGKVISAPTIQSAITTGSGQITGSFSIQEAATLVNLLNGGALPAPLNVEERRTVTAELGA 360

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           D++  G  +   G  +IV+FMI+ YG  +G V+   + LN +L +A +SL  ATLTLP I
Sbjct: 361 DAVAAGALSTAVGFAIIVVFMILAYGFLFGGVSVIGLVLNGVLIVAAMSLTQATLTLPGI 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG++L   +AVD+N+L+ ER+R+E R  +SV  S+D GFS+A+ TI D+N+T L+A  ++
Sbjct: 421 AGLILTFAVAVDANVLIYERMRDEARSGRSVIASMDAGFSKAWGTILDANVTTLVAAAIM 480

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           F FG G VRGFA T+ + +  S+F+++ + + ++ + ++  K K + I
Sbjct: 481 FVFGAGPVRGFAWTLSIGVFTSVFSSVLVAQVLLAYWLKTAKPKKLPI 528



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 74/173 (42%), Gaps = 3/173 (1%)

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
            ++  + +  G +   +    +++++ + + + F   ++  L+L+    +   +L     
Sbjct: 356 AELGADAVAAGALSTAVGFAIIVVFMILAYGFLFGGVSVIGLVLNGVLIVAAMSLTQATL 415

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            L  +A ++     +V+  V++Y+RMR   +   +  S    +D   ++  G  +  ++ 
Sbjct: 416 TLPGIAGLILTFAVAVDANVLIYERMRDEAR---SGRSVIASMDAGFSKAWGTILDANVT 472

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             ++   M V+G   +  FA  ++ G+  +  SS+ +A  +L +         
Sbjct: 473 TLVAAAIMFVFGAGPVRGFAWTLSIGVFTSVFSSVLVAQVLLAYWLKTAKPKK 525


>gi|76789183|ref|YP_328269.1| hypothetical protein CTA_0489 [Chlamydia trachomatis A/HAR-13]
 gi|76167713|gb|AAX50721.1| SecF [Chlamydia trachomatis A/HAR-13]
          Length = 564

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 146/560 (26%), Positives = 278/560 (49%), Gaps = 35/560 (6%)

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            + +  +        A +SGNF+      LAA L++G++     I+ E  V  +LGS   
Sbjct: 8   YVISDPVLNVPLKDHASVSGNFSYREVHRLAADLKSGAMSFIPEILSEEVVSPELGSSQR 67

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G  ++V GLV++++ M V Y   G++A  ++ LN++L  A +  L A LTL  +AGI+
Sbjct: 68  VQGILSVVLGLVVLIVLMSVYYRFGGVIASIAVLLNLLLIWASMQYLDAPLTLSGLAGII 127

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+LV ERIREE    +S+  S++ G+ +A+S IFDSN+T ++A+ +L    
Sbjct: 128 LAMGMAVDANVLVFERIREEYLLTRSLSESVEAGYKKAFSAIFDSNLTTILASALLLMLD 187

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
            G ++GFA+T+ + I  SMFTA+ + +   +  ++    K+ +         I       
Sbjct: 188 TGPIKGFALTLIIGIFSSMFTALFMTKFFFVIWVQ----KTRETQLHMMNKFIGIKHNFL 243

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-----VDLSVVRS 596
               R W V   +L   C           +G+DFKGG  L + ++          SV+R 
Sbjct: 244 KECKRLWVVSGVVLVLGCVGLGFGAWDSVFGMDFKGGYALTLDSHVCEYNPEQMCSVLRK 303

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--------- 647
             + + +    ++    + +  V++           ++     ++               
Sbjct: 304 RFQQIGLSSRDYRVRRADSSEKVKIYLSQNALDRVEQIEGAGSEQKGSDYHLARVLQVLS 363

Query: 648 -----------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
                       ++  +   V  ++S ++  + ++ +  +   +L+Y+ +RF+W +A  A
Sbjct: 364 DSGSSTTSMVFDASRGSWFKVSGQLSNKMRTQAVIALFGALGIILLYVSLRFEWRYAFSA 423

Query: 697 ITTLILDITKTLGF-----FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
           I  L+ D+  T        F L  I+ +L A+ A++T++GYS+N+ ++++DR+R++ +  
Sbjct: 424 ICALMHDLLATCAVLVALHFFLQRIQIDLQAIGALMTVLGYSLNNTLIIFDRIREDRREK 483

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
             +     LI+ ++ +TLGR+V T+      ++ +   GG  I +FA  M  GI++   S
Sbjct: 484 LFT-PMPILINDALQKTLGRTVMTTATTLSVLVILLFVGGGSIFNFAFIMTVGILLGTLS 542

Query: 812 SIFIAAPILLFIYDWRAKNA 831
           S++IA P+LLF+     +N+
Sbjct: 543 SLYIAPPLLLFMVRKEEQNS 562


>gi|323137257|ref|ZP_08072336.1| protein-export membrane protein SecD [Methylocystis sp. ATCC 49242]
 gi|322397615|gb|EFY00138.1| protein-export membrane protein SecD [Methylocystis sp. ATCC 49242]
          Length = 530

 Score =  251 bits (640), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 202/531 (38%), Positives = 314/531 (59%), Gaps = 8/531 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF----PSAMPKNRISLGLDLRGGSHL 56
           +R + W  I    +    +L+  P+ L  S  +      PS +   +I LGLDL+GGSH+
Sbjct: 2   LRFSTWKFIAIVAMTLAAVLVVAPSMLSPSNYEALKSRLPSWLEPPKIVLGLDLQGGSHV 61

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKV 115
           +LEVD  D ++  ++   D++R  L++E + +   +      + +  AD+  +E +  K 
Sbjct: 62  MLEVDRPDVMSTLVRNLRDDVRRILREEKVAITGGIGATARGVQVRIADAADREKVLPKF 121

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                  +S+L   P    +  + +  I I ++   +   +  A++QS+E+IR+R+D +G
Sbjct: 122 RQLRNSFSSRLVGGPSPLDVEESADGLIRITVTDVGVTDKLRRAVDQSIEVIRRRVDALG 181

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             E++IQR G  RIL+Q+PG QDP +L+ +LG TAK+ F  V            +   + 
Sbjct: 182 TREASIQRQGDDRILVQVPGLQDPEQLKTILGQTAKLEFRLVAEPGQNPAETEELE--QT 239

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTH-KPVVDISFDEMGARRFFEVTRDNIGKPL 294
               +  +E +V + G  L  A   FD +   +PVV+  F+  GA++F EVT  N+G+  
Sbjct: 240 DQEGKIAIEKQVMVQGEDLTDAQPGFDQQRSGEPVVNFRFNIRGAQKFGEVTSKNVGRLF 299

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A+VLD +V++AP I   I  G  QISG+FT+E A  L+ +LRAG+LP KLNIVEER VG 
Sbjct: 300 AIVLDNKVISAPRILTPITGGSGQISGHFTVEQANNLSILLRAGALPAKLNIVEERTVGP 359

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG DSI  G  A   G  L+V++M++ YG +G+ A+ ++F+++    A L LLG+TLTL
Sbjct: 360 GLGQDSIDAGKRAAYVGAGLVVVYMLITYGVFGVFANLALFVHIAFIFAGLVLLGSTLTL 419

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL IG+AVDSN+L+ ERIREEN   +S+  SLD GF+RA++TI DSN+T  +A 
Sbjct: 420 PGIAGIVLTIGMAVDSNVLIYERIREENHAGRSILASLDAGFNRAFATIVDSNVTMFVAA 479

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            +L+F G G VRGFA+++ L IL ++ TA+++ R M+     Y +   + I
Sbjct: 480 AILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMIAVWYHYARPTKLPI 530



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 73/174 (41%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I  G     + A  +++Y+ I +   F + A   L + I        L G  
Sbjct: 358 GPGLGQDSIDAGKRAAYVGAGLVVVYMLITYGV-FGVFANLALFVHIAFIFAGLVLLGST 416

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+R+R+         S    +D   N      V +++
Sbjct: 417 LTLPGIAGIVLTIGMAVDSNVLIYERIREENHA---GRSILASLDAGFNRAFATIVDSNV 473

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F++   +   G   +  FA+ +A GI+    +++ +   ++   Y +     
Sbjct: 474 TMFVAAAILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMIAVWYHYARPTK 527


>gi|312113469|ref|YP_004011065.1| protein-export membrane protein SecF [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218598|gb|ADP69966.1| protein-export membrane protein SecF [Rhodomicrobium vannielii ATCC
           17100]
          Length = 376

 Score =  249 bits (635), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 173/299 (57%), Gaps = 4/299 (1%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
              F +P      F++       +SI+  + ++ LLF  GLN+GIDFKGG  + V     
Sbjct: 4   KPLFRLPQKTNFHFVKYFKVCFALSIIGIVGTVVLLFIQGLNFGIDFKGGTLMQVQTPTA 63

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            + + +R+ L  + +G+I  QNF  +   L+R   Q G   AQ    + V   + +    
Sbjct: 64  AEAAKLRTTLTEIGVGEIQIQNFGKDDELLIRFPEQEGGPEAQKVAADKVLAALPQGTKE 123

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                 E VG  +S+ELI   I  ++++ + +  Y+W RF+W FALGAI  L+ D+  T+
Sbjct: 124 ---LRREQVGSTVSKELINSAIWALVLANLGIFAYVWFRFEWQFALGAIIALVHDVMITI 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G ++LFG++F+LT VAA+LT++GYS+ND VV+YDR+R+N++ Y   +    L+D S+NET
Sbjct: 181 GLWSLFGLDFDLTIVAALLTILGYSINDTVVIYDRIRENLRRY-KKMPLPQLLDLSVNET 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + R++ T     ++++P+ ++GG VI  F   M FG ++   SS++IAAP L+ I   R
Sbjct: 240 MSRTIMTVATVLMALIPLYIFGGEVIRGFTFAMIFGTLIGTYSSVYIAAPFLILIGVKR 298



 Score = 37.7 bits (85), Expect = 8.8,   Method: Composition-based stats.
 Identities = 14/105 (13%), Positives = 42/105 (40%), Gaps = 10/105 (9%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKIT 99
             ++ G+D +GG+  +++V             + +LR+ L + G+G   ++     +++ 
Sbjct: 42  QGLNFGIDFKGGT--LMQVQTPTAAE------AAKLRTTLTEIGVGEIQIQNFGKDDELL 93

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
           + F +              +     +   + ++  + +T  KE+ 
Sbjct: 94  IRFPEQEGGPEAQKVAADKVLAALPQGTKELRREQVGSTVSKELI 138


>gi|256375215|ref|YP_003098875.1| bifunctional preprotein translocase subunit SecD/SecF
           [Actinosynnema mirum DSM 43827]
 gi|255919518|gb|ACU35029.1| protein-export membrane protein SecD [Actinosynnema mirum DSM
           43827]
          Length = 753

 Score =  249 bits (634), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 191/690 (27%), Positives = 329/690 (47%), Gaps = 13/690 (1%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +     D   S A +++ME++R+R+D++G++E  + R G  RI+++LPG QDP+   ++
Sbjct: 44  QIVLETPDGSASEATDRAMEVLRRRVDELGVAEPVLARSGDRRIVVELPGVQDPAEAVEV 103

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--GNQYLVEDKVEISGIHLNGATANFDP 263
           LG TA++S H V               L D+   G+           G         F  
Sbjct: 104 LGRTAQLSVHPVTGAGGTPSPAGIGIALGDTVMTGDGIKNAQASPAQGGIGWTVGIEFQG 163

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
                   +S +   A       +        V+   +V  +      +  G  QI+G+F
Sbjct: 164 DAPAAWQRVSAEAACAPPGDPRRQIAFRLDDEVISSPQVDPSVGCGTGMIGGSTQITGSF 223

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T + A  LA ++R+G+LP+ +++VE+R VG  LG+++I     A + G+ L  LF+I +Y
Sbjct: 224 TQDEAEDLALVIRSGALPVPVDVVEQRTVGPTLGAEAIDASARAAIIGVALTGLFLIGVY 283

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
              GLVA  ++     ++ A L  +GATLTLP +AG VL +G+AVD+N+LV ER REE  
Sbjct: 284 RLAGLVAVLALVAYAAVSYAALLAIGATLTLPGLAGFVLAVGMAVDANVLVFERAREEFA 343

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
           + + +  S+D+GF  A+S + DSN T L+A  +LF+   G V+GF +T+ + ++ S+F+A
Sbjct: 344 RRRRMPRSVDLGFRGAFSAVADSNATTLLAAGLLFWLAVGPVKGFGVTLSIGVVASLFSA 403

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA--IQFMRARFWGVGISILFSICSI 561
           + + R ++  I+   + +           +        I   R     +  + L ++ ++
Sbjct: 404 LVLSRVLLQLIMPVLERRPRWSGLHDLGRVRTWLTGRGIVLFRRPTRWLVAAALIAVAAL 463

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             L   GL+ G++F GG  L   A   VD   VR  L      D                
Sbjct: 464 SGLAVRGLDLGVEFTGGRMLEFTAAS-VDTGRVRDALADAGFPDAVVATSGDSG------ 516

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                           V + +      +     E++GP +  EL R  ++ + I+  A L
Sbjct: 517 -VSVRTGPIDEAASARVGEAVDRATGGAEQVANELIGPSLGDELRRNALIALAIAVAAQL 575

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            Y+  RF W   L  ++ L+ D+   +G FA  G   +   +A++LT+IGYSVND VVV+
Sbjct: 576 AYLAYRFDWRLGLATVSALVADVVVLVGAFAWMGKTADGVFLASLLTVIGYSVNDSVVVF 635

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           DR+R+ ++       + +L+  ++ +T+ R+V T +     +  + V G   +  FA  +
Sbjct: 636 DRVRE-LRRADPRRDYPELVGSAVLQTIPRTVNTGIGVLFVLAALLVLGDGSLADFATAL 694

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G+V   +S+I  AAPI + +      NA
Sbjct: 695 LIGLVAGTASTIVTAAPIAIALDGRWGPNA 724



 Score = 82.8 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 68/219 (31%), Gaps = 4/219 (1%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +       G           +  +   +     +     VGP +  E I       
Sbjct: 209 GTGMIGGSTQITGSFTQDEAEDLALVIRSGALPVPVDVVEQRTVGPTLGAEAIDASARAA 268

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           II      +++   ++    +  +  +           A+ G    L  +A  +  +G +
Sbjct: 269 IIGVALTGLFLIGVYRLAGLVAVLALVAYAAVSYAALLAI-GATLTLPGLAGFVLAVGMA 327

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  V+V++   +  + +         +D            ++    ++   +       
Sbjct: 328 VDANVLVFE---RAREEFARRRRMPRSVDLGFRGAFSAVADSNATTLLAAGLLFWLAVGP 384

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  F + ++ G+V +  S++ ++  +L  I     +  R
Sbjct: 385 VKGFGVTLSIGVVASLFSALVLSRVLLQLIMPVLERRPR 423



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 71/251 (28%), Gaps = 19/251 (7%)

Query: 1   MRNNPWLV-ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M        +L   +  +G+L A                +      LGLDLRGG+ +VLE
Sbjct: 1   MPRPAARRELLVRGLLSLGVLAASAFL------------LLTTAPRLGLDLRGGTQIVLE 48

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
              D   +       + LR  + + G+    + +  + +I +     +      + +   
Sbjct: 49  -TPDGSASEATDRAMEVLRRRVDELGVAEPVLARSGDRRIVVELPGVQDPAEAVEVLGRT 107

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            Q     +                   V++ + I    +   +    I      +     
Sbjct: 108 AQLSVHPVTGAGGTPSPAGIGIALGDTVMTGDGIKNAQASPAQGG--IGWTVGIEFQGDA 165

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
               +  S       PG  DP R          +S  +V P+      M G         
Sbjct: 166 PAAWQRVSAEAACAPPG--DPRRQIAFRLDDEVISSPQVDPSVGCGTGMIGGSTQITGSF 223

Query: 239 NQYLVEDKVEI 249
            Q   ED   +
Sbjct: 224 TQDEAEDLALV 234


>gi|182677987|ref|YP_001832133.1| protein-export membrane protein SecD [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633870|gb|ACB94644.1| protein-export membrane protein SecD [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 531

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 203/532 (38%), Positives = 312/532 (58%), Gaps = 9/532 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDR----FPSAMPKNRISLGLDLRGGSHL 56
           +R   W +     +     L+ LP+       +      P  +P   I LGLDL+GGSH+
Sbjct: 2   LRFATWKIASIIGMTLFAFLVILPSLFSPEQREAVSAHLPHWLPLRAIVLGLDLQGGSHV 61

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKV 115
           +LEVD    +   +    D+LR  L++E IG+   +  +   +    AD   +  +  K+
Sbjct: 62  LLEVDAPSVLKTQVDSLRDDLRRILREEKIGISGGIGLLPRGVQFRLADPAERAKLMPKL 121

Query: 116 TLFL--QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
                  GVN           +V   +  I +V++   I+  +  A++QS+E++R+R+D 
Sbjct: 122 QQLAGSSGVNLLGGNRAASFDIVEKDDGLIQVVVTDAAINDRVRRAVDQSIEVLRRRVDA 181

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +G +E  IQR G+ RIL+++PG QD S+L+++LGTTAK+ F  V    +    +  +  +
Sbjct: 182 LGTTEPNIQRQGNDRILVEVPGLQDTSKLKEILGTTAKLEFRLVAEPGTDPNEIEQLDQV 241

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +      +E +V + G  L  A   FD +T +PVV+  F+  G ++F EVT  N+G+P
Sbjct: 242 ESNGKLP--IEKRVMVQGEDLTDAQPGFDSRTQEPVVNFRFNIRGGQKFGEVTAANVGRP 299

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A+VLDG+V++AP I   I  G+ +ISG+FT+E A  LA +LRAG+LP KL+IVEER VG
Sbjct: 300 FAIVLDGKVISAPRIKGPITGGQGEISGSFTVEQANNLAILLRAGALPAKLSIVEERTVG 359

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG DSI  G  A   G  L+ L+M+V YG +G+ A+ ++ +++    A L LLGATLT
Sbjct: 360 PGLGQDSINAGKRAAYVGAALVALYMLVTYGIFGVFANLALLVHIAFIFAGLVLLGATLT 419

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL IG+AVDSN+L+ ERIREE    +S+  +LD GF+RA++TI DSN+T  +A
Sbjct: 420 LPGIAGIVLTIGMAVDSNVLIYERIREEAHAGRSIVSALDAGFNRAFATIVDSNVTMFVA 479

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             +L+F G G VRGFA+++ L IL ++ TA+++ R M+    R K+   + I
Sbjct: 480 AAILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMITLWYRSKRPTQLPI 531



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 74/176 (42%), Gaps = 5/176 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I  G     + A  + +Y+ + +   F + A   L++ I        L G  
Sbjct: 359 GPGLGQDSINAGKRAAYVGAALVALYMLVTYGI-FGVFANLALLVHIAFIFAGLVLLGAT 417

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+R+R+         S    +D   N      V +++
Sbjct: 418 LTLPGIAGIVLTIGMAVDSNVLIYERIREEAHA---GRSIVSALDAGFNRAFATIVDSNV 474

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             F++   +   G   +  FA+ +A GI+     +      +++ ++    +  ++
Sbjct: 475 TMFVAAAILYFLGSGPVRGFAVSLALGILT-TIVTAVTMTRMMITLWYRSKRPTQL 529


>gi|163793144|ref|ZP_02187120.1| Preprotein translocase subunit SecD [alpha proteobacterium BAL199]
 gi|159181790|gb|EDP66302.1| Preprotein translocase subunit SecD [alpha proteobacterium BAL199]
          Length = 520

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 204/533 (38%), Positives = 315/533 (59%), Gaps = 22/533 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   W + L +++C +G++ A PN  P++     PS +P  +I+LGLDL+GGS+L+L+V
Sbjct: 2   LQFPTWKIALVALVCLLGIVYAAPNMFPRNTFGDVPSGVPGRQINLGLDLQGGSYLLLQV 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D    V   L+   +  R  L+   IG   +            D+   E           
Sbjct: 62  DTAVVVQERLEAIVESARRELRDAKIGYLGLGVHGKAAAFDVRDAADLEKARQLAR---- 117

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                        +   T    + + L++  +  +  +A++QS+EI+R+R+D+ G  E  
Sbjct: 118 --------GLDTGITTKTEGDRVIVELTEQAVLDLSRNAVQQSIEIVRRRVDETGTREPL 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------- 232
           IQR G++RILIQLPG  +P R++ L+G TAK++FH V    S    M G           
Sbjct: 170 IQRQGNNRILIQLPGIDNPERIKALIGQTAKLTFHLVDTTASVADAMNGRVPPGSKVLPS 229

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
           + +   + Y+V+ +V ISG +L  +  +F     +PVV   FD +G RRF + T +N+G+
Sbjct: 230 VDNQGPSHYVVKRRVMISGENLVDSQPSFQDN--RPVVSFRFDSIGGRRFGQATTENVGR 287

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
           P A+VLD +V++APVI + I  G   ISG+F+++ A  LA +LRAG+LP  L ++EER+V
Sbjct: 288 PFAIVLDDKVISAPVIREPILGGTGIISGSFSVQEAQDLALLLRAGALPAPLTVLEERSV 347

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG+DSI  G  A + GLVL++ FM+V YG +G+ A+ ++ LN+ L L  LS+L ATL
Sbjct: 348 GPGLGADSIAAGKVASIVGLVLVIAFMVVAYGLFGIFANMALLLNIGLILGALSVLQATL 407

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAGIVL IG+AVD+N+L+ ER+REE    +S   +LD G+ RA++TI DSN+T L 
Sbjct: 408 TLPGIAGIVLTIGMAVDANVLIFERVREEIDNGRSPVNALDAGYRRAFTTIVDSNLTTLF 467

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           A V LF  G G V+GFA+T+G+ I+ SMFTA+ + R  +   +RY++  ++ I
Sbjct: 468 AAVFLFALGAGPVKGFAVTLGIGIMTSMFTAVMVTRLFVAMWVRYRRPATLPI 520



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 34/207 (16%), Positives = 84/207 (40%), Gaps = 4/207 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    Q      +  +   +    T+     VGP +  + I  G V  I+  + ++ 
Sbjct: 313 IISGSFSVQEAQDLALLLRAGALPAPLTVLEERSVGPGLGADSIAAGKVASIVGLVLVIA 372

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + +   F + A   L+L+I   LG  ++      L  +A ++  IG +V+  V++++
Sbjct: 373 FMVVAYGL-FGIFANMALLLNIGLILGALSVLQATLTLPGIAGIVLTIGMAVDANVLIFE 431

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +       S  + +D          V +++    + + +   G   +  FA+ + 
Sbjct: 432 RVREEI---DNGRSPVNALDAGYRRAFTTIVDSNLTTLFAAVFLFALGAGPVKGFAVTLG 488

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829
            GI+ +  +++ +    +     +R  
Sbjct: 489 IGIMTSMFTAVMVTRLFVAMWVRYRRP 515


>gi|114777997|ref|ZP_01452897.1| protein-export membrane protein SecD [Mariprofundus ferrooxydans
           PV-1]
 gi|114551603|gb|EAU54156.1| protein-export membrane protein SecD [Mariprofundus ferrooxydans
           PV-1]
          Length = 528

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 185/529 (34%), Positives = 300/529 (56%), Gaps = 27/529 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             W + L   +  + L+ +LPN +       +PSA+    +SLGLDL+GG HLVL+VD +
Sbjct: 5   PRWKIWLILTVLVVSLMGSLPNIMS--TPSWWPSALSH-PMSLGLDLKGGVHLVLDVDVN 61

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   ++   D  R  L+KE I    +    N + ++  ++         +        
Sbjct: 62  KAVTHSVEEDVDTARQVLRKEKIRYRKLASEGNTLKITIKEASDLAAAETLLKDTFS--- 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                    NL     +    + L  +  D+    A++Q++E+IR RID +G +E  I +
Sbjct: 119 -------NYNLSPAAADNTFVLTLKDSVADETRKFAVDQAIEVIRGRIDALGTTEPVIVK 171

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237
            G HRIL+Q+PG +D +R +QL+G TA++ F  V      +  M G     D        
Sbjct: 172 QGDHRILVQIPGYEDSARAKQLIGRTAELQFKLVDEKGDLEKAMAGSIPPGDIIMYGPAK 231

Query: 238 --------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                      YL++   E+SG  +  A  + D + ++  V + F+  G+ RF ++T  +
Sbjct: 232 RGANGQLNRQPYLLKKHTELSGSEIADARVSIDSRFNEYAVTLKFNSKGSHRFDKLTAAH 291

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +G+  A++L+G V +APVI + I  G AQI+G+FT   A  LA +LRAG+LP  + +VEE
Sbjct: 292 VGERFAIILEGVVNSAPVIRERISGGSAQITGSFTPAEAHDLAIILRAGALPAPVQVVEE 351

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R++G  LG DSI +G  +I+ G + +++FM + Y  +G+VA+ ++  N++L +  +S++G
Sbjct: 352 RSIGPSLGQDSIDQGMKSIIIGTLFVLVFMGIYYRMFGMVANVALIFNMLLIIGAMSMIG 411

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           +TLTLP +AGIVL IG+AVD+N+L+ ERIREE    ++   ++D G+ +A+STI D+NIT
Sbjct: 412 STLTLPGMAGIVLTIGMAVDANVLIFERIREELNLGKTPLAAIDGGYDKAFSTIIDANIT 471

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
            LIA +VLF FG G V+GFA+T+ + IL SMFTAI++ RA++      +
Sbjct: 472 TLIAAIVLFQFGSGPVKGFAVTLSVGILASMFTAITVTRAIIAVSTEKR 520



 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 91/178 (51%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP + ++ I +G+  +II  + +L+++ I ++  F + A   LI ++   +G  ++ G
Sbjct: 353 SIGPSLGQDSIDQGMKSIIIGTLFVLVFMGIYYRM-FGMVANVALIFNMLLIIGAMSMIG 411

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++++R+R+ + L     +    ID   ++     +  
Sbjct: 412 STLTLPGMAGIVLTIGMAVDANVLIFERIREELNL---GKTPLAAIDGGYDKAFSTIIDA 468

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I+ + +  +G   +  FA+ ++ GI+ +  ++I +   I+    + RA+  ++
Sbjct: 469 NITTLIAAIVLFQFGSGPVKGFAVTLSVGILASMFTAITVTRAIIAVSTEKRARIEKL 526


>gi|260433304|ref|ZP_05787275.1| protein-export membrane protein SecD [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417132|gb|EEX10391.1| protein-export membrane protein SecD [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 553

 Score =  248 bits (632), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 202/547 (36%), Positives = 309/547 (56%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43
           W  +L  ++C +GLL+ALPN                         Q+   ++P+ +P + 
Sbjct: 7   WKRVLIWLVCVVGLLLALPNAFYTRVEQSNDARAAIEQGNDTPEMQAQAAQWPNWLPSSL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100
           ++LGLDLRGG+HL+ EV   D     ++    E+R+ L+     V ++R+     ++I +
Sbjct: 67  VNLGLDLRGGAHLLAEVQVSDVYETRMEAMWPEIRNALRDVRSEVGTIRRQPSEPDEIRI 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +         + V    + + S          +       I + LS+          +
Sbjct: 127 RISRPEGMPRALEVVRGLARPIQSLTGAGATDIDV-RAEGDTIVVQLSEAEKLASDDRTV 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
            Q++EI+R+RID++G  E TIQR GS RILIQ+PG    S L++++GTTA+++F+ V+  
Sbjct: 186 RQALEIVRRRIDEVGTREPTIQRQGSDRILIQVPGIGSASELKEIIGTTAQLTFNPVVSR 245

Query: 221 NSKKGFMFG----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
            +      G    V    D +G  Y +E    ++G  L  A  +FD    +P V   F+ 
Sbjct: 246 GTDPDAPAGIGEKVVPSIDENGVYYTIEAAPVVTGEELVDAQPSFDQNG-RPAVSFRFNT 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR+F + TRDNIG P A+VLD  V++APVI   IP G   I+GNFT+E +  LA +LR
Sbjct: 305 TGARKFGDYTRDNIGAPFAIVLDNEVISAPVIQSHIPGGSGIITGNFTVEESTNLAVLLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L  +EER +G +LG DSI  G  A +   V +++FM + YG +G+ A+ ++ +
Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIEAGKVATIVAFVAVLVFMALSYGLFGIFANIALLI 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           NV L   LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++++G+
Sbjct: 425 NVGLIFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKSAKGPARAIELGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            +A S I D+N+T  I  V+LF  G G VRGFAIT+GL IL S+FTAI + R M++    
Sbjct: 485 EKALSAILDANVTTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMVVMWFE 544

Query: 517 YKKMKSI 523
            ++ K+I
Sbjct: 545 RRRPKTI 551



 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 90/175 (51%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G V  I++ +A+L+++ + +   F + A   L++++    G  +L G
Sbjct: 379 TIGPELGQDSIEAGKVATIVAFVAVLVFMALSYGL-FGIFANIALLINVGLIFGLLSLIG 437

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K   ++      I+    + L   +  
Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---SAKGPARAIELGYEKALSAILDA 494

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   +++  ++ R   
Sbjct: 495 NVTTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMVVMWFERRRPK 549


>gi|77919487|ref|YP_357302.1| preprotein translocase subunit SecF [Pelobacter carbinolicus DSM
           2380]
 gi|77545570|gb|ABA89132.1| protein translocase subunit secF [Pelobacter carbinolicus DSM 2380]
          Length = 307

 Score =  248 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 169/302 (55%), Gaps = 2/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPV 589
             +I   I I F+  R   +  S++  +  +  L   G  NYGIDF GG  + V      
Sbjct: 1   MQVIKHDININFVGWRKLALIFSLVLIVVGMGSLVVKGGPNYGIDFSGGTLIQVKFTEAT 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             + ++S L+ + +  +  QNF+G+ +  +         +        +  + T      
Sbjct: 61  KAAQIKSALKEMDMKGLLVQNFEGDSHEFLLRAQDTSSELEGLADEIRLHLEKTYGEGTV 120

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I+  E+VGP++ ++L +KG++ ++ + + +LIYI IRF++ FA+GAI  L+ D+  TLG
Sbjct: 121 EIRRVEMVGPQVGKDLRKKGLLAIVFAMVGVLIYITIRFEFKFAVGAIIALLHDVLITLG 180

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+LF  E +L  +AA L +IGYS+ND ++VYDR+R+N    +T   F   ++ SINETL
Sbjct: 181 AFSLFNKEIDLPIIAAFLAIIGYSLNDTIIVYDRIRENCAK-STKEEFPTRVNASINETL 239

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ TS    + +L + ++GG VI +FA  M  G+VV   SSIF+A+P+LLF  D++ +
Sbjct: 240 SRTILTSGTTLLVILALFLFGGGVIHNFAFAMLVGVVVGTYSSIFVASPVLLFWDDYKNR 299

Query: 830 NA 831
             
Sbjct: 300 KQ 301


>gi|188583933|ref|YP_001927378.1| protein-export hypothetical protein SecD [Methylobacterium populi
           BJ001]
 gi|179347431|gb|ACB82843.1| protein-export membrane protein SecD [Methylobacterium populi
           BJ001]
          Length = 533

 Score =  248 bits (631), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 201/535 (37%), Positives = 309/535 (57%), Gaps = 13/535 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ--------SMLDRFPSAM-PKNRISLGLDLR 51
           +R +   ++    +  IGL +A+P+F+P         S+   FPS + P   I LGLDL+
Sbjct: 2   LRFSRTKIVATLAVILIGLSLAVPSFIPADSRKAFMASLPSWFPSWIIPSRAIVLGLDLQ 61

Query: 52  GGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKEN 110
           GGS ++LE+D+ D V   +    D++R  L++  +     +R I   + L   D+  +  
Sbjct: 62  GGSQILLEIDQPDLVRSMVTGLRDDVRRILREASVSPEGGIRVINRGVELRIPDAAARAK 121

Query: 111 IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
           +  K+    Q +N+ L    +   +       I +VL+   I+     A+ Q++E++R+R
Sbjct: 122 VMPKLRELAQPINNPLAAGGQTLTVNEAENGTIQLVLTDAGINDRTRRAVSQAIEVVRKR 181

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
           ID  G  E +IQ+ GS RIL+Q+PG Q+P  L   LG TAK+ F  +            +
Sbjct: 182 IDFGGTKEPSIQQQGSDRILVQVPGLQNPQELEDQLGKTAKLEFRMLAD---SPSGDVDL 238

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
              +D  G +  VE +V   G  L  A   FDP+TH+P+V   F+  GA+RF + T +N+
Sbjct: 239 LPSKDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENV 298

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           G+ +A+VLD  + +APVI  AI  G  QI+GNFT++ A  L+ +LRAG+LP KL +VE R
Sbjct: 299 GRRMAIVLDNVIQSAPVIRSAITGGSGQITGNFTVKDANDLSVLLRAGALPAKLTVVERR 358

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG  LG DSI  G  A +    L+++FM   YG +G +A+ ++ ++V L L L+S+L A
Sbjct: 359 VVGPGLGRDSIEAGEKATLVAAALVIIFMFATYGVFGFIANIALIVHVGLILGLMSVLEA 418

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           T+TLP IAGIVL IG AVDSN+L+ ER+REE R  +S+  +L  GF RA++TI DSN T 
Sbjct: 419 TMTLPGIAGIVLTIGTAVDSNVLIYERMREEARSGRSLVSALQAGFDRAFATIIDSNSTM 478

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            IA ++LFF G G V+GFA+   L IL ++ TA+++ R M+     + + K++  
Sbjct: 479 AIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYTWFRPKALPF 533



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 76/174 (43%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + R+ I  G    +++A  ++I+++  +   F   A   LI+ +   LG  ++    
Sbjct: 361 GPGLGRDSIEAGEKATLVAAALVIIFMFATYGV-FGFIANIALIVHVGLILGLMSVLEAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+RMR+  +   +  S    +    +      + ++ 
Sbjct: 420 MTLPGIAGIVLTIGTAVDSNVLIYERMREEAR---SGRSLVSALQAGFDRAFATIIDSNS 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I+ L +   G   +  FA+    GI+    +++ +   ++   Y W    A
Sbjct: 477 TMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYTWFRPKA 530


>gi|296446021|ref|ZP_06887971.1| protein-export membrane protein SecD [Methylosinus trichosporium
           OB3b]
 gi|296256539|gb|EFH03616.1| protein-export membrane protein SecD [Methylosinus trichosporium
           OB3b]
          Length = 529

 Score =  248 bits (631), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 191/530 (36%), Positives = 305/530 (57%), Gaps = 7/530 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDR----FPSAMPKNRISLGLDLRGGSHL 56
           +R + W +I    +    + + +P+ +  + L       P       I LGLDL+GGS++
Sbjct: 2   LRFSKWKIIAVLALTLSAIFVVVPSLVSPASLQAISKALPEWAQPRTIVLGLDLQGGSYV 61

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKV 115
           +LEVD+   ++  +    D++R  L++E I +   +      + L   D+  +     K+
Sbjct: 62  MLEVDKASVLHTQVTNLRDDVRRILREEKIAITGGIGAQARGVQLRVPDAADRAKAMPKL 121

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               QG  +          +    +  I IV+++  +   +  A++QS+E+IR+R+D +G
Sbjct: 122 RQLAQGFGAARMGGAPPLEVREGEDGLIQIVVTEVGVTDKVRRAVDQSIEVIRRRVDALG 181

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             E +IQR G  RI++Q+PG QDP +L+ +LG TAK+ F  V    +       +     
Sbjct: 182 TREPSIQRQGDDRIIVQVPGLQDPEQLKTILGQTAKLEFRLVAEPGASPSETEELEQTEQ 241

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
               +  +E +V + G  L  A   FD +  +PVV+  F+  GA++F +VT  N+G+  A
Sbjct: 242 QG--KIGIEKQVMVQGEDLTDAQPGFDQRNGEPVVNFRFNIRGAQKFGDVTSKNVGRLFA 299

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD +V++AP I   I  G  QISG+FT+E A  L+ +LRAG+LP KL+IVEER VG  
Sbjct: 300 IVLDNKVISAPRILTPITGGSGQISGHFTVEQANNLSILLRAGALPAKLDIVEERTVGPG 359

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI  G  A   G  L+V++M++ YG +G+ A+ ++F+++    A L L G+TLTLP
Sbjct: 360 LGQDSIDAGKRAAYVGAGLVVVYMLITYGVFGIFANLALFVHIAFIFAGLVLTGSTLTLP 419

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL IG+AVDSN+L+ ERIREE    +S+  SLD GF+RA++TI DSN+T  +A  
Sbjct: 420 GIAGIVLTIGMAVDSNVLIYERIREEQHGGRSILASLDAGFNRAFATIVDSNVTMFVAAA 479

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +L+F G G VRGFA+++ L IL ++ TA+++ R M+     + +   + I
Sbjct: 480 ILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMIAAWYHFARPTRLPI 529



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 74/174 (42%), Gaps = 4/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++ I  G     + A  +++Y+ I +   F + A   L + I        L G
Sbjct: 355 TVGPGLGQDSIDAGKRAAYVGAGLVVVYMLITYGV-FGIFANLALFVHIAFIFAGLVLTG 413

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++Y+R+R+         S    +D   N      V +
Sbjct: 414 STLTLPGIAGIVLTIGMAVDSNVLIYERIREEQHG---GRSILASLDAGFNRAFATIVDS 470

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++  F++   +   G   +  FA+ +A GI+    +++ +   ++   Y +   
Sbjct: 471 NVTMFVAAAILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMIAAWYHFARP 524


>gi|282600820|ref|ZP_05979795.2| putative SecDF protein-export membrane protein [Subdoligranulum
           variabile DSM 15176]
 gi|282571028|gb|EFB76563.1| putative SecDF protein-export membrane protein [Subdoligranulum
           variabile DSM 15176]
          Length = 772

 Score =  247 bits (630), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 176/728 (24%), Positives = 313/728 (42%), Gaps = 72/728 (9%)

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ------D 198
           +    +         +  +  +I  R+  +GI++       +   +I     +      +
Sbjct: 58  VTFMPDGDVDATPEQMTAAKTVIEDRLVGLGITDYESYVDSNKDRIIVRFPWKTGESDFN 117

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
           P      +GTTAKM F K                           + +  +SG  +  A 
Sbjct: 118 PQTAIDEIGTTAKMVFRKGS-----------------------TADGEEILSGDDVTSAN 154

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTR--DNIGKPLAVVLDGRVLTAPVINQAIPSGK 316
           A +       VV + F   GA+ F + T      G P+++ LD   ++   +++AI  G+
Sbjct: 155 AAYSETD-GWVVQLKFSSEGAQAFADATTELAASGDPISIWLDDENISTASVDEAITGGE 213

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
           A I GNF  ++A  LA  + +G+LP  L+      +   LG+ S+     A +   VL+ 
Sbjct: 214 AIIKGNFDQDSAATLANQINSGALPFALSAESYSTISPTLGARSLEVMVLAGIVAFVLVA 273

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA-----TLTLPSIAGIVLGIGLAVDSN 431
           L MI+ Y   G +A  S+   V  TLA++S   +     TLTLP IAGI+LGIG+ VD+N
Sbjct: 274 LLMILRYRLPGTIAAVSLLGQVCATLAVVSGYFSVFPGSTLTLPGIAGIILGIGMGVDAN 333

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL-------------- 477
           ++  ERI+EE  KN+++  ++  GF    + I D N+T +I   +L              
Sbjct: 334 VITAERIKEELSKNKTLDGAIKSGFKMGLTPIIDGNVTIVIVAAILMGAFGPTDGFWAKV 393

Query: 478 ----FFFGGGAVRG----FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID-INPL 528
               FF+ G +  G    F  T+  S+L++    +   R M+   +  K +++       
Sbjct: 394 FNPIFFWFGPSTAGTIYSFGFTLLTSVLLNFVFGVWATRVMIRGAVHCKALRNPWLYGGK 453

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                      I F+  R      S       +      G++  ++FKGG  + +     
Sbjct: 454 KEGGAEYKTPTINFVGNRKKFYAFSCCVIAIVLIFSAVFGVSMDVEFKGGSMITLAYEGD 513

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ-PGDSVAQTRVLEMVKKKITEIVP 647
            DL  +++ + +             + +    L    PG     T  L+ +   + E  P
Sbjct: 514 ADLDALKNTVSTELNQSNLTLQTGSDISGGQTLTITLPGSETLSTDQLDGLLTTLNEQYP 573

Query: 648 LSTIQNTEIV--GPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLI 701
            +     E+      I  E + K +V ++ + + +L+Y+  RF+          A+  L+
Sbjct: 574 DNQFVQNEVSNVDATIGNEFLLKSLVALVAACVLILLYVAYRFRRIGGLKAGATAVVALL 633

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDL 760
            D+    G F L  I  N   +AA+LT++GYS+ND VV+YDR+R+N  L+    +  ++L
Sbjct: 634 HDMFIIFGVFVLLRIPLNGNFIAAMLTILGYSINDTVVIYDRIRENSALFGKKQMGLKEL 693

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSSIFIA 816
           ++ SIN++  RS+ TS+   +++  + V         I +FA P+ FG++    S+I IA
Sbjct: 694 VNLSINQSFSRSLMTSITTCLALGVICVVSVVYRLDSIYTFAFPLLFGMISGVYSTICIA 753

Query: 817 APILLFIY 824
            P+ +   
Sbjct: 754 TPLWVDWK 761


>gi|99080837|ref|YP_612991.1| preprotein translocase subunit SecD [Ruegeria sp. TM1040]
 gi|99037117|gb|ABF63729.1| protein-export membrane protein SecD [Ruegeria sp. TM1040]
          Length = 554

 Score =  246 bits (628), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 207/548 (37%), Positives = 301/548 (54%), Gaps = 32/548 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43
           W  +L  ++C  GLL ALPN                           +  ++P  MP   
Sbjct: 7   WKRVLIWLVCVAGLLAALPNAFYTRVEQSNDAWAAIELEGETPERLDVAAQWPEWMPSGL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI----QNKIT 99
           ++LGLDLRGG+HL+ EV   D     +     E+R+ L+ E   + + R+I     ++I 
Sbjct: 67  VNLGLDLRGGAHLLAEVQVGDVYAARMDALWPEVRNTLRDERATIGTFRRIPDAPADQIR 126

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           L  +D        + V      V S          +       I++ LS+          
Sbjct: 127 LRLSDEAGMSRALELVRGLANPVTSLTGAGATDITVS-GQGDVITVSLSEEEKLASDDRT 185

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           + QS+EIIR+RID++G  E TIQR GS RILIQ+PG    + L++++GTTA+++F+ V+ 
Sbjct: 186 VRQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKEIIGTTAQLTFNPVVS 245

Query: 220 NNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
             S      G+        D  G  Y VE    ++G  L  A   FD    +P V+  F+
Sbjct: 246 RGSDAEANAGIGNKVIPSLDEPGTYYTVETAPVVTGEELVDAQPAFDQNG-QPAVNFRFN 304

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
             GAR+F + T  NIG P A+VLD  V++APVI   IP G   I+GNFT+E +  LA +L
Sbjct: 305 TAGARKFGDYTAQNIGAPFAIVLDDEVISAPVIRSHIPGGSGIITGNFTVEESTQLAVLL 364

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           RAG+LP KL  +EER +G +LG DSI  G  A V     +++FM++ YG +G+ A+ ++ 
Sbjct: 365 RAGALPAKLEFLEERTIGPELGQDSIDAGKVATVVAFAGVLVFMMLSYGLFGVFANVALI 424

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           LN+ L    LSL+G TLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++D G
Sbjct: 425 LNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEG 484

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           +S+A S I D+NIT  I  V+LF  G G VRGFAIT+GL IL S+FTAI + R +++   
Sbjct: 485 YSKALSAIVDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLIIVMWF 544

Query: 516 RYKKMKSI 523
             ++ K+I
Sbjct: 545 ERRRPKTI 552



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 88/175 (50%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G V  +++   +L+++ + +   F + A   LIL+I    G  +L G
Sbjct: 380 TIGPELGQDSIDAGKVATVVAFAGVLVFMMLSYGL-FGVFANVALILNIALIFGALSLIG 438

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K           ID+  ++ L   V  
Sbjct: 439 GTLTLPGIAGIVLTVGMAVDANVLIFERIREELKA---GRGPARAIDEGYSKALSAIVDA 495

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   I++  ++ R   
Sbjct: 496 NITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLIIVMWFERRRPK 550


>gi|328880239|emb|CCA53478.1| Protein-export membrane protein SecD [Streptomyces venezuelae ATCC
           10712]
          Length = 780

 Score =  246 bits (627), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 181/692 (26%), Positives = 326/692 (47%), Gaps = 36/692 (5%)

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
           +E++R+R+D +G++E ++ R G  RI+++LPG +DP     ++G TA+++FH V     +
Sbjct: 62  LEVLRKRVDGLGVAEPSLARSGERRIVVELPGLRDPREAADVIGRTAQLTFHAVTGTAGE 121

Query: 224 KGFMFGVR------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
            G               D+ G    +           +              VD++F + 
Sbjct: 122 TGGPAASPDGTRVLADPDAPGTFLTLAAPALTGDGVKSAEAVLDTQGGRGWTVDLAFRDG 181

Query: 278 GARRFFEVTRDNIGKPLAVVLDGR-------------VLTAPVINQAIPSGKAQISGNFT 324
            A  +  +T                            + T       I  G AQI+G F+
Sbjct: 182 AAGTWARLTGAAACAAPGDPARRVAIVLDDRVVSAPGMQTGVPCGAGIGGGSAQITGGFS 241

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            + A  LAA+++ G+LP+ +  VE+  VG  LG+D+I     A V GL     F+IV+Y 
Sbjct: 242 GQEARDLAALVQGGALPVPVTTVEQSTVGPTLGADAIRASALAAVIGLACTGAFVIVVYR 301

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN-- 442
             G++A  ++ L  +++ A +  LGATLTLP +AG VL IG+AVD+N+LV ER REE   
Sbjct: 302 LLGVLATVALLLYGLISYAAVVALGATLTLPGLAGFVLAIGIAVDANVLVFERAREEYAA 361

Query: 443 ---RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
                 + +   L   F + +S + DS++T L+A  +LF F  G V+GF +T+ + ++ S
Sbjct: 362 LGRTGGRDLRRPLATAFGKVWSAVADSHVTTLLAAGLLFVFATGPVKGFGVTLAIGVVTS 421

Query: 500 MFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
           + TA+ I R +    +R   ++       +  L R          + M  R   +     
Sbjct: 422 LLTAMVITRLLADLTLRLPAVRRRPAVTGMAGLGRLRTRLTRRVPRLMAHRRRWLLTCAG 481

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             + ++  +   G+ +G++F GG  +   A RPVD    R+ + +    D   Q      
Sbjct: 482 LLVAALAGIGVRGMEFGVEFTGGRIVQYTAERPVDADAARAAVTAAGFPDAVVQTTGEHD 541

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
             +                   +++ +T +      +  +++GP +  EL    ++ + +
Sbjct: 542 VSVRVR-------ETGDAEQTEIREALTRVAGPVEAERDDLIGPSLGGELRTHALLALGL 594

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           +  A L+Y+ +RF+W +A  A+  +  D+   +G FA  G   +   +AA+LT++GYSVN
Sbjct: 595 AVAAQLLYLTVRFRWTYATAAVAAMTQDVLLVVGLFAWLGKPVDSVFLAALLTVVGYSVN 654

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           D VVV D   + ++     +   DL D+++ +TL R+V T M A   ++ +AV GG  + 
Sbjct: 655 DSVVVLD-RLRELRRRGGGVPLADLADRAVAQTLPRTVNTGMGALFVLVALAVLGGDSLT 713

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            F++ +  G+V+  +S++F A P+ + +    
Sbjct: 714 DFSVALLAGVVLGMASTVFTAMPLAVALETRN 745


>gi|117926491|ref|YP_867108.1| protein-export membrane protein SecD [Magnetococcus sp. MC-1]
 gi|117610247|gb|ABK45702.1| protein-export membrane protein SecD [Magnetococcus sp. MC-1]
          Length = 525

 Score =  245 bits (625), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 193/540 (35%), Positives = 311/540 (57%), Gaps = 30/540 (5%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           MR    W + L  ++    +  ALP+ L        PS MP   I  GLDL+GG +L+ +
Sbjct: 1   MRQQPRWKLYLVVLVALGSIYYALPSLLG----GNLPSWMPNKVIHQGLDLQGGLYLLYD 56

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLF 118
           V  ++ +        D  R+ L+KE      + +   +++ +    +   E +   +   
Sbjct: 57  VKVEEAIKQAGNNMVDSARNLLRKERQRYRGIEQVGADQVVIRLTPNSDTERMLSVLKDE 116

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+          +  +     E +I + L +    ++   A++Q++EIIR RID  G+SE
Sbjct: 117 LR----------ESKVEHFQPEAQIRLTLGEAEKVEIRKFAVDQAIEIIRNRIDAFGVSE 166

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-- 236
            +IQ+ G  RI++QLPG ++P R + L+G TA++ F  V         + G         
Sbjct: 167 PSIQKQGERRIIVQLPGIKNPDRAKGLIGRTARLDFKLVNEKGDLNRALEGQVPADSELM 226

Query: 237 -----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                           LV  +  +SG H+  A   F+    +P+V + FD +G R+F ++
Sbjct: 227 YEERSANQGGKSAYPLLVFKRTILSGQHIQNAQTTFNEYN-EPIVSVKFDAVGGRKFSQI 285

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T ++I + LA+VLDG+V +APVI   I  G+A ISG+FT E A  LA +LRAG+LP  L 
Sbjct: 286 TGEHIKERLAIVLDGKVQSAPVIQDKIAGGRATISGSFTREEAHDLAIVLRAGALPAPLV 345

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           I+EER VG  LG+DS+ +G  +++ G VL+VLFM++ Y  +G++A+ ++ LNV + ++LL
Sbjct: 346 ILEERTVGPTLGADSVAQGLNSVLIGGVLVVLFMVLYYKGFGMLANLAVVLNVTILVSLL 405

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           +L+ ATLTLP IAG VL +G+AVD+N+L+ ERIREE R  +S   ++D G+S+A+STI D
Sbjct: 406 ALMQATLTLPGIAGAVLLLGMAVDANVLIFERIREELRLGKSPLAAIDHGYSKAFSTILD 465

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +NIT LI  V+L+ FG G VRGFA+T+ + +L SMFTAI + R ++  +++ +++K++ I
Sbjct: 466 ANITTLITAVILYQFGTGPVRGFAVTLSVGLLASMFTAIFVTRVVLAEVVKNRRLKTLSI 525



 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 87/173 (50%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + + +G+  V+I  + +++++ + +K  F + A   ++L++T  +   AL    
Sbjct: 353 GPTLGADSVAQGLNSVLIGGVLVVLFMVLYYK-GFGMLANLAVVLNVTILVSLLALMQAT 411

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  + L+G +V+  V++++R+R+ ++L     S    ID   ++     +  ++
Sbjct: 412 LTLPGIAGAVLLLGMAVDANVLIFERIREELRL---GKSPLAAIDHGYSKAFSTILDANI 468

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I+ + +  +G   +  FA+ ++ G++ +  ++IF+   +L  +   R   
Sbjct: 469 TTLITAVILYQFGTGPVRGFAVTLSVGLLASMFTAIFVTRVVLAEVVKNRRLK 521


>gi|308273582|emb|CBX30184.1| Protein-export membrane protein secD [uncultured Desulfobacterium
           sp.]
          Length = 525

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 187/543 (34%), Positives = 291/543 (53%), Gaps = 36/543 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   W + L  ++    ++  LP F         P   P  +I+LGLDL+GG HL LEV
Sbjct: 1   MKIFSWKLYLSVIVLITAIIYFLPTFK--------PGIWPHKKINLGLDLQGGMHLALEV 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119
           + +  V   ++  +++L+   + + +    + R    KI++        +     +    
Sbjct: 53  ESEKAVESSIERMANDLKGLFRSQHLSYQKIERIEGTKISIVLEGQENIDGFDKILEKEF 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKE---ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           + +           ++  + +     I +   +   + +   AIEQ++E IR RIDQ G+
Sbjct: 113 KELR----------IVSRSNDGGLLKIVMDYPEKEAETIKKLAIEQALETIRNRIDQFGV 162

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           SE  I   G  RI++QLPG  D  R ++L+G TA + F  +      +  +         
Sbjct: 163 SEPDISLEGKDRIIVQLPGVSDTQRAKELIGKTALLEFKLLDETQDPEKALSEGAPPGTE 222

Query: 237 D--------------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
                             YLV+    ++G  L+GA+   D + ++P V I FD  GA+ F
Sbjct: 223 ILYETKEDPRTRRVMKQPYLVKKLTLLTGASLSGASVQIDSQYNEPYVSIDFDNKGAKSF 282

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
             +T +N+ K LA+VLD +V +APVI + I  G A+I+G+FT E A  LA +LRAG+LP 
Sbjct: 283 ERITEENVKKRLAIVLDNKVYSAPVIQEKISGGHARITGSFTAEEARDLAIVLRAGALPA 342

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
            + I+EER VG  LG+DSI KG  ++  G +LI +FM   Y   G+VAD  +  NV+L  
Sbjct: 343 PVKIIEERTVGPSLGTDSINKGLLSMWIGGLLIFVFMAFYYKWSGVVADIGLVFNVLLIT 402

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
             L+   ATLTLP +AGIVL IG+AVD+N+L+ ERIREE    ++   ++D GF RA  T
Sbjct: 403 GALAAFQATLTLPGLAGIVLTIGMAVDANVLIYERIREELALGKTARAAVDAGFERATWT 462

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           I DSN+T LIA +VLF FG G V+GFA+T+ + I+ ++FTA+ + R +  + I  +K+K 
Sbjct: 463 ILDSNVTTLIAGLVLFQFGTGPVKGFAVTLSIGIVTTVFTALIMTRVIFEYFIYDRKIKK 522

Query: 523 IDI 525
           + I
Sbjct: 523 LSI 525



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I KG++ + I  + + +++   +KW   + A   L+ ++    G  A F   
Sbjct: 353 GPSLGTDSINKGLLSMWIGGLLIFVFMAFYYKWS-GVVADIGLVFNVLLITGALAAFQAT 411

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+R+R+ + L     + R  +D          + +++
Sbjct: 412 LTLPGLAGIVLTIGMAVDANVLIYERIREELAL---GKTARAAVDAGFERATWTILDSNV 468

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
              I+ L +  +G   +  FA+ ++ GIV    +++ +   I   FIYD + K 
Sbjct: 469 TTLIAGLVLFQFGTGPVKGFAVTLSIGIVTTVFTALIMTRVIFEYFIYDRKIKK 522


>gi|86138469|ref|ZP_01057043.1| protein-export membrane protein SecD [Roseobacter sp. MED193]
 gi|85824994|gb|EAQ45195.1| protein-export membrane protein SecD [Roseobacter sp. MED193]
          Length = 553

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 213/547 (38%), Positives = 306/547 (55%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43
           W  +L  ++C  GLL+ALPN                         Q++++++PS +P + 
Sbjct: 7   WKRVLIWLVCLTGLLLALPNGFYTRVEQSNDAAAEIIAKGDTPERQALVEQWPSYLPSSL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100
           ++LGLDLRGG+HL+ EV  +D     +     E+R  L+ E   V S R+ Q    +I L
Sbjct: 67  VNLGLDLRGGAHLLAEVKVEDVYGARMDALWPEVRDALRPERATVGSFRRQQAPEGQIRL 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +         + V      + S          +   T   I+I LS+          +
Sbjct: 127 KISKPEGMGRALEVVRGLANPITSLTGAGANDIDVS-GTGDLITIELSEAEKLASDDRTV 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
            QS+EIIR+RID++G  E TIQR G+ RILIQ+PG    S L+ ++GTTA+++F  V+  
Sbjct: 186 RQSLEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSASELKAIIGTTAQLTFSPVVGR 245

Query: 221 NSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
            S      GV        D  G  Y +E    ++G  L  A  +FD    +P V+  F+ 
Sbjct: 246 GSDPDAPAGVGNKVIPSVDEPGAFYTIEAAPVVTGEELVDAQPSFDQNG-RPAVNFRFNT 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR+F + T +NIG P A+VLD  V++APVI   IP G   I+GNFTIE +  LA +LR
Sbjct: 305 SGARKFGDYTAENIGSPFAIVLDDEVISAPVIQSHIPGGSGIITGNFTIEESTNLAILLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L  +EER +G +LG DSI  G  A +   V +++FM + YG +GL A+ ++ L
Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKIATIVAFVGVLVFMALSYGLFGLFANVALIL 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           NV L    LSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++D G+
Sbjct: 425 NVALIFGFLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREEIKSGRGPARAIDEGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           S+A S I D+NIT  I  V+LF  G G VRGFAIT+GL I+ S+FTAI + R M++    
Sbjct: 485 SKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRLMIVMWFE 544

Query: 517 YKKMKSI 523
            ++ K I
Sbjct: 545 RRRPKKI 551



 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 91/176 (51%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +  I++ + +L+++ + +   F L A   LIL++    GF +L G
Sbjct: 379 TIGPELGQDSIDAGKIATIVAFVGVLVFMALSYGL-FGLFANVALILNVALIFGFLSLIG 437

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K   +       ID+  ++ L   +  
Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREEIK---SGRGPARAIDEGYSKALSAILDA 494

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   +++  ++ R    
Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRLMIVMWFERRRPKK 550


>gi|84688039|ref|ZP_01015900.1| protein-export membrane protein SecD [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84663945|gb|EAQ10448.1| protein-export membrane protein SecD [Rhodobacterales bacterium
           HTCC2654]
          Length = 555

 Score =  245 bits (624), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 190/551 (34%), Positives = 298/551 (54%), Gaps = 33/551 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQ------------------------SMLDRFPSAM 39
           + +  ++  ++   GL  A+PN                            +    +P  +
Sbjct: 5   SIFKRVVIILVVVTGLAYAMPNLFYPRVETHNDAVTAIEQAGGEATPELAADRSAWPGWL 64

Query: 40  PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR---QIQN 96
           P N ++LGLDLRGG+HL+ EV  +D     +     E+   L+     V ++R       
Sbjct: 65  PSNLVNLGLDLRGGAHLLAEVQVEDVYKQRMDSIWQEVFPVLRDARDIVGTIRRVPTEDG 124

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
            + +   D+   ++ A  V      V +          +      EI + LS+       
Sbjct: 125 TLRVKIGDTTHIDDAAQLVRALATPVVTITGTGSTNFTV-DVEGDEIVVALSEAEKLATD 183

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
              I+QS+EIIR+R+D++G  E TIQR G  RILIQ+PG      L+ L+GTTA+++F  
Sbjct: 184 DRTIQQSLEIIRRRVDEVGTREPTIQRQGEDRILIQVPGLGSADELKALIGTTAQLTFQP 243

Query: 217 VLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
           V+   +      G         D +G  Y++ED   ++G  L  A  +F     +P V+ 
Sbjct: 244 VVSRTTNPDQAPGPNNVLYPSVDEEGVYYVLEDVPVVTGEDLVDAQPSF-DTNGRPAVNF 302

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
            F+  GAR F + T +N+G P A+VLD  V++AP IN+ IP G   I+GNFT+E +  LA
Sbjct: 303 RFNPHGARLFGDYTAENVGSPFAIVLDSEVISAPRINEHIPGGSGIITGNFTVEESTNLA 362

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
            +LRAG+LP ++  +EER +G +LG+DSI  G  A +     +++FM + YG +G++A+ 
Sbjct: 363 VLLRAGALPAEMTFLEERTIGPELGADSIAAGEIASLVAFAGVLVFMALSYGWFGMIANV 422

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++ LNV +   LLS +GATLTLP IAGIVL IG+AVD+N+LV ERIREE +  +    ++
Sbjct: 423 ALILNVAMLFGLLSAIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKNKRGPARAI 482

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           D+G+ +A S I D+NIT  +   +LF  G G VRGFA+T+GL ++ S+FTAI + R M++
Sbjct: 483 DLGYEKALSAIIDANITTFLTAGILFIMGSGPVRGFAVTLGLGLITSVFTAIFVTRLMVV 542

Query: 513 FIIRYKKMKSI 523
                ++ K++
Sbjct: 543 IWFERRRPKTL 553



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G+   +      V  +   +    T      +GP++  + I  G +  +++   +L+
Sbjct: 348 IITGNFTVEESTNLAVLLRAGALPAEMTFLEERTIGPELGADSIAAGEIASLVAFAGVLV 407

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + + W F + A   LIL++    G  +  G    L  +A ++  IG +V+  V+V++
Sbjct: 408 FMALSYGW-FGMIANVALILNVAMLFGLLSAIGATLTLPGIAGIVLTIGMAVDANVLVFE 466

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K           ID    + L   +  ++  F++   + + G   +  FA+ + 
Sbjct: 467 RIREELK---NKRGPARAIDLGYEKALSAIIDANITTFLTAGILFIMGSGPVRGFAVTLG 523

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G++ +  ++IF+   +++  ++ R   
Sbjct: 524 LGLITSVFTAIFVTRLMVVIWFERRRPK 551


>gi|170740722|ref|YP_001769377.1| protein-export membrane protein SecD [Methylobacterium sp. 4-46]
 gi|168194996|gb|ACA16943.1| protein-export membrane protein SecD [Methylobacterium sp. 4-46]
          Length = 534

 Score =  244 bits (623), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 204/536 (38%), Positives = 307/536 (57%), Gaps = 14/536 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF----PSAM----PKNRISLGLDLRG 52
           +R +   ++    +  +GL +A+P+F        F    PS +    P   I LGLDL+G
Sbjct: 2   LRFSSSKLVGTLAVIIVGLALAIPSFFSPEQRKAFVASAPSWLTALVPTRAIVLGLDLQG 61

Query: 53  GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI-GVFSMRQIQNKITLSFADSRFKENI 111
           GS +VLEVD  D      Q   D++R  L++EG+     ++     + L  +D   +   
Sbjct: 62  GSQIVLEVDRPDLTRTMAQQLRDDVRRALREEGVQADGGVQITPRGVQLRVSDPAARAKA 121

Query: 112 ADKVTLFLQGVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
             K+    Q V   +      +   +       I +  ++   +  +  A++Q++E++R+
Sbjct: 122 LPKLQALSQPVTDAVLGQTGARTLEVRDEPNGTIQLTFTEAGTNARVRRAVQQAIEVVRR 181

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
           R+D  G +E +IQ+ G+ RIL+Q+PG QDP RL + LG TAK+ F  +            
Sbjct: 182 RVDLGGTTEPSIQQQGADRILVQVPGLQDPQRLEEQLGKTAKLEFRMLAD---SAAGDVD 238

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
           +   RDS+G +  VE +V   G  L  A   FD KT++P+V+  F+  GA+RF + T +N
Sbjct: 239 LLPSRDSNGQKVPVERRVMADGADLTDAQPGFDQKTNEPIVNFKFNLRGAQRFGQATSEN 298

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +G+P+A+VLD  V++AP I Q I  G+ QISG FT++ A  L+ +LRAG+LP KLNI+E 
Sbjct: 299 VGRPMAIVLDNEVVSAPRILQPITGGQGQISGRFTVQQANDLSVLLRAGALPAKLNIIER 358

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG  LG DSI  G  A +A  VL+V  M   YG +GL A+ ++ ++V L L L+S+L 
Sbjct: 359 RTVGPGLGRDSIEAGKLATIAATVLVVTMMFACYGVFGLFANIALMVHVGLILGLMSVLE 418

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           AT+TLP IAGIVL IG AVDSN+L+ ER+REE R  +S+  +L  GF RA++TI DSN T
Sbjct: 419 ATMTLPGIAGIVLTIGTAVDSNVLIYERVREEVRAGRSIPSALQAGFDRAFATIVDSNST 478

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             IA ++LFF G G VRGFA+   L IL ++ TA+++ R M+       + K + I
Sbjct: 479 MAIAAIILFFMGSGPVRGFAVVFILGILTTVITAVTLTRMMIAVWYHRFRPKVLPI 534



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 73/173 (42%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + R+ I  G +  I + + ++  ++  +   F L A   L++ +   LG  ++    
Sbjct: 362 GPGLGRDSIEAGKLATIAATVLVVTMMFACYGV-FGLFANIALMVHVGLILGLMSVLEAT 420

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+R+R+ ++      S    +    +      V ++ 
Sbjct: 421 MTLPGIAGIVLTIGTAVDSNVLIYERVREEVRA---GRSIPSALQAGFDRAFATIVDSNS 477

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I+ + +   G   +  FA+    GI+    +++ +   ++   Y      
Sbjct: 478 TMAIAAIILFFMGSGPVRGFAVVFILGILTTVITAVTLTRMMIAVWYHRFRPK 530


>gi|83311613|ref|YP_421877.1| preprotein translocase subunit SecD [Magnetospirillum magneticum
           AMB-1]
 gi|82946454|dbj|BAE51318.1| Preprotein translocase subunit SecD [Magnetospirillum magneticum
           AMB-1]
          Length = 522

 Score =  244 bits (622), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 200/531 (37%), Positives = 317/531 (59%), Gaps = 25/531 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             W + L +++   G++ A+PN L +   DR P  +    +SLGLDL+GGS+L+LEVD  
Sbjct: 5   PKWKIALVAIVSLFGIVFAVPNLLSRDQADRMPHWL--QPVSLGLDLQGGSYLLLEVDTA 62

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 L    + +R+ L+KE I    +    +++++   ++  +    + +        
Sbjct: 63  YVFREQLTSLVEGVRTTLRKEKIKYSDLGARGDQVSVRIIEADERAKAREFLRKIDAEAA 122

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                      + T  +  + +  S+  +    + AIEQS+EI+R+RID++G  E +IQR
Sbjct: 123 -----------IETRDDGSMVLKYSEQAVKARKTAAIEQSLEIVRRRIDELGTREPSIQR 171

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL---------- 233
            G  RI++QLPG +DP R++ LLG TAK++FH +  +        G              
Sbjct: 172 QGEDRIVVQLPGVKDPDRIKALLGKTAKLTFHLLDDSTGADEAQKGRVPPGSMLLPSAEK 231

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                  Y+V  ++E+ G  L  + A +     +PVV   F   GA++F + TR+N GK 
Sbjct: 232 ERGMPESYVVRKRIEVGGDMLVDSKATYSEG--RPVVSFRFSAAGAKKFGDATRENAGKF 289

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+VLD +V++AP IN+ I  G   ISG+F+++ A  L+ +LRAG+LP  L ++EER VG
Sbjct: 290 LAIVLDEKVISAPRINEPILGGSGIISGSFSVQQAQDLSLLLRAGALPAPLQVLEERTVG 349

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
            DLG+DSI  G  A + GL L+V+ MI++YG  G +AD ++ LN+IL LA LS LGATLT
Sbjct: 350 PDLGADSIQAGAVASLLGLALVVVLMIIVYGSLGALADLAMVLNLILLLASLSALGATLT 409

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL +G+AVD+N+L+ ER+REE R  +S+  ++  G+ RA+ TIFD+++T L+A
Sbjct: 410 LPGIAGIVLTMGMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVA 469

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
             +LF FG G VRGFA+T+ L +L S+FTA+ + R M++  +R++++K++ 
Sbjct: 470 AALLFQFGSGPVRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLKTLP 520



 Score =  109 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 75/173 (43%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G V  ++    +++ + I +    AL A   ++L++   L   +  G  
Sbjct: 349 GPDLGADSIQAGAVASLLGLALVVVLMIIVYGSLGAL-ADLAMVLNLILLLASLSALGAT 407

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+RMR+  +      S    I    +   G      +
Sbjct: 408 LTLPGIAGIVLTMGMAVDANVLIYERMREEQR---NGRSIMSAIQAGYDRAFGTIFDAHV 464

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              ++   +  +G   +  FA+ +  G++ +  +++ +   +++    WR   
Sbjct: 465 TTLVAAALLFQFGSGPVRGFAVTLTLGLLASLFTAVLVNRIMVVTWVRWRRLK 517


>gi|217978987|ref|YP_002363134.1| protein-export membrane protein SecD [Methylocella silvestris BL2]
 gi|217504363|gb|ACK51772.1| protein-export membrane protein SecD [Methylocella silvestris BL2]
          Length = 532

 Score =  244 bits (621), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 207/532 (38%), Positives = 315/532 (59%), Gaps = 8/532 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF----PSAMPKNRISLGLDLRGGSHL 56
           +R   W ++   M+  I LL+ +P+ L            PS +P   I LGLDL+GGSH+
Sbjct: 2   LRFATWKIVSIVMMTVIALLLIVPSLLGPQSRAALMAHAPSFLPIRPIVLGLDLQGGSHV 61

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKV 115
           +LEVD    V   +    D +R  L++E   +   +  +   + L   D+  +E I  K+
Sbjct: 62  LLEVDGQSVVKTLIDNLRDSVRRTLREEKASISGGIGVLPRGVQLRIPDAAERERIMPKL 121

Query: 116 TLFLQGVNSKLNV--DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            L     ++ ++         +  T +  I   +++  I   +  A+EQS+E++R+R+D 
Sbjct: 122 RLLTAPASAGISGVGGASVFDVTETADGLIQFTVTEAGIKAKMRRAVEQSIEVLRRRVDA 181

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +G +E  IQR G  R+L+++PG QD  +L+++LGTTAK+ F  V            +   
Sbjct: 182 LGTTEPNIQRQGDDRVLVEVPGLQDTGKLKEILGTTAKLEFRLVSD-TGADPAETEMLEE 240

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            +  G++  V+ +V + G  L  A   FD +T +PVV+  F+  G +RF EVT +N+G+P
Sbjct: 241 VERPGSKLPVQKRVMVQGEDLTDAQPGFDQRTQEPVVNFRFNIRGGQRFGEVTSENVGRP 300

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A+VLDG+V++AP I   I  G  QISG+FT+E+A  LA +LRAG+LP KL IVEER VG
Sbjct: 301 FAIVLDGKVISAPRILGPITGGSGQISGHFTVESANNLAILLRAGALPAKLTIVEERTVG 360

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG DSI  G  A   G  L+  +M++ YG +G+ A+ ++F+++    A L LLGATLT
Sbjct: 361 PGLGQDSIDAGKRAAYVGAALVACYMLITYGIFGVFANIALFVHIAFIFAGLVLLGATLT 420

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL IG+AVDSN+L+ ERIREE+   +S+  SLD GF RA++TI DSN+T  +A
Sbjct: 421 LPGIAGIVLTIGMAVDSNVLIYERIREESHAGRSIVSSLDAGFKRAFATIVDSNVTMFVA 480

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             +L+F G G VRGFA+++ L IL ++ TA+++ R M+    RYK+   + I
Sbjct: 481 AAILYFLGSGPVRGFAVSLALGILTTIVTAVTMTRMMITLWYRYKRPVKLPI 532



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 71/176 (40%), Gaps = 5/176 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I  G     + A  +  Y+ I +   F + A   L + I        L G  
Sbjct: 360 GPGLGQDSIDAGKRAAYVGAALVACYMLITYGI-FGVFANIALFVHIAFIFAGLVLLGAT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+R+R+         S    +D          V +++
Sbjct: 419 LTLPGIAGIVLTIGMAVDSNVLIYERIREESHA---GRSIVSSLDAGFKRAFATIVDSNV 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             F++   +   G   +  FA+ +A GI+     +      +++ ++    +  ++
Sbjct: 476 TMFVAAAILYFLGSGPVRGFAVSLALGILT-TIVTAVTMTRMMITLWYRYKRPVKL 530


>gi|167647070|ref|YP_001684733.1| preprotein translocase subunit SecD [Caulobacter sp. K31]
 gi|167349500|gb|ABZ72235.1| protein-export membrane protein SecD [Caulobacter sp. K31]
          Length = 532

 Score =  244 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 174/529 (32%), Positives = 292/529 (55%), Gaps = 9/529 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W V    +    G++ +LPN LPQ  LD  P  +P  +++LGLDL+GGS+L+ EVD D
Sbjct: 5   SRWKVTAVILSVIFGIVFSLPNVLPQKTLDALPGWVPHQKLNLGLDLQGGSYLLYEVDTD 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 L    +++R+ L+ + I    + +    + +   D    +     +   + G  
Sbjct: 65  ALRAERLTNMVEDVRTTLRNDQIEFGELGEAGGVVRVRITDPGKVDQAVSLLRKSVGGPL 124

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +  +  +   +    +  + +           + A++QS+E IR+R+D +G  E TI R
Sbjct: 125 -QGAIGGRDTRIDNKGDGRLELSFVPEAAKADAAKAVDQSIETIRRRVDAMGTKEPTITR 183

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-------VRFLRDS 236
            G +RI+IQ  GE DP+RL+ ++G TAK++F  V    + +    G       V     +
Sbjct: 184 QGVNRIVIQAAGESDPARLQAVIGQTAKLTFQMVDETVTPEDMAAGRIPPGVMVIPGAQA 243

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  +  ++G  L  A   FD       V   F   GAR+F + T  N+GK  A+
Sbjct: 244 GAPPIPVAKRALVTGEDLVDANQTFDQNG-AAAVGFRFGGSGARKFGDATTRNVGKRFAI 302

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLD + ++ P INQ +P G   I+GNFT E+A  LA +LR+G+LP KLN+ E+R VGA+L
Sbjct: 303 VLDNKYISDPRINQPLPGGSGIITGNFTPESAAELALLLRSGALPAKLNLEEQRTVGAEL 362

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G+D++  G  ++  G   + +F+I+ YG +G  A  ++F+NV+L + ++S+  ATLT P 
Sbjct: 363 GADAVRAGAISLAIGAAAMFVFIILAYGLFGTFAAVALFVNVLLIIGIMSMTQATLTFPG 422

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG++L + +AVD+N+L+ ER+R+E    +S   + D G+ RA  +I D+NIT++I+ ++
Sbjct: 423 IAGLILTLAVAVDANVLIYERMRDEAAAGRSPMSAADTGYRRALVSIMDANITSVISALI 482

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +F  G G V+GFA T+ + +  S+FTAI I + ++ +  +  K K + I
Sbjct: 483 MFSMGAGPVKGFAWTLLIGVFTSLFTAILITQVLIGWWFKVTKPKKLPI 531



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 72/178 (40%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VG ++  + +R G + + I A AM ++I + +   F   A   L +++   +G  ++
Sbjct: 355 QRTVGAELGADAVRAGAISLAIGAAAMFVFIILAYGL-FGTFAAVALFVNVLLIIGIMSM 413

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                    +A ++  +  +V+  V++Y+RMR          S     D      L   +
Sbjct: 414 TQATLTFPGIAGLILTLAVAVDANVLIYERMRDEAAA---GRSPMSAADTGYRRALVSIM 470

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             ++ + IS L M   G   +  FA  +  G+  +  ++I I   ++ + +       
Sbjct: 471 DANITSVISALIMFSMGAGPVKGFAWTLLIGVFTSLFTAILITQVLIGWWFKVTKPKK 528


>gi|260426573|ref|ZP_05780552.1| protein-export membrane protein SecD [Citreicella sp. SE45]
 gi|260421065|gb|EEX14316.1| protein-export membrane protein SecD [Citreicella sp. SE45]
          Length = 553

 Score =  244 bits (621), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 190/547 (34%), Positives = 298/547 (54%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43
           W  +L   +   GL++A PN                         ++   ++P  +P + 
Sbjct: 7   WKRVLIWALVVAGLVLAAPNLFYSRVESHNDAVKAIEKSGSTAELEAQAGQWPEWLPSDL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITL 100
           ++LGLDLRGG+HL+ EV   D     ++    ++R  L+     V ++R   +    + +
Sbjct: 67  VNLGLDLRGGAHLLAEVRVADVYQSRMEALWPDVRDALRGARDEVGTIRLQSSEPGTLRV 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +         + V    Q V S          +      +I + LS+          +
Sbjct: 127 RISKPDGMARALELVRALAQPVVSLTGAGATDLEVS-GEGSDIVVQLSEAERQATDERTM 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217
            QS+EIIR+RID++G  E TIQR GS RILIQ+PG    + L+ ++GTTA+++F  V   
Sbjct: 186 RQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSATELKDIIGTTAQLTFQPVVSR 245

Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
               N   G    V    D DG  Y++E    ++G  L  +  +FD    +P V   F+ 
Sbjct: 246 TTNPNENAGSGNEVLPSLDEDGVYYVLEQAPVVTGEELVDSQPSFDQNG-RPAVTFRFNP 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR+F + T +NIG P A+VLD  V++APVI   I  G   I+GNF++E +  LA +LR
Sbjct: 305 SGARKFGDYTAENIGSPFAIVLDDEVISAPVIQSHIAGGSGIITGNFSVEESTNLAVLLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L+ +EER +G +LG DSI  G  A       +++FM + YG +GL A+ ++ L
Sbjct: 365 AGALPAGLDFLEERTIGPELGQDSIDAGKLATGVAFAAVLIFMALTYGLFGLFANVALIL 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N+ L + +LS +GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++++G+
Sbjct: 425 NIGLIMGILSAIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKSARGPARAIELGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            RA S I D+N+T +I  V+L+  G G VRGFAIT+GL I+ S+FTAI + R +++    
Sbjct: 485 ERALSAIIDANLTTIITAVILYVIGSGPVRGFAITLGLGIVTSVFTAIWVTRLLIVIWFE 544

Query: 517 YKKMKSI 523
            ++ +++
Sbjct: 545 RRRPRTL 551



 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 87/175 (49%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +   ++  A+LI++ + +   F L A   LIL+I   +G  +  G
Sbjct: 379 TIGPELGQDSIDAGKLATGVAFAAVLIFMALTYGL-FGLFANVALILNIGLIMGILSAIG 437

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K   ++      I+      L   +  
Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---SARGPARAIELGYERALSAIIDA 494

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++   I+ + + V G   +  FAI +  GIV +  ++I++   +++  ++ R   
Sbjct: 495 NLTTIITAVILYVIGSGPVRGFAITLGLGIVTSVFTAIWVTRLLIVIWFERRRPR 549


>gi|254467279|ref|ZP_05080690.1| protein-export membrane protein SecD [Rhodobacterales bacterium
           Y4I]
 gi|206688187|gb|EDZ48669.1| protein-export membrane protein SecD [Rhodobacterales bacterium
           Y4I]
          Length = 553

 Score =  243 bits (620), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 204/547 (37%), Positives = 304/547 (55%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43
           W  +L  ++C  GL++ALPN                              ++PS +P   
Sbjct: 7   WKRVLIWLVCAAGLMLALPNGFYTRVEQANDAAADIIAKGETPERLETAGQWPSFLPSGL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI---QNKITL 100
           ++LGLDLRGG+HL+ EV  +D     +     E+R  L+ E   V + R+     ++I L
Sbjct: 67  VNLGLDLRGGAHLLAEVQVEDVYEARMDALWPEVRDALRPERDTVGTFRRQPGPSDEIRL 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +         + V      + + L      ++ V+     + + LS+          +
Sbjct: 127 KLSKPDGMARALEIVRGLANPITT-LTGVGDNDIEVSAQGDILVVRLSEAEKIASDDRTV 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217
            QS+EI+R+RID++G  E TIQR G+ RILIQ+PG    S L+ ++GTTA+++F+ V   
Sbjct: 186 RQSLEIVRRRIDEVGTREPTIQRQGADRILIQVPGIGSASELKAIIGTTAQLTFNPVVGR 245

Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
               ++  G    V    D +G  Y +E    ++G  L  A  ++D    +P V   F+ 
Sbjct: 246 GSDPDAAPGMGNKVIPSLDEEGAYYTIEAAAVVTGEDLVDAQPSYDQNG-RPAVTFRFNT 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GARRF + T +NIG P A+VLD  V++APVI   IP G   I+GNFTIE +  LA +LR
Sbjct: 305 SGARRFGDYTAENIGSPFAIVLDDEVVSAPVIQSHIPGGSGIITGNFTIEESTNLAVLLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L  +EER +G +LG DSI  G  A +   V +++FM + YG +GL A+ ++ L
Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKIATIVAFVAVLVFMGLSYGLFGLFANVALIL 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N+ L   +LSL+G TLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++D G+
Sbjct: 425 NIALIFGMLSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKSGRGPAKAIDEGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           S+A S I D+NIT  I  V+LF  G G VRGFAIT+GL IL S+FTAI + R M++    
Sbjct: 485 SKALSAILDANITTFITAVILFAIGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVMWFE 544

Query: 517 YKKMKSI 523
            ++ K+I
Sbjct: 545 RRRPKTI 551



 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 91/175 (52%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +  I++ +A+L+++ + +   F L A   LIL+I    G  +L G
Sbjct: 379 TIGPELGQDSIDAGKIATIVAFVAVLVFMGLSYGL-FGLFANVALILNIALIFGMLSLIG 437

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K   +       ID+  ++ L   +  
Sbjct: 438 GTLTLPGIAGIVLTVGMAVDANVLIFERIREELK---SGRGPAKAIDEGYSKALSAILDA 494

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   +++  ++ R   
Sbjct: 495 NITTFITAVILFAIGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVMWFERRRPK 549


>gi|71894189|ref|YP_278297.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma
           synoviae 53]
 gi|71850977|gb|AAZ43586.1| Protein-export membrane protein SecD [Mycoplasma synoviae 53]
          Length = 864

 Score =  243 bits (620), Expect = 8e-62,   Method: Composition-based stats.
 Identities = 162/861 (18%), Positives = 323/861 (37%), Gaps = 72/861 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV--D 61
           + W   L S I  +   I +                    ++  +D  GG  ++++V  D
Sbjct: 12  SNWKRFLISAITIVSTFIVIVLGSV---------FYISKDVNKSIDYGGGIEVLVQVKKD 62

Query: 62  EDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           + +      +  +  L   L    G+   ++    +   +    +    N    +     
Sbjct: 63  DQNADKTLTEQVNKSLFDRLTGGTGLNGITVSSEGDG-KIRITKAGNVTNAQRDIFEK-- 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                     +K +L  T      +    +                       IG  ++ 
Sbjct: 120 -------EISEKPILTVTDINLKPLFFDGSFTANGSLD---------------IGTPQNW 157

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           +               +D  +L                  + +      V    D D   
Sbjct: 158 VPPFALGAAKYVNQNGRDSVQLTLKNSDARLEWTKATDYLSKQSQPNNLVLMWLDIDKLL 217

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           ++ + +  +          NF    ++    I        R   +  +   K +  + + 
Sbjct: 218 HIAKTQYPLEWKESGENLWNFVHVNNQAYTQIQDPVTNQPR---LVANEFKKNVLDIQNK 274

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +++   +N  I + +  I+GNFT   A  LA  +  G     ++I+    + ++L  ++
Sbjct: 275 YLISVAQVNNPISTSEVIINGNFTNTQAQELANRINFGLSDYSIDILSSVFLSSNLNDNA 334

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A +    LI +FMIV YG  G++   SI L + LTL + ++L    +  +IA +
Sbjct: 335 FQSAIIAGIVIFSLISIFMIVNYGLLGVLTTISIALYIYLTLLMFTVLRGEYSPVTIAAL 394

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++GIG++VD+N++  ER+++      S+  +       + S+I D+NIT +I   +LF+F
Sbjct: 395 IIGIGISVDANVITYERLKKYVYSGDSLKKAFYSSNRLSLSSILDANITTIIIAFILFYF 454

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI-------DINPLSRFFL 533
           G   VRG++IT+ LSIL ++   +   R +   ++     +               +  L
Sbjct: 455 GTKDVRGYSITLTLSILFTLLVMLVFSRFLSYMLVNTGLFEKRLYLLGLHKKYINHKTKL 514

Query: 534 IPDCIAIQFMRARFWGVGISI-LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                   + +   W V  S+    I  I      G N  I       +       ++++
Sbjct: 515 AKINENFNYYKNAKWFVLASLSFMVISLIVFASISGANKDIWAGLNRNIEFTGGINLNIA 574

Query: 593 VVRSN---LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV--------------- 634
             R+    L   +  +I  Q  +  + F ++      D                      
Sbjct: 575 TDRNTANTLSLAEANEIKKQIVESSQTFNIKNVNSIIDIQKANEQGTNYVINIRSQQDLS 634

Query: 635 -LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
            +    K I   V       T  V    + +L++  I+   I  + +++Y+  R  W ++
Sbjct: 635 SIVNDIKNIATRVNPFINVATFTVSSSEAAKLVQNAILATGIGFVGIVLYLLFRMNWTYS 694

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           + AI  LI D    L F  +  ++ +   VAA+L++IG S+ND VV +DR+R+ +K   T
Sbjct: 695 IAAIIALIHDFLMVLAFVVITRLQVSTIIVAAMLSIIGLSINDTVVTFDRIREKIKFDYT 754

Query: 754 SI-----SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                    + +++ +I +T+ RS+YTS    ++V  +  +G ++  +F I M FGI + 
Sbjct: 755 GKILQKSDLKKIVNVAIADTIKRSIYTSFTTILAVSVILAFGNAINFTFNIVMLFGIAIG 814

Query: 809 ASSSIFIAAPILLFIYDWRAK 829
             SS+FIA+ +   +   R K
Sbjct: 815 VYSSVFIASWVWAKLEYIRQK 835



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 94/271 (34%), Gaps = 6/271 (2%)

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            L+         +           R V     ++ L+      IS    +   +    + 
Sbjct: 234 NLWNFVHVNNQAYTQIQDPVTNQPRLVANEFKKNVLDIQNKYLISVAQVNNPISTSEVII 293

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                +     +   +   +++        ++  +   ++    +  I+  I+    + I
Sbjct: 294 NGNFTNTQAQELANRINFGLSDYSIDI--LSSVFLSSNLNDNAFQSAIIAGIVIFSLISI 351

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + +     +    ++ L I  TL  F +   E++   +AA++  IG SV+  V+ Y+
Sbjct: 352 FMIVNYGLL-GVLTTISIALYIYLTLLMFTVLRGEYSPVTIAALIIGIGISVDANVITYE 410

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R++K +    +  S +     S   +L   +  ++   I    +  +G   +  ++I + 
Sbjct: 411 RLKKYVY---SGDSLKKAFYSSNRLSLSSILDANITTIIIAFILFYFGTKDVRGYSITLT 467

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             I+      +  +  +   + +      R+
Sbjct: 468 LSILFTLLVMLVFSRFLSYMLVNTGLFEKRL 498


>gi|240141047|ref|YP_002965527.1| putative protein-export membrane protein, SecD/SecF family
           [Methylobacterium extorquens AM1]
 gi|240011024|gb|ACS42250.1| putative protein-export membrane protein, SecD/SecF family
           [Methylobacterium extorquens AM1]
          Length = 532

 Score =  243 bits (618), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 199/534 (37%), Positives = 306/534 (57%), Gaps = 12/534 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK--------NRISLGLDLRG 52
           +R +   +     I  IGL +A+P+F  +   + F +A+PK          I LGLDL+G
Sbjct: 2   LRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQG 61

Query: 53  GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKENI 111
           GS ++LE+D+ D V   +    D++R  L++  +     +R I   + L   D+  +  +
Sbjct: 62  GSQILLEIDQPDLVRSMVTGLRDDVRRILREAAVSPEGGIRVINRGVELRIPDAAARAKV 121

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             K+      +N+ L    +   +       I IVL++  I+     A+ Q++E++R+RI
Sbjct: 122 MPKLRELAAPINNPLAAGGQTLTVNEAENGTIQIVLTEAGINDRTRRAVSQAIEVVRKRI 181

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           D  G  E +IQ+ G+ RIL+Q+PG Q+P  L   LG TAK+ F  +            + 
Sbjct: 182 DFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLAD---SPSGDVDML 238

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +D  G +  VE +V   G  L  A   FDP+TH+P+V   F+  GA+RF + T +N+G
Sbjct: 239 ASKDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVG 298

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           + +A+VLD  + +APVI  AI  G  QI+GNFT++ A  L+ +LRAG+LP KL +VE R 
Sbjct: 299 RRMAIVLDNVIQSAPVIRSAITGGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRV 358

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG  LG DSI  G  A +    L++ FM   YG +G +A+ ++ ++V L L L+S+L AT
Sbjct: 359 VGPGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIALIVHVGLILGLMSVLEAT 418

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           +TLP IAGIVL IG AVDSN+L+ ER+REE R  +S+  +L  GF RA++TI DSN T  
Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMA 478

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           IA ++LFF G G V+GFA+   L IL ++ TA+++ R M+     + + K++  
Sbjct: 479 IAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF 532



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 75/174 (43%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + R+ I  G +  +++   ++ +++  +   F   A   LI+ +   LG  ++    
Sbjct: 360 GPGLGRDSIEAGKMATLVAGGLVIAFMFATYG-TFGFIANIALIVHVGLILGLMSVLEAT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+RMR+  +      S    +    +      + ++ 
Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARG---GRSLVSALQAGFDRAFATIIDSNS 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I+ L +   G   +  FA+    GI+    +++ +   ++   Y+W    A
Sbjct: 476 TMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKA 529


>gi|114777998|ref|ZP_01452898.1| SecF protein [Mariprofundus ferrooxydans PV-1]
 gi|114551604|gb|EAU54157.1| SecF protein [Mariprofundus ferrooxydans PV-1]
          Length = 314

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 169/304 (55%), Gaps = 3/304 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             LI   I I F+  R   + IS L  I S+ +L   GLN+GIDF GG  + V  ++P  
Sbjct: 1   MQLIRPDININFIGKRKLAMAISALMIIISLGMLAIKGLNFGIDFTGGTLVEVKFDKPAK 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +RS +     G+   Q F   +  L+R+Q + G+  +      +             
Sbjct: 61  IADIRSAISPKGYGNAVIQEFGSPEEILIRVQNREGEKSSTISTAILDSLNAKFTADAVE 120

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++  EL   GI+ V+IS +A+LIY+  RF++ FALGA   L+ DIT  LG 
Sbjct: 121 MRRVEFVGPQVGDELTHAGIMAVLISMLAILIYVTFRFEFRFALGADAALLHDITIVLGL 180

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINE 767
           FA+ G EF L  +AA+LT+IGYS+ND +VV+DR+R+N        +  D   + + +IN+
Sbjct: 181 FAITGKEFTLPVIAALLTVIGYSLNDTIVVFDRIRENFAANRKRKNPEDEGLIANNAINQ 240

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TLGR++ TS    + V  + ++GG VI  FA  +  GI V   SSIFIA+PI+L +  + 
Sbjct: 241 TLGRTLMTSFTTLLVVFSLFLFGGEVIHDFAFALIAGIGVGTYSSIFIASPIMLSLAGYF 300

Query: 828 AKNA 831
             NA
Sbjct: 301 KGNA 304


>gi|302383726|ref|YP_003819549.1| protein-export membrane protein SecD [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194354|gb|ADL01926.1| protein-export membrane protein SecD [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 534

 Score =  242 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 193/529 (36%), Positives = 306/529 (57%), Gaps = 11/529 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W VI+       GLL+ALPN L  S     P  MPKN ++LGLDL+GGS+L+LEVD D
Sbjct: 5   SRWKVIVLIAALVFGLLLALPNVLSPSQRAALPGFMPKNTLNLGLDLQGGSYLLLEVDVD 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 +    +++R  L++ GI    + +      ++ AD    E    ++      + 
Sbjct: 65  AMRTKRIDNLIEDIRVGLREAGIATNQITRESGGAVVTLADPSQAEAAYQELRK---LIG 121

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +       +      ++  + +  +Q  +D + + A++QS+E++R+RID +G  E +I R
Sbjct: 122 APGANGAAERAATRLSDGRVRLAFTQQTLDTMGATAVDQSIEVVRRRIDSLGTREPSITR 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------DSD 237
            G+ RI++Q PGE DP+ L +++G TA+++F  V   NS +  + G           D  
Sbjct: 182 QGAERIVVQAPGESDPAALERVIGQTAQLTFQMVDTENSIQDALAGRVPPDAQLLVGDDG 241

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              YLV+ ++ +SG +L  A  + D    +P +   FD  GARRF E T  NIGKP A++
Sbjct: 242 QTPYLVKKRILVSGENLTKAEVSADQSG-RPAIGFRFDGQGARRFGEATAANIGKPFAII 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+V++AP IN AI  G   I G FTI  A  L  +L  G+LP  L + E R V A+LG
Sbjct: 301 LDGKVISAPTINGAILGGSGIIEGTFTIAQASELVNLLNGGALPAPLKVEERRTVTAELG 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           +D++  G  + + G ++IV FMI+ YG  +G ++   + LN +L +A +SL  ATLTLP 
Sbjct: 361 ADAVQNGKISTIIGFIIIVAFMILAYGFLFGGISVIGLVLNGLLIIAAMSLTQATLTLPG 420

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG+VL   +AVD+N+L+ ERIR+E R  +SV  SLD GF++A  TI D+N+T L+A  +
Sbjct: 421 IAGLVLTFAVAVDANVLIYERIRDEARAGRSVIASLDAGFNKAMGTIIDANLTTLVAAAI 480

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +F FG G VRGFA T+ + +  S+F+++ + + ++ + ++  K K++ I
Sbjct: 481 MFIFGAGPVRGFAWTLSIGVFTSVFSSVLVAQVLLAYWLKTTKSKTLPI 529



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 65/150 (43%), Gaps = 3/150 (2%)

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           + ++ + + + F   ++  L+L+    +   +L      L  +A ++     +V+  V++
Sbjct: 379 VAFMILAYGFLFGGISVIGLVLNGLLIIAAMSLTQATLTLPGIAGLVLTFAVAVDANVLI 438

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           Y+R+R   +      S    +D   N+ +G  +  ++   ++   M ++G   +  FA  
Sbjct: 439 YERIRDEARA---GRSVIASLDAGFNKAMGTIIDANLTTLVAAAIMFIFGAGPVRGFAWT 495

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++ G+  +  SS+ +A  +L +        
Sbjct: 496 LSIGVFTSVFSSVLVAQVLLAYWLKTTKSK 525


>gi|218532484|ref|YP_002423300.1| protein-export membrane protein SecD [Methylobacterium
           chloromethanicum CM4]
 gi|218524787|gb|ACK85372.1| protein-export membrane protein SecD [Methylobacterium
           chloromethanicum CM4]
          Length = 532

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 198/534 (37%), Positives = 306/534 (57%), Gaps = 12/534 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK--------NRISLGLDLRG 52
           +R +   +     I  IGL +A+P+F  +   + F +A+PK          I LGLDL+G
Sbjct: 2   LRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQG 61

Query: 53  GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKENI 111
           GS ++LE+D+ D V   +    D++R  L++  +     +R I   + L   D+  +  +
Sbjct: 62  GSQILLEIDQPDLVRSMVTGLRDDVRRILREAAVSPDGGIRVINRGVELRIPDAAARAKV 121

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             K+      +N+ L    +   +       I +VL++  I+     A+ Q++E++R+RI
Sbjct: 122 MPKLRELAAPINNPLAAGGQTLTVNEAENGTIQLVLTEAGINDRTRRAVSQAIEVVRKRI 181

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           D  G  E +IQ+ G+ RIL+Q+PG Q+P  L   LG TAK+ F  +            + 
Sbjct: 182 DFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLAD---SPSGDVDML 238

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +D  G +  VE +V   G  L  A   FDP+TH+P+V   F+  GA+RF + T +N+G
Sbjct: 239 TSKDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVG 298

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           + +A+VLD  + +APVI  AI  G  QI+GNFT++ A  L+ +LRAG+LP KL +VE R 
Sbjct: 299 RRMAIVLDNVIQSAPVIRSAITGGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRV 358

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG  LG DSI  G  A +    L++ FM   YG +G +A+ ++ ++V L L L+S+L AT
Sbjct: 359 VGPGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIALIVHVGLILGLMSVLEAT 418

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           +TLP IAGIVL IG AVDSN+L+ ER+REE R  +S+  +L  GF RA++TI DSN T  
Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMA 478

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           IA ++LFF G G V+GFA+   L IL ++ TA+++ R M+     + + K++  
Sbjct: 479 IAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF 532



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 75/174 (43%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + R+ I  G +  +++   ++ +++  +   F   A   LI+ +   LG  ++    
Sbjct: 360 GPGLGRDSIEAGKMATLVAGGLVIAFMFATYG-TFGFIANIALIVHVGLILGLMSVLEAT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+RMR+  +      S    +    +      + ++ 
Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARG---GRSLVSALQAGFDRAFATIIDSNS 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I+ L +   G   +  FA+    GI+    +++ +   ++   Y+W    A
Sbjct: 476 TMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKA 529


>gi|163853625|ref|YP_001641668.1| protein-export membrane protein SecD [Methylobacterium extorquens
           PA1]
 gi|163665230|gb|ABY32597.1| protein-export membrane protein SecD [Methylobacterium extorquens
           PA1]
          Length = 532

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 198/534 (37%), Positives = 306/534 (57%), Gaps = 12/534 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK--------NRISLGLDLRG 52
           +R +   +     I  IGL +A+P+F  +   + F +A+PK          I LGLDL+G
Sbjct: 2   LRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQG 61

Query: 53  GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKENI 111
           GS ++LE+D+ D V   +    D++R  L++  +     +R I   + L   D+  +  +
Sbjct: 62  GSQILLEIDQPDLVRSMVTGLRDDVRRILREAAVSPDGGIRVINRGVELRIPDAAARAKV 121

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             K+      +N+ L    +   +       I +VL++  I+     A+ Q++E++R+RI
Sbjct: 122 MPKLRELAAPINNPLAAGGQTLTVNEAENGTIQLVLTEAGINDRTRRAVSQAIEVVRKRI 181

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           D  G  E +IQ+ G+ RIL+Q+PG Q+P  L   LG TAK+ F  +            + 
Sbjct: 182 DFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLAD---SPSGDVDML 238

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +D  G +  VE +V   G  L  A   FDP+TH+P+V   F+  GA+RF + T +N+G
Sbjct: 239 ASKDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVG 298

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           + +A+VLD  + +APVI  AI  G  QI+GNFT++ A  L+ +LRAG+LP KL +VE R 
Sbjct: 299 RRMAIVLDNVIQSAPVIRSAITGGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRV 358

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG  LG DSI  G  A +    L++ FM   YG +G +A+ ++ ++V L L L+S+L AT
Sbjct: 359 VGPGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIALIVHVGLILGLMSVLEAT 418

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           +TLP IAGIVL IG AVDSN+L+ ER+REE R  +S+  +L  GF RA++TI DSN T  
Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMA 478

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           IA ++LFF G G V+GFA+   L IL ++ TA+++ R M+     + + K++  
Sbjct: 479 IAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF 532



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 75/174 (43%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + R+ I  G +  +++   ++ +++  +   F   A   LI+ +   LG  ++    
Sbjct: 360 GPGLGRDSIEAGKMATLVAGGLVIAFMFATYG-TFGFIANIALIVHVGLILGLMSVLEAT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+RMR+  +      S    +    +      + ++ 
Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARG---GRSLVSALQAGFDRAFATIIDSNS 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I+ L +   G   +  FA+    GI+    +++ +   ++   Y+W    A
Sbjct: 476 TMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKA 529


>gi|170748694|ref|YP_001754954.1| protein-export membrane protein SecD [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655216|gb|ACB24271.1| protein-export membrane protein SecD [Methylobacterium
           radiotolerans JCM 2831]
          Length = 534

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 202/536 (37%), Positives = 307/536 (57%), Gaps = 14/536 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSM--------LDRFPSAM-PKNRISLGLDLR 51
           +R +   +I    +  +GL +A+P+F                FPS + P   I LGLDL+
Sbjct: 2   LRFSRAKIIATLGLILVGLTLAVPSFFSPEQRKSFVAGLPSWFPSWVVPTRAIVLGLDLQ 61

Query: 52  GGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKEN 110
           GGS L+LEVD+++ +    +   D++R  L++E +     +  +Q  + +   D+  +  
Sbjct: 62  GGSQLLLEVDQNELIASQAKALRDDVRRVLQQENVRADGGIGLLQRGVQVKIDDAAARAK 121

Query: 111 IADKVTLFLQGVNSKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
           +  K+    Q + + L     + L +       I + L+   I      A+ Q +E+IR+
Sbjct: 122 VLPKLQELSQPITTSLGQTAARTLDVSEQPGGVIRLTLTDAGITDRTRRAVSQGIEVIRR 181

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
           R+D  G +E +IQ+ G+ RILIQ+PGEQ+P RL +LLG+TAK+ F  +            
Sbjct: 182 RLDSTGTTEPSIQQQGADRILIQVPGEQNPERLEKLLGSTAKLEFRMLAD---SPSGDVD 238

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
           +   +D  G +  VE +V   G  L  A   FD +TH+P+V   F+  GA+RF + T +N
Sbjct: 239 MLPSKDEKGAKVPVERRVMADGGELTDAQPAFDQQTHEPMVSFKFNLRGAQRFGQATSEN 298

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           IG+ +A+VLD  V++APVI  AI  G  QI+GNFT++ A  LA +LRAG+LP K  +VE 
Sbjct: 299 IGRRMAIVLDNEVVSAPVIRSAITGGSGQITGNFTVQQANDLAVLLRAGALPAKFTVVER 358

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG  LG DSI  G  A +    L+V FM   YG +G +A+ ++ ++V L L L+S+L 
Sbjct: 359 RVVGPGLGRDSIEAGKLATLVAAGLVVAFMFATYGTFGFIANIALMVHVGLILGLMSVLE 418

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           AT+TLP IAGIVL IG AVDSN+L+ ER+REE R  +S+  +L  GF RA++TI DSN T
Sbjct: 419 ATMTLPGIAGIVLTIGTAVDSNVLIYERMREEQRAGRSLISALQAGFDRAFATIIDSNST 478

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             IA ++LFF G G V+GFA+   L IL ++ TA+++ R M+       + K++  
Sbjct: 479 MAIAALILFFLGSGPVKGFAVVFILGILTTVITAVTLTRMMIAVWYNTFRPKTLPF 534



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 74/173 (42%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + R+ I  G +  +++A  ++ +++  +   F   A   L++ +   LG  ++    
Sbjct: 362 GPGLGRDSIEAGKLATLVAAGLVVAFMFATYG-TFGFIANIALMVHVGLILGLMSVLEAT 420

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+RMR+  +      S    +    +      + ++ 
Sbjct: 421 MTLPGIAGIVLTIGTAVDSNVLIYERMREEQRA---GRSLISALQAGFDRAFATIIDSNS 477

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I+ L +   G   +  FA+    GI+    +++ +   ++   Y+     
Sbjct: 478 TMAIAALILFFLGSGPVKGFAVVFILGILTTVITAVTLTRMMIAVWYNTFRPK 530


>gi|304372944|ref|YP_003856153.1| Protein-export membrane protein [Mycoplasma hyorhinis HUB-1]
 gi|304309135|gb|ADM21615.1| Protein-export membrane protein [Mycoplasma hyorhinis HUB-1]
          Length = 860

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 154/862 (17%), Positives = 329/862 (38%), Gaps = 74/862 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV--- 60
           N W     + +    ++  +     Q +            I+  ++  GG+ ++++V   
Sbjct: 12  NNWKRWFIAFLSFFTIVFVISYTSQQYI---------SKNINKSIEYGGGAEVLVQVKTL 62

Query: 61  DEDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLF 118
           D        ++   +E+ + L    G+   S+      +I +S  +    + +   ++  
Sbjct: 63  DNKAPSQSLVRTADEEIFTRLTGGSGLNGTSVSIEGEGRIRISRNNITDNKKLDAFISEI 122

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +      +  D  K L                    V + +++   EI      +   ++
Sbjct: 123 VTKPLLTITDDENKPLFYDGKF--------------VTNGSLDYGSEINWAPPFKSESAQ 168

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           +        +  +Q+  +   + L                  +    ++    F ++   
Sbjct: 169 ARPNPNNPSQNEVQIELKDKDAEL----------------EWSKATDYISKKPFGKNRIL 212

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +   + ++         N        +         A          + K      
Sbjct: 213 IWSNISGLINLAKTQYPNEWKNAKENIFNFIHVNENPTP-APLQNNQRASPVLKQYQFDA 271

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              +++   + QA+      I+GNF+   A  LA  +  G+   KL+ +    V      
Sbjct: 272 KKYLISDARVQQALNGSSFVINGNFSSAEAKQLALNINFGTANYKLDFLSASFVSQTKSD 331

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +      A++  +V+I LFMIV YG  G+++  S+ L + LTL   +++    +  +IA
Sbjct: 332 SAFTSAWIAVIVSIVVISLFMIVNYGLLGVLSTISLALYIFLTLLFFTVVRGEYSPITIA 391

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +++GIG+ VD+NI+  E ++ +     +V  S       + STI DSNIT LIA ++LF
Sbjct: 392 ALIIGIGMNVDANIINFEILKSKIYSGHTVNKSNAYANKSSLSTILDSNITTLIAGIILF 451

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSID 524
           FFG   ++ F+IT+  SI+ ++   +   + M   +              I+ K +K  +
Sbjct: 452 FFGTKNIKSFSITLIFSIIFTLLVIMLFTKLMTSLVLKTGFFDKRVYLLGIKPKYVKKYE 511

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQL 581
              +S           ++ R     + I  L        +        N  I+F GG  +
Sbjct: 512 RGYVSILEKPDYLALNKYTRWIPLVMFILALLLFAIFAGINHSVAGGLNLSIEFSGGTNI 571

Query: 582 -------GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                              +   LES  I + + Q      +    +      +      
Sbjct: 572 LIENQDPTYNLIDKTRGEEIIKFLESQGIKNNASQIVMHPLDAQNSVFNIEIKTQQDLTS 631

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           +             +    T  +  + +R L+   I+ V+++ + +  + +IRF+W F+L
Sbjct: 632 IIQNLNTTLSSKFSNLKFITYSISNEEARSLVLNAILSVVVAIVFVTTFAFIRFRWTFSL 691

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             I +L+ ++   +  F +F I+ + T V A+L++IGYS+ND +V++D++++  +    +
Sbjct: 692 AIIVSLLFNVLMVVFIFIIFHIKLSPTIVVALLSIIGYSINDIIVIFDKIKEIFRELPYT 751

Query: 755 -----ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                   + +  ++I ET+ RS+ TS++   ++  + ++  S+   F+  M  G+V   
Sbjct: 752 EVSDQARIKRIATQAIKETIKRSILTSLSTIFAIFVLMIFYNSIDILFSFAMFVGVVFGT 811

Query: 810 SSSIFIAAPILLFIYDWRAKNA 831
            SS+FIA  I + +   R K  
Sbjct: 812 FSSLFIATTIWVKLETKRNKRK 833


>gi|254563561|ref|YP_003070656.1| hypothetical protein METDI5231 [Methylobacterium extorquens DM4]
 gi|254270839|emb|CAX26844.1| putative protein-export membrane protein, SecD/SecF family
           [Methylobacterium extorquens DM4]
          Length = 532

 Score =  241 bits (615), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 198/534 (37%), Positives = 305/534 (57%), Gaps = 12/534 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK--------NRISLGLDLRG 52
           +R +   +     I  IGL +A+P+F  +   + F +A+PK          I LGLDL+G
Sbjct: 2   LRFSRTKIFATLAIILIGLSLAVPSFFSKEQREAFVNALPKSIQWMVPTRAIVLGLDLQG 61

Query: 53  GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKENI 111
           GS ++LE+D+ D V   +    D++R  L++  +     +R I   + L   D   +  +
Sbjct: 62  GSQILLEIDQPDLVRSMVTGLRDDVRRILREAAVSPDGGIRVINRGVELRIPDVAARAKV 121

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             K+      +N+ L    +   +       I +VL++  I+     A+ Q++E++R+RI
Sbjct: 122 MPKLRELAAPINNPLAAGGQTLTVNEAENGTIQLVLTEAGINDRTRRAVSQAIEVVRKRI 181

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           D  G  E +IQ+ G+ RIL+Q+PG Q+P  L   LG TAK+ F  +            + 
Sbjct: 182 DFGGTKEPSIQQQGASRILVQVPGLQNPQELEDQLGKTAKLEFRMLAD---SPSGDVDML 238

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +D  G +  VE +V   G  L  A   FDP+TH+P+V   F+  GA+RF + T +N+G
Sbjct: 239 ASKDEGGAKVPVERRVMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQRFGQATSENVG 298

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           + +A+VLD  + +APVI  AI  G  QI+GNFT++ A  L+ +LRAG+LP KL +VE R 
Sbjct: 299 RRMAIVLDNVIQSAPVIRSAITGGTGQITGNFTVKDANDLSVLLRAGALPAKLTVVERRV 358

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG  LG DSI  G  A +    L++ FM   YG +G +A+ ++ ++V L L L+S+L AT
Sbjct: 359 VGPGLGRDSIEAGKMATLVAGGLVIAFMFATYGTFGFIANIALIVHVGLILGLMSVLEAT 418

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           +TLP IAGIVL IG AVDSN+L+ ER+REE R  +S+  +L  GF RA++TI DSN T  
Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARGGRSLVSALQAGFDRAFATIIDSNSTMA 478

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           IA ++LFF G G V+GFA+   L IL ++ TA+++ R M+     + + K++  
Sbjct: 479 IAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKALPF 532



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 75/174 (43%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + R+ I  G +  +++   ++ +++  +   F   A   LI+ +   LG  ++    
Sbjct: 360 GPGLGRDSIEAGKMATLVAGGLVIAFMFATYG-TFGFIANIALIVHVGLILGLMSVLEAT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+RMR+  +      S    +    +      + ++ 
Sbjct: 419 MTLPGIAGIVLTIGTAVDSNVLIYERMREEARG---GRSLVSALQAGFDRAFATIIDSNS 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I+ L +   G   +  FA+    GI+    +++ +   ++   Y+W    A
Sbjct: 476 TMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIALWYNWFRPKA 529


>gi|110679780|ref|YP_682787.1| preprotein translocase subunit SecD [Roseobacter denitrificans OCh
           114]
 gi|109455896|gb|ABG32101.1| protein-export membrane protein SecD, putative [Roseobacter
           denitrificans OCh 114]
          Length = 553

 Score =  241 bits (614), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 195/547 (35%), Positives = 300/547 (54%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSM----------------------LDRFPSAMPKNR 43
           W  I   + C  GL +A+PN    ++                        ++P  MP   
Sbjct: 7   WKRITILLTCVAGLWLAMPNLFYTTVEQHNDAVQAIELGADTPENNALRAQWPEWMPSGL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI---QNKITL 100
           ++LGLDLRGG+HL+ EV   D     ++ Y  E+R  L+ E   + ++R      +++ +
Sbjct: 67  VNLGLDLRGGAHLLAEVRVADVYANRMESYWPEIRDALRPERETIGTIRLQPSPSDEVHV 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +         + V    + + +   V      +       + + +S+          +
Sbjct: 127 RISQPEGMPRALEIVRGLARPIQTITGVGANDIEV-RAEGDLLIVTMSEAEKLASDERTV 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217
           +QS+EIIR+RID++G  E TIQR GS RILIQ+PG    + L+ ++GTTA+++F+ V   
Sbjct: 186 QQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKDIIGTTAQLTFNPVVSR 245

Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
               N+  G    +    D  G  Y +E    ++G  L  A   FD    +P V+  F+ 
Sbjct: 246 GSDANASPGLGNKLVPSLDEPGTYYTIEAAAVVTGEELVDAQPAFDQNG-RPAVNFRFNT 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR+F + T +NIG P A+VLD  V++AP I   IP G   I+G FT+E +  LA +LR
Sbjct: 305 TGARKFGDYTAENIGSPFAIVLDNEVVSAPTIQSHIPGGSGIITGRFTVEESTNLAILLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L+ +EER +G +LG DSI  G  A +   + +++FM + YG +GL A+ ++ +
Sbjct: 365 AGALPAGLDFLEERTIGPELGQDSIDAGKIATIVAFLGVLVFMFLSYGMFGLFANVALII 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N+ L   LLS++G TLTLP IAGIVL +G+AVD+N+LV ERIREE + ++    ++++G+
Sbjct: 425 NIGLIFGLLSMIGGTLTLPGIAGIVLTVGMAVDANVLVFERIREELKTSKGPARAIELGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            +A S I D+NIT  I  V+LF  G G VRGFAIT+GL IL S+FTAI + R M++    
Sbjct: 485 EKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVIWFE 544

Query: 517 YKKMKSI 523
            K+ K I
Sbjct: 545 RKRPKKI 551



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 90/176 (51%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +  I++ + +L+++++ +   F L A   LI++I    G  ++ G
Sbjct: 379 TIGPELGQDSIDAGKIATIVAFLGVLVFMFLSYGM-FGLFANVALIINIGLIFGLLSMIG 437

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V+V++R+R+ +K   TS      I+    + L   +  
Sbjct: 438 GTLTLPGIAGIVLTVGMAVDANVLVFERIREELK---TSKGPARAIELGYEKALSAILDA 494

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   +++  ++ +    
Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVIWFERKRPKK 550


>gi|158522453|ref|YP_001530323.1| protein-export membrane protein SecD [Desulfococcus oleovorans
           Hxd3]
 gi|158511279|gb|ABW68246.1| protein-export membrane protein SecD [Desulfococcus oleovorans
           Hxd3]
          Length = 524

 Score =  241 bits (613), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 191/539 (35%), Positives = 288/539 (53%), Gaps = 29/539 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+N  W   +   +    L+  LP           P   P+  I+LGLDL+GG HL+LEV
Sbjct: 1   MKNFQWKQAITLAVLVAALIYVLPTI--------NPEWWPRKTINLGLDLQGGMHLILEV 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           + +  V   +     +L   L+KE +    +     KI++        E     +     
Sbjct: 53  ETEKAVEAQISGIGRDLEETLRKERVRHTDVTAKGQKISVLARGEENIERFKQVLDKDFA 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           G+          +        E  + L  + +  +   A+EQ++E IR RIDQ G+SE  
Sbjct: 113 GL-------AIVSSSRRDNTLEQVLGLPDDEVAHLKKMAVEQALETIRNRIDQFGVSEPV 165

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD----- 235
           I   G  +IL+QLPG  DP R + L+G TA + F  V   N     + G           
Sbjct: 166 IHIQGRRQILVQLPGVTDPQRAKDLIGKTALLEFRLVDEENDVAKAVRGQVPPGSELLYE 225

Query: 236 ---------SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                    +  +  L++    ++G  L+ A    D + ++P V I+F+  GA  F ++T
Sbjct: 226 VSTDPDTGRTIKSPLLIKRGTPLTGADLSDARVQIDAQYNEPYVSITFNRKGANIFAKIT 285

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
            +N+ K LA+VLD  + +APVI   I  G A+I+G+F+++ A  LA +LRAG+LP  + I
Sbjct: 286 EENLKKRLAIVLDNHIHSAPVIQDRITGGAARITGSFSMDEAHDLAIVLRAGALPAPVKI 345

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +EER VG  LG +SI KG  ++  G +++VLFM   Y K GL+AD ++  N++L  A L+
Sbjct: 346 LEERTVGPSLGKESIDKGLMSMYIGGLIVVLFMATYYRKAGLIADVALVFNILLIAAGLA 405

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            LGATLTLP IAGI+L IG+AVD+N+++ ERIREE R  +    S+  GF RA  TI D+
Sbjct: 406 ALGATLTLPGIAGIILTIGMAVDANVIIFERIREEIRTGKPPRASVAAGFDRAALTILDA 465

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           NIT LIA VVLF FG G V+GFA+T+ L ++ S+FTA+ + R +   I+  +K+  + I
Sbjct: 466 NITTLIAAVVLFQFGTGPVKGFAVTLSLGVMASLFTALVVSRQIFDLILTRRKVTHLSI 524



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 91/238 (38%), Gaps = 4/238 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                    ++ + +        +           G           +  +   +     
Sbjct: 285 TEENLKKRLAIVLDNHIHSAPVIQDRITGGAARITGSFSMDEAHDLAIVLRAGALPAPVK 344

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     VGP + +E I KG++ + I  + +++++   ++    L A   L+ +I      
Sbjct: 345 ILEERTVGPSLGKESIDKGLMSMYIGGLIVVLFMATYYR-KAGLIADVALVFNILLIAAG 403

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            A  G    L  +A ++  IG +V+  V++++R+R+ ++   T    R  +    +    
Sbjct: 404 LAALGATLTLPGIAGIILTIGMAVDANVIIFERIREEIR---TGKPPRASVAAGFDRAAL 460

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +  ++   I+ + +  +G   +  FA+ ++ G++ +  +++ ++  I   I   R 
Sbjct: 461 TILDANITTLIAAVVLFQFGTGPVKGFAVTLSLGVMASLFTALVVSRQIFDLILTRRK 518


>gi|330723456|gb|AEC45826.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma
           hyorhinis MCLD]
          Length = 860

 Score =  241 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 155/862 (17%), Positives = 334/862 (38%), Gaps = 74/862 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV--- 60
           N W     + +    ++  + +F  Q  +           I+  ++  GG+ ++++V   
Sbjct: 12  NNWKRWFIAFLSFFTIVFVI-SFTSQQYIS--------KNINKSIEYGGGAEVLVQVKTL 62

Query: 61  DEDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLF 118
           D        ++   +E+ + L    G+   S+      +I +S  +    + +   ++  
Sbjct: 63  DNKAPSQSLVRTADEEIFTRLTGGSGLNGTSVSIEGEGRIRISRNNITDNKKLDAFISEI 122

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +      +  D  K L                    V + +++   EI      +   ++
Sbjct: 123 VTKPLLTITDDENKPLFYDGKF--------------VTNGSLDYGSEINWAPPFKSESAQ 168

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           +        +  +Q+  +   + L                  +    ++    F ++   
Sbjct: 169 ARPNPNNPSQNEVQIELKDKDAEL----------------EWSKATDYISKKPFGKNRIL 212

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +   + ++         N        +  ++ +   A          + K      
Sbjct: 213 IWSNISGLINLAKTQYPNEWKNAKENIFNFI-HVNENSTPAPLQNNQPASPVLKQYQFDA 271

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              +++   + QA+      I+GNF+   A  LA  +  G+   KL+ +    V      
Sbjct: 272 KKYLISDARVQQALNGSSFVINGNFSSAEAKQLALNINFGTANYKLDFLSASFVSQTKSD 331

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +      A++  +V+I LFMIV YG  G+++  S+ L + LTL   +++    +  +IA
Sbjct: 332 SAFTSAWIAVIVSIVVISLFMIVNYGLLGVLSTISLALYIFLTLLFFTVVRGEYSPITIA 391

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +++GIG+ VD+NI+  E ++ +     +V  S       + STI DSNIT LIA ++LF
Sbjct: 392 ALIIGIGMNVDANIINFEILKSKIYSGHTVNKSNAYANKSSLSTILDSNITTLIAGIILF 451

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSID 524
           FFG   ++ F+IT+  SI+ ++   +   + M   +              I+ K +K  +
Sbjct: 452 FFGTKNIKSFSITLIFSIIFTLLVIMLFTKLMTSLVLKTGFFDKRVYLLGIKPKYVKKYE 511

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQL 581
              +S           ++ R     + I  L        +        N  I+F GG  +
Sbjct: 512 RGYVSILEKPDYLALNKYTRWIPLVMFILALLLFAIFAGINHSVAGGLNLSIEFSGGTNI 571

Query: 582 -------GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                              +   LES  I + + Q      +    +      +      
Sbjct: 572 LIENQDPTYNLIDKTRGEEIIKFLESQGIKNNASQIVMHPLDAQNSVFNIEIKTQQDLTS 631

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           +             +    T  +  + +R L+   I+ V+++ + +  + +IRF+W F+L
Sbjct: 632 IIQNLNTTLSSKFSNLKFITYSISNEEARSLVLNAILSVVVAIVFVTTFAFIRFRWTFSL 691

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             I +L+ ++   +  F +F I+ + T V A+L++IGYS+ND +V++D++++  +    +
Sbjct: 692 AIIVSLLFNVLMVVFIFIIFHIKLSPTIVVALLSIIGYSINDIIVIFDKIKEIFRELPYT 751

Query: 755 -----ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                   + +  ++I ET+ RS+ TS++   ++  + ++  S+   F+  M  G+V   
Sbjct: 752 EVSDQARIKRIATQAIKETIKRSILTSLSTIFAIFVLMIFYNSIDILFSFAMFVGVVFGT 811

Query: 810 SSSIFIAAPILLFIYDWRAKNA 831
            SS+FIA  I + +   R K  
Sbjct: 812 FSSLFIATTIWVKLETKRNKRK 833


>gi|84502989|ref|ZP_01001091.1| protein-export membrane protein SecD [Oceanicola batsensis
           HTCC2597]
 gi|84388734|gb|EAQ01605.1| protein-export membrane protein SecD [Oceanicola batsensis
           HTCC2597]
          Length = 543

 Score =  241 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 197/537 (36%), Positives = 305/537 (56%), Gaps = 21/537 (3%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ------------SMLDRFPSAMPKNRISLGLDLRGG 53
           W  IL      +GLL+ALPN                +  + +   +P   ++LGLDLRGG
Sbjct: 7   WKRILIWGTVALGLLLALPNAFYNRVESYNDAVAVGAPAEGWVDWLPSGLVNLGLDLRGG 66

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITLSFADSRFKEN 110
           +HL+ EV   D     ++    E+R+ L+     V ++R  Q   +++ +  ++      
Sbjct: 67  AHLLAEVRVGDVYETRMKGLWPEVRNRLRAARDTVGTIRLQQGPADELRVRISNPEAIGE 126

Query: 111 IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
               V    + V S L    + ++ VT+    + + LS+          + QS+EIIR+R
Sbjct: 127 AERIVEEIARPVVS-LTGAGQSDIEVTSEGDVLIVRLSEAERLATDDRTVRQSLEIIRRR 185

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV----LPNNSKKGF 226
           ID++G  E TIQR G+ RILIQ+PG    + L++++GTTA+++F  V      + +  G 
Sbjct: 186 IDEVGTREPTIQRQGTDRILIQVPGVGSAAELKEIIGTTAQLTFQPVVRRTTDDQTVAGP 245

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
              +    D +G  Y++ED   +SG  L  A  +FD       V+  F+  GAR+F + T
Sbjct: 246 GNELLPAMDEEGTFYVLEDTPVVSGEELVDAQPSFDQNGMPA-VNFRFNPSGARKFGDYT 304

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
            +NIG P A+VLD  V++APVI   I  G   I+GNFT+E +  LA +LRAG+LP  L+ 
Sbjct: 305 ANNIGNPFAIVLDNEVISAPVIQSHIAGGSGIITGNFTVEESTNLAVLLRAGALPAGLDF 364

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +EER +G +LG+DSI  G  A V  L  ++ FM+  YG +G+ A+ ++ +N+ L   LLS
Sbjct: 365 LEERTIGPELGADSIEAGRIASVVALAAVLFFMVASYGLFGVFANIALLVNIALVFGLLS 424

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           L+G TLTLP IAGIVL IG+AVD+N+LV ERIREE +  +    ++++G+ +A S I D+
Sbjct: 425 LIGGTLTLPGIAGIVLTIGMAVDANVLVFERIREEQKDRRGPARAIELGYEKALSAILDA 484

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           NIT  I  ++L+  G G VRGFAIT+GL IL S+FTA  + R +++     ++ K++
Sbjct: 485 NITTFITALILYVMGSGPVRGFAITLGLGILTSVFTAFFVTRLLVVIWFDRRRPKTL 541



 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 83/175 (47%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++  + I  G +  +++  A+L ++   +   F + A   L+++I    G  +L G
Sbjct: 369 TIGPELGADSIEAGRIASVVALAAVLFFMVASYGL-FGVFANIALLVNIALVFGLLSLIG 427

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V+V++R+R+  K           I+    + L   +  
Sbjct: 428 GTLTLPGIAGIVLTIGMAVDANVLVFERIREEQKD---RRGPARAIELGYEKALSAILDA 484

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ L + V G   +  FAI +  GI+ +  ++ F+   +++  +D R   
Sbjct: 485 NITTFITALILYVMGSGPVRGFAITLGLGILTSVFTAFFVTRLLVVIWFDRRRPK 539


>gi|288940929|ref|YP_003443169.1| protein-export membrane protein SecF [Allochromatium vinosum DSM
           180]
 gi|288896301|gb|ADC62137.1| protein-export membrane protein SecF [Allochromatium vinosum DSM
           180]
          Length = 316

 Score =  241 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 99/290 (34%), Positives = 165/290 (56%), Gaps = 2/290 (0%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I FMR R     +S    I  +  +   G ++G+DF GG  + +   +P +LS VR+ L
Sbjct: 11  NIDFMRQRKAAAWLSGAVLIVCLLSIVFRGFDFGLDFTGGTVIELGYAQPTELSDVRTAL 70

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI-QNTEIV 657
           E+  +G  + Q F    + L+RL  Q G+  A  ++ + V   ++         +  E V
Sbjct: 71  ETEGLGSATIQYFGSRTDILIRLAPQDGEEEASAQLSDRVFAALSRAAEGQVELRRVEFV 130

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G + V+ S I +LIY+ +RF+W FA+GA+  LI D+  T+G F+L  I 
Sbjct: 131 GPQVGEELREQGGLAVLFSLIGILIYVALRFEWRFAVGAVVALIHDVLFTVGVFSLLQIP 190

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +V++DR+R+N +      +   +I+ SINETL R++ TS 
Sbjct: 191 FDLTVLAAVLAVIGYSLNDTIVIFDRVRENFRRMRKG-TVIGIINNSINETLSRTIVTSG 249

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + ++ +   GG  I  FA+ +  GI+V   S+I++A  I++++   R
Sbjct: 250 TTLLVLVALYFLGGETINGFALALIIGILVGTYSTIYVATAIVVWLGLSR 299


>gi|159044408|ref|YP_001533202.1| preprotein translocase subunit SecD [Dinoroseobacter shibae DFL 12]
 gi|157912168|gb|ABV93601.1| protein-export membrane protein SecD [Dinoroseobacter shibae DFL
           12]
          Length = 554

 Score =  241 bits (613), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 194/553 (35%), Positives = 303/553 (54%), Gaps = 32/553 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ-----------------------SMLDRFPS 37
           ++   W  +L   +  IGL  ALPN                           + L ++P+
Sbjct: 2   LQIPLWKRVLIWGVVLIGLSYALPNAFYSRVETHNDAAALVEAGAAETGEIAADLGQWPA 61

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-- 95
            +P + ++LGLDLRGG+HL+ EV   D     +  +  E+R  L+     V ++R+    
Sbjct: 62  FLPSSLVNLGLDLRGGAHLLAEVQVADVYADRMDAFWPEVRDALRDARDTVGTIRRQDSP 121

Query: 96  -NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
            +++ +  ++          V    Q + S   V      +      ++ I LS+     
Sbjct: 122 PDQLRVRISNPEEITRAVAIVRGLAQPIVSFTGVGQDDIEVS-FEGADLIIELSEAEKQA 180

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
                ++QS+EIIR+R+D+ G  E TIQR G  R+LIQ+PG    S L++L+G TA+++F
Sbjct: 181 TDDRTLQQSLEIIRRRVDEAGTREPTIQRQGEDRVLIQVPGIASASELKELIGQTARLTF 240

Query: 215 HKVLPNNSKKGFMFG----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           + V+   S      G    V    D     Y++E    +SG  L  A  +FD    +P V
Sbjct: 241 NPVVSRTSDPDAPPGPRNIVLPSIDEPNTYYVLEQTPVVSGDQLTDAQPSFDQNG-RPAV 299

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
           +  F+  GAR F + T +NIG P A+VLD  V++APVI   IP G   I+GNF++E +  
Sbjct: 300 NFRFNPTGARLFGDYTAENIGSPFAIVLDNEVISAPVIQSHIPGGSGIITGNFSVEESTQ 359

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +LRAG+LP ++  +EER +G +LG DSI  G  A +  L  +++FM++ YG +G+ A
Sbjct: 360 LAVLLRAGALPAEMIFLEERTIGPELGQDSIEAGALACLVALGAVLVFMMLSYGLFGVFA 419

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
           + ++ LN+ L   +LSL+GATLTLP IAGIVL IG+AVD+N+LV ERIREE +  +    
Sbjct: 420 NIALLLNIALIFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKTARGPAR 479

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           ++++G+ +A S I D+N T  I   +LF  G G VRGFA+T+G+ I+ S+FTAI + R +
Sbjct: 480 AIELGYEKALSAIVDANTTTFIVAAILFTLGAGPVRGFAVTLGIGIVTSVFTAIFVTRLL 539

Query: 511 MIFIIRYKKMKSI 523
           ++     ++ K I
Sbjct: 540 IVLWFERRRPKQI 552



 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 92/209 (44%), Gaps = 4/209 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G+   +      V  +   +           +GP++ ++ I  G +  +++  A+L+
Sbjct: 347 IITGNFSVEESTQLAVLLRAGALPAEMIFLEERTIGPELGQDSIEAGALACLVALGAVLV 406

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + +   F + A   L+L+I    G  +L G    L  +A ++  IG +V+  V+V++
Sbjct: 407 FMMLSYGL-FGVFANIALLLNIALIFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFE 465

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   T+      I+    + L   V  +   FI    +   G   +  FA+ + 
Sbjct: 466 RIREELK---TARGPARAIELGYEKALSAIVDANTTTFIVAAILFTLGAGPVRGFAVTLG 522

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            GIV +  ++IF+   +++  ++ R    
Sbjct: 523 IGIVTSVFTAIFVTRLLIVLWFERRRPKQ 551


>gi|163731952|ref|ZP_02139399.1| protein-export membrane protein SecD, putative [Roseobacter
           litoralis Och 149]
 gi|161395406|gb|EDQ19728.1| protein-export membrane protein SecD, putative [Roseobacter
           litoralis Och 149]
          Length = 553

 Score =  241 bits (613), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 197/547 (36%), Positives = 299/547 (54%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSM----------------------LDRFPSAMPKNR 43
           W  I   + C  GL +A+PNF   ++                         +P  MP   
Sbjct: 7   WKRITILLTCVAGLWLAMPNFFYTTVEQHNDAVQAIELGADTPENAALRAGWPEWMPSGL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI---QNKITL 100
           ++LGLDLRGG+HL+ EV   D     ++ Y  E+R  L+ E   + ++R      +++ +
Sbjct: 67  VNLGLDLRGGAHLLAEVRVADVYANRMESYWPEIRDSLRPERETIGTIRLQPSPSDEVHV 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +         + V    + + +   V      +       + + +S+          +
Sbjct: 127 RISQPEGMPRALEIVRGLARPIQTITGVGANDIEV-RAEGDLLIVTMSEAEKLASDERTV 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217
           +QS+EIIR+RID++G  E TIQR GS RILIQ+PG    + L+ ++GTTA+++F+ V   
Sbjct: 186 QQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKDIIGTTAQLTFNPVVSR 245

Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
               N+  G    +    D  G  Y +E    ++G  L  A   FD    +P V+  F+ 
Sbjct: 246 GSDANASPGLGNKLVPSVDEPGAFYTIEAAAVVTGEELVDAQPAFDQNG-RPAVNFRFNT 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR+F + T +NIG P A+VLD  V++AP I   IP G   I+G FT+E +  LA +LR
Sbjct: 305 SGARKFGDYTAENIGSPFAIVLDDEVVSAPTIQSHIPGGSGIITGRFTVEESTNLAILLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L  +EER +G +LG DSI  G  A +   V +++FM + YG +GL A+ ++ +
Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKIATIIAFVGVLVFMFLSYGMFGLFANVALII 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N+ L   LLS++G TLTLP IAGIVL +G+AVD+N+LV ERIREE + ++    ++++G+
Sbjct: 425 NIGLIFGLLSMIGGTLTLPGIAGIVLTVGMAVDANVLVFERIREELKTSKGPARAIELGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            +A S I D+NIT  I  V+LF  G G VRGFAIT+GL IL S+FTAI + R M++    
Sbjct: 485 EKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVIWFE 544

Query: 517 YKKMKSI 523
            K+ K I
Sbjct: 545 RKRPKKI 551



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 90/176 (51%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +  II+ + +L+++++ +   F L A   LI++I    G  ++ G
Sbjct: 379 TIGPELGQDSIDAGKIATIIAFVGVLVFMFLSYGM-FGLFANVALIINIGLIFGLLSMIG 437

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V+V++R+R+ +K   TS      I+    + L   +  
Sbjct: 438 GTLTLPGIAGIVLTVGMAVDANVLVFERIREELK---TSKGPARAIELGYEKALSAILDA 494

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   +++  ++ +    
Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVIWFERKRPKK 550


>gi|220922172|ref|YP_002497473.1| protein-export membrane protein SecD [Methylobacterium nodulans ORS
           2060]
 gi|219946778|gb|ACL57170.1| protein-export membrane protein SecD [Methylobacterium nodulans ORS
           2060]
          Length = 534

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 204/536 (38%), Positives = 306/536 (57%), Gaps = 14/536 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF----PSAM----PKNRISLGLDLRG 52
           +R +   ++    +  +GL +A+P+F        F    PS +    P   I LGLDL+G
Sbjct: 2   LRFSTSKIVGTLAVIIVGLALAIPSFFSPEQRKAFVASAPSWLTAIVPTRAIVLGLDLQG 61

Query: 53  GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI-GVFSMRQIQNKITLSFADSRFKENI 111
           GS +VLEVD  D      Q   D++R  L++EG+     ++     + L   D+  +   
Sbjct: 62  GSQIVLEVDRPDLQRTMAQQLRDDVRRALREEGVQADGGIQLTPRGVQLRIGDAANRAKA 121

Query: 112 ADKVTLFLQGVNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
             K+    Q V   +      +   L       I +  ++  I+  I  A+ Q++E++R+
Sbjct: 122 MPKLQALSQPVADAVLGQTGARTLELREEPNGSIQLAFTEAGINARIRRAVSQAIEVVRR 181

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
           R+D  G +E +IQ+ G+ RIL+Q+PG QDP RL + LG TAK+ F  +            
Sbjct: 182 RVDLGGTTEPSIQQQGADRILVQVPGLQDPQRLEEQLGKTAKLEFRMLAD---SPAGDVD 238

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
           +   RD+ G +  VE +V   G  L  A   FD KT++P+V+  F+  GA+RF + T +N
Sbjct: 239 MLPSRDAGGQKVPVERRVMADGADLTDAQPGFDQKTNEPIVNFKFNLRGAQRFGQATSEN 298

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +G+P+A+VLD  V++AP I Q I  G+ QISG FT++ A  L+ +LRAG+LP KLNI+E 
Sbjct: 299 VGRPMAIVLDNEVVSAPRILQPITGGQGQISGRFTVQQANDLSVLLRAGALPAKLNIIER 358

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG  LG DSI  G  A +A  +L+V  M   YG +GL A+ ++ ++V L L L+S+L 
Sbjct: 359 RTVGPGLGRDSIEAGKHATLAATLLVVTMMFACYGVFGLFANIALLVHVGLILGLMSVLE 418

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           AT+TLP IAGIVL IG AVDSN+L+ ER+REE R  +S+  +L  GF RA++TI DSN T
Sbjct: 419 ATMTLPGIAGIVLTIGTAVDSNVLIYERVREEVRAGRSIPSALQAGFDRAFATIVDSNST 478

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             IA ++LFF G G VRGFA+   L I+ ++ TA+++ R M+       + K + I
Sbjct: 479 MAIAAIILFFLGSGPVRGFAVVFILGIMTTVITAVTLTRMMIAVWYHRFRPKVLPI 534



 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 72/173 (41%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + R+ I  G    + + + ++  ++  +   F L A   L++ +   LG  ++    
Sbjct: 362 GPGLGRDSIEAGKHATLAATLLVVTMMFACYGV-FGLFANIALLVHVGLILGLMSVLEAT 420

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+R+R+ ++      S    +    +      V ++ 
Sbjct: 421 MTLPGIAGIVLTIGTAVDSNVLIYERVREEVRA---GRSIPSALQAGFDRAFATIVDSNS 477

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I+ + +   G   +  FA+    GI+    +++ +   ++   Y      
Sbjct: 478 TMAIAAIILFFLGSGPVRGFAVVFILGIMTTVITAVTLTRMMIAVWYHRFRPK 530


>gi|239995623|ref|ZP_04716147.1| Acriflavin resistance protein [Alteromonas macleodii ATCC 27126]
          Length = 589

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 216/600 (36%), Positives = 351/600 (58%), Gaps = 26/600 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M    +   +Y +I  +GLL A PN LPQS+  + P+    + +SLGLDL+GGSHL+L  
Sbjct: 1   MARFSFRGFVYVLIVMLGLLSAAPNILPQSIKQQLPTWYTTSTLSLGLDLQGGSHLLLAA 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-------QIQNKITLSFADSRFKENIAD 113
           D +      L  +S +L S L+ + +                  +  +   +     + D
Sbjct: 61  DTNALFEKQLNSFSSDLLSELRSQNVRYTKTSHSLTHKDSRSGSVVFTLRSADDARKVKD 120

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
                          +    L V   +  +++ L++   +Q++   + +S+E++R+R+++
Sbjct: 121 T------AYQISAQPNGSSALDVEIKQSTVTLTLNELYTEQLVKDTLSRSVEVVRKRLNE 174

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
            G++E ++   G   IL+Q+PG  DP+++++LLGTTA+M+FH    + S++     V   
Sbjct: 175 TGLTEPSVTLQGKDAILVQMPGMSDPTQVKKLLGTTAQMTFHWAANSQSEQ-----VMNK 229

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           +D+ GN Y +E KV + G H+  A      +  +PVV    D  GA++F  +TRDNIG+ 
Sbjct: 230 QDAAGNTYRLEQKVALEGEHITDAAGVLSSENGQPVVTFRLDSAGAKQFATMTRDNIGRV 289

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+VLD +V+TAPVIN  IP G+ +I+GNFT+  AG  A MLR G+LP+ L I+EER VG
Sbjct: 290 LAIVLDDKVVTAPVINSVIPGGRGEITGNFTLPEAGNTALMLRTGALPVPLTIIEERTVG 349

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
            DLGSD+I  G  + VAG +L++ FM+ +YG+WG +A F++ +N+ L    L+L GATLT
Sbjct: 350 PDLGSDAIQTGVESGVAGALLVLAFMVAIYGRWGAIASFALCINMALVFGALTLFGATLT 409

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAG++L +G+AVD+NIL+NERIREE++K +    ++++GF +A++TI DSN T LIA
Sbjct: 410 LPGIAGLILTMGMAVDANILINERIREESKKGRPAASAIEVGFDKAFATIVDSNFTTLIA 469

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             +LF FG G ++GFAIT+ L ++ S+FTA+++ + +M+ +++ K   + D         
Sbjct: 470 VSLLFMFGSGPIKGFAITIALGLVSSVFTAVALTKMLMLRVVKSKHKNTQDRAQQRVPLR 529

Query: 534 IPDC--------IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                         I F+  R   + +S++ ++ SI L    GL+YG+DF GG  + + A
Sbjct: 530 FSSPLLRLSDKLSGINFLAKRKIALAVSVVLTVLSIGLFAKPGLHYGVDFTGGTMIELTA 589



 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 78/175 (44%), Gaps = 10/175 (5%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           GP +  + I+ G+   +  A+ +L ++  I  +W     A   L +++    G   LFG 
Sbjct: 349 GPDLGSDAIQTGVESGVAGALLVLAFMVAIYGRW--GAIASFALCINMALVFGALTLFGA 406

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              L  +A ++  +G +V+  +++ +R+R+  K           I+   ++     V ++
Sbjct: 407 TLTLPGIAGLILTMGMAVDANILINERIREESK---KGRPAASAIEVGFDKAFATIVDSN 463

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               I+V  + ++G   I  FAI +A G+V    SS+F A  +   +     K+ 
Sbjct: 464 FTTLIAVSLLFMFGSGPIKGFAITIALGLV----SSVFTAVALTKMLMLRVVKSK 514


>gi|294155534|ref|YP_003559918.1| putative preprotein translocase, SecDF subunit [Mycoplasma
           crocodyli MP145]
 gi|291600248|gb|ADE19744.1| putative preprotein translocase, SecDF subunit [Mycoplasma
           crocodyli MP145]
          Length = 865

 Score =  240 bits (612), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 168/862 (19%), Positives = 340/862 (39%), Gaps = 70/862 (8%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV--DED 63
           W  I+   I  I  + A+  F     + + P+      I  G    GG  ++++V  D  
Sbjct: 13  WKRIVILSITLISSVFAIV-FGSVFYVAKNPN----RSIEYG----GGIEVLVQVKKDNQ 63

Query: 64  DFVNGFLQMYSDELRSF--LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +         S+ L           G     +   KI ++ + S   +    +    +  
Sbjct: 64  NADKTLTNKVSESLFERLTGGTGLTGTTVSSEGDGKIRITKSGSLN-DLQRREFESKV-- 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                     K +L  T      +  +          +        ++ I     + +  
Sbjct: 121 --------ADKPILTMTDLNINPLFKNGEFNPHGSLDSGN-----AKEWIPPFADNGAKY 167

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +  + +  + + +       T             S+K     V  +  +     
Sbjct: 168 MIDHQGKDSVSIDLKDNDAIAEWTKAT----------KFISEKHPGQNVILMWINIEELL 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +      +    +G         +   V    D        +    N+ K         
Sbjct: 218 TLAKTKFPTEWDASGHNLYNFVHVNNMAVQEVPDPTKENPNNKKRIRNVLKEAEFRAKDY 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +++   ++Q + +    +SGNFT   A  LA  +  G+    L+I+    V + L + + 
Sbjct: 278 LISEAAVSQPLNTKSVIVSGNFTQTEAKELANDINYGTSKYDLDILSSVYVDSALNTSAF 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A +    LI +FMIV YG  G ++  SI L + LTL + ++L    +  +IA ++
Sbjct: 338 KSAMLAGLIVFSLISIFMIVNYGLLGALSTISIALYIFLTLLMFTVLRGEYSPATIAALI 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +GIG++VD+NI+  ER++++     S+  S     S ++STI D+NIT LI    LF+FG
Sbjct: 398 IGIGISVDANIITFERLKKDLYSGSSLKKSFKNSNSLSFSTIIDANITTLIVAFTLFYFG 457

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD----- 536
              VRGF+I++ LSI+ ++   +   R     ++                 LI       
Sbjct: 458 TKDVRGFSISLILSIIFTLIVMLIFTRFTSSLLVNTGWFDKKLWLLGVHKKLIAKDNSNK 517

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLL---------FTHGLNYGIDFKGGIQLGVLAN 586
             +   +++   W   +S++  I SI +             G+   IDFKGG+ + +  +
Sbjct: 518 LYVRFDYVKQAKWFALVSLIIIIASIIVFVSIGLSKSNIWDGIVRNIDFKGGLNITIAGD 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI- 645
           +   +S+  S+ ES++   I        ++    +  Q  D+      L +   +     
Sbjct: 578 KEKFVSLSHSDAESIKNYIIQNAAAWKIEDVDSIISLQRVDNDHDNWALIIKSTQDLSDS 637

Query: 646 ----------VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
                        +      +V    ++ L+   ++ + I+ + +++Y  +R +W F++ 
Sbjct: 638 ILSIKKGLNENFNNITITNYVVSTTEAKRLLLNSLLAISIAFVGIVLYTLVRMRWTFSIS 697

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK-----NMKL 750
           AI  L+ D+   + F  L  ++ +   +AA+L+++G+S+ND +V +DR+R+       + 
Sbjct: 698 AIIGLLHDLLVVVAFIILARLQLSSIMIAAILSIVGFSINDTIVTFDRIREIIINNYHRK 757

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                + + + + +I+ET+ RS YT+     +++ +  +G +   SF I M FG+ +   
Sbjct: 758 VLEKATIKKIANTAISETIKRSFYTTATTMTALIILLAFGNATDFSFNIVMLFGMAIGVY 817

Query: 811 SSIFIAAPILLFIYDWRAKNAR 832
           SSIFI   I +F+ + R K  +
Sbjct: 818 SSIFICTRIWVFLENIRQKGIK 839


>gi|118580218|ref|YP_901468.1| preprotein translocase subunit SecD [Pelobacter propionicus DSM
           2379]
 gi|118502928|gb|ABK99410.1| protein-export membrane protein SecD [Pelobacter propionicus DSM
           2379]
          Length = 530

 Score =  239 bits (610), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 184/532 (34%), Positives = 287/532 (53%), Gaps = 20/532 (3%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           W + L  +   + LL   P  + Q     +   +PK++I LGLDL+GG+HLVLEVD    
Sbjct: 7   WRISLIVIFALVSLLYLTPTLVTQLP-SWWTGLLPKDKIHLGLDLQGGTHLVLEVDTQKA 65

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
           V G L + + +L   L  + +    + +   N++TL   +      +   +         
Sbjct: 66  VEGSLDIVATDLEDTLNNKNLHFKRISRTDWNRVTLLLYEKDTAAAVQKMLKDKY----- 120

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                 +  L        +++ ++          A+ Q++E IR RIDQ G+SE  IQR 
Sbjct: 121 --PGYQQSPLYDDGGFVALNLSITDEAAKDRKDKAVAQALETIRNRIDQFGVSEPVIQRE 178

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV-----------RFL 233
           G   I++QLPG +DP R   L+G TA++ F  V  +                        
Sbjct: 179 GVDHIVVQLPGIKDPQRAIDLIGKTARLEFKLVREDIPPGSISLPDDAEIMKEKEVDPDT 238

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                  Y+++ K  I+G  L  A    D + ++P V I F+ +G++ F +VT  N+GK 
Sbjct: 239 GAVSEVPYVLQKKAMITGDLLTDAQVRIDSQFNQPYVAIEFNSLGSKLFDQVTAANVGKR 298

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A+VLD  V +APVI + I  G AQISGNFT +TA  LA +LRAG+LP  + I++   VG
Sbjct: 299 FAIVLDNNVYSAPVIRERISGGSAQISGNFTEKTAADLAIVLRAGALPAPVKIIQNETVG 358

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG DSI KG  A + G++++V+FM + Y   G+VA+  + +NV+  +  L+ LGATLT
Sbjct: 359 PSLGQDSITKGLMAGLIGILVVVVFMGLYYKLSGMVANLGMVMNVLYLMGALAALGATLT 418

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IA IVL IG++VD+N+++ ERIREE R  +S   +LD G+ +A+ TI DS++T LI 
Sbjct: 419 LPGIAAIVLLIGMSVDANVIIFERIREELRLGKSPKSALDAGYDKAFLTIMDSHVTTLIT 478

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             VLF FG G V+GFA+++ L ++I++FT++   + +    +    +K + I
Sbjct: 479 AAVLFQFGTGPVKGFAVSLSLGVIINLFTSLIGTKVIFDLFLYRGTVKKMSI 530



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/181 (19%), Positives = 94/181 (51%), Gaps = 5/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E VGP + ++ I KG++  +I  + +++++ + +K    + A   +++++   +G  A
Sbjct: 353 QNETVGPSLGQDSITKGLMAGLIGILVVVVFMGLYYKLS-GMVANLGMVMNVLYLMGALA 411

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G    L  +AA++ LIG SV+  V++++R+R+ ++L     S +  +D   ++     
Sbjct: 412 ALGATLTLPGIAAIVLLIGMSVDANVIIFERIREELRL---GKSPKSALDAGYDKAFLTI 468

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + + +   I+   +  +G   +  FA+ ++ G+++   +S+ I   ++  ++ +R    +
Sbjct: 469 MDSHVTTLITAAVLFQFGTGPVKGFAVSLSLGVIINLFTSL-IGTKVIFDLFLYRGTVKK 527

Query: 833 I 833
           +
Sbjct: 528 M 528


>gi|209964363|ref|YP_002297278.1| preprotein translocase subunit SecD [Rhodospirillum centenum SW]
 gi|209957829|gb|ACI98465.1| protein-export membrane protein SecD, putative [Rhodospirillum
           centenum SW]
          Length = 522

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 215/514 (41%), Positives = 302/514 (58%), Gaps = 22/514 (4%)

Query: 21  IALPNFLPQSMLDRF----PSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE 76
            A PN L ++ +D +    P  +P   ++LGLDL+GGSHL+LEV  D  V   L    D 
Sbjct: 22  YAAPNVLGRAKVDSWASSLPGWLPTKTVNLGLDLQGGSHLLLEVKVDVVVQERLNALQDG 81

Query: 77  LRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLV 136
            R+ L+   IG   +  + N I  +  D    E     V      V S L        + 
Sbjct: 82  ARAALRDARIGYTDLGVVGNGIAFTLRDPADLETARSAVRN----VESDL-------SIR 130

Query: 137 TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196
           T     I   L+ + +  +   A+EQS+EI+R+RID+ G  E TIQR G  RIL+QLPG 
Sbjct: 131 TDEGNRIVASLTDSTVQGLRRAAVEQSIEIVRRRIDETGTREPTIQRQGEDRILVQLPGV 190

Query: 197 QDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISG 251
            DP R+++LLG TAK++F  V  + S           G   L   DG   +V  +V + G
Sbjct: 191 DDPERVKRLLGQTAKLTFRLVDDDISPADAQAGRIPPGSELLPSRDGGVEVVRKRVMVDG 250

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             L  +  +F     +PVV   FD +GARRF E T  N+ K  A+VLD +V++AP I + 
Sbjct: 251 STLVDSQPSFQDG--QPVVSFRFDSLGARRFGEATSANVEKRFAIVLDNQVISAPRIQEP 308

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           I  G   I G+FT+ETA  L+ +LRAG+LP  L ++EER VG  LG+DSI  G  A +AG
Sbjct: 309 ILGGSGIIRGSFTVETANDLSLLLRAGALPAPLTVLEERTVGPGLGADSIEAGRIASIAG 368

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           LV++V FM + YG +GL A+ ++  N+ L  A LS+L ATLTLP IAGIVL IG+AVD+N
Sbjct: 369 LVMVVAFMALCYGLFGLFANLALVFNIALIFAALSILQATLTLPGIAGIVLTIGMAVDAN 428

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIREE R  ++   ++D G++RA +TI DSN+T LIA ++LF FG G V+GFA+T
Sbjct: 429 VLIFERIREELRFGRTPIAAIDAGYNRALTTIIDSNLTTLIAALLLFMFGSGPVKGFAVT 488

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + + IL SMFTAI + R M++  +R  + K++ I
Sbjct: 489 LSIGILASMFTAIMVTRLMVVVWLRRTRPKTVPI 522



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 78/173 (45%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I  G +  I   + ++ ++ + +   F L A   L+ +I       ++    
Sbjct: 350 GPGLGADSIEAGRIASIAGLVMVVAFMALCYGL-FGLFANLALVFNIALIFAALSILQAT 408

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++++R+R+ ++      +    ID   N  L   + +++
Sbjct: 409 LTLPGIAGIVLTIGMAVDANVLIFERIREELRF---GRTPIAAIDAGYNRALTTIIDSNL 465

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I+ L + ++G   +  FA+ ++ GI+ +  ++I +   +++         
Sbjct: 466 TTLIAALLLFMFGSGPVKGFAVTLSIGILASMFTAIMVTRLMVVVWLRRTRPK 518


>gi|126732591|ref|ZP_01748388.1| protein-export membrane protein SecD [Sagittula stellata E-37]
 gi|126706875|gb|EBA05944.1| protein-export membrane protein SecD [Sagittula stellata E-37]
          Length = 555

 Score =  239 bits (609), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 196/549 (35%), Positives = 297/549 (54%), Gaps = 33/549 (6%)

Query: 6   WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43
           W   L  +   +GLL+ALPN                         ++    +PS +P   
Sbjct: 7   WKRWLIWLTVVVGLLLALPNLFYGRVEIHNDAVKAIEAGDDTSENRAAEAEWPSFLPSGL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-----QIQNKI 98
           ++LGLDLRGG+HL+  V   D     ++    E+R  L+ E   V ++R       + ++
Sbjct: 67  VNLGLDLRGGAHLLARVQTADVYKARMESLWPEVRDLLRDERDTVGTIRWNSEAVDRGEL 126

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
            +  +     +   + V    Q V +         L+      E+ + LS+         
Sbjct: 127 RVRLSKPEGMQRAIEVVRGLAQPVVTLTGAGASDILV-RGEGDELVVTLSEAEKQATDDR 185

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV- 217
            ++QS+EIIR+RID++G  E TIQR G+ RILIQ+PG    + L+ ++GTTA+++F  V 
Sbjct: 186 TLQQSLEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSAAELKAIIGTTAQLTFQPVV 245

Query: 218 ---LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
                 N   G    +    D  G  Y++E    ++G  L  A   FD    +P V  +F
Sbjct: 246 GRTTNENDAPGPGNELLPSLDEKGLYYVLEQTPVVTGEELTNAQPTFDQNG-RPAVSFNF 304

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
           +  GAR+F + T  NIG P A+VLD  V++APVI   I  G   I+GNFT+E +  LA +
Sbjct: 305 NPSGARKFGDYTAANIGSPFAIVLDDEVISAPVIQSHIGGGAGIITGNFTVEESTNLAVL 364

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           LRAG+LP  L  +EER +G +LG DSI  G  A     V ++ FM+  YG +G+ A+ ++
Sbjct: 365 LRAGALPAGLEFLEERTIGPELGQDSIEAGKLATGVAFVAVLGFMVASYGLFGVFANIAL 424

Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
            LNV L   LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++++
Sbjct: 425 ILNVALMFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKTARGPARAIEL 484

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G+ +A S I D+NIT  I  V+L+  G G VRGFA+T+G  I+ S+FTAI + R +++  
Sbjct: 485 GYEKALSAIVDANITTFITAVILYVMGSGPVRGFAVTLGFGIITSVFTAIFVTRLLIVTW 544

Query: 515 IRYKKMKSI 523
              ++ K+I
Sbjct: 545 FERRRPKTI 553



 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +   ++ +A+L ++   +   F + A   LIL++    G  +L G
Sbjct: 381 TIGPELGQDSIEAGKLATGVAFVAVLGFMVASYGL-FGVFANIALILNVALMFGLLSLIG 439

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K   T+      I+    + L   V  
Sbjct: 440 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---TARGPARAIELGYEKALSAIVDA 496

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + + V G   +  FA+ + FGI+ +  ++IF+   +++  ++ R   
Sbjct: 497 NITTFITAVILYVMGSGPVRGFAVTLGFGIITSVFTAIFVTRLLIVTWFERRRPK 551


>gi|27363910|ref|NP_759438.1| preprotein translocase subunit SecF [Vibrio vulnificus CMCP6]
 gi|37678933|ref|NP_933542.1| preprotein translocase subunit SecF [Vibrio vulnificus YJ016]
 gi|320157291|ref|YP_004189670.1| protein-export membrane protein SecF [Vibrio vulnificus MO6-24/O]
 gi|27360027|gb|AAO08965.1| protein-export membrane protein SecF [Vibrio vulnificus CMCP6]
 gi|37197675|dbj|BAC93513.1| preprotein translocase subunit SecF [Vibrio vulnificus YJ016]
 gi|319932603|gb|ADV87467.1| protein-export membrane protein SecF [Vibrio vulnificus MO6-24/O]
          Length = 315

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 165/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR   +    S+L    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAEKTIDFMRWSKFAFVFSLLMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +RS LE+   GD + QNF   ++ +VRL+ +  D   +T   +++           
Sbjct: 61  NLEEIRSALEAKGFGDATVQNFGSARDVMVRLRPRE-DMAGETLGNQILSAIKEGTGKSV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSMRFEWRLAAGAVMALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         ++++ SI +TL
Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-AEIMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + V GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297


>gi|301063414|ref|ZP_07203950.1| export membrane protein SecD [delta proteobacterium NaphS2]
 gi|300442487|gb|EFK06716.1| export membrane protein SecD [delta proteobacterium NaphS2]
          Length = 533

 Score =  239 bits (608), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 194/539 (35%), Positives = 308/539 (57%), Gaps = 23/539 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++  W  ++  +   + L   +P+         + S +PK++I LGLDL+GG HLVLEV+
Sbjct: 3   KSLTWRSVIALLAILVALSYLVPSITGTVP-AWWSSFLPKDKIHLGLDLQGGMHLVLEVE 61

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               + G L+   DE++  L+++ I   SM+++    + +    S+ +    D V     
Sbjct: 62  ASKAIEGHLERVVDEMKGDLREDKIRYVSMKRVGLKGVEIVLMRSKDETLFRDMV----- 116

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +       +++     +    +VL +    +++  A+EQ++E IR R+DQ G+SE  
Sbjct: 117 --AANYPDFSIESMPEQNGKPVFEMVLDEKARIRIMKMAVEQALETIRNRVDQFGVSEPD 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--- 237
           I+    HR+LIQLPG +DP R   L+G TA + F  V   +S +  + G     D     
Sbjct: 175 IRPQEDHRLLIQLPGIKDPKRAVALIGKTALLEFKLVDEEHSVQEALKGNVPPGDEILYQ 234

Query: 238 -----------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                         YL++ +  ++G +L  A    D + ++P V ISFD  GAR F +VT
Sbjct: 235 VSVDPDTGHERKTPYLLKKRTALTGEYLTDARVQIDSRYNEPYVSISFDARGARLFEQVT 294

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
             N+ K LA+VLD +V +APVI   I  GKAQI+G +T + A  LA +LRAG+LP  + I
Sbjct: 295 GQNVKKRLAIVLDNKVNSAPVIQDKISGGKAQITGRYTTDEARDLAIVLRAGALPAPVKI 354

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +EER VG  LG DSI KG  +++ G +++++FM V YG  G +AD ++ LN++  +A L+
Sbjct: 355 IEERTVGPSLGKDSIQKGFKSMLIGGIIVIIFMAVYYGLSGAIADLALLLNILFIMAGLA 414

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
              ATLTLP IAGI+L IG++VD+N+L+ ERIREE R  ++   +++ G+S+A  TI D+
Sbjct: 415 FFSATLTLPGIAGIILTIGMSVDANVLIFERIREEVRLGKTARTAIEGGYSKALVTILDA 474

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            +T LI  +VLF FG GAVRGFA+T+ + I+ S+FTAI + R +  +    + +K + I
Sbjct: 475 QLTTLIVALVLFQFGTGAVRGFAVTLSIGIVASLFTAIFVTRIIFDYFYVKRNVKKLSI 533



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 41/174 (23%), Positives = 86/174 (49%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+KG   ++I  I ++I++ + +    A+ A   L+L+I   +   A F   
Sbjct: 361 GPSLGKDSIQKGFKSMLIGGIIVIIFMAVYYGLSGAI-ADLALLLNILFIMAGLAFFSAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG SV+  V++++R+R+ ++L     + R  I+   ++ L   +   +
Sbjct: 420 LTLPGIAGIILTIGMSVDANVLIFERIREEVRL---GKTARTAIEGGYSKALVTILDAQL 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I  L +  +G   +  FA+ ++ GIV +  ++IF+   I  + Y  R    
Sbjct: 477 TTLIVALVLFQFGTGAVRGFAVTLSIGIVASLFTAIFVTRIIFDYFYVKRNVKK 530


>gi|254462860|ref|ZP_05076276.1| protein-export membrane protein SecD [Rhodobacterales bacterium
           HTCC2083]
 gi|206679449|gb|EDZ43936.1| protein-export membrane protein SecD [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 553

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 198/547 (36%), Positives = 306/547 (55%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSM----------------------LDRFPSAMPKNR 43
           W  ++   +C +GLL+ALPN     +                        ++P  +P   
Sbjct: 7   WKRVVIWAVCALGLLLALPNAFYSKVEQRNDALAAIEVSGNSAERDAMAAQWPGYLPSGL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI---QNKITL 100
           ++LGLDLRGG+HL+ EV   D  +  ++ +  E+R  L+ E   + ++R      +++ +
Sbjct: 67  VNLGLDLRGGAHLLAEVKVQDVYSARMKAFWPEVRDALRPERATIGTIRLQPSAGDQLKV 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +         + V    Q V S   V      +  + +  ++I LS+          +
Sbjct: 127 RISKPEGTARALEVVRGLAQQVVSLSGVGASDIEVN-SDDGVLTIRLSEAEKRATDERTM 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217
           +QS+EIIR+RID++G  E TIQR G+ RILIQ+PG    + L+ ++GTTA+++F  V   
Sbjct: 186 QQSLEIIRRRIDEVGTREPTIQRQGTDRILIQVPGIGSAAELKAIIGTTAQLTFQPVVGR 245

Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
               ++  G    +    D +G  Y +E    ++G  L  A   FD    +P V+  F+ 
Sbjct: 246 GTDPDASAGLGNEIVPSLDEEGAFYTLESAPVVTGEELVDAQPAFDQNG-RPAVNFRFNP 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR+F + T +NIG P A+VLD  V++APVI   IP G   I+GNFT+E +  LA +LR
Sbjct: 305 TGARKFGDYTAENIGSPFAIVLDSEVISAPVIQSHIPGGSGIITGNFTVEESTNLAVLLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L  +EER +G +LG+DSI  G  A +     +++FM + YG +G+ A+ ++ +
Sbjct: 365 AGALPAGLEFLEERTIGPELGADSIKAGQVACIVAFAAVLIFMFLSYGTFGIFANIALII 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           NV L   LLS++GATLTLP IAGIVL IG+AVD+N+LV ERIREE + ++    ++D+G+
Sbjct: 425 NVGLIFGLLSMVGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKSSKGPARAIDLGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            +A S I D+N T  I  V+LF  G G VRGFAIT+G  IL S+FTAI + R +++    
Sbjct: 485 EKALSAIIDANFTTFITAVILFVMGSGPVRGFAITLGFGILTSVFTAIFVTRLIVVMWFE 544

Query: 517 YKKMKSI 523
            K  K++
Sbjct: 545 RKHPKTL 551



 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 42/175 (24%), Positives = 91/175 (52%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++  + I+ G V  I++  A+LI++++ +   F + A   LI+++    G  ++ G
Sbjct: 379 TIGPELGADSIKAGQVACIVAFAAVLIFMFLSYG-TFGIFANIALIINVGLIFGLLSMVG 437

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V+V++R+R+ +K   +S      ID    + L   +  
Sbjct: 438 ATLTLPGIAGIVLTIGMAVDANVLVFERIREELK---SSKGPARAIDLGYEKALSAIIDA 494

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +   FI+ + + V G   +  FAI + FGI+ +  ++IF+   I++  ++ +   
Sbjct: 495 NFTTFITAVILFVMGSGPVRGFAITLGFGILTSVFTAIFVTRLIVVMWFERKHPK 549


>gi|330814106|ref|YP_004358345.1| protein-export membrane protein SecF [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487201|gb|AEA81606.1| protein-export membrane protein SecF [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 301

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 99/292 (33%), Positives = 174/292 (59%), Gaps = 4/292 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 F++ +   + +S +    S+   FT GLN G+DFKGG  + +   +P +   +R
Sbjct: 4   YNKKYNFLKFKKPFLILSTILFAISLGAFFTKGLNLGVDFKGGTVIEMKLAQPYNSEDIR 63

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +L  + +GD+  + F   + FL  ++ +  D+     + + ++  +         +  E
Sbjct: 64  KSLLKINLGDVVVKEFGSSREFLATIEKKGKDNDFVGSIKKHLESDLAREFDF---RRVE 120

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
           +VG KIS+EL + G+  V+++   MLIYIWIRF+W F+LG+I  LI D+  T+G F+L G
Sbjct: 121 VVGSKISKELTKSGLYSVVLALFLMLIYIWIRFEWQFSLGSILALIHDVVITIGAFSLVG 180

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            EFNL+ VAA+LT++GYS+ND VV+YDR+R+ +         ++LI+ ++N TL R++ T
Sbjct: 181 FEFNLSIVAAILTIVGYSMNDTVVIYDRIREFL-KIDDRQDIQELINDAVNSTLPRTLKT 239

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           S+   ++++ + V+GG ++  F+  + +G+++   SSIF+AAPIL+F    R
Sbjct: 240 SVTTLLALVSIYVFGGEILKGFSFALIWGVLIGTYSSIFVAAPILVFFKVKR 291


>gi|312601215|gb|ADQ90470.1| Protein-export membrane protein secD [Mycoplasma hyopneumoniae 168]
          Length = 865

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 150/869 (17%), Positives = 311/869 (35%), Gaps = 86/869 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---D 61
            + +   +       +  + NF                 I+  ++  GG+ ++++V   D
Sbjct: 18  RFFLAFLTFALLGSGIFLVSNFY------------ISKNINRSIEYGGGAEVLVQVKTLD 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM--RQIQNKITLSFADSRFKENIADKVTLFL 119
                +  ++     +   L        +    + + +I +S         +   +   +
Sbjct: 66  GKIPSSKVVKEADAAIFQRLTGGANLSGTSVFTEGEGRIRISRNKISNNRELDTFIQEIV 125

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                       K +L  T      +         +    ++Q  E         G +  
Sbjct: 126 N-----------KPVLTITDVDTNPLFFEGKFDKNLK---LDQGNETNWIVPFAPGSA-- 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                  +             + ++     +K + +     + K   +     +      
Sbjct: 170 ---ISQPNPQNPANNQVLIELKDKKAQLEWSKATEYISKLGHGKNRILIWSNIVELKKIA 226

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           +     +   SG ++       +  T +                        K       
Sbjct: 227 KEKFPAQWAKSGENIYNFVHVGEKTTPEF------------LQGNKILQPELKKYQFDAK 274

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +++   ++QA+      I+G FT + A  LA  +  G+   KL+ +    V       
Sbjct: 275 KYLISDATVSQALNGKSFVITGRFTPQEAKQLALDINYGTADYKLDFLSASFVSKTKSDS 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
               G  AI   + +I LF+++ YG  G +A  S+ L V LTL   +++    +  +I+ 
Sbjct: 335 VFIAGWIAIGLAIAIISLFLLINYGLLGALATISLSLYVFLTLLFFTIVRGEYSPITISA 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +V+GIG+ +D+N++  E  +       SV  +       +++ I DSNIT LIA +VLFF
Sbjct: 395 LVVGIGMNIDANVISFEVFKSRIYSGNSVLKANYQANRLSFNAILDSNITTLIAALVLFF 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAM----------------MIFIIRYKKMKSI 523
           FG   V+ F+IT+  SI+ ++   I   +                  +  +   K     
Sbjct: 455 FGTKNVKSFSITLIFSIIFTLIVTIGFTKFFTSFILKANFFQNNEKKLWLLGIKKYYLRK 514

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID----FKGGI 579
                +  +   D   I         +       + ++          G +    F GG 
Sbjct: 515 YQRGYNSIYSQIDYEKIYKYTRWLPLILFLGSIIVFAVFAGIYRSFGSGFNLAIDFSGGT 574

Query: 580 QLGVLANRPV-------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
              + ++              + S L+S  I   +        N    +      +    
Sbjct: 575 NFLIESSNSSYDLITKEKAEKIISFLDSQNINKSNSTILLNPLNENGNIFNLEIKTKLDL 634

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                      +    +       +  + +++LI   I+ V I+ I + I+  IRFKW F
Sbjct: 635 ATKIASLNTAIQNNFSNIRMTNYSISNEEAQKLIFNAILSVGIALIFVTIFTLIRFKWTF 694

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR------- 745
           +L  I +L+ ++   L    +  IE +   V A+LTLIGY+VND +VV+DR++       
Sbjct: 695 SLAIIFSLLFNVLMVLLAIIITRIEISQNLVVAILTLIGYTVNDTIVVFDRVKGRFSEIN 754

Query: 746 -KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +N+  +      +++  ++I ET  RSVYTS+   ++++ + ++  S+   F++ M  G
Sbjct: 755 HENVYKFDK---IKEISLQAIRETAKRSVYTSLTTILTIVVLMIFYESIDIVFSLTMLIG 811

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +++   SS+FIA  I + +  +R +   +
Sbjct: 812 VIIGTYSSLFIATRIWIILESYRNRKKEM 840


>gi|54020361|ref|YP_115653.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma
           hyopneumoniae 232]
 gi|53987534|gb|AAV27735.1| protein-export membrane protein secD [Mycoplasma hyopneumoniae 232]
          Length = 865

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 150/869 (17%), Positives = 311/869 (35%), Gaps = 86/869 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---D 61
            + +   +       +  + NF                 I+  ++  GG+ ++++V   D
Sbjct: 18  RFFLAFLTFALLGSGIFLVSNFY------------ISKNINRSIEYGGGAEVLVQVKTLD 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM--RQIQNKITLSFADSRFKENIADKVTLFL 119
                +  ++     +   L        +    + + +I +S         +   +   +
Sbjct: 66  GKIPSSKVVKEADAAIFQRLTGGANLSGTSVFTEGEGRIRISRNKISNNRELDTFIQEIV 125

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                       K +L  T      +         +    ++Q  E         G +  
Sbjct: 126 N-----------KPVLTITDVDTNPLFFEGKFDKNLK---LDQGNETNWIVPFAPGSA-- 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                  +             + ++     +K + +     + K   +     +      
Sbjct: 170 ---ISQPNPQNPANNQVLIELKDKKAQLEWSKATEYISKLGHGKNRILIWSNIVELKKIA 226

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           +     +   SG ++       +  T +                        K       
Sbjct: 227 KEKFPAQWAKSGENIYNFVHVGEKTTPEF------------LQGNKILQPELKKYQFDAK 274

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +++   ++QA+      I+G FT + A  LA  +  G+   KL+ +    V       
Sbjct: 275 KYLISDATVSQALNGKSFVITGRFTPQEAKQLALDINYGTADYKLDFLSASFVSKTKSDS 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
               G  AI   + +I LF+++ YG  G +A  S+ L V LTL   +++    +  +I+ 
Sbjct: 335 VFIAGWIAIGLAIAIISLFLLINYGLLGALATISLSLYVFLTLLFFTIVRGEYSPITISA 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +V+GIG+ +D+N++  E  +       SV  +       +++ I DSNIT LIA +VLFF
Sbjct: 395 LVVGIGMNIDANVISFEVFKSRIYSGNSVLKANYQANRLSFNAILDSNITTLIAALVLFF 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAM----------------MIFIIRYKKMKSI 523
           FG   V+ F+IT+  SI+ ++   I   +                  +  +   K     
Sbjct: 455 FGTKNVKSFSITLIFSIIFTLIVTIGFTKFFTSFILKANFFQNNEKKLWLLGIKKYYLRK 514

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID----FKGGI 579
                +  +   D   I         +       + ++          G +    F GG 
Sbjct: 515 YQRGYNSIYSQIDYEKIYKYTRWLPLILFLGSIIVFAVFAGIYRSFGSGFNLAIDFSGGT 574

Query: 580 QLGVLANRPV-------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
              + ++              + S L+S  I   +        N    +      +    
Sbjct: 575 NFLIESSNSSYDLITKEKAEKIISFLDSQNINKSNSTILLNPLNENGNIFNLEIKTKLDL 634

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                      +    +       +  + +++LI   I+ V I+ I + I+  IRFKW F
Sbjct: 635 ATKIASLNAAIQNNFSNIRMTNYSISNEEAQKLIFNAILSVGIALIFVTIFTLIRFKWTF 694

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR------- 745
           +L  I +L+ ++   L    +  IE +   V A+LTLIGY+VND +VV+DR++       
Sbjct: 695 SLAIIFSLLFNVLMVLLAIIITRIEISQNLVVAILTLIGYTVNDTIVVFDRVKARFSEIN 754

Query: 746 -KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +N+  +      +++  ++I ET  RSVYTS+   ++++ + ++  S+   F++ M  G
Sbjct: 755 HENVYKFDK---IKEISLQAIRETAKRSVYTSLTTILTIVVLMIFYESIDIVFSLTMLIG 811

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +++   SS+FIA  I + +  +R +   +
Sbjct: 812 VIIGTYSSLFIATRIWIILESYRNRKKEM 840


>gi|329889963|ref|ZP_08268306.1| protein-export membrane protein SecD [Brevundimonas diminuta ATCC
           11568]
 gi|328845264|gb|EGF94828.1| protein-export membrane protein SecD [Brevundimonas diminuta ATCC
           11568]
          Length = 532

 Score =  238 bits (607), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 179/529 (33%), Positives = 303/529 (57%), Gaps = 10/529 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W + L ++   +GL +A P+ L  +  +  PS +P N ++LGLDL+GGS+L+LEVD  
Sbjct: 5   SRWKITLVALSLVLGLFLAYPSVLSPAQREALPSWLPSNGLNLGLDLQGGSYLLLEVDVP 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           +     +    +++R  L+++ + +  M++    + ++ A+    +   + +    Q   
Sbjct: 65  EMRTKRISNLMEDVRVSLREDQVNIMGMQREAGGVVVTVAEGAAYDTAFNTLRTMAQQ-- 122

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                     +        I    +   +  + + A++QS+E++R+R+D  G  E  I R
Sbjct: 123 GVGPTGQPDRVATKLGGGRIRYAFTDAALASMGATAVDQSIEVVRRRLDSSGTKEIAITR 182

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL------PNNSKKGFMFGVRFLRDSD 237
            G+ RI+IQ PG+ DP+ L +L+G TA+++F  V        +            L D  
Sbjct: 183 QGADRIVIQAPGQSDPAELERLVGRTAQLTFQMVDTSPTGLNDALAGRVPPDAELLVDDL 242

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G  YLV+ ++ +SG +L         + ++P +D  FD  G+RRF E T  N+GKP A++
Sbjct: 243 GTPYLVKRRILVSGENLTR-AGVGADQNNRPAIDFQFDSQGSRRFGEATAQNLGKPFAII 301

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDG+V++AP I  AI  G+ QI+GNFTI +A  L  +L  G+LP  L + E R V A+LG
Sbjct: 302 LDGKVISAPTIQSAITGGRGQITGNFTIASASELVNLLNGGALPAPLKVEERRVVTAELG 361

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           +D++  G  +   G  +IV+FMI+ YG  +G ++   + LN IL +A +SL  ATLTLP 
Sbjct: 362 ADAVAAGALSTALGFAVIVIFMILAYGFLFGGISVIGLILNGILIVAAMSLTQATLTLPG 421

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG++L   +AVD+N+L+ ER+R+E R+ +SV  S+D GF+RA  TI D+N+T L+A ++
Sbjct: 422 IAGLILTFAVAVDANVLIYERMRDEARQGRSVVASMDAGFNRAMGTIIDANLTTLVAALI 481

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +F FG G VRGFA T+ + +  S+F+++   + ++ + ++  K K + I
Sbjct: 482 MFMFGAGPVRGFAWTLTIGVFTSVFSSVLTAQVLLGYWLKIAKPKKLPI 530



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 72/173 (41%), Gaps = 3/173 (1%)

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
            ++  + +  G +   +    ++I++ + + + F   ++  LIL+    +   +L     
Sbjct: 358 AELGADAVAAGALSTALGFAVIVIFMILAYGFLFGGISVIGLILNGILIVAAMSLTQATL 417

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            L  +A ++     +V+  V++Y+RMR   +      S    +D   N  +G  +  ++ 
Sbjct: 418 TLPGIAGLILTFAVAVDANVLIYERMRDEARQ---GRSVVASMDAGFNRAMGTIIDANLT 474

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             ++ L M ++G   +  FA  +  G+  +  SS+  A  +L +         
Sbjct: 475 TLVAALIMFMFGAGPVRGFAWTLTIGVFTSVFSSVLTAQVLLGYWLKIAKPKK 527


>gi|224369815|ref|YP_002603979.1| SecD [Desulfobacterium autotrophicum HRM2]
 gi|223692532|gb|ACN15815.1| SecD [Desulfobacterium autotrophicum HRM2]
          Length = 525

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 195/540 (36%), Positives = 288/540 (53%), Gaps = 30/540 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   W   L + I  I L+  LP           P   P  +I+LGLDL+GG +LVLEV
Sbjct: 1   MKILTWRGTLITSILAIALVYLLPTVC--------PDCWPHKKINLGLDLQGGMNLVLEV 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI-QNKITLSFADSRFKENIADKVTLFL 119
             +  V   L+    EL+  L+   +    +     N IT   +     +     ++   
Sbjct: 53  QSEKAVETTLERTIHELKKELRDGDVKHSGISLNAGNTITAVLSGKENIDGFNKILSENF 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +                    + + L     + +   A EQ++E IR RID+ G+SE 
Sbjct: 113 NTLMINSTQ-------KQGEATTMVLKLPDKEQESIRKMATEQALETIRNRIDEFGVSEP 165

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD-- 237
            I+  G +RIL+QLPG  D  R + L+G TA+++F  V         + G     DS   
Sbjct: 166 DIRIQGENRILVQLPGVTDTQRAKDLIGRTARLNFQLVDETGDVASALKGTPPPGDSILY 225

Query: 238 ------------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                          +L++++V + G  L  A    D + ++P V I FD  GAR F  +
Sbjct: 226 QVKTNPQTGQTIKTPFLIKNRVLLDGSSLTDARVMIDSQYNEPYVGIEFDRKGARLFERI 285

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T +NI K LA+VLD  V +APVI   I  GKA+I+GNFT E A  LA  LRAG+LP  + 
Sbjct: 286 TGENIKKRLAIVLDKTVYSAPVIQDRIAGGKARITGNFTTEEARDLAIALRAGALPAPVK 345

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           I+EER VG  LG+DSI  G  +++ G +L+++FM + Y   GL+ADF++ +N+IL    L
Sbjct: 346 ILEERTVGPTLGADSIRMGIVSMIVGGLLVIIFMAIYYKGSGLIADFALIMNIILIGGGL 405

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           +   ATLTLP IAGI+L IG+AVD+N+++ ERIREE    ++   S+  GF RA  T+ D
Sbjct: 406 AAFQATLTLPGIAGIILTIGMAVDANVIIFERIREELFSGKTPAASVKAGFERATLTVLD 465

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +N+T LI  VVLF FG G ++GFA+T+GL I+ S+FTA+ + ++   F I  KK+ ++ I
Sbjct: 466 ANVTTLIVAVVLFQFGTGPIKGFAVTLGLGIVASLFTALVLSKSCFDFFISGKKVSTLSI 525



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 76/159 (47%), Gaps = 4/159 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR GIV +I+  + ++I++ I +K    L A   LI++I    G  A F   
Sbjct: 353 GPTLGADSIRMGIVSMIVGGLLVIIFMAIYYK-GSGLIADFALIMNIILIGGGLAAFQAT 411

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++++R+R+ +    +  +    +           +  ++
Sbjct: 412 LTLPGIAGIILTIGMAVDANVIIFERIREELF---SGKTPAASVKAGFERATLTVLDANV 468

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              I  + +  +G   I  FA+ +  GIV +  +++ ++
Sbjct: 469 TTLIVAVVLFQFGTGPIKGFAVTLGLGIVASLFTALVLS 507


>gi|71893589|ref|YP_279035.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma
           hyopneumoniae J]
 gi|71851716|gb|AAZ44324.1| protein-export membrane protein [Mycoplasma hyopneumoniae J]
          Length = 865

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 150/869 (17%), Positives = 311/869 (35%), Gaps = 86/869 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---D 61
            + +   +       +  + NF                 I+  ++  GG+ ++++V   D
Sbjct: 18  RFFLAFLTFALLGSGIFLVSNFY------------ISKNINRSIEYGGGAEVLVQVKTLD 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM--RQIQNKITLSFADSRFKENIADKVTLFL 119
                +  ++     +   L        +    + + +I +S         +   +   +
Sbjct: 66  GKIPSSKVVKEADAAIFQRLTGGANLSGTSVFTEGEGRIRISRNKISNNRELDTFIQEIV 125

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                       K +L  T      +         +    ++Q  E         G +  
Sbjct: 126 N-----------KPVLTITDVDTNPLFFEGKFDKNLK---LDQGNETNWIVPFAPGSA-- 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                  +             + ++     +K + +     + K   +     +      
Sbjct: 170 ---ISQPNPQNPANNQVLIELKDKKAQLEWSKATEYISKLGHGKNRILIWSNIVELKKIA 226

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           +     +   SG ++       +  T +                        K       
Sbjct: 227 KEKFPAQWAKSGENIYNFVHVGEKTTPEF------------LQGNKILQPELKKYQFDAK 274

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +++   ++QA+      I+G FT + A  LA  +  G+   KL+ +    V       
Sbjct: 275 KYLISDATVSQALNGKSFVITGRFTPQEAKQLALDINYGTADYKLDFLSASFVSKTKSDS 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
               G  AI   + +I LF+++ YG  G +A  S+ L V LTL   +++    +  +I+ 
Sbjct: 335 VFIAGWIAIGLAIAIISLFLLINYGLLGALATISLSLYVFLTLLFFTIVRGEYSPITISA 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +V+GIG+ +D+N++  E  +       SV  +       +++ I DSNIT LIA +VLFF
Sbjct: 395 LVVGIGMNIDANVISFEVFKSRIYSGNSVLKANYQANRLSFNAILDSNITTLIAALVLFF 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAM----------------MIFIIRYKKMKSI 523
           FG   V+ F+IT+  SI+ ++   I   +                  +  +   K     
Sbjct: 455 FGTKNVKSFSITLIFSIIFTLIVTIGFTKFFTSFILKANFFQNNEKKLWLLGIKKYYLRK 514

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID----FKGGI 579
                +  +   D   I         +       + ++          G +    F GG 
Sbjct: 515 YQRGYNSIYSQIDYEKIYKYTRWLPLILFLGSIIVFAVFAGIYRSFGSGFNLAIDFSGGT 574

Query: 580 QLGVLANRPV-------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
              + ++              + S L+S  I   +        N    +      +    
Sbjct: 575 NFLIESSNSSYDLITKEKAEKIISFLDSQNINKSNSTILLNPLNENGNIFNLEIKTKLDL 634

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                      +    +       +  + +++LI   I+ V I+ I + I+  IRFKW F
Sbjct: 635 ATKIASLNTAIQNNFSNIRMTNYSISNEEAQKLIFNAILSVGIALIFVTIFTLIRFKWTF 694

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR------- 745
           +L  I +L+ ++   L    +  IE +   V A+LTLIGY+VND +VV+DR++       
Sbjct: 695 SLAIIFSLLFNVLMVLLAIIITRIEISQNLVVAILTLIGYTVNDTIVVFDRVKARFSEIN 754

Query: 746 -KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +N+  +      +++  ++I ET  RSVYTS+   ++++ + ++  S+   F++ M  G
Sbjct: 755 HENVYKFDK---IKEISLQAIRETAKRSVYTSLTTILTIVVLMIFYESIDIVFSLTMLIG 811

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +++   SS+FIA  I + +  +R +   +
Sbjct: 812 VIIGTYSSLFIATRIWIILESYRNRKKEM 840


>gi|72080580|ref|YP_287638.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma
           hyopneumoniae 7448]
 gi|71913704|gb|AAZ53615.1| protein-export membrane protein [Mycoplasma hyopneumoniae 7448]
          Length = 865

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 150/869 (17%), Positives = 311/869 (35%), Gaps = 86/869 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---D 61
            + +   +       +  + NF                 I+  ++  GG+ ++++V   D
Sbjct: 18  RFFLAFLTFTLLGSGIFLVSNFY------------ISKNINRSIEYGGGAEVLVQVKTLD 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM--RQIQNKITLSFADSRFKENIADKVTLFL 119
                +  ++     +   L        +    + + +I +S         +   +   +
Sbjct: 66  GKIPSSKVVKEADAAIFQRLTGGANLSGTSVFTEGEGRIRISRNKISNNRELDTFIQEIV 125

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                       K +L  T      +         +    ++Q  E         G +  
Sbjct: 126 N-----------KPVLTITDVDTNPLFFEGKFDKNLK---LDQGNETNWIVPFAPGSA-- 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                  +             + ++     +K + +     + K   +     +      
Sbjct: 170 ---ISQPNPQNPANNQVLIELKDKKAQLEWSKATEYISKLGHGKNRILIWSNIVELKKIA 226

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           +     +   SG ++       +  T +                        K       
Sbjct: 227 KEKFPAQWAKSGENIYNFVHVGEKTTPEF------------LQGNKILQPELKKYQFDAK 274

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +++   ++QA+      I+G FT + A  LA  +  G+   KL+ +    V       
Sbjct: 275 KYLISDATVSQALNGKSFVITGRFTPQEAKQLALDINYGTADYKLDFLSASFVSKTKSDS 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
               G  AI   + +I LF+++ YG  G +A  S+ L V LTL   +++    +  +I+ 
Sbjct: 335 VFIAGWIAIGLAIAIISLFLLINYGLLGALATISLSLYVFLTLLFFTIVRGEYSPITISA 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +V+GIG+ +D+N++  E  +       SV  +       +++ I DSNIT LIA +VLFF
Sbjct: 395 LVVGIGMNIDANVISFEVFKSRIYSGNSVLKANYQANRLSFNAILDSNITTLIAALVLFF 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAM----------------MIFIIRYKKMKSI 523
           FG   V+ F+IT+  SI+ ++   I   +                  +  +   K     
Sbjct: 455 FGTKNVKSFSITLIFSIIFTLIVTIGFTKFFTSFILKANFFQNNEKKLWLLGIKKYYLRK 514

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID----FKGGI 579
                +  +   D   I         +       + ++          G +    F GG 
Sbjct: 515 YQRGYNSIYSQIDYEKIYKYTRWLPLILFLGSIIVFAVFAGIYRSFGSGFNLAIDFSGGT 574

Query: 580 QLGVLANRPV-------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
              + ++              + S L+S  I   +        N    +      +    
Sbjct: 575 NFLIESSNSSYDLITKEKAEKIISFLDSQNINKSNSTILLNPLNENGNIFNLEIKTKLDL 634

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                      +    +       +  + +++LI   I+ V I+ I + I+  IRFKW F
Sbjct: 635 ATKIASLNAAIQNNFSNIRMTNYSISNEEAQKLIFNAILSVGIALIFVTIFTLIRFKWTF 694

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR------- 745
           +L  I +L+ ++   L    +  IE +   V A+LTLIGY+VND +VV+DR++       
Sbjct: 695 SLAIIFSLLFNVLMVLLAIIITRIEISQNLVVAILTLIGYTVNDTIVVFDRVKARFSEIN 754

Query: 746 -KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +N+  +      +++  ++I ET  RSVYTS+   ++++ + ++  S+   F++ M  G
Sbjct: 755 HENVYKFDK---IKEISLQAIRETAKRSVYTSLTTILTIVVLMIFYESIDIVFSLTMLIG 811

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +++   SS+FIA  I + +  +R +   +
Sbjct: 812 VIIGTYSSLFIATRIWIILESYRNRKKEM 840


>gi|254511526|ref|ZP_05123593.1| protein-export membrane protein SecD [Rhodobacteraceae bacterium
           KLH11]
 gi|221535237|gb|EEE38225.1| protein-export membrane protein SecD [Rhodobacteraceae bacterium
           KLH11]
          Length = 553

 Score =  238 bits (606), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 197/547 (36%), Positives = 303/547 (55%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43
           W  +L  ++C +GL +ALPN                         Q+   ++PS +P + 
Sbjct: 7   WKRVLIWLVCVVGLFMALPNAFYTRVEQSNDANTAIELGIDTPEMQAQAAQWPSWLPSSL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100
           ++LGLDLRGG+HL+ EV  +D     ++    E+R  L+ E   V ++R+     ++I +
Sbjct: 67  VNLGLDLRGGAHLLAEVKVEDVYEARMEAMWPEIRDALRDERATVGTIRKQPSAPDEIRV 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +         + V    + V +   V     +        I + LS+          +
Sbjct: 127 RISQPEGMPRALEVVRGLARQVQTLTGVGATD-IEARAEGDIIVVQLSEAEKLASDDRTV 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217
            Q++EIIR+RID++G  E TIQR G+ RILIQ+PG      L+ ++GTTA+++F+ V   
Sbjct: 186 RQALEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSAGELKGIIGTTAQLTFNPVVGP 245

Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
               +        V    +  G  Y++     ++G  L  A  +FD    +P V   F+ 
Sbjct: 246 ANSLDDSVRPGQKVVPSIEEGGRLYVITSAPVVTGEELVDAQPSFDQNG-RPAVSFRFNT 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR+F + T +NIG P A+VLD  V++APVI   IP G   I+G+FT+E +  LA +LR
Sbjct: 305 SGARKFGDYTLENIGAPFAIVLDDEVISAPVIQSHIPGGSGIITGDFTVEESTNLAVLLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L  +EER +G +LG DSI  G  A +   V +++FM + YG +G+ A+ ++ L
Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKVATIVAFVAVLVFMALSYGLFGIFANIALIL 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           NV L   LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++++G+
Sbjct: 425 NVGLLFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKSAKGPARAIELGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            +A S I D+N+T  I   +LF  G G VRGFAIT+GL IL S+FTAI + R M++    
Sbjct: 485 EKALSAILDANVTTFITATILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLMIVMWFE 544

Query: 517 YKKMKSI 523
            ++ K+I
Sbjct: 545 RRRPKTI 551



 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 95/208 (45%), Gaps = 4/208 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              GD   +      V  +   +           +GP++ ++ I  G V  I++ +A+L+
Sbjct: 346 IITGDFTVEESTNLAVLLRAGALPAGLEFLEERTIGPELGQDSIDAGKVATIVAFVAVLV 405

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + +   F + A   LIL++    G  +L G    L  +A ++  +G +V+  V++++
Sbjct: 406 FMALSYGL-FGIFANIALILNVGLLFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFE 464

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   ++      I+    + L   +  ++  FI+   +   G   +  FAI + 
Sbjct: 465 RIREELK---SAKGPARAIELGYEKALSAILDANVTTFITATILFAMGSGPVRGFAITLG 521

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830
            GI+ +  ++IF+   +++  ++ R   
Sbjct: 522 LGILTSVFTAIFVTRLMIVMWFERRRPK 549


>gi|292492396|ref|YP_003527835.1| protein-export membrane protein SecF [Nitrosococcus halophilus Nc4]
 gi|291580991|gb|ADE15448.1| protein-export membrane protein SecF [Nitrosococcus halophilus Nc4]
          Length = 314

 Score =  238 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 98/294 (33%), Positives = 165/294 (56%), Gaps = 2/294 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM  R   +  S+   + S+  L   GLN+GIDF GG  L V   +PV+
Sbjct: 1   MKLYKKSFRIDFMGKRRLALIFSVALLLTSLGSLIFQGLNFGIDFTGGTLLEVGYEQPVE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           LS VR +L     G    Q+F   ++ L+RL      + A+    E++          +T
Sbjct: 61  LSDVRQDLGEAGFGGAIVQHFGTTRDVLIRLAPGAERNNAELS-NEVLATLQANGDNPAT 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGPK+  EL  +G + ++ + I +LIY+ +RF++  A+G++  L+ D+   LG 
Sbjct: 120 MRRVEFVGPKVGEELTEQGGLAMLYALIGILIYVSLRFEYRLAIGSVAALVHDVLIVLGL 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+L  +EF+LT +AA+L +IGYS+ND +VV DR+R+N +      +   +++ S+N+TL 
Sbjct: 180 FSLLQLEFDLTVLAALLAVIGYSLNDTIVVSDRIRENFRKIRKG-TAVQVVNTSLNQTLS 238

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R+V TS+   + +  + ++GG  I SF++ +  G++V   SSI+IA+P  L + 
Sbjct: 239 RTVMTSLTTLLVLFALFIFGGEAIHSFSMALIMGVLVGTYSSIYIASPTALALG 292


>gi|262274804|ref|ZP_06052615.1| protein-export membrane protein SecF [Grimontia hollisae CIP
           101886]
 gi|262221367|gb|EEY72681.1| protein-export membrane protein SecF [Grimontia hollisae CIP
           101886]
          Length = 316

 Score =  238 bits (605), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 166/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F L+   ++I FMR       +S L    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQLLKPDLSIDFMRWSKPAFFLSALMIAASIFSLSTRWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL ++R +L++   GD   QNF   ++ +VRL+ +  D   +    +++           
Sbjct: 61  DLPLIRESLQAKGFGDAIVQNFGTARDVMVRLRPRD-DVQGELLGNQILNAIKAGTGQAV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S + +L+Y+ +RF+W  A GA+ +L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSLRFEWRLAAGAVVSLAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   IE +LT VAA+LT++GYS+ND +VVYDR+R+N +         ++++ S+++TL
Sbjct: 180 IFSFLQIEVDLTIVAALLTVVGYSLNDTIVVYDRIRENFRKMRKG-DASEIVNASVSQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + + GG++I  FA  +  GI +   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFLQGGAMIHGFATALLIGITIGTYSSIYVASALALKLGITRE 297


>gi|254476909|ref|ZP_05090295.1| protein-export membrane protein SecD [Ruegeria sp. R11]
 gi|214031152|gb|EEB71987.1| protein-export membrane protein SecD [Ruegeria sp. R11]
          Length = 553

 Score =  238 bits (605), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 203/547 (37%), Positives = 302/547 (55%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43
           W  +L  ++C  GLL+ALPN                           +  ++PS +P N 
Sbjct: 7   WKRVLIWLVCVTGLLLALPNAFYTRVEQANDAAAEITLRGETPERLEVAGQWPSFLPSNL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI---QNKITL 100
           ++LGLDLRGG+HL+ EV  +D     +     E+R  L+ E   V + R+    + +I L
Sbjct: 67  VNLGLDLRGGAHLLAEVKVEDVYAARMDALWPEVRDALRPERAEVGTFRRQPAPEGQIRL 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             ++        + V      + S          +       ++I LS+          +
Sbjct: 127 KISNPDGMTRALEVVRGLANPITSLTGAGASDITVS-GAGDILTIELSEAEKLASDDRTV 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217
            Q++EI+R+RID++G  E TIQR G+ RILIQ+PG    S L+ ++GTTA+++F+ V   
Sbjct: 186 RQALEIVRRRIDEVGTREPTIQRQGTDRILIQVPGIGSASELKAIIGTTAQLTFNPVVGR 245

Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
               ++  G    V    D  G  Y VE    ++G  L  A  +FD    +P V   F+ 
Sbjct: 246 GSDADANPGVGNKVIPSLDESGIYYTVEAAPVVTGEELVDAQPSFDQNG-RPAVSFRFNT 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR+F + T +NIG P A+VLD  V++APVI   I  G   I+GNFTIE +  +A +LR
Sbjct: 305 TGARKFGDYTAENIGSPFAIVLDEEVVSAPVIQAHIAGGSGIITGNFTIEESTNMAILLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L  +EER +G +LG DSI  G  A V   V +++FM + YG +G+ A+ ++ L
Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKVATVVAFVGVLVFMALSYGLFGVFANIALIL 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N+ L    LSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++D G+
Sbjct: 425 NIGLIFGALSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           S+A S I D+NIT  I  V+LF  G G VRGFAIT+GL I+ S+FTAI + R +++    
Sbjct: 485 SKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFE 544

Query: 517 YKKMKSI 523
            ++ K+I
Sbjct: 545 RRRPKTI 551



 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G V  +++ + +L+++ + +   F + A   LIL+I    G  +L G
Sbjct: 379 TIGPELGQDSIDAGKVATVVAFVGVLVFMALSYGL-FGVFANIALILNIGLIFGALSLIG 437

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K           ID+  ++ L   +  
Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELKA---GRGPARAIDEGYSKALSAILDA 494

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   I++  ++ R   
Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFERRRPK 549


>gi|23014245|ref|ZP_00054072.1| COG0342: Preprotein translocase subunit SecD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 522

 Score =  237 bits (604), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 198/531 (37%), Positives = 317/531 (59%), Gaps = 25/531 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             W + L ++I  +G++ A PN L +   D+ P       +SLGLDL+GGS+L+LEVD  
Sbjct: 5   PKWKIALVAIISMLGVIFASPNMLSRERADQMPHWF--QPVSLGLDLQGGSYLLLEVDTA 62

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 L    + +R+ L+KE +    +    + +++   ++  +    + +       +
Sbjct: 63  YVFREQLSSLVEGVRTVLRKEKVKYSDLGAKGDLVSVRIIEAEERAKARELLRKIDSSAS 122

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                      +    +  + +  S   +    + AIEQS+EI+R+RID++G  E +IQR
Sbjct: 123 -----------VDAKDDGTMVLKYSDVAVKARKAAAIEQSLEIVRRRIDELGTREPSIQR 171

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL---------- 233
            G  RI++QLPG +DP R++ LLG TAK++FH +  + S      G              
Sbjct: 172 QGEDRIVVQLPGVKDPDRIKALLGKTAKLTFHLLDDSTSADEAAKGRVPPGSMLLPSAEK 231

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                  Y+V  ++E+ G  L  + A ++    +PVV   F+  GA++F + TR+N GK 
Sbjct: 232 ERGMPETYVVRKRIEVGGDMLVDSKATYNEG--RPVVSFRFNAAGAKKFGDATRENAGKF 289

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+VLD +V++AP IN+ I  G   ISG+F+++ A  L+ +LRAG+LP  L ++EER VG
Sbjct: 290 LAIVLDDKVISAPRINEPILGGSGIISGSFSVQQAQDLSLLLRAGALPAPLQVLEERTVG 349

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
            DLG+DSI  G  A + GL L+V+ MI++YG  G +AD ++ LN+IL LA LS LGATLT
Sbjct: 350 PDLGADSIQAGAVASLLGLALVVVLMIIVYGTLGALADLAMVLNLILLLASLSALGATLT 409

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAG+VL +G+AVD+N+L+ ER+REE R  +S+  ++  G+ RA+ TIFD+++T L+A
Sbjct: 410 LPGIAGVVLTMGMAVDANVLIYERMREEQRNGRSIMSAIQAGYDRAFGTIFDAHVTTLVA 469

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
             +LF FG G +RGFA+T+ L +L S+FTA+ + R M++  +R++++KS+ 
Sbjct: 470 AALLFQFGSGPIRGFAVTLTLGLLASLFTAVLVNRIMVVSWVRWRRLKSLP 520



 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 74/174 (42%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+ G V  ++    +++ + I +       A   ++L++   L   +  G  
Sbjct: 349 GPDLGADSIQAGAVASLLGLALVVVLMIIVYG-TLGALADLAMVLNLILLLASLSALGAT 407

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A V+  +G +V+  V++Y+RMR+  +      S    I    +   G      +
Sbjct: 408 LTLPGIAGVVLTMGMAVDANVLIYERMREEQR---NGRSIMSAIQAGYDRAFGTIFDAHV 464

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              ++   +  +G   I  FA+ +  G++ +  +++ +   +++    WR   +
Sbjct: 465 TTLVAAALLFQFGSGPIRGFAVTLTLGLLASLFTAVLVNRIMVVSWVRWRRLKS 518


>gi|95929298|ref|ZP_01312042.1| protein-export membrane protein SecD [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134796|gb|EAT16451.1| protein-export membrane protein SecD [Desulfuromonas acetoxidans
           DSM 684]
          Length = 532

 Score =  237 bits (604), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 194/541 (35%), Positives = 305/541 (56%), Gaps = 25/541 (4%)

Query: 1   MRNNP-WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M N+     +L      + +L   P  +  S+ + + +A   + I LGLDL+GG HLVL 
Sbjct: 1   MSNSIKLRGLLVLFCLVLSVLALGPTLMKDSLPNWWKNAF--DPIHLGLDLQGGMHLVLG 58

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLF 118
           V+ D  V   L    D+  S L+ E +    + R+  +++ ++  D+     +   +   
Sbjct: 59  VEVDKAVESRLDSVVDQTESLLRDEDVIFKRIERKSDDRMVITVYDADAGAEVDALIQEN 118

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
              +     +    +              S   I  +  +A+ Q++E +R R+DQ G+SE
Sbjct: 119 FPNLE---PMTLDASGGYIEKN----YRFSDQEIANIKDYAVRQALETMRNRVDQFGLSE 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG--------- 229
             +QR   +RILIQLPG +DP R   LLG TA++ F  V  +   +  + G         
Sbjct: 172 PVLQRQSDNRILIQLPGVKDPQRAIDLLGKTARLEFKMVDESADIQQALQGNLKPGTKVL 231

Query: 230 -----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
                    + +  N  +V +K  ++G  L  A    D + ++P V I F+ +GA+RF +
Sbjct: 232 YEHRVDPMTKKATENPLVVFEKTALTGDLLADAQVRIDTRFNEPYVAIEFNAVGAQRFDQ 291

Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
           +T  N+GK +A+VLD  + +AP I + I  G AQISG+FT + A  LA +LRAGSLP  +
Sbjct: 292 ITAANVGKRMAIVLDDTIYSAPNIRERISGGSAQISGSFTEQEATDLAIVLRAGSLPAPV 351

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
            I+E+R VG  LG DSI KG  ++V G VL+VL M++ Y   GLVA+ ++ LN++  +A+
Sbjct: 352 KILEDRTVGPSLGHDSISKGVNSVVIGAVLVVLMMLLYYRGAGLVANVALALNLLFIMAM 411

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L+L  ATLTLP +AGIVL +G+AVD+N+L+ ER+REE R  +S   ++D GF++A+ TI 
Sbjct: 412 LTLFKATLTLPGLAGIVLTVGMAVDANVLIFERVREELRHGKSARVAIDAGFAKAFVTIV 471

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           D+NIT LIA +VLF FG G V+GFA+T+ + I+ SMFTAI + R +   ++  +++K + 
Sbjct: 472 DANITTLIAALVLFQFGTGPVKGFAVTLSVGIIASMFTAIFVSRLIFDLVLEGRQVKKLS 531

Query: 525 I 525
           I
Sbjct: 532 I 532



 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 104/262 (39%), Gaps = 9/262 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ----YQPGDSV 629
             +  + +   A        + +     ++  +         N   R+        G   
Sbjct: 272 FNEPYVAIEFNAVGAQRFDQITAANVGKRMAIVLDDTIYSAPNIRERISGGSAQISGSFT 331

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            Q      +  +   +     I     VGP +  + I KG+  V+I A+ +++ + + ++
Sbjct: 332 EQEATDLAIVLRAGSLPAPVKILEDRTVGPSLGHDSISKGVNSVVIGAVLVVLMMLLYYR 391

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L A   L L++   +    LF     L  +A ++  +G +V+  V++++R+R+ ++
Sbjct: 392 -GAGLVANVALALNLLFIMAMLTLFKATLTLPGLAGIVLTVGMAVDANVLIFERVREELR 450

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                 S R  ID    +     V  ++   I+ L +  +G   +  FA+ ++ GI+ + 
Sbjct: 451 ---HGKSARVAIDAGFAKAFVTIVDANITTLIAALVLFQFGTGPVKGFAVTLSVGIIASM 507

Query: 810 SSSIFIAAPIL-LFIYDWRAKN 830
            ++IF++  I  L +   + K 
Sbjct: 508 FTAIFVSRLIFDLVLEGRQVKK 529


>gi|302342506|ref|YP_003807035.1| protein-export membrane protein SecD [Desulfarculus baarsii DSM
           2075]
 gi|301639119|gb|ADK84441.1| protein-export membrane protein SecD [Desulfarculus baarsii DSM
           2075]
          Length = 541

 Score =  237 bits (603), Expect = 6e-60,   Method: Composition-based stats.
 Identities = 182/544 (33%), Positives = 288/544 (52%), Gaps = 27/544 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N      + +++  IGLL  +PN +P+     +P  +P ++I LGLDL+GG HLVLEV  
Sbjct: 4   NLTLRTAIVAVVIFIGLLFLMPNVVPKMP-AWWPGFLPSDKIRLGLDLQGGMHLVLEVKV 62

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   ++  + EL   LK E           N+I ++ A       + D +       
Sbjct: 63  AQAVEASVERTAQELERRLKSEVRATRPKAIGGNQIAITVAGENDLAKLKDIIENQYSN- 121

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
               + +      +     E+ + L    I  +   A  Q++E+IR RIDQ G++E  I 
Sbjct: 122 ----DYEIASTKPLDRGRSEVVLRLKAEAIADIEKQASAQALEVIRNRIDQFGVAEPEIV 177

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------ 236
                RIL+QLPG ++P R   L+G TA++ F  V                         
Sbjct: 178 PQEGGRILVQLPGVKEPKRALALIGKTAQLEFRLVDDTIDANSATMDSIPPGSQLLQMYR 237

Query: 237 --------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPV-VDISFDEMGARRFFEVTR 287
                     +  +V  +  ++G ++  A    DP       V ++F+  GA  F EVT 
Sbjct: 238 KDPITGRTVKSPIVVRARRAMTGENITDARVRPDPDYPGNYLVLVAFNSRGAADFAEVTT 297

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            N+ + LA+VLDG+V +AP I + I  G+A+I+G+F ++ A  LA +LR+G+LP  + ++
Sbjct: 298 KNVKRRLAIVLDGKVQSAPTIQEPITGGEARITGDFGLDEAKDLAVVLRSGALPAPIVVL 357

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG DSI +G  +++ G  ++VLF+++ Y   G++A+ ++  N++L L  + L
Sbjct: 358 EERTVGPSLGQDSINQGFLSMIVGFGVVVLFILIYYKASGIIANMALLANLVLILGAMGL 417

Query: 408 ------LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
                   ATLT+P IAGI+L IG+AVD+N+L+ ERIREE R  ++   +++ G+ RA  
Sbjct: 418 LGAMPEFQATLTMPGIAGIILTIGMAVDANVLIFERIREELRAGKTPAAAVEAGYGRATM 477

Query: 462 TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           TI D+NIT LI  +VL  FG G VRGFA+T+ L I  S+FTAI++ R +  +I+R  + K
Sbjct: 478 TILDANITTLIVALVLLQFGTGPVRGFAVTLSLGIASSLFTAITLTRVVFDWILRKYQPK 537

Query: 522 SIDI 525
            + I
Sbjct: 538 KLSI 541



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 81/182 (44%), Gaps = 11/182 (6%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI- 716
           GP + ++ I +G + +I+    ++++I I +K    + A   L+ ++   LG   L G  
Sbjct: 363 GPSLGQDSINQGFLSMIVGFGVVVLFILIYYK-ASGIIANMALLANLVLILGAMGLLGAM 421

Query: 717 -----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
                   +  +A ++  IG +V+  V++++R+R+ ++      +    ++         
Sbjct: 422 PEFQATLTMPGIAGIILTIGMAVDANVLIFERIREELRA---GKTPAAAVEAGYGRATMT 478

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  ++   I  L +  +G   +  FA+ ++ GI  +  ++I +   ++      + +  
Sbjct: 479 ILDANITTLIVALVLLQFGTGPVRGFAVTLSLGIASSLFTAITLTR-VVFDWILRKYQPK 537

Query: 832 RI 833
           ++
Sbjct: 538 KL 539


>gi|89068237|ref|ZP_01155647.1| protein-export membrane protein SecD [Oceanicola granulosus
           HTCC2516]
 gi|89046154|gb|EAR52212.1| protein-export membrane protein SecD [Oceanicola granulosus
           HTCC2516]
          Length = 553

 Score =  237 bits (603), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 192/549 (34%), Positives = 299/549 (54%), Gaps = 31/549 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPK 41
             W  IL  +   +GL +A+PNF                         +   ++PS +P 
Sbjct: 5   PLWRRILIWLTVAVGLFLAMPNFFYGRVEQSNDAEKAIEAGLSTEELAAQAAQWPSWLPD 64

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKI 98
             ++LGLDLRGG+HL+ EV+  D     +     E+R  L  E   +  + +     +++
Sbjct: 65  GLVNLGLDLRGGAHLLAEVNVADVYETRMDGLWPEVRDTLAAERDTLGFVTREDSAPDEL 124

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
            +  ++    E   +      + + +          +       ++I LS+         
Sbjct: 125 KVRISEPEGAERALELARGLARPIATLSGAGASDIEVT-ADGPVLTIRLSEAERAATDDR 183

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV- 217
            + QS+EIIR+RID++G  E +IQR G  RILIQ+PG      L+ ++GTTA+++F  V 
Sbjct: 184 TVRQSLEIIRRRIDEVGTREPSIQRQGDDRILIQVPGIGSAQELKDIIGTTAQLTFQPVV 243

Query: 218 ---LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
                 +   G    +    D +G  Y++E    ++G  L  A   FD    +P V   F
Sbjct: 244 SRTSDPDEAAGMGNELVPALDEEGTYYILESAPVVTGEDLVDAQPGFDQNN-RPAVTFRF 302

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
           +  GARRF + T  N+G P A+VLD  V++AP IN+AI  G   I+GNFT+E++  LA +
Sbjct: 303 NPAGARRFGDYTAANVGAPFAIVLDEEVISAPTINEAIRGGSGIITGNFTVESSTDLAVL 362

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           LRAG+LP  L  +EER VG +LG DSI  GT A +     +++FM + YG +GL A+ ++
Sbjct: 363 LRAGALPAGLTFLEERTVGPELGQDSIDAGTVACIVAFAAVMVFMALSYGLFGLFANVAL 422

Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
            +N+ +   LLSL+G TLTLP IAGIVL IG+AVD+N+LV ERIREE +  +    ++++
Sbjct: 423 LVNIAMIFGLLSLIGGTLTLPGIAGIVLTIGMAVDANVLVFERIREEVKTARGPARAIEL 482

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G+ +A S I D+NIT L+  ++L+  G G VRGFAIT+GL I+ S+FTAI + R +++  
Sbjct: 483 GYEKALSAIVDANITTLMTAIILYAMGSGPVRGFAITLGLGIVTSVFTAIFVTRLLIVTW 542

Query: 515 IRYKKMKSI 523
              ++ K+I
Sbjct: 543 FDRRRPKTI 551



 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 40/173 (23%), Positives = 87/173 (50%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++ ++ I  G V  I++  A+++++ + +   F L A   L+++I    G  +L G  
Sbjct: 381 GPELGQDSIDAGTVACIVAFAAVMVFMALSYGL-FGLFANVALLVNIAMIFGLLSLIGGT 439

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V+V++R+R+ +K   T+      I+    + L   V  ++
Sbjct: 440 LTLPGIAGIVLTIGMAVDANVLVFERIREEVK---TARGPARAIELGYEKALSAIVDANI 496

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              ++ + +   G   +  FAI +  GIV +  ++IF+   +++  +D R   
Sbjct: 497 TTLMTAIILYAMGSGPVRGFAITLGLGIVTSVFTAIFVTRLLIVTWFDRRRPK 549


>gi|126739016|ref|ZP_01754710.1| protein-export membrane protein SecD [Roseobacter sp. SK209-2-6]
 gi|126719633|gb|EBA16341.1| protein-export membrane protein SecD [Roseobacter sp. SK209-2-6]
          Length = 553

 Score =  237 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 209/547 (38%), Positives = 303/547 (55%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43
           W  +L  ++C  GLL+ALPN                           +  ++P  +P + 
Sbjct: 7   WKRVLIWLVCVTGLLLALPNGFYTRVEQANDAAAEIIAKGETPERLEIAGQWPDYLPSSL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100
           ++LGLDLRGG+HL+ EV  +D     +     E+R  L+ E   V S R+ Q    +I L
Sbjct: 67  VNLGLDLRGGAHLLAEVQVEDVYAARMDALWPEVRDVLRPERATVGSFRRQQAPEGEIRL 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +         + V      + S          +       I++ LS+          +
Sbjct: 127 KISKPEGMARALELVRGLASPITSLTGAGANDIEVSGAD-DIITVQLSEAEKLASNDRTV 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217
            QS+EIIR+RID++G  E TIQR G+ RILIQ+PG    S L+ L+GTTA+++F+ V   
Sbjct: 186 RQSLEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSASELKALIGTTAQLTFNPVVGR 245

Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
               ++  G    V    D  G  Y +E    ++G  L  A  +FD    +P V+  F+ 
Sbjct: 246 GSDPDASAGVGNKVVPSIDEPGTYYTIEAAPVVTGEELVDAQPSFDQNG-RPAVNFRFNT 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR+F + T +NIG P A+VLD  V++APVI   IP G   I+GNFTIE +  LA +LR
Sbjct: 305 SGARKFGDYTAENIGAPFAIVLDDEVISAPVIQSHIPGGSGIITGNFTIEESTNLAILLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L+ +EER +G +LG DSI  G  A V   V +++FM + YG +G+ A+ ++ L
Sbjct: 365 AGALPAGLDFLEERTIGPELGQDSIDAGKIATVVAFVAVLVFMALSYGLFGIFANVALIL 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           NV L    LSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++D G+
Sbjct: 425 NVALIFGFLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPAKAIDEGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           S+A S I D+NIT  I  V+LF  G G VRGFAIT+G+ IL S+FTAI + R M++    
Sbjct: 485 SKALSAILDANITTFITAVILFAMGSGPVRGFAITLGMGILTSVFTAIFVTRLMIVMWFE 544

Query: 517 YKKMKSI 523
            ++ K+I
Sbjct: 545 RRRPKAI 551



 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 92/176 (52%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +  +++ +A+L+++ + +   F + A   LIL++    GF +L G
Sbjct: 379 TIGPELGQDSIDAGKIATVVAFVAVLVFMALSYGL-FGIFANVALILNVALIFGFLSLIG 437

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K           ID+  ++ L   +  
Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELKA---GRGPAKAIDEGYSKALSAILDA 494

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   +++  ++ R   A
Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGMGILTSVFTAIFVTRLMIVMWFERRRPKA 550


>gi|56697180|ref|YP_167544.1| preprotein translocase subunit SecD [Ruegeria pomeroyi DSS-3]
 gi|56678917|gb|AAV95583.1| protein-export membrane protein SecD [Ruegeria pomeroyi DSS-3]
          Length = 553

 Score =  237 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 198/547 (36%), Positives = 304/547 (55%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43
           W  +L  ++C  GL++ALPN                          +   ++P  MP + 
Sbjct: 7   WKRVLIWLVCIGGLVLALPNAFYTRVEQSNDARAAIELRGETPELTATAAQWPDFMPSSL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100
           ++LGLDLRGG+HL+ EV   D     +     E+R+ L+     V ++R+     ++I +
Sbjct: 67  VNLGLDLRGGAHLLAEVKVSDVYAARMDAMWPEIRNSLRDARDTVGTIRKQPSKPDEIRV 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +         + V    + + +          +      E+ + LS+          +
Sbjct: 127 KISQPEGMSRALELVRGLARPIQTLTGAGSNDIEV-RGEGDEVIVTLSEAERLATDDRTV 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
            Q++EI+R+RID++G  E TIQR G+ RILIQ+PG    S L++++GTTA+++F+ V+  
Sbjct: 186 RQALEIVRRRIDEVGTREPTIQRQGADRILIQVPGIGSASELKEIIGTTAQLTFNPVISR 245

Query: 221 NSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
            +      GV        D +G  Y +E    ++G  L  A   FD    +P V+  F+ 
Sbjct: 246 GTDANARVGVGEKLAPSLDQEGVFYTIEAAPVVTGEELVDAQPAFDQNG-RPAVNFRFNT 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR+F + TRDN+G P A+ LDG V++APVI   IP G   I+GNFT+E +  LA +LR
Sbjct: 305 SGARKFGDYTRDNVGAPFAITLDGEVISAPVIQSHIPGGSGIITGNFTVEESTNLAVLLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L  +EER +G +LG DSI  G  A V   V ++ FM   YG +G+ A+ ++ +
Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKVATVVAFVAVLGFMWASYGLFGIFANIALIV 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           NV L   LLS++GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++++G+
Sbjct: 425 NVGLLFGLLSVIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKTAKGPARAIELGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            +A S I D+NIT  I  V+LF  G G VRGFAIT+GL IL S+FTAI + R +++    
Sbjct: 485 EKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLLVVTWFE 544

Query: 517 YKKMKSI 523
            ++ K+I
Sbjct: 545 RRRPKTI 551



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/175 (20%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G V  +++ +A+L ++W  +   F + A   LI+++    G  ++ G
Sbjct: 379 TIGPELGQDSIDAGKVATVVAFVAVLGFMWASYGL-FGIFANIALIVNVGLLFGLLSVIG 437

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K   T+      I+    + L   +  
Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---TAKGPARAIELGYEKALSAILDA 494

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   +++  ++ R   
Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLLVVTWFERRRPK 549


>gi|322419803|ref|YP_004199026.1| protein-export membrane protein SecD [Geobacter sp. M18]
 gi|320126190|gb|ADW13750.1| protein-export membrane protein SecD [Geobacter sp. M18]
          Length = 532

 Score =  237 bits (603), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 188/540 (34%), Positives = 289/540 (53%), Gaps = 23/540 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   W + L  +      +   P  +       +   +PK++I LGLDL+GG+HLV+EV
Sbjct: 1   MKGYTWRISLILIFIVASCVYLTPTLVDTLP-GWWSGLLPKDKIHLGLDLQGGTHLVMEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119
           +    V G L + + +L   L  + +    + R   +K+ L+  D    + +   V    
Sbjct: 60  ETQKAVEGSLDLIATDLEDSLASDNLRFKKVARLGGDKVQLTLYDRGSADKVQALVKKKY 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         +        + + +++         A+ Q++E IR RIDQ G+SE 
Sbjct: 120 -------PDLETLPVFDEGGFVNMQLRINEKEAQVRKDRAVAQALETIRNRIDQFGVSEP 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS--- 236
            IQR G + I++QLPG +DP R  +L+G TA++ F  V  + +            D    
Sbjct: 173 VIQREGINNIVVQLPGIKDPKRAIELIGKTARLEFKLVDESVNAATATASTVPEDDELLY 232

Query: 237 -----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                           +V+ K  I+G  L  A    D + ++P V I F+  GAR F +V
Sbjct: 233 EKRSDPATGAVTETPLVVKKKAMITGELLTDAQIRIDSQYNQPYVAIDFNSTGARLFDQV 292

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK  A+VLD  + +APVI + I  G AQISG+FT + A  LA +LRAGSLP  + 
Sbjct: 293 TAANVGKRFAIVLDSNIYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVK 352

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           I++   VG  LG DSI+KG  A + G+VL+V FM + Y   G+VA+  + LN++  + +L
Sbjct: 353 ILQNVTVGPSLGKDSIHKGLVAGLIGVVLVVSFMALYYKLSGMVANLGMVLNILFLMGVL 412

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           S LGATLTLP IA IVL IG++VDSN+L+ ERIREE R  ++   +LD G+ +A+ TI D
Sbjct: 413 SALGATLTLPGIAAIVLLIGMSVDSNVLIFERIREELRLGKTPHAALDAGYDKAFLTIMD 472

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           S++TALI   VLF FG G V+GFA+++ L I+I++FT++   + +    +    +K + I
Sbjct: 473 SHVTALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLLATKVLFDAFLDRVHVKRLSI 532



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 91/181 (50%), Gaps = 5/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
               VGP + ++ I KG+V  +I  + ++ ++ + +K    + A   ++L+I   +G  +
Sbjct: 355 QNVTVGPSLGKDSIHKGLVAGLIGVVLVVSFMALYYKLS-GMVANLGMVLNILFLMGVLS 413

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G    L  +AA++ LIG SV+  V++++R+R+ ++L     +    +D   ++     
Sbjct: 414 ALGATLTLPGIAAIVLLIGMSVDSNVLIFERIREELRL---GKTPHAALDAGYDKAFLTI 470

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + + + A I+   +  +G   +  FA+ ++ GI++   +S+ +A  +L   +  R    R
Sbjct: 471 MDSHVTALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSL-LATKVLFDAFLDRVHVKR 529

Query: 833 I 833
           +
Sbjct: 530 L 530


>gi|148554373|ref|YP_001261955.1| preprotein translocase subunit SecD [Sphingomonas wittichii RW1]
 gi|148499563|gb|ABQ67817.1| protein-export membrane protein SecD [Sphingomonas wittichii RW1]
          Length = 531

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 190/531 (35%), Positives = 311/531 (58%), Gaps = 13/531 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             W V    ++   G+L++LP+F+P+S ++R         I+LGLDL GGSHL+LE D  
Sbjct: 5   PRWKVWSICLLLAAGILLSLPSFIPESTIERAGLHGLPR-INLGLDLSGGSHLMLEADTT 63

Query: 64  DFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           D     +    +++R+ +++    I +  +     +++    D+   +   +++      
Sbjct: 64  DLAKQNIAKMEEQVRTEMRRADPPIAIGDISTTGGRLSFFVRDASRIDAAVERIRT---L 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                    +   +       I +  ++  + Q    A++ + E++R+RID++G  E TI
Sbjct: 121 TQPSGMTGQRDWDVQVVDSTRIVLTPTKQGLAQATDSAMQVATEVVRKRIDEMGTREPTI 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD---- 237
            R G+ RI++Q+PG Q+P+ L+ LLG TAK+ F  V           G   +        
Sbjct: 181 IRQGAERIVVQVPGLQNPAALKALLGRTAKLEFKLVDLTADPAAVAQGRAPVGSEVVAYA 240

Query: 238 ---GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   V+ +  +SG  L  A  +++ +T++PVV I+F+  G R+F  VT++N+GKP 
Sbjct: 241 EPGQAPIAVKRRAMLSGDELIDAKLSYNSQTNEPVVSITFNSEGGRKFARVTQENVGKPF 300

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A++LDG+VL+AP IN+ I  G+AQISG FT ++A  LA  LR+G LP+ L +VEER VG 
Sbjct: 301 AMILDGKVLSAPNINEPILGGQAQISGRFTTDSANQLAIALRSGKLPVALKVVEERTVGP 360

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
           DLG+DSI  GT A V  +V +V+FM+V YG++G  A+ ++ +NV + L +++LL ATLTL
Sbjct: 361 DLGADSIRAGTLASVIAVVGVVIFMLVSYGRFGFYANLAVVINVFVILGIMALLNATLTL 420

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAG VL IG AVD+N+L+NER+REE R+ +S   +++ G+  A  TIF++N+T  IA 
Sbjct: 421 PGIAGFVLTIGTAVDANVLINERVREELRRGRSPTQAVEHGYKEASRTIFEANVTHAIAG 480

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +++F  G G V+GFA+ + + I  S+FTA+   R ++   +R+K+  SI I
Sbjct: 481 LIMFVLGSGQVKGFAVVLLIGIATSVFTAVVFTRMLVALWLRHKRPTSIHI 531



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 76/174 (43%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR G +  +I+ + ++I++ + +   F   A   +++++   LG  AL    
Sbjct: 359 GPDLGADSIRAGTLASVIAVVGVVIFMLVSYG-RFGFYANLAVVINVFVILGIMALLNAT 417

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++ +R+R+ ++      S    ++    E        ++
Sbjct: 418 LTLPGIAGFVLTIGTAVDANVLINERVREELR---RGRSPTQAVEHGYKEASRTIFEANV 474

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I+ L M V G   +  FA+ +  GI  +  +++     ++      +   +
Sbjct: 475 THAIAGLIMFVLGSGQVKGFAVVLLIGIATSVFTAVVFTRMLVALWLRHKRPTS 528


>gi|255658296|ref|ZP_05403705.1| protein-export membrane protein SecF [Mitsuokella multacida DSM
           20544]
 gi|260849612|gb|EEX69619.1| protein-export membrane protein SecF [Mitsuokella multacida DSM
           20544]
          Length = 304

 Score =  236 bits (602), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 145/296 (48%), Gaps = 1/296 (0%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +       R     IS L  I  +  +   G N+GIDF GG  + +  ++PV ++ VR+
Sbjct: 1   MLKFDIAGHRKIWFLISALIIIPGLICMAVRGFNFGIDFTGGTIIDLKFSQPVSIAEVRT 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L    + D + Q    + +              +    + V   +   V    +   E 
Sbjct: 61  SLAKYDLDDATIQLSGAQSDVKESEDVMIRTRDLEEDQRKEVMATLKTDVGDYQVLREEK 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  I  ELI   ++ +++S   +++Y+  RF+  F + A+  LI DI   L  F+L   
Sbjct: 121 VGATIGGELITNAVLALVVSWALIILYVAYRFELRFGIAAVLALIHDILIVLAVFSLTQR 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775
           + + + +AA+LT++GYS+ND +V++DR+R+N+KL+     +  +L+++SI +TL RS+YT
Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGNIDELVNRSIYQTLTRSLYT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 +   +  +GG     FA  +  G  V   SSIFIA+P+ +   +W  K  
Sbjct: 241 VFTVLFTTAALYFFGGDTTKDFAFALLVGFTVGCYSSIFIASPLWIVFRNWGEKKK 296


>gi|308189857|ref|YP_003922788.1| protein-export membrane protein [Mycoplasma fermentans JER]
 gi|319777050|ref|YP_004136701.1| protein-export membrane protein [Mycoplasma fermentans M64]
 gi|307624599|gb|ADN68904.1| protein-export membrane protein [Mycoplasma fermentans JER]
 gi|318038125|gb|ADV34324.1| Protein-export membrane protein [Mycoplasma fermentans M64]
          Length = 867

 Score =  236 bits (602), Expect = 9e-60,   Method: Composition-based stats.
 Identities = 141/865 (16%), Positives = 315/865 (36%), Gaps = 73/865 (8%)

Query: 1   MRN----NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           MR     + W   +   I  I  +IA+                   + +L ++  GG  +
Sbjct: 9   MRKIFSWSNWKRWVVLSITLISTIIAIVCGSL---------FYISKKPNLSIEYGGGVEI 59

Query: 57  VLEVD--EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114
           +++         + + +  ++ +   L         +      + +              
Sbjct: 60  LVQAQKNGKKVNDKYAKNIANTMDDRLTG------GIAFNGTTVNVEGDGILKITQNGKL 113

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            +   + +   ++  P   L                + +++    IE  +  +++   + 
Sbjct: 114 SSKEKEELEKIVSSKPNLILTDGDMIPLFVRGKFNESREKIDYSRIEDYIPPLKENGAKF 173

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                + +                  R        +  +            ++       
Sbjct: 174 KFIPPSEKG-----------------RSGYYGIDVSLRNNAAADEWYKATEYITKNNKDP 216

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +     +  +     T              +F  +G +   +  + N  K  
Sbjct: 217 KKRKILMWLN----LDALVKFAKTEYASDWKEAGENPYNFVHIGNKALNDKGKPNALKEY 272

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                  +L+   + + +   +  ISG F    A   AA +  GS    L I+    + A
Sbjct: 273 EFKGTNYLLSEAGLREPLKGTQFFISGRFNEAQAKKTAANINFGSANYDLKILSSNYIEA 332

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S+S      A      +I +FMIV YG  G ++  SI L + LTL L ++L    + 
Sbjct: 333 SKTSNSFRSALLAGAVVFSIIAVFMIVNYGLLGALSTISIALYMFLTLLLFTVLRGEYSP 392

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            +IA +++GIG++VDSNI+  ER++ E      +  ++     R   +I D+NI  L+ +
Sbjct: 393 VTIAALIIGIGISVDSNIITFERLKNEVYAGDRLKKAMKNANHRTLGSILDANILTLLIS 452

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPL 528
            VLFFFG   ++GF+I++  S+   +   +   R + + ++             I    +
Sbjct: 453 FVLFFFGTSTIKGFSISLVFSVTFILIVMLIFTRGLSVLLVNTGAFDKKLWLLGIRQKKI 512

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANR 587
                        F++   W    S++F +  I +      +N          +      
Sbjct: 513 LAPKKENKFNKFDFVKNSKWFGIGSLIFIVAGIIVFAVFAGINKDFWAGFNRSMEFGGGV 572

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLV-----------------RLQYQPGDSVA 630
            + +    S   +  I DI  +       + +                   + Q   S  
Sbjct: 573 RISIESANSAYVNSDILDIQNKFMAHMNKWGIDPNKITFQIVPMDLGNGNFKLQIETSQD 632

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIV--GPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            + VL  ++  +   V                 + +L++  ++ +  + + +++Y +IRF
Sbjct: 633 LSNVLSKIESDVATFVSSGNKPRFIAYAISTSRAFDLLKYSMIAIAGAFLVVIVYTFIRF 692

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           KW +++ A+  L+ D+  ++ F  +  ++ +   +AA+L++  +S+ND ++V++R+++ +
Sbjct: 693 KWTYSIAAVFGLLHDVLMSIAFIVVARLQLSPIMIAALLSITAFSINDTIIVFERIKETI 752

Query: 749 KLYTTS-----ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
                         +++ + +I +T  RS+YT++   +S+L + ++G +   SF I M F
Sbjct: 753 NTQYHGVFLSKALIKEIANNAIKDTFKRSLYTTLTTVVSILVLLMFGNATDLSFNIVMIF 812

Query: 804 GIVVAASSSIFIAAPILLFIYDWRA 828
           G+VV + SSIFI   + + +   R 
Sbjct: 813 GLVVGSYSSIFICTWLWIKLETKRQ 837



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 77/205 (37%), Gaps = 4/205 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                                 I ++  +    +    R  ++   +    + +++ + +
Sbjct: 302 NEAQAKKTAANINFGSANYDLKILSSNYIEASKTSNSFRSALLAGAVVFSIIAVFMIVNY 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               AL    ++ L +  TL  F +   E++   +AA++  IG SV+  ++ ++R++  +
Sbjct: 362 GLLGALS-TISIALYMFLTLLLFTVLRGEYSPVTIAALIIGIGISVDSNIITFERLKNEV 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                    +  +  + + TLG  +  ++   +    +  +G S I  F+I + F +   
Sbjct: 421 YAGDR---LKKAMKNANHRTLGSILDANILTLLISFVLFFFGTSTIKGFSISLVFSVTFI 477

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
               +     + + + +  A + ++
Sbjct: 478 LIVMLIFTRGLSVLLVNTGAFDKKL 502


>gi|225851087|ref|YP_002731321.1| protein-export membrane protein SecF [Persephonella marina EX-H1]
 gi|225646043|gb|ACO04229.1| protein-export membrane protein SecF [Persephonella marina EX-H1]
          Length = 313

 Score =  236 bits (602), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 163/301 (54%), Gaps = 2/301 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               + +   I F++ +  G   SIL  + S+ ++FT G N+G+DF GG  + V  + PV
Sbjct: 1   MRNFLNEPPNIDFLKIKKQGYIFSILLVLLSLGVIFTKGFNFGLDFTGGTSIQVRFSEPV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +   VR+ L  + + D   Q    +K              A     ++ K    +     
Sbjct: 61  NTGDVRNALRIVNLQDSVIQEIGTDKREYEIRVSLKKGKSA-EIYAKVKKALDEKFKDKY 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I+  + +G  +  EL +  +  ++   +A+LIY+  RF+  F+LGA+  L  D   TLG
Sbjct: 120 EIRKMDYIGAVVGEELRKASVYSIVAVLVAILIYVSYRFEPVFSLGAVIPLFHDAIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            FALFGIE NL  +AA+LT++GYS+ND ++++DR+R+N+K+     + + L+++SINE L
Sbjct: 180 IFALFGIEVNLAVIAAILTVLGYSLNDTIIIFDRIRENIKIRGKK-NLQLLVNQSINENL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ TS     SVL + ++GG  +  FA+ +  GIV    SSI++A+PI++ +  +  K
Sbjct: 239 ARTIITSGTTLFSVLALYLFGGESLKGFALALLIGIVFGTYSSIYVASPIIVDLERFLRK 298

Query: 830 N 830
            
Sbjct: 299 K 299


>gi|238809834|dbj|BAH69624.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 876

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 141/865 (16%), Positives = 315/865 (36%), Gaps = 73/865 (8%)

Query: 1   MRN----NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           MR     + W   +   I  I  +IA+                   + +L ++  GG  +
Sbjct: 18  MRKIFSWSNWKRWVVLSITLISTIIAIVCGSL---------FYISKKPNLSIEYGGGVEI 68

Query: 57  VLEVD--EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114
           +++         + + +  ++ +   L         +      + +              
Sbjct: 69  LVQAQKNGKKVNDKYAKNIANTMDDRLTG------GIAFNGTTVNVEGDGILKITQNGKL 122

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            +   + +   ++  P   L                + +++    IE  +  +++   + 
Sbjct: 123 SSKEKEELEKIVSSKPNLILTDGDMIPLFVRGKFNESREKIDYSRIEDYIPPLKENGAKF 182

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                + +                  R        +  +            ++       
Sbjct: 183 KFIPPSEKG-----------------RSGYYGIDVSLRNNAAADEWYKATEYITKNNKDP 225

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +     +  +     T              +F  +G +   +  + N  K  
Sbjct: 226 KKRKILMWLN----LDALVKFAKTEYASDWKEAGENPYNFVHIGNKALNDKGKPNALKEY 281

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                  +L+   + + +   +  ISG F    A   AA +  GS    L I+    + A
Sbjct: 282 EFKGTNYLLSEAGLREPLKGTQFFISGRFNEAQAKKTAANINFGSANYDLKILSSNYIEA 341

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S+S      A      +I +FMIV YG  G ++  SI L + LTL L ++L    + 
Sbjct: 342 SKTSNSFRSALLAGAVVFSIIAVFMIVNYGLLGALSTISIALYMFLTLLLFTVLRGEYSP 401

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            +IA +++GIG++VDSNI+  ER++ E      +  ++     R   +I D+NI  L+ +
Sbjct: 402 VTIAALIIGIGISVDSNIITFERLKNEVYAGDRLKKAMKNANHRTLGSILDANILTLLIS 461

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPL 528
            VLFFFG   ++GF+I++  S+   +   +   R + + ++             I    +
Sbjct: 462 FVLFFFGTSTIKGFSISLVFSVTFILIVMLIFTRGLSVLLVNTGAFDKKLWLLGIRQKKI 521

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANR 587
                        F++   W    S++F +  I +      +N          +      
Sbjct: 522 LAPKKENKFNKFDFVKNSKWFGIGSLIFIVAGIIVFAVFAGINKDFWAGFNRSMEFGGGV 581

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLV-----------------RLQYQPGDSVA 630
            + +    S   +  I DI  +       + +                   + Q   S  
Sbjct: 582 RISIESANSAYVNSDILDIQNKFMAHMNKWGIDPNKITFQIVPMDLGNGNFKLQIETSQD 641

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIV--GPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            + VL  ++  +   V                 + +L++  ++ +  + + +++Y +IRF
Sbjct: 642 LSNVLSKIESDVATFVSSGNKPRFIAYAISTSRAFDLLKYSMIAIAGAFLVVIVYTFIRF 701

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           KW +++ A+  L+ D+  ++ F  +  ++ +   +AA+L++  +S+ND ++V++R+++ +
Sbjct: 702 KWTYSIAAVFGLLHDVLMSIAFIVVARLQLSPIMIAALLSITAFSINDTIIVFERIKETI 761

Query: 749 KLYTTS-----ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
                         +++ + +I +T  RS+YT++   +S+L + ++G +   SF I M F
Sbjct: 762 NTQYHGVFLSKALIKEIANNAIKDTFKRSLYTTLTTVVSILVLLMFGNATDLSFNIVMIF 821

Query: 804 GIVVAASSSIFIAAPILLFIYDWRA 828
           G+VV + SSIFI   + + +   R 
Sbjct: 822 GLVVGSYSSIFICTWLWIKLETKRQ 846



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 77/205 (37%), Gaps = 4/205 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                                 I ++  +    +    R  ++   +    + +++ + +
Sbjct: 311 NEAQAKKTAANINFGSANYDLKILSSNYIEASKTSNSFRSALLAGAVVFSIIAVFMIVNY 370

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               AL    ++ L +  TL  F +   E++   +AA++  IG SV+  ++ ++R++  +
Sbjct: 371 GLLGALS-TISIALYMFLTLLLFTVLRGEYSPVTIAALIIGIGISVDSNIITFERLKNEV 429

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                    +  +  + + TLG  +  ++   +    +  +G S I  F+I + F +   
Sbjct: 430 YAGDR---LKKAMKNANHRTLGSILDANILTLLISFVLFFFGTSTIKGFSISLVFSVTFI 486

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
               +     + + + +  A + ++
Sbjct: 487 LIVMLIFTRGLSVLLVNTGAFDKKL 511


>gi|262277203|ref|ZP_06054996.1| protein-export membrane protein SecF [alpha proteobacterium
           HIMB114]
 gi|262224306|gb|EEY74765.1| protein-export membrane protein SecF [alpha proteobacterium
           HIMB114]
          Length = 302

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 110/296 (37%), Positives = 177/296 (59%), Gaps = 4/296 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                   I F++       +S L  + S    F++GLN GIDFKGG  + +  ++    
Sbjct: 1   MFNIYNKNISFLKFYKQFYLLSFLLIVISFISFFSNGLNLGIDFKGGTVIEMQFDKKYSA 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + +R  L   ++GD+  + F   + FL   + + G S     V   ++K +TE +     
Sbjct: 61  TNIREALIQQELGDVKVKEFGNSQTFLAIFEKKSGKSDFIPNVKTQLEKSLTETINF--- 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  E+VGPKIS+EL + GI  V+I+ I ML YIW+RF+W F+LG+I  L+ D+  TLG F
Sbjct: 118 RRVEMVGPKISKELTKSGIYAVLIALILMLFYIWLRFEWQFSLGSILALLHDVILTLGAF 177

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           ++ G EFNL+ +AA+LT++GYS+ND VV+YDR+R+N+K    S    DLI+ S+NETL R
Sbjct: 178 SIIGFEFNLSIIAAILTIVGYSMNDTVVIYDRIRENLKKDDKS-DLLDLINISVNETLPR 236

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++ TS+   ++++ +  +GG ++  F+  + +G++V   SSIFIAAP++L     R
Sbjct: 237 TLKTSITTLLALIAIYFFGGEILRGFSFALIWGVIVGTYSSIFIAAPLILIFNVKR 292


>gi|259418712|ref|ZP_05742629.1| protein-export membrane protein SecD [Silicibacter sp. TrichCH4B]
 gi|259344934|gb|EEW56788.1| protein-export membrane protein SecD [Silicibacter sp. TrichCH4B]
          Length = 554

 Score =  236 bits (601), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 205/548 (37%), Positives = 302/548 (55%), Gaps = 32/548 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43
           W  +L  ++C  GLL ALPN                          ++ +++P  MP   
Sbjct: 7   WKRVLIWLVCVAGLLAALPNAFYTRVEQSNDAWAQIEVEGETPERLTVAEQWPEWMPSGL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI----QNKIT 99
           ++LGLDLRGG+HL+ EV   D     +     E+R+ L+ E   + + R+I     ++I 
Sbjct: 67  VNLGLDLRGGAHLLAEVQVSDVYTARMDALWPEVRNVLRDERGTIGTFRRIPEAPADQIR 126

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           L  +D+       + V      V S          +       I+I LS           
Sbjct: 127 LRLSDAAGMSRALELVRGLANPVTSLTGAGATDITVS-GQGDVITIALSDEEKLASDDRT 185

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           + QS+EIIR+RID++G  E TIQR GS RILIQ+PG    + L++++GTTA+++F+ V+ 
Sbjct: 186 VRQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKEIIGTTAQLTFNPVVS 245

Query: 220 NNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
             S      G+        D  G  Y VE    ++G  L  A   FD    +P V+  F+
Sbjct: 246 RGSDADASAGIGNKVIPSIDEPGTYYTVESAPVVTGEELVDAQPAFDQNG-QPAVNFRFN 304

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
             GAR+F + T  NIG P A+VLD  V++APVI   IP G   I+GNF++E +  LA +L
Sbjct: 305 TAGARKFGDYTAQNIGAPFAIVLDDEVISAPVIRSHIPGGSGIITGNFSVEDSTQLAVLL 364

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           RAG+LP +L  +EER +G +LG DSI  G  A V     +++FM++ YG +G  A+ ++ 
Sbjct: 365 RAGALPAELQFLEERTIGPELGQDSIDAGKVATVVAFAAVLVFMVLSYGLFGFFANIALI 424

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           LN+ L    LSL+G TLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++D G
Sbjct: 425 LNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEG 484

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           +++A S I D+NIT  I  V+LF  G G VRGFAIT+GL IL S+FTAI + R +++   
Sbjct: 485 YAKALSAIVDANITTFITAVILFAIGSGPVRGFAITLGLGILTSVFTAIFVTRLIIVMWF 544

Query: 516 RYKKMKSI 523
             ++ K+I
Sbjct: 545 ERRRPKTI 552



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 3/140 (2%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            F   A   LIL+I    G  +L G    L  +A ++  +G +V+  V++++R+R+ +K 
Sbjct: 414 LFGFFANIALILNIALIFGALSLIGGTLTLPGIAGIVLTVGMAVDANVLIFERIREELKA 473

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                     ID+   + L   V  ++  FI+ + +   G   +  FAI +  GI+ +  
Sbjct: 474 ---GRGPARAIDEGYAKALSAIVDANITTFITAVILFAIGSGPVRGFAITLGLGILTSVF 530

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           ++IF+   I++  ++ R   
Sbjct: 531 TAIFVTRLIIVMWFERRRPK 550


>gi|258404973|ref|YP_003197715.1| preprotein translocase subunit SecD [Desulfohalobium retbaense DSM
           5692]
 gi|257797200|gb|ACV68137.1| protein-export membrane protein SecD [Desulfohalobium retbaense DSM
           5692]
          Length = 533

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 182/536 (33%), Positives = 297/536 (55%), Gaps = 25/536 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M +  W ++L  ++  +GL  ALP+ LP          +P   ++LGLDL+GG HL L V
Sbjct: 1   MSSLRWRIVLAVIVLGLGLAYALPSVLPSG--SGIQKMLPDKEVNLGLDLKGGMHLTLGV 58

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           D +  +   L     ++R+  ++E   +    + +  N +    A     E +   +   
Sbjct: 59  DLETAIQNALSQTGQDIRAEAREESILVLRPEVDKAGN-LQFWLAKQEQSETLQALLEDR 117

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
              V        +    +    ++ ++       + +    ++Q+++ IR R+DQ G++E
Sbjct: 118 FPNV------SIQGVETLDNGRQKYTVGYRPKYREHLEEMTLDQALKTIRNRVDQFGVAE 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
             I++   +RI +QLPG +DP R  +++G TA + F  V  +   +    G+        
Sbjct: 172 PDIRKQQGNRIQVQLPGLEDPERAIKIIGQTAHLEFKLVDEDADAQKAERGIVPPGSELA 231

Query: 239 -------------NQYLVEDKVEISGIHLNGATANFDPK-THKPVVDISFDEMGARRFFE 284
                           ++E    ++G ++  A+  FD    ++P V +SF++ G+R F  
Sbjct: 232 YLQRKMPDGSYKKQPIVLEKNALLTGEYITDASTQFDTSGFNQPYVALSFNQRGSRLFER 291

Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
           +T +++G  LA+VLDG+V +AP I + I  G+A I+G FT E A  LA +LRAGSLP  +
Sbjct: 292 ITAEHVGDRLAIVLDGKVYSAPRIQERISGGRASITGGFTTEEAHDLALVLRAGSLPAPV 351

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
           ++++ER+VG  LG  SI +G  +IV G  L++LFM++ YG  G+VAD  + LN++L LA 
Sbjct: 352 DVLQERSVGPSLGQQSIDQGIMSIVVGGALVLLFMVIYYGIGGIVADTVLALNILLILAG 411

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L+  GATLTLP IAGI+L IG+AVD+N+L+ ERIREE R+      ++D GF+RA  TI 
Sbjct: 412 LAGFGATLTLPGIAGIILTIGMAVDANVLIFERIREELRRGLGPRKAVDEGFARATLTIL 471

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           D+N+T +IA ++L+ FG G +RGFA+T+ L I+ SMFTAI + R M    +  K+ 
Sbjct: 472 DANVTTIIAAIILYQFGTGPIRGFAVTLSLGIVASMFTAIFVARIMFDLWLSRKQP 527



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 83/181 (45%), Gaps = 4/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
               VGP + ++ I +GI+ +++    +L+++ I +     +      +  +    G  A
Sbjct: 355 QERSVGPSLGQQSIDQGIMSIVVGGALVLLFMVIYYGIGGIVADTVLALNILLILAGL-A 413

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            FG    L  +A ++  IG +V+  V++++R+R+ ++     +  R  +D+         
Sbjct: 414 GFGATLTLPGIAGIILTIGMAVDANVLIFERIREELR---RGLGPRKAVDEGFARATLTI 470

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++   I+ + +  +G   I  FA+ ++ GIV +  ++IF+A  +       +   + 
Sbjct: 471 LDANVTTIIAAIILYQFGTGPIRGFAVTLSLGIVASMFTAIFVARIMFDLWLSRKQPASS 530

Query: 833 I 833
           +
Sbjct: 531 L 531


>gi|197118810|ref|YP_002139237.1| preprotein translocase subunit SecD [Geobacter bemidjiensis Bem]
 gi|197088170|gb|ACH39441.1| protein export membrane protein SecD [Geobacter bemidjiensis Bem]
          Length = 532

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 187/540 (34%), Positives = 286/540 (52%), Gaps = 23/540 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   W + L  +      +   P  +       +   +PK++I LGLDL+GG+HLV+ V
Sbjct: 1   MKGYTWRISLILVFIIASFVYLTPTLVDTLP-SWWSGLLPKDKIHLGLDLQGGTHLVMGV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119
           + +  V G L + + +L   L ++ +   S+ R   +K+ L+  D    +     +    
Sbjct: 60  ETEKAVEGSLDLIATDLEDSLTQQNLRYKSIARVGNDKVQLTLYDRSSADTAQALIKKKY 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                                  + + +++         A+ Q++E IR RIDQ G+SE 
Sbjct: 120 -------PDMQTLPATDEGGFIGMQVRINEKEAQVRKDRAVAQALETIRNRIDQFGVSEP 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS--- 236
            IQR G   I++QLPG +DP R   L+G TA++ F  V    +            D    
Sbjct: 173 VIQREGLTNIVVQLPGIKDPKRAIDLIGKTARLEFKLVDETINAATATASGLPADDELLY 232

Query: 237 -----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                           +V+ K  I+G  L  A    D + ++P V I F+  GAR F +V
Sbjct: 233 EKKTDATTGAVSETPIVVKRKAIITGDLLTDAQIRIDSQYNQPYVAIDFNSTGARLFDQV 292

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK  A+VLD  V +APVI + I  G AQISG+FT + A  LA +LRAGSLP  + 
Sbjct: 293 TAANVGKRFAIVLDNNVYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVK 352

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           I++   VG  LG DSI+KG  A + G++L+V FM + Y   G+VA+F + LN++  +  L
Sbjct: 353 ILQNVTVGPSLGKDSIHKGLMAGLIGVLLVVGFMAIYYKICGMVANFGMVLNILFLMGAL 412

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           S LGATLTLP IA IVL +G++VDSN+L+ ERIREE R  ++   +LD G+ +A+ TI D
Sbjct: 413 SALGATLTLPGIAAIVLLVGMSVDSNVLIFERIREELRLGKTPHAALDSGYDKAFLTIMD 472

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           S++TALI   VLF FG G V+GFA+++ L I+I++FT++   + +    +    +K + I
Sbjct: 473 SHVTALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLVSTKVIFDAYLERAHVKRLSI 532



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 92/181 (50%), Gaps = 5/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
               VGP + ++ I KG++  +I  + ++ ++ I +K    + A   ++L+I   +G  +
Sbjct: 355 QNVTVGPSLGKDSIHKGLMAGLIGVLLVVGFMAIYYKIC-GMVANFGMVLNILFLMGALS 413

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G    L  +AA++ L+G SV+  V++++R+R+ ++L     +    +D   ++     
Sbjct: 414 ALGATLTLPGIAAIVLLVGMSVDSNVLIFERIREELRL---GKTPHAALDSGYDKAFLTI 470

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + + + A I+   +  +G   +  FA+ ++ GI++   +S+ ++  ++   Y  RA   R
Sbjct: 471 MDSHVTALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSL-VSTKVIFDAYLERAHVKR 529

Query: 833 I 833
           +
Sbjct: 530 L 530


>gi|293363763|ref|ZP_06610505.1| putative protein-export membrane protein SecF [Mycoplasma
           alligatoris A21JP2]
 gi|292552684|gb|EFF41452.1| putative protein-export membrane protein SecF [Mycoplasma
           alligatoris A21JP2]
          Length = 851

 Score =  236 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 162/862 (18%), Positives = 342/862 (39%), Gaps = 74/862 (8%)

Query: 7   LVILYSMI-CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV--DED 63
           +++  ++I   + ++     ++ ++         P   I  G    GG  ++++V  D  
Sbjct: 2   VILSITLISTLLAIVFGSVFYVGKN---------PNRSIEYG----GGIEVLVQVKKDNQ 48

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +         S+ L   L             +   KI +S       +    +    +  
Sbjct: 49  NADKELTNKVSESLFERLTGGTGLTGTSVSSEGDGKIRIS-KSGNLTDAQRSEFESKV-- 105

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                     K +L  T      +  +               +   +  I     + +  
Sbjct: 106 --------ADKPILTMTDIDVKPLFKNGEFDRNGS-----LQIGSSKNWIPPFADNGAKY 152

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               + +  + +  + + + L     T     +        K   +  +      D  + 
Sbjct: 153 LVDHTGKDSVSIDLKDNDAILEWTKAT----EYISTRQEPGKNVILMWINIEELLDLAKN 208

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               + E SG +L       +    +       +    ++       N+ K         
Sbjct: 209 KFPREWEASGRNLYNFVHVNNKAVEEVPDPTPQNPDNKKQIR-----NVLKQAEFNAKDY 263

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +++   + QA+ +    I+GNFT   A  LA  +  G     L+I+    V +DL S + 
Sbjct: 264 LISEAGVFQALNTKSVLINGNFTQTEAKELANDINYGISKYDLSILSSVYVDSDLNSSAF 323

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A +    LI +FM++ YG  G ++  SI L + LTL + ++L    +  +IA ++
Sbjct: 324 NSAMLAGLIVFSLISIFMMINYGLLGALSTISIALYIFLTLLMFTVLRGEYSPATIAALI 383

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +GIG++VD+NI+  ER++++     S+  S     S ++STI D+N+T LI    LF+FG
Sbjct: 384 IGIGISVDANIITFERLKKDIYHGSSLKKSYKNSNSLSFSTIIDANVTTLIVAFTLFYFG 443

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMI------FIIRYKKMKSIDINPLSRFFLIP 535
              VRGF+I++ LSIL ++   +   R          ++     +  I    ++R     
Sbjct: 444 TKDVRGFSISLILSILFTLIVMLIFTRFTSSMIVNTGWMENKLWLLGIHKKYINRDNSNK 503

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLF---------THGLNYGIDFKGGIQLGVLAN 586
                 +++   W   +S+L  I +  +             G+   I+FKGG+ + V  +
Sbjct: 504 FYAKFDYVKQAKWFALVSLLLLIAAGIVFISIGTTSSSIWDGIVRNIEFKGGLNITVTGD 563

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-- 644
           +   +++     E ++   +   +     N    +  Q  D+ +    L ++  +     
Sbjct: 564 KSKFVNLSFDEAEKIKNYILENASIWNIHNPEEVINIQRVDNNSDNWALILLSTQDLSEN 623

Query: 645 ---------IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
                        +       +    +  L+   +  + I+ I +++Y  +R KW +++ 
Sbjct: 624 ITQITSGISNNFNNLTITNYNISTTEANRLLLNSLFAISIAFIGIVLYTLVRMKWTYSIA 683

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-- 753
           AI  L+ D+   + F  +  ++ +   +AA+L++IG+S+ND +V +DR+R+ M       
Sbjct: 684 AIIGLLHDMLVVVAFIVITRLQMSSIMIAALLSIIGFSINDTIVTFDRIREIMSTMKHDQ 743

Query: 754 ---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                  R + +++I+ET+ RS YT++    +++ +  +G +   SF I M FG+V+   
Sbjct: 744 VIEKNQIRKIANQAISETIKRSFYTTLTTISALIILLAFGNATDFSFNIVMLFGMVIGVY 803

Query: 811 SSIFIAAPILLFIYDWRAKNAR 832
           SSIFI   + + + ++R K  +
Sbjct: 804 SSIFICTRVWVALENFRQKGIK 825


>gi|260773395|ref|ZP_05882311.1| protein-export membrane protein SecF [Vibrio metschnikovii CIP
           69.14]
 gi|260612534|gb|EEX37737.1| protein-export membrane protein SecF [Vibrio metschnikovii CIP
           69.14]
          Length = 315

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 100/299 (33%), Positives = 163/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            + ++     I FMR   +   +S+L    SI  L T  LN+G+DF GG  + V    P 
Sbjct: 1   MYQILKAEKTIDFMRWSKFTFVLSLLMIGASIFTLSTKWLNWGLDFTGGTLIEVGFAEPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R  L+    GD + QNF   ++ +VRL+ + G    +T   +++           
Sbjct: 61  NLEKIRHALDERGFGDATVQNFGSARDVMVRLRPREG-VAGETLGNQILNAIKEGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + ++ S I +L+Y+ +RF+W  A GA+ +L  D+  TLG
Sbjct: 120 DMRRIEFVGPNVGDELAEAGGLAILASLICILLYVSMRFEWRLASGAVLSLAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +      S  ++++ SI +TL
Sbjct: 180 IFSLLQIEIDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKLRKGDS-AEVMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + V GG+ I  FA  +  GI V   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFVQGGANIHGFATALLLGITVGTYSSIYVASALALKLGITRE 297


>gi|189425068|ref|YP_001952245.1| preprotein translocase subunit SecD [Geobacter lovleyi SZ]
 gi|189421327|gb|ACD95725.1| protein-export membrane protein SecD [Geobacter lovleyi SZ]
          Length = 530

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 187/532 (35%), Positives = 285/532 (53%), Gaps = 20/532 (3%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           W + L +    +  +  +P   P+   D +   +PK++I LGLDL+GG+HLVLEV+    
Sbjct: 7   WRIALIAAFIVLSCIYLVPTLNPKLP-DWWKGMLPKDKIHLGLDLQGGTHLVLEVETAKA 65

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD-KVTLFLQGVNS 124
           V G L + + +L   L  + +    + +  +         +         V    +    
Sbjct: 66  VEGTLDLVATDLEDTLNSKNLRFKRISRTGSDKVAIVMYEKDTAAAVQKLVKEKYRDYEM 125

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                     +       I++ + + +I      A+ Q++E IR RIDQ G+SE  I R 
Sbjct: 126 I-------PTVEEGGMVGIALRMKEQDIQDRKDKAVAQALETIRNRIDQFGVSEPVIARQ 178

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-----------VRFL 233
           G ++I++QLPG +DP R   L+G TA++ F  V    S  G                   
Sbjct: 179 GINQIVVQLPGIKDPQRAIALIGRTARLEFKMVKEGVSPTGGAVPEDSEVLFEKHTDPVT 238

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +     +V  K  I+G  L  A    D + ++P V I F+ +GAR F +VT  N+GK 
Sbjct: 239 GATTETPLVVYKKALITGDLLTDAQVRIDSQFNQPYVGIEFNSLGARLFDQVTAANVGKR 298

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A+VLD  V +APVI + I  G AQISGNFT +TA  LA +LRAG+LP  + I++   VG
Sbjct: 299 FAIVLDSNVYSAPVIRERISGGSAQISGNFTEKTASDLAIVLRAGALPAPVKIIQNVTVG 358

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A LG DSI KG  A   G+ L++ FM V Y   G+VA+  + LN++  +  +S LGATLT
Sbjct: 359 ASLGKDSIDKGLMAGAIGVALVIGFMAVYYKLSGMVANLGMVLNILYLMGAMSALGATLT 418

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IA IVL +G++VDSN+++ ERIREE R  +S   +L+ G+ +A+ TI DS++TALI 
Sbjct: 419 LPGIAAIVLLVGMSVDSNVIIFERIREELRLGKSPKSALEAGYDKAFLTIMDSHVTALIT 478

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             VLF FG G V+GFA+++ L I+I++FT++   + +    +    +K + I
Sbjct: 479 AAVLFQFGTGPVKGFAVSLSLGIMINLFTSLMGTKVIFDLFLHKGNVKKMSI 530



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 32/161 (19%), Positives = 81/161 (50%), Gaps = 4/161 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
               VG  + ++ I KG++   I    ++ ++ + +K    + A   ++L+I   +G  +
Sbjct: 353 QNVTVGASLGKDSIDKGLMAGAIGVALVIGFMAVYYKLS-GMVANLGMVLNILYLMGAMS 411

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G    L  +AA++ L+G SV+  V++++R+R+ ++L     S +  ++   ++     
Sbjct: 412 ALGATLTLPGIAAIVLLVGMSVDSNVIIFERIREELRL---GKSPKSALEAGYDKAFLTI 468

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
           + + + A I+   +  +G   +  FA+ ++ GI++   +S+
Sbjct: 469 MDSHVTALITAAVLFQFGTGPVKGFAVSLSLGIMINLFTSL 509


>gi|156973362|ref|YP_001444269.1| preprotein translocase subunit SecF [Vibrio harveyi ATCC BAA-1116]
 gi|156524956|gb|ABU70042.1| hypothetical protein VIBHAR_01049 [Vibrio harveyi ATCC BAA-1116]
          Length = 315

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 162/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SI     SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAEGTIGFMRWSKVAFVFSICMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ L+S   GD + QNF   ++ +VRL+ +  D   +T   +++           
Sbjct: 61  NLQEIRAALDSKGFGDATVQNFGSARDVMVRLRPRD-DMSGETLGNQIIGAIKEGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  DI  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSMRFEWRLAAGAVMALAHDIIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D++D SI +TL
Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + + GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297


>gi|260771412|ref|ZP_05880337.1| protein-export membrane protein SecF [Vibrio furnissii CIP 102972]
 gi|260613538|gb|EEX38732.1| protein-export membrane protein SecF [Vibrio furnissii CIP 102972]
 gi|315180993|gb|ADT87907.1| preprotein translocase subunit SecF [Vibrio furnissii NCTC 11218]
          Length = 315

 Score =  235 bits (599), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 165/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR       +S+L    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAEKTIDFMRWSKVTFMLSLLMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +RS+LE+   GD + QNF   +  +VRL+ +  D   Q    ++++          
Sbjct: 61  NLEEIRSSLEAKGFGDATVQNFGSAREVMVRLRPRD-DMAGQVLGNQILEAIKDGTGKAV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +I S I +LIY+ +RF+W  A GA+ +L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAIIASLICILIYVSVRFEWRLAAGAVMSLAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +      S  ++I+ SI +TL
Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKLRKGEST-EIINSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + V GG+ I  FA  +  GI V   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFVQGGANIHGFATALLLGITVGTYSSIYVASALALKLGITRE 297


>gi|28897365|ref|NP_796970.1| preprotein translocase subunit SecF [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838079|ref|ZP_01990746.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AQ3810]
 gi|260364490|ref|ZP_05777111.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           K5030]
 gi|260876326|ref|ZP_05888681.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AN-5034]
 gi|260898597|ref|ZP_05907093.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           Peru-466]
 gi|260899303|ref|ZP_05907698.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AQ4037]
 gi|28805577|dbj|BAC58854.1| protein-export membrane protein SecF [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748546|gb|EDM59405.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AQ3810]
 gi|308086933|gb|EFO36628.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           Peru-466]
 gi|308092919|gb|EFO42614.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AN-5034]
 gi|308106636|gb|EFO44176.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AQ4037]
 gi|308114700|gb|EFO52240.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           K5030]
 gi|328472611|gb|EGF43474.1| preprotein translocase subunit SecF [Vibrio parahaemolyticus 10329]
          Length = 315

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 163/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++    +I FMR        SI     SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAEKSIGFMRWSKVAFVFSIFMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEKPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ L++   GD + QNF   ++ +VRL+ +  D   +T   +++           
Sbjct: 61  NLEEIRTALDAKGFGDATVQNFGSARDVMVRLRPRD-DVSGETLGNQIIGAIKEGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  DI  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSMRFEWRLAAGAVMALAHDIIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D++D SI +TL
Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKG-DPADIMDASITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + V GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297


>gi|85860049|ref|YP_462251.1| protein translocase subunit [Syntrophus aciditrophicus SB]
 gi|85723140|gb|ABC78083.1| protein translocase subunit [Syntrophus aciditrophicus SB]
          Length = 533

 Score =  235 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 195/536 (36%), Positives = 298/536 (55%), Gaps = 23/536 (4%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
                +   +  + +    P        + +   +PK+RI LGLDL+GG HLVLEVD D 
Sbjct: 6   RVRAFIALAVILVAVFYLFPTLTADLP-EFWKKNLPKDRIHLGLDLQGGMHLVLEVDADK 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVN 123
            +   L+  + +L+  L  + I    + +  ++ IT+   DS  +      +        
Sbjct: 65  AIEATLERTAVDLKETLMDKRIRFKRLERSTSQNITVELPDSASRSAFDKSLKDSY---- 120

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                    +       + +S+ +S+   D++   AIEQS+E IR R+DQ GI+E  I  
Sbjct: 121 ---PDLEVVSSETVEGIERVSLGVSERRKDEIRKLAIEQSLETIRNRVDQFGITEPEIVP 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237
            G  RILIQLPG +DP R + L+G TA + F  V   +S    + G      +       
Sbjct: 178 QGKDRILIQLPGIKDPGRAKNLIGKTALLEFKLVDEGHSIDEALKGNVPEGSAITYGWNV 237

Query: 238 --------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                      YL++ K  ++G  L  A      +  +P V ++F+  GA  F  +T +N
Sbjct: 238 DSQSGRRTEVPYLLKSKTLLTGDALENAQVKISDRFGEPHVALTFNSRGAADFERITGEN 297

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           + K LA+VLDG V +APVI + I  G+AQI+G+FT+E A  LA +LRAG+LP  + I+EE
Sbjct: 298 VKKRLAIVLDGVVHSAPVIQEKISGGQAQITGSFTMEEARDLAIVLRAGALPAPVKILEE 357

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG  LG DSI  G  A V   +L+VLFM+  Y   G+VAD ++ LN++L +  ++   
Sbjct: 358 RTVGPSLGQDSIEMGIWACVIAGILVVLFMVFYYRLSGMVADVALVLNLVLLMGAMAAFK 417

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP IAGIVL IG+AVD+N+L+ ERIREE R  ++   +++ G+S+A+ TI DSN+T
Sbjct: 418 ATLTLPGIAGIVLTIGMAVDANVLIFERIREELRTEKTPRAAVEAGYSKAFLTILDSNVT 477

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            L+A + LF FG G ++GFA+T+ + I++SMFTAI + R +  + +  +++KSI I
Sbjct: 478 TLVAALFLFGFGTGPIKGFAVTLTIGIVVSMFTAIFVTRIIFDYFVWNRRIKSISI 533



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 90/173 (52%), Gaps = 5/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I  GI   +I+ I +++++   ++    + A   L+L++   +G  A F   
Sbjct: 361 GPSLGQDSIEMGIWACVIAGILVVLFMVFYYRLS-GMVADVALVLNLVLLMGAMAAFKAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++++R+R+ ++   T  + R  ++   ++     + +++
Sbjct: 420 LTLPGIAGIVLTIGMAVDANVLIFERIREELR---TEKTPRAAVEAGYSKAFLTILDSNV 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAK 829
              ++ L +  +G   I  FA+ +  GIVV+  ++IF+   I   F+++ R K
Sbjct: 477 TTLVAALFLFGFGTGPIKGFAVTLTIGIVVSMFTAIFVTRIIFDYFVWNRRIK 529


>gi|77165813|ref|YP_344338.1| preprotein translocase subunit SecD [Nitrosococcus oceani ATCC
           19707]
 gi|254433081|ref|ZP_05046589.1| protein-export membrane protein SecD [Nitrosococcus oceani AFC27]
 gi|76884127|gb|ABA58808.1| SecD export membrane protein [Nitrosococcus oceani ATCC 19707]
 gi|207089414|gb|EDZ66685.1| protein-export membrane protein SecD [Nitrosococcus oceani AFC27]
          Length = 618

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 179/521 (34%), Positives = 285/521 (54%), Gaps = 36/521 (6%)

Query: 33  DRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
              P  +       ++LGLDLRGG H ++EVD +  V    + Y ++LRS L++  I   
Sbjct: 106 PATPDWLRAIGGLPMNLGLDLRGGVHFLMEVDMEAAVQQAEERYVEDLRSLLRENKIRYL 165

Query: 90  SM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
           S+ R     + + F + + +E     +      +  +     +           + I LS
Sbjct: 166 SIGRLGAGGVEIKFRNEQQREQAETLIHDEYFDLLLEPAEGERAP--------RLEIKLS 217

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
           +    ++   A++Q++  +R RI+++G++E TIQ+ G +RI++QLPG QD +R +++LG 
Sbjct: 218 EKEQREIQRLALQQNITTLRNRINELGVAEPTIQQQGENRIVVQLPGVQDTARAKEILGA 277

Query: 209 TAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           TA + F  V          +     G R   +  G   L++ +V ++G H+  A++  + 
Sbjct: 278 TATLEFRLVDTSHDVQRAVEGRVPVGSRLYHERGGAPILLKKRVILTGDHVTDASSGIEQ 337

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLT 304
           +   P V +S D  GAR F +VT +NIGKP+                    V      + 
Sbjct: 338 QGGSPAVFVSLDGQGARHFSQVTGENIGKPMAVVFIETKSEIRMEEGEPVKVRRRVPEVI 397

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                +   S + QI+G  + E A  LA +LRAG+L   ++IVEER +G  LG D+I KG
Sbjct: 398 NVATIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIVEERTIGPSLGQDNIDKG 457

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             +++ G  L+++FM + Y  +GLVA+ ++  N++L ++LLS+L ATLTLP IAGIVL +
Sbjct: 458 FQSVLIGFALVLVFMALYYRVFGLVANLALAANLVLVVSLLSMLQATLTLPGIAGIVLTV 517

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+ ERIREE R   S   S++ G++ A STI D+NIT LI  VVLF FG G 
Sbjct: 518 GMAVDANVLIFERIREELRNGSSPQASIEAGYANALSTIVDANITTLITAVVLFGFGTGP 577

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           ++GFA+T+ L IL SMFTAI   RA++  I   ++   + I
Sbjct: 578 IKGFAVTLSLGILTSMFTAIVGTRAVINLIYGRRRKVKLSI 618



 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 43/279 (15%), Positives = 105/279 (37%), Gaps = 4/279 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S    +        H      +  G     V      ++ +       ++       N  
Sbjct: 341 SPAVFVSLDGQGARHFSQVTGENIGKPMAVVFIETKSEIRMEEGEPVKVRRRVPEVINVA 400

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             ++ L +     G    +      +  +   +     I     +GP + ++ I KG   
Sbjct: 401 TIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIVEERTIGPSLGQDNIDKGFQS 460

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+I    +L+++ + ++  F L A   L  ++   +   ++      L  +A ++  +G 
Sbjct: 461 VLIGFALVLVFMALYYRV-FGLVANLALAANLVLVVSLLSMLQATLTLPGIAGIVLTVGM 519

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +V+  V++++R+R+ ++      S +  I+      L   V  ++   I+ + +  +G  
Sbjct: 520 AVDANVLIFERIREELR---NGSSPQASIEAGYANALSTIVDANITTLITAVVLFGFGTG 576

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            I  FA+ ++ GI+ +  ++I     ++  IY  R K  
Sbjct: 577 PIKGFAVTLSLGILTSMFTAIVGTRAVINLIYGRRRKVK 615


>gi|197105417|ref|YP_002130794.1| protein-export membrane protein SecD [Phenylobacterium zucineum
           HLK1]
 gi|196478837|gb|ACG78365.1| protein-export membrane protein SecD [Phenylobacterium zucineum
           HLK1]
          Length = 534

 Score =  235 bits (598), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 193/530 (36%), Positives = 309/530 (58%), Gaps = 9/530 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W V+L  +   +G L+A PN +P       P  +PK  ++LGLDL+GGS+L+LEVD +
Sbjct: 5   SRWKVLLVVLSVVLGALLAFPNVVPPETRASLPGFVPKQTLNLGLDLQGGSYLLLEVDTE 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 L    +++R+ L++  I    +  +   + +   D          +   L    
Sbjct: 65  ALRAERLTNTVEDVRTQLREAQIPFTGLGVVNGAVAVRITDPAQVREAQTLLRNTLGAPL 124

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +   V  +   + T  ++ I +      +    + A+EQS+EIIR+R+D++G  E TI R
Sbjct: 125 AGT-VGGRDLTVSTEADQRIRVTFVPEAMQAESARAVEQSIEIIRRRVDELGTREPTIVR 183

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-------VRFLRDS 236
            G++RI++Q PGE DP RL+ ++G TAK++F  V           G       V    D 
Sbjct: 184 QGTNRIVVQAPGESDPERLKNVIGQTAKLTFQMVDEAADLNEAAAGRVPPGSEVLPSDDG 243

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y+V+ +  ++G  L  A+A F P+T +P+V+  FD  GARRF + T  NIGK  A+
Sbjct: 244 AVPFYVVKRRAVVTGEMLTSASAAFHPQTGQPIVEFRFDGQGARRFGDATTQNIGKRFAI 303

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLD +V++AP IN AI  G   I GNFT E+A  LA +LRAG+LP  LN+ E+R V A+L
Sbjct: 304 VLDKKVISAPRINSAITGGSGYIEGNFTTESANDLAVLLRAGALPAPLNVEEQRTVSAEL 363

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLP 415
           G+D+I  G  + V   V +V FM++ YG  +G ++  ++ +N +L +A +SL  ATLTLP
Sbjct: 364 GADAIKAGQISTVVAFVSVVGFMLLAYGFLFGGISIIALLVNGLLIIAAMSLTQATLTLP 423

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAG++L + +AVD+N+L+ ER+R+E R  ++   ++D GFSRA +TI D+N+T L+A +
Sbjct: 424 GIAGLILTLAMAVDANVLIYERMRDEVRAGRTAIAAMDAGFSRAMTTIVDANLTTLLAAL 483

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           ++F FG G V+GFA T+ + ++ S+FTA+ I + ++    R  + K++ I
Sbjct: 484 LMFQFGAGPVKGFAWTLSIGVVTSVFTAVLITQVLLALWYRTTRPKTLPI 533



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 79/177 (44%), Gaps = 3/177 (1%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              V  ++  + I+ G +  +++ ++++ ++ + + + F   +I  L+++    +   +L
Sbjct: 356 QRTVSAELGADAIKAGQISTVVAFVSVVGFMLLAYGFLFGGISIIALLVNGLLIIAAMSL 415

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 L  +A ++  +  +V+  V++Y+RMR  ++      +    +D   +  +   V
Sbjct: 416 TQATLTLPGIAGLILTLAMAVDANVLIYERMRDEVRA---GRTAIAAMDAGFSRAMTTIV 472

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++   ++ L M  +G   +  FA  ++ G+V +  +++ I   +L   Y      
Sbjct: 473 DANLTTLLAALLMFQFGAGPVKGFAWTLSIGVVTSVFTAVLITQVLLALWYRTTRPK 529


>gi|253700407|ref|YP_003021596.1| preprotein translocase subunit SecD [Geobacter sp. M21]
 gi|251775257|gb|ACT17838.1| protein-export membrane protein SecD [Geobacter sp. M21]
          Length = 532

 Score =  234 bits (597), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 187/540 (34%), Positives = 283/540 (52%), Gaps = 23/540 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   W + L  +      +   P  +       +   +PK++I LGLDL+GG+HLV+ V
Sbjct: 1   MKGYTWRISLILLFIIASFVYLTPTLVDTLP-SWWSGLLPKDKIHLGLDLQGGTHLVMGV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119
           + +  V G L + + +L   L ++ +   ++ R   +K+ L+  D    +     +    
Sbjct: 60  ETEKAVEGSLDLIATDLEDSLTQQNLRYKNILRVGNDKVQLTLYDRVSADAAQALIKKKY 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                                  + I + +         A+ Q++E IR RIDQ G+SE 
Sbjct: 120 -------PDMQILPATDEGGFIGMQIRIDEKEAQLRKDRAVAQALETIRNRIDQFGVSEP 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS--- 236
            IQR G   I++QLPG +DP R   L+G TA++ F  V    +            D    
Sbjct: 173 VIQREGLTNIVVQLPGIKDPKRAIDLIGKTARLEFKLVDETINAATATASSIPADDELLY 232

Query: 237 -----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                           +V+ K  I+G  L  A    D + ++P V I F+  GAR F +V
Sbjct: 233 EKNTDPATGAVSETPIVVKKKAIITGDLLTDAQIRIDSQYNQPYVAIDFNSTGARLFDQV 292

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK  A+VLD  V +APVI + I  G AQISG+FT + A  LA +LRAGSLP  + 
Sbjct: 293 TAANVGKRFAIVLDSNVYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVK 352

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           I++   VG  LG DSI KG  A + G+ L+V FM + Y   G+VA+F + LN++  +  L
Sbjct: 353 ILQNVTVGPSLGKDSIRKGLMAGLIGVALVVSFMAIYYKLCGMVANFGMVLNILFLMGAL 412

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           S LGATLTLP IA IVL +G++VDSN+L+ ERIREE R  ++   ++D G+ +A+ TI D
Sbjct: 413 SALGATLTLPGIAAIVLLVGMSVDSNVLIFERIREELRLGKTPHAAVDSGYDKAFLTIMD 472

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           S++TALI   VLF FG G V+GFA+++ L I+I++FT++   R +    +    +K + I
Sbjct: 473 SHVTALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLVTTRVIFDAYLERANVKRLSI 532



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 35/169 (20%), Positives = 84/169 (49%), Gaps = 4/169 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ IRKG++  +I    ++ ++ I +K    + A   ++L+I   +G  +  G  
Sbjct: 360 GPSLGKDSIRKGLMAGLIGVALVVSFMAIYYKLC-GMVANFGMVLNILFLMGALSALGAT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +AA++ L+G SV+  V++++R+R+ ++L     +    +D   ++     + + +
Sbjct: 419 LTLPGIAAIVLLVGMSVDSNVLIFERIREELRL---GKTPHAAVDSGYDKAFLTIMDSHV 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            A I+   +  +G   +  FA+ ++ GI++   +S+     I     + 
Sbjct: 476 TALITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLVTTRVIFDAYLER 524


>gi|114328110|ref|YP_745267.1| preprotein translocase subunit SecD [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316284|gb|ABI62344.1| protein translocase subunit secD [Granulibacter bethesdensis
           CGDNIH1]
          Length = 526

 Score =  234 bits (597), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 189/526 (35%), Positives = 307/526 (58%), Gaps = 10/526 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +        ++C +G+L+ LPN + +         +P   + LGLDLRGGS+L++++D  
Sbjct: 5   SRLKTTTIYLVCLLGMLLCLPNLMARPAA-----WLPWRTVHLGLDLRGGSYLLMQIDMK 59

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKENIADKVTLFL-Q 120
             V   L+  SD  R  ++   I    ++     N+I LS  D          +   +  
Sbjct: 60  AVVRERLESLSDTARQAMRNAHIFYTGLKAEPDANRIVLSPRDPAQLNAAVAALGKAVEN 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V++    + +   L      +I+++L +  +    + A++QS+EI+R+RIDQ G+ +  
Sbjct: 120 EVSANGVREVEVKALEGAQAGQIALILPEAALHDRATAAVQQSIEIVRRRIDQTGVVDPN 179

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL-PNNSKKGFMFGVRFLRDSDGN 239
           I R G  RI++QLPG  DP R++ LLGTTAKM+FH V             +    +  G 
Sbjct: 180 IARQGEDRIVVQLPGVDDPQRIKDLLGTTAKMTFHMVDASATPAAVPPDDIALPEEGTGQ 239

Query: 240 QYLVEDKVEISGIHLNGATA-NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           + +V+ + ++ G  L  A       +     V  +F+ +GAR+  ++T  + G+  A+VL
Sbjct: 240 KLVVKRRADVDGADLTDARPVPNQQRAGAWSVSFTFNGVGARKVADITAAHQGERFAIVL 299

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D R+++APVI   IP G+ +I+GNFT +TA  LA +LRAG+LP  L++VEER+VG +LG+
Sbjct: 300 DNRIISAPVIQSVIPDGRGEITGNFTAKTAQDLAVLLRAGALPAPLSVVEERSVGPELGA 359

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           DSI  G  ++ AG VL++LFM + YG +G +A+ ++ +N+ + L  LSLL ATLTLP +A
Sbjct: 360 DSIRAGAYSLAAGFVLVILFMGLFYGLFGWMANLALLMNLFMLLGALSLLEATLTLPGMA 419

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GI+L +G+AVD+NIL+NERIREE +  +    +++ GF RA++T+ DSN+TAL+A V+LF
Sbjct: 420 GILLTLGMAVDANILINERIREETKAGRPPVAAMEAGFKRAWATVLDSNMTALLAHVMLF 479

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            FG G VRGFA+T+ + I  ++FT   + R +M+      +   + 
Sbjct: 480 VFGTGPVRGFAVTITVGIATTLFTNFMLARLLMVKWFARNRPAELP 525



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 77/174 (44%), Gaps = 4/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP++  + IR G   +    + +++++ + +   F   A   L++++   LG  +L  
Sbjct: 352 SVGPELGADSIRAGAYSLAAGFVLVILFMGLFYGL-FGWMANLALLMNLFMLLGALSLLE 410

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A +L  +G +V+  +++ +R+R+  K           ++          + +
Sbjct: 411 ATLTLPGMAGILLTLGMAVDANILINERIREETKA---GRPPVAAMEAGFKRAWATVLDS 467

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +M A ++ + + V+G   +  FA+ +  GI     ++  +A  +++  +     
Sbjct: 468 NMTALLAHVMLFVFGTGPVRGFAVTITVGIATTLFTNFMLARLLMVKWFARNRP 521


>gi|300022794|ref|YP_003755405.1| protein-export membrane protein SecD [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524615|gb|ADJ23084.1| protein-export membrane protein SecD [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 540

 Score =  234 bits (596), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 201/521 (38%), Positives = 319/521 (61%), Gaps = 11/521 (2%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W +I   + C  GLL+ALPNF P+  +  +PS MPK +++LGLDL+GG+HL+L +D+D+
Sbjct: 6   RWKIIATLLTCLAGLLVALPNFFPKETVQSWPSFMPKQQLTLGLDLQGGAHLLLAMDQDE 65

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVN 123
               ++    DE R  L+   IG   +      ++ +  A    +      +    Q + 
Sbjct: 66  IKKDWINNLRDEARKELRDAKIGFTGIGTQGLTQLVVKLAKPEEQAAALKALNKVRQPIG 125

Query: 124 SKLNVDPKKNLLVTTTEKEISIVL--SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + L      ++ V++  +  +IV+  S   + Q +++A   S+E I +R++ +G SESTI
Sbjct: 126 NALLGAGAYDVEVSSGTEPGTIVIKESDQGLRQRVANAASASIETINRRVNNLGTSESTI 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDS 236
            R G+ RILIQ PG +D + L++L+G TAK++FH+V P+ S           G +     
Sbjct: 186 VRQGADRILIQFPGLKDTTDLKKLIGETAKLTFHEVHPSMSGDEAKMTKVPTGFKIYPGD 245

Query: 237 DGNQ---YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            G     YL+ ++  + G  L  A   FD +  +PV++  F+++GAR+F   T+D++G+P
Sbjct: 246 KGESSGEYLLREQPVVQGADLADAQPGFDSRNGEPVINFRFNQIGARKFANFTKDHVGRP 305

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A+VLD +VL+APVI + I  G  QISG+FT+E    LA  LR+GSLP KL IVEER VG
Sbjct: 306 FAIVLDDKVLSAPVIREPILGGSGQISGSFTVEGTNTLAVQLRSGSLPTKLTIVEERTVG 365

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG+DSI  G  A V G + +V+  I+ YG +G+ A   + +++ILT+AL++++GA LT
Sbjct: 366 PSLGADSISAGKLAGVVGGIAVVILTILYYGTFGIFACVGLLVHLILTVALMTMIGAVLT 425

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAG+VLG+ +AVD+N+L+ ERIREE R  +    ++D GF RAY TI DS +T L  
Sbjct: 426 LPGIAGLVLGVAMAVDANVLIYERIREELRLGKMPVSAIDAGFQRAYVTILDSQLTTLAC 485

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            +++F+ G G +RGFA+T+ + IL S+F ++++VR ++ + 
Sbjct: 486 AIIMFWLGSGPIRGFAVTLTIGILTSIFASVTVVRLLISYW 526



 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 74/172 (43%), Gaps = 4/172 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I  G +  ++  IA++I   + +   F + A   L++ +  T+    + G  
Sbjct: 365 GPSLGADSISAGKLAGVVGGIAVVILTILYYG-TFGIFACVGLLVHLILTVALMTMIGAV 423

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +  +V+  V++Y+R+R+ ++L          ID          + + +
Sbjct: 424 LTLPGIAGLVLGVAMAVDANVLIYERIREELRL---GKMPVSAIDAGFQRAYVTILDSQL 480

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                 + M   G   I  FA+ +  GI+ +  +S+ +   ++ +    + K
Sbjct: 481 TTLACAIIMFWLGSGPIRGFAVTLTIGILTSIFASVTVVRLLISYWLRAQPK 532


>gi|325295267|ref|YP_004281781.1| protein-export membrane protein SecF [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065715|gb|ADY73722.1| protein-export membrane protein SecF [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 294

 Score =  234 bits (595), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 158/297 (53%), Gaps = 4/297 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICL-LFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 F+  R+    +S L    S     F  G  +GIDF GG  + V        +  
Sbjct: 1   MERKFDFIGKRYIAYFLSFLLIAGSWFYGAFIKGAKFGIDFTGGALVQVKIEDKNVNTET 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              L   ++  ++ QN +    FL++   +   +     V + +K+K       + I+  
Sbjct: 61  LRQLFKGKVEGVTVQNIETANEFLIKAPVKGDPNKTVESVTKTIKEKF---NGKAEIRRV 117

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E++GP + +EL  KGI+ +I + I +L+Y+  RF+  FA GA+  L  D   T G F   
Sbjct: 118 EMIGPTVGKELREKGIMALIYAMIGILLYVAWRFEAIFAFGAVLALFHDTLATTGIFMAV 177

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G EF+L  +AA+LT+IGYS+ND +VVYDR+R+NMK+   S  F +++++SIN+TL R++ 
Sbjct: 178 GREFSLPVIAALLTVIGYSINDTIVVYDRIRENMKVLLRSKPFEEIVNESINQTLSRTII 237

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           TS+  F  VL + ++GG VI  FA  +  GI+V   SSIFIA+ I++  Y    K  
Sbjct: 238 TSLTTFFVVLCLYIFGGGVINDFAFVLLVGIIVGTYSSIFIASAIVVDWYKRVKKVK 294


>gi|163736765|ref|ZP_02144184.1| protein-export membrane protein SecD [Phaeobacter gallaeciensis
           BS107]
 gi|161390635|gb|EDQ14985.1| protein-export membrane protein SecD [Phaeobacter gallaeciensis
           BS107]
          Length = 553

 Score =  234 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 207/547 (37%), Positives = 303/547 (55%), Gaps = 31/547 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43
           W  +L  ++C  GLL+ALPN                           +  ++PS MP + 
Sbjct: 7   WKRVLIWLVCVTGLLLALPNAFYTRVEQANDAAAEIITKGESPARLDVAGQWPSFMPSSL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100
           ++LGLDLRGG+HL+ EV   D     +     E+R  L+ E   V + R+ Q    +I L
Sbjct: 67  VNLGLDLRGGAHLLAEVKVADVYGARMDALWPEVRDALRPERGEVGTFRRQQAPEGQIRL 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
             +           V      + S          +   T   +++ LS+          +
Sbjct: 127 KISKPEGMARALAVVRGLANPITSLTGAGATDITVS-GTGDILTVELSEQEKLASDDRTV 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV--- 217
            Q++EIIR+RID++G  E TIQR GS RILIQ+PG    S L++++GTTA+++F+ V   
Sbjct: 186 RQALEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSASELKEIIGTTAQLTFNPVVGR 245

Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
               ++  G    V    D DG  Y VE    ++G  L  A  +FD    +P V   F+ 
Sbjct: 246 GTDADANAGVGNKVVPSLDEDGVFYTVEAAPVVTGEELVDAQPSFDQNG-RPAVSFRFNT 304

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR+F + T +NIG P A+VLD  V++APVI   IP G   I+GNFTIE +  +A +LR
Sbjct: 305 TGARKFGDYTAENIGSPFAIVLDEEVVSAPVIQSHIPGGSGIITGNFTIEESTNMAILLR 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  L  +EER +G +LG DSI  G  A +   V +++FM + YG +G+ A+ ++ L
Sbjct: 365 AGALPAGLEFLEERTIGPELGQDSIDAGKVATIVAFVGVLVFMALSYGLFGVFANIALIL 424

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N+ L    LSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++D G+
Sbjct: 425 NIALIFGALSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEGY 484

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           S+A S I D+NIT  I  V+LF  G G VRGFAIT+GL I+ S+FTAI + R +++    
Sbjct: 485 SKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFE 544

Query: 517 YKKMKSI 523
            ++ K+I
Sbjct: 545 RRRPKTI 551



 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G V  I++ + +L+++ + +   F + A   LIL+I    G  +L G
Sbjct: 379 TIGPELGQDSIDAGKVATIVAFVGVLVFMALSYGL-FGVFANIALILNIALIFGALSLIG 437

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K           ID+  ++ L   +  
Sbjct: 438 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELKA---GRGPARAIDEGYSKALSAILDA 494

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   I++  ++ R   
Sbjct: 495 NITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFERRRPK 549


>gi|78356861|ref|YP_388310.1| preprotein translocase subunit SecD [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219266|gb|ABB38615.1| protein-export membrane protein SecD [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 530

 Score =  234 bits (595), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 192/533 (36%), Positives = 297/533 (55%), Gaps = 20/533 (3%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W + L  ++  +GL   LP+  P          +P N++SLGLDL GG HL L VD D 
Sbjct: 6   RWRIALTLVVAVMGLAYTLPSI-PAFKSSPLQKILPDNKVSLGLDLMGGIHLTLGVDVDK 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQI-QNKITLSFADSRFKENIADKVTLFLQGVN 123
            +   L    ++LR   + EGI +   R +  +++         +  +   +    + + 
Sbjct: 65  ALENALSQTGNDLREIARDEGIFLMRPRVVAGDRLEFILLKKEQRGELDSLLKKQFERL- 123

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                      ++     + S+  S      + + A++Q+++ IR RIDQ G++E  I++
Sbjct: 124 -----TVSPPQVLNDGRVKYSLAFSSEYKKYLSNLALDQAVKTIRNRIDQFGVAEPDIRK 178

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN---- 239
              +RI +QLPG  DP R  Q++G TA + F  V  +        G+             
Sbjct: 179 QQDNRIQVQLPGLNDPERAIQIIGKTAHLEFKMVRDDVDPANVARGIVPPGTEIREMQER 238

Query: 240 -------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                    +V  +  ++G ++  A A+FD    +P V ++F++ GAR F  VT +N GK
Sbjct: 239 GASGASIPVVVNREAVMTGENIVDARASFDQFN-QPYVIMTFNDRGARMFELVTGENKGK 297

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            +A+VLDG+V +APVI + I  G+A I+G F+   A  LA +LRAG+LP  ++I+EER+V
Sbjct: 298 RMAIVLDGKVYSAPVIQEKIRGGRASITGRFSDAEAHDLALVLRAGALPAPVHILEERSV 357

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG  SI +G  A +AG VL+V+FM+V YG  GLVA+ ++   ++L LA L+  GATL
Sbjct: 358 GPSLGQQSIDQGVTAALAGGVLVVIFMVVYYGFAGLVANVALSFTLVLILAGLAGFGATL 417

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAGI+L +G+AVD+N+L+ ERIREE RK  +   ++  G+SRA  TI D+NIT +I
Sbjct: 418 TLPGIAGIILTLGMAVDANVLIFERIREELRKGLTPRAAIQEGYSRATLTIVDANITTII 477

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           A V+L+ FG G +RGFA+T+ L IL SMFTAI + R +M      ++ + + I
Sbjct: 478 AAVILYQFGTGPIRGFAVTLSLGILASMFTAIFVSRVLMDIWSLKRQGRKLSI 530



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++ I +G+   +   + ++I++ + + +   L A   L   +   L   A FG
Sbjct: 356 SVGPSLGQQSIDQGVTAALAGGVLVVIFMVVYYGF-AGLVANVALSFTLVLILAGLAGFG 414

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ ++     ++ R  I +  +      V  
Sbjct: 415 ATLTLPGIAGIILTLGMAVDANVLIFERIREELR---KGLTPRAAIQEGYSRATLTIVDA 471

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   I+ + +  +G   I  FA+ ++ GI+ +  ++IF++  ++      R    
Sbjct: 472 NITTIIAAVILYQFGTGPIRGFAVTLSLGILASMFTAIFVSRVLMDIWSLKRQGRK 527


>gi|148263780|ref|YP_001230486.1| preprotein translocase subunit SecD [Geobacter uraniireducens Rf4]
 gi|146397280|gb|ABQ25913.1| protein-export membrane protein SecD [Geobacter uraniireducens Rf4]
          Length = 533

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 193/535 (36%), Positives = 285/535 (53%), Gaps = 23/535 (4%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           W + L      I  L   P  +       +   +PK++I LGLDL+GG+HLV+EV+    
Sbjct: 7   WRISLIVAFLFISFLYLTPTLVSPLP-SWWKGFLPKDKIHLGLDLQGGTHLVMEVETQKA 65

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           V G L + S +L   L  + I    + +   +++ L   D    +N+   V         
Sbjct: 66  VEGSLDLISTDLEDTLNAQNIRFKRVAKVGGDRVQLVLYDRGSADNVQKLVKKKY----- 120

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                    L        + + +++         A++Q++E IR RIDQ G+SE  IQR 
Sbjct: 121 --PDLELLPLFDEGGFVNMQLRINEKEAQVRKDKAVQQALETIRNRIDQFGVSEPIIQRE 178

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------- 237
           G   I++QLPG +DP R  +L+G TA++ F  V  N +            D         
Sbjct: 179 GISHIVVQLPGIKDPKRAIELIGKTARLEFKLVDENVNAVTATPSSIPEDDEILVEKKTD 238

Query: 238 -------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                      +V+ K  I+G  L  A    D + ++P V I F+  GAR F +VT  N+
Sbjct: 239 PATGAVSETPLVVKRKAMITGDLLTDAQVRIDSQYNQPYVAIEFNSTGARLFDQVTAANV 298

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           GK  A+VLD  + +APVI + I  G AQISG+FT + A  L  +LRAGSLP  + I++  
Sbjct: 299 GKRFAIVLDNNIYSAPVIRERISGGSAQISGSFTEKEASDLGIVLRAGSLPAPVKIIQNV 358

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG  LG DSI KG  A + G+ L+V+FM + Y   GLVA+F + LN+I  +  LS LGA
Sbjct: 359 TVGPSLGQDSINKGLIAGLIGVALVVVFMTIYYKLSGLVANFGMVLNIIFLMGSLSALGA 418

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IA IVL IG++VDSN+L+ ERIREE R  ++   S+D G+ +A+ TI DS++T 
Sbjct: 419 TLTLPGIAAIVLLIGMSVDSNVLIFERIREELRLGKTPMASIDAGYDKAFLTIMDSHVTT 478

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LI   VLF FG G V+GFA+++ L I+I++FT++   R +    +   ++K + I
Sbjct: 479 LITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLLATRVVFDLFLDRVRVKRLSI 533



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 91/176 (51%), Gaps = 5/176 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I KG++  +I    +++++ I +K    L A   ++L+I   +G  +  G  
Sbjct: 361 GPSLGQDSINKGLIAGLIGVALVVVFMTIYYKLS-GLVANFGMVLNIIFLMGSLSALGAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +AA++ LIG SV+  V++++R+R+ ++L     +    ID   ++     + + +
Sbjct: 420 LTLPGIAAIVLLIGMSVDSNVLIFERIREELRL---GKTPMASIDAGYDKAFLTIMDSHV 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              I+   +  +G   +  FA+ ++ GI++   +S+ +A  ++  ++  R +  R+
Sbjct: 477 TTLITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSL-LATRVVFDLFLDRVRVKRL 531


>gi|330830090|ref|YP_004393042.1| protein-export membrane protein SecD [Aeromonas veronii B565]
 gi|328805226|gb|AEB50425.1| Protein-export membrane protein SecD [Aeromonas veronii B565]
          Length = 617

 Score =  233 bits (594), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 172/530 (32%), Positives = 287/530 (54%), Gaps = 35/530 (6%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N  P +    +  A+    + LGLDLRGG H ++EVD  + +    +    + RS
Sbjct: 99  FITALNLAPSTP--AWLEAIGAAPLKLGLDLRGGVHFLMEVDMAEALTKQQEQMVQDFRS 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+ + I    +R++ +++ + F D   +E     +           N D          
Sbjct: 157 ELRTQKIRYSGVRRVGDQVQVIFRDEADQERAVSHLRRQ--------NPDLTFTTEQKGD 208

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           E  +   LS+  I +V  +A+EQ++ IIR R++++G++E  +Q+ G+ RI+++LPG QD 
Sbjct: 209 EFILLAGLSEAKIKEVKKYALEQNITIIRNRVNELGVAEPLVQQQGAERIVVELPGIQDT 268

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHL 254
           +R +++LG TA + FH V      +    G          D +G   +++ +V ++G H+
Sbjct: 269 ARAKEILGATATLEFHMVDETADIQAAADGRVPPSSKVYNDRNGRPVVLQKRVILTGDHI 328

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV------- 307
            GA + FD  + +P V+I  D  G  +    T+DN+GK +A V                 
Sbjct: 329 VGAQSGFDEYS-RPQVNIKLDGQGGNKMANFTKDNVGKGMATVFIEYKPVGQPGPDGKRK 387

Query: 308 -----------INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                        Q+    + +I+G      A  LA +LRAG+L   + IVEER +G  L
Sbjct: 388 FRKQEEVINVATIQSRLGSQFRITGIDNANEAHNLALLLRAGALIAPIQIVEERTIGPSL 447

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415
           G  +I  G  AI   +++IVLFM + Y  +G VA+ ++ +N++L + ++S++  AT+TLP
Sbjct: 448 GQQNIDSGMEAIGWAMLVIVLFMGIYYRAFGWVANLALCMNLVLIVGIMSMIPGATMTLP 507

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVD+N+L+ ERIREE R  + V  ++ +GF RA+STI DSN+T+LI  V
Sbjct: 508 GIAGIVLTLGMAVDANVLIYERIREEIRNGRGVQQAIHLGFDRAFSTIADSNVTSLITCV 567

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +LF  G GA++GFA+T+G+ +  SMFTAI++ RA++      +++  + I
Sbjct: 568 ILFGIGTGAIKGFALTLGIGLTASMFTAITVSRAIINLAWGGRRIDKLPI 617



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 86/205 (41%), Gaps = 6/205 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A       +  +   ++    I     +GP + ++ I  G+  +  + + +++++ I 
Sbjct: 414 DNANEAHNLALLLRAGALIAPIQIVEERTIGPSLGQQNIDSGMEAIGWAMLVIVLFMGIY 473

Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           ++  F   A   L +++   +G  ++  G    L  +A ++  +G +V+  V++Y+R+R+
Sbjct: 474 YR-AFGWVANLALCMNLVLIVGIMSMIPGATMTLPGIAGIVLTLGMAVDANVLIYERIRE 532

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++        +  I    +        +++ + I+ + +   G   I  FA+ +  G+ 
Sbjct: 533 EIR---NGRGVQQAIHLGFDRAFSTIADSNVTSLITCVILFGIGTGAIKGFALTLGIGLT 589

Query: 807 VAASSSIFIAAPILLF-IYDWRAKN 830
            +  ++I ++  I+       R   
Sbjct: 590 ASMFTAITVSRAIINLAWGGRRIDK 614



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  IG L A PN   +    +  SA     + L              D
Sbjct: 4   RYPLWKYLMVILVIAIGFLYAAPNLYGEDPALQV-SASRGAEVKL--------------D 48

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             D V   L+     ++    + G            I + F ++  +    D V   L
Sbjct: 49  TLDLVKETLEAAKIPVKHAAFEHGF-----------ILIRFKNTEDQLKARDIVANKL 95


>gi|260221944|emb|CBA31014.1| Protein-export membrane protein secD [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 627

 Score =  233 bits (594), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 163/515 (31%), Positives = 275/515 (53%), Gaps = 21/515 (4%)

Query: 19  LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78
             I   N L +S    + +A+  + + LGLDLRGG H +L+VD    +    +  + ++R
Sbjct: 104 AYIVALNLLSRSP--AWLTALHASPMYLGLDLRGGVHFMLQVDMQAALTKRAESLAGDIR 161

Query: 79  SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT 138
           + L+++ +    + +    + + F D+   +     +             D +       
Sbjct: 162 TVLREKNVRHSGISRNAQTVEVRFRDAATADAAKRIIQDQF--------ADLETVSSTDG 213

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
            + ++   +   +   +   A++Q++  +  RI+++G++E  IQ+ G  RI++QLPG QD
Sbjct: 214 ADVKLVASIKPVSAKTIQEQALKQNITTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQD 273

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISG 251
            ++ + +LG TA +    V      +    G   +        D +G   +V+ +V ++G
Sbjct: 274 TAKAKDILGRTATLEVRLVDEGTEARSAETGTGPVPFGSERYLDREGRPVIVKKQVILTG 333

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPV 307
            +L  A   FD +T +P V++S D  GAR F +VTR+NI K +         G V+TAPV
Sbjct: 334 ENLTDAQPGFDSQTQEPTVNLSLDAKGARIFRDVTRENINKRMAILLFEKGKGEVVTAPV 393

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           I   I  G+ QISG  T   A   A +LRAGSL   + I+EER +G  LG+++I KG  +
Sbjct: 394 IRSEISGGRVQISGRMTTVEAADTALLLRAGSLAAPMEIIEERTIGPSLGAENIAKGFQS 453

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           +  G   + +FM V Y  +G+++  ++  N++L +A+LS+L ATLTLP +A + L +G+A
Sbjct: 454 VSWGFTAVAIFMCVYYMLFGMISSIALAFNLLLLVAVLSMLQATLTLPGMAAMALVLGMA 513

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           +D+N+L+NER+REE R   S   ++  G+ RA++TI DSN+T LIA + L  FG G VRG
Sbjct: 514 IDANVLINERVREELRNGASPQAAIHAGYDRAWATIIDSNVTTLIAGLALLAFGSGPVRG 573

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           FA+   L IL SMF+ +   R ++      +K   
Sbjct: 574 FAVVHCLGILTSMFSGVFFSRGVVNLWYGRQKKLK 608



 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 83/212 (39%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  E I KG   V     A+ 
Sbjct: 403 VQISGRMTTVEAADTALLLRAGSLAAPMEIIEERTIGPSLGAENIAKGFQSVSWGFTAVA 462

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++ + +   F + +   L  ++   +   ++      L  +AA+  ++G +++  V++ 
Sbjct: 463 IFMCVYY-MLFGMISSIALAFNLLLLVAVLSMLQATLTLPGMAAMALVLGMAIDANVLIN 521

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      S +  I    +      + +++   I+ L +  +G   +  FA+  
Sbjct: 522 ERVREELR---NGASPQAAIHAGYDRAWATIIDSNVTTLIAGLALLAFGSGPVRGFAVVH 578

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S +F +  ++   Y  + K   +
Sbjct: 579 CLGILTSMFSGVFFSRGVVNLWYGRQKKLKTV 610



 Score = 44.3 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 31/120 (25%), Gaps = 25/120 (20%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   +  L ALPN   +S                           ++V 
Sbjct: 4   RYPVWKYAIILVALVVSGLYALPNLFGESPA-------------------------VQVS 38

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                          +   LK  G+   ++      +   FAD+  +    D +   +  
Sbjct: 39  AAKSSVKVDTAVLARVEQTLKDAGLTADAVALEGTSVKARFADTDTQLKAKDAIQKAINP 98


>gi|146276508|ref|YP_001166667.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554749|gb|ABP69362.1| protein-export membrane protein SecD [Rhodobacter sphaeroides ATCC
           17025]
          Length = 554

 Score =  233 bits (593), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 195/553 (35%), Positives = 309/553 (55%), Gaps = 32/553 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLP------------------------QSMLDRFP 36
           +    W  +L   IC + +L A PNFL                            +  +P
Sbjct: 2   LHFPVWKRVLIWGICALAILYAAPNFLYGRVESHNDAVAAIEKAGGTATPEQAEAVALWP 61

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI-- 94
             +P + ++LGLDLRGG+HL+ EV  +D     +     E+R  L+     V S+R+   
Sbjct: 62  DWLPSSIVNLGLDLRGGAHLLAEVRVEDVYEARMDGLWPEVRDALRGLRDQVGSIRRQTA 121

Query: 95  -QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
              ++ ++ +         D      Q V S   +  + ++ V++    + I L+     
Sbjct: 122 PAGELRIAISRPEGMPAALDAARKLAQPVISFTGMG-QSDIEVSSQNDVLVIRLTDAERT 180

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
            + S  ++QS+EIIR+R+D++G  E TIQR G  RILIQ+PG    + L+ L+GTTAK++
Sbjct: 181 AMDSRTVQQSLEIIRRRVDEVGTREPTIQRQGEDRILIQVPGIGSAAELKSLIGTTAKLT 240

Query: 214 FHKVLPNNSKKGFMFGV---RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           FH VL   ++              +  G  Y++E    ++G  L  A  +FD    +P V
Sbjct: 241 FHPVLSRTAEAPPSASGDLVLPASNEQGIYYVLERAPVVTGEELVDAQPSFDQNN-RPAV 299

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
              F+  GAR F + T  NIGKP A+VLD  V++APVI   I  G   I+GNF++E +  
Sbjct: 300 SFRFNPSGARLFGDYTAQNIGKPFAIVLDDEVISAPVIQAHIAGGSGIITGNFSVEESTE 359

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +LRAG+LP ++  +EER +G +LG DSI  G  A + G++ +V FMI  YG +G++A
Sbjct: 360 LAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVAFMIASYGWFGVLA 419

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
           + ++ +N++  LALLS++GATLTLP IAGIVL IG+AVD+N+L+ ERIREE R+ +    
Sbjct: 420 NIALAINMMAILALLSVIGATLTLPGIAGIVLTIGVAVDANVLIFERIREELRQGKMPAR 479

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           ++++GF +A+S I D+N T  +  V++F  G G VRGFA+T+ + I  S+FTA+ + R +
Sbjct: 480 AIELGFQKAFSAILDANATTFLVAVIMFLVGAGPVRGFAVTLTIGIFTSVFTAVYVTRIL 539

Query: 511 MIFIIRYKKMKSI 523
           +     +++ ++I
Sbjct: 540 VATWFAWRRPRAI 552



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G+   +      V  +   +    T      +GP++ ++ I  G    I+  IA++ 
Sbjct: 347 IITGNFSVEESTELAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVA 406

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++   + W F + A   L +++   L   ++ G    L  +A ++  IG +V+  V++++
Sbjct: 407 FMIASYGW-FGVLANIALAINMMAILALLSVIGATLTLPGIAGIVLTIGVAVDANVLIFE 465

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ ++           I+    +     +  +   F+  + M + G   +  FA+ + 
Sbjct: 466 RIREELRQ---GKMPARAIELGFQKAFSAILDANATTFLVAVIMFLVGAGPVRGFAVTLT 522

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            GI  +  +++++   ++   + WR   A
Sbjct: 523 IGIFTSVFTAVYVTRILVATWFAWRRPRA 551


>gi|269965156|ref|ZP_06179290.1| protein export protein SecF [Vibrio alginolyticus 40B]
 gi|269830142|gb|EEZ84369.1| protein export protein SecF [Vibrio alginolyticus 40B]
          Length = 315

 Score =  233 bits (593), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 162/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SI+    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAEKTIGFMRWSKVAFVFSIIMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ L+S   GD + QNF   +  +VRL+ +  D   +T   +++           
Sbjct: 61  NLEEIRAALDSKGFGDATVQNFGSAREVMVRLRPRD-DVSGETLGNQIIGAIKDGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +L+Y+ +RF+W  A GA+  L  DI  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILLYVSMRFEWRLAAGAVMALAHDIIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D++D SI +TL
Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + + GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297


>gi|222056531|ref|YP_002538893.1| protein-export membrane protein SecD [Geobacter sp. FRC-32]
 gi|221565820|gb|ACM21792.1| protein-export membrane protein SecD [Geobacter sp. FRC-32]
          Length = 532

 Score =  233 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 188/535 (35%), Positives = 284/535 (53%), Gaps = 24/535 (4%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           W + L      I  L   P  +P+     +   +PK++I LGLDL+GGSHLV+EV+    
Sbjct: 7   WRISLIVGFLLISFLYMTPTLVPKLP--SWWGVLPKDKIHLGLDLQGGSHLVMEVETQKA 64

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           V G L + S +L   L  + I    + R   +++ L   D    + +   +         
Sbjct: 65  VEGSLDLISTDLEDSLNAQNIRFKRVGRIGSDRVQLVLYDRGSADTVQKLIKKKY----- 119

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                    L        + + +++         A++Q++E IR RIDQ G+SE  IQR 
Sbjct: 120 --PDLELLPLFDEGGFVNLQLRINEKEAQVRKDKAVQQALETIRNRIDQFGVSEPVIQRE 177

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------- 237
           G + +++QLPG +DP R  +L+G TA++ F  V  N +            D         
Sbjct: 178 GINHVVVQLPGIKDPKRAIELIGKTARLEFKLVDENVNAVTATPSTIPEDDEILYEKKTD 237

Query: 238 -------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                      +V+ K  I+G  L  A    D + ++P V I F+  GAR F +VT  N+
Sbjct: 238 PATGAVSETPLVVKRKAMITGDLLTDAQVRIDSQYNQPYVAIEFNSTGARLFDQVTAANV 297

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
            K  A+VLD  + +APVI + I  G AQISG+FT + A  L  +LRAGSLP  + I++  
Sbjct: 298 NKRFAIVLDNNIYSAPVIRERISGGSAQISGSFTEKEASDLGIVLRAGSLPAPVKIIQNV 357

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG  LG DSI KG  A + G+ L++ FM V Y   GLVA+  + LN++  +  L+ LGA
Sbjct: 358 TVGPSLGQDSINKGLIAGLIGVALVICFMAVYYKLSGLVANMGMVLNIVYLMGALAALGA 417

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IA IVL +G++VDSN+L+ ERIREE R  ++   +LD G+ +A+ T+ DS++T 
Sbjct: 418 TLTLPGIAAIVLLVGMSVDSNVLIFERIREELRLGKTAKAALDAGYDKAFLTVMDSHVTT 477

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LI   VLF FG G V+GFA+++ L I+I++FT++   R +    +  K +K + I
Sbjct: 478 LITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSLLATRVIFDLFLERKNVKRLSI 532



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/181 (20%), Positives = 91/181 (50%), Gaps = 5/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
               VGP + ++ I KG++  +I    ++ ++ + +K    L A   ++L+I   +G  A
Sbjct: 355 QNVTVGPSLGQDSINKGLIAGLIGVALVICFMAVYYKLS-GLVANMGMVLNIVYLMGALA 413

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G    L  +AA++ L+G SV+  V++++R+R+ ++L     + +  +D   ++     
Sbjct: 414 ALGATLTLPGIAAIVLLVGMSVDSNVLIFERIREELRL---GKTAKAALDAGYDKAFLTV 470

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + + +   I+   +  +G   +  FA+ ++ GI++   +S+ +A  ++  ++  R    R
Sbjct: 471 MDSHVTTLITAAVLFQFGTGPVKGFAVSLSLGIIINLFTSL-LATRVIFDLFLERKNVKR 529

Query: 833 I 833
           +
Sbjct: 530 L 530


>gi|294083976|ref|YP_003550733.1| protein-export membrane protein SecD [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663548|gb|ADE38649.1| protein-export membrane protein SecD [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 527

 Score =  233 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 202/533 (37%), Positives = 304/533 (57%), Gaps = 29/533 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ-------SMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           W  +L   +  +G+  ALPN  P        S ++     +P   I+LGLDL+GGSHL+L
Sbjct: 7   WKKLLVLFVILLGVFFALPNLAPTQNDNQSDSTVESVFGFLPGKHINLGLDLQGGSHLLL 66

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD D      L    + +R   + + I    ++     + ++  D+   +     +   
Sbjct: 67  RVDMDIVEQERLDSIGETIRQEFRNDKIRFADLKVDGKAVHVTIRDADDADKAEAILNEL 126

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
             G+N            V +      I  S+  + ++ S+ I QS+EIIR+R+D  G  E
Sbjct: 127 ATGLN------------VASNALVYVISFSETGLTELQSNTIAQSIEIIRRRLDPEGTKE 174

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-- 236
             IQR G  R+L+QLPG  DP  +++LLG TAK++F  V    + +  +   R    S  
Sbjct: 175 PVIQRQGLDRVLVQLPGVDDPEAVKRLLGRTAKLTFQLVDMRITPQEAVERGRVPPGSIL 234

Query: 237 ------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                 DG  +++E +V +SG  L  ATA+FD    +P V    D  GA+RF  VT  NI
Sbjct: 235 LPSDSEDGRNFVIEKRVMVSGEMLENATASFDQNN-QPAVSFQLDSAGAKRFGRVTGANI 293

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           G+P A+VLDG+V++AP I      G  QI+GNFT+     L+ +LRAG+LP  L ++EER
Sbjct: 294 GRPFAIVLDGKVVSAPTIQS-QIFGSGQITGNFTVAETNELSLVLRAGALPAPLIVMEER 352

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
           ++G  LG+DSI  G  A + GL L++++M + YG +G++AD ++ +NVIL +A LS L A
Sbjct: 353 SIGPGLGADSIEAGKIAAIVGLCLVIVYMFLSYGTFGILADMALLVNVILIVAALSALQA 412

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAGIVL +G+AVD+N+L+ ERIREE ++ +SV  ++D G+ RA STI DSN+T 
Sbjct: 413 TLTLPGIAGIVLTMGMAVDANVLIFERIREELKRGRSVMAAIDGGYQRAISTIVDSNLTT 472

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           L A   L+ FG G ++GFA+T+G+ I  SMFTA+ + R  ++  +  KK   +
Sbjct: 473 LFAASFLYIFGSGPIKGFAVTLGIGIATSMFTAVMVTRLFIVLWLERKKPNEL 525



 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 79/179 (44%), Gaps = 4/179 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +GP +  + I  G +  I+    +++Y+++ +   F + A   L++++   +   
Sbjct: 349 MEERSIGPGLGADSIEAGKIAAIVGLCLVIVYMFLSYG-TFGILADMALLVNVILIVAAL 407

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +       L  +A ++  +G +V+  V++++R+R+ +K      S    ID      +  
Sbjct: 408 SALQATLTLPGIAGIVLTMGMAVDANVLIFERIREELK---RGRSVMAAIDGGYQRAIST 464

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            V +++    +   + ++G   I  FA+ +  GI  +  +++ +    ++   + +  N
Sbjct: 465 IVDSNLTTLFAASFLYIFGSGPIKGFAVTLGIGIATSMFTAVMVTRLFIVLWLERKKPN 523


>gi|254228674|ref|ZP_04922098.1| protein-export membrane protein SecF [Vibrio sp. Ex25]
 gi|262395133|ref|YP_003286987.1| protein-export membrane protein SecF [Vibrio sp. Ex25]
 gi|151938853|gb|EDN57687.1| protein-export membrane protein SecF [Vibrio sp. Ex25]
 gi|262338727|gb|ACY52522.1| protein-export membrane protein SecF [Vibrio sp. Ex25]
 gi|324039570|dbj|BAJ78590.1| protein-export membrane protein F-1 [Vibrio alginolyticus]
          Length = 315

 Score =  233 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 100/299 (33%), Positives = 161/299 (53%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SI     SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAEKTIGFMRWSKVAFVFSIFMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEKPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ L++   GD + QNF   +  +VRL+ +  D   +T   +++           
Sbjct: 61  NLEKIRTALDAKGFGDATVQNFGSAREVMVRLRPRD-DVSGETLGNQIIGAIKDGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +L+Y+ +RF+W  A GA+  L  DI  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILLYVSMRFEWRLAAGAVMALAHDIIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D++D SI +TL
Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-ADIMDASITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + + GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297


>gi|269962425|ref|ZP_06176775.1| protein export protein SecF [Vibrio harveyi 1DA3]
 gi|269832921|gb|EEZ87030.1| protein export protein SecF [Vibrio harveyi 1DA3]
          Length = 315

 Score =  233 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 164/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SI+    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAENTIGFMRWSKVAFVFSIVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ L+S   GD + QNF   ++ +VRL+ +  D   +T   +++           
Sbjct: 61  NLEEIRAALDSKGFGDATVQNFGSARDVMVRLRPRD-DMSGETLGNQIIGAIKEGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  DI  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSMRFEWRLAAGAVMALAHDIIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D++D SI +TL
Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + + GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297


>gi|153835380|ref|ZP_01988047.1| protein-export membrane protein SecF [Vibrio harveyi HY01]
 gi|148868102|gb|EDL67268.1| protein-export membrane protein SecF [Vibrio harveyi HY01]
          Length = 315

 Score =  233 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 162/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SI     SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAENTIGFMRWSKVAFVFSIFMIAASIFTLSTKWLNWGLDFTGGTLIEVGFQQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ L+S   GD + QNF   ++ +VRL+ +  D   +T   +++           
Sbjct: 61  NLEEIRAALDSKGFGDATVQNFGSARDVMVRLRPRD-DMSGETLGNQIISAIKEGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  DI  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSMRFEWRLAAGAVMALAHDIIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D++D SI +TL
Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + + GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297


>gi|91225154|ref|ZP_01260376.1| protein export protein SecF [Vibrio alginolyticus 12G01]
 gi|91190097|gb|EAS76368.1| protein export protein SecF [Vibrio alginolyticus 12G01]
          Length = 315

 Score =  233 bits (592), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 162/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SI+    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAEKTIGFMRWSKVAFVFSIIMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ L+S   GD + QNF   +  +VRL+ +  D   +T   +++           
Sbjct: 61  NLEEIRAALDSKGFGDATVQNFGSAREIMVRLRPRD-DVSGETLGNQIIGAIKDGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +L+Y+ +RF+W  A GA+  L  DI  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILLYVSMRFEWRLAAGAVMALAHDIIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D++D SI +TL
Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + + GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297


>gi|254455574|ref|ZP_05069003.1| protein-export membrane protein SecF [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082576|gb|EDZ60002.1| protein-export membrane protein SecF [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 296

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 103/290 (35%), Positives = 171/290 (58%), Gaps = 5/290 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRSNL 598
           I F +        S L  I S+ LL   GLN+GIDFKGG  + + +    +++S +R   
Sbjct: 2   IAFNKYYNHFNIFSSLLIIFSLVLLIFKGLNFGIDFKGGTLIELRSTDAKINVSSLRDKF 61

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
             + +GD+S + F  +K++L++ + +         +   + K           +  E VG
Sbjct: 62  SQMDLGDVSVKKFGNDKDYLIKFENKDNKKNIIEEIKNNLDKSF---GNNFNFRRVENVG 118

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           PK+S EL++ G++ + +S  AML YIWIRF+W F+LGAI  L  D+  TLG F+LF +E 
Sbjct: 119 PKVSSELLKSGVIAISLSLAAMLFYIWIRFEWQFSLGAILALFHDVIVTLGVFSLFSLEI 178

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           NL+ +AAVLT++GYS+ND VV++DR+R+N++ Y + I   +L + SINETL R++ TS  
Sbjct: 179 NLSIIAAVLTIVGYSMNDTVVIFDRVRENLRKY-SDIKIFELTNISINETLSRTIITSAT 237

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +++L +  +GG ++  F++ M  G++    SSI+IA  +L+ +   + 
Sbjct: 238 TLLALLAIYFFGGEILKGFSLAMILGVIFGTYSSIYIANTVLVRLRVSQK 287


>gi|89053575|ref|YP_509026.1| preprotein translocase subunit SecD [Jannaschia sp. CCS1]
 gi|88863124|gb|ABD54001.1| protein-export membrane protein SecD [Jannaschia sp. CCS1]
          Length = 556

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 197/553 (35%), Positives = 305/553 (55%), Gaps = 30/553 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSM-----------------------LDRFPS 37
           ++      +L  +   +GL  A+PNF   ++                       +  +PS
Sbjct: 2   LQIPLLNRLLIILTVLVGLSFAMPNFFYGTVERHNDALAEIERTGAQTPEQVADVAAWPS 61

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
            +P   ++LGLDLRGG+HL+ EV  +D     +     E+R  L+     V ++R+I  +
Sbjct: 62  YLPATLVNLGLDLRGGAHLLAEVQVEDVYVQRMDSLWPEVRDALRGLRDTVGTIRRIDAE 121

Query: 98  ---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
              + +  +           V    Q V S      +  L V+     I++ LS      
Sbjct: 122 PGLLQVRISQPEGMAAALAAVRELGQPVVSITGGFGESTLDVSGVGDIITVRLSDAEQAA 181

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
                ++QS+EI+R+R+D+ G  E TIQR G+ RILIQ+PG      L++L+GTTA+++F
Sbjct: 182 TNDRTLQQSIEIVRRRVDEAGTREPTIQRQGADRILIQVPGIGSAQELKELIGTTARLTF 241

Query: 215 HKVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           H V+   S        R       D  G  Y++E+   +SG  L  +   F+ ++  P+V
Sbjct: 242 HPVVGRASGPDQDTESRQIILPSIDEGGGYYILEETPVVSGDDLVDSQPGFEQQSGNPIV 301

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
              F+  GAR F + T  N+G P A+VLD  V++APVI  AI  G  QISG FT+E++  
Sbjct: 302 SFRFNPSGARDFGDYTAANVGAPFAIVLDNEVISAPVIRSAITGGAGQISGRFTVESSTE 361

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +LRAG+LP ++  +EER +G +LG+DS+  G  A +     +++FMI  YG +G+ A
Sbjct: 362 LAILLRAGALPAEMTFLEERTIGPELGADSVQAGQTAALIAFAAVLIFMIASYGLFGVFA 421

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ LNV L   +LSL+GATLTLP IAGIVL IG+AVD+N+LV ERIREE +  +    
Sbjct: 422 SIALVLNVGLIFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELKTAKGPAR 481

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           ++++G+ RA S I D+NIT  I   +LF  G G VRGF++T+G+ I+ S+FTAI + R +
Sbjct: 482 AIELGYERALSAIIDANITTFIIATILFVLGSGPVRGFSVTLGIGIVTSVFTAIYVTRLL 541

Query: 511 MIFIIRYKKMKSI 523
           ++F    ++ K+I
Sbjct: 542 LVFWFERRRPKTI 554



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 87/184 (47%), Gaps = 4/184 (2%)

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
              T      +GP++  + ++ G    +I+  A+LI++   +   F + A   L+L++  
Sbjct: 373 AEMTFLEERTIGPELGADSVQAGQTAALIAFAAVLIFMIASYGL-FGVFASIALVLNVGL 431

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             G  +L G    L  +A ++  IG +V+  V+V++R+R+ +K   T+      I+    
Sbjct: 432 IFGVLSLIGATLTLPGIAGIVLTIGMAVDANVLVFERIREELK---TAKGPARAIELGYE 488

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             L   +  ++  FI    + V G   +  F++ +  GIV +  ++I++   +L+F ++ 
Sbjct: 489 RALSAIIDANITTFIIATILFVLGSGPVRGFSVTLGIGIVTSVFTAIYVTRLLLVFWFER 548

Query: 827 RAKN 830
           R   
Sbjct: 549 RRPK 552


>gi|330685047|gb|EGG96719.1| export membrane protein SecF [Staphylococcus epidermidis VCU121]
          Length = 436

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 107/422 (25%), Positives = 210/422 (49%), Gaps = 22/422 (5%)

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +AVD+NI++ ERI++E R  +++  +       ++ TIFDSN+T +IA  VLFFFG  +V
Sbjct: 1   MAVDANIIMYERIKDELRIGRTLKQAYSKANKSSFLTIFDSNLTTVIAAAVLFFFGESSV 60

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD--------- 536
           +GFA  + L IL+   TA+ + R ++  ++     K        +     D         
Sbjct: 61  KGFATMLLLGILMIFVTAVFLSRLLLSLLVYSNLFKKKYWLFGVKKSDRHDISEGKDVHD 120

Query: 537 ----CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    F++     + +SIL  +  + +L+   LN GIDF  G ++ + +   +  S
Sbjct: 121 LKTSFEKWNFVKLAKPLISLSILIVVVGLVILYIFKLNLGIDFSAGTRVDLQSKESLSQS 180

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   ++ + +     Q              Q        ++ + +K +           
Sbjct: 181 KVEKVVKDVGLEPDQIQINGSGNKNATVQFKQDLSQAKDNQLSDKMKSEFGNS------P 234

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
               V P I +EL +  ++ ++ +A+ ++IY+ +RF+W   L ++  L+ D+   +  F+
Sbjct: 235 QINTVSPLIGQELAKNAMLALVYAALGIIIYVSLRFEWRMGLSSVLALLHDVFIIVAVFS 294

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT---TSISFRDLIDKSINETL 769
           L  +E +LT +AA+LT++GYS+ND +V +DR+R+N+       ++    D++++SI +T+
Sbjct: 295 LLRLEVDLTFIAAILTIVGYSINDTIVTFDRVRENLHKIKVITSTEQIDDIVNRSIRQTM 354

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            RS+ T +   + V+ + ++G   I +F++ +  G++    SSIFIA P+   +   + K
Sbjct: 355 TRSINTVLTVVVVVVAILLFGAPTIFNFSLALLIGLISGVFSSIFIAVPLWGIMKKRQLK 414

Query: 830 NA 831
            +
Sbjct: 415 KS 416


>gi|256822295|ref|YP_003146258.1| protein-export membrane protein SecF [Kangiella koreensis DSM
           16069]
 gi|256795834|gb|ACV26490.1| protein-export membrane protein SecF [Kangiella koreensis DSM
           16069]
          Length = 312

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 165/298 (55%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              + +     F++ R +   +S +  I SI   FT GLNYG+DF GG  + V   +  D
Sbjct: 1   MSFLNEDTNYDFLKVRKFAFALSAILIIASIVSFFTKGLNYGLDFTGGTLVEVSYEQDAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  L  + I     QNF   K   +R+  Q     AQ  V ++V   +       T
Sbjct: 61  LQKVRQQLTEIDINGAVVQNFGSAKVVQIRMPQQDHIENAQ--VSDVVLATLASDGSKVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            ++   VGP +  EL  +G + +I++ I ++IY+ +RF+W F++G++  L  D+   +GF
Sbjct: 119 KRDQSFVGPVVGEELKEQGGLAMIVALICIMIYVALRFEWKFSVGSVAALAHDVIIVVGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F++  +EF+LT +AA+L +IGYS+ND +VV+DR+R+N  L     +  ++I+ SIN TL 
Sbjct: 179 FSITSVEFDLTVLAALLAVIGYSLNDTIVVFDRIRENFLLMRK-ATPEEVINNSINLTLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R+V TS+   + +L +  +GG  I SFA  +  GI+V   SS+FIA+P  L +   + 
Sbjct: 238 RTVMTSLTTMLVLLALFFFGGQTIHSFAEALIVGILVGTYSSVFIASPTTLALGITKE 295


>gi|154253477|ref|YP_001414301.1| protein-export membrane protein SecF [Parvibaculum lavamentivorans
           DS-1]
 gi|154157427|gb|ABS64644.1| protein-export membrane protein SecF [Parvibaculum lavamentivorans
           DS-1]
          Length = 316

 Score =  232 bits (591), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 190/300 (63%), Gaps = 3/300 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    LIPD    QF++ R+  VG+S+L  + S  LL T GLN+GIDF+GGI + +  + 
Sbjct: 1   MRHLKLIPDDTNFQFVKWRYIAVGLSLLVMVVSSALLITRGLNFGIDFEGGIVIEISTDG 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P D+S +R+++  L +G++  Q F    + L+R+Q        +    E+V K   ++  
Sbjct: 61  PADISQLRADIGGLDLGEVQIQEFGQADDVLIRVQS--PRDGGEEASQEVVNKIRGQLGD 118

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
               +  E+VGP++S EL++ GI+ V+IS   ML+YIW RF+W F+LG++  L+ D+  T
Sbjct: 119 TVEYRRVEVVGPQVSGELVQDGILAVVISIALMLVYIWFRFEWQFSLGSVIALVHDVMAT 178

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG F +  +EFNLT++AA+LT++GYS+ND V+V+DR+R+N++ Y   +    LID SIN+
Sbjct: 179 LGLFCILQLEFNLTSIAAILTIVGYSMNDTVIVFDRVRENLRKY-KKMDLGALIDLSINQ 237

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R+V TS    +++L + ++GG V+  F   M FGI +   SSIFIAAP+LL +   R
Sbjct: 238 TLSRTVMTSGTTLLALLALFIFGGEVLRDFTFAMIFGIFIGTYSSIFIAAPVLLTVGVTR 297


>gi|319941718|ref|ZP_08016040.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Sutterella wadsworthensis 3_1_45B]
 gi|319804651|gb|EFW01518.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Sutterella wadsworthensis 3_1_45B]
          Length = 631

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 181/506 (35%), Positives = 283/506 (55%), Gaps = 20/506 (3%)

Query: 30  SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++   P  +       + LGLDLRGG H +L+VD    +       + +LR+ L+ + I
Sbjct: 115 NLVPNTPRWLLSINALPMYLGLDLRGGVHFLLQVDMRAALTKRADAIAADLRTQLRDKRI 174

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +I N + +SFA +  ++   D +      +   L    K   ++          
Sbjct: 175 RHTGISRIGNDVEVSFATAEERDRANDLLRNTQPDLLLTLPEASKAPYVIHAE------- 227

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LSQ  I  V ++A++Q++  +  RI+++G++E  I + G+ RI++QLPG QD ++ + +L
Sbjct: 228 LSQKAIQNVQNYALKQNISTLHNRINELGVAEPVIAQQGADRIVVQLPGVQDTAKAKDIL 287

Query: 207 GTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           G TA +    V  +             FG     D DG   LV+ +V ++G +LN A   
Sbjct: 288 GRTATLEVRLVDDSPEALAQLAQGTVPFGDERFTDRDGRPILVKRRVILTGENLNDAQPG 347

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSGK 316
           FD +T +P V++  D  GAR F EVTR+N+G+ +         G V+TAPVI Q I  G+
Sbjct: 348 FDSQTQEPTVNLELDNRGARIFQEVTRENVGRRMAILLFEKGKGEVVTAPVIRQEIGGGR 407

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
            QISG  T   A   A +LRAGSL   + IVEER +G  LG  +I  G  + + G ++I 
Sbjct: 408 VQISGQMTTMEATDTALVLRAGSLAAPMEIVEERLIGPSLGEANIEAGFRSTLYGFIVIA 467

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           +FM V Y  +G+V+  S+  NV++ +A+LS+L ATLTLP IA I L +G+AVDSN+L+NE
Sbjct: 468 VFMAVYYQVFGVVSAISLICNVMMLIAILSMLQATLTLPGIAAIALTLGMAVDSNVLINE 527

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           R+REE R  +    ++  G+ RA++TI DSN+T+LIA + L  FG G VRGFA+   L I
Sbjct: 528 RVREELRIGRQPQTAISEGYERAFATILDSNVTSLIAGLALLIFGSGPVRGFAVVHCLGI 587

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKS 522
             S+FT++ + RA++  I   +K  +
Sbjct: 588 GTSIFTSVIVSRALINLIYGRQKKLT 613



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 86/208 (41%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I    ++GP +    I  G    +   I + 
Sbjct: 408 VQISGQMTTMEATDTALVLRAGSLAAPMEIVEERLIGPSLGEANIEAGFRSTLYGFIVIA 467

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + ++  F + +  +LI ++   +   ++      L  +AA+   +G +V+  V++ 
Sbjct: 468 VFMAVYYQV-FGVVSAISLICNVMMLIAILSMLQATLTLPGIAAIALTLGMAVDSNVLIN 526

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ +++       +  I +         + +++ + I+ L + ++G   +  FA+  
Sbjct: 527 ERVREELRI---GRQPQTAISEGYERAFATILDSNVTSLIAGLALLIFGSGPVRGFAVVH 583

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI  +  +S+ ++  ++  IY  + K
Sbjct: 584 CLGIGTSIFTSVIVSRALINLIYGRQKK 611


>gi|114771851|ref|ZP_01449244.1| protein-export membrane protein SecD [alpha proteobacterium
           HTCC2255]
 gi|114547667|gb|EAU50558.1| protein-export membrane protein SecD [alpha proteobacterium
           HTCC2255]
          Length = 553

 Score =  232 bits (590), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 202/552 (36%), Positives = 315/552 (57%), Gaps = 31/552 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSA 38
           ++ +    IL  ++  +G L A+PN                          S    +PS 
Sbjct: 2   LQFSLTKKILIWVVVVLGFLFAMPNGFYNRVESVNDARMQLENGNDTPEIISQASNWPSF 61

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK- 97
           +P   ++LGLDLRGG+HL+  V  D      +  Y  E+R+ L+KE   + ++R+I  + 
Sbjct: 62  LPSALVNLGLDLRGGAHLLARVRVDQVYEARMDAYWPEVRNALRKERASIGTIRRIDGEN 121

Query: 98  --ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
             + +  ++     +  + V+   + V + L+    ++++VT+ E  I I LS+      
Sbjct: 122 YDLRVRISEPSQINHAVEVVSALARPVTT-LSGAGSRDIVVTSIEDTIIIELSEAEKIAT 180

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            +  ++QS+EIIR+R+D+ G  E TIQR G+ R+LIQ+PG      L+ ++G TAK++FH
Sbjct: 181 DTRTMDQSLEIIRRRVDEAGTREPTIQRQGTDRVLIQVPGIGSAEELKSIIGKTAKLTFH 240

Query: 216 KVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           KV+   S        R      +D +G  Y++E    I+G HL  A   FD    +P V 
Sbjct: 241 KVIQRTSNSDERVKNRQILLPAQDEEGVFYVLEKTPVINGDHLTDAQPAFDQNN-RPAVS 299

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
              +  GAR F + T +NIG P A+VLD  V++AP I   I  G   I+G F +E   +L
Sbjct: 300 FRLNTTGARIFGQYTAENIGTPFAIVLDQEVVSAPTIQSHISGGSGIITGQFGVEETTLL 359

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +  LRAG+LP +L  ++E  VG DLG DSI  GT A +   + +++FM + YG +G+ A+
Sbjct: 360 SIQLRAGALPAELEYLQESTVGPDLGQDSIDAGTLACIVAFIAVLVFMSLSYGLFGIFAN 419

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ +NV L  A+LS++  TLTLP IAGIVL +G+AVD+N+LV ERIREE +K ++   +
Sbjct: 420 VALIINVALIFAVLSVISGTLTLPGIAGIVLTVGMAVDANVLVFERIREELKKAKNPRKA 479

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           +++G+ RA+S I D+NIT LIA V+L  FG G V+GFAIT+G+ I+ S+FTAI + R ++
Sbjct: 480 IELGYERAFSAIIDANITTLIAAVILLVFGSGPVKGFAITLGIGIVTSVFTAIWVTRLLI 539

Query: 512 IFIIRYKKMKSI 523
              I  K+ KSI
Sbjct: 540 SIWIERKRPKSI 551



 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 86/181 (47%), Gaps = 4/181 (2%)

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                 VGP + ++ I  G +  I++ IA+L+++ + +   F + A   LI+++      
Sbjct: 374 YLQESTVGPDLGQDSIDAGTLACIVAFIAVLVFMSLSYGL-FGIFANVALIINVALIFAV 432

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            ++      L  +A ++  +G +V+  V+V++R+R+ +K    + + R  I+        
Sbjct: 433 LSVISGTLTLPGIAGIVLTVGMAVDANVLVFERIREELK---KAKNPRKAIELGYERAFS 489

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  ++   I+ + + V+G   +  FAI +  GIV +  ++I++   ++    + +   
Sbjct: 490 AIIDANITTLIAAVILLVFGSGPVKGFAITLGIGIVTSVFTAIWVTRLLISIWIERKRPK 549

Query: 831 A 831
           +
Sbjct: 550 S 550


>gi|91205515|ref|YP_537870.1| preprotein translocase subunit SecD [Rickettsia bellii RML369-C]
 gi|157827231|ref|YP_001496295.1| preprotein translocase subunit SecD [Rickettsia bellii OSU 85-389]
 gi|122425641|sp|Q1RIN3|SECD_RICBR RecName: Full=Protein-export membrane protein secD
 gi|91069059|gb|ABE04781.1| Protein-export membrane protein secD [Rickettsia bellii RML369-C]
 gi|157802535|gb|ABV79258.1| preprotein translocase subunit SecD [Rickettsia bellii OSU 85-389]
          Length = 514

 Score =  232 bits (590), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 198/528 (37%), Positives = 309/528 (58%), Gaps = 22/528 (4%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N   W + L  +     ++ ALPNF            +P + ++LGLDLRGG+HL+L+
Sbjct: 1   MQNLPKWKIFLSIICTIFAVICALPNFTQVKS-----KYLPHDSVNLGLDLRGGAHLLLD 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           VD D ++N  ++  +D LR   +++ IG  ++   QN I L        + +   ++   
Sbjct: 56  VDFDTYLNDTMENLADTLRKSFREDKIGYKNLLVKQNNIQLELRSQEELKPLKRIISK-- 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         + V   +  I +  S++ + ++++  ++QS+EI+R R+D  G  E 
Sbjct: 114 ----------IDPEINVEANDNRIKLSYSESRLSELLNKVVDQSIEIVRMRVDSTGTKEP 163

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF----LRD 235
            +Q+ G   IL+Q+PGE+DP+ L+ +LG TAK+ FH V  N + +  + G       L  
Sbjct: 164 ILQKQGDRHILLQVPGEEDPTYLKNILGKTAKLIFHLVDENANVEEAVKGHVPMGSMLVQ 223

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            D   YLV  K  I G       A    +  + VV  SF+ +G++ F EVT++N+GK LA
Sbjct: 224 GDRMGYLVVKKKAILGGDSLTTAAASFDQNSQAVVSFSFNSLGSKLFGEVTKNNVGKHLA 283

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD ++L+AP INQ I  G   ISG+FT+E+A  LA +LRAGSLP  L I+EER++G +
Sbjct: 284 IVLDNKLLSAPTINQPIMGGSGIISGDFTVESANELALLLRAGSLPAPLKIIEERSIGPN 343

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG+DSI  G  A + G   + +FM+  YG  GL A+ ++ L ++  LALLSL  ATLTLP
Sbjct: 344 LGADSIESGKKAGIIGFAAVCIFMVWSYGLLGLFANIALSLAMLYVLALLSLFQATLTLP 403

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI DSN+T LI   
Sbjct: 404 GIAGIILTMGMAVDANVLIYERIKEELNKGTSNLYAIKTGFESAFATILDSNLTTLIVAF 463

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           +L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y K K +
Sbjct: 464 LLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFKPKKL 511



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 76/178 (42%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    II   A+ I++   +     L A   L L +   L   +LF 
Sbjct: 339 SIGPNLGADSIESGKKAGIIGFAAVCIFMVWSYGL-LGLFANIALSLAMLYVLALLSLFQ 397

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +       S    I           + +
Sbjct: 398 ATLTLPGIAGIILTMGMAVDANVLIYERIKEEL---NKGTSNLYAIKTGFESAFATILDS 454

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   +L+ I+    K  ++
Sbjct: 455 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITK-LLIDIWVKYFKPKKL 511


>gi|114767461|ref|ZP_01446248.1| protein-export membrane protein SecD [Pelagibaca bermudensis
           HTCC2601]
 gi|114540471|gb|EAU43552.1| protein-export membrane protein SecD [Roseovarius sp. HTCC2601]
          Length = 562

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 190/556 (34%), Positives = 302/556 (54%), Gaps = 40/556 (7%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ-------------------------------SMLDR 34
           W  +L   +   GL++A PN                                   +    
Sbjct: 7   WKRVLIWALVVAGLVLAAPNLFYNRVESHNDAVKAIEAQGSTAEREAQGSTAEREAQASV 66

Query: 35  FPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI 94
           +P+ +P + ++LGLDLRGG+HL+ EV   D     ++    E+R  L+     V ++R  
Sbjct: 67  WPTWLPSDLVNLGLDLRGGAHLLAEVRLSDVYAARMEALWPEVRDVLRDARDEVGTIRLQ 126

Query: 95  QNK---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
            +    + +  ++        + V    Q V S          +      +I + LS+  
Sbjct: 127 PSDPGILRVRISNPDGMARALELVRGLAQPVVSLTGAGATDLQVA-GDGSDIIVTLSEAE 185

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
                   ++QS+EIIR+RID++G  E TIQR GS RILIQ+PG    + L++++GTTA+
Sbjct: 186 QRATDERTMQQSLEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKEIIGTTAQ 245

Query: 212 MSFHKVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           ++F  V+   S  G   GV        + +G  Y++E    ++G  L  A  ++D    +
Sbjct: 246 LTFQPVVGRASSAGESAGVGNEVLPSLNEEGVFYILETAPVVTGEELVDAQPSYDQNG-R 304

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
           P V+  F+  GAR+F + T +NIG P A+VLD  V++APVI   IP G   I+GNF I  
Sbjct: 305 PAVNFRFNPSGARKFGDYTAENIGSPFAIVLDDEVISAPVIQSHIPGGSGIITGNFDIAE 364

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           +  LA +LRAG+LP  +  +EER +G +LG DSI  G  A       +++FM + YG +G
Sbjct: 365 STNLAVLLRAGALPAGMEFLEERTIGPELGQDSIDAGKLATGVAFAAVLIFMFLSYGLFG 424

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           L A+ ++ LN+ L + +LS +GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  + 
Sbjct: 425 LFANVALILNIGLIMGILSAIGATLTLPGIAGIVLTVGMAVDANVLIFERIREEIKSARG 484

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
              ++++G+S+A S I D+NIT +I  ++L+  G G VRGFAIT+G+ I+ S+FTAI + 
Sbjct: 485 PARAIELGYSKALSAIVDANITTVITAIILYVMGSGPVRGFAITLGIGIVTSVFTAIWVT 544

Query: 508 RAMMIFIIRYKKMKSI 523
           R +++     ++ K++
Sbjct: 545 RLLIVMWFERRRPKTL 560



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 95/208 (45%), Gaps = 4/208 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G+          V  +   +           +GP++ ++ I  G +   ++  A+LI
Sbjct: 355 IITGNFDIAESTNLAVLLRAGALPAGMEFLEERTIGPELGQDSIDAGKLATGVAFAAVLI 414

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++++ +   F L A   LIL+I   +G  +  G    L  +A ++  +G +V+  V++++
Sbjct: 415 FMFLSYGL-FGLFANVALILNIGLIMGILSAIGATLTLPGIAGIVLTVGMAVDANVLIFE 473

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   ++      I+   ++ L   V  ++   I+ + + V G   +  FAI + 
Sbjct: 474 RIREEIK---SARGPARAIELGYSKALSAIVDANITTVITAIILYVMGSGPVRGFAITLG 530

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830
            GIV +  ++I++   +++  ++ R   
Sbjct: 531 IGIVTSVFTAIWVTRLLIVMWFERRRPK 558


>gi|303247263|ref|ZP_07333537.1| protein-export membrane protein SecD [Desulfovibrio fructosovorans
           JJ]
 gi|302491422|gb|EFL51310.1| protein-export membrane protein SecD [Desulfovibrio fructosovorans
           JJ]
          Length = 534

 Score =  231 bits (589), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 180/531 (33%), Positives = 285/531 (53%), Gaps = 23/531 (4%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W + + S++  +GL+  LP+  P          +P + I+LGLDL+GG HL L VD D 
Sbjct: 6   RWRLAVISLVAFLGLIYMLPSVGPVKQ-SFLGKFLPDDVINLGLDLKGGIHLTLGVDVDK 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIG--VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            +   L     ++R   K +GI             + L  A    ++   D +      +
Sbjct: 65  ALANSLVQMGRDVRDQAKDDGIAVLRPQTTPDGKHLQLVLATGDKRQAFDDMLANHFNVL 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                            +    +  +     ++    ++Q+++ IR RID+ G++E  I+
Sbjct: 125 V------VDNVESGPDGKFTYKLSFTPRYKSELTRMTVDQAVKTIRNRIDEFGVAEPDIR 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG---- 238
           +   +RI IQLPG  DP R  +L+G TA + F  V  N        G+    +       
Sbjct: 179 KQSDNRIQIQLPGLHDPERAIKLIGKTAHLEFKVVDDNADLDKAQKGILPPGEELSVLRH 238

Query: 239 ---------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                       ++     ++G H++ A ANF  + ++  V +SF   G+R+F  VT +N
Sbjct: 239 RNPDGTYLERPIVLRSDAVMTGEHISDARANF-DRNNQAYVALSFTPSGSRQFERVTGEN 297

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           + K LA+VLDG+V +AP I + I  G+A I+G+FT E A  LA +LRAG+LP  ++I+E+
Sbjct: 298 VKKRLAIVLDGKVYSAPTIQEKISGGRASITGHFTTEEARDLAIVLRAGALPAPVSILEQ 357

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R+VG  LG +SI +G  + + G V+++ FM++ YG  G VAD ++  N++L +A L+  G
Sbjct: 358 RSVGPSLGQESIEQGVYSALVGGVIVIGFMVLYYGLAGFVADMALLFNMVLIMAGLAGFG 417

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP IAGI+L IG+AVD+N+++ ERIREE R   S   ++D G+ RA  TIFD+N+T
Sbjct: 418 ATLTLPGIAGIILTIGMAVDANVIIFERIREELRLGLSARKAVDTGYDRATLTIFDANVT 477

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            +IA +VL+ FG G +RGFA+T+ L  + SMFTAI   R +    +  +  
Sbjct: 478 TIIAAMVLYQFGTGPIRGFAVTLILGTVASMFTAIFFTRFLFDLWLSRRPP 528



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 80/178 (44%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VGP + +E I +G+   ++  + ++ ++ + +       A   L+ ++   +   A 
Sbjct: 357 QRSVGPSLGQESIEQGVYSALVGGVIVIGFMVLYYGL-AGFVADMALLFNMVLIMAGLAG 415

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  IG +V+  V++++R+R+ ++L    +S R  +D   +       
Sbjct: 416 FGATLTLPGIAGIILTIGMAVDANVIIFERIREELRL---GLSARKAVDTGYDRATLTIF 472

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             ++   I+ + +  +G   I  FA+ +  G V +  ++IF    +       R  +A
Sbjct: 473 DANVTTIIAAMVLYQFGTGPIRGFAVTLILGTVASMFTAIFFTRFLFDLWLSRRPPDA 530


>gi|292670699|ref|ZP_06604125.1| protein-export membrane protein SecF [Selenomonas noxia ATCC 43541]
 gi|292647645|gb|EFF65617.1| protein-export membrane protein SecF [Selenomonas noxia ATCC 43541]
          Length = 306

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 142/295 (48%), Gaps = 1/295 (0%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R     IS++  I  +  +   G N+GIDF GG  + +   +PV L+ +RS
Sbjct: 1   MPKFDIAGHRKIWFLISLVLIIPGVICMGMRGFNFGIDFTGGTIIDMRFEQPVTLAEIRS 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L    +   + Q    E                +    + V   +T+ V   T+   E 
Sbjct: 61  SLAKYDLDGSTIQLSGAETGVESSENVMIRTVDLEETQRKEVMASLTQDVGPYTVLREEK 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  I  ELI   ++ ++IS   +++Y+  RF+W F + A+  LI DI   L  F+    
Sbjct: 121 VGATIGSELITNAVLALVISWALIILYVAYRFEWRFGVAAVLALIHDIVIVLAVFSFTQR 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775
           + + + +AA+LT++GYS+ND +V++DR+R+N+KL+        +L+++SI +TL RS+YT
Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDVNELVNRSIYQTLTRSLYT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                 +   +  +GG     FA  +  G      SSIFIA+P  + + D   + 
Sbjct: 241 VFTVLFTTFALYWFGGETTKDFAFALLIGFASGCYSSIFIASPFWIVLRDRTERR 295


>gi|257439810|ref|ZP_05615565.1| protein-export membrane protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257197719|gb|EEU96003.1| protein-export membrane protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 781

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 161/763 (21%), Positives = 291/763 (38%), Gaps = 60/763 (7%)

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           V +    V        +        +  +++  + ++        ++ +  +I  R+  +
Sbjct: 28  VAVKYGDVTKTYIKGAQDIRFGVDIKGGVNVTFAPSDNYDATDDQLDAAQLVIENRLVGL 87

Query: 175 GISESTIQRLGSHRILIQLPGEQ------DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
            +++  +        LI     Q      DP    + +G+TA ++F        K     
Sbjct: 88  NVTDYELYVDYDSDRLILEFPWQSGETDFDPEAAIEEIGSTAYLTFR-------KGSSAD 140

Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
           G   L  S       +                F+ +  K           A      +  
Sbjct: 141 GELILDGSMVESAAAQYGPVSGSTSEYYVALKFNDEGAKAF-------GDATTELYQSSG 193

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
            I   L             I        +  S  FT E    +A  + +G+LP  L +  
Sbjct: 194 TISIWLDDQNVSTATVNAAITDGAAIITSSASNPFTQEDVVKMARQINSGALPFALTVDS 253

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
              V   LG +S+     A +    LIV+ M +LY   G +A  ++   V  TLA +S  
Sbjct: 254 YSTVSPSLGENSLSAMVLAGLIAYALIVVLMTLLYRLPGFLACIALAGQVAATLAFVSGY 313

Query: 409 G-----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
                  TLTLP IAGI+L IG+ VD+N++  ERI+EE    +S+  +L  GF+R  + I
Sbjct: 314 FPVFESFTLTLPGIAGIILAIGMGVDANVITAERIKEELNNGKSLDGALKSGFARGLTPI 373

Query: 464 FDSNITALIATVVLFFFGGGAV----------------------RGFAITMGLSILISMF 501
            D N+T +I  +VL    G +                         F  T+   +L++  
Sbjct: 374 IDGNVTIVIVAIVLMGAFGPSDGLFAKALHFVFFAFGPSTAGTIYAFGYTLLTGVLLNFV 433

Query: 502 TAISIVRAMMIFIIRYKKMKSID-INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
             +   R M+      K +++      +     + +   I F+  R   + IS       
Sbjct: 434 FGVFATRVMIRGAASIKALRNPWLYGAVKPGKEVKEKKPIDFVGLRKRFLTISTCLMAAI 493

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFL 618
           I      G+    +F GG  + +     +  S V+    +    +               
Sbjct: 494 ILCAAVFGVRLDTEFTGGAMITLSYQGEISTSEVQKTASTALENNGLTLQTGENVATGEQ 553

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPL--STIQNTEIVGPKISRELIRKGIVGVIIS 676
                 PG+    T  +E +   + E  P       +   V   +  + ++K +V V+ S
Sbjct: 554 TLKISMPGNETVTTDQVENLLTSLNEQYPDNAFAQLSLSNVSAAMGTKFLQKSLVAVVFS 613

Query: 677 AIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + +L+YI  RFK        L A+  L+ D+    G F L     +   +AA+LT++GY
Sbjct: 614 LLLILLYIGFRFKKIGGLTGGLMAVLALLNDLMVVFGTFVLLRTPLDGNFIAAMLTILGY 673

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---- 788
           S+ND VVVYDR+R+N  L      F +L++ S+N++  R++ T++   +++  M V    
Sbjct: 674 SINDTVVVYDRIRENRALMGKKTPFEELVNHSVNQSARRTIITTVTTVMALGVMCVVSKL 733

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +G   I +FA P+  G++    +S+ ++    +   D ++K A
Sbjct: 734 YGLDSIFTFAFPLMMGMLSGVYTSLCVSTSAWVLWNDRKSKKA 776


>gi|218461454|ref|ZP_03501545.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           etli Kim 5]
          Length = 440

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 226/440 (51%), Positives = 315/440 (71%), Gaps = 4/440 (0%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MRN+PWLV  YS+I  IGLLIALPN LPQS+L R P+ +P  ++SLGLDLRGGSHLVLEV
Sbjct: 1   MRNSPWLVFTYSVIIVIGLLIALPNALPQSVLQRIPAWLPHEQVSLGLDLRGGSHLVLEV 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           DE D     LQ    + R  L+++GI   ++ + QN+I ++ AD+   +    ++     
Sbjct: 61  DEADLTKERLQSLLQDARRVLREKGIQPKAVVRSQNQIVVTLADAAQSDAAVTELKTLAN 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +++ L+   + +L VT     I++  S   I   + +A++QS+E+IRQR+DQ+G+SE T
Sbjct: 121 PISTGLSAG-QADLDVTANGATITVGFSPAGISANVDNAVQQSLEVIRQRVDQVGVSEPT 179

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQR+G++R+L+QLPG QDP+RLRQLLG+TAKMSFH + PNN       GV  ++D +G  
Sbjct: 180 IQRIGANRVLVQLPGAQDPTRLRQLLGSTAKMSFHMLSPNNQPGP---GVTMMQDDEGRT 236

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           + V D+VEISG  L+ A  +FDP T +P+V   FD  G+ RF E+TR N+G P A+VLD 
Sbjct: 237 HAVLDRVEISGDRLSDARVSFDPNTREPIVSFRFDSAGSTRFAEITRQNVGNPFAIVLDN 296

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VL+APVI + I  G  QISGNF+ ++A  LAAMLRAG+LP KL ++EER VGADLG+D+
Sbjct: 297 KVLSAPVIREPITGGSGQISGNFSADSATTLAAMLRAGALPAKLTVIEERTVGADLGADA 356

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  + +AG VL+ +F+ VLYG WG++A+ ++ ++ ILTL+ L+L+GATLTLP IAG+
Sbjct: 357 IKMGLYSGIAGFVLVAVFIFVLYGTWGILANVALLIHTILTLSALTLVGATLTLPGIAGV 416

Query: 421 VLGIGLAVDSNILVNERIRE 440
           VLGIGLAVD+N+L+NERIRE
Sbjct: 417 VLGIGLAVDANVLINERIRE 436



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  +  + I+ G+   I   + + ++I++ +   + + A   L++    TL    L G  
Sbjct: 349 GADLGADAIKMGLYSGIAGFVLVAVFIFVLYG-TWGILANVALLIHTILTLSALTLVGAT 407

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             L  +A V+  IG +V+  V++ +R+R+  + 
Sbjct: 408 LTLPGIAGVVLGIGLAVDANVLINERIREETRK 440


>gi|117619109|ref|YP_856273.1| protein-export membrane protein SecD [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560516|gb|ABK37464.1| protein-export membrane protein SecD [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 617

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 171/530 (32%), Positives = 286/530 (53%), Gaps = 35/530 (6%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N  P +    +  A+  N + LGLDLRGG H ++EVD  + +    +    + RS
Sbjct: 99  FITALNLAPSTP--AWLEAIGANPLKLGLDLRGGVHFLMEVDMAEALTKQQEQMVQDFRS 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+ + I    +R+  +++ + F D   +      +           N D          
Sbjct: 157 ELRTQKIRYSGVRRAGDQVQVLFRDEADQAKAISHLRRQ--------NPDLTFTTEQKGD 208

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           E  +   LS+  I +V  +A+EQ++ IIR R++++G++E  +Q+ G+ RI+++LPG QD 
Sbjct: 209 EFVLLAGLSEAKIKEVKKYALEQNITIIRNRVNELGVAEPLVQQQGAERIVVELPGIQDT 268

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHL 254
           +R +++LG TA + FH V      +    G          D +G   +++ ++ ++G H+
Sbjct: 269 ARAKEILGATATLEFHMVDETADIQAAADGRVPPSSKVYNDRNGRPVVLQKRIILTGDHI 328

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV------- 307
            GA + FD  + +P V+I  D  G  +    T+DN+GK +A V                 
Sbjct: 329 VGAQSGFDEYS-RPQVNIKLDGQGGNKMANFTKDNVGKGMATVFIEYKPVGQPGPDGKRK 387

Query: 308 -----------INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                        Q+    + +I+G      A  LA +LRAG+L   + IVEER +G  L
Sbjct: 388 FRKQEEVINVATIQSRLGSQFRITGIDNANEAHNLALLLRAGALIAPIQIVEERTIGPSL 447

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415
           G  +I  G  AI   +++IVLFM + Y  +G VA+ ++ +N++L + ++S++  AT+TLP
Sbjct: 448 GQQNIDSGMEAIGWAMLVIVLFMGIYYRAFGWVANIALTMNLVLIVGIMSMIPGATMTLP 507

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVD+N+L+ ERIREE R  + V  ++ +GF RA+STI DSN+T+LI  V
Sbjct: 508 GIAGIVLTLGMAVDANVLIYERIREEIRNGRGVQQAIHLGFDRAFSTIADSNVTSLITCV 567

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +LF  G GA++GFA+T+G+ +  SMFTAI++ RA++      +++  + I
Sbjct: 568 ILFGIGTGAIKGFALTLGIGLSASMFTAITVSRAIINLAWGGRRLDKLPI 617



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 86/205 (41%), Gaps = 6/205 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A       +  +   ++    I     +GP + ++ I  G+  +  + + +++++ I 
Sbjct: 414 DNANEAHNLALLLRAGALIAPIQIVEERTIGPSLGQQNIDSGMEAIGWAMLVIVLFMGIY 473

Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           ++  F   A   L +++   +G  ++  G    L  +A ++  +G +V+  V++Y+R+R+
Sbjct: 474 YR-AFGWVANIALTMNLVLIVGIMSMIPGATMTLPGIAGIVLTLGMAVDANVLIYERIRE 532

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++        +  I    +        +++ + I+ + +   G   I  FA+ +  G+ 
Sbjct: 533 EIR---NGRGVQQAIHLGFDRAFSTIADSNVTSLITCVILFGIGTGAIKGFALTLGIGLS 589

Query: 807 VAASSSIFIAAPILLF-IYDWRAKN 830
            +  ++I ++  I+       R   
Sbjct: 590 ASMFTAITVSRAIINLAWGGRRLDK 614



 Score = 40.8 bits (93), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  IG L A PN   +    +  SA     + L              D
Sbjct: 4   RYPLWKYLMVVVVIAIGFLYAAPNLYGEDPALQI-SASRGAEVKL--------------D 48

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             D V   L      ++    + G            I + F ++  +    D V   L
Sbjct: 49  TLDLVKETLDAAQIPVKHAAFEHGF-----------ILVRFKNTEEQLKARDIVANKL 95


>gi|322437194|ref|YP_004219406.1| protein-export membrane protein SecF [Acidobacterium sp. MP5ACTX9]
 gi|321164921|gb|ADW70626.1| protein-export membrane protein SecF [Acidobacterium sp. MP5ACTX9]
          Length = 320

 Score =  231 bits (588), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 160/309 (51%), Gaps = 9/309 (2%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPVD 590
             +     + ++  +++ +  S++FS+  +  L        G+DFKGG Q+    +   +
Sbjct: 1   MELFRQPNVDWLGKKWYFLAFSLVFSVAGVFSLLFWHHLPLGVDFKGGTQVVTRFDSTPN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDG-----EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              VR+ ++   I D   Q   G         ++ L           +    V+  +   
Sbjct: 61  EDHVRAAMDKAGIHDARIQRISGAANEVSNQVVIALPESTATDSNHDQGRSAVENALKAN 120

Query: 646 --VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                  +   +IVGP   ++L ++ +   I S I ML+Y+W RF+  + + A+  +  D
Sbjct: 121 YSDSGFQVLQVDIVGPTAGKQLQKQAVYATIYSLIGMLVYLWFRFELIYGVAAVVAVFHD 180

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T+G F+L   E  LT +AA+LTLIGYS+ND VVV+DR+R+N+ L +      D++++
Sbjct: 181 TLITVGAFSLTNQEITLTVIAAILTLIGYSMNDTVVVFDRIRENLAL-SRREPLADVVNR 239

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           SIN+TL R+V +S   F++VL + ++GG V+  F+  +  GI++   SSI +AAP+L+  
Sbjct: 240 SINQTLSRTVLSSGLTFLTVLSIYLFGGEVLHGFSFALVVGILIGTYSSIAVAAPMLVAW 299

Query: 824 YDWRAKNAR 832
            DWRAK  +
Sbjct: 300 QDWRAKQGK 308


>gi|222832549|gb|EEE71026.1| predicted protein [Populus trichocarpa]
          Length = 1100

 Score =  231 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 160/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS +    ++  L T GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIRKDIPFMKYALVLNAISFITFALAVFFLLTRGLHLSVEFTGGTVMEVAYTQTAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ VR  +  L   D++ QNF   ++ ++RL  Q   S AQ    E V   + +     T
Sbjct: 61  IAKVRDTVSKLGYSDVTVQNFGTSRDVMIRLPVQKDVSSAQQS--EQVLTALKKEDAEVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL+  G++ +    + ++IY+ +RF+W F + A+   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGDELMHNGLMALGFVVLGIVIYLAMRFEWKFGVAAVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +A VL ++GYSVN+ VV++DR+R+  + +   +S  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LSTTEVIDHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +    VL M  +GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|319789794|ref|YP_004151427.1| protein-export membrane protein SecF [Thermovibrio ammonificans
           HB-1]
 gi|317114296|gb|ADU96786.1| protein-export membrane protein SecF [Thermovibrio ammonificans
           HB-1]
          Length = 294

 Score =  231 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 101/297 (34%), Positives = 159/297 (53%), Gaps = 4/297 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICL-LFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 F+  R+W    S+   + +     F  G  +GIDF GG+ + V    P   +  
Sbjct: 1   MERKFDFIGKRYWAYLFSLTLILGTWLYGAFIKGPKFGIDFTGGVLVLVKVEEPGITTGK 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              +    +  ++ QN  GE  F+++       +     +   +K+         TI   
Sbjct: 61  IREIFKGSVEGVTVQNVQGENEFMIKAPATGDTNKTVETIRRKLKEHFKS---GVTILKV 117

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E++GP + +EL  KGI+ +I + I +LIY+  RF++ FA+GA+  LI D   T G F   
Sbjct: 118 EMIGPTVGKELREKGIMAIIYALIGILIYVAWRFEFIFAVGAVLALIHDALATTGVFMAV 177

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G EF+L  +AA+LT+IGYS+ND +VVYDR+R+NMK+Y  S  F ++++ SIN+TL R++ 
Sbjct: 178 GREFSLPVIAALLTVIGYSINDTIVVYDRIRENMKVYLRSKPFEEIVNDSINQTLSRTII 237

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           TS+     VL + ++GG VI  FA  +  GI V   SSIFIA+ I++  Y +  K  
Sbjct: 238 TSLTTLFVVLCLYLFGGGVINDFAFVLLVGITVGTYSSIFIASAIVVDWYKYMKKVK 294


>gi|119384157|ref|YP_915213.1| preprotein translocase subunit SecD [Paracoccus denitrificans
           PD1222]
 gi|119373924|gb|ABL69517.1| protein-export membrane protein SecD [Paracoccus denitrificans
           PD1222]
          Length = 554

 Score =  231 bits (587), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 191/550 (34%), Positives = 302/550 (54%), Gaps = 32/550 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQ-----------------------SMLDRFPSAMP 40
             W  +L   +  +GLL A PN                           +    +P+ +P
Sbjct: 5   PFWKRLLILGLVALGLLYATPNLFYTKVEQHNDAITAAERNGFETPEEAAARAGWPNWLP 64

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL---KKEGIGVFSMRQIQNK 97
              ++LGLDLRGG+HL+ EV   D     +     ELR  L   ++    V  ++  + +
Sbjct: 65  SGLVNLGLDLRGGAHLLGEVHVQDVYKARMDSLWPELRDALVAQREVVGAVRRVQAPEGQ 124

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           + +   +        +        V + L    + +L ++ +   +++ LS         
Sbjct: 125 LAVEIGNPEQMAKAVEIARGLATPV-ASLTGAGQSDLAISASGNRLNVQLSDAEKAATDD 183

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
             ++QS+EIIR+RID++G  E TI R G  RILIQ+PG      L++L+GTTAK++F+ V
Sbjct: 184 RTVQQSLEIIRRRIDEVGTREPTIMRQGKDRILIQVPGIGSAEELKELIGTTAKLTFNPV 243

Query: 218 LPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           +   +      G         D  G  Y++E+   ++G  L  A  +FD     P VD  
Sbjct: 244 VSRIADANARPGPGNVLLPSMDEPGVYYVIEESPVVTGEDLTDARPSFDQNG-APAVDFR 302

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
           F   GA+RF   T  NIG+P A+VLD +V++APVI QAI +G  QISG   ++ +  LA 
Sbjct: 303 FGPSGAKRFGAYTSSNIGQPFAIVLDNQVISAPVIRQAITTGSGQISGAMNVDESTRLAV 362

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
           +LRAG+LP ++  +EER +G +LG DSI  G  + +   V +V +M+  YG +G+ A  +
Sbjct: 363 LLRAGALPAEMTFLEERTIGPELGQDSIDAGRLSSIIATVAVVAYMVASYGLFGVFASIA 422

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           + +NVIL L+++S++GATLTLP IAGIVL +G AVD+N+++ ERIREE R  + +  ++D
Sbjct: 423 VIVNVILILSVMSMMGATLTLPGIAGIVLTVGTAVDANVIIYERIREELRAGKRIVKAID 482

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            GF  A S I D+N+T+ IA  V+FF G G V+GFA+T+ + ++ S+FTAI + R M++F
Sbjct: 483 DGFGEAMSAIIDANVTSFIAAAVMFFLGSGPVKGFAVTLTIGLVTSVFTAIYLTRLMIVF 542

Query: 514 IIRYKKMKSI 523
            + ++K K +
Sbjct: 543 WLEWRKPKEL 552



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 91/203 (44%), Gaps = 4/203 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                     V  +   +    T      +GP++ ++ I  G +  II+ +A++ Y+   
Sbjct: 352 MNVDESTRLAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRLSSIIATVAVVAYMVAS 411

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +   F + A   +I+++   L   ++ G    L  +A ++  +G +V+  V++Y+R+R+ 
Sbjct: 412 YGL-FGVFASIAVIVNVILILSVMSMMGATLTLPGIAGIVLTVGTAVDANVIIYERIREE 470

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++           ID    E +   +  ++ +FI+   M   G   +  FA+ +  G+V 
Sbjct: 471 LRAGKR---IVKAIDDGFGEAMSAIIDANVTSFIAAAVMFFLGSGPVKGFAVTLTIGLVT 527

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  ++I++   +++F  +WR   
Sbjct: 528 SVFTAIYLTRLMIVFWLEWRKPK 550


>gi|163731951|ref|ZP_02139398.1| protein-export membrane protein SecF [Roseobacter litoralis Och
           149]
 gi|161395405|gb|EDQ19727.1| protein-export membrane protein SecF [Roseobacter litoralis Och
           149]
          Length = 326

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 174/307 (56%), Gaps = 9/307 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+       F +     +GIS +  + +       GLNYGIDF+GG  +   + +P
Sbjct: 1   MRLRLVKQNTNFDFFKRWKLWLGISGVMMVVAFASFMLQGLNYGIDFRGGTTIRTESTQP 60

Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD+ V R  L SL++GD         Q    +   ++R++ Q G    + +++  +   +
Sbjct: 61  VDIGVYREALASLELGDISITEVFDPQFEADQNVAMIRIEAQEGGEAVEGQLISDIGAAL 120

Query: 643 TEIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               P       + E VGPK+S ELI+  ++ V+++  A+LIYIW+RF+W FA GA+  L
Sbjct: 121 QAADPGLKLPFASVESVGPKVSGELIQTAVIAVVLAIGAVLIYIWLRFEWQFAAGAVLAL 180

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           + D+  T+G F+   I F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y       ++
Sbjct: 181 VHDVILTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKR-PLNEV 239

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ SINETL R+  TS+   ++++ + V GG VI  F   M +G++V   SSIF+A+  L
Sbjct: 240 LNISINETLSRTFMTSVTTLLALIALFVLGGDVIRGFVFAMIWGVIVGTYSSIFVASAAL 299

Query: 821 LFIYDWR 827
           L++   R
Sbjct: 300 LYLGVKR 306


>gi|218667144|ref|YP_002426459.1| protein-export membrane protein SecF [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218519357|gb|ACK79943.1| protein-export membrane protein SecF [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 337

 Score =  230 bits (586), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 172/305 (56%), Gaps = 1/305 (0%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L      + FM  R+  +G+S L  I S+ +    GLNY IDF GG  + +
Sbjct: 15  SFISEVAMELFKVRTHVDFMSRRWIFLGVSALLIIASVAVFLVRGLNYSIDFTGGTLVEL 74

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             ++  DL  VR  L      D   Q F G+++ L+RL+  PG+S A    +  V +K  
Sbjct: 75  AFSKTPDLGAVRGTLTQAGFHDAVVQTFGGDRDLLIRLRTVPGESSAVGNTILQVFRKDQ 134

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
              P   ++ TE VGP++ +EL  KGI+ +II  + +LIY+  RF+W FA+G +  ++ D
Sbjct: 135 VEYPDVQLRRTEYVGPEVGKELRNKGIMALIIVTLGILIYVGFRFEWRFAVGGVLAMLHD 194

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               +GFFA+   EF+LT +AA+L ++GYS+ND VVV+DRMR++++   +      + + 
Sbjct: 195 PILVVGFFAISHEEFSLTVIAALLVIMGYSLNDTVVVFDRMREDLRASRSG-DVAQIFNV 253

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +INETL R+V TS   F+  L + ++GG VI  FA  +  G+VV   SSIF+A+PI L++
Sbjct: 254 AINETLSRTVITSFITFMVALSLFLFGGPVIHGFATALVIGVVVGTYSSIFVASPIALWL 313

Query: 824 YDWRA 828
              R 
Sbjct: 314 GLKRE 318


>gi|294101594|ref|YP_003553452.1| protein-export membrane protein SecF [Aminobacterium colombiense
           DSM 12261]
 gi|293616574|gb|ADE56728.1| protein-export membrane protein SecF [Aminobacterium colombiense
           DSM 12261]
          Length = 292

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 94/300 (31%), Positives = 158/300 (52%), Gaps = 8/300 (2%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +     + +FM+ R   + +S+   + S+ LLFT GLN GIDF GG  + V     V + 
Sbjct: 1   MFRRDFSFKFMKHRRQAILLSLGLIVVSLVLLFTKGLNLGIDFTGGNLIQVEFASQVPVG 60

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            VR  L  +       Q +      +                 + V + + +  P   + 
Sbjct: 61  DVRDVLAEIGQKQAVIQGYSDNGVIIRVNV-------DTEESRKEVIQTLKDKYPGMEVL 113

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E VGP +  +L R+  + V ++ + +L YI +RFK+ FA+ ++  L+ D   TLG F+
Sbjct: 114 RFEKVGPVVGEKLRREAFLAVSLALLGILAYITVRFKFRFAVVSVIALMHDTIITLGIFS 173

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G E +L  +AA+LT++GYS+ND +VV+DR+R+N   Y       +++D SIN+TL R+
Sbjct: 174 LLGREISLPFIAAILTIVGYSLNDTIVVFDRVRENW-KYLRQEGLLEVLDMSINQTLSRT 232

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + TS+  F  VL + +WGG+VI +F+  +  GI+V   SS+ IA+ +L   Y    ++ +
Sbjct: 233 INTSLTTFFPVLALFIWGGAVIANFSFALLLGILVGTYSSVCIASSLLAEWYLRYPESKK 292


>gi|300022795|ref|YP_003755406.1| protein-export membrane protein SecF [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299524616|gb|ADJ23085.1| protein-export membrane protein SecF [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 324

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 116/304 (38%), Positives = 175/304 (57%), Gaps = 5/304 (1%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           I     F   P  + + FM+ +   + +SI+  + SI L+   GLNYG+DFKGG  + + 
Sbjct: 6   IPVFKGFDFFPHDLNLPFMKVKGPALVLSIIAMVVSIGLIGIKGLNYGVDFKGGSLIELK 65

Query: 585 ANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 D+S +R  L S+ +G +  Q F    + LVRL+ QPG    Q      +KK + 
Sbjct: 66  TKSGNADISALREKLNSIGVGSVQIQEFGSPDDVLVRLEEQPGGEAEQQA---ALKKVVD 122

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   +  E+VGP +S EL     + V    +A++ Y+W RF+W FALGA+  L  D
Sbjct: 123 ATSETYVERRVEVVGPAVSSELRMTSFIAVAAGILAIVAYVWFRFEWQFALGAVLALSHD 182

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T+G FALF  EF+L+ VAA+LT++GYSVND VVV DR+R+N++ +   +    L++ 
Sbjct: 183 VIVTVGIFALFQFEFDLSTVAALLTILGYSVNDTVVVSDRIRENLRKF-KKMELNQLLNL 241

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           SINETL R++ T M A   ++ + V+GG VI +F + M  G+V+   SSIFIAAP+L ++
Sbjct: 242 SINETLSRTILTGMTALAVLISLYVFGGEVIRNFNLAMLLGVVIGTYSSIFIAAPLLGYL 301

Query: 824 YDWR 827
              R
Sbjct: 302 GVKR 305


>gi|83954202|ref|ZP_00962922.1| protein-export membrane protein SecD [Sulfitobacter sp. NAS-14.1]
 gi|83841239|gb|EAP80409.1| protein-export membrane protein SecD [Sulfitobacter sp. NAS-14.1]
          Length = 549

 Score =  230 bits (586), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 199/544 (36%), Positives = 300/544 (55%), Gaps = 29/544 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43
           W  +L  + C  GL +ALPN                         ++    +P  MP+  
Sbjct: 7   WKRVLIILTCAAGLWLALPNAFYGPVEQHNDAVKAISVAGSTPELEAQKALWPEWMPERL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA 103
           ++LGLDLRGG+HL+ EV+ +D     ++    E+R  L+     V  +   + ++ +   
Sbjct: 67  VNLGLDLRGGAHLLAEVNVEDVYANRMEAAWPEVRDALRSI-TPVRRVDAPKGELRVRIN 125

Query: 104 DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
           D+       +      + V S L    + +++V      I+I L+           ++QS
Sbjct: 126 DASVMAQALEATRALARPVQS-LTGTGQNDIVVNGANDIITITLTDAEKQATDERTMQQS 184

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV----LP 219
           +EIIR+RID++G  E TIQR GS RILIQ+PG    + L+ ++GTTA+++F+ V      
Sbjct: 185 LEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSAAELKAIIGTTAQLTFNPVVNRGAN 244

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
            N+  G    +    ++ G  Y++E    ++G  L  A  +FD    +P V   FD  GA
Sbjct: 245 ENAAPGLGNSLLPDAEAPGVFYIIETAPVVTGEQLVDAQPSFDQNG-RPAVSFRFDTTGA 303

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
           R+F   T +NIG P A+VLD  V++AP I  AIP G   I+GNFT+E +  LA +LRAG+
Sbjct: 304 RKFGTYTAENIGAPFAIVLDDEVISAPTIQSAIPGGSGIITGNFTVEESTNLAVLLRAGA 363

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           LP  L  VEER +G +LG DSI  G  A       ++ FM   YG +GL A+ ++ +NV 
Sbjct: 364 LPAGLTFVEERTIGPELGQDSIDAGKIATSVAFGAVLFFMWASYGLFGLFANIALIINVG 423

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           +   LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++ +G+ RA
Sbjct: 424 MIFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKTAKGPARAISLGYERA 483

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            S I D+NIT  I   +LF  G G VRGFA+T+GL I+ S+FTA  + R +++F    ++
Sbjct: 484 LSAILDANITTFIIATILFVLGSGPVRGFAVTLGLGIVTSVFTAYFVTRLIVVFWFERRR 543

Query: 520 MKSI 523
            K+I
Sbjct: 544 PKTI 547



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +   ++  A+L ++W  +   F L A   LI+++    G  +L G
Sbjct: 375 TIGPELGQDSIDAGKIATSVAFGAVLFFMWASYGL-FGLFANIALIINVGMIFGLLSLIG 433

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K   T+      I       L   +  
Sbjct: 434 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---TAKGPARAISLGYERALSAILDA 490

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI    + V G   +  FA+ +  GIV +  ++ F+   I++F ++ R   
Sbjct: 491 NITTFIIATILFVLGSGPVRGFAVTLGLGIVTSVFTAYFVTRLIVVFWFERRRPK 545


>gi|83943028|ref|ZP_00955488.1| protein-export membrane protein SecD [Sulfitobacter sp. EE-36]
 gi|83846036|gb|EAP83913.1| protein-export membrane protein SecD [Sulfitobacter sp. EE-36]
          Length = 549

 Score =  230 bits (586), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 198/544 (36%), Positives = 299/544 (54%), Gaps = 29/544 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43
           W  +L  + C  GL +ALPN                         +     +P  MP+  
Sbjct: 7   WKRVLIILTCAAGLWLALPNAFYGPVEQHNDAVKAISVAGATPELEEQKALWPEWMPERL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA 103
           ++LGLDLRGG+HL+ EV+ +D     ++    E+R  L+     V  +   + ++ +   
Sbjct: 67  VNLGLDLRGGAHLLAEVNVEDVYANRMEAAWPEVRDALRSI-TPVRRVDAPKGELRVRIN 125

Query: 104 DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
           D+       +      + V S L    + +++V      I+I L+           ++QS
Sbjct: 126 DASVMAQALEATRALARPVQS-LTGTGQNDIVVNGANDIITITLTDAEKQATDERTMQQS 184

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV----LP 219
           +EIIR+RID++G  E TIQR G+ RILIQ+PG    + L+ ++GTTA+++F+ V      
Sbjct: 185 LEIIRRRIDEVGTREPTIQRQGADRILIQVPGIGSAAELKAIIGTTAQLTFNPVVNRGAN 244

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
            N+  G    +    ++ G  Y++E    ++G  L  A  +FD    +P V   FD  GA
Sbjct: 245 ENAAPGLGNSLLPDAEAPGVFYIIETAPVVTGEQLVDAQPSFDQNG-RPAVSFRFDTTGA 303

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
           R+F   T +NIG P A+VLD  V++AP I  AIP G   I+GNFT+E +  LA +LRAG+
Sbjct: 304 RKFGTYTAENIGAPFAIVLDDEVISAPTIQSAIPGGSGIITGNFTVEESTNLAVLLRAGA 363

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           LP  L  VEER +G +LG DSI  G  A       ++ FM   YG +GL A+ ++ +NV 
Sbjct: 364 LPAGLTFVEERTIGPELGQDSIDAGKIATSVAFGAVLFFMWASYGLFGLFANIALIINVG 423

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           +   LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++ +G+ RA
Sbjct: 424 MIFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREELKTAKGPARAISLGYERA 483

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            S I D+NIT  I   +LF  G G VRGFA+T+GL I+ S+FTA  + R +++F    ++
Sbjct: 484 LSAILDANITTFIIATILFVLGSGPVRGFAVTLGLGIVTSVFTAYFVTRLIVVFWFERRR 543

Query: 520 MKSI 523
            K+I
Sbjct: 544 PKTI 547



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +   ++  A+L ++W  +   F L A   LI+++    G  +L G
Sbjct: 375 TIGPELGQDSIDAGKIATSVAFGAVLFFMWASYGL-FGLFANIALIINVGMIFGLLSLIG 433

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K   T+      I       L   +  
Sbjct: 434 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELK---TAKGPARAISLGYERALSAILDA 490

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI    + V G   +  FA+ +  GIV +  ++ F+   I++F ++ R   
Sbjct: 491 NITTFIIATILFVLGSGPVRGFAVTLGLGIVTSVFTAYFVTRLIVVFWFERRRPK 545


>gi|110679781|ref|YP_682788.1| preprotein translocase subunit SecF [Roseobacter denitrificans OCh
           114]
 gi|109455897|gb|ABG32102.1| protein-export membrane protein SecF [Roseobacter denitrificans OCh
           114]
          Length = 326

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 174/307 (56%), Gaps = 9/307 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+       F +     +GIS L  + +       GLNYGIDF+GG  +   + +P
Sbjct: 1   MRLRLVKQNTNFDFFKRWKLWLGISGLMMVVAFVSFLLQGLNYGIDFRGGTTIRTESTQP 60

Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD+ V R  L +L++GD         Q    +   ++R++ Q G    + +++  +   +
Sbjct: 61  VDIGVYREALAALELGDISITEVFDPQFEADQNVAMIRIEAQEGGEAVEGQLISDIGAAL 120

Query: 643 TEIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               P       + E VGPK+S ELI+  ++ V+++  A+LIYIW+RF+W FA GA+  L
Sbjct: 121 QAADPGLKLPFASVESVGPKVSGELIQTAVIAVVLAIGAVLIYIWLRFEWQFAAGAVLAL 180

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           + D+  T+G F+   I F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y       ++
Sbjct: 181 VHDVILTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKR-PLNEV 239

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ SINETL R+  TS+   ++++ + V GG VI  F   M +G++V   SSIF+A+  L
Sbjct: 240 LNISINETLSRTFMTSVTTLLALIALFVLGGDVIRGFVFAMIWGVIVGTYSSIFVASAAL 299

Query: 821 LFIYDWR 827
           L++   R
Sbjct: 300 LYLGVKR 306


>gi|254474864|ref|ZP_05088250.1| protein-export membrane protein SecF [Ruegeria sp. R11]
 gi|214029107|gb|EEB69942.1| protein-export membrane protein SecF [Ruegeria sp. R11]
          Length = 322

 Score =  230 bits (585), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 175/305 (57%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  LIP+  +  F +     +GIS +  I         GLNYGIDF+GG  +   +   
Sbjct: 1   MRLKLIPESTSFDFFKRWKLWLGISAVMIIVGFASFALQGLNYGIDFRGGTTIRTESTTA 60

Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +D+   R  L+ L++GD            + +   +VR+Q Q          +E + + +
Sbjct: 61  IDVGAYRDALQPLELGDVSISEVFDPTFEEDQHVAMVRIQAQDDGEAISGEQIEEINRAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             + P     + E VGPK+S EL++  ++ V ++  A+LIYIW+RF+W FALGA+  L+ 
Sbjct: 121 DTVAPGIKFVSVESVGPKVSGELVQTAVIAVALAIGAVLIYIWLRFEWQFALGAVAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I+F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y       ++++
Sbjct: 181 DVVLTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKK-PLAEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINETL R++ TS+   ++++ + V GG VI  F   M +G+++   SSIF+A+ ILL+
Sbjct: 240 ISINETLSRTMMTSVTTLLALVSLYVLGGDVIRGFVFAMIWGVIIGTYSSIFVASTILLW 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|226329110|ref|ZP_03804628.1| hypothetical protein PROPEN_03013 [Proteus penneri ATCC 35198]
 gi|225202296|gb|EEG84650.1| hypothetical protein PROPEN_03013 [Proteus penneri ATCC 35198]
          Length = 354

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 96/320 (30%), Positives = 172/320 (53%), Gaps = 2/320 (0%)

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
            ++  +      + +     +   L      I FMR       ISIL  I SI ++   G
Sbjct: 1   MVVNALRNCLFKEHVVAQDYTVEQLNHGRKVIDFMRWDNVAFSISILLLIASIAIISMKG 60

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            N+G+DF GG  + +  ++P DL  +R +L++    D   QNF   ++ +VR+    G  
Sbjct: 61  FNWGLDFTGGTVIEINLSQPADLDKMRDSLDTAGFKDPLLQNFGSSRDIMVRMPPVEG-Q 119

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             Q    +++     E+   + ++  E VGP +  EL + G + ++ + I +LIY+  RF
Sbjct: 120 AGQELGKKVIDVINAEVDNDAVVKRIEFVGPSVGSELAQTGAMALLSALICILIYVGFRF 179

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +W  ALGA+  L  D+  TLG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N 
Sbjct: 180 EWRLALGAVIALAHDVVITLGVLSLFHIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENF 239

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +       + ++++ S+ +TL R++ TS    + VL + ++GGS++  F++ M  G+ + 
Sbjct: 240 RKIRRGTPY-EIMNVSLTQTLSRTIMTSATTLLVVLMLYIFGGSMLQGFSLVMLIGVSIG 298

Query: 809 ASSSIFIAAPILLFIYDWRA 828
             SSI++A+ + L +   R 
Sbjct: 299 TISSIYVASALALKMGMKRE 318


>gi|239818077|ref|YP_002946987.1| preprotein translocase subunit SecD [Variovorax paradoxus S110]
 gi|239804654|gb|ACS21721.1| protein-export membrane protein SecD [Variovorax paradoxus S110]
          Length = 627

 Score =  230 bits (585), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 158/512 (30%), Positives = 274/512 (53%), Gaps = 21/512 (4%)

Query: 24  PNFLPQSMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF 80
           P  +  +++ R P+ +       + LGLDLRGG   +L+VD    ++   + ++ +LR+ 
Sbjct: 103 PYVVALNLVSRSPAWLTALHAFPMYLGLDLRGGVDFLLQVDMKGAIDKKAESFASDLRTT 162

Query: 81  LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
            + +GI   S+ +    I +SF D+   E     +    Q        D         + 
Sbjct: 163 FRDKGIRGTSVNRNGQAIEVSFRDAAALEAAKRLIQDQFQ--------DLATTDSQDGSN 214

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
             +   +      ++   A++Q++  +  RI+++G++E  IQ+ G  RI++QLPG QD +
Sbjct: 215 WRLVATIKPEAARRLQDAALKQNITTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTA 274

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------DGNQYLVEDKVEISGIH 253
           + + +LG TA +    V  +   +        +          +G   +V+ +V ++G +
Sbjct: 275 KAKDILGRTATLEMRLVDESAEGRAAELSGGPVPFGSEKFLERNGRPVIVKKQVLVTGEN 334

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQ 310
           L  A   FD ++++P VD++ D  G R   +V+R+N  K +A+++  +    +       
Sbjct: 335 LTDAQPGFDQQSNQPKVDLTMDAKGGRIMRDVSRENYKKRMAMLIFEKGKGEVLTAPSIN 394

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                + QISG+ T+  A  LA +LRAGSL   + I++ER +G  LG+D+I KG  +++ 
Sbjct: 395 GELGNRFQISGSMTVAEAADLALLLRAGSLAAPMEIIQERTIGPSLGADNIEKGFKSVMY 454

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
           G + I++FM   Y  +GL +  ++ +N++L +A+LS+L ATLTLP IA + L IG+A+DS
Sbjct: 455 GFLAIMVFMCAYYALFGLFSSIALAVNLMLLVAILSMLQATLTLPGIAAMALAIGVAIDS 514

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
           N+L+NER+REE R   S   ++  G+ RA+ TI DSN+T LIA + L  FG G VRGFA+
Sbjct: 515 NVLINERVREELRNGASPQAAIHAGYDRAWGTILDSNVTTLIAGIALLAFGSGPVRGFAV 574

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              + I+ SMF+A+   R ++ F    KK   
Sbjct: 575 VHCIGIVTSMFSAVFFSRGLVNFWYGQKKKLK 606



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 89/219 (40%), Gaps = 4/219 (1%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              L       G           +  +   +     I     +GP +  + I KG   V+
Sbjct: 394 NGELGNRFQISGSMTVAEAADLALLLRAGSLAAPMEIIQERTIGPSLGADNIEKGFKSVM 453

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              +A+++++   +   F L +   L +++   +   ++      L  +AA+   IG ++
Sbjct: 454 YGFLAIMVFMCAYYAL-FGLFSSIALAVNLMLLVAILSMLQATLTLPGIAAMALAIGVAI 512

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++ +R+R+ ++      S +  I    +   G  + +++   I+ + +  +G   +
Sbjct: 513 DSNVLINERVREELR---NGASPQAAIHAGYDRAWGTILDSNVTTLIAGIALLAFGSGPV 569

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FA+    GIV +  S++F +  ++ F Y  + K   +
Sbjct: 570 RGFAVVHCIGIVTSMFSAVFFSRGLVNFWYGQKKKLKTV 608



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 40/137 (29%), Gaps = 25/137 (18%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  ++  +GL+ +LPNF  ++   +  +A                     V 
Sbjct: 3   RYPVWKYAIIVIVLLVGLIYSLPNFFGEAPAVQVSAAKS------------------TVK 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D      ++         LK  G+    +      +   FA    +    D +   L  
Sbjct: 45  VDAATQSRVEEA-------LKAAGLAPDLLTLEGGSLRARFATPDEQLKARDTLQRTLVP 97

Query: 122 VNSKLNVDPKKNLLVTT 138
             +        NL+  +
Sbjct: 98  DPADPPYVVALNLVSRS 114


>gi|254490638|ref|ZP_05103823.1| protein-export membrane protein SecD [Methylophaga thiooxidans
           DMS010]
 gi|224464094|gb|EEF80358.1| protein-export membrane protein SecD [Methylophaga thiooxydans
           DMS010]
          Length = 574

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 176/523 (33%), Positives = 291/523 (55%), Gaps = 35/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       ++LGLDLRGG H ++EVD +  V   L  Y+ ++R  L+ E I
Sbjct: 60  NLAPNTPEWLSSLGAEPMNLGLDLRGGVHFLMEVDMNAAVKQALDGYASDIRLTLRDEKI 119

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               ++    ++ + F  +  ++N    ++  +  +   +                +S+ 
Sbjct: 120 RYKQIKIDDQEVLVLFRSAADRDNAETLISREMDALQVAVEEGKADP--------TLSLK 171

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L++  + +  + A++Q++  +R RI+++G++E T+Q+ GS+RI++QLPG QD ++ +++L
Sbjct: 172 LTEVTLRETKTLALQQNITTLRNRINELGVAEPTVQQQGSNRIVVQLPGVQDTAQAKKIL 231

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V   +  +  + G            DG  YL+  +V ++G H+  A +  
Sbjct: 232 GATATLEFRLVDFEHDVQDALNGRVPANSELYYHRDGRPYLLNKRVMLTGEHVINARSTL 291

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK----- 316
           D ++  P V ++ D  GAR F  VTRDNIG P+AVV          ++  +   +     
Sbjct: 292 DAQSGSPAVSVTLDGKGARAFSNVTRDNIGNPMAVVFIESKSETREVDGELIKVRRQVPE 351

Query: 317 --------------AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                          QI+G  +   A  LA +LRAG+L   ++IVEER VG  LG D+I 
Sbjct: 352 IINVATIRDQLSKKFQITGLDSTTEARDLALLLRAGALAAPIDIVEERTVGPSLGQDNID 411

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  +++ G   +++FM+V Y  +GLVA+ ++  N+I  +ALLS+L ATLTLP IAGIVL
Sbjct: 412 QGFASVMIGFAFVLVFMVVWYRVFGLVANIALAANLIFIVALLSMLQATLTLPGIAGIVL 471

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R   S   S+  G+ +A+STI D+NIT LIA +VLF FG 
Sbjct: 472 TVGMAVDANVLIFERIREELRIGNSPQSSISAGYGKAFSTIADANITTLIAAIVLFGFGT 531

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G+++GFA+T+ L I+ SMFTAI   RA++  +   +    + I
Sbjct: 532 GSIKGFAVTLSLGIITSMFTAIMGTRAVVNLVYGRQHKPKLSI 574



 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 101/264 (38%), Gaps = 4/264 (1%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             N   D  G     V      +   V   L  ++       N    ++ L +     G 
Sbjct: 312 FSNVTRDNIGNPMAVVFIESKSETREVDGELIKVRRQVPEIINVATIRDQLSKKFQITGL 371

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                     +  +   +     I     VGP + ++ I +G   V+I    +L+++ + 
Sbjct: 372 DSTTEARDLALLLRAGALAAPIDIVEERTVGPSLGQDNIDQGFASVMIGFAFVLVFMVVW 431

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F L A   L  ++   +   ++      L  +A ++  +G +V+  V++++R+R+ 
Sbjct: 432 YRV-FGLVANIALAANLIFIVALLSMLQATLTLPGIAGIVLTVGMAVDANVLIFERIREE 490

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +++     S +  I     +        ++   I+ + +  +G   I  FA+ ++ GI+ 
Sbjct: 491 LRI---GNSPQSSISAGYGKAFSTIADANITTLIAAIVLFGFGTGSIKGFAVTLSLGIIT 547

Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831
           +  ++I     ++  +Y  + K  
Sbjct: 548 SMFTAIMGTRAVVNLVYGRQHKPK 571


>gi|320540313|ref|ZP_08039965.1| putative SecYEG protein translocase auxillary subunit [Serratia
           symbiotica str. Tucson]
 gi|320029633|gb|EFW11660.1| putative SecYEG protein translocase auxillary subunit [Serratia
           symbiotica str. Tucson]
          Length = 322

 Score =  230 bits (585), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 165/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   GIS+L  + SI  +   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYVAFGISLLLLVASIATMSVRGFNWGLDFTGGTVIEINLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P +L ++R  LE     D   QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PANLDLIRDRLEKAGFQDPIIQNFGSSRDVMVRMPPTTGT-AGQELGNKVINVINDSVDN 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  EL + G + ++++ I +LIY+  RF+W  ALGA+  L  D+  T
Sbjct: 124 HAIVKRIEFVGPSVGSELAQNGGMALLVALICILIYVGFRFEWRLALGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 LGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTLMTSGTTLLVVLMLYIFGGAMLHGFSLAMLIGVSIGTLSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|308050484|ref|YP_003914050.1| protein translocase subunit secF [Ferrimonas balearica DSM 9799]
 gi|307632674|gb|ADN76976.1| protein translocase subunit secF [Ferrimonas balearica DSM 9799]
          Length = 314

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/299 (29%), Positives = 162/299 (54%), Gaps = 4/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F L+     I F++       +SI+  + S+  L   G+N+G+DF GG  + V   + V
Sbjct: 1   MFELLKVKGTIDFLKHAKVVSLLSIVLVVASLVSLGVRGINWGLDFTGGYVIEVNYGKAV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             + +R  +E   I     Q F   ++ +VR+  + G+      ++  V+     +   +
Sbjct: 61  SPADLRRAVEGQDIEGAVVQQFGSARDLIVRIPPKAGEGN---ELVTKVEAAAKGLGNGA 117

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I+  E VGP++ +EL  +G + V+++ I +L Y+  RF+W  ALGA+  L  D+  TLG
Sbjct: 118 EIKRVEFVGPQVGKELAEQGGLAVLVALICILAYVAARFEWRLALGAVIALAHDVIVTLG 177

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  +EF+LT +AA+L ++GYS+ND +VV+DR+R+N +      S   +++ S+ +T+
Sbjct: 178 VFSLLQMEFDLTVLAALLAVVGYSLNDTIVVFDRVRENFRKMRKG-SPEHVVNTSVTQTM 236

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T+      V+ + + GG++I  FA  +  GI V   SSI++A+   + +   R 
Sbjct: 237 SRTIITTGTTLAVVVALFLLGGTMIHGFATALLLGIGVGTYSSIYVASYASIRLGLTRE 295


>gi|255264227|ref|ZP_05343569.1| protein-export membrane protein SecD [Thalassiobium sp. R2A62]
 gi|255106562|gb|EET49236.1| protein-export membrane protein SecD [Thalassiobium sp. R2A62]
          Length = 554

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 193/548 (35%), Positives = 293/548 (53%), Gaps = 32/548 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQ----------------------SMLDRFPSAMPKNR 43
           W  +   +    GLL+ALPN                          +    +PS +P   
Sbjct: 7   WKRVAIWLTIAAGLLLALPNGFYTRVEAHNDANTQIELGITNAQVEADASLWPSFLPSGL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITL 100
           ++LGLDLRGG+HL+ EV  +D     +     E+   L+ E     ++R      +++ +
Sbjct: 67  VNLGLDLRGGAHLLAEVKVEDVYAARMTATWPEVVDVLRSERATFGTIRLQDSAPDELVV 126

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
              +        + V    + V S          +       I + LS+          +
Sbjct: 127 RIGEEAGVPRALELVRGLARPVVSLTGAGASDIDV-RAEGNNIIVTLSEAERLATDERTM 185

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
           +QS+EIIR+RID++G  E TIQR G+ RIL+Q+PG      ++ ++GTTA+++F  V+  
Sbjct: 186 QQSLEIIRRRIDEVGTREPTIQRQGAQRILVQVPGVGSAQEVKDIIGTTAQLTFQPVVGR 245

Query: 221 NSKKGFMFGVR-----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
                   G          D +G  Y++E    ++G  L  A   FD    +P V+  F+
Sbjct: 246 TGSADADAGSSANEIIPSLDEEGVFYILERTPVVTGEELVDAQPAFDQNG-RPAVNFRFN 304

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
             GAR+F + T +NIG P A+VLD  V++AP I   IP G   I+GNF++E +  LA +L
Sbjct: 305 PTGARKFGDYTAENIGSPFAIVLDDEVISAPTIQSHIPGGSGIITGNFSVEESTSLAVLL 364

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           RAG+LP +L  +EER +G +LG DSI  G  A +     ++ FM + YG +GL A+ ++ 
Sbjct: 365 RAGALPAELTFLEERTIGPELGQDSIDAGRIACLVAFAAVLFFMFLSYGLFGLFANVALI 424

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           +NV L   LLSL+GATLTLP IAGIVL IG+AVD+N+L+ ERIREE +  +    ++++G
Sbjct: 425 INVGLIFGLLSLIGATLTLPGIAGIVLTIGMAVDANVLIFERIREELKTAKGPARAIELG 484

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           + +A S I D+NIT  I  V+LF  G G VRGFAIT+GL IL S+FTAI + R +++   
Sbjct: 485 YEKALSAILDANITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLLVVIWF 544

Query: 516 RYKKMKSI 523
             ++ K+I
Sbjct: 545 ERRRPKTI 552



 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +  +++  A+L ++++ +   F L A   LI+++    G  +L G
Sbjct: 380 TIGPELGQDSIDAGRIACLVAFAAVLFFMFLSYGL-FGLFANVALIINVGLIFGLLSLIG 438

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++++R+R+ +K   T+      I+    + L   +  
Sbjct: 439 ATLTLPGIAGIVLTIGMAVDANVLIFERIREELK---TAKGPARAIELGYEKALSAILDA 495

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   +++  ++ R   
Sbjct: 496 NITTFITAVILFAMGSGPVRGFAITLGLGILTSVFTAIFVTRLLVVIWFERRRPK 550


>gi|117926490|ref|YP_867107.1| protein translocase subunit secF [Magnetococcus sp. MC-1]
 gi|117610246|gb|ABK45701.1| protein translocase subunit secF [Magnetococcus sp. MC-1]
          Length = 311

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 105/295 (35%), Positives = 173/295 (58%), Gaps = 3/295 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F+  R   +  S+     S+  LFT GLN+GIDF GG  + V   +P+DL+ VR  
Sbjct: 8   THFDFIGRRKPAIYASLFLIGVSLVSLFTQGLNFGIDFAGGTLIQVRFEKPMDLAPVRQA 67

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS--TIQNTE 655
           +  L +GD   Q+F   +  L+R++ Q  D+ AQ  ++  V   +  I       ++  E
Sbjct: 68  IAPLDLGDTVVQSFGTPEEVLIRVEKQGADNAAQQAIVSGVLDALKPIAGEHGVEMRRVE 127

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP++  EL  KG++ ++ + +A+LIYI  RF+  FALGA+  L+ D+  T+GFF++  
Sbjct: 128 YVGPQVGEELTEKGMLAMLYAMVAILIYISFRFELRFALGAVLALVHDVVLTMGFFSVLQ 187

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            EF L  VAA+LT++GYS+ND +VVYDR+R+ MK          +I++++N TL R++ T
Sbjct: 188 KEFTLVVVAALLTVVGYSLNDTIVVYDRIREEMKRM-KRQPLATIINEAVNRTLSRTLIT 246

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           S+   + ++ + V GG+VI  FA+ + FG+ +   SSIF+A+P++L +     + 
Sbjct: 247 SLTTVLVLIALFVLGGAVIHDFALTLLFGVGIGTYSSIFVASPLVLLMDPGSRRK 301


>gi|326404386|ref|YP_004284468.1| protein-export membrane protein SecF [Acidiphilium multivorum
           AIU301]
 gi|325051248|dbj|BAJ81586.1| protein-export membrane protein SecF [Acidiphilium multivorum
           AIU301]
          Length = 342

 Score =  229 bits (584), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 130/317 (41%), Positives = 204/317 (64%), Gaps = 2/317 (0%)

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
            R+ + +++       F L+PD   IQFM+ RF G+ +S + S  S+ L F  GLN G+D
Sbjct: 9   CRFSEARAMKFLTRPAFRLVPDGTRIQFMKGRFIGLAVSAILSTASVILFFHPGLNLGLD 68

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F+GG+ + V   +  D + +R+ L ++ +   S Q+F G+K  L+ L+ Q      Q  +
Sbjct: 69  FRGGVVIQVATPQKPDFTRLRAELAAVHLPGASLQSFGGDKGVLISLESQDNAKDTQKSL 128

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
               +  + + +P + I +T+ +G  +S  L ++G++ + IS + +L+YIW RF+W FA+
Sbjct: 129 AAA-EGVVKQNLPGAKILSTQAIGASVSATLFQQGLIALGISFLMILVYIWFRFEWQFAV 187

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
           GA+ TLILD+TKT+GF  +  + F+L  +AA+LT+IGYS NDKVVVYDRMR+N++ Y  +
Sbjct: 188 GAVATLILDVTKTIGFMVITRLPFDLVTIAAILTVIGYSTNDKVVVYDRMRENLRKY-KT 246

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
           +  R+LID SINETL R++ TS   F++ LP+A++GG+ +  FA  M FGIVV  SSSI+
Sbjct: 247 MPLRELIDLSINETLNRTLGTSSTVFLAALPLALFGGASLSGFAWVMLFGIVVGTSSSIY 306

Query: 815 IAAPILLFIYDWRAKNA 831
           IAAPILL + + R +  
Sbjct: 307 IAAPILLLLGEHRLRRG 323


>gi|145299553|ref|YP_001142394.1| protein-export membrane protein SecD [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852325|gb|ABO90646.1| protein-export membrane protein SecD [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 617

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 170/530 (32%), Positives = 286/530 (53%), Gaps = 35/530 (6%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N  P +    +  A+    + LGLDLRGG H ++EVD  + +    +    + R+
Sbjct: 99  FITALNLAPSTP--AWLEAIGAAPLKLGLDLRGGVHFLMEVDMAEALTKQQEQMVQDFRT 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+ + I    +R++ +++ + F D   +      +           N D          
Sbjct: 157 ELRTQKIRYSGVRRVGDQVQVLFRDEADQAKAVSHLRRQ--------NPDLTFTTEQKGD 208

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           E  +   LS+  I +V  +A+EQ++ IIR R++++G++E  +Q+ G+ RI+++LPG QD 
Sbjct: 209 EFILLAGLSEAKIKEVKKYALEQNITIIRNRVNELGVAEPLVQQQGAERIVVELPGIQDT 268

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHL 254
           +R +++LG TA + FH V      +    G          D +G   +++ +V ++G H+
Sbjct: 269 ARAKEILGATATLEFHMVDETADIQAAADGRVPPSSKVYNDRNGRPVVLQKRVILTGDHI 328

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV------- 307
            GA + FD  + +P V+I  D  G  +    T+DN+GK +A V                 
Sbjct: 329 VGAQSGFDEYS-RPQVNIKLDGQGGNKMANFTKDNVGKGMATVFIEYKPVGQPGPDGKRK 387

Query: 308 -----------INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                        Q+    + +I+G      A  LA +LRAG+L   + IVEER +G  L
Sbjct: 388 FRKQEEVINVATIQSRLGSQFRITGIDNANEAHNLALLLRAGALIAPIQIVEERTIGPSL 447

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415
           G  +I  G  AI   +++IVLFM + Y  +G VA+ ++ +N++L + ++S++  AT+TLP
Sbjct: 448 GQQNIDSGMEAIGWAMLVIVLFMGIYYRAFGWVANLALTMNLVLIVGIMSMIPGATMTLP 507

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVD+N+L+ ERIREE R  + V  ++ +GF RA+STI DSN+T+LI  V
Sbjct: 508 GIAGIVLTLGMAVDANVLIYERIREEIRNGRGVQQAIHLGFDRAFSTIADSNVTSLITCV 567

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +LF  G GA++GFA+T+G+ +  SMFTAI++ RA++      +++  + I
Sbjct: 568 ILFGIGTGAIKGFALTLGIGLSASMFTAITVSRAIINLGWGGRRIDKLPI 617



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 86/205 (41%), Gaps = 6/205 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A       +  +   ++    I     +GP + ++ I  G+  +  + + +++++ I 
Sbjct: 414 DNANEAHNLALLLRAGALIAPIQIVEERTIGPSLGQQNIDSGMEAIGWAMLVIVLFMGIY 473

Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           ++  F   A   L +++   +G  ++  G    L  +A ++  +G +V+  V++Y+R+R+
Sbjct: 474 YR-AFGWVANLALTMNLVLIVGIMSMIPGATMTLPGIAGIVLTLGMAVDANVLIYERIRE 532

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++        +  I    +        +++ + I+ + +   G   I  FA+ +  G+ 
Sbjct: 533 EIR---NGRGVQQAIHLGFDRAFSTIADSNVTSLITCVILFGIGTGAIKGFALTLGIGLS 589

Query: 807 VAASSSIFIAAPILLF-IYDWRAKN 830
            +  ++I ++  I+       R   
Sbjct: 590 ASMFTAITVSRAIINLGWGGRRIDK 614



 Score = 41.6 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 32/118 (27%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   +  IG L A PN   +    +  SA     + L               
Sbjct: 4   RYPLWKYLMVVFVIAIGFLYAAPNLYGEDPALQI-SASRGAEVKL--------------- 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                   L    + L +      I V         I + F ++  +    D V   L
Sbjct: 48  ------ETLDQVKETLEAA----QIPVKHAAFEHGFILIRFKNTEDQLKARDVVASKL 95


>gi|39997711|ref|NP_953662.1| preprotein translocase subunit SecD [Geobacter sulfurreducens PCA]
 gi|39984603|gb|AAR35989.1| protein-export membrane protein SecD [Geobacter sulfurreducens PCA]
 gi|298506645|gb|ADI85368.1| protein export membrane protein SecD [Geobacter sulfurreducens
           KN400]
          Length = 533

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 187/534 (35%), Positives = 285/534 (53%), Gaps = 23/534 (4%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           W   L ++   + LL   P  +       +   +PK+RI LGLDL+GG+HLV+EV+    
Sbjct: 7   WRFSLIALFITLSLLYLTPTLVSPLP-SWWKGLLPKDRIHLGLDLQGGTHLVMEVETQKA 65

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           V G L + + +L   L  + +    + RQ  +++ ++F D    +     +         
Sbjct: 66  VEGTLDLIATDLEDALSAKTLRYKQIARQGGDRVGMTFYDRGTADEAQKLLKDKY----- 120

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                             + + +++    +    A+ Q++E IR RIDQ G+SE  I R 
Sbjct: 121 --PTMTLVPPYDEGGFVHLQLRMNEKEAQERKDRAVAQALETIRNRIDQFGVSEPVIARE 178

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------- 237
           G   I++QLPG  DP R  +L+G TA++ F  V    +      G               
Sbjct: 179 GLTNIVVQLPGISDPKRAIELIGRTARLEFKLVDETVNPAIATPGTIPEDTEILMEKRTD 238

Query: 238 -------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                       V+ K  I+G  L  A    D + ++P V I F+  GAR F +VT  N+
Sbjct: 239 PTTGAVTEIPLAVKKKAIITGDLLTDAQIRIDSQFNQPYVAIEFNSTGARLFDQVTAANV 298

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           GK  A+VLD  + +APVI + I  G AQISG+FT + A  LA +LRAGSLP  + I++  
Sbjct: 299 GKRFAIVLDNTIYSAPVIRERISGGSAQISGSFTEKEAADLAIVLRAGSLPAPVKIIQNV 358

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG  LG DSI KG  A   G+ L++LFM + Y   G+VA+F + LNV+  +  L+ LGA
Sbjct: 359 TVGPSLGEDSINKGLMAGAIGVALVILFMGIYYKLSGMVANFGMILNVLFLMGALAALGA 418

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IA IVL IG++VD+N+L+ ERIREE R  ++   +LD G+ +A+ TI DS++T 
Sbjct: 419 TLTLPGIAAIVLLIGMSVDANVLIFERIREELRLGKTPIAALDSGYDKAFLTIMDSHVTT 478

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           LI   VLF FG G V+GFA+++ L ++I++FTA+   +A+  F++   ++K + 
Sbjct: 479 LITAAVLFQFGTGPVKGFAVSLSLGVIINLFTALVGTKAIFDFVLNRLRVKRLS 532



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 83/174 (47%), Gaps = 5/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I KG++   I    +++++ I +K    + A   +IL++   +G  A  G  
Sbjct: 361 GPSLGEDSINKGLMAGAIGVALVILFMGIYYKLS-GMVANFGMILNVLFLMGALAALGAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +AA++ LIG SV+  V++++R+R+ ++L     +    +D   ++     + + +
Sbjct: 420 LTLPGIAAIVLLIGMSVDANVLIFERIREELRL---GKTPIAALDSGYDKAFLTIMDSHV 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
              I+   +  +G   +  FA+ ++ G+++   +++     I    +   R K 
Sbjct: 477 TTLITAAVLFQFGTGPVKGFAVSLSLGVIINLFTALVGTKAIFDFVLNRLRVKR 530


>gi|218885645|ref|YP_002434966.1| preprotein translocase subunit SecD [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756599|gb|ACL07498.1| protein-export membrane protein SecD [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 532

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 183/535 (34%), Positives = 282/535 (52%), Gaps = 22/535 (4%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W + +   +   G    LP+ LP          +P + ISLGLDL GG HL L VD D 
Sbjct: 6   RWRLAVVLAVLLFGAAYVLPS-LPGIKSSPLGRFLPDSAISLGLDLMGGIHLTLGVDVDK 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQI-QNKITLSFADSRFKENIADKVTLFLQGVN 123
            V   L     ++R+  +++ + V   R +  ++I    A +  ++ + + +      + 
Sbjct: 65  AVENSLTQMGQDIRTSAREKDVFVLRPRVLPGDRIEFVLAKAEQRDVLGELLAKQFHQL- 123

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                           +      +       +   A+EQ+++ IR RIDQ G++E  I++
Sbjct: 124 -----SVAAPQTTDDGQLRYVATMKPEYRKNISDMALEQAVKTIRNRIDQFGVAEPDIRK 178

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG----- 238
              +RI IQLPG  D  R  Q++G TA + FH V  +   +    G+             
Sbjct: 179 QQDNRIQIQLPGLHDTQRAIQIIGQTAHLEFHIVRDDVDAEKAARGILPPGTEVRPMIRR 238

Query: 239 --------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                      +V+ +  ++G ++  A   F    ++  V ++F+  GA  F  +T++N+
Sbjct: 239 GADGSQAETPVVVDKEAVLTGEYVADARPGF-DNFNQAYVMLTFNSRGAAMFERITQENV 297

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
            K LA+VLDG+V +APVI + I  G+A I+G F+   A  LA +LRAGSLP  ++++EER
Sbjct: 298 RKRLAIVLDGKVYSAPVIQEKIGGGRASITGKFSTAEAQDLAIVLRAGSLPAPVSVLEER 357

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG  LG +SI KG  A V G   +++FM+V YG  GL+AD  +   V+L LA ++  GA
Sbjct: 358 TVGPSLGQESIDKGILAAVVGGAAVMIFMVVYYGVSGLIADVMLCFTVLLILAGMAAFGA 417

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP +AGIVL +G+AVD+N+L+ ERIREE RK  +V  ++  GF RA   I DSN+T 
Sbjct: 418 TLTLPGLAGIVLTLGMAVDANVLIYERIREELRKGHTVLSAIHEGFDRATLAITDSNLTT 477

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +IA+ +L+ FG G VRGFA+T+ L I+ SMFTAI + R +          K + I
Sbjct: 478 IIASAILYQFGTGPVRGFAVTLSLGIIASMFTAIFVSRVVFQAWKGGSGDKRLSI 532



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/239 (19%), Positives = 103/239 (43%), Gaps = 5/239 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             +    VR  L  +  G +       EK    R       S A+ + L +V +  +   
Sbjct: 290 ERITQENVRKRLAIVLDGKVYSAPVIQEKIGGGRASITGKFSTAEAQDLAIVLRAGSLPA 349

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P+S ++   + GP + +E I KGI+  ++   A++I++ + +     L A   L   +  
Sbjct: 350 PVSVLEERTV-GPSLGQESIDKGILAAVVGGAAVMIFMVVYYGVS-GLIADVMLCFTVLL 407

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L   A FG    L  +A ++  +G +V+  V++Y+R+R+ ++      +    I +  +
Sbjct: 408 ILAGMAAFGATLTLPGLAGIVLTLGMAVDANVLIYERIREELR---KGHTVLSAIHEGFD 464

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                   +++   I+   +  +G   +  FA+ ++ GI+ +  ++IF++  +      
Sbjct: 465 RATLAITDSNLTTIIASAILYQFGTGPVRGFAVTLSLGIIASMFTAIFVSRVVFQAWKG 523


>gi|149186992|ref|ZP_01865300.1| preprotein translocase subunit [Erythrobacter sp. SD-21]
 gi|148829381|gb|EDL47824.1| preprotein translocase subunit [Erythrobacter sp. SD-21]
          Length = 532

 Score =  229 bits (583), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 181/535 (33%), Positives = 303/535 (56%), Gaps = 18/535 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W  ++   I  +G L ALP+       + +P  +P   ++LGLDL GGSH++LE 
Sbjct: 2   LEFPTWKKVMLWGIAILGALAALPSIAS-LTNNDWPDQLPDPTVNLGLDLAGGSHILLEA 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +        L+   + +R+ L++   + I +  +      ++    D+   +    ++  
Sbjct: 61  ERSQVAAKRLEDMEEGVRNALRRAEPQRIRIGDVSTEDGALSFLLDDAADIDRARGEIED 120

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + G         ++  L     +   +  ++  +D  +  A+E ++  I  R+D++G  
Sbjct: 121 LMAGTGP-----VREWDLQVVDGQRFVLTPTEAGLDNAVDAAMEGALRTIGIRVDELGTR 175

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF----- 232
           E TI R G  RI++Q+PG QDP +L++LLG TA++ F  V  + + +    G        
Sbjct: 176 EPTILRQGDTRIVVQVPGLQDPDQLKELLGKTAQLEFKLVERDATAEEVQRGFVPGGEVY 235

Query: 233 ----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                    G   +V+    I G  L GA   FD +T++PVV I+F+  G RRF  +T  
Sbjct: 236 PYADTETYQGTGVVVQRLGGIDGETLTGAVQTFDSQTNEPVVSITFNPEGGRRFATMTTK 295

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
             G+  A++LD  V++APV+ + I +G++QISG+FT E+A  LA  LR+G+LP+ L +VE
Sbjct: 296 YTGRQFAIILDDEVISAPVMREPIANGQSQISGSFTTESANELAIQLRSGALPVDLTVVE 355

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER VG DLG+DSI +G  A+  G +L+++ MIV YG++G+ A  ++ LNV++ L ++++L
Sbjct: 356 ERTVGPDLGADSIKQGLLAMGIGTLLVMVLMIVTYGRFGIYATVALVLNVMMLLGIMAML 415

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GATLTLP IAG VL IG AVD+N+LVNERIREE ++ + V  +++ G+  A   I+D+N+
Sbjct: 416 GATLTLPGIAGFVLTIGAAVDANVLVNERIREERKRGRRVMAAVENGYKEASRAIYDANV 475

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           T  IA V+LF FG G ++GFA+ + + +  S+FTA+ + R  +   +R  +   +
Sbjct: 476 TNFIAGVLLFQFGSGPIKGFAVVLVVGLFTSVFTAVPLTRMWVAGWLRKARPSDL 530



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 91/249 (36%), Gaps = 10/249 (4%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      R     L    IS                    + +   +   ++    
Sbjct: 288 RFATMTTKYTGRQFAIILDDEVISAPVMREPIANGQSQISGSFTTESANELAIQLRSGAL 347

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +      +    VGP +  + I++G++ + I  + +++ + + +   F + A   L+L+
Sbjct: 348 PVDLTVVEER--TVGPDLGADSIKQGLLAMGIGTLLVMVLMIVTYG-RFGIYATVALVLN 404

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   LG  A+ G    L  +A  +  IG +V+  V+V +R+R+  K           ++ 
Sbjct: 405 VMMLLGIMAMLGATLTLPGIAGFVLTIGAAVDANVLVNERIREERKRGRR---VMAAVEN 461

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              E        ++  FI+ + +  +G   I  FA+ +  G+     +S+F A P+    
Sbjct: 462 GYKEASRAIYDANVTNFIAGVLLFQFGSGPIKGFAVVLVVGL----FTSVFTAVPLTRMW 517

Query: 824 YDWRAKNAR 832
                + AR
Sbjct: 518 VAGWLRKAR 526


>gi|103487199|ref|YP_616760.1| preprotein translocase subunit SecD [Sphingopyxis alaskensis
           RB2256]
 gi|98977276|gb|ABF53427.1| protein-export membrane protein SecD [Sphingopyxis alaskensis
           RB2256]
          Length = 537

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 186/535 (34%), Positives = 307/535 (57%), Gaps = 19/535 (3%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             W  I  S+I  +G+L A+P+FLP    +  P       ++LGLDL GGSHL+LE D +
Sbjct: 5   PRWKTIGISIILLLGVLFAIPSFLPPKAFESLPGFAQAK-VNLGLDLAGGSHLLLEADIN 63

Query: 64  DFVNGFLQMYSDELRSFLKKE-----GIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           D     L      +R+ ++ +      I +  +     +I+    D+   +   +++   
Sbjct: 64  DLRKTQLTNMEKTVRTAMRGQSGPDDDIAIGELSTTGGRISFLVRDAAKLDAARERL--- 120

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                       +   +       I +  +     Q +++A++ + +II +R++ +G  E
Sbjct: 121 FSETQGAGLTGQRDWNIDVVDSTRIVMSPTSAGQTQAVANAMDTARDIIDKRVNALGTRE 180

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233
            TI R G+ RI++Q+PG QDP+ L++L+G TA++ F  V  N        G   +     
Sbjct: 181 PTIIREGADRIVVQVPGLQDPAALKELIGKTARLEFRMVDANADPAEAAAGRVPVGSEIV 240

Query: 234 -----RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                  +     ++  +V ISG  L  A  ++DP+T +PVV I FD  G+  F +VT  
Sbjct: 241 PYAEGEGNGAAFEVLRRQVMISGEQLINAQQSYDPQTSEPVVSIRFDSAGSSTFAKVTAQ 300

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           N+GK  A+VLDG+VL+AP IN+ I  G AQISG+F++ +A  LA  LR+G+LP+K+ +VE
Sbjct: 301 NVGKRFAMVLDGKVLSAPSINEPILGGSAQISGSFSVASANNLAISLRSGALPVKMTVVE 360

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER V  +LG+DSI KG  A +   V ++ FMI++YG++G+ A+ ++  N+ L +A+++  
Sbjct: 361 ERTVTPELGADSIRKGAIAGIIATVAVLAFMIIVYGRFGIYANVALIFNIGLIIAIMAAF 420

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLTLP IAG VL IG AVD+N+L+NERIREE ++ + VF ++++G+S A   IFD+NI
Sbjct: 421 NATLTLPGIAGFVLTIGAAVDANVLINERIREELKRGRRVFQAVELGYSEASRAIFDANI 480

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           T +IA  ++F+FG G ++GFA+ + + I+ S+FTA+++ R      +   +  S+
Sbjct: 481 TNVIAAGLMFWFGSGPIKGFAVVLTIGIITSVFTAVTVTRLFAARWLHKTRPASL 535



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/182 (20%), Positives = 76/182 (41%), Gaps = 4/182 (2%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             T+     V P++  + IRKG +  II+ +A+L ++ I +   F + A   LI +I   
Sbjct: 355 KMTVVEERTVTPELGADSIRKGAIAGIIATVAVLAFMIIVYG-RFGIYANVALIFNIGLI 413

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +   A F     L  +A  +  IG +V+  V++ +R+R+ +K           ++   +E
Sbjct: 414 IAIMAAFNATLTLPGIAGFVLTIGAAVDANVLINERIREELKRGRR---VFQAVELGYSE 470

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                   ++   I+   M  +G   I  FA+ +  GI+ +  +++ +            
Sbjct: 471 ASRAIFDANITNVIAAGLMFWFGSGPIKGFAVVLTIGIITSVFTAVTVTRLFAARWLHKT 530

Query: 828 AK 829
             
Sbjct: 531 RP 532


>gi|283850331|ref|ZP_06367620.1| protein-export membrane protein SecD [Desulfovibrio sp. FW1012B]
 gi|283574357|gb|EFC22328.1| protein-export membrane protein SecD [Desulfovibrio sp. FW1012B]
          Length = 534

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 187/533 (35%), Positives = 286/533 (53%), Gaps = 25/533 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  W ++  S++  +GL+  LP+             +P + I+LGLDL+GG HL L VD 
Sbjct: 4   NLRWRLVCISLVAFLGLIYMLPSVGSVKQ-TFLGKFLPDDVINLGLDLKGGIHLTLGVDV 62

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIG--VFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D  +   L     ++R   K+EGI            ++T        ++ + D ++   Q
Sbjct: 63  DKALANSLAQMGRDIRDQAKEEGIVLQRPESTADGRQLTFILNTPDKRQELDDLLSRHFQ 122

Query: 121 -GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V   +        +         +  S           ++Q+++ IR RID+ G++E 
Sbjct: 123 VLVVDGVESAADGKYVYK-------LSFSPRYKADQARMTVDQAVKTIRNRIDEFGVAEP 175

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG- 238
            I++   +RI IQLPG  DP R  +L+G TA + F  V  N        G+    +    
Sbjct: 176 DIRKQADNRIQIQLPGLHDPERAIKLIGKTAHLEFKVVDDNADLDKAQKGLVPPGEELSV 235

Query: 239 ------------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                          ++  +  ++G ++  A A F   T++  V +SF   GAR+F  VT
Sbjct: 236 LRHRNPDGSYLERPIVLRSEAVMTGENIADARAGF-DNTNQAYVGLSFTPSGARQFERVT 294

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
            +N+ K LA+VLDG+V +AP I + I  G+A I+G F+ E A  LA +LRAG+LP  + I
Sbjct: 295 GENVKKRLAIVLDGKVYSAPTIQEKISGGRASITGRFSTEEARDLAIVLRAGALPAPVTI 354

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +E+R+VG  LG +SI KG  + V G VL+V FMI+ YG  G VAD ++  N++L +A L+
Sbjct: 355 LEQRSVGPSLGQESIEKGVYSAVVGGVLVVAFMILYYGVAGAVADMALVFNLMLIMAGLA 414

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
             GATLTLP IAGI+L IG+AVD+N+++ ERIREE R+  +   ++D G+SRA  TI D+
Sbjct: 415 GFGATLTLPGIAGIILTIGMAVDANVIIFERIREEVRRGLTARSAVDTGYSRATLTILDA 474

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           N+T +IA  VL+ FG G +RGFA+T+ L I+ SMFTAI   R +    +  + 
Sbjct: 475 NVTTVIAAAVLYQFGTGPIRGFAVTLILGIVASMFTAIFFTRFLFDLWLSKRP 527



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 78/174 (44%), Gaps = 4/174 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VGP + +E I KG+   ++  + ++ ++ + +       A   L+ ++   +   A 
Sbjct: 357 QRSVGPSLGQESIEKGVYSAVVGGVLVVAFMILYYGV-AGAVADMALVFNLMLIMAGLAG 415

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  IG +V+  V++++R+R+ ++     ++ R  +D   +      +
Sbjct: 416 FGATLTLPGIAGIILTIGMAVDANVIIFERIREEVR---RGLTARSAVDTGYSRATLTIL 472

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             ++   I+   +  +G   I  FA+ +  GIV +  ++IF    +       R
Sbjct: 473 DANVTTVIAAAVLYQFGTGPIRGFAVTLILGIVASMFTAIFFTRFLFDLWLSKR 526


>gi|326319353|ref|YP_004237025.1| protein-export membrane protein SecD [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323376189|gb|ADX48458.1| protein-export membrane protein SecD [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 632

 Score =  229 bits (582), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 171/514 (33%), Positives = 282/514 (54%), Gaps = 21/514 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N + +S    + +A+    + LGLDLRGG H +L+VD    +    + ++ +LR+
Sbjct: 104 YIVALNLVSRSP--AWLTALHAQPVYLGLDLRGGVHFMLQVDMQAALTKKAESFAGDLRT 161

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
           F++   I    + +    I +   D        + ++     + +  + D +  ++    
Sbjct: 162 FMRDRNIRHGGISRDGQTIEVRLRDEAAATATRNLISDQFPDLVATSSPDGQGVIV---- 217

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
                  +    + +V   A++Q+M  +  RI+++G++E  IQ+ G+ RI++QLPG QD 
Sbjct: 218 ----RATIKPEALRKVQDQALKQNMTTLHNRINELGVAEPVIQQQGTDRIVVQLPGVQDT 273

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDSDGNQYLVEDKVEISGI 252
           ++ + +LG TA +    V  +   +G   G            D +G   +V+ +V ++G 
Sbjct: 274 AKAKDILGRTATLEVRMVDESTEARGAERGSGPVPFGSERYPDRNGQFVIVKKQVILTGE 333

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308
           +L  A   FD +T +P V+++ D  GAR F ++TR+NIGK +         G V+TAPVI
Sbjct: 334 NLTDAQPGFDGQTQEPTVNLTLDAKGARIFKDITRENIGKRMAIVLFEKGKGEVVTAPVI 393

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I  G+ QISG  T   A   + +LRAGSL   + I+EE  +G  LG+D+I +G  ++
Sbjct: 394 RSEIGGGRVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEFTIGPSLGADNISRGIHSV 453

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
           V G+V I +FM V Y  +G+ +  ++ +NV++ +A+LS+L ATLTLP IA + L +G+A+
Sbjct: 454 VWGMVAIAVFMCVYYALFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAI 513

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           DSN+L+NERIREE R   +   ++  G+ RA++TI DSN+T LIA + L  FG G VRGF
Sbjct: 514 DSNVLINERIREELRAGVAPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGSGPVRGF 573

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           A+   L IL SMF+A+   R ++      KK   
Sbjct: 574 AVVHCLGILTSMFSAVFFSRGLVNLWYGRKKKLK 607



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 87/212 (41%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I +GI  V+   +A+ 
Sbjct: 402 VQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEFTIGPSLGADNISRGIHSVVWGMVAIA 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + +   F + +   L +++   +   ++      L  +AA+   +G +++  V++ 
Sbjct: 462 VFMCVYYAL-FGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     ++ +  I           + +++   I+ L +  +G   +  FA+  
Sbjct: 521 ERIREELRA---GVAPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++F +  ++   Y  + K   +
Sbjct: 578 CLGILTSMFSAVFFSRGLVNLWYGRKKKLKSV 609


>gi|91763286|ref|ZP_01265250.1| preprotein translocase chain secF [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91717699|gb|EAS84350.1| preprotein translocase chain secF [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 295

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 106/294 (36%), Positives = 181/294 (61%), Gaps = 5/294 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSVVRSNL 598
           I F +       IS+   I S+ LLF  GLN+G+DFKGG  + + + ++ ++++ +R + 
Sbjct: 2   INFNKFYKLFNLISLSLVIASVLLLFFKGLNFGVDFKGGTLIELRSNDKNINVTSLRQSF 61

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
             + +GD + + F  E +FL++++ +   + A   + + +   +         +  E VG
Sbjct: 62  NKMNLGDFNIKKFGNENDFLIKIEKKDTSANAIEVIKKDLTSSL---GSSFNFRRVENVG 118

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           PK+S EL++ GI+ + +S  AML YIWIRF+W F+LGAI  L  D+  TLG F+LF +E 
Sbjct: 119 PKVSSELLKSGIIAIALSLAAMLFYIWIRFEWQFSLGAILALFHDVIITLGLFSLFSLEI 178

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           NL+ VAAVLT++GYS+ND VV+YDR+R+N++ + + I   +L + SINETL R++ TS  
Sbjct: 179 NLSIVAAVLTIVGYSMNDTVVIYDRVRENLRKF-SDIKIYELTNISINETLSRTIITSAT 237

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             ++++ + ++GG ++  F++ M  G+V    SSI+IA PIL+ +   +    +
Sbjct: 238 TLLALVSIYLFGGEILKGFSLAMIMGVVFGTYSSIYIANPILVKLRVSQKTILK 291


>gi|313114095|ref|ZP_07799647.1| protein-export membrane protein SecF [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310623504|gb|EFQ06907.1| protein-export membrane protein SecF [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 778

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 153/749 (20%), Positives = 286/749 (38%), Gaps = 59/749 (7%)

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
             K        +  +++    ++        +E +  +I  R+  + +++  +    +  
Sbjct: 42  GAKDIRFGVDIKGGVNVTFVPSDGYDATEEQLEAAQLVIENRLVALNVTDYELYVDNNSD 101

Query: 189 ILIQLPGEQ------DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            LI     Q      DP      +GTTA ++F +    + +      +     +      
Sbjct: 102 SLILEFPWQSGETDFDPEAAIDEIGTTAYLTFREGSSADGELILDGSMIESAAAQYGPVS 161

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                E                + K   D +     A      +   I   L        
Sbjct: 162 NGGASE-------------YFVSLKFTDDGAKAFGDATTKLAASGGTISIWLDDENVSTA 208

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                I        +  S  FT E    +A  + +G+LP  L +     V   LG +S+ 
Sbjct: 209 TVNTAITDGSAIITSSASNPFTQEQVVKMARQINSGALPFALTVDSYSTVSPSLGENSLS 268

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-----ATLTLPSI 417
               A +    LIV+FM +LY   G +A  ++   V  TLA +S         T+TLP I
Sbjct: 269 AMVLAGLIAFALIVVFMTMLYRLPGFLACIALAGQVAATLAFVSGYFPAFESFTMTLPGI 328

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI+L IG+ VD+N++  ERI+EE +  +S+  +L  GF+R  + I D N+T +I  +VL
Sbjct: 329 AGIILAIGMGVDANVITAERIKEELKNGKSLDGALKSGFARGLTPIVDGNVTIVIVAIVL 388

Query: 478 FFFGGGAV----------------------RGFAITMGLSILISMFTAISIVRAMMIFII 515
               G +                         F  T+   +L++    +   R M+    
Sbjct: 389 MGAFGPSDGMFAKALHFVFFAFGPSTAGTIYAFGYTLLTGVLLNFVFGVFATRVMIRGAA 448

Query: 516 RYKKMKSID-INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
             K +++              +   I F+  R   + IS       +      G++   +
Sbjct: 449 SIKALRNPWLYGAEKPGKEKAEKKPIDFVGLRKRFLTISSCLMAAIVLCAVVLGVHLDTE 508

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFLVRLQYQPGDSVAQT 632
           F GG  + +       +S V+    S    +                     PG     T
Sbjct: 509 FTGGAMITLSYEGSFTMSDVQKVASSALENNGLTLQTGENVATGDQTLKISMPGTETVTT 568

Query: 633 RVLEMVKKKITE--IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
             +  +   + E          +   V   +  + ++K +V V+ + + +L+YI +RFK 
Sbjct: 569 EQVAKLLDSLNESCPDNNFEQLSLSNVSAAMGTKFLQKSLVAVVFALVLILLYIALRFKN 628

Query: 690 ---WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                  + A+  L+ D+    G F L     +   +AA+LT++GYS+ND VVVYDR+R+
Sbjct: 629 IGGLTGGMMAVLALVNDLMVVFGTFVLLRTALDGNFIAAMLTILGYSINDTVVVYDRIRE 688

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV----WGGSVIGSFAIPMA 802
           N  L     SF +L++ S+N++  R++ T++   +++  M +    +G   I +FA P+ 
Sbjct: 689 NRTLMGKKASFEELVNHSVNQSARRTLITTITTVMALGVMCIVAKLYGLDSIFTFAFPLM 748

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++    +S+ ++    +   + + K  
Sbjct: 749 MGMISGVYTSLCVSTSAWVLWSERKPKTK 777


>gi|328543823|ref|YP_004303932.1| Protein translocase subunit secF / protein translocase subunit secD
           [polymorphum gilvum SL003B-26A1]
 gi|326413567|gb|ADZ70630.1| Protein translocase subunit secF / protein translocase subunit secD
           [Polymorphum gilvum SL003B-26A1]
          Length = 318

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 127/296 (42%), Positives = 186/296 (62%), Gaps = 4/296 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIPD   ++FM  R +    S L ++ S+ L FT GLNYGIDFKGG  + +  + P D+
Sbjct: 5   RLIPDNTKLRFMWLRKYSFPFSALVAVASLALFFTVGLNYGIDFKGGTLIEMKTDGPADI 64

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             VRS L +L +G++  Q F      L+R++ Q G  +AQ  V+  ++      V     
Sbjct: 65  GAVRSRLGALNLGEVQVQEFGAPDEVLIRVEQQEGGELAQQAVIATIRTAFEGEVEF--- 121

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  EIVGP++S EL R G +GV  + +A+L YIW RF+W FA+GAI T   D+  T+G F
Sbjct: 122 RRVEIVGPRVSGELARAGSIGVAAALVAILFYIWFRFEWQFAIGAILTTFNDVLVTVGLF 181

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L  ++F+L+++AAVLT+IGYS+ND VVVYDR+R+N++ Y   +S  DL+D+SINETL R
Sbjct: 182 VLLQLDFSLSSIAAVLTIIGYSLNDTVVVYDRIRENLRRY-KKLSLPDLLDRSINETLAR 240

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  TS+   +++  + ++GG VI SF + M FGIV+   SSIF+AAP L+      
Sbjct: 241 TTMTSVTTLLALFALYIFGGEVIRSFTLAMIFGIVIGTYSSIFLAAPFLILFNLRS 296


>gi|313895587|ref|ZP_07829143.1| export membrane protein SecF [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975713|gb|EFR41172.1| export membrane protein SecF [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 308

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 143/295 (48%), Gaps = 1/295 (0%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R     IS+L  I     +   G N+GIDF GG  + +    PV L+ +R+
Sbjct: 1   MPKFDIAGHRRIFFLISLLMIIPGFICMGVRGFNFGIDFTGGTIIDLHFEHPVTLADIRT 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L    + + + Q    E                +    + V   +T+ V   T+   E 
Sbjct: 61  SLAKYDLDNSTIQLSGTESGVESSENAMIRTVDLEENQRKEVMAALTQDVGPYTVLREEK 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  I  ELI   ++ ++IS   +++Y+  RF+W F + A+  L+ DI   L  F+L   
Sbjct: 121 VGATIGGELITNAVLALVISWALIILYVAYRFEWRFGVSAVLALVHDIIIVLAVFSLTQR 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775
           + + + +AA+LT++GYS+ND +V++DR+R+N+KL+        +L+++SI +TL RS+YT
Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDVDELVNRSIYQTLTRSLYT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                 +   +  +GG     FA  +  G  V   SSIFIA+ I + + +   + 
Sbjct: 241 VFTVLFTTAALYWFGGETTKDFAFALLVGFAVGCYSSIFIASQIWIELRNRTERR 295


>gi|319796463|ref|YP_004158103.1| protein-export membrane protein secd [Variovorax paradoxus EPS]
 gi|315598926|gb|ADU39992.1| protein-export membrane protein SecD [Variovorax paradoxus EPS]
          Length = 651

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 151/519 (29%), Positives = 270/519 (52%), Gaps = 27/519 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L+   P++L                + LGLDLRGG   +L+VD    ++   + +
Sbjct: 126 VVALNLVSRSPHWLTALHA---------FPMYLGLDLRGGVDFLLQVDMRGVLDKKAESF 176

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+ + +   ++ +    + ++  D+   E     +   +         D    
Sbjct: 177 AGDIRAGLRDKKVRGSAVNRNGQTVEITLRDAASLEIARRMLQDQM--------PDLSTV 228

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                TE  I   +      +    A++Q++  +  RI+++G++E  IQ+ G  RI++QL
Sbjct: 229 ESQQGTESRIVASIKPEAARRFQDAALKQNVTTLHNRINELGVAEPVIQQQGLDRIVVQL 288

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDK 246
           PG QDP++ + ++G TA +    V  +   +    G   +        D  G   +V+ +
Sbjct: 289 PGMQDPAQAKTIIGRTATLEMRLVDESTEGRAAEQGTGPVPFGSEKFLDRSGRAVIVKKQ 348

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VL 303
           V ++G +L  A   F+ +T++P VD++ D  G     +V+ +N  K +A+++  +    +
Sbjct: 349 VLVTGENLTDAQPGFEQQTNQPKVDLTMDSKGGNIMRQVSIENYKKRMAMLIFEKGKGEV 408

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       + Q+SG  T+  A  LA +LRAGSL   + I++ER +G   G+++I K
Sbjct: 409 LTAPSINGELGNRFQVSGAMTVSEANDLALLLRAGSLAAPMEIIQERTIGPTQGAENIKK 468

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  +++ G   I++FM + Y  +G+ +  ++ +N++L +A+LS+L ATLTLP IA + L 
Sbjct: 469 GFDSVMYGFAAIMVFMCLYYALFGIFSSIALAVNLMLLVAILSILQATLTLPGIAAMALA 528

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           IG+A+DSN+L+NER+REE R   S   ++  G+ RA+ TI DSNIT LIA + L  FG G
Sbjct: 529 IGVAIDSNVLINERVREELRNGASPQAAIHAGYERAWGTILDSNITTLIAGIALLAFGSG 588

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            VRGFA+   + I+ SMF+A+   R ++ F    KK   
Sbjct: 589 PVRGFAVVHCIGIVTSMFSAVFFSRGLVNFWYGQKKKLK 627



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 88/219 (40%), Gaps = 4/219 (1%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              L       G           +  +   +     I     +GP    E I+KG   V+
Sbjct: 415 NGELGNRFQVSGAMTVSEANDLALLLRAGSLAAPMEIIQERTIGPTQGAENIKKGFDSVM 474

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
               A+++++ + +   F + +   L +++   +   ++      L  +AA+   IG ++
Sbjct: 475 YGFAAIMVFMCLYYAL-FGIFSSIALAVNLMLLVAILSILQATLTLPGIAAMALAIGVAI 533

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++ +R+R+ ++      S +  I        G  + +++   I+ + +  +G   +
Sbjct: 534 DSNVLINERVREELR---NGASPQAAIHAGYERAWGTILDSNITTLIAGIALLAFGSGPV 590

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FA+    GIV +  S++F +  ++ F Y  + K   +
Sbjct: 591 RGFAVVHCIGIVTSMFSAVFFSRGLVNFWYGQKKKLKSV 629


>gi|260575193|ref|ZP_05843193.1| protein-export membrane protein SecD [Rhodobacter sp. SW2]
 gi|259022453|gb|EEW25749.1| protein-export membrane protein SecD [Rhodobacter sp. SW2]
          Length = 555

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 201/554 (36%), Positives = 304/554 (54%), Gaps = 33/554 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQ------------------------SMLDRFP 36
           +    W  ++   IC +G+  ALPN                            + L ++P
Sbjct: 2   LHTPLWKRLIIWGICVLGMFYALPNLFYTRVETHNDAAKMVEAAGGVATPEQEAALAQWP 61

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN 96
             +P   ++LGLDLRGG+HL+ EV   D     +     ++R  L++    V ++R+  +
Sbjct: 62  GFLPSGLVNLGLDLRGGAHLLAEVKVADVYKSRIDAMWPDVRDALREVRDQVGNVRRQPS 121

Query: 97  K---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
               + +S             V    + V S   +      +       + + LS+    
Sbjct: 122 VPGVLRVSVEKPEAIAEAVKAVKALARPVVSLTGIGSNDIEVT-AEGDAVVVQLSEAERV 180

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
              S  I+QS+EIIR+R+D++G  E TIQR G+ RILIQ+PG    + L+ L+GTTAK++
Sbjct: 181 ATDSRTIQQSLEIIRRRVDEVGTREPTIQRQGTDRILIQVPGIGSAAELKALIGTTAKLT 240

Query: 214 FHKVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           FH V+ + +      G R       D  G  Y+VE+   ++G  L  A  +FD  + +P 
Sbjct: 241 FHPVVSSTTDAAANPGPRNLLLPSMDEKGLFYIVEETPVVTGEELVDAQPDFDQNS-RPA 299

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V   F+  GAR F + T +NIG P A+VLD  V++APVI   IP G   I+GNF+IE + 
Sbjct: 300 VKFRFNPTGARAFGDYTANNIGSPFAIVLDDEVISAPVIQSHIPGGSGIITGNFSIEEST 359

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            LA +LRAG+LP ++  +EER +G +LG DSI  G  A +  +V +VLFM   YG +G+ 
Sbjct: 360 KLAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGKVAALVAMVAVVLFMWASYGLFGVF 419

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ +N+ L    LS++G TLTLP IAGIVL IG+AVD+N+LV ERIREE R  ++  
Sbjct: 420 ANVALAINMALIFGALSMVGGTLTLPGIAGIVLTIGMAVDANVLVFERIREELRGLKNPA 479

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++++G+ RA S I D+N T  I  VVLF  G G VRGFAIT+G+ I+ S+FTA+ + RA
Sbjct: 480 RAIEIGYERALSAIIDANFTTFITAVVLFMVGAGPVRGFAITLGIGIITSVFTAVFVTRA 539

Query: 510 MMIFIIRYKKMKSI 523
           ++      ++ K+I
Sbjct: 540 IIEIWFAMRRPKTI 553



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 92/208 (44%), Gaps = 4/208 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G+   +      V  +   +    T      +GP++ ++ I  G V  +++ +A+++
Sbjct: 348 IITGNFSIEESTKLAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGKVAALVAMVAVVL 407

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++W  +   F + A   L +++    G  ++ G    L  +A ++  IG +V+  V+V++
Sbjct: 408 FMWASYGL-FGVFANVALAINMALIFGALSMVGGTLTLPGIAGIVLTIGMAVDANVLVFE 466

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ ++      +    I+      L   +  +   FI+ + + + G   +  FAI + 
Sbjct: 467 RIREELRGLK---NPARAIEIGYERALSAIIDANFTTFITAVVLFMVGAGPVRGFAITLG 523

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830
            GI+ +  +++F+   I+   +  R   
Sbjct: 524 IGIITSVFTAVFVTRAIIEIWFAMRRPK 551


>gi|86138468|ref|ZP_01057042.1| protein-export membrane protein SecF [Roseobacter sp. MED193]
 gi|85824993|gb|EAQ45194.1| protein-export membrane protein SecF [Roseobacter sp. MED193]
          Length = 322

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 176/305 (57%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P   +  F       +GIS L  +  +      GLN+GIDF+GG  +   +   
Sbjct: 1   MRLRLVPQETSFDFFSKWKIWLGISALMMVVGLVSFGLQGLNFGIDFRGGTTVRTESTTA 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642
           +D+   R  +  +++GDIS                ++R+Q Q         V+E +++ +
Sbjct: 61  IDVGQYREAIAPMELGDISITEVFDPTFEEDQHVAMIRIQAQASGEAISGEVIEELQQAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             + P     + E VGPK+S EL++  I+ V+++  A+LIYIW+RF+W FALGA+  L+ 
Sbjct: 121 DAVAPGIKFVSVESVGPKVSGELVQTAILAVVLAIGAVLIYIWLRFEWQFALGAVVALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I+F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y       ++++
Sbjct: 181 DVVLTIGIFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKK-DLSEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINETL R+V TS+   ++++ + V GG VI  F   M +G++V   SS+F+A+ ILL+
Sbjct: 240 LSINETLSRTVMTSVTTLLALVSLYVLGGDVIRGFVFAMIWGVIVGTYSSVFVASTILLW 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|304436593|ref|ZP_07396562.1| protein-export membrane protein SecF [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370289|gb|EFM23945.1| protein-export membrane protein SecF [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 305

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 1/296 (0%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R     IS+L  I  I  +   G N+GIDF GG  + +   +PV L  VRS
Sbjct: 1   MPKFDIAGHRKIWFLISLLVIIPGIICMCVRGFNFGIDFTGGTIMDLRFEQPVTLQGVRS 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L    +   + Q    E                +    + V   +T+ V   T+   E 
Sbjct: 61  SLAKYDLDGSTIQFAGAEAGIDASENVMIRTIDLEENQRKEVMASLTQDVGPYTVLREEK 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  I  ELI   ++ ++IS   +++Y+  RF+W F + A+  LI DI   +  F+    
Sbjct: 121 VGATIGGELITNAVLALVISWALIILYVAYRFEWRFGVSAVLALIHDIIIVMAVFSFTQR 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775
           + + + +AA+LT++GYS+ND +V++DR+R+N+KL+        +L+++SI +TL RS+YT
Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDVNELVNRSIYQTLTRSLYT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 +   +  +GG     FA  +  G  V   SSIFIA+ + + + +      
Sbjct: 241 VFTVLFTTFALYWFGGETTKDFAFALLIGFAVGCYSSIFIASQLWIELRNRTEHRR 296


>gi|332974532|gb|EGK11452.1| protein-export membrane protein SecD [Kingella kingae ATCC 23330]
          Length = 618

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 164/507 (32%), Positives = 283/507 (55%), Gaps = 25/507 (4%)

Query: 29  QSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
           Q+ +   P  + K     + LGLDLRGG H  ++VD    ++  L  Y+ ++R  L+++ 
Sbjct: 102 QNQIANSPEWLEKIGARPMFLGLDLRGGVHFTMQVDMKAALDKTLDRYAGDIRRTLRQQK 161

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           I   ++R+  N + + F D+   +    ++   ++G              V      +++
Sbjct: 162 IRTGTVRKTGNSLVVPFQDAADVQKAYPELQKLMEGAQ------------VAVDGNNVTV 209

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            L +  + Q+ + A++Q++  +  R++++G +E  IQ+ G+ RI++QLPG  D ++ + +
Sbjct: 210 TLPEALLTQIRNDAVKQNINTLHNRVNELGTAEPVIQQAGADRIVVQLPGMTDTAKAKDI 269

Query: 206 LGTTAKMSFHKVLP------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           +G TA +    V                 G   L +++ N++LV  +VE++G ++N A A
Sbjct: 270 IGRTATLEVRMVSTDASLFGQAQSGNVPDGYELLSNNEQNRFLVSKQVELTGDNINSAQA 329

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSG 315
            F+ KT +P V++S D  G   F ++T  N GK +A+VL  +    V+TAP IN AI  G
Sbjct: 330 GFEDKTGRPTVNLSLDGAGTSIFADLTTANKGKIMAMVLIDQGKSEVVTAPRINDAITGG 389

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           + QI+G  +   A  +A +LRAGSL   + IVEER +G  LG+++I KG  + V G   +
Sbjct: 390 RVQITGMASPAEANDVALLLRAGSLAAPMEIVEERTIGPSLGAENITKGINSTVWGFAAV 449

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
            +FM+  Y  +G+ +  ++  N++   A+LS L ATLTLP IA + L +G+A+DSN+L+N
Sbjct: 450 AVFMMFYYRLFGVFSTVALSANLLFLFAILSALQATLTLPGIAAMALTLGMAIDSNVLIN 509

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERIREE R  +    ++  G+  A+ TI DSN+T+LIA + L  FG G VRGFAI   L 
Sbjct: 510 ERIREELRDGKKPQAAIKEGYDHAWDTIVDSNLTSLIAGIALLIFGSGPVRGFAIVHCLG 569

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKS 522
           I+ S+++++ + RA++      ++   
Sbjct: 570 IITSIYSSVVVSRALVNLWYGSRRKLK 596



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 90/245 (36%), Gaps = 4/245 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +   + + +   Q                       G +         +  +   +   
Sbjct: 358 ANKGKIMAMVLIDQGKSEVVTAPRINDAITGGRVQITGMASPAEANDVALLLRAGSLAAP 417

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  E I KGI   +    A+ +++   ++  F + +   L  ++    
Sbjct: 418 MEIVEERTIGPSLGAENITKGINSTVWGFAAVAVFMMFYYRL-FGVFSTVALSANLLFLF 476

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              +       L  +AA+   +G +++  V++ +R+R+ ++        +  I +  +  
Sbjct: 477 AILSALQATLTLPGIAAMALTLGMAIDSNVLINERIREELRDGKK---PQAAIKEGYDHA 533

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               V +++ + I+ + + ++G   +  FAI    GI+ +  SS+ ++  ++   Y  R 
Sbjct: 534 WDTIVDSNLTSLIAGIALLIFGSGPVRGFAIVHCLGIITSIYSSVVVSRALVNLWYGSRR 593

Query: 829 KNARI 833
           K   +
Sbjct: 594 KLKHL 598


>gi|320528878|ref|ZP_08029970.1| protein-export membrane protein SecF [Selenomonas artemidis F0399]
 gi|320138508|gb|EFW30398.1| protein-export membrane protein SecF [Selenomonas artemidis F0399]
          Length = 308

 Score =  228 bits (581), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 142/295 (48%), Gaps = 1/295 (0%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R     IS++  I     +   G N+GIDF GG  + +    PV L+ +R+
Sbjct: 1   MPKFDIAGHRRIFFLISLILIIPGFICMGVRGFNFGIDFTGGTIIDLHFEHPVTLADIRT 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L    + + + Q    E                +    + V   + + V   T+   E 
Sbjct: 61  SLAKYDLDNSTIQLSGTESGVESSENAMIRTVDLEENQRKEVMAALAQDVGPYTVLREEK 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  I  ELI   ++ ++IS   +++Y+  RF+W F + A+  L+ DI   L  F+L   
Sbjct: 121 VGATIGGELITNAVLALVISWALIILYVAYRFEWRFGVSAVLALVHDIIIVLAVFSLTQR 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775
           + + + +AA+LT++GYS+ND +V++DR+R+N+KL+        +L+++SI +TL RS+YT
Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDVDELVNRSIYQTLTRSLYT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                 +   +  +GG     FA  +  G  V   SSIFIA+ I + + +   + 
Sbjct: 241 VFTVLFTTAALYWFGGETTKDFAFALLVGFAVGCYSSIFIASQIWIELRNRTERR 295


>gi|300690471|ref|YP_003751466.1| SecYEG protein translocase auxillary subunit [Ralstonia
           solanacearum PSI07]
 gi|299077531|emb|CBJ50157.1| SecYEG protein translocase auxillary subunit [Ralstonia
           solanacearum PSI07]
          Length = 626

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 170/515 (33%), Positives = 272/515 (52%), Gaps = 26/515 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL   P +L                + LGLDLRGG H +L+VD +  +   L   
Sbjct: 109 IVALNLLSGSPRWLTSIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+ +GI    + +  + I + F      +     +    +        +    
Sbjct: 160 AGDIRTQLRDKGIRHNGIERSGSTIAIKFGSPDDADRARSLLADSAR--------ELAFT 211

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           +  T     ++   +     +V  +A++Q++  +  R++++G+SE  IQ+ G  RI++QL
Sbjct: 212 VDKTADGATLTGTFTDAAKKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +      PN +           G        G   L++ +V 
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPNATGIPRATDPVPLGDELFTQGRGAPVLLQKQVI 331

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +N A+A FD   H P VDI+ D  G R   +V+RDNIGK + +VL  +    +  
Sbjct: 332 FTGDRINSASAGFDQN-HSPSVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 390

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  T+E+A  LA +LRAGSL   + I+EER +G  LG+D+I KG 
Sbjct: 391 VATIQSELGSRFQITGIGTVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 450

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            +   G   I +FM++ Y  +GL +  ++ +NV L +A+LS+L ATLTLP IA I L +G
Sbjct: 451 DSAAYGFAAISVFMVLYYMLFGLFSVVALGVNVFLLIAILSMLQATLTLPGIAAIALALG 510

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NER+REE R   S   ++  GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 511 MAIDANVLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFA+   L IL SMF+A+   R+++      KK 
Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG         A+ +++ + +   F L ++  L +++   +
Sbjct: 429 MEIIEERTIGPSLGADNIKKGFDSAAYGFAAISVFMVLYY-MLFGLFSVVALGVNVFLLI 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++      S +  I       
Sbjct: 488 AILSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGASPQMAIAAGFERA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FA+    GI+ +  S++F    ++   Y  + 
Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604

Query: 829 K 829
           K
Sbjct: 605 K 605



 Score = 37.7 bits (85), Expect = 9.3,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34
          R   W  ++  M   IG L  LPNF  ++   +
Sbjct: 3  RYPLWKYLVILMALAIGFLYTLPNFFGEAPAVQ 35


>gi|260887827|ref|ZP_05899090.1| protein-export membrane protein SecF [Selenomonas sputigena ATCC
           35185]
 gi|330838606|ref|YP_004413186.1| protein-export membrane protein SecF [Selenomonas sputigena ATCC
           35185]
 gi|260862433|gb|EEX76933.1| protein-export membrane protein SecF [Selenomonas sputigena ATCC
           35185]
 gi|329746370|gb|AEB99726.1| protein-export membrane protein SecF [Selenomonas sputigena ATCC
           35185]
          Length = 305

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 1/294 (0%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                 ++       +S+   +  I  + T G N GIDF GG  + +   + V L+ VR 
Sbjct: 1   MHKFDIVKRTKIWFILSLCVILPGIFSMCTQGFNLGIDFTGGTIIELRFQKEVTLADVRG 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L    + + + Q      N              +    + V   + + +    +   E 
Sbjct: 61  VLREYGLDNSTIQFSGDAANAEAAPTVMVRSVDLEEEERKAVMASLKQQLGDYDVLREEK 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  +  ELI   +  + +S + +++Y+  RF++ F + +I  L+ DI   L  F+L   
Sbjct: 121 VGATMGAELIMNALWALALSWVMIVLYVSYRFEFRFGISSILALVHDILIVLSVFSLTQR 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775
             + + VAA+LT++GYS+ND +V++DR+R+N+KL+        +L++ SI +TL RS+YT
Sbjct: 181 PIDSSFVAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDINELVNTSIYQTLTRSIYT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                 +   +  +GG     F+  +  G      SSIFIA+PI + + ++  K
Sbjct: 241 VCTVLFTTFALYWFGGDTTKDFSFALLVGFFAGCYSSIFIASPIWVVLRNFSEK 294


>gi|71083673|ref|YP_266393.1| preprotein translocase subunit SecF [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|71062786|gb|AAZ21789.1| preprotein translocase chain secF [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 295

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 105/294 (35%), Positives = 183/294 (62%), Gaps = 5/294 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSVVRSNL 598
           I F +       IS+   + S+ LLF  GLN+G+DFKGG  + + + ++ ++++ +R + 
Sbjct: 2   INFNKFYKLFNLISLSLVVASVLLLFFKGLNFGVDFKGGTLIELRSNDKNINVTSLRQSF 61

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
             +++GD + + F  E +FL++++ +   + A   + + +   +         +  E VG
Sbjct: 62  NKMKLGDFNIKKFGNENDFLIKIEKKDTSANAIEVIKKDLTSSL---GSSFNFRRVENVG 118

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           PK+S EL++ GI+ + +S  AML YIWIRF+W F+LGAI  L  D+  TLG F+LF +E 
Sbjct: 119 PKVSSELLKSGIIAIALSLAAMLFYIWIRFEWQFSLGAILALFHDVIITLGLFSLFSLEI 178

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           NL+ VAAVLT++GYS+ND VV+YDR+R+N++ + + I   +L + SINETL R++ TS+ 
Sbjct: 179 NLSIVAAVLTIVGYSMNDTVVIYDRVRENLRKF-SDIKIYELTNISINETLSRTIITSVT 237

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             ++++ + ++GG ++  F++ M  G+V    SSI+IA PIL+ +   +    +
Sbjct: 238 TLLALVSIYLFGGEILKGFSLAMIMGVVFGTYSSIYIANPILVKLRVSQKTILK 291


>gi|160945112|ref|ZP_02092338.1| hypothetical protein FAEPRAM212_02631 [Faecalibacterium prausnitzii
           M21/2]
 gi|158442843|gb|EDP19848.1| hypothetical protein FAEPRAM212_02631 [Faecalibacterium prausnitzii
           M21/2]
 gi|295105642|emb|CBL03186.1| protein-export membrane protein SecF [Faecalibacterium prausnitzii
           SL3/3]
          Length = 777

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 153/763 (20%), Positives = 289/763 (37%), Gaps = 59/763 (7%)

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           V      V +      K        +  +++    ++        ++ +  +I  R+  +
Sbjct: 28  VAAKYGDVTTTYIKGAKDIRFGVDIKGGVNVTFVPSDGYDATDEQLDAARLVIENRLVAL 87

Query: 175 GISESTIQRLGSHRILIQLPGEQ------DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
            +++  +    +   LI     Q      DP    Q +GTTA ++F +            
Sbjct: 88  NVTDYELYVDNNSDSLILEFPWQSGETDFDPESAIQEIGTTAYLTFRE-------GASKD 140

Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
           G   L  S       +     +G       A                   A       + 
Sbjct: 141 GELILDGSMVESASAQYGAVSNGGSSEYYVALKFTTEGA------KAFGDATTKLAADKG 194

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           +I   L             I        +  S  FT +    +A  + +G+LP  L++  
Sbjct: 195 SISIWLDDENVSTATVNTAITDGQAIITSSASNPFTQDAVVKMARQINSGALPFALSVDS 254

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
              V   LG +S+     A +    LIV+FM VLY   G +A  ++   V  TLA +S  
Sbjct: 255 YSTVSPSLGENSLGAMVLAGLIAFALIVVFMTVLYRLPGFLACIALAGQVAATLAFVSGY 314

Query: 409 G-----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
                  TLTLP IAGI+L IG+ VD+N++  ERI+EE +  +S+  +L  GF+R  + I
Sbjct: 315 FPVFESFTLTLPGIAGIILAIGMGVDANVITAERIKEELKNGKSLDGALKSGFARGLTPI 374

Query: 464 FDSNITALIATVVLFFFGGGAV----------------------RGFAITMGLSILISMF 501
            D N+T +I  +VL    G +                         F  T+   +L++  
Sbjct: 375 IDGNVTIVIVAIVLMGAFGPSDGLFAKALHFVFFAFGPSTAGTIYAFGYTLLTGVLLNFV 434

Query: 502 TAISIVRAMMIFIIRYKKMKSID-INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
             +   R M+      K +++              +   + F+  R   +  S       
Sbjct: 435 FGVFATRVMIRGAAAIKALRNPWLYGAAKPGQEKAEKKPVDFVSLRKKFLTFSACLMAVI 494

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVL----ANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
           +      G++   +F GG  + +      ++        + LE+  +   + +N      
Sbjct: 495 LLCAAVFGVHLDTEFTGGAMITLSYEGGFDQAAVQKTAAAALENTGLTLQTGENVATGDQ 554

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            L            +     +               +   V   +  + ++K +V V+ +
Sbjct: 555 TLKISMPGTETVTTEQVENLLDSLNENYPDNQFAQLSLSNVSAAMGTKFLQKSLVAVVFA 614

Query: 677 AIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + +L+YI +RFK        + A+  L+ D+    G F L     +   +AA+LT++GY
Sbjct: 615 LVLILLYIALRFKNIGGLTGGMMAVLALVNDLMVVFGTFVLLRTALDGNFIAAMLTILGY 674

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---- 788
           S+ND VVVYDR+R+N  L     SF +L+++S+N++  R++ T++   +++  M +    
Sbjct: 675 SINDTVVVYDRIRENRALMGKKGSFEELVNQSVNQSARRTLITTITTVMALGVMCIVAKL 734

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +G   I +FA P+  G++    +S+ ++    +   +   K  
Sbjct: 735 YGLDSIFTFAFPLMMGMISGVYTSLCVSTSAWVLWSERSKKKN 777


>gi|187930027|ref|YP_001900514.1| preprotein translocase subunit SecD [Ralstonia pickettii 12J]
 gi|187726917|gb|ACD28082.1| protein-export membrane protein SecD [Ralstonia pickettii 12J]
          Length = 629

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 167/515 (32%), Positives = 270/515 (52%), Gaps = 24/515 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL   P +L  +             + LGLDLRGG H +L+VD +  V   L   
Sbjct: 109 IVALNLLPGSPRWLSGAP-------FFAKPMFLGLDLRGGVHFLLQVDMNGAVTKKLDSL 161

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+ +GI    + +  N IT+ F+     +     +    +        +    
Sbjct: 162 AGDIRTQLRDKGIRHSGIDRNGNTITIKFSTPDDADRARTLLADSTR--------ELAYT 213

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           +  +     ++   +   + +V  +A++Q++  +  R++++G++E  IQ+ G  RI++QL
Sbjct: 214 VDKSADGATLTGTFTAAAMKEVQDNAVKQNIVTLHNRVNELGVAEPVIQQQGPDRIVVQL 273

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +      PN            L D           L++ +V 
Sbjct: 274 PGVQDTAKAKDIIGRTATLEARLADPNAPLAPRPGDPVPLGDELFTQGRSAPVLLQKQVI 333

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +  A+A FD   +   VDI+ D  G R   +V+RDNIGK + +VL  +    +  
Sbjct: 334 FTGDRITSASAGFDQNHNS-SVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 392

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  + E A  LA +LRAGSL   + I+EER +G  LG+D+I KG 
Sbjct: 393 VATIQSELGSRFQITGMGSTEAASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 452

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            + + G + I +FM++ Y  +G  +  ++ +NV L +ALLS+L ATLTLP IA I L +G
Sbjct: 453 DSALYGFLAISVFMVLYYMLFGAFSVAALGVNVFLLIALLSMLQATLTLPGIAAIALALG 512

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NER+REE R   S   ++  GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 513 MAIDANVLINERVREELRSGASAQMAIAAGFDRAWATILDSNVTTLIAGLALIAFGSGPV 572

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFAI   L I  SMF+A+   R ++      KK 
Sbjct: 573 RGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKKK 607



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG    +   +A+ +++ + +   F   ++  L +++   +
Sbjct: 431 MEIIEERTIGPSLGADNIKKGFDSALYGFLAISVFMVLYY-MLFGAFSVAALGVNVFLLI 489

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++   +  S +  I    +  
Sbjct: 490 ALLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---SGASAQMAIAAGFDRA 546

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FAI    GI  +  S++F    ++   Y  + 
Sbjct: 547 WATILDSNVTTLIAGLALIAFGSGPVRGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKK 606

Query: 829 K 829
           K
Sbjct: 607 K 607



 Score = 37.7 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34
          R   W  ++  +   IG L  LPNF  ++   +
Sbjct: 3  RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQ 35


>gi|294010574|ref|YP_003544034.1| preprotein translocase SecD subunit [Sphingobium japonicum UT26S]
 gi|292673904|dbj|BAI95422.1| preprotein translocase SecD subunit [Sphingobium japonicum UT26S]
          Length = 533

 Score =  228 bits (580), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 192/533 (36%), Positives = 302/533 (56%), Gaps = 15/533 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             W V+   +   IG+  A+P+FLP S++ + P  M + R++LGLDL GGSHL+LE    
Sbjct: 5   PRWAVVAILLPLLIGIACAVPSFLPDSVVGQLPKFM-QTRVNLGLDLSGGSHLLLEASTQ 63

Query: 64  DFVNGFLQMYSDELRSFLK--KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           D     +    +++R+ L+     I +  +     K++    +    +   +++      
Sbjct: 64  DVAKQRIANMEEQVRTELRRGDTKIAIGDISSRDGKLSFMVRNPSQVDAAVERIR---PL 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                    +   +       I I  ++  ID  +  A+E + E+IR+RID++G  E TI
Sbjct: 121 TQGAGLTGQRDFNVEVVNSSTIVITPTKAGIDNAVKGAMEVATEVIRKRIDEMGTREPTI 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233
           Q+ G +RI++Q+PG QDP  L+ LLG TAK+ F  V  N +      G   +        
Sbjct: 181 QQQGDNRIVVQVPGLQDPKALKDLLGQTAKLEFKLVDVNANPAEVAQGRAPVGSEVLPYP 240

Query: 234 -RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
              +      V  +V +SG  L  A   +D   ++P+V+I F+  G R+F +VT  N+ +
Sbjct: 241 TNPAGPPVIAVYRQVMVSGEDLTDAQQGYDQTGNQPIVNIRFNGAGGRKFGQVTSQNVNR 300

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
           P A++LDG+VL+AP IN+ I  G AQISG+FT+E+A  LA  LR+G LP+ L +VEER V
Sbjct: 301 PFAIILDGQVLSAPNINEPILGGSAQISGSFTVESANQLAIALRSGKLPVALTVVEERTV 360

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG+DSI  G  A V  +  +  FM V YG++G+ A+ ++ +NV++ L ++ +LGATL
Sbjct: 361 GPQLGADSIRAGLMASVIAVAAVAAFMFVSYGRFGMYANLAVAINVLVILGVMGILGATL 420

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAG VL IG AVD+N+L+ ERIREE R+ + V  +++ G+  A  TIF++N+T  I
Sbjct: 421 TLPGIAGFVLTIGTAVDANVLIYERIREERRRGRGVVQAIEHGYKEASRTIFEANVTHAI 480

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           A  ++   G G V+GFAI + + I  S+FTA++  R ++   +R K+   I I
Sbjct: 481 AGGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTRLLVSRWVRAKRPTEIHI 533



 Score = 95.5 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 70/172 (40%), Gaps = 4/172 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  + IR G++  +I+  A+  ++++ +   F + A   + +++   LG   + G  
Sbjct: 361 GPQLGADSIRAGLMASVIAVAAVAAFMFVSYG-RFGMYANLAVAINVLVILGVMGILGAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++Y+   +  +           I+    E        ++
Sbjct: 420 LTLPGIAGFVLTIGTAVDANVLIYE---RIREERRRGRGVVQAIEHGYKEASRTIFEANV 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              I+   M   G   +  FAI +  GI  +  +++     ++      +  
Sbjct: 477 THAIAGGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTRLLVSRWVRAKRP 528


>gi|253583473|ref|ZP_04860671.1| export membrane protein SecD [Fusobacterium varium ATCC 27725]
 gi|251834045|gb|EES62608.1| export membrane protein SecD [Fusobacterium varium ATCC 27725]
          Length = 314

 Score =  228 bits (580), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 85/293 (29%), Positives = 149/293 (50%), Gaps = 2/293 (0%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I+ ++     VG+S++  + S+   F  GLNYGIDF GG    +   +P+ L+ + +NL+
Sbjct: 3   IEIIKNSKKFVGLSLVIVVLSLGAFFVKGLNYGIDFSGGNLFQLRFEKPITLNDINNNLD 62

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +            +                       V   + +I     I   E VG 
Sbjct: 63  EVSKDINQVNPNSRKVQISEDNTVIIRTPELTETEKTEVLNNLKKIGTF-DINKEEKVGA 121

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I  EL    I  + I A  +++YI  RF++ FA+ A+  L  D+   +G  +L G E +
Sbjct: 122 SIGEELKTSAIYALGIGAFLIILYITFRFEFTFAIAAVAALFHDLIIAVGVISLLGYEVD 181

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
              +AA+LT++GYS+ND +VV+DR+R+N+K    + SF D ++KSIN+ + RS+ TS+  
Sbjct: 182 TPFIAAILTILGYSINDTIVVFDRIRENLKRKNKN-SFEDCLNKSINQVMIRSINTSVTT 240

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +++ + V+GG  + +F + +  GI+    SS+FIA P++ F+   +    +
Sbjct: 241 LFAIIAILVFGGDSLKTFIVTLLIGILAGTYSSVFIATPLVYFLDKSKKGPNK 293


>gi|238926105|ref|ZP_04657865.1| protein translocase subunit SecF [Selenomonas flueggei ATCC 43531]
 gi|238885995|gb|EEQ49633.1| protein translocase subunit SecF [Selenomonas flueggei ATCC 43531]
          Length = 305

 Score =  228 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 84/296 (28%), Positives = 141/296 (47%), Gaps = 1/296 (0%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R     IS+L  I  I  +   G N+GIDF GG  + +   +PV L  VRS
Sbjct: 1   MPKFDIAGHRKIWFLISLLVIIPGIICMCVRGFNFGIDFTGGTIMDLRFEQPVTLQGVRS 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L    +   + Q    E                +    + V   +T+ V   T+   E 
Sbjct: 61  SLAKYDLDGSTIQFAGAEAGIDASENVMIRTIDLEENQRKEVMASLTQDVGPYTVLREEK 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  I  ELI   ++ ++IS   +++Y+  RF+W F + A+  LI DI   +  F+    
Sbjct: 121 VGATIGGELITNAVLALVISWALIILYVAYRFEWRFGVSAVLALIHDIIIVMAVFSFTQR 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775
           + + + +AA+LT++GYS+ND +V++DR+R+N+KL+        +L+++SI +TL RS+YT
Sbjct: 181 QIDSSFIAALLTIVGYSINDTIVIFDRIRENLKLHFRRGGDVNELVNRSIYQTLTRSLYT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 +   +  +GG     FA  +  G  V   SSIFIA+ + + + +      
Sbjct: 241 VFTVLFTTFALYWFGGETTKDFAFALLIGFAVGCYSSIFIASQLWIELRNRTEHRR 296


>gi|153208373|ref|ZP_01946711.1| protein-export membrane protein SecF [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212218577|ref|YP_002305364.1| preprotein translocase subunit SecF [Coxiella burnetii CbuK_Q154]
 gi|120576030|gb|EAX32654.1| protein-export membrane protein SecF [Coxiella burnetii 'MSU Goat
           Q177']
 gi|212012839|gb|ACJ20219.1| protein translocase subunit [Coxiella burnetii CbuK_Q154]
          Length = 304

 Score =  228 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR R W    S +  + SI  L  +GLN G+DF GG Q+ V   +PVD
Sbjct: 1   MEFFKTNTKIPFMRQRKWAGIFSAIIFLASIITLAVNGLNLGLDFTGGTQVEVNFTKPVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +R NL          + +D     +    ++             +K+K+   +P   
Sbjct: 61  TNQIRKNLAEAGFPQAVVRVYDVRHISVRVAPHKELTQE-------ELKEKLMSAMPGGH 113

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I + + +GP++ ++L+  GI+ VI++ IA +IYI +RF+  FAL A   LI D    LG 
Sbjct: 114 IGSLDYIGPQVGKQLMTNGILAVIVALIATMIYIALRFEMRFALSAAIALIHDPVLILGI 173

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+ F IEFNL  +AAVLT+IGYS+ND +VVYDR+R+N +      +  +++D SIN+TL 
Sbjct: 174 FSFFHIEFNLIVLAAVLTVIGYSLNDTIVVYDRIRENFRKVRRG-TPTEIVDLSINQTLS 232

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS    I VL + ++GGS +  FA+ +  GIV+   SSI++A  + +     R 
Sbjct: 233 RTIMTSGLTLIVVLALFIFGGSTLRPFALALIIGIVIGTYSSIYVAGSLAVTFGLRRR 290


>gi|255022134|ref|ZP_05294137.1| Protein-export membrane protein secF [Acidithiobacillus caldus ATCC
           51756]
 gi|254968398|gb|EET25957.1| Protein-export membrane protein secF [Acidithiobacillus caldus ATCC
           51756]
          Length = 316

 Score =  228 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 113/298 (37%), Positives = 175/298 (58%), Gaps = 1/298 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+     + FM  RF  +GIS L  + SI      GL+Y IDF GG  + +   R  D
Sbjct: 1   MELLKTRTHVDFMSRRFLFLGISALLIVASIAAYLVRGLDYSIDFTGGTLVELGFTRTPD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ VR  L+     D   Q F G+++ L+RL+ QPG+S A    +  V +K     P   
Sbjct: 61  LAAVRGTLDKAGYHDAVVQTFGGDRDLLIRLRTQPGESSAVASRILQVFQKDQRQFPGVE 120

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++ + L  +GI+ +II  + +LIY+  RF+W FA+G +  ++ D    +GF
Sbjct: 121 LRRTEYVGPEVGKALRNQGIMALIIVTLGILIYVGFRFEWRFAVGGVAAMLHDPILVVGF 180

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FAL   EF+LT +AA+L ++GYS+ND VVV+DRMR++++   +  S  ++ + +INETL 
Sbjct: 181 FALTQQEFSLTVIAALLVVMGYSLNDTVVVFDRMREDLRASRSG-SVAEIFNIAINETLS 239

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS   F+  + + ++GG VI  FA  +  G+VV   SSIFIA+PI L++   R 
Sbjct: 240 RTLITSFITFMVAMSLFLFGGPVIHGFATALVIGVVVGTYSSIFIASPIALWLGLKRE 297


>gi|262371076|ref|ZP_06064398.1| preprotein translocase subunit SecD [Acinetobacter johnsonii SH046]
 gi|262313962|gb|EEY95007.1| preprotein translocase subunit SecD [Acinetobacter johnsonii SH046]
          Length = 633

 Score =  228 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 158/535 (29%), Positives = 271/535 (50%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  +   ++  + +LR   +   I
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAIAQRMETSATDLRRQFRDNKI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+    N IT+ FA++  +    D +                +  + T T   + + 
Sbjct: 163 KFNSLALNNNTITVQFANNDDRTAAQDYLRSNGNEF--------NQQAVATATGSTLRLT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ S+A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V   N                        +     G + L+     ++G 
Sbjct: 275 GRTANLEFRLVSDQNDQVIDPYTGKSNGQPLPPGTELFAYQSLDSGRELLLNRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   T    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDTGGAEVNITLDTAGGKLMSDATRNAVGKRMAVLFIENKQRISYITDPA 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QA+   + +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGAQTEVRTPYAESVVINAATIQAVLGSQFRITGLDSPQEASELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I KG  +   G +L+ ++M+V +  +GL+A+F++  N+ + L ++S 
Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTVMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE +   S   ++  G+ RAY+TIFDSN
Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMKWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   K+   
Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQLIYGKKRNLK 629



 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 94/250 (37%), Gaps = 4/250 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   D +            +    N    +  L       G    Q      +  +  
Sbjct: 386 RISYITDPATGAQTEVRTPYAESVVINAATIQAVLGSQFRITGLDSPQEASELALMLRAG 445

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +          +VGP + +E I KG++   I  + + I++ + F+  F L A   L+ +
Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVFN 504

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L   +  G    L  +A ++  IG +V+  V++ +R+R+ MK      S +  I  
Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMKW---GASPKQAIVA 561

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +        +++  F+    +   G   I  FA+ +  GI+ +  ++I +   I+  I
Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQLI 621

Query: 824 YDWRAKNARI 833
           Y  +    ++
Sbjct: 622 YGKKRNLKKL 631



 Score = 42.4 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 51/374 (13%), Positives = 88/374 (23%), Gaps = 35/374 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   W  +L  ++  I  L ALP+  P                             +++
Sbjct: 1   MRYPAWKYLLILVVLTISTLYALPSLYPDEPA-------------------------VQI 35

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                     Q    +    LK E I         N   L    S  +    + +   L 
Sbjct: 36  SGAKAGTQIDQSIVQKAEQILKSESISSHDNSFSNNAALLRLDSSEAQLKAKEALRRGLG 95

Query: 121 G-------VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME---IIRQR 170
                   +        +K                   ++  +  AI Q ME      +R
Sbjct: 96  DDYVVALNLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAIAQRMETSATDLRR 155

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
             +    +     L ++ I +Q     D +  +  L +       + +   +        
Sbjct: 156 QFRDNKIKFNSLALNNNTITVQFANNDDRTAAQDYLRSNGNEFNQQAVATATGSTLRLTY 215

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
             +R  +   Y V   +      +N           +    I  +  G +   E  R   
Sbjct: 216 TDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVLG 275

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                           VI+        Q     T   A       R   L     +  ER
Sbjct: 276 RTANLEFRLVSDQNDQVIDPYTGKSNGQPLPPGTELFAYQSLDSGRELLLNRNRILTGER 335

Query: 351 NVGADLGSDSIYKG 364
              A  G      G
Sbjct: 336 VQNASSGFSQDTGG 349


>gi|71908893|ref|YP_286480.1| preprotein translocase subunit SecD [Dechloromonas aromatica RCB]
 gi|71848514|gb|AAZ48010.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Dechloromonas aromatica RCB]
          Length = 625

 Score =  228 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 169/529 (31%), Positives = 273/529 (51%), Gaps = 27/529 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 105 VVALNLLAASPQWLTSLHA---------LPMYLGLDLRGGVHFLLQVDMKGALTKRLDST 155

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           S +LR+ ++ + +    + +   +I + F D+  +      ++     +      D  + 
Sbjct: 156 SADLRTVMRDKNLRHGGVNREGERIIIKFRDAETQNKARIAISDSQPDLLLTDAGDAAEP 215

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                    +   L      ++   A++Q++  +  RI+++G++E  IQ+ G+ RI++QL
Sbjct: 216 --------RLIATLKPQAQQKIGEFALKQNITTLHNRINELGVAEPVIQQQGADRIVVQL 267

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKV 247
           PG QD ++ + +LG TA +    V  +             FG     +  G   LV+ +V
Sbjct: 268 PGVQDTAKAKDILGRTATLEIRMVDDSTGALDAALAGNPPFGTEVYNERGGQPLLVKKQV 327

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVL 303
            ++G  L  A   FD +T +  V ++ D  GAR F ++TR+N+GK +         G V+
Sbjct: 328 VLTGDRLTDAQPGFDNQTQEAAVHLTLDAAGARIFKDITRENVGKRMAILLIEKGKGEVV 387

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           TAPVI   I  G+ QISG  T   A   A +LRAGSL   + I+EER +G  LG+++I K
Sbjct: 388 TAPVIRTEIGGGRVQISGRMTTTEANDTALLLRAGSLAAPMEIIEERTIGPSLGAENIQK 447

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  + + G   I +FMI+ Y  +G+V+  ++  N++  +A+LSLL ATLTLP IA I L 
Sbjct: 448 GFHSTMWGFAAIAVFMIIYYQMFGVVSVLALASNLLFLVAILSLLQATLTLPGIAAIALT 507

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+A+D+N+L+NER+REE R       ++  G+ RA+ TI DSNIT LIA + L  FG G
Sbjct: 508 LGMAIDANVLINERVREELRAGMPPQAAISEGYERAFGTILDSNITTLIAGLALLIFGSG 567

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            VRGFA+   L IL S+F+++ + R ++  I   +K  +          
Sbjct: 568 PVRGFAVVHCLGILTSIFSSVVVSRGLVNLIYGRQKKLTKVAIGQLWKP 616



 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 90/212 (42%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  E I+KG    +    A+ 
Sbjct: 401 VQISGRMTTTEANDTALLLRAGSLAAPMEIIEERTIGPSLGAENIQKGFHSTMWGFAAIA 460

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ I ++  F + ++  L  ++   +   +L      L  +AA+   +G +++  V++ 
Sbjct: 461 VFMIIYYQM-FGVVSVLALASNLLFLVAILSLLQATLTLPGIAAIALTLGMAIDANVLIN 519

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I +      G  + +++   I+ L + ++G   +  FA+  
Sbjct: 520 ERVREELRA---GMPPQAAISEGYERAFGTILDSNITTLIAGLALLIFGSGPVRGFAVVH 576

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  SS+ ++  ++  IY  + K  ++
Sbjct: 577 CLGILTSIFSSVVVSRGLVNLIYGRQKKLTKV 608



 Score = 45.8 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 40/161 (24%), Gaps = 31/161 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I  ++   +G +  LPNF  +S                           ++V 
Sbjct: 3   RYPLWKYITIAIALVMGFVYTLPNFFGESPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                    +     +   LK  GI    ++   N +   F D+  +    D +      
Sbjct: 38  SAKATIKVDEKAKARVEDSLKAAGITHDGIQLDFNGVKTRFKDTDTQLKAKDALEKAFN- 96

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
                        +V       S     +     +   ++ 
Sbjct: 97  -----PDAADPQYVVALNLLAASPQWLTSLHALPMYLGLDL 132


>gi|87200089|ref|YP_497346.1| preprotein translocase subunit SecD [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135770|gb|ABD26512.1| protein-export membrane protein SecD [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 535

 Score =  228 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 186/536 (34%), Positives = 302/536 (56%), Gaps = 17/536 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W VI   ++  + +  A+P+      L  +PS++P+ +++LGLDL GGSH++LE 
Sbjct: 2   LEFPRWKVIWLWLLTLVCVAAAIPSLTSTMGL-AWPSSLPEPKVNLGLDLAGGSHILLEA 60

Query: 61  DEDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           D        ++   + +R+ L    + I +  +      +T   AD    + + + +   
Sbjct: 61  DPSQVRQQRIEGMEESVRTKLKQDDKNIRISDISNRDGALTFVVADPSQVDAVREAI--- 117

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L   N       +   +         +  +   IDQ ++ A++ ++E++R+RID +G  E
Sbjct: 118 LPLTNGAGLTGQRDWDINVVDGNRFVLKPTDAGIDQAVTQAMDTAVEVVRKRIDALGTKE 177

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG--------- 229
            TI R G  RI++Q+PG QDP  L+ LLG TAK+ F  V  +        G         
Sbjct: 178 PTIIRSGPTRIVVQVPGLQDPQALKNLLGQTAKLEFKLVDTSALPSDVAQGIAPPGSEIV 237

Query: 230 --VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
             V            V+    I G  L  A    + +T++PVV+I+F+  G  +F ++T 
Sbjct: 238 PYVSPAEGGGVPSIAVKRLGGIRGDQLTNAQQTNNQQTNEPVVNITFNTEGGAKFAKLTT 297

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            N+GK  A++LDG+VL+APVIN+ I  G A ISG FT E+A  LA  LR+G+LP+ L +V
Sbjct: 298 QNVGKQFAIILDGKVLSAPVINEPILGGSAVISGRFTTESANQLAISLRSGALPVDLKVV 357

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG DLG+DSI KG  A+  G + + +F++  YG++G+ A+ ++ +NV++ L ++ +
Sbjct: 358 EERTVGPDLGADSIRKGVIAMGVGTLALAVFILATYGRFGVYANLAVIINVLMILGIMGI 417

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +G TLTLP IAG VL IG AVD+N+L+NERIREE  + + V  ++++G+  A   IFD+N
Sbjct: 418 IGTTLTLPGIAGFVLTIGAAVDANVLINERIREERHRGRKVVQAVELGYKEASRAIFDAN 477

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           IT +IA V++F FG G V+GFA+ + + I  S+FTA+++ R  +   +R  +   I
Sbjct: 478 ITNVIAAVLMFAFGSGPVKGFAVVLMIGIATSVFTAVTLTRMWVAGWLRRARPTEI 533



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 75/175 (42%), Gaps = 8/175 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IRKG++ + +  +A+ ++I   +   F + A   +I+++   LG   + G  
Sbjct: 363 GPDLGADSIRKGVIAMGVGTLALAVFILATYG-RFGVYANLAVIINVLMILGIMGIIGTT 421

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++ +R+R+              ++    E        ++
Sbjct: 422 LTLPGIAGFVLTIGAAVDANVLINERIREERHRGRK---VVQAVELGYKEASRAIFDANI 478

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              I+ + M  +G   +  FA+ +  GI     +S+F A  +         + AR
Sbjct: 479 TNVIAAVLMFAFGSGPVKGFAVVLMIGIA----TSVFTAVTLTRMWVAGWLRRAR 529


>gi|88812650|ref|ZP_01127897.1| SecD export membrane protein [Nitrococcus mobilis Nb-231]
 gi|88790066|gb|EAR21186.1| SecD export membrane protein [Nitrococcus mobilis Nb-231]
          Length = 619

 Score =  228 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 162/537 (30%), Positives = 276/537 (51%), Gaps = 36/537 (6%)

Query: 17  IGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +GL +     +  ++    P+ +       + LGLDLRGG H ++EVD    +   ++ Y
Sbjct: 91  VGLALGRQYTVALNLAPTTPAWLRAINAQPMYLGLDLRGGVHFLMEVDTQAAIKQAMERY 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            +  R+ L++E I    +    + + ++F  +  +E     +             +   +
Sbjct: 151 VNAFRTQLREERIRYSEVALNGHSVQVAFKQAPVREAAFQALRNEY--------PELTFS 202

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                 + +++ +L Q  + ++ + A++Q++  +R R++++G++E  IQR G   I+++L
Sbjct: 203 ADEHDGKFQLTALLPQGEVQEIENLAVQQNITTLRNRVNELGVAEPVIQRQGGDHIVVEL 262

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------DGNQYLVEDKV 247
           PG QD +R + +LG TA + FH V  ++             D       DG   L++   
Sbjct: 263 PGVQDTARAKDILGATATLEFHLVNMSHFPYEGEPNQPVAPDDKVYPERDGGYVLLKRDT 322

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            ++G  +  A A FD +T  P V I  +  G +     T +++   +AVV          
Sbjct: 323 ILTGEFITDAQAGFDQQTGGPEVTIRLNGAGGKMMNRFTSEHVKDYMAVVFIENQTQTRK 382

Query: 308 I-------------------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           +                    Q     + +I+G      +  LA +LRAGSL   ++IVE
Sbjct: 383 VNGELKRIRSRSEEVINVAQIQEPLGSRFRITGLDNPRESHNLALLLRAGSLAAPISIVE 442

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A+  G  L+VLFM + Y  +GL AD ++F N+IL +A+LS+L
Sbjct: 443 ERTIGPSLGQHNIDQGFLAVSIGFALVVLFMALYYRIFGLFADAALFANLILIIAVLSML 502

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLTLP IAGIVL +G+AVD+N+L+ ERIREE     +   +++ G+++A STI D+N+
Sbjct: 503 QATLTLPGIAGIVLTVGMAVDANVLIFERIREELHAGATPQTAINAGYAKALSTITDANV 562

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LIA + LF FG G V+GFA+T+ + I+ SMFTAI   RA+   +   ++   + I
Sbjct: 563 TTLIAALALFAFGTGPVKGFAVTLCIGIVTSMFTAIMGTRALANLVYGGRRGVRLAI 619



 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 96/262 (36%), Gaps = 4/262 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
               +  +        V          V   L+ ++       N    +  L       G
Sbjct: 356 MMNRFTSEHVKDYMAVVFIENQTQTRKVNGELKRIRSRSEEVINVAQIQEPLGSRFRITG 415

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               +      +  +   +    +I     +GP + +  I +G + V I    +++++ +
Sbjct: 416 LDNPRESHNLALLLRAGSLAAPISIVEERTIGPSLGQHNIDQGFLAVSIGFALVVLFMAL 475

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F L A   L  ++   +   ++      L  +A ++  +G +V+  V++++R+R+
Sbjct: 476 YYRI-FGLFADAALFANLILIIAVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFERIRE 534

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +       + +  I+    + L      ++   I+ L +  +G   +  FA+ +  GIV
Sbjct: 535 ELHA---GATPQTAINAGYAKALSTITDANVTTLIAALALFAFGTGPVKGFAVTLCIGIV 591

Query: 807 VAASSSIFIAAPILLFIYDWRA 828
            +  ++I     +   +Y  R 
Sbjct: 592 TSMFTAIMGTRALANLVYGGRR 613



 Score = 44.3 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 48/150 (32%), Gaps = 27/150 (18%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++ ++   +GLL ALPN   +                    L+  ++   + D
Sbjct: 4   RYPLWKYLIIAVALVVGLLYALPNLYGEDPA-----------------LQITTN---QGD 43

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
                         ++   L  EGI         N + + F D+  +   A++V L L +
Sbjct: 44  APSA------PVRQQILDLLADEGIAAKGSGVRDNHLLVRFHDTEAQLKAANQVGLALGR 97

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
                LN+ P     +     +   +    
Sbjct: 98  QYTVALNLAPTTPAWLRAINAQPMYLGLDL 127


>gi|163736764|ref|ZP_02144183.1| SecF protein [Phaeobacter gallaeciensis BS107]
 gi|163742662|ref|ZP_02150047.1| protein-export membrane protein SecF [Phaeobacter gallaeciensis
           2.10]
 gi|161383917|gb|EDQ08301.1| protein-export membrane protein SecF [Phaeobacter gallaeciensis
           2.10]
 gi|161390634|gb|EDQ14984.1| SecF protein [Phaeobacter gallaeciensis BS107]
          Length = 322

 Score =  228 bits (579), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 175/305 (57%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  LIP+  +  F +     +GIS L  +         GLN+GIDF+GG  +   +   
Sbjct: 1   MRLKLIPENTSFDFFKRWKLWLGISALMIVVGFASFALQGLNFGIDFRGGTTIRTESTTE 60

Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +D+   R+ LE L++GD            + +   +VR+Q Q         V+  V   +
Sbjct: 61  IDVGTYRAALEPLELGDITISEVFDPTFAEDQHVAMVRIQAQADGESISGEVIADVNAAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             + P     + E VGPK+S EL++  ++ V ++  A+LIYIW+RF+W FALGA+  L+ 
Sbjct: 121 DAVAPGIKFVSVESVGPKVSGELVQTAVLAVALAIGAVLIYIWLRFEWQFALGAVAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I+F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y       ++++
Sbjct: 181 DVVLTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKK-PLAEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINETL R+V TS+   ++++ + V GG VI  F   M +G+++   SSIF+A+ ILL+
Sbjct: 240 ISINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIIGTYSSIFVASTILLW 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|299139861|ref|ZP_07033033.1| protein-export membrane protein SecF [Acidobacterium sp. MP5ACTX8]
 gi|298598215|gb|EFI54381.1| protein-export membrane protein SecF [Acidobacterium sp. MP5ACTX8]
          Length = 320

 Score =  228 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILF-SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +     I ++  +++ +G S++F     + + F H +  G+DF+GG Q+ V  ++  +
Sbjct: 1   MELFRSSNIDWLGKKWYFLGFSLIFSVAGILSMAFWHHIPLGVDFRGGTQITVHFDQAPN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              +R  +++  I D + Q   G       N ++ L        A  +    ++  +   
Sbjct: 61  EDHIRRAIDAAGIKDPTIQRISGANGAAVNNVIISLPESTASDSAHDQGRSTIENALNAN 120

Query: 646 --VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                 ++Q  +IVGP   ++L  +  +  I S I ML+Y+W RF+  + + A+  +  D
Sbjct: 121 YHDSGFSVQQVDIVGPTAGKQLQHQAWLATIYSLIGMLVYLWFRFELIYGVAAVVAVFHD 180

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T+GFF+L   E +LT +AA+LTLIGYS+ND +VV+DR+R+N+   +   S  D++++
Sbjct: 181 TLITVGFFSLTNQEISLTVIAAILTLIGYSMNDTIVVFDRIRENLAS-SRRESLSDVVNR 239

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           SIN+TL R+V  S   F++VL + ++GG V+  F+  +  GI++   SSI +AAP+L+  
Sbjct: 240 SINQTLSRTVIASGLTFLTVLSLYLFGGEVLHGFSFALVVGILIGTYSSIAVAAPMLVAY 299

Query: 824 YDWRAKNAR 832
            DWR ++ +
Sbjct: 300 QDWRTRSGK 308


>gi|114320375|ref|YP_742058.1| preprotein translocase subunit SecF [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226769|gb|ABI56568.1| protein translocase subunit secF [Alkalilimnicola ehrlichii MLHE-1]
          Length = 314

 Score =  228 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 96/294 (32%), Positives = 162/294 (55%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I F+  R  GV +S L  + SI  L   GLN GIDF GG  + V      D
Sbjct: 1   MELFKREPRIDFLGKRRLGVVLSALLLLASIGSLAMQGLNLGIDFTGGTVVEVGYPEAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +   LE    GD   Q F  +++ ++R+  +  D  A   + E V   +    P + 
Sbjct: 61  LGRIDGVLEDAGYGDAVTQFFGTQRDVMIRVPPRDVDESAV--ISEEVLAALQADSPDAE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ REL  +G++ ++ +   +L+Y+  RF++ FA+G++  L+ D+   LGF
Sbjct: 119 LRRVEFVGPQVGRELTEQGLLAMLYALGGILVYVAFRFEYRFAIGSVAALLHDVILVLGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F++  ++F+LT +AAVL +IGYS+ND +VV+DR+R+N          R++++ SIN+TL 
Sbjct: 179 FSITRMQFDLTVLAAVLAIIGYSLNDTIVVFDRIRENFLKLRK-AGPREVMNISINQTLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS    + V  + + GG +I  FA  +  G+++   SSI++A+   L + 
Sbjct: 238 RTLITSFTTLLVVGSLMLVGGELIRGFATALLVGVLIGTYSSIYVASASALALG 291


>gi|198283822|ref|YP_002220143.1| protein-export membrane protein SecF [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|198248343|gb|ACH83936.1| protein-export membrane protein SecF [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 316

 Score =  228 bits (579), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 111/298 (37%), Positives = 172/298 (57%), Gaps = 1/298 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FM  R+  +G+S L  I S+ +    GLNY IDF GG  + +  ++  D
Sbjct: 1   MELFKVRTHVDFMSRRWIFLGVSALLIIASVAVFLVRGLNYSIDFTGGTLVELAFSKTPD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  L      D   Q F G+++ L+RL+  PG+S A    +  V +K     P   
Sbjct: 61  LGAVRGTLTQAGFHDAVVQTFGGDRDLLIRLRTVPGESSAVGNTILQVFRKDQVEYPDVQ 120

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++ +EL  KGI+ +II  + +LIY+  RF+W FA+G +  ++ D    +GF
Sbjct: 121 LRRTEYVGPEVGKELRNKGIMALIIVTLGILIYVGFRFEWRFAVGGVLAMLHDPILVVGF 180

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA+   EF+LT +AA+L ++GYS+ND VVV+DRMR++++   +      + + +INETL 
Sbjct: 181 FAISHEEFSLTVIAALLVIMGYSLNDTVVVFDRMREDLRASRSG-DVAQIFNVAINETLS 239

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R+V TS   F+  L + ++GG VI  FA  +  G+VV   SSIF+A+PI L++   R 
Sbjct: 240 RTVITSFITFMVALSLFLFGGPVIHGFATALVIGVVVGTYSSIFVASPIALWLGLKRE 297


>gi|261212156|ref|ZP_05926442.1| protein-export membrane protein SecF [Vibrio sp. RC341]
 gi|260838764|gb|EEX65415.1| protein-export membrane protein SecF [Vibrio sp. RC341]
          Length = 315

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR   +   +S+     S+  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKADKMIDFMRWSKFAFALSLAMIAASMFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ LE+   GD + QNF   ++ +VRL+ +  D   +T   +++           
Sbjct: 61  NLDQIRTALEAKGFGDATVQNFGSARDVMVRLRPRE-DMAGETLGNQILAAIKEGTGGNV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S + +L+Y+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         ++++ SI +TL
Sbjct: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GG++I  FA+ +  GI V   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFAKGGALIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297


>gi|163746863|ref|ZP_02154220.1| protein-export membrane protein SecD, putative [Oceanibulbus
           indolifex HEL-45]
 gi|161379977|gb|EDQ04389.1| protein-export membrane protein SecD, putative [Oceanibulbus
           indolifex HEL-45]
          Length = 549

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 196/544 (36%), Positives = 287/544 (52%), Gaps = 29/544 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43
           W  I   + C  GL +ALPN                         ++    +P  MP   
Sbjct: 7   WKRIAIVLTCLAGLWLALPNAFYAPVEKHNDAVAAIDVQGSTPELEAQRALWPEWMPSGL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA 103
           ++LGLDLRGG+HL+ EV   D     ++    E+R  L+              ++ +   
Sbjct: 67  VNLGLDLRGGAHLLAEVQLADVYASRMEAQWPEVRDALRSLTPVRREEAPAG-ELRVRLN 125

Query: 104 DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
           D+              + V +          +  T    I+I LS           ++QS
Sbjct: 126 DASKMAEALQITRDLARPVTTVTGAGGSDINVSGTDG-TINITLSDAEKQATDERTMQQS 184

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
           +EI+R+RID++G  E TIQR G+ RILIQ+PG    + L+ ++GTTA+++F+ V+   S 
Sbjct: 185 LEIVRRRIDEVGTREPTIQRQGADRILIQVPGIGSAAELKAIIGTTAQLTFNPVVNRGSS 244

Query: 224 KGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
           +    G+        D +G  Y VE    ++G  L  A  +FD     P V   FD  GA
Sbjct: 245 ENDNPGIGNAILPAADEEGVFYTVETAPVVTGEQLVDAQPSFDQNG-APAVSFRFDTSGA 303

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
           R+F + T DNIG P A+VLD  V++AP I   IP G   I+G F++E +  LA +LRAG+
Sbjct: 304 RKFGDYTADNIGSPFAIVLDNEVISAPTIQSHIPGGSGIITGRFSVEESTNLAVLLRAGA 363

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           LP  L+ VEER +G +LG DSI  G  A +     ++ FM   YG +G  A+ ++ +NV 
Sbjct: 364 LPAGLSFVEERTIGPELGQDSIDAGKIATMVAFAAVLFFMWASYGLFGFFANIALIINVG 423

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           L   LLSL+GATLTLP IAGIVL +G+AVD+N+L+ ERIREE R  +    ++ +G+ RA
Sbjct: 424 LIFGLLSLIGATLTLPGIAGIVLTVGMAVDANVLIFERIREEQRNAKGAARAISLGYERA 483

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            S I D+NIT  I  V+LF  G G VRGFA+T+GL I+ S+FTA  + R +++     ++
Sbjct: 484 LSAILDANITTFIVAVILFALGSGPVRGFAVTLGLGIMTSVFTAFFVTRLLVVIWFERRR 543

Query: 520 MKSI 523
            K+I
Sbjct: 544 PKTI 547



 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 81/175 (46%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +  +++  A+L ++W  +   F   A   LI+++    G  +L G
Sbjct: 375 TIGPELGQDSIDAGKIATMVAFAAVLFFMWASYGL-FGFFANIALIINVGLIFGLLSLIG 433

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+  +    +      I       L   +  
Sbjct: 434 ATLTLPGIAGIVLTVGMAVDANVLIFERIREEQR---NAKGAARAISLGYERALSAILDA 490

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI  + +   G   +  FA+ +  GI+ +  ++ F+   +++  ++ R   
Sbjct: 491 NITTFIVAVILFALGSGPVRGFAVTLGLGIMTSVFTAFFVTRLLVVIWFERRRPK 545


>gi|78222074|ref|YP_383821.1| preprotein translocase subunit SecD [Geobacter metallireducens
           GS-15]
 gi|78193329|gb|ABB31096.1| SecD export membrane protein [Geobacter metallireducens GS-15]
          Length = 533

 Score =  227 bits (578), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 191/535 (35%), Positives = 288/535 (53%), Gaps = 23/535 (4%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           W   L  +   +  +   P F+       +   +PK+RI+LGLDL+GG+HLV+EV+    
Sbjct: 7   WRFGLILLFIFLSGIYLTPTFVSPLP-SWWKGLLPKDRINLGLDLQGGTHLVMEVEIQKA 65

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           V G L + + +L   L  + I    + R   ++I L+F D    + +   V      +  
Sbjct: 66  VEGALDLIASDLEDSLSAKTIRFKKIGRIASDRIQLTFYDRGTADTVQKMVKEKYPTLEL 125

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
               D             + + + +    +    A+ Q++E IR RIDQ G+SE  I R 
Sbjct: 126 VPPYD-------EGGFVSMQLRMGEKEAQERKDRAVAQALETIRNRIDQFGVSEPVIARE 178

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------- 236
           G   I++QLPG +DP R  +L+G TA++ F  V    +      G               
Sbjct: 179 GLTHIVVQLPGIKDPKRAIELIGRTARLEFKLVDETVNPATATPGTIPEDSELLMEKKTD 238

Query: 237 ------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                      +V+ K  I+G  L  A    D + ++P V I F+  GAR F +VT  N+
Sbjct: 239 PTTGAVTEIPLVVKKKAMITGDLLTNAQVRIDSQFNQPYVAIEFNSTGARLFDQVTAANV 298

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           GK  A+VLD  + +APVI + I  G AQISG+F+ + A  LA +LRAGSLP  + +++  
Sbjct: 299 GKRFAIVLDNNIYSAPVIRERISGGSAQISGSFSEKEAADLAIVLRAGSLPAPVKVIQNE 358

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG  LG DSI KG  A + G+ L+V+FM + Y   GLVA+F + LNV+  +  L+ LGA
Sbjct: 359 TVGPSLGQDSITKGLMAGLVGVALVVVFMAIYYKLAGLVANFGMVLNVLYLMGALAALGA 418

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IA IVL IG++VDSN+L+ ERIREE R  +    +LD G+ +A+ TI DS++T 
Sbjct: 419 TLTLPGIAAIVLLIGMSVDSNVLIFERIREEMRLGKPPKAALDAGYDKAFLTIMDSHVTT 478

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LI   VLF FG G V+GFA+++ L I+I++FTA+   +++  F +   ++K + I
Sbjct: 479 LITAAVLFQFGTGPVKGFAVSLSLGIIINLFTALVGTKSIFDFALSRLRIKRLSI 533



 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 88/181 (48%), Gaps = 5/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E VGP + ++ I KG++  ++    +++++ I +K    L A   ++L++   +G  A
Sbjct: 356 QNETVGPSLGQDSITKGLMAGLVGVALVVVFMAIYYKL-AGLVANFGMVLNVLYLMGALA 414

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G    L  +AA++ LIG SV+  V++++R+R+ M+L       +  +D   ++     
Sbjct: 415 ALGATLTLPGIAAIVLLIGMSVDSNVLIFERIREEMRL---GKPPKAALDAGYDKAFLTI 471

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + + +   I+   +  +G   +  FA+ ++ GI++   +++     I       R +  R
Sbjct: 472 MDSHVTTLITAAVLFQFGTGPVKGFAVSLSLGIIINLFTALVGTKSIF-DFALSRLRIKR 530

Query: 833 I 833
           +
Sbjct: 531 L 531


>gi|46580229|ref|YP_011037.1| preprotein translocase subunit SecD [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602386|ref|YP_966786.1| preprotein translocase subunit SecD [Desulfovibrio vulgaris DP4]
 gi|46449646|gb|AAS96296.1| protein-export membrane protein SecD [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562615|gb|ABM28359.1| protein-export membrane protein SecD [Desulfovibrio vulgaris DP4]
 gi|311233785|gb|ADP86639.1| protein-export membrane protein SecD [Desulfovibrio vulgaris RCH1]
          Length = 532

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 182/535 (34%), Positives = 282/535 (52%), Gaps = 22/535 (4%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W + L  ++    +   LP+  P          +P NRISLGLDL GG HL L VD D 
Sbjct: 6   RWRLALSLVVFLAAVAYVLPSI-PAVKSSPMGRFLPDNRISLGLDLMGGIHLTLGVDVDK 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQI-QNKITLSFADSRFKENIADKVTLFLQGVN 123
            V   L     ++RS  +++ I +   R +  +++    A +  ++ + + +      + 
Sbjct: 65  AVENSLSQMGQDIRSSAREKDIFILRPRILPGDRVEFVLAKAAQRDQLGEMLAKQFPQL- 123

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                     + +   +      L +     +   A++Q+++ IR RIDQ G++E  I++
Sbjct: 124 -----AVGAPVEIDGGQLRYVATLKKEQRTHIEDMALDQAVKTIRNRIDQFGVAEPDIRK 178

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237
              HRI +QLPG  DP+R  Q++G TA + F  V  +   +    G+             
Sbjct: 179 QQDHRIQVQLPGLADPARAIQIIGKTAHLEFRIVRDDVDPEKLAKGLVPPGVDVLPMMRR 238

Query: 238 -------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                       ++ ++ ++G ++  A   FD    +  V ++F+  GA  F  VT +N+
Sbjct: 239 GGDGSAGEVPVALDKEILLTGENVADARPGFDQFN-QAYVMLTFNSRGAAIFERVTGENV 297

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
            K LA+VLDG+V +AP I + I  G+A I+G+FT E A  LA +LRAGSLP  +N++EER
Sbjct: 298 RKRLAIVLDGKVYSAPSIQEKIAGGRASITGHFTTEEAQDLAIVLRAGSLPAPVNVLEER 357

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG  LG +SI  G  A   G   +V+F I+ YG  G +A   +   ++L LA ++  GA
Sbjct: 358 TVGPSLGQESIDSGILAGQVGGAAVVVFTILYYGASGAIAVGMLCFTILLILAGMAGFGA 417

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP +AGI L IG+ VD+N+L+ ERIREE R+  +   ++  GF RA  +I DSN+T 
Sbjct: 418 TLTLPGLAGIALTIGMGVDANVLIYERIREELRRGLTPLAAIHAGFDRAMLSITDSNLTT 477

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +IA  +L+ FG G VRGFA+T+ L IL SMFTAI + RA+    +R    K + I
Sbjct: 478 VIAAAILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRAVFDLWMRLSPSKRLSI 532



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 97/245 (39%), Gaps = 5/245 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V    VR  L  +  G +       EK    R       +  + + L +V +  +   
Sbjct: 290 ERVTGENVRKRLAIVLDGKVYSAPSIQEKIAGGRASITGHFTTEEAQDLAIVLRAGSLPA 349

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P++ ++   + GP + +E I  GI+   +   A++++  + +       A+  L   I  
Sbjct: 350 PVNVLEERTV-GPSLGQESIDSGILAGQVGGAAVVVFTILYYG-ASGAIAVGMLCFTILL 407

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L   A FG    L  +A +   IG  V+  V++Y+R+R+ ++     ++    I    +
Sbjct: 408 ILAGMAGFGATLTLPGLAGIALTIGMGVDANVLIYERIREELR---RGLTPLAAIHAGFD 464

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             +     +++   I+   +  +G   +  FA+ +  GI+ +  ++IF++  +       
Sbjct: 465 RAMLSITDSNLTTVIAAAILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRAVFDLWMRL 524

Query: 827 RAKNA 831
                
Sbjct: 525 SPSKR 529


>gi|218779039|ref|YP_002430357.1| protein-export membrane protein SecD [Desulfatibacillum
           alkenivorans AK-01]
 gi|218760423|gb|ACL02889.1| protein-export membrane protein SecD [Desulfatibacillum
           alkenivorans AK-01]
          Length = 533

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 196/542 (36%), Positives = 307/542 (56%), Gaps = 26/542 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM--PKNRISLGLDLRGGSHLVL 58
           M+N  + + L +++  + LL   P    Q  +D+       P   I+LGLDL+GG HLVL
Sbjct: 1   MKNFTFRLTLVAIVLALALLFLWPTV-NQWFVDKDKDHTAWPHKVINLGLDLQGGMHLVL 59

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTL 117
           EV   + V   +  YSD+L+  L++E I          + +T++   S   +        
Sbjct: 60  EVQTQEAVVSTMDRYSDDLKEGLRREHIRSKDQDLINGDTLTVTIIGSEALDKFKKWAGE 119

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  +    +   +  +            + +++   ++  + +Q++E IR RID++G++
Sbjct: 120 EMSELVPDYDPQGENTVCT--------FTMPESDQKAIMDSSRDQALETIRNRIDKLGVA 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E  I++ G  RIL+QLPG  D  R + +L +TA++ F  +     +       R    ++
Sbjct: 172 EPDIRKQGEKRILVQLPGVTDTQRAKDILVSTAQLQFRLLDDRQDQVRDYINRRPPPGTE 231

Query: 238 G--------------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
                            YLV+ KV ++G +L  A AN   +  +PVV I F++ G  +F 
Sbjct: 232 ILYSKHVDAQGRVSSRPYLVKKKVLLTGEYLEKAYANMQGQFSEPVVSIEFNKKGGFKFA 291

Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343
            +T +N+GKPLA+VLDGRV +APVI + I  G+A I+G   ++ A  LA +L+AG+LP+ 
Sbjct: 292 RITGENVGKPLAIVLDGRVFSAPVIQEKISGGQAVITGIGNMQEASDLAIILQAGALPVS 351

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
           L I+EER VGA LG DSI   T A++ G VL+V+FM V Y   GL+A+ ++ LNV+L LA
Sbjct: 352 LKILEERTVGASLGKDSIKTSTNAMLIGFVLVVVFMAVYYMGAGLIANIALILNVVLILA 411

Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
            L+LL ATLTLP IAGI+L IG+AVD+N+L+ ERIREE R  ++   ++D GFS+A  TI
Sbjct: 412 SLALLDATLTLPGIAGIILTIGMAVDANVLIFERIREEIRTGKAPAFAVDSGFSKATITI 471

Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            D+N+T  +A  VL  FG G V+GFA+T+   I  SMFTAI + R +  + + Y+ ++ +
Sbjct: 472 LDANVTTFVAAFVLLQFGTGPVKGFAVTLCFGIAASMFTAIVVSRLIFDYFLYYRNVRKL 531

Query: 524 DI 525
            I
Sbjct: 532 SI 533



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 82/174 (47%), Gaps = 5/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ I+     ++I  + +++++ + +     L A   LIL++   L   AL    
Sbjct: 361 GASLGKDSIKTSTNAMLIGFVLVVVFMAVYY-MGAGLIANIALILNVVLILASLALLDAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++++R+R+ ++   T  +    +D   ++     +  ++
Sbjct: 420 LTLPGIAGIILTIGMAVDANVLIFERIREEIR---TGKAPAFAVDSGFSKATITILDANV 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
             F++   +  +G   +  FA+ + FGI  +  ++I ++  I   F+Y    + 
Sbjct: 477 TTFVAAFVLLQFGTGPVKGFAVTLCFGIAASMFTAIVVSRLIFDYFLYYRNVRK 530


>gi|269468358|gb|EEZ80029.1| preprotein translocase subunit SecF [uncultured SUP05 cluster
           bacterium]
          Length = 306

 Score =  227 bits (578), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 100/291 (34%), Positives = 165/291 (56%), Gaps = 7/291 (2%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I F+  R + +  S++    SI  L T GL +GIDF GG  + V   + VDLS VR  
Sbjct: 7   PTIDFVGKRTYAIVFSVVLIAVSIFSLATQGLKFGIDFTGGTLIEVGYKKSVDLSKVRDT 66

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L   +    + Q F      L+RL+ Q   S   +  +  +      +     I+  E V
Sbjct: 67  LSDAKFKGANVQYFGSTNEILIRLEPQAISSAKLSTKIIRL------LGDDVDIRRVEFV 120

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+  EL   G + ++ + I +LIY+  RF++ F+LG+I+ L+ D+  TLG F+L  IE
Sbjct: 121 GPKVGEELTNDGGLAMLYALIGILIYVAFRFEYRFSLGSISALMHDVIITLGIFSLLQIE 180

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AA+L +IGYS+ND +VV+DR+R+N  L T  +    +I+ ++N+TL R++ TS+
Sbjct: 181 FDLTVLAAILAVIGYSLNDTIVVFDRIRENF-LSTRHVDPEKIINGALNQTLSRTIMTSV 239

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              I +L +   GG +I SFA+ +  G+++   SSI++A+ ++L +   + 
Sbjct: 240 TTLIVLLALFFLGGEIIHSFALALLIGVIIGTYSSIYVASSMILTMGITKE 290


>gi|255262055|ref|ZP_05341397.1| protein-export membrane protein SecF [Thalassiobium sp. R2A62]
 gi|255104390|gb|EET47064.1| protein-export membrane protein SecF [Thalassiobium sp. R2A62]
          Length = 324

 Score =  227 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 108/307 (35%), Positives = 178/307 (57%), Gaps = 9/307 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P+     F       +GIS L  + +       GLN+GIDFKGG  +   +   
Sbjct: 1   MRLRLVPETTNWDFFSRSKLWLGISALMMVLAFASFMIQGLNFGIDFKGGTTIRTQSTEA 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD+ V R  +E+L +GDI+                ++R+Q Q G+      ++  V   +
Sbjct: 61  VDVGVYRDAIEALDLGDITITQVFDPTFGPDKHVTMLRIQAQEGEESVGNALVTNVGTAL 120

Query: 643 TEIVPLST--IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + P       + E VGPK+S ELI+  ++ V+++  A+LIYIW+RF+W FALGA+  L
Sbjct: 121 LAVDPGLQLPFASVESVGPKVSGELIKTAVIAVLLAIAAVLIYIWLRFEWQFALGAVAAL 180

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           + D+  T+G F+   I+F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y      +++
Sbjct: 181 VHDVILTIGVFSAVQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKK-DLKEV 239

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ SINETL R+V TS+   ++++ + V GG VI  F   M +G++V   SS+F+A+ +L
Sbjct: 240 LNLSINETLSRTVMTSVTTLLALVSLYVLGGDVIRGFVFAMIWGVIVGTYSSVFVASAML 299

Query: 821 LFIYDWR 827
           L++   R
Sbjct: 300 LWLGVKR 306


>gi|56697179|ref|YP_167543.1| preprotein translocase subunit SecF [Ruegeria pomeroyi DSS-3]
 gi|56678916|gb|AAV95582.1| protein-export membrane protein SecF [Ruegeria pomeroyi DSS-3]
          Length = 322

 Score =  227 bits (577), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 175/305 (57%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  LI D  +  F       +GIS L  +         GLN+GIDF+GG  +   +   
Sbjct: 1   MRLKLIADDTSFDFFSRWRIWLGISALLVLVGFASFLIQGLNFGIDFRGGTTVRTESTEA 60

Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD+ + R  L+ L +GD              E   ++R+Q Q      ++  +  V++ +
Sbjct: 61  VDVGLYRGALDPLGLGDITITEVFDPTFGPDENVAMIRIQAQDEAEAVKSETIAKVQEAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             + P     + E VGPK+S ELI+  I+ V ++ +A+L+YIW+RF+W FALGA+  L+ 
Sbjct: 121 RSVAPDIKFVSVESVGPKVSGELIQTAILAVTLAILAVLVYIWLRFEWQFALGAVAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y      +++++
Sbjct: 181 DVVLTIGIFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKY-KQKDLKEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINET+ R++ TS+   ++++ + V GG VI  F   M +GI+V   SSIF+A+ ILL+
Sbjct: 240 LSINETMSRTLMTSITTLLALVSLYVLGGDVIRGFVFAMIWGIIVGTYSSIFVASTILLW 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|153802821|ref|ZP_01957407.1| protein-export membrane protein SecF [Vibrio cholerae MZO-3]
 gi|124121646|gb|EAY40389.1| protein-export membrane protein SecF [Vibrio cholerae MZO-3]
          Length = 315

 Score =  227 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR   +   +S++    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKADKMIDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ LE+   GD + QNF   ++ +VRL+ +  D   +    +++           
Sbjct: 61  NLEQIRNALEAKGFGDATVQNFGSARDVMVRLRPRD-DMAGEALGNQILAAIKEGTGGNV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S + +L+Y+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         ++++ SI +TL
Sbjct: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GG++I  FA+ +  GI V   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297


>gi|114328111|ref|YP_745268.1| protein translocase subunit secD [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316285|gb|ABI62345.1| protein translocase subunit secD [Granulibacter bethesdensis
           CGDNIH1]
          Length = 326

 Score =  227 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 135/306 (44%), Positives = 196/306 (64%), Gaps = 2/306 (0%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +       ++PD   I+FM+ RF G+  S + S+ SI L F  GLN GIDF+GGI +   
Sbjct: 1   MFIRPMLRMVPDGTRIRFMKGRFAGLATSAVLSLISIVLFFHPGLNEGIDFRGGIVIEAR 60

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              P D   +R+ L +  +     Q F  E + L+RL  QP +  A  +    V++ + +
Sbjct: 61  TQGPADFDKIRATLSAAHLEAAGVQRFGAEDDVLIRLDSQP-NEAATQQAANTVRESLAK 119

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
            +P + +   ++VG  +SREL R G++ + +S + +L YIW+RF+W FA+GA+ TL+LD+
Sbjct: 120 ALPGTKVMRVDVVGASVSRELFRDGMLALGVSLLMILGYIWVRFEWEFAVGAVVTLVLDV 179

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           TK +GF AL  IEFN   +AA+LT+IGYS NDKVVVYDR+R+N++ Y T +  R+LID S
Sbjct: 180 TKAVGFLALTRIEFNFVIIAAILTIIGYSTNDKVVVYDRVRENLRKYRT-MPLRELIDLS 238

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           INETL R++ TSM  F++ LP+A++GG  +  FA  M FGIVV  SSSIFIAAPILL + 
Sbjct: 239 INETLNRTLGTSMTVFLASLPLALFGGESLSGFAWTMLFGIVVGTSSSIFIAAPILLLLG 298

Query: 825 DWRAKN 830
           + R + 
Sbjct: 299 EHRLRR 304


>gi|300114773|ref|YP_003761348.1| protein-export membrane protein SecF [Nitrosococcus watsonii C-113]
 gi|299540710|gb|ADJ29027.1| protein-export membrane protein SecF [Nitrosococcus watsonii C-113]
          Length = 312

 Score =  227 bits (577), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 101/294 (34%), Positives = 168/294 (57%), Gaps = 2/294 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+     I FM  R      S+   + SI  L   GLN+GIDF GG  L V   +PVD
Sbjct: 1   MKLLKKDFRIDFMGKRRLAFAFSLALLLISISSLIFQGLNFGIDFTGGTLLEVGYEQPVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           LS VR +LE  + G    Q+F   ++ L+RL     +  +     +++          +T
Sbjct: 61  LSDVRRDLEEAEFGSAIVQHFGTTRDVLIRLA-PEAERNSAKFSNKVLAALQESSDNPAT 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGPK+   L+ +G + V+ + I +LIY+ +RF++  A+G++  L+ D+   LGF
Sbjct: 120 MRRVEFVGPKVGEHLVEQGGLAVLYALIGILIYVALRFEYRLAVGSVIALVHDVIIVLGF 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+L  +EF+LT +AA+L +IGYS+ND +VV DR+R+N +      + + +I+ SIN+TL 
Sbjct: 180 FSLLRLEFDLTVLAAILAVIGYSLNDTIVVSDRIRENFRKIRKG-TAKQIINTSINQTLS 238

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+   + +  + ++GG  I SF+  +  GI+V   SSI++A+P+ L + 
Sbjct: 239 RTIMTSLTTLLVLFALFLFGGETIHSFSTALIAGIIVGTYSSIYVASPMALALG 292


>gi|260433305|ref|ZP_05787276.1| protein-export membrane protein SecF [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417133|gb|EEX10392.1| protein-export membrane protein SecF [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 322

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 175/305 (57%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P+  +  F       +GIS L  + +       GLN+GIDF+GG  +   + + 
Sbjct: 1   MRLKLVPENTSFDFFSRWKLWLGISGLMMVVAFTSFLLQGLNFGIDFRGGTTIRTQSAQG 60

Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +D+ + R  +  L +GD              E   ++R+Q Q          +  V+  +
Sbjct: 61  IDVGLYRDAITPLGLGDVSITEVFDPTFGPDENVAMIRIQAQDDAEAVSAATITAVEDAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +VP     + E VGPK+S ELI+  ++ V+++  A+L+YIW+RF+W FALGA+  L+ 
Sbjct: 121 RAVVPDIQFVSVESVGPKVSGELIQTAVIAVVLAIGAVLVYIWLRFEWQFALGAVAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y      +++++
Sbjct: 181 DVLLTIGIFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKK-DLKEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINETL R+V TS+   ++++ + V GG VI  F   M +G++V   SS+F+A+ ILL+
Sbjct: 240 LSINETLSRTVMTSVTTLLALVSLYVLGGDVIRGFVFAMIWGVIVGTYSSVFVASTILLW 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|299065733|emb|CBJ36909.1| SecYEG protein translocase auxillary subunit [Ralstonia
           solanacearum CMR15]
          Length = 627

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 168/515 (32%), Positives = 273/515 (53%), Gaps = 26/515 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL   P +L                + LGLDLRGG H +L+VD +  +   L   
Sbjct: 109 IVALNLLSGSPRWLTSIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+ +G+    + +    I++ F +    +     +    +        +    
Sbjct: 160 AGDIRTQLRDKGVRHSGIERSGTTISIKFTNPDEADRARGLLADSAR--------ELAFT 211

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           +  T     ++   +   + +V  +A++Q++  +  R++++G+SE  IQ+ G  RI++QL
Sbjct: 212 VDKTADGATLTGTFTAAAMKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +      PN +           G        G   L++ +V 
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPNATGIPRATDPVPLGDELFTQGRGAPVLLQKQVI 331

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +N A+A FD   H P VDI+ D  G R   +V+RDNIGK + +VL  +    +  
Sbjct: 332 FTGDRINSASAGFDQN-HNPSVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 390

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  ++E+A  LA +LRAGSL   + I+EER +G  LG+D+I KG 
Sbjct: 391 VATIQSELGSRFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 450

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            +   G   I +FM++ Y  +G  +  ++ +NV L +ALLS+L ATLTLP IA I L +G
Sbjct: 451 NSAAYGFAAISVFMVLYYMLFGAFSVVALGVNVFLLIALLSMLQATLTLPGIAAIALALG 510

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NER+REE R   S   ++  GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 511 MAIDANVLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFA+   L IL SMF+A+   R+++      KK 
Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605



 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 78/185 (42%), Gaps = 4/185 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG         A+ +++ + +   F   ++  L +++   +
Sbjct: 429 MEIIEERTIGPSLGADNIKKGFNSAAYGFAAISVFMVLYY-MLFGAFSVVALGVNVFLLI 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++      S +  I       
Sbjct: 488 ALLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGASPQMAIAAGFERA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FA+    GI+ +  S++F    ++   Y  + 
Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604

Query: 829 KNARI 833
           K   +
Sbjct: 605 KLQSL 609



 Score = 38.1 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +  S     ++ L               
Sbjct: 3   RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQVSSGKATVKVDL--------------- 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                   ++       + LK +G+   +     + + + FAD+  +    D +   L  
Sbjct: 48  ---ATQKQVEDLLAA--ANLKPDGVFFDTNGTSGS-VRVRFADTDTQLKAKDALARGLNT 101


>gi|239994270|ref|ZP_04714794.1| protein-export membrane protein SecF [Alteromonas macleodii ATCC
           27126]
          Length = 313

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 91/290 (31%), Positives = 161/290 (55%), Gaps = 3/290 (1%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            + FMR R   + +S +  + S   L  + LN+G+DF GG  + V      +L  +R+ L
Sbjct: 9   TVNFMRLRIPAMVLSTVLILGSFVSLGVNSLNWGLDFTGGTLIEVGYEDAANLEGIRAQL 68

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                 D   QNF   ++ L+R+  + G       + E V   +        ++  E VG
Sbjct: 69  NEANFEDAIVQNFGSSQDVLIRIAPRDGVKAVT--IGEQVLAALRAAGTEVDMRRIEFVG 126

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P +  EL  +G + ++++ + +L+Y+ +RF+W FALG+++ L  D+  TLG F++  IEF
Sbjct: 127 PNVGEELTEQGGLAMLVALLCILVYVAMRFEWRFALGSVSALAHDVILTLGLFSVLQIEF 186

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           +LT +AAVL +IGYS+ND +VV DR+R+N +         ++I+ S+ +TL R++ TS+ 
Sbjct: 187 DLTVLAAVLAVIGYSLNDTIVVCDRIRENFRKIRKGEPV-EIINISLTQTLNRTIITSLT 245

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + ++ +   GG++I  FA  + FG+VV   SS++IA+ + L +   + 
Sbjct: 246 TVLVLVALFYKGGALIHGFATALLFGVVVGTYSSVYIASSVALALGISKE 295


>gi|241664132|ref|YP_002982492.1| preprotein translocase subunit SecD [Ralstonia pickettii 12D]
 gi|240866159|gb|ACS63820.1| protein-export membrane protein SecD [Ralstonia pickettii 12D]
          Length = 629

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 166/515 (32%), Positives = 269/515 (52%), Gaps = 24/515 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL   P +L  +             + LGLDLRGG H +L+VD +  V   L   
Sbjct: 109 IVALNLLPGSPRWLSGAP-------FFAKPMFLGLDLRGGVHFLLQVDMNGAVTKKLDSL 161

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+ +GI    + +  N IT+ F+     +     +    +        +    
Sbjct: 162 AGDIRTQLRDKGIRHSGIDRNGNTITIKFSTPDDADRARTLLADSTR--------ELAYT 213

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           +  +     ++   +   + +V  +A++Q++  +  R++++G++E  IQ+ G  RI++QL
Sbjct: 214 VDKSADSATLTGTFTAAAMKEVQDNAVKQNIVTLHNRVNELGVAEPVIQQQGPDRIVVQL 273

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +      PN             G            L++ +V 
Sbjct: 274 PGVQDTAKAKDIIGRTATLEARLADPNAPLVPRAGDPVPLGDELFTQGRSAPVLLQKQVI 333

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +  A+A FD   +   VDI+ D  G R   +V+RDNIGK + +VL  +    +  
Sbjct: 334 FTGDRITSASAGFDQNHNS-SVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 392

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  + E A  LA +LRAGSL   + I+EER +G  LG+D+I KG 
Sbjct: 393 VATIQSELGSRFQITGMGSTEAASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 452

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            + + G + I +FM++ Y  +G  +  ++ +NV L +ALLS+L ATLTLP IA I L +G
Sbjct: 453 DSALYGFLAISVFMVLYYMLFGAFSVAALGVNVFLLIALLSMLQATLTLPGIAAIALALG 512

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NER+REE R   S   ++  GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 513 MAIDANVLINERVREELRGGASAQMAIAAGFDRAWATILDSNVTTLIAGLALIAFGSGPV 572

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFAI   L I  SMF+A+   R ++      KK 
Sbjct: 573 RGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKKK 607



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 79/181 (43%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG    +   +A+ +++ + +   F   ++  L +++   +
Sbjct: 431 MEIIEERTIGPSLGADNIKKGFDSALYGFLAISVFMVLYY-MLFGAFSVAALGVNVFLLI 489

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++      S +  I    +  
Sbjct: 490 ALLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELRG---GASAQMAIAAGFDRA 546

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FAI    GI  +  S++F    ++   Y  + 
Sbjct: 547 WATILDSNVTTLIAGLALIAFGSGPVRGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKK 606

Query: 829 K 829
           K
Sbjct: 607 K 607



 Score = 37.7 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34
          R   W  I+  +   IG L  LPNF  ++   +
Sbjct: 3  RYPLWKYIVILVALAIGFLYTLPNFFGEAPAVQ 35


>gi|77919488|ref|YP_357303.1| preprotein translocase subunit SecD [Pelobacter carbinolicus DSM
           2380]
 gi|77545571|gb|ABA89133.1| protein-export membrane protein SecD [Pelobacter carbinolicus DSM
           2380]
          Length = 533

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 195/543 (35%), Positives = 298/543 (54%), Gaps = 31/543 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN--RISLGLDLRGGSHLVLE 59
           ++      +      + LL  +P   P S     P  + K+   + LGLDL+GG HLVL 
Sbjct: 3   KSIKLRGGVVLFCLALSLLALMPTLFPNSS----PDWLKKSFDPLHLGLDLQGGMHLVLG 58

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVF-SMRQIQNKITLSFADSRFKENIADKVTLF 118
           VD +  V   +    D++ + LK++ I      R   +++ +   D    +    +V  F
Sbjct: 59  VDVEKAVESRIDGIVDQVETELKEKDIIFKRVSRVGNDRLVVVVYD----DEAGKQVDAF 114

Query: 119 LQG--VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           +          +  +                S + +  +  +A++Q++E +R RIDQ G+
Sbjct: 115 MADGGYRDLEPLTLETQGGYIEK----YFRFSSSAVASIQDNAVKQALETLRNRIDQFGV 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           SE+ +QR GS RIL+QLPG +DP R   LLG TA + F  V  N   +    GV      
Sbjct: 171 SETVLQRQGSDRILVQLPGIKDPRRAVDLLGKTALLEFKMVAENIDLQAAAKGVLPPGTQ 230

Query: 237 --------------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
                              +V DK  ++G  ++ A    DP+ ++P V I F+ +GA+RF
Sbjct: 231 LLYERQVDRRSGAVTQTPLVVYDKTVLTGDLVSDAQVRIDPRFNEPYVSIDFNAVGAKRF 290

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
            ++T  N+GK +A+VLD  V +AP I + I  G AQISG+F  + A  LA +LRAGSLP 
Sbjct: 291 DQITASNVGKRMAIVLDDTVYSAPFIRERISGGSAQISGSFDEQEATDLAIVLRAGSLPA 350

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
            + I+E R VG  LG DSI++G  +++ G V +VL M + Y   GLVA+ ++ LN++  +
Sbjct: 351 PVTILENRTVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNLAGLVANLALVLNLVFIM 410

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
           A+LSL  A+LTLP I GIVL +G+AVD+N+L+ ERIREE R  +S   +L+ G+S+A+ T
Sbjct: 411 AMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRLGKSARNALEAGYSKAFLT 470

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           I D+NIT LIA +VLF FG G V+GFA+T+ + I  S+FTAI + R +  F +   ++K 
Sbjct: 471 IMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFFLERYQVKR 530

Query: 523 IDI 525
           + I
Sbjct: 531 LSI 533



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 99/243 (40%), Gaps = 6/243 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             ++    +V +     L     S        +          D    T +  +++    
Sbjct: 289 RFDQITASNVGKRMAIVLDDTVYSAPFIRERISGGSAQISGSFDEQEATDLAIVLRAGSL 348

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                        VGP +  + I +GI  VII  +A+++ + I +     L A   L+L+
Sbjct: 349 PAPVTILENR--TVGPSLGLDSIHRGIWSVIIGCVAVVLAMGIYYNL-AGLVANLALVLN 405

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   +   +L      L  +  ++  +G +V+  V++Y+R+R+ ++L     S R+ ++ 
Sbjct: 406 LVFIMAMLSLCKASLTLPGIGGIVLTLGMAVDANVLIYERIREELRL---GKSARNALEA 462

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             ++     +  ++   I+ L +  +G   +  FA+ ++ GI  +  ++IF++  I  F 
Sbjct: 463 GYSKAFLTIMDANITTLIAALVLFQFGTGPVKGFAVTLSIGIAASLFTAIFVSRVIFDFF 522

Query: 824 YDW 826
            + 
Sbjct: 523 LER 525


>gi|242279108|ref|YP_002991237.1| preprotein translocase subunit SecD [Desulfovibrio salexigens DSM
           2638]
 gi|242122002|gb|ACS79698.1| protein-export membrane protein SecD [Desulfovibrio salexigens DSM
           2638]
          Length = 533

 Score =  226 bits (576), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 189/528 (35%), Positives = 286/528 (54%), Gaps = 22/528 (4%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W ++L  ++   G+   LP+ LP          +P ++ISLGLDL+GG HL L VD D 
Sbjct: 6   RWKIVLTLLVVVFGVSYLLPS-LPAVQNSGMARFLPDDKISLGLDLKGGIHLTLGVDMDK 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVN 123
            ++  L    D+L++  ++EG+ V         +I         K+ +   V      + 
Sbjct: 65  AMDNNLARMGDDLKAVAREEGVIVLKPTVLKGERIEAVLLKEAQKDKLEKLVKDTFGNL- 123

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                      +    +       +      +    ++Q+++ IR RIDQ G++E  I++
Sbjct: 124 -----TILSTAVKPDGKVTYVFAPTPEYKKYLTKLTMDQAIKTIRNRIDQFGVAEPDIRK 178

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR------------ 231
              +RI +QLPG QDP R  +++G TA + F  V      +    G+             
Sbjct: 179 QQGNRIQVQLPGMQDPERAIKIIGKTAHLEFKLVDDVADLEKAQKGIVAPGRELTVIMHR 238

Query: 232 -FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                      +++    ++G ++  A   FD    +P V ++F+  GAR F  VT +NI
Sbjct: 239 LPDGSYIEKPIVLKKDAMLTGEYITDAQTRFDQFN-QPYVTLNFNSRGARIFERVTGENI 297

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
            K +A+VLDG+V +AP I   I  G+A I+G++T E A  LA +LRAGSLP  + I+E+R
Sbjct: 298 KKRMAIVLDGKVYSAPTIQDKIAGGRASITGSYTTEEAHDLAIVLRAGSLPAPVKILEQR 357

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG  LG +SI KG  A V G VL+++FM+V YG  G+VAD  + LNV+L LA L+  GA
Sbjct: 358 TVGPSLGQESIDKGISAAVVGSVLVLVFMLVYYGFAGIVADVVLVLNVVLILAGLAAFGA 417

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAGI+L IG+AVD+N+++ ERIREE R+  +   ++  G+SRA  TI D+NIT 
Sbjct: 418 TLTLPGIAGIILTIGMAVDANVIIFERIREELRRGLTAKAAIVEGYSRATLTILDANITT 477

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           +IA V+L+ FG G VRGFA+T+ L I+ SMFTAI + R +       +
Sbjct: 478 VIAAVILYQFGTGPVRGFAVTLTLGIITSMFTAIFVTRILFDLYTSKR 525



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 110/250 (44%), Gaps = 5/250 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V    ++  +  +  G +       +K    R       +  +   L +V +  +
Sbjct: 287 RIFERVTGENIKKRMAIVLDGKVYSAPTIQDKIAGGRASITGSYTTEEAHDLAIVLRAGS 346

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
              P+  ++   + GP + +E I KGI   ++ ++ +L+++ + + +   + A   L+L+
Sbjct: 347 LPAPVKILEQRTV-GPSLGQESIDKGISAAVVGSVLVLVFMLVYYGF-AGIVADVVLVLN 404

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L   A FG    L  +A ++  IG +V+  V++++R+R+ ++     ++ +  I +
Sbjct: 405 VVLILAGLAAFGATLTLPGIAGIILTIGMAVDANVIIFERIREELR---RGLTAKAAIVE 461

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +      +  ++   I+ + +  +G   +  FA+ +  GI+ +  ++IF+   +    
Sbjct: 462 GYSRATLTILDANITTVIAAVILYQFGTGPVRGFAVTLTLGIITSMFTAIFVTRILFDLY 521

Query: 824 YDWRAKNARI 833
              RA +A +
Sbjct: 522 TSKRAADAPL 531


>gi|15640763|ref|NP_230393.1| preprotein translocase subunit SecF [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591449|ref|ZP_01678725.1| protein-export membrane protein SecF [Vibrio cholerae 2740-80]
 gi|121729718|ref|ZP_01682159.1| protein-export membrane protein SecF [Vibrio cholerae V52]
 gi|147673073|ref|YP_001216229.1| preprotein translocase subunit SecF [Vibrio cholerae O395]
 gi|153216241|ref|ZP_01950341.1| protein-export membrane protein SecF [Vibrio cholerae 1587]
 gi|153818828|ref|ZP_01971495.1| protein-export membrane protein SecF [Vibrio cholerae NCTC 8457]
 gi|153822724|ref|ZP_01975391.1| protein-export membrane protein SecF [Vibrio cholerae B33]
 gi|153824549|ref|ZP_01977216.1| protein-export membrane protein SecF [Vibrio cholerae MZO-2]
 gi|153829383|ref|ZP_01982050.1| protein-export membrane protein SecF [Vibrio cholerae 623-39]
 gi|227080923|ref|YP_002809474.1| protein-export membrane protein SecF [Vibrio cholerae M66-2]
 gi|229505642|ref|ZP_04395152.1| protein-export membrane protein SecF [Vibrio cholerae BX 330286]
 gi|229510686|ref|ZP_04400165.1| protein-export membrane protein SecF [Vibrio cholerae B33]
 gi|229513117|ref|ZP_04402583.1| protein-export membrane protein SecF [Vibrio cholerae TMA 21]
 gi|229517808|ref|ZP_04407252.1| protein-export membrane protein SecF [Vibrio cholerae RC9]
 gi|229523433|ref|ZP_04412840.1| protein-export membrane protein SecF [Vibrio cholerae TM 11079-80]
 gi|229525390|ref|ZP_04414795.1| protein-export membrane protein SecF [Vibrio cholerae bv. albensis
           VL426]
 gi|229530126|ref|ZP_04419516.1| protein-export membrane protein SecF [Vibrio cholerae 12129(1)]
 gi|229608660|ref|YP_002879308.1| preprotein translocase subunit SecF [Vibrio cholerae MJ-1236]
 gi|254225009|ref|ZP_04918623.1| protein-export membrane protein SecF [Vibrio cholerae V51]
 gi|254285462|ref|ZP_04960426.1| protein-export membrane protein SecF [Vibrio cholerae AM-19226]
 gi|254847881|ref|ZP_05237231.1| protein-export membrane protein SecF [Vibrio cholerae MO10]
 gi|255744551|ref|ZP_05418502.1| protein-export membrane protein SecF [Vibrio cholera CIRS 101]
 gi|262161315|ref|ZP_06030426.1| protein-export membrane protein SecF [Vibrio cholerae INDRE 91/1]
 gi|262190473|ref|ZP_06048724.1| protein-export membrane protein SecF [Vibrio cholerae CT 5369-93]
 gi|262402872|ref|ZP_06079433.1| protein-export membrane protein SecF [Vibrio sp. RC586]
 gi|297581143|ref|ZP_06943067.1| protein-export membrane protein SecF [Vibrio cholerae RC385]
 gi|298499123|ref|ZP_07008930.1| protein-export membrane protein SecF [Vibrio cholerae MAK 757]
 gi|9655189|gb|AAF93909.1| protein-export membrane protein SecF [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546700|gb|EAX56879.1| protein-export membrane protein SecF [Vibrio cholerae 2740-80]
 gi|121628535|gb|EAX61018.1| protein-export membrane protein SecF [Vibrio cholerae V52]
 gi|124114386|gb|EAY33206.1| protein-export membrane protein SecF [Vibrio cholerae 1587]
 gi|125622396|gb|EAZ50716.1| protein-export membrane protein SecF [Vibrio cholerae V51]
 gi|126510610|gb|EAZ73204.1| protein-export membrane protein SecF [Vibrio cholerae NCTC 8457]
 gi|126519755|gb|EAZ76978.1| protein-export membrane protein SecF [Vibrio cholerae B33]
 gi|146314956|gb|ABQ19495.1| protein-export membrane protein SecF [Vibrio cholerae O395]
 gi|148875103|gb|EDL73238.1| protein-export membrane protein SecF [Vibrio cholerae 623-39]
 gi|149741767|gb|EDM55796.1| protein-export membrane protein SecF [Vibrio cholerae MZO-2]
 gi|150424324|gb|EDN16261.1| protein-export membrane protein SecF [Vibrio cholerae AM-19226]
 gi|227008811|gb|ACP05023.1| protein-export membrane protein SecF [Vibrio cholerae M66-2]
 gi|227012568|gb|ACP08778.1| protein-export membrane protein SecF [Vibrio cholerae O395]
 gi|229333900|gb|EEN99386.1| protein-export membrane protein SecF [Vibrio cholerae 12129(1)]
 gi|229338971|gb|EEO03988.1| protein-export membrane protein SecF [Vibrio cholerae bv. albensis
           VL426]
 gi|229339796|gb|EEO04811.1| protein-export membrane protein SecF [Vibrio cholerae TM 11079-80]
 gi|229344523|gb|EEO09497.1| protein-export membrane protein SecF [Vibrio cholerae RC9]
 gi|229350010|gb|EEO14964.1| protein-export membrane protein SecF [Vibrio cholerae TMA 21]
 gi|229350651|gb|EEO15592.1| protein-export membrane protein SecF [Vibrio cholerae B33]
 gi|229357865|gb|EEO22782.1| protein-export membrane protein SecF [Vibrio cholerae BX 330286]
 gi|229371315|gb|ACQ61738.1| protein-export membrane protein SecF [Vibrio cholerae MJ-1236]
 gi|254843586|gb|EET22000.1| protein-export membrane protein SecF [Vibrio cholerae MO10]
 gi|255737582|gb|EET92976.1| protein-export membrane protein SecF [Vibrio cholera CIRS 101]
 gi|262029065|gb|EEY47718.1| protein-export membrane protein SecF [Vibrio cholerae INDRE 91/1]
 gi|262033645|gb|EEY52134.1| protein-export membrane protein SecF [Vibrio cholerae CT 5369-93]
 gi|262351654|gb|EEZ00787.1| protein-export membrane protein SecF [Vibrio sp. RC586]
 gi|297534459|gb|EFH73296.1| protein-export membrane protein SecF [Vibrio cholerae RC385]
 gi|297543456|gb|EFH79506.1| protein-export membrane protein SecF [Vibrio cholerae MAK 757]
 gi|327483531|gb|AEA77938.1| Protein-export membrane protein SecF [Vibrio cholerae LMA3894-4]
          Length = 315

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 165/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR   +   +S++    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKADKMIDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +RS LE+   GD + QNF   ++ +VRL+ +  D   +    +++           
Sbjct: 61  NLEQIRSALEAKGFGDATVQNFGSARDVMVRLRPRD-DMAGEALGNQILAAIKEGTGGNV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S + +L+Y+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         ++++ SI +TL
Sbjct: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GG++I  FA+ +  GI V   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297


>gi|291278528|ref|YP_003495363.1| preprotein translocase subunit F [Deferribacter desulfuricans SSM1]
 gi|290753230|dbj|BAI79607.1| preprotein translocase subunit F [Deferribacter desulfuricans SSM1]
          Length = 299

 Score =  226 bits (576), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 113/299 (37%), Positives = 174/299 (58%), Gaps = 1/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F +I     I FM        IS L  + SI ++FT G N GIDF GG  + V  + P 
Sbjct: 1   MFEIIKPGTKIDFMGKSKLFFIISGLLVLLSIVIIFTKGFNLGIDFAGGTVIQVRFDSPP 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L ++R N++ L +GD+  QNF  E+  L+R++    D  A    ++      +      
Sbjct: 61  KLDLLRENIKKLNLGDVVIQNFGDEREVLIRVEKTNQDLNAVANDIKKALSG-SFKGNKF 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP++  EL +K  + VI + I +LIY+ +RF++ F+LGA+  L  D+  TLG
Sbjct: 120 IVERVEQVGPQVGSELQKKATMAVIYALIGILIYVTVRFEFIFSLGAVLALFHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L   E NL  VAAVLT++GYS+ND +VVYDR+R+ M+  T  I+  DLI++SINETL
Sbjct: 180 AFSLASKEINLPIVAAVLTIVGYSLNDTIVVYDRIRERMRNSTAKINLIDLINQSINETL 239

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS   F++VL + ++G  VI +F+  +  GI+V   SSI IA+ ++  I + + 
Sbjct: 240 SRTLLTSFTTFLAVLALYLFGSEVIKNFSFALLVGIIVGTYSSIGIASALVYSIKNIKK 298


>gi|325268061|ref|ZP_08134707.1| protein-export membrane protein SecD [Kingella denitrificans ATCC
           33394]
 gi|324980446|gb|EGC16112.1| protein-export membrane protein SecD [Kingella denitrificans ATCC
           33394]
          Length = 619

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 167/507 (32%), Positives = 286/507 (56%), Gaps = 25/507 (4%)

Query: 29  QSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
           Q+ +   P  + K     + LGLDLRGG H  ++VD    +   L  Y+ + R  L+++ 
Sbjct: 102 QNQIANSPEWLEKIGARPMFLGLDLRGGVHFTMQVDMKAALEKTLDRYAGDARRTLRQQR 161

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           I   ++R+  N + + F D+   + +  ++   ++G              +T+   +++I
Sbjct: 162 IRTGTIRKSGNSLIIPFQDAADIQKVLPELNNMMEGAQ------------LTSEGTQLTI 209

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            L +  + Q+ S A++Q++  +  R++++G +E  IQ+ G+ RI++QLPG  D ++ + +
Sbjct: 210 TLPETLLAQIRSDAVKQNINTLHNRVNELGTAEPVIQQAGADRIVVQLPGMTDTAKAKDI 269

Query: 206 LGTTAKMSFHKVL------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           +G TA +    V           +         L D++GN YLV  +VE++G ++N A A
Sbjct: 270 IGRTATLEVRMVSTDPALMEQAKQGNIPADYELLTDAEGNGYLVSKQVELTGDNINSAQA 329

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSG 315
            F    ++P VD++ D  G+R F ++T  N GK +A+VL  +    V+TAP IN+ I  G
Sbjct: 330 GFSHNDNRPAVDLTLDNAGSRIFGDLTSANKGKIMAMVLIDQGKSEVITAPRINEPILGG 389

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           + QI+G  ++  A  +A +LRAGSL   + IVEER +G  LG+++I KG  + V G   +
Sbjct: 390 RVQITGMESVAAANDVALLLRAGSLAAPMEIVEERTIGPSLGAENISKGIHSTVWGFAAV 449

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
            LFM+V Y  +G+ +  ++  N++   A+LS L ATLTLP IA + L +G+A+DSN+L+N
Sbjct: 450 ALFMMVYYRLFGVFSSIALSANLLFLFAILSALQATLTLPGIAAMALTLGMAIDSNVLIN 509

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERIREE    +    ++  G+  A+ TI DSN+T+LIA + L  FG G VRGFAI   L 
Sbjct: 510 ERIREELHAGKKPQAAIKEGYDHAWDTILDSNLTSLIAGIALLIFGSGPVRGFAIVHCLG 569

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKS 522
           I+ S+++++ + RA++      ++   
Sbjct: 570 IMTSIYSSVVVSRALVNLWYGSRRKLK 596



 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 84/212 (39%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  E I KGI   +    A+ 
Sbjct: 391 VQITGMESVAAANDVALLLRAGSLAAPMEIVEERTIGPSLGAENISKGIHSTVWGFAAVA 450

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + ++  F + +   L  ++       +       L  +AA+   +G +++  V++ 
Sbjct: 451 LFMMVYYRL-FGVFSSIALSANLLFLFAILSALQATLTLPGIAAMALTLGMAIDSNVLIN 509

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ +         +  I +  +      + +++ + I+ + + ++G   +  FAI  
Sbjct: 510 ERIREELHAGKK---PQAAIKEGYDHAWDTILDSNLTSLIAGIALLIFGSGPVRGFAIVH 566

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  SS+ ++  ++   Y  R K   I
Sbjct: 567 CLGIMTSIYSSVVVSRALVNLWYGSRRKLKHI 598


>gi|327398934|ref|YP_004339803.1| protein-export membrane protein SecF [Hippea maritima DSM 10411]
 gi|327181563|gb|AEA33744.1| protein-export membrane protein SecF [Hippea maritima DSM 10411]
          Length = 321

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 161/304 (52%), Gaps = 2/304 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               I   I I F+      + IS++  +  +  L   G   GI+FKGG  + +   +PV
Sbjct: 1   MIQFIKPGILIDFVSKFKVAIAISLILIVIGMGHLIWKGPKLGIEFKGGTSIQLEFEKPV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV-PL 648
           ++  +R  +++ +    S     G  +    +  +   S     +   +K  +       
Sbjct: 61  NVVDLRGAIKNSRFFADSRIQSIGGSSKRYIVYTKVSTSSTTESIESKLKSLLDAKFKGS 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I   ++VGPK+ +E   KG++ + +S IA+L+YI IRF++ FA+GAI  L+ D+  T+
Sbjct: 121 YKILEVDMVGPKVGKEFRDKGLIAIALSLIAILVYISIRFQYRFAVGAILALLHDVLITV 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           GF ++FG EF L  VAA+LT++GYSVND +V++DR+R+ +K    ++S  + I++ ++ET
Sbjct: 181 GFLSIFGYEFTLDVVAAILTIVGYSVNDTIVIFDRIREKVKTN-RNLSNVEAINRGVSET 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ T+      VL + ++GG  +   +  +  GI+    SSIFIA+P+LL       
Sbjct: 240 LSRTILTAGTTLFVVLSLYLFGGHALKGMSFALLVGIISGTYSSIFIASPVLLMFKGALI 299

Query: 829 KNAR 832
              +
Sbjct: 300 PQKK 303


>gi|296284696|ref|ZP_06862694.1| preprotein translocase subunit SecD [Citromicrobium bathyomarinum
           JL354]
          Length = 532

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 184/535 (34%), Positives = 297/535 (55%), Gaps = 18/535 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W  I    +  +    A+P+F   + +  FP ++P   ++LGLDL GGSH++LE 
Sbjct: 2   LEFPRWRKIWLWALTLVVAACAIPSFFSIANIP-FPRSLPDPTVNLGLDLAGGSHILLEA 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                    L+   + +R+ ++     I +  +     +++    D    +   + +T  
Sbjct: 61  QPAQVAAQRLENLEESVRTAMRDASPQIRIGDVSTRGGRLSFMLDDPSEIDRAREVLTPL 120

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           + G         ++  L       I +  +   +D+ ++ A++ + +++R+RID++G  E
Sbjct: 121 MNGTGL-----TRQWELSVVDTSRIVLTPTAQGLDEAVTQAMDSATDVVRRRIDELGTRE 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD- 237
            TI R G  RI++Q+PG QDP +L++LLG TAK+ F  V           G+        
Sbjct: 176 PTILRQGDTRIVVQVPGLQDPEQLKELLGQTAKLEFKLVDQEALPSDVAEGIAPPGSEIF 235

Query: 238 ---------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                    G    V     I G  L  A A  DP+ +  +V+I FD  G +RF ++T  
Sbjct: 236 PFAEGSAFEGTSLAVRRLGGIQGDSLVNAQAGVDPQDNSNIVNIQFDSQGGQRFAQLTTQ 295

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           N+GKP A++LDG VL+AP IN+ I  G A+ISG FT ++A  LA  LR+G+LP+ L+IVE
Sbjct: 296 NVGKPFAIILDGEVLSAPNINEPIRGGAARISGGFTADSANALAISLRSGALPVDLSIVE 355

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER VG DLG+DSI  G  A+  G +L+V  MI  YG++G+ A  ++ +NVI+ L +++ L
Sbjct: 356 ERTVGPDLGADSIRAGLLAMGIGSILVVALMIATYGRFGVYATCALVINVIMILGIMAAL 415

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
             TLTLP IAG VL IG AVD+N+L+NERIREE ++ + V  +++ G+  A   I+D+NI
Sbjct: 416 NTTLTLPGIAGFVLTIGAAVDANVLINERIREERKRGRRVVTAVENGYREASRAIYDANI 475

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           T  IA V+LF FG G +RGFA+ + + +  S+FT +++ R  +   ++ K+ + I
Sbjct: 476 TNFIAGVLLFLFGSGPIRGFAVVLIIGLFTSVFTGVTMTRMWVAGWLKAKRPREI 530



 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 73/175 (41%), Gaps = 8/175 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR G++ + I +I ++  +   +   F + A   L++++   LG  A     
Sbjct: 360 GPDLGADSIRAGLLAMGIGSILVVALMIATYG-RFGVYATCALVINVIMILGIMAALNTT 418

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++ +R+R+  K           ++    E        ++
Sbjct: 419 LTLPGIAGFVLTIGAAVDANVLINERIREERKRGRR---VVTAVENGYREASRAIYDANI 475

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             FI+ + + ++G   I  FA+ +  G+     +S+F    +         K  R
Sbjct: 476 TNFIAGVLLFLFGSGPIRGFAVVLIIGL----FTSVFTGVTMTRMWVAGWLKAKR 526


>gi|120613275|ref|YP_972953.1| preprotein translocase subunit SecD [Acidovorax citrulli AAC00-1]
 gi|120591739|gb|ABM35179.1| protein-export membrane protein SecD [Acidovorax citrulli AAC00-1]
          Length = 632

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 169/514 (32%), Positives = 280/514 (54%), Gaps = 21/514 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N + +S    + +A+    + LGLDLRGG H +L+VD    +    + ++ +LR+
Sbjct: 104 YIVALNLVSRSP--AWLTALHAQPVYLGLDLRGGVHFMLQVDMQAALTKKAESFAGDLRT 161

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
           F++   I    + +    I +   D        + ++     + +  +      ++    
Sbjct: 162 FMRDRNIRHGGISRDGQTIEVRLRDEAAATATRNLISDQFPDLVATSSPGGDGVIV---- 217

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
                  +    + +V   A++Q++  +  RI+++G++E  IQ+ G+ RI++QLPG QD 
Sbjct: 218 ----RATIKPEALRKVQDQALKQNITTLHNRINELGVAEPVIQQQGTDRIVVQLPGVQDT 273

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDSDGNQYLVEDKVEISGI 252
           ++ + +LG TA +    V  +   +G   G            D +G   +V+ +V ++G 
Sbjct: 274 AKAKDILGRTATLEVRMVDESTEARGAERGSGPVPFGSERYPDRNGQFIIVKKQVILTGE 333

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308
           +L  A   FD +T +P V+++ D  GAR F ++TR+NIGK +         G V+TAPVI
Sbjct: 334 NLTDAQPGFDGQTQEPTVNLTLDAKGARIFKDITRENIGKRMAIVLFEKGKGEVVTAPVI 393

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I  G+ QISG  T   A   + +LRAGSL   + I+EE  +G  LG+D+I +G  ++
Sbjct: 394 RSEIGGGRVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEFTIGPSLGADNISRGIHSV 453

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
           V G+V I +FM V Y  +G+ +  ++ +NV++ +A+LS+L ATLTLP IA + L +G+A+
Sbjct: 454 VWGMVAIAVFMCVYYALFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAI 513

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           DSN+L+NERIREE R   +   ++  G+ RA++TI DSN+T LIA + L  FG G VRGF
Sbjct: 514 DSNVLINERIREELRAGVAPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGSGPVRGF 573

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           A+   L IL SMF+A+   R ++      KK   
Sbjct: 574 AVVHCLGILTSMFSAVFFSRGLVNLWYGRKKKLK 607



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 87/212 (41%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I +GI  V+   +A+ 
Sbjct: 402 VQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEFTIGPSLGADNISRGIHSVVWGMVAIA 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + +   F + +   L +++   +   ++      L  +AA+   +G +++  V++ 
Sbjct: 462 VFMCVYYAL-FGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     ++ +  I           + +++   I+ L +  +G   +  FA+  
Sbjct: 521 ERIREELRA---GVAPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++F +  ++   Y  + K   +
Sbjct: 578 CLGILTSMFSAVFFSRGLVNLWYGRKKKLKSV 609



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 34/135 (25%), Gaps = 31/135 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  ++  +G+L +LPN   ++                           ++V 
Sbjct: 3   RYPVWKYAILVIVLLVGILYSLPNVFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                          +   L+  GI    +    N +   F     +    D +   L  
Sbjct: 38  SAKASVKVDASLQRRVEEALQGAGITPDVVSLDGNSVRARFDTPDTQLKAKDVIQKAL-- 95

Query: 122 VNSKLNVDPKKNLLV 136
               +        +V
Sbjct: 96  ----VPDAADPQYIV 106


>gi|302879495|ref|YP_003848059.1| protein-export membrane protein SecD [Gallionella capsiferriformans
           ES-2]
 gi|302582284|gb|ADL56295.1| protein-export membrane protein SecD [Gallionella capsiferriformans
           ES-2]
          Length = 603

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 172/512 (33%), Positives = 289/512 (56%), Gaps = 21/512 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            +   N LP+S   ++ + M    + LGLDLRGG H +L+VD    ++  L+  + ++RS
Sbjct: 99  YVVALNLLPRSP--QWLTDMHALPMYLGLDLRGGVHFLLQVDMKAALDKALEAATGDIRS 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++E +    + +  N + + F D+  +     ++                  L+    
Sbjct: 157 ALREENVAYSGVSREGNTLLVKFRDAAARAKGEAQLKQRFS----------DYALVDKEL 206

Query: 140 EKEISIVLS--QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
             E  +  +       ++   A++Q++  +R R++++G++E  IQ+ G+ R+++QLPG Q
Sbjct: 207 NGEFLLQATLKPEAEHRIGESAVQQNLLTLRNRVNELGVAEPVIQQQGADRVVVQLPGVQ 266

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGF---MFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           D +R + +LG TA +    V   +         FG    +D +G   LV+ +V ++G  +
Sbjct: 267 DTARAKDILGRTATLEVRMVDDEHQVGAGGVAPFGTEMFKDREGVSILVKKQVMLTGERI 326

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQ 310
           N A   FD + ++  V I+ D +GAR+F + TR+N+GK +         G ++TAPVI +
Sbjct: 327 NDAQPGFDNQNNEAAVHINLDGVGARKFKDATRENVGKRMAIILFEKGRGEIVTAPVIRE 386

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            I  G+ QISG  T E A   A +LRAG+L   + IVEER VG  LG+D+I +G  +   
Sbjct: 387 EIGGGRVQISGRMTTEEAQDTALLLRAGALAAPMEIVEERTVGPSLGADNIARGFNSTKI 446

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
           G +LI +FM+  Y  +G ++  ++  N++L +ALLS++ ATLTLP +AGI L +G+A+DS
Sbjct: 447 GFMLIAVFMVAYYLMFGTISVVALAANLLLLIALLSMMQATLTLPGMAGIALTLGMAIDS 506

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
           N+L+NERIREE R   S   ++  G+  A++TI DSNIT LIA + LF FG G ++GFA+
Sbjct: 507 NVLINERIREELRNGISPQAAIHAGYDNAFATIVDSNITNLIAGIALFLFGSGPIKGFAV 566

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            + L IL SMF+++ + RA++  +   +   +
Sbjct: 567 VLCLGILTSMFSSVLVSRAIVNLVYGRRARLT 598



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 86/208 (41%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G    +      +  +   +     I     VGP +  + I +G     I  + + 
Sbjct: 393 VQISGRMTTEEAQDTALLLRAGALAAPMEIVEERTVGPSLGADNIARGFNSTKIGFMLIA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++   +   F   ++  L  ++   +   ++      L  +A +   +G +++  V++ 
Sbjct: 453 VFMVAYY-LMFGTISVVALAANLLLLIALLSMMQATLTLPGMAGIALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     IS +  I    +      V +++   I+ + + ++G   I  FA+ +
Sbjct: 512 ERIREELR---NGISPQAAIHAGYDNAFATIVDSNITNLIAGIALFLFGSGPIKGFAVVL 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ ++  I+  +Y  RA+
Sbjct: 569 CLGILTSMFSSVLVSRAIVNLVYGRRAR 596



 Score = 44.3 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L   +  +GL+  LPNF  +S   +    +P                 L   
Sbjct: 3   RYPLWKYLLILAVLLVGLIYTLPNFFGESPAVQ---ILP-----------------LRAS 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               +          + + LK   +    +    N I   FAD+  +    D +   L
Sbjct: 43  MKADIA-----LLGRVEAALKAGNLNTEMVALDGNSIKARFADTDLQLKAKDLLKAQL 95


>gi|258619942|ref|ZP_05714982.1| protein export protein SecF [Vibrio mimicus VM573]
 gi|262165056|ref|ZP_06032793.1| protein-export membrane protein SecF [Vibrio mimicus VM223]
 gi|258587675|gb|EEW12384.1| protein export protein SecF [Vibrio mimicus VM573]
 gi|262024772|gb|EEY43440.1| protein-export membrane protein SecF [Vibrio mimicus VM223]
          Length = 315

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR   +   +S++    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKADKMIDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ LE+   GD + QNF   ++ +VRL+ +  D   +    +++           
Sbjct: 61  NLEQIRTALEAKGFGDATVQNFGSARDVMVRLRPRD-DMAGEALGNQILAAIKEGTGGNV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S + +L+Y+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         ++++ SI +TL
Sbjct: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GG++I  FA+ +  GI V   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297


>gi|332992258|gb|AEF02313.1| protein-export membrane protein SecF [Alteromonas sp. SN2]
          Length = 313

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 96/298 (32%), Positives = 165/298 (55%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+     I FMR R   + +S +  + S   L  + LN+G+DF GG  + V      +
Sbjct: 1   MQLLKLSETINFMRLRVPAMVLSTILILGSFVSLGVNSLNWGLDFTGGTLIEVGYEDSAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R+ L + +  D   QNF   +  L+R+  + G   A   + E V   +        
Sbjct: 61  LESIRALLNNAEFEDAIVQNFGSSQEVLIRIAPRDGVKAAT--IGEQVLAALRADGTTVD 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP +  EL  +G + ++++ I +L+Y+ +RF+W FALG+++ L  D+  TLG 
Sbjct: 119 MRRIEFVGPNVGEELTEQGGLAMLVALICILVYVAMRFEWRFALGSVSALAHDVILTLGL 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F++  IEF+LT +AAVL +IGYS+ND +VV DR+R+N +         D+I+ S+ +TL 
Sbjct: 179 FSILQIEFDLTVLAAVLAVIGYSLNDTIVVSDRIRENFRKIRKGEPI-DIINISLTQTLN 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS+   + ++ +   GG++I  FA  + FG+VV   SS++IA+ + L +   + 
Sbjct: 238 RTIITSLTTVLVLVALFYKGGALIHGFATALLFGVVVGTYSSVYIASSVALALGISKE 295


>gi|332141984|ref|YP_004427722.1| protein-export membrane protein SecF [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552006|gb|AEA98724.1| protein-export membrane protein SecF [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 313

 Score =  226 bits (575), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 93/298 (31%), Positives = 162/298 (54%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+     + FMR R   + +S +  + S   L  + LN+G+DF GG  + V      D
Sbjct: 1   MQLLKLSETVNFMRLRIPAMVLSTVLILGSFVSLGVNSLNWGLDFTGGTLIEVGYEDSAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  L      D   QNF   ++ L+R+  + G       + E V   +        
Sbjct: 61  LEAIRVQLNESNFEDAIVQNFGSSQDVLIRIAPRDGVKAVT--IGEQVLAALRADGTSVD 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP +  EL  +G + ++++ + +L+Y+ +RF+W FALG+++ L  D+  TLG 
Sbjct: 119 MRRIEFVGPNVGEELTEQGGLAMLVALLCILVYVAMRFEWRFALGSVSALAHDVILTLGL 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F++  IEF+LT +AAVL +IGYS+ND +VV DR+R+N +         ++I+ S+ +TL 
Sbjct: 179 FSVLQIEFDLTVLAAVLAVIGYSLNDTIVVSDRIRENFRKIRKGEPV-EIINISLTQTLN 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS+   + ++ +   GG++I  FA  + FG+VV   SS++IA+ + L +   + 
Sbjct: 238 RTIITSLTTVLVLVALFYKGGALIHGFATALLFGVVVGTYSSVYIASSVALALGISKE 295


>gi|254293771|ref|YP_003059794.1| protein-export membrane protein SecD [Hirschia baltica ATCC 49814]
 gi|254042302|gb|ACT59097.1| protein-export membrane protein SecD [Hirschia baltica ATCC 49814]
          Length = 530

 Score =  226 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 173/534 (32%), Positives = 286/534 (53%), Gaps = 16/534 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   W  +L   +  +G  + LPN L        P  MP   + LGLDL+GGS+L+LEV
Sbjct: 2   LQFALWKRLLVIGVVLLGAWLCLPNLLNAGQRAGLPGFMPSETVKLGLDLKGGSYLLLEV 61

Query: 61  DEDDFVNGFLQMYSDELRSFL----KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           D ++     L   S +++  L             +     +  +        +    +V 
Sbjct: 62  DPEELQQNRLLELSRDIQRTLIKKPNNVKFRGREVVDGGVRFRVMEP--TQIDEAKRRVR 119

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                V        +++L ++     +++  S   ++++   A+  S+E++R+R+D  G 
Sbjct: 120 ELSSPVGGI---GGQQSLNISEQNGVMNVTFSSARLEELEVEALNDSIEVVRRRVDGSGT 176

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF---- 232
           ++  IQR GS+RI++++PG  DP+ L +L+     M+ + V        +          
Sbjct: 177 TDPNIQRQGSNRIVLEVPGLDDPTELIELIQRAGVMTVNLVDETADASQYRLDEPRLGKV 236

Query: 233 --LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                    +Y+V +   ++G       +    + ++P ++ +    G + F + T ++I
Sbjct: 237 KRQDAYSAREYVVHEDPILTGADFAT-ASQGFDENNRPQINFTLKGRGPKVFGDFTSEHI 295

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
               A+VLDG+V++A  +   I SG  +I+G+F I+ A  +A +LRAG LP KL +VE+R
Sbjct: 296 NDSFAIVLDGQVISAASVRSPILSGSGRITGSFEIQEANAIAIVLRAGELPAKLQVVEQR 355

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VGA LG DSI  GT A   GL L+ +FMI+ YG WG+ A  S+  N++L +  LS LGA
Sbjct: 356 VVGAGLGEDSIRAGTTASAIGLALVAIFMILAYGLWGVFAVISLAANIMLIIGSLSGLGA 415

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAGI+L IG+AVD+N+LV ERIREE++  +S   S+++G+ +A STI D+N+T 
Sbjct: 416 TLTLPGIAGIILTIGMAVDANVLVFERIREEHKNGRSPITSIEIGYKQASSTILDANLTT 475

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           LIA  VLF+ G G V+GFA+T+G+ +  S+FTA  + R  M   +R  + K + 
Sbjct: 476 LIAAAVLFWLGSGPVKGFAVTLGIGVFTSVFTAFVLTRMFMADWVRTVRPKKLP 529



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 80/209 (38%), Gaps = 5/209 (2%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +  E+     +    +VG  +  + IR G     I    + I++
Sbjct: 325 TGSFEIQEANAIAIVLRAGELPAKLQVVEQRVVGAGLGEDSIRAGTTASAIGLALVAIFM 384

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + +   + + A+ +L  +I   +G  +  G    L  +A ++  IG +V+  V+V++R+
Sbjct: 385 ILAYGL-WGVFAVISLAANIMLIIGSLSGLGATLTLPGIAGIILTIGMAVDANVLVFERI 443

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+    +    S    I+    +     +  ++   I+   +   G   +  FA+ +  G
Sbjct: 444 REE---HKNGRSPITSIEIGYKQASSTILDANLTTLIAAAVLFWLGSGPVKGFAVTLGIG 500

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +  +  ++  +    +        +  ++
Sbjct: 501 VFTSVFTAFVLTRMFMADW-VRTVRPKKL 528


>gi|17547434|ref|NP_520836.1| preprotein translocase subunit SecD [Ralstonia solanacearum
           GMI1000]
 gi|17429737|emb|CAD16422.1| probable-export membrane protein secd transmembrane [Ralstonia
           solanacearum GMI1000]
          Length = 626

 Score =  226 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 167/515 (32%), Positives = 273/515 (53%), Gaps = 26/515 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL   P +L                + LGLDLRGG H +L+VD +  +   L   
Sbjct: 109 IVALNLLSGSPRWLTAIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+ +G+    + +    I++ F +    +     +    +        +    
Sbjct: 160 AGDIRTQLRDKGVRHSGIERSGTTISIKFTNPDEADRARGLLADSAR--------ELAFT 211

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           +  T     ++   +   + +V  +A++Q++  +  R++++G+SE  IQ+ G  RI++QL
Sbjct: 212 VDKTADGATLTGTFTAAAMKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +      PN +           G        G   L++ +V 
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPNATGIPRATDPVPLGDELFTQGRGAPVLLQKQVI 331

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +N A+A FD   H P VDI+ D  G R   +V+RDNIGK + +VL  +    +  
Sbjct: 332 FTGDRINSASAGFDQN-HNPSVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 390

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  ++E+A  LA +LRAGSL   + I+EER +G  LG+D+I KG 
Sbjct: 391 VATIQSELGSRFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 450

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            +   G   I +FM++ Y  +G  +  ++ +NV L +A+LS+L ATLTLP IA I L +G
Sbjct: 451 NSAAYGFAAISVFMVLYYMLFGAFSVVALGVNVFLLIAILSMLQATLTLPGIAAIALALG 510

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NER+REE R   S   ++  GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 511 MAIDANVLINERVREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFA+   L IL SMF+A+   R+++      KK 
Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605



 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 78/185 (42%), Gaps = 4/185 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG         A+ +++ + +   F   ++  L +++   +
Sbjct: 429 MEIIEERTIGPSLGADNIKKGFNSAAYGFAAISVFMVLYY-MLFGAFSVVALGVNVFLLI 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++      S +  I       
Sbjct: 488 AILSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGASPQMAIAAGFERA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FA+    GI+ +  S++F    ++   Y  + 
Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604

Query: 829 KNARI 833
           K   +
Sbjct: 605 KLQSL 609



 Score = 37.7 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34
          R   W  ++  +   IG L  LPNF  ++   +
Sbjct: 3  RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQ 35


>gi|194290675|ref|YP_002006582.1| preprotein translocase subunit SecD [Cupriavidus taiwanensis LMG
           19424]
 gi|193224510|emb|CAQ70521.1| Protein-export membrane protein secD [Cupriavidus taiwanensis LMG
           19424]
          Length = 623

 Score =  226 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 163/515 (31%), Positives = 272/515 (52%), Gaps = 30/515 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL   P +L                + LGLDLRGG H +L+VD    V+  L   
Sbjct: 109 VVALNLLSGSPRWLTSLHA---------LPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ + I    + +   ++T+ F ++         +   ++ V           
Sbjct: 160 AGDARTLLRDKNIRHGGIDRDGERLTVRFNNADDASRARTLLADNVREV----------- 208

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                    I    ++     V   A++Q++  +  R++++G++E  IQ+ G+ RI++QL
Sbjct: 209 -AFAMDGNNIVGTFTEAARRAVQDAAVKQNITTLHNRVNELGVAEPVIQQQGADRIVVQL 267

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM-----FGVRFLRDSDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +    V  +  +         FG       +G   +++ +V 
Sbjct: 268 PGVQDTAKAKDIIGRTATLEARLVDNDAPRSPRPGDPIPFGSELFTQGNGAPVVLKKQVI 327

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +  A+A FD    +P V+I  D  G R   +V+R+N+ KP+A+VL  +    +  
Sbjct: 328 FTGDRIESASAGFDQNQ-QPSVNIKLDAQGGRVLRDVSRENLKKPMAIVLFEKGKGEVLT 386

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+      QI+G+++ E A  LA +LRAGSL   + I+EER +G  LG+D+I KG 
Sbjct: 387 VATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIEKGF 446

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            ++  G   I +FMI+ Y  +G+ +  ++ +N++L +A+LS+L ATLTLP IA I L +G
Sbjct: 447 DSVAYGFAAIGVFMILYYMLFGVFSVIALGVNLLLLIAVLSMLQATLTLPGIAAIALVLG 506

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NERIREE R   S   ++ +GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 507 MAIDANVLINERIREELRAGASPQMAIAVGFDRAWATILDSNVTTLIAGLALLAFGSGPV 566

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFA+   L IL SMF+A+   R ++      KK 
Sbjct: 567 RGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKK 601



 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I KG   V     A+ +++ + +   F + ++  L +++   +
Sbjct: 425 MEIIEERTIGPSLGADNIEKGFDSVAYGFAAIGVFMILYY-MLFGVFSVIALGVNLLLLI 483

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+  ++G +++  V++ +R+R+ ++      S +  I    +  
Sbjct: 484 AVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRA---GASPQMAIAVGFDRA 540

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FA+    GI+ +  S++F    ++   Y  + 
Sbjct: 541 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK 600

Query: 829 K 829
           K
Sbjct: 601 K 601



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG++  LPNF  ++   +  S     ++ L           ++  
Sbjct: 3   RYPLWKYLVILVALAIGIIYTLPNFFGEAPAVQVSSGKATVKVDL----------SMQKQ 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            ++ +            + L+ +G+    +      +   F  +  +    D ++  L  
Sbjct: 53  VEEILAQ----------NQLQPDGVFF-DISGQSGSVKARFRTTDEQLKAKDVLSRALNP 101


>gi|99080838|ref|YP_612992.1| preprotein translocase subunit SecF [Ruegeria sp. TM1040]
 gi|99037118|gb|ABF63730.1| protein translocase subunit secF [Ruegeria sp. TM1040]
          Length = 322

 Score =  226 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 176/305 (57%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+ +  +  F R     +GIS +  +         GLN+GIDF+GG  +   A + 
Sbjct: 1   MRLKLVREGTSFDFFRLWKLWLGISAMMVVIGFASFAIQGLNFGIDFRGGTTIRTEATQD 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642
           +D+ V R  +  L++GDI+                ++R++ Q       + V+  V+  +
Sbjct: 61  LDIGVYREAIAPLELGDITITEVFDPTFDEDQHVAMIRIEAQEDGEALSSDVIAAVQGAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             + P     + E VGPK+S EL++  ++ V ++  A+LIYIW+RF+W FALGA+  L+ 
Sbjct: 121 DAVAPGIKFISVESVGPKVSGELVQTAVIAVALAIGAVLIYIWLRFEWQFALGAVAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I+F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y       ++++
Sbjct: 181 DVILTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKK-PLAEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINETL R+V TS+   ++++ + V GG VI  F   M +G++V   SSIF+A+ ILL+
Sbjct: 240 ISINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIVGTYSSIFVASTILLW 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|109897556|ref|YP_660811.1| protein-export membrane protein SecF [Pseudoalteromonas atlantica
           T6c]
 gi|109699837|gb|ABG39757.1| protein translocase subunit secF [Pseudoalteromonas atlantica T6c]
          Length = 313

 Score =  226 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 92/298 (30%), Positives = 163/298 (54%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+     + FM  R     +S L  I S+  L  + LN+G+DF GG Q+ +      +
Sbjct: 1   MQLLNMKETVGFMSLRVPAAILSALLVIGSLVSLGVNQLNWGLDFTGGTQIEMRYEGVAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L      + + QN+   ++ L+R+    G       + + V   +    P   
Sbjct: 61  LDAVRAELTQAGFVEPTVQNYGSSQDILIRIAPMEGVKNV--EIGDRVVAALQAADPSVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +    VGP I  EL  +G + +++S + +L+Y+ +RF+W FALG++  L  D+  TLG 
Sbjct: 119 KRGIAFVGPNIGDELAEQGGLAMLVSLLCILVYVAMRFEWRFALGSVVALAHDVIITLGL 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F++  +EF+LT +AAVL +IGYS+ND +VV DR+R+N +    S +  ++I+ S+ +TL 
Sbjct: 179 FSILQLEFDLTVLAAVLAVIGYSLNDTIVVSDRIRENFRKIRNSET-EEIINISLTQTLN 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS+   + ++ +   GG+ I  FA  + FG+++   SSI++A+ + L++   R 
Sbjct: 238 RTIITSLTTILVLMSLFFLGGATIHGFATALLFGVIIGTYSSIYVASLVALWLGVSRE 295


>gi|85711202|ref|ZP_01042262.1| protein export protein SecD [Idiomarina baltica OS145]
 gi|85695115|gb|EAQ33053.1| protein export protein SecD [Idiomarina baltica OS145]
          Length = 614

 Score =  226 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 169/522 (32%), Positives = 281/522 (53%), Gaps = 37/522 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    PS +       + LGLDLRGG H ++E+D ++ +   L    D +RS L++E I
Sbjct: 104 NLAPATPSWLKSIGAEPMKLGLDLRGGVHFLMEIDMNEAMRKILDGMKDTIRSSLREERI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++    N I +        +     +    QG            ++V      +++ 
Sbjct: 164 RYTNVSVEDNAINVELRSDEDFQQAEQYLDGRYQGY----------QMVVDAETNTVTMR 213

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +++  + +   +A+ Q++ I+R R++++G++E  IQR G++RI+++LPG QD +R +++L
Sbjct: 214 MTEQKLAETRDYAVSQNITIMRNRVNELGVAEPVIQRQGANRIVVELPGVQDTARAKEIL 273

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V   N  +        FG   L   +G   L+++ V ++G H+       
Sbjct: 274 GATATLEFRMVDTENDVRDAVNGRVPFGSELLPSRNGGPQLLKEDVILTGDHIVN-AGVG 332

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
             + ++P V+I  D +G  +    T+DN+GKP+A V      T     +       +   
Sbjct: 333 YDEYNRPQVNIELDGVGGDKMSLATKDNVGKPMATVFMEYESTGERDAEGNLQFNKKAEV 392

Query: 322 NFTI-----------------ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                + A  L+ +LRAG+L   + IVEER VG  LG  +I  G
Sbjct: 393 VSVATIQSRLGSSFRITGVGPQEAQNLSLLLRAGALIAPIQIVEERTVGPSLGQQNIDAG 452

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
           T AI+ GLVL++LFM++ Y K+GLVAD ++  N++L + ++S++  ATLTLP +AGIVL 
Sbjct: 453 TQAIIWGLVLVLLFMVIYYRKFGLVADMALAANIVLIIGVMSMIPGATLTLPGMAGIVLT 512

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+ ERIREE R  +S   ++  G+  A STI D+NIT LIA ++LF  G G
Sbjct: 513 VGMAVDANVLIFERIREEIRAKRSPQQAIHHGYDSALSTIADANITTLIAAIILFAVGNG 572

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            V+GFAIT+ + I+ SMFTAI   RA++  +   K++  + I
Sbjct: 573 PVKGFAITLAIGIITSMFTAIVGTRAIVNSVWGGKRLSKLSI 614



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 41/240 (17%), Positives = 95/240 (39%), Gaps = 6/240 (2%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           + +  R    +LQ    +           +   ++      Q      +  +   ++   
Sbjct: 373 ESTGERDAEGNLQFNKKAEVVSVATIQSRLGSSFRITGVGPQEAQNLSLLLRAGALIAPI 432

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I     VGP + ++ I  G   +I   + +L+++ I ++  F L A   L  +I   +G
Sbjct: 433 QIVEERTVGPSLGQQNIDAGTQAIIWGLVLVLLFMVIYYR-KFGLVADMALAANIVLIIG 491

Query: 710 FFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             ++  G    L  +A ++  +G +V+  V++++R+R+ ++      S +  I    +  
Sbjct: 492 VMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIREEIRAKR---SPQQAIHHGYDSA 548

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL-FIYDWR 827
           L      ++   I+ + +   G   +  FAI +A GI+ +  ++I     I+       R
Sbjct: 549 LSTIADANITTLIAAIILFAVGNGPVKGFAITLAIGIITSMFTAIVGTRAIVNSVWGGKR 608



 Score = 42.8 bits (98), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +  L ALPN   +                          + +  D
Sbjct: 4   KYPLWKNLLVIFVILLAALYALPNIYGEDPA-----------------------VQISAD 40

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               V+       D +R  LK E I   S+   Q ++ +  +  + +    + +   L
Sbjct: 41  RQATVDA---ATLDLVRETLKSEDISPKSIALEQEQVLVRLSSDKEQLQAREALNKRL 95


>gi|262172185|ref|ZP_06039863.1| protein-export membrane protein SecF [Vibrio mimicus MB-451]
 gi|261893261|gb|EEY39247.1| protein-export membrane protein SecF [Vibrio mimicus MB-451]
          Length = 315

 Score =  226 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR   +   +S++    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKADKMIDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ LE+   GD + QNF   ++ +VRL+ +  D   +    +++           
Sbjct: 61  NLEQIRTALEAKGFGDATVQNFGSARDVMVRLRPRD-DMAGEALGNQILAAIEEGTGGNV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S + +L+Y+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         ++++ SI +TL
Sbjct: 180 IFSILQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GG++I  FA+ +  GI V   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297


>gi|95929297|ref|ZP_01312041.1| SecF protein [Desulfuromonas acetoxidans DSM 684]
 gi|95134795|gb|EAT16450.1| SecF protein [Desulfuromonas acetoxidans DSM 684]
          Length = 303

 Score =  226 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 160/297 (53%), Gaps = 2/297 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPV 589
             LI   I + F+  R     +SI+  +  I  L   G  NYG+DF GG  + V   +  
Sbjct: 1   MQLIKPDINVDFVGKRNMAFVLSIVLILIGIGSLIVKGGPNYGVDFAGGTLVQVRFEQNT 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               ++  L    + + + Q F  + N  +    +    +   R   +   +        
Sbjct: 61  TAGEIKKALIPNVLDNATVQQFGDDANEYLIRAQESDSGLQGLRSQILDALEPVYGAGTV 120

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E+VGP++ +EL ++G++ ++ + I +L YI  RF++ FA+GAI  L+ D+  TLG
Sbjct: 121 DMRRIEMVGPQVGQELRKQGLMAILYAMIGILAYITWRFEFRFAVGAIVALVHDVLLTLG 180

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+LFG E +L  +AA L +IGYS+ND ++VYDR+R+NM  Y         +++SINETL
Sbjct: 181 AFSLFGKEIDLPIIAAFLAIIGYSLNDTIIVYDRIRENMGKY-HGSGVPLTVNRSINETL 239

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            R++ TS    + VL + ++GG VI +FA  +  G++V   SSIF+A+PIL+   + 
Sbjct: 240 SRTILTSGTTLLVVLALFLFGGGVIHNFAFALLIGVLVGTYSSIFVASPILIAWQEK 296


>gi|77462342|ref|YP_351846.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides 2.4.1]
 gi|126461218|ref|YP_001042332.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides ATCC
           17029]
 gi|332560225|ref|ZP_08414547.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides WS8N]
 gi|77386760|gb|ABA77945.1| Protein-export membrane protein secD [Rhodobacter sphaeroides
           2.4.1]
 gi|126102882|gb|ABN75560.1| protein-export membrane protein SecD [Rhodobacter sphaeroides ATCC
           17029]
 gi|332277937|gb|EGJ23252.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides WS8N]
          Length = 554

 Score =  226 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 190/553 (34%), Positives = 309/553 (55%), Gaps = 32/553 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLP------------------------QSMLDRFP 36
           +    W  +L   IC + +L A PNF                           + +  +P
Sbjct: 2   LHFPVWKRVLIWGICALAILYAAPNFFYSRVESHNDAVAAIEKAGGTATPEQTAAVGLWP 61

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI-- 94
             +P N ++LGLDLRGG+HL+ EV  +D     +     E+R  L+     V S+R+   
Sbjct: 62  EWLPSNIVNLGLDLRGGAHLLAEVRVEDVYAARMDGLWPEVRDALRGLRDQVGSIRRQTA 121

Query: 95  -QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
              ++ ++ +     +   +      Q V S   +  + ++ +++    + I L+     
Sbjct: 122 PAGELRVAISRPEGMQAALEAARRLAQPVVSFTGMG-QNDIEISSQGDVLVIRLTDAEKT 180

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
            + S  ++QS+EIIR+R+D++G  E TIQR G  RILIQ+PG    + L+ L+GTTAK++
Sbjct: 181 AMDSRTVQQSLEIIRRRVDEVGTREPTIQRQGEDRILIQVPGIGSAAELKSLIGTTAKLT 240

Query: 214 FHKV---LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           FH V     +         V    +  G  Y+++    ++G  L  A  +FD    +P V
Sbjct: 241 FHPVLGRTADAQSSASGDLVLPAANEQGIFYVLDRSPVVTGEELVDAQPSFDQNN-RPAV 299

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
              F+  GAR F + T  NIGKP A+VLD  V++APVI   I  G   I+GNF++E +  
Sbjct: 300 SFRFNPSGARAFGDYTAQNIGKPFAIVLDNEVISAPVIQAHIAGGSGIITGNFSVEESTE 359

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +LRAG+LP ++  +EER +G +LG DSI  G  A + G++ +V FMI  YG +G++A
Sbjct: 360 LAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVAFMIASYGWFGVLA 419

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
           + ++ +N++  +ALLS++GATLTLP IAGIVL IG+AVD+N+L+ ERIREE R+ +    
Sbjct: 420 NIALAINMLAIIALLSVVGATLTLPGIAGIVLTIGVAVDANVLIYERIREELRQGKQPGR 479

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           ++++GF +A S I D+N+T  +  +++F  G G VRGFA+T+ + I  S+FTA+ + R +
Sbjct: 480 AIELGFEKALSAIVDANVTTFLVALIMFLVGAGPVRGFAVTLTIGIFTSVFTAVYVTRIL 539

Query: 511 MIFIIRYKKMKSI 523
           +     +++ ++I
Sbjct: 540 IATWFAWRRPRTI 552



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 89/208 (42%), Gaps = 4/208 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G+   +      V  +   +    T      +GP++ ++ I  G    I+  IA++ 
Sbjct: 347 IITGNFSVEESTELAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVA 406

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++   + W F + A   L +++   +   ++ G    L  +A ++  IG +V+  V++Y+
Sbjct: 407 FMIASYGW-FGVLANIALAINMLAIIALLSVVGATLTLPGIAGIVLTIGVAVDANVLIYE 465

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ ++           I+    + L   V  ++  F+  L M + G   +  FA+ + 
Sbjct: 466 RIREELRQ---GKQPGRAIELGFEKALSAIVDANVTTFLVALIMFLVGAGPVRGFAVTLT 522

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830
            GI  +  +++++   ++   + WR   
Sbjct: 523 IGIFTSVFTAVYVTRILIATWFAWRRPR 550


>gi|291613429|ref|YP_003523586.1| protein-export membrane protein SecD [Sideroxydans lithotrophicus
           ES-1]
 gi|291583541|gb|ADE11199.1| protein-export membrane protein SecD [Sideroxydans lithotrophicus
           ES-1]
          Length = 603

 Score =  226 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 183/510 (35%), Positives = 293/510 (57%), Gaps = 17/510 (3%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            +   N +P+S   ++ +++    + LGLDLRGG H +L++D    ++  L+  S ++RS
Sbjct: 99  YMVALNLVPRSP--QWMASLNALPMYLGLDLRGGVHFLLQIDMKAALDKALESDSGDIRS 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++  I    + +  + IT+ F D+  +    D++     G+    + D ++ L     
Sbjct: 157 SLREADIPYSGVSRDASAITIKFRDADARSKGEDELKQRFGGLEFNTSEDGREFL----- 211

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +   L Q    ++   A++Q++  +R R++++G++E  IQ+ G+ RI++QLPG QD 
Sbjct: 212 ---LLASLKQQEQIRIQESAVQQNLVTLRNRVNELGVAEPVIQQQGADRIVVQLPGVQDT 268

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF---MFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
           +R + +LG TA +    V   +         FG    +D DG   LV+  V ++G  +N 
Sbjct: 269 ARAKDILGRTATLEVRMVDDEHHLSAGGIAPFGTEIFKDRDGTPLLVKKSVILTGERIND 328

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAI 312
           A   FD + ++P V I+ D +GAR+F E TR+N+GK +         G V+TAPVI + I
Sbjct: 329 AQPGFDSRNNEPAVHINLDAVGARKFKEATRENVGKRMAIILFEKGKGEVVTAPVIREEI 388

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
             G+ QISG    E A   A +LRAG+L   + IVEER VG  LG+D+I +G  +   G 
Sbjct: 389 GGGRVQISGKMNTEEAKDTALLLRAGALAAPMEIVEERTVGPSLGADNIARGFHSTQIGF 448

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           + I +FMI  Y  +G V+  ++  N++L +ALLS+L ATLTLP +AGI L +G+A+DSN+
Sbjct: 449 IAIAIFMIAYYLMFGGVSVLALGANLLLLIALLSMLQATLTLPGMAGIALTLGMAIDSNV 508

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+NERIREE R       ++  G+  A++TI DSNIT LIA + LF FG G ++GFA+ +
Sbjct: 509 LINERIREELRNGVPPQMAIHAGYENAFATILDSNITTLIAGIALFMFGSGPIKGFAVVL 568

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            L IL SMF+A+ + RA++  I   K   +
Sbjct: 569 CLGILTSMFSAVLVSRALVNLIYGRKARLN 598



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 87/212 (41%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G    +      +  +   +     I     VGP +  + I +G     I  IA+ 
Sbjct: 393 VQISGKMNTEEAKDTALLLRAGALAAPMEIVEERTVGPSLGADNIARGFHSTQIGFIAIA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++   +   F   ++  L  ++   +   ++      L  +A +   +G +++  V++ 
Sbjct: 453 IFMIAYY-LMFGGVSVLALGANLLLLIALLSMLQATLTLPGMAGIALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I           + +++   I+ + + ++G   I  FA+ +
Sbjct: 512 ERIREELR---NGVPPQMAIHAGYENAFATILDSNITTLIAGIALFMFGSGPIKGFAVVL 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++ ++  ++  IY  +A+  ++
Sbjct: 569 CLGILTSMFSAVLVSRALVNLIYGRKARLNKV 600



 Score = 40.4 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 16/33 (48%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34
          R   W  +L  +   +GL+ ALPN   ++   +
Sbjct: 3  RYPLWKNLLIIVALMLGLVYALPNLYGEAPAVQ 35


>gi|309781305|ref|ZP_07676041.1| protein-export membrane protein SecD [Ralstonia sp. 5_7_47FAA]
 gi|308919718|gb|EFP65379.1| protein-export membrane protein SecD [Ralstonia sp. 5_7_47FAA]
          Length = 629

 Score =  226 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 166/515 (32%), Positives = 271/515 (52%), Gaps = 24/515 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL   P +L  +             + LGLDLRGG H +L+VD +  V   L   
Sbjct: 109 IVALNLLPGSPQWLSGAP-------FFAKPMFLGLDLRGGVHFLLQVDMNGAVTKKLDSL 161

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+ +GI    + +  N I++ F++    +     +    +        +    
Sbjct: 162 AGDIRTQLRDKGIRHSGIDRNNNTISIKFSNPDEADRARTLLADSTR--------ELAYT 213

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           +  +     ++   +   + +V  +A++Q++  +  R++++G++E  IQ+ G  RI++QL
Sbjct: 214 VDKSADGATLTGTFTAAAMKEVQDNAVKQNIVTLHNRVNELGVAEPVIQQQGPDRIVVQL 273

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +      PN            L D           L++ +V 
Sbjct: 274 PGVQDTAKAKDIIGRTATLEARLADPNAPLAPRPGDPVPLGDELFTQGRSAPVLLQKQVI 333

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +  A+A FD   +   VDI+ D  G R   +V+RDNIGK + +VL  +    +  
Sbjct: 334 FTGDRITSASAGFDQNHNS-SVDITLDGQGGRMLRDVSRDNIGKRMGIVLFEKGKGEVLT 392

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  + E A  LA +LRAGSL   + I+EER +G  LG+D+I KG 
Sbjct: 393 VATIQSELGSRFQITGMGSTEAASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 452

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            + + G + I +FM++ Y  +G  +  ++ +NV L +ALLS+L ATLTLP IA I L +G
Sbjct: 453 DSALYGFLAISVFMVLYYMLFGAFSVAALGVNVFLLIALLSMLQATLTLPGIAAIALALG 512

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NER+REE R   S   ++  GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 513 MAIDANVLINERVREELRSGASAQMAIAAGFDRAWATILDSNVTTLIAGLALIAFGSGPV 572

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFAI   L I  SMF+A+   R ++      KK 
Sbjct: 573 RGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKKK 607



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG    +   +A+ +++ + +   F   ++  L +++   +
Sbjct: 431 MEIIEERTIGPSLGADNIKKGFDSALYGFLAISVFMVLYY-MLFGAFSVAALGVNVFLLI 489

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++   +  S +  I    +  
Sbjct: 490 ALLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---SGASAQMAIAAGFDRA 546

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FAI    GI  +  S++F    ++   Y  + 
Sbjct: 547 WATILDSNVTTLIAGLALIAFGSGPVRGFAIVHCLGIGTSMFSAVFFNRGLVNLWYGRKK 606

Query: 829 K 829
           K
Sbjct: 607 K 607



 Score = 37.7 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34
          R   W  I+  +   IG L  LPNF  ++   +
Sbjct: 3  RYPLWKYIVILVALAIGFLYTLPNFFGEAPAVQ 35


>gi|323499864|ref|ZP_08104823.1| preprotein translocase subunit SecF [Vibrio sinaloensis DSM 21326]
 gi|323315105|gb|EGA68157.1| preprotein translocase subunit SecF [Vibrio sinaloensis DSM 21326]
          Length = 315

 Score =  226 bits (574), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 162/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SIL    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAEKTIDFMRWSKLAFVFSILMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R  LE+   GD + QNF   ++ +VRL+ +  D   +T   +++           
Sbjct: 61  NLEEIRGALEAKGFGDATVQNFGSARDVMVRLRPRD-DVAGETLGNQILSAIKDGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D+++ SI +TL
Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-ADIMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFTQGGALIHGFATALLLGITVGTYSSIYVASALALKLGITKE 297


>gi|29654448|ref|NP_820140.1| preprotein translocase subunit SecF [Coxiella burnetii RSA 493]
 gi|161830655|ref|YP_001597014.1| preprotein translocase subunit SecF [Coxiella burnetii RSA 331]
 gi|165919366|ref|ZP_02219452.1| protein-export membrane protein SecF [Coxiella burnetii RSA 334]
 gi|29541715|gb|AAO90654.1| protein translocase subunit [Coxiella burnetii RSA 493]
 gi|161762522|gb|ABX78164.1| protein-export membrane protein SecF [Coxiella burnetii RSA 331]
 gi|165916965|gb|EDR35569.1| protein-export membrane protein SecF [Coxiella burnetii RSA 334]
          Length = 304

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR R W    S +  + SI  L  +GLN G+DF GG Q+ V   +PVD
Sbjct: 1   MEFFKTNTKIPFMRQRKWAGIFSAIIFLASIITLAVNGLNLGLDFTGGTQVEVNFTKPVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +R NL          + +D     +    ++             +K+K+   +P   
Sbjct: 61  TNQIRKNLAEAGFPQAVVRVYDVRHISVRVAPHKELTQE-------ELKEKLMSAMPGGH 113

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I + + +GP++ ++L+  GI+ VI++ IA +IYI +RF+  FAL A   LI D    LG 
Sbjct: 114 IGSLDYIGPQVGKQLMTNGILAVIVALIATMIYIALRFEMRFALSAAIALIHDPVLILGI 173

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+ F IEFNL  +AAVLT+IGYS+ND +VVYDR+R+N +      +  +++D SIN+TL 
Sbjct: 174 FSFFHIEFNLIVLAAVLTVIGYSLNDTIVVYDRIRENFRKVRRG-TPTEIVDLSINQTLS 232

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS    I VL + ++GGS +  FA+ +  GIV+   SSI++A  + +     R 
Sbjct: 233 RTIMTSGLTLIVVLALFIFGGSTLRPFALALIIGIVIGTYSSIYVAGSLAVTFGLSRR 290


>gi|163857962|ref|YP_001632260.1| preprotein translocase subunit SecD [Bordetella petrii DSM 12804]
 gi|163261690|emb|CAP43992.1| secD [Bordetella petrii]
          Length = 626

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 178/516 (34%), Positives = 281/516 (54%), Gaps = 24/516 (4%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             + LL A P ++                + LGLDLRGG H +L+VD    +       +
Sbjct: 110 VALNLLPASPPWMRAL------GWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLA 163

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            ++R+ L+ E +    + +    +  +FA++  ++     +   L         D +   
Sbjct: 164 ADVRTTLRDEKVPSRGVERAGTSVLATFANTDDRDRAYTTLRTRL--------PDLQFTE 215

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
              +    +  +LS   + +V   A++Q++  +  RI+++G++E  IQ+ G+ RI++QLP
Sbjct: 216 SEDSGHPALVGMLSPAAVTRVQDSALKQNINTLHNRINELGVAEPVIQQQGADRIVVQLP 275

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248
           G QD ++ ++LLG TA +    V  + + +         FG+    D DG   LV  +V 
Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDSPAAQTALAGGTVPFGLERYTDRDGRPLLVRRQVI 335

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304
           ++G +L  A    D +T +  V ++ D  GAR F +VTRDN+GK +         G V+T
Sbjct: 336 LTGENLQDAQPGRDSQTQQAAVHLTLDSKGARIFRDVTRDNVGKRMAILLFENGKGEVVT 395

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           APVI   I  G+ QISG+ T E A   A +LRAG+L   ++I+EER +G  LG+D+I KG
Sbjct: 396 APVIRSEIAGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKG 455

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             + + G + I +F+I+ Y  +G+ +   + +NV+L LALLS+L ATLTLP IA I L +
Sbjct: 456 FHSTLYGFLAIAVFIILYYHLFGVFSTIGLSMNVLLLLALLSMLQATLTLPGIAAIALTL 515

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+A+DSN+L+NERIREE R   S   ++  GF RA+ TI DSN+T LI  + L  FG G 
Sbjct: 516 GMAIDSNVLINERIREELRNGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +RGFA+   L I+ SMF+++  VRA+       KK 
Sbjct: 576 IRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKK 611



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 86/213 (40%), Gaps = 4/213 (1%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G   A+      +  +   +    +I     +GP +  + I KG    +   +A+
Sbjct: 407 QVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFHSTLYGFLAI 466

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++I + +   F + +   L +++   L   ++      L  +AA+   +G +++  V++
Sbjct: 467 AVFIILYYHL-FGVFSTIGLSMNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLI 525

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
            +R+R+ ++      S +  I        G  + +++   I  L +  +G   I  FA+ 
Sbjct: 526 NERIREELR---NGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              GIV +  SS+     +    Y  + K ARI
Sbjct: 583 HCLGIVTSMFSSVVGVRALANLWYGRKKKLARI 615



 Score = 42.4 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 34/128 (26%), Gaps = 29/128 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I   +   IGLL  LPNF  +S                           ++V 
Sbjct: 3   RYPLWKYITVLVAVVIGLLYTLPNFYGESPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                        D ++  L    I   ++   QN     I   F  +  +    D +  
Sbjct: 38  SAKATIKVDNATLDRVQQILAAGNIQATNVYYEQNGTLGTIRARFPSTDVQLQARDLLDK 97

Query: 118 FLQGVNSK 125
            L  V   
Sbjct: 98  SLNTVADD 105


>gi|221638200|ref|YP_002524462.1| preprotein translocase subunit SecD [Rhodobacter sphaeroides KD131]
 gi|221158981|gb|ACL99960.1| Protein-export membrane protein SecD [Rhodobacter sphaeroides
           KD131]
          Length = 554

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 190/553 (34%), Positives = 310/553 (56%), Gaps = 32/553 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLP------------------------QSMLDRFP 36
           +    W  +L   IC + +L A PNF                           + +  +P
Sbjct: 2   LHFPVWKRVLIWGICALAILYAAPNFFYSRVESHNDAVAAIEKAGGTATPEQTAAVGLWP 61

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI-- 94
             +P N ++LGLDLRGG+HL+ EV  +D     +     E+R  L+     V S+R+   
Sbjct: 62  EWLPSNIVNLGLDLRGGAHLLAEVRVEDVYAARMDGLWPEVRDALRGLRDQVGSIRRQTA 121

Query: 95  -QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
              ++ ++ +     +   +      Q V S   +  + ++ +++    + I L++    
Sbjct: 122 PAGELRVAISRPEGMQAALEAARRLAQPVVSFTGMG-QNDIEISSQGDVLVIRLTEAEKT 180

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
            + S  ++QS+EIIR+R+D++G  E TIQR G  RILIQ+PG    + L+ L+GTTAK++
Sbjct: 181 AMDSRTVQQSLEIIRRRVDEVGTREPTIQRQGEDRILIQVPGIGSAAELKSLIGTTAKLT 240

Query: 214 FHKV---LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           FH V     +         V    +  G  Y+++    ++G  L  A  +FD    +P V
Sbjct: 241 FHPVLGRTADAQSSASGDLVLPAANEQGIFYVLDRSPVVTGEELVDAQPSFDQNN-RPAV 299

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
              F+  GAR F + T  NIGKP A+VLD  V++APVI   I  G   I+GNF++E +  
Sbjct: 300 SFRFNPSGARAFGDYTAQNIGKPFAIVLDNEVISAPVIQAHIAGGSGIITGNFSVEESTE 359

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +LRAG+LP ++  +EER +G +LG DSI  G  A + G++ +V FMI  YG +G++A
Sbjct: 360 LAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVAFMIASYGWFGVLA 419

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
           + ++ +N++  +ALLS++GATLTLP IAGIVL IG+AVD+N+L+ ERIREE R+ +    
Sbjct: 420 NIALAINMLAIIALLSVVGATLTLPGIAGIVLTIGVAVDANVLIYERIREELRQGKQPGR 479

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           ++++GF +A S I D+N+T  +  +++F  G G VRGFA+T+ + I  S+FTA+ + R +
Sbjct: 480 AIELGFEKALSAIVDANVTTFLVALIMFLVGAGPVRGFAVTLTIGIFTSVFTAVYVTRIL 539

Query: 511 MIFIIRYKKMKSI 523
           +     +++ ++I
Sbjct: 540 IATWFAWRRPRTI 552



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 89/208 (42%), Gaps = 4/208 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G+   +      V  +   +    T      +GP++ ++ I  G    I+  IA++ 
Sbjct: 347 IITGNFSVEESTELAVLLRAGALPAEMTFLEERTIGPELGQDSIDAGRTAAIVGMIAVVA 406

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++   + W F + A   L +++   +   ++ G    L  +A ++  IG +V+  V++Y+
Sbjct: 407 FMIASYGW-FGVLANIALAINMLAIIALLSVVGATLTLPGIAGIVLTIGVAVDANVLIYE 465

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ ++           I+    + L   V  ++  F+  L M + G   +  FA+ + 
Sbjct: 466 RIREELRQ---GKQPGRAIELGFEKALSAIVDANVTTFLVALIMFLVGAGPVRGFAVTLT 522

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830
            GI  +  +++++   ++   + WR   
Sbjct: 523 IGIFTSVFTAVYVTRILIATWFAWRRPR 550


>gi|154706130|ref|YP_001424599.1| preprotein translocase subunit SecF [Coxiella burnetii Dugway
           5J108-111]
 gi|154355416|gb|ABS76878.1| protein translocase subunit [Coxiella burnetii Dugway 5J108-111]
          Length = 304

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR R W    S +  + SI  L  +GLN G+DF GG Q+ V   +PVD
Sbjct: 1   MEFFKANTKIPFMRQRKWAGIFSAIIFLASIITLAVNGLNLGLDFTGGTQVEVNFTKPVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +R NL          + +D     +    ++             +K+K+   +P   
Sbjct: 61  TNQIRKNLAEAGFPQAVVRVYDVRHISVRVAPHKELTQE-------ELKEKLMSAMPGGH 113

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I + + +GP++ ++L+  GI+ VI++ IA +IYI +RF+  FAL A   LI D    LG 
Sbjct: 114 IGSLDYIGPQVGKQLMTNGILAVIVALIATMIYIALRFEMRFALSAAIALIHDPVLILGI 173

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+ F IEFNL  +AAVLT+IGYS+ND +VVYDR+R+N +      +  +++D SIN+TL 
Sbjct: 174 FSFFHIEFNLIVLAAVLTVIGYSLNDTIVVYDRIRENFRKVRRG-TPTEIVDLSINQTLS 232

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS    I VL + ++GGS +  FA+ +  GIV+   SSI++A  + +     R 
Sbjct: 233 RTIMTSGLTLIVVLALFIFGGSTLRPFALALIIGIVIGTYSSIYVAGSLAVTFGLSRR 290


>gi|294083975|ref|YP_003550732.1| preprotein translocase subunit SecF [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663547|gb|ADE38648.1| Preprotein translocase subunit SecF [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 311

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 119/300 (39%), Positives = 183/300 (61%), Gaps = 5/300 (1%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL-ANR 587
            R  L+P      F++ +   + +S    + SI +  T GLN GIDFKGGI L       
Sbjct: 1   MRLKLVPSDTNFDFLKLQKITMVLSTFLVLASIGMFATVGLNLGIDFKGGILLEARNMTG 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P D+S VR++L +L +GD+S Q F  E + L+R+Q Q GD  AQ   ++ V   +     
Sbjct: 61  PADISKVRNDLGTLNLGDVSLQGFGTETDVLIRIQRQEGDEKAQIAAIKAVTDML---GS 117

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I+ TE VGP +  EL  KGI+ V+ + +A+L+YIW RF+W F++ AI  L  D+  T
Sbjct: 118 DYDIRRTEFVGPTVGAELAEKGILAVMCALMAILVYIWFRFEWQFSIAAIVALAHDVLST 177

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G F+L   EFNL  VAA+LT+ GYS+ND VVV+DR+R+N++ Y  S   RD++++S+NE
Sbjct: 178 IGLFSLTSFEFNLATVAAILTIAGYSINDTVVVFDRVRENLRRY-KSYEQRDILNRSLNE 236

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R+V TS+   +++  + ++GG+V+  FA+ M +G+++   SS+FIA  +L      R
Sbjct: 237 TLSRTVMTSVTTLLALTAIVIFGGAVLRDFALAMIWGVIIGTYSSVFIAVGMLSRFDLKR 296


>gi|73542495|ref|YP_297015.1| preprotein translocase subunit SecD [Ralstonia eutropha JMP134]
 gi|72119908|gb|AAZ62171.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Ralstonia eutropha JMP134]
          Length = 621

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 163/515 (31%), Positives = 273/515 (53%), Gaps = 30/515 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL   P +L                + LGLDLRGG H +L+VD    V+  L   
Sbjct: 109 VVALNLLSGSPRWLTAMHA---------LPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ + +    + +  +K+T+ F ++         +   L+             
Sbjct: 160 AGDARTLLRDKNVRHGGIDRDGDKLTVRFNNADDANRARGILADNLRE------------ 207

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           L        +    ++     V   A++Q++  +  R++++G++E  IQ+ G+ RI++QL
Sbjct: 208 LAFAMDGNNVVGTFTEAARKAVQDAAVKQNITTLHNRVNELGVAEPVIQQQGADRIVVQL 267

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +      P+  +         FG       +G   +++ +V 
Sbjct: 268 PGVQDTAKAKDIIGRTATLEARLADPDAPRNPRAGDPVPFGSELFTQGNGAPVVLKKQVI 327

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +  A+A FD    +P V+I  D  G R   +V+R+NIGKP+ +VL  +    +  
Sbjct: 328 FTGDRIESASAGFDQNQ-RPSVNIKLDAQGGRVLRDVSRENIGKPMGIVLFEKGKGEVLT 386

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+      QI+G+++ E A  LA +LRAGSL   + I+EER +G  LG+D+I KG 
Sbjct: 387 VATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGF 446

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            ++  G   I +FM++ Y  +G+ +  ++ +N++L +A+LS+L ATLTLP IA I L +G
Sbjct: 447 DSVAYGFGAITVFMVLYYMLFGVFSVAALGINLLLLIAVLSMLQATLTLPGIAAIALVLG 506

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NERIREE R   S   ++ +GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 507 MAIDANVLINERIREELRAGASPQMAIAVGFERAWATILDSNVTTLIAGLALLAFGSGPV 566

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFA+   L IL SMF+A+   R ++      KK 
Sbjct: 567 RGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKK 601



 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG   V     A+ +++ + +   F + ++  L +++   +
Sbjct: 425 MEIIEERTIGPSLGADNIQKGFDSVAYGFGAITVFMVLYY-MLFGVFSVAALGINLLLLI 483

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+  ++G +++  V++ +R+R+ ++      S +  I       
Sbjct: 484 AVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRA---GASPQMAIAVGFERA 540

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FA+    GI+ +  S++F    ++   Y  + 
Sbjct: 541 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK 600

Query: 829 K 829
           K
Sbjct: 601 K 601



 Score = 42.0 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 40/120 (33%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG++  LPNF  ++   +  S              G + + +++ 
Sbjct: 3   RYPLWKYVVILVALAIGIIYTLPNFFGEAPAVQVSS--------------GKATVKVDLS 48

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   L        + L+ +G+    +      +   F  +  +    D ++  L  
Sbjct: 49  MQKHVEEILAQ------NQLQPDGVFF-DVSGQSGSVKARFRTTDDQLKAKDVLSRALNP 101


>gi|238021374|ref|ZP_04601800.1| hypothetical protein GCWU000324_01273 [Kingella oralis ATCC 51147]
 gi|237868354|gb|EEP69360.1| hypothetical protein GCWU000324_01273 [Kingella oralis ATCC 51147]
          Length = 614

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 168/505 (33%), Positives = 291/505 (57%), Gaps = 25/505 (4%)

Query: 29  QSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
           Q+ +   P  + K     + LGLDLRGG H  ++VD    +   L  Y+ ++R  ++++ 
Sbjct: 102 QNQIANSPEWLEKIGAKPMFLGLDLRGGVHFTMQVDMKAALEKTLDRYAGDIRRTMRQQD 161

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           I V  +R+ +N + + F D+   +    ++   L+G              +++   EI++
Sbjct: 162 IRVGGIRKQENSLVVPFQDAADMQKALPELQKMLEGAQ------------ISSNGNEITV 209

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            L    + Q+ S A++Q++  +  R++++G +E  IQ+ G+ RI++QLPG  D ++ + +
Sbjct: 210 ALPDALLAQIRSDAVKQNITTLHNRVNELGTAEPVIQQAGTDRIVVQLPGMTDTAKAKDI 269

Query: 206 LGTTAKMSFHKVLPNN------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           +G TA +    V  +              G   L D++G+Q+LV  +VE++G ++N A  
Sbjct: 270 IGRTATLEVRMVSSDMALYAQAQNGNIPDGYELLSDNEGHQFLVSKQVELTGENINQAQG 329

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSG 315
           + D +T  P+V ++ D  G+  F ++T  N GK +A+VL  +    V+TAP IN+ I  G
Sbjct: 330 SQDQQTKLPIVSLALDSSGSSTFADLTTANKGKIMAMVLIDQGKAEVVTAPRINEPITGG 389

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           + QI+G  ++  A  +A +LRAGSL   + I+EER +G  LG+++I KG  + V G V++
Sbjct: 390 RVQITGMASLAEANDVALLLRAGSLAAPMKIIEERTIGPSLGAENISKGIHSTVWGFVVV 449

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
            +FMIV Y  +G+ +  S+  N++   A+LS L ATLTLP IA + L +G+A+DSN+L+N
Sbjct: 450 TVFMIVYYRLFGIFSAISLSANLLFLFAILSALQATLTLPGIAAMALTLGMAIDSNVLIN 509

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERIR+E R+ +    ++  G+  A+ TI DSN+T+LIA + L  FG G VRGFAI   L 
Sbjct: 510 ERIRDELREGKKAQIAIKEGYDHAWDTILDSNLTSLIAGIALLIFGTGPVRGFAIVHCLG 569

Query: 496 ILISMFTAISIVRAMMIFIIRYKKM 520
           I+ S+++++ + RA++      +K 
Sbjct: 570 IMTSIYSSVVVSRALVNLWYGNRKK 594



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 84/201 (41%), Gaps = 4/201 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +     I     +GP +  E I KGI   +   + + +++ + +
Sbjct: 398 SLAEANDVALLLRAGSLAAPMKIIEERTIGPSLGAENISKGIHSTVWGFVVVTVFMIVYY 457

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +  F + +  +L  ++       +       L  +AA+   +G +++  V++ +R+R  +
Sbjct: 458 RL-FGIFSAISLSANLLFLFAILSALQATLTLPGIAAMALTLGMAIDSNVLINERIRDEL 516

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +    +   +  I +  +      + +++ + I+ + + ++G   +  FAI    GI+ +
Sbjct: 517 REGKKA---QIAIKEGYDHAWDTILDSNLTSLIAGIALLIFGTGPVRGFAIVHCLGIMTS 573

Query: 809 ASSSIFIAAPILLFIYDWRAK 829
             SS+ ++  ++   Y  R K
Sbjct: 574 IYSSVVVSRALVNLWYGNRKK 594


>gi|145299552|ref|YP_001142393.1| protein-export membrane protein SecF [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852324|gb|ABO90645.1| protein-export membrane protein SecF [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 315

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 162/299 (54%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR    GV  S L  + S+  LF  GLN+G+DF GG  + V   + V
Sbjct: 1   MFQILHFEKPIPFMRYAKPGVVFSALLMVISLFFLFDRGLNWGLDFTGGTTIEVGFQQSV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L  +   L+  +I   + Q+F   ++ L RL  + G  V Q      V      +   +
Sbjct: 61  SLDKIHEVLDEQKIEGATLQHFGSSRDVLFRLTPKEGVKVEQQ--GNEVLAAAKRLDQGA 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + ++ S I +LIY+ +RF+W  ALG I +L+ D+  TLG
Sbjct: 119 VLKRVEFVGPSVGDELATDGAMAMLASIICILIYVAVRFEWRLALGGIISLVHDVVITLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            FA F  EF+LT +AA++TL+GYS+ND +VV+DR+R+N +          ++D S+ ETL
Sbjct: 179 VFAYFQYEFDLTVLAALMTLVGYSLNDTIVVFDRLRENFRKVRKG-DTEYILDLSMTETL 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS   F+ VL + + GG +I  F++ M  G+     SSI++A+   +F+   R 
Sbjct: 238 SRTIITSGLTFVVVLALLLKGGPLIHGFSVAMVIGVAFGTYSSIYVASAFAMFLGVKRE 296


>gi|74318097|ref|YP_315837.1| preprotein translocase protein SecD [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057592|gb|AAZ98032.1| preprotein translocase protein SecD [Thiobacillus denitrificans
           ATCC 25259]
          Length = 604

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 170/515 (33%), Positives = 275/515 (53%), Gaps = 26/515 (5%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             + L+ A P +L                + LGLDLRGG H +LEVD    +      Y 
Sbjct: 101 VALNLVSASPAWLSTLNA---------LPMYLGLDLRGGVHFLLEVDMKAALEKAAVRYQ 151

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
           ++ R+ L+ + I    + +  N + + FA    ++  AD     L  V + L    +   
Sbjct: 152 NDFRTELRGDKIRYSRISREGNAVVVRFATRDQRDAAAD----KLAAVFTDLGFAAEDL- 206

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
                   ++  L      QV   A++Q++  +R R++++G++E  IQ+ G++R+++QLP
Sbjct: 207 ---DDGFLLTARLKPEAEKQVQEFALQQNITTLRNRVNELGVAEPVIQQQGANRVVVQLP 263

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSK-----KGFMFGVRFLRDSDGNQYLVEDKVEI 249
           G QD ++ + +LG TA +    V               FG   +   +G +  V+  V +
Sbjct: 264 GVQDTAKAKDILGRTATLEVRMVDEQADPLLVEQGQAPFGAEIVASREGGKIAVKKDVVL 323

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTA 305
           +G  +  A   FD  + +  V I+ D  GAR F +VTR+N+GK +            +TA
Sbjct: 324 TGDSITDAAPGFDSTSAQAAVHINLDGKGARIFKDVTRENVGKRMAILLIEKGIAEAITA 383

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           PVI + I  G+ QI+G  T + A  +A +LRAG+L   + IVEER VG  +G+++I KG 
Sbjct: 384 PVIREEIGGGRVQITGMETAQEASDVALLLRAGALAAPMQIVEERTVGPSMGAENIEKGF 443

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            + + G + +V FM + Y  +GL +  ++ +N    +ALLS+L ATLTLP +A I L +G
Sbjct: 444 HSNIWGFLAVVAFMTIYYRVFGLFSSVALAINGFFLIALLSMLQATLTLPGMAAIALTLG 503

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NERIREE R   +   ++  G+ RA+ TI DSN+T LIA + LF+ G G V
Sbjct: 504 MAIDANVLINERIREELRNGATPQAAIHAGYDRAWGTILDSNLTTLIAGIALFWLGSGPV 563

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFA+ + L IL SMF+A+++ RAM+      +  
Sbjct: 564 RGFAVVLCLGILTSMFSAVTVSRAMVNLTYGRQPR 598



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 90/212 (42%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G   AQ      +  +   +     I     VGP +  E I KG    I   +A++
Sbjct: 395 VQITGMETAQEASDVALLLRAGALAAPMQIVEERTVGPSMGAENIEKGFHSNIWGFLAVV 454

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ I ++  F L +   L ++    +   ++      L  +AA+   +G +++  V++ 
Sbjct: 455 AFMTIYYRV-FGLFSSVALAINGFFLIALLSMLQATLTLPGMAAIALTLGMAIDANVLIN 513

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      + +  I    +   G  + +++   I+ + +   G   +  FA+ +
Sbjct: 514 ERIREELR---NGATPQAAIHAGYDRAWGTILDSNLTTLIAGIALFWLGSGPVRGFAVVL 570

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++ ++  ++   Y  + + A++
Sbjct: 571 CLGILTSMFSAVTVSRAMVNLTYGRQPRLAKV 602



 Score = 38.1 bits (86), Expect = 6.5,   Method: Composition-based stats.
 Identities = 16/116 (13%), Positives = 29/116 (25%), Gaps = 25/116 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L  +   +  L  LPNF  +                            ++V 
Sbjct: 3   RYPLWKYLLIGVTLVVAFLYTLPNFFGEVPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                          + + LK   +    +    N I   FA +  +    D +  
Sbjct: 38  PVRTSETVDTALLGRVEALLKTASLPTSGVELAGNSIKARFASTDVQIKAKDVLQN 93


>gi|288940930|ref|YP_003443170.1| protein-export membrane protein SecD [Allochromatium vinosum DSM
           180]
 gi|288896302|gb|ADC62138.1| protein-export membrane protein SecD [Allochromatium vinosum DSM
           180]
          Length = 618

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 178/524 (33%), Positives = 294/524 (56%), Gaps = 32/524 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
               + L  +   +  N++SLGLDLRGG H+V++VD +  +   ++ YS +LR+ L+++ 
Sbjct: 103 LTQSADLPGWMRWLGLNQMSLGLDLRGGIHVVIDVDMEAAIEQAVERYSGDLRTLLREDK 162

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           I   ++ +    I + F D+  +E    K+    +        +        +    +  
Sbjct: 163 IRYLTLTRDGTNILIRFEDAASREAGEKKLKREFR--------ELDFQPSEESGAFVLRA 214

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            L +    ++   A++Q++  +R R++ +G++E +I R G  RI+++LPG QDP RL+ +
Sbjct: 215 GLPETEQQKIKDFALQQNITTLRNRVNALGVAEPSIARQGDRRIVVELPGAQDPGRLKDI 274

Query: 206 LGTTAKMSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + +  V    S           G +   + +G   L++ +V ++G  +  A+A 
Sbjct: 275 LGATATLEYRLVDTEGSVADAVAGRPPVGSKLYYERNGTPILLKRRVIVTGDQITDASAG 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP------- 313
           FD ++  P V ++ D  GARR  +VT +N+GKP+AVV      T  +++           
Sbjct: 335 FDSQSGSPAVFVNLDGQGARRMRDVTTENVGKPMAVVFIENRTTTQMVDGEPVKTTRKVE 394

Query: 314 ------------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         + Q +G  +   A   A +LR+G+L   + IVEER +G  LG D+I
Sbjct: 395 EVISVATIREPFGRRFQTTGLDSSNEAHDTALLLRSGALAAPIEIVEERTIGPSLGQDNI 454

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G  +++ GL L++LFM V Y  +GLVA+ ++ +N++LT+A+LS+L ATLTLP IAGIV
Sbjct: 455 DQGLESVMLGLGLVLLFMAVYYRVFGLVANLALVVNLVLTIAVLSMLQATLTLPGIAGIV 514

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+AVD+N+L+ ERIREE R   S   S+  G+ +A+STI D+N+T LIA VVLF FG
Sbjct: 515 LTIGMAVDANVLIYERIREEIRNGNSPQASIHAGYDKAFSTIVDANVTTLIAAVVLFSFG 574

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G V+GFA+T+ + I+ SMFTAI   RA++  I   +++  + I
Sbjct: 575 TGPVKGFAVTLFIGIVTSMFTAILGSRALINLIYGGRRLNKLAI 618



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 104/279 (37%), Gaps = 4/279 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S    +           +   +  G     V         +V               +  
Sbjct: 341 SPAVFVNLDGQGARRMRDVTTENVGKPMAVVFIENRTTTQMVDGEPVKTTRKVEEVISVA 400

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             +    R     G   +       +  +   +     I     +GP + ++ I +G+  
Sbjct: 401 TIREPFGRRFQTTGLDSSNEAHDTALLLRSGALAAPIEIVEERTIGPSLGQDNIDQGLES 460

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V++    +L+++ + ++  F L A   L++++  T+   ++      L  +A ++  IG 
Sbjct: 461 VMLGLGLVLLFMAVYYRV-FGLVANLALVVNLVLTIAVLSMLQATLTLPGIAGIVLTIGM 519

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +V+  V++Y+R+R+ ++      S +  I    ++     V  ++   I+ + +  +G  
Sbjct: 520 AVDANVLIYERIREEIR---NGNSPQASIHAGYDKAFSTIVDANVTTLIAAVVLFSFGTG 576

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  FA+ +  GIV +  ++I  +  ++  IY  R  N 
Sbjct: 577 PVKGFAVTLFIGIVTSMFTAILGSRALINLIYGGRRLNK 615


>gi|220935234|ref|YP_002514133.1| preprotein translocase subunit SecD [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996544|gb|ACL73146.1| preprotein translocase subunit SecD [Thioalkalivibrio sp. HL-EbGR7]
          Length = 623

 Score =  225 bits (573), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 178/526 (33%), Positives = 282/526 (53%), Gaps = 35/526 (6%)

Query: 25  NFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL 81
           N +  ++    P  +       +SLGLDLRGG H ++EVD    V    + Y  E RS L
Sbjct: 101 NVVALNLAPATPDWLRTFNARPMSLGLDLRGGVHFLMEVDMAAVVTASHERYVGEFRSLL 160

Query: 82  KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           + E I   S+ +    + + F D+  ++   D +    +G     +    +  L      
Sbjct: 161 RDERIRYLSVERASEGVVVRFRDAAERDQAGDFLRREYRGDLDFRSDQAGEVFL------ 214

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
            +   L+Q+ +      A++Q++  +R R++++G++E  IQ+ G  RI++QLPG QD +R
Sbjct: 215 -LIASLTQDTLTDQRRLALQQNITTLRNRVNELGVAEPIIQQQGEDRIVVQLPGVQDTAR 273

Query: 202 LRQLLGTTAKMSFHKVLPNNS------KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLN 255
            +++LG TA + F  V   N               R  R+ +GN  L+  +V ++G ++ 
Sbjct: 274 AKEILGATATLEFRLVDEENDPFEAAATGRVPSASRLYRERNGNPVLLRRQVMLTGDYIV 333

Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AV 296
            A +     +  P V I+ D  GAR F  VT +NIG+ +                     
Sbjct: 334 DAASGIAQDSGGPAVFINLDAQGARIFSRVTGENIGRLMGTVFIETKTETVEENGEMVRR 393

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +      Q     + QI+G  +   A  LA +LRAG+L   + IVEER VG  L
Sbjct: 394 TTRTEEVINVARIQDQLGRRFQITGLESTREARNLALLLRAGALAAPMTIVEERTVGPSL 453

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G D+I +G  ++V G +L+++FM + Y  +GLVA+ ++ LN++L +++LS+L ATLTLP 
Sbjct: 454 GRDNIERGFNSVVIGFILVLIFMALYYRVFGLVANVALALNLVLIVSVLSMLQATLTLPG 513

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL +G+AVD+N+L+ ERIREE R   S   ++  G+ RA+STI D+NIT LIA +V
Sbjct: 514 IAGIVLTVGMAVDANVLIFERIREELRNGNSPQAAIASGYDRAFSTIVDANITTLIAALV 573

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           LF FG G ++GFAIT+ + I+ISMFTAI + RA++  I   ++   
Sbjct: 574 LFMFGTGPIKGFAITLSIGIVISMFTAILVTRAIINLIYGRRRRIK 619



 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 105/257 (40%), Gaps = 4/257 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G +   V      +       +           N    ++ L R     G    +     
Sbjct: 369 GRLMGTVFIETKTETVEENGEMVRRTTRTEEVINVARIQDQLGRRFQITGLESTREARNL 428

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +   +    TI     VGP + R+ I +G   V+I  I +LI++ + ++  F L A
Sbjct: 429 ALLLRAGALAAPMTIVEERTVGPSLGRDNIERGFNSVVIGFILVLIFMALYYRV-FGLVA 487

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L++   +   ++      L  +A ++  +G +V+  V++++R+R+ ++      S
Sbjct: 488 NVALALNLVLIVSVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFERIREELR---NGNS 544

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +  I    +      V  ++   I+ L + ++G   I  FAI ++ GIV++  ++I + 
Sbjct: 545 PQAAIASGYDRAFSTIVDANITTLIAALVLFMFGTGPIKGFAITLSIGIVISMFTAILVT 604

Query: 817 APILLFIYDWRAKNARI 833
             I+  IY  R +   +
Sbjct: 605 RAIINLIYGRRRRIKAL 621



 Score = 42.4 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 25/123 (20%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  ++  +G L A+PN  P+    +  +                       +
Sbjct: 4   QYPLWKYLLIVVVVAVGALYAMPNLYPEDPAVQISNTTTD-------------------E 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D+     ++      R    K G+           + L F ++  +   AD +   L G
Sbjct: 45  VDEATRRQVEAVLAG-RGLNPKTGVEY-----DGQHVLLRFDNTDDQLQAADILRTALMG 98

Query: 122 VNS 124
             +
Sbjct: 99  TQN 101


>gi|332307524|ref|YP_004435375.1| protein-export membrane protein SecF [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174853|gb|AEE24107.1| protein-export membrane protein SecF [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 313

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 162/298 (54%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+     + FM  R      S +  I S+  L  + LN+G+DF GG Q+ +      +
Sbjct: 1   MQLLNMKNTVGFMSLRVPAAIFSAILVIGSLVSLGVNQLNWGLDFTGGTQIEMRYQSVAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L      + + QN+   ++ L+R+    G       + + V   +    P   
Sbjct: 61  LDEVRAELTQAGFIEPTVQNYGSSQDILIRIAPMEGVKNV--EIGDRVVAALQAADPSVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +    VGP I  EL  +G + +++S + +L+Y+ +RF+W FALG++  L  D+  TLG 
Sbjct: 119 KRGIAFVGPNIGDELAEQGGLAMLVSLLCILVYVAMRFEWRFALGSVVALAHDVIITLGL 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F++  +EF+LT +AAVL +IGYS+ND +VV DR+R+N +    S +  ++I+ S+ +TL 
Sbjct: 179 FSVLQLEFDLTVLAAVLAVIGYSLNDTIVVSDRIRENFRKIRNSET-EEIINISLTQTLN 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS+   + ++ +   GG+ I  FA  + FG+++   SSI++A+ + L++   R 
Sbjct: 238 RTIITSLTTILVLMSLFFLGGATIHGFATALLFGVIIGTYSSIYVASLVALWLGVSRE 295


>gi|212212458|ref|YP_002303394.1| preprotein translocase subunit SecF [Coxiella burnetii CbuG_Q212]
 gi|212010868|gb|ACJ18249.1| protein translocase subunit [Coxiella burnetii CbuG_Q212]
          Length = 304

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR R W    S +  + SI  L  +GLN G+DF GG Q+ V   +PVD
Sbjct: 1   MEFFKTNTKIPFMRQRKWAGIFSAIIFLASIITLAVNGLNLGLDFTGGTQVEVNFTKPVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +R NL          + +D     +    ++             +K+K+   +P   
Sbjct: 61  TNQIRKNLAEAGFPQAVVRVYDVRHISVRVAPHKELTQE-------ELKEKLMSAMPGGH 113

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I + + +GP++ ++L+  GI+ VI++ IA +IYI +RF+  FAL A   LI D    LG 
Sbjct: 114 IGSLDYIGPQVGKQLMTNGILAVIVALIATMIYIALRFEMRFALSAAIALIHDPVLILGI 173

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+ F IEFNL  +AAVLT+IGYS+ND +VVYDR+R+N +      +  +++D SIN+TL 
Sbjct: 174 FSFFHIEFNLIVLAAVLTVIGYSLNDTIVVYDRIRENFRKVRRG-TPTEIVDLSINQTLS 232

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS    I VL + ++GGS +  FA+ +  GIV+   SSI++A  + +     R 
Sbjct: 233 RTIMTSGLTLIVVLALFIFGGSTLRPFALALIIGIVIGTYSSIYVAGSLAVTFGLSRR 290


>gi|149194835|ref|ZP_01871929.1| protein export protein SecF [Caminibacter mediatlanticus TB-2]
 gi|149134994|gb|EDM23476.1| protein export protein SecF [Caminibacter mediatlanticus TB-2]
          Length = 323

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 100/285 (35%), Positives = 168/285 (58%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM  R   + ISI   I S+  +FT G N+GIDF GG+++ V   +P+ ++ +R  + 
Sbjct: 10  YDFMGKRKIFISISIFLIILSLFSIFTKGFNWGIDFAGGVEVQVRFEKPIKIATIREVIA 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                + +   F  ++ FL+RL  +  +S  +  +   +K  +++I     I+  +IVG 
Sbjct: 70  KK-YPNANITTFGSDREFLIRLNVKDVNSDVRKSLGSEIKNILSKIG-KVEIRRVDIVGA 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG+  +I + I +LIY+  RF+W FA+ ++  L  D   +LG  + F IE N
Sbjct: 128 KVGNELREKGLKALIFAIIGILIYVSFRFEWRFAVASVLALFHDTIISLGAVSAFNIEVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+LTL+GYS+ND +VV+DR+R+ +K  +       LI+ +I++TL R+V TS+  
Sbjct: 188 LDVLAAILTLMGYSLNDTIVVFDRIREEVKK-SNIKDLATLINVAISKTLSRTVLTSLTT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           F  VL + ++GG +I  F+  +  GI+V   SSIFIA+P+L+++ 
Sbjct: 247 FFVVLTLYLFGGEIIKPFSFTLLVGIIVGTYSSIFIASPLLIWLG 291


>gi|299768780|ref|YP_003730806.1| preprotein translocase subunit SecD [Acinetobacter sp. DR1]
 gi|298698868|gb|ADI89433.1| preprotein translocase subunit SecD [Acinetobacter sp. DR1]
          Length = 633

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 158/535 (29%), Positives = 275/535 (51%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  V   ++  + +LR   ++  I
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAVAQRMETSATDLRRQFRENKI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++    N IT+ FAD+  ++   D +                +  L ++T   + + 
Sbjct: 163 KFNNLALTNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASSTGSTLKLT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ S+A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V  +N                        +     G Q L++    ++G 
Sbjct: 275 GRTANLEFRLVSDSNDQYIDPYTGKYNGQPLPPGTEVFAYESLDSGRQLLLQRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   +    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKITYVTDPK 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QA+     +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I KG  +   G +L+ ++M+V +  +GL+A+F++ +N+ + L ++S 
Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVVNLAMILTVMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE     S   ++  G+ RAY+TIFDSN
Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   ++   
Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQIIYGKRRNLK 629



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 D              +    N    +  L       G S  Q      +  +  
Sbjct: 386 KITYVTDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAG 445

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +          +VGP + +E I KG++   I  + + I++ + F+  F L A   L+++
Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVVN 504

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L   +  G    L  +A ++  IG +V+  V++ +R+R+ M       S +  I  
Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVA 561

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +        +++  F+    +   G   I  FA+ +  GIV +  ++I +   I+  I
Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQII 621

Query: 824 YDWRAKNARI 833
           Y  R    ++
Sbjct: 622 YGKRRNLKKL 631


>gi|254506706|ref|ZP_05118846.1| protein-export membrane protein SecF [Vibrio parahaemolyticus 16]
 gi|219550287|gb|EED27272.1| protein-export membrane protein SecF [Vibrio parahaemolyticus 16]
          Length = 315

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 163/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SIL    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAENTIDFMRWSKLAFVFSILMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +RS LE+   GD + QNF   ++ +VRL+ +  D   +T   +++           
Sbjct: 61  NLEDIRSALEAKGFGDATVQNFGSARDVMVRLRPRD-DVAGETLGNQILNAIKDGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D+++ SI +TL
Sbjct: 180 IFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-ADIMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGITKE 297


>gi|258626961|ref|ZP_05721763.1| protein export protein SecF [Vibrio mimicus VM603]
 gi|258580785|gb|EEW05732.1| protein export protein SecF [Vibrio mimicus VM603]
          Length = 306

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 95/289 (32%), Positives = 162/289 (56%), Gaps = 2/289 (0%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FMR   +   +S++    SI  L T  LN+G+DF GG  + V   +P +L  +R+ LE
Sbjct: 2   IDFMRWSKFAFALSLVMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPANLEQIRTALE 61

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +   GD + QNF   ++ +VRL+ +  D   +    +++            ++  E VGP
Sbjct: 62  AKGFGDATVQNFGSARDVMVRLRPRD-DMAGEALGNQILAAIKEGTGGNVEVRRIEFVGP 120

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            +  EL   G + +++S + +L+Y+ +RF+W  A GA+  L  D+  TLG F++  IE +
Sbjct: 121 NVGDELTEAGGLAILVSLLCILLYVSVRFEWRLAAGAVLALAHDVIITLGIFSILQIEVD 180

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT VAA+LT++GYS+ND +VV+DR+R+N +         ++++ SI +TL R++ TS   
Sbjct: 181 LTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKEEP-AEIMNSSITQTLSRTLITSGTT 239

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              V+ +   GG++I  FA+ +  GI V   SSI++A+ + L +   R 
Sbjct: 240 LFVVIALFTQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 288


>gi|238650647|ref|YP_002916499.1| preprotein translocase subunit SecD [Rickettsia peacockii str.
           Rustic]
 gi|238624745|gb|ACR47451.1| preprotein translocase subunit SecD [Rickettsia peacockii str.
           Rustic]
          Length = 518

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 193/532 (36%), Positives = 316/532 (59%), Gaps = 26/532 (4%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N   W + L  +     ++ ALPNF+  +        +P + ++LGLDLRGG+HL+L+
Sbjct: 1   MQNLPKWKIFLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLD 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           VD D ++N  ++  +D LR   +++ IG  ++   QN I L        + +   +    
Sbjct: 56  VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEKLKPLKKIINK-- 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         ++    E +I +  S++ ++ +++  ++QS+EI+R R+D  G  E 
Sbjct: 114 ----------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233
           T+Q+ G   IL+Q+PGE++PS L+ +LG TAK++FH V  N + +  + G   +      
Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223

Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
              +S G  Y+V  K  + G       +    +  + VV  SF+ +G++ F E+T++N G
Sbjct: 224 GDNESHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTG 283

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K LA+VLD ++L+AP IN AI  G+  I+GNFT+E+A  LA +L+AGSLP  L I+EER+
Sbjct: 284 KRLAIVLDNKLLSAPTINGAIMGGRGIITGNFTVESANELALLLQAGSLPAPLKIIEERS 343

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +G +LG+DSI  G  A + G + + +FM+  YG  GL A+ ++ L ++  LALLSL  AT
Sbjct: 344 IGPNLGADSIESGKKAELIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI D+N+T L
Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTL 463

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           I   +L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y K K +
Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515



 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  IA+ I++   +     L A   L L +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAELIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +      +S    I           +  
Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDA 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   +L+ I+    K  ++
Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITK-LLIDIWVQYFKPKKL 515


>gi|77165812|ref|YP_344337.1| preprotein translocase subunit SecF [Nitrosococcus oceani ATCC
           19707]
 gi|254434816|ref|ZP_05048324.1| protein-export membrane protein SecF [Nitrosococcus oceani AFC27]
 gi|76884126|gb|ABA58807.1| protein translocase subunit secF [Nitrosococcus oceani ATCC 19707]
 gi|207091149|gb|EDZ68420.1| protein-export membrane protein SecF [Nitrosococcus oceani AFC27]
          Length = 312

 Score =  225 bits (572), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 102/294 (34%), Positives = 166/294 (56%), Gaps = 2/294 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+   + I FM  R      S+   + SI  L   GL++GIDF GG  L V   +PV+
Sbjct: 1   MKLLKKNLRIDFMGKRRLAFAFSLALLLISISSLIFQGLSFGIDFTGGTLLEVGYEQPVE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           LS VR NLE    G    Q+F   ++ L+RL     +  +     E++          +T
Sbjct: 61  LSDVRQNLEEAGFGGAIVQHFGTTRDVLIRLA-PEAERSSAEVSEEILATLQKSRDNPAT 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGPK+ ++L  +G + V+ + I +LIY+ +RF++  A+G++  LI D+   LG 
Sbjct: 120 MRRVEFVGPKVGKDLTEQGGLAVLYALIGILIYVALRFEYRLAIGSVVALIHDVIIVLGL 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+L   EF+LT +AA+L +IGYS+ND +VV DR+R+N +      + + +I+ SIN+TL 
Sbjct: 180 FSLLHFEFDLTVLAAILAVIGYSLNDTIVVSDRIRENFRKIRKG-TAKQIINTSINQTLS 238

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+   + +  + ++GG  I SF+  +  GIVV   SSI++A P+ L + 
Sbjct: 239 RTIMTSLTTLLVLFALFLFGGETIHSFSTALIAGIVVGTYSSIYVATPMALALG 292


>gi|144899893|emb|CAM76757.1| Protein-export membrane protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 522

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 198/535 (37%), Positives = 309/535 (57%), Gaps = 26/535 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   W + L  ++   G + A PN L +   D+ PS      +SLGLDL+GGS+L+LEV
Sbjct: 2   LQFPKWKIALVLLVALWGGIWATPNLLSRDTTDQMPSWW--QPVSLGLDLQGGSYLLLEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
           D        L    + LR+ L+KE +    +     + + +  +D              +
Sbjct: 60  DTAYVKREHLSAMVETLRATLRKEKVRYSELGISGLDSVKVRISDEAE--------RERV 111

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           +    KL+ + +            +       + + I+ A++QS+ I+R+R+D++G  E 
Sbjct: 112 RPELRKLDPEAQ---FEAGEGGLFTFTYPTPVMAKRINQAVDQSIGIVRRRVDELGTREP 168

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF------- 232
           +IQR G  RI++QLPG ++P  ++ LLG TAK++FH V    +    + G          
Sbjct: 169 SIQRQGVDRIIVQLPGVKNPEHIKSLLGKTAKLTFHLVDDTTTPDEAVRGRVPSGSMLLP 228

Query: 233 ---LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                    + Y+V+ +VE+ G  L  A   F     +PVV   F   G +RF + T   
Sbjct: 229 SVEQERGMPSHYVVKKRVEVGGDMLTDAQPTFRDG--RPVVSFRFSVAGGKRFADTTSAA 286

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
            GK LA+VLD +V++AP IN+ I  G  +ISG+F+++ A  LA +LRAG+LP  L ++EE
Sbjct: 287 SGKLLAIVLDDKVISAPRINEPILGGAGEISGSFSVQGAQDLALLLRAGALPAPLVVLEE 346

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG DLG+DSI  G  A   GL+L+V+FM+V+YG  G +A+ ++ LN+++ LAL+S+LG
Sbjct: 347 RTVGPDLGADSIQAGAVASGVGLLLVVVFMVVIYGTLGALANVALVLNLVILLALMSVLG 406

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP IAGIVL +G+AVD+N+L+ ER+REE R  +S+  ++ + F RA+ TI D+N+T
Sbjct: 407 ATLTLPGIAGIVLTMGMAVDANVLIYERMREEQRSGRSIISTIQVSFERAFGTILDANLT 466

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            L A  +LF FG G VRGFA+T+ L +L SMFTAI + R M+   +R ++ K++ 
Sbjct: 467 TLAAAALLFQFGSGPVRGFAVTLSLGLLTSMFTAIMVTRLMVATWVRLRRPKTLP 521



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 59/140 (42%), Gaps = 3/140 (2%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                A   L+L++   L   ++ G    L  +A ++  +G +V+  V++Y+RMR+  + 
Sbjct: 382 TLGALANVALVLNLVILLALMSVLGATLTLPGIAGIVLTMGMAVDANVLIYERMREEQR- 440

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
             +  S    I  S     G  +  ++    +   +  +G   +  FA+ ++ G++ +  
Sbjct: 441 --SGRSIISTIQVSFERAFGTILDANLTTLAAAALLFQFGSGPVRGFAVTLSLGLLTSMF 498

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           ++I +   ++      R   
Sbjct: 499 TAIMVTRLMVATWVRLRRPK 518


>gi|262066709|ref|ZP_06026321.1| export membrane protein SecF [Fusobacterium periodonticum ATCC
           33693]
 gi|291379508|gb|EFE87026.1| export membrane protein SecF [Fusobacterium periodonticum ATCC
           33693]
          Length = 318

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 87/296 (29%), Positives = 156/296 (52%), Gaps = 2/296 (0%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSVV 594
             + +  +R   + + +SI+  + SI + F  GLNYGIDF GG    +   ++ + L+ +
Sbjct: 1   MKVNLHIIRNIKYYLSVSIVLVVLSIVVFFAKGLNYGIDFTGGNLFQLKYNDKKITLTEI 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             NL+ L        +   +                +    + V   + E+   +     
Sbjct: 61  NDNLDKLSEKLPQVNSNSRKVQISEDGTIILRVPELKEEDKKEVLNSLQELGAFNL-DKE 119

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           + VG  I  +L +  I  + I AI +++YI +RF++ FA+G I +L+ DI   +GF AL 
Sbjct: 120 DKVGASIGDDLKKSAIYSLGIGAILIVLYITLRFEFSFAIGGILSLLHDIIIAVGFIALM 179

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G E +   +AA+LT++GYS+ND +V+YDR+R+N+K      +  + +D+S+N+T  RS+ 
Sbjct: 180 GYEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEECMDESVNQTAIRSLN 239

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           TS+    SV+ + ++GG+ + +F + +  GI+    SSIFIA PI+  +   +  N
Sbjct: 240 TSITTLFSVIALLIFGGASLKTFIMTLLIGILAGTYSSIFIATPIVYLLNKRKGNN 295


>gi|332525403|ref|ZP_08401563.1| preprotein translocase subunit SecD [Rubrivivax benzoatilyticus
           JA2]
 gi|332108672|gb|EGJ09896.1| preprotein translocase subunit SecD [Rubrivivax benzoatilyticus
           JA2]
          Length = 634

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 164/514 (31%), Positives = 278/514 (54%), Gaps = 20/514 (3%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            +   N + +S   ++ + +    + LGLDLRGG H +++VD    +    +  + ++R+
Sbjct: 104 WVVALNLVSRSP--QWMARVHALPMYLGLDLRGGVHFLMQVDMKAALTKKAEAVTGDVRT 161

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+ + I    + +  N + + F ++   E   + +T  LQ +      D   ++     
Sbjct: 162 LLRDKNIRHAGITREGNNVEVRFREAALAEQARNLLTDQLQDMTWTPTADAGGDV----- 216

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             ++   L      +V   A++Q++  +  R++++G++E  IQ+ G  R+++QLPG QD 
Sbjct: 217 --KLVGTLKPQAATRVQEQALKQNISTLNNRVNELGVAEPVIQQQGLDRVVVQLPGVQDT 274

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD-------GNQYLVEDKVEISGI 252
           ++ + ++G TA +    V         + G   +           G   +V   V ++G 
Sbjct: 275 AKAKDIIGRTATLEIRLVNETQEAVDAVRGAGPVPFGSERFLERGGQPVIVYRNVVLTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308
           +L  A   FD +T++P V+++ D  GAR F +VTR+N+GK +         G V+TAPVI
Sbjct: 335 NLTDAQPGFDGQTNEPTVNLTLDARGARIFKDVTRENVGKRMAILLFEKGKGEVVTAPVI 394

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I  G+ QISG  T E A   A +LRAGSL   + I+EER +G  LG+++I KG  ++
Sbjct: 395 RTEIGGGRVQISGRMTTEEASDQALLLRAGSLAAPMEIIEERAIGPSLGAENIAKGFNSV 454

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
           + G V I +FM   Y  +G+ +  ++  N+++ +A+LS+L ATL+LP IA I L +G+A+
Sbjct: 455 LWGFVAIAVFMCAYYMLFGVFSTLALGFNLLMLIAVLSMLQATLSLPGIAAIALVLGMAI 514

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D+N+L+NER+REE R   S   ++  G+ RA+ TI DSN+T LIA + L  FG G VRGF
Sbjct: 515 DANVLINERVREELRHGASPQVAISAGYERAWGTILDSNVTTLIAGLALLAFGSGPVRGF 574

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           A+   L IL SMF+A+   R ++      +K   
Sbjct: 575 AVVHCLGILTSMFSAVMFSRGLVNLWYGRQKKLK 608



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 87/212 (41%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G    +    + +  +   +     I     +GP +  E I KG   V+   +A+ 
Sbjct: 403 VQISGRMTTEEASDQALLLRAGSLAAPMEIIEERAIGPSLGAENIAKGFNSVLWGFVAIA 462

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++   +   F + +   L  ++   +   ++     +L  +AA+  ++G +++  V++ 
Sbjct: 463 VFMCAYY-MLFGVFSTLALGFNLLMLIAVLSMLQATLSLPGIAAIALVLGMAIDANVLIN 521

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      S +  I        G  + +++   I+ L +  +G   +  FA+  
Sbjct: 522 ERVREELR---HGASPQVAISAGYERAWGTILDSNVTTLIAGLALLAFGSGPVRGFAVVH 578

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++  +  ++   Y  + K   +
Sbjct: 579 CLGILTSMFSAVMFSRGLVNLWYGRQKKLKSV 610


>gi|197283992|ref|YP_002149864.1| preprotein translocase subunit SecF [Proteus mirabilis HI4320]
 gi|227358139|ref|ZP_03842480.1| preprotein translocase subunit SecF [Proteus mirabilis ATCC 29906]
 gi|194681479|emb|CAR40323.1| protein-export membrane protein SecF [Proteus mirabilis HI4320]
 gi|227161475|gb|EEI46512.1| preprotein translocase subunit SecF [Proteus mirabilis ATCC 29906]
          Length = 337

 Score =  224 bits (571), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 169/310 (54%), Gaps = 2/310 (0%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
             + +     +   L      I FMR       IS L  + SI ++   G N+G+DF GG
Sbjct: 11  FKEHVVAQDYTVEQLNHGRKVIDFMRWDNVAFTISFLLLVASIAIISVKGFNWGLDFTGG 70

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             + +  ++P DL  +R +L +    D   QNF   ++ +VR+    G    Q    +++
Sbjct: 71  TVIEINLSQPADLDKMRDSLAAAGYKDPLLQNFGSSRDIMVRMPPVEG-QAGQELGKKVI 129

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
                EI   +T++  E VGP +  EL + G + ++ + I +LIY+  RF+W  ALGA+ 
Sbjct: 130 DIINVEIDNDATVKRIEFVGPSVGSELAQTGAMALLSALICILIYVGFRFEWRLALGAVI 189

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  D+  TLG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +      S+ 
Sbjct: 190 SLAHDVVITLGILSLFQIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY- 248

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           ++++ S+ +TL R++ TS    + VL + ++GGS++  F++ M  G+     SSI++A+ 
Sbjct: 249 EIMNVSLTQTLSRTIMTSATTLLVVLMLYIFGGSMLKGFSLVMLIGVSFGTVSSIYVASA 308

Query: 819 ILLFIYDWRA 828
           + L +   R 
Sbjct: 309 LALKMGMKRE 318


>gi|157964725|ref|YP_001499549.1| preprotein translocase subunit SecD [Rickettsia massiliae MTU5]
 gi|157844501|gb|ABV85002.1| Protein-export membrane protein secD [Rickettsia massiliae MTU5]
          Length = 518

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 194/532 (36%), Positives = 315/532 (59%), Gaps = 26/532 (4%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N   W ++L  +     ++ ALPNF+  +        +P + ++LGLDLRGG+HL+L+
Sbjct: 1   MQNLPKWKIVLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLD 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           VD D ++N  ++  +D LR   +++ IG  ++   QN I L        + +   +    
Sbjct: 56  VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEKLKPLKKIINK-- 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         ++      +I +  S++ ++ +++  ++QS+EI+R R+D  G  E 
Sbjct: 114 ----------IDPEIIAEVNANKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233
           T+Q+ G   IL+Q+PGE++PS L+ +LG TAK++FH V  N + +  + G   +      
Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223

Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
              +S G  Y+V  K  + G       +    +  + VV  SF+ +G++ F E+T++N G
Sbjct: 224 GDSESHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTG 283

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K LA+VLD ++L+AP IN AI  G   I+GNFTIE+A  LA +LRAGSLP  L I+EER+
Sbjct: 284 KRLAIVLDNKLLSAPTINGAIMGGSGIITGNFTIESANELALLLRAGSLPAPLKIIEERS 343

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +G +LG+DSI  G  A + G + + +FM+  YG  GL A+ ++ L ++  LALLSL  AT
Sbjct: 344 IGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI D+N+T L
Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGISNLYAIRTGFESAFATILDANLTTL 463

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           I   +L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y K K +
Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFKPKKL 515



 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  IA+ I++   +     L A   L L +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +      IS    I           +  
Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGISNLYAIRTGFESAFATILDA 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   +L+ I+    K  ++
Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVKYFKPKKL 515


>gi|319764883|ref|YP_004128820.1| protein-export membrane protein secd [Alicycliphilus denitrificans
           BC]
 gi|330827088|ref|YP_004390391.1| protein-export membrane protein SecD [Alicycliphilus denitrificans
           K601]
 gi|317119444|gb|ADV01933.1| protein-export membrane protein SecD [Alicycliphilus denitrificans
           BC]
 gi|329312460|gb|AEB86875.1| protein-export membrane protein SecD [Alicycliphilus denitrificans
           K601]
          Length = 631

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 169/514 (32%), Positives = 273/514 (53%), Gaps = 24/514 (4%)

Query: 24  PNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF 80
           P  +  +++ R P  +       + LGLDLRGG H +L+VD    +    + Y+ +LR+ 
Sbjct: 103 PYIVALNLVSRSPDWLTAINARPMYLGLDLRGGVHFMLQVDMQAAITKKAESYAGDLRTA 162

Query: 81  LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-QGVNSKLNVDPKKNLLVTTT 139
           L+++ I    + +    + +   D        + V       V +               
Sbjct: 163 LREKNIRHGGISRDGQAVDIRVRDEATATAARNLVADQFPDLVVASSPDG---------E 213

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +   +    + +V   A++Q+M  +  RI+++G++E  IQ+ G  RI++QLPG QD 
Sbjct: 214 GLRLRATIKPEALRKVQEQALKQNMVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDT 273

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGI 252
           ++ + +LG TA +    V      +    G   +        D +G   +V+ +V ++G 
Sbjct: 274 AKAKDILGRTATLEVRMVDEGTEARAAEMGTGPVPFGDEKYLDRNGQAVIVKKQVILTGE 333

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308
           +L  A   FD +T +P V+++ D  G+R F +VTR+NIGK +         G V+TAPVI
Sbjct: 334 NLTDAQPGFDGQTQEPTVNLTLDAKGSRIFKDVTRENIGKRMAIVLFEKGKGEVVTAPVI 393

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I  G+ QISG  T   A   A +LRAGSL   + I+EE  +G  LG+D+I +G  ++
Sbjct: 394 RSEIGGGRVQISGRMTTTEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIARGIHSV 453

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
           V G+  I  FM V Y  +G+ +  ++ +NV++ +A+LS+L ATLTLP IA + L +G+A+
Sbjct: 454 VWGMAAIAAFMCVYYVLFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAI 513

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           DSN+L+NERIREE R   +   ++  G+ RA++TI DSN+T LIA + L  FG G VRGF
Sbjct: 514 DSNVLINERIREELRAGVAPQAAIAAGYERAWATILDSNVTTLIAGLALLAFGTGPVRGF 573

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           A+   + IL SMF+A+   R ++      KK   
Sbjct: 574 AVVHCIGILTSMFSAVFFSRGLVNLWYGRKKKLK 607



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 85/212 (40%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I +GI  V+    A+ 
Sbjct: 402 VQISGRMTTTEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIARGIHSVVWGMAAIA 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + +   F + +   L +++   +   ++      L  +AA+   +G +++  V++ 
Sbjct: 462 AFMCVYY-VLFGVFSTIALSVNVLMLIAVLSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     ++ +  I           + +++   I+ L +  +G   +  FA+  
Sbjct: 521 ERIREELRA---GVAPQAAIAAGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++F +  ++   Y  + K   +
Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGRKKKLKSV 609



 Score = 42.8 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 37/139 (26%), Gaps = 25/139 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   IG L  LPNF  ++   +                   S     + 
Sbjct: 3   RYPVWKYAILVIALLIGALYTLPNFFGEAPAVQV------------------SSAKATIK 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D  +   ++             G+   S+    + +   F     +    D +   L  
Sbjct: 45  VDGALQRRVEEVLQSA-------GVSPDSVVFDGHSVRARFDTPDNQLKAKDAIEKALVP 97

Query: 122 VNSKLNVDPKKNLLVTTTE 140
             S        NL+  + +
Sbjct: 98  DPSDPPYIVALNLVSRSPD 116


>gi|121596289|ref|YP_988185.1| preprotein translocase subunit SecD [Acidovorax sp. JS42]
 gi|120608369|gb|ABM44109.1| protein-export membrane protein SecD [Acidovorax sp. JS42]
          Length = 632

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 168/530 (31%), Positives = 275/530 (51%), Gaps = 22/530 (4%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++ R P  +       + LGLDLRGG H +L+VD    +   ++ Y+ +LRS L+++ I
Sbjct: 109 NLVSRSPDWLTALHARPMYLGLDLRGGVHFMLQVDMQAAITKKIESYAGDLRSALREKNI 168

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +    + +   D        + +             D             +   
Sbjct: 169 RHGGIGREGQAVDIRVRDEATLTAARNLIADQF--------PDLAVVSSADGDGMRLRAT 220

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    + +V   A++Q+M  +  RI+++G++E  IQ+ G  RI++QLPG QD ++ + +L
Sbjct: 221 IKPEALRKVQEQALKQNMVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDIL 280

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGIHLNGATA 259
           G TA +    V      +    G   +        D +G   +V+ +V ++G +L  A  
Sbjct: 281 GRTATLEVRMVDEGTEARAAEMGTGPVPFGAEKYLDRNGQAVIVKKQVVLTGENLTDAQP 340

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSG 315
            FD +T +P V+++ D  G+R F ++TR+N+GK +         G V+TAPVI   I  G
Sbjct: 341 GFDGQTQEPTVNLTLDAKGSRIFKDITRENVGKRMAIVLFEKGKGEVVTAPVIRSEIGGG 400

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           + QISG  T   A   A +LRAGSL   + I+EE  +G  LG+D+I +G  ++V G+V I
Sbjct: 401 RVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIERGIQSVVWGMVAI 460

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
             FM V Y  +G+ +  ++ +NV+L +A+LS+L ATLTLP IA + L +G+A+DSN+L+N
Sbjct: 461 AAFMCVYYRLFGVFSTIALGVNVLLLIAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERIREE R   +   ++  G+ RA++TI DSN+T LIA + L  FG G VRGFA+   + 
Sbjct: 521 ERIREELRAGVAPQAAIATGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVHCIG 580

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           IL SMF+A+   R ++      KK                +  ++     
Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGRKKKLKSVSIGQVWKPEGDEHRSVAARGN 630



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 87/212 (41%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I +GI  V+   +A+ 
Sbjct: 402 VQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIERGIQSVVWGMVAIA 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++  F + +   L +++   +   ++      L  +AA+   +G +++  V++ 
Sbjct: 462 AFMCVYYRL-FGVFSTIALGVNVLLLIAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     ++ +  I           + +++   I+ L +  +G   +  FA+  
Sbjct: 521 ERIREELRA---GVAPQAAIATGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++F +  ++   Y  + K   +
Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGRKKKLKSV 609



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  ++  IG L  LPNF  ++                           ++V 
Sbjct: 3   RYPVWKYAILVIVLLIGALYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                          +   LK   +   S+    N +   F     +    D +   L
Sbjct: 38  SAKATLKVDAAVQQRVEDALKAANVASDSIVFDGNSVRARFDTPDNQLKAKDAIEKAL 95


>gi|260575194|ref|ZP_05843194.1| protein-export membrane protein SecF [Rhodobacter sp. SW2]
 gi|259022454|gb|EEW25750.1| protein-export membrane protein SecF [Rhodobacter sp. SW2]
          Length = 320

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 174/310 (56%), Gaps = 7/310 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L P+     F +  +   G S + ++ ++      GLN+GIDFKGG  +   +   
Sbjct: 1   MRLRLAPEHTNFDFFKHAYLTFGGSAVLTVLALVAWAVMGLNFGIDFKGGTTIRTESTMA 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD+   R  L    +GD+S                ++R+    G       V+  V+  +
Sbjct: 61  VDIGAYRDALAGQDLGDVSITEVFDPTFREDQHVAMIRIAPLEGYEAVTPEVINTVEAAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
               P  T  + E VG K+S ELI   I+ ++ +   +L+YIW+RF+W +A+GA+  L+ 
Sbjct: 121 NAHDPAMTFPSVESVGAKVSGELIWSAILAMVAATGCILVYIWLRFEWQYAVGAVAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           DI  T+G FA F I+F+LT +AA+LT++GYS+ND VVV+DR+R+N++ Y  +   RD+++
Sbjct: 181 DIFITIGVFAAFQIKFDLTIIAALLTILGYSINDTVVVFDRLRENLQKY-KTTPLRDVMN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            S+N+TL R++ TS    ++++ M ++GG VI  F   + FG+++   SS+F+A  I+LF
Sbjct: 240 ISVNQTLSRTLMTSFTTLLALIAMLIFGGDVIRGFTFAIFFGVILGTYSSVFVAKNIVLF 299

Query: 823 IYDWRAKNAR 832
           +   R++  +
Sbjct: 300 LGLDRSEKPK 309


>gi|260548781|ref|ZP_05823003.1| protein-export membrane protein SecD [Acinetobacter sp. RUH2624]
 gi|260407949|gb|EEX01420.1| protein-export membrane protein SecD [Acinetobacter sp. RUH2624]
          Length = 633

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 155/535 (28%), Positives = 272/535 (50%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  ++  ++  + +LR   ++  I
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++    N IT+ FAD+  ++   D +                +  L + T   + + 
Sbjct: 163 KFNNLALNNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASATGSTLKLT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ ++A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDVRRQEIQAYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V                            +     G Q L++    ++G 
Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYQSLDSGRQLLLQRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   +    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPK 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QA+     +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I KG  +   G +L+ ++M+V +  +GL+A+F++  N+ + L ++S 
Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRVFGLIANFALVFNLAMILTVMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE     S   ++  G+ RAY+TIFDSN
Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   ++   
Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQIIYGKRRNLK 629



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 92/245 (37%), Gaps = 4/245 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            D              +    N    +  L       G S  Q      +  +   +   
Sbjct: 391 TDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAP 450

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                  +VGP + +E I KG++   I  + + I++ + F+  F L A   L+ ++   L
Sbjct: 451 MYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRV-FGLIANFALVFNLAMIL 509

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              +  G    L  +A ++  IG +V+  V++ +R+R+ M       S +  I    +  
Sbjct: 510 TVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVAGYDRA 566

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +++  F+    +   G   I  FA+ +  GIV +  ++I +   I+  IY  R 
Sbjct: 567 YNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQIIYGKRR 626

Query: 829 KNARI 833
              ++
Sbjct: 627 NLKKL 631


>gi|238795568|ref|ZP_04639083.1| Protein-export membrane protein secF [Yersinia mollaretii ATCC
           43969]
 gi|238720687|gb|EEQ12488.1| Protein-export membrane protein secF [Yersinia mollaretii ATCC
           43969]
          Length = 322

 Score =  224 bits (571), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 165/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR      GIS+L  + SI ++ T G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRRVYDFMRWDNVAFGISLLLLVASIAVMSTKGFNWGLDFTGGTVIEINLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  LE         QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PADLDQLRDTLEKAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + ++++ + +LIY+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALLCILIYVGFRFEWRLALGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|300721777|ref|YP_003711055.1| preprotein translocase auxillary membrane protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628272|emb|CBJ88833.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Xenorhabdus nematophila ATCC 19061]
          Length = 322

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 166/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L      I FMR      GIS L  + SI  +   G N+G+DF GG  + +  ++
Sbjct: 5   YTVEQLNYGRRVIDFMRWDNVAFGISFLLLVASIVTMGVRGFNWGLDFTGGTVIEINLSK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R +L      D   QNF   ++ +VR+    G+   Q    +++      I  
Sbjct: 65  PADLDKMRDSLTQNGFSDALLQNFGSSRDVMVRMPPVAGN-AGQELGNKVISVINQHIDN 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  EL + G + ++++ I +LIY+  RF+W  ALGA+  L  D+  T
Sbjct: 124 DATVKRVEFVGPSVGSELAQTGAMALLVALICILIYVGFRFEWRLALGAVIALAHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +      S+ ++++ S+ +
Sbjct: 184 VGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG ++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLLVVLMLYIFGGEMLKGFSLAMLIGVTIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|260776668|ref|ZP_05885563.1| protein-export membrane protein SecF [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607891|gb|EEX34156.1| protein-export membrane protein SecF [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 315

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 165/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR   +   +SIL    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKADKLIDFMRWSKFAFVLSILMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL  +R+ LE+   GD + QNF   ++ +VRL+ + G    +T   +++           
Sbjct: 61  DLEEIRTALEAKGFGDATVQNFGSARDVMVRLRPRDG-VAGETLGNQILSAIKEGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +I+S I +LIY+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAIIVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         ++++ SI +TL
Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-AEIMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGITKE 297


>gi|307294961|ref|ZP_07574803.1| protein-export membrane protein SecD [Sphingobium chlorophenolicum
           L-1]
 gi|306879435|gb|EFN10653.1| protein-export membrane protein SecD [Sphingobium chlorophenolicum
           L-1]
          Length = 533

 Score =  224 bits (570), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 189/533 (35%), Positives = 305/533 (57%), Gaps = 15/533 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             W V    +   IG+  A+P+FLP  ++++ P  M + R++LGLDL GGSHL+LE    
Sbjct: 5   PRWAVAGILLPLLIGIFCAVPSFLPDRVVEQMPKFM-QTRVNLGLDLSGGSHLLLEASTQ 63

Query: 64  DFVNGFLQMYSDELRSFLK--KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           D     +    +++R+ L+     I +  +     K++    +    +   +++      
Sbjct: 64  DVAKQRIANMEEQVRTELRRGDTKIAIGDISSRDGKLSFMVRNPSEVDAAVERIR---PL 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                    +   +       I I  +Q  ID  +  A+E + E+IR+RID++G  E TI
Sbjct: 121 TQGAGLTGQRDFNVEVMNSSTIVITPTQAGIDNAVKGAMEVATEVIRKRIDEMGTREPTI 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233
           Q+ G++RI++Q+PG Q+P  L+ LLG TAK+ F  V  N +      G   +        
Sbjct: 181 QQQGANRIVVQVPGLQNPKALKDLLGQTAKLEFKLVDVNANPAEVAQGRAPVGSEVLPYP 240

Query: 234 -RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
              +      V  +V +SG  L  A   ++ + ++P+V+I F+  G R+F +VT  N+ +
Sbjct: 241 TNPAGPPVIAVYRQVMVSGEDLTDAQQGYNQQGNEPIVNIRFNGAGGRKFGQVTSQNVNR 300

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
           P A++LDG+VL+AP IN+ I  G AQISG+FT+E+A  LA  LR+G LP+ L +VEER V
Sbjct: 301 PFAIILDGKVLSAPNINEPILGGSAQISGSFTVESANQLAIALRSGKLPVALTVVEERTV 360

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG+DSI  G  A +  +  +  FM + YG++G+ A+ ++ +NV++ L ++ +LGATL
Sbjct: 361 GPQLGADSIRAGLTASIIAVAAVAAFMFLSYGRFGIYANLAVAINVLVILGVMGILGATL 420

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAG VL IG AVD+N+L+ ERIREE R+ ++V  S++ G+  A  TIF++N+T  I
Sbjct: 421 TLPGIAGFVLTIGTAVDANVLIYERIREERRRGRNVVQSIEHGYKEASRTIFEANVTHAI 480

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           A  ++   G G V+GFAI + + I  S+FTA++  R ++ + +R K+   I I
Sbjct: 481 AGGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTRLLVSYWVRAKRPTEIHI 533



 Score = 97.8 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 73/176 (41%), Gaps = 5/176 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  + IR G+   II+  A+  ++++ +   F + A   + +++   LG   + G  
Sbjct: 361 GPQLGADSIRAGLTASIIAVAAVAAFMFLSYG-RFGIYANLAVAINVLVILGVMGILGAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++Y+   +  +      +    I+    E        ++
Sbjct: 420 LTLPGIAGFVLTIGTAVDANVLIYE---RIREERRRGRNVVQSIEHGYKEASRTIFEANV 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              I+   M   G   +  FAI +  GI  +  +++     +L+  +    +   I
Sbjct: 477 THAIAGGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTR-LLVSYWVRAKRPTEI 531


>gi|300114774|ref|YP_003761349.1| protein-export membrane protein SecD [Nitrosococcus watsonii C-113]
 gi|299540711|gb|ADJ29028.1| protein-export membrane protein SecD [Nitrosococcus watsonii C-113]
          Length = 618

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 180/521 (34%), Positives = 283/521 (54%), Gaps = 36/521 (6%)

Query: 33  DRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
              P  +       ++LGLDLRGG H ++EVD    V    + Y ++LR+ L++  I   
Sbjct: 106 PATPDWLRAMGGLPMNLGLDLRGGVHFLMEVDMKAAVQQAEERYVEDLRTLLRENRIRYL 165

Query: 90  SM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
           S+ R     + + F +   +E     +      +  +     +           + I LS
Sbjct: 166 SIGRLGAGGVEIKFRNEEQRERAETLIHDEYFDLLLESTEGERSP--------RLEIKLS 217

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
           +    ++   A++Q+M  +R RI+++G++E TIQ+ G +RI++QLPG QD +R +++LG 
Sbjct: 218 EKEQREIQRLALQQNMTTLRNRINELGVAEPTIQQQGENRIVVQLPGVQDTARAKEILGA 277

Query: 209 TAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           TA + F  V          +     G R   +  G   L++ +V ++G H+  A++  + 
Sbjct: 278 TATLEFRLVDTSHDVQRAVEGRVPVGSRLYYERGGAPILLKKRVILTGDHVTDASSGIEQ 337

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLT 304
           +   P V +S D  GAR F +VT +NIGKP+                    V      + 
Sbjct: 338 QGGSPAVFVSLDGQGARHFSQVTGENIGKPMAVVFIETKSETRMEGGEPVKVRRRVPEVI 397

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                +   S + QI+G  + E A  LA +LRAG+L   ++IVEER +G  LG D+I KG
Sbjct: 398 NVATIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIVEERTIGPSLGQDNIDKG 457

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             +++ G  L+++FM + Y  +GLVAD ++  N++L ++LLS+L ATLTLP IAGIVL +
Sbjct: 458 FQSVLIGFALVLVFMALYYRVFGLVADLALTANLVLLVSLLSMLQATLTLPGIAGIVLTV 517

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+ ERIREE R   S   S++ G++ A STI D+NIT LI  VVLF FG G 
Sbjct: 518 GMAVDANVLIFERIREELRNGSSPQASIEAGYANALSTIVDANITTLITAVVLFGFGTGP 577

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           ++GFA+T+ L IL SMFTAI   RA++  I   ++   + I
Sbjct: 578 IKGFAVTLSLGILTSMFTAIMGTRAVINLIYGKRRKVRLAI 618



 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 104/277 (37%), Gaps = 4/277 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S    +        H      +  G     V      +  +       ++       N  
Sbjct: 341 SPAVFVSLDGQGARHFSQVTGENIGKPMAVVFIETKSETRMEGGEPVKVRRRVPEVINVA 400

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             ++ L +     G    +      +  +   +     I     +GP + ++ I KG   
Sbjct: 401 TIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIVEERTIGPSLGQDNIDKGFQS 460

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+I    +L+++ + ++  F L A   L  ++   +   ++      L  +A ++  +G 
Sbjct: 461 VLIGFALVLVFMALYYRV-FGLVADLALTANLVLLVSLLSMLQATLTLPGIAGIVLTVGM 519

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +V+  V++++R+R+ ++      S +  I+      L   V  ++   I+ + +  +G  
Sbjct: 520 AVDANVLIFERIREELR---NGSSPQASIEAGYANALSTIVDANITTLITAVVLFGFGTG 576

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            I  FA+ ++ GI+ +  ++I     ++  IY  R K
Sbjct: 577 PIKGFAVTLSLGILTSMFTAIMGTRAVINLIYGKRRK 613


>gi|113869069|ref|YP_727558.1| preprotein translocase subunit SecD [Ralstonia eutropha H16]
 gi|113527845|emb|CAJ94190.1| preprotein translocase subunit SecD [Ralstonia eutropha H16]
          Length = 623

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 164/515 (31%), Positives = 271/515 (52%), Gaps = 30/515 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL   P +L                + LGLDLRGG H +L+VD    V+  L   
Sbjct: 109 VVALNLLSGSPRWLTAMHA---------LPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             + R+ L+ + I    + +   ++T+ F ++         +   L+ V           
Sbjct: 160 GGDARTLLRDKSIRHGGIDRDGERLTVRFNNADDANRARPLLADNLREV----------- 208

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                    I    ++     V   A++Q++  +  R++++G++E  IQ+ G+ RI++QL
Sbjct: 209 -AFAMDGNNIVGTFTEAARKAVQDAAVKQNITTLHNRVNELGVAEPVIQQQGADRIVVQL 267

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM-----FGVRFLRDSDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +    V  +  +         FG       +G   +++ +V 
Sbjct: 268 PGVQDTAKAKDIIGRTATLEARLVDNDAPRSPRPGDPIPFGSELFTQGNGAPVVLKKQVI 327

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +  A+A FD    +P V+I  D  G R   +V+R+N+ KP+A+VL  +    +  
Sbjct: 328 FTGDRIESASAGFDQNQ-QPSVNIKLDAQGGRVLRDVSRENLKKPMAIVLFEKGKGEVLT 386

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+      QI+G+++ E A  LA +LRAGSL   + I+EER +G  LG+D+I KG 
Sbjct: 387 VATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIRKGF 446

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            ++  G   I +FMI+ Y  +G+ +  ++ +N++L +A+LS+L ATLTLP IA I L +G
Sbjct: 447 DSVAYGFAAIGVFMILYYMLFGVFSVVALGVNLLLLIAVLSMLQATLTLPGIAAIALVLG 506

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NERIREE R   S   ++ +GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 507 MAIDANVLINERIREELRAGASPQMAIAVGFDRAWATILDSNVTTLIAGLALLAFGSGPV 566

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFA+   L IL SMF+A+   R ++      KK 
Sbjct: 567 RGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKK 601



 Score =  151 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 81/181 (44%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + IRKG   V     A+ +++ + +   F + ++  L +++   +
Sbjct: 425 MEIIEERTIGPSLGADNIRKGFDSVAYGFAAIGVFMILYY-MLFGVFSVVALGVNLLLLI 483

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+  ++G +++  V++ +R+R+ ++      S +  I    +  
Sbjct: 484 AVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRA---GASPQMAIAVGFDRA 540

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FA+    GI+ +  S++F    ++   Y  + 
Sbjct: 541 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK 600

Query: 829 K 829
           K
Sbjct: 601 K 601



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 40/120 (33%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG++  LPNF  ++   +  S     ++ L           ++  
Sbjct: 3   RYPLWKYLVILVALAIGIIYTLPNFFGEAPAVQVSSGKATVKVDL----------SMQKQ 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            ++ +            + L+ +G+    +      +   F  +  +    D ++  L  
Sbjct: 53  VEEILAQ----------NQLQPDGVFF-DISGQSGSVKARFRTTDEQLKAKDILSRTLNP 101


>gi|223042004|ref|ZP_03612187.1| preprotein translocase subunit SecF [Actinobacillus minor 202]
 gi|223017202|gb|EEF15631.1| preprotein translocase subunit SecF [Actinobacillus minor 202]
          Length = 324

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 4/297 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM+ R+ G   S++ +   I  + T G N+G+DF GG  +    ++P DL  VR
Sbjct: 16  PYKLIPFMKYRYVGFVFSLILTALCIFSIATKGFNWGLDFTGGTVIETSFSQPADLEKVR 75

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S LE    G    Q    +K+ ++RL    GD     +++ MV + +      +TI++ E
Sbjct: 76  STLEKNGYGSALVQTTGSQKDIMIRLPASAGDKDLGNKIMNMVHQDL---DAGATIKSVE 132

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + +   +L+Y+  RF+   A G I  L  D+  TLG F+   
Sbjct: 133 FVGPNVGEELTQGAIYATLATLGMLLLYVGTRFEVRMAFGGILALFHDVLVTLGVFSFLQ 192

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N        S  ++ID S+++TL R++ T
Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKIRRVSSI-EVIDISLSQTLSRTLMT 251

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           S+     V  +  +GG  I +F++ +  GI     SSI+IA  + L +   R    +
Sbjct: 252 SITTLFVVAALYWFGGPTIHNFSLALLIGIGFGTYSSIYIAIGVALQLGLDREHMNK 308


>gi|239906867|ref|YP_002953608.1| protein-export membrane protein SecD [Desulfovibrio magneticus
           RS-1]
 gi|239796733|dbj|BAH75722.1| protein-export membrane protein SecD [Desulfovibrio magneticus
           RS-1]
          Length = 534

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 190/530 (35%), Positives = 289/530 (54%), Gaps = 19/530 (3%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  W + + S++  +GL+  LP+             +P + ISLGLDL+GG HL L VD 
Sbjct: 4   NLRWRLAVISLVAFLGLIYMLPSLGSVKQ-SFLGKFLPDDVISLGLDLKGGIHLTLGVDV 62

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           D  +   L     ++R  +K EGI +       +   L F  +   +   D +  FL   
Sbjct: 63  DKALANSLAQMGRDVRDQVKDEGIVIQRPGTSPDGKRLEFVLAT-PDK-RDALDKFLSSH 120

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L+            +    +  +Q   D      ++Q+++ IR RID+ G++E  I+
Sbjct: 121 FSVLH--VDGVESAADNKLLYKLSFTQRYKDDQARMTVDQAVKTIRNRIDEFGVAEPDIR 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG---- 238
           +   +RI IQLPG QDP R  +L+G TA + F  V      +    G+    D       
Sbjct: 179 KQADNRIQIQLPGLQDPERAIKLIGKTAHLEFKVVDETVDMEKAQKGILPPGDELSVLRH 238

Query: 239 ---------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                        ++    ++G  +  A ANF    ++  V ++F   GAR+F  VT +N
Sbjct: 239 RNPDGSYLERPIALKADAVMTGESIADARANF-DPNNQAYVALTFTPSGARQFERVTAEN 297

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           + K LA+VLDG+V +AP I + I  G+A I+G F+ E A  LA +LRAG+LP  + I+E+
Sbjct: 298 VKKQLAIVLDGKVYSAPTIQEKIGGGRASITGRFSTEEARDLAIVLRAGALPAPVTILEQ 357

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG  LG +SI KG  + V G ++++ FMIV YG  G VAD ++  N++L +A L+  G
Sbjct: 358 RTVGPSLGQESIEKGVHSAVIGGLIVIAFMIVYYGVAGAVADAALLFNLMLIVAGLAGFG 417

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP IAGI+L IG+AVD+N+++ ER+REE R+  +   ++D+G+SRA  TI D+N+T
Sbjct: 418 ATLTLPGIAGIILTIGMAVDANVIIFERVREELRRGLTARSAVDVGYSRATLTILDANVT 477

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            +IA VVL+ FG G +RGFA+T+ L I+ SMFTAI   R +    +  + 
Sbjct: 478 TVIAAVVLYQFGTGPIRGFAVTLILGIVASMFTAIFFTRFLFDLWLSKRP 527



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 103/247 (41%), Gaps = 5/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V    V+  L  +  G +       EK    R       S  + R L +V +      
Sbjct: 291 ERVTAENVKKQLAIVLDGKVYSAPTIQEKIGGGRASITGRFSTEEARDLAIVLRAGALPA 350

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P++ ++   + GP + +E I KG+   +I  + ++ ++ + +    A+     L  ++  
Sbjct: 351 PVTILEQRTV-GPSLGQESIEKGVHSAVIGGLIVIAFMIVYYGVAGAVADAALLF-NLML 408

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +   A FG    L  +A ++  IG +V+  V++++R+R+ ++     ++ R  +D   +
Sbjct: 409 IVAGLAGFGATLTLPGIAGIILTIGMAVDANVIIFERVREELR---RGLTARSAVDVGYS 465

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                 +  ++   I+ + +  +G   I  FA+ +  GIV +  ++IF    +       
Sbjct: 466 RATLTILDANVTTVIAAVVLYQFGTGPIRGFAVTLILGIVASMFTAIFFTRFLFDLWLSK 525

Query: 827 RAKNARI 833
           R   A +
Sbjct: 526 RPAEASL 532


>gi|50083824|ref|YP_045334.1| preprotein translocase subunit SecD [Acinetobacter sp. ADP1]
 gi|49529800|emb|CAG67512.1| preprotein translocase, IISP family, part of the channel
           [Acinetobacter sp. ADP1]
          Length = 633

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 157/535 (29%), Positives = 270/535 (50%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD +  +   ++    ++R   +   I
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMNKAIAQRMETSVSDIRRQFRDNNI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+    N I L FA++  ++   D +                +  + T T   + + 
Sbjct: 163 KFNSLSLNNNAIVLQFANNADRDTAMDFLRRNGNEY--------TQQAVATATGASLRLS 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ S+A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDARRQEIESYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V   N                        +     G Q L+     ++G 
Sbjct: 275 GRTANLEFRLVADQNDQYIDPYTGKYNGQPLPPGTELFAYESLDSGRQLLLNRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   T    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDTGGAEVNITLDSAGGKLMADATRNAVGKRMAVLFIENKQRVSYVTDPA 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QA+   + +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGAQTEVRTPFTESVIINAATVQAVLGSQFRITGLDSPQEAAELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I KG  +   G +L+ ++MIV +  +GL+A+F++  N+ + L ++S 
Sbjct: 455 EERVVGPSLGQENIDKGILSTEVGFILVAIWMIVFFRLFGLIANFALVFNLAMILTVMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE +   S   ++  G+ RAY+TIFDSN
Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEIKWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   ++   
Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLIYGKRRNLK 629



 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 94/250 (37%), Gaps = 4/250 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   D +            +    N    +  L       G    Q      +  +  
Sbjct: 386 RVSYVTDPATGAQTEVRTPFTESVIINAATVQAVLGSQFRITGLDSPQEAAELALMLRAG 445

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +          +VGP + +E I KGI+   +  I + I++ + F+  F L A   L+ +
Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGILSTEVGFILVAIWMIVFFRL-FGLIANFALVFN 504

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L   +  G    L  +A ++  IG +V+  V++ +R+R+ +K      S +  I  
Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEIKW---GASPKQAIVA 561

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +        +++  F+    +   G   I  FA+ +  GIV +  ++I +   I+  I
Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLI 621

Query: 824 YDWRAKNARI 833
           Y  R    ++
Sbjct: 622 YGKRRNLKKL 631



 Score = 45.5 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 28/117 (23%), Gaps = 25/117 (21%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   W  +L  ++  I  L ALP+  P                             +++
Sbjct: 1   MRYPAWKYVLIIVVLIISTLYALPSLYPDEPA-------------------------VQI 35

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                     Q    +    LK   I         N   L    S  +    D +  
Sbjct: 36  SGAKAGTQIDQSMVQKAEQILKTANITSHDNSFANNAALLRLNSSEDQLKAQDVLRR 92


>gi|240949466|ref|ZP_04753806.1| preprotein translocase subunit SecF [Actinobacillus minor NM305]
 gi|240296039|gb|EER46700.1| preprotein translocase subunit SecF [Actinobacillus minor NM305]
          Length = 324

 Score =  224 bits (570), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 4/297 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM+ R+ G   S++ +   I  + T G N+G+DF GG  +    ++P DL  VR
Sbjct: 16  PYKLIPFMKYRYVGFVFSLILTALCIFSIATKGFNWGLDFTGGTVIETSFSQPADLEKVR 75

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S LE    G    Q    +K+ ++RL    GD     +++ MV + +      +TI++ E
Sbjct: 76  STLEKNGYGSALVQTTGSQKDIMIRLPASAGDKDLGNKIMNMVHQDL---DAGATIKSVE 132

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + +   +L+Y+  RF+   A G I  L  D+  TLG F+   
Sbjct: 133 FVGPNVGEELTQGAIYATLATLGMLLLYVGTRFEVRMAFGGILALFHDVLVTLGVFSFLQ 192

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N        S  ++ID S+++TL R++ T
Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKIRRVSSI-EVIDISLSQTLSRTLMT 251

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           S+     V  +  +GG  I +F++ +  GI     SSI+IA  + L +   R    +
Sbjct: 252 SITTLFVVAALFWFGGPTIHNFSLALLIGIGFGTYSSIYIAIGVALQLGLDREHMNK 308


>gi|261252142|ref|ZP_05944715.1| protein-export membrane protein SecF [Vibrio orientalis CIP 102891]
 gi|260935533|gb|EEX91522.1| protein-export membrane protein SecF [Vibrio orientalis CIP 102891]
          Length = 315

 Score =  224 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 163/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SIL    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAENTIDFMRWSKLAFVFSILMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +RS LE+   GD + QNF   +  +VRL+ +  D   +T   +++           
Sbjct: 61  NLEDIRSALEAEGFGDATVQNFGSAREVMVRLRPRD-DMAGETLGNQILNAIKDGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D+++ SI +TL
Sbjct: 180 VFSMMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDVMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + V GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGITKE 297


>gi|229586924|ref|YP_002845425.1| preprotein translocase subunit SecD [Rickettsia africae ESF-5]
 gi|228021974|gb|ACP53682.1| Protein-export membrane protein secD [Rickettsia africae ESF-5]
          Length = 518

 Score =  224 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 190/530 (35%), Positives = 310/530 (58%), Gaps = 25/530 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W + L  +     ++ ALPN +  +        +P + ++LGLDLRGG+HL+L+VD
Sbjct: 3   KLPKWKIFLSIICTVFAVICALPNVMQVNS-----KFLPHDSVNLGLDLRGGAHLLLDVD 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D ++N  ++  +D LR   +++ I   ++   QN I L        + +   +      
Sbjct: 58  FDTYLNDSMENLADTLRKNFREDKIRYKNLLVRQNSIQLEVRSPEQLKPLKKIINK---- 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                       ++    E +I +  S++ ++ +++  ++QS+EI+R R+D  G  E T+
Sbjct: 114 --------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEPTL 165

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233
           Q+ G   IL+Q+PGE++PS L+ +LG TAK++FH V  N + +  + G   +        
Sbjct: 166 QKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGD 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S G  Y+V  K  + G       +    +  + VV  SF+ +G++ F E+T++N GK 
Sbjct: 226 NASHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTGKR 285

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+VLD ++L+AP IN AI  G   I+GNFT+E+A  LA +LRAGSLP  L I+EER++G
Sbjct: 286 LAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERSIG 345

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
            +LG+DSI  G  A + G + + +FM+  YG  GL A+ ++ L ++  LALLSL  ATLT
Sbjct: 346 PNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQATLT 405

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI D+N+T LI 
Sbjct: 406 LPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTLIV 465

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
             +L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y K K +
Sbjct: 466 AFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  IA+ I++   +     L A   L L +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +      +S    I           +  
Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDA 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   +L+ I+    K  ++
Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVQYFKPKKL 515


>gi|85373546|ref|YP_457608.1| preprotein translocase subunit SecD [Erythrobacter litoralis
           HTCC2594]
 gi|84786629|gb|ABC62811.1| preprotein translocase subunit [Erythrobacter litoralis HTCC2594]
          Length = 532

 Score =  224 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 182/535 (34%), Positives = 305/535 (57%), Gaps = 18/535 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W  I    I    +L A+P+ L  + +  +P A+P   ++LGLDL GGSH++LE 
Sbjct: 2   LEFPRWKKIWLWAITLAVMLAAVPSLLSTTSIR-WPDALPSPTVNLGLDLAGGSHILLEA 60

Query: 61  DEDDFVNGFLQMYSDELRSFLKKE--GIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           +        L+   + +R+ ++     I +  +     +++    DS   +   + +T  
Sbjct: 61  EASQVRAQRLENMEEAVRNAMRSAEPRIRIGDVSTADGQLSFMLDDSGDIDRARELLTPL 120

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           + G         ++  L       + +  +Q+ ++Q ++ A++ + E++R+RID++G  E
Sbjct: 121 MNG-----QGLTREWELTLVDTSRVVLSPTQDGLEQAVTDAMDSATEVVRKRIDELGTRE 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233
            TI R G  RI++Q+PG QDP +L++LLG TAK+ F  V           G+        
Sbjct: 176 PTIIRQGDTRIVVQVPGLQDPDQLKELLGQTAKLEFKMVDETALPSDVEQGIAPPGSQIF 235

Query: 234 -----RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                   +G    V     I G  L GA  +FDP+T++PVV I FD+ G +RF +++  
Sbjct: 236 PYAAGSAQEGLSVAVRRLGGIRGDSLIGAQQSFDPQTNEPVVTIQFDQQGGQRFAQLSTQ 295

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           N+GK  A++LDG VL+ P  N+ I  G AQISG+FT+++A  LA  LR+G+LP+ L +VE
Sbjct: 296 NVGKLFAIILDGEVLSTPSFNEPILGGSAQISGSFTVDSANALAISLRSGALPVDLAVVE 355

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER VG DLG+DSI  G  A+  G + ++  M+  YG++G+ A  ++ +NVI+ L +++++
Sbjct: 356 ERTVGPDLGADSIRSGLLAMAIGSIAVIGLMVATYGRFGIYATAALVINVIMILGIMAVM 415

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
             TLTLP IAG VL +G AVD+N+L+NERIREE ++ + V  +++ G+  A   I+D+N+
Sbjct: 416 NTTLTLPGIAGFVLTVGAAVDANVLINERIREERKRGRRVIAAVENGYREASRAIYDANV 475

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           T  IA V+LF FG G +RGFA+ + + +  S+FTA+++ R  +   +R  +   +
Sbjct: 476 TNFIAGVLLFLFGSGPIRGFAVVLIIGLFTSVFTAVTLTRLWVAGWLRKARPSEL 530



 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 78/177 (44%), Gaps = 8/177 (4%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + IR G++ + I +IA++  +   +   F + A   L++++   LG  A+  
Sbjct: 358 TVGPDLGADSIRSGLLAMAIGSIAVIGLMVATYG-RFGIYATAALVINVIMILGIMAVMN 416

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A  +  +G +V+  V++ +R+R+  K           ++    E        
Sbjct: 417 TTLTLPGIAGFVLTVGAAVDANVLINERIREERKRGRR---VIAAVENGYREASRAIYDA 473

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++  FI+ + + ++G   I  FA+ +  G+     +S+F A  +         + AR
Sbjct: 474 NVTNFIAGVLLFLFGSGPIRGFAVVLIIGL----FTSVFTAVTLTRLWVAGWLRKAR 526


>gi|89068238|ref|ZP_01155648.1| protein-export membrane protein SecF [Oceanicola granulosus
           HTCC2516]
 gi|89046155|gb|EAR52213.1| protein-export membrane protein SecF [Oceanicola granulosus
           HTCC2516]
          Length = 322

 Score =  224 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 170/305 (55%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P      F       +GIS    + ++      GLNYGIDF GG  +   + +P
Sbjct: 1   MRLRLVPQETNWDFFSRSRLWLGISAFMIVLALVSFGVRGLNYGIDFAGGTTIRTESAQP 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGE------KNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD+   R+ L  L++GD++                 V +Q Q G        +  V+  +
Sbjct: 61  VDVGAYRAALAPLELGDVTITEVYDPTFGDDRNVASVAIQAQEGQESVTADTIAQVEAAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
           TE+ P     + E VGP +S ELI+  I+ V ++  A+LIYIW+RF+W FA+GA+  L+ 
Sbjct: 121 TEVAPDIVFASVESVGPTVSGELIKTAILAVCLAIGAVLIYIWLRFEWQFAVGAVLALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  TLG F+  GI F+L+ +AA+LT++GYS+ND VVV+DR+R+N++ +      +++++
Sbjct: 181 DVVLTLGVFSELGIRFDLSIIAALLTIVGYSLNDTVVVFDRVRENLRRFKNR-PLKEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SIN TL R+  TS+   ++++ + V GG VI  F   M +GIVV   SSIF A+  LL 
Sbjct: 240 LSINGTLSRTFMTSLTTLMALIALFVLGGDVIRGFVFAMIWGIVVGTYSSIFAASATLLV 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|85711201|ref|ZP_01042261.1| Preprotein translocase subunit SecF [Idiomarina baltica OS145]
 gi|85695114|gb|EAQ33052.1| Preprotein translocase subunit SecF [Idiomarina baltica OS145]
          Length = 315

 Score =  224 bits (569), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 166/298 (55%), Gaps = 2/298 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               I     I FMR R     IS L  I SI  L  + LN+G+DF GG  + V   +  
Sbjct: 1   MRQFIKTKERIGFMRFRGVFALISGLLLIASIVSLSVNKLNFGLDFTGGTLIEVGFPQAA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  VRS LE+    D   QN+  +++ L+RL  + G   A+    +++      I    
Sbjct: 61  ELDQVRSTLEAGGFDDAVVQNYGTQQDLLIRLAPREG-VKAEELGTQILTTLREGIDNSI 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  E + +G + ++ + I +LIYI +RF+W  A+GA++ L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDEFVEQGGLAMLTALICILIYIAMRFEWRLAVGAVSALAHDVILTLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+  G+EF+LT +AA+L +IGYS+ND VVV DR+R+  + Y   ++   +I++++ +T+
Sbjct: 180 LFSALGLEFDLTVLAALLAVIGYSINDTVVVSDRVRETFRKYAK-LTPTQVINRALTDTM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            R++ TS+   + +L +   GG +I  FA  + FG+ V   SSIF+A+ + L +   R
Sbjct: 239 SRTLITSLTTILVLLALFFVGGQLIHGFATALLFGVFVGTYSSIFVASSVALSLGVSR 296


>gi|83858674|ref|ZP_00952196.1| probable protein-export membrane protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853497|gb|EAP91349.1| probable protein-export membrane protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 327

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 116/309 (37%), Positives = 178/309 (57%), Gaps = 14/309 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIP    I F++ RF    +S+   + S+   FT GLN+GIDF+GG  + V    P DL
Sbjct: 7   RLIPTDTNIPFIKVRFAAFLVSVALILGSLGAFFTLGLNFGIDFRGGTAIEVRTEGPADL 66

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRL-------------QYQPGDSVAQTRVLEMV 638
             +RS +E LQ+GD+  Q F  E   LVR+                  D+ AQ  V + V
Sbjct: 67  GALRSVMEGLQLGDVQVQGFGSENEALVRVGQVSAERVNELEGHAVENDAEAQQAVRQYV 126

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
              +    P  T Q  E + P++S EL+  G   + ++   ML+YIW RF+W +++GA+ 
Sbjct: 127 SDTLEREFPGITFQKIESLSPQVSGELVVAGATSIGVALFLMLVYIWFRFEWQYSVGAVL 186

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            LI D+  T+GFFA+  +EFNL+ +AA+LT++GYS+ND V+VYDR+R++ + + T     
Sbjct: 187 ALIHDVIATIGFFAITQLEFNLSTIAAILTIVGYSMNDTVIVYDRIREDFRKFKTR-PTV 245

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           D+++ +IN TL R++ TS    I+++ MAV GG  +  FA+ + +G+ V   SSIF+AAP
Sbjct: 246 DVLNGAINSTLSRTILTSGTTMIAIVAMAVIGGPALQGFALALIWGVGVGTYSSIFVAAP 305

Query: 819 ILLFIYDWR 827
           +L      R
Sbjct: 306 LLTLTGVKR 314


>gi|307822491|ref|ZP_07652722.1| protein-export membrane protein SecD [Methylobacter tundripaludum
           SV96]
 gi|307736095|gb|EFO06941.1| protein-export membrane protein SecD [Methylobacter tundripaludum
           SV96]
          Length = 615

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 166/523 (31%), Positives = 293/523 (56%), Gaps = 38/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     + + LGLDLRGG H +LEVD D  V      Y+D++R  L+ E +
Sbjct: 104 NLAPTTPAWLRSLGADAMYLGLDLRGGVHFLLEVDMDAAVKQAEDRYNDDVRLALRNEKL 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ +    I +    +  K  +   +    + +      +  +            + 
Sbjct: 164 RYQSVSKDDGFIKVKLNSADDKPALLKVLGKDFRALEVTEPKEQDQVW----------LK 213

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +  +   A+ Q+M  +R R++++G++E  IQ+ G +RI++QLPG QD +R +++L
Sbjct: 214 LSEKEVRDIKKFAVAQNMTTLRNRVNELGVAEPVIQQQGENRIMVQLPGVQDTNRAKEIL 273

Query: 207 GTTAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           GTTA + +  V          +     G R   + +GN  L++ +V ++G  +  +++  
Sbjct: 274 GTTATLEYRLVDVEHDVQKAVEGHVPVGSRLYTERNGNPILLDRRVIVTGDQIVDSSSGV 333

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP-------- 313
           D    +P V+IS + +GA +  ++T+ NIGKP+AVV     +   ++N            
Sbjct: 334 DQDG-RPSVNISLNGVGAAKMGKLTQANIGKPMAVVFIEYKVETKLVNGQKVRHKQKVEK 392

Query: 314 -----------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      S + Q +G  + + A  L+ +LRAG+L   ++IVEER VG  LG D+I 
Sbjct: 393 VINVATIQGVFSHRFQTTGLDSPQEARNLSLLLRAGALAAPVDIVEERTVGPSLGQDNID 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  + + G  L+VLFM V Y  +G++A+F++  NV++ +A+LS+L ATLTLP IAGI+L
Sbjct: 453 KGMLSFMVGFALVVLFMAVYYRLFGMIANFALAFNVVIVVAILSMLQATLTLPGIAGIIL 512

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE +   +   ++ +G+ +A++TI DS+ T L+  VVLF +G 
Sbjct: 513 TVGMSVDANVLIFERIKEELKNGNTPQSAIFIGYEKAFATILDSHFTNLVVAVVLFAYGT 572

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G+V+GFA+T+ + IL SMFTAI+  R ++ +I   ++++ + I
Sbjct: 573 GSVKGFAVTLIIGILSSMFTAITGTRMVINWIYGNRRVEKLSI 615



 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 95/252 (37%), Gaps = 4/252 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G     V     V+  +V       +       N    +          G    Q     
Sbjct: 362 GKPMAVVFIEYKVETKLVNGQKVRHKQKVEKVINVATIQGVFSHRFQTTGLDSPQEARNL 421

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +   +     I     VGP + ++ I KG++  ++    +++++ + ++  F + A
Sbjct: 422 SLLLRAGALAAPVDIVEERTVGPSLGQDNIDKGMLSFMVGFALVVLFMAVYYRL-FGMIA 480

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L  ++   +   ++      L  +A ++  +G SV+  V++++R+++ +K      +
Sbjct: 481 NFALAFNVVIVVAILSMLQATLTLPGIAGIILTVGMSVDANVLIFERIKEELK---NGNT 537

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +  I     +     + +     +  + +  +G   +  FA+ +  GI+ +  ++I   
Sbjct: 538 PQSAIFIGYEKAFATILDSHFTNLVVAVVLFAYGTGSVKGFAVTLIIGILSSMFTAITGT 597

Query: 817 APILLFIYDWRA 828
             ++ +IY  R 
Sbjct: 598 RMVINWIYGNRR 609



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 35/122 (28%), Gaps = 28/122 (22%)

Query: 1   MRN--NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           M+N    W  +L  +I  +G++ ALPN        +  S  P                  
Sbjct: 1   MQNHFPLWKNLLVLIIFAVGIIYALPNLYGDDPSVQVSSTHPTK---------------- 44

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  V          +++      I  F  +     I   F  +  +  +AD +   
Sbjct: 45  ------LVQEQANQIETVIKTA--GFNIKAFEFK--DGHILARFNSADDQLKVADLLRDK 94

Query: 119 LQ 120
           + 
Sbjct: 95  MS 96


>gi|260893134|ref|YP_003239231.1| protein-export membrane protein SecF [Ammonifex degensii KC4]
 gi|260865275|gb|ACX52381.1| protein-export membrane protein SecF [Ammonifex degensii KC4]
          Length = 296

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 94/294 (31%), Positives = 157/294 (53%), Gaps = 7/294 (2%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           + + F+R RF    +S+   +  +  LF  GLN GIDF GG  + V  +RPV+++ VR  
Sbjct: 1   MRLHFVRWRFLWYALSLAVILPGLVSLFLRGLNLGIDFTGGSLIEVEFHRPVEIAEVRQV 60

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           + S  + D   Q             +       + +  + V K + + +   T+  +E V
Sbjct: 61  MASFGLQDALIQKSGTS-------VFLIRTRPLEEKQSQEVVKALEQKIGPLTLLRSEKV 113

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP I +EL RK  +   +S + +LIY+ IRF +   + AI  L+ D+   LG F++F +E
Sbjct: 114 GPVIGKELTRKAFLASGLSLVILLIYLAIRFDFKQGVAAIIGLVHDVLVVLGIFSIFQLE 173

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + + VAAVLT +GYS++D V+V+DR+R+N+K+   S    D+I+ SI +TL RS+ T M
Sbjct: 174 VDSSFVAAVLTTLGYSLHDTVIVFDRIRENIKIRKLSEPLADVINLSIWQTLTRSINTVM 233

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                ++ +   GGS + +F + +  G++  A SS+  A+PI   +  W  K  
Sbjct: 234 TVLFVLVALYFLGGSTLRNFVLALIIGVISGAYSSVCDASPIWYDLKRWEEKRR 287


>gi|56461248|ref|YP_156529.1| preprotein translocase subunit SecD [Idiomarina loihiensis L2TR]
 gi|56180258|gb|AAV82980.1| Preprotein translocase subunit SecD [Idiomarina loihiensis L2TR]
          Length = 614

 Score =  224 bits (569), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 171/522 (32%), Positives = 282/522 (54%), Gaps = 37/522 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++E+D D+ V   +    D +R+ L++E I
Sbjct: 104 NLAPATPEWLKSVGAQPMKLGLDLRGGVHFLMEIDMDEAVRKIVDGMKDTIRAELREERI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R     + +   +       A+ +    QG            LL     + + + 
Sbjct: 164 RYSAVRVNDTTVEIELRNEEAYAEAANYLDGRYQGYT----------LLEDDENQLLQLQ 213

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+  + +   +A+ Q++ I+R R++++G++E  IQR GS+RI+++LPG QD +R +++L
Sbjct: 214 MSEQKLAETRDYAVSQNITIMRNRVNELGVAEPVIQRQGSNRIVVELPGVQDTARAKEIL 273

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V   N  +        FG   +   DG   L+++ V ++G H+       
Sbjct: 274 GATATLEFRMVDSENDVRDAQNGRVPFGSELMPMRDGPAQLLKEDVILTGDHIVN-AGVG 332

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV--------------LTAPV 307
             + ++P V+I+ D  G  +    T+DN+G+P+A V                     A V
Sbjct: 333 YDEYNRPQVNITLDGAGGNKMSLATKDNVGQPMATVFIEYKATDERDAEGNLQFTKNAEV 392

Query: 308 INQAIPSGKAQISGNFT---IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           IN A    +   +   T      A  LA +LRAG+L   + IVEER VG  LG  +I  G
Sbjct: 393 INVATIQSRLGSNFRITGVGANEAQNLALLLRAGALIAPIQIVEERTVGPSLGQQNIDAG 452

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
           T AI  G VL++ FM++ Y K+GLVA+ ++  N++L + ++S++  ATLTLP +AGIVL 
Sbjct: 453 TQAIFWGFVLVLAFMLLYYKKFGLVANCALAANLVLIIGVMSMIPGATLTLPGMAGIVLT 512

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+ ERIREE +  +S   ++  G+  A STI D+N+T LIA ++LF  G G
Sbjct: 513 VGMAVDANVLIFERIREEIKAKRSPQQAIHHGYDSALSTIADANVTTLIAALILFAIGNG 572

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            ++GFAIT+ + I+ SMFTAI   RA++  +   KK+  + I
Sbjct: 573 PIKGFAITLAIGIITSMFTAIVGTRAIVNSVWGGKKLSKLSI 614



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 94/239 (39%), Gaps = 5/239 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +  R    +LQ    +           +   ++     A       +  +   ++    
Sbjct: 374 ATDERDAEGNLQFTKNAEVINVATIQSRLGSNFRITGVGANEAQNLALLLRAGALIAPIQ 433

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     VGP + ++ I  G   +    + +L ++ + +K  F L A   L  ++   +G 
Sbjct: 434 IVEERTVGPSLGQQNIDAGTQAIFWGFVLVLAFMLLYYK-KFGLVANCALAANLVLIIGV 492

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  +G +V+  V++++R+R+ +K      S +  I    +  L
Sbjct: 493 MSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIREEIKAKR---SPQQAIHHGYDSAL 549

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 ++   I+ L +   G   I  FAI +A GI+ +  ++I     I+  ++  + 
Sbjct: 550 STIADANVTTLIAALILFAIGNGPIKGFAITLAIGIITSMFTAIVGTRAIVNSVWGGKK 608


>gi|154248230|ref|YP_001419188.1| protein-export membrane protein SecF [Xanthobacter autotrophicus
           Py2]
 gi|154162315|gb|ABS69531.1| protein-export membrane protein SecF [Xanthobacter autotrophicus
           Py2]
          Length = 357

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 109/295 (36%), Positives = 177/295 (60%), Gaps = 5/295 (1%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DLS 592
           IP    I FMR R W    S + SI ++ L   HG N GIDFKGG  +    ++ V D+ 
Sbjct: 7   IPAQTNIHFMRLRHWTFPFSAVISIVAVVLFAIHGFNLGIDFKGGTLIEAQTSQQVADVG 66

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +R +L  L +GD+  Q F   ++ L+R+        AQ  ++  V+  +       +++
Sbjct: 67  ALREHLTDLDVGDVQIQEFGSPRDVLIRVGAFGTTDEAQQAIITKVRDVL---GAEYSVR 123

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E VGP +S EL+R+ I+ +++ A+A+L Y+W RF+W FA+GAI T + DI  TL  ++
Sbjct: 124 RVETVGPSVSGELVRQSILALVLGAVAVLAYLWFRFEWQFAVGAIVTTMHDIFVTLMIYS 183

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            FGI+F+LT++AA+LT++GYS+ND VVVYDR+R+ ++ Y   +   +L+D ++N T  R+
Sbjct: 184 AFGIDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRY-KKLPLPELLDIAVNATFSRT 242

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  S   F + L +  +GG V+  F++ M  G+V+   S+IF+AAPIL+ +    
Sbjct: 243 IIVSTTTFFATLALYFFGGEVLRGFSLAMTVGVVIGTYSTIFVAAPILIHLGLRS 297


>gi|193213970|ref|YP_001995169.1| preprotein translocase subunit SecF [Chloroherpeton thalassium ATCC
           35110]
 gi|193087447|gb|ACF12722.1| protein-export membrane protein SecF [Chloroherpeton thalassium
           ATCC 35110]
          Length = 307

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 161/309 (52%), Gaps = 11/309 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
               +  +  F+  R     IS    +     +   GLNYGIDFKGG ++ +  ++ +++
Sbjct: 1   MRFLEKPSFDFLGRRKIAYIISTTLILLGFASMLFKGLNYGIDFKGGTEMEIRFDKDINI 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R+ L +  +G  S +N+  ++  ++R  +    S  Q  V  ++  K+        I
Sbjct: 61  GELRTALLAAGVGG-SVKNYGSQQEVIIRTDFDGDLSTLQNLVTNVLTDKLP--DNHHEI 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  + VGP I+ +L    +  +  + IA+L+Y+  RF++ FA   +  +  D+   LG F
Sbjct: 118 RRIDAVGPSIADDLKWSALQALFGALIAILLYVGARFEFKFATAGVVAIFHDVLIVLGLF 177

Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           ++FG       +E + + +AA LT+ GYS+ D VVVYDR+R+N+KL   +  +  + + S
Sbjct: 178 SIFGGVFGVMPLEVDQSTIAAFLTIAGYSITDTVVVYDRIRENLKL-RKNEPYEKIFNDS 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +NETL R+V TS    ++VL + +  G  I SFA  +  GI++   SS+F+AAPI+L   
Sbjct: 237 LNETLSRTVITSGTTLLTVLVLFILAGPAIRSFAFAILMGILIGTYSSLFVAAPIVLDWQ 296

Query: 825 DWRAKNARI 833
                  ++
Sbjct: 297 LRSKTKLKL 305


>gi|186477275|ref|YP_001858745.1| preprotein translocase subunit SecD [Burkholderia phymatum STM815]
 gi|184193734|gb|ACC71699.1| protein-export membrane protein SecD [Burkholderia phymatum STM815]
          Length = 681

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 168/517 (32%), Positives = 273/517 (52%), Gaps = 24/517 (4%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            I  + L  A P++L                + LGLDLRGG H +L+VD    +N  L  
Sbjct: 108 FIVALNLQSASPHWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDS 158

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            + + R+ L+ +GI    + ++   + ++FAD    E    ++T  +  +      +P  
Sbjct: 159 DASDARTLLRDKGIRDGGVNRVGQSVVINFADQDVAETARKQLTAGVSELQWATQPNP-- 216

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
                +   +     +      V   A++Q++  +  R++++G++E  IQ+ GS RI+++
Sbjct: 217 -----SGGFQAVGTFTPAVQKTVEDAALKQNITTLHNRVNELGVAEPVIQQQGSDRIVVE 271

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPN----NSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           LPG QD ++ + ++G TA +      PN    N       G       +    L+   V 
Sbjct: 272 LPGVQDTAKAKDIIGRTATLEARLADPNGLHPNPSDPVPAGDELFTQGNAVPVLLRKSVI 331

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +  
Sbjct: 332 FTGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRSVSRDNIGKPMAMVLFEKGKGEVLT 390

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I KG 
Sbjct: 391 VATIQSELGDRFQITGQPTPQAATDLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGF 450

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            ++V G + I  FMI  Y  +GL++  ++ +N++L +A+LS+L ATLTLP IA I L +G
Sbjct: 451 DSVVYGFIAIAAFMIAYYMLFGLISMIALSVNLLLLIAVLSMLQATLTLPGIAAIALALG 510

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NER+REE R       ++  G++ A++TI DSN+T LIA + L  FG G V
Sbjct: 511 MAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPV 570

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           RGFA+   + IL SMF+A+   R ++      KK   
Sbjct: 571 RGFAVVHCIGILTSMFSAVFFSRGLVNLWYGGKKKLK 607



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 85/209 (40%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+KG   V+   IA+  ++
Sbjct: 405 TGQPTPQAATDLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFDSVVYGFIAIAAFM 464

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F L ++  L +++   +   ++      L  +AA+   +G +++  V++ +R+
Sbjct: 465 IAYY-MLFGLISMIALSVNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERV 523

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   +  FA+    G
Sbjct: 524 REELR---NGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCIG 580

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  + K   +
Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGGKKKLKSL 609



 Score = 41.6 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 29/123 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   IGL+  LPNF  ++                           ++V 
Sbjct: 3   RYPLWKYAVMLVALVIGLVYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMR----QIQNKITLSFADSRFKENIADKVTL 117
                         ++ + L    I    +          I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDSTTLSQVEAALASSQIKPDDVTFDNSTQNANIRVRLKDTDTQLRVKDLLQK 97

Query: 118 FLQ 120
            L 
Sbjct: 98  ALN 100


>gi|161579535|ref|YP_113194.2| preprotein translocase subunit SecD [Methylococcus capsulatus str.
           Bath]
          Length = 616

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 164/517 (31%), Positives = 274/517 (52%), Gaps = 36/517 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    PS +       + LGLDLRGG H +L+VD D  +      Y+++ RS L++  I
Sbjct: 104 NLAPSTPSWLRAFGAKPMYLGLDLRGGVHFLLQVDMDAAIKQAEDRYAEDARSLLRENKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ +    I +   D          +   L+G+           + V   E  +   
Sbjct: 164 RYQSVEKQNGVIQVRLPDPNALSQAQVLLKRELRGL----------QIDVKEGENLLEGR 213

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+    ++   A+ Q+   +R R++++G++E  IQ+ G  RI++QLPG QD +R +++L
Sbjct: 214 LSEVERREIKRFAVAQNTTTLRNRVNELGVAEPVIQQQGEDRIVVQLPGVQDTARAKEIL 273

Query: 207 GTTAKMSFHKVLPNNSKKG----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           G TA + F  V   +           G    RD      L+E K+ ++G  +  A +  D
Sbjct: 274 GATATLEFRLVDNEHPVPAEGEKAPLGSHLYRDRQNRPVLLERKIIVTGDQVVDAASGID 333

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP--------- 313
            ++ +P V ++ + +GA++  + TR+N+G+ +AVV          ++             
Sbjct: 334 QQSGQPAVYVTLNSVGAKKMGDTTRENVGRAMAVVYIENKSETKEVDGQKVTTKKKVEEV 393

Query: 314 ----------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                     S + QI+G  + E A  LA +LRAG+L   ++IVEER VG  +G ++I +
Sbjct: 394 INIATIRDRFSKRFQITGLDSTEEARNLALLLRAGALAAPVDIVEERTVGPSMGKENIDR 453

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  +   G + I +FMI+ Y  +GL +  ++  NV+L +A+LSLL ATLTLP +AGI L 
Sbjct: 454 GVKSNGYGFIAIAVFMILYYRMFGLFSILALAANVLLLVAVLSLLQATLTLPGLAGIALT 513

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+A+D+N+L+NERIREE R   +   ++  G+ RA++TI DSN+T  +A V LF  G G
Sbjct: 514 VGMAIDANVLINERIREELRAGSTPHAAIHAGYERAFATILDSNVTTFVAGVALFLLGAG 573

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            VRGFA+ + + IL SMF+A+ + RA++ F    ++ 
Sbjct: 574 PVRGFALVLCIGILTSMFSAVLVSRALVNFTYGRQRK 610



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 99/257 (38%), Gaps = 4/257 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G     V      +   V     + +       N    ++   +     G    +     
Sbjct: 362 GRAMAVVYIENKSETKEVDGQKVTTKKKVEEVINIATIRDRFSKRFQITGLDSTEEARNL 421

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +   +     I     VGP + +E I +G+       IA+ +++ + ++  F L +
Sbjct: 422 ALLLRAGALAAPVDIVEERTVGPSMGKENIDRGVKSNGYGFIAIAVFMILYYRM-FGLFS 480

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           I  L  ++   +   +L      L  +A +   +G +++  V++ +R+R+ ++      +
Sbjct: 481 ILALAANVLLLVAVLSLLQATLTLPGLAGIALTVGMAIDANVLINERIREELRA---GST 537

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               I           + +++  F++ + + + G   +  FA+ +  GI+ +  S++ ++
Sbjct: 538 PHAAIHAGYERAFATILDSNVTTFVAGVALFLLGAGPVRGFALVLCIGILTSMFSAVLVS 597

Query: 817 APILLFIYDWRAKNARI 833
             ++ F Y  + K  +I
Sbjct: 598 RALVNFTYGRQRKLVKI 614


>gi|238791405|ref|ZP_04635043.1| Protein-export membrane protein secF [Yersinia intermedia ATCC
           29909]
 gi|238729021|gb|EEQ20537.1| Protein-export membrane protein secF [Yersinia intermedia ATCC
           29909]
          Length = 322

 Score =  223 bits (568), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 166/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   G+S+L  + SI ++ T G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRRVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  LE         QNF   ++ +VR+    G    Q    +++      I  
Sbjct: 65  PADLDQLRDTLEKAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESIDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + ++++ + +L+Y+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGILSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|318604599|emb|CBY26097.1| protein-export membrane protein SecF [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 322

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 167/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   G+S+L  + SI ++ T G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEISLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  LE+        QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PADLDQLRDTLEAAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + +I++ + +L+Y+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALIVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGKPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|67459351|ref|YP_246975.1| preprotein translocase subunit SecD [Rickettsia felis URRWXCal2]
 gi|75536223|sp|Q4UKW3|SECD_RICFE RecName: Full=Protein-export membrane protein secD
 gi|67004884|gb|AAY61810.1| Protein-export membrane protein SecD [Rickettsia felis URRWXCal2]
          Length = 518

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 193/532 (36%), Positives = 312/532 (58%), Gaps = 26/532 (4%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N   W + L  +     ++ ALPNF+  +        +P + ++LGLDLRGG+HL+L+
Sbjct: 1   MQNLPKWKIFLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLD 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           VD D ++N  ++  +D LR   +++ IG  ++   QN I L        + +   +    
Sbjct: 56  VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEELKPLKKIINK-- 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         ++    E +I +  S++ ++ +++  ++QS+EI+R R+D  G  E 
Sbjct: 114 ----------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233
           T+Q+ G   IL+Q+PGE++PS L+ +LG TAK++FH V  N + +  + G   +      
Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223

Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
              +S    Y+V  K  + G       +    +  + VV  SF+ +G++ F E+T++N G
Sbjct: 224 GDSESHREYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTG 283

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K LA+VLD ++L+AP IN AI  G   I+GNFT+E+A  LA +LRAGSLP  L I+EER+
Sbjct: 284 KRLAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERS 343

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +G  LG+DSI  G  A + G + + +FM+  YG  GL A+ ++ L ++  LALLSL  AT
Sbjct: 344 IGPSLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI DSN+T L
Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDSNLTTL 463

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           I   +L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y   K +
Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFIPKKL 515



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 73/176 (41%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  IA+ I++   +     L A   L L +   L   +LF 
Sbjct: 343 SIGPSLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +      +S    I           + +
Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDS 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   ++     +     
Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFIPKK 514


>gi|34581475|ref|ZP_00142955.1| protein-export membrane protein secD [Rickettsia sibirica 246]
 gi|28262860|gb|EAA26364.1| protein-export membrane protein secD [Rickettsia sibirica 246]
          Length = 518

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 191/530 (36%), Positives = 312/530 (58%), Gaps = 25/530 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W + L  +     ++ ALPNF+  +        +P + ++LGLDLRGG+HL+L+VD
Sbjct: 3   KLPKWKIFLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLDVD 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D ++N  ++  +D LR   +++ IG  ++   QN I L        + +   +      
Sbjct: 58  FDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEQLKPLKKIINK---- 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                       ++    E +I +  S++ ++ +++  ++QS+EI+R R+D  G  E T+
Sbjct: 114 --------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEPTL 165

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233
           Q+ G   IL+Q+PGE++PS L+ +LG TAK++FH V  N + +  + G   +        
Sbjct: 166 QKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGD 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S G  Y+V  K  + G       +    +  + +V  SF+ +G++ F E+T++N GK 
Sbjct: 226 NASHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAIVAFSFNNLGSKIFGEITKNNTGKR 285

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+VLD ++L+AP IN AI  G   I+GNFT+E+A  LA +LRAGSLP  L I+EER++G
Sbjct: 286 LAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERSIG 345

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
            +LG+DSI  G  A + G + + +FM+  YG  GL A+ ++ L ++  LALLSL  ATLT
Sbjct: 346 PNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQATLT 405

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI D+N+T LI 
Sbjct: 406 LPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTLIV 465

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
             +L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y K K +
Sbjct: 466 AFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  IA+ I++   +     L A   L L +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +      +S    I           +  
Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDA 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   +L+ I+    K  ++
Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVQYFKPKKL 515


>gi|53758903|gb|AAU93194.1| protein-export membrane protein SecD [Methylococcus capsulatus str.
           Bath]
          Length = 605

 Score =  223 bits (568), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 164/517 (31%), Positives = 274/517 (52%), Gaps = 36/517 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    PS +       + LGLDLRGG H +L+VD D  +      Y+++ RS L++  I
Sbjct: 93  NLAPSTPSWLRAFGAKPMYLGLDLRGGVHFLLQVDMDAAIKQAEDRYAEDARSLLRENKI 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ +    I +   D          +   L+G+           + V   E  +   
Sbjct: 153 RYQSVEKQNGVIQVRLPDPNALSQAQVLLKRELRGL----------QIDVKEGENLLEGR 202

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+    ++   A+ Q+   +R R++++G++E  IQ+ G  RI++QLPG QD +R +++L
Sbjct: 203 LSEVERREIKRFAVAQNTTTLRNRVNELGVAEPVIQQQGEDRIVVQLPGVQDTARAKEIL 262

Query: 207 GTTAKMSFHKVLPNNSKKG----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           G TA + F  V   +           G    RD      L+E K+ ++G  +  A +  D
Sbjct: 263 GATATLEFRLVDNEHPVPAEGEKAPLGSHLYRDRQNRPVLLERKIIVTGDQVVDAASGID 322

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP--------- 313
            ++ +P V ++ + +GA++  + TR+N+G+ +AVV          ++             
Sbjct: 323 QQSGQPAVYVTLNSVGAKKMGDTTRENVGRAMAVVYIENKSETKEVDGQKVTTKKKVEEV 382

Query: 314 ----------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                     S + QI+G  + E A  LA +LRAG+L   ++IVEER VG  +G ++I +
Sbjct: 383 INIATIRDRFSKRFQITGLDSTEEARNLALLLRAGALAAPVDIVEERTVGPSMGKENIDR 442

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  +   G + I +FMI+ Y  +GL +  ++  NV+L +A+LSLL ATLTLP +AGI L 
Sbjct: 443 GVKSNGYGFIAIAVFMILYYRMFGLFSILALAANVLLLVAVLSLLQATLTLPGLAGIALT 502

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+A+D+N+L+NERIREE R   +   ++  G+ RA++TI DSN+T  +A V LF  G G
Sbjct: 503 VGMAIDANVLINERIREELRAGSTPHAAIHAGYERAFATILDSNVTTFVAGVALFLLGAG 562

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            VRGFA+ + + IL SMF+A+ + RA++ F    ++ 
Sbjct: 563 PVRGFALVLCIGILTSMFSAVLVSRALVNFTYGRQRK 599



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 99/257 (38%), Gaps = 4/257 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G     V      +   V     + +       N    ++   +     G    +     
Sbjct: 351 GRAMAVVYIENKSETKEVDGQKVTTKKKVEEVINIATIRDRFSKRFQITGLDSTEEARNL 410

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +   +     I     VGP + +E I +G+       IA+ +++ + ++  F L +
Sbjct: 411 ALLLRAGALAAPVDIVEERTVGPSMGKENIDRGVKSNGYGFIAIAVFMILYYRM-FGLFS 469

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           I  L  ++   +   +L      L  +A +   +G +++  V++ +R+R+ ++      +
Sbjct: 470 ILALAANVLLLVAVLSLLQATLTLPGLAGIALTVGMAIDANVLINERIREELRA---GST 526

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               I           + +++  F++ + + + G   +  FA+ +  GI+ +  S++ ++
Sbjct: 527 PHAAIHAGYERAFATILDSNVTTFVAGVALFLLGAGPVRGFALVLCIGILTSMFSAVLVS 586

Query: 817 APILLFIYDWRAKNARI 833
             ++ F Y  + K  +I
Sbjct: 587 RALVNFTYGRQRKLVKI 603


>gi|322834075|ref|YP_004214102.1| protein-export membrane protein SecF [Rahnella sp. Y9602]
 gi|321169276|gb|ADW74975.1| protein-export membrane protein SecF [Rahnella sp. Y9602]
          Length = 324

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 172/302 (56%), Gaps = 2/302 (0%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           P +   L      I FMR       IS L  I S+ ++   G N+G+DF GG  + +  +
Sbjct: 6   PYTVEQLNYGRKVIDFMRWDNVAFCISGLLFIASVAIMGVRGFNWGLDFTGGTVIEISLS 65

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +P +L V+R++LE     D   QNF   ++ +VRL    G+   Q    +++     +I 
Sbjct: 66  QPANLDVMRADLEKAGFKDPVVQNFGSSRDVMVRLPPVSGN-AGQELGNKVLSLVNADID 124

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
             +T++  E VGP +  +L + G + ++++ I +LIY+  RF+W  ALGA+  L  D+  
Sbjct: 125 KDATVKRVEFVGPSVGSDLAQAGGMALLMALICILIYVGFRFEWRLALGAVIALAHDVII 184

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+G  +LF IE +LT +A+++++IGYS+ND +VV DR+R+N +      S+ ++++ S+ 
Sbjct: 185 TMGVLSLFRIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGNSY-EIMNVSLT 243

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   
Sbjct: 244 QTLSRTIMTSATTLMVVLMLYIFGGALLEGFSLTMLIGVSIGTVSSIYVASALALKLGMK 303

Query: 827 RA 828
           R 
Sbjct: 304 RE 305


>gi|262281062|ref|ZP_06058844.1| protein-export membrane protein SecD [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257293|gb|EEY76029.1| protein-export membrane protein SecD [Acinetobacter calcoaceticus
           RUH2202]
          Length = 633

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 159/535 (29%), Positives = 273/535 (51%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  V   ++  + +LR   ++  I
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAVAQRMETSATDLRRQFRENKI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+    N IT+ FAD+  ++   D +                +  L ++T   + + 
Sbjct: 163 KFNSLALTNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASSTGSTLKLT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ S+A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V   N                        +     G Q L++    ++G 
Sbjct: 275 GRTANLEFRLVSDANDQYIDPYTGKYNGQPLPPGTEVFAYESLDSGRQLLLQRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   +    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKITYVTDPK 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QA+     +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I KG  +   G +L+ ++M+V +  +GL+A+F++ +N+ + L ++S 
Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVVNLAMILTVMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE     S   ++  G+ RAY+TIFDSN
Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   +    
Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRHNLK 629



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 D              +    N    +  L       G S  Q      +  +  
Sbjct: 386 KITYVTDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAG 445

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +          +VGP + +E I KG++   I  + + I++ + F+  F L A   L+++
Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVVN 504

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L   +  G    L  +A ++  IG +V+  V++ +R+R+ M       S +  I  
Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVA 561

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +        +++  F+    +   G   I  FA+ +  GI+ +  ++I +   I+  I
Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQII 621

Query: 824 YDWRAKNARI 833
           Y  R    ++
Sbjct: 622 YGKRHNLKKL 631



 Score = 42.4 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 1  MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44
          MR   W  +L  ++  I  L ALP+  P     +   A    +I
Sbjct: 1  MRYPAWKYLLILVVLVISTLYALPSLYPDEPAVQISGAKAGTQI 44


>gi|224373501|ref|YP_002607873.1| preprotein translocase subunit SecF [Nautilia profundicola AmH]
 gi|223588532|gb|ACM92268.1| protein-export membrane protein SecF [Nautilia profundicola AmH]
          Length = 323

 Score =  223 bits (568), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 101/294 (34%), Positives = 164/294 (55%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L  D     FM  R   V IS++  I S+  +FT G N+GIDF+GG+++ V   +  D
Sbjct: 1   MELFRDEKIYDFMSKRNIFVSISLILIILSLFSIFTKGFNWGIDFQGGVEVQVRFEKKAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R  L S +    +   F  E   L+RL  +   +  Q  +   + + +  +     
Sbjct: 61  IGEIRK-LISQKFKGANITTFGNENEVLIRLNVKNASTNVQNDIGHQIAEILKPLG-KID 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  +IVG K+  EL  KG+   I S I +LIY+  RF+W FA+ ++  L  D   +LG 
Sbjct: 119 IRRVDIVGAKVGNELKEKGLQAFIFSIIGILIYVAFRFEWRFAVASVLALFHDTIISLGA 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            + F IE NL  +AA+LTL+GYS+ND +VV+DR+R+ ++  +       LI+ +++ TL 
Sbjct: 179 VSFFHIEVNLDVLAAILTLMGYSLNDTIVVFDRIREQVRD-SKIRDLALLINDAVSRTLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R+V TS+  F  VL + ++GG +I  F+  +  GI+V   SSIFIA+P+L+++ 
Sbjct: 238 RTVLTSLTTFFVVLTLYLFGGEIIKPFSFTLLVGIIVGTYSSIFIASPLLIWMG 291


>gi|293392574|ref|ZP_06636894.1| protein-export membrane protein SecF [Serratia odorifera DSM 4582]
 gi|291424976|gb|EFE98185.1| protein-export membrane protein SecF [Serratia odorifera DSM 4582]
          Length = 322

 Score =  223 bits (567), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 167/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   GIS+L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYVAFGISLLLLIASITVMSVRGFNWGLDFTGGTVIEINLEQ 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P +L ++R  LE     D   QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PANLDLMRDTLEKAGFKDPVLQNFGSSRDIMVRMPPVTG-PAGQELGNKVISVINASVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  EL + G + ++++ I +LIY+  RF+W  A GA+  L  D+  T
Sbjct: 124 NATVKRVEFVGPSVGSELAQNGGMALLVALICILIYVGFRFEWRLAAGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +      S+ ++I+ S+ +
Sbjct: 184 LGVLSLFHIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIINVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTLMTSGTTLMVVLMLYIFGGAMLHGFSLAMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|157146975|ref|YP_001454294.1| preprotein translocase subunit SecF [Citrobacter koseri ATCC
           BAA-895]
 gi|157084180|gb|ABV13858.1| hypothetical protein CKO_02752 [Citrobacter koseri ATCC BAA-895]
          Length = 338

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS    I +I ++   G N+G+DF GG  + +   +
Sbjct: 20  YTVEQLNHGRKVYDFMRWDYWAFGISGFLLIAAIVVMGVRGFNWGLDFTGGTVIEITLEK 79

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  LE     +   QNF    + +VR+    G+   Q    +++         
Sbjct: 80  PAEMDVMRDALEKAGFAEPLLQNFGSSHDIMVRMPPTEGEDGGQVLGSKVLSVINEATSQ 139

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + +I++ I++LIY+  RF+W  A G +  L  D+  T
Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALIVALISILIYVGFRFEWRLAAGVVIALAHDVIIT 199

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 259 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318

Query: 828 A 828
            
Sbjct: 319 E 319


>gi|301595291|ref|ZP_07240299.1| preprotein translocase subunit SecD [Acinetobacter baumannii AB059]
          Length = 633

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 156/535 (29%), Positives = 273/535 (51%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  ++  ++  + +LR   ++  I
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++    N IT+ FAD+  ++   D +                +  L +TT   + + 
Sbjct: 163 KFNNLALNNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASTTGSILKLT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ ++A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDVRRQEIQAYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V                            +     G Q L++    ++G 
Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYQSLDSGRQLLLQRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   +    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPK 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QA+     +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGAKTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I KG  +   G +L+ ++M+V +  +GL+A+F++  N+ + L ++S 
Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE     S   ++  G+ RAY+TIFDSN
Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   ++   
Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLK 629



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 92/245 (37%), Gaps = 4/245 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            D              +    N    +  L       G S  Q      +  +   +   
Sbjct: 391 TDPKTGAKTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAP 450

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                  +VGP + +E I KG++   I  + + I++ + F+  F L A   L+ ++   L
Sbjct: 451 MYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVFNLAMIL 509

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              +  G    L  +A ++  IG +V+  V++ +R+R+ M       S +  I    +  
Sbjct: 510 TIMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVAGYDRA 566

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +++  F+    +   G   I  FA+ +  GI+ +  ++I +   I+  IY  R 
Sbjct: 567 YNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRR 626

Query: 829 KNARI 833
              ++
Sbjct: 627 NLKKL 631


>gi|152968933|ref|YP_001334042.1| preprotein translocase subunit SecF [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238893345|ref|YP_002918079.1| preprotein translocase subunit SecF [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262042430|ref|ZP_06015590.1| protein-export membrane protein SecF [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330006903|ref|ZP_08305775.1| export membrane protein SecF [Klebsiella sp. MS 92-3]
 gi|150953782|gb|ABR75812.1| protein export protein SecF [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238545661|dbj|BAH62012.1| preprotein translocase SecF subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259040205|gb|EEW41316.1| protein-export membrane protein SecF [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535657|gb|EGF62106.1| export membrane protein SecF [Klebsiella sp. MS 92-3]
          Length = 323

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS    I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVWDFMRWDYWAFGISGFLLIVSIAIIGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PVDL  +R +L+     +   QNF   ++ +VR+      + +Q    ++V         
Sbjct: 65  PVDLDQMRDSLQKAGFEEPQVQNFGSSRDIMVRMPPVHDANGSQELGSKVVTVINESTSQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + +I + + +LIY+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 MGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG ++  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLFLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|288958295|ref|YP_003448636.1| preprotein translocase SecF subunit [Azospirillum sp. B510]
 gi|288910603|dbj|BAI72092.1| preprotein translocase SecF subunit [Azospirillum sp. B510]
          Length = 318

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 143/304 (47%), Positives = 204/304 (67%), Gaps = 1/304 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD   I FM  R  G+ +S + SI S+ L F  GLNYGIDF+GGI +     +
Sbjct: 1   MFHLRLVPDNTKIPFMNGRIAGLVVSAILSIASVILFFHPGLNYGIDFRGGIVIEARTPQ 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             D S +R  L  L +G ++ Q F   ++ L+RL+ QPGD  AQ    + V+  + + VP
Sbjct: 61  AADFSSLRHTLSGLGMGQVALQEFGSPQDVLIRLERQPGDDAAQQVAADKVRNTLAQAVP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VG  +S EL   G++ + ++ +AML+YIW RF+W F  GA+ TLILDITK 
Sbjct: 121 GTQVRRVEAVGASVSGELFANGMLALGLAMLAMLVYIWFRFEWQFGFGAVVTLILDITKI 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +GF+A+  I+FNLTAVAA+LT++GYSVNDKVVVYDRMR+N+++Y   +  RDLID SINE
Sbjct: 181 IGFYAVTDIQFNLTAVAAILTVMGYSVNDKVVVYDRMRENLRIY-KKMPLRDLIDLSINE 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R+V TS+   +S++P+A++GG  +  F I + FGIV+A SSS+FIAAPILLF+ + R
Sbjct: 240 TLNRTVGTSVCTLLSIIPLALFGGEALQDFGIVLIFGIVLATSSSVFIAAPILLFLGENR 299

Query: 828 AKNA 831
            +  
Sbjct: 300 LRRG 303


>gi|15829130|ref|NP_326490.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma
           pulmonis UAB CTIP]
 gi|14090074|emb|CAC13832.1| PROTEIN-EXPORT MEMBRANE PROTEIN SECD [Mycoplasma pulmonis]
          Length = 873

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 168/868 (19%), Positives = 319/868 (36%), Gaps = 78/868 (8%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---D 61
            W ++    I  +  +    +              P   ++  +D  GG   +++V    
Sbjct: 18  RWFIVFLITITTVLSVSIGSSLY----------VAPN--VNKSIDYGGGIESLIQVRNAK 65

Query: 62  EDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            ++         S+ L   L    G+   ++           +     ++   K    + 
Sbjct: 66  GENADENLTSQVSNSLHQRLTGGAGVNGSNVSVEGGGKIRISSTGVSSDDDKKKFEDSIV 125

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S +  D   N +        +I                        R+D     E  
Sbjct: 126 KKPSLILTDVNSNPIFQDGFFNPNI------------------------RLDYSKPEEIE 161

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
             R  +           DPSR    +      +   +        ++   R    +    
Sbjct: 162 WHRYVAPIKESSARDLPDPSRPGNSIVQIGLKNQDAITEFAKATDYISKSRIP--TLLFW 219

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++  VE   +  N A      +     V          R       N  +   + +  
Sbjct: 220 LDLKGLVEKGQLAENAADWEASGQRPYNFVFNGNRPFEIDRRVNRLIPNAKRESRLNVSS 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L+   + QA+ +    I+GN T  +A  LA  +  GS    L ++  R V A LG+ S
Sbjct: 280 FLLSEANVRQALNAETFIITGNLTASSAKQLALDVNFGSGDYTLELLSSRFVDATLGTQS 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A +   ++I L MI  YG  G+ +  SI L + L+L + + L    +  +IA +
Sbjct: 340 FNYAIIAGIISFIVIALIMIYNYGVLGIASSLSIGLYIFLSLTVFTWLNGEYSPATIAAL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           V+ IG++VD+NI+  ERI+++ +   S+  +       + STI DSNIT LI + +LF+F
Sbjct: 400 VIAIGMSVDANIITFERIKQQLKYGDSLKKATKNAHRFSLSTILDSNITTLIVSGILFYF 459

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------------------IRYKKMKS 522
           G   +RGF+I++ LSI+  +F  + I R     +                     K+ K 
Sbjct: 460 GTKLIRGFSISLILSIIFILFVMLIITRMATSLLIGTGFFDNRLYLIGVGRSFFTKEKKI 519

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           I       +F +     + F       + I  +F+  +   L     +        I   
Sbjct: 520 ITFFEKLNYFKLSKWFILFFGVFVLIAIIIYSIFAGINGNFLSGFERSLEFQGGTNISFE 579

Query: 583 VLANRPVDLSVVRSN-------------LESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             +   + L+  +                E+L          + +               
Sbjct: 580 KSSIDNLSLAEAQEIKNTLVNLKNTANGSENLITSGAQDIFINAKNQARSNYVVSLQTKQ 639

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
              +       +       +      IV    +  L++  IV + I  + +++Y   R K
Sbjct: 640 VFDQDQINYIIQEVSKTFSNISSTPFIVSTNEASSLVKNSIVSISIGIVGIVLYTIFRLK 699

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W F++ AI  L+ DI   + FF +F +E +   VAA+L++IGYS+ND +V +DR+++ M 
Sbjct: 700 WTFSIAAIVALLHDIVFVIAFFIIFRLEISPIFVAAILSIIGYSINDTIVTFDRIKEIMH 759

Query: 750 LYTTSISFRDLI-----DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
                      +     +K+I +T+ RS+ T++   ++++ +  + GS   +F I +  G
Sbjct: 760 SEYYHQKIDQKVLINITNKAIKDTIKRSMLTTITTLVTIVVLLSFRGSTEVNFNIALFVG 819

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++    SSIFIA+ + + +  +R K  R
Sbjct: 820 LISGTYSSIFIASWLFVKLETFRQKMIR 847


>gi|290474702|ref|YP_003467582.1| preprotein translocase auxillary membrane protein [Xenorhabdus
           bovienii SS-2004]
 gi|289174015|emb|CBJ80802.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Xenorhabdus bovienii SS-2004]
          Length = 322

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 94/301 (31%), Positives = 165/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L      I FMR      GIS+L  + SI  +   G N+G+DF GG  + +  ++
Sbjct: 5   YTVEQLNYGRKVIDFMRWDNVAFGISLLLLVASIITMGVRGFNWGLDFTGGTVIEINLSK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R +L      D   QNF   ++ +VR+    G+   Q    +++      I  
Sbjct: 65  PADLDKMRESLTKNGFADPLLQNFGSSRDVIVRMPPVTGN-AGQELGNKIISVINANIDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  EL + G + ++ + I++LIY+  RF+W  ALGA+  L  D+  T
Sbjct: 124 DAVVKRVEFVGPSVGSELAQTGAMALLAALISILIYVGFRFEWRLALGAVIALAHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 LGVLSLFHIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG ++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLLVVLMLYIFGGEMLKGFSLAMLIGVSIGTISSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|320109189|ref|YP_004184779.1| protein-export membrane protein SecF [Terriglobus saanensis SP1PR4]
 gi|319927710|gb|ADV84785.1| protein-export membrane protein SecF [Terriglobus saanensis SP1PR4]
          Length = 317

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 148/297 (49%), Gaps = 6/297 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              +  +      +      + +LF HG+  G+DFKGG  + V      +   +RS L+ 
Sbjct: 11  WLSKKWYLLSFSLVFSVAGILSMLFWHGVPRGVDFKGGTLVYVSFPSTPNEDHLRSALDK 70

Query: 601 LQIGDISFQNFDGE-----KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             + D   Q   G         ++ +      +    R                 ++ T+
Sbjct: 71  ADVKDFRLQRISGNMGAAANEEVIAVPEMADANHDAARQSIEAALTNNYKDSGFRVEQTD 130

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
           IVGP   ++L R+    ++ S   MLIY+W RF+  +   A+  +  D   T+G F+L  
Sbjct: 131 IVGPTAGKQLTRQAGWAILWSLAGMLIYLWFRFELIYGAAAVVAVFHDTLITIGAFSLTN 190

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E  LT VAA+LTL+GYS+ND +VV+DR+R+N++          +++KSIN+TL R+V +
Sbjct: 191 QEITLTVVAAILTLVGYSMNDTIVVFDRIRENLQTMRK-ADLSTVVNKSINQTLSRTVLS 249

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           S   F++VL + ++GG V+  F+  +  GI++   SSI +AAP+L+   DWRA   +
Sbjct: 250 SGLTFLTVLSLYLFGGEVLHGFSFALVVGILIGTYSSIAVAAPMLVAYQDWRASKGK 306


>gi|238783637|ref|ZP_04627658.1| Protein-export membrane protein secF [Yersinia bercovieri ATCC
           43970]
 gi|238715515|gb|EEQ07506.1| Protein-export membrane protein secF [Yersinia bercovieri ATCC
           43970]
          Length = 322

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 165/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR      GIS+L  + SI ++ T G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRRVYDFMRWDNVAFGISLLLLVASIAVMSTKGFNWGLDFTGGTVIEINLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  LE         QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PADLDQLRDTLEKAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + ++++ + +L+Y+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALLCILVYVGFRFEWRLALGAVIALAHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTLMTSGTTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|323128726|gb|ADX16156.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326626753|gb|EGE33096.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 338

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  FW  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 20  YTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 79

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    ++V         
Sbjct: 80  PAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQ 139

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++++ I++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIIT 199

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 259 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318

Query: 828 A 828
            
Sbjct: 319 E 319


>gi|188026545|ref|ZP_02962529.2| hypothetical protein PROSTU_04657 [Providencia stuartii ATCC 25827]
 gi|188019374|gb|EDU57414.1| hypothetical protein PROSTU_04657 [Providencia stuartii ATCC 25827]
          Length = 337

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 94/310 (30%), Positives = 167/310 (53%), Gaps = 2/310 (0%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
             + +     +   L        FMR      GISI+  I SI ++   G N+G+DF GG
Sbjct: 11  FKEHVVAQDYTVEQLNYGRKVYDFMRWDNVAFGISIVLLIASIAIIGMKGFNWGLDFTGG 70

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             + V  ++P DL  +R +L +    D   QNF   ++ ++RL    G    Q    E++
Sbjct: 71  TVIEVNLSQPADLDKIRDSLSNTAHKDPLIQNFGSSRDIMIRLPPIEG-VAGQEVGKEII 129

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
                 +   +T++  E VGP +  EL + G + ++ + I +LIY+  RF+W  A GA+ 
Sbjct: 130 TIINKNVDEQATVKRIEFVGPSVGAELAQTGALALLTALICILIYVGFRFEWRLATGAVL 189

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L  D+  TLG  +LF IE ++T VA+++++IGYS+ND +VV DR+R+N +       + 
Sbjct: 190 ALAHDVVITLGILSLFHIEIDMTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY- 248

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           ++++ S+ +TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ 
Sbjct: 249 EIMNVSLTQTLSRTIMTSATTLLVVLMLYIFGGAMLEGFSLVMLIGVTIGTISSIYVASA 308

Query: 819 ILLFIYDWRA 828
           + L +   R 
Sbjct: 309 LALKMGMKRE 318


>gi|220932062|ref|YP_002508970.1| protein-export membrane protein SecF [Halothermothrix orenii H 168]
 gi|219993372|gb|ACL69975.1| protein-export membrane protein SecF [Halothermothrix orenii H 168]
          Length = 286

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 160/289 (55%), Gaps = 6/289 (2%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           M  R     IS+   +  +  L   GLN+GIDF+GG  + +  ++ V     R  L +L 
Sbjct: 4   MGKRKIWYTISLTIIVLGLIFLMVKGLNFGIDFQGGTLMELKFDKYVSKEDAREVLATLN 63

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
           +   S      E N ++            +  +  +K+   E  P + +  T++VGP I 
Sbjct: 64  LAKSSKIQQTEEVNGVIIR-----THNLSSEQISEIKQAFKEKYPSTEVLRTDMVGPLIG 118

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           +EL  K    ++I++IA+++YI +RF++ FA+ AI  L+ D+  T+G FA+ G E N   
Sbjct: 119 KELRIKAFWALLIASIAIVLYISLRFEFRFAIVAIIALLHDVIITIGLFAIIGREINTPF 178

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           VAA+LT++GYS+ND +V++DR+R+NMKL      F +  ++++ +TL RS+ TS+   ++
Sbjct: 179 VAALLTIVGYSINDTIVIFDRIRENMKLM-RGKPFIEQANQAVIDTLPRSINTSLTTLVA 237

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           VL + ++GG+ I +F + +  GI+    SSIF+A+P+L+          
Sbjct: 238 VLAIYLFGGASIKTFMLALFIGILAGTYSSIFVASPLLVSWDKKLISKK 286


>gi|237730384|ref|ZP_04560865.1| preprotein translocase subunit SecF [Citrobacter sp. 30_2]
 gi|226905923|gb|EEH91841.1| preprotein translocase subunit SecF [Citrobacter sp. 30_2]
          Length = 338

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 160/301 (53%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS    I +I ++   G N+G+DF GG  + +   +
Sbjct: 20  YTVEQLNHGRKVWDFMRWDYWAFGISGFLLIAAIVVMGVRGFNWGLDFTGGTVIEITLEK 79

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P D+ V+R  LE     D   QNF    + +VR+    G    Q    +++         
Sbjct: 80  PADMDVMRDALEKAGFVDPLLQNFGSSHDIMVRMPPTEGADGGQVLGSKVLSVINESTNQ 139

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + I++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALMAALISILVYVGFRFEWRLAAGVVIALAHDVIIT 199

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 259 TLHRTLITSGTTLMVILMLFLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318

Query: 828 A 828
            
Sbjct: 319 E 319


>gi|238787977|ref|ZP_04631773.1| Protein-export membrane protein secF [Yersinia frederiksenii ATCC
           33641]
 gi|238723925|gb|EEQ15569.1| Protein-export membrane protein secF [Yersinia frederiksenii ATCC
           33641]
          Length = 322

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 167/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   GIS+L  + SI ++ T G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYVAFGISLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  LE+        QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PADLDQLRDTLEAAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + ++++ + +L+Y+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ +  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTLLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|162286720|ref|YP_001085921.2| preprotein translocase subunit SecD [Acinetobacter baumannii ATCC
           17978]
 gi|169632425|ref|YP_001706161.1| preprotein translocase subunit SecD [Acinetobacter baumannii SDF]
 gi|169794704|ref|YP_001712497.1| preprotein translocase subunit SecD [Acinetobacter baumannii AYE]
 gi|184159486|ref|YP_001847825.1| preprotein translocase subunit SecD [Acinetobacter baumannii ACICU]
 gi|213157925|ref|YP_002320723.1| protein-export membrane protein SecD [Acinetobacter baumannii
           AB0057]
 gi|215482291|ref|YP_002324473.1| protein-export membrane protein SecD [Acinetobacter baumannii
           AB307-0294]
 gi|260557109|ref|ZP_05829325.1| protein-export membrane protein SecD [Acinetobacter baumannii ATCC
           19606]
 gi|301347239|ref|ZP_07227980.1| preprotein translocase subunit SecD [Acinetobacter baumannii AB056]
 gi|301511795|ref|ZP_07237032.1| preprotein translocase subunit SecD [Acinetobacter baumannii AB058]
 gi|332852197|ref|ZP_08434002.1| export membrane protein SecD [Acinetobacter baumannii 6013150]
 gi|332868165|ref|ZP_08438044.1| export membrane protein SecD [Acinetobacter baumannii 6013113]
 gi|332873841|ref|ZP_08441782.1| export membrane protein SecD [Acinetobacter baumannii 6014059]
 gi|169147631|emb|CAM85494.1| preprotein translocase, IISP family, part of the channel
           [Acinetobacter baumannii AYE]
 gi|169151217|emb|CAO99900.1| preprotein translocase, IISP family, part of the channel
           [Acinetobacter baumannii]
 gi|183211080|gb|ACC58478.1| Preprotein translocase subunit SecD [Acinetobacter baumannii ACICU]
 gi|193078348|gb|ABO13319.2| preprotein translocase IISP family, part of the channel
           [Acinetobacter baumannii ATCC 17978]
 gi|213057085|gb|ACJ41987.1| protein-export membrane protein SecD [Acinetobacter baumannii
           AB0057]
 gi|213985691|gb|ACJ55990.1| protein-export membrane protein SecD [Acinetobacter baumannii
           AB307-0294]
 gi|260409215|gb|EEX02517.1| protein-export membrane protein SecD [Acinetobacter baumannii ATCC
           19606]
 gi|322509399|gb|ADX04853.1| secD [Acinetobacter baumannii 1656-2]
 gi|323519420|gb|ADX93801.1| preprotein translocase subunit SecD [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332729327|gb|EGJ60667.1| export membrane protein SecD [Acinetobacter baumannii 6013150]
 gi|332733509|gb|EGJ64677.1| export membrane protein SecD [Acinetobacter baumannii 6013113]
 gi|332737945|gb|EGJ68831.1| export membrane protein SecD [Acinetobacter baumannii 6014059]
          Length = 633

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 156/535 (29%), Positives = 273/535 (51%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  ++  ++  + +LR   ++  I
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++    N IT+ FAD+  ++   D +                +  L +TT   + + 
Sbjct: 163 KFNNLALNNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASTTGSILKLT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ ++A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDVRRQEIQAYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V                            +     G Q L++    ++G 
Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYQSLDSGRQLLLQRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   +    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPK 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QA+     +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I KG  +   G +L+ ++M+V +  +GL+A+F++  N+ + L ++S 
Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE     S   ++  G+ RAY+TIFDSN
Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   ++   
Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLK 629



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 92/245 (37%), Gaps = 4/245 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            D              +    N    +  L       G S  Q      +  +   +   
Sbjct: 391 TDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAP 450

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                  +VGP + +E I KG++   I  + + I++ + F+  F L A   L+ ++   L
Sbjct: 451 MYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVFNLAMIL 509

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              +  G    L  +A ++  IG +V+  V++ +R+R+ M       S +  I    +  
Sbjct: 510 TIMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVAGYDRA 566

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +++  F+    +   G   I  FA+ +  GI+ +  ++I +   I+  IY  R 
Sbjct: 567 YNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRR 626

Query: 829 KNARI 833
              ++
Sbjct: 627 NLKKL 631


>gi|291278527|ref|YP_003495362.1| preprotein translocase subunit D [Deferribacter desulfuricans SSM1]
 gi|290753229|dbj|BAI79606.1| preprotein translocase subunit D [Deferribacter desulfuricans SSM1]
          Length = 514

 Score =  223 bits (567), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 194/540 (35%), Positives = 301/540 (55%), Gaps = 41/540 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   +   +  ++    L+   P                  +I LGLDLRGG +++L V
Sbjct: 1   MKY-KFRWAIIFIVVIGSLISLYP---------------INEKIKLGLDLRGGMYVLLGV 44

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D D  V+  L     +++  L+ E IG   +++ ++KI ++  D+       DK+   L 
Sbjct: 45  DVDKAVDAKLDTLVTQIKKDLRNEEIGFNFVKKEKDKIVIALKDNS-----VDKMKKLLS 99

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L         ++  E  +   L    + ++  +A+EQ+ ++IR R+DQ G++E  
Sbjct: 100 KNYPILKESS-----ISENELLVEYQLDPKEVQKIKDYAVEQAAQVIRNRVDQFGVTEPI 154

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--- 237
           IQR G   IL+QLPG  DP R  +L+G TA++ F+ V    +      G     D     
Sbjct: 155 IQRQGEKNILVQLPGITDPDRALKLIGKTAQLKFYLVDDTVTSSDIASGNIPFDDIILYK 214

Query: 238 ------------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                          + ++    ++G +L  A      + ++P V I FD  GA+ F E+
Sbjct: 215 KVIDKRTGKVIENTPFALKRDAVLTGDYLVDAEVRISSQFNEPYVLIKFDSAGAKLFGEI 274

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T++N+GK LA+VLD  V +APVI +AI  G+AQI+GNFT+E A  LA +LRAGSLP  + 
Sbjct: 275 TKNNVGKRLAIVLDNNVYSAPVIREAIMGGEAQITGNFTMEEAKDLAIVLRAGSLPAPVK 334

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E R VG  LG DSI KG  A + GL+L++ FM V Y   G++AD ++ LN+++ L ++
Sbjct: 335 VLENRTVGPSLGKDSIQKGIKASLIGLILVIGFMAVYYKFSGIIADIALLLNLVIILGVM 394

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
            +  ATLTLP IAG++L IG++VD+N+L+ ERIREE R  ++   +++ GF +A STI D
Sbjct: 395 GMFKATLTLPGIAGLILTIGMSVDANVLIFERIREEVRLGRTALSAIEAGFEKAMSTILD 454

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +NIT LIA VVLF FG G V+GFA+T+ + IL SMFTAI + R + + +   KK + + I
Sbjct: 455 ANITTLIAAVVLFQFGTGPVKGFAVTLSIGILASMFTAIFVSRTIFLQLYETKKSRKLSI 514



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 39/174 (22%), Positives = 93/174 (53%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+KGI   +I  I ++ ++ + +K+   + A   L+L++   LG   +F   
Sbjct: 342 GPSLGKDSIQKGIKASLIGLILVIGFMAVYYKFS-GIIADIALLLNLVIILGVMGMFKAT 400

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG SV+  V++++R+R+ ++L  T++S    I+    + +   +  ++
Sbjct: 401 LTLPGIAGLILTIGMSVDANVLIFERIREEVRLGRTALS---AIEAGFEKAMSTILDANI 457

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I+ + +  +G   +  FA+ ++ GI+ +  ++IF++  I L +Y+ +    
Sbjct: 458 TTLIAAVVLFQFGTGPVKGFAVTLSIGILASMFTAIFVSRTIFLQLYETKKSRK 511


>gi|15892817|ref|NP_360531.1| preprotein translocase subunit SecD [Rickettsia conorii str. Malish
           7]
 gi|81528059|sp|Q92H77|SECD_RICCN RecName: Full=Protein-export membrane protein secD
 gi|15620000|gb|AAL03432.1| protein-export membrane protein secD [Rickettsia conorii str.
           Malish 7]
          Length = 518

 Score =  223 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 193/530 (36%), Positives = 313/530 (59%), Gaps = 25/530 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W + L  +     ++ ALPNF+  +        +P + ++LGLDLRGG+HL+L+VD
Sbjct: 3   KLPKWKIFLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLDVD 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D ++N  ++  +D LR   +++ IG  ++   QN I L        + +   +      
Sbjct: 58  FDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEKLKPLKKIINK---- 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                       ++    E +I +  S++ ++ +++  ++QS+EI+R R+D  G  E T+
Sbjct: 114 --------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEPTL 165

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233
           Q+ G   IL+Q+PGE++PS L+ +LG TAK++FH V  N + +  + G   +        
Sbjct: 166 QKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVKGD 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S G  Y+V  K  + G       +    +  + VV  SF+ +G++ F E+T++NIGK 
Sbjct: 226 NASHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNIGKR 285

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+VLD ++L+AP IN AI  G   I+GNFT+E+A  LA +LRAGSLP  L I+EER++G
Sbjct: 286 LAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERSIG 345

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
            +LG+DSI  G  A + G + + +FM+  YG  GL A+ ++ L ++  LALLSL  ATLT
Sbjct: 346 PNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQATLT 405

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI D+N+T LI 
Sbjct: 406 LPGIAGIILTMGMAVDANVLIYERIKEELHKGVSTLYAIRTGFESAFATILDANLTTLIV 465

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
             +L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y K K +
Sbjct: 466 AFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  IA+ I++   +     L A   L L +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +      +S    I           +  
Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSTLYAIRTGFESAFATILDA 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   +L+ I+    K  ++
Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVQYFKPKKL 515


>gi|167855989|ref|ZP_02478735.1| preprotein translocase subunit SecF [Haemophilus parasuis 29755]
 gi|219871164|ref|YP_002475539.1| preprotein translocase subunit SecF [Haemophilus parasuis SH0165]
 gi|167852871|gb|EDS24139.1| preprotein translocase subunit SecF [Haemophilus parasuis 29755]
 gi|219691368|gb|ACL32591.1| preprotein translocase subunit SecF [Haemophilus parasuis SH0165]
          Length = 323

 Score =  223 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 93/293 (31%), Positives = 160/293 (54%), Gaps = 4/293 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               + FM+ R+     S++ +   +  + T G N+G+DF GG  +    ++P DL+ VR
Sbjct: 15  PYKLVPFMKYRYIAYVFSLIITALCVFTIVTKGFNWGLDFTGGTVIETNFSQPADLAKVR 74

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L          Q F G+K+ ++RL    GD      V++++ +K+    P + IQ+ E
Sbjct: 75  EVLTENGYTSALVQTFGGQKDVMIRLPASAGDISLGNTVMDLIHQKL---DPEAKIQSIE 131

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I G + +   +LIY+ +RF+W  A G I  L  D+  T+G F+   
Sbjct: 132 FVGPNVGEELTQGAIYGTLATLAMLLIYVGLRFEWRLATGGILALFHDVMVTIGLFSFLQ 191

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N      + S  +++D S+++TL R++ T
Sbjct: 192 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFPKIRRANSV-EIVDISLSQTLSRTLMT 250

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S+     V  + + GG  + SF++ +  GI     SSI++A  + L +   R 
Sbjct: 251 SVTTLFVVFSLYLLGGPTLHSFSLALLIGIAFGTYSSIYVAVGVALELGLKRE 303


>gi|326387926|ref|ZP_08209532.1| preprotein translocase subunit SecD [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207972|gb|EGD58783.1| preprotein translocase subunit SecD [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 535

 Score =  223 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 185/534 (34%), Positives = 300/534 (56%), Gaps = 17/534 (3%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             W V+L   +  +    ALP+ +      R+P+A+P+ +++LGLDL GGSHL+LE D  
Sbjct: 5   PRWKVLLLWAVTLVIAAAALPSIVD-MAGYRWPAALPEPKVNLGLDLAGGSHLMLEADPT 63

Query: 64  DFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 ++   + +R+ L      + +  +      ++    D+   + + + +   L  
Sbjct: 64  QVRTQRIEGMEESVRNKLHAMAQPVRISDISNNNGSLSFLIDDATKVDAVREAL---LPL 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            N       +   +         +  +   IDQ +S A++ ++E++R+RID +G  E TI
Sbjct: 121 TNGAGLTGKRDWTINVVDGNRFVLSPTPEGIDQAVSQAMDTAVEVVRKRIDALGTKEPTI 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD---- 237
            R G+ RI++Q+PG QDP  L+ LLG TAK+ F  V           G+    D      
Sbjct: 181 IRSGATRIVVQVPGLQDPQGLKNLLGQTAKLEFKLVDQTADAAQVYQGIAPPGDEIVPYA 240

Query: 238 -------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                    +  V+    I G  L  A  + + +T++P V I+F+  G  RF ++T  N+
Sbjct: 241 ETKAGQPAAKIAVKRLGGIRGDQLTNAQLSSNQQTNQPTVTITFNTDGGERFAKLTSANV 300

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           GKP A++LDG+VL+APVIN+ I  G A ISGNFT ++AG LA  LR+G+LP+ L +VEER
Sbjct: 301 GKPFAIILDGKVLSAPVINEPILGGSAVISGNFTSDSAGQLAIALRSGALPVDLKVVEER 360

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG DLG+DSI+KG  A+  G + + +F++  YG++G+ A  ++  NV + L ++ ++G 
Sbjct: 361 TVGPDLGADSIHKGMIAMGIGTLALAVFILATYGRFGVYACVALVFNVFMILGVMGIIGT 420

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAG VL IG AVD+N+L+NERIREE  + + V  ++++G+  A   IFD+NIT 
Sbjct: 421 TLTLPGIAGFVLTIGAAVDANVLINERIREERHRGRRVVQAVELGYKEAGRAIFDANITN 480

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +IA +++  FG G ++GFA+ + + I  S+FTAI + R  +   +R  +   + 
Sbjct: 481 VIAAMLMLAFGSGPIKGFAVVLIIGIATSVFTAIMLTRMWVAQWLRRARPTELS 534



 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 76/176 (43%), Gaps = 5/176 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I KG++ + I  +A+ ++I   +   F + A   L+ ++   LG   + G  
Sbjct: 363 GPDLGADSIHKGMIAMGIGTLALAVFILATYG-RFGVYACVALVFNVFMILGVMGIIGTT 421

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++ +R+R+              ++    E        ++
Sbjct: 422 LTLPGIAGFVLTIGAAVDANVLINERIREERHRGRR---VVQAVELGYKEAGRAIFDANI 478

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              I+ + M  +G   I  FA+ +  GI  +  ++I +   + +  +  RA+   +
Sbjct: 479 TNVIAAMLMLAFGSGPIKGFAVVLIIGIATSVFTAIMLTR-MWVAQWLRRARPTEL 533


>gi|239501675|ref|ZP_04660985.1| preprotein translocase subunit SecD [Acinetobacter baumannii AB900]
          Length = 633

 Score =  223 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 157/535 (29%), Positives = 273/535 (51%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  ++  ++  + +LR   ++  I
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRENKI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++    N IT+ FAD+  ++   D +                +  L +TT   + + 
Sbjct: 163 KFNNLALNNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASTTGSILKLT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ ++A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDVRRQEIQAYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V                            +     G Q L++    ++G 
Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYQSLDSGRQLLLQRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   +    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKISYVTDPK 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QAI     +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAILGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I KG  +   G +L+ ++M+V +  +GL+A+F++  N+ + L ++S 
Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVFNLAMILTIMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE     S   ++  G+ RAY+TIFDSN
Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   ++   
Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLK 629



 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 92/245 (37%), Gaps = 4/245 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            D              +    N    +  L       G S  Q      +  +   +   
Sbjct: 391 TDPKTGAQTEVRTPYTESVVINAATVQAILGSTFRITGLSSPQEASELALMLRAGALAAP 450

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                  +VGP + +E I KG++   I  + + I++ + F+  F L A   L+ ++   L
Sbjct: 451 MYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRL-FGLIANFALVFNLAMIL 509

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              +  G    L  +A ++  IG +V+  V++ +R+R+ M       S +  I    +  
Sbjct: 510 TIMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVAGYDRA 566

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +++  F+    +   G   I  FA+ +  GI+ +  ++I +   I+  IY  R 
Sbjct: 567 YNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRR 626

Query: 829 KNARI 833
              ++
Sbjct: 627 NLKKL 631


>gi|157803567|ref|YP_001492116.1| preprotein translocase subunit SecD [Rickettsia canadensis str.
           McKiel]
 gi|157784830|gb|ABV73331.1| protein export protein SecD [Rickettsia canadensis str. McKiel]
          Length = 520

 Score =  223 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 199/528 (37%), Positives = 322/528 (60%), Gaps = 23/528 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             W + L  +      + ALPNF+  +        +P + ++LGLDLRGG+HL+L+VD +
Sbjct: 5   PKWKIFLSIICTVFATICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLLDVDFE 59

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
            ++N  ++  +D LR   +++ IG  ++   QN+ ++       KE    ++   +  ++
Sbjct: 60  SYLNDSMENLADTLRKNFREDKIGYKNLLVNQNQNSIQLELRTSKE--LKQLKKIINKID 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S+        ++V   E +I +  S + ++ +++  ++QS+EI+R R+D  G  E T+Q+
Sbjct: 118 SE--------IIVEVNENKIKLRYSDSRLNDLLNKVVDQSIEIVRMRVDSTGTKEPTLQK 169

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL--------RD 235
            G   IL+Q+PGE++PS L+ +LG TAK++FH V  N + +  + G   +         +
Sbjct: 170 QGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLIKGDSE 229

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S G  Y+V  K  + G       +    +  + VV  SF+ +G++ F E+T++N GK LA
Sbjct: 230 SHGEYYVVIKKKVVLGGDQLTTASVSFDQNSQAVVTFSFNNLGSKIFGEITKNNTGKRLA 289

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD ++L+AP+IN AI  G   I+GNFT+E+A  LA +LRAGSLP  LNI+EER++G +
Sbjct: 290 IVLDNKLLSAPMINGAIMGGSGIITGNFTVESAHELALLLRAGSLPAPLNIIEERSIGPN 349

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG+DSI  G  A + G + + +FMI  YG  GL A+ ++ L ++  LALLSL  ATLTLP
Sbjct: 350 LGADSIESGKKAGLIGFIAVCIFMIWSYGVLGLFANIALSLALLYILALLSLFQATLTLP 409

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGI+L IG+AVD+N+L+ ERI+EE  K  S   ++  GF+ A++TI DSN+T LI   
Sbjct: 410 GIAGIILTIGMAVDANVLIYERIKEELHKGVSNLYAIRTGFASAFATILDSNLTTLIVAS 469

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           +L+ FG GA++GFAIT+ + I+ SMF+AI I + ++   ++Y K K +
Sbjct: 470 LLYIFGVGAIKGFAITLTIGIISSMFSAIIITKLLIDIWVKYFKSKKL 517



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 79/178 (44%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  IA+ I++   +     L A   L L +   L   +LF 
Sbjct: 345 SIGPNLGADSIESGKKAGLIGFIAVCIFMIWSYGVL-GLFANIALSLALLYILALLSLFQ 403

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++Y+R+++ +      +S    I           + +
Sbjct: 404 ATLTLPGIAGIILTIGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFASAFATILDS 460

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FAI +  GI+ +  S+I I   +L+ I+    K+ ++
Sbjct: 461 NLTTLIVASLLYIFGVGAIKGFAITLTIGIISSMFSAI-IITKLLIDIWVKYFKSKKL 517


>gi|303256881|ref|ZP_07342895.1| protein-export membrane protein SecD [Burkholderiales bacterium
           1_1_47]
 gi|330998870|ref|ZP_08322597.1| export membrane protein SecD [Parasutterella excrementihominis YIT
           11859]
 gi|302860372|gb|EFL83449.1| protein-export membrane protein SecD [Burkholderiales bacterium
           1_1_47]
 gi|329576084|gb|EGG57603.1| export membrane protein SecD [Parasutterella excrementihominis YIT
           11859]
          Length = 632

 Score =  223 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 176/506 (34%), Positives = 286/506 (56%), Gaps = 21/506 (4%)

Query: 30  SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++   P+ + K     + LGLDLRGG H +L VD    V   ++  + E+R+ L+   I
Sbjct: 115 NLVPNTPTWLLKINALPMYLGLDLRGGVHFLLAVDMKAAVTKRIEAATGEVRTLLRDHKI 174

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + ++ + + +SF + +  E   D +             D          +  I   
Sbjct: 175 RHAGIVRVGDTLEISFRNEQDLEAAMDVLRNR--------QTDLTFAKEDQNGKFMIRAT 226

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +SQ  +  V S+A++Q++  +  RI+++G++E  I + G+ RI++QLPG QD ++ + +L
Sbjct: 227 MSQKAMSDVQSYALKQNVATLHNRINELGVAEPVIAQQGADRIVVQLPGVQDTAKAKDIL 286

Query: 207 GTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           G TA +    V  +             FG    +D +G   LV+ +V ++G +LN A   
Sbjct: 287 GRTATLEVRMVDDSPEALAQLSQGTVPFGTERFKDREGRDILVKRQVVLTGDNLNDAQPG 346

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSGK 316
           FD +TH+P V+++ D  GAR F +VTR+N+GK +         G V+TAPVI Q I  G+
Sbjct: 347 FDNQTHEPTVNLTLDAKGARIFKDVTRENVGKRMAIILFEKGKGEVVTAPVIRQEIGGGR 406

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
            QISG  T   A   A +LRAGSL   + I+EER VG  LG+ +I  G  + + G + + 
Sbjct: 407 VQISGRMTTVEATDTALLLRAGSLAAPMEIIEERLVGPSLGAANIKAGFESTLWGFIAVS 466

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           +FM++ Y  +G+ +  ++  N+ L +A+LS+L ATLTLP IA + L +G+AVD+N+L+NE
Sbjct: 467 VFMVIYYHLFGVFSAIALTCNLFLLVAILSMLQATLTLPGIAAMALTLGMAVDANVLINE 526

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           RIREE R+N++   ++  G+  A++TI DSNIT+LIA + L  FG G VRGFA+   L I
Sbjct: 527 RIREELRENRTPQQAIKEGYDMAFNTILDSNITSLIAGIALLIFGSGPVRGFAVVHCLGI 586

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKS 522
           L S+FT++ + RA++      +K  +
Sbjct: 587 LTSIFTSVMVSRALVNLWYGRRKKLT 612



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 86/208 (41%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I    +VGP +    I+ G    +   IA+ 
Sbjct: 407 VQISGRMTTVEATDTALLLRAGSLAAPMEIIEERLVGPSLGAANIKAGFESTLWGFIAVS 466

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ I +   F + +   L  ++   +   ++      L  +AA+   +G +V+  V++ 
Sbjct: 467 VFMVIYYHL-FGVFSAIALTCNLFLLVAILSMLQATLTLPGIAAMALTLGMAVDANVLIN 525

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      + +  I +  +      + +++ + I+ + + ++G   +  FA+  
Sbjct: 526 ERIREELRENR---TPQQAIKEGYDMAFNTILDSNITSLIAGIALLIFGSGPVRGFAVVH 582

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  +S+ ++  ++   Y  R K
Sbjct: 583 CLGILTSIFTSVMVSRALVNLWYGRRKK 610



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 44/156 (28%), Gaps = 31/156 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  IL ++I  +  +  LPNF  +S                           ++V 
Sbjct: 3   RYPLWKYILIAVILIVAAVYTLPNFYGESPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                    +     +   L    I      F     QN + + FA     E +  +   
Sbjct: 38  PGKATVKVTEQTLKTVEDALAAAQIKPNGVFFEQGAQQNSVRVRFAP-TDGE-LQLRSRD 95

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
            L+   +    DP   + +       + +L  N + 
Sbjct: 96  VLEKALNPDPADPSYIVALNLVPNTPTWLLKINALP 131


>gi|323697902|ref|ZP_08109814.1| protein-export membrane protein SecD [Desulfovibrio sp. ND132]
 gi|323457834|gb|EGB13699.1| protein-export membrane protein SecD [Desulfovibrio desulfuricans
           ND132]
          Length = 531

 Score =  223 bits (566), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 178/532 (33%), Positives = 294/532 (55%), Gaps = 23/532 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M++     I+   +  +GL   LP+ LP          +P N I+LGLDL+GG +L L V
Sbjct: 1   MQSLRLRAIIALFVVLLGLAFMLPS-LPGVKDSSLGKVLPGNGINLGLDLKGGIYLTLGV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFL 119
           D    ++  L    D+L++  +++ + +       +N I ++   S  K+     +    
Sbjct: 60  DMKTAMDNNLARLGDDLKASAREQDVYILRPTVLNENAIEVTLIKSEQKDAFEGVIKD-- 117

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                      +++  +   + +  + +      +V    ++Q+++ IR RIDQ G++E 
Sbjct: 118 -----YTPFTIEQSTPLDGDKVKYVLSVPPKYRTEVEKLTMDQAIKTIRNRIDQFGVAEP 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV--------- 230
            I++   +RI +QLPG  DP R  +++G TA + F  V  +   K    G+         
Sbjct: 173 EIRKQQDNRIQVQLPGLADPERAIRIIGQTAHLEFKMVDDSADLKKAQQGILSPGRELAD 232

Query: 231 ----RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
               +       +  +++    ++G +++ A    D       V ++F+  GA+ F ++T
Sbjct: 233 LLHRQANGTYAKSPIVLKKDAVLTGEYVSDAQVRLDQWN-NAYVALTFNARGAKIFTDLT 291

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
            DN+ K +A+VLDG+V +APVI + I  GKA I+GNFT E A  LA +LRAGSLP  + I
Sbjct: 292 ADNVNKRMAIVLDGQVYSAPVIRERIAGGKASITGNFTREEARDLAVVLRAGSLPAPVTI 351

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +E+R+VG  LG +SI  G  + + G+ L++L M+V YG  G+VAD  + LN++L +  L+
Sbjct: 352 LEQRSVGPSLGQESINSGIMSAMVGMALVLLCMVVYYGFGGVVADIVLVLNIMLIMGGLA 411

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
             GATLTLP IAGI+L IG+AVD+N+++ ERIREE R+  S   S+  G+ RA  TI D+
Sbjct: 412 AFGATLTLPGIAGIILTIGMAVDANVIIYERIREELRRGLSPKQSVAEGYGRATLTILDA 471

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           N+T +IA ++L+ FG G +RGFA+T+ L I+ SMFTAI + R +    ++ +
Sbjct: 472 NVTTVIAAIILYQFGTGPIRGFAVTLTLGIITSMFTAIFVSRILFDLYLKNR 523



 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 88/180 (48%), Gaps = 4/180 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VGP + +E I  GI+  ++    +L+ + + + +   + A   L+L+I   +G  A 
Sbjct: 354 QRSVGPSLGQESINSGIMSAMVGMALVLLCMVVYYGFG-GVVADIVLVLNIMLIMGGLAA 412

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  IG +V+  V++Y+R+R+ ++     +S +  + +         +
Sbjct: 413 FGATLTLPGIAGIILTIGMAVDANVIIYERIREELR---RGLSPKQSVAEGYGRATLTIL 469

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++   I+ + +  +G   I  FA+ +  GI+ +  ++IF++  +       RA NA++
Sbjct: 470 DANVTTVIAAIILYQFGTGPIRGFAVTLTLGIITSMFTAIFVSRILFDLYLKNRADNAKL 529


>gi|325123438|gb|ADY82961.1| preprotein translocase subunit SecD [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 633

 Score =  223 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 158/535 (29%), Positives = 272/535 (50%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  V   ++  + +LR   ++  I
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAVAQRMETSATDLRRQFRENKI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+    N IT+ FAD+  ++   D +                +  L ++T   + + 
Sbjct: 163 KFNSLALTNNVITVQFADNADRDAAMDFLRRNGNEY--------TQQALASSTGSTLKLT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ S+A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V                            +     G Q L++    ++G 
Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYESLDSGRQLLLQRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   +    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKINYVTDPK 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QA+     +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I KG  +   G +L+ ++M+V +  +GL+A+F++  N+ + L ++S 
Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRVFGLIANFALVFNLAMILTVMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE     S   ++  G+ RAY+TIFDSN
Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   ++   
Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLK 629



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             N   D              +    N    +  L       G S  Q      +  +  
Sbjct: 386 KINYVTDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAG 445

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +          +VGP + +E I KG++   I  + + I++ + F+  F L A   L+ +
Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRV-FGLIANFALVFN 504

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L   +  G    L  +A ++  IG +V+  V++ +R+R+ M       S +  I  
Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVA 561

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +        +++  F+    +   G   I  FA+ +  GI+ +  ++I +   I+  I
Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQII 621

Query: 824 YDWRAKNARI 833
           Y  R    ++
Sbjct: 622 YGKRRNLKKL 631



 Score = 42.8 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 1  MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44
          MR   W  +L  ++  I  L ALP+  P     +   A    +I
Sbjct: 1  MRYPAWKYLLILVVLVISTLYALPSLYPDEPAVQISGAKAGTQI 44


>gi|238752765|ref|ZP_04614234.1| Protein-export membrane protein secF [Yersinia rohdei ATCC 43380]
 gi|238709023|gb|EEQ01272.1| Protein-export membrane protein secF [Yersinia rohdei ATCC 43380]
          Length = 322

 Score =  223 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 166/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR      GIS+L  + SI ++   G N+G+DF GG  + +  ++
Sbjct: 5   YTVEQLNYGRRVYDFMRWDNVAFGISLLLLVASIAIISVKGFNWGLDFTGGTVIEINLDK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  LE+        QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PADLDQLRDTLEAAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + ++++ + +L+Y+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRVEFVGPSVGSDLAQAGGMALLVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|206579173|ref|YP_002240124.1| protein-export membrane protein SecF [Klebsiella pneumoniae 342]
 gi|288936873|ref|YP_003440932.1| protein-export membrane protein SecF [Klebsiella variicola At-22]
 gi|290510071|ref|ZP_06549441.1| preprotein translocase SecF subunit [Klebsiella sp. 1_1_55]
 gi|206568231|gb|ACI10007.1| protein-export membrane protein SecF [Klebsiella pneumoniae 342]
 gi|288891582|gb|ADC59900.1| protein-export membrane protein SecF [Klebsiella variicola At-22]
 gi|289776787|gb|EFD84785.1| preprotein translocase SecF subunit [Klebsiella sp. 1_1_55]
          Length = 323

 Score =  223 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 163/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS    I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVWDFMRWDYWAFGISGFLLIVSIAIIGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PVDL  +R +L+     +   QNF   ++ +VR+      +V+Q    ++V         
Sbjct: 65  PVDLDQMRDSLQKAGFEEPQVQNFGSSRDIMVRMPPVHDANVSQELGSKVVTVINESTSQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + +I + + +LIY+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGALALIAALVCILIYVGFRFEWRLAAGVVIALAHDVVIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 MGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG ++  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLFLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|310778167|ref|YP_003966500.1| protein translocase subunit secF [Ilyobacter polytropus DSM 2926]
 gi|309747490|gb|ADO82152.1| protein translocase subunit secF [Ilyobacter polytropus DSM 2926]
          Length = 296

 Score =  223 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 140/294 (47%), Gaps = 2/294 (0%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           + I  +      +G+S    I ++  L   GLN+GIDF GG        + V L  V S 
Sbjct: 1   MKIDIINHTTKWLGVSAFVVIFAVVGLLFKGLNFGIDFSGGNLYQFKFEKNVTLGEVNSF 60

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            + +            +             S             +        +Q  + V
Sbjct: 61  FDEVSKDYPQLDGKSRKVQVSGENTVILRTSEMDENQKNDFLNTVENFG-KYDLQKADKV 119

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  I  EL       +I+  I +++YI IRF++ FA+ A+  L  D+  ++G  AL G E
Sbjct: 120 GATIGEELKSSAFYALILGCILIVLYITIRFEFKFAMAAVIALFHDVIISVGGIALLGYE 179

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            N   +AAVLT++GYS+ND +VV+DR+R+ +K    S    + I+ SIN+ + RS+ TS+
Sbjct: 180 VNTPFIAAVLTILGYSINDTIVVFDRIRETLKR-KKSPELGEAINISINQVMTRSINTSL 238

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F++V+ + V+GG  + +F   +  G+V    SSIF+A+P++  +   + K A
Sbjct: 239 TTFLAVIAILVFGGESLKTFITTLLIGVVAGTYSSIFVASPLVYLLEKNKDKEA 292


>gi|157369307|ref|YP_001477296.1| preprotein translocase subunit SecF [Serratia proteamaculans 568]
 gi|157321071|gb|ABV40168.1| protein-export membrane protein SecF [Serratia proteamaculans 568]
          Length = 322

 Score =  223 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 94/301 (31%), Positives = 167/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   GIS+L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYVAFGISLLLLIASIAIMSVRGFNWGLDFTGGTVIEISLEQ 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P +L ++R  LE     D   QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PANLDLMRDTLEKAGFQDPIIQNFGSSRDVMVRMPPAIGT-AGQELGNKVISVINDSVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  EL + G + ++++ I +LIY+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NATVKRIEFVGPSVGTELAQNGGMALLVALICILIYVGFRFEWRLALGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 LGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTLMTSGTTLMVVLMLYIFGGAMLHGFSLAMLIGVSIGTISSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|259419271|ref|ZP_05743188.1| protein-export membrane protein SecF [Silicibacter sp. TrichCH4B]
 gi|259345493|gb|EEW57347.1| protein-export membrane protein SecF [Silicibacter sp. TrichCH4B]
          Length = 322

 Score =  223 bits (566), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 177/305 (58%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P+  +  F R     +GIS +  +         GLN+GIDF+GG  +   A + 
Sbjct: 1   MRLKLVPEGTSFDFFRLWKLWLGISAMMVVIGFASFALQGLNFGIDFRGGTTIRTEATQD 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642
           +D+ V R  +  L++GDI+                ++R++ Q       + V+  V+  +
Sbjct: 61  LDIGVYRDAIAPLELGDITITEVFDPTFDEDQHVAMIRIEAQEDGEALSSSVIADVQGAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             + P     + E VGPK+S EL++  I+ V ++  A+L+YIW+RF+W FALGA+  L+ 
Sbjct: 121 DAVAPGIKFISVESVGPKVSGELVQTAIMAVALAIGAVLVYIWLRFEWQFALGAVAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I+F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y       ++++
Sbjct: 181 DVILTIGVFSELQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRY-KQKPLAEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINETL R++ TS+   ++++ + V GG VI  F   M +G+VV   SSIF+A+ ILL+
Sbjct: 240 ISINETLSRTMMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVVVGTYSSIFVASTILLW 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|317484713|ref|ZP_07943614.1| protein-export membrane protein SecD [Bilophila wadsworthia 3_1_6]
 gi|316924069|gb|EFV45254.1| protein-export membrane protein SecD [Bilophila wadsworthia 3_1_6]
          Length = 528

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 190/534 (35%), Positives = 289/534 (54%), Gaps = 15/534 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M++  W +++  ++    ++  LP+ LP        + +P  RISLGLDL+GG HL L V
Sbjct: 1   MKSLSWRIVVSLLVLLASIVYVLPS-LPGVGGSSLGNLLPDARISLGLDLKGGMHLTLGV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           + D  V+  L +   ELR+   ++GI V   R   +   L F   R       ++   L 
Sbjct: 60  EVDKAVSNSLSLTGQELRAQASEKGITVLRSRLTPDN-RLEFLLPR--AEQRTELQELLS 116

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L         V       +   +     ++   A++Q++  IR RIDQ G++E  
Sbjct: 117 KDFPQL--AVDSPTQVEGGGLRFTAAFTPAAKAKIEEMALDQAVRTIRNRIDQFGVAEPD 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG---------FMFGVR 231
           I++    RI IQLPG  D  R  QL+G TA+++FH V  + + +G          M  VR
Sbjct: 175 IRKQADFRIQIQLPGLTDSKRAIQLVGQTAQLTFHLVRDDVNPQGILPPGVALFPMVTVR 234

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
               +  +   ++ +  ++G  +  A   FD + +KP V +SF+  GA  F  +T ++I 
Sbjct: 235 PDGSTSESMIALDKEPLMTGEDVADARPTFDNRDNKPSVGLSFNSRGAAMFERITGEHIH 294

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K +A+VLDG+V +AP I   I  GKA I+G+FT   A  LA +LRAGSLP  + ++EER 
Sbjct: 295 KRMAIVLDGKVHSAPTIQSRIGGGKASITGSFTPTEAQDLAIVLRAGSLPAPVTVLEERT 354

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG  LG +SI  G  A   G + +++ M + YG  GL+AD  +   + + +A L+  GAT
Sbjct: 355 VGPSLGKESIESGILAAAVGGIAVMVVMPLYYGLAGLLADVMLVFTITMLMAGLAAFGAT 414

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGIVL IG++VD+N+L+ ERIREE R+      ++ +GF RA  +I DSN+T +
Sbjct: 415 LTLPGIAGIVLTIGMSVDANVLIFERIREEIRQGLKPLEAVAVGFDRATISIVDSNLTTI 474

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           IA  +L+ FG G VRGFA+T+ L I+ SMFTAI + R      +     K + I
Sbjct: 475 IAAAILYQFGTGPVRGFAVTLSLGIVASMFTAIFVSRTAFGLWLGGNDGKKLSI 528



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + +E I  GI+   +  IA+++ + + +     L A   L+  IT  +   A FG  
Sbjct: 356 GPSLGKESIESGILAAAVGGIAVMVVMPLYYGL-AGLLADVMLVFTITMLMAGLAAFGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG SV+  V++++R+R+ ++         + +    +      V +++
Sbjct: 415 LTLPGIAGIVLTIGMSVDANVLIFERIREEIRQGLK---PLEAVAVGFDRATISIVDSNL 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
              I+   +  +G   +  FA+ ++ GIV +  ++IF++     L++     K 
Sbjct: 472 TTIIAAAILYQFGTGPVRGFAVTLSLGIVASMFTAIFVSRTAFGLWLGGNDGKK 525


>gi|86145579|ref|ZP_01063909.1| protein export protein SecF [Vibrio sp. MED222]
 gi|85836550|gb|EAQ54676.1| protein export protein SecF [Vibrio sp. MED222]
          Length = 315

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 163/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SIL    +I  L T  LN+G+DF GG  + V    P 
Sbjct: 1   MFQILKADKMIDFMRWSKVAFLFSILMIGTAIYTLTTKSLNWGLDFTGGTLIEVGFEEPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +RS LE+   GD + QNF   +  +VRL+ + G    +T   +++           
Sbjct: 61  NLPDIRSALEAEGFGDATVQNFGSAREVMVRLRPRDG-VAGETLGNQILSAIKDGTGEQV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +      +  ++++ SI +TL
Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-EVLNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + V GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITRE 297


>gi|165933479|ref|YP_001650268.1| preprotein translocase subunit SecD [Rickettsia rickettsii str.
           Iowa]
 gi|165908566|gb|ABY72862.1| protein translocase subunit [Rickettsia rickettsii str. Iowa]
          Length = 518

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 193/532 (36%), Positives = 314/532 (59%), Gaps = 26/532 (4%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N   W + L  +     ++ ALPNF+           +P + ++LGLDLRGG+HL+L+
Sbjct: 1   MQNLPKWKIFLSIICTVFAVICALPNFMQVHS-----KFLPHDSVNLGLDLRGGAHLLLD 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           VD D ++N  ++  +D LR   +++ IG  ++   QN I L        + +   +    
Sbjct: 56  VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEKLKLLKKIINK-- 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         ++    E +I +  S++ ++ +++  ++QS+EI+R R+D  G  E 
Sbjct: 114 ----------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233
           T+Q+ G   IL+Q+PGE++PS L+ +LG TAK++FH V  N + +  + G   +      
Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223

Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
              +S G  Y+V  K  + G       +    +  + VV  SF+ +G++ F  +T++N G
Sbjct: 224 GDNESHGEYYVVIKKKVVLGGDKLTTASASFDQNSQAVVAFSFNNLGSKIFGAITKNNTG 283

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K LA+VLD ++L+AP+IN AI  G   I+GNFT+E+A  LA +LRAGSLP  L I+EER+
Sbjct: 284 KRLAIVLDNKLLSAPMINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLRIIEERS 343

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +G +LG+DSI  G  A + G + + +FM+  YG  GL A+ ++ L ++  LALLSL  AT
Sbjct: 344 IGPNLGADSIESGKKAGLIGFIAVCVFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI D+N+T L
Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTL 463

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           I   +L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y K K +
Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515



 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  IA+ +++   +     L A   L L +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCVFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +      +S    I           +  
Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDA 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   +L+ I+    K  ++
Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVQYFKPKKL 515


>gi|315299575|gb|EFU58823.1| protein-export membrane protein SecF [Escherichia coli MS 16-3]
          Length = 338

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 20  YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 79

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    +++K        
Sbjct: 80  PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 139

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGGVFALAHDVIIT 199

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 259 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318

Query: 828 A 828
            
Sbjct: 319 E 319


>gi|291085771|ref|ZP_06354014.2| protein-export membrane protein SecF [Citrobacter youngae ATCC
           29220]
 gi|291069797|gb|EFE07906.1| protein-export membrane protein SecF [Citrobacter youngae ATCC
           29220]
          Length = 338

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 160/301 (53%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS    I ++ ++   G N+G+DF GG  + +   +
Sbjct: 20  YTVEQLNHGRKVWDFMRWDYWAFGISGFLLIAAVVIMGVRGFNWGLDFTGGTVIEITLEK 79

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P D+ V+R  LE     +   QNF    + +VR+    G    Q    +++         
Sbjct: 80  PADMDVMRDALEKAGFVEPLLQNFGSSHDIMVRMPPTEGADGGQVLGSKVLSVINESTNQ 139

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + I++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALMAALISILVYVGFRFEWRLAAGVVIALAHDVIIT 199

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 259 TLHRTLITSGTTLMVILMLFLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318

Query: 828 A 828
            
Sbjct: 319 E 319


>gi|332160722|ref|YP_004297299.1| preprotein translocase subunit SecF [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664952|gb|ADZ41596.1| preprotein translocase subunit SecF [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330863962|emb|CBX74046.1| protein-export membrane protein secF [Yersinia enterocolitica
           W22703]
          Length = 322

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 167/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   G+S+L  + SI ++ T G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEISLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  LE+        QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PADLDQLRDTLEAAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + +I++ + +L+Y+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALIVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|157828752|ref|YP_001494994.1| preprotein translocase subunit SecD [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|157801233|gb|ABV76486.1| preprotein translocase subunit SecD [Rickettsia rickettsii str.
           'Sheila Smith']
          Length = 518

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 193/532 (36%), Positives = 314/532 (59%), Gaps = 26/532 (4%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N   W + L  +     ++ ALPNF+           +P + ++LGLDLRGG+HL+L+
Sbjct: 1   MQNLPKWKIFLSIICTVFAVICALPNFMQVHS-----KFLPHDSVNLGLDLRGGAHLLLD 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           VD D ++N  ++  +D LR   +++ IG  ++   QN I L        + +   +    
Sbjct: 56  VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEKLKPLKKIINK-- 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         ++    E +I +  S++ ++ +++  ++QS+EI+R R+D  G  E 
Sbjct: 114 ----------IDPEIIAEVNENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233
           T+Q+ G   IL+Q+PGE++PS L+ +LG TAK++FH V  N + +  + G   +      
Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223

Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
              +S G  Y+V  K  + G       +    +  + VV  SF+ +G++ F  +T++N G
Sbjct: 224 GDNESHGEYYVVIKKKVVLGGDKLTTASASFDQNSQAVVAFSFNNLGSKIFGAITKNNTG 283

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K LA+VLD ++L+AP+IN AI  G   I+GNFT+E+A  LA +LRAGSLP  L I+EER+
Sbjct: 284 KRLAIVLDNKLLSAPMINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLRIIEERS 343

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +G +LG+DSI  G  A + G + + +FM+  YG  GL A+ ++ L ++  LALLSL  AT
Sbjct: 344 IGPNLGADSIESGKKAGLIGFIAVCVFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI D+N+T L
Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATILDANLTTL 463

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           I   +L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y K K +
Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVQYFKPKKL 515



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 77/178 (43%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  IA+ +++   +     L A   L L +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCVFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +      +S    I           +  
Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATILDA 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   +L+ I+    K  ++
Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAIIITK-LLIDIWVQYFKPKKL 515


>gi|307946885|ref|ZP_07662220.1| protein-export membrane protein SecF [Roseibium sp. TrichSKD4]
 gi|307770549|gb|EFO29775.1| protein-export membrane protein SecF [Roseibium sp. TrichSKD4]
          Length = 319

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 124/295 (42%), Positives = 186/295 (63%), Gaps = 3/295 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L+PD    +FM  R     +SI+  I SI L  T GLNYGIDFKGG  + +      D+
Sbjct: 5   RLVPDNTKFRFMWLRSVSFPLSIVLVIASIALFVTVGLNYGIDFKGGTIVEIKTEGAADI 64

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R++L +L +GD+  Q F GE   L+R++ QPG  +AQ  V+  ++    E       
Sbjct: 65  GKIRTDLGTLNLGDVQVQQFGGEDEVLIRVEEQPGGELAQQAVVGKIRTLFAEDGYDF-- 122

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  E+VGP++S EL + G + V  S +A+L YIW RF+W FA+GAI T   D+  T+G F
Sbjct: 123 RRVEVVGPRVSGELAQAGAIAVAASLLAILFYIWFRFEWQFAVGAILTTANDVIITVGLF 182

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +  ++F+L+++AAVLT+IGYS+ND VVVYDR+R+N++ Y   +   DL+D SIN+TL R
Sbjct: 183 VVLQLDFSLSSIAAVLTIIGYSLNDTVVVYDRIRENLRKY-KKMDLPDLLDLSINQTLSR 241

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +V TS+   ++++ + V+GG VI SF + M FGI++   SSIF+AAP L+ +   
Sbjct: 242 TVLTSVTTLLALISLYVFGGEVIQSFTLAMIFGILIGTYSSIFLAAPFLIILKLR 296


>gi|323491589|ref|ZP_08096768.1| preprotein translocase subunit SecF [Vibrio brasiliensis LMG 20546]
 gi|323314165|gb|EGA67250.1| preprotein translocase subunit SecF [Vibrio brasiliensis LMG 20546]
          Length = 315

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 164/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR   +    SIL    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAENTIDFMRWSKFAFVFSILMIGASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +RS L++   GD + QNF   ++ +VRL+ +  D   +T   +++           
Sbjct: 61  NLEDIRSALDAKGFGDATVQNFGSARDVMVRLRPRD-DMAGETLGNQIISAIKQGTGENV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D+++ SI +TL
Sbjct: 180 VFSMMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFTQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGITKE 297


>gi|332307525|ref|YP_004435376.1| protein-export membrane protein SecD [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332174854|gb|AEE24108.1| protein-export membrane protein SecD [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 614

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 158/529 (29%), Positives = 281/529 (53%), Gaps = 36/529 (6%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N  P +    +  A+    + LGLDLRGG H ++EVD +  VN   +    + RS
Sbjct: 99  YYVAMNLAPDTP--AWLEAIGGAPMKLGLDLRGGVHFLMEVDMNSAVNKSFEDMVSDFRS 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++EGI   ++RQ++  + + F D    +     +               +  +     
Sbjct: 157 ALREEGIRYRTVRQVEGGVEIFFRDQDTLDKAEFFLRNR-----------NRDLVFTEKN 205

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           + +I + +S+  + +   +A++Q++ IIR R++Q+G++E ++Q+ G  RI +QLPG QD 
Sbjct: 206 DLKIVVSMSEQKLAETRDYAVKQNITIIRNRVNQLGVAEPSVQKQGVDRIAVQLPGIQDT 265

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           +R +++L  TA + F  V  ++  +         G   + D  G   L++ K+ ++G H+
Sbjct: 266 ARAKEILNATATLEFRSVDLDHDVRDAVAGRVPAGSELVLDQQGQPQLLKKKIILTGNHI 325

Query: 255 NGATANFDPKTHKPVVDISFDEMGARR-----------------FFEVTRDNIGKPLAVV 297
             A ++ D      V      + G++                   ++ T +       + 
Sbjct: 326 IDANSSADEYGIPQVNISLDSKGGSKMSQFTKDSIGKPMATVFIEYKSTGERDANDKLIF 385

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
              R + +    QA      +I+G  + + A  L+ +LRAG+L   + IVEER VG  LG
Sbjct: 386 EAKREVISIATIQARLGSSFRITGLDSPQEAHNLSLLLRAGALIAPIQIVEERTVGPSLG 445

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPS 416
            ++I  GT AI+ G V +++FM++ Y  +G+VA+ ++ LN+++ + ++S++  ATL+LP 
Sbjct: 446 KENIALGTQAIIWGFVAVLIFMLIYYKAFGVVANLALTLNLVMIVGIMSMIPGATLSLPG 505

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +AGIVL +G+AVD+N+L+ ERIREE R+ +S   ++  G+  A+STI D+NIT  IA ++
Sbjct: 506 MAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIHHGYDSAFSTILDANITTFIAGLI 565

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF  G G ++GF+IT+ + I  SMFTAI + RA++      K +K + I
Sbjct: 566 LFAVGTGPIKGFSITLMIGIATSMFTAIFVTRAVVNAWCGGKPLKKLSI 614



 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 37/175 (21%), Positives = 82/175 (46%), Gaps = 5/175 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP + +E I  G   +I   +A+LI++ I +K  F + A   L L++   +G  ++  G 
Sbjct: 441 GPSLGKENIALGTQAIIWGFVAVLIFMLIYYK-AFGVVANLALTLNLVMIVGIMSMIPGA 499

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             +L  +A ++  +G +V+  V++++R+R+ ++      S +  I    +      +  +
Sbjct: 500 TLSLPGMAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIHHGYDSAFSTILDAN 556

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  FI+ L +   G   I  F+I +  GI  +  ++IF+   ++      +    
Sbjct: 557 ITTFIAGLILFAVGTGPIKGFSITLMIGIATSMFTAIFVTRAVVNAWCGGKPLKK 611


>gi|91209477|ref|YP_539463.1| preprotein translocase subunit SecF [Escherichia coli UTI89]
 gi|110640670|ref|YP_668398.1| preprotein translocase subunit SecF [Escherichia coli 536]
 gi|117622670|ref|YP_851583.1| preprotein translocase subunit SecF [Escherichia coli APEC O1]
 gi|227884583|ref|ZP_04002388.1| preprotein translocase subunit SecF [Escherichia coli 83972]
 gi|237707597|ref|ZP_04538078.1| protein-export membrane protein SecF [Escherichia sp. 3_2_53FAA]
 gi|293403528|ref|ZP_06647619.1| preprotein translocase [Escherichia coli FVEC1412]
 gi|293408555|ref|ZP_06652394.1| predicted protein [Escherichia coli B354]
 gi|293418476|ref|ZP_06660911.1| preprotein translocase SecF subunit [Escherichia coli B088]
 gi|298379140|ref|ZP_06989021.1| preprotein translocase SecF subunit [Escherichia coli FVEC1302]
 gi|300818268|ref|ZP_07098479.1| protein-export membrane protein SecF [Escherichia coli MS 107-1]
 gi|300820353|ref|ZP_07100505.1| protein-export membrane protein SecF [Escherichia coli MS 119-7]
 gi|300900475|ref|ZP_07118642.1| protein-export membrane protein SecF [Escherichia coli MS 198-1]
 gi|300903327|ref|ZP_07121255.1| protein-export membrane protein SecF [Escherichia coli MS 84-1]
 gi|300918212|ref|ZP_07134818.1| protein-export membrane protein SecF [Escherichia coli MS 115-1]
 gi|300924128|ref|ZP_07140120.1| protein-export membrane protein SecF [Escherichia coli MS 182-1]
 gi|300930297|ref|ZP_07145710.1| protein-export membrane protein SecF [Escherichia coli MS 187-1]
 gi|300936396|ref|ZP_07151324.1| protein-export membrane protein SecF [Escherichia coli MS 21-1]
 gi|300947941|ref|ZP_07162088.1| protein-export membrane protein SecF [Escherichia coli MS 116-1]
 gi|300957972|ref|ZP_07170138.1| protein-export membrane protein SecF [Escherichia coli MS 175-1]
 gi|300988039|ref|ZP_07178519.1| protein-export membrane protein SecF [Escherichia coli MS 45-1]
 gi|300997404|ref|ZP_07181744.1| protein-export membrane protein SecF [Escherichia coli MS 200-1]
 gi|301025426|ref|ZP_07188977.1| protein-export membrane protein SecF [Escherichia coli MS 69-1]
 gi|301049609|ref|ZP_07196560.1| protein-export membrane protein SecF [Escherichia coli MS 185-1]
 gi|301301556|ref|ZP_07207691.1| protein-export membrane protein SecF [Escherichia coli MS 124-1]
 gi|301330731|ref|ZP_07223333.1| protein-export membrane protein SecF [Escherichia coli MS 78-1]
 gi|301647329|ref|ZP_07247142.1| protein-export membrane protein SecF [Escherichia coli MS 146-1]
 gi|309794867|ref|ZP_07689288.1| protein-export membrane protein SecF [Escherichia coli MS 145-7]
 gi|331640925|ref|ZP_08342060.1| protein-export membrane protein SecF [Escherichia coli H736]
 gi|331645582|ref|ZP_08346686.1| protein-export membrane protein SecF [Escherichia coli M605]
 gi|331651342|ref|ZP_08352367.1| protein-export membrane protein SecF [Escherichia coli M718]
 gi|331676076|ref|ZP_08376788.1| protein-export membrane protein SecF [Escherichia coli H591]
 gi|332281555|ref|ZP_08393968.1| Protein-export membrane protein secF [Shigella sp. D9]
 gi|26106812|gb|AAN78997.1|AE016756_180 Protein-export membrane protein secF [Escherichia coli CFT073]
 gi|1773093|gb|AAB40165.1| protein-export membrane protein secF [Escherichia coli]
 gi|91071051|gb|ABE05932.1| protein-export membrane protein SecF [Escherichia coli UTI89]
 gi|110342262|gb|ABG68499.1| protein-export membrane protein SecF [Escherichia coli 536]
 gi|115511794|gb|ABI99868.1| export membrane protein SecF [Escherichia coli APEC O1]
 gi|226898807|gb|EEH85066.1| protein-export membrane protein SecF [Escherichia sp. 3_2_53FAA]
 gi|227838669|gb|EEJ49135.1| preprotein translocase subunit SecF [Escherichia coli 83972]
 gi|291325004|gb|EFE64419.1| preprotein translocase SecF subunit [Escherichia coli B088]
 gi|291429381|gb|EFF02401.1| preprotein translocase [Escherichia coli FVEC1412]
 gi|291471733|gb|EFF14216.1| predicted protein [Escherichia coli B354]
 gi|298280253|gb|EFI21757.1| preprotein translocase SecF subunit [Escherichia coli FVEC1302]
 gi|300298602|gb|EFJ54987.1| protein-export membrane protein SecF [Escherichia coli MS 185-1]
 gi|300304223|gb|EFJ58743.1| protein-export membrane protein SecF [Escherichia coli MS 200-1]
 gi|300315346|gb|EFJ65130.1| protein-export membrane protein SecF [Escherichia coli MS 175-1]
 gi|300355956|gb|EFJ71826.1| protein-export membrane protein SecF [Escherichia coli MS 198-1]
 gi|300396028|gb|EFJ79566.1| protein-export membrane protein SecF [Escherichia coli MS 69-1]
 gi|300404622|gb|EFJ88160.1| protein-export membrane protein SecF [Escherichia coli MS 84-1]
 gi|300407591|gb|EFJ91129.1| protein-export membrane protein SecF [Escherichia coli MS 45-1]
 gi|300414597|gb|EFJ97907.1| protein-export membrane protein SecF [Escherichia coli MS 115-1]
 gi|300419581|gb|EFK02892.1| protein-export membrane protein SecF [Escherichia coli MS 182-1]
 gi|300452493|gb|EFK16113.1| protein-export membrane protein SecF [Escherichia coli MS 116-1]
 gi|300458502|gb|EFK21995.1| protein-export membrane protein SecF [Escherichia coli MS 21-1]
 gi|300461869|gb|EFK25362.1| protein-export membrane protein SecF [Escherichia coli MS 187-1]
 gi|300527138|gb|EFK48207.1| protein-export membrane protein SecF [Escherichia coli MS 119-7]
 gi|300529159|gb|EFK50221.1| protein-export membrane protein SecF [Escherichia coli MS 107-1]
 gi|300843053|gb|EFK70813.1| protein-export membrane protein SecF [Escherichia coli MS 124-1]
 gi|300843392|gb|EFK71152.1| protein-export membrane protein SecF [Escherichia coli MS 78-1]
 gi|301074525|gb|EFK89331.1| protein-export membrane protein SecF [Escherichia coli MS 146-1]
 gi|308121520|gb|EFO58782.1| protein-export membrane protein SecF [Escherichia coli MS 145-7]
 gi|315256233|gb|EFU36201.1| protein-export membrane protein SecF [Escherichia coli MS 85-1]
 gi|315289876|gb|EFU49266.1| protein-export membrane protein SecF [Escherichia coli MS 110-3]
 gi|315294212|gb|EFU53563.1| protein-export membrane protein SecF [Escherichia coli MS 153-1]
 gi|324010086|gb|EGB79305.1| protein-export membrane protein SecF [Escherichia coli MS 57-2]
 gi|324010669|gb|EGB79888.1| protein-export membrane protein SecF [Escherichia coli MS 60-1]
 gi|324016685|gb|EGB85904.1| protein-export membrane protein SecF [Escherichia coli MS 117-3]
 gi|331037723|gb|EGI09943.1| protein-export membrane protein SecF [Escherichia coli H736]
 gi|331045744|gb|EGI17870.1| protein-export membrane protein SecF [Escherichia coli M605]
 gi|331051083|gb|EGI23135.1| protein-export membrane protein SecF [Escherichia coli M718]
 gi|331076134|gb|EGI47416.1| protein-export membrane protein SecF [Escherichia coli H591]
 gi|332103907|gb|EGJ07253.1| Protein-export membrane protein secF [Shigella sp. D9]
          Length = 338

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 20  YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 79

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    +++K        
Sbjct: 80  PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 139

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 199

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 259 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318

Query: 828 A 828
            
Sbjct: 319 E 319


>gi|295100807|emb|CBK98352.1| protein-export membrane protein SecF [Faecalibacterium prausnitzii
           L2-6]
          Length = 777

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 153/763 (20%), Positives = 284/763 (37%), Gaps = 60/763 (7%)

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           V +    V        K        +  +++    ++        +E +  +I  R+  +
Sbjct: 28  VAVKYGDVTKTYIKGAKDIRFGVDIKGGVNVTFVPSDGYDATDDQLEAAQLVIENRLVAL 87

Query: 175 GISESTIQRLGSHRILIQLPGEQ------DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
            +++  +    +   LI     Q      DP    + +GTTA ++F +    + +     
Sbjct: 88  NVTDYELYVDNNSDSLILEFPWQSGETEFDPEAAIEEIGTTAYLTFREGSSADGELVLDG 147

Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
            +     +                              K   + +     A      T  
Sbjct: 148 SMVESAAAQYGPVNGSSSE--------------YYVALKFTDEGAKAFGDATTRLYQTGG 193

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
            I   L             I        +  S  FT E    +A  + +GSLP  L +  
Sbjct: 194 TISIWLDDENVSTASVNAAITDGSAIITSSASSPFTQEDVVKMARQINSGSLPFALTVDS 253

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
              +   LG +S+     A V    LI++ M  LY   G +A  ++   V  TLA +S  
Sbjct: 254 YSTISPSLGENSLSAMVLAGVIAFALIMVLMTALYRLPGFLACIALAGQVAATLAFVSGY 313

Query: 409 G-----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
                  TLTLP IAGI+L IG+ VD+N++  ERI+EE R  +S+  +L  GF+R  + I
Sbjct: 314 FPVFESFTLTLPGIAGIILAIGMGVDANVITAERIKEELRSGKSLDGALKSGFARGLTPI 373

Query: 464 FDSNITALIATVVLFFFGGGAV----------------------RGFAITMGLSILISMF 501
            D N+T +I  +VL    G +                         F  T+   +L++  
Sbjct: 374 IDGNVTIVIVAIVLMGAFGPSDGFFAKALHFVFFAFGPSTAGTIYAFGYTLLTGVLLNFV 433

Query: 502 TAISIVRAMMIFIIRYKKMKSID-INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
             I   R M+      K ++        +      +   + F+  R   +  S       
Sbjct: 434 FGIFATRIMIRGAASIKALRDPRLYGADAPGKTPAEKKQVNFVGLRKRFLTFSACLMAAI 493

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE--KNFL 618
           +      G++   +F GG  + +      ++SVV+         +               
Sbjct: 494 VLCAVVLGVHLDTEFTGGAMITLSYENSFEMSVVQKAASEALGSNGLTLQTGENVATGEQ 553

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITE--IVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                 PG     T  ++ +   + E          +   V   +  + ++K +V V+ +
Sbjct: 554 TLKISMPGTETVTTDEVQTLLDSLNESCPDNSFAQLSLSNVSAAMGTKFLQKSLVAVVFA 613

Query: 677 AIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + +L YI  RFK        + A+  L+ D+    G F L     +   +AA+LT++GY
Sbjct: 614 LVLILAYIAYRFKKIGGLTGGMMAVLALLNDLMVVFGTFVLLRAPLDGNFIAAMLTILGY 673

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---- 788
           S+ND VVVYDR+R+N  L      F++L++ SIN++  R++ T++   +++  M +    
Sbjct: 674 SINDTVVVYDRIRENRGLLGKKAGFQELVNHSINQSARRTIITTVTTVMALAVMCIVSKL 733

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +G   I +FA P+  G++    +S+ ++    +   + +    
Sbjct: 734 YGLDSIFTFAFPLMMGMLSGVYTSLCVSTSAWVAWSERKNAKK 776


>gi|292492395|ref|YP_003527834.1| protein-export membrane protein SecD [Nitrosococcus halophilus Nc4]
 gi|291580990|gb|ADE15447.1| protein-export membrane protein SecD [Nitrosococcus halophilus Nc4]
          Length = 618

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 177/522 (33%), Positives = 287/522 (54%), Gaps = 36/522 (6%)

Query: 32  LDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
               PS +       ++LGLDLRGG H ++EVD +  V    + Y ++LRS L++  +  
Sbjct: 105 APATPSWLRTIGGLPMNLGLDLRGGVHFLMEVDMEAAVQQAEERYVEDLRSLLRENRLRY 164

Query: 89  FSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
            S+ R     + + F ++  ++     +             D     +       + I L
Sbjct: 165 LSIGRLGAGGVEIKFRNTEQRDQAETLIHDEY--------FDLLLQPVEEGGSPRLEITL 216

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           S+    ++   A++Q++  +R RI+++G++E TIQ+ G +RI++QLPG QD +R +++LG
Sbjct: 217 SEEEKREIQRLALQQNITTLRNRINELGVAEPTIQQQGRNRIVVQLPGVQDTARAKEILG 276

Query: 208 TTAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            TA + F  V          +     G R   +  G   L++ +V ++G H+  A +  D
Sbjct: 277 ATATLEFRLVDVTHEVQRAVEGRVPAGSRLYYERGGAPILLKKRVILTGDHIIDAASGID 336

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVL 303
            ++  P V ++ D  GAR F +VT +NIGKP+                    +      +
Sbjct: 337 QQSGSPAVFVTLDGQGARLFSKVTGENIGKPMAVVFIETKTETRMEEGESVKLHRRVPEV 396

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 +   S + QI+G  + E A  LA +LRAG+L   ++I+EER +G  LG D+I K
Sbjct: 397 INVATIRDQLSKRFQITGLDSTEEARNLALLLRAGALAAPIDIIEERTIGPSLGQDNIEK 456

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  +++ G  L+++FM + Y  +GL+AD ++ +N++L ++LLSLL ATLTLP IAGIVL 
Sbjct: 457 GFQSVLIGFALVLVFMALYYRVFGLIADLALTVNLVLLVSLLSLLQATLTLPGIAGIVLT 516

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+ +RIREE R   S   S++ G++ A STI D+NIT LIA +VLF FG G
Sbjct: 517 VGMAVDANVLIFQRIREELRNGNSPQASIEAGYANALSTIADANITTLIAAIVLFGFGTG 576

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            ++GFA+T+ L IL SMFTAI   RA++  I   ++   + I
Sbjct: 577 PIKGFAVTLSLGILTSMFTAIIGTRAVINLIYGGRRKVRLAI 618



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 98/253 (38%), Gaps = 4/253 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G     V      +  +       L        N    ++ L +     G    +     
Sbjct: 365 GKPMAVVFIETKTETRMEEGESVKLHRRVPEVINVATIRDQLSKRFQITGLDSTEEARNL 424

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +   +     I     +GP + ++ I KG   V+I    +L+++ + ++  F L A
Sbjct: 425 ALLLRAGALAAPIDIIEERTIGPSLGQDNIEKGFQSVLIGFALVLVFMALYYRV-FGLIA 483

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L +++   +   +L      L  +A ++  +G +V+  V+++ R+R+ ++      S
Sbjct: 484 DLALTVNLVLLVSLLSLLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREELR---NGNS 540

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +  I+      L      ++   I+ + +  +G   I  FA+ ++ GI+ +  ++I   
Sbjct: 541 PQASIEAGYANALSTIADANITTLIAAIVLFGFGTGPIKGFAVTLSLGILTSMFTAIIGT 600

Query: 817 APILLFIYDWRAK 829
             ++  IY  R K
Sbjct: 601 RAVINLIYGGRRK 613


>gi|148979592|ref|ZP_01815597.1| protein export protein SecF [Vibrionales bacterium SWAT-3]
 gi|145961677|gb|EDK26974.1| protein export protein SecF [Vibrionales bacterium SWAT-3]
          Length = 315

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 165/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR       +SIL    +I  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKADKMIDFMRWSKVAFVLSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L  +RS LE+   GD + QNF   ++ +VRL+ + G    +T   +++           
Sbjct: 61  HLPDIRSALEAEGFGDATVQNFGSARDVMVRLRPRDG-VAGETLGNQILSAIEKGTGEQV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +      +  ++++ SI +TL
Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-EVLNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + V GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITRE 297


>gi|109897555|ref|YP_660810.1| preprotein translocase subunit SecD [Pseudoalteromonas atlantica
           T6c]
 gi|109699836|gb|ABG39756.1| protein-export membrane protein SecD [Pseudoalteromonas atlantica
           T6c]
          Length = 614

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 159/529 (30%), Positives = 281/529 (53%), Gaps = 36/529 (6%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N  P +    +  A+    + LGLDLRGG H ++EVD +  VN   +    + RS
Sbjct: 99  YYVAMNLAPDTP--AWLEAIGGAPMKLGLDLRGGVHFLMEVDMNSAVNKSFEDMVSDFRS 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++EGI   ++RQ++  + + F D    +     +               +  +     
Sbjct: 157 ALREEGIRYRTVRQVEGGVEIFFRDQDTLDKAEFFLRNR-----------NRDLVFTEKN 205

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           + +I + +S+  + +   +A++Q++ IIR R++Q+G++E ++Q+ G  RI +QLPG QD 
Sbjct: 206 DLKIVVSMSEQKLAETRDYAVKQNITIIRNRVNQLGVAEPSVQKQGVDRIAVQLPGIQDT 265

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           +R +++L  TA + F  V  ++  +         G   + D  G   L++ K+ ++G H+
Sbjct: 266 ARAKEILNATATLEFRSVDLDHDVRDAVAGRVPAGSELVLDQQGQPQLLKKKIILTGNHI 325

Query: 255 NGATANFDPKTHKPVVDISFDEMGARR-----------------FFEVTRDNIGKPLAVV 297
             A ++ D      V      + G++                   ++ T +       + 
Sbjct: 326 IDANSSADEYGIPQVNISLDSKGGSKMSQFTKDSIGKPMATVFIEYKSTGERDANDKLIF 385

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
              R + +    QA      +I+G  + + A  L+ +LRAG+L   + IVEER VG  LG
Sbjct: 386 EAKREVISIATIQARLGSSFRITGLDSPQEAHNLSLLLRAGALIAPIQIVEERTVGPSLG 445

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPS 416
            ++I  GT AI+ G V +++FM++ Y  +GLVA+ ++ LN+++ + ++S++  ATL+LP 
Sbjct: 446 KENIALGTQAIIWGFVAVLIFMLIYYKAFGLVANLALTLNLVMIVGIMSMIPGATLSLPG 505

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +AGIVL +G+AVD+N+L+ ERIREE R+ +S   ++  G+  A+STI D+NIT  IA ++
Sbjct: 506 MAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIHHGYDSAFSTILDANITTFIAGLI 565

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF  G G ++GF+IT+ + I  SMFTAI + RA++      K +K + I
Sbjct: 566 LFAVGTGPIKGFSITLMIGIATSMFTAIFVTRAVVNAWCGGKPLKKLSI 614



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/175 (21%), Positives = 82/175 (46%), Gaps = 5/175 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP + +E I  G   +I   +A+LI++ I +K  F L A   L L++   +G  ++  G 
Sbjct: 441 GPSLGKENIALGTQAIIWGFVAVLIFMLIYYK-AFGLVANLALTLNLVMIVGIMSMIPGA 499

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             +L  +A ++  +G +V+  V++++R+R+ ++      S +  I    +      +  +
Sbjct: 500 TLSLPGMAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIHHGYDSAFSTILDAN 556

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  FI+ L +   G   I  F+I +  GI  +  ++IF+   ++      +    
Sbjct: 557 ITTFIAGLILFAVGTGPIKGFSITLMIGIATSMFTAIFVTRAVVNAWCGGKPLKK 611


>gi|261341003|ref|ZP_05968861.1| protein-export membrane protein SecF [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316867|gb|EFC55805.1| protein-export membrane protein SecF [Enterobacter cancerogenus
           ATCC 35316]
          Length = 323

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 165/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS    I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVWDFMRWDYWAFGISGFLLILSIAIMGVKGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PVD+  +R +L+     +   QNF   ++ +VR+      + +Q    ++V         
Sbjct: 65  PVDMDQMRESLQKAGFEEPLLQNFGSSRDIMVRMPPVHDANGSQELGSKVVHVINETTSQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++++ I++LIY+  RF+W  A G +  L  D+  T
Sbjct: 125 NATVKRIEFVGPSVGADLAQTGAMALMVALISILIYVGFRFEWRLAAGVVIALAHDVVIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 MGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|34496800|ref|NP_901015.1| preprotein translocase subunit SecD [Chromobacterium violaceum ATCC
           12472]
 gi|34102655|gb|AAQ59020.1| protein-export membrane protein secD [Chromobacterium violaceum
           ATCC 12472]
          Length = 615

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 176/522 (33%), Positives = 281/522 (53%), Gaps = 33/522 (6%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL A P++L              N + LGLDLRGG H +LEVD     +  ++ Y
Sbjct: 100 IIALNLLPASPSWLASLHA---------NPMFLGLDLRGGVHFLLEVDMKAATDKAMERY 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + +LR  LK + +   S+++  N + +   D    ++  D V          L       
Sbjct: 151 AGDLRRELKNKQVRYGSIKRNGNTLEVQLRDEDTLKSAQDVV-------YRMLPSLA--- 200

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           +       ++ + L    I ++ + A++Q++  +  R++++G +E  IQ+ G +RI++QL
Sbjct: 201 VRSDDASNKLLLTLKPEEITKIQNDAVKQNITTLHNRVNELGTTEPIIQQNGPNRIVVQL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNN---------SKKGFMFGVRFLRDSDGNQYLVE 244
           PG QD +R + ++G TA +  H V  +          +       +        ++ L++
Sbjct: 261 PGIQDTARAKDIIGRTATLEVHMVEDDQGKVAEALAGNVPAGYELLDEATSRGQSKILLK 320

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL----DG 300
             VE++G ++N A  +FD     P V I+ D  GA  F ++T +N+GK +A+VL      
Sbjct: 321 SDVELTGDNINDAQPSFDQFG-APAVSINLDSTGAAIFRQLTAENVGKRMAMVLVEKGRK 379

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            V+TAPVI   I  G+ +ISG+     A   A +LRAGSL   +NI+EER +G  LG ++
Sbjct: 380 EVVTAPVIRTEIGGGRVEISGSMNSAEANDTALLLRAGSLAAPMNIIEERTIGPSLGKEN 439

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I KG  A + G   I +FM++ YG +G+ +  S+ +NV L +ALLS+L ATLTLP IA I
Sbjct: 440 IEKGFHATLWGFAAIAVFMVIYYGLFGVFSSLSLAINVFLLIALLSMLQATLTLPGIAAI 499

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+A+D+N+L+NERIREE R       ++  G+  A+ TI DSN+T LIA + L  F
Sbjct: 500 ALALGMAIDANVLINERIREELRNGMPPHSAIHAGYDHAWHTILDSNVTTLIAGLALMIF 559

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G G VRGFAI   L IL SMF+A+ + R ++      ++  +
Sbjct: 560 GSGPVRGFAIVHCLGILTSMFSAVLVSRGLVHLWYGRRRKLT 601



 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 86/208 (41%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G   +       +  +   +     I     +GP + +E I KG    +    A+ 
Sbjct: 396 VEISGSMNSAEANDTALLLRAGSLAAPMNIIEERTIGPSLGKENIEKGFHATLWGFAAIA 455

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ I +   F + +  +L +++   +   ++      L  +AA+   +G +++  V++ 
Sbjct: 456 VFMVIYYGL-FGVFSSLSLAINVFLLIALLSMLQATLTLPGIAAIALALGMAIDANVLIN 514

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +     I    +      + +++   I+ L + ++G   +  FAI  
Sbjct: 515 ERIREELR---NGMPPHSAIHAGYDHAWHTILDSNVTTLIAGLALMIFGSGPVRGFAIVH 571

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  S++ ++  ++   Y  R K
Sbjct: 572 CLGILTSMFSAVLVSRGLVHLWYGRRRK 599



 Score = 37.7 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 14/33 (42%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34
          R   W  ++  +   I  +  LPNF  ++   +
Sbjct: 3  RYPLWKYLVIVVALIISAIYTLPNFYGETPAVQ 35


>gi|269103291|ref|ZP_06155988.1| protein-export membrane protein SecF [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163189|gb|EEZ41685.1| protein-export membrane protein SecF [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 289

 Score =  222 bits (565), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 92/273 (33%), Positives = 153/273 (56%), Gaps = 2/273 (0%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
               SI  + T GLN+G+DF GG  + V    P +L  +R  LE    GD   QNF   +
Sbjct: 1   MVSLSIATVATKGLNWGLDFTGGTLIEVSFENPANLGQIREALEKADFGDAVVQNFGTAR 60

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
           + +VRLQ + G    +    +++            ++  E VGP +  EL   G + ++I
Sbjct: 61  DVMVRLQPRDG-VKGEVLGGQIISALKEGTGQNVEMRRIEFVGPNVGDELAEAGGLAILI 119

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S + +L+Y+ +RF+W  A GA+ +L  D+  T+G F+   +E +LT VAA+LT++GYS+N
Sbjct: 120 SLLCILMYVSLRFEWRLAAGAVMSLAHDVIITVGIFSFLQVEVDLTIVAALLTVVGYSLN 179

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           D +VV+DR+R+N +      +  D+I+ SI++TL R++ TS      V+ + + GG++I 
Sbjct: 180 DTIVVFDRIRENFRKMRKG-NASDIINSSISQTLSRTLITSGTTLFVVIALFLKGGTMIH 238

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            FA+ +  GI V   SSI++A+ + L +   R 
Sbjct: 239 GFAMALLIGITVGTYSSIYVASALALKLGITRE 271


>gi|330993542|ref|ZP_08317477.1| Protein-export membrane protein secF [Gluconacetobacter sp. SXCC-1]
 gi|329759572|gb|EGG76081.1| Protein-export membrane protein secF [Gluconacetobacter sp. SXCC-1]
          Length = 317

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 124/309 (40%), Positives = 183/309 (59%), Gaps = 4/309 (1%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +        +P    I FMR RF G+  S + SI S+ L F  GL  G+DF+GGI +   
Sbjct: 2   MFDRPLLRFVPRGTKINFMRGRFIGLATSAVLSIASLILFFHPGLTLGLDFRGGIVVEAR 61

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT- 643
              P D + +R+ L +  +     Q+F G  + L+RL   P          + +   +  
Sbjct: 62  TQGPADFNAIRAALNAQHVNAAGVQSFGGPDDVLIRLDTPPDSEPDHEARTQAMVDSVRH 121

Query: 644 --EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
               +P + +   + VG  +SREL R G++ + IS + +L YIW RF+W FA+ A+ TL+
Sbjct: 122 AIATLPGAQVLRADAVGASVSRELFRNGMLALGISLLMILAYIWFRFEWEFAVSAVVTLV 181

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           LD+TK +GF  +   EF+L  VAA+LT++GYS NDKVVVYDR+R+N++ Y T +   +LI
Sbjct: 182 LDLTKAIGFLVITHFEFDLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRT-MPLAELI 240

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           D SINETL R++ TS   F++ LP+A++GG+ +  FA  M FGIVV  SSSIFIAAP+LL
Sbjct: 241 DLSINETLSRTLGTSCTVFLAALPLALFGGASLSGFAWVMLFGIVVGTSSSIFIAAPLLL 300

Query: 822 FIYDWRAKN 830
            + + R + 
Sbjct: 301 LMGEKRLRR 309


>gi|270263544|ref|ZP_06191813.1| hypothetical protein SOD_e01680 [Serratia odorifera 4Rx13]
 gi|270042428|gb|EFA15523.1| hypothetical protein SOD_e01680 [Serratia odorifera 4Rx13]
          Length = 322

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 166/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   GIS+L  + SI  +   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYVAFGISLLLLVASIATMSVRGFNWGLDFTGGTVIEISLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P +L ++R  LE     D   QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PANLDLMRDTLEKAGFQDPIIQNFGSSRDVMVRMPPATGT-AGQELGNKVIGVINGAVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  EL + G + ++++ I +LIY+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NATVKRIEFVGPSVGSELAQTGGMALLVALICILIYVGFRFEWRLALGAVIALAHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTLMTSGTTLMVVLMLYIFGGAMLQGFSLAMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|222112518|ref|YP_002554782.1| preprotein translocase subunit SecD [Acidovorax ebreus TPSY]
 gi|221731962|gb|ACM34782.1| protein-export membrane protein SecD [Acidovorax ebreus TPSY]
          Length = 632

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 168/530 (31%), Positives = 275/530 (51%), Gaps = 22/530 (4%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++ R P  +       + LGLDLRGG H +L+VD    +   ++ Y+ +LRS L+++ I
Sbjct: 109 NLVSRSPDWLTALHARPMYLGLDLRGGVHFMLQVDMQAAITKKIESYAGDLRSALREKNI 168

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +    + +   D        + +             D             +   
Sbjct: 169 RHGGIGREGQAVDIRVRDEATLTAARNLIADQF--------PDLAVVSSADGDGMRLRAT 220

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    + +V   A++Q+M  +  RI+++G++E  IQ+ G  RI++QLPG QD ++ + +L
Sbjct: 221 IKPEALRKVQEQALKQNMVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDIL 280

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGIHLNGATA 259
           G TA +    V      +    G   +        D +G   +V+ +V ++G +L  A  
Sbjct: 281 GRTATLEVRMVDEGTEARAAEMGTGPVPFGAEKYLDRNGQAVIVKKQVVLTGENLTDAQP 340

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSG 315
            FD +T +P V+++ D  G+R F ++TR+N+GK +         G V+TAPVI   I  G
Sbjct: 341 GFDGQTQEPTVNLTLDAKGSRIFKDITRENVGKRMAIVLFEKGKGEVVTAPVIRSEIGGG 400

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           + QISG  T   A   A +LRAGSL   + I+EE  +G  LG+D+I +G  ++V G+V I
Sbjct: 401 RVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIDRGIQSVVWGMVAI 460

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
             FM V Y  +G+ +  ++ +NV+L +A+LS+L ATLTLP IA + L +G+A+DSN+L+N
Sbjct: 461 AAFMCVYYMLFGVFSTIALGVNVLLLIAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERIREE R   +   ++  G+ RA++TI DSN+T LIA + L  FG G VRGFA+   + 
Sbjct: 521 ERIREELRAGVAPQAAIATGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVHCIG 580

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           IL SMF+A+   R ++      KK                +  ++     
Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGRKKKLKSVSIGQVWKPEGDEHRSVAARGN 630



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 86/212 (40%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I +GI  V+   +A+ 
Sbjct: 402 VQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNIDRGIQSVVWGMVAIA 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + +   F + +   L +++   +   ++      L  +AA+   +G +++  V++ 
Sbjct: 462 AFMCVYY-MLFGVFSTIALGVNVLLLIAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     ++ +  I           + +++   I+ L +  +G   +  FA+  
Sbjct: 521 ERIREELRA---GVAPQAAIATGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++F +  ++   Y  + K   +
Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGRKKKLKSV 609



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 30/118 (25%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  ++  IG L  LPNF  ++                           ++V 
Sbjct: 3   RYPVWKYAILVIVLLIGALYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                          +   LK   +   S+    N +   F     +    D +   L
Sbjct: 38  SAKATLKVDAAVQQRVEDALKAANVASDSIVFDGNSVRARFDTPDNQLKAKDAIEKAL 95


>gi|145632483|ref|ZP_01788217.1| preprotein translocase subunit SecF [Haemophilus influenzae 3655]
 gi|145635145|ref|ZP_01790850.1| preprotein translocase subunit SecF [Haemophilus influenzae PittAA]
 gi|229844942|ref|ZP_04465079.1| preprotein translocase subunit SecF [Haemophilus influenzae 6P18H1]
 gi|144986678|gb|EDJ93230.1| preprotein translocase subunit SecF [Haemophilus influenzae 3655]
 gi|145267566|gb|EDK07565.1| preprotein translocase subunit SecF [Haemophilus influenzae PittAA]
 gi|229812076|gb|EEP47768.1| preprotein translocase subunit SecF [Haemophilus influenzae 6P18H1]
          Length = 324

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 155/309 (50%), Gaps = 5/309 (1%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                        +       +FM+ R WG  +S L  + S+  + T G N+G+DF GG+
Sbjct: 6   KDKDGHFIREINGIKLPFPLTEFMKVRKWGYILSALLMVISLFFIITKGFNWGLDFTGGV 65

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                 ++  +L  +RS L    I     Q     ++ ++RL     DS     + E VK
Sbjct: 66  VFDTHFSQSANLEQIRSKLHENGIESPVVQTTGSVQDVMIRLPASNNDST----IGEHVK 121

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +     I++ E VGP +  EL +  +   + +   +LIY+  RF+W    G+I +
Sbjct: 122 SMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSIAS 181

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  D+  TLG F+   IE +LT VAA+L+++GYS+ND +VV+DR+R+N +     +   D
Sbjct: 182 LAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-RRLDTID 240

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +ID S+ +TL R++ TS+   + V+ +  +GG  I +F++ +  GI     SSIF+A  I
Sbjct: 241 IIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIAI 300

Query: 820 LLFIYDWRA 828
              +   R 
Sbjct: 301 AYDVGLRRE 309


>gi|325203700|gb|ADY99153.1| protein-export membrane protein SecD [Neisseria meningitidis
           M01-240355]
          Length = 617

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I ++
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLM 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|218708624|ref|YP_002416245.1| preprotein translocase subunit SecF [Vibrio splendidus LGP32]
 gi|218321643|emb|CAV17595.1| Preprotein translocase subunit SecF [Vibrio splendidus LGP32]
          Length = 315

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 163/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SIL    +I  L T  LN+G+DF GG  + V    P 
Sbjct: 1   MFQILKADKMIDFMRWSKVAFLFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEEPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +RS LE+   GD + QNF   +  +VRL+ + G    +T   +++           
Sbjct: 61  NLPDIRSALEAEGFGDATVQNFGSAREVMVRLRPRDG-VAGETLGNQILSAIKDGTGEQV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +      +  ++++ SI +TL
Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-EVLNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + V GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFVQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITRE 297


>gi|123443370|ref|YP_001007344.1| preprotein translocase subunit SecF [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090331|emb|CAL13197.1| protein-export membrane protein SecF [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 322

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 167/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   G+S+L  + SI ++ T G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEISLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  LE+        QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PADLDQLRDTLEAAGFESPILQNFGSTRDVMVRMPPATGT-AGQELGNKVISVINESVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + +I++ + +L+Y+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALIVALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|255022135|ref|ZP_05294138.1| protein-export membrane protein SecD [Acidithiobacillus caldus ATCC
           51756]
 gi|254968399|gb|EET25958.1| protein-export membrane protein SecD [Acidithiobacillus caldus ATCC
           51756]
          Length = 594

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 193/505 (38%), Positives = 310/505 (61%), Gaps = 20/505 (3%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           S     P  +       ++LGLDLRGG +L+L+VD D  +   L+   + LRSFL+++ +
Sbjct: 101 SQKPAEPDWLAALGAQPVNLGLDLRGGVYLLLKVDTDAVIKHALEEDRNRLRSFLRRKDL 160

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++ +   + +++  A     E +A +    +      L + P+   ++  +      
Sbjct: 161 QYLNVEQTGPDTLSVQMA----SEQLAREAQAAIAREFPDLALAPEGQGILQAS------ 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            L+     ++   A++Q++ +IR RID++G++E  IQR G   I +QLPG QD  R +++
Sbjct: 211 -LTPAAAQKMQDDALQQAIVVIRNRIDELGVAEPQIQRQGKEHIAVQLPGVQDTQRAKEI 269

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260
           +G+TA++ F  V         + G     D+     DG  Y++  +  ++G +LNGA+A 
Sbjct: 270 IGSTAQLEFKMVAERVDMAAALKGQIPPGDALYYGVDGTPYVLHKETVLTGRYLNGASAG 329

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
            D  T + +V+ISFD +G R F ++T  ++G+ +A++LD +V+TAPVI +AI  G+AQI 
Sbjct: 330 IDNNTGQAIVNISFDSVGTRIFGDLTSKHVGQRMAILLDNKVVTAPVIREAITGGRAQID 389

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
           G  +++ A  +A  LRAG+LP  +++ EER VG  LG DSI+ G  A++ G++ +VLFM 
Sbjct: 390 GFSSLKDASNVAIELRAGALPAPVHVSEERTVGPTLGQDSIHDGVMAVIFGMLFVVLFMT 449

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
             Y  +GL+AD +I +NV+  LA+LSL+G TLTLP IAGIVL IGLAVD+N+LV ERIRE
Sbjct: 450 FYYRAFGLIADLAILVNVLFILAVLSLMGGTLTLPGIAGIVLKIGLAVDANVLVFERIRE 509

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E R+  S   S+D GF RA++TI DSNIT LIA + LF FG GA++GFA+ + + +L+SM
Sbjct: 510 ELRRGMSPRASIDAGFKRAFATIVDSNITVLIAALTLFQFGTGAIKGFALVLTIGVLVSM 569

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDI 525
           FTA  + R ++ F +  ++++ + I
Sbjct: 570 FTATLMSRGIVEFALGRRRVQKLWI 594



 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 40/204 (19%), Positives = 94/204 (46%), Gaps = 4/204 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G S  +      ++ +   +     +     VGP + ++ I  G++ VI   + +++++
Sbjct: 389 DGFSSLKDASNVAIELRAGALPAPVHVSEERTVGPTLGQDSIHDGVMAVIFGMLFVVLFM 448

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              ++  F L A   +++++   L   +L G    L  +A ++  IG +V+  V+V++R+
Sbjct: 449 TFYYR-AFGLIADLAILVNVLFILAVLSLMGGTLTLPGIAGIVLKIGLAVDANVLVFERI 507

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++     +S R  ID          V +++   I+ L +  +G   I  FA+ +  G
Sbjct: 508 REELR---RGMSPRASIDAGFKRAFATIVDSNITVLIAALTLFQFGTGAIKGFALVLTIG 564

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           ++V+  ++  ++  I+ F    R 
Sbjct: 565 VLVSMFTATLMSRGIVEFALGRRR 588


>gi|163802458|ref|ZP_02196351.1| protein export protein SecF [Vibrio sp. AND4]
 gi|159173759|gb|EDP58574.1| protein export protein SecF [Vibrio sp. AND4]
          Length = 315

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 160/299 (53%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SI     SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAEKTIGFMRWSKVAFAFSIFMIAASIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ L+S   GD + QNF   +  +VRL+ +  D   +T   +++           
Sbjct: 61  NLENIRAALDSKGFGDATVQNFGSAREVMVRLRPRD-DMSGETLGNQIIGAIKEGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + ++ S I +L+Y+ +RF+W  A GA+  L  DI  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILASLICILLYVSMRFEWRLAAGAVLALAHDIIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   IE +LT VAA+LT++GYS+ND +VV+DR+R+N +         D++D SI +TL
Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEP-SDIMDASITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + + GG++I  FA  +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLFVVIALFMQGGAMIHGFATALLLGITVGTYSSIYVASALALKLGIQKE 297


>gi|330814105|ref|YP_004358344.1| protein-export membrane protein SecD [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487200|gb|AEA81605.1| protein-export membrane protein SecD [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 517

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 193/515 (37%), Positives = 312/515 (60%), Gaps = 9/515 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   V     +  IG+   LPN    +          + R++LGLDL+GGS+L+LE+D +
Sbjct: 5   SRLKVFSIISVIFIGIYFFLPNLSFFNNS----KFFSEKRVNLGLDLQGGSYLLLEIDSN 60

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   LQ  S E+R  L+K  I   +    +N +  +F D + KE +   +      VN
Sbjct: 61  PLIEQRLQTKSLEVRRELRKNNIQYKNFSFSKNSLVFTF-DEKQKETLDKILNER--SVN 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S +    K+  ++      I ++ ++ NI+ +  +A++QS+EI+R RID++G  E  I  
Sbjct: 118 SNIKTGGKEFEII-YENNIIKLIFTKENINLIKKNALDQSIEIVRNRIDELGTKEPNIVT 176

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
            G  RIL++LPG +DPS +++LLG TAK++   V  ++ +          + S  +QY V
Sbjct: 177 RGLDRILVELPGLKDPSAIKKLLGKTAKLTLRFVANSSDENSLGVETLSSKSSG-SQYSV 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           E ++ ISG +L  A   FD   +  VV+   D +G+R+F   +++N+G+ LA+VLD  V+
Sbjct: 236 EKRIIISGENLIDAQPGFDQLNNSSVVNFKLDNIGSRKFALASKENVGRYLAIVLDKDVV 295

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           ++PVI +AI +G  QISGNFT + A  LA +LRAG+LP  LNI+EER+VG DLG +SI K
Sbjct: 296 SSPVIREAIVTGSGQISGNFTTQEANELAILLRAGALPAPLNIIEERSVGPDLGKESIEK 355

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  +++ G +L++++MI  Y  +G+ ++ S+  N++L   +LS+ GATLTLP IAGI+L 
Sbjct: 356 GILSLIIGFLLVMIYMIYNYRIFGVFSNVSLLTNLVLISGVLSIFGATLTLPGIAGIILT 415

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVDSN+L+ ER++EE +K ++   + D  + +  +TI DSN+T LIA  VL++ G G
Sbjct: 416 VGMAVDSNVLIYERVKEELKKEKNYLIAFDTAYKKVLTTILDSNVTTLIAAFVLYYMGSG 475

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
            V+GFAIT+G+ IL + FT   + R ++   I+  
Sbjct: 476 PVKGFAITLGIGILSTFFTTYVLGRLLVAKYIKNN 510



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 87/174 (50%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + +E I KGI+ +II  + ++IY+   ++  F + +  +L+ ++    G  ++FG
Sbjct: 343 SVGPDLGKESIEKGILSLIIGFLLVMIYMIYNYRI-FGVFSNVSLLTNLVLISGVLSIFG 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +K      ++    D +  + L   + +
Sbjct: 402 ATLTLPGIAGIILTVGMAVDSNVLIYERVKEELK---KEKNYLIAFDTAYKKVLTTILDS 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++   I+   +   G   +  FAI +  GI+ +   + ++   +L+  Y    K
Sbjct: 459 NVTTLIAAFVLYYMGSGPVKGFAITLGIGIL-STFFTTYVLGRLLVAKYIKNNK 511


>gi|161504406|ref|YP_001571518.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865753|gb|ABX22376.1| hypothetical protein SARI_02517 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 338

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  FW  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 20  YTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 79

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    ++V         
Sbjct: 80  PAEMDVMREALQKAGFEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQ 139

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++++ I++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 140 NAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIIT 199

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 200 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 258

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 259 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 318

Query: 828 A 828
            
Sbjct: 319 E 319


>gi|68248847|ref|YP_247959.1| preprotein translocase subunit SecF [Haemophilus influenzae
           86-028NP]
 gi|68057046|gb|AAX87299.1| protein-export membrane protein SecF [Haemophilus influenzae
           86-028NP]
 gi|301168891|emb|CBW28485.1| SecYEG protein translocase auxillary subunit [Haemophilus
           influenzae 10810]
 gi|309972616|gb|ADO95817.1| General secretory pathway component SecF [Haemophilus influenzae
           R2846]
          Length = 325

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 92/315 (29%), Positives = 158/315 (50%), Gaps = 5/315 (1%)

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
           +++                +       +FM+ R WG  +S L  + S+  + T G N+G+
Sbjct: 1   MMKLFTKDKDGHFIREINGIKLPFPLTEFMKVRKWGYILSALLMVISLFFIITKGFNWGL 60

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           DF GG+      ++  +L  +RS L    I     Q     ++ ++RL     DS     
Sbjct: 61  DFTGGVVFDTHFSQSANLEQIRSKLHENGIESPVVQTTGSVQDVMIRLPASNNDST---- 116

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E VK  +  +     I++ E VGP +  EL +  +   + +   +LIY+  RF+W   
Sbjct: 117 IGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLG 176

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            G+I +L  D+  TLG F+   IE +LT VAA+L+++GYS+ND +VV+DR+R+N +    
Sbjct: 177 FGSIASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-R 235

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            +   D+ID S+ +TL R++ TS+   + V+ +  +GG  I +F++ +  GI     SSI
Sbjct: 236 RLDTIDIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSI 295

Query: 814 FIAAPILLFIYDWRA 828
           F+A  I   +   R 
Sbjct: 296 FVAIAIAYDVGLRRE 310


>gi|146310539|ref|YP_001175613.1| preprotein translocase subunit SecF [Enterobacter sp. 638]
 gi|145317415|gb|ABP59562.1| protein translocase subunit secF [Enterobacter sp. 638]
          Length = 323

 Score =  222 bits (564), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS    I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVWDFMRWDYWAFGISGFLLIVSIAIIGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P D+  +R  L+     +   QNF   ++ +VR+      + +Q    ++V         
Sbjct: 65  PADMDQMREALQKAGFEEPQLQNFGSSRDIMVRMPPVHDANGSQELGSKVVNVINEATSQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++++ I++L+Y+  RF+W  A G + +L  D+  T
Sbjct: 125 DATVKRIEFVGPSVGADLAQNGAMALLVALISILVYVGFRFEWRLAAGVVISLAHDVVIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 MGVLSLFHIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG ++  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLFLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|84387610|ref|ZP_00990627.1| protein export protein SecF [Vibrio splendidus 12B01]
 gi|84377455|gb|EAP94321.1| protein export protein SecF [Vibrio splendidus 12B01]
          Length = 315

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 163/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        SIL    +I  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAEKMIDFMRWSKVAFLFSILMIGTAIFTLTTKSLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +RS LE+   GD + QNF   +  +VRL+ + G    +T   +++           
Sbjct: 61  NLPDIRSALEAEGFGDATVQNFGSAREVMVRLRPRDG-VAGETLGNQILSAIKDGTGEQV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  IE +LT VAA+LT++GYS+ND +VV+DR+R+N +      +  ++++ SI +TL
Sbjct: 180 VFSLMQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-EVLNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFAQGGAMIHGFATALLLGITVGTYSSIYVASALAMKLGITRE 297


>gi|163784763|ref|ZP_02179564.1| protein-export membrane protein [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879967|gb|EDP73670.1| protein-export membrane protein [Hydrogenivirga sp. 128-5-R1-1]
          Length = 303

 Score =  222 bits (564), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 150/302 (49%), Gaps = 2/302 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               +     I F++ + +G   S    + S+ L+F  G N G+DF GG  + V     +
Sbjct: 1   MRNFLSTPPNIDFLKIKKFGYITSGTLVLISLILIFIKGFNLGLDFTGGTSIQVKFEEKI 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++  +R     +   D+  Q    E      ++       +     ++ K          
Sbjct: 61  NVGNIRKATSYVGFKDVQIQEVGKEGKEY-EIRIPIKYGSSTVIYKKVKKALDEFFKGKY 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I+  E +G  +  EL +  I  ++   IA+L+Y+  RF+  FA+ A+  L  D   TLG
Sbjct: 120 KIRRVEYIGSVVGEELRKASIYSIVAVMIAILLYVGYRFEPVFAIAAVIPLFHDAILTLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L G E NL+ +AA+LT++GYS+ND ++++DR+R+N+K+     +   L+++SINE L
Sbjct: 180 MFSLTGYELNLSVIAAILTVLGYSLNDTIIIFDRIRENIKIRGKK-NLLQLVNQSINENL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ TS     SVL + ++GG  +  F+  +  GI+    SSI++A  +++ I  +  K
Sbjct: 239 ARTIITSGTTLFSVLALYLFGGESLKGFSFALLVGIIFGTYSSIYVAGALVVDIEKYIYK 298

Query: 830 NA 831
             
Sbjct: 299 KK 300


>gi|332977808|gb|EGK14565.1| preprotein translocase D and F [Desmospora sp. 8437]
          Length = 302

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 147/300 (49%), Gaps = 6/300 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               + F+  R W    S +  I  I  L   GLN G+DF  G ++ +  N+P DL   +
Sbjct: 1   MNFKLDFVGRRRWFFIFSGVVLILGILSLLFQGLNLGVDFVSGTRVDIKINKPYDLEEAK 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +LE L               +L+    Q  D     ++ E                N +
Sbjct: 61  GHLEKLGYKSPDASKAGENYEWLIFRTNQVLDHNDIGKIREE----FQASYGNQVDVNEQ 116

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V P + REL +  I+ ++I+ + +++Y+ +RF++  A+ A+  L+ D+    G F++F 
Sbjct: 117 KVDPIVGRELAKNAIISLLIAFLGIVLYVTLRFEYRMAVPAVLALLHDVLVVTGAFSIFQ 176

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSV 773
            E  L  +AA+LT++G+S+ND +V++DR+R+NM L        F   ++ SI +TL RS+
Sbjct: 177 WEVGLVYIAAILTIVGFSINDTIVIFDRIRENMDLEKPKTWEDFGKTVNASIQQTLVRSI 236

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            TS+    + L + V GG  I  F++ +  G++    SSIFIA+ I +       + A++
Sbjct: 237 NTSLTVVFAALSLFVLGGESIRYFSLALLIGLIFGTYSSIFIASQIWVGWKWRSMEKAKL 296


>gi|220935233|ref|YP_002514132.1| preprotein translocase subunit SecF [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996543|gb|ACL73145.1| preprotein translocase subunit SecF [Thioalkalivibrio sp. HL-EbGR7]
          Length = 313

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 104/296 (35%), Positives = 168/296 (56%), Gaps = 2/296 (0%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L      I FM  R   + +S L  I SI L+ T GLN+GIDF GG  + V    PV+L
Sbjct: 1   MLNFANANINFMGQRRLWLAVSALLIIGSIVLIATRGLNFGIDFTGGTVIEVGYPEPVEL 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             VR  L++   G    Q F   ++ L+RL  + G++ A     E+++           +
Sbjct: 61  EQVREQLDAGGYGRAIVQYFGTSQDVLIRLAPREGENTADLS-NEVLRLLRAGADNGVDM 119

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  E VGP++  EL  +G + ++ +   +LIY+ +RF+W F++GA+  L  D+  TLG F
Sbjct: 120 RRVEFVGPQVGEELREQGGLAMLYALFGILIYVALRFEWRFSVGAVLALAHDVIITLGIF 179

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           AL   EF+L+ +AAVL +IGYS+ND +VVYDR+R+N +      +   +++K++N+TL R
Sbjct: 180 ALLQKEFDLSVLAAVLAVIGYSLNDTIVVYDRIRENFRKLRK-ENAEQVMNKAVNQTLSR 238

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++ T +   + +L +   GG+VI  FA+ +  G++V   SSI+IAA + L +   R
Sbjct: 239 TIMTGVTTLLVLLALFFLGGAVINGFALALIIGVLVGTYSSIYIAAALALVMGVDR 294


>gi|254512459|ref|ZP_05124526.1| protein-export membrane protein SecF [Rhodobacteraceae bacterium
           KLH11]
 gi|221536170|gb|EEE39158.1| protein-export membrane protein SecF [Rhodobacteraceae bacterium
           KLH11]
          Length = 322

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 175/305 (57%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P   +  F       +GIS L  + +       GLN+GIDF+GG  +   + + 
Sbjct: 1   MRLKLVPQNTSFDFFSRWKIWLGISGLMMVIAFTSFLLQGLNFGIDFRGGTTIRTQSAQE 60

Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +D+   R  +  L++GD            + E   ++R+Q Q G        +  V++ +
Sbjct: 61  IDVGAYRDAIAPLELGDVTITEIFDPTFGEDENVAMIRIQAQDGAEAVAATTVTAVEEAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
           T   P     + E VGPK+S ELI+  ++ V ++  A+L+YIW+RF+W FALGA+  L+ 
Sbjct: 121 TAAAPDIQFVSVESVGPKVSGELIQTAVIAVALAIGAVLVYIWLRFEWQFALGAVAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y      +++++
Sbjct: 181 DVILTIGIFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKK-DLKEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINETL R+V TS+   ++++ + V GG VI  F   M +G++V   SS+F+A+ ILL+
Sbjct: 240 ISINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVIVGTYSSVFVASTILLW 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|269103292|ref|ZP_06155989.1| protein-export membrane protein SecD [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163190|gb|EEZ41686.1| protein-export membrane protein SecD [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 571

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 155/523 (29%), Positives = 284/523 (54%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     N + LGLDLRGG H ++EVD D  +   L    D  R+ L++  I
Sbjct: 58  NLAPATPKWLEDIGANPMKLGLDLRGGVHFLMEVDMDAAMEKLLGQQEDTFRTELREAKI 117

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++ + ++ + +   D+   E   + +          L+ D       +     ++  
Sbjct: 118 RYRAIDKTKDSVVVRLRDAEQVEQAKNALEK--------LHPDMVFVENDSKGRYLLTAT 169

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A++Q++ I+R R++++G++E  +QR G++RI+++LPG QD +R +++L
Sbjct: 170 FTEARLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQGANRIVVELPGVQDTARAKEIL 229

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V  +             G       D    +++ +V +SG H+    ++ 
Sbjct: 230 GATATLEFREVDSSADLGAAAAGRVPAGSEVKFTRDERPVVLKKRVILSGSHITD-ASSS 288

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    +R+N+GK +A V                       +
Sbjct: 289 ADEYGRPQVNISLDGEGGSKMTAFSRNNVGKLMATVFTEYKDSGKRSPDGKVVLEKHEEV 348

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q       +I+G  T   A  L+ +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 349 INQATIQTALGRNFRITGIDTQAEAHNLSLLLRAGALIAPISIVEERTIGPSMGQQNIDM 408

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V +++F +V Y  +GL+A+ ++ +N++L + ++S++  AT+TLP IAGIVL
Sbjct: 409 GVQACIWGMVAVMIFTLVYYKAFGLIANLALAMNLVLIIGIMSMIPGATMTLPGIAGIVL 468

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ +S   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 469 TVGMAVDANVLIFERIREELREGRSPQQAIQQGYANAFSTIADANITTLITAIILFAVGT 528

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   RA++ ++   K++  + I
Sbjct: 529 GAIKGFAVTLSIGILTSMFTAIVCTRAVVNWLYGGKRIDKLSI 571



 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 97/245 (39%), Gaps = 5/245 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D      + + +        N    +  L R     G           +  +   
Sbjct: 325 FTEYKDSGKRSPDGKVVLEKHEEVINQATIQTALGRNFRITGIDTQAEAHNLSLLLRAGA 384

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  G+   I   +A++I+  + +K  F L A   L +++
Sbjct: 385 LIAPISIVEERTIGPSMGQQNIDMGVQACIWGMVAVMIFTLVYYK-AFGLIANLALAMNL 443

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      S +  I +
Sbjct: 444 VLIIGIMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQ 500

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     ++ ++
Sbjct: 501 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVCTRAVVNWL 560

Query: 824 YDWRA 828
           Y  + 
Sbjct: 561 YGGKR 565


>gi|88812651|ref|ZP_01127898.1| SecF protein [Nitrococcus mobilis Nb-231]
 gi|88790067|gb|EAR21187.1| SecF protein [Nitrococcus mobilis Nb-231]
          Length = 309

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 159/298 (53%), Gaps = 5/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I F+  R +   +S +  + ++  L   GLN G+DF GG  + V   +P +
Sbjct: 1   MDLFKRQTHINFIGMRRYATILSAILILIALVSLAVRGLNLGLDFTGGTIVEVTYPKPAE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L      D   Q+F   ++ L+R+  +   S      +             + 
Sbjct: 61  LQDVRAALAVAGYPDAVVQHFGSARDVLIRMPSRQTSSAQLGDQIITAL----SGSGEAR 116

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +   E VGP++  +LI KG + ++ + + +LIY+  RF++ FA+ ++  LI D+  T+GF
Sbjct: 117 LSRVEFVGPQVGEQLIEKGGLAMLYTLVGVLIYVAFRFEYRFAVSSVAALIHDVIITIGF 176

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+LF IEF+LT +AAVL +IGYS+ND +VV+DR+R+N        S  ++ ++SIN+TL 
Sbjct: 177 FSLFQIEFDLTVLAAVLAVIGYSLNDTIVVFDRIRENFVRMRKG-SPIEIANQSINQTLS 235

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS    I V  + + GG +I  FA+ +  GIV    SS++IA+   L +   + 
Sbjct: 236 RTLVTSGTTLIVVFTLYLIGGELIAGFALALLVGIVTGTYSSVYIASTTALALGVSKQ 293


>gi|317052522|ref|YP_004113638.1| protein-export membrane protein SecF [Desulfurispirillum indicum
           S5]
 gi|316947606|gb|ADU67082.1| protein-export membrane protein SecF [Desulfurispirillum indicum
           S5]
          Length = 314

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 97/294 (32%), Positives = 168/294 (57%), Gaps = 3/294 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FMR R + V +S +    ++  + T GLN+GIDF GG  + +   +P  +  +R
Sbjct: 4   RFYYIPFMRLRTYAVAVSAILVAIALISMGTRGLNFGIDFTGGALVQLEFQQPPVIEEIR 63

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT-EIVPLSTIQNT 654
           S+L ++ +GD + Q+F  ++  LVR      +S A   ++ ++++ ++ +      +   
Sbjct: 64  SHLSAVGLGDSTIQHFGSDREILVRAPIISDESAAAMELISLIRETLSAQYGDQMDVLRI 123

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E VGP++  EL  +G   ++ + +A++ YIW R++  F + A+  L+ D+  TLG F+L 
Sbjct: 124 ETVGPRVGGELREQGTYAILYALLAIVAYIWWRYELNFGVAAVIALVHDVVITLGIFSLA 183

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRS 772
           G+ F+L  +AA+LT+IGYS+ND +VV+DR+R+N+         S   +I+ SI ETL R+
Sbjct: 184 GVTFSLPVLAAILTVIGYSLNDTIVVFDRIRENLYIPEGKEKPSIISIINTSITETLSRT 243

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           + TS    I V  +  +GG VI  FA  +  GI+V   SSIF+A+ +L++    
Sbjct: 244 ILTSGTTLIVVAVLYFFGGEVINGFAFTLLVGIIVGTYSSIFVASLLLVYWRPR 297


>gi|293611110|ref|ZP_06693409.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826762|gb|EFF85128.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 633

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 158/535 (29%), Positives = 272/535 (50%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  V   ++  + +LR   ++  I
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAVAQRMETSATDLRRQFRENKI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+    N IT+ FAD+  ++   D +                +  L ++T   + + 
Sbjct: 163 KFNSLALTNNVITVQFADNADRDVAMDFLRRNGNEY--------TQQALASSTGSTLKLT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ S+A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDVRRQEIQSYAVNQNLTTLRNRINELGVAEALVQSQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V                            +     G Q L++    ++G 
Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKYNGQPLPPGTEVFAYESLDSGRQLLLQRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   +    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQKINYVTDPK 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QA+     +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I KG  +   G +L+ ++M+V +  +GL+A+F++  N+ + L ++S 
Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRVFGLIANFALVFNLAMILTVMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE     S   ++  G+ RAY+TIFDSN
Sbjct: 515 IGASLTLPGIAGIVITIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   ++   
Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQIIYGKRRNLK 629



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             N   D              +    N    +  L       G S  Q      +  +  
Sbjct: 386 KINYVTDPKTGAQTEVRTPYTESVVINAATVQAVLGSTFRITGLSSPQEASELALMLRAG 445

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +          +VGP + +E I KG++   I  + + I++ + F+  F L A   L+ +
Sbjct: 446 ALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRV-FGLIANFALVFN 504

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L   +  G    L  +A ++  IG +V+  V++ +R+R+ M       S +  I  
Sbjct: 505 LAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREEMLW---GASPKQAIVA 561

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +        +++  F+    +   G   I  FA+ +  GI+ +  ++I +   I+  I
Sbjct: 562 GYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIICSMFTAITVTRAIVQII 621

Query: 824 YDWRAKNARI 833
           Y  R    ++
Sbjct: 622 YGKRRNLKKL 631



 Score = 42.4 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 1  MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44
          MR   W  +L  ++  I  L ALP+  P     +   A    +I
Sbjct: 1  MRYPAWKYLLILVVLVISTLYALPSLYPDEPAVQISGAKAGTQI 44


>gi|90416762|ref|ZP_01224692.1| protein-export membrane protein SecF [marine gamma proteobacterium
           HTCC2207]
 gi|90331515|gb|EAS46751.1| protein-export membrane protein SecF [marine gamma proteobacterium
           HTCC2207]
          Length = 304

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 162/289 (56%), Gaps = 6/289 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM  R      S +  I S+  L T GL  G+DF GG Q+ V   +P D++ +R  LE
Sbjct: 7   YNFMGLRKIAAICSAVLLIASVASLSTKGLVLGLDFSGGTQIEVGYEQPADVTAIREQLE 66

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +          +  E + L+RLQ +P     +  + E V   +        ++  + VGP
Sbjct: 67  AAGFEGPVVIQYGSETDVLIRLQGKP-----EQGLSEKVYAVLEGGSEAVELRRVDFVGP 121

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           +I  EL   G +G++ +   +++Y+ IRF+  F++GA+  L  D+  TLGFF++  +EF+
Sbjct: 122 QIGEELREDGGLGMLTALAVVMLYVAIRFQLKFSIGAVLALAHDVIITLGFFSITALEFD 181

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AA+L ++GYS+ND +VV DR+R+N +      +  ++I++S+++TL R++ TS+  
Sbjct: 182 LTVLAAILAVVGYSLNDTIVVSDRIRENFRKIRK-ATPVEVINESLSQTLWRTINTSVTT 240

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +L +   GG +I +FA+ +  G+ +   SSI++AA ++L +   R 
Sbjct: 241 MLVLLALFFIGGELIHNFAVALMVGVGIGTYSSIYVAATVMLALKVDRE 289


>gi|78043746|ref|YP_360343.1| preprotein translocase subunit SecF [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995861|gb|ABB14760.1| protein-export membrane protein SecF [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 287

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 92/292 (31%), Positives = 156/292 (53%), Gaps = 7/292 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
              ++ R +   IS+L  +  I  LF  GLN+GIDF GG  L V  ++ V    +R+ + 
Sbjct: 2   FHIIKNRKYWYIISLLIIVPGIISLFIQGLNWGIDFTGGTILEVKFSKNVVSQDIRNVIT 61

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +     S Q             Y        T   + V K + + +    +   + +G 
Sbjct: 62  QMGFKVSSIQLTGEGN-------YLIRTEELDTVKRDAVIKALEDKLGKVEVLREDRIGS 114

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            +SREL++K  + ++I+++ ML+YI  RF++YF + AI  L+ D+  T+G F++F  E +
Sbjct: 115 VVSRELLQKAFLALLIASVLMLLYITFRFEFYFGVAAIIALLHDVFVTIGLFSIFQWEVD 174

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + VAA+LT+IGYS+ND +V++DR+R+N+K      +  DLI+KS+ +T+ RS+ T +  
Sbjct: 175 SSFVAAILTIIGYSINDTIVIFDRIRENLKKREKGEALDDLINKSLWQTMARSINTVLTV 234

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              ++ + ++GGS I  F   M  G+   A SSIF A+PI   +    +K  
Sbjct: 235 IFVLVSLLLFGGSSIKVFVTAMLIGVTSGAYSSIFNASPIWFDLKRLSSKRK 286


>gi|153875720|ref|ZP_02003395.1| Protein-export membrane protein [Beggiatoa sp. PS]
 gi|152067816|gb|EDN66605.1| Protein-export membrane protein [Beggiatoa sp. PS]
          Length = 318

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 97/297 (32%), Positives = 158/297 (53%), Gaps = 4/297 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM  R   + IS +    SI  L T GL +G+DF GG  + V   +PV+
Sbjct: 1   MLLTRFDYKIDFMGKRHIAMWISAILMTVSIASLATQGLVFGLDFTGGTLVEVRYKQPVE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI---TEIVP 647
           L  +R  L      +   Q F    +  +RL+    +   +   +     ++        
Sbjct: 61  LEPIRKTLRENGFPEAVIQYFGTSHDVSIRLKAHEENEENKEEPISTKILRLLQQQSGGQ 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              ++  E VGP+I  EL+ KG + V+ +   +LIY+W RF++ FALGAI  L+ D    
Sbjct: 121 EVEMRRVEYVGPQIGSELVEKGGLAVLWTLFGILIYVWFRFEYRFALGAIAALVHDTLIV 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G F++F +EF+LT +AAVL +IGYS+ND +VV+DR+R+N        S  ++++KSIN+
Sbjct: 181 VGIFSIFRLEFDLTVLAAVLAVIGYSLNDTIVVFDRIRENFVKLRK-QSAIEVMNKSINQ 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            LGR+V TS+   + ++ +   GG +I  F+  +  G+++   SSI+IA+   L + 
Sbjct: 240 MLGRTVMTSVTTALVLIVLFTIGGELIHGFSTALLIGVIIGTYSSIYIASASALVLG 296


>gi|91763287|ref|ZP_01265251.1| protein-export membrane protein SECD [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91717700|gb|EAS84351.1| protein-export membrane protein SECD [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 517

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 185/519 (35%), Positives = 309/519 (59%), Gaps = 9/519 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   + L S++    + IA  NF           +    +I+LGLDL+GGS+L+LE+D +
Sbjct: 5   SKLRITLVSLVSIFFIFIAASNFQNPE------DSFISKKINLGLDLQGGSYLLLEIDNE 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 LQ  +  +R+FLK + I    +R    KI  S  +    E +          +N
Sbjct: 59  PVEIQKLQNTTTVIRNFLKDKKITFNDLRIEDKKIIFSIPND-NIELVQSFFLDKESDIN 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                       V   + E ++ LS+  + ++ + + +Q++EI+R+R+D++G +E  I +
Sbjct: 118 PYYFQYKSHQFDVNIQDNEFTLTLSKYGLIEIKTSSQDQAIEIVRRRVDEVGTNEPNILK 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
            G++RIL++LPG  DP R++ LLG TA ++F  V  NN+       ++F   +  ++ +V
Sbjct: 178 RGNNRILVELPGLDDPMRIKSLLGKTANLTFRFVTQNNNDTFGTEMLQFEDGT--SEAMV 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             ++ ++G +L  A    + +T++ VV  + D +GA+RF + T   IGK LA+VLDG+++
Sbjct: 236 SKRIILNGENLLDAQPQMNNQTNETVVSFTLDRVGAKRFGKATSTGIGKQLAIVLDGKIV 295

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           +APVI   I SG  QISGNFT ++A  LA +LR+G+LP  LNI+EER VG DLG DSI  
Sbjct: 296 SAPVIRDTIASGNGQISGNFTFQSATDLALLLRSGALPAPLNIIEERTVGPDLGQDSINA 355

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  A++ G +L+++FM + Y  +GL+A+ ++ +N+   + +L+L  ATLTLP IAGI+L 
Sbjct: 356 GVIALMIGFLLVIIFMFIKYRIFGLIANITLLINLFFLVGILTLFEATLTLPGIAGIILT 415

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+ ERI+EE +K ++   + D G+ ++ + I D+NIT LIA V+LFF G G
Sbjct: 416 VGMAVDANVLIFERIKEECKKEKNNIIAFDTGYVKSKTAIIDANITTLIAAVILFFMGSG 475

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            V+GF++T+ + I  ++F+   I R +    +   K K+
Sbjct: 476 PVKGFSVTLAVGIFTTLFSVYFIARMLTGLYVVRNKEKT 514



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/178 (19%), Positives = 85/178 (47%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++ I  G++ ++I  + ++I+++I+++  F L A  TL++++   +G   LF 
Sbjct: 343 TVGPDLGQDSINAGVIALMIGFLLVIIFMFIKYRI-FGLIANITLLINLFFLVGILTLFE 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+++  K      +     D    ++    +  
Sbjct: 402 ATLTLPGIAGIILTVGMAVDANVLIFERIKEECK---KEKNNIIAFDTGYVKSKTAIIDA 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I+ + +   G   +  F++ +A GI     S  FIA  +         +  ++
Sbjct: 459 NITTLIAAVILFFMGSGPVKGFSVTLAVGIFTTLFSVYFIARMLTGLYVVRNKEKTKL 516


>gi|145628557|ref|ZP_01784357.1| preprotein translocase subunit SecF [Haemophilus influenzae
           22.1-21]
 gi|145639849|ref|ZP_01795450.1| protein export protein SecF [Haemophilus influenzae PittII]
 gi|148825478|ref|YP_001290231.1| preprotein translocase subunit SecF [Haemophilus influenzae PittEE]
 gi|144979027|gb|EDJ88713.1| preprotein translocase subunit SecF [Haemophilus influenzae
           22.1-21]
 gi|145271067|gb|EDK10983.1| protein export protein SecF [Haemophilus influenzae PittII]
 gi|148715638|gb|ABQ97848.1| protein export protein SecF [Haemophilus influenzae PittEE]
          Length = 324

 Score =  221 bits (563), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 154/309 (49%), Gaps = 5/309 (1%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                        +       +FM+ R  G  +S L  + S+  + T G N+G+DF GG+
Sbjct: 6   KDKGGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGLDFTGGV 65

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                 ++  +L  +R+ L    I     Q     ++ ++RL     DS     + E VK
Sbjct: 66  VFDTHFSQSANLEQIRNKLHENGIESPVVQTTGSVQDVMIRLPASNNDST----IGEHVK 121

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +     I++ E VGP +  EL +  +   + +   +LIY+  RF+W    G+I +
Sbjct: 122 SMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSIAS 181

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  D+  TLG F+   IE +LT VAA+L+++GYS+ND +VV+DR+R+N +     +   D
Sbjct: 182 LAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-RRLDTID 240

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +ID S+ +TL R++ TS+   + V+ +  +GG  I +F++ +  GI     SSIF+A  I
Sbjct: 241 IIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIAI 300

Query: 820 LLFIYDWRA 828
              +   R 
Sbjct: 301 AYDVGLRRE 309


>gi|94498647|ref|ZP_01305199.1| protein-export membrane protein SecD [Sphingomonas sp. SKA58]
 gi|94421877|gb|EAT06926.1| protein-export membrane protein SecD [Sphingomonas sp. SKA58]
          Length = 532

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 187/532 (35%), Positives = 295/532 (55%), Gaps = 14/532 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W +    +   IG+L A+P+FLP + + + P  M + R++LGLDL GGSHL+LE    
Sbjct: 5   SRWAIAAILLPLLIGVLCAVPSFLPDAAVAKLPGFM-QTRVNLGLDLAGGSHLLLEASTQ 63

Query: 64  DFVNGFLQMYSDELRSFLK--KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           D     L    +++R+ L+     I +  +     K++    D    +   +++      
Sbjct: 64  DVARQRLVNMEEQVRTELRRGDPRIAIGDISSRDGKLSFMVRDPAQVDAAVERIR---PL 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                    +   +       I I  +   ID  I  A+E + E+IR+RID++G  E TI
Sbjct: 121 TQGAGLTGQRDFNVEVVNSSTIVITPTDAGIDNAIKSAMEVATEVIRKRIDEMGTREPTI 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-------- 233
           Q+ G +RI++Q+PG Q+P  L+ LLG TAK+ F  V    +      G   +        
Sbjct: 181 QQQGDNRIVVQVPGLQNPKALKDLLGQTAKLEFKLVDTAANPAEVAQGRAPVGSEVLPYP 240

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            +  G   +   +  +              + ++ +V+I F+  G R+F +VT  N+ +P
Sbjct: 241 DNPSGVPVIAVKRQVMVSGEDLTDATQGYDQNNQAIVNIRFNGSGGRKFGQVTSQNVNRP 300

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A++LDGRVL+AP IN+ I  G AQISGNFT+E+A  LA  LR+G LP+ L +VEER VG
Sbjct: 301 FAIILDGRVLSAPNINEPILGGSAQISGNFTVESANQLAIALRSGKLPVALTVVEERTVG 360

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG+DSI  G  A +  +V +  FM V YG++G+ A+ ++ +NV++ L ++ +LGATLT
Sbjct: 361 PGLGADSIRAGLIASIIAVVAVAAFMFVSYGRFGVYANIAVAINVLVILGVMGILGATLT 420

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAG VL IG AVD+N+L+ ERIREE R+ ++V  +++ G+  A  TIF++N+T  IA
Sbjct: 421 LPGIAGFVLTIGTAVDANVLIYERIREERRRGRNVVQAIEHGYKEASRTIFEANVTHAIA 480

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             ++   G G V+GFAI + + I  S+FTA++  R +    +R K+   I I
Sbjct: 481 GGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTRLLASRWVRAKRPTEITI 532



 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 71/174 (40%), Gaps = 4/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + IR G++  II+ +A+  ++++ +   F + A   + +++   LG   + G
Sbjct: 358 TVGPGLGADSIRAGLIASIIAVVAVAAFMFVSYG-RFGVYANIAVAINVLVILGVMGILG 416

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A  +  IG +V+  V++Y+   +  +      +    I+    E        
Sbjct: 417 ATLTLPGIAGFVLTIGTAVDANVLIYE---RIREERRRGRNVVQAIEHGYKEASRTIFEA 473

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++   I+   M   G   +  FAI +  GI  +  +++     +       +  
Sbjct: 474 NVTHAIAGGIMLALGSGPVKGFAIVLLIGIATSVFTAVTFTRLLASRWVRAKRP 527


>gi|71083672|ref|YP_266392.1| protein-export membrane protein SECD [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|71062785|gb|AAZ21788.1| protein-export membrane protein SECD [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 517

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 186/519 (35%), Positives = 309/519 (59%), Gaps = 9/519 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   + L S++    + IA  NF           +    +I+LGLDL+GGS+L+LE+D +
Sbjct: 5   SKLRITLVSLVSIFFIFIAASNFQNPE------DSFISKKINLGLDLQGGSYLLLEIDNE 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 LQ  +  +R+FLK + I    +R    KI  S  +    E +          +N
Sbjct: 59  PVEIQKLQNTTTVIRNFLKDKKITFNDLRIEDKKIIFSIPND-NIELVQSFFLDKESDIN 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                       V   + E ++ LS+  + ++ + + +Q++EI+R+R+D++G +E  I +
Sbjct: 118 PYYFQYKSHQFDVNIQDNEFTLTLSKYGLIEIKTSSQDQAIEIVRRRVDEVGTNEPNILK 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
            G++RIL++LPG  DP R++ LLG TA ++F  V  NN+       ++F   +  ++ +V
Sbjct: 178 RGNNRILVELPGLDDPMRIKSLLGKTANLTFRFVTQNNNDTFGTEMLQFEDGT--SEAMV 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             ++ ++G +L  A    + +T++ VV  + D +GA+RF + T   IGK LA+VLDG+++
Sbjct: 236 SKRIILNGENLLDAQPQMNNQTNETVVSFTLDRVGAKRFGKATSTGIGKQLAIVLDGKIV 295

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           +APVI   I SG  QISGNFT ++A  LA +LR+G+LP  LNI+EER VG DLG DSI  
Sbjct: 296 SAPVIRDTIASGNGQISGNFTFQSATDLALLLRSGALPAPLNIIEERTVGPDLGQDSINA 355

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  A++ G +L+++FM V Y  +GL+A+ ++ +N+   + +L+L  ATLTLP IAGI+L 
Sbjct: 356 GVIALMIGFLLVIIFMFVKYRIFGLIANITLLINLFFLVGILTLFEATLTLPGIAGIILT 415

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+ ERI+EE +K ++   + D G+ ++ + I D+NIT LIA V+LFF G G
Sbjct: 416 VGMAVDANVLIFERIKEECKKEKNNIIAFDTGYVKSKTAIIDANITTLIAAVILFFMGSG 475

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            V+GF++T+ + I  ++F+   I R +    +   K K+
Sbjct: 476 PVKGFSVTLAIGIFTTLFSVYFIARMLTGLYVVRNKEKT 514



 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++ I  G++ ++I  + ++I+++++++  F L A  TL++++   +G   LF 
Sbjct: 343 TVGPDLGQDSINAGVIALMIGFLLVIIFMFVKYRI-FGLIANITLLINLFFLVGILTLFE 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+++  K      +     D    ++    +  
Sbjct: 402 ATLTLPGIAGIILTVGMAVDANVLIFERIKEECK---KEKNNIIAFDTGYVKSKTAIIDA 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I+ + +   G   +  F++ +A GI     S  FIA  +         +   +
Sbjct: 459 NITTLIAAVILFFMGSGPVKGFSVTLAIGIFTTLFSVYFIARMLTGLYVVRNKEKTEL 516


>gi|323137256|ref|ZP_08072335.1| protein-export membrane protein SecF [Methylocystis sp. ATCC 49242]
 gi|322397614|gb|EFY00137.1| protein-export membrane protein SecF [Methylocystis sp. ATCC 49242]
          Length = 370

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 182/302 (60%), Gaps = 4/302 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L P+     FMR R      S + S+ ++ L    G+N+GIDF GG  + + A  
Sbjct: 1   MKLLRLAPENTKFPFMRFRRVSYPFSAVLSLIAVALFVFKGMNFGIDFAGGTVIELRAKS 60

Query: 588 PV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              ++  +R+  ESL++GDI  Q F    +  +R   Q     A+ +  E V++    + 
Sbjct: 61  GAAEVGTLRTLGESLKLGDIEVQAFGNPADATLRFGLQGQGEPAKQQ--EAVERVRAAVG 118

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               ++  E+VGP++S EL++ G +GV++S IA+L Y+W RF+W FA+GA+   + D+  
Sbjct: 119 ADYDLRRVEVVGPRVSNELVQSGTLGVVLSIIAVLTYLWFRFEWQFAIGAVIATMHDLLL 178

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+GFF++  +EFN T++AA+LT++GYS+N+ VVV DR+R+NM+ Y   ++   +ID SIN
Sbjct: 179 TVGFFSITQLEFNTTSIAAILTIVGYSLNETVVVLDRIRENMRKY-KKMATAQMIDMSIN 237

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             L R++ T+    +++L + ++GG VI SF++ M +GI VA  SSIFI +P+L+++   
Sbjct: 238 AVLPRTIMTATTVMLALLSLVIFGGQVIRSFSLAMIWGIFVATYSSIFICSPMLIYLGLR 297

Query: 827 RA 828
             
Sbjct: 298 NE 299


>gi|332288532|ref|YP_004419384.1| preprotein translocase subunit SecF [Gallibacterium anatis UMN179]
 gi|330431428|gb|AEC16487.1| preprotein translocase subunit SecF [Gallibacterium anatis UMN179]
          Length = 324

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 103/309 (33%), Positives = 168/309 (54%), Gaps = 4/309 (1%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           MK+ D    +   +      I FMR R  G  +SI+    S+  + T G N+G+DF GG 
Sbjct: 1   MKNTDNQTETVNDIKLPYKLIHFMRYRMVGYALSIIVVAISLFFIITKGFNWGLDFTGGT 60

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    ++P DL  +RS L    + +   Q   G ++ +VR+     D    T +  ++ 
Sbjct: 61  VIDTSFSQPADLPKIRSILAQNGLDNAVVQASGGVRDVMVRVPASVNDPNIGTHIKTILS 120

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             I       +I++ E VGP +  EL    I   +I+   +L+Y+ +RF+W  ALGAI +
Sbjct: 121 DNI---DKDVSIRSIEFVGPNVGEELTTSAIYATLITLAMLLLYVGLRFEWRLALGAILS 177

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  D+  TLGFFA+  +E +LT VAA+L++IGYS+ND +VV+DR+R+N +      S  +
Sbjct: 178 LAHDVIVTLGFFAMLQVEIDLTFVAAILSVIGYSLNDSIVVFDRVRENFRKI-RRASTVE 236

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +I+ S+++TL R++ TS+   I V+ + ++GG  I SF++ +  GI     SSI+IA  +
Sbjct: 237 IINISLSQTLSRTLMTSITTLIVVIALLLFGGPTIHSFSLALLIGIGFGTYSSIYIAIAL 296

Query: 820 LLFIYDWRA 828
            L     R 
Sbjct: 297 ALNFGLKRE 305


>gi|299531885|ref|ZP_07045285.1| preprotein translocase subunit SecD [Comamonas testosteroni S44]
 gi|298720060|gb|EFI61017.1| preprotein translocase subunit SecD [Comamonas testosteroni S44]
          Length = 632

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 169/529 (31%), Positives = 275/529 (51%), Gaps = 22/529 (4%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++ R P  +       + LGLDLRGG H +L+VD    +    + Y+ +LRS ++ + I
Sbjct: 109 NLVSRSPDWLTAIGAKPMYLGLDLRGGVHFMLQVDMAAALTKKAESYAGDLRSSMRDKNI 168

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +  N +T+   D        + +             D         T  ++   
Sbjct: 169 RHGGVSRDGNNVTIRVRDEATLTAARNLIADQF--------PDLAATSTPDGTGFKLVAS 220

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    + +V   A++Q++  +  RI+++G++E  IQ+ G  RI++QLPG QD ++ + +L
Sbjct: 221 IKPEALRKVQEQALKQNIVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDIL 280

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGIHLNGATA 259
           G TA +    V  +   +    G   +        D +G   +V+ +V ++G +L  A  
Sbjct: 281 GRTATLEVRMVDESAEARAAEMGSGPVPFGSEKYLDRNGQGIIVQKQVTLTGENLTDAQP 340

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSG 315
            FD +T +P V+++ D  GAR F +VTR+N+GK +         G V+TAPVI   I  G
Sbjct: 341 GFDSQTQEPTVNLTLDAKGARIFKDVTRENVGKRMAIILFEKGKGEVVTAPVIRGEIGGG 400

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           + QISG  T   A   + +LRAGSL   + I+EE  +G  LG+D+I +G  ++V G+V +
Sbjct: 401 RVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNIDRGIHSVVWGMVAV 460

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
             FM V Y  +G+++  S+ +NV+L LA+LS+L ATLTLP IA + L +G+A+DSN+L+N
Sbjct: 461 AAFMCVYYMLFGVISTISLGINVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERIREE R   S   ++  G+  A+ TI DSN+T LI  + L  FG G VRGFA+   + 
Sbjct: 521 ERIREELRAGASPQAAIHAGYEHAWHTILDSNVTTLIVGLALLAFGSGVVRGFAVVHCIG 580

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           IL SMF+A+   R ++      +K                   ++    
Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGGRKKLKSLAIGQVWKPEGEGHRSVAGRG 629



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 86/212 (40%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I +GI  V+   +A+ 
Sbjct: 402 VQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNIDRGIHSVVWGMVAVA 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + +   F + +  +L +++   L   ++      L  +AA+   +G +++  V++ 
Sbjct: 462 AFMCVYY-MLFGVISTISLGINVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      S +  I           + +++   I  L +  +G  V+  FA+  
Sbjct: 521 ERIREELRA---GASPQAAIHAGYEHAWHTILDSNVTTLIVGLALLAFGSGVVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++F +  ++   Y  R K   +
Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGGRKKLKSL 609



 Score = 46.2 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 30/118 (25%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   +G+L  LPNF  ++                           ++V 
Sbjct: 3   RYPVWKYAIIVIALLVGVLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         ++ S L    +   SM      +   F     +    D +   L
Sbjct: 38  SAKSTVKVDNAVLQKVESALSAASVKATSMSLEGTSVRARFDTPDEQLKAKDVIQKAL 95


>gi|309750344|gb|ADO80328.1| General secretory pathway component SecF [Haemophilus influenzae
           R2866]
          Length = 325

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/315 (28%), Positives = 157/315 (49%), Gaps = 5/315 (1%)

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
           +++                +       +FM+ R  G  +S L  + S+  + T G N+G+
Sbjct: 1   MMKLFTKDKGGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGL 60

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           DF GG+      ++  +L  +R+ L    I     Q     ++ ++RL     DS     
Sbjct: 61  DFTGGVVFDTHFSQSANLEQIRNKLHENGIESPVVQTTGSVQDVMIRLPASNNDST---- 116

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E VK  +  +     I++ E VGP +  EL +  +   + +   +LIY+  RF+W   
Sbjct: 117 IGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLG 176

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            G+I +L  D+  TLG F+   IE +LT VAA+L+++GYS+ND +VV+DR+R+N +    
Sbjct: 177 FGSIASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-R 235

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            +   D+ID S+ +TL R++ TS+   + V+ +  +GG  I +F++ +  GI     SSI
Sbjct: 236 RLDTIDIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSI 295

Query: 814 FIAAPILLFIYDWRA 828
           F+A  I   +   R 
Sbjct: 296 FVAIAIAYDVGLRRE 310


>gi|145631087|ref|ZP_01786862.1| protein export protein SecF [Haemophilus influenzae R3021]
 gi|148827378|ref|YP_001292131.1| preprotein translocase subunit SecF [Haemophilus influenzae PittGG]
 gi|144983372|gb|EDJ90854.1| protein export protein SecF [Haemophilus influenzae R3021]
 gi|148718620|gb|ABQ99747.1| protein export protein SecF [Haemophilus influenzae PittGG]
          Length = 324

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 154/309 (49%), Gaps = 5/309 (1%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                        +       +FM+ R  G  +S L  + S+  + T G N+G+DF GG+
Sbjct: 6   KDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGLDFTGGV 65

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                 ++  +L  +RS L    I     Q     ++ ++RL     DS     + E VK
Sbjct: 66  VFDTHFSQSANLEQIRSKLHENGIESPVVQTTGSVQDVMIRLPASNNDST----IGEHVK 121

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +     I++ E VGP +  EL +  +   + +   +LIY+  RF+W    G+I +
Sbjct: 122 SMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSIAS 181

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  D+  TLG F+   IE +LT VAA+L+++GYS+ND +VV+DR+R+N +     +   D
Sbjct: 182 LAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-RRLDTID 240

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +ID S+ +TL R++ TS+   + V+ +  +GG  I +F++ +  GI     SSIF+A  I
Sbjct: 241 IIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIAI 300

Query: 820 LLFIYDWRA 828
              +   R 
Sbjct: 301 AYDVGLRRE 309


>gi|294140348|ref|YP_003556326.1| protein-export membrane protein SecF [Shewanella violacea DSS12]
 gi|293326817|dbj|BAJ01548.1| protein-export membrane protein SecF [Shewanella violacea DSS12]
          Length = 315

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 171/299 (57%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     + F+R       +S++  + S+  L T G+N+G+DF GG  + +  ++PV
Sbjct: 1   MFQILSIKGTVNFLRHAVPISILSLILVLGSLASLATKGINWGLDFTGGTVVELEFSKPV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L V+R+ L S ++  +  QNF   ++ L+RL  +          +  V +   ++ P  
Sbjct: 61  NLEVLRAELSSDEMQGVVVQNFGSSRDILIRLPVKADIKSDTQ--VGYVMEAGNKLDPQV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +  E+VGP+I +EL  +G + V+++ I +LIY+  RF+W  A+G++  L  D+  TLG
Sbjct: 119 IQKRVEMVGPQIGKELAEQGGLAVLVALICILIYVSFRFEWRLAMGSVVALAHDVIITLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  ++F+LT +A VLT++GYS+ND +VV+DR+R+N           ++++ SI +T+
Sbjct: 179 VFSVLQLDFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKGGP-EEVVNTSITQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T+    + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 238 SRTIITTATTLVVVIALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296


>gi|165976491|ref|YP_001652084.1| preprotein translocase subunit SecF [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|190150395|ref|YP_001968920.1| preprotein translocase subunit SecD [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303253356|ref|ZP_07339505.1| preprotein translocase subunit SecF [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307249162|ref|ZP_07531167.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307257113|ref|ZP_07538886.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307263739|ref|ZP_07545345.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|165876592|gb|ABY69640.1| protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|189915526|gb|ACE61778.1| protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|302648038|gb|EFL78245.1| preprotein translocase subunit SecF [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306854332|gb|EFM86530.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306864384|gb|EFM96294.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306870860|gb|EFN02598.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 324

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 95/297 (31%), Positives = 162/297 (54%), Gaps = 4/297 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM+ R+ G   S++ +   I  + T G N+G+DF GG  +    ++P DLS VR
Sbjct: 16  PYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLSKVR 75

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             LE    G+   Q    +K  ++RL    GD     +++++V + +    P +TI++ E
Sbjct: 76  GLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQDL---DPAATIKSVE 132

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + +   +L+Y+  RF+   A+G I  L  D+  T+G F+   
Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTIGIFSFLQ 192

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N       ++ +++ID S+++TL R++ T
Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKI-RRVTSQEVIDISLSQTLSRTLMT 251

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           S+     V  +  +GG  I SF++ +  GI     SSI+IA  + L +   R    +
Sbjct: 252 SVTTLFVVAALFWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVK 308


>gi|117619487|ref|YP_856274.1| protein-export membrane protein SecF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560894|gb|ABK37842.1| protein-export membrane protein SecF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 315

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 162/299 (54%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR    GV  S L  + S+  LF  GLN+G+DF GG  + V   + V
Sbjct: 1   MFQILHFEKPIPFMRYARPGVVFSTLLMVISLFFLFDRGLNWGLDFTGGTTIEVGFQQSV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L  V   L+  +I   + Q+F   ++ L RL  + G  V Q      V      I P +
Sbjct: 61  SLDKVHQVLDEQKIEGATLQHFGSSRDVLFRLTPKEGVKVEQQ--GNEVLAAAKLIDPAA 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + ++ S + +LIY+ +RF+W  A+G I +L+ D+  TLG
Sbjct: 119 VLKRVEFVGPSVGDELATDGALAMLASILCILIYVAVRFEWRLAMGGILSLVHDVVITLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            FA F  EF+LT +AA++TL+GYS+ND +VV+DR+R+N +          ++D S+ ETL
Sbjct: 179 VFAYFQYEFDLTVLAALMTLVGYSLNDTIVVFDRLRENFRKVRKG-DTEYILDLSMTETL 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS   F+ VL + + GG +I  F++ M  G+     SSI++A+   +F    R 
Sbjct: 238 SRTIITSGLTFVVVLALLLKGGPLIHGFSVAMVIGVAFGTYSSIYVASSFAMFFGVKRE 296


>gi|91792762|ref|YP_562413.1| preprotein translocase subunit SecF [Shewanella denitrificans
           OS217]
 gi|91714764|gb|ABE54690.1| protein translocase subunit secF [Shewanella denitrificans OS217]
          Length = 315

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 161/295 (54%), Gaps = 3/295 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F L     A+ F+R       +S++  I S   L T G+N+G+DF GG  + +  ++P 
Sbjct: 1   MFQLFAVKDAVDFLRHAKPISIMSMILVIASFVSLGTQGINWGLDFTGGTVVELEFSKPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DLS +R  L S++      QNF    + LVRL  +          ++ +      +    
Sbjct: 61  DLSQLRGTLTSVEAQGAVVQNFGSSHDVLVRLPVKLDIKSDLQ--VKAIMDGALSLDADV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +  E VGP++ ++L  +G + VI++ I +LIY+  RF+W  A+G++  L  D+  TLG
Sbjct: 119 IQKRVEFVGPQVGKQLAEQGGLAVIVALICILIYVSFRFEWRLAMGSVAALAHDVIVTLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  +EF+LT +A +LT+IGYS+ND +VVYDR+R+N           ++++ SI +T+
Sbjct: 179 VFSVLQLEFDLTVLAGLLTVIGYSLNDTIVVYDRIRENFLKMRKGGPI-EVVNTSITQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            R+V T+    + V  + + GGS+I  FA  +  GI V   SSI++A+ + + + 
Sbjct: 238 SRTVITTGTTLVVVAALFIKGGSMIHGFATALLLGIFVGTYSSIYVASYLAIKLG 292


>gi|254455897|ref|ZP_05069326.1| protein-export membrane protein SecD [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082899|gb|EDZ60325.1| protein-export membrane protein SecD [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 517

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 183/519 (35%), Positives = 307/519 (59%), Gaps = 9/519 (1%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   ++  ++   + +LIA  N        +F  +    +I+LGLDL+GGS+L+LE+D  
Sbjct: 5   SKLRILFITLFSLLFVLIASSNLF------KFDDSFFDKKINLGLDLQGGSYLLLEIDNA 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   LQ  +  +R++ K++ I + +++     I  +    + K+ I D  T     +N
Sbjct: 59  PVIEQKLQNLTTSIRNYFKEKDIKINNIKIENQNIYFNV-LEKNKQTIIDTFTDENSDIN 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                     L +  T     +  S+  +  + + + +Q++EI+R+RID++G +E  I +
Sbjct: 118 PYYPRFKSHQLEIEDTGLNFKLNFSRQGLIVLKTSSQDQAIEIVRRRIDEVGTNEPNILK 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
            G++RIL++LPG  DP R++ LLG TA ++F  V  +++    +  ++F    D  +  V
Sbjct: 178 RGNNRILVELPGLDDPMRVKSLLGKTANLTFRFVTNDDNDSFGVEKLKFEDGID--EATV 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             ++ ISG +L  A    D +T++ +V  S D +GA+RF + T   IGK LA+VLDG+++
Sbjct: 236 SKRIIISGDNLLDAQPKMDTQTNQTIVSFSLDRVGAKRFGKATSTGIGKQLAIVLDGKII 295

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           +APV+   I SG  QISG FT +TA  LA +LR+G+LP  LNI+EER VG DLG DSI  
Sbjct: 296 SAPVVRDTIASGSGQISGGFTFQTATDLALLLRSGALPAPLNIIEERTVGPDLGQDSINA 355

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  A+  G +L+++FM V Y  +GL+ + ++ +N+ + L +L+L  ATLTLP IAGI+L 
Sbjct: 356 GMIALAIGFLLVIIFMFVKYRVFGLITNVTLIINLFILLGILTLFEATLTLPGIAGIILT 415

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+ ERI+EE R   +   + D G++++ + I D+NIT L+A V+LFF G G
Sbjct: 416 VGMAVDANVLIFERIKEELRDENNNIVAFDSGYTKSRTAIIDANITTLLAAVILFFMGSG 475

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            V+GF++T+G+ I  ++F+   I R      +   + K 
Sbjct: 476 PVKGFSVTLGVGIFTTLFSVYFIARLFTSLYVSKNRDKE 514



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 82/178 (46%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++ I  G++ + I  + ++I+++++++  F L    TLI+++   LG   LF 
Sbjct: 343 TVGPDLGQDSINAGMIALAIGFLLVIIFMFVKYRV-FGLITNVTLIINLFILLGILTLFE 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+++ ++    +I      D    ++    +  
Sbjct: 402 ATLTLPGIAGIILTVGMAVDANVLIFERIKEELRDENNNI---VAFDSGYTKSRTAIIDA 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ + +   G   +  F++ +  GI     S  FIA               ++
Sbjct: 459 NITTLLAAVILFFMGSGPVKGFSVTLGVGIFTTLFSVYFIARLFTSLYVSKNRDKEKL 516


>gi|260582876|ref|ZP_05850661.1| protein-export membrane protein SecF [Haemophilus influenzae NT127]
 gi|260094089|gb|EEW77992.1| protein-export membrane protein SecF [Haemophilus influenzae NT127]
          Length = 325

 Score =  221 bits (562), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 91/315 (28%), Positives = 157/315 (49%), Gaps = 5/315 (1%)

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
           +++                +       +FM+ R  G  +S L  + S+  + T G N+G+
Sbjct: 1   MMKLFTKDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGL 60

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           DF GG+      ++  +L  +RS L    I     Q     ++ ++RL     DS     
Sbjct: 61  DFTGGVVFDTHFSQSANLEQIRSKLHENGIESPVVQTTGSVQDVMIRLPASNNDST---- 116

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E VK  +  +     I++ E VGP +  EL +  +   + +   +LIY+  RF+W   
Sbjct: 117 IGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLG 176

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            G+I +L  D+  TLG F+   IE +LT VAA+L+++GYS+ND +VV+DR+R+N +    
Sbjct: 177 FGSIASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-R 235

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            +   D+ID S+ +TL R++ TS+   + V+ +  +GG  I +F++ +  GI     SSI
Sbjct: 236 RLDTIDIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSI 295

Query: 814 FIAAPILLFIYDWRA 828
           F+A  I   +   R 
Sbjct: 296 FVAIAIAYDVGLRRE 310


>gi|260596779|ref|YP_003209350.1| preprotein translocase subunit SecF [Cronobacter turicensis z3032]
 gi|260215956|emb|CBA28575.1| Protein-export membrane protein secF [Cronobacter turicensis z3032]
          Length = 323

 Score =  221 bits (562), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 166/301 (55%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W   IS L  + SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFAISGLLLVASIVVMGVRGFNWGLDFTGGTVIEIGLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL ++R +LE     +   QNF   ++ +VR+    G++  Q    +++         
Sbjct: 65  PADLDLMRESLEKAGFEEPLLQNFGSSRDIMVRMPPAQGETGGQALGTKVLTVINEATGQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++++ +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 MGVLSLFRIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG+++  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLKRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|308050485|ref|YP_003914051.1| protein-export membrane protein SecD [Ferrimonas balearica DSM
           9799]
 gi|307632675|gb|ADN76977.1| protein-export membrane protein SecD [Ferrimonas balearica DSM
           9799]
          Length = 614

 Score =  221 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 156/522 (29%), Positives = 271/522 (51%), Gaps = 37/522 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     N + LGLDLRGG + ++EVD ++ V+   +    + R+ L+++ +
Sbjct: 104 NLAPATPEWLKSLGGNPMKLGLDLRGGVNFLMEVDMNEAVHKQQEQIVTDFRADLREQRL 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R + + + + F D+   E     +      +      D             I   
Sbjct: 164 RYSGVRVVGDAVEVRFRDAAVAEQAYSYLRGRNANLVFSQPDDL-----------VILAT 212

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  + ++  +A+ Q++ I+R R++++G++E  +QR G+ RI ++LPG QD +R +++L
Sbjct: 213 LSEPYLKEIKEYALNQNINILRNRVNELGVAEPVVQRQGAERITVELPGVQDTARAKEIL 272

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V  N             G R   D DG   ++E +V ++G H+ GA + F
Sbjct: 273 GATATLEFRMVAQNVDLNAATRGLVPPGTRLYEDRDGRPVVLEQQVILTGDHITGAQSGF 332

Query: 262 DPKTHKPVVDISFDEMGARR-----------------FFEVTRDNIGKPLAVVLDGRVLT 304
              +   V        G +                   ++ T +              + 
Sbjct: 333 SETSQPQVNINLDAAGGNKMADFTRDKIGAAMATVFIEYKPTGERNADGSPQFDKIEEVI 392

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                QA      +I+G  +   A  LA +LRAG+L   + IV+ER +G  LG ++I  G
Sbjct: 393 NVATIQARLGRNFRITGIGSPAEAHNLALLLRAGALIAPITIVQERTIGPSLGQENINNG 452

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G++ +V+FM + Y K+GL+A  ++ +N+++ + ++S++  ATLTLP IAGIVL 
Sbjct: 453 MAALMWGMLAVVVFMAIYYRKFGLIAVGALVVNLVMIVGIMSMIPGATLTLPGIAGIVLT 512

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE +  +SV  ++  G+S A STI D+NIT LI  ++LF  G G
Sbjct: 513 VGMAVDGNVLIFERIREELKAGRSVQQAIHEGYSNALSTIADANITTLITALILFAVGTG 572

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            V+GFA+T+ + I  SMFT+I   RA++  +   K++K +DI
Sbjct: 573 PVKGFAVTLMIGIATSMFTSIVGSRAVVNALWGGKRLKKLDI 614



 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 98/248 (39%), Gaps = 6/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                      ++            N    +  L R     G           +  +   
Sbjct: 368 FIEYKPTGERNADGSPQFDKIEEVINVATIQARLGRNFRITGIGSPAEAHNLALLLRAGA 427

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   TI     +GP + +E I  G+  ++   +A+++++ I ++  F L A+  L++++
Sbjct: 428 LIAPITIVQERTIGPSLGQENINNGMAALMWGMLAVVVFMAIYYR-KFGLIAVGALVVNL 486

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ +K      S +  I +
Sbjct: 487 VMIVGIMSMIPGATLTLPGIAGIVLTVGMAVDGNVLIFERIREELKA---GRSVQQAIHE 543

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LF 822
             +  L      ++   I+ L +   G   +  FA+ +  GI  +  +SI  +  ++   
Sbjct: 544 GYSNALSTIADANITTLITALILFAVGTGPVKGFAVTLMIGIATSMFTSIVGSRAVVNAL 603

Query: 823 IYDWRAKN 830
               R K 
Sbjct: 604 WGGKRLKK 611



 Score = 45.1 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  IG L A PN   +    +          ++ LD            
Sbjct: 4   KYPMWKNLLVIFVIAIGALYAAPNLYGEDPALQI-----SATRNVALD------------ 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D++++ L+ EG+   S+   + +I   F+++  +    + V   L
Sbjct: 47  ---------SATLDQVQTALQGEGLSAKSVIMEEGQILARFSNAEDQIEAKEVVAQAL 95


>gi|313673202|ref|YP_004051313.1| protein-export membrane protein secd [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939958|gb|ADR19150.1| protein-export membrane protein SecD [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 517

 Score =  221 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 175/537 (32%), Positives = 295/537 (54%), Gaps = 41/537 (7%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
               I   ++  + L    P                  RI+LGLDL+GG H++L V+ + 
Sbjct: 4   KLRWITILIVFVVSLFFMFP---------------LDKRINLGLDLKGGMHVILGVETEK 48

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVN 123
            V   +   + ++R  L+   I    +++ ++ KI++  +D   +  + D ++     + 
Sbjct: 49  AVQAKIDTLTGQIRKELRNSKINFAFVQKNESGKISIGLSDPAERNKVKDLISKNYPILK 108

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                  +K + ++    E+          ++  +A+EQ++++IR R+DQ G++E  IQR
Sbjct: 109 ESGLNSDEKVIELSLDTDEV---------KRIKDYAVEQAVQVIRNRVDQFGVNEPVIQR 159

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG----- 238
            G   IL+QL G  DP R  +L+G TA++ F+ +  N + +  +       D        
Sbjct: 160 QGKEHILVQLAGITDPERAVKLIGKTAQLKFYLLDENANNEETIKSGNIPPDDIILYGKK 219

Query: 239 -----------NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                        Y+++    ++G +L  A      + ++P V I FD  G++ F E+T 
Sbjct: 220 IDKVTGQIVSTIPYVLKKDAVLTGDYLLEAEVRISSQFNEPYVSIKFDPAGSKIFEEITA 279

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
           +N+ K +A+VLD  V +APVI + I  G+AQISG+FT+E A  LA +LRAGSLP  + I+
Sbjct: 280 ENVNKRMAIVLDDNVYSAPVIRERIAGGEAQISGSFTLEEAKDLAIVLRAGSLPAPVKIL 339

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E R +G  LG DSI KG  A + G+  +++FM++ Y   G +A  ++  N I+ L  + +
Sbjct: 340 ENRTIGPSLGQDSIKKGIWAGIIGVAAVIIFMLIYYKFSGFIASIALLSNAIIILGAMGM 399

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLTLP IAG++L +G+A+D+N+L+ ERIREE R  ++   +L+ GF +A STI DSN
Sbjct: 400 FKATLTLPGIAGLILTMGMAIDANVLIFERIREELRLGRTPMNALEAGFEKAMSTIIDSN 459

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           IT LIA +VLF FG G V+GFA+T+ + IL S+FTA+++ + + + +   K++K + 
Sbjct: 460 ITTLIAGLVLFQFGTGPVKGFAVTLTIGILSSIFTAVTLSKTIFLTLYGNKEIKKLS 516



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 88/176 (50%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP + ++ I+KGI   II   A++I++ I +K+     A   L+ +    LG   +F 
Sbjct: 343 TIGPSLGQDSIKKGIWAGIIGVAAVIIFMLIYYKFS-GFIASIALLSNAIIILGAMGMFK 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +++  V++++R+R+ ++L     +  + ++    + +   + +
Sbjct: 402 ATLTLPGIAGLILTMGMAIDANVLIFERIREELRL---GRTPMNALEAGFEKAMSTIIDS 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   I+ L +  +G   +  FA+ +  GI+ +  +++ ++  I L +Y  +    
Sbjct: 459 NITTLIAGLVLFQFGTGPVKGFAVTLTIGILSSIFTAVTLSKTIFLTLYGNKEIKK 514


>gi|271499571|ref|YP_003332596.1| protein-export membrane protein SecF [Dickeya dadantii Ech586]
 gi|270343126|gb|ACZ75891.1| protein-export membrane protein SecF [Dickeya dadantii Ech586]
          Length = 323

 Score =  221 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 161/301 (53%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W   +S L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYWAFALSGLLLILSIVVMGVRGFNWGLDFTGGTVIEISLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            VDL  +R  L+     D   QNF   ++ +VR+     +S  Q    ++V         
Sbjct: 65  SVDLEQMREALQKAGFADPLVQNFGSSRDIMVRMPPAHDESGGQALGSKVVNVINASTGQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + I +LIY+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMAALICILIYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 MGVLSLFNIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG+++  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGAMLKGFSLTMLIGVTIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|207721607|ref|YP_002252046.1| protein-export membrane protein secd [Ralstonia solanacearum MolK2]
 gi|206586768|emb|CAQ17353.1| protein-export membrane protein secd [Ralstonia solanacearum MolK2]
          Length = 627

 Score =  221 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 168/515 (32%), Positives = 274/515 (53%), Gaps = 26/515 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL   P +L                + LGLDLRGG H +L+VD +  +   L   
Sbjct: 109 IVALNLLSGSPRWLTAIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+ +G+    + +    I++ F++    +     +    +        +    
Sbjct: 160 AGDIRTQLRDKGVRHNGIERSGTTISIKFSNPDEADRARGLLADSTR--------ELAFA 211

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
              T     ++   +   + +V  +A++Q++  +  R++++G+SE  IQ+ G  RI++QL
Sbjct: 212 TDKTADGVTLTGTFTAAAMKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +      PN +           G        G   L++ +V 
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARMADPNATGIPRLTDPVPLGDELFTQGRGAPVLLQKQVI 331

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +N A+A FD   H P VDI+ D  G R   +++RDNIGK +A+VL  +    +  
Sbjct: 332 FTGDRINSASAGFDQN-HNPSVDITLDGQGGRMLRDISRDNIGKRMAIVLFEKGKGEVLT 390

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  ++E+A  LA +LRAGSL   + I+EER +G  LG+D+I +G 
Sbjct: 391 VATIQSELGSRFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKQGF 450

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            +   G   I +FM++ Y  +G  +  S+ +NV L +A+LS+L ATLTLP IA I L +G
Sbjct: 451 DSAAYGFAAISVFMVLYYMLFGAFSVVSLGVNVFLLIAILSMLQATLTLPGIAAIALALG 510

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NERIREE R   S   ++  GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 511 MAIDANVLINERIREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFA+   L IL SMF+A+   R+++      KK 
Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I++G         A+ +++ + +   F   ++ +L +++   +
Sbjct: 429 MEIIEERTIGPSLGADNIKQGFDSAAYGFAAISVFMVLYY-MLFGAFSVVSLGVNVFLLI 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++      S +  I       
Sbjct: 488 AILSMLQATLTLPGIAAIALALGMAIDANVLINERIREELR---NGASPQMAIAAGFERA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FA+    GI+ +  S++F    ++   Y  + 
Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604

Query: 829 K 829
           K
Sbjct: 605 K 605



 Score = 37.7 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34
          R   W  ++  +   IG L  LPNF  ++   +
Sbjct: 3  RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQ 35


>gi|94311879|ref|YP_585089.1| preprotein translocase subunit SecF [Cupriavidus metallidurans
           CH34]
 gi|93355731|gb|ABF09820.1| SecYEG protein translocase auxiliary subunit [Cupriavidus
           metallidurans CH34]
          Length = 324

 Score =  221 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 159/305 (52%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S L    ++  L+  GL+  I+F GG  + V   + VD
Sbjct: 1   MEFFRIKRDIPFMKHALIFNVVSFLTFAAAVFFLWHKGLHLSIEFTGGTVMEVNYQQAVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ---TRVLEMVKKKITEIVP 647
           L  VR  +  L   D+  QNF   ++ ++RL  Q G    Q    +  E V   +T   P
Sbjct: 61  LEKVRGQVSKLGYSDVQVQNFGTSRDVMIRLPLQKGPDGKQVTSAQQSEQVMGALTAASP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G++ ++     ++IY+  RF+W FA+  I   + D+   
Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLCVVAGIVIYLSFRFEWKFAVAGIIANLHDVVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AA+L ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAAILAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TMSRTIITHGSTEMMVLSMFFFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|229846327|ref|ZP_04466435.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
 gi|229810420|gb|EEP46138.1| preprotein translocase subunit SecF [Haemophilus influenzae 7P49H1]
          Length = 324

 Score =  221 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 154/309 (49%), Gaps = 5/309 (1%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                        +       +FM+ R  G  +S L  + S+  + T G N+G+DF GG+
Sbjct: 6   KDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGLDFTGGV 65

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                 ++  +L  +RS L    I     Q     ++ ++RL     DS     + E VK
Sbjct: 66  VFDTHFSQSANLEQIRSKLHENGIESPIVQTTGSVQDVMIRLPASNNDST----IGEHVK 121

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +     I++ E VGP +  EL +  +   + +   +LIY+  RF+W    G+I +
Sbjct: 122 SMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSIAS 181

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  D+  TLG F+   IE +LT VAA+L+++GYS+ND +VV+DR+R+N +     +   D
Sbjct: 182 LAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-RRLDTID 240

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +ID S+ +TL R++ TS+   + V+ +  +GG  I +F++ +  GI     SSIF+A  I
Sbjct: 241 IIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSIFVAIAI 300

Query: 820 LLFIYDWRA 828
              +   R 
Sbjct: 301 AYDVGLRRE 309


>gi|92114952|ref|YP_574880.1| preprotein translocase subunit SecD [Chromohalobacter salexigens
           DSM 3043]
 gi|91798042|gb|ABE60181.1| protein-export membrane protein SecD [Chromohalobacter salexigens
           DSM 3043]
          Length = 616

 Score =  221 bits (561), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 169/522 (32%), Positives = 271/522 (51%), Gaps = 36/522 (6%)

Query: 30  SMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++ D  P  +       + LGLDL+GG H +LEVD D  V   L+  +  +R  L+ E I
Sbjct: 105 NLADATPGWLQALSATPMKLGLDLQGGVHFLLEVDMDAAVEQRLEANASAVRDLLRDERI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                      IT  FA++  +      +T              +           +++ 
Sbjct: 165 RYRDTSIDGRAITFQFANADDRNAARGLITDQFPDFEYSTPDTER--------GASLTMT 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +   +  +  +A+ Q++  IR R++++G+SE  +QR G  RI+++LPG QD +  ++++
Sbjct: 217 FTDQAVQDLQDYAVNQNLTTIRNRVNELGVSEPLVQRQGPSRIVVELPGVQDTAAAKRIV 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F                   R+ +G    +   + ++G H++ A+ +FD    
Sbjct: 277 GATANLEFRLEA-RPDTPEREIETLPFRNDEGRSADLMRDIIVTGDHVSSASRSFDENN- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+I+ D  G       TR NIG+ +AVV          +                  
Sbjct: 335 RPQVNINLDGTGGSMMSRATRANIGRNMAVVFIEHKTRTRTVMEDGEEVEKREAYTERGI 394

Query: 309 -----NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+    + +I+G  +   AG LA +LR+GSL   +   +ER +G  LG+ +I +
Sbjct: 395 ISLATIQSTLGNRFRITGLESASEAGDLALLLRSGSLAAPIYFAQERTIGPSLGAQNIAQ 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  ++  GL+L+VLFM+  Y  +G+VA+ S+ LN++L +A +SLLGATLTLP IAGIVL 
Sbjct: 455 GIMSVEVGLLLVVLFMLARYKAFGVVANVSLGLNLVLLVAAMSLLGATLTLPGIAGIVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+ ERIREE R    V  ++  GF RA+++I D+NIT L+  V+LF  G G
Sbjct: 515 LGMAVDANVLIFERIREELRAKMPVQQAIHTGFERAFTSIVDANITTLLVAVILFSIGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            V+GFA+T+ L IL SMFTAI + RAM+   I  + +K I I
Sbjct: 575 PVKGFAVTLSLGILTSMFTAIMVSRAMINLTIGGRPLKKIWI 616



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 95/251 (37%), Gaps = 4/251 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +         +       +     +    +    ++ L       G   A       +  
Sbjct: 367 IEHKTRTRTVMEDGEEVEKREAYTERGIISLATIQSTLGNRFRITGLESASEAGDLALLL 426

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           +   +           +GP +  + I +GI+ V +  + +++++  R+K  F + A  +L
Sbjct: 427 RSGSLAAPIYFAQERTIGPSLGAQNIAQGIMSVEVGLLLVVLFMLARYK-AFGVVANVSL 485

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L++   +   +L G    L  +A ++  +G +V+  V++++R+R+ ++     +  +  
Sbjct: 486 GLNLVLLVAAMSLLGATLTLPGIAGIVLTLGMAVDANVLIFERIREELRA---KMPVQQA 542

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I           V  ++   +  + +   G   +  FA+ ++ GI+ +  ++I ++  ++
Sbjct: 543 IHTGFERAFTSIVDANITTLLVAVILFSIGTGPVKGFAVTLSLGILTSMFTAIMVSRAMI 602

Query: 821 LFIYDWRAKNA 831
                 R    
Sbjct: 603 NLTIGGRPLKK 613


>gi|239994271|ref|ZP_04714795.1| preprotein translocase subunit SecD [Alteromonas macleodii ATCC
           27126]
          Length = 614

 Score =  221 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 161/530 (30%), Positives = 283/530 (53%), Gaps = 38/530 (7%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N  P +    +   +    + LGLDLRGG H ++EVD  + +   L+      R+
Sbjct: 99  YYVAMNLAPDTP--EWLEGLGGAPMKLGLDLRGGVHFLMEVDMTEVIAKSLEDAEGGFRT 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++EGI    ++Q+ + I ++F D    +     +               +        
Sbjct: 157 SLREEGIRYRGVKQVDDHIDITFRDEDALDKAEFFLRN-----------QSRDLTFNQVD 205

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           +  +  + +++ + ++  +A++Q++ IIR R++Q+G++E  +Q+ G+ RI++QLPG QD 
Sbjct: 206 DLTLRAIFAESKLQEIRDNAVKQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDT 265

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           +R +++L  TA + F  V   N  +         G + + D  G   L+E ++ ++G H+
Sbjct: 266 ARAKEILNATATLEFRMVDQKNDIRDALNGRVPPGSQVIEDQQGIPQLLEKRIMLTGSHI 325

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------- 301
                +   +   P V+IS D  G  +    TR NIGKP+A V                 
Sbjct: 326 ID-ANSGVDEYGLPNVNISLDSEGGNKMSRSTRGNIGKPMATVFIEYKSTGERNKDGKLV 384

Query: 302 -----VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +    +A    K QI+G  + + A  LA +LRAG+L   + IVEER VG  L
Sbjct: 385 FEKHEQVISVATIRAQLGSKFQITGLDSPKEARDLALLLRAGALIAPIQIVEERTVGPSL 444

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415
           G ++I  G  AI+ GL  +++FM++ Y  +G+VA+ ++  N+++ + ++S++  ATLTLP
Sbjct: 445 GKENIELGMQAIMYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLP 504

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            +AGIVL +G+AVD+N+L+ ERIREE R  +S   ++  G+  A+STI D+NIT  IA +
Sbjct: 505 GMAGIVLTVGMAVDANVLIFERIREEIRDGRSPQHAIHQGYDSAFSTILDANITTFIAGL 564

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +LF  G G ++GF+IT+ + I  SMFTAI + R ++  +   ++++ + I
Sbjct: 565 ILFAVGTGPIKGFSITLMIGIATSMFTAILVTRVIVNAVWGGRRVEKLAI 614



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 38/205 (18%), Positives = 89/205 (43%), Gaps = 6/205 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  +   ++    I     VGP + +E I  G+  ++    A+L+++ I 
Sbjct: 411 DSPKEARDLALLLRAGALIAPIQIVEERTVGPSLGKENIELGMQAIMYGLAAVLVFMLIY 470

Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           +K  F + A   LI ++   +G  ++  G    L  +A ++  +G +V+  V++++R+R+
Sbjct: 471 YK-AFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIRE 529

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++      S +  I +  +      +  ++  FI+ L +   G   I  F+I +  GI 
Sbjct: 530 EIRD---GRSPQHAIHQGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMIGIA 586

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKN 830
            +  ++I +   I+       R + 
Sbjct: 587 TSMFTAILVTRVIVNAVWGGRRVEK 611


>gi|325197820|gb|ADY93276.1| protein-export membrane protein SecD [Neisseria meningitidis G2136]
          Length = 617

 Score =  221 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.1 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + L+  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|296101530|ref|YP_003611676.1| preprotein translocase subunit SecF [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055989|gb|ADF60727.1| preprotein translocase subunit SecF [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 323

 Score =  221 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 166/301 (55%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVWDFMRWDYWAFGISGLLLILSIVVMGVKGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PVD+  +R +L+     +   QNF   ++ +VR+      + +Q    ++V         
Sbjct: 65  PVDMDQMRQSLQKAGFEEPLLQNFGSSRDIMVRMPPVHDANGSQELGSKVVSVINETTSQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++++ I++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NATVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVVIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 MGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|332141985|ref|YP_004427723.1| preprotein translocase subunit SecD [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552007|gb|AEA98725.1| preprotein translocase subunit SecD [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 614

 Score =  221 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 162/530 (30%), Positives = 284/530 (53%), Gaps = 38/530 (7%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N  P +    +   +    + LGLDLRGG H ++EVD  + +   L+      R+
Sbjct: 99  YYVAMNLAPDTP--EWLEGLGGAPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRT 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++EGI    ++Q+ + I ++F D    +     +               +        
Sbjct: 157 SLREEGIRYRGVKQVDDHIDITFRDEDTLDKAEFFLRN-----------QSRDLTFNQID 205

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           +  +  + +++ + ++  +A++Q++ IIR R++Q+G++E  +Q+ G+ RI++QLPG QD 
Sbjct: 206 DLTLRAIFAESKLQEIRDNAVKQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDT 265

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           +R +++L  TA + F  V   N  +         G + + D  G   L+E ++ ++G H+
Sbjct: 266 ARAKEILNATATLEFRMVDQKNDIRDALNGRVPPGSQVIEDQQGIPQLLEKRIMLTGSHI 325

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------- 301
                +   +   P V+IS D  G  +    TR NIGKP+A V                 
Sbjct: 326 ID-ANSGVDEYGLPNVNISLDSEGGNKMSRSTRGNIGKPMATVFIEYKSTGERNDDGKLV 384

Query: 302 -----VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +    +A    K QI+G  + + A  LA +LRAG+L   + IVEER VG  L
Sbjct: 385 FEKHEQVISVATIRAQLGSKFQITGLDSPKEARDLALLLRAGALIAPIQIVEERTVGPSL 444

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415
           G ++I  G  AI+ GL  +++FM++ Y  +G+VA+ ++  N+++ + ++S++  ATLTLP
Sbjct: 445 GKENIELGMQAIIYGLAAVLVFMLIYYKAFGVVANIALITNLVMIVGIMSMIPGATLTLP 504

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            +AGIVL +G+AVD+N+L+ ERIREE R+ +S   ++  G+  A+STI D+NIT  IA +
Sbjct: 505 GMAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIHHGYDSAFSTILDANITTFIAGL 564

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +LF  G G ++GF+IT+ + I  SMFTAI + R ++  +   K+++ + I
Sbjct: 565 ILFAVGTGPIKGFSITLMIGIATSMFTAILVTRVIVNAVWGGKRVEKLAI 614



 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 88/205 (42%), Gaps = 6/205 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  +   ++    I     VGP + +E I  G+  +I    A+L+++ I 
Sbjct: 411 DSPKEARDLALLLRAGALIAPIQIVEERTVGPSLGKENIELGMQAIIYGLAAVLVFMLIY 470

Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           +K  F + A   LI ++   +G  ++  G    L  +A ++  +G +V+  V++++R+R+
Sbjct: 471 YK-AFGVVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIRE 529

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++      S +  I    +      +  ++  FI+ L +   G   I  F+I +  GI 
Sbjct: 530 ELRE---GRSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMIGIA 586

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKN 830
            +  ++I +   I+       R + 
Sbjct: 587 TSMFTAILVTRVIVNAVWGGKRVEK 611


>gi|325141838|gb|EGC64283.1| protein-export membrane protein SecD [Neisseria meningitidis
           961-5945]
          Length = 617

 Score =  221 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596


>gi|303250184|ref|ZP_07336386.1| preprotein translocase subunit SecF [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252705|ref|ZP_07534596.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651247|gb|EFL81401.1| preprotein translocase subunit SecF [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859737|gb|EFM91759.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 318

 Score =  221 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 95/297 (31%), Positives = 162/297 (54%), Gaps = 4/297 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM+ R+ G   S++ +   I  + T G N+G+DF GG  +    ++P DLS VR
Sbjct: 16  PYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLSKVR 75

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             LE    G+   Q    +K  ++RL    GD     +++++V + +    P +TI++ E
Sbjct: 76  GLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQDL---DPAATIKSVE 132

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + +   +L+Y+  RF+   A+G I  L  D+  T+G F+   
Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTIGIFSFLQ 192

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N       ++ +++ID S+++TL R++ T
Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKI-RRVTSQEVIDISLSQTLSRTLMT 251

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           S+     V  +  +GG  I SF++ +  GI     SSI+IA  + L +   R    +
Sbjct: 252 SVTTLFVVAALFWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVK 308


>gi|209695856|ref|YP_002263786.1| preprotein translocase subunit SecF [Aliivibrio salmonicida
           LFI1238]
 gi|208009809|emb|CAQ80116.1| protein-export membrane protein SecF [Aliivibrio salmonicida
           LFI1238]
          Length = 316

 Score =  221 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 160/299 (53%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR        S+L  + SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQIMKAEKTIDFMRWSKPAFFFSMLMIVASIATLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L  +R  L++   GD + QNF   ++ +VRLQ + G    +    +++           
Sbjct: 61  QLEDIRGALQAKGFGDATVQNFGTARDVIVRLQPREG-MKGEQLGNQIISAIKEGTGDQV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S + +L Y+ IRF+W  A GA+  L  DI  TLG
Sbjct: 120 EMRRIEFVGPNVGGELAESGGLAILVSLLCILAYVSIRFQWRLAAGAVLALAHDIIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   IE +LT +AA+LT++GYS+ND +VV+DR+R+N           ++++ SI +TL
Sbjct: 180 IFSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGAP-EEIMNDSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + V GG++I  FA+ +  GI V   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSATTLFVVIALFVQGGAMIHGFALALLLGITVGTYSSIYVASALALKLGITRE 297


>gi|119468099|ref|ZP_01611225.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Alteromonadales bacterium TW-7]
 gi|119448092|gb|EAW29356.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Alteromonadales bacterium TW-7]
          Length = 317

 Score =  221 bits (561), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 100/291 (34%), Positives = 167/291 (57%), Gaps = 2/291 (0%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             ++FM  R   +G S L  + SI  +FT GLN+G+DF GG  + V  ++P DL  VR+ 
Sbjct: 9   RTLRFMSLRKVAMGFSTLLIVASIVSMFTKGLNFGLDFTGGTAVEVGFSQPADLKKVRNV 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L      D S Q F   ++ LVRL  +  D  A+  +   V   + +      ++  E V
Sbjct: 69  LGENGFADASVQLFGSSQDILVRLAPRGSDVKAEV-IGNQVIDALKKADDSVVMRRIEFV 127

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  +L  +G + ++ + I +LIY+  RF+W FA+GA+  L+ D+  TLG F++ G+E
Sbjct: 128 GPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITLGLFSVLGLE 187

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AA+L +IGYS+ND +VV DR+R+N +         ++ID S+ +TL R++ TS+
Sbjct: 188 FDLTILAAILAVIGYSLNDTIVVSDRIRENFRK-VRIDDTVEIIDISLTQTLNRTLVTSI 246

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + ++ + VWGG  I  FA  + FG+ +   SS+++A+ + L +   + 
Sbjct: 247 TTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVALAMGVSKE 297


>gi|260425955|ref|ZP_05779934.1| protein-export membrane protein SecF [Citreicella sp. SE45]
 gi|260420447|gb|EEX13698.1| protein-export membrane protein SecF [Citreicella sp. SE45]
          Length = 331

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 103/306 (33%), Positives = 173/306 (56%), Gaps = 7/306 (2%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+ D  +  F +     +GIS +  + ++      GLNYGIDF GG  +   + +
Sbjct: 1   MRHLRLVKDETSFDFFKHWKLWLGISGVMLMLAMVSFGVRGLNYGIDFMGGTTIRTESAQ 60

Query: 588 PVDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
           PVD+   R  +++L IGD              +   +VR+Q Q  +       +  V+  
Sbjct: 61  PVDVGAYRQAIDALGIGDSTISEVFDPSFGPEQNVAMVRIQAQDDEEAVTPETIAAVEAA 120

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           + ++ P     + E VGPK+S ELI+   + V ++  A+L+YIW+RF+W FA GA+  L+
Sbjct: 121 LQQVAPDIRFVSVESVGPKVSGELIQTAFLAVALAIGAVLVYIWLRFEWQFAAGAVLALV 180

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            D+  T+G F+  GI F+L+ +AA+LT++GYS+ND VVV+DR+R+N+  Y      ++++
Sbjct: 181 HDVLLTIGVFSEVGIRFDLSIIAALLTIVGYSLNDTVVVFDRVRENLIKYKKR-PLKEVL 239

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + SINETL R++ TS+   +++  +   GG VI  F   M +G+ V   SSIF+A+ +LL
Sbjct: 240 NISINETLSRTIMTSLTTLLALFALFALGGDVIRGFVFAMIWGVFVGTYSSIFVASALLL 299

Query: 822 FIYDWR 827
           ++   R
Sbjct: 300 WLGVKR 305


>gi|46143548|ref|ZP_00204504.1| COG0341: Preprotein translocase subunit SecF [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208540|ref|YP_001053765.1| preprotein translocase subunit SecF [Actinobacillus
           pleuropneumoniae L20]
 gi|307245979|ref|ZP_07528061.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307250321|ref|ZP_07532271.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307254957|ref|ZP_07536776.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259395|ref|ZP_07541120.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|126097332|gb|ABN74160.1| protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|306852914|gb|EFM85137.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306857648|gb|EFM89754.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306862075|gb|EFM94050.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866331|gb|EFM98194.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 324

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 162/297 (54%), Gaps = 4/297 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM+ R+ G   S++ +   I  + T G N+G+DF GG  +    ++P DLS VR
Sbjct: 16  PYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLSKVR 75

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             LE    G+   Q    +K  ++RL    GD     +++++V + +    P +TI++ E
Sbjct: 76  GLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQDL---DPAATIKSVE 132

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + +   +L+Y+  RF+   A+G I  L  D+  T+G F+   
Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTIGIFSFLQ 192

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N       I+ +++ID S+++TL R++ T
Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKI-RRINSQEVIDISLSQTLSRTLMT 251

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           S+     V  +  +GG  I SF++ +  GI     SSI+IA  + L +   R    +
Sbjct: 252 SVTTLFVVSALYWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVK 308


>gi|16272199|ref|NP_438409.1| preprotein translocase subunit SecF [Haemophilus influenzae Rd
           KW20]
 gi|260580877|ref|ZP_05848702.1| protein-export membrane protein SecF [Haemophilus influenzae RdAW]
 gi|319775890|ref|YP_004138378.1| protein-export membrane protein SecF [Haemophilus influenzae F3047]
 gi|319896574|ref|YP_004134767.1| protein-export membrane protein secf [Haemophilus influenzae F3031]
 gi|329123739|ref|ZP_08252299.1| protein-export membrane protein SecF [Haemophilus aegyptius ATCC
           11116]
 gi|1173416|sp|P44590|SECF_HAEIN RecName: Full=Protein-export membrane protein secF
 gi|1573204|gb|AAC21907.1| protein-export membrane protein (secF) [Haemophilus influenzae Rd
           KW20]
 gi|260092500|gb|EEW76438.1| protein-export membrane protein SecF [Haemophilus influenzae RdAW]
 gi|317432076|emb|CBY80426.1| protein-export membrane protein SecF [Haemophilus influenzae F3031]
 gi|317450481|emb|CBY86698.1| protein-export membrane protein SecF [Haemophilus influenzae F3047]
 gi|327469938|gb|EGF15403.1| protein-export membrane protein SecF [Haemophilus aegyptius ATCC
           11116]
          Length = 325

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 91/315 (28%), Positives = 157/315 (49%), Gaps = 5/315 (1%)

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
           +++                +       +FM+ R  G  +S L  + S+  + T G N+G+
Sbjct: 1   MMKLFTKDKDGHFIREINGIKLPFPLTEFMKVRKLGYILSALLMVISLFFIITKGFNWGL 60

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           DF GG+      ++  +L  +RS L    I     Q     ++ ++RL     DS     
Sbjct: 61  DFTGGVVFDTHFSQSANLEQIRSKLHENGIESPIVQTTGSVQDVMIRLPASNNDST---- 116

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E VK  +  +     I++ E VGP +  EL +  +   + +   +LIY+  RF+W   
Sbjct: 117 IGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLG 176

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            G+I +L  D+  TLG F+   IE +LT VAA+L+++GYS+ND +VV+DR+R+N +    
Sbjct: 177 FGSIASLAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-R 235

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            +   D+ID S+ +TL R++ TS+   + V+ +  +GG  I +F++ +  GI     SSI
Sbjct: 236 RLDTIDIIDISLTQTLSRTIITSVTTLVVVMALFFFGGPSIHNFSLALLVGIGFGTYSSI 295

Query: 814 FIAAPILLFIYDWRA 828
           F+A  I   +   R 
Sbjct: 296 FVAIAIAYDVGLRRE 310


>gi|260913706|ref|ZP_05920182.1| protein-export membrane protein SecF [Pasteurella dagmatis ATCC
           43325]
 gi|260632245|gb|EEX50420.1| protein-export membrane protein SecF [Pasteurella dagmatis ATCC
           43325]
          Length = 339

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 105/308 (34%), Positives = 171/308 (55%), Gaps = 4/308 (1%)

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           K  +        +      I+FM+ R WG  +S+   + S+  +++ G N+G+DF GG  
Sbjct: 20  KKNESATNENVEVKLPYRLIRFMKGRVWGYAVSVFAILLSLFFVYSKGFNWGLDFTGGTV 79

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +  ++P +L  VRS LE+  I     QN    ++ ++RL     D+     V +M+  
Sbjct: 80  IDMSFSQPAELDKVRSTLENNGIQSAIVQNSGSVRDIIIRLPAAVSDANLGNNVKQMMAN 139

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            I    P  T+ + E VGP +  EL +  I   + + + +L YI +RF+W  A+GAI +L
Sbjct: 140 NI---DPNVTVHSIEFVGPNVGEELTQSAIYATLATLLMLLAYIGLRFEWRLAVGAIASL 196

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             D+  TLG F+LF IE +LT VAA+LT++GYS+ND +VV+DR+R+NM+    +    D+
Sbjct: 197 AHDVIVTLGLFSLFQIEIDLTFVAAILTVVGYSLNDSIVVFDRVRENMRKIRRTE-VIDI 255

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ID S+++TL R++ TS    I V+ + V+GG  I SF++ +  GI     SSIF+A  + 
Sbjct: 256 IDISLSQTLSRTLMTSATTVIVVVSLLVFGGPSIHSFSVALLIGIGFGTYSSIFVAIALA 315

Query: 821 LFIYDWRA 828
             +   R 
Sbjct: 316 YDLGLKRE 323


>gi|85058627|ref|YP_454329.1| preprotein translocase subunit SecF [Sodalis glossinidius str.
           'morsitans']
 gi|84779147|dbj|BAE73924.1| protein-export membrane protein SecF [Sodalis glossinidius str.
           'morsitans']
          Length = 323

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 87/296 (29%), Positives = 160/296 (54%), Gaps = 2/296 (0%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L        FMR  +    +S +  I SI ++   G N+G+DF GG  + +   +P DL 
Sbjct: 11  LNYGRRVYDFMRWDYVAFSLSAILLIASIAIMAVKGFNWGLDFTGGTVIELNLEKPADLD 70

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +R  LE     D   QNF   ++ +VR+     D + Q    +++          ++++
Sbjct: 71  QMRGALEHAGFTDPLVQNFGSSRDVMVRMP-PVQDGLGQELGNKVLGVINQATGQNASVK 129

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E VGP +  +L + G + ++++ I +LIY+  RF+W  A GA+  L  D+  TL   +
Sbjct: 130 RVEFVGPSVGSDLAQDGGMALLVALICILIYVGFRFEWRLATGAVLALAHDVVITLCVLS 189

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LF IE +LT +A+++++IGYS+ND +VV DR+R+N +      ++ D+ + S+ +TL R+
Sbjct: 190 LFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGSAY-DIFNVSLTQTLSRT 248

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + TS    + VL + ++GG+++  F+  +  G+ +   SSI++A+ + L +   R 
Sbjct: 249 IMTSATTLMVVLMLLIFGGAMLRGFSTTLFIGVFIGTVSSIYVASALALKLGMKRE 304


>gi|221069818|ref|ZP_03545923.1| protein-export membrane protein SecD [Comamonas testosteroni KF-1]
 gi|220714841|gb|EED70209.1| protein-export membrane protein SecD [Comamonas testosteroni KF-1]
          Length = 632

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 170/507 (33%), Positives = 272/507 (53%), Gaps = 22/507 (4%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++ R P  +       + LGLDLRGG H +L+VD    +    + Y+ +LRS ++ + I
Sbjct: 109 NLVSRSPDWLTAIGAKPMYLGLDLRGGVHFMLQVDMAAALTKKAESYAGDLRSTMRDKNI 168

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +  N +T+   D        + +             D         T   +   
Sbjct: 169 RHGGVSRDGNNVTIRVRDEATLTAARNLIADQF--------PDLAATSSPDGTGFRLVAS 220

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    + +V   A++Q++  +  RI+++G++E  IQ+ G  RI++QLPG QD ++ + +L
Sbjct: 221 IKPEALRKVQEQALKQNIVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDIL 280

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGIHLNGATA 259
           G TA +    V  +   +    G   +        D +G   +V+ +V ++G +L  A  
Sbjct: 281 GRTATLEVRMVDESAEARAAEMGSGPVPFGSEKYLDRNGQSIIVQKQVTLTGENLTDAQP 340

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSG 315
            FD +T +P V+++ D  GAR F +VTR+N+GK +         G V+TAPVI   I  G
Sbjct: 341 GFDSQTQEPTVNLTLDAKGARIFKDVTRENVGKRMAIILFEKGKGEVVTAPVIRGEIGGG 400

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           + QISG  T   A   + +LRAGSL   + I+EE  +G  LG+D+I +G  ++V G+V I
Sbjct: 401 RVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHSVVWGMVAI 460

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
             FM + Y  +G+ +  ++ +NV+L LA+LS+L ATLTLP IA + L +G+A+DSN+L+N
Sbjct: 461 AAFMCMYYMLFGVFSTIALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERIREE R   S   ++  G+  A+ TI DSN+T LIA + L  FG G VRGFA+   + 
Sbjct: 521 ERIREELRAGASPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGVVRGFAVVHCIG 580

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKS 522
           IL SMF+A+   R ++      KK   
Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGGKKKLK 607



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 86/212 (40%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I +GI  V+   +A+ 
Sbjct: 402 VQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHSVVWGMVAIA 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + +   F + +   L +++   L   ++      L  +AA+   +G +++  V++ 
Sbjct: 462 AFMCMYY-MLFGVFSTIALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      S +  I           + +++   I+ L +  +G  V+  FA+  
Sbjct: 521 ERIREELRA---GASPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGVVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++F +  ++   Y  + K   +
Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGGKKKLKSV 609



 Score = 46.6 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   +G+L  LPNF  ++                           ++V 
Sbjct: 3   RYPVWKYAIIVIALLVGVLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         ++ S L    +   S+      +   F     +    D +   L
Sbjct: 38  SAKSTVKVDNAVLQKVESALSAASVKATSLSLEGTSVRARFDTPDEQLKAKDVIQKAL 95


>gi|160896287|ref|YP_001561869.1| preprotein translocase subunit SecD [Delftia acidovorans SPH-1]
 gi|160361871|gb|ABX33484.1| protein-export membrane protein SecD [Delftia acidovorans SPH-1]
          Length = 640

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 172/515 (33%), Positives = 276/515 (53%), Gaps = 21/515 (4%)

Query: 19  LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78
             I   N + +S   ++ +A+    + LGLDLRGG H +L+VD    +      ++ +LR
Sbjct: 103 AYIVALNLVSRSP--QWLTAVGAKPMYLGLDLRGGVHFMLQVDMAAALTKKADSFAGDLR 160

Query: 79  SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT 138
           + L+ + I    + +  N + +   D        + VT            D         
Sbjct: 161 TSLRDKNIRHGGVSRNGNTVEIRVRDEAMLTAARNLVTDQF--------PDLAATSEPDG 212

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
              ++   +    + +V   A++Q++  +  RI+++G++E  IQ+ G  RI++QLPG QD
Sbjct: 213 AGFKLLASIKPEALRKVQEQALKQNIVTLHNRINELGVAEPVIQQQGLDRIIVQLPGVQD 272

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISG 251
            ++ + +LG TA +    V  ++  +G   G   +        D +    +V+ +V ++G
Sbjct: 273 TAKAKDILGRTATLEVRLVDESSEARGAELGSGPVPFGSERYLDRNAQAVIVQKQVVLTG 332

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPV 307
            +L  A   FD +T +P V++  D  GAR F ++TR+N+GK +         G V+TAPV
Sbjct: 333 ENLTDAQPGFDSQTQEPTVNLVLDAKGARIFKDITRENVGKRMAIILFEKGKGEVVTAPV 392

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           I   I  G+ QISG  T   A   A +LRAGSL   + I+EE  +G  LG+D+I +G  +
Sbjct: 393 IRTEIGGGRVQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHS 452

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           +V GLV I  FM V Y  +G+++  ++ +NV+L LA+LS+L ATLTLP IA + L +G+A
Sbjct: 453 VVWGLVAIAAFMCVYYMLFGVISTVALSVNVLLLLAILSMLQATLTLPGIAAMALALGVA 512

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           +DSN+L+NERIREE R   S   ++  G+  A+ TI DSN+T LIA + L  FG G VRG
Sbjct: 513 IDSNVLINERIREELRGGVSPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGPVRG 572

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           FA+   + IL SMF+A+   R ++      +K   
Sbjct: 573 FAVVHCIGILTSMFSAVFFSRGLVNLWYGRRKKLK 607



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 86/212 (40%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I +GI  V+   +A+ 
Sbjct: 402 VQISGRMTTAEANDTALLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHSVVWGLVAIA 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + +   F + +   L +++   L   ++      L  +AA+   +G +++  V++ 
Sbjct: 462 AFMCVYY-MLFGVISTVALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +S +  I           + +++   I+ L +  +G   +  FA+  
Sbjct: 521 ERIREELRG---GVSPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGPVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++F +  ++   Y  R K   I
Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGRRKKLKSI 609



 Score = 46.6 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 28/118 (23%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   +G+L  LPNF  ++                           ++V 
Sbjct: 3   RYPVWKYAIIVIALLVGVLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                          +   LK   +    +      +   F     +    D +   L
Sbjct: 38  SAKATVKVDNAVLHRVEEALKAADVKPDVLTIEGTSVRARFNTPDEQLKAKDVIQKAL 95


>gi|113869070|ref|YP_727559.1| preprotein translocase subunit SecF [Ralstonia eutropha H16]
 gi|113527846|emb|CAJ94191.1| preprotein translocase subunit SecF [Ralstonia eutropha H16]
          Length = 323

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 157/305 (51%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS L    ++  L+  GL+  I+F GG  + V   +  D
Sbjct: 1   MEFFRIRRDIPFMKHALVFNVISFLTFAAAVFFLWHKGLHLSIEFTGGTVMEVSYQQTAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  +R  +  L   D+  QNF   ++ ++RL  Q G         +  E V   +    P
Sbjct: 61  LEKIRGQVGKLGYTDVQVQNFGTSRDVMIRLPLQKGADGKPVTSAQQSEQVMASLQAASP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G++ ++     ++IY+  RF+W FA+  I   + D+   
Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLCVVAGIVIYLSFRFEWKFAVAGIIANLHDVVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AA+L ++GYSVN+ VV++DR+R+N + +   +S  ++ID +I  
Sbjct: 181 LGFFAYFQWEFSLSVLAAILAVLGYSVNESVVIFDRIRENFRKFRK-MSTHEIIDNAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTIITHGSTQMMVLSMFFFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|157825967|ref|YP_001493687.1| preprotein translocase subunit SecD [Rickettsia akari str.
           Hartford]
 gi|157799925|gb|ABV75179.1| preprotein translocase subunit SecD [Rickettsia akari str.
           Hartford]
          Length = 518

 Score =  220 bits (560), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 195/532 (36%), Positives = 316/532 (59%), Gaps = 26/532 (4%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N   W + L  +     ++ ALPNF+  +        +P + ++LGLDLRGG+HL+L+
Sbjct: 1   MQNLPKWKIFLSIICTVFAVICALPNFMHINS-----KFLPHDSVNLGLDLRGGAHLLLD 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           VD D ++N  ++  +D LR   +K+ IG  ++   QN I L        + +   +    
Sbjct: 56  VDFDTYLNDLMENLADTLRKNFRKDKIGYKNLLVRQNNIQLEVRSPEELKPLKKIINK-- 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         ++    + +I +  S++ ++ +++  ++QS+EI+R R+D  G  E 
Sbjct: 114 ----------IDPEIITDVNKNKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233
           T+Q+ G   IL+Q+PGE++PS L+ LLG TAK++FH V  N + +  + G   +      
Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNLLGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223

Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
              +S G  Y+V  K  + G       +    +  + VV  SF+ +G++ F E+T++NIG
Sbjct: 224 GANESHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNIG 283

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K LA+VLD ++L+AP IN AI  G   I+GNFT+E+A  LA +LRAGSLP  L I+EER+
Sbjct: 284 KRLAIVLDNKLLSAPTINGAIIGGSGIITGNFTVESANELAILLRAGSLPAPLKIIEERS 343

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +G +LG+DSI  G  A + G + + +FM+  YG  GL A+ ++ L ++  LALLSL  AT
Sbjct: 344 IGPNLGADSIESGKKAWLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LT+P IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI DSN+T L
Sbjct: 404 LTMPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFEFAFATILDSNLTTL 463

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           I   +L+ FG GA++GFA+ + + I+ SMF+A+ I + ++   ++Y K K +
Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSMFSAMIITKLLIDIWVKYFKPKKL 515



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 78/178 (43%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  IA+ I++   +     L A   L L +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAWLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G +V+  V++Y+R+++ +      +S    I           + +
Sbjct: 402 ATLTMPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFEFAFATILDS 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S++ I   +L+ I+    K  ++
Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVALTIGIISSMFSAMIITK-LLIDIWVKYFKPKKL 515


>gi|83746738|ref|ZP_00943786.1| Protein translocase subunit secD [Ralstonia solanacearum UW551]
 gi|207744283|ref|YP_002260675.1| protein-export membrane protein secd [Ralstonia solanacearum
           IPO1609]
 gi|83726507|gb|EAP73637.1| Protein translocase subunit secD [Ralstonia solanacearum UW551]
 gi|206595688|emb|CAQ62615.1| protein-export membrane protein secd [Ralstonia solanacearum
           IPO1609]
          Length = 627

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 169/515 (32%), Positives = 274/515 (53%), Gaps = 26/515 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL   P +L                + LGLDLRGG H +L+VD +  +   L   
Sbjct: 109 IVALNLLSGSPRWLTAIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+ +G+    + +    I++ F++    +     +    +        +    
Sbjct: 160 AGDIRTQLRDKGVRHNGIERSGTTISIKFSNPDEADRARGLLADSTR--------ELAFA 211

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
              T     ++   +   + +V  +A++Q++  +  R++++G+SE  IQ+ G  RI++QL
Sbjct: 212 TDKTADGVTLTGTFTAAAMKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +      PN +           G        G   L++ +V 
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARMADPNATGIPRLTDPVPLGDELFTQGRGAPVLLQKQVI 331

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +N A+A FD   H P VDI+ D  G R   +++RDNIGK +A+VL  +    +  
Sbjct: 332 FTGDRINSASAGFDQN-HNPSVDITLDGQGGRMLRDISRDNIGKRMAIVLFEKGKGEVLT 390

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  ++E+A  LA +LRAGSL   + I+EER +G  LG+D+I KG 
Sbjct: 391 VATIQSELGSRFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 450

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            +   G   I +FM++ Y  +G  +  S+ +NV L +A+LS+L ATLTLP IA I L +G
Sbjct: 451 DSAAYGFAAISVFMVLYYMLFGAFSVVSLGVNVFLLIAILSMLQATLTLPGIAAIALALG 510

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NERIREE R   S   ++  GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 511 MAIDANVLINERIREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFA+   L IL SMF+A+   R+++      KK 
Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605



 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG         A+ +++ + +   F   ++ +L +++   +
Sbjct: 429 MEIIEERTIGPSLGADNIKKGFDSAAYGFAAISVFMVLYY-MLFGAFSVVSLGVNVFLLI 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++      S +  I       
Sbjct: 488 AILSMLQATLTLPGIAAIALALGMAIDANVLINERIREELR---NGASPQMAIAAGFERA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FA+    GI+ +  S++F    ++   Y  + 
Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604

Query: 829 K 829
           K
Sbjct: 605 K 605



 Score = 37.7 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34
          R   W  ++  +   IG L  LPNF  ++   +
Sbjct: 3  RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQ 35


>gi|319409996|emb|CBY90325.1| preprotein translocase SecD subunit [Neisseria meningitidis WUE
           2594]
          Length = 617

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596


>gi|152996658|ref|YP_001341493.1| preprotein translocase subunit SecD [Marinomonas sp. MWYL1]
 gi|150837582|gb|ABR71558.1| protein-export membrane protein SecD [Marinomonas sp. MWYL1]
          Length = 616

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 165/538 (30%), Positives = 283/538 (52%), Gaps = 38/538 (7%)

Query: 14  ICCIGL---LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
           +    L    +   N +P +    + SA+      LGLDLRGG H +LEVD    +   L
Sbjct: 91  VVAAALGDDYVTALNLVPTTP--EWLSALGAGPAKLGLDLRGGVHFLLEVDTPAALKQRL 148

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
           ++ + E+++ L+K+ +   S+      +++ F            +             D 
Sbjct: 149 EVSASEMKAALRKDRVRYRSVDIEDGVLSVRFLQQPDLATAETLLKKDFSEYRYATRQDG 208

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
                       + +  ++    ++ S+A++Q++  +R R++++G++E  +QR GS+RI+
Sbjct: 209 SDFY--------LDVSFTEAAKKEIESYALQQNLTTLRNRVNELGVAEPLVQRQGSNRIV 260

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           ++LPG QD +  ++++G TA + FH        KG        RD  G    +E  + I+
Sbjct: 261 VELPGVQDTAAAKRIIGATANLEFHLEA-GLEDKGADIETLSFRDGSGRTARLERDLIIT 319

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI-- 308
           G  ++ A+++FD    +P V+I+ D  G ++  +VTR  +G+ +AVV       +  +  
Sbjct: 320 GDSVSDASSSFDENG-RPQVNINLDAKGGKQMSKVTRSAVGRNMAVVFIEHKSRSRFVEK 378

Query: 309 ---------------------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                                 Q       +I+G  +   +  LA +LRAG+L   +  V
Sbjct: 379 DGKMEEVRRSYSEKGIISLATIQTTLGNSFRITGLDSPRESSELALLLRAGALAAPIYFV 438

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER +G  LG+++I  G  +   GL+++++FM++ Y  +GL A+ S+ LN++L +A +SL
Sbjct: 439 EERTIGPSLGAENIKLGVSSAQIGLLVVMVFMLLYYKVFGLFANISLALNIVLLMACMSL 498

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           L ATLTLP IAGIVL +G+AVD+N+L+  RI+EE     S   ++  GF+RA++TIFD+N
Sbjct: 499 LSATLTLPGIAGIVLTMGMAVDANVLIFSRIKEELASGVSNQQAIHSGFNRAFTTIFDAN 558

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           IT L+  V+LF  G G V+GFA+T+ L IL SMFTAI + RA +  +   +K K + I
Sbjct: 559 ITTLLVAVILFAVGTGPVKGFAVTLSLGILTSMFTAIVVTRAQVNLVYGGRKNKKLYI 616



 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 99/248 (39%), Gaps = 10/248 (4%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +   +  VR +     I  ++        +F +     P +S     +L          
Sbjct: 377 EKDGKMEEVRRSYSEKGIISLATIQTTLGNSFRITGLDSPRESSELALLLRAGALAAP-- 434

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                      +GP +  E I+ G+    I  + +++++ + +K  F L A  +L L+I 
Sbjct: 435 ---IYFVEERTIGPSLGAENIKLGVSSAQIGLLVVMVFMLLYYKV-FGLFANISLALNIV 490

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +   +L      L  +A ++  +G +V+  V+++ R+++ +    + +S +  I    
Sbjct: 491 LLMACMSLLSATLTLPGIAGIVLTMGMAVDANVLIFSRIKEELA---SGVSNQQAIHSGF 547

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           N         ++   +  + +   G   +  FA+ ++ GI+ +  ++I +    +  +Y 
Sbjct: 548 NRAFTTIFDANITTLLVAVILFAVGTGPVKGFAVTLSLGILTSMFTAIVVTRAQVNLVYG 607

Query: 826 WRAKNARI 833
            R KN ++
Sbjct: 608 GR-KNKKL 614


>gi|254674008|emb|CBA09792.1| protein-export membrane protein SecD [Neisseria meningitidis
           alpha275]
 gi|325202598|gb|ADY98052.1| protein-export membrane protein SecD [Neisseria meningitidis
           M01-240149]
          Length = 617

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + L+  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|238755136|ref|ZP_04616483.1| Protein-export membrane protein secF [Yersinia ruckeri ATCC 29473]
 gi|238706696|gb|EEP99066.1| Protein-export membrane protein secF [Yersinia ruckeri ATCC 29473]
          Length = 322

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 163/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR      GIS+L  + SI ++   G N+G+DF GG  + +    
Sbjct: 5   YTVEQLNYGRKVYDFMRWDNVAFGISLLLLVASIAIISVKGFNWGLDFTGGTVIEINLEN 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  LE         QNF   ++ +VR+    G +  Q     ++      +  
Sbjct: 65  PADLDQMRDTLEKAGFESPILQNFGSTRDVMVRMPPATG-AAGQELGNRVISVINESVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++++ + +L+Y+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGGMALLVALLCILVYVGFRFEWRLALGAVIALAHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF +E +LT +A+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGILSLFQVEVDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|116748679|ref|YP_845366.1| protein-export membrane protein SecD [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697743|gb|ABK16931.1| protein-export membrane protein SecD [Syntrophobacter fumaroxidans
           MPOB]
          Length = 533

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 193/540 (35%), Positives = 303/540 (56%), Gaps = 22/540 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N  W  +L  ++  +G++  +P F+       +   +PK++I LGLDL+GG HL+LEV
Sbjct: 1   MSNLKWRALLVVVVLIVGVVYLVPTFVSTLP-PGWSKFLPKDKIRLGLDLQGGMHLILEV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
           + D  V+      +++L+   +KE I    + +     I +    +  +  I   V    
Sbjct: 60  EADQAVSNTATRLAEDLKDAFRKEKIAFNKIDKTGKWDIEVQLPGTEQQSQIGPLVEKEF 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +         +  +      ++ + + +  +++V   AI Q +E IR RIDQ G+SE 
Sbjct: 120 PTLKWVSAETQPEGTV------KVMLTVHEKEVERVQKAAIAQGLETIRNRIDQFGVSEP 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF------- 232
            I+  G  RIL+QLPG QDP R  +L+G TA++ F  V    S +    G          
Sbjct: 174 DIRPQGEDRILVQLPGIQDPQRAVELIGKTAQLEFKLVAEGVSPQDVKSGKAPAGTKIYP 233

Query: 233 -------LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                   R    +Q ++ D+  +SG ++  A    D +     V + FD  GA+ F ++
Sbjct: 234 MKHTDRTTRQRTESQIVLNDRTLMSGEYITNAQVEIDRQHSSSYVALDFDAQGAKLFEKI 293

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+ K LA+VLDG V +APVI + I  GKA I+G+FT + A  LA +LRAG+LP  + 
Sbjct: 294 TEANVKKQLAIVLDGVVYSAPVIQETIGGGKATITGSFTDQEARDLAIVLRAGALPAPVK 353

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           I+E+R VG  LG+DSI KG  A + G +  +LFM++ Y   G+VAD ++ LNV+L LA +
Sbjct: 354 ILEQRTVGPSLGADSINKGVLASIVGGIGTILFMLIYYRFGGVVADLALALNVLLVLAGM 413

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           +  G TLTLP IAGI L IG+AVD+N+L+ ERIREE R  ++   +L+ G+ RA  TI D
Sbjct: 414 AAFGFTLTLPGIAGIALTIGMAVDANVLIYERIREELRLGKTPRAALETGYDRATLTILD 473

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +N+T +IA +VL  FG G VRGFA+T+ + +  +MFTAI + R +  +++  +++K++ I
Sbjct: 474 ANVTTIIAALVLLQFGTGPVRGFAVTLTVGLAANMFTAIFVTRVIFDYLLVQRRIKTLSI 533



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VGP +  + I KG++  I+  I  ++++ I +++   +  +   +  +    G  A 
Sbjct: 357 QRTVGPSLGADSINKGVLASIVGGIGTILFMLIYYRFGGVVADLALALNVLLVLAG-MAA 415

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A +   IG +V+  V++Y+R+R+ ++L     + R  ++   +      +
Sbjct: 416 FGFTLTLPGIAGIALTIGMAVDANVLIYERIREELRL---GKTPRAALETGYDRATLTIL 472

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAK 829
             ++   I+ L +  +G   +  FA+ +  G+     ++IF+   I    +   R K
Sbjct: 473 DANVTTIIAALVLLQFGTGPVRGFAVTLTVGLAANMFTAIFVTRVIFDYLLVQRRIK 529


>gi|56312248|emb|CAI06893.1| protein-export membrane protein SecD [Aromatoleum aromaticum EbN1]
          Length = 635

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 184/517 (35%), Positives = 284/517 (54%), Gaps = 26/517 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL A P +L                + LGLDLRGG H +LEVD    +   L   
Sbjct: 119 IVALNLLSASPTWLTAIHA---------LPMYLGLDLRGGVHFLLEVDMPGAITKRLDAT 169

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + +LR+ L+ + +    + +  N + L F D+  +E   + +    + +      D    
Sbjct: 170 AGDLRTLLRDKDVRHAGIVREGNTVQLRFRDAAQREAARNAILNSTRDLQLVDRDDG--- 226

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
               +T+ ++   L+      +   AI+Q++  +  RI+++G++E  IQ+ G++RI++QL
Sbjct: 227 ----STDLKLIATLTPVAQQTIRDFAIKQNITTLHNRINELGVAEPVIQQQGANRIVVQL 282

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKV 247
           PG QD ++ + +LG TA +    V  +             FG     +  G+  LV  +V
Sbjct: 283 PGVQDVAKAKDILGRTATLEVRMVDDSPGALEAALAGNVPFGTELYTERGGSPLLVRSQV 342

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVL 303
            ++G  L  A   FD +T++P V ++ D  G+R F +VTR+N+GK +         G V+
Sbjct: 343 VLTGDRLTDAQPGFDGQTNEPAVHLTLDAAGSRIFRDVTRENVGKRMAILLIEKGKGEVV 402

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           TAPVI   I  G+ QISG+ T   A  +A +LRAGSL   + I+EER VG  LG+D+I K
Sbjct: 403 TAPVIRSEIGGGRVQISGSMTTTEANDVALLLRAGSLAAPMEIIEERTVGPSLGADNIAK 462

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  + + G + I +FMI  Y  +GL++  ++  N++L +ALLSLL ATLTLP IA + L 
Sbjct: 463 GFNSTLWGFIAIAVFMIAYYMLFGLISAIALAANLLLLVALLSLLQATLTLPGIAAMALT 522

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+A+D+N+L+NERIREE R   S   ++  G+ RA+ TI DSNIT LIA + L  FG G
Sbjct: 523 LGMAIDANVLINERIREELRNGVSPQAAIHTGYDRAFDTILDSNITTLIAGIALLVFGSG 582

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            VRGFA+   L IL SMF+AI I R ++  I   ++ 
Sbjct: 583 PVRGFAVVHCLGILTSMFSAILISRMLVNLIYGRRRK 619



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 85/208 (40%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     VGP +  + I KG    +   IA+ 
Sbjct: 416 VQISGSMTTTEANDVALLLRAGSLAAPMEIIEERTVGPSLGADNIAKGFNSTLWGFIAIA 475

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++   +   F L +   L  ++   +   +L      L  +AA+   +G +++  V++ 
Sbjct: 476 VFMIAYY-MLFGLISAIALAANLLLLVALLSLLQATLTLPGIAAMALTLGMAIDANVLIN 534

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +S +  I    +      + +++   I+ + + V+G   +  FA+  
Sbjct: 535 ERIREELR---NGVSPQAAIHTGYDRAFDTILDSNITTLIAGIALLVFGSGPVRGFAVVH 591

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  S+I I+  ++  IY  R K
Sbjct: 592 CLGILTSMFSAILISRMLVNLIYGRRRK 619



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 25/120 (20%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  IL  ++   GL+  LPNF  +                            ++V 
Sbjct: 17  RYPLWKNILIGLVLFFGLIYTLPNFYGEVPA-------------------------VQVS 51

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                          +   L+   +    +    N I +    +  +    D +   L  
Sbjct: 52  SGKATLKLDPALVAPIEQTLRDAEVPYDGLFVDGNSIRVRLGSTEDQLRAKDSIEKRLNP 111


>gi|319957740|ref|YP_004169003.1| protein translocase subunit secf [Nitratifractor salsuginis DSM
           16511]
 gi|319420144|gb|ADV47254.1| protein translocase subunit secF [Nitratifractor salsuginis DSM
           16511]
          Length = 323

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 95/294 (32%), Positives = 164/294 (55%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM A      +S++  + S  L+FT G NYGIDF GG  + +       
Sbjct: 1   MELFRYKKPIDFMGASRKFGIVSLILVLLSWGLIFTKGFNYGIDFAGGTLIQLKYEGEAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  +   +    +   + G KN  V ++ +         V + V++ + +      
Sbjct: 61  LKKIREAMAKSEAFKDATVTYFGSKN-EVVIRTKTSSKSVGKDVGDEVRQMLKDTGKF-V 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  ++VGPKI  EL  KG++ ++++ + +LIY+ +RF+W FAL ++  L+ D++  +G 
Sbjct: 119 VRRVDMVGPKIGNELKEKGLMAMVLAILGILIYVSVRFEWRFALASVLALVHDVSIAMGA 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF +E NL  +AA+LTL+GYS+ND ++V+DR+R+ ++          +I++SI  TL 
Sbjct: 179 IILFNVEVNLDILAALLTLLGYSLNDTIIVFDRIREGLQKI-KDPDLAGIINESITRTLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R+V TS+  F  VL + ++GG +I  F+  M  GI+V   SSIFIA+P+L+++ 
Sbjct: 238 RTVLTSLTTFFVVLSLFLFGGEIIYGFSFTMLVGIIVGTYSSIFIASPLLMWLG 291


>gi|254804490|ref|YP_003082711.1| protein-export membrane protein SecD [Neisseria meningitidis
           alpha14]
 gi|254668032|emb|CBA04434.1| protein-export membrane protein SecD [Neisseria meningitidis
           alpha14]
          Length = 617

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596


>gi|325131940|gb|EGC54640.1| protein-export membrane protein SecD [Neisseria meningitidis M6190]
 gi|325137611|gb|EGC60188.1| protein-export membrane protein SecD [Neisseria meningitidis
           ES14902]
          Length = 617

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ +++    +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRV---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + L+  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|317492967|ref|ZP_07951391.1| protein-export membrane protein SecF [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919089|gb|EFV40424.1| protein-export membrane protein SecF [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 323

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 164/297 (55%), Gaps = 1/297 (0%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L        FMR  +W  GIS    + SI ++  +  N G+DF GG  + V   +P D+
Sbjct: 9   QLNYGRRVYDFMRWDYWAFGISGFLLLLSIIIIGVNKFNLGLDFTGGTVIEVSLEKPADM 68

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            ++R  L+     D   QNF   ++ +VR+     ++  +    +++          +T+
Sbjct: 69  DMMRDALKKAGFVDPLLQNFGSSRDIVVRMPPATSEASGEALGSKVISVINEATSQNATV 128

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  E VGP +  +L + G + ++++ IA+LIY+ +RF+W  A G + +L+ D+  TLG  
Sbjct: 129 KRIEFVGPSVGEDLAQHGAMALLVALIAILIYVGVRFEWRLAAGVVISLLHDVIITLGVL 188

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +TL R
Sbjct: 189 SLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHR 247

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++ TS    + +L + ++GG ++  F++ M  G+ +   SSI++A+ + L +   R 
Sbjct: 248 TLITSGTTLMVILMLYLFGGPMLKGFSLTMLIGVSIGTISSIYVASALALKLGMKRE 304


>gi|238765179|ref|ZP_04626111.1| Protein-export membrane protein secF [Yersinia kristensenii ATCC
           33638]
 gi|238696613|gb|EEP89398.1| Protein-export membrane protein secF [Yersinia kristensenii ATCC
           33638]
          Length = 322

 Score =  220 bits (560), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 166/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR      GIS+L  + SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDNVAFGISLLLLVASIAVISVKGFNWGLDFTGGTVIEINLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  LE+        QNF   ++ ++R+    G    Q    +++      +  
Sbjct: 65  PADLDQLRDTLETAGFESPILQNFGSSRDVMIRMPPATGT-AGQELGNKVISIINESVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + ++++ +++L+Y+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALLSILVYVGFRFEWRLALGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|264680870|ref|YP_003280780.1| protein-export membrane protein SecD [Comamonas testosteroni CNB-2]
 gi|262211386|gb|ACY35484.1| protein-export membrane protein SecD [Comamonas testosteroni CNB-2]
          Length = 632

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 170/507 (33%), Positives = 274/507 (54%), Gaps = 22/507 (4%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++ R P  +       + LGLDLRGG H +L+VD    +    + Y+ +LRS ++ + I
Sbjct: 109 NLVSRSPDWLTAIGAKPMYLGLDLRGGVHFMLQVDMAAALTKKAESYAGDLRSSMRDKNI 168

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +  N +T+   D        + +             D     +   T  ++   
Sbjct: 169 RHGGVSRDGNNVTIRVRDEATLTAARNLIADQF--------PDLAATSMPDGTGFKLVAS 220

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    + +V   A++Q++  +  RI+++G++E  IQ+ G  RI++QLPG QD ++ + +L
Sbjct: 221 IKPEALRKVQEQALKQNIVTLHNRINELGVAEPVIQQQGLDRIVVQLPGVQDTAKAKDIL 280

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGIHLNGATA 259
           G TA +    V  +   +    G   +        D +G   +V+ +V ++G +L  A  
Sbjct: 281 GRTATLEVRMVDESAEARAAEMGSGPVPFGSEKYLDRNGQGIIVQKQVTLTGENLTDAQP 340

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIPSG 315
            FD +T +P V+++ D  GAR F +VTR+N+GK +         G V+TAPVI   I  G
Sbjct: 341 GFDSQTQEPTVNLTLDAKGARIFKDVTRENVGKRMAIILFEKGKGEVVTAPVIRGEIGGG 400

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           + QISG  T   A   + +LRAGSL   + I+EE  +G  LG+D+I +G  ++V G+V I
Sbjct: 401 RVQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHSVVWGMVAI 460

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
             FM + Y  +G+ +  ++ +NV+L LA+LS+L ATLTLP IA + L +G+A+DSN+L+N
Sbjct: 461 AAFMCMYYMLFGVFSTIALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERIREE R   S   ++  G+  A+ TI DSN+T LIA + L  FG G VRGFA+   + 
Sbjct: 521 ERIREELRAGASPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGVVRGFAVVHCIG 580

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKS 522
           IL SMF+A+   R ++      KK   
Sbjct: 581 ILTSMFSAVFFSRGLVNLWYGGKKKLK 607



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 86/212 (40%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I +GI  V+   +A+ 
Sbjct: 402 VQISGRMTTAEANDTSLLLRAGSLAAPMEIIEEYTIGPSLGADNINRGIHSVVWGMVAIA 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + +   F + +   L +++   L   ++      L  +AA+   +G +++  V++ 
Sbjct: 462 AFMCMYY-MLFGVFSTIALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      S +  I           + +++   I+ L +  +G  V+  FA+  
Sbjct: 521 ERIREELRA---GASPQAAIHAGYENAWHTILDSNVTTLIAGLALLAFGSGVVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++F +  ++   Y  + K   +
Sbjct: 578 CIGILTSMFSAVFFSRGLVNLWYGGKKKLKSV 609



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 30/118 (25%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   +G+L  LPNF  ++                           ++V 
Sbjct: 3   RYPVWKYAIIVIALLVGVLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         ++ S L    +   SM      +   F     +    D +   L
Sbjct: 38  SAKSTVKVDNAVLQKVESALSAASVKATSMSLEGTSVRARFDTPDEQLKAKDVIQKAL 95


>gi|226954463|ref|ZP_03824927.1| preprotein translocase subunit SecD [Acinetobacter sp. ATCC 27244]
 gi|294651479|ref|ZP_06728792.1| preprotein translocase subunit SecD [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226834812|gb|EEH67195.1| preprotein translocase subunit SecD [Acinetobacter sp. ATCC 27244]
 gi|292822629|gb|EFF81519.1| preprotein translocase subunit SecD [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 633

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 159/542 (29%), Positives = 276/542 (50%), Gaps = 49/542 (9%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            +   N  P + +  +   +    + LGLDLRGG H +LEVD D  ++  ++  + +LR 
Sbjct: 98  YVIALNLAPTTPI--WLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRR 155

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
             +   I   ++    N IT+ FA +  ++  AD +                +  + T T
Sbjct: 156 QFRDNKIKFNNLALNNNTITIQFASNADRDAAADFLRRNGNEF--------NQQSIATAT 207

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              + +  +     ++ S+A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD 
Sbjct: 208 GATLRLNYTDARRQEIQSYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGIQDT 267

Query: 200 SRLRQLLGTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVED 245
           +  +++LG TA + F  V  +N                        F     G   L+  
Sbjct: 268 AEAKRVLGRTANLEFRLVADSNDQYIDPYTRKYNGQPVPPGTEVFAFESLDSGRDLLLNR 327

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----------- 294
              ++G  +  A++ F   T    V+I+ D  G +   + TR+ +GK +           
Sbjct: 328 NRILTGERVQNASSGFSQDTGGAEVNITLDSAGGKLMADGTRNAVGKRMAVLFIENKQRI 387

Query: 295 --------------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
                                V+      QA+   + +I+G  + + A  LA MLRAG+L
Sbjct: 388 SYVTDPETGAQTEVRTPYTESVVINAATIQAVLGSQFRITGLDSPQEAAELALMLRAGAL 447

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
              +  VEER VG  LG ++I KG  + + G +L+ ++M+V +  +GL+A+F++  N+ +
Sbjct: 448 AAPMYFVEERVVGPSLGKENIEKGVQSTIIGFILVAIWMVVFFRLFGLIANFALIFNLAM 507

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
            L ++S LGA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE R   S   ++  G+ RAY
Sbjct: 508 ILTVMSWLGASLTLPGIAGIVITIGMAVDANVLICERIREEMRWGASPKQAIVAGYDRAY 567

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSN+T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   ++ 
Sbjct: 568 NTIVDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLIYGKRRN 627

Query: 521 KS 522
            +
Sbjct: 628 LT 629



 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 94/250 (37%), Gaps = 4/250 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   D              +    N    +  L       G    Q      +  +  
Sbjct: 386 RISYVTDPETGAQTEVRTPYTESVVINAATIQAVLGSQFRITGLDSPQEAAELALMLRAG 445

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +          +VGP + +E I KG+   II  I + I++ + F+  F L A   LI +
Sbjct: 446 ALAAPMYFVEERVVGPSLGKENIEKGVQSTIIGFILVAIWMVVFFRL-FGLIANFALIFN 504

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L   +  G    L  +A ++  IG +V+  V++ +R+R+ M+      S +  I  
Sbjct: 505 LAMILTVMSWLGASLTLPGIAGIVITIGMAVDANVLICERIREEMRW---GASPKQAIVA 561

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +      V +++  F+    +   G   I  FA+ +  GIV +  ++I +   I+  I
Sbjct: 562 GYDRAYNTIVDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLI 621

Query: 824 YDWRAKNARI 833
           Y  R    ++
Sbjct: 622 YGKRRNLTKL 631



 Score = 41.6 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 1  MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44
          MR   W  +L  ++  I  L ALP+  P     +   A    +I
Sbjct: 1  MRYPAWKYLLILVVFVISTLYALPSLYPDEPAVQISGAKAGTQI 44


>gi|40063325|gb|AAR38143.1| protein-export membrane protein SecF [uncultured marine bacterium
           578]
          Length = 308

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 93/289 (32%), Positives = 157/289 (54%), Gaps = 7/289 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I F+  R + +  S +  + SI  +   GL +GIDF GG  + +   +  DL  +RS L 
Sbjct: 11  INFVGNRKYALIFSAILLVVSIASIGFQGLKFGIDFTGGTLIELGYEKTADLEDIRSKLT 70

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           S      + Q F  +   L++L              ++    I  +     ++  E VGP
Sbjct: 71  SANYKGTNVQYFGSDTEVLIQL------EPQAASSAKLSASIIRMLGDDLDVRRVEFVGP 124

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL   G + ++ + I +LIY+  RF++ FALG+I  L+ D+  T+G F+L  IEF+
Sbjct: 125 KVGEELTNDGGLAMLYALIGILIYVAFRFEYRFALGSIAALVHDVIITIGIFSLLQIEFD 184

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AA+L +IGYS+ND +VV+DR+R+N        S   +++ ++N+TL R++ TS+  
Sbjct: 185 LTVLAAILAVIGYSLNDTIVVFDRIRENFLSTRHIES-GPIVNDALNQTLTRTLMTSLTT 243

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            I +L +   GG VI SFA  +  G+V+   SSI++A+ ++L +   + 
Sbjct: 244 LIVLLALFYLGGEVIHSFAGALIIGVVIGTYSSIYVASSMILALGISKE 292


>gi|325144006|gb|EGC66316.1| protein-export membrane protein SecD [Neisseria meningitidis
           M01-240013]
 gi|325206544|gb|ADZ01997.1| protein-export membrane protein SecD [Neisseria meningitidis
           M04-240196]
          Length = 617

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596


>gi|296536038|ref|ZP_06898177.1| protein-export membrane protein SecD [Roseomonas cervicalis ATCC
           49957]
 gi|296263644|gb|EFH10130.1| protein-export membrane protein SecD [Roseomonas cervicalis ATCC
           49957]
          Length = 528

 Score =  220 bits (559), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 209/525 (39%), Positives = 318/525 (60%), Gaps = 8/525 (1%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W V     +  +G+L++LPN +P+      PS +P   ISLGLDLRGGS+L+LEVD + 
Sbjct: 6   RWKVAAILGVVLLGVLLSLPNLVPR---SAMPSWLPARTISLGLDLRGGSYLLLEVDLNA 62

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQI--QNKITLSFADSRFKENIADKVTLFLQGV 122
            V   L+  +D  R+ L++  +G  +++      +++L   D    +     +      V
Sbjct: 63  VVRERLESLADGARTRLRQANVGYLNLQADAANERLSLRLRDPGQTQAALAALRELASPV 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                         +  +  I+  LS+  +    S A+EQS+EI+R+RID+ G++E+ I 
Sbjct: 123 PVGGGATAPDVEFASQPDGTITARLSEPALRARASGAVEQSIEIVRRRIDETGVAEALIA 182

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR---DSDGN 239
           R GS RIL+QLPG +DP+R+++LLG TA+M+F  V    +    +          +  G 
Sbjct: 183 RQGSSRILVQLPGVEDPNRIKELLGRTARMTFRLVDETANPAAALPPPGVEFLEGEQGGT 242

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           ++ V  ++E+ G +L+ A A  D ++ + VV  SFD +G RRF E+TR N+ +P A+VLD
Sbjct: 243 RFAVRRRIEVDGANLSDARAAQDGRSGEWVVSFSFDSVGTRRFAEITRQNVNRPFAIVLD 302

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            +V+TAPVI + I  G+ QISGNFT ++A  LA +LRAG+LP  L +VEER VG +LG+D
Sbjct: 303 NKVITAPVIREPITGGRGQISGNFTAQSANDLAVLLRAGALPAPLTVVEERTVGPELGAD 362

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I  G  ++  G   +V +M   YG +G  A+ ++ +N+ L +  LS+LGATLTLP IAG
Sbjct: 363 AIRAGLASLAVGAAFVVAYMGFAYGLFGWFANLALLVNLTLLMGALSVLGATLTLPGIAG 422

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G AVD+NIL+NERIREE R  +S   +L+ GF++A  TI DSN+T LIA   L+ 
Sbjct: 423 IVLTLGTAVDANILINERIREEVRAGRSPIQALEAGFTKASGTILDSNLTNLIAMACLYG 482

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           FG G VRGFA+T+ +  + SM++A  +VR MM    R ++ K++ 
Sbjct: 483 FGSGPVRGFAVTVAIGTIASMWSATILVRLMMAGWYRSRRPKALP 527



 Score =  117 bits (292), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  + IR G+  + + A  ++ Y+   +   F   A   L++++T  +G  ++ G  
Sbjct: 356 GPELGADAIRAGLASLAVGAAFVVAYMGFAYGL-FGWFANLALLVNLTLLMGALSVLGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++      S    ++    +  G  + +++
Sbjct: 415 LTLPGIAGIVLTLGTAVDANILINERIREEVRA---GRSPIQALEAGFTKASGTILDSNL 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I++  +  +G   +  FA+ +A G + +  S+  +   ++   Y  R   A
Sbjct: 472 TNLIAMACLYGFGSGPVRGFAVTVAIGTIASMWSATILVRLMMAGWYRSRRPKA 525


>gi|218767743|ref|YP_002342255.1| preprotein translocase subunit SecD [Neisseria meningitidis Z2491]
 gi|121051751|emb|CAM08055.1| putative protein-export membrane protein [Neisseria meningitidis
           Z2491]
          Length = 618

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 332

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597


>gi|311280703|ref|YP_003942934.1| protein-export membrane protein SecF [Enterobacter cloacae SCF1]
 gi|308749898|gb|ADO49650.1| protein-export membrane protein SecF [Enterobacter cloacae SCF1]
          Length = 323

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  + +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFGISGLLLVLAIIVMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PVD+  +R +LE     +   QNF    + +VR+    G    Q    +++         
Sbjct: 65  PVDMDQMRLSLEKAGFNEPQLQNFGSSHDIMVRMPPVKGADGGQELGSKVLAVVNESTSQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + I++LIY+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQSGAMALMAALISILIYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG ++  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLVVILMLFLFGGPILEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|258514411|ref|YP_003190633.1| preprotein translocase subunit SecF [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778116|gb|ACV62010.1| protein-export membrane protein SecF [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 291

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 88/293 (30%), Positives = 143/293 (48%), Gaps = 7/293 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
            + +R R     IS+L  I  +  LF  GLN GIDF GG    V  N+ V ++ +R+ L 
Sbjct: 3   FEIVRRRKIWYVISLLVLIPGLISLFVQGLNLGIDFTGGNIFEVRFNKQVTVNELRNALS 62

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             ++ D   Q   G         Y              V   +   +   T+   + VGP
Sbjct: 63  EYELQDSVIQQSGGND-------YIIRTKELSLAESGKVVSGLKSKLGELTVMKNDQVGP 115

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I +EL R  ++ ++++ + ML YI  RF++   + A+  LI D+    G F+LF +E +
Sbjct: 116 TIGKELTRNALLALLVAFMLMLGYISWRFEFKQGVAALLALIHDVFVVTGIFSLFQLEVD 175

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
              VAA+LT+IGYS+ND +V++DR+R+NM       S  +L++ S+ +T+ RS+ T M  
Sbjct: 176 SYFVAAILTIIGYSINDTIVIFDRIRENMLSRKKGQSLEELVNSSLWQTMARSINTVMTV 235

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +L +   GGS I  F + +  G+     SSIF A+ I + +        +
Sbjct: 236 IFVLLALFFLGGSTIKIFVLALLIGVFSGCYSSIFNASQIWVDLKLMEGNKKK 288


>gi|254303695|ref|ZP_04971053.1| protein translocase subunit SecF [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148323887|gb|EDK89137.1| protein translocase subunit SecF [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 317

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 83/295 (28%), Positives = 147/295 (49%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             + +  ++     + IS +    SI + FT GLNYGIDF GG    +            
Sbjct: 1   MKVNLHIIKRIKLYLSISTVLVTLSIIVFFTKGLNYGIDFSGGNLFQLKYTETTVTLNQI 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +        ++   N +  K  +                 +    +  + +    +   +
Sbjct: 61  NENLDKLAEELPQVNSNSRKVQISNDGTVIVRVPELNEADKDKVLESLKNLGAYNLDKED 120

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  I  +L +  I  + I AI ++IYI +RF++ FA+G I +L+ DI   +GF AL G
Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVIYITMRFEFSFAVGGILSLLHDIIIAVGFIALMG 180

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E +   +AA+LT++GYS+ND +V+YDR+R+N+K      +  + +D+S+N+T  RS+ T
Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEECMDESVNQTAIRSINT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           S+    SV+ + ++GG+ + +F + +  GI+    SSIF+A PI+  +   +  N
Sbjct: 241 SVTTLFSVIAILIFGGASLKTFIMTLLIGILAGTYSSIFVATPIVYLLNKRKGNN 295


>gi|304388153|ref|ZP_07370277.1| protein-export membrane protein SecD [Neisseria meningitidis ATCC
           13091]
 gi|304337862|gb|EFM04007.1| protein-export membrane protein SecD [Neisseria meningitidis ATCC
           13091]
          Length = 618

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 332

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597


>gi|145637215|ref|ZP_01792877.1| preprotein translocase subunit SecF [Haemophilus influenzae PittHH]
 gi|145269660|gb|EDK09601.1| preprotein translocase subunit SecF [Haemophilus influenzae PittHH]
          Length = 324

 Score =  220 bits (559), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 156/309 (50%), Gaps = 5/309 (1%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                        +       +FM+ R +G  +S L  + S+  + T G N+G+DF GG+
Sbjct: 6   KDKDGHFIREINGIKLPFPLTEFMKVRKFGYILSALLMVISLFFIITKGFNWGLDFTGGV 65

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                 ++  +L  +RS L    I     Q     ++ ++RL     DS     + E VK
Sbjct: 66  VFDTHFSQSANLEQIRSKLHENGIESPIVQTTGSVQDVMIRLPASNNDST----IGEHVK 121

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +     I++ E VGP +  EL +  +   + +   +LIY+  RF+W    G+I +
Sbjct: 122 SMLQNVDKDIQIRSIEFVGPNVGEELAQGAVYATLATLAMVLIYVGSRFEWRLGFGSIAS 181

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  D+  TLG F+   IE +LT VAA+L+++GYS+ND +VV+DR+R+N +     +   D
Sbjct: 182 LAHDVIITLGVFSALQIEIDLTFVAAILSVVGYSINDSIVVFDRVRENFRKI-RRLDTID 240

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +ID S+ +TL R++ TS+   + V+ +  +GGS I +F++ +  GI     SSIF+A  I
Sbjct: 241 IIDISLTQTLSRTIITSVTTLVVVMALFFFGGSSIHNFSLALLVGIGFGTYSSIFVAIAI 300

Query: 820 LLFIYDWRA 828
              +   R 
Sbjct: 301 AYDVGLRRE 309


>gi|300703080|ref|YP_003744682.1| sec/yeg protein translocase auxillary subunit [Ralstonia
           solanacearum CFBP2957]
 gi|299070743|emb|CBJ42038.1| SecYEG protein translocase auxillary subunit [Ralstonia
           solanacearum CFBP2957]
          Length = 627

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 170/515 (33%), Positives = 274/515 (53%), Gaps = 26/515 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL   P +L                + LGLDLRGG H +L+VD +  +   L   
Sbjct: 109 IVALNLLSGSPRWLTAIHA---------LPMFLGLDLRGGVHFLLQVDMNGALTKKLDSL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+ +G+    + +    I++ F++    E     +    +        +    
Sbjct: 160 AGDIRTQLRDKGVRHNGIERSGTTISIKFSNPDEAERARGLLADSTR--------ELTFA 211

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
              T     ++   +   + +V  +A++Q++  +  R++++G+SE  IQ+ G  RI++QL
Sbjct: 212 SDKTADGVTLTGTFTAAAMKEVQDNAVKQNVVTLHNRVNELGVSEPVIQQQGPDRIVVQL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248
           PG QD ++ + ++G TA +      PN +           G        G   L++ +V 
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARMADPNATGIPRLTDPVPLGDELFTQGRGAPVLLQKQVI 331

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +N A+A FD   H P VDI+ D  G R   +++RDNIGK +A+VL  +    +  
Sbjct: 332 FTGDRINSASAGFDQN-HNPSVDITLDGQGGRMLRDISRDNIGKRMAIVLFEKGKGEVLT 390

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  ++E+A  LA +LRAGSL   + I+EER +G  LG+D+I KG 
Sbjct: 391 VATIQSELGSRFQITGIGSVESASDLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGF 450

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            +   G   I +FM++ Y  +G  +  S+ +NV L +A+LS+L ATLTLP IA I L +G
Sbjct: 451 DSAAYGFAAISVFMVLYYMLFGAFSVVSLGVNVFLLIAILSMLQATLTLPGIAAIALALG 510

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NERIREE R   S   ++  GF RA++TI DSN+T LIA + L  FG G V
Sbjct: 511 MAIDANVLINERIREELRNGASPQMAIAAGFERAWATILDSNVTTLIAGLALLAFGSGPV 570

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           RGFA+   L IL SMF+A+   R+++      KK 
Sbjct: 571 RGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKKK 605



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 78/181 (43%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG         A+ +++ + +   F   ++ +L +++   +
Sbjct: 429 MEIIEERTIGPSLGADNIKKGFDSAAYGFAAISVFMVLYY-MLFGAFSVVSLGVNVFLLI 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++      S +  I       
Sbjct: 488 AILSMLQATLTLPGIAAIALALGMAIDANVLINERIREELR---NGASPQMAIAAGFERA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FA+    GI+ +  S++F    ++   Y  + 
Sbjct: 545 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRSLVNLWYGRKK 604

Query: 829 K 829
           K
Sbjct: 605 K 605



 Score = 37.7 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR 34
          R   W  ++  +   IG L  LPNF  ++   +
Sbjct: 3  RYPLWKYLVILVALAIGFLYTLPNFFGEAPAVQ 35


>gi|242240319|ref|YP_002988500.1| preprotein translocase subunit SecF [Dickeya dadantii Ech703]
 gi|242132376|gb|ACS86678.1| protein-export membrane protein SecF [Dickeya dadantii Ech703]
          Length = 323

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  G+S L  + SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYWAFGLSGLLLLLSILVMGVRGFNWGLDFTGGTVIEISLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            VDL  +R  LE     D   QNF   ++ +VR     G++  Q    ++V         
Sbjct: 65  SVDLEQMREALEKAGFADPLVQNFGSSRDIMVRTPPAKGETGGQVLGSKVVNVINETTSQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + I +LIY+  RF+W  A G +  L  D+  T
Sbjct: 125 NAVVKRIEFVGPSVGADLAQTGAMALMAALICILIYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 MGVLSLFNIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG+++  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGAMLRGFSLTMLIGVTIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|114771852|ref|ZP_01449245.1| protein-export membrane protein SecF [alpha proteobacterium
           HTCC2255]
 gi|114547668|gb|EAU50559.1| protein-export membrane protein SecF [alpha proteobacterium
           HTCC2255]
          Length = 322

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 116/304 (38%), Positives = 180/304 (59%), Gaps = 6/304 (1%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+PD I I F ++     G S+L  + SI L F +GLN GIDF GG  +   A   
Sbjct: 1   MRLKLVPDNIKINFFQSTRLTFGASVLAMVISIFLFFFNGLNLGIDFLGGTTIRTDAQTS 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGE-----KNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           VD+   RS L+ L +GD++                +R + Q G+  A   V+  VK  + 
Sbjct: 61  VDVGAYRSALKPLDLGDVTVTEIFDVTKPDLNAAQIRFEAQSGEEAATVEVIRAVKAALL 120

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +    T    E VGP++S EL++  I  V+ +  A+L YIW+RF+W F++GAI  L+ D
Sbjct: 121 SLDETITFPQVESVGPEVSGELVQAAITAVLAAIGAVLFYIWLRFEWQFSVGAIAALVHD 180

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T+G F+L  I+F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y  ++  +DL++ 
Sbjct: 181 IVITIGIFSLLQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKYKKTL-LKDLLNM 239

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           SINETL R+V TS+   I+++ + + GG VI  F   M +G+++   SS+F+A+ ILL +
Sbjct: 240 SINETLSRTVMTSLTTLIALISLFILGGDVIHGFVFAMIWGVIIGTYSSVFVASSILLRL 299

Query: 824 YDWR 827
              R
Sbjct: 300 GVKR 303


>gi|59712573|ref|YP_205349.1| preprotein translocase subunit SecF [Vibrio fischeri ES114]
 gi|197334697|ref|YP_002156794.1| protein-export membrane protein SecF [Vibrio fischeri MJ11]
 gi|59480674|gb|AAW86461.1| SecYEG protein translocase auxillary subunit [Vibrio fischeri
           ES114]
 gi|197316187|gb|ACH65634.1| protein-export membrane protein SecF [Vibrio fischeri MJ11]
          Length = 316

 Score =  220 bits (559), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 161/299 (53%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F L+     I FMR        S+L  I SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQLMKAEKTIDFMRWSKAAFLFSMLMIIASIATLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L  +RS LE+   GD + QNF   ++ +VRLQ +  +   +    +++           
Sbjct: 61  QLPDIRSALEAKGFGDATVQNFGTARDVIVRLQPRE-NVKGEELGNQIISAIKEGTGEQV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S + +L Y+ +RF+W  A GA+  L  DI  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLLCILAYVSMRFQWRLAAGAVLALAHDIIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   IE +LT +AA+LT++GYS+ND +VV+DR+R+N        S  D+I+ +I +TL
Sbjct: 180 IFSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGDSN-DIINDAITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GG++I  FA+ +  GI +   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSATTLFVVIALFTQGGAMIHGFALALLLGITIGTYSSIYVASALALKLGITRE 297


>gi|161350050|ref|YP_157794.2| preprotein translocase subunit SecD [Aromatoleum aromaticum EbN1]
          Length = 621

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 184/517 (35%), Positives = 284/517 (54%), Gaps = 26/517 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL A P +L                + LGLDLRGG H +LEVD    +   L   
Sbjct: 105 IVALNLLSASPTWLTAIHA---------LPMYLGLDLRGGVHFLLEVDMPGAITKRLDAT 155

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + +LR+ L+ + +    + +  N + L F D+  +E   + +    + +      D    
Sbjct: 156 AGDLRTLLRDKDVRHAGIVREGNTVQLRFRDAAQREAARNAILNSTRDLQLVDRDDG--- 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
               +T+ ++   L+      +   AI+Q++  +  RI+++G++E  IQ+ G++RI++QL
Sbjct: 213 ----STDLKLIATLTPVAQQTIRDFAIKQNITTLHNRINELGVAEPVIQQQGANRIVVQL 268

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKV 247
           PG QD ++ + +LG TA +    V  +             FG     +  G+  LV  +V
Sbjct: 269 PGVQDVAKAKDILGRTATLEVRMVDDSPGALEAALAGNVPFGTELYTERGGSPLLVRSQV 328

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVL 303
            ++G  L  A   FD +T++P V ++ D  G+R F +VTR+N+GK +         G V+
Sbjct: 329 VLTGDRLTDAQPGFDGQTNEPAVHLTLDAAGSRIFRDVTRENVGKRMAILLIEKGKGEVV 388

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           TAPVI   I  G+ QISG+ T   A  +A +LRAGSL   + I+EER VG  LG+D+I K
Sbjct: 389 TAPVIRSEIGGGRVQISGSMTTTEANDVALLLRAGSLAAPMEIIEERTVGPSLGADNIAK 448

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  + + G + I +FMI  Y  +GL++  ++  N++L +ALLSLL ATLTLP IA + L 
Sbjct: 449 GFNSTLWGFIAIAVFMIAYYMLFGLISAIALAANLLLLVALLSLLQATLTLPGIAAMALT 508

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+A+D+N+L+NERIREE R   S   ++  G+ RA+ TI DSNIT LIA + L  FG G
Sbjct: 509 LGMAIDANVLINERIREELRNGVSPQAAIHTGYDRAFDTILDSNITTLIAGIALLVFGSG 568

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            VRGFA+   L IL SMF+AI I R ++  I   ++ 
Sbjct: 569 PVRGFAVVHCLGILTSMFSAILISRMLVNLIYGRRRK 605



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 85/208 (40%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     VGP +  + I KG    +   IA+ 
Sbjct: 402 VQISGSMTTTEANDVALLLRAGSLAAPMEIIEERTVGPSLGADNIAKGFNSTLWGFIAIA 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++   +   F L +   L  ++   +   +L      L  +AA+   +G +++  V++ 
Sbjct: 462 VFMIAYY-MLFGLISAIALAANLLLLVALLSLLQATLTLPGIAAMALTLGMAIDANVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +S +  I    +      + +++   I+ + + V+G   +  FA+  
Sbjct: 521 ERIREELR---NGVSPQAAIHTGYDRAFDTILDSNITTLIAGIALLVFGSGPVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  S+I I+  ++  IY  R K
Sbjct: 578 CLGILTSMFSAILISRMLVNLIYGRRRK 605



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 30/120 (25%), Gaps = 25/120 (20%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  IL  ++   GL+  LPNF  +                            ++V 
Sbjct: 3   RYPLWKNILIGLVLFFGLIYTLPNFYGEVPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                          +   L+   +    +    N I +    +  +    D +   L  
Sbjct: 38  SGKATLKLDPALVAPIEQTLRDAEVPYDGLFVDGNSIRVRLGSTEDQLRAKDSIEKRLNP 97


>gi|320186038|gb|EFW60783.1| Protein-export membrane protein SecF [Shigella flexneri CDC 796-83]
          Length = 323

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    +++K        
Sbjct: 65  PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGEDLTQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|255321130|ref|ZP_05362296.1| protein-export membrane protein SecD [Acinetobacter radioresistens
           SK82]
 gi|262380181|ref|ZP_06073336.1| protein-export membrane protein SecD [Acinetobacter radioresistens
           SH164]
 gi|255301684|gb|EET80935.1| protein-export membrane protein SecD [Acinetobacter radioresistens
           SK82]
 gi|262298375|gb|EEY86289.1| protein-export membrane protein SecD [Acinetobacter radioresistens
           SH164]
          Length = 633

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 159/535 (29%), Positives = 275/535 (51%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  ++  ++  + +LR  L++  +
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKALSQRMETSATDLRRQLRENNL 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+    N+I L FA +  +E + D +                +  L ++T   + + 
Sbjct: 163 KFNSLTLNNNQINLQFAQNDDREAVMDFLRRNGNEF--------TQQALASSTGPMLRLT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ S+A+ Q++  +R RI+++G++E+ +Q  GS+RI++ LPG QD +  +++L
Sbjct: 215 YTDARRQEIQSYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVDLPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKVLP--------------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V                            +     G Q L++    ++G 
Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGKSNGQPLPPGTELFAYESLDSGRQLLLQRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   T    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDTGGAEVNITLDSAGGKLMADATRNAVGKRMAVLFIENKQRISYVTDPV 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QA+   + +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGTQTEVRTPYAESVVINAATIQAVLGSQFRITGLDSPQEASELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I KG  +   G +L+ ++M+V +  +GL+A+F++  N+ +TL+++S 
Sbjct: 455 EERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRLFGLIANFALVFNLAMTLSIMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +GA LTLP IAGIV+ IG+AVD+N+L+ ERIREE +   S   ++  G+ RAY+TIFDSN
Sbjct: 515 IGAALTLPGIAGIVITIGMAVDANVLICERIREEMKWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  +   +LF  G G ++GFA+T+ + I  SMFTAI++ RA++  I   ++   
Sbjct: 575 LTTFLVAFILFAIGTGPIKGFAVTLMIGIACSMFTAITVTRAIVQIIYGKRRNLK 629



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 86/206 (41%), Gaps = 4/206 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              Q      +  +   +          +VGP + +E I KG++   I  + + I++ + 
Sbjct: 430 DSPQEASELALMLRAGALAAPMYFVEERVVGPSLGQENIDKGVLSTQIGFLLVAIWMVVF 489

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           F+  F L A   L+ ++  TL   +  G    L  +A ++  IG +V+  V++ +R+R+ 
Sbjct: 490 FRL-FGLIANFALVFNLAMTLSIMSWIGAALTLPGIAGIVITIGMAVDANVLICERIREE 548

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           MK      S +  I    +        +++  F+    +   G   I  FA+ +  GI  
Sbjct: 549 MKW---GASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIAC 605

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +  ++I +   I+  IY  R    ++
Sbjct: 606 SMFTAITVTRAIVQIIYGKRRNLKKL 631


>gi|71281229|ref|YP_267866.1| preprotein translocase subunit SecF [Colwellia psychrerythraea 34H]
 gi|71146969|gb|AAZ27442.1| protein-export membrane protein SecF [Colwellia psychrerythraea
           34H]
          Length = 315

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 159/298 (53%), Gaps = 2/298 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             ++     + FM  R   +  S L  I SI  L T+ LN+G+DF GG  + V      D
Sbjct: 1   MQILQLKETVNFMSYRKIALVFSALLMIASIFSLATNKLNFGLDFTGGTLIEVGFQEAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  +++    D   Q +   ++ ++RL  +  D  A+    E++            
Sbjct: 61  LEKLRLVMKTNGFADAKVQFYGSSRDVVIRLGLRD-DVKAEMLGNEVLDVLQGATGQTVD 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VG  +  EL  +G + ++ + I +LIY+  RF+W FA+G++  L  D+  TLG 
Sbjct: 120 MRRIEFVGASVGDELAEQGGLAMLTALICILIYVAFRFEWRFAVGSVVALFHDVLLTLGL 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F++  +EF+LT +AA+L +IGYS+ND +VV DR+R+N +    S +  ++I+ S+ +TL 
Sbjct: 180 FSILQLEFDLTVLAAILAVIGYSLNDTIVVSDRIRENFRKVRNSEA-EEIINISLTQTLS 238

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R+  TS+   + +  +   GG++I  FA  + FG+ V   SSI++A+ + L +   + 
Sbjct: 239 RTFITSITTLLVLAALFFQGGALIHGFATALLFGVFVGTYSSIYVASLVALSLGISKE 296


>gi|325207652|gb|ADZ03104.1| protein-export membrane protein SecD [Neisseria meningitidis
           NZ-05/33]
          Length = 618

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 332

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597


>gi|91781853|ref|YP_557059.1| preprotein translocase subunit SecD [Burkholderia xenovorans LB400]
 gi|91685807|gb|ABE29007.1| SecD export membrane protein [Burkholderia xenovorans LB400]
          Length = 695

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 163/516 (31%), Positives = 268/516 (51%), Gaps = 24/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L  A P +L                + LGLDLRGG H +L+VD    +N  L   
Sbjct: 109 IVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+   I    + ++   + ++FAD    +  + ++   +  +       P   
Sbjct: 160 ASDARTLLRDSNIRDGGVNRVNQTVVINFADQATADIASKQLGRSISELQWASQTGPD-- 217

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G++E  IQ+ GS RI+++L
Sbjct: 218 -----GGVQLVGTFTPTVQKAVQDAALKQNITTLHNRVNELGVAEPVIQQQGSDRIVVEL 272

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L+  ++  
Sbjct: 273 PGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQIIF 332

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +   
Sbjct: 333 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVASVSRDNIGKPMAMVLFEKGKGEVLTV 391

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I KG  
Sbjct: 392 ATIQSELGDRFQITGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRKGFH 451

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           ++V G   I +FMI  Y  +G+++   + +N++L +A+LS+L ATLTLP IA I L +G+
Sbjct: 452 SVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALGM 511

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+D+N+L+NER+REE R       ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 512 AIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGIALLAFGSGPVR 571

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           GFAI   + IL SMF+A+   R ++      KK   
Sbjct: 572 GFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 80/185 (43%), Gaps = 4/185 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + IRKG   V+    A+ +++   +   F + ++  L +++   +
Sbjct: 429 MDIIEERTIGPSLGADNIRKGFHSVVWGFAAIAVFMIAYY-MLFGVISMIGLSVNLLLLI 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++        +  I       
Sbjct: 488 AVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGAPPQLAIQNGYAHA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ + +  +G   +  FAI    GI+ +  S++F +  I+   Y  + 
Sbjct: 545 WATILDSNVTTLIAGIALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKK 604

Query: 829 KNARI 833
           K   +
Sbjct: 605 KLKSL 609



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 29/123 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   IGL+  LPN   ++                           ++V 
Sbjct: 3   RYPLWKYAVMLVALVIGLVYTLPNLFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                          + + L    I    +    +     I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDSTTLSAVEAALAANQIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQK 97

Query: 118 FLQ 120
            L 
Sbjct: 98  SLN 100


>gi|312884253|ref|ZP_07743962.1| preprotein translocase subunit SecF [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368026|gb|EFP95569.1| preprotein translocase subunit SecF [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 315

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 163/299 (54%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR   W + +SIL    SI  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKAEKVIDFMRWSKWTMILSILMIGGSIFSLSTKWLNWGLDFTGGTLIEVGFQQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L  +R+ LE+   GD + QNF   ++ +VRL+ + G    +    +++           
Sbjct: 61  QLEEIRTALEAKGFGDATVQNFGSSRDVMVRLRPREG-VAGEMLGHQILDAITQGTGETV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +I S I +L+Y+  RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELAENGGLAIIASLICILLYVSARFQWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   IE +LT VAA+LT++GYS+ND +VV+DR+R+N +      S  ++++ SI +TL
Sbjct: 180 VFSFLQIEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGTS-AEIMNSSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS    + V+ +   GG+ I  FA+ +  GI V   SSI++A+ + L +   + 
Sbjct: 239 SRTLITSGTTLLVVIALFTQGGANIHGFALALLLGITVGTYSSIYVASALALKLGITKE 297


>gi|241766127|ref|ZP_04764036.1| protein-export membrane protein SecD [Acidovorax delafieldii 2AN]
 gi|241363831|gb|EER59161.1| protein-export membrane protein SecD [Acidovorax delafieldii 2AN]
          Length = 627

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 169/514 (32%), Positives = 276/514 (53%), Gaps = 21/514 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N + +S    + +A+    + LGLDLRGG H +L+VD    +    + Y+ ++R+
Sbjct: 104 YIVALNLVSRSP--AWLTALHARPMYLGLDLRGGVHFMLQVDMQAALTKKAESYAGDIRT 161

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+ + I    + +    I +   D   +    + ++            D +        
Sbjct: 162 ALRDKNIRHGGITRDGQAIEIKVRDEATQTAARNLISDQF--------TDLQTTSTPDGG 213

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           E ++   +      +V   A++Q++  +  RI+++G++E  IQ+ G  RI++QLPG QD 
Sbjct: 214 EFKLRAAIKPEATRRVQDQALKQNITTLHNRINELGVAEPVIQQQGVDRIVVQLPGVQDT 273

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEISGI 252
           ++ + +LG TA +    V      +    G   +        D  G   +V+ +V ++G 
Sbjct: 274 AKAKDILGRTATLEVRLVDEGTEARAAEAGRGPVPFGAERYFDRSGQAVIVKKQVILTGE 333

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308
           +L  A   FD +T +P V+++ D  G+R F ++TR+N+GK +         G V+TAPVI
Sbjct: 334 NLTDAQPGFDGQTQEPTVNLTLDAKGSRIFRDITRENVGKRMAIVLFEKGKGEVVTAPVI 393

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I  G+ QISG  T   A   A +LRAGSL   + I+EE  +G  LG+D+I +G  ++
Sbjct: 394 RTEIGGGRVQISGRMTTVEANDTALLLRAGSLAAPMEIIEEFTIGPSLGADNIARGIHSV 453

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
           V G+V +  FM V Y  +G+ +  ++ +NV+L LA+LS+L ATLTLP IA + L +G+A+
Sbjct: 454 VWGMVAVAAFMCVYYRLFGVFSTLALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAI 513

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           DSN+L+NERIREE R   S   ++ MG+ RA++TI DSN+T LI  + L  FG G VRGF
Sbjct: 514 DSNVLINERIREELRDGVSPQAAIHMGYDRAWATILDSNVTTLIVGLALLAFGSGPVRGF 573

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           A+   + IL SMF+A+   R ++      +K   
Sbjct: 574 AVVHCIGILTSMFSAVFFSRGVVNLWYGRQKKLK 607



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 87/212 (41%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I +GI  V+   +A+ 
Sbjct: 402 VQISGRMTTVEANDTALLLRAGSLAAPMEIIEEFTIGPSLGADNIARGIHSVVWGMVAVA 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++  F + +   L +++   L   ++      L  +AA+   +G +++  V++ 
Sbjct: 462 AFMCVYYRL-FGVFSTLALSVNVLLLLAILSMLQATLTLPGIAAMALALGVAIDSNVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +S +  I    +      + +++   I  L +  +G   +  FA+  
Sbjct: 521 ERIREELRD---GVSPQAAIHMGYDRAWATILDSNVTTLIVGLALLAFGSGPVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++F +  ++   Y  + K   +
Sbjct: 578 CIGILTSMFSAVFFSRGVVNLWYGRQKKLKSV 609


>gi|289208481|ref|YP_003460547.1| protein exporter SecD [Thioalkalivibrio sp. K90mix]
 gi|288944112|gb|ADC71811.1| protein-export membrane protein SecD [Thioalkalivibrio sp. K90mix]
          Length = 622

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 165/520 (31%), Positives = 280/520 (53%), Gaps = 35/520 (6%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
               P  +       ++LGLDLRGG H ++EVD D  +   ++ YS+ELR  L++E I  
Sbjct: 107 APATPRWLRAINGQPMALGLDLRGGVHFLMEVDLDAVIGTAMERYSNELRGRLREERISF 166

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            ++ +    +T+ F     +E     +    +      +         +     +   L 
Sbjct: 167 DTVERGSRDLTVMFESEADREAAEGWLQRQYREELVWESRG-------SGDTSRLVATLD 219

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +++ ++   A++Q++  +R R+D++G++E  I + G +RI++QLPG QD +R +++LG 
Sbjct: 220 DDHLTELRRQALQQNISTLRSRVDELGVAEPIIAQQGENRIVVQLPGVQDTARAKEVLGA 279

Query: 209 TAKMSFHKVLPN------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           TA + F  V  +      +       G R   + DG   L++ +V ++G ++  A++   
Sbjct: 280 TATLEFRLVSESGDAQEADETGRAPSGTRLYYERDGTPVLLQRQVMLTGDYITDASSGIA 339

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVL 303
             T  P V I+ D  GAR F  VT DN+G+ +                           +
Sbjct: 340 QDTGGPAVFINLDGQGARIFSRVTSDNVGRLMATVFIETSTETVEEDGEQVMRTSRSEEV 399

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       + QISG  +   A  LA +LRAG+L   ++IVEER VG  LG ++I +
Sbjct: 400 INVARINEPLGRRFQISGLDSSREARNLALLLRAGALAAPMSIVEERTVGPSLGQENIDR 459

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  ++V G + +++FM++ Y  +G++A+ ++ LN+I  +++LS+L ATLTLP IAGIVL 
Sbjct: 460 GMQSVVIGFIAVMIFMVLYYRVFGVIANVALALNLIFIVSVLSMLQATLTLPGIAGIVLT 519

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+ ERIREE R   S   ++  G+ RA++TI D+N+T LIA +VLF FG G
Sbjct: 520 VGMAVDANVLILERIREELRNGLSPQAAIASGYDRAFTTIADANVTTLIAALVLFLFGTG 579

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            ++GFAIT+ + I+ SMFTAI + RA++      ++  + 
Sbjct: 580 PIKGFAITLSIGIIASMFTAIMVTRAIVNLTYGRQRRLNR 619



 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 44/257 (17%), Positives = 103/257 (40%), Gaps = 4/257 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G +   V      +                   N       L R     G   ++     
Sbjct: 368 GRLMATVFIETSTETVEEDGEQVMRTSRSEEVINVARINEPLGRRFQISGLDSSREARNL 427

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +   +    +I     VGP + +E I +G+  V+I  IA++I++ + ++  F + A
Sbjct: 428 ALLLRAGALAAPMSIVEERTVGPSLGQENIDRGMQSVVIGFIAVMIFMVLYYRV-FGVIA 486

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L++   +   ++      L  +A ++  +G +V+  V++ +R+R+ ++     +S
Sbjct: 487 NVALALNLIFIVSVLSMLQATLTLPGIAGIVLTVGMAVDANVLILERIREELR---NGLS 543

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +  I    +         ++   I+ L + ++G   I  FAI ++ GI+ +  ++I + 
Sbjct: 544 PQAAIASGYDRAFTTIADANVTTLIAALVLFLFGTGPIKGFAITLSIGIIASMFTAIMVT 603

Query: 817 APILLFIYDWRAKNARI 833
             I+   Y  + +  R+
Sbjct: 604 RAIVNLTYGRQRRLNRL 620



 Score = 39.3 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 31/124 (25%)

Query: 1   MRN--NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN    WL  L  ++     L A PN  P+                             
Sbjct: 1   MRNSYPAWLYALIVVVILGAGLYAAPNLFPEDPS-------------------------- 34

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
            V   +   G +     EL   +   +G+   ++ +  + +I L F  +  +   A+ + 
Sbjct: 35  -VQIGNPTTGEIDQNIRELMGTILGAQGVTPHTVEEQDDGQILLRFETTDEQSTAAEILR 93

Query: 117 LFLQ 120
             L 
Sbjct: 94  NALD 97


>gi|73542496|ref|YP_297016.1| preprotein translocase subunit SecF [Ralstonia eutropha JMP134]
 gi|72119909|gb|AAZ62172.1| protein translocase subunit secF [Ralstonia eutropha JMP134]
          Length = 323

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 91/305 (29%), Positives = 157/305 (51%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S L    ++  L+  GL+  I+F GG  + V   +  D
Sbjct: 1   MEFFRIRRDIPFMKHALIFNVVSFLTFAAAVFFLWHKGLHLSIEFTGGTVMEVNYQQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ---TRVLEMVKKKITEIVP 647
           L  +R  +  L   D+  QNF   ++ ++RL  Q G    Q    +  E V   +    P
Sbjct: 61  LEKIRGQVGKLGYTDVQVQNFGTSRDVMIRLPLQKGPDGKQVTSAQQSEQVMGALQAATP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G++ ++   I ++IY+  RF+W FA+  I   + D+   
Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLCVVIGIVIYLSFRFEWKFAVAGIIANLHDVVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AA+L ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAAILAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+AA + ++    R
Sbjct: 240 TMSRTIITHGSTEMMVLSMFFFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLIK 304


>gi|330446690|ref|ZP_08310342.1| export membrane protein SecD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490881|dbj|GAA04839.1| export membrane protein SecD [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 606

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 158/536 (29%), Positives = 287/536 (53%), Gaps = 42/536 (7%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P++L                + LGLDLRGG H ++EVD D  +   L   
Sbjct: 89  VVALNLAAATPSWLESIGA---------TPMKLGLDLRGGVHFLMEVDMDAAMEKLLGQQ 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            +  R+ L++E I   ++ + ++ + +   D    E          +    KL+ D    
Sbjct: 140 EETFRTELREEKIRYRAISKTKDSVQVRLRDEAQLEQA--------ELALEKLHPDMVFT 191

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
              T     ++   ++  + ++ ++A++Q++ I+R R++++G++E  +QR G++RI+++L
Sbjct: 192 TSETNGRFVLTAKFTEERLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQGANRIVVEL 251

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVE 248
           PG QD +R +++LG TA + F +V  +             G       DG   +++ +V 
Sbjct: 252 PGVQDTARAKEILGATATLEFREVDSSADLAAAAAGRVPAGSEVKMTRDGRPAVLKKRVI 311

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------ 302
           ++G H+    ++   +  +P V+IS D  G  +    +++N+GK +A V           
Sbjct: 312 LAGSHITD-ASSSADEYGRPQVNISLDTEGGSKMTAFSKNNVGKLMATVFTEYKDSGKRG 370

Query: 303 ------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                       +      Q+      +I+G  +   A  L+ +LRAG+L   ++IVEER
Sbjct: 371 PDGKVILEKHEEVINQATIQSALGRNFRITGIDSQAEAHNLSLLLRAGALIAPISIVEER 430

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG- 409
            +G  +G  +I  G  A + G+V ++LF ++ Y  +GL+A+ ++ +N++L + ++S++  
Sbjct: 431 TIGPSMGQQNIDMGVQACIWGMVAVMLFTLLYYRGFGLIANLALMMNLVLIIGVMSMIPG 490

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R+ +S   ++  G+  A+STI D+NIT
Sbjct: 491 ATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIQQGYGNAFSTIADANIT 550

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            LI  ++LF  G GA++GFA+T+ + IL SMFTAI   RA++  I   K++  + I
Sbjct: 551 TLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRAVVNLIYGGKRVDKLSI 606



 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 82/174 (47%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP + ++ I  G+   I   +A++++  + ++  F L A   L++++   +G  ++  
Sbjct: 431 TIGPSMGQQNIDMGVQACIWGMVAVMLFTLLYYR-GFGLIANLALMMNLVLIIGVMSMIP 489

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R+R+ ++      S +  I +           
Sbjct: 490 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQGYGNAFSTIAD 546

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     ++  IY  + 
Sbjct: 547 ANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRAVVNLIYGGKR 600


>gi|218549931|ref|YP_002383722.1| preprotein translocase subunit SecF [Escherichia fergusonii ATCC
           35469]
 gi|218357472|emb|CAQ90111.1| SecYEG protein translocase auxillary subunit [Escherichia
           fergusonii ATCC 35469]
 gi|324114628|gb|EGC08596.1| protein-export membrane protein SecF [Escherichia fergusonii B253]
 gi|325498308|gb|EGC96167.1| preprotein translocase subunit SecF [Escherichia fergusonii ECD227]
          Length = 323

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 165/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  + SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFGISGLLLVASIIIMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PV++ V+R  L+     +   QNF    + +VR+    G++  Q    ++V         
Sbjct: 65  PVEIDVMRDALQKAGFEEPQLQNFGSSHDIMVRMPPAEGETGGQVLGSKVVTVINEATDQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 HAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +      S+ ++ + S+ +
Sbjct: 185 LGILSLFHIEVDLTIVASLMSVIGYSLNDSIVVCDRIRENFRKIRRGTSY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|262377440|ref|ZP_06070663.1| protein-export membrane protein SecD [Acinetobacter lwoffii SH145]
 gi|262307670|gb|EEY88810.1| protein-export membrane protein SecD [Acinetobacter lwoffii SH145]
          Length = 632

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 156/534 (29%), Positives = 273/534 (51%), Gaps = 49/534 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  ++  ++  + +LR  L+   +
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQLRDNNL 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+    N I + FA++  +    D +                +  + T T   + + 
Sbjct: 163 KFNSLNLSNNTIVMQFANNDDRSATMDFLRRNGNEF--------TQQAVATETGSTLRLN 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ S+A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDVRKQEIESYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKVLPNNSK-------------KGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           G TA + F  V   N +                     +     G Q L+     ++G  
Sbjct: 275 GRTANLEFRLVSDLNDQYIDPYTGQATGALPPGTEVFAYESLDSGRQLLLNRNRILTGER 334

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A++ F   T    V+I+ D  G +   + TR+ +GK +                   
Sbjct: 335 VQNASSGFSQDTGGAEVNITLDSAGGKLMSDATRNAVGKRMAVLFIENKQRINYVEDPAT 394

Query: 295 ------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                        V+      QA+   + +I+G  + + A  LA MLRAG+L   +  VE
Sbjct: 395 GTQTEVRTPYTESVVINAATIQAVLGSQFRITGLDSPQEAAELALMLRAGALAAPMYFVE 454

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG ++I KG  +   G +L+ ++M+V +  +G++A+F++  N+ + L ++S +
Sbjct: 455 ERVIGPSLGQENIDKGVLSTQIGFLLVAIWMVVFFRVFGVIANFALVFNLAMILTVMSWI 514

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+LTLP IAGIV+ IG+AVD+N+L+ ERIREE +   S   ++  G+ RAY+TIFDSN+
Sbjct: 515 GASLTLPGIAGIVITIGMAVDANVLICERIREEMKWGASPKQAIVAGYDRAYNTIFDSNL 574

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           T  +   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   K+   
Sbjct: 575 TTFLVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAVVQLIYGKKRNLK 628



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/206 (18%), Positives = 86/206 (41%), Gaps = 4/206 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              Q      +  +   +          ++GP + +E I KG++   I  + + I++ + 
Sbjct: 429 DSPQEAAELALMLRAGALAAPMYFVEERVIGPSLGQENIDKGVLSTQIGFLLVAIWMVVF 488

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           F+  F + A   L+ ++   L   +  G    L  +A ++  IG +V+  V++ +R+R+ 
Sbjct: 489 FRV-FGVIANFALVFNLAMILTVMSWIGASLTLPGIAGIVITIGMAVDANVLICERIREE 547

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           MK      S +  I    +        +++  F+    +   G   I  FA+ +  GIV 
Sbjct: 548 MKW---GASPKQAIVAGYDRAYNTIFDSNLTTFLVAFILFAIGTGPIKGFAVTLMIGIVC 604

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +  ++I +   ++  IY  +    ++
Sbjct: 605 SMFTAITVTRAVVQLIYGKKRNLKKL 630



 Score = 43.5 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 25/117 (21%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   W  +L  ++  I  L ALP+  P                             +++
Sbjct: 1   MRYPAWKYVLILVVLVISTLYALPSLYPDEPA-------------------------VQI 35

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                          +    LK E I         N   L    S  +    + +  
Sbjct: 36  SGAKAGTQIDASIVQKAEQILKTENIATHDNSFGNNAALLRVDSSESQLKAKEALRR 92


>gi|225025678|ref|ZP_03714870.1| hypothetical protein EIKCOROL_02580 [Eikenella corrodens ATCC
           23834]
 gi|224941571|gb|EEG22780.1| hypothetical protein EIKCOROL_02580 [Eikenella corrodens ATCC
           23834]
          Length = 610

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 167/506 (33%), Positives = 277/506 (54%), Gaps = 26/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++   P  M K   N + LGLDLRGG H  + VD    V+      S + R  L+K+ I
Sbjct: 104 NLIANTPDWMTKLGANPMFLGLDLRGGVHFTMRVDMHAAVDKTFDRISGDFRRQLRKDKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +MR+  + + + F D+   +    K+             +   ++ +      + + 
Sbjct: 164 RTGNMRRSGDTLIVPFQDAATLQAALPKLK------------EIAPDVELKADGNNLVVS 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L +    Q+   A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LPETTQTQIRDAAVKQNINTLHNRVNELGVAEPIIQQAGPDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVL------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           G TA +    V                 G   L  ++G Q LV  +VE +G ++N A A 
Sbjct: 272 GRTATLEVRMVADDPALLQQAEAGNVPAGYELLPTAEGGQLLVSKQVEFTGDNINDAQAG 331

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSGK 316
           F    ++P V++  D  G   F ++TR+N+G+  A++L  +    ++TAP IN+ IP G 
Sbjct: 332 F-THDNRPSVNLKLDNAGTSIFADLTRNNVGRRTAMILIDQGKAEIVTAPTINEPIPGGN 390

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
            QISG+  +  A   A +LRAGSL   + I+EER +G  +G ++I KG  + + G +++ 
Sbjct: 391 VQISGSMNVAEANDTALLLRAGSLAAPMEIIEERTIGPSMGKENIQKGFHSTLWGFLVVA 450

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
            FM+V Y  +G+ +  ++  N++  +A+LSLL ATLTLP IA I L +G+A+DSN+L+NE
Sbjct: 451 AFMVVYYRLFGIFSVLALTANLLFLVAILSLLQATLTLPGIAAIALTLGMAIDSNVLINE 510

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           RIREE R   S   ++  G+  A+ TI DSNIT+LIA + L  FG GAVRGFA+   + I
Sbjct: 511 RIREELRDGVSPQQAISEGYRHAWDTIVDSNITSLIAGIALLVFGSGAVRGFAVVHCIGI 570

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKS 522
           L SMF+++ + R  +      ++  S
Sbjct: 571 LTSMFSSVVVSRTFVNLWYGRRRKLS 596



 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 89/212 (41%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I+KG    +   + + 
Sbjct: 391 VQISGSMNVAEANDTALLLRAGSLAAPMEIIEERTIGPSMGKENIQKGFHSTLWGFLVVA 450

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++  F + ++  L  ++   +   +L      L  +AA+   +G +++  V++ 
Sbjct: 451 AFMVVYYRL-FGIFSVLALTANLLFLVAILSLLQATLTLPGIAAIALTLGMAIDSNVLIN 509

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +S +  I +         V +++ + I+ + + V+G   +  FA+  
Sbjct: 510 ERIREELRD---GVSPQQAISEGYRHAWDTIVDSNITSLIAGIALLVFGSGAVRGFAVVH 566

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  SS+ ++   +   Y  R K + +
Sbjct: 567 CIGILTSMFSSVVVSRTFVNLWYGRRRKLSNL 598



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 32/118 (27%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L  ++  +  + ALPNF  ++   +  +      I                 
Sbjct: 3   RYPLWKYLLIGLVIVVSAIYALPNFYGETPAVQVSTNRQSIHI----------------- 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                +   +    E    LK   I    M      + +   +   +    D +   L
Sbjct: 46  -----DQTTEQAVAEA---LKAANIQHNGMFIADGSLRVRLPNEELQSKARDVIEQKL 95


>gi|322513987|ref|ZP_08067062.1| protein-export membrane protein SecF [Actinobacillus ureae ATCC
           25976]
 gi|322120213|gb|EFX92171.1| protein-export membrane protein SecF [Actinobacillus ureae ATCC
           25976]
          Length = 324

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 94/297 (31%), Positives = 161/297 (54%), Gaps = 4/297 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               + FM+ R+ G   S++ +   I  + T G N+G+DF GG  +    ++P DL  VR
Sbjct: 16  PYKLVPFMKYRYVGFVFSLVVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLGKVR 75

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             LE    G+   Q    +K  ++RL    GD     +++++V + +    P +TI++ E
Sbjct: 76  GLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHQDL---DPSATIKSVE 132

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + +   +L+Y+  RF+   A+G I  L  D+  T+G F+   
Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTIGIFSFLQ 192

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N       +S +++ID S+++TL R++ T
Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKI-RRVSSQEVIDISLSQTLSRTLMT 251

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           S+     V  +  +GG  I SF++ +  GI     SSI+IA  + L +   R    +
Sbjct: 252 SVTTLFVVASLYWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVK 308


>gi|315127831|ref|YP_004069834.1| preprotein translocase subunit SecF [Pseudoalteromonas sp. SM9913]
 gi|315016345|gb|ADT69683.1| preprotein translocase subunit SecF [Pseudoalteromonas sp. SM9913]
          Length = 315

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 165/291 (56%), Gaps = 2/291 (0%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             ++FM  R   +G S L  I S+  LF  GLN+G+DF GG  + V  ++P DL  VR+ 
Sbjct: 9   KTLRFMSLRKVAMGFSTLLIIASLASLFVKGLNFGLDFTGGTAVEVGFSQPADLKKVRNV 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L      D S Q F   +  LVRL  +  D  A+  +   V   + +      ++  E V
Sbjct: 69  LAENDFADASVQLFGSSQEILVRLAPRGDDVKAEV-IGNQVIAALKQADDSVVMRRIEFV 127

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  +L  +G + ++ + I +LIY+  RF+W FA+GA+  L+ D+  T+G F++ G+E
Sbjct: 128 GPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITIGLFSVLGLE 187

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AA+L +IGYS+ND +VV DR+R+N +         ++ID S+ +TL R++ TS+
Sbjct: 188 FDLTILAAILAVIGYSLNDTIVVSDRIRENFRK-VRIDDTIEIIDLSLTQTLNRTLVTSI 246

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + ++ + VWGG  I  FA  + FG+ +   SS+++A+ + + +   + 
Sbjct: 247 TTILVLIALFVWGGQTIHGFATALLFGVFIGTYSSVYVASSVAIAMGVSKE 297


>gi|302383725|ref|YP_003819548.1| protein-export membrane protein SecF [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194353|gb|ADL01925.1| protein-export membrane protein SecF [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 327

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 170/310 (54%), Gaps = 8/310 (2%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV- 583
           +       ++P      F++       +S++    SI   F  GLN GIDF+GG  + V 
Sbjct: 1   MTWWPLIKVLPQKTNFHFVKYARLAAVLSVVLCTASIIGCFYPGLNMGIDFRGGASMEVY 60

Query: 584 -LANRPVDLSVVRSNLE-----SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             A + ++   +R  +       + +  I+ ++ + E      +++Q  +   QT V+  
Sbjct: 61  KPAGQSINAEAIREAVSGLEIGDVGVQGIARRDTNVEDGSTAIVRFQVPEGRDQTAVVNS 120

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           V+  I + V   +    E+VG K+S EL   G++ + ++ + M  YIW RF+  F  GA+
Sbjct: 121 VQSAINQAVGQVSYSGVEVVGSKVSGELFTSGLLALGVAILLMFAYIWFRFEPQFGFGAV 180

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             L+ D+  T G   LF +EF+L  VAA+LT+IGYS+ND VVV+DR+R+N++ Y  ++  
Sbjct: 181 AGLLHDVILTFGLIVLFKLEFSLNMVAAILTVIGYSMNDTVVVFDRLRENLRKY-KTMPL 239

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           R++ID S+NETL R++ T + A + +  +A +GG  +  F+I + FGI++   SSI++ A
Sbjct: 240 REVIDLSLNETLSRTIITGVTAVMVLAALAFFGGEALFGFSIALMFGIIIGTYSSIYVGA 299

Query: 818 PILLFIYDWR 827
           PI+L     R
Sbjct: 300 PIILLWGVKR 309


>gi|67459571|ref|YP_247195.1| preprotein translocase subunit SecF [Rickettsia felis URRWXCal2]
 gi|75536029|sp|Q4UKA5|SECF_RICFE RecName: Full=Protein-export membrane protein secF
 gi|67005104|gb|AAY62030.1| Protein-export membrane protein secF [Rickettsia felis URRWXCal2]
          Length = 308

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+P+ I   FM  +      SI+ S+ S   +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRLLPNKIDFDFMNFKKVSYSFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R  L  L IG++  QNF  E++  +R      +      +  +     +  
Sbjct: 61  DQAPDLPKMRGVLGELGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKASLQSNF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S +A+++YIW+RF+WYF LG +  L+ D+ 
Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ SI
Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    +
Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFAN 298

Query: 826 WRAKNA 831
            +    
Sbjct: 299 RKFNKK 304


>gi|317153242|ref|YP_004121290.1| protein-export membrane protein SecD [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943493|gb|ADU62544.1| protein-export membrane protein SecD [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 531

 Score =  219 bits (558), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 184/527 (34%), Positives = 288/527 (54%), Gaps = 21/527 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M++    ++   ++  +GL   LP+  P        + +P N +SLGLDL+GG HL L V
Sbjct: 1   MQSLRLRILATLVVLILGLAYMLPSI-PGVKESPLGALLPGNSVSLGLDLKGGIHLTLGV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D D  ++  L    D+L++   +EGI +     I +           ++   D V     
Sbjct: 60  DMDTAMHNNLSRLGDDLKAAAAEEGIFILRPTVISSSRLELVLLKGDQKAGFDTVIDRFS 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                     +   ++   + +  + +     D++    ++Q+++ IR RIDQ G++E  
Sbjct: 120 ------PFSVEDTQVLGDGKIKYVLSIPAQYRDELTKLTMDQAIKTIRNRIDQFGVAEPD 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234
           I++    RI IQLPG QDP R   ++G TA + F  V           G+          
Sbjct: 174 IRKQQGDRIQIQLPGLQDPERAINIIGQTAHLEFKMVDDTADLDKAKSGILAPGRELSTL 233

Query: 235 -------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                         +++    ++G ++           ++P V I+F+  G   F  +T 
Sbjct: 234 VTTHAGGGQTEAPIVLKKDAVLTGEYITD-AKVQLDTWNQPYVSITFNARGGTIFANLTG 292

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
           +N+ K +A+VLDG+V +APVI + I  GKA I+GNFT E A  LA +LRAGSLP  + I+
Sbjct: 293 ENVNKRMAIVLDGKVYSAPVIQEKISGGKASITGNFTREEARDLAVVLRAGSLPAPVVIL 352

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E+R VG  LG +SI KG  + + G+ LI++FM+V YG  G+VAD  + LN++L ++ L+L
Sbjct: 353 EQRTVGPSLGQESIDKGIMSALVGMGLILVFMVVYYGFAGVVADLVLCLNIMLIMSGLAL 412

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            GATLTLP IAGI+L IG+AVD+N+++ ERIREE R+  +V  +++ G+SRA  TI D+N
Sbjct: 413 FGATLTLPGIAGIILTIGMAVDANVIIYERIREELRRGLTVRAAIEEGYSRATLTIMDAN 472

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           +T +IA V+L+ FG G VRGFA+T+ L I+ SMFTAI + R +    
Sbjct: 473 VTTIIAAVILYQFGTGPVRGFAVTLTLGIISSMFTAIFVSRILFDLY 519



 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/180 (20%), Positives = 91/180 (50%), Gaps = 4/180 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VGP + +E I KGI+  ++    +L+++ + + +   + A   L L+I   +   AL
Sbjct: 354 QRTVGPSLGQESIDKGIMSALVGMGLILVFMVVYYGF-AGVVADLVLCLNIMLIMSGLAL 412

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  IG +V+  V++Y+R+R+ ++     ++ R  I++  +      +
Sbjct: 413 FGATLTLPGIAGIILTIGMAVDANVIIYERIREELR---RGLTVRAAIEEGYSRATLTIM 469

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++   I+ + +  +G   +  FA+ +  GI+ +  ++IF++  +        +++A++
Sbjct: 470 DANVTTIIAAVILYQFGTGPVRGFAVTLTLGIISSMFTAIFVSRILFDLYTKSGSQSAKL 529


>gi|254419182|ref|ZP_05032906.1| protein-export membrane protein SecF [Brevundimonas sp. BAL3]
 gi|196185359|gb|EDX80335.1| protein-export membrane protein SecF [Brevundimonas sp. BAL3]
          Length = 329

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 105/310 (33%), Positives = 176/310 (56%), Gaps = 8/310 (2%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV- 583
           +       L+P      F++   +   +S++  + SI   F  GLN GIDF+GG  + V 
Sbjct: 3   MRGWPFIKLLPQKTNFHFVKYARFAAVLSVVLCVASIVACFVPGLNMGIDFRGGASMEVS 62

Query: 584 -LANRPVDLSVVRSNLESLQIGDISFQ-----NFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             A + ++L  VR  + SL +GD+  Q     + + +      L++Q  +   QT+V+  
Sbjct: 63  KPAGQAIELDRVREAVNSLNLGDVQVQGIARRDTNVDDGSTAILRFQVPEGRDQTQVVNQ 122

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           V+  I++ V         +VG K+S EL   G++ + ++   M +YIW RF+  F  GA+
Sbjct: 123 VETAISQTVGEVQYSGVSVVGSKVSGELFTSGLLALGVAIGLMFLYIWFRFEPQFGFGAV 182

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             L+ D+  T G   LF +EF+L  VAA+LT+IGYS+ND VVV+DR+R+N++ Y  ++  
Sbjct: 183 IGLLHDVVLTFGLIVLFRLEFSLNMVAAILTVIGYSMNDTVVVFDRLRENLRKY-KTMPL 241

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           R++ID S+NETL R++ T + A + +  +A++GG  +  F+I + FGI++   SSI++ A
Sbjct: 242 REVIDLSLNETLSRTIITGVTAVMVLAALAIFGGEALFGFSIALMFGIIIGTYSSIYVGA 301

Query: 818 PILLFIYDWR 827
           PI+L     R
Sbjct: 302 PIILLWGVKR 311


>gi|90407020|ref|ZP_01215210.1| protein export protein SecF [Psychromonas sp. CNPT3]
 gi|90311891|gb|EAS39986.1| protein export protein SecF [Psychromonas sp. CNPT3]
          Length = 315

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/298 (32%), Positives = 159/298 (53%), Gaps = 2/298 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              +      I FMR       +S +    SI  L  + LN+G+DF GG  + V   + V
Sbjct: 1   MLQIFQPKNTIHFMRYSKRTTVLSFVLMAASILTLSINWLNWGLDFTGGTLIEVGFEQSV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  VR+ L   Q      Q F    + L+RL  + G         +++           
Sbjct: 61  NLPEVRTVLGEAQYSGAIVQYFGSSHDILIRLASEEG-VKGSVIGSKILHALQGADFGQV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +II+ + +L Y+ +RF+W  A GA+ +L+ DI  TLG
Sbjct: 120 DMRRIEFVGPNVGAELAENGALAMIIALLCILAYVSLRFEWRLATGAVLSLVHDILITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+ F +EF+LT +AA+L +IGYS+ND +VV+DR+R+N +   T+ S  D++D SI +TL
Sbjct: 180 IFSFFQLEFDLTVLAALLAIIGYSLNDTIVVFDRIRENFRKLVTASSV-DVVDISITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            R++ +S+   + ++ + + GG +I  FA  +  GIVV   SSI++A+ + + +   R
Sbjct: 239 SRTLISSLTTLLVLISLFLVGGELIHGFATALLIGIVVGTYSSIYVASAVAIKLGTSR 296


>gi|307261550|ref|ZP_07543218.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868673|gb|EFN00482.1| Protein-export membrane protein SecF [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 324

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 95/297 (31%), Positives = 161/297 (54%), Gaps = 4/297 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM+ R+ G   S++ +   I  + T G N+G+DF GG  +    ++P DLS VR
Sbjct: 16  PYKLIPFMKYRYVGFVFSLIVTALCIFSIVTKGFNWGLDFTGGTVIETTFSQPADLSKVR 75

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             LE    G+   Q    +K  ++RL    GD     +++ +V + +    P +TI++ E
Sbjct: 76  GLLEQNGYGNALVQTTGSQKELMIRLPASAGDMSLGNKIMVLVHQDL---DPAATIKSVE 132

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + +   +L+Y+  RF+   A+G I  L  D+  T+G F+   
Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTIGIFSFLQ 192

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N       ++ +++ID S+++TL R++ T
Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKI-RRVTSQEVIDISLSQTLSRTLMT 251

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           S+     V  +  +GG  I SF++ +  GI     SSI+IA  + L +   R    +
Sbjct: 252 SVTTLFVVAALFWFGGPTIHSFSLALLIGIGFGTYSSIYIAIGVALQLGLNREHMVK 308


>gi|251790674|ref|YP_003005395.1| preprotein translocase subunit SecF [Dickeya zeae Ech1591]
 gi|247539295|gb|ACT07916.1| protein-export membrane protein SecF [Dickeya zeae Ech1591]
          Length = 323

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  G+S L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYWAFGLSGLLLILSIAVMGVRGFNWGLDFTGGTVIEISLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            VDL  +R  L+     D   QNF   ++ +VR+     +S  Q    ++V         
Sbjct: 65  SVDLEQMREALQKAGFADPLVQNFGSSRDIMVRMPPAHDESGGQALGSKVVNVINESTSQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + I+  E VGP +  +L + G + ++ + I++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAIKRIEFVGPSVGADLAQNGAMALMAALISILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 MGILSLFDIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGAMLKGFSLTMLIGVAIGTVSSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|224826517|ref|ZP_03699618.1| protein-export membrane protein SecD [Lutiella nitroferrum 2002]
 gi|224601118|gb|EEG07300.1| protein-export membrane protein SecD [Lutiella nitroferrum 2002]
          Length = 613

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 175/520 (33%), Positives = 281/520 (54%), Gaps = 33/520 (6%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL A P++L +              + LGLDLRGG H +LEVD     +  ++ Y
Sbjct: 100 IIALNLLAASPDWLTKLKA---------YPMFLGLDLRGGVHFLLEVDMKAATDKTMERY 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R   K + +   ++++  N + +   D+   +   D V   L  ++          
Sbjct: 151 AGDIRREFKDKKVRYGAIKRNGNTLEVQLRDAATLKAAEDAVARALPSLS---------- 200

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++S+ L    I ++ S A++Q++  +  R++++G++E  IQ+ G++RI++QL
Sbjct: 201 FTSDDNSYKLSLTLKPEEITRIQSDAVKQNITTLHNRVNELGVAEPIIQQSGANRIVVQL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNN---------SKKGFMFGVRFLRDSDGNQYLVE 244
           PG QD ++ + +LG TA +    V  +          +  G    +  L      + LV 
Sbjct: 261 PGVQDTAKAKDILGRTATLEVRMVSDDQSMVAEALAGNVPGGYELLDELTPRGPQKILVS 320

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL----DG 300
            +VE++G ++N A   FD       V I+ D  GA  F +VT +NIGK +A+VL      
Sbjct: 321 KEVELTGDNINDAQPGFDENGTPA-VHINLDSTGASIFRQVTAENIGKRMAMVLVEKGRA 379

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            V+TAPVI   I  G+ QISG+     A   A +LRAGSL   +NI+EER VG  LG ++
Sbjct: 380 EVVTAPVIRSEIGGGRVQISGSMNAAEANDTALLLRAGSLAAPMNIIEERTVGPSLGKEN 439

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I KG  + + G   I +FM++ Y  +GL++  S+ +N+ + +A+LS+L ATLTLP IA I
Sbjct: 440 IEKGFHSTLWGFATIAVFMLIYYRVFGLISALSLGVNLFMLVAVLSMLQATLTLPGIAAI 499

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+A+D+N+L+NERIREE R       ++  G+  A++TI DSNIT LIA + L  F
Sbjct: 500 ALTLGMAIDANVLINERIREELRNGVPPHSAIQAGYQHAWATILDSNITTLIAGLALLIF 559

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G G VRGFA+   L I+ SMF+A+ + R  +      K+ 
Sbjct: 560 GSGPVRGFAVVHCLGIMTSMFSAVLVSRGFVNLWYGRKRR 599



 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 84/208 (40%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G   A       +  +   +     I     VGP + +E I KG    +     + 
Sbjct: 396 VQISGSMNAAEANDTALLLRAGSLAAPMNIIEERTVGPSLGKENIEKGFHSTLWGFATIA 455

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ I ++  F L +  +L +++   +   ++      L  +AA+   +G +++  V++ 
Sbjct: 456 VFMLIYYRV-FGLISALSLGVNLFMLVAVLSMLQATLTLPGIAAIALTLGMAIDANVLIN 514

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +     I           + +++   I+ L + ++G   +  FA+  
Sbjct: 515 ERIREELR---NGVPPHSAIQAGYQHAWATILDSNITTLIAGLALLIFGSGPVRGFAVVH 571

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  S++ ++   +   Y  + +
Sbjct: 572 CLGIMTSMFSAVLVSRGFVNLWYGRKRR 599


>gi|254487569|ref|ZP_05100774.1| protein-export membrane protein SecF [Roseobacter sp. GAI101]
 gi|214044438|gb|EEB85076.1| protein-export membrane protein SecF [Roseobacter sp. GAI101]
          Length = 322

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 111/311 (35%), Positives = 185/311 (59%), Gaps = 7/311 (2%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           + R  L+PD   I F +      G S +  + ++ + FT GLNYGIDF+GG  L   ++ 
Sbjct: 1   MIRLKLVPDNTNIDFFKHAKLTFGASCVAVVLALAVWFTMGLNYGIDFRGGTTLRTQSDT 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKK 641
            VD++  R+ L+ L++GDIS        +       +VR+Q Q G+  A   ++  V+  
Sbjct: 61  VVDVAAYRNALDPLELGDISISEVFDPTSDGTKHVAMVRIQSQEGEEAATPEMIANVETA 120

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +  + P     + E VGPK+S ELI+   + V  S  A+LIYIW+RF+W F++GA+  L 
Sbjct: 121 LKTVAPNIIFTSVESVGPKVSGELIQTAFLAVGASLGAILIYIWLRFEWQFSVGAVAALF 180

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            D+  T+G F++  I F+L  +AA+LT+IGYS+ND VV++DR+R+N++ Y   +  RDL+
Sbjct: 181 HDVILTIGIFSILQIRFDLPVIAAILTIIGYSINDTVVIFDRLRENLRKY-KKMPLRDLM 239

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + S+NETL R++ TS    ++++ + V GG VI  F   + +G++V   SS+++A  ++L
Sbjct: 240 NLSVNETLSRTLMTSGTTLLALIALLVLGGDVIRGFVFAITWGVIVGTYSSVYVAKNVVL 299

Query: 822 FIYDWRAKNAR 832
           F+   R  + +
Sbjct: 300 FLGVKRDWSKK 310


>gi|330446689|ref|ZP_08310341.1| export membrane protein SecF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490880|dbj|GAA04838.1| export membrane protein SecF [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 315

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 165/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L+     + FMR        S+L    SI  + T GLN+G+DF GG  + V    P 
Sbjct: 1   MRELLNADKVVDFMRWSKVAFVFSLLMIAGSIGTIATKGLNWGLDFTGGTLIEVSFKEPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L ++R +LE    GD   QNF   ++ +VRLQ +  D   +    +++           
Sbjct: 61  NLPLIRESLEKAGFGDAVVQNFGTARDVMVRLQPRD-DVKGEVLGNQIIDALKQGTAQSV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + ++I+ + +L+Y+ +RF+W  A GA+ +L  DI  T+G
Sbjct: 120 EMRRIEFVGPNVGDELAEAGGMAILIALLCILLYVSLRFEWRLAAGAVMSLAHDIIITVG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  +E +LT VAA+LT++GYS+ND +VV+DR+R+N +      S  ++++ SI++TL
Sbjct: 180 IFSLLQVEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRK-ESPAEIMNNSISQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + V GGS+I  FA+ +  GI +   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFVLGGSMIHGFALALLIGITIGTYSSIYVASALALKLGITRE 297


>gi|289523403|ref|ZP_06440257.1| protein-export membrane protein SecF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503095|gb|EFD24259.1| protein-export membrane protein SecF [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 298

 Score =  219 bits (557), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 159/297 (53%), Gaps = 7/297 (2%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I       FM+ R   +G+S+   I S+ LL T GLN+GIDF GG+   +  + P+ +
Sbjct: 1   MFIKLKSDFNFMKYRKIALGLSLCLIISSLLLLATRGLNFGIDFAGGMLFQLEFDSPLSV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S +R++LE    G    Q +      +     + GD        +++    +       +
Sbjct: 61  SEIRTSLERAGFGGAVIQLYSDRGVLIRVKSDREGDQK------KVLDSLRSSAGKDFRV 114

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              E+VGP +  +L +   +  + + +AML YI IRF+  FA+GA+  L+ D+  TLG F
Sbjct: 115 LRAEMVGPVVGSQLRKSAALATVFALLAMLAYITIRFRLRFAVGAVIALVHDVIITLGIF 174

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L   E ++  +A +LTL+GYS+ND +VV+DR+R+N+      ++F DL + SIN+ L R
Sbjct: 175 SLTFQEISMPFIAGMLTLVGYSINDTIVVFDRVRENL-KNPKGMAFVDLFNSSINQVLSR 233

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++ TS+  F  VL + +WGG  I  F++ +  GIVV   SSI+IA  +++       
Sbjct: 234 TINTSLTTFFPVLALFLWGGKAISDFSMALLVGIVVGTYSSIYIAGTVVVEWNMRSR 290


>gi|313668906|ref|YP_004049190.1| protein-export membrane protein [Neisseria lactamica ST-640]
 gi|313006368|emb|CBN87831.1| putative protein-export membrane protein [Neisseria lactamica
           020-06]
          Length = 617

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 166/506 (32%), Positives = 278/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGPDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K             +            L+  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPAKLREASEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G   
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           + +FM+V Y   G  +  ++  N++  + +LS L ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VAVFMVVYYRLMGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R   +   ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   +
Sbjct: 511 NERIREELRAGVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 84/208 (40%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +    A+ 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 VFMVVYYRL-MGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     ++ +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 41.2 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L ++   +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIALTVAVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         ++ + LK+ GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------DQTRSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|316985261|gb|EFV64212.1| protein-export membrane protein SecD [Neisseria meningitidis
           H44/76]
 gi|325133877|gb|EGC56533.1| protein-export membrane protein SecD [Neisseria meningitidis
           M13399]
 gi|325139841|gb|EGC62373.1| protein-export membrane protein SecD [Neisseria meningitidis CU385]
 gi|325200706|gb|ADY96161.1| protein-export membrane protein SecD [Neisseria meningitidis
           H44/76]
          Length = 617

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596


>gi|170718438|ref|YP_001783656.1| preprotein translocase subunit SecF [Haemophilus somnus 2336]
 gi|168826567|gb|ACA31938.1| protein-export membrane protein SecF [Haemophilus somnus 2336]
          Length = 322

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 158/307 (51%), Gaps = 5/307 (1%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +        +I       FM+ R+WG   SI+ +      +FT G N+G+DF GG  +
Sbjct: 5   TRNKKVHEYKGVILPFKLTPFMKYRYWGYAFSIIVTAVCFFFIFTKGFNWGLDFTGGTVI 64

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               ++P DL+ VRS L+   I     Q   G ++ ++RL        +   V   +K  
Sbjct: 65  DTHFSQPADLNKVRSTLKENGIESALVQTTGGVRDVMIRLPVV----ESSAEVGNKIKTI 120

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +  +     I + E VGP +  EL +  I   + + + +L YI  RF+W    GA+  L 
Sbjct: 121 LNSLDEGLEIHSIEFVGPNVGEELTQGAIYATLATLLMLLGYIAFRFEWRLGTGAVIALA 180

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            D+  TLG F+ F IE +LT VAA+L+++GYS+ND +VV+DR+R+N +     I   ++I
Sbjct: 181 HDVIVTLGVFSYFQIEMDLTFVAAILSVVGYSLNDSIVVFDRVRENFRKI-RRIDTVEII 239

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           D S+ +TL R++ TS+     V+ +  +GG  I SF++ +  GI     S+I+IA  + L
Sbjct: 240 DISLTQTLARTLMTSITTLFVVIALFAFGGPTIHSFSLALLIGIAFGTYSTIYIAITLAL 299

Query: 822 FIYDWRA 828
            +   R 
Sbjct: 300 DLGLKRE 306


>gi|84502988|ref|ZP_01001090.1| protein-export membrane protein SecF [Oceanicola batsensis
           HTCC2597]
 gi|84388733|gb|EAQ01604.1| protein-export membrane protein SecF [Oceanicola batsensis
           HTCC2597]
          Length = 322

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 116/305 (38%), Positives = 181/305 (59%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+PD   I F R     V +S L  + S+      GLN+GIDF+GG  +   + +P
Sbjct: 1   MRLKLVPDETKIDFFRRSRLFVLLSALLIVASVGATLVMGLNFGIDFRGGTTIRTESAQP 60

Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD+   R  +  L +GD              +   +VR+Q Q G+     +V+  V+  +
Sbjct: 61  VDIGAYRDAIGDLGLGDITITEVFDPTFGADQNVAMVRIQAQEGEESVSAQVVADVEAAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +VP     + E VGPK+S ELI+  ++ V+++ +A+L YIW+RF+W FA+GA+  L+ 
Sbjct: 121 QGVVPDIRFVSVESVGPKVSGELIQTAVIAVVLAIMAVLFYIWLRFEWQFAVGAVAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           DI  T+G F++F I F+L  +AA+LT++GYS+ND VVV+DR+R+N++ +   +  +DL++
Sbjct: 181 DIVLTIGVFSVFQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKF-KQMPLKDLLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINETL R+V TS    I+++ + V GG VI  F   M +GI+V   SS+FIA+ ILL 
Sbjct: 240 VSINETLSRTVMTSGTTLIALIALIVLGGDVIRGFVFAMTWGIIVGTYSSVFIASAILLR 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|325135797|gb|EGC58409.1| protein-export membrane protein SecD [Neisseria meningitidis M0579]
          Length = 617

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 164/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM++ Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVIYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ I ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVIYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + L+  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|308388793|gb|ADO31113.1| putative protein-export membrane protein [Neisseria meningitidis
           alpha710]
 gi|325129755|gb|EGC52564.1| protein-export membrane protein SecD [Neisseria meningitidis
           OX99.30304]
          Length = 617

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + L+  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|16759386|ref|NP_455003.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16763788|ref|NP_459403.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|29142843|ref|NP_806185.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62179020|ref|YP_215437.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161615407|ref|YP_001589372.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161936226|ref|YP_151512.2| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|167551784|ref|ZP_02345537.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167992255|ref|ZP_02573353.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168232379|ref|ZP_02657437.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237520|ref|ZP_02662578.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168240228|ref|ZP_02665160.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261162|ref|ZP_02683135.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465495|ref|ZP_02699377.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168818984|ref|ZP_02830984.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194443856|ref|YP_002039650.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194447677|ref|YP_002044442.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194472025|ref|ZP_03078009.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194738306|ref|YP_002113441.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250831|ref|YP_002145391.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197266031|ref|ZP_03166105.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198246035|ref|YP_002214362.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200389608|ref|ZP_03216219.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204926969|ref|ZP_03218171.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205351720|ref|YP_002225521.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207855890|ref|YP_002242541.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213163216|ref|ZP_03348926.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427842|ref|ZP_03360592.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|224582245|ref|YP_002636043.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911457|ref|ZP_04655294.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289825051|ref|ZP_06544403.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25306314|pir||AH0552 protein-export membrane protein SecF [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16418912|gb|AAL19362.1| preprotein translocase, IISP family, membrane subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|16501677|emb|CAD08864.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138475|gb|AAO70045.1| export membrane protein SecF [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62126653|gb|AAX64356.1| preprotein translocase, IISP family, membrane subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|161364771|gb|ABX68539.1| hypothetical protein SPAB_03178 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194402519|gb|ACF62741.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194405981|gb|ACF66200.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194458389|gb|EDX47228.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713808|gb|ACF93029.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195631641|gb|EDX50161.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197214534|gb|ACH51931.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197244286|gb|EDY26906.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289511|gb|EDY28874.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940551|gb|ACH77884.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602053|gb|EDZ00599.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204323634|gb|EDZ08829.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205271501|emb|CAR36319.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205323440|gb|EDZ11279.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205329545|gb|EDZ16309.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333410|gb|EDZ20174.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340136|gb|EDZ26900.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344003|gb|EDZ30767.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349782|gb|EDZ36413.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206707693|emb|CAR31977.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224466772|gb|ACN44602.1| protein export protein SecF [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261245691|emb|CBG23487.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992118|gb|ACY87003.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157020|emb|CBW16503.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|320084684|emb|CBY94475.1| Protein-export membrane protein secF [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225133|gb|EFX50194.1| Protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322713479|gb|EFZ05050.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|332987356|gb|AEF06339.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 323

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  FW  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    ++V         
Sbjct: 65  PAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++++ I++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|194290676|ref|YP_002006583.1| preprotein translocase subunit SecF [Cupriavidus taiwanensis LMG
           19424]
 gi|193224511|emb|CAQ70522.1| Protein-export membrane protein [Cupriavidus taiwanensis LMG 19424]
          Length = 323

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 158/305 (51%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS L    ++  L+  GL+  I+F GG  + V   +  D
Sbjct: 1   MEFFRIRRDIPFMKHALIFNVISFLTFAAAVFFLWQKGLHLSIEFTGGTVMEVSYQQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ---PGDSVAQTRVLEMVKKKITEIVP 647
           L  +R  +  L   D+  QNF   ++ ++RL  Q    G      +  E V   +T   P
Sbjct: 61  LEKIRGQVSKLGYTDVQVQNFGTSRDVMIRLPLQKGPDGKPATSAQQSEQVMGALTAASP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G++ ++   I ++IY+  RF+W FA+  I   + DI   
Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLCVIIGIVIYLSFRFEWKFAVAGIIANLHDIVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AA+L ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAAILAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TMSRTIITHGSTEMMVLSMFFFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|126668570|ref|ZP_01739524.1| protein-export membrane protein SecF [Marinobacter sp. ELB17]
 gi|126626975|gb|EAZ97618.1| protein-export membrane protein SecF [Marinobacter sp. ELB17]
          Length = 317

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/289 (31%), Positives = 156/289 (53%), Gaps = 6/289 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM  R     +SI   + +I LL   GLN+G+DF GG  +     +   L  +R+ L 
Sbjct: 9   FDFMGFRKIATILSITLLVLAIGLLAVRGLNFGMDFTGGTSVEFEYQQAPALPEIRTALS 68

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                    QNF  +K  LVRL     D      + + +   +T       + ++E +G 
Sbjct: 69  DAGYEQFVVQNFGSDKTVLVRLSESGNDM-----LAQEITSTLTAGGAELKLISSEFIGS 123

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  EL     +G++I+ + +LIY+ +RF++ F + A+  L  D+   LG F+LF   F+
Sbjct: 124 QVGEELKEDSGLGMLIALLVVLIYVGMRFQFKFGIAAVLPLAHDVIIVLGIFSLFQWTFD 183

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AA+L +IGYS+ND +VV DR+R+N +      S+ ++I+ SI++T+ R++ TS   
Sbjct: 184 LTVLAALLAIIGYSLNDTIVVADRIRENFRTMRVGDSW-EVINTSIHQTISRTINTSGTT 242

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + ++ + V+GG  I  FA+ +  G+VV   SSI+++A +L+ +   R 
Sbjct: 243 LVVLIALYVFGGEAINGFALALIIGVVVGTYSSIYVSANLLIALGVSRE 291


>gi|268592076|ref|ZP_06126297.1| protein-export membrane protein SecF [Providencia rettgeri DSM
           1131]
 gi|291312471|gb|EFE52924.1| protein-export membrane protein SecF [Providencia rettgeri DSM
           1131]
          Length = 322

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 164/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR       ISI+  I S  ++   G N+G+DF GG  + +  ++
Sbjct: 5   YTVEQLNYGRKVYDFMRWDNVAFSISIVLLIASFVIIGVKGFNWGLDFTGGTVIEINLSQ 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R +L +    D   QNF   ++ ++R+    G    Q    E++      +  
Sbjct: 65  PADLDKIRDSLSNSNHKDPLIQNFGSSRDIMIRIPPIEGT-AGQEVGKEIITIINQSVDD 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  EL + G + ++ + I +LIY+  RF+W  A GA+ +L  D+  T
Sbjct: 124 KATVKRIEFVGPSVGAELAQTGALALLTALICILIYVGFRFEWRLAAGAVLSLAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE ++T VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 LGILSLFHIEIDMTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLLVVLMLYLFGGAMLEGFSLVMLIGVTIGTISSIYVASALALKMGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|156935042|ref|YP_001438958.1| preprotein translocase subunit SecF [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533296|gb|ABU78122.1| hypothetical protein ESA_02893 [Cronobacter sakazakii ATCC BAA-894]
          Length = 323

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 165/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W   IS L  + SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFAISGLLLVASIVVMGVRGFNWGLDFTGGTVIEIGLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL V+R +L      +   QNF   ++ +VR+    G++  Q    ++V         
Sbjct: 65  PADLDVMRESLVKAGFEEPLLQNFGSSRDIMVRMPPAQGETGGQALGTKVVNVINQATGQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++++ +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQAGAMALLVALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 MGVLSLFQIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG+++  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLQRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|89094742|ref|ZP_01167677.1| protein-export membrane protein SecD [Oceanospirillum sp. MED92]
 gi|89080996|gb|EAR60233.1| protein-export membrane protein SecD [Oceanospirillum sp. MED92]
          Length = 617

 Score =  219 bits (557), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 157/523 (30%), Positives = 269/523 (51%), Gaps = 37/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H +LEVD    V+  L+ Y+ E++  L++E +
Sbjct: 105 NLAPTTPDWLTSIGAGPMKLGLDLRGGVHFLLEVDLPKAVSQKLENYASEIKGRLREEKL 164

Query: 87  GVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +       + + F     ++     +    Q                        I
Sbjct: 165 RYRKLETMEDGSLAVKFPKQEVRDQAVSLLRGEYQEFLLSAED--------RDGAFYAVI 216

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            L++  +  + ++AI+Q++  +R R++++G++E  +QR G +RI++QLPG QD +  +++
Sbjct: 217 TLTEQAVRDIETYAIKQNLTTLRNRVNELGVAEPLVQRQGRNRIVVQLPGIQDTAAAKKI 276

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G TA + F               V   R   G +  +E  V I G +++ A A+FD   
Sbjct: 277 IGKTATLEFRLEA-RPGASSARTEVYEFRSELGRKATLEKDVIIKGDNVSNAQASFDENG 335

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL-----------------------AVVLDGRV 302
            +P V+I+ D  G       T+D + + +                        V    + 
Sbjct: 336 -QPQVNITLDSKGGELMARTTKDAVQRRMAVLFVEDKERTVHKTVDGEPVVEKVRYTEKK 394

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +    Q++   + +I+G      +  LA +LRAG+L   +  VEER VG  LG+ +I 
Sbjct: 395 IISLATIQSVLGSQFRITGLDGAGESSELALLLRAGALAAPIYFVEERTVGPSLGAQNIE 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G  ++  GL L++LFMI+ Y  +GL+A+ ++ LN++L +A++S+L ATLTLP IAGIVL
Sbjct: 455 TGVTSVQIGLALVLLFMILYYRVFGLLANVALSLNLMLLVAVMSMLSATLTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+  RI+EE +       ++  GF  A +TIFD+NIT L+A V+LF  G 
Sbjct: 515 TVGMAVDANVLIFSRIKEELKNGLPPQSAIHAGFKGATTTIFDANITTLLAAVILFAMGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFA+T+ + IL SMFTAI + RA++      +++  + I
Sbjct: 575 GPVKGFAVTLSVGILTSMFTAILVTRALVNLTYGGRQVTKLSI 617



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 92/247 (37%), Gaps = 7/247 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               ++ VD   V   +   +   IS            R+    G   +    L +    
Sbjct: 372 ERTVHKTVDGEPVVEKVRYTEKKIISLATIQSVLGSQFRITGLDGAGESSELALLLRAGA 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +              VGP +  + I  G+  V I    +L+++ + ++  F L A   L 
Sbjct: 432 LAAP---IYFVEERTVGPSLGAQNIETGVTSVQIGLALVLLFMILYYRV-FGLLANVALS 487

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   +   ++      L  +A ++  +G +V+  V+++ R+++ +K     +  +  I
Sbjct: 488 LNLMLLVAVMSMLSATLTLPGIAGIVLTVGMAVDANVLIFSRIKEELK---NGLPPQSAI 544

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                         ++   ++ + +   G   +  FA+ ++ GI+ +  ++I +   ++ 
Sbjct: 545 HAGFKGATTTIFDANITTLLAAVILFAMGTGPVKGFAVTLSVGILTSMFTAILVTRALVN 604

Query: 822 FIYDWRA 828
             Y  R 
Sbjct: 605 LTYGGRQ 611


>gi|240013497|ref|ZP_04720410.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae DGI18]
 gi|240120569|ref|ZP_04733531.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID24-1]
          Length = 617

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 278/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K             +            L+  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|237739617|ref|ZP_04570098.1| protein translocase subunit secf [Fusobacterium sp. 2_1_31]
 gi|229423225|gb|EEO38272.1| protein translocase subunit secf [Fusobacterium sp. 2_1_31]
          Length = 318

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/297 (29%), Positives = 159/297 (53%), Gaps = 3/297 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSVV 594
             + +  +R   + + +SI+  + SI + F  GLNYGIDF GG    +   ++ V L+ +
Sbjct: 1   MKVNLHIIRKMKYYLSVSIILVVLSIIVFFAKGLNYGIDFTGGNLFQLKYNDKKVTLTEI 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             NL+ L        +   +                +    + V   + E+   +     
Sbjct: 61  NDNLDKLSEKLPQVNSNSRKVQISEDGTVILRVPELKEEDKKEVLNSLQELGAFNL-DKE 119

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           + VG  I  +L +  I  + I AI +++YI +RF++ FA+G I +L+ DI   +GF AL 
Sbjct: 120 DKVGASIGDDLKKSAIYSLGIGAILIVLYITLRFEFSFAIGGILSLLHDIIIAVGFIALM 179

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSV 773
           G E +   +AA+LT++GYS+ND +V+YDR+R+N+ + +T + +  D +D+S+N+T  RS+
Sbjct: 180 GYEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRRHTKNWTLEDCMDESVNQTAIRSL 239

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            TS+    SV+ + ++GG+ + +F + +  GI+    SSIFIA PI+  +   +  N
Sbjct: 240 NTSITTLFSVIALLIFGGASLKTFIMTLLIGILAGTYSSIFIATPIVYILNKRKGNN 296


>gi|90579384|ref|ZP_01235194.1| protein export protein SecD [Vibrio angustum S14]
 gi|90440217|gb|EAS65398.1| protein export protein SecD [Vibrio angustum S14]
          Length = 617

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 157/536 (29%), Positives = 288/536 (53%), Gaps = 42/536 (7%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  + P++L                + LGLDLRGG H ++EVD D  ++  L   
Sbjct: 100 VVALNLAASTPSWLESIGAS---------PMKLGLDLRGGVHFLMEVDMDAAMDKLLGQQ 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            +  R+ L++E I   ++ + ++ + +   D    E          +    KL+ D    
Sbjct: 151 EETFRTELREEKIRYRAISKTKDSVQVRLRDEAQLEQA--------ELALEKLHPDMLFT 202

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                    ++   ++  + ++ ++A++Q++ I+R R++++G++E  +QR G++RI+++L
Sbjct: 203 TSKINGRYVLTAKFTEERLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQGANRIVVEL 262

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVE 248
           PG QD +R +++LG TA + F +V                G       DG   +++ +V 
Sbjct: 263 PGVQDTARAKEILGATATLEFREVDSKADLAAAAAGRVPAGSEVKMTRDGRPAVLKKRVI 322

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------ 302
           ++G H+  ++++ D    +P V+IS D  G  +    +++NIGK +A V           
Sbjct: 323 LAGSHITDSSSSADEYG-RPQVNISLDTEGGSKMTAFSKNNIGKLMATVFTEYKDSGKRT 381

Query: 303 ------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                       +      Q+      +I+G  +   A  L+ +LRAG+L   ++IVEER
Sbjct: 382 PEGKVILTKHEEVINQATIQSALGRSFRITGIDSQAEAHNLSLLLRAGALIAPISIVEER 441

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG- 409
            +G  +G  +I  G  A + G+V ++LF ++ Y  +G++A+ ++ +N++L + ++S++  
Sbjct: 442 TIGPSMGQQNIDMGVQACIWGMVAVMLFTLLYYRGFGMIANLALIMNLVLIIGIMSMIPG 501

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R+ +S   ++  G+  A+STI D+NIT
Sbjct: 502 ATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIQQGYGNAFSTIADANIT 561

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            LI  ++LF  G GA++GFA+T+ + IL SMFTAI   RA++  I   K++  + I
Sbjct: 562 TLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNLIYGGKRVDKLSI 617



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 82/174 (47%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP + ++ I  G+   I   +A++++  + ++  F + A   LI+++   +G  ++  
Sbjct: 442 TIGPSMGQQNIDMGVQACIWGMVAVMLFTLLYYR-GFGMIANLALIMNLVLIIGIMSMIP 500

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R+R+ ++      S +  I +           
Sbjct: 501 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQGYGNAFSTIAD 557

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     ++  IY  + 
Sbjct: 558 ANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNLIYGGKR 611



 Score = 42.8 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 79/290 (27%), Gaps = 39/290 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++      IGLL ALPN   +    +   A              G+ + +   
Sbjct: 4   RYPLWKNLMVLFALIIGLLYALPNVYGEDPAIQITGAR-------------GASVNM--- 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                        D +   LKK  I   S    +  + + F D+  + +  D        
Sbjct: 48  ----------SALDTVTEDLKKNKIPYKSAVFEKGSVLVRFNDTDTQISARDI------- 90

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               LN +   + +V       +    ++     +   ++    +    + ++ +  +  
Sbjct: 91  ----LNSELGDDYVVALNLAASTPSWLESIGASPMKLGLDLRGGV--HFLMEVDMDAAMD 144

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + LG      +    ++  R R +  T   +          ++  +   +   D      
Sbjct: 145 KLLGQQEETFRTELREEKIRYRAISKTKDSVQVRLRDEAQLEQAELALEKLHPDMLFTTS 204

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
            +  +  ++                   + I  + +      E      G
Sbjct: 205 KINGRYVLTAKFTEERLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQG 254


>gi|82542897|ref|YP_406844.1| preprotein translocase subunit SecF [Shigella boydii Sb227]
 gi|81244308|gb|ABB65016.1| SecF [Shigella boydii Sb227]
 gi|332098504|gb|EGJ03470.1| protein-export membrane protein SecF [Shigella boydii 3594-74]
          Length = 323

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    +++K        
Sbjct: 65  PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLTQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|126736000|ref|ZP_01751744.1| protein-export membrane protein SecF [Roseobacter sp. CCS2]
 gi|126714557|gb|EBA11424.1| protein-export membrane protein SecF [Roseobacter sp. CCS2]
          Length = 297

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 104/282 (36%), Positives = 171/282 (60%), Gaps = 7/282 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG--- 613
            + +       GLN+GIDF GG  +   +  PVD+   R+ LE+L++GDIS    +    
Sbjct: 4   MVIAFASFLIQGLNFGIDFTGGTSIRTDSAIPVDVGAYRAALETLELGDISIAEVNDVLF 63

Query: 614 ---EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
              +   LVR+Q Q GD    +  +E ++  +  I P     + E VGPK+S ELI+  I
Sbjct: 64  DEDQHVALVRVQAQEGDERIASETIEAIQSALRTIDPDMAFPSVESVGPKVSGELIQTSI 123

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + V ++ IA+L+YIW+RF+W FA+GA+  L  D+  T+G F+   I+F+L  +AA+LT++
Sbjct: 124 IAVALAVIAILLYIWLRFEWQFAVGAVLALSHDVILTIGIFSELQIKFDLAIIAALLTIV 183

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           GYS+ND V+V+DR+R+N++ Y      +++++ SINETL R++ TS+   +++L +   G
Sbjct: 184 GYSINDTVIVFDRVRENLRKYKKK-DLKEVLNVSINETLSRTLMTSVTTMLALLALFTLG 242

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G VI  F   M +G+++   SSIF+A+ ILL +   R  + +
Sbjct: 243 GDVIRGFVFAMMWGVLIGTYSSIFVASAILLVLGVKRDWSKK 284


>gi|157828026|ref|YP_001494268.1| preprotein translocase subunit SecF [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165932724|ref|YP_001649513.1| preprotein translocase subunit SecF [Rickettsia rickettsii str.
           Iowa]
 gi|166977545|sp|A8GQT5|SECF_RICRS RecName: Full=Protein-export membrane protein secF
 gi|27312011|gb|AAO00969.1| protein export membrane protein [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157800507|gb|ABV75760.1| preprotein translocase subunit SecF [Rickettsia rickettsii str.
           'Sheila Smith']
 gi|165907811|gb|ABY72107.1| protein translocase subunit [Rickettsia rickettsii str. Iowa]
          Length = 308

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 174/306 (56%), Gaps = 2/306 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+P+ I   FM  +      SI+ S+ S   +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R  L  L IG++  QNF  E++  +R      +      +  +     +  
Sbjct: 61  DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSNSEENLMKNIELIKGSLQSNF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S +A+++YIW+RF+WYF  G +  L+ D+ 
Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGFGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ SI
Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF+I + FGI+V   SSIFI+APIL    +
Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSILVFFGIIVGTYSSIFISAPILTMFVN 298

Query: 826 WRAKNA 831
            +    
Sbjct: 299 RKFNKK 304


>gi|319778542|ref|YP_004129455.1| Protein-export membrane protein SecD [Taylorella equigenitalis
           MCE9]
 gi|317108566|gb|ADU91312.1| Protein-export membrane protein SecD [Taylorella equigenitalis
           MCE9]
          Length = 629

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 183/520 (35%), Positives = 289/520 (55%), Gaps = 28/520 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL A P++L              N ++LGLDLRGG H +L+VD    +       
Sbjct: 109 VVALNLLSATPSWLQSLGA---------NPMALGLDLRGGVHFLLQVDMKGALKSRYNSL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ELR+  +   I   S++   + IT  F++ +      D +   L         +    
Sbjct: 160 NTELRTLFRDSKITAESIQLEGSTITALFSNEKDANKAKDVIRQRL--------PELTTQ 211

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                 +  ++  ++ N + +V   A++Q++  +  RI+++G++E  IQ+ G+ RI++QL
Sbjct: 212 YAEQNGKHVLTSTIAPNEVSRVQDTALKQNIVTLHNRINELGVAEPIIQQQGNDRIVVQL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSK------KGFMFGVRFLRDSDGNQYLVEDKV 247
           PG QD ++ + +LG TA +    V  + +           FG+   + +DG   L+  +V
Sbjct: 272 PGVQDIAKAKDILGRTATLELRLVDDSPTALASLASGVVPFGLEKFKGTDGRDILLRRQV 331

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVL 303
            ++G +L  A A  DP  + P V++S D  G+R F +VTRDNI K +         G+V+
Sbjct: 332 ILTGENLEDAQAGLDPNDNSPAVNLSLDSKGSRIFRDVTRDNINKRMAIVLFEKGKGQVV 391

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           T+P I   IP+G+  ISG+ T   A  +A +LRAGSL   ++I+EER +G  LG D+I K
Sbjct: 392 TSPTIRSEIPNGQVMISGHMTSTEAADIALLLRAGSLAAPMSIIEERTIGPSLGEDNIKK 451

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  +   G VLI LFMI+ Y   G+ +   +  NV+L LA+LSL+ ATLTLP IA I L 
Sbjct: 452 GFRSTWVGFVLIALFMILYYRLIGVFSTLGLAFNVLLLLAVLSLIQATLTLPGIAAIALT 511

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF-FFGG 482
           +G+A+D+N+L+NERIREE R+  +   ++++GF +A++TIFDSNIT+LI  + L  F G 
Sbjct: 512 LGMAIDANVLINERIREELREGVNPQQAINIGFEKAWATIFDSNITSLIVGIALLAFSGP 571

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G +RGFA+   L IL SMF+A+  VRA++      KK   
Sbjct: 572 GPIRGFAVVHVLGILTSMFSAVVGVRALVNLWYGRKKKLK 611



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 85/214 (39%), Gaps = 5/214 (2%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G   +       +  +   +    +I     +GP +  + I+KG     +  + +
Sbjct: 404 QVMISGHMTSTEAADIALLLRAGSLAAPMSIIEERTIGPSLGEDNIKKGFRSTWVGFVLI 463

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            +++ + ++    + +   L  ++   L   +L      L  +AA+   +G +++  V++
Sbjct: 464 ALFMILYYRLI-GVFSTLGLAFNVLLLLAVLSLIQATLTLPGIAAIALTLGMAIDANVLI 522

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG-SVIGSFAI 799
            +R+R+ ++     ++ +  I+    +       +++ + I  + +  + G   I  FA+
Sbjct: 523 NERIREELRE---GVNPQQAINIGFEKAWATIFDSNITSLIVGIALLAFSGPGPIRGFAV 579

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               GI+ +  S++     ++   Y  + K   I
Sbjct: 580 VHVLGILTSMFSAVVGVRALVNLWYGRKKKLKNI 613



 Score = 43.5 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/124 (12%), Positives = 29/124 (23%), Gaps = 29/124 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +    GL   LPN                           G  + +++ 
Sbjct: 3   RYPLWKYLIVLVALIFGLTYTLPNIF-------------------------GQTVAVQIS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI----QNKITLSFADSRFKENIADKVTL 117
             +                LK+  I   + +       N I + F     +      +  
Sbjct: 38  SLNVTKKVDANLLSFAEQTLKQANIPFENSQIQANGPNNTIRIRFNSPNEQIQARGILER 97

Query: 118 FLQG 121
            L  
Sbjct: 98  ALNP 101


>gi|301154788|emb|CBW14251.1| SecYEG protein translocase auxillary subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 324

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 152/309 (49%), Gaps = 5/309 (1%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                        +       +FM+ RF G   SI+    S+  + T G N+G+DF GG+
Sbjct: 6   KDKNGHFIREVNGIKLPFPLTEFMKVRFVGYTFSIILMAISLFFIVTKGFNWGLDFTGGV 65

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                 ++P DL  +R  L    I     Q     ++ ++RL          + + + VK
Sbjct: 66  VFDTHFSQPADLEKIRGTLNQNGIASPIVQTTGSVQDVMIRLPA----DNNDSAIGDHVK 121

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  I P   I + E VGP +  EL +  +   + +   MLIY+  RF+W    G I +
Sbjct: 122 SMLQTIDPNIHINSIEFVGPNVGEELAQGAVYATLATLAMMLIYVGSRFEWRLGFGGIAS 181

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  D+  TLG F+   +E +LT VAA+L+++GYS+ND +VV+DR+R+N +      +  D
Sbjct: 182 LAHDVVITLGVFSALQVEMDLTFVAAILSVVGYSINDSIVVFDRVRENFRKIRRVETI-D 240

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +ID S+ +TL R++ TS+   + V+ +  +GG  I +F++ +  GI     SSIFIA  I
Sbjct: 241 IIDISLTQTLSRTIMTSLTTLLVVIALFFFGGPSIHNFSLALLIGIGFGTYSSIFIAIAI 300

Query: 820 LLFIYDWRA 828
              I   R 
Sbjct: 301 AYDIGLRRE 309


>gi|283784227|ref|YP_003364092.1| protein-export protein [Citrobacter rodentium ICC168]
 gi|282947681|emb|CBG87236.1| protein-export protein [Citrobacter rodentium ICC168]
          Length = 323

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  + SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVWDFMRWDYWAFGISGLLLVASIVVMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  LE     D   QNF    + +VR+    G +  Q    +++         
Sbjct: 65  PAEMDVMREALEKAGFVDPLLQNFGSSHDIMVRMPPTEGANGGQVLGSKVLSVINESTNQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + I++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALLAALISILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLFLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|330993543|ref|ZP_08317478.1| Protein-export membrane protein secD [Gluconacetobacter sp. SXCC-1]
 gi|329759573|gb|EGG76082.1| Protein-export membrane protein secD [Gluconacetobacter sp. SXCC-1]
          Length = 516

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 197/529 (37%), Positives = 310/529 (58%), Gaps = 20/529 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M  +   +     +C IGL + LPN + Q +       +P  +I LGLDLRGGS+L+L+V
Sbjct: 2   MYYSRLRMASVIGVCLIGLALCLPNVIRQPVAS-----LPWRQIHLGLDLRGGSYLLLQV 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS--FADSRFKENIADKVTLF 118
           D +      L+   DE R  L K  +G  ++    + +T +    +    +         
Sbjct: 57  DMNSVAADRLRGLQDETRQTLLKNSLGYRNLATTAHGVTFTPRTPEETQPD--------- 107

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ + +     P +  +    + +I++ LS +   Q    A+ QS+EI+R+RID  G  +
Sbjct: 108 LKALRAMPMNVPGEFTVEQGGDGQITLTLSADAARQRAYDAVTQSIEIVRRRIDATGAID 167

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN---NSKKGFMFGVRFLRD 235
             I R G  RI+++LPG  DP R++ LLGTTAKM+FH V  +   +S       +  + D
Sbjct: 168 PEITRQGEDRIIVELPGISDPERVKNLLGTTAKMTFHLVADSAIGSSVPPPGVDLLPMSD 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G    V   V++ G  L  A+A+ D ++ +  V+ +FD  GA+ F +VTR N+GK  A
Sbjct: 228 GQG-TLPVFSHVDVDGADLTNASASIDQQSGEWAVNFTFDSAGAQEFGDVTRANVGKRFA 286

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD +V+ APVI  AI  G  QI+G F+ + A  +A +LRAG+LP  LN++E+R++G  
Sbjct: 287 IVLDNKVIEAPVIRTAITGGSGQITGGFSAQQATDMALLLRAGALPAPLNVIEQRSIGPS 346

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG+DSI  G  ++ AG VL++ FM + YG++G  A+ ++  N++L  A+LSL  ATLTLP
Sbjct: 347 LGADSIRAGGYSLAAGFVLVIAFMALFYGRFGWYANIALLANLVLMTAILSLFEATLTLP 406

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            +AG++L +G+AVD+NIL+NERIREE  + +S   ++  GF RA +TI DSN TAL+A V
Sbjct: 407 GMAGMLLTLGMAVDANILINERIREEVARGRSALQAMQAGFERATATIVDSNATALLAHV 466

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +LF FG G VRGFA+T+ + I+ ++FT + + R +M+      +  ++ 
Sbjct: 467 MLFVFGTGPVRGFALTITIGIVTTLFTTLLLSRMLMVRWYARTRPSTLP 515



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 91/262 (34%), Gaps = 10/262 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---- 629
              G   +    +             ++        +    +  ++R     G       
Sbjct: 254 QQSGEWAVNFTFDSAGAQEFGDVTRANVGKRFAIVLDNKVIEAPVIRTAITGGSGQITGG 313

Query: 630 --AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             AQ      +  +   +     +     +GP +  + IR G   +    + ++ ++ + 
Sbjct: 314 FSAQQATDMALLLRAGALPAPLNVIEQRSIGPSLGADSIRAGGYSLAAGFVLVIAFMALF 373

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +   F   A   L+ ++       +LF     L  +A +L  +G +V+  +++ +R+R+ 
Sbjct: 374 YG-RFGWYANIALLANLVLMTAILSLFEATLTLPGMAGMLLTLGMAVDANILINERIREE 432

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       S    +           V ++  A ++ + + V+G   +  FA+ +  GIV 
Sbjct: 433 VA---RGRSALQAMQAGFERATATIVDSNATALLAHVMLFVFGTGPVRGFALTITIGIVT 489

Query: 808 AASSSIFIAAPILLFIYDWRAK 829
              +++ ++  +++  Y     
Sbjct: 490 TLFTTLLLSRMLMVRWYARTRP 511


>gi|256828492|ref|YP_003157220.1| protein-export membrane protein SecD [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577668|gb|ACU88804.1| protein-export membrane protein SecD [Desulfomicrobium baculatum
           DSM 4028]
          Length = 531

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 190/538 (35%), Positives = 294/538 (54%), Gaps = 23/538 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M +  W  +L + +  + L+  LP+  P        + +P + I LGLDL+GG HL L V
Sbjct: 1   MGSLRWRALLAAFVIFLALIHVLPSI-PSVRNSSLGALLPGDEIGLGLDLKGGIHLTLGV 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA--DKVTLF 118
           D D  ++  +     +LR   +++ I V   R + ++  L F   + ++     + +   
Sbjct: 60  DLDAALSNAVTSIGQDLRLEAREKKILVLRPRLLDSR-RLEFTLLKQEQRAELDELLGSR 118

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
              +      D          +    + ++ + +  +    ++Q+++ IR RIDQ G++E
Sbjct: 119 FATMQIISAEDGG------NGQLRYVLGVTPDYVKYLQDLTMDQALKTIRNRIDQFGVAE 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-- 236
             I++   +RI++QLPG  DP R   ++G TA + F  V      +  + G         
Sbjct: 173 PDIRKQQGNRIIVQLPGLDDPKRAINIIGRTAHLEFKLVDDGADVQAAVAGTVPAESELA 232

Query: 237 ----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                          +++ +V ++G ++  A   F     +  V ++F+  G+R F EVT
Sbjct: 233 YMQDKRGVSEVKTPIVLKSEVVLTGEYITDANVQF-DSYGQAYVGMNFNARGSRIFEEVT 291

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
             NI K LA+VLDG V +APVI   I  G+A I+G FT E A  LA +LRAGSLP  +NI
Sbjct: 292 GANIKKRLAIVLDGTVHSAPVIQDRIGGGRASITGQFTTEEAHDLAVVLRAGSLPAPVNI 351

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +EER+VG  LG +SI KG  A + G +++V+FM + Y + GL+A F I L+V L LA L+
Sbjct: 352 LEERSVGPSLGQESIDKGMMAALIGGLMVVVFMSIYYRRAGLIAAFEIILDVFLILAGLA 411

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
             GATLTLP IAGI+L +G+AVD+N+L+ ERIREE R  +SV  +++ GFSRA  TI DS
Sbjct: 412 AFGATLTLPGIAGIILTLGMAVDANVLIYERIREELRHGESVAAAINNGFSRATQTIIDS 471

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           N+T +IA V+L+ FG G VRGFA+T+ L IL SMFTAI + R      +  ++  +  
Sbjct: 472 NVTTIIAAVILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRIFFDSWLARRQPGTQP 529



 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 84/174 (48%), Gaps = 4/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + +E I KG++  +I  + +++++ I ++    L A   +ILD+   L   A FG
Sbjct: 356 SVGPSLGQESIDKGMMAALIGGLMVVVFMSIYYR-RAGLIAAFEIILDVFLILAGLAAFG 414

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+R+ ++      S    I+   +      + +
Sbjct: 415 ATLTLPGIAGIILTLGMAVDANVLIYERIREELR---HGESVAAAINNGFSRATQTIIDS 471

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++   I+ + +  +G   +  FA+ +  GI+ +  ++IF++          R  
Sbjct: 472 NVTTIIAAVILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRIFFDSWLARRQP 525


>gi|161869539|ref|YP_001598706.1| preprotein translocase subunit SecD [Neisseria meningitidis 053442]
 gi|161595092|gb|ABX72752.1| protein-export membrane protein [Neisseria meningitidis 053442]
          Length = 617

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ +++    +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRV---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596


>gi|121535590|ref|ZP_01667397.1| protein-export membrane protein SecF [Thermosinus carboxydivorans
           Nor1]
 gi|121305830|gb|EAX46765.1| protein-export membrane protein SecF [Thermosinus carboxydivorans
           Nor1]
          Length = 303

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 89/294 (30%), Positives = 149/294 (50%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +    +  R+W   +S L  I  +  +   G N GIDF GG  L +   RPV ++ VR  
Sbjct: 1   MKFDIIGKRYWWFALSALVIIPGLVSMAVQGFNLGIDFTGGTLLDMKFARPVTVAEVRDV 60

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   + + + Q                   V        V   + + +    I   E V
Sbjct: 61  LKDYHLENSTIQLATVAAQTEASPNVFIRTQVLGEEERRAVLSGLEQKLGKFDILRIEKV 120

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  I  EL R+ ++ V  +++ M++YI  RF++ FA+  I  L+ D+   LG F+L   E
Sbjct: 121 GAVIGSELTRQAVLAVAAASVLMVLYITYRFEFKFAISGIIALLHDVLVVLGVFSLLQKE 180

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + + VAA+LT+IGYS+ND +V++DR+R+N+K +  S S  +L+++SI +T+ RS+YT +
Sbjct: 181 VDASFVAAILTIIGYSINDTIVIFDRIRENLKTHRKSESLAELVNRSIWQTMTRSIYTVL 240

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               + L +  +GG    +FA+ +  GI   A SSIF A+PI +   +   +  
Sbjct: 241 TVLFAALSLYFFGGETTKNFALALIIGITSGAYSSIFNASPIWVTWKEIEERRR 294


>gi|262371657|ref|ZP_06064936.1| protein-export membrane protein SecD [Acinetobacter junii SH205]
 gi|262311682|gb|EEY92767.1| protein-export membrane protein SecD [Acinetobacter junii SH205]
          Length = 633

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 158/535 (29%), Positives = 275/535 (51%), Gaps = 50/535 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDLRGG H +LEVD D  ++  ++  + +LR   +   I
Sbjct: 103 NLAPTTPEWLQKIGAKPMKLGLDLRGGVHFLLEVDMDKAISQRMETSATDLRRQFRDNKI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++    N IT+ FA++  ++  AD +                +  L +T    + + 
Sbjct: 163 KFNNLALNNNTITVQFANTTDRDAAADFLRRNGNEF--------TQQALASTDGALLKLN 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +     ++ S+A+ Q++  +R RI+++G++E+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 215 YTDVGRQEIQSYAVNQNLTTLRNRINELGVAEALVQTQGSNRIVVELPGVQDTAEAKRVL 274

Query: 207 GTTAKMSFHKVLPNN--------------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           G TA + F  V  +N                        +     G Q L+     ++G 
Sbjct: 275 GRTANLEFRLVADSNDQYIDPYTGKYNGQPLPPGTELFAYESLDSGRQLLLNRNRILTGE 334

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            +  A++ F   +    V+I+ D  G +   + TR+ +GK +                  
Sbjct: 335 RVQNASSGFSQDSGGAEVNITLDTAGGKLMADATRNAVGKRMAVLFIENKQKISYVTDPA 394

Query: 295 -------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                         V+      QA+   + +I+G  + + A  LA MLRAG+L   +  V
Sbjct: 395 TGTQTEVRTPYTESVVINAATIQAVLGSQFRITGLDSPQEAAELALMLRAGALAAPMYFV 454

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER VG  LG ++I  G  +   G +L+ ++M+V +  +G++A+F++  N+ + L ++S 
Sbjct: 455 EERVVGPSLGQENIDAGVLSTQIGFILVAIWMVVFFRLFGVIANFALVFNLAMILTVMSW 514

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           LGA+LTLP IAGIV+GIG+AVD+N+L+ ERIREE     S   ++  G+ RAY+TIFDSN
Sbjct: 515 LGASLTLPGIAGIVIGIGMAVDANVLICERIREEMLWGASPKQAIVAGYDRAYNTIFDSN 574

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +T  I   +LF  G G ++GFA+T+ + I+ SMFTAI++ RA++  I   ++  +
Sbjct: 575 LTTFIVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLIYGKRRNLT 629



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 91/245 (37%), Gaps = 4/245 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            D +            +    N    +  L       G    Q      +  +   +   
Sbjct: 391 TDPATGTQTEVRTPYTESVVINAATIQAVLGSQFRITGLDSPQEAAELALMLRAGALAAP 450

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                  +VGP + +E I  G++   I  I + I++ + F+  F + A   L+ ++   L
Sbjct: 451 MYFVEERVVGPSLGQENIDAGVLSTQIGFILVAIWMVVFFRL-FGVIANFALVFNLAMIL 509

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              +  G    L  +A ++  IG +V+  V++ +R+R+ M       S +  I    +  
Sbjct: 510 TVMSWLGASLTLPGIAGIVIGIGMAVDANVLICERIREEMLW---GASPKQAIVAGYDRA 566

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +++  FI    +   G   I  FA+ +  GIV +  ++I +   I+  IY  R 
Sbjct: 567 YNTIFDSNLTTFIVAFILFAIGTGPIKGFAVTLMIGIVCSMFTAITVTRAIVQLIYGKRR 626

Query: 829 KNARI 833
              ++
Sbjct: 627 NLTKL 631



 Score = 42.8 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 18/44 (40%)

Query: 1  MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44
          MR   W  +L  ++  I  L ALP+  P     +   A    +I
Sbjct: 1  MRYPAWKYLLILVVLVISTLYALPSLYPDEPAVQISGAKAGTQI 44


>gi|237808772|ref|YP_002893212.1| protein-export membrane protein SecF [Tolumonas auensis DSM 9187]
 gi|237501033|gb|ACQ93626.1| protein-export membrane protein SecF [Tolumonas auensis DSM 9187]
          Length = 314

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 163/299 (54%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F L+     I FMR        S +  + SI  + T G N+G+DF GG    +  ++P 
Sbjct: 1   MFQLLKPGHTIPFMRLALPSTIFSCILILLSIFTIATKGFNWGLDFTGGTIAELKFSKPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL VVRS L    +     Q +   K+ ++R+   P   + Q ++ + V+K  +EI    
Sbjct: 61  DLDVVRSALNKQGLEGAVVQYYGSTKDVVIRI--APKGELTQQKITDGVQKGASEIDSSV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            +   E VGP +  EL  +G + ++ +   +L+Y+ +RF+W  A GA+ +L  DI  TL 
Sbjct: 119 NLSRIEYVGPSVGEELANQGFLAILAALGCILVYVALRFEWRMATGAVLSLAHDILITLA 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+   +EF+L  +AAVLT++GYS+ND +VV+DR+R+N +    + + R++ID S+ ETL
Sbjct: 179 VFSWTQMEFDLNVLAAVLTVVGYSLNDTIVVFDRVRENARRI-RNETMRNIIDISMTETL 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS    I+V+ +   GG +I  F+  +  GI     SSI++A+   +++   R 
Sbjct: 238 SRTLITSGTTLITVIALFWKGGPMIHGFSTALLIGIGFGTYSSIYVASAWAMYLKMSRE 296


>gi|58040824|ref|YP_192788.1| protein-export membrane protein [Gluconobacter oxydans 621H]
 gi|58003238|gb|AAW62132.1| Protein-export membrane protein [Gluconobacter oxydans 621H]
          Length = 312

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 126/305 (41%), Positives = 186/305 (60%), Gaps = 3/305 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
           F  + D   I FMR R  G+ +S + SI S+ L F  GL  G+DF+GGI +      P D
Sbjct: 7   FRFVRDDRRINFMRGRHMGLIVSAVLSIASVILFFQPGLKLGLDFRGGIIVEAQTPGPAD 66

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP--GDSVAQTRVLEMVKKKITEIVPL 648
              +R+ L+   I   + Q F   ++  + +             ++++ VK  I+   P 
Sbjct: 67  FGKLRAALDHAGIHPDAVQAFGSPRDVRISINAPEGADREAQTQKLVDGVKSAISAAEPG 126

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           + +   + VG  +S EL R G++ +  S   +LIYIW+RF+  FA+ A+ TLILD+TKT+
Sbjct: 127 TQVLRADAVGASVSSELFRDGLLALGFSLAMILIYIWVRFEREFAISAVVTLILDLTKTV 186

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           GF A+   EF+L  VAA+LT++GYS NDKVVVYDR+R+N++ Y T +  R+L+D SINET
Sbjct: 187 GFLAITRFEFDLVMVAALLTILGYSTNDKVVVYDRIRENLRKYRT-MPLRELLDLSINET 245

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TSM  F++ LP+A++GGS +  FA  M FGIVV  SSSIFIAAP+LL + + R 
Sbjct: 246 LNRTLGTSMTVFLAALPLALFGGSTLTGFATVMLFGIVVGTSSSIFIAAPLLLLMGEKRL 305

Query: 829 KNARI 833
           +   +
Sbjct: 306 RKEAV 310


>gi|209964317|ref|YP_002297232.1| protein-export membrane protein SecF, putative [Rhodospirillum
           centenum SW]
 gi|209957783|gb|ACI98419.1| protein-export membrane protein SecF, putative [Rhodospirillum
           centenum SW]
          Length = 311

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 115/301 (38%), Positives = 190/301 (63%), Gaps = 4/301 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD  AI F++ RF+G GIS++  + +I  LF+ GLN GIDF+GGI +   A +
Sbjct: 1   MKPLRLVPDNTAIDFVKWRFFGFGISLILVLITIGGLFSTGLNLGIDFRGGILIEARAQQ 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            +D + +R  L SL +G++  Q F G  + L+R+Q Q G   AQ   ++ V+  +     
Sbjct: 61  TIDSAALRQQLGSLGLGEVQLQQFGGPNDVLIRVQQQEGGDAAQNEAVQKVRTAL---GD 117

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
               +  E+VGP++  EL+R+G +  +++ +A+  Y+  RF+W F + A+     D+  T
Sbjct: 118 SYEYRRVELVGPRVGGELMRQGAIATVLAIMAIAAYVAFRFEWQFGVSALIATFHDVFVT 177

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG F +  +EF+LTAVAA+LTL GYS+ND VVV+DRMR+ M+ +  S   + +I+ S+N+
Sbjct: 178 LGLFIVLQLEFDLTAVAALLTLAGYSINDTVVVFDRMREQMRKH-KSADLKTIINMSVNQ 236

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TLGR++ TS    +++LP+ ++GGS + +F + + +GI+V   SSI++AA ILL++   R
Sbjct: 237 TLGRTILTSGTTLLAILPLLLFGGSALHNFTLALFWGILVGTFSSIYVAASILLYLPAIR 296

Query: 828 A 828
            
Sbjct: 297 R 297


>gi|329113324|ref|ZP_08242105.1| Protein-export membrane protein SecF [Acetobacter pomorum DM001]
 gi|326697149|gb|EGE48809.1| Protein-export membrane protein SecF [Acetobacter pomorum DM001]
          Length = 316

 Score =  219 bits (556), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 132/307 (42%), Positives = 192/307 (62%), Gaps = 3/307 (0%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +        +     I FMR R+ G+ +S + SI SI L F  GL  G+DF+GGI +   
Sbjct: 1   MFGRPLLRFVRKDTHINFMRGRYMGLIVSAVLSIASIILFFHPGLTLGLDFRGGIVVEAK 60

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            + P D + +R+ L +  I   S Q F    + L+RL  +  D      V++ V++ +T+
Sbjct: 61  TSGPADFAKLRTALAAQHISHASLQAFGAPDDVLIRLDAR--DDQNTDAVVDTVRRAVTD 118

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             P +TI   + VG  +S EL R G++ + +S   +L+YIW RF+W FAL A+ TL+LD+
Sbjct: 119 AQPGTTILRADAVGASVSAELFRNGMLALGLSLAMILVYIWFRFEWEFALSAVITLVLDL 178

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           TKT+GF  + G EF+L  VAA+LT++GYS NDKVVVYDR+R+N++ Y T +   +LI+ S
Sbjct: 179 TKTMGFLVITGFEFDLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRT-MPLMELINLS 237

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           INETL R++ TS   F++ LP+A+WGG+ +  FA  M FGIVV  SSSIFIAAP+LLF+ 
Sbjct: 238 INETLNRTLGTSSTVFLAALPLALWGGATLSGFAWTMLFGIVVGTSSSIFIAAPLLLFMG 297

Query: 825 DWRAKNA 831
           + R K  
Sbjct: 298 EGRLKRG 304


>gi|15892077|ref|NP_359791.1| preprotein translocase subunit SecF [Rickettsia conorii str. Malish
           7]
 gi|81528523|sp|Q92JB3|SECF_RICCN RecName: Full=Protein-export membrane protein secF
 gi|15619199|gb|AAL02692.1| protein-export membrane protein secF [Rickettsia conorii str.
           Malish 7]
          Length = 308

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+P+ I   FM  +      SI+ S+ S   +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R  L  L IG++  QNF  E++  +R      +      +  +     +  
Sbjct: 61  DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKGFLQSNF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S +A+++YIW+RF+WYF LG +  L+ D+ 
Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ SI
Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    +
Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298

Query: 826 WRAKNA 831
            +    
Sbjct: 299 RKFNKK 304


>gi|325577685|ref|ZP_08147960.1| protein-export membrane protein SecF [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160430|gb|EGC72556.1| protein-export membrane protein SecF [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 324

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 152/309 (49%), Gaps = 5/309 (1%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                        +       +FM+ RF G   SI+    S+  + T G N+G+DF GG+
Sbjct: 6   KDKNGHFIREVNGIKLPFPLTEFMKVRFVGYTFSIILMAISLFFIVTKGFNWGLDFTGGV 65

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                 ++P DL  +R  L    I     Q     ++ ++RL          + + + VK
Sbjct: 66  VFDTHFSQPADLEKIRGTLNQNGIASPIVQTTGSVQDVMIRLPA----DNNDSAIGDHVK 121

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  I P   I + E VGP +  EL +  +   + +   MLIY+  RF+W    G I +
Sbjct: 122 SMLQTIDPNIHINSIEFVGPNVGEELAQGAVYATLATLAMMLIYVGSRFEWRLGFGGIAS 181

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  D+  TLG F+   +E +LT VAA+L+++GYS+ND +VV+DR+R+N +      +  D
Sbjct: 182 LAHDVVITLGVFSALQVEMDLTFVAAILSVVGYSINDSIVVFDRVRENFRKIRRVETI-D 240

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +ID S+ +TL R++ TS+   + V+ +  +GG  I +F++ +  GI     SSIFIA  I
Sbjct: 241 IIDISLTQTLSRTIMTSLTTLLVVIALFFFGGPSIHNFSLALLIGIGFGTYSSIFIAIAI 300

Query: 820 LLFIYDWRA 828
              I   R 
Sbjct: 301 AYDIGLRRE 309


>gi|153951817|ref|YP_001397795.1| preprotein translocase subunit SecF [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939263|gb|ABS44004.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 323

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 156/285 (54%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR RF  + +S +    SI LL+  GL YGIDF GG  + +       ++ +R  LE
Sbjct: 10  YNFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                        G    +       G +   +  +      + +      ++  ++VGP
Sbjct: 70  KQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ + +S IA+LIYI +RF+W FAL AI + I D+  TLG  +LF I+ N
Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVLT++GYS+ND ++++DR+R+ +K  +       +I++S++ TL R+V TS   
Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSRTVLTSGLT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +V+ +  +GG +I  F++ +  GI+    SSIF+A+PILL+  
Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPILLWFK 291


>gi|91205999|ref|YP_538354.1| preprotein translocase subunit SecF [Rickettsia bellii RML369-C]
 gi|157826637|ref|YP_001495701.1| preprotein translocase subunit SecF [Rickettsia bellii OSU 85-389]
 gi|122425282|sp|Q1RH99|SECF_RICBR RecName: Full=Protein-export membrane protein secF
 gi|166977667|sp|A8GYD9|SECF_RICB8 RecName: Full=Protein-export membrane protein secF
 gi|91069543|gb|ABE05265.1| Protein-export membrane protein secF [Rickettsia bellii RML369-C]
 gi|157801941|gb|ABV78664.1| preprotein translocase subunit SecF [Rickettsia bellii OSU 85-389]
          Length = 303

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 175/305 (57%), Gaps = 2/305 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+P+ I   FM  +      SI+ S+ S   +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGMYKFNFGIDFAGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R  L  L IG++  QNF  E++  +R      D++ +   L     +    
Sbjct: 61  DQTPDLPKMRQVLGELGIGEVVLQNFGSERDLSIRFGSSSEDNLMKNIELIKSTLQNNFP 120

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S  A++IYIW+RF+WYF LG +  L+ D+ 
Sbjct: 121 YNF-EYRKVDFVGPQVGRQLIEAGTMAMLFSFAAIMIYIWVRFEWYFGLGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y       ++I+ SI
Sbjct: 180 LALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKGITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    +
Sbjct: 239 NETLSRTILTVVTTLLANLALVLFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTIFAN 298

Query: 826 WRAKN 830
            + + 
Sbjct: 299 KKFEK 303


>gi|323976110|gb|EGB71203.1| protein-export membrane protein SecF [Escherichia coli TW10509]
          Length = 323

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 165/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    +++K        
Sbjct: 65  PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++++ +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMVALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVTIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|322614691|gb|EFY11620.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618797|gb|EFY15685.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623504|gb|EFY20343.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629198|gb|EFY25977.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631918|gb|EFY28672.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637344|gb|EFY34046.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642030|gb|EFY38640.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647849|gb|EFY44324.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652526|gb|EFY48880.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653311|gb|EFY49644.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660540|gb|EFY56776.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664692|gb|EFY60885.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669255|gb|EFY65405.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670801|gb|EFY66934.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678961|gb|EFY75016.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681989|gb|EFY78014.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685182|gb|EFY81179.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194470|gb|EFZ79665.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196994|gb|EFZ82136.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203978|gb|EFZ88995.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206936|gb|EFZ91889.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210846|gb|EFZ95718.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214536|gb|EFZ99287.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323223093|gb|EGA07436.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227043|gb|EGA11224.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230140|gb|EGA14260.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233878|gb|EGA17967.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238428|gb|EGA22486.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244116|gb|EGA28125.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246276|gb|EGA30259.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251902|gb|EGA35765.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257899|gb|EGA41578.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261088|gb|EGA44680.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264982|gb|EGA48481.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272545|gb|EGA55952.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 323

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 165/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  FW  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    ++V         
Sbjct: 65  PAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++++ I++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +      S+ ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|197116901|ref|YP_002137328.1| preprotein translocase subunit SecD [Geobacter bemidjiensis Bem]
 gi|197086261|gb|ACH37532.1| protein export membrane protein SecD [Geobacter bemidjiensis Bem]
          Length = 534

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 191/535 (35%), Positives = 286/535 (53%), Gaps = 22/535 (4%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           W + +      +  L   P  +     + +    PK++I LGLDL+GG+HLV++VD    
Sbjct: 7   WRITMIVFFVLLSFLYLTPTLVSNLP-NWWTGYFPKDKIHLGLDLQGGTHLVMKVDTQKA 65

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           V G++ + + +L   L    I +  + R  ++ I L+F D    EN A  +      +  
Sbjct: 66  VEGYIDLIASDLEDSLNVRRIRIHQINRVGEDAIRLAFYDVNSAENEAQLIKKKYPELEQ 125

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
               D +  ++       +   + +  +      A+ Q++E IR RIDQ G+ E  IQR 
Sbjct: 126 IQIRDSEGGMVH------LEFRMEKKAVQDRKDKAVAQALETIRNRIDQFGVLEPVIQRE 179

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------- 236
           G   I+IQLPG  DP R  +L+G TA++ F  V  N S                      
Sbjct: 180 GIDHIVIQLPGITDPKRAIELIGKTARLEFKLVDENLSASSSSPYAMPDDAEILMEQQSN 239

Query: 237 ------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                  G   +V+ K  I+G  L  A    D + ++P V I F+  GAR F +VT  N+
Sbjct: 240 SATGAVQGVPIVVKKKAIITGDLLTDAQVKIDSQNNEPYVAIDFNSTGARLFDQVTAANV 299

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           GK  A+VLDG V +APVI + I  G AQISGNF  + A  LA +LRAGSLP  + IV+  
Sbjct: 300 GKRFAIVLDGNVYSAPVIRERISGGSAQISGNFNEKEAADLAIVLRAGSLPAPVKIVQNV 359

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG  +G DSI KG  A   G++L+VLFM+  Y   GLVA+F + LNV+  L  L+ LGA
Sbjct: 360 TVGPSIGEDSISKGLMAGGIGILLVVLFMVFYYRMAGLVANFGMVLNVLFLLGALAALGA 419

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IA IVL +G++VDSN+L+ ER++EE R   +   S+D G+ +A+ T+ DS++T 
Sbjct: 420 TLTLPGIAAIVLLVGMSVDSNVLIFERVKEEIRLGCTPKMSIDAGYDKAFLTVMDSHVTT 479

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LI   VLF FG G V+GFA+++ L ++I++FT +   + +        +++ + I
Sbjct: 480 LITAAVLFQFGTGPVKGFAVSLSLGVIINLFTTLVTTKVVFDSAFSRFQIRRLSI 534



 Score =  114 bits (283), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 31/159 (19%), Positives = 80/159 (50%), Gaps = 4/159 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP I  + I KG++   I  + +++++   ++    L A   ++L++   LG  A  G  
Sbjct: 362 GPSIGEDSISKGLMAGGIGILLVVLFMVFYYRM-AGLVANFGMVLNVLFLLGALAALGAT 420

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +AA++ L+G SV+  V++++R+++ ++L     + +  ID   ++     + + +
Sbjct: 421 LTLPGIAAIVLLVGMSVDSNVLIFERVKEEIRL---GCTPKMSIDAGYDKAFLTVMDSHV 477

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              I+   +  +G   +  FA+ ++ G+++   +++   
Sbjct: 478 TTLITAAVLFQFGTGPVKGFAVSLSLGVIINLFTTLVTT 516


>gi|312911441|dbj|BAJ35415.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
          Length = 323

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 165/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  FW  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNFD   + +VR+    G++  Q    ++V         
Sbjct: 65  PAEMDVMREALQKAGYEEPQLQNFDSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++++ I++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|261856765|ref|YP_003264048.1| protein-export membrane protein SecF [Halothiobacillus neapolitanus
           c2]
 gi|261837234|gb|ACX97001.1| protein-export membrane protein SecF [Halothiobacillus neapolitanus
           c2]
          Length = 312

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 98/304 (32%), Positives = 164/304 (53%), Gaps = 3/304 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F L P      F   R +   IS L  I +I  L T G+N G+DF GG+ L V   +  
Sbjct: 1   MFNLFPYNAKFDFFGKRKYAYIISALLLIAAIVSLSTRGINLGLDFTGGVVLEVGYAKAA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL  +R +L+  +  +   Q F   +  ++RL   P     Q ++ + V   + +    +
Sbjct: 61  DLDAIRDDLKQNKFKEAVVQYFGSSETVMIRLP--PAKGQNQNQLADQVLSVLKKQDDSA 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           T++  E VGP + +EL   G + +I+    +LI++ +R++   A GA+ TL  D+    G
Sbjct: 119 TMRRVEFVGPAVGKELFNSGGLAMIVVLSGLLIFVSLRYQLKMATGAVLTLSHDLIMVFG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F ++ GIEFNLT +AA L L GYS+ND +VV+DRMR+N +         ++++ S+N+T+
Sbjct: 179 FISVTGIEFNLTVLAAYLALAGYSINDMIVVFDRMRENFRKIRKGSEI-EIMNASVNQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R+V T+   F+SVL + V+GG  +  F+  +  GIV+   SSI++A+ + L +   R  
Sbjct: 238 SRTVITATTTFLSVLALYVFGGEALRGFSETLLVGIVLGTFSSIYVASSLSLDLGLKRKD 297

Query: 830 NARI 833
             ++
Sbjct: 298 LLKL 301


>gi|83943029|ref|ZP_00955489.1| protein-export membrane protein SecF [Sulfitobacter sp. EE-36]
 gi|83846037|gb|EAP83914.1| protein-export membrane protein SecF [Sulfitobacter sp. EE-36]
          Length = 322

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 111/310 (35%), Positives = 184/310 (59%), Gaps = 7/310 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  LIPD   I F +      G S +  + ++ + FT GLNYGIDF+GG  L   ++  
Sbjct: 1   MRLRLIPDDTNIDFFKHAKLTFGASCVAVLLALAVWFTMGLNYGIDFRGGTTLRTQSDAA 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD++  R+ LE L++GD+S        +       +VR+Q Q G+  A   +++ V++ +
Sbjct: 61  VDVAAYRTALEPLELGDVSISEVFDPASDSTKHVAMVRIQAQEGEEAASPEMIQNVEEAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             + P     + E VGPK+S ELI+   + V  S  A+LIYIW+RF+W F++GA+  L  
Sbjct: 121 KTVAPNIVFTSVESVGPKVSGELIQTAFLAVAASLGAILIYIWLRFEWQFSVGAVAALFH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I F+L  +AA+LT+IGYS+ND VV++DR+R+N++ Y      R++++
Sbjct: 181 DVVLTIGVFSALQIRFDLAVIAAILTIIGYSINDTVVIFDRLRENLRKYKKR-DLREIMN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            S+NETL R++ TS    ++++ + V GG VI  F   + +G+VV   SS+++A  ++LF
Sbjct: 240 LSVNETLSRTLMTSGTTLLALIALLVLGGDVIRGFVFAITWGVVVGTYSSVYVAKNVVLF 299

Query: 823 IYDWRAKNAR 832
           +   R  + +
Sbjct: 300 LGVKRDWSKK 309


>gi|261393022|emb|CAX50614.1| preprotein translocase SecD subunit [Neisseria meningitidis 8013]
          Length = 618

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 332

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 512 NERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597



 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ +++    +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 513 ERIREELRV---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597


>gi|62259255|gb|AAX77848.1| unknown protein [synthetic construct]
          Length = 349

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 84/305 (27%), Positives = 160/305 (52%), Gaps = 3/305 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +          +I F+  + +    S+L  + S+  +FT GLN G+DF GG Q+ +  
Sbjct: 22  KHMLEMEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQT 81

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +     S   +   +    + +     G+ N  +        +     + +  +    ++
Sbjct: 82  STKSQDSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQV 141

Query: 646 VP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                + +Q+   +GP++ +EL   G++ +I++ + +LIYI  RF+  F + A   L+ D
Sbjct: 142 ENSLDAQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHD 201

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               LG F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N +    + S  +++++
Sbjct: 202 PIVILGIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNR 260

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           SIN+TL R++ TS    + V+ + ++GGS + +F++ +  GIVV   SSI++A  + + +
Sbjct: 261 SINDTLSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVAL 320

Query: 824 YDWRA 828
              R 
Sbjct: 321 GLNRE 325


>gi|166977687|sp|A8F0L9|SECF_RICM5 RecName: Full=Protein-export membrane protein secF
          Length = 308

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+P+ I   FM  +      SI+ S+ S   +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R  L  L IG++  QNF  E++  +R      +      +  +     +  
Sbjct: 61  DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKASLQSNF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S +A+++YIW+RF+WYF LG +  L+ D+ 
Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ SI
Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    +
Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298

Query: 826 WRAKNA 831
            +    
Sbjct: 299 RKFNKK 304


>gi|239947202|ref|ZP_04698955.1| protein-export membrane protein SecD [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921478|gb|EER21502.1| protein-export membrane protein SecD [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 518

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 193/532 (36%), Positives = 312/532 (58%), Gaps = 26/532 (4%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N   W + L  +     ++ ALPNF+  +        +P + ++LGLDLRGG+HL+ +
Sbjct: 1   MQNLPKWKIFLSIICTVFAVICALPNFMQVNS-----KFLPHDSVNLGLDLRGGAHLLFD 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           VD D ++N  ++  +D LR   +++ IG  ++   QN I L        + +   +    
Sbjct: 56  VDFDTYLNDSMENLADTLRKNFREDKIGYKNLLVRQNSIQLEVRSPEELKPLKKIINK-- 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         ++    E +I +  S++ ++ +++  ++QS+EI+R R+D  G  E 
Sbjct: 114 ----------IDPEIIAEINENKIKLSYSESRLNDLLNKVVDQSIEIVRMRVDSTGTKEP 163

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL------ 233
           T+Q+ G   IL+Q+PGE++PS L+ +LG TAK++FH V  N + +  + G   +      
Sbjct: 164 TLQKQGDKHILLQVPGEENPSYLKNILGKTAKLTFHLVDENANIEEAVKGHVPVGSMLVK 223

Query: 234 --RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
              +S G  Y+V  K  + G       +    +  + VV  SF+ +G++ F E+T++N G
Sbjct: 224 GDSESHGEYYVVIKKKVVLGGDQLTTASASFDQNSQAVVAFSFNNLGSKIFGEITKNNTG 283

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K LA+VLD ++L+AP IN AI  G   I+GNFT+E+A  LA +LRAGSLP  L I+EER+
Sbjct: 284 KRLAIVLDNKLLSAPTINGAIMGGSGIITGNFTVESANELALLLRAGSLPAPLKIIEERS 343

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +G +LG+DSI  G  A + G + + +FM+  YG  GL A+ ++ L ++  LALLSL  AT
Sbjct: 344 IGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVLGLFANIALSLALLYILALLSLFQAT 403

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A  TI DSN+T L
Sbjct: 404 LTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIKTGFESAVVTILDSNLTTL 463

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           I   +L+ FG GA++GFA+ + + I+ S+F+AI I + ++   ++Y K K +
Sbjct: 464 IVAFLLYIFGVGAIKGFAVALTIGIISSIFSAIIITKLLIDIWVKYFKPKKL 515



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 63/146 (43%), Gaps = 4/146 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  IA+ I++   +     L A   L L +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFIAVCIFMVWSYGVL-GLFANIALSLALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +      +S    I       +   + +
Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIKTGFESAVVTILDS 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPM 801
           ++   I    + ++G   I  FA+ +
Sbjct: 459 NLTTLIVAFLLYIFGVGAIKGFAVAL 484


>gi|317404684|gb|EFV85076.1| SecD protein [Achromobacter xylosoxidans C54]
          Length = 626

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 182/518 (35%), Positives = 283/518 (54%), Gaps = 24/518 (4%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             + LL A P ++                + LGLDLRGG H +L+VD    +       +
Sbjct: 110 VALNLLPASPTWMRAL------GWFAPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLA 163

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            ++RS L+ + + V  + +    +  SFA+++ ++     +   L         D +   
Sbjct: 164 ADVRSVLRDQKVNVAGVERSGMSVAASFANAQDRDRAISTLRSRL--------PDLEFTE 215

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
                +  +   L+   + +V   A++Q++  +  RI+++G++E  IQ+ GS RI++QLP
Sbjct: 216 SEENGKLLLLGALNPAAVTRVQDSALKQNINTLHNRINELGVAEPVIQQQGSDRIVVQLP 275

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248
           G QD ++ ++LLG TA +    V  + + +         FG+    D DG   LV  +V 
Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDSPAAQAALLGGSVPFGLERYSDRDGRPILVRRQVV 335

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304
           ++G +L  A    D +T +  V ++ D  GAR F +VTRDNIGK +         G V+T
Sbjct: 336 LTGENLQDAQPGRDSQTQQAAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           APVI   I  G+ QISG+ + E A   A +LRAG+L   ++I+EER +G  LG+D+I KG
Sbjct: 396 APVIRSEIAGGQVQISGSMSSEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNISKG 455

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             + + G + I +F+I+ Y  +G+ +   + LNV+L LALLS+L ATLTLP IA I L +
Sbjct: 456 FHSTLYGFLAIAVFIIIYYHLFGVFSTVGLTLNVLLLLALLSMLQATLTLPGIAAIALTL 515

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+A+DSN+L+NERIREE R   S   ++  GF RA+ TI DSN+T LI  + L  FG G 
Sbjct: 516 GMAIDSNVLINERIREELRNGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +RGFA+   L IL SMF+++  VRA+       KK  +
Sbjct: 576 IRGFAVVHCLGILTSMFSSVVGVRALANLWYGRKKKLT 613



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 83/209 (39%), Gaps = 4/209 (1%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G   ++      +  +   +    +I     +GP +  + I KG    +   +A+
Sbjct: 407 QVQISGSMSSEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNISKGFHSTLYGFLAI 466

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++I I +   F + +   L L++   L   ++      L  +AA+   +G +++  V++
Sbjct: 467 AVFIIIYYHL-FGVFSTVGLTLNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLI 525

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
            +R+R+ ++      S +  I        G  + +++   I  L +  +G   I  FA+ 
Sbjct: 526 NERIREELR---NGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              GI+ +  SS+     +    Y  + K
Sbjct: 583 HCLGILTSMFSSVVGVRALANLWYGRKKK 611



 Score = 41.6 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 36/124 (29%), Gaps = 21/124 (16%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I   +   IGLL  LPNF  +S   +                   S     + 
Sbjct: 3   RYPLWKYITVLIAVLIGLLYTLPNFYGESPAVQV------------------SSAKATIK 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D  +   ++    + +  +  EG+       +   +   F  +  +    D +   L  
Sbjct: 45  VDPAMLSRVEQILTDAK--IPNEGVYYEQNGTLG-TVRARFTSTDLQLQARDLIDKSLNT 101

Query: 122 VNSK 125
           V   
Sbjct: 102 VQGD 105


>gi|37678932|ref|NP_933541.1| preprotein translocase subunit SecD [Vibrio vulnificus YJ016]
 gi|161501848|ref|NP_759439.2| preprotein translocase subunit SecD [Vibrio vulnificus CMCP6]
 gi|37197674|dbj|BAC93512.1| preprotein translocase subunit SecD [Vibrio vulnificus YJ016]
 gi|319999072|gb|AAO08966.2| protein-export membrane protein SecD [Vibrio vulnificus CMCP6]
          Length = 618

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 156/524 (29%), Positives = 275/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    D  RS L+   I
Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRDAKI 163

Query: 87  GVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+R    + I +   D         ++          L+ D             +  
Sbjct: 164 RYRSIRPVGSDAIEVLLRDGEELSQAKRELEK--------LHPDMAFVESDKDGRYALIA 215

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 216 TFTETRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275

Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G    +D +G   +++ +V +SG  +    ++
Sbjct: 276 LGATATLEFREVDDKADLAAAASGRAPAGSEIKQDRNGRPVVLKKRVILSGASITD-ASS 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    ++ NIGK +A V                       
Sbjct: 335 SVDEYGRPQVNISLDSEGGNKMAAFSKKNIGKLMATVFAEYKDSGRKSPEGKVILTKHEE 394

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 395 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A + G+V ++LF ++ Y K+GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 455 MGIQACIWGMVAVMLFTLLYYRKFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 514

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 515 LTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 TGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRINKLSI 618



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 91/213 (42%), Gaps = 5/213 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 466

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 467 VMLFTLLYYR-KFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      + +  I +            ++   I+ + +   G   I  FA
Sbjct: 526 LIFERIREELRE---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 582

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++ GI+ +  ++I     I+  +Y  +  N 
Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLLYGGKRINK 615


>gi|170767721|ref|ZP_02902174.1| protein-export membrane protein SecF [Escherichia albertii TW07627]
 gi|170123209|gb|EDS92140.1| protein-export membrane protein SecF [Escherichia albertii TW07627]
          Length = 323

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIASIVIMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    +++K        
Sbjct: 65  PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSKVLKVINESTHQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|311108321|ref|YP_003981174.1| protein-export membrane protein SecD [Achromobacter xylosoxidans
           A8]
 gi|310763010|gb|ADP18459.1| protein-export membrane protein SecD [Achromobacter xylosoxidans
           A8]
          Length = 626

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 180/518 (34%), Positives = 281/518 (54%), Gaps = 24/518 (4%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             + LL A P ++                + LGLDLRGG H +L+VD    +       +
Sbjct: 110 VALNLLPASPAWMRAL------GWFAPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLA 163

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            ++RS L+ + + V  + +    I  +FA++  ++     +   L         D +   
Sbjct: 164 ADVRSVLRDQKVNVAGVERSGLAIAATFANADDRDRAISTLRSRL--------PDLEFTE 215

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
                +  +   L+   + +V   A++Q++  +  RI+++G++E  IQ+ G+ RI++QLP
Sbjct: 216 REENGKPLLMAALNPAAVTRVQDSALKQNINTLHNRINELGVAEPVIQQQGADRIVVQLP 275

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248
           G QD ++ ++LLG TA +    V    + +         FG+    D DG   LV  +V 
Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDTPAAQAALLGGSVPFGLERYNDRDGRPILVRRQVI 335

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304
           ++G +L  A    D +T +  V ++ D  GAR F +VTRDNIGK +         G V+T
Sbjct: 336 LTGENLQDAQPGRDSQTQQAAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           APVI   I  G+ QISG+ + E A   A +LRAG+L   ++I+EER +G  LG+D+I KG
Sbjct: 396 APVIRGEIAGGQVQISGSMSSEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKG 455

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             + + G + I +F+I+ Y  +G+ +   + +NV+L LALLS+L ATLTLP IA I L +
Sbjct: 456 FYSTLYGFLAIAVFIILYYHLFGVFSTIGLTMNVLLLLALLSMLQATLTLPGIAAIALTL 515

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+A+DSN+L+NERIREE R   S   ++  GF RA+ TI DSN+T LI  + L  FG G 
Sbjct: 516 GMAIDSNVLINERIREELRAGASPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +RGFA+   L IL SMF+++  VRA+       KK  +
Sbjct: 576 IRGFAVVHVLGILTSMFSSVVGVRALANLWYGRKKKLT 613



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 87/247 (35%), Gaps = 4/247 (1%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                  ++    + L                           G   ++      +  + 
Sbjct: 369 FRDVTRDNIGKRMAILLFENGKGEVVTAPVIRGEIAGGQVQISGSMSSEEAADTALLLRA 428

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +    +I     +GP +  + I KG    +   +A+ ++I + +   F + +   L +
Sbjct: 429 GALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFLAIAVFIILYYHL-FGVFSTIGLTM 487

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           ++   L   ++      L  +AA+   +G +++  V++ +R+R+ ++      S +  I 
Sbjct: 488 NVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLINERIREELRA---GASPQQAIH 544

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                  G  + +++   I  L +  +G   I  FA+    GI+ +  SS+     +   
Sbjct: 545 HGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVVHVLGILTSMFSSVVGVRALANL 604

Query: 823 IYDWRAK 829
            Y  + K
Sbjct: 605 WYGRKKK 611



 Score = 39.7 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 35/124 (28%), Gaps = 21/124 (16%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I   +   IGLL  LPNF  +S   +                   S     + 
Sbjct: 3   RYPLWKYITVLVAVIIGLLYTLPNFYGESPAVQV------------------SSAKATIK 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D  +   +     + +  +  EG+       +   +   F  +  +    D +   L  
Sbjct: 45  VDPAMLNRVDQILTDAK--IPNEGVYYEQNGTLG-TVRARFTSTDLQLQARDLIDRSLNT 101

Query: 122 VNSK 125
           V   
Sbjct: 102 VAGD 105


>gi|261401412|ref|ZP_05987537.1| protein-export membrane protein SecD [Neisseria lactamica ATCC
           23970]
 gi|269208540|gb|EEZ74995.1| protein-export membrane protein SecD [Neisseria lactamica ATCC
           23970]
          Length = 617

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 166/506 (32%), Positives = 278/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKAMPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGPDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K             +            L+  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPAKLREASEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G   
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           + +FM+V Y   G  +  ++  N++  + +LS L ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VAVFMVVYYRLMGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R   +   ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   +
Sbjct: 511 NERIREELRAGVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 84/208 (40%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +    A+ 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 VFMVVYYRL-MGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     ++ +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 41.2 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L ++   +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIALTVAVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         ++ + LK+ GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------DQTRSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|187922707|ref|YP_001894349.1| preprotein translocase subunit SecD [Burkholderia phytofirmans
           PsJN]
 gi|187713901|gb|ACD15125.1| protein-export membrane protein SecD [Burkholderia phytofirmans
           PsJN]
          Length = 687

 Score =  218 bits (555), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 163/516 (31%), Positives = 272/516 (52%), Gaps = 24/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L  A P +L                + LGLDLRGG H +L+VD    +N  L   
Sbjct: 109 IVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ + I    + ++   + ++FAD    +N + +++  +  +       P   
Sbjct: 160 ASDARTLLRDKNIRDGGVNRVNQSVVINFADQATADNASKQLSRSIAELQWASQAGPDGG 219

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           + +  T        +      V   A++Q++  +  R++++G++E  IQ+ G+ RI+++L
Sbjct: 220 VQLVGT-------FTPAVQKAVQDAALKQNITTLHNRVNELGVAEPVIQQQGADRIVVEL 272

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L+  ++  
Sbjct: 273 PGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQIIF 332

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    ++RDNIGKP+A+VL  +    +   
Sbjct: 333 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVASISRDNIGKPMAMVLFEKGKGEVLTV 391

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I KG  
Sbjct: 392 ATIQSELGDRFQITGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFH 451

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           ++V G   I +FMI  Y  +G+++   + +N++L +A+LS+L ATLTLP IA I L +G+
Sbjct: 452 SVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALGM 511

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+D+N+L+NER+REE R       ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 512 AIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGIALLAFGSGPVR 571

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           GFAI   + IL SMF+A+   R ++      KK   
Sbjct: 572 GFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 80/185 (43%), Gaps = 4/185 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG   V+    A+ +++   +   F + ++  L +++   +
Sbjct: 429 MDIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFMIAYY-MLFGVISMIGLSVNLLLLI 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++        +  I       
Sbjct: 488 AVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGAPPQLAIQNGYAHA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ + +  +G   +  FAI    GI+ +  S++F +  I+   Y  + 
Sbjct: 545 WATILDSNVTTLIAGIALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKK 604

Query: 829 KNARI 833
           K   +
Sbjct: 605 KLKSL 609



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 29/123 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   IGL+  LPN   ++                           ++V 
Sbjct: 3   RYPLWKYAVMLVALVIGLVYTLPNLFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                          + + L    I    +    +     I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDSTTLSAVEAALAANQIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQK 97

Query: 118 FLQ 120
            L 
Sbjct: 98  SLN 100


>gi|148284959|ref|YP_001249049.1| preprotein translocase subunit SecD [Orientia tsutsugamushi str.
           Boryong]
 gi|146740398|emb|CAM80856.1| protein-export membrane protein [Orientia tsutsugamushi str.
           Boryong]
          Length = 520

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 184/530 (34%), Positives = 306/530 (57%), Gaps = 19/530 (3%)

Query: 1   MRNNPW-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+   +  + +  +I  I L   +PNF   +        +P+  I+LGLDL+GGS+++L+
Sbjct: 1   MKQFLFNKIFITVLITAIALCFVVPNFFDTTKY----QWLPQKTINLGLDLKGGSYVLLQ 56

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           +D D +V   L +    LR  L+   IG   ++  +  I L   DS  +  + + +    
Sbjct: 57  LDFDTYVTEQLNIIVGNLRKELRNNKIGYKELKIQKQYIHLELRDSEARFKVENLLRNLE 116

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +           L+  +   ++ I  + + + ++    IE SMEIIR R+D  G +E+
Sbjct: 117 TSI-----------LIKFSQNNKLHISFTDHKLSELRESLIENSMEIIRMRVDSSGTTEA 165

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG---VRFLRDS 236
            IQ+ G + I++++PG +DP  L+ L+   AK++F+ V      +        +     +
Sbjct: 166 NIQKHGDNNIILEVPGIEDPKHLKNLVTKIAKLTFNIVDSGIVAQDQHISKDLMLVKEQN 225

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +    L+  +    G  L         K  +PVV  +F+ +G + F ++T++  G+ LA+
Sbjct: 226 NPENKLLVRRQPTIGGDLLTNANVSFNKYSQPVVSFTFNSLGTKLFADITKEYQGRRLAI 285

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           +LDG++L+APVI++ I  G   ISGNFTIE+A  L+ +L++G+LP  L+++EE+ +G  L
Sbjct: 286 ILDGKLLSAPVISEPILGGAGMISGNFTIESAKELSLLLKSGALPAALSVIEEKTIGPTL 345

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           GSDSI+ G  A   G VL+ +FM+ +YG  GL A+ ++F ++I  LA+LS+L ATLTLP 
Sbjct: 346 GSDSIHAGKLAGCIGFVLVCIFMLCIYGILGLFANIALFFSLIYILAILSMLQATLTLPG 405

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGI+L IG+AVD+NIL+ ERIREE +   S+  S+  GF  +++TI DSNIT L+A ++
Sbjct: 406 IAGIILTIGMAVDANILIYERIREELQNGSSILYSVREGFKLSFATIIDSNITTLLAAIL 465

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           L+ FG GAV+GFAIT+ + IL SM++A  I R ++   ++YK    ++  
Sbjct: 466 LYIFGTGAVKGFAITLAIGILSSMYSATIITRLLIDSWVKYKLPIKLNTT 515



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 75/176 (42%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G +   I  + + I++   +     L A   L   +   L   ++  
Sbjct: 340 TIGPTLGSDSIHAGKLAGCIGFVLVCIFMLCIYGIL-GLFANIALFFSLIYILAILSMLQ 398

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  +++Y+R+R+ ++      S    + +    +    + +
Sbjct: 399 ATLTLPGIAGIILTIGMAVDANILIYERIREELQ---NGSSILYSVREGFKLSFATIIDS 455

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   ++ + + ++G   +  FAI +A GI+ +  S+  I   ++     ++    
Sbjct: 456 NITTLLAAILLYIFGTGAVKGFAITLAIGILSSMYSATIITRLLIDSWVKYKLPIK 511


>gi|256027956|ref|ZP_05441790.1| protein translocase subunit secF [Fusobacterium sp. D11]
 gi|289765901|ref|ZP_06525279.1| translocase subunit secF [Fusobacterium sp. D11]
 gi|289717456|gb|EFD81468.1| translocase subunit secF [Fusobacterium sp. D11]
          Length = 316

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 148/295 (50%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +  ++     + ISI+    SI + FT GLNYGIDF GG    +  +         
Sbjct: 1   MKTHLHIIKNIKIYLSISIILVSLSIIIFFTKGLNYGIDFSGGNLFQLKYSGTAVTLNQI 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +        ++   N +  K  +             +   +       + +   T+   +
Sbjct: 61  NENLDELAKELPQVNSNSRKVQISDDGTVIVRVPEISENDKKKVLNSLQQLGSYTLDKED 120

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  I  +L +  I  + I AI +++YI +RF++ FA+G I +L+ DI   +GF AL G
Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVVYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E +   +AA+LT++GYS+ND +V+YDR+R+N+K      +    +D+S+N+T  RS+ T
Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEQCMDESVNQTAIRSLNT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           S+    SV+ + ++GG+ + +F + +  GI+    SSIF+A PI+  +   +  N
Sbjct: 241 SVTTLFSVIAILIFGGASLKTFIMTLLIGILAGTYSSIFVATPIVYLLNKRKGNN 295


>gi|83954203|ref|ZP_00962923.1| protein-export membrane protein SecF [Sulfitobacter sp. NAS-14.1]
 gi|83841240|gb|EAP80410.1| protein-export membrane protein SecF [Sulfitobacter sp. NAS-14.1]
          Length = 321

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 111/310 (35%), Positives = 184/310 (59%), Gaps = 7/310 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  LIPD   I F +      G S +  + ++ + FT GLNYGIDF+GG  L   ++  
Sbjct: 1   MRLRLIPDDTNIDFFKHAKLTFGASCVAVLLALAVWFTMGLNYGIDFRGGTTLRTQSDAA 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD++  R+ LE L++GD+S        +       +VR+Q Q G+  A   +++ V++ +
Sbjct: 61  VDVAAYRTALEPLELGDVSISEVFDPASDSTKHVAMVRIQAQEGEEAASPEMIQNVEEAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             + P     + E VGPK+S ELI+   + V  S  A+LIYIW+RF+W F++GA+  L  
Sbjct: 121 KTVAPNIVFTSVESVGPKVSGELIQTAFLAVAASLGAILIYIWLRFEWQFSVGAVAALFH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I F+L  +AA+LT+IGYS+ND VV++DR+R+N++ Y      R++++
Sbjct: 181 DVVLTIGVFSALQIRFDLAVIAAILTIIGYSINDTVVIFDRLRENLRKYKKR-DLREIMN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            S+NETL R++ TS    ++++ + V GG VI  F   + +G+VV   SS+++A  ++LF
Sbjct: 240 LSVNETLSRTLMTSGTTLLALIALLVLGGDVIRGFVFAITWGVVVGTYSSVYVAKNVVLF 299

Query: 823 IYDWRAKNAR 832
           +   R  + +
Sbjct: 300 LGVKRDWSKK 309


>gi|258542153|ref|YP_003187586.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633231|dbj|BAH99206.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636290|dbj|BAI02259.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639343|dbj|BAI05305.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642399|dbj|BAI08354.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645454|dbj|BAI11402.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648507|dbj|BAI14448.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651560|dbj|BAI17494.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654551|dbj|BAI20478.1| protein translocase membrane subunit SecF [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 316

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 136/307 (44%), Positives = 192/307 (62%), Gaps = 3/307 (0%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +        +     I FMR R+ G+ +S + SI SI L F  GL  G+DF+GGI +   
Sbjct: 1   MFGRPLLRFVRKDTQINFMRGRYMGLIVSAVLSIASIILFFHPGLTLGLDFRGGIVVEAK 60

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            + P D + +RS L +  I   S Q F    + L+RL    GD      V++ V++ +TE
Sbjct: 61  TSGPADFAKLRSALGAQHISHASLQAFGAPDDVLIRL--DAGDDQNTDAVVDTVRRAVTE 118

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             P +TI   + VG  +S EL R G++ + +S   +L+YIW RF+W FAL A+ TL+LD+
Sbjct: 119 AQPGTTILRADAVGASVSAELFRNGMLALGLSLAMILVYIWFRFEWEFALSAVITLVLDL 178

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           TKT+GF  + G EF+L  VAA+LT++GYS NDKVVVYDR+R+N++ Y T +   DLI+ S
Sbjct: 179 TKTMGFLVITGFEFDLVMVAAILTILGYSTNDKVVVYDRVRENLRKYRT-MPLIDLINLS 237

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           INETL R++ TS   F++ LP+A+WGG+ +  FA  M FGIVV  SSSIFIAAP+LLF+ 
Sbjct: 238 INETLNRTLGTSSTVFLAALPLALWGGATLSGFAWTMLFGIVVGTSSSIFIAAPLLLFMG 297

Query: 825 DWRAKNA 831
           + R K  
Sbjct: 298 EGRLKRG 304


>gi|121634401|ref|YP_974646.1| preprotein translocase subunit SecD [Neisseria meningitidis FAM18]
 gi|120866107|emb|CAM09845.1| putative protein-export membrane protein [Neisseria meningitidis
           FAM18]
          Length = 618

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 275/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS  +R  L++E I
Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGGIRRELRREKI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 332

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 512 NERIREELRVGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597



 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ +++    +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 513 ERIREELRV---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 4   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + L+  GI    M  + N + + F D+  +    D +   L
Sbjct: 48  ---------EQTQSKVDAALQNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 96


>gi|260494132|ref|ZP_05814263.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_33]
 gi|260198278|gb|EEW95794.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_33]
          Length = 316

 Score =  218 bits (554), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 148/295 (50%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +  ++     + ISI+    SI + FT GLNYGIDF GG    +  +         
Sbjct: 1   MKTHLHIIKNIKIYLSISIILVSLSIIIFFTKGLNYGIDFSGGNLFQLKYSGTTVTLNQI 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +        ++   N +  K  +             +   +       + +   T+   +
Sbjct: 61  NENLDELAKELPQVNSNSRKVQISDDGTVIVRVPEISENDKKKVLNSLQQLGSYTLDKED 120

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  I  +L +  I  + I AI +++YI +RF++ FA+G I +L+ DI   +GF AL G
Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVVYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E +   +AA+LT++GYS+ND +V+YDR+R+N+K      +    +D+S+N+T  RS+ T
Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEQCMDESVNQTAIRSLNT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           S+    SV+ + ++GG+ + +F + +  GI+    SSIF+A PI+  +   +  N
Sbjct: 241 SVTTLFSVIAILIFGGASLKTFIMTLLIGILAGTYSSIFVATPIVYLLNKRKGNN 295


>gi|309378988|emb|CBX22441.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 617

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 166/506 (32%), Positives = 278/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKAMPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGPDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K             +            L+  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPAKLREASEGNVPAGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G   
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           + +FM+V Y   G  +  ++  N++  + +LS L ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VAVFMVVYYRLMGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R   +   ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   +
Sbjct: 511 NERIREELRAGVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 84/208 (40%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +    A+ 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 VFMVVYYRL-MGFFSTIALSTNILFLIGILSALQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     ++ +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 41.2 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L ++   +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIALTVAVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         ++ + LK+ GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------DQTRSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|239948358|ref|ZP_04700111.1| protein-export membrane protein SecF [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239922634|gb|EER22658.1| protein-export membrane protein SecF [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 308

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 173/306 (56%), Gaps = 2/306 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+P+ I   FM  +      SI+ S+ S   +  +  N GIDF GGI + V  
Sbjct: 1   MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNSGIDFAGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R  L  L IG++  QNF  E++  +R      +      +  +     +  
Sbjct: 61  DQAPDLPKMRGVLGELGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKASLQSNF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S +A+++YIW+RF+WYF LG +  L+ D+ 
Sbjct: 120 SYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ SI
Sbjct: 180 LALGFMSMIKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    +
Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298

Query: 826 WRAKNA 831
            +    
Sbjct: 299 RKFNKK 304


>gi|238650712|ref|YP_002916565.1| preprotein translocase subunit SecF [Rickettsia peacockii str.
           Rustic]
 gi|238624810|gb|ACR47516.1| preprotein translocase subunit SecF [Rickettsia peacockii str.
           Rustic]
          Length = 308

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+P+ I   FM  +      SI+ S+ S   +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R  L  L IG++  QNF  E++  +R      +      +  +     +  
Sbjct: 61  DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKGSLQSNF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S +A+++YIW+RF+WYF LG +  L+ D+ 
Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ SI
Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    +
Sbjct: 239 NETLSRTMLTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298

Query: 826 WRAKNA 831
            +    
Sbjct: 299 RKFNKK 304


>gi|114570448|ref|YP_757128.1| protein translocase subunit SecF [Maricaulis maris MCS10]
 gi|114340910|gb|ABI66190.1| protein translocase subunit secF [Maricaulis maris MCS10]
          Length = 314

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 105/300 (35%), Positives = 169/300 (56%), Gaps = 9/300 (3%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I F+RAR+  + +S LF + S+    T G+N+GIDF+GGIQ  V A     +  +RS  
Sbjct: 14  KIPFIRARWIALAVSGLFILFSMFEFATVGINFGIDFRGGIQTEVTALNTTSIEDLRSTA 73

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPG--------DSVAQTRVLEMVKKKITEIVPLST 650
             L +G+   Q      +                     AQ    + ++  +T   P   
Sbjct: 74  NGLDLGEARVQGAGSVGDDRTTYLISLPLQAGEGLEGEAAQNTARQALEAALTTTFPDIQ 133

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ T ++G  +S ELI  G   + I+   ML+YIW RF+W +++GAI  L  D+  T+G 
Sbjct: 134 MRGTTVIGGAVSGELIVTGFTAIGIALFLMLVYIWFRFEWQYSVGAIVALTHDVIATIGM 193

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+L  + F+L  VAA+LT++GYS+ND VVVYDR+R+N++ Y      ++++D SIN+TL 
Sbjct: 194 FSLTQMTFDLATVAAILTIVGYSMNDTVVVYDRIRENLRKY-KRKPLQEVLDLSINDTLS 252

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ TS+   ++++ + + GG+ +  FA  M +G+++   SSIF+AAPILLF    R  N
Sbjct: 253 RTILTSVTTLVALISLYLIGGTALKGFAFAMIWGVMIGTFSSIFVAAPILLFTNVQRESN 312


>gi|15676511|ref|NP_273651.1| preprotein translocase subunit SecD [Neisseria meningitidis MC58]
 gi|7225837|gb|AAF41034.1| protein-export membrane protein SecD [Neisseria meningitidis MC58]
          Length = 618

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 276/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ  N +T+   D+   +    ++                    + +    I + 
Sbjct: 165 RSGTVRQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 212

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 213 LSEEAVNKVCSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 272

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 273 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 332

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597


>gi|114570449|ref|YP_757129.1| protein-export membrane protein SecD [Maricaulis maris MCS10]
 gi|114340911|gb|ABI66191.1| protein-export membrane protein SecD [Maricaulis maris MCS10]
          Length = 551

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 183/545 (33%), Positives = 289/545 (53%), Gaps = 25/545 (4%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQS------------MLDRFPSAMPKNRISLGLDLRG 52
            W ++   +I  +G++  +PNF+P+                     +P   I+LGLDL+G
Sbjct: 6   RWKLLSIFLITLLGVMYTIPNFVPEEDRFTINEVDGTATPKGIWRFIPAGTINLGLDLQG 65

Query: 53  GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENI 111
           GSH+V EVD D+  +  L+  + ++R+ L+    +   S+  I +++ +       ++  
Sbjct: 66  GSHIVFEVDMDEVRDAQLETLASDIRTTLRDAPPVLARSVAVIGDEVVVLLVRPEERDTA 125

Query: 112 ADKVTLFLQGVNSKLNV----DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            +++      V + +      +        +    I I ++    + + +  +EQS+ +I
Sbjct: 126 LERIRELNAPVTTGIGQVGLSNMYDIGADPSDPSAIRISVTSQQYESIRNRTLEQSITVI 185

Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP-------- 219
           R+R+D +G ++ TI R G  R+L+Q+PG  DP  +  L+GT A MSFH V          
Sbjct: 186 RRRLDGLGTTDPTIARSGDRRVLVQVPGADDPQEIIDLVGTQAAMSFHMVDENVDPGPNG 245

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
                  +               VE +  ++G +LN +     P    PVV    D  GA
Sbjct: 246 QARTPPGVTVYPMADTGGTQWLAVETRQRLTGENLNSSNVTTHPSYVGPVVGFRLDTQGA 305

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
             F E+TR N G+  A+VLD  ++TAP IN+ I SG   I G++T ETA  L  +L AG+
Sbjct: 306 LIFGELTRANRGRRFAIVLDNEIITAPTINEPILSGSGVIGGSYTYETANQLVILLNAGA 365

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           LP  L  VE+R V   LG D +  G  AI+ G  L+++FM+ +YG +GL +  ++ +NV+
Sbjct: 366 LPASLTPVEQRVVTGTLGQDQVESGKLAIMIGFALVIVFMVAMYGVFGLFSTMALLVNVV 425

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           L L  LS LG TLTLP IAGI+L IG+AVD+N+L+ ERIREE   N++   +L  G+ RA
Sbjct: 426 LILGGLSGLGMTLTLPGIAGIILTIGMAVDANVLIYERIREEVLNNRTPVQALQAGYERA 485

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            + I D+NIT  IA  VL+  G G VRGFA+T+G+ I+ S+FTA  + R + +  +R  K
Sbjct: 486 LAAILDANITTFIAAAVLYMLGAGPVRGFAVTLGIGIITSVFTAFVVSRLLAVLWLRAFK 545

Query: 520 MKSID 524
            K + 
Sbjct: 546 PKKLP 550



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            + ++ +  G + ++I    +++++   +   F L +   L++++   LG  +  G+   
Sbjct: 381 TLGQDQVESGKLAIMIGFALVIVFMVAMYGV-FGLFSTMALLVNVVLILGGLSGLGMTLT 439

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +A ++  IG +V+  V++Y+R+R+ +       +    +       L   +  ++  
Sbjct: 440 LPGIAGIILTIGMAVDANVLIYERIREEVLNNR---TPVQALQAGYERALAAILDANITT 496

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           FI+   + + G   +  FA+ +  GI+ +  ++ F+ + +L  ++    K  ++
Sbjct: 497 FIAAAVLYMLGAGPVRGFAVTLGIGIITSVFTA-FVVSRLLAVLWLRAFKPKKL 549


>gi|114331423|ref|YP_747645.1| preprotein translocase subunit SecF [Nitrosomonas eutropha C91]
 gi|114308437|gb|ABI59680.1| protein translocase subunit secF [Nitrosomonas eutropha C91]
          Length = 310

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 94/303 (31%), Positives = 159/303 (52%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I F R     +  S++ SI +I  L T GLN  +DF GG  + +   +P D
Sbjct: 1   MDFFRFERDIPFTRWGKLSMTFSLIISILAIYSLVTKGLNLAVDFTGGTVMEISYQQPAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L   R  L S+ + D   QNF   ++ ++RL  +   +     + E V   + +  P   
Sbjct: 61  LDKTRKVLASIGMPDAIVQNFGTSRDVIIRLPVKAEHTGG--NLSETVMTALKKDDPSVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++  EL+  G++ ++  ++ ++ Y+  RF+W F +  I   + D+   LG 
Sbjct: 119 MRRVEFVGPQVGDELLENGLLAMLFVSMGIVAYLAFRFEWKFGVSCIIANLHDVLIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+ F  EF+LT +AAVL ++GYSVN+ VV+ DR+R+N +          +I+ +I ET+ 
Sbjct: 179 FSFFQWEFDLTVLAAVLAILGYSVNESVVISDRIRENFRKLRK-ADVTRVINNAITETMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R+V T  +  + V+ M ++GG  + +FA+ +  GI+    SSI IA+PILL +   R   
Sbjct: 238 RTVITHGSTQLVVISMLLFGGEALHNFALALTIGILFGIYSSIMIASPILLLLGAKREDL 297

Query: 831 ARI 833
            +I
Sbjct: 298 VKI 300


>gi|15800136|ref|NP_286148.1| preprotein translocase subunit SecF [Escherichia coli O157:H7
           EDL933]
 gi|15829714|ref|NP_308487.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128394|ref|NP_414943.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|74310978|ref|YP_309397.1| preprotein translocase subunit SecF [Shigella sonnei Ss046]
 gi|89107279|ref|AP_001059.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K-12 substr. W3110]
 gi|157156867|ref|YP_001461590.1| preprotein translocase subunit SecF [Escherichia coli E24377A]
 gi|157159929|ref|YP_001457247.1| preprotein translocase subunit SecF [Escherichia coli HS]
 gi|161486297|ref|NP_752453.2| preprotein translocase subunit SecF [Escherichia coli CFT073]
 gi|168749865|ref|ZP_02774887.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756945|ref|ZP_02781952.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761609|ref|ZP_02786616.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768354|ref|ZP_02793361.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776291|ref|ZP_02801298.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783269|ref|ZP_02808276.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786250|ref|ZP_02811257.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC869]
 gi|168800286|ref|ZP_02825293.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC508]
 gi|170021219|ref|YP_001726173.1| preprotein translocase subunit SecF [Escherichia coli ATCC 8739]
 gi|170079995|ref|YP_001729315.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170684249|ref|YP_001742544.1| preprotein translocase subunit SecF [Escherichia coli SMS-3-5]
 gi|187730856|ref|YP_001879116.1| preprotein translocase subunit SecF [Shigella boydii CDC 3083-94]
 gi|188495767|ref|ZP_03003037.1| protein-export membrane protein SecF [Escherichia coli 53638]
 gi|191166755|ref|ZP_03028582.1| protein-export membrane protein SecF [Escherichia coli B7A]
 gi|191173507|ref|ZP_03035034.1| protein-export membrane protein SecF [Escherichia coli F11]
 gi|193065194|ref|ZP_03046267.1| protein-export membrane protein SecF [Escherichia coli E22]
 gi|193068694|ref|ZP_03049655.1| protein-export membrane protein SecF [Escherichia coli E110019]
 gi|194428793|ref|ZP_03061328.1| protein-export membrane protein SecF [Escherichia coli B171]
 gi|194432581|ref|ZP_03064867.1| protein-export membrane protein SecF [Shigella dysenteriae 1012]
 gi|194438905|ref|ZP_03070990.1| protein-export membrane protein SecF [Escherichia coli 101-1]
 gi|195938528|ref|ZP_03083910.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806301|ref|ZP_03248638.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816355|ref|ZP_03257534.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822982|ref|ZP_03263300.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396358|ref|YP_002269051.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4115]
 gi|209917621|ref|YP_002291705.1| preprotein translocase subunit SecF [Escherichia coli SE11]
 gi|215485490|ref|YP_002327921.1| preprotein translocase subunit SecF [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326541|ref|ZP_03442625.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552972|ref|YP_002385885.1| preprotein translocase subunit SecF [Escherichia coli IAI1]
 gi|218557318|ref|YP_002390231.1| preprotein translocase subunit SecF [Escherichia coli S88]
 gi|218688272|ref|YP_002396484.1| preprotein translocase subunit SecF [Escherichia coli ED1a]
 gi|218693870|ref|YP_002401537.1| preprotein translocase subunit SecF [Escherichia coli 55989]
 gi|218698686|ref|YP_002406315.1| preprotein translocase subunit SecF [Escherichia coli IAI39]
 gi|218703691|ref|YP_002411210.1| preprotein translocase subunit SecF [Escherichia coli UMN026]
 gi|238899697|ref|YP_002925493.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           BW2952]
 gi|253774606|ref|YP_003037437.1| preprotein translocase subunit SecF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160475|ref|YP_003043583.1| preprotein translocase subunit SecF [Escherichia coli B str.
           REL606]
 gi|254791590|ref|YP_003076427.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str.
           TW14359]
 gi|256020376|ref|ZP_05434241.1| preprotein translocase subunit SecF [Shigella sp. D9]
 gi|256023974|ref|ZP_05437839.1| preprotein translocase subunit SecF [Escherichia sp. 4_1_40B]
 gi|260842607|ref|YP_003220385.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli
           O103:H2 str. 12009]
 gi|260853629|ref|YP_003227520.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli
           O26:H11 str. 11368]
 gi|260866567|ref|YP_003232969.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli
           O111:H- str. 11128]
 gi|261223886|ref|ZP_05938167.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256400|ref|ZP_05948933.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291281313|ref|YP_003498131.1| Protein-export membrane protein SecF [Escherichia coli O55:H7 str.
           CB9615]
 gi|293413663|ref|ZP_06656312.1| preprotein translocase SecF subunit [Escherichia coli B185]
 gi|297517228|ref|ZP_06935614.1| preprotein translocase subunit SecF [Escherichia coli OP50]
 gi|301025759|ref|ZP_07189273.1| protein-export membrane protein SecF [Escherichia coli MS 196-1]
 gi|306813125|ref|ZP_07447318.1| preprotein translocase subunit SecF [Escherichia coli NC101]
 gi|307137051|ref|ZP_07496407.1| preprotein translocase subunit SecF [Escherichia coli H736]
 gi|307312216|ref|ZP_07591852.1| protein-export membrane protein SecF [Escherichia coli W]
 gi|312964569|ref|ZP_07778825.1| protein-export membrane protein SecF [Escherichia coli 2362-75]
 gi|312970504|ref|ZP_07784685.1| protein-export membrane protein SecF [Escherichia coli 1827-70]
 gi|331656463|ref|ZP_08357425.1| protein-export membrane protein SecF [Escherichia coli TA206]
 gi|331661784|ref|ZP_08362707.1| protein-export membrane protein SecF [Escherichia coli TA143]
 gi|331666758|ref|ZP_08367632.1| protein-export membrane protein SecF [Escherichia coli TA271]
 gi|331681802|ref|ZP_08382435.1| protein-export membrane protein SecF [Escherichia coli H299]
 gi|84028693|sp|P0AG95|SECF_ECO57 RecName: Full=Protein-export membrane protein secF
 gi|84028694|sp|P0AG94|SECF_ECOL6 RecName: Full=Protein-export membrane protein secF
 gi|84028695|sp|P0AG93|SECF_ECOLI RecName: Full=Protein-export membrane protein secF
 gi|12513259|gb|AAG54756.1|AE005220_5 protein secretion, membrane protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|581231|emb|CAA39635.1| unnamed protein product [Escherichia coli K-12]
 gi|1786610|gb|AAC73512.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13359917|dbj|BAB33883.1| protein-export membrane protein secF [Escherichia coli O157:H7 str.
           Sakai]
 gi|73854455|gb|AAZ87162.1| SecF [Shigella sonnei Ss046]
 gi|85674549|dbj|BAE76189.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K12 substr. W3110]
 gi|157065609|gb|ABV04864.1| protein-export membrane protein SecF [Escherichia coli HS]
 gi|157078897|gb|ABV18605.1| protein-export membrane protein SecF [Escherichia coli E24377A]
 gi|169756147|gb|ACA78846.1| protein-export membrane protein SecF [Escherichia coli ATCC 8739]
 gi|169887830|gb|ACB01537.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170521967|gb|ACB20145.1| protein-export membrane protein SecF [Escherichia coli SMS-3-5]
 gi|187427848|gb|ACD07122.1| protein-export membrane protein SecF [Shigella boydii CDC 3083-94]
 gi|187768264|gb|EDU32108.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015915|gb|EDU54037.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4113]
 gi|188490966|gb|EDU66069.1| protein-export membrane protein SecF [Escherichia coli 53638]
 gi|188999400|gb|EDU68386.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356032|gb|EDU74451.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362402|gb|EDU80821.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368089|gb|EDU86505.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373576|gb|EDU91992.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC869]
 gi|189377423|gb|EDU95839.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC508]
 gi|190903266|gb|EDV62988.1| protein-export membrane protein SecF [Escherichia coli B7A]
 gi|190906216|gb|EDV65828.1| protein-export membrane protein SecF [Escherichia coli F11]
 gi|192927168|gb|EDV81789.1| protein-export membrane protein SecF [Escherichia coli E22]
 gi|192958057|gb|EDV88499.1| protein-export membrane protein SecF [Escherichia coli E110019]
 gi|194413096|gb|EDX29383.1| protein-export membrane protein SecF [Escherichia coli B171]
 gi|194419142|gb|EDX35225.1| protein-export membrane protein SecF [Shigella dysenteriae 1012]
 gi|194422199|gb|EDX38201.1| protein-export membrane protein SecF [Escherichia coli 101-1]
 gi|208726102|gb|EDZ75703.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733003|gb|EDZ81691.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737175|gb|EDZ84859.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157758|gb|ACI35191.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC4115]
 gi|209744134|gb|ACI70374.1| protein-export membrane protein secF [Escherichia coli]
 gi|209744136|gb|ACI70375.1| protein-export membrane protein secF [Escherichia coli]
 gi|209744138|gb|ACI70376.1| protein-export membrane protein secF [Escherichia coli]
 gi|209744140|gb|ACI70377.1| protein-export membrane protein secF [Escherichia coli]
 gi|209744142|gb|ACI70378.1| protein-export membrane protein secF [Escherichia coli]
 gi|209910880|dbj|BAG75954.1| preprotein translocase SecF [Escherichia coli SE11]
 gi|215263562|emb|CAS07892.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli
           O127:H6 str. E2348/69]
 gi|217322762|gb|EEC31186.1| protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350602|emb|CAU96292.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           55989]
 gi|218359740|emb|CAQ97281.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           IAI1]
 gi|218364087|emb|CAR01752.1| SecYEG protein translocase auxillary subunit [Escherichia coli S88]
 gi|218368672|emb|CAR16412.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           IAI39]
 gi|218425836|emb|CAR06642.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           ED1a]
 gi|218430788|emb|CAR11662.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           UMN026]
 gi|222032204|emb|CAP74943.1| Protein-export membrane protein secF [Escherichia coli LF82]
 gi|238863515|gb|ACR65513.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           BW2952]
 gi|242376187|emb|CAQ30878.1| secF, subunit of SecD-SecF-YajC-YidC Secretion Complex and Sec
           Protein Secretion Complex [Escherichia coli BL21(DE3)]
 gi|253325650|gb|ACT30252.1| protein-export membrane protein SecF [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972376|gb|ACT38047.1| protein export protein SecF [Escherichia coli B str. REL606]
 gi|253976586|gb|ACT42256.1| protein export protein SecF [Escherichia coli BL21(DE3)]
 gi|254590990|gb|ACT70351.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|257752278|dbj|BAI23780.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli
           O26:H11 str. 11368]
 gi|257757754|dbj|BAI29251.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli
           O103:H2 str. 12009]
 gi|257762923|dbj|BAI34418.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli
           O111:H- str. 11128]
 gi|260450404|gb|ACX40826.1| protein-export membrane protein SecF [Escherichia coli DH1]
 gi|281177579|dbj|BAI53909.1| preprotein translocase SecF [Escherichia coli SE15]
 gi|284920216|emb|CBG33275.1| protein-export protein [Escherichia coli 042]
 gi|290761186|gb|ADD55147.1| Protein-export membrane protein SecF [Escherichia coli O55:H7 str.
           CB9615]
 gi|291433721|gb|EFF06694.1| preprotein translocase SecF subunit [Escherichia coli B185]
 gi|294491094|gb|ADE89850.1| protein-export membrane protein SecF [Escherichia coli IHE3034]
 gi|299879986|gb|EFI88197.1| protein-export membrane protein SecF [Escherichia coli MS 196-1]
 gi|305853888|gb|EFM54327.1| preprotein translocase subunit SecF [Escherichia coli NC101]
 gi|306907718|gb|EFN38220.1| protein-export membrane protein SecF [Escherichia coli W]
 gi|307552314|gb|ADN45089.1| protein-export membrane protein SecF [Escherichia coli ABU 83972]
 gi|307628122|gb|ADN72426.1| preprotein translocase subunit SecF [Escherichia coli UM146]
 gi|309700671|emb|CBI99967.1| protein-export protein [Escherichia coli ETEC H10407]
 gi|310337153|gb|EFQ02291.1| protein-export membrane protein SecF [Escherichia coli 1827-70]
 gi|312290803|gb|EFR18680.1| protein-export membrane protein SecF [Escherichia coli 2362-75]
 gi|312944986|gb|ADR25813.1| preprotein translocase subunit SecF [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315059686|gb|ADT74013.1| SecYEG protein translocase auxillary subunit [Escherichia coli W]
 gi|315135091|dbj|BAJ42250.1| preprotein translocase [Escherichia coli DH1]
 gi|320173773|gb|EFW48956.1| Protein-export membrane protein SecF [Shigella dysenteriae CDC
           74-1112]
 gi|320181609|gb|EFW56524.1| Protein-export membrane protein SecF [Shigella boydii ATCC 9905]
 gi|320192822|gb|EFW67462.1| Protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           EC1212]
 gi|320201650|gb|EFW76226.1| Protein-export membrane protein SecF [Escherichia coli EC4100B]
 gi|320638398|gb|EFX08112.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str.
           G5101]
 gi|320643778|gb|EFX12901.1| preprotein translocase subunit SecF [Escherichia coli O157:H- str.
           493-89]
 gi|320649129|gb|EFX17707.1| preprotein translocase subunit SecF [Escherichia coli O157:H- str.
           H 2687]
 gi|320656022|gb|EFX23938.1| preprotein translocase subunit SecF [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661172|gb|EFX28603.1| preprotein translocase subunit SecF [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665148|gb|EFX32241.1| preprotein translocase subunit SecF [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152123|gb|EFZ38416.1| protein-export membrane protein SecF [Escherichia coli EPECa14]
 gi|323160484|gb|EFZ46432.1| protein-export membrane protein SecF [Escherichia coli E128010]
 gi|323184765|gb|EFZ70136.1| protein-export membrane protein SecF [Escherichia coli 1357]
 gi|323191327|gb|EFZ76590.1| protein-export membrane protein SecF [Escherichia coli RN587/1]
 gi|323379748|gb|ADX52016.1| protein-export membrane protein SecF [Escherichia coli KO11]
 gi|323938594|gb|EGB34843.1| protein-export membrane protein SecF [Escherichia coli E1520]
 gi|323943215|gb|EGB39371.1| protein-export membrane protein SecF [Escherichia coli E482]
 gi|323945310|gb|EGB41366.1| protein-export membrane protein SecF [Escherichia coli H120]
 gi|323952979|gb|EGB48847.1| protein-export membrane protein SecF [Escherichia coli H252]
 gi|323958602|gb|EGB54305.1| protein-export membrane protein SecF [Escherichia coli H263]
 gi|323963395|gb|EGB58957.1| protein-export membrane protein SecF [Escherichia coli H489]
 gi|323965361|gb|EGB60819.1| protein-export membrane protein SecF [Escherichia coli M863]
 gi|323972259|gb|EGB67469.1| protein-export membrane protein SecF [Escherichia coli TA007]
 gi|324116893|gb|EGC10806.1| protein-export membrane protein SecF [Escherichia coli E1167]
 gi|326341169|gb|EGD64961.1| Protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           1044]
 gi|326346055|gb|EGD69794.1| Protein-export membrane protein SecF [Escherichia coli O157:H7 str.
           1125]
 gi|327254727|gb|EGE66343.1| protein-export membrane protein SecF [Escherichia coli STEC_7v]
 gi|330910203|gb|EGH38713.1| protein-export membrane protein SecF [Escherichia coli AA86]
 gi|331054711|gb|EGI26720.1| protein-export membrane protein SecF [Escherichia coli TA206]
 gi|331060206|gb|EGI32170.1| protein-export membrane protein SecF [Escherichia coli TA143]
 gi|331065982|gb|EGI37866.1| protein-export membrane protein SecF [Escherichia coli TA271]
 gi|331081004|gb|EGI52169.1| protein-export membrane protein SecF [Escherichia coli H299]
 gi|332085841|gb|EGI91005.1| protein-export membrane protein SecF [Shigella dysenteriae 155-74]
 gi|332094559|gb|EGI99605.1| protein-export membrane protein SecF [Shigella boydii 5216-82]
 gi|332341772|gb|AEE55106.1| preprotein translocase subunit SecF [Escherichia coli UMNK88]
 gi|333008604|gb|EGK28072.1| protein-export membrane protein SecF [Shigella flexneri VA-6]
 gi|333010851|gb|EGK30277.1| protein-export membrane protein SecF [Shigella flexneri K-272]
 gi|333021350|gb|EGK40603.1| protein-export membrane protein SecF [Shigella flexneri K-227]
          Length = 323

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    +++K        
Sbjct: 65  PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|144899892|emb|CAM76756.1| Protein export membrane protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 314

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 168/306 (54%), Gaps = 4/306 (1%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL-A 585
                 LI       F+  R     ++    I +   + T G N+GIDF GGI + V   
Sbjct: 1   MSFYANLIARTPKFDFVGKRIPAFFLTAALIIGTFVSIATKGFNFGIDFAGGILVEVQKV 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             P D++ +R  L +L +G++S Q F      ++    +          +  + K    +
Sbjct: 61  EGPADMAHMRDVLGNLGLGEVSLQQFGESGRDVMVRVQKQDGDE--KAQMAALAKVKETL 118

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  EIVGPK+  EL R G + V++S +A+  Y+W RF+W F +GA+     D+ 
Sbjct: 119 GGGYEYRRVEIVGPKVGDELKRDGALAVVLSVLAIAAYVWFRFEWQFGVGALIATFHDVI 178

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T GFF++ G+EFNLT+VAA+LT+ GYS+ND VV+YDR+R+N++ Y  ++S  DL+++++
Sbjct: 179 LTFGFFSVTGMEFNLTSVAAILTIAGYSINDTVVIYDRVRENLRKY-KTLSLYDLLNQAV 237

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R+  T    F++V+ + + GG V+  FA  + +G+VV   SS+++A P+L++   
Sbjct: 238 NETLARTFLTVATVFLTVIALLLLGGEVLHGFAASLLWGLVVGTFSSMYVAIPVLIYFNL 297

Query: 826 WRAKNA 831
              K  
Sbjct: 298 RVGKER 303


>gi|229586352|ref|YP_002844853.1| preprotein translocase subunit SecF [Rickettsia africae ESF-5]
 gi|228021402|gb|ACP53110.1| Protein-export membrane protein secF [Rickettsia africae ESF-5]
          Length = 308

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 174/306 (56%), Gaps = 2/306 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+P+ I   FM  +      SI+ S+ S   +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R  L  L IG++  QNF  E++  +R      +      +  +     +  
Sbjct: 61  DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKGFLQSNF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S +A+++YIW+RF+WYF LG +  L+ D+ 
Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  D+I+ SI
Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITDIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    +
Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298

Query: 826 WRAKNA 831
            +    
Sbjct: 299 RKFNKK 304


>gi|34580892|ref|ZP_00142372.1| protein-export membrane protein secF [Rickettsia sibirica 246]
 gi|28262277|gb|EAA25781.1| protein-export membrane protein secF [Rickettsia sibirica 246]
          Length = 308

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+P+ I   FM  +      SI+ S+ S   +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFISIGIYKFNFGIDFAGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R  L  L IG++  QNF  E++  +R      +      +  +     +  
Sbjct: 61  DQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKGFLQSNF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S +A+++YIW+RF+WYF LG +  L+ D+ 
Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ SI
Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    +
Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFVN 298

Query: 826 WRAKNA 831
            +    
Sbjct: 299 RKFNKK 304


>gi|294788538|ref|ZP_06753780.1| protein-export membrane protein SecD [Simonsiella muelleri ATCC
           29453]
 gi|294483415|gb|EFG31100.1| protein-export membrane protein SecD [Simonsiella muelleri ATCC
           29453]
          Length = 614

 Score =  218 bits (554), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 171/501 (34%), Positives = 287/501 (57%), Gaps = 21/501 (4%)

Query: 29  QSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
           Q+ +   P  + K   N + LGLDLRGG   +++VD    +   L  Y+ ++R  L+K+ 
Sbjct: 106 QNQISNSPEWLAKMGANPMFLGLDLRGGVEFIMQVDMKAALEKTLDRYAGDVRRELRKQK 165

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           I + ++R+  N I + F D         ++    +G+N            +      I++
Sbjct: 166 IRIGTIRKTANSIVIPFQDQADANKSLPELQKLFEGMN------------LVVDGNNITL 213

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            L +  + Q+   A++Q++  +  R++++G SE  IQ+ G+ RI++Q+PG  D ++ + +
Sbjct: 214 TLPETLLTQIRHDAVKQNINTLHNRVNELGTSEPVIQQAGADRIMVQIPGMTDTAKAKDI 273

Query: 206 LGTTAKMSFHKVLPNNSKKGF--MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           +G TA +    V             G   L D++G+QYL+  +VE++G ++N A A+ D 
Sbjct: 274 IGRTATLEVRMVHDGGLNSDGTIPEGYEVLADNEGHQYLISKQVELTGDNINSAQASVDD 333

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSGKAQI 319
           +T +P V ++ D  G+  F ++T  N GK +A+VL  +    V+TAP IN+ I  G+ QI
Sbjct: 334 RTKRPAVALALDGTGSSIFADLTTANTGKRMAMVLIDQGKSEVITAPNINEPITGGRVQI 393

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +G  +   A  +A +LR+GSL   + IV+ER +G  LG+++I KG  + V G + + +FM
Sbjct: 394 TGMASDAEAQDVALLLRSGSLAAPMEIVQERTIGPSLGAENITKGIHSTVWGFMAVAIFM 453

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
           IV Y  +GL++  ++  N++   A+LS+L  TLTLP IA + L +G+A+DSN+L+NERIR
Sbjct: 454 IVYYRFFGLLSTVALSTNLLFLFAILSMLQVTLTLPGIAAMALTLGMAIDSNVLINERIR 513

Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
           EE R  Q    ++  GF  A++TI DSN+T+LIA V L  FG GAVRGFAI     I+ S
Sbjct: 514 EELRHGQKAQVAIKEGFDHAWNTILDSNLTSLIAGVALLIFGSGAVRGFAIVHCFGIMTS 573

Query: 500 MFTAISIVRAMMIFIIRYKKM 520
           +F+++ + RAM+      ++ 
Sbjct: 574 IFSSVVVFRAMVNAFYGKRRK 594



 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 95/247 (38%), Gaps = 6/247 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                  +  +     L     S        N  +         +A     + V   +  
Sbjct: 352 FADLTTANTGKRMAMVLIDQGKSEVITAPNINEPITGGRVQITGMASDAEAQDVALLLRS 411

Query: 645 IV--PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   I     +GP +  E I KGI   +   +A+ I++ + +++ F L +   L  
Sbjct: 412 GSLAAPMEIVQERTIGPSLGAENITKGIHSTVWGFMAVAIFMIVYYRF-FGLLSTVALST 470

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           ++       ++  +   L  +AA+   +G +++  V++ +R+R+ ++        +  I 
Sbjct: 471 NLLFLFAILSMLQVTLTLPGIAAMALTLGMAIDSNVLINERIREELR---HGQKAQVAIK 527

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +  +      + +++ + I+ + + ++G   +  FAI   FGI+ +  SS+ +   ++  
Sbjct: 528 EGFDHAWNTILDSNLTSLIAGVALLIFGSGAVRGFAIVHCFGIMTSIFSSVVVFRAMVNA 587

Query: 823 IYDWRAK 829
            Y  R K
Sbjct: 588 FYGKRRK 594


>gi|24374629|ref|NP_718672.1| preprotein translocase subunit SecF [Shewanella oneidensis MR-1]
 gi|24349256|gb|AAN56116.1|AE015748_4 protein-export membrane protein SecF [Shewanella oneidensis MR-1]
          Length = 315

 Score =  218 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 97/291 (33%), Positives = 163/291 (56%), Gaps = 3/291 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + F++       +S +  + SI LL T GLN+G+DF GG  + +  + PVDL+  RS 
Sbjct: 9   RTVNFLKHALPVSIMSAVLVLGSIVLLATKGLNWGLDFTGGTVVEMSFSTPVDLNQFRSQ 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L + +      QN+   ++ LVRL  + G S     V   + K   ++ P    +  E V
Sbjct: 69  LTTPETSSAVVQNYGSSRDVLVRLPVKEGISSDVQVV--EIVKFAQQLDPNVVQKRVEFV 126

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++ +EL  +G + V+++ I ++IYI  RF+W  A GA+  L  D+  TLG F+L  +E
Sbjct: 127 GPQVGKELAEQGGLAVLVALICIMIYIAFRFEWRLATGAVAALAHDVMVTLGVFSLTQME 186

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +A VLT++GYS+ND +VV+DR+R+N      S    ++++ SI +T+ R++ T  
Sbjct: 187 FDLTVLAGVLTVVGYSLNDTIVVFDRVRENFLKMRKSEP-EEVVNVSITQTMSRTIITMG 245

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + V+ + + GGS+I  FA  +  GI V   SS+++A  + + +   R 
Sbjct: 246 TTLVVVVALFLSGGSMIHGFAAALLLGISVGTYSSVYVATYLAIKLGVNRE 296


>gi|197283991|ref|YP_002149863.1| preprotein translocase subunit SecD [Proteus mirabilis HI4320]
 gi|194681478|emb|CAR40320.1| protein-export membrane protein SecD [Proteus mirabilis HI4320]
          Length = 615

 Score =  218 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 162/524 (30%), Positives = 274/524 (52%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD +  +    +   D LR+ L+ EGI
Sbjct: 104 NLAPATPKWLEAIGGEPMKLGLDLRGGVHFLMEVDMETALGKLQEQNVDSLRTLLRDEGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+R+  N  + + F ++  +   +D +               +  +        +  
Sbjct: 164 PYSSIRKTDNYGVEIRFRNADDRSKASDYLARR-----------NQDLIFRNGDNNSLKA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           + +   +    ++A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 IFTDERLRDARTYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N        G            DG   ++  +V ++G H+  +T+ 
Sbjct: 273 LGATATLEFRLVNTNVDPSALETGRIPGDSEVKYTRDGRPTILYKRVVLTGDHITDSTSQ 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D    +P V IS D  G       T+DN+GKP+A +      +                
Sbjct: 333 ADEYG-QPQVSISLDSAGGSIMSNFTKDNVGKPMATLFVEYKDSGKRDENDRAILVKNEE 391

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q       +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINVANIQTRLGNNFRITGISNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIT 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GL+  V FMI+ Y K+G++A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 452 QGLEACLWGLIASVAFMIIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  V+L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIIDANLTTLITAVILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT  + +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 615



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D      N  ++ + +    N    +  L       G S A       +  +   
Sbjct: 369 FVEYKDSGKRDENDRAILVKNEEVINVANIQTRLGNNFRITGISNANEARQLSLLLRAGA 428

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA + ++ I ++  F + A T L+ ++
Sbjct: 429 LIAPIQIVEERTIGPTLGLQNITQGLEACLWGLIASVAFMIIYYR-KFGVIASTALLANL 487

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +
Sbjct: 488 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    +  ++   I+ + +   G   I  FAI  A G+  +  ++I     I+  +
Sbjct: 545 GYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLL 604

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 605 YGGKRIKK 612



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 76/255 (29%), Gaps = 38/255 (14%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++      IGLL ALPN   +                          +     
Sbjct: 4   RYPLWKYLMLIFAILIGLLYALPNLYGEDPA---------------------VQIT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD----KVTL 117
                   L       RS L KE I   S+      I   F++   +    +     +  
Sbjct: 42  GTAANEQTLDQV----RSLLDKEKIEAKSIALENGAILARFSNPDIQLRAREALLPALGD 97

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQR 170
                 +     PK    +     ++ +        L + +++  +    EQ+++ +R  
Sbjct: 98  KFVVALNLAPATPKWLEAIGGEPMKLGLDLRGGVHFLMEVDMETALGKLQEQNVDSLRTL 157

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT-AKMSFHKVLPNNSKKGFMFG 229
           +   GI  S+I++  ++ + I+     D S+    L      + F     N+ K  F   
Sbjct: 158 LRDEGIPYSSIRKTDNYGVEIRFRNADDRSKASDYLARRNQDLIFRNGDNNSLKAIFTDE 217

Query: 230 VRFLRDSDGNQYLVE 244
                 +   Q  + 
Sbjct: 218 RLRDARTYAVQQNIT 232


>gi|320157292|ref|YP_004189671.1| protein-export membrane protein SecD [Vibrio vulnificus MO6-24/O]
 gi|319932604|gb|ADV87468.1| protein-export membrane protein SecD [Vibrio vulnificus MO6-24/O]
          Length = 607

 Score =  218 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 156/524 (29%), Positives = 275/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    D  RS L+   I
Sbjct: 93  NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEDAFRSELRDAKI 152

Query: 87  GVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+R    + I +   D         ++          L+ D             +  
Sbjct: 153 RYRSIRPVGSDAIEVLLRDGEELSQAKRELEK--------LHPDMAFVESDKDGRYALIA 204

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 205 TFTETRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264

Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G    +D +G   +++ +V +SG  +    ++
Sbjct: 265 LGATATLEFREVDDKADLAAAASGRAPAGSEIKQDRNGRPVVLKKRVILSGASITD-ASS 323

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    ++ NIGK +A V                       
Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMAAFSKKNIGKLMATVFAEYKDSGRKSPEGKVILTKHEE 383

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A + G+V ++LF ++ Y K+GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 444 MGIQACIWGMVAVMLFTLLYYRKFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 503

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 504 LTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRINKLSI 607



 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 91/213 (42%), Gaps = 5/213 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMLFTLLYYR-KFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      + +  I +            ++   I+ + +   G   I  FA
Sbjct: 515 LIFERIREELRE---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++ GI+ +  ++I     I+  +Y  +  N 
Sbjct: 572 VTLSIGILTSMFTAIIGTRCIVNLLYGGKRINK 604


>gi|291288352|ref|YP_003505168.1| protein-export membrane protein SecD [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885512|gb|ADD69212.1| protein-export membrane protein SecD [Denitrovibrio acetiphilus DSM
           12809]
          Length = 515

 Score =  218 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 187/539 (34%), Positives = 289/539 (53%), Gaps = 41/539 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N        +++    L   LP                  ++ LGLDL+GG H+VL VD 
Sbjct: 2   NLKLRWAFIAIVIAWALFSMLP---------------LNEKLKLGLDLQGGMHVVLGVDT 46

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQG 121
           D  V   ++  +++LR  L  E +    ++      +++S       E   + +      
Sbjct: 47  DKAVEAKVEAMANQLRKELATEKVDFAFVQKTDMKTLSISLRSKEAFEQAKEIIAENYPT 106

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + +          +  + E  +S +L  + + +V  +A+EQS+E++R RID+ G+SE  I
Sbjct: 107 LQN----------ISISKENTLSYMLESSAVTRVRDYAVEQSLEVVRNRIDEFGVSEPVI 156

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD---- 237
           QR G  ++++QLPG  DP R   L+G TA++ F+ V  N S +    G     D      
Sbjct: 157 QRQGKKQVVVQLPGVTDPDRAIDLIGKTAQLKFYIVDDNVSAQEAEGGNIPFDDIILYQK 216

Query: 238 -----------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                         ++V+    ++G +L  A  N     + P+V    D  G++ F E+T
Sbjct: 217 QTDDITGQTIGRVPFVVKKDAVLTGEYLVDAEVNLSTTYNTPIVQFRLDAAGSKLFEELT 276

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
            DNIG  +A+VLD  V +APVI   IP G A I G  T++ A  LA +LRAGSLP  ++I
Sbjct: 277 ADNIGNRMAIVLDDNVYSAPVIRSRIPGGSAYIDGINTMQEAKDLAIVLRAGSLPAPVSI 336

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            E R VG  LG DSI  G  A + GL LIV FM+V Y   G+VA+ ++  N ++ L  +S
Sbjct: 337 EENRTVGPSLGQDSINSGVKAALIGLALIVAFMLVYYRMAGIVANIALATNFVIILGFMS 396

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
             GATLTLP IAGI+L IG++VD+N+L+ ER+REE R  ++   +L+ G+ +A+STI D+
Sbjct: 397 QFGATLTLPGIAGIILTIGMSVDANVLIFERVREELRMGRTPMNALEYGYGKAFSTIMDA 456

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           NIT +IA +VLF FG G ++GFA+T+ + IL S+FTAI + +A+    +R K +  + I
Sbjct: 457 NITTIIAAIVLFQFGTGPIKGFAVTLSIGILASLFTAIFVTKAVFWTFLRSKDVTKLSI 515



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 91/205 (44%), Gaps = 4/205 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
           Y  G +  Q      +  +   +    +I+    VGP + ++ I  G+   +I    ++ 
Sbjct: 308 YIDGINTMQEAKDLAIVLRAGSLPAPVSIEENRTVGPSLGQDSINSGVKAALIGLALIVA 367

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + ++    + A   L  +    LGF + FG    L  +A ++  IG SV+  V++++
Sbjct: 368 FMLVYYRM-AGIVANIALATNFVIILGFMSQFGATLTLPGIAGIILTIGMSVDANVLIFE 426

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +++     +  + ++    +     +  ++   I+ + +  +G   I  FA+ ++
Sbjct: 427 RVREELRM---GRTPMNALEYGYGKAFSTIMDANITTIIAAIVLFQFGTGPIKGFAVTLS 483

Query: 803 FGIVVAASSSIFIAAPILLFIYDWR 827
            GI+ +  ++IF+   +       +
Sbjct: 484 IGILASLFTAIFVTKAVFWTFLRSK 508


>gi|90579383|ref|ZP_01235193.1| protein export protein SecF [Vibrio angustum S14]
 gi|90440216|gb|EAS65397.1| protein export protein SecF [Vibrio angustum S14]
          Length = 315

 Score =  218 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 166/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L+     + FMR   +    S++  + SI  + T GLN+G+DF GG  + V    P 
Sbjct: 1   MRELLNANKVVDFMRWSKFAFIFSLIMIMGSIATISTKGLNWGLDFTGGTLIEVSFKEPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L ++R +LE    GD   QNF   ++ +VRLQ + G    +    +++           
Sbjct: 61  NLPLIRESLEKAGFGDAVVQNFGTARDVMVRLQPREG-VKGEVLGNQILDALKDGTAQSV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + ++I+ + +L+Y+ +RF+W  A GA+ +L  DI  T+G
Sbjct: 120 EMRRIEFVGPNVGDELAEAGGMAILIALLCILLYVSLRFEWRLAAGAVLSLAHDIIITVG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  +E +LT VAA+LT++GYS+ND +VV+DR+R+N +      S  ++++ SI++TL
Sbjct: 180 IFSVLQVEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKG-SPSEIMNCSISQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GGS+I  FA+ +  GI +   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFAQGGSMIHGFALALLIGITIGTYSSIYVASALALKLGITRE 297


>gi|283956489|ref|ZP_06373969.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792209|gb|EFC30998.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 323

 Score =  218 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 155/285 (54%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR RF  + +S +    SI LL+  GL YGIDF GG  + +       ++ +R  LE
Sbjct: 10  YDFMRMRFTAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                        G    +       G +   +  +      + +      ++  ++VGP
Sbjct: 70  KQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ + +S IA+LIYI +RF+W FAL AI + I D+  TLG  +LF I+ N
Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVLT++GYS+ND ++++DR+R+ +K  +       +I++S++ TL R+V TS   
Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSRTVLTSGLT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +V+ +  +GG +I  F++ +  GI+    SSIF+A+P LL+  
Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPTLLWFK 291


>gi|158424517|ref|YP_001525809.1| SecF protein [Azorhizobium caulinodans ORS 571]
 gi|158331406|dbj|BAF88891.1| SecF protein [Azorhizobium caulinodans ORS 571]
          Length = 321

 Score =  218 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 103/292 (35%), Positives = 178/292 (60%), Gaps = 5/292 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DLSVVR 595
              I FMR R     +S L ++ ++ +  T G N GIDF+GG  +   +++   DLSV+R
Sbjct: 10  HTNIGFMRLRRVTFPLSALMTLLAVAMFVTVGFNLGIDFRGGTLIEAQSSQQAADLSVLR 69

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L    +GD+  Q F   ++ L+R+     D   Q  +++ V+  +       T++  E
Sbjct: 70  EQLTDSDLGDVQIQEFGSARDVLIRVGRVGADDAGQQAIVDKVRTAL---GQDFTVRRVE 126

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +S EL+R+ I+ +++ A+ +LIY+W RF+W FA+GA+ T   DI  TL  ++  G
Sbjct: 127 TVGPSVSSELVRQSILALVLGAVVVLIYLWFRFEWQFAVGALVTTAHDIFVTLLIYSALG 186

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I+F+LT++AA+LT++GYS+ND VVVYDR+R+ ++ Y   I   +L+D ++N T  R++  
Sbjct: 187 IDFDLTSIAAILTIMGYSLNDTVVVYDRIREMLRRY-KKIPLPELLDIAVNATFSRTIIV 245

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           S+  F++ + + ++GG V+  F++ MA G+++   S+IF+AAPIL+ +    
Sbjct: 246 SLTTFLATMALYLFGGEVLRGFSLAMAVGVIIGTYSTIFVAAPILIHLGLRS 297


>gi|89072682|ref|ZP_01159247.1| protein export protein SecD [Photobacterium sp. SKA34]
 gi|89051502|gb|EAR56956.1| protein export protein SecD [Photobacterium sp. SKA34]
          Length = 617

 Score =  218 bits (553), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 154/523 (29%), Positives = 284/523 (54%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     + + LGLDLRGG H ++EVD D  ++  L    +  R+ L++E I
Sbjct: 104 NLAASTPAWLESIGASPMKLGLDLRGGVHFLMEVDMDAAMDKLLGQQEETFRTELREEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++ + ++ + +   D    E     +          L+ D             ++  
Sbjct: 164 RYRAISKTKDSVQVRLRDEAQLEQAEVALEK--------LHPDMLFTTSKINGRYVLTAK 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A++Q++ I+R R++++G++E  +QR G++RI+++LPG QD +R +++L
Sbjct: 216 FTEERLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQGANRIVVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G       DG   +++ +V ++G H+  + ++ 
Sbjct: 276 GATATLEFREVDSEADLAAAAAGRVPAGSEVKMTRDGRPAVLKKRVILAGSHITDSNSSA 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
           D    +P V+IS D  G  +    +++NIGK +A V                       +
Sbjct: 336 DEYG-RPQVNISLDTEGGSKMTAFSKNNIGKLMATVFTEYKDSGKRTPEGKVILTKHEEV 394

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  L+ +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 395 INQATIQSALGRSFRITGIDSQAEAHNLSLLLRAGALIAPISIVEERTIGPSMGQQNIDM 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y  +G++A+ ++ +N++L + ++S++  AT+TLP IAGIVL
Sbjct: 455 GVQACIWGMVAVMLFTLLYYRGFGMIANLALMMNLVLIIGIMSMIPGATMTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ +S   ++  G+  A+STI D+NIT LI  ++LF  G 
Sbjct: 515 TVGMAVDANVLIFERIREELREGRSPQQAIQQGYGNAFSTIADANITTLITAIILFAVGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   RA++  I   K++  + I
Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIIGTRAVVNLIYGGKRVDKLSI 617



 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 82/174 (47%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP + ++ I  G+   I   +A++++  + ++  F + A   L++++   +G  ++  
Sbjct: 442 TIGPSMGQQNIDMGVQACIWGMVAVMLFTLLYYR-GFGMIANLALMMNLVLIIGIMSMIP 500

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R+R+ ++      S +  I +           
Sbjct: 501 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQGYGNAFSTIAD 557

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     ++  IY  + 
Sbjct: 558 ANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNLIYGGKR 611



 Score = 42.8 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 80/290 (27%), Gaps = 39/290 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++      IGLL ALPN   +    +   A              G+ + +   
Sbjct: 4   RYPLWKNLMVLFALIIGLLYALPNVYGEDPAIQITGAR-------------GASVNM--- 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                        D +   LKK  I   S+   +  + + F D+  + +  D        
Sbjct: 48  ----------SALDTVTEDLKKNNIPYKSVVFEKGSVLVRFNDTDTQISARDI------- 90

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               LN +   + +V       +    ++     +   ++    +    + ++ +  +  
Sbjct: 91  ----LNSELGDDYVVALNLAASTPAWLESIGASPMKLGLDLRGGV--HFLMEVDMDAAMD 144

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + LG      +    ++  R R +  T   +          ++  +   +   D      
Sbjct: 145 KLLGQQEETFRTELREEKIRYRAISKTKDSVQVRLRDEAQLEQAEVALEKLHPDMLFTTS 204

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
            +  +  ++                   + I  + +      E      G
Sbjct: 205 KINGRYVLTAKFTEERLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQG 254


>gi|113461455|ref|YP_719524.1| preprotein translocase subunit SecF [Haemophilus somnus 129PT]
 gi|112823498|gb|ABI25587.1| protein translocase subunit secF [Haemophilus somnus 129PT]
          Length = 313

 Score =  218 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 156/302 (51%), Gaps = 5/302 (1%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +I       FM+ R+WG   SI+ +      +FT G N+G+DF GG  +    +
Sbjct: 1   MHEYKGVILPFKLTPFMKYRYWGYAFSIIVTAVCFFFIFTKGFNWGLDFTGGTVIDTHFS 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +P DL+ VRS L+   I     Q   G ++ ++RL        +   V   +K  +  + 
Sbjct: 61  QPADLNKVRSTLKENGIESALVQTTGGVRDVMIRLPVV----ESSAEVGNKIKTILNSLD 116

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               I + E VGP +  EL +  I   + + + +L YI  RF+W    GA+  L  D+  
Sbjct: 117 EGLEIHSIEFVGPNVGEELTQGAIYATLATLLMLLGYIAFRFEWRLGTGAVIALAHDVIV 176

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           TLG F+ F IE +LT VAA+L+++GYS+ND +VV+DR+R+N +     I   ++ID S+ 
Sbjct: 177 TLGVFSYFQIEMDLTFVAAILSVVGYSLNDSIVVFDRVRENFRKI-RRIDTVEIIDISLT 235

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +TL R++ TS+     V+ +  +GG  I SF++ +  GI     S+I+IA  + L +   
Sbjct: 236 QTLARTLMTSITTLFVVIALFAFGGPTIHSFSLALLIGIAFGTYSTIYIAITLALDLGLK 295

Query: 827 RA 828
           R 
Sbjct: 296 RE 297


>gi|237808773|ref|YP_002893213.1| protein-export membrane protein SecD [Tolumonas auensis DSM 9187]
 gi|237501034|gb|ACQ93627.1| protein-export membrane protein SecD [Tolumonas auensis DSM 9187]
          Length = 617

 Score =  218 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 165/523 (31%), Positives = 283/523 (54%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D+ +N   +    + R+ L+++GI
Sbjct: 104 NLAPATPEWLTSIGASPLKLGLDLRGGVHFLMEVDMDEAINKAQEQLVQDFRTSLREDGI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R+    + ++F DS  ++     +      +      D  +  +           
Sbjct: 164 RYAGVRRAAGDVVVAFRDSDTQQKGLAHLRKRHIDLTLTDYEDKGQFWV--------KAS 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+     V   A+EQ++ IIR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 MSEAKQKSVTEDALEQNITIIRNRVNELGVAEPLVQRQGTARIVVELPGIQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V  N      M G          D +G   +++ ++ ++G H+ G++++ 
Sbjct: 276 GATATLEFRLVDENADAAAAMNGQVPPNSELFYDRNGRPVVLQKRIILTGDHITGSSSSA 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV-------------- 307
           D    +P V I  D +G  R    T+D+IGK +A V                        
Sbjct: 336 DEYG-RPQVSIKLDGVGGNRMSTATKDSIGKAMASVFIEYKPVGEPGADGKRRIEKHEEV 394

Query: 308 ----INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  T + A  L+ +LR+G+L   + IVEER +G  +G  +I  
Sbjct: 395 INVATIQSRLGSDFRITGIDTTQEAHNLSLLLRSGALTAPIQIVEERTIGPSMGQANIDS 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A+  G +++V+FM + Y  +G+VA+ ++  NV+L + ++S++  AT+TLP IAGIVL
Sbjct: 455 GLSALGMGTLILVIFMAIYYKLFGVVANIALMFNVVLMIGVMSMIPGATMTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R  + V  ++ +G+ RA++TI DSNIT  I  ++LF  G 
Sbjct: 515 TLGMAVDANVLIYERIREELRAGRGVQQAIHLGYERAFATIADSNITTFITALILFAVGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G VRGFA+ + + IL SMFTAI+  RA++  I   +K+K + I
Sbjct: 575 GPVRGFALVLMIGILCSMFTAITGSRAIVNLIWGGRKVKDLSI 617



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 87/205 (42%), Gaps = 6/205 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              Q      +  +   +     I     +GP + +  I  G+  + +  + ++I++ I 
Sbjct: 414 DTTQEAHNLSLLLRSGALTAPIQIVEERTIGPSMGQANIDSGLSALGMGTLILVIFMAIY 473

Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           +K  F + A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V++Y+R+R+
Sbjct: 474 YKL-FGVVANIALMFNVVLMIGVMSMIPGATMTLPGIAGIVLTLGMAVDANVLIYERIRE 532

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++        +  I             +++  FI+ L +   G   +  FA+ +  GI+
Sbjct: 533 ELRA---GRGVQQAIHLGYERAFATIADSNITTFITALILFAVGTGPVRGFALVLMIGIL 589

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKN 830
            +  ++I  +  I+ L     + K+
Sbjct: 590 CSMFTAITGSRAIVNLIWGGRKVKD 614



 Score = 45.1 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++ + +  IG L + PN   +    +  +         G D        ++VD
Sbjct: 4   RYPLWKYLMVAFVVIIGTLYSAPNLYGEDPALQVSAIR-------GHD--------VKVD 48

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D ++  L    I + S     N+I + F ++  +    + VT  L
Sbjct: 49  -----------TLDTVKKSLDTAKISIKSAVLENNQILVRFNNTDDQLQARELVTQAL 95


>gi|261346390|ref|ZP_05974034.1| protein-export membrane protein SecD [Providencia rustigianii DSM
           4541]
 gi|282565708|gb|EFB71243.1| protein-export membrane protein SecD [Providencia rustigianii DSM
           4541]
          Length = 604

 Score =  218 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 153/517 (29%), Positives = 270/517 (52%), Gaps = 35/517 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
            ++  A+    + LGLDLRGG H ++EVD D  +    +   D LR+ L++ GI   S+R
Sbjct: 99  PKWLEALGGEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNMDGLRNDLRQAGIAYSSIR 158

Query: 93  QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +  +  + + F ++  +      +                  +    ++  +  V++   
Sbjct: 159 KGSDYSVEVRFRNADDRSLAEKTLERKY-----------PDLVFSDGSDNTMIAVMTDER 207

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + +  ++A+ Q++ IIR R++Q+G++E  +QR G+ RI+++LPG QD +R +++LG TA 
Sbjct: 208 LREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATAT 267

Query: 212 MSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  +        G          D DG  Y++  +V ++G H+  +T+  D   +
Sbjct: 268 LEFRLVNTSVDSAAAESGRIPGDSEIKYDRDGTPYVLYKRVVLTGDHITDSTSETDENGY 327

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV-----------------LTAPVIN 309
             V        G+        +       + ++ +                  +      
Sbjct: 328 PQVSIGLDSPGGSIMSDFTRDNQDKLMATLFVEYKDSGKKDAAGRAILVKDEKVINAARI 387

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           QA    K +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I +G  A +
Sbjct: 388 QARFGSKFRITGIDNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLKACI 447

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAV 428
           AGL+  +LFMI+ Y K+GL+A  ++  N+++ + ++SLL  ATLT+P IAGIVL + +AV
Sbjct: 448 AGLLASILFMIIYYRKFGLIASSALMANLVMIVGVMSLLPGATLTMPGIAGIVLTLAVAV 507

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  ++L+  G G+++GF
Sbjct: 508 DANVLINERIKEELRNGRSVQQAIHEGYKGAFSSITDANLTTLITAIILYAVGTGSIKGF 567

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 568 AITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 85/205 (41%), Gaps = 5/205 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A       +  +   ++    I     +GP +  + I +G+   I   +A ++++ I 
Sbjct: 401 DNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLKACIAGLLASILFMIIY 460

Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           ++  F L A + L+ ++   +G  +L  G    +  +A ++  +  +V+  V++ +R+++
Sbjct: 461 YR-KFGLIASSALMANLVMIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE 519

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++      S +  I +            ++   I+ + +   G   I  FAI  A G+ 
Sbjct: 520 ELR---NGRSVQQAIHEGYKGAFSSITDANLTTLITAIILYAVGTGSIKGFAITTAIGVA 576

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
            +  ++I     I+  +Y  +  N 
Sbjct: 577 TSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|223040455|ref|ZP_03610729.1| protein-export membrane protein SecF [Campylobacter rectus RM3267]
 gi|222878305|gb|EEF13412.1| protein-export membrane protein SecF [Campylobacter rectus RM3267]
          Length = 323

 Score =  218 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 93/285 (32%), Positives = 160/285 (56%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM  R+  +  S +    S+ L+ T G NYGIDF GG  + V  +  V L  +R+ L 
Sbjct: 10  YNFMGKRYIALAFSAILFFGSLFLIATKGFNYGIDFSGGTLIQVKYDSAVSLDKIRAALA 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             +    +     G    +         ++     +     ++ +      I+ T++VGP
Sbjct: 70  KDEAYKNASVTEFGSAEEVTIRFSGANSNLGSD--VGASVAELLKDTGKFEIRRTDVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ + IS + +LIYI  RF+W FA+ A+ + + D+  T+G  + F I+ N
Sbjct: 128 KVGDELREKGVMALAISLVGILIYIAFRFEWRFAMAAVASEVHDVVITMGAISFFAIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+LT+IGYS+ND ++V+DR+R+N+K  + S     +I++S++ TL R++ TS   
Sbjct: 188 LDTLAAILTVIGYSLNDTIIVFDRIRENIKT-SKSTQLDAIINESVSATLTRTILTSCTT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            I+V+ + ++GG +I  F++ +  GIV+   SSIF+AAP+LL+  
Sbjct: 247 LITVVVLFLFGGDMIHGFSLALIVGIVIGTLSSIFVAAPMLLWFK 291


>gi|284006395|emb|CBA71631.1| protein-export membrane protein [Arsenophonus nasoniae]
          Length = 324

 Score =  218 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 170/301 (56%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L      I FMR  +   GISI   I SI ++   G N+G+DF GG  + +  ++
Sbjct: 7   YTVEQLNHGRKVIDFMRWDYLAFGISIALFILSITVISLKGFNWGLDFTGGTVIEINLSQ 66

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R++L +    +   QNF   ++ ++RL    G    Q     ++     ++  
Sbjct: 67  PADLDKIRASLANNGYREPLIQNFGSSRDIMIRLPPTEG-VAGQEIGKSIISVINKDVDE 125

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +TI+  E VGP +  EL + G + ++ + I +LIY+  RF+W  A GA+ +L  D+  T
Sbjct: 126 QATIKRIEFVGPSVGSELAQTGAMALLAALICILIYVGFRFEWRLAAGAVISLAHDVVIT 185

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE ++T VA+++++IGYS+ND +VV DR+R+N +      S+ ++++ S+ +
Sbjct: 186 LGIVSLFQIEVDMTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIVNVSLTQ 244

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS  + + VL + ++GGS++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 245 TLSRTLITSGTSLLVVLMLYLFGGSILKGFSLVMLIGVTIGTVSSIYVASALALKMGMKR 304

Query: 828 A 828
            
Sbjct: 305 E 305


>gi|30061904|ref|NP_836075.1| preprotein translocase subunit SecF [Shigella flexneri 2a str.
           2457T]
 gi|56479648|ref|NP_706297.2| preprotein translocase subunit SecF [Shigella flexneri 2a str. 301]
 gi|110804431|ref|YP_687951.1| preprotein translocase subunit SecF [Shigella flexneri 5 str. 8401]
 gi|30040148|gb|AAP15881.1| membrane protein [Shigella flexneri 2a str. 2457T]
 gi|56383199|gb|AAN42004.2| membrane protein [Shigella flexneri 2a str. 301]
 gi|110613979|gb|ABF02646.1| protein secretion, membrane protein [Shigella flexneri 5 str. 8401]
 gi|281599741|gb|ADA72725.1| Protein-export membrane protein SecF [Shigella flexneri 2002017]
 gi|313646974|gb|EFS11431.1| protein-export membrane protein SecF [Shigella flexneri 2a str.
           2457T]
 gi|332760689|gb|EGJ90977.1| protein-export membrane protein SecF [Shigella flexneri 4343-70]
 gi|332761718|gb|EGJ91997.1| protein-export membrane protein SecF [Shigella flexneri 2747-71]
 gi|332764286|gb|EGJ94522.1| protein-export membrane protein SecF [Shigella flexneri K-671]
 gi|333007981|gb|EGK27457.1| protein-export membrane protein SecF [Shigella flexneri K-218]
 gi|333022059|gb|EGK41304.1| protein-export membrane protein SecF [Shigella flexneri K-304]
          Length = 323

 Score =  218 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    +++K        
Sbjct: 65  PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALTHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|312880421|ref|ZP_07740221.1| protein translocase subunit secF [Aminomonas paucivorans DSM 12260]
 gi|310783712|gb|EFQ24110.1| protein translocase subunit secF [Aminomonas paucivorans DSM 12260]
          Length = 291

 Score =  218 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 92/292 (31%), Positives = 147/292 (50%), Gaps = 8/292 (2%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM+ R   +GIS    + S+ L+   GLN  +D+ GGI L V     V++  VR  
Sbjct: 7   WHIPFMKYRRLALGISCALMVLSLGLVIAKGLNLSVDYTGGILLQVEFPAAVEVGQVREA 66

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L  +  G  + Q +                        + V   + +      +   E V
Sbjct: 67  LAGVGQGQATIQAYSDRG-------VIVRFQSQSGENRKQVLGALGQRFGKIQVLRLETV 119

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  EL ++  V +I++   +L Y+  RF++ F + AI +L+ D+   LG ++L G E
Sbjct: 120 GPVVGEELRQQAFVALILALGGILAYMAFRFQFRFGMAAIFSLLHDVILMLGVYSLTGKE 179

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             ++ +AA+LT++GYS+ND +VV DR+R+N K         DL+D+S+N+TL R++ TS+
Sbjct: 180 VGVSFIAAILTVVGYSLNDSIVVLDRVRENWKEL-RGKGIVDLVDESVNQTLSRTINTSL 238

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              + VL M   GG VI +FA     GI V   SSI+IA+ ++   Y    K
Sbjct: 239 TTLLPVLAMYFLGGEVISNFAFAFLVGITVGTYSSIYIASAVVAEWYLRSPK 290


>gi|126739015|ref|ZP_01754709.1| protein-export membrane protein SecF [Roseobacter sp. SK209-2-6]
 gi|126719632|gb|EBA16340.1| protein-export membrane protein SecF [Roseobacter sp. SK209-2-6]
          Length = 322

 Score =  218 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 109/310 (35%), Positives = 172/310 (55%), Gaps = 7/310 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P      F       VG S L  + S+      GLN+GIDF+GG  +   + + 
Sbjct: 1   MRLRLVPKETRFDFFSKWKVWVGFSALLMVLSLVSFGLQGLNFGIDFRGGTTVRTESTQA 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNF------LVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD+   R  +  L +GDIS                ++R+Q Q         V+  ++  +
Sbjct: 61  VDVGAYRDAMAPLGLGDISITEVFDPTFEEDQHVAMIRIQAQESGEAISGEVIGKLQAAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
               P     + E VGPK+S EL++  I+ V ++  A+LIYIW+RF+W FALGA+  L+ 
Sbjct: 121 DTAAPGIKFVSVESVGPKVSGELVQTAILAVALAIAAVLIYIWLRFEWQFALGAVAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I+F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y       ++++
Sbjct: 181 DVVLTIGIFSALQIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRYKKKA-LDEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINETL R+V TS+   ++++ + V GG VI  F   M +G+VV   SSIF+A+ ILL 
Sbjct: 240 LSINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVVVGTYSSIFVASTILLR 299

Query: 823 IYDWRAKNAR 832
           +   R  + +
Sbjct: 300 LGVKRDWSKK 309


>gi|150390113|ref|YP_001320162.1| protein-export membrane protein SecF [Alkaliphilus metalliredigens
           QYMF]
 gi|149949975|gb|ABR48503.1| protein-export membrane protein SecF [Alkaliphilus metalliredigens
           QYMF]
          Length = 297

 Score =  218 bits (553), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 143/284 (50%), Gaps = 4/284 (1%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            +     IS    I  + L    G+N GIDF GG  + +     V    +R   +    G
Sbjct: 6   NKKIWFSISAAVIILGLVLGLARGINVGIDFTGGTLMEIELYEYVSTDEIREITDQYDPG 65

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                  +      +R      D   Q R+    + K    +P +        GP + RE
Sbjct: 66  ASINHLGNERTTIQIRT---IEDYNNQERMEIFNQFKAEYDLPDNEPSYASQFGPSVGRE 122

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           +  + ++ V+ISA+ ML YI  RF+  F L AIT L+ D+   L  +++  I  N   VA
Sbjct: 123 IQNRAMLAVVISALGMLAYITYRFELTFGLAAITALVHDVLIVLAVYSILRIPVNSPFVA 182

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +VV+DR+R+N+  +    +F  + + SI++T+ RS+ TS+   ++++
Sbjct: 183 AILTILGYSINDTIVVFDRVRENV-KHMKKSNFAQVANDSISQTVVRSINTSVTTLVTIV 241

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + V G S I  FA+P+  G++    SSIFIA+P+ + + + + 
Sbjct: 242 ALYVLGVSQIREFALPLIAGVISGTYSSIFIASPVWVMLKERQK 285


>gi|89072683|ref|ZP_01159248.1| protein export protein SecF [Photobacterium sp. SKA34]
 gi|89051503|gb|EAR56957.1| protein export protein SecF [Photobacterium sp. SKA34]
          Length = 315

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 167/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L+     + FMR   +    S++  + SI  + T GLN+G+DF GG  + V   +P 
Sbjct: 1   MRELLNANKVVDFMRWSKFAFIFSLIMIMGSIATISTKGLNWGLDFTGGTLIEVSFEKPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L ++R +LE    GD   QNF   ++ +VRLQ + G    +    +++           
Sbjct: 61  NLPLIRESLEKAGFGDAVVQNFGTARDVMVRLQPREG-VKGEVLGNQILDALKDGTAQSV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + ++I+ + +L+Y+ +RF+W  A GA+ +L  DI  T+G
Sbjct: 120 EMRRIEFVGPNVGDELAEAGGMAILIALLCILLYVSLRFEWRLAAGAVLSLAHDIIITVG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  +E +LT VAA+LT++GYS+ND +VV+DR+R+N +      S  ++++ SI++TL
Sbjct: 180 IFSVLQVEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKG-SPAEIMNSSISQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ +   GGS+I  FA+ +  GI +   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFAQGGSMIHGFALALLIGITIGTYSSIYVASALALKLGITRE 297


>gi|217978988|ref|YP_002363135.1| protein-export membrane protein SecF [Methylocella silvestris BL2]
 gi|217504364|gb|ACK51773.1| protein-export membrane protein SecF [Methylocella silvestris BL2]
          Length = 318

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 178/302 (58%), Gaps = 2/302 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L P+     FMR R      S + SI S+ L  T G+N+GIDF GG  + + A  
Sbjct: 1   MKLLRLAPENTKFPFMRFRRISYPFSAVMSIISVVLFLTLGMNFGIDFSGGTLVELRAKS 60

Query: 588 PV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D++ +R+  E++ +G++  Q F    +  +R   Q  +          + +    + 
Sbjct: 61  GAADIAQLRAIAENMHVGEVEVQGFGQPSDVTLRFGVQHSEQGDAAAQEAAIARVKDAVG 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                +  E+VGP++S EL++ G +GV+++ +A+L Y+W RF+W FA+GAI   + D+  
Sbjct: 121 NDYEFRRVEVVGPRVSGELVQSGTLGVVVAIVAVLCYLWFRFEWQFAVGAIIATMHDLLL 180

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+GFF+L  +EFN T++AA+LT++GYS+N+ VVV DR+R+ M+ Y   +   +LID S+N
Sbjct: 181 TVGFFSLTRLEFNTTSIAAILTIVGYSLNETVVVLDRIREMMRKYRK-MPTDELIDLSVN 239

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             L R++ T+   F+++L + V+GG VI SF+I M +GI VA  SS+FI +P+L+++   
Sbjct: 240 AVLPRTIMTATTVFLALLSLVVFGGQVIRSFSIAMIWGIFVATYSSVFICSPMLIYLGLR 299

Query: 827 RA 828
             
Sbjct: 300 NE 301


>gi|257094092|ref|YP_003167733.1| preprotein translocase subunit SecD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046616|gb|ACV35804.1| protein-export membrane protein SecD [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 625

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 180/517 (34%), Positives = 278/517 (53%), Gaps = 27/517 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL + P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 105 VVALNLLSSSPQWLTNLHA---------LPMYLGLDLRGGVHFLLQVDMKGALTKRLDSI 155

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           S +LRS L+ + +    + +   ++T+ F D   +      +       +  L    +  
Sbjct: 156 SGDLRSLLRDKNVRHAGITREGERLTIRFRDGDTRAKARIVLED--NQSDLLLADQGE-- 211

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                 + ++   L    I ++   A++Q+M  +  RI+++G++E  I + G+ RI++QL
Sbjct: 212 ----GDDLKLVATLKPEAIKRIQEFAVKQNMTTLSNRINELGVAEPVIAQQGADRIVVQL 267

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNN------SKKGFMFGVRFLRDSDGNQYLVEDKV 247
           PG QD ++ + +LG TA +    V                FG     +  G   LV  +V
Sbjct: 268 PGVQDTAKAKDILGRTATLEIRMVEETAGALEAAQAGQVPFGTELYVERGGLPLLVRKQV 327

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VL 303
            ++G  L  A   FD +TH+P V ++ D  GAR F +VTRDN+GK +A+VL  +    V+
Sbjct: 328 VLTGDRLTDAQPGFDNQTHEPAVHLTLDSAGARIFKDVTRDNVGKRMAIVLIEKGKGEVV 387

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           TAPVI   I  G+ QISG  +   A   A +LRAGSL   + I+EER +G  LG+++I K
Sbjct: 388 TAPVIRAEIGGGRVQISGRMSTMEANDTALLLRAGSLAAPMEIIEERAIGPSLGAENIKK 447

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  + + G   I +FMI  Y  +GLV+  ++  N++  +ALLSLL ATLTLP IA I L 
Sbjct: 448 GFHSTMWGFAAIAVFMIAYYVLFGLVSVIALAANLLFLVALLSLLQATLTLPGIAAIALA 507

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+A+D+N+L+NERIREE R   +   ++  G+ RA+ TI DSNIT LIA + L  FG G
Sbjct: 508 LGMAIDANVLINERIREELRNGSTPQLAIHTGYERAFGTILDSNITTLIAGIALLIFGSG 567

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            VRGFA+   L IL S+F+A+ + RA++  I   ++ 
Sbjct: 568 PVRGFAVVHCLGILTSLFSAVVVSRALINLIYGNRRK 604



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 85/208 (40%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  E I+KG    +    A+ 
Sbjct: 401 VQISGRMSTMEANDTALLLRAGSLAAPMEIIEERAIGPSLGAENIKKGFHSTMWGFAAIA 460

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++   +   F L ++  L  ++   +   +L      L  +AA+   +G +++  V++ 
Sbjct: 461 VFMIAYY-VLFGLVSVIALAANLLFLVALLSLLQATLTLPGIAAIALALGMAIDANVLIN 519

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      + +  I        G  + +++   I+ + + ++G   +  FA+  
Sbjct: 520 ERIREELR---NGSTPQLAIHTGYERAFGTILDSNITTLIAGIALLIFGSGPVRGFAVVH 576

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  S++ ++  ++  IY  R K
Sbjct: 577 CLGILTSLFSAVVVSRALINLIYGNRRK 604



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 25/120 (20%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L ++   +GL+  LPNF  +S                           ++V 
Sbjct: 3   RYPLWKYVLVAIALVLGLVYTLPNFFGESPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                    +   + + S L+   I    +    N + +   ++  +    D +      
Sbjct: 38  SAKATLKVDEKTRERVASTLRSASIENSGIFLDSNGVKVRLLNADSQLQAKDLLEKQFNP 97


>gi|296314980|ref|ZP_06864921.1| protein-export membrane protein SecD [Neisseria polysaccharea ATCC
           43768]
 gi|296838181|gb|EFH22119.1| protein-export membrane protein SecD [Neisseria polysaccharea ATCC
           43768]
          Length = 617

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 167/506 (33%), Positives = 278/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQTENSLTIPLQDAGDVQKALPQLRRLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K         L                L+  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPAKLREALEGNVLSGYELLSSGGDRPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSTNILFLIGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSTNILFLIGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L +    +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIAFTIVVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         ++ + LK+ GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------DQTQSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDIIENTL 95


>gi|255321489|ref|ZP_05362647.1| protein-export membrane protein SecF [Campylobacter showae RM3277]
 gi|255301345|gb|EET80604.1| protein-export membrane protein SecF [Campylobacter showae RM3277]
          Length = 323

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 162/285 (56%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM  R+  +GIS +    S+ L+ T G NYGIDF GG  + V  +  V L  +R+ L 
Sbjct: 10  YDFMSKRYIALGISAVLFFGSLFLMATKGFNYGIDFSGGTLIQVKYDSAVSLDKIRAALA 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             +    +     G    +         ++     +     ++ +      I+ T++VGP
Sbjct: 70  KNEAYKNASVTEFGSAEEVTIRFSGASSNLGSD--VGASVAELLKDTGKFEIRRTDVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ + IS + +LIYI  RF+W FA+ A+ + I D+  T+G  + F I+ N
Sbjct: 128 KVGDELREKGVMALAISLVGILIYIAFRFEWRFAMAAVASEIHDVVITMGAISFFAIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+LT++GYS+ND ++V+DR+R+N+K  + S     +I++S++ TL R++ TS   
Sbjct: 188 LDTLAAILTVVGYSLNDTIIVFDRIRENIKT-SKSTHLDTIINESVSATLTRTILTSGTT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            I+V+ + ++GG +I  F++ +  GIV+   SSIF+AAP+LL+  
Sbjct: 247 LITVVVLFLFGGDMIHGFSLALIVGIVIGTLSSIFVAAPMLLWFK 291


>gi|296446020|ref|ZP_06887970.1| protein-export membrane protein SecF [Methylosinus trichosporium
           OB3b]
 gi|296256538|gb|EFH03615.1| protein-export membrane protein SecF [Methylosinus trichosporium
           OB3b]
          Length = 322

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 113/306 (36%), Positives = 187/306 (61%), Gaps = 5/306 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L P+     FMR R      S + SI S+ L   HG+N+GIDF GG  + V A  
Sbjct: 1   MKLLRLAPENTKFPFMRFRRVSYPFSAVLSIASVLLFILHGMNFGIDFAGGTVIEVRAKS 60

Query: 588 -PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              +++ +R  +E+L +GD+  Q F  E +  +R   Q G   AQ   +E V+  +    
Sbjct: 61  GHAEMATLRKTVETLALGDVEVQAFGNEADATLRFGLQDGGDAAQQAAVEKVRSAV---G 117

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               ++  E+VGP++S EL++ G +GV++S +A+L Y+W RF+W FA+GA+   + D+  
Sbjct: 118 GDYDLRRVEVVGPRVSGELVQSGTLGVVLSIVAVLTYLWFRFEWQFAIGAVIATMHDLLL 177

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+GFF++  +EFN T++AA+LT++GYS+N+ VVV DR+R+ M+ Y   +    +ID SIN
Sbjct: 178 TVGFFSITQLEFNTTSIAAILTIVGYSLNETVVVLDRIREMMRKY-KKMPTDQMIDLSIN 236

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             L R++ T+   F+++L +A++GG VI SF++ M +GI VA  SS+FI +P+L+++   
Sbjct: 237 AVLPRTIMTATTVFLALLSLAIFGGHVIRSFSLAMIWGIFVATYSSVFICSPMLIYLGLR 296

Query: 827 RAKNAR 832
             +N +
Sbjct: 297 SDENDK 302


>gi|57237974|ref|YP_179223.1| preprotein translocase subunit SecF [Campylobacter jejuni RM1221]
 gi|86150822|ref|ZP_01069038.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86153179|ref|ZP_01071384.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613248|ref|YP_001000770.1| preprotein translocase subunit SecF [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|148926008|ref|ZP_01809694.1| protein-export membrane protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157415353|ref|YP_001482609.1| preprotein translocase subunit SecF [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|167005686|ref|ZP_02271444.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|205355839|ref|ZP_03222608.1| protein export membrane protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|57166778|gb|AAW35557.1| protein-export membrane protein SecF [Campylobacter jejuni RM1221]
 gi|85841992|gb|EAQ59238.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85844064|gb|EAQ61274.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249301|gb|EAQ72262.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|145845487|gb|EDK22579.1| protein-export membrane protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|157386317|gb|ABV52632.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|205346273|gb|EDZ32907.1| protein export membrane protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|307747994|gb|ADN91264.1| Protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315058533|gb|ADT72862.1| Protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni S3]
 gi|315932230|gb|EFV11173.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 323

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 155/285 (54%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR RF  + +S +    SI LL+  GL YGIDF GG  + +       ++ +R  LE
Sbjct: 10  YDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                        G    +       G +   +  +      + +      ++  ++VGP
Sbjct: 70  KQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ + +S IA+LIYI +RF+W FAL AI + I D+  TLG  +LF I+ N
Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVLT++GYS+ND ++++DR+R+ +K  +       +I++S++ TL R+V TS   
Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSRTVLTSGLT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +V+ +  +GG +I  F++ +  GI+    SSIF+A+P LL+  
Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPTLLWFK 291


>gi|332992257|gb|AEF02312.1| preprotein translocase subunit SecD [Alteromonas sp. SN2]
          Length = 615

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 165/523 (31%), Positives = 280/523 (53%), Gaps = 38/523 (7%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N  P +    +   +    + LGLDLRGG H ++EVD  + +   L+      R+
Sbjct: 99  YFVAMNLAPDTP--EWLEGLGGTPMKLGLDLRGGVHFLMEVDMTEVITKSLEDAESGFRT 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++EGI    + Q ++ + ++F D    +     +               +   L  T 
Sbjct: 157 SLREEGIRYRGVTQKEDYVEITFRDEETLDKAEFFLRN-----------QNRDLTLNQTD 205

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           +  +  V S+  + ++  +A++Q++ IIR R++Q+G++E  +Q+ G+ RI++QLPG QD 
Sbjct: 206 DLVLRAVFSEAKLQEIRENAVKQNITIIRNRVNQLGVAEPLVQKQGADRIVVQLPGIQDT 265

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           +R +++L  TA + F  V   N  +         G + + D  G   L+E ++ ++G H+
Sbjct: 266 ARAKEILNATATLEFRMVDQKNDVRDAISGRVPAGSQVIEDQQGIPQLLEKRIMLTGSHI 325

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------- 301
                +   +   P V+IS D  G  +    TR NIGKP+A V                 
Sbjct: 326 ID-ANSGVDEYGLPNVNISLDSEGGNKMSRSTRGNIGKPMATVFIEYKSNGERNKDDKLI 384

Query: 302 -----VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +    +A    K QI+G  + + A  LA +LRAG+L   + IVEER VG  L
Sbjct: 385 FEKHEQVISVATIRAQLGSKFQITGLDSPKEARDLALLLRAGALIAPIQIVEERTVGPSL 444

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415
           G ++I  GT AIV GL+ +++FM++ Y  +G+VA+ ++  N+++ + ++S++  ATLTLP
Sbjct: 445 GKENIELGTQAIVYGLLAVLVFMLIYYKAFGIVANIALITNLVMIVGIMSMIPGATLTLP 504

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            +AGIVL +G+AVD+N+L+ ERIREE R  +S   ++  G+  A+STI D+NIT  IA +
Sbjct: 505 GMAGIVLTVGMAVDANVLIFERIREEIRDGRSPQQAIHHGYDSAFSTILDANITTFIAGL 564

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           +LF  G G ++GF+IT+ + I  SMFTAI + R ++  +   +
Sbjct: 565 ILFAVGTGPIKGFSITLMIGIATSMFTAILLTRVIVNAVWGGR 607



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 91/207 (43%), Gaps = 5/207 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  +   ++    I     VGP + +E I  G   ++   +A+L+++ I 
Sbjct: 411 DSPKEARDLALLLRAGALIAPIQIVEERTVGPSLGKENIELGTQAIVYGLLAVLVFMLIY 470

Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           +K  F + A   LI ++   +G  ++  G    L  +A ++  +G +V+  V++++R+R+
Sbjct: 471 YK-AFGIVANIALITNLVMIVGIMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIRE 529

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++      S +  I    +      +  ++  FI+ L +   G   I  F+I +  GI 
Sbjct: 530 EIRD---GRSPQQAIHHGYDSAFSTILDANITTFIAGLILFAVGTGPIKGFSITLMIGIA 586

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I +   I+  ++  R    ++
Sbjct: 587 TSMFTAILLTRVIVNAVWGGRRNVQKL 613


>gi|227358140|ref|ZP_03842481.1| protein-export membrane protein SecD [Proteus mirabilis ATCC 29906]
 gi|227161476|gb|EEI46513.1| protein-export membrane protein SecD [Proteus mirabilis ATCC 29906]
          Length = 604

 Score =  217 bits (552), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 162/524 (30%), Positives = 274/524 (52%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD +  +    +   D LR+ L+ EGI
Sbjct: 93  NLAPATPKWLEAIGGEPMKLGLDLRGGVHFLMEVDMETALGKLQEQNVDSLRTLLRDEGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+R+  N  + + F ++  +   +D +               +  +        +  
Sbjct: 153 PYSSIRKTDNYGVEIRFRNADDRSKASDYLARR-----------NQDLIFRNGDNNSLKA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           + +   +    ++A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 IFTDERLRDARTYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N        G            DG   ++  +V ++G H+  +T+ 
Sbjct: 262 LGATATLEFRLVNTNVDPSALETGRIPGDSEVKYTRDGRPTILYKRVVLTGDHITDSTSQ 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D    +P V IS D  G       T+DN+GKP+A +      +                
Sbjct: 322 ADEYG-QPQVSISLDSAGGSIMSNFTKDNVGKPMATLFVEYKDSGKRDENDRAILVKNEE 380

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q       +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINVANIQTRLGNNFRITGISNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIT 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GL+  V FMI+ Y K+G++A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 441 QGLEACLWGLIASVAFMIIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  V+L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIIDANLTTLITAVILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT  + +  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 604



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D      N  ++ + +    N    +  L       G S A       +  +   
Sbjct: 358 FVEYKDSGKRDENDRAILVKNEEVINVANIQTRLGNNFRITGISNANEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA + ++ I ++  F + A T L+ ++
Sbjct: 418 LIAPIQIVEERTIGPTLGLQNITQGLEACLWGLIASVAFMIIYYR-KFGVIASTALLANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +
Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    +  ++   I+ + +   G   I  FAI  A G+  +  ++I     I+  +
Sbjct: 534 GYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLL 593

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 594 YGGKRIKK 601


>gi|296161043|ref|ZP_06843854.1| protein-export membrane protein SecD [Burkholderia sp. Ch1-1]
 gi|295888742|gb|EFG68549.1| protein-export membrane protein SecD [Burkholderia sp. Ch1-1]
          Length = 692

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 163/517 (31%), Positives = 269/517 (52%), Gaps = 24/517 (4%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            I  + L  A P +L                + LGLDLRGG H +L+VD    +N  L  
Sbjct: 108 FIVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDS 158

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            + + R+ L+   I    + ++   + ++FAD    +N + ++   +  +          
Sbjct: 159 DASDARTLLRDNNIRDGGVNRVNQTVVINFADQATADNASKQLGRSISELQW-------A 211

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
           +        ++    +      V   A++Q++  +  R++++G++E  IQ+ GS RI+++
Sbjct: 212 SQTSPDGGVQLVGTFTPTVQRAVQDAALKQNITTLHNRVNELGVAEPVIQQQGSDRIVVE 271

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           LPG QD ++ + ++G TA +      P     N       G       +    L+  ++ 
Sbjct: 272 LPGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQII 331

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +  
Sbjct: 332 FTGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVASVSRDNIGKPMAMVLFEKGKGEVLT 390

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I KG 
Sbjct: 391 VATIQSELGDRFQITGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRKGF 450

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            ++V G   I +FMI  Y  +G+++   + +N++L +A+LS+L ATLTLP IA I L +G
Sbjct: 451 HSVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALG 510

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NER+REE R       ++  G++ A++TI DSN+T LIA + L  FG G V
Sbjct: 511 MAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGIALLAFGSGPV 570

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           RGFAI   + IL SMF+A+   R ++      KK   
Sbjct: 571 RGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 80/185 (43%), Gaps = 4/185 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + IRKG   V+    A+ +++   +   F + ++  L +++   +
Sbjct: 429 MDIIEERTIGPSLGADNIRKGFHSVVWGFAAIAVFMIAYY-MLFGVISMIGLSVNLLLLI 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++        +  I       
Sbjct: 488 AVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGAPPQLAIQNGYAHA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ + +  +G   +  FAI    GI+ +  S++F +  I+   Y  + 
Sbjct: 545 WATILDSNVTTLIAGIALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKK 604

Query: 829 KNARI 833
           K   +
Sbjct: 605 KLKSL 609



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 31/123 (25%), Gaps = 29/123 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   IGL+  LPN   ++                           ++V 
Sbjct: 3   RYPLWKYAVMLVALVIGLVYTLPNLFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                          + + L    I    +    +     I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDSTTLSAVEAALAANQIKPDDVTFDNSATNANIRVRLPDTDTQLRVKDLLQK 97

Query: 118 FLQ 120
            L 
Sbjct: 98  SLN 100


>gi|157825289|ref|YP_001493009.1| preprotein translocase subunit SecF [Rickettsia akari str.
           Hartford]
 gi|166977666|sp|A8GM76|SECF_RICAH RecName: Full=Protein-export membrane protein secF
 gi|157799247|gb|ABV74501.1| preprotein translocase subunit SecF [Rickettsia akari str.
           Hartford]
          Length = 308

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 175/306 (57%), Gaps = 2/306 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+P+ I   FM  +      SI+ S+ S   +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRLLPNKIDFDFMNFKAVSYSFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R  L  L IG++  QNF  E++  +R      +      +  +     +  
Sbjct: 61  DQAPDLPKMRGVLGELGIGEVVLQNFGSERDLSIRFGISS-EENLMKNIELIKASLQSSF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S +A+++YIW+RF+WYF LG +  L+ D+ 
Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGAMAMLSSFLAIMVYIWVRFEWYFGLGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ SI
Sbjct: 180 LALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    +
Sbjct: 239 NETLSRTILTVITTLLANLALMLFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFAN 298

Query: 826 WRAKNA 831
            +  N 
Sbjct: 299 RKFNNK 304


>gi|303327876|ref|ZP_07358316.1| protein-export membrane protein SecD [Desulfovibrio sp. 3_1_syn3]
 gi|302862237|gb|EFL85171.1| protein-export membrane protein SecD [Desulfovibrio sp. 3_1_syn3]
          Length = 526

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 195/531 (36%), Positives = 288/531 (54%), Gaps = 18/531 (3%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W + +  ++    L+ ALP+     +       +P ++I+LGLDL+GG HL L VD   
Sbjct: 4   RWRLSIAIVVFLACLVYALPSL--PGIGTALERFLPSSKINLGLDLKGGIHLTLGVDVAK 61

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V+  L +   +LR   + E + V   R +     L F   R +    DK+   L     
Sbjct: 62  AVSNSLALAGQDLRRLAQDEKVVVLRPRVVGGT-ALEFVLPRAENE--DKLKEILSRHFP 118

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +L  D        + +       +   + ++ + A++Q++  IR RIDQ G++E  I++ 
Sbjct: 119 QL--DVGTPHKGESGQLRYVAHFTAAEVTRLENMALDQALRTIRNRIDQFGVAEPDIRKQ 176

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL----------PNNSKKGFMFGVRFLR 234
             +RI +QLPG  DP R  Q++G TA + FH V           P       +       
Sbjct: 177 AGNRIQVQLPGISDPRRAVQIIGQTAHLEFHLVRDDVDPGKAVLPTGVVSLPLLENTPGG 236

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
               +Q  VE    ++G  +  A   FD       V ++F+  GAR F   T +N+G+ +
Sbjct: 237 QKKESQIAVEKDAMLTGEDVADARPAFDQMNK-AYVTLNFNARGARIFERATTENVGRRM 295

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A+VLDG+V +APVI + I  G+A ISGNFT   A  LA +LRAGSLP  ++++EER+VG 
Sbjct: 296 AIVLDGKVYSAPVIRERIGGGRASISGNFTTAEAQDLAIVLRAGSLPAPVSVLEERSVGP 355

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG +SI  G  A + G   +VLFM V YG  GL+AD  +   +++ +A ++  GATLTL
Sbjct: 356 SLGQESIDSGVRAALVGAAAVVLFMAVYYGLSGLIADGMLCFTMLMVMAGMAAFGATLTL 415

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL IG+AVD+N+L+ ERIREE R   S   ++  GF RA  +I DSN+T +IAT
Sbjct: 416 PGIAGIVLTIGMAVDANVLIYERIREELRLGLSPLAAVKAGFDRAAISITDSNLTTIIAT 475

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           V+L+ FG G +RGFA+T+ L I+ SMFTAI + RA+     R+   K I I
Sbjct: 476 VILYQFGTGPIRGFAVTLSLGIIASMFTAIFVSRAIFEEWARHCGPKGISI 526



 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 80/170 (47%), Gaps = 4/170 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + +E I  G+   ++ A A+++++ + +     L A   L   +   +   A FG
Sbjct: 352 SVGPSLGQESIDSGVRAALVGAAAVVLFMAVYYGLS-GLIADGMLCFTMLMVMAGMAAFG 410

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++Y+R+R+ ++L    +S    +    +        +
Sbjct: 411 ATLTLPGIAGIVLTIGMAVDANVLIYERIREELRL---GLSPLAAVKAGFDRAAISITDS 467

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++   I+ + +  +G   I  FA+ ++ GI+ +  ++IF++  I      
Sbjct: 468 NLTTIIATVILYQFGTGPIRGFAVTLSLGIIASMFTAIFVSRAIFEEWAR 517


>gi|268592077|ref|ZP_06126298.1| protein-export membrane protein SecD [Providencia rettgeri DSM
           1131]
 gi|291312472|gb|EFE52925.1| protein-export membrane protein SecD [Providencia rettgeri DSM
           1131]
          Length = 604

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 162/524 (30%), Positives = 278/524 (53%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LR+ L++EGI
Sbjct: 93  NLAPATPKWLEAIGGEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNMDGLRNDLRQEGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+R+  +  + + F ++  +      ++                 +    ++  +  
Sbjct: 153 AYSSIRKGNDYSVEVRFRNADDRSQAEKALSRKY-----------PDLVFSDGSDNTMIA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +  ++A+ Q++ IIR R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDERLREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  +        G          D +G  Y++  +V ++G H+  +T+ 
Sbjct: 262 LGATATLEFRLVNTSVDSSAAESGRVPGDSEVKYDREGMPYVLYKRVILTGDHITDSTSE 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------------V 302
            D    +P V IS D  G     + TRDN  K +A +                       
Sbjct: 322 ADENG-QPQVSISLDSAGGSIMSDFTRDNQDKLMATLFVEYKDSGKKDATGRSILVKDEK 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       A    K +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINAARISARFGSKFRITGITNGTEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL+  +LFMI+ Y K+GL+A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 441 QGLKACIAGLLASILFMIIYYRKFGLIASSALLANLVLIVGVMSLLPGATLTMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE +  +SV  ++  G+  A+S+I D+N+T LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELKNGRSVQQAIHEGYKGAFSSITDANLTTLITAIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 561 TGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 79/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   I   +A ++++ I ++  F L A + L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIEQGLKACIAGLLASILFMIIYYR-KFGLIASSALLANLVLIVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +K      S +  I +           
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSVQQAIHEGYKGAFSSITD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+  +  ++I     I+  +Y  +  N 
Sbjct: 545 ANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|82775686|ref|YP_402033.1| preprotein translocase subunit SecF [Shigella dysenteriae Sd197]
 gi|81239834|gb|ABB60544.1| protein secretion, membrane protein [Shigella dysenteriae Sd197]
          Length = 323

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 164/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  I +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    +++K        
Sbjct: 65  PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMTALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|157964178|ref|YP_001499002.1| preprotein translocase subunit SecF [Rickettsia massiliae MTU5]
 gi|157843954|gb|ABV84455.1| Protein-export membrane protein secF [Rickettsia massiliae MTU5]
          Length = 310

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 105/307 (34%), Positives = 175/307 (57%), Gaps = 2/307 (0%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           I  +    L+P+ I   FM  +      SI+ S+ S   +  +  N+GIDF GGI + V 
Sbjct: 2   IMQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISFIWIGIYKFNFGIDFAGGIVIEVR 61

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            ++  DL  +R  L  L IG++  QNF  E++  +R      +      +  +     + 
Sbjct: 62  LDQAPDLPKMRGVLGKLGIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIELIKASLQSN 120

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                  +  + VGP++ R+LI  G + ++ S +A+++YIW+RF+WYF LG +  L+ D+
Sbjct: 121 FPYKFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIWVRFEWYFGLGILIALVHDV 180

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ S
Sbjct: 181 ILALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLS 239

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           INETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    
Sbjct: 240 INETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMFV 299

Query: 825 DWRAKNA 831
           + +    
Sbjct: 300 NRKFNKK 306


>gi|313673203|ref|YP_004051314.1| protein translocase subunit secf [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312939959|gb|ADR19151.1| protein translocase subunit secF [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 304

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 114/304 (37%), Positives = 175/304 (57%), Gaps = 1/304 (0%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 LI +   I F+        IS +  + S+ L+FT GLN GIDF GG  + +   
Sbjct: 1   MAQFLELIKNDSNIDFLGKAKLFFIISGVLIVISLFLIFTKGLNLGIDFSGGTVIQLKYE 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +P DL+ +R  + +L+IGD+S QNF   +  L+RL       + +       K    +  
Sbjct: 61  KPADLNKLRQGIGNLKIGDVSIQNFGNPEEVLIRLGKTRDIPLEELSKTIRAKLAEIDPN 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               ++  E VGP++  EL  K ++ ++ + I +LIY+ IRF+  FA+GAI  L+ D+  
Sbjct: 121 NKFIVERVEQVGPQVGSELQYKAMMALLYANIGVLIYVAIRFELIFAIGAILALVHDVII 180

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSI 765
           TLGF +L   EFNLT VAA+L LIGYS+ND +VV+DR+R+ +K      I+ +D+++KSI
Sbjct: 181 TLGFLSLTSKEFNLTVVAALLALIGYSLNDTIVVFDRIRERIKATANEKINIKDIMNKSI 240

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ TS+  F +VL + ++GG VI  FA  +  GI+V   SSI IA+ ++  I  
Sbjct: 241 NETLSRTIITSLLTFFTVLSLMIFGGEVINPFAFTLVIGIIVGTYSSIGIASGLVYLIKS 300

Query: 826 WRAK 829
            R +
Sbjct: 301 LRKR 304


>gi|268317010|ref|YP_003290729.1| protein-export membrane protein SecF [Rhodothermus marinus DSM
           4252]
 gi|262334544|gb|ACY48341.1| protein-export membrane protein SecF [Rhodothermus marinus DSM
           4252]
          Length = 308

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 94/296 (31%), Positives = 167/296 (56%), Gaps = 10/296 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I +     F++ R      S +  + S+  L T GL  GIDFKGG++  +   R    
Sbjct: 1   MRIFENANYPFVQHRKKAYVFSGVLILLSLVSLVTRGLELGIDFKGGMEFIISGAREPGA 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + +R  L  +   +   + +  E + L+R+  +   +  Q R++E ++++  E  P   +
Sbjct: 61  TAIREALTPVLGTEPEVKTYGAE-DILIRVAAEGDINEVQRRIVETIRQRFPETQPE--V 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T IVGP+ + +L R  I  ++ + + + +YI IRF+W F+LGA+  L  D+  TLG F
Sbjct: 118 VQTNIVGPRFAEDLKRGAIYSILGALLVIFVYILIRFEWRFSLGAVVALFHDVLITLGLF 177

Query: 712 AL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
           +L      F +E + T +AA LT++GYS+ND VVV+DR+R+ M ++  +  F ++++ SI
Sbjct: 178 SLLHGWLPFSLEIDQTIIAAFLTIVGYSLNDTVVVFDRIREYMNIF-KTKPFEEVVNLSI 236

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           N TL R++ TS    + V+ + ++GG V+  F+  +  GIV+   SSIF+A+P+++
Sbjct: 237 NTTLSRTIITSGTTLLVVVILFIFGGEVLRGFSFALIVGIVIGTYSSIFVASPVVI 292


>gi|116620402|ref|YP_822558.1| protein translocase subunit secF [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223564|gb|ABJ82273.1| protein translocase subunit secF [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 410

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 70/192 (36%), Positives = 122/192 (63%), Gaps = 1/192 (0%)

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K    +    +  T++VGPK+  EL  K ++  + +   ML+YI  RF+W + LGA+  +
Sbjct: 198 KQESYLAPYKVIQTQMVGPKVGVELRTKAVLATLYALAGMLVYIAFRFEWIYGLGAVIAV 257

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             D   T+G F++F  E ++T +AA+LTL+GYS+ND +V++DR+R+N+K+         L
Sbjct: 258 FHDTLITIGLFSIFHEEISMTVIAALLTLVGYSMNDTIVIFDRIRENLKIM-RREPLESL 316

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++KS+N+TL R++ TS   F++V+ + +WGG V+  F+  +  GI+V   SS+FIA+PI+
Sbjct: 317 MNKSVNQTLSRTIMTSGLTFLTVIALFIWGGPVLHGFSFALVCGIIVGTYSSVFIASPIV 376

Query: 821 LFIYDWRAKNAR 832
           LF +++     +
Sbjct: 377 LFWHNYTDSRRK 388


>gi|88596212|ref|ZP_01099449.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562706|ref|YP_002344485.1| preprotein translocase subunit SecF [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|88191053|gb|EAQ95025.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360412|emb|CAL35209.1| protein-export membrane protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284926321|gb|ADC28673.1| preprotein translocase subunit SecF [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315929924|gb|EFV09082.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 323

 Score =  217 bits (552), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 156/285 (54%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR RF  + +S +    SI LL+  GL YGIDF GG  + +       ++ +R  LE
Sbjct: 10  YDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +            G    +       G +   +  +      + +      ++  ++VGP
Sbjct: 70  NQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ + +S IA+LIYI +RF+W FAL AI + I D+  TLG  +LF I+ N
Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVLT++GYS+ND ++++DR+R+ +K  +       +I++S++ TL R+V TS   
Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSRTVLTSGLT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +V+ +  +GG +I  F++ +  GI+    SSIF+A+P LL+  
Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPTLLWFK 291


>gi|189425067|ref|YP_001952244.1| preprotein translocase subunit SecF [Geobacter lovleyi SZ]
 gi|189421326|gb|ACD95724.1| protein-export membrane protein SecF [Geobacter lovleyi SZ]
          Length = 313

 Score =  217 bits (552), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 94/297 (31%), Positives = 146/297 (49%), Gaps = 4/297 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSVV 594
               F+  R     IS + SI  I  +        N GIDF GG  + +  ++P+ L+  
Sbjct: 8   TNFDFIGKRNISFVISAIISIIGIIAIIQMFRGAANMGIDFTGGTSVQLKFDKPLALADA 67

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R  L S  I ++  Q        LV+L  +    V +   +               +++T
Sbjct: 68  RKALHSGGIAELELQEVKEGNKLLVKLPRKSALVVGKAAEVVPAALVKAYPGLQVVVEST 127

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +GP I  +L +  IV V IS + ++ YI  RF + F +GAI   + DI      + LF
Sbjct: 128 TEIGPSIGDKLRKDTIVAVAISMLGIICYIAWRFDFKFGVGAIVATLHDILAMFAAYYLF 187

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G EFNL  + AVLT+ GYS+ D VVV+DR+R+N+       S   + + SINE L RS+ 
Sbjct: 188 GKEFNLLFITAVLTIAGYSLTDTVVVFDRIRENLHKDLKG-SLHKIFNTSINEVLSRSII 246

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           TS+  F++ + + VWGG VI  F+  +  GI+V   SS+F+A+P++L +        
Sbjct: 247 TSLTTFLAAIALFVWGGEVIHDFSFALLVGIIVGVYSSVFVASPVVLLLEQRAMNKQ 303


>gi|84688040|ref|ZP_01015901.1| protein-export membrane protein SecF [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84663946|gb|EAQ10449.1| protein-export membrane protein SecF [Rhodobacterales bacterium
           HTCC2654]
          Length = 322

 Score =  217 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 112/301 (37%), Positives = 174/301 (57%), Gaps = 7/301 (2%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L+P    + F    +  +G+S    + SI      GLN+GIDF+GG  +   +   VD+ 
Sbjct: 5   LVPKETNVDFFSRSWLSLGLSGALMVISIVAFLVFGLNFGIDFRGGTSIRTQSTEAVDVG 64

Query: 593 VVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             R  +  L +GD              E   +VR+Q Q GD       ++ V+  +T   
Sbjct: 65  AYRDAIAPLGLGDVAISEVFDPSFGPDENVAMVRIQSQDGDEAISVETIQAVEDALTAYD 124

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P  T  + E VGPK+S ELI   I  V  +   +LIYIW+RF+W F+LGA+  LI D+T 
Sbjct: 125 PNITFPSVESVGPKVSGELIWTAIEAVAAAMATVLIYIWLRFEWQFSLGAVAALIHDVTL 184

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+G F+LF I+F L  +AA+LT++GYS+ND VVV+DR+R+N++ +   +  +++++ SIN
Sbjct: 185 TIGVFSLFQIQFGLPIIAALLTIVGYSLNDTVVVFDRVRENLRRF-KKLDLKEVLNLSIN 243

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ETL R++ TS+   I+++ + V GG VI +F   M +G+VV   SS+F+A+ ILL +   
Sbjct: 244 ETLSRTMMTSVTTLIALIALFVLGGDVIRNFVFAMIWGVVVGTYSSVFVASAILLRLGVK 303

Query: 827 R 827
           R
Sbjct: 304 R 304


>gi|283834274|ref|ZP_06354015.1| protein-export membrane protein SecD [Citrobacter youngae ATCC
           29220]
 gi|291069798|gb|EFE07907.1| protein-export membrane protein SecD [Citrobacter youngae ATCC
           29220]
          Length = 604

 Score =  217 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 168/524 (32%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  ++   +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS  ++     ++   Q             ++ +     +  
Sbjct: 153 PYTTVRKEDNYGLSITFRDSNARDEAISYLSKRHQ-----------DLVISSQGSNALRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    +SV  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRSVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   S +  I++           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAINEGYAGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601


>gi|78485675|ref|YP_391600.1| protein-export membrane protein SecD [Thiomicrospira crunogena
           XCL-2]
 gi|78363961|gb|ABB41926.1| protein-export membrane protein SecD [Thiomicrospira crunogena
           XCL-2]
          Length = 625

 Score =  217 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 164/523 (31%), Positives = 281/523 (53%), Gaps = 38/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H +++VD +  V      Y DE++   ++  I
Sbjct: 112 NLAPATPDILRAVGGEPMYLGLDLRGGVHFLMDVDMEAAVQKTYNRYVDEVKGAFREARI 171

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+    + + + F D++       ++     G  +   VD +           + + 
Sbjct: 172 RYLSVSYETDHLMIKFRDAKSVSAAQAEMEKQFPGEFNLAPVDGQ---------NALELR 222

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L    I++  ++A++Q++  +R RI+++G++E  IQ+ G  RI++QLPG QD ++ +++L
Sbjct: 223 LQPKTIEEAKTYALKQNITTLRNRINELGVAEPVIQQQGDRRIVVQLPGVQDTAKAKEIL 282

Query: 207 GTTAKMSFHKVLPN------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           G TA + F  V                 G R     DG   L++  + +SG ++  A + 
Sbjct: 283 GATATLEFRLVEERGDAYRAEKTGYAPNGSRLYHFRDGRPILLKRSIIVSGDNVINAQSG 342

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT---------------- 304
            + ++    V ++ D  G R+    T++NIG  +AVV     +                 
Sbjct: 343 IETESGSAQVTVTLDGAGGRKMLATTKENIGHRMAVVYIENRVETIEKNGEKVKKRITTK 402

Query: 305 ---APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 + +   + + QI+G  + + A  LA +LRAG+L   + IVEER VG  LG D+I
Sbjct: 403 DVINAAVIRGQFANRFQITGLDSPQEAQDLALLLRAGALAAPMEIVEERTVGPSLGQDNI 462

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G  +++ G +L+++ M+  Y   G++A+ ++ LN+IL +A+LSLL ATLTLP IAGIV
Sbjct: 463 NQGMMSVIVGFLLVLVIMVWRYKTLGMIANMALTLNLILIVAVLSLLQATLTLPGIAGIV 522

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R   SV  +++ G+ +A+ TI D+NIT L+A +VLF FG
Sbjct: 523 LTVGMAVDANVLIFERIREELRT-SSVQSAINAGYEKAFVTIADANITTLLAALVLFSFG 581

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G ++GFAIT+ + I+ SMFTAI   RA++  +   K ++ + 
Sbjct: 582 TGPIKGFAITLSIGIITSMFTAILGTRAIVNALYGNKPVEKLS 624



 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 103/275 (37%), Gaps = 5/275 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S   ++          L    +  G     V     V+           +I      N  
Sbjct: 349 SAQVTVTLDGAGGRKMLATTKENIGHRMAVVYIENRVETIEKNGEKVKKRITTKDVINAA 408

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             +          G    Q      +  +   +     I     VGP + ++ I +G++ 
Sbjct: 409 VIRGQFANRFQITGLDSPQEAQDLALLLRAGALAAPMEIVEERTVGPSLGQDNINQGMMS 468

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           VI+  + +L+ +  R+K    + A   L L++   +   +L      L  +A ++  +G 
Sbjct: 469 VIVGFLLVLVIMVWRYK-TLGMIANMALTLNLILIVAVLSLLQATLTLPGIAGIVLTVGM 527

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +V+  V++++R+R+ ++    + S +  I+    +        ++   ++ L +  +G  
Sbjct: 528 AVDANVLIFERIREELR----TSSVQSAINAGYEKAFVTIADANITTLLAALVLFSFGTG 583

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            I  FAI ++ GI+ +  ++I     I+  +Y  +
Sbjct: 584 PIKGFAITLSIGIITSMFTAILGTRAIVNALYGNK 618


>gi|254427869|ref|ZP_05041576.1| protein-export membrane protein SecF [Alcanivorax sp. DG881]
 gi|196194038|gb|EDX88997.1| protein-export membrane protein SecF [Alcanivorax sp. DG881]
          Length = 302

 Score =  217 bits (551), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 92/291 (31%), Positives = 153/291 (52%), Gaps = 3/291 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           + I FM AR     +S+   + S+ LL T GLN G+DF GG  + V +   V+LS VR++
Sbjct: 1   MNINFMAARKPLGVLSLALVVISVALLLTRGLNLGLDFTGGTTVVVKSPVDVELSEVRAD 60

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L     GD   Q++   K   +R+   P D     +V   V   +    P    Q  E V
Sbjct: 61  LADAGFGDAVVQHYGSPKEVNIRV--APRDGKDADQVGLNVVAVLKNHNPDLEKQKVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +    ++++   M++Y+W RF   F +  +  L  D+   LG F+L    
Sbjct: 119 GPQVGDELRDESGTAMLLALGLMMVYVWFRFSNKFGVATVVALFHDVIIVLGLFSLIQWP 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL LIGYS+ND +VV DR+R++ +  +       +I+ ++N+TL R++ TS 
Sbjct: 179 FDLTVLAAVLALIGYSLNDSIVVADRIREDFR-NSRQTDPVAIINGAVNQTLTRTINTSA 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + ++ +  +GG V+ SF+  +  G+ V   SSI++ + IL  +   + 
Sbjct: 238 TTLLVLVALYFFGGEVMRSFSEALLVGVFVGTYSSIYVVSNILFMMKVSKE 288


>gi|325127703|gb|EGC50614.1| protein-export membrane protein SecD [Neisseria meningitidis N1568]
          Length = 617

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 164/506 (32%), Positives = 275/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++ Q  N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVCQAGNSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSDGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G+ RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGADRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLELRMVEDDPAKLREALEGNVPSGYELLSSGGDRPEILLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 38.5 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQFKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|149375021|ref|ZP_01892794.1| protein-export membrane protein SecF [Marinobacter algicola DG893]
 gi|149360910|gb|EDM49361.1| protein-export membrane protein SecF [Marinobacter algicola DG893]
          Length = 318

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 91/289 (31%), Positives = 153/289 (52%), Gaps = 6/289 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM  R     +SI   + +I LL   GLN G+DF GG  + +   +   L  VR  LE
Sbjct: 9   IDFMGFRKIASVVSIALVVAAIALLAVRGLNLGLDFTGGTSVELEYQQAPALDNVRQTLE 68

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           S        QNF  +   LVR+     D     ++   V   ++       + ++E VG 
Sbjct: 69  SAGYEQFVVQNFGSDTTVLVRMAESEND-----QLAAEVTAALSAGGNQLELVSSEFVGS 123

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  EL     +G++I+   +LIY+ +RF++ F + ++  L  D+   LG FALF   F+
Sbjct: 124 QVGDELKEDSGLGMLIALAVVLIYVGMRFQFKFGIASVVPLAHDVIIVLGVFALFQWTFD 183

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L+ +AA+L +IGYS+ND +VV DR+R+N +      S   +I++SI++T+ R++ TS   
Sbjct: 184 LSVLAALLAVIGYSLNDTIVVADRIRENFRKMREGGS-EHIINESIHQTISRTINTSGTT 242

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +  +   GG  I +FA+ +  G+VV   SSI+++A +L+ +   R 
Sbjct: 243 LVVLFALYFLGGEAINNFALALIIGVVVGTYSSIYVSANLLVALGVARE 291


>gi|15602091|ref|NP_245163.1| preprotein translocase subunit SecF [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720452|gb|AAK02310.1| SecF [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 324

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 100/293 (34%), Positives = 162/293 (55%), Gaps = 4/293 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM  R WG  +SIL  + S+  + T G N+G+DF GG  + +  ++P +L  VR
Sbjct: 20  PYRLIHFMAHRKWGYLLSILVIVASLFFIVTKGFNWGLDFTGGTVIDMSFSQPAELDKVR 79

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             LE   I     QN    ++ ++RL     D+     + E+    +       T+ + E
Sbjct: 80  LTLEQKGIQGAIVQNSGSVRDIIIRLPAAISDANIGNNIKELFAATV---DKNVTVHSIE 136

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + + + +L+YI +RF+W  ALGA+ +L  D+  TLG F+L  
Sbjct: 137 FVGPNVGEELTQSAIYATLATLLMLLVYIGMRFEWRLALGAVASLAHDVLVTLGLFSLLQ 196

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE NLT VAA+LT++GYS+ND +VV+DR+R+N++    +    D+I+ S+++TL R++ T
Sbjct: 197 IEMNLTFVAAILTVVGYSLNDSIVVFDRVRENIRKIRRT-DVLDIINISLSQTLSRTLMT 255

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S    I V+ + ++GG  I SF++ +  GI     SSIF+A  +   +   R 
Sbjct: 256 SATTIIVVVSLLLFGGPSIHSFSVALLIGIGFGTYSSIFVAIALAYDLGLKRE 308


>gi|197105416|ref|YP_002130793.1| protein-export membrane protein SecF [Phenylobacterium zucineum
           HLK1]
 gi|196478836|gb|ACG78364.1| protein-export membrane protein SecF [Phenylobacterium zucineum
           HLK1]
          Length = 320

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 172/308 (55%), Gaps = 10/308 (3%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL------NYGIDFKGGIQ 580
                 +IP     +F+R       +S L  I S+              N GIDF GG  
Sbjct: 1   MWPLIKIIPIKTNFRFVRFAKIAGILSALAVIASLARALMPFEPPCGGLNCGIDFTGGTV 60

Query: 581 LGV-LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           + +  A + VDL+  R+ +  L++GD   Q F      +VR  YQP    +  +V E V+
Sbjct: 61  IELSTAPQQVDLAAARAAINRLELGDPQVQGFGDGTAAMVR--YQPPAGASADQVAEQVR 118

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +T+ +   T    ++VG K+S EL + G+  + ++ + MLIYIW RF+  F +GA+  
Sbjct: 119 GALTQALGQVTFDAPDVVGAKVSGELFQSGLTALGLAILLMLIYIWFRFELQFGIGAVVG 178

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  D+  T G  A F +EF+L  VAA+LT+IGYS+ND VVV+DR+R+N++ Y   +  R+
Sbjct: 179 LFHDVILTFGLIAFFQLEFSLNTVAAILTVIGYSMNDTVVVFDRLRENLRKY-KRMPLRE 237

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +ID SINETL R++ T + A +++  +A++GG  +   +I + FGI++   SS+++AAP+
Sbjct: 238 VIDLSINETLSRTIITGVTAIMALTGLALFGGPTLFDMSIVLIFGIIIGTYSSVYVAAPV 297

Query: 820 LLFIYDWR 827
           +L     R
Sbjct: 298 ILLWGVKR 305


>gi|189184070|ref|YP_001937855.1| preprotein translocase subunit SecD [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180841|dbj|BAG40621.1| protein-export membrane protein SecD [Orientia tsutsugamushi str.
           Ikeda]
          Length = 520

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 183/530 (34%), Positives = 304/530 (57%), Gaps = 19/530 (3%)

Query: 1   MRNNPW-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+   +  + +  +I  I L   +PNF   +        +P+  I+LGLDL+GGS+++L+
Sbjct: 1   MKQFLFNKIFITVLITAIALCFVVPNFFDTTKY----QWLPQKTINLGLDLKGGSYVLLQ 56

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           +D D +V   L +    LR  L+   IG   ++  +  I L   DS  +  + + +    
Sbjct: 57  LDFDTYVTEQLNIIVGNLRKELRNNKIGYKELKIQKQYIHLELRDSEARFKVENLLRNLE 116

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +           L+  +   ++ I  + + + ++    IE SMEIIR RID  G +E+
Sbjct: 117 TSI-----------LIKFSQNNKLHISFTDHKLSELRESLIENSMEIIRMRIDSSGTTEA 165

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG---VRFLRDS 236
            IQ+ G + I++++PG +DP  L+ L+   AK++F+ V      +        +     +
Sbjct: 166 NIQKHGDNNIILEVPGIEDPKHLKNLVTKIAKLTFNIVDSGTVAQDQHISKDLMLVKEQN 225

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +    L+  +    G  L         K  +PVV  +F+ +G + F ++T++  G+ LA+
Sbjct: 226 NPENKLLVRRQPTIGGDLLTNANVSFNKYSQPVVSFTFNSLGTKLFADITKEYQGRRLAI 285

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           +LD ++L+APVI++ I  G   ISGNFTIE+A  L+ +L++G+LP  L+++EE+ +G  L
Sbjct: 286 ILDSKLLSAPVISEPILGGAGMISGNFTIESAKELSLLLKSGALPAALSVIEEKTIGPTL 345

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           GSDSI  G  A   G +L+ +FM+ +YG  GL A+ ++F ++I  LA+LS+L ATLTLP 
Sbjct: 346 GSDSIQAGKLAGYIGFILVCIFMLCIYGILGLFANIALFFSLIYILAILSMLQATLTLPG 405

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGI+L IG+AVD+NIL+ ERIREE +   S+  S+  GF  +++TI DSNIT L+A ++
Sbjct: 406 IAGIILTIGMAVDANILIYERIREELQNGNSILYSVREGFKLSFATIIDSNITTLLAAIL 465

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           L+ FG GAV+GFAIT+ + IL SM++A  I R ++   ++YK    ++  
Sbjct: 466 LYIFGTGAVKGFAITLAIGILSSMYSATIITRLLIDSWVKYKLPIKLNTT 515



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 76/176 (43%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I+ G +   I  I + I++   +     L A   L   +   L   ++  
Sbjct: 340 TIGPTLGSDSIQAGKLAGYIGFILVCIFMLCIYGIL-GLFANIALFFSLIYILAILSMLQ 398

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  +++Y+R+R+ ++      S    + +    +    + +
Sbjct: 399 ATLTLPGIAGIILTIGMAVDANILIYERIREELQ---NGNSILYSVREGFKLSFATIIDS 455

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   ++ + + ++G   +  FAI +A GI+ +  S+  I   ++     ++    
Sbjct: 456 NITTLLAAILLYIFGTGAVKGFAITLAIGILSSMYSATIITRLLIDSWVKYKLPIK 511


>gi|121611003|ref|YP_998810.1| preprotein translocase subunit SecD [Verminephrobacter eiseniae
           EF01-2]
 gi|121555643|gb|ABM59792.1| protein-export membrane protein SecD [Verminephrobacter eiseniae
           EF01-2]
          Length = 636

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 173/516 (33%), Positives = 277/516 (53%), Gaps = 15/516 (2%)

Query: 18  GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL 77
              I   N + +S    +  A+  N + LGLDLRGG H +L+VD    +    + Y+ ++
Sbjct: 102 ASYIVALNLVSRSPT--WLKALHANPMYLGLDLRGGVHFMLQVDMQAALTKKAESYAGDI 159

Query: 78  RSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVT 137
           R  L+ +GI    + +    I +   D        + +       + +L+  P+      
Sbjct: 160 RGLLRDQGIRHGGVSREGQNIDIRVRDEATLTAARNAIAR--SLTDLQLSSRPEDGADSA 217

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                +   +       V   A++Q++  +  RI+++G++E  IQ+ G  RI++QLPG Q
Sbjct: 218 GGGFRLRAFIKPEATRLVQEQALKQNIVTLHNRINELGVAEPVIQQQGQDRIVVQLPGVQ 277

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKK-------GFMFGVRFLRDSDGNQYLVEDKVEIS 250
           D ++ + +LG TA +    V  +   +           G     + +G   +V+ +V ++
Sbjct: 278 DTAKAKDILGRTATLEVRMVDESTEARSAASGRVPLPLGSERYPERNGQPVIVKKQVVLT 337

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAP 306
           G +L  A   FD +T +P V+++ D  GAR F +VTR+N+GK +         G V+TAP
Sbjct: 338 GENLTDAQPGFDGQTQEPTVNLTLDAKGARIFRDVTRENVGKRMAIVLFEKGQGEVVTAP 397

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
           VI   I  G+ QISG+ + + A   A +LRAGSL   + I+EE  +G  LG+D+I +G  
Sbjct: 398 VIRSEIGGGRVQISGSMSTDEAHDTALLLRAGSLAAPMEIIEEFTIGPTLGADNIERGIH 457

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           ++V GL  I LFM   Y  +GL +  ++ +NV+L +A+LS+L ATLTLP IA + L IG+
Sbjct: 458 SVVWGLAAIALFMCCYYQLFGLFSSIALAVNVLLLVAVLSMLQATLTLPGIAAMALAIGV 517

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R   S   ++  G+ RA++TI DSN+T LIA + L  FG G VR
Sbjct: 518 AIDSNVLINERIREELRSGISAQAAIHTGYERAWATIVDSNVTTLIAGLALLTFGSGPVR 577

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           GFA+   + IL SM +A+   RA++      +K   
Sbjct: 578 GFAVVHCIGILTSMLSAVLFSRALVNLWYGRQKKLK 613



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 86/212 (40%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I +GI  V+    A+ 
Sbjct: 408 VQISGSMSTDEAHDTALLLRAGSLAAPMEIIEEFTIGPTLGADNIERGIHSVVWGLAAIA 467

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++   ++  F L +   L +++   +   ++      L  +AA+   IG +++  V++ 
Sbjct: 468 LFMCCYYQL-FGLFSSIALAVNVLLLVAVLSMLQATLTLPGIAAMALAIGVAIDSNVLIN 526

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++   + IS +  I           V +++   I+ L +  +G   +  FA+  
Sbjct: 527 ERIREELR---SGISAQAAIHTGYERAWATIVDSNVTTLIAGLALLTFGSGPVRGFAVVH 583

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++  +  ++   Y  + K   +
Sbjct: 584 CIGILTSMLSAVLFSRALVNLWYGRQKKLKSL 615


>gi|237744284|ref|ZP_04574765.1| translocase subunit secF [Fusobacterium sp. 7_1]
 gi|229431513|gb|EEO41725.1| translocase subunit secF [Fusobacterium sp. 7_1]
          Length = 316

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 84/295 (28%), Positives = 148/295 (50%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +  ++     + ISI+    SI + FT GLNYGIDF GG    +  +         
Sbjct: 1   MKTHLHIIKNIKIYLSISIILVTLSIIIFFTKGLNYGIDFSGGNLFQLKYSGTAVTLNQI 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +        ++   N +  K  +             +   +       + +   T+   +
Sbjct: 61  NENLDELAKELPQVNSNSRKVQISDDGTVIVRVPEISENDKKKVLNSLQQLGSYTLDKED 120

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  I  +L +  I  + I AI +++YI +RF++ FA+G I +L+ DI   +GF AL G
Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVVYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E +   +AA+LT++GYS+ND +V+YDR+R+N+K      +    +D+S+N+T  RS+ T
Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEQCMDESVNQTAIRSLNT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           S+    SV+ + ++GG+ + +F + +  GI+    SSIF+A PI+  +   +  N
Sbjct: 241 SVTTLFSVIAILIFGGASLKTFIMTLLIGILAGTYSSIFVATPIVYLLNKRKGNN 295


>gi|307543989|ref|YP_003896468.1| preprotein translocase subunit SecD [Halomonas elongata DSM 2581]
 gi|307216013|emb|CBV41283.1| preprotein translocase subunit SecD [Halomonas elongata DSM 2581]
          Length = 616

 Score =  217 bits (551), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 158/522 (30%), Positives = 278/522 (53%), Gaps = 36/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +  +  P+ +     + ++LGLDLRGG H +LEVD +  +   L+  +  +R+ L+ E +
Sbjct: 105 NQAESTPAWLESLAASPMTLGLDLRGGVHFLLEVDMEAAITQRLESDASAMRNLLRDERL 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +    +  I++ F ++  ++     +        +    D   + +  T    + + 
Sbjct: 165 RYRNTELGERSISMDFMNAEDRDQARQLI--------APEYPDFDYSNVEKTRGAGLEMT 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+   ++++  +A+ Q++  +R R++++G+SE  +QR G +RI+++LPG QD +  ++++
Sbjct: 217 LTDTAVNEIQDYAVNQNLTTLRNRVNELGVSEPLVQRQGPNRIVVELPGVQDTAAAKRII 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F                   RD++     +   V I+G  ++ A  +FD    
Sbjct: 277 GATANLEFRLEA-RPDTPESETETFPFRDNEARTATLMRDVIITGDRVSNANRSFDENG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+IS D  G       TR NIG+ +AV+          +                  
Sbjct: 335 RPQVNISLDGTGGTLMNRATRTNIGRNMAVLFIEHNSRERTVMKDGEPTTVRTQDTERGI 394

Query: 309 -----NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LR+GSL   +   +ER +G  LG+ ++ +
Sbjct: 395 ISLATIQSALGNSFRITGLESPTEAADLALLLRSGSLAAPMYFAQERTIGPSLGAKNVER 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  ++  GL+L+VLFM+V Y  +G+ A+ ++  N+ L +A++S+LGATLTLP IAGIVL 
Sbjct: 455 GILSVQVGLLLVVLFMLVRYRVFGVFANLALGFNLTLLVAVMSMLGATLTLPGIAGIVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+ ERIREE R   SV  ++  G+ RA+S+I D+NIT L+  ++LF  G G
Sbjct: 515 LGMAVDANVLIFERIREELRNGLSVQQAIHAGYERAFSSIVDANITTLLVALILFSIGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            V+GFA+T+ L IL S+FTA+ + RAM+      K +K + I
Sbjct: 575 PVKGFAVTLSLGILTSLFTALMVTRAMVNLCYGGKPVKKLWI 616



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 96/251 (38%), Gaps = 4/251 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +   +     +          Q  +    +    ++ L       G           +  
Sbjct: 367 IEHNSRERTVMKDGEPTTVRTQDTERGIISLATIQSALGNSFRITGLESPTEAADLALLL 426

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           +   +           +GP +  + + +GI+ V +  + +++++ +R++  F + A   L
Sbjct: 427 RSGSLAAPMYFAQERTIGPSLGAKNVERGILSVQVGLLLVVLFMLVRYRV-FGVFANLAL 485

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             ++T  +   ++ G    L  +A ++  +G +V+  V++++R+R+ ++     +S +  
Sbjct: 486 GFNLTLLVAVMSMLGATLTLPGIAGIVLTLGMAVDANVLIFERIREELR---NGLSVQQA 542

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I           V  ++   +  L +   G   +  FA+ ++ GI+ +  +++ +   ++
Sbjct: 543 IHAGYERAFSSIVDANITTLLVALILFSIGTGPVKGFAVTLSLGILTSLFTALMVTRAMV 602

Query: 821 LFIYDWRAKNA 831
              Y  +    
Sbjct: 603 NLCYGGKPVKK 613


>gi|294783328|ref|ZP_06748652.1| protein-export membrane protein SecF [Fusobacterium sp. 1_1_41FAA]
 gi|294480206|gb|EFG27983.1| protein-export membrane protein SecF [Fusobacterium sp. 1_1_41FAA]
          Length = 318

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 159/297 (53%), Gaps = 3/297 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPVDLSVV 594
             + +  +R   + + +SI+  I SI + F  GLNYGIDF GG    +   ++ + L+ +
Sbjct: 1   MKVNLHIIRNIKYYLSVSIVLVILSIVVFFAKGLNYGIDFTGGNLFQLKYNDKKITLTEI 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             NL+ L        +   +                +    + +   + E+   +     
Sbjct: 61  NENLDKLSEKLPQVNSNSRKVQISEDGTVILRVPELKEEDKKEILNSLQELGAFNL-DKE 119

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           + VG  I  +L +  I  + I AI +++YI +RF++ FA+G I +L+ DI   +GF AL 
Sbjct: 120 DKVGASIGDDLKKSAIYSLGIGAILIVLYITLRFEFSFAIGGILSLLHDIIIAIGFIALM 179

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSV 773
           G E +   +AA+LT++GYS+ND +V+YDR+R+N+ + +T + +  D +D+S+N+T  RS+
Sbjct: 180 GYEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRRHTKNWTLEDCMDESVNQTAIRSL 239

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            TS+    SV+ + ++GG+ + +F + +  GI+    SSIFIA PI+  +   +  N
Sbjct: 240 NTSITTLFSVIALLIFGGASLKTFIMTLLIGILAGTYSSIFIATPIVYILNKRKGNN 296


>gi|117919885|ref|YP_869077.1| preprotein translocase subunit SecD [Shewanella sp. ANA-3]
 gi|117612217|gb|ABK47671.1| protein-export membrane protein SecD [Shewanella sp. ANA-3]
          Length = 616

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 161/522 (30%), Positives = 279/522 (53%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + RS L++E I
Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D+    +    +             D   + +    +  +  V
Sbjct: 164 RYAGIRNNAQGIEIKFRDAESLASAERFLKSRSN--------DMVFSDVSKGEDFALQAV 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+  + Q+   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 MSETYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V                G    +  +G Q +++ +V ++G H+ GA  +F
Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRVPAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           D  + +P V I+ D  G   F  VT+DNIGKP+A +      +           +     
Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394

Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                  A  LA +LRAG+L   ++IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+ ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 VQAMIWGMAVVLIFMLVYYRSFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           A++GFA+T+ + I  SMFTAI   RA++  I   K++K++ I
Sbjct: 575 AIKGFAVTLMIGIATSMFTAIVGTRAIVNAIWGGKRVKTLSI 616



 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 93/241 (38%), Gaps = 6/241 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  R+   S+++  I            +   +              +  +   ++   +
Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     +GP +  E I  G+  +I     +LI++ + ++  F L A   L  ++   +G 
Sbjct: 436 IVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYR-SFGLIANLALTANLVMVVGV 494

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +      
Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828
                 ++  F++ L +   G   I  FA+ +  GI  +  ++I     I+       R 
Sbjct: 552 STIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRAIVNAIWGGKRV 611

Query: 829 K 829
           K
Sbjct: 612 K 612


>gi|91774867|ref|YP_544623.1| protein-export membrane protein SecD [Methylobacillus flagellatus
           KT]
 gi|91708854|gb|ABE48782.1| protein-export membrane protein SecD [Methylobacillus flagellatus
           KT]
          Length = 609

 Score =  216 bits (550), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 173/509 (33%), Positives = 277/509 (54%), Gaps = 24/509 (4%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L R P  +       + LGLDLRGG H +L+VD    ++   + Y  + RS L+   I
Sbjct: 104 NLLSRSPEWLRSIGARPMYLGLDLRGGVHFLLQVDMKSALDQAAERYVGDFRSVLRTARI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +    + + F D+         +             D          +  ++ V
Sbjct: 164 NYLGVSRDGQAVNIRFKDTAELSKAQRVLEKEY--------PDLTFRTSNRGEDSILTAV 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+    ++   AI+Q+++ +  RI+++G++E  IQ+ G  R+++QLPG QD ++ +++L
Sbjct: 216 LSEPAKKRIQEFAIKQNIQTLHNRINELGVAEPVIQQQGIDRVVVQLPGVQDTAKAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKK---------GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           G TA +    V  + S              FG  F  D +G   LV+  V ++G ++  A
Sbjct: 276 GRTATLEIRMVDEDRSNAVTLENASKGQVPFGTEFYIDRNGIPMLVKKNVVLTGDYITDA 335

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIP 313
               DP+    VV ++ D  GAR F +VTR+N+GK +           V+TAPVI + I 
Sbjct: 336 GPGMDPQGGGAVVHVTLDARGARIFKQVTRENVGKRMAILLIEKGQAEVITAPVIREEIG 395

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
            G+ QISG    + A  +A +LRAG+L   + I+EER VG  +G  +I +G  + + G V
Sbjct: 396 GGRVQISGMANTQEATDVALLLRAGALAAPMEIIEERTVGPSMGEANIERGMHSTLWGFV 455

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
            I +FMI  Y  +G V+  ++ +N+IL +ALLS+L ATLTLP IA + L +G+A+D+N+L
Sbjct: 456 AISIFMIAYYMLFGTVSVLALSINLILLVALLSMLQATLTLPGIAAVALTLGMAIDANVL 515

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
           +NERIREE R   +   S+  G+ RA+ TI D+N+T +IA + LF FG G V+GFA+   
Sbjct: 516 INERIREEMRNGNTPQASIHAGYERAFGTILDANVTTMIAGLALFMFGTGPVKGFAVVHV 575

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKS 522
           L IL SMF+A+ + RA++  I  Y++  S
Sbjct: 576 LGILTSMFSAVLVSRAVINLIYGYRRKIS 604



 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 88/205 (42%), Gaps = 4/205 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             Q      +  +   +     I     VGP +    I +G+   +   +A+ I++   +
Sbjct: 406 NTQEATDVALLLRAGALAAPMEIIEERTVGPSMGEANIERGMHSTLWGFVAISIFMIAYY 465

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              F   ++  L +++   +   ++      L  +AAV   +G +++  V++ +R+R+ M
Sbjct: 466 -MLFGTVSVLALSINLILLVALLSMLQATLTLPGIAAVALTLGMAIDANVLINERIREEM 524

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      + +  I        G  +  ++   I+ L + ++G   +  FA+    GI+ +
Sbjct: 525 R---NGNTPQASIHAGYERAFGTILDANVTTMIAGLALFMFGTGPVKGFAVVHVLGILTS 581

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
             S++ ++  ++  IY +R K +++
Sbjct: 582 MFSAVLVSRAVINLIYGYRRKISKL 606


>gi|320197155|gb|EFW71772.1| Protein-export membrane protein SecF [Escherichia coli WV_060327]
          Length = 323

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 87/301 (28%), Positives = 165/301 (54%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  GIS L  I +I ++   G N+G+DF GG  + ++  +
Sbjct: 5   YTVEQLNHGRKVYDFMRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEIMLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P ++ V+R  L+     +   QNF    + +VR+    G++  Q    +++K        
Sbjct: 65  PAEIDVMRDALQKAGFEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 LGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLMVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|296115190|ref|ZP_06833831.1| bifunctional preprotein translocase subunit SecD/SecF
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295978291|gb|EFG85028.1| bifunctional preprotein translocase subunit SecD/SecF
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 317

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 124/303 (40%), Positives = 183/303 (60%), Gaps = 4/303 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             +P    I FMR RF G+  S + S+ S+ L F  GL  G+DF+GGI +      P D+
Sbjct: 9   RFVPRGTKIDFMRGRFIGLATSAVLSVASLILFFHPGLTLGLDFRGGIVVEAHTQGPADV 68

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE---IVPL 648
           S +R+ L +  +     Q+F G  + L+RL   P    A     + +   +      +P 
Sbjct: 69  SAIRAALATQHVTAAGVQSFGGPDDVLIRLDTPPQSDPAHEAETQGMVDAVRHAIGTIPG 128

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           + +   + VG  +S EL R G++ + IS + +L YIW RF+W FA+ A+ TL+LD+TK +
Sbjct: 129 AQVLRADAVGASVSAELFRNGMLALGISLLMILAYIWFRFEWEFAVSAVVTLVLDLTKAV 188

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           GF  L   EF+L  VAA+LT++GYS NDKVVVYDR+R+N++ Y  S+   +LI+ SINET
Sbjct: 189 GFLVLTHFEFDLVMVAAILTILGYSTNDKVVVYDRIRENLRKY-RSMPLAELINLSINET 247

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS   F++ LP+A++GG+ +  FA  M FGIVV  SSSIFIAAP+LL + + R 
Sbjct: 248 LSRTLGTSSTVFLAALPLALFGGASLSGFAWVMLFGIVVGTSSSIFIAAPLLLLLGEKRL 307

Query: 829 KNA 831
           +  
Sbjct: 308 RRN 310


>gi|262274805|ref|ZP_06052616.1| protein-export membrane protein SecD [Grimontia hollisae CIP
           101886]
 gi|262221368|gb|EEY72682.1| protein-export membrane protein SecD [Grimontia hollisae CIP
           101886]
          Length = 606

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 159/526 (30%), Positives = 282/526 (53%), Gaps = 43/526 (8%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     N + LGLDLRGG H ++EVD D  +   L    D  R+ L++  I
Sbjct: 94  NLAPATPDWLEAIGANPMKLGLDLRGGVHFLMEVDMDAAMEKLLTQQEDTFRTELREAKI 153

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +R   +  I +   +    E    ++        ++L+ D     + TT     ++
Sbjct: 154 RYRGIRVGGDDNIEVMLRNDADMEKAESEL--------ARLHPDM----VFTTDSARFAV 201

Query: 146 V--LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
               ++    ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +
Sbjct: 202 SGKFTEERFQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAK 261

Query: 204 QLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
           ++LG TA + F +V  +             G       DG   +++ +V + G  +  A+
Sbjct: 262 EILGATATLEFREVDDSADLAAAAAGRVPPGSEIKYTRDGRPVVLKKRVILGGSSITDAS 321

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV---------------- 302
           ++FD  + +P V+IS D  G  +    +++N+GK +A V                     
Sbjct: 322 SSFDEYS-RPQVNISLDSDGGSKMAAFSKNNVGKLMATVFAEYKDSGKRDENGKVILSKH 380

Query: 303 --LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +      Q       +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +
Sbjct: 381 EEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQN 440

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAG 419
           I  G  A + GL+ ++LF +V Y ++GL A+ ++  N++L + ++S++  AT+TLP IAG
Sbjct: 441 IDMGIKACIWGLLAVMLFTLVYYRRFGLFANCALAANIVLIIGVMSMIPGATMTLPGIAG 500

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+ ERIREE  + ++   ++  G++ A+STI D+NIT LI  ++LF 
Sbjct: 501 IVLTVGMAVDANVLIFERIREELNEGRNPQQAIHQGYANAFSTIADANITTLITAIILFA 560

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G GAV+GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 561 VGTGAVKGFAVTLSIGILTSMFTAIIGTRCLVNLVYGGKRINKLSI 606



 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D      N + +        N    +  L R     G           +  +   
Sbjct: 360 FAEYKDSGKRDENGKVILSKHEEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGA 419

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F L A   L  +I
Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIKACIWGLLAVMLFTLVYYR-RFGLFANCALAANI 478

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ +       + +  I +
Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELNE---GRNPQQAIHQ 535

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   +  FA+ ++ GI+ +  ++I     ++  +
Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAVKGFAVTLSIGILTSMFTAIIGTRCLVNLV 595

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 596 YGGKRINK 603



 Score = 38.9 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 76/252 (30%), Gaps = 40/252 (15%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  ++  +G L ALPN   +    +   A              G+ + L           
Sbjct: 1   MVVLVLFVGALYALPNIYGEDPAVQITGAR-------------GASVDL----------- 36

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG-----VNS 124
                D ++S L+K+ I   S+      + + F+D+  +    D +   L+        +
Sbjct: 37  --STLDTVKSSLEKDNIPYQSIALENGTVLVRFSDTDNQIEARDALNDKLKDNDLVVALN 94

Query: 125 KLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                P     +     ++ +        L + ++D  +   + Q  +  R  + +  I 
Sbjct: 95  LAPATPDWLEAIGANPMKLGLDLRGGVHFLMEVDMDAAMEKLLTQQEDTFRTELREAKIR 154

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
              I+  G   I + L  + D  +    L                     F     R  +
Sbjct: 155 YRGIRVGGDDNIEVMLRNDADMEKAESELARLHPDMVFTTDSARFAVSGKFTEE--RFQE 212

Query: 238 GNQYLVEDKVEI 249
              Y VE  + I
Sbjct: 213 IRNYAVEQNITI 224


>gi|183601035|ref|ZP_02962528.1| hypothetical protein PROSTU_04656 [Providencia stuartii ATCC 25827]
 gi|188019373|gb|EDU57413.1| hypothetical protein PROSTU_04656 [Providencia stuartii ATCC 25827]
          Length = 604

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 161/524 (30%), Positives = 275/524 (52%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  ++   +   D +R+ L++  +
Sbjct: 93  NLAPATPKWLEAVGGEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNMDGIRNDLRQAKV 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+R+  N  + + F ++  +      +    Q             +        ++ 
Sbjct: 153 PYSSIRKGDNYSVEIRFRNADDRSQAEKILLRKFQ-----------DLVFSNGNNNTMTA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +  ++A+ Q++ IIR R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDERLREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGAERIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  +        G          D +G  Y++  +V ++G H+  +T+ 
Sbjct: 262 LGATATLEFRLVNQSVDPAAAENGRVPGDSEVKYDRNGFPYVLYKRVVLTGDHITDSTS- 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------------V 302
              +   P V I  D  G     + TRDN GK +A +                       
Sbjct: 321 GSDENGAPQVSIGLDSAGGSVMSDFTRDNQGKQMATLFVEYKDSGKKDAEGRVILMKDEK 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       A    + +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINAANISARFGSQFRITGITDPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIE 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL   +LFMI+ Y K+GL+A  ++F N+I+ + ++SLL  ATLT+P IAGIV
Sbjct: 441 QGLKACLAGLFASILFMIIYYRKFGLIASTALFANLIMIVGVMSLLPGATLTMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE R  +SV  S+  G+  A+S+I D+N+T LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELRNGRSVQQSIHEGYKGAFSSIIDANLTTLITAIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 561 TGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYGGKRINKLSI 604



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +    A ++++ I ++  F L A T L  ++   +G  +L  
Sbjct: 429 TIGPTLGLQNIEQGLKACLAGLFASILFMIIYYR-KFGLIASTALFANLIMIVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +         + 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQSIHEGYKGAFSSIID 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+  +  ++I     I+  +Y  +  N 
Sbjct: 545 ANLTTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYGGKRINK 601


>gi|33152766|ref|NP_874119.1| preprotein translocase subunit SecF [Haemophilus ducreyi 35000HP]
 gi|33148990|gb|AAP96508.1| protein-export membrane protein SecF [Haemophilus ducreyi 35000HP]
          Length = 324

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 89/293 (30%), Positives = 158/293 (53%), Gaps = 4/293 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM+ R++G   S + +   I  + T G N+G+DF GG  +    ++P +L+ +R
Sbjct: 16  PYKLIPFMKYRYFGFLFSFIVTGLCIFSIVTKGFNWGLDFTGGTVIETTFSQPANLAEIR 75

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L+         Q    +K  ++RL    GD     +++++V + +      + I++ E
Sbjct: 76  TLLKQNGYESALVQTTGSQKELMIRLPASAGDMSLGNKIMDLVHRDL---DANAIIKSVE 132

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + +   +L+Y+  RF+   A+G I  L  D+  T+G F+   
Sbjct: 133 FVGPNVGEELTQGAIWATLATLGMLLLYVGTRFEIRLAIGGILALFHDVLVTVGLFSFLQ 192

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N        S  ++ID S+++TL R++ T
Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKIRRVTSI-EIIDISLSQTLSRTLMT 251

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S+     VL + ++GG  I SF++ +  GI     SSI++A  + L +   R 
Sbjct: 252 SITTLFVVLALFLFGGPTIHSFSLALLIGIGFGTYSSIYVAIGVALQLGLDRE 304


>gi|34763056|ref|ZP_00144030.1| PROTEIN TRANSLOCASE SUBUNIT SECF [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|237741674|ref|ZP_04572155.1| protein translocase subunit secf [Fusobacterium sp. 4_1_13]
 gi|256844998|ref|ZP_05550456.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_36A2]
 gi|294785715|ref|ZP_06751003.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_27]
 gi|27887282|gb|EAA24379.1| PROTEIN TRANSLOCASE SUBUNIT SECF [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|229429322|gb|EEO39534.1| protein translocase subunit secf [Fusobacterium sp. 4_1_13]
 gi|256718557|gb|EEU32112.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_36A2]
 gi|294487429|gb|EFG34791.1| protein-export membrane protein SecF [Fusobacterium sp. 3_1_27]
          Length = 316

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 147/295 (49%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +  ++     + ISI+    SI + FT GLNYGIDF GG    +            
Sbjct: 1   MKTNLHVIKNIKIYLSISIILVTLSIVIFFTKGLNYGIDFSGGNLFQLKYTSTSVTLNQI 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +        ++   N +  K  +             +   +       + +   T+   +
Sbjct: 61  NENLDKLAKELPQVNSNSRKVQISDDGTVIVRVPEISENDKRKVLNNLKELGSYTLDKED 120

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  I  +L +  I  + I AI ++IYI +RF++ FA+G I +L+ DI   +GF AL G
Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVIYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E +   +AA+LT++GYS+ND +V+YDR+R+N+K      +  + +D SIN+T  RS+ T
Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWTLEECMDNSINQTAIRSLNT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           S+    SV+ + V+GG+ + +F + +  GI+    SSIF+A PI+  +   +  N
Sbjct: 241 SVTTLFSVIAILVFGGASLKTFIMTLLIGILAGTYSSIFVATPIVYLLNKKKGNN 295


>gi|326794834|ref|YP_004312654.1| protein-export membrane protein SecD [Marinomonas mediterranea
           MMB-1]
 gi|326545598|gb|ADZ90818.1| protein-export membrane protein SecD [Marinomonas mediterranea
           MMB-1]
          Length = 617

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 158/523 (30%), Positives = 275/523 (52%), Gaps = 37/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++   P  +         LGLDLRGG H +LEVD    +   L++   E+++ L+KE I
Sbjct: 105 NLVPTTPDWLASLGAGPAKLGLDLRGGVHFLLEVDTPAALKQRLEVAGSEMKAALRKERI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+      +++ F     ++     +         +         +       ++I 
Sbjct: 165 RYRSVEIKDGVMSIRFLKDSDRDLAESLLKDDFGDYLYR--------TVEDGKSFFLTIG 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            S+    ++ ++A+EQ++  +R R++++G++E  +QR GS+RI+++LPG QD +  ++++
Sbjct: 217 FSEAEQKEIEAYALEQNLTTLRNRVNELGVAEPLVQRQGSNRIVVELPGVQDTAAAKRII 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F                   R+  G    +E  + I+G  ++ A ++FD    
Sbjct: 277 GATANLEFRLEA-GLDANASDTETLTFRNGSGRTAQLEKDIIITGDSVSDANSSFDENG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+IS D  G ++  +VTR  +G+ +AVV       +  +                  
Sbjct: 335 RPQVNISLDSKGGKQMAKVTRSAVGRNMAVVFIEHKSRSRFVEQEDGSLKEVRRSYSEKG 394

Query: 309 ------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q       +I+G  +   +  LA +LRAG+L   +  VEER +G  LG+++I 
Sbjct: 395 IISLATIQTTLGNSFRITGLDSPRESSELALLLRAGALAAPIYFVEERTIGPSLGAENIK 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G  +   G+++++LFM++ Y  +G+ A+ S+ LN++L +A +SL+ ATLTLP IAGIVL
Sbjct: 455 LGVTSAQIGMLVVMLFMLIYYKVFGVFANVSLILNIVLLMAFMSLMSATLTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+  RI+EE         ++  GF+RA++TIFD+NIT L+  V+LF  G 
Sbjct: 515 TMGMAVDANVLIFSRIKEELANGLPSQQAIHSGFNRAFTTIFDANITTLLVAVILFAVGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFA+T+ L IL SMFTAI + RA +  +   +K K + I
Sbjct: 575 GPVKGFAVTLSLGILTSMFTAIVVTRAQVNLVYGGRKNKRLYI 617



 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 87/206 (42%), Gaps = 5/206 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  +   +           +GP +  E I+ G+    I  + +++++ I 
Sbjct: 415 DSPRESSELALLLRAGALAAPIYFVEERTIGPSLGAENIKLGVTSAQIGMLVVMLFMLIY 474

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +K  F + A  +LIL+I   + F +L      L  +A ++  +G +V+  V+++ R+++ 
Sbjct: 475 YKV-FGVFANVSLILNIVLLMAFMSLMSATLTLPGIAGIVLTMGMAVDANVLIFSRIKEE 533

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +      +  +  I    N         ++   +  + +   G   +  FA+ ++ GI+ 
Sbjct: 534 LA---NGLPSQQAIHSGFNRAFTTIFDANITTLLVAVILFAVGTGPVKGFAVTLSLGILT 590

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +  ++I +    +  +Y  R KN R+
Sbjct: 591 SMFTAIVVTRAQVNLVYGGR-KNKRL 615



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 60/223 (26%), Gaps = 33/223 (14%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +   G++ ALPN  P                             L++ 
Sbjct: 4   KYPLWKYLLILAVLVFGVVYALPNLYPDDPA-------------------------LQIS 38

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ- 120
                +   +      R+ L K GI + +        TL F +   +      +   L  
Sbjct: 39  TQKATSTVDERTLKTARNALDKAGIELKAAELTSAGGTLRFDNGEDQLAAKPVIAAALGD 98

Query: 121 ---GVNSKLNVDPKKNLLVTTTEKEISIVL---SQNNIDQVISHAIEQSMEIIRQRIDQI 174
                 + +   P     +     ++ + L       ++     A++Q +E+    +   
Sbjct: 99  GYVTALNLVPTTPDWLASLGAGPAKLGLDLRGGVHFLLEVDTPAALKQRLEVAGSEMKAA 158

Query: 175 GISESTIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
              E    R       ++ +   +D  R             + 
Sbjct: 159 LRKERIRYRSVEIKDGVMSIRFLKDSDRDLAESLLKDDFGDYL 201


>gi|255067979|ref|ZP_05319834.1| protein-export membrane protein SecD [Neisseria sicca ATCC 29256]
 gi|255047756|gb|EET43220.1| protein-export membrane protein SecD [Neisseria sicca ATCC 29256]
          Length = 617

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 169/506 (33%), Positives = 277/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  +++E I
Sbjct: 104 NLLADSPEWMAKIGANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRREMRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQI+N + +   D+   +    K+       N            +      I++ 
Sbjct: 164 RTGTIRQIENGLIVPMQDAADVQKAMPKLRQLFPEAN------------LNADGNNITLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  I++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAINKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRD--------SDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  +  K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPVKVREALEGNVPSGFELLSSGGDHPETLLINKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRSAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G   
Sbjct: 391 GRVEISGSMTQAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFTA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           + LFM+V Y   G  +  ++  N++  + +LS + ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VALFMVVYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R+      ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELREGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 83/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +    A+ 
Sbjct: 393 VEISGSMTQAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFTAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 LFMVVYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRE---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 38.9 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L +    + ++ +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIACSILVAVVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK+ GI    M    N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALKQAGIQTDGMFVANNSLKVRFKDTETQLKARDVIENTL 95


>gi|119468100|ref|ZP_01611226.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Alteromonadales bacterium TW-7]
 gi|119448093|gb|EAW29357.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Alteromonadales bacterium TW-7]
          Length = 619

 Score =  216 bits (550), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 160/523 (30%), Positives = 264/523 (50%), Gaps = 38/523 (7%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
               P  +     N + LGLDL GG H  +E+D    V+  L+    + RS L++E +  
Sbjct: 106 APAQPLWLKSLGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEQDFRSDLREEKLRY 165

Query: 89  FSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            S+R+    +++ +   +   K      +                  +  ++ +      
Sbjct: 166 RSVRRVAGSDRMRVEMRNEEDKNAAERFLESRYPL---------NVYIDDSSNDNAFFAT 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+  + ++  +AI+Q+  IIR RI+QIG++E  +QR G+ RI++QLPG QD +R +++L
Sbjct: 217 MSEQKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPGVQDTARAKEIL 276

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V  N             G   +   DG   +++ ++ + G H+ GA +  
Sbjct: 277 GATATLEFREVDENADPSAAAQGRIPAGTEMIMSRDGYPVVLKKRIILEGSHITGAQSGA 336

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
           D      V      + G++      R    +   V ++ +                   +
Sbjct: 337 DEYQRPQVSISLDSKGGSKMNAFTKRAIGKRMATVFIEYKPSGKKDENGKALPPIKVEEV 396

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 QA      +I+G      A  L+ +LRAG+L   + IVEER VG  LG ++I  
Sbjct: 397 INVATIQARLDRSFRITGIDNPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIEA 456

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A+  G   ++ FM++ Y  +GLVA+ ++  N++L + ++SL+  ATLTLP IAGIVL
Sbjct: 457 GMTAVALGFAFVLAFMLIYYKGFGLVANLALAANLVLIVGIMSLIPGATLTLPGIAGIVL 516

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE    +S   ++  G+  A+STIFD+NIT LIA V+LF  G 
Sbjct: 517 TVGMAVDANVLIFERIREELADGRSPQQAVHFGYDSAFSTIFDANITTLIAAVILFAVGT 576

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G + GFA+T+ + IL SMFTAI   RA++   I  K++  + I
Sbjct: 577 GPIAGFAVTLAIGILTSMFTAIVGTRAVINLFIGGKRIDKLSI 619



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 76/175 (43%), Gaps = 5/175 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP + +E I  G+  V +    +L ++ I +K  F L A   L  ++   +G  +L  G 
Sbjct: 446 GPSLGQENIEAGMTAVALGFAFVLAFMLIYYK-GFGLVANLALAANLVLIVGIMSLIPGA 504

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              L  +A ++  +G +V+  V++++R+R+ +       S +  +    +         +
Sbjct: 505 TLTLPGIAGIVLTVGMAVDANVLIFERIREELAD---GRSPQQAVHFGYDSAFSTIFDAN 561

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +   I+ + +   G   I  FA+ +A GI+ +  ++I     ++      +  + 
Sbjct: 562 ITTLIAAVILFAVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVINLFIGGKRIDK 616



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 90/288 (31%), Gaps = 38/288 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  IGLL A PN   +                            ++V 
Sbjct: 4   KFPVWKYLLVLAVVAIGLLYASPNLYGRDPA-------------------------IQVS 38

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
                +  L    D++ + LKK  + V S +    +I + F +   +    D +   L  
Sbjct: 39  GAKGADVDL-SVVDKVNATLKKHNVAVKSTKLEGGQILVRFKNVEEQLKAQDLLRDSLSD 97

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI----------DQVISHAIEQSMEIIR-Q 169
              S +N+ P + L + +       +    +              + + +EQ  +  R  
Sbjct: 98  DYISAINMAPAQPLWLKSLGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEQDFRSD 157

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
             ++     S  +  GS R+ +++  E+D +   + L +   ++ +    +N    F   
Sbjct: 158 LREEKLRYRSVRRVAGSDRMRVEMRNEEDKNAAERFLESRYPLNVYIDDSSNDNAFFATM 217

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                    +  + +++  I         A  + +       I     
Sbjct: 218 SEQKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPG 265


>gi|237736822|ref|ZP_04567303.1| translocase subunit secD [Fusobacterium mortiferum ATCC 9817]
 gi|229420684|gb|EEO35731.1| translocase subunit secD [Fusobacterium mortiferum ATCC 9817]
          Length = 316

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 85/290 (29%), Positives = 155/290 (53%), Gaps = 2/290 (0%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I  ++     +G+S++  + S+ ++ T GLNYGIDF GG    +   + V L+ + S L+
Sbjct: 3   IGIVKNTKKFLGLSVVLVVLSLAVILTRGLNYGIDFSGGSLTQIKFEKVVSLAEINSVLD 62

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           ++            +                     + + + +  +     I   E VG 
Sbjct: 63  NVAKNIPQLSGNSRKVQVSEGNTVIIRTQELTEAQKDALLESLNTVG-KYDIDKVEKVGA 121

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I +EL    +  ++I A+ ++ YI +RF++ F+LGAI  LI D+   +G  +L G E +
Sbjct: 122 SIGKELKTSAVYSLLIGAVLIVAYITVRFEFIFSLGAIIALIHDLIIAIGVISLLGYEVD 181

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMA 778
              +AAVLT++GYS+ND +VV+DR+R+N+K  T   ++F +L+DKSIN+ + RS+ TS+ 
Sbjct: 182 TPFIAAVLTILGYSINDTIVVFDRIRENIKRKTKQKLTFEELLDKSINQVMIRSINTSVT 241

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              +++ + ++GG  + +F + +  GI+    SS+FIA PI+  +   + 
Sbjct: 242 TLFAIIAILIFGGDSLRTFIVTLLVGILAGTYSSVFIATPIVYLLDKKKR 291


>gi|293607156|ref|ZP_06689498.1| protein-export membrane protein SecD [Achromobacter piechaudii ATCC
           43553]
 gi|292814490|gb|EFF73629.1| protein-export membrane protein SecD [Achromobacter piechaudii ATCC
           43553]
          Length = 626

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 181/518 (34%), Positives = 281/518 (54%), Gaps = 24/518 (4%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             + LL A P ++                + LGLDLRGG H +L+VD    +       +
Sbjct: 110 VALNLLPASPAWMRAM------GWFAPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLA 163

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            ++RS L+ + + V  + +    +  +FA++  ++     +   L  +      +  K L
Sbjct: 164 ADVRSVLRDQKVNVTGVERSGMGVAATFANNDDRDRAIATLRTRLPDLEFTEREEAGKPL 223

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
           L+               + +V   A++Q++  +  RI+++G++E  IQ+ G+ RI++QLP
Sbjct: 224 LLGALNPA--------AVQRVQDSALKQNINTLHNRINELGVAEPVIQQQGADRIVVQLP 275

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248
           G QD ++ ++LLG TA +    V    + +         FG+    D DG   LV  +V 
Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDTPTAQAALLGGTVPFGLERYNDRDGRPILVRRQVV 335

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304
           ++G +L  A    D +T +  V ++ D  GAR F +VTRDNIGK +         G V+T
Sbjct: 336 LTGENLQDAQPGRDTQTQQAAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           APVI   I  G+ QISG+ + E A   A +LRAG+L   ++IVEER +G  LG+D+I KG
Sbjct: 396 APVIRSEIAGGQVQISGSMSSEEAADTALLLRAGALAAPMSIVEERTIGPSLGADNISKG 455

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             + + G + I +F+I+ Y  +G+ +   + LNV+L LALLS+L ATLTLP IA I L +
Sbjct: 456 FHSTLYGFLAIAVFIILYYHLFGVFSTIGLTLNVLLLLALLSMLQATLTLPGIAAIALTL 515

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+A+DSN+L+NERIREE R   +   ++  GF RA+ TI DSN+T LI  + L  FG G 
Sbjct: 516 GMAIDSNVLINERIREELRAGATPQQAIHQGFERAWGTILDSNLTTLIVGLALLAFGSGP 575

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +RGFA+   L IL SMF+++  VRA+       KK  +
Sbjct: 576 IRGFAVVHCLGILTSMFSSVVGVRALANLYYGRKKKLT 613



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 84/209 (40%), Gaps = 4/209 (1%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G   ++      +  +   +    +I     +GP +  + I KG    +   +A+
Sbjct: 407 QVQISGSMSSEEAADTALLLRAGALAAPMSIVEERTIGPSLGADNISKGFHSTLYGFLAI 466

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++I + +   F + +   L L++   L   ++      L  +AA+   +G +++  V++
Sbjct: 467 AVFIILYYHL-FGVFSTIGLTLNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLI 525

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
            +R+R+ ++      + +  I +      G  + +++   I  L +  +G   I  FA+ 
Sbjct: 526 NERIREELRA---GATPQQAIHQGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              GI+ +  SS+     +    Y  + K
Sbjct: 583 HCLGILTSMFSSVVGVRALANLYYGRKKK 611



 Score = 38.9 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 36/124 (29%), Gaps = 21/124 (16%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I   +   IGLL  LPNF  +S   +                   S     + 
Sbjct: 3   RYPLWKYITVLIAVIIGLLYTLPNFYGESPAVQV------------------SSAKATIK 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D  +   ++    + +  +  +G+       +   +   F  +  +    D +   L  
Sbjct: 45  VDAAMLSRVEQILTDAK--IPNQGVYYEQNGTLG-TVRARFTSTDLQLQARDLLDKSLNT 101

Query: 122 VNSK 125
           V   
Sbjct: 102 VAGD 105


>gi|261363702|ref|ZP_05976585.1| protein-export membrane protein SecD [Neisseria mucosa ATCC 25996]
 gi|288568258|gb|EFC89818.1| protein-export membrane protein SecD [Neisseria mucosa ATCC 25996]
          Length = 617

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 169/506 (33%), Positives = 277/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  +++E I
Sbjct: 104 NLLADSPEWMAKIGANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRREMRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQI+N + +   D+   +    K+       N            +      I++ 
Sbjct: 164 RTGTVRQIENGLIVPMQDAADVQKAMPKLRQLFSEAN------------LNADGNNITLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  I++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAINKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF--------LRDSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  +  K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPVKVREALEGNVPSGFELLSSSGDHPESLLINKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRSAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G   
Sbjct: 391 GRVEISGSMTQAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           + LFM+V Y   G  +  ++  N++  + +LS + ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VALFMVVYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R+      ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELREGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 83/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +    A+ 
Sbjct: 393 VEISGSMTQAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 LFMVVYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRE---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L +    + ++ +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIACSILVAVVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK+ GI    +    N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALKQAGIQTDGIFIANNSLKVRFKDTETQLKARDVIENTL 95


>gi|241760374|ref|ZP_04758469.1| protein-export membrane protein SecD [Neisseria flavescens SK114]
 gi|241319252|gb|EER55730.1| protein-export membrane protein SecD [Neisseria flavescens SK114]
          Length = 617

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 164/508 (32%), Positives = 274/508 (53%), Gaps = 28/508 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + Y+ ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYAGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++ Q +N +T+   D+   +    ++                    +      I + 
Sbjct: 164 RTGTVHQAENGLTVPLQDAADVQKALPQLQKMFPEA------------TLVADGNNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  I++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAINKVRSDAVKQNINTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPN--------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  +        N      + +           LV  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPIKLQEALNGNVPTGYELLSSGGDHPETILVNKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTSANVGKRMAMVLIDQGKSEVVTAPVIRSAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G   
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM++ Y   G  +  ++  N++  + +LS + ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VAAFMVIYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   +
Sbjct: 511 NERIREELRGGIPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKMKS 522
            IL SM++++ + RA++      ++   
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRKLR 598



 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +    A+ 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ I ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVIYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     I  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRG---GIPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 39.3 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L +    +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIAFTIVVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ S L+  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVSSALQSAGIQTDGMFIVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|332288531|ref|YP_004419383.1| preprotein translocase subunit SecD [Gallibacterium anatis UMN179]
 gi|330431427|gb|AEC16486.1| preprotein translocase subunit SecD [Gallibacterium anatis UMN179]
          Length = 603

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 161/524 (30%), Positives = 287/524 (54%), Gaps = 41/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +       + LGLDLRGG   ++EVD    +    +   D LR+ L+KE  
Sbjct: 93  NLAPATPTWLTDIGAGPMKLGLDLRGGVRFLMEVDLKSVLAKQQEQLQDSLRTELRKEKF 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              +++  +N    ++ AD+    ++   +                 N  V +  + +++
Sbjct: 153 VYKAIQSGENYSTVITLADNISPSDVVRVLKRK------------HANWDVVSNGQNVTL 200

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS+N + ++   A+EQ++ I+R+R++++G++E  +Q+ G+ RI+++LPG QD +R +++
Sbjct: 201 TLSENELTRLRKSAVEQNITILRKRVNELGVAEPVVQQQGADRIVVELPGVQDTARAKEI 260

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    +      G+         D +G   +V  K  + G H+     +
Sbjct: 261 LGATATLEFRMVNQTANLAAAENGMVPSDSELQHDRNGTPVVVYRKTILGGEHITD-ANS 319

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            + +  +P V+IS D  G     E T+  IGKP+A V      +                
Sbjct: 320 GNDEYGRPQVNISLDSEGGNMMSEATKTAIGKPMATVYSEYKDSGKKDENGKAILTKHEE 379

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q+      +I+G  +   A  L+ +LR+G+L   + IVEER +G  LG+ +I 
Sbjct: 380 VINVATIQSRLGNTFRITGINSPAEAQNLSVLLRSGALIAPIQIVEERTIGPSLGAQNIE 439

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A   GL+++VLFM + Y K+GL+A+ ++  N+++ + L+SL+  ATL++P IAGIV
Sbjct: 440 QGMQASFWGLLIVVLFMALYYRKFGLIANLALVANIVILVGLMSLIPGATLSMPGIAGIV 499

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G++VD+N+L+ ERI+EE R  +SV  +++ G+S A+S+IFD+N+T ++  V+L+  G
Sbjct: 500 LSVGMSVDANVLIFERIKEELRNGRSVQQAINEGYSGAFSSIFDANLTTILTAVILYAVG 559

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G V+GFAIT+ L + ISMFTAI+  RA++ F+   K++  + I
Sbjct: 560 SGPVKGFAITLSLGVAISMFTAITGTRAVVNFLYGGKRISKLSI 603



 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 84/174 (48%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+       + +++++ + ++  F L A   L+ +I   +G  +L  
Sbjct: 428 TIGPSLGAQNIEQGMQASFWGLLIVVLFMALYYR-KFGLIANLALVANIVILVGLMSLIP 486

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G SV+  V++++R+++ ++      S +  I++  +        
Sbjct: 487 GATLSMPGIAGIVLSVGMSVDANVLIFERIKEELR---NGRSVQQAINEGYSGAFSSIFD 543

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   ++ + +   G   +  FAI ++ G+ ++  ++I     ++ F+Y  + 
Sbjct: 544 ANLTTILTAVILYAVGSGPVKGFAITLSLGVAISMFTAITGTRAVVNFLYGGKR 597


>gi|294338529|emb|CAZ86858.1| protein-export membrane protein SecD [Thiomonas sp. 3As]
          Length = 656

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 182/514 (35%), Positives = 291/514 (56%), Gaps = 21/514 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            +   N L +S    + +A+  N + LGLDLRGG H +L+VD    V+  L   S ELR 
Sbjct: 103 YVVAVNLLSRSP--AWLTALNANPMYLGLDLRGGVHFLLQVDMQAAVHKKLDSISGELRR 160

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+ +      + ++ + +   F D+       + +T      +  L + P+        
Sbjct: 161 DLRDKDARYTKLERVGDTLQGVFVDASALNTAKELITRQ----HPDLQLAPQAP----AG 212

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +S  L+   + Q   +AI+Q+++ +  RI+++G++E  IQ+ G  R++++LPG QD 
Sbjct: 213 SYSLSASLTPAAVSQEEDYAIKQNIQTLHNRINELGVAEPIIQQQGRDRVVVELPGIQDV 272

Query: 200 SRLRQLLGTTAKMSFHKVLP-------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           +R + +LG TA +    V            +     G +   D DG + +V+  V ++G 
Sbjct: 273 ARAKDILGRTASLEVRMVDDSAAAQAALAGQGPLPAGDQIFPDRDGGKLVVKRDVLLTGD 332

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVI 308
           +L  A   FD +T++P V ++ D  G+R F +VTR+N+GK  A++L  R    ++TAPVI
Sbjct: 333 NLTDAQPGFDQQTNEPAVFLTLDSKGSRIFQQVTRENVGKRTAMILFDRGRGEIITAPVI 392

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I  G+ QISG+ T++ A   A +LRAG+L   +NI+EER VG  LG  +I +G  ++
Sbjct: 393 RSEIAGGRVQISGHMTVQEANDTALLLRAGALAAPMNIIEERTVGPSLGQQNISQGFHSV 452

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
             G V IV+FM + Y  +G+V+   + +N++L +A+LS+L ATLTLP IA + L +G+A+
Sbjct: 453 TWGFVAIVIFMSIYYMFFGVVSSIGLAVNLLLLVAVLSMLQATLTLPGIAAMALALGMAI 512

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           DSN+L+NERIREE R   S   ++  G+ RA++TIFDSN+T LIA V L  FG GA+RGF
Sbjct: 513 DSNVLINERIREELRNGASPQNAIFHGYERAWATIFDSNVTTLIAGVALLIFGSGAIRGF 572

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           A+   L IL SMF+A+   R ++      K+   
Sbjct: 573 AVVHVLGILTSMFSAVFFSRGIINLWYGRKRRLH 606



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 88/208 (42%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G    Q      +  +   +     I     VGP + ++ I +G   V    +A++
Sbjct: 401 VQISGHMTVQEANDTALLLRAGALAAPMNIIEERTVGPSLGQQNISQGFHSVTWGFVAIV 460

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++ I + + F + +   L +++   +   ++      L  +AA+   +G +++  V++ 
Sbjct: 461 IFMSIYYMF-FGVVSSIGLAVNLLLLVAVLSMLQATLTLPGIAAMALALGMAIDSNVLIN 519

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      S ++ I             +++   I+ + + ++G   I  FA+  
Sbjct: 520 ERIREELR---NGASPQNAIFHGYERAWATIFDSNVTTLIAGVALLIFGSGAIRGFAVVH 576

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  S++F +  I+   Y  + +
Sbjct: 577 VLGILTSMFSAVFFSRGIINLWYGRKRR 604


>gi|292487441|ref|YP_003530313.1| protein-export membrane protein SecF [Erwinia amylovora CFBP1430]
 gi|292898683|ref|YP_003538052.1| protein-export membrane protein [Erwinia amylovora ATCC 49946]
 gi|291198531|emb|CBJ45639.1| protein-export membrane protein [Erwinia amylovora ATCC 49946]
 gi|291552860|emb|CBA19905.1| Protein-export membrane protein secF [Erwinia amylovora CFBP1430]
 gi|312171544|emb|CBX79802.1| Protein-export membrane protein secF [Erwinia amylovora ATCC
           BAA-2158]
          Length = 322

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 163/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            S   +        FM        IS +  I ++ ++   G N+G+DF GG  + +   +
Sbjct: 5   HSVEQMNHGRKVYDFMHWDKLAFIISGILLIIAVAIIGVRGFNWGLDFTGGTVIEINLEQ 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL ++R +L+     +   QNF   ++ +VR+    G+   +    +++         
Sbjct: 65  PADLDMMRGSLQKAGFAEPQVQNFGSSRDVMVRMAPAEGN-AGEALGSKVLGIVNEATGQ 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+L YI  RF+W  ALG +  L  D+  T
Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGGMALLSALIAILFYIGFRFEWRLALGTVLALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+NDK+VV DR+R+N +      S+ D+ + S+ +
Sbjct: 184 MGLLSLFQIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS+     VL + ++GG+++  F++ M  GI +   SSI++++ + L +   R
Sbjct: 243 TLSRTIITSVTTLAMVLILFIFGGALLKGFSLTMLIGITIGTISSIYVSSALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|269121336|ref|YP_003309513.1| protein-export membrane protein SecF [Sebaldella termitidis ATCC
           33386]
 gi|268615214|gb|ACZ09582.1| protein-export membrane protein SecF [Sebaldella termitidis ATCC
           33386]
          Length = 308

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 81/289 (28%), Positives = 149/289 (51%), Gaps = 2/289 (0%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           M+ R      S    + S+  +FT G N GIDF GG    +   +PV    +   L+ + 
Sbjct: 6   MKTRNVYFIFSTFMILFSLFSIFTKGFNLGIDFTGGNIYQMKFEKPVSKEAMDKTLKEMA 65

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
               S +    +  +           +A  +    + +++        +   + VG  + 
Sbjct: 66  SKYPSLK--SNKVQYSEGNTVLLRTQIADEKEKSAILEELKAEQGNYELIKADAVGAVVG 123

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            EL +  +  + + +I +LIYI IRF+W +AL ++  L+ D+  T+GF + F  E +   
Sbjct: 124 NELAKNALWALALGSILILIYITIRFEWIYALSSVLALLHDVLVTIGFISFFQFEVDTPF 183

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +AA+LT++GYS+ND +V++DR+R+N   Y     F D+ID+S+N+   RSVYTS+   ++
Sbjct: 184 IAAILTILGYSMNDTIVIFDRIRENDHKYGGKKPFADVIDESVNKVFIRSVYTSLTTLLA 243

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  + ++GGS + +F I +  GIV    SSI++A+P++  +  ++    
Sbjct: 244 LAALLIFGGSTLRTFNITLLVGIVYGTYSSIWLASPLVYLLRRFKKPPK 292


>gi|261341002|ref|ZP_05968860.1| protein-export membrane protein SecD [Enterobacter cancerogenus
           ATCC 35316]
 gi|288316866|gb|EFC55804.1| protein-export membrane protein SecD [Enterobacter cancerogenus
           ATCC 35316]
          Length = 604

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 170/537 (31%), Positives = 294/537 (54%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 89  VVALNLAPATPRWLAALNAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQN 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LRS L+++GI   ++R+  N  ++++F D   ++     +T   +            
Sbjct: 140 IDSLRSDLREKGIAYTTVRKEDNYGLSITFRDGAARDQAVTYLTQRHR-----------D 188

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ +    ++  V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++
Sbjct: 189 LVITSQGSNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVE 248

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N  +     G         +  +G   ++  +V
Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREGQPVVLYKRV 308

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302
            ++G H+  +T++   + ++P V+IS D  G       T+DNIGKP+A +          
Sbjct: 309 ILTGDHITDSTSS-QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKK 367

Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                        +      Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 368 DANGRSVLVKEEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEE 427

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG  +I +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL 
Sbjct: 428 RTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIIGIMSLLP 487

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE    +SV  +++ G+  A+S+IFD+N+
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIEEGYKGAFSSIFDANV 547

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 548 TTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  S+ + +    N    ++ L       G +         +  +   
Sbjct: 358 FVEYKDSGKKDANGRSVLVKEEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  I++
Sbjct: 477 VLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIEE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I VL +   G   I  FAI    G+  +  ++I     I+  +
Sbjct: 534 GYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 594 YGGKRVKK 601


>gi|114046955|ref|YP_737505.1| preprotein translocase subunit SecD [Shewanella sp. MR-7]
 gi|113888397|gb|ABI42448.1| protein-export membrane protein SecD [Shewanella sp. MR-7]
          Length = 616

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 160/522 (30%), Positives = 279/522 (53%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + RS L++E I
Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D+    +    +             D   + +    +  +  V
Sbjct: 164 RYAGIRNNAQGIEIKFRDAESLASAERFLKSRSN--------DMVFSDVSKGEDFALQAV 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+  + Q+   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 MSETYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V                G    +  +G Q +++ +V ++G H+ GA  +F
Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRVPAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           D  + +P V I+ D  G   F  VT+DNIGKP+A +      +           +     
Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394

Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                  A  LA +LRAG+L   ++IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+ ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 VQAMIWGMAVVLIFMLVYYRSFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           A++GFA+T+ + I  SMFTAI   R+++  I   K++K++ I
Sbjct: 575 AIKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI 616



 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 93/241 (38%), Gaps = 6/241 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  R+   S+++  I            +   +              +  +   ++   +
Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     +GP +  E I  G+  +I     +LI++ + ++  F L A   L  ++   +G 
Sbjct: 436 IVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYR-SFGLIANLALTANLVMVVGV 494

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +      
Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828
                 ++  F++ L +   G   I  FA+ +  GI  +  ++I     I+       R 
Sbjct: 552 STIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRV 611

Query: 829 K 829
           K
Sbjct: 612 K 612


>gi|319944504|ref|ZP_08018775.1| protein-export membrane protein SecD [Lautropia mirabilis ATCC
           51599]
 gi|319742217|gb|EFV94633.1| protein-export membrane protein SecD [Lautropia mirabilis ATCC
           51599]
          Length = 625

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 152/529 (28%), Positives = 269/529 (50%), Gaps = 28/529 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL A P +L Q              + LGLDLRGG H ++++D  + +N  L   
Sbjct: 105 ITALNLLSASPTWLTQLHA---------LPMYLGLDLRGGVHFLMQIDTTEALNKRLDSA 155

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             ++R+ L+   +    +++   ++ L F         ++      Q +      D    
Sbjct: 156 MADVRTLLRDRKVRHNGIKRNGKQLVLDF--------ASEDARTRAQELLRDNQADLAVQ 207

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
              +  + ++ + L+++ +   + ++++Q++  +  RI+++G++E  IQR G+ RI++QL
Sbjct: 208 ERGSGAQSQLLLTLTESAMRTFLDNSVQQNITTLNNRINELGVAEPVIQRQGADRIVVQL 267

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF--------MFGVRFLRDSDGNQYLVED 245
           PG QD +R + +LG TA +    V  +   +           FG    R   G   ++  
Sbjct: 268 PGVQDTARAKDILGRTATLEARLVDMSPEAQRALTSENGVVPFGSDLFRQGRGAPVVLRR 327

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
           +   +G  L  A+A FD      V     +  G        ++       V+ +      
Sbjct: 328 EPIFTGQQLTNASATFDEHQQPAVAVSLNEAGGRHLREVSRKNIHKPMAVVLFEKGKGEV 387

Query: 306 PVI--NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
             +   Q+    + QI+G  + + AG LA +LRAG+L   ++I+EER +G  LG+++I K
Sbjct: 388 LTVATIQSELGSRFQITGMGSAKNAGDLALLLRAGALAAPMDIIEERTIGPSLGAENISK 447

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  ++  G + I +FMIV Y  +GL +  ++  N+++ +A+LSLL ATLTLP IA I L 
Sbjct: 448 GFQSVTWGFLAIAVFMIVYYLLFGLFSTVALGFNLLMLVAVLSLLQATLTLPGIAAIALT 507

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+A+D+N+L+NER+REE RK  S   ++  G+  A++TI D+NIT LIA + L  FG G
Sbjct: 508 LGMAIDANVLINERVREELRKGASPQMAISAGYEHAWATILDANITTLIAGLALLAFGSG 567

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFII-RYKKMKSIDINPLSRF 531
            ++GFA+   L IL SMF+A+ + R ++       K++K + +      
Sbjct: 568 PIKGFAVVHCLGILTSMFSAVFVSRGLVNLWYGGKKRVKHLSVGQSDWH 616



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 84/205 (40%), Gaps = 4/205 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A+      +  +   +     I     +GP +  E I KG   V    +A+ +++ + +
Sbjct: 408 SAKNAGDLALLLRAGALAAPMDIIEERTIGPSLGAENISKGFQSVTWGFLAIAVFMIVYY 467

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              F L +   L  ++   +   +L      L  +AA+   +G +++  V++ +R+R+ +
Sbjct: 468 -LLFGLFSTVALGFNLLMLVAVLSLLQATLTLPGIAAIALTLGMAIDANVLINERVREEL 526

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      S +  I           +  ++   I+ L +  +G   I  FA+    GI+ +
Sbjct: 527 R---KGASPQMAISAGYEHAWATILDANITTLIAGLALLAFGSGPIKGFAVVHCLGILTS 583

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
             S++F++  ++   Y  + +   +
Sbjct: 584 MFSAVFVSRGLVNLWYGGKKRVKHL 608



 Score = 45.1 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 32/120 (26%), Gaps = 25/120 (20%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   L  +     L+  LPNF  +S                           +++ 
Sbjct: 3   RYPFWRYALIGLALIFSLIYTLPNFYGESPA-------------------------VQIS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                         +  + L K GI    + +  N + + F  +  +    D +   +  
Sbjct: 38  SQKATIKVDAATESQALAALDKAGIPNTGVLRDDNSVKIRFDTTDTQLRARDVLEKAMNP 97


>gi|84517341|ref|ZP_01004695.1| protein-export membrane protein SecF [Loktanella vestfoldensis
           SKA53]
 gi|84508821|gb|EAQ05284.1| protein-export membrane protein SecF [Loktanella vestfoldensis
           SKA53]
          Length = 322

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 110/310 (35%), Positives = 182/310 (58%), Gaps = 7/310 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P+   I F R  +   G S L  + S+ +   +GLN+GIDF+GG  +   + + 
Sbjct: 1   MRLRLVPEQTNINFFRYAWLSFGASALMVVMSLVVFVVYGLNFGIDFRGGTSIRTESTQS 60

Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD++  R  L  L++GD            D +   ++R+Q Q GD     + +  ++  +
Sbjct: 61  VDVAAYREALNPLELGDISITQVFDPTFDDDQNVAMIRIQAQDGDESISPQTIAQIQDAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             + P  T  + E VGPK+S ELIR  ++ V+ +  A++IYIW+RF+W FA+GA+  LI 
Sbjct: 121 RGVAPDITFPSVESVGPKVSGELIRTAVMAVLGALTAIVIYIWLRFEWQFAVGAVAALIH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F++F I F+L  +AA+LT++GYS+ND VVV+DR R+N++ Y  +    D+++
Sbjct: 181 DVALTIGIFSMFQIRFDLAIIAALLTIVGYSINDTVVVFDRARENLRKY-KAKPLVDVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            S NETL R++ TS    I+++ + V GG VI  F   +A+GI+V   SS+++A  I+L 
Sbjct: 240 LSANETLSRTIMTSGTTLIALIALLVLGGDVIRGFVFAIAWGIIVGTYSSLYVAKNIVLM 299

Query: 823 IYDWRAKNAR 832
           +   R  + +
Sbjct: 300 LGVKRDWSKK 309


>gi|121606773|ref|YP_984102.1| preprotein translocase subunit SecD [Polaromonas naphthalenivorans
           CJ2]
 gi|120595742|gb|ABM39181.1| protein-export membrane protein SecD [Polaromonas naphthalenivorans
           CJ2]
          Length = 625

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 158/514 (30%), Positives = 277/514 (53%), Gaps = 20/514 (3%)

Query: 19  LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78
             +   N L +S    + +++  N + LGLDLRGG H +L+VD    +    +  + ++R
Sbjct: 103 AYVVALNLLSRSP--AWLTSLNANPMYLGLDLRGGVHFMLQVDMQAALTKRAESLAGDIR 160

Query: 79  SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT 138
             L+++ I    + +    I + F DS    +  + +   +         D +       
Sbjct: 161 LSLREKNIRHGGIARNGQAIEIRFRDSATLTSAKNLIQDQI--------PDLQMVEAPDG 212

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
           T+ +++  +      ++   A++Q+M  +  RI+++G++E  IQ+ G  RI++QLPG QD
Sbjct: 213 TDYKLTATIKPEAARRIQDQALKQNMVTLHNRINELGVAEPVIQQQGIDRIVVQLPGVQD 272

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------DGNQYLVEDKVEISG 251
            ++ + +LG TA +    V  +   +    G   +          +G   +V+ +V ++G
Sbjct: 273 TAKAKDILGRTATLEMRLVEDSAEARAAESGSGPVPFGSERFFERNGQAVIVKKQVILTG 332

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVI 308
            +L  A   FD +  +P VD++ D  G R   + +R+N+ K +A++L  +    +    +
Sbjct: 333 ENLTDAQPGFDSQNQQPKVDLTVDAKGGRIMRDTSRENLKKRMAILLFEKGKGEVLTAPV 392

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q     + QISG+ ++  A  LA +LRAGSL   ++I+EER +G  LG+++I KG  ++
Sbjct: 393 IQGELGNRFQISGSMSVNEASDLALLLRAGSLAAPMDIIEERTIGPTLGAENITKGFHSV 452

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
             G  +IV FM   Y  +GL +  ++ +N++L +A+LS+L ATLTLP +A + L +G+A+
Sbjct: 453 SWGFAVIVAFMATYYMLFGLFSGIALAVNLLLLVAVLSMLQATLTLPGMAAMALALGMAI 512

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           DSN+L+NERIREE R   S   ++  G+ RA++TI DSNI+ LIA + L  FG G VRGF
Sbjct: 513 DSNVLINERIREELRNGASPQAAIHAGYERAWATILDSNISTLIAGLALLAFGSGPVRGF 572

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           A+   + IL SMF+A+   R ++      +K   
Sbjct: 573 AVVHCIGILTSMFSAVFFSRGLVNLWYGRQKKLK 606



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 82/209 (39%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G           +  +   +     I     +GP +  E I KG   V      ++ ++
Sbjct: 404 SGSMSVNEASDLALLLRAGSLAAPMDIIEERTIGPTLGAENITKGFHSVSWGFAVIVAFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F L +   L +++   +   ++      L  +AA+   +G +++  V++ +R+
Sbjct: 464 ATYY-MLFGLFSGIALAVNLLLLVAVLSMLQATLTLPGMAAMALALGMAIDSNVLINERI 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I           + ++++  I+ L +  +G   +  FA+    G
Sbjct: 523 REELR---NGASPQAAIHAGYERAWATILDSNISTLIAGLALLAFGSGPVRGFAVVHCIG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  + K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGRQKKLKTV 608



 Score = 47.4 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/120 (15%), Positives = 29/120 (24%), Gaps = 25/120 (20%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   L  ++  I  L  LPNF  ++                           ++V 
Sbjct: 3   RYPAWKYALIVVVLLIAALYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                          +   LK+  I    +      I   F D   +    D +   L  
Sbjct: 38  SSKSTVKVDTTTLARVEQALKEANISADGITLEAGSIKARFGDVDTQGKAKDAIQKALTP 97


>gi|56552793|ref|YP_163632.1| preprotein translocase subunit SecD [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241762469|ref|ZP_04760546.1| protein-export membrane protein SecD [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753481|ref|YP_003226374.1| preprotein translocase subunit SecD [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56544367|gb|AAV90521.1| protein-export membrane protein SecD [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241372971|gb|EER62638.1| protein-export membrane protein SecD [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552844|gb|ACV75790.1| protein-export membrane protein SecD [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 527

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 186/525 (35%), Positives = 302/525 (57%), Gaps = 12/525 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             W +    ++  +G+ +A+P+ LP ++  +F        I+ GLDL GGSH++LE D  
Sbjct: 5   PRWKIWSIILVLVLGVFLAIPSLLPSNLDQKFGLGALPR-INFGLDLSGGSHILLEADTA 63

Query: 64  DFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           D  +  +    + +RS + +    I +  M    ++++    D+   ++  + V     G
Sbjct: 64  DVAHQRIVTMEEMVRSQISRAQPAITIGDMSADNDQLSFMVRDNHQLDSAVEAVRTLTNG 123

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + +    D     +       I +  ++  I   ++ A+E + E++R+RID +G  E  I
Sbjct: 124 IGATGQRDWD---VRVVDGNRIVMRPTKAGIQSFVNQAMEGATEVVRKRIDSLGTREPII 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-----FMFGVRFLRDS 236
            R GS RI++Q+PG Q+PS L+ L+G TAK+ F  V  +             G + +   
Sbjct: 181 IRQGSDRIVVQVPGLQNPSALKALIGKTAKLEFKLVDDSVKSADLAQGKVPIGTQVMIAQ 240

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
            G    V+ +  ++G+ L         +   P V ISF+  G RRF EVT+ N GK  A+
Sbjct: 241 SGQPVAVQRRAIVTGVDLV-HADQTMDQNSLPAVSISFNADGGRRFAEVTQKNPGKRFAI 299

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           +LD  +L+AP IN+ I  G A I+G+FTI++A  +A  LR+GSLP+ L +VEER VG  L
Sbjct: 300 ILDNVILSAPSINEPILGGSAIITGSFTIDSANQMAIALRSGSLPVALKVVEERTVGPGL 359

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G+DSI  GT A    +V IV+FMI +YG++G+ A  ++ LN+ L LA++++LGATLTLP 
Sbjct: 360 GADSIRAGTLACSIAIVAIVIFMISVYGRFGIYASSAVILNLFLILAVMAVLGATLTLPG 419

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG+VL IG AVD+N+L+NERIREE  + ++   ++DMG+  A  TIFD+N+T  I+ ++
Sbjct: 420 IAGLVLTIGAAVDANVLINERIREEIGRGRTPVHAVDMGYKEASRTIFDANVTHAISALI 479

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           +  FG G V+GFA+ + + I+ S+FTA++  R ++   +R +  K
Sbjct: 480 MICFGSGPVKGFAVVLLIGIITSVFTAVTFTRMLVALYLRRRPAK 524



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 35/170 (20%), Positives = 77/170 (45%), Gaps = 4/170 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR G +   I+ +A++I++   +   F + A + +IL++   L   A+ G  
Sbjct: 356 GPGLGADSIRAGTLACSIAIVAIVIFMISVYG-RFGIYASSAVILNLFLILAVMAVLGAT 414

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++ +R+R+ +       +    +D    E        ++
Sbjct: 415 LTLPGIAGLVLTIGAAVDANVLINERIREEI---GRGRTPVHAVDMGYKEASRTIFDANV 471

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              IS L M  +G   +  FA+ +  GI+ +  +++     ++      R
Sbjct: 472 THAISALIMICFGSGPVKGFAVVLLIGIITSVFTAVTFTRMLVALYLRRR 521


>gi|82703542|ref|YP_413108.1| preprotein translocase subunit SecD [Nitrosospira multiformis ATCC
           25196]
 gi|82411607|gb|ABB75716.1| protein-export membrane protein SecD [Nitrosospira multiformis ATCC
           25196]
          Length = 614

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 166/518 (32%), Positives = 285/518 (55%), Gaps = 20/518 (3%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
                 +   N LP S   ++ +++    + LGLDLRGG H +LEVD    ++  L  +S
Sbjct: 94  LLGNGYMVALNLLPNSP--QWLTSIGALPMYLGLDLRGGVHFLLEVDMKGALSKALDRFS 151

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            ++R  L+++ I    + +  + I + F ++  +     ++             D     
Sbjct: 152 SDIRGSLREKKIPYAGLDKRGSLIIVKFRNAESRAQAEAEIKKNY--------PDLDLRE 203

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
              +TE  ++  L      ++   A++Q++  +R R++++G++E  IQ+ G+ R+++QLP
Sbjct: 204 ENVSTEFHLAATLRPEAQKRIQDAAVQQNITTLRNRVNELGVAEPIIQQAGADRVVVQLP 263

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEI 249
           G QD ++ + +LG TA +    V   +           FG     +  G   LV+ +V +
Sbjct: 264 GVQDTAKAKDILGRTATLEVRMVDEEHDLSAALRGQIPFGSELYSERGGGPLLVKKQVVL 323

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTA 305
           +G  +N A   F    ++P V ++ D  GAR F ++TRDN+GK +           V+TA
Sbjct: 324 TGDRINDAQPGF-DNNNQPAVHLNLDNSGARIFQQLTRDNVGKRMAILLIEKNQAEVITA 382

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           PVI + I  G+ QISG  T E A  +A +LRAG+L   ++IVEER VG  LG+++I  G 
Sbjct: 383 PVIREEIGGGRVQISGRMTSEEARDVALLLRAGALAAPMDIVEERTVGPSLGAENIESGF 442

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            + + G   I +FM + Y  +G ++  ++ +N++L + LLS+L ATLTLP +A I L +G
Sbjct: 443 NSTLYGFAAIAVFMTIYYLVFGFISVLALGVNLLLLVGLLSILQATLTLPGMAAIALTLG 502

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NERIR+E R+  +   +++ G+ RA++TI DSNIT LIA + LF FG G +
Sbjct: 503 MAIDANVLINERIRDELREGMAPQAAINAGYERAWATILDSNITTLIAGIALFAFGSGPI 562

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           +GFA+ + L IL SMF+A+ + R  +  +   ++    
Sbjct: 563 KGFAVVLCLGILTSMFSAVMVSRGFVNLVYGSRRKLER 600



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 88/212 (41%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G   ++      +  +   +     I     VGP +  E I  G    +    A+ 
Sbjct: 394 VQISGRMTSEEARDVALLLRAGALAAPMDIVEERTVGPSLGAENIESGFNSTLYGFAAIA 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ I +   F   ++  L +++   +G  ++      L  +AA+   +G +++  V++ 
Sbjct: 454 VFMTIYY-LVFGFISVLALGVNLLLLVGLLSILQATLTLPGMAAIALTLGMAIDANVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++     ++ +  I+          + +++   I+ + +  +G   I  FA+ +
Sbjct: 513 ERIRDELRE---GMAPQAAINAGYERAWATILDSNITTLIAGIALFAFGSGPIKGFAVVL 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++ ++   +  +Y  R K  R+
Sbjct: 570 CLGILTSMFSAVMVSRGFVNLVYGSRRKLERV 601



 Score = 42.8 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +  ++   +GLL  LPNF  +S   +        +   GL             
Sbjct: 3   RYPAWKYLFIAVSILLGLLYTLPNFYGESPAVQISPLRNAAKADTGL------------- 49

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        + +   LKK  +    M      I + FAD+  +    D +   L
Sbjct: 50  ------------LNRVEEALKKADLPTTGMFLEGGSIKVRFADTDTQIRARDALQSLL 95


>gi|296101529|ref|YP_003611675.1| preprotein translocase subunit SecD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295055988|gb|ADF60726.1| preprotein translocase subunit SecD [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 604

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 170/518 (32%), Positives = 290/518 (55%), Gaps = 37/518 (7%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
            R+ +A+    + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI   ++R
Sbjct: 99  PRWLAALSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIAYTTVR 158

Query: 93  QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +  N  ++++F DS  ++   D +T   +             ++      ++  V++   
Sbjct: 159 KEDNYGMSITFRDSAARDQAVDYLTQRHR-----------DLVITAQGSNQLRAVMTDAR 207

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++LG TA 
Sbjct: 208 LKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATAT 267

Query: 212 MSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  N  +     G            +G   ++  +V ++G H+  +T++   + +
Sbjct: 268 LEFRLVNTNVDQSAAASGRIPGDSEVKETREGQPVVLYKRVILTGDHITDSTSS-QDEYN 326

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------LTAPVI 308
           +P V+IS D  G       T+DNIGKP+A +                       +     
Sbjct: 327 QPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKEEEVINIAN 386

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I +G  A 
Sbjct: 387 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIQQGLEAC 446

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           +AGL + +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATLT+P IAGIVL + +A
Sbjct: 447 LAGLAVSILFMIFFYKKFGLIATSALIANLVLIIGIMSLLPGATLTMPGIAGIVLTLAVA 506

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+NERI+EE    +SV  ++D G+  A+S+IFD+N+T LI  ++L+  G GA++G
Sbjct: 507 VDANVLINERIKEELSNGRSVQQAIDEGYKGAFSSIFDANVTTLIKVLILYAVGTGAIKG 566

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 567 FAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 94/248 (37%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++ + +    N    ++ L       G +         +  +   
Sbjct: 358 FVEYKDSGKKDANGRAVLVKEEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I++G+   +      ++++   +K  F L A + LI ++
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIQQGLEACLAGLAVSILFMIFFYK-KFGLIATSALIANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  ID+
Sbjct: 477 VLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I VL +   G   I  FAI    G+  +  ++I     I+  +
Sbjct: 534 GYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 594 YGGKRVKK 601


>gi|288574630|ref|ZP_06392987.1| protein-export membrane protein SecF [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570371|gb|EFC91928.1| protein-export membrane protein SecF [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 292

 Score =  216 bits (549), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 149/289 (51%), Gaps = 8/289 (2%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              FM  R   + +S++  + S+  LF+ GLN GIDF GG  + +    PV++  VR  L
Sbjct: 8   RFDFMAFRKKAMVLSMVLLLVSLGSLFSRGLNLGIDFTGGNLVQLEFGSPVEVGEVRDVL 67

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
             +       Q +  +                +      V   +        +   E VG
Sbjct: 68  AGVGQDKAVIQAYSDKG-------VIIRMKADEEDARRDVLNALKAKYDSVQVLRFEKVG 120

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P +  +L ++  + + ++ + +LIYI +RF++ FA+ ++  L+ D   TLG F++ G E 
Sbjct: 121 PVVGDQLRKEAFIALGLALVGILIYITVRFQFRFAVVSVLALLHDSIITLGIFSIMGREI 180

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           ++T +AA+LT++GYS+ND +VV DR+R+N   +        L + S+N+TL R++ TS+ 
Sbjct: 181 SVTFIAAILTIVGYSLNDTIVVLDRVRENW-KHLRGWGIDGLFNVSVNQTLSRTINTSLT 239

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            F+ VL   +WGG V+ +F+  +  GIVV   SSI++A+ IL   +   
Sbjct: 240 TFLPVLAFYIWGGPVLSNFSFALMVGIVVGTYSSIYVASSILDEWFTKS 288


>gi|77359288|ref|YP_338863.1| preprotein translocase auxillary membrane component
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874199|emb|CAI85420.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 619

 Score =  216 bits (548), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 160/519 (30%), Positives = 266/519 (51%), Gaps = 35/519 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             +  A+  N + LGLDL GG H  +E+D    V+  L+   ++ RS L++E +   S+R
Sbjct: 110 PAWLKAVGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEEDFRSDLREEKLRYRSVR 169

Query: 93  Q--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
           +    +++ +       K+     +                  +  ++ +      +S+ 
Sbjct: 170 RVAGSDRMRVEMRSEEDKDAAERFLKTQYPL---------NVYIDDSSNDNAFYATMSEQ 220

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
            + ++  +AI+Q+  IIR RI+QIG++E  +QR G+ RI++QLPG QD +R +++LG TA
Sbjct: 221 KLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPGIQDTARAKEILGATA 280

Query: 211 KMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
            + F +V  N             G   +   DG   +++ ++ + G H+ GA +  D   
Sbjct: 281 TLEFREVEENADISAAAQGRIPPGTEMIMSRDGYPVVLKKRIILEGSHITGAQSGSDEYQ 340

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------LTAPV 307
              V      + GA+      R    +   V ++ +                   +    
Sbjct: 341 RPQVSITLDSKGGAKMNAFTKRAIGKRMATVFIEYKPSGKKDADGKALPPIKVEEVINVA 400

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             QA      +I+G      A  L+ +LRAG+L   + IVEER VG  LG ++I  G  A
Sbjct: 401 TIQARLDRSFRITGIDNPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIEAGMTA 460

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGL 426
           +  G   ++ FM++ Y  +G+VA+ ++  N++L + ++SL+  ATLTLP IAGIVL +G+
Sbjct: 461 VALGFAFVLAFMLIYYKGFGMVANLALAANLVLIIGVMSLIPGATLTLPGIAGIVLTVGM 520

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+N+L+ ERIREE    +S   ++  G+  A+STIFD+NIT LIA V+LF  G G + 
Sbjct: 521 AVDANVLIFERIREELADGRSPQQAVHFGYDSAFSTIFDANITTLIAAVILFAVGTGPIA 580

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GFA+T+ + IL SMFTAI   RA++   I  K++  + I
Sbjct: 581 GFAVTLAIGILTSMFTAIVGTRAIINLFIGGKRVDKLSI 619



 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 33/172 (19%), Positives = 75/172 (43%), Gaps = 5/172 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP + +E I  G+  V +    +L ++ I +K  F + A   L  ++   +G  +L  G 
Sbjct: 446 GPSLGQENIEAGMTAVALGFAFVLAFMLIYYK-GFGMVANLALAANLVLIIGVMSLIPGA 504

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              L  +A ++  +G +V+  V++++R+R+ +       S +  +    +         +
Sbjct: 505 TLTLPGIAGIVLTVGMAVDANVLIFERIREELAD---GRSPQQAVHFGYDSAFSTIFDAN 561

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   I+ + +   G   I  FA+ +A GI+ +  ++I     I+      + 
Sbjct: 562 ITTLIAAVILFAVGTGPIAGFAVTLAIGILTSMFTAIVGTRAIINLFIGGKR 613



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 87/288 (30%), Gaps = 38/288 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +GLL A PN   +                            ++V 
Sbjct: 4   KFPLWKYLLVLAVVAVGLLYASPNLYGRDPA-------------------------IQVS 38

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
                +  L    D++ + LKK  + V S +    +I + F +   +    D +   L  
Sbjct: 39  GAKGADVDL-SVIDKVNATLKKHNVSVKSTKLEDGQILVRFRNVEEQLKAQDLLRNSLSD 97

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI----------DQVISHAIEQSMEIIR-Q 169
              S +N+ P +   +         +    +              + + +EQ  E  R  
Sbjct: 98  DYISAINMAPAQPAWLKAVGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEEDFRSD 157

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
             ++     S  +  GS R+ +++  E+D     + L T   ++ +    +N    +   
Sbjct: 158 LREEKLRYRSVRRVAGSDRMRVEMRSEEDKDAAERFLKTQYPLNVYIDDSSNDNAFYATM 217

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                    +  + +++  I         A  + +       I     
Sbjct: 218 SEQKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPG 265


>gi|83647161|ref|YP_435596.1| preprotein translocase subunit SecD [Hahella chejuensis KCTC 2396]
 gi|83635204|gb|ABC31171.1| protein-export membrane protein SecD [Hahella chejuensis KCTC 2396]
          Length = 620

 Score =  216 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 155/532 (29%), Positives = 275/532 (51%), Gaps = 33/532 (6%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            +   N  P +    + S +    + LGLDLRGG H ++EVD    V   +++   ++++
Sbjct: 100 YVVALNLAPTTP--AWLSNLGAAPMKLGLDLRGGVHFLMEVDLAKAVATTMEITQGDIKT 157

Query: 80  FLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT 138
            L++EG+   S+      +I++ F D   +++             ++   +    ++   
Sbjct: 158 KLREEGLRYKSVDILTPRQISVGFRDEDDRDSALSLARREFDDFLAESAEESGLFMV--- 214

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
                 + L ++   ++  +AI Q++  +R R++++G++E  +QR G  RI+++LPG QD
Sbjct: 215 -----KLTLLESRAKEIEDYAISQNLSTLRNRVNELGVAEPLVQRQGRGRIVVELPGVQD 269

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
            +  +++LG+TA + F      ++  G +    F   S+     +E  + I+G  +  A 
Sbjct: 270 TAEAKRILGSTANLEFRLEARPDASAGSIEKFEFR--SEPRTASLERDIIITGGSVANAQ 327

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNI--------------------GKPLAVVL 298
            +FD      V        G + F                            G+P     
Sbjct: 328 QSFDENGRPEVNIKLDSLGGNKMFHVTKDAVQRNMGVLFVEYKEEVDAKSTNGQPKKRRY 387

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
             + + +    Q+      +I+G  ++  A  LA +LR+G+L   +  VEER VG  LG 
Sbjct: 388 VEKKIISLATIQSPLGNSFRITGLDSVFEAKELALLLRSGALAAPIYFVEERTVGPSLGL 447

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           ++I  G  ++  G VL++LFMIV Y  +G+VA+ ++  NV + +A++SL+ ATLTLP IA
Sbjct: 448 ENIKDGATSVAIGFVLVMLFMIVYYRVFGIVANIALAANVFILIAVMSLMSATLTLPGIA 507

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GIVL +G+AVD+N+L+ ERIREE R       ++  G+ RA+ +IFD+N+T LIA ++LF
Sbjct: 508 GIVLTVGMAVDANVLIYERIREELRNGLPPQSAIHAGYDRAFVSIFDANVTTLIAALILF 567

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
             G G V+GFA+T+ + IL SMFTAI++ RA++  I   + + S+ I  + +
Sbjct: 568 AIGTGPVKGFAVTLSIGILTSMFTAITVTRAVVNMIYGGRNVGSLSIGGVKQ 619



 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 97/267 (36%), Gaps = 4/267 (1%)

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
           +       +      +    L V     VD        +  +  +    +    ++ L  
Sbjct: 345 LGGNKMFHVTKDAVQRNMGVLFVEYKEEVDAKSTNGQPKKRRYVEKKIISLATIQSPLGN 404

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G           +  +   +           VGP +  E I+ G   V I  + +
Sbjct: 405 SFRITGLDSVFEAKELALLLRSGALAAPIYFVEERTVGPSLGLENIKDGATSVAIGFVLV 464

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++++ + ++  F + A   L  ++   +   +L      L  +A ++  +G +V+  V++
Sbjct: 465 MLFMIVYYRV-FGIVANIALAANVFILIAVMSLMSATLTLPGIAGIVLTVGMAVDANVLI 523

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           Y+R+R+ ++     +  +  I    +         ++   I+ L +   G   +  FA+ 
Sbjct: 524 YERIREELR---NGLPPQSAIHAGYDRAFVSIFDANVTTLIAALILFAIGTGPVKGFAVT 580

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++ GI+ +  ++I +   ++  IY  R
Sbjct: 581 LSIGILTSMFTAITVTRAVVNMIYGGR 607



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  ++  +G + ALPN  P     +                  GS   +EVD
Sbjct: 4   KYPLWKNLLVVIVLMMGFIYALPNLYPDDYALQI----------------SGSRGSIEVD 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    + +  L + GI     +  +  I + FAD+  + +    V   L
Sbjct: 48  ---------ESVLKKAKDALDEAGIAYGEAKVGEKNIIIRFADNDTQLDAQPHVKSAL 96


>gi|57167975|ref|ZP_00367114.1| protein-export membrane protein SecF [Campylobacter coli RM2228]
 gi|305431874|ref|ZP_07401041.1| protein-export membrane protein SecF [Campylobacter coli JV20]
 gi|57020349|gb|EAL57018.1| protein-export membrane protein SecF [Campylobacter coli RM2228]
 gi|304444958|gb|EFM37604.1| protein-export membrane protein SecF [Campylobacter coli JV20]
          Length = 323

 Score =  216 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/285 (35%), Positives = 159/285 (55%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR RF  + +SI+    SI LL+  GL +GIDF GG  + +  +    +  +R  LE
Sbjct: 10  YDFMRMRFAAISLSIVLFFGSIYLLWDRGLQFGIDFSGGTLIQLKYDTAAPIPQIREILE 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                        G K  +        DS+     +      + +      ++  ++VGP
Sbjct: 70  KQGSFQNLSVTEFGSKEEITIRFLGSNDSLGSD--IGEHISTLLKDTGKFEVRRADVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KGI+ +I+S +A+LIYI IRF+W FAL AI + I D+  TLG  +LF I+ N
Sbjct: 128 KVGDELRNKGIMAIIVSLVAILIYIAIRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVLT++GYS+ND ++++DR+R+ +K  +       +I++S++ TL R+V TS   
Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKSELAPIINESVSATLSRTVLTSGLT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +V+ +  +GG +I  F++ +  GIVV   SSIF+A+P LL+  
Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIVVGTLSSIFVASPTLLWFK 291


>gi|296134583|ref|YP_003641825.1| protein-export membrane protein SecD [Thiomonas intermedia K12]
 gi|295794705|gb|ADG29495.1| protein-export membrane protein SecD [Thiomonas intermedia K12]
          Length = 656

 Score =  216 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 182/514 (35%), Positives = 291/514 (56%), Gaps = 21/514 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            +   N L +S    + +A+  N + LGLDLRGG H +L+VD    V+  L   S ELR 
Sbjct: 103 YVVAVNLLSRSP--AWLTALNANPMYLGLDLRGGVHFLLQVDMQAAVHKKLDSISGELRR 160

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+ +      + ++ + +   F D+       + +T      +  L + P+        
Sbjct: 161 DLRDKDARYTKLERVGDTLQGVFVDASALNTAKELITRQ----HPDLQLAPQAP----AG 212

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +S  L+   + Q   +AI+Q+++ +  RI+++G++E  IQ+ G  R++++LPG QD 
Sbjct: 213 PYSLSASLTPAAVSQEEDYAIKQNIQTLHNRINELGVAEPIIQQQGRDRVVVELPGIQDV 272

Query: 200 SRLRQLLGTTAKMSFHKVLP-------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           +R + +LG TA +    V            +     G +   D DG + +V+  V ++G 
Sbjct: 273 ARAKDILGRTASLEVRMVDDSAAAQAALAGQGPLPAGDQIFPDRDGGKLVVKRDVLLTGD 332

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVI 308
           +L  A   FD +T++P V ++ D  G+R F +VTR+N+GK  A++L  R    ++TAPVI
Sbjct: 333 NLTDAQPGFDQQTNEPAVFLTLDSKGSRIFQQVTRENVGKRTAMILFDRGRGEIITAPVI 392

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I  G+ QISG+ T++ A   A +LRAG+L   +NI+EER VG  LG  +I +G  ++
Sbjct: 393 RSEIAGGRVQISGHMTVQEANDTALLLRAGALAAPMNIIEERTVGPSLGQQNISQGFHSV 452

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
             G V IV+FM + Y  +G+V+   + +N++L +A+LS+L ATLTLP IA + L +G+A+
Sbjct: 453 TWGFVAIVIFMSIYYMFFGVVSSIGLAVNLLLLVAVLSMLQATLTLPGIAAMALALGMAI 512

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           DSN+L+NERIREE R   S   ++  G+ RA++TIFDSN+T LIA V L  FG GA+RGF
Sbjct: 513 DSNVLINERIREELRNGASPQNAIFHGYERAWATIFDSNVTTLIAGVALLIFGSGAIRGF 572

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           A+   L IL SMF+A+   R ++      K+   
Sbjct: 573 AVVHVLGILTSMFSAVFFSRGIINLWYGRKRRLH 606



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 88/208 (42%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G    Q      +  +   +     I     VGP + ++ I +G   V    +A++
Sbjct: 401 VQISGHMTVQEANDTALLLRAGALAAPMNIIEERTVGPSLGQQNISQGFHSVTWGFVAIV 460

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++ I + + F + +   L +++   +   ++      L  +AA+   +G +++  V++ 
Sbjct: 461 IFMSIYYMF-FGVVSSIGLAVNLLLLVAVLSMLQATLTLPGIAAMALALGMAIDSNVLIN 519

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      S ++ I             +++   I+ + + ++G   I  FA+  
Sbjct: 520 ERIREELR---NGASPQNAIFHGYERAWATIFDSNVTTLIAGVALLIFGSGAIRGFAVVH 576

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  S++F +  I+   Y  + +
Sbjct: 577 VLGILTSMFSAVFFSRGIINLWYGRKRR 604


>gi|325290225|ref|YP_004266406.1| protein-export membrane protein SecF [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965626|gb|ADY56405.1| protein-export membrane protein SecF [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 330

 Score =  216 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 89/296 (30%), Positives = 146/296 (49%), Gaps = 6/296 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                  ++ R+    +S+L  I  I  LF  GLNYG DF GG  L +   + V  + V 
Sbjct: 36  HRFYFNIVKRRYLWFALSLLMLIPGIISLFVQGLNYGNDFTGGALLDIKFTQAVTQASVT 95

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             LE + +   + Q        ++R  +       +T+  E++        P    +  E
Sbjct: 96  KALEEVGLQGDNVQLSQENTQAIIRTSFLD-----ETKRSELLASIEKNAGPFHKDKIEE 150

Query: 656 IV-GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
              GP +  EL    +  + +SA+ MLIYI  RF++ +A+  I  L+ D+   LG F+LF
Sbjct: 151 SQVGPAMGAELRSGAVKALAVSAVLMLIYIAFRFEFVYAVSGIIALLHDVFMVLGIFSLF 210

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             + +   VAA+LT+  YS+ND +V+YDRMR+N K      SF D++DKS+ +T+ RS+ 
Sbjct: 211 QWQVDAPFVAAILTVFAYSINDTIVIYDRMRENEKRLRKKDSFADMVDKSLWQTMRRSIC 270

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           T     I++L + ++GG     F+  M  G+   A SSIF+ + +++ I       
Sbjct: 271 TVATVLIALLCINIFGGESTKVFSRAMLIGVFCGAYSSIFVCSQLVVEIRARLKDK 326


>gi|153873272|ref|ZP_02001909.1| SecD export membrane protein [Beggiatoa sp. PS]
 gi|152070262|gb|EDN68091.1| SecD export membrane protein [Beggiatoa sp. PS]
          Length = 609

 Score =  216 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 170/520 (32%), Positives = 283/520 (54%), Gaps = 38/520 (7%)

Query: 29  QSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
           Q++    P  +       + LGLDLRGG H +++VD    ++   +   +ELR+ L+++ 
Sbjct: 103 QNLAPATPDWLRTLGGQPMYLGLDLRGGVHFLMQVDMQTAIHQDEETLVNELRTLLRQKK 162

Query: 86  IGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           +   S+ +    +  I  +F     ++    +V      +   L  D  +          
Sbjct: 163 LRYKSVNRVIDGEGGIVATFTALETRDKAKKQVEKQYNDLLITLENDIDE--------YR 214

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +  ++  + +    A+EQ++  +R R++++G+SE  IQR G  RI++QLPG QD +R 
Sbjct: 215 LLMTFTEVALQERRQKALEQNITTLRNRVNELGVSEPVIQRQGDERIVVQLPGVQDTARA 274

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           +++LG TA + F  V  ++S        R  +  DG+   ++  V  +G  +  A A  D
Sbjct: 275 KEILGATATLEFRLVADDDSY------GREYKRRDGSPVRLKRGVIATGDQIVDAAATID 328

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
            ++ +P   +  D  GAR   E TR N+GKP+AVV     +   +++      + +    
Sbjct: 329 QRSGRPAAVVRLDNKGARGMLEATRKNVGKPMAVVFIEYHIETKMVDDKPVVTREKTEEV 388

Query: 323 FTIE------------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
             +                    A  LA +LRAG+L   + I+EER VG  LG +SI  G
Sbjct: 389 INVATIQEEFGKNFQITGLASGEANNLALLLRAGALKAPMEIIEERTVGPSLGQESIDLG 448

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             +I+ G V +++FM++ Y  +G+VA+ ++ +NVI+ +ALLSLL ATLTLP +AGIVL +
Sbjct: 449 MLSIIVGFVAVMVFMLLRYKIFGMVANLALLMNVIILIALLSLLQATLTLPGMAGIVLTL 508

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+ E+IREE     S   S+ +G+ +A+ TIFD+N+T LIA V+LF FG G 
Sbjct: 509 GMAVDANVLIFEKIREEVANGNSPQASIHIGYEKAFITIFDANLTTLIAAVMLFGFGTGP 568

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           ++GFAIT+ L I+ SMFTAI + R+++ F+   KK+  I 
Sbjct: 569 IKGFAITLSLGIVTSMFTAIMVTRSVVNFLYGSKKLTKIS 608



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 101/252 (40%), Gaps = 4/252 (1%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V+       + +  +   +                     +Q     +       + 
Sbjct: 359 PMAVVFIEYHIETKMVDDKPVVTREKTEEVINVATIQEEFGKNFQITGLASGEANNLALL 418

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +   +     I     VGP + +E I  G++ +I+  +A+++++ +R+K  F + A   
Sbjct: 419 LRAGALKAPMEIIEERTVGPSLGQESIDLGMLSIIVGFVAVMVFMLLRYKI-FGMVANLA 477

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L++++   +   +L      L  +A ++  +G +V+  V++++++R+ +       S + 
Sbjct: 478 LLMNVIILIALLSLLQATLTLPGMAGIVLTLGMAVDANVLIFEKIREEVA---NGNSPQA 534

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            I     +        ++   I+ + +  +G   I  FAI ++ GIV +  ++I +   +
Sbjct: 535 SIHIGYEKAFITIFDANLTTLIAAVMLFGFGTGPIKGFAITLSLGIVTSMFTAIMVTRSV 594

Query: 820 LLFIYDWRAKNA 831
           + F+Y  +    
Sbjct: 595 VNFLYGSKKLTK 606


>gi|154174926|ref|YP_001408525.1| preprotein translocase subunit SecF [Campylobacter curvus 525.92]
 gi|112803081|gb|EAU00425.1| protein-export membrane protein SecF [Campylobacter curvus 525.92]
          Length = 323

 Score =  216 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/285 (35%), Positives = 164/285 (57%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR RF  V   ++  + SI LL T GLNYGIDF GG  + +  +    L  +R    
Sbjct: 10  YDFMRFRFISVVFCLILFVGSIFLLATKGLNYGIDFSGGTLIQLKYDTKAPLDKIREAFA 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           S +I   +     G  + +V      G S      + +  K++ +      ++  +IVGP
Sbjct: 70  SNEILKNASVTEFGTTDEVVVRFS--GSSSNLGSDIGVTVKELLKDTGNVEVRRVDIVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ ++IS  A+LIYI  RF+W FAL AI T I DI  T+G  +LF I+ N
Sbjct: 128 KVGDELREKGLMAILISFGAVLIYIAFRFEWRFALAAIATEIHDIIITMGAISLFDIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+LT++GYS+ND ++++DR+R+ +K  +       +I++S++ TL R++ TS   
Sbjct: 188 LDTLAAILTVLGYSLNDTIIIFDRIREGIKS-SKRTDIEGVINESVSATLSRTILTSATT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            ++VL + ++GG +I  F+  +  GIV+   SSI+I++P+L++  
Sbjct: 247 MMTVLVLFLFGGDMIHGFSFVLIVGIVIGTISSIYISSPLLIWFK 291


>gi|329889962|ref|ZP_08268305.1| protein-export membrane protein SecF [Brevundimonas diminuta ATCC
           11568]
 gi|328845263|gb|EGF94827.1| protein-export membrane protein SecF [Brevundimonas diminuta ATCC
           11568]
          Length = 330

 Score =  216 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 173/311 (55%), Gaps = 8/311 (2%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
            +       L+P     QF++       +S + ++ +I   F  GLN GIDF+GG  + V
Sbjct: 2   SMKGWPLIKLLPHKTNFQFVKYAKGFAVLSAILTVAAIIGCFYPGLNLGIDFRGGASMEV 61

Query: 584 LANRPVDLSVVRS-------NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
                  L + +        +L  +Q+  I+ ++ + +      +++Q  D+  QT V++
Sbjct: 62  AKPAGQTLELDKLRGAVSGLDLGDVQVQGIARRDNNLDDGSTAIVRFQVPDNEDQTAVVQ 121

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            V+  I+  V         +VG K+S EL+  G++ ++++ + M +YI  RF W F +GA
Sbjct: 122 KVEGAISAAVGDVAYSGVSVVGSKVSGELLTNGVMALLVAVVLMFLYIAFRFPWQFGIGA 181

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           +  L+ D+  T G      +EF+L  VAA+LT+IGYS+ND VVV+DR+R+N++ Y   + 
Sbjct: 182 VAGLLHDVALTFGLIVALRMEFSLNLVAALLTVIGYSMNDTVVVFDRLRENLRKY-KVMP 240

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            R++ID SINETL R++ T +   I ++ +AV+GG  +  F+I +AFG+V+   SSI++ 
Sbjct: 241 LREVIDLSINETLSRTIITGLTTVIVLIVLAVFGGEALRGFSITLAFGVVIGTFSSIYVG 300

Query: 817 APILLFIYDWR 827
           API+L     R
Sbjct: 301 APIILLWGVDR 311


>gi|225075074|ref|ZP_03718273.1| hypothetical protein NEIFLAOT_00073 [Neisseria flavescens
           NRL30031/H210]
 gi|224953558|gb|EEG34767.1| hypothetical protein NEIFLAOT_00073 [Neisseria flavescens
           NRL30031/H210]
          Length = 617

 Score =  216 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 166/508 (32%), Positives = 274/508 (53%), Gaps = 28/508 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + Y+ ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYAGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++ Q +N +T+   D+   +    ++                    +      I + 
Sbjct: 164 RTGTVHQAENGLTVPLQDAADVQKALPQLQKMFPEA------------TLLADGNNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  I++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAINKVRSDAVKQNINTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPN--------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  +        N      + +           LV  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPIKLQEALNGNVPTGYELLSSGGDRPETILVSKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQVG-APAVSLSLDSAGGSIFGELTSANVGKRMAMVLIDQGKSEVVTAPVIRSAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G   
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  L +LS + ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSTNILFLLGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   +
Sbjct: 511 NERIREELRGGMPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKMKS 522
            IL SM++++ + RA++      ++   
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRKLR 598



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +    A+ 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFNSTLWGFAAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   LG  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSTNILFLLGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRG---GMPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L +    +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIAFTIVVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK+ GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDIIENTL 95


>gi|157376025|ref|YP_001474625.1| preprotein translocase subunit SecD [Shewanella sediminis HAW-EB3]
 gi|157318399|gb|ABV37497.1| protein-export membrane protein SecD [Shewanella sediminis HAW-EB3]
          Length = 616

 Score =  216 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 160/522 (30%), Positives = 268/522 (51%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + V    +    + R+ L+ E I
Sbjct: 104 NLAPATPDWLESLGGSPMKLGLDLRGGVHFLMEVDMGEAVRKMTEAKISDFRTDLRGEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D+         +             D     + +     +   
Sbjct: 164 RYAGIRNSAKGIEIKFRDAENLAKAERFLKTRGN--------DMVFTDISSGDSYFLMAN 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  + Q+   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R + +L
Sbjct: 216 LSEAYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKDIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V           G      +      G Q ++   V ++G H+ GA  +F
Sbjct: 276 GATASIEFHMVDEKADAAAAASGRVSPSSQVYNRRQGGQVVLHKAVMLTGDHIQGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           D  + +P V I+ D  G   F  VT+DNIGKP+A +                  +     
Sbjct: 336 DEYS-RPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGDKNPDGSVKMQKIEEV 394

Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                  A  LA +LRAG+L   + IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLEHSEAQNLALLLRAGALIAPVTIVEERTIGPSLGAENIQNG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+ ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 VQAMIWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFTAI   R+++  +   K++K + I
Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRSIVNAMWGGKRVKKLSI 616



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 91/234 (38%), Gaps = 6/234 (2%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            S+++  I            +   +              +  +   ++   TI     +G
Sbjct: 384 GSVKMQKIEEVISVATIQARLGRNFVITGLEHSEAQNLALLLRAGALIAPVTIVEERTIG 443

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIE 717
           P +  E I+ G+  +I     +LI++ + ++  F L A   L  ++   +G  ++  G  
Sbjct: 444 PSLGAENIQNGVQAMIWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGVMSMIPGAV 502

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +            ++
Sbjct: 503 LTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHEGYGNAFSTIADANI 559

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
             F++ L +   G   +  FA+ +  GI  +  ++I     I+       R K 
Sbjct: 560 TTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAMWGGKRVKK 613


>gi|332704177|ref|ZP_08424265.1| protein-export membrane protein SecD [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554326|gb|EGJ51370.1| protein-export membrane protein SecD [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 532

 Score =  216 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 185/537 (34%), Positives = 295/537 (54%), Gaps = 24/537 (4%)

Query: 1   MRNN-PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+ +  W + L  +   IGL+  +P+    ++     S +P +RISLGLDL+GG HL L+
Sbjct: 1   MKGSLRWRLALSLIAAIIGLVYMMPSI--PAVDRAIGSFLPNDRISLGLDLKGGIHLTLD 58

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLF 118
           V+    +   L     ++R   + + + V   +     K+ L+   S  +E+    +   
Sbjct: 59  VNVRKALENSLSQSGRDIRDLARDKDLAVIKPQVIAGAKLRLALVKSGQQESFESLLKQS 118

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            +G+  +     +   +      E  +  ++   +   +  ++Q+++ IR RIDQ G++E
Sbjct: 119 FEGLRIESKEPGEDGRI------EYVLAPTEEYRNYFTNLTVDQAVKTIRNRIDQFGVAE 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233
             I++    RI +QLPG QDP R   ++G TA + F  V  + S +    GV        
Sbjct: 173 PDIRKQQGGRIQVQLPGLQDPERAIAIIGKTAHLEFKIVDDSMSPQQAASGVLPPGRELA 232

Query: 234 --------RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +     +++    ++G  +  A  +FD    +P V ++F+  GAR F  +
Sbjct: 233 TMRRTSADGGTVETSVVLQRDAVLTGEAITDANVSFDQFG-QPYVGLTFNARGARDFERI 291

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T +N+ K +A+VLDG V + PVI + I  G+A ISG+FT   A  LA +LRAGSLP  + 
Sbjct: 292 TGENVRKQMAIVLDGVVYSTPVIQEKISGGRASISGSFTEAEAHDLAVVLRAGSLPAPVT 351

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R VG  LG +SI +G  A + GLV+++ FM++ YG  G+VAD  +  N++L +A L
Sbjct: 352 VIEQRVVGPSLGQESIDQGLRAGIIGLVVVMAFMVLYYGLAGIVADLVLLFNLVLIMAGL 411

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           +  GATLTLP IAGI+L IG+AVD+N+L+ ERIREE R   +   ++  GFSRA  TI D
Sbjct: 412 AAFGATLTLPGIAGIILTIGMAVDANVLIYERIREELRNGVTPRAAIAEGFSRATLTILD 471

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +N+T +IA V+L+ FG G +RGFA+T+ L IL SMFTAI + R +       +K   
Sbjct: 472 ANVTTVIAAVILYEFGTGPIRGFAVTLILGILSSMFTAIFVSRVIFDLYTSGRKELR 528



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 106/242 (43%), Gaps = 5/242 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             +    VR  +  +  G +       EK    R       + A+   L +V +  +   
Sbjct: 289 ERITGENVRKQMAIVLDGVVYSTPVIQEKISGGRASISGSFTEAEAHDLAVVLRAGSLPA 348

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P++ I+   +VGP + +E I +G+   II  + ++ ++ + +     + A   L+ ++  
Sbjct: 349 PVTVIEQR-VVGPSLGQESIDQGLRAGIIGLVVVMAFMVLYYGL-AGIVADLVLLFNLVL 406

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +   A FG    L  +A ++  IG +V+  V++Y+R+R+ ++     ++ R  I +  +
Sbjct: 407 IMAGLAAFGATLTLPGIAGIILTIGMAVDANVLIYERIREELR---NGVTPRAAIAEGFS 463

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                 +  ++   I+ + +  +G   I  FA+ +  GI+ +  ++IF++  I       
Sbjct: 464 RATLTILDANVTTVIAAVILYEFGTGPIRGFAVTLILGILSSMFTAIFVSRVIFDLYTSG 523

Query: 827 RA 828
           R 
Sbjct: 524 RK 525


>gi|225873734|ref|YP_002755193.1| protein-export membrane protein SecF [Acidobacterium capsulatum
           ATCC 51196]
 gi|225793946|gb|ACO34036.1| protein-export membrane protein SecF [Acidobacterium capsulatum
           ATCC 51196]
          Length = 401

 Score =  216 bits (548), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 71/185 (38%), Positives = 118/185 (63%), Gaps = 1/185 (0%)

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               ++N EIVGP++  +L  + ++ V+ S   MLIY+W RF+  + + A+  +  D   
Sbjct: 205 SGFAVRNVEIVGPQVGAQLRHQALMAVLYSLAGMLIYLWFRFELIYGVAAVVAVFHDTII 264

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+G F+L  +E +LT +AA+LTLIGYS+ND +VV+DR+R+N++  +      D++++SIN
Sbjct: 265 TIGAFSLRDMEMSLTVIAAILTLIGYSMNDTIVVFDRIRENLR-MSRREPLADVVNRSIN 323

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +TL R+V TS   F++ L +  +GG V+  F+  +  GI +   SSI +AAP+L+   +W
Sbjct: 324 QTLSRTVLTSGLTFLTALSLFFFGGEVLHPFSFALVVGIAIGTYSSIAVAAPMLVAYQNW 383

Query: 827 RAKNA 831
           RAK  
Sbjct: 384 RAKRG 388


>gi|319637695|ref|ZP_07992461.1| protein-export membrane protein SecD [Neisseria mucosa C102]
 gi|317400850|gb|EFV81505.1| protein-export membrane protein SecD [Neisseria mucosa C102]
          Length = 617

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 166/506 (32%), Positives = 275/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++ Q +N +T+   D+   +    ++          L                I + 
Sbjct: 164 RTGTVHQTENGLTVPLQDAADVQKALPQLQKLFPEAT-LLPDG-----------NNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  I++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAINKVRSDAVKQNINTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPN--------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  +        N      + +           LV  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPIKLQEALNGNVPTGYELLSSGGDHPETILVNKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTSANVGKRMAMVLIDQGKSEVVTAPVIRAAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G   
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM++ Y   G  +  ++  N++  + +LS + ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VAAFMVIYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R   +   ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   +
Sbjct: 511 NERIREELRAGVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 83/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +    A+ 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ I ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVIYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     ++ +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVAPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 37/118 (31%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L +    +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIAFTIVVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         ++ + LK+ GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------DQTQSKVDAALKQAGIQTDGMFIVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|152996657|ref|YP_001341492.1| protein-export membrane protein SecF [Marinomonas sp. MWYL1]
 gi|150837581|gb|ABR71557.1| protein-export membrane protein SecF [Marinomonas sp. MWYL1]
          Length = 304

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 95/294 (32%), Positives = 163/294 (55%), Gaps = 5/294 (1%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I FM  R      S+   + S+  L T GL +G+DF GG  + V       L  V
Sbjct: 1   MKVTNIPFMAMRKIVAVFSLTLILISLVSLATKGLQFGLDFTGGTLIEVAYKEAPQLDDV 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L      D+  QNF    + +VR+      ++      E++           ++Q +
Sbjct: 61  RTLLGENGYSDVVVQNFGSPTDVVVRMANSYTATLGD----EVLATLQNHGATDVSLQRS 116

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E VG ++  EL  +G +G++++   ++IY+ +RF++ F++ ++  LI D+  TLGFF++F
Sbjct: 117 EFVGAQVGEELREQGGLGMLLALAIVMIYVAVRFQFKFSVASVAALIHDVIITLGFFSIF 176

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            +EF+LT +AA+L ++GYS+ND +VV DR+R+N ++     +  DL++ SIN+TLGR++ 
Sbjct: 177 EVEFDLTVLAALLAVVGYSLNDTIVVCDRIRENFRIM-RDTTPYDLVNDSINQTLGRTLI 235

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           TS+     ++ +   GG  I +FA+ +  GIV+   SSIF+AA +LL +   R 
Sbjct: 236 TSLTTLFVLVVLFFSGGEAIHNFAMALLVGIVIGTYSSIFVAANLLLAMGVKRE 289


>gi|206578988|ref|YP_002240125.1| protein-export membrane protein SecD [Klebsiella pneumoniae 342]
 gi|290510070|ref|ZP_06549440.1| preprotein translocase SecD subunit [Klebsiella sp. 1_1_55]
 gi|206568046|gb|ACI09822.1| protein-export membrane protein SecD [Klebsiella pneumoniae 342]
 gi|289776786|gb|EFD84784.1| preprotein translocase SecD subunit [Klebsiella sp. 1_1_55]
          Length = 615

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 172/539 (31%), Positives = 298/539 (55%), Gaps = 40/539 (7%)

Query: 13  MICCIG-LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
           ++  +G   +   N  P +    + +A+    + LGLDLRGG H ++EVD D  +    +
Sbjct: 91  LLTVLGDKYVVALNLAPATPR--WLAALYAEPMKLGLDLRGGVHFLMEVDMDTALGKLQE 148

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
              D LRS L+ +GI   ++R+  N  +++ F DS  ++              S L+   
Sbjct: 149 QNIDSLRSELRDKGIPYATVRKEDNYGLSIVFRDSAARDQAI-----------SYLSPRH 197

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           +  ++ +  +  +  V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+
Sbjct: 198 RDLVISSQGDNSLKAVMTDERLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIV 257

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVED 245
           ++LPG QD +R +++LG TA + F  V  N  +     G            +G   ++  
Sbjct: 258 VELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDSEVKETREGQPVVLYK 317

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV--- 302
           +V ++G H+  +T++   + ++P V+IS D  G       T+DNIGKP+A +        
Sbjct: 318 RVILTGDHITDSTSS-MDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSG 376

Query: 303 ---------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                          +      Q+      +I+G      A  L+ +LRAG+L   + IV
Sbjct: 377 KKDANGRAILAKEEEVINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIV 436

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER +G  LG  +I +G  A +AGLV+ +LFMI+ Y K+GL+A  ++  N++L + ++SL
Sbjct: 437 EERTIGPTLGMQNIKQGLEACLAGLVVSILFMILFYKKFGLIATSALIANLVLIVGIMSL 496

Query: 408 LG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           +  ATLT+P IAGIVL + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+
Sbjct: 497 IPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDA 556

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T LI  ++L+  G GA++GFAIT G+ I  SMFTAI   RA++  +   K++K + I
Sbjct: 557 NVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++ + +K  F L A + LI ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMILFYK-KFGLIATSALIANLVLIVGIMSLIP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    GI  +  ++I     I+  +Y  +    
Sbjct: 556 ANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKK 612


>gi|326387925|ref|ZP_08209531.1| protein translocase subunit secF [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326207971|gb|EGD58782.1| protein translocase subunit secF [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 322

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 170/302 (56%), Gaps = 6/302 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD   I F++ R     +S++    S  L+ T GLN G+DF GG  + V   R
Sbjct: 1   MKLLKLVPDHTNIHFLKWRVPFYLVSMVLVAASWGLVLTKGLNLGVDFIGGQMIRVTFER 60

Query: 588 PVD--LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG---DSVAQTRVLEMVKKKI 642
             +  +  +R  +  L  G+   Q F       +R++   G   D     R+   +   I
Sbjct: 61  SAEAPVGPLRDEVTKLGYGEPILQRFGKPNEVSIRMKLPEGAEHDPALADRMARTITADI 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            +    + +   + V  K+S+EL       +  +A+A+  YIW+RF+W F +GA+ +L+ 
Sbjct: 121 RKNHADARVDGVDSVSGKVSKELGWDAFRALGFAALAVAAYIWVRFEWQFGIGALLSLVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D++ TLG FA+  +EF+L  VAA+LTLIGYS+ND +VVYDR+R+N+K Y   +   +L+D
Sbjct: 181 DVSLTLGMFAVTQLEFDLNIVAALLTLIGYSLNDTIVVYDRIRENLKKY-RRMPLPELLD 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            S+NETL R++ TS++  I+++ + V+G  VI  F   +  GI +   SSI++AAPIL++
Sbjct: 240 LSVNETLARTIVTSLSMLITLVSLLVFGPQVIFGFTAAITLGIFIGTYSSIYMAAPILIW 299

Query: 823 IY 824
           + 
Sbjct: 300 LK 301


>gi|83858675|ref|ZP_00952197.1| SecD/SecF/SecDF export membrane protein [Oceanicaulis alexandrii
           HTCC2633]
 gi|83853498|gb|EAP91350.1| SecD/SecF/SecDF export membrane protein [Oceanicaulis alexandrii
           HTCC2633]
          Length = 544

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 191/540 (35%), Positives = 306/540 (56%), Gaps = 20/540 (3%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSM-------LDRFPSAMPKNRISLGLDLRGGSHLV 57
           PW   + +++  IGLL  LPNF+P+++            + +P   I+LGLDLRGGSHLV
Sbjct: 6   PWKTTVVTLVILIGLLFTLPNFVPENVRLDANGEPKGVFTVLPHQTINLGLDLRGGSHLV 65

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKV 115
            +VD D+     L+   D+ RS L+++   +   S   ++ ++ +  +     +   +++
Sbjct: 66  FQVDMDEVRQERLENLQDDARSALRQDPPILLSGSPAVVEGQVLVRLSRPEDMDRAMERL 125

Query: 116 TLFLQGVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
               + + +            +     ++ I + +++  +D +    + QS+E+IR+R+D
Sbjct: 126 EELSEPITTATGAQGLNQTLAITRGDDDRTIRMAITEAALDSIRQRTVTQSIEVIRRRVD 185

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG--- 229
             G +E  I R G  R+L+Q+PGE DP R+  ++GTTA+++FH V    +      G   
Sbjct: 186 STGTTEPNIARQGEDRVLVQVPGENDPQRIIDIVGTTARLTFHMVEEGVTINPDGTGRTP 245

Query: 230 ----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
               +     S      V+ +  ++G  L  A   FD    +P V+  F+  GAR F + 
Sbjct: 246 PGVMILPSERSSEPFLAVQRRPLVTGEQLVNAGQAFDQNG-QPAVNFRFNTTGARAFADA 304

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N G+  A+VLD  +++APVI   I  G   I G FT+++A  LA ML AG+LP +L 
Sbjct: 305 TTQNRGRRFAIVLDDTIISAPVIRNPITGGSGIIEGGFTMQSATDLANMLNAGALPARLT 364

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            VE+R V A LG+DS+ +G  A++ G  L+++FM + YG +G+V+  ++  N++L L  L
Sbjct: 365 PVEQRTVTASLGADSVARGETAVLIGFGLVIVFMALAYGFFGIVSTLALLANILLLLGAL 424

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           S L ATLTLP IAGIVL IG+AVD+N+L+ ER+REE R  ++V  + + G+SRA S I D
Sbjct: 425 SGLQATLTLPGIAGIVLTIGMAVDANVLIFERVREEYRLGRTVTTAFEAGYSRALSAILD 484

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +NIT LIA  VL+  G G VRGFA+T+GL IL S+FTA    R ++   +R  + K++ +
Sbjct: 485 ANITTLIAAAVLYMLGAGPVRGFAVTLGLGILTSVFTAFVFSRLLISIWLRTSRPKTLAM 544



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 81/175 (46%), Gaps = 5/175 (2%)

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             +  + + +G   V+I    +++++ + + + F + +   L+ +I   LG  +      
Sbjct: 373 ASLGADSVARGETAVLIGFGLVIVFMALAYGF-FGIVSTLALLANILLLLGALSGLQATL 431

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            L  +A ++  IG +V+  V++++R+R+  +L     +     +   +  L   +  ++ 
Sbjct: 432 TLPGIAGIVLTIGMAVDANVLIFERVREEYRL---GRTVTTAFEAGYSRALSAILDANIT 488

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             I+   + + G   +  FA+ +  GI+ +  ++ F+ + +L+ I+   ++   +
Sbjct: 489 TLIAAAVLYMLGAGPVRGFAVTLGLGILTSVFTA-FVFSRLLISIWLRTSRPKTL 542


>gi|212709162|ref|ZP_03317290.1| hypothetical protein PROVALCAL_00195 [Providencia alcalifaciens DSM
           30120]
 gi|212688074|gb|EEB47602.1| hypothetical protein PROVALCAL_00195 [Providencia alcalifaciens DSM
           30120]
          Length = 604

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 161/518 (31%), Positives = 276/518 (53%), Gaps = 37/518 (7%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
            ++  A+    + LGLDLRGG H ++EVD D  +    +   D LR+ L++ GI   S+R
Sbjct: 99  PKWLEALGGEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNMDGLRNDLRQAGIAYSSIR 158

Query: 93  QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +  +  + + F ++  +      +                  +    ++  +  V++   
Sbjct: 159 KGSDYSVEVRFRNADDRSLAEKTLARKY-----------PDLVFSDGSDNTMIAVMTDER 207

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + +  ++A+ Q++ IIR R++Q+G++E  +QR G+ RI+++LPG QD +R +++LG TA 
Sbjct: 208 LREARNYAVSQNITIIRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATAT 267

Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  +        G          D +G  Y++  +V ++G H+  +T+  D   +
Sbjct: 268 LEFRLVNTSVDSSAAESGRIPGDSELKSDRNGVPYVLYKRVVLTGDHITDSTSETDENGY 327

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------------VLTAPVI 308
              V IS D  G     + TRDN  K +A +                       +     
Sbjct: 328 PQ-VSISLDSAGGSIMSDFTRDNQDKLMATLFVEYKDSGKKDAAGRAILVKDEKVINAAR 386

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            QA    K +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I +G  A 
Sbjct: 387 IQARFGSKFRITGIDNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLKAC 446

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           +AGL+  +LFMI+ Y K+GL+A  ++  N+++ + ++SLL  ATLT+P IAGIVL + +A
Sbjct: 447 IAGLLASILFMIIYYRKFGLIASSALMANLVMIVGIMSLLPGATLTMPGIAGIVLTLAVA 506

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  ++L+  G G+++G
Sbjct: 507 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSITDANLTTLITAIILYAVGTGSIKG 566

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 567 FAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 85/205 (41%), Gaps = 5/205 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A       +  +   ++    I     +GP +  + I +G+   I   +A ++++ I 
Sbjct: 401 DNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLKACIAGLLASILFMIIY 460

Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           ++  F L A + L+ ++   +G  +L  G    +  +A ++  +  +V+  V++ +R+++
Sbjct: 461 YR-KFGLIASSALMANLVMIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE 519

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++      S +  I +            ++   I+ + +   G   I  FAI  A G+ 
Sbjct: 520 ELR---NGRSVQQAIHEGYKGAFSSITDANLTTLITAIILYAVGTGSIKGFAITTAIGVA 576

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
            +  ++I     I+  +Y  +  N 
Sbjct: 577 TSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|332531794|ref|ZP_08407679.1| protein-export membrane protein SecF [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038770|gb|EGI75212.1| protein-export membrane protein SecF [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 315

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 96/291 (32%), Positives = 162/291 (55%), Gaps = 2/291 (0%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             ++FM  R   +G S L  + S   +F  GLN+G+DF GG  + V  ++P DL  VR  
Sbjct: 9   RTLRFMSLRKVAMGFSTLLILASFASIFIKGLNFGLDFTGGTAVEVGFSQPADLKKVRDA 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L      D S Q F   +  LVRL  +  D  A+  +   V   + +      ++  E V
Sbjct: 69  LADNGFADASVQLFGSSQEILVRLAPRGSDVKAEV-IGNQVIDALKKADDSVVMRRIEFV 127

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  +L  +G + ++ + I +LIY+  RF+W FA+GA+  L+ D+  T+G F++ G+E
Sbjct: 128 GPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVGALLHDVIITVGLFSVLGLE 187

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AA+L +IGYS+ND +VV DR+R+N +         ++ID S+ +TL R++ TS+
Sbjct: 188 FDLTILAAILAVIGYSLNDTIVVSDRIRENFRK-VRIDDTIEIIDISLTQTLNRTLVTSI 246

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + ++ +  WGG  I  FA  + FG+ +   SSI++A+ + + +   + 
Sbjct: 247 TTILVLIALFAWGGQTIHGFATALLFGVFIGTYSSIYVASSVAIAMGVSKE 297


>gi|261377973|ref|ZP_05982546.1| protein-export membrane protein SecD [Neisseria cinerea ATCC 14685]
 gi|269145837|gb|EEZ72255.1| protein-export membrane protein SecD [Neisseria cinerea ATCC 14685]
          Length = 617

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 164/506 (32%), Positives = 274/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQTENSLTVPLQDAGDVQKALPQLRKLFPEA------------TLNSEGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR--------DSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  +  K                          L+  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPVKLREASEGNVPAGYELLSSGGDHPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRAAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G   
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM++ Y   G  +  ++  N++  + +LS + ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VAAFMVIYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   +
Sbjct: 511 NERIREELRAGVVPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +    A+ 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ I ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVIYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVVPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L +    I  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIAFTIVIAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         ++ + LK+ GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------DQTQSKVDAALKQAGIQTDGMFVVDNSLKVRFKDTETQLKARDIIENTL 95


>gi|254469323|ref|ZP_05082728.1| protein-export membrane protein SecF [Pseudovibrio sp. JE062]
 gi|211961158|gb|EEA96353.1| protein-export membrane protein SecF [Pseudovibrio sp. JE062]
          Length = 313

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 181/300 (60%), Gaps = 5/300 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+P+    +FM  R      S + ++ SI L  T GLNYGIDFKGG  + + +  
Sbjct: 1   MKLLRLVPEQTNFRFMHWRVLSFPFSGITAVLSIVLFLTVGLNYGIDFKGGTLIELQSTN 60

Query: 588 -PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            P +LS +R  L  L +GD+  Q F      L+R++ Q     AQ  V+E V+   T+  
Sbjct: 61  GPANLSEIRRTLGGLNLGDVQVQEFGSPTEVLIRIESQGEGESAQQDVVENVRSAFTDGY 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                + TE+VGP++S EL   G + V  + + ++ YIW RF+W FA+GAI T   DI  
Sbjct: 121 EF---RRTEVVGPRVSGELAYAGTLAVGSALLMIMFYIWFRFEWQFAVGAIITTFNDILL 177

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+G FA+  ++F L+++AAVLT+IGYS+ND VVVYDR+R+N++ Y   +S  +L+DKSIN
Sbjct: 178 TVGLFAILQLDFTLSSIAAVLTIIGYSLNDTVVVYDRIRENLRRY-KRLSLEELLDKSIN 236

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ETL R+  TS+   +++  +   GG VI SF + M FGIV+   SSIF+A+P+L+ +   
Sbjct: 237 ETLSRTTMTSVTTLLALFALYFLGGEVIQSFVLAMIFGIVIGTYSSIFLASPLLMLMKLR 296


>gi|238893344|ref|YP_002918078.1| preprotein translocase subunit SecD [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238545660|dbj|BAH62011.1| preprotein translocase SecD subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 615

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 170/524 (32%), Positives = 291/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+ +GI
Sbjct: 104 NLAPATPRWLAALYAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSELRDKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  +++ F DS  ++              S L+   +  ++ +  +  +  
Sbjct: 164 PYATVRKEDNYGLSIVFRDSAARDQAI-----------SYLSPRHRDLVISSQGDNRLKA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMTDERLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -MDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILAKEEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI+ Y K+GL+A  ++  N+IL + ++SL+  ATLT+P IAGIV
Sbjct: 452 QGLEACLAGLVVSILFMILFYKKFGLIATSALIANLILIVGIMSLIPGATLTMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+N+T LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ I  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++ + +K  F L A + LI ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMILFYK-KFGLIATSALIANLILIVGIMSLIP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    GI  +  ++I     I+  +Y  +    
Sbjct: 556 ANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKK 612


>gi|261379739|ref|ZP_05984312.1| protein-export membrane protein SecD [Neisseria subflava NJ9703]
 gi|284797415|gb|EFC52762.1| protein-export membrane protein SecD [Neisseria subflava NJ9703]
          Length = 617

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 166/506 (32%), Positives = 274/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++ Q +N +T+   D+   +    ++          L                I + 
Sbjct: 164 RTGTVHQTENGLTVPLQDAADVQKALPQLQKLFPEAT-LLPDG-----------NNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  I++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAINKVRSDAVKQNINTLHNRVNELGVAEPVIQQSGLDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPN--------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  +        N      + +           LV  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPIKLQEALNGNVPTGYELLSSGGDHPETILVNKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTSANVGKRMAMVLIDQGKSEVVTAPVIRAAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G   
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM++ Y   G  +  ++  N++  + +LS + ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VAAFMVIYYRLMGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   +
Sbjct: 511 NERIREELRAGVVPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCI 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +    A+ 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ I ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVIYYRL-MGFFSTIALSTNILFLVGILSAMQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVVPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CIGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L +    +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIAFTIVVAAVYSLPNLFGETPAVQVSTNRQAIVIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK+ GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALKQAGIQTDGMFIVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|221133852|ref|ZP_03560157.1| preprotein translocase subunit SecD [Glaciecola sp. HTCC2999]
          Length = 614

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 163/530 (30%), Positives = 289/530 (54%), Gaps = 38/530 (7%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N  P +   ++ +A+  + + LGLDLRGG H ++EVD +  +    +    + R+
Sbjct: 99  YFVAMNLAPDTP--QWLAALGGSPMKLGLDLRGGVHFLMEVDMNSAIGKATEDMVGDFRT 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++E I   S++Q+ + + + F D    ++    +                  +     
Sbjct: 157 ALREENIRYRSVKQVGDAVNIQFRDQDTLDSARFFLRNR-----------NPDLVFTERD 205

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              I    S+N + Q+  +A++Q++ IIR R++Q+G++E  +Q+ G+ RI++QLPG QD 
Sbjct: 206 GLIIRATFSENRLVQIRDYAVKQNITIIRNRVNQLGVAEPLVQKQGAERIVVQLPGIQDT 265

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHL 254
           ++ +++L  TA + F  V  +N  +  + G        + D  G   L++ +V ++G H+
Sbjct: 266 AKAKEILNATATLEFRMVDQDNDVRDAVNGRIPPSSILVNDRSGIPQLLKKRVMLTGNHI 325

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------ 302
                +   +   P V+IS D  G  +  + T+DNIG P+A V                 
Sbjct: 326 ID-ANSGADEYGIPQVNISLDSKGGTKMSQGTKDNIGNPMATVFIEYKATGERDSNDKLI 384

Query: 303 ------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +    QA      +I+G  + + A  LA +LRAG+L   + IVEER VG  L
Sbjct: 385 FEKKEEVISIATIQARLGSNFRITGLDSPKEARDLALLLRAGALIAPITIVEERTVGPSL 444

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLP 415
           G+++I  G  AI  GL+L+++FM++ Y  +G+VA+ ++  N+++ + ++S++  ATLTLP
Sbjct: 445 GAENIELGMKAIQGGLILVLIFMLIYYKAFGMVANIALIANLVMIVGVMSMIPGATLTLP 504

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            +AGIVL +G+AVD+N+L+ ERIREE R  +S   ++  G+  A+STI D+NIT  +A +
Sbjct: 505 GMAGIVLTVGMAVDANVLIFERIREELRDGRSPQQAIHHGYDSAFSTILDANITTFLAGL 564

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +LF  G G ++GF+IT+ + I  SMFTAI + R ++  I   ++++S+ I
Sbjct: 565 ILFAVGTGPIKGFSITLMIGIATSMFTAIVLTRVLVNLIWGGRRLESLSI 614



 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 101/261 (38%), Gaps = 6/261 (2%)

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           ++ G     G  +  +           SN + +        +    +  L       G  
Sbjct: 352 MSQGTKDNIGNPMATVFIEYKATGERDSNDKLIFEKKEEVISIATIQARLGSNFRITGLD 411

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   ++   TI     VGP +  E I  G+  +    I +LI++ I +
Sbjct: 412 SPKEARDLALLLRAGALIAPITIVEERTVGPSLGAENIELGMKAIQGGLILVLIFMLIYY 471

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           K  F + A   LI ++   +G  ++  G    L  +A ++  +G +V+  V++++R+R+ 
Sbjct: 472 K-AFGMVANIALIANLVMIVGVMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERIREE 530

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++      S +  I    +      +  ++  F++ L +   G   I  F+I +  GI  
Sbjct: 531 LRD---GRSPQQAIHHGYDSAFSTILDANITTFLAGLILFAVGTGPIKGFSITLMIGIAT 587

Query: 808 AASSSIFIAAPIL-LFIYDWR 827
           +  ++I +   ++ L     R
Sbjct: 588 SMFTAIVLTRVLVNLIWGGRR 608


>gi|89902625|ref|YP_525096.1| preprotein translocase subunit SecD [Rhodoferax ferrireducens T118]
 gi|89347362|gb|ABD71565.1| protein-export membrane protein SecD [Rhodoferax ferrireducens
           T118]
          Length = 626

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 164/514 (31%), Positives = 278/514 (54%), Gaps = 21/514 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L +S    + +A+    + LGLDLRGG H +L+VD    +    +  + ++R+
Sbjct: 104 YIVALNLLSRSPT--WLTALRAFPMYLGLDLRGGVHFMLQVDMQAALTKKAESLTGDIRT 161

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+++ +    + +    I + F D++  E   + +             D +    +  T
Sbjct: 162 SLREKNVRHSGINRNGQTIEVRFRDAQTLEAAKEILLDQF--------ADLQSVDALDGT 213

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           + +++  +      +V + A++Q++  +  RI+++G+SE  IQ+ G  RI+++LPG QD 
Sbjct: 214 DYKLTASIKPVAALRVQTQALKQNITTLHNRINELGVSEPVIQQQGLDRIVVELPGVQDT 273

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD-------GNQYLVEDKVEISGI 252
           ++ + +LG TA +    V  ++  +    G   +           G   +V+ +V ++G 
Sbjct: 274 AKAKDILGRTATLEVRMVDESSEARAAEGGTAAVPFGSERFLERSGQPVIVKKQVILTGE 333

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308
           +L  A   FD +T + VV+++ D  GAR F +VTR+++GK +         G V+TAPVI
Sbjct: 334 NLTDAQPGFDSQTQEAVVNLTLDAKGARIFRDVTRESVGKRMAILLFEKGKGEVVTAPVI 393

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I  G+ QISG  T   A   A +LRAGSL   + I+EE  +G  LG+++I KG  ++
Sbjct: 394 RSEIGGGRVQISGRMTAMEATDTALLLRAGSLAAPMEIIEETTIGPSLGAENIAKGFNSV 453

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
             G   + +FM V Y  +GL +  S+ +N++L +A+LS+L ATLTLP +A + L IG+A+
Sbjct: 454 TYGFAAVTVFMCVYYVLFGLFSSISLAVNLLLLVAVLSMLQATLTLPGMAAMALVIGMAI 513

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D+N+L+NER+REE R   S   ++  G+ RA++TI DSN+T LI  + L  FG G VRGF
Sbjct: 514 DANVLINERVREELRNGASAQAAIHAGYDRAWATILDSNVTTLIVGLALLTFGSGPVRGF 573

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           A+   L IL SMF+ +   R ++      +    
Sbjct: 574 AVVHVLGILTSMFSGVFFSRGLVNLWYGRQNKLK 607



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G   A       +  +   +     I     +GP +  E I KG   V     A+ 
Sbjct: 402 VQISGRMTAMEATDTALLLRAGSLAAPMEIIEETTIGPSLGAENIAKGFNSVTYGFAAVT 461

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + +   F L +  +L +++   +   ++      L  +AA+  +IG +++  V++ 
Sbjct: 462 VFMCVYY-VLFGLFSSISLAVNLLLLVAVLSMLQATLTLPGMAAMALVIGMAIDANVLIN 520

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      S +  I    +      + +++   I  L +  +G   +  FA+  
Sbjct: 521 ERVREELR---NGASAQAAIHAGYDRAWATILDSNVTTLIVGLALLTFGSGPVRGFAVVH 577

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S +F +  ++   Y  + K   +
Sbjct: 578 VLGILTSMFSGVFFSRGLVNLWYGRQNKLKTV 609



 Score = 42.0 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 35/118 (29%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   +G++  LPNF  ++   +                   S + + V 
Sbjct: 3   RYPVWKYVIILIALVVGVVYTLPNFFGEAPAVQV------------------SAVKVGVK 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D      ++             G+    +    N +   F ++  +    D +   L
Sbjct: 45  VDSSTKVQVEAVLQTA-------GLAADVVTLDGNSVKARFGNTETQLKAKDAIQKAL 95


>gi|310658613|ref|YP_003936334.1| secyeg protein translocase auxillary subunit [Clostridium
           sticklandii DSM 519]
 gi|308825391|emb|CBH21429.1| SecYEG protein translocase auxillary subunit [Clostridium
           sticklandii]
          Length = 287

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 84/288 (29%), Positives = 157/288 (54%), Gaps = 4/288 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           +  ++ +     +S++  I  + L    G N GIDF GG  + +     V+ + +R  + 
Sbjct: 1   MNIIKNKKIWFSLSLIVIIVGMLLGMIRGYNLGIDFTGGTLIEIQMKDYVESTEIRE-IT 59

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                + +  +    K+ +     +  ++ A+  + ++ K+K +  +  +    +E  GP
Sbjct: 60  DEIDKNATINHIGETKDIIQIRTTENLNNEARMELFKLFKEKYS--LEENQPLRSEQFGP 117

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I +E+  K ++ VII+ I MLIYI  RF+  + L AI  L+ D+   L  +A+F I  N
Sbjct: 118 AIGKEIQNKAMLSVIIATIGMLIYITFRFQLSYGLSAILALVHDVLFVLSVYAIFRIPLN 177

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
              VAA+LT++GYS+ND +VV+DR+R+NM  +    ++ ++ + SI +T+ RS+ TS+  
Sbjct: 178 SPFVAAMLTVVGYSINDTIVVFDRIRENM-KHAKKNAYEEVAELSIRQTVSRSINTSLTT 236

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++++ + V+G   I  F +P+  GI++   SSIFIA+PI + I   +
Sbjct: 237 LLAIVALYVFGVESIREFTLPLLTGIMIGTYSSIFIASPIWVLIKSKK 284


>gi|238787976|ref|ZP_04631772.1| Protein-export membrane protein secD [Yersinia frederiksenii ATCC
           33641]
 gi|238723924|gb|EEQ15568.1| Protein-export membrane protein secD [Yersinia frederiksenii ATCC
           33641]
          Length = 600

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 160/537 (29%), Positives = 290/537 (54%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P++L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 85  VIALNLAPATPSWLARLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 135

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LR+ L+++ I   ++R++ N  + + F D + +++    ++   +            
Sbjct: 136 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKTRDDAVSYLSSRHR-----------D 184

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ +     +  V+S + + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 185 LVIGSNGSNSLKAVMSDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 244

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 245 LPGIQDTARAKEILGATATLEFRLVNSNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 304

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 305 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSLMSNFTKDNIGKPMATLFVEYKDSGKK 363

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 364 DANGRAILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 423

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM++ Y K+G++A  ++  N++L + ++SLL 
Sbjct: 424 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVIYYRKFGVIASTALLANLVLIVGVMSLLP 483

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE +  +++  ++  G+  A+S+I D+N+
Sbjct: 484 GATLTMPGIAGIVLTLAIAVDANVLINERIKEEYKNGRTIQQAIHEGYKGAFSSIVDANV 543

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 544 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 600



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ I ++  F + A T L+ ++   +G  +L  
Sbjct: 425 TIGPTLGSQNIAQGLEACLWGLAVSILFMVIYYR-KFGVIASTALLANLVLIVGVMSLLP 483

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 484 GATLTMPGIAGIVLTLAIAVDANVLINERIKEE---YKNGRTIQQAIHEGYKGAFSSIVD 540

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 541 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 597


>gi|237730383|ref|ZP_04560864.1| preprotein translocase subunit SecD [Citrobacter sp. 30_2]
 gi|5834382|gb|AAD53945.1| general protein secretion pathway subunit SecD [Citrobacter
           freundii]
 gi|226905922|gb|EEH91840.1| preprotein translocase subunit SecD [Citrobacter sp. 30_2]
          Length = 615

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 168/524 (32%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  ++   +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS  ++     ++   Q             ++ +     +  
Sbjct: 164 PYTTVRKEDNYGLSITFRDSSARDEAISYLSKRHQ-----------DLVISSQGSNALRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQSREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALIANLVLIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    +SV  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRSVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + LI ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALIANLVLIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   S +  I++           
Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAINEGYAGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612


>gi|88858509|ref|ZP_01133151.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Pseudoalteromonas tunicata D2]
 gi|88820126|gb|EAR29939.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Pseudoalteromonas tunicata D2]
          Length = 608

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 274/523 (52%), Gaps = 40/523 (7%)

Query: 33  DRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
              P  +     + + LGLDL GG H  +EVD    +   L+    + RS L+++ I   
Sbjct: 96  PSTPQWLKSLGGSPMKLGLDLSGGVHFTMEVDMKTAIENSLEQMDQDFRSDLREQKIRYK 155

Query: 90  SMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
           ++R+    ++I +   D   K+     +    + +           +   + E  +   +
Sbjct: 156 TVRRVAGADEIQILLRDQETKDQAERFLKDRYRDLL---------FVDDRSNEFGLVASM 206

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           ++  +     +AI+Q+  IIR R++QIG++E  +QR G+ RI++QLPG QD +R +++LG
Sbjct: 207 TEQKLKATRDYAIKQNETIIRNRVNQIGVAEPNVQRQGAERIIVQLPGIQDTARAKEILG 266

Query: 208 TTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            TA + F +V  +   +         G   +    G   L++  + ++G H+ G   + +
Sbjct: 267 ATATLEFREVDESADVRDAVAGRVPPGSEIIMARQGYPVLLKKNLILAGSHITG-AQSGN 325

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV--------------- 307
            +  +P V+IS D  G  +    T++ IGK +A V      +  V               
Sbjct: 326 DEYQRPQVNISLDSKGGSKMAAYTKNAIGKRMATVFTEYKPSGKVDENGKALPPIKVEEV 385

Query: 308 ----INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 QA      +I+G      A  L+ +LRAG+L   + IVEER VG  LG+++I K
Sbjct: 386 INVATIQARLGRSFRITGIDNPAEAHNLSMLLRAGALVAPIQIVEERTVGPSLGAENIEK 445

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A+  G + +++ M++ Y  +GLVA+ ++  N++L + ++SL+  A LTLP IAGIVL
Sbjct: 446 GFTAVALGFIFVLVLMLLYYKAFGLVANLALAANLVLIVGVMSLIPDAALTLPGIAGIVL 505

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE    +S   ++  G+  A+STIFD+NIT LIA V+LF  G 
Sbjct: 506 TVGMAVDANVLIFERIREELEDGRSPQQAIHHGYDSAFSTIFDANITTLIAAVILFAVGT 565

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G + GFA+T+ + I+ SMFTAI   RA++  +   K++  + I
Sbjct: 566 GPIAGFAVTLAIGIVTSMFTAIIGTRAVVNLVWGGKRLDKLSI 608



 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 77/175 (44%), Gaps = 5/175 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP +  E I KG   V +  I +L+ + + +K  F L A   L  ++   +G  +L    
Sbjct: 435 GPSLGAENIEKGFTAVALGFIFVLVLMLLYYK-AFGLVANLALAANLVLIVGVMSLIPDA 493

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              L  +A ++  +G +V+  V++++R+R+ +       S +  I    +         +
Sbjct: 494 ALTLPGIAGIVLTVGMAVDANVLIFERIREEL---EDGRSPQQAIHHGYDSAFSTIFDAN 550

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +   I+ + +   G   I  FA+ +A GIV +  ++I     ++  ++  +  + 
Sbjct: 551 ITTLIAAVILFAVGTGPIAGFAVTLAIGIVTSMFTAIIGTRAVVNLVWGGKRLDK 605


>gi|330720191|gb|EGG98577.1| Protein-export membrane protein SecF [gamma proteobacterium
           IMCC2047]
          Length = 306

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 160/294 (54%), Gaps = 5/294 (1%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  FM  R      SI+  + SI  L    L++G+DF GG  + V   +  +L+ +
Sbjct: 1   MKTFNFDFMGKRRLAAIFSIVLLVVSIASLAFKQLSFGLDFTGGTLIEVSYQQTANLNQI 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R  LE         Q F  E + LVRL         Q    +++     +      ++ +
Sbjct: 61  RQQLEQAGYEKPVVQYFGAETDVLVRLPQGYD----QQVGAQVLSTLSEQGQYDVELRRS 116

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E VG ++  EL  +G +G++++   ++IY+ +RF+  F+LGA+  L  D+   LG F+L 
Sbjct: 117 EFVGAQVGEELREQGGLGLLLALGVVMIYVAMRFQLKFSLGAVLALGHDVLIVLGVFSLL 176

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G  F+LT +AA+L +IGYS+ND +VV DR+R+N +      S  D+I++++N+TLGR++ 
Sbjct: 177 GWNFDLTVLAALLAVIGYSLNDTIVVSDRIRENFRKMRKG-SPTDVINEALNQTLGRTLV 235

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           TS+   + ++ + V+GG +I  F++ +  G+V+   SSI++AA +LL +   + 
Sbjct: 236 TSLTTVMVLMALTVFGGELIRGFSVALMIGVVIGTYSSIYVAANVLLALGISKE 289


>gi|317052521|ref|YP_004113637.1| protein-export membrane protein SecD [Desulfurispirillum indicum
           S5]
 gi|316947605|gb|ADU67081.1| protein-export membrane protein SecD [Desulfurispirillum indicum
           S5]
          Length = 515

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 196/534 (36%), Positives = 306/534 (57%), Gaps = 41/534 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            ++L + +    + +A P                  +I+LGLDL+GG HL L+VD +  V
Sbjct: 8   KLLLIAAVIGFCIHLATP---------------LNEKIALGLDLQGGMHLALDVDTEQAV 52

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              L   ++ LR   +++ + + ++++   +I +    +  K      +      +  +L
Sbjct: 53  ERKLDAMTNALRLEAQQQHLVIGTIQRRGMQILIPVPYAEEKAEFKRLMQRRYGQL--EL 110

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             +  + L+            +  +I+++   A+ Q++E IR RIDQ G+SE T+Q+ G 
Sbjct: 111 QDEQPELLVY---------GYTTYDIEEIKELAVGQALETIRNRIDQFGVSEPTVQKQGD 161

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS---------- 236
            RI+I+LPG +D  R  +L+G TA + F  V  N S +  + G                 
Sbjct: 162 RRIIIELPGVEDVDRAVELIGRTAMLEFRLVNENVSTRDALDGFLPENSEVLYQRHMDPQ 221

Query: 237 -----DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                D   +++   V  +G  L  A   FDP+ + P V I+ D  GAR F +VT  N+G
Sbjct: 222 TNTEVDRTPFVLYRDVIFTGDRLLDARVRFDPQFNTPYVSITLDGEGARLFADVTGRNVG 281

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           + LA+VLDG V +APVIN+ IPSG+A ISG FT+E A  L+ +LR+GSLP  ++IVE R 
Sbjct: 282 RRLAIVLDGHVHSAPVINERIPSGQASISGQFTMEQATDLSIVLRSGSLPAPVDIVENRT 341

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG  LG DSI KG  ++  G+ L++LFM+  Y   GL+A+ ++ +N+I+ + LL+  GAT
Sbjct: 342 VGPTLGQDSIDKGILSVTIGMALVLLFMVAYYRLSGLLANMALLMNLIILMGLLAYFGAT 401

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGI+L IG+AVD+N+L+ ERIREE R+  S   +++ G+++A+STI D+NIT L
Sbjct: 402 LTLPGIAGIILTIGIAVDANVLIFERIREELRRGASPRLAIEEGYAKAFSTILDANITTL 461

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           I  V+LF FG G ++GFA+T+ + IL SMFTAI   RA+   I+ YK ++ + I
Sbjct: 462 IVAVILFQFGTGPIKGFAVTLSIGILASMFTAILCTRAIYELILVYKPIRKLSI 515



 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 37/174 (21%), Positives = 83/174 (47%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I KGI+ V I    +L+++   ++    L A   L++++   +G  A FG  
Sbjct: 343 GPTLGQDSIDKGILSVTIGMALVLLFMVAYYRLS-GLLANMALLMNLIILMGLLAYFGAT 401

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++++R+R+ ++      S R  I++   +     +  ++
Sbjct: 402 LTLPGIAGIILTIGIAVDANVLIFERIREELR---RGASPRLAIEEGYAKAFSTILDANI 458

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I  + +  +G   I  FA+ ++ GI+ +  ++I     I   I  ++    
Sbjct: 459 TTLIVAVILFQFGTGPIKGFAVTLSIGILASMFTAILCTRAIYELILVYKPIRK 512


>gi|33600346|ref|NP_887906.1| preprotein translocase subunit SecD [Bordetella bronchiseptica
           RB50]
 gi|33567945|emb|CAE31858.1| protein-export membrane protein [Bordetella bronchiseptica RB50]
          Length = 626

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 181/518 (34%), Positives = 285/518 (55%), Gaps = 24/518 (4%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             + LL A P ++                + LGLDLRGG H +L+VD    +        
Sbjct: 110 VALNLLPASPPWMRSL------GWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLV 163

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            ++RS L+ +   V ++ +    +  +FA +  ++   D +   L         D +   
Sbjct: 164 ADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRL--------PDLQFTE 215

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
                + +++ +L+   + +V   A++Q++  +  RI+++G++E  IQ+ G+ RI++QLP
Sbjct: 216 TSDGGKLQLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLP 275

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248
           G QD ++ ++LLG TA +    V  + + +         FG+    D DG   LV  +V 
Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVV 335

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304
           ++G +L  A    D +T +P V ++ D  GAR F +VTRDNIGK +         G V+T
Sbjct: 336 LTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           APVI   I  G+ QISG+ T E A   A +LRAG+L   ++I+EER +G  LG+D+I KG
Sbjct: 396 APVIRSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKG 455

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             + + G + I +F+IV Y  +G+ +   + +NV+L LALLS+L ATLTLP IA I L +
Sbjct: 456 FYSTLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTL 515

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+A+D+N+L+NERIREE R   +   ++  GF RA+ TI DSN+T LI  + L  FG G 
Sbjct: 516 GMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +RGFA+   L I+ SMF+++  VRA+       KK  S
Sbjct: 576 IRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLS 613



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 83/209 (39%), Gaps = 4/209 (1%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G   A+      +  +   +    +I     +GP +  + I KG    +   IA+
Sbjct: 407 QVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAI 466

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            I+I + +   F + +   L +++   L   ++      L  +AA+   +G +++  V++
Sbjct: 467 AIFIIVYYHL-FGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLI 525

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
            +R+R+ ++      + +  I        G  + +++   I  L +  +G   I  FA+ 
Sbjct: 526 NERIREELR---NGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              GIV +  SS+     +    Y  + K
Sbjct: 583 HCLGIVTSMFSSVVGVRALANLWYGRKKK 611



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 30/128 (23%), Gaps = 29/128 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I   +   IGLL  LPNF  +S                           ++V 
Sbjct: 3   RYPLWKYITVLVAVVIGLLYTLPNFYGESPA-------------------------VQVS 37

Query: 62  EDDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       L+     + +         +        +   F  +  +    D +  
Sbjct: 38  SAKATIKVDQATLEQVQQIIENAQLPADSVYYEQNGTLGTVRARFPSTDVQLQARDLIDR 97

Query: 118 FLQGVNSK 125
            L  V   
Sbjct: 98  TLNTVAGD 105


>gi|33595818|ref|NP_883461.1| preprotein translocase subunit SecD [Bordetella parapertussis
           12822]
 gi|33565897|emb|CAE36445.1| protein-export membrane protein [Bordetella parapertussis]
          Length = 626

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 181/518 (34%), Positives = 285/518 (55%), Gaps = 24/518 (4%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             + LL A P ++                + LGLDLRGG H +L+VD    +        
Sbjct: 110 VALNLLPASPPWMRSL------GWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLV 163

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            ++RS L+ +   V ++ +    +  +FA +  ++   D +   L         D +   
Sbjct: 164 ADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRL--------PDLQFTE 215

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
                + +++ +L+   + +V   A++Q++  +  RI+++G++E  IQ+ G+ RI++QLP
Sbjct: 216 TSDGGKLQLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLP 275

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248
           G QD ++ ++LLG TA +    V  + + +         FG+    D DG   LV  +V 
Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVV 335

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304
           ++G +L  A    D +T +P V ++ D  GAR F +VTRDNIGK +         G V+T
Sbjct: 336 LTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           APVI   I  G+ QISG+ T E A   A +LRAG+L   ++I+EER +G  LG+D+I KG
Sbjct: 396 APVIRSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKG 455

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             + + G + I +F+IV Y  +G+ +   + +NV+L LALLS+L ATLTLP IA I L +
Sbjct: 456 FYSTLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTL 515

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+A+D+N+L+NERIREE R   +   ++  GF RA+ TI DSN+T LI  + L  FG G 
Sbjct: 516 GMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +RGFA+   L I+ SMF+++  VRA+       KK  S
Sbjct: 576 IRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLS 613



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 83/209 (39%), Gaps = 4/209 (1%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G   A+      +  +   +    +I     +GP +  + I KG    +   IA+
Sbjct: 407 QVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAI 466

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            I+I + +   F + +   L +++   L   ++      L  +AA+   +G +++  V++
Sbjct: 467 AIFIIVYYHL-FGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLI 525

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
            +R+R+ ++      + +  I        G  + +++   I  L +  +G   I  FA+ 
Sbjct: 526 NERIREELR---NGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              GIV +  SS+     +    Y  + K
Sbjct: 583 HCLGIVTSMFSSVVGVRALANLWYGRKKK 611



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 30/128 (23%), Gaps = 29/128 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I   +   IGLL  LPNF  +S                           ++V 
Sbjct: 3   RYPLWKYITVLVAVVIGLLYTLPNFYGESPA-------------------------VQVS 37

Query: 62  EDDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       L+     + +         +        +   F  +  +    D +  
Sbjct: 38  SAKATIKVDQATLEQVQQIIENAQLPADSVYYEQNGTLGAVRARFPSTDVQLQARDLIDR 97

Query: 118 FLQGVNSK 125
            L  V   
Sbjct: 98  TLNTVAGD 105


>gi|161621301|ref|YP_585088.2| preprotein translocase subunit SecD [Cupriavidus metallidurans
           CH34]
          Length = 621

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 168/514 (32%), Positives = 271/514 (52%), Gaps = 29/514 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL   P +L                + LGLDLRGG H +L+VD    V+  L   
Sbjct: 109 VVALNLLSGSPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ + I    + +   ++T+ F++    E     +   L+             
Sbjct: 160 AGDARTLLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRE------------ 207

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           L  T     I    ++     V   A++Q++  +  R++++G++E  IQ+ GS RI++QL
Sbjct: 208 LAFTMDGTNIVGTFTEAARKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQL 267

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK----GFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P+           FG       +    L+  +V  
Sbjct: 268 PGVQDTAKAKDIIGRTATLEARLADPDVRNPRPGDPVPFGDELFTQGNSAPVLLRKQVIF 327

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R   +V+R+NIGKP+ +VL  +    +   
Sbjct: 328 TGDRIESASAGFDQNQ-RPSVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLTV 386

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+      QI+G+++ E A  LA +LRAGSL   + I+EER +G  LG+D+I KG  
Sbjct: 387 ATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFD 446

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           ++  G   I +FM++ Y  +G+ +  ++ +N++L +A+LS+L ATLTLP IA I L +G+
Sbjct: 447 SVAYGFAAIAVFMVLYYMLFGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGM 506

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+D+N+L+NERIREE R   S   S+ +GF RA++TI DSN+T LIA + L  FG G VR
Sbjct: 507 AIDANVLINERIREELRAGASPQMSIAIGFERAWATILDSNVTTLIAGLALLAFGSGPVR 566

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           GFA+   L IL SMF+A+   R ++      KK 
Sbjct: 567 GFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKK 600



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG   V     A+ +++ + +   F + ++  L +++   +
Sbjct: 424 MEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYY-MLFGVFSVIALGVNLLLLV 482

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+  ++G +++  V++ +R+R+ ++      S +  I       
Sbjct: 483 AVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRA---GASPQMSIAIGFERA 539

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FA+    GI+ +  S++F    ++   Y  + 
Sbjct: 540 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK 599

Query: 829 K 829
           K
Sbjct: 600 K 600



 Score = 39.3 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISL 46
          R   W  I+  +   IG+   +PNF  ++   +  SA    ++ L
Sbjct: 3  RYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKVDL 47


>gi|54307940|ref|YP_128960.1| preprotein translocase subunit SecD [Photobacterium profundum SS9]
 gi|46912366|emb|CAG19158.1| putative protein-export membrane protein SecD [Photobacterium
           profundum SS9]
          Length = 617

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 152/537 (28%), Positives = 285/537 (53%), Gaps = 42/537 (7%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L    P++L                + LGLDLRGG H ++EVD D  +   L  
Sbjct: 99  FVVALNLAALTPDWLESIGAS---------PMKLGLDLRGGVHFLMEVDMDAAMEKLLGQ 149

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             +  R+ L++  +   ++ +  + + +   +    +          +   ++L+ D   
Sbjct: 150 QEETFRTELREAKVRYRAISKTDSSVAVRLRNDEDLKAA--------ETALAQLHPDMLF 201

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
               +     ++   ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G++RI+++
Sbjct: 202 TDSNSNGRFVLTAQFTEARLKEIRNYAVEQNITILRNRVNELGVAEPLVQRQGANRIVVE 261

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F +V                G       D    +++ ++
Sbjct: 262 LPGVQDTARAKEILGATATLEFREVDSTADLAAAAAGRVPAGSEVKYTRDKRPAVLKKRI 321

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302
            ++G H+    ++   +  +P V+IS D  G  +    +R+N+GK +A V          
Sbjct: 322 ILAGSHITD-ASSSADEYGRPQVNISLDSEGGSKMTAFSRNNVGKLMATVFTEYKDSGKR 380

Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                        +      Q       +I+G  +   A  LA +LRAG+L   ++IVEE
Sbjct: 381 QADGKVILQKHEEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGALIAPISIVEE 440

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  +G  +I  G  A++ G+V ++LF ++ Y  +GL+A+ ++ +N++L + ++S++ 
Sbjct: 441 RTIGPSMGQQNIDMGIQAMIWGMVAVMLFTLIYYRGFGLIANMALVMNLVLIIGVMSMIP 500

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R+ +S   ++  G++ A+STI D+NI
Sbjct: 501 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIQQGYANAFSTIADANI 560

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++LF  G GA++GFA+T+ + IL SMFTAI   RA++ F+   K++  + I
Sbjct: 561 TTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNFVYGGKRVDKLSI 617



 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 101/245 (41%), Gaps = 5/245 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D    +++ + +        N    +  L R     G           +  +   
Sbjct: 371 FTEYKDSGKRQADGKVILQKHEEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGA 430

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI  +I   +A++++  I ++  F L A   L++++
Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQAMIWGMVAVMLFTLIYYR-GFGLIANMALVMNL 489

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      S +  I +
Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQ 546

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     ++ F+
Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNFV 606

Query: 824 YDWRA 828
           Y  + 
Sbjct: 607 YGGKR 611


>gi|93355730|gb|ABF09819.1| SecYEG protein translocase auxiliary subunit [Cupriavidus
           metallidurans CH34]
          Length = 636

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 168/514 (32%), Positives = 271/514 (52%), Gaps = 29/514 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL   P +L                + LGLDLRGG H +L+VD    V+  L   
Sbjct: 124 VVALNLLSGSPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMKGAVDKKLDSL 174

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ + I    + +   ++T+ F++    E     +   L+             
Sbjct: 175 AGDARTLLRDKNIRHGGIDRDGERLTVRFSNGDDAERARGILADNLRE------------ 222

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           L  T     I    ++     V   A++Q++  +  R++++G++E  IQ+ GS RI++QL
Sbjct: 223 LAFTMDGTNIVGTFTEAARKTVQDGAVKQNITTLHNRVNELGVAEPVIQQQGSDRIVVQL 282

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK----GFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P+           FG       +    L+  +V  
Sbjct: 283 PGVQDTAKAKDIIGRTATLEARLADPDVRNPRPGDPVPFGDELFTQGNSAPVLLRKQVIF 342

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R   +V+R+NIGKP+ +VL  +    +   
Sbjct: 343 TGDRIESASAGFDQNQ-RPSVNIKLDAQGGRMLRDVSRENIGKPMGIVLFEKGKGEVLTV 401

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+      QI+G+++ E A  LA +LRAGSL   + I+EER +G  LG+D+I KG  
Sbjct: 402 ATIQSELGSSFQITGSYSTEAANDLALLLRAGSLAAPMEIIEERTIGPSLGADNIQKGFD 461

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           ++  G   I +FM++ Y  +G+ +  ++ +N++L +A+LS+L ATLTLP IA I L +G+
Sbjct: 462 SVAYGFAAIAVFMVLYYMLFGVFSVIALGVNLLLLVAVLSMLQATLTLPGIAAIALVLGM 521

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+D+N+L+NERIREE R   S   S+ +GF RA++TI DSN+T LIA + L  FG G VR
Sbjct: 522 AIDANVLINERIREELRAGASPQMSIAIGFERAWATILDSNVTTLIAGLALLAFGSGPVR 581

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           GFA+   L IL SMF+A+   R ++      KK 
Sbjct: 582 GFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKKK 615



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 80/181 (44%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG   V     A+ +++ + +   F + ++  L +++   +
Sbjct: 439 MEIIEERTIGPSLGADNIQKGFDSVAYGFAAIAVFMVLYY-MLFGVFSVIALGVNLLLLV 497

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+  ++G +++  V++ +R+R+ ++      S +  I       
Sbjct: 498 AVLSMLQATLTLPGIAAIALVLGMAIDANVLINERIREELRA---GASPQMSIAIGFERA 554

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L +  +G   +  FA+    GI+ +  S++F    ++   Y  + 
Sbjct: 555 WATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCLGILTSMFSAVFFNRGLVNLWYGRKK 614

Query: 829 K 829
           K
Sbjct: 615 K 615



 Score = 39.3 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISL 46
          R   W  I+  +   IG+   +PNF  ++   +  SA    ++ L
Sbjct: 18 RYPIWKYIVILVALAIGITYTMPNFFGEAPAVQVSSAKATVKVDL 62


>gi|220905191|ref|YP_002480503.1| preprotein translocase subunit SecD [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869490|gb|ACL49825.1| protein-export membrane protein SecD [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 526

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 189/531 (35%), Positives = 288/531 (54%), Gaps = 18/531 (3%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W +IL S++  + L+ ALP+             +P ++I+LGLDL+GG HL L VD   
Sbjct: 4   RWRLILASLVFLVSLVYALPSVPVIGP--ALERVLPSSKINLGLDLKGGIHLTLGVDVAK 61

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V+  L +   +LR   + E I V   R +    TL F          ++  L       
Sbjct: 62  AVSNSLALAGQDLRRMAQDEKIIVLRPRVVGGT-TLEFILP----RAENESKLREILARH 116

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
              +   + L     +       +   + ++   A++Q++  IR RIDQ G++E  I++ 
Sbjct: 117 FPQLSVAQPLAGEGGQLRYVAHFTPAEVKRLEDMALDQALRTIRNRIDQFGVAEPDIRKQ 176

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG----------FMFGVRFLR 234
             +RI +QLPG  DP R  Q++G TA + FH V  +                M      +
Sbjct: 177 AGNRIQVQLPGISDPRRAVQIIGQTAHLEFHLVREDVDPGKAVLPPGVVVLPMLEKNPGQ 236

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +   +  VE    ++G  +  A   F    ++  V +SF+  GAR F  VT +++G+ +
Sbjct: 237 QAAEGRIAVEKDAMLTGEDVADARPAF-DNMNQSYVTMSFNARGARIFERVTGESVGRRM 295

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A+VLDG+V +APVI + I  GKA ISGNFT   A  LA +LRAGSLP  ++++EER+VG 
Sbjct: 296 AIVLDGKVYSAPVIRERIGGGKASISGNFTTAEAQDLAIVLRAGSLPAPVSVLEERSVGP 355

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG ++I  G  A + G   +V+F+   YG  GL+AD  +   +++ +A +   GATLTL
Sbjct: 356 SLGQEAIDSGISAALVGAAAVVIFIGFYYGVSGLIADLMLCFTMLIVMAGMGAFGATLTL 415

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL IG+AVD+N+L+ ERIREE R   +   ++  GF RA  +I D+N+T++I T
Sbjct: 416 PGIAGIVLTIGMAVDANVLIYERIREELRLGLTPLAAVRAGFDRAMVSITDANLTSIIVT 475

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           V+L+ FG G +RGFA+T+GL I+ SMFTAI + RA+     R+   K + I
Sbjct: 476 VILYQFGTGPIRGFAVTLGLGIVASMFTAIFVSRAIFEEWARHCGPKGLSI 526



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 77/170 (45%), Gaps = 4/170 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + +E I  GI   ++ A A++I+I   +     L A   L   +   +     FG
Sbjct: 352 SVGPSLGQEAIDSGISAALVGAAAVVIFIGFYYGVS-GLIADLMLCFTMLIVMAGMGAFG 410

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++Y+R+R+ ++L    ++    +    +  +      
Sbjct: 411 ATLTLPGIAGIVLTIGMAVDANVLIYERIREELRL---GLTPLAAVRAGFDRAMVSITDA 467

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++ + I  + +  +G   I  FA+ +  GIV +  ++IF++  I      
Sbjct: 468 NLTSIIVTVILYQFGTGPIRGFAVTLGLGIVASMFTAIFVSRAIFEEWAR 517


>gi|163793145|ref|ZP_02187121.1| Preprotein translocase subunit SecF [alpha proteobacterium BAL199]
 gi|159181791|gb|EDP66303.1| Preprotein translocase subunit SecF [alpha proteobacterium BAL199]
          Length = 317

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 118/301 (39%), Positives = 178/301 (59%), Gaps = 4/301 (1%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            L     +P    +  +++R      S L  + S+  + T GLN+GIDFKGGI + V   
Sbjct: 1   MLKPIRFVPRNPKLPIIKSRLAAFVFSALLILGSLTAVATIGLNFGIDFKGGILMEVRTP 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D+S +RS L  L +GD+S Q F  E+  L+R+Q Q GD  AQ +  E V+  +    
Sbjct: 61  GVADISAMRSTLNGLDLGDVSLQEFGDEREVLIRIQRQSGDEAAQIKATEAVRVAL---G 117

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                + TE VGP + +ELI  G++ V ++ +++L Y+W RF+W F +GA+  L  DI  
Sbjct: 118 EGVEFRRTEFVGPTVGQELIEAGVLAVGLALLSILFYVWFRFEWQFGVGALVALAHDIIS 177

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+G FA+   EFNL  VAAVLT+ GYS+ND VV+YDR+R+N++ Y   +   DL + S+N
Sbjct: 178 TMGLFAIIQHEFNLATVAAVLTIAGYSINDTVVIYDRVRENLRKY-KKMPLADLFELSVN 236

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ETL R+  TS    +++  + ++GG+V+  FA+ M +GIV+   SSI IA P+LL+    
Sbjct: 237 ETLSRTTLTSGTTLLALFAIYLFGGAVLADFALAMIWGIVIGTYSSILIAVPLLLYTGVR 296

Query: 827 R 827
           R
Sbjct: 297 R 297


>gi|33592187|ref|NP_879831.1| preprotein translocase subunit SecD [Bordetella pertussis Tohama I]
 gi|33571832|emb|CAE41345.1| protein-export membrane protein [Bordetella pertussis Tohama I]
 gi|332381604|gb|AEE66451.1| preprotein translocase subunit SecD [Bordetella pertussis CS]
          Length = 626

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 181/518 (34%), Positives = 285/518 (55%), Gaps = 24/518 (4%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             + LL A P ++                + LGLDLRGG H +L+VD    +        
Sbjct: 110 VALNLLPASPPWMRSL------GWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYDSLV 163

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            ++RS L+ +   V ++ +    +  +FA +  ++   D +   L         D +   
Sbjct: 164 ADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRL--------PDLQFTE 215

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
                + +++ +L+   + +V   A++Q++  +  RI+++G++E  IQ+ G+ RI++QLP
Sbjct: 216 TSDGGKLQLTGMLNPAAVTRVQDTALKQNINTLHNRINELGVAEPVIQQQGADRIIVQLP 275

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVE 248
           G QD ++ ++LLG TA +    V  + + +         FG+    D DG   LV  +V 
Sbjct: 276 GVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERYTDRDGRPLLVRRQVV 335

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304
           ++G +L  A    D +T +P V ++ D  GAR F +VTRDNIGK +         G V+T
Sbjct: 336 LTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVT 395

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           APVI   I  G+ QISG+ T E A   A +LRAG+L   ++I+EER +G  LG+D+I KG
Sbjct: 396 APVIRSEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKG 455

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             + + G + I +F+IV Y  +G+ +   + +NV+L LALLS+L ATLTLP IA I L +
Sbjct: 456 FYSTLYGFIAIAIFIIVYYHLFGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTL 515

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+A+D+N+L+NERIREE R   +   ++  GF RA+ TI DSN+T LI  + L  FG G 
Sbjct: 516 GMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGP 575

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +RGFA+   L I+ SMF+++  VRA+       KK  S
Sbjct: 576 IRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLS 613



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 83/209 (39%), Gaps = 4/209 (1%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G   A+      +  +   +    +I     +GP +  + I KG    +   IA+
Sbjct: 407 QVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAI 466

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            I+I + +   F + +   L +++   L   ++      L  +AA+   +G +++  V++
Sbjct: 467 AIFIIVYYHL-FGIFSTIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLI 525

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
            +R+R+ ++      + +  I        G  + +++   I  L +  +G   I  FA+ 
Sbjct: 526 NERIREELR---NGATPQQAIHHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              GIV +  SS+     +    Y  + K
Sbjct: 583 HCLGIVTSMFSSVVGVRALANLWYGRKKK 611



 Score = 44.7 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/128 (14%), Positives = 30/128 (23%), Gaps = 29/128 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I   +   IGLL  LPNF  +S                           ++V 
Sbjct: 3   RYPLWKYITVLVAVVIGLLYTLPNFYGESPA-------------------------VQVS 37

Query: 62  EDDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       L+     + +         +        +   F  +  +    D +  
Sbjct: 38  SAKATIKVDQATLEQVQQIIENAQLPVDSVYYEQNGTLGTVRARFPSTDVQLQARDLIDR 97

Query: 118 FLQGVNSK 125
            L  V   
Sbjct: 98  TLNTVAGD 105


>gi|113969726|ref|YP_733519.1| preprotein translocase subunit SecD [Shewanella sp. MR-4]
 gi|113884410|gb|ABI38462.1| protein-export membrane protein SecD [Shewanella sp. MR-4]
          Length = 616

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 160/522 (30%), Positives = 279/522 (53%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + RS L++E I
Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLREEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D+    +    +             D   + +    +  +  V
Sbjct: 164 RYAGIRNNAQGIEIKFRDAESLASAERFLKSRSN--------DMVFSDVSKGEDFALQAV 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+  + Q+   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 MSEIYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V           G         +  +G Q +++ +V ++G H+ GA  +F
Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRVSAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           D  + +P V I+ D  G   F  VT+DNIGKP+A +      +           +     
Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394

Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                  A  LA +LRAG+L   ++IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIESG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+ ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 VQAMIWGMAVVLIFMLVYYRSFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           A++GFA+T+ + I  SMFTAI   R+++  I   K++K++ I
Sbjct: 575 AIKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI 616



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 93/241 (38%), Gaps = 6/241 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  R+   S+++  I            +   +              +  +   ++   +
Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     +GP +  E I  G+  +I     +LI++ + ++  F L A   L  ++   +G 
Sbjct: 436 IVEERTIGPSLGAENIESGVQAMIWGMAVVLIFMLVYYR-SFGLIANLALTANLVMVVGV 494

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +      
Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828
                 ++  F++ L +   G   I  FA+ +  GI  +  ++I     I+       R 
Sbjct: 552 STIADANITTFLTALILFAVGTGAIKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRV 611

Query: 829 K 829
           K
Sbjct: 612 K 612


>gi|146293578|ref|YP_001184002.1| preprotein translocase subunit SecD [Shewanella putrefaciens CN-32]
 gi|145565268|gb|ABP76203.1| protein-export membrane protein SecD [Shewanella putrefaciens
           CN-32]
 gi|319426877|gb|ADV54951.1| protein-export membrane protein SecD [Shewanella putrefaciens 200]
          Length = 616

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 161/522 (30%), Positives = 279/522 (53%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + R+ L++E I
Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLREETI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R   + I + F D+    +    +             D     +    +  +  V
Sbjct: 164 RYAGIRVNASGIEIKFRDAESLASAERFLKSRSN--------DMVFTDVSKGDDFALQAV 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+  + QV   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 MSEAYLKQVKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V           G         +  +G Q +++ +V ++G H+ GA  +F
Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRISAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           D  + +P V I+ D  G   F  VT+DNIGKP+A +      +           +     
Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394

Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                  A  LA +LRAG+L   ++IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A+V G+ ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 VQAMVWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFT+I   R+++  I   K++K++ I
Sbjct: 575 AVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKTLSI 616



 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 93/241 (38%), Gaps = 6/241 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  R+   S+++  I            +   +              +  +   ++   +
Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     +GP +  E I  G+  ++     +LI++ + ++  F L A   L  ++   +G 
Sbjct: 436 IVEERTIGPSLGAENIENGVQAMVWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGV 494

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +      
Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828
                 ++  F++ L +   G   +  FA+ +  GI  +  +SI     I+       R 
Sbjct: 552 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRV 611

Query: 829 K 829
           K
Sbjct: 612 K 612


>gi|94967178|ref|YP_589226.1| protein translocase subunit secF [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549228|gb|ABF39152.1| protein translocase subunit secF [Candidatus Koribacter versatilis
           Ellin345]
          Length = 404

 Score =  215 bits (546), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 75/187 (40%), Positives = 121/187 (64%), Gaps = 1/187 (0%)

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K         ++N EIVGP++ ++L  + ++  + S   ML+Y+W RF+  + +GA+   
Sbjct: 196 KTDYFTSGFGVRNVEIVGPQVGKQLSNQALLATLYSLGGMLVYLWFRFELIYGIGAVVAC 255

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             D   T+G F+L   + +LT VAA+LTLIGYS+ND +VVYDR+R+N+KL     S  D+
Sbjct: 256 FHDTIITVGAFSLLNRDISLTVVAAILTLIGYSMNDTIVVYDRIRENIKLL-RRESLADI 314

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++KSIN+TL R++ TS   F++VL + V+GG V+  F++ +  GI++   SSI +AAP+L
Sbjct: 315 VNKSINQTLSRTILTSGLTFLTVLSLYVFGGEVLRGFSLALVIGILIGTYSSIAVAAPML 374

Query: 821 LFIYDWR 827
           +   +WR
Sbjct: 375 VAYQEWR 381


>gi|241668308|ref|ZP_04755886.1| preprotein translocase subunit SecF [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876841|ref|ZP_05249551.1| preprotein translocase subunit secF [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842862|gb|EET21276.1| preprotein translocase subunit secF [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 313

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 161/299 (53%), Gaps = 2/299 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I F+  + +    S+L  + S+  +FT GLN G+DF GG Q+ + A    +
Sbjct: 1   MEFFKQKTNIDFLGIKKYTTAFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQATSLQN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVPLS 649
            + +   L  +     +   F    N+L++      +S   +    +   K+  E    +
Sbjct: 61  SATISEKLAKVGFEHTTVTTFGENNNYLIKFTPDEINSKTSSLDSAQQYLKQQVESSLDA 120

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            + +   +GP++ +EL   G++ +II+ + +LIYI  RF+  F + A   LI D    LG
Sbjct: 121 KVLSVNYIGPQVGKELASNGVLAIIIAMVCILIYISARFEMKFGISACVALIHDPIVILG 180

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            FA F +EF+LT +AA+L +IGYS+ND VV+YDR+R+N +    + +  ++++KSIN+TL
Sbjct: 181 IFAAFQLEFDLTVLAAILAVIGYSLNDTVVIYDRVRENFRKM-RNANVVEVVNKSINDTL 239

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS    + V+ + ++GGS + +F++ +  GIVV   SSI++A  + + +   R 
Sbjct: 240 SRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 298


>gi|240080076|ref|ZP_04724619.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae FA19]
          Length = 617

 Score =  214 bits (545), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKALPQLLKLFPEA------------TLNSEGSNIVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K             +            L+  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|90414614|ref|ZP_01222587.1| protein export protein SecD [Photobacterium profundum 3TCK]
 gi|90324330|gb|EAS40899.1| protein export protein SecD [Photobacterium profundum 3TCK]
          Length = 606

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 153/537 (28%), Positives = 284/537 (52%), Gaps = 42/537 (7%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L    P++L                + LGLDLRGG H ++EVD D  +   L  
Sbjct: 88  FVVALNLAALTPDWLESIGAS---------PMKLGLDLRGGVHFLMEVDMDAAMEKLLGQ 138

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             +  R+ L++  +   ++ +  + + +   +    +          +   +KL+ D   
Sbjct: 139 QEETFRTELREAKVRYRAISKTDSSVEVRLRNDEDLKAA--------ETALAKLHPDMLF 190

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
               +     ++   ++  + ++ ++A++Q++ I+R R++++G++E  +QR G++RI+++
Sbjct: 191 IDSNSNGRFVLTAQFTEARLQEIRNYAVDQNITILRNRVNELGVAEPLVQRQGANRIVVE 250

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F +V                G       D    +++ ++
Sbjct: 251 LPGVQDTARAKEILGATATLEFREVDSTADLAAAAAGRVPAGSEVKYTRDKRPAVLKKRI 310

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302
            ++G H+    ++   +  +P V+IS D  G  +    +R+N+GK +A V          
Sbjct: 311 ILAGSHITD-ASSSADEYGRPQVNISLDSEGGSKMTAFSRNNVGKLMATVFTEYKDSGKR 369

Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                        +      Q       +I+G  +   A  LA +LRAG+L   ++IVEE
Sbjct: 370 QADGKVILQKHEEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGALIAPISIVEE 429

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  +G  +I  G  A++ G+V ++LF ++ Y  +GL+A+ ++ +N++L + ++S++ 
Sbjct: 430 RTIGPSMGQQNIDMGIQAMIWGMVAVMLFTLIYYRGFGLIANLALVMNLVLIIGVMSMIP 489

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R+ +S   ++  G+  A+STI D+NI
Sbjct: 490 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRSPQQAIQQGYGNAFSTIADANI 549

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++LF  G GA++GFA+T+ + IL SMFTAI   RA++ FI   K++  + I
Sbjct: 550 TTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNFIYGGKRVDKLSI 606



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 101/245 (41%), Gaps = 5/245 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D    +++ + +        N    +  L R     G           +  +   
Sbjct: 360 FTEYKDSGKRQADGKVILQKHEEVINQATIQTALGRNFRITGIDSQAEAHNLALLLRAGA 419

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI  +I   +A++++  I ++  F L A   L++++
Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQAMIWGMVAVMLFTLIYYR-GFGLIANLALVMNL 478

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      S +  I +
Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRSPQQAIQQ 535

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     ++ FI
Sbjct: 536 GYGNAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRAVVNFI 595

Query: 824 YDWRA 828
           Y  + 
Sbjct: 596 YGGKR 600


>gi|330830089|ref|YP_004393041.1| protein-export membrane protein SecF [Aeromonas veronii B565]
 gi|328805225|gb|AEB50424.1| Protein-export membrane protein SecF [Aeromonas veronii B565]
          Length = 315

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 163/299 (54%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR    GV  S +  + ++  LF  GLN+G+DF GG  + V   + V
Sbjct: 1   MFQILHFEKPIPFMRYAKPGVVFSSVLMVVALFFLFDRGLNWGLDFTGGTTIEVGFQQSV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L  +   LE  +I   + Q+F   ++ L RL  + G  V Q      V     ++   +
Sbjct: 61  SLDKIHDALEEQKIEGATLQHFGSSRDVLFRLTPKEGVKVEQQ--GNEVLAAAKQLDEGA 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + ++ S + +L Y+ +RF+W  ALG I +L+ D+  TLG
Sbjct: 119 VLKRVEFVGPSVGDELATDGALAMLASILCILAYVAVRFEWRLALGGILSLVHDVVITLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            FA F  EF+LT +AA++TL+GYS+ND +VV+DR+R+N +          ++D S+ ETL
Sbjct: 179 VFAYFQYEFDLTVLAALMTLVGYSLNDTIVVFDRLRENFRKVRKG-DTEYILDLSMTETL 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS   FI VL + + GG++I  FA+ M  G+     SSI++A+   +F+   R 
Sbjct: 238 SRTIITSGLTFIVVLALLLKGGALIHGFAVAMVIGVAFGTYSSIYVASAFAMFLGVKRE 296


>gi|167627740|ref|YP_001678240.1| preprotein translocase subunit SecF [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597741|gb|ABZ87739.1| preprotein translocase, subunit F, membrane protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 313

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 161/299 (53%), Gaps = 2/299 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I F+  + +    S+L  + S+  +FT GLN G+DF GG Q+ + A    +
Sbjct: 1   MEFFKQKTNIDFLGIKKYTTAFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQATSVQN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVPLS 649
            + +   L  +     +   F    N+L++      +S   +    +   K+  E    +
Sbjct: 61  SATISEKLAKVGFEHTTVTTFGENNNYLIKFTPDEINSKTSSLDSAQQYLKQQVESSLDA 120

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            + +   +GP++ +EL   G++ +II+ + +LIYI  RF+  F + A   LI D    LG
Sbjct: 121 KVLSVNYIGPQVGKELASNGVLAIIIAMVCILIYISARFEMKFGISACVALIHDPIVILG 180

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            FA F +EF+LT +AA+L +IGYS+ND VV+YDR+R+N +    + +  ++++KSIN+TL
Sbjct: 181 IFAAFQLEFDLTVLAAILAVIGYSLNDTVVIYDRVRENFRKM-RNANVVEVVNKSINDTL 239

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS    + V+ + ++GGS + +F++ +  GIVV   SSI++A  + + +   R 
Sbjct: 240 SRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 298


>gi|296132722|ref|YP_003639969.1| protein-export membrane protein SecF [Thermincola sp. JR]
 gi|296031300|gb|ADG82068.1| protein-export membrane protein SecF [Thermincola potens JR]
          Length = 300

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 153/302 (50%), Gaps = 11/302 (3%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL------NYGIDFKGGIQLGVLANRPVDL 591
           + +  +  R     IS++  +  I  +           N GIDF GG  + V   + V +
Sbjct: 1   MTLDIIGKRKIWFAISLIIILAGIASMIIKTFTLGAPLNLGIDFTGGNIITVSFTKNVSV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S VR  L+ L +G+   Q           ++ +        +VL+  K  +         
Sbjct: 61  SDVRQALDKLDLGNSVIQKTATG---EFIIRTKTLTDKEYKQVLDAFKNDVAPYQEG--K 115

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            +   V P I +EL    I  + I+++ M+IYI  RF++ F + AI  L+ D+  T+G F
Sbjct: 116 LSRNEVKPVIGKELTLNAIWALAIASVLMVIYITFRFEFKFGIAAIIALLHDVFVTMGIF 175

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           ++F  E +   VAA+LT+IGYS+ND +V++DR+R+N+       +F +L++KSI +T+ R
Sbjct: 176 SIFWWEVDSAFVAAILTIIGYSINDTIVIFDRIRENLHRKKKDENFEELVNKSIMQTMAR 235

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           S+ T +   I ++ + ++GGS I  F + M  G++  A SSIF A+P+ +    W  +  
Sbjct: 236 SINTVLTVIIVLVALLIFGGSTIRYFTLAMLIGVISGAYSSIFNASPLWVEFKYWEQRRR 295

Query: 832 RI 833
           ++
Sbjct: 296 KL 297


>gi|239998371|ref|ZP_04718295.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae 35/02]
 gi|240015936|ref|ZP_04722476.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae FA6140]
 gi|240112286|ref|ZP_04726776.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae MS11]
 gi|240115030|ref|ZP_04729092.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID18]
 gi|240117315|ref|ZP_04731377.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID1]
 gi|240122866|ref|ZP_04735822.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID332]
 gi|240125122|ref|ZP_04738008.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae
           SK-92-679]
 gi|254493095|ref|ZP_05106266.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae 1291]
 gi|268598353|ref|ZP_06132520.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae MS11]
 gi|268600709|ref|ZP_06134876.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID18]
 gi|268603015|ref|ZP_06137182.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID1]
 gi|268681489|ref|ZP_06148351.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID332]
 gi|268683720|ref|ZP_06150582.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae
           SK-92-679]
 gi|226512135|gb|EEH61480.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae 1291]
 gi|268582484|gb|EEZ47160.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae MS11]
 gi|268584840|gb|EEZ49516.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID18]
 gi|268587146|gb|EEZ51822.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID1]
 gi|268621773|gb|EEZ54173.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae PID332]
 gi|268624004|gb|EEZ56404.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae
           SK-92-679]
          Length = 617

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKALPQLLKLFPEA------------TLNSEGSNIVLA 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K             +            L+  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 571 GILTSMYSSVVVFRALVNLWYGRRRK 596



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 569 CLGILTSMYSSVVVFRALVNLWYGRRRK 596



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|156502268|ref|YP_001428333.1| preprotein translocase subunit SecF [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|156252871|gb|ABU61377.1| protein-export membrane protein SecF [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 314

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 160/300 (53%), Gaps = 3/300 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                   +I F+  + +    S+L  + S+  +FT GLN G+DF GG Q+ +  +    
Sbjct: 1   MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648
            S   +   +    + +     G+ N  +        +     + +  +    ++     
Sbjct: 61  DSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVENSLD 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           + +Q+   +GP++ +EL   G++ +I++ + +LIYI  RF+  F + A   L+ D    L
Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N +    + S  +++++SIN+T
Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNRSINDT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS    + V+ + ++GGS + +F++ +  GIVV   SSI++A+ + + +   R 
Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVASVVAVALGLNRE 299


>gi|51473235|ref|YP_066992.1| preprotein translocase subunit SecF [Rickettsia typhi str.
           Wilmington]
 gi|81390306|sp|Q68XY2|SECF_RICTY RecName: Full=Protein-export membrane protein secF
 gi|51459547|gb|AAU03510.1| protein-export membrane protein secF [Rickettsia typhi str.
           Wilmington]
          Length = 308

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 102/306 (33%), Positives = 172/306 (56%), Gaps = 2/306 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +     +P+ I   FM  +      SI+ S+ S+  +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRFVPNKINFDFMNFKKVSYSFSIILSLISLIWIGIYKFNFGIDFVGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +R  DL  +R+ L +L IG++  QNF+ E +  +R      +      +  +        
Sbjct: 61  DRAPDLPKMRAVLSALGIGEVVLQNFESEHDLSIRF-GSSSEENLMKNIDIIKTSLRNNF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R LI  G + ++ S +A+++YI +RF+WYF  G +  L+ D+ 
Sbjct: 120 PYNFEYRKVDFVGPQVGRHLIEAGAMAMLFSFLAIMVYIGVRFEWYFGFGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ SI
Sbjct: 180 LALGFMSITKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    +
Sbjct: 239 NETLSRTILTVITTLLANLALILFGGKAIHSFSVLVFFGIIAGTYSSIFISAPILTIFAN 298

Query: 826 WRAKNA 831
            +    
Sbjct: 299 RKFNKK 304


>gi|19704035|ref|NP_603597.1| protein translocase subunit secF [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714227|gb|AAL94896.1| Protein translocase subunit secF [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 317

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 86/295 (29%), Positives = 147/295 (49%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +  ++     + IS++    SI + FT GLNYGIDF GG    +  N         
Sbjct: 1   MKTNLHVIKNIKIYLSISLVLVTLSIVIFFTKGLNYGIDFSGGNLFQLKYNGTTVTLNQI 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +        ++   N +  K  +             +   +       + +   T+   +
Sbjct: 61  NENLDKLAKELPQINSNSRKVQISDDGTIIVRVPEISENDKGKVLNNLKELGSYTLDKED 120

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  I  +L +  I  + I AI ++IYI +RF++ FA+G I +L+ DI   +GF AL G
Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVIYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E +   +AA+LT++GYS+ND +V+YDR+R+N+K           +D+SIN+T  RS+ T
Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWILEQCMDESINQTAIRSLNT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           S+    SV+ + V+GG+ + +F + +  GI+    SSIF+A P++  +   +  N
Sbjct: 241 SVTTLFSVIAILVFGGASLKTFIMTLLIGILAGTYSSIFVATPVVYLLNKRKGNN 295


>gi|157961298|ref|YP_001501332.1| preprotein translocase subunit SecD [Shewanella pealeana ATCC
           700345]
 gi|157846298|gb|ABV86797.1| protein-export membrane protein SecD [Shewanella pealeana ATCC
           700345]
          Length = 610

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 158/522 (30%), Positives = 269/522 (51%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + R+ L+ E I
Sbjct: 98  NLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMTEAKVADFRTDLRAEKI 157

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D+       + +             D          +  +   
Sbjct: 158 RYAGIRNGAKGIEIKFRDAETLTKAENFLKSRSN--------DMVFQDKTVGDDYVLVAN 209

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            S+  + Q+   A++Q++  +R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 210 PSEAYLKQIKEEALQQNITTLRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 269

Query: 207 GTTAKMSFHKVL-----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
             TA + FH V                G    +   G   +++  V ++G H+ GA  +F
Sbjct: 270 SATASIEFHMVDEKADVQAAMSGRVPAGSELYQRRTGGPVVLKKAVMLTGDHIQGAQPSF 329

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA---------------- 305
           D  + +P V I+ D  G   F  VT+DNIGKP+A +      T                 
Sbjct: 330 DEYS-RPQVAINLDAKGGSIFSNVTKDNIGKPMATLFIEYKDTGEKNADGSVKMKKIEEV 388

Query: 306 -PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
             V       G+  +        A  LA +LRAG+L   + IVEER +G  LG ++I  G
Sbjct: 389 ISVATIQARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGKENIDNG 448

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+ ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 449 MQAMIWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 508

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 509 VGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 568

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFT I   R+++  I   K++K + I
Sbjct: 569 AVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI 610



 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 91/238 (38%), Gaps = 6/238 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++   S+++  I            +   +              +  +   ++    I   
Sbjct: 374 KNADGSVKMKKIEEVISVATIQARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEE 433

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +GP + +E I  G+  +I     +LI++ + ++  F L A   L  ++   +G  ++ 
Sbjct: 434 RTIGPSLGKENIDNGMQAMIWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGVMSMI 492

Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +          
Sbjct: 493 PGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHEGYGNAFSTIA 549

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
             ++  F++ L +   G   +  FA+ +  GI  +  + I     I+       R K 
Sbjct: 550 DANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKK 607


>gi|91774866|ref|YP_544622.1| preprotein translocase subunit SecF [Methylobacillus flagellatus
           KT]
 gi|91708853|gb|ABE48781.1| protein translocase subunit secF [Methylobacillus flagellatus KT]
          Length = 311

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 165/298 (55%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM        IS++  + S+  L T GL+ G+DF GG  + V   +  +
Sbjct: 1   MEFFRIKKDIPFMSYGRLTTTISLVTFLLSVFFLATKGLHLGVDFTGGTMMEVSYPQAAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  ++ + + D + QNF   ++ L+RL  +PG S AQ  + + V   +    P   
Sbjct: 61  LDNIRKAVDEIGLKDATVQNFGTSQDVLIRLPIKPGLSTAQ--LSDQVLAALAADNPEVK 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +   E VGP++ +EL  KG + ++   + ++ Y+ +RF+W FA+ A+   + D+   LGF
Sbjct: 119 LHRVEFVGPQVGQELYEKGALAMLFVCVGIMAYLAMRFEWRFAVAAVIANMHDVIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EFNLT +AAVL ++GYSVN+ VVV+DR+R+N +      S  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFNLTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRK-ASVPEVINNAITRTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ T  +  + VL M  +GG V+ +FA+ +  GI+    SS+ +A+PI +++   R 
Sbjct: 238 RTIITHFSTELMVLSMLFFGGEVLHNFALALTIGILFGIYSSVLVASPIAMYLGVSRE 295



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/182 (21%), Positives = 90/182 (49%), Gaps = 5/182 (2%)

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVI 399
             ++ +     VG  +G +   KG  A++   V I+ ++ + +  ++ + A  +   +VI
Sbjct: 114 NPEVKLHRVEFVGPQVGQELYEKGALAMLFVCVGIMAYLAMRFEWRFAVAAVIANMHDVI 173

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFS 457
           + L   +       L  +A ++  +G +V+ +++V +R+RE  RK +  SV   ++   +
Sbjct: 174 IILGFFAFFQWEFNLTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRKASVPEVINNAIT 233

Query: 458 RAYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           R  S TI     T L+   +LFF GG  +  FA+ + + IL  +++++ +   + +++  
Sbjct: 234 RTMSRTIITHFSTELMVLSMLFF-GGEVLHNFALALTIGILFGIYSSVLVASPIAMYLGV 292

Query: 517 YK 518
            +
Sbjct: 293 SR 294


>gi|329113325|ref|ZP_08242106.1| Protein-export membrane protein SecD [Acetobacter pomorum DM001]
 gi|326697150|gb|EGE48810.1| Protein-export membrane protein SecD [Acetobacter pomorum DM001]
          Length = 521

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 199/502 (39%), Positives = 289/502 (57%), Gaps = 12/502 (2%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87
           P  M   FPS  P  +I LGLDLRGGS+L+++VD     +  LQ  ++  R  L K  +G
Sbjct: 26  PNGMRKPFPSI-PWRQIHLGLDLRGGSYLLMQVDLKSLTHDRLQTLAENTRDALLKSQLG 84

Query: 88  VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL-LVTTTEKEISIV 146
             ++    +K T+SF   R        V         KL         +    +  I++V
Sbjct: 85  YQNINVNADKNTVSFQP-RDTAEADRDV-----ATLDKLPRVVPNEFSVKKQDDGTIALV 138

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS + I      A+ QS+EI+R+RID  G  +  I R G  RI+++LPG  DP R++ LL
Sbjct: 139 LSADAIKARAREAVTQSIEIVRRRIDGTGAVDPEITRQGDDRIVVELPGISDPERIKALL 198

Query: 207 GTTAKMSFHKVLPN----NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           GTTAKM+F  V  N          +  V     ++G    V D V++ G  L  A A  D
Sbjct: 199 GTTAKMTFRLVDSNPLHATYAPPGVSLVPMANPAEGGPLPVFDHVDVDGTDLTNAGAVID 258

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
            +T +  V  SFD +G R F  VT+ N+GK  A+VLD +V+ APVI   I  G  QI+G 
Sbjct: 259 QQTGEWAVSFSFDSVGTRAFSSVTQTNVGKRFAIVLDNKVIEAPVIRTPITGGNGQITGG 318

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           F  + A  LA MLRAG+LP  L++VE+R++G  LG+DSI  G  ++  G +L+V+FM++ 
Sbjct: 319 FDAQKATDLALMLRAGALPAPLSVVEQRSIGPSLGADSIRAGILSLGVGFLLVVVFMVLF 378

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           YG++G  AD ++  N++L +A+LSL  ATLTLP +AG++L +G+AVD+NIL+NERIREE 
Sbjct: 379 YGRFGWYADIALLANLVLMVAILSLFEATLTLPGMAGMLLTLGMAVDANILINERIREEV 438

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
            + ++   ++  GF RA STI DSN TA +A V+LF FG G VRGFA+T+ + I  ++FT
Sbjct: 439 ARGRTPLAAMQTGFERATSTIVDSNATAFLAHVMLFVFGTGPVRGFALTITIGIATTLFT 498

Query: 503 AISIVRAMMIFIIRYKKMKSID 524
            + + R +M       +  S+ 
Sbjct: 499 TLLLSRMLMARWYARTRPASLP 520



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 98/262 (37%), Gaps = 10/262 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS----- 628
              G   +    +     +       ++        +    +  ++R     G+      
Sbjct: 259 QQTGEWAVSFSFDSVGTRAFSSVTQTNVGKRFAIVLDNKVIEAPVIRTPITGGNGQITGG 318

Query: 629 -VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             AQ      +  +   +    ++     +GP +  + IR GI+ + +  + +++++ + 
Sbjct: 319 FDAQKATDLALMLRAGALPAPLSVVEQRSIGPSLGADSIRAGILSLGVGFLLVVVFMVLF 378

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +   F   A   L+ ++   +   +LF     L  +A +L  +G +V+  +++ +R+R+ 
Sbjct: 379 YG-RFGWYADIALLANLVLMVAILSLFEATLTLPGMAGMLLTLGMAVDANILINERIREE 437

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +    +           V ++  AF++ + + V+G   +  FA+ +  GI  
Sbjct: 438 VA---RGRTPLAAMQTGFERATSTIVDSNATAFLAHVMLFVFGTGPVRGFALTITIGIAT 494

Query: 808 AASSSIFIAAPILLFIYDWRAK 829
              +++ ++  ++   Y     
Sbjct: 495 TLFTTLLLSRMLMARWYARTRP 516


>gi|253997303|ref|YP_003049367.1| protein-export membrane protein SecD [Methylotenera mobilis JLW8]
 gi|253983982|gb|ACT48840.1| protein-export membrane protein SecD [Methylotenera mobilis JLW8]
          Length = 609

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 162/509 (31%), Positives = 286/509 (56%), Gaps = 24/509 (4%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L R P  +       + LGLDLRGG H +L+VD    ++   + +  + R+ L+KE +
Sbjct: 104 NLLSRSPDWLRSIGAKPMYLGLDLRGGVHFLLQVDMKAALDKAAERFVGDFRTALRKERV 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +    + + F  +         ++     +  K + + +  +        +S  
Sbjct: 164 SYAGVTREGQTVQIRFTSAAELAKARKIISNQYPDLTLKDSANGEDIV--------LSAS 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+     ++   A++Q+++ +  RI+++G++E  IQ+ G  R+++QLPG QD ++ +++L
Sbjct: 216 LNAVEQKRIQEFALKQNIQTLHNRINELGVAEPIIQQQGMDRVVVQLPGVQDTAKAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKK---------GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           G TA +    V    S               G    +D +G   LV+  V ++G ++  A
Sbjct: 276 GRTATLEIRLVDEEKSDAMTLEKAAQGQAPIGTDAFKDREGRPILVKKNVVLTGDYITDA 335

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIP 313
               + +T + VV+++ D  GAR F +VTR+N+GK +        +  V+TAPVIN+ I 
Sbjct: 336 GPGVNGQTGQSVVNVTLDARGARVFQQVTRENVGKRMAILLIEKGNTEVVTAPVINEEIG 395

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
            G+ QISG    + A  ++ +LRAG+L   ++IVEER VG  +G ++I +G  + + G  
Sbjct: 396 GGRVQISGMANTQEATDISLLLRAGALAAPMDIVEERTVGPSMGEENIKRGMHSTLWGFA 455

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
            I +FMIV Y  +G ++  ++ +N++L +A+LS+L ATLTLP +A + L +G+A+D+N+L
Sbjct: 456 AIAVFMIVYYMVFGGISVLALGINLLLLVAVLSMLQATLTLPGLAAVALTLGMAIDANVL 515

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
           VNERIREE R   +   S+ +G+ RA+ TI DSN+T +IA + LF FG G V+GFA+   
Sbjct: 516 VNERIREELRSGNTPQASIHIGYDRAWDTILDSNVTTMIAGIALFLFGSGPVKGFAVVHV 575

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKS 522
           L IL SMF+A+ + RA++ ++   ++  +
Sbjct: 576 LGILTSMFSAVVVSRAIVNWVYGSRRKTT 604



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 89/201 (44%), Gaps = 4/201 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             Q      +  +   +     I     VGP +  E I++G+   +    A+ +++ + +
Sbjct: 406 NTQEATDISLLLRAGALAAPMDIVEERTVGPSMGEENIKRGMHSTLWGFAAIAVFMIVYY 465

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              F   ++  L +++   +   ++      L  +AAV   +G +++  V+V +R+R+ +
Sbjct: 466 -MVFGGISVLALGINLLLLVAVLSMLQATLTLPGLAAVALTLGMAIDANVLVNERIREEL 524

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +   +  + +  I    +      + +++   I+ + + ++G   +  FA+    GI+ +
Sbjct: 525 R---SGNTPQASIHIGYDRAWDTILDSNVTTMIAGIALFLFGSGPVKGFAVVHVLGILTS 581

Query: 809 ASSSIFIAAPILLFIYDWRAK 829
             S++ ++  I+ ++Y  R K
Sbjct: 582 MFSAVVVSRAIVNWVYGSRRK 602



 Score = 43.1 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/119 (15%), Positives = 31/119 (26%), Gaps = 25/119 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I    +  +GL+ A+PN   +S                         +     
Sbjct: 3   RYPLWKNIFVVFMILMGLIYAIPNLFGESPA---------------------IQVTPTKS 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                   L          L+KE I    +      +   FA++  +    D +   L 
Sbjct: 42  TSKIDPALLAQV----EQILQKEKIAYDGIYLDARGVKARFANTDTQIKAKDLLQANLS 96


>gi|258542154|ref|YP_003187587.1| preprotein translocase subunit SecD [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633232|dbj|BAH99207.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636291|dbj|BAI02260.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639344|dbj|BAI05306.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642400|dbj|BAI08355.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645455|dbj|BAI11403.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648508|dbj|BAI14449.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651561|dbj|BAI17495.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654552|dbj|BAI20479.1| protein translocase membrane subunit SecD [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 521

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 199/502 (39%), Positives = 289/502 (57%), Gaps = 12/502 (2%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87
           P  M   FPS  P  +I LGLDLRGGS+L+++VD     +  LQ  ++  R  L K  +G
Sbjct: 26  PNGMRKPFPSI-PWRQIHLGLDLRGGSYLLMQVDLKSLTHDRLQTLAENTRDTLLKSQLG 84

Query: 88  VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL-LVTTTEKEISIV 146
             ++    +K T+SF   R        V         KL         +    +  I++V
Sbjct: 85  YQNINVDADKNTVSFQP-RDAAEADTDV-----ATLDKLPRVVPNEFSVKKQDDGTIALV 138

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS + I      A+ QS+EI+R+RID  G  +  I R G  RI+++LPG  DP R++ LL
Sbjct: 139 LSADAIKARAREAVTQSIEIVRRRIDGTGAVDPEITRQGDDRIVVELPGISDPERIKALL 198

Query: 207 GTTAKMSFHKVLPN----NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           GTTAKM+F  V  N          +  V     ++G    V D V++ G  L  A A  D
Sbjct: 199 GTTAKMTFRLVDSNPLHATYPPPGVSLVPMANPAEGGPLPVFDHVDVDGTDLTNAGAVID 258

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
            +T +  V  SFD +G R F  VT+ N+GK  A+VLD +V+ APVI   I  G  QI+G 
Sbjct: 259 QQTGEWAVSFSFDSVGTRAFSSVTQTNVGKRFAIVLDNKVIEAPVIRTPITGGNGQITGG 318

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           F  + A  LA MLRAG+LP  L++VE+R++G  LG+DSI  G  ++  G +L+V+FM++ 
Sbjct: 319 FDAQKATDLALMLRAGALPAPLSVVEQRSIGPSLGADSIRAGILSLGVGFLLVVVFMVLF 378

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           YG++G  AD ++  N++L +A+LSL  ATLTLP +AG++L +G+AVD+NIL+NERIREE 
Sbjct: 379 YGRFGWYADIALLANLVLMVAILSLFEATLTLPGMAGMLLTLGMAVDANILINERIREEV 438

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
            + ++   ++  GF RA STI DSN TA +A V+LF FG G VRGFA+T+ + I  ++FT
Sbjct: 439 ARGRTPLAAMQTGFERATSTIVDSNATAFLAHVMLFVFGTGPVRGFALTITIGIATTLFT 498

Query: 503 AISIVRAMMIFIIRYKKMKSID 524
            + + R +M       +  S+ 
Sbjct: 499 TLLLSRMLMARWYARTRPASLP 520



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 98/262 (37%), Gaps = 10/262 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS----- 628
              G   +    +     +       ++        +    +  ++R     G+      
Sbjct: 259 QQTGEWAVSFSFDSVGTRAFSSVTQTNVGKRFAIVLDNKVIEAPVIRTPITGGNGQITGG 318

Query: 629 -VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             AQ      +  +   +    ++     +GP +  + IR GI+ + +  + +++++ + 
Sbjct: 319 FDAQKATDLALMLRAGALPAPLSVVEQRSIGPSLGADSIRAGILSLGVGFLLVVVFMVLF 378

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +   F   A   L+ ++   +   +LF     L  +A +L  +G +V+  +++ +R+R+ 
Sbjct: 379 YG-RFGWYADIALLANLVLMVAILSLFEATLTLPGMAGMLLTLGMAVDANILINERIREE 437

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +    +           V ++  AF++ + + V+G   +  FA+ +  GI  
Sbjct: 438 VA---RGRTPLAAMQTGFERATSTIVDSNATAFLAHVMLFVFGTGPVRGFALTITIGIAT 494

Query: 808 AASSSIFIAAPILLFIYDWRAK 829
              +++ ++  ++   Y     
Sbjct: 495 TLFTTLLLSRMLMARWYARTRP 516


>gi|59800644|ref|YP_207356.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae FA 1090]
 gi|268596230|ref|ZP_06130397.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae FA19]
 gi|59717539|gb|AAW88944.1| putative protein-export membrane protein [Neisseria gonorrhoeae FA
           1090]
 gi|268550018|gb|EEZ45037.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae FA19]
          Length = 618

 Score =  214 bits (545), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N +T+   D+   +    ++                    + +    I + 
Sbjct: 165 RSGTVRQAENSLTVPLQDAGDVQKALPQLLKLFPEA------------TLNSEGSNIVLT 212

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 272

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K             +            L+  +VE++G ++N A 
Sbjct: 273 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 332

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 4   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK  GI    M  + N + + F D+  +    D +   L
Sbjct: 48  ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 96


>gi|182677988|ref|YP_001832134.1| protein-export membrane protein SecF [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182633871|gb|ACB94645.1| protein-export membrane protein SecF [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 319

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 121/302 (40%), Positives = 182/302 (60%), Gaps = 5/302 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L P+     FMR R      S L SI ++ +  T G+N+GIDF GG  L + A  
Sbjct: 1   MKLLRLAPENTRFPFMRLRRLSYPFSALMSILAVTIFLTWGMNFGIDFSGGTLLELRAKE 60

Query: 588 -PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            P DL  +R   + L IGDI  Q F    +  VR   QPG   AQ   +  V++ I    
Sbjct: 61  GPADLVELRELGDHLNIGDIEVQGFGTPSDVTVRFGLQPGGDAAQEAAVNRVRQTI---G 117

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               I+  E+VGP++S EL++ G +GV++S IA+L Y+W RF+W FA+GAI   + D+  
Sbjct: 118 ERYDIRRIEVVGPRVSGELVQSGTLGVVLSIIAVLGYLWFRFEWQFAVGAIIATMHDLLL 177

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+GFF++  +EFN T++AA+LT++GYS+N+ VVV DR+R+ MK Y   I    LID S+N
Sbjct: 178 TVGFFSVTQLEFNTTSIAAILTIVGYSLNETVVVLDRIREMMKKYRK-IPTDQLIDLSVN 236

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             L R++ T+   F+++L + ++GG VI SF++ M +GIVVA  SS+FI +P+L+++   
Sbjct: 237 AVLPRTIMTATTVFLALLSLVIFGGQVIRSFSLAMIWGIVVATYSSVFICSPMLIYLGLR 296

Query: 827 RA 828
             
Sbjct: 297 NE 298


>gi|120598344|ref|YP_962918.1| preprotein translocase subunit SecD [Shewanella sp. W3-18-1]
 gi|120558437|gb|ABM24364.1| protein-export membrane protein SecD [Shewanella sp. W3-18-1]
          Length = 616

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 161/522 (30%), Positives = 279/522 (53%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + R+ L++E I
Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRAQLREETI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R   + I + F D+    +    +             D     +    +  +  V
Sbjct: 164 RYAGIRVNASGIEIKFRDAESLASAERFLKSRSN--------DMVFTDVSKGEDFALQAV 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+  + QV   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 MSEAYLKQVKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V           G         +  +G Q +++ +V ++G H+ GA  +F
Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRISAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           D  + +P V I+ D  G   F  VT+DNIGKP+A +      +           +     
Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394

Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                  A  LA +LRAG+L   ++IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A+V G+ ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 VQAMVWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFT+I   R+++  I   K++K++ I
Sbjct: 575 AVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKTLSI 616



 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 93/241 (38%), Gaps = 6/241 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  R+   S+++  I            +   +              +  +   ++   +
Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     +GP +  E I  G+  ++     +LI++ + ++  F L A   L  ++   +G 
Sbjct: 436 IVEERTIGPSLGAENIENGVQAMVWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGV 494

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +      
Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828
                 ++  F++ L +   G   +  FA+ +  GI  +  +SI     I+       R 
Sbjct: 552 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRV 611

Query: 829 K 829
           K
Sbjct: 612 K 612


>gi|242240320|ref|YP_002988501.1| preprotein translocase subunit SecD [Dickeya dadantii Ech703]
 gi|242132377|gb|ACS86679.1| protein-export membrane protein SecD [Dickeya dadantii Ech703]
          Length = 604

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 165/524 (31%), Positives = 285/524 (54%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD +  ++   +   D LRS L+++ +
Sbjct: 93  NLAPSTPHWLRMLGAEPMKLGLDLRGGVHFLMEVDMETALSKLQEQTMDSLRSDLREKNV 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+R+  N  + + F D + ++   D +T   +             ++ ++    +  
Sbjct: 153 QYASIRKSDNYGVEIVFRDGQQRDQSVDYLTSRHR-----------DLVITSSGSDTLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMSDARLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N        G            DG    +  +V ++G H+  +T+ 
Sbjct: 262 LGATATLEFRLVNSNVDPAALASGRVPGDTEVKNMRDGGPIALYKRVILTGDHITDSTS- 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            + + ++P V+IS D  G       T+ NIGKP+A +      +                
Sbjct: 321 GNDEYNRPQVNISLDSAGGNMMLNFTKVNIGKPMATLFVEYKDSGKKGANGRAILEKQEE 380

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q+      +I+G      A  LA +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINVATIQSPLGNSFRITGIDNPNEARQLALLLRAGALIAPIQIVEERTIGPTLGMQNIT 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL + +LFMI  Y K+G++A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 441 QGLEACLAGLAVSILFMIFFYKKFGMIATSALLSNLVLVVGIMSLLPGATLTMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+N+T LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAIG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 604



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 80/205 (39%), Gaps = 5/205 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                     +  +   ++    I     +GP +  + I +G+   +      ++++   
Sbjct: 401 DNPNEARQLALLLRAGALIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMIFF 460

Query: 688 FKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           +K  F + A + L+ ++   +G  +L  G    +  +A ++  +  +V+  V++ +R+++
Sbjct: 461 YK-KFGMIATSALLSNLVLVVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKE 519

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +   +   + +  ID+            ++   I V+ +   G   I  FAI    G+ 
Sbjct: 520 EL---SNGRTVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAIGTGSIKGFAITTGIGVA 576

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
            +  ++I     I+  +Y  +    
Sbjct: 577 TSMFTAIVGTRAIVNLLYGGKRIKK 601


>gi|218549932|ref|YP_002383723.1| preprotein translocase subunit SecD [Escherichia fergusonii ATCC
           35469]
 gi|218357473|emb|CAQ90112.1| SecYEG protein translocase auxillary subunit [Escherichia
           fergusonii ATCC 35469]
 gi|324114627|gb|EGC08595.1| protein-export membrane protein SecD [Escherichia fergusonii B253]
          Length = 615

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 171/524 (32%), Positives = 295/524 (56%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+ +N  +T++F DS+ ++              S L+   +  ++ +  +  +  
Sbjct: 164 PYTTVRKDKNYALTITFRDSKARDEAI-----------SYLSPRHQDLVISSQGDNALRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLLVSILFMILFYKKFGLIATSALVANLILIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    +SV  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +  ++++ + +K  F L A + L+ ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIEQGLEACLAGLLVSILFMILFYK-KFGLIATSALVANLILIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   S +  ID+           
Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYRGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612


>gi|152968932|ref|YP_001334041.1| preprotein translocase subunit SecD [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|262042429|ref|ZP_06015589.1| protein-export membrane protein SecD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330006902|ref|ZP_08305774.1| export membrane protein SecD [Klebsiella sp. MS 92-3]
 gi|150953781|gb|ABR75811.1| protein export protein SecD [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|259040204|gb|EEW41315.1| protein-export membrane protein SecD [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535656|gb|EGF62105.1| export membrane protein SecD [Klebsiella sp. MS 92-3]
          Length = 604

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 170/524 (32%), Positives = 291/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+ +GI
Sbjct: 93  NLAPATPRWLAALYAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSELRDKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  +++ F DS  ++              S L+   +  ++ +  +  +  
Sbjct: 153 PYATVRKEDNYGLSIVFRDSAARDQAI-----------SYLSPRHRDLVISSQGDNSLKA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDERLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -MDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILAKEEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI+ Y K+GL+A  ++  N+IL + ++SL+  ATLT+P IAGIV
Sbjct: 441 QGLEACLAGLVVSILFMILFYKKFGLIATSALIANLILIVGIMSLIPGATLTMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+N+T LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ I  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++ + +K  F L A + LI ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMILFYK-KFGLIATSALIANLILIVGIMSLIP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    GI  +  ++I     I+  +Y  +    
Sbjct: 545 ANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKK 601


>gi|330863961|emb|CBX74045.1| protein-export membrane protein secD [Yersinia enterocolitica
           W22703]
          Length = 604

 Score =  214 bits (544), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 164/537 (30%), Positives = 290/537 (54%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P++L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 89  VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LRS L+++ I   ++R++ N  + + F D + +++             S L+   + 
Sbjct: 140 MDTLRSDLREKNIPYATVRKLDNYGVEVRFRDDKTRDDAI-----------SYLSPRHRD 188

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ +     +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 189 LVIGSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 248

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 308

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 309 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKK 367

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 368 DANGRAVLVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 427

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM+V Y K+G++A  ++  N++L + ++SLL 
Sbjct: 428 RTIGPTLGSQNITQGLEACLWGLAVSILFMVVYYRKFGVIASTALLANLVLIVGVMSLLP 487

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE +  +++  ++  G+  A+S+I D+N+
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYKNGRTIQQAIHEGYKGAFSSIVDANV 547

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 429 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YKNGRTIQQAIHEGYKGAFSSIVD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 545 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|15604437|ref|NP_220955.1| preprotein translocase subunit SecD [Rickettsia prowazekii str.
           Madrid E]
 gi|6647814|sp|Q9ZCW8|SECD_RICPR RecName: Full=Protein-export membrane protein secD
 gi|3861131|emb|CAA15031.1| PROTEIN-EXPORT MEMBRANE PROTEIN SECD (secD) [Rickettsia prowazekii]
 gi|292572206|gb|ADE30121.1| Protein-export membrane protein secD [Rickettsia prowazekii Rp22]
          Length = 518

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 205/533 (38%), Positives = 323/533 (60%), Gaps = 28/533 (5%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N   W ++L  +     ++ ALPNF+  +        +P + I+LGLDLRGG++L+L+
Sbjct: 1   MQNLPKWKIVLSIICTVFAIICALPNFIQINS-----KFLPHDSINLGLDLRGGANLLLD 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           VD D ++N  ++  +D LR  L+K  IG  ++    N I L        +++   +    
Sbjct: 56  VDFDTYLNDSMENLADTLRKNLRKHKIGYKNLLVRHNNIQLEVRSPEVLKSLKKIINK-- 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         +++   + +I +  S++  + +++  +EQS+EI+R R+D  G  E 
Sbjct: 114 ----------IDPEIIIGVNKNKIKLRYSESRFNDLLNKVVEQSIEIVRMRVDSTGTKEP 163

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
           T+QR G+  IL+Q+PG ++PS L+ +LG TAK++FH V  N + +  + G   L      
Sbjct: 164 TLQRQGNKHILLQVPGSENPSYLKNILGKTAKLTFHLVDENANIEDAIKGHVPLGSMLIK 223

Query: 240 ---------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                      +++ KV +SG HL  A+A+FD  + +P+V  SF+ +G++ F E+T++N 
Sbjct: 224 GDSKHHGEYYIVIKKKVLLSGAHLTKASASFDQNS-QPIVAFSFNNLGSKIFGEITKNNT 282

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           GK LA+VLD ++L+AP+IN AI  G   I+GNFTIE+A  LA +LR GSLP  L I+EER
Sbjct: 283 GKRLAIVLDNKLLSAPIINGAIIGGNGIITGNFTIESANELALLLRVGSLPTPLKIIEER 342

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
           ++G +LG+DSI  G  A + G V + +FMI+ YG  GL A+ ++ L ++  LALLSL  A
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFVAVCIFMILSYGVIGLFANIALILALLYILALLSLFQA 402

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAGI+L IG+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI DSNIT 
Sbjct: 403 TLTLPGIAGIILTIGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATIIDSNITT 462

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           LI    L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y K K +
Sbjct: 463 LIVAFALYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDVWVKYFKPKKL 515



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 80/178 (44%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I  +A+ I++ + +     L A   LIL +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFVAVCIFMILSYGVI-GLFANIALILALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++Y+R+++ +      +S    I           + +
Sbjct: 402 ATLTLPGIAGIILTIGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATIIDS 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   +L+ ++    K  ++
Sbjct: 459 NITTLIVAFALYIFGVGAIKGFAVALTIGIISSMFSAIIITK-LLIDVWVKYFKPKKL 515


>gi|114563864|ref|YP_751378.1| preprotein translocase subunit SecF [Shewanella frigidimarina NCIMB
           400]
 gi|114335157|gb|ABI72539.1| protein translocase subunit secF [Shewanella frigidimarina NCIMB
           400]
          Length = 315

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 93/299 (31%), Positives = 165/299 (55%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F +      + F+R  F    +S++  I S   L   G+N+G+DF GG  + +  + PV
Sbjct: 1   MFQIFSVKNTVDFLRHAFPISVMSLILVIASFVSLGVQGINWGLDFTGGTVVEMEFSAPV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL+ +R+ + + +      QNF   ++ LVRL  +  + +     +  V      I    
Sbjct: 61  DLNALRATMTTDEAEGAVVQNFGSSRDILVRLPVR--NELKSDVQVAAVLTAAQSIDSGV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +  E VGP++ +EL  +G + VI++ I +LIY+  RF+W  A G++  L  D+  TLG
Sbjct: 119 IQKRVEFVGPQVGKELAEQGGLAVIVALICILIYVSFRFEWRLAAGSVAALAHDVIVTLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  +EF+LT +A +LT++GYS+ND +VVYDR+R+N        +  ++++ SI +T+
Sbjct: 179 VFSVLQLEFDLTVLAGLLTVVGYSLNDTIVVYDRIRENFLKMRKG-TPVEIVNTSITQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R+V T+    I+V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 238 SRTVITTGTTLITVIALFLKGGTMIHGFATALLLGIFVGTYSSIYVASYLAIKLGINRE 296


>gi|300715564|ref|YP_003740367.1| protein-export membrane protein [Erwinia billingiae Eb661]
 gi|299061400|emb|CAX58510.1| Protein-export membrane protein [Erwinia billingiae Eb661]
          Length = 615

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 159/538 (29%), Positives = 285/538 (52%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    + 
Sbjct: 99  FVVALNLAPATPTWLTLLAAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 149

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+ + I   ++R+  N  + + F D+  ++     ++   +           
Sbjct: 150 NIDNLRSDLRDKNIPYTNVRKTDNYGLEIRFRDAASRDAAVSYLSDRHR----------- 198

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             ++  T+   +  V++ + + +   +A++Q++ I+R R++Q+G++E  +QR GS RI++
Sbjct: 199 DLVISGTSGNTLRAVMTDDRLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVV 258

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V           G            DG    +  +
Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNTTVDPTAAANGRVPGDSEVKNTRDGQPVTLYKR 318

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T++   + ++  V+IS D  G       T+DNIGKP+A +      +  
Sbjct: 319 VILTGDHITDSTSS-QDEYNQAQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGK 377

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                Q+      +I+G      A  L+ +LRAG+L   + IVE
Sbjct: 378 KDANGRAILAKQEEVINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVE 437

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  +G+ +I +G  A + GL+  ++FM+V Y K+G++A  ++  N++L + ++SLL
Sbjct: 438 ERTIGPTMGAQNITQGLEACLWGLIASIVFMVVYYRKFGVIATSALVANLVLIVGIMSLL 497

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE +  +S+  ++  G+  A+S+I D+N
Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEEIKNGRSIQQAIHEGYKGAFSSIVDAN 557

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 558 VTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRALVNLLYGGKRITKLSI 615



 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 80/174 (45%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   IA ++++ + ++  F + A + L+ ++   +G  +L  
Sbjct: 440 TIGPTMGAQNITQGLEACLWGLIASIVFMVVYYR-KFGVIATSALVANLVLIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +K      S +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEIK---NGRSIQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I+ + +   G   I  FAI  A G+V +  ++I     ++  +Y  + 
Sbjct: 556 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRALVNLLYGGKR 609


>gi|307129896|ref|YP_003881912.1| secYEG protein translocase auxillary subunit [Dickeya dadantii
           3937]
 gi|306527425|gb|ADM97355.1| SecYEG protein translocase auxillary subunit [Dickeya dadantii
           3937]
          Length = 323

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 162/301 (53%), Gaps = 1/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +W  G+S L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYWAFGLSGLLLILSIVVMGVRGFNWGLDFTGGTVIEISLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            VDL  +R  LE     D   QNF   ++ +VR+     ++  Q    ++V         
Sbjct: 65  SVDLEQMRGALEKAGFADPLVQNFGSSRDIMVRMPPAHDETGGQALGSKVVSVINEATSQ 124

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + ++  E VGP +  +L + G + ++   I++L+Y+  RF+W  A G +  L  D+  T
Sbjct: 125 NAAVKRIEFVGPSVGADLAQNGAMALMAVLISILVYVGFRFEWRLAAGVVIALAHDVIIT 184

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +
Sbjct: 185 MGVLSLFDIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + +L + ++GG+++  F++ M  G+ +  +SSI++A+ + L +   R
Sbjct: 244 TLHRTLITSGTTLVVILMLYLFGGAMLQGFSLTMLIGVTIGTASSIYVASALALKLGMKR 303

Query: 828 A 828
            
Sbjct: 304 E 304


>gi|315127832|ref|YP_004069835.1| preprotein translocase auxillary membrane component
           [Pseudoalteromonas sp. SM9913]
 gi|315016346|gb|ADT69684.1| preprotein translocase auxillary membrane component
           [Pseudoalteromonas sp. SM9913]
          Length = 619

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 265/523 (50%), Gaps = 38/523 (7%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
               P+ +     N + LGLDL GG H  +E+D    V+  L+    + RS L++E +  
Sbjct: 106 APAQPAWLKSLGGNPMKLGLDLSGGVHFTMEIDMVTAVDNQLEQMEQDFRSDLREEKLRY 165

Query: 89  FSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            S+R+     ++ +   +   KE     +                  +  ++ +      
Sbjct: 166 RSVRRVAGSERMRVEMRNEEDKEAAERFLESRYPL---------NVYIDDSSNDNAFFAT 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+  + ++  +AI+Q+  IIR RI+QIG++E  +QR G+ RI++QLPG QD +R +++L
Sbjct: 217 MSELKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPGIQDTARAKEIL 276

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V  N             G   +   DG   +++ ++ + G H+ GA +  
Sbjct: 277 GATATLEFREVDENADISAAAQGRIPPGTEMIMSRDGYPVVLKKRIILEGSHITGAQSGA 336

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
           D      V      + GA+      R    +   V ++ +                   +
Sbjct: 337 DEYQRPQVSIKLDSKGGAKMNAFTKRAIGKRMATVFIEYKPSGKKDSEGKALPPIKVEEV 396

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 QA      +I+G      A  L+ +LRAG+L   + IVEER VG  LG ++I  
Sbjct: 397 INVATIQARLDRSFRITGIDNPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIEA 456

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A+  G   ++ FM++ Y  +GLVA+ ++  N++L + ++SL+  ATLTLP IAGIVL
Sbjct: 457 GMTAVALGFAFVLAFMLIYYKGFGLVANIALAANLVLIIGVMSLIPGATLTLPGIAGIVL 516

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE    +S   ++  G+  A+STIFD+NIT LIA ++LF  G 
Sbjct: 517 TVGMAVDANVLIFERIREELADGRSPQQAVHFGYDSAFSTIFDANITTLIAAIILFAVGT 576

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V GFA+T+ + IL SMFTAI   RA++   I  K++  + I
Sbjct: 577 GPVAGFAVTLAIGILTSMFTAIVGTRAVINLFIGGKRVDKLSI 619



 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 75/172 (43%), Gaps = 5/172 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP + +E I  G+  V +    +L ++ I +K  F L A   L  ++   +G  +L  G 
Sbjct: 446 GPSLGQENIEAGMTAVALGFAFVLAFMLIYYK-GFGLVANIALAANLVLIIGVMSLIPGA 504

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              L  +A ++  +G +V+  V++++R+R+ +       S +  +    +         +
Sbjct: 505 TLTLPGIAGIVLTVGMAVDANVLIFERIREELAD---GRSPQQAVHFGYDSAFSTIFDAN 561

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   I+ + +   G   +  FA+ +A GI+ +  ++I     ++      + 
Sbjct: 562 ITTLIAAIILFAVGTGPVAGFAVTLAIGILTSMFTAIVGTRAVINLFIGGKR 613



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 88/288 (30%), Gaps = 38/288 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  IGLL A PN   +                            ++V 
Sbjct: 4   KFPIWKYLLVLAVLAIGLLYASPNLYGRDPA-------------------------IQVS 38

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
                +  L    D++ + LKK+ +   S +    +I + F +   +    D +   L  
Sbjct: 39  GAKGTDVDL-SVVDKVNAILKKDNVSAKSTKLEDGQILVRFKNVEDQLKAQDLLRNSLSD 97

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID----------QVISHAIEQSMEIIR-Q 169
              S +N+ P +   + +       +    +              + + +EQ  +  R  
Sbjct: 98  DYISAINMAPAQPAWLKSLGGNPMKLGLDLSGGVHFTMEIDMVTAVDNQLEQMEQDFRSD 157

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
             ++     S  +  GS R+ +++  E+D     + L +   ++ +    +N    F   
Sbjct: 158 LREEKLRYRSVRRVAGSERMRVEMRNEEDKEAAERFLESRYPLNVYIDDSSNDNAFFATM 217

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                    +  + +++  I         A  + +       I     
Sbjct: 218 SELKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPG 265


>gi|194097898|ref|YP_002000943.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae
           NCCP11945]
 gi|260441154|ref|ZP_05794970.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae DGI2]
 gi|268594232|ref|ZP_06128399.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae 35/02]
 gi|291044482|ref|ZP_06570191.1| export protein SecD [Neisseria gonorrhoeae DGI2]
 gi|293397618|ref|ZP_06641824.1| preprotein translocase SecD subunit [Neisseria gonorrhoeae F62]
 gi|193933188|gb|ACF29012.1| protein export protein SecD [Neisseria gonorrhoeae NCCP11945]
 gi|268547621|gb|EEZ43039.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae 35/02]
 gi|291011376|gb|EFE03372.1| export protein SecD [Neisseria gonorrhoeae DGI2]
 gi|291611564|gb|EFF40633.1| preprotein translocase SecD subunit [Neisseria gonorrhoeae F62]
 gi|317163660|gb|ADV07201.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 618

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 105 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N +T+   D+   +    ++                    + +    I + 
Sbjct: 165 RSGTVRQAENSLTVPLQDAGDVQKALPQLLKLFPEA------------TLNSEGSNIVLA 212

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 213 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 272

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K             +            L+  +VE++G ++N A 
Sbjct: 273 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 332

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 333 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 391

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 392 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 451

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 452 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 511

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 512 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 571

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SM++++ + RA++      ++ 
Sbjct: 572 GILTSMYSSVVVFRALVNLWYGRRRK 597



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 394 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 454 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 513 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 570 CLGILTSMYSSVVVFRALVNLWYGRRRK 597



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 4   RYPLWKYLLIVFTIAVAAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK  GI    M  + N + + F D+  +    D +   L
Sbjct: 48  ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 96


>gi|288936874|ref|YP_003440933.1| protein-export membrane protein SecD [Klebsiella variicola At-22]
 gi|288891583|gb|ADC59901.1| protein-export membrane protein SecD [Klebsiella variicola At-22]
          Length = 604

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 172/539 (31%), Positives = 298/539 (55%), Gaps = 40/539 (7%)

Query: 13  MICCIG-LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
           ++  +G   +   N  P +    + +A+    + LGLDLRGG H ++EVD D  +    +
Sbjct: 80  LLTVLGDKYVVALNLAPATPR--WLAALYAEPMKLGLDLRGGVHFLMEVDMDTALGKLQE 137

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
              D LRS L+ +GI   ++R+  N  +++ F DS  ++              S L+   
Sbjct: 138 QNIDSLRSELRDKGIPYATVRKEDNYGLSIVFRDSAARDQAI-----------SYLSPRH 186

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           +  ++ +  +  +  V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+
Sbjct: 187 RDLVISSQGDNSLKAVMTDERLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIV 246

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVED 245
           ++LPG QD +R +++LG TA + F  V  N  +     G            +G   ++  
Sbjct: 247 VELPGIQDTARAKEILGATATLEFRLVNTNVDQSAAASGRVPGDSEVKETREGQPVVLYK 306

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV--- 302
           +V ++G H+  +T++   + ++P V+IS D  G       T+DNIGKP+A +        
Sbjct: 307 RVILTGDHITDSTSS-MDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSG 365

Query: 303 ---------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                          +      Q+      +I+G      A  L+ +LRAG+L   + IV
Sbjct: 366 KKDANGRAILAKEEEVINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIV 425

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER +G  LG  +I +G  A +AGLV+ +LFMI+ Y K+GL+A  ++  N++L + ++SL
Sbjct: 426 EERTIGPTLGMQNIKQGLEACLAGLVVSILFMILFYKKFGLIATSALIANLVLIVGIMSL 485

Query: 408 LG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           +  ATLT+P IAGIVL + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+
Sbjct: 486 IPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDA 545

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T LI  ++L+  G GA++GFAIT G+ I  SMFTAI   RA++  +   K++K + I
Sbjct: 546 NVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++ + +K  F L A + LI ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMILFYK-KFGLIATSALIANLVLIVGIMSLIP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    GI  +  ++I     I+  +Y  +    
Sbjct: 545 ANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKK 601


>gi|226939942|ref|YP_002795015.1| preprotein translocase subunit SecF [Laribacter hongkongensis
           HLHK9]
 gi|226714868|gb|ACO74006.1| SecF [Laribacter hongkongensis HLHK9]
          Length = 326

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 89/306 (29%), Positives = 158/306 (51%), Gaps = 3/306 (0%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                S +        I FM        IS+L  I ++  LF+ GLN  ++F GG  + V
Sbjct: 9   SNGQKSWWMKHILKHDIPFMSYGKLTTSISLLTFIAAVFFLFSKGLNLSVEFTGGTVMEV 68

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +   L  +R+++++L++G+ + Q      + L+RL           ++   V   + 
Sbjct: 69  QYAQTAPLEQIRTDIQTLKLGEPTVQALGTSHDVLIRLP--NIKDRTSAQLSNDVLAVLK 126

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
           +      ++  E VGP++  EL+  G+  + +  + +++Y+  RF+W FA+ AI   + D
Sbjct: 127 KDGHQVELRKVEFVGPQVGDELVTNGLTALAMVCLGIILYLAARFEWRFAVSAIIANLHD 186

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLID 762
           +   LG FALF  EF+LT +AA+L ++GYSVN+ VVV+DR+R+N +       +  ++I+
Sbjct: 187 VVIILGCFALFQWEFSLTVLAAILAVLGYSVNESVVVFDRIRENFRKPAMRGHTTAEIIN 246

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +I  T+ R+  T  +    VL M ++GG  +  FA+ +  GIV    SS+ +A+PI L 
Sbjct: 247 NAITATMSRTFITHGSTETMVLAMLLFGGPALHGFAMALTIGIVFGIYSSVLVASPIALA 306

Query: 823 IYDWRA 828
           +   R 
Sbjct: 307 LGVKRE 312


>gi|325498309|gb|EGC96168.1| preprotein translocase subunit SecD [Escherichia fergusonii ECD227]
          Length = 604

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 171/524 (32%), Positives = 295/524 (56%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+ +N  +T++F DS+ ++              S L+   +  ++ +  +  +  
Sbjct: 153 PYTTVRKDKNYALTITFRDSKARDEAI-----------SYLSPRHQDLVISSQGDNALRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLLVSILFMILFYKKFGLIATSALVANLILIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    +SV  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +  ++++ + +K  F L A + L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIEQGLEACLAGLLVSILFMILFYK-KFGLIATSALVANLILIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   S +  ID+           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYRGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601


>gi|293604955|ref|ZP_06687352.1| multidrug/solvent RND transporter TtgB [Achromobacter piechaudii
           ATCC 43553]
 gi|292816783|gb|EFF75867.1| multidrug/solvent RND transporter TtgB [Achromobacter piechaudii
           ATCC 43553]
          Length = 1059

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 72/687 (10%), Positives = 180/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L     Q  + ++P+  P            G  +      
Sbjct: 8   RPVFAWVIAIVLMMAGALSIL-----QLPVSQYPNIAPPAI---------GIAVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L              +  ITL+F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQMNGLDGLQYISSESNSDGSMSITLTFKQGTNPDTAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  ++++            + +  +     D I  ++   
Sbjct: 114 AQPLLPQEVQQQGIRVTKATKNFLIVAGFVSTDGTMTKDDLADYVASYVQDPISRTQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     TT  +       N        G            
Sbjct: 174 DFQLFGSQ-YAMRIWLDPAKLVNYGLTTVDVVAAIKEQNVQVSSGQLGGLPSVRGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +              K       +        +        I           
Sbjct: 233 TIIGPSRL-------------EKPEDFSRILLKVNADGSQVRLGDVSRIELGGQTYAIDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L+    P    +           S   
Sbjct: 280 FYNGKPASGLAIKLAPGANALDTAQAVRDTINNLKPYFPPGMDVVYPYDTTPFVSLSIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VFKTLVEAIILVFLVMYLFLQNFRATIIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  +   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLTPKQATRKSMGQITGALIGIAMVLAAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  S+++S+  AI    A+   +           +       +   
Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVLVAIVFTPALCATLLKPIPKGHHGSKRGFFGWFNRTF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   + +A    R +   +    L                  + +G +   +    
Sbjct: 520 ERSSNGYANTVARGLNRTKRLMIVYLALVIAMGWLFTRIPTAFLPAEDQGILFAQIQTPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  ++ ++      ++ +       F V      G     + +   ++        
Sbjct: 580 GATAEATKAVIDDATKYLLTEEKDAVTSVFAVNGFNFGGRGQNASILFIKLRDWEERGDA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
                           +  R+  + V+
Sbjct: 640 SLKAGAVAARANAHFAKTERRAQMFVV 666



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 84/238 (35%), Gaps = 7/238 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L        SF N        ++L            V + +        P   +
Sbjct: 264 DVSRIELGGQTYAIDSFYNGKPASGLAIKLAPGANALDTAQAVRDTINNLKPYFPPGMDV 323

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
                  P +S  +       ++ + I + + +++  + +   +     + + +  T G 
Sbjct: 324 VYPYDTTPFVSLSIHE-VFKTLVEAIILVFLVMYLFLQNFRATIIPTLAVPVVLLGTFGV 382

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            A FG   N   +  ++  IG  V+D +VV + +     +    ++ +    KS+ +  G
Sbjct: 383 LAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLTPKQATRKSMGQITG 440

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +  +M      +PMA +GGS       F+I +   +V++   +I     +   +  
Sbjct: 441 ALIGIAMVLAAVFIPMAFFGGSTGVIYRQFSITIVSSMVLSVLVAIVFTPALCATLLK 498



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 80/260 (30%), Gaps = 13/260 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V  S       S     ++  N     N   +         
Sbjct: 779  RMLPEDLNKWYVRNNAGDMVPFSAFSKATWSFGPQKLNRYNGVPSYNIQGQAAPGYSSGA 838

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +  K    +    T  + E              +  +  S I + + +   ++
Sbjct: 839  AMQEMERLAAKLPVGVGFEWTGLSFEERLSGSQAP----ALYAI--SLIVVFLCLAALYE 892

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L I   L      G+  ++     +LT +G +  + +++ +  ++  
Sbjct: 893  SWSIPTAVMLVVPLGIIGVLLATLARGLSNDVYFQVGLLTTVGLAAKNAILIVEFAKE-- 950

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
              + +  S  +    +  + L   + TS+A  + V P+A+    G     +    +  G+
Sbjct: 951  -HFESGASLTESAIHAARQRLRPILMTSLAFILGVTPLAISSGAGSGSQNAIGTGVIGGM 1009

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +     +IF      + +  
Sbjct: 1010 LTGTFLAIFFVPAFFVIMLR 1029


>gi|240047693|ref|YP_002961081.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma
           conjunctivae HRC/581]
 gi|239985265|emb|CAT05278.1| Protein-export membrane protein [Mycoplasma conjunctivae]
          Length = 862

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 161/868 (18%), Positives = 329/868 (37%), Gaps = 76/868 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R N W  I  ++     LL     F+    + +         I+  ++  GG+ ++++V 
Sbjct: 12  RLNTWKKIFVALFS-ASLLSIGIGFVANYYIAQ--------NINRSIEYGGGAEVLVQVK 62

Query: 61  --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM--RQIQNKITLSFADSRFKENIADKVT 116
             DE    N  ++     +   L        +    +   +I +S         + D + 
Sbjct: 63  TLDEKVPNNNIVKQADSAIFQRLTGGASLNGTSVFTEGGGRIRISRNKISDNRELNDFIN 122

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +            K LLV T      +         +     +++  ++    D    
Sbjct: 123 EIV-----------TKPLLVVTDTNNKPLFYDGVFNPNISLKDGDETNWLVPFAPDSA-- 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                              + DP++ +      +       L       ++    F ++ 
Sbjct: 170 -----------------VSQTDPNQPQANQVRISLKDKQAQLEWTKATEYVSKKPFGQNR 212

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 + + + ++         N     +  +      +               K    
Sbjct: 213 IRIWSNISELINLAKTKFPNEWQNSGENIYNFIHVGESVQP-TPLGQNRFLQPKLKEFQF 271

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +++   ++  +      ISGNF+ + A  LA  +  G    KL+ +    V    
Sbjct: 272 DAKKYLISEATVSSPLNGSSFVISGNFSSQEAKQLALNINYGIADYKLDFLSASFVSKSK 331

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
              +   G  AI   LV+I +FMIV YG  G+V+  S+ L V LTL   +++    +  +
Sbjct: 332 SDYAFLAGWIAIGISLVMIAIFMIVNYGVLGVVSTISLALYVFLTLLFFTIVRGEYSPIT 391

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           I+ +V+GIG+ VD+N++  E  + +    QSV  + +     +  TI DSN+T LIA +V
Sbjct: 392 ISALVIGIGMNVDANVISFEIFKNKVYSGQSVLKANNQANKLSLKTIIDSNVTTLIAALV 451

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKS 522
           LF+FG  +++GF+IT+  SI+ ++   ++  +  + FI              ++ K ++ 
Sbjct: 452 LFYFGTKSIKGFSITLIFSIIFTLIVTVAFTKFFVNFILKIPFLQTKPQLLGVKSKYIQK 511

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGI 579
                 S F         ++ +     +  + +    +    + +     N  IDF  G 
Sbjct: 512 YSRGYQSIFSKTDYFKIYKYSKWAPLIILGAAIIVFIAFAASYKNPASGLNLSIDFSSGT 571

Query: 580 QLGVLANRPVDL-------SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            L +  N              +   L +  +   + Q      N    L      + +  
Sbjct: 572 SLTISNNDQNFDLIDAKKGQKIIDYLNTQGLNSSNSQILLKPLNEQSSLYNIEVRTQSDI 631

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                           +    T  +  + +++L+   +V + I+ + + I+  +RFKW +
Sbjct: 632 TNQLRQITNNLTNNFSNLEITTYSISNEEAKKLVENAVVSIAIALLFVTIFTLLRFKWSY 691

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           +L  I +L+ +I        +  I+F+ TA+ A LTLIGY+VND +V++D+++   K   
Sbjct: 692 SLSIILSLLFNIAMIFLLMIIARIQFSPTAIIAFLTLIGYTVNDTIVIFDKIKNIFKEIP 751

Query: 753 TS-----ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +        R +  K+I + + RS+ TS+    +++ + ++  S+   F+I M  G+++
Sbjct: 752 HNDIYTPEKIRQVAHKAIKDAIKRSLLTSLTTLFTIIILLIFYQSIDIIFSITMLIGVLI 811

Query: 808 AASSSIFIAAPILLFIY--DWRAKNARI 833
            + SS+FIA  + +       R K  RI
Sbjct: 812 GSYSSLFIATNLWIRFEIIRNRRKQKRI 839


>gi|126174992|ref|YP_001051141.1| preprotein translocase subunit SecD [Shewanella baltica OS155]
 gi|153001321|ref|YP_001367002.1| preprotein translocase subunit SecD [Shewanella baltica OS185]
 gi|160875990|ref|YP_001555306.1| preprotein translocase subunit SecD [Shewanella baltica OS195]
 gi|125998197|gb|ABN62272.1| protein-export membrane protein SecD [Shewanella baltica OS155]
 gi|151365939|gb|ABS08939.1| protein-export membrane protein SecD [Shewanella baltica OS185]
 gi|160861512|gb|ABX50046.1| protein-export membrane protein SecD [Shewanella baltica OS195]
 gi|315268186|gb|ADT95039.1| protein-export membrane protein SecD [Shewanella baltica OS678]
          Length = 616

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 162/522 (31%), Positives = 277/522 (53%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + RS L++E I
Sbjct: 104 NLAPATPKWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D+    +    +    +        D          +  +  V
Sbjct: 164 RYAGIRSNTTGIEIKFRDAESLASAERFLKSRSK--------DMVFTDASRGEDFALQAV 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S   + Q+   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 MSDVYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V                G    +  +G   +++ +V ++G H+ GA  +F
Sbjct: 276 GATASIEFHMVDDKADPNAAQSGRLPAGSEVYQRREGGTVILKKEVMLTGDHITGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           D  + +P V I+ D  G   F +VT+DNIGKP+A +      +           +     
Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSDVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 394

Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                  A  LA +LRAG+L   ++IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIQNG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A+V G+ +++LFM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 VQAMVWGMAVVLLFMLVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFTAI   R+++  I   K++K++ I
Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI 616



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 94/241 (39%), Gaps = 6/241 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  R+   S+++  I            +   +              +  +   ++   +
Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     +GP +  E I+ G+  ++     +L+++ + ++  F L A   L  ++   +G 
Sbjct: 436 IVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYR-GFGLIANIALTANLVMVVGV 494

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +      
Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828
                 ++  F++ L +   G   +  FA+ +  GI  +  ++I     I+       R 
Sbjct: 552 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRV 611

Query: 829 K 829
           K
Sbjct: 612 K 612


>gi|296327896|ref|ZP_06870432.1| protein-export membrane protein SecF [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
 gi|296155030|gb|EFG95811.1| protein-export membrane protein SecF [Fusobacterium nucleatum
           subsp. nucleatum ATCC 23726]
          Length = 317

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 87/295 (29%), Positives = 148/295 (50%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +  ++     + IS++  I SI + FT GLNYGIDF GG    +  N         
Sbjct: 1   MKTNLHVIKNIKIYLSISLVLVIFSIVIFFTKGLNYGIDFSGGNLFQLKYNGTTVTLNQI 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +        ++   N +  K  +             +   +       + +   T+   +
Sbjct: 61  NENLDKLAKELPQINSNSRKVQISDDGTIIVRVPEISENDKGKVLNNLKELGSYTLDKED 120

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  I  +L +  I  + I AI ++IYI +RF++ FA+G I +L+ DI   +GF AL G
Sbjct: 121 KVGASIGDDLKKSAIYSLGIGAILIVIYITMRFEFSFAIGGILSLLHDIIIAVGFIALMG 180

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E +   +AA+LT++GYS+ND +V+YDR+R+N+K           +D+SIN+T  RS+ T
Sbjct: 181 YEVDTPFIAAILTILGYSINDTIVIYDRIRENLKRKHKGWILEQCMDESINQTAIRSLNT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           S+    SV+ + V+GG+ + +F + +  GI+    SSIF+A P++  +   +  N
Sbjct: 241 SVTTLFSVIAILVFGGASLKTFIMTLLIGILAGTYSSIFVATPVVYLLNKRKGNN 295


>gi|237654066|ref|YP_002890380.1| preprotein translocase subunit SecD [Thauera sp. MZ1T]
 gi|237625313|gb|ACR02003.1| protein-export membrane protein SecD [Thauera sp. MZ1T]
          Length = 621

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 180/517 (34%), Positives = 279/517 (53%), Gaps = 26/517 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL A P++L                + LGLDLRGG H +LEVD    +   L   
Sbjct: 106 VVALNLLSASPSWLTSIQA---------LPMYLGLDLRGGVHFLLEVDMPGALVKRLDST 156

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + +LR+ ++ + +    + +  N + + F D+  +E     +      +      D    
Sbjct: 157 TGDLRTLMRDKSVRHAGITREGNTVVIRFRDAAQREAGRRAIFDSTTDLQLVERDDA--- 213

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                 + ++   L+      +   AI+Q++  +  RI+++G++E  IQ+ G+ RI++QL
Sbjct: 214 ----ADDLKLVATLTPQAQQTMRDFAIKQNITTLHNRINELGVAEPVIQQQGAERIVVQL 269

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP------NNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           PG QD ++ + +LG TA +    V                FG     +  G+  LV+ +V
Sbjct: 270 PGVQDVAKAKDILGRTATLEVRMVDDTPGAIEQALAGSVPFGTELYNERGGSPLLVKKQV 329

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVL 303
            ++G  L  A   FD +T++P V ++ D  GAR F +VTR+++GK +         G V+
Sbjct: 330 VLTGDRLTDAQPGFDGQTNEPAVHLTLDAAGARIFRDVTRESVGKRMAILLFEKGKGEVV 389

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           TAPVI   I  G+ QISG  +   A  +A +LRAGSL   + I+EER VG  LG+++I K
Sbjct: 390 TAPVIRSEIGGGRVQISGRMSTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAENIQK 449

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  + + G + IV+FM   Y   GLV+  ++  N++L +ALLSLL ATLTLP IA + L 
Sbjct: 450 GFNSTLWGFLAIVVFMCGYYMLVGLVSSIALAANLLLLVALLSLLQATLTLPGIAAMALT 509

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+A+DSN+L+NERIREE R   S   ++  G+ RA+ TI DSNIT LIA + L  FG G
Sbjct: 510 LGMAIDSNVLINERIREELRNGASPQAAIAAGYDRAWDTILDSNITTLIAGIALLVFGSG 569

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            VRGFA+   L IL SMF+AI + R ++ FI   ++ 
Sbjct: 570 PVRGFAVVHCLGILTSMFSAILVSRMLINFIYGRRRK 606



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 86/208 (41%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     VGP +  E I+KG    +   +A++
Sbjct: 403 VQISGRMSTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAENIQKGFNSTLWGFLAIV 462

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++   +     L +   L  ++   +   +L      L  +AA+   +G +++  V++ 
Sbjct: 463 VFMCGYY-MLVGLVSSIALAANLLLLVALLSLLQATLTLPGIAAMALTLGMAIDSNVLIN 521

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      S +  I    +      + +++   I+ + + V+G   +  FA+  
Sbjct: 522 ERIREELR---NGASPQAAIAAGYDRAWDTILDSNITTLIAGIALLVFGSGPVRGFAVVH 578

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  S+I ++  ++ FIY  R K
Sbjct: 579 CLGILTSMFSAILVSRMLINFIYGRRRK 606



 Score = 44.7 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 32/121 (26%), Gaps = 26/121 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L  ++   GL+  LPNF  +                            ++V 
Sbjct: 3   RYPLWKNLLIGLVLLWGLIYTLPNFYGEVPA-------------------------VQVS 37

Query: 62  EDDFV-NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                        +D +   LK  GI    +      +   F D+  +    D +     
Sbjct: 38  SAKATLKLDTAATTDRIAGALKAAGIENTGIFSDATSVRARFKDTETQLRAKDVIEQTFN 97

Query: 121 G 121
            
Sbjct: 98  P 98


>gi|119476393|ref|ZP_01616744.1| protein-export membrane protein SecF [marine gamma proteobacterium
           HTCC2143]
 gi|119450257|gb|EAW31492.1| protein-export membrane protein SecF [marine gamma proteobacterium
           HTCC2143]
          Length = 296

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 96/289 (33%), Positives = 162/289 (56%), Gaps = 5/289 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM  R   + +S++  I SI  L   GLN+G+DF GG  + V  +    LS +R+ +E
Sbjct: 12  IPFMAGRKVAMILSLVLIIGSIASLALKGLNFGLDFTGGTLVEVGYSEVEPLSNIRNTIE 71

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           S    +    +F  E + LVRL     D + +    E+V     +      ++  E VGP
Sbjct: 72  SAGYKNAVVVHFGSETDILVRLPQGFSDELGE----ELVTALEKDFSGDIDLRRIEFVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  EL  +G + ++++   +++YI  RF+  F++GA++ L  D+  TLG F+ F I+F+
Sbjct: 128 QVGDELKEQGGLAMLMALGLVMLYITFRFQLKFSVGAVSALAHDVIITLGVFSFFQIDFD 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AAVL +IGYS+ND +VV DR+R+N +      +   +ID S+ ETL R++ TS   
Sbjct: 188 LTVLAAVLAVIGYSLNDTIVVSDRIRENFRKIRKG-TATSVIDISLTETLARTLVTSFTT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +  + ++GG +I  F+I +  G+ V   SSI++AA +LL +   + 
Sbjct: 247 LLVLTALFIFGGELIHGFSIALLVGVFVGTYSSIYVAANVLLVLNISKK 295


>gi|312970503|ref|ZP_07784684.1| protein-export membrane protein SecD [Escherichia coli 1827-70]
 gi|310337152|gb|EFQ02290.1| protein-export membrane protein SecD [Escherichia coli 1827-70]
 gi|323170490|gb|EFZ56140.1| protein-export membrane protein SecD [Escherichia coli LT-68]
 gi|323972258|gb|EGB67468.1| protein-export membrane protein SecD [Escherichia coli TA007]
 gi|332098544|gb|EGJ03510.1| protein-export membrane protein SecD [Shigella boydii 3594-74]
 gi|332760688|gb|EGJ90976.1| protein-export membrane protein SecD [Shigella flexneri 4343-70]
          Length = 549

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 38  NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 97

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 98  PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 146

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 147 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 206

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 207 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 266

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 267 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 325

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 326 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 385

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 386 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 445

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 446 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 505

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 506 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 549



 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++   +G  +L  
Sbjct: 374 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 432

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 433 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 489

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 490 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 546


>gi|149375022|ref|ZP_01892795.1| protein-export membrane protein SecD [Marinobacter algicola DG893]
 gi|149360911|gb|EDM49362.1| protein-export membrane protein SecD [Marinobacter algicola DG893]
          Length = 624

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 156/522 (29%), Positives = 274/522 (52%), Gaps = 37/522 (7%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
               P  +       + LGLDLRGG H +LEVD +  V+  L+  S +++  L++E +  
Sbjct: 107 APSTPEWLESVGAGPMKLGLDLRGGVHFLLEVDMETAVDQRLEAMSGQIKRELREERVRY 166

Query: 89  FSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
                  N+ I LSF D   +    D +                        E  + + +
Sbjct: 167 RGGDVEGNRSIVLSFRDESSRSEAFDLIRDQYNQFLLD--------EQTEEGEYLLVLSM 218

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           S+  +  +  +A+EQ++  IR R++++G++E  +QR G+ RI+++LPG QD +  +++LG
Sbjct: 219 SEAEVKSIQDYALEQNLTTIRNRVNELGVAEPLVQRQGADRIIVELPGVQDTAAAKRVLG 278

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
            TA + F                   RD+   +  +E +V ++G +++ A   FD    +
Sbjct: 279 ATANLEFRLEA-RQDASSADIETFPFRDNPNREARLEREVIVTGDNVSNAQQAFDENG-Q 336

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN------------------ 309
           P V+I+ D +G       TR+ IG+ +AV+          +                   
Sbjct: 337 PQVNITMDSVGGDLMNRATRNAIGRRMAVLFIEYRTETEEVVVDGETRTVDNRVVEKGII 396

Query: 310 -----QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                Q+      +I+G  +I  A  LA +LRAGSL   +  V+ER +G  LG  +I  G
Sbjct: 397 SLATIQSALGSSFRITGLDSIPEAAELALLLRAGSLAAPMYFVQERTIGPSLGQKNIDAG 456

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             +++ G VL++ +M+V Y  +G++A+ ++ LN++L +A +S+L ATLTLP IAGIVL +
Sbjct: 457 MMSVLLGFVLVLCYMVVYYRGFGVIANIALTLNLMLLIACMSILSATLTLPGIAGIVLTV 516

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+ ERI+EE +       +++ G+SRA+ +IFD+NIT L+  V+LF  G G 
Sbjct: 517 GMAVDANVLIFERIKEELKSGIPPQSAINAGYSRAFVSIFDANITTLLVAVILFAMGSGP 576

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           V+GFA+T+ + IL SMF+ + + R+++  +   ++++ + I 
Sbjct: 577 VKGFAVTLSIGILTSMFSGLMVSRSIVNLVYGGRQVEKLSIG 618



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 97/248 (39%), Gaps = 4/248 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +         +    +     ++ +    +    ++ L       G           +  
Sbjct: 368 IEYRTETEEVVVDGETRTVDNRVVEKGIISLATIQSALGSSFRITGLDSIPEAAELALLL 427

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           +   +           +GP + ++ I  G++ V++  + +L Y+ + ++  F + A   L
Sbjct: 428 RAGSLAAPMYFVQERTIGPSLGQKNIDAGMMSVLLGFVLVLCYMVVYYR-GFGVIANIAL 486

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L++   +   ++      L  +A ++  +G +V+  V++++R+++ +K   + I  +  
Sbjct: 487 TLNLMLLIACMSILSATLTLPGIAGIVLTVGMAVDANVLIFERIKEELK---SGIPPQSA 543

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I+   +         ++   +  + +   G   +  FA+ ++ GI+ +  S + ++  I+
Sbjct: 544 INAGYSRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLSIGILTSMFSGLMVSRSIV 603

Query: 821 LFIYDWRA 828
             +Y  R 
Sbjct: 604 NLVYGGRQ 611



 Score = 45.8 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 63/236 (26%), Gaps = 34/236 (14%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++  +   IG + ALPN  P                           +     
Sbjct: 4   KYPLWKNLVIVIALVIGFVYALPNVFPDDFA---------------------VQITGARS 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
             +     L    D L +  K   +    +++    I     D+  +      V   L +
Sbjct: 43  STEVDQRILDRAVDALEA--KGIEVKESELQERDALI--RLNDAESQLRARPIVQEALGR 98

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174
                LN+ P     + +       +            +  +  A++Q +E +  +I + 
Sbjct: 99  DYLVALNMAPSTPEWLESVGAGPMKLGLDLRGGVHFLLEVDMETAVDQRLEAMSGQIKRE 158

Query: 175 GISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
              E    R         I L    + SR         + +   +     +  ++ 
Sbjct: 159 LREERVRYRGGDVEGNRSIVLSFRDESSRSEAFDLIRDQYNQFLLDEQTEEGEYLL 214


>gi|28211809|ref|NP_782753.1| preprotein translocase subunit SecF [Clostridium tetani E88]
 gi|28204251|gb|AAO36690.1| protein translocase subunit secF [Clostridium tetani E88]
          Length = 291

 Score =  214 bits (544), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 86/284 (30%), Positives = 146/284 (51%), Gaps = 4/284 (1%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                 GIS+   +  +      GLNYGIDFKGG  + +  N+  D   V   L+     
Sbjct: 9   KTKIWFGISLAIMLLGLVFAIKDGLNYGIDFKGGTLVQIKMNKEFDKIEVEKILKKYTND 68

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
             + +  D + N  + ++           +   +K K         + + E +G  I +E
Sbjct: 69  YTTNEARDKDNNIQLEIRSNSLKDEQIKPMFNEIKNKYKLKDED--LLSQESIGASIGKE 126

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L +K I+ ++I+ IAMLIY+  RF++ F L AI  L+ DI  T+  +A+F I  N + +A
Sbjct: 127 LRQKAILSLVIANIAMLIYVGFRFEFKFGLSAILALVHDILITISIYAIFQIPINSSFIA 186

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           AVLT++GYS+ND +VV+DR+R+N K    +    ++ + SI +T+ RS+ TS+    ++ 
Sbjct: 187 AVLTIVGYSINDTIVVFDRIRENSKRNRKANEV-EIANISIAQTMTRSINTSLTTLFTIA 245

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + ++    +  FA+P+  G++  A SSIFIA+P+         
Sbjct: 246 AVYIF-VPSVREFALPLLIGVICGAYSSIFIASPLWTIFRKKGK 288


>gi|300310570|ref|YP_003774662.1| preprotein translocase subunit SecF protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073355|gb|ADJ62754.1| preprotein translocase subunit SecF protein [Herbaspirillum
           seropedicae SmR1]
          Length = 314

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 163/303 (53%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS L  + ++  LF+ GL++ I+F GG  + V  N+P D
Sbjct: 1   MEFFRIKKDIPFMRHALIFNAISALTFVAAVFFLFSKGLHFSIEFTGGTVMEVAYNKPAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R ++E L   D   Q+F   ++ ++RL  Q G + +Q    E V   +    P   
Sbjct: 61  LEKIRKSIEGLGYRDTLVQSFGTAQDVMIRLPAQAGVNASQQ--TEKVNAALKADDPDVR 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++  EL   G++ + +  + ++IY+  RF+W FA+ A+   + DI   LGF
Sbjct: 119 LQRVEFVGPQVGDELAHDGLLALGMVVLGIVIYLAFRFEWKFAVAAVIANLHDIIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDLIDKSINETL 769
           FA F  EF+LT +AA+L ++GYSVN+ VVV+DR+R+  +       S  ++++ +I  T+
Sbjct: 179 FAFFQWEFSLTVLAAILAVLGYSVNESVVVFDRVREAFRDRRFGKLSPPEVLNHAITSTM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R+V T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+AA + +++   R  
Sbjct: 239 SRTVITHGSTEMMVLAMFFFGGPTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKRED 298

Query: 830 NAR 832
             +
Sbjct: 299 LIK 301


>gi|26417545|gb|AAM75416.1| secretion protein SecF [Pseudomonas putida]
          Length = 314

 Score =  214 bits (544), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 161/287 (56%), Gaps = 5/287 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R     I++L ++ ++   +  GLN+G+DF GG  + +   RP DL  VR+
Sbjct: 13  MKTINFMGVRNVAFAITVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 72

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +    +   Q+F    + LVR+        ++                 +T++  E 
Sbjct: 73  ELVNSGFHEAVVQSFGATTDLLVRMPGDDPQLGSKVAEALQ----KAGGDNPATLKRVEF 128

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  TLG  + F I
Sbjct: 129 VGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQI 188

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     S  + I+ S  +TL R++ TS
Sbjct: 189 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINVSTTQTLLRTIATS 247

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++  +++  +  +GG  +  F++ +  G++    SSI+IA  +L+++
Sbjct: 248 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 294



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/170 (24%), Positives = 85/170 (50%), Gaps = 5/170 (2%)

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLL 408
             VG  +G +   +G   ++  L  I++++   +  K+ + A  S+  +V++TL +LS  
Sbjct: 127 EFVGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFF 186

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY---STIFD 465
             T  L  +A ++  IG +++  I+V +R+RE  R  +      ++  S       TI  
Sbjct: 187 QITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRKASLIENINVSTTQTLLRTIAT 246

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           S  T L    +LFF GG  + GF++ + + ++   +++I I   ++I++ 
Sbjct: 247 SVSTLLAIAALLFF-GGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWLN 295


>gi|332530977|ref|ZP_08406900.1| preprotein translocase subunit SecD [Hylemonella gracilis ATCC
           19624]
 gi|332039588|gb|EGI75991.1| preprotein translocase subunit SecD [Hylemonella gracilis ATCC
           19624]
          Length = 636

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 166/518 (32%), Positives = 277/518 (53%), Gaps = 16/518 (3%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD 75
                I   N +  +    + +++    + LGLDLRGG H +L+VD    +    +  + 
Sbjct: 104 AASGYIVALNLISNTP--AWLASLRAAPMYLGLDLRGGVHFMLQVDMQAALTKKAESLAG 161

Query: 76  ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL 135
           +LR+ L+++ I    + +  N I +    +      A       + V      D +    
Sbjct: 162 DLRTTLREKNIRHGGIARNGNTIEIRLRGTG---ADAAATAEATRRVLLDQFADLQLAES 218

Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195
               + ++++ L    +  V   A++Q++  +  RI+++G++E  IQ+ G+ RI++QLPG
Sbjct: 219 NDGGDLKLTLSLKPAAMRLVQDQALKQNITTLHNRINELGVAEPVIQQQGADRIVVQLPG 278

Query: 196 EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-------SDGNQYLVEDKVE 248
            QD ++ + +LG TA +    V  +   +    G   +          +G   +V  +V 
Sbjct: 279 VQDTAKAKDILGRTATLELRMVDESTEGRAAELGTGPVPFTSERYLERNGQAVIVRKQVV 338

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLT 304
           ++G +L  A   FD +TH+P V++  D  GAR F +VTR+NIGK +         G V+T
Sbjct: 339 LTGENLTDAQPGFDSQTHEPTVNLVLDAKGARIFKDVTRENIGKRMAIILFEKGQGEVVT 398

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           APVI   I  G+ QISG  +   A   A +LRAGSL   + I+EER +G  LG+D+I KG
Sbjct: 399 APVIRGEIGGGRVQISGRMSTTEAADTALLLRAGSLAAPMEIIEERTIGPSLGADNISKG 458

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             ++  G V +  FM + Y  +G+ +  ++ +N++L +A+LS+L ATLTLP +A + L +
Sbjct: 459 FHSVTWGFVAVAAFMGIYYMLFGVFSAVALAVNLLLLVAVLSMLQATLTLPGMAAMALVL 518

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+A+D+N+L+NER+REE R   S   ++  G+ RA++TI DSN+T LIA + L  FG G 
Sbjct: 519 GMAIDANVLINERVREELRNGASPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGTGP 578

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           VRGFA+   L I+ SMF+A+   R ++      +K   
Sbjct: 579 VRGFAVVHCLGIVTSMFSAVFFSRGLVNLWYGSRKKLK 616



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 84/212 (39%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I KG   V    +A+ 
Sbjct: 411 VQISGRMSTTEAADTALLLRAGSLAAPMEIIEERTIGPSLGADNISKGFHSVTWGFVAVA 470

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ I +   F + +   L +++   +   ++      L  +AA+  ++G +++  V++ 
Sbjct: 471 AFMGIYY-MLFGVFSAVALAVNLLLLVAVLSMLQATLTLPGMAAMALVLGMAIDANVLIN 529

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      S +  I           + +++   I+ L +  +G   +  FA+  
Sbjct: 530 ERVREELR---NGASPQAAIHAGYERAWATILDSNVTTLIAGLALLAFGTGPVRGFAVVH 586

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GIV +  S++F +  ++   Y  R K   +
Sbjct: 587 CLGIVTSMFSAVFFSRGLVNLWYGSRKKLKSV 618



 Score = 42.0 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
          R   W   +  +   +G +   PNF  ++   +   A    ++ LG          ++  
Sbjct: 3  RYPLWKYAIIVIALLVGAIYTAPNFFGEAPAVQVSPARATQKVDLG----------VQAR 52

Query: 62 EDDFVNG 68
           +D +  
Sbjct: 53 VEDALKQ 59


>gi|304411828|ref|ZP_07393439.1| protein-export membrane protein SecD [Shewanella baltica OS183]
 gi|307303404|ref|ZP_07583159.1| protein-export membrane protein SecD [Shewanella baltica BA175]
 gi|304349688|gb|EFM14095.1| protein-export membrane protein SecD [Shewanella baltica OS183]
 gi|306913764|gb|EFN44186.1| protein-export membrane protein SecD [Shewanella baltica BA175]
          Length = 605

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 162/522 (31%), Positives = 277/522 (53%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + RS L++E I
Sbjct: 93  NLAPATPKWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKI 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D+    +    +    +        D          +  +  V
Sbjct: 153 RYAGIRTNTTGIEIKFRDAESLASAERFLKSRSK--------DMVFTDASRGEDFALQAV 204

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S   + Q+   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 205 MSDVYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 264

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V                G    +  +G   +++ +V ++G H+ GA  +F
Sbjct: 265 GATASIEFHMVDDKADPNAAQSGRLPAGSEVYQRREGGTVILKKEVMLTGDHITGAQPSF 324

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           D  + +P V I+ D  G   F +VT+DNIGKP+A +      +           +     
Sbjct: 325 DQYS-RPQVSINLDAKGGTIFSDVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEV 383

Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                  A  LA +LRAG+L   ++IVEER +G  LG+++I  G
Sbjct: 384 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIQNG 443

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A+V G+ +++LFM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 444 VQAMVWGMAVVLLFMLVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 503

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 504 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTG 563

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFTAI   R+++  I   K++K++ I
Sbjct: 564 AVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKTLSI 605



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 94/241 (39%), Gaps = 6/241 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  R+   S+++  I            +   +              +  +   ++   +
Sbjct: 365 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 424

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     +GP +  E I+ G+  ++     +L+++ + ++  F L A   L  ++   +G 
Sbjct: 425 IVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYR-GFGLIANIALTANLVMVVGV 483

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +      
Sbjct: 484 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 540

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828
                 ++  F++ L +   G   +  FA+ +  GI  +  ++I     I+       R 
Sbjct: 541 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRV 600

Query: 829 K 829
           K
Sbjct: 601 K 601


>gi|167623487|ref|YP_001673781.1| preprotein translocase subunit SecD [Shewanella halifaxensis
           HAW-EB4]
 gi|167353509|gb|ABZ76122.1| protein-export membrane protein SecD [Shewanella halifaxensis
           HAW-EB4]
          Length = 616

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 158/522 (30%), Positives = 269/522 (51%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + R+ L+ E I
Sbjct: 104 NLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEALRKMSEAKVADFRTDLRAEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D+       + +             D          +  +   
Sbjct: 164 RYAGIRNGAKGIEIKFRDAETLTKAENFLKSRSN--------DMVFVDKTVGDDYVLVAN 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            S+  + QV   A++Q++  +R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 PSEAYLKQVKEEALQQNITTLRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
             TA + FH V      +         G    +   G   +++  V ++G H+ GA  +F
Sbjct: 276 SATASIEFHMVDQKADVQAAMSGRVPAGSELYQRRTGGPVVLKKAVMLTGDHIQGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA---------------- 305
           D  + +P V I+ D  G   F  VT+DNIG P+A +      T                 
Sbjct: 336 DEYS-RPQVSINLDAKGGSIFSNVTKDNIGNPMATLFIEYKDTGEKNADGSVKMKKIEEV 394

Query: 306 -PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
             V       G+  +        A  LA +LRAG+L   + IVEER +G  LG ++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEERTIGPSLGQENIENG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+ ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 MQAMIWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFT I   R+++  I   K++K + I
Sbjct: 575 AVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKKLSI 616



 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 91/238 (38%), Gaps = 6/238 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++   S+++  I            +   +              +  +   ++    I   
Sbjct: 380 KNADGSVKMKKIEEVISVATIQARLGRNFVITGLEHAEAQNLALLLRAGALIAPVYIVEE 439

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +GP + +E I  G+  +I     +LI++ + ++  F L A   L  ++   +G  ++ 
Sbjct: 440 RTIGPSLGQENIENGMQAMIWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGVMSMI 498

Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +          
Sbjct: 499 PGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHEGYGNAFSTIA 555

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
             ++  F++ L +   G   +  FA+ +  GI  +  + I     I+       R K 
Sbjct: 556 DANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTCIVGTRSIVNAIWGGKRVKK 613



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 36/118 (30%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++  +I  IG   A+PN   +    +                      V+   
Sbjct: 4   KYPMWKNLMVIVIIAIGGFYAIPNLFGEDHAVQ----------------------VVATR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             +     L   ++ L+S    +GI V        ++ +   +   +    + ++  L
Sbjct: 42  GAEVSASTLSTVNEVLKS----KGIAVKRSELENGQLLVRLNNGEEQLVAKEIISDAL 95


>gi|123443371|ref|YP_001007345.1| preprotein translocase subunit SecD [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090332|emb|CAL13198.1| protein-export membrane protein SecD [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 615

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 164/537 (30%), Positives = 291/537 (54%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P++L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 100 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LRS L+++ I   ++R++ N  + + F D + +++             S L+   + 
Sbjct: 151 MDTLRSDLREKNIPYATVRKLDNYGVEVRFRDDKTRDDAI-----------SYLSPRHRD 199

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ +     +  V+S + + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 200 LVIGSNGSNTLKAVMSDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNSNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 319

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 320 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKK 378

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 379 DANGRAVLVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 438

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM+V Y K+G++A  ++  N++L + ++SLL 
Sbjct: 439 RTIGPTLGSQNITQGLEACLWGLAVSILFMVVYYRKFGVIASTALLANLVLIVGVMSLLP 498

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE +  +++  ++  G+  A+S+I D+N+
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYKNGRTIQQAIHEGYKGAFSSIVDANV 558

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 559 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 615



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 440 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YKNGRTIQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 556 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 612



 Score = 39.7 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 29/114 (25%), Gaps = 26/114 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  +GLL ALPN   +                          +     
Sbjct: 4   RYPLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                   L    D L      + I   S+      I   F D   +    + +
Sbjct: 42  GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREAL 91


>gi|167470051|ref|ZP_02334755.1| protein-export membrane protein SecD [Yersinia pestis FV-1]
          Length = 657

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 163/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P++L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 142 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 192

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LR+ L+++ I   ++R++ N  + + F D + + +    ++   +            
Sbjct: 193 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 241

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +  +     +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 242 LVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 301

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 302 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 361

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 362 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKK 420

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 421 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 480

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM+V Y K+G++A  ++  N++L + ++SLL 
Sbjct: 481 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 540

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+NI
Sbjct: 541 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 600

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 601 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 657



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 482 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 540

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 541 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 597

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 598 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 654



 Score = 39.3 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R + W  ++  ++  +GLL ALPN   +                          +     
Sbjct: 46  RYSLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 83

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                   L    D L      + I   S+      I   F D   +    + +   L
Sbjct: 84  GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREALVEAL 137


>gi|238765178|ref|ZP_04626110.1| Protein-export membrane protein secD [Yersinia kristensenii ATCC
           33638]
 gi|238696612|gb|EEP89397.1| Protein-export membrane protein secD [Yersinia kristensenii ATCC
           33638]
          Length = 600

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 162/524 (30%), Positives = 286/524 (54%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    PS + K     + LGLDLRGG H ++EVD D  +    +   D LRS L+++ I
Sbjct: 89  NLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRSDLREKNI 148

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R++ N  + + F D + +++    ++   +             ++ +     +  
Sbjct: 149 PYATVRKLDNYGVEVRFRDDKTRDDAISYLSSRHR-----------DLVIGSNGSNTLKA 197

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S + + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++
Sbjct: 198 VMSDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 257

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N        G            +G   ++  +V ++G H+  +T++
Sbjct: 258 LGATATLEFRLVNSNVDATVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSS 317

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
            D    +  V+IS D  G       T+DNIGKP+A +                       
Sbjct: 318 TDEYN-QAQVNISLDSAGGAVMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 376

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LGS +I 
Sbjct: 377 VINIANIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIT 436

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GL + +LFM+V Y K+G++A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 437 QGLEACLWGLAVSILFMVVYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 496

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+N+T LI  ++L+  G
Sbjct: 497 LTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVG 556

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 557 TGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINKLSI 600



 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 425 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 483

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 484 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 540

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G++ +  ++I     I+  +Y  +  N 
Sbjct: 541 ANVTTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINK 597


>gi|238783638|ref|ZP_04627659.1| Protein-export membrane protein secD [Yersinia bercovieri ATCC
           43970]
 gi|238715516|gb|EEQ07507.1| Protein-export membrane protein secD [Yersinia bercovieri ATCC
           43970]
          Length = 604

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 160/537 (29%), Positives = 290/537 (54%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P++L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 89  VIALNLAPATPSWLARLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LR+ L+++ I   ++R++ N  + + F D + +++    ++   +            
Sbjct: 140 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKTRDDAISYLSSRHR-----------D 188

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ +     +  V++ + + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 189 LVIGSNGSNTLKAVMTDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 248

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDASVAATGRVPGDSEVKNTREGRPVVLYKRV 308

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 309 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSLMSNFTKDNIGKPMATLFVEYKDSGKK 367

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 368 DANGRAILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 427

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM++ Y K+G++A  ++  N++L + ++SLL 
Sbjct: 428 RTIGPTLGSQNITQGLEACLWGLAVSILFMVIYYRKFGVIASTALLANLVLIVGVMSLLP 487

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+N+
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANV 547

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ I ++  F + A T L+ ++   +G  +L  
Sbjct: 429 TIGPTLGSQNITQGLEACLWGLAVSILFMVIYYR-KFGVIASTALLANLVLIVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G++ +  ++I     I+  +Y  +  N 
Sbjct: 545 ANVTTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|253990961|ref|YP_003042317.1| preprotein translocase subunit SecF [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782411|emb|CAQ85575.1| Protein-export membrane protein SecF [Photorhabdus asymbiotica]
          Length = 322

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 169/301 (56%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR      GIS+L  + S+ ++ T G N+G+DF GG  + +  ++
Sbjct: 5   YTVEQLNYGRKVYDFMRWDNVAFGISLLLLVASVFVMATRGFNWGLDFTGGTVIEIKLSK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R NL      D   QNF   ++ +VR+    G +  +    +++K     +  
Sbjct: 65  PADLDKMRDNLAKAGFKDPLLQNFGSSRDVMVRMPPVTG-AANEELSKKVIKVINDTVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +++   EIVGP +  EL + G + ++ + I +LIY+  RF+W  ALGA+  L  D+  T
Sbjct: 124 DASVNRVEIVGPSVGAELAQNGAMALLAALICILIYVGFRFEWRLALGAVLALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +      S+ ++++ S+ +
Sbjct: 184 LGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLLVVLMLYIFGGAMLKGFSLAMLIGVSIGTISSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|240127576|ref|ZP_04740237.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685960|ref|ZP_06152822.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268626244|gb|EEZ58644.1| preprotein translocase subunit SecD [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 617

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 166/506 (32%), Positives = 278/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++E I
Sbjct: 104 NLLADSPEWMAKIKANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N +T+   D+   +    ++                    + +    I + 
Sbjct: 164 RSGTVRQAENSLTVPLQDAGDVQKALPQLLKLFPEA------------TLNSEGSNIVLA 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +++V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEEAVNKVRSDAVKQNITTLHNRVNELGVAEPIIQQSGLDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--------GNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K             +            L+  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPAKLREALEGNVPSGYELLSSGGEHPETLLISKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD     P V +S D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDQMG-APAVSLSLDSAGGSIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRTAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ +ISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAI 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +  FM+V Y   G  +  ++  N++  + +LS + ATLTLP +A + L +G+A+DSN+L+
Sbjct: 451 VAAFMVVYYRLMGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++GF  A++TI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            ILISM++++ + RA++      ++ 
Sbjct: 571 GILISMYSSVVVFRALVNLWYGRRRK 596



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 393 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 453 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+++  SS+ +   ++   Y  R K
Sbjct: 569 CLGILISMYSSVVVFRALVNLWYGRRRK 596



 Score = 38.5 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L      +  + +LPN   ++   +  +      I+                
Sbjct: 3   RYPLWKYLLIVFTIAVVAVYSLPNLFGETPAVQVSTNRQAIIIN---------------- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++ + LK  GI    M  + N + + F D+  +    D +   L
Sbjct: 47  ---------EQTQSKVDAALKNAGIQTDGMFVVDNSLKVRFKDTETQLKARDVIENTL 95


>gi|157164195|ref|YP_001467049.1| preprotein translocase subunit SecF [Campylobacter concisus 13826]
 gi|112800443|gb|EAT97787.1| protein-export membrane protein SecF [Campylobacter concisus 13826]
          Length = 323

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 100/285 (35%), Positives = 163/285 (57%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR RF  +  SI   + SI LL T GLNYGIDF GG  + +  +    L  +R    
Sbjct: 10  YDFMRFRFVSLAFSIFLFVGSIFLLATKGLNYGIDFSGGTLIQLKYDTKAPLDKIRDAFG 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           + ++   +     G ++  V      G S   T  +    K+I +      ++  +IVGP
Sbjct: 70  TNEVLKNASVTEFGSEDEAVIRFS--GSSSNLTGDIGTEIKQILKDTGNFEVRRVDIVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL +KG++ + IS I +L+YI  RF+W FAL AI T I DI  T+G  +LF I+ N
Sbjct: 128 KVGDELRQKGLMALGISLIGVLLYITFRFEWRFALAAIATEIHDIVITVGAISLFDIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVLT++GYS+ND ++++DR+R+ +K  +       +I++S++ TL R++ TS   
Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKE-SKRTDIEGVINESVSATLSRTILTSATT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            ++V+ + ++GG +I  F+  +  GIV+   SSI+I++P L++  
Sbjct: 247 MMTVVVLFLFGGDMIHGFSFILIVGIVIGTISSIYISSPFLIWFK 291


>gi|118497684|ref|YP_898734.1| preprotein translocase subunit SecF [Francisella tularensis subsp.
           novicida U112]
 gi|194323656|ref|ZP_03057432.1| protein-export membrane protein SecF [Francisella tularensis subsp.
           novicida FTE]
 gi|208779748|ref|ZP_03247092.1| protein-export membrane protein SecF [Francisella novicida FTG]
 gi|118423590|gb|ABK89980.1| preprotein translocase, subunit F, membrane protein [Francisella
           novicida U112]
 gi|194322020|gb|EDX19502.1| protein-export membrane protein SecF [Francisella tularensis subsp.
           novicida FTE]
 gi|208744203|gb|EDZ90503.1| protein-export membrane protein SecF [Francisella novicida FTG]
          Length = 314

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 159/300 (53%), Gaps = 3/300 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                   +I F+  + +    S+L  + S+  +FT GLN G+DF GG Q+ +  +    
Sbjct: 1   MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648
            S   +   +    + +     G+ N  +        +     + +  +    ++     
Sbjct: 61  DSETMAKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVENSLD 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           + +Q+   +GP++ +EL   G++ +I++ + +LIYI  RF+  F + A   L+ D    L
Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N +    + S  +++++SIN+T
Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNRSINDT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS    + V+ + ++GGS + +F++ +  GIVV   SSI++A  + + +   R 
Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 299


>gi|326404385|ref|YP_004284467.1| protein-export membrane protein SecD [Acidiphilium multivorum
           AIU301]
 gi|325051247|dbj|BAJ81585.1| protein-export membrane protein SecD [Acidiphilium multivorum
           AIU301]
          Length = 526

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 186/526 (35%), Positives = 307/526 (58%), Gaps = 13/526 (2%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
                L  + C IG+L+ LPN + + +       +P  +I LGLDLRGGS+L++++D + 
Sbjct: 6   RLKTTLIVLFCAIGVLLTLPNLIKRPVPG-----IPWPQIHLGLDLRGGSYLLMQIDMNA 60

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE--NIADKVTLFLQGV 122
            V   L   +DE+R  L +  IG   +        + F   +  E   +   +   +  V
Sbjct: 61  VVKEQLANLTDEVRHALLQADIGYTDLGGDVAARRVQFNLVKPGEAPKVRQILAKLVSPV 120

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            +          +  +     ++ LS+  +    + AI QS+ II +RID  G+ +  I 
Sbjct: 121 AAA--GGAPDLDVKVSDAGAATLTLSRPALIAKQTQAIAQSITIIGRRIDGSGVVDPQIA 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL----PNNSKKGFMFGVRFLRDSDG 238
           R G+ +I+IQLPG  DP+++++LLG TA M+FH V     P          +  + D  G
Sbjct: 179 RQGADQIVIQLPGVSDPNQIKKLLGKTAHMTFHMVAEDVNPETKTPPPGVEILPMSDGSG 238

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            +  +  +V + G  L  A A  DP++ + VV+ +F+ +GAR+F ++T  N+GK  A+ L
Sbjct: 239 RKLAIRSRVAVDGADLTNAQAGQDPQSGQWVVNFTFNSVGARKFADITTHNVGKLFAIEL 298

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D +++ APVI   I  G+ QISG+FT ++A  LA +LRAG+LP  L +VE+++VG +LG+
Sbjct: 299 DRKIIEAPVIRTPIVGGRGQISGSFTAKSASDLALLLRAGALPAPLKVVEQQSVGPELGA 358

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           D+I  G  ++  G VL++ FM   YG +G  A+ ++ +N++L +A+LSL+GATLTLP +A
Sbjct: 359 DAIRAGIVSLAVGFVLVITFMASFYGLFGWFANIALVVNLLLLIAVLSLMGATLTLPGMA 418

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GI+L +G+AVDSN+L+NER+REE +  +    +L+ G+ RAY TI DSN+T L+A ++LF
Sbjct: 419 GILLTLGMAVDSNVLINERVREEVKLGRKPLAALEAGYKRAYGTIIDSNVTTLLAHIMLF 478

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            FG   VRGFA+T+ + I+ ++FT+  +VR +       ++  ++ 
Sbjct: 479 IFGSPPVRGFAVTICVGIITTLFTSTVLVRLITARWYVARRPAALP 524



 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 80/176 (45%), Gaps = 4/176 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
            + VGP++  + IR GIV + +  + ++ ++   +   F   A   L++++   +   +L
Sbjct: 349 QQSVGPELGADAIRAGIVSLAVGFVLVITFMASFYGL-FGWFANIALVVNLLLLIAVLSL 407

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    L  +A +L  +G +V+  V++ +R+R+ +KL          ++       G  +
Sbjct: 408 MGATLTLPGMAGILLTLGMAVDSNVLINERVREEVKLGRK---PLAALEAGYKRAYGTII 464

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +++   ++ + + ++G   +  FA+ +  GI+    +S  +   I    Y  R  
Sbjct: 465 DSNVTTLLAHIMLFIFGSPPVRGFAVTICVGIITTLFTSTVLVRLITARWYVARRP 520


>gi|238791404|ref|ZP_04635042.1| Protein-export membrane protein secD [Yersinia intermedia ATCC
           29909]
 gi|238729020|gb|EEQ20536.1| Protein-export membrane protein secD [Yersinia intermedia ATCC
           29909]
          Length = 615

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 159/524 (30%), Positives = 286/524 (54%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    PS + K     + LGLDLRGG H ++EVD D  +    +   D LR+ L+++ I
Sbjct: 104 NLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R++ N  + + F D + +++    ++   +             ++ +     +  
Sbjct: 164 PYATVRKLDNYGVEVRFRDDKTRDDAVSYLSSRHR-----------DLVIGSNGSNTLKA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++ + + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++
Sbjct: 213 VMTDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N        G            +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNSNVDASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D    +  V+IS D  G       T+DNIGKP+A +      +                
Sbjct: 333 TDEYN-QAQVNISLDSAGGSLMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 391

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LGS +I 
Sbjct: 392 VINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIT 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GL + +LFM++ Y K+G++A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 452 QGLEACLWGLAVSILFMVIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+N+T LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEEFRNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 572 TGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINKLSI 615



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ I ++  F + A T L+ ++   +G  +L  
Sbjct: 440 TIGPTLGSQNITQGLEACLWGLAVSILFMVIYYR-KFGVIASTALLANLVLIVGVMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++  +      + +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEFR---NGRTIQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G++ +  ++I     I+  +Y  +  N 
Sbjct: 556 ANVTTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINK 612



 Score = 40.1 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 29/114 (25%), Gaps = 26/114 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  IGLL ALPN   +                          +     
Sbjct: 4   RYPLWKYLMLIVVIFIGLLYALPNLYGEDPA---------------------VQIT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                   L    D L      + I   S+      I   F D   +    + +
Sbjct: 42  GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFKDPDVQLRAREAL 91


>gi|283479340|emb|CAY75256.1| Protein-export membrane protein secF [Erwinia pyrifoliae DSM 12163]
          Length = 337

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            S   +        FMR       IS +  I ++ ++   G N+G+DF GG  + +   +
Sbjct: 20  HSVEQMNHGRKVYDFMRWDKLAFIISGILLIVAVAIIGVRGFNWGLDFTGGTVIEINLEQ 79

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL ++R +L+     +   QNF   ++ +VR+    G+   +    +++         
Sbjct: 80  PADLDMMRGSLQKAGFAEPQVQNFGSSRDVMVRMAPAEGN-AGEALGSKVLGIVNEATGQ 138

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+L YI  RF+W  ALG +  L  D+  T
Sbjct: 139 NATVKRIEFVGPSVGSDLAQAGGMALLSALIAILFYIGFRFEWRLALGTVLALAHDVVIT 198

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+NDK+VV DR+R+N +      S+ D+ + S+ +
Sbjct: 199 MGLLSLFQIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 257

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS+     VL + ++GG+++  F++ M  GI +   SSI++++ + L +   R
Sbjct: 258 TLSRTIITSVTTLAMVLILFIFGGALLQGFSLTMLIGITIGTISSIYVSSALALKLGMKR 317

Query: 828 A 828
            
Sbjct: 318 E 318


>gi|333010850|gb|EGK30276.1| protein-export membrane protein SecD [Shigella flexneri K-272]
 gi|333021349|gb|EGK40602.1| protein-export membrane protein SecD [Shigella flexneri K-227]
          Length = 549

 Score =  214 bits (543), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 170/537 (31%), Positives = 296/537 (55%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 34  VVALNLAPATPCWLAAIHAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQN 84

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LRS L+++GI   ++R+  N  ++++F D++ ++     ++                
Sbjct: 85  IDSLRSDLREKGIPYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPD 133

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ +    ++  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++
Sbjct: 134 LVISSQGSNQLRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVE 193

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N  +     G         +  +G   ++  +V
Sbjct: 194 LPGIQDTARAKEILGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRV 253

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302
            ++G H+  +T++   + ++P V+IS D  G       T+DNIGKP+A +          
Sbjct: 254 ILTGDHITDSTSS-QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKK 312

Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                        +      Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 313 DANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEE 372

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG  +I +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL 
Sbjct: 373 RTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLP 432

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATL++P IAGIVL + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NI
Sbjct: 433 GATLSMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANI 492

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 493 TTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 549



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++   +G  +L  
Sbjct: 374 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 432

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 433 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 489

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 490 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 546


>gi|237747211|ref|ZP_04577691.1| preprotein translocase SecD subunit [Oxalobacter formigenes HOxBLS]
 gi|229378562|gb|EEO28653.1| preprotein translocase SecD subunit [Oxalobacter formigenes HOxBLS]
          Length = 623

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 159/511 (31%), Positives = 279/511 (54%), Gaps = 21/511 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N LP +   ++  ++    + LGLDLRGG H +++VD +  +N  +Q      R+
Sbjct: 108 FSIAFNLLPNTP--QWLQSLHALPMYLGLDLRGGVHFLMQVDVEAAINSRIQGLQISARN 165

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++  I    + + ++ + + F D + ++     +   +  +  +            T 
Sbjct: 166 LLRENNIRYSGLVRARDSVEMQFNDPQTRQRAEKVLKSQMSDITVR----------EETG 215

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             ++ + LS   I QV  ++++Q++  + +R++++G++E  IQ+ G+ RI++QLPG QD 
Sbjct: 216 SDKLILTLSPEAIKQVKENSVKQNIATLSKRVNELGVNEPVIQQQGADRIVVQLPGVQDV 275

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKK-----GFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           SR + ++G TA +    V  + ++          G    R   G   ++  +  ++G ++
Sbjct: 276 SRAKDIIGRTATLEVRMVDESITRGTEESVAVPLGSELFRQGKGTPVILYKEPVLTGEYI 335

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQA 311
           + A+A+FD    +P V I  +  G R+  + TR  IGK +A+VL  +    +      + 
Sbjct: 336 SNASASFDQYQ-QPAVSIDLNGDGGRKMRQATRGKIGKLMAIVLFEKGKGEVLTVASIRD 394

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
               K QI+G  T E A  LA +LRAGSL   ++I+EER +G  LG+++I KG  + + G
Sbjct: 395 ELGSKFQITGMDTPEAATDLALLLRAGSLAAPMHIIEERTIGPQLGAENITKGFFSTLYG 454

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
            V + +FMI+ Y  +G  +  ++ +NV+L +A+LSL+  TLTLP IA I L +G+A+DSN
Sbjct: 455 FVAVSIFMILYYLVFGFFSVIALSVNVLLLIAILSLMQVTLTLPGIAAIALALGMAIDSN 514

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+NERIREE R N S   ++  GF  A++TI DSN+T LIA + L  FG G VRGFA+ 
Sbjct: 515 VLINERIREELRANSSPQSAIANGFGHAWATILDSNVTTLIAGLALLIFGSGPVRGFAVV 574

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             + I+ S+F+++ + R +       +K  +
Sbjct: 575 HVIGIMTSLFSSVFVSRGLANLWYGRRKKLT 605



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 88/205 (42%), Gaps = 4/205 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    +      +  +   +     I     +GP++  E I KG    +   +A+ I++
Sbjct: 403 TGMDTPEAATDLALLLRAGSLAAPMHIIEERTIGPQLGAENITKGFFSTLYGFVAVSIFM 462

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + +   F   ++  L +++   +   +L  +   L  +AA+   +G +++  V++ +R+
Sbjct: 463 ILYY-LVFGFFSVIALSVNVLLLIAILSLMQVTLTLPGIAAIALALGMAIDSNVLINERI 521

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++  +   S +  I           + +++   I+ L + ++G   +  FA+    G
Sbjct: 522 REELRANS---SPQSAIANGFGHAWATILDSNVTTLIAGLALLIFGSGPVRGFAVVHVIG 578

Query: 805 IVVAASSSIFIAAPILLFIYDWRAK 829
           I+ +  SS+F++  +    Y  R K
Sbjct: 579 IMTSLFSSVFVSRGLANLWYGRRKK 603



 Score = 44.7 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 31/119 (26%), Gaps = 21/119 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L       G++  LPNF  +S   +  S     +I                 
Sbjct: 3   RYPLWKYLLIVAAILFGIIYTLPNFFGESPAVQISSIRSTVKI----------------- 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                   +      L+          F    + + + + F  +  +    + +   L 
Sbjct: 46  ----DTQMMNQVEQILKDNNVPVDGIYFDASGMHSTVKVRFTTTDTQFRAKEILESKLN 100


>gi|156973361|ref|YP_001444268.1| preprotein translocase subunit SecD [Vibrio harveyi ATCC BAA-1116]
 gi|156524955|gb|ABU70041.1| hypothetical protein VIBHAR_01048 [Vibrio harveyi ATCC BAA-1116]
          Length = 607

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 153/524 (29%), Positives = 272/524 (51%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +   +    +  RS L++  I
Sbjct: 93  NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 152

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   +          +           + D       +     +  
Sbjct: 153 RYRAIRPSGTEGVEVLLRNEEQLAEAKATLEKN--------HPDMNFVDSDSNGRYALIA 204

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 205 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264

Query: 206 LGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G     D DG   +++ +V + G  +    ++
Sbjct: 265 LGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD-ASS 323

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    ++ NIGK +A V                       
Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILDKHEE 383

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A + G+V ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 444 MGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 503

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GAV+GFA+T+ + IL SMFTAI   R ++  I   K++  + I
Sbjct: 564 TGAVKGFAVTLSIGILTSMFTAIVGTRCIVNLIYGGKRVDKLSI 607



 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   +  FA
Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     I+  IY  + 
Sbjct: 572 VTLSIGILTSMFTAIVGTRCIVNLIYGGKR 601


>gi|238795569|ref|ZP_04639084.1| Protein-export membrane protein secD [Yersinia mollaretii ATCC
           43969]
 gi|238720688|gb|EEQ12489.1| Protein-export membrane protein secD [Yersinia mollaretii ATCC
           43969]
          Length = 604

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 159/524 (30%), Positives = 286/524 (54%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    PS + K     + LGLDLRGG H ++EVD D  +    +   D LR+ L+++ I
Sbjct: 93  NLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R++ N  + + F D + +++    ++   +             ++ +     +  
Sbjct: 153 PYATVRKLDNYGVEVRFRDDKTRDDAISYLSSRHR-----------DLVIGSNGSNTLKA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++ + + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++
Sbjct: 202 VMTDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N        G            +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNSNVDASVAATGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D    +  V+IS D  G       T+DNIGKP+A +      +                
Sbjct: 322 TDEYN-QAQVNISLDSAGGSLMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 380

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LGS +I 
Sbjct: 381 VINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIT 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GL + +LFM++ Y K+G++A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 441 QGLEACLWGLAVSILFMVIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+N+T LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 561 TGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ I ++  F + A T L+ ++   +G  +L  
Sbjct: 429 TIGPTLGSQNITQGLEACLWGLAVSILFMVIYYR-KFGVIASTALLANLVLIVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 545 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|56708192|ref|YP_170088.1| preprotein translocase subunit SecF [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89256209|ref|YP_513571.1| preprotein translocase subunit SecF [Francisella tularensis subsp.
           holarctica LVS]
 gi|110670663|ref|YP_667220.1| preprotein translocase subunit SecF [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115314676|ref|YP_763399.1| preprotein translocase subunit SecF [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134302104|ref|YP_001122073.1| preprotein translocase subunit SecF [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|167009754|ref|ZP_02274685.1| protein-export membrane protein SecF [Francisella tularensis subsp.
           holarctica FSC200]
 gi|224457295|ref|ZP_03665768.1| preprotein translocase subunit SecF [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254367535|ref|ZP_04983561.1| preprotein translocase, subunit F [Francisella tularensis subsp.
           holarctica 257]
 gi|254369203|ref|ZP_04985215.1| RND superfamily resistance-nodulation-cell division antiporter
           [Francisella tularensis subsp. holarctica FSC022]
 gi|254370679|ref|ZP_04986684.1| RND superfamily resistance-nodulation-cell division antiporter
           [Francisella tularensis subsp. tularensis FSC033]
 gi|254875004|ref|ZP_05247714.1| preprotein translocase subunit secF [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604684|emb|CAG45747.1| preprotein translocase, subunit F, membrane protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|89144040|emb|CAJ79288.1| preprotein translocase, subunit F, membrane protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|110320996|emb|CAL09130.1| preprotein translocase, subunit F, membrane protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|115129575|gb|ABI82762.1| RND superfamily resistance-nodulation-cell division antiporter
           [Francisella tularensis subsp. holarctica OSU18]
 gi|134049881|gb|ABO46952.1| protein-export membrane protein SecF [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134253351|gb|EBA52445.1| preprotein translocase, subunit F [Francisella tularensis subsp.
           holarctica 257]
 gi|151568922|gb|EDN34576.1| RND superfamily resistance-nodulation-cell division antiporter
           [Francisella tularensis subsp. tularensis FSC033]
 gi|157122153|gb|EDO66293.1| RND superfamily resistance-nodulation-cell division antiporter
           [Francisella tularensis subsp. holarctica FSC022]
 gi|254841003|gb|EET19439.1| preprotein translocase subunit secF [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159408|gb|ADA78799.1| preprotein translocase subunit SecF [Francisella tularensis subsp.
           tularensis NE061598]
 gi|332678397|gb|AEE87526.1| Protein-export membrane protein SecF [Francisella cf. novicida Fx1]
          Length = 314

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 159/300 (53%), Gaps = 3/300 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                   +I F+  + +    S+L  + S+  +FT GLN G+DF GG Q+ +  +    
Sbjct: 1   MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648
            S   +   +    + +     G+ N  +        +     + +  +    ++     
Sbjct: 61  DSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVENSLD 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           + +Q+   +GP++ +EL   G++ +I++ + +LIYI  RF+  F + A   L+ D    L
Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N +    + S  +++++SIN+T
Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNRSINDT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS    + V+ + ++GGS + +F++ +  GIVV   SSI++A  + + +   R 
Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 299


>gi|83311612|ref|YP_421876.1| preprotein translocase subunit SecF [Magnetospirillum magneticum
           AMB-1]
 gi|82946453|dbj|BAE51317.1| Preprotein translocase subunit SecF [Magnetospirillum magneticum
           AMB-1]
          Length = 319

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 170/299 (56%), Gaps = 4/299 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL-ANRPVD 590
             +P      F+R R++   I+ +  I S   +   G N+GIDF GGI L       P D
Sbjct: 6   RFLPHGTKYDFIRYRWFAFCITAVLIIGSFASIAIKGFNFGIDFAGGILLEAQSTTGPAD 65

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R+ L  L +G++S Q F      ++    +          +  + K    +    T
Sbjct: 66  LHGMRTTLGHLGLGEVSLQEFGTTGRDVMIRVQRQEGDEKTQ--MAALSKVKASLGEGFT 123

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +  EIVGPK+  EL+R G++ V+++  A+ +Y+W RF+W F +GA+ +   D+  T G 
Sbjct: 124 YRRVEIVGPKVGGELVRDGVLAVVLALGAIALYVWFRFEWQFGVGALVSTFHDVITTFGL 183

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F++ G+EFNLT VAA+LT+ GYSVND VV YDR+R+N++ +  ++S  DL++ ++NETL 
Sbjct: 184 FSITGLEFNLTTVAAILTIAGYSVNDTVVEYDRVRENLRKF-KTMSLYDLLNLAVNETLA 242

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           R++ T    F++VL +   GG V+  F+I M +G+++   SSI++A P+L++      K
Sbjct: 243 RTILTVSTVFVTVLALLFVGGEVLRGFSIAMLWGLIIGTFSSIYVAMPMLIYFNLRTGK 301


>gi|260771413|ref|ZP_05880338.1| protein-export membrane protein SecD [Vibrio furnissii CIP 102972]
 gi|260613539|gb|EEX38733.1| protein-export membrane protein SecD [Vibrio furnissii CIP 102972]
 gi|315180994|gb|ADT87908.1| protein-export membrane protein SecD [Vibrio furnissii NCTC 11218]
          Length = 617

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 157/536 (29%), Positives = 282/536 (52%), Gaps = 42/536 (7%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L  + P++L                + LGLDLRGG H ++EVD D  +   +   
Sbjct: 100 IVALNLAASTPSWLESIGAA---------PMKLGLDLRGGVHFLMEVDMDAAMEKLIGQQ 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            +  RS L++E I   ++R + N + ++  D+   E     +    +        D    
Sbjct: 151 EEAFRSELREEKIRYRAIRPLANSVEITLRDAEQVEQARKALESKHR--------DMTFV 202

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
              T     ++   ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++L
Sbjct: 203 PSGTEGRFTLTATFTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVEL 262

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVE 248
           PG QD +R +++LG TA + F +V                G     D  G   +++ +V 
Sbjct: 263 PGVQDTARAKEILGATATLEFREVDDQADLAAAAAGRVPAGSEIKLDRSGRPVVLKKRVI 322

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------ 302
           + G  +    ++   +  +P V+IS D  G  +    ++ NIGK +A V           
Sbjct: 323 LGGSSITD-ASSSTDEYGRPQVNISLDSEGGSKMSAFSKKNIGKLMATVFAEYKDSGEKT 381

Query: 303 ------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                       +      Q+      +I+G  ++  A  LA +LRAG+L   ++IVEER
Sbjct: 382 AEGKVILAKHEEVINQATIQSALGRNFRITGINSVAEAHNLALLLRAGALIAPISIVEER 441

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG- 409
            +G  +G  +I  G  A + GL+ +++F  + Y K+GL+A+ ++  N++L + ++S++  
Sbjct: 442 TIGPSMGQQNIDMGIQACIWGLLAVMIFTALYYRKFGLIANVALAANLVLIIGVMSMIPG 501

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT
Sbjct: 502 ATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADANIT 561

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            LI  ++LF  G GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 562 TLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRINKLSI 617



 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 98/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +  + +        N    ++ L R     G +         +  +   
Sbjct: 371 FAEYKDSGEKTAEGKVILAKHEEVINQATIQSALGRNFRITGINSVAEAHNLALLLRAGA 430

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++I+  + ++  F L A   L  ++
Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGLLAVMIFTALYYR-KFGLIANVALAANL 489

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRNPQQAIHQ 546

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLL 606

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 607 YGGKRINK 614



 Score = 39.3 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++      I  L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVVFAIAISALYALPNIYGEDPAIQVTGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D +   L    +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTKALDTAHLSHKSIALEDGSILVRFNDTDTQISARDVISEAL 95


>gi|15603991|ref|NP_220506.1| preprotein translocase subunit SecF [Rickettsia prowazekii str.
           Madrid E]
 gi|6647857|sp|Q9ZE34|SECF_RICPR RecName: Full=Protein-export membrane protein secF
 gi|3860682|emb|CAA14583.1| PROTEIN-EXPORT MEMBRANE PROTEIN SECF (secF) [Rickettsia prowazekii]
 gi|292571707|gb|ADE29622.1| Protein-export membrane protein secF [Rickettsia prowazekii Rp22]
          Length = 311

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 174/306 (56%), Gaps = 2/306 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +     +P+ I   FM  +      SI+ S+ S+  +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRFVPNKIDFDFMNFKKVSYSFSIILSLISLIWISIYKFNFGIDFVGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R+ L +L+IG++  QNF  E++  +R      +      +  +        
Sbjct: 61  DQAPDLPKMRAVLSALEIGEVVLQNFGSERDLSIRF-GSSSEENLMKNIDIIKTSLRNNF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S +A+++YI +RF+WYF  G +  L+ D+ 
Sbjct: 120 PYNFEYRKVDFVGPQVGRQLIEAGAMAMLFSFLAIMVYIGVRFEWYFGFGILIALVHDVI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++FNL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ SI
Sbjct: 180 LALGFMSMTKLDFNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKY-HKKNITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL    +
Sbjct: 239 NETLSRTILTVITTLLANLALILFGGKAIHSFSVLVFFGIIAGTYSSIFISAPILTMFAN 298

Query: 826 WRAKNA 831
            +    
Sbjct: 299 RKFNKK 304


>gi|293390420|ref|ZP_06634754.1| protein-export membrane protein SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950954|gb|EFE01073.1| protein-export membrane protein SecF [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 333

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 97/307 (31%), Positives = 167/307 (54%), Gaps = 6/307 (1%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           +   +      +      ++FM+ R WG   S++    S+  +FT G N+G+DF GG+ +
Sbjct: 17  NRSQSIQEIQGIKLPFRLVEFMKYRMWGYLASVIIIAVSLFFVFTKGFNWGLDFTGGVVV 76

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               ++P DL  +RS L    I     Q   G ++ ++RL           ++ + VK+ 
Sbjct: 77  DTHFSQPADLEKIRSTLVQNGIESPLVQTTGGVRDVMIRLPATD-----NAQIGDNVKRM 131

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           ++ +     I++TE VGP +  EL +  I   + + I +L+Y+ IRF+W  A+G + +L 
Sbjct: 132 LSTLDSDIQIRSTEFVGPNVGEELTQGAIYATLTTLIMLLLYVGIRFEWRLAVGGVLSLA 191

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            D+  TLG F+   IE +LT +AA+L+++GYS+ND +VV+DR+R+N +      S  D+I
Sbjct: 192 HDVIVTLGAFSYLQIEMDLTFIAAILSVVGYSLNDSIVVFDRVRENFRKIRRIASI-DII 250

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + S+ +TL R++ TS+   I V+ + V+GG  I SF++ +  GI     SSIF+A  I  
Sbjct: 251 NISLTQTLSRTIMTSVTTLIVVIALFVFGGPTIHSFSLALLIGIGFGTYSSIFVAIAIAY 310

Query: 822 FIYDWRA 828
            +   R 
Sbjct: 311 DLGLDRE 317


>gi|15602092|ref|NP_245164.1| preprotein translocase subunit SecD [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12720453|gb|AAK02311.1| SecD [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 616

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 154/524 (29%), Positives = 281/524 (53%), Gaps = 39/524 (7%)

Query: 30  SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       +  GLDLRGG   ++EVD    ++   +   D LR+ L+KE  
Sbjct: 104 NLAPATPKWLTSVGAYPMKWGLDLRGGVRFLMEVDMKSALHKRQEQLQDNLRTQLRKEKY 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               ++  +N    ++       + +   +                   + + ++  +++
Sbjct: 164 QYTGIKSAENFSTLVTLLKPEQLDEVQRFLRK-----------QHHNLEIKSVSDNTLAL 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS+  +++    AIEQ++ I+R+R+ ++G+SE+ IQR G+ RI+++LPG QD +R +++
Sbjct: 213 TLSEAALNESRESAIEQNLTILRKRVSELGVSEAVIQRQGAERIVVELPGVQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N +      G          D +G   ++  +  + G H+  A++ 
Sbjct: 273 LGATATLEFRLVNENVNLDSATRGFVPNDSEVKLDRNGRPVVLYKRAVLGGEHITNASSG 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D +T +P V ++ D  G     + TR N+ KP+A +      +                
Sbjct: 333 LDQQTSRPQVSVTLDSEGGEIMSQATRLNLKKPMATLYVEYKDSGKKDENGKAILEKHEE 392

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q     + QI+G  +   A  LA +LR+G+L   + IVEER +G  LG++++ 
Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVR 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A   GL+ +++FM + Y K+GL+A+ ++  N++L + L+SLL  ATL++P IAGIV
Sbjct: 453 QGLEASFWGLLAVIIFMTLYYRKFGLIANIALIANIVLVVGLMSLLPGATLSMPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+++D+N+L+ ERI+EE R  + +  ++  G+S A+++IFD+N+T ++ +V+L+  G
Sbjct: 513 LSVGMSIDANVLIFERIKEEIRNGRPIQQAIHEGYSGAFTSIFDANLTTILTSVILYAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G V+GFAIT+ L + ISMFTAI   RA++ F+   K++  + I
Sbjct: 573 AGPVKGFAITLALGVGISMFTAIVGTRAIVNFLYGGKRINKLSI 616



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 85/177 (48%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  E +R+G+       +A++I++ + ++  F L A   LI +I   +G  +L  
Sbjct: 441 TIGPSLGAENVRQGLEASFWGLLAVIIFMTLYYR-KFGLIANIALIANIVLVVGLMSLLP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G S++  V++++R+++ ++        +  I +  +        
Sbjct: 500 GATLSMPGIAGIVLSVGMSIDANVLIFERIKEEIR---NGRPIQQAIHEGYSGAFTSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   +  FAI +A G+ ++  ++I     I+ F+Y  +  N 
Sbjct: 557 ANLTTILTSVILYAVGAGPVKGFAITLALGVGISMFTAIVGTRAIVNFLYGGKRINK 613



 Score = 42.4 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  IG+L +LPN   +    +                RG         
Sbjct: 4   RYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQISGT------------RG--------- 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         E+++ L +  +   S+      I   F ++  +    DK++  L
Sbjct: 43  -----QEANAQIFSEVQTLLNQNNLETKSIILENGSILARFHNTDDQLLAKDKLSEKL 95


>gi|254361838|ref|ZP_04977973.1| preprotein translocase subunit SecF [Mannheimia haemolytica PHL213]
 gi|153093373|gb|EDN74369.1| preprotein translocase subunit SecF [Mannheimia haemolytica PHL213]
          Length = 324

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 97/293 (33%), Positives = 161/293 (54%), Gaps = 4/293 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM+ R+ G   S++ +   I  + T G N+G+DF GG  +    ++P DL+ +R
Sbjct: 16  PYKLIPFMKYRYVGFIFSLIVTALCIFTIATKGFNWGLDFTGGTVIETQFSQPADLAKLR 75

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + LE+   G+   Q    +K+ ++RL    GD     +V+EM+ +K+    P +TI++ E
Sbjct: 76  TELENSGYGNALVQTTGSQKDLMIRLAASAGDMSVGNKVMEMIHQKL---DPNATIKSIE 132

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + +   +LIY+  RF+W  A+G I  L  D+  T+G F+   
Sbjct: 133 FVGPNVGEELTQGAIYATLATLAMLLIYVGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQ 192

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N      S S   +    +++TL R++ T
Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKVRRSSSIEIIDIS-LSQTLSRTLMT 251

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S+     VL +   GG  + SF++ +  GI     SSI+IA  + L +   R 
Sbjct: 252 SVTTLFVVLALFYLGGPTLHSFSLALLIGIGFGTYSSIYIAIGVALQLGLKRE 304


>gi|311694373|gb|ADP97246.1| preprotein translocase subunit SecF [marine bacterium HP15]
          Length = 317

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 155/288 (53%), Gaps = 6/288 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM  R     ISI   + SI LL T GLN+G+DF GG  +         L  +RS L 
Sbjct: 9   FDFMGLRKIASIISISLIVVSIALLATRGLNFGMDFTGGTSVEFEYAEAPQLDEIRSRLT 68

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                  S QNF  +   LVR+     D     ++   V + + E      + ++E VG 
Sbjct: 69  EAGYEQFSVQNFGADTTVLVRMAEADND-----QLAPEVTRTLKEGGADLELVSSEFVGS 123

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  EL     +G++I+   +LIY+ +RF++ F + ++  L  D+   LG FALF   F+
Sbjct: 124 QVGEELKEDSGLGLLIALAVVLIYVGMRFQFKFGIASVVPLAHDVIIVLGVFALFQWTFD 183

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AA+L +IGYS+ND +VV DR+R+N +       + D+I++SI++T+ R++ TS   
Sbjct: 184 LTVLAALLAVIGYSLNDTIVVADRIRENFRKMRVGEPW-DIINESIHQTIARTINTSGTT 242

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + +L +   GG  I +FA+ +  G+VV   SSI+++A +L+ +   R
Sbjct: 243 LVVLLALYFLGGEAINNFALALIIGVVVGTYSSIYVSANLLMVMGVSR 290


>gi|71908894|ref|YP_286481.1| preprotein translocase subunit SecF [Dechloromonas aromatica RCB]
 gi|71848515|gb|AAZ48011.1| protein translocase subunit secF [Dechloromonas aromatica RCB]
          Length = 314

 Score =  214 bits (543), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 94/303 (31%), Positives = 162/303 (53%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS+L  I ++  LFT GL+  ++F GG  +     +  D
Sbjct: 1   MEFFRIHKDIPFMRHALKFNVISLLTFILAVVFLFTKGLHLSVEFTGGTLIETHYEQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  L      D S QNF   ++ ++RL  +        ++ E V K +    P S 
Sbjct: 61  LEKIRGALGKSGFSDFSVQNFGSSQDVMIRLPLK--SEQNTNQIGESVMKALEAEAPGSQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL   G + +++  I ++IY+  RF+W F++ AI   + D+   LGF
Sbjct: 119 LRRVEFVGPQVGKELAENGAMALLLVVIGIVIYLAFRFEWRFSVSAIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VVV+DR+R+  K     +S  +++D +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVVFDRVRETFKK-VRGLSTPEVLDHAITSTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T     + VL M ++GG  +  FA+ +  GI     SS+ +A+P+++++   R + 
Sbjct: 238 RTIITHGCTQLMVLSMLIFGGETLHYFAMALTIGICFGIYSSVLVASPLVMWLGVSREQF 297

Query: 831 ARI 833
            ++
Sbjct: 298 IKV 300


>gi|254373050|ref|ZP_04988539.1| preprotein translocase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570777|gb|EDN36431.1| preprotein translocase [Francisella novicida GA99-3549]
          Length = 314

 Score =  213 bits (542), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 164/300 (54%), Gaps = 3/300 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NRPV 589
                   +I F+  + +    S+L  + S+  +FT GLN G+DF GG Q+ +    +  
Sbjct: 1   MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVPL 648
           D   +   L        +   F    NFL++      ++ A++   ++   K+  E    
Sbjct: 61  DSETMAKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDVQQYLKQQVENSLD 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           + +Q+   +GP++ +EL   G++ +I++ + +LIYI  RF+  F + A   L+ D    L
Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N +    + S  +++++SIN+T
Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNRSINDT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS    + V+ + ++GGS + +F++ +  GI+V   SSI++A  + + +   R 
Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIIVGTYSSIYVAGVVAVALGLNRE 299


>gi|297181288|gb|ADI17480.1| preprotein translocase subunit secf [uncultured beta
           proteobacterium HF0130_04F21]
          Length = 308

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 105/293 (35%), Positives = 154/293 (52%), Gaps = 4/293 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM+       ISI   I SI  +   GL++ I+F GG  + V   +   L  +R  L 
Sbjct: 10  IAFMKHAKLLNCISIFTFIASIVFIIYQGLHFSIEFTGGTLIEVSYPKQAPLEKIRDKLV 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            L   D   QNF   K+ L+RL     +      V   +K           ++  E VGP
Sbjct: 70  DLGYTDSQVQNFGTSKDVLIRLPLDSKNKKEAEDVFNEIKLINENEAE---LRRIEYVGP 126

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           +I  EL R GI+ +I   I ++IY+ IRF+W FA+ AI   + D+   LGFF+LF  EF+
Sbjct: 127 QIGSELARDGILAMIFVVIGIMIYLAIRFEWKFAVAAIIANLHDVVIILGFFSLFQWEFS 186

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L+ +AAVL ++GYSVN+ VVV DR+R+N K    S S  + I+ +I  T+ R++ T    
Sbjct: 187 LSVLAAVLAVLGYSVNESVVVADRIRENFKRMRKS-SVVETINNAITRTMSRTIITHGTT 245

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              VL M ++GG V+  FAI +  GI+    SSIF+ API +++   R    +
Sbjct: 246 ETMVLAMLIFGGPVLHYFAIALTIGIIFGIYSSIFVMAPITIWLGIKREDLVK 298


>gi|212702500|ref|ZP_03310628.1| hypothetical protein DESPIG_00517 [Desulfovibrio piger ATCC 29098]
 gi|212674161|gb|EEB34644.1| hypothetical protein DESPIG_00517 [Desulfovibrio piger ATCC 29098]
          Length = 526

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 192/530 (36%), Positives = 287/530 (54%), Gaps = 21/530 (3%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            + +  ++  + L+ ALP+           + +P  +I+LGLDL+GG HL L VD    V
Sbjct: 7   RLAVALLVFGLCLVYALPSVPYIGT--ALENVLPSKKINLGLDLKGGIHLTLGVDVAKAV 64

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
           +  L +   ++R   K E I V   R + N   L FA  R ++     +   LQ    +L
Sbjct: 65  SNSLALAGQDIRRLAKDEKIVVLHPRVVGND-KLEFALPRVEDEAK--LQEILQKNFPQL 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
           NV   +    T              I+++   A++Q++  IR RIDQ G++E  I++   
Sbjct: 122 NVGEPR---RTEAGLRYVAEFRPEEINRIEDMALDQALRTIRNRIDQFGVAEPDIRKQEG 178

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-----------RD 235
           +RI +QLPG  DP R  Q+LG TA + FH V  +      +     +            +
Sbjct: 179 NRIQVQLPGLSDPRRAVQILGQTAHLEFHLVRDDVDPNKAVLPSGVMALPLLEKGHDGSE 238

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  VE    +SG  +  A   F+    +  V ++F+  GA  F  VT +N+G+ +A
Sbjct: 239 VATRLIAVEKDAMLSGEDVADAQPTFEKN--RASVSLNFNSRGATLFENVTGENVGRRMA 296

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD +V +APVI Q I  G+A I+G FT + A  LA +LRAGSLP  ++++EER VG  
Sbjct: 297 IVLDDKVYSAPVIQQRIAGGRAVITGQFTTQEATDLAIVLRAGSLPAPVSVLEERTVGPS 356

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG +SI  G  A + G   +V+FM + YG  G++AD  +   +++ +A ++  GATLTLP
Sbjct: 357 LGQESIDSGINAALVGAAAVVVFMAIYYGMSGVIADVMLCFTMLIVMAGMAGFGATLTLP 416

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL IG+AVD+N+L+ ERIREE     S   ++  GF RA  +I DSN+T +IATV
Sbjct: 417 GIAGIVLTIGMAVDANVLIYERIREELHLGLSPLAAVKAGFERATISITDSNLTTIIATV 476

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +L+ FG G +RGFA+T+ L I+ SMFTAI + RA+  +  R    K I I
Sbjct: 477 LLYQFGTGPIRGFAVTLSLGIVASMFTAIFVSRAIFEYWARKCGPKGISI 526



 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 59/134 (44%), Gaps = 3/134 (2%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            + A   L   +   +   A FG    L  +A ++  IG +V+  V++Y+R+R+ + L  
Sbjct: 388 GVIADVMLCFTMLIVMAGMAGFGATLTLPGIAGIVLTIGMAVDANVLIYERIREELHL-- 445

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
             +S    +             +++   I+ + +  +G   I  FA+ ++ GIV +  ++
Sbjct: 446 -GLSPLAAVKAGFERATISITDSNLTTIIATVLLYQFGTGPIRGFAVTLSLGIVASMFTA 504

Query: 813 IFIAAPILLFIYDW 826
           IF++  I  +    
Sbjct: 505 IFVSRAIFEYWARK 518


>gi|149926691|ref|ZP_01914951.1| protein export protein SecD [Limnobacter sp. MED105]
 gi|149824620|gb|EDM83836.1| protein export protein SecD [Limnobacter sp. MED105]
          Length = 620

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 171/504 (33%), Positives = 276/504 (54%), Gaps = 21/504 (4%)

Query: 30  SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L R P  +       + LGLDLRGG H +L+VD D  +           +  L++E +
Sbjct: 103 NLLSRSPDWLTNINALPMYLGLDLRGGVHFLLQVDMDAALEKRKDALLASAKQTLREEDL 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S  +      L+F D+  +      +      +      +  +          +   
Sbjct: 163 RYASAPRTPAGFNLTFRDAEARNKAQAALAKEYPDLQLATPENSSEF--------ALVAT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+     Q   +A+ Q++  +  RI+++G++E  IQR G+ RI++QLPG QD ++ + +L
Sbjct: 215 LAPEIEQQAREYALRQNITTLHNRINELGVAEPVIQRQGADRIVVQLPGVQDTAKAKDIL 274

Query: 207 GTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           G TA +    V  +   +         FG+    +  G   L++ +V ++G +L  A A 
Sbjct: 275 GRTATLEVRMVDDSPEAQSALASGIVPFGLERYTERGGRDLLLKSEVILTGDNLTDAQAG 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPSGK 316
           FD +T +P V ++ D  G+R F  +T +NIGK +A+VL  +    V+TAPVI   I  G+
Sbjct: 335 FDNQTQEPAVHLTLDSQGSRIFRNITAENIGKRMAIVLIEKGKGEVVTAPVIRGEIGGGR 394

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
            QISG+     +  LA +LRAGSL   ++I+EER +G  LG+D+I KG  + + G V + 
Sbjct: 395 VQISGSMNTVESADLALLLRAGSLAAPMDIIEERTIGPSLGADNIDKGINSTLYGFVALG 454

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           +FM++ Y  +G+ + F++ +NV+L  ALLS+L ATLTLP +A + L +G+A+D+N+L+NE
Sbjct: 455 IFMMLYYLLFGVFSVFALAVNVLLLFALLSVLQATLTLPGLAAVALTLGMAIDANVLINE 514

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           RIREE R       ++  G+ RA++TI DSNIT LIA + L  FG G VRGFA+   L I
Sbjct: 515 RIREELRDGAQPQQAIAAGYERAWATILDSNITTLIAGLALLIFGSGPVRGFAVVHCLGI 574

Query: 497 LISMFTAISIVRAMMIFIIRYKKM 520
           L S+F+A+ + R ++      KK 
Sbjct: 575 LTSIFSAVVVSRGVVNLWYGRKKK 598



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 84/208 (40%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP +  + I KGI   +   +A+ 
Sbjct: 395 VQISGSMNTVESADLALLLRAGSLAAPMDIIEERTIGPSLGADNIDKGINSTLYGFVALG 454

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++ + +   F + ++  L +++       ++      L  +AAV   +G +++  V++ 
Sbjct: 455 IFMMLYY-LLFGVFSVFALAVNVLLLFALLSVLQATLTLPGLAAVALTLGMAIDANVLIN 513

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++        +  I           + +++   I+ L + ++G   +  FA+  
Sbjct: 514 ERIREELRD---GAQPQQAIAAGYERAWATILDSNITTLIAGLALLIFGSGPVRGFAVVH 570

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  S++ ++  ++   Y  + K
Sbjct: 571 CLGILTSIFSAVVVSRGVVNLWYGRKKK 598



 Score = 39.3 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 38/112 (33%), Gaps = 21/112 (18%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  +G+L  LPNF  ++   +  S   K+ + L  DL G     LE          
Sbjct: 1   MIAIVLVLGVLYTLPNFYGEAPAVQVSS--GKSTLKLSPDLAGQLSSQLEAQG------- 51

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                      +K +G+           + L F  S  +    D +   L  
Sbjct: 52  -----------IKPDGVFFEE-TLGGGTLKLRFNSSEEQLKARDFLQSKLNP 91


>gi|253990962|ref|YP_003042318.1| preprotein translocase subunit SecD [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782412|emb|CAQ85576.1| Protein-export membrane protein secD [Photorhabdus asymbiotica]
          Length = 615

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 164/537 (30%), Positives = 284/537 (52%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L +   +          + LGLDLRGG H ++EVD +  +    +  
Sbjct: 100 VVALNLAPATPTWLSKLGAE---------PMKLGLDLRGGVHFLMEVDMETALGKLQEQN 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LR+ L+++GI   ++R+  N  + + F D + + +    +T   +            
Sbjct: 151 IDGLRTDLREKGIPYSTIRKADNYGVEIRFRDEKARSDAESYLTGRHR-----------D 199

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +        +  V+S     +  S+A++Q++ I+R R++Q+G++E  +QR G+ RI+++
Sbjct: 200 LVFSVGVNNTLKAVMSDERQREARSYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVE 259

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  +        G            DG+  ++  +V
Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNSSVDATAAESGRVPGDSEVKNTRDGSPVVLYKRV 319

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302
            ++G H+  +T+  D    +P V+IS D  G       T+DN+GKP+A +          
Sbjct: 320 ILTGDHITDSTSGTDEYG-QPEVNISLDSAGGTAMSNFTKDNVGKPMATLFVEYKDSGKK 378

Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                        +      Q       +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 379 DANGRAVLVKNEEVINIANIQTRLGNNFRITGISNATEARQLSLLLRAGALIAPIQIVEE 438

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG  +I +G  A + GL+  +LFM++ Y K+GL+A  ++  N++L + ++SLL 
Sbjct: 439 RTIGPTLGLQNIEQGLEACLWGLIASILFMVIYYRKFGLIASSALLANLVLIVGVMSLLP 498

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+N+
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTIQQAIHEGYKGAFSSIVDANL 558

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  V+L+  G G+++GFAIT  + +  SMFTAI   RA++  +   K++K + I
Sbjct: 559 TTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 615



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++ + +    N    +  L       G S A       +  +   
Sbjct: 369 FVEYKDSGKKDANGRAVLVKNEEVINIANIQTRLGNNFRITGISNATEARQLSLLLRAGA 428

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++ I ++  F L A + L+ ++
Sbjct: 429 LIAPIQIVEERTIGPTLGLQNIEQGLEACLWGLIASILFMVIYYR-KFGLIASSALLANL 487

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      + +  I +
Sbjct: 488 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTIQQAIHE 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    V  ++   I+ + +   G   I  FAI  + G+  +  ++I     I+  +
Sbjct: 545 GYKGAFSSIVDANLTTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAIVNLL 604

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 605 YGGKRIKK 612



 Score = 41.2 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++      IGLL ALPN   +                            +++ 
Sbjct: 4   RYPLWKYLMLIAAILIGLLYALPNLYGEDPA-------------------------VQIT 38

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               +    +   D++R+ L+K+ I   S+      I   F +   +    + +   L
Sbjct: 39  GARGIAAS-ERTLDQVRNVLEKDQITSKSIVLENGAILARFNNPDIQLRAREILMSAL 95


>gi|85860050|ref|YP_462252.1| preprotein translocase subunit SecF [Syntrophus aciditrophicus SB]
 gi|85723141|gb|ABC78084.1| protein translocase subunit [Syntrophus aciditrophicus SB]
          Length = 302

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 156/303 (51%), Gaps = 4/303 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPV 589
             +I       F+      V ISI++ +  I  +F HG  N+GIDF GG  + +  ++  
Sbjct: 1   MEIIKSETHFNFVAMMKMAVTISIVYILIGIASIFWHGGLNFGIDFAGGTLIQIRFDQET 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +  +R  LE + + +   Q F   +  +              ++   ++    +     
Sbjct: 61  SVEKLRQTLEPIGMENSIIQQFGPNEMVVRTAASSMDLKGLSGQIENALQTTYGQKA--F 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I+  E VGPK+  +L RK ++ +I S I +L+Y+  RF+  +A G I  L+ D+  T+G
Sbjct: 119 EIRRVESVGPKVGSDLTRKALLAIIFSWIGILVYVGFRFELRYAFGGIIALVHDVLVTVG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             +L   EF+L  VAA+LT+IGYS+ND +V++DR+R+N +     +   D+I+ S+N+TL
Sbjct: 179 TLSLLNKEFDLIIVAALLTIIGYSINDTIVIFDRIRENTRKNMK-MPLMDVINLSVNQTL 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ TS    + +L +  +GG VI  FA  +  G +    S++FIA+PI+L     R  
Sbjct: 238 SRTLLTSFTVILVLLALFFFGGPVIHDFAFTLLVGCIAGVYSTVFIASPIVLAFEKIRPS 297

Query: 830 NAR 832
             +
Sbjct: 298 RIK 300


>gi|302038579|ref|YP_003798901.1| protein-export membrane protein SecD [Candidatus Nitrospira
           defluvii]
 gi|300606643|emb|CBK42976.1| Protein-export membrane protein SecD [Candidatus Nitrospira
           defluvii]
          Length = 549

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 179/560 (31%), Positives = 297/560 (53%), Gaps = 46/560 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNF--LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           M+     ++    +    ++  LP++  L + +       +P   I+LGLDL+GG HLVL
Sbjct: 1   MKKVGGRLLALVTMVVASIIFFLPSYQPLYKELPRWVREVLPDKGITLGLDLQGGIHLVL 60

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGI-GVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           EV+ED  V   ++  +  L+  L ++ I      R   ++IT+ F ++         +  
Sbjct: 61  EVEEDRAVEIAVERTAAGLQDLLVEKKIPAESVKRTGSSQITIGFQNAE--------LKA 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q +        +  +    +  ++   L    I ++   AI Q++E IR RIDQ G++
Sbjct: 113 QVQKMLDDFPTYVE--VESAGSANKVVWELRDAEIKRIKDSAINQALETIRNRIDQFGVA 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-------- 229
           E  IQR G  ++++QLPG +D    + L+  TA + F  +   N  K  + G        
Sbjct: 171 EPLIQRQGLKQVVVQLPGIKDAKLAKDLIKQTALLEFKLLDDENQLKLDLPGRIQKGKER 230

Query: 230 ------------------------VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                                    +         YLV+ +V ++G  L+ A  +     
Sbjct: 231 EDAFLKQVEGKVPEGDQILFERIVEKESGQEWLAPYLVKKRVMLAGDVLSDARVSIGQFN 290

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +P V ++FD  GAR F  +T +N+ K +A+VLD  + +APVI + I  G+AQI+G F++
Sbjct: 291 -EPYVSVTFDAKGAREFDRITGENVKKRMAIVLDNTIYSAPVIQERISGGRAQITGTFSM 349

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  L+ +LRAG+LP  L I+++  VG  LG DSI KG  A +   +L+++FM + Y  
Sbjct: 350 EEANNLSIVLRAGALPAPLKIIQDLTVGPSLGQDSIEKGVKATLFAGLLVIVFMALYYRL 409

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++A+F++ LN+I  +  L+ L ATLTLP IAGI+L IG+ VDSN+L+ ERIREE R+ 
Sbjct: 410 SGVIANFALLLNLICLIGALAGLNATLTLPGIAGIILTIGMGVDSNVLIFERIREELRQG 469

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           ++V  ++D G+ +A  TI DS++T LI    LF FG G ++GFA+T+ L I I++FTA+ 
Sbjct: 470 KAVRVAIDAGYDKALLTIVDSHVTTLITGFALFLFGTGPIKGFAVTLCLGIAINLFTALV 529

Query: 506 IVRAMMIFIIRYKKMKSIDI 525
             + +     + +K++ + I
Sbjct: 530 GTKVVFDLFNQRRKIEQLSI 549



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 87/176 (49%), Gaps = 5/176 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I KG+   + + + +++++ + ++    + A   L+L++   +G  A     
Sbjct: 377 GPSLGQDSIEKGVKATLFAGLLVIVFMALYYRLS-GVIANFALLLNLICLIGALAGLNAT 435

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG  V+  V++++R+R+ ++      + R  ID   ++ L   V + +
Sbjct: 436 LTLPGIAGIILTIGMGVDSNVLIFERIREELRQ---GKAVRVAIDAGYDKALLTIVDSHV 492

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              I+   + ++G   I  FA+ +  GI +   +++ +   ++  +++ R K  ++
Sbjct: 493 TTLITGFALFLFGTGPIKGFAVTLCLGIAINLFTAL-VGTKVVFDLFNQRRKIEQL 547


>gi|270157326|ref|ZP_06185983.1| protein-export membrane protein SecF [Legionella longbeachae
           D-4968]
 gi|289164279|ref|YP_003454417.1| protein-export membrane protein SecF [Legionella longbeachae
           NSW150]
 gi|269989351|gb|EEZ95605.1| protein-export membrane protein SecF [Legionella longbeachae
           D-4968]
 gi|288857452|emb|CBJ11280.1| putative protein-export membrane protein SecF [Legionella
           longbeachae NSW150]
          Length = 305

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 161/298 (54%), Gaps = 7/298 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    + FM AR W    SIL  + SI  L  HGL +G+DF GG Q+ V  +   D
Sbjct: 1   MEFFNPNSNVDFMGARRWTAMFSILIFVLSIGALTIHGLKWGLDFTGGTQIEVSYSSAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R +L      +    ++   K+ L+ +  +     A+      +  ++   +P + 
Sbjct: 61  LPSIRESLAKAGFKEAQVVSYGTSKDVLISIAPREDKEQAR------LVDQVMTALPGAN 114

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            Q  E VGP++ +EL  KG + V++S +A +IYI +RF++  A+ +   L+ D    LG 
Sbjct: 115 KQRVEFVGPQVGQELATKGALAVVVSLLATMIYIAMRFEYRLAVSSAVALVHDPVLILGI 174

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA FG+EF+L A+A +L +IGYS+ND +VV+DR+R+N      + S  ++++ SIN+TL 
Sbjct: 175 FAFFGVEFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKIRRATSI-EIMNISINQTLS 233

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS      VL + ++GG  I  F++ +  GI++   SSI++A  + + +   R 
Sbjct: 234 RTIMTSTLTLFVVLALFIYGGEAIHGFSLALIIGILIGTYSSIYVAGALAVAMGLDRK 291


>gi|254374502|ref|ZP_04989983.1| preprotein translocase [Francisella novicida GA99-3548]
 gi|151572221|gb|EDN37875.1| preprotein translocase [Francisella novicida GA99-3548]
          Length = 314

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 159/300 (53%), Gaps = 3/300 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                   +I F+  + +    S+L  + S+  +FT GLN G+DF GG Q+ +  +    
Sbjct: 1   MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648
            S   +   +    + +     G+ N  +        +     + +  +    ++     
Sbjct: 61  DSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVENSLD 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           + +Q+   +GP++ +EL   G++ +I++ + +LIYI  RF+  F + A   L+ D    L
Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N +    + +  +++++SIN+T
Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNANVVEVVNRSINDT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS    + V+ + ++GGS + +F++ +  GIVV   SSI++A  + + +   R 
Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 299


>gi|127513262|ref|YP_001094459.1| preprotein translocase subunit SecF [Shewanella loihica PV-4]
 gi|126638557|gb|ABO24200.1| protein translocase subunit secF [Shewanella loihica PV-4]
          Length = 315

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 170/299 (56%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I F+R       +S++  I S+  L  +G+N+G+DF GG  + +    PV
Sbjct: 1   MFEILSIKGTINFLRHAVAISALSLILVIGSLASLAVNGINWGLDFTGGTVVEMEFKNPV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL+ +R+ L S +      QNF   ++ L+RL  + G        +  V +   ++ P  
Sbjct: 61  DLNQLRAALTSDETDGAVVQNFGSSRDVLIRLPVKEGVKSDLQ--VAHVMEAAAKVDPGV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           + +  E VGP++ +EL  +G + V+++ I +LIY+  RF+W  ALG++  L  D+  TLG
Sbjct: 119 SQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLALGSVAALAHDVIITLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+LF +EF+LT +A VLT++GYS+ND +VV+DR+R+N        +  ++++ SI +T+
Sbjct: 179 VFSLFQLEFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKG-TPEEVVNNSITQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T+    + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAVKLGINRE 296


>gi|152991208|ref|YP_001356930.1| preprotein translocase subunit D [Nitratiruptor sp. SB155-2]
 gi|151423069|dbj|BAF70573.1| preprotein translocase subunit D [Nitratiruptor sp. SB155-2]
          Length = 520

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 175/542 (32%), Positives = 296/542 (54%), Gaps = 34/542 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   W  +L+  +  +G+ +++P+ L               +I+LGLDL+GG H++L V
Sbjct: 1   MRWTNWRFVLFVAVFIVGIALSVPSILGLKSGP---------KITLGLDLQGGLHMLLGV 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D    +   ++  +  ++ F ++  I +  ++    KI  +  D      I + +     
Sbjct: 52  DTKKAIESKIKSIASSIKYFSEQNDILLEDLKIGDKKIEFTLLDKDDAPKIEEFIQK--- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                     +  +++       ++ L+   I+ +  +AI+Q+++ IR R+DQ G++E T
Sbjct: 109 ----------EPGIVIKKEGLHYTLTLTPKEIESIKEYAIKQAVDTIRNRLDQFGLAEPT 158

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMS--------FHKVLPNNSKKGFMFG 229
           + + G  +IL++LPG + P    R+R+L+   A +           +V     ++   +G
Sbjct: 159 VAKQGKDKILVELPGIKTPEQEQRVRKLIAKAAHLQLMAVDEARQARVDTMTPEEAAEYG 218

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L+D  G +YLV++   + G  +  A   FD    +PV++ + +  GAR F + T  N
Sbjct: 219 DVILKDRHGRKYLVKEIPILDGSMIKDARVAFDQNN-QPVINFTLNSEGARIFGDFTAKN 277

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK LAVVLD  + +APVI + I  G  QISG FT+  A  +A  LR+G+L   + + E+
Sbjct: 278 VGKRLAVVLDNVIYSAPVIRERIGGGSGQISGGFTVAEAHDVAIALRSGALLAPVYMEEK 337

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R++G  LG+DSI +   A+V+G VL+VLFMI  YG  G++AD ++  N+ L + +++L G
Sbjct: 338 RSIGPSLGADSIRQSLIALVSGFVLVVLFMIFYYGIAGIIADIALVANLFLIIGVMALFG 397

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+N+++NERIRE  R+  S+  +++ G+  A S I D+NIT
Sbjct: 398 ATLTLPGMAGIVLTVGMAVDANVIINERIRELLREGVSIKKAIEQGYKNAMSAILDANIT 457

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
            LIA VVL+ +G G ++GFAITM + IL SM TAI     +   ++   +          
Sbjct: 458 TLIAAVVLYAYGTGPIKGFAITMSIGILASMITAIIGTHGIYEALLPKIERSKNLKTWFG 517

Query: 530 RF 531
             
Sbjct: 518 IK 519



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 87/184 (47%), Gaps = 4/184 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++    +GP +  + IR+ ++ ++   + +++++   +     + A   L+ ++   +G
Sbjct: 333 YMEEKRSIGPSLGADSIRQSLIALVSGFVLVVLFMIFYYGI-AGIIADIALVANLFLIIG 391

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             ALFG    L  +A ++  +G +V+  V++ +R+R+ ++     +S +  I++     +
Sbjct: 392 VMALFGATLTLPGMAGIVLTVGMAVDANVIINERIRELLRE---GVSIKKAIEQGYKNAM 448

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  ++   I+ + +  +G   I  FAI M+ GI+ +  ++I     I   +     +
Sbjct: 449 SAILDANITTLIAAVVLYAYGTGPIKGFAITMSIGILASMITAIIGTHGIYEALLPKIER 508

Query: 830 NARI 833
           +  +
Sbjct: 509 SKNL 512


>gi|225848937|ref|YP_002729101.1| protein-export membrane protein SecF [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644276|gb|ACN99326.1| protein-export membrane protein SecF [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 308

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 162/303 (53%), Gaps = 2/303 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               + +   I F++ R  G  IS    + S+ L FT G N G+DF GG  + V  N+PV
Sbjct: 1   MRNFLVEAPNIDFLKIRKIGYLISFSLLVISLFLFFTKGFNLGLDFTGGTSVQVKFNQPV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +S +R  L+ +++ D   Q    EK   + ++       +   V  + K    +     
Sbjct: 61  KISDIRPLLKEVKLDDALIQEVGTEKK-EIEIRVSTKKGSSSMVVENIKKALDGKYKGQY 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I+  E +   +  E+ R  I  +    + +L+++  R++  FA+ A+  L  D   TLG
Sbjct: 120 EIRKIEFIDALVGSEMARASIYSIAFVFLGILLFVGYRYEPLFAIAAVIPLFHDAIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L G E +LT VAA+LT++GYS+ND ++V+DR+R+N+K      + R +I+KSINE L
Sbjct: 180 LFSLIGREIDLTVVAAILTVLGYSLNDTIIVFDRIRENIKQRGKK-NLRTIINKSINENL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           GR++ TS  +  SVL +  +GG  + SFA+ +  GIV    SSI++AAP++L + +    
Sbjct: 239 GRTIITSGTSLFSVLALYFFGGESLNSFALALLIGIVFGTYSSIYVAAPLILEVENLLRS 298

Query: 830 NAR 832
             +
Sbjct: 299 RVK 301


>gi|209520464|ref|ZP_03269224.1| protein-export membrane protein SecF [Burkholderia sp. H160]
 gi|209499109|gb|EDZ99204.1| protein-export membrane protein SecF [Burkholderia sp. H160]
          Length = 316

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 156/298 (52%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS++  + ++  L   GL+  ++F GG  + V     V 
Sbjct: 1   MEFFRFRKDIPFMQRALIFNAISLITFLAAVFFLVHRGLHLSVEFTGGTVIEVQYPGAVP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   ++ L+RL  +PG + AQ    + V   +    P   
Sbjct: 61  LDPVRNTLGKLGYADAQVQNFGSSRDVLIRLPLKPGLTSAQQS--DQVMGALKADTPEVQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +      ++IY+  RF+W +A+  +   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVAGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVIEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ T     + VL M ++GG  +  FA+ +  GI+    SS+F+AA + +++   R 
Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWLGVKRE 295


>gi|197363358|ref|YP_002142995.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56128694|gb|AAV78200.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094835|emb|CAR60368.1| protein-export membrane protein SecF [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|326622111|gb|EGE28456.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 304

 Score =  213 bits (542), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 87/286 (30%), Positives = 161/286 (56%), Gaps = 1/286 (0%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           MR  FW  GIS L  I +I ++   G N+G+DF GG  + +   +P ++ V+R  L+   
Sbjct: 1   MRWDFWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAG 60

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             +   QNF    + +VR+    G++  Q    ++V          + ++  E VGP + 
Sbjct: 61  YEEPQLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQNAAVKRIEFVGPSVG 120

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            +L + G + ++++ I++L+Y+  RF+W  A G +  L  D+  TLG  +LF IE +LT 
Sbjct: 121 ADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTI 180

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +TL R++ TS    + 
Sbjct: 181 VASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSGTTLVV 239

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R 
Sbjct: 240 ILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 285


>gi|209744144|gb|ACI70379.1| protein-export membrane protein SecD [Escherichia coli]
          Length = 615

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQDSNQLRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612


>gi|238760779|ref|ZP_04621890.1| Protein-export membrane protein secD [Yersinia aldovae ATCC 35236]
 gi|238701002|gb|EEP93608.1| Protein-export membrane protein secD [Yersinia aldovae ATCC 35236]
          Length = 615

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 165/537 (30%), Positives = 288/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 100 VIALNLAPATPTWLARLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LRS L+++ I   ++R++ N  + + F D + +++             S L+   + 
Sbjct: 151 MDTLRSDLREKNIPYATVRKLDNYGVEVRFRDDKTRDDAI-----------SYLSPRHRD 199

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ +     +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 200 LVIGSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNSNVDATVAASGRVPGDSEVKNTREGRPVVLYKRV 319

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 320 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKK 378

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 379 DANGRAILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 438

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM+V Y K+G++A  ++  N++L + ++SLL 
Sbjct: 439 RTIGPTLGSQNITQGLEACLWGLAVSILFMVVYYRKFGVIASIALLANLVLIVGVMSLLP 498

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+N+
Sbjct: 499 GATLTMPGIAGIVLTLAIAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANV 558

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 559 TTLITAIILYAVGTGSIKGFAITTVIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 615



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 75/177 (42%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A   L+ ++   +G  +L  
Sbjct: 440 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASIALLANLVLIVGVMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAIAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI    G+  +  ++I     I+  +Y  +  N 
Sbjct: 556 ANVTTLITAIILYAVGTGSIKGFAITTVIGVATSMFTAIVGTRAIVNLLYGGKRINK 612



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 29/114 (25%), Gaps = 26/114 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  +GLL ALPN   +                          +     
Sbjct: 4   RYPLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                   L    D L      + I   S+      I   F D   +    + +
Sbjct: 42  GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREAL 91


>gi|152978722|ref|YP_001344351.1| preprotein translocase subunit SecF [Actinobacillus succinogenes
           130Z]
 gi|150840445|gb|ABR74416.1| protein-export membrane protein SecF [Actinobacillus succinogenes
           130Z]
          Length = 319

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 156/301 (51%), Gaps = 5/301 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                +      ++FM+ R WG   SIL +      +FT G N+G+DF GG+ +    ++
Sbjct: 8   HEYKGIGLPFKLVRFMQYRKWGYLFSILLTTTCFFFIFTKGFNWGLDFTGGVVIDTHFSQ 67

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  VRS L    I     Q      + ++RL    GD+   T++ E++    T +  
Sbjct: 68  PADLEKVRSALNQNGIESALVQTTGSTSDVMIRLPAAAGDAQIGTKIKEIM----TALDA 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I++ E VGP +  EL +  +   + + + +L Y+ +RF+W    G +  L  D+  T
Sbjct: 124 DIAIKSVEFVGPNVGDELAQSAVYATLTTLVLLLGYVALRFEWRLGAGGVLALAHDVVVT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG F+   IE +LT VAA+L+++GYS+ND +VV+DR+R+N +      S  ++I+ S+ +
Sbjct: 184 LGIFSFLQIEMDLTFVAAILSVVGYSLNDSIVVFDRVRENFRKIRRLES-DEVINISLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS+     V+ +  +GG  I SF++ +  GI     SSI +A  +   +   R
Sbjct: 243 TLSRTMMTSVTTLFVVIALLSFGGPTIYSFSLALLIGIAFGTYSSILVAIALAYDLGLKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|291532255|emb|CBL05368.1| protein translocase subunit secF [Megamonas hypermegale ART12/1]
          Length = 306

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 82/296 (27%), Positives = 143/296 (48%), Gaps = 1/296 (0%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                 +  R     IS L  I S+  + T G N GIDF GG  + +   + V+++ VR+
Sbjct: 1   MARFDIIGKRKIWYAISSLLIIASLFFMVTRGFNMGIDFTGGTIMDLRFEKAVNINDVRA 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L    + + + Q      +              + +  + V   +T+ +    +   E 
Sbjct: 61  VLNEYNLSNSTIQLSGESSSSTESENVMIRTVDLEEQERKEVMAGLTDKLGAYQVLREEK 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  +  ELI   I   IIS + ++ Y+  RF++ F + A+  L  ++   LG FAL   
Sbjct: 121 VGATMGTELIMNAIYATIISWLLIIAYVSYRFEFKFGISAVLGLAHNVIIVLGAFALTQR 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYT 775
           + + + VAA+LT+IGYS+ND +V++DR+R+N+KL+   +    +L++ SI +T+ RS+YT
Sbjct: 181 QIDSSFVAALLTIIGYSINDTIVIFDRIRENLKLHFRKNGDIVELVNTSIYQTMTRSIYT 240

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 +   +  +GG     FA  +  G    A +SIFIA+P+ +    +  K  
Sbjct: 241 VSTVLFATFALYFFGGDTTKDFAFALLIGFFCGAYTSIFIASPLWVTFRRYSDKKR 296


>gi|227327502|ref|ZP_03831526.1| preprotein translocase subunit SecF [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 324

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR       IS L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 7   YNIEQLNHGRKVYDFMRWDTLAFAISGLLIIASIAIMGVRGFNWGLDFTGGTVIEINLEQ 66

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P+DL V+RS+LE+    +   QNF   ++ +VR+    G S  +    +++K        
Sbjct: 67  PIDLDVLRSSLETSGFSEPQVQNFGSSRDVMVRMPPVSG-SENEALGNKVLKVVNDTSQQ 125

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+LIYI  RF+W  A+GA+  L  D   T
Sbjct: 126 HATVKRIEFVGPSVGSDLAQAGALALMSALIAILIYIGFRFEWRLAMGAVLALAHDAIIT 185

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+NDK+VV DR+R+N +       + ++ + S+ +
Sbjct: 186 MGLLSLFSIEVDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKVRRGTPY-EITNISLTQ 244

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS      ++ + V+GG+++  F++ M  G+++   SSI++++ + L +   R
Sbjct: 245 TLHRTIITSATTLAMIVILMVFGGALLHGFSLTMFIGVIIGTISSIYVSSALALKLGMKR 304

Query: 828 A 828
            
Sbjct: 305 E 305


>gi|331676075|ref|ZP_08376787.1| protein-export membrane protein SecD [Escherichia coli H591]
 gi|331076133|gb|EGI47415.1| protein-export membrane protein SecD [Escherichia coli H591]
          Length = 615

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 94/248 (37%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++ +      N    ++ L       G           +  +   
Sbjct: 369 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 428

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++
Sbjct: 429 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANL 487

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+
Sbjct: 488 ILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDE 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +
Sbjct: 545 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 604

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 605 YGGKRVKK 612


>gi|312792816|ref|YP_004025739.1| protein-export membrane protein secf [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179956|gb|ADQ40126.1| protein-export membrane protein SecF [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 310

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 147/303 (48%), Gaps = 9/303 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R +   +SIL  +  +   F  G NY IDF GG  L +  ++      +  
Sbjct: 1   MTKIDFMGKRKYFYIVSILVMVIGLISYFVQGFNYDIDFTGGTVLEINLHKVPTAQEISE 60

Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI------TEIVPL 648
              L     G  +      E    + +         +T + +  + K+         +  
Sbjct: 61  LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKNKTELSKQTRDKLFGEIAKKYNLKK 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + + + VG  +S EL  + I  V+I++I MLIYI IRF++ F   A+  LI D+   L
Sbjct: 121 EDLISYQNVGAVVSSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             + LF I  N T +AA+LT++GYS+ND +VV+DR+R+N ++    +  +DL++ S+N+T
Sbjct: 181 TVYTLFRIPLNSTFIAAILTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +GRS+ T+M+  I ++ +   G   I  FA P+  G++    SSIFIA  +         
Sbjct: 240 IGRSIATAMSVIIVLVVLYFMGVQSIKEFAFPLLIGVISGTYSSIFIATALWFDWELSTR 299

Query: 829 KNA 831
           K  
Sbjct: 300 KKK 302


>gi|269962426|ref|ZP_06176776.1| protein-export membrane protein SecD [Vibrio harveyi 1DA3]
 gi|269832922|gb|EEZ87031.1| protein-export membrane protein SecD [Vibrio harveyi 1DA3]
          Length = 607

 Score =  213 bits (542), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 153/524 (29%), Positives = 272/524 (51%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +   +    +  RS L++  I
Sbjct: 93  NLAPATPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 152

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   +          +           + D       +     +  
Sbjct: 153 RYRAIRPSGTEGVEVLLRNEEQLAEAKATLEKN--------HPDMNFVDSDSNGRYALIA 204

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 205 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264

Query: 206 LGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G     D DG   +++ +V + G  +    ++
Sbjct: 265 LGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD-ASS 323

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    ++ NIGK +A V                       
Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILDKHEE 383

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A + G+V ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 444 MGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 503

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GAV+GFA+T+ + IL SMFTAI   R ++  I   K++  + I
Sbjct: 564 TGAVKGFAVTLSIGILTSMFTAIVGTRCIVNLIYGGKRVDKLSI 607



 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   +  FA
Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     I+  IY  + 
Sbjct: 572 VTLSIGILTSMFTAIVGTRCIVNLIYGGKR 601


>gi|322834076|ref|YP_004214103.1| protein-export membrane protein SecD [Rahnella sp. Y9602]
 gi|321169277|gb|ADW74976.1| protein-export membrane protein SecD [Rahnella sp. Y9602]
          Length = 604

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 167/538 (31%), Positives = 291/538 (54%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L     +          + LGLDLRGG H ++EVD D  ++   + 
Sbjct: 88  FVIALNLAPATPRWLSMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALSKLQEQ 138

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D +RS L+ + I   ++R++ N  + + F D+  +++             S L+   +
Sbjct: 139 TMDNMRSDLRDKNIPYATVRKLDNYGVEVRFRDAATRDSAV-----------SYLSPRHR 187

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             ++  + +  I +V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI++
Sbjct: 188 DLVITNSGDNAIRVVMTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVV 247

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  N        G            DG   ++  +
Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNTNVDASAASTGRVPGDSEVKNMRDGRPVVLYKR 307

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T++   + ++P V+IS D  G       T+DNIGKP+A +      +  
Sbjct: 308 VILTGDHITDSTSS-MDEYNQPQVNISLDSAGGNAMSNFTKDNIGKPMATLFVEYKDSGK 366

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                Q+      +I+G      A  L+ +LRAG+L   + IVE
Sbjct: 367 KDANGRAILAKQEEVINVATIQSRLGNSFRITGVNDPNEARQLSLLLRAGALIAPIQIVE 426

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A + GLV  +LFM+V Y K+G++A  ++  N+IL + ++SLL
Sbjct: 427 ERTIGPTLGMQNITQGLEACLWGLVASILFMVVWYRKFGIIATTALVANLILIVGIMSLL 486

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE +  +SV  ++  G+  A+S+I D+N
Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSVQQAIHEGYKGAFSSIVDAN 546

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           IT LI  ++L+  G G+++GFAIT  + +  SMFT+I   RA++  +   K++K + I
Sbjct: 547 ITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTSIVGTRAIVNLVYGGKRIKKLSI 604



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 79/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +A ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNITQGLEACLWGLVASILFMVVWYR-KFGIIATTALVANLILIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +K      S +  I +         V 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSVQQAIHEGYKGAFSSIVD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+  +  +SI     I+  +Y  +    
Sbjct: 545 ANITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTSIVGTRAIVNLVYGGKRIKK 601


>gi|187477347|ref|YP_785371.1| preprotein translocase subunit SecD [Bordetella avium 197N]
 gi|115421933|emb|CAJ48453.1| protein-export membrane protein [Bordetella avium 197N]
          Length = 626

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 179/518 (34%), Positives = 279/518 (53%), Gaps = 28/518 (5%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             + LL A P ++                + LGLDLRGG H +L+VD    +       +
Sbjct: 110 VALNLLPASPPWMRSL------GWFEPRPMYLGLDLRGGVHFLLQVDMQGALTARYDSLA 163

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            + RS L+ + I   ++ +    I  +F+    ++   + +   +               
Sbjct: 164 ADARSILRDQKIDAVNVERSGQAIVATFSSPELRDRAREALRSRM----------TDLQF 213

Query: 135 LVTTTEKEISI--VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
           +    +    +   LS   I +V   A++Q++  +  RI+++G++E  IQ+ G+ RI++Q
Sbjct: 214 IDRNEDGRFVLDGALSPQAIARVQETALKQNINTLHNRINELGVAEPVIQQQGADRIVVQ 273

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDK 246
           LPG QD ++ ++LLG TA +    V  + + +         FG+    D DG   LV  +
Sbjct: 274 LPGVQDVAKAKELLGRTATLELRMVDDSPAAQAALANGTVPFGLERYSDRDGRPILVRRQ 333

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRV 302
           V ++G +L  A    D +T +P V+++ D  GAR F +VTRDN+GK +         G V
Sbjct: 334 VILTGENLQDAQPGRDHQTQQPSVNLTLDSKGARIFRDVTRDNVGKRIAILLFENGKGEV 393

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +TAPVI   I  G+ QISG+ + E A   A +LRAG+L   ++I+EER +G  LG+D+I 
Sbjct: 394 VTAPVIRSEIGGGQVQISGSMSAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIA 453

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  + + G + I +F+IV Y  +G+ +   +  NV+L LALLS+L ATLTLP IA I L
Sbjct: 454 KGFYSTLYGFIAIAVFIIVYYHLFGVFSTIGLTFNVLLLLALLSMLQATLTLPGIAAIAL 513

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+A+DSN+L+NERIREE R   S   ++  GF RA+ TI DSN+T LI  + L  FG 
Sbjct: 514 TLGMAIDSNVLINERIREELRAGASPQQAIYHGFERAWGTILDSNLTTLIVGLALLAFGS 573

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G +RGFA+   L IL SMF+++  VRA+       +K 
Sbjct: 574 GPIRGFAVVHCLGILTSMFSSVVGVRALANLWYGGRKK 611



 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 85/213 (39%), Gaps = 4/213 (1%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G   A+      +  +   +    +I     +GP +  + I KG    +   IA+
Sbjct: 407 QVQISGSMSAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAI 466

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++I + +   F + +   L  ++   L   ++      L  +AA+   +G +++  V++
Sbjct: 467 AVFIIVYYHL-FGVFSTIGLTFNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDSNVLI 525

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
            +R+R+ ++      S +  I        G  + +++   I  L +  +G   I  FA+ 
Sbjct: 526 NERIREELRA---GASPQQAIYHGFERAWGTILDSNLTTLIVGLALLAFGSGPIRGFAVV 582

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              GI+ +  SS+     +    Y  R K A+I
Sbjct: 583 HCLGILTSMFSSVVGVRALANLWYGGRKKLAKI 615



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 32/128 (25%), Gaps = 29/128 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I   +   IGLL  LPNF  +S                           +++ 
Sbjct: 3   RYPLWKYITVLVAVVIGLLYTLPNFYGESPA-------------------------VQIS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                          +   L    +   S+   QN     I   F  +  +    D +  
Sbjct: 38  SAKATIKVEPSLLPRVEQILADAKLSATSVYYEQNGTLGTIRARFPSTDIQLQARDLLDR 97

Query: 118 FLQGVNSK 125
            L  V   
Sbjct: 98  SLNTVAGD 105


>gi|312128235|ref|YP_003993109.1| protein-export membrane protein secf [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778254|gb|ADQ07740.1| protein-export membrane protein SecF [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 310

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 147/303 (48%), Gaps = 9/303 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R +   +SIL  +  +   F  G NY IDF GG  L +  ++      +  
Sbjct: 1   MTKIDFMGKRKYFYIVSILVMVIGLISYFVQGFNYDIDFTGGTVLEINLHKVPTAQEISE 60

Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--- 651
              L     G  +      E    + +         +T + +  + K+   +        
Sbjct: 61  LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKKKTELSKQTRDKLFAEIAKKYNLKK 120

Query: 652 ---QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + VG  +S EL  + I  V+I++I MLIYI IRF++ F   A+  LI D+   L
Sbjct: 121 EDLISYQNVGAVVSSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVVALIHDLLIVL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             + LF I  N T +AAVLT++GYS+ND +VV+DR+R+N ++    +  +DL++ S+N+T
Sbjct: 181 TVYTLFRIPLNSTFIAAVLTVLGYSINDTIVVFDRIRENRRIAGK-MDLKDLVNLSMNQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +GRS+ T+M+  I ++ + + G   I  FA P+  G++    SSIFIA  +         
Sbjct: 240 IGRSIATAMSVIIVLVVLYIMGVQSIKEFAFPLLIGVISGTYSSIFIATALWFDWELSTR 299

Query: 829 KNA 831
           K  
Sbjct: 300 KKK 302


>gi|88858508|ref|ZP_01133150.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Pseudoalteromonas tunicata D2]
 gi|88820125|gb|EAR29938.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Pseudoalteromonas tunicata D2]
          Length = 315

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 167/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L+     I FM  R   +  S L  + SI  +   GLN+G+DF GG  + V  ++  
Sbjct: 1   MMQLLRVKDTIDFMSIRKLTMAFSALLIVISIISMAVRGLNFGLDFTGGTAVEVGFSQAA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D+  VR +LES    D S Q F   +  LVRL  +  D  A   +   +   I ++ P +
Sbjct: 61  DIDKVRGSLESSGFADASVQLFGSSQEILVRLAPRGADVTAVM-IGNDMMTAIQQVYPDA 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  +L  +G + ++ + I +LIY+ +RF+W FA+GA+  L  D+  T+G
Sbjct: 120 QMRRIEFVGPSVGEDLKEQGGLAMLTALICILIYVAMRFEWRFAVGAVLALGHDVIITMG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++ G+EF+LT +AA+L +IGYS+ND +VV DR+R+N +         ++I+ S+ +TL
Sbjct: 180 LFSILGLEFDLTVLAAILAVIGYSLNDTIVVSDRIRENFRK-VRIDDTIEIINISLTQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TSM   + ++ + +WGG +I  FA  +  G+ +   SS+++A+ I + +   + 
Sbjct: 239 NRTLMTSMTTLVVLVALFIWGGQIIHGFATALLIGVFIGTYSSVYVASSIAISLGISKE 297


>gi|317403821|gb|EFV84298.1| acriflavine resistance protein B [Achromobacter xylosoxidans C54]
          Length = 1060

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 182/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L     +  + ++P+  P            G  +      
Sbjct: 8   RPVFAWVIAIVLMMAGALSIL-----KLPVSQYPNIAPPAI---------GIAVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L              +  ITL+F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQMNGLDGLEYISSGSNSDGSMSITLTFRQGTNPDTAQVQVQNKLSL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  ++++            + +  +     D I  ++   
Sbjct: 114 AQPLLPQEVQQQGIRVTKATKNFLIVAGFVSTDGTMTKDDLADYVASYVQDPISRTQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     TT  +       N        G            
Sbjct: 174 DFQLFGSQ-YAMRIWLDPAKLVNYGLTTVDVVNAIKEQNVQVSSGQLGGLPAVRGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +              K       +        +        I           
Sbjct: 233 TIIGPSRL-------------EKPEDFGRILLKVNADGSQVRLANVARIELGGQTYAIDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L+    P    +           S   
Sbjct: 280 YYNGKPASGLAIKLAPGANALDTAQAVRDTINNLKPYFPPGMDVVYPYDTTPFVSLSIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VFKTLVEAIILVFLVMYLFLQNFRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  +   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLTPKQATRKSMTQITGALIGIAMVLAAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  S+++S+  AI    A+   +           +       +   
Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVIVAIVFTPALCATLLKPIPKGHHGTKRGFFGWFNRAF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   + +A    R +   V    +                  + +G +   +    
Sbjct: 520 DRSSHGYANTVARGLGRTKRLMVVYLAIVIAMGWMFTRIPTAFLPAEDQGILFAQIQTPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  ++ ++      ++ +       F V      G     + +   ++        
Sbjct: 580 GATAERTKAVIDEATNYLLTEEKDAVTSVFAVNGFNFGGRGQNASILFIKLRDWEDRGDA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
                          R+  R  ++ V+
Sbjct: 640 KLKAAAVAARANAHFRKTERDAMLFVV 666



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 83/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L+ V       Q   I         + L        +++   + +      +    
Sbjct: 258 SQVRLANVARIELGGQTYAIDSYYNGKPASGLAIKLAPGANALDTAQAVRDTINNLKPYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I +    ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PPGMDVVYPYDTTPFVSLSIEEVFKTLVEAIILVFLVMYLFLQNFRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    ++ +    KS+
Sbjct: 378 GTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLTPKQATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +M      +PMA +GGS       F+I +   +V++   +I     +   
Sbjct: 436 TQITGALIGIAMVLAAVFIPMAFFGGSTGVIYRQFSITIVSSMVLSVIVAIVFTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              E  G      L       +  IS I + + +   ++ W      +  + L I   LG 
Sbjct: 855  GFEWTGMSFEERLSGAQAPALYAISLIVVFLCLAALYESWTIPSAVMLVVPLGIIGALGA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+  ++     +LT IG +  + +++ +  ++    Y    S  +    +  + L 
Sbjct: 915  TMLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKE---HYEAGASLTESAIHAARQRLR 971

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + TS+A  + V+P+A+    G     +    +  G++ A   +IF      + +    
Sbjct: 972  PILMTSLAFILGVVPLAISSGAGSGSQNAIGTGVIGGMLTATFLAIFFVPAFFVIMLRLF 1031

Query: 828  A 828
             
Sbjct: 1032 K 1032


>gi|206890659|ref|YP_002248128.1| protein-export membrane protein SecD [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742597|gb|ACI21654.1| protein-export membrane protein SecD [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 540

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 182/558 (32%), Positives = 300/558 (53%), Gaps = 51/558 (9%)

Query: 1   MRNNP-WLVILYSMICCIGLLIALPN--FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           MR      + L +    + ++  LPN           +   +P   I LGLDLRGGSHL+
Sbjct: 1   MRKGIYLRIALIAFTVILAIIFFLPNTPLFSYMP-GWWKKNLPHKGIVLGLDLRGGSHLI 59

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
            EVD        ++     L+S L+K+G+   S++    KI +          + + V  
Sbjct: 60  FEVDLKRAREITVERIGMHLQSLLEKKGLK-PSVKVQGEKIFIQ--------PVNEDVKK 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L         ++     I   L +    +V + ++EQ++E+IR RIDQ+G++
Sbjct: 111 IIKENYADL--------SISEHGGNIICELPETAFKRVETTSVEQAIEVIRNRIDQLGVA 162

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E  I + G + I++QLPG +DP +  +++G TA++ F  +    +    +  +    + D
Sbjct: 163 EPAIHKQGENEIVVQLPGVKDPKKALEIIGKTAQLEFKLLDEETTLWKQLPSLIKAGEED 222

Query: 238 ------------------------------GNQYLVEDKVEISGIHLNGATANFDPKTHK 267
                                            Y+V+  V ++G  L  A  + D + ++
Sbjct: 223 TFLNQWKSKLPESDEIVFQKIVNKETGEVYKRPYIVKKDVLLTGDLLAEAHVSIDQRFNE 282

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
           P V + F++ GA+ F ++T   + + LA++LDG + +APVI + I  G AQISG+FT+E 
Sbjct: 283 PYVSLRFNDAGAKIFEDITGKYVKRRLAIILDGNLYSAPVIQEKIEGGNAQISGSFTLEE 342

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  LA +LRAG+LP  + +++   VG  LG DSI  G  A++   + + LFMI+ Y   G
Sbjct: 343 AKDLAIVLRAGALPAPVKLIQNVTVGPTLGKDSIEAGKMAVIIASIFVSLFMIIYYRLSG 402

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           ++ADF++ LN+IL +  L+ L ATLTLP IAGI L +G+AVDSN+L+ ERIREE R  ++
Sbjct: 403 VIADFALILNIILLIGALAALNATLTLPGIAGIALAVGMAVDSNVLMFERIREELRLGKT 462

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
              +++ G+ +A+ TIFDS++T LI   VLF FG G ++GFA+T+ L + I++FTA+   
Sbjct: 463 PKAAIETGYKKAFWTIFDSHVTTLITAAVLFHFGSGPIKGFAVTLSLGVAINLFTALIGT 522

Query: 508 RAMMIFIIRYKKMKSIDI 525
           + +  FI   K+ KS+ I
Sbjct: 523 KTVFDFIYIGKERKSLSI 540



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 84/179 (46%), Gaps = 4/179 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
               VGP + ++ I  G + VII++I + +++ I ++    + A   LIL+I   +G  A
Sbjct: 363 QNVTVGPTLGKDSIEAGKMAVIIASIFVSLFMIIYYRLS-GVIADFALILNIILLIGALA 421

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                  L  +A +   +G +V+  V++++R+R+ ++L     + +  I+    +     
Sbjct: 422 ALNATLTLPGIAGIALAVGMAVDSNVLMFERIREELRL---GKTPKAAIETGYKKAFWTI 478

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             + +   I+   +  +G   I  FA+ ++ G+ +   +++     +  FIY  + + +
Sbjct: 479 FDSHVTTLITAAVLFHFGSGPIKGFAVTLSLGVAINLFTALIGTKTVFDFIYIGKERKS 537


>gi|320643777|gb|EFX12900.1| preprotein translocase subunit SecD [Escherichia coli O157:H- str.
           493-89]
 gi|320649128|gb|EFX17706.1| preprotein translocase subunit SecD [Escherichia coli O157:H- str.
           H 2687]
          Length = 604

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQDSNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601


>gi|149908736|ref|ZP_01897397.1| protein export protein SecF [Moritella sp. PE36]
 gi|149808278|gb|EDM68217.1| protein export protein SecF [Moritella sp. PE36]
          Length = 314

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 164/299 (54%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F +I     I FM+       +S L  I SI  +   G+N+G+DF GG  + V  ++P 
Sbjct: 1   MFEIIKTKRTIHFMKMTKPAFILSALLVILSISSIAIKGINWGLDFTGGTVIEVGYDKPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL ++R  L +    D   Q+F   ++ L+RL  + G       +   V   +       
Sbjct: 61  DLEIIRPLLSAEGFDDAVIQHFGSSRDVLIRLAPREGLDN--EHLGSQVITALQGYDKSV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL  +G + ++ + I +L+Y+ +RF+W  A GA+  L  D+  TLG
Sbjct: 119 EMRRIEFVGPNVGDELAEQGGLALLAALICILLYVGVRFEWRLASGAVLALAHDVIITLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  IEF+LT +AA+LT+IGYS+ND +VV+DR+R+N +         +++D S+ +TL
Sbjct: 179 IFSVLQIEFDLTILAALLTVIGYSLNDTIVVFDRIRENFRRM-RIDDAVEIMDVSLTQTL 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS    + ++ + + GG++I  FA+ +  G+VV   SSI++A+ + L +   R 
Sbjct: 238 SRTLITSGTTLMVLVSLFLKGGALIHGFALALLIGVVVGTYSSIYVASALALRLGVCRE 296


>gi|188997668|ref|YP_001931919.1| protein-export membrane protein SecF [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932735|gb|ACD67365.1| protein-export membrane protein SecF [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 307

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 163/303 (53%), Gaps = 2/303 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               + +   I F++ R  G GIS+   I S  L FT G N G+DF GG  + V  N+ +
Sbjct: 1   MRNFMVEPPNIDFLKIRKIGYGISLSLLILSFVLFFTKGFNLGLDFTGGTSIQVKFNQQI 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +S +R+ L+ + + D   Q     K+  V ++       +   + ++ K   ++     
Sbjct: 61  RVSDIRNLLKDVDLADSLIQEVGTNKD-EVEIRVPAKKGSSSVVLEKVKKALDSKYQGQY 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I+  E +   +  E+ +  +  ++   + +L+++  R++  FA+ A+  L  D   TLG
Sbjct: 120 EIRKVEFIDALVGSEMAKASVYSMVFVMLGILLFVGYRYEPLFAIAAVIPLFHDAIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L G E +LT +AA+LT++GYS+ND ++V+DR+R+N+K      +   +I++SINE L
Sbjct: 180 IFSLLGKEIDLTVIAAILTVLGYSLNDTIIVFDRIRENIKARGRK-NMESIINRSINENL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ TS  A  SV+ +  +GG  + +FA+ +  GIV    SSI++AAP++L +      
Sbjct: 239 ARTIITSGTALFSVIAIYFFGGESLQNFALALLIGIVFGTYSSIYVAAPLILEVEKILRA 298

Query: 830 NAR 832
            A+
Sbjct: 299 KAK 301


>gi|84387609|ref|ZP_00990626.1| protein export protein SecD [Vibrio splendidus 12B01]
 gi|84377454|gb|EAP94320.1| protein export protein SecD [Vibrio splendidus 12B01]
          Length = 618

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 154/524 (29%), Positives = 274/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L++E I
Sbjct: 104 NLAASTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMQKLVGQQEEAFRSELREEKI 163

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   +          +    Q        D       +     +  
Sbjct: 164 RYRAIRPSGKDAVEVILRNEEQLAEAKSLLQSKHQ--------DMTFVDSESNGRFSLVA 215

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             +   + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 216 RFTDARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275

Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V  +             G    +D DG   +++ +V + G  +    ++
Sbjct: 276 LGATATLEFREVDSSADLAAAASGRAPAGSEIKQDRDGRPVVLKKRVILGGSSITD-ASS 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    +R NIGK +A V                       
Sbjct: 335 SVDEYGRPQVNISLDSEGGSKMSTFSRQNIGKLMATVFAEYKDSGRKTPEGRVILSKHEE 394

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 395 VINQATIQSALGRNFRITGIDSTAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A+V G+  ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 455 MGIMAMVWGMAAVMLFTLLYYRTFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 514

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT L+  ++LF  G
Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLLTAIILFAVG 574

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + IL SMFTAI   R ++  +   K++K + I
Sbjct: 575 TGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLMYGGKRVKKLSI 618



 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 90/213 (42%), Gaps = 5/213 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G           +  +   ++   +I     +GP + ++ I  GI+ ++    A
Sbjct: 407 RNFRITGIDSTAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIMAMVWGMAA 466

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 467 VMLFTLLYYR-TFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   ++ + +   G   I  FA
Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLLTAIILFAVGTGAIKGFA 582

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++ GI+ +  ++I     I+  +Y  +    
Sbjct: 583 VTLSIGILTSMFTAIVGTRCIVNLMYGGKRVKK 615


>gi|94986493|ref|YP_594426.1| preprotein translocase subunit SecD [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730742|emb|CAJ54104.1| Preprotein translocase subunit SecF [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 527

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 189/535 (35%), Positives = 284/535 (53%), Gaps = 20/535 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M++ PW + +   I  + ++  LP+  P          +P  +I+LGLDL+GG HL L V
Sbjct: 1   MKSLPWRITISLFILILSIIYVLPSI-PFIDNSIIGKYLPDTKINLGLDLKGGIHLTLGV 59

Query: 61  DEDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           D +  V+  L +   +LRS        I    +        L F   R ++         
Sbjct: 60  DVNTAVSNALVLTGQDLRSTASKNGLTILKTKITPDG---QLEFLLPRKEQE-----NDL 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            + +                   +     +Q     + + A+EQ++  IR RIDQ G+SE
Sbjct: 112 EELIVKSYPQLVLSKPTTIDGSLKYYAHFTQQAKISIENMALEQAIRTIRNRIDQFGVSE 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR------- 231
             I++  + RI IQLPG  D +R   L+G TA ++FH V  +  +   +           
Sbjct: 172 PDIRKQDNFRIQIQLPGLTDSTRAIHLIGQTAHLTFHIVRDDLQQNTPLPSGVRLFPQVI 231

Query: 232 --FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                 S      +E +  ++G +++ A  NFD K +K  V +SF+  GA+ F  +T +N
Sbjct: 232 FYPDGTSREILIPLEREPVMTGENISDARPNFDDKNNKAYVALSFNSQGAKMFERITAEN 291

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           I K +A+VLDG++ +AP I + I  GKA ISGNFT+  A  L+ +LRAGSLP  + I+EE
Sbjct: 292 IKKRMAIVLDGKIYSAPTIQERISGGKASISGNFTMAEAQDLSIILRAGSLPAPVTILEE 351

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R+VG  LG +SI KG  A + G   +++ M + YG  GL+AD  +   + L LA L+  G
Sbjct: 352 RSVGPSLGEESIEKGMLAAIVGGFAVLIIMPLYYGLSGLLADVMLLFTMTLLLAGLAAFG 411

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP IAGIVL IG++VD+N+L+ ERIREE +K      ++  GF RA  +I DSN+T
Sbjct: 412 ATLTLPGIAGIVLTIGMSVDANVLIFERIREELKKGLMPLKAVIAGFDRASISIMDSNVT 471

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            +IA  +L+ FG G VRGFA+T+ L I+ SMFTAI +     +  +R  K K++ 
Sbjct: 472 TIIAAAILYQFGTGPVRGFAVTLSLGIIASMFTAIFVSYTCFLLWLRKSKKKTLS 526



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 80/175 (45%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  E I KG++  I+   A+LI + + +     L A   L+  +T  L   A FG
Sbjct: 353 SVGPSLGEESIEKGMLAAIVGGFAVLIIMPLYYGLS-GLLADVMLLFTMTLLLAGLAAFG 411

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG SV+  V++++R+R+ +K     +     +    +      + +
Sbjct: 412 ATLTLPGIAGIVLTIGMSVDANVLIFERIREELK---KGLMPLKAVIAGFDRASISIMDS 468

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++   I+   +  +G   +  FA+ ++ GI+ +  ++IF++    L       K 
Sbjct: 469 NVTTIIAAAILYQFGTGPVRGFAVTLSLGIIASMFTAIFVSYTCFLLWLRKSKKK 523


>gi|302342507|ref|YP_003807036.1| protein-export membrane protein SecF [Desulfarculus baarsii DSM
           2075]
 gi|301639120|gb|ADK84442.1| protein-export membrane protein SecF [Desulfarculus baarsii DSM
           2075]
          Length = 408

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 160/349 (45%), Gaps = 50/349 (14%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPV 589
             LI   I I F+  R+     S L  + ++ +L  +G   YG+DF GG+ + V  N+  
Sbjct: 1   MELIRPDINIDFIGKRYLAFAASGLLILMTVIVLAINGGPRYGVDFAGGVLVQVRFNKAT 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL- 648
           D   ++  L  L + D + Q F G+      ++ +  D        ++ +          
Sbjct: 61  DAGQIKKALAPLGMADATVQFFGGDDKREFLVRTEKQDMDMTGLGDKINQTLAQAYGQGE 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK------------------- 689
             ++  E+VGPK+  +L  K ++ ++ S + + +YI  RF+                   
Sbjct: 121 FEVRRVEMVGPKVGHDLREKALLAILYSILMIAVYISGRFEGKWALAGLMAAVLVGVTLL 180

Query: 690 -----------------------------WYFALGAITTLILDITKTLGFFALFGIEFNL 720
                                          +ALGAI  L+ D+  T+G F+L   EF L
Sbjct: 181 VEAISGGAGAVTLIVIAMAVTMAACWYLKLRYALGAIVALLHDVIITVGVFSLLDKEFTL 240

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             VAA+LT+IGYS+ND ++V+DR+R+N+            I+ S+N+TL R++ TS    
Sbjct: 241 ATVAAILTIIGYSLNDTIIVFDRIRENLTKSGGGGDLAQTINASVNQTLSRTILTSGTTL 300

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + ++ +   GG VI  FA+ +  GI V   SS+F+A+P+LL + + + +
Sbjct: 301 MVLVCLWALGGGVIEDFALALLVGIGVGTYSSVFVASPVLLLLPEGKPR 349


>gi|238752764|ref|ZP_04614233.1| Protein-export membrane protein secD [Yersinia rohdei ATCC 43380]
 gi|238709022|gb|EEQ01271.1| Protein-export membrane protein secD [Yersinia rohdei ATCC 43380]
          Length = 604

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 161/524 (30%), Positives = 285/524 (54%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    PS + K     + LGLDLRGG H ++EVD D  +    +   D LR+ L+++ I
Sbjct: 93  NLAPATPSWLAKLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRTDLREKNI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R++ N  + + F D + +++    ++   +             ++ +     +  
Sbjct: 153 PYATVRKLDNYGVEVRFRDDKTRDDAISYLSSRHR-----------DLVIGSNGSNALKA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S + + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++
Sbjct: 202 VMSDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N        G            +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNSNVDATVAASGRVPGDSEVKSTREGRPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D    +  V+IS D  G       T+DNIGKP+A +      +                
Sbjct: 322 TDEYN-QAQVNISLDSAGGSLMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 380

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LGS +I 
Sbjct: 381 VINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNIT 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GL + +LFM++ Y K+G++A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 441 QGLEACLWGLAVSILFMVIYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE R  ++V  ++  G+  A+S+I D+N+T LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEEYRNGRTVQQAIHEGYKGAFSSIVDANVTTLITAIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT  + ++ SMFTAI   RA++      K++  + I
Sbjct: 561 TGSIKGFAITTAIGVITSMFTAIVGTRAIVNLFYGGKRINKLSI 604



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 77/177 (43%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ I ++  F + A T L+ ++   +G  +L  
Sbjct: 429 TIGPTLGSQNITQGLEACLWGLAVSILFMVIYYR-KFGVIASTALLANLVLIVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTVQQAIHEGYKGAFSSIVD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G++ +  ++I     I+   Y  +  N 
Sbjct: 545 ANVTTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLFYGGKRINK 601


>gi|238755135|ref|ZP_04616482.1| Protein-export membrane protein secD [Yersinia ruckeri ATCC 29473]
 gi|238706695|gb|EEP99065.1| Protein-export membrane protein secD [Yersinia ruckeri ATCC 29473]
          Length = 604

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 162/537 (30%), Positives = 289/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 89  VIALNLAPATPTWLARLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D +RS L+++GI   ++R++ N  + + F D + ++     ++   +            
Sbjct: 140 MDTMRSDLREKGIPYAAVRKLDNYGVEVRFRDDKARDEAISYLSSRHR-----------D 188

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ +     +  V+S + + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++
Sbjct: 189 LVINSNGSNTLKAVMSDDRLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVE 248

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNTNVDGSVAASGRVPGDSEVKNTREGRPVVLYKRV 308

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 309 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKK 367

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 368 DANGRAILVKQEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEE 427

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM+V Y K+G++A  ++  N++L + ++SLL 
Sbjct: 428 RTIGPTLGSQNITQGLEACLWGLAVSILFMVVYYRKFGVIASTALLANLVLIVGVMSLLP 487

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE +  +S+  ++  G+  A+S+I D+N+
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEFKNGRSIQQAIHEGYKGAFSSIIDANV 547

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 429 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++  K      S +  I +         + 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEFK---NGRSIQQAIHEGYKGAFSSIID 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G++ +  ++I     I+  +Y  +  N 
Sbjct: 545 ANVTTLITAIILYAVGTGSIKGFAITTAIGVITSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|170767664|ref|ZP_02902117.1| protein-export membrane protein SecD [Escherichia albertii TW07627]
 gi|170123152|gb|EDS92083.1| protein-export membrane protein SecD [Escherichia albertii TW07627]
          Length = 604

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 291/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D+  ++     ++                 ++ +    ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDANTRDEAIAYLSKR-----------HPDLVISSQGSNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNIDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLLVSILFMILFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++ +      N    ++ L       G +         +  +   
Sbjct: 358 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   +  ++++ + +K  F L A + LI ++
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMILFYK-KFGLIATSALIANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+
Sbjct: 477 ILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +
Sbjct: 534 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 594 YGGKRVKK 601


>gi|157146976|ref|YP_001454295.1| preprotein translocase subunit SecD [Citrobacter koseri ATCC
           BAA-895]
 gi|157084181|gb|ABV13859.1| hypothetical protein CKO_02753 [Citrobacter koseri ATCC BAA-895]
          Length = 604

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 290/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIKAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++   +             ++ +     +  
Sbjct: 153 PYTTVRKEDNYGLSITFRDNKARDEAISYLSGRHR-----------DLVITSQGNTVLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYKGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 79/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYKGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +  N 
Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|261494986|ref|ZP_05991455.1| preprotein translocase subunit SecF [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309395|gb|EEY10629.1| preprotein translocase subunit SecF [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 324

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 96/293 (32%), Positives = 161/293 (54%), Gaps = 4/293 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM+ R+ G   S++ +   I  + T G N+G+DF GG  +    ++P DL+ +R
Sbjct: 16  PYKLIPFMKYRYVGFIFSLIVTALCIFTIATKGFNWGLDFTGGTVIETQFSQPADLAKLR 75

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + LE+   G+   Q    +K+ ++RL    G+     +V+EM+ +K+    P +TI++ E
Sbjct: 76  TELENSGYGNALVQTTGSQKDLMIRLAASAGNMSVGNKVMEMIHQKL---DPNATIKSIE 132

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + +   +LIY+  RF+W  A+G I  L  D+  T+G F+   
Sbjct: 133 FVGPNVGEELTQGAIYATLATLAMLLIYVGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQ 192

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N      S S   +    +++TL R++ T
Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKVRRSSSIEIIDIS-LSQTLSRTLMT 251

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S+     VL +   GG  + SF++ +  GI     SSI+IA  + L +   R 
Sbjct: 252 SVTTLFVVLALFYLGGPTLHSFSLALLIGIGFGTYSSIYIAIGVALQLGLKRE 304


>gi|237756763|ref|ZP_04585258.1| protein-export membrane protein SecF [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691079|gb|EEP60192.1| protein-export membrane protein SecF [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 307

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/304 (30%), Positives = 163/304 (53%), Gaps = 3/304 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               + +   I F++ R  G GIS+   I S  L FT G N G+DF GG  + V  N+ +
Sbjct: 1   MRNFMVEPPNIDFLKIRKIGYGISLSLLILSFVLFFTRGFNLGLDFTGGTSIQVKFNQQM 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +S VR+ L+ + + D   Q     K+  V ++       +   + ++ K   ++     
Sbjct: 61  RVSDVRNLLKDVDLADSLIQEVGTNKD-EVEIRVPAKKGSSSVVLEKVKKALDSKYQGRY 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I+  E +   +  E+ +  +  +I   + +L+++  R++  FA+ A+  L  D   TLG
Sbjct: 120 EIRKVEFIDALVGSEMAKASVYSMIFVMLGILLFVGYRYEPLFAIAAVIPLFHDAIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L G E +LT +AA+LT++GYS+ND ++V+DR+R+N+K      +   +I++SINE L
Sbjct: 180 IFSLLGKEIDLTVIAAILTVLGYSLNDTIIVFDRIRENIKARGRK-NMESIINRSINENL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD-WRA 828
            R++ TS  A  SV+ +  +GG  + +FA+ +  GIV    SSI++A P++L +    R 
Sbjct: 239 ARTIITSGTALFSVIAIYFFGGESLQNFALALLIGIVFGTYSSIYVAGPLILEVEKILRE 298

Query: 829 KNAR 832
           K  +
Sbjct: 299 KTKK 302


>gi|121998475|ref|YP_001003262.1| preprotein translocase subunit SecD [Halorhodospira halophila SL1]
 gi|121589880|gb|ABM62460.1| protein-export membrane protein SecD [Halorhodospira halophila SL1]
          Length = 618

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 162/522 (31%), Positives = 279/522 (53%), Gaps = 36/522 (6%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +   P  +       + LGLDLRGG H +L+VD D  V   ++ +  ++R+  ++E I  
Sbjct: 105 VPATPQWLRAMGAEPMFLGLDLRGGVHFLLQVDIDAMVGETMEGHQQDIRTLFREERIRF 164

Query: 89  FSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
            ++    + +I ++FAD          +         +       +         +   +
Sbjct: 165 SALEVTDEQQIRMAFAD--------TDLRARALEALEEHIEGLNYSEEEDEDTYTLIASM 216

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
            +  + ++   A++Q++  +R R+D++G++E  IQR G+ RI++QLPG QDP + +++LG
Sbjct: 217 DEEELQEMKDLAVQQNITTLRNRVDELGVAEPVIQRQGADRIVVQLPGIQDPGQAKEILG 276

Query: 208 TTAKMSFHKVLPNNSK-----KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            TA + F  V   N            G       DG    +E +  +SG  +  A++ FD
Sbjct: 277 ATATLEFRFVDHANFPFTGDPDDPPEGSEVFPQRDGGYVALERQRILSGDRIIDASSGFD 336

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI---------- 312
            ++  P V+I     G R     TRD +G  +AV+   R+    +++             
Sbjct: 337 QESGSPEVNIRLSGTGGRIMNRATRDRVGDHMAVLFQERISETQMVDGEPERVIRELEEV 396

Query: 313 ---------PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       + +I+G  + + A  LA +LRAG+L   ++IVEER +G  LG++++ +
Sbjct: 397 ISVARIREGLGSRFRITGLDSSQEASNLALLLRAGALAAPIDIVEERTIGPSLGAENVER 456

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  A+V G +L++ FM + Y  +GLVA+ ++  N+++ +A+LS+L ATLTLP IAGIVL 
Sbjct: 457 GFMAVVIGFLLVIAFMALYYRTFGLVANLALLSNLVIIVAVLSMLQATLTLPGIAGIVLT 516

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+ +RIREE +    +  ++D G+ +A STI D+N+T LIA +VLF FG G
Sbjct: 517 VGMAVDANVLIFQRIREELKAGAPIQTAIDAGYGKALSTIADANVTTLIAALVLFLFGTG 576

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            V+GFA+T+ + +  SMFTAI   RA++  I   +K+  + I
Sbjct: 577 PVQGFAVTLAIGLATSMFTAIVGTRAVINLIYGGRKVSELKI 618



 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 87/201 (43%), Gaps = 4/201 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             +Q      +  +   +     I     +GP +  E + +G + V+I  + ++ ++ + 
Sbjct: 416 DSSQEASNLALLLRAGALAAPIDIVEERTIGPSLGAENVERGFMAVVIGFLLVIAFMALY 475

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F L A   L+ ++   +   ++      L  +A ++  +G +V+  V+++ R+R+ 
Sbjct: 476 YR-TFGLVANLALLSNLVIIVAVLSMLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREE 534

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +K        +  ID    + L      ++   I+ L + ++G   +  FA+ +A G+  
Sbjct: 535 LKA---GAPIQTAIDAGYGKALSTIADANVTTLIAALVLFLFGTGPVQGFAVTLAIGLAT 591

Query: 808 AASSSIFIAAPILLFIYDWRA 828
           +  ++I     ++  IY  R 
Sbjct: 592 SMFTAIVGTRAVINLIYGGRK 612


>gi|16126233|ref|NP_420797.1| protein-export membrane protein SecF [Caulobacter crescentus CB15]
 gi|13423457|gb|AAK23965.1| protein-export membrane protein SecF [Caulobacter crescentus CB15]
          Length = 317

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 3/303 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-L 584
                  L+P    + F++       IS    + S+  +F  GLN GIDFKGG  + V  
Sbjct: 1   MAWPLIKLLPQKTNLTFVKFARIMAVISATLVVASLIGVFKPGLNLGIDFKGGSVMEVST 60

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A R VDL+ VR+ LE+  +GD+  Q F      LVR Q   G     T +  +       
Sbjct: 61  APRAVDLAKVRTTLEAQGLGDVQVQAFGSPDRALVRFQTPAGGDPGVT-LTNVKTALKQS 119

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           +       N   VGPK+S EL R GI+ ++++   M +YIW RF+  F LGA+  L+ D+
Sbjct: 120 LGDPVQFINPSAVGPKVSGELFRSGILALVLAVGLMFVYIWFRFEPQFGLGAVAGLLHDL 179

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T GF  LF IEF+L  VAA+LT+IGYS+ND VVV+DR+R+N++ Y   +  +D+ID S
Sbjct: 180 ILTFGFIVLFKIEFSLNTVAALLTVIGYSMNDTVVVFDRLRENLRKY-KKMPLKDVIDLS 238

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           INE + R++ T + A +++  +A++GG  +  F++ M FGI V   SSI++ API+L   
Sbjct: 239 INEIVSRTIITGVTAIMALTGLAIFGGDALFGFSVVMIFGIAVGTYSSIYVGAPIILLWG 298

Query: 825 DWR 827
             R
Sbjct: 299 VKR 301


>gi|221235006|ref|YP_002517442.1| protein translocase subunit SecF [Caulobacter crescentus NA1000]
 gi|220964178|gb|ACL95534.1| protein translocase subunit secF [Caulobacter crescentus NA1000]
          Length = 321

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 115/303 (37%), Positives = 170/303 (56%), Gaps = 3/303 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-L 584
                  L+P    + F++       IS    + S+  +F  GLN GIDFKGG  + V  
Sbjct: 5   MAWPLIKLLPQKTNLTFVKFARIMAVISATLVVASLIGVFKPGLNLGIDFKGGSVMEVST 64

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A R VDL+ VR+ LE+  +GD+  Q F      LVR Q   G     T +  +       
Sbjct: 65  APRAVDLAKVRTTLEAQGLGDVQVQAFGSPDRALVRFQTPAGGDPGVT-LTNVKTALKQS 123

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           +       N   VGPK+S EL R GI+ ++++   M +YIW RF+  F LGA+  L+ D+
Sbjct: 124 LGDPVQFINPSAVGPKVSGELFRSGILALVLAVGLMFVYIWFRFEPQFGLGAVAGLLHDL 183

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T GF  LF IEF+L  VAA+LT+IGYS+ND VVV+DR+R+N++ Y   +  +D+ID S
Sbjct: 184 ILTFGFIVLFKIEFSLNTVAALLTVIGYSMNDTVVVFDRLRENLRKY-KKMPLKDVIDLS 242

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           INE + R++ T + A +++  +A++GG  +  F++ M FGI V   SSI++ API+L   
Sbjct: 243 INEIVSRTIITGVTAIMALTGLAIFGGDALFGFSVVMIFGIAVGTYSSIYVGAPIILLWG 302

Query: 825 DWR 827
             R
Sbjct: 303 VKR 305


>gi|45440591|ref|NP_992130.1| preprotein translocase subunit SecD [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808675|ref|YP_652591.1| preprotein translocase subunit SecD [Yersinia pestis Antiqua]
 gi|145600083|ref|YP_001164159.1| preprotein translocase subunit SecD [Yersinia pestis Pestoides F]
 gi|149364965|ref|ZP_01887000.1| protein-export membrane protein SecD [Yersinia pestis CA88-4125]
 gi|153949040|ref|YP_001402081.1| preprotein translocase subunit SecD [Yersinia pseudotuberculosis IP
           31758]
 gi|162421847|ref|YP_001607725.1| preprotein translocase subunit SecD [Yersinia pestis Angola]
 gi|165926553|ref|ZP_02222385.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165935995|ref|ZP_02224565.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011056|ref|ZP_02231954.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213006|ref|ZP_02239041.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398883|ref|ZP_02304407.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421638|ref|ZP_02313391.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|218930219|ref|YP_002348094.1| preprotein translocase subunit SecD [Yersinia pestis CO92]
 gi|229838794|ref|ZP_04458953.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229896052|ref|ZP_04511222.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           Pestoides A]
 gi|229899362|ref|ZP_04514505.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|45435448|gb|AAS61007.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108780588|gb|ABG14646.1| protein-export membrane protein SecD [Yersinia pestis Antiqua]
 gi|115348830|emb|CAL21784.1| protein-export membrane protein SecD [Yersinia pestis CO92]
 gi|145211779|gb|ABP41186.1| protein-export membrane protein SecD [Yersinia pestis Pestoides F]
 gi|149291378|gb|EDM41452.1| protein-export membrane protein SecD [Yersinia pestis CA88-4125]
 gi|152960535|gb|ABS47996.1| protein-export membrane protein SecD [Yersinia pseudotuberculosis
           IP 31758]
 gi|162354662|gb|ABX88610.1| protein-export membrane protein SecD [Yersinia pestis Angola]
 gi|165916140|gb|EDR34747.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921481|gb|EDR38678.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990056|gb|EDR42357.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205793|gb|EDR50273.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960557|gb|EDR56578.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051387|gb|EDR62795.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|229687764|gb|EEO79837.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695160|gb|EEO85207.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229700975|gb|EEO89004.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           Pestoides A]
          Length = 615

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 163/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P++L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 100 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LR+ L+++ I   ++R++ N  + + F D + + +    ++   +            
Sbjct: 151 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 199

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +  +     +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 200 LVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 319

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 320 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKK 378

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 379 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 438

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM+V Y K+G++A  ++  N++L + ++SLL 
Sbjct: 439 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 498

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+NI
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 558

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 559 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 615



 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 440 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 556 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 612



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  +GLL ALPN   +                          +     
Sbjct: 4   RYPLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                   L    D L      + I   S+      I   F D   +    + +   L
Sbjct: 42  GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREALVEAL 95


>gi|120554044|ref|YP_958395.1| preprotein translocase subunit SecD [Marinobacter aquaeolei VT8]
 gi|120323893|gb|ABM18208.1| protein-export membrane protein SecD [Marinobacter aquaeolei VT8]
          Length = 624

 Score =  213 bits (541), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 158/522 (30%), Positives = 274/522 (52%), Gaps = 37/522 (7%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
               P  +       + LGLDLRGG H +LEVD +  +N  L+  S +++  L++E I  
Sbjct: 107 APSTPGWLRSLGAGPMKLGLDLRGGVHFLLEVDMETALNQRLEALSGQIKRELREERIRY 166

Query: 89  FS-MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
                + Q +I LSF D   +    + V             + ++ L        +++ L
Sbjct: 167 RGGDIEDQARIVLSFRDEAARSEAFELVRDQYNEFLLDETTEGEEFL--------LTLTL 218

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           S+  +  +  +A+EQ++  IR R++++G++E  +QR G+ RI+++LPG QD ++ +++LG
Sbjct: 219 SEAEVRNIQEYALEQNLTTIRNRVNELGVAEPLVQRQGADRIIVELPGVQDTAQAKRVLG 278

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
            TA + F                   RD+      +E  V  +G ++  A   FD    +
Sbjct: 279 ATANLEFRMEA-RQDAPSAETEQFPFRDNPQRTARLERDVIATGNNVANAQQAFDENG-Q 336

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV-------------------- 307
           P V+I+ D +G       TR++IG+ +AV+                              
Sbjct: 337 PQVNITMDSVGGDLMNRATRNSIGRRMAVLFIEYRTETETREVNGEIVETENRVVEKGII 396

Query: 308 ---INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                Q+      +I+G  +I  A  LA +LRAG+L   +  V+ER +G  LG  +I  G
Sbjct: 397 SLATVQSALGSSFRITGLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAG 456

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             +++ G  L++L+M+V Y  +GLVA+ ++ LN++L +A +S+L ATLTLP IAGIVL +
Sbjct: 457 MMSVMLGFGLVLLYMLVFYRGFGLVANVALTLNLMLLVACMSILSATLTLPGIAGIVLTV 516

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+ ERI+EE +       +++ G+ RA+ +IFD+NIT L+  V+LF  G G 
Sbjct: 517 GMAVDANVLIFERIKEELKAGVPPQSAINAGYGRAFVSIFDANITTLLVAVILFAMGSGP 576

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           V+GFA+T+ + IL SMF+ + + R ++  +   ++++ + I 
Sbjct: 577 VKGFAVTLCIGILTSMFSGLMVSRGIVNLVYGGRRVEKLSIG 618



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 92/248 (37%), Gaps = 4/248 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +                    ++ +    +    ++ L       G           +  
Sbjct: 368 IEYRTETETREVNGEIVETENRVVEKGIISLATVQSALGSSFRITGLDSIPEAAELALLL 427

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           +   +           +GP + ++ I  G++ V++    +L+Y+ + ++  F L A   L
Sbjct: 428 RAGALAAPMYFVQERTIGPSLGQKNIDAGMMSVMLGFGLVLLYMLVFYR-GFGLVANVAL 486

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L++   +   ++      L  +A ++  +G +V+  V++++R+++ +K     +  +  
Sbjct: 487 TLNLMLLVACMSILSATLTLPGIAGIVLTVGMAVDANVLIFERIKEELKA---GVPPQSA 543

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I+             ++   +  + +   G   +  FA+ +  GI+ +  S + ++  I+
Sbjct: 544 INAGYGRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCIGILTSMFSGLMVSRGIV 603

Query: 821 LFIYDWRA 828
             +Y  R 
Sbjct: 604 NLVYGGRR 611



 Score = 42.4 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 50/526 (9%), Positives = 134/526 (25%), Gaps = 38/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++      IG + ALPNF P     +   A            RG +       
Sbjct: 4   KYPLWKNLVIVFALVIGFIYALPNFFPDDYAIQITGA------------RGST------- 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
             +     L     +L        +    + +    I L+ +D +        V   L  
Sbjct: 45  --EVEQRVLDRALAKLEQE--GIEVKSSLLEERDALIRLTSSDEQL--RARPAVQAALGN 98

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174
                LN+ P     + +       +            +  +  A+ Q +E +  +I + 
Sbjct: 99  EYLVALNMAPSTPGWLRSLGAGPMKLGLDLRGGVHFLLEVDMETALNQRLEALSGQIKRE 158

Query: 175 GISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
              E    R      +  I L    + +R         + +   +      + F+  +  
Sbjct: 159 LREERIRYRGGDIEDQARIVLSFRDEAARSEAFELVRDQYNEFLLDETTEGEEFLLTLTL 218

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                 N      +  ++ I              +                      +  
Sbjct: 219 SEAEVRNIQEYALEQNLTTIRNRVNELGVAEPLVQRQGADRIIVELPGVQDTAQAKRVLG 278

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL----AAMLRAGSLPIKLNIVE 348
             A +           +        + +   T      +      +  A     +    +
Sbjct: 279 ATANLEFRMEARQDAPSAETEQFPFRDNPQRTARLERDVIATGNNVANAQQAFDENGQPQ 338

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                  +G D + + T   +   + ++        +   V    +     +    +  L
Sbjct: 339 VNITMDSVGGDLMNRATRNSIGRRMAVLFIEYRTETETREVNGEIVETENRVVEKGIISL 398

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
               +    +  + G+    ++  L                    +G S     I    +
Sbjct: 399 ATVQSALGSSFRITGLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMM 458

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + ++   ++  +     RGF +   +++ +++   ++ +  +   +
Sbjct: 459 SVMLGFGLVLLYMLVFYRGFGLVANVALTLNLMLLVACMSILSATL 504


>gi|301025427|ref|ZP_07188978.1| protein-export membrane protein SecD [Escherichia coli MS 69-1]
 gi|300396029|gb|EFJ79567.1| protein-export membrane protein SecD [Escherichia coli MS 69-1]
          Length = 604

 Score =  213 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGNNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601


>gi|157369306|ref|YP_001477295.1| preprotein translocase subunit SecD [Serratia proteamaculans 568]
 gi|157321070|gb|ABV40167.1| protein-export membrane protein SecD [Serratia proteamaculans 568]
          Length = 615

 Score =  213 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 168/538 (31%), Positives = 282/538 (52%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L     +          + LGLDLRGG H ++EVD D  ++   + 
Sbjct: 99  FVVALNLAPATPAWLAMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALSKLQEQ 149

Query: 73  YSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+++GI   S+R+   N + + F D   ++              S L    +
Sbjct: 150 TMDTLRSELREKGIPYASIRKLDNNGVEVRFRDDAARDQAI-----------SYLGPRQR 198

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             +        +   L+   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI++
Sbjct: 199 DMVFSANGTNTLKANLTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVV 258

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  N        G            +G   ++  +
Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNTNADTTAAANGRVPGDSEVKDTREGQPVVLYKR 318

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T++ D    +P V+IS D  G       T+DNIGKP+A +      +  
Sbjct: 319 VILTGDHITDSTSSTDEYN-QPQVNISLDSTGGTAMSNFTKDNIGKPMATLFVEYKDSGK 377

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                Q+      +I+G      A  L+ +LRAG+L   + IVE
Sbjct: 378 KDANGRAVLVKQEEVINVANIQSRLGNSFRITGIGNPNEARQLSLLLRAGALIAPIQIVE 437

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A + GLV  ++FM+V Y K+G++A  ++  N++L + ++SLL
Sbjct: 438 ERTIGPTLGQQNITQGLEACLWGLVASIVFMVVWYRKFGMIATTALVANLVLIVGVMSLL 497

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE +  +SV  ++  G+  A+S+I D+N
Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSVQQAIHEGYKGAFSSIVDAN 557

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           IT LI  ++L+  G G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 558 ITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 615



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP + ++ I +G+   +   +A ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 440 TIGPTLGQQNITQGLEACLWGLVASIVFMVVWYR-KFGMIATTALVANLVLIVGVMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +K      S +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSVQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+  +  ++I     I+  +Y  +  N 
Sbjct: 556 ANITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINK 612



 Score = 42.8 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 37/217 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  IGLL ALPN   +                          +     
Sbjct: 4   RYPLWKYLMLIVVIIIGLLYALPNLYGEDPA---------------------VQIT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD----KVTL 117
                   L       R+ L+K+ I   S+      I   F++   +    +    ++  
Sbjct: 42  GVAASETTLDQV----RTVLEKDKIASKSIALENGAILARFSNPDIQLRAREALMAELGD 97

Query: 118 FLQGVNSKLNVDP-------KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
                 +     P        + + +    +     L + ++D  +S   EQ+M+ +R  
Sbjct: 98  KFVVALNLAPATPAWLAMLGAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQTMDTLRSE 157

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           + + GI  ++I++L ++ + ++   +    +    LG
Sbjct: 158 LREKGIPYASIRKLDNNGVEVRFRDDAARDQAISYLG 194


>gi|51595280|ref|YP_069471.1| preprotein translocase subunit SecD [Yersinia pseudotuberculosis IP
           32953]
 gi|108811063|ref|YP_646830.1| preprotein translocase subunit SecD [Yersinia pestis Nepal516]
 gi|167423453|ref|ZP_02315206.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229901291|ref|ZP_04516413.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           Nepal516]
 gi|51588562|emb|CAH20170.1| preprotein translocase, IISP family, part of the channel [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774711|gb|ABG17230.1| protein-export membrane protein SecD [Yersinia pestis Nepal516]
 gi|167057623|gb|EDR67369.1| protein-export membrane protein SecD [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681220|gb|EEO77314.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           Nepal516]
 gi|320016376|gb|ADV99947.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 615

 Score =  213 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 163/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P++L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 100 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LR+ L+++ I   ++R++ N  + + F D + + +    ++   +            
Sbjct: 151 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 199

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +  +     +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 200 LVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 319

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 320 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGATMSNFTKDNIGKPMATLFVEYKDSGKK 378

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 379 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 438

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM+V Y K+G++A  ++  N++L + ++SLL 
Sbjct: 439 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 498

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+NI
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 558

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 559 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 615



 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 440 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 556 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 612



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  +GLL ALPN   +                          +     
Sbjct: 4   RYPLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                   L    D L      + I   S+      I   F D   +    + +   L
Sbjct: 42  GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREALVEAL 95


>gi|295096809|emb|CBK85899.1| protein-export membrane protein SecD [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 604

 Score =  213 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 168/537 (31%), Positives = 293/537 (54%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 89  VVALNLAPATPRWLAALNAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQN 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LRS L+ +GI   ++R+  N  ++++F DS  ++     ++   +            
Sbjct: 140 IDSLRSDLRDKGIPYTTVRKEDNYGLSITFRDSAARDQAVTYLSQRHR-----------D 188

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ +    ++  V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++
Sbjct: 189 LVITSQGSNQLRAVMTDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVE 248

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N  +     G         +  +G   ++  +V
Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRV 308

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302
            ++G H+  +T++   + ++P V+IS D  G       T+DNIGKP+A +          
Sbjct: 309 ILTGDHITDSTSS-QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKK 367

Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                        +      Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 368 DANGRAVLVKEEEVINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEE 427

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG  +I +G  A +AGL + ++FMI  Y K+GL+A  ++  N++L + ++SLL 
Sbjct: 428 RTIGPTLGMQNIKQGLEACLAGLAVSIIFMIFFYKKFGLIATSALIANLVLIIGIMSLLP 487

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE    +SV  +++ G+  A+S+IFD+N+
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIEEGYKGAFSSIFDANV 547

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 548 TTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 94/248 (37%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++ + +    N    ++ L       G S         +  +   
Sbjct: 358 FVEYKDSGKKDANGRAVLVKEEEVINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I++G+   +      +I++   +K  F L A + LI ++
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIKQGLEACLAGLAVSIIFMIFFYK-KFGLIATSALIANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  I++
Sbjct: 477 VLIIGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIEE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I VL +   G   I  FAI    G+  +  ++I     I+  +
Sbjct: 534 GYKGAFSSIFDANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 594 YGGKRVKK 601


>gi|15800135|ref|NP_286147.1| preprotein translocase subunit SecD [Escherichia coli O157:H7
           EDL933]
 gi|15829713|ref|NP_308486.1| preprotein translocase subunit SecD [Escherichia coli O157:H7 str.
           Sakai]
 gi|16128393|ref|NP_414942.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|24111786|ref|NP_706296.1| preprotein translocase subunit SecD [Shigella flexneri 2a str. 301]
 gi|30061903|ref|NP_836074.1| preprotein translocase subunit SecD [Shigella flexneri 2a str.
           2457T]
 gi|74310977|ref|YP_309396.1| preprotein translocase subunit SecD [Shigella sonnei Ss046]
 gi|82542896|ref|YP_406843.1| preprotein translocase subunit SecD [Shigella boydii Sb227]
 gi|82775687|ref|YP_402034.1| preprotein translocase subunit SecD [Shigella dysenteriae Sd197]
 gi|89107278|ref|AP_001058.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K-12 substr. W3110]
 gi|157156778|ref|YP_001461589.1| preprotein translocase subunit SecD [Escherichia coli E24377A]
 gi|157159928|ref|YP_001457246.1| preprotein translocase subunit SecD [Escherichia coli HS]
 gi|162139359|ref|YP_687950.2| preprotein translocase subunit SecD [Shigella flexneri 5 str. 8401]
 gi|170079994|ref|YP_001729314.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170680742|ref|YP_001742543.1| preprotein translocase subunit SecD [Escherichia coli SMS-3-5]
 gi|187731876|ref|YP_001879115.1| preprotein translocase subunit SecD [Shigella boydii CDC 3083-94]
 gi|187776227|ref|ZP_02801299.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4196]
 gi|188024925|ref|ZP_02774886.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4113]
 gi|188492596|ref|ZP_02999866.1| protein-export membrane protein SecD [Escherichia coli 53638]
 gi|189010622|ref|ZP_02808275.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4076]
 gi|189402367|ref|ZP_02781951.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4401]
 gi|189403126|ref|ZP_02793360.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4486]
 gi|189404010|ref|ZP_02786615.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4501]
 gi|189404807|ref|ZP_02811256.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC869]
 gi|189405934|ref|ZP_02825292.2| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC508]
 gi|191166726|ref|ZP_03028553.1| protein-export membrane protein SecD [Escherichia coli B7A]
 gi|193065160|ref|ZP_03046233.1| protein-export membrane protein SecD [Escherichia coli E22]
 gi|193068655|ref|ZP_03049616.1| protein-export membrane protein SecD [Escherichia coli E110019]
 gi|194428801|ref|ZP_03061336.1| protein-export membrane protein SecD [Escherichia coli B171]
 gi|194432639|ref|ZP_03064925.1| protein-export membrane protein SecD [Shigella dysenteriae 1012]
 gi|194438930|ref|ZP_03071015.1| protein-export membrane protein SecD [Escherichia coli 101-1]
 gi|208807745|ref|ZP_03250082.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815009|ref|ZP_03256188.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208823285|ref|ZP_03263603.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400898|ref|YP_002269050.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209917620|ref|YP_002291704.1| preprotein translocase subunit SecD [Escherichia coli SE11]
 gi|217326442|ref|ZP_03442526.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552971|ref|YP_002385884.1| preprotein translocase subunit SecD [Escherichia coli IAI1]
 gi|218688271|ref|YP_002396483.1| preprotein translocase subunit SecD [Escherichia coli ED1a]
 gi|218693869|ref|YP_002401536.1| preprotein translocase subunit SecD [Escherichia coli 55989]
 gi|218698687|ref|YP_002406316.1| preprotein translocase subunit SecD [Escherichia coli IAI39]
 gi|218703690|ref|YP_002411209.1| preprotein translocase subunit SecD [Escherichia coli UMN026]
 gi|238899696|ref|YP_002925492.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           BW2952]
 gi|254160474|ref|YP_003043582.1| preprotein translocase subunit SecD [Escherichia coli B str.
           REL606]
 gi|254791589|ref|YP_003076426.1| preprotein translocase subunit SecD [Escherichia coli O157:H7 str.
           TW14359]
 gi|260842606|ref|YP_003220384.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli
           O103:H2 str. 12009]
 gi|260853628|ref|YP_003227519.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli
           O26:H11 str. 11368]
 gi|260866566|ref|YP_003232968.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli
           O111:H- str. 11128]
 gi|291281312|ref|YP_003498130.1| Protein-export membrane protein secD [Escherichia coli O55:H7 str.
           CB9615]
 gi|293403527|ref|ZP_06647618.1| secD [Escherichia coli FVEC1412]
 gi|298379139|ref|ZP_06989020.1| protein-export membrane protein secD [Escherichia coli FVEC1302]
 gi|331640924|ref|ZP_08342059.1| protein-export membrane protein SecD [Escherichia coli H736]
 gi|331651341|ref|ZP_08352366.1| protein-export membrane protein SecD [Escherichia coli M718]
 gi|331661783|ref|ZP_08362706.1| protein-export membrane protein SecD [Escherichia coli TA143]
 gi|331666757|ref|ZP_08367631.1| protein-export membrane protein SecD [Escherichia coli TA271]
 gi|332281554|ref|ZP_08393967.1| SecYEG protein translocase auxillary subunit [Shigella sp. D9]
 gi|84028687|sp|P0AG91|SECD_ECO57 RecName: Full=Protein-export membrane protein secD
 gi|84028688|sp|P0AG90|SECD_ECOLI RecName: Full=Protein-export membrane protein secD
 gi|84028689|sp|P0AG92|SECD_SHIFL RecName: Full=Protein-export membrane protein secD
 gi|12513258|gb|AAG54755.1|AE005220_4 protein secretion; membrane protein, part of the channel
           [Escherichia coli O157:H7 str. EDL933]
 gi|1773092|gb|AAB40164.1| protein-export membrane protein SecD [Escherichia coli]
 gi|1786609|gb|AAC73511.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|13359916|dbj|BAB33882.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           Sakai]
 gi|24050573|gb|AAN42003.1| membrane protein [Shigella flexneri 2a str. 301]
 gi|30040147|gb|AAP15880.1| membrane protein [Shigella flexneri 2a str. 2457T]
 gi|73854454|gb|AAZ87161.1| SecD [Shigella sonnei Ss046]
 gi|81239835|gb|ABB60545.1| SecD [Shigella dysenteriae Sd197]
 gi|81244307|gb|ABB65015.1| SecD [Shigella boydii Sb227]
 gi|85674548|dbj|BAE76188.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K12 substr. W3110]
 gi|157065608|gb|ABV04863.1| protein-export membrane protein SecD [Escherichia coli HS]
 gi|157078808|gb|ABV18516.1| protein-export membrane protein SecD [Escherichia coli E24377A]
 gi|169887829|gb|ACB01536.1| SecYEG protein translocase auxillary subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|170518460|gb|ACB16638.1| protein-export membrane protein SecD [Escherichia coli SMS-3-5]
 gi|187428868|gb|ACD08142.1| protein-export membrane protein SecD [Shigella boydii CDC 3083-94]
 gi|187768277|gb|EDU32121.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015877|gb|EDU53999.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4113]
 gi|188487795|gb|EDU62898.1| protein-export membrane protein SecD [Escherichia coli 53638]
 gi|188999351|gb|EDU68337.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356010|gb|EDU74429.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362493|gb|EDU80912.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368063|gb|EDU86479.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373491|gb|EDU91907.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC869]
 gi|189377421|gb|EDU95837.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC508]
 gi|190903237|gb|EDV62959.1| protein-export membrane protein SecD [Escherichia coli B7A]
 gi|192927134|gb|EDV81755.1| protein-export membrane protein SecD [Escherichia coli E22]
 gi|192958018|gb|EDV88460.1| protein-export membrane protein SecD [Escherichia coli E110019]
 gi|194413104|gb|EDX29391.1| protein-export membrane protein SecD [Escherichia coli B171]
 gi|194419200|gb|EDX35283.1| protein-export membrane protein SecD [Shigella dysenteriae 1012]
 gi|194422224|gb|EDX38226.1| protein-export membrane protein SecD [Escherichia coli 101-1]
 gi|208727546|gb|EDZ77147.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731657|gb|EDZ80345.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737478|gb|EDZ85162.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162298|gb|ACI39731.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC4115]
 gi|209744146|gb|ACI70380.1| protein-export membrane protein SecD [Escherichia coli]
 gi|209744148|gb|ACI70381.1| protein-export membrane protein SecD [Escherichia coli]
 gi|209744150|gb|ACI70382.1| protein-export membrane protein SecD [Escherichia coli]
 gi|209744152|gb|ACI70383.1| protein-export membrane protein SecD [Escherichia coli]
 gi|209910879|dbj|BAG75953.1| preprotein translocase SecD [Escherichia coli SE11]
 gi|217322663|gb|EEC31087.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350601|emb|CAU96291.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           55989]
 gi|218359739|emb|CAQ97280.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           IAI1]
 gi|218368673|emb|CAR16413.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           IAI39]
 gi|218425835|emb|CAR06641.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           ED1a]
 gi|218430787|emb|CAR11661.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           UMN026]
 gi|238863514|gb|ACR65512.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           BW2952]
 gi|242376186|emb|CAQ30877.1| secD, subunit of SecD-SecF-YajC-YidC Secretion Complex and Sec
           Protein Secretion Complex [Escherichia coli BL21(DE3)]
 gi|253972375|gb|ACT38046.1| protein export protein SecD [Escherichia coli B str. REL606]
 gi|253976585|gb|ACT42255.1| protein export protein SecD [Escherichia coli BL21(DE3)]
 gi|254590989|gb|ACT70350.1| SecYEG protein translocase auxillary subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|257752277|dbj|BAI23779.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli
           O26:H11 str. 11368]
 gi|257757753|dbj|BAI29250.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli
           O103:H2 str. 12009]
 gi|257762922|dbj|BAI34417.1| SecYEG protein translocase auxillary subunit SecD [Escherichia coli
           O111:H- str. 11128]
 gi|281599740|gb|ADA72724.1| Protein-export membrane protein secD [Shigella flexneri 2002017]
 gi|284920215|emb|CBG33274.1| protein-export protein [Escherichia coli 042]
 gi|290761185|gb|ADD55146.1| Protein-export membrane protein secD [Escherichia coli O55:H7 str.
           CB9615]
 gi|291429380|gb|EFF02400.1| secD [Escherichia coli FVEC1412]
 gi|298280252|gb|EFI21756.1| protein-export membrane protein secD [Escherichia coli FVEC1302]
 gi|309700670|emb|CBI99966.1| protein-export protein [Escherichia coli ETEC H10407]
 gi|323938593|gb|EGB34842.1| protein-export membrane protein SecD [Escherichia coli E1520]
 gi|323943214|gb|EGB39370.1| protein-export membrane protein SecD [Escherichia coli E482]
 gi|323945309|gb|EGB41365.1| protein-export membrane protein SecD [Escherichia coli H120]
 gi|323963394|gb|EGB58956.1| protein-export membrane protein SecD [Escherichia coli H489]
 gi|323965360|gb|EGB60818.1| protein-export membrane protein SecD [Escherichia coli M863]
 gi|323976111|gb|EGB71204.1| protein-export membrane protein SecD [Escherichia coli TW10509]
 gi|324116892|gb|EGC10805.1| protein-export membrane protein SecD [Escherichia coli E1167]
 gi|331037722|gb|EGI09942.1| protein-export membrane protein SecD [Escherichia coli H736]
 gi|331051082|gb|EGI23134.1| protein-export membrane protein SecD [Escherichia coli M718]
 gi|331060205|gb|EGI32169.1| protein-export membrane protein SecD [Escherichia coli TA143]
 gi|331065981|gb|EGI37865.1| protein-export membrane protein SecD [Escherichia coli TA271]
 gi|332103906|gb|EGJ07252.1| SecYEG protein translocase auxillary subunit [Shigella sp. D9]
          Length = 615

 Score =  213 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612


>gi|312876083|ref|ZP_07736071.1| protein-export membrane protein SecF [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797069|gb|EFR13410.1| protein-export membrane protein SecF [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 310

 Score =  213 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 147/303 (48%), Gaps = 9/303 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R +   +SIL  +  +   F  G NY IDF GG  L +  ++      +  
Sbjct: 1   MTKIDFMGKRKYFYIVSILVMVIGLISYFVQGFNYDIDFTGGTVLEINLHKVPTAQEISE 60

Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI------TEIVPL 648
              L     G  +      E    + +         +T + +  + K+         +  
Sbjct: 61  LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKKKTELSKETRDKLFGEIAKKYNLKK 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + + + VG  +S EL  + I  V+I++I MLIYI IRF++ F   A+  LI D+   L
Sbjct: 121 EDLISYQNVGAVVSSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             + +F I  N T +AA+LT++GYS+ND +VV+DR+R+N ++    +  +DL++ S+N+T
Sbjct: 181 TVYTIFRIPLNSTFIAAILTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +GRS+ T+M+  I ++ +   G   I  FA P+  G++    SSIFIA  +         
Sbjct: 240 IGRSIATAMSVIIVLVVLYFMGVQSIKEFAFPLLIGVISGTYSSIFIATALWFDWELSTR 299

Query: 829 KNA 831
           K  
Sbjct: 300 KKK 302


>gi|294669309|ref|ZP_06734388.1| protein-export membrane protein SecF [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308719|gb|EFE49962.1| protein-export membrane protein SecF [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 343

 Score =  213 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 167/304 (54%), Gaps = 3/304 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM+       IS+   I ++  L T GLNY ++F GG  + V   +  +
Sbjct: 1   MELFRFKRDIPFMKYGKLTTFISLATFILAVFFLATKGLNYSVEFTGGTVMEVEYAQAAE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR +L SLQ+G+I  Q     K+ ++RL  + G + AQ  +       + +    + 
Sbjct: 61  VDKVRDSLNSLQLGEIQVQALGTNKHLMIRLPNKAGTTSAQ--LSNQTMDILKKQDASAK 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ + +  + ++IY+ +RF+W FA+ AI   + D+   LG 
Sbjct: 119 LRQVEFIGPQVGDELVHNGLIALGMVVVGIIIYLSMRFEWRFAVSAIIANMHDVIIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769
           FALF  EF+LT +A VL ++GYSVN+ VVV+DR+R+N +     + +  ++ID +I  T+
Sbjct: 179 FALFQWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENFRKGAMRNHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R+V T  +    V+ M ++GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTVITHGSTEAMVVSMLLFGGAALHGFSMALTIGIVFGVYSSVLVASPLLLLFGLSREN 298

Query: 830 NARI 833
             R+
Sbjct: 299 IGRV 302


>gi|77359289|ref|YP_338864.1| preprotein translocase subunit SecF [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874200|emb|CAI85421.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 315

 Score =  213 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 97/291 (33%), Positives = 165/291 (56%), Gaps = 2/291 (0%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             ++FM  R   +G S L  + +   +FT GLN+G+DF GG  + V  ++P DL  VR+ 
Sbjct: 9   KTLRFMSLRKVAMGFSTLLILAAFISVFTKGLNFGLDFTGGTAVEVGFSQPADLKKVRNV 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L      D S Q F   +  LVRL  +  D  A+  +   V   +        ++  E V
Sbjct: 69  LAENGFADASVQLFGSSQEILVRLAPRGDDVKAEV-IGNQVIAALKLADESVVMRRIEFV 127

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  +L  +G + ++ + I +LIY+  RF+W FA+GA++ LI D+  T+G F++ G+E
Sbjct: 128 GPSVGEDLKEQGGLAMLTALICILIYVAFRFEWRFAVGAVSGLIHDVIITVGLFSVLGLE 187

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AA+L +IGYS+ND +VV DR+R+N +         ++ID S+ +TL R++ TS+
Sbjct: 188 FDLTILAAILAVIGYSLNDTIVVSDRIRENFRK-VRIDDTIEIIDISLTQTLNRTLVTSI 246

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + ++ + +WGG  I  FA  + FG+ +   SSI++A+ + + +   + 
Sbjct: 247 TTILVLIALFIWGGQTIHGFATALLFGVFIGTYSSIYVASSVAIALGVSKE 297


>gi|311280704|ref|YP_003942935.1| protein-export membrane protein SecD [Enterobacter cloacae SCF1]
 gi|308749899|gb|ADO49651.1| protein-export membrane protein SecD [Enterobacter cloacae SCF1]
          Length = 604

 Score =  213 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 165/524 (31%), Positives = 290/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D   ++   D +T   +             ++ +    ++  
Sbjct: 153 PYTTVRKEDNFGLSITFRDGAARDQAIDYLTARHR-----------DLVISSQGSNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDTRLKEAREYAVQQNINILRNRVNQLGVAEPVVQRQGAERIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G            +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKDTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDAKGRAILVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL+  V+FMI+ Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLLASVIFMILFYKKFGLIATSALIANLVLIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+N+T LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANVTTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +A +I++ + +K  F L A + LI ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLLASVIFMILFYK-KFGLIATSALIANLVLIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +  N 
Sbjct: 545 ANVTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|294635295|ref|ZP_06713794.1| protein-export membrane protein SecF [Edwardsiella tarda ATCC
           23685]
 gi|291091329|gb|EFE23890.1| protein-export membrane protein SecF [Edwardsiella tarda ATCC
           23685]
          Length = 322

 Score =  213 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 89/297 (29%), Positives = 165/297 (55%), Gaps = 2/297 (0%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L      I FMR  +    IS L  + S  +++  G N+G+DF GG  + +   +  DL
Sbjct: 9   QLNHGRKVIDFMRWDYVAFTISGLLLLASCLVMYVKGFNWGLDFTGGTVIELTVEKAPDL 68

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + +R+ L      +   QNF   ++ ++R+    G+   Q     +V      I   +++
Sbjct: 69  NAMRAALVKSGFEEPVVQNFGSSRDIMIRMAPISGN-EGQELGNRVVAVVKQVIDGDASV 127

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  E VGP +  +L + G + ++++ I++LIY+  RF+W  ALGA+  L  D+  TLG  
Sbjct: 128 KRIEFVGPSVGSDLAQAGGMALLVALISILIYVGFRFEWRLALGAVLALAHDVVITLGVL 187

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +TL R
Sbjct: 188 SLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIVNVSLTQTLSR 246

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R 
Sbjct: 247 TIMTSATTLVVVLCLYIFGGAMLKGFSLTMLIGVSIGTISSIYVASALALKLGMKRE 303


>gi|149908737|ref|ZP_01897398.1| protein export protein SecD [Moritella sp. PE36]
 gi|149808279|gb|EDM68218.1| protein export protein SecD [Moritella sp. PE36]
          Length = 614

 Score =  213 bits (540), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 160/519 (30%), Positives = 280/519 (53%), Gaps = 31/519 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H +LEVD  + +         + R+ L++E +
Sbjct: 104 NLAPATPDWLQSLGAGPLKLGLDLRGGVHFLLEVDMQEALVKAQDQMLQDFRTDLREEKL 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R+  N +T  F D+  ++     +    Q +   L  D + N         ++  
Sbjct: 164 RYTAIRKNSNGVTARFRDAETRDAAIKLIETKYQDL---LLTDSENNGQF-----SLTAK 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S++ + ++  +A++Q++ IIR R++Q+G++E  +QR G+ RI+++LPG QD +  +++L
Sbjct: 216 MSEDKLAEIKEYALQQNITIIRNRVNQLGVAEPLVQRQGADRIVVELPGVQDTAGAKEIL 275

Query: 207 GTTAKMSFHKVLP--NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           G TA + F  V    +        G +     DG   +++ +V ++G H+ GAT++ D  
Sbjct: 276 GATATLEFRLVDNKADPYSSRVPAGSQKYTTRDGRPVVLKKQVILTGNHITGATSSLDEF 335

Query: 265 THKPVVDISFDEMGARR-----------------FFEVTRDNIGKPLAVVLDGRVLTAPV 307
           +   V      + G++                   ++ T +      + +     +    
Sbjct: 336 SRAQVNIDLDSQGGSKMSRATKKAIGTSMATVFIEYKPTGEKTADGKSKLQKIEEVINVA 395

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             QA      +I+G  +   A  LA +LRAG+L   + IVEER +G  LG  +I  G  A
Sbjct: 396 TIQAQLGRSFRITGLDSSSEAKNLALLLRAGALVAPVQIVEERTIGPSLGKQNIENGLSA 455

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGL 426
           ++ G++ IV+FM + Y K+GLVA+ ++  N+I+ + ++S++  AT+TLP IAGIVL IG+
Sbjct: 456 MIYGMIAIVIFMAIYYRKFGLVANVALSANIIMIIGIMSMIPGATMTLPGIAGIVLTIGM 515

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+N+L+ ERIREE R  +S+  ++  G+  A STI D+NIT L+  ++LF  G GA++
Sbjct: 516 AVDANVLIFERIREELRDGRSIQQAIHCGYDNALSTIADANITTLLTAIILFAVGTGAIK 575

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GFAIT+ + I  SMFT+I   RA++ F+   KK+  + I
Sbjct: 576 GFAITLAIGIAASMFTSIIGTRAIVNFLWGNKKIDKLSI 614



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 93/215 (43%), Gaps = 5/215 (2%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +  L R     G   +       +  +   +V    I     +GP + ++ I  G+  +I
Sbjct: 398 QAQLGRSFRITGLDSSSEAKNLALLLRAGALVAPVQIVEERTIGPSLGKQNIENGLSAMI 457

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYS 733
              IA++I++ I ++  F L A   L  +I   +G  ++  G    L  +A ++  IG +
Sbjct: 458 YGMIAIVIFMAIYYR-KFGLVANVALSANIIMIIGIMSMIPGATMTLPGIAGIVLTIGMA 516

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  V++++R+R+ ++      S +  I    +  L      ++   ++ + +   G   
Sbjct: 517 VDANVLIFERIREELRD---GRSIQQAIHCGYDNALSTIADANITTLLTAIILFAVGTGA 573

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           I  FAI +A GI  +  +SI     I+ F++  + 
Sbjct: 574 IKGFAITLAIGIAASMFTSIIGTRAIVNFLWGNKK 608



 Score = 42.8 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 36/120 (30%), Gaps = 26/120 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++      I LL A PN   +                          + +   
Sbjct: 4   KYPLWKYLMVIATIAICLLYATPNLYGEDPA-----------------------VQVSAA 40

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +        D++++ L K+ I   S+    N++ +   DS  +   ++ +   L  
Sbjct: 41  RGAVIE---VSTLDKVKAQLDKQEISYKSVSLENNQVLVRLTDSEQQLLASEILKEQLGQ 97


>gi|254786636|ref|YP_003074065.1| protein-export membrane protein SecD [Teredinibacter turnerae
           T7901]
 gi|237686735|gb|ACR13999.1| protein-export membrane protein SecD [Teredinibacter turnerae
           T7901]
          Length = 621

 Score =  213 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 149/526 (28%), Positives = 264/526 (50%), Gaps = 38/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + +     + LGLDL GG H +LEVD    +    +   ++L   ++ E I
Sbjct: 104 NLAPTTPDWLLEMGAGPMKLGLDLAGGVHFLLEVDTPKVLAAEYKSIQEQLEKQIRSERI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +    N++T+                + L         + +      + +  +   
Sbjct: 164 YGARVTLRDNQLTVVADSDAD--------RMKLTEFMRSDVPELQYERAEESGKFIVRAR 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS   + +   +A+ Q++  +R R+++IG++E  +QR G +RI+++LPG QD +R + ++
Sbjct: 216 LSDAYVREKEDYAVTQNLTTLRNRVNEIGVAEPLVQRQGRNRIVVELPGIQDTARAKSII 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY---LVEDKVEISGIHLNGATANFDP 263
           G TA + F      ++         +  ++   ++    VE +  I+G  +  A   FD 
Sbjct: 276 GKTANLEFRLEANESTLSSQKESYPWRDEASQRRFGDNTVEKRAVITGERVTNAQVGFDQ 335

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP----------------- 306
            T +P V+I+ D  G       TR N+G+ +AV+       +                  
Sbjct: 336 DTSQPQVNITLDGQGGAAINRATRHNVGRRMAVLFIEYKTKSTKYKDENGEEQTRYEQVP 395

Query: 307 -------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+      +I+G    + A  LA +LRAG+L   +  VEER +G  LG++
Sbjct: 396 EAGIISFPTVQSALGRNFRITGLDNPQEASELALLLRAGALAAPMGFVEERTIGPSLGAE 455

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I  G  ++  GL L+++FM+  Y  +GL A+ ++  N++L +A++S+ GATLTLP IAG
Sbjct: 456 NIGLGIKSVQIGLGLVLVFMLFYYRVFGLAANIALGTNLVLLVAVMSIFGATLTLPGIAG 515

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE R       ++  GF RA+ TI D+N+T  I  ++L+ 
Sbjct: 516 IVLTVGMAVDANVLIFSRIREELRDGMPAQSAIKAGFERAFETILDANLTTFIVAIILYA 575

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G+V+GFA+T+ + I+ SMFTA+ + RA++  I   +K+  + I
Sbjct: 576 IGSGSVKGFAVTLAIGIVTSMFTAVMVTRAIINLIYGGRKINKLWI 621



 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 93/241 (38%), Gaps = 4/241 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                      Q+ +    +F   ++ L R     G    Q      +  +   +     
Sbjct: 382 DENGEEQTRYEQVPEAGIISFPTVQSALGRNFRITGLDNPQEASELALLLRAGALAAPMG 441

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                 +GP +  E I  GI  V I    +L+++   ++  F L A   L  ++   +  
Sbjct: 442 FVEERTIGPSLGAENIGLGIKSVQIGLGLVLVFMLFYYRV-FGLAANIALGTNLVLLVAV 500

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            ++FG    L  +A ++  +G +V+  V+++ R+R+ ++     +  +  I         
Sbjct: 501 MSIFGATLTLPGIAGIVLTVGMAVDANVLIFSRIREELRD---GMPAQSAIKAGFERAFE 557

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  ++  FI  + +   G   +  FA+ +A GIV +  +++ +   I+  IY  R  N
Sbjct: 558 TILDANLTTFIVAIILYAIGSGSVKGFAVTLAIGIVTSMFTAVMVTRAIINLIYGGRKIN 617

Query: 831 A 831
            
Sbjct: 618 K 618



 Score = 44.7 bits (103), Expect = 0.067,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 34/118 (28%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L  +I  +G + ALPN        +                  GS   L++D
Sbjct: 3   RYPLWKYLLILVILGVGFIYALPNIYAPDPAVQI----------------SGSSASLKID 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    Q   D+  + L K  I  F +        +       +     ++   L
Sbjct: 47  ---------QKAMDKAVAVLDKGNIAYFGVEHDDLNGLIRLRQQSDQLKAQREIQEAL 95


>gi|326319352|ref|YP_004237024.1| protein-export membrane protein SecF [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323376188|gb|ADX48457.1| protein-export membrane protein SecF [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 317

 Score =  213 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS +    ++  LFT GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIKKDIPFMKHALVFNAISFITFALAVFFLFTRGLHLSVEFTGGTVMEVAYTQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              VR  +  L   D+  QNF   ++ ++RL  Q G + AQ    E V   + E  P  T
Sbjct: 61  TGKVREAVSRLGYSDVIVQNFGTSRDVMIRLPVQKGATSAQQS--EQVMGALKEQDPGVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL+  G++ + +  + +++Y+  RF+W F + AI   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGEELVHGGLMALAMVVVGIVVYLAFRFEWKFGVAAIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +A VL ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAGVLAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +    VL M  +GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|254194798|ref|ZP_04901228.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           S13]
 gi|169651547|gb|EDS84240.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           S13]
          Length = 673

 Score =  213 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 164/514 (31%), Positives = 268/514 (52%), Gaps = 26/514 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGYQ 219

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           ++ T          +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 220 VVGT---------FTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 270

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 271 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 330

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 331 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 389

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 390 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 449

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 450 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 509

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 510 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 569

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 570 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 603



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 403 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 462

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 463 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 521

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 522 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 578

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 579 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 607



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +  S   K  + LG D        L   
Sbjct: 3   RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +  +            + +  + +   +       I +   D+  +  + D +   L  
Sbjct: 53  VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLNA 101


>gi|238897328|ref|YP_002923005.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465083|gb|ACQ66857.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 322

 Score =  213 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 163/302 (53%), Gaps = 2/302 (0%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +   L        FMR      GIS +    ++ ++   G N+G+DF GG  + +   
Sbjct: 4   NYTVEQLNYGRKVYNFMRWDNVAFGISFVLMAAAVLIISIRGFNWGLDFTGGTVIEITME 63

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +P  L  +R  L+   +     QNF   ++ ++R+  +  ++  Q    +++        
Sbjct: 64  QPAPLDQIRDALKIAGLVGPVVQNFGTTRDLMIRMSAKH-NNAIQELGQKIITIIDQSTN 122

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
             + ++  E VGP +  EL + G + ++++ +++LIY+ +RF+W  ALG +  L  D+  
Sbjct: 123 QKTILKRVEFVGPSVGSELAQTGSMALLVALLSILIYVGLRFEWRLALGTVLALGHDVII 182

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           TLG  +LF IE +LT +A+++++IGYS+ND +VV DR+R+N +      S+ ++I+ S+ 
Sbjct: 183 TLGILSLFKIEIDLTILASLMSVIGYSLNDSIVVSDRIRENFRQIRRGTSY-EIINVSLT 241

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +TL R++ TS    I V  + ++GG+++  F++ M  GI +   SSI++A+ + L +   
Sbjct: 242 QTLSRTIMTSATTLIVVFMLYLFGGAMLHGFSLTMLIGISIGTLSSIYVASALALKLGMK 301

Query: 827 RA 828
           R 
Sbjct: 302 RE 303


>gi|170025479|ref|YP_001721984.1| preprotein translocase subunit SecD [Yersinia pseudotuberculosis
           YPIII]
 gi|294504917|ref|YP_003568979.1| protein-export membrane protein SecD [Yersinia pestis Z176003]
 gi|169752013|gb|ACA69531.1| protein-export membrane protein SecD [Yersinia pseudotuberculosis
           YPIII]
 gi|262362982|gb|ACY59703.1| protein-export membrane protein SecD [Yersinia pestis D106004]
 gi|262366903|gb|ACY63460.1| protein-export membrane protein SecD [Yersinia pestis D182038]
 gi|294355376|gb|ADE65717.1| protein-export membrane protein SecD [Yersinia pestis Z176003]
          Length = 604

 Score =  213 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 163/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P++L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 89  VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LR+ L+++ I   ++R++ N  + + F D + + +    ++   +            
Sbjct: 140 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 188

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +  +     +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 189 LVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 248

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 308

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 309 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKK 367

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 368 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 427

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM+V Y K+G++A  ++  N++L + ++SLL 
Sbjct: 428 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 487

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+NI
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 547

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 429 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 545 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|152979888|ref|YP_001352044.1| preprotein translocase subunit SecF [Janthinobacterium sp.
           Marseille]
 gi|151279965|gb|ABR88375.1| preprotein translocase SecF subunit [Janthinobacterium sp.
           Marseille]
          Length = 314

 Score =  213 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 156/299 (52%), Gaps = 3/299 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS L  + ++  L   GL+  I+F GG  + V  ++P D
Sbjct: 1   MEFFRIKKDIPFMRHALIFNVISALTFVAAVFFLLHRGLHLSIEFTGGTVMEVTYSQPAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR  L  L   D+  Q+F   ++ L+RL  Q     AQ  + E V   +        
Sbjct: 61  IEGVRGKLTDLGYVDMQVQSFGTAQDVLIRLPVQKNADSAQ--ISERVIGALKAQDSTVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++  EL   G++ + +  I ++IY+  RF+W +A+ AI   + D+   LGF
Sbjct: 119 LKRVEFVGPQVGDELTHDGLMALGMLVIGIVIYLAFRFEWKYAVSAILANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETL 769
           FA F  EF+LT +AAVL ++GYSVN+ VVV+DR+R+  +      +   ++++ +I +T+
Sbjct: 179 FAFFQWEFSLTVLAAVLAVLGYSVNESVVVFDRVRETFRDRRFGKMPTEEVLNHAITQTI 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R+V T  +  + VL M  +GG  +  FA+ +  GI     SS+F+AA + +++   R 
Sbjct: 239 SRTVITHGSTQLMVLSMLFFGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKRE 297


>gi|145589972|ref|YP_001156569.1| preprotein translocase subunit SecF [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048378|gb|ABP35005.1| protein translocase subunit secF [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 324

 Score =  213 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 159/305 (52%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS +  + ++  L+ +GL+  I+F GG  + V   +   
Sbjct: 1   MEFFRIKKDIPFMRHALVLNAISFITFLAAVFFLWHNGLHLSIEFTGGTVMEVSYPQTAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  +R+ +E L   D   QNF   ++ ++RL  Q        +       V + +     
Sbjct: 61  LESIRAKVEKLGYADTQIQNFGSSRDVMIRLPLQKDAEGKLISSADQSNAVMQVLDPTTS 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G+  +I   I +++Y+  RF+W FAL  I   + D+   
Sbjct: 121 GVKLQRVEFVGPQVGQELAIDGLKALIFVVIGIVLYLSFRFEWKFALAGIIANLHDVVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+N + Y   ++ R++ID +I  
Sbjct: 181 LGFFAFFHWEFSLSVLAAVLAVLGYSVNESVVIFDRIRENFRKYRK-MNTREIIDNAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R+V T  +  + VL M ++GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTVITHGSTEMMVLAMLIFGGPTLFYFALALTIGILFGIYSSVFVAAALAMWLGVTR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|328675963|gb|AEB28638.1| Protein-export membrane protein SecF [Francisella cf. novicida
           3523]
          Length = 314

 Score =  213 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 158/300 (52%), Gaps = 3/300 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I F+  + +    S++  + S+  +FT GLN G+DF GG Q+ +  +    
Sbjct: 1   MEFFKQKTDIDFLGIKKYTTVFSVIMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648
            S   +   +    + +     G+ N  +        +     + +  +    ++     
Sbjct: 61  DSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVESSLN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           + +Q+   +GP++ +EL   G++ +II+ + +LIYI  RF+  F + A   L+ D    L
Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIIAMVCILIYISARFEMKFGISACIALLHDPIVIL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N +    + S  +++++SIN+T
Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKM-RNASVVEVVNRSINDT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS    + VL + ++GGS + +F++ +  GIVV   SSI++A  + + +   R 
Sbjct: 240 LSRTILTSGLTMLVVLVLYLFGGSSVHNFSLALILGIVVGTYSSIYVAGVVAVALGLNRE 299


>gi|312884252|ref|ZP_07743961.1| preprotein translocase subunit SecD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368025|gb|EFP95568.1| preprotein translocase subunit SecD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 607

 Score =  213 bits (540), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 158/537 (29%), Positives = 281/537 (52%), Gaps = 43/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L  A PN+L                + LGLDLRGG H ++EVD D  +   +   
Sbjct: 89  IVALNLAPATPNWLDSIGAA---------PLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQ 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            +  RS L++E I   S+R+   + + +   + +   +    ++   + +    +    +
Sbjct: 140 EEAFRSELREEKIRYRSIRESGSDSVEVILRNEKQLADAMSLLSANHRDMTFSQSDAGGR 199

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            L        +    ++  + +V ++A+EQ++ I+R R++++G++E  +QR G+ RI+++
Sbjct: 200 FL--------LRATFTEQRLAEVRNYAVEQNITILRNRVNELGVAEPLVQRQGAARIVVE 251

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F +V                G     D +G   +++ +V
Sbjct: 252 LPGVQDTARAKEILGATATLEFREVDSRADLSAAMNGRAPAGSEIKFDRNGRPVVLKKRV 311

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302
            + G  +    ++   +  +P V+I  D  G  +    ++ NIGK +A V          
Sbjct: 312 ILGGQSITD-ASSSADEYGRPQVNIDLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKR 370

Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                        +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEE
Sbjct: 371 TPEGKVVLSKHEEVINQATIQSALGRSFRITGIDSAAEAHNLALLLRAGALIAPISIVEE 430

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  +G  +I  G  A + G+V ++LF ++ Y K+G +A+ ++  N+IL + ++S++ 
Sbjct: 431 RTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYRKFGFIANMALLANLILIVGVMSMIP 490

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R  ++   ++  G++ A+STI D+NI
Sbjct: 491 GATMTLPGIAGIVLTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADANI 550

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++LF  G GA++GFA+T+ + IL SMFTAI   R ++  I   K++  + I
Sbjct: 551 TTLITAIILFAIGTGAIKGFAVTLSIGILTSMFTAIIGTRCVVNLIYGGKRIDKLSI 607



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 89/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 396 RSFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F   A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMLFTLLYYR-KFGFIANMALLANLILIVGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      + +  I +            ++   I+ + +   G   I  FA
Sbjct: 515 LIFERIREELRD---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAIGTGAIKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     ++  IY  + 
Sbjct: 572 VTLSIGILTSMFTAIIGTRCVVNLIYGGKR 601


>gi|30249131|ref|NP_841201.1| preprotein translocase subunit SecF [Nitrosomonas europaea ATCC
           19718]
 gi|30180450|emb|CAD85055.1| secF; protein-export membrane protein [Nitrosomonas europaea ATCC
           19718]
          Length = 310

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 159/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I F R   + +  S++ SI +I  L T GLN  +DF GG  + +   +P +
Sbjct: 1   MDFFRFERDIPFTRWGKFSMTFSLIISILAIYSLTTKGLNLAVDFTGGTVMEISYQQPAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L   R  L  + + D   QNF   ++ ++RL  +     A   + E V   +    P   
Sbjct: 61  LDKTRKILAGIGMSDAIVQNFGTSRDVMIRLPVKL--EHAGGNLSETVMTALKVDDPSVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++  EL+  G++ ++  ++ ++ Y+ +RF+W F +  I   + D+   LG 
Sbjct: 119 MKRVEFVGPQVGDELLENGLLAMLFVSMGIVAYLAVRFEWKFGVACIVANLHDVLTILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+ F  EF+LT +AAVL ++GYSVN+ VV+ DR+R+N +      +   +ID +I ET+ 
Sbjct: 179 FSFFQWEFDLTVLAAVLAILGYSVNESVVISDRIRENFRKLRK-ATVTRIIDNAITETMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + V+ M ++GG  + +FA+ +  GI+    SSI IA+PILL +   R   
Sbjct: 238 RTIITHGSTQMVVISMFLFGGEALHNFALALTIGILFGIYSSIMIASPILLLLGAKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|209520463|ref|ZP_03269223.1| protein-export membrane protein SecD [Burkholderia sp. H160]
 gi|209499108|gb|EDZ99203.1| protein-export membrane protein SecD [Burkholderia sp. H160]
          Length = 693

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 162/516 (31%), Positives = 269/516 (52%), Gaps = 22/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L  A P ++          A+    + LGLDLRGG H +L+VD    +N  L   
Sbjct: 109 IVALNLQSASPTWMT---------ALRALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+   +    + ++   + ++ AD    +     +   +  +         + 
Sbjct: 160 ASDVRTLLRDNNVRDGGVNRVNQSVVVNLADQATADAALKLLGRSVSELQW-----TSQP 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G++E  IQ+ G+ RI+++L
Sbjct: 215 NTGADGGVQLVGTFTPAVQRAVQDAALKQNITTLHNRVNELGVAEPVIQQQGADRIVVEL 274

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L+  +V  
Sbjct: 275 PGVQDTAKAKDIIGRTATLEARLADPVNTHPNPNDPVPPGDELFTQGNQAPVLLRKQVIF 334

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  R    +   
Sbjct: 335 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRDNIGKPMAMVLFERGKGEVLTV 393

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   + I+EER +G  LG+D+I KG  
Sbjct: 394 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMEIIEERTIGPSLGADNINKGFH 453

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           ++V G   I +FMI  Y  +G+++   + +N++L +A+LS+L ATLTLP IA I L +G+
Sbjct: 454 SVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLVAVLSMLQATLTLPGIAAIALALGM 513

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+D+N+L+NER+REE R       ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 514 AIDANVLINERVREELRHGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 573

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           GFAI   + IL SMF+A+   R ++ F    KK   
Sbjct: 574 GFAIVHCIGILTSMFSAVFFSRGLVNFWYGGKKKLK 609



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 85/209 (40%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I KG   V+    A+ +++
Sbjct: 407 TGQPTPQAAADLALLLRAGSLAAPMEIIEERTIGPSLGADNINKGFHSVVWGFAAIAVFM 466

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   ++      L  +AA+   +G +++  V++ +R+
Sbjct: 467 IAYY-MLFGVISMIGLSVNLLLLVAVLSMLQATLTLPGIAAIALALGMAIDANVLINERV 525

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   +  FAI    G
Sbjct: 526 REELR---HGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAIVHCIG 582

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++ F Y  + K   +
Sbjct: 583 ILTSMFSAVFFSRGLVNFWYGGKKKLKSL 611



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/152 (10%), Positives = 40/152 (26%), Gaps = 25/152 (16%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   IGL+  LPN   ++                           ++V 
Sbjct: 3   RYPLWKYAVMLVALVIGLVYTLPNLYGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                          + + L    I   ++    ++   +        +   +V   LQ 
Sbjct: 38  SGKATVRLDATTLAAVEAALAGNQIKPTAVTFDNSQTNANIRVRLTDTDTQLRVKDLLQK 97

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
             +    DP+  + +       + + +   + 
Sbjct: 98  SLNSDPNDPQYIVALNLQSASPTWMTALRALP 129


>gi|170726111|ref|YP_001760137.1| preprotein translocase subunit SecD [Shewanella woodyi ATCC 51908]
 gi|169811458|gb|ACA86042.1| protein-export membrane protein SecD [Shewanella woodyi ATCC 51908]
          Length = 616

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 160/522 (30%), Positives = 269/522 (51%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++  + P  +     + + LGLDLRGG H ++EVD  + +    +    + R+ L+ E I
Sbjct: 104 NLAPKTPQWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMTEAKMSDFRTDLRGEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D          +             D     + +     +   
Sbjct: 164 RYAGIRNSAKGIEIKFRDEENLGRAERFLKTRGN--------DMVFRDISSGGNYLLLAN 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  + QV   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R + +L
Sbjct: 216 LSEAYVKQVKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKDIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V           G      +     +G Q ++   V ++G H+ GA  +F
Sbjct: 276 GATASIEFHMVDEKADAAAAASGRISPSSQVYNRRNGGQVVLHKAVMLTGDHIQGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           D  + +P V I+ D  G   F  VT+DNIGKP+A +                  +     
Sbjct: 336 DEYS-RPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGEKNPDGSIKMQKIEEV 394

Query: 322 NFTI-----------------ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                  A  LA +LRAG+L   + IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLEHAEAQSLALLLRAGALIAPVTIVEERTIGPSLGAENIQNG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+ ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 MQAMIWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFT+I   R+++  I   K++K + I
Sbjct: 575 AVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKKLSI 616



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 91/234 (38%), Gaps = 6/234 (2%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            S+++  I            +   +              +  +   ++   TI     +G
Sbjct: 384 GSIKMQKIEEVISVATIQARLGRNFVITGLEHAEAQSLALLLRAGALIAPVTIVEERTIG 443

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIE 717
           P +  E I+ G+  +I     +LI++ + ++  F L A   L  ++   +G  ++  G  
Sbjct: 444 PSLGAENIQNGMQAMIWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGVMSMIPGAV 502

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +            ++
Sbjct: 503 LTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHEGYGNAFSTIADANI 559

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
             F++ L +   G   +  FA+ +  GI  +  +SI     I+       R K 
Sbjct: 560 TTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKK 613


>gi|170021220|ref|YP_001726174.1| preprotein translocase subunit SecD [Escherichia coli ATCC 8739]
 gi|195938529|ref|ZP_03083911.1| preprotein translocase subunit SecD [Escherichia coli O157:H7 str.
           EC4024]
 gi|253774607|ref|YP_003037438.1| preprotein translocase subunit SecD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|256020375|ref|ZP_05434240.1| preprotein translocase subunit SecD [Shigella sp. D9]
 gi|256023975|ref|ZP_05437840.1| preprotein translocase subunit SecD [Escherichia sp. 4_1_40B]
 gi|261223885|ref|ZP_05938166.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256401|ref|ZP_05948934.1| protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           FRIK966]
 gi|293408554|ref|ZP_06652393.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293413662|ref|ZP_06656311.1| preprotein translocase SecD subunit [Escherichia coli B185]
 gi|293418475|ref|ZP_06660910.1| preprotein translocase SecD subunit [Escherichia coli B088]
 gi|297517229|ref|ZP_06935615.1| preprotein translocase subunit SecD [Escherichia coli OP50]
 gi|300818269|ref|ZP_07098480.1| protein-export membrane protein SecD [Escherichia coli MS 107-1]
 gi|300820354|ref|ZP_07100506.1| protein-export membrane protein SecD [Escherichia coli MS 119-7]
 gi|300900474|ref|ZP_07118641.1| protein-export membrane protein SecD [Escherichia coli MS 198-1]
 gi|300903328|ref|ZP_07121256.1| protein-export membrane protein SecD [Escherichia coli MS 84-1]
 gi|300918213|ref|ZP_07134819.1| protein-export membrane protein SecD [Escherichia coli MS 115-1]
 gi|300924127|ref|ZP_07140119.1| protein-export membrane protein SecD [Escherichia coli MS 182-1]
 gi|300930298|ref|ZP_07145711.1| protein-export membrane protein SecD [Escherichia coli MS 187-1]
 gi|300936395|ref|ZP_07151323.1| protein-export membrane protein SecD [Escherichia coli MS 21-1]
 gi|300947942|ref|ZP_07162089.1| protein-export membrane protein SecD [Escherichia coli MS 116-1]
 gi|300957971|ref|ZP_07170137.1| protein-export membrane protein SecD [Escherichia coli MS 175-1]
 gi|301025760|ref|ZP_07189274.1| protein-export membrane protein SecD [Escherichia coli MS 196-1]
 gi|301301555|ref|ZP_07207690.1| protein-export membrane protein SecD [Escherichia coli MS 124-1]
 gi|301330732|ref|ZP_07223334.1| protein-export membrane protein SecD [Escherichia coli MS 78-1]
 gi|301647328|ref|ZP_07247141.1| protein-export membrane protein SecD [Escherichia coli MS 146-1]
 gi|307137050|ref|ZP_07496406.1| preprotein translocase subunit SecD [Escherichia coli H736]
 gi|307312217|ref|ZP_07591853.1| protein-export membrane protein SecD [Escherichia coli W]
 gi|309786995|ref|ZP_07681607.1| protein-export membrane protein SecD [Shigella dysenteriae 1617]
 gi|309794868|ref|ZP_07689289.1| protein-export membrane protein SecD [Escherichia coli MS 145-7]
 gi|110613978|gb|ABF02645.1| SecD [Shigella flexneri 5 str. 8401]
 gi|169756148|gb|ACA78847.1| protein-export membrane protein SecD [Escherichia coli ATCC 8739]
 gi|253325651|gb|ACT30253.1| protein-export membrane protein SecD [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|260450405|gb|ACX40827.1| protein-export membrane protein SecD [Escherichia coli DH1]
 gi|291325003|gb|EFE64418.1| preprotein translocase SecD subunit [Escherichia coli B088]
 gi|291433720|gb|EFF06693.1| preprotein translocase SecD subunit [Escherichia coli B185]
 gi|291471732|gb|EFF14215.1| conserved hypothetical protein [Escherichia coli B354]
 gi|299879987|gb|EFI88198.1| protein-export membrane protein SecD [Escherichia coli MS 196-1]
 gi|300315345|gb|EFJ65129.1| protein-export membrane protein SecD [Escherichia coli MS 175-1]
 gi|300355955|gb|EFJ71825.1| protein-export membrane protein SecD [Escherichia coli MS 198-1]
 gi|300404623|gb|EFJ88161.1| protein-export membrane protein SecD [Escherichia coli MS 84-1]
 gi|300414598|gb|EFJ97908.1| protein-export membrane protein SecD [Escherichia coli MS 115-1]
 gi|300419580|gb|EFK02891.1| protein-export membrane protein SecD [Escherichia coli MS 182-1]
 gi|300452494|gb|EFK16114.1| protein-export membrane protein SecD [Escherichia coli MS 116-1]
 gi|300458501|gb|EFK21994.1| protein-export membrane protein SecD [Escherichia coli MS 21-1]
 gi|300461870|gb|EFK25363.1| protein-export membrane protein SecD [Escherichia coli MS 187-1]
 gi|300527139|gb|EFK48208.1| protein-export membrane protein SecD [Escherichia coli MS 119-7]
 gi|300529160|gb|EFK50222.1| protein-export membrane protein SecD [Escherichia coli MS 107-1]
 gi|300843052|gb|EFK70812.1| protein-export membrane protein SecD [Escherichia coli MS 124-1]
 gi|300843393|gb|EFK71153.1| protein-export membrane protein SecD [Escherichia coli MS 78-1]
 gi|301074524|gb|EFK89330.1| protein-export membrane protein SecD [Escherichia coli MS 146-1]
 gi|306907719|gb|EFN38221.1| protein-export membrane protein SecD [Escherichia coli W]
 gi|308121521|gb|EFO58783.1| protein-export membrane protein SecD [Escherichia coli MS 145-7]
 gi|308924573|gb|EFP70068.1| protein-export membrane protein SecD [Shigella dysenteriae 1617]
 gi|313646975|gb|EFS11432.1| protein-export membrane protein SecD [Shigella flexneri 2a str.
           2457T]
 gi|315059685|gb|ADT74012.1| SecYEG protein translocase auxillary subunit [Escherichia coli W]
 gi|315135090|dbj|BAJ42249.1| conserved hypothetical protein [Escherichia coli DH1]
 gi|315256232|gb|EFU36200.1| protein-export membrane protein SecD [Escherichia coli MS 85-1]
 gi|315616652|gb|EFU97269.1| protein-export membrane protein SecD [Escherichia coli 3431]
 gi|320181610|gb|EFW56525.1| Protein-export membrane protein SecD [Shigella boydii ATCC 9905]
 gi|320186037|gb|EFW60782.1| Protein-export membrane protein SecD [Shigella flexneri CDC 796-83]
 gi|320192821|gb|EFW67461.1| Protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           EC1212]
 gi|320201649|gb|EFW76225.1| Protein-export membrane protein SecD [Escherichia coli EC4100B]
 gi|320638397|gb|EFX08111.1| preprotein translocase subunit SecD [Escherichia coli O157:H7 str.
           G5101]
 gi|320656021|gb|EFX23937.1| preprotein translocase subunit SecD [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661171|gb|EFX28602.1| preprotein translocase subunit SecD [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665147|gb|EFX32240.1| preprotein translocase subunit SecD [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152124|gb|EFZ38417.1| protein-export membrane protein SecD [Escherichia coli EPECa14]
 gi|323160485|gb|EFZ46433.1| protein-export membrane protein SecD [Escherichia coli E128010]
 gi|323164199|gb|EFZ50006.1| protein-export membrane protein SecD [Shigella sonnei 53G]
 gi|323178329|gb|EFZ63907.1| protein-export membrane protein SecD [Escherichia coli 1180]
 gi|323184766|gb|EFZ70137.1| protein-export membrane protein SecD [Escherichia coli 1357]
 gi|323379749|gb|ADX52017.1| protein-export membrane protein SecD [Escherichia coli KO11]
 gi|324016686|gb|EGB85905.1| protein-export membrane protein SecD [Escherichia coli MS 117-3]
 gi|326341168|gb|EGD64960.1| Protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           1044]
 gi|326346056|gb|EGD69795.1| Protein-export membrane protein SecD [Escherichia coli O157:H7 str.
           1125]
 gi|327254726|gb|EGE66342.1| protein-export membrane protein SecD [Escherichia coli STEC_7v]
 gi|332085753|gb|EGI90917.1| protein-export membrane protein SecD [Shigella dysenteriae 155-74]
 gi|332094558|gb|EGI99604.1| protein-export membrane protein SecD [Shigella boydii 5216-82]
 gi|332341771|gb|AEE55105.1| protein-export membrane protein SecD [Escherichia coli UMNK88]
 gi|332761773|gb|EGJ92052.1| protein-export membrane protein SecD [Shigella flexneri 2747-71]
 gi|332764285|gb|EGJ94521.1| protein-export membrane protein SecD [Shigella flexneri K-671]
 gi|332768513|gb|EGJ98696.1| protein-export membrane protein SecD [Shigella flexneri 2930-71]
 gi|333008061|gb|EGK27537.1| protein-export membrane protein SecD [Shigella flexneri K-218]
 gi|333008603|gb|EGK28071.1| protein-export membrane protein SecD [Shigella flexneri VA-6]
 gi|333022016|gb|EGK41261.1| protein-export membrane protein SecD [Shigella flexneri K-304]
          Length = 604

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601


>gi|254786635|ref|YP_003074064.1| protein-export membrane protein SecF [Teredinibacter turnerae
           T7901]
 gi|237686792|gb|ACR14056.1| protein-export membrane protein SecF [Teredinibacter turnerae
           T7901]
          Length = 308

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 154/284 (54%), Gaps = 4/284 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM  R      SI   + SI  L   GL +G+DF GG  + +   +  DL  VR  L 
Sbjct: 7   INFMGRRKLAAAFSIALVLISIGSLLVKGLAFGLDFTGGTLIELHYPQSADLGKVRDELG 66

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +   +    NF  +++ ++R+Q    D       +     +       + ++  E VG 
Sbjct: 67  EMGYANAVVANFGSDEDVVIRIQS---DGEKIGDSVATQLIQAYGGEEPAQLKRIEYVGS 123

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           +I  E    G +G++ +   ++ Y+ +RF++ F++GA+  L  D+   LG F+LF ++F+
Sbjct: 124 QIGEEFANDGALGMLFALAVVMAYVALRFQFKFSVGAVVALAHDVLIVLGMFSLFQLDFD 183

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +A+VL +IGYS+ND +VV DR+R+N +    +    ++++ S+ +TL R++ TS   
Sbjct: 184 LTVLASVLAVIGYSLNDTIVVSDRIRENFRKIRKAEPI-EVVNISLTQTLDRTLITSGTT 242

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            + ++ + ++GG +I +FA+ +  GI +   SSI++AA I+L +
Sbjct: 243 MLVLVALFIFGGELIHNFALALLIGIGIGTYSSIYVAANIMLAM 286


>gi|238918975|ref|YP_002932489.1| preprotein translocase subunit SecF [Edwardsiella ictaluri 93-146]
 gi|238868543|gb|ACR68254.1| protein-export membrane protein SecF, putative [Edwardsiella
           ictaluri 93-146]
          Length = 322

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 167/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L      I FMR  +    +S L  + S  +++  G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVIDFMRWDYVAFTLSGLLLLASCLVMYVKGFNWGLDFTGGTVIELTVEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             DL+ +R++L      +   QNF   ++ ++R+    G+   Q     +V      I  
Sbjct: 65  APDLNAMRASLVKSGFDEPVVQNFGSSRDIMIRMAPISGN-EGQELGNRIVAVVEQVIDG 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + ++++ I++LIY+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALISILIYVGFRFEWRLALGAVLALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 LGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIVNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLVVVLCLYIFGGAMLKGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|261491626|ref|ZP_05988209.1| preprotein translocase subunit SecF [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261312752|gb|EEY13872.1| preprotein translocase subunit SecF [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 324

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/293 (32%), Positives = 160/293 (54%), Gaps = 4/293 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM+ R+ G   S++ +   I  + T G N+G+DF GG  +    ++P DL+ +R
Sbjct: 16  PYKLIPFMKYRYVGFIFSLIVTALCIFTIATKGFNWGLDFTGGTVIETQFSQPADLAKLR 75

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + LE+   G+   Q    +K+ ++RL    GD     +V+ M+ +K+    P +TI++ E
Sbjct: 76  TELENSGYGNALVQTTGSQKDLMIRLAASAGDMSVGNKVMAMIHQKL---DPNATIKSIE 132

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + +   +LIY+  RF+W  A+G I  L  D+  T+G F+   
Sbjct: 133 FVGPNVGEELTQGAIYATLATLAMLLIYVGTRFEWRLAVGGIVALFHDVLVTIGIFSFLQ 192

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT VAA+L+++GYS+ND +VV+DR+R+N      S S   +    +++TL R++ T
Sbjct: 193 IEIDLTFVAAILSVVGYSLNDSIVVFDRVRENFSKVRRSSSIEIIDIS-LSQTLSRTLMT 251

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S+     VL +   GG  + SF++ +  GI     SSI+IA  + L +   R 
Sbjct: 252 SVTTLFVVLALFYLGGPTLHSFSLALLIGIGFGTYSSIYIAIGVALQLGLKRE 304


>gi|22124900|ref|NP_668323.1| preprotein translocase subunit SecD [Yersinia pestis KIM 10]
 gi|270489480|ref|ZP_06206554.1| protein-export membrane protein SecD [Yersinia pestis KIM D27]
 gi|21957736|gb|AAM84574.1|AE013703_4 protein secretion, membrane protein [Yersinia pestis KIM 10]
 gi|270337984|gb|EFA48761.1| protein-export membrane protein SecD [Yersinia pestis KIM D27]
          Length = 615

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 164/537 (30%), Positives = 288/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P++L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 100 VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LR+ L+++ I   ++R++ N  + + F D + + +    ++   +            
Sbjct: 151 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 199

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +  +     +  V+S   + +V  +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 200 LVFSSNGSNTLKAVMSDERLREVREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 319

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 320 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGATMSNFTKDNIGKPMATLFVEYKDSGKK 378

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 379 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 438

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM+V Y K+G++A  ++  N++L + ++SLL 
Sbjct: 439 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 498

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+NI
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 558

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 559 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 615



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 440 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 556 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 612



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 30/118 (25%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  +GLL ALPN   +                          +     
Sbjct: 4   RYPLWKYLMLIVVIFVGLLYALPNLYGEDPA---------------------VQIT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                   L    D L      + I   S+      I   F D   +    + +   L
Sbjct: 42  GIAASETTLVQVRDVLEK----DNIASKSIALENGAILARFRDPDVQLRAREALVEAL 95


>gi|26246413|ref|NP_752452.1| preprotein translocase subunit SecD [Escherichia coli CFT073]
 gi|91209476|ref|YP_539462.1| preprotein translocase subunit SecD [Escherichia coli UTI89]
 gi|110640669|ref|YP_668397.1| preprotein translocase subunit SecD [Escherichia coli 536]
 gi|117622669|ref|YP_851582.1| preprotein translocase subunit SecD [Escherichia coli APEC O1]
 gi|191173493|ref|ZP_03035020.1| protein-export membrane protein SecD [Escherichia coli F11]
 gi|218557317|ref|YP_002390230.1| preprotein translocase subunit SecD [Escherichia coli S88]
 gi|237707598|ref|ZP_04538079.1| protein-export membrane protein SecD [Escherichia sp. 3_2_53FAA]
 gi|331645581|ref|ZP_08346685.1| protein-export membrane protein SecD [Escherichia coli M605]
 gi|331656462|ref|ZP_08357424.1| protein-export membrane protein SecD [Escherichia coli TA206]
 gi|331681801|ref|ZP_08382434.1| protein-export membrane protein SecD [Escherichia coli H299]
 gi|26106811|gb|AAN78996.1|AE016756_179 Protein-export membrane protein secD [Escherichia coli CFT073]
 gi|91071050|gb|ABE05931.1| protein-export membrane protein SecD [Escherichia coli UTI89]
 gi|110342261|gb|ABG68498.1| protein-export membrane protein SecD [Escherichia coli 536]
 gi|115511793|gb|ABI99867.1| export membrane protein SecD [Escherichia coli APEC O1]
 gi|190906202|gb|EDV65814.1| protein-export membrane protein SecD [Escherichia coli F11]
 gi|218364086|emb|CAR01751.1| SecYEG protein translocase auxillary subunit [Escherichia coli S88]
 gi|222032203|emb|CAP74942.1| Protein-export membrane protein secD [Escherichia coli LF82]
 gi|226898808|gb|EEH85067.1| protein-export membrane protein SecD [Escherichia sp. 3_2_53FAA]
 gi|281177578|dbj|BAI53908.1| preprotein translocase SecD [Escherichia coli SE15]
 gi|294490248|gb|ADE89004.1| protein-export membrane protein SecD [Escherichia coli IHE3034]
 gi|307552313|gb|ADN45088.1| protein-export membrane protein SecD [Escherichia coli ABU 83972]
 gi|323952980|gb|EGB48848.1| protein-export membrane protein SecD [Escherichia coli H252]
 gi|323958601|gb|EGB54304.1| protein-export membrane protein SecD [Escherichia coli H263]
 gi|331045743|gb|EGI17869.1| protein-export membrane protein SecD [Escherichia coli M605]
 gi|331054710|gb|EGI26719.1| protein-export membrane protein SecD [Escherichia coli TA206]
 gi|331081003|gb|EGI52168.1| protein-export membrane protein SecD [Escherichia coli H299]
          Length = 615

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++ +      N    ++ L       G +         +  +   
Sbjct: 369 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGA 428

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++
Sbjct: 429 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANL 487

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+
Sbjct: 488 ILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDE 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +
Sbjct: 545 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 604

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 605 YGGKRVKK 612


>gi|312113470|ref|YP_004011066.1| protein-export membrane protein SecD [Rhodomicrobium vannielii ATCC
           17100]
 gi|311218599|gb|ADP69967.1| protein-export membrane protein SecD [Rhodomicrobium vannielii ATCC
           17100]
          Length = 548

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 191/543 (35%), Positives = 305/543 (56%), Gaps = 18/543 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W  +   +I    ++ ALPN +P S  +  PS     R+ LGLDLRGG+HL+ ++
Sbjct: 6   LHFSRWGAVATILISVASVIFALPNVIPLSTYESLPSWAQLPRMPLGLDLRGGTHLLYQI 65

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D       +LQ    E R  L +  I    +    N++ ++  D    +    K+    Q
Sbjct: 66  DTAQLKKDWLQSIQTESRRSLSEARIAHSGVVIAGNQVRVNLRDPANTDAALTKLKTLAQ 125

Query: 121 GVNSKLNVDPK-----KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
            +++ L             + +T    I++  +Q  I + I +AI +S+E+IR+R+D  G
Sbjct: 126 PLSTSLLTSSGGDTGMDVAVQSTQPGVITLEPTQAGIQRRIENAISRSIEVIRRRVDPQG 185

Query: 176 ISESTIQRLGSHRILIQLPGEQD---PSRLRQLLGTTAKMSFHKVLP-------NNSKKG 225
            +E+TIQ  G      ++  +     P  ++  +GTTAK++F  V          +    
Sbjct: 186 TTEATIQAQGGANGKDRILIQVPGLAPDEVKSRVGTTAKLTFQLVDSSMSAEDAKDHGVP 245

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV---VDISFDEMGARRF 282
               +   ++  G   LV  +V +SG  L  A A +D +        VD  F+  GA  F
Sbjct: 246 PDSQLLPDQERPGQFVLVHKEVIVSGDDLVNAYAGYDSRAGGVGERAVDFEFNSRGAAAF 305

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
             VTR+NIG+P A++LDG+V++APVI   IP G+ QI+GNF +E    LA +LR+G+LP 
Sbjct: 306 ARVTRENIGRPFAIILDGKVISAPVIRSEIPGGRGQITGNFGVEETNRLALLLRSGALPA 365

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
            L+I+EER+VG  LG+DSI  G+ A   G   + LFMI  YG +G+ +  ++ +N+ + +
Sbjct: 366 ALSIIEERSVGPSLGADSIDAGSIAAAVGFAAVSLFMISAYGLFGVFSVIALAVNIAIIM 425

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
           A LSL  ATLT+P IAGIVL +G+AVD+N+L+ ERIREE R  + +  +++ GF RAY+T
Sbjct: 426 ACLSLFHATLTMPGIAGIVLTMGVAVDANVLIYERIREELRTGRGMISAIEAGFDRAYAT 485

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           I DS++TAL+A ++L+ FG G V+GFA+T+   I+ S+FTAI++ R M+   +R  +  +
Sbjct: 486 IIDSHLTALLAALILYAFGSGTVKGFAVTLSFGIVSSLFTAITLTRLMVSTWLRQTRPTA 545

Query: 523 IDI 525
           + I
Sbjct: 546 LHI 548



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 80/176 (45%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I  G +   +   A+ +++   +   F + ++  L ++I   +   +LF 
Sbjct: 374 SVGPSLGADSIDAGSIAAAVGFAAVSLFMISAYGL-FGVFSVIALAVNIAIIMACLSLFH 432

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G +V+  V++Y+R+R+ ++   T       I+   +      + +
Sbjct: 433 ATLTMPGIAGIVLTMGVAVDANVLIYERIREELR---TGRGMISAIEAGFDRAYATIIDS 489

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + A ++ L +  +G   +  FA+ ++FGIV +  ++I +   ++          A
Sbjct: 490 HLTALLAALILYAFGSGTVKGFAVTLSFGIVSSLFTAITLTRLMVSTWLRQTRPTA 545


>gi|114320374|ref|YP_742057.1| preprotein translocase subunit SecD [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226768|gb|ABI56567.1| protein-export membrane protein SecD [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 621

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 168/529 (31%), Positives = 284/529 (53%), Gaps = 39/529 (7%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
             A     P++    +  A+    + LGLDLRGG H +LEVD +      ++ + ++ R+
Sbjct: 98  YTAAMTLTPRTP--AWLRALGAEPMYLGLDLRGGVHFLLEVDVNALREQTVERHVNDFRT 155

Query: 80  FLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL-QGVNSKLNVDPKKNLLVT 137
            L++  I    +   ++  + +SF ++  ++     +          +   D    L+  
Sbjct: 156 LLRQGRIRYGQVEPYEDLAVRVSFREAPARDEALRLLQEDFGDLEFDRDEADGNYYLIAR 215

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
            T+ ++         D+++  ++ Q++  +R R+D++G++E  IQR G+ RI++QLPG Q
Sbjct: 216 ITQDDL---------DEIVQFSVNQNITTLRNRVDELGVAEPVIQRQGAERIVVQLPGVQ 266

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-------DSDGNQYLVEDKVEIS 250
           DP+R +++LG TA + F  V               L        + DGN  +++  V ++
Sbjct: 267 DPARAKEILGATATLEFRLVDMERYPFTGDPEAPRLPPAAELFQERDGNYVVLQRDVMMT 326

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI-- 308
           G  +  A +  D +T  P V+I       R+F  +TR+++G  +AVV   R     ++  
Sbjct: 327 GDRIVHAASGIDQETGGPQVNIRLSGAAGRQFNRITREHVGDLMAVVFIERQSEMVLVND 386

Query: 309 -----------------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                             +       +I+G  + + A  LA +LRAG+L   ++IVEER 
Sbjct: 387 EPQREVTEVREVISVANIREPLGASFRITGLDSTQEARNLALLLRAGALAAPIDIVEERT 446

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +G  LG++++ +G  A+V G  L+V+FM   Y  +GLVA+ ++  N++L +A+LSLL AT
Sbjct: 447 IGPSLGAENVRQGFLAVVIGFALVVVFMAFYYRVFGLVANLALITNLVLIVAVLSLLQAT 506

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAGIVL +G+AVD+N+L+ +RIREE     S+  ++D G+ +A STI D+N+T L
Sbjct: 507 LTLPGIAGIVLTVGMAVDANVLIFQRIREELHAGSSIQRAIDQGYGKALSTIADANVTTL 566

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           IA VVLF FG G V+GFA+T+ + ++ SMFTAI   RA++  I    K 
Sbjct: 567 IAAVVLFVFGTGPVQGFAVTLSIGLVTSMFTAILGTRAVINLIYGGNKR 615



 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 90/206 (43%), Gaps = 4/206 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              Q      +  +   +     I     +GP +  E +R+G + V+I    +++++   
Sbjct: 418 DSTQEARNLALLLRAGALAAPIDIVEERTIGPSLGAENVRQGFLAVVIGFALVVVFMAFY 477

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F L A   LI ++   +   +L      L  +A ++  +G +V+  V+++ R+R+ 
Sbjct: 478 YRV-FGLVANLALITNLVLIVAVLSLLQATLTLPGIAGIVLTVGMAVDANVLIFQRIREE 536

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       S +  ID+   + L      ++   I+ + + V+G   +  FA+ ++ G+V 
Sbjct: 537 LHA---GSSIQRAIDQGYGKALSTIADANVTTLIAAVVLFVFGTGPVQGFAVTLSIGLVT 593

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +  ++I     ++  IY    + A +
Sbjct: 594 SMFTAILGTRAVINLIYGGNKRVAEL 619



 Score = 41.6 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 48/372 (12%), Positives = 98/372 (26%), Gaps = 34/372 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   +G L ALPN   +    +                        E D
Sbjct: 3   RYPLWKYLILIVAISLGALYALPNLFGEDPTLQIS--------------------TAEGD 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
             D      Q     L  FL+++G+        + +  + F     + + AD V+  L +
Sbjct: 43  PPD------QETQQSLLRFLEEQGVPAIGAETREGQYLIRFDSVDHQMDAADLVSAKLGR 96

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           G  + + + P+    +     E   +             +   +E+    + +  +    
Sbjct: 97  GYTAAMTLTPRTPAWLRALGAEPMYLGLDL------RGGVHFLLEVDVNALREQTVERHV 150

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                  R      G+ +P     +  +  +           ++ F        ++DGN 
Sbjct: 151 NDFRTLLRQGRIRYGQVEPYEDLAVRVSFREAPARDEALRLLQEDFGDLEFDRDEADGNY 210

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           YL+    +     +   + N +  T +  VD         +     R  +  P       
Sbjct: 211 YLIARITQDDLDEIVQFSVNQNITTLRNRVDELGVAEPVIQRQGAERIVVQLPGVQDPAR 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIE-TAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                                 FT +  A  L              +V +R+V       
Sbjct: 271 AKEILGATATLEFRLVDMERYPFTGDPEAPRLPPAAELFQERDGNYVVLQRDVMMTGDRI 330

Query: 360 SIYKGTCAIVAG 371
                      G
Sbjct: 331 VHAASGIDQETG 342


>gi|294669308|ref|ZP_06734387.1| protein-export membrane protein SecD [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308718|gb|EFE49961.1| protein-export membrane protein SecD [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 615

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 168/506 (33%), Positives = 274/506 (54%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           + +   P  M     N + LGLDLRGG H  ++VD    +      Y+ ++R  L++E I
Sbjct: 104 NQIANTPEWMAKIRANPMFLGLDLRGGVHFTMQVDMKAAMQKTFDRYAGDIRRELRREKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            V ++ Q  N + + F D      I   +                    +T+    + + 
Sbjct: 164 RVGTIVQNDNSLAVPFQDEADLNKILPTLKNMFPEA------------TLTSDGSRLILT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +D +   A+ Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEQAVDNIRKQAVAQNINTLHNRVNELGVAEPIIQQAGVDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF--------LRDSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +                        +  L+  +VE++G  ++ A 
Sbjct: 272 GRTATLEVRMVSDDTNALQAALDGNVPEGYELLNTSGDMPHPLLISKQVELTGEDIDDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            + + K  +P V +SF+  GA  F ++TR+N+GK +A+VL  +    V+TAP IN+ IP+
Sbjct: 332 PDRNEKG-QPGVSVSFNNSGAAIFADLTRNNVGKRMAMVLIDQGKAEVVTAPQINEPIPN 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           GK  ISG+ +   A  ++ +LRAGSL   + IVEER +GA LG+++I KG  + + G   
Sbjct: 391 GKTIISGSMSFAEAEDISLLLRAGSLAAPMEIVEERTIGASLGAENIKKGVDSTLWGFAA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           + LFM+V Y   G+ +  ++  N++L +A LS LGATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VALFMVVYYRLMGVFSVIALVANILLLVAALSFLGATLTLPGIAAMALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++  G+  A+ TI DSNIT+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRDGAKPQAAIFEGYKHAWDTIVDSNITSLIAGIALLLFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SMF+++ + R  +      K+ 
Sbjct: 571 GILTSMFSSVVVSRMFVNLWYGRKRK 596



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 85/208 (40%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +G  +  E I+KG+   +    A+ 
Sbjct: 393 TIISGSMSFAEAEDISLLLRAGSLAAPMEIVEERTIGASLGAENIKKGVDSTLWGFAAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + ++    + ++  L+ +I   +   +  G    L  +AA+   +G +++  V++ 
Sbjct: 453 LFMVVYYRL-MGVFSVIALVANILLLVAALSFLGATLTLPGIAAMALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++        +  I +         V +++ + I+ + + ++G   +  FA+  
Sbjct: 512 ERIREELRDGAK---PQAAIFEGYKHAWDTIVDSNITSLIAGIALLLFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ ++   +   Y  + K
Sbjct: 569 CLGILTSMFSSVVVSRMFVNLWYGRKRK 596


>gi|315616651|gb|EFU97268.1| protein-export membrane protein SecF [Escherichia coli 3431]
 gi|323164200|gb|EFZ50007.1| protein-export membrane protein SecF [Shigella sonnei 53G]
 gi|323170491|gb|EFZ56141.1| protein-export membrane protein SecF [Escherichia coli LT-68]
 gi|323178328|gb|EFZ63906.1| protein-export membrane protein SecF [Escherichia coli 1180]
          Length = 304

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 161/286 (56%), Gaps = 1/286 (0%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           MR  +W  GIS L  I +I ++   G N+G+DF GG  + +   +P ++ V+R  L+   
Sbjct: 1   MRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAG 60

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             +   QNF    + +VR+    G++  Q    +++K         + ++  E VGP + 
Sbjct: 61  FEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVG 120

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  TLG  +LF IE +LT 
Sbjct: 121 ADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTI 180

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +TL R++ TS    + 
Sbjct: 181 VASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSGTTLMV 239

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R 
Sbjct: 240 ILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 285


>gi|86145578|ref|ZP_01063908.1| protein export protein SecD [Vibrio sp. MED222]
 gi|218708623|ref|YP_002416244.1| preprotein translocase subunit SecD [Vibrio splendidus LGP32]
 gi|85836549|gb|EAQ54675.1| protein export protein SecD [Vibrio sp. MED222]
 gi|218321642|emb|CAV17594.1| Protein-export membrane protein SecD [Vibrio splendidus LGP32]
          Length = 618

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 154/524 (29%), Positives = 275/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L++E I
Sbjct: 104 NLAASTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMQKLVGQQEEAFRSELREEKI 163

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   +          +    Q        D       +     +  
Sbjct: 164 RYRAIRPSGKDAVEVILRNEEQLAEAKSLLQSKHQ--------DMTFVDSESNGRFSLIA 215

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 216 NFTETRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275

Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V  +             G    +D DG   +++ +V + G  +    ++
Sbjct: 276 LGATATLEFREVDSSADLAAAASGRAPAGSEIKQDRDGRPVVLKKRVILGGSSITD-ASS 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    +R NIGK +A V                       
Sbjct: 335 SVDEYGRPQVNISLDSEGGSKMSTFSRQNIGKLMATVFAEYKDSGRKTPEGRVILSKHEE 394

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 395 VINQATIQSALGRNFRITGIDSTAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A+V G+  ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 455 MGIMAMVWGMAAVMLFTLLYYRTFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 514

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT L+  ++LF  G
Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLLTAIILFAVG 574

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + IL SMFTAI   R ++  +   K++K + I
Sbjct: 575 TGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRVKKLSI 618



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 90/213 (42%), Gaps = 5/213 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G           +  +   ++   +I     +GP + ++ I  GI+ ++    A
Sbjct: 407 RNFRITGIDSTAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIMAMVWGMAA 466

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 467 VMLFTLLYYR-TFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   ++ + +   G   I  FA
Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLLTAIILFAVGTGAIKGFA 582

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++ GI+ +  ++I     I+  +Y  +    
Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLMYGGKRVKK 615


>gi|253999939|ref|YP_003052002.1| protein-export membrane protein SecD [Methylovorus sp. SIP3-4]
 gi|253986618|gb|ACT51475.1| protein-export membrane protein SecD [Methylovorus sp. SIP3-4]
          Length = 609

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 166/509 (32%), Positives = 281/509 (55%), Gaps = 24/509 (4%)

Query: 30  SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++ R PS +       + LGLDLRGG H +L+VD    ++   + Y  + RS L+KE +
Sbjct: 104 NLISRSPSWLRSIGALPMYLGLDLRGGVHFLLQVDMKAALDKAAERYVGDFRSALRKERV 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +    + + F+ +         +             D     L +  +K +   
Sbjct: 164 AYMGVSREGQAVQVRFSSAAELAKAQKILNKEY--------PDLTFRTLDSGNDKLLIAT 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+     ++   A++Q+++ +  R++++G++E  IQ+ G  RI+IQLPG QD ++ +++L
Sbjct: 216 LNLQAQKRIQEFALKQNIQTLHNRVNELGVAEPIIQQQGLDRIVIQLPGVQDTAKAKEIL 275

Query: 207 GTTAKMSFHKVL---------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           G TA +    V             SK    FG  +  + +G   LV+  V ++G ++  A
Sbjct: 276 GRTATLEIRMVDEEKSDMTTLDKASKGQVPFGDEYYVERNGQPILVKKNVVLTGDYITDA 335

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIP 313
               D +  + VV ++ D  GAR F + T++N+GK +           V+TAPVI + I 
Sbjct: 336 GPGLDQQNGESVVHVTLDGRGARIFKQATKENVGKRMAILLIEKGQAEVITAPVIREEIG 395

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
            G+ QISG   ++ A  ++ +LRAG+L   ++I+EER VG  +G ++I +G  + + G  
Sbjct: 396 GGRVQISGMANVQEATDVSLLLRAGALAAPMDIIEERTVGPSMGEENIKRGWHSTLWGFA 455

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
            I +FMI+ Y  +G V+  ++ +N++L  A+LSLL ATLTLP +A I L +G+A+D+N+L
Sbjct: 456 AIAVFMIIYYMLFGSVSVLALGVNLLLLTAVLSLLQATLTLPGLAAIALTLGMAIDANVL 515

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
           +NERIREE R   +   ++  G+ RA+ TI DSN+T +IA + LF FG G V+GFA+   
Sbjct: 516 INERIREELRNGNTPQAAIHAGYDRAFDTILDSNVTTMIAGLALFMFGSGPVKGFAVVHV 575

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKS 522
           L IL SMF+A+ + RA++  I  Y++  S
Sbjct: 576 LGILTSMFSAVVVSRALVNLIYGYRRKIS 604



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 89/205 (43%), Gaps = 4/205 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             Q      +  +   +     I     VGP +  E I++G    +    A+ +++ I +
Sbjct: 406 NVQEATDVSLLLRAGALAAPMDIIEERTVGPSMGEENIKRGWHSTLWGFAAIAVFMIIYY 465

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              F   ++  L +++       +L      L  +AA+   +G +++  V++ +R+R+ +
Sbjct: 466 -MLFGSVSVLALGVNLLLLTAVLSLLQATLTLPGLAAIALTLGMAIDANVLINERIREEL 524

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      + +  I    +      + +++   I+ L + ++G   +  FA+    GI+ +
Sbjct: 525 R---NGNTPQAAIHAGYDRAFDTILDSNVTTMIAGLALFMFGSGPVKGFAVVHVLGILTS 581

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
             S++ ++  ++  IY +R K +++
Sbjct: 582 MFSAVVVSRALVNLIYGYRRKISKL 606



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  IL  +   +G++ +LPN   +S                           ++V 
Sbjct: 3   RYPLWKYILVLITLVLGVVYSLPNLFGESPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         ++   LK+E I   ++    N + + F ++  + N  D +   L
Sbjct: 38  TAKSSAKLDPALLGQVEDILKQEKITYEAVFLDTNGVKVRFENADTQINAKDVLQGKL 95


>gi|186894297|ref|YP_001871409.1| preprotein translocase subunit SecD [Yersinia pseudotuberculosis
           PB1/+]
 gi|186697323|gb|ACC87952.1| protein-export membrane protein SecD [Yersinia pseudotuberculosis
           PB1/+]
          Length = 604

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 163/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P++L +   +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 89  VIALNLAPATPSWLAKLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LR+ L+++ I   ++R++ N  + + F D + + +    ++   +            
Sbjct: 140 MDTLRTDLREKNIPYATVRKLDNYGVEVRFRDDKARNDAISYLSSRHR-----------D 188

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +  +     +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 189 LVFSSNGSNTLKAVMSDERLREAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 248

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNTNVDASVAASGRVPGDSEVKNTREGRPVVLYKRV 308

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 309 ILTGDHITDSTSSTDEYN-QAQVNISLDSAGGATMSNFTKDNIGKPMATLFVEYKDSGKK 367

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 368 DANGRSILVKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEE 427

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LGS +I +G  A + GL + +LFM+V Y K+G++A  ++  N++L + ++SLL 
Sbjct: 428 RTIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYRKFGVIASTALMANLVLIVGVMSLLP 487

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+NI
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEYRNGRTIQQAIHEGYKGAFSSIVDANI 547

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  + I
Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 429 TIGPTLGSQNIAQGLEACLWGLAVSILFMVVYYR-KFGVIASTALMANLVLIVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YRNGRTIQQAIHEGYKGAFSSIVD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 545 ANITTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|313201913|ref|YP_004040571.1| protein-export membrane protein secd [Methylovorus sp. MP688]
 gi|312441229|gb|ADQ85335.1| protein-export membrane protein SecD [Methylovorus sp. MP688]
          Length = 598

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 166/509 (32%), Positives = 281/509 (55%), Gaps = 24/509 (4%)

Query: 30  SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++ R PS +       + LGLDLRGG H +L+VD    ++   + Y  + RS L+KE +
Sbjct: 93  NLISRSPSWLRSIGALPMYLGLDLRGGVHFLLQVDMKAALDKAAERYVGDFRSALRKERV 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +    + + F+ +         +             D     L +  +K +   
Sbjct: 153 AYMGVSREGQAVQVRFSSAAELAKAQKILNKEY--------PDLTFRTLDSGNDKLLIAT 204

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+     ++   A++Q+++ +  R++++G++E  IQ+ G  RI+IQLPG QD ++ +++L
Sbjct: 205 LNLQAQKRIQEFALKQNIQTLHNRVNELGVAEPIIQQQGLDRIVIQLPGVQDTAKAKEIL 264

Query: 207 GTTAKMSFHKVL---------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           G TA +    V             SK    FG  +  + +G   LV+  V ++G ++  A
Sbjct: 265 GRTATLEIRMVDEEKSDMTTLDKASKGQVPFGDEYYVERNGQPILVKKNVVLTGDYITDA 324

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQAIP 313
               D +  + VV ++ D  GAR F + T++N+GK +           V+TAPVI + I 
Sbjct: 325 GPGLDQQNGESVVHVTLDGRGARIFKQATKENVGKRMAILLIEKGQAEVITAPVIREEIG 384

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
            G+ QISG   ++ A  ++ +LRAG+L   ++I+EER VG  +G ++I +G  + + G  
Sbjct: 385 GGRVQISGMANVQEATDVSLLLRAGALAAPMDIIEERTVGPSMGEENIKRGWHSTLWGFA 444

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
            I +FMI+ Y  +G V+  ++ +N++L  A+LSLL ATLTLP +A I L +G+A+D+N+L
Sbjct: 445 AIAVFMIIYYMLFGSVSVLALGVNLLLLTAVLSLLQATLTLPGLAAIALTLGMAIDANVL 504

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
           +NERIREE R   +   ++  G+ RA+ TI DSN+T +IA + LF FG G V+GFA+   
Sbjct: 505 INERIREELRNGNTPQAAIHAGYDRAFDTILDSNVTTMIAGLALFMFGSGPVKGFAVVHV 564

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKS 522
           L IL SMF+A+ + RA++  I  Y++  S
Sbjct: 565 LGILTSMFSAVVVSRALVNLIYGYRRKIS 593



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 89/205 (43%), Gaps = 4/205 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             Q      +  +   +     I     VGP +  E I++G    +    A+ +++ I +
Sbjct: 395 NVQEATDVSLLLRAGALAAPMDIIEERTVGPSMGEENIKRGWHSTLWGFAAIAVFMIIYY 454

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              F   ++  L +++       +L      L  +AA+   +G +++  V++ +R+R+ +
Sbjct: 455 -MLFGSVSVLALGVNLLLLTAVLSLLQATLTLPGLAAIALTLGMAIDANVLINERIREEL 513

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      + +  I    +      + +++   I+ L + ++G   +  FA+    GI+ +
Sbjct: 514 R---NGNTPQAAIHAGYDRAFDTILDSNVTTMIAGLALFMFGSGPVKGFAVVHVLGILTS 570

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
             S++ ++  ++  IY +R K +++
Sbjct: 571 MFSAVVVSRALVNLIYGYRRKISKL 595


>gi|260776669|ref|ZP_05885564.1| protein-export membrane protein SecD [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607892|gb|EEX34157.1| protein-export membrane protein SecD [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 607

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 152/529 (28%), Positives = 279/529 (52%), Gaps = 37/529 (6%)

Query: 25  NFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL 81
           N +  ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L
Sbjct: 88  NIVALNLAPATPDWLEAIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSEL 147

Query: 82  KKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           ++E I   ++R    + + +   +     +    +         + + D       +   
Sbjct: 148 REEKIRYRAIRPSGKEAVEVLLRNEEQLADAKRLLQ--------QNHPDMTFVDSDSDGR 199

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
             ++   ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +
Sbjct: 200 FTLTATFTEQRLTEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTA 259

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLN 255
           R +++LG TA + F +V                G    +D DG   +++ +V + G  + 
Sbjct: 260 RAKEILGATATLEFREVDDKADLAAAASGRAPAGSEIKQDRDGRPVVLKKRVILGGSSIT 319

Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------- 302
              ++   +  +P V+IS D  G  +    ++ NIGK +A V                  
Sbjct: 320 D-ASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRKTADGRVIL 378

Query: 303 -----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G
Sbjct: 379 TKHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMG 438

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPS 416
             +I  G  A + G+  ++LF ++ Y K+GL+A+ ++ +N++L + ++S++  AT+TLP 
Sbjct: 439 QQNIDMGIMACIWGMAAVMLFTLLYYRKFGLIANTALMVNLVLIIGVMSMIPGATMTLPG 498

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL +G+AVD+N+L+ ERIREE R  ++   ++  G++ A+STI D+NIT LI  ++
Sbjct: 499 IAGIVLTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADANITTLITAII 558

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LF  G GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 559 LFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRINKLSI 607



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 101/248 (40%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     ++   +        N    ++ L R     G   A       +  +   
Sbjct: 361 FAEYKDSGRKTADGRVILTKHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGA 420

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI+  I    A++++  + ++  F L A T L++++
Sbjct: 421 LIAPISIVEERTIGPSMGQQNIDMGIMACIWGMAAVMLFTLLYYR-KFGLIANTALMVNL 479

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 480 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRD---GRNPQQAIHQ 536

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 537 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLM 596

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 597 YGGKRINK 604


>gi|87121907|ref|ZP_01077792.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Marinomonas sp. MED121]
 gi|86162705|gb|EAQ63985.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Marinomonas sp. MED121]
          Length = 303

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 158/287 (55%), Gaps = 6/287 (2%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I FM  R     +SI+  + S+  L   GL +G+DF GG  + V      +L  +
Sbjct: 1   MKTSNIPFMGMRKPVALLSIILVVASLISLAVKGLEFGLDFTGGTLVEVGYQVAPELDQI 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L   Q  D+  Q F    + +VR+            + + V   +        +  +
Sbjct: 61  RALLAENQYDDVVVQTFGANTDIVVRMANVY-----TPTLGDEVLAVLRSDTASVELLRS 115

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E VG ++  EL  +G +G++++   +++Y+ +RF++ F++ ++  L  D+  TLG F++ 
Sbjct: 116 EFVGAQVGEELREQGGLGMLLALAIVMLYVAVRFQFKFSVASVAALAHDVIITLGIFSIM 175

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G EF+LT +AA+L +IGYS+ND +VV DR+R+N ++    I   DLI++SIN+TLGR++ 
Sbjct: 176 GFEFDLTVLAALLAVIGYSLNDTIVVCDRIRENFRIM-REIEPVDLINESINQTLGRTLI 234

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           TS+     +L +  +GG  I +FA  +  G+++   SS+F+AA +LL
Sbjct: 235 TSLTTIFVLLVLFFFGGEAIHNFAFALLIGVIIGTYSSVFVAANLLL 281


>gi|320173774|gb|EFW48957.1| Protein-export membrane protein SecD [Shigella dysenteriae CDC
           74-1112]
          Length = 604

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKRHS-----------DLVISSQGSNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 601


>gi|302391496|ref|YP_003827316.1| protein translocase subunit secF [Acetohalobium arabaticum DSM
           5501]
 gi|302203573|gb|ADL12251.1| protein translocase subunit secF [Acetohalobium arabaticum DSM
           5501]
          Length = 290

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/292 (32%), Positives = 155/292 (53%), Gaps = 7/292 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           ++ +  R     IS L  I  +  L   GLN GIDF GG  +    ++ V    +R  L 
Sbjct: 1   MEIIGKRKIWFIISALIIIVGLGSLVMQGLNLGIDFTGGTLMEFTFDKEVTTGQIREVLA 60

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
              +   S     GE   L+R          +   +  V+  I +    + +  TE+VGP
Sbjct: 61  GFDLDKKSVVQNTGEMGILIRTV------NLRQDEITEVQSAIKDKYSSAEMLRTEMVGP 114

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I  EL  K    ++I+AIA+++YI  RF++ FA+ A+  L  D+   +G F+L G E  
Sbjct: 115 AIGSELKSKAYWALLIAAIAIVLYISYRFEFKFAIAALMALAHDVLIVIGSFSLVGEEVG 174

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
              +AA+LT++GYS+ND +V++DR+R+    Y    SF DL +K++ +TL RS+ TSM  
Sbjct: 175 SPFIAALLTVVGYSINDTIVIFDRIRE-TVKYRDKESFADLNNKAVLDTLPRSINTSMTT 233

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +S+L + ++GG+ I  F + +  GI+    SSIFIA+P+L+ I  W+ +  
Sbjct: 234 LVSILAILIFGGATIKPFMLALLIGILSGTYSSIFIASPVLVEIDAWKKRRN 285


>gi|52842218|ref|YP_096017.1| preprotein translocase subunit SecD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629329|gb|AAU28070.1| protein export protein SecD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|307610725|emb|CBX00332.1| hypothetical protein LPW_20581 [Legionella pneumophila 130b]
          Length = 618

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 175/525 (33%), Positives = 280/525 (53%), Gaps = 38/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     + +  GLDLRGG H +LEVD +  ++   +     +   L++ GI
Sbjct: 103 NLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREAGI 162

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +R + +K I L F DS   EN   ++   +  V            + T T+  I  
Sbjct: 163 RYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDV----------VFVKTKTQNSILG 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +S   ++ +  + IEQ+M I+R R++++G+ E+ +Q+ G+ R+ + LPG QD +R +Q+
Sbjct: 213 AISPAELNSIRQNTIEQTMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + FH V   N             +      DG+  L++ +V +SG  +  A ++
Sbjct: 273 LGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVVLSGDSITSAVSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGR 301
           FD +T  P V I     G   F +VTR+NIGK +                    V     
Sbjct: 333 FDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEE 392

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            + +  + Q       QI+G    + A  LA +LRAG+LP  +  VEER VG  LG ++I
Sbjct: 393 RVISAPVIQNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENI 452

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G  ++  G+ LI++ M+V Y  +GL+AD ++ LN++   ALLS++ ATLTLP IAGIV
Sbjct: 453 RRGLISLEVGMGLILVLMLVYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R   S   ++  G+ RA+STI D+N+T LI  ++LF  G
Sbjct: 513 LTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            G VRGFA+ + L +L SM T I+  RA++ +    + +K + I 
Sbjct: 573 TGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIG 617



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 97/255 (38%), Gaps = 4/255 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G     V          +    + +   +    +    +N L       G + ++     
Sbjct: 363 GKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVIQNALGSNFQITGLTDSKEASNL 422

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +   +           VGP + +E IR+G++ + +    +L+ + + + + F L A
Sbjct: 423 ALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHF-FGLIA 481

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L+L++       ++      L  +A ++  +G +V+  V++Y+R+R+ ++     +S
Sbjct: 482 DIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELR---NGLS 538

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +  I           +  ++   I  + +   G   +  FA+ ++ G++ +  + I   
Sbjct: 539 PQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYT 598

Query: 817 APILLFIYDWRAKNA 831
             I+ + Y  R    
Sbjct: 599 RAIVNWYYGGRNVKK 613



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 27/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++  +I  IG + A+PN   ++ +                           V 
Sbjct: 4   KYPLWKNLMLIVIAVIGFVYAIPNLYTENPV---------------------------VQ 36

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                +   +   +++ S LK   +   S+   ++ + + F+ +  +    D +   L
Sbjct: 37  ISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSSTDSQLLARDVIKNSL 94


>gi|119384156|ref|YP_915212.1| preprotein translocase subunit SecF [Paracoccus denitrificans
           PD1222]
 gi|119373923|gb|ABL69516.1| protein translocase subunit secF [Paracoccus denitrificans PD1222]
          Length = 330

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 103/307 (33%), Positives = 169/307 (55%), Gaps = 7/307 (2%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              R  L+PD  +  F R ++   G+S    + S+ +L   GLN+GIDFKGG  +   + 
Sbjct: 1   MAFRLKLVPDNTSFNFFRWQWLTFGVSAAAMVGSVLVLLVMGLNFGIDFKGGTTIRTESP 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGE------KNFLVRLQYQPGDSVAQTRVLEMVKK 640
              ++   R  +  L +GD+S                ++R+             L  ++ 
Sbjct: 61  TAFEVGEYRQAMSDLDLGDVSITEVFDPSFGETKHVAMIRIGTTDETGSVTPAQLNEIEA 120

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +  + P       E VGPK+S ELI+  +  V  + I ++ YIW+RF+W FALGA+ +L
Sbjct: 121 ALKTVDPQVAFAAVESVGPKVSGELIKTALYAVGAATIGIMFYIWLRFEWQFALGAVISL 180

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           I D+  T+G F+LF + F+LT +AA+LT +G+S ND VVV+DR+R+N+  Y T     DL
Sbjct: 181 IHDVLLTVGLFSLFQLRFDLTTIAALLTTLGFSCNDTVVVFDRLRENLIKYKTR-PLLDL 239

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ + NETL R++ T++   I++  M ++GG VI  F I M +G++V   S+I++A  I+
Sbjct: 240 MNLTCNETLSRTIMTAVTTGIALTAMLIFGGDVIRDFVIAMLWGVIVGCYSTIYVAKNIV 299

Query: 821 LFIYDWR 827
           L++   R
Sbjct: 300 LWLGVKR 306


>gi|154148803|ref|YP_001406063.1| preprotein translocase subunit SecF [Campylobacter hominis ATCC
           BAA-381]
 gi|153804812|gb|ABS51819.1| protein-export membrane protein SecF [Campylobacter hominis ATCC
           BAA-381]
          Length = 323

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 158/285 (55%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM+ R+     S +  + S+ LLF  G NYGIDF GG  + V  ++  DL+++R  + 
Sbjct: 10  YNFMKFRYAAFAFSAILMLGSMFLLFFQGFNYGIDFSGGTLIQVKYDQKADLALIRKTIN 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +     +     G    +V       D       L     +I +      I+  ++VGP
Sbjct: 70  KVDFLKDAAVTEFGSDQEIVIRYSSAHDK--VQENLNAKMNEILKPTGNFEIRRVDVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  +L +KGI+ V +S + +LIYI +RF+W FA+ AI +   D+  T+G   LF I+FN
Sbjct: 128 KVGDDLKQKGIMAVAVSLVLILIYIAVRFEWRFAIAAIFSEFHDVIITIGAIILFKIDFN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+LT++GYS+ND ++V+DR+R+ +K  +      D+I+++++ TL R++ TS   
Sbjct: 188 LEILAAILTILGYSLNDTIIVFDRIREGIKE-SKFAKINDVINEAVSATLSRTILTSFTT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            ISV  + ++GG +I +F+  M  GIV    SS FIAA  L++  
Sbjct: 247 LISVAILLLFGGDMIYNFSFVMMIGIVFGTFSSTFIAAQSLIWFK 291


>gi|261856764|ref|YP_003264047.1| protein-export membrane protein SecD [Halothiobacillus neapolitanus
           c2]
 gi|261837233|gb|ACX97000.1| protein-export membrane protein SecD [Halothiobacillus neapolitanus
           c2]
          Length = 620

 Score =  212 bits (539), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 162/518 (31%), Positives = 276/518 (53%), Gaps = 35/518 (6%)

Query: 32  LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
             R+   +    + LGLDLRGG H ++++D    +   L+   D +R  L++  I   + 
Sbjct: 107 APRWMQNLGAKPMYLGLDLRGGVHFLMQIDMQAAIKTALERRVDGMRGDLRQANIRYVAA 166

Query: 92  -RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
             +  ++I L F D+  ++              +    + K +      +  ++   +  
Sbjct: 167 DVENGDEIALRFPDAAARDAALK--------SMAGNYPELKFSTDERNGQPFLTAKFTDV 218

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
                   A++Q++  +R R++++G++E  IQ+ G  RI+++LPG QD  R ++++G TA
Sbjct: 219 GATAERKAAVDQNITTLRNRVNELGVAEPLIQQQGDDRIVVELPGIQDTVRAKEIIGATA 278

Query: 211 KMSFHKVL-------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            + F  V                    R   + DG   L++ +V ++G  + GA++ FD 
Sbjct: 279 TLEFRLVSGTPTDWVDAEQSGRVPPDARLYHEKDGRPVLLKRQVIVTGDRITGASSGFDQ 338

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI--------------- 308
           ++  P V ++ D  GARR  ++T  NIGK + VV         ++               
Sbjct: 339 RSGSPAVFVNLDGQGARRMADITGQNIGKQMGVVFIEHRTETKIVDGKPVKDKKVIQQVI 398

Query: 309 ----NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                Q   + + QI+G  + E A  LA +LRAG+L   ++IVEER VG  LG+ +I  G
Sbjct: 399 NVATIQDQLANRFQITGLDSPEEARDLALLLRAGALRAPMDIVEERTVGPSLGAQNIQSG 458

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             A + G  L+ +FM++ Y  +G+ A  ++ +N+IL +A+LS+L ATLTLP IAG+VL +
Sbjct: 459 VNASILGFALVAVFMLIYYRVFGVTAIVALGVNLILIVAVLSMLQATLTLPGIAGMVLTL 518

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+NERIREE R   +   ++  G+ RA++TI DS++T L+A +VLF  G GA
Sbjct: 519 GIAVDANVLINERIREELRNGLTPHAAIKAGYERAFATIIDSHVTTLLAAIVLFALGAGA 578

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           V+GFA+T+ + IL S+FTAI + RA++  I   +   +
Sbjct: 579 VKGFAVTLTIGILASLFTAIMVTRALVNLIYGRRVRLN 616



 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 100/281 (35%), Gaps = 4/281 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S    +           +      G     V      +  +V       +       N  
Sbjct: 342 SPAVFVNLDGQGARRMADITGQNIGKQMGVVFIEHRTETKIVDGKPVKDKKVIQQVINVA 401

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             ++ L       G    +      +  +   +     I     VGP +  + I+ G+  
Sbjct: 402 TIQDQLANRFQITGLDSPEEARDLALLLRAGALRAPMDIVEERTVGPSLGAQNIQSGVNA 461

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I+    + +++ I ++  F + AI  L +++   +   ++      L  +A ++  +G 
Sbjct: 462 SILGFALVAVFMLIYYRV-FGVTAIVALGVNLILIVAVLSMLQATLTLPGIAGMVLTLGI 520

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +V+  V++ +R+R+ ++     ++    I           + + +   ++ + +   G  
Sbjct: 521 AVDANVLINERIREELR---NGLTPHAAIKAGYERAFATIIDSHVTTLLAAIVLFALGAG 577

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +  FA+ +  GI+ +  ++I +   ++  IY  R +  +I
Sbjct: 578 AVKGFAVTLTIGILASLFTAIMVTRALVNLIYGRRVRLNKI 618


>gi|237749368|ref|ZP_04579848.1| preprotein translocase subunit SecF [Oxalobacter formigenes OXCC13]
 gi|229380730|gb|EEO30821.1| preprotein translocase subunit SecF [Oxalobacter formigenes OXCC13]
          Length = 313

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 152/302 (50%), Gaps = 2/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  L+  GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIKKDIPFMRHALIFNIISLITFLAAVFFLWHKGLHLSVEFTGGTVMEVNYQKAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  +  L  GD       G     V +       V        V   +T+  P   
Sbjct: 61  LEGIRGTIRELGFGDDFQVQNFGRAQD-VMINLPLQKDVTSAEQSARVMAALTQQNPDVH 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++  EL   G++ + +  I ++IY+  RF+W +A+ AI   + DI   LGF
Sbjct: 120 LQRVEFVGPQVGDELTHNGLMALGMVVIGIIIYLAFRFEWKYAISAIIANLHDIVIILGF 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ V+++DR+R+N +      S +++++ +I  T+ 
Sbjct: 180 FAFFQWEFSLSVLAAVLAILGYSVNESVIIFDRIRENFRKMRK-ASVKEIVNHAITSTIS 238

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R+V T     I VL M ++GG  + +FAI +  GI     SS+F+AA I +++   R   
Sbjct: 239 RTVITHGCTQIMVLSMLIFGGPTLHNFAIALTIGICFGIYSSVFVAAAIAIWLGIKREDL 298

Query: 831 AR 832
            +
Sbjct: 299 VK 300


>gi|229523434|ref|ZP_04412841.1| protein-export membrane protein SecD [Vibrio cholerae TM 11079-80]
 gi|229339797|gb|EEO04812.1| protein-export membrane protein SecD [Vibrio cholerae TM 11079-80]
          Length = 617

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 152/523 (29%), Positives = 276/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       +     +   
Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 395 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHHGYANAFSTIADANITTLITAIILFAVGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G+V+GFAIT+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 GSVKGFAITLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 96/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I  
Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHH 546

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   +  FAI ++ GI+ +  ++I     I+  +
Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGSVKGFAITLSIGILTSMFTAIVGTRCIVNLL 606

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 607 YGGKRINK 614



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   +  L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D +   L K  +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDIISEAL 95


>gi|222528641|ref|YP_002572523.1| protein-export membrane protein SecF [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455488|gb|ACM59750.1| protein-export membrane protein SecF [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 310

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 149/303 (49%), Gaps = 9/303 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R +   +SIL  +  +   F  GLNY IDF GG  L +  ++      +  
Sbjct: 1   MTKIDFMGKRKYFYIVSILVMVIGLISYFVQGLNYDIDFTGGTVLEINLHKVPTAQEISE 60

Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI------TEIVPL 648
              L     G  +      E    + +         +T + +  + K+         +  
Sbjct: 61  LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKKKTELSKETRDKLFGEIAKKYNLKK 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + + + VG  IS EL  + I  V+I++I MLIYI IRF++ F   A+  LI D+   L
Sbjct: 121 EDLISYQNVGATISSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             + LF I  N T +AA+LT++GYS+ND +VV+DR+R+N ++    +  +DL++ S+N+T
Sbjct: 181 TVYTLFKIPLNSTFIAAILTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +GRS+ T+M+  I ++ + + G   I  FA P+  G++    SSIFIA  +         
Sbjct: 240 IGRSIATAMSVIIVLVVLYIMGVQAIKEFAFPLLIGVISGTYSSIFIATALWFDWELTTR 299

Query: 829 KNA 831
           K  
Sbjct: 300 KKK 302


>gi|217972749|ref|YP_002357500.1| preprotein translocase subunit SecD [Shewanella baltica OS223]
 gi|217497884|gb|ACK46077.1| protein-export membrane protein SecD [Shewanella baltica OS223]
          Length = 616

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 161/507 (31%), Positives = 273/507 (53%), Gaps = 32/507 (6%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
           + + LGLDLRGG H ++EVD  + +    +    + RS L++E I    +R     I + 
Sbjct: 119 SPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKIRYAGIRTNTTGIEIK 178

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
           F D+    +    +    +        D          +  +  V+S   + Q+   A++
Sbjct: 179 FRDAESLASAERFLKSRSK--------DMVFTDASRGEDFALQAVMSDVYLKQIKEEALQ 230

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
           Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++LG TA + FH V    
Sbjct: 231 QNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASIEFHMVDDKA 290

Query: 222 SKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
                       G    +  +G   +++ +V ++G H+ GA  +FD  + +P V I+ D 
Sbjct: 291 DPNAAQSGRLPAGSEVYQRREGGTVILKKEVMLTGDHITGAQPSFDQYS-RPQVSINLDA 349

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE---------- 326
            G   F +VT+DNIGKP+A +      +           +                    
Sbjct: 350 KGGTIFSDVTKDNIGKPMATLFIEYKDSGERNADGSVKMQKIQEVISVATIQARLGRNFV 409

Query: 327 -------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
                   A  LA +LRAG+L   ++IVEER +G  LG+++I  G  A+V G+ +++LFM
Sbjct: 410 ITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFM 469

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           +V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL +G+AVD N+L+ ERI
Sbjct: 470 LVYYRGFGLIANIALTANLVMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERI 529

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
           REE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G GAV+GFA+T+ + I  
Sbjct: 530 REELRAGRSVQQAIHEGYGNAFSTIADANITTFLTALILFAVGTGAVKGFAVTLMIGIAT 589

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SMFTAI   R+++  I   K++K++ I
Sbjct: 590 SMFTAIVGTRSIVNAIWGGKRVKTLSI 616



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 94/241 (39%), Gaps = 6/241 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  R+   S+++  I            +   +              +  +   ++   +
Sbjct: 376 DSGERNADGSVKMQKIQEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     +GP +  E I+ G+  ++     +L+++ + ++  F L A   L  ++   +G 
Sbjct: 436 IVEERTIGPSLGAENIQNGVQAMVWGMAVVLLFMLVYYR-GFGLIANIALTANLVMVVGV 494

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +      
Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAF 551

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828
                 ++  F++ L +   G   +  FA+ +  GI  +  ++I     I+       R 
Sbjct: 552 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRV 611

Query: 829 K 829
           K
Sbjct: 612 K 612


>gi|261868466|ref|YP_003256388.1| preprotein translocase subunit SecF [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413798|gb|ACX83169.1| protein-export membrane protein SecF [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 321

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 166/307 (54%), Gaps = 6/307 (1%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           +   +      +      ++FM+ R WG   S++    S+  +FT   N+G+DF GG+ +
Sbjct: 5   NRSQSIREIQGIKLPFRLVEFMKYRMWGYLASVIIIAVSLFFVFTKSFNWGLDFTGGVVV 64

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               ++P DL  +RS L    I     Q   G ++ ++RL           ++ + VK+ 
Sbjct: 65  DTHFSQPADLEKIRSTLVQNGIESPLVQTTGGVRDVMIRLPATD-----NAQIGDNVKRM 119

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           ++ +     I++TE VGP +  EL +  I   + + I +L+Y+ IRF+W  A+G + +L 
Sbjct: 120 LSTLDSDIQIRSTEFVGPNVGEELTQGAIYATLTTLIMLLLYVGIRFEWRLAVGGVLSLA 179

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            D+  TLG F+   IE +LT +AA+L+++GYS+ND +VV+DR+R+N +      S  D+I
Sbjct: 180 HDVIVTLGAFSYLQIEMDLTFIAAILSVVGYSLNDSIVVFDRVRENFRKIRRIASI-DII 238

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + S+ +TL R++ TS+   I V+ + V+GG  I SF++ +  GI     SSIF+A  I  
Sbjct: 239 NISLTQTLSRTIMTSVTTLIVVIALFVFGGPTIHSFSLALLIGIGFGTYSSIFVAIAIAY 298

Query: 822 FIYDWRA 828
            +   R 
Sbjct: 299 DLGLDRE 305


>gi|187930028|ref|YP_001900515.1| preprotein translocase subunit SecF [Ralstonia pickettii 12J]
 gi|187726918|gb|ACD28083.1| protein-export membrane protein SecF [Ralstonia pickettii 12J]
          Length = 323

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 162/305 (53%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S L  I ++  LF  GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIRRDIPFMKHALILNALSFLTFIAAVFFLFHKGLHLSVEFTGGTVMEVAYTQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  +R ++E L   D   QNF   ++ ++RL  + G      A     + V   +  + P
Sbjct: 61  LPKIRGDVEKLGYADAQVQNFGTSRDVMIRLPLKTGPDGKPIASAVQSQQVMTALNAVNP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + +Q  E VGP++ +EL   G++ ++   + ++IY+ IRF+W FA+  +   + D+   
Sbjct: 121 DAKLQRVEFVGPQVGKELATDGLLALLFVVVGIVIYLSIRFEWKFAVAGVIANLHDVVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +A VL ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + V+ M V+GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTIITHGSTEMMVVSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|227884584|ref|ZP_04002389.1| preprotein translocase subunit SecD [Escherichia coli 83972]
 gi|300988040|ref|ZP_07178520.1| protein-export membrane protein SecD [Escherichia coli MS 45-1]
 gi|300997405|ref|ZP_07181745.1| protein-export membrane protein SecD [Escherichia coli MS 200-1]
 gi|301049608|ref|ZP_07196559.1| protein-export membrane protein SecD [Escherichia coli MS 185-1]
 gi|306813126|ref|ZP_07447319.1| preprotein translocase subunit SecD [Escherichia coli NC101]
 gi|227838670|gb|EEJ49136.1| preprotein translocase subunit SecD [Escherichia coli 83972]
 gi|300298601|gb|EFJ54986.1| protein-export membrane protein SecD [Escherichia coli MS 185-1]
 gi|300304224|gb|EFJ58744.1| protein-export membrane protein SecD [Escherichia coli MS 200-1]
 gi|300407592|gb|EFJ91130.1| protein-export membrane protein SecD [Escherichia coli MS 45-1]
 gi|305853889|gb|EFM54328.1| preprotein translocase subunit SecD [Escherichia coli NC101]
 gi|307628123|gb|ADN72427.1| preprotein translocase subunit SecD [Escherichia coli UM146]
 gi|312944985|gb|ADR25812.1| preprotein translocase subunit SecD [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315289877|gb|EFU49267.1| protein-export membrane protein SecD [Escherichia coli MS 110-3]
 gi|315294213|gb|EFU53564.1| protein-export membrane protein SecD [Escherichia coli MS 153-1]
 gi|315299574|gb|EFU58822.1| protein-export membrane protein SecD [Escherichia coli MS 16-3]
 gi|320197156|gb|EFW71773.1| Protein-export membrane protein SecD [Escherichia coli WV_060327]
 gi|323191326|gb|EFZ76589.1| protein-export membrane protein SecD [Escherichia coli RN587/1]
 gi|324010085|gb|EGB79304.1| protein-export membrane protein SecD [Escherichia coli MS 57-2]
 gi|324010668|gb|EGB79887.1| protein-export membrane protein SecD [Escherichia coli MS 60-1]
 gi|330910202|gb|EGH38712.1| protein-export membrane protein SecD [Escherichia coli AA86]
          Length = 604

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 292/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++ +      N    ++ L       G +         +  +   
Sbjct: 358 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+
Sbjct: 477 ILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +
Sbjct: 534 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 594 YGGKRVKK 601


>gi|54297927|ref|YP_124296.1| preprotein translocase subunit SecD [Legionella pneumophila str.
           Paris]
 gi|148359572|ref|YP_001250779.1| protein export protein SecD [Legionella pneumophila str. Corby]
 gi|296107614|ref|YP_003619315.1| protein export protein [Legionella pneumophila 2300/99 Alcoy]
 gi|53751712|emb|CAH13134.1| hypothetical protein lpp1982 [Legionella pneumophila str. Paris]
 gi|148281345|gb|ABQ55433.1| protein export protein SecD [Legionella pneumophila str. Corby]
 gi|295649516|gb|ADG25363.1| protein export protein [Legionella pneumophila 2300/99 Alcoy]
          Length = 618

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 175/525 (33%), Positives = 280/525 (53%), Gaps = 38/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     + +  GLDLRGG H +LEVD +  ++   +     +   L++ GI
Sbjct: 103 NLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREAGI 162

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +R + +K I L F DS   EN   ++   +  V            + T T+  I  
Sbjct: 163 RYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDV----------VFVKTKTQNSILG 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +S   ++ +  + IEQ+M I+R R++++G+ E+ +Q+ G+ R+ + LPG QD +R +Q+
Sbjct: 213 AISPAELNSIRQNTIEQTMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + FH V   N             +      DG+  L++ +V +SG  +  A ++
Sbjct: 273 LGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVVLSGDSITSAVSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGR 301
           FD +T  P V I     G   F +VTR+NIGK +                    V     
Sbjct: 333 FDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEE 392

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            + +  + Q       QI+G    + A  LA +LRAG+LP  +  VEER VG  LG ++I
Sbjct: 393 RVISAPVIQNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENI 452

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G  ++  G+ LI++ M+V Y  +GL+AD ++ LN++   ALLS++ ATLTLP IAGIV
Sbjct: 453 RRGLISLEVGMGLILVLMLVYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R   S   ++  G+ RA+STI D+N+T LI  ++LF  G
Sbjct: 513 LTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            G VRGFA+ + L +L SM T I+  RA++ +    + +K + I 
Sbjct: 573 TGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIG 617



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 97/255 (38%), Gaps = 4/255 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G     V          +    + +   +    +    +N L       G + ++     
Sbjct: 363 GKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVIQNALGSNFQITGLTDSKEASNL 422

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +   +           VGP + +E IR+G++ + +    +L+ + + + + F L A
Sbjct: 423 ALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILVLMLVYYHF-FGLIA 481

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L+L++       ++      L  +A ++  +G +V+  V++Y+R+R+ ++     +S
Sbjct: 482 DIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELR---NGLS 538

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +  I           +  ++   I  + +   G   +  FA+ ++ G++ +  + I   
Sbjct: 539 PQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYT 598

Query: 817 APILLFIYDWRAKNA 831
             I+ + Y  R    
Sbjct: 599 RAIVNWYYGGRNVKK 613



 Score = 43.1 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 27/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++  +I  IG + A+PN   ++ +                           V 
Sbjct: 4   KYPLWKNLMLIVIAVIGFIYAIPNLYTENPV---------------------------VQ 36

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                +   +   +++ S LK   +   S+   ++ + + F+ +  +    D +   L
Sbjct: 37  ISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSSTDSQLLARDVIKNSL 94


>gi|197116902|ref|YP_002137329.1| preprotein translocase subunit SecF [Geobacter bemidjiensis Bem]
 gi|197086262|gb|ACH37533.1| protein export membrane protein SecF [Geobacter bemidjiensis Bem]
          Length = 313

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 145/299 (48%), Gaps = 8/299 (2%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFT---HGLNYGIDFKGGIQLGVLANRP 588
             +     I F+  R     IS + +I  +  +     +  N GIDF GG  + +    P
Sbjct: 1   MQLISNTNIDFIGKRKVSFVISTIIAIIGLIGILQIARNSANMGIDFSGGTSVQLSFTHP 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +     R  L      +++ Q   G      R+  + G S A          K       
Sbjct: 61  IPQEKARELLSDHLFREVNLQEIKGGN----RILVKVGKSGADVSETITAVFKKEFPGNA 116

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             ++++  VGP I  +L    +  V +S I +++YI  RF + F +GAI   + D+   +
Sbjct: 117 FVVESSTDVGPSIGNKLKTDTLKAVGLSMIGIILYIAWRFDFKFGVGAIAATLHDVLAMV 176

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F L   E NL  + AVLT+ GYS+ D VVV+DR+R+N+  Y    +   L ++SINE 
Sbjct: 177 ALFYLMNKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKYV-DDTKEGLFNRSINEV 235

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           L R+V TS+  F++ + + ++GG VI  FA+ +  GIV+A  SSIFIA+PI+  +   R
Sbjct: 236 LPRTVITSLTTFLAAISLFLFGGEVIHDFALALVAGIVIATYSSIFIASPIVAVLEARR 294


>gi|312623050|ref|YP_004024663.1| protein-export membrane protein secf [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203517|gb|ADQ46844.1| protein-export membrane protein SecF [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 310

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 147/303 (48%), Gaps = 9/303 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R +   +SIL  +  +   F  G NY IDF GG  L +  ++      +  
Sbjct: 1   MTKIDFMGKRKYFYIVSILVMVIGLISYFVQGFNYDIDFTGGTVLEINLHKVPTAQEISE 60

Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--- 651
              L     G  +      E    + +         +T + +  + K+   +        
Sbjct: 61  LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKTKTELSKETRDKLFAEIAKRYNLKK 120

Query: 652 ---QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + VG  IS EL  + I  V+I++I MLIYI IRF++ F   A+  LI D+   L
Sbjct: 121 EDLISYQNVGATISSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             + LF I  N T +AA+LT++GYS+ND +VV+DR+R+N ++    +  +DL++ S+N+T
Sbjct: 181 TVYTLFKIPLNSTFIAAILTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +GRS+ T+M+  I ++ + + G   I  FA P+  G++    SSIFIA  +         
Sbjct: 240 IGRSIATAMSVIIVLVVLYIMGVQSIKEFAFPLLIGVISGTYSSIFIATALWFDWELSTR 299

Query: 829 KNA 831
           K  
Sbjct: 300 KKK 302


>gi|312795157|ref|YP_004028079.1| protein translocase subunit secD [Burkholderia rhizoxinica HKI 454]
 gi|312166932|emb|CBW73935.1| Protein translocase subunit secD [Burkholderia rhizoxinica HKI 454]
          Length = 685

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 161/516 (31%), Positives = 265/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L  A P +L                + LGLDLRGG H +L+VD    +N  L   
Sbjct: 109 IVALNLQSASPRWLASLHA---------LPMYLGLDLRGGVHFLLQVDLAGALNKKLDAD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ + I    + ++   + ++F D          ++  +  +  ++       
Sbjct: 160 AADARTLLRDKSIRAGGVNRVGQTVVVNFVDQDVANRARQLLSDNVTELTWQVQPAAGGY 219

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +V           +      V   A++Q++  +  R++++G++E  +Q+ G+ RI+++L
Sbjct: 220 QVVGA--------FTPAAQKTVQDSALKQNITTLHNRVNELGVAEPIVQQQGADRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSK----KGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +        N           G       +G    ++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARMADYQNPVRNINDPVPVGDDLFTQGNGAPVYLKKQVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT---AP 306
           +G  +  A+A FD    +P V I  D  G R   +V+RDNIGKP+A+VL  +        
Sbjct: 332 TGDRITDASAGFDEHQ-RPAVKIRLDARGGRVLRDVSRDNIGKPMAIVLFEKNKGELLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+      QI+G  T + A  LA +LRAGSL   + I+EER +G  LG+D+I KG  
Sbjct: 391 ATIQSELGENFQITGQPTPQAATDLALLLRAGSLAAPMEIIEERTIGPSLGADNIRKGFD 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           ++  G   I +FMI  Y  +GL++  ++ +N++L +A+LS++ ATLTLP IA I L +G+
Sbjct: 451 SVQYGFAAIAVFMIAYYMLFGLISVIALSVNLLLLVAVLSMMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+D+N+L+NERIREE R+      ++  GFS A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDANVLINERIREELRRGAPAQLAIQNGFSHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           GFA+   + IL SMF+A+   R ++      KK   
Sbjct: 571 GFAVVHCIGILTSMFSAVFFARGLVNLWYGGKKKLK 606



 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 85/209 (40%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IRKG   V     A+ +++
Sbjct: 404 TGQPTPQAATDLALLLRAGSLAAPMEIIEERTIGPSLGADNIRKGFDSVQYGFAAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F L ++  L +++   +   ++      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGLISVIALSVNLLLLVAVLSMMQATLTLPGIAAIALALGMAIDANVLINERI 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I    +      + +++   I+ L +  +G   +  FA+    G
Sbjct: 523 REELR---RGAPAQLAIQNGFSHAWATILDSNVTTLIAGLALLAFGSGPVRGFAVVHCIG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F A  ++   Y  + K   +
Sbjct: 580 ILTSMFSAVFFARGLVNLWYGGKKKLKSL 608



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 34/124 (27%), Gaps = 29/124 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IGLL  LPNF  ++                           ++V 
Sbjct: 3   RYPLWKYVVMLVALAIGLLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMR----QIQNKITLSFADSRFKENIADKVTL 117
                        + + S L   G+    +          I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDSSVLNTVESTLAANGVQADDVTFDNASQNANIRVRLKDTDTQLRVKDLLQK 97

Query: 118 FLQG 121
            L  
Sbjct: 98  ALNA 101


>gi|253999940|ref|YP_003052003.1| preprotein translocase subunit SecF [Methylovorus sp. SIP3-4]
 gi|253986619|gb|ACT51476.1| protein-export membrane protein SecF [Methylovorus sp. SIP3-4]
          Length = 312

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 94/289 (32%), Positives = 165/289 (57%), Gaps = 3/289 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM        IS++  + S+  L   GLN G+DF GG  + V   +  D+  +R  ++
Sbjct: 10  IPFMSYGRLTTAISLITFLLSVFFLAHRGLNLGVDFTGGTMMEVSYPQAADIGKIREAVD 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           S+ + D + QNF   ++ L+RL  +P   ++ + + E V   + +  P   +   E VG 
Sbjct: 70  SVGLKDATVQNFGTSRDVLIRLPLKP--ELSISALSEQVLTALQKADPNVKMNRVESVGA 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++ +EL   G + +++ +I ++ Y+ +RF+W FA+ A+   + D+   LGFFA F  EFN
Sbjct: 128 QVGQELYENGALALLLVSIGIMAYLALRFEWRFAVAAVVANMHDVVIILGFFAFFQWEFN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AAVL ++GYSVN+ VVV+DR+R+N +      S  ++I+ +I  T+ R+V T  + 
Sbjct: 188 LTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRK-ASVPEVINNAITRTMSRTVITHFST 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + VL M  +GG V+ +F++ +  GI+    SS+ +A+PI +++   R 
Sbjct: 247 QLMVLSMLFFGGEVLHNFSLALTIGILFGIYSSVLVASPIAMYLGVSRE 295


>gi|146310538|ref|YP_001175612.1| preprotein translocase subunit SecD [Enterobacter sp. 638]
 gi|145317414|gb|ABP59561.1| protein-export membrane protein SecD [Enterobacter sp. 638]
          Length = 615

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 288/524 (54%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLASINAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNMDGLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D+  ++   D ++   +             ++      ++  
Sbjct: 164 PYTTVRKEDNYGMSITFRDAAARDQAVDYLSTRHR-----------DLVISRQGSNQLRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++
Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G            +G   ++  +V ++G H+  +T+ 
Sbjct: 273 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKETREGQPVVLYKRVILTGDHITDSTS- 331

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
              + ++P V+IS D  G       T+DNIGKP+A +      +                
Sbjct: 332 NQDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKEEE 391

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIT 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL + +LFM+  Y K+GL+A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 452 QGLEACLAGLAVSILFMLFFYKKFGLIATTALIANLVLIIGIMSLLPGATLTMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    +SV  ++D G+  A+S+IFD+N+T LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYKGAFSSIFDANVTTLIKVLILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 75/177 (42%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++   +K  F L A T LI ++   +G  +L  
Sbjct: 440 TIGPTLGMQNITQGLEACLAGLAVSILFMLFFYK-KFGLIATTALIANLVLIIGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  ID+           
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYKGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I VL +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 556 ANVTTLIKVLILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612


>gi|212709163|ref|ZP_03317291.1| hypothetical protein PROVALCAL_00196 [Providencia alcalifaciens DSM
           30120]
 gi|212688075|gb|EEB47603.1| hypothetical protein PROVALCAL_00196 [Providencia alcalifaciens DSM
           30120]
          Length = 336

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 93/319 (29%), Positives = 170/319 (53%), Gaps = 2/319 (0%)

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           M+  +I  +  + +     +   L        FMR       ISI+  I S  ++   G 
Sbjct: 1   MVNVLISCQFKEHVVAQDYTVEQLNYGRKVYDFMRWDNVAFSISIILLIASCVIIGVKGF 60

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N+G+DF GG  + +  ++P DL  +R +L +    D   QNF   ++ ++RL    G   
Sbjct: 61  NWGLDFTGGTVIEINLSQPADLDKIRDSLSNSNHKDPLIQNFGSSRDIMIRLPPVEG-VA 119

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            Q    E++      +   +T++  E VGP +  EL + G + ++ + I +LIY+  RF+
Sbjct: 120 GQEVGKEIITIINKNVDEQATVKRIEFVGPSVGAELAQTGALALLTALICILIYVGFRFE 179

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  A GA+  L  D+  TLG  +LF IE ++T VA+++++IGYS+ND +VV DR+R+N +
Sbjct: 180 WRLAAGAVLALAHDVVITLGILSLFHIEIDMTIVASLMSVIGYSLNDSIVVSDRIRENFR 239

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                  + ++++ S+ +TL R++ TS    + VL + ++GG+++  F++ M  G+ +  
Sbjct: 240 KIRRGTPY-EIMNVSLTQTLSRTIMTSATTLLVVLMLYLFGGAMLEGFSLVMLIGVTIGT 298

Query: 810 SSSIFIAAPILLFIYDWRA 828
            SSI++A+ + L +   R 
Sbjct: 299 ISSIYVASALALKMGMKRE 317


>gi|126725449|ref|ZP_01741291.1| protein-export membrane protein SecD [Rhodobacterales bacterium
           HTCC2150]
 gi|126704653|gb|EBA03744.1| protein-export membrane protein SecD [Rhodobacterales bacterium
           HTCC2150]
          Length = 554

 Score =  212 bits (538), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 188/498 (37%), Positives = 282/498 (56%), Gaps = 9/498 (1%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             +P  +P   ++LGLDLRGG+HL+ EV  ++     +  Y  E+R  L+ E   V ++R
Sbjct: 57  AGWPGYLPSALVNLGLDLRGGAHLLGEVVVEEVYAARMDAYWPEVRDALRAERDVVGTVR 116

Query: 93  QI---QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
           +    ++++ +  +     E     +    Q V +   V      +      EI+I LS+
Sbjct: 117 RQPSPEDQLRVRISKPEAIEAAVAALEALAQPVVTLTGVGTNDIEVS-AEGAEITIQLSE 175

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
                  +  ++QS+EIIR+R+D++G  E TIQR G  RILIQ+PG      L+ L+GTT
Sbjct: 176 AEKLATDNRTVQQSLEIIRRRVDEVGTREPTIQRQGERRILIQVPGIGSAGELKALIGTT 235

Query: 210 AKMSFHKVLPNNSKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           AK++FH V+          G R         +G  Y++E    ++G  L  A  +FD   
Sbjct: 236 AKLTFHPVVSRTGDGEQPPGARNVIYPDVAEEGLFYVLEKTPVVTGDDLVDAQPSFDQNG 295

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +P V   F+  G R+F   T +NIG P A+VLD  V++APVI   I  G   I+GNF +
Sbjct: 296 -RPAVSFRFNASGGRKFGNYTAENIGSPFAIVLDSEVISAPVIQSHIAGGSGIITGNFDV 354

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
             +  LA +LRAG+LP K+N +EER +G +LG DSI  G  A +     +++FM + YG 
Sbjct: 355 AESTNLAVLLRAGALPAKINFLEERTIGPELGQDSIDAGKIASIVAFAAVLVFMFLSYGM 414

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
           +GL A+ ++ +NV L   LLS +GATLTLP IAGIVL IG+AVD+N+L+ ERIREE +  
Sbjct: 415 FGLFANVALIINVALIFGLLSAIGATLTLPGIAGIVLTIGMAVDANVLIFERIREELKTA 474

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +    ++++G+ +A S I D+NIT  +  V+LF  G G VRGFA+T+ L I  S+FTAI 
Sbjct: 475 KGPARAIELGYEKALSAIVDANITTFMTAVILFVMGSGPVRGFAVTLALGIATSVFTAIF 534

Query: 506 IVRAMMIFIIRYKKMKSI 523
           + R ++      K+ K I
Sbjct: 535 VTRLLIAMWFERKRPKKI 552



 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 94/209 (44%), Gaps = 4/209 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G+          V  +   +           +GP++ ++ I  G +  I++  A+L+
Sbjct: 347 IITGNFDVAESTNLAVLLRAGALPAKINFLEERTIGPELGQDSIDAGKIASIVAFAAVLV 406

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++++ +   F L A   LI+++    G  +  G    L  +A ++  IG +V+  V++++
Sbjct: 407 FMFLSYGM-FGLFANVALIINVALIFGLLSAIGATLTLPGIAGIVLTIGMAVDANVLIFE 465

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   T+      I+    + L   V  ++  F++ + + V G   +  FA+ +A
Sbjct: 466 RIREELK---TAKGPARAIELGYEKALSAIVDANITTFMTAVILFVMGSGPVRGFAVTLA 522

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            GI  +  ++IF+   ++   ++ +    
Sbjct: 523 LGIATSVFTAIFVTRLLIAMWFERKRPKK 551


>gi|332768514|gb|EGJ98697.1| protein-export membrane protein SecF [Shigella flexneri 2930-71]
          Length = 304

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 161/286 (56%), Gaps = 1/286 (0%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           MR  +W  GIS L  I +I ++   G N+G+DF GG  + +   +P ++ V+R  L+   
Sbjct: 1   MRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAG 60

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             +   QNF    + +VR+    G++  Q    +++K         + ++  E VGP + 
Sbjct: 61  FEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVG 120

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  TLG  +LF IE +LT 
Sbjct: 121 ADLAQTGAMALMAALLSILVYVGFRFEWRLAAGVVIALTHDVIITLGILSLFHIEIDLTI 180

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +TL R++ TS    + 
Sbjct: 181 VASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSGTTLMV 239

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R 
Sbjct: 240 ILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 285


>gi|332531795|ref|ZP_08407680.1| protein-export membrane protein SecD [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038771|gb|EGI75213.1| protein-export membrane protein SecD [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 619

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 160/519 (30%), Positives = 266/519 (51%), Gaps = 35/519 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             +  A+  N + LGLDL GG H  +E+D    V+  L+    + RS L++E +   S+R
Sbjct: 110 PAWLKAVGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEQDFRSDLREEKLRYRSVR 169

Query: 93  Q--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
           +    +++ +       K      +                  +  ++ +K     +S+ 
Sbjct: 170 RVAGSDRMRVEMRTEEDKNAAESFLETRYPL---------NVYIDDSSNDKAFFATMSEQ 220

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
            + ++  +AI+Q+  IIR RI+QIG++E  +QR G+ RI++QLPG QD +R +++LG TA
Sbjct: 221 KLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPGIQDTARAKEILGATA 280

Query: 211 KMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
            + F +V  N             G   +   DG   +++ ++ + G H+ GA +  D   
Sbjct: 281 TLEFREVDENADISAAAQGRIPAGTEMIMSRDGYPVVLKKRIILEGSHITGAQSGADEYQ 340

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------LTAPV 307
              V      + GA+      R    +   V ++ +                   +    
Sbjct: 341 RPQVSITLDSKGGAKMNAFTKRAIGKRMATVFIEYKPSGKKDADGKALPPIKVEEVINVA 400

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             QA      +I+G      A  L+ +LRAG+L   + IVEER VG  LG ++I  G  A
Sbjct: 401 TIQARLDRSFRITGIDNPAEAHNLSLLLRAGALVAPIQIVEERTVGPSLGQENIEAGMTA 460

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGL 426
           +  G   +++FM+V Y  +G+VA+ ++  N++L + ++SL+  ATLTLP IAGIVL +G+
Sbjct: 461 VALGFAFVLVFMLVYYKGFGMVANLALAANLVLIVGVMSLIPGATLTLPGIAGIVLTVGM 520

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+N+L+ ERIREE    +S   ++  G+  A+STIFD+NIT LIA ++LF  G G + 
Sbjct: 521 AVDANVLIFERIREELADGRSPQQAIHFGYDSAFSTIFDANITTLIAAIILFAVGTGPIA 580

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GFA+T+ + IL SMFTAI   RA++   +  K++  + I
Sbjct: 581 GFAVTLAIGILTSMFTAIVGTRAVINLFVGGKRIDKLSI 619



 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 76/172 (44%), Gaps = 5/172 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP + +E I  G+  V +    +L+++ + +K  F + A   L  ++   +G  +L  G 
Sbjct: 446 GPSLGQENIEAGMTAVALGFAFVLVFMLVYYK-GFGMVANLALAANLVLIVGVMSLIPGA 504

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              L  +A ++  +G +V+  V++++R+R+ +       S +  I    +         +
Sbjct: 505 TLTLPGIAGIVLTVGMAVDANVLIFERIREELAD---GRSPQQAIHFGYDSAFSTIFDAN 561

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   I+ + +   G   I  FA+ +A GI+ +  ++I     ++      + 
Sbjct: 562 ITTLIAAIILFAVGTGPIAGFAVTLAIGILTSMFTAIVGTRAVINLFVGGKR 613



 Score = 45.1 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 84/288 (29%), Gaps = 38/288 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  IGLL A PN   +                            ++V 
Sbjct: 4   KFPVWKYLLVLAVVAIGLLYASPNLYGRDPA-------------------------IQVS 38

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
                +  L    D++ + LK   +   S      +I +   +   +    D +   L  
Sbjct: 39  GAKGADVDL-SVVDKVNAILKTNNVTAKSTILEDGQILVRLKNVEEQLKAHDLLRDSLSD 97

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI----------DQVISHAIEQSMEIIR-Q 169
              S +N+ P +   +         +    +              + + +EQ  +  R  
Sbjct: 98  DYISAINMAPAQPAWLKAVGGNPMKLGLDLSGGVHFTMEIDMATAVDNQLEQMEQDFRSD 157

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
             ++     S  +  GS R+ +++  E+D +     L T   ++ +    +N K  F   
Sbjct: 158 LREEKLRYRSVRRVAGSDRMRVEMRTEEDKNAAESFLETRYPLNVYIDDSSNDKAFFATM 217

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                    +  + +++  I         A  + +       I     
Sbjct: 218 SEQKLKEIRDYAIKQNETIIRNRINQIGVAEPNVQRQGAERIIVQLPG 265


>gi|332160721|ref|YP_004297298.1| preprotein translocase subunit SecD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664951|gb|ADZ41595.1| preprotein translocase subunit SecD [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 495

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 160/507 (31%), Positives = 280/507 (55%), Gaps = 37/507 (7%)

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSF 102
           + LGLDLRGG H ++EVD D  +    +   D LRS L+++ I   ++R++ N  + + F
Sbjct: 1   MKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRSDLREKNIPYATVRKLDNYGVEVRF 60

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
            D + +++             S L+   +  ++ +     +  V+S   + +   +A++Q
Sbjct: 61  RDDKTRDDAI-----------SYLSPRHRDLVIGSNGSNTLKAVMSDERLREAREYAVQQ 109

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
           ++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++LG TA + F  V  N  
Sbjct: 110 NITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNSNVD 169

Query: 223 KKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                 G            +G   ++  +V ++G H+  +T++ D    +  V+IS D  
Sbjct: 170 ASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSSTDEYN-QAQVNISLDSA 228

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VINQAIPSGKAQI 319
           G       T+DNIGKP+A +      +                       Q+      +I
Sbjct: 229 GGSAMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINVATIQSRLGNSFRI 288

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +G      A  L+ +LRAG+L   + IVEER +G  LGS +I +G  A + GL + +LFM
Sbjct: 289 TGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNITQGLEACLWGLAVSILFM 348

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           +V Y K+G++A  ++  N++L + ++SLL  ATLT+P IAGIVL + +AVD+N+L+NERI
Sbjct: 349 VVYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERI 408

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
           +EE +  +++  ++  G+  A+S+I D+N+T LI  ++L+  G G+++GFAIT  + ++ 
Sbjct: 409 KEEYKNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVGTGSIKGFAITTAIGVVT 468

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SMFTAI   RA++  +   K++  + I
Sbjct: 469 SMFTAIVGTRAIVNLLYGGKRINKLSI 495



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 320 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 378

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 379 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YKNGRTIQQAIHEGYKGAFSSIVD 435

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 436 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 492


>gi|159044407|ref|YP_001533201.1| preprotein translocase subunit SecF [Dinoroseobacter shibae DFL 12]
 gi|157912167|gb|ABV93600.1| protein-export membrane protein [Dinoroseobacter shibae DFL 12]
          Length = 320

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 173/308 (56%), Gaps = 7/308 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P      F +     +G S +  + S+ L  + GLN+GIDF GG  +   + + 
Sbjct: 1   MRLKLVPSETNWDFFKYVRLTLGASAVAMVASLVLWLSVGLNFGIDFLGGTTIRTESAQV 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGE------KNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD++  R+ +E L +GDIS                ++R+Q Q G        +  +++ +
Sbjct: 61  VDVAAYRAAVEPLGLGDISITEVFDPTFGPERNVAMLRIQAQEGQESVPPETILAIEEAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             + P  T  + E VGPK+S ELI   ++ V  S +A+L YIW+RF+W F++GAI  L+ 
Sbjct: 121 RTVDPEMTFPSVESVGPKVSGELILTAMLAVGASMVAILFYIWLRFEWQFSIGAIAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+L  I F+L  +AA+LT+IGYS+ND VV++DR+R+N+  Y      RD+++
Sbjct: 181 DVVLTIGIFSLLQIRFDLATIAALLTIIGYSINDTVVIFDRLRENLIKYKKK-PLRDVMN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            S+NETL R+V TS    +++L +   GG VI  F   + +GI+V   SS+F+A  I+L 
Sbjct: 240 LSVNETLSRTVMTSGTTLLALLALLALGGDVIRGFVFAIFWGIIVGTYSSVFVAKNIVLL 299

Query: 823 IYDWRAKN 830
           +   R   
Sbjct: 300 LGVNREPK 307


>gi|91225155|ref|ZP_01260377.1| protein export protein SecD [Vibrio alginolyticus 12G01]
 gi|91190098|gb|EAS76369.1| protein export protein SecD [Vibrio alginolyticus 12G01]
          Length = 618

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 156/528 (29%), Positives = 275/528 (52%), Gaps = 45/528 (8%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +   +    +  RS L+   I
Sbjct: 104 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE---- 142
              ++R               KE +   +    Q   +K  ++     ++          
Sbjct: 164 RYRAIRPSG------------KEAVEVLLRNEEQLAEAKATLEKNHPDMIFVDSDSNGRY 211

Query: 143 -ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
            ++   ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R
Sbjct: 212 ALTATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAR 271

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
            +++LG TA + F +V                G     D DG   +++ +V + G  +  
Sbjct: 272 AKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD 331

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV-------------- 302
             ++   +  +P V+IS D  G  +    ++ NIGK +A V                   
Sbjct: 332 -ASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILD 390

Query: 303 ----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G 
Sbjct: 391 KHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQ 450

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
            +I  G  A + G+V ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP I
Sbjct: 451 QNIDMGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGI 510

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGIVL +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++L
Sbjct: 511 AGIVLTVGMAVDANVLIFERIREEIRDGRSPQQAIHQGYANAFSTIADANITTLITAIIL 570

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           F  G GAV+GFA+T+ + IL SMFTAI   R ++  I   K++  + I
Sbjct: 571 FAVGTGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLIYGGKRVDKLSI 618



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 466

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 467 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   +  FA
Sbjct: 526 LIFERIREEIRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 582

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     I+  IY  + 
Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLIYGGKR 612



 Score = 41.2 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++         L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVLFAIITAALYALPNIYGEDPAIQVTGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D + + L KE +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTTALNKEQLSHKSIALEDGSILVRFNDTDTQISARDVISEAL 95


>gi|296161042|ref|ZP_06843853.1| protein-export membrane protein SecF [Burkholderia sp. Ch1-1]
 gi|295888741|gb|EFG68548.1| protein-export membrane protein SecF [Burkholderia sp. Ch1-1]
          Length = 316

 Score =  212 bits (538), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 153/302 (50%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS+L  + ++  L   GL+  ++F GG  + V       
Sbjct: 1   MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLLHRGLHLSVEFTGGTVIEVQYPGTAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  L  L   D   QNF   ++ L+RL  + G + AQ    + V   +    P   
Sbjct: 61  LEPVRGTLGKLGYADAQVQNFGTSRDVLIRLPLKKGYTSAQQS--DQVMTALKADTPQVQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +      ++IY+  RF+W +A+  +   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVAGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKLTVIEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T     + VL M ++GG  +  FA+ +  GI+    SS+F+AA + ++    R   
Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|192359607|ref|YP_001981945.1| protein-export membrane protein SecD [Cellvibrio japonicus Ueda107]
 gi|190685772|gb|ACE83450.1| protein-export membrane protein SecD [Cellvibrio japonicus Ueda107]
          Length = 625

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 152/521 (29%), Positives = 276/521 (52%), Gaps = 35/521 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
           S    +  A+    + LGLDL GG H +LEVD    V    ++ +DE++  L+KE I   
Sbjct: 108 STTPGWLQALGAEPMKLGLDLAGGVHFLLEVDTASAVAKRQEISADEMKDKLRKEKIRYA 167

Query: 90  SMRQI-QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
           S+     N+I   F  +  ++   + +                  +    +       LS
Sbjct: 168 SVDTDRDNRIVGRFRSADTRDQAINSLR-------RDHPNQLFTRVDNGESNFSFVASLS 220

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
           +  +  + S A+ Q++  +R R++++G+SE  +Q  G  RI++QLPG QDP+  ++++G 
Sbjct: 221 ETAVRTIESEAVSQNLITLRNRVNELGVSEPIVQSQGRSRIIVQLPGIQDPAEAKRVIGK 280

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRD---SDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           TA + F      ++         +  +         ++E ++ ++G H+  A ++FDP++
Sbjct: 281 TANLEFRLGASPDTPITNREEFPYKDEIMQMQRGNAVLERQIIVTGDHVANAQSSFDPES 340

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301
           ++P V+I+ D +G  +   +TR+N+G+ +                         +    +
Sbjct: 341 NQPQVNITLDGLGGEKMHRITRNNVGRQMGILFIEYKNRTEITRNAQGEEVHRNIQYVEK 400

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            + +    Q+    + +I+G      A  LA +LRAG+L   ++ VEER +G  LG+ +I
Sbjct: 401 KVISLATIQSALGVQFRITGLDKPGEASELALLLRAGALAAPMHFVEERTIGPSLGAQNI 460

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G  A + G++L+V+FM++ Y  +G+ A+ ++ +NV+L +A++S+ GATLTLP IAGIV
Sbjct: 461 RNGVDATIWGMILVVIFMLIAYRVFGVFANLALTMNVLLMIAVMSMFGATLTLPGIAGIV 520

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+AVD+N+L++ RIREE +   S   ++  G+ RA+ TI D+N+T LI  ++LF  G
Sbjct: 521 LSIGMAVDANVLIHSRIREELKGGASPQQAIYAGYERAWITILDANLTTLIVGIILFAIG 580

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            G V+GFA+T+ + I  SM+T+++  RA+   +   +K   
Sbjct: 581 TGPVKGFAVTLMIGIATSMYTSVTCSRALANLVYGSRKNLK 621



 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 96/271 (35%), Gaps = 5/271 (1%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +     N      G + +       +  +     +                    + +Q+
Sbjct: 357 MHRITRNNVGRQMGILFIEYKNRTEITRNAQGEEVHRNIQYVEKKVISLATIQSALGVQF 416

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE-IVGPKISRELIRKGIVGVIISAIAMLI 682
           +           E+        +        E  +GP +  + IR G+   I   I ++I
Sbjct: 417 RITGLDKPGEASELALLLRAGALAAPMHFVEERTIGPSLGAQNIRNGVDATIWGMILVVI 476

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ I ++  F + A   L +++   +   ++FG    L  +A ++  IG +V+  V+++ 
Sbjct: 477 FMLIAYRV-FGVFANLALTMNVLLMIAVMSMFGATLTLPGIAGIVLSIGMAVDANVLIHS 535

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K      S +  I           +  ++   I  + +   G   +  FA+ + 
Sbjct: 536 RIREELKG---GASPQQAIYAGYERAWITILDANLTTLIVGIILFAIGTGPVKGFAVTLM 592

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GI  +  +S+  +  +   +Y  R    +I
Sbjct: 593 IGIATSMYTSVTCSRALANLVYGSRKNLKKI 623


>gi|259909285|ref|YP_002649641.1| preprotein translocase subunit SecF [Erwinia pyrifoliae Ep1/96]
 gi|224964907|emb|CAX56430.1| Protein-export membrane protein [Erwinia pyrifoliae Ep1/96]
 gi|310766813|gb|ADP11763.1| preprotein translocase subunit SecF [Erwinia sp. Ejp617]
          Length = 322

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 164/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            S   +        FMR       IS +  I ++ ++   G N+G+DF GG  + +   +
Sbjct: 5   HSVEQMNHGRKVYDFMRWDKLAFIISGILLIVAVAIIGVRGFNWGLDFTGGTVIEINLEQ 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL ++R +L+     +   QNF   ++ +VR+    G+   +    +++         
Sbjct: 65  PADLDMMRGSLQKAGFAEPQVQNFGSSRDVMVRMAPAEGN-AGEALGSKVLGIVNEATGQ 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+L YI  RF+W  ALG +  L  D+  T
Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGGMALLSALIAILFYIGFRFEWRLALGTVLALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+NDK+VV DR+R+N +      S+ D+ + S+ +
Sbjct: 184 MGLLSLFQIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS+     VL + ++GG+++  F++ M  GI +   SSI++++ + L +   R
Sbjct: 243 TLSRTIITSVTTLAMVLILFIFGGALLQGFSLTMLIGITIGTISSIYVSSALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|212634516|ref|YP_002311041.1| preprotein translocase subunit SecF [Shewanella piezotolerans WP3]
 gi|212556000|gb|ACJ28454.1| SecD/SecF/SecDF export membrane protein:SecF protein [Shewanella
           piezotolerans WP3]
          Length = 315

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 170/299 (56%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++    +I F+R       +S +  + S+  L T G+N+G+DF GG  + +  + P 
Sbjct: 1   MFQILNIKGSINFLRHAVPISILSAILVLGSLGSLATKGINWGLDFTGGTVVELEFSSPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R  L + +      QNF   ++ L+RL  + G        +  V + +T++ P  
Sbjct: 61  NLVAIREGLSTEETDGAVVQNFGSSRDILIRLPVKEGVKSDTQ--VAHVMEGVTQLDPTV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +  E VGP++ +EL  +G + V+++ I +LIY+  RF+W  ALG++T L  D+  TLG
Sbjct: 119 IQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLALGSVTALAHDVIITLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++F +EF+LT +A +LT++GYS+ND +VV+DR+R+N        S  D+++ SI +T+
Sbjct: 179 VFSIFQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKLRKG-SPEDVVNTSITQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T+    + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296


>gi|309786996|ref|ZP_07681608.1| protein-export membrane protein SecF [Shigella dysenteriae 1617]
 gi|308924574|gb|EFP70069.1| protein-export membrane protein SecF [Shigella dysenteriae 1617]
          Length = 304

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 85/286 (29%), Positives = 161/286 (56%), Gaps = 1/286 (0%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           MR  +W  GIS L  I +I ++   G N+G+DF GG  + +   +P ++ V+R  L+   
Sbjct: 1   MRWDYWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEIDVMRDALQKAG 60

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             +   QNF    + +VR+    G++  Q    +++K         + ++  E VGP + 
Sbjct: 61  FEEPMLQNFGSSHDIMVRMPPAEGETGGQVLGSQVLKVINESTNQNAAVKRIEFVGPSVG 120

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            +L + G + ++ + +++L+Y+  RF+W  A G +  L  D+  TLG  +LF IE +LT 
Sbjct: 121 ADLAQTGAMALMTALLSILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTI 180

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +TL R++ TS    + 
Sbjct: 181 VASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSGTTLMV 239

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R 
Sbjct: 240 ILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 285


>gi|258544911|ref|ZP_05705145.1| protein-export membrane protein SecF [Cardiobacterium hominis ATCC
           15826]
 gi|258519831|gb|EEV88690.1| protein-export membrane protein SecF [Cardiobacterium hominis ATCC
           15826]
          Length = 306

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 162/291 (55%), Gaps = 4/291 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM     G+  S + +I ++ L+   G N+G++F GG  + +   +  D+  VRS 
Sbjct: 6   PYIPFMNYSRQGLWFSTVLTIAAVLLIIFRGFNFGLEFTGGATIEMQYAQAADIGHVRSV 65

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +E +       Q         V++++   +     + +  +   +    P + +     V
Sbjct: 66  VEKIVPDAGVVQYGSSRD---VQIRFAEQEGANIDQTMSDMVSALQADAPDAKLTGQSKV 122

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G +   EL+ KG++ + ++ I M+IY+ +RF+W FALGA+   + D+  T G F+L G  
Sbjct: 123 GGQYKEELVSKGLLAIGLACIGMIIYLGLRFEWKFALGAVLAQLHDVIITAGVFSLMGWT 182

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+L  +AA+L ++GYSVND VVVYDR+R+N +    +++ +D+ID SIN+TL R++ TS 
Sbjct: 183 FDLNVLAALLAILGYSVNDTVVVYDRIRENFRKLP-AVTPKDVIDTSINQTLARTMVTSF 241

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              +SV+ +A++GG+++  F+I M  GI+    SSIF+A+ I+  +     
Sbjct: 242 TTLLSVIALALFGGTILAGFSIAMIIGIIFGTYSSIFVASAIVYRMGVKHE 292


>gi|134280256|ref|ZP_01766967.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           305]
 gi|134248263|gb|EBA48346.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           305]
          Length = 675

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLSALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/356 (10%), Positives = 88/356 (24%), Gaps = 27/356 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +  S   K  + LG D        L   
Sbjct: 3   RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +  +            + +  + +   +       I +   D+  +  + D +   L  
Sbjct: 53  VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100

Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            +           L + + + +S      +    ++   +   ++  M     +      
Sbjct: 101 ADPNDPQYVVALNLQSASPRWLSALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           S++  Q          +               TA+ +   +  + S+  +          
Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               +    +  +    L         + ++  V     +        V    +      
Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                         A P        +       +     +A  L  K  I     +
Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336


>gi|126438812|ref|YP_001060341.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 668]
 gi|126218305|gb|ABN81811.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 668]
          Length = 675

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLSALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQSVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +  S   K  + LG D        L   
Sbjct: 3   RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +  +            + +  + +   +       I +   D+  +  + D +   L  
Sbjct: 53  VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLNA 101


>gi|5524706|gb|AAD44348.1| SecD protein [Enterobacter aerogenes]
          Length = 615

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 170/524 (32%), Positives = 288/524 (54%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+ +GI
Sbjct: 104 NLAPATPRWLAAMYAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSELRDKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  +++ F DS  ++              S L+   +  ++ +     +  
Sbjct: 164 PYSTVRKEDNYGLSIVFRDSAARDQAI-----------SYLSPRHRDLVISSQGTNALKA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++
Sbjct: 213 VMTDERLKEAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G            +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQSAAASGRVPGDSEVKDTREGRPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -MDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILAKEEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGISNPTEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SL+  ATLT+P IAGIV
Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALIANLVLIVGIMSLIPGATLTMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+N+T LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYKGAFSSIFDANVTTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ I  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 77/177 (43%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + LI ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALIANLVLIVGIMSLIP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYKGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    GI  +  ++I     I+  +Y  +    
Sbjct: 556 ANVTTLIKVIILYAVGTGAIKGFAITTGIGIATSMFTAIVGTRAIVNLLYGGKRVKK 612


>gi|295675562|ref|YP_003604086.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1002]
 gi|295435405|gb|ADG14575.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1002]
          Length = 695

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 162/516 (31%), Positives = 269/516 (52%), Gaps = 22/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L  A P ++          A+    + LGLDLRGG H +L+VD    +N  L   
Sbjct: 109 IVALNLQSASPTWMT---------ALRALPMYLGLDLRGGVHFLLQVDMAGALNKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R+ L+   +    + ++   + ++ AD    +     +   +  +         + 
Sbjct: 160 ASDVRTLLRDNNVRDGGVNRVNQSVVVNLADQATADAALKLLGRGVSELQW-----TSQP 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G++E  IQ+ G+ RI+++L
Sbjct: 215 SPGADGGVQLVGTFTPAVQRAVQDAALKQNITTLHNRVNELGVAEPVIQQQGADRIVVEL 274

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L+  +V  
Sbjct: 275 PGVQDTAKAKDIIGRTATLEARLADPVNTHPNPNDPVPPGDELFTQGNQAPVLLRKQVIF 334

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  R    +   
Sbjct: 335 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRDNIGKPMAMVLFERGKGEVLTV 393

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   + I+EER +G  LG+D+I KG  
Sbjct: 394 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGFH 453

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           ++V G   I +FMI  Y  +G+++   + +N++L +A+LS+L ATLTLP IA I L +G+
Sbjct: 454 SVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLVAVLSMLQATLTLPGIAAIALALGM 513

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+D+N+L+NER+REE R       ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 514 AIDANVLINERVREELRHGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 573

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           GFAI   + IL SMF+A+   R ++ F    KK   
Sbjct: 574 GFAIVHCIGILTSMFSAVFFSRGLVNFWYGGKKKLK 609



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+KG   V+    A+ +++
Sbjct: 407 TGQPTPQAAADLALLLRAGSLAAPMEIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFM 466

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   ++      L  +AA+   +G +++  V++ +R+
Sbjct: 467 IAYY-MLFGVISMIGLSVNLLLLVAVLSMLQATLTLPGIAAIALALGMAIDANVLINERV 525

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   +  FAI    G
Sbjct: 526 REELR---HGAPPQLAIQNGYAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAIVHCIG 582

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++ F Y  + K   +
Sbjct: 583 ILTSMFSAVFFSRGLVNFWYGGKKKLKSL 611



 Score = 40.8 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 42/156 (26%), Gaps = 33/156 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   IGL+  LPN   ++                           ++V 
Sbjct: 3   RYPLWKYAVMLVALVIGLVYTLPNLYGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117
                          + + L    I   ++    ++    I +   D+  +  + D +  
Sbjct: 38  SGKATVRLDATTLASVEAALAGNQIKPTAVTFDNSQNNANIRVRLTDTDTQLRVKDLLQK 97

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
            L         DP+  + +       + + +   + 
Sbjct: 98  SLN----SDPNDPQYIVALNLQSASPTWMTALRALP 129


>gi|86604805|ref|YP_473568.1| preprotein translocase subunit SecF [Synechococcus sp. JA-3-3Ab]
 gi|86553347|gb|ABC98305.1| protein-export membrane protein SecF [Synechococcus sp. JA-3-3Ab]
          Length = 331

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 84/316 (26%), Positives = 155/316 (49%), Gaps = 15/316 (4%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT------HGLNYGIDF 575
            +     +             +        +S+   +  +  +          L  G+DF
Sbjct: 5   ELSPTDPAVGSRRSLDYRFDIVGRSRLWFSLSLAVLLVGLVSMAFSLASLGTPLRLGLDF 64

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            GG  L +   +PV    +R  L+   +G    Q         +             +  
Sbjct: 65  AGGTLLDLRFEQPVTTDELRRALQEHDLGTSIIQLDTQTGQEALIRMPP-----LTEQER 119

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
             V+  + + +     +  E VGP + R L+R G+V V+IS   +++Y+ +RF+W +A+ 
Sbjct: 120 LAVEATLRQQIGPFERKLVETVGPTVGRLLLRSGLVAVLISFGLIVVYLALRFQWDYAVF 179

Query: 696 AITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
           AI  L+ D+  T G FAL G    +E +   + A+LT+IG+SVND VV+YDR+R+N++L 
Sbjct: 180 AIVALLHDVVLTTGLFALLGLTVGMEVDSLFLVALLTIIGFSVNDTVVIYDRIRENLRLV 239

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
           +  +SF ++++ S+N+T  RS+ T++   + ++ +A++GG+ +  FAI +  G  +   S
Sbjct: 240 SRKVSFAEVVNLSLNQTFARSLNTTLTTMLPLVAIAIFGGATLKGFAIALLIGFSLGVYS 299

Query: 812 SIFIAAPILLFIYDWR 827
           SIFIA+P+L++    R
Sbjct: 300 SIFIASPLLVWWRQRR 315


>gi|254180718|ref|ZP_04887316.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           1655]
 gi|184211257|gb|EDU08300.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           1655]
          Length = 674

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLSALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/356 (10%), Positives = 88/356 (24%), Gaps = 27/356 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +  S   K  + LG D        L   
Sbjct: 3   RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +  +            + +  + +   +       I +   D+  +  + D +   L  
Sbjct: 53  VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100

Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            +           L + + + +S      +    ++   +   ++  M     +      
Sbjct: 101 ADPNDPQYVVALNLQSASPRWLSALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           S++  Q          +               TA+ +   +  + S+  +          
Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               +    +  +    L         + ++  V     +        V    +      
Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                         A P        +       +     +A  L  K  I     +
Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336


>gi|318604598|emb|CBY26096.1| protein-export membrane protein SecD [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 495

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 160/507 (31%), Positives = 280/507 (55%), Gaps = 37/507 (7%)

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSF 102
           + LGLDLRGG H ++EVD D  +    +   D LRS L+++ I   ++R++ N  + + F
Sbjct: 1   MKLGLDLRGGVHFLMEVDMDTALGKLQEQTMDTLRSDLREKNIPYTTVRKLDNYGVEVRF 60

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
            D + +++             S L+   +  ++ +     +  V+S   + +   +A++Q
Sbjct: 61  RDDKTRDDAI-----------SYLSPRHRDLVIGSNGSNTLKAVMSDERLREAREYAVQQ 109

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
           ++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++LG TA + F  V  N  
Sbjct: 110 NITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATATLEFRLVNSNVD 169

Query: 223 KKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                 G            +G   ++  +V ++G H+  +T++ D    +  V+IS D  
Sbjct: 170 ASVAASGRVPGDSEVKNTREGRPVVLYKRVILTGDHITDSTSSTDEYN-QAQVNISLDSA 228

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VINQAIPSGKAQI 319
           G       T+DNIGKP+A +      +                       Q+      +I
Sbjct: 229 GGSAMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEVINVATIQSRLGNSFRI 288

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +G      A  L+ +LRAG+L   + IVEER +G  LGS +I +G  A + GL + +LFM
Sbjct: 289 TGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGSQNITQGLEACLWGLAVSILFM 348

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           +V Y K+G++A  ++  N++L + ++SLL  ATLT+P IAGIVL + +AVD+N+L+NERI
Sbjct: 349 VVYYRKFGVIASTALLANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERI 408

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
           +EE +  +++  ++  G+  A+S+I D+N+T LI  ++L+  G G+++GFAIT  + ++ 
Sbjct: 409 KEEYKNGRTIQQAIHEGYKGAFSSIVDANVTTLITAIILYAVGTGSIKGFAITTAIGVVT 468

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SMFTAI   RA++  +   K++  + I
Sbjct: 469 SMFTAIVGTRAIVNLLYGGKRINKLSI 495



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 320 TIGPTLGSQNITQGLEACLWGLAVSILFMVVYYR-KFGVIASTALLANLVLIVGVMSLLP 378

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++    Y    + +  I +         V 
Sbjct: 379 GATLTMPGIAGIVLTLAVAVDANVLINERIKEE---YKNGRTIQQAIHEGYKGAFSSIVD 435

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+V +  ++I     I+  +Y  +  N 
Sbjct: 436 ANVTTLITAIILYAVGTGSIKGFAITTAIGVVTSMFTAIVGTRAIVNLLYGGKRINK 492


>gi|323524787|ref|YP_004226940.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1001]
 gi|323381789|gb|ADX53880.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1001]
          Length = 686

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 164/517 (31%), Positives = 271/517 (52%), Gaps = 24/517 (4%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L                + LGLDLRGG H +L+VD    +N  L  
Sbjct: 108 FVVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDS 158

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            + + R+ L+   I    + ++   + ++FAD    +  A +++  +  +       P  
Sbjct: 159 DASDARTLLRDNNIRDGGVNRVNQTVVINFADQATADAAAKQLSRSIGELQWASQNGPDG 218

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
           ++ +  T        +      V   A++Q++  +  R++++G++E  IQ+ G+ RI+++
Sbjct: 219 SVQLVGT-------FTPTVQKAVQDAALKQNITTLHNRVNELGVAEPVIQQQGADRIVVE 271

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           LPG QD ++ + ++G TA +      P     N       G       +    L+  ++ 
Sbjct: 272 LPGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQII 331

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +  
Sbjct: 332 FTGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRSVSRDNIGKPMAMVLFEKGKGEVLT 390

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I KG 
Sbjct: 391 VATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGF 450

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            ++V G   I +FMI  Y  +G+++   + +N++L +A+LS+L ATLTLP IA I L +G
Sbjct: 451 HSVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALG 510

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NER+REE R       ++  G++ A++TI DSN+T LIA V L  FG G V
Sbjct: 511 MAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPV 570

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           RGFAI   + IL SMF+A+   R ++      KK   
Sbjct: 571 RGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 85/209 (40%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+KG   V+    A+ +++
Sbjct: 405 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFM 464

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   ++      L  +AA+   +G +++  V++ +R+
Sbjct: 465 IAYY-MLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERV 523

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ + +  +G   +  FAI    G
Sbjct: 524 REELR---NGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPVRGFAIVHCIG 580

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  I+   Y  + K   +
Sbjct: 581 ILTSMFSAVFFSRGIVNLWYGGKKKLKSL 609



 Score = 39.3 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 21/119 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   IGL+  LPN   ++   +    +   + ++ LD        L   
Sbjct: 3   RYPLWKYAVMLVALVIGLVYTLPNLFGEAPAVQ----VSSGKATVKLD-----STTLSA- 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            +  +            + +K E +   +       I +   D+  +  + D +   L 
Sbjct: 53  VETALAA----------NQIKPEDVTFDNSST-NANIRVRLLDTDTQLRVKDLLQKSLN 100


>gi|167031894|ref|YP_001667125.1| preprotein translocase subunit SecF [Pseudomonas putida GB-1]
 gi|166858382|gb|ABY96789.1| protein-export membrane protein SecF [Pseudomonas putida GB-1]
          Length = 302

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 159/287 (55%), Gaps = 5/287 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R     I++L ++ ++   +  GLN+G+DF GG  + +   RP DL  VR+
Sbjct: 1   MKTINFMGVRNVAFAITVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L      +   Q+F    + LVR+                   +       +T++  E 
Sbjct: 61  ELVDSGFHEAVVQSFGATTDLLVRMPGDDPQLGN----KVAAALQKAGGDNPATLKRVEF 116

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  TLG  + F I
Sbjct: 117 VGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQI 176

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     S  + I+ S  +TL R++ TS
Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINVSTTQTLLRTIATS 235

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++  +++  +  +GG  +  F++ +  G++    SSI+IA  +L+++
Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 105/259 (40%), Gaps = 5/259 (1%)

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
           F          + F              ++    A ++D     A V +    +      
Sbjct: 26  FSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRAELVDSGFHEAVVQSFGATTDLLVRM 85

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
                +    +AA L+         +     VG  +G +   +G   ++  L  I++++ 
Sbjct: 86  PGDDPQLGNKVAAALQKAGGDNPATLKRVEFVGPQVGEELRDQGGMGMLLALGGILIYLA 145

Query: 381 VLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
             +  K+ + A  S+  +V++TL +LS    T  L  +A ++  IG +++  I+V +R+R
Sbjct: 146 FRFQWKFAVGAIISLIHDVVVTLGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVR 205

Query: 440 EENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           E  R  +      ++  S       TI  S  T L    +LFF GG  + GF++ + + +
Sbjct: 206 ENFRVMRKASLIENINVSTTQTLLRTIATSVSTLLAIAALLFF-GGDNLFGFSLALFIGV 264

Query: 497 LISMFTAISIVRAMMIFII 515
           +   +++I I   ++I++ 
Sbjct: 265 MAGTYSSIYIANVVLIWLN 283


>gi|209695857|ref|YP_002263787.1| preprotein translocase subunit SecD [Aliivibrio salmonicida
           LFI1238]
 gi|208009810|emb|CAQ80117.1| protein-export membrane protein SecD [Aliivibrio salmonicida
           LFI1238]
          Length = 618

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 151/524 (28%), Positives = 276/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  ++  +    +  R+ L++  I
Sbjct: 104 NLAALTPDWLTSIGAKPMKLGLDLRGGVHFLMEVDMDAAMSKLVGQQEESFRTDLREAKI 163

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R      + +   ++   E   + ++   +        D       +  + ++  
Sbjct: 164 RYRAIRSSGKESVEVVLRNAEQLEEAKNVLSDAHR--------DMTFVDSESNGQFKLIA 215

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             +   + ++ ++A+EQ++ IIR R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 216 SFTDQRLQEIRNYAVEQNITIIRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275

Query: 206 LGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G     D +G   +++ ++ + G  +    ++
Sbjct: 276 LGATATLEFREVDDKADLSAAANGRAPAGSEIKEDRNGRPVVLKKRIILGGASITD-ASS 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    +R NIGK +A V                       
Sbjct: 335 SADEYGRPQVNISLDSEGGSKMTAFSRKNIGKLMATVFTEYKDSGRRTPEGRVILAKTEE 394

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 395 VINQATIQSALGRSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A + G+V ++LF ++ Y  +GLVA+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 455 MGVQACIWGMVAVMLFTLIYYRGFGLVANLALAANLVLIIGVMSMIPGATMTLPGIAGIV 514

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  ++   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 TGAIKGFAVTLSIGILTSMFTAIVGTRCVINLVYGGKRVDKLSI 618



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 88/210 (41%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G           +  +   ++   +I     +GP + ++ I  G+   I   +A
Sbjct: 407 RSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGVQACIWGMVA 466

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  I ++  F L A   L  ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 467 VMLFTLIYYR-GFGLVANLALAANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      + +  I +            ++   I+ + +   G   I  FA
Sbjct: 526 LIFERIREELRD---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 582

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     ++  +Y  + 
Sbjct: 583 VTLSIGILTSMFTAIVGTRCVINLVYGGKR 612



 Score = 43.1 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   +  I  L ALPN   +    +   +            RG         
Sbjct: 4   RFPLWKYLMVVSVLLIAALYALPNLYGEDPAVQITGS------------RG--------- 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D +   LK   I   S+      + + F D+  + +  D ++  L
Sbjct: 43  -----AEVQTSTLDVVAENLKNNNIAYKSIAFENGSVLVRFKDTDSQISARDIISQSL 95


>gi|313111950|ref|ZP_07797739.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa
           39016]
 gi|310884241|gb|EFQ42835.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa
           39016]
          Length = 1046

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++P+  P               +      
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +              +  IT++F      +    +V   LQ 
Sbjct: 54  AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++             + S  I+    D +  ++   
Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++G          
Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      A L          +           S   
Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            LS        +A        + +   ++ +                + +G +   V   
Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++S++   +  ++      F V      G   +      M+K       
Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++                  +  
Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q   I+ Q      + +        +++   + +      +   +
Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      LPMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +          + G    + ++G     +  +  PG S            K 
Sbjct: 790  VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W      +  + L
Sbjct: 850  LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L   ++ G+  ++     +LT IG S  + +++ +  ++   L+       +   
Sbjct: 907  GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKDIVEAAI 963

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++    L   V TS+A  + V+P+A+    G     +    +  G+V A   +IF
Sbjct: 964  EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018


>gi|303256882|ref|ZP_07342896.1| protein-export membrane protein SecF [Burkholderiales bacterium
           1_1_47]
 gi|330998869|ref|ZP_08322596.1| export membrane protein SecF [Parasutterella excrementihominis YIT
           11859]
 gi|302860373|gb|EFL83450.1| protein-export membrane protein SecF [Burkholderiales bacterium
           1_1_47]
 gi|329576083|gb|EGG57602.1| export membrane protein SecF [Parasutterella excrementihominis YIT
           11859]
          Length = 311

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/302 (30%), Positives = 160/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM+       IS +    +I LL   GL + I+F GG+ + V     V 
Sbjct: 1   MELFRIHKTIPFMKYSKILNAISFISFFIAIGLLVVRGLAFSIEFTGGLVMEVNYPDAVP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R +LE    G++   NF   ++  +RL  +   + AQ    E V K I E  P + 
Sbjct: 61  VQELRVDLEKATGGEVQVVNFGTARDAQIRLPLKGNKTSAQMS--EEVMKVIHEKAPEAQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL   G+  +++  + ++IY+  RF+W FA+ AI   + D+   LG 
Sbjct: 119 LRRTEFVGPQVGEELATDGLTALLLVIVGIMIYLAFRFEWKFAVAAIIANMHDVFLVLGV 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+LF  EF+L  +AAVL ++GYSVN+ V+++DR R+  +      +  +++D +I +T+ 
Sbjct: 179 FSLFQWEFSLPVLAAVLAVLGYSVNESVIIFDRCRECFRKIRKG-TPVEIVDTAITQTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R+V T  +  +  L M  +GG  +  FA+ +  GI++   SS+F++A I L++   R   
Sbjct: 238 RTVITHSSTLMVTLSMFFFGGPALHYFALALTIGILLGVYSSVFVSAAIALYLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|171464098|ref|YP_001798211.1| protein-export membrane protein SecF [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193636|gb|ACB44597.1| protein-export membrane protein SecF [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 324

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 159/305 (52%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  L+ +GL+  I+F GG  + V   +   
Sbjct: 1   MEFFRIKKDIPFMRHALVLNAISLVTFLAAVFFLWHNGLHLSIEFTGGTVMEVSYPQTAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  +R+ +E L   D   QNF    + ++RL  Q        +       V + +     
Sbjct: 61  LDSIRAKVEKLGYADTQIQNFGSSHDVMIRLPLQKDAEGKLISSADQSTAVLQVLDPATT 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G+  +I   I ++IY+  RF+W FA+  I   + D+   
Sbjct: 121 GVKLQRVEFVGPQVGQELAIDGLKALIFVIIGIVIYLSFRFEWKFAVAGIIANLHDVIII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+N + Y   ++ R++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRENFRKYRK-MNTREIIDNAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R+V T  +  + VL M ++GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTVITHGSTEMMVLAMLIFGGPTLFYFALALTIGILFGIYSSVFVAAALAMWLGVTR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|300721776|ref|YP_003711054.1| preprotein translocase auxillary membrane protein [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628271|emb|CBJ88832.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Xenorhabdus nematophila ATCC 19061]
          Length = 604

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 162/524 (30%), Positives = 281/524 (53%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ + K     + LGLDLRGG H ++EVD +  +    +   D LR  L+ +GI
Sbjct: 93  NLAPATPAWLSKVGAEPMKLGLDLRGGVHFLMEVDMETALGKLQEQNIDSLRVELRDQGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+I N  + + F DS  +    + +    +             +        +  
Sbjct: 153 AYSTIRKIDNYGVEVRFRDSDARSKAENYLEPRHR-----------DLVFSAGANNTLKA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +  S+A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMSDERLREARSYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +   + G            DGN  ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNIDQNAALAGRIPADSELQYTRDGNPAVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
            D   +   V+IS D  G       T+DN+ KP+A +                       
Sbjct: 322 TDENGYPQ-VNISLDSAGGTAMSNFTKDNLQKPMATLFVEYKDSGKKDANGRSLLVKKEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIATIQSRLGNNFRITGISNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNIE 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GLV  +LFM++ Y K+GL+A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 441 QGLEACLWGLVASILFMVIYYRKFGLIASSALLANLVLIVGIMSLLPGATLTMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE R  +++  ++  G+  A+S+I D+N+T LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELRNGRTIQQAIHEGYKGAFSSIIDANLTTLITAIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 561 TGSIKGFAITTSIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +A ++++ I ++  F L A + L+ ++   +G  +L  
Sbjct: 429 TIGPTLGLQNIEQGLEACLWGLVASILFMVIYYR-KFGLIASSALLANLVLIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ ++      + +  I +         + 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTIQQAIHEGYKGAFSSIID 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  + G+  +  ++I     I+  +Y  +  N 
Sbjct: 545 ANLTTLITAIILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|311105894|ref|YP_003978747.1| multidrug resistance protein [Achromobacter xylosoxidans A8]
 gi|310760583|gb|ADP16032.1| multidrug resistance protein MexB 1 [Achromobacter xylosoxidans A8]
          Length = 1060

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 76/687 (11%), Positives = 186/687 (27%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L     +  + ++P+  P            G  +      
Sbjct: 8   RPVFAWVIAIVLMMAGALSIL-----KLPVSQYPNIAPPAI---------GIAVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L              +  ITL+F+     +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQMNGLDGLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  ++++            + +  +     D I  ++   
Sbjct: 114 AQPLLPQEVQQQGIRVTKATKNFLIVAGFVSTDGSMTKDDLADYVASYVQDPISRTQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     TT  +       N        G            
Sbjct: 174 DFQLFGSQ-YAMRIWLDPAKLVNYGLTTVDVVTAIKEQNVQVSSGQLGGLPSVRGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +              K       +        +        I           
Sbjct: 233 TIIGPSRL-------------EKAEDFGRILLKVNADGSQVRLGDVSTIELGGQTYAIDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L+    P    +           S   
Sbjct: 280 FYNGKPASGLAVKLAPGANALDTAQAVRDTINNLKPYFPPGMDVVYPYDTTPFVSLSIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VFKTLIEAIILVFLVMYLFLQNFRATIIPTLAVPVVLLGTFGVLATFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     S+    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPKQATRKSMSQITGALIGIAMVLAAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  S+++S+  AI    A+   +           +       + + 
Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVIVAIVFTPALCATLLKPIPKGHHGAKKGFFGWFNRSF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   + +A    R++   V    L                  + +G +   +    
Sbjct: 520 ERSSNGYANTVARGLNRSKRLMVIYLALVLAMGWMFTRIPTAFLPDEDQGILFAQIQTPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  ++ ++      ++ +       F V      G     + +   ++        
Sbjct: 580 GATAEATKAVIDDATKYLLTEEKDAVTSVFAVNGFNFGGRGQNASILFIKLRDWEERGDA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
                          R+  R+G + V+
Sbjct: 640 RLKAGAVAQRANAHFRKTERRGQLFVV 666



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 76/201 (37%), Gaps = 7/201 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                V + +        P   +       P +S  +       +I + I + + +++  
Sbjct: 301 DTAQAVRDTINNLKPYFPPGMDVVYPYDTTPFVSLSIHE-VFKTLIEAIILVFLVMYLFL 359

Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           + +   +     + + +  T G  A FG   N   +  ++  IG  V+D +VV + +   
Sbjct: 360 QNFRATIIPTLAVPVVLLGTFGVLATFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--E 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +    +S +    KS+++  G  +  +M      +PMA +GGS       F+I +   
Sbjct: 418 RVMAEEGLSPKQATRKSMSQITGALIGIAMVLAAVFIPMAFFGGSTGVIYRQFSITIVSS 477

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           +V++   +I     +   +  
Sbjct: 478 MVLSVIVAIVFTPALCATLLK 498



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 80/260 (30%), Gaps = 13/260 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V  S       S     ++  N     N   +         
Sbjct: 779  RMLPEDLNKWYVRNKAGDMVPFSAFAKATWSYGPQKLNRYNGVPSYNIQGQAAPGYSSGA 838

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +  K    +    T  + E              +  +  S I + + +   ++
Sbjct: 839  AMAEMENLASKLPVGVGFEWTGLSFEERLSGAQAP----ALYAI--SLIVVFLCLAALYE 892

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L I   L    + G+  ++     +LT IG +  + +++ +  ++  
Sbjct: 893  SWTIPSAVMLVVPLGIIGALLATMMRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKE-- 950

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
              Y    S  +    +  + L   + TS+A  + V P+A+    G     +    +  G+
Sbjct: 951  -HYEQGASLTESAIHAARQRLRPILMTSLAFILGVTPLAISSGAGSGSQNAIGTGVIGGM 1009

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +     +IF      + +  
Sbjct: 1010 LTGTFLAIFFVPAFFVIMLR 1029


>gi|298530968|ref|ZP_07018369.1| protein-export membrane protein SecD [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298508991|gb|EFI32896.1| protein-export membrane protein SecD [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 534

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 178/539 (33%), Positives = 289/539 (53%), Gaps = 26/539 (4%)

Query: 1   MR-NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+ N  W + +  ++  + L   LP    +    R    +P  +++LGLDL+GG HL+L 
Sbjct: 1   MKANLRWKIPIILLVLLVSLAFFLPT-FSKVKDSRIGEYLPDRQLNLGLDLQGGIHLLLN 59

Query: 60  VDEDDFVNGFLQMYSDELR--SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           V+ +  +   L     ++R  +   +  +   S+     K+  +   S  +  +   ++ 
Sbjct: 60  VEVEKAMERSLSQAGLDIRDDARENQIHVLRPSV-NEDTKLEFTLLRSEQQGELEQLLSD 118

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +        + + +         +       D++    ++Q+++ IR RIDQ G++
Sbjct: 119 RHPNLQIVDTEALEDDRIR------YIMDYVPELKDEMHEMTMDQAVKTIRNRIDQFGLA 172

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
           E  I++   +R+ +QLPG  DP R  +++G TA + F  V  +   +           S 
Sbjct: 173 EPDIRKQEENRVQVQLPGMDDPDRAIEIVGQTAHLEFKLVDEDADVRRAEEDGVVPPGSR 232

Query: 237 -------------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
                             +++D   +SG H+  A   FD +   P V ++FD  GA  F 
Sbjct: 233 LYYQVTEGPDDTESKQPIVLKDDTLMSGEHITNAHTAFDERN-NPYVSLTFDSRGASIFE 291

Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343
            +T +NI + LA+VLDG V + PVI + I  G+A I+G FT++ A  L+ +LRAG+LP  
Sbjct: 292 RITGENIQERLAIVLDGEVYSTPVIQERISGGRASITGQFTVQEAHDLSVVLRAGALPAP 351

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
           ++I+EER VG  LG +SI +G  + + G  L+V F+I  YG  G+VA+  + LN+IL LA
Sbjct: 352 VHIMEERTVGPSLGQESIERGVNSALIGGALVVAFIIFYYGFAGVVANTVLALNIILILA 411

Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
            L+  GATLTLP IAGI+L IG+AVD+N+L+ ERIREE R+  S   ++  G++RA  TI
Sbjct: 412 GLAGFGATLTLPGIAGIILTIGIAVDANVLIFERIREELRRGLSPRAAVQEGYNRATLTI 471

Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            D+N+T +IA ++L+ FG G VRGFA+T+ L IL SMFTAI + R +    I  +K ++
Sbjct: 472 LDANVTTVIAAMILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRVIFDIWIASRKPQT 530



 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 105/247 (42%), Gaps = 5/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             +    ++  L  +  G++       E+    R       +V +   L +V +      
Sbjct: 291 ERITGENIQERLAIVLDGEVYSTPVIQERISGGRASITGQFTVQEAHDLSVVLRAGALPA 350

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P+  ++   + GP + +E I +G+   +I    ++ +I   + +   + A T L L+I  
Sbjct: 351 PVHIMEERTV-GPSLGQESIERGVNSALIGGALVVAFIIFYYGF-AGVVANTVLALNIIL 408

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L   A FG    L  +A ++  IG +V+  V++++R+R+ ++     +S R  + +  N
Sbjct: 409 ILAGLAGFGATLTLPGIAGIILTIGIAVDANVLIFERIREELR---RGLSPRAAVQEGYN 465

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                 +  ++   I+ + +  +G   +  FA+ +  GI+ +  ++IF++  I       
Sbjct: 466 RATLTILDANVTTVIAAMILYQFGTGPVRGFAVTLTLGILASMFTAIFVSRVIFDIWIAS 525

Query: 827 RAKNARI 833
           R     +
Sbjct: 526 RKPQTAL 532


>gi|254228675|ref|ZP_04922099.1| protein-export membrane protein SecD [Vibrio sp. Ex25]
 gi|151938854|gb|EDN57688.1| protein-export membrane protein SecD [Vibrio sp. Ex25]
 gi|324039568|dbj|BAJ78589.1| protein-export membrane protein D-1 [Vibrio alginolyticus]
          Length = 618

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 156/528 (29%), Positives = 276/528 (52%), Gaps = 45/528 (8%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +   +    +  RS L++  I
Sbjct: 104 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE---- 142
              ++R               KE +   +    Q   +K  ++     ++          
Sbjct: 164 RYRAIRPSG------------KEAVEVLLRNEEQLAEAKAMLEKNHPDMLFVESDSNGRY 211

Query: 143 -ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
            ++   ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R
Sbjct: 212 ALTATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAR 271

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
            +++LG TA + F +V                G     D DG   +++ +V + G  +  
Sbjct: 272 AKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD 331

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV-------------- 302
             ++   +  +P V+IS D  G  +    ++ NIGK +A V                   
Sbjct: 332 -ASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILD 390

Query: 303 ----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G 
Sbjct: 391 KHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQ 450

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
            +I  G  A + G+V ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP I
Sbjct: 451 QNIDMGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGI 510

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGIVL +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++L
Sbjct: 511 AGIVLTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIIL 570

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           F  G GAV+GFA+T+ + IL SMFTAI   R ++  I   K++  + I
Sbjct: 571 FAVGTGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLIYGGKRVDKLSI 618



 Score =  144 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 466

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 467 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   +  FA
Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 582

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     I+  IY  + 
Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLIYGGKR 612



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++         L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVFFAIITAALYALPNIYGEDPAIQVTGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D + + L KE +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTTALDKEQLSHKSIALENGSILVRFNDTDTQISARDVISEAL 95


>gi|269797662|ref|YP_003311562.1| protein-export membrane protein SecF [Veillonella parvula DSM 2008]
 gi|282850107|ref|ZP_06259489.1| protein-export membrane protein SecF [Veillonella parvula ATCC
           17745]
 gi|269094291|gb|ACZ24282.1| protein-export membrane protein SecF [Veillonella parvula DSM 2008]
 gi|282580296|gb|EFB85697.1| protein-export membrane protein SecF [Veillonella parvula ATCC
           17745]
          Length = 297

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 147/289 (50%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           +   W   IS    I S+  +FT G N+GID+ GG  + V+ ++PV++S VR  L+   +
Sbjct: 7   KHHRWWFAISSTLVIISLISIFTKGFNFGIDYTGGTIVEVVFDQPVEVSQVRDVLKEYNL 66

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            +   Q                     ++     V   +T+ +  +T++  E VG  I  
Sbjct: 67  ENAQIQLSGDTTGDTAGEDVMIRTRNLESSESAAVVDSLTKSIGNNTVKRIETVGAVIGS 126

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           E+    ++ ++I+  A+ +YI  RF++  A+ A+  +  D+   LG F+ F +E + + +
Sbjct: 127 EVTEHALLNLVIAFAALALYISYRFEYKVAISALVAIFHDLIMVLGVFSYFQLEIDASFL 186

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA+LT++GYS+N+ VV++DR+R+N   +  S +F DL + SI +++ RS YT      + 
Sbjct: 187 AAILTVVGYSMNESVVIFDRVRENTHTHKRSDTFADLANASITQSIHRSFYTLATVMFAC 246

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + + ++GG    +FA+ M  G    A SSI +A  + +        + R
Sbjct: 247 VSLYLFGGDTTKNFALCMIIGFASGAYSSICVATSLWVMWKSRNKNDVR 295


>gi|325916538|ref|ZP_08178804.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937]
 gi|325537211|gb|EGD08941.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937]
          Length = 693

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 74/683 (10%), Positives = 183/683 (26%), Gaps = 45/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++PS  P               + +  + 
Sbjct: 8   RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPA-------------VAITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +K       +   S       ITL+F +    +    +V  
Sbjct: 50  PGASAQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFDNGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +  T      + +     +    +  + S  +     + I   
Sbjct: 110 KLSLATPLLPQEVQQQGVTVTKSATNFVNVLAFTSEDGSMNDSDLSDYVAANVQETISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP +L     T   +       N        G      + 
Sbjct: 170 EGVGDTTLFGSQ-YAMRIWLDPDKLSNFNLTPVDVRTAIQAQNAQVSAGQLGALPAVANQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNATITAQTRL-------------KTAEQFENILLRTQADGSQVRLRDVARVELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T+               P                
Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEQFFPPGMKVQKPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++
Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E I+      +    +   G  +    +  +    +   + +
Sbjct: 396 FAMVLAIGLLVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPV 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
            F  G      R  A+ +  ++ IS F A+++   M   +             +  N   
Sbjct: 456 GFLEGNTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRSHSEAKPNRFHLWFNGRM 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           +        +++    R W   + +L ++ +   L +   +     +      ++ + P 
Sbjct: 516 QAVSGAYGRSLERHVHRTWIFALLMLLALGASAWLMSRIPSELAPAEDRGNFQIMIDGPE 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                 +  +  Q+ DI       ++  +      PG   +   +         +     
Sbjct: 576 GAGFDYTVGQMHQVEDILRPYVGPDQPIVRANPRVPGGFGSSEEMHTGRVSVFLQDWEKR 635

Query: 650 TIQNTEIVGPKISRELIRKGIVG 672
           T   TE+      +  +  G+  
Sbjct: 636 TRPTTEVADELQQKLNVLSGVRA 658



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 68/212 (32%), Gaps = 4/212 (1%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++   R ++   ++  +  
Sbjct: 258 SQVRLRDVARVELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEQFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   + A++  IG  V+D +VV + +    +             +  
Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENI---QRRIDLGEPPLVAAKRGT 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
            +     + T+       LP+    G+    F
Sbjct: 435 GQVAFAVIATTAVLVAVFLPVGFLEGNTGRLF 466


>gi|218889168|ref|YP_002438032.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexB [Pseudomonas aeruginosa LESB58]
 gi|218769391|emb|CAW25151.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexB [Pseudomonas aeruginosa LESB58]
          Length = 1046

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++P+  P               +      
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +              +  IT++F      +    +V   LQ 
Sbjct: 54  AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++             + S  I+    D +  ++   
Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++G          
Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      A L          +           S   
Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            LS        +A        + +   ++ +                + +G +   V   
Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++S++   +  ++      F V      G   +      M+K       
Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++                  +  
Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q   I+ Q      + +        +++   + +      +   +
Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      LPMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +          + G    + ++G     +  +  PG S            K 
Sbjct: 790  VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W      +  + L
Sbjct: 850  LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L   ++ G+  ++     +LT IG S  + +++ +  ++   L+       +   
Sbjct: 907  GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++    L   V TS+A  + V+P+A+    G     +    +  G+V A   +IF
Sbjct: 964  EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018


>gi|238019739|ref|ZP_04600165.1| hypothetical protein VEIDISOL_01614 [Veillonella dispar ATCC 17748]
 gi|237863780|gb|EEP65070.1| hypothetical protein VEIDISOL_01614 [Veillonella dispar ATCC 17748]
          Length = 298

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 80/289 (27%), Positives = 147/289 (50%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           +   W   IS    I S+  +FT G N+GID+ GG  + V+ ++PV++S VR  L+   +
Sbjct: 7   KHHRWWFAISSTLVIISLISIFTKGFNFGIDYTGGTIVEVVFDQPVEVSQVRDVLKEYNL 66

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            +   Q                     +      V + +T+ +  +T++  E VG  I  
Sbjct: 67  ENAQIQLSGDTTGDTAGEDVMIRTRNLEPSESAAVIESLTKSIGNNTVKRIETVGAVIGS 126

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           E+    ++ ++I+  A+ +YI  RF++  A+ A+  +  D+   LG F+ F +E + + +
Sbjct: 127 EVTEHALLNLVIAFAALALYISYRFEYKVAISALVAIFHDLIMVLGVFSYFQLEIDASFL 186

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA+LT++GYS+N+ VV++DR+R+N   +  S +F DL + SI +++ RS YT      + 
Sbjct: 187 AAILTVVGYSMNESVVIFDRVRENTHTHKRSDTFADLANASITQSIHRSFYTLATVMFAC 246

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + + ++GG    +FA+ M  G    A SSI +A  + +        + R
Sbjct: 247 VSLYLFGGDTTKNFALCMIIGFASGAYSSICVATSLWVMWKSRNKNDIR 295


>gi|188534661|ref|YP_001908458.1| preprotein translocase subunit SecF [Erwinia tasmaniensis Et1/99]
 gi|188029703|emb|CAO97582.1| Protein-export membrane protein [Erwinia tasmaniensis Et1/99]
          Length = 322

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 88/301 (29%), Positives = 165/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            S   +      I FMR       IS +  I ++ ++   G N+G+DF GG  + +   +
Sbjct: 5   HSVEQMNHGRKVIDFMRWDKLAFIISGILLIVAVAIIGVRGFNWGLDFTGGTVIEINLEQ 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL ++R +L+     +   QNF   ++ LVR+    G+   +    +++         
Sbjct: 65  PADLDMMRESLQKAGFAEPQVQNFGSSRDVLVRMPPAEGN-AGEALGSKVLGVINEATGQ 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+L YI  RF+W  ALG +  L  D+  T
Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGGMALLSALIAILFYIGFRFEWRLALGTVLALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  ++F IE +LT +A+++++IGYS+NDK+VV DR+R+N +      S+ D+ + S+ +
Sbjct: 184 MGLLSMFKIEIDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNISLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS+     V+ + ++GG+++  F++ M  GI +   SSI++++ + L +   R
Sbjct: 243 TLSRTIITSVTTLAMVVILFIFGGALLKGFSLTMLIGITIGTISSIYVSSALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|120613274|ref|YP_972952.1| preprotein translocase subunit SecF [Acidovorax citrulli AAC00-1]
 gi|120591738|gb|ABM35178.1| protein translocase subunit secF [Acidovorax citrulli AAC00-1]
          Length = 317

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS +    ++  L T GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIKKDIPFMKHALVFNAISFITFALAVFFLVTRGLHLSVEFTGGTVMEVAYTQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              VR  + SL   D+  QNF   ++ ++RL  Q G + AQ    E V   +    P  T
Sbjct: 61  TGKVREAVSSLGYSDVIVQNFGTSRDVMIRLPVQKGATSAQQS--EQVMGALKAQDPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL+  G++ + +  + +++Y+  RF+W F + AI   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGEELVHGGLMALAMVVVGIVVYLAFRFEWKFGVAAIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +A VL ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAGVLAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +    VL M  +GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|238760780|ref|ZP_04621891.1| Protein-export membrane protein secF [Yersinia aldovae ATCC 35236]
 gi|238701003|gb|EEP93609.1| Protein-export membrane protein secF [Yersinia aldovae ATCC 35236]
          Length = 322

 Score =  211 bits (537), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 167/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   G+S+L  I SI ++ T G N+G+DF GG  + V  ++
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLIASIAVMSTKGFNWGLDFTGGTVIEVSLDK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  LE         QNF   ++ ++R+    G    Q    +++      +  
Sbjct: 65  PADLDQLRDTLEKAGFESPILQNFGSTRDVMIRMPPATGT-AGQELGNKVISIINESVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + ++I+ + +L+Y+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGAMALLIALLCILVYVGFRFEWRLALGAVIALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 LGVLSLFHIEVDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|325272154|ref|ZP_08138585.1| preprotein translocase subunit SecF [Pseudomonas sp. TJI-51]
 gi|324102717|gb|EGC00133.1| preprotein translocase subunit SecF [Pseudomonas sp. TJI-51]
          Length = 302

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 159/287 (55%), Gaps = 5/287 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R     I++L ++ ++   +  GLN+G+DF GG  + +   RP DL  VR+
Sbjct: 1   MKTINFMGVRNVAFAITVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L      +   Q+F    + LVR+                   +       +T++  E 
Sbjct: 61  ELVDSGFHEAVVQSFGATTDLLVRMPGDDPQLGN----KVAAALQKAGGDNPATLKRVEF 116

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  TLG  + F I
Sbjct: 117 VGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQI 176

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     S  + I+ S  +TL R++ TS
Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINVSTTQTLLRTIATS 235

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++  +++  +  +GG  +  F++ +  G++    SSI+IA  +L+++
Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 105/259 (40%), Gaps = 5/259 (1%)

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
           F          + F              ++    A ++D     A V +    +      
Sbjct: 26  FSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRAELVDSGFHEAVVQSFGATTDLLVRM 85

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
                +    +AA L+         +     VG  +G +   +G   ++  L  I++++ 
Sbjct: 86  PGDDPQLGNKVAAALQKAGGDNPATLKRVEFVGPQVGEELRDQGGMGMLLALGGILIYLA 145

Query: 381 VLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
             +  K+ + A  S+  +V++TL +LS    T  L  +A ++  IG +++  I+V +R+R
Sbjct: 146 FRFQWKFAVGAIISLIHDVVVTLGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVR 205

Query: 440 EENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           E  R  +      ++  S       TI  S  T L    +LFF GG  + GF++ + + +
Sbjct: 206 ENFRVMRKASLIENINVSTTQTLLRTIATSVSTLLAIAALLFF-GGDNLFGFSLALFIGV 264

Query: 497 LISMFTAISIVRAMMIFII 515
           +   +++I I   ++I++ 
Sbjct: 265 MAGTYSSIYIANVVLIWLN 283


>gi|148546110|ref|YP_001266212.1| preprotein translocase subunit SecF [Pseudomonas putida F1]
 gi|148510168|gb|ABQ77028.1| protein translocase subunit secF [Pseudomonas putida F1]
          Length = 302

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 159/287 (55%), Gaps = 5/287 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R     I++L ++ ++   +  GLN+G+DF GG  + +   RP DL  VR+
Sbjct: 1   MKTINFMGVRNVAFAITVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L      +   Q+F    + LVR+                   +       +T++  E 
Sbjct: 61  ELVDSGFHEAVVQSFGATTDLLVRMPGDDPQLGN----KVAAALQKAGGDNPATVKRVEF 116

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  TLG  + F I
Sbjct: 117 VGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIVSLIHDVVVTLGILSFFQI 176

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     S  + I+ S  +TL R++ TS
Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINVSTTQTLLRTIATS 235

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++  +++  +  +GG  +  F++ +  G++    SSI+IA  +L+++
Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 50/259 (19%), Positives = 105/259 (40%), Gaps = 5/259 (1%)

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
           F          + F              ++    A ++D     A V +    +      
Sbjct: 26  FSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRAELVDSGFHEAVVQSFGATTDLLVRM 85

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
                +    +AA L+         +     VG  +G +   +G   ++  L  I++++ 
Sbjct: 86  PGDDPQLGNKVAAALQKAGGDNPATVKRVEFVGPQVGEELRDQGGMGMLLALGGILIYLA 145

Query: 381 VLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
             +  K+ + A  S+  +V++TL +LS    T  L  +A ++  IG +++  I+V +R+R
Sbjct: 146 FRFQWKFAVGAIVSLIHDVVVTLGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVR 205

Query: 440 EENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           E  R  +      ++  S       TI  S  T L    +LFF GG  + GF++ + + +
Sbjct: 206 ENFRVMRKASLIENINVSTTQTLLRTIATSVSTLLAIAALLFF-GGDNLFGFSLALFIGV 264

Query: 497 LISMFTAISIVRAMMIFII 515
           +   +++I I   ++I++ 
Sbjct: 265 MAGTYSSIYIANVVLIWLN 283


>gi|213027197|ref|ZP_03341644.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 300

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 159/282 (56%), Gaps = 1/282 (0%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
           FW  GIS L  I +I ++   G N+G+DF GG  + +   +P ++ V+R  L+     + 
Sbjct: 1   FWAFGISGLLLIAAIVIMGVRGFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAGYEEP 60

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             QNF    + +VR+    G++  Q    ++V          + ++  E VGP +  +L 
Sbjct: 61  QLQNFGSSHDIMVRMPPTEGETGGQVLGSKVVTIINEATNQNAAVKRIEFVGPSVGADLA 120

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           + G + ++++ I++L+Y+  RF+W  A G +  L  D+  TLG  +LF IE +LT VA++
Sbjct: 121 QTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASL 180

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +++IGYS+ND +VV DR+R+N +       + ++ + S+ +TL R++ TS    + +L +
Sbjct: 181 MSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSGTTLVVILML 239

Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R 
Sbjct: 240 YLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 281


>gi|313201914|ref|YP_004040572.1| protein-export membrane protein secf [Methylovorus sp. MP688]
 gi|312441230|gb|ADQ85336.1| protein-export membrane protein SecF [Methylovorus sp. MP688]
          Length = 312

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 94/289 (32%), Positives = 165/289 (57%), Gaps = 3/289 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM        IS++  + S+  L   GLN G+DF GG  + V   +  D+  +R  ++
Sbjct: 10  IPFMSYGRLTTAISLITFLLSVFFLAHRGLNLGVDFTGGTMMEVSYPQAADIGKIREAVD 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           S+ + D + QNF   ++ L+RL  +P   ++ + + E V   + +  P   +   E VG 
Sbjct: 70  SVGLKDATVQNFGTSRDVLIRLPLKP--ELSISALSEQVLTALQKADPNVKMNRVESVGA 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++ +EL   G + +++ +I ++ Y+ +RF+W FA+ A+   + D+   LGFFA F  EFN
Sbjct: 128 QVGQELYENGALALLLVSIGIMAYLALRFEWRFAVAAVIANMHDVVIILGFFAFFQWEFN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AAVL ++GYSVN+ VVV+DR+R+N +      S  ++I+ +I  T+ R+V T  + 
Sbjct: 188 LTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRK-ASVSEVINNAITRTMSRTVITHFST 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + VL M  +GG V+ +F++ +  GI+    SS+ +A+PI +++   R 
Sbjct: 247 QLMVLSMLFFGGEVLHNFSLALTIGILFGIYSSVLVASPIAMYLGVSRE 295


>gi|295111464|emb|CBL28214.1| protein-export membrane protein SecF [Synergistetes bacterium SGP1]
          Length = 288

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 86/292 (29%), Positives = 153/292 (52%), Gaps = 8/292 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 FM  R   + +S +  + S+  LFT GLN GIDF GG  + +  +   +++ VR
Sbjct: 1   MNRNYNFMALRRPALSLSAVLVLASLAFLFTRGLNLGIDFTGGNVIQLEFDNLPEVAEVR 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +  +   +   Q F  +             +       E V   + +  P   +   E
Sbjct: 61  KVVSGVVAQEAMIQKFGEKG-------VIIRTNEDTEESREQVISVLQKAFPDMKVSGYE 113

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL R+ ++GV I+ +A+LIYI +RF++ FA+ ++  L+ D+   LGFF+L  
Sbjct: 114 KVGPVVGGELRRQAVIGVSIALVAILIYITVRFRFRFAVVSVVPLVHDVLIALGFFSLTQ 173

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +E + + +AA+LT++GYS+N+ +++ DR+R+N +          L++ S+N+TL R++ T
Sbjct: 174 MEVSSSFIAAILTIVGYSLNNTIIILDRIRENWRDLGR-DGIEKLVNDSVNQTLARTINT 232

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++     V+ + VWGG V+ +F+  M  GI+    SS+ +A   L+  Y  R
Sbjct: 233 TLTTLFPVIALCVWGGPVLQAFSYAMLVGIIAGTYSSMLVATGALIEWYKAR 284


>gi|283784226|ref|YP_003364091.1| protein-export protein [Citrobacter rodentium ICC168]
 gi|282947680|emb|CBG87235.1| protein-export protein [Citrobacter rodentium ICC168]
          Length = 615

 Score =  211 bits (537), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 164/524 (31%), Positives = 290/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIKAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D+  ++     ++   Q             ++ +     +  
Sbjct: 164 PYTTVRKEDNYGLSINFRDASARDEAIAYLSKRHQ-----------DLVISSQGSNALRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G            +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQMREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL + +LFM++ Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLAVSILFMVLFYKKFGLIATSALIANLVLIVGVMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    +S+  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRSIQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +      ++++ + +K  F L A + LI ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLAVSILFMVLFYK-KFGLIATSALIANLVLIVGVMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   S +  I++           
Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSIQQAINEGYAGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612


>gi|237823426|pdb|2V50|A Chain A, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
 gi|237823427|pdb|2V50|B Chain B, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
 gi|237823428|pdb|2V50|C Chain C, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
 gi|237823429|pdb|2V50|D Chain D, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
 gi|237823430|pdb|2V50|E Chain E, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
 gi|237823431|pdb|2V50|F Chain F, The Missing Part Of The Bacterial Mexab-Oprm System:
           Structural Determination Of The Multidrug Exporter Mexb
          Length = 1052

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++P+  P               +      
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +              +  IT++F      +    +V   LQ 
Sbjct: 54  AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++             + S  I+    D +  ++   
Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++G          
Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      A L          +           S   
Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            LS        +A        + +   ++ +                + +G +   V   
Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++S++   +  ++      F V      G   +      M+K       
Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++                  +  
Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q   I+ Q      + +        +++   + +      +   +
Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      LPMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +          + G    + ++G     +  +  PG S            K 
Sbjct: 790  VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W      +  + L
Sbjct: 850  LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L   ++ G+  ++     +LT IG S  + +++ +  ++   L+       +   
Sbjct: 907  GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++    L   V TS+A  + V+P+A+    G     +    +  G+V A   +IF
Sbjct: 964  EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018


>gi|15595623|ref|NP_249117.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexB [Pseudomonas aeruginosa PAO1]
 gi|116054157|ref|YP_788600.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|12230911|sp|P52002|MEXB_PSEAE RecName: Full=Multidrug resistance protein MexB; AltName:
           Full=Multidrug-efflux transporter MexB
 gi|9946282|gb|AAG03815.1|AE004479_10 Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexB [Pseudomonas aeruginosa PAO1]
 gi|115589378|gb|ABJ15393.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 1046

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++P+  P               +      
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +              +  IT++F      +    +V   LQ 
Sbjct: 54  AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++             + S  I+    D +  ++   
Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++G          
Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      A L          +           S   
Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            LS        +A        + +   ++ +                + +G +   V   
Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++S++   +  ++      F V      G   +      M+K       
Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++                  +  
Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q   I+ Q      + +        +++   + +      +   +
Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      LPMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +          + G    + ++G     +  +  PG S            K 
Sbjct: 790  VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W      +  + L
Sbjct: 850  LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L   ++ G+  ++     +LT IG S  + +++ +  ++   L+       +   
Sbjct: 907  GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++    L   V TS+A  + V+P+A+    G     +    +  G+V A   +IF
Sbjct: 964  EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018


>gi|297539527|ref|YP_003675296.1| protein-export membrane protein SecD [Methylotenera sp. 301]
 gi|297258874|gb|ADI30719.1| protein-export membrane protein SecD [Methylotenera sp. 301]
          Length = 614

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 164/521 (31%), Positives = 277/521 (53%), Gaps = 30/521 (5%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             + LL   PN+L                + LGLDLRGG H +++VD    ++   + + 
Sbjct: 101 VALNLLSRSPNWLRSLGA---------KPMYLGLDLRGGVHFLMQVDMKAALSKAAERFV 151

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            + +  L+KE I    + +    + + F ++         +             +     
Sbjct: 152 GDFKIALRKERISYVGVSREGETVQIHFNNAEELTKAHAVIAKEY--------PNLTLEE 203

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
                EK +   L+      +   AI+Q+++ +  RI+++G++E  IQ+ G+ R+++QLP
Sbjct: 204 STIGEEKILKASLNLVEQKSIQDFAIKQNIQTLHNRINELGVAEPIIQQQGADRVVVQLP 263

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG---------FMFGVRFLRDSDGNQYLVED 245
           G QD ++ +++LG TA +    V    S               G    ++ DG   LV+ 
Sbjct: 264 GVQDTAKAKEILGRTATLEIRMVDEEKSDAATLEKAEKGQAPIGDDVFKNRDGRAVLVKK 323

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGR 301
            V ++G ++  A    D ++ +  V+++ D  GAR F +VTR+N+GK +           
Sbjct: 324 SVVLTGDYITDAGPGVDSQSGRSTVNVTLDARGARIFQQVTRENVGKRMAILLIEKGSTE 383

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V+TAP IN+ I  G+ QISG    + A  +A +LRAG+L   ++IVEER VG  +G D+I
Sbjct: 384 VITAPTINEEIGGGRVQISGMANTQEATDIALLLRAGALAAPMDIVEERTVGPSMGQDNI 443

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G  + + G   I + M++ Y  +G V+  ++ +N++L +A+LS+L ATLTLP +A I 
Sbjct: 444 NRGIHSTLWGFAAIAVMMMIYYVAFGAVSVTALAINLLLLVAILSMLQATLTLPGLAAIA 503

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+A+D+N+L+NERIREE R   +   S+  G+ RA+ TI DSN+T LIA + LF FG
Sbjct: 504 LALGMAIDANVLINERIREELRNGNTPQASIHAGYERAWDTILDSNVTTLIAGLALFMFG 563

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            G ++GFA+   L IL SMF+A+ + RA++  I  Y++  +
Sbjct: 564 TGPIKGFAVVHVLGILTSMFSAVLVSRAIVNLIYGYRRKLT 604



 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 89/205 (43%), Gaps = 4/205 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             Q      +  +   +     I     VGP + ++ I +GI   +    A+ + + I +
Sbjct: 406 NTQEATDIALLLRAGALAAPMDIVEERTVGPSMGQDNINRGIHSTLWGFAAIAVMMMIYY 465

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              F   ++T L +++   +   ++      L  +AA+   +G +++  V++ +R+R+ +
Sbjct: 466 -VAFGAVSVTALAINLLLLVAILSMLQATLTLPGLAAIALALGMAIDANVLINERIREEL 524

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      + +  I           + +++   I+ L + ++G   I  FA+    GI+ +
Sbjct: 525 R---NGNTPQASIHAGYERAWDTILDSNVTTLIAGLALFMFGTGPIKGFAVVHVLGILTS 581

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
             S++ ++  I+  IY +R K  ++
Sbjct: 582 MFSAVLVSRAIVNLIYGYRRKLTKL 606



 Score = 41.2 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 37/118 (31%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  IL +++  IGL+  +PNF  +S                           +++ 
Sbjct: 3   RYPMWKNILVAVMILIGLIYTIPNFFGESPA-------------------------VQIT 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D++    K+E I    + Q    +   F ++  +    D +   L
Sbjct: 38  PAKSTTKLDSALLDKVEDIFKQEKIEYDGVYQDARGVKARFKNTDTQIRAKDVLQANL 95


>gi|269965155|ref|ZP_06179289.1| protein-export membrane protein SecD [Vibrio alginolyticus 40B]
 gi|269830141|gb|EEZ84368.1| protein-export membrane protein SecD [Vibrio alginolyticus 40B]
          Length = 607

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 156/528 (29%), Positives = 275/528 (52%), Gaps = 45/528 (8%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +   +    +  RS L+   I
Sbjct: 93  NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKI 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE---- 142
              ++R               KE +   +    Q   +K  ++     ++          
Sbjct: 153 RYRAIRPSG------------KEAVEVLLRNEEQLAEAKATLEKNHPDMIFVDSDSNGRY 200

Query: 143 -ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
            ++   ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R
Sbjct: 201 ALTATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAR 260

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
            +++LG TA + F +V                G     D DG   +++ +V + G  +  
Sbjct: 261 AKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD 320

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV-------------- 302
             ++   +  +P V+IS D  G  +    ++ NIGK +A V                   
Sbjct: 321 -ASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILD 379

Query: 303 ----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G 
Sbjct: 380 KHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQ 439

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
            +I  G  A + G+V ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP I
Sbjct: 440 QNIDMGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGI 499

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGIVL +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++L
Sbjct: 500 AGIVLTVGMAVDANVLIFERIREEIRDGRSPQQAIHQGYANAFSTIADANITTLITAIIL 559

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           F  G GAV+GFA+T+ + IL SMFTAI   R ++  I   K++  + I
Sbjct: 560 FAVGTGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLIYGGKRVDKLSI 607



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   +  FA
Sbjct: 515 LIFERIREEIRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     I+  IY  + 
Sbjct: 572 VTLSIGILTSMFTAIIGTRCIVNLIYGGKR 601


>gi|54294898|ref|YP_127313.1| preprotein translocase subunit SecD [Legionella pneumophila str.
           Lens]
 gi|53754730|emb|CAH16217.1| hypothetical protein lpl1977 [Legionella pneumophila str. Lens]
          Length = 618

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 175/525 (33%), Positives = 279/525 (53%), Gaps = 38/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     + +  GLDLRGG H +LEVD +  ++   +     +   L++ GI
Sbjct: 103 NLAPSTPAWLEAIHADPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNIGQELREAGI 162

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +R + +K I L F DS   EN   ++   +  V            + T T+  I  
Sbjct: 163 RYSGIRYLSDKGIELRFRDSDSMENALVELRQKISDV----------VFVKTKTQNSILG 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +S   ++ +  + IEQ+M I+R R++++G+ E+ +Q+ G+ R+ + LPG QD +R +Q+
Sbjct: 213 AISPAELNSIRQNTIEQTMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + FH V   N             +      DG+  L++ +V +SG  +  A ++
Sbjct: 273 LGGTATLEFHLVDQENDPFIAKQTGVVPVNDKLYMMDGHPILLKRQVVLSGDSITSAVSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGR 301
           FD +T  P V I     G   F +VTR+NIGK +                    V     
Sbjct: 333 FDQQTASPSVQIQLGGGGESLFTKVTRENIGKRMAIVFVETKTTTQTINGEEKRVTKKEE 392

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            + +  + Q       QI+G    + A  LA +LRAG+LP  +  VEER VG  LG ++I
Sbjct: 393 RVISAPVIQNALGSNFQITGLTDSKEASNLALLLRAGALPAAIYPVEERTVGPTLGKENI 452

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G  ++  G+ LI+  M+V Y  +GL+AD ++ LN++   ALLS++ ATLTLP IAGIV
Sbjct: 453 RRGLISLEVGMGLILALMLVYYHFFGLIADIALMLNLVFLCALLSIIDATLTLPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R   S   ++  G+ RA+STI D+N+T LI  ++LF  G
Sbjct: 513 LTVGMAVDANVLIYERIREELRNGLSPQAAIHAGYERAFSTILDANVTTLIVAIILFAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            G VRGFA+ + L +L SM T I+  RA++ +    + +K + I 
Sbjct: 573 TGPVRGFAVVLSLGLLTSMLTGITYTRAIVNWYYGGRNVKKLSIG 617



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 96/255 (37%), Gaps = 4/255 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G     V          +    + +   +    +    +N L       G + ++     
Sbjct: 363 GKRMAIVFVETKTTTQTINGEEKRVTKKEERVISAPVIQNALGSNFQITGLTDSKEASNL 422

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +   +           VGP + +E IR+G++ + +    +L  + + + + F L A
Sbjct: 423 ALLLRAGALPAAIYPVEERTVGPTLGKENIRRGLISLEVGMGLILALMLVYYHF-FGLIA 481

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L+L++       ++      L  +A ++  +G +V+  V++Y+R+R+ ++     +S
Sbjct: 482 DIALMLNLVFLCALLSIIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELR---NGLS 538

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +  I           +  ++   I  + +   G   +  FA+ ++ G++ +  + I   
Sbjct: 539 PQAAIHAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVVLSLGLLTSMLTGITYT 598

Query: 817 APILLFIYDWRAKNA 831
             I+ + Y  R    
Sbjct: 599 RAIVNWYYGGRNVKK 613



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 39/118 (33%), Gaps = 27/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++  +I  IG + A+PN   ++ +                           V 
Sbjct: 4   KYPLWKNLMLIVIAVIGFVYAIPNLYTENPV---------------------------VQ 36

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                +   +   +++ S LK   +   S+   ++ + + F+ +  +    D +   L
Sbjct: 37  ISAGTDEDTETIKNQVESILKNANMDYKSLVVERDGVEVVFSSTDSQLLARDVIKNSL 94


>gi|3983168|gb|AAC83834.1| SecD [Salmonella enterica]
          Length = 615

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 295/524 (56%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS+ ++              + L    +  ++ + +  ++  
Sbjct: 164 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVKKLSI 615



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  I++           
Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVKK 612


>gi|315634698|ref|ZP_07889982.1| protein-export membrane protein SecF [Aggregatibacter segnis ATCC
           33393]
 gi|315476646|gb|EFU67394.1| protein-export membrane protein SecF [Aggregatibacter segnis ATCC
           33393]
          Length = 326

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 92/293 (31%), Positives = 157/293 (53%), Gaps = 6/293 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               ++FM+ R WG   S++    S+  +FT G N+G+DF GG+ +    ++P DL  +R
Sbjct: 24  PFRLVEFMKFRLWGYLASVVIIAVSLFFVFTKGFNWGLDFTGGVVVDTHFSQPADLEKIR 83

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S L    I     Q   G ++ ++RL           ++ + VKK +  +     I++ E
Sbjct: 84  STLVQNGIESPLVQTTGGVRDVMIRLPATD-----DAQIGDHVKKMLNTLDSDIQIRSIE 138

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + + I +L+Y+ +RF+W  A G + +L  D+  TLG F+   
Sbjct: 139 FVGPNVGEELTQGAIYATLATLIMLLLYVGMRFEWRLATGGVLSLAHDVIVTLGAFSYLQ 198

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT +AA+L+++GYS+ND +VV+DR+R+N +      +   +    + +TL R++ T
Sbjct: 199 IEMDLTFIAAILSVVGYSLNDSIVVFDRVRENFRKIRRISAIDIIDIS-LTQTLSRTIMT 257

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S+   I V+ + ++GG  I SF++ +  GI     SSIFIA  I   +   R 
Sbjct: 258 SLTTLIVVIALFIFGGPTIHSFSLALLIGIGFGTYSSIFIAIAIAYDLGLTRE 310


>gi|269138318|ref|YP_003295018.1| preprotein translocase subunit SecF [Edwardsiella tarda EIB202]
 gi|267983978|gb|ACY83807.1| preprotein translocase subunit SecF [Edwardsiella tarda EIB202]
 gi|304558349|gb|ADM41013.1| Protein-export membrane protein SecF [Edwardsiella tarda FL6-60]
          Length = 322

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 89/301 (29%), Positives = 166/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L      I FMR  +    +S L  + S  +++  G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNHGRKVIDFMRWDYVAFTLSGLLLLASCLVMYVKGFNWGLDFTGGTVIELTVEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             DL+ +R+ L      +   QNF   ++ ++R+    G+   Q     +V      I  
Sbjct: 65  APDLNAMRAALVKSGFDEPVVQNFGSSRDIMIRMAPISGN-AGQELGNRVVAVVEQVIDG 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + ++++ I++LIY+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGGMALLVALISILIYVGFRFEWRLALGAVLALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 LGVLSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIVNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + V+GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLVVVLCLYVFGGAMLKGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|103487198|ref|YP_616759.1| SecF protein [Sphingopyxis alaskensis RB2256]
 gi|98977275|gb|ABF53426.1| protein translocase subunit secF [Sphingopyxis alaskensis RB2256]
          Length = 327

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 112/298 (37%), Positives = 173/298 (58%), Gaps = 2/298 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD   IQF++ R   + IS+L  + SI L+   GLN G+DF GG  + V    
Sbjct: 1   MRLLKLVPDDTNIQFLKWRNVAMAISLLMIVASIALVAVRGLNLGVDFVGGQSVRVEFTG 60

Query: 588 -PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +  +R  + ++ +G+ + Q F  +K   +R     GD  A  R  + +   I +  
Sbjct: 61  AMPPIDEIREKVGAIGLGEATIQQFGSDKAVSIRTALPEGDKAAAERAGQRLVAGIADAF 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P +   + E V  K+S EL+R G + +I++ IA+ IYIWIRF+W F +GA+  L  D+T 
Sbjct: 121 PTAKTGSVETVSGKVSEELLRTGALSLILAMIAISIYIWIRFEWQFGVGALFALFHDVTL 180

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T GFFAL  ++F+L  VAA+LT+IGYS+ND +VV+DR+R+N+K Y   +    L+D S+N
Sbjct: 181 TFGFFALTQMQFDLNIVAALLTIIGYSLNDTIVVFDRIRENLKKYRK-MEIIPLLDLSVN 239

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           ETL R+V TS    I++  +   G  VI  F   M  GI V   SS++++APIL+++ 
Sbjct: 240 ETLARTVMTSFTMLIALAVLLWVGPDVIFGFTAAMLLGIFVGTYSSVYMSAPILVWLK 297


>gi|126174991|ref|YP_001051140.1| preprotein translocase subunit SecF [Shewanella baltica OS155]
 gi|160875989|ref|YP_001555305.1| preprotein translocase subunit SecF [Shewanella baltica OS195]
 gi|304411829|ref|ZP_07393440.1| protein-export membrane protein SecF [Shewanella baltica OS183]
 gi|307303403|ref|ZP_07583158.1| protein-export membrane protein SecF [Shewanella baltica BA175]
 gi|125998196|gb|ABN62271.1| protein translocase subunit secF [Shewanella baltica OS155]
 gi|160861511|gb|ABX50045.1| protein-export membrane protein SecF [Shewanella baltica OS195]
 gi|304349689|gb|EFM14096.1| protein-export membrane protein SecF [Shewanella baltica OS183]
 gi|306913763|gb|EFN44185.1| protein-export membrane protein SecF [Shewanella baltica BA175]
 gi|315268185|gb|ADT95038.1| protein-export membrane protein SecF [Shewanella baltica OS678]
          Length = 315

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 165/291 (56%), Gaps = 3/291 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + F+R       +S +  + S+  L T+G+N+G+DF GG  + +    PVDL+ +R  
Sbjct: 9   HTVNFLRHALPISIMSAVLVLGSLVSLATNGINWGLDFTGGTVVEMEFTNPVDLNALRVQ 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +        QNF   ++ LVRLQ + G        ++ V +   ++ P    +  E V
Sbjct: 69  LTTPDSEGAIVQNFGSSRDVLVRLQVKEGVKSDVQ--VKSVMEAAQKVDPQVQQKRVEFV 126

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++ +EL  +G + V+++ I ++IY+  RF+W  A G++  L  D+  TLG F++F +E
Sbjct: 127 GPQVGKELAEQGALAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSVFQLE 186

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +A +LT++GYS+ND +VV+DR+R+N      S    ++++ SI +T+ R++ T+ 
Sbjct: 187 FDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKS-DPEEVVNTSITQTMSRTIITTG 245

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 246 TTLVVVVALFLKGGTMIHGFATALLMGIFVGTYSSIYVASFLAIKLGINRE 296


>gi|34496799|ref|NP_901014.1| preprotein translocase subunit SecF [Chromobacterium violaceum ATCC
           12472]
 gi|34102654|gb|AAQ59019.1| protein-export membrane protein SecF [Chromobacterium violaceum
           ATCC 12472]
          Length = 311

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 167/299 (55%), Gaps = 3/299 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  L V   +  +
Sbjct: 1   MELFRIKRDIPFMSYGRLTTAISLVTFILAVFFLATRGLNFSVEFTGGTVLEVQYQQSAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  +++L++G+ + QN    ++ ++RL  +PG S AQ  + + V  ++    P   
Sbjct: 61  LDQVREKVDALKLGESTVQNLGTSRDVMIRLPNKPGTSTAQ--LSDKVMGQLKAADPTVQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  + VGP +  EL+  G+  VI+  + +++Y+ IRF+W FA+ AI   + D+   LG 
Sbjct: 119 LRKVDFVGPSVGEELVTHGLTAVILVCVGIMLYLAIRFEWRFAVAAIIANMHDVVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +       +  ++ID +I  T+
Sbjct: 179 FAFFRWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPGMRGHAVAEVIDNAITSTM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T  +  + V+ M V+GG  +  FA+ +  GIV    SS+ +A+PI L++   R 
Sbjct: 239 SRTIITHFSTEMMVVSMLVFGGPALHGFAMALTIGIVFGIYSSVLVASPIALWLGVKRE 297


>gi|37527757|ref|NP_931102.1| preprotein translocase subunit SecF [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787193|emb|CAE16273.1| Protein-export membrane protein SecF [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 322

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 95/301 (31%), Positives = 168/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR      GIS+L  + S+ ++ T G N+G+DF GG  + +  ++
Sbjct: 5   YTVEQLNYGRRVYDFMRWDNVAFGISLLLLVASVFVMATRGFNWGLDFTGGTVIEIKLSQ 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             DL  +R NL      D   QNF   ++ +VR+    G +  +    +++K     I  
Sbjct: 65  SADLDKMRDNLAKAGFEDPLLQNFGSSRDVMVRMPPVTG-AANEELGKKVIKVINDTIDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +++   EIVGP +  EL + G + ++ + I +LIY+  RF+W  ALGA+  L  D+  T
Sbjct: 124 DASVNRIEIVGPSVGAELAQDGAMALLAALICILIYVGFRFEWRLALGAVLALAHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +      S+ ++++ S+ +
Sbjct: 184 LGVLSLFRIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTSY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLLVVLMLYIFGGAMLKGFSLAMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|53726172|ref|YP_103940.1| preprotein translocase subunit SecD [Burkholderia mallei ATCC
           23344]
 gi|121601311|ref|YP_991652.1| preprotein translocase subunit SecD [Burkholderia mallei SAVP1]
 gi|124386375|ref|YP_001027148.1| preprotein translocase subunit SecD [Burkholderia mallei NCTC
           10229]
 gi|126448330|ref|YP_001082097.1| preprotein translocase subunit SecD [Burkholderia mallei NCTC
           10247]
 gi|167000541|ref|ZP_02266353.1| protein-export membrane protein SecD [Burkholderia mallei PRL-20]
 gi|217420899|ref|ZP_03452404.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           576]
 gi|238562008|ref|ZP_00441102.2| protein-export membrane protein SecD [Burkholderia mallei GB8 horse
           4]
 gi|254178803|ref|ZP_04885457.1| protein-export membrane protein SecD [Burkholderia mallei ATCC
           10399]
 gi|254207995|ref|ZP_04914345.1| protein-export membrane protein SecD [Burkholderia mallei JHU]
 gi|254355863|ref|ZP_04972141.1| protein-export membrane protein SecD [Burkholderia mallei
           2002721280]
 gi|52429595|gb|AAU50188.1| protein-export membrane protein SecD [Burkholderia mallei ATCC
           23344]
 gi|121230121|gb|ABM52639.1| protein-export membrane protein SecD [Burkholderia mallei SAVP1]
 gi|124294395|gb|ABN03664.1| protein-export membrane protein SecD [Burkholderia mallei NCTC
           10229]
 gi|126241200|gb|ABO04293.1| protein-export membrane protein SecD [Burkholderia mallei NCTC
           10247]
 gi|147751889|gb|EDK58956.1| protein-export membrane protein SecD [Burkholderia mallei JHU]
 gi|148024838|gb|EDK83016.1| protein-export membrane protein SecD [Burkholderia mallei
           2002721280]
 gi|160694717|gb|EDP84725.1| protein-export membrane protein SecD [Burkholderia mallei ATCC
           10399]
 gi|217396311|gb|EEC36328.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           576]
 gi|238523482|gb|EEP86920.1| protein-export membrane protein SecD [Burkholderia mallei GB8 horse
           4]
 gi|243063595|gb|EES45781.1| protein-export membrane protein SecD [Burkholderia mallei PRL-20]
          Length = 675

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/356 (9%), Positives = 88/356 (24%), Gaps = 27/356 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +  S   K  + LG D        L   
Sbjct: 3   RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +  +            + +  + +   +       I +   D+  +  + D +   L  
Sbjct: 53  VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100

Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            +           L + + + ++      +    ++   +   ++  M     +      
Sbjct: 101 ADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           S++  Q          +               TA+ +   +  + S+  +          
Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               +    +  +    L         + ++  V     +        V    +      
Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                         A P        +       +     +A  L  K  I     +
Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336


>gi|167586182|ref|ZP_02378570.1| preprotein translocase subunit SecD [Burkholderia ubonensis Bu]
          Length = 674

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 160/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ + I    + ++   + ++F+D +  E+    +   +  +           
Sbjct: 160 ASDARTLLRDKNIRDGGVSRVDQSVVVNFSDPQTAEDARKALASSVTELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ GS RI+++L
Sbjct: 215 ---GGGGVQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++  V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKDVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI+ Y  +G+++   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFVAIAVFMILYYMLFGMISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R       ++  G+S A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGHPPQLAIQAGYSHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 89/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI   +A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFVAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 ILYY-MLFGMISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I    +      + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GHPPQLAIQAGYSHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608



 Score = 40.8 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 29/124 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++                           ++V 
Sbjct: 3   RYPIWKYVVMVVALAIGFLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI----QNKITLSFADSRFKENIADKVTL 117
                         ++ + L    I    +          I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDSATLSQVEAALTAAQIKPDDVTFENTAANANIRVRLKDTDTQLRVKDLLQK 97

Query: 118 FLQG 121
            L  
Sbjct: 98  SLNA 101


>gi|317492968|ref|ZP_07951392.1| protein-export membrane protein SecD [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919090|gb|EFV40425.1| protein-export membrane protein SecD [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 618

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 161/526 (30%), Positives = 286/526 (54%), Gaps = 41/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H +++VD +  ++   +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLEAIGAEPMKLGLDLRGGVHFLMQVDMETALSKLQEQSMDMLRSDLREKGI 163

Query: 87  GVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
              ++R+       + ++F D+  ++  +  ++                 +     +  +
Sbjct: 164 PYSTIRKTDGSTNGVIITFRDAETRDKASSYLS----------PRYLNNLVFSKVGDNGL 213

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
             V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +
Sbjct: 214 KAVMTDQRLQEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAK 273

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGAT 258
           ++LG TA + F  V  N        G            DG   ++  +V ++G H+  +T
Sbjct: 274 EILGATATLEFRLVNSNADSTAAANGRVPGDSEVKYTRDGRPIVMYKRVILTGDHITDST 333

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------ 306
           ++   + ++P V+IS D  G       T+DNIGKP+A +      +              
Sbjct: 334 SS-QDEFNRPQVNISLDGAGGSAMSNFTKDNIGKPMATLFVEYKDSGKKDASGKSILAKQ 392

Query: 307 ------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                    Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG+ +
Sbjct: 393 EEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGAQN 452

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAG 419
           I +G  A +AGL++ +LFM+  Y K+GL+A  ++  N++L + ++SLL  ATLT+P IAG
Sbjct: 453 ITQGLEACLAGLIISILFMVFFYKKFGLIATSALLANLVLIVGIMSLLPGATLTMPGIAG 512

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL + +AVD+N+L+NERI+EE    +SV  +++ G+  A+S+IFD+N+T LI  ++L+ 
Sbjct: 513 IVLTLAVAVDANVLINERIKEELSNGRSVQQAINEGYQGAFSSIFDANVTTLIKVIILYA 572

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 573 VGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRINKLSI 618



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 77/177 (43%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   I  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 443 TIGPTLGAQNITQGLEACLAGLIISILFMVFFYK-KFGLIATSALLANLVLIVGIMSLLP 501

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  I++           
Sbjct: 502 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAINEGYQGAFSSIFD 558

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +  N 
Sbjct: 559 ANVTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRINK 615



 Score = 42.4 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 30/114 (26%), Gaps = 26/114 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I+  ++  IGLL ALPN   +                          +     
Sbjct: 4   RYPLWKYIMLILVIAIGLLYALPNLYGEDPA---------------------VQIT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                   L    DEL        I   S+      I   F D+  +    + +
Sbjct: 42  GVAASETTLVQVRDELEKQ----HIASKSIALENGAILARFKDTDVQLRAREVL 91


>gi|187931931|ref|YP_001891916.1| preprotein translocase subunit SecF [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712840|gb|ACD31137.1| preprotein translocase, subunit F, membrane protein [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 314

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/300 (28%), Positives = 159/300 (53%), Gaps = 3/300 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                   +I F+  + +    S+L  + S+  +FT GLN G+DF GG Q+ +  +    
Sbjct: 1   MEFFKQKTSIDFLGIKKYTTVFSVLMIVVSLFFIFTKGLNLGLDFTGGYQVQIQTSTKSQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--L 648
            S   +   +    + +     G+ N  +        +     + +  +    ++     
Sbjct: 61  DSETMTKELAKAGFEHTTITTFGDNNNFLIKFAPDEVNTKAKSLEDAQQYLKQQVENSLD 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           + +Q+   +GP++ +EL   G++ +I++ + +LIYI  RF+  F + A   L+ D    L
Sbjct: 121 AQVQSVNYIGPQVGKELASNGVLAIIVAMVCILIYISARFEMKFGISACIALLHDPIVIL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G F+ F +EF+LT +AAVL +IGYS+ND VV+YDR+R+N +    + S  +++++SIN+T
Sbjct: 181 GIFSAFQLEFDLTVLAAVLAVIGYSLNDTVVIYDRVRENFRKI-RNASVVEVVNRSINDT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS    + V+ + ++GGS + +F++ +  GIVV   SSI++A  + + +   R 
Sbjct: 240 LSRTILTSGLTMLVVVVLYLFGGSSVHNFSLAIILGIVVGTYSSIYVAGVVAVALGLNRE 299


>gi|53720479|ref|YP_109465.1| preprotein translocase subunit SecD [Burkholderia pseudomallei
           K96243]
 gi|52210893|emb|CAH36881.1| putative protein-export membrane protein [Burkholderia pseudomallei
           K96243]
          Length = 674

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/356 (9%), Positives = 88/356 (24%), Gaps = 27/356 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +  S   K  + LG D        L   
Sbjct: 3   RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +  +            + +  + +   +       I +   D+  +  + D +   L  
Sbjct: 53  VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100

Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            +           L + + + ++      +    ++   +   ++  M     +      
Sbjct: 101 ADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           S++  Q          +               TA+ +   +  + S+  +          
Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               +    +  +    L         + ++  V     +        V    +      
Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                         A P        +       +     +A  L  K  I     +
Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336


>gi|254468659|ref|ZP_05082065.1| protein-export membrane protein SecF [beta proteobacterium KB13]
 gi|207087469|gb|EDZ64752.1| protein-export membrane protein SecF [beta proteobacterium KB13]
          Length = 312

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 92/285 (32%), Positives = 166/285 (58%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I F++ R     ISI+  I +   LF  GLNYG+DF GG  + +      ++  +R  L 
Sbjct: 10  IPFLKYRKIAAFISIITFILAFFFLFQKGLNYGVDFTGGTIIEISYEEKANVDEIRGQLT 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            + + +I  QNF  +K+ L+R+     + ++   + E+V ++++++     I+  E VG 
Sbjct: 70  QINLNEIQVQNFGTDKDVLIRMPL--NEDISIAELSELVNQELSKLNNPFEIKRVESVGG 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  EL   G + ++   + +++Y+ +RF+W FAL A+   + D+   LGFFA F  EFN
Sbjct: 128 QVGEELFENGALAILFVCLGIILYLSLRFEWRFALAAVVANMHDVIIILGFFAFFQWEFN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AAVL ++GYSVN+ VVV+DR+R+N K    S S  D+++ +I  T+ R++ T ++ 
Sbjct: 188 LTVLAAVLAVLGYSVNESVVVFDRVRENFKKMRRS-SVIDVMNNAITRTMSRTIMTHLST 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
              V+ M ++GG ++ +F++ +  GI+    SSI +  P+ L++ 
Sbjct: 247 QTVVISMLIFGGEILHNFSLALTIGILFGIYSSIMVGCPMALWLG 291


>gi|262395134|ref|YP_003286988.1| protein-export membrane protein SecD [Vibrio sp. Ex25]
 gi|262338728|gb|ACY52523.1| protein-export membrane protein SecD [Vibrio sp. Ex25]
          Length = 607

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 156/528 (29%), Positives = 276/528 (52%), Gaps = 45/528 (8%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +   +    +  RS L++  I
Sbjct: 93  NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE---- 142
              ++R               KE +   +    Q   +K  ++     ++          
Sbjct: 153 RYRAIRPSG------------KEAVEVLLRNEEQLAEAKAMLEKNHPDMLFVESDSNGRY 200

Query: 143 -ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
            ++   ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R
Sbjct: 201 ALTATFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAR 260

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
            +++LG TA + F +V                G     D DG   +++ +V + G  +  
Sbjct: 261 AKEILGATATLEFREVDDKADLSAAANGRAPAGSEIKMDRDGRPVVLKKRVILGGQSITD 320

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV-------------- 302
             ++   +  +P V+IS D  G  +    ++ NIGK +A V                   
Sbjct: 321 -ASSSVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILD 379

Query: 303 ----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G 
Sbjct: 380 KHEEVINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQ 439

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
            +I  G  A + G+V ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP I
Sbjct: 440 QNIDMGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGI 499

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGIVL +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++L
Sbjct: 500 AGIVLTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIIL 559

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           F  G GAV+GFA+T+ + IL SMFTAI   R ++  I   K++  + I
Sbjct: 560 FAVGTGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLIYGGKRVDKLSI 607



 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   +  FA
Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     I+  IY  + 
Sbjct: 572 VTLSIGILTSMFTAIIGTRCIVNLIYGGKR 601


>gi|294677320|ref|YP_003577935.1| protein-export membrane protein SecF [Rhodobacter capsulatus SB
           1003]
 gi|6647840|sp|O33518|SECF_RHOCA RecName: Full=Protein-export membrane protein secF
 gi|2252774|gb|AAB62802.1| SecF [Rhodobacter capsulatus SB 1003]
 gi|294476140|gb|ADE85528.1| protein-export membrane protein SecF [Rhodobacter capsulatus SB
           1003]
          Length = 333

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 110/318 (34%), Positives = 177/318 (55%), Gaps = 13/318 (4%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              R  L+P+     F R ++   G +I+  I S+ L    GLN+GIDFKGG  +   + 
Sbjct: 1   MAFRLKLVPEKTNFDFFRWQWATFGAAIVMMIASVILPLVIGLNFGIDFKGGTTIRTEST 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK------------NFLVRLQYQPGDSVAQTRV 634
             +D+ V R+ LE L++GD+                           Q   G       +
Sbjct: 61  TAIDVGVYRAALEPLELGDVIISEVRDPSFREDQHVAMIRIQMQEDGQGAEGQGAQGQEL 120

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           +  V+  +T + P   I + E VGPK+S EL+   +  ++ + + ++ YIW+RF+W FAL
Sbjct: 121 VNKVETALTAVDPALKITSFESVGPKVSGELVWTAVWSLLAATVVIMFYIWVRFEWQFAL 180

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
           GA+  L+ D+  T+G FA+  ++F+LT VAA+LT+ GYS+ND VVV+DR+R+N+  Y  +
Sbjct: 181 GAVVALVHDVLLTVGLFAVLQLKFDLTTVAALLTITGYSINDTVVVFDRLRENLIKY-KT 239

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
           +  RD+++ S+NETL R+V T M   ++++PM +WGG VI  F   M +G+     SS++
Sbjct: 240 MPLRDVMNLSVNETLSRTVMTGMTTLLALVPMLIWGGDVIRGFVFAMVWGVFTGTYSSVY 299

Query: 815 IAAPILLFIYDWRAKNAR 832
           +A  I+LFI   R K  +
Sbjct: 300 VAKNIVLFIGLDRNKEKK 317


>gi|152989597|ref|YP_001345921.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa PA7]
 gi|150964755|gb|ABR86780.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa PA7]
          Length = 1046

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++P+  P               +      
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +              +  IT++F      +    +V   LQ 
Sbjct: 54  AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++             + S  I+    D +  ++   
Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSAAIQAQNVQISSGQLGGLPAVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++G          
Sbjct: 233 TIIGKTRL-------------QTAEQFEKILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      A L          +           S   
Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            LS        +A        + +   ++ +                + +G +   V   
Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++S++   +  ++      F V      G   +      M+K       
Sbjct: 580 PGSTAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++                  +  
Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q   I+ Q      + +        +++   + +      +   +
Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      LPMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +          + G    + ++G     +  +  PG S            K 
Sbjct: 790  VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W      +  + L
Sbjct: 850  LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L   ++ G+  ++     +LT IG S  + +++ +  ++   L+       +   
Sbjct: 907  GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++    L   V TS+A  + V+P+A+    G     +    +  G+V A   +IF
Sbjct: 964  EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018


>gi|302871250|ref|YP_003839886.1| protein-export membrane protein SecF [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574109|gb|ADL41900.1| protein-export membrane protein SecF [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 310

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 9/303 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR- 595
              I FM  R +   +SIL  +  +   F  G NY IDF GG  L +  ++    + +  
Sbjct: 1   MTKIDFMGKRKYFYIVSILIMVIGLISYFVQGFNYDIDFTGGTVLEINLHKVPSAAEIAD 60

Query: 596 -SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--- 651
              L     G  +      E    + +         +T + +  + K+ E +        
Sbjct: 61  LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKNKTELSKETRDKLFEEIAKRYNLKK 120

Query: 652 ---QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + VG  IS EL  + I  V+I++I MLIYI IRF++ F   A+  LI D+   L
Sbjct: 121 EDLISYQNVGATISSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             + LF I  N T +AA+LT++GYS+ND +VV+DR+R+N ++    +  +DL++ S+N+T
Sbjct: 181 TVYTLFKIPLNSTFIAAILTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +GRS+ T+M+  I ++ + + G   I  F  P+  G++    SSIFIA  +         
Sbjct: 240 IGRSIATAMSVIIVLVVLYIMGVQSIKEFTFPLLIGVISGTYSSIFIATALWFDWELSTR 299

Query: 829 KNA 831
           K  
Sbjct: 300 KKK 302


>gi|76811131|ref|YP_334744.1| preprotein translocase subunit SecD [Burkholderia pseudomallei
           1710b]
 gi|126454226|ref|YP_001067601.1| preprotein translocase subunit SecD [Burkholderia pseudomallei
           1106a]
 gi|242314993|ref|ZP_04814009.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           1106b]
 gi|254258050|ref|ZP_04949104.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           1710a]
 gi|76580584|gb|ABA50059.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           1710b]
 gi|126227868|gb|ABN91408.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           1106a]
 gi|242138232|gb|EES24634.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           1106b]
 gi|254216739|gb|EET06123.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           1710a]
          Length = 674

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608



 Score = 47.4 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/356 (9%), Positives = 88/356 (24%), Gaps = 27/356 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +  S   K  + LG D        L   
Sbjct: 3   RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +  +            + +  + +   +       I +   D+  +  + D +   L  
Sbjct: 53  VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100

Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            +           L + + + ++      +    ++   +   ++  M     +      
Sbjct: 101 ADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           S++  Q          +               TA+ +   +  + S+  +          
Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               +    +  +    L         + ++  V     +        V    +      
Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                         A P        +       +     +A  L  K  I     +
Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336


>gi|56461247|ref|YP_156528.1| preprotein translocase subunit SecF [Idiomarina loihiensis L2TR]
 gi|56180257|gb|AAV82979.1| Preprotein translocase subunit SecF [Idiomarina loihiensis L2TR]
          Length = 315

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 98/298 (32%), Positives = 165/298 (55%), Gaps = 2/298 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              +I     + FMR R     IS +  + SI  L  + LN+G+DF GG  L V  +   
Sbjct: 1   MQEIIKTDERLPFMRFRGIMGIISAVLVVASIVSLSVNKLNFGLDFTGGTLLEVGFDSAA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DLS VR  L+     D   QN+  ++  L+RL+ + G   A+     +++   TE     
Sbjct: 61  DLSRVRGALDEEGFSDAVVQNYGSQEEILIRLEPREG-VKAEQLGTTILESLRTEFDQTV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  E I +G + ++ + I +L+YI +RF+W  A+GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDEFIEQGGLAMLTALICILLYIAMRFEWRLAVGAVAALAHDVILTLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  +EF+LT +AA+L +IGYS+ND VVV DR+R+  + +   ++    +++++ +TL
Sbjct: 180 LFSILQLEFDLTVLAALLAVIGYSINDTVVVCDRIRETFRKFAK-LTPVQTVNRALTDTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            R++ TS+   + +L +   GG +I  FA  + FG+V+   SSI+IA+ + L     R
Sbjct: 239 SRTLITSITTILVLLTLFFLGGPLIHGFATALLFGVVIGTYSSIYIASSVALKFGVSR 296


>gi|163802457|ref|ZP_02196350.1| protein export protein SecD [Vibrio sp. AND4]
 gi|159173758|gb|EDP58573.1| protein export protein SecD [Vibrio sp. AND4]
          Length = 618

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 153/524 (29%), Positives = 273/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +   +    +  RS L++  I
Sbjct: 104 NLAPSTPDWLEAVGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 163

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   +          +           + D K     +     +  
Sbjct: 164 RYRAIRPSGTEGVEVLLRNEEQLAEAKTTLVKN--------HPDMKFVDADSNGRYALIA 215

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 216 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275

Query: 206 LGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G     D DG   +++ +V + G  +    ++
Sbjct: 276 LGATATLEFREVDDKADLSAAASGRAPAGSEVKMDRDGRPVVLKKRVILGGQSITD-ASS 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    ++ NIGK +A V                       
Sbjct: 335 SADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILDKHEE 394

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 395 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A + G+V ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 455 MGIQACIWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 514

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GAV+GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 TGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLVYGGKRVDKLSI 618



 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 466

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 467 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   +  FA
Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 582

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     I+  +Y  + 
Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLVYGGKR 612



 Score = 42.0 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++         L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVFFAVITAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D +   L KE +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDSVTKALDKEQLSHKSIALENGSILVRFNDTDTQISARDIISEAL 95


>gi|237813729|ref|YP_002898180.1| preprotein translocase subunit SecD [Burkholderia pseudomallei
           MSHR346]
 gi|237505594|gb|ACQ97912.1| preprotein translocase subunit SecD [Burkholderia pseudomallei
           MSHR346]
          Length = 675

 Score =  211 bits (536), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 215

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608



 Score = 47.4 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/356 (9%), Positives = 88/356 (24%), Gaps = 27/356 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +  S   K  + LG D        L   
Sbjct: 3   RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +  +            + +  + +   +       I +   D+  +  + D +   L  
Sbjct: 53  VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLN- 100

Query: 122 VNSKLNVDPKKNLLVTTTEKEIS-----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            +           L + + + ++      +    ++   +   ++  M     +      
Sbjct: 101 ADPNDPQYVVALNLQSASPRWLTALHALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDA 160

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           S++  Q          +               TA+ +   +  + S+  +          
Sbjct: 161 SDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPGGGGYQ 220

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               +    +  +    L         + ++  V     +        V    +      
Sbjct: 221 VVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKA 280

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                         A P        +       +     +A  L  K  I     +
Sbjct: 281 KDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRI 336


>gi|93005935|ref|YP_580372.1| preprotein translocase subunit SecF [Psychrobacter cryohalolentis
           K5]
 gi|92393613|gb|ABE74888.1| protein translocase subunit secF [Psychrobacter cryohalolentis K5]
          Length = 414

 Score =  211 bits (536), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 97/324 (29%), Positives = 155/324 (47%), Gaps = 4/324 (1%)

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +    A+   +      +            + D   I FM+       +SI+  I SI  
Sbjct: 68  VFATTALDPSLALGDAAEDAAAYAEGGIKAVGDQRIIPFMKLEKPMGILSIILVIGSIIA 127

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +  +GLN G+DF GG+   V   + V+   V + L      D   Q     +  L+RL  
Sbjct: 128 IAVNGLNLGLDFTGGVSADVRYEQSVEQGDVVTALADNGFDDAVVQYLGTSQELLIRLPP 187

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
           Q   S     +   + + +        I N  I+G ++  E+    ++ ++++   ML Y
Sbjct: 188 Q---SDNIDGLNNSLSEALALPNNDVEISNVNIIGSQVGNEIYLSSVMSIVLALACMLGY 244

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           + +RF++  ALGA+ +L  D   T+G FALFG  F+LT +AA+L LIGYS+ND +VVYDR
Sbjct: 245 VALRFQFKLALGAVLSLFHDAIVTIGVFALFGFPFDLTVLAAILALIGYSLNDTIVVYDR 304

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           +R+N +     IS R  ID S+ ETL R++ T     + VL M   GG  +  F+  +  
Sbjct: 305 IRENFRR-VRGISPRQTIDLSLTETLRRTIMTISTVLLVVLAMLFLGGDGLFWFSAALFI 363

Query: 804 GIVVAASSSIFIAAPILLFIYDWR 827
           G++    SS +IA+ I L +   R
Sbjct: 364 GLLAGTYSSTYIASSIPLAMGLSR 387


>gi|315124573|ref|YP_004066577.1| protein export protein SecF [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315018295|gb|ADT66388.1| protein export protein SecF [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 302

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 155/285 (54%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR RF  + +S +    SI LL+  GL YGIDF GG  + +       ++ +R  LE
Sbjct: 10  YDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                        G    +       G +   +  +      + +      ++  ++VGP
Sbjct: 70  KQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ + +S IA+LIYI +RF+W FAL AI + I D+  TLG  +LF I+ N
Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVLT++GYS+ND ++++DR+R+ +K  +       +I++S++ TL R+V TS   
Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSRTVLTSGLT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +V+ +  +GG +I  F++ +  GI+    SSIF+A+P LL+  
Sbjct: 247 LATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPTLLWFK 291


>gi|254293772|ref|YP_003059795.1| protein-export membrane protein SecF [Hirschia baltica ATCC 49814]
 gi|254042303|gb|ACT59098.1| protein-export membrane protein SecF [Hirschia baltica ATCC 49814]
          Length = 327

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 162/302 (53%), Gaps = 13/302 (4%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM+ RF    +S++  I SI ++ T GLN+GIDF GG+ + +  +  VD+  +R  
Sbjct: 10  PKIGFMKLRFGAFALSLVLIIASIAMVATRGLNFGIDFVGGVVIEIETSTKVDIGEIRDA 69

Query: 598 LESLQIGDISFQNFDGE------------KNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           L  L +  +                                   A       +   + + 
Sbjct: 70  LSELDLDGVEVTEIKDNLVAEETGTTIALIKTKAPDAEGEAVEAAVQATASGILSALKDK 129

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  E VGPK+S EL++ GI+ ++++   ML+YIW RF+W F++GA+  LI D+ 
Sbjct: 130 FGDIEERRKEAVGPKVSGELLQDGIMALVVALGLMLLYIWFRFQWQFSIGAVLALIHDVI 189

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T+G FA+   EFNL+ +AA+LT++GYS+ND VVVYDR+R+ M+ Y   +S  D+ID SI
Sbjct: 190 LTIGMFAVTQFEFNLSTIAALLTIVGYSMNDTVVVYDRVREEMRRY-KKMSDTDVIDMSI 248

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           N TL R++ TS    +++  + + GG V+  F+  M +G+ +   SSIFIA+ ILL    
Sbjct: 249 NRTLSRTLLTSGTTLLALFSIFLLGGEVLRGFSFAMIWGVFIGTYSSIFIASAILLHTGL 308

Query: 826 WR 827
            R
Sbjct: 309 RR 310


>gi|37527758|ref|NP_931103.1| preprotein translocase subunit SecD [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787194|emb|CAE16274.1| Protein-export membrane protein SecD [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 615

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 164/537 (30%), Positives = 280/537 (52%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L +   +          + LGLDLRGG H ++EVD +  +    +  
Sbjct: 100 VVALNLAPATPTWLSKVGAE---------PMKLGLDLRGGVHFLMEVDMETALGKLQEQN 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LR+ L+++GI   + R+I N  + + F D + +    + +T   +            
Sbjct: 151 IDGLRTDLREKGIPYSTARKIDNYGVEIRFRDEKARSEAENYLTGRHR-----------D 199

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +    +   +  V+S     +  S+A++Q++ I+R R++Q+G++E  +QR G+ RI+++
Sbjct: 200 LVFSIGSNNTLKAVMSDERQREARSYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVE 259

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V           G            DGN  ++  +V
Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTGIDSTAATSGRVPGDSEVKSTRDGNPVVLYKRV 319

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302
            ++G H+  +  + D     P V IS D  G       T+DN+GKP+A +          
Sbjct: 320 ILTGDHITDSIPDTDEYG-NPQVSISLDSAGGTAMSNFTKDNVGKPMATLFVEYKDSGKK 378

Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                        +      Q       +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 379 DANGRSVLVKHEEVINIANIQTRLGNSFRITGLSNATEARQLSLLLRAGALIAPIQIVEE 438

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG  +I +G  A + GL+  +LFM++ Y K+G++A  ++  N++L + ++SLL 
Sbjct: 439 RTIGPTLGLQNIEQGLEACLWGLIASILFMVIYYRKFGVIASSALLANLVLIVGIMSLLP 498

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  ++V  ++  G+  A+S+I D+N+
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANL 558

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  V+L+  G G+++GFAIT  + +  SMFTAI   R ++  +   K++K + I
Sbjct: 559 TTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRGIVNLLYGGKRIKKLSI 615



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 96/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  S+ +      N    +  L       G S A       +  +   
Sbjct: 369 FVEYKDSGKKDANGRSVLVKHEEVINIANIQTRLGNSFRITGLSNATEARQLSLLLRAGA 428

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++ I ++  F + A + L+ ++
Sbjct: 429 LIAPIQIVEERTIGPTLGLQNIEQGLEACLWGLIASILFMVIYYR-KFGVIASSALLANL 487

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      + +  I +
Sbjct: 488 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHE 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    +  ++   I+ + +   G   I  FAI  + G+  +  ++I     I+  +
Sbjct: 545 GYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRGIVNLL 604

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 605 YGGKRIKK 612



 Score = 38.5 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 27/150 (18%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++      IGLL ALPN   +                            +++ 
Sbjct: 4   RYPLWKYLMLIAAILIGLLYALPNLYGEDPA-------------------------VQIT 38

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD-KVTLFLQ 120
               +    +    ++ + L+K  I   S+      I   F +S  +    +  V+    
Sbjct: 39  GARGIAAS-EQTLVQIHNVLEKNQIASKSIALENGAILARFDNSDIQLRAREALVSTLGD 97

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
                LN+ P     ++    E   +    
Sbjct: 98  QYVVALNLAPATPTWLSKVGAEPMKLGLDL 127


>gi|258626960|ref|ZP_05721762.1| protein-export membrane protein SecD [Vibrio mimicus VM603]
 gi|258580784|gb|EEW05731.1| protein-export membrane protein SecD [Vibrio mimicus VM603]
          Length = 617

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 153/523 (29%), Positives = 276/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEESFRSDLRDEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+R + + + ++  D+         +    +        D       T     +   
Sbjct: 164 RYRSIRPLSDAVEVTLRDAEQLSQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 395 INQATIQSALGRNFRITGIDSPSEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRINKLSI 617



 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPSEAHNLALLLRAGA 430

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLM 606

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 607 YGGKRINK 614



 Score = 39.3 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++      I  L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVMFTIAIAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D + S L K  +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTSALDKAHLSKKSIALENGSILVRFNDTDTQISARDIISEAL 95


>gi|51102917|gb|AAT96066.1| SecF [Pseudomonas viridiflava]
          Length = 303

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 94/288 (32%), Positives = 161/288 (55%), Gaps = 5/288 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR
Sbjct: 1   MKRTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVR 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L      +   Q+F    + LVR+  +      Q         + +     + ++  E
Sbjct: 61  QELVQAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKSGADNPAVVKRVE 116

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F 
Sbjct: 117 FVGPQVGEELRDQGGIGMLLALGGVLIYLAFRFQWKFAVGAIVSLIHDVVVTMGILSFFQ 176

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ T
Sbjct: 177 ITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTMAT 235

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           S++  ++++ + V+GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 236 SISTLLAIVALWVFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|197363359|ref|YP_002142996.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197094836|emb|CAR60369.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 576

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 294/524 (56%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 65  NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 124

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS+ ++              + L    +  ++ + +  ++  
Sbjct: 125 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 173

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 174 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 233

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 234 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 293

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 294 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 352

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 353 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 412

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 413 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 472

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 473 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 532

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 533 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 576



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 401 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 459

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  I++           
Sbjct: 460 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 516

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  + 
Sbjct: 517 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 570


>gi|300703079|ref|YP_003744681.1| sec/yeg protein translocase auxillary subunit [Ralstonia
           solanacearum CFBP2957]
 gi|299070742|emb|CBJ42037.1| SecYEG protein translocase auxillary subunit [Ralstonia
           solanacearum CFBP2957]
          Length = 322

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 164/305 (53%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S L  I ++  LF +GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIRRDIPFMKHALAFNAVSFLTFIAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  VR+++E L   D   QNF   ++ ++RL  + G      A     + V   +T   P
Sbjct: 61  LPKVRADVEKLGYADAQVQNFGTSRDVMIRLPLKNGPDGKPIASAVQSQQVMSALTADTP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G++ ++   I ++IY+ IRF+W FA+  I   + DI   
Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  + Y   +S  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MSTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + VL M V+GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|323524786|ref|YP_004226939.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1001]
 gi|323381788|gb|ADX53879.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1001]
          Length = 316

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 154/298 (51%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS+L  + ++  L   GL+  ++F GG  + V       
Sbjct: 1   MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLVHRGLHLSVEFTGGTVIEVQYPGAAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   ++ L+RL  + G + AQ    + V   +    P   
Sbjct: 61  LDPVRNTLNKLGYADAQVQNFGTSRDVLIRLPLKHGLTSAQQS--DQVMGALKTDTPQVQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +    + ++IY+  RF+W +A+  +   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVVGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVIEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ T     + VL M ++GG  +  FA+ +  GI+    SS+F+AA + ++    R 
Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKRE 295


>gi|270263543|ref|ZP_06191812.1| hypothetical protein SOD_e01670 [Serratia odorifera 4Rx13]
 gi|270042427|gb|EFA15522.1| hypothetical protein SOD_e01670 [Serratia odorifera 4Rx13]
          Length = 615

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 167/538 (31%), Positives = 282/538 (52%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    + 
Sbjct: 99  FVVALNLAPATPAWLAMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 149

Query: 73  YSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+++GI   S+R+   N + + F D   ++     +T              +
Sbjct: 150 TMDTLRSELREKGIPYASIRKLDNNGVEVRFRDDAARDQAISYITPR-----------QR 198

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             +L       +   L+   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI++
Sbjct: 199 DLVLSANGANTLKASLTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVV 258

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  N        G            +G   ++  +
Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNTNADATAAANGRVPGDSEVKNTREGQPVVLYKR 318

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T++ D    +P V+IS D  G       T+DNIGKP+A +      +  
Sbjct: 319 VILTGDHITDSTSSTDEYN-QPQVNISLDSAGGTSMSNFTKDNIGKPMATLFVEYKDSGK 377

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                Q+      +I+G      A  L+ +LRAG+L   + IVE
Sbjct: 378 KDANGRAILVKQEEVINVANIQSRLGNSFRITGIGNPNEARQLSLLLRAGALIAPIQIVE 437

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A + GLV  ++FM+V Y K+G++A  ++  N++L + ++SLL
Sbjct: 438 ERTIGPTLGQQNITQGLEACLWGLVASIVFMVVWYRKFGMIATTALVANLVLIVGVMSLL 497

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE +  +S+  ++  G+  A+S+I D+N
Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSIQQAIHEGYKGAFSSIVDAN 557

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           IT LI  ++L+  G G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 558 ITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 615



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP + ++ I +G+   +   +A ++++ + ++  F + A T L+ ++   +G  +L  
Sbjct: 440 TIGPTLGQQNITQGLEACLWGLVASIVFMVVWYR-KFGMIATTALVANLVLIVGVMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +K      S +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSIQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+  +  ++I     I+  +Y  +  N 
Sbjct: 556 ANITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINK 612



 Score = 42.4 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 28/114 (24%), Gaps = 26/114 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  +GLL ALPN   +                          +     
Sbjct: 4   RYPLWKYLMLIVVIIVGLLYALPNLYGEDPA---------------------VQIT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                   L      L      + I   S+      I   F D   +    + +
Sbjct: 42  GVAASETTLDQVRTVLEK----DNIASKSIALENGAILARFKDPDVQLRAREAL 91


>gi|51102954|gb|AAT96102.1| SecF [Pseudomonas viridiflava]
          Length = 303

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 160/288 (55%), Gaps = 5/288 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR
Sbjct: 1   MKRTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVR 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L      +   Q+F    + LVR+  +      Q         + +     + ++  E
Sbjct: 61  QELVEAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKSGADNPAVVKRVE 116

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F 
Sbjct: 117 FVGPQVGEELRDQGGIGMLLALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQ 176

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ T
Sbjct: 177 ITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTMAT 235

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           S++  ++++ +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 236 SISTLLAIVALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|325981736|ref|YP_004294138.1| protein-export membrane protein SecD [Nitrosomonas sp. AL212]
 gi|325531255|gb|ADZ25976.1| protein-export membrane protein SecD [Nitrosomonas sp. AL212]
          Length = 696

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 164/505 (32%), Positives = 282/505 (55%), Gaps = 20/505 (3%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N LP S    + + +    + LGLDLRGG H +L VD +  +   L  YS ++RS
Sbjct: 99  YIIALNLLPNSPR--WLTNLGALPMYLGLDLRGGVHFMLAVDMEGALEKSLDRYSIDIRS 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+++ I    + +   K+ + F D   +     ++             D   N+     
Sbjct: 157 TLREKRISYTGLEKQGKKLVIKFRDIESRSKAEAELKSNF--------EDFTLNIEDVDN 208

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +   +      ++   A+ Q++  +R R++++G++E  IQ+ G+ R+++QLPG QD 
Sbjct: 209 RYHLIAAIKPEVQIRMQDSAVMQNITTLRNRVNELGVAEPIIQKAGADRVIVQLPGVQDT 268

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-----RDSDGNQYLVEDKVEISGIHL 254
           ++ + +LG TA +    V   +     + G   +     ++  G+  LV+ +V ++G  +
Sbjct: 269 AKAKDILGRTATLEVRMVDDEHDLDAALRGRVPVGTELHQERGGSPILVKKQVLLTGERI 328

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVINQ 310
             A   F  K ++P V I+ D  G+R F ++TR+N+G+ +           V+TAPVI +
Sbjct: 329 TDAQPGF-DKDNQPAVHINLDNHGSRIFKQLTRENVGRRMAILLIEKNTAEVVTAPVIRE 387

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            I  G+ QISG  T   A  +A +LRAG+L   ++I+EER +G  LG+D+I +G  + + 
Sbjct: 388 EIGGGRVQISGRMTSLEARDVALLLRAGALAAPMDIIEERTIGPSLGADNIARGFNSTLY 447

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
           G + + +F++V Y  +G+++  ++  N++L + LLS++ ATLTLP +A + L +G+A+D+
Sbjct: 448 GFLAVAIFIMVYYTAFGVISAIALGFNLLLLVGLLSIMQATLTLPGMAALALTVGMAIDA 507

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
           N+L+NERIR+E R   S   ++  G+ RA+ TI DSNIT LIA + LF FG G V+GFA+
Sbjct: 508 NVLINERIRDELRAGASPQLAIHAGYERAFGTILDSNITTLIAGIALFAFGSGPVKGFAV 567

Query: 491 TMGLSILISMFTAISIVRAMMIFII 515
            + L IL S+FTA+ + RAM+ F+ 
Sbjct: 568 VLCLGILTSVFTAVFVSRAMVNFMY 592



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 87/208 (41%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G   +       +  +   +     I     +GP +  + I +G    +   +A+ 
Sbjct: 394 VQISGRMTSLEARDVALLLRAGALAAPMDIIEERTIGPSLGADNIARGFNSTLYGFLAVA 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I+I + +   F + +   L  ++   +G  ++      L  +AA+   +G +++  V++ 
Sbjct: 454 IFIMVYYT-AFGVISAIALGFNLLLLVGLLSIMQATLTLPGMAALALTVGMAIDANVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      S +  I        G  + +++   I+ + +  +G   +  FA+ +
Sbjct: 513 ERIRDELRA---GASPQLAIHAGYERAFGTILDSNITTLIAGIALFAFGSGPVKGFAVVL 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  +++F++  ++ F+Y    K
Sbjct: 570 CLGILTSVFTAVFVSRAMVNFMYGNLRK 597


>gi|110833364|ref|YP_692223.1| preprotein translocase subunit SecD [Alcanivorax borkumensis SK2]
 gi|110646475|emb|CAL15951.1| Preprotein translocase SecD subunit [Alcanivorax borkumensis SK2]
          Length = 637

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 156/524 (29%), Positives = 270/524 (51%), Gaps = 45/524 (8%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + ++LGLDLRGG H +L+VD D  V   ++ +    +  L+  G+
Sbjct: 115 NLAATTPQWLRDIGASPMNLGLDLRGGVHFLLQVDMDSVVKSRMEAWEGTAKLTLRDAGV 174

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +      +  +F D    +     +   L  +  +                 I + 
Sbjct: 175 RYREVSVDGTTLIATFGDQVAADAARAPLRQALDKLAMQ----------PAGDSPRIVMT 224

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L++  + ++  +A++Q+   + +R++++G++E+ +QR G+ RI++QLPG QD +  R++L
Sbjct: 225 LNETALKEMQDYAVDQNRTALNKRVNELGVAEAVVQRQGADRIVVQLPGIQDAATARRIL 284

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDSDGNQYLVEDKVEISGIHLNGATA 259
           G TA + F  V  + S      G+          +  +G    +      +G  +  A  
Sbjct: 285 GRTATLEFRLVDNSVSSARLRSGMAPPGLEFFPFKGQEGRIVALNKSSIATGDQVIDAKM 344

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------A 295
            FD +  +P V+++ D  GARR   VT  N+G P+                         
Sbjct: 345 GFDQQNGQPEVNVTLDSDGARRMQRVTGKNVGNPMGVLFIETKTDVKKVIDEDGNSVEQM 404

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                + +      Q+    + +I+G      A  LA +LRAGSL   ++IVEER VG  
Sbjct: 405 TSSTDKYVINVATIQSTLGSRFRITGLDNPAEASELALLLRAGSLAAPVSIVEERTVGPS 464

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTL 414
           LG+++I  G  ++  GL L++ FM++ Y  +GL+A+ ++  N+++ + ++SL+  AT+TL
Sbjct: 465 LGAENIEAGLKSMALGLALVLAFMVLWYKVFGLIANVALLGNLVIIVGVMSLIPGATMTL 524

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL +G+AVD+N+L+ ERIRE+ R+  S   +++ G++RA++TI D+NIT LI  
Sbjct: 525 PGIAGIVLTVGMAVDANVLIFERIREDLRRGLSPRQAIEEGYARAFTTILDANITTLIVA 584

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           V+LF  G G+V+GFA+T+ + IL SMFTAI   RAM   I    
Sbjct: 585 VILFAAGTGSVQGFAVTLFIGILTSMFTAIIGTRAMAEMIYGRG 628



 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 103/258 (39%), Gaps = 6/258 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +  G + +    +    +    +++E +      +          +  +++         
Sbjct: 377 NPMGVLFIETKTDVKKVIDEDGNSVEQMTSSTDKYVINVATIQSTLGSRFRITGLDNPAE 436

Query: 634 VLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             E  +  +   +    +I     VGP +  E I  G+  + +    +L ++ + +K  F
Sbjct: 437 ASELALLLRAGSLAAPVSIVEERTVGPSLGAENIEAGLKSMALGLALVLAFMVLWYKV-F 495

Query: 693 ALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            L A   L+ ++   +G  +L  G    L  +A ++  +G +V+  V++++R+R++++  
Sbjct: 496 GLIANVALLGNLVIIVGVMSLIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREDLR-- 553

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
              +S R  I++         +  ++   I  + +   G   +  FA+ +  GI+ +  +
Sbjct: 554 -RGLSPRQAIEEGYARAFTTILDANITTLIVAVILFAAGTGSVQGFAVTLFIGILTSMFT 612

Query: 812 SIFIAAPILLFIYDWRAK 829
           +I     +   IY   A+
Sbjct: 613 AIIGTRAMAEMIYGRGAR 630


>gi|309781304|ref|ZP_07676040.1| protein-export membrane protein SecF [Ralstonia sp. 5_7_47FAA]
 gi|308919717|gb|EFP65378.1| protein-export membrane protein SecF [Ralstonia sp. 5_7_47FAA]
          Length = 323

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 162/305 (53%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S L  I ++  LF  GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIRRDIPFMKHALILNALSFLTFIAAVFFLFHKGLHLSVEFTGGTVMEVAYTQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  +R ++E L   D   QNF   ++ ++RL  + G      A     + V   +  + P
Sbjct: 61  LPKIRGDVEKLGYADAQVQNFGTSRDVMIRLPLKTGPDGKPIASAVQSQQVMTALNAVNP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + +Q  E VGP++ +EL   G++ ++   + ++IY+ IRF+W FA+  +   + D+   
Sbjct: 121 DAKLQRVEFVGPQVGKELATDGLLALLFVVVGIVIYLSIRFEWKFAVAGVIANLHDVVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +A VL ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + V+ M V+GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTIITHGSTEMMVVSMLVFGGPTLHYFAVALTIGILFGIYSSVFVAAALCMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|26987572|ref|NP_742997.1| preprotein translocase subunit SecF [Pseudomonas putida KT2440]
 gi|24982247|gb|AAN66461.1|AE016275_6 protein-export membrane protein SecF [Pseudomonas putida KT2440]
          Length = 302

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 158/287 (55%), Gaps = 5/287 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R     +++L ++ ++   +  GLN+G+DF GG  + +   RP D+  VR+
Sbjct: 1   MKTINFMGVRNVAFAVTVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADVKAVRA 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L      +   Q+F    + LVR+         +                 + ++  E 
Sbjct: 61  ELVESGFNEAVVQSFGATTDLLVRMPGDDPMLGNKVAEALQ----KAGGDNPAKVKRVEF 116

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  TLG  + F I
Sbjct: 117 VGPQVGEELRDQGGIGMLLALGGILIYLAFRFQWKFAVGAIVSLIHDVVVTLGILSFFQI 176

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     S  + I+ S  +TL R+V TS
Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINVSTTQTLLRTVATS 235

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++  +++  +  +GG  +  F++ +  G++    SSI+IA  +L+++
Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282


>gi|296386925|ref|ZP_06876424.1| RND multidrug efflux transporter MexB [Pseudomonas aeruginosa PAb1]
          Length = 1038

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 184/686 (26%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++P+  P               +      
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +              +  IT++F      +    +V   LQ 
Sbjct: 54  AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++             + S  I+    D +  ++   
Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++G          
Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      A L          +           S   
Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            LS        +A        + +   ++ +                + +G +   V   
Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++S++   +  ++      F V      G   +      M+K       
Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++                  +  
Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q   I+ Q      + +        +++   + +      +   +
Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      LPMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +          + G    + ++G     +  +  PG S            K 
Sbjct: 790  VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W      +  + L
Sbjct: 850  LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L   ++ G+  ++     +LT IG S  + +++ +  ++   L+       +   
Sbjct: 907  GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++    L   V TS+A  + V+P+A+    G     +    +  G+V A   +IF
Sbjct: 964  EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018


>gi|167586181|ref|ZP_02378569.1| preprotein translocase subunit SecF [Burkholderia ubonensis Bu]
          Length = 316

 Score =  211 bits (535), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 93/306 (30%), Positives = 160/306 (52%), Gaps = 6/306 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       +S++  + ++  L   GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLLHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   +N L+RLQ + G + AQ    + V   +    P  T
Sbjct: 61  LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKQGLTSAQQS--DQVMTALKAQSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA+L ++GYSVN+ VV++DR+R+  +     +S +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA-- 828
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGILFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 829 -KNARI 833
            K  ++
Sbjct: 298 IKEKKL 303


>gi|291616518|ref|YP_003519260.1| SecD [Pantoea ananatis LMG 20103]
 gi|291151548|gb|ADD76132.1| SecD [Pantoea ananatis LMG 20103]
          Length = 615

 Score =  211 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 162/524 (30%), Positives = 284/524 (54%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  ++   +  +D LRS L+++ I
Sbjct: 104 NLAPATPRWLTLLAAQPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNADSLRSDLREKNI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++ +I N  + + F D+  ++     ++   Q             ++ ++ +  +  
Sbjct: 164 PYTNVNKIANYGVEIRFRDAASRDAAVKWLSSRHQ-----------DLVINSSGDDALRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            ++   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++
Sbjct: 213 TMTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  +        G            DG   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTSVDPTAAASGRVPGDSEVKDMRDGRPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
              + ++P V+IS D  G       T+DNIGKP+A +      +                
Sbjct: 333 -MDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 391

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  +G  +I 
Sbjct: 392 VINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNIT 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GLV  +LFM++ Y K GL+A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 452 QGLEACLWGLVASILFMVLYYKKVGLIATSALLANLVLIVGIMSLLPGATLTMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  V+L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVVILYAIG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT  + I  SMFT+I   RA++  +   K++K + I
Sbjct: 572 TGSIKGFAITTAIGIATSMFTSIVGTRAIINLMYGGKRIKKLSI 615



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 79/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP + ++ I +G+   +   +A ++++ + +K    L A + L+ ++   +G  +L  
Sbjct: 440 TIGPTMGQQNITQGLEACLWGLVASILFMVLYYK-KVGLIATSALLANLVLIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI  A GI  +  +SI     I+  +Y  +    
Sbjct: 556 ANVTTLIKVVILYAIGTGSIKGFAITTAIGIATSMFTSIVGTRAIINLMYGGKRIKK 612


>gi|327392949|dbj|BAK10371.1| protein-export membrane protein SecD [Pantoea ananatis AJ13355]
          Length = 604

 Score =  211 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 162/524 (30%), Positives = 284/524 (54%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  ++   +  +D LRS L+++ I
Sbjct: 93  NLAPATPRWLTLLAAQPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNADSLRSDLREKNI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++ +I N  + + F D+  ++     ++   Q             ++ ++ +  +  
Sbjct: 153 PYTNVNKIANYGVEIRFRDAASRDAAVKWLSSRHQ-----------DLVINSSGDDALRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            ++   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++
Sbjct: 202 TMTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  +        G            DG   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTSVDPTAAASGRVPGDSEVKDMRDGRPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
              + ++P V+IS D  G       T+DNIGKP+A +      +                
Sbjct: 322 -MDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAILVKQEE 380

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  +G  +I 
Sbjct: 381 VINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNIT 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GLV  +LFM++ Y K GL+A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 441 QGLEACLWGLVASILFMVLYYKKVGLIATSALLANLVLIVGIMSLLPGATLTMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  V+L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVVILYAIG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G+++GFAIT  + I  SMFT+I   RA++  +   K++K + I
Sbjct: 561 TGSIKGFAITTAIGIATSMFTSIVGTRAIINLMYGGKRIKKLSI 604



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 79/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP + ++ I +G+   +   +A ++++ + +K    L A + L+ ++   +G  +L  
Sbjct: 429 TIGPTMGQQNITQGLEACLWGLVASILFMVLYYK-KVGLIATSALLANLVLIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +         V 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI  A GI  +  +SI     I+  +Y  +    
Sbjct: 545 ANVTTLIKVVILYAIGTGSIKGFAITTAIGIATSMFTSIVGTRAIINLMYGGKRIKK 601


>gi|207721606|ref|YP_002252045.1| protein-export membrane [Ralstonia solanacearum MolK2]
 gi|206586767|emb|CAQ17352.1| protein-export membrane [Ralstonia solanacearum MolK2]
          Length = 322

 Score =  211 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 164/305 (53%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S L  I ++  LF +GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIRRDIPFMKHALAFNAVSFLTFIAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  VR+++E L   D   QNF   ++ ++RL  + G      A     + V   +T   P
Sbjct: 61  LPKVRADVEKLGYADAQVQNFGTSRDVMIRLPLKNGPDGKPIASAVQSQQVMSALTADTP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G++ ++   I ++IY+ IRF+W FA+  I   + DI   
Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + VL M V+GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|167571176|ref|ZP_02364050.1| preprotein translocase subunit SecD [Burkholderia oklahomensis
           C6786]
          Length = 620

 Score =  211 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 164/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTLLRDKGIRDGGVNRVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDAAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           ++V G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVVWGFVAIAVFMIAYYMLFGIVSVVGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R   S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRNGASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           GFAI   + IL SMF+A+   R ++      +K 
Sbjct: 560 GFAIVHCIGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 87/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G   V+   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGFHSVVWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGIVSVVGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   +  FAI    G
Sbjct: 512 REELR---NGASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAIVHCIG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|254225008|ref|ZP_04918622.1| protein-export membrane protein SecD [Vibrio cholerae V51]
 gi|125622395|gb|EAZ50715.1| protein-export membrane protein SecD [Vibrio cholerae V51]
          Length = 617

 Score =  211 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       +     +   
Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 395 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANVALMANL 489

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 606

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 607 YGGKRINK 614



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   +  L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D +   L K  +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDIISEAL 95


>gi|119775325|ref|YP_928065.1| preprotein translocase subunit SecF [Shewanella amazonensis SB2B]
 gi|119767825|gb|ABM00396.1| protein translocase subunit secF [Shewanella amazonensis SB2B]
          Length = 315

 Score =  211 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 174/299 (58%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++    +I F+R       +S +  + S+  L T G+N+G+DF GG  + +  ++PV
Sbjct: 1   MFQILDIKGSINFLRHAAPISILSAILVVGSLVSLATRGINWGLDFTGGTVVEMEFSKPV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+NL    +     QNF   ++ LVRLQ + G        + +V  K TE+ P  
Sbjct: 61  NLETLRNNLTEPLVAGAVVQNFGSSRDVLVRLQVREGVK--SDAQVRVVMAKATELDPEV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           T +  E VGP++ +EL  +G + V+++ I +LIY+  RF+W  A G++  L  D+  TLG
Sbjct: 119 TQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLAAGSVAALAHDVIVTLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++  +EF+LT +A +LT++GYS+ND +VV+DR+R+N        +  ++++ SI +T+
Sbjct: 179 VFSVLQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKG-TPEEVVNNSITQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T+    I+V+ + + GG++I  FA  +  GIVV   SSI++A+ + + +   R 
Sbjct: 238 SRTIITTGTTLITVVALFLKGGTLIHGFATALLLGIVVGTYSSIYVASYLAIRLGINRE 296


>gi|241766128|ref|ZP_04764037.1| protein-export membrane protein SecF [Acidovorax delafieldii 2AN]
 gi|241363832|gb|EER59162.1| protein-export membrane protein SecF [Acidovorax delafieldii 2AN]
          Length = 316

 Score =  211 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 94/303 (31%), Positives = 165/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS +    ++  L T GL+  ++F GG  + V  ++P +
Sbjct: 1   MEFFRIRKDIPFMKHALVFNAISFITFALAVFFLLTRGLHLSVEFTGGTVMEVAYSQPAE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ VR  + S+   D+  QNF   ++ ++RL  Q G + AQ    E V   +    P  T
Sbjct: 61  LAKVRETVASMGYPDVQVQNFGTARDVMIRLPVQKGVTSAQQS--EQVIAALKAGDPAVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL+  G++ + +  + +++Y+  RF+W F + AI   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGEELVHGGLMALAMVVVGIVVYLAFRFEWKFGVAAIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +    VL M  +GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297

Query: 831 ARI 833
            ++
Sbjct: 298 VKV 300


>gi|153001320|ref|YP_001367001.1| preprotein translocase subunit SecF [Shewanella baltica OS185]
 gi|151365938|gb|ABS08938.1| protein-export membrane protein SecF [Shewanella baltica OS185]
          Length = 315

 Score =  211 bits (535), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 165/291 (56%), Gaps = 3/291 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + F+R       +S +  + S+  L T+G+N+G+DF GG  + +    PVDL+ +R  
Sbjct: 9   HTVNFLRHALPISIMSAVLVLGSLVSLATNGINWGLDFTGGTVVEMEFTNPVDLNALRVQ 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +        QNF   ++ LVRLQ + G        ++ V +   ++ P    +  E V
Sbjct: 69  LTTPDSEGAIVQNFGSSRDVLVRLQVKEGVRSDVQ--VKSVMEAAQKVDPQVQQKRVEFV 126

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++ +EL  +G + V+++ I ++IY+  RF+W  A G++  L  D+  TLG F++F +E
Sbjct: 127 GPQVGKELAEQGALAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSVFQLE 186

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +A +LT++GYS+ND +VV+DR+R+N      S    ++++ SI +T+ R++ T+ 
Sbjct: 187 FDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKS-DPEEVVNTSITQTMSRTIITTG 245

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 246 TTLVVVVALFLKGGTMIHGFATALLMGIFVGTYSSIYVASFLAIKLGINRE 296


>gi|241664133|ref|YP_002982493.1| preprotein translocase subunit SecF [Ralstonia pickettii 12D]
 gi|240866160|gb|ACS63821.1| protein-export membrane protein SecF [Ralstonia pickettii 12D]
          Length = 323

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 90/305 (29%), Positives = 162/305 (53%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S L  I ++  LF  GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIRRDIPFMKHALILNALSFLTFIAAVFFLFHKGLHLSVEFTGGTVMEVAYTQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  +R ++E L   D   QNF   ++ ++RL  + G      A     + V   +  + P
Sbjct: 61  LPKIRGDVEKLGYADAQVQNFGTSRDVMIRLPLKTGPDGKPIASAVQSQQVMTALNAVNP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            + +Q  E VGP++ +EL   G++ ++   + ++IY+ IRF+W FA+  +   + D+   
Sbjct: 121 DAKLQRVEFVGPQVGKELATDGLLALLFVVVGIVIYLSIRFEWKFAVAGVIANLHDVVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +A VL ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + V+ M V+GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTIITHGSTEMMVVSMLVFGGPTLHYFAVALTIGILFGIYSSVFVAAALCMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|167645301|ref|YP_001682964.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Caulobacter
           sp. K31]
 gi|167347731|gb|ABZ70466.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Caulobacter sp. K31]
          Length = 1047

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 72/687 (10%), Positives = 186/687 (27%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           + ++P+  P          +     +     
Sbjct: 8   RPIFAWVIAIVIMLAGALAI-----RTLPVAQYPAIAPP---------QVAVSAMYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    +        +        +TL+F      +    +V   LQ 
Sbjct: 54  AKTLEDSVTQVIEQKMKGIDGLDYMSSTSDSTGAATVTLTFKAGTDIDIAQVQVQNKLQT 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + ++  L         +++     D   + + + +  I     D +   +   
Sbjct: 114 ATALLPQEVQQQGLTVAKSARNFLLVIGLYSDNPKTTSNDLTDYIASNIQDPLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T + +S      N        G            
Sbjct: 174 DVQLFGAQ-YAMRIWLDPNKLASYSLTPSDVSAAIRAQNAQVSAGQLGGTPNLPGTALNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I  +  G    +      +           
Sbjct: 233 TITAQSRL-------------QTPEEFENIILKNSQGGAIVYMRDVARVEMGAESYSAAA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +        L          IV   +      S   
Sbjct: 280 KYNGKPSGGLAIKLAPGANALDTAKAVKAQVDELAKNFPSEYKYIVPYDSTPFVEQSIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  L+   ++ + ++ T  +L++ G ++   ++ G+V
Sbjct: 340 VVKTLMEAIVLVFIVMFLFLQNWRATLIPTIAVPVVLLGTFGVLAMFGYSINTLTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +     +     +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPKEATRKSMNEITGALIGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSIDINP 527
           GG      R F+IT+  ++++S+  A+ +  A+   +++                 + + 
Sbjct: 460 GGSQGVIYRQFSITIVSAMMLSVVVALVLTPALCATMLKPIAKGHMVAETGFFGWFNRSF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   + +     ++  W    + +     +  +         + +G +   V    
Sbjct: 520 NDVSGRYQNSVRGILGKSVRWMAIYAAIIVAMGLLFVRLPSAFLPEEDQGFMLTLVQLPP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     L+ ++   +  +    +  F V      G           +K        
Sbjct: 580 GATEERTLGVLDQVRSHFMENEKEAVQSVFTVNGFSFSGPGQNAGLAFIRLKNFDERKSA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
              +            ++    +  ++
Sbjct: 640 DLKVPALAGRAMGKFAQIRDAMVFAIV 666



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 82/197 (41%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    ++ + K            ++     +   E+++  +  +++  I M +++ 
Sbjct: 301 DTAKAVKAQVDELAKNFPSEYKYIVPYDSTPFVEQSIHEVVKTLMEAIVLVFIVMFLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L     + + +  T G  A+FG   N   +  ++  IG  V+D +VV + + 
Sbjct: 361 ---NWRATLIPTIAVPVVLLGTFGVLAMFGYSINTLTMFGLVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMA 802
               +    +S ++   KS+NE  G  +  ++      +PMA +GG   VI   F+I + 
Sbjct: 417 -ERVMSEEGLSPKEATRKSMNEITGALIGIALVLSAVFVPMAFFGGSQGVIYRQFSITIV 475

Query: 803 FGIVVAASSSIFIAAPI 819
             ++++   ++ +   +
Sbjct: 476 SAMMLSVVVALVLTPAL 492



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 56/147 (38%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + L I   L    L G+  ++     +LT +G +  + +++ +  ++  
Sbjct: 892  SWTIPLSVIMVIPLGIVGALLATTLRGLSNDIYFQVGLLTTMGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             +Y  + +  +    ++   L   + TS+A    VLP+A+    G     +    +  G+
Sbjct: 950  -IYLRTGNLVEATLDAVRIRLRPIIMTSLAFIFGVLPLAISNGAGSGSQHAIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +     +IF      + +        R
Sbjct: 1009 LSGTILAIFFVPLFFVLVERIFKAKLR 1035


>gi|121729729|ref|ZP_01682170.1| protein-export membrane protein SecD [Vibrio cholerae V52]
 gi|147675510|ref|YP_001216228.1| preprotein translocase subunit SecD [Vibrio cholerae O395]
 gi|153802812|ref|ZP_01957398.1| protein-export membrane protein SecD [Vibrio cholerae MZO-3]
 gi|153829405|ref|ZP_01982072.1| protein-export membrane protein SecD [Vibrio cholerae 623-39]
 gi|229513118|ref|ZP_04402584.1| protein-export membrane protein SecD [Vibrio cholerae TMA 21]
 gi|229530127|ref|ZP_04419517.1| protein-export membrane protein SecD [Vibrio cholerae 12129(1)]
 gi|254285461|ref|ZP_04960425.1| protein-export membrane protein SecD [Vibrio cholerae AM-19226]
 gi|121628546|gb|EAX61029.1| protein-export membrane protein SecD [Vibrio cholerae V52]
 gi|124121637|gb|EAY40380.1| protein-export membrane protein SecD [Vibrio cholerae MZO-3]
 gi|146317393|gb|ABQ21932.1| protein-export membrane protein SecD [Vibrio cholerae O395]
 gi|148875125|gb|EDL73260.1| protein-export membrane protein SecD [Vibrio cholerae 623-39]
 gi|150424323|gb|EDN16260.1| protein-export membrane protein SecD [Vibrio cholerae AM-19226]
 gi|227012567|gb|ACP08777.1| protein-export membrane protein SecD [Vibrio cholerae O395]
 gi|229333901|gb|EEN99387.1| protein-export membrane protein SecD [Vibrio cholerae 12129(1)]
 gi|229350011|gb|EEO14965.1| protein-export membrane protein SecD [Vibrio cholerae TMA 21]
          Length = 617

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       +     +   
Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 395 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 606

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 607 YGGKRINK 614



 Score = 39.7 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   +  L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D +   L K  +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDIISEAL 95


>gi|261252141|ref|ZP_05944714.1| protein-export membrane protein SecD [Vibrio orientalis CIP 102891]
 gi|260935532|gb|EEX91521.1| protein-export membrane protein SecD [Vibrio orientalis CIP 102891]
          Length = 607

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 154/524 (29%), Positives = 276/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L++E I
Sbjct: 93  NLAPATPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREEKI 152

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   ++         +           + D       +     I+ 
Sbjct: 153 RYRAIRPAGKEGVEVLLRNAEQLAEAERILEKN--------HPDMLFTTSDSDGRFSITA 204

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 205 TFTEQRLTEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264

Query: 206 LGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G    +D DG   +++ +V + G  +    ++
Sbjct: 265 LGATATLEFREVDSKADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILGGQSITD-ASS 323

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    +R NIGK +A V                       
Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMAAFSRQNIGKLMATVFAEYKDSGRRTPEGRVILNKHEE 383

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A++ G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 444 MGIQAMIWGMVAVMLFTLLYYRKFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 503

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + IL SMFTAI   R ++      K++  + I
Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLAYGGKRINKLSI 607



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 91/213 (42%), Gaps = 5/213 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI  +I   +A
Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQAMIWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F + A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMLFTLLYYR-KFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   I  FA
Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++ GI+ +  ++I     I+   Y  +  N 
Sbjct: 572 VTLSIGILTSMFTAIVGTRCIVNLAYGGKRINK 604


>gi|254479844|ref|ZP_05093092.1| protein-export membrane protein SecF [marine gamma proteobacterium
           HTCC2148]
 gi|214039406|gb|EEB80065.1| protein-export membrane protein SecF [marine gamma proteobacterium
           HTCC2148]
          Length = 304

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 94/292 (32%), Positives = 161/292 (55%), Gaps = 5/292 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R   +  S +    SI  L T  LN+G+DF GG  + V  +   DL+ +R 
Sbjct: 1   MKIIDFMGQRKMALVFSAILLAISIGSLATKQLNWGLDFTGGTLVEVHYSETADLTAIRK 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +         +F  +K+ L+RL     DS        ++            ++  E 
Sbjct: 61  TLGAEGYAGAIVVSFGTDKDVLIRLPKGYSDSEGAQ----LLAGLQRAYSGNVELRRIEF 116

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +G + ++++   +++YI  RF+  FA+GA+  L+ D+   LGFF++ G+
Sbjct: 117 VGPQVGDELREQGGLAMLLALGLVMLYIAFRFQLKFAVGAVVALVHDVLVVLGFFSVTGV 176

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EF+LT +AA+L +IGYS+ND +VV DR+R+N +    +    ++I+ S+ ETLGR++ TS
Sbjct: 177 EFDLTVLAALLAVIGYSLNDTIVVSDRIRENFRKLRKT-DPVEVINISLTETLGRTLVTS 235

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   + ++ +AV+GG +I +FAI +  G+ +   SSI++AA  LL +   + 
Sbjct: 236 LTTMLVLVALAVFGGEMINAFAIALLVGVFIGTYSSIYVAANALLMMGVSKE 287


>gi|167564030|ref|ZP_02356946.1| preprotein translocase subunit SecD [Burkholderia oklahomensis
           EO147]
          Length = 618

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 164/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTLLRDKGIRDGGVNRVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDAAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           ++V G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVVWGFVAIAVFMIAYYMLFGIVSVVGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R   S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRNGASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           GFAI   + IL SMF+A+   R ++      +K 
Sbjct: 560 GFAIVHCIGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 87/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G   V+   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGFHSVVWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGIVSVVGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   +  FAI    G
Sbjct: 512 REELR---NGASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVRGFAIVHCIG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|217972750|ref|YP_002357501.1| preprotein translocase subunit SecF [Shewanella baltica OS223]
 gi|217497885|gb|ACK46078.1| protein-export membrane protein SecF [Shewanella baltica OS223]
          Length = 315

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 165/291 (56%), Gaps = 3/291 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + F+R       +S +  + S+  L T+G+N+G+DF GG  + +    PVDL+ +R  
Sbjct: 9   HTVNFLRHALPISIMSAVLVLGSLVSLATNGINWGLDFTGGTVVEMEFTNPVDLNALRVQ 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +        QNF   ++ LVRLQ + G        ++ V +   ++ P    +  E V
Sbjct: 69  LTTPDSEGAIVQNFGSSRDVLVRLQVKEGVKSDVQ--VKSVMEAAQKVDPQVQQKRVEFV 126

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++ +EL  +G + V+++ I ++IY+  RF+W  A G++  L  D+  TLG F++F +E
Sbjct: 127 GPQVGKELAEQGGLAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSVFQLE 186

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +A +LT++GYS+ND +VV+DR+R+N      S    ++++ SI +T+ R++ T+ 
Sbjct: 187 FDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKMRKS-DPEEVVNVSITQTMSRTIITTG 245

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 246 TTLVVVVALFLKGGTMIHGFATALLMGIFVGTYSSIYVASFLAIKLGINRE 296


>gi|83719918|ref|YP_441823.1| preprotein translocase subunit SecD [Burkholderia thailandensis
           E264]
 gi|83653743|gb|ABC37806.1| protein-export membrane protein SecD [Burkholderia thailandensis
           E264]
          Length = 673

 Score =  210 bits (534), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 164/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 IVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 160 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPG---- 215

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 216 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQVPVLLKKQVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 604



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 608



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 38/120 (31%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +  S   K  + LG D        L   
Sbjct: 3   RYPIWKYVVMVVALAIGFLYTLPNFFGEAPAVQVSS--GKATVKLGAD-------TL-AQ 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +  +            + +  + +   +       I +   D+  +  + D +   L  
Sbjct: 53  VEAALKA----------NQVAADDVTFDNSSA-NATIRVRLKDTDTQLRVKDMLQKTLNA 101


>gi|290474703|ref|YP_003467583.1| preprotein translocase auxillary membrane protein [Xenorhabdus
           bovienii SS-2004]
 gi|289174016|emb|CBJ80803.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Xenorhabdus bovienii SS-2004]
          Length = 604

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 168/537 (31%), Positives = 289/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L +   +          + LGLDLRGG H ++EVD +  ++   +  
Sbjct: 89  VVALNLAPATPLWLSKVGAE---------PMKLGLDLRGGVHFLMEVDMETALSKLQEQN 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LRS L+ +GI   S+R++ N  + + F D+  +               S L    + 
Sbjct: 140 IDSLRSELRDQGILYSSVRKLDNYGVEVRFRDNDARSKA-----------ESYLEPRHRD 188

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +  T     + +V+S + + +  ++A++Q++ I+R R++Q+G++E  +QR G+ RI+++
Sbjct: 189 LVFSTGANSTLKVVMSDDRLREARTYAVQQNITILRNRVNQLGVAEPLVQRQGADRIVVE 248

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N  +   + G            D N  ++  +V
Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDQSAAVSGRIPGDSELKYTRDSNPVVLYKRV 308

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----- 302
            ++G H+  +T++ D     P V+IS D  G       T+DN+ KP+A +          
Sbjct: 309 ILTGDHITDSTSSTDEYG-NPQVNISLDGAGGSAMSNFTKDNLQKPMATLFVEYKDSGKK 367

Query: 303 -------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                        +      Q+      +I+G   +  A  LA +LRAG+L   + IVEE
Sbjct: 368 DANGRSVLVKQEEVINIATIQSRLGNSFRITGIGNLNEARQLALLLRAGALIAPIQIVEE 427

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG  +I +G  A + GL+  +LFM++ Y K+GL+A  ++  N++L + ++SLL 
Sbjct: 428 RTIGPTLGLQNIKQGLEACLWGLISSILFMVIYYRKFGLIASSALLANLVLIVGVMSLLP 487

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  ++V  ++  G+  A+S+I D+N+
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANL 547

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  V+L+  G G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 548 TTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAVVNLLYGGKRINKLSI 604



 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  S+ +      N    ++ L       G           +  +   
Sbjct: 358 FVEYKDSGKKDANGRSVLVKQEEVINIATIQSRLGNSFRITGIGNLNEARQLALLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I++G+   +   I+ ++++ I ++  F L A + L+ ++
Sbjct: 418 LIAPIQIVEERTIGPTLGLQNIKQGLEACLWGLISSILFMVIYYR-KFGLIASSALLANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      + +  I +
Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    +  ++   I+ + +   G   I  FAI  + G+  +  ++I     ++  +
Sbjct: 534 GYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTSIGVATSMFTAIVGTRAVVNLL 593

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 594 YGGKRINK 601


>gi|284123126|ref|ZP_06386898.1| preprotein translocase subunit SecD [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829301|gb|EFC33705.1| preprotein translocase subunit SecD [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 546

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 180/551 (32%), Positives = 288/551 (52%), Gaps = 44/551 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLP-QSMLDRFPSAM-PKNRISLGLDLRGGSHLVL 58
           M+     + L   +  I   + LP++      +      + P   +SLGLDL+GG HLVL
Sbjct: 1   MKKIRGRLFLVLFLSVISFYLFLPSWPSLYDRVPESVRWLIPPRGVSLGLDLQGGIHLVL 60

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           EV+E+  V   +   +  ++  L  + I    + ++ + + +    S+        V   
Sbjct: 61  EVEEERAVEIAVDRAAKAMQDLLTDKDIAFDKIERV-SNLQVQLDLSKDG-----TVEET 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            + V  +     +    V+   + + + L  + +D++ + AI Q++E IR RIDQ G++E
Sbjct: 115 AELVRDEFPSYFQ----VSLDGRTLVVELLGSEVDRIKNAAINQALETIRNRIDQFGVTE 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD- 237
             +QR G   ++IQLPG +DP R + L+  TA + F  +  +N     +       +   
Sbjct: 171 PLLQRQGRKELVIQLPGVKDPERAKSLIQDTALLEFKMLDEDNQPGLGLPLQVQRSEEST 230

Query: 238 ------------------------------GNQYLVEDKVEISGIHLNGATANFDPKTHK 267
                                            YLV     ++G  L  A  N+   + +
Sbjct: 231 IREKFADKVPEGSEILFESVPDPKGGVPVFSRPYLVRQGAVLTGDVLQDARVNYTEFS-E 289

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V ++FD  GA+ F  +T  N+GK +A+VLDG V +AP IN+ I  G+AQI+GNFT + 
Sbjct: 290 VYVGVTFDSKGAKEFGRITSANVGKFMAIVLDGTVYSAPRINEPILGGRAQITGNFTTDE 349

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  LA +LRAG+LP  +  +++  VG  LG DSI KG    +   V++++FM+  Y   G
Sbjct: 350 ANDLAIVLRAGALPAPMKTIQDLTVGPSLGQDSIEKGLKTTLIAGVIVLIFMVFYYRMSG 409

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           ++AD ++ LN++  L  LS L ATLTLP IAGI+L IG+ VDSNIL+ ERIREE R+ + 
Sbjct: 410 MIADAALVLNLLCLLGALSGLNATLTLPGIAGIILTIGMGVDSNILIFERIREELRQGRP 469

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           V  ++D G+ +A+ TI DS++T LI  + LF FG G ++GFA+T+ L I I++FTA+   
Sbjct: 470 VRLAVDAGYDKAFLTIVDSHVTTLITGLALFLFGTGPIKGFAVTLCLGIAINLFTALIGT 529

Query: 508 RAMMIFIIRYK 518
           + +   I R K
Sbjct: 530 KVVFDLINRRK 540



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 34/180 (18%), Positives = 83/180 (46%), Gaps = 5/180 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                   VGP + ++ I KG+   +I+ + +LI++   ++    + A   L+L++   L
Sbjct: 366 MKTIQDLTVGPSLGQDSIEKGLKTTLIAGVIVLIFMVFYYRMS-GMIADAALVLNLLCLL 424

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G  +       L  +A ++  IG  V+  +++++R+R+ ++        R  +D   ++ 
Sbjct: 425 GALSGLNATLTLPGIAGIILTIGMGVDSNILIFERIREELRQ---GRPVRLAVDAGYDKA 481

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               V + +   I+ L + ++G   I  FA+ +  GI +   +++ I   ++  + + R 
Sbjct: 482 FLTIVDSHVTTLITGLALFLFGTGPIKGFAVTLCLGIAINLFTAL-IGTKVVFDLINRRK 540


>gi|215485489|ref|YP_002327920.1| preprotein translocase subunit SecD [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215263561|emb|CAS07891.1| SecYEG protein translocase auxillary subunit SecF [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 615

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 291/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +    ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTRESQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++ +      N    ++ L       G +         +  +   
Sbjct: 369 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGA 428

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++
Sbjct: 429 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANL 487

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+
Sbjct: 488 ILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDE 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +
Sbjct: 545 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 604

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 605 YGGKRVKK 612


>gi|119775326|ref|YP_928066.1| preprotein translocase subunit SecD [Shewanella amazonensis SB2B]
 gi|119767826|gb|ABM00397.1| protein-export membrane protein SecD [Shewanella amazonensis SB2B]
          Length = 616

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 162/522 (31%), Positives = 277/522 (53%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + RS L++E I
Sbjct: 104 NLAPATPEWLESVGGSPMKLGLDLRGGVHFLMEVDMSEAIRKMEEAKIADFRSQLREERI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +    I + F D+         +             D   + + +     +  V
Sbjct: 164 RYAGVHRTVRGIEIKFRDAETLSQAERFLKSRGN--------DMVFSDISSGDNVVLLAV 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+  + Q+   A+ Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 MSEAYLKQIKEEALLQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V                G    +  +G   +++ +V ++G H+ GA  +F
Sbjct: 276 GATASIEFHMVDEKADVAAAANGRVPAGSELYQRREGGPVVLKKEVMLTGDHITGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA---------------- 305
           D  + +P V I  D  G   F  VT+DNIGKP+A +      +                 
Sbjct: 336 DEYS-RPQVAIQLDAKGGEIFSNVTKDNIGKPMATLFIEYKDSGERNPDGSVKMRKIEEV 394

Query: 306 -PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
             V       G+  +    T   +  LA +LRAG+L   ++IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLTHSESQNLALLLRAGALIAPVSIVEERTIGPSLGAENIENG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+V+++ FM+V Y  +G++A+ ++  N+I+ + ++S++  A LTLP IAG+VL 
Sbjct: 455 LQAMIWGMVVVLAFMLVYYRAFGVIANLALCANLIMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNALSTIADANITTFLTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFTAI   RA++  +   K++K + I
Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRAIVNALWGGKRVKKLSI 616



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 94/242 (38%), Gaps = 6/242 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  R+   S+++  I            +   +              +  +   ++   +
Sbjct: 376 DSGERNPDGSVKMRKIEEVISVATIQARLGRNFVITGLTHSESQNLALLLRAGALIAPVS 435

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     +GP +  E I  G+  +I   + +L ++ + ++  F + A   L  ++   +G 
Sbjct: 436 IVEERTIGPSLGAENIENGLQAMIWGMVVVLAFMLVYYR-AFGVIANLALCANLIMVVGV 494

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +     L
Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAL 551

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828
                 ++  F++ L +   G   +  FA+ +  GI  +  ++I     I+       R 
Sbjct: 552 STIADANITTFLTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNALWGGKRV 611

Query: 829 KN 830
           K 
Sbjct: 612 KK 613



 Score = 38.5 bits (87), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 41/134 (30%), Gaps = 30/134 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  I+  ++  IG   ALPN   +    +                      V+   
Sbjct: 4   KYPMWKNIMVVLVIAIGGFYALPNLFGEDHAVQ----------------------VVATR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF----KENIADKVTL 117
             D           ++ + L  +GIG+        ++ +  A++      KE IA+ +  
Sbjct: 42  GADVTAT----TQSDVSAALTAKGIGIKRSELENGQLLVRVANAEDQLTAKETIAELLGD 97

Query: 118 FLQGVNSKLNVDPK 131
                 +     P+
Sbjct: 98  KYTVALNLAPATPE 111


>gi|153838077|ref|ZP_01990744.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AQ3810]
 gi|260899304|ref|ZP_05907699.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AQ4037]
 gi|149748544|gb|EDM59403.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AQ3810]
 gi|308106623|gb|EFO44163.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AQ4037]
 gi|328472612|gb|EGF43475.1| preprotein translocase subunit SecD [Vibrio parahaemolyticus 10329]
          Length = 618

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 156/524 (29%), Positives = 274/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +   +    +  RS L+   I
Sbjct: 104 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKI 163

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   D          +T          + D       +     +  
Sbjct: 164 RYRAIRPSGKEGVEVLLRDEEQLAEAKRTLTKN--------HPDMNFVESDSNGRYALIA 215

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 216 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275

Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G    +D DG   +++ +V +SG  +    ++
Sbjct: 276 LGATATLEFREVDDKADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILSGASITD-ASS 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    ++ NIGK +A V                       
Sbjct: 335 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRKTPEGKVILTKHEE 394

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 395 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A V G+V ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 455 MGIQACVWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 514

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GAV+GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 TGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRVDKLSI 618



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   +   +A
Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACVWGMVA 466

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 467 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   +  FA
Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 582

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     I+  +Y  + 
Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLLYGGKR 612



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++         L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVFFAIITAALYALPNIYGEDPAIQVTGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D + + L KE +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTTALDKEHLSHKSIALENGSILVRFNDTDTQISARDVISEAL 95


>gi|50120062|ref|YP_049229.1| preprotein translocase subunit SecF [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610588|emb|CAG74033.1| protein-export membrane protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 322

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 168/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR       IS L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YNIEQLNHGRKVYDFMRWDTLAFVISGLLIIISIAIMGVRGFNWGLDFTGGTVIEINLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P+DL V+RS+LE+    +   QNF   ++ +VR+    G S  +    +++         
Sbjct: 65  PIDLDVLRSSLETSGFSEPQVQNFGSSRDVMVRMPPVSG-SENEALGNKVLTVVNDTFQQ 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + +  + +A+LIYI +RF+W  ALGA+  L  D+  T
Sbjct: 124 HATVKRIEFVGPSVGSDLAQAGALALFSALVAILIYIGLRFEWRLALGAVLALGHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF +E +LT +A+++++IGYS+NDK+VV DR+R+N +       + ++ + S+ +
Sbjct: 184 MGLLSLFYVEVDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKIRRGTPY-EITNISLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS      +L + V+GG+++  F++ M  G+++   SSI++++ + L +   R
Sbjct: 243 TLHRTIITSATTLAMILILMVFGGALLHGFSLTMFIGVIIGTISSIYVSSALALKLGMTR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|293392575|ref|ZP_06636895.1| protein-export membrane protein SecD [Serratia odorifera DSM 4582]
 gi|291424977|gb|EFE98186.1| protein-export membrane protein SecD [Serratia odorifera DSM 4582]
          Length = 604

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 167/537 (31%), Positives = 284/537 (52%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 89  VVALNLAPATPRWLTMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LRS L+++GI   S+R++    + + F D+  ++              S L    + 
Sbjct: 140 MDTLRSDLREKGIAYASIRKLDKYGVEVRFRDNAARDQAI-----------SYLTPRQRD 188

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +L +     +   L+   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 189 LVLSSNGNNTLKATLTDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 248

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            +G   ++  +V
Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNTNVDATAAANGRVPGDSEVKDTREGQPIVLYKRV 308

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T+    + ++P V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 309 ILTGDHITDSTS-TMDEYNQPQVNISLDSAGGNAMSNFTKDNIGKPMATLFVEYKDSGKK 367

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 368 DANGRSVLVKQEEVINVANIQSRLGNSFRITGIGNPNEARQLSLLLRAGALIAPIQIVEE 427

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG  +I +G  A + GLV  ++FM+V Y K+G++A  ++  N++L + ++SLL 
Sbjct: 428 RTIGPTLGMQNITQGLEACLWGLVASIVFMVVWYRKFGVIATSALVANLVLIVGVMSLLP 487

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE +  +SV  ++  G+  A+S+I D+NI
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSVQQAIHEGYKGAFSSIIDANI 547

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 548 TTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +A ++++ + ++  F + A + L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNITQGLEACLWGLVASIVFMVVWYR-KFGVIATSALVANLVLIVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +K      S +  I +         + 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSVQQAIHEGYKGAFSSIID 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+  +  ++I     I+  +Y  +  N 
Sbjct: 545 ANITTLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|170691384|ref|ZP_02882549.1| protein-export membrane protein SecF [Burkholderia graminis C4D1M]
 gi|170143589|gb|EDT11752.1| protein-export membrane protein SecF [Burkholderia graminis C4D1M]
          Length = 316

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 155/302 (51%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS+L  + ++  L   GL+  ++F GG  + V       
Sbjct: 1   MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLVHRGLHLSVEFTGGTVIEVQYPGAAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  L  L  GD   QNF   ++ L+RL  + G + AQ    + V   +    P   
Sbjct: 61  LDPVRGTLNKLGYGDAQVQNFGTSRDVLIRLPLKQGLTSAQQS--DQVMSALKTDTPQVQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +    + ++IY+  RF+W +A+  +   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVVGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVIEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R+V T     + VL M ++GG  +  FA+ +  GI+    SS+F+AA + ++    R   
Sbjct: 238 RTVITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|294677319|ref|YP_003577934.1| protein-export membrane protein SecD [Rhodobacter capsulatus SB
           1003]
 gi|6647805|sp|O33517|SECD_RHOCA RecName: Full=Protein-export membrane protein secD
 gi|2252773|gb|AAB62801.1| SecD [Rhodobacter capsulatus SB 1003]
 gi|294476139|gb|ADE85527.1| protein-export membrane protein SecD [Rhodobacter capsulatus SB
           1003]
          Length = 554

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 176/553 (31%), Positives = 286/553 (51%), Gaps = 32/553 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLP-----------------------QSMLDRFPS 37
           ++ + W  ++   +C   L+ A PN                          ++    +P 
Sbjct: 2   LQISLWKRLVILGLCLAALITAAPNMFYARVEGHNDAVSAFEKTGAMTETQEAAKAAWPD 61

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI--- 94
             P   ++LGLDLRGG+HL+ EV   +     +     E+R  L  E   + ++R++   
Sbjct: 62  WAPSALVNLGLDLRGGAHLLAEVHLGEVYKARMDALWPEVRKVLAAERATIGAIRRVPSP 121

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
           + ++ +   +        +        V S   V      +       +   LS+     
Sbjct: 122 EGELRIQIGERAQIARAVEVARTLASPVVSLTGVGQTDYEVT-GEGDTVVFRLSEAEKKA 180

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
                ++QS+EI+R+R+D  G  E TI R G+ RILI++PG      L+ L+GTTAK++F
Sbjct: 181 TDDRTMQQSLEIVRRRVDAAGTREPTIMREGTDRILIEVPGIGSAQELKDLIGTTAKLTF 240

Query: 215 HKVLPNNSKKGFMF----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           H VL   S           +    +  G  +L+++   ++G  L             P V
Sbjct: 241 HPVLSTTSNPNAPVASGNELLPDAERQGLYHLLDEVPVVTGDDLTD-ARPTTDDNGAPAV 299

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
              F+  GAR F + T  +IG+P A+VLDG+V++AP I   I  G   I+G F+IE A  
Sbjct: 300 SFRFNVSGARAFGDYTAGHIGEPFAIVLDGKVISAPTIQAHIAGGSGIITGRFSIEEATD 359

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +LRAG+LP  +  +EER +G +LG+DS+  G  A V G V +V +MI  YG +G  +
Sbjct: 360 LALLLRAGALPAGMTFLEERTIGPELGADSVKAGMVASVIGFVAVVAYMIASYGLFGFFS 419

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++F+N+    A++  +G T+TLP IAGIVL IG +VD+N+L+ ER+REE R  +S   
Sbjct: 420 SVALFINIAFIFAVMGAIGGTMTLPGIAGIVLTIGTSVDANVLIYERMREEIRSGKSPVR 479

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           ++++GF +A S I D+N+T+ +++ +LF  G G VRGFA+T  + I  S+FTAI +VR M
Sbjct: 480 AIELGFDKAMSAIIDANVTSFLSSAILFVLGAGPVRGFAVTTMIGIAASIFTAIWVVRLM 539

Query: 511 MIFIIRYKKMKSI 523
           ++    +++ K+I
Sbjct: 540 IVIWYGWRRPKTI 552



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 88/202 (43%), Gaps = 4/202 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    T      +GP++  + ++ G+V  +I  +A++ Y+   +
Sbjct: 353 SIEEATDLALLLRAGALPAGMTFLEERTIGPELGADSVKAGMVASVIGFVAVVAYMIASY 412

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              F   +   L ++I          G    L  +A ++  IG SV+  V++Y+RMR+ +
Sbjct: 413 GL-FGFFSSVALFINIAFIFAVMGAIGGTMTLPGIAGIVLTIGTSVDANVLIYERMREEI 471

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +   +  S    I+   ++ +   +  ++ +F+S   + V G   +  FA+    GI  +
Sbjct: 472 R---SGKSPVRAIELGFDKAMSAIIDANVTSFLSSAILFVLGAGPVRGFAVTTMIGIAAS 528

Query: 809 ASSSIFIAAPILLFIYDWRAKN 830
             ++I++   +++  Y WR   
Sbjct: 529 IFTAIWVVRLMIVIWYGWRRPK 550


>gi|146296217|ref|YP_001179988.1| protein-export membrane protein SecF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409793|gb|ABP66797.1| protein translocase subunit secF [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 309

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 144/302 (47%), Gaps = 9/302 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR- 595
              I FM  R +   +SIL  I  +      G NY IDF GG  L +  ++    + +  
Sbjct: 1   MTNIDFMGKRKYFYVLSILVMIIGLISYIIQGFNYDIDFTGGTVLEINLHKVPSAAEIAD 60

Query: 596 -SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--- 651
              L     G  +      E    + +         +T + +  + K+   +        
Sbjct: 61  LEKLTKQITGTQTPIVRKIEDGKKIMINAHEVHGKKRTELSKETRDKLFNAIAKKYNLKK 120

Query: 652 ---QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + VG  +S EL  + +  VII++I MLIYI IRF++ F   A+  L+ D+   L
Sbjct: 121 EDLISYQNVGAVVSSELKSQAVWAVIIASILMLIYIAIRFEFKFGTTAVIALLHDLLIML 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             + LF I  N T +AA+LT++GYS+ND +VV+DR+R+N ++    +  +DL++ S+N+T
Sbjct: 181 TVYTLFKIPLNSTFIAAMLTVLGYSINDTIVVFDRIRENRRIQGK-MDLKDLVNLSMNQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +GRS+ T+    I +  + + G   I  FA+P+  GI     SSIFIA  +         
Sbjct: 240 IGRSLSTAATVIIVLFVLYLMGVQSIKEFALPLLIGITSGTYSSIFIATALWFDWERSTR 299

Query: 829 KN 830
           K 
Sbjct: 300 KK 301


>gi|312964570|ref|ZP_07778826.1| protein-export membrane protein SecD [Escherichia coli 2362-75]
 gi|312290804|gb|EFR18681.1| protein-export membrane protein SecD [Escherichia coli 2362-75]
          Length = 604

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 291/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +    ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTRESQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLSVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 604



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++ +      N    ++ L       G +         +  +   
Sbjct: 358 FVEYKDSGKKDANGRAVLVKQEEVINIANIQSRLGNSFRITGINNPSEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+
Sbjct: 477 ILIVGIMSLLPGATLSMPGIAGIVLTLSVAVDANVLINERIKEEL---SNGRTVQQAIDE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +
Sbjct: 534 GYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 593

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 594 YGGKRVKK 601


>gi|91781852|ref|YP_557058.1| preprotein translocase subunit SecF [Burkholderia xenovorans LB400]
 gi|91685806|gb|ABE29006.1| protein translocase subunit secF [Burkholderia xenovorans LB400]
          Length = 316

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 154/302 (50%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS+L  + ++  L   GL+  ++F GG  + V       
Sbjct: 1   MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLLHRGLHLSVEFTGGTVIEVQYPGAAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  L  L   D   QNF   ++ L+RL  + G + AQ    + V   +    P   
Sbjct: 61  LEPVRGTLGKLGYADAQVQNFGTSRDVLIRLPLKQGYTSAQQS--DQVMSALKADTPQVQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +    I ++IY+  RF+W +A+  +   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGVIANLHDVIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     +S  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKLSVIEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T     + VL M ++GG  +  FA+ +  GI+    SS+F+AA + ++    R   
Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|307728502|ref|YP_003905726.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1003]
 gi|307583037|gb|ADN56435.1| protein-export membrane protein SecD [Burkholderia sp. CCGE1003]
          Length = 686

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 163/516 (31%), Positives = 271/516 (52%), Gaps = 24/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +N  L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+   I    + ++   + ++FAD    +  A +++  +  +       P  +
Sbjct: 160 ASDARTLLRDNNIRDGGVNRVNQTVVINFADQATADAAAKQLSRSIGELQWASQNGPDGS 219

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           + +  T        +      V   A++Q++  +  R++++G++E  IQ+ G+ RI+++L
Sbjct: 220 VQLVGT-------FTPTVQKAVQDAALKQNITTLHNRVNELGVAEPVIQQQGADRIVVEL 272

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L+  ++  
Sbjct: 273 PGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQIIF 332

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +   
Sbjct: 333 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRSVSRDNIGKPMAMVLFEKGKGEVLTV 391

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I KG  
Sbjct: 392 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFH 451

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           ++V G   I +FM+  Y  +G+++   + +N++L +A+LS+L ATLTLP IA I L +G+
Sbjct: 452 SVVWGFAAIAVFMVAYYMLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALGM 511

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+D+N+L+NER+REE R       ++  G++ A++TI DSN+T LIA V L  FG G VR
Sbjct: 512 AIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPVR 571

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           GFAI   + IL SMF+A+   R ++      KK   
Sbjct: 572 GFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 85/209 (40%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+KG   V+    A+ +++
Sbjct: 405 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFM 464

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   ++      L  +AA+   +G +++  V++ +R+
Sbjct: 465 VAYY-MLFGVISMIGLSVNLLLLIAVLSMLQATLTLPGIAAIALALGMAIDANVLINERV 523

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ + +  +G   +  FAI    G
Sbjct: 524 REELR---NGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPVRGFAIVHCIG 580

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  I+   Y  + K   +
Sbjct: 581 ILTSMFSAVFFSRGIVNLWYGGKKKLKTL 609



 Score = 38.1 bits (86), Expect = 6.3,   Method: Composition-based stats.
 Identities = 15/123 (12%), Positives = 30/123 (24%), Gaps = 29/123 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   IGL+  LPN   ++                           ++V 
Sbjct: 3   RYPLWKYAVMLVALVIGLVYTLPNLFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIADKVTL 117
                          + + L    I    +          I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDSTTLSAVEATLAANQIKPEDVTFDNTSANANIRVRLVDTDTQLRVKDLLQK 97

Query: 118 FLQ 120
            L 
Sbjct: 98  SLN 100


>gi|317047145|ref|YP_004114793.1| protein-export membrane protein SecD [Pantoea sp. At-9b]
 gi|316948762|gb|ADU68237.1| protein-export membrane protein SecD [Pantoea sp. At-9b]
          Length = 615

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 164/537 (30%), Positives = 285/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L     +          + LGLDLRGG H ++EVD D  ++   +  
Sbjct: 100 VVALNLAPATPRWLSLLAAE---------PMKLGLDLRGGVHFLMEVDMDTALSKLQEQN 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
           +D LRS L+ +GI   ++ +I N  + + F D   ++     ++   Q            
Sbjct: 151 ADGLRSDLRDKGIPYVNVNKIANYGVEIRFRDGTSRDAAISYLSSRHQ-----------D 199

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ +     +  V++   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 200 LVISSQGSDTLRAVMTDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVE 259

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V           G            +G   ++  +V
Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTTVDPSAAASGRVPGDSEVKMTREGQPVVLYKRV 319

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++   + ++P V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 320 ILTGDHITDSTSS-MDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGKK 378

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 379 DANGRAILVKQEEVINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEE 438

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  +G  +I +G  A + GL+  ++FM+V Y K+GL+A  ++  N++L + ++SLL 
Sbjct: 439 RTIGPTMGQQNITQGLEACLWGLIASIIFMVVFYKKFGLIATSALLCNLVLIVGIMSLLP 498

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANV 558

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + I  SMFTAI   RA++  +   K++  + I
Sbjct: 559 TTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLVYGGKRINKLSI 615



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP + ++ I +G+   +   IA +I++ + +K  F L A + L+ ++   +G  +L  
Sbjct: 440 TIGPTMGQQNITQGLEACLWGLIASIIFMVVFYK-KFGLIATSALLCNLVLIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI  A GI  +  ++I     I+  +Y  +  N 
Sbjct: 556 ANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLVYGGKRINK 612


>gi|312134547|ref|YP_004001885.1| protein-export membrane protein secf [Caldicellulosiruptor
           owensensis OL]
 gi|311774598|gb|ADQ04085.1| protein-export membrane protein SecF [Caldicellulosiruptor
           owensensis OL]
          Length = 310

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 87/303 (28%), Positives = 146/303 (48%), Gaps = 9/303 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I F+  R +   +SIL  +  +      G NY IDF GG  L +  ++      +  
Sbjct: 1   MTRIDFIGKRKYFYIVSILVMVIGLISYLVQGFNYDIDFTGGTVLEINLHKVPTAKEISE 60

Query: 597 --NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--- 651
              L     G  +      E    + +         +T + +  + K+   +        
Sbjct: 61  LEKLTKQITGTQTPIVRKVEDGKKIMINAHEVHGKKKTELSKQTRDKLFAEIAKRYNLKK 120

Query: 652 ---QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + VG  +S EL  + I  V+I++I MLIYI IRF++ F   A+  LI D+   L
Sbjct: 121 EDLVSYQNVGAVVSSELKSQAIWAVVIASILMLIYIAIRFEFRFGTTAVAALIHDLLIVL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             + LF I  N T +AAVLT++GYS+ND +VV+DR+R+N ++    +  +DL++ S+N+T
Sbjct: 181 TVYTLFRIPLNSTFIAAVLTVLGYSINDTIVVFDRIRENRRIAGK-MELKDLVNLSMNQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +GRS+ T+++  I ++ + + G   I  FA P+  G++    SSIFIA  +         
Sbjct: 240 IGRSIATAISVIIVLVVLYIMGVQSIKEFAFPLLIGVISGTYSSIFIATALWFDWELSTR 299

Query: 829 KNA 831
           K  
Sbjct: 300 KKK 302


>gi|111221579|ref|YP_712373.1| preprotein translocase subunit SecF [Frankia alni ACN14a]
 gi|111149111|emb|CAJ60794.1| Protein-export membrane protein secF [Frankia alni ACN14a]
          Length = 417

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 74/295 (25%), Positives = 134/295 (45%), Gaps = 9/295 (3%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + F+  R     +S +  +     +   G   GI+F GG    + ++    +  V   
Sbjct: 12  FHVDFVGRRRVWYAVSGVILVICAVSMIFRGFTLGIEFSGGAVFQLPSHGGT-VEQVEQT 70

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S+ I          E +   R+Q          ++ + + K+ +   P         V
Sbjct: 71  LSSVGIDPADGVVQQLETSKQFRVQTPTLTDAQTDKLTDALAKRFSVTDPD-RDIAVSTV 129

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G      +  K I G+++  + ++IY+ +RF+W  A+ A+  LI D+  T+G ++L G E
Sbjct: 130 GSSWGSTITSKAIQGLVVFLVLVMIYLSVRFEWKMAVAAMAALIHDLVVTMGVYSLVGFE 189

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLIDKSINETLGRSVYT 775
              + V AVLT++G+S+ D VVV+DR+R+N      +   ++ +  + ++NETL RS+ T
Sbjct: 190 VTPSTVIAVLTILGFSLYDTVVVFDRVRENTAGMATSHRRTYAEATNDALNETLVRSLNT 249

Query: 776 SMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           S+ A I V  +        G   +   A+    GI     SS+F A P+L+ +  
Sbjct: 250 SLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPLLVDLKR 304


>gi|145640162|ref|ZP_01795746.1| preprotein translocase subunit SecF [Haemophilus influenzae R3021]
 gi|145274748|gb|EDK14610.1| preprotein translocase subunit SecF [Haemophilus influenzae
           22.4-21]
          Length = 292

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 87/280 (31%), Positives = 144/280 (51%), Gaps = 5/280 (1%)

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
              I       SI LL     N+G+DF GG+      ++  +L  +RS L    I     
Sbjct: 3   LYIIRTFNGNFSIFLLLPKDFNWGLDFTGGVVFDTHFSQSANLEQIRSKLHENGIESPVV 62

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
           Q     ++ ++RL     DS     + E VK  +  +     I++ E VGP +  EL + 
Sbjct: 63  QTTGSVQDVMIRLPASNNDST----IGEHVKSMLQNVDKDIQIRSIEFVGPNVGEELAQG 118

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +   + +   +LIY+  RF+W    G+I +L+ D+  TLG F+   IE +LT VAA+L+
Sbjct: 119 AVYATLATLAMVLIYVGSRFEWRLGFGSIASLVHDVIITLGVFSALQIEIDLTFVAAILS 178

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           ++GYS+ND +VV+DR+R+N +     +   D+ID S+ +TL R++ TS+   + V+ +  
Sbjct: 179 VVGYSINDSIVVFDRVRENFRKI-RRLDTIDIIDISLTQTLSRTIITSVTTLVVVMALFF 237

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +GG  I +F++ +  GI     SSIF+A  I   +   R 
Sbjct: 238 FGGPSIHNFSLALLVGIGFGTYSSIFVAIAIAYDVGLRRE 277


>gi|107021795|ref|YP_620122.1| preprotein translocase subunit SecF [Burkholderia cenocepacia AU
           1054]
 gi|116688742|ref|YP_834365.1| preprotein translocase subunit SecF [Burkholderia cenocepacia
           HI2424]
 gi|170732040|ref|YP_001763987.1| preprotein translocase subunit SecF [Burkholderia cenocepacia
           MC0-3]
 gi|254246283|ref|ZP_04939604.1| SecD/SecF/SecDF export membrane protein [Burkholderia cenocepacia
           PC184]
 gi|105891984|gb|ABF75149.1| protein translocase subunit secF [Burkholderia cenocepacia AU 1054]
 gi|116646831|gb|ABK07472.1| protein translocase subunit secF [Burkholderia cenocepacia HI2424]
 gi|124871059|gb|EAY62775.1| SecD/SecF/SecDF export membrane protein [Burkholderia cenocepacia
           PC184]
 gi|169815282|gb|ACA89865.1| protein-export membrane protein SecF [Burkholderia cenocepacia
           MC0-3]
          Length = 316

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  LF  GL+  ++F GG  + V   +  +
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   +N L+RLQ + G + AQ    + V   +    P  T
Sbjct: 61  LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMGALKAQSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA+L ++GYSVN+ VV++DR+R+  +     +S +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|261212157|ref|ZP_05926443.1| protein-export membrane protein SecD [Vibrio sp. RC341]
 gi|260838765|gb|EEX65416.1| protein-export membrane protein SecD [Vibrio sp. RC341]
          Length = 606

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 153/523 (29%), Positives = 276/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 93  NLAASTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVTQQEESFRSDLRDEKI 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       T     +   
Sbjct: 153 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 204

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 205 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 264

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 265 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 323

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 324 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKQEEV 383

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 384 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 443

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A V G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 444 GIQACVWGMVAVMLFTLLYYRKFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVL 503

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 504 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 563

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 564 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 606



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 90/213 (42%), Gaps = 5/213 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G           +  +   ++   +I     +GP + ++ I  GI   +   +A
Sbjct: 395 RNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACVWGMVA 454

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F + A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 455 VMLFTLLYYR-KFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 513

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      + +  I +            ++   I+ + +   G   I  FA
Sbjct: 514 LIFERIREELRE---GKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 570

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++ GI+ +  ++I     I+  +Y  +  N 
Sbjct: 571 VTLSIGILTSMFTAIVGTRCIVNLLYGGKRINK 603


>gi|28897364|ref|NP_796969.1| preprotein translocase subunit SecD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260876325|ref|ZP_05888680.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AN-5034]
 gi|260898596|ref|ZP_05907092.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           Peru-466]
 gi|28805576|dbj|BAC58853.1| protein-export membrane protein SecD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086850|gb|EFO36545.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           Peru-466]
 gi|308092879|gb|EFO42574.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AN-5034]
          Length = 618

 Score =  210 bits (534), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 156/524 (29%), Positives = 274/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +   +    +  RS L+   I
Sbjct: 104 NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKI 163

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   D          +T          + D       +     +  
Sbjct: 164 RYRAIRPSGKEGVEVLLRDEEQLAEAKRTLTKN--------HPDMNFVESDSNGRYALIA 215

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 216 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275

Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G    +D DG   +++ +V +SG  +    ++
Sbjct: 276 LGATATLEFREVDDKADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILSGASITD-ASS 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    ++ NIGK +A V                       
Sbjct: 335 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRKTPEGKVILTKHEE 394

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 395 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A V G+V ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 455 MGIQACVWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 514

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GAV+GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 TGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRVDKLSI 618



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   +   +A
Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACVWGMVA 466

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 467 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   +  FA
Sbjct: 526 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 582

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     I+  +Y  + 
Sbjct: 583 VTLSIGILTSMFTAIIGTRCIVNLLYGGKR 612



 Score = 40.1 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++         L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVFFAIITAALYALPNIYGEDPAIQVTGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D + + L KE +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTTALDKEHLSHKSIAFENGSILVRFNDTDTQISARDVISEAL 95


>gi|168187982|ref|ZP_02622617.1| protein-export membrane protein SecF [Clostridium botulinum C str.
           Eklund]
 gi|169294187|gb|EDS76320.1| protein-export membrane protein SecF [Clostridium botulinum C str.
           Eklund]
          Length = 289

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 140/286 (48%), Gaps = 5/286 (1%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS+   I  +  L   GLNYGIDFKGG  + +   +  D        + ++  
Sbjct: 7   KTKIWFAISLTVIILGMVCLGVKGLNYGIDFKGGTIVTIEMGKNFDQKTKEEADKIIKKY 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           D +  ++   +  L         +       E+  K   +      + +   VGP +  E
Sbjct: 67  DPTASSYIANETQLEIKSNNLESNSINKMFGELKTKYKLKDNA---LVSQNKVGPSVGNE 123

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L +K    ++I+ IAMLIYI  RF+  F + AI  L+ DI  TLG +    I  N   +A
Sbjct: 124 LKKKAAGALVIATIAMLIYIGFRFEIKFGIAAILALVHDILITLGVYGFTQIPVNSPFIA 183

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +V++DR+R+N +         +++D SI +T+ RSV T +    +++
Sbjct: 184 AMLTIVGYSINDTIVIFDRIRENRRKL-RGRDIVEIVDMSITQTMSRSVNTVLTTLFTIV 242

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            + ++    +  F  P+  GIV  A SSIFIA+PI + +  + +K 
Sbjct: 243 SVYIF-VPSVRDFTFPLIIGIVCGAYSSIFIASPIWVLLRKFGSKK 287


>gi|295675561|ref|YP_003604085.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1002]
 gi|295435404|gb|ADG14574.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1002]
          Length = 316

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 155/302 (51%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS++  + ++  L   GL+  ++F GG  + V       
Sbjct: 1   MEFFRFRKDIPFMQRALIFNAISLITFLAAVFFLVHRGLHLSVEFTGGTVIEVQYPSAAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   ++ L+RL  + G + AQ    E V   +    P   
Sbjct: 61  LDPVRATLGKLGYADAQVQNFGTARDVLIRLPLKSGFTSAQQS--EQVMSALKADTPEVQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +    I ++IY+  RF+W +A+  +   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     +S  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMSVIEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T     + VL M ++GG  +  FA+ +  GI+    SS+F+AA + ++    R   
Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|83590526|ref|YP_430535.1| preprotein translocase subunit SecF [Moorella thermoacetica ATCC
           39073]
 gi|83573440|gb|ABC19992.1| protein translocase subunit secF [Moorella thermoacetica ATCC
           39073]
          Length = 310

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 155/299 (51%), Gaps = 10/299 (3%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGL--NYGIDFKGGIQLGVLANRPVDLSV 593
                 F+  R W   +S+L  I  +  +  H    N+GIDF GG  + V  ++PV    
Sbjct: 1   MNFNFDFVNRRKWWYALSLLVIIPGLIAMALHRPVLNFGIDFTGGNIIQVQFHQPVTSGQ 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR  L+ L +G  S Q     +       +    +         V   +   +    ++ 
Sbjct: 61  VRDVLDGLNLGKSSIQESGSNQ-------FLIRTTELNEEQTNQVISTLQSKLGQLDLKR 113

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
            E VG  I REL  +G+  ++I+ I M+IYI IRF++   L AI  L+ D+  T+GFFAL
Sbjct: 114 NEKVGGTIGRELTIRGVEAMVIAWILMIIYITIRFEFLSGLAAILALVHDVLVTIGFFAL 173

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F  E + T +AA+LT+IGYS+ND +V++DR+R+N++L     +  +++++SIN+TL RS+
Sbjct: 174 FRWEVDSTFIAAILTIIGYSINDTIVIFDRIRENLRL-RKKETIEEVVNRSINQTLTRSI 232

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            T +    ++L + + GG    +FA+ M  G +    SSIF A+P+ +       +  R
Sbjct: 233 NTVLTVIFALLALILLGGETTRTFALAMLIGTISGCYSSIFTASPLWIDFRHLSRERHR 291


>gi|313894652|ref|ZP_07828215.1| export membrane protein SecF [Veillonella sp. oral taxon 158 str.
           F0412]
 gi|313440842|gb|EFR59271.1| export membrane protein SecF [Veillonella sp. oral taxon 158 str.
           F0412]
          Length = 298

 Score =  210 bits (534), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 82/289 (28%), Positives = 146/289 (50%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           +   W   IS +  I S+  +F  G N+GID+ GG  + V+  +PV++S VR  L+   +
Sbjct: 7   KHHRWWFAISSILVIISLISIFMKGFNFGIDYTGGTIVEVVFEQPVEVSQVRDVLKEYNL 66

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            +   Q                     ++     V + +T+ V  +T++  E VG  I  
Sbjct: 67  ENAQIQLSGDTTGDTSGKDVMIRTRNLESSESAAVVESLTKNVGQNTVKRIETVGAVIGS 126

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           E+    +  ++I+ +A+ IYI  RF++  A+ A+  +  D+   LG F+ F +E + + +
Sbjct: 127 EVTEHALTNLLIAFLALAIYISYRFEYKVAISALIAIFHDLIMVLGVFSYFQLEIDASFL 186

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AAVLT++GYS+N+ VV++DR+R+N   +  S +F DL + S+ +++ RS YT      + 
Sbjct: 187 AAVLTVVGYSMNESVVIFDRVRENTHTHKRSDTFADLANASVTQSIHRSFYTLATVMFAC 246

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + + V+GG    +FA+ M  G    A SSI +A  +          + R
Sbjct: 247 VSLYVFGGDTTKNFALCMIIGFASGAYSSICVATSLWAIWKSRNKNDVR 295


>gi|294338530|emb|CAZ86859.1| Preprotein translocase subunit SecF [Thiomonas sp. 3As]
          Length = 317

 Score =  210 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 153/302 (50%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       +S +    ++  LFT GLN  I+F GG  + V  ++  +
Sbjct: 1   MEFFRIKRDIPFMRNALTFNVVSAVLFAAAVFFLFTRGLNLSIEFTGGTVMEVGYSQGAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R+ L  L   D   Q +    + ++RL    G++ ++      V   +    P + 
Sbjct: 61  IDGIRATLSKLGYADAQVQAYGNANDVVIRLPLHKGETSSEQS--TKVMAGLLAADPQAQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            + TE VGP++  EL   G+  + +    ++ Y+ +RF+W F++ AI   + D+   LGF
Sbjct: 119 QRRTEFVGPQVGSELATDGLKALALVIFGIVAYLAVRFEWKFSVAAILANLHDVIIVLGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FALF  EF+L  +AAVL ++GYSVN+ VV++DR+R+N + Y    +   +ID +I  T+ 
Sbjct: 179 FALFQWEFSLPVLAAVLAVLGYSVNESVVIFDRVRENFRKYRK-YTTVQVIDSAITNTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R+V T  +       M  +GG  +  FA+ +  GI ++  SS+F+AA + ++    R   
Sbjct: 238 RTVITHGSTLAMAFSMFFFGGPALHYFALALIIGISMSIYSSVFVAAALAMWFGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|70732295|ref|YP_262051.1| preprotein translocase subunit SecF [Pseudomonas fluorescens Pf-5]
 gi|68346594|gb|AAY94200.1| protein-export membrane protein SecF [Pseudomonas fluorescens Pf-5]
          Length = 304

 Score =  210 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 161/286 (56%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R    G+++L +I ++   F  GLNYG+DF GG  + +   RP D+  VRS 
Sbjct: 3   RTINFMGVRNVAFGVTVLLTILALFSWFHKGLNYGLDFTGGTLIELTYERPADVMKVRSQ 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L      +   Q+F    + LVR+  +      Q                 + ++  E V
Sbjct: 63  LNDAGYHEAIVQSFGATTDLLVRMPGEDPQLGHQVAEALQ----KVGGDNPAQVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGILIYLAFRFQWKFAVGAIVSLIHDVIVTVGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ASLIENINISTTQTLLRTMATSI 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  ++++ +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIVALLFFGGDNLWGFSIALFVGVLAGTYSSIYIANVVLIWL 283


>gi|311108322|ref|YP_003981175.1| protein-export membrane protein SecF [Achromobacter xylosoxidans
           A8]
 gi|310763011|gb|ADP18460.1| protein-export membrane protein SecF [Achromobacter xylosoxidans
           A8]
          Length = 311

 Score =  210 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 153/302 (50%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS +  + ++  + T G +  I+F GG  + V   +   
Sbjct: 1   MEFFRIHRTIPFMRHALVLNIISFVTFLAAVFFIVTRGFHLSIEFTGGTVMEVNYAQTAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  +  L   D   QNF    + ++RL  Q G + A     E V   +        
Sbjct: 61  LENVRGVVSKLGYTDFQVQNFGTSHDVMIRLPLQEGQTSATQS--ETVMAALKTADSGVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL+  G++ +++  I +++Y+  RF+W FA+  +   + D+   LGF
Sbjct: 119 LRRVEFVGPQVGQELLHNGLMALLVVVIGIMVYLGFRFEWKFAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +A VL ++GYSVN+ VV+ DR+R+N + Y       ++I+ +I +T+ 
Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKYRK-ADVHEVINSAITQTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI     SS+F+AA + +++   R   
Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPTLHYFAMALTIGIWFGIYSSVFVAAALAMWLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 91/179 (50%), Gaps = 5/179 (2%)

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTL 402
           + +     VG  +G + ++ G  A++  ++ I++++   +  K+ +    +   +V++ L
Sbjct: 117 VELRRVEFVGPQVGQELLHNGLMALLVVVIGIMVYLGFRFEWKFAVAGVIANLHDVVIIL 176

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAY 460
              +      +L  +AG++  +G +V+ ++++ +RIRE  RK +   V   ++   ++  
Sbjct: 177 GFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKADVHEVINSAITQTI 236

Query: 461 S-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           S TI     T ++   +LFF GG  +  FA+ + + I   +++++ +  A+ +++   +
Sbjct: 237 SRTIITHGSTQMMVLAMLFF-GGPTLHYFAMALTIGIWFGIYSSVFVAAALAMWLGVKR 294


>gi|52425618|ref|YP_088755.1| preprotein translocase subunit SecD [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307670|gb|AAU38170.1| SecD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 616

 Score =  210 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 155/524 (29%), Positives = 285/524 (54%), Gaps = 39/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  ++   +   D LR+ L+KE I
Sbjct: 104 NLAPSTPAWLSSIGGNPMKWGLDLRGGVRFLMEVDMNTALSKRQEQLQDSLRTELRKEKI 163

Query: 87  GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              +++   N  T ++        +    +                   +  + +  +++
Sbjct: 164 QYSAIKNTDNFGTGVTLVKPEQLSDAGRFLRK-----------QHPNLNITESADNTLNL 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS+  + +   +A+EQ++ I+R+R++++G+SE+ IQR G+ RI+++LPG QD +R +++
Sbjct: 213 ALSEQALTEARENAVEQNLGILRKRVEELGVSEAVIQRQGAERIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N S +  +  +           DG    +  +  + G H+  A++ 
Sbjct: 273 LGATATLEFRLVNQNVSPEAMVRNIVPTDTEVKFMRDGQPVALFKRAVLGGEHITNASSG 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D +T +P V ++ D  G     + TR NI KP+A +      +                
Sbjct: 333 LDQQTSRPQVSVTLDSEGGEIMADTTRLNIKKPMATLYVEYKDSGKKDENGKVILEKHEE 392

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q     + QI+G  +   A  L+ +LR+G+L   + IVEER VG  LG+ ++ 
Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEAQNLSVLLRSGALTAPIQIVEERTVGPSLGAQNVA 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GL ++++F +V Y  +GLVA  ++  N++L + L+SLL  ATLT+P IAGI+
Sbjct: 453 QGLNAGLWGLAIVIVFCLVFYKVFGLVASLALCANMVLVVGLMSLLPGATLTMPGIAGII 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G++VD+N+L+ ERI+EE R  + +  +++ G++ A+++IFD+N+T ++ ++VL+  G
Sbjct: 513 LSVGMSVDANVLIFERIKEELRNGRPIQQAINEGYNGAWTSIFDANLTTILTSIVLYAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G V+GFA+T+ L + ISMFTAI+  R ++ +I   K+++ + I
Sbjct: 573 TGPVKGFAVTLALGVAISMFTAITGTRMLINWIYGGKRVEKLSI 616



 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 79/172 (45%), Gaps = 5/172 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP +  + + +G+   +     ++++  + +K  F L A   L  ++   +G  +L  G 
Sbjct: 443 GPSLGAQNVAQGLNAGLWGLAIVIVFCLVFYKV-FGLVASLALCANMVLVVGLMSLLPGA 501

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              +  +A ++  +G SV+  V++++R+++ ++        +  I++  N         +
Sbjct: 502 TLTMPGIAGIILSVGMSVDANVLIFERIKEELR---NGRPIQQAINEGYNGAWTSIFDAN 558

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   ++ + +   G   +  FA+ +A G+ ++  ++I     ++ +IY  + 
Sbjct: 559 LTTILTSIVLYAVGTGPVKGFAVTLALGVAISMFTAITGTRMLINWIYGGKR 610



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 39/120 (32%), Gaps = 26/120 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  IG+L ALPN   +    +                RG         
Sbjct: 4   RYPLWKNLMVILVIAIGVLYALPNIYGEDPAVQISGT------------RG--------- 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                    +    ++++ L    +   S++  +  I   F ++  +    DK+T  L  
Sbjct: 43  -----QTATETTLTDVQTLLTSNQLEPKSIKLEEGSILARFHNTDDQLLAKDKITEKLGQ 97


>gi|83746739|ref|ZP_00943787.1| Protein translocase subunit secF [Ralstonia solanacearum UW551]
 gi|207744284|ref|YP_002260676.1| protein-export membrane [Ralstonia solanacearum IPO1609]
 gi|83726508|gb|EAP73638.1| Protein translocase subunit secF [Ralstonia solanacearum UW551]
 gi|206595689|emb|CAQ62616.1| protein-export membrane [Ralstonia solanacearum IPO1609]
          Length = 322

 Score =  210 bits (533), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 163/305 (53%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S L  I ++  LF +GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIRRDIPFMKHALAFNAVSFLTFIAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  VR+++E L   D   QNF   ++ ++RL  +        A     + V   +T   P
Sbjct: 61  LPKVRADVEKLGYADAQVQNFGTSRDVMIRLPLKNSPDGKPIASAVQSQQVMSALTADTP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G++ ++   I ++IY+ IRF+W FA+  I   + DI   
Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MTTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + VL M V+GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|307129895|ref|YP_003881911.1| secYEG protein translocase auxillary subunit [Dickeya dadantii
           3937]
 gi|306527424|gb|ADM97354.1| SecYEG protein translocase auxillary subunit [Dickeya dadantii
           3937]
          Length = 615

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 171/538 (31%), Positives = 290/538 (53%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    + 
Sbjct: 99  FVVALNLAPATPTWLRMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 149

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+++GI   S+R+  N  + + F D + +++    +T   +           
Sbjct: 150 TMDSLRSDLREKGIQYASVRKSDNYGVEILFRDGQLRDDAVTYLTSRHR----------- 198

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             ++  +    +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI++
Sbjct: 199 DLVINASGSDTLRAVMSDARLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 258

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  N        G            DG    +  +
Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNSNVDPVALSNGRVPGDTEVMNMRDGGPVALYKR 318

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T+  + + ++P V+IS D  G       T+DNIGKP+A +      +  
Sbjct: 319 VILTGDHITDSTS-GNDEYNRPQVNISLDSAGGNAMSNFTKDNIGKPMATLFVEYKDSGK 377

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                Q+      +I+G      A  L+ +LRAG+L   + IVE
Sbjct: 378 KDANGRAILEKQEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 437

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A +AGL + +LFMI  Y K+G++A  ++ LN++L + ++SLL
Sbjct: 438 ERTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYKKFGMIATSALLLNLVLVVGIMSLL 497

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+N
Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDAN 557

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +T LI  ++L+  G G+++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 558 VTTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 76/177 (42%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++   +K  F + A + L+L++   +G  +L  
Sbjct: 440 TIGPTLGMQNITQGLEACLAGLAVSILFMIFFYK-KFGMIATSALLLNLVLVVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 556 ANVTTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612



 Score = 38.9 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   +GLL ALPN   +                          +     
Sbjct: 4   RYPLWKYLMLIVTIVVGLLYALPNLYGEDPA---------------------IQVT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                   L      +++ LK++ +   S+      I   F+    +    + +   L
Sbjct: 42  GTAASESTLVQ----IQNVLKEQNVASKSIALENGAILARFSTPDVQLRAREVLLNAL 95


>gi|254428607|ref|ZP_05042314.1| protein-export membrane protein SecD [Alcanivorax sp. DG881]
 gi|196194776|gb|EDX89735.1| protein-export membrane protein SecD [Alcanivorax sp. DG881]
          Length = 626

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 157/524 (29%), Positives = 275/524 (52%), Gaps = 45/524 (8%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + +   + ++LGLDLRGG H +L+VD D  V   ++ +    +  L+  G+
Sbjct: 104 NLAATTPQWLREIGASPMNLGLDLRGGVHFLLQVDMDSVVKSRMEAWEGTAKLTLRDAGV 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++      +T +F D    +     +   L  +  +                +I + 
Sbjct: 164 RYRAVSVDGTTLTATFGDQVAADAARAPLRQALDKLAMQ----------PAGDSPKIVMT 213

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L++  + ++  +A++Q+   + +R++++G++E+ +QR G+ RI++QLPG QD +  R++L
Sbjct: 214 LNETALKEMQDYAVDQNRTALNKRVNELGVAEAVVQRQGADRIVVQLPGIQDAATARRIL 273

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF-------LRDSDGNQYLVEDKVEISGIHLNGATA 259
           G TA + F  V  + S      G+          +  +G    +      +G  +  A  
Sbjct: 274 GRTATLEFRLVDNSVSSARLRSGMAPPGLEFFPFKGQEGRIVALNKSSIATGDQVIDAKM 333

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------A 295
            FD +  +P V+++ D  GARR   VT  N+G P+                         
Sbjct: 334 GFDQQNGQPEVNVTLDSDGARRMQRVTGKNVGNPMGVLFIETKTDVKKVIDEDGNSVDQM 393

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                + +      Q+    + +I+G      A  LA +LRAGSL   ++IVEER VG  
Sbjct: 394 TSSTDKYVINVATIQSTLGSRFRITGLDNPAEASELALLLRAGSLAAPVSIVEERTVGPS 453

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTL 414
           LG+++I  G  ++  GL L+++FM++ Y  +GL+A+ ++  N+++ + ++SL+  AT+TL
Sbjct: 454 LGAENIEAGLKSMALGLSLVLVFMVIWYKLFGLIANVALLGNLVIIVGVMSLIPGATMTL 513

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL +G+AVD+N+L+ ERIRE+ R+  S   +++ G++RA++TI D+NIT LI  
Sbjct: 514 PGIAGIVLTVGMAVDANVLIFERIREDLRRGLSPRQAIEEGYARAFTTIIDANITTLIVA 573

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           V+LF  G G+V+GFA+T+ + IL SMFTAI   RAM   I    
Sbjct: 574 VILFAAGTGSVQGFAVTLFIGILTSMFTAIIGTRAMAEMIYGRG 617



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 104/258 (40%), Gaps = 6/258 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +  G + +    +    +    ++++ +      +          +  +++         
Sbjct: 366 NPMGVLFIETKTDVKKVIDEDGNSVDQMTSSTDKYVINVATIQSTLGSRFRITGLDNPAE 425

Query: 634 VLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             E  +  +   +    +I     VGP +  E I  G+  + +    +L+++ I +K  F
Sbjct: 426 ASELALLLRAGSLAAPVSIVEERTVGPSLGAENIEAGLKSMALGLSLVLVFMVIWYKL-F 484

Query: 693 ALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            L A   L+ ++   +G  +L  G    L  +A ++  +G +V+  V++++R+R++++  
Sbjct: 485 GLIANVALLGNLVIIVGVMSLIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREDLR-- 542

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
              +S R  I++         +  ++   I  + +   G   +  FA+ +  GI+ +  +
Sbjct: 543 -RGLSPRQAIEEGYARAFTTIIDANITTLIVAVILFAAGTGSVQGFAVTLFIGILTSMFT 601

Query: 812 SIFIAAPILLFIYDWRAK 829
           +I     +   IY   A+
Sbjct: 602 AIIGTRAMAEMIYGRGAR 619


>gi|149926692|ref|ZP_01914952.1| protein export protein SecF [Limnobacter sp. MED105]
 gi|149824621|gb|EDM83837.1| protein export protein SecF [Limnobacter sp. MED105]
          Length = 317

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 97/307 (31%), Positives = 163/307 (53%), Gaps = 6/307 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FMR       IS L    ++  L T GLN  ++F GG+ +    ++P +
Sbjct: 1   MELFRITKDIPFMRHAKIFNIISFLTFAAAVFFLSTKGLNLSVEFTGGVLVEARYSQPAE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-----VAQTRVLEMVKKKITEI 645
           L  +R  L +  I +   QNF   ++ LVRL  +   S       +     M ++ ++  
Sbjct: 61  LEKIREGLRATGIDEPQVQNFGTARDVLVRLAVKDLQSGVLGTEGKLNQQAMTEQVLSLG 120

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
            P   +   E VGP++ REL   G++ +++  I ++IY+ +RF+W FA+ AI   + D+ 
Sbjct: 121 GPDVQLMRVEFVGPQVGRELAENGVIALMVVIIGIMIYLALRFEWKFAVSAIVANLHDVV 180

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGFFA FG EF+L+ +AAVL ++GYSVN+ VVV+DR+R+  K     ++  + ID +I
Sbjct: 181 IILGFFAFFGWEFSLSVLAAVLAVLGYSVNESVVVFDRIRETFKK-VRRMTVSETIDNAI 239

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             T+ R++ T  +  I V  M  +GG  +  FA+ +  GI+    SS+ +A+P+L+++  
Sbjct: 240 TRTISRTIITHGSTQIMVCSMLFFGGPTLHGFALALTIGILFGIYSSVLVASPMLMWMGL 299

Query: 826 WRAKNAR 832
            R    +
Sbjct: 300 TREDLVK 306



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/194 (20%), Positives = 98/194 (50%), Gaps = 5/194 (2%)

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVIL 400
             + ++    VG  +G +    G  A++  ++ I++++ + +  K+ + A  +   +V++
Sbjct: 122 PDVQLMRVEFVGPQVGRELAENGVIALMVVIIGIMIYLALRFEWKFAVSAIVANLHDVVI 181

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR--KNQSVFCSLDMGFSR 458
            L   +  G   +L  +A ++  +G +V+ +++V +RIRE  +  +  +V  ++D   +R
Sbjct: 182 ILGFFAFFGWEFSLSVLAAVLAVLGYSVNESVVVFDRIRETFKKVRRMTVSETIDNAITR 241

Query: 459 AYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
             S TI     T ++   +LFF GG  + GFA+ + + IL  +++++ +   M++++   
Sbjct: 242 TISRTIITHGSTQIMVCSMLFF-GGPTLHGFALALTIGILFGIYSSVLVASPMLMWMGLT 300

Query: 518 KKMKSIDINPLSRF 531
           ++     +     F
Sbjct: 301 REDLVKPVKKDKEF 314


>gi|251793028|ref|YP_003007754.1| preprotein translocase subunit SecF [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534421|gb|ACS97667.1| protein-export membrane protein SecF [Aggregatibacter aphrophilus
           NJ8700]
          Length = 321

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 162/293 (55%), Gaps = 6/293 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               ++FM+ R WG   S++    S+  +FT G N+G+DF GG+ +    ++P DL  +R
Sbjct: 19  PFRLVEFMKFRMWGYLASVVIIAVSLFFVFTKGFNWGLDFTGGVVVDTHFSQPADLEKIR 78

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L    I     Q   G ++ ++RL           ++ + VKK ++ +     I++ E
Sbjct: 79  TTLTQNGIESPLVQTTGGVRDVMIRLPATE-----NAQIGDHVKKMLSTLDSDIQIRSIE 133

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL +  I   + + I +L+Y+ +RF+W  A G + +L  D+  TLG F+   
Sbjct: 134 FVGPNVGEELTQGAIYATLTTLIMLLLYVGMRFEWRLATGGVLSLAHDVIVTLGAFSYLQ 193

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IE +LT +AA+L+++GYS+ND +VV+DR+R+N +      S  D+I+ S+ +TL R++ T
Sbjct: 194 IEMDLTFIAAILSVVGYSLNDSIVVFDRVRENFRKIRRIASI-DIINISLTQTLSRTIMT 252

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S+   I V+ + V+GG  I SF++ +  GI     SSIF+A  I   +   R 
Sbjct: 253 SVTTLIVVIALFVFGGPTIHSFSLALLIGIGFGTYSSIFVAIAIAYDLGLDRE 305


>gi|581230|emb|CAA39634.1| unnamed protein product [Escherichia coli K-12]
          Length = 615

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 291/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +    +   D L S L+++GI
Sbjct: 104 NLAPATPRWLAAIHAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLASDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F D++ ++     ++                 ++ +    ++  
Sbjct: 164 PYTTVRKENNYGLSITFRDAKARDEAIAYLSKR-----------HPDLVISSQGSNQLRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMSDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAASGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIE 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGL++ +LFMI+ Y K+GL+A  ++  N+IL + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLLVSILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  ++D G+  A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +  ++++ I +K  F L A + LI ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIEQGLEACLAGLLVSILFMIIFYK-KFGLIATSALIANLILIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  ID+           
Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAIDEGYRGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRVKK 612


>gi|118580217|ref|YP_901467.1| preprotein translocase subunit SecF [Pelobacter propionicus DSM
           2379]
 gi|118502927|gb|ABK99409.1| protein translocase subunit secF [Pelobacter propionicus DSM 2379]
          Length = 307

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 87/297 (29%), Positives = 148/297 (49%), Gaps = 4/297 (1%)

Query: 538 IAIQFMRARFWGVGISILFS---ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             I FM  +     ISI+ S   I  I  +     N GIDF GG  + +  ++P+D++  
Sbjct: 7   TNIDFMGKKKLSFAISIIISLVGIMGIISIARGTANMGIDFSGGTAMQLKFSKPMDIAKA 66

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I     Q        L+++      S+ +         +      + T++++
Sbjct: 67  RAALHKNGIPKADLQEIRDGNKLLIKIDRNTSISLGKAADAVQAAFRKAHPDNIFTVESS 126

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +GP I  +L +  +V V I+ + +++YI  RF + F + A    I D       F + 
Sbjct: 127 TEIGPSIGDKLRKDTLVAVAIALLGIILYIAWRFDFKFGIAATLATIHDCLAMFAVFYIL 186

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             E NL  V AVLT+ GYS+ D VVV+DR+R+NM  +        L ++SINE L RS+ 
Sbjct: 187 DREINLLFVTAVLTIAGYSLTDTVVVFDRIRENMHKHLKEA-LPPLFNRSINEVLSRSII 245

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++  F++   + ++GG VI  F++ +  GIVV A SS+F+A+PI++ + +   +  
Sbjct: 246 TALTTFLASASLFLFGGEVIHDFSLALLVGIVVGAYSSVFVASPIVVLLEERALRKK 302


>gi|262168808|ref|ZP_06036503.1| protein-export membrane protein SecD [Vibrio cholerae RC27]
 gi|262190474|ref|ZP_06048725.1| protein-export membrane protein SecD [Vibrio cholerae CT 5369-93]
 gi|262022926|gb|EEY41632.1| protein-export membrane protein SecD [Vibrio cholerae RC27]
 gi|262033646|gb|EEY52135.1| protein-export membrane protein SecD [Vibrio cholerae CT 5369-93]
 gi|327483530|gb|AEA77937.1| Protein-export membrane protein SecD [Vibrio cholerae LMA3894-4]
          Length = 606

 Score =  210 bits (533), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 93  NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       +     +   
Sbjct: 153 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 204

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 205 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 264

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 265 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 323

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 324 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 383

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 384 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 443

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 444 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 503

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 504 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 563

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 564 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 606



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 360 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 419

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 478

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 535

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 595

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 596 YGGKRINK 603


>gi|229525389|ref|ZP_04414794.1| protein-export membrane protein SecD [Vibrio cholerae bv. albensis
           VL426]
 gi|229338970|gb|EEO03987.1| protein-export membrane protein SecD [Vibrio cholerae bv. albensis
           VL426]
          Length = 617

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 150/523 (28%), Positives = 275/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       +     +   
Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGCFVLVAK 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++I EER +G  +G  +I  
Sbjct: 395 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIAEERTIGPSMGQQNIDM 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 431 LIAPISIAEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 606

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 607 YGGKRINK 614



 Score = 40.1 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   +  L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D +   L K  +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDIISEAL 95


>gi|300690470|ref|YP_003751465.1| SecYEG protein translocase auxillary subunit [Ralstonia
           solanacearum PSI07]
 gi|299077530|emb|CBJ50156.1| SecYEG protein translocase auxillary subunit [Ralstonia
           solanacearum PSI07]
          Length = 322

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 164/305 (53%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S L  I ++  LF +GL+  ++F GG  + V   +  +
Sbjct: 1   MEFFRIRRDIPFMKHALAFNAVSFLTFIAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  +R+++E L   D   QNF   ++ ++RL  + G      A     + V   +T   P
Sbjct: 61  LPKIRADVEKLGYADAQVQNFGTSRDVMIRLPLKNGPDGKPIASAVQSQQVMSALTATTP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G++ ++   I ++IY+ IRF+W FA+  I   + DI   
Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + VL M V+GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|206561645|ref|YP_002232410.1| preprotein translocase subunit SecF [Burkholderia cenocepacia
           J2315]
 gi|198037687|emb|CAR53630.1| putative protein-export membrane protein SecF [Burkholderia
           cenocepacia J2315]
          Length = 316

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  LF  GL+  ++F GG  + V   +  +
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   +N L+RLQ + G + AQ    + V   +    P  T
Sbjct: 61  LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMGALKAQSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA+L ++GYSVN+ VV++DR+R+  +     +S +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|313497205|gb|ADR58571.1| SecF [Pseudomonas putida BIRD-1]
          Length = 302

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 160/287 (55%), Gaps = 5/287 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R     +++L ++ ++   +  GLN+G+DF GG  + +   RP DL  VR+
Sbjct: 1   MKTINFMGVRNVAFAVTVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +    +   Q+F    + LVR+                   +       +T++  E 
Sbjct: 61  ELVNSGFDEAVVQSFGATTDLLVRMPGDDPQLGN----KVAAALQKAGGDNPATVKRVEF 116

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  TLG  + F I
Sbjct: 117 VGPQVGEELRDQGGMGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQI 176

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     S  + I+ S  +TL R+V TS
Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINISTTQTLLRTVATS 235

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++  +++  +  +GG  +  F++ +  G++    SSI+IA  +L+++
Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282


>gi|308125752|ref|ZP_05777112.2| protein-export membrane protein SecD [Vibrio parahaemolyticus
           K5030]
 gi|308114720|gb|EFO52260.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           K5030]
          Length = 607

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 156/524 (29%), Positives = 274/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +   +    +  RS L+   I
Sbjct: 93  NLAPSTPDWLEAIGASPLKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELRDAKI 152

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   D          +T          + D       +     +  
Sbjct: 153 RYRAIRPSGKEGVEVLLRDEEQLAEAKRTLTKN--------HPDMNFVESDSNGRYALIA 204

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 205 TFTEQRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264

Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G    +D DG   +++ +V +SG  +    ++
Sbjct: 265 LGATATLEFREVDDKADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILSGASITD-ASS 323

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    ++ NIGK +A V                       
Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRKTPEGKVILTKHEE 383

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A V G+V ++LF ++ Y  +GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 444 MGIQACVWGMVAVMLFTLLYYRGFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIV 503

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GAV+GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 564 TGAVKGFAVTLSIGILTSMFTAIIGTRCIVNLLYGGKRVDKLSI 607



 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 90/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   +   +A
Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACVWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMLFTLLYYR-GFGLIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   +  FA
Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAVKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     I+  +Y  + 
Sbjct: 572 VTLSIGILTSMFTAIIGTRCIVNLLYGGKR 601


>gi|299065732|emb|CBJ36908.1| SecYEG protein translocase auxillary subunit [Ralstonia
           solanacearum CMR15]
          Length = 322

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 163/305 (53%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S L  I ++  LF +GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIRRDIPFMKHALAFNAVSFLTFIAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  VR+++E L   D   QNF    + ++RL  + G      A     + V   +T   P
Sbjct: 61  LPKVRADVEKLGYADAQVQNFGTSHDVMIRLPLKNGPDGKPIASAVQSQQVMSSLTATTP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G++ ++   I ++IY+ IRF+W FA+  I   + DI   
Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + VL M V+GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|311694372|gb|ADP97245.1| preprotein translocase subunit SecD [marine bacterium HP15]
          Length = 624

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 157/522 (30%), Positives = 270/522 (51%), Gaps = 37/522 (7%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
               P  +       + LGLDLRGG H +LEVD +  V+  L   S +++  L++E I  
Sbjct: 107 AASTPGWLKSLGAGPMKLGLDLRGGVHFLLEVDMETAVSQRLDAMSGQIKRELREERIRY 166

Query: 89  FSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
                  N+ I LSF D   +    + V             +  + L        + + L
Sbjct: 167 RGGDVQDNREIVLSFRDEASRTEAFNMVRDQYNEFLLDEQTEGDEFL--------LVLTL 218

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           S+  +  +  +A+EQ++  IR R++++G++E  +Q+ G+ RI+++LPG QD ++ +++LG
Sbjct: 219 SEAEVTAIQDYALEQNLTTIRNRVNELGVAEPLVQQQGADRIIVELPGVQDTAQAKRVLG 278

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
            TA + F                   RD       +E +V  +G ++  A   FD    +
Sbjct: 279 ATANLEFRMEA-RQDAPSSETEEFGFRDQPQRTARLEQEVIATGNNVANAQQAFDENG-Q 336

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV-------------------- 307
           P V+I+ D +G       TR+ IG+ +AV+                              
Sbjct: 337 PQVNITMDSVGGDLMNRATRNAIGRRMAVLFIEYRTETETRMVDGEPQEVENRVVEKGII 396

Query: 308 ---INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                Q+      +I+G  +I  A  LA +LRAG+L   +  V+ER +G  LG  +I  G
Sbjct: 397 SLATVQSALGSSFRITGLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAG 456

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             ++  G  L++L+M+V Y  +G+VA+ ++ LN++L +A +S+L ATLTLP IAGIVL +
Sbjct: 457 MMSVALGFGLVLLYMLVYYRGFGVVANIALTLNLMLLVACMSILSATLTLPGIAGIVLTV 516

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+ ERI+EE +       +++ G+SRA+ +IFD+NIT L+  V+LF  G G 
Sbjct: 517 GMAVDANVLIFERIKEELKSGVPPQTAINSGYSRAFVSIFDANITTLLVAVILFAMGSGP 576

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           V+GFA+T+ + IL SMF+ + + R+++  +   ++++ + I 
Sbjct: 577 VKGFAVTLCIGILTSMFSGLMVSRSIVNIVYGGRRVEKLSIG 618



 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 94/248 (37%), Gaps = 4/248 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +         +          ++ +    +    ++ L       G           +  
Sbjct: 368 IEYRTETETRMVDGEPQEVENRVVEKGIISLATVQSALGSSFRITGLDSIPEAAELALLL 427

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           +   +           +GP + ++ I  G++ V +    +L+Y+ + ++  F + A   L
Sbjct: 428 RAGALAAPMYFVQERTIGPSLGQKNIDAGMMSVALGFGLVLLYMLVYYR-GFGVVANIAL 486

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L++   +   ++      L  +A ++  +G +V+  V++++R+++ +K   + +  +  
Sbjct: 487 TLNLMLLVACMSILSATLTLPGIAGIVLTVGMAVDANVLIFERIKEELK---SGVPPQTA 543

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I+   +         ++   +  + +   G   +  FA+ +  GI+ +  S + ++  I+
Sbjct: 544 INSGYSRAFVSIFDANITTLLVAVILFAMGSGPVKGFAVTLCIGILTSMFSGLMVSRSIV 603

Query: 821 LFIYDWRA 828
             +Y  R 
Sbjct: 604 NIVYGGRR 611



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 54/526 (10%), Positives = 136/526 (25%), Gaps = 38/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++  +   IG + ALPN  P     +   A     ++ G              
Sbjct: 4   KYPLWKNLVILVALVIGFIYALPNLFPDDYAIQITGARSSTEVNAG-------------- 49

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
                   L      L S      +   +++     I L+  +S  +      V   L  
Sbjct: 50  -------VLDRAVGVLESR--GIEVKSSTLQDRDALIRLT--NSEDQLQARPLVQAALGN 98

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174
                LN+       + +       +            +  +  A+ Q ++ +  +I + 
Sbjct: 99  EYLVALNMAASTPGWLKSLGAGPMKLGLDLRGGVHFLLEVDMETAVSQRLDAMSGQIKRE 158

Query: 175 GISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
              E    R         I L    + SR         + +   +        F+  +  
Sbjct: 159 LREERIRYRGGDVQDNREIVLSFRDEASRTEAFNMVRDQYNEFLLDEQTEGDEFLLVLTL 218

Query: 233 LRDSD--GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                     Y +E  +      +N           +    I  +  G +   +  R   
Sbjct: 219 SEAEVTAIQDYALEQNLTTIRNRVNELGVAEPLVQQQGADRIIVELPGVQDTAQAKRVLG 278

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSG--KAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                         AP           + Q +     E       +  A     +    +
Sbjct: 279 ATANLEFRMEARQDAPSSETEEFGFRDQPQRTARLEQEVIATGNNVANAQQAFDENGQPQ 338

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                  +G D + + T   +   + ++        +  +V      +   +    +  L
Sbjct: 339 VNITMDSVGGDLMNRATRNAIGRRMAVLFIEYRTETETRMVDGEPQEVENRVVEKGIISL 398

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
               +    +  + G+    ++  L                    +G S     I    +
Sbjct: 399 ATVQSALGSSFRITGLDSIPEAAELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMM 458

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           +  +   ++  +     RGF +   +++ +++   ++ +  +   +
Sbjct: 459 SVALGFGLVLLYMLVYYRGFGVVANIALTLNLMLLVACMSILSATL 504


>gi|296134584|ref|YP_003641826.1| protein-export membrane protein SecF [Thiomonas intermedia K12]
 gi|295794706|gb|ADG29496.1| protein-export membrane protein SecF [Thiomonas intermedia K12]
          Length = 317

 Score =  210 bits (533), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 154/302 (50%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       +S +  + ++  LFT GLN  I+F GG  + V  ++  +
Sbjct: 1   MEFFRIKRDIPFMRNALTFNVVSAVLFVAAVFFLFTRGLNLSIEFTGGTVMEVGYSQGAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R+ L  L   D   Q +    + ++RL    G++ ++      V   +    P + 
Sbjct: 61  IDGIRATLSKLGYADAQVQAYGNANDVVIRLPLHKGETSSEQS--TKVMAGLLAADPQAQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            + TE VGP++  EL   G+  + +    ++ Y+ +RF+W F++ AI   + D+   LGF
Sbjct: 119 QRRTEFVGPQVGSELATDGLKALALVIFGIVAYLAVRFEWKFSVAAILANLHDVIIVLGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FALF  EF+L  +AAVL ++GYSVN+ VV++DR+R+N + Y    +   +ID +I  T+ 
Sbjct: 179 FALFQWEFSLPVLAAVLAVLGYSVNESVVIFDRVRENFRKYRK-YTTVQVIDSAITNTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R+V T  +       M  +GG  +  FA+ +  GI ++  SS+F+AA + ++    R   
Sbjct: 238 RTVITHGSTLAMAFSMFFFGGPALHYFALALIIGISMSIYSSVFVAAALAMWFGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|254490709|ref|ZP_05103894.1| protein-export membrane protein SecF [Methylophaga thiooxidans
           DMS010]
 gi|224464165|gb|EEF80429.1| protein-export membrane protein SecF [Methylophaga thiooxydans
           DMS010]
          Length = 316

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 166/298 (55%), Gaps = 2/298 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              + +   IQFM  R      S +  I SI  L   GLN+GIDF GG  + +     VD
Sbjct: 1   MQFLKNETNIQFMSKRRLAAIFSAILIIASITSLAVQGLNFGIDFTGGTMIELGYQEQVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +RS+L      D + QNF    + L+RL              E+V     +      
Sbjct: 61  LNQLRSDLTEGGYPDATVQNFGSIHDVLIRLPVIE-TQNMAQLSNEVVSMLQAKNETEID 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++  EL  +G + ++ +   +LIY+ +RF++ FA+G++  LI D+  TLGF
Sbjct: 120 VRRVEFVGPQVGEELTEQGGLAMLYALFGILIYVSLRFEYRFAIGSVVALIHDVVLTLGF 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+L  IEF+LT +AA+L +IGYS+ND +VV+DR+R+         S  +++++++N+TL 
Sbjct: 180 FSLTRIEFDLTVLAAILAIIGYSLNDTIVVFDRIRETFLRMRKGSS-EEIVNRALNDTLS 238

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS+   + VL +  +GG VI +F+I +  GI++   SSI+IA+  +L +   + 
Sbjct: 239 RTMMTSLTTLLVVLALFSFGGEVIHAFSIALLLGIIIGTYSSIYIASNTILAMGVSKE 296


>gi|261346389|ref|ZP_05974033.1| protein-export membrane protein SecF [Providencia rustigianii DSM
           4541]
 gi|282565707|gb|EFB71242.1| protein-export membrane protein SecF [Providencia rustigianii DSM
           4541]
          Length = 322

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 164/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR      GISI+  I S  ++   G N+G+DF GG  + +  ++
Sbjct: 5   YTVEQLNYGRKVYDFMRWDNVAFGISIVLLIASCVIIGLKGFNWGLDFTGGTVIEINLSQ 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R +L +    D   QNF   ++ ++RL    G    Q    E++      +  
Sbjct: 65  PADLDKIRDSLSNSNHKDPLIQNFGSSRDIMIRLPPVEG-VAGQEVGKEIITIINQNVDD 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  EL + G + ++ + I +LIY+  RF+W  A GA+  L  D+  T
Sbjct: 124 QATVKRIEFVGPSVGAELAQTGALALLTALICILIYVGFRFEWRLAAGAVLALAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +LF IE ++T VA+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 LGILSLFHIEIDMTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLLVVLMLYLFGGAMLEGFSLVMLIGVTIGTISSIYVASALALKMGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|330895870|gb|EGH28156.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 604

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 167/539 (30%), Positives = 275/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 85  VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 135

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F D   +E     V             +    
Sbjct: 136 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 194

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 195 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 247

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 248 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 306

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 307 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 365

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 366 GVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 425

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG D+I KG  A + G++ + LF++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 426 AEERTIGPSLGGDNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 485

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 486 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 545

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 546 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 604



 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         D    +    ++ L       G +         +  +
Sbjct: 356 TTTYTKQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 415

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F L A   L 
Sbjct: 416 AGGLAAPMYFAEERTIGPSLGGDNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 474

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 475 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 531

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 532 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 591

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 592 LIYGGRDFKK 601


>gi|254463668|ref|ZP_05077079.1| protein-export membrane protein SecF [Rhodobacterales bacterium
           Y4I]
 gi|206684576|gb|EDZ45058.1| protein-export membrane protein SecF [Rhodobacterales bacterium
           Y4I]
          Length = 322

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 174/305 (57%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P+  +  F +     +GIS L  + ++      GLN+GIDF+GG  +   A+  
Sbjct: 1   MRLRLVPEETSFDFFKRAKLWLGISALMMVVAMVSFLWQGLNFGIDFRGGTTIRTEASEV 60

Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD+   R  L   ++GD            + +   ++R+Q Q         ++E +K  +
Sbjct: 61  VDVGAYRDALAVHELGDVSITEVFDPSFEEDQHVAMIRIQAQGDGEAISGEMIETLKTSL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             + P     + E VGPK+S ELI   ++ V ++  A+L+YIW+RF+W FALGA+  L+ 
Sbjct: 121 DAVAPGIKFVSVESVGPKVSGELITTAVIAVALAIAAVLVYIWLRFEWQFALGAVAALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y       ++++
Sbjct: 181 DVVLTIGVFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRRY-KQKDLAEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINETL R+V TS+   ++++ + V GG VI  F   M +G+VV   SS+F+A+ ILL 
Sbjct: 240 ISINETLSRTVMTSVTTLLALISLYVLGGDVIRGFVFAMIWGVVVGTYSSVFVASTILLK 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|291288351|ref|YP_003505167.1| protein-export membrane protein SecF [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885511|gb|ADD69211.1| protein-export membrane protein SecF [Denitrovibrio acetiphilus DSM
           12809]
          Length = 303

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 167/302 (55%), Gaps = 1/302 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F LI       FM        IS L  I S+ ++FT G N+GIDF GG  + +  +   
Sbjct: 1   MFELIKTGTQFDFMSKTKIFFVISGLVFILSLGIVFTKGFNFGIDFAGGTIIQMQFSSAP 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D+  +RS ++SL IG++  QNF   +  L+R++    D       ++      T      
Sbjct: 61  DVDKIRSAMDSLDIGEVVIQNFGAPEEILIRVEKTERDLNEVANTIKESMGN-TFPDNEF 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP++  +L  K    V+ S I +LIY+  RF+  FA+GA+  +  D+  TLG
Sbjct: 120 IVERVEQVGPQVGADLKSKATYAVLYSLIGVLIYVAFRFQLIFAVGAVLAISHDVVITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F++ G E  LT +AA+LT++GYS+ND +VV+DR+R+NM+   T +  + LI+KS+NETL
Sbjct: 180 IFSIAGKEITLTIIAALLTIVGYSLNDTIVVFDRIRENMQEDKTDMDLKKLINKSLNETL 239

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R+V TS+   ++V  + ++GG VI  FA  +  GIVV   SSI IA+  +  +   + +
Sbjct: 240 SRTVLTSLTTLLAVGSLYLFGGEVINGFAFALLMGIVVGTYSSIGIASAFVYVLTKKKRE 299

Query: 830 NA 831
             
Sbjct: 300 AK 301


>gi|329926746|ref|ZP_08281154.1| export membrane protein SecF [Paenibacillus sp. HGF5]
 gi|328938946|gb|EGG35314.1| export membrane protein SecF [Paenibacillus sp. HGF5]
          Length = 305

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 160/299 (53%), Gaps = 9/299 (3%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  F+        +SI+ +I  +  L T GLNYG+DF+ G  + +  ++P+    +
Sbjct: 1   MSFKNFDFVGKSRIFYVLSIVITILGLVFLLTRGLNYGVDFQSGSNVDISLSKPLTTEQI 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + LE   IG+ +      +       +     S   T   +   +   E +   +    
Sbjct: 61  NTVLEDAGIGEDASVTPGND-------RVNIRFSEVLTEDQDQKLRSGIEKLDEKSTFEI 113

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             V P++++EL R  I  V+IS I ++IY+ IRF+W FA+ AI  L+ D    +  F++ 
Sbjct: 114 NTVDPEMAKELGRNAIYAVLISCIGIIIYVSIRFEWRFAIAAIVALLHDAFVVISIFSIL 173

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRS 772
           G+E +LT + AVLT+IGYS+ND +V++DR+R+N++          +DL++KS+++T+GRS
Sbjct: 174 GLEVDLTFIIAVLTIIGYSINDTIVIFDRIRENLRFAKIKRVSDLKDLVNKSLSQTIGRS 233

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +YT+++ FI+   M + GG  I  F++ +  G+   A SSIFIA+P+ L +      N 
Sbjct: 234 IYTALSVFIAAFFMLLLGGESIQMFSLAICIGLAFGAYSSIFIASPLWLLLKGRNVNNK 292


>gi|126732592|ref|ZP_01748389.1| protein-export membrane protein SecF [Sagittula stellata E-37]
 gi|126706876|gb|EBA05945.1| protein-export membrane protein SecF [Sagittula stellata E-37]
          Length = 322

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 112/305 (36%), Positives = 178/305 (58%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+ D +   F       +GIS L  + ++   F  GLNYGIDF+GG  +   +  P
Sbjct: 1   MRLRLVKDDLNWDFFSRSKLWLGISGLMVVIALASFFIQGLNYGIDFRGGTTIRTESAEP 60

Query: 589 VDLSVVRSNLESLQIGD------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD+   R  L SL +GD            D +   +VR+  Q G+    T V++  +  +
Sbjct: 61  VDVGAYRDALASLGLGDIVISEVFDPNFRDDQNVAMVRIGAQDGEEAVSTEVIDSAEAAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            E+ P     + E VGPK+S+ELI+  ++ V ++  A+L+YIW+RF+W FALGA+  LI 
Sbjct: 121 KEVAPDIRFTSVESVGPKVSQELIQTAVLAVGLAIAAVLVYIWLRFEWQFALGAVIALIH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+   I F+L  +AA+LT++GYS+ND VVV+DR+R+N+  Y  S   +++++
Sbjct: 181 DVALTIGIFSELQIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLIKY-KSKDLKEVLN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINET+ R++ TS+   ++++ + V GG VI  F   M +G++V   SSIF+A+  LL 
Sbjct: 240 MSINETMSRTIMTSLTTLLALIALLVLGGDVIRGFVFAMTWGVIVGTYSSIFVASAFLLR 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|90407019|ref|ZP_01215209.1| protein export protein SecD [Psychromonas sp. CNPT3]
 gi|90311890|gb|EAS39985.1| protein export protein SecD [Psychromonas sp. CNPT3]
          Length = 620

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 165/526 (31%), Positives = 273/526 (51%), Gaps = 39/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +       + LGLDLRGG H ++EVD D+ VN        +LRS L+++ I
Sbjct: 104 NLAPATPAWLSAIGATPLKLGLDLRGGVHFLMEVDMDEAVNKSQVQMVQDLRSELREQKI 163

Query: 87  GVFSMRQIQNK--ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
               +R+ +N   + + F +    +     +          +N            E  + 
Sbjct: 164 RFRGIREAKNTSAVIIRFVNEEMLDQAIQHLK--------PINPGYAFTDEQVKNEFVLK 215

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           I ++   +  +   A++Q++ I+R R++++G++E  +QR GS RI+++LPG QD +R ++
Sbjct: 216 IEMTDEKLRAIKEDALQQNLGILRNRVNELGVAEPLVQRQGSDRIVVELPGIQDTARAKE 275

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFL-----RDSDGNQYLVEDKVEISGIHLNGATA 259
           +LG TA + FH V         + G         +   G   +++ K+ ++G H+  A +
Sbjct: 276 ILGATATLEFHAVDSTTDINDALSGRLPASSIIHKTRSGRPVVIKKKIILTGNHIVDAQS 335

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------------ 301
           + D    +P V IS D  G  +    T+ NIGKP+A +                      
Sbjct: 336 SNDEYG-RPQVSISLDSQGGSKMSRFTKHNIGKPMATLFIEYLPTGKKKANGKVIIEKRE 394

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      QA      +I+G      A  LA +LRAG+L   + IVEER +G  LG  +I
Sbjct: 395 EIANVATIQAQLGRSFRITGLDNAAEAHNLALLLRAGALIAPIQIVEERTIGPSLGEQNI 454

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420
             G  A+  GL  + LFM++ Y K+G VA+  +  N+++ + L+S+L  ATLTLP IAGI
Sbjct: 455 GNGIKAMAYGLFAVCLFMLIYYRKFGAVANCVLIFNIVMIIGLMSMLPGATLTLPGIAGI 514

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +G+AVD+N+L+ ERIREE  + +SV  ++  G++ A+STI D+NIT  I  V+LF  
Sbjct: 515 VLTVGMAVDANVLIFERIREELLEGKSVQRAIHEGYANAFSTIADANITTFITAVILFAV 574

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDI 525
           G G+++GFA+T+ + I  SMFT+I   RA++         +K + I
Sbjct: 575 GTGSIKGFAVTLMIGIATSMFTSIFGTRAIVNALWGGRNDIKKLSI 620



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/220 (18%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +  L R     G   A       +  +   ++    I     +GP +  + I  GI  + 
Sbjct: 403 QAQLGRSFRITGLDNAAEAHNLALLLRAGALIAPIQIVEERTIGPSLGEQNIGNGIKAMA 462

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYS 733
               A+ +++ I ++  F   A   LI +I   +G  ++  G    L  +A ++  +G +
Sbjct: 463 YGLFAVCLFMLIYYR-KFGAVANCVLIFNIVMIIGLMSMLPGATLTLPGIAGIVLTVGMA 521

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  V++++R+R+ +       S +  I +            ++  FI+ + +   G   
Sbjct: 522 VDANVLIFERIREELLE---GKSVQRAIHEGYANAFSTIADANITTFITAVILFAVGTGS 578

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I  FA+ +  GI  +  +SIF    I+  ++  R    ++
Sbjct: 579 IKGFAVTLMIGIATSMFTSIFGTRAIVNALWGGRNDIKKL 618



 Score = 40.8 bits (93), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/119 (12%), Positives = 32/119 (26%), Gaps = 26/119 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  IL   +  +  L A PN   +    +                           
Sbjct: 4   KFPMWKYILLCFVIVVSFLYAAPNLYGEDPAVQ-------------------VSATRGAK 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            +           + + S L++  I   S +    +I +  + S  +    D +   L+
Sbjct: 45  VE-------NQTFERVNSLLQENNITAKSSKLENGQILIRLSSSTDQLMARDIIKNELK 96


>gi|127513263|ref|YP_001094460.1| preprotein translocase subunit SecD [Shewanella loihica PV-4]
 gi|126638558|gb|ABO24201.1| protein-export membrane protein SecD [Shewanella loihica PV-4]
          Length = 616

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 159/522 (30%), Positives = 275/522 (52%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + R+ L+ E I
Sbjct: 104 NLAPATPQWLESMGGSPMKLGLDLRGGVHFLMEVDMSEAIRKMTEAKIADFRTDLRGEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D+         +             +       + ++  +   
Sbjct: 164 RYAGIRNTPKGIEIKFRDAENLAKAERFLKSRTN--------EMVFVDASSGSDFMLLAN 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+  + QV   A++Q++  +R R++++G++E  +QR G+ RI+++LPG QD +R + +L
Sbjct: 216 MSEIYLKQVKEEALQQNITTLRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKDIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFM-----FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V                G +     +G +  ++ +V ++G H+ GA  +F
Sbjct: 276 GATASIEFHMVDEKADAAAIAAGRVSPGSQIYDRREGGKVALQKEVMLTGDHIQGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP--------------- 306
           D  + +P V I+ D  G   F  VT+DNIGKP+A +                        
Sbjct: 336 DEYS-RPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGAKNPDGSVKMDKIEEV 394

Query: 307 --VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
             V       G+  +        A  LA +LRAG+L   ++IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVINGLDHSEAQSLALLLRAGALIAPVSIVEERTIGPSLGAENIDNG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+ ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 LQAMIWGMAVVLIFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRAGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFTAI   R+++  I   K++K + I
Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKKLSI 616



 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 90/234 (38%), Gaps = 6/234 (2%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            S+++  I            +   +              +  +   ++   +I     +G
Sbjct: 384 GSVKMDKIEEVISVATIQARLGRNFVINGLDHSEAQSLALLLRAGALIAPVSIVEERTIG 443

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIE 717
           P +  E I  G+  +I     +LI++ + ++  F L A   L  ++   +G  ++  G  
Sbjct: 444 PSLGAENIDNGLQAMIWGMAVVLIFMLVYYR-GFGLIANLALTANLVMVVGVMSMIPGAV 502

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +            ++
Sbjct: 503 LTLPGIAGMVLTVGMAVDGNVLIYERIREELRA---GRSVQQAIHEGYGNAFSTIADANI 559

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
             F++ L +   G   +  FA+ +  GI  +  ++I     I+       R K 
Sbjct: 560 TTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAIWGGKRVKK 613


>gi|319764882|ref|YP_004128819.1| protein-export membrane protein secf [Alicycliphilus denitrificans
           BC]
 gi|330827087|ref|YP_004390390.1| protein-export membrane protein SecF [Alicycliphilus denitrificans
           K601]
 gi|317119443|gb|ADV01932.1| protein-export membrane protein SecF [Alicycliphilus denitrificans
           BC]
 gi|329312459|gb|AEB86874.1| protein-export membrane protein SecF [Alicycliphilus denitrificans
           K601]
          Length = 317

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 161/302 (53%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S +    ++  L T GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIKKDIPFMKYALVLNAVSFITFALAVFFLVTRGLHLSVEFTGGTVMEVAYAQTAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR  + +L   D+  QNF   ++ ++RL  Q G + AQ    E V   +    P  T
Sbjct: 61  IGKVRDKVAALGYPDVVVQNFGTSRDVMIRLPVQKGVTSAQQS--EQVLAALKSEDPGVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL+  G++ + +  + ++IY+ +RF+W F + AI   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGEELVHGGLMALGMVVLGIVIYLALRFEWKFGVAAIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +A VL ++GYSVN+ VV++DR+R+  + +   ++  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LNTHEVIDHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +    VL M  +GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|254506770|ref|ZP_05118910.1| protein-export membrane protein SecD [Vibrio parahaemolyticus 16]
 gi|219550351|gb|EED27336.1| protein-export membrane protein SecD [Vibrio parahaemolyticus 16]
          Length = 607

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 154/524 (29%), Positives = 276/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     N + LGLDLRGG H ++EVD D  +   +    +  RS L++  +
Sbjct: 93  NLAPATPDWLESIGANPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKL 152

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   ++         +           + D       +     ++ 
Sbjct: 153 RYRAIRPAGKDGVEVLLRNAEQLAEAEALLKKN--------HPDMIFVDSDSNGRFALTA 204

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 205 TFTEQRLTEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264

Query: 206 LGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G    +D DG   +++ +V + G  +    ++
Sbjct: 265 LGATATLEFREVDSQADLAAAVNGRAPAGSEIKQDRDGRPVVLKKRVILGGQSITD-ASS 323

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    +R NIGK +A V                       
Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMAAFSRQNIGKLMATVFAEYKDSGRRTPEGRVILNKHEE 383

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A++ G+V ++LF +V Y K+GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 444 MGIQAMIWGMVAVMLFTLVYYRKFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 503

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + IL SMFTAI   R ++      K++  + I
Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLAYGGKRINKLSI 607



 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 91/213 (42%), Gaps = 5/213 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI  +I   +A
Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQAMIWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMLFTLVYYR-KFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   I  FA
Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++ GI+ +  ++I     I+   Y  +  N 
Sbjct: 572 VTLSIGILTSMFTAIVGTRCIVNLAYGGKRINK 604


>gi|323491588|ref|ZP_08096767.1| preprotein translocase subunit SecD [Vibrio brasiliensis LMG 20546]
 gi|323314164|gb|EGA67249.1| preprotein translocase subunit SecD [Vibrio brasiliensis LMG 20546]
          Length = 607

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 156/524 (29%), Positives = 276/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L++E I
Sbjct: 93  NLAPATPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREEKI 152

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   +               Q V  + + D       +     +  
Sbjct: 153 RYRAIRPSGKDAVEVLLRNEEQLAEA--------QRVLEQNHPDMIFVDSASDGRFSLIA 204

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 205 TFTEQRLTEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264

Query: 206 LGTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G    +D DG   +++ +V + G  +    ++
Sbjct: 265 LGATATLEFREVDSKADLAAAASGRAPAGSEIKQDRDGRPVVLKKRVILGGSSITD-ASS 323

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    +R NIGK +A V                       
Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMAAFSRQNIGKLMATVFAEYKDSGRRTPEGKVILTKHEE 383

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A++ G+V ++LF ++ Y K+GL+A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 444 MGIQAMIWGMVAVMLFTLMYYRKFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIV 503

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  +S   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRSPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + IL SMFTAI   R ++      K++  + I
Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLAYGGKRINKLSI 607



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 91/213 (42%), Gaps = 5/213 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI  +I   +A
Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQAMIWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMLFTLMYYR-KFGLIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      S +  I +            ++   I+ + +   G   I  FA
Sbjct: 515 LIFERIREELRD---GRSPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++ GI+ +  ++I     I+   Y  +  N 
Sbjct: 572 VTLSIGILTSMFTAIVGTRCIVNLAYGGKRINK 604


>gi|148263781|ref|YP_001230487.1| preprotein translocase subunit SecF [Geobacter uraniireducens Rf4]
 gi|146397281|gb|ABQ25914.1| protein translocase subunit secF [Geobacter uraniireducens Rf4]
          Length = 302

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 144/297 (48%), Gaps = 5/297 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRP 588
             +     I F+  R     +S + SI  I  +        N GIDF GG  + +    P
Sbjct: 1   MELISKTKIDFIGMRKISFAVSAIISIIGIIGIIQIARGAANMGIDFSGGTAMQLKFTAP 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +     R +L    + D+  Q        L++++     +      ++ + KK     P 
Sbjct: 61  ITTEEARRSLAKNGVKDVDMQEIKEGNKLLIKMRKTTLATGKVADSVQDILKKEFPANPY 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           +   +TE +GP I  +L +  ++ V IS + +++YI  RF + F +GA+   + D+    
Sbjct: 121 TVESSTE-IGPSIGDKLRKDTLIAVAISMLGIILYIAWRFDFKFGVGAVVATMHDVLAIF 179

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F +   E NL  + AVLT+ GYS+ D VVV+DR+R+N+       S   + +KSINE 
Sbjct: 180 AVFFVLNKEVNLLLITAVLTIAGYSLTDTVVVFDRIRENLHKNMK-ESMPTVFNKSINEV 238

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           L R++ TS+  F++   + ++GG VI  FA  +  G+VV   SSIF+A+PI+     
Sbjct: 239 LSRTIITSLTTFLAATSLFLFGGDVIHDFAFALVVGVVVGTYSSIFVASPIVALWEK 295


>gi|315634697|ref|ZP_07889981.1| protein-export membrane protein SecD [Aggregatibacter segnis ATCC
           33393]
 gi|315476645|gb|EFU67393.1| protein-export membrane protein SecD [Aggregatibacter segnis ATCC
           33393]
          Length = 616

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 164/524 (31%), Positives = 281/524 (53%), Gaps = 39/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE  
Sbjct: 104 NLAPATPKWLSSIGGNPMKWGLDLRGGVRFLMEVDMNSALTKRQEQLQDSLRTELRKEKY 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              +++  +N    +S  +              L  V   L        +   ++  +S+
Sbjct: 164 QYSAIKSAENFSTIVSLVNPEQ-----------LSDVQRYLRKQHPTLDIRAISDNTLSL 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS   +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+++LPG QD +R +++
Sbjct: 213 ALSDAALNEARESAIEQNLSILRKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N + +    G+         D +    ++  +  + G H+  A++ 
Sbjct: 273 LGATATLEFRLVNGNANLEAAARGMVTSDSEVKYDRNNRPIVLYKRAVLGGEHITNASSG 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D  T +P V ++ D  G     + TR NI KP+A +      +                
Sbjct: 333 VDQNTSRPQVSVTLDSEGGEIMSQTTRANIQKPMATLYVEYKDSGKKDENGKTILQKHEE 392

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q     + QI+G  +   A  LA +LR+G+L   + IVEER +G  LG+ ++ 
Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVE 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A   GL+++V FM++ Y K+GL+A+ ++  N++L + L+SLL  ATLT+P IAGIV
Sbjct: 453 QGLQASFWGLMIVVAFMVIYYRKFGLIANVALIANIVLLVGLMSLLPGATLTMPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G++VD+N+L+ ERI+EE R  + V  ++  G+S A+S+IFD+N+T ++  V L+  G
Sbjct: 513 LAVGMSVDANVLIFERIKEEIRNGRPVQQAISEGYSGAFSSIFDANLTTILTAVALYAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G ++GFAIT+ L I ISMFTAI+  RA++ F+   K++  + I
Sbjct: 573 TGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKRIDKLSI 616



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 80/174 (45%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +G+       + ++ ++ I ++  F L A   LI +I   +G  +L  
Sbjct: 441 TIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYR-KFGLIANVALIANIVLLVGLMSLLP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +G SV+  V++++R+++ ++        +  I +  +        
Sbjct: 500 GATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIR---NGRPVQQAISEGYSGAFSSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   ++ + +   G   I  FAI ++ GI ++  ++I     I+ F+Y  + 
Sbjct: 557 ANLTTILTAVALYAVGTGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKR 610



 Score = 46.2 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   +  IG+L ALPN   +    +                RG         
Sbjct: 4   RYPLWKNLMVIFLVAIGILYALPNLYGEDPAVQISGT------------RG--------- 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         E+++ LK+  +   S+      I + F ++  +    DK+T  L
Sbjct: 43  -----QEANSSVLSEVQTVLKENNLATKSIVLENGSILVRFNNTDNQLLAKDKITEKL 95


>gi|221069819|ref|ZP_03545924.1| protein-export membrane protein SecF [Comamonas testosteroni KF-1]
 gi|220714842|gb|EED70210.1| protein-export membrane protein SecF [Comamonas testosteroni KF-1]
          Length = 318

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS +    ++  LF+ GL+  ++F GG  + V   +P D
Sbjct: 1   MEFFRIKKDIPFMRYALVFNAISFITFALAVFFLFSRGLHLSVEFTGGTVMEVAYTQPAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR  +  L   D+  QNF   K+ ++RL  Q G + AQ    E V   +       T
Sbjct: 61  IGKVRETVSKLGYADVIVQNFGTSKDVMIRLPVQKGVTTAQQS--EQVITALKAEDAEVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL+  G++ + +  + ++IY+  RF+W F + AI   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGDELMHNGLMALGMVVLGIIIYLAFRFEWKFGVAAIIANLHDVIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +A VL ++GYSVN+ VV++DR+R+  + +   +S  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LSTHEVIDHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +    VL M  +GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|317047146|ref|YP_004114794.1| protein-export membrane protein SecF [Pantoea sp. At-9b]
 gi|316948763|gb|ADU68238.1| protein-export membrane protein SecF [Pantoea sp. At-9b]
          Length = 322

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 161/301 (53%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L      I FMR       IS L  + SI ++   G N+G+DF GG  + +   +
Sbjct: 5   YNIEQLNHGRKVIDFMRWDTLAFIISGLLIVASIAIVGVRGFNWGLDFTGGTVIEINLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P +L  +R  L      +   QNF   ++ +VR+    G    Q    ++V         
Sbjct: 65  PAELDTLREALVKAGFQEPLVQNFGSSRDVMVRMAPVQG-PAGQELGNKVVSVINETAQQ 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+LIYI IRF+W  ALG +  L  D+  T
Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGAMALLSALIAILIYIGIRFEWRLALGTVLALAHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  AL  IE +LT VA+++++IGYS+NDK+VV DR+R+N +      S+ D+ + S+ +
Sbjct: 184 CGILALTHIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS+     +L + ++GG+++  F++ M  G+ +   SSI++++ + L +   R
Sbjct: 243 TLSRTLITSLTTLAMILILFIFGGALLKGFSLTMLIGVTIGTVSSIYVSSALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|186477276|ref|YP_001858746.1| preprotein translocase subunit SecF [Burkholderia phymatum STM815]
 gi|184193735|gb|ACC71700.1| protein-export membrane protein SecF [Burkholderia phymatum STM815]
          Length = 316

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 90/297 (30%), Positives = 154/297 (51%), Gaps = 3/297 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS+L  I ++  L   GL+  ++F GG  + V     V 
Sbjct: 1   MEFFRIRKDIPFMQRALVFNAISLLTFIAAVFFLLHRGLHLSVEFTGGTVIEVQYPGAVP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  L  +  GD   QNF   ++ L+RL  + G + AQ    + V   +      + 
Sbjct: 61  LEPVRDTLTRIGYGDAQVQNFGTSRDVLIRLPLKQGLTSAQQS--DQVMASLKGQDANAK 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +      ++IY+  RF+W +A+  +   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVAGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     +S  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKLSVIEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           R++ T     + VL M ++GG  +  FA+ +  GI+    SS+F+AA + ++    R
Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKR 294


>gi|170718437|ref|YP_001783655.1| preprotein translocase subunit SecD [Haemophilus somnus 2336]
 gi|168826566|gb|ACA31937.1| protein-export membrane protein SecD [Haemophilus somnus 2336]
          Length = 616

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 159/524 (30%), Positives = 285/524 (54%), Gaps = 39/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       +  GLDLRGG   ++EVD    ++   +   D LR+ L+KE  
Sbjct: 104 NLAPATPKWLTNIGGRPMKWGLDLRGGVRFLMEVDMHTALDKRQEQLQDSLRTELRKEKY 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+R  +N    ++ A      ++   +    Q +N           +   +E  +S+
Sbjct: 164 QYTSIRNGENFTTLITLAKPEQLSDVQRFLRKQHQNLN-----------VNAISENTLSL 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS+N + ++  HAIEQ++ I+R+R++++G++E  IQR G+ RI+++LPG QD +R +++
Sbjct: 213 ELSENALREIRDHAIEQNLSILRRRVEELGVAEPVIQRQGAERIVVELPGVQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N +    + G+         D +G+  ++  +  + G H+  A++ 
Sbjct: 273 LGATATLEFRLVNQNANLDVALKGMVPSDSEVKYDRNGSPIVLYRRAVLGGEHITNASSG 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D  T  P V ++ D  G     + T+ N+ KP+A +      +                
Sbjct: 333 IDQNTGSPQVSVTLDSEGGEIMSQTTKLNLKKPMATLYVEYKDSGKKDEHGKTILAKHEE 392

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q     + QI+G  +   A  L+ +LR+G+L   + I+EER VG  LG+ ++ 
Sbjct: 393 VINVATIQGRFGSQFQITGINSPAEAQNLSVLLRSGALTAPIQIIEERTVGPSLGAQNVE 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GL + ++F++  Y  +GL A  ++  N+IL + ++SLL  ATLT+P IAGIV
Sbjct: 453 QGLKAGLWGLAITIIFILFYYKLFGLFAGIALIANMILLVGIMSLLPGATLTMPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G++VD+N+L+ ERI+EE    +++  +++ G+S A+++IFD+N+T ++ +VVL+  G
Sbjct: 513 LSVGMSVDANVLIFERIKEEINNGRTIQQAINEGYSGAFTSIFDANLTTILTSVVLYAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G V+GFAIT+ L + ISMFTAI+  R ++  I   K+++ + I
Sbjct: 573 TGPVKGFAITLSLGVAISMFTAITGTRFLVNLIYGGKRVEKLSI 616



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 78/172 (45%), Gaps = 5/172 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP +  + + +G+   +      +I+I   +K  F L A   LI ++   +G  +L  G 
Sbjct: 443 GPSLGAQNVEQGLKAGLWGLAITIIFILFYYKL-FGLFAGIALIANMILLVGIMSLLPGA 501

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              +  +A ++  +G SV+  V++++R+++ +       + +  I++  +         +
Sbjct: 502 TLTMPGIAGIVLSVGMSVDANVLIFERIKEEI---NNGRTIQQAINEGYSGAFTSIFDAN 558

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   ++ + +   G   +  FAI ++ G+ ++  ++I     ++  IY  + 
Sbjct: 559 LTTILTSVVLYAVGTGPVKGFAITLSLGVAISMFTAITGTRFLVNLIYGGKR 610



 Score = 40.8 bits (93), Expect = 0.97,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 30/133 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  IG+L +LPN   +    +                  G+       
Sbjct: 4   RYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQI----------------SGTR----GQ 43

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF----KENIADKVTL 117
             D            +++ L++  + + S+      I   F ++      K+ I +++  
Sbjct: 44  TADI------NVLTNVQTLLEQNNLPIKSIILENGSILARFNNTDDQLLAKDKIIEQLGN 97

Query: 118 FLQGVNSKLNVDP 130
                 +     P
Sbjct: 98  NYSVALNLAPATP 110


>gi|251790675|ref|YP_003005396.1| preprotein translocase subunit SecD [Dickeya zeae Ech1591]
 gi|247539296|gb|ACT07917.1| protein-export membrane protein SecD [Dickeya zeae Ech1591]
          Length = 604

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 172/537 (32%), Positives = 291/537 (54%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L           +    + LGLDLRGG H ++EVD D  +    +  
Sbjct: 89  VVALNLAPATPTWLR---------VLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LRS L+++GI   S+R+  N  + + F DS+ ++N  +            L    + 
Sbjct: 140 MDSLRSELREKGIQYASVRKSDNYGVEILFRDSQPRDNAVN-----------YLTPRHRD 188

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ ++    +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++
Sbjct: 189 LVISSSGNDTLRAVMSDVRLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVE 248

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            DG    +  +V
Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDPVAMSNGRVPGDTEVMNMRDGGPIALFKRV 308

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T+  + + ++P V+IS D  G       T+ N+GKP+A +      +   
Sbjct: 309 ILTGDHITDSTS-GNDEYNRPQVNISLDSAGGNLMLNFTKGNVGKPMATLFVEYKDSGKK 367

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 368 DANGRAILEKQEEVINVATIQSPLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEE 427

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG  +I +G  A +AGL + +LFMI  Y K+G++A  ++ LN++L + ++SLL 
Sbjct: 428 RTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYKKFGMIATSALLLNLVLVVGVMSLLP 487

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE    +SV  ++D G+  A+S+IFD+N+
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANV 547

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 548 TTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 604



 Score =  119 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 76/177 (42%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++   +K  F + A + L+L++   +G  +L  
Sbjct: 429 TIGPTLGMQNITQGLEACLAGLAVSILFMIFFYK-KFGMIATSALLLNLVLVVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  ID+           
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYRGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 545 ANVTTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKK 601


>gi|82703541|ref|YP_413107.1| preprotein translocase subunit SecF [Nitrosospira multiformis ATCC
           25196]
 gi|82411606|gb|ABB75715.1| protein translocase subunit secF [Nitrosospira multiformis ATCC
           25196]
          Length = 310

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 165/302 (54%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM    +   IS++  I ++  L T GLN G+DF GG  + V   +P D
Sbjct: 1   MEFFRFKRDIPFMSWGKYTTAISLVTFIAAVFFLVTKGLNLGVDFTGGTVMEVSYTQPAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +R  L  L + D S QNF   ++ L+RL  +   S A  ++ E V   +      + 
Sbjct: 61  LNRIRGTLIKLGMADASVQNFGTSRDVLIRLPAKADMSSA--KLSETVIAALHADDETAE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL+  G + ++I ++ ++ Y+ +RF+W F +  I   + D+   LGF
Sbjct: 119 LRRVEFVGPQVGKELVENGALALLIVSLGIVAYLAMRFEWKFGVSGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+LT +AA+L ++GYSVN+ VVV+DR+R+N +      S   +ID +I  T+ 
Sbjct: 179 FAFFQWEFSLTVLAAILAILGYSVNESVVVFDRIRENFRKM-RRASVAQVIDNAITRTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + V+ M ++GG  +  FA+ +  GI+    SS+ +A+P+L+ +   R   
Sbjct: 238 RTIITHGSTQMVVVSMLLFGGESLHYFALALTIGILFGIYSSVLVASPLLMLLGVSRKDI 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|145218833|ref|YP_001129542.1| preprotein translocase subunit SecF [Prosthecochloris vibrioformis
           DSM 265]
 gi|145204997|gb|ABP36040.1| protein translocase subunit secF [Chlorobium phaeovibrioides DSM
           265]
          Length = 311

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 144/309 (46%), Gaps = 11/309 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I    +I F+  R     IS+L  +  +  L   GLNYGIDF+GG ++ +   + V +
Sbjct: 1   MRIFSNTSIDFLGRRKIAYAISLLLLLTGLVSLAVRGLNYGIDFRGGSEVVLRFEQDVPV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +RS +    +     Q      +    L         + + L               I
Sbjct: 61  GELRSVMRDAGVSGTIKQY---GMDRSFLLSTVFNGDTNELKSLISGALNSQLKGNPFEI 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP I+ +L       +  + +A+LIY+ IRF+  FA   +  +  D+   LG F
Sbjct: 118 VRIDAVGPSIASDLKWSAFKAMGAALLAILIYVGIRFELKFAAAGVVAIFHDVLIVLGLF 177

Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           +L G       +E + + +AA LT+ GYS+ D VVVYDR+R+N++       +  + ++S
Sbjct: 178 SLLGGVFEVMPLEMDQSIIAAFLTIAGYSITDTVVVYDRIRENIR-NRKPSEYEQIFNES 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +N TL R++ TS    ++VL + ++ G  I +FA  +  GI+V   SS+F+AAP+     
Sbjct: 237 MNRTLSRTIITSCTTLLTVLVLFIFAGPAIRAFAFAVFAGILVGTYSSVFVAAPLAFEWI 296

Query: 825 DWRAKNARI 833
                  ++
Sbjct: 297 KRSKAPVKL 305


>gi|237800023|ref|ZP_04588484.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022878|gb|EGI02935.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 303

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 162/286 (56%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         + +     + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKSGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  ++++ + V+GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIVALWVFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|320540312|ref|ZP_08039964.1| putative SecYEG protein translocase auxillary subunit [Serratia
           symbiotica str. Tucson]
 gi|320029632|gb|EFW11659.1| putative SecYEG protein translocase auxillary subunit [Serratia
           symbiotica str. Tucson]
          Length = 600

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 168/534 (31%), Positives = 288/534 (53%), Gaps = 42/534 (7%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P++L     +          + LGLDLRGG H ++EVD +  +    + 
Sbjct: 88  FVVALNLAPATPSWLVMLGAE---------PMKLGLDLRGGVHFLMEVDMNTALGKLQEQ 138

Query: 73  YSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+++GI   S+R+   N + + F D   ++              S +    +
Sbjct: 139 TMDTLRSELREKGIPYASIRKLSNNGVEVHFRDDATRDKAI-----------SYMGPRQR 187

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             +L +     +   LS   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI++
Sbjct: 188 DLVLSSNGSNTLKANLSDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGTDRIVV 247

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-SDGNQYLVEDKVEIS 250
           +LPG QD +R +++LG TA + F  V    +  G + G   ++   DG+  ++  +V ++
Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNTTAAASGRVPGDSEVKYTRDGHPIVLYKRVILT 307

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306
           G H+  +T++ D    +P V+IS D  G       T+DNIGKP++ +      +      
Sbjct: 308 GNHITDSTSSTDEYN-QPQVNISLDSAGGTSMSNFTKDNIGKPMSTLFVEYKDSGKKDAN 366

Query: 307 --------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                            Q+      +I+G      A  LA +LRAG+L   + IVEER +
Sbjct: 367 GRAVLVKQEEVINVANIQSRLGNSFRITGIGNANEARQLALLLRAGALIAPIQIVEERTI 426

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-AT 411
           G  LG  +I +G  A + GLV  ++FM+  Y K+G++A  ++  N++L + ++SLL  AT
Sbjct: 427 GPTLGQQNIAQGLEACLWGLVASIIFMVAWYRKFGMIATTALVANLVLIVGVMSLLPGAT 486

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LT+P IAGIVL + +AVD+N+L+NERI+EE +  +SV  ++  G+  A+S+I D+NIT L
Sbjct: 487 LTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSVQQAIHEGYKGAFSSIVDANITTL 546

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           I  V+L+  G G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 547 ITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 600



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 99/253 (39%), Gaps = 5/253 (1%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +  L     D     +N  ++ +      N    ++ L       G   A       + 
Sbjct: 349 PMSTLFVEYKDSGKKDANGRAVLVKQEEVINVANIQSRLGNSFRITGIGNANEARQLALL 408

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +   ++    I     +GP + ++ I +G+   +   +A +I++   ++  F + A T 
Sbjct: 409 LRAGALIAPIQIVEERTIGPTLGQQNIAQGLEACLWGLVASIIFMVAWYR-KFGMIATTA 467

Query: 700 LILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           L+ ++   +G  +L  G    +  +A ++  +  +V+  V++ +R+++ +K      S +
Sbjct: 468 LVANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSVQ 524

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             I +         V  ++   I+ + +   G   I  FAI  A G+  +  ++I     
Sbjct: 525 QAIHEGYKGAFSSIVDANITTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRA 584

Query: 819 ILLFIYDWRAKNA 831
           I+  +Y  +  N 
Sbjct: 585 IVNLLYGGKRINK 597


>gi|312962922|ref|ZP_07777409.1| protein-export membrane protein SecF [Pseudomonas fluorescens WH6]
 gi|311282949|gb|EFQ61543.1| protein-export membrane protein SecF [Pseudomonas fluorescens WH6]
          Length = 304

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/286 (30%), Positives = 163/286 (56%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R    G ++L ++ ++   F  GLNYG+DF GG  + +   +P D+++VR+ 
Sbjct: 3   RTINFMGVRNIAFGATVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEKPADVTLVRNE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L      +   Q+F    + LVR+  +      Q                 ++++  E V
Sbjct: 63  LVKAGYHEAIVQSFGATTDLLVRMPGEDPQLGHQVAEALQ----KVGGDNPASVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++ + ++IY+  RF+W F +GAI +LI D+  T+G  A F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVIVTVGILAYFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     +  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ATLIENINISTTQTLLRTMATSI 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  +++  + ++GG  +  F++ +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWL 283


>gi|307728501|ref|YP_003905725.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1003]
 gi|307583036|gb|ADN56434.1| protein-export membrane protein SecF [Burkholderia sp. CCGE1003]
          Length = 316

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 154/302 (50%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS+L  + ++  L   GL+  ++F GG  + V       
Sbjct: 1   MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLLHRGLHLSVEFTGGTVIEVQYPGAAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  L  L   D   QNF   ++ L+RL  + G + AQ    + V   +    P   
Sbjct: 61  LDPVRGTLNRLGYADAQVQNFGTSRDVLIRLPLKQGLTSAQQS--DQVMSALKTDTPQVQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +    + ++IY+  RF+W +A+  +   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVVGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVIEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T     + VL M ++GG  +  FA+ +  GI+    SS+F+AA + ++    R   
Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|296115191|ref|ZP_06833832.1| bifunctional preprotein translocase subunit SecD/SecF
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295978292|gb|EFG85029.1| bifunctional preprotein translocase subunit SecD/SecF
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 509

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 198/517 (38%), Positives = 307/517 (59%), Gaps = 15/517 (2%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
              IC IGL + LPNF+ Q         +P  ++ LGLDLRGGS+L+L+VD +   +  L
Sbjct: 4   VIGICLIGLALCLPNFMRQPAQS-----IPWRQVHLGLDLRGGSYLLLQVDMNSVTSDRL 58

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
           +  +DE R  L K G+G  ++    + +T +       E     +        +     P
Sbjct: 59  RTLTDETRQTLLKGGLGYRNLTTGTHAVTFAPRAPAEAEADLKALR-------AMPMNVP 111

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
            +  +  T +  IS+ LS     Q    AI QS+EI+R+RID  G  +  I R G  RI+
Sbjct: 112 SEFTVTQTPDGLISVALSDEASHQRARDAITQSIEIVRRRIDATGAIDPQITRQGEDRII 171

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---FLRDSDGNQYLVEDKV 247
           ++LPG  DP R++ LLGTTAKM+FH V  +               + ++      +   V
Sbjct: 172 VELPGISDPERVKHLLGTTAKMTFHLVADSAIGSAVPPPGVTIVPMSETSQGTLPIYTHV 231

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           ++ G  L  A+A+ D ++ +  V+ +FD +GAR+F EVTR N+GK  A+VLD +V+ APV
Sbjct: 232 DVDGADLTNASASIDQQSGEWAVNFTFDSVGARQFGEVTRANVGKRFAIVLDNKVIEAPV 291

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           I  AI  G  QI+G F+ + A  +A +LRAG+LP  LN++E+R++G  LG+DSI  G  +
Sbjct: 292 IRTAITGGSGQITGGFSAQQATDMALLLRAGALPAPLNVIEQRSIGPSLGADSIRAGAMS 351

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           ++AGLVL++ FM + YG++G  A+ ++  N++L +A+LS+  ATLTLP +AG++L +G+A
Sbjct: 352 LLAGLVLVIAFMALFYGRFGWYANIALMANLVLMIAILSMFEATLTLPGMAGMLLTLGMA 411

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+NIL+NERIREE  + ++   ++  GF RA STI DSN TAL+A V+LF FG G V+G
Sbjct: 412 VDANILINERIREEIARGRTALQAMQAGFERATSTIIDSNATALLAHVMLFVFGTGPVKG 471

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           FA+T+ + I+ ++FT + + R +M+      +   + 
Sbjct: 472 FALTITIGIVTTLFTTLVLSRMLMVRWYARTRPTVLP 508



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 83/201 (41%), Gaps = 4/201 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            AQ      +  +   +     +     +GP +  + IR G + ++   + ++ ++ + +
Sbjct: 308 SAQQATDMALLLRAGALPAPLNVIEQRSIGPSLGADSIRAGAMSLLAGLVLVIAFMALFY 367

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              F   A   L+ ++   +   ++F     L  +A +L  +G +V+  +++ +R+R+ +
Sbjct: 368 G-RFGWYANIALMANLVLMIAILSMFEATLTLPGMAGMLLTLGMAVDANILINERIREEI 426

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                  +    +           + ++  A ++ + + V+G   +  FA+ +  GIV  
Sbjct: 427 A---RGRTALQAMQAGFERATSTIIDSNATALLAHVMLFVFGTGPVKGFALTITIGIVTT 483

Query: 809 ASSSIFIAAPILLFIYDWRAK 829
             +++ ++  +++  Y     
Sbjct: 484 LFTTLVLSRMLMVRWYARTRP 504


>gi|84517342|ref|ZP_01004696.1| protein-export membrane protein SecD [Loktanella vestfoldensis
           SKA53]
 gi|84508822|gb|EAQ05285.1| protein-export membrane protein SecD [Loktanella vestfoldensis
           SKA53]
          Length = 543

 Score =  209 bits (532), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 195/543 (35%), Positives = 301/543 (55%), Gaps = 31/543 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSM----------------------LDRFPSAMPKNRISLG 47
           +  +   +GL++ALPN     +                         +PS +P   ++LG
Sbjct: 1   MIWLTVVVGLMLALPNGFYSRVEVANDARALIATGQTSAALEHDAGLWPSFLPSTLVNLG 60

Query: 48  LDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ---NKITLSFAD 104
           LDLRGG+HL++EV   D    FL+ +  ++R  L  E   V  + + +   +++ +  +D
Sbjct: 61  LDLRGGAHLLVEVAVQDVHASFLEGFWPQVRDVLAAERDVVGFVTREEGPASELRVRISD 120

Query: 105 SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
           +       + V    + V S        N+ V      ++I +++  +  +    + Q++
Sbjct: 121 AAGAARAFELVRGLGRPVTSFTGAAAS-NIDVRINGTLLTITINEAEMSAMNERTMLQTL 179

Query: 165 EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF----HKVLPN 220
           EIIR+RID++G  E TIQR G  R+L+Q+PG      ++ LLGTTA+++F     +    
Sbjct: 180 EIIRRRIDEVGTREPTIQRQGLERVLVQVPGVGSAQEIKDLLGTTAQLTFNPVVARTSNA 239

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
           N   G    +    D  G  Y++E +  ++G  L  A  +FD    +  V   F+   AR
Sbjct: 240 NQSPGTGNFLVPSLDDPGLFYILERRPVVTGEQLENAQLDFDQNG-RAAVGFRFNTSAAR 298

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
            F + T  NIG P A+VLD  V++AP I   IP G   I+GNFT E A  LA +LRAG+L
Sbjct: 299 VFGDYTLANIGSPFAIVLDNEVISAPTIQSHIPGGSGIITGNFTTEEATNLAVLLRAGAL 358

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P +L  +EER +G +LG DSI  G  A + G +L+VLFM + YG +G  A+ ++ +N+ L
Sbjct: 359 PAELTFLEERTIGPELGQDSIDAGRLAALVGGLLVVLFMGLSYGLFGWFANTALVINLGL 418

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
              +LSL+GATLTLP IAGIVL +G+AVD+N+LV ERIREE +  +    ++++G+ RA 
Sbjct: 419 IFGVLSLVGATLTLPGIAGIVLTVGMAVDANVLVFERIREELKTAKGPARAIELGYERAL 478

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           S I DSN T  +  V+LF  G G VRGFAIT+GL I+ S+FTAI + R+++     Y++ 
Sbjct: 479 SAITDSNFTTFMVAVILFALGSGPVRGFAITLGLGIITSVFTAIFVTRSLISIWFAYRRP 538

Query: 521 KSI 523
           K+I
Sbjct: 539 KTI 541



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 84/175 (48%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G +  ++  + +++++ + +   F   A T L++++    G  +L G
Sbjct: 369 TIGPELGQDSIDAGRLAALVGGLLVVLFMGLSYGL-FGWFANTALVINLGLIFGVLSLVG 427

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V+V++R+R+ +K   T+      I+      L     +
Sbjct: 428 ATLTLPGIAGIVLTVGMAVDANVLVFERIREELK---TAKGPARAIELGYERALSAITDS 484

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +   F+  + +   G   +  FAI +  GI+ +  ++IF+   ++   + +R   
Sbjct: 485 NFTTFMVAVILFALGSGPVRGFAITLGLGIITSVFTAIFVTRSLISIWFAYRRPK 539


>gi|34557612|ref|NP_907427.1| preprotein translocase subunit SecF [Wolinella succinogenes DSM
           1740]
 gi|34483329|emb|CAE10327.1| PROTEIN-EXPORT MEMBRANE PROTEIN SECF [Wolinella succinogenes]
          Length = 323

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 87/294 (29%), Positives = 165/294 (56%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L  +     F+    +   +S+L    S+ L FT G++YGIDF GG  + V       
Sbjct: 1   MELFKNDKVYDFVAWGRYTSLLSLLLLALSLGLFFTKGISYGIDFTGGSVVQVQYKEAAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  L   +I   +  +  G K   +     P  + +  R +  +  ++ +      
Sbjct: 61  LGKIREALAGNEIFKGAQVSEFGSKEEALI--KVPASTSSVARDIGDIAAEVLQGTGNFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  ++VGPK+  EL  KG + +++++I ML+Y+  R++W FA+ A+  L+ D+T  +G 
Sbjct: 119 VRRVDMVGPKVGDELRTKGTLALVLASIGMLLYVAFRYEWRFAIAAVLALVHDVTIAVGA 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF ++F L  VAA+LTLIGYS+ND ++++DR+R+ +       + ++++++++++TL 
Sbjct: 179 IVLFEVDFGLDVVAALLTLIGYSINDTIIIFDRIRERL-QGNKLDTLKEVMNEAVSKTLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  V  +  +GG +I  F++PM  G+VV + SS+FIA  I++++ 
Sbjct: 238 RTILTSLTVFFVVFTLYAFGGEIIRGFSLPMLVGVVVGSYSSVFIAMQIVIWLG 291


>gi|258619941|ref|ZP_05714981.1| protein-export membrane protein SecD [Vibrio mimicus VM573]
 gi|258587674|gb|EEW12383.1| protein-export membrane protein SecD [Vibrio mimicus VM573]
          Length = 617

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 152/523 (29%), Positives = 276/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 104 NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEESFRSDLRDEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       T     +   
Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLSQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 395 INQATIQSALGRNFRITGIDSPSEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRINKLSI 617



 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPSEAHNLALLLRAGA 430

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLM 606

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 607 YGGKRINK 614



 Score = 39.3 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++      I  L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVMFTIAIAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D + S L K  +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTSALDKAHLSKKSIALENGSILVRFNDTDTQISARDIISEAL 95


>gi|315645796|ref|ZP_07898917.1| protein-export membrane protein SecF [Paenibacillus vortex V453]
 gi|315278557|gb|EFU41871.1| protein-export membrane protein SecF [Paenibacillus vortex V453]
          Length = 305

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 93/299 (31%), Positives = 161/299 (53%), Gaps = 9/299 (3%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  F+    +   +SI  +I  +  L T GLNYG+DF+ G  + +  ++P+    +
Sbjct: 1   MSFKKYDFVSKSRFFYILSIAITILGLVFLLTRGLNYGVDFQSGSNVDISLSKPLTTEQI 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            S L    IG+ +      +       +     S   T   ++  +   E +  +     
Sbjct: 61  ESVLAEAGIGEDASVTPGND-------RVNIRFSQVLTEDQDLKLRSGIEKLDDTATFEI 113

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             V P++++EL R  I  V++S I ++IY+ IRF+W FA+ AI  L+ D    +  F++ 
Sbjct: 114 NTVDPEMAKELGRNAIYAVLLSCIGIIIYVSIRFEWRFAIAAIVALLHDAFVVISIFSIL 173

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRS 772
           G+E +LT + AVLT+IGYS+ND +V++DR+R+N++      S   +DL++KS+++TLGRS
Sbjct: 174 GLEVDLTFIIAVLTIIGYSINDTIVIFDRIRENLRFAKIKRSSDLKDLVNKSLHQTLGRS 233

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +YT+++ FI+   M + GG  I  F++ +  G+   A SSIFIA+P+ L +      N 
Sbjct: 234 IYTALSVFIAAFFMLLLGGESIQMFSLAICIGLAFGAYSSIFIASPLWLVLKKRNVSNK 292


>gi|78065283|ref|YP_368052.1| preprotein translocase subunit SecF [Burkholderia sp. 383]
 gi|77966028|gb|ABB07408.1| protein translocase subunit secF [Burkholderia sp. 383]
          Length = 316

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  LF  GL+  ++F GG  + V   +  +
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   +N L+RLQ + G + AQ    + V   +    P  T
Sbjct: 61  LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMGALKAQSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+  RF+W +A+  I   + DI   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDIVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA+L ++GYSVN+ VV++DR+R+  +     +S +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|17547435|ref|NP_520837.1| preprotein translocase subunit SecF [Ralstonia solanacearum
           GMI1000]
 gi|17429738|emb|CAD16423.1| probable-export membrane transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 322

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 162/305 (53%), Gaps = 4/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S L  + ++  LF +GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIRRDIPFMKHALAFNAVSFLTFLAAVFFLFHNGLHLSVEFTGGTVMEVAYTQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L  VR+++E L   D   QNF    + ++RL  + G      A     + V   +    P
Sbjct: 61  LPKVRADVEKLGYADAQVQNFGTSHDVMIRLPLKNGPDGKPIASAVQSQQVMSSLIATTP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q  E VGP++ +EL   G++ ++   I ++IY+ IRF+W FA+  I   + DI   
Sbjct: 121 DVKLQRVEFVGPQVGKELATDGLLALLFVVIGIVIYLSIRFEWKFAVAGIIANLHDIVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  + Y   ++  ++ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MNTHEVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +  + VL M V+GG  +  FA+ +  GI+    SS+F+AA + +++   R
Sbjct: 240 TISRTIITHGSTEMMVLSMLVFGGPTLHYFALALTIGILFGIYSSVFVAAALCMWLGVKR 299

Query: 828 AKNAR 832
               +
Sbjct: 300 EDLVK 304


>gi|212634515|ref|YP_002311040.1| preprotein translocase subunit SecD [Shewanella piezotolerans WP3]
 gi|212555999|gb|ACJ28453.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Shewanella piezotolerans WP3]
          Length = 610

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 155/522 (29%), Positives = 267/522 (51%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + V    +    + R+ L+ E I
Sbjct: 98  NLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVDMGEAVRKMTEAKVADFRTDLRAERI 157

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D+    N    +           + D       T ++  +   
Sbjct: 158 RYAGIRNGARGIEIKFRDAETLANAERFLKSR--------SADMVFTDRSTGSDYFLVAN 209

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            S   + Q+   A++Q++  +R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 210 PSDVYLKQIKEEALQQNITTLRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 269

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
             TA + FH V  N   +         G    +  +G   +++  V ++G H+       
Sbjct: 270 SATASIEFHMVDQNADVQAAASGRVPAGSELYQRREGGPVVLKKAVMLTGDHI-QGAQPS 328

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
             +  +P V I+ D  G   F  VT+DNIG P+A +      T           K     
Sbjct: 329 YDEYSRPQVSINLDSKGGSIFSNVTKDNIGNPMATLFIEYKDTGEKNADGSVKMKKIEEV 388

Query: 322 NFTI-----------------ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                  +  LA +LRAG+L   + IVEER +G  LG+++I  G
Sbjct: 389 ISVATIQARLGRNFVITGLGHAESQNLALLLRAGALIAPVYIVEERTIGPSLGAENIENG 448

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+ +++LFM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 449 MQAMIWGMAVVLLFMLVYYRGFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 508

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +S+  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 509 VGMAVDGNVLIYERIREELRNGRSIQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 568

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFT+I   R+++  I   K++K + I
Sbjct: 569 AVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKKLSI 610



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 91/238 (38%), Gaps = 6/238 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++   S+++  I            +   +              +  +   ++    I   
Sbjct: 374 KNADGSVKMKKIEEVISVATIQARLGRNFVITGLGHAESQNLALLLRAGALIAPVYIVEE 433

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +GP +  E I  G+  +I     +L+++ + ++  F L A   L  ++   +G  ++ 
Sbjct: 434 RTIGPSLGAENIENGMQAMIWGMAVVLLFMLVYYR-GFGLIANLALTANLVMVVGVMSMI 492

Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +          
Sbjct: 493 PGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSIQQAIHEGYGNAFSTIA 549

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
             ++  F++ L +   G   +  FA+ +  GI  +  +SI     I+       R K 
Sbjct: 550 DANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTSIVGTRSIVNAIWGGKRVKK 607


>gi|330975885|gb|EGH75951.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 303

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 161/286 (56%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIVSLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  ++++ + V+GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIVALWVFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|330815586|ref|YP_004359291.1| Protein export protein SecF [Burkholderia gladioli BSR3]
 gi|327367979|gb|AEA59335.1| Protein export protein SecF [Burkholderia gladioli BSR3]
          Length = 316

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 158/298 (53%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  L   GL+  ++F GG  L V   +  +
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLVHRGLHLSVEFTGGTVLEVQYQQAAE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L  GD   Q+F   +N L+RL  +PG + AQ    + V   +        
Sbjct: 61  LEPVRATLGKLGYGDAQVQSFGTSRNVLIRLALKPGLTSAQQS--DQVMAGLKAQNADVQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++ +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R 
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIRRE 295


>gi|134294792|ref|YP_001118527.1| preprotein translocase subunit SecF [Burkholderia vietnamiensis G4]
 gi|134137949|gb|ABO53692.1| protein translocase subunit secF [Burkholderia vietnamiensis G4]
          Length = 316

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 158/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  I ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFIAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  L  L   D   QNF   +N L+RLQ + G + AQ    + V   +    P  T
Sbjct: 61  LEPVRDTLGKLGYADAQVQNFGTSRNVLIRLQLKQGLTSAQQS--DQVMAALKAQSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA+L ++GYSVN+ VV++DR+R+  +     +S +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|322419802|ref|YP_004199025.1| protein-export membrane protein SecF [Geobacter sp. M18]
 gi|320126189|gb|ADW13749.1| protein-export membrane protein SecF [Geobacter sp. M18]
          Length = 300

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 85/297 (28%), Positives = 143/297 (48%), Gaps = 8/297 (2%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRP 588
             +     I F+  R      S + +I  I  +        N GIDF GG  + +   +P
Sbjct: 1   MELIKKTNIDFIGMRKVSFIASGIMAIIGILGIIAIARGTANMGIDFSGGTAMQIKFAQP 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                VR  L    + ++  Q   G    L+++    G S            K       
Sbjct: 61  ATTQAVRDALGKAGMKEVELQEITGGNQVLLKMHKTTGQSADSVAEA----LKQGMPSNP 116

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            T++++  +GP I  +L +  ++ V +S + +++YI  RF + F +GA+   + D+   +
Sbjct: 117 FTVESSTEIGPSIGEKLKKDTLIAVALSMLGIILYIAWRFDFKFGVGAVVATMHDVLAMV 176

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F L   E N+  + AVLT+ GYS+ D VVV+DR+R+NM           + +KSINET
Sbjct: 177 AVFYLMHREVNILFITAVLTIAGYSLTDTVVVFDRIRENMHKSLK-DPMITIFNKSINET 235

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           L R++ TS+  F++ + + ++GG VI  FA  +  G++VA  SSIF+A+PI+     
Sbjct: 236 LSRTIITSVTTFLAAVSLFLFGGEVIHDFAFALVVGVLVATYSSIFVASPIVALWEK 292


>gi|16759385|ref|NP_455002.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142844|ref|NP_806186.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62179019|ref|YP_215436.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161936225|ref|YP_151513.2| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|194451842|ref|YP_002044441.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194469839|ref|ZP_03075823.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194734472|ref|YP_002113440.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197300967|ref|ZP_02662577.2| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|198243006|ref|YP_002214361.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|204927281|ref|ZP_03218483.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205351719|ref|YP_002225520.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205357773|ref|ZP_02573352.2| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205358537|ref|ZP_02657436.2| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205358911|ref|ZP_02665159.2| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205359647|ref|ZP_02830985.2| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|207855889|ref|YP_002242540.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|67477420|sp|Q9ZFF8|SECD_SALCH RecName: Full=Protein-export membrane protein secD
 gi|25305917|pir||AG0552 protein-export membrane protein SecD [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501676|emb|CAD08863.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138476|gb|AAO70046.1| export membrane protein SecD [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|62126652|gb|AAX64355.1| preprotein translocase, IISP family, part of the channel
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|194410146|gb|ACF70365.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194456203|gb|EDX45042.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194709974|gb|ACF89195.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197289542|gb|EDY28905.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197937522|gb|ACH74855.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|204323946|gb|EDZ09141.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205271500|emb|CAR36318.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205329492|gb|EDZ16256.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205333358|gb|EDZ20122.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340218|gb|EDZ26982.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205344259|gb|EDZ31023.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206707692|emb|CAR31976.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245690|emb|CBG23486.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992117|gb|ACY87002.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157019|emb|CBW16502.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|320084683|emb|CBY94474.1| Protein-export membrane protein secD [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322713478|gb|EFZ05049.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323128725|gb|ADX16155.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326626752|gb|EGE33095.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332987355|gb|AEF06338.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 615

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 294/524 (56%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS+ ++              + L    +  ++ + +  ++  
Sbjct: 164 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 615



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  I++           
Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  + 
Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 609


>gi|317488550|ref|ZP_07947097.1| protein-export membrane protein SecF [Eggerthella sp. 1_3_56FAA]
 gi|316912355|gb|EFV33917.1| protein-export membrane protein SecF [Eggerthella sp. 1_3_56FAA]
          Length = 376

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 146/294 (49%), Gaps = 3/294 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I F+  R   +G++ +    S+ ++   GLN+GI+F GG  +   +   V+   +RS  +
Sbjct: 9   INFLGYRRVFLGVAAVLVCVSLAIVGVKGLNFGIEFVGGTSVSFHSTGDVNTEQMRSAFD 68

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                D   Q    + +    ++     +   T+    V  K+      +       +GP
Sbjct: 69  EAGEPDAVVQTTTADGDQGFLVRTTTTSAEEATQRANQVADKL---GLSTDSFEVTTIGP 125

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
                +I+  ++  ++S + ++IYI IRF++   + AI  L+ D+   +G +AL G E N
Sbjct: 126 DWGASVIQSSLIAFLVSIVLIIIYIAIRFEYKMGVTAIVALLHDLVLVMGVYALVGREVN 185

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
              +AA+LT++GYS+ D VVV+ R+  NM+      +F  + + SIN+ L R++ T++ +
Sbjct: 186 PNTIAALLTILGYSLYDTVVVFHRINDNMQSDDIKCTFMTMANHSINQVLVRTINTTLTS 245

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            I VL M ++GG  +  FA  M  G+V  + SSI +A+P+         +  ++
Sbjct: 246 LIPVLAMLLFGGETLKDFAFAMVIGLVCGSYSSIAVASPLYAMWKTREPRYQKL 299


>gi|289677971|ref|ZP_06498861.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           syringae FF5]
 gi|302185762|ref|ZP_07262435.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           syringae 642]
 gi|330895871|gb|EGH28157.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           japonica str. M301072PT]
 gi|330937003|gb|EGH41098.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 303

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 161/286 (56%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  ++++ + V+GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIVALWVFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|229592458|ref|YP_002874577.1| preprotein translocase subunit SecF [Pseudomonas fluorescens SBW25]
 gi|229364324|emb|CAY52074.1| protein-export membrane protein SecF [Pseudomonas fluorescens
           SBW25]
          Length = 304

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/286 (31%), Positives = 164/286 (57%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R    G+++L ++ ++   F  GLNYG+DF GG  + +   +P D+++VRS 
Sbjct: 3   RTINFMGVRNIAFGVTVLLTVLALFSWFHKGLNYGLDFTGGTLIELTYEKPADVTLVRSE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L      +   Q+F    + LVR+  +      Q                 ++++  E V
Sbjct: 63  LVKAGYHEAVVQSFGATTDLLVRMPGEDPQLGHQVAEALQ----KVGGDNPASVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++ + ++IY+  RF+W F +GAI +LI D+  T+G  A F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALVGIMIYLAFRFQWKFGVGAIVSLIHDVIVTVGILAYFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     +  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ATLVENINISTTQTLLRTMATSI 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  +++  + ++GG  +  F++ +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIAALMIFGGDNLWGFSLALFIGVLAGTYSSIYIANVVLIWL 283


>gi|221133853|ref|ZP_03560158.1| protein-export membrane protein SecF [Glaciecola sp. HTCC2999]
          Length = 313

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/279 (32%), Positives = 156/279 (55%), Gaps = 3/279 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+     ++FMR R   +  S +  I S+  L  + LN+G+DF GG  + V      +
Sbjct: 1   MRLLKINSTVKFMRLRVPALVFSTILIIASLGSLAVNQLNWGLDFTGGTLIEVGYPDAAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  L++   GD   QNF   ++ L+RL  + G   A   V + V   +        
Sbjct: 61  LDEIRRELDAASFGDAIVQNFGSSQDVLIRLAPREGVKSA--EVGDQVMLALRATGKNVD 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP +  EL  +G + ++ + I +LIY+ +RF+W FALG+++ L  D+  TLG 
Sbjct: 119 MRRIEFVGPNVGEELTEQGGLAMLTALICILIYVAMRFEWRFALGSVSALAHDVIITLGL 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+   +EF+LT +AAVL +IGYS+ND +VV DR+R+N +    + S  ++I+ S+ +TL 
Sbjct: 179 FSFLQLEFDLTILAAVLAVIGYSLNDTIVVSDRIRENFRKIRKAES-EEIINISLTQTLN 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
           R++ TS+   + +L +   GG++I  F+  + FG+V+  
Sbjct: 238 RTIITSVTTILVLLALFFVGGALIHGFSTALLFGVVIGT 276


>gi|330957509|gb|EGH57769.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 303

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 160/286 (55%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     +++L ++ ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAVTMLLTVLALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVAAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGIGMLLALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  +++  +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAISALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|86609215|ref|YP_477977.1| preprotein translocase subunit SecF [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557757|gb|ABD02714.1| protein-export membrane protein SecF [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 333

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 84/260 (32%), Positives = 144/260 (55%), Gaps = 9/260 (3%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G+DF GG  L +   RPV    +R  L+   +G    Q         +       ++   
Sbjct: 58  GLDFSGGTLLDLSFERPVTTEELRRALQEHNLGSSIIQLDTQTGQEALIRMPPLSETE-- 115

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 V+  + + V        E VGP + R L+R GIV V+IS   +++Y+ +RF+W 
Sbjct: 116 ---RLAVEATLRQEVAPFQRNLVETVGPTVGRLLLRSGIVAVLISFGLIVLYLALRFQWD 172

Query: 692 FALGAITTLILDITKTLGFFALFGIEF----NLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +A+ AI  L+ D+  T+G FAL G+      +   V A+LT+IG+SVND VV+YDR+R+N
Sbjct: 173 YAVFAIVALLHDVVLTIGLFALLGLTVGMEADSLFVVALLTIIGFSVNDTVVIYDRIREN 232

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++L +  +S  ++++ S+N+T  RS+ T++   + ++ +A++GG+ +  FAI +  G  +
Sbjct: 233 LRLVSRKVSLAEVVNLSLNQTFARSLNTTLTTMLPLVAIAIFGGATLKGFAIALLIGFTL 292

Query: 808 AASSSIFIAAPILLFIYDWR 827
              SSIFIA+P+L++    R
Sbjct: 293 GVYSSIFIASPLLVWWRQQR 312


>gi|330815587|ref|YP_004359292.1| Protein export protein SecD [Burkholderia gladioli BSR3]
 gi|327367980|gb|AEA59336.1| Protein export protein SecD [Burkholderia gladioli BSR3]
          Length = 680

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 163/516 (31%), Positives = 262/516 (50%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + RS L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 160 ASDARSQLRDKGIRDGGVNRVDLSVVANFADQDTAEQARRFLAGSITELQWATQPG---- 215

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    S      V   A++Q++  +  R++++G+SE  +Q+ G  RI+++L
Sbjct: 216 ----GGGYQVVGTFSPAVQATVEDAALKQNLTTLHNRVNELGVSEPILQQQGRDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L+   V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPVNLHPNPNDPVPPGDELFTQGNQAPVLLRKSVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDAAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAATDLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +GLV+   + +N++L +A LS++ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFVAIAVFMIAYYMLFGLVSVIGLSVNLLLLVAALSMMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R   +   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERIREELRSGAAPQVAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   + IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCIGILTSMFSAVFFSRGLVNLWYGGRKKLK 606



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 90/209 (43%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G+  VI   +A+ +++
Sbjct: 404 TGQPTPQAATDLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVHSVIWGFVAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F L ++  L +++   +   ++      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGLVSVIGLSVNLLLLVAALSMMQATLTLPGIAAIALALGMAIDSNVLINERI 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++   +  + +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELR---SGAAPQVAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCIG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSV 608



 Score = 38.9 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 20/46 (43%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLG 47
          R   W  ++  +   IGLL  LPNF  ++   +  S     +I  G
Sbjct: 3  RYPIWKYVVMVVALAIGLLYTLPNFYGEAPAVQVSSGKATVKIDSG 48


>gi|298486007|ref|ZP_07004081.1| protein-export membrane protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159484|gb|EFI00531.1| protein-export membrane protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 303

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 160/286 (55%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIVSLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  ++++ +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIVALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|264680869|ref|YP_003280779.1| protein-export membrane protein SecF [Comamonas testosteroni CNB-2]
 gi|299531886|ref|ZP_07045286.1| preprotein translocase subunit SecF [Comamonas testosteroni S44]
 gi|262211385|gb|ACY35483.1| protein-export membrane protein SecF [Comamonas testosteroni CNB-2]
 gi|298720061|gb|EFI61018.1| preprotein translocase subunit SecF [Comamonas testosteroni S44]
          Length = 318

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS +    ++  LF+ GL+  ++F GG  + V   +P D
Sbjct: 1   MEFFRIKKDIPFMKYALVFNAISFITFALAVFFLFSRGLHLSVEFTGGTVMEVAYTQPAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR  +  L   D+  QNF   K+ ++RL  Q G + AQ    E V   +       T
Sbjct: 61  IGKVRETVSKLGYADVIVQNFGTSKDVMIRLPVQKGVTTAQQS--ERVITALKAEDAEVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL+  G++ + +  + ++IY+  RF+W F + AI   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGDELMHNGLMALGMVVLGIIIYLAFRFEWKFGVAAIIANLHDVIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +A VL ++GYSVN+ VV++DR+R+  + +   +S  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LSTHEVIDHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +    VL M  +GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|54294897|ref|YP_127312.1| preprotein translocase subunit SecF [Legionella pneumophila str.
           Lens]
 gi|53754729|emb|CAH16216.1| hypothetical protein lpl1976 [Legionella pneumophila str. Lens]
          Length = 305

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 99/294 (33%), Positives = 165/294 (56%), Gaps = 7/294 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM AR W    SIL  + SI  L  +GL +G+DF GG Q+ +  ++  D
Sbjct: 1   MEFFNPNSKIDFMGARRWTALFSILIFVVSIGALMINGLKWGLDFTGGTQIEISYSKAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L ++R NL      +    ++   K+ L+ +  +        +   M+  ++ E++P + 
Sbjct: 61  LPLIRENLNKAGFKEAQVVSYGTSKDVLISIAPR------ADKQQSMLVDQVMEVLPGAV 114

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            Q  + VGP++ +EL  KG + +I+S +A +IYI +RF++  A+ +   LI D    LG 
Sbjct: 115 KQRVDFVGPQVGQELATKGALAIIVSLLATMIYIAMRFEYKLAVSSAVALIHDPVLILGV 174

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FALFGIEF+L A+A +L +IGYS+ND +VV+DR+R+N        S  D+++ SIN+TL 
Sbjct: 175 FALFGIEFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKI-RRTSPIDIMNISINQTLS 233

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+     V+ + V+GG  I  F++ +  GIV+   SSI++A  + + + 
Sbjct: 234 RTIMTSVLTLFVVVALFVYGGEAIYGFSLALIIGIVIGTYSSIYVAGALAVTMG 287


>gi|260221945|emb|CBA31016.1| Protein-export membrane protein secF [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 317

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 167/302 (55%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS +  + ++  LF+ GL+  ++F GG  + V  ++P +
Sbjct: 1   MEFFKIRRDIPFMRNALIFNLISFVTFVAAVFFLFSRGLHLSVEFTGGTLMEVSYSQPAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +RS + SL I D+  QNF   ++ L+R+  Q G +  Q    + V   +      +T
Sbjct: 61  LDNIRSTVASLGINDVQVQNFGTAQDVLIRMPVQKGSTSGQQS--DKVLSALKASDASAT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL   G+  +    + ++IY+ IRF+W FA+ AI   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGDELAADGLKALAFVVVGIMIYLAIRFEWKFAVAAIIANLHDVIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AAVL ++GYSVN+ VV++DR+R+N + Y   ++   +ID +I  T+ 
Sbjct: 179 FAFFQWEFSLPVLAAVLAVLGYSVNESVVIFDRIRENFRRYRK-MNTEQIIDNAITSTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M V+GG+ +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHGSTQLMVLSMLVFGGATLHYFALALTIGILFGIYSSVFVAAAIAMWLGIQREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|213163215|ref|ZP_03348925.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213427841|ref|ZP_03360591.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|224582244|ref|YP_002636042.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|289825050|ref|ZP_06544402.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|56128695|gb|AAV78201.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|224466771|gb|ACN44601.1| protein export protein SecD [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|321225132|gb|EFX50193.1| Protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322614690|gb|EFY11619.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618796|gb|EFY15684.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623503|gb|EFY20342.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629199|gb|EFY25978.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631919|gb|EFY28673.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637343|gb|EFY34045.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642029|gb|EFY38639.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647848|gb|EFY44323.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652525|gb|EFY48879.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653312|gb|EFY49645.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660539|gb|EFY56775.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664691|gb|EFY60884.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669256|gb|EFY65406.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670802|gb|EFY66935.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322678960|gb|EFY75015.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322681988|gb|EFY78013.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685183|gb|EFY81180.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323194469|gb|EFZ79664.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196995|gb|EFZ82137.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203979|gb|EFZ88996.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206935|gb|EFZ91888.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210847|gb|EFZ95719.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214537|gb|EFZ99288.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323223094|gb|EGA07437.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227044|gb|EGA11225.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230139|gb|EGA14259.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233877|gb|EGA17966.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238429|gb|EGA22487.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244117|gb|EGA28126.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246277|gb|EGA30260.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251903|gb|EGA35766.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257900|gb|EGA41579.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261087|gb|EGA44679.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264983|gb|EGA48482.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272546|gb|EGA55953.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326622110|gb|EGE28455.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 604

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 294/524 (56%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS+ ++              + L    +  ++ + +  ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 604



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  I++           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  + 
Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 598


>gi|254468161|ref|ZP_05081567.1| protein-export membrane protein SecD [beta proteobacterium KB13]
 gi|207086971|gb|EDZ64254.1| protein-export membrane protein SecD [beta proteobacterium KB13]
          Length = 630

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 161/520 (30%), Positives = 274/520 (52%), Gaps = 23/520 (4%)

Query: 24  PNFLPQSML-DRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
           PNF+    L    P  +       + LGLDLRGG H +++VD  +          +E+R+
Sbjct: 97  PNFVVALNLLPNSPKWLESIGGQPMYLGLDLRGGVHFLMQVDLSNIEAKESSGRVNEIRT 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV----NSKLNVDPKKNLL 135
            L++  I    +      I +   +    +     +              L     K  +
Sbjct: 157 LLRENKIRYDQISVEDGSILVQLTNENDLKKSKSLLLQDDSSFEFSKRINLGGSIGKEKI 216

Query: 136 VTTTEKEISIVLSQNN---IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
              T+    ++  + +    +++   AI+Q++E +  RI+++G++E  IQ+ G +RI++Q
Sbjct: 217 KEITDNGTFVLAIEGSQANKEEMTKFAIKQNLETLNNRINELGVAEPIIQQQGENRIVVQ 276

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG--------FMFGVRFLRDSDGNQYLVE 244
           LPG QD ++ + ++G TA +    V    S             FG     D + N  L++
Sbjct: 277 LPGVQDTAKAKDIIGRTALLEMRLVDDEASPADIDQAIDGNIPFGRDLFYDRNQNPLLLK 336

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDG 300
             V ++G ++N A    D +T + +V ++ D  GA  F ++TRDNIGK +          
Sbjct: 337 KDVILTGENINNAGPGVDNQTGQSIVSLNLDSKGANIFKKITRDNIGKRIAILLIEKDIT 396

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            ++TAPVI   I  G+ QI+G    + A  ++ +LRAGSL   + I+EER VG  +G ++
Sbjct: 397 EIITAPVIKSEIGGGRVQITGMKNAQEATDVSLLLRAGSLAAPMEIIEERTVGPSMGKEN 456

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I +G  +   G + +++ + + Y  +GL +  ++ +N++L +ALLS + ATLTLP +A +
Sbjct: 457 IQRGIQSTFWGFIAVIILISIYYMLFGLFSSIALSINLVLLVALLSTIQATLTLPGLAAM 516

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+A+DSN+L+NERIR+E R   +   S+ +G+ +A+ TI DSNIT LIA + LF F
Sbjct: 517 ALTVGMAIDSNVLINERIRDEIRNGNTPQASIHLGYEKAWGTILDSNITTLIAGIALFMF 576

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G G ++GFA+   L IL SMF+AI + RA++ F    K+ 
Sbjct: 577 GTGPIKGFAVVHVLGILTSMFSAILVSRALVNFFYGSKRK 616



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 91/212 (42%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G   AQ      +  +   +     I     VGP + +E I++GI       IA++
Sbjct: 413 VQITGMKNAQEATDVSLLLRAGSLAAPMEIIEERTVGPSMGKENIQRGIQSTFWGFIAVI 472

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I I I +   F L +   L +++   +   +       L  +AA+   +G +++  V++ 
Sbjct: 473 ILISIYY-MLFGLFSSIALSINLVLLVALLSTIQATLTLPGLAAMALTVGMAIDSNVLIN 531

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      + +  I     +  G  + +++   I+ + + ++G   I  FA+  
Sbjct: 532 ERIRDEIR---NGNTPQASIHLGYEKAWGTILDSNITTLIAGIALFMFGTGPIKGFAVVH 588

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S+I ++  ++ F Y  + K  ++
Sbjct: 589 VLGILTSMFSAILVSRALVNFFYGSKRKIDKL 620



 Score = 40.4 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 33/118 (27%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + + W   L  +I    L  ALPNF  ++   +         I  G              
Sbjct: 3   QFSRWKNTLILLIVVFALFYALPNFFGEAPAVQI------MPIKSGE------------K 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D  +    +   +E         I    +   +N I +   ++  +      +   L
Sbjct: 45  MDPIIASQSEKILEE-------NNITYNGVVLTENFIKIKLTNNEDQLTSKGLLEDKL 95


>gi|300310569|ref|YP_003774661.1| export membrane protein SecD transmembrane [Herbaspirillum
           seropedicae SmR1]
 gi|300073354|gb|ADJ62753.1| export membrane protein SecD transmembrane [Herbaspirillum
           seropedicae SmR1]
          Length = 634

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 166/511 (32%), Positives = 275/511 (53%), Gaps = 20/511 (3%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N LP +   ++  ++    + LGLDLRGG H +++VD    +N  LQ     +RS
Sbjct: 108 YIVAFNLLPNTP--QWLQSLHAFPMYLGLDLRGGVHFLMQVDIKAVLNKRLQGMQASVRS 165

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+ + I    + +  + I +SF D+  +      +             +       +  
Sbjct: 166 LLRDKNIRHSGISRSGDSIEISFRDADTRNKARAALGEL---------QEMLLTDAGSGD 216

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           + ++   L    + Q     ++Q++  + +R++++G++E  IQR G+ RI+++LPG QD 
Sbjct: 217 DLKLIATLRPEALKQTQEDGVKQNISTLSKRVNELGVAEPLIQRQGADRIVVELPGVQDV 276

Query: 200 SRLRQLLGTTAKMSFHKVLP-----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           SR + ++G TA +    V               FG    +   G   ++  +  ++G ++
Sbjct: 277 SRAKDIIGRTATLEVRMVDESVVRGTEETTAIPFGSELFKIGKGAPVVLNKEPVLTGDYI 336

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQA 311
           + A+A+FD   H+P V I  +  G R+  E TRD +GK +A+VL  +    +      ++
Sbjct: 337 SNASASFDEN-HQPAVSIDLNGDGGRKMREATRDKVGKAMAIVLFEKGKGEVLTVATIRS 395

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
               + QI+G  + E A  LA +LRAGSL   ++I+EER +G  LG+D+I KG  +++ G
Sbjct: 396 ELGSRFQITGMGSPEAASDLALLLRAGSLAAPMDIIEERTIGPQLGADNIKKGFDSVLYG 455

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
            + + +FM++ Y  +G  +  ++ +NV+L +ALLS L  TLTLP IA I L +G+A+DSN
Sbjct: 456 FLAMAIFMVIYYQLFGFFSALALSVNVLLLVALLSTLQVTLTLPGIAAIALALGMAIDSN 515

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+NERIREE R   S   ++  GF RA++TI DSN+T LIA + L  FG GA+RGFA+ 
Sbjct: 516 VLINERIREELRAGNSPQAAIAAGFDRAWATILDSNVTTLIAGLALLIFGSGAIRGFAVV 575

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             L IL SMF+A+   R ++      KK  S
Sbjct: 576 HCLGILTSMFSAVFFSRGVVNLWYGRKKRLS 606



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 86/185 (46%), Gaps = 4/185 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP++  + I+KG   V+   +AM I++ I ++  F   +   L +++   +
Sbjct: 428 MDIIEERTIGPQLGADNIKKGFDSVLYGFLAMAIFMVIYYQL-FGFFSALALSVNVLLLV 486

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              +   +   L  +AA+   +G +++  V++ +R+R+ ++      S +  I    +  
Sbjct: 487 ALLSTLQVTLTLPGIAAIALALGMAIDSNVLINERIREELRA---GNSPQAAIAAGFDRA 543

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L + ++G   I  FA+    GI+ +  S++F +  ++   Y  + 
Sbjct: 544 WATILDSNVTTLIAGLALLIFGSGAIRGFAVVHCLGILTSMFSAVFFSRGVVNLWYGRKK 603

Query: 829 KNARI 833
           + + +
Sbjct: 604 RLSSL 608



 Score = 39.7 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF 35
          R + W   L  +    G++  +PNF  +S   + 
Sbjct: 3  RYSLWKYALIVLALLFGVIYTVPNFFGESPAVQI 36


>gi|134093586|ref|YP_001098661.1| putative preprotein translocase subunit SecD [Herminiimonas
           arsenicoxydans]
 gi|133737489|emb|CAL60532.1| Putative protein-export membrane protein SecD [Herminiimonas
           arsenicoxydans]
          Length = 619

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 166/511 (32%), Positives = 273/511 (53%), Gaps = 19/511 (3%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            +   N LP +    +  ++    + LGLDLRGG H +++VD    +N  +       R+
Sbjct: 108 YLVAFNLLPNTP--AWLQSLHAAPMYLGLDLRGGVHFLMQVDTKAVMNKRVLGLQASARA 165

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+ + +    + +  + I + F D+  +      +   L+ +              +  
Sbjct: 166 ILRDKNVRHAGIARNGDNIEILFRDAETRSKARTALGDELRELLL--------TDAGSGD 217

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           E ++   L    + Q +  A++Q++  + +R++++G++E  IQR G+ RI++QLPG QD 
Sbjct: 218 ELKLVGALQPAALKQTVEDAVQQNITTLSKRVNELGVAEPLIQRQGADRIVVQLPGVQDV 277

Query: 200 SRLRQLLGTTAKMSFHKVLPN-----NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           SR + ++G TA +    V               FG    +       ++     I+G ++
Sbjct: 278 SRAKDIIGKTATLEVRLVDETVTRGTEDTATIPFGSELFKVGKNAPVVLYKDPIITGEYI 337

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV---LTAPVINQA 311
           + A+A+FD    +P V I  +  G RR  E TR  +GK +A+VL  +    +      + 
Sbjct: 338 SSASASFDQNQ-QPSVSIDLNGDGGRRMREATRTRVGKAMAIVLFEKNKGEVLTVATIRD 396

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
               + QI+G  + E A  LA +LRAGSL   + I+EER +G  LG+++I KG  A + G
Sbjct: 397 ELGARFQITGMGSSEAASDLALLLRAGSLAAPMEIIEERTIGPQLGAENIKKGFDATLYG 456

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
            + I +FMI+ Y  +G  + F++ +NV+L +ALLS+L ATLTLP IA I L +G+A+D+N
Sbjct: 457 FIGIAIFMIIYYRAFGFFSVFALAVNVMLLIALLSMLQATLTLPGIAAIALTLGMAIDAN 516

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+NERIREE R   S   ++ MGF RA++TI DSN+T LIA + L  FG GAVRGFA+ 
Sbjct: 517 VLINERIREELRAGHSPQTAIAMGFERAWATILDSNVTTLIAGLALLIFGSGAVRGFAVV 576

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             L IL S+F+A+ + R ++      KK  +
Sbjct: 577 HCLGILTSIFSAVFVSRGVVNLWYGRKKKLT 607



 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 83/181 (45%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP++  E I+KG    +   I + I++ I ++  F   ++  L +++   +
Sbjct: 429 MEIIEERTIGPQLGAENIKKGFDATLYGFIGIAIFMIIYYR-AFGFFSVFALAVNVMLLI 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++      S +  I       
Sbjct: 488 ALLSMLQATLTLPGIAAIALTLGMAIDANVLINERIREELRA---GHSPQTAIAMGFERA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L + ++G   +  FA+    GI+ +  S++F++  ++   Y  + 
Sbjct: 545 WATILDSNVTTLIAGLALLIFGSGAVRGFAVVHCLGILTSIFSAVFVSRGVVNLWYGRKK 604

Query: 829 K 829
           K
Sbjct: 605 K 605



 Score = 42.0 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 34/121 (28%), Gaps = 23/121 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I   +   +G L  +PNF  +S                         +     
Sbjct: 3   RYPLWKYITIVIALLLGALYTIPNFFGESPA---------------------VQISSAKA 41

Query: 62  EDDFVNGFLQMYSDEL-RSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +  +      L ++ L+ +G+   ++      + + F ++  +      +   L 
Sbjct: 42  TVKVDSSLMTQVEQVLQKAGLQSDGMVYETIGTQG-TVRVRFPNTDVQFKAKGLLEANLN 100

Query: 121 G 121
            
Sbjct: 101 L 101


>gi|317404685|gb|EFV85077.1| protein-export membrane protein [Achromobacter xylosoxidans C54]
          Length = 311

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 155/302 (51%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  + T G +  I+F GG  + V   +   
Sbjct: 1   MEFFRIHRTIPFMRHALVLNIISLVTFVAAVFFILTRGFHLSIEFTGGTVMEVNYAQTAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  +  L   D   QNF    + ++RL  Q G + A     E V   +        
Sbjct: 61  LENVRGVVSKLGYTDFQVQNFGTSHDVMIRLPLQEGQTSATQS--ETVMAALKAADQGVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL+  G++ +++  I +++Y+  RF+W FA+  +   + D+   LGF
Sbjct: 119 LRRVEFVGPQVGQELLHNGLMALLVVVIGIMVYLGFRFEWKFAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +A VL ++GYSVN+ VV+ DR+R+N + Y      +++I+ +I +T+ 
Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKYRK-ADVQEVINSAITQTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI     SS+F+AA + +++   R   
Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPTLHYFAMALTIGIWFGIYSSVFVAAALAMWMGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299



 Score = 45.5 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 35/196 (17%), Positives = 93/196 (47%), Gaps = 5/196 (2%)

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GK 385
                  M    +    + +     VG  +G + ++ G  A++  ++ I++++   +  K
Sbjct: 100 ATQSETVMAALKAADQGVELRRVEFVGPQVGQELLHNGLMALLVVVIGIMVYLGFRFEWK 159

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
           + +    +   +V++ L   +      +L  +AG++  +G +V+ ++++ +RIRE  RK 
Sbjct: 160 FAVAGVIANLHDVVIILGFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKY 219

Query: 446 Q--SVFCSLDMGFSRAYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           +   V   ++   ++  S TI     T ++   +LFF GG  +  FA+ + + I   +++
Sbjct: 220 RKADVQEVINSAITQTISRTIITHGSTQMMVLAMLFF-GGPTLHYFAMALTIGIWFGIYS 278

Query: 503 AISIVRAMMIFIIRYK 518
           ++ +  A+ +++   +
Sbjct: 279 SVFVAAALAMWMGVKR 294


>gi|288934132|ref|YP_003438191.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
 gi|288888861|gb|ADC57179.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
          Length = 1037

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  L        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQLTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W +   +L        L        ++ +G     V
Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++  +   ++ +  + E  F        G+     R+   +K    
Sbjct: 576 QLPSGATQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    ++ 
Sbjct: 636 RDPETGSSFAIIERATKAFNQINEARVIA 664



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A    +     ++++  P 
Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +          + G    + ++G     +  +  PG S      +       
Sbjct: 789  VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  + +     +   W      +  + L
Sbjct: 849  LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    + G+E ++     +LT+IG S  + +++ +   +   L            
Sbjct: 906  GVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +  + L   + TS+A    VLPMA     G     +    +  G++ A   +IF     
Sbjct: 963  SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022

Query: 820  LLFIYDWRAKNAR 832
             + +        R
Sbjct: 1023 FVLVRRRFPLKER 1035


>gi|161504407|ref|YP_001571519.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865754|gb|ABX22377.1| hypothetical protein SARI_02518 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 604

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 167/524 (31%), Positives = 291/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L++EGI
Sbjct: 93  NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREEGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS+ ++                L    +  ++ +     +  
Sbjct: 153 PYTTVRKEDNYGLSITFRDSKARDEAIT-----------YLTPRHRDLVISSQGGNALRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 604



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  I++           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  + 
Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 598


>gi|289626170|ref|ZP_06459124.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289649077|ref|ZP_06480420.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 303

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 96/286 (33%), Positives = 162/286 (56%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++LF+  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLFTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIVSLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  ++++ + V+GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIVALWVFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|317484496|ref|ZP_07943406.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila
           wadsworthia 3_1_6]
 gi|316924272|gb|EFV45448.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila
           wadsworthia 3_1_6]
          Length = 1054

 Score =  209 bits (531), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 68/682 (9%), Positives = 181/682 (26%), Gaps = 37/682 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   +  ++  +I  +G +           ++++P   P          +   +     
Sbjct: 21  LRRPIFSTVISLIITLVGAIAI-----SVLPVEQYPDLTPP---------QVEVNATYTG 66

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
              + +   +    +   + +              +  +T+SF      +     V   +
Sbjct: 67  ASANVIAETVASLLESQINGVDNMIYMNSVSSGTGSMSLTVSFNVGTDPDQATIDVNNRV 126

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q   ++L  + ++  +    +    + +          + I  S   +   +D++     
Sbjct: 127 QLALAQLPQEVQRMGVSVLKKSSSMLQIIFLTSPDQRYNTIYLSNYALLNIVDELKRLPG 186

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +     P  + QL  T   ++      N        G   +    G 
Sbjct: 187 VGDAKNFAAQDYSMRVWLKPDVMSQLGVTPEDIATALRDQNAQFAAGRMGAEPMSPGVGV 246

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
            + +  +  ++                +    I   +             I         
Sbjct: 247 TWQITTQGRLT-------------TPEQFGDVILRTQPDGSILRLKDVATIELGAQSYDF 293

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                               +   T E        L           +          S 
Sbjct: 294 VGKYNGLDAVPIGIYLSPGANALATAEVVKAKMEELSKEFPVGVAYSIPYDTTTFVKISI 353

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV +V+++ +   +  L+   ++ ++++ T A +  LG ++   ++ G
Sbjct: 354 EEVVKTLFEAMVLVFLVVYLFLQNWRATLIPCLAVPVSIVGTFAGMYALGFSINTLTMFG 413

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +            +           +    +      + + F
Sbjct: 414 LVLAIGIVVDDAIVVLENVERHISDGLPPRKATAKAMQEVTGPVIAIVLVLCAVFIPVAF 473

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSR 530
            GG      + FAIT+ +S++IS   A++   A+   +++          +  +      
Sbjct: 474 TGGMAGRMYQQFAITIAVSVVISGAVALTFTPALCALLLKPGHGEPNVFFRKFNGWFEGL 533

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  + +   R+        ++            G     + +G +   +       
Sbjct: 534 TGKYVSIVKLLLRRSLLAVGLFVLVLVGIGGVFERVPGGLVPDEDQGYLIALMTMPDGAA 593

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +S   + +E L    ++        +F                    +K       P  +
Sbjct: 594 ISRTSAVVEKLDKAIMADPLVADVMSFSGMDAVSGAAKTNVATFFFTLKPWGERKAPGDS 653

Query: 651 IQNTEIVGPKISRELIRKGIVG 672
             +       +   L +   + 
Sbjct: 654 SFDLARKLYGMGFGLEQGSFIA 675



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 87/237 (36%), Gaps = 7/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V +     Q  D   +    +   +        +++A   V++   +++++  P+    
Sbjct: 280 DVATIELGAQSYDFVGKYNGLDAVPIGIYLSPGANALATAEVVKAKMEELSKEFPVGVAY 339

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +         +  I + +  +  + + + + +++  + W   L     + + I  T    
Sbjct: 340 SIPYDTTTFVKISIEEVVKTLFEAMVLVFLVVYLFLQNWRATLIPCLAVPVSIVGTFAGM 399

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N   +  ++  IG  V+D +VV + +    +  +  +  R    K++ E  G 
Sbjct: 400 YALGFSINTLTMFGLVLAIGIVVDDAIVVLENV---ERHISDGLPPRKATAKAMQEVTGP 456

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   +      +P+A  GG        FAI +A  +V++ + ++     +   +  
Sbjct: 457 VIAIVLVLCAVFIPVAFTGGMAGRMYQQFAITIAVSVVISGAVALTFTPALCALLLK 513



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 88/252 (34%), Gaps = 7/252 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V      D  +  + L +++                 +    P    +  + +  +++ 
Sbjct: 797  EVYVRNKQDEMIPLTALINVKPTSGPQTVERFNNFQAAKFMGNPATGYSSGQAMTAMEEV 856

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
              E++P               + +   G +  +++ + + + +  +++ W   L  +T +
Sbjct: 857  AKEVLPDGYTIAW-SGSSYQEKLVSSGGSLVFVLALVMVFLILAAQYESWSLPLTVLTAV 915

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               +   +    L GI  ++    A++TLIG S  + +++ +   +  +           
Sbjct: 916  PFGVLGAITAIWLRGISNDVYFQVALVTLIGLSAKNAILIVEFAVEQYR--NEGKDAVHA 973

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             +++        V TS+A  +  +P+AV    G +   +    +  G++VA   +     
Sbjct: 974  AEEAARLRFRPIVMTSLAFILGCVPLAVSTGAGAASRHAIGTSVIGGMLVATLVAPLFVP 1033

Query: 818  PILLFIYDWRAK 829
                +I     K
Sbjct: 1034 FFFRWIMRASEK 1045


>gi|307543988|ref|YP_003896467.1| preprotein translocase subunit SecF [Halomonas elongata DSM 2581]
 gi|307216012|emb|CBV41282.1| preprotein translocase subunit SecF [Halomonas elongata DSM 2581]
          Length = 308

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 96/291 (32%), Positives = 156/291 (53%), Gaps = 6/291 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                FM  R +    S+   + S+  +   GLN G+DF GG  + V       LS+VR 
Sbjct: 6   NRQFDFMGKRRYAFIFSVATLLISLVAILVQGLNLGLDFTGGTLVEVRYATAPALSMVRE 65

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            LE+    D++ Q F      L+RLQ           V   V   + +      +   E 
Sbjct: 66  TLEAAGFKDVAVQTFGASTEVLIRLQ-----QAFDADVGNQVVDLLRQGGNNVDLVRAEF 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG ++  +L  +  +G++++   +++Y+  RF++ FALGA+  L  D+   LG FALFG 
Sbjct: 121 VGAQVGDQLRDQSGMGMLVALGVVVLYVAFRFQYKFALGALLALGHDVLIVLGIFALFGF 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EF+LT +AAVL +IGYS+ND +VVYDR+R+N++  +       + +++IN+TL R++ TS
Sbjct: 181 EFDLTVLAAVLAVIGYSLNDTIVVYDRIRENIRK-SRIDDMPAIFNEAINQTLSRTLATS 239

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               + VL + + GG +I  FA+ +  GI V   SSI+++A +LL +   R
Sbjct: 240 GTTLLVVLALMILGGDMIHYFAVALFIGIAVGTFSSIYVSAALLLPLKLQR 290


>gi|153824594|ref|ZP_01977261.1| protein-export membrane protein SecD [Vibrio cholerae MZO-2]
 gi|149741812|gb|EDM55841.1| protein-export membrane protein SecD [Vibrio cholerae MZO-2]
          Length = 617

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 152/523 (29%), Positives = 277/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 104 NLAPSTPNWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       T     +   
Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 395 INQATIQSALGRNFRITGIDSPSEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPSEAHNLALLLRAGA 430

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 606

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 607 YGGKRINK 614



 Score = 39.3 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 38/118 (32%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   I  L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVMLTIAIAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D + + L K  +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTTALDKAHLSKKSIALENGSILVRFNDTDTQISARDIISEAL 95


>gi|42523691|ref|NP_969071.1| protein-export membrane protein SecF [Bdellovibrio bacteriovorus
           HD100]
 gi|39575898|emb|CAE80064.1| protein-export membrane protein SecF [Bdellovibrio bacteriovorus
           HD100]
          Length = 312

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/303 (31%), Positives = 164/303 (54%), Gaps = 8/303 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                F+   ++  G+S++  + S+  L  HG++YGIDFKGG ++ V  ++ V +  VR 
Sbjct: 9   FGRFDFVGKAWFFGGVSLVLVVASLIYLAVHGISYGIDFKGGTEIQVKFDQGVTIDQVRD 68

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK-------KKITEIVPLS 649
           ++  L +G++  Q+F     F++R Q + G +  +T  +                +    
Sbjct: 69  SVAGLDLGEVGVQSFGEGNEFIIRFQGREGKTDKETNEILNADLGKVRGIIAEKFVASNP 128

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I+  + VGP++  EL R G++ V    + +LIY+ +RF + FA GA+  L  D   TL 
Sbjct: 129 DIRRIDTVGPQVGAELKRNGLLAVFYCLLVILIYVALRFDYKFAPGAVLCLFHDAVITLA 188

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F L G E N++ +AA++TLIG+S+ND +VV+DR+R+ +        F+ +I+KSINE L
Sbjct: 189 VFVLVGKEVNVSILAAIMTLIGFSLNDTIVVFDRIRE-VDTGNHDKGFKFVINKSINEML 247

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ TS   F+S L + ++    +   A  +  GI     SSI++AAP +L +   + K
Sbjct: 248 VRTLITSGTTFVSALCLYIFADGTVEDIAFSICVGIFFGTYSSIYVAAPFVLLMDKLQFK 307

Query: 830 NAR 832
            A+
Sbjct: 308 KAK 310


>gi|113461456|ref|YP_719525.1| preprotein translocase subunit SecD [Haemophilus somnus 129PT]
 gi|112823499|gb|ABI25588.1| protein-export membrane protein [Haemophilus somnus 129PT]
          Length = 616

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 159/524 (30%), Positives = 285/524 (54%), Gaps = 39/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       +  GLDLRGG   ++EVD    ++   +   D LR+ L+KE  
Sbjct: 104 NLAPATPKWLTNIGGRPMKWGLDLRGGVRFLMEVDMHTALDKRQEQLQDSLRTELRKEKY 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+R  +N    ++ A      ++   +    Q +N           +   +E  +S+
Sbjct: 164 QYTSIRNGENFTTLITLAKPEQLSDVQRFLRKQHQNLN-----------VNAISENTLSL 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS+N + ++  HAIEQ++ I+R+R++++G++E  IQR G+ RI+++LPG QD +R +++
Sbjct: 213 ELSENALREIRDHAIEQNLSILRRRVEELGVAEPVIQRQGAERIVVELPGVQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N +    + G+         D +G+  ++  +  + G H+  A++ 
Sbjct: 273 LGATATLEFRLVNQNANLDVALRGMVPSDSEVKYDRNGSPIVLYRRAVLGGEHITNASSG 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D  T  P V ++ D  G     + T+ N+ KP+A +      +                
Sbjct: 333 IDQNTGSPQVSVTLDSEGGEIMSQTTKLNLKKPMATLYVEYKDSGKKDEHGKTILAKHEE 392

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q     + QI+G  +   A  LA +LR+G+L   + I+EER VG  LG+ ++ 
Sbjct: 393 VINVATIQGRFGSQFQITGINSPAEAQNLAVLLRSGALTAPIQIIEERTVGPSLGAQNVE 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GL + ++F++  Y  +GL A  ++  N++L + ++SLL  ATLT+P IAGIV
Sbjct: 453 QGLKAGLWGLAITIIFILFYYKLFGLFASIALIANMVLLVGIMSLLPGATLTMPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G++VD+N+L+ ERI+EE    +++  +++ G+S A+++IFD+N+T ++ +VVL+  G
Sbjct: 513 LSVGMSVDANVLIFERIKEEINNGRTIQQAINEGYSGAFTSIFDANLTTILTSVVLYAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G V+GFAIT+ L + ISMFTAI+  R ++  I   K+++ + I
Sbjct: 573 TGPVKGFAITLSLGVAISMFTAITGTRFLVNLIYGGKRVEKLSI 616



 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 78/172 (45%), Gaps = 5/172 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP +  + + +G+   +      +I+I   +K  F L A   LI ++   +G  +L  G 
Sbjct: 443 GPSLGAQNVEQGLKAGLWGLAITIIFILFYYKL-FGLFASIALIANMVLLVGIMSLLPGA 501

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              +  +A ++  +G SV+  V++++R+++ +       + +  I++  +         +
Sbjct: 502 TLTMPGIAGIVLSVGMSVDANVLIFERIKEEI---NNGRTIQQAINEGYSGAFTSIFDAN 558

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   ++ + +   G   +  FAI ++ G+ ++  ++I     ++  IY  + 
Sbjct: 559 LTTILTSVVLYAVGTGPVKGFAITLSLGVAISMFTAITGTRFLVNLIYGGKR 610



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 41/133 (30%), Gaps = 30/133 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  IG+L +LPN   +    +                  G+       
Sbjct: 4   RYPLWKNLMVILVIAIGVLYSLPNLYGEDPAVQI----------------SGTR----GQ 43

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF----KENIADKVTL 117
             D            +++ L++  + + S+      I   F ++      K+ I +++  
Sbjct: 44  TADI------NVLTNVQTLLEQNNLPIKSIILENGSILARFNNTDDQLLAKDKIIEQLGN 97

Query: 118 FLQGVNSKLNVDP 130
                 +     P
Sbjct: 98  NYSVALNLAPATP 110


>gi|253687416|ref|YP_003016606.1| protein-export membrane protein SecD [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753994|gb|ACT12070.1| protein-export membrane protein SecD [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 604

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 167/538 (31%), Positives = 289/538 (53%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A PN+L     +          + LGLDLRGG H ++EVD D  +    + 
Sbjct: 88  FVVALNLAPATPNWLRLLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 138

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+++ I   S+R+I N  + + F D++ +++  + +T   + +         
Sbjct: 139 TMDSLRSDLREKNIPYASVRKIDNYGVEIRFRDAQTRDDGINYLTSRHRNL--------- 189

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             +L ++    +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI++
Sbjct: 190 --VLSSSGSNLLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 247

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  N        G            DG+  ++  +
Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNSNADATAAANGRVPGDSEVKNMRDGSPVVLFKR 307

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T++ D    +P V+IS D  G       T+D+IGK +A +      +  
Sbjct: 308 VILTGDHITDSTSSNDEYN-RPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGK 366

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                Q+      +I+G      A  L+ +LRAG+L   + IVE
Sbjct: 367 KDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 426

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A + GL+  +LFM+  Y K+G++A  ++  N++L + ++SLL
Sbjct: 427 ERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIVGVMSLL 486

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE    +SV  ++  G+  A+S+I D+N
Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIHEGYKGAFSSIVDAN 546

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +T LI  ++L+  G G+++GFAIT  + I  SMFTAI   RA++  +   K++  + I
Sbjct: 547 VTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +   S+        N    ++ L       G           +  +   
Sbjct: 358 FVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++   +K  F + A + L+ ++
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK-KFGVIATSALVANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  I +
Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIHE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    V  ++   I V+ +   G   I  FAI  A GI  +  ++I     I+  +
Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLL 593

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 594 YGGKRINK 601


>gi|115350663|ref|YP_772502.1| preprotein translocase subunit SecF [Burkholderia ambifaria AMMD]
 gi|115280651|gb|ABI86168.1| protein translocase subunit secF [Burkholderia ambifaria AMMD]
          Length = 316

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   +N L+RLQ + G + AQ    + V   +    P  +
Sbjct: 61  LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMTALKAQSPDVS 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+ IRF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA+L ++GYSVN+ VV++DR+R+  +     +S  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERRMSVSEVINHAITTTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|313901699|ref|ZP_07835130.1| protein-export membrane protein SecF [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468050|gb|EFR63533.1| protein-export membrane protein SecF [Thermaerobacter subterraneus
           DSM 13965]
          Length = 295

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 153/287 (53%), Gaps = 7/287 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                F+R R     +S+L     +      GLNY ++F GG    +   RPV+   VRS
Sbjct: 1   MKGFSFVRTRGVAFALSLLLLAAGMIAWAVRGLNYNVEFTGGAAWTLRFERPVEAGPVRS 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            LE   + D   Q  +G K  LVR  +            + V + +   V    ++  + 
Sbjct: 61  VLEEQGLDDAIVQLAEGGKVALVRTPHVD------QATQQKVLEALGTQVAPVQLEQFDS 114

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           + P I RE+  KG++ + ++ + M++Y+ +RF+++FA+ AI  ++ D+   +G FAL   
Sbjct: 115 ISPVIGREIKEKGLLALGLATVGMIVYMTVRFEFWFAVAAILAMLHDVFMVVGLFALLQW 174

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           + + + +AAVLT+ GYS+ND VVV+DR+R+N++L        +L+D+SI + L RS+ T 
Sbjct: 175 QVDSSFIAAVLTVFGYSINDTVVVFDRIRENLRL-RRKEPLEELVDRSIRQVLRRSLLTG 233

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               +++  +  +GG  I +FA  M FGI+    SSIF+A+P+   +
Sbjct: 234 TTTLMALAAVFAFGGETIRAFAGAMFFGILFGTYSSIFVASPLWYVL 280


>gi|290508336|ref|ZP_06547707.1| multidrug efflux protein [Klebsiella sp. 1_1_55]
 gi|289777730|gb|EFD85727.1| multidrug efflux protein [Klebsiella sp. 1_1_55]
          Length = 1037

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  L        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQLTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W +   +L        L        ++ +G     V
Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++  +   ++ +  + E  F        G+     R+   +K    
Sbjct: 576 QLPSGATQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    ++ 
Sbjct: 636 RDPETGSSFAIIERATKAFNQINEARVIA 664



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A    +     ++++  P 
Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +          + G    + ++G     +  +  PG S      +       
Sbjct: 789  VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  + +     +   W      +  + L
Sbjct: 849  LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    + G+E ++     +LT+IG S  + +++ +   +   L            
Sbjct: 906  GVIGALLATWVRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +  + L   + TS+A    VLPMA     G     +    +  G++ A   +IF     
Sbjct: 963  SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022

Query: 820  LLFIYDWRAKNAR 832
             + +        R
Sbjct: 1023 FVLVRRRFPLKER 1035


>gi|206580218|ref|YP_002237193.1| acriflavine resistance protein D [Klebsiella pneumoniae 342]
 gi|206569276|gb|ACI11052.1| acriflavine resistance protein D [Klebsiella pneumoniae 342]
          Length = 1037

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 80/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  L        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQLTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W +   +L        L        ++ +G     V
Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++  +   ++ +  + E  F        G+     R+   +K    
Sbjct: 576 QLPSGATQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    ++ 
Sbjct: 636 RDPETGSSFAIIERATKAFNQINEARVIA 664



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A    +     ++++  P 
Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQAASGLGIKLASGANEMATAERVINRLNELSQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +          + G    + ++G     +  +  PG S      +       
Sbjct: 789  VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  + +     +   W      +  + L
Sbjct: 849  LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    + G+E ++     +LT+IG S  + +++ +   +   L            
Sbjct: 906  GVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +  + L   + TS+A    VLPMA     G     +    +  G++ A   +IF     
Sbjct: 963  SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022

Query: 820  LLFIYDWRAKNAR 832
             + +        R
Sbjct: 1023 FVLVRRRFPLKER 1035


>gi|300715565|ref|YP_003740368.1| protein translocase subunit SecA [Erwinia billingiae Eb661]
 gi|299061401|emb|CAX58511.1| similar to protein translocase subunit SecA [Erwinia billingiae
           Eb661]
          Length = 322

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/301 (31%), Positives = 163/301 (54%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR       IS L  I S  ++   G N+G+DF GG  + +   +
Sbjct: 5   YTVEQLNYGRKVHDFMRWDKVAFTISALLLIASFAIMGLKGFNWGLDFTGGTVIEITLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P D+  +R  LE     D   QNF   ++ LVR+    G+   Q    ++V         
Sbjct: 65  PADIDSLRGALEKSGFVDPQVQNFGSSRDVLVRMSPNEGN-AGQELGNKVVSIINQASEQ 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++++ IA+LIY+  RF+W  ALGA+  L  D+  T
Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGGMALLVALIAILIYVGFRFEWRLALGAVLALAHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + D+++ S+ +
Sbjct: 184 MGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-DIVNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGALLEGFSLTMLIGVSIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|52842217|ref|YP_096016.1| preprotein translocase subunit SecF [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54297926|ref|YP_124295.1| preprotein translocase subunit SecF [Legionella pneumophila str.
           Paris]
 gi|148359571|ref|YP_001250778.1| protein export protein SecF [Legionella pneumophila str. Corby]
 gi|296107613|ref|YP_003619314.1| protein export protein SecF [Legionella pneumophila 2300/99 Alcoy]
 gi|52629328|gb|AAU28069.1| protein export protein SecF [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53751711|emb|CAH13133.1| hypothetical protein lpp1981 [Legionella pneumophila str. Paris]
 gi|148281344|gb|ABQ55432.1| protein export protein SecF [Legionella pneumophila str. Corby]
 gi|295649515|gb|ADG25362.1| protein export protein SecF [Legionella pneumophila 2300/99 Alcoy]
 gi|307610724|emb|CBX00331.1| hypothetical protein LPW_20571 [Legionella pneumophila 130b]
          Length = 305

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 99/294 (33%), Positives = 165/294 (56%), Gaps = 7/294 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM AR W    SIL  + SI  L  +GL +G+DF GG Q+ +  ++  D
Sbjct: 1   MEFFNPNSKIDFMGARRWTALFSILIFVVSIGALMINGLKWGLDFTGGTQIEISYSKAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L ++R NL      +    ++   K+ L+ +  +        +   M+  ++ E++P + 
Sbjct: 61  LPLIRENLNKAGFKEAQVVSYGTSKDVLISIAPR------ADKQQSMLVDQVMEVLPGAV 114

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            Q  + VGP++ +EL  KG + +I+S +A +IYI +RF++  A+ +   LI D    LG 
Sbjct: 115 KQRVDFVGPQVGQELATKGALAIIVSLLATMIYIAMRFEYKLAVSSAVALIHDPVLILGV 174

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FALFGIEF+L A+A +L +IGYS+ND +VV+DR+R+N        S  D+++ SIN+TL 
Sbjct: 175 FALFGIEFDLKALAGLLAVIGYSLNDTIVVFDRVRENFVKI-RRTSPIDIMNISINQTLS 233

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+     V+ + V+GG  I  F++ +  GIV+   SSI++A  + + + 
Sbjct: 234 RTIMTSVLTLFVVVALFVYGGEAIYGFSLALIIGIVIGTYSSIYVAGALAVAMG 287


>gi|51473765|ref|YP_067522.1| preprotein translocase subunit SecD [Rickettsia typhi str.
           Wilmington]
 gi|81390023|sp|Q68WF2|SECD_RICTY RecName: Full=Protein-export membrane protein secD
 gi|51460077|gb|AAU04040.1| protein-export membrane protein SecD [Rickettsia typhi str.
           Wilmington]
          Length = 518

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 198/533 (37%), Positives = 321/533 (60%), Gaps = 28/533 (5%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N   W ++L  +     ++ ALPNF+  +        +P + ++LGLDLRGG++L+L+
Sbjct: 1   MQNLPKWKIVLSIICTVFAIICALPNFIQIN-----WKFLPHDSVNLGLDLRGGANLLLD 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           VD D ++N  ++  +D LR   ++  IG  ++    N I L    +   +++   +    
Sbjct: 56  VDFDTYLNDSMENIADTLRKNFREHKIGYKNLLVRHNNIQLEVRSTEVLKSLKKIIHK-- 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         +++   + +I +  S++ ++ +++  +EQS+EI+R RID  G  E 
Sbjct: 114 ----------IDPEIIIEVNKNKIKLRYSESRLNDLLNKVVEQSIEIVRMRIDSTGTKEP 163

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            +QR G+  IL+Q+PG  +PS L+ +LG TAK++FH V  N + +  + G   L      
Sbjct: 164 ILQRQGNKHILLQVPGVDNPSYLKNILGKTAKLTFHLVDENANIEEAIKGHIPLDSMLIK 223

Query: 240 ---------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                      +++ KV +SG HL  A+A+FD  + +P+V  SF+ +G++ F E+T++N 
Sbjct: 224 GDSEHHGEYYIVIKKKVLLSGTHLTKASASFDQNS-QPMVAFSFNNLGSKIFTEITKNNT 282

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           GK LA+VLD ++L+AP+IN AI  G   I+GNFTIE+A  LA +LR GSLP  L I+EER
Sbjct: 283 GKRLAIVLDNKLLSAPMINGAIIGGDGIITGNFTIESANELALLLRVGSLPTPLKIIEER 342

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
           ++G +LG+DSI  G  A + G   + +FMI+ YG  GL A+ ++ L ++  LALLSL  A
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFTAVCIFMILSYGVIGLFANIALILALLYILALLSLFQA 402

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI DSN+T 
Sbjct: 403 TLTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATIIDSNLTT 462

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           LI    L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y K + +
Sbjct: 463 LIVAFALYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFKPEKL 515



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I   A+ I++ + +     L A   LIL +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFTAVCIFMILSYGVI-GLFANIALILALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +      +S    I           + +
Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATIIDS 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   +L+ I+    K  ++
Sbjct: 459 NLTTLIVAFALYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVKYFKPEKL 515


>gi|83719393|ref|YP_441822.1| preprotein translocase subunit SecF [Burkholderia thailandensis
           E264]
 gi|167580647|ref|ZP_02373521.1| preprotein translocase subunit SecF [Burkholderia thailandensis
           TXDOH]
 gi|167618751|ref|ZP_02387382.1| preprotein translocase subunit SecF [Burkholderia thailandensis
           Bt4]
 gi|257137991|ref|ZP_05586253.1| preprotein translocase subunit SecF [Burkholderia thailandensis
           E264]
 gi|83653218|gb|ABC37281.1| protein-export membrane protein SecF [Burkholderia thailandensis
           E264]
          Length = 316

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 158/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       +S++  + ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQTAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L +L   D   QNF   +N L+RL  + G + AQ    + V   +        
Sbjct: 61  LEPVRATLGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMAALKAQNADVA 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++ +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|157961299|ref|YP_001501333.1| preprotein translocase subunit SecF [Shewanella pealeana ATCC
           700345]
 gi|157846299|gb|ABV86798.1| protein-export membrane protein SecF [Shewanella pealeana ATCC
           700345]
          Length = 315

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 168/299 (56%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              ++     + F+R       +S +  + SI  L T G+N+G+DF GG  + +  ++P 
Sbjct: 1   MLQVLNVKGTVNFLRHALPISILSAVLVLGSIVTLATKGINWGLDFTGGTVVELEFSKPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL+ +R+NL S  +     QNF   ++ L+RL  +          +  V   +T++    
Sbjct: 61  DLNAIRTNLSSESVAGALVQNFGSSRDVLIRLPVKDDFKSEDQ--VNDVMAAVTQLDSAV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +  E VGP++ +EL  +G + V+++ I +LIY+  RF+W  ALG++  L  D+  TLG
Sbjct: 119 IQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLALGSVAALAHDVIVTLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  +EF+LT +A +LT++GYS+ND +VV+DR+R+N      S+   ++++ SI +T+
Sbjct: 179 VFSLLQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKLRKSLP-EEVVNISITQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T+    + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296


>gi|284006394|emb|CBA71630.1| protein-export membrane protein [Arsenophonus nasoniae]
          Length = 615

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 162/536 (30%), Positives = 275/536 (51%), Gaps = 44/536 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L  A P++L     +          + LGLDLRGG H ++EVD +  ++   +  
Sbjct: 100 IVALNLAPATPHWLRALGGE---------PMKLGLDLRGGVHFLMEVDIETALSKLQEQN 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LRS L+++GI   ++R+I N  + + F D   +      +T   +            
Sbjct: 151 MDGLRSDLREKGIPYSTIRKIDNYGVEIRFRDDNDRSQAESYLTPRYR-----------D 199

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +  T     ++ V++   I +  ++A+ Q++ IIR R++Q+G++E  +QR G+ RI+++
Sbjct: 200 LVFTTGNNNILTAVMTDERIREARNYAVSQNINIIRNRVNQLGVAEPLVQRQGASRIVVE 259

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V           G            DG   ++  +V
Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNVGIDSSAIQRGHIPGDSEIKYTRDGEPVVLYKRV 319

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG---------------- 291
            ++G H+  +T++ D      V        G+        +                   
Sbjct: 320 ILTGDHITDSTSDLDEMGSPQVSIGLDSVGGSIMSDFTRDNQDKLMATLFVEYKDSGRKD 379

Query: 292 -KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
               A+++    +       A    K +I+G      A  L+ +LRAG+L   + IVEER
Sbjct: 380 ANGRAILVKDEKVINVARISARFGSKFRITGISNPTEARQLSLLLRAGALIAPIQIVEER 439

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG- 409
            +G  LG  +I +G  A +AGL+  VLFMI+ Y K+GL+A  ++  N+IL + ++SLL  
Sbjct: 440 TIGPTLGLQNIEQGMKASLAGLLASVLFMIIYYRKFGLIASSALLANLILIMGIMSLLPG 499

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLT+P IAGIVL + +AVD+N+L+NERI+EE +  +S+  ++  G+  A+S+I D+N+T
Sbjct: 500 ATLTMPGIAGIVLTLAVAVDANVLINERIKEELKNGRSIQQAIHEGYKGAFSSILDANLT 559

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            +I   +L+  G G+++GFAIT  + I  SMFTAI   RA++  +   K++K + I
Sbjct: 560 TVITATILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRIKKLSI 615



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 78/177 (44%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   +A ++++ I ++  F L A + L+ ++   +G  +L  
Sbjct: 440 TIGPTLGLQNIEQGMKASLAGLLASVLFMIIYYR-KFGLIASSALLANLILIMGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +K      S +  I +         + 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELK---NGRSIQQAIHEGYKGAFSSILD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+   +   G   I  FAI  A GI  +  ++I     I+  +Y  +    
Sbjct: 556 ANLTTVITATILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRIKK 612


>gi|161615408|ref|YP_001589373.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194445387|ref|YP_002039649.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195873873|ref|ZP_02699376.2| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197247540|ref|YP_002145390.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263808|ref|ZP_03163882.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200390374|ref|ZP_03216985.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205357167|ref|ZP_02345538.2| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205360387|ref|ZP_02683136.2| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|161364772|gb|ABX68540.1| hypothetical protein SPAB_03179 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194404050|gb|ACF64272.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|195631667|gb|EDX50187.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197211243|gb|ACH48640.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242063|gb|EDY24683.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|199602819|gb|EDZ01365.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205323397|gb|EDZ11236.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205349838|gb|EDZ36469.1| protein-export membrane protein SecD [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 615

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 293/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS+ ++              + L    +  ++ +    ++  
Sbjct: 164 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQGGNQLRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 615



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  I++           
Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  + 
Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 609


>gi|66044479|ref|YP_234320.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           syringae B728a]
 gi|71736135|ref|YP_273561.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|63255186|gb|AAY36282.1| SecD/SecF/SecDF export membrane protein:SecF protein [Pseudomonas
           syringae pv. syringae B728a]
 gi|71556688|gb|AAZ35899.1| protein-export membrane protein SecF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322938|gb|EFW79028.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329939|gb|EFW85927.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330892557|gb|EGH25218.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. mori
           str. 301020]
 gi|330984997|gb|EGH83100.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 303

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 160/286 (55%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  ++++ +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIVALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|307261549|ref|ZP_07543217.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868672|gb|EFN00481.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 604

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 278/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 93  NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +                     + +  EIS 
Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIRR-----------VHTALETASISPTEISF 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S++ +      AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 202 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTVLTSLVLYAVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A   L  ++  T+G  +L G
Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAAAALTANMVLTIGLMSLIG 487

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 545 NLTTVLTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602


>gi|438854|gb|AAA74437.1| envD homologue; ORFB [Pseudomonas aeruginosa]
          Length = 1046

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 183/686 (26%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++P+  P               +      
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +              +   T++F      +    +V   LQ 
Sbjct: 54  AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTTTVTFEQGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++             + S  I+    D +  ++   
Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++G          
Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      A L          +           S   
Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            LS        +A        + +   ++ +                + +G +   V   
Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++S++   +  ++      F V      G   +      M+K       
Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++                  +  
Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q   I+ Q      + +        +++   + +      +   +
Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      LPMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +          + G    + ++G     +  +  PG S            K 
Sbjct: 790  VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W      +  + L
Sbjct: 850  LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L   ++ G+  ++     +LT IG S  + +++ +  ++   L+       +   
Sbjct: 907  GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++    L   V TS+A  + V+P+A+    G     +    +  G+V A   +IF
Sbjct: 964  EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018


>gi|160902576|ref|YP_001568157.1| protein-export membrane protein SecF [Petrotoga mobilis SJ95]
 gi|160360220|gb|ABX31834.1| protein-export membrane protein SecF [Petrotoga mobilis SJ95]
          Length = 302

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 7/302 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I F+  R + + +SI   + S+ ++F  G N G+DF GG ++ V  ++   +  +R+
Sbjct: 1   MPNIDFVGKRSFFIYLSIALILFSVIVIFVKGFNLGVDFSGGSEIIVSFDKSYTIDELRN 60

Query: 597 NLESLQIGDISFQNF------DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            L+++     + +             F   +  +      + + + +   + +       
Sbjct: 61  GLQTINQEYATAKIIQTNPGGGASDQFFYIITVRDSFPTLEEKQMFINSLEESFSDSSLN 120

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+    V    +RE+       VIIS I +L YI IRF++ + +GAI  L  D+  TLGF
Sbjct: 121 IEQFNDVSGYAAREIRSYAWYAVIISLIVLLAYITIRFQFSYGVGAILALAHDVIITLGF 180

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           ++LFGIE NLTA+AA LTL GYS+ND +VVYDR+R+N +     +    + +KSINE + 
Sbjct: 181 YSLFGIEMNLTAIAAFLTLAGYSLNDTIVVYDRIREN-RSKNRGMDIESITNKSINEVIV 239

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           RS+ TS+  F+ V  M + GG  I SFA  +  G+++   SS++IA+PI++ +   R K 
Sbjct: 240 RSLNTSLTTFLVVFMMFLLGGRSIASFAFGLTVGVIIGTYSSLYIASPIVIGMVKRRKKT 299

Query: 831 AR 832
            +
Sbjct: 300 QK 301


>gi|329298302|ref|ZP_08255638.1| preprotein translocase subunit SecF [Plautia stali symbiont]
          Length = 322

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/297 (30%), Positives = 160/297 (53%), Gaps = 2/297 (0%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L      + FMR       I  L  + SI ++   G N+G+DF GG  + +   +P DL
Sbjct: 9   QLNHGRKVVDFMRWDTLAFIIFGLLIVASIAIIGVRGFNWGLDFTGGTVIEINLKKPADL 68

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R  L      +   QNF   ++ +VR+    G+   Q    ++V          +T+
Sbjct: 69  DALRDGLVKAGFEEPLVQNFGSSRDVMVRMPPTTGN-AGQVLGNKVVASINQTTQQNATV 127

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  E VGP +  +L + G + ++ + IA+LIYI  RF+W  ALG +  L  D+  T G  
Sbjct: 128 KRIEFVGPSVGSDLAQAGAMALLSALIAILIYIGFRFEWRLALGTVLALAHDVIITCGIL 187

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +LF IE +LT VA+++++IGYS+NDK+VV DR+R+N +      S+ D+ + S+ +TL R
Sbjct: 188 SLFHIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQTLSR 246

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++ TS+     +L + ++GG+++  F++ M  G+ +   SSI++++ + L +   R 
Sbjct: 247 TLITSITTLAMILILFIFGGALLKGFSLTMLIGVTIGTISSIYVSSALALKLGMKRE 303


>gi|262165055|ref|ZP_06032792.1| protein-export membrane protein SecD [Vibrio mimicus VM223]
 gi|262172186|ref|ZP_06039864.1| protein-export membrane protein SecD [Vibrio mimicus MB-451]
 gi|261893262|gb|EEY39248.1| protein-export membrane protein SecD [Vibrio mimicus MB-451]
 gi|262024771|gb|EEY43439.1| protein-export membrane protein SecD [Vibrio mimicus VM223]
          Length = 606

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 152/523 (29%), Positives = 276/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 93  NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEESFRSDLRDEKI 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       T     +   
Sbjct: 153 RYRAIRPLSDAVEVTLRDAEQLSQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 204

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 205 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 264

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 265 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 323

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 324 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 383

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 384 INQATIQSALGRNFRITGIDSPSEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 443

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 444 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 503

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 504 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 563

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 564 GAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRINKLSI 606



 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 360 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPSEAHNLALLLRAGA 419

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 478

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 535

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLM 595

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 596 YGGKRINK 603


>gi|152971334|ref|YP_001336443.1| aminoglycoside/multidrug efflux system [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150956183|gb|ABR78213.1| aminoglycoside efflux pump [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 1037

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  L        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIL-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQMTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W +   +L        L        ++ +G     V
Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++  +   ++ +  + E  F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDPQTGTSFAIIERATKAFNQINEARVIA 664



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A    +     ++ +  P 
Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +          + G    + ++G     +  +  PG S      +       
Sbjct: 789  VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  + +     +   W      +  + L
Sbjct: 849  LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    + G+E ++     +LT+IG S  + +++ +   +   L            
Sbjct: 906  GVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +  + L   + TS+A    VLPMA     G     +    +  G++ A   +IF     
Sbjct: 963  SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022

Query: 820  LLFIYDWRAKNAR 832
             + +        R
Sbjct: 1023 FVLVRRRFPLKER 1035


>gi|146308533|ref|YP_001188998.1| preprotein translocase subunit SecD [Pseudomonas mendocina ymp]
 gi|145576734|gb|ABP86266.1| protein-export membrane protein SecD [Pseudomonas mendocina ymp]
          Length = 622

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 162/526 (30%), Positives = 270/526 (51%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD D  ++   ++Y  E++S L+KE I
Sbjct: 107 NLAQTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSLLRKERI 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              SM +   +I L FADS   E     +             D +   +    ++ + + 
Sbjct: 167 RYRSMPEQGGRIQLGFADSDTLEKAQRLIRKDYN--------DFELTTVERGGQQVLQLA 218

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  I ++  ++I Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 219 LTQAKIAEIREYSIRQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 278

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F      +            R+       +E ++ I+G  +  A A+FD    
Sbjct: 279 GKTANLEFRLQADLD-APRGATETFGFREEGRPPVQLERELIITGDQVTDAQASFDENG- 336

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+I  D  G       TR+N+G+ +AV+   +      +                  
Sbjct: 337 RPQVNIRLDGHGGDLMNRATRNNVGRSMAVIFIEQKPVTRYVRQTVDGVEQEVAVSSFVE 396

Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG++
Sbjct: 397 EKKIISLATIQSALGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAE 456

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  +    ++ + LF+I +Y  +G++A  ++  N++L + L+S +GATLTLP IAG
Sbjct: 457 NIAKGIESTEWAMIFVALFIIAIYRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAG 516

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE      V  ++  GF RAYS I DSN+T L+   +LF 
Sbjct: 517 IVLTLGMAVDANVLIFSRIREELANGLHVQRAIHEGFDRAYSAILDSNLTTLLVGGILFA 576

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I+ SMFTAI   R ++  I   +  K + I
Sbjct: 577 MGTGPVKGFAVTMSLGIITSMFTAIMFTRGLVNLIFGGRNFKKLWI 622



 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 90/250 (36%), Gaps = 5/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                R     V +    S  + +    +    ++ L       G +         +  +
Sbjct: 374 VTRYVRQTVDGVEQEVAVSSFVEEKKIISLATIQSALGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  E I KGI     + I + ++I   +++ F + A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGAENIAKGIESTEWAMIFVALFIIAIYRF-FGVLATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   +G  +  G    L  +A ++  +G +V+  V+++ R+R+ +         +  I
Sbjct: 493 FNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELANGLH---VQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820
            +  +      + +++   +    +   G   +  FA+ M+ GI+ +  ++I     ++ 
Sbjct: 550 HEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIITSMFTAIMFTRGLVN 609

Query: 821 LFIYDWRAKN 830
           L       K 
Sbjct: 610 LIFGGRNFKK 619


>gi|238911458|ref|ZP_04655295.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 604

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 293/524 (55%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS+ ++              + L    +  ++ +    ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQGGNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 604



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  I++           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  + 
Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 598


>gi|171320045|ref|ZP_02909115.1| protein-export membrane protein SecF [Burkholderia ambifaria MEX-5]
 gi|171094704|gb|EDT39748.1| protein-export membrane protein SecF [Burkholderia ambifaria MEX-5]
          Length = 316

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   +N L+RLQ + G + AQ    + V   +    P  +
Sbjct: 61  LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMTALKAQSPDVS 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+ IRF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA+L ++GYSVN+ VV++DR+R+  +     +S  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERRMSVAEVINHAITTTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|307252704|ref|ZP_07534595.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859736|gb|EFM91758.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 604

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 278/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 93  NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +      V++ L         V+ +  E  +
Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIR----RVHTALEAASISPTEVSFSPSESGL 208

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
                        AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 209 -------ATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A T L  ++  T+G  +L G
Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 487

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602


>gi|303250185|ref|ZP_07336387.1| preprotein translocase subunit SecD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302651248|gb|EFL81402.1| preprotein translocase subunit SecD [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 615

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 278/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 104 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +      V++ L         V+ +  E  +
Sbjct: 164 QYKAVKKGENFATVIEFADEETANKAIRYIR----RVHTALEAASISPTEVSFSPSESGL 219

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
                        AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 220 -------ATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 273 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 331

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 332 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 392 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 452 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 511

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 512 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 571

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 572 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 614



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A T L  ++  T+G  +L G
Sbjct: 440 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 498

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 499 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 555

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 556 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 613


>gi|254253199|ref|ZP_04946517.1| SecD/SecF/SecDF export membrane protein [Burkholderia dolosa
           AUO158]
 gi|124895808|gb|EAY69688.1| SecD/SecF/SecDF export membrane protein [Burkholderia dolosa
           AUO158]
          Length = 316

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 159/306 (51%), Gaps = 6/306 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  L   GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFVAAVFFLLHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  L  L   D   QNF   +N L+RLQ + G + AQ    E V   +    P  T
Sbjct: 61  LEPVRDTLGKLGYADAQVQNFGTSRNVLIRLQLKQGLTSAQQS--EQVMTALKAQSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+  RF+W +A+  +   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA+L ++GYSVN+ VV++DR+R+  +     +S +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMSVQEVINHAITTTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA-- 828
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 829 -KNARI 833
            K  ++
Sbjct: 298 IKEKKV 303


>gi|330969086|gb|EGH69152.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 303

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 160/286 (55%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVADA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  ++++ +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIVALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|310643548|ref|YP_003948306.1| preprotein translocase subunit secf [Paenibacillus polymyxa SC2]
 gi|309248498|gb|ADO58065.1| preprotein translocase subunit SecF [Paenibacillus polymyxa SC2]
          Length = 304

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 83/297 (27%), Positives = 155/297 (52%), Gaps = 8/297 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +      ++++   W    SI+ ++  I  L   GLNYG+DF+ G  + V   + V    
Sbjct: 1   MRFNWDYKYVKMSKWFYTFSIIVTLLGILSLSIFGLNYGVDFRSGSNVDVNLTKVVTQEQ 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           ++S L+   IG         E+  +   Q          + +   K    + +       
Sbjct: 61  IQSLLDEKGIGKEVDYTPGKERFGIRFSQV------LTDQQVNDFKTSFNKELDPKASFE 114

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              V  ++++EL R  I  V+++++A+ IYI IRF+W FA+ AI +L+ D    +  F++
Sbjct: 115 VNTVDTEMAQELERNAIWAVLLASVAIAIYISIRFEWRFAVAAIVSLLHDAFLVISIFSI 174

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGR 771
           F +E +LT + A+LT++G+S+ND VV++DR+R+N++     +      ++D SI +T+ R
Sbjct: 175 FRLEVDLTFITAILTIVGFSINDTVVIFDRIRENLRFAKKKSRADLEQVVDHSIAQTMTR 234

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S+ T    FI+ + + ++GG  I  F++ M  G++  A SSIFIA+P+ + +   + 
Sbjct: 235 SLATVFTVFIASVCLFIFGGESIRMFSLAMVIGLLFGAYSSIFIASPLWVALKGKQK 291


>gi|329120263|ref|ZP_08248931.1| protein-export membrane protein SecD [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462604|gb|EGF08927.1| protein-export membrane protein SecD [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 616

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 163/506 (32%), Positives = 270/506 (53%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           + +   P  M     N + LGLDLRGG H  ++VD    +    + Y+ ++R  L K+ I
Sbjct: 104 NQIANTPDWMAKIRANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYAGDIRRELAKQKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                    N +++ F D+   EN+  ++   L                +TT    + + 
Sbjct: 164 RSGQAVINDNSLSIPFQDAAELENVLPQLQRLLPEA------------TLTTDGSRLVLT 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  +  +   A+EQ++  +  R++++G++E  IQ+ G+ RI +QLPG QD ++ + ++
Sbjct: 212 LSEQALANIRKQAVEQNITTLHNRVNELGVAEPVIQQAGADRIAVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRD--------SDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +                           L+  +VE++G ++    
Sbjct: 272 GRTATLEVRMVNEDQAALQAALDGNVPEGYELLKTAGDRPQPLLISKQVELTGDNI-DDA 330

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
                    P V++SFD +GA  F ++TR+N+GK +A+VL  +    V+TAP IN+ IP+
Sbjct: 331 QPGQNDKGLPGVNVSFDNVGAEIFADLTRNNVGKGMAMVLVEQGKAEVVTAPTINEPIPN 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           GK  ISG+ ++  A  ++ +LRAGSL   + IVEER +GA LG+++I KG  + + G   
Sbjct: 391 GKTIISGSMSLAEAQDISLLLRAGSLAAPMEIVEERTIGASLGAENIQKGVHSTLWGFAA 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           + +FM+  Y   G  +  ++  N++L +A LS L ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VAVFMMFYYRLMGFFSVLALAANILLLVAALSFLHATLTLPGIAAMALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++  G+  A+ TI DSNIT+LIA + L  FG G VRGFA+   +
Sbjct: 511 NERIREELRDGMKPQAAIAEGYKHAWDTIVDSNITSLIAGIALLLFGSGPVRGFAVVHCI 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            IL SMF+++ + R  +      ++ 
Sbjct: 571 GILTSMFSSVVVSRMFVNLWYGRRRK 596



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 82/208 (39%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +G  +  E I+KG+   +    A+ 
Sbjct: 393 TIISGSMSLAEAQDISLLLRAGSLAAPMEIVEERTIGASLGAENIQKGVHSTLWGFAAVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++   ++      ++  L  +I   +   +       L  +AA+   +G +++  V++ 
Sbjct: 453 VFMMFYYRL-MGFFSVLALAANILLLVAALSFLHATLTLPGIAAMALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I +         V +++ + I+ + + ++G   +  FA+  
Sbjct: 512 ERIREELRD---GMKPQAAIAEGYKHAWDTIVDSNITSLIAGIALLLFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ ++   +   Y  R K
Sbjct: 569 CIGILTSMFSSVVVSRMFVNLWYGRRRK 596


>gi|323143766|ref|ZP_08078434.1| export membrane protein SecF [Succinatimonas hippei YIT 12066]
 gi|322416479|gb|EFY07145.1| export membrane protein SecF [Succinatimonas hippei YIT 12066]
          Length = 315

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 173/306 (56%), Gaps = 5/306 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               I + + I FM+ +        +  I  I ++   GLN+G+DF GGI +    + P+
Sbjct: 1   MMQFIKEGVVIPFMKIKEIVEICVTILVISCIAVMAIKGLNWGLDFTGGIVVETKYSEPM 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL  VR       +     Q+F    + ++R+  + G  + Q  V + V     ++ P +
Sbjct: 61  DLEKVREAYAQQGVEG-VTQHFGSTSDVMIRVAPKEG--LNQQIVADKVMTAAKQLDPNA 117

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           T+  +E VGP +  EL++ GI+ +++S IA+L YI  RF+W  A GA+ +L  D+   LG
Sbjct: 118 TLSRSEYVGPAVGEELVQSGILAIVVSLIAILAYIAFRFEWRMATGAVISLAYDVIVVLG 177

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+ + IE++LT +AAVLT++GYS+NDK+VV+DR+R+N    +  +S   L D S+ +TL
Sbjct: 178 VFSFWQIEYDLTVLAAVLTVVGYSLNDKIVVFDRIRENASRVSRDVSMEHLFDISLTQTL 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA--PILLFIYDWR 827
            R++ TS    I+V+ + V+GGS+I  FA+ +  GIV    SSI++A+  P+LL I    
Sbjct: 238 SRTIITSGTTLITVICLLVFGGSLIFGFALAVTIGIVFGTFSSIYVASTWPLLLKIQRRH 297

Query: 828 AKNARI 833
               +I
Sbjct: 298 ILPMKI 303


>gi|91790474|ref|YP_551426.1| preprotein translocase subunit SecD [Polaromonas sp. JS666]
 gi|91699699|gb|ABE46528.1| protein-export membrane protein SecD [Polaromonas sp. JS666]
          Length = 624

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 160/519 (30%), Positives = 273/519 (52%), Gaps = 27/519 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL   P +L                + LGLDLRGG H +L+VD    +    +  
Sbjct: 105 VVALNLLSRSPAWLTSLHA---------FPMYLGLDLRGGVHFMLQVDMQAALTKRAESL 155

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           S ++R  L+++ I    + +    I +   DS    +    +             D +  
Sbjct: 156 SGDIRLSLREKNIRHGGISRNAQAIDIKVRDSETLASAKALIQDQF--------PDLQTV 207

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +   TE +++  +      ++   A++Q+M  +  RI+++G++E  IQ+ G  RI++QL
Sbjct: 208 DVPEGTEYKLTASIKPEAARRIQDQALKQNMVTLHNRINELGVAEPVIQQQGLDRIVVQL 267

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP-------NNSKKGFMFGVRFLRDSDGNQYLVEDK 246
           PG QD ++ + +LG TA +    V          N+     FG     + +G   +V+ +
Sbjct: 268 PGVQDTAKAKDILGRTATLEMRLVEDSAEARAAENNTGAVPFGTERFFERNGQAVIVKKQ 327

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VL 303
           V ++G +L  A   FD +  +P VD++ D  G R   + +R+N+ K +A++L  +    +
Sbjct: 328 VILTGENLTDAQPGFDSQNQQPKVDLTVDAKGGRIMRDTSRENLKKRMAILLFEKGKGEV 387

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               + Q+    + QISG+ ++  A  LA +LRAGSL   + I+EER +G  LG+D+I K
Sbjct: 388 LTAPVIQSELGNRFQISGSMSVSEANDLALLLRAGSLAAPMEIIEERTIGPTLGADNISK 447

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  ++  G V+IV FM   Y  +GL++  ++ +N++L +A+LS+L ATLTLP +A + L 
Sbjct: 448 GFHSVSWGFVVIVAFMAAYYMLFGLISGLALAVNLLLLVAVLSMLQATLTLPGMAAMALA 507

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+A+DSN+L+NER+REE R   S   ++  G+ RA++TI DSN + LI  + L  FG G
Sbjct: 508 LGMAIDSNVLINERVREELRNGASAQAAIHAGYERAWATILDSNTSTLIVGLALLAFGSG 567

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            VRGFA+   + IL SMF+A+   R ++      +K   
Sbjct: 568 PVRGFAVVHCIGILTSMFSAVFFSRGLVNLWYGRQKKLK 606



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 81/209 (38%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G           +  +   +     I     +GP +  + I KG   V    + ++ ++
Sbjct: 404 SGSMSVSEANDLALLLRAGSLAAPMEIIEERTIGPTLGADNISKGFHSVSWGFVVIVAFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F L +   L +++   +   ++      L  +AA+   +G +++  V++ +R+
Sbjct: 464 AAYY-MLFGLISGLALAVNLLLLVAVLSMLQATLTLPGMAAMALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I           + ++ +  I  L +  +G   +  FA+    G
Sbjct: 523 REELR---NGASAQAAIHAGYERAWATILDSNTSTLIVGLALLAFGSGPVRGFAVVHCIG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  + K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGRQKKLKTV 608



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 29/120 (24%), Gaps = 25/120 (20%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   +  +   I  L  LPNF  ++                           +++ 
Sbjct: 3   RYPAWKYAIIVVALLIAALYTLPNFFGEAPA-------------------------VQIS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                          +   LK  GI    +      +   F D+  +    D V   L  
Sbjct: 38  SGKSTVKIDTTTMARVEQALKDVGITADVIALEGTSVKARFGDTDTQLKAKDAVQKALSP 97


>gi|28868623|ref|NP_791242.1| protein-export membrane protein SecF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971535|ref|ZP_03399646.1| protein-export membrane protein SecF [Pseudomonas syringae pv.
           tomato T1]
 gi|301386140|ref|ZP_07234558.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060702|ref|ZP_07252243.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           tomato K40]
 gi|302135103|ref|ZP_07261093.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28851861|gb|AAO54937.1| protein-export membrane protein SecF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923727|gb|EEB57311.1| protein-export membrane protein SecF [Pseudomonas syringae pv.
           tomato T1]
 gi|330965898|gb|EGH66158.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331019397|gb|EGH99453.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 303

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 159/286 (55%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  +++  +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAISALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|294140347|ref|YP_003556325.1| protein-export membrane protein SecD [Shewanella violacea DSS12]
 gi|293326816|dbj|BAJ01547.1| protein-export membrane protein SecD [Shewanella violacea DSS12]
          Length = 616

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 164/522 (31%), Positives = 271/522 (51%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EV   + V   ++    + R+ L+ E I
Sbjct: 104 NLAPATPEWLEAMGGSPMKLGLDLRGGVHFLMEVKMGEAVRKMVESKMADFRTDLRGERI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R+    I + F D+         +             D       +     +   
Sbjct: 164 RYAGIRESAKGIEIKFRDADNLAKAERFLKSRGN--------DMVFTDSSSDGNYYLIAN 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS+  + QV   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 LSETYLKQVKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V           G      +      G Q  +  +V +SG H+ GA  +F
Sbjct: 276 GATASIEFHMVDEKADAAAIASGRISANAKIYDRRQGGQVALYKEVMLSGTHIQGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP--------------- 306
           D  + +P V I+ D  G   F  VT+DNIGKP+A +                        
Sbjct: 336 DEYS-RPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGAKNPDGSIKLERIEEV 394

Query: 307 --VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
             V       G+  +        A  LA +LRAG+L   + IVEER +G  LG+ +I  G
Sbjct: 395 ISVATIQARLGRNFVITGLDHSEAQNLALLLRAGALIAPVVIVEERTIGPSLGAQNIQNG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+ ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 MEAMIWGMAVVLIFMLVYYRAFGLIANLALTANLVMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE R  +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIYERIREELRNGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFTAI   RA++  +   K++K + I
Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKRVKKLSI 616



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 90/234 (38%), Gaps = 6/234 (2%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            S+++  I            +   +              +  +   ++    I     +G
Sbjct: 384 GSIKLERIEEVISVATIQARLGRNFVITGLDHSEAQNLALLLRAGALIAPVVIVEERTIG 443

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIE 717
           P +  + I+ G+  +I     +LI++ + ++  F L A   L  ++   +G  ++  G  
Sbjct: 444 PSLGAQNIQNGMEAMIWGMAVVLIFMLVYYR-AFGLIANLALTANLVMVVGVMSMIPGAV 502

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I +            ++
Sbjct: 503 LTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHEGYGNAFSTIADANI 559

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
             F++ L +   G   +  FA+ +  GI  +  ++I     I+       R K 
Sbjct: 560 TTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKRVKK 613


>gi|329905135|ref|ZP_08274054.1| Protein-export membrane protein SecF [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547695|gb|EGF32480.1| Protein-export membrane protein SecF [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 312

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 167/302 (55%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FMR       IS L  + ++  LF +GL++ I+FKGG  + V    P +
Sbjct: 1   MELFRIKKTIPFMRHALIFNAISALTFVLAVFFLFHNGLHFSIEFKGGTLIEVSYKTPAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR  +ESL   D   Q+F   ++ ++RL  +PG + AQ      V + +        
Sbjct: 61  IEQVRQTVESLGYTDNQVQSFGKAEDVMIRLPSRPGVNTAQQS--SKVLEALKLRDADVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++  EL + G+  + +  + ++IY+ IRF+W +A+ AI   + D+   LGF
Sbjct: 119 LRRVEYVGPQVGAELAQNGLTALAMVIVGIMIYLAIRFEWKYAVSAIIANLHDVIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+LT +AAVL ++GYSVN+ VVV+DR+R+N +    + S  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLTVLAAVLAVLGYSVNESVVVFDRIRENFRTQRKT-SVVEVIDSAITSTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R+V T  +  + VL M ++GG  +  FA+ +  GI+    SS+F+AA + +++   R   
Sbjct: 238 RTVITHGSTQMMVLSMLLFGGPSLHYFAVALTIGILFGIYSSVFVAAAVAMWLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|260655924|ref|ZP_05861393.1| protein-export membrane protein SecF [Jonquetella anthropi E3_33
           E1]
 gi|260629540|gb|EEX47734.1| protein-export membrane protein SecF [Jonquetella anthropi E3_33
           E1]
          Length = 297

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 89/293 (30%), Positives = 152/293 (51%), Gaps = 2/293 (0%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +    A  FM+ R + + ++ + ++    L+   G N GIDF GG  L V  + P+ +  
Sbjct: 1   MKKPFAFPFMKYRKFFIALACVMAVTGALLVLCIGFNKGIDFTGGNLLQVEFSDPISVGA 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR+ L        + Q F  ++   +R Q     +  Q     ++            + +
Sbjct: 61  VRAELAKEGYARATIQAF-SDRGVNIRFQGTEEGADDQALRDSLMAALDKIQAGKVKLLS 119

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
            E+VGP +  EL  + ++   ++ I +LIY+  RF++ FA+ ++  L+ D    LGFF L
Sbjct: 120 FEMVGPTVGGELTHQAVLATTLALIGILIYVAFRFQFRFAVVSVLALVHDTMIVLGFFCL 179

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F  E  +  +AA+LT +GYS+ND +V+ DR+R+N K    +I    L+D SIN+TLGR+V
Sbjct: 180 FHREIAMPFIAAILTTVGYSLNDTIVIMDRVRENWKQ-RRTIGMAALMDNSINQTLGRTV 238

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            T++  F+ VL   + GG V+ +F++ +  GI+    SS+      L+F YD 
Sbjct: 239 NTTVTTFMPVLAFYLLGGPVLANFSLALMIGIIAGTFSSLCFTTSALVFWYDK 291


>gi|238026271|ref|YP_002910502.1| preprotein translocase subunit SecF [Burkholderia glumae BGR1]
 gi|237875465|gb|ACR27798.1| Protein export protein SecF [Burkholderia glumae BGR1]
          Length = 316

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 157/298 (52%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  L   GL+  ++F GG  L V   +  +
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLVHRGLHLSVEFTGGTVLEVQYQQAAE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   Q+F   +N ++RL  + G + AQ    + V   +    P   
Sbjct: 61  LEPVRAALGKLGYADAQVQSFGTSRNVMIRLALKSGLTSAQQS--DQVMAGLKAQNPDVQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++ +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERRMTVQEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R+V T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R 
Sbjct: 238 RTVITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIRRE 295


>gi|78185900|ref|YP_373943.1| preprotein translocase subunit SecF [Chlorobium luteolum DSM 273]
 gi|78165802|gb|ABB22900.1| protein translocase subunit secF [Chlorobium luteolum DSM 273]
          Length = 311

 Score =  209 bits (530), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 146/309 (47%), Gaps = 11/309 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I +  +I F+R R    G+S+   +     L   GLNYGIDF+GG ++ +   + V +
Sbjct: 1   MRIFNSTSINFLRYRKIAYGVSLAILLAGFVSLAVKGLNYGIDFRGGSEVVIRFEKDVPV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             VRS L    +     Q      +    L           ++L               I
Sbjct: 61  GEVRSVLRDAGVSGTLKQYGL---DRSFLLSTVFSGETNDLKLLITSALNARMKDAPHEI 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP I+ +L    +  ++ + +A+L+Y+ IRF+  FA   +  +  D+   LG F
Sbjct: 118 VRIDAVGPSIASDLKWSAVKAMVAALLAILLYVGIRFELKFAAAGVVAIFHDVLIVLGLF 177

Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           +L G       +E + + +AA LT+ GYS+ D VVVYDR+R+ ++       +  + ++S
Sbjct: 178 SLLGGVFDVMPLEMDQSIIAAFLTIAGYSITDTVVVYDRIRERIR-NQKPSEYERIFNES 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +N+TL R++ TS    ++V  + ++ G  I  FA  +  GI++   SSIF+AAP++    
Sbjct: 237 MNQTLSRTIITSGTTLLTVFVLFLFAGPAIRGFAFAVFAGILIGTYSSIFVAAPLVFDWL 296

Query: 825 DWRAKNARI 833
                  R+
Sbjct: 297 RLSKTPVRL 305


>gi|327398933|ref|YP_004339802.1| protein-export membrane protein SecD [Hippea maritima DSM 10411]
 gi|327181562|gb|AEA33743.1| protein-export membrane protein SecD [Hippea maritima DSM 10411]
          Length = 534

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 183/546 (33%), Positives = 292/546 (53%), Gaps = 33/546 (6%)

Query: 1   MRNNPW-LVILYSMICCIGLLIALPNFLPQSML----DRFPSAMPKNRISLGLDLRGGSH 55
           M+ + W  + +  ++  +     LP  + +         F + +P + I+LGLDL+GG H
Sbjct: 1   MKTSIWIKLTIIIVVVAVFGAYTLPTLIGKKSAKDFSSMFSNILPTDTINLGLDLKGGMH 60

Query: 56  LVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI--QNKITLSFADSRFKENIAD 113
           LVL VD D  V   L   +D L+  L    I   S+       KIT+   D+   +   +
Sbjct: 61  LVLGVDTDKAVYVVLSRAADNLQQQLTNARIAADSVVPSLKDYKITIHLVDTHDLDKAIN 120

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +                 N  V +    I I L ++ + ++   AIEQ++ +IR R++Q
Sbjct: 121 LIISNF------------PNYAVISDSNPIVIQLKKDVVAKIKERAIEQAISVIRNRVNQ 168

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
            G++E T+ R G   I++ LPG ++ +R  +LLG TA++  H V    S    + G    
Sbjct: 169 FGVTEPTVVRAGGDHIVVDLPGIKNANRAVRLLGETARLELHLVDDKVSVADALNGELPA 228

Query: 234 RDSD--------------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
            D                   ++V+ +  I+G  +  AT  F    ++P V    +  GA
Sbjct: 229 DDEILYQIQRDPTTGEDTKVPFVVKKEPVITGDMITNATVRFGGTMNQPYVAFELNSEGA 288

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
           + F   T  +IGK LA+VLD  + +APVI   I  G+ QI+GNFT+E A  LA +LR+GS
Sbjct: 289 KIFANFTATHIGKRLAIVLDNLIYSAPVIQSRIGGGRGQITGNFTLEEAHDLALVLRSGS 348

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           LP  + ++++  +G  LG  SI KG  A++ G + ++LFMI  Y   GL+AD ++ LN+I
Sbjct: 349 LPAPVKVLQKVTIGPSLGKISIEKGKKAMIFGALAVILFMIFYYKLSGLLADLALILNII 408

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           +    + +L ATLTLP IAGI L +G+AVD+N+L+ ERIREE    +S+  +++ G++RA
Sbjct: 409 IIFGTMVMLHATLTLPGIAGIALTVGMAVDANVLIYERIREELLIGRSIHDAVNTGYARA 468

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           + TI D+NIT LI  ++L+ FG G V+GFAITM + +L +MFTAI+  + +   ++   K
Sbjct: 469 FITILDANITTLIIALILYQFGSGPVKGFAITMAIGLLANMFTAITFTKTIFDIVLDRFK 528

Query: 520 MKSIDI 525
              + I
Sbjct: 529 PSKLSI 534



 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP + +  I KG   +I  A+A+++++   +K    L A   LIL+I    G   +  
Sbjct: 360 TIGPSLGKISIEKGKKAMIFGALAVILFMIFYYKLS-GLLADLALILNIIIIFGTMVMLH 418

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A +   +G +V+  V++Y+R+R+ + +     S  D ++          +  
Sbjct: 419 ATLTLPGIAGIALTVGMAVDANVLIYERIREELLI---GRSIHDAVNTGYARAFITILDA 475

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   I  L +  +G   +  FAI MA G++    ++I     I   + D    + 
Sbjct: 476 NITTLIIALILYQFGSGPVKGFAITMAIGLLANMFTAITFTKTIFDIVLDRFKPSK 531


>gi|149191585|ref|ZP_01869831.1| protein export protein SecD [Vibrio shilonii AK1]
 gi|148834603|gb|EDL51594.1| protein export protein SecD [Vibrio shilonii AK1]
          Length = 618

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 153/524 (29%), Positives = 278/524 (53%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N + LGLDLRGG H ++EVD D  +   +    +  RS L+++ I
Sbjct: 104 NLAPATPNWLESIGANPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREDRI 163

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+R    + + +   D+         +T          + D       +     +  
Sbjct: 164 RYRSIRPSGKDGVEVLLRDAEQLAEAKAVLTTK--------HPDMDFFDSDSNGRFALVA 215

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
              +  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 216 RFKETRLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275

Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V  +             G    +D DG   +++ +V + G  +    ++
Sbjct: 276 LGATATLEFREVDSSADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILGGASITD-ASS 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    +R NIGK +A V                       
Sbjct: 335 SADEYGRPQVNISLDSEGGNKMAAFSRQNIGKLMATVFAEYKDSGKRTPEGKVILDKHEE 394

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 395 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A + G++ ++LF +V Y ++GL A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 455 MGIKACITGMIAVMLFTLVYYRRFGLFANMALMANIVLIVGVMSMIPGATMTLPGIAGIV 514

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE ++ ++   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 515 LTVGMAVDANVLIFERIREELKEGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + I+ SMFTAI   R ++  +   K++  + I
Sbjct: 575 TGAIKGFAVTLSIGIITSMFTAIIGTRCLVNLVYGGKRINKLSI 618



 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 91/213 (42%), Gaps = 5/213 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   IA
Sbjct: 407 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIKACITGMIA 466

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F L A   L+ +I   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 467 VMLFTLVYYR-RFGLFANMALMANIVLIVGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ +K      + +  I +            ++   I+ + +   G   I  FA
Sbjct: 526 LIFERIREELKE---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 582

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++ GI+ +  ++I     ++  +Y  +  N 
Sbjct: 583 VTLSIGIITSMFTAIIGTRCLVNLVYGGKRINK 615


>gi|187922708|ref|YP_001894350.1| preprotein translocase subunit SecF [Burkholderia phytofirmans
           PsJN]
 gi|187713902|gb|ACD15126.1| protein-export membrane protein SecF [Burkholderia phytofirmans
           PsJN]
          Length = 316

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 155/302 (51%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS+L  + ++  L   GL+  ++F GG  + V       
Sbjct: 1   MEFFRFRKDIPFMQRALIFNAISLLTFLAAVFFLLHRGLHLSVEFTGGTVVEVQYPGAAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   ++ L+RL  + G + AQ    + V   +    P   
Sbjct: 61  LEPVRATLGKLGYADAQVQNFGTSRDVLIRLPLKQGYTSAQQS--DQVMTALKAETPQVQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +    + ++IY+  RF+W +A+  +   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVVGIVIYLSFRFEWKYAVAGVIANLHDVIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKLTVIEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T     + VL M ++GG  +  FA+ +  GI+    SS+F+AA + ++    R   
Sbjct: 238 RTIITHGCTQMMVLSMFLFGGPTLHYFALALTVGILFGIYSSVFVAAALAMWFSVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|257487216|ref|ZP_05641257.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331009169|gb|EGH89225.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 303

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 94/286 (32%), Positives = 160/286 (55%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  ++++ +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIIALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|167623488|ref|YP_001673782.1| preprotein translocase subunit SecF [Shewanella halifaxensis
           HAW-EB4]
 gi|167353510|gb|ABZ76123.1| protein-export membrane protein SecF [Shewanella halifaxensis
           HAW-EB4]
          Length = 315

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 168/299 (56%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              ++     + F+R        S +  + SI  L T G+N+G+DF GG  + +  ++P 
Sbjct: 1   MLQILNVKGTVNFLRHALPISIFSAVLVLGSIATLATKGINWGLDFTGGTVVELEFSKPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +LS +R+NL +  +G    QNF   ++ L+RL  +          +  V   +T++    
Sbjct: 61  NLSAIRTNLSTEAVGGAVVQNFGSSRDVLIRLPVKDDFKSVDQ--VNDVMDAVTKLDSSV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +  E VGP++ +EL  +G + V+++ I +LIY+  RF+W  A+G++  L  DI  TLG
Sbjct: 119 IQKRVEFVGPQVGKELAEQGGLAVLVALICILIYVSFRFEWRLAVGSVAALAHDIIVTLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  +EF+LT +A +LT++GYS+ND +VV+DR+R+N      S +  ++++ SI +T+
Sbjct: 179 VFSLLQLEFDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKLRKS-TPEEVVNISITQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T+    + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296


>gi|307250320|ref|ZP_07532270.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307257112|ref|ZP_07538885.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306857647|gb|EFM89753.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306864383|gb|EFM96293.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 604

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 93  NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +      + +            + +  EIS 
Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S++ +      AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 202 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A T L  ++  T+G  +L G
Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 487

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602


>gi|257455238|ref|ZP_05620473.1| protein-export membrane protein SecD [Enhydrobacter aerosaccus
           SK60]
 gi|257447200|gb|EEV22208.1| protein-export membrane protein SecD [Enhydrobacter aerosaccus
           SK60]
          Length = 631

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 155/526 (29%), Positives = 275/526 (52%), Gaps = 45/526 (8%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N I LGLDLRGG   VLEVD    V+  L+  + ++R+ L+ + I
Sbjct: 105 NLAQTTPAWLRNIGGNPIKLGLDLRGGVRFVLEVDMSKTVSQRLENLTRDIRTELRNQKI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            V +++  QN +TL+F D+  ++   + +             + +   L+      I++ 
Sbjct: 165 AVTNLQAGQNNLTLNFVDNAARDQAINVLRSRFG-------TNYELQPLINAGGPAINMT 217

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q+ I Q+   A+ Q++  +R RI+++G++E+ +Q  G++RI+++LPG QD +  ++++
Sbjct: 218 LTQSTISQISQDAVTQNLTTLRNRINELGVAEAVVQSQGANRIVVELPGVQDTAEAKRVI 277

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY---------LVEDKVEISGIHLNGA 257
           G TA + F  V   N+             ++   +         L+E +  ++G ++   
Sbjct: 278 GRTANLEFRMVSEQNNTFQANPSGVLPAGTEAYSFGEVDSPQKTLLERQAVVTGRNVQD- 336

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----------------------- 294
                 +  +P V+I+ D  G R     T  ++GK +                       
Sbjct: 337 AQAGMDQNGRPQVNITLDNAGGRLMQNTTAKSVGKQMAVLFIENKQRVTFQPDPVTGQNK 396

Query: 295 --AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                     +      Q +     QI+G  +   A  LA +LRAG+L   +  VEER +
Sbjct: 397 EVRTPYAESHIINQATIQGVFGSTFQITGLDSNAEASELALLLRAGALAAPMYFVEERTI 456

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG D+I KG  +   G +L+ LFMI+ Y  +GL+A+ ++  N+++ LA++SL+G+ L
Sbjct: 457 GPSLGQDNIQKGMFSTQVGYLLVFLFMIIFYRLFGLIANIALIFNLMMILAIMSLIGSAL 516

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAGIVL IG+AVD+N+L+ ERIREE         ++  GF+RA+++IFD+ +T LI
Sbjct: 517 TLPGIAGIVLTIGMAVDANVLIFERIREELANGARPKSAIVAGFNRAFTSIFDAQLTTLI 576

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
              +LF  G G ++GFA+T+ + I  S+FT++++ RA++     Y+
Sbjct: 577 VAFILFAIGTGPIKGFAVTLAIGIASSIFTSVTVTRALVQLAYGYR 622



 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 88/250 (35%), Gaps = 4/250 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 D    ++        +    N    +          G           +  +  
Sbjct: 383 RVTFQPDPVTGQNKEVRTPYAESHIINQATIQGVFGSTFQITGLDSNAEASELALLLRAG 442

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +           +GP + ++ I+KG+    +  + + +++ I ++  F L A   LI +
Sbjct: 443 ALAAPMYFVEERTIGPSLGQDNIQKGMFSTQVGYLLVFLFMIIFYRL-FGLIANIALIFN 501

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L   +L G    L  +A ++  IG +V+  V++++R+R+ +         +  I  
Sbjct: 502 LMMILAIMSLIGSALTLPGIAGIVLTIGMAVDANVLIFERIREELA---NGARPKSAIVA 558

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             N          +   I    +   G   I  FA+ +A GI  +  +S+ +   ++   
Sbjct: 559 GFNRAFTSIFDAQLTTLIVAFILFAIGTGPIKGFAVTLAIGIASSIFTSVTVTRALVQLA 618

Query: 824 YDWRAKNARI 833
           Y +R    R+
Sbjct: 619 YGYRKTVKRL 628



 Score = 38.5 bits (87), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/44 (22%), Positives = 15/44 (34%)

Query: 1  MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44
          M    W   L  ++  +  L ALPN  P     +   A     +
Sbjct: 1  MHYPAWKYFLIGIVLLLSTLYALPNLYPDKPAVQITGASASTTL 44


>gi|116751339|ref|YP_848026.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116700403|gb|ABK19591.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 1052

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 79/661 (11%), Positives = 177/661 (26%), Gaps = 30/661 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GL+  L        ++++P   P   +            V     
Sbjct: 9   RPIFANVIAIVTIIFGLVTLL-----LLPVEQYPQITPPTVL---------VSTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + ++       +     +  +T++F      +     V   +  
Sbjct: 55  AEVVADTVAAPIEQQVNGVEHMLYMSSNSANDGSYSLTVTFEVGTNLDMAQVLVQNRVAI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D K+  +    +    I     +        +  S        D++   E   
Sbjct: 115 AEPTLPDDVKRQGVNVQKQSTSFIQFIALSSPDGSHDDLFLSNYATLNVRDELSRIEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L+    TT  +       N        G          QY
Sbjct: 175 NVSVMGSASYSMRVWLDPEKLKSRSLTTQDVVDAIQEQNVQVAAGQIGQPPAPAGQNFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +S +             +  V   +  ++GAR         +     V     
Sbjct: 235 TVTTLGRLSDVE---------QFQNIIVKTTADSQVGARITRVKDVARVELGGQVYDQYF 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +            A L           +          S   
Sbjct: 286 QMHGKPAAGIGIYQLPGANALDVSTKVSKKMAELSKSFPAGVTYDIPFDTTRFVTASIHE 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LVLIV+ + +   +  LV   ++ + +I   A ++ LG T+ + ++ G++
Sbjct: 346 VYKTLIEAGILVLIVILVFLQDWRAVLVPATTVPVTIIGAFAAMAALGFTVNILTLFGLI 405

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E       +      +           +    +  +   +   F G
Sbjct: 406 LAIGIVVDDAIVIVENAAHHIERGLPPREATIKAMDEIIGPVIGITLVLMAVFLPTAFLG 465

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-MKSIDINPLSRFFLIPDC 537
              G   R FA+T+  + +IS   A+++  A     +R     +++     +  +   + 
Sbjct: 466 GITGQLYRQFALTIAATAVISAINAVTLKPAQCALWLRKNPEHRNLFFRGFNAVYSRCEH 525

Query: 538 IA--IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           +   +     R     + +   +          L  G          + +    D +   
Sbjct: 526 VYSIMIAWMVRHTVAMLILFAVLIGSATWGFLALPTGFLPTEDQGYAIASVLLPDAASQE 585

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              E +   +       G  ++L    Y   D    +                    + E
Sbjct: 586 RTREVVAKMNDMIAKTPGVVDYLTVGGYSVLDGTGASNAAAFWIIFKDWKERKDPSLSQE 645

Query: 656 I 656
            
Sbjct: 646 A 646



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 11/235 (4%)

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
              +  +   G   + +        S   ++ +  + K     V      +T        
Sbjct: 284 YFQMHGKPAAGIGIYQLPGANALDVSTKVSKKMAELSKSFPAGVTYDIPFDTTRFVTASI 343

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            E+ +  I   I+  I +L+++     W   L   TT+ + I       A  G   N+  
Sbjct: 344 HEVYKTLIEAGILVLIVILVFLQ---DWRAVLVPATTVPVTIIGAFAAMAALGFTVNILT 400

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSINETLGRSVYTSMAAFI 781
           +  ++  IG  V+D +V+     +N   +    +  R+   K+++E +G  +  ++    
Sbjct: 401 LFGLILAIGIVVDDAIVIV----ENAAHHIERGLPPREATIKAMDEIIGPVIGITLVLMA 456

Query: 782 SVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             LP A  G   G +   FA+ +A   V++A +++ +             ++  +
Sbjct: 457 VFLPTAFLGGITGQLYRQFALTIAATAVISAINAVTLKPAQCALWLRKNPEHRNL 511



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 55/162 (33%), Gaps = 9/162 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +I     +L+Y+ +      W      I  + L +  T+   AL   + N+     ++ L
Sbjct: 875  MIFGLAILLVYLVLAAQYESWTNPAAVILVVPLALLGTVIALALTATDNNIYTQIGIVLL 934

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            I  +  + +++ +  R+   L        D   ++        + TS A  + + P+   
Sbjct: 935  IALASKNAILIVEFARE---LRADGKDLLDAAVQAARMRFRPILMTSFAFIMGIYPLVRA 991

Query: 790  GG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             G   +   +    +  G++ +   ++       +       
Sbjct: 992  EGASAASRRALGTAVFGGMLASTFLAVLFVPVFYVVWQRLSE 1033


>gi|16763787|ref|NP_459402.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16418911|gb|AAL19361.1| preprotein translocase, IISP family, part of the channel
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. LT2]
          Length = 615

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 294/524 (56%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 104 NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLREKGI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS+ ++              + L    +  ++ + +  ++  
Sbjct: 164 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 213 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 273 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 333 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 392 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 452 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 511

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 512 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 571

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 572 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 615



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 440 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  I++           
Sbjct: 499 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  + 
Sbjct: 556 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 609


>gi|330872897|gb|EGH07046.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 303

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 95/286 (33%), Positives = 159/286 (55%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R+V TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTVATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  +++  +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAISALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|319957741|ref|YP_004169004.1| protein-export membrane protein secd [Nitratifractor salsuginis DSM
           16511]
 gi|319420145|gb|ADV47255.1| protein-export membrane protein SecD [Nitratifractor salsuginis DSM
           16511]
          Length = 522

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 166/540 (30%), Positives = 301/540 (55%), Gaps = 35/540 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   + V+++      G++ ++P+ +               +I+LGLDL+GG H++L V
Sbjct: 1   MKRLNYRVVIFIAALIFGVVFSIPSLIQSK---------EGKKITLGLDLQGGLHMLLGV 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +   L+  +  ++  ++   I +  +    +K+T    DS       + +   L+
Sbjct: 52  KSDEAIKSRLKSIAGTIKYIMEDNDIVIDDLAVEGDKVTFKVLDSDDIPKAKELLKKELE 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           GV+            V   +   ++ L+   + +    AI+Q+++ IR R+DQ G++E T
Sbjct: 112 GVS------------VLENQGTFTVTLTPKEVARTKKQAIDQAVDTIRNRLDQFGLAEPT 159

Query: 181 IQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G+ +IL+++PG +   D  R+R+L+   A +    V           +  +   +G
Sbjct: 160 VAKQGTDKILVEVPGIKTPADEQRIRELIARAAHLQMMAVDEDRAARVYSMSPAEAKKYG 219

Query: 230 VRFLRD--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              L D  +   +YL++    + G  L  A   F  + ++PV++   +  GA+ F + + 
Sbjct: 220 DVILPDVKNPKEKYLLKAIPILDGSMLTDAKVGF-DRNNQPVINFKLNGEGAKIFGDFSG 278

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            ++GK +A+VLD +V +APVI + I  G  QISGNFTI+ A  +A  LR+G+L   + ++
Sbjct: 279 KSVGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFTIDEANDIAIALRSGALLAPVYVM 338

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E+R+VG  +G+DSI +   A++ G VL+V+FM++ YG  GLVAD ++  N+ L LA+++L
Sbjct: 339 EKRSVGPSMGADSIRQSMIALILGFVLVVIFMVIYYGMAGLVADIALVGNLFLILAVMAL 398

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            GATLTLP +AGIVL +G+AVD+N+++NERIRE   +  S+  +++ G++ A++ I+D+N
Sbjct: 399 FGATLTLPGMAGIVLTVGMAVDANVIINERIRELLHEGASIPKAIEEGYANAFTAIWDAN 458

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           +T LI+ VVL+ +G G ++GFA+TM + IL SM TAI     +    +       ++   
Sbjct: 459 VTTLISAVVLYAYGTGPIKGFALTMSIGILASMLTAILGTHGIYQAFMDKITRDKLNFWF 518



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/203 (18%), Positives = 85/203 (41%), Gaps = 4/203 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   ++    +     VGP +  + IR+ ++ +I+  + ++I++ I +
Sbjct: 315 TIDEANDIAIALRSGALLAPVYVMEKRSVGPSMGADSIRQSMIALILGFVLVVIFMVIYY 374

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L A   L+ ++   L   ALFG    L  +A ++  +G +V+  V++ +R+R+ +
Sbjct: 375 GM-AGLVADIALVGNLFLILAVMALFGATLTLPGMAGIVLTVGMAVDANVIINERIRELL 433

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                  S    I++            ++   IS + +  +G   I  FA+ M+ GI+ +
Sbjct: 434 HE---GASIPKAIEEGYANAFTAIWDANVTTLISAVVLYAYGTGPIKGFALTMSIGILAS 490

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             ++I     I     D   ++ 
Sbjct: 491 MLTAILGTHGIYQAFMDKITRDK 513


>gi|260596778|ref|YP_003209349.1| preprotein translocase subunit SecD [Cronobacter turicensis z3032]
 gi|260215955|emb|CBA28573.1| Protein-export membrane protein secD [Cronobacter turicensis z3032]
          Length = 615

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 172/538 (31%), Positives = 288/538 (53%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L     +          + LGLDLRGG H ++EVD D  ++   + 
Sbjct: 99  FVVALNLAPATPRWLTAISAE---------PMKLGLDLRGGVHFLMEVDMDTALSKLQEQ 149

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+++G+   ++R+  N  +T+ F DS  ++  A  +T   +           
Sbjct: 150 NMDSLRSDLREKGLSWTNVRKADNYGVTIQFRDSDIRDAAASYLTARHR----------- 198

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             ++ +  +  +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI++
Sbjct: 199 DMVVSSEGDNSLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 258

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  N  +     G            +G   ++  +
Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNSNVDRTAAAAGRIPGDSEVKMTREGQPVVLYKR 318

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV---- 302
           V ++G H+  +T+  D       V+IS D  G       T+DNI KP+A +         
Sbjct: 319 VILTGDHITDSTSGVDQYNMPQ-VNISLDSSGGNIMSNFTKDNIHKPMATLFVEYKDSGK 377

Query: 303 --------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                         +      QA       I+G      A  L+ +LRAG+L   + IVE
Sbjct: 378 KDANGRSILMKQEEVINVATIQARLGQNFVITGIDNPNEARQLSLLLRAGALIAPIQIVE 437

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A +AGL + +LFMI+ Y K+GL+A  ++  N++L + ++SLL
Sbjct: 438 ERTIGPTLGMQNITQGLEACLAGLAVSILFMILFYKKFGLIATTALLANLVLIVGIMSLL 497

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE    +SV  ++D G+  A+S+IFD+N
Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDAN 557

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +T LI  ++L+  G GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 558 VTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 615



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  S+ +      N    +  L +     G           +  +   
Sbjct: 369 FVEYKDSGKKDANGRSILMKQEEVINVATIQARLGQNFVITGIDNPNEARQLSLLLRAGA 428

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +      ++++ + +K  F L A T L+ ++
Sbjct: 429 LIAPIQIVEERTIGPTLGMQNITQGLEACLAGLAVSILFMILFYK-KFGLIATTALLANL 487

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  ID+
Sbjct: 488 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDE 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +
Sbjct: 545 GYRGAFSSIFDANVTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLL 604

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 605 YGGKRINK 612


>gi|190150394|ref|YP_001968919.1| preprotein translocase subunit SecD [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|189915525|gb|ACE61777.1| protein-export membrane protein SecD [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
          Length = 615

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 104 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +      + +            + +  EIS 
Sbjct: 164 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S++ +      AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 213 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 273 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 331

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 332 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 392 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 452 KGMEAGMYGLILTIAFCLIYYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVL 511

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 512 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 571

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 572 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 614



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A   L  ++  T+G  +L G
Sbjct: 440 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAAAALTANMVLTIGLMSLIG 498

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 499 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 555

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 556 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 613


>gi|165976490|ref|YP_001652083.1| preprotein translocase subunit SecD [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|307263738|ref|ZP_07545344.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|165876591|gb|ABY69639.1| protein-export membrane protein SecD [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|306870859|gb|EFN02597.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 604

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 93  NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +      + +            + +  EIS 
Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S++ +      AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 202 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A   L  ++  T+G  +L G
Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAAAALTANMVLTIGLMSLIG 487

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602


>gi|330950807|gb|EGH51067.1| preprotein translocase subunit SecD [Pseudomonas syringae Cit 7]
          Length = 622

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 164/521 (31%), Positives = 273/521 (52%), Gaps = 40/521 (7%)

Query: 35  FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
            P+ +     + + LGLDL GG H +LEVD D  ++  L++Y  E++S L+KE +   S+
Sbjct: 112 TPTWLRHLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSL 171

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
            Q+ N I L F D   +E     V             +     ++        + L+   
Sbjct: 172 PQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTPAK 223

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++LG TA 
Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F      +        +   R+       VE  + I+G  +  A A+FD    +P V+
Sbjct: 284 LEFRLGAGPDD-SKGTTEMFEFREGGRPAAGVERGLIITGDQVTDAKASFDEHG-RPQVN 341

Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304
           I+ D  G       TR N+G+ +                               + + + 
Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVDGVEKDVPVQTFKEDKKII 401

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D+I KG
Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             A + G++ + LF++ +Y  +GL+A  ++ LN+++ LAL+SLLGATLTLP IAGIVL +
Sbjct: 462 IDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTM 521

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+ VD+N+L+  RIREE     +V  +++ GF RAY+ I D+N+T L+   +LF  G G 
Sbjct: 522 GMGVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 92/250 (36%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         D    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G  V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMGVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 44.3 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|302879494|ref|YP_003848058.1| protein-export membrane protein SecF [Gallionella capsiferriformans
           ES-2]
 gi|302582283|gb|ADL56294.1| protein-export membrane protein SecF [Gallionella capsiferriformans
           ES-2]
          Length = 310

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 96/302 (31%), Positives = 165/302 (54%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM    +   IS++  + ++  L T GLN+G+DF GG  + V   +P D
Sbjct: 1   MELFKIKRDIPFMSYGRYTTAISLVTFLFAVLFLVTRGLNFGVDFTGGTVMEVHYAQPAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  L  +++ D   QNF    + L+++  +   +VA  ++ E V   +        
Sbjct: 61  LVKVREQLAGVKLPDALVQNFGSSHDVLIQIPLK--QNVAGAKLSEQVMGALHSQDASVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ R+LI  G + +++ ++ ++ Y+W+RF+W F L AI   + D+   LGF
Sbjct: 119 MRRVEFVGPQVGRDLIENGAMALLLVSLGIVGYLWVRFEWKFGLSAIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VVV+DR+R+N +         ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVVFDRIRENFRKM-RRAEVTEIIDNAITRTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T     + V  M   GG  +  FA+ +  GI+ +  SS+ +A+PIL+++   R   
Sbjct: 238 RTIITHGCTQMMVGAMLFLGGETLHYFAMALTIGILFSIYSSVLVASPILMWLGVSREDF 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|167895806|ref|ZP_02483208.1| preprotein translocase subunit SecD [Burkholderia pseudomallei
           7894]
          Length = 627

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 87/205 (42%), Gaps = 4/205 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAK 829
           I+ +  S++F +  ++   Y  R K
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKK 593


>gi|294635294|ref|ZP_06713793.1| protein-export membrane protein SecD [Edwardsiella tarda ATCC
           23685]
 gi|291091328|gb|EFE23889.1| protein-export membrane protein SecD [Edwardsiella tarda ATCC
           23685]
          Length = 607

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 163/527 (30%), Positives = 282/527 (53%), Gaps = 43/527 (8%)

Query: 30  SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  M       + LGLDLRGG H +++VD D  ++   +   D LRS L+++GI
Sbjct: 93  NLAPATPKWMEMIGAEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLREKGI 152

Query: 87  GVFSMR----QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
              ++R         + + F DS  +    D ++   +             +     +  
Sbjct: 153 AYSTIRKLPDPSSGGVEIHFRDSAARNQANDYLSSRHR-----------DLVFSNVGDTT 201

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           +  V+S + + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R 
Sbjct: 202 LKAVMSDDRLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARA 261

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGA 257
           +++LG TA + F  V  N   +    G            DG   ++  +V ++G H+  +
Sbjct: 262 KEILGATATLEFRLVNGNVDAQAAASGRVPGDSEVKYTRDGRPVVLYKRVILTGDHITDS 321

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP----------- 306
           T++   + ++P V+IS D  G       T+DNIGKP+A +      +             
Sbjct: 322 TSS-QDEFNRPQVNISLDSAGGSTMSNFTKDNIGKPMATLFVEYKDSGKKDANGKPILVK 380

Query: 307 -------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  
Sbjct: 381 QEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQ 440

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIA 418
           +I +G  A + GLV  ++FM+V Y K+GL+A  ++  N+++ + ++SLL  ATLT+P IA
Sbjct: 441 NIQQGLEACLWGLVASIIFMVVFYKKFGLIATTALLANLVMIVGVMSLLPGATLTMPGIA 500

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GIVL + +AVD+N+L+NERI+EE R  ++V  ++  G+  A+S+I D+N+T LI  V+L+
Sbjct: 501 GIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILY 560

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             G G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 561 AVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 607



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +A +I++ + +K  F L A T L+ ++   +G  +L  
Sbjct: 432 TIGPTLGMQNIQQGLEACLWGLVASIIFMVVFYK-KFGLIATTALLANLVMIVGVMSLLP 490

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ ++      + +  I +         + 
Sbjct: 491 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHEGYKGAFSSIID 547

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI  A G+  +  ++I     I+  +Y  +  N 
Sbjct: 548 ANVTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINK 604


>gi|170703131|ref|ZP_02893947.1| protein-export membrane protein SecF [Burkholderia ambifaria
           IOP40-10]
 gi|170131964|gb|EDT00476.1| protein-export membrane protein SecF [Burkholderia ambifaria
           IOP40-10]
          Length = 316

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   +N L+RLQ + G + AQ    + V   +    P  +
Sbjct: 61  LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMTALKAQSPDVS 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+ IRF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA+L ++GYSVN+ VV++DR+R+  +     +S  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERRMSVSEVINHAITTTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|162329625|ref|YP_001053764.2| preprotein translocase subunit SecD [Actinobacillus
           pleuropneumoniae L20]
          Length = 615

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 104 NLAPATPAWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +      + +            + +  EIS 
Sbjct: 164 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S++ +      AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 213 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 273 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 331

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 332 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 392 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 452 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 511

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 512 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 571

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 572 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 614



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A T L  ++  T+G  +L G
Sbjct: 440 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 498

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 499 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 555

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 556 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 613


>gi|120598345|ref|YP_962919.1| preprotein translocase subunit SecF [Shewanella sp. W3-18-1]
 gi|146293577|ref|YP_001184001.1| preprotein translocase subunit SecF [Shewanella putrefaciens CN-32]
 gi|120558438|gb|ABM24365.1| protein translocase subunit secF [Shewanella sp. W3-18-1]
 gi|145565267|gb|ABP76202.1| protein translocase subunit secF [Shewanella putrefaciens CN-32]
 gi|319426876|gb|ADV54950.1| protein-export membrane protein SecF [Shewanella putrefaciens 200]
          Length = 315

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 91/291 (31%), Positives = 163/291 (56%), Gaps = 3/291 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + F+R       +S +  + S+  L  +G+N+G+DF GG  + +   +PVDL+ +R  
Sbjct: 9   RTVNFLRHALPISILSAVLVLGSLVSLAINGINWGLDFTGGTVVEMEFTQPVDLNTLRVQ 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +        QNF   ++ LVRL  + G        ++ V     ++ P    +  E V
Sbjct: 69  LTTPDTEGAIVQNFGSSRDVLVRLSVKEGVKSDVQ--VKSVMDAAQKVDPQVQQKRVEFV 126

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++ +EL  +G + V+++ I ++IY+  RF+W  A G++  L  D+  TLG F+LF +E
Sbjct: 127 GPQVGKELAEQGGLAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSLFQLE 186

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +A +LT++GYS+ND +VV+DR+R+N      S    D+++ SI +T+ R++ T+ 
Sbjct: 187 FDLTVLAGLLTVVGYSLNDTIVVFDRIRENFLKLRKSEP-EDIVNISITQTMSRTIITTG 245

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 246 TTLVVVVALFLKGGTMIHGFATALLMGIFVGTYSSIYVASFLAIKLGISRE 296


>gi|330874666|gb|EGH08815.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 303

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 93/286 (32%), Positives = 159/286 (55%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AA L +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAGLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  ++++ +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIVALWAFGGDSLEGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|307822492|ref|ZP_07652723.1| protein-export membrane protein SecF [Methylobacter tundripaludum
           SV96]
 gi|307736096|gb|EFO06942.1| protein-export membrane protein SecF [Methylobacter tundripaludum
           SV96]
          Length = 308

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 105/290 (36%), Positives = 170/290 (58%), Gaps = 2/290 (0%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I F+  R   +  S + +I SI  +  HG   GIDF GG  + V   +P DL+V+
Sbjct: 1   MFKKDINFIGNRNIALMFSAVLTIFSIVAIAVHGFQMGIDFTGGTLIEVGYQKPADLTVL 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L++    D + QNF   K+ L+RL+ Q G S  +    ++++         ++++  
Sbjct: 61  RNTLDAEGFSDATVQNFGTTKDVLIRLKPQEGVSSVELS-SKVLEAINKNAAEPASVRRV 119

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E VGP++  +L   G + ++ S I +LIYI  RF+W F++GAI   + D+  TLG F++ 
Sbjct: 120 EFVGPQVGDDLAEDGFLALLYSTICILIYIAWRFEWKFSVGAIIATLHDVIVTLGLFSIL 179

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G+EF+LT +AAVL LIGYS+ND +VVYDR+R+N +      S  ++++ S+N TL R++ 
Sbjct: 180 GLEFDLTVLAAVLALIGYSLNDTIVVYDRIRENFRALRNK-STEEIMNISVNVTLSRTIM 238

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           TS+   + ++ +   GG VI +FAI + FG+     SSIFIA+P+ L + 
Sbjct: 239 TSLTVLLVLVSLFFLGGEVIHNFAIVLLFGVFFGTYSSIFIASPVALLLG 288


>gi|308070369|ref|YP_003871974.1| protein-export membrane protein secF [Paenibacillus polymyxa E681]
 gi|305859648|gb|ADM71436.1| Protein-export membrane protein secF [Paenibacillus polymyxa E681]
          Length = 305

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 81/297 (27%), Positives = 155/297 (52%), Gaps = 8/297 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +     +++++   W    SI+ ++  I  L   GLNYG+DF+ G  + V   + V    
Sbjct: 1   MRFNWNLKYIKMSKWFYTFSIIITLLGILSLSIFGLNYGVDFRSGSNVDVNLTKVVTQEQ 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +++ L+   IG         E+  +   Q          + +   K    + +       
Sbjct: 61  IQTLLDKQGIGKEVDYTPGKERFGIRFSQV------LTDQQVNDFKISFNKQLDPKASFE 114

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              V  ++++EL R  I  ++++ +A+ +YI IRF+W FA+ AI +L+ D    +  F++
Sbjct: 115 VNTVDTEMAQELERNAIWAILLACVAIAVYISIRFEWRFAIAAIVSLLHDAFLVISIFSI 174

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGR 771
           F +E +LT + A+LT++G+S+ND VV++DR+R+N++     +      ++D SI +T+ R
Sbjct: 175 FRLEVDLTFITAILTIVGFSINDTVVIFDRIRENLRFAKKKSRDDLEQVVDHSIAQTMTR 234

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S+ T    FI+ L + ++GG  I  F++ M  G++  A SSIFIA+P+ + +   + 
Sbjct: 235 SLATVFTVFIASLCLFIFGGESIRMFSLAMVIGLLFGAYSSIFIASPLWVALKGKQK 291


>gi|56552792|ref|YP_163631.1| protein-export membrane protein SecF [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241762470|ref|ZP_04760547.1| protein-export membrane protein SecF [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|260753482|ref|YP_003226375.1| protein-export membrane protein SecF [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
 gi|56544366|gb|AAV90520.1| protein-export membrane protein SecF [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|241372972|gb|EER62639.1| protein-export membrane protein SecF [Zymomonas mobilis subsp.
           mobilis ATCC 10988]
 gi|258552845|gb|ACV75791.1| protein-export membrane protein SecF [Zymomonas mobilis subsp.
           mobilis NCIMB 11163]
          Length = 305

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 105/301 (34%), Positives = 183/301 (60%), Gaps = 2/301 (0%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            ++PD   I+F+R R     ++ + ++ S+ LL   GLN G+DF GG+ +     +PV+L
Sbjct: 5   RIVPDNTNIRFVRLRGIAFLLTFILTLASVALLGVKGLNLGVDFVGGLMIEAHFEKPVEL 64

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R ++  L IG+ S Q      N  +RL   PGD  A  +V+++V+  +++  P    
Sbjct: 65  DTLRRDINRLNIGEASLQQIGTNNNVSIRLPLPPGDESASQKVVKIVQTSLSQQFPNVHF 124

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  + V  K+S EL+R GI+ V+++   ++I+ W+RF+W FA+    ++  D+   LGFF
Sbjct: 125 ERVDTVSGKVSGELMRSGIIAVLLAIAGIVIFTWLRFEWQFAVSTFVSVAHDVLVILGFF 184

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           AL  +EF+L  VAA+LT+ GYS+NDK+V+ DR+R+N++ +   +    LID S+NETL R
Sbjct: 185 ALTRMEFDLNIVAAILTIAGYSINDKIVIDDRIRENLRKFRK-MDLGSLIDLSVNETLPR 243

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +V TS +  + +  + ++GG  + SF   M  G++V   SSI++++ +L+F+ + R K A
Sbjct: 244 TVMTSFSMILVLGILLIFGGDAVRSFTAAMLLGVIVGTYSSIYVSSSLLIFL-NLRPKTA 302

Query: 832 R 832
           +
Sbjct: 303 K 303


>gi|114566948|ref|YP_754102.1| preprotein translocase subunit SecF [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337883|gb|ABI68731.1| protein translocase subunit secF [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 280

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 147/287 (51%), Gaps = 8/287 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           +QF++ R +   +S +     +  +F  G   GIDF+GG  L    +  V  + VRS LE
Sbjct: 1   MQFIQNRKYFFILSAILITLGLISIFVQGFKLGIDFEGGSLLRFRMDAAVSSAEVRSTLE 60

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            L+  D S     G        ++            E V K            + E VG 
Sbjct: 61  ELKFIDQSSIQKSGN-------EFLIRTRELNQEQTEQVNKAFAAKFKNVEYLSAESVGA 113

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I  EL R  ++ V+I+ + ML+YI  RF+W F + A+  L  ++   LG F++F  E +
Sbjct: 114 TIGNELTRNAVLSVLIAMLLMLVYISFRFEWTFGVAAVVALFHNVLIVLGIFSIFQWELD 173

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
              +AA+LT++GYS+ND +V++DR+R+N++L  T      L++KSI +T+ RSV T +  
Sbjct: 174 GAFIAAILTIVGYSINDTIVIFDRIRENLRL-KTRDDLTTLLNKSIMQTMNRSVNTVLTV 232

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              ++ + ++GGS I  F + M  G VV A SSIFIA+P+   I   
Sbjct: 233 LFPLVTLYLFGGSTIKIFVLTMLIGFVVGAYSSIFIASPLYYDIKQK 279


>gi|46143549|ref|ZP_00134981.2| COG0342: Preprotein translocase subunit SecD [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126097331|gb|ABN74159.1| protein-export membrane protein SecD [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 604

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 93  NLAPATPAWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +      + +            + +  EIS 
Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S++ +      AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 202 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A T L  ++  T+G  +L G
Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 487

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602


>gi|308185880|ref|YP_003930011.1| Protein-export membrane protein secF [Pantoea vagans C9-1]
 gi|308056390|gb|ADO08562.1| Protein-export membrane protein secF [Pantoea vagans C9-1]
          Length = 322

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 161/301 (53%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L      + FMR       IS L  + +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YNIEQLNHGRKVVDFMRWDKLAFIISGLLIVAAIAIVGVRGFNWGLDFTGGTVIEIALEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +RS L      +   QNF   ++ +VR+    G         ++V         
Sbjct: 65  PADLDTLRSELVKAGFDEPLVQNFGSSRDVMVRMAPVTG-PAGTELGNKVVSVINQTTQQ 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+LIYI  RF+W  ALG +  L  D+  T
Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGAMALLSALIAILIYIGFRFEWRLALGTVLALAHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALF IE +LT VA+++++IGYS+NDK+VV DR+R+N +      S+ D+ + S+ +
Sbjct: 184 CGLLALFRIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS+     +L + ++GG+++  F++ M  G+ +   SSI++++ + L +   R
Sbjct: 243 TLSRTLITSLTTLAMILILFIFGGALLKGFSLTMLIGVTIGTISSIYVSSALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|303253357|ref|ZP_07339506.1| preprotein translocase subunit SecD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302648039|gb|EFL78246.1| preprotein translocase subunit SecD [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 615

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 104 NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +      + +            + +  EIS 
Sbjct: 164 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S++ +      AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 213 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 273 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 331

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 332 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 392 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 452 KGMEAGMYGLILTIAFCLIYYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVL 511

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 512 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTVLTSLVLYAVGT 571

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 572 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 614



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A   L  ++  T+G  +L G
Sbjct: 440 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAAAALTANMVLTIGLMSLIG 498

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 499 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 555

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 556 NLTTVLTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 613


>gi|307249163|ref|ZP_07531168.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306854333|gb|EFM86531.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 604

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 280/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 93  NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +      + +            + +  EIS 
Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIRRVHTALEA-----------ASISPTEISF 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S++ +      AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 202 SPSESGLATSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAAAALTANMVLTIGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTVLTSLVLYAVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 83/178 (46%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A   L  ++  T+G  +L G
Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAAAALTANMVLTIGLMSLIG 487

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 545 NLTTVLTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602


>gi|118444068|ref|YP_877914.1| preprotein translocase subunit SecF [Clostridium novyi NT]
 gi|118134524|gb|ABK61568.1| protein-export membrane protein SecF [Clostridium novyi NT]
          Length = 289

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 141/286 (49%), Gaps = 5/286 (1%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS+   I  +  L   GLNYGIDFKGG  + +   +  +        + ++  
Sbjct: 7   KTKIWFAISLTVIILGMVCLGVKGLNYGIDFKGGTVVTIEMGKNFNQKTKEEADKIIKKY 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           D +  ++   +  L         +       E+  K   +    + + +   VGP +  E
Sbjct: 67  DPAASSYIANETQLEIKSNNLESNSINKMFGELKTKYKLK---DTALVSQNNVGPSVGNE 123

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L +K    ++I+ IAMLIYI  RF+  F + AI  L+ DI  TLG +A   I  N   +A
Sbjct: 124 LKKKAAGALVIATIAMLIYIGFRFEIKFGIAAILALLHDILITLGVYAFTQIPINTPFIA 183

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            +LT++GYS+ND +V++DR+R+N +      +  ++++ SI +T+ RS+ T +    +++
Sbjct: 184 GMLTIVGYSINDTIVIFDRIRENRRKL-RGRNIIEIVNVSITQTMSRSINTVLTTLFTIV 242

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            + ++    +  F  P+  GIV  A SSIFIA+PI + +  +  K 
Sbjct: 243 SVYIF-VPSVRDFTFPLIIGIVSGAYSSIFIASPIWVLLRKFGNKK 287


>gi|312911440|dbj|BAJ35414.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
          Length = 604

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 166/524 (31%), Positives = 294/524 (56%), Gaps = 40/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS+ ++              + L    +  ++ + +  ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L + +AVD+N+L+NERI+EE    ++V  +++ G++ A+S+IFD+NIT LI  ++L+  G
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVIILYAVG 560

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 561 TGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI 604



 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  I++           
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINEGYAGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  + 
Sbjct: 545 ANITTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKR 598


>gi|304395472|ref|ZP_07377355.1| protein-export membrane protein SecF [Pantoea sp. aB]
 gi|304356766|gb|EFM21130.1| protein-export membrane protein SecF [Pantoea sp. aB]
          Length = 322

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 162/301 (53%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L      + FMR       IS L  + +I ++   G N+G+DF GG  + +   +
Sbjct: 5   YNIEQLNHGRKVVDFMRWDKLAFIISGLLILAAIAIVGVRGFNWGLDFTGGTVIEIALEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL V+R +L      +   QNF   ++ +VR+    G         ++V         
Sbjct: 65  PADLEVLRGDLVKAGFDEPLVQNFGSSRDVMVRMAPVTG-PAGTELGNKVVSVINQTTQQ 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+LIYI  RF+W  ALG +  L  D+  T
Sbjct: 124 NATVKRIEFVGPSVGSDLAQAGAMALLSALIAILIYIGFRFEWRLALGTVLALAHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALF IE +LT VA+++++IGYS+NDK+VV DR+R+N +      S+ D+ + S+ +
Sbjct: 184 CGLLALFRIEIDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS+     +L + V+GG+++  F++ M  G+ +   SSI++++ + L +   R
Sbjct: 243 TLSRTLITSLTTLAMILILFVFGGALLKGFSLTMLIGVTIGTISSIYVSSALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|224373500|ref|YP_002607872.1| protein-export membrane protein SecD [Nautilia profundicola AmH]
 gi|223588447|gb|ACM92183.1| protein-export membrane protein SecD [Nautilia profundicola AmH]
          Length = 518

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 164/538 (30%), Positives = 293/538 (54%), Gaps = 30/538 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   + ++++ +    G+   +P+F+ +             +I+LGLDL+GG +LVL V
Sbjct: 1   MKKLNYRLVIFILAALFGIAFTIPSFINKEP-----------KINLGLDLQGGMYLVLGV 49

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ V   ++  +  ++    K+ + + +++   N +T    D      +  ++     
Sbjct: 50  KGDEAVKSKIKTIASTIKYITDKKELFIDNLKTKDNSVTFELIDKDDAAKLDKELK---- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                +               E  I L+   I +    A+ Q+++ IR R+D  G++E T
Sbjct: 106 -----ILKGVNIQKTPKNGSIEYKITLTPQEIIKTKDDALNQAIQTIRSRLDAFGLAEPT 160

Query: 181 IQRLGSHRILIQLPGEQDPSR---LRQLLGTTAKMSFHKVLPNNSKKGFMFGVR------ 231
           + + G  +IL++LPG + P     ++QL+ T+A +  + V   +         +      
Sbjct: 161 VTKQGKDKILVELPGIKTPKEQHSVQQLISTSAHLELYAVDEEHRALTPKDAEKYGDILL 220

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +D+   +YL++    + G  +  AT  F  KT++P +  + +  GA+ F + T  N+G
Sbjct: 221 PSKDNPDRKYLLKTPPVLDGSMITDATVGFTQKTNQPAIFFTLNSQGAQIFGDFTGKNVG 280

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K LA+V+D +V +AP I + I  G  QI+   + E A +LA  LR+GSLP  + ++E+R+
Sbjct: 281 KRLAIVVDNKVYSAPTIQERIGGGSGQIT-VGSPEEAHVLAIALRSGSLPAPVMLLEKRS 339

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VGA LG+DSI +   A++ G +++V+FM   YG  G+VAD ++ +N+ L +A+++L GAT
Sbjct: 340 VGASLGADSIRQSLIALITGFIVVVVFMAWYYGTAGIVADIALIVNLFLIIAIMALFGAT 399

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP +AGIVL +G+AVD+N+++NERIRE  R+ +S+  +++ G+  A S I D+NIT L
Sbjct: 400 LTLPGMAGIVLTVGMAVDANVIINERIRELIREGKSIKVAIEGGYKNAMSAILDANITTL 459

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           IA + LF +G G ++GFAITM + I+ SM TAI     +  +++   K  +     + 
Sbjct: 460 IAAIALFAYGTGTIKGFAITMAIGIMASMLTAILGTHGIWEYLLASGKKITPKSFGMK 517



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 81/174 (46%), Gaps = 4/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  +  + IR+ ++ +I   I +++++   +     + A   LI+++   +   ALFG
Sbjct: 339 SVGASLGADSIRQSLIALITGFIVVVVFMAWYYG-TAGIVADIALIVNLFLIIAIMALFG 397

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++ +R+R+ ++      S +  I+      +   +  
Sbjct: 398 ATLTLPGMAGIVLTVGMAVDANVIINERIRELIRE---GKSIKVAIEGGYKNAMSAILDA 454

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++   I+ + +  +G   I  FAI MA GI+ +  ++I     I  ++     K
Sbjct: 455 NITTLIAAIALFAYGTGTIKGFAITMAIGIMASMLTAILGTHGIWEYLLASGKK 508


>gi|302562156|ref|ZP_07314498.1| SecD/SecF/SecDF export membrane protein [Streptomyces griseoflavus
           Tu4000]
 gi|302479774|gb|EFL42867.1| SecD/SecF/SecDF export membrane protein [Streptomyces griseoflavus
           Tu4000]
          Length = 366

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 87/356 (24%), Positives = 159/356 (44%), Gaps = 12/356 (3%)

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP----LSRF 531
           +LF    G V+GF +T+G+ ++ SM +A+ I R +  F +  + +           + R 
Sbjct: 1   MLFVLASGPVKGFGVTLGIGVIASMISALVITRVLAEFAVARRWVHRRPRTTGLASIGRV 60

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                    Q MR     + +S +  + +   +   GLN+G++F GG  +    +  VD 
Sbjct: 61  RTYLTRRDPQLMRRPRRWLAVSAVVLVVAGAGIVVRGLNFGVEFTGGRLIEYSTSDAVDP 120

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
              R  L          Q+           +               V   +  +   +  
Sbjct: 121 DRAREALADAGFPQAVVQSSGEN-------RLTVRTEELTNAQAVEVADAVAGVGGGAEK 173

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              E++GP +  EL R  ++ + ++  A L+Y+  RF+W F  GA++ L  D+    G F
Sbjct: 174 VRDELIGPSLGDELRRNALIALGLALGAQLLYLAFRFRWMFGAGAVSALAHDVVILTGIF 233

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A  G   +   +AA+LT+IGYSVND VVV+DR+R+  +          + +++I +T+ R
Sbjct: 234 AWLGKPIDGVFLAALLTVIGYSVNDSVVVFDRIRELWRKDGK-APLAQVTNRAILQTVPR 292

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +V T +     +  +AV GG  +  FA+ +  G++V   SS+  A+P+ + +    
Sbjct: 293 TVNTGIGVIFILAALAVLGGDSLTDFALALLIGMLVGTYSSVLTASPLAVELDARS 348



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 8/47 (17%), Positives = 19/47 (40%)

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + V     +  F + +  G++ +  S++ I   +  F    R  + R
Sbjct: 2   LFVLASGPVKGFGVTLGIGVIASMISALVITRVLAEFAVARRWVHRR 48


>gi|238026272|ref|YP_002910503.1| preprotein translocase subunit SecD [Burkholderia glumae BGR1]
 gi|237875466|gb|ACR27799.1| Protein export protein SecD [Burkholderia glumae BGR1]
          Length = 677

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 161/516 (31%), Positives = 264/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +N  L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALNKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+  GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 160 ATDARTQLRDRGIRDGGVNRVDQSVVANFADQATAEQARSFLAGSITELQWATQPG---- 215

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  IQ+ G+ RI+++L
Sbjct: 216 ----GGGYQVVGTFTPAVRQAVEEAALKQNLTTLHNRVNELGVSEPIIQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L+  +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPVNLHPNPNDPVPPGDELFTQGNQVPVLLRKQVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHN-RPSVNIRLDSNGGRAVRTVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FM+  Y  +G+V+   + +N++L +A LS++ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFVAIAVFMVAYYLLFGVVSVIGLSVNLLLLVAALSVMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R   S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRGGASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   + IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCIGILTSMFSAVFFSRGLVNLWYGGRKKLK 606



 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 89/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G+  VI   +A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVHSVIWGFVAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   ++      L  +AA+   +G +++  V++ +R+
Sbjct: 464 VAYY-LLFGVVSVIGLSVNLLLLVAALSVMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRG---GASPQIAIQQGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCIG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   I
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSI 608



 Score = 44.3 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 29/123 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IGLL  LPNF  ++                           ++V 
Sbjct: 3   RYPIWKYVVMVVALAIGLLYTLPNFYGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                         ++ + LK   I    +    +     I +   D+  +  + D +  
Sbjct: 38  SGKATVKIDSSTLAQVEAALKAASITPDDITFDNSANNANIRVRLKDTDTQLRVKDLLQK 97

Query: 118 FLQ 120
            L 
Sbjct: 98  ALN 100


>gi|121596288|ref|YP_988184.1| preprotein translocase subunit SecF [Acidovorax sp. JS42]
 gi|120608368|gb|ABM44108.1| protein translocase subunit secF [Acidovorax sp. JS42]
          Length = 317

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 159/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S +    ++  L T GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIKKDIPFMKYALVLNAVSFITFALAVFFLVTRGLHLSVEFTGGTVMEVAYTQTAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR  +  L   D+  QNF   ++ ++RL  Q G + AQ    E V   +    P  T
Sbjct: 61  IGKVRDTVAGLGYADVVVQNFGTSRDVMIRLPVQKGVTSAQQS--EQVLSALKAQDPEVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL+  G++ + +  + ++IY+  RF+W F + A+   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGEELVHSGLMALGMVVLGIVIYLAFRFEWKFGVAAVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +A VL ++GYSVN+ VV++DR+R+  + +   ++  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LNTHEVIDHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +    VL M  +GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|289677972|ref|ZP_06498862.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           syringae FF5]
          Length = 609

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 166/539 (30%), Positives = 277/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L +              + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 90  VVALNLARTTPTWLRKLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 140

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F D   +E     V             +    
Sbjct: 141 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 199

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 200 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 252

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 253 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 311

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 312 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 370

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 371 GVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 430

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + +F++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 431 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 490

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 491 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 550

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 551 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 609



 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         D    +    ++ L       G +         +  +
Sbjct: 361 TTTYTKQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 420

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + I+I   +++ F L A   L 
Sbjct: 421 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 479

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 480 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 536

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 537 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 596

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 597 LIYGGRDFKK 606


>gi|226941676|ref|YP_002796750.1| preprotein translocase subunit SecD [Laribacter hongkongensis
           HLHK9]
 gi|226716603|gb|ACO75741.1| SecD [Laribacter hongkongensis HLHK9]
          Length = 605

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 175/522 (33%), Positives = 279/522 (53%), Gaps = 33/522 (6%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL + P +L                + LGLDLRGG H +LEVD    V+  L+ Y
Sbjct: 100 IVALNLLSSSPAWLASIKAH---------PMFLGLDLRGGVHFLLEVDMKAAVDKTLERY 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++R  LK + I    +R+  + + +   D    + I D +         +L       
Sbjct: 151 AGDIRRELKAKKIRYGQIRRTGDSLEIGARDEATLKAIEDVI-------ARQLP---NLT 200

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           L        +   LS+  I +V   A+ Q++  +  R++++G++E  IQ+ G++RI++QL
Sbjct: 201 LRADDNTGRLIASLSEPEIRKVQEDAVRQNITTLHNRVNELGVAEPVIQQSGANRIVVQL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNS---------KKGFMFGVRFLRDSDGNQYLVE 244
           PG QD ++ + +LG TA +    V  ++                 ++ +        LV+
Sbjct: 261 PGVQDTAKAKDILGRTATLEVRMVEDDSQKLSDAIAGVTPAGYELMQEMTSRGPQPILVK 320

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR--- 301
            +VE++G ++N A   FD       V I+ D  G+  F +VT +NIG+ +A++L  +   
Sbjct: 321 KEVELTGDNINDAQPGFDENGTPA-VHINLDSTGSSIFRQVTAENIGRRMAMILVEKGKG 379

Query: 302 -VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            V+TAPVI   I  G+ QISG+     A  +A +LRAGSL   +NI+EER VG  LG+D+
Sbjct: 380 EVVTAPVIRSEIGGGRVQISGSMNAAEANDVALLLRAGSLAAPMNIIEERTVGPSLGADN 439

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  + V G + I +FM+  Y  +G ++  S+  NV+  +ALLS+L ATLTLP IA I
Sbjct: 440 IRMGFNSTVYGFLAIAVFMVFYYRVFGTISTLSLGANVMFLIALLSMLQATLTLPGIAAI 499

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+A+D+N+L+NER+REE R       ++  G+  A+ TI DSNIT LIA + L  F
Sbjct: 500 ALTLGMAIDANVLINERVREELRNGMPPQAAIRAGYDHAWHTILDSNITTLIAGLALLIF 559

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G G VRGFA+   L IL SMF+A+ + R ++  +   ++  +
Sbjct: 560 GSGPVRGFAVVHCLGILTSMFSAVMVSRGLVNLVYGSRRRLT 601



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 86/208 (41%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G   A       +  +   +     I     VGP +  + IR G    +   +A+ 
Sbjct: 396 VQISGSMNAAEANDVALLLRAGSLAAPMNIIEERTVGPSLGADNIRMGFNSTVYGFLAIA 455

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++   ++  F   +  +L  ++   +   ++      L  +AA+   +G +++  V++ 
Sbjct: 456 VFMVFYYRV-FGTISTLSLGANVMFLIALLSMLQATLTLPGIAAIALTLGMAIDANVLIN 514

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I    +      + +++   I+ L + ++G   +  FA+  
Sbjct: 515 ERVREELR---NGMPPQAAIRAGYDHAWHTILDSNITTLIAGLALLIFGSGPVRGFAVVH 571

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  S++ ++  ++  +Y  R +
Sbjct: 572 CLGILTSMFSAVMVSRGLVNLVYGSRRR 599


>gi|167837807|ref|ZP_02464690.1| preprotein translocase subunit SecF [Burkholderia thailandensis
           MSMB43]
          Length = 316

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 158/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VRS L +L   D   QNF   +N L+RL  + G + AQ    + V   +        
Sbjct: 61  LEPVRSALGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMAALKAQNADVA 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++ +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|114331422|ref|YP_747644.1| preprotein translocase subunit SecD [Nitrosomonas eutropha C91]
 gi|114308436|gb|ABI59679.1| protein-export membrane protein SecD [Nitrosomonas eutropha C91]
          Length = 615

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 159/519 (30%), Positives = 290/519 (55%), Gaps = 20/519 (3%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            +   N LP S   ++   +    + LGLDLRGG H +L+VD    +   L  +S +LRS
Sbjct: 99  YVVALNLLPNSP--QWMRHIGALPMYLGLDLRGGVHFMLQVDMAGALTKSLDRFSADLRS 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+++ I    + + ++KI + F D + +E    ++             D          
Sbjct: 157 TLREQRIPSAGIERDRSKIIIRFRDEQAREKAITELGKAF--------EDLAFQSEEVGG 208

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           E  ++I +    + ++ + A+++++  +R R++++G++E  IQ+ G+ R+++QLPG QD 
Sbjct: 209 EARLTISIKPEALVRMQNTAVQRNITTLRNRVNELGVAEPIIQQAGADRVIVQLPGVQDT 268

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           ++ + +LG TA +    V                G     +  G   LV+ ++ ++G  +
Sbjct: 269 AKAKDILGRTATLEVRMVDEEGDIDAALRGSVPPGTELFTERGGGPLLVKKQILLTGDRI 328

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV----LTAPVINQ 310
             A   FD   H+P V ++ D  G+R F ++TR+N+GK +A++L  +     +TAPVI +
Sbjct: 329 TDAQPGFDQD-HQPAVHLTLDNNGSRIFKQLTRNNVGKRMAILLVEKNLTEVVTAPVIRE 387

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            I  G+ QISG  +   A  +A +LRAG+L   + IVEER +G  LG+++I KG  + + 
Sbjct: 388 EIGGGRVQISGKMSSIEARDVALLLRAGALAAPMEIVEERTIGPSLGAENISKGFNSTLF 447

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
           G + +  F++  Y   G+++  ++ +N++  + LLS+L ATLTLP +AG+ L +G+A+D+
Sbjct: 448 GFLAVATFIMAYYSAIGVISVVALAINLLFLIGLLSILQATLTLPGMAGMALTVGMAIDA 507

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
           N+L+NERIR+E R   S   ++  G+ RA+  I D+N+T L+A + L  FG G ++GFA+
Sbjct: 508 NVLINERIRDEIRHGASPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMIFGSGPIKGFAV 567

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
            + L IL ++F+A+++ RAM+  +   +K+  + I  + 
Sbjct: 568 VLCLGILTTLFSAVTVSRAMVNLLYGNRKLARVPIGTIK 606



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 82/207 (39%), Gaps = 4/207 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G   +       +  +   +     I     +GP +  E I KG    +   +A+ 
Sbjct: 394 VQISGKMSSIEARDVALLLRAGALAAPMEIVEERTIGPSLGAENISKGFNSTLFGFLAVA 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            +I   +     + ++  L +++   +G  ++      L  +A +   +G +++  V++ 
Sbjct: 454 TFIMAYYS-AIGVISVVALAINLLFLIGLLSILQATLTLPGMAGMALTVGMAIDANVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      S +  I           + T++   ++ L + ++G   I  FA+ +
Sbjct: 513 ERIRDEIR---HGASPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMIFGSGPIKGFAVVL 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRA 828
             GI+    S++ ++  ++  +Y  R 
Sbjct: 570 CLGILTTLFSAVTVSRAMVNLLYGNRK 596



 Score = 41.6 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I+ ++   +GLL  LPNF  +S                           +++ 
Sbjct: 3   RYPLWKYIVIAVSILLGLLYTLPNFFGESPA-------------------------VQIS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                          L   L ++ +           I + FAD+  +    D ++  +
Sbjct: 38  PLRADVRTDTALLQRLEQVLNQQNLPYNGTILEATGIKIRFADTDTQIKAKDILSSEV 95


>gi|289626171|ref|ZP_06459125.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330869596|gb|EGH04305.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 622

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 165/521 (31%), Positives = 274/521 (52%), Gaps = 40/521 (7%)

Query: 35  FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
            P+ +     + + LGLDL GG H +LEVD D  ++  L++Y  E++S L+KE +   S+
Sbjct: 112 TPTWLRHLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSL 171

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
            Q+ N I L F D   +E     V             +     ++        + L+   
Sbjct: 172 PQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTPAK 223

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++LG TA 
Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F      +        +   R+       VE  + I+G  +  A A+FD    +P V+
Sbjct: 284 LEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVN 341

Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304
           I+ D  G       TR N+G+ +                               + + + 
Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVNGVEKDVPVQTFKEEKKII 401

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D+I KG
Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             A + G++ + LF++ +Y  +GL+A  ++ LN+++ LAL+SLLGATLTLP IAGIVL +
Sbjct: 462 IDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTM 521

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+N+T L+   +LF  G G 
Sbjct: 522 GMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|262277202|ref|ZP_06054995.1| protein-export membrane protein SecD [alpha proteobacterium
           HIMB114]
 gi|262224305|gb|EEY74764.1| protein-export membrane protein SecD [alpha proteobacterium
           HIMB114]
          Length = 516

 Score =  208 bits (529), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 186/518 (35%), Positives = 306/518 (59%), Gaps = 10/518 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  +   +   S+   IGL   +PNFL            P+ ++ LGLDL+GGS+L+LEV
Sbjct: 2   LHFSRLKIFFISLTILIGLFFFIPNFLNTPS-----KIFPEKKVVLGLDLQGGSYLLLEV 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D        +   + ++R  ++ E I   + +   ++      +   K  I   +     
Sbjct: 57  DSKPLFKEKIDTKAFDIRKKIRSERINYTNFKINNSQTISFQINLENKNEIEKLLNNK-- 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +NS++  +  K L     +  ++I  S   + ++  +A+EQS+EIIR RID++G  E T
Sbjct: 115 DINSRV-DETNKELQFVINDNIVNINFSAAYLQRIKKNAMEQSLEIIRSRIDELGTREPT 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           I   G  RILI+LPG ++P R+++++GTTAK+SF  +  N++             S   +
Sbjct: 174 IIAQGEERILIELPGIKNPKRIKEIIGTTAKLSFKFLANNDANSNSF--DILDSKSRLEK 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           + VE  + +SG HL  A   FD   +  VV+   D  GA++F   T++NIG+ LA+V+D 
Sbjct: 232 FNVEKTLVLSGEHLTDAQPGFDNINNSSVVNFKLDNFGAKKFAYATKNNIGRRLAIVIDN 291

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +V++AP I  AI +G  QISG F++E A  LA +LR+G+LP  ++I+EER VG DLG +S
Sbjct: 292 QVVSAPTIRDAITAGSGQISGGFSVEEANNLAIVLRSGALPAPMSIIEERTVGPDLGQES 351

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I KG  +++ G VL+++++++ Y   G+ A+ S+ +N+IL L  L+L+ ATLTLP IAGI
Sbjct: 352 IDKGIMSLIIGFVLVIIYILINYRILGIFANISLLVNLILLLGTLTLIEATLTLPGIAGI 411

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L +G+AVD+N+L+ ERI+EE    +++  + D G+ R  +T+ D+NIT LIA +VL+F 
Sbjct: 412 ILTVGMAVDANVLIYERIKEELLIEKNIMIAFDNGYKRVLTTLLDANITTLIAAIVLYFI 471

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           G G V+GFA+T+ + I+ S+FT   + R  +   ++ K
Sbjct: 472 GSGPVKGFAVTLAVGIITSLFTTFILGRLFVASYVKSK 509



 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 40/181 (22%), Positives = 86/181 (47%), Gaps = 5/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            +I     VGP + +E I KGI+ +II  + ++IYI I ++    + A  +L++++   L
Sbjct: 335 MSIIEERTVGPDLGQESIDKGIMSLIIGFVLVIIYILINYRIL-GIFANISLLVNLILLL 393

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G   L      L  +A ++  +G +V+  V++Y+R+++ + +     +     D      
Sbjct: 394 GTLTLIEATLTLPGIAGIILTVGMAVDANVLIYERIKEELLIEK---NIMIAFDNGYKRV 450

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L   +  ++   I+ + +   G   +  FA+ +A GI+ +  ++ FI   + +  Y    
Sbjct: 451 LTTLLDANITTLIAAIVLYFIGSGPVKGFAVTLAVGIITSLFTT-FILGRLFVASYVKSK 509

Query: 829 K 829
           K
Sbjct: 510 K 510


>gi|307245978|ref|ZP_07528060.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254956|ref|ZP_07536775.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306852913|gb|EFM85136.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862074|gb|EFM94049.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
          Length = 604

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 163/523 (31%), Positives = 280/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 93  NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +      V++ L         ++ +  E  +
Sbjct: 153 QYKAVKKGENFATVIEFADEETANKAIRYIR----RVHTALEAASISPTEISFSPSETGL 208

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V S          AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 209 VTS-------RDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 262 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 321 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 381 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A T L  ++  T+G  +L G
Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 487

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 544

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602


>gi|302185763|ref|ZP_07262436.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           syringae 642]
          Length = 622

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 167/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + LF++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         D    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|157376024|ref|YP_001474624.1| preprotein translocase subunit SecF [Shewanella sediminis HAW-EB3]
 gi|157318398|gb|ABV37496.1| protein-export membrane protein SecF [Shewanella sediminis HAW-EB3]
          Length = 315

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 168/299 (56%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I F+R       +S++  + S+  L T+G+N+G+DF GG  + +  + P 
Sbjct: 1   MFQILSIKGTINFLRHAVPISILSLVLVLGSLTSLATNGINWGLDFTGGTVVELEFSSPS 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL  +R+ L S++      QNF   ++ LVRL  + G   A    +  V     +  P  
Sbjct: 61  DLEALRAELSSVETDGAVVQNFGSSRDVLVRLPVKEGV--ATDTQVSQVMDAALKFDPQV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +  E+VGP+I +EL  +G + V+++ I +LIY+  RF+W  ALG++  L  D+  TLG
Sbjct: 119 VQKRVEVVGPQIGKELAEQGGLAVLVALICILIYVSFRFEWRLALGSVAALAHDVIITLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  ++F+LT +A VLT++GYS+ND +VV+DR+R+N           ++++ SI +T+
Sbjct: 179 VFSLLQLDFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKIRKGEP-EEIVNTSITQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T+    + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAVKLGINRE 296


>gi|238895929|ref|YP_002920665.1| aminoglycoside/multidrug efflux system [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238548247|dbj|BAH64598.1| aminoglycoside efflux pump [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 1037

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  L        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQMTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W +   +L        L        ++ +G     V
Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVLLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++  +   ++ +  + E  F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDPQTGTSFAIIERATKAFNQINEARVIA 664



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A    +     ++ +  P 
Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +          + G    + ++G     +  +  PG S      +       
Sbjct: 789  VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  + +     +   W      +  + L
Sbjct: 849  LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    + G+E ++     +LT+IG S  + +++ +   +   L            
Sbjct: 906  GVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +  + L   + TS+A    VLPMA     G     +    +  G++ A   +IF     
Sbjct: 963  SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022

Query: 820  LLFIYDWRAKNAR 832
             + +        R
Sbjct: 1023 FVLVRRRFPLKER 1035


>gi|239906554|ref|YP_002953295.1| protein-export membrane protein SecF [Desulfovibrio magneticus
           RS-1]
 gi|239796420|dbj|BAH75409.1| protein-export membrane protein SecF [Desulfovibrio magneticus
           RS-1]
          Length = 367

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 48/346 (13%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVDL 591
           LI     I F++ R     +S    +     L   G   +G+DF GG+ + V   + +D 
Sbjct: 5   LIRPGTNINFLKYRKLAYLVSAAIVLAGFISLAVKGGPRFGVDFSGGLSIQVRFAKTMDA 64

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVPLST 650
             +   +E + + +++ Q F  E+     ++    D   +  R                +
Sbjct: 65  ERIDKAVEEVGLKNVTVQRFGNEEANEFLIRASDHDVNQEAVRTSIEAALAKNLPDSGYS 124

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF---------------------- 688
           +Q  E+VGPK+  +L  K +  +  S + + IYI  RF                      
Sbjct: 125 LQRLEMVGPKVGADLRGKALEAIFYSVLLIAIYISGRFEHRWMAAGLMAAGLAGGIYVLK 184

Query: 689 ------------------------KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                                   +  +ALGA+   + D+  T+G F+L  IEF+LT VA
Sbjct: 185 LVGASTVWLIVAAMAITLFLCFVMRLKYALGAVVADLHDVFITVGIFSLLNIEFDLTIVA 244

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND ++VYDR+R+ ++    S+ F  +I++SINETL R++ T+    I+V 
Sbjct: 245 ALLTILGYSLNDTIIVYDRIREKLRTTDKSVPFEQVINQSINETLSRTILTAGTTLITVT 304

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +   GG VI  FA+ M  GI+    SS+F+A+PILL +    +K 
Sbjct: 305 CLFFLGGPVIHDFALAMIIGILAGTFSSVFVASPILLDLGSGLSKP 350


>gi|222112517|ref|YP_002554781.1| preprotein translocase subunit SecF [Acidovorax ebreus TPSY]
 gi|221731961|gb|ACM34781.1| protein-export membrane protein SecF [Acidovorax ebreus TPSY]
          Length = 317

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 159/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S +    ++  L T GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIKKDIPFMKYALVLNAVSFITFALAVFFLVTRGLHLSVEFTGGTVMEVAYTQTAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR  +  L   D+  QNF   ++ +VRL  Q G + AQ    E V   +    P  T
Sbjct: 61  IGKVRDTVAGLGYADVVVQNFGTSRDVMVRLPVQKGVTSAQQS--EQVLSALKAQDPEVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL+  G++ + +  + ++IY+  RF+W F + A+   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGEELVHGGLMALGMVVLGIVIYLAFRFEWKFGVAAVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +A VL ++GYSVN+ VV++DR+R+  + +   ++  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LNTHEVIDHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +    VL M  +GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|254236725|ref|ZP_04930048.1| secretion protein SecD [Pseudomonas aeruginosa C3719]
 gi|126168656|gb|EAZ54167.1| secretion protein SecD [Pseudomonas aeruginosa C3719]
          Length = 620

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 166/526 (31%), Positives = 280/526 (53%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K   + + LGLDL GG H +LEVD D  V+  L++Y  E++S L+KE +
Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+      I L F DS   +     +T   +        D +         + + + 
Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLITKDFR--------DFEVVPEERNGLQVLRVA 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G+SE  +QR G++RI+++LPG QD +  +++L
Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F      ++ K       F          +E  V I+G  +  A+A+FD    
Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299
           +P V+I  D  G       TR+N+G+ +                               +
Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            + + +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+IV+Y  +G++A  ++  N+++ +AL+S+LGATLTLP IAG
Sbjct: 455 NIAKGIDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     SV  ++  GF+RA++ I D+N+T+L+   +L+ 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I+ SMFTAI + RAM+  I   +  K + I
Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI 620



 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 92/250 (36%), Gaps = 5/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G           +  +
Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I + +++ F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIYRF-FGVIATVALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   +   ++ G    L  +A ++  +G +V+  V+++ R+R+ +      +S +  I
Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820
            +  N      +  ++ + +    +   G   +  FA+ M+ GI+ +  ++I +   ++ 
Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVN 607

Query: 821 LFIYDWRAKN 830
           L       K 
Sbjct: 608 LIFGGRDFKK 617


>gi|330807630|ref|YP_004352092.1| Sec protein secretion system, subunit SecF [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375738|gb|AEA67088.1| Putative Sec protein secretion system, subunit SecF [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 304

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 159/286 (55%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R    G+++  ++ ++   F  GLNYG+DF GG  + +   RP D++ VR  
Sbjct: 3   RTINFMGVRNVAFGVTLFLTVLALFSWFHKGLNYGLDFTGGTLIELTYERPADVTKVREQ 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +    D   Q+F    + LVR+         Q                 + ++  E V
Sbjct: 63  LVTSGYSDAIVQSFGATTDLLVRMPGADPQLGHQVAEALQ----KAGGDNPAQVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +L+Y+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGILLYLAFRFQWKFAVGAIVSLIHDVIVTVGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ASLIENINISTTQTLLRTMATSI 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  +++  +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIAALLFFGGDNLFGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|172059695|ref|YP_001807347.1| preprotein translocase subunit SecF [Burkholderia ambifaria MC40-6]
 gi|171992212|gb|ACB63131.1| protein-export membrane protein SecF [Burkholderia ambifaria
           MC40-6]
          Length = 316

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 159/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   +N L+RLQ + G + AQ    + V   +    P  +
Sbjct: 61  LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMTALKAQSPDVS 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+ IRF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA+L ++GYSVN+ VV++DR+R+  +     +S  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERRMSVSEVINHAITTTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|332531379|ref|ZP_08407284.1| AcrB protein [Hylemonella gracilis ATCC 19624]
 gi|332039163|gb|EGI75584.1| AcrB protein [Hylemonella gracilis ATCC 19624]
          Length = 1046

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 74/685 (10%), Positives = 183/685 (26%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L           + ++P   P          +   +       
Sbjct: 8   RPIFAWVLAIVIMLAGGLAI-----RSLPVSQYPQIAPP---------QVSINATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    +        +        I L+FA     +    +V   LQ 
Sbjct: 54  AKTLEDTVTQVIEQKMKGIDGLTYITSTSDSTGSASIALTFAAGTDPDIAQVQVQNKLQV 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      +++     +       + S  +    +D +   E   
Sbjct: 114 AMPLLPQEVQRQGVQVTKSTINFLMVLGFVSEDGSMDQTDLSDYVSSNIVDALSRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP++L Q   T A++       N        G    R       
Sbjct: 174 EVQLFGAQ-YAMRVWLDPNKLNQYNLTPAEVVAAIQAQNAQVSAGQIGAAPARVGQQINA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +   +             I           
Sbjct: 233 TITAQTRL-------------QTPAQFEAILVKSQADGAHVRLRDVARIEMGAESYATVS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +   T +        L          ++          S   
Sbjct: 280 RHNGKPAAGVAIKLAAGANALSTAKAVEAALKDLEKFMPQGMKAVIAYDTTPFVEVSIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  ++++ G ++   ++ G+V
Sbjct: 340 VIKTLIEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVMAVAGFSINTLTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKSMGQISGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++++S+  A+ +  A+   +           R       + + 
Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVLVAMVLTPALCATMLKPVDASHHAPRTGFFAWFNRSF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +     +     +    LF    +  +         + +G +   V    
Sbjct: 520 DNATGRYQGFVERMVGKRGRSMLVYGALFVGMCVLFMRLPSSFLPEEDQGILFTMVQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     ++ ++   +  +  + E  F V      G           +K       P
Sbjct: 580 NATQERTLKVVDRVEQHFLQTEKDNVESVFSVAGFSFAGRGENMAIAFVRLKDWSERPSP 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
           +  +Q           +     +  
Sbjct: 640 MQKVQAIAGRAMGNFMQYRDARVFA 664



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 88/236 (37%), Gaps = 6/236 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +      ++       +        ++++  + +E   K + + +P
Sbjct: 259 HVRLRDVARIEMGAESYATVSRHNGKPAAGVAIKLAAGANALSTAKAVEAALKDLEKFMP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                             I + I  +I +   + + +++  + +   L     + + +  
Sbjct: 319 QGMKAVIAYDTTPFVEVSIHEVIKTLIEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G  A+ G   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+ 
Sbjct: 379 TFGVMAVAGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKSMG 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +  G  V  +M      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 437 QISGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVLVAMVLTPAL 492



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 82/250 (32%), Gaps = 13/250 (5%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +     ++   A + V  S   S    +    +   N         +       
Sbjct: 776  NFRMQPEDLNTWRVKNSAGQMVPFSSFGSARWEMGSPRLERYNGLPAIEIAGQAAPGKSS 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   V E+  K    +    T  + +              +  +  S + + + +   
Sbjct: 836  GAAMQAVEEIAAKLPPGVGLAWTGLSYQERLSGSQAP----ALYAL--SLLVVFLCLAAL 889

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W   +  +  + L +   L   +L G+  ++     +LT IG    + +++ +  ++
Sbjct: 890  YESWSVPVAVMLVVPLGVIGALLAASLRGLSNDVYFQVGLLTTIGLGAKNAILIVEFAKE 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
             M       +  +   +++   L   + TS+A  + VLP+A+    G     +    +  
Sbjct: 950  QM---EHGKTLINATLEAVRMRLRPILMTSLAFALGVLPLALASGAGAGSQNAIGTGVLG 1006

Query: 804  GIVVAASSSI 813
            G+V A    I
Sbjct: 1007 GVVAATVLGI 1016


>gi|304407544|ref|ZP_07389196.1| protein-export membrane protein SecF [Paenibacillus curdlanolyticus
           YK9]
 gi|304343495|gb|EFM09337.1| protein-export membrane protein SecF [Paenibacillus curdlanolyticus
           YK9]
          Length = 310

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/306 (27%), Positives = 149/306 (48%), Gaps = 6/306 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +         I   F++ +    G S+   +  I  L   GLNYG+DFK G  + +   +
Sbjct: 1   MHYNDKFHTNIRFDFIKHQKKFFGASLALVVLGIVSLLVFGLNYGVDFKAGTNMDIEIGK 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V     +  L +L   D++          L        D V +   +  +   + +   
Sbjct: 61  AVTQEQAKELLGTLGYKDLAPTVGGASNQRLSVR----FDEVLEQPKVTEILNALKKQYG 116

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                   +V P ++REL  K I  VII+++A++IY+ IRF+W FAL A   ++ D    
Sbjct: 117 DQVSAEVNVVSPDMARELGVKTIYAVIIASVAIMIYVAIRFEWRFALAANIAILYDAFVV 176

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSI 765
           +  F++F +E +L  +AAVLT IGYS+NDK+V++DR+R+N++           ++++ S+
Sbjct: 177 VALFSIFRLEVDLPFIAAVLTTIGYSINDKIVIFDRIRENLRFSKTKNKEQLAEMVNASL 236

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +T+ R+VYT +   I  + + ++G   I  FA+    G+   A SS+ IA+P+ L +  
Sbjct: 237 WQTMARNVYTVLTVLIVAISLYLFGSESIKLFALAKIIGLTSGAYSSVCIASPLWLMLRG 296

Query: 826 WRAKNA 831
            +    
Sbjct: 297 KQKPKQ 302


>gi|296113228|ref|YP_003627166.1| protein translocase subunit SecD [Moraxella catarrhalis RH4]
 gi|295920922|gb|ADG61273.1| protein translocase subunit SecD [Moraxella catarrhalis RH4]
          Length = 625

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 159/526 (30%), Positives = 265/526 (50%), Gaps = 41/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG   VLEVD    +   L   S ++R  L+ E I
Sbjct: 103 NLAQTTPEWLRNLGAAPMKLGLDLRGGVRFVLEVDMAKALEQRLATASQDVRRTLRGEQI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            V S+R   N + L+F ++  +      +   +    +             T    + + 
Sbjct: 163 PVQSLRITDNGMVLTFINTDDRGRAQSILQNQVGADFALRP-------FADTEGAALELT 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +   I ++  +A+ Q++  +R RI+++G++E+ +Q  G++RI+++LPG QD +  +++L
Sbjct: 216 YTDAKIQEINEYAVGQNLTTLRNRINELGVAEALVQSQGTNRIVVELPGVQDTAEAKRVL 275

Query: 207 GTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V  ++                    DG   L+E +  I+G  +     + 
Sbjct: 276 GRTANLEFRMVSEHDMNYAGGIPPAGTEAFAFGSLDGQPMLLERQAIITGERV-QGAQSG 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296
             +  +P V+I+ D  G R     TR  +GK +                           
Sbjct: 335 LDENGRPQVNITLDTAGGRLMQNATRTAVGKQMAVLFIENKQKVSFQEDSSTGELVEVRT 394

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +      QA+      I+G  +   AG LA +LR+G+L   +  VEER +G  L
Sbjct: 395 PYTESRIINRATIQAVLGSSFVITGLDSDAEAGELALLLRSGALAAPMYFVEERTIGPSL 454

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G D+I KG  +   G +L+ L+MIV Y  +G++A+ ++  NVI+ +A++S+LG++LTLP 
Sbjct: 455 GQDNIDKGLFSTQVGYLLVFLWMIVFYRAFGVIANIALAFNVIIMVAIMSILGSSLTLPG 514

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL IG+AVD+N+L+ ERIREE         ++  GF RA+S+IFD+NIT L+   +
Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREELANGTRAKSAIVAGFDRAFSSIFDANITTLLIAFI 574

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           LF  G G ++GFAIT+ + I+ S+FTAI + RAM+     ++K  +
Sbjct: 575 LFAIGTGPIKGFAITLAIGIISSLFTAILVTRAMIQIWYGHRKNLT 620



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 82/206 (39%), Gaps = 4/206 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                     +  +   +           +GP + ++ I KG+    +  + + +++ + 
Sbjct: 421 DSDAEAGELALLLRSGALAAPMYFVEERTIGPSLGQDNIDKGLFSTQVGYLLVFLWMIVF 480

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F + A   L  ++   +   ++ G    L  +A ++  IG +V+  V++++R+R+ 
Sbjct: 481 YR-AFGVIANIALAFNVIIMVAIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREE 539

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +   T + S    I    +         ++   +    +   G   I  FAI +A GI+ 
Sbjct: 540 LANGTRAKS---AIVAGFDRAFSSIFDANITTLLIAFILFAIGTGPIKGFAITLAIGIIS 596

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +  ++I +   ++   Y  R    ++
Sbjct: 597 SLFTAILVTRAMIQIWYGHRKNLTKL 622


>gi|257487217|ref|ZP_05641258.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|320322939|gb|EFW79029.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329938|gb|EFW85926.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330984996|gb|EGH83099.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009168|gb|EGH89224.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 622

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 167/539 (30%), Positives = 277/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F+D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFSDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + LF++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  IL   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|291613430|ref|YP_003523587.1| protein-export membrane protein SecF [Sideroxydans lithotrophicus
           ES-1]
 gi|291583542|gb|ADE11200.1| protein-export membrane protein SecF [Sideroxydans lithotrophicus
           ES-1]
          Length = 310

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 92/302 (30%), Positives = 162/302 (53%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM    +   IS++  + ++  L T GLN+G+DF GG  + V   +  D
Sbjct: 1   MEFFRIKKDIPFMSYGRYTTAISLVTFLFAVFFLATKGLNFGVDFTGGTVMEVHYAQSAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  + S+ + D   QNF   K+ L+++  +   + A  ++ + V   + +      
Sbjct: 61  LDKVRGQVGSIGLNDALVQNFGSSKDVLIQIPLKE--NKAGAKLSDQVMDTLHQQDASVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ ++L+  G + +++ ++ ++ Y+WIRF+W F L AI   + D+   LGF
Sbjct: 119 LRRVEFVGPQVGKDLVDNGAMALLLVSLGIVGYLWIRFEWKFGLAAIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VVV+DR+R+N +    +     +ID +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVVFDRIRENFRKMRKTE-VAVIIDNAITRTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T     I V  M   GG  +  FA+ +  GI+ +  SS+ +A+P+L+     R   
Sbjct: 238 RTIITHGCTQIMVTSMLFLGGETLHYFALALTIGILFSIYSSVLVASPLLMMFGVSREDF 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|315638283|ref|ZP_07893464.1| protein-export membrane protein SecF [Campylobacter upsaliensis
           JV21]
 gi|315481630|gb|EFU72253.1| protein-export membrane protein SecF [Campylobacter upsaliensis
           JV21]
          Length = 332

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 151/285 (52%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM+ RF  + +S++    SI LLF  GL +GIDF GG  + +       +  +R  L 
Sbjct: 19  YDFMKMRFAAISLSLILFFGSIFLLFERGLQFGIDFSGGTLVQLRYENAAPIPQIREILS 78

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                        G    +       G +             + +      ++  ++VGP
Sbjct: 79  QSGQFQNLSVTEFGSAEEITIRFL--GSNENLGDDTGAYISSLLKDTGKFELRRVDVVGP 136

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ ++IS +A+LIYI  RF+W FA+ AI + I D+  TLG   LF I+ N
Sbjct: 137 KVGDELRNKGLMAIVISLVAILIYIAFRFEWRFAIAAIISEIHDVVITLGAICLFKIDVN 196

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+LT++GYS+ND ++++DR+R  +K  +       +I++S++ TL R++ TS   
Sbjct: 197 LDTLAAILTVLGYSLNDTIIIFDRIRDGIKT-SKKNELAPIINESVSATLSRTILTSGLT 255

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +V+ +  +GGS+I  F++ +  G+V    SSIF+A+P L++  
Sbjct: 256 IATVVILYFFGGSMIEGFSLALLVGLVAGTLSSIFVASPTLMWFK 300


>gi|57241992|ref|ZP_00369932.1| protein-export membrane protein, SecD/SecF family [Campylobacter
           upsaliensis RM3195]
 gi|57017184|gb|EAL53965.1| protein-export membrane protein, SecD/SecF family [Campylobacter
           upsaliensis RM3195]
          Length = 323

 Score =  208 bits (528), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 90/285 (31%), Positives = 153/285 (53%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM+ RF  + +S +    SI LLF  GL +GIDF GG  + +       +S +R  L 
Sbjct: 10  YDFMKMRFAAISLSFILFFGSIFLLFEKGLQFGIDFSGGTLVQLRYENAAPISQIREILS 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             +          G    +       G +             + +      ++  ++VGP
Sbjct: 70  QSEQFQNLSVTEFGSAKEITIRFL--GSNENLGDDTGAYISSLLKNTGKFELRRVDVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ ++IS +A+LIYI  RF+W FA+ AI + I D+  TLG   LF I+ N
Sbjct: 128 KVGDELRNKGLMAIVISLVAILIYIAFRFEWRFAIAAIISEIHDVVITLGAICLFKIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+LT++GYS+ND ++++DR+R  +K  +       +I++S++ TL R++ TS   
Sbjct: 188 LDTLAAILTVLGYSLNDTIIIFDRIRDGIKT-SKKNELAPIINESVSATLSRTILTSGLT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            ++V+ +  +GGS+I  F++ +  G+V    SSIF+A+P L++  
Sbjct: 247 IVTVVILYFFGGSMIEGFSLALLVGLVAGTLSSIFVASPTLMWFK 291


>gi|330013590|ref|ZP_08307678.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3]
 gi|328533469|gb|EGF60202.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3]
          Length = 1037

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  L        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQMTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W +   +L        L        ++ +G     V
Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++  +   ++ +  + E  F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDPQTGTSFAIIERATKAFNQINEARVIA 664



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A    +     ++ +  P 
Sbjct: 260 VTLGDVATVEMGAEKYDYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +          + G    + ++G     +  +  PG S      +       
Sbjct: 789  VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  + +     +   W      +  + L
Sbjct: 849  LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    + G+E ++     +LT+IG S  + +++ +   +   L            
Sbjct: 906  GVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +  + L   + TS+A    VLPMA     G     +    +  G++ A   +IF     
Sbjct: 963  SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022

Query: 820  LLFIYDWRAKNAR 832
             + +        R
Sbjct: 1023 FVLVRRRFPLKER 1035


>gi|251793027|ref|YP_003007753.1| preprotein translocase subunit SecD [Aggregatibacter aphrophilus
           NJ8700]
 gi|247534420|gb|ACS97666.1| protein-export membrane protein SecD [Aggregatibacter aphrophilus
           NJ8700]
          Length = 616

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 282/523 (53%), Gaps = 37/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  ++   +   D LR+ L++E  
Sbjct: 104 NLAPATPAWLSSIGGNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRREKY 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +++  +N                      L  V   L    +   +   ++  +S+ 
Sbjct: 164 QYTAIKSAEN-------FGTTITLARP---EQLSDVQRYLRRQHQNLEVKAISDNTLSLG 213

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS   +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+++LPG QD +R +++L
Sbjct: 214 LSDVALNEARESAIEQNLSILRKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEIL 273

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V  N + +    G+         D +    ++  +  + G H+  A++  
Sbjct: 274 GATATLEFRLVNGNVNLEAAARGMVTSDSEVKYDRNNRPIVLYKRAVLGGEHITNASSGV 333

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP--------------- 306
           D  T +P V ++ D  G     + TR NI KP+A +      +                 
Sbjct: 334 DQNTSRPQVSVTLDSEGGEIMSQTTRANIQKPMATLYVEYKDSGKKDENGKTILQKHEEV 393

Query: 307 ---VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q     + QI+G  +   A  LA +LR+G+L   + IVEER +G  LG+ ++ +
Sbjct: 394 INVATIQGRFGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVEQ 453

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A   GL+++V FM++ Y K+GL+A+ ++  N++L + L+SLL  ATLT+P IAGIVL
Sbjct: 454 GLQASFWGLMIVVAFMVIYYRKFGLIANVALIANIVLLVGLMSLLPGATLTMPGIAGIVL 513

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  + V  +++ G+S A+S+IFD+N+T ++  V L+  G 
Sbjct: 514 AVGMSVDANVLIFERIKEEIRNGRPVQQAINEGYSGAFSSIFDANLTTILTAVALYAVGT 573

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G ++GFAIT+ L I ISMFTAI+  RA++ F+   K++  + I
Sbjct: 574 GPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKRIDKLSI 616



 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +G+       + ++ ++ I ++  F L A   LI +I   +G  +L  
Sbjct: 441 TIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYR-KFGLIANVALIANIVLLVGLMSLLP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +G SV+  V++++R+++ ++        +  I++  +        
Sbjct: 500 GATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIR---NGRPVQQAINEGYSGAFSSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   ++ + +   G   I  FAI ++ GI ++  ++I     I+ F+Y  + 
Sbjct: 557 ANLTTILTAVALYAVGTGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKR 610



 Score = 42.8 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   +  IG+L ALPN   +    +  S       + G              
Sbjct: 4   RYPLWKNLMVIFLVAIGILYALPNLYGEDPAVQI-SGTRGQEANSG-------------- 48

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         E+++ LK   +   S+      I + F ++  +    DK+T  L
Sbjct: 49  -----------VLSEVQTVLKDNNLATKSIVLENGSILVRFNNTDVQLLAKDKITEKL 95


>gi|257486452|ref|ZP_05640493.1| multidrug/solvent tranporter [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 1003

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    +         F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  V+
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 76/224 (33%), Gaps = 10/224 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
               +      +   +   V  S   S   +     +S  N    +  L           
Sbjct: 778 RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGE 837

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838 AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892 SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            L+    S  D   ++    L   + TSMA  + V+P+A+  G+
Sbjct: 950 -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGA 992


>gi|53720480|ref|YP_109466.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           K96243]
 gi|76811120|ref|YP_334745.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           1710b]
 gi|126455336|ref|YP_001067602.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           1106a]
 gi|134280202|ref|ZP_01766913.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           305]
 gi|167721142|ref|ZP_02404378.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           DM98]
 gi|167740114|ref|ZP_02412888.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 14]
 gi|167817325|ref|ZP_02449005.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 91]
 gi|167825735|ref|ZP_02457206.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 9]
 gi|167847220|ref|ZP_02472728.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           B7210]
 gi|167895808|ref|ZP_02483210.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           7894]
 gi|167904197|ref|ZP_02491402.1| preprotein translocase subunit SecF [Burkholderia pseudomallei NCTC
           13177]
 gi|167912454|ref|ZP_02499545.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 112]
 gi|167920409|ref|ZP_02507500.1| preprotein translocase subunit SecF [Burkholderia pseudomallei
           BCC215]
 gi|217420444|ref|ZP_03451949.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           576]
 gi|226198408|ref|ZP_03793977.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           Pakistan 9]
 gi|237813730|ref|YP_002898181.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           MSHR346]
 gi|242315899|ref|ZP_04814915.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1106b]
 gi|254180717|ref|ZP_04887315.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1655]
 gi|254194969|ref|ZP_04901399.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           S13]
 gi|254258479|ref|ZP_04949533.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1710a]
 gi|52210894|emb|CAH36882.1| putative protein-export membrane protein [Burkholderia pseudomallei
           K96243]
 gi|76580573|gb|ABA50048.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1710b]
 gi|126228978|gb|ABN92518.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1106a]
 gi|134248209|gb|EBA48292.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           305]
 gi|169651718|gb|EDS84411.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           S13]
 gi|184211256|gb|EDU08299.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1655]
 gi|217395856|gb|EEC35873.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           576]
 gi|225929591|gb|EEH25609.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           Pakistan 9]
 gi|237505134|gb|ACQ97452.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           MSHR346]
 gi|242139138|gb|EES25540.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1106b]
 gi|254217168|gb|EET06552.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           1710a]
          Length = 316

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 158/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       +S++  + ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L +L   D   QNF   +N L+RL  + G + AQ    + V   +        
Sbjct: 61  LEPVRATLGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMAALKAQNADVA 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++ +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|152987443|ref|YP_001346676.1| preprotein translocase subunit SecD [Pseudomonas aeruginosa PA7]
 gi|150962601|gb|ABR84626.1| protein-export membrane protein SecD [Pseudomonas aeruginosa PA7]
          Length = 620

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 166/526 (31%), Positives = 279/526 (53%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K   + + LGLDL GG H +LEVD D  V+  L++Y  E++S L+KE +
Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+      I L F DS   +     +    +        D +         + + + 
Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFR--------DFEVVPEERNGLQVLRVA 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G+SE  +QR G++RI+++LPG QD +  +++L
Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F      ++ K       F          +E  V I+G  +  A+A+FD    
Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299
           +P V+I  D  G       TR+N+G+ +                               +
Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            + + +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G+V + LF+IV+Y  +G++A  ++  N+++ +AL+S+LGATLTLP IAG
Sbjct: 455 NIAKGIDASLWGMVFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     SV  ++  GF+RA++ I D+N+T+L+   +L+ 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I+ SMFTAI + RAM+  I   +  K + I
Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAILVTRAMVNLIFGGRDFKKLWI 620



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G           +  +
Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I + +++ F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGIDASLWGMVFVSLFIIVIYRF-FGVIATVALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   +   ++ G    L  +A ++  +G +V+  V+++ R+R+ +      +S +  I
Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +  N      +  ++ + +    +   G   +  FA+ M+ GI+ +  ++I +   ++ 
Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAILVTRAMVN 607

Query: 822 FIYDWRAKNA 831
            I+  R    
Sbjct: 608 LIFGGRDFKK 617


>gi|271499570|ref|YP_003332595.1| protein-export membrane protein SecD [Dickeya dadantii Ech586]
 gi|270343125|gb|ACZ75890.1| protein-export membrane protein SecD [Dickeya dadantii Ech586]
          Length = 604

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 174/537 (32%), Positives = 289/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    +  
Sbjct: 89  VVALNLAPATPTWLRMLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQT 139

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            D LRS L+++GI   S+R+  N  + + F D + ++N  +            L    + 
Sbjct: 140 MDSLRSDLREKGIQYASVRKADNYGVEILFRDGQLRDNAVN-----------YLTPRHRD 188

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +   +    +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++
Sbjct: 189 LVFNNSGSDALRAVMSDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVE 248

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  N        G            DG    +  +V
Sbjct: 249 LPGIQDTARAKEILGATATLEFRLVNSNVDPAALASGRVPGDTEVMNMRDGGPIALYKRV 308

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T+  + + ++P V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 309 ILTGDHITDSTS-GNDEYNRPQVNISLDSAGGNMMSNFTKDNIGKPMATLFVEYKDSGKK 367

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 368 DANGRAILEKQEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVEE 427

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG  +I +G  A +AGL + +LFMI  Y K+GL+A  ++ LN++L + ++SLL 
Sbjct: 428 RTIGPTLGMQNITQGLEACLAGLAVSILFMIFFYKKFGLIATSALLLNLVLVVGIMSLLP 487

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE    +SV  ++D G+  A+S+IFD+N+
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDANV 547

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT G+ +  SMFTAI   RA++  +   K++K + I
Sbjct: 548 TTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 604



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 76/177 (42%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++   +K  F L A + L+L++   +G  +L  
Sbjct: 429 TIGPTLGMQNITQGLEACLAGLAVSILFMIFFYK-KFGLIATSALLLNLVLVVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  ID+           
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYRGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +    
Sbjct: 545 ANVTTLIKVIILYAVGTGSIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRIKK 601


>gi|261377972|ref|ZP_05982545.1| protein-export membrane protein SecF [Neisseria cinerea ATCC 14685]
 gi|269145836|gb|EEZ72254.1| protein-export membrane protein SecF [Neisseria cinerea ATCC 14685]
          Length = 311

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 95/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   + VD
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++  R  L++L++GD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKTRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDNPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +      ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +  +    +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKSHMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSREN 298

Query: 830 NAR 832
             +
Sbjct: 299 IGK 301


>gi|15640762|ref|NP_230392.1| preprotein translocase subunit SecD [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121591448|ref|ZP_01678724.1| protein-export membrane protein SecD [Vibrio cholerae 2740-80]
 gi|153818848|ref|ZP_01971515.1| protein-export membrane protein SecD [Vibrio cholerae NCTC 8457]
 gi|153822712|ref|ZP_01975379.1| protein-export membrane protein SecD [Vibrio cholerae B33]
 gi|227080922|ref|YP_002809473.1| protein-export membrane protein SecD [Vibrio cholerae M66-2]
 gi|229505643|ref|ZP_04395153.1| protein-export membrane protein SecD [Vibrio cholerae BX 330286]
 gi|229510685|ref|ZP_04400164.1| protein-export membrane protein SecD [Vibrio cholerae B33]
 gi|229517807|ref|ZP_04407251.1| protein-export membrane protein SecD [Vibrio cholerae RC9]
 gi|229608661|ref|YP_002879309.1| preprotein translocase subunit SecD [Vibrio cholerae MJ-1236]
 gi|254847880|ref|ZP_05237230.1| protein-export membrane protein SecD [Vibrio cholerae MO10]
 gi|298499124|ref|ZP_07008931.1| protein-export membrane protein SecD [Vibrio cholerae MAK 757]
 gi|9655188|gb|AAF93908.1| protein-export membrane protein SecD [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121546699|gb|EAX56878.1| protein-export membrane protein SecD [Vibrio cholerae 2740-80]
 gi|126510630|gb|EAZ73224.1| protein-export membrane protein SecD [Vibrio cholerae NCTC 8457]
 gi|126519743|gb|EAZ76966.1| protein-export membrane protein SecD [Vibrio cholerae B33]
 gi|227008810|gb|ACP05022.1| protein-export membrane protein SecD [Vibrio cholerae M66-2]
 gi|229344522|gb|EEO09496.1| protein-export membrane protein SecD [Vibrio cholerae RC9]
 gi|229350650|gb|EEO15591.1| protein-export membrane protein SecD [Vibrio cholerae B33]
 gi|229357866|gb|EEO22783.1| protein-export membrane protein SecD [Vibrio cholerae BX 330286]
 gi|229371316|gb|ACQ61739.1| protein-export membrane protein SecD [Vibrio cholerae MJ-1236]
 gi|254843585|gb|EET21999.1| protein-export membrane protein SecD [Vibrio cholerae MO10]
 gi|297543457|gb|EFH79507.1| protein-export membrane protein SecD [Vibrio cholerae MAK 757]
          Length = 617

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 104 NLAPSTPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       +     +   
Sbjct: 164 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 276 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 335 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 394

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 395 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 454

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 455 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 515 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 617



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 371 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 430

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 431 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 489

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 490 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 546

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 547 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 606

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 607 YGGKRINK 614



 Score = 39.7 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   +  L ALPN   +    +   A            RG S     VD
Sbjct: 4   RYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGA------------RGAS-----VD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D +   L K  +   S+      I + F D+  + +  D ++  L
Sbjct: 47  M---------STLDAVTDALNKAQLSQKSIALENGSILVRFNDTDTQISARDIISEAL 95


>gi|330969087|gb|EGH69153.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 622

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 166/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVD 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + +F++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         D    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + I+I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|253997304|ref|YP_003049368.1| preprotein translocase subunit SecF [Methylotenera mobilis JLW8]
 gi|253983983|gb|ACT48841.1| protein-export membrane protein SecF [Methylotenera mobilis JLW8]
          Length = 321

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 99/297 (33%), Positives = 166/297 (55%), Gaps = 3/297 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM        IS++  + +I  L T GLN+G+DF GG  + V      D
Sbjct: 1   MEFFRVKHDIPFMSYGRLTTAISMITFVLAIVFLATRGLNFGVDFTGGTMIEVNYPHAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +R+ ++S+ + D + QNF   ++ L+RL  + G + AQ  + + V   +  +     
Sbjct: 61  LTKIRTTIDSIGLKDATVQNFGTSRDVLIRLPVRTGLTGAQ--LSDKVLGSLHAVDSSVR 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +   E VGP++  EL  KG + +++    ++IY+ +RF+W FA+ A+   + D+   LGF
Sbjct: 119 MSRIEFVGPQVGTELYEKGSLALLLVIAGIVIYLAMRFEWRFAVAAVIANMHDVIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EFNLT +AAVL ++GYSVN+ VVV+DR+R+N +      S   +ID +I  T+ 
Sbjct: 179 FAFFQWEFNLTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRK-ASVTQVIDNAITRTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           R++ T  +  + VL M ++GG V+ +FA+ +  GI+    SS+ +A PI +++   R
Sbjct: 238 RTIITHFSTQLMVLSMLLFGGEVLHNFALALTIGILFGIYSSVLVACPIAMWLGVNR 294


>gi|326560222|gb|EGE10610.1| preprotein translocase subunit SecD [Moraxella catarrhalis 7169]
 gi|326562866|gb|EGE13153.1| preprotein translocase subunit SecD [Moraxella catarrhalis 46P47B1]
 gi|326563692|gb|EGE13944.1| preprotein translocase subunit SecD [Moraxella catarrhalis
           103P14B1]
 gi|326565229|gb|EGE15414.1| preprotein translocase subunit SecD [Moraxella catarrhalis 12P80B1]
 gi|326566460|gb|EGE16610.1| preprotein translocase subunit SecD [Moraxella catarrhalis BC1]
 gi|326570268|gb|EGE20313.1| preprotein translocase subunit SecD [Moraxella catarrhalis BC8]
 gi|326571004|gb|EGE21028.1| preprotein translocase subunit SecD [Moraxella catarrhalis BC7]
 gi|326573302|gb|EGE23270.1| preprotein translocase subunit SecD [Moraxella catarrhalis
           101P30B1]
 gi|326575801|gb|EGE25724.1| preprotein translocase subunit SecD [Moraxella catarrhalis CO72]
 gi|326576881|gb|EGE26787.1| preprotein translocase subunit SecD [Moraxella catarrhalis O35E]
          Length = 625

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 159/526 (30%), Positives = 265/526 (50%), Gaps = 41/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG   VLEVD    +   L   S ++R  L+ E I
Sbjct: 103 NLAQTTPEWLRNLGAAPMKLGLDLRGGVRFVLEVDMAKALEQRLATASQDVRRTLRGEQI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            V S+R   N + L+F ++  +      +   +    +             T    + + 
Sbjct: 163 PVQSLRITDNGMVLTFINTDDRGRAQSILQNQVGADFALRP-------FADTEGAALELT 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +   I ++  +A+ Q++  +R RI+++G++E+ +Q  G++RI+++LPG QD +  +++L
Sbjct: 216 YTDAKIQEINEYAVGQNLTTLRNRINELGVAEALVQSQGTNRIVVELPGVQDTAEAKRVL 275

Query: 207 GTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V  ++                    DG   L+E +  I+G  +     + 
Sbjct: 276 GRTANLEFRMVSEHDMNYAGGIPPAGTEAFAFGSLDGQPMLLERQTIITGERV-QGAQSG 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296
             +  +P V+I+ D  G R     TR  +GK +                           
Sbjct: 335 LDENGRPQVNITLDTAGGRLMQNATRTAVGKQMAVLFIENKQKVSFQEDSSTGELVEVRT 394

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +      QA+      I+G  +   AG LA +LR+G+L   +  VEER +G  L
Sbjct: 395 PYTESRIINRATIQAVLGSSFVITGLDSDAEAGELALLLRSGALAAPMYFVEERTIGPSL 454

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G D+I KG  +   G +L+ L+MIV Y  +G++A+ ++  NVI+ +A++S+LG++LTLP 
Sbjct: 455 GQDNIDKGLFSTQVGYLLVFLWMIVFYRAFGVIANIALAFNVIIMVAIMSILGSSLTLPG 514

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL IG+AVD+N+L+ ERIREE         ++  GF RA+S+IFD+NIT L+   +
Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREELANGTRAKSAIVAGFDRAFSSIFDANITTLLIAFI 574

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           LF  G G ++GFAIT+ + I+ S+FTAI + RAM+     ++K  +
Sbjct: 575 LFAIGTGPIKGFAITLAIGIISSLFTAILVTRAMIQIWYGHRKNLT 620



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 82/206 (39%), Gaps = 4/206 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                     +  +   +           +GP + ++ I KG+    +  + + +++ + 
Sbjct: 421 DSDAEAGELALLLRSGALAAPMYFVEERTIGPSLGQDNIDKGLFSTQVGYLLVFLWMIVF 480

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F + A   L  ++   +   ++ G    L  +A ++  IG +V+  V++++R+R+ 
Sbjct: 481 YR-AFGVIANIALAFNVIIMVAIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREE 539

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +   T + S    I    +         ++   +    +   G   I  FAI +A GI+ 
Sbjct: 540 LANGTRAKS---AIVAGFDRAFSSIFDANITTLLIAFILFAIGTGPIKGFAITLAIGIIS 596

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +  ++I +   ++   Y  R    ++
Sbjct: 597 SLFTAILVTRAMIQIWYGHRKNLTKL 622


>gi|330981512|gb|EGH79615.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 1044

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 70/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    +         F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGKPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  D   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPDEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  V+
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V  S   S   S     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSSGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMNEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +        +
Sbjct: 1009 ITAVILAIFWVPLFFVTVSGLFKSKQK 1035


>gi|227327501|ref|ZP_03831525.1| preprotein translocase subunit SecD [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 604

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 166/538 (30%), Positives = 288/538 (53%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    + 
Sbjct: 88  FVVALNLAPATPTWLRLLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 138

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+++ I   S+R+I N  + + F D++ +++  + +T   + +         
Sbjct: 139 TMDSLRSDLREKNIPYASVRKIDNYGVEIRFRDAQTRDDGLNYLTTRHRNL--------- 189

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             +L ++    +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI++
Sbjct: 190 --VLSSSGSNLLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 247

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  N        G            DG+  ++  +
Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNSNADATAAANGRVPGDSEVKNMRDGSPVVLFKR 307

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T++ D    +P V+IS D  G       T+D+IGK +A +      +  
Sbjct: 308 VILTGDHITDSTSSTDEYN-QPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGK 366

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                Q+      +I+G      A  L+ +LRAG+L   + IVE
Sbjct: 367 KDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 426

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A + GL+  +LFM+  Y K+G++A  ++  N++L + ++SLL
Sbjct: 427 ERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIVGVMSLL 486

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE    +SV  ++  G+  A+S+I D+N
Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIHEGYKGAFSSIVDAN 546

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +T LI  ++L+  G G+++GFAIT  + I  SMFTAI   RA++  +   K++  + I
Sbjct: 547 VTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +   S+        N    ++ L       G           +  +   
Sbjct: 358 FVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++   +K  F + A + L+ ++
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK-KFGVIATSALVANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  I +
Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIHE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    V  ++   I V+ +   G   I  FAI  A GI  +  ++I     I+  +
Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLL 593

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 594 YGGKRINK 601


>gi|160871927|ref|ZP_02062059.1| protein-export membrane protein SecF [Rickettsiella grylli]
 gi|159120726|gb|EDP46064.1| protein-export membrane protein SecF [Rickettsiella grylli]
          Length = 303

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 171/298 (57%), Gaps = 7/298 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I F+  R W VG+S+L  + S   L T GL +G+DF GG QL V  N   D
Sbjct: 1   MEFFKKQTHINFLGLRSWAVGLSLLLMMISAGALLTKGLRWGLDFTGGSQLQVSFNHTAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           + ++R  L +    DI  Q++   ++ ++ L         Q    + +   I + +P + 
Sbjct: 61  IPLLRKQLVAAGFKDILVQSYGTSRDVVISLA------AHQQMTQQDLSAHIIKALPGAQ 114

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++ +EL  +G + V I+ + ++IYI +RF++ FA+GA   LI D    LG 
Sbjct: 115 LKQIEYIGPQVGKELATQGALAVFIALLGIMIYIALRFEYRFAMGAAVALIHDPIVILGM 174

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+LF IEFNLTA+AA+L +IGYS+ND +V++DR+R+N +      +  D+++ SIN+TL 
Sbjct: 175 FSLFNIEFNLTALAAILAVIGYSLNDTIVIFDRIRENFRRLRKG-TAVDVVNLSINQTLS 233

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ TS    + VL + + GG++I SFA+ +  GIVV   SSI++A  I + +   R 
Sbjct: 234 RTIMTSATTLLVVLSLCLLGGTMIHSFALALIIGIVVGTYSSIYVAGSIAVALGLDRR 291


>gi|158333882|ref|YP_001515054.1| preprotein translocase subunit SecF [Acaryochloris marina
           MBIC11017]
 gi|158304123|gb|ABW25740.1| protein-export membrane protein SecF [Acaryochloris marina
           MBIC11017]
          Length = 319

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 161/302 (53%), Gaps = 22/302 (7%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNY------GIDFKGGIQLGVLAN--------RPVDL 591
           R     IS    +  +  +      Y      G+DF GG +L +  +         P+ +
Sbjct: 9   RGLWWTISAALILAGVISMALSWNQYQAPLKPGLDFTGGTRLQLERDCSKPDNCKTPIQI 68

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + VR  L+  ++ + + Q   G+    V ++ +  +   +T++ E +  K+ ++      
Sbjct: 69  AEVRQILDEQKLAESNVQVI-GQNAQGVAIRTKDLNQEERTKLTEALTAKLGQLDVE--K 125

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP + ++L+  G++ +I+S  A+++Y+ +RF++ +AL AI  L  D+  T+GFF
Sbjct: 126 SQIDTVGPTLGKQLLASGLLALIVSFAAIIVYVSVRFQFDYALFAIVALFHDVLVTMGFF 185

Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           ++ G+    E N   +  +LT+IG+SVND VV+YDR+R+N+K      S  + +D ++N+
Sbjct: 186 SILGLTRGVEVNSLFIVGLLTIIGFSVNDTVVIYDRVRENLKYGAKR-SISETVDIAVNQ 244

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TLGRS+ TS+   + ++ + ++GG  +  FA+ +  G    A SSIFIA+ +L +    +
Sbjct: 245 TLGRSINTSLTTGLPLIGIYIFGGETLKDFALTLIVGFAAGAYSSIFIASTLLAWWRQRQ 304

Query: 828 AK 829
            +
Sbjct: 305 ER 306


>gi|126439004|ref|YP_001060342.1| preprotein translocase subunit SecF [Burkholderia pseudomallei 668]
 gi|126218497|gb|ABN82003.1| protein-export membrane protein SecF [Burkholderia pseudomallei
           668]
          Length = 316

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 158/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       +S++  + ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVVSLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L +L   D   QNF   +N L+RL  + G + AQ    + V   +        
Sbjct: 61  LEPVRATLGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMAALKAQHADVA 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++ +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|332285322|ref|YP_004417233.1| preprotein translocase subunit SecD [Pusillimonas sp. T7-7]
 gi|330429275|gb|AEC20609.1| preprotein translocase subunit SecD [Pusillimonas sp. T7-7]
          Length = 624

 Score =  208 bits (528), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 176/511 (34%), Positives = 287/511 (56%), Gaps = 19/511 (3%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N LP S    + +A+    + LGLDLRGG H +L+VD    + G     + ++R+
Sbjct: 108 FTVALNLLPSSP--NWLTALGARPMYLGLDLRGGVHFLLQVDMQGALTGRYDSLASDVRN 165

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++  I   ++ +    +  SF  +  ++N A ++          +      N      
Sbjct: 166 TLREANIESGNVERADMSVVASFGSADARDNAASELR-------RSMPDMVFANSGENGG 218

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           +  ++  L++  + QV S+A+ Q+M  +  RI+++G++E  IQ+ G+ RI++QLPG QD 
Sbjct: 219 QFLLTGRLTETAVTQVQSYALRQNMTTLHNRINELGVAEPIIQQQGADRIVVQLPGVQDV 278

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVEISGIH 253
           ++ + +LG TA +    V  + S           FG+    D DG   L+  +V ++G +
Sbjct: 279 AKAKDILGRTATLEIRMVDDSPSAMAALAAGTVPFGLERYTDRDGRPLLLRRQVILTGEN 338

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVIN 309
           L  A    D ++ +P V+++ D  G+R F +VTR+NI K +         G V+TAPVI 
Sbjct: 339 LQDAQPGRDQQSQQPSVNLTLDSKGSRIFRDVTRNNINKRMAIVLFEQGHGEVVTAPVIR 398

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             IP G+ QISG+ T + A   A +LRAG+L   + I+EER +G  LG+D+I +G  + +
Sbjct: 399 SEIPGGQVQISGSMTAQEAADTALLLRAGALAAPMEIIEERTIGPSLGADNIRQGFDSTL 458

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
            G + I +F+++ Y   G+ +   +  NV+L LA+LS+L ATLTLP IA I L +G+A+D
Sbjct: 459 YGFIAIAIFIMLYYHLMGMFSTIGLAFNVLLLLAVLSMLQATLTLPGIAAIALTLGMAID 518

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +N+L+NERIREE R   S   ++ +GF RA++TIFDSN+T+LI  V L  FG G +RGFA
Sbjct: 519 ANVLINERIREELRNGASPQQAIHLGFDRAWATIFDSNLTSLIVGVALLAFGSGPIRGFA 578

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +   + IL SMF+++  VR ++      K+ 
Sbjct: 579 VVHCIGILTSMFSSVVGVRGLVNLWYGNKRR 609



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 82/209 (39%), Gaps = 4/209 (1%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G   AQ      +  +   +     I     +GP +  + IR+G    +   IA+
Sbjct: 405 QVQISGSMTAQEAADTALLLRAGALAAPMEIIEERTIGPSLGADNIRQGFDSTLYGFIAI 464

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            I+I + +     + +   L  ++   L   ++      L  +AA+   +G +++  V++
Sbjct: 465 AIFIMLYYHL-MGMFSTIGLAFNVLLLLAVLSMLQATLTLPGIAAIALTLGMAIDANVLI 523

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
            +R+R+ ++      S +  I    +        +++ + I  + +  +G   I  FA+ 
Sbjct: 524 NERIREELR---NGASPQQAIHLGFDRAWATIFDSNLTSLIVGVALLAFGSGPIRGFAVV 580

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              GI+ +  SS+     ++   Y  + +
Sbjct: 581 HCIGILTSMFSSVVGVRGLVNLWYGNKRR 609


>gi|119945871|ref|YP_943551.1| preprotein translocase subunit SecF [Psychromonas ingrahamii 37]
 gi|119864475|gb|ABM03952.1| protein translocase subunit secF [Psychromonas ingrahamii 37]
          Length = 314

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 166/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F LI     + FM+        S+   + S+  L  + LN+G+DF GG  + V   +P 
Sbjct: 1   MFELIKSKKTLPFMQYSKPASWFSMFLIVASVAALSINWLNWGLDFTGGTVIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L  VR  L S    D   Q+F   ++ ++RL  + G    +    ++++          
Sbjct: 61  VLPDVRDVLASNDFSDAVVQHFGTSRDVMIRLAPREG-VRGEVIGTQVLESLQNADFGQV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +II+ I +LIY+ IRF+W  A G++  L  DI  TLG
Sbjct: 120 DMRRIEFVGPNVGAELANSGGLAIIIALICILIYVSIRFEWRLACGSVLALAHDIIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           FF+LF IE +LT +AA+L ++GYS+ND +VV+DR+R+N +L  T+ +  D++DKS+ +TL
Sbjct: 180 FFSLFKIEVDLTVLAALLAVVGYSLNDTIVVFDRIRENFRLL-TTATSNDIVDKSLTQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      ++ + ++GG++I  FA  +  G++V   SSI++A+ + + +   R 
Sbjct: 239 SRTLITSGTTIFVLISLFIFGGALIHGFATALLIGVIVGTYSSIYVASALAIKLGISRE 297


>gi|51102955|gb|AAT96103.1| SecD [Pseudomonas viridiflava]
          Length = 622

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 163/521 (31%), Positives = 270/521 (51%), Gaps = 40/521 (7%)

Query: 35  FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
            P+ +       + LGLDL GG H +LEVD D  ++  L++Y  E+++ L+KE +   S+
Sbjct: 112 TPNWLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKTLLRKEKVRYRSL 171

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
            Q+ N I L F D   +E     V             +     ++        + L+   
Sbjct: 172 PQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTPAK 223

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++LG TA 
Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F               +   R+       VE  + I+G  +  A A+FD    +P V+
Sbjct: 284 LEFRLGA-GPEDSKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVN 341

Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304
           I+ D  G       TR N+G+ +                               + + + 
Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVNGVEKDVPVQTFKEDKKII 401

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D+I KG
Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             A + G++ + LF++ +Y  +GL+A  ++  N+++ LAL+SLLGATLTLP IAGIVL +
Sbjct: 462 VDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTM 521

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+  RIREE     +V  ++  GF RAY+ I D+N+T L+   +LF  G G 
Sbjct: 522 GMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 91/250 (36%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         D    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KG+   +   + + ++I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 FNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 SEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 41.6 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVT-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALTDA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|50120061|ref|YP_049228.1| preprotein translocase subunit SecD [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610587|emb|CAG74032.1| protein-export membrane protei [Pectobacterium atrosepticum
           SCRI1043]
          Length = 615

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 162/538 (30%), Positives = 287/538 (53%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L           +    + LGLDLRGG H ++EVD D  +    + 
Sbjct: 99  FVVALNLAPATPTWLR---------VLGAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 149

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+++ I   ++R++ N  + + F D++ +++  + +T   + +         
Sbjct: 150 TMDSLRSDLREKNIPYAAVRKVDNYGVEIRFRDAQTRDDGLNYLTSRHRNL--------- 200

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             +L ++    +   +S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI++
Sbjct: 201 --VLSSSGSNLLRAAMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 258

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  +        G            DG+  ++  +
Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNSDADATAAANGRVPGDSEVKNMRDGSPVVLFKR 318

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T++ D    +P V+IS D  G       T+D+IGK +A +      +  
Sbjct: 319 VILTGDHITDSTSSNDEYN-RPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGK 377

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                Q+      +I+G      A  L+ +LRAG+L   + IVE
Sbjct: 378 KDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 437

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A + GL+  +LFM+  Y K+G++A  ++  N++L + ++SLL
Sbjct: 438 ERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIVGVMSLL 497

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE    +SV  ++  G+  A+S+I D+N
Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIHEGYKGAFSSIVDAN 557

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +T LI  ++L+  G G+++GFAIT  + I  SMFTAI   RA++  +   K++  + I
Sbjct: 558 VTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI 615



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +   S+        N    ++ L       G           +  +   
Sbjct: 369 FVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 428

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++   +K  F + A + L+ ++
Sbjct: 429 LIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK-KFGVIATSALVANL 487

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  I +
Sbjct: 488 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIHE 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    V  ++   I V+ +   G   I  FAI  A GI  +  ++I     I+  +
Sbjct: 545 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLL 604

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 605 YGGKRINK 612


>gi|330807629|ref|YP_004352091.1| Sec protein secretion system, subunit SecD [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375737|gb|AEA67087.1| Putative Sec protein secretion system, subunit SecD [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 622

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 158/526 (30%), Positives = 276/526 (52%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K   + + LGLDL GG H +LEVD +  ++  L++Y  +++S L+KE +
Sbjct: 107 NLAQTTPQWLRKLGAHPMKLGLDLSGGVHFLLEVDMEKALDARLKVYEGDVKSLLRKERV 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q+   I L F+D+  +E     +          +  D     ++        + 
Sbjct: 167 RYRSLPQLDGAIQLGFSDTDTREQARSLIRKNFND-FDVVPADLNGQPVLR-------LA 218

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 219 MTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRIL 278

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F                   R+ +     +E  + I+G  +  A A FD +  
Sbjct: 279 GKTANLEFRLAAEP-GASKATSESFEFREGNRPAAQIERGLIITGDQVTDAKAGFDEQG- 336

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299
           +P V+I  D  G       TR N+G+ +                               +
Sbjct: 337 RPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPTTTYTKQVVNGVEKDVAVQTFKE 396

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            + + +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 397 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 456

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+I +Y  +G++A  ++ +N+++ LAL+SLLGATLTLP IAG
Sbjct: 457 NITKGIDASLWGMLFVSLFIIAIYRFFGIIATVALAVNMVMLLALMSLLGATLTLPGIAG 516

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     ++  +++ GF RA++ I D+N+T L+   +LF 
Sbjct: 517 IVLTMGMAVDANVLIFSRIREEIAAGMTIQRAINEGFGRAFTAILDANLTTLLVGGILFA 576

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 577 MGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 622



 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 92/250 (36%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + V   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQVVNGVEKDVAVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F + A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRF-FGIIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           +++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 VNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMTIQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++         +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            I+  R    
Sbjct: 610 LIFGGRDFKK 619



 Score = 44.3 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 40/389 (10%), Positives = 94/389 (24%), Gaps = 34/389 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +GL+ + PN  P     +                  G+   L+V 
Sbjct: 4   KYPLWKYVLILAVLAVGLIYSAPNLYPDDPAIQV----------------SGASTALQVT 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
           + D       + +  +        +   S+ +      L  A +  +    D V   L  
Sbjct: 48  QADLDRASAALKASNIE-------VKAASIAENGKGGLLRLAKAEDQLPAKDVVRKALGD 100

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174
                LN+       +         +    +       +  +  A++  +++    +  +
Sbjct: 101 DYVVALNLAQTTPQWLRKLGAHPMKLGLDLSGGVHFLLEVDMEKALDARLKVYEGDVKSL 160

Query: 175 GISESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
              E    R        I +         + R L+              N +      + 
Sbjct: 161 LRKERVRYRSLPQLDGAIQLGFSDTDTREQARSLIRKNFNDFDVVPADLNGQPVLRLAMT 220

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             + ++  +Y ++  +      +N           +    I  +  G +   E  R    
Sbjct: 221 PAKLAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGK 280

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                        A          +        IE   I+       +          + 
Sbjct: 281 TANLEFRLAAEPGASKATSESFEFREGNRPAAQIERGLIITGDQVTDAKAGFDEQGRPQV 340

Query: 352 VGADLGSDSIYKGTCA-IVAGLVLIVLFM 379
                G              G  + V+F+
Sbjct: 341 NIRLDGHGGELMSRATRSNVGRSMAVIFI 369


>gi|114320564|ref|YP_742247.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226958|gb|ABI56757.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1058

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 86/687 (12%), Positives = 187/687 (27%), Gaps = 46/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL       L    ++++P  +P               +V++   
Sbjct: 8   RPIFASVISIIILVAGLAS-----LRALPIEQYPDVVPPE-------------IVVQAAY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
               +  L +  +  L   +     +             +I++SF      +     V  
Sbjct: 50  PGASSEVLAEAVAAPLEQEINGVDDMIYMESTSTDAGTVQISVSFEMGTDPDQAEINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q    +L    +   +         ++++  +        +E S   +   ID++   
Sbjct: 110 RVQAALPRLPQAVRDQGVRVEARSTNILLVATLSSPDGRHGTLELSNYALLNIIDELERL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +     +    +     P +L Q   T A+++      N        G     D  
Sbjct: 170 PGVGEASLFGQQDYAMRIWLRPDKLAQYDLTPAEVAAAIREQNAQFAAGQMGAEPAPDGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  + ++ G               +    I   +                     
Sbjct: 230 AFTLTVTTRGQLEGAE-------------EFEAIILRSDESGATLRLGDVARAELGAQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T E      A             +          
Sbjct: 277 AFSATYNGEPTVPIGVYQAPGANALETAEQVRAALADSAERFPEGVEYTIPYDTTEFVEV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I  GLV++V F+ + + +  L+   +I +++I T A +  +G ++ L ++
Sbjct: 337 SIREVYTTLLIAVGLVVLVTFVFLQHLRATLIPITAIPVSLIGTFAGMQAMGFSVNLLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD+ I+V E +      K      +      +    +  S +  +     
Sbjct: 397 FGLVLAIGIVVDNAIIVMENVERLMREKGLKAREASVETMKQVSGAVVSSTLVLVAVFAP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSR 530
           + F G   G   R FA+T+  S++IS   A+++  AM   +             +     
Sbjct: 457 VAFLGGLTGELYRQFAVTIAFSVVISGVVALTLTPAMCALLLDKQPKTPWLPFRLFNAGF 516

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANR 587
             L    +A      R   VG+ +        +     +  G+   + +G   +      
Sbjct: 517 EHLTRAFVAAVGFLVRNRTVGVGLFALAVGGAVFLVERMPDGLVPQEDQGFALVVAQLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L+   +  ++L       +       F                             P
Sbjct: 577 TSALNRTEAVRDALAAQLTQLEEIQEFTAFAGFDIIAGSLRTNAAVGFVNFTDWADRPRP 636

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +   L    +   I
Sbjct: 637 DQHAAAMSERISGMGFGLQEANVFAFI 663



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q    S          +   Q    +++     +        E  P     
Sbjct: 265 DVARAELGAQSYAFSATYNGEPTVPIGVYQAPGANALETAEQVRAALADSAERFPEGVEY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  +     IR+    ++I+   +++  ++  +     L  IT + + +  T    
Sbjct: 325 TIPYDTTEFVEVSIREVYTTLLIAVGLVVLVTFVFLQHLRATLIPITAIPVSLIGTFAGM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   NL  +  ++  IG  V++ ++V + +     +    +  R+   +++ +  G 
Sbjct: 385 QAMGFSVNLLTLFGLVLAIGIVVDNAIIVMENV--ERLMREKGLKAREASVETMKQVSGA 442

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V +++       P+A  G   G +   FA+ +AF +V++   ++ +   +   + D + 
Sbjct: 443 VVSSTLVLVAVFAPVAFLGGLTGELYRQFAVTIAFSVVISGVVALTLTPAMCALLLDKQP 502

Query: 829 K 829
           K
Sbjct: 503 K 503



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 62/166 (37%), Gaps = 15/166 (9%)

Query: 677  AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + + + +  ++ +W   L   T +   +     F  L G   ++     +L LIG +  
Sbjct: 880  LLMVFLILAAQYERWTLPLAVATAVPFAVLGAALFALLRGFPNDIYFQVGLLVLIGLAAK 939

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
            + +++ +   +N     T ++  +    +  +     + T++   I  LP+      G +
Sbjct: 940  NAILIVEFAAQNRA---TGMTSTEAAMAAARQRFRAIMMTALTFIIGTLPLVFATGAGAA 996

Query: 793  VIGSFAIPMAFGIV-VAASSSIFIAAPILLFIYD-----WRAKNAR 832
                    +  G++  +  + +F+  P+   + +        + AR
Sbjct: 997  SRQEIGTVVVGGMLAASTLALLFV--PLFYKLLEDVATWRNERRAR 1040


>gi|71737435|ref|YP_273560.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557988|gb|AAZ37199.1| protein-export membrane protein SecD [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 622

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 167/539 (30%), Positives = 277/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F+D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFSDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + LF++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 44.7 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 31/118 (26%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  IL   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    + +  D V   L
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLSAKDVVRKAL 98


>gi|83814389|ref|YP_445941.1| preprotein translocase subunit SecF [Salinibacter ruber DSM 13855]
 gi|294507852|ref|YP_003571910.1| protein-export membrane protein [Salinibacter ruber M8]
 gi|83755783|gb|ABC43896.1| protein-export membrane protein SecF [Salinibacter ruber DSM 13855]
 gi|294344180|emb|CBH24958.1| Protein-export membrane protein [Salinibacter ruber M8]
          Length = 303

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 159/293 (54%), Gaps = 10/293 (3%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R  G  IS      SI  L T GL  GIDF+GG++  V     ++   VRS L      
Sbjct: 14  NRRIGYIISGTLLAISILSLLTKGLALGIDFRGGMEFVVGNTTDLNTVDVRSALTESFEE 73

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           +   + F    + +   +     ++    V  +             I++T +VGP+ + +
Sbjct: 74  EPEVKRFGDVGHLVRISKKGDITTMENQVVSAL---NAQFSGRDIAIESTNVVGPRFAED 130

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL------FGIEF 718
           L R  I  V+ + + + +YI +RF+W ++LGA+  L+ D+T TLG F++      F ++ 
Sbjct: 131 LKRGAIYAVLGALLVVFLYIMVRFEWRYSLGAVAALVHDVTITLGIFSVLAGIAPFSVQI 190

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           + + +AA LT++GYS+ND VVV+DR+R+ + L+  + +F +++++SIN TL R+V TS+ 
Sbjct: 191 DQSLIAAFLTIVGYSLNDTVVVFDRVREYVNLF-KTEAFDEIVNRSINATLSRTVVTSLT 249

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             I V  + V+GG V+  F+  +  G+V+   SSIF+A+P ++ +     K+A
Sbjct: 250 TLIVVTILFVFGGEVLRGFSFALIVGVVIGTYSSIFVASPTIVELNRRLEKSA 302


>gi|71065835|ref|YP_264562.1| preprotein translocase subunit SecF [Psychrobacter arcticus 273-4]
 gi|71038820|gb|AAZ19128.1| protein translocase subunit secF [Psychrobacter arcticus 273-4]
          Length = 414

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 148/288 (51%), Gaps = 4/288 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM+       +SI+  I SI  +  +GLN G+DF GG+   V   + V+   V + L 
Sbjct: 104 IPFMKIEKPMGILSIILVIGSIIAIAVNGLNLGLDFTGGVSADVRYEQSVEQGDVVNALA 163

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                D   Q     +  L+RL  Q   S     +   + + +        I N  I+G 
Sbjct: 164 DNGFDDAVVQYLGTSQELLIRLPPQ---SDNIDGLNTSLSEALALPNNNVEISNVNIIGS 220

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  E+    ++ ++++   ML Y+ +RF++  ALGA+ +L  D   T+G FALFG  F+
Sbjct: 221 QVGNEVYLSSVMSIVLALACMLGYVALRFQFKLALGAVLSLFHDAIVTIGVFALFGFPFD 280

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AA+L LIGYS+ND +VVYDR+R+N +     IS R  ID S+ ETL R++ T    
Sbjct: 281 LTVLAAILALIGYSLNDTIVVYDRIRENFRR-VRGISPRQTIDLSLTETLRRTIMTISTV 339

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + VL M   GG  +  F+  +  G++    SS +IA+ I L +   R
Sbjct: 340 LLVVLAMLFLGGDGLFWFSAALFIGLLAGTYSSTYIASSIPLAMGLSR 387


>gi|227113438|ref|ZP_03827094.1| preprotein translocase subunit SecD [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 604

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 166/538 (30%), Positives = 287/538 (53%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    + 
Sbjct: 88  FVVALNLAPATPTWLRLLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 138

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+++ I   S+R+I N  + + F D++ ++   + +T   + +         
Sbjct: 139 TMDSLRSDLREKNIPYASVRKIDNYGVEIRFRDAQTRDEGINYLTTRHRNL--------- 189

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             +L ++    +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI++
Sbjct: 190 --VLSSSGSNLLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 247

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  N        G            DG+  ++  +
Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNSNADATAAANGRVPGDSEVKNMRDGSPVVLFKR 307

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T++ D    +P V+IS D  G       T+D+IGK +A +      +  
Sbjct: 308 VILTGDHITDSTSSTDEYN-QPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGK 366

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                Q+      +I+G      A  L+ +LRAG+L   + IVE
Sbjct: 367 KDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 426

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A + GL+  +LFM+  Y K+G++A  ++  N++L + ++SLL
Sbjct: 427 ERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIVGVMSLL 486

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE    +SV  ++  G+  A+S+I D+N
Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIHEGYKGAFSSIVDAN 546

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +T LI  ++L+  G G+++GFAIT  + I  SMFTAI   RA++  +   K++  + I
Sbjct: 547 VTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +   S+        N    ++ L       G           +  +   
Sbjct: 358 FVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++   +K  F + A + L+ ++
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK-KFGVIATSALVANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  I +
Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIHE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    V  ++   I V+ +   G   I  FAI  A GI  +  ++I     I+  +
Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLL 593

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 594 YGGKRINK 601


>gi|167912452|ref|ZP_02499543.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 112]
          Length = 624

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|167920407|ref|ZP_02507498.1| preprotein translocase subunit SecD [Burkholderia pseudomallei
           BCC215]
          Length = 622

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|167740112|ref|ZP_02412886.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 14]
          Length = 622

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|303230221|ref|ZP_07316989.1| export membrane protein SecF [Veillonella atypica ACS-134-V-Col7a]
 gi|303231810|ref|ZP_07318526.1| export membrane protein SecF [Veillonella atypica ACS-049-V-Sch6]
 gi|302513517|gb|EFL55543.1| export membrane protein SecF [Veillonella atypica ACS-049-V-Sch6]
 gi|302515147|gb|EFL57121.1| export membrane protein SecF [Veillonella atypica ACS-134-V-Col7a]
          Length = 296

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 82/295 (27%), Positives = 154/295 (52%), Gaps = 1/295 (0%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           ++   +R   W   IS +  I S+  +FT G N+GID+ GG  + V   +PV++S VR  
Sbjct: 1   MSFNVIRHHRWWFVISSILVIISLISIFTKGFNFGIDYTGGTIVEVQFTKPVEVSQVRDV 60

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L++  + +   Q   G+                +      V +K+   +  +T++  E V
Sbjct: 61  LKTFDLENAQIQ-LSGDTAETAGEDVMIRTRNLEPSESAAVVEKLNSDIGENTVKRIETV 119

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  I  E+ +  ++ ++I+   + +YI  RF++  A+ A+T +  D+   LG F+ F +E
Sbjct: 120 GAVIGSEVTQHALLNLVIAFAVLALYISYRFEYRIAVSALTAIFHDLIMVLGVFSFFQLE 179

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + + +AA+LT++GYS+N+ VV++DR+R+N   +  + +F DL + SI +++ RS+YT  
Sbjct: 180 IDASFLAAILTVVGYSMNESVVIFDRVRENAHTHKRTDTFEDLANASIAQSIHRSIYTLA 239

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               + + + V+GG    +FA+ M  G    A SSI +A  + +   +    + R
Sbjct: 240 TVMFACVSLFVFGGDTTKNFALCMIIGFASGAYSSICVATSLWVLWKNRNKNDIR 294


>gi|289649078|ref|ZP_06480421.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 622

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 166/521 (31%), Positives = 275/521 (52%), Gaps = 40/521 (7%)

Query: 35  FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
            P+ +     + + LGLDL GG H +LEVD D  ++  L++Y  E++S L+KE +   S+
Sbjct: 112 TPTWLRHLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSLLRKEKVRYRSL 171

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
            Q+ N I L F D   +E     V             +     ++        + L+Q  
Sbjct: 172 PQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTQAK 223

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++LG TA 
Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F      +        +   R+       VE  + I+G  +  A A+FD    +P V+
Sbjct: 284 LEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVN 341

Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304
           I+ D  G       TR N+G+ +                               + + + 
Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVNGVEKDVPVQTFKEEKKII 401

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D+I KG
Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             A + G++ + LF++ +Y  +GL+A  ++ LN+++ LAL+SLLGATLTLP IAGIVL +
Sbjct: 462 IDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMSLLGATLTLPGIAGIVLTM 521

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+N+T L+   +LF  G G 
Sbjct: 522 GMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.9 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|119505403|ref|ZP_01627477.1| protein export protein SecD [marine gamma proteobacterium HTCC2080]
 gi|119458858|gb|EAW39959.1| protein export protein SecD [marine gamma proteobacterium HTCC2080]
          Length = 633

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 171/526 (32%), Positives = 274/526 (52%), Gaps = 38/526 (7%)

Query: 30  SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDL GG H  LEVD        L+ Y   ++  L++  I
Sbjct: 107 NLAPTTPEWLKRGGAQPMKLGLDLSGGVHFKLEVDVAAAKERRLETYESGIKRGLREARI 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R    +I +SF            V    + + + L  +   + +    + E+   
Sbjct: 167 RGL-VRLQGQRIGMSFLSEA--------VREDARKITADLYPELLLDRVDGVDKWELFAE 217

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++   + +V+ +A++Q++  IR R++++G+SE  +Q+ GS+RI+++LPG QD +  +++L
Sbjct: 218 VTDATMKEVVDYAVDQNLTTIRNRVNELGVSEPLVQKQGSNRIVVELPGIQDTAEAKRIL 277

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRD-SDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           G  A + F  V   N+         +  D  +G    +E ++ I+G  ++ A A FD   
Sbjct: 278 GKVANLEFRLVAETNAPVTERQRFEYRSDAREGMTEWLERELIITGERVSNAAAGFDQNN 337

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301
            +P V I+ D  G       TR NI + +                         V  D +
Sbjct: 338 -QPNVSITLDGEGGMLMSRATRSNIKRRMGVLFIERKYRTRYEQDENGEEVVVRVPYDEK 396

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    + Q+      QI+G  +   A  LA MLRAG+L   +  VEER VG  LG+++I
Sbjct: 397 KLLTAPVIQSALGASFQITGLDSPGEASELALMLRAGALAAPITFVEERTVGPSLGAENI 456

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G  ++  GL L+V+FMI+ Y  +G+ A  ++  N++L LA +SLLGATLTLP IAGIV
Sbjct: 457 ALGVKSVQIGLALVVIFMILYYRVFGIAAVVALTTNLVLLLAFMSLLGATLTLPGIAGIV 516

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+  RIREE  +  S   ++D GF RA +TI D+NIT LI  V+L+  G
Sbjct: 517 LTVGMAVDANVLIFARIREELARRMSPQMAIDAGFERAVATILDANITTLIVAVILYAVG 576

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            G ++GFA+T+ L IL SMFTAI   RA++  I   +++ S+ I P
Sbjct: 577 TGPIKGFAVTLSLGILTSMFTAILGTRALVNLIYGGRRVDSLSIGP 622



 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 100/277 (36%), Gaps = 5/277 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI        L+     +      G + +        +       +      D       
Sbjct: 342 SITLDGEGGMLMSRATRSNIKRRMGVLFIERKYRTRYEQDENGEEVVVRVPYDEKKLLTA 401

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +   +Q     +     E  +  +   +    T      VGP +  E I  G+ 
Sbjct: 402 PVIQSALGASFQITGLDSPGEASELALMLRAGALAAPITFVEERTVGPSLGAENIALGVK 461

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V I    ++I++ + ++  F + A+  L  ++   L F +L G    L  +A ++  +G
Sbjct: 462 SVQIGLALVVIFMILYYRV-FGIAAVVALTTNLVLLLAFMSLLGATLTLPGIAGIVLTVG 520

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +V+  V+++ R+R+ +      +S +  ID      +   +  ++   I  + +   G 
Sbjct: 521 MAVDANVLIFARIREELA---RRMSPQMAIDAGFERAVATILDANITTLIVAVILYAVGT 577

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             I  FA+ ++ GI+ +  ++I     ++  IY  R 
Sbjct: 578 GPIKGFAVTLSLGILTSMFTAILGTRALVNLIYGGRR 614


>gi|161525836|ref|YP_001580848.1| preprotein translocase subunit SecF [Burkholderia multivorans ATCC
           17616]
 gi|189349443|ref|YP_001945071.1| preprotein translocase subunit SecF [Burkholderia multivorans ATCC
           17616]
 gi|221202266|ref|ZP_03575300.1| protein-export membrane protein SecF [Burkholderia multivorans
           CGD2M]
 gi|221209144|ref|ZP_03582137.1| protein-export membrane protein SecF [Burkholderia multivorans
           CGD2]
 gi|221214470|ref|ZP_03587441.1| protein-export membrane protein SecF [Burkholderia multivorans
           CGD1]
 gi|160343265|gb|ABX16351.1| protein-export membrane protein SecF [Burkholderia multivorans ATCC
           17616]
 gi|189333465|dbj|BAG42535.1| preprotein translocase SecF subunit [Burkholderia multivorans ATCC
           17616]
 gi|221165727|gb|EED98202.1| protein-export membrane protein SecF [Burkholderia multivorans
           CGD1]
 gi|221170962|gb|EEE03416.1| protein-export membrane protein SecF [Burkholderia multivorans
           CGD2]
 gi|221177840|gb|EEE10253.1| protein-export membrane protein SecF [Burkholderia multivorans
           CGD2M]
          Length = 316

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 95/306 (31%), Positives = 161/306 (52%), Gaps = 6/306 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L  L   D   QNF   +N L+RLQ + G + AQ    + V   +    P  T
Sbjct: 61  LEPVRATLGKLGYADAQVQNFGTSRNVLIRLQLKEGLTSAQQS--DQVMTALKAQSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+ IRF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSIRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA+L ++GYSVN+ VV++DR+R+  +     ++  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRIRETFRR-ERKMTVPEVINHAITTTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA-- 828
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 829 -KNARI 833
            K  ++
Sbjct: 298 IKEKKV 303


>gi|313109239|ref|ZP_07795207.1| protein-export membrane protein SecD [Pseudomonas aeruginosa 39016]
 gi|310881709|gb|EFQ40303.1| protein-export membrane protein SecD [Pseudomonas aeruginosa 39016]
          Length = 620

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 165/526 (31%), Positives = 279/526 (53%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K   + + LGLDL GG H +LEVD D  V+  L++Y  E++S L+KE +
Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+      I L F DS   +     +    +        D +         + + + 
Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFR--------DFEVVPEERNGLQVLRVA 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G+SE  +QR G++RI+++LPG QD +  +++L
Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F      ++ K       F          +E  V I+G  +  A+A+FD    
Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299
           +P V+I  D  G       TR+N+G+ +                               +
Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            + + +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+IV+Y  +G++A  ++  N+++ +AL+S+LGATLTLP IAG
Sbjct: 455 NIAKGVDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     SV  ++  GF+RA++ I D+N+T+L+   +L+ 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I+ SMFTAI + RAM+  I   +  K + I
Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI 620



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G           +  +
Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KG+   +   + + ++I + +++ F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGVDASLWGMLFVSLFIIVIYRF-FGVIATVALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   +   ++ G    L  +A ++  +G +V+  V+++ R+R+ +      +S +  I
Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +  N      +  ++ + +    +   G   +  FA+ M+ GI+ +  ++I +   ++ 
Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVN 607

Query: 822 FIYDWRAKNA 831
            I+  R    
Sbjct: 608 LIFGGRDFKK 617


>gi|167817323|ref|ZP_02449003.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 91]
 gi|167904195|ref|ZP_02491400.1| preprotein translocase subunit SecD [Burkholderia pseudomallei NCTC
           13177]
          Length = 621

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|116051846|ref|YP_789311.1| preprotein translocase subunit SecD [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296387663|ref|ZP_06877138.1| preprotein translocase subunit SecD [Pseudomonas aeruginosa PAb1]
 gi|115587067|gb|ABJ13082.1| protein-export membrane protein SecD [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 620

 Score =  208 bits (527), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 165/526 (31%), Positives = 279/526 (53%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K   + + LGLDL GG H +LEVD D  V+  L++Y  E++S L+KE +
Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+      I L F DS   +     +    +        D +         + + + 
Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFR--------DFEVVPEERNGLQVLRVA 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G+SE  +QR G++RI+++LPG QD +  +++L
Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F      ++ K       F          +E  V I+G  +  A+A+FD    
Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299
           +P V+I  D  G       TR+N+G+ +                               +
Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            + + +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+IV+Y  +G++A  ++  N+++ +AL+S+LGATLTLP IAG
Sbjct: 455 NIAKGVDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     SV  ++  GF+RA++ I D+N+T+L+   +L+ 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I+ SMFTAI + RAM+  I   +  K + I
Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI 620



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G           +  +
Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KG+   +   + + ++I + +++ F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGVDASLWGMLFVSLFIIVIYRF-FGVIATVALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   +   ++ G    L  +A ++  +G +V+  V+++ R+R+ +      +S +  I
Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +  N      +  ++ + +    +   G   +  FA+ M+ GI+ +  ++I +   ++ 
Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVN 607

Query: 822 FIYDWRAKNA 831
            I+  R    
Sbjct: 608 LIFGGRDFKK 617


>gi|39997710|ref|NP_953661.1| preprotein translocase subunit SecF [Geobacter sulfurreducens PCA]
 gi|39984602|gb|AAR35988.1| protein-export membrane protein SecF [Geobacter sulfurreducens PCA]
 gi|298506644|gb|ADI85367.1| protein export membrane protein SecF [Geobacter sulfurreducens
           KN400]
          Length = 302

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 142/303 (46%), Gaps = 5/303 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSIC---LLFTHGLNYGIDFKGGIQLGVLANRP 588
             I       FM  +     IS + ++  +     +     N GIDF GG  + +  ++P
Sbjct: 1   MQIIGKTNFDFMGKKKITFVISSIIALLGLIGVGQIALGTANMGIDFSGGTAVQLNFSQP 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +   R  L      D + Q   G    LV++             +E   +K       
Sbjct: 61  VAIDQARHALAKHGFKDANLQEVSGGNKLLVKVGKATHVQGPAADAIEDAFRK-EFTDNR 119

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I+++  +GP I  +L +  +V V+IS + ++IYI  RF + F +GA+   + D+    
Sbjct: 120 FVIESSTEIGPAIGDKLRKDTLVAVVISLVGIVIYIAWRFDFAFGVGALAATLHDVLAMF 179

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F +   E NL  + AVLT+ GYS+ D VVV+DR+R+N+       S   + + SINE 
Sbjct: 180 AVFFVMQKEINLLFITAVLTIAGYSLTDTVVVFDRIRENLHKNVK-DSLTAICNFSINEV 238

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ T++  F++   +  +GG VI  FA  +  GI+V   SS+F+A+PI++       
Sbjct: 239 LSRTIITALTTFLATASLFFFGGEVIHDFAFALLVGIIVGVYSSVFVASPIVVIWGSRNK 298

Query: 829 KNA 831
           +  
Sbjct: 299 ETK 301


>gi|330894477|gb|EGH27138.1| preprotein translocase subunit SecD [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 622

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 166/539 (30%), Positives = 275/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + LF++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+ VD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMGVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 92/250 (36%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G  V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMGVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  IL   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|15599016|ref|NP_252510.1| preprotein translocase subunit SecD [Pseudomonas aeruginosa PAO1]
 gi|218889895|ref|YP_002438759.1| preprotein translocase subunit SecD [Pseudomonas aeruginosa LESB58]
 gi|254242512|ref|ZP_04935834.1| secretion protein SecD [Pseudomonas aeruginosa 2192]
 gi|81540195|sp|Q9HXI1|SECD_PSEAE RecName: Full=Protein-export membrane protein secD
 gi|9949995|gb|AAG07208.1|AE004799_14 secretion protein SecD [Pseudomonas aeruginosa PAO1]
 gi|126195890|gb|EAZ59953.1| secretion protein SecD [Pseudomonas aeruginosa 2192]
 gi|218770118|emb|CAW25880.1| secretion protein SecD [Pseudomonas aeruginosa LESB58]
          Length = 620

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 165/526 (31%), Positives = 279/526 (53%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K   + + LGLDL GG H +LEVD D  V+  L++Y  E++S L+KE +
Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+      I L F DS   +     +    +        D +         + + + 
Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFR--------DFEVVPEERNGLQVLRVA 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G+SE  +QR G++RI+++LPG QD +  +++L
Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F      ++ K       F          +E  V I+G  +  A+A+FD    
Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299
           +P V+I  D  G       TR+N+G+ +                               +
Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            + + +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+IV+Y  +G++A  ++  N+++ +AL+S+LGATLTLP IAG
Sbjct: 455 NIAKGIDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     SV  ++  GF+RA++ I D+N+T+L+   +L+ 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I+ SMFTAI + RAM+  I   +  K + I
Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI 620



 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 92/250 (36%), Gaps = 5/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G           +  +
Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I + +++ F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIYRF-FGVIATVALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   +   ++ G    L  +A ++  +G +V+  V+++ R+R+ +      +S +  I
Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820
            +  N      +  ++ + +    +   G   +  FA+ M+ GI+ +  ++I +   ++ 
Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVN 607

Query: 821 LFIYDWRAKN 830
           L       K 
Sbjct: 608 LIFGGRDFKK 617


>gi|242309304|ref|ZP_04808459.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239524345|gb|EEQ64211.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 323

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 168/304 (55%), Gaps = 4/304 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                      F++   +G+ +S +  + S+ L F  G   G+DF GG  + +       
Sbjct: 1   MEFFRHNKIYDFVKWSNYGIILSAILFVGSLFLFFKPGFTLGVDFAGGTIVQIQYKEIAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +R  LES++    +  +  G    ++        +V Q    E+   ++ +      
Sbjct: 61  LAQIREKLESVESYKGAQVSEFGSPQEILIRLSVATSNVNQNIGEEI--AELLKDTGDLQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  ++VGPK+  EL  KGI+ + ++ I++++Y+  R++W FAL +I  L+ D+    G 
Sbjct: 119 IRRVDVVGPKVGNELKEKGILALTLALISIMVYVAYRYEWRFALASILALVHDVVIAAGA 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF ++ +L  +AA+LTLIGYS+ND ++++DR+R+ M +  ++   + +++++++ TL 
Sbjct: 179 VILFDVDLSLEVIAALLTLIGYSINDTIIIFDRIRETMSVKASN-DLKAVVNEALSATLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY-DWRAK 829
           R++ TS+  F  VL + ++GG +I  F++PM  G +V + SSIF+A+ +++ +  D +  
Sbjct: 238 RTMLTSLTVFFVVLTLYLFGGEIIKGFSLPMLVGSIVGSYSSIFVASKLVMLLGFDLKKY 297

Query: 830 NARI 833
           + ++
Sbjct: 298 HQKL 301


>gi|167847219|ref|ZP_02472727.1| preprotein translocase subunit SecD [Burkholderia pseudomallei
           B7210]
          Length = 622

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|167837805|ref|ZP_02464688.1| preprotein translocase subunit SecD [Burkholderia thailandensis
           MSMB43]
          Length = 618

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 163/499 (32%), Positives = 267/499 (53%), Gaps = 16/499 (3%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           QS   R+ +A+    + LGLDLRGG H +L+VD    +   L   + + R+ L+ +GI  
Sbjct: 104 QSASPRWLTALRALPMYLGLDLRGGVHFLLQVDMTGALTKKLDSDASDARTQLRDKGIRD 163

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             + ++   +  +FAD    E     +   +  +                   ++    +
Sbjct: 164 GGVARVDQTVVANFADQDTAEQARTLLASSVSELQWATQPG--------GGGYQVVGTFT 215

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                 V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++LPG QD ++ + ++G 
Sbjct: 216 PAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVELPGVQDTAKAKDIIGR 275

Query: 209 TAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           TA +      P     N       G       +    L++ +V  +G  +  A+A FD  
Sbjct: 276 TATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIFTGDRIIDASAGFDEH 335

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQAIPSGKAQISG 321
             +P V+I  D  G R    V+R+NIGKP+A+VL  +    +      Q+    + QI+G
Sbjct: 336 Q-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTVATIQSELGDRFQITG 394

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
             T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  +++ G V I +FMI 
Sbjct: 395 QPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAITVFMIA 454

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+A+DSN+L+NERIREE
Sbjct: 455 YYMLFGVVSVLGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERIREE 514

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR FAI   L IL SMF
Sbjct: 515 LRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLGILTSMF 574

Query: 502 TAISIVRAMMIFIIRYKKM 520
           +A+   R ++      +K 
Sbjct: 575 SAVFFSRGLVNLWYGGRKK 593



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAITVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLIAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|107103341|ref|ZP_01367259.1| hypothetical protein PaerPA_01004410 [Pseudomonas aeruginosa PACS2]
          Length = 620

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 165/526 (31%), Positives = 279/526 (53%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K   + + LGLDL GG H +LEVD D  V+  L++Y  E++S L+KE +
Sbjct: 105 NLAQTTPEWLRKLGGSPMKLGLDLSGGVHFLLEVDMDKAVDARLKVYESEVKSLLRKERV 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+      I L F DS   +     +    +        D +         + + + 
Sbjct: 165 RYRSLPIQDRAIQLGFTDSESLDKARSLIAKDFR--------DFEVVPEERNGLQVLRVA 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G+SE  +QR G++RI+++LPG QD +  +++L
Sbjct: 217 LTQAKLAEIREYSIKQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F      ++ K       F          +E  V I+G  +  A+A+FD    
Sbjct: 277 GKTANLEFRLAAEPDALKSATETFEFREPRRP-PVPLERGVIITGDQVTDASASFDENG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299
           +P V+I  D  G       TR+N+G+ +                               +
Sbjct: 335 RPQVNIRLDGHGGELMNRATRNNVGRSMAVVFIEQKPVTRYTKQMVDGVEKEVAVPAFKE 394

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            + + +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKQIISLATIQSPLGNQFRITGLDGPGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+IV+Y  +G++A  ++  N+++ +AL+S+LGATLTLP IAG
Sbjct: 455 NIAKGIDASLWGMLFVSLFIIVIYRFFGVIATVALAFNMVMLVALMSILGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     SV  ++  GF+RA++ I D+N+T+L+   +L+ 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREELANGMSVQRAIHEGFNRAFTAILDANLTSLLVGGILYA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I+ SMFTAI + RAM+  I   +  K + I
Sbjct: 575 MGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVNLIFGGRDFKKLWI 620



 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G           +  +
Sbjct: 372 VTRYTKQMVDGVEKEVAVPAFKEEKQIISLATIQSPLGNQFRITGLDGPGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I + +++ F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNIAKGIDASLWGMLFVSLFIIVIYRF-FGVIATVALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   +   ++ G    L  +A ++  +G +V+  V+++ R+R+ +      +S +  I
Sbjct: 491 FNMVMLVALMSILGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELA---NGMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +  N      +  ++ + +    +   G   +  FA+ M+ GI+ +  ++I +   ++ 
Sbjct: 548 HEGFNRAFTAILDANLTSLLVGGILYAMGTGPVKGFAVTMSLGIITSMFTAIMVTRAMVN 607

Query: 822 FIYDWRAKNA 831
            I+  R    
Sbjct: 608 LIFGGRDFKK 617


>gi|298291857|ref|YP_003693796.1| protein-export membrane protein SecF [Starkeya novella DSM 506]
 gi|296928368|gb|ADH89177.1| protein-export membrane protein SecF [Starkeya novella DSM 506]
          Length = 319

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 117/299 (39%), Positives = 187/299 (62%), Gaps = 6/299 (2%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    ++PD     FMR R     IS + SI ++    T GLN+GIDFKGG  L V    
Sbjct: 1   MRLLRIVPDDTNFDFMRFRRISFPISAVLSIVALVAFLTLGLNFGIDFKGGTLLEVRYPN 60

Query: 588 PV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              ++  VRS LE+L++G++  Q   G+   L+R+  QPG   AQ  V+  V+  +    
Sbjct: 61  NTLNIGDVRSKLEALELGEVQIQEIGGDGEVLIRVAQQPGGEQAQQAVVGKVRTAL---G 117

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                +  E+VGP++S+EL+  GIVG++++   +LIY+W RF+W FALGA      DI  
Sbjct: 118 EGVEYRRVEVVGPRVSQELLSYGIVGLMLAVFCILIYLWFRFEWQFALGASIANFHDIVL 177

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+GF ++F I+F+LT+VAA+LT++GYS+ND +V+YDR+R+ ++ Y   +   +L++ SIN
Sbjct: 178 TIGFMSIFQIDFDLTSVAALLTILGYSLNDTIVIYDRIREMLRRY-KKMPTDELLNHSIN 236

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824
            TL RSV T +   +++L + ++GG  I SF++ M FG ++V   +SIFIA+P+L+++ 
Sbjct: 237 STLSRSVITHVTVTLALLALVLFGGRAIHSFSVTMMFGVVLVGTYTSIFIASPLLIYLG 295


>gi|187477346|ref|YP_785370.1| preprotein translocase subunit SecF [Bordetella avium 197N]
 gi|115421932|emb|CAJ48452.1| protein-export membrane protein [Bordetella avium 197N]
          Length = 311

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 153/302 (50%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  I ++  + T G +  I+F GG  + V   +   
Sbjct: 1   MEFFRIHRTIPFMRHALVLNIISLVTFIAAVFFIITRGFHLSIEFTGGTVMEVSYAQTAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  +  L   D   QNF   ++ ++RL    G + A     E V   +        
Sbjct: 61  LDQVRGVVGKLGYTDFQVQNFGTSRDVMIRLPVSAGQTSATQS--ETVLAALKAADNSVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL+  G++ ++   + ++IY+ IRF+W FAL  +   + D+   LGF
Sbjct: 119 LRRVEFVGPQVGQELLNNGLMALLFVVVGIMIYLGIRFEWKFALAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +A VL ++GYSVN+ VV+ DR+R+N + Y       ++I+ +I +T+ 
Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKYRK-ADVHEVINSAITQTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI     SS+F+AA + ++    R   
Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPSLHYFALALTIGIWFGIYSSVFVAAALAMWFGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299



 Score = 45.1 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 93/196 (47%), Gaps = 5/196 (2%)

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GK 385
                  +    +    + +     VG  +G + +  G  A++  +V I++++ + +  K
Sbjct: 100 ATQSETVLAALKAADNSVELRRVEFVGPQVGQELLNNGLMALLFVVVGIMIYLGIRFEWK 159

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
           + L    +   +V++ L   +      +L  +AG++  +G +V+ ++++ +RIRE  RK 
Sbjct: 160 FALAGVIANLHDVVIILGFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKY 219

Query: 446 Q--SVFCSLDMGFSRAYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           +   V   ++   ++  S TI     T ++   +LFF GG ++  FA+ + + I   +++
Sbjct: 220 RKADVHEVINSAITQTISRTIITHGSTQMMVLAMLFF-GGPSLHYFALALTIGIWFGIYS 278

Query: 503 AISIVRAMMIFIIRYK 518
           ++ +  A+ ++    +
Sbjct: 279 SVFVAAALAMWFGVKR 294


>gi|262402873|ref|ZP_06079434.1| protein-export membrane protein SecD [Vibrio sp. RC586]
 gi|262351655|gb|EEZ00788.1| protein-export membrane protein SecD [Vibrio sp. RC586]
          Length = 606

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +       + LGLDLRGG H ++EVD D  +   +    +  R  L+ E I
Sbjct: 93  NLAPSTPNWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVTQQEEAFRGDLRDEKI 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       T     +   
Sbjct: 153 RYRAIRPLPDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSETDGRFVLLAK 204

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 205 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 264

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 265 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 323

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 324 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 383

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 384 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 443

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 444 GIQACIWGMVAVMLFTLLYYRKFGMIANVALMANLVLIIGVMSMIPGATMTLPGIAGIVL 503

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 504 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 563

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 564 GAIKGFAVTLSIGILTSMFTAIIGTRCIVNLMYGGKRINKLSI 606



 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 360 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 419

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTLLYYR-KFGMIANVALMANL 478

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 535

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCIVNLM 595

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 596 YGGKRINK 603


>gi|237747210|ref|ZP_04577690.1| preprotein translocase subunit SecF [Oxalobacter formigenes HOxBLS]
 gi|229378561|gb|EEO28652.1| preprotein translocase subunit SecF [Oxalobacter formigenes HOxBLS]
          Length = 313

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 153/302 (50%), Gaps = 2/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  L+  GL+  ++F GG  + V      D
Sbjct: 1   MEFFRIKKDIPFMRHALIFNIISLITFLAAVFFLWHKGLHLSVEFTGGTVMEVSYKNAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R+ +  L  G+       G     V +       +   +  E V   +    P + 
Sbjct: 61  LDRIRNTVRDLGFGNDFQVQNFGRAQD-VMINLPVQKDLTSAQQSEKVMTALLAQNPDAR 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++  EL   G++ + +  I ++IY+  RF+W +A+ AI   + DI   LGF
Sbjct: 120 LQRVEFVGPQVGDELTHDGLMALAMVVIGIIIYLAFRFEWKYAISAIIANLHDIVIILGF 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ V+++DR+R+N +      S  ++++ +I  T+ 
Sbjct: 180 FAFFEWEFSLSVLAAVLAILGYSVNESVIIFDRIRENFRKMRK-ASVMEIVNHAITSTIS 238

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M ++GG  + +FA+ +  GI     SS+F+AA + +++   R   
Sbjct: 239 RTIITHGSTQLMVLSMLIFGGPTLHNFALALTIGICFGIYSSVFVAAAVAMWLGIKREDL 298

Query: 831 AR 832
            +
Sbjct: 299 VK 300


>gi|124265470|ref|YP_001019474.1| preprotein translocase subunit SecD [Methylibium petroleiphilum
           PM1]
 gi|124258245|gb|ABM93239.1| export membrane protein SecD [Methylibium petroleiphilum PM1]
          Length = 626

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 166/519 (31%), Positives = 276/519 (53%), Gaps = 27/519 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + LL   P +L                + LGLDLRGG H +++VD    +     + 
Sbjct: 105 IVALNLLSRSPTWLRSLHA---------LPMYLGLDLRGGVHFLMQVDMKAALTKRADVL 155

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + ++RS L+ + I    + +  N +T++F D+  +           + V ++   D + +
Sbjct: 156 TGDIRSLLRDKSIRHAGIAREGNTVTIAFRDAATR--------TAARAVLTEPLPDLQWS 207

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                +E  ++  L      +V   AI+Q++  +  RI+++G++E  IQ+ G+ R+++QL
Sbjct: 208 EAARDSEFTLTGSLKAEAARRVQDQAIKQNITTLHNRINELGVAEPVIQQQGADRVVVQL 267

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------DGNQYLVEDK 246
           PG QD ++ + ++G TA +    V  +        G   +           G   +V+ +
Sbjct: 268 PGVQDTAKAKDIIGRTATLELRMVDDSAEAAAAATGSGPVPFGAERYVERGGAALIVKRQ 327

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VL 303
           V ++G  L  A   FD +T +P V ++ D  GAR   +V+RDN+GK +A++L  +    +
Sbjct: 328 VILTGDSLTDAQPGFDGQTQEPAVHLTVDAKGARIMRDVSRDNVGKRMAILLFEKGKGEV 387

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               + +     + QISG  T + A   A +LRAGSL   + IVEER +G  LG+++I K
Sbjct: 388 VTAPVIRGELGSRFQISGRMTTQEASDTALLLRAGSLAAPMEIVEERTIGPSLGAENIDK 447

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  +++ G   I  FM   Y  +G+ +  ++ +N++L +A+LS+L ATLTLP IA I L 
Sbjct: 448 GFNSVIYGFAAIAAFMCAYYLLFGVFSTIALAVNLLLLVAVLSMLQATLTLPGIAAIALT 507

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+A+D+N+L+NER+REE R   S   ++  G+ RA++TIFDSNIT LIA V L  FG G
Sbjct: 508 LGMAIDANVLINERVREELRAGASPQAAIHTGYERAWATIFDSNITTLIAGVALLAFGSG 567

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            VRGFA+   L IL SMF+A+   R ++      +K   
Sbjct: 568 PVRGFAVVHCLGILTSMFSAVLFSRGLVNLWYGRRKKLK 606



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 80/207 (38%), Gaps = 4/207 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  E I KG   VI    A+  ++
Sbjct: 404 SGRMTTQEASDTALLLRAGSLAAPMEIVEERTIGPSLGAENIDKGFNSVIYGFAAIAAFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + +   L +++   +   ++      L  +AA+   +G +++  V++ +R+
Sbjct: 464 CAYY-LLFGVFSTIALAVNLLLLVAVLSMLQATLTLPGIAAIALTLGMAIDANVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I             +++   I+ + +  +G   +  FA+    G
Sbjct: 523 REELRA---GASPQAAIHTGYERAWATIFDSNITTLIAGVALLAFGSGPVRGFAVVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           I+ +  S++  +  ++   Y  R K  
Sbjct: 580 ILTSMFSAVLFSRGLVNLWYGRRKKLK 606



 Score = 40.8 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 25/120 (20%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W   + ++   +GL+  LPNF  ++                           ++V 
Sbjct: 3   RYPWWKYAILAIALLVGLVYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                          +   L+  G+    ++     I   F D+  +    D +   L  
Sbjct: 38  SGKATLKVDATVVPRVEQALQAAGLQADFVQLDGASIKARFRDTDAQIKAKDAIAKALNP 97


>gi|226198382|ref|ZP_03793951.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           Pakistan 9]
 gi|225929565|gb|EEH25583.1| protein-export membrane protein SecD [Burkholderia pseudomallei
           Pakistan 9]
          Length = 665

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 100 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 151 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 206

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 207 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 262

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 263 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 322

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 323 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 381

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 382 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 441

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 442 SVIWGFVAIAVFMIAYYMLFGVVSVLGLLVNLLLLVAVLSLMQATLTLPGIAAIALALGM 501

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 502 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 561

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 562 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 595



 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 89/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 395 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 454

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L++++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 455 IAYY-MLFGVVSVLGLLVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 513

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 514 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 570

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 571 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 599


>gi|167564032|ref|ZP_02356948.1| preprotein translocase subunit SecF [Burkholderia oklahomensis
           EO147]
 gi|167571178|ref|ZP_02364052.1| preprotein translocase subunit SecF [Burkholderia oklahomensis
           C6786]
          Length = 316

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 159/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLVTFLAAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L +L   D   QNF   +N L+RL  + G + AQ    + V   +       T
Sbjct: 61  LEPVRATLGTLGYADAQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMGALKAQSADVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++ +++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 238 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|289208480|ref|YP_003460546.1| protein exporter SecF [Thioalkalivibrio sp. K90mix]
 gi|288944111|gb|ADC71810.1| protein-export membrane protein SecF [Thioalkalivibrio sp. K90mix]
          Length = 315

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 160/297 (53%), Gaps = 1/297 (0%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L      + F+  R   + +S++  + S+ LL T GLN+GIDF GG  + V     V+L
Sbjct: 4   HLNFAESNLDFLGKRKITITVSLILILISVALLATRGLNFGIDFTGGTLVEVGYPEAVEL 63

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R  L          Q F   ++ L+RL     D    T    ++            +
Sbjct: 64  DPIRETLAEGGFAGAQVQTFGTSRDVLIRLPPSEDDDDPATLSNRVLNALQDGGPDDPDL 123

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  E VGP +  EL  +G + +I +   +LIY+ +RF+W F++GA+  LI D+  TLG F
Sbjct: 124 RRVEFVGPAVGEELREQGGLAMIYALAGILIYVAVRFEWRFSIGAVFALIYDVVITLGIF 183

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L  +EF+L  +AAVL +IGYS+ND +VVYDR+R+N ++     +  ++++ ++N+TL R
Sbjct: 184 SLLQLEFDLGVLAAVLAVIGYSLNDTIVVYDRIRENFRILRKKGT-EEVMNIAVNKTLAR 242

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++ TS    + +  +A  GG+ + +F+I +  G++V   SSIFIAA   L +   R 
Sbjct: 243 TIITSTTTLLVLFALAFLGGAALQNFSIALIIGVIVGTYSSIFIAATAALLLGVDRQ 299


>gi|71737751|ref|YP_276144.1| multidrug/solvent transporter [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71558304|gb|AAZ37515.1| multidrug/solvent tranporter [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|320325503|gb|EFW81565.1| multidrug/solvent transporter [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327209|gb|EFW83223.1| multidrug/solvent transporter [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 1044

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    +         F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  V+
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   +   V  S   S   +     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGE 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +        +
Sbjct: 1009 ITAVILAIFWVPLFFVSVSGLFKSKKK 1035


>gi|298488622|ref|ZP_07006652.1| Inner membrane efflux transporter of RND family multidrug efflux
           pump [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298156963|gb|EFH98053.1| Inner membrane efflux transporter of RND family multidrug efflux
           pump [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 1044

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 70/687 (10%), Positives = 184/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    K+        F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  V+
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   +   V  S   S   +     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGE 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +        +
Sbjct: 1009 ITAVILAIFWVPLFFVSVSGLFKSKKK 1035


>gi|66047235|ref|YP_237076.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63257942|gb|AAY39038.1| Hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 1044

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKDAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    +         F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  V+
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V  S   S   S     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSSGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMNEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +        +
Sbjct: 1009 ITAVILAIFWVPLFFVTVSGLFKSKQK 1035


>gi|257462582|ref|ZP_05626992.1| protein translocase subunit secF [Fusobacterium sp. D12]
 gi|317060234|ref|ZP_07924719.1| translocase subunit secF [Fusobacterium sp. D12]
 gi|313685910|gb|EFS22745.1| translocase subunit secF [Fusobacterium sp. D12]
          Length = 313

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 82/284 (28%), Positives = 151/284 (53%), Gaps = 3/284 (1%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           +     +G++++  I S+ + F  GLNYGIDF GG  L +   + V L  +  +L+ +  
Sbjct: 7   KHSKRYLGLALMMVILSLGVFFAKGLNYGIDFSGGNLLQIRYEKEVTLHDINKSLDQI-- 64

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            DI     +  K            +   +   + V     + +    I   + VG  + +
Sbjct: 65  KDIPQIGTNSRKVQTSEDNTVIIRTQEISEEDKKVILNQLKTIGNYQIDKEDKVGASVGK 124

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL    I  + I A+ ++IYI  RF++ FA+GAI  L+ D+   +G  +L   E N   +
Sbjct: 125 ELKTSAIYALGIGAVLIIIYITFRFEFIFAIGAIIALLHDLILAIGCISLLYYEINTPFI 184

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           AA+LT++GYS+ND +VV+DR+R+N+ +   T++S  + + KS+N+ + RS+ TS+    +
Sbjct: 185 AAILTILGYSINDTIVVFDRIRENLKRRGKTNMSIEECLTKSVNQVMIRSINTSVTTLFA 244

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++ + + GG  + +F + +  GI+    SS+FIA P++ F++  
Sbjct: 245 IVAILLLGGDSLRTFIVTLLVGILAGTYSSVFIATPVVYFLHKK 288


>gi|163749707|ref|ZP_02156953.1| protein-export membrane protein SecF [Shewanella benthica KT99]
 gi|161330520|gb|EDQ01478.1| protein-export membrane protein SecF [Shewanella benthica KT99]
          Length = 315

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 169/299 (56%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     + F+R       +S++  I S+  L T G+N+G+DF GGI + +  +   
Sbjct: 1   MFQILSIKGTVNFLRHAVPISILSLILVIASLTSLATKGINWGLDFTGGIVVELEFSSTA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R+ L S +   +  Q+F   ++ + RL  + G        +  + +   ++ P  
Sbjct: 61  NLQALRAELTSEETEGVVVQHFGSSRDVITRLPIKEGVKSETQ--VAQIMEAAIKLDPQV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +  E+VGP+I +EL  +G + V+++ I +LIY+  RF+W  ALGA+T L  D+  TLG
Sbjct: 119 IQKRVEMVGPQIGQELAEQGGLAVLVALICILIYVSFRFEWRLALGAVTALAHDVIITLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  ++F+LT +A +LT++GYS+ND +VV+DR+R+N        S  ++I+ SI +T+
Sbjct: 179 VFSLLQLDFDLTVLAGILTVVGYSLNDTIVVFDRIRENFLKMRKG-SPEEIINISITQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T+    + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296


>gi|218961312|ref|YP_001741087.1| protein-export membrane protein secF, accessory membrane protein
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729969|emb|CAO80881.1| protein-export membrane protein secF, accessory membrane protein
           [Candidatus Cloacamonas acidaminovorans]
          Length = 327

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 98/318 (30%), Positives = 165/318 (51%), Gaps = 18/318 (5%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN----- 586
             I     IQF+++R+W  GISI   + S+C +   GLN+ IDF  GI   V        
Sbjct: 1   MRILKNPNIQFVKSRYWFYGISIALLLISLCGIIFKGLNWSIDFTSGIAATVNLKALDPK 60

Query: 587 -RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ------PGDSVAQTRVLEMVK 639
              V +  +R+ L      +          N   +++ +         +  +T++LE+++
Sbjct: 61  VPAVPIENLRTVLTKNGFPEAEITYIGNPANSTFQIKIKSVGKGTDLSTETRTKLLEIIQ 120

Query: 640 KKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           +   E V    +          VGPK+  EL  +    V+++ IAM+IYIW RF++ F L
Sbjct: 121 QNFPEYVQGRDLNKEVIEEIYEVGPKVGSELRSQAFWAVMLALIAMIIYIWFRFEFTFGL 180

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             I  L  D+   +GFFAL G E  +  +AA+LT++GYS+ND +V++DR+R++MK     
Sbjct: 181 MGILALFHDVFLIVGFFALTGKEITMQIIAALLTIVGYSINDTIVIFDRIREDMKKNRK- 239

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
              + + ++SIN+TL R+V T    F++   + +WGGSVI  FA+ +  GI+    SSIF
Sbjct: 240 DPIQVVFNRSINDTLSRTVITGGTTFLTSACLFLWGGSVIHDFALAICLGILFGTYSSIF 299

Query: 815 IAAPILLFIYDWRAKNAR 832
           +A+ +++ +     K  +
Sbjct: 300 VASNLVIDLNLITHKERK 317


>gi|157803299|ref|YP_001491848.1| preprotein translocase subunit SecF [Rickettsia canadensis str.
           McKiel]
 gi|166977669|sp|A8EXI0|SECF_RICCK RecName: Full=Protein-export membrane protein secF
 gi|157784562|gb|ABV73063.1| protein export protein SecF [Rickettsia canadensis str. McKiel]
          Length = 310

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 173/298 (58%), Gaps = 2/298 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+P+ I   FM  +      SI+ S+ S+  +  +  N+GIDF GGI + V  
Sbjct: 1   MQIYPLRLLPNKIDFDFMNFKKVSYTFSIILSLISVISIGIYKFNFGIDFVGGIVIEVRL 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++  DL  +R  L  L IG++  QNF  E++  +RL     ++     +  +        
Sbjct: 61  DQTPDLPKMRQILGELGIGEVVLQNFGSERDLSIRL-GSSSEANLMENIELIKASLHNNF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 +  + VGP++ R+LI  G + ++ S +A+++YIW+RF+WYF LG +  L+ D+ 
Sbjct: 120 PYKFEYRKVDFVGPQVGRQLIEAGTMAMLFSFLAIMVYIWVRFEWYFGLGILIALMHDLI 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LGF ++  ++ NL+ +AAVLT+IGYSVND VV+YDR+R+N++ Y    +  ++I+ SI
Sbjct: 180 LALGFMSMTKLDCNLSTIAAVLTIIGYSVNDSVVIYDRIRENLRKYYKK-NITEIINLSI 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           NETL R++ T +   ++ L + ++GG  I SF++ + FGI+    SSIFI+APIL   
Sbjct: 239 NETLSRTILTVITTLLANLALILFGGEAIRSFSVLVFFGIIAGTYSSIFISAPILTMF 296


>gi|323499865|ref|ZP_08104824.1| preprotein translocase subunit SecD [Vibrio sinaloensis DSM 21326]
 gi|323315106|gb|EGA68158.1| preprotein translocase subunit SecD [Vibrio sinaloensis DSM 21326]
          Length = 607

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 150/524 (28%), Positives = 277/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L++  I
Sbjct: 93  NLAPATPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREAKI 152

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   ++         +         + + D       +     ++ 
Sbjct: 153 RYRAIRPSGKEGVEVLLRNAEQLAEAEALLK--------QNHPDMIFVDSDSNGRFALTA 204

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 205 TFTEQRLTEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264

Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V  +             G    +D DG   +++ +V + G  +    ++
Sbjct: 265 LGATATLEFREVDASADLAAAANGRAPAGSEIKQDRDGRPVVLKKRVILGGQSITD-ASS 323

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    ++ NIGK +A V                       
Sbjct: 324 SVDEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGRRTPEGKVILSKHEE 383

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 384 VINQATIQSALGRNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A + G+V ++LF ++ Y K+G +A+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 444 MGIQACIWGMVAVMLFTLLYYRKFGFIANMALMANLVLIIGVMSMIPGATMTLPGIAGIV 503

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 504 LTVGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIVGTRCVVNLMYGGKRINKLSI 607



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 90/213 (42%), Gaps = 5/213 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G   A       +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 396 RNFRITGIDSAAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++++  + ++  F   A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMLFTLLYYR-KFGFIANMALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      + +  I +            ++   I+ + +   G   I  FA
Sbjct: 515 LIFERIREELRE---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++ GI+ +  ++I     ++  +Y  +  N 
Sbjct: 572 VTLSIGILTSMFTAIVGTRCVVNLMYGGKRINK 604


>gi|171320044|ref|ZP_02909114.1| protein-export membrane protein SecD [Burkholderia ambifaria MEX-5]
 gi|171094703|gb|EDT39747.1| protein-export membrane protein SecD [Burkholderia ambifaria MEX-5]
          Length = 673

 Score =  208 bits (527), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 159/516 (30%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+   I    + ++   + ++F+D++  E+    +   +  +           
Sbjct: 160 ASDARALLRDRNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLAASVTELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ GS RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKEVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRSVRTVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+++   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608



 Score = 41.2 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +    +   + ++ LD            
Sbjct: 3   RYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQ----VSSGKATVKLD------------ 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                +  L      L S   K     F        I +   D+  +  + D +   L  
Sbjct: 47  -----STTLTQVESALASAQIKPDDITFENTASNANIRVRLKDTDTQLRVKDLLQKSLNA 101


>gi|330957508|gb|EGH57768.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 622

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 166/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVN 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + +F++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                R +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTRQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + I+I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 42.4 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  IL   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALTDA----------GIAVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|21957737|gb|AAM84575.1|AE013703_5 protein secretion, membrane protein [Yersinia pestis KIM 10]
 gi|45435449|gb|AAS61008.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 344

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 168/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   G+S+L  + SI ++ T G N+G+DF GG  + +    
Sbjct: 27  YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLEN 86

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  L++        QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 87  PADLDQLRDTLQNAGFESPILQNFGSSRDVMVRMPPATGT-AGQELGNKIISVINESVDK 145

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + ++++ +++L+Y+  RF+W  ALGA+ +L  D+  T
Sbjct: 146 NASVKRIEFVGPSVGSDLAQAGALALLVALLSILVYVGFRFEWRLALGAVISLAHDVVIT 205

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 206 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 264

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 265 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVTIGTVSSIYVASALALKLGMKR 324

Query: 828 A 828
            
Sbjct: 325 E 325


>gi|288555357|ref|YP_003427292.1| preprotein translocase subunit SecF [Bacillus pseudofirmus OF4]
 gi|288546517|gb|ADC50400.1| preprotein translocase subunit SecF [Bacillus pseudofirmus OF4]
          Length = 314

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 7/305 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I F++ R      S+   +  + LL T GLN GIDF+ G Q+ +LA  P+ 
Sbjct: 1   MSFNFQNREIDFVQHRKKFFTFSLAAMLIGVILLLTMGLNLGIDFESGSQVEILAEEPLT 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              V +    +  G        G     +      G   A                    
Sbjct: 61  AEQVEAEFAQIGSGYTPDDITLGGDRNEMATARFIGVLDASEIAEIQSYF----SENFGA 116

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
             N   V P + +EL R  ++ V+I+++ ++IY+ IRF++ + + AI  L+ D    +  
Sbjct: 117 EPNIGTVSPTVGQELARNALISVLIASVGIIIYVTIRFEFLYGVAAIVALLHDAFFIIAV 176

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINE 767
           F+L  I+ N+  +AAVLT++GYS+ND +V +DR+R+NMKL      F D   +++KS+ +
Sbjct: 177 FSLLQIQVNVPFIAAVLTIVGYSINDTIVTFDRIRENMKLTKRVKDFNDLAAVVNKSLVQ 236

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL RS+ T +    +   + ++GG  I SFA+ +  G+V    SS+F+A+ + L     +
Sbjct: 237 TLARSINTVLTVVFAAAALFIFGGEAIRSFALALLIGLVAGTYSSMFLASQLWLIWKSKQ 296

Query: 828 AKNAR 832
            K  +
Sbjct: 297 LKKQK 301


>gi|221202265|ref|ZP_03575299.1| protein-export membrane protein SecD [Burkholderia multivorans
           CGD2M]
 gi|221209145|ref|ZP_03582138.1| protein-export membrane protein SecD [Burkholderia multivorans
           CGD2]
 gi|221170963|gb|EEE03417.1| protein-export membrane protein SecD [Burkholderia multivorans
           CGD2]
 gi|221177839|gb|EEE10252.1| protein-export membrane protein SecD [Burkholderia multivorans
           CGD2M]
          Length = 673

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 160/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + RS L+ + I    + ++   + ++F+D++  E+    +   +  +           
Sbjct: 160 AADARSLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLASSITELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++  V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQVPVLLKKDVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+++   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  I+   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608



 Score = 41.6 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 29/124 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++                           ++V 
Sbjct: 3   RYPLWKYVVMVVALAIGFLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIADKVTL 117
                         ++ + L    I    +          I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDANTLTQVETALAAAQIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQK 97

Query: 118 FLQG 121
            L  
Sbjct: 98  TLNA 101


>gi|167618753|ref|ZP_02387384.1| preprotein translocase subunit SecD [Burkholderia thailandensis
           Bt4]
          Length = 624

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 164/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  IVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQVPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|255744550|ref|ZP_05418501.1| protein-export membrane protein SecD [Vibrio cholera CIRS 101]
 gi|262161316|ref|ZP_06030427.1| protein-export membrane protein SecD [Vibrio cholerae INDRE 91/1]
 gi|255737581|gb|EET92975.1| protein-export membrane protein SecD [Vibrio cholera CIRS 101]
 gi|262029066|gb|EEY47719.1| protein-export membrane protein SecD [Vibrio cholerae INDRE 91/1]
          Length = 606

 Score =  207 bits (526), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 151/523 (28%), Positives = 276/523 (52%), Gaps = 36/523 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 93  NLAPSTPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       +     +   
Sbjct: 153 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 204

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 205 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 264

Query: 207 GTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D +G   +++ +V + G  +    ++ 
Sbjct: 265 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 323

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 324 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 383

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 384 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 443

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A + G+V ++LF ++ Y K+G++A+ ++  N++L + ++S++  AT+TLP IAGIVL
Sbjct: 444 GIQACIWGMVAVMLFTVLYYRKFGMIANIALMANLVLIIGVMSMIPGATMTLPGIAGIVL 503

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G 
Sbjct: 504 TVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANITTLITAIILFAVGT 563

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 564 GAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI 606



 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 360 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 419

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 478

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 479 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 535

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 595

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 596 YGGKRINK 603


>gi|298486006|ref|ZP_07004080.1| protein-export membrane protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298159483|gb|EFI00530.1| protein-export membrane protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 622

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 167/539 (30%), Positives = 277/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F+D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFSDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + LF++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.5 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/118 (12%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  IL   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYILILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGMGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|85716183|ref|ZP_01047158.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A]
 gi|85697016|gb|EAQ34899.1| SecD/SecF/SecDF export membrane protein [Nitrobacter sp. Nb-311A]
          Length = 346

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 118/307 (38%), Positives = 188/307 (61%), Gaps = 6/307 (1%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
              L    ++PD     F R R     IS + SI +I L FTHGLN+GIDFKGG  L V 
Sbjct: 22  FGLLPSLRIVPDDTHFDFTRFRRISFPISAVLSIVAIALFFTHGLNFGIDFKGGTLLEVQ 81

Query: 585 ANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           A     D++ +R+ L  L +G++  Q F G    L+R+  QPG   AQ   ++ V+  + 
Sbjct: 82  AKSGEADIASMRTTLSKLDLGEVQLQQFGGPTEVLIRVAEQPGGDAAQQAAVQKVRGAL- 140

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   +  E+VGP++S EL+  G+VG++++ + +L+Y+W RF+W FALGA+   + D
Sbjct: 141 --GDSVNYRRVEVVGPRVSGELLAYGMVGLMLAILGILMYLWFRFEWQFALGAMVANVHD 198

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T+GF ++  ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y   +   DL+++
Sbjct: 199 IVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPDLLNE 257

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822
           SIN TL RS+ T     +++L + ++GG  I SF   M FG ++V   +SIFIAAPIL++
Sbjct: 258 SINSTLSRSIITHATVTLALLALLLFGGPAIHSFTAVMTFGVVLVGTYTSIFIAAPILIY 317

Query: 823 IYDWRAK 829
           +     +
Sbjct: 318 LGVGENR 324


>gi|254480060|ref|ZP_05093308.1| protein-export membrane protein SecD [marine gamma proteobacterium
           HTCC2148]
 gi|214039622|gb|EEB80281.1| protein-export membrane protein SecD [marine gamma proteobacterium
           HTCC2148]
          Length = 625

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 156/525 (29%), Positives = 268/525 (51%), Gaps = 37/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    PS +       + LGLDLRGG H  LEVD +  +   ++ Y +  +  L++  I
Sbjct: 107 NLAPTTPSWLSDFGAQPVKLGLDLRGGVHFKLEVDVNAAIERRMEYYLNATKRALREARI 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
             +     + ++   F            +    + + ++ + +   + +       +   
Sbjct: 167 RGYVNVDDKGRLETKFKSES--------LREQARTIIAENHPELVLDRVDEEDSWNLYGA 218

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++     ++  +A+ Q++  +R R++++G+SE  +QR G +RI+++L G QD +  +++L
Sbjct: 219 MADATRKELADYAVSQNLTTLRNRVNELGVSEPLVQRQGQNRIVVELAGIQDTAEAKRIL 278

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-DSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           G  A + F  V    +         +   D  G    +E ++ ++G  +  A A+FD   
Sbjct: 279 GKVANLEFRMVAKLEAASSEKQRFEYRSTDRAGMSEWLERELILTGERVTNAQASFDQNG 338

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301
            +P V IS D  G       TRDNI + +                         V  D +
Sbjct: 339 -QPNVQISLDSEGGLLMNRATRDNIKRRMGVLFIERKYRTHYERGEDGEEVAVKVPYDEK 397

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    + Q+    + QI+G  +   A  LA MLRAG+L   +  VEER VG  LG+++I
Sbjct: 398 KLLTAPVIQSALGAQFQITGLDSPLEASELALMLRAGALAAPITFVEERTVGPSLGAENI 457

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G  ++  GL L+VLFM++ Y  +G+ A  ++  N++L +A +S++GATLTLP IAGIV
Sbjct: 458 RLGVKSVQMGLALVVLFMVLYYRVFGIAAVVALSCNLVLMIAFMSMIGATLTLPGIAGIV 517

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+  RIREE R   S   ++  GF RA +TI D+NIT LI  ++L+  G
Sbjct: 518 LTVGMAVDANVLIFSRIREELRNGMSPQMAIHSGFERAVATILDANITTLIVAIILYAVG 577

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            G V+GFA+T+ + I+ SMFTAI   RA++  I   ++++ + I 
Sbjct: 578 TGPVKGFAVTLSVGIVTSMFTAILGTRALINLIYGGRRVEKLSIG 622



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 97/256 (37%), Gaps = 5/256 (1%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
              G + +        +       +      D             +  Q+Q     +   
Sbjct: 364 RRMGVLFIERKYRTHYERGEDGEEVAVKVPYDEKKLLTAPVIQSALGAQFQITGLDSPLE 423

Query: 634 VLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             E  +  +   +    T      VGP +  E IR G+  V +    +++++ + ++  F
Sbjct: 424 ASELALMLRAGALAAPITFVEERTVGPSLGAENIRLGVKSVQMGLALVVLFMVLYYRV-F 482

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            + A+  L  ++   + F ++ G    L  +A ++  +G +V+  V+++ R+R+ ++   
Sbjct: 483 GIAAVVALSCNLVLMIAFMSMIGATLTLPGIAGIVLTVGMAVDANVLIFSRIREELR--- 539

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
             +S +  I       +   +  ++   I  + +   G   +  FA+ ++ GIV +  ++
Sbjct: 540 NGMSPQMAIHSGFERAVATILDANITTLIVAIILYAVGTGPVKGFAVTLSVGIVTSMFTA 599

Query: 813 IFIAAPILLFIYDWRA 828
           I     ++  IY  R 
Sbjct: 600 ILGTRALINLIYGGRR 615


>gi|330965897|gb|EGH66157.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 622

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 166/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + +F++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIASGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 94/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + I+I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +    + ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---SGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.5 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALTDA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|291301294|ref|YP_003512572.1| protein-export membrane protein SecF [Stackebrandtia nassauensis
           DSM 44728]
 gi|290570514|gb|ADD43479.1| protein-export membrane protein SecF [Stackebrandtia nassauensis
           DSM 44728]
          Length = 416

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 138/305 (45%), Gaps = 16/305 (5%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT----HGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + F++ R    GIS++  + S+  L      + +N+GI+F GG Q        V L+ 
Sbjct: 27  TTVDFIKRRLLWYGISLVLMLVSLSGLGLAIGSNHMNWGIEFVGGTQFQGAVKEGVSLTE 86

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V + +E+  +  ++ Q      +  V ++ +   +  Q  + E +   +          +
Sbjct: 87  VEAAVEADGVEVVTAQTAGTGDDATVVVRTESLPNKEQQEIQEAMSAALGGEEV-----S 141

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              V       +  K    + +S   ++ Y+W R++   A+ AI  LI D+  T G +A+
Sbjct: 142 ISNVSESWGASVSTKAYWALGVSLALIMGYLWWRYERKMAIAAILALIHDLILTAGIYAI 201

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGR 771
            G E   + V  +LT++GYS+ D VVV+D++ +N +  L     ++ +  + +IN+TL R
Sbjct: 202 VGFEITPSTVIGMLTILGYSLYDTVVVFDKVHENTRGVLSQQRYTYGESANLAINQTLMR 261

Query: 772 SVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           S+ T++   + V  +        G   +   A+ +  G+   A SS+F+A P+++     
Sbjct: 262 SINTTLIGLLPVGGLLFVGAGLLGVGTLKDLALVLFVGMATGAYSSLFLATPLVVDFKLR 321

Query: 827 RAKNA 831
                
Sbjct: 322 EKDYK 326


>gi|254243524|ref|ZP_04936846.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexB [Pseudomonas aeruginosa 2192]
 gi|126196902|gb|EAZ60965.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexB [Pseudomonas aeruginosa 2192]
          Length = 1046

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 182/686 (26%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++P+  P               +      
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +              +  IT++F      +    +V   LQ 
Sbjct: 54  AETVQDTVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++             + S  I+    D +  ++   
Sbjct: 114 ATPLLPQEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP++L     T   +S               G            
Sbjct: 174 DFQVFGSQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQIVQISSGQLGGLPAVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++G          
Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      A L          +           S   
Sbjct: 280 QFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L++  ++ + ++ T  +L+  G      ++ G+V
Sbjct: 340 VVKTLGEAILLVFLVMYLFLQNFRATLISTIAVPVVLLGTFGVLAAFGLLDHTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            LS        +A        + +   ++ +                + +G +   V   
Sbjct: 520 FLSTTHGYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++S++   +  ++      F V      G   +      M+K       
Sbjct: 580 PGSSAERTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++                  +  
Sbjct: 640 GENSVFELAKRAQMHFFSFKDAMVFA 665



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q   I+ Q      + +        +++   + +      +   +
Sbjct: 258 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I + +  +  + + + + +++  + +   L +   + + + 
Sbjct: 318 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLISTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG+  +   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGVLAAFGLLDHTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      LPMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 492



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +          + G    + ++G     +  +  PG S            K 
Sbjct: 790  VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W      +  + L
Sbjct: 850  LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L   ++ G+  ++     +LT IG S  + +++ +  ++   L+       +   
Sbjct: 907  GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 963

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++    L   V TS+A  + V+P+A+    G     +    +  G+V A   +IF
Sbjct: 964  EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1018


>gi|330987791|gb|EGH85894.1| multidrug/solvent transporter [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 1044

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    +         F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  V+
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   +   V  S   S   +     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGE 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +        +
Sbjct: 1009 ITAVILAIFWVPLFFVSVSGLFKSKKK 1035


>gi|107021796|ref|YP_620123.1| preprotein translocase subunit SecD [Burkholderia cenocepacia AU
           1054]
 gi|116688743|ref|YP_834366.1| preprotein translocase subunit SecD [Burkholderia cenocepacia
           HI2424]
 gi|254246282|ref|ZP_04939603.1| SecD/SecF/SecDF export membrane protein [Burkholderia cenocepacia
           PC184]
 gi|105891985|gb|ABF75150.1| protein-export membrane protein SecD [Burkholderia cenocepacia AU
           1054]
 gi|116646832|gb|ABK07473.1| protein-export membrane protein SecD [Burkholderia cenocepacia
           HI2424]
 gi|124871058|gb|EAY62774.1| SecD/SecF/SecDF export membrane protein [Burkholderia cenocepacia
           PC184]
          Length = 673

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 162/516 (31%), Positives = 269/516 (52%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + RS L+ + I    + +++  + ++F+D++  E+    +   +  +           
Sbjct: 160 ASDARSLLRDKNIRDGGVSRVEQSVVVNFSDAQTAEDARKVLAASITELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ GS RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++  V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKDVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 29/124 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IGLL  LPNF  ++                           ++V 
Sbjct: 3   RYPLWKYVVMVVALAIGLLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ----NKITLSFADSRFKENIADKVTL 117
                         ++ S L    I    +          I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDSTTLTQVESALASAQIKPDDVTFENTATSANIRVRLKDTDTQLRVKDLLQK 97

Query: 118 FLQG 121
            L  
Sbjct: 98  SLNA 101


>gi|289648231|ref|ZP_06479574.1| multidrug/solvent tranporter [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 1011

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 70/687 (10%), Positives = 184/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    K+        F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  V+
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 81/243 (33%), Gaps = 13/243 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   +   V  S   S   +     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTSAPGYSSGE 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVA 808
            + A
Sbjct: 1009 ITA 1011


>gi|51103033|gb|AAT96179.1| SecD [Pseudomonas viridiflava]
          Length = 622

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 163/521 (31%), Positives = 271/521 (52%), Gaps = 40/521 (7%)

Query: 35  FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
            P+ +       + LGLDL GG H +LEVD D  ++  L++Y  E+++ L+KE +   S+
Sbjct: 112 TPNWLRNVGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL 171

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
            Q+ N I L F D   +E     V             +     ++        + L+   
Sbjct: 172 PQLGNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTPAK 223

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++LG TA 
Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F      +        +   R+       VE  + I+G  +  A A+FD    +P V+
Sbjct: 284 LEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVN 341

Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304
           I+ D  G       TR N+G+ +                               + + + 
Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVNGVEKDVPVQTFKEDKKII 401

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D+I KG
Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             A + G++ + LF++ +Y  +GL+A  ++  N+++ LAL+SLLGATLTLP IAGIVL +
Sbjct: 462 VDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTM 521

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+  RIREE     +V  ++  GF RAY+ I D+N+T L+   +LF  G G 
Sbjct: 522 GMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 91/250 (36%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                R +   V +         D    +    ++ L       G +         +  +
Sbjct: 374 TTTYTRQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KG+   +   + + ++I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 FNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 SEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVT-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALTDA----------GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|289677853|ref|ZP_06498743.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 1044

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 70/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    +         F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  D   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPDEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  V+
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V  S   S   S     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSSGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMNEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +        +
Sbjct: 1009 ITAVILAIFWVPLFFVTVSGLFKSKQK 1035


>gi|160896286|ref|YP_001561868.1| preprotein translocase subunit SecF [Delftia acidovorans SPH-1]
 gi|160361870|gb|ABX33483.1| protein-export membrane protein SecF [Delftia acidovorans SPH-1]
          Length = 316

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 160/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS +    ++  L T GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIRKDIPFMKYALVLNAISFITFALAVFFLLTRGLHLSVEFTGGTVMEVAYTQTAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ VR  +  L   D++ QNF   ++ ++RL  Q   S AQ    E V   + +     T
Sbjct: 61  IAKVRDTVSKLGYSDVTVQNFGTSRDVMIRLPVQKDVSSAQQS--EQVLTALKKEDAEVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL+  G++ +    + ++IY+ +RF+W F + A+   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGDELMHNGLMALGFVVLGIVIYLAMRFEWKFGVAAVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +A VL ++GYSVN+ VV++DR+R+  + +   +S  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRK-LSTTEVIDHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +    VL M  +GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|66044478|ref|YP_234319.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255185|gb|AAY36281.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Pseudomonas syringae pv. syringae B728a]
          Length = 622

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 166/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKSFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVD 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + +F++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                R +   V +         D    +    ++ L       G +         +  +
Sbjct: 374 TTTYTRQMVDGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + I+I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|170703130|ref|ZP_02893946.1| protein-export membrane protein SecD [Burkholderia ambifaria
           IOP40-10]
 gi|170131963|gb|EDT00475.1| protein-export membrane protein SecD [Burkholderia ambifaria
           IOP40-10]
          Length = 673

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 160/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+   I    + ++   + ++F+D++  E+    +   +  +           
Sbjct: 160 ASDARALLRDRNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLAASVTELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ GS RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKEVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRSVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+++   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQVAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606



 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQVAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608



 Score = 41.2 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +    +   + ++ LD            
Sbjct: 3   RYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQ----VSSGKATVKLD------------ 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                +  L      L S   K     F        I +   D+  +  + D +   L  
Sbjct: 47  -----STTLTQVESALASAQIKPDDITFENTASNANIRVRLKDTDTQLRVKDLLQKSLNA 101


>gi|237800022|ref|ZP_04588483.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331022877|gb|EGI02934.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 622

 Score =  207 bits (526), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 166/539 (30%), Positives = 276/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNAIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + +F++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + I+I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.9 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|307259394|ref|ZP_07541119.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306866330|gb|EFM98193.1| Protein-export membrane protein secD [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 556

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 163/523 (31%), Positives = 280/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 45  NLAPATPTWLTDIGGNPMKRGLDLRGGVRFLMEVDMNTALAKQQENLQDSLRTELRKEKL 104

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD          +      V++ L         ++ +  E  +
Sbjct: 105 QYKAVKKGENFATVIEFADEETANKAIRYIR----RVHTALEAASISPTEISFSPSETGL 160

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V S          AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 161 VTS-------RDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 213

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DGN  ++  K  + G H+     +
Sbjct: 214 LGATATLEFRLVNAEASPESAARGIVPADSEIQYTRDGNPVVLRRKPSLGGEHIID-ATS 272

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     ++T+  +GKP+A +                       
Sbjct: 273 GKDERGLPQVSINLDAEGGTMMADITKSAVGKPMATLYSEFKDSGRKDANGKVILEKHEE 332

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 333 VINVATINSRLGSQFQITGIDSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 392

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +G+ A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 393 KGMEAGMYGLILTIAFCLIYYKMFGVFAATALTANMVLTIGLMSLIGATLTMPGIAGIVL 452

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 453 AVGMSVDANVLIYERIKEELRNGRSIQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 512

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 513 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 555



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F + A T L  ++  T+G  +L G
Sbjct: 381 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKM-FGVFAATALTANMVLTIGLMSLIG 439

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 440 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSIQQAIHEGYNGAFTSIFDS 496

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 497 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 554


>gi|221214469|ref|ZP_03587440.1| protein-export membrane protein SecD [Burkholderia multivorans
           CGD1]
 gi|221165726|gb|EED98201.1| protein-export membrane protein SecD [Burkholderia multivorans
           CGD1]
          Length = 673

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 160/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + RS L+ + I    + ++   + ++F+D++  E+    +   +  +           
Sbjct: 160 AADARSLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLASSITELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++  V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQVPVLLKKDVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+++   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  I+   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608



 Score = 41.6 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 29/124 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++                           ++V 
Sbjct: 3   RYPLWKYVVMVVALAIGFLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIADKVTL 117
                         ++ + L    I    +          I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDANTLTQVETALAAAQIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQK 97

Query: 118 FLQG 121
            L  
Sbjct: 98  TLNA 101


>gi|167721141|ref|ZP_02404377.1| preprotein translocase subunit SecD [Burkholderia pseudomallei
           DM98]
          Length = 616

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|161525835|ref|YP_001580847.1| preprotein translocase subunit SecD [Burkholderia multivorans ATCC
           17616]
 gi|189349444|ref|YP_001945072.1| preprotein translocase subunit SecD [Burkholderia multivorans ATCC
           17616]
 gi|160343264|gb|ABX16350.1| protein-export membrane protein SecD [Burkholderia multivorans ATCC
           17616]
 gi|189333466|dbj|BAG42536.1| preprotein translocase SecD subunit [Burkholderia multivorans ATCC
           17616]
          Length = 673

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 160/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + RS L+ + I    + ++   + ++F+D++  E+    +   +  +           
Sbjct: 160 AADARSLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLASSITELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++  V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQVPVLLKKDVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+++   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGSRKKLK 606



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  I+   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGSRKKLKSL 608



 Score = 41.6 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 16/124 (12%), Positives = 32/124 (25%), Gaps = 29/124 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++                           ++V 
Sbjct: 3   RYPLWKYVVMVVALAIGFLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIADKVTL 117
                         ++ + L    I    +          I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDANTLTQVETALAAAQIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQK 97

Query: 118 FLQG 121
            L  
Sbjct: 98  TLNA 101


>gi|257094093|ref|YP_003167734.1| preprotein translocase subunit SecF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257046617|gb|ACV35805.1| protein-export membrane protein SecF [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 314

 Score =  207 bits (526), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 165/302 (54%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS+L  + ++  LF+ GL+  ++F GG  + +  ++  +
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVISLLTFLLAVFFLFSRGLHLSVEFTGGTLIELNYSQAAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  L      D S QNF   ++ L+RL  +       TR+ E V + +    P ++
Sbjct: 61  LEKLREGLGKAGYSDFSVQNFGSSQDVLIRLPLRA--DQNTTRIGESVLQALNAETPGAS 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL   G + +++  I +++Y+  RF+W F++ AI   + D+   LGF
Sbjct: 119 LRRVEFVGPQVGKELAENGALALLLVVIGIVVYLAFRFEWRFSVSAIIANLHDVIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VVV+DR+R+  +     ++   ++D +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVVFDRVRETFRK-VRGLTTPQVLDHAITSTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M ++GG  +  FA+ +  GI     SS+ +A+P+++++   R + 
Sbjct: 238 RTIITHGSTQMMVLSMLLFGGETLYYFALALTIGICFGIYSSVLVASPLVMWLGVSREQF 297

Query: 831 AR 832
            R
Sbjct: 298 VR 299


>gi|78065284|ref|YP_368053.1| preprotein translocase subunit SecD [Burkholderia sp. 383]
 gi|77966029|gb|ABB07409.1| SecD export membrane protein [Burkholderia sp. 383]
          Length = 674

 Score =  207 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 159/516 (30%), Positives = 269/516 (52%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ + I    + ++   + ++F+D++  E+    + L +  +           
Sbjct: 160 ASDARTLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLALSITELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ GS RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKEVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A F     +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGF-DDHQRPSVNIRLDSAGGRSVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+D+N+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDANVLINERVREELRAGQPPQTAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDANVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQTAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  I+   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608


>gi|317052998|ref|YP_004119352.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. At-9b]
 gi|316953325|gb|ADU72796.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. At-9b]
          Length = 1046

 Score =  207 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 189/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +  L     +  ++++P   P             + + +    
Sbjct: 8   RPIFAWVLAIIVMLAGGISIL-----KLPVEQYPDVAP-------------TSVQIRATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  LQ      +   +    G+   S     +   ++TLSF +    +    +V  
Sbjct: 50  PGADATTLQNSVTQVIEQNMSGLDGLMYMSSTSDSSGTLQLTLSFENGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +       +  ++     D       + +  +     D I   
Sbjct: 110 KLQLATPLLPQEVQQQGITVRKSSSVFFLVPGFVDDTGRMSMEDIADYVAANLKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +       N        G        
Sbjct: 170 NGVGDTTLFGSQ-YAMRIWLDPNKLNNYQLTPVDVMNMIETQNAQIAAGQLGGAPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I +     
Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGNILLKVNSDGSQVRLHDVARIERGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +     +       A  +   T          L+         +           
Sbjct: 276 NFVVKINGKPASALGIQLAAGANALDTANAIRAKIDELKPYFPQGLKVVYPYDTTPFISI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SIHEVVKTLFEAIVLVFLVMYLFLQSFRATLIPTIAVPVVLLGTFGILAAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLKPKAATRKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+ + I                   
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVLVALILTPALCVTILKPVKPGSHGQHRGLFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + +A    R+  + +   +L +  ++  +         + +G +    
Sbjct: 516 NRKFDQSAHHYTNSVARMLHRSGRYLLIYGVLVAGMAVLFMRLPTSFLPSEDQGVLATQA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +          ++ L+ +    +  +  + E    V      G           +K    
Sbjct: 576 ILPAGATQERTQAVLDQVNDYYLKNEKNNVENVLTVNGFGFAGRGQNVGIAFIGLKDWSQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +        K    ++   +V 
Sbjct: 636 RPGEENKVDGIVSRAAKAFSNIMDGNVVA 664



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 80/203 (39%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    ++ +K    + + +    +T         E+++     +++  + M +++ 
Sbjct: 301 DTANAIRAKIDELKPYFPQGLKVVYPYDTTPFISISIHEVVKTLFEAIVLVFLVMYLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G  A FG   N   +  ++  IG  V+D +VV + + 
Sbjct: 361 ---SFRATLIPTIAVPVVLLGTFGILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +  +    KS+ +  G  V  ++      +PMA +GGS       F+I + 
Sbjct: 417 -ERVMAEEGLKPKAATRKSMGQIQGALVGIALVLSAVFVPMAFFGGSTGVIYRQFSITIV 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             +V++   ++ +   + + I  
Sbjct: 476 SAMVLSVLVALILTPALCVTILK 498



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 70/194 (36%), Gaps = 7/194 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G   A     E +         L      +  G      +  +    +  +S I + + +
Sbjct: 828  GQPAAGKSSGEAMALMEQLAKQLPPGVGYDWTGMSYQERMTGEQAPALYALSLIVVFLCL 887

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L    L G+  ++  V  +LT IG S  + +++ + 
Sbjct: 888  AALYESWSIPFSVMLVVPLGVFGALVATLLRGLNNDVYFVVGLLTTIGLSAKNAILIVEF 947

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  ++         +   ++    L   + TS+A  + VLP+A+    G     +    
Sbjct: 948  AKDQIEKEGKG--VVEATLEAARMRLRPILMTSLAFILGVLPLALSSGAGSGAQNAVGTG 1005

Query: 801  MAFGIVVAASSSIF 814
            +  G+V A   +I+
Sbjct: 1006 VIGGMVAATLLAIY 1019


>gi|51102889|gb|AAT96039.1| SecD [Pseudomonas viridiflava]
 gi|51102918|gb|AAT96067.1| SecD [Pseudomonas viridiflava]
 gi|51102972|gb|AAT96119.1| SecD [Pseudomonas viridiflava]
          Length = 622

 Score =  207 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 163/521 (31%), Positives = 271/521 (52%), Gaps = 40/521 (7%)

Query: 35  FPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
            P+ +       + LGLDL GG H +LEVD D  ++  L++Y  E+++ L+KE +   S+
Sbjct: 112 TPNWLRNIGATPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKALLRKEKVRYRSL 171

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
            Q+ N I L F D   +E     V             +     ++        + L+   
Sbjct: 172 PQLGNVIQLGFGDDAEREQARALVRKTFTDFE-ITPAELNGIPVLR-------MALTPAK 223

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++LG TA 
Sbjct: 224 LAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 283

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F      +        +   R+       VE  + I+G  +  A A+FD    +P V+
Sbjct: 284 LEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQVTDAKASFDEHG-RPQVN 341

Query: 272 ISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLDGRVLT 304
           I+ D  G       TR N+G+ +                               + + + 
Sbjct: 342 INLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTFTKQMVNGVEKDVPVQTFKEDKKII 401

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D+I KG
Sbjct: 402 SLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKG 461

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             A + G++ + LF++ +Y  +GL+A  ++  N+++ LAL+SLLGATLTLP IAGIVL +
Sbjct: 462 VDASLWGMLFVSLFIMAIYRFFGLIATVALAFNMVMLLALMSLLGATLTLPGIAGIVLTM 521

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+  RIREE     +V  ++  GF RAY+ I D+N+T L+   +LF  G G 
Sbjct: 522 GMAVDANVLIFSRIREEIANGMTVQRAISEGFDRAYTAILDANLTTLLVGGILFAMGTGP 581

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 582 VKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 91/250 (36%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         D    +    ++ L       G +         +  +
Sbjct: 374 TTTFTKQMVNGVEKDVPVQTFKEDKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KG+   +   + + ++I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGVDASLWGMLFVSLFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 FNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 SEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVT-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALTDA----------GIPVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|260773396|ref|ZP_05882312.1| protein-export membrane protein SecD [Vibrio metschnikovii CIP
           69.14]
 gi|260612535|gb|EEX37738.1| protein-export membrane protein SecD [Vibrio metschnikovii CIP
           69.14]
          Length = 606

 Score =  207 bits (525), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 145/522 (27%), Positives = 264/522 (50%), Gaps = 34/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 93  NLAPSTPRWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMERLVSQQEEAFRSELRDEKI 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R   + + +   D+   E     +    +        D             +   
Sbjct: 153 RYRAIRSQADSVEIILRDAAQLEETRRLLEANHR--------DMNFTASDRDGRFLLVAK 204

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +   + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 205 FTDARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEIL 264

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V                G     D DG   +++ +V + G  +  A+++ 
Sbjct: 265 GATATLEFREVDATADLAAAAAGRVPAGSEIKLDRDGRPVVLKRRVILGGSSITDASSSA 324

Query: 262 DPKTHKPVVDISFDEMGARR-----------------FFEVTRDNIGKPLAVVLDGRVLT 304
           D      V      E G++                   +  + +       ++     + 
Sbjct: 325 DEYGRPQVNISLDSEGGSKMSAFSRNNIGKLMATVFAEYRDSGERTDDGRVILEKHEEVI 384

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  G
Sbjct: 385 NQATIQSALGRNFRITGINSAAEAQNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMG 444

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A + GL  +++F  + Y  +GL+A+ ++  N++L + ++S++  AT+TLP IAGIVL 
Sbjct: 445 IQACIWGLFAVMIFTALYYRTFGLIANLALLTNLVLIIGIMSMIPGATMTLPGIAGIVLT 504

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+ ERIREE R+ ++   ++  G++ A+STI D+NIT LI  ++LF  G G
Sbjct: 505 VGMAVDANVLIFERIREELREGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTG 564

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           A++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 565 AIKGFAVTLSIGILTSMFTAIIGTRCVVNLLYGGKRINKLSI 606



 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 98/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D      +   +        N    ++ L R     G + A       +  +   
Sbjct: 360 FAEYRDSGERTDDGRVILEKHEEVINQATIQSALGRNFRITGINSAAEAQNLALLLRAGA 419

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I    A++I+  + ++  F L A   L+ ++
Sbjct: 420 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGLFAVMIFTALYYR-TFGLIANLALLTNL 478

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 479 VLIIGIMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GRNPQQAIHQ 535

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     ++  +
Sbjct: 536 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIIGTRCVVNLL 595

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 596 YGGKRINK 603


>gi|332285323|ref|YP_004417234.1| preprotein translocase subunit SecF [Pusillimonas sp. T7-7]
 gi|330429276|gb|AEC20610.1| preprotein translocase subunit SecF [Pusillimonas sp. T7-7]
          Length = 311

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 155/302 (51%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    + FMR       IS+L  I ++  +   G +  I+F GG  + V     V 
Sbjct: 1   MEFFRIHRTVPFMRHALVLNLISLLTFIAAVAFIVLKGFHLSIEFTGGTVMEVHYQESVQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR+ ++SL   D   QNF   ++ ++RL  + G         + V + + +    + 
Sbjct: 61  VDEVRTAIQSLGYTDFQVQNFGTSQDIMIRLPARDGQDAGAQS--QGVMQVLQQQHSDAE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL+  G++ ++     +LIY+  RF+W  AL      + D+   LGF
Sbjct: 119 LRRVEFVGPQVGQELLHNGLMALLFVVAGILIYLAFRFEWKLALACAIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FALF  EF+L+ +A VL ++GYSVN+ VVV DR+R+N +     +   ++ID SI + + 
Sbjct: 179 FALFQWEFSLSVLAGVLAVLGYSVNESVVVMDRIRENFRKQRK-MPVSEIIDLSITQNIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  + +F++ +  GI     SS+F+AA + +++   R   
Sbjct: 238 RTIITHGSTQMMVLSMFFFGGPTLHNFSLALTIGIWFGIYSSVFVAAALSMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|240949467|ref|ZP_04753807.1| preprotein translocase subunit SecD [Actinobacillus minor NM305]
 gi|240296040|gb|EER46701.1| preprotein translocase subunit SecD [Actinobacillus minor NM305]
          Length = 604

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 163/523 (31%), Positives = 279/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     + +  GLDLRGG   ++EVD    +    +   D LR  L+KE I
Sbjct: 93  NLAPATPTWLTDIGGSPMKRGLDLRGGVRFLMEVDMKTAMEKQQESLQDALRLELRKEKI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FADS   +     V      + +              +  E++ 
Sbjct: 153 QYKAVKKGENFATIIEFADSDAADKAVRYVKRMHTTLEASY-----------NSPTEVTF 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS + +      AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 202 ALSASGLSTTRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    + +    G+           D    +++ K  + G H+    + 
Sbjct: 262 LGATATLEFRLVNETVNAEAAARGIVPADSELQHTRDERPVVLKRKPALGGEHIID-ASA 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I  D  G  +  ++T+  +GK +A +                       
Sbjct: 321 GKDERGLPQVSIKLDREGGDQMADMTKAAVGKAMATLYSEFKDSGRRDANGKVILEKHTE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER VGA LG+D++ 
Sbjct: 381 VINVATVNSRLGSQFQITGINSAAEAQNLAVLLRSGALIAPIVIVEERTVGASLGADNVQ 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L ++F +V Y  +G+ A  ++ +N+ILT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 KGMEAGMYGLILTIIFCLVYYKMFGIFASVALTVNMILTVGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +SV  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSVQQAISEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFA+T+ L ++ISMFTAIS  R ++ ++    K      
Sbjct: 561 GPVKGFAVTLALGVMISMFTAISGTRMLVNWVYGGNKRVKKLW 603



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 103/249 (41%), Gaps = 4/249 (1%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +   D     +N + +        N     + L       G + A       V  +   
Sbjct: 358 YSEFKDSGRRDANGKVILEKHTEVINVATVNSRLGSQFQITGINSAAEAQNLAVLLRSGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     VG  +  + ++KG+   +   I  +I+  + +K  F + A   L +++
Sbjct: 418 LIAPIVIVEERTVGASLGADNVQKGMEAGMYGLILTIIFCLVYYKM-FGIFASVALTVNM 476

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T+G  +L G    +  +A ++  +G SV+  V++Y+R+++ ++      S +  I + 
Sbjct: 477 ILTVGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSVQQAISEG 533

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            N        +++   ++ L +   G   +  FA+ +A G++++  ++I     ++ ++Y
Sbjct: 534 YNGAFTSIFDSNLTTILTSLVLYAVGTGPVKGFAVTLALGVMISMFTAISGTRMLVNWVY 593

Query: 825 DWRAKNARI 833
               +  ++
Sbjct: 594 GGNKRVKKL 602


>gi|170732041|ref|YP_001763988.1| preprotein translocase subunit SecD [Burkholderia cenocepacia
           MC0-3]
 gi|169815283|gb|ACA89866.1| protein-export membrane protein SecD [Burkholderia cenocepacia
           MC0-3]
          Length = 673

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 162/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + RS L+ + I    + +++  + ++F+D++  E+    +   +  +           
Sbjct: 160 ASDARSLLRDKNIRDGGVSRVEQSVVVNFSDAQTAEDARKVLAASITELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ GS RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G            L++  V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGSQAPVLLKKDVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608



 Score = 41.2 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 29/124 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IGLL  LPNF  ++                           ++V 
Sbjct: 3   RYPLWKYVVMVVALAIGLLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ----NKITLSFADSRFKENIADKVTL 117
                         ++ S L    I    +          I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDSTTLTQVESALASAQIKPDDVTFENTATSANIRVRLKDTDTQLRVKDLLQK 97

Query: 118 FLQG 121
            L  
Sbjct: 98  SLNA 101


>gi|330973523|gb|EGH73589.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 1044

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 68/687 (9%), Positives = 183/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKDAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    +         F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  ++
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAIV 666



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V  S   S   S     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEILGTPAPGYSSGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A T V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMTEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +        +
Sbjct: 1009 ITAVILAIFWVPLFFVTVSGLFKSKQK 1035


>gi|24374630|ref|NP_718673.1| preprotein translocase subunit SecD [Shewanella oneidensis MR-1]
 gi|24349257|gb|AAN56117.1|AE015748_5 protein-export membrane protein SecD [Shewanella oneidensis MR-1]
          Length = 616

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 165/522 (31%), Positives = 283/522 (54%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + RS L++E I
Sbjct: 104 NLAPATPKWLESMGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKVADFRSQLREEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R     I + F D+    +    +             D   + +    +  +  V
Sbjct: 164 RYAGIRINAQGIEIKFRDAESLASAERFLKSRSN--------DMVFSDVSKGEDFALQAV 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S+  + QV   A++Q++  IR R++++G+SE  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 MSETYLKQVKEEALQQNITTIRNRVNELGVSEPVVQRQGAERIIVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + FH V                G    +  +G Q +++ +V ++G H+ GA  +F
Sbjct: 276 GATASIEFHMVDDKADANAAQAGRVPAGSEVYQRREGGQVVLKKEVMLTGDHITGAQPSF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA---------------- 305
           D  + +P V I+ D  G   F  VT+DNIGKP+A +      +                 
Sbjct: 336 DQYS-RPQVSINLDAKGGTIFSNVTKDNIGKPMATLFIEYKDSGERNADGSVKMLKIEEV 394

Query: 306 -PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
             V       G+  +    +   A  LA +LRAG+L   ++IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVSIVEERTIGPSLGAENIASG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++  +  +VLFM++ Y  +GL+A+ ++ +N+++ + ++S++  A LTLP IAG+VL 
Sbjct: 455 INAMLWSMGAVVLFMLIYYRAFGLIANIALTMNLVMIVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           IG+AVD N+L+ ERIR+E R  +SV  ++  G++ A+S+I DSNIT  I  ++LF  G G
Sbjct: 515 IGMAVDGNVLIYERIRDEIRAGRSVQQAIQEGYANAFSSIADSNITTFITALILFAVGSG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFTAI   RA++  +   K+++++ I
Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKRIQTLSI 616



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 95/239 (39%), Gaps = 6/239 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  R+   S+++  I            +   +              +  +   ++   +
Sbjct: 376 DSGERNADGSVKMLKIEEVISVATIQARLGRNFVITGLSHGEAQNLALLLRAGALIAPVS 435

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     +GP +  E I  GI  ++ S  A+++++ I ++  F L A   L +++   +G 
Sbjct: 436 IVEERTIGPSLGAENIASGINAMLWSMGAVVLFMLIYYR-AFGLIANIALTMNLVMIVGV 494

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  IG +V+  V++Y+R+R  ++      S +  I +      
Sbjct: 495 MSMIPGAVLTLPGIAGMVLTIGMAVDGNVLIYERIRDEIRA---GRSVQQAIQEGYANAF 551

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWR 827
                +++  FI+ L +   G   +  FA+ +  GI  +  ++I     I+       R
Sbjct: 552 SSIADSNITTFITALILFAVGSGAVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKR 610


>gi|58040825|ref|YP_192789.1| preprotein translocase subunit SecD [Gluconobacter oxydans 621H]
 gi|58003239|gb|AAW62133.1| Protein translocase subunit SecD [Gluconobacter oxydans 621H]
          Length = 513

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 193/524 (36%), Positives = 292/524 (55%), Gaps = 12/524 (2%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M  +   ++  + IC IG+L+ LPNFL           +P  +I LGLDLRGGS+L+L++
Sbjct: 1   MYYSRLRLLGVAGICLIGVLLCLPNFLRSPSPS-----LPWRQIHLGLDLRGGSYLLLQL 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D     +  LQ   D+ R  L    +G     +     +LSF      E           
Sbjct: 56  DLKSLEHDRLQSLQDQARQTLLDRSLGYRDFARDDATASLSFMPRSDAE------RDAAL 109

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L          +  +  I + L    +      A+ QS+EI+R+RID  G  + +
Sbjct: 110 KAMQSLPPVVPNEFTTSEKDGRIVLTLQHEAMLARAREAVAQSIEIVRRRIDATGAIDPS 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           I R G  RI+++LPG  DP R++ LLGTTA+++F  + PN S            +S   Q
Sbjct: 170 IAREGDDRIVVELPGVSDPERIKSLLGTTARLTFRLLAPNPSVAS-PGSTMLEDESVHTQ 228

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+D V++ G  L  A A  D ++    V    +  GA  F  VTR N+GK  A+VLD 
Sbjct: 229 VAVQDHVDVDGTDLTNAGAVIDQQSGGWAVTFQLNSAGATAFANVTRANVGKRFAIVLDN 288

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +V+ AP I   I +G  QI+G F   +A  LA +LRAG+LP  L++VE+R +G  LG+ S
Sbjct: 289 KVIEAPNIINPITAGNGQITGGFDARSASDLALLLRAGALPAPLSVVEQRTIGPSLGAAS 348

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I+ G  +++ GL+L++ FM++ YG++GL AD ++F N+IL +A+LSL  ATLTLP +AG+
Sbjct: 349 IHAGVISLLTGLLLVIAFMVLFYGRFGLYADIALFANLILMVAILSLFQATLTLPGMAGM 408

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L +G+AVD+NIL+NERIREE ++ +    +L  GF RA  TI DSN TA +A V+LF F
Sbjct: 409 LLTLGMAVDANILINERIREEVKRGRGPLQALQAGFDRATGTIIDSNATAFLAHVMLFVF 468

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           G G VR FA+T+ + I+ ++FT + + R +++      + K + 
Sbjct: 469 GTGPVRNFALTITIGIVTTLFTTLLLSRLLVVRWYALARPKELP 512



 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 71/153 (46%), Gaps = 4/153 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +    I  G++ ++   + ++ ++ + +   F L A   L  ++   +   +L
Sbjct: 337 QRTIGPSLGAASIHAGVISLLTGLLLVIAFMVLFYG-RFGLYADIALFANLILMVAILSL 395

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F     L  +A +L  +G +V+  +++ +R+R+ +K           +    +   G  +
Sbjct: 396 FQATLTLPGMAGMLLTLGMAVDANILINERIREEVK---RGRGPLQALQAGFDRATGTII 452

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++  AF++ + + V+G   + +FA+ +  GIV
Sbjct: 453 DSNATAFLAHVMLFVFGTGPVRNFALTITIGIV 485


>gi|293607157|ref|ZP_06689499.1| protein-export membrane protein SecF [Achromobacter piechaudii ATCC
           43553]
 gi|292814491|gb|EFF73630.1| protein-export membrane protein SecF [Achromobacter piechaudii ATCC
           43553]
          Length = 311

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 153/302 (50%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++    ++  + T G +  I+F GG  + V   +   
Sbjct: 1   MEFFRIHRTIPFMRHALVLNIISLVTFALAVFFIITRGFHLSIEFTGGTVMEVNYAQTAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  +  L   D   QNF   ++ ++RL  Q G + A     E V   +        
Sbjct: 61  LENVRGVVSKLGYSDFQVQNFGTSRDVMIRLPLQEGQTSATQS--ESVLAALKTADSSVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP+I +EL+  G++ +++  I +++Y+  RF+W FA+  +   + D+   LGF
Sbjct: 119 LRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGFRFEWKFAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +A VL ++GYSVN+ VV+ DR+R+N + Y       ++I+ +I +T+ 
Sbjct: 179 FAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRK-ADVTEVINSAITQTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI     SS+F+AA + +++   R   
Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPSLHYFAMALTIGIWFGIYSSVFVAAALAMWMGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299



 Score = 45.8 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 34/179 (18%), Positives = 92/179 (51%), Gaps = 5/179 (2%)

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTL 402
           + +     VG  +G + ++ G  A++  ++ I++++   +  K+ +    +   +V++ L
Sbjct: 117 VELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGFRFEWKFAVAGVIANLHDVVIIL 176

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAY 460
              +      +L  +AG++  +G +V+ ++++ +RIRE  RK +   V   ++   ++  
Sbjct: 177 GFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKADVTEVINSAITQTI 236

Query: 461 S-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           S TI     T ++   +LFF GG ++  FA+ + + I   +++++ +  A+ +++   +
Sbjct: 237 SRTIITHGSTQMMVLAMLFF-GGPSLHYFAMALTIGIWFGIYSSVFVAAALAMWMGVKR 294


>gi|224437392|ref|ZP_03658363.1| preprotein translocase subunit SecF [Helicobacter cinaedi CCUG
           18818]
          Length = 323

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 88/285 (30%), Positives = 157/285 (55%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F++   +G+ IS++  + S  LL   G N GIDF GG  + +  ++   L+ +R  L 
Sbjct: 10  YDFVKYSSYGLVISLVLILASFMLLGVKGFNLGIDFAGGSVVQLQYSKDAPLAQIRELLA 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             +    S  +  G K  ++         V +    +++   + +      ++  + VGP
Sbjct: 70  KDERFKNSQVSEFGSKQEVLLKVPYIPTGVNENMAQDIIT--LLKPSGDFELRRLDSVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL + GIV + ++ +AM+IYI  R++W F+L  +  L+ D+    G   L G++FN
Sbjct: 128 KVGDELKQNGIVALALALVAMMIYISFRYEWRFSLAGVLALMHDVIIVSGVVILVGVDFN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+LTLIGYS+ND ++++DR+R+ M L       R +I+++++ TL R++ TS+  
Sbjct: 188 LDVLAALLTLIGYSINDTIIIFDRIREQM-LIKRQKDMRYVINEAVSCTLSRTLLTSLTV 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           F  VL + ++GG +I  F++PM  G++VA  SSIF A  + +   
Sbjct: 247 FFVVLTLYLFGGEIIVGFSLPMLVGVIVATCSSIFFAPRLAIMFG 291


>gi|117928547|ref|YP_873098.1| preprotein translocase subunit SecF [Acidothermus cellulolyticus
           11B]
 gi|117649010|gb|ABK53112.1| protein translocase subunit secF [Acidothermus cellulolyticus 11B]
          Length = 414

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 74/312 (23%), Positives = 147/312 (47%), Gaps = 13/312 (4%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L    I+  F+        +S +  +  +  L   GL+ G++FKGG +     ++   
Sbjct: 9   HGLYTGQISFDFVGRWRRWFTLSAVVIVIGLIGLGVRGLHLGLEFKGGTEFTFP-DKGYS 67

Query: 591 LSVVRSNLESLQIGDISFQNFD--GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            S V   +    + D   Q+    G      ++Q +  D  A   V++ +  K+      
Sbjct: 68  TSQVADVVSGAGVSDPVVQHLSRPGVGGATFQVQTKALDKSASDAVIKAITTKL---GVP 124

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           +   +T  VG    +++  K +  +I+  +A+++Y+ + F+W  A+ AI  L+ D+  T+
Sbjct: 125 ADEVSTTTVGASWGKQITNKAVESLIVFLVAVVLYLTLFFEWKMAISAIIALLHDLIITV 184

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSIN 766
           G +AL G +     V  +LT++GYS+ D VVV+D++R+N +     + +++    + ++N
Sbjct: 185 GIYALVGFDVTPATVIGLLTILGYSLYDTVVVFDKVRENTRGIAGGSRMTYSQAANLAVN 244

Query: 767 ETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +TL RS+ TS+ A + V  +        G   +   A+ +  G+     SSIF+A PIL 
Sbjct: 245 QTLVRSINTSVIALLPVASLLFVGAGLLGAGSLKDLALALFVGLATGTYSSIFVATPILT 304

Query: 822 FIYDWRAKNARI 833
            + +   +   +
Sbjct: 305 LLKEREPQFRAL 316


>gi|289628490|ref|ZP_06461444.1| multidrug/solvent tranporter [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|330868780|gb|EGH03489.1| multidrug/solvent transporter [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 1044

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 70/687 (10%), Positives = 184/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDFATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    K+        F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  V+
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L    +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDFATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   +   V  S   S   +     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTSAPGYSSGE 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +        +
Sbjct: 1009 ITAVILAIFWVPLFFVSVSGLFKSKKK 1035


>gi|198283823|ref|YP_002220144.1| protein-export membrane protein SecD [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218665217|ref|YP_002426460.1| protein-export membrane protein SecD [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248344|gb|ACH83937.1| protein-export membrane protein SecD [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218517430|gb|ACK78016.1| protein-export membrane protein SecD [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 594

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 186/505 (36%), Positives = 293/505 (58%), Gaps = 20/505 (3%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           S +   P  +       ++LGLDLRGG +L+L VD D  +   LQ  S  LR+FL+   +
Sbjct: 101 SQMSAEPDWLRSIGGKPVNLGLDLRGGVYLLLRVDTDAVIKHALQQDSGSLRTFLRHRNL 160

Query: 87  GVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++       + +   ++         V          L                +SI
Sbjct: 161 QYLAVNMTGPQSLAIEMENAAVAAQAQKAVAERYPDYAVVLQPHA-----------VLSI 209

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            ++ +   ++   A++Q++ +IR RID++G+SE  IQR G+  I +QLPG QD  R + +
Sbjct: 210 SITPDAASKMKDDALQQAIVVIRNRIDELGVSEPVIQRQGADHIAVQLPGVQDTQRAKSI 269

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD-----GNQYLVEDKVEISGIHLNGATAN 260
           +G+TA++ F  V    +    + G      +      G  Y++     ++G +L+ A+A 
Sbjct: 270 IGSTAQLEFKMVDDQANMTEALKGELPAGTALFYGVHGTPYVLYTNTVLTGRYLSNASAG 329

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
            D  + + VV++SF+  G R F ++T  N+GK +A++LD +V+TAPVI +AI  G+AQI+
Sbjct: 330 VDNNSGQAVVNVSFNNEGTRIFGDLTTKNVGKRMAILLDNKVVTAPVIREAITEGRAQIT 389

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
           G   ++ A   A  LRAG+LP  ++I EER VG  LG DSI+ G  A+V G+  +VLFM 
Sbjct: 390 GFSGLKDASNAAIELRAGALPAPVHISEERTVGPTLGQDSIHDGVMAVVFGMAFVVLFMT 449

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           + Y  +GL+AD +I +N++  LA+LS++G TLTLP IAGIVL IGLAVD+N+LV ERIRE
Sbjct: 450 LYYRAFGLIADVAILVNILAILAVLSIMGGTLTLPGIAGIVLKIGLAVDANVLVFERIRE 509

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E R   S   ++D GF +A++TI DSNIT LIA +VLF FG GA++GFA+ + + ++ SM
Sbjct: 510 ELRHGMSTRAAIDAGFKKAFATIVDSNITVLIAALVLFQFGTGAIKGFALVLTIGVITSM 569

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDI 525
           FTA  + R ++   +  ++++ + I
Sbjct: 570 FTATMMSRGIIELALGKRRVQKLYI 594



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/179 (20%), Positives = 86/179 (48%), Gaps = 4/179 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I     VGP + ++ I  G++ V+     +++++ + ++  F L A   ++++I   L 
Sbjct: 414 HISEERTVGPTLGQDSIHDGVMAVVFGMAFVVLFMTLYYR-AFGLIADVAILVNILAILA 472

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             ++ G    L  +A ++  IG +V+  V+V++R+R+ ++     +S R  ID    +  
Sbjct: 473 VLSIMGGTLTLPGIAGIVLKIGLAVDANVLVFERIREELR---HGMSTRAAIDAGFKKAF 529

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              V +++   I+ L +  +G   I  FA+ +  G++ +  ++  ++  I+      R 
Sbjct: 530 ATIVDSNITVLIAALVLFQFGTGAIKGFALVLTIGVITSMFTATMMSRGIIELALGKRR 588


>gi|119945872|ref|YP_943552.1| protein-export membrane protein SecD [Psychromonas ingrahamii 37]
 gi|119864476|gb|ABM03953.1| protein-export membrane protein SecD [Psychromonas ingrahamii 37]
          Length = 620

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 159/520 (30%), Positives = 276/520 (53%), Gaps = 36/520 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             +  A+    + LGLDLRGG + ++EVD D+ V+   +    +LR  L+ E I    + 
Sbjct: 110 PAWLEAIGAGPLKLGLDLRGGVYFLMEVDMDEAVSKAQEQMVQDLRGDLRTEKIRFRGIT 169

Query: 93  QIQN--KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
           +  +   + ++F +    ++  D +           N   + +  V      +SI +++ 
Sbjct: 170 KANSATGVLVTFTEQSILDSAIDYLK--------PNNPGYQFSESVDNGRYILSIEMTEQ 221

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
            +     +A++Q++ I+R R++++G++E  +QR G+ RI++QLPG QD +R +++LG TA
Sbjct: 222 KLQASKEYALQQNLTILRNRVNELGVAEPLVQRQGTDRIVVQLPGIQDTARAKEILGATA 281

Query: 211 KMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
            + FH V    +    + G         ++ DG   +V+ ++ ++G H+     +     
Sbjct: 282 TLEFHAVDSETNINDALAGRLPSSSIVYKERDGRPVVVKKQIILTGNHIVD-AQSGSDDM 340

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------------VLTAPV 307
            +P V IS D  G       T++NIGKP+A +                       +    
Sbjct: 341 GRPQVSISLDSQGGSMMSRFTKNNIGKPMATLFIEYLPTGKKKPNGKAIIEKREEVANVA 400

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             QA      +I+G      A  LA +LRAG+L   + IV+ER +G  LG ++I  G  A
Sbjct: 401 TIQAQLGRSFRITGLDNAAEAHNLALLLRAGALIAPIQIVQERTIGPSLGQENIDNGIKA 460

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGL 426
           +V G++ +VLFM V Y K+G++A+ ++  N+++ +  +S++  ATLTLP IAGIVL +G+
Sbjct: 461 MVYGMLAVVLFMFVYYRKFGVIANTALLFNIVMIIGFMSMIPGATLTLPGIAGIVLTVGM 520

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+N+L+ ERIREE    +S+  ++  G+S A+STI D+NIT  I  ++LF  G G ++
Sbjct: 521 AVDANVLIFERIREELAAGKSIQQAIHEGYSNAFSTIADANITTFITALILFAVGTGPIK 580

Query: 487 GFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDI 525
           GFA+T+ + I  SMFT+I   RA++         +K + I
Sbjct: 581 GFAVTLAIGIATSMFTSIFGTRAIVNAVWGGRNDIKKLSI 620



 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 99/220 (45%), Gaps = 5/220 (2%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +  L R     G   A       +  +   ++    I     +GP + +E I  GI  ++
Sbjct: 403 QAQLGRSFRITGLDNAAEAHNLALLLRAGALIAPIQIVQERTIGPSLGQENIDNGIKAMV 462

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYS 733
              +A+++++++ ++  F + A T L+ +I   +GF ++  G    L  +A ++  +G +
Sbjct: 463 YGMLAVVLFMFVYYR-KFGVIANTALLFNIVMIIGFMSMIPGATLTLPGIAGIVLTVGMA 521

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  V++++R+R+ +       S +  I +  +         ++  FI+ L +   G   
Sbjct: 522 VDANVLIFERIREELAA---GKSIQQAIHEGYSNAFSTIADANITTFITALILFAVGTGP 578

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I  FA+ +A GI  +  +SIF    I+  ++  R    ++
Sbjct: 579 IKGFAVTLAIGIATSMFTSIFGTRAIVNAVWGGRNDIKKL 618


>gi|172059696|ref|YP_001807348.1| preprotein translocase subunit SecD [Burkholderia ambifaria MC40-6]
 gi|171992213|gb|ACB63132.1| protein-export membrane protein SecD [Burkholderia ambifaria
           MC40-6]
          Length = 673

 Score =  207 bits (525), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 159/516 (30%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+   I    + ++   + ++F+D++  E+    +   +  +           
Sbjct: 160 ASDARALLRDRNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLAASVTELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ GS RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKEVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRSVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+++   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608



 Score = 40.8 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +    +   + ++ LD            
Sbjct: 3   RYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQ----VSSGKATVKLD------------ 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                +  L      L S   K     F        I +   D+  +  + D +   L  
Sbjct: 47  -----STTLTQVESALASAQIKPDDITFENTASNANIRVRLKDTDTQLRVKDLLQKSLNA 101


>gi|323143765|ref|ZP_08078433.1| export membrane protein SecD [Succinatimonas hippei YIT 12066]
 gi|322416478|gb|EFY07144.1| export membrane protein SecD [Succinatimonas hippei YIT 12066]
          Length = 625

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 153/528 (28%), Positives = 276/528 (52%), Gaps = 44/528 (8%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ M     + + LGLDLRGG H ++EVD D+ +         + RS L+   +
Sbjct: 103 NLAPATPAWMRSLGMHPLKLGLDLRGGVHFLMEVDMDEAMRKMKTQLVSDFRSELRNADL 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            +   R   + + ++F D+  ++     ++   +    +                 IS  
Sbjct: 163 RLAGARTEGDDVVVTFRDAATRDAAEKLLSDHHRDFVFQSYD--------RDGRYFISAK 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++Q  + ++ ++A++Q++ IIR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 215 MTQQKLSEIRTNAVDQNINIIRNRVNELGVAEPLVQRQGADRIVVELPGIQDTARAKEIL 274

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFL-----RDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V  +      M G          D +    ++E +V ++G H+    ++ 
Sbjct: 275 GATATLEFRLVDSSADLNAAMQGRVPAGTELHFDKNNYPVVLEKRVILTGDHIVD-ASSS 333

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR-------------------- 301
             +  +P V+IS D  G       T+DN+GK +A                          
Sbjct: 334 SDENGRPQVNISLDSRGGSIMSAFTKDNVGKSMATNFIEYKVIPNEDENAPKAGEEGYKP 393

Query: 302 ------VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +      Q       +I+G  +++ A  LA +LRAG+L   + IVEER +G  
Sbjct: 394 RFEKVEQIINVATIQTRLGSNFRITGIDSVKEAHNLALLLRAGALIAPIQIVEERTIGPS 453

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTL 414
           LG  +I  G  A+  G++ + +FM++ Y  +G +A+ ++  N++L + ++SL+  AT+TL
Sbjct: 454 LGQQNIDSGMQAMFYGVLFLAVFMLIYYKAFGFIANLALIFNLVLIVGVMSLIPGATMTL 513

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL +G+AVD+N+L+ ERIREE R  ++V  S+++G+ RA++TI DSNIT  I  
Sbjct: 514 PGIAGIVLTLGMAVDANVLIYERIREELRAGRTVQQSINLGYERAFATIADSNITTFITA 573

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           ++LF  G G+V+GFA+ + + +  SMFTA++  RA++  I   +    
Sbjct: 574 LILFMVGTGSVKGFALVLMVGLASSMFTAVTACRAIVNIIWGGRPNLK 621



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 94/253 (37%), Gaps = 5/253 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +               +          N    +  L       G    +      +  +
Sbjct: 375 VIPNEDENAPKAGEEGYKPRFEKVEQIINVATIQTRLGSNFRITGIDSVKEAHNLALLLR 434

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              ++    I     +GP + ++ I  G+  +    + + +++ I +K  F   A   LI
Sbjct: 435 AGALIAPIQIVEERTIGPSLGQQNIDSGMQAMFYGVLFLAVFMLIYYK-AFGFIANLALI 493

Query: 702 LDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            ++   +G  +L  G    L  +A ++  +G +V+  V++Y+R+R+ ++      + +  
Sbjct: 494 FNLVLIVGVMSLIPGATMTLPGIAGIVLTLGMAVDANVLIYERIREELRA---GRTVQQS 550

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I+            +++  FI+ L + + G   +  FA+ +  G+  +  +++     I+
Sbjct: 551 INLGYERAFATIADSNITTFITALILFMVGTGSVKGFALVLMVGLASSMFTAVTACRAIV 610

Query: 821 LFIYDWRAKNARI 833
             I+  R    ++
Sbjct: 611 NIIWGGRPNLKKL 623



 Score = 39.7 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 39/118 (33%), Gaps = 27/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L ++I  +G   ALPN   +    +                  G+H    ++
Sbjct: 4   KFPLWKNLLIAVIILLGFFYALPNLYGEDPALQI----------------SGTH---GIE 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D  V+  +Q         L  + I          ++ + FA++  +    D V   L
Sbjct: 45  VDSTVSSQVQTL-------LDGKNIKG-DYELENGQLLIRFANTNDQILAKDIVAKAL 94


>gi|223042003|ref|ZP_03612186.1| preprotein translocase subunit SecD [Actinobacillus minor 202]
 gi|223017201|gb|EEF15630.1| preprotein translocase subunit SecD [Actinobacillus minor 202]
          Length = 604

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 162/523 (30%), Positives = 278/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     + +  GLDLRGG   ++EVD    +    +   D LR  L+KE I
Sbjct: 93  NLAPATPTWLTDIGGSPMKRGLDLRGGVRFLMEVDMKTAMEKQQESLQDALRLELRKEKI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FADS   +     V      + +              +  E++ 
Sbjct: 153 QYKAVKKGENFATIIEFADSDAADKAVRYVKRMHTTLEASY-----------NSPTEVTF 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS   +      AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 202 ALSATGLSTTRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    + +    G+           D    +++ K  + G H+    + 
Sbjct: 262 LGATATLEFRLVNETVNAEAAARGIVPADSELQHTRDERPVVLKRKPALGGEHIID-ASA 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I  D  G  +  ++T+  +GK +A +                       
Sbjct: 321 GKDERGLPQVSIKLDLEGGDQMADMTKAAVGKAMATLYSEFKDSGRRDANGKVILEKHTE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER VGA LG+D++ 
Sbjct: 381 VINVATVNSRLGSQFQITGINSAAEAQNLAVLLRSGALIAPIVIVEERTVGASLGADNVQ 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L ++F +V Y  +G+ A  ++ +N+ILT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 KGMEAGMYGLILTIIFCLVYYKMFGIFASVALTVNMILTVGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +SV  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSVQQAISEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFA+T+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 561 GPVKGFAVTLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603



 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 103/249 (41%), Gaps = 4/249 (1%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +   D     +N + +        N     + L       G + A       V  +   
Sbjct: 358 YSEFKDSGRRDANGKVILEKHTEVINVATVNSRLGSQFQITGINSAAEAQNLAVLLRSGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     VG  +  + ++KG+   +   I  +I+  + +K  F + A   L +++
Sbjct: 418 LIAPIVIVEERTVGASLGADNVQKGMEAGMYGLILTIIFCLVYYKM-FGIFASVALTVNM 476

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T+G  +L G    +  +A ++  +G SV+  V++Y+R+++ ++      S +  I + 
Sbjct: 477 ILTVGLMSLIGATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSVQQAISEG 533

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            N        +++   ++ L +   G   +  FA+ +A G++++  ++I     ++ ++Y
Sbjct: 534 YNGAFTSIFDSNLTTILTSLVLYAVGTGPVKGFAVTLALGVMISMFTAITGTRMLVNWVY 593

Query: 825 DWRAKNARI 833
               +  ++
Sbjct: 594 GGNKRVKKL 602


>gi|326329827|ref|ZP_08196147.1| protein-export membrane protein SecF [Nocardioidaceae bacterium
           Broad-1]
 gi|325952413|gb|EGD44433.1| protein-export membrane protein SecF [Nocardioidaceae bacterium
           Broad-1]
          Length = 412

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 136/316 (43%), Gaps = 10/316 (3%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           S          L     +  F+  R      S +  +  +  ++  G+N GIDF GG + 
Sbjct: 2   SKFSFSRLGKELYTGEKSFDFVGRRMVWYAASGVVLVAVVLGVWLQGINLGIDFTGGTRY 61

Query: 582 GVLANRPVD--LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            V   +        +R+ +    +            +  + ++ +     ++     +++
Sbjct: 62  TVTVAQADQKLADDLRTAVGDTAVEAADGATVRTSGSKSIVIETKAIADNSKADD-SIME 120

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
                        +   +GP   + +  K  + + I  + ++++IWI F+ W  ++ A+ 
Sbjct: 121 AITKTADVAEDDVSRTGIGPSWGQRVASKAGLALGIFLVGVVLFIWIYFREWKMSVAAVV 180

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISF 757
            L  D+  T+G +A+ G E     V   LT++GYS+ D VVV+D++++N +  +    ++
Sbjct: 181 ALAHDVVITVGVYAIVGFEVTPATVTGFLTILGYSLYDTVVVFDKVKENTRNLSQKKQTY 240

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSS 812
               + +IN+TL RSV TS+   + V+ +        G S +   ++ +  G+ V   SS
Sbjct: 241 ASAANLAINQTLVRSVNTSIIGLLPVVAILYVSTVQLGTSSLKDISLVLFVGMAVGTYSS 300

Query: 813 IFIAAPILLFIYDWRA 828
           IFIA P+L+ +     
Sbjct: 301 IFIATPLLVHLKSKEK 316


>gi|297539528|ref|YP_003675297.1| protein-export membrane protein SecF [Methylotenera sp. 301]
 gi|297258875|gb|ADI30720.1| protein-export membrane protein SecF [Methylotenera sp. 301]
          Length = 322

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 99/297 (33%), Positives = 164/297 (55%), Gaps = 3/297 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+G+DF GG  + V   +  +
Sbjct: 1   MELFRIKKDIPFMSYGRLTTAISLVTFILAVVFLATRGLNFGVDFTGGTVMEVNYPQAAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  ++S+ + + + QNF    + L+RL  + G SVA  ++ E VK  +      + 
Sbjct: 61  LESVRKAVDSIGLKEATVQNFGSSHDVLIRLPVKTGVSVA--KLSEEVKAALVAADSTAE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VG ++  EL   G + +   ++ +++Y+W+RF+W FA+ AI   + D+   LGF
Sbjct: 119 VRRVEAVGAQVGDELYENGGLALFFVSLGIMLYLWLRFEWRFAVAAIIANMHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EFNLT +AA+L ++GYSVN+ VVV+DR+R+N +      S   +ID +I  T+ 
Sbjct: 179 FAFFQWEFNLTVLAAILAVLGYSVNESVVVFDRVRENFRKMRK-ASVVQVIDNAITRTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           R++ T       V  M ++GG V+ +FA+ +  GI+    SS+ +A PI +++   R
Sbjct: 238 RTIITHTMTQTMVGSMLLFGGEVLHNFALALTIGILFGIYSSVLVACPIAMWLGVNR 294


>gi|317128215|ref|YP_004094497.1| protein-export membrane protein SecF [Bacillus cellulosilyticus DSM
           2522]
 gi|315473163|gb|ADU29766.1| protein-export membrane protein SecF [Bacillus cellulosilyticus DSM
           2522]
          Length = 308

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 144/305 (47%), Gaps = 9/305 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                +   + F++ R      S    +  + LL T GLN GIDF+ G  + VL+N  V 
Sbjct: 1   MNFDHEETKLDFVKHRKKFFVFSGTLLLLGVVLLATLGLNLGIDFRSGTTVDVLSNDSVT 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +++  E++                   +            V    +++         
Sbjct: 61  TAEIQAEFEAIGFEPDDITIAGNNNEIGRAVFIGGLTQDEGLAVQSHFEERYE------N 114

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                 V P +  EL R  I+ V+I+A+ ++IY+ IRF++ + + AI  L  D    L  
Sbjct: 115 RPTVNTVTPMVGEELARNAIISVLIAAVGIIIYVTIRFEFLYGISAIVALFHDALFILVV 174

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINE 767
           F++  +E N+  +AAVLT++GYS+ND +V +DR+R+NM       +F D   +++KS+ +
Sbjct: 175 FSILQMEVNIPFIAAVLTIVGYSINDTIVTFDRIRENMSYEKKVKNFDDVARVVNKSLVQ 234

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL RS+ T +    +   + V+GG  + +F+  +  G+V    SS+FIAA + L +   +
Sbjct: 235 TLARSINTVLTVVFAAGALFVFGGEALRTFSFALVVGLVAGTYSSLFIAAQLWLVLKSRQ 294

Query: 828 AKNAR 832
               +
Sbjct: 295 LAKKK 299


>gi|118594456|ref|ZP_01551803.1| protein-export membrane protein SecD [Methylophilales bacterium
           HTCC2181]
 gi|118440234|gb|EAV46861.1| protein-export membrane protein SecD [Methylophilales bacterium
           HTCC2181]
          Length = 631

 Score =  207 bits (525), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 157/526 (29%), Positives = 279/526 (53%), Gaps = 28/526 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L+   P++L                + LGLDLRGG H ++++D            
Sbjct: 100 VVALNLISNSPSWLTGIGA---------LPMYLGLDLRGGVHFLMQLDLSKVSEKKSDGL 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF---LQGVNSKLNVDP 130
             + R  L+ E +  F+ ++I + I + F  +       D +             ++   
Sbjct: 151 LQDTRKLLRDEKVKYFASKKIGDTIEIKFRSADALSKAKDIIRSQGGGRGIFGGSISKTT 210

Query: 131 KKNLLVTTTEKEISIVLS---QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
           +          +  I+L      + +  +S A++Q++E +  R++++G++E  IQ+ G  
Sbjct: 211 EAYEFSEINNTDEFILLVKNNDISNEDTVSFALKQNLETLNNRVNELGVAEPIIQQQGKD 270

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF---------MFGVRFLRDSDG 238
           RI++QLPG QD ++ ++++G TA +    V  + S               G    +D  G
Sbjct: 271 RIVVQLPGVQDTAKAKEIIGRTAILEMRIVDEDQSSPENLETLNPDNLPLGTELYKDRFG 330

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           N  LV+  + ++G  +  A    D +T + +V I+ D  GA  F +VTR+N+GK +A++L
Sbjct: 331 NPILVKKDIILTGERIINAGPGVDQQTGQSIVSITLDSAGANIFKQVTRENVGKRIALLL 390

Query: 299 DGRV----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
             +     +TAPVI   I  G+ QI+G    + A  +A +LRAGSL   + IVEER VG 
Sbjct: 391 IEKNITEVITAPVIKSEIGGGRVQITGMRNAQEATDVALLLRAGSLATPMEIVEERTVGP 450

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            +G ++I +G  + + G + I + M   Y  +G+++   + +N++  +ALLS++ ATLTL
Sbjct: 451 SMGKENIARGINSTIWGFLAIAIMMASYYMLFGVISVIGLSVNLLFLVALLSVIQATLTL 510

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P +A I L +G+A+D+N+L+NERIR+E R   +   S+ +G+ +A+ TI DSNIT +IA 
Sbjct: 511 PGLAAIALTLGMAIDANVLINERIRDELRNGNTPQASIKIGYEKAWGTILDSNITTMIAG 570

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + LF FG G ++GFA+   L I+ SM++AI + R+++ +I   ++ 
Sbjct: 571 IALFMFGSGPIKGFAVVHVLGIITSMYSAIWVSRSIVNYIYGSRRK 616



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/201 (18%), Positives = 90/201 (44%), Gaps = 4/201 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            AQ      +  +   +     I     VGP + +E I +GI   I   +A+ I +   +
Sbjct: 420 NAQEATDVALLLRAGSLATPMEIVEERTVGPSMGKENIARGINSTIWGFLAIAIMMASYY 479

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              F + ++  L +++   +   ++      L  +AA+   +G +++  V++ +R+R  +
Sbjct: 480 -MLFGVISVIGLSVNLLFLVALLSVIQATLTLPGLAAIALTLGMAIDANVLINERIRDEL 538

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      + +  I     +  G  + +++   I+ + + ++G   I  FA+    GI+ +
Sbjct: 539 R---NGNTPQASIKIGYEKAWGTILDSNITTMIAGIALFMFGSGPIKGFAVVHVLGIITS 595

Query: 809 ASSSIFIAAPILLFIYDWRAK 829
             S+I+++  I+ +IY  R K
Sbjct: 596 MYSAIWVSRSIVNYIYGSRRK 616


>gi|118617350|ref|YP_905682.1| preprotein translocase subunit SecF [Mycobacterium ulcerans Agy99]
 gi|183982135|ref|YP_001850426.1| protein-export membrane protein SecF [Mycobacterium marinum M]
 gi|118569460|gb|ABL04211.1| protein-export membrane protein SecF [Mycobacterium ulcerans Agy99]
 gi|183175461|gb|ACC40571.1| protein-export membrane protein SecF [Mycobacterium marinum M]
          Length = 446

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 131/296 (44%), Gaps = 11/296 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    GIS      +I  +   G  +GIDFKGG  +           V       +  
Sbjct: 64  GRRKLWYGISGAIMAIAILSIIVRGFTFGIDFKGGTTVSFPRGDSQVTQVEEVFHNVVGS 123

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659
              S        +  V+++ +   +    ++ + +            P     +   V  
Sbjct: 124 DPESVVTVGSGASATVQIRSETLSNEQTEKLRDALFDAFHPKGADGKPSKKAISDAAVSE 183

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++ +K ++ +++  + + IYI +R++ Y  + AI  +I D+T T G ++L G E  
Sbjct: 184 TWGGQITKKAVIALVVFLVLVAIYITVRYERYMTISAIAAMIFDLTVTAGVYSLVGFEVT 243

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D V+V+D++ +N     +TT  +F +  + ++N+T  RS+ TS+
Sbjct: 244 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAVNQTFMRSINTSL 303

Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + + VL +      + G   +   A+    GI+V   SSIF A P+L+ + +   
Sbjct: 304 ISVLPVLSLMVVAVWLLGVGTLKDLALVQLIGIIVGTYSSIFFATPLLVTLRERTE 359


>gi|32267147|ref|NP_861179.1| preprotein translocase subunit SecF [Helicobacter hepaticus ATCC
           51449]
 gi|32263200|gb|AAP78245.1| preprotein translocase subunits SecF [Helicobacter hepaticus ATCC
           51449]
          Length = 323

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 155/285 (54%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+    +G+ IS L  I S  LL   G N GIDF GG  + +   +P  LS +R  L 
Sbjct: 10  YDFVTYSSYGLVISTLLIIASFVLLGIKGFNLGIDFAGGSIVQIQYTKPAPLSKIRELLA 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             +    S  +  G K  ++        SV +     +V   + E      ++  + VGP
Sbjct: 70  QDERFKNSQVSEFGSKEEVLLKIPYIPTSVNEDISHSIV--ALLEPSGHFELRRVDSVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL + GI+ +  + IAM+IYI  R++W F+L  +  L+ D+    G   L G++FN
Sbjct: 128 KVGDELKQNGIIALTFALIAMMIYISFRYEWRFSLAGVLALVHDVIIVSGVVILAGVDFN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+LT+IGYS+ND ++++DR+R+ M +       + +I+++++ TL R++ TS+  
Sbjct: 188 LDVLAALLTIIGYSINDTIIIFDRIREQM-MIKRQKDMKYVINEAVSCTLSRTILTSLTV 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           F  VL + ++GG +I  F++PM  G+++A  SS+F+A  + L   
Sbjct: 247 FFVVLTLYLFGGEIIVGFSLPMLVGVIIATCSSMFVAPRLALMFG 291


>gi|296104104|ref|YP_003614250.1| aminoglycoside/multidrug efflux system [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058563|gb|ADF63301.1| aminoglycoside/multidrug efflux system [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 1037

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G+L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGVLAI-----TSLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLSFTAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPNKLNSFQMTATDVTDAIKSQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           V          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAQLVLDRLDELSHYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRQATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+ + +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCVTLLKPLHKGEQHGQKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W +   +L        L         + +G     V
Sbjct: 516 NRMFNRSAARYETAVGKVLHRSLRWMMIYVVLLGGMVWLFLHLPTSFLPQEDRGMFITSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++ ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVQKVEQYFFTKEKDNVVSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K    +    +  
Sbjct: 636 RDTKTGTSFAIIERATKAFSRIKEARVFA 664



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     +++   P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATAQLVLDRLDELSHYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    +S R    KS+ +
Sbjct: 380 FAVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRQATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   + + + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCVTLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 82/269 (30%), Gaps = 13/269 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  D      +   A   V  S   S+        +   N       +         
Sbjct: 776  PYRMLPDDINRWYVRNNAGGMVPFSAFASSHWESGSPRLERYNGYSAVEIVGEAAPGVST 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++         T  + +              +  +  S + + + +   
Sbjct: 836  GTAMDTMEKLVQQLPAGFGLQWTAMSYQERLSGAQAP----ALYAL--SLLVVFLCLAAL 889

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      +  + L +   L    + G+E ++     +LT+IG S  + +++ +   +
Sbjct: 890  YESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
               +             +  + L   + TS+A    VLPMA   G+      +    +  
Sbjct: 950  ---MNAKGHELMASTLHACRQRLRPILMTSLAFVFGVLPMATSSGAGSSSQHAVGTGVMG 1006

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G++ A   +I+      + +        R
Sbjct: 1007 GMISATILAIYFVPLFFVLVRRRFPLKER 1035


>gi|329120264|ref|ZP_08248932.1| protein-export membrane protein SecF [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327462605|gb|EGF08928.1| protein-export membrane protein SecF [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 311

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 171/304 (56%), Gaps = 3/304 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM+       IS+   I ++  L T GLNY ++F GG  + V   +  D
Sbjct: 1   MELFRFKRDIPFMKYGRLTTFISLATFILAVFFLATKGLNYSVEFTGGTVMEVEYAQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR +L++L +G++  Q  +  ++ ++RL  +PG + AQ  +     + + +    +T
Sbjct: 61  VDKVRGSLDALNLGEVQVQTVNSNRHLMIRLPNKPGTTTAQ--LSNQTMEILKKNDASAT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ + +    ++IY+ +RF+W FA+ AI   + D+   LG 
Sbjct: 119 LRQVEFIGPQVGDELVHNGLIALGMVVAGIIIYLSMRFEWRFAVSAIIANMHDVVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FALF  EF+LT +A VL ++GYSVN+ VVV+DR+R+N +     + +  ++ID +I  T+
Sbjct: 179 FALFQWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENFRKPNMRNHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M ++GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLLFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLLFGLSREN 298

Query: 830 NARI 833
            AR+
Sbjct: 299 IARV 302


>gi|262042088|ref|ZP_06015264.1| inner membrane multidrug efflux protein BpeB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259040569|gb|EEW41664.1| inner membrane multidrug efflux protein BpeB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 1037

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 180/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  L        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLNNLMYMSSQSSATGQATITLSFTAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTLAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQMTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVTLGDAATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAVLYACGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPVKPGESHERTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W +   +L        L        ++ +G     V
Sbjct: 516 NRTFNRSASRYETFVGKILHRSLRWMLIYVVLLGGMVFLFLHLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++  +   ++ +  + E  F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVQKAEDYFLNNEKQNVESVFATVGSGPGGNGQNVARMFVRLKDWDQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDPQTGTSFAIIERATKAFNQINEARVIA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L    +     +  D   +      + L        + +A    +     ++ +  P 
Sbjct: 260 VTLGDAATVEMGAEKYDYLSRYNRQPASGLGIKLASGANEMATAERVINRLNELAQFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FAVLYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 67.4 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 74/253 (29%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +          + G    + ++G     +  +  PG S      +       
Sbjct: 789  VRNSSGTMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGISTGTAMDMMEKLAAQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  + +     +   W      +  + L
Sbjct: 849  LPTGFGLEWTAMSYQERLSGAQAPALYAISLLVVFLCLA---ALYESWSVPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    +  +E ++     +LT+IG S  + +++ +   +   L            
Sbjct: 906  GVIGALLATWMRELENDVYFQVGLLTVIGLSAKNAILIVEFANE---LNEKGQDLLSATL 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +  + L   + TS+A    VLPMA     G     +    +  G++ A   +IF     
Sbjct: 963  SACRQRLRPILMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLF 1022

Query: 820  LLFIYDWRAKNAR 832
             + +        R
Sbjct: 1023 FVLVRRRFPLKER 1035


>gi|115350664|ref|YP_772503.1| preprotein translocase subunit SecD [Burkholderia ambifaria AMMD]
 gi|115280652|gb|ABI86169.1| protein-export membrane protein SecD [Burkholderia ambifaria AMMD]
          Length = 673

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 159/516 (30%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+   I    + ++   + ++F+D++  E+    +   +  +           
Sbjct: 160 ASDARALLRDRNIRDGGVSRVDQSVVVNFSDAQTAEDARKVLAASVTELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ GS RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++ +V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKEVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRSVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+++   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKKLK 606



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGLVNLWYGGRKKLKSL 608



 Score = 40.8 bits (93), Expect = 0.88,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +    +   + ++ LD            
Sbjct: 3   RYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQ----VSSGKATVKLD------------ 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                +  L      L S   K     F        I +   D+  +  + D +   L  
Sbjct: 47  -----STTLTQVESALASAQIKPDDITFENTASNANIRVRLKDTDTQLRVKDLLQKSLNA 101


>gi|71282618|ref|YP_267865.1| preprotein translocase subunit SecD [Colwellia psychrerythraea 34H]
 gi|71148358|gb|AAZ28831.1| protein-export membrane protein SecD [Colwellia psychrerythraea
           34H]
          Length = 615

 Score =  206 bits (524), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 158/520 (30%), Positives = 278/520 (53%), Gaps = 38/520 (7%)

Query: 33  DRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
              PS +       + LGLDL GG   ++EV+  + +N        + R  L+ E I   
Sbjct: 107 PNTPSWLAAIGGKPMKLGLDLSGGVSFLMEVNMKEAINKAKIGMVSDFRGDLRNEKIRYR 166

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
           S++++ N + + F      E     +    + +           L        ++  +++
Sbjct: 167 SVKEVNNSVVVVFRKIEDLEAGQSLLKQRYRDLL----------LSTDDDTLTLTAKMTE 216

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
             + ++  +A++Q++ IIR R++++G++E  +QR G   I+I+LPG QD ++ +++L  T
Sbjct: 217 PKLKEIREYALQQNITIIRNRVNELGVAEPLVQRQGKKHIVIELPGVQDTAKAKEILNAT 276

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           A + F  V         + G          D DG   L++ ++ ++G H+  A + FD  
Sbjct: 277 ATIEFRLVDTEGDLSNALNGRIPANSILLTDKDGRPSLLKKRIMLTGDHITDAKSGFDEY 336

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------LTAP 306
           + +P V+IS D  G  +    T+ NIGKP+A V                       + + 
Sbjct: 337 S-RPQVNISLDSAGGSKMSSGTKSNIGKPMATVFIEYKATDKKDAEGNIIFEKQQEIISV 395

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+      +I+G  +   A  LA +LRAG+L   + IVEER VG  LG++++  G  
Sbjct: 396 ATIQSRLGKTFRITGAGSAAEAHNLALLLRAGALIAPITIVEERTVGPTLGAENVRLGFE 455

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIG 425
           AI+ G  L+ +FM++ Y  +G+VA+ ++  N++L + ++S++  ATLTLP +AGIVL +G
Sbjct: 456 AILMGFGLVFIFMMIYYRAFGVVANLALGANLVLIVGVMSMIPGATLTLPGMAGIVLTVG 515

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +AVD+N+L+ ERIREE R+ +++  S+  G+  A+STI D+NIT LIA ++LF  G G V
Sbjct: 516 MAVDANVLIFERIREEIREGKTIQQSIHQGYDAAFSTIIDANITTLIAALILFAIGTGPV 575

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +GFA+T+ + I+ SMFT++   RA++  I   K+++ + I
Sbjct: 576 KGFAVTLSIGIITSMFTSVVGTRAVVNAIWGGKRLEKLPI 615



 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 113/327 (34%), Gaps = 6/327 (1%)

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           +  A+   I     + +      S               A+      S      S+    
Sbjct: 290 LSNALNGRIPANSILLTDKDGRPSLLKKRIMLTGDHITDAKSGFDEYSRPQVNISLDSAG 349

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              ++ G     G  +  +           +    +        +    ++ L +     
Sbjct: 350 GSKMSSGTKSNIGKPMATVFIEYKATDKKDAEGNIIFEKQQEIISVATIQSRLGKTFRIT 409

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
           G   A       +  +   ++   TI     VGP +  E +R G   +++    + I++ 
Sbjct: 410 GAGSAAEAHNLALLLRAGALIAPITIVEERTVGPTLGAENVRLGFEAILMGFGLVFIFMM 469

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           I ++  F + A   L  ++   +G  ++  G    L  +A ++  +G +V+  V++++R+
Sbjct: 470 IYYR-AFGVVANLALGANLVLIVGVMSMIPGATLTLPGMAGIVLTVGMAVDANVLIFERI 528

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      + +  I +  +      +  ++   I+ L +   G   +  FA+ ++ G
Sbjct: 529 REEIRE---GKTIQQSIHQGYDAAFSTIIDANITTLIAALILFAIGTGPVKGFAVTLSIG 585

Query: 805 IVVAASSSIFIAAPIL-LFIYDWRAKN 830
           I+ +  +S+     ++       R + 
Sbjct: 586 IITSMFTSVVGTRAVVNAIWGGKRLEK 612



 Score = 40.8 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++ +MI  IG L A P    +S   +               LRG     +E +
Sbjct: 4   KYPLWKTLMVAMIVAIGALYATPMLYGESPAVQVSG------------LRG-----VEAN 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                        D +++ L++  +   S+     ++   F ++  +    D +   L
Sbjct: 47  AA---------TLDSIKAQLEESNLSFASIALENGQVLTRFNNTEDQLKARDVLDDNL 95


>gi|156935043|ref|YP_001438959.1| preprotein translocase subunit SecD [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156533297|gb|ABU78123.1| hypothetical protein ESA_02894 [Cronobacter sakazakii ATCC BAA-894]
          Length = 604

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 170/538 (31%), Positives = 286/538 (53%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    + 
Sbjct: 88  FVVALNLAPATPRWLTAISAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 138

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+++G+   ++R+  N  +T+ F DS  ++     +T   +           
Sbjct: 139 NMDSLRSDLREKGLSWTNVRKADNYGVTIQFRDSDIRDAAVSYLTSRHR----------- 187

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             ++ +  +  +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI++
Sbjct: 188 DMVISSQGDNSLRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 247

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  +  +     G            +G   ++  +
Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNSSVDRSAAAAGRVPGDSEVKMTREGQPVVLYKR 307

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T+  D       V+IS D  G       T+DNI KP+A +      +  
Sbjct: 308 VILTGDHITDSTSGVDQYNMPQ-VNISLDSAGGNIMSNFTKDNIHKPMATLFVEYKDSGK 366

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                QA       I+G      A  L+ +LRAG+L   + IVE
Sbjct: 367 KDANGRSILVKQEEVINVATIQARLGQNFVITGIDNPNEARQLSLLLRAGALIAPIQIVE 426

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A +AGL + +LFMI+ Y K+GL+A  ++  N++L + ++SLL
Sbjct: 427 ERTIGPTLGMQNITQGLEACLAGLAVSILFMILFYKKFGLIATTALLANLVLIVGIMSLL 486

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE    +SV  ++D G+  A+S+IFD+N
Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSVQQAIDEGYRGAFSSIFDAN 546

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +T LI  ++L+  G GA++GFAIT G+ +  SMFTAI   RA++  +   K++  + I
Sbjct: 547 VTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 77/177 (43%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +      ++++ + +K  F L A T L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNITQGLEACLAGLAVSILFMILFYK-KFGLIATTALLANLVLIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  ID+           
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSVQQAIDEGYRGAFSSIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI    G+  +  ++I     I+  +Y  +  N 
Sbjct: 545 ANVTTLIKVIILYAVGTGAIKGFAITTGIGVATSMFTAIVGTRAIVNLLYGGKRINK 601


>gi|73537922|ref|YP_298289.1| hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134]
 gi|72121259|gb|AAZ63445.1| Hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134]
          Length = 1050

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 180/686 (26%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P+  P               +      
Sbjct: 8   RPIFAWVIALVIMLAGVLSI-----RSLPISQYPAIAPPTI---------AISVNYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + L +            +  IT++F      +    +V   L  
Sbjct: 54  AETVQDTVVQVIEQQLNGLDRLRYISSESNADGSMTITVTFEQGTNPDIAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      +++             + S  I+    D +  +    
Sbjct: 114 AQPLLPQEVQQQGIRVTKSVRNFLLIVGLISTDPKVTREDLSNYIVSNIQDPLSRTYGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGSQ-YAMRVWIDPAKLNSYQLTPLDVSNAIKAQNVQVASGQLGGLPAVQGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +               + +    +        +        +G          
Sbjct: 233 SVIGKTRL-------------QTSEQFGNILLKVNPDGSQVRLKDVAEVGLGGQDYNINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       A  +   T+         L          +          GS   
Sbjct: 280 QYNGQPASGIAVRLAAGANALETVRAIRKTLDTLEPFFPAGMKVVYPYDTSPVISGSIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVKTLMEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGYTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEAARRSMGQIQGALVGIAMVLSAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  S+++S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVLVALILTPALCATMLQPIEKGDHGENKGGFFGWFNRK 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +S        ++    R   + +    +                  + +G +   V   
Sbjct: 520 FISTTQGYERGVSTILKRRLPFVLIYVAILVAMGFLFTRIPTSFLPEEDQGVLYAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L  ++   +  +    +  F V      G          ++K       
Sbjct: 580 AGATAERTQKVLVQMREYLLKEEGGVVDSLFTVNGFNFAGRGQNSGLAFILLKPWEERTG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++ +      +            
Sbjct: 640 DNTSVFDLAARAQRKFASFRDSMSFA 665



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q  +I+ Q      + +        +++   R +      +    
Sbjct: 258 SQVRLKDVAEVGLGGQDYNINAQYNGQPASGIAVRLAAGANALETVRAIRKTLDTLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PAGMKVVYPYDTSPVISGSIHEVVKTLMEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFGVLAAFGYTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEAARRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      LPMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSSMVLSVLVALILTPAL 492



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 76/253 (30%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +            G    Q ++G     V  +   G S  +         K 
Sbjct: 790  VRNDKGDMVPFSAFAEGKWGFGSPKLQRYNGVPAVEVLGEPAAGRSSGEAMKAIEEIMKQ 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  + +     +   W      +  + L
Sbjct: 850  MPAGVGYAWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +     Y       D   
Sbjct: 907  GVIGALLATMARGLSNDVFFQVGLLTTIGLSAKNAILIVEFAK---SQYEHGKGLVDAAI 963

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   V TS+A  + V P+A+    G     +    +  G++ A   +IF     
Sbjct: 964  EACRMRLRPIVMTSLAFMLGVFPLAISTGAGAGSQHAIGTGVIGGMITATVLAIFWVPLF 1023

Query: 820  LLFIYDWRAKNAR 832
             + +    A+  +
Sbjct: 1024 FVAVNSLFARKRK 1036


>gi|325523863|gb|EGD02088.1| preprotein translocase subunit SecD [Burkholderia sp. TJI49]
          Length = 673

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 158/516 (30%), Positives = 267/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ + I    + ++   + ++F+D++  E+    +   +  +           
Sbjct: 160 ASDARTLLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDARKALAASITELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ GS RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++  V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQVPVLLKKDVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FM+  Y  +G+++   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMVAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606



 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 VAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  I+   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608


>gi|330504697|ref|YP_004381566.1| preprotein translocase subunit SecD [Pseudomonas mendocina NK-01]
 gi|328918983|gb|AEB59814.1| preprotein translocase subunit SecD [Pseudomonas mendocina NK-01]
          Length = 622

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 160/526 (30%), Positives = 270/526 (51%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD D  ++   ++Y  E++S L+KE +
Sbjct: 107 NLAQTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSLLRKERV 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              SM +   +I L FADS   +     +             D +   +    ++ + + 
Sbjct: 167 RYRSMPESNGRIQLGFADSDSLDKAQRLIRKDYS--------DFELTTVERNGQQILQLG 218

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  I ++  ++I Q++  +R R++++G++E  +QR G+ RI+++LPG QD +  +++L
Sbjct: 219 LTQAKIAEIREYSIRQNLTTVRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAEAKRIL 278

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F      +            R+       +E ++ I+G  +  A A+FD    
Sbjct: 279 GKTANLEFRLQADFD-APRGATEAFGFREEGRPPVQLERELIITGDQVTDAQASFDENG- 336

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+I  D  G       TR+N+G+ +AV+   +      +                  
Sbjct: 337 RPQVNIRLDGHGGDLMNRATRNNVGRSMAVIFIEQKPVTRYVRQNVDGVEQEVAVSSFVE 396

Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG++
Sbjct: 397 EKKIISLATIQSALGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAE 456

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  +    +V + +F+I +Y  +G++A  ++  N++L + L+S +GATLTLP IAG
Sbjct: 457 NIAKGIASTEWAMVFVAIFIIAIYRFFGVLATVALAFNLVLLVGLMSAIGATLTLPGIAG 516

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE      V  ++  GF RAYS I DSN+T L+   +LF 
Sbjct: 517 IVLTLGMAVDANVLIFSRIREELANGLPVQRAIHEGFDRAYSAILDSNLTTLLVGGILFA 576

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I+ SMFTAI   R ++  I   + +K + I
Sbjct: 577 MGTGPVKGFAVTMSLGIVTSMFTAIMFTRGLVNLIFGGRNVKKLWI 622



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 91/250 (36%), Gaps = 6/250 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V      ++  V   +      +             +  Q++      Q    E+     
Sbjct: 374 VTRYVRQNVDGVEQEVAVSSFVEEKKIISLATIQSALGSQFRITGLNGQGESSELALLLR 433

Query: 643 TEIVPLSTIQNTE-IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +        E  +GP +  E I KGI     + + + I+I   +++ F + A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGAENIAKGIASTEWAMVFVAIFIIAIYRF-FGVLATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   +G  +  G    L  +A ++  +G +V+  V+++ R+R+ +      +  +  I
Sbjct: 493 FNLVLLVGLMSAIGATLTLPGIAGIVLTLGMAVDANVLIFSRIREELA---NGLPVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820
            +  +      + +++   +    +   G   +  FA+ M+ GIV +  ++I     ++ 
Sbjct: 550 HEGFDRAYSAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIVTSMFTAIMFTRGLVN 609

Query: 821 LFIYDWRAKN 830
           L       K 
Sbjct: 610 LIFGGRNVKK 619



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/389 (10%), Positives = 95/389 (24%), Gaps = 34/389 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  IGL+ ++PN  P     +   A     I              + D
Sbjct: 4   KYPLWKYLLILSVLAIGLVYSIPNLYPDDPAVQISGASSALSIQ-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
            D                      +   S+ +      +       +    D V   L  
Sbjct: 51  VDRASKALTDA----------GIAVKAASIDERGRGGLIRLIKQDDQLPAKDIVRRALGD 100

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174
                LN+       + +       +    +       +  +  A++   ++    I  +
Sbjct: 101 DYVVALNLAQTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMDKALDVRRKVYEGEIKSL 160

Query: 175 GISESTIQRLG---SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
              E    R     + RI +         + ++L+           +  N ++    G+ 
Sbjct: 161 LRKERVRYRSMPESNGRIQLGFADSDSLDKAQRLIRKDYSDFELTTVERNGQQILQLGLT 220

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             + ++  +Y +   +      +N           +    I  +  G +   E  R    
Sbjct: 221 QAKIAEIREYSIRQNLTTVRNRVNELGVAEPLVQRQGASRIVVELPGVQDTAEAKRILGK 280

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                        AP         + +      +E   I+       +          + 
Sbjct: 281 TANLEFRLQADFDAPRGATEAFGFREEGRPPVQLERELIITGDQVTDAQASFDENGRPQV 340

Query: 352 VGADLGSDSIYKGTCA-IVAGLVLIVLFM 379
                G              G  + V+F+
Sbjct: 341 NIRLDGHGGDLMNRATRNNVGRSMAVIFI 369


>gi|88703680|ref|ZP_01101396.1| Protein-export membrane protein secD [Congregibacter litoralis
           KT71]
 gi|88702394|gb|EAQ99497.1| Protein-export membrane protein secD [Congregibacter litoralis
           KT71]
          Length = 631

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 163/530 (30%), Positives = 270/530 (50%), Gaps = 37/530 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++ +  P  +       + LGLDL GG H  LEVD    +   ++ Y +  +  L++E I
Sbjct: 107 NLAETTPDWLTGVGGQPMKLGLDLSGGVHFKLEVDTAAAIERRMEYYLNATKRSLREERI 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
             F        +   F     +E     +      +      +  + L+           
Sbjct: 167 RGFVGLDGDRAVLGRFRSEDLREQARSLIADAFPELLLDRVDEEDEFLIF--------AR 218

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++   +D++I +++ Q++  +R R++++G+SE  +QR G +RI+++LPG QD +  +++L
Sbjct: 219 MTDVTVDEIIDYSVSQNLTTLRNRVNELGVSEPLVQRQGRNRIVVELPGIQDTAEAKRIL 278

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF-LRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           G  A + F  V   ++         +   D  G    +E  V I+G  ++ A A+FD   
Sbjct: 279 GKVANLEFRLVANADAPAAERQRFEYRSEDRQGATEYLERDVIITGERVSNAQASFDQNG 338

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301
            +P V IS D  G       TR+NI + +                         V  D +
Sbjct: 339 -RPNVQISLDSEGGTLMSRATRNNIKRRMGVLFIERKYRTRYEMDENGEEVAVKVPYDEK 397

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    + Q+    + QI+G      +  LA MLRAG+L   +  VEER VG  LG+++I
Sbjct: 398 KLLTAPVIQSALGAQFQITGLDNPLESSELALMLRAGALAAPITFVEERTVGPSLGAENI 457

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G  ++  GL L+VLFM++ Y  +GL A  ++  N++L +A++SLLGATLTLP IAGIV
Sbjct: 458 RLGVKSVQYGLALVVLFMVLYYRVFGLCAVTALTANLVLLVAIMSLLGATLTLPGIAGIV 517

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+  RIREE     S   ++  GF RA +TI D+NIT LI  V+L+  G
Sbjct: 518 LTVGMAVDANVLIFSRIREELGNGLSPQMAIHSGFERAVATILDANITTLIVAVILYAVG 577

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
            G V+GFA+T+ + I+ SMFTAI   RA++  I   ++++++ I  + + 
Sbjct: 578 TGPVKGFAVTLSVGIITSMFTAIMGTRALVNLIYGGRRVETLAIGRIPKM 627



 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 96/261 (36%), Gaps = 5/261 (1%)

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            N      G + +        ++      +      D             +  Q+Q    
Sbjct: 359 RNNIKRRMGVLFIERKYRTRYEMDENGEEVAVKVPYDEKKLLTAPVIQSALGAQFQITGL 418

Query: 629 VAQTRVLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                  E  +  +   +    T      VGP +  E IR G+  V      +++++ + 
Sbjct: 419 DNPLESSELALMLRAGALAAPITFVEERTVGPSLGAENIRLGVKSVQYGLALVVLFMVLY 478

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F L A+T L  ++   +   +L G    L  +A ++  +G +V+  V+++ R+R+ 
Sbjct: 479 YRV-FGLCAVTALTANLVLLVAIMSLLGATLTLPGIAGIVLTVGMAVDANVLIFSRIREE 537

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +      +S +  I       +   +  ++   I  + +   G   +  FA+ ++ GI+ 
Sbjct: 538 L---GNGLSPQMAIHSGFERAVATILDANITTLIVAVILYAVGTGPVKGFAVTLSVGIIT 594

Query: 808 AASSSIFIAAPILLFIYDWRA 828
           +  ++I     ++  IY  R 
Sbjct: 595 SMFTAIMGTRALVNLIYGGRR 615



 Score = 38.9 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 13/43 (30%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44
          R   W  ++  ++   G L A PN        +         I
Sbjct: 4  RYPIWKYLIVLIVVIGGALYASPNLYAPDPALQIAGESSGTMI 46


>gi|261868465|ref|YP_003256387.1| preprotein translocase subunit SecD [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413797|gb|ACX83168.1| protein-export membrane protein SecD [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 616

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 164/524 (31%), Positives = 286/524 (54%), Gaps = 39/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     N +  GLDLRGG   ++EVD +  ++   +   D LR+ L+KE  
Sbjct: 104 NLAPATPKWLSSIGGNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRKEKY 163

Query: 87  GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              +++ I N  T ++  +S             L  V   L        +  T+E  +S+
Sbjct: 164 QYSAIKSIDNFSTGVTLTNSEQ-----------LSDVQRYLRKQHPNLDVSVTSENTLSL 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS + +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+++LPG QD +R +++
Sbjct: 213 GLSDSVLNEARESAIEQNLSILRKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  + + +    G+         D +    ++  +  + G H+  A++ 
Sbjct: 273 LGATATLEFRIVNASANLEAAARGMVPSDSEVKYDRNNRPVVLYKRAVLGGEHITNASSG 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D  T  P V ++ D  G     + TR N+ KP+A +      +                
Sbjct: 333 VDQNTSLPQVSVTLDSEGGEIMSQTTRLNLKKPMATLYVEYKDSGKKDENGKTILQKHEE 392

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q     + QI+G  +   A  LA +LR+G+L   + IVEER +G  LG+ ++ 
Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVE 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A   GL+++V FM++ Y K+G++A+ ++  N++L + L+SLL  ATLT+P IAGIV
Sbjct: 453 QGLQASFWGLMIVVAFMVIYYRKFGIIANIALIANIVLLVGLISLLPGATLTMPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G++VD+N+L+ ERI+EE R  + +  +++ G+S A+S+IFD+N+T ++  V L+  G
Sbjct: 513 LAVGMSVDANVLIFERIKEEIRNGRPIQQAINEGYSGAFSSIFDANLTTILTAVALYAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G ++GFAIT+ L I ISMFTAI+  RA++ F+   K++  + I
Sbjct: 573 TGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKRIDKLSI 616



 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +G+       + ++ ++ I ++  F + A   LI +I   +G  +L  
Sbjct: 441 TIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYR-KFGIIANIALIANIVLLVGLISLLP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +G SV+  V++++R+++ ++        +  I++  +        
Sbjct: 500 GATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIR---NGRPIQQAINEGYSGAFSSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   ++ + +   G   I  FAI ++ GI ++  ++I     I+ F+Y  + 
Sbjct: 557 ANLTTILTAVALYAVGTGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKR 610



 Score = 43.9 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   +  IG+L ALPN   +    +                RG         
Sbjct: 4   RYPLWKNLMVIFVVAIGILYALPNLYGEDPAVQISGT------------RG--------- 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         +++S LK   +   S+      I + F ++  +    DK+T  L
Sbjct: 43  -----QEANSAVLSDVQSVLKDNNLTTKSIVLESGSILVRFNNTDTQLLAKDKITEKL 95


>gi|254513991|ref|ZP_05126052.1| protein-export membrane protein SecD [gamma proteobacterium NOR5-3]
 gi|219676234|gb|EED32599.1| protein-export membrane protein SecD [gamma proteobacterium NOR5-3]
          Length = 631

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 161/525 (30%), Positives = 268/525 (51%), Gaps = 37/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++ +  P  +       + LGLDL GG H  LEVD    V   ++ Y +  +  L++E +
Sbjct: 107 NLAETTPPWLTGLGGQPMKLGLDLSGGVHFKLEVDTVAAVERRMEYYLNATKRALREERV 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
             F        +   FA    +E     +      +      +  + ++           
Sbjct: 167 RGFVGLDGDRAVVGRFATEDLREQARSLIGDAFPELLLDRVDEEDEFMIY--------AR 218

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++   +D++I +++ Q++  +R R++++G+SE  +QR G +RI+++LPG QD +  +++L
Sbjct: 219 MTDQTVDEIIDYSVSQNLTTLRNRVNELGVSEPLVQRQGRNRIVVELPGIQDTAEAKRIL 278

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLR-DSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           G  A + F  V   ++         +   D  G    +E  + I+G  ++ A A+FD   
Sbjct: 279 GKVANLEFRLVANADAPAAERQRFEYRSADRQGMTEYLERDIIITGERVSNAQASFDQNG 338

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301
             P V IS D  G       TR+N+ + +                         V  D +
Sbjct: 339 M-PNVQISLDSEGGSLMSRATRNNVKRRMGVLFIERKYRTRYEKDESGQEVAIKVPYDEK 397

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    + Q+    + QI+G      +  LA MLRAG+L   +  VEER VG  LG+++I
Sbjct: 398 TLLTAPVIQSALGAQFQITGLDNPLESSELALMLRAGALAAPITFVEERTVGPSLGAENI 457

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G  ++  GL L+VLFM++ Y  +GL A  ++  N++L +A++SLLGATLTLP IAGIV
Sbjct: 458 RLGVKSVQYGLALVVLFMVIYYRVFGLCAVTALTANLVLLVAIMSLLGATLTLPGIAGIV 517

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+  RIREE     S   ++  GF RA +TI D+NIT LI  V+L+  G
Sbjct: 518 LTVGMAVDANVLIFSRIREELGNGLSPQMAIHSGFERAVATILDANITTLIVAVILYAVG 577

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            G V+GFA+T+ + I+ SMFTAI   R+++  I   +++K++ I 
Sbjct: 578 TGPVKGFAVTLSVGIITSMFTAIMGTRSLVNLIYGGRRVKTLSIG 622



 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 95/261 (36%), Gaps = 5/261 (1%)

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            N      G + +        +       +      D             +  Q+Q    
Sbjct: 359 RNNVKRRMGVLFIERKYRTRYEKDESGQEVAIKVPYDEKTLLTAPVIQSALGAQFQITGL 418

Query: 629 VAQTRVLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                  E  +  +   +    T      VGP +  E IR G+  V      +++++ I 
Sbjct: 419 DNPLESSELALMLRAGALAAPITFVEERTVGPSLGAENIRLGVKSVQYGLALVVLFMVIY 478

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F L A+T L  ++   +   +L G    L  +A ++  +G +V+  V+++ R+R+ 
Sbjct: 479 YRV-FGLCAVTALTANLVLLVAIMSLLGATLTLPGIAGIVLTVGMAVDANVLIFSRIREE 537

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +      +S +  I       +   +  ++   I  + +   G   +  FA+ ++ GI+ 
Sbjct: 538 L---GNGLSPQMAIHSGFERAVATILDANITTLIVAVILYAVGTGPVKGFAVTLSVGIIT 594

Query: 808 AASSSIFIAAPILLFIYDWRA 828
           +  ++I     ++  IY  R 
Sbjct: 595 SMFTAIMGTRSLVNLIYGGRR 615



 Score = 39.3 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 13/43 (30%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44
          R   W  ++  ++   G L A PN        +         I
Sbjct: 4  RYPIWKYLIVLIVVLGGALYAAPNLYAPDPALQVAGESSGTLI 46


>gi|167629911|ref|YP_001680410.1| protein-export membrane protein secf [Heliobacterium modesticaldum
           Ice1]
 gi|167592651|gb|ABZ84399.1| protein-export membrane protein secf [Heliobacterium modesticaldum
           Ice1]
          Length = 292

 Score =  206 bits (524), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 86/288 (29%), Positives = 148/288 (51%), Gaps = 7/288 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           ++ +  R     +S+L  I  +  L   GLN GIDF GG  L +   R V +  VR  L+
Sbjct: 1   MEIIGRRKIWYALSLLILIPGLISLLLQGLNLGIDFTGGSMLQLKFERAVTVENVRDVLD 60

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
              +G  + Q  +G                 +      +   +   +   T++  E VGP
Sbjct: 61  KANVGSSTIQLAEGN-------SVIVRTHTLEQSQRNELVGAMKTQLGDLTVERDENVGP 113

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            + +EL R  ++ ++++ I M+ YI  RF++ FA+ AI  L+ DI    G F++F IE +
Sbjct: 114 VVGKELTRNALLALLLAIIGMVAYISFRFEFKFAVAAIIALLHDILVVTGLFSIFQIEVD 173

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + VAA+LT+ GYS+ND +V++DR+R+N++      +   L+++S+ ETL RS+ T +  
Sbjct: 174 SSFVAAILTVFGYSINDTIVIFDRIRENLRKKKKDENLDALVNRSVKETLTRSINTVLTV 233

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              ++ +  WGG+    F + M  G++  A SSIF A+P+   +  W 
Sbjct: 234 IFVLVALLFWGGNTTKVFTLAMLLGVIAGAYSSIFNASPVWYDLKQWE 281


>gi|302187781|ref|ZP_07264454.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae 642]
          Length = 1044

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    +         F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTARTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  V+
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPAL 492



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V  S   S   S     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSAGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEVLGTPAPGYSSGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLVDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +        +
Sbjct: 1009 ITAVILAIFWVPLFFVTVSGLFKSKQK 1035


>gi|309378987|emb|CBX22440.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 311

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS+L  I ++  L T GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMGYGKLTTFISLLTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYRQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L++GDI  Q     K+ ++RL  + G + AQ  +   V   + +  P   
Sbjct: 61  VNKMRDRLDTLKMGDIQVQALGTNKHIMIRLPNKEGVTSAQ--LSNRVMDLLKKDNPDVA 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ + +    +++Y+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGVVVAGIIVYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +  +    +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSREN 298

Query: 830 NAR 832
             R
Sbjct: 299 IGR 301


>gi|308185879|ref|YP_003930010.1| Protein-export membrane protein secD [Pantoea vagans C9-1]
 gi|308056389|gb|ADO08561.1| Protein-export membrane protein secD [Pantoea vagans C9-1]
          Length = 615

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 165/537 (30%), Positives = 287/537 (53%), Gaps = 46/537 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L           +    + LGLDLRGG H ++EVD D  ++   +  
Sbjct: 100 VVALNLAPATPRWLT---------MLSAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQN 150

Query: 74  SDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
           +D LRS L+ + I   ++ +I N  + + F D+  ++     ++   Q            
Sbjct: 151 ADTLRSDLRTKNIPYTNVNKIANYGVEIRFRDAASRDAAISWLSSRHQ-----------D 199

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++ ++    +   +S   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++
Sbjct: 200 LVINSSGSDALRATMSDARLSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVE 259

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V  +        G            DG   ++  +V
Sbjct: 260 LPGIQDTARAKEILGATATLEFRLVNTSVDPTAAASGRVPGDSEVKDMRDGQPVVLYKRV 319

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            ++G H+  +T++   + ++P V+IS D  G       T+DNIGKP+A +      +   
Sbjct: 320 ILTGDHITDSTSS-MDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGKK 378

Query: 307 -----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                               Q+      +I+G      A  L+ +LRAG+L   + IVEE
Sbjct: 379 DANGRSILVKQEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEE 438

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  +G  +I +G  A + GL+  +LFM+V Y K+GL+A  ++ +N++L + ++SLL 
Sbjct: 439 RTIGPTMGQQNITQGLEACLWGLLASILFMVVFYKKFGLIATSALLVNLVLIVGIMSLLP 498

Query: 410 -ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANV 558

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LI  ++L+  G G+++GFAIT  + I  SMFTAI   RA++  +   K++  + I
Sbjct: 559 TTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIIGTRAIVNLVYGGKRINKLSI 615



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 82/177 (46%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP + ++ I +G+   +   +A ++++ + +K  F L A + L++++   +G  +L  
Sbjct: 440 TIGPTMGQQNITQGLEACLWGLLASILFMVVFYK-KFGLIATSALLVNLVLIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI  A GI  +  ++I     I+  +Y  +  N 
Sbjct: 556 ANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIIGTRAIVNLVYGGKRINK 612


>gi|260913705|ref|ZP_05920181.1| protein-export membrane protein SecD [Pasteurella dagmatis ATCC
           43325]
 gi|260632244|gb|EEX50419.1| protein-export membrane protein SecD [Pasteurella dagmatis ATCC
           43325]
          Length = 616

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 158/524 (30%), Positives = 279/524 (53%), Gaps = 39/524 (7%)

Query: 30  SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       +  GLDLRGG   ++E+D +  +N   +   D LR+ L+KE  
Sbjct: 104 NLAPATPKWLTSIGAYPMKWGLDLRGGVRFLMEIDMNSALNKRQEQLQDTLRTQLRKEKY 163

Query: 87  GVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S++        ++       ++    +      +N           + T +   + +
Sbjct: 164 QYTSIKAAEGFSTQITLLKPEQLDDAQRFLRKQHHDLN-----------ITTLSNNTLLL 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS N +++    AIEQ++ I+R+R+ ++G+SE+ IQR G+ RI+++LPG QD +R +++
Sbjct: 213 TLSDNALNEARESAIEQNLTILRKRVSELGVSEAVIQRQGAERIVVELPGVQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N +      G          D  G   ++  +  + G H+  A++ 
Sbjct: 273 LGATATLEFRLVNENVNLDSASRGFIPADSEVKLDRSGRPIVLYKRAVLGGEHITNASSG 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D +T +P V ++ D  G     + TR N+ KP+A +      +                
Sbjct: 333 LDQQTSRPQVSVTLDSEGGEIMSQTTRLNLKKPMATLYVEYKDSGKKDENGKSILEKHEE 392

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q     + QI+G  +   A  LA +LR+G+L   + IVEER +G  LG++++ 
Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEALNLAVLLRSGALIAPIQIVEERTIGPSLGAENVR 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A   GLV +V+F+   Y K+G++A+ ++  N+IL + L+SLL  ATL++P IAGIV
Sbjct: 453 QGLEASFWGLVAVVIFVAFYYRKFGMIANVALIANIILVVGLMSLLPGATLSMPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+++D+N+L+ ERI+EE R  + V  +++ G+S A+++IFD+N+T ++  ++L+  G
Sbjct: 513 LSVGMSIDANVLIFERIKEEIRNGRPVQQAINEGYSGAFTSIFDANLTTILTAIILYAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G V+GFAIT+ L + ISMFTAI   RA++ F+   K++  + I
Sbjct: 573 AGPVKGFAITLALGVAISMFTAIVGTRAIVNFLYGGKRINKLSI 616



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 85/177 (48%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  E +R+G+       +A++I++   ++  F + A   LI +I   +G  +L  
Sbjct: 441 TIGPSLGAENVRQGLEASFWGLVAVVIFVAFYYR-KFGMIANVALIANIILVVGLMSLLP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G S++  V++++R+++ ++        +  I++  +        
Sbjct: 500 GATLSMPGIAGIVLSVGMSIDANVLIFERIKEEIR---NGRPVQQAINEGYSGAFTSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   +  FAI +A G+ ++  ++I     I+ F+Y  +  N 
Sbjct: 557 ANLTTILTAIILYAVGAGPVKGFAITLALGVAISMFTAIVGTRAIVNFLYGGKRINK 613



 Score = 38.9 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF 35
          R   W  IL  +   +G+L +LPN   +    + 
Sbjct: 4  RYPLWKNILVILTIIVGVLYSLPNLYGEDPAVQI 37


>gi|237798655|ref|ZP_04587116.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021508|gb|EGI01565.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 1044

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 68/687 (9%), Positives = 184/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKSAITAQNVQVSSGQLGGLPAISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    K+        F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      +L     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYVLICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERTS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  ++
Sbjct: 640 ENSVFELAKRAQGYFFSLRDAMVFAIV 666



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   +   V  S   S   S     +S  N    +  L           
Sbjct: 778  RMKPEDLKKWYVRNSSGEMVPFSAFASGKWSYGSPKLSRYNGVAAEEILGTPAPGYSSGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLTDSAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + I        +
Sbjct: 1009 ITAVILAIFWVPLFFVSISGLFKSKQK 1035


>gi|304395471|ref|ZP_07377354.1| protein-export membrane protein SecD [Pantoea sp. aB]
 gi|304356765|gb|EFM21129.1| protein-export membrane protein SecD [Pantoea sp. aB]
          Length = 604

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 163/518 (31%), Positives = 283/518 (54%), Gaps = 37/518 (7%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
            R+ S +    + LGLDLRGG H ++EVD D  ++   +  +D LRS L+ + I   ++ 
Sbjct: 99  PRWLSMLSAEPMKLGLDLRGGVHFLMEVDMDTALSKLQEQNADTLRSDLRTKNIPYTTVN 158

Query: 93  QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +I N  + + F D+  ++     ++   Q             ++ ++    +   +S   
Sbjct: 159 KIANYGVEIRFRDAASRDAAISWLSSRHQ-----------DLVINSSGSDALRATMSDAR 207

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++LG TA 
Sbjct: 208 LSEAREYAVQQNITILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATAT 267

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  +        G            DG   ++  +V ++G H+  +T++   + +
Sbjct: 268 LEFRLVNTSVDPTAAASGRVPGDSEVKDMRDGQPVVLYKRVILTGDHITDSTSS-MDEYN 326

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
           +P V+IS D  G       T+DNIGKP+A +      +                      
Sbjct: 327 QPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRSILVKQEEVINVAN 386

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  +G  +I +G  A 
Sbjct: 387 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGQQNITQGLEAC 446

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GL+  +LFM+V Y K+GL+A  ++ +N++L + ++SLL  ATLT+P IAGIVL + +A
Sbjct: 447 LWGLLASILFMVVFYKKFGLIATSALLVNLVLIVGVMSLLPGATLTMPGIAGIVLTLAVA 506

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  ++L+  G G+++G
Sbjct: 507 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 566

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FAIT  + I  SMFTAI   RA++  +   K++  + I
Sbjct: 567 FAITTAIGIATSMFTAIIGTRAIVNLVYGGKRINKLSI 604



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 82/177 (46%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP + ++ I +G+   +   +A ++++ + +K  F L A + L++++   +G  +L  
Sbjct: 429 TIGPTMGQQNITQGLEACLWGLLASILFMVVFYK-KFGLIATSALLVNLVLIVGVMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +         V 
Sbjct: 488 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +   G   I  FAI  A GI  +  ++I     I+  +Y  +  N 
Sbjct: 545 ANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIIGTRAIVNLVYGGKRINK 601


>gi|193222221|emb|CAL60533.2| Protein-export membrane protein SecF [Herminiimonas arsenicoxydans]
          Length = 315

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 91/304 (29%), Positives = 159/304 (52%), Gaps = 3/304 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                     I FMR       IS+L  + ++  L   GL+  I+F GG  + +   +P 
Sbjct: 1   MMEFFRIKKDIPFMRHALIFNVISVLTFVAAVFFLVHKGLHLSIEFTGGTVMEITYPKPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++  VR+ L  L   D+  Q+F   ++ L+RL  Q   + AQ  V E V   +       
Sbjct: 61  NIEGVRTKLGELGYTDMQVQSFGTAQDVLIRLPVQQNVNTAQ--VSERVMTALKAQDETV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           +++  E VGP++  EL   G++ + +  I ++IY+ IRF+W +A+ AI   + D+   LG
Sbjct: 119 SLKRVEFVGPQVGEELTHDGLMAMGMLVIGVMIYLAIRFEWKYAVAAIFANLHDVVIILG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINET 768
           FFA F  EF+LT +A +L ++GYSVN+ V+V+DR+R+  +      ++  D+++ +I  T
Sbjct: 179 FFAFFQWEFSLTVLAGILAVLGYSVNESVIVFDRVRETFRDRKHGKMAVADVMNHAITGT 238

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + R++ T  +  + VL M   GG  +  FA+ +  GI     SS+F+AA + +++   R 
Sbjct: 239 ISRTLITHGSTQLMVLSMFFLGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKRE 298

Query: 829 KNAR 832
              +
Sbjct: 299 DLIK 302


>gi|291277219|ref|YP_003516991.1| protein-export membrane protein [Helicobacter mustelae 12198]
 gi|290964413|emb|CBG40263.1| protein-export membrane protein [Helicobacter mustelae 12198]
          Length = 323

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/294 (30%), Positives = 158/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                      F+    +G+  S L  + ++ L+F  G   GIDF GG    +  ++P  
Sbjct: 1   MEFFKKVRIFDFVAYSTYGLIFSTLVILGALALIFFKGFVPGIDFAGGSTAQIRYDKPAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +S +R  L+  +    S  +  G K         P       + L  +  ++ +      
Sbjct: 61  ISQIRERLDRAEGFRGSQVSEYGSK--FEVQIKIPYTETLLGKNLNTMLVEVLKDTGNFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  + VGPK+  EL +KGI+ +I++AIAM++Y+  R++W FAL +I  L+ D+  T   
Sbjct: 119 LRKLDTVGPKVGNELKQKGILSLILAAIAMMLYVSFRYEWRFALASILALLHDVIITAAS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  VAA+LTL+GYS+ND ++V+DR+R+ M L   S   +++I+++I+ TL 
Sbjct: 179 VIVFHIDLNLEVVAALLTLLGYSINDTIIVFDRIRERM-LVDKSNDIQEVINEAISHTLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  +L + ++GG  I  F++PM  G+V    SS+F+A  + + + 
Sbjct: 238 RTLLTSLTVFFVLLTLYLFGGENIIGFSLPMLVGVVFGTYSSMFLAPKLTILLG 291


>gi|297584749|ref|YP_003700529.1| protein-export membrane protein SecF [Bacillus selenitireducens
           MLS10]
 gi|297143206|gb|ADH99963.1| protein-export membrane protein SecF [Bacillus selenitireducens
           MLS10]
          Length = 320

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 135/304 (44%), Gaps = 9/304 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    + F++ R      S    +  I LL T GLN GIDF  G  + +LA+ PV 
Sbjct: 1   MNFEHWNTRLDFVKHRKKFFIASASTLLAGIILLMTVGLNLGIDFTSGTTIDILADEPVT 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              V +  E++                                +                
Sbjct: 61  EQEVMAEFENIGYIPDDLTLAGDTNEIGRAQFIGDLSQEETLSIQAHFM------DVYGN 114

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                 V P +  EL R  ++ V+I+++ ++IY+  RF+  + + AI  L  D    L  
Sbjct: 115 EPTVSTVTPIVGEELARNAVISVLIASVGIIIYVTFRFELLYGISAIVALFHDALLILVI 174

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINE 767
           F++  +E N+  +AAVLT++GYS+ND +V +DR+R+NM        F D   +++KS+ +
Sbjct: 175 FSILQMEVNIPFIAAVLTIVGYSINDTIVTFDRIRENMSYEKKLKGFEDVARVVNKSLVQ 234

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL RS+ T +    +   + ++GG  + +F++ +  G++    SS+FIAA + L +   +
Sbjct: 235 TLARSINTVLTVLFAAGALFIFGGEGLRTFSLALVVGLLAGTYSSLFIAAQVFLELKTRQ 294

Query: 828 AKNA 831
            K  
Sbjct: 295 IKKR 298


>gi|256391552|ref|YP_003113116.1| protein-export membrane protein SecF [Catenulispora acidiphila DSM
           44928]
 gi|256357778|gb|ACU71275.1| protein-export membrane protein SecF [Catenulispora acidiphila DSM
           44928]
          Length = 389

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/319 (24%), Positives = 143/319 (44%), Gaps = 12/319 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +      L    ++  F+  +     IS    + S   L   GLN+ +DF+GG Q  +
Sbjct: 2   SASNSWGNRLYRGEVSYDFIGKQKRWYTISGALLLISALSLLVFGLNFTLDFRGGSQFDI 61

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           ++      +       S  + D + Q  +  +   V ++  P  +    +V + +     
Sbjct: 62  VSP--TASTQTIQKSVSSIVKDPTVQTSNDSQGRHVVVKTTPLSTDQLQKVRQAIATDAG 119

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
           +           +V      E+ +K I G+++    +++Y+ + ++W  AL  I  L+ D
Sbjct: 120 KT-KDPNAVTVTLVSGSWGHEITQKAITGLVVFVALVMLYLAVFYEWKMALSGIIALVHD 178

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI---SFRDL 760
           +  T G +AL G E +   V   LT++GYS+ D VVV+D++R+N K   T+    S+   
Sbjct: 179 LVITAGIYALIGFEVSPATVIGFLTILGYSLYDTVVVFDKVRENTKGLGTTKTDLSYTQS 238

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGG------SVIGSFAIPMAFGIVVAASSSIF 814
            + ++N+TL RS+ TS+ A I V  +   G        V+   A+ +  GI V   SSIF
Sbjct: 239 ANLAVNQTLIRSLNTSLIALIPVAALLFAGTVVSGGAGVLQDLALALLVGIAVGTYSSIF 298

Query: 815 IAAPILLFIYDWRAKNARI 833
           IA P+L  + +   +   +
Sbjct: 299 IATPLLADLKEREPEMRAL 317


>gi|302135102|ref|ZP_07261092.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           tomato NCPPB 1108]
          Length = 622

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 166/539 (30%), Positives = 275/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE     S+ Q+ N I L F D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKARYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVN 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + +F++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                R +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTRQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + I+I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 42.4 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 29/118 (24%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +   G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVGGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALTDA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|194332866|ref|YP_002014726.1| preprotein translocase subunit SecF [Prosthecochloris aestuarii DSM
           271]
 gi|194310684|gb|ACF45079.1| protein-export membrane protein SecF [Prosthecochloris aestuarii
           DSM 271]
          Length = 309

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 153/309 (49%), Gaps = 11/309 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             +     I F+R R    GIS++  +  +  L   GLN+GIDFKGG +  +  ++ + +
Sbjct: 1   MHLFKNTNIDFLRHRKIAYGISLVLILAGMVSLAIRGLNFGIDFKGGTEAVLRFDQDISI 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             VRS L    +  +         +  V +Q      V Q + +               +
Sbjct: 61  GDVRSVLREAGVRGMVKSY---GTDRSVLIQTDFEGDVNQLKTIVSTALNDRFSDNPHEM 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP I+ +L    +  ++ + +A+LIY+ IRF++ FA  ++  +  D+   LG F
Sbjct: 118 LRIDAVGPSIASDLKWAALKALLGALVAILIYVGIRFEFRFAAASVVAIFHDVFIVLGLF 177

Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           +L G       ++ + + +AA LT+ GYS+ND VVVYDR+R+N+ L      +  + + S
Sbjct: 178 SLLGGVFDFMPLDVDQSIIAAFLTIAGYSINDTVVVYDRIRENV-LGRKPSEYSSIFNAS 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +N+TL R++ TS    ++V  + ++ G  I  F+  +  GI V   SSIFIAAPI+L   
Sbjct: 237 LNQTLSRTIITSGTTLLTVAVLFIFAGPAIRGFSFAILIGIAVGTYSSIFIAAPIVLDWQ 296

Query: 825 DWRAKNARI 833
               +  ++
Sbjct: 297 LKSKRPIKL 305


>gi|119713613|gb|ABL97664.1| protein-export membrane protein SecD [uncultured marine bacterium
           EB0_39H12]
          Length = 615

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 156/521 (29%), Positives = 262/521 (50%), Gaps = 38/521 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     N + LGLDLRGG H +++VD +  +         +LR   ++E I
Sbjct: 103 NLAPTTPKWLMDIGANPMKLGLDLRGGVHFLMQVDTETAIKNRQDGTLQDLRRRFREEKI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
                  +    I L F +    +   + ++      N  L  D             + +
Sbjct: 163 RYSQAGVESDASIYLKFNNPDVLQKAEEFISDNYSQFNFPLISDA----------MSLRL 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VLS   I+Q+ S AI+Q++  +R R++++G+SE  +QR G  RI++QLPG QD +  + +
Sbjct: 213 VLSDLEIEQIESDAIDQNLTTLRNRVNELGVSEPIVQRQGKKRIVVQLPGIQDTAEAKNI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           LG TA + FH     +            R+  G    ++D + + G  +  A A+FD   
Sbjct: 273 LGKTATLEFHLEAQMD-TPRSRKTSYPYRNGMGAPAFLQDAIILGGDQVATAQASFDENG 331

Query: 266 HKPVVDISFDEMGARR-----------------------FFEVTRDNIGKPLAVVLDGRV 302
              V      E G++                         +E   +    P+    + + 
Sbjct: 332 LPQVNITLDGEGGSKMHRATRGNIGKRLGVLFVEQKTRTVYERDVEGKQIPVQESYEVKE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +    +A      +I+G  +   +  LA +LRAG+L   +  VEER VG  LG+D+I 
Sbjct: 392 IISLATIRAALGTTFRITGLDSPSESSELALLLRAGALAAPMTFVEERTVGPSLGADNIQ 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G  +++ GL+L+++F++  Y  +G+ A  ++  N++L +A++S+L ATLTLP IAGIVL
Sbjct: 452 AGIFSMILGLLLVLVFILFYYRVFGIAASLALTFNIVLLVAVMSILSATLTLPGIAGIVL 511

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+  RIREE  K +    ++D G++RA+ TI+D+N+T LI  V+L  +G 
Sbjct: 512 TVGMAVDANVLIFSRIREELNKGREPLEAIDAGYNRAFLTIWDANVTTLIVAVILLSYGT 571

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           G V+GFAIT+ + I+ SMFTAI   RA +  I   +K    
Sbjct: 572 GPVKGFAITLSIGIITSMFTAIMGTRAFVNLIYGSRKNLER 612



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 82/206 (39%), Gaps = 4/206 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                     +  +   +    T      VGP +  + I+ GI  +I+  + +L++I   
Sbjct: 412 DSPSESSELALLLRAGALAAPMTFVEERTVGPSLGADNIQAGIFSMILGLLLVLVFILFY 471

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F + A   L  +I   +   ++      L  +A ++  +G +V+  V+++ R+R+ 
Sbjct: 472 YRV-FGIAASLALTFNIVLLVAVMSILSATLTLPGIAGIVLTVGMAVDANVLIFSRIREE 530

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +          + ID   N         ++   I  + +  +G   +  FAI ++ GI+ 
Sbjct: 531 L---NKGREPLEAIDAGYNRAFLTIWDANVTTLIVAVILLSYGTGPVKGFAITLSIGIIT 587

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +  ++I      +  IY  R    RI
Sbjct: 588 SMFTAIMGTRAFVNLIYGSRKNLERI 613


>gi|256822294|ref|YP_003146257.1| protein-export membrane protein SecD [Kangiella koreensis DSM
           16069]
 gi|256795833|gb|ACV26489.1| protein-export membrane protein SecD [Kangiella koreensis DSM
           16069]
          Length = 639

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 170/526 (32%), Positives = 275/526 (52%), Gaps = 38/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG- 85
           ++    P  +       + LGLDLRGG H +++VD +  +    +    +    L  E  
Sbjct: 121 NLAPATPDWLSSLGGKPMKLGLDLRGGIHFLMQVDMEQAMARQQEQLRRDFIESLTAEKP 180

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKV-TLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                +  I N + +SF +    E     +   ++  ++  L     + ++         
Sbjct: 181 SIRGRVETIDNGLVISFRNQDDAERAFSVLYQNYIDRIDINLAEQNNRPVV--------R 232

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
              +Q  +  +  +AI+Q+  I+  R++ +G++E  IQR GS RI++QLPG QD +  ++
Sbjct: 233 ATFNQTKLQAIQDNAIDQNRLILSNRVNSLGVAEPLIQRQGSDRIVVQLPGVQDSALAKR 292

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFL----RDSDGNQYLVEDKVEISGIHLNGATAN 260
           +LG TA + F  V           G         +S+    +V D+V++SG HL  A ++
Sbjct: 293 ILGATATLEFRLVNHEADIVAAQQGRVPAGSKLFESERGPIVVFDEVQVSGDHLTDAFSS 352

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
           F P+T++P+V +  D  G  R    T  N G  LA++L   V                  
Sbjct: 353 FHPQTNQPIVSVRLDGEGGARMLRTTTANRGNSLAMILKESVPVFEIKDGKRELVKSSVV 412

Query: 303 ---LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              ++AP IN A  +       +FT      LA  LR+G+L     IVEER +GA LG++
Sbjct: 413 ETLVSAPRINGAFGTDFFIEGPDFTPANTKDLATQLRSGALIAPTFIVEERTIGASLGAE 472

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  +++ G  L+VLFM++ Y  +G+VA+ ++  NV+  +A++S++GATLTLP IAG
Sbjct: 473 NIEKGINSVIIGFSLVVLFMLLYYKAFGVVANIALIFNVVTIVAVMSIMGATLTLPGIAG 532

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+++ ERIREE R    V  ++D G+S+A STI D+NIT  IA ++L+ 
Sbjct: 533 IVLTVGMAVDANVIIFERIREELRHGTGVAQAIDKGYSQALSTIADANITTAIAAIILYA 592

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G ++GFAIT+ + IL SMFTAI + R ++  I    K  S   
Sbjct: 593 VGTGPIKGFAITLFIGILTSMFTAILVSRGIINLIYGRGKKPSKLW 638



 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 39/178 (21%), Positives = 86/178 (48%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  E I KGI  VII    +++++ + +K  F + A   LI ++   +   ++ G
Sbjct: 464 TIGASLGAENIEKGINSVIIGFSLVVLFMLLYYK-AFGVVANIALIFNVVTIVAVMSIMG 522

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ ++           IDK  ++ L      
Sbjct: 523 ATLTLPGIAGIVLTVGMAVDANVIIFERIREELR---HGTGVAQAIDKGYSQALSTIADA 579

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I+ + +   G   I  FAI +  GI+ +  ++I ++  I+  IY    K +++
Sbjct: 580 NITTAIAAIILYAVGTGPIKGFAITLFIGILTSMFTAILVSRGIINLIYGRGKKPSKL 637



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/120 (14%), Positives = 38/120 (31%), Gaps = 27/120 (22%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              W  +L   +  I LL A PN   +    +  SA+    IS                 
Sbjct: 16  YPKWKYVLILFVVAISLLYAAPNIYGEDPAVQL-SALRDATIS----------------- 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL-SFADSRFKENIADKVTLFLQG 121
                   +   +++ +  ++EG+   ++ +   K+ +  F  +  +    +     L  
Sbjct: 58  --------EQQVEQIEAAWQQEGLASKAIERDGEKLVIARFQSNEEQLQAQEIANKILNP 109


>gi|261401411|ref|ZP_05987536.1| protein-export membrane protein SecF [Neisseria lactamica ATCC
           23970]
 gi|269208539|gb|EEZ74994.1| protein-export membrane protein SecF [Neisseria lactamica ATCC
           23970]
          Length = 311

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/303 (31%), Positives = 165/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS+L  I ++  L T GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMGYGKLTTFISLLTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYRQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L++GDI  Q     K+ ++RL  + G + AQ  +   V   + +  P   
Sbjct: 61  VNKMRDRLDTLKMGDIQVQALGTNKHIMIRLPNKEGVTSAQ--LSNRVMDLLKKDNPDVA 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +      +++Y+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIVYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +  +    +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSREN 298

Query: 830 NAR 832
             R
Sbjct: 299 IGR 301


>gi|19110414|gb|AAL82790.1| export membrane protein SecD [Rickettsia typhi]
          Length = 518

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 198/533 (37%), Positives = 319/533 (59%), Gaps = 28/533 (5%)

Query: 1   MRN-NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N   W ++   +      + ALPNF+  +        +P + ++LGLDLRGG++L+L+
Sbjct: 1   MQNLPKWKIVPSIICTVFATICALPNFIQIN-----WKFLPHDSVNLGLDLRGGANLLLD 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           VD D ++N  ++  +D LR   ++  IG  ++    N I L    +   +++   +    
Sbjct: 56  VDFDTYLNDSMENIADTLRKNFREHKIGYKNLLVRHNNIQLEVRSTEVLKSLKKIIHK-- 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         +++   + +I +  S++ ++ +++  +EQS+EI+R RID  G  E 
Sbjct: 114 ----------IDPEIIIEVNKNKIKLRYSESRLNDLLNKVVEQSIEIVRMRIDSTGTKEP 163

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            +QR G+  IL+Q+PG  +PS L+ +LG TAK++FH V  N + +  + G   L      
Sbjct: 164 ILQRQGNKHILLQVPGVDNPSYLKNILGKTAKLTFHLVDENANIEEAIKGHIPLDSMLIK 223

Query: 240 ---------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                      +++ KV +SG HL  A+A+FD  + +P+V  SF+ +G++ F E+T++N 
Sbjct: 224 GDSEHHGEYYIVIKKKVLLSGTHLTKASASFDQNS-QPMVAFSFNNLGSKIFTEITKNNT 282

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           GK LA+VLD ++L+AP+IN AI  G   I+GNFTIE+A  LA +LR GSLP  L I+EER
Sbjct: 283 GKRLAIVLDNKLLSAPMINGAIIGGDGIITGNFTIESANELALLLRVGSLPTPLKIIEER 342

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
           ++G +LG+DSI  G  A + G   + +FMI+ YG  GL A+ ++ L ++  LALLSL  A
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFTAVCIFMILSYGVIGLFANIALILALLYILALLSLFQA 402

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAGI+L +G+AVD+N+L+ ERI+EE  K  S   ++  GF  A++TI DSN+T 
Sbjct: 403 TLTLPGIAGIILTMGMAVDANVLIYERIKEELHKGVSNLYAIRTGFESAFATIIDSNLTT 462

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           LI    L+ FG GA++GFA+ + + I+ SMF+AI I + ++   ++Y K K +
Sbjct: 463 LIVAFALYIFGVGAIKGFAVALTIGIISSMFSAIIITKLLIDIWVKYFKPKKL 515



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 79/178 (44%), Gaps = 5/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I  G    +I   A+ I++ + +     L A   LIL +   L   +LF 
Sbjct: 343 SIGPNLGADSIESGKKAGLIGFTAVCIFMILSYGVI-GLFANIALILALLYILALLSLFQ 401

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+++ +      +S    I           + +
Sbjct: 402 ATLTLPGIAGIILTMGMAVDANVLIYERIKEELH---KGVSNLYAIRTGFESAFATIIDS 458

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   I    + ++G   I  FA+ +  GI+ +  S+I I   +L+ I+    K  ++
Sbjct: 459 NLTTLIVAFALYIFGVGAIKGFAVALTIGIISSMFSAI-IITKLLIDIWVKYFKPKKL 515


>gi|170726112|ref|YP_001760138.1| preprotein translocase subunit SecF [Shewanella woodyi ATCC 51908]
 gi|169811459|gb|ACA86043.1| protein-export membrane protein SecF [Shewanella woodyi ATCC 51908]
          Length = 315

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 171/299 (57%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            + ++     I F+R       +S+L  + S+  L T G+N+G+DF GG  + +  + P+
Sbjct: 1   MYQILSIKGTINFLRHALPISMLSLLLVLGSLTSLATKGINWGLDFTGGTVVELEFSSPI 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL ++R  L S++      QNF   ++ L RL  + G   A    +  V +  T + P  
Sbjct: 61  DLEILRGKLTSVETDGAVVQNFGSSRDVLTRLPVKEGV--ATDTQVAQVMEAATALDPQV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +  E+VGP+I +EL  +G + V+++ I +LIY+  RF+W  ALG++  L  D+  TLG
Sbjct: 119 IQKRVEVVGPQIGKELAEQGGLAVLVALICILIYVSFRFEWRLALGSVAALAHDVIITLG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  ++F+LT +A VLT++GYS+ND +VV+DR+R+N      S S  ++++ SI +T+
Sbjct: 179 VFSLLQLDFDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKS-SPEEVVNTSITQTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T+    + V+ + + GG++I  FA  +  GI V   SSI++A+ + + +   R 
Sbjct: 238 SRTIITTGTTLVVVVALFLKGGTMIHGFATALLMGIFVGTFSSIYVASFLAIKLGINRE 296


>gi|167580649|ref|ZP_02373523.1| preprotein translocase subunit SecD [Burkholderia thailandensis
           TXDOH]
          Length = 621

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 164/514 (31%), Positives = 266/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  IVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLVSSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A+ Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALRQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQVPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGVVSVLGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|206561644|ref|YP_002232409.1| preprotein translocase subunit SecD [Burkholderia cenocepacia
           J2315]
 gi|198037686|emb|CAR53629.1| putative protein-export membrane protein SecD [Burkholderia
           cenocepacia J2315]
          Length = 673

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 162/516 (31%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + RS L+ + I    + +++  + ++F+D++  E+    +   +  +           
Sbjct: 160 ASDARSLLRDKNIRDGGVSRVEQSVVVNFSDAQTAEDARKVLAASITELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ GS RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G            L++  V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGIQAPVLLKKDVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRTVSRDNIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVVSVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  I+   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608



 Score = 41.2 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 33/124 (26%), Gaps = 29/124 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IGLL  LPNF  ++                           ++V 
Sbjct: 3   RYPLWKYVVMVVALAIGLLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIADKVTL 117
                         ++ S L    I    +          I +   D+  +  + D +  
Sbjct: 38  SGKATVKLDSTTLTQVESALASAQIKPDDVTFENTATNANIRVRLKDTDTQLRVKDLLQK 97

Query: 118 FLQG 121
            L  
Sbjct: 98  SLNA 101


>gi|78222075|ref|YP_383822.1| preprotein translocase subunit SecF [Geobacter metallireducens
           GS-15]
 gi|78193330|gb|ABB31097.1| protein translocase subunit secF [Geobacter metallireducens GS-15]
          Length = 302

 Score =  206 bits (523), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/300 (29%), Positives = 143/300 (47%), Gaps = 5/300 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSIC---LLFTHGLNYGIDFKGGIQLGVLANRP 588
                   I FM  + +   ISI+ +I  I     +     N GIDF GG  + +   +P
Sbjct: 1   MEFIGKTHIDFMGMKKFSFAISIVIAILGIIGIVRIALGTANMGIDFSGGTAVQLKFAQP 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +   R  L    I D + Q        LV++            +++   +K       
Sbjct: 61  VHIDRAREALAKHGIHDANLQELKTGNKLLVKVGKTSLPQGNAADLIQTAFQKEL-TGNT 119

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             ++++  +GP I  +L +  +V V IS I +LIYI  RF + F +GA+   + D+    
Sbjct: 120 FVVESSTEIGPAIGDKLRKDTLVAVAISMIGILIYIAWRFDFTFGVGALVATLHDVLAMF 179

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F L   E NL  + AVLT+ GYS+ D VVV+DR+R+N+   T   S   + + SINE 
Sbjct: 180 AVFFLLDKEVNLLFITAVLTIAGYSLTDTVVVFDRIRENLHKNTK-DSLETIFNFSINEV 238

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ T++  F++   +  +GG VI  FA+ +  GI+V   SS+F+A+PI+        
Sbjct: 239 LSRTIITALTTFLAAGSLYFFGGEVIHDFALALVVGILVGVYSSVFVASPIVEVWGRRPK 298


>gi|152980440|ref|YP_001352043.1| preprotein translocase SecD subunit [Janthinobacterium sp.
           Marseille]
 gi|151280517|gb|ABR88927.1| preprotein translocase SecD subunit [Janthinobacterium sp.
           Marseille]
          Length = 619

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 166/511 (32%), Positives = 276/511 (54%), Gaps = 19/511 (3%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            +   N LP +    +  ++    + LGLDLRGG H +++VD    +N  +       RS
Sbjct: 108 YLVAFNLLPNTP--GWLQSLNAAPMYLGLDLRGGVHFLMQVDTKAVMNKRVLGLQASARS 165

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+ + I    + +  + + + F D+  +      +T  L+        +       +  
Sbjct: 166 ILRDKNIRHAGISRSGDSVEILFRDADTRNKARTVLTNELR--------ELVLTDAGSGE 217

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           + ++   L+   + Q +  A++Q++  + +R++++G++E  IQR G+ RI++Q+PG QD 
Sbjct: 218 DLKLVGALNPTALKQTVEDAVQQNITTLSKRVNELGVTEPLIQRQGADRIVVQMPGVQDV 277

Query: 200 SRLRQLLGTTAKMSFHKVLPN-----NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           SR + ++G TA +    V               FG    +       ++     I+G ++
Sbjct: 278 SRAKDIIGKTATLEVRLVDETVTRGTEETAAIPFGSELFKVGKNAPVVLYKDPIITGEYI 337

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV---LTAPVINQA 311
           + A+A+FD   H+P V I  +  G RR  E TR  +GK +A+VL  +    +      + 
Sbjct: 338 SSASASFDQN-HQPSVSIDLNGDGGRRMREATRTRVGKAMAIVLFEKNKGEVLTVATIRD 396

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
               + QI+G  + E A  LA +LRAGSL   + I+EER +G  LG+++I KG  A + G
Sbjct: 397 ELGARFQITGMGSAEAASDLALLLRAGSLAAPMEIIEERTIGPQLGAENITKGFDATLYG 456

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
            + I +FMI+ Y  +G  + F++ +N++L +ALLSLL ATLTLP IA I L +G+A+D+N
Sbjct: 457 FIAIGIFMIIYYRAFGFFSVFALAVNLMLLIALLSLLQATLTLPGIAAIALTLGMAIDAN 516

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+NERIREE R   S   ++ MGF RA++TI DSN+T +IA + L  FG GAVRGFA+ 
Sbjct: 517 VLINERIREELRAGHSPQTAISMGFERAWATILDSNVTTMIAGLALLIFGSGAVRGFAVV 576

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             L IL S+F+A+ + R ++      KK  +
Sbjct: 577 HCLGILTSIFSAVFVSRGVVNLWYGRKKKLT 607



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 88/201 (43%), Gaps = 4/201 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A+      +  +   +     I     +GP++  E I KG    +   IA+ I++ I +
Sbjct: 409 SAEAASDLALLLRAGSLAAPMEIIEERTIGPQLGAENITKGFDATLYGFIAIGIFMIIYY 468

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +  F   ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+R+ +
Sbjct: 469 R-AFGFFSVFALAVNLMLLIALLSLLQATLTLPGIAAIALTLGMAIDANVLINERIREEL 527

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      S +  I           + +++   I+ L + ++G   +  FA+    GI+ +
Sbjct: 528 RA---GHSPQTAISMGFERAWATILDSNVTTMIAGLALLIFGSGAVRGFAVVHCLGILTS 584

Query: 809 ASSSIFIAAPILLFIYDWRAK 829
             S++F++  ++   Y  + K
Sbjct: 585 IFSAVFVSRGVVNLWYGRKKK 605



 Score = 42.8 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 29/124 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I+ ++   +G+L  LPNF  +S                           +++ 
Sbjct: 3   RYPLWKYIIIAVALLLGVLYTLPNFFGESPA-------------------------VQIS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI----QNKITLSFADSRFKENIADKVTL 117
                         ++   LKK+GI    +       Q  + + F ++  +      +  
Sbjct: 38  SAKATVKVDSSLMSQVEQALKKDGIQYDGIVYETIGTQGTVRVRFPNTDIQFKAKGILEK 97

Query: 118 FLQG 121
            L  
Sbjct: 98  DLNT 101


>gi|87200088|ref|YP_497345.1| protein translocase subunit secF [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135769|gb|ABD26511.1| protein translocase subunit secF [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 325

 Score =  206 bits (523), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 171/302 (56%), Gaps = 6/302 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD   I F++ R     ISI+    S  L+ T GLN G+DF GG  + V   R
Sbjct: 1   MKLLKLVPDHTNIHFLKWRVPFYVISIILMAASWGLVLTKGLNLGVDFIGGQMIRVTFER 60

Query: 588 PVD--LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG---DSVAQTRVLEMVKKKI 642
             +  +  +R  +  L  G+   Q +       +R++   G   D+    ++   +   I
Sbjct: 61  SAEAPVGELREQVGRLGYGEPIIQRYGKPNEISIRMKLPEGADHDAALADKMARTITADI 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            +    + I   + V  K+S+EL       + ++++A+  YIW+RF+W F +GA+  L+ 
Sbjct: 121 KKNHGDARIDGVDSVSGKVSKELGWDAFKALGLASLAVAAYIWLRFEWQFGVGALFALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+T TLG FAL G+EF+L  VAA+LTLIGYS+ND +VVYDR+R+NMK +   +   +L+D
Sbjct: 181 DVTLTLGLFALTGMEFDLNIVAALLTLIGYSLNDTIVVYDRIRENMKKFRK-MPMPELLD 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            S+NETL R++ TS++  I+++ + + G  VI  F   +  GI V   SSI++AAPIL++
Sbjct: 240 LSVNETLARTIVTSLSMLITLVALLLLGPDVIFGFTAAITLGIFVGTYSSIYMAAPILIW 299

Query: 823 IY 824
           + 
Sbjct: 300 LK 301


>gi|206889268|ref|YP_002248127.1| protein-export membrane protein SecF [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741206|gb|ACI20263.1| protein-export membrane protein SecF [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 301

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/292 (30%), Positives = 157/292 (53%), Gaps = 8/292 (2%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSVV 594
             I F+  ++  + +S +  I  I  +F       N G+DF GG+ L +  ++PV L+ V
Sbjct: 8   TNIDFLGKKYIALALSCIMIILGIFAIFQIHAGKANLGVDFAGGLSLQIRFSQPVTLAEV 67

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L+   I D   Q         + ++ +      Q  + + +K+ +T   P   I++ 
Sbjct: 68  RTVLDKAGIKDADIQEL--PTEKKILIKLKKQQEGIQDTIEKALKENLTAKEP--IIESV 123

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +GPKI     R  +  ++ +   +LIYI IRFK++F++GA      D+   LG F + 
Sbjct: 124 TEIGPKIGERTKRDALFAILAATAGILIYIAIRFKFHFSIGATVATFHDVMAVLGIFYIL 183

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRSV 773
             E NL  ++A+LT+ GYS+ D VVV+DR+R+N+       ++   L++KSINE L R++
Sbjct: 184 DKEINLIFISALLTIAGYSLTDTVVVFDRIRENLGKVAKGTMTLEALMNKSINEVLSRTI 243

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            TS+   ++ + +  +GG V+  FA+ M  GI+V   SSIF+A+P++L +  
Sbjct: 244 VTSLTTLMAAVALFFFGGEVLHDFALAMILGILVGTYSSIFVASPVVLLLGK 295


>gi|313668905|ref|YP_004049189.1| protein-export membrane protein [Neisseria lactamica ST-640]
 gi|313006367|emb|CBN87830.1| putative protein-export membrane protein [Neisseria lactamica
           020-06]
          Length = 311

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 95/303 (31%), Positives = 164/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS+L  I ++  L   GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMGYGKLTTFISLLTFIAAVFFLVAKGLNFSVEFTGGTVMEVQYRQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L++GDI  Q     K+ ++RL  + G + AQ  +   V   + +  P   
Sbjct: 61  VNKMRDRLDTLKMGDIQVQALGTNKHIMIRLPNKEGVTSAQ--LSNRVMDLLKKDNPDVA 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +      ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +  +    +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSREN 298

Query: 830 NAR 832
             R
Sbjct: 299 IGR 301


>gi|331009938|gb|EGH89994.1| multidrug/solvent transporter [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 1044

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 183/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    +         F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALISTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVWMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  V+
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAVV 666



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 91/242 (37%), Gaps = 10/242 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAI----PMAFGIVVAASSSIFIAAP 818
            +  G  V  ++     +LPMA +GGS       F+I     MA  +VVA  S+  + A 
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALISTPALCAT 495

Query: 819 IL 820
           +L
Sbjct: 496 ML 497



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   +   V  S   S   +     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSSGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEVLGTPAPGYSSGE 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLVDSAIEACRMRLRPIIMTSMAFILGVVPLAISTGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +        +
Sbjct: 1009 ITAVILAIFWVPLFFVSVSGLFKSKKK 1035


>gi|326794835|ref|YP_004312655.1| protein-export membrane protein SecF [Marinomonas mediterranea
           MMB-1]
 gi|326545599|gb|ADZ90819.1| protein-export membrane protein SecF [Marinomonas mediterranea
           MMB-1]
          Length = 304

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 96/287 (33%), Positives = 164/287 (57%), Gaps = 5/287 (1%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I FM  R      S+L  + SI  L T GL +G+DF GG  + V  +   +L  V
Sbjct: 1   MKVTNIPFMAMRKIVAMFSVLLILISIGSLATKGLQFGLDFTGGTLVEVKYDEAPNLDDV 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L      D+  QNF    + +VR+      ++      E++           ++Q +
Sbjct: 61  RAVLAQNNYSDVVVQNFGSPTDVVVRMANSYTATLGD----EVLVALKENGKVGVSLQRS 116

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E VG ++  EL  +G +G++++   +++Y+ +RF++ F++ ++  L  D+  TLG F+LF
Sbjct: 117 EFVGAQVGEELREQGGLGMLLALAIVMLYVAVRFQFKFSIASVAALAHDVVITLGVFSLF 176

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            IEF+LT +AA+L +IGYS+ND +VV DR+R+N ++   +    +LI++SIN+TLGR++ 
Sbjct: 177 EIEFDLTVLAALLAVIGYSLNDTIVVCDRIRENFRIMRETEP-EELINESINQTLGRTII 235

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           TSM     ++ + ++GG  I +F+  +  GIV+   SSIF+AA +LL
Sbjct: 236 TSMTTLFVLVVLFLFGGEAINNFSFALLVGIVIGTYSSIFVAANLLL 282


>gi|126461219|ref|YP_001042333.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides ATCC
           17029]
 gi|126102883|gb|ABN75561.1| protein translocase subunit secF [Rhodobacter sphaeroides ATCC
           17029]
          Length = 324

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 177/312 (56%), Gaps = 7/312 (2%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              R  L P+   I F  A     G S+     S+    T GLN+GIDF+GG  +   + 
Sbjct: 1   MAFRLKLCPEKTNIDFFWAAPVTFGFSVFLMAASLVAWLTLGLNFGIDFRGGTTIRTEST 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKK 640
           + VD++  R+ LE   +GDIS                +VR+  Q          +  V++
Sbjct: 61  QAVDVAAYRAALEGQDLGDISITEVFDPGFRADQHVAMVRIGAQDATQSITPEQIGQVEE 120

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +  + P  T  + E VGPK+S ELIR  I+ V  +   + +YIW+RF+W FALG++  L
Sbjct: 121 ALKTVDPSITFPSVESVGPKVSGELIRSAILAVAAACAGIAVYIWLRFEWQFALGSVAAL 180

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           I D+  T+G FALF I+F+LT VAA+LT++GYS+ND VVV+DR+R+N+  Y  ++  RD+
Sbjct: 181 IHDVLVTIGVFALFQIKFDLTTVAALLTVLGYSINDTVVVFDRLRENLVKY-KTMPLRDV 239

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ S+NETL R++ T M   I+++ + V+GG VI  F   + FG+V+   SS+++A  I+
Sbjct: 240 MNLSVNETLSRTIMTLMTTLIALVSLLVFGGDVIRGFVFAITFGVVIGTYSSVYMAKNIV 299

Query: 821 LFIYDWRAKNAR 832
           L++   R    +
Sbjct: 300 LYLGVDRGGPKK 311


>gi|254253198|ref|ZP_04946516.1| Preprotein translocase subunit SecD [Burkholderia dolosa AUO158]
 gi|124895807|gb|EAY69687.1| Preprotein translocase subunit SecD [Burkholderia dolosa AUO158]
          Length = 673

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 158/516 (30%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ + I    + ++   + ++F+D++  E+    +   +  +           
Sbjct: 160 ASDARTLLRDKNIRDGGVSRVDKSVVINFSDAQTAEDARKALAASITELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++  V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQVPVLLKKDVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FMI  Y  +G+++   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMIAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 IAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQAGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  I+   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/120 (16%), Positives = 36/120 (30%), Gaps = 21/120 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +   IG L  LPNF  ++   +    +   + ++ LD            
Sbjct: 3   RYPLWKYVVMVVALAIGFLYTLPNFFGEAPAVQ----VSSGKATVKLD------------ 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                +  L      L S   K     F        I +   D+  +  + D +   L  
Sbjct: 47  -----STTLTQVESALASAHIKPDDITFENTATNANIRVRLKDTDTQLRVKDLLQKSLNA 101


>gi|330872898|gb|EGH07047.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 622

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 166/539 (30%), Positives = 275/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE     S+ Q+ N I L F D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKARYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + +F++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + I+I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.5 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALTDA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|126725448|ref|ZP_01741290.1| protein-export membrane protein SecF [Rhodobacterales bacterium
           HTCC2150]
 gi|126704652|gb|EBA03743.1| protein-export membrane protein SecF [Rhodobacterales bacterium
           HTCC2150]
          Length = 321

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/304 (36%), Positives = 177/304 (58%), Gaps = 6/304 (1%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P+     F R      G SI+  + SI + F  GLN+GIDF+GG  +  ++   
Sbjct: 1   MRLRLVPENTKWDFFRVAPITFGASIVVFLASIAIYFVVGLNFGIDFRGGTSIRTVSENS 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGE-----KNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           VD++  R  LE L +GD+S                VR++ Q G+  A  +++E  +  + 
Sbjct: 61  VDVAAYRRALEELNLGDVSISQVFDPARPDINVAQVRIEDQGGEEAASAKMIENAEIALK 120

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            I       + E VGPK+S ELI   ++ V+ +  A+ +Y+W+RF+W FA+GAI +L+ D
Sbjct: 121 AIDETIVFSSVESVGPKVSGELIVSAMISVLSALAAVCVYVWLRFEWQFAVGAIASLVHD 180

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T+G F+L  I+F+LT +AA+LT++GYS+ND VVV+DR+R+N++ +   +   DL++ 
Sbjct: 181 VVITIGLFSLLQIQFDLTIIAALLTIVGYSLNDTVVVFDRVRENLRKF-KKLVLSDLLNV 239

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           S+NETL R+  TS    +++  +   GG VI  F   M +GIV+   SS+F+AA IL F+
Sbjct: 240 SVNETLSRTTMTSFTTLLALFALFYLGGDVIHGFVFAMIWGIVIGTYSSVFVAATILNFL 299

Query: 824 YDWR 827
              R
Sbjct: 300 GVKR 303


>gi|94497997|ref|ZP_01304561.1| acriflavin resistance protein B [Sphingomonas sp. SKA58]
 gi|94422580|gb|EAT07617.1| acriflavin resistance protein B [Sphingomonas sp. SKA58]
          Length = 1058

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 86/681 (12%), Positives = 180/681 (26%), Gaps = 43/681 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GLL           + +FP   P               + ++   
Sbjct: 8   RPIFAWVIAIVVMLAGLLAI-----RSLPVAQFPEIAPPA-------------VTIQTSY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+  +   +   LK    +  FS     +    ITL+F      +    +V  
Sbjct: 50  PGANAQTLESTTTQIIEQQLKGIDNLRYFSSTSDGSGNLSITLTFEQGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  L         ++++    D  I    + +  I     D +   
Sbjct: 110 KLSQATPLLPQEVQQQGLRVGKSTSSFLLIAAVYTDDGIHDQEDAADFIAATLQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP ++  L  TT  +       N        G     +  
Sbjct: 170 TGVGDTQLFGSQ-YAMRIWLDPYKMANLRITTGDVKSAIQAQNAQVSAGQIGGAPAPEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +                      +       
Sbjct: 229 ALNATVTAQSRL-------------RTAEEFEKIRLRSNSDGSVVLLSDVARVELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G        +          +   T+E        L               N      
Sbjct: 276 GFGVKFNGHPASGFGIKLAPGANALDTVEAVKDRVNELSKNFPTWVKYDFPVDNSKFVTL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++  LA+L   G T+   ++
Sbjct: 336 SVEQVIHTLFEAILLVFVVMFIFLQNWRATLIPTIAVPVVLLGALAVLYAAGFTINTLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  +   +           +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERLIQDEGLTPKEAARRSMDEISGALIGIGLVLSAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  S+++S+  A+ +  A+   I+  K           RF  
Sbjct: 456 MAFFGGSTGVIFRQFSITIVSSMILSVLVALILTPALCAAIL--KPASHGHDQWSGRFGS 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           I       F R    GV                  L Y +   G   + +          
Sbjct: 514 IFGRFFGWFNRTFDKGVARYGQGVEKVERRWVRTMLLYLLIVIGMAFIFLRLPSGFLPEE 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            +  + +           + E++     ++   D  +    +  +          +    
Sbjct: 574 DQGIIIAQLSLPAGSTLEETERSLTRMRRHYLVDEKSNVEAVFTIAGFGFVGQGQNVGIA 633

Query: 654 TEIVGPKISRELIRKGIVGVI 674
              +     R+     +  + 
Sbjct: 634 FARMKDWADRKGAENAVPAIA 654



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 86/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +      +      +          +++     ++    ++++  P 
Sbjct: 260 VLLSDVARVELGAENYGFGVKFNGHPASGFGIKLAPGANALDTVEAVKDRVNELSKNFPT 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +  +   K     + + I  +  + + + + ++I  + W   L     + + +   
Sbjct: 320 WVKYDFPVDNSKFVTLSVEQVIHTLFEAILLVFVVMFIFLQNWRATLIPTIAVPVVLLGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L      G   N   +  ++  IG  V+D +VV + +     +    ++ ++   +S++E
Sbjct: 380 LAVLYAAGFTINTLTLFGMVLAIGLLVDDAIVVVENV--ERLIQDEGLTPKEAARRSMDE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +   +      LPMA +GGS       F+I +   ++++   ++ +   +
Sbjct: 438 ISGALIGIGLVLSAVFLPMAFFGGSTGVIFRQFSITIVSSMILSVLVALILTPAL 492



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 69/208 (33%), Gaps = 9/208 (4%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + F+G  +  ++    PG S                     +             +    
Sbjct: 822  ERFNGVPSMNIQGGAAPGVSSGTAMQAMEEHAAKLPAGIGFSWNGISYEEQTSGGQAPYV 881

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + ++I  + +     +   W   +  +  + L +   +    L G+  ++     ++T
Sbjct: 882  YALSMLIVFLCLA---ALYESWSVPIAVMLVVPLGVLGAVIAATLAGLNNDIYLQVGLIT 938

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             IG S  + +++ +   + M+     +S      ++    L   + TS A    VLP+A+
Sbjct: 939  TIGVSAKNAILIVEFAEEKMRE---GLSPARAALEAGKLRLRPILMTSFAFIFGVLPLAL 995

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSI 813
                G     +    +  G++ A   +I
Sbjct: 996  STGAGAGGQNAIGWAVVGGMLSATVLAI 1023


>gi|325577686|ref|ZP_08147961.1| protein-export membrane protein SecD [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160431|gb|EGC72557.1| protein-export membrane protein SecD [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 616

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 149/524 (28%), Positives = 280/524 (53%), Gaps = 39/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE I
Sbjct: 104 NLAPATPAWLSSIGANPMKWGLDLRGGVRFLMEVDMNSALAKRQEQLQDTLRNELRKEKI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              +++       T++  ++      A  +                   +    +  +++
Sbjct: 164 QFTAIKNGDKFGTTVTLENADQMSKAARIIRQL-----------HPTLDVSDIGDNTLNL 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS+ ++ +  + AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++
Sbjct: 213 ALSEASLTESRNLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    + +    G+         D  G    +  +  + G H+  +++ 
Sbjct: 273 LGATATLEFRIVNSLVNPESAARGMLPSDTEIKYDRQGRPVALYKRAVLGGEHIINSSSG 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D  T  P V ++ D  G     + T+    KP+A +                       
Sbjct: 333 LDQHTSTPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKSEE 392

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q   S   QI+G  +   A  L+ +L++G+L   + IVEER +G  LG+ ++ 
Sbjct: 393 VINVATIQGRFSSNFQITGVSSSAEAQNLSMLLKSGALIAPVQIVEERTIGPSLGAQNVE 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A   GL+ +++FM+V Y  +G++A F++ +N++L + L+S+L  ATLT+P IAGIV
Sbjct: 453 QGIDASFWGLIAVIVFMLVYYKVFGIIASFALVINIVLLVGLMSILPGATLTMPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G++VD+N+L+ ERI+EE R  + +  +++ G++ A+++IFD+N+T ++  ++L+  G
Sbjct: 513 LTLGMSVDANVLIFERIKEEIRNGRPIQQAINEGYNGAFTSIFDANLTTILTAIILYAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G ++GFA+T+ L + ISMFTAI+  RA++ F+   K+++ + I
Sbjct: 573 TGPIQGFAVTLALGVAISMFTAITGTRAIVNFLYGGKRLEKLSI 616



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +GI       IA+++++ + +K  F + A   L+++I   +G  ++  
Sbjct: 441 TIGPSLGAQNVEQGIDASFWGLIAVIVFMLVYYKV-FGIIASFALVINIVLLVGLMSILP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +G SV+  V++++R+++ ++        +  I++  N        
Sbjct: 500 GATLTMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRPIQQAINEGYNGAFTSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   I  FA+ +A G+ ++  ++I     I+ F+Y  +    
Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAVTLALGVAISMFTAITGTRAIVNFLYGGKRLEK 613



 Score = 42.8 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  ++  IG L +LPN   +    +      +                 + D
Sbjct: 4   RYPLWKNLMVILVVAIGALYSLPNIYGEDPAVQISGTRGQ-----------------QAD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         E+++ LK+  +   S+      I   F ++  +    DK+   L
Sbjct: 47  ---------TTALTEVQNVLKENNLSTKSIVLENGSILARFNNTDDQLLAKDKIAEKL 95


>gi|329897045|ref|ZP_08271817.1| Protein-export membrane protein SecD (TC 3.A.5.1.1) [gamma
           proteobacterium IMCC3088]
 gi|328921485|gb|EGG28871.1| Protein-export membrane protein SecD (TC 3.A.5.1.1) [gamma
           proteobacterium IMCC3088]
          Length = 627

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 166/525 (31%), Positives = 269/525 (51%), Gaps = 36/525 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDL GG H  LEVD D  +    + Y   ++  L++  I
Sbjct: 107 NLAPTTPKWLTDLGAQPMKLGLDLSGGVHFKLEVDVDAALERRHEYYLTAVKKLLRENRI 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                   Q  +   +   + +E+           +  ++       L     +  + + 
Sbjct: 167 RGLVDLDEQGAVVSQYGSEQEREDAR-------GAIADEMPELMLDRLDEQEGQFGLKVS 219

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +++    Q+I +A+ Q++  +R R++++G+SE  +QR G +RI+++LPG QD +  +++L
Sbjct: 220 MTEQAKAQLIDYAVAQNLTTLRNRVNELGVSEPLVQRQGRNRIVVELPGIQDTAEAKRIL 279

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRF-LRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           G  A + F  V  +N++        +   D  G    +E  V I+G  ++ A A FD   
Sbjct: 280 GKVANLEFRLVASSNARPSEKQRFEYRSEDRLGMSEWLERDVIITGERVSNAAAGFDQNG 339

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301
            +P V IS D  G       TR+N+ + +                         +  D +
Sbjct: 340 -RPNVSISLDSEGGTLMSRATRNNVKRRMGVLFIERKYKTSYDVAADGSDVITKIPYDEK 398

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    + Q     + QI+G  +   A  LA MLRAG+L   ++ VEER VG  LG+++I
Sbjct: 399 RILTAPVIQQALGAQFQITGLDSPLEASELALMLRAGALAAPISFVEERTVGPSLGAENI 458

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G  ++  GL L+V+FM+V Y  +G VA  ++  N++L LA +SLLGATLTLP IAGIV
Sbjct: 459 ELGVKSVQIGLALVVIFMLVYYRAFGAVAVVALGCNLVLLLAFMSLLGATLTLPGIAGIV 518

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+  RIREE     S   ++  GF +A STI D+NIT LI  V+L+  G
Sbjct: 519 LTVGMAVDANVLIFSRIREELNGGSSAQMAIHKGFEQALSTILDANITTLIVAVILYAVG 578

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            G ++GFA+T+ L IL SMFTAI   RA++  I   +K+K++ I 
Sbjct: 579 TGPIKGFAVTLSLGILTSMFTAIIGTRALINLIYGGRKVKTLSIG 623



 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 105/277 (37%), Gaps = 5/277 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI        L+     N      G + +        D++   S++ +    D       
Sbjct: 344 SISLDSEGGTLMSRATRNNVKRRMGVLFIERKYKTSYDVAADGSDVITKIPYDEKRILTA 403

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +  Q+Q     +     E  +  +   +    +      VGP +  E I  G+ 
Sbjct: 404 PVIQQALGAQFQITGLDSPLEASELALMLRAGALAAPISFVEERTVGPSLGAENIELGVK 463

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V I    ++I++ + ++  F   A+  L  ++   L F +L G    L  +A ++  +G
Sbjct: 464 SVQIGLALVVIFMLVYYR-AFGAVAVVALGCNLVLLLAFMSLLGATLTLPGIAGIVLTVG 522

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +V+  V+++ R+R+ +       S +  I K   + L   +  ++   I  + +   G 
Sbjct: 523 MAVDANVLIFSRIREELNG---GSSAQMAIHKGFEQALSTILDANITTLIVAVILYAVGT 579

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             I  FA+ ++ GI+ +  ++I     ++  IY  R 
Sbjct: 580 GPIKGFAVTLSLGILTSMFTAIIGTRALINLIYGGRK 616


>gi|254504242|ref|ZP_05116393.1| protein-export membrane protein SecF [Labrenzia alexandrii DFL-11]
 gi|222440313|gb|EEE46992.1| protein-export membrane protein SecF [Labrenzia alexandrii DFL-11]
          Length = 302

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 120/284 (42%), Positives = 181/284 (63%), Gaps = 3/284 (1%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           M  R     +SI+  + S+   FT G+NYGIDFKGG  + +  + P D+  +RS L SLQ
Sbjct: 1   MWLRKISFPLSIVLVVASLAGFFTVGMNYGIDFKGGTIIEIKTDGPADIGFIRSELSSLQ 60

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
           +GDI  Q F    + L+R++ QPG  +AQ  V+  V+    +       +  E+VGP++S
Sbjct: 61  LGDIQVQEFGAPDDILIRIEEQPGGELAQQAVVAKVRTIFADDNVDF--RRVEVVGPRVS 118

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            EL R G + V  S +A++ YIW RF+W+FA+GAI T   D+  T+G F L  ++F+L++
Sbjct: 119 SELARAGAIAVAASLLAIMFYIWFRFEWHFAVGAILTTANDVVVTIGLFVLLQLDFSLSS 178

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +AAVLT+IGYS+ND VVVYDR+R+N++ Y       +++D+SINETL R+  TS+   ++
Sbjct: 179 IAAVLTIIGYSLNDTVVVYDRIRENLRKYKKR-PLTEILDQSINETLSRTTMTSVTTLLA 237

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +L + ++GG VI SF + M FGIV+   SSIF+AAP L+ +   
Sbjct: 238 LLALYIFGGEVIQSFTLAMIFGIVIGTYSSIFLAAPFLILLNLR 281


>gi|293390419|ref|ZP_06634753.1| protein-export membrane protein SecD [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950953|gb|EFE01072.1| protein-export membrane protein SecD [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 616

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 164/524 (31%), Positives = 285/524 (54%), Gaps = 39/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     N +  GLDLRGG   ++EVD +  ++   +   D LR+ L+KE  
Sbjct: 104 NLAPATPKWLSSIGGNPMKWGLDLRGGVRFLMEVDMNSALSKRQEQLQDSLRTELRKEKY 163

Query: 87  GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              +++ I N  T ++  +S             L  V   L        +  T+E  +S+
Sbjct: 164 QYSAIKSIDNFSTGVTLTNSEQ-----------LSDVQRYLRKQHPNLDVRATSENTLSL 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS + +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+++LPG QD +R +++
Sbjct: 213 GLSDSVLNEARESAIEQNLSILRKRVTELGVAEAVIQRQGAERIVVELPGVQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  + + +    G+         D +    ++  +  + G H+  A+  
Sbjct: 273 LGATATLEFRIVNASANLEAAARGMVPSDSEVKYDRNNRPVVLYKRAVLGGEHITNASYG 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D  T  P V ++ D  G     + TR N+ KP+A +      +                
Sbjct: 333 VDQNTSLPQVSVTLDSEGGEIMSQTTRLNLKKPMATLYVEYKDSGKKDENGKTILQKHEE 392

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q     + QI+G  +   A  LA +LR+G+L   + IVEER +G  LG+ ++ 
Sbjct: 393 VINVATIQGRFGSQFQITGIDSPAEAQNLAVLLRSGALIAPIQIVEERTIGPSLGAQNVE 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A   GL+++V FM++ Y K+G++A+ ++  N++L + L+SLL  ATLT+P IAGIV
Sbjct: 453 QGLQASFWGLMIVVAFMVIYYRKFGIIANIALIANIVLLVGLISLLPGATLTMPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G++VD+N+L+ ERI+EE R  + +  +++ G+S A+S+IFD+N+T ++  V L+  G
Sbjct: 513 LAVGMSVDANVLIFERIKEEIRNGRPIQQAINEGYSGAFSSIFDANLTTILTAVALYAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G ++GFAIT+ L I ISMFTAI+  RA++ F+   K++  + I
Sbjct: 573 TGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKRIDKLSI 616



 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 81/174 (46%), Gaps = 5/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +G+       + ++ ++ I ++  F + A   LI +I   +G  +L  
Sbjct: 441 TIGPSLGAQNVEQGLQASFWGLMIVVAFMVIYYR-KFGIIANIALIANIVLLVGLISLLP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +G SV+  V++++R+++ ++        +  I++  +        
Sbjct: 500 GATLTMPGIAGIVLAVGMSVDANVLIFERIKEEIR---NGRPIQQAINEGYSGAFSSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   ++ + +   G   I  FAI ++ GI ++  ++I     I+ F+Y  + 
Sbjct: 557 ANLTTILTAVALYAVGTGPIKGFAITLSLGIAISMFTAITGTRAIVNFLYGGKR 610



 Score = 44.7 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 37/118 (31%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   +  IG+L ALPN   +    +                RG         
Sbjct: 4   RYPLWKNLMVIFVVAIGILYALPNLYGEDPAVQISGT------------RG--------- 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                         +++S LK   +   S+      I + F ++  +    DK+T  L
Sbjct: 43  -----QEANSAVLSDVQSMLKDNNLTTKSIVLENGSILVRFNNTDTQLLAKDKITEKL 95


>gi|87307750|ref|ZP_01089893.1| protein-export membrane protein secD [Blastopirellula marina DSM
            3645]
 gi|87289364|gb|EAQ81255.1| protein-export membrane protein secD [Blastopirellula marina DSM
            3645]
          Length = 1276

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 68/225 (30%), Positives = 123/225 (54%), Gaps = 16/225 (7%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
             ++    S A+    ++      E+       ++  +G +++ ++ +  I  +++S + +
Sbjct: 1051 TEWTVQLSGAKENASKIFDSIRNELSSTPVWPSSSNIGAQVAGDMQQMAIFALVLSLVGV 1110

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLG----------FFALFGIE---FNLTAVAAV 726
            + YIW RF+   F L A+  L+ D+  TLG           F    I+    +L  VAA 
Sbjct: 1111 VAYIWFRFQNLAFGLAAVVALVHDVLITLGALALTTWLQYVFGFLQIDEMKISLPVVAAF 1170

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LTLIGYS+ND +VV+DR+R+ ++  +  ++  D+++ SIN+TLGR++ TS+  FI V+ +
Sbjct: 1171 LTLIGYSLNDTIVVFDRIRE-VRGKSHELTI-DMVNASINQTLGRTILTSLTTFIVVVIL 1228

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               GG  + SF+  +  GI V   SSIFIA+P+L+++ +   K  
Sbjct: 1229 FFLGGEGVHSFSFALVVGIFVGTYSSIFIASPVLVWLMNREKKRG 1273



 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 139/655 (21%), Positives = 255/655 (38%), Gaps = 87/655 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M    W + +      IG+   +  + P                  G+DL+GG  L+ E+
Sbjct: 115 MPTYGWRLAVIFCTMVIGVTAVVRYWPP----------------KFGIDLQGGVILIYEI 158

Query: 61  DEDD---FVNGF-------------------------LQMYSDELRSFLKKEGIGVFSMR 92
           DED+   ++                            +      L++ +   G+    +R
Sbjct: 159 DEDETKIYLAEQKKTGEDQKPSETESTADQDGGTAYNMNELLANLKNRVNPSGVREVVIR 218

Query: 93  QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
              + ++ +   ++   +     +   +            + ++V      ++++     
Sbjct: 219 AYGSKQVEVIIPNAESADLAV--IKDKITTA------GMLEFMIVANANDHVTLLNRARE 270

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
             Q             R  +   G +E     +                           
Sbjct: 271 SKQRGE----------RYVVSSTGRAEGKWVGIRKDEEGEYQWPNFGSFTASTDG----- 315

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                  P  +  GF+              +  +   ++G +L  A   +D       V+
Sbjct: 316 ------SPVQTSAGFLVRGGQSTGQPLQVLMKMEPKPLTGGYLTAARRTYDTNNGSLAVE 369

Query: 272 ISFDEMGARRFFEVTRDN----IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
            + +  GA    ++TRDN      +    ++    + +    Q +   +  I+G FT   
Sbjct: 370 FNLNSTGASLMSKLTRDNLPDDTRERQLGIVMDDYIVSAPSVQGVIGDRGIITGRFTEAD 429

Query: 328 AGILAAMLRAGSLPI--KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
              L  +L+AG LP+  +   + E+ + A LG D+I KG  A+   L L+++FM + Y  
Sbjct: 430 IEKLTGVLQAGKLPVVLRKEPISEQTISATLGDDTIRKGQWAVGISLSLVLVFMAIYYRV 489

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GLVA  ++ LN++L LA + L  A LTLP IAG+VL +G++VD+N+L+ ERIREE    
Sbjct: 490 AGLVACAAVLLNLVLILAAMILFNADLTLPGIAGLVLTVGMSVDANVLIYERIREELNHG 549

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            S+  +L  GFS+A +TI D+N+T LI  +VL+  G   VRGFA+T+ L I++SMFTAI 
Sbjct: 550 ASLRMALVNGFSKATTTIVDANLTTLITALVLYRIGTDQVRGFAVTLVLGIVMSMFTAIF 609

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
             R       + + + ++ + P +            F+  R   + IS++  +  +  + 
Sbjct: 610 CSRVFFDIAEKKRWLTTLKMMPTASG------AKFDFLGKRQMAMSISLVLIVIGVIAVG 663

Query: 566 THGLN-YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
             G   + IDF GG  + V     + ++ VR  +                K   +
Sbjct: 664 ARGKTIFDIDFNGGSSVQVYLKEALPIATVREMVSEKLPDVSISSVTLEGKENQI 718



 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 97/255 (38%), Gaps = 4/255 (1%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           ++  G   +  L    +        L  +    I              +           
Sbjct: 372 LNSTGASLMSKLTRDNLPDDTRERQLGIVMDDYIVSAPSVQGVIGDRGIITGRFTEADIE 431

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           ++  +++     +V      + + +   +  + IRKG   V IS   +L+++ I ++   
Sbjct: 432 KLTGVLQAGKLPVVLRKEPISEQTISATLGDDTIRKGQWAVGISLSLVLVFMAIYYRV-A 490

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L A   ++L++   L    LF  +  L  +A ++  +G SV+  V++Y+R+R+ +    
Sbjct: 491 GLVACAAVLLNLVLILAAMILFNADLTLPGIAGLVLTVGMSVDANVLIYERIREEL---N 547

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              S R  +    ++     V  ++   I+ L +   G   +  FA+ +  GIV++  ++
Sbjct: 548 HGASLRMALVNGFSKATTTIVDANLTTLITALVLYRIGTDQVRGFAVTLVLGIVMSMFTA 607

Query: 813 IFIAAPILLFIYDWR 827
           IF +          R
Sbjct: 608 IFCSRVFFDIAEKKR 622


>gi|121611002|ref|YP_998809.1| preprotein translocase subunit SecF [Verminephrobacter eiseniae
           EF01-2]
 gi|121555642|gb|ABM59791.1| protein translocase subunit secF [Verminephrobacter eiseniae
           EF01-2]
          Length = 321

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 157/301 (52%), Gaps = 4/301 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS +    ++  L T GL+  ++F GG  + +   +  D
Sbjct: 1   MEFFRIRKDIPFMKQALVFNAISFITFALAVVFLLTRGLHLSVEFTGGTVMELAYGQSAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKITEIVP 647
           L+ +R  + +L   ++  QNF   ++ ++RL     D        R  E V   +  + P
Sbjct: 61  LAKIRQTVSALGYPEVQVQNFGTARDVMIRLPTLNKDMDKSLTSARQSEQVLAALQAVDP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              ++ TE VGP++  EL+  G++ + +  I ++IY+ +RF+W F + AI   + D+   
Sbjct: 121 QVKLRRTEFVGPQVGEELVHGGLMALAMVVIGIVIYLALRFEWKFGVAAIIANLHDVVII 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGFFA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  + Y   +    +ID +I  
Sbjct: 181 LGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIREAFRKYRK-MDTAAVIDHAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +    VL M  +GG  +  FA+ +  GI+    SS+F+AA I +++   R
Sbjct: 240 TMSRTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKR 299

Query: 828 A 828
            
Sbjct: 300 E 300


>gi|146283379|ref|YP_001173532.1| preprotein translocase subunit SecD [Pseudomonas stutzeri A1501]
 gi|145571584|gb|ABP80690.1| secretion protein SecD [Pseudomonas stutzeri A1501]
          Length = 575

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 150/526 (28%), Positives = 266/526 (50%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD +  +   L +   E++S L+KE +
Sbjct: 60  NLAPTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMEKAIETRLNVSEGEVKSLLRKERV 119

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+  +++ + L FAD          +             D +        +  + + 
Sbjct: 120 RYRSLPNLKDAVQLGFADQETLSAAQSLIRKNF--------TDFELTTSERNGQFVLRLT 171

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L++  + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 172 LTEAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 231

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F     ++            R+       +E  + I+G  +  A A++D    
Sbjct: 232 GKTANLEFRLAAESD-APRASTETFEFREEGRPPVQLERTLIITGDQVTDAQASYDENG- 289

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA--------------- 311
           +P V+I  D  G       TR N+G+ +AV+   +      + Q                
Sbjct: 290 RPQVNIRLDGHGGDLMNRATRSNVGRSMAVIFIEQRPLTRYVRQMVDGVEQEVRVETFQE 349

Query: 312 ------------IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                           + +I+G      +  LA +LRAG L   +   EER +G  LG++
Sbjct: 350 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAE 409

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I  G  A + G + + +FM+++Y  +G++A  ++  N++   AL+S+L ATLTLP IAG
Sbjct: 410 NIKLGVQAAMWGFLFVAIFMVLIYKFFGVLATIALLFNMVALTALMSMLNATLTLPGIAG 469

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     S+  ++  GF RA+S I D N+T L+   +LF 
Sbjct: 470 IVLTMGMAVDANVLIFSRIREEIANGMSIQRAIHEGFDRAFSAILDGNLTTLLVGGILFA 529

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G ++GFA+T+ + IL SMFTAI + R M+  I   + +K + I
Sbjct: 530 MGTGPIKGFAVTLSIGILTSMFTAIIVTRGMVNLIYGGRDLKKLWI 575



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 82/204 (40%), Gaps = 4/204 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +         +  +   +           +GP +  E I+ G+   +   + + I++ + 
Sbjct: 373 NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIKLGVQAAMWGFLFVAIFMVLI 432

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +K+ F + A   L+ ++       ++      L  +A ++  +G +V+  V+++ R+R+ 
Sbjct: 433 YKF-FGVLATIALLFNMVALTALMSMLNATLTLPGIAGIVLTMGMAVDANVLIFSRIREE 491

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +      +S +  I +  +      +  ++   +    +   G   I  FA+ ++ GI+ 
Sbjct: 492 IA---NGMSIQRAIHEGFDRAFSAILDGNLTTLLVGGILFAMGTGPIKGFAVTLSIGILT 548

Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831
           +  ++I +   ++  IY  R    
Sbjct: 549 SMFTAIIVTRGMVNLIYGGRDLKK 572


>gi|28868622|ref|NP_791241.1| protein-export membrane protein SecD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213971536|ref|ZP_03399647.1| protein-export membrane protein SecD [Pseudomonas syringae pv.
           tomato T1]
 gi|301386141|ref|ZP_07234559.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060703|ref|ZP_07252244.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           tomato K40]
 gi|28851860|gb|AAO54936.1| protein-export membrane protein SecD [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213923728|gb|EEB57312.1| protein-export membrane protein SecD [Pseudomonas syringae pv.
           tomato T1]
 gi|331019398|gb|EGH99454.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 622

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 166/539 (30%), Positives = 275/539 (51%), Gaps = 46/539 (8%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE     S+ Q+ N I L F D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKARYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTRQMVN 383

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 384 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 443

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + +F++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 444 AEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRFFGLIATVALALNMVMLLALMS 503

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 504 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 563

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 564 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 622



 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                R +   V +         +    +    ++ L       G +         +  +
Sbjct: 374 TTTYTRQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + I+I   +++ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSIFIMAIYRF-FGLIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDFKK 619



 Score = 43.5 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/118 (11%), Positives = 30/118 (25%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D                      +   S+ +      L  +    +    D V   L
Sbjct: 51  VDRAAKALTDA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKAL 98


>gi|113969727|ref|YP_733520.1| preprotein translocase subunit SecF [Shewanella sp. MR-4]
 gi|117919886|ref|YP_869078.1| preprotein translocase subunit SecF [Shewanella sp. ANA-3]
 gi|113884411|gb|ABI38463.1| protein translocase subunit secF [Shewanella sp. MR-4]
 gi|117612218|gb|ABK47672.1| protein translocase subunit secF [Shewanella sp. ANA-3]
          Length = 315

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 166/287 (57%), Gaps = 3/287 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + F+R       +S +    S+  L T G+N+G+DF GG  + +   +PVDL+V+R+ 
Sbjct: 9   RTVNFLRHALPISIMSAILVFGSLVSLATKGINWGLDFTGGTVVEMEFTQPVDLNVLRTK 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L + ++     QNF   ++ LVRL  + G S      ++ V     ++      +  E V
Sbjct: 69  LSAPELDGAVVQNFGSSRDVLVRLSVKEGVSSDVQ--VKSVMAAAQQVDAGVQQKRVEFV 126

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++ +EL  +G + V+++ I ++IY+  RF+W  A G++  L  D+  TLG F++F +E
Sbjct: 127 GPQVGKELAEQGGLAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSVFQLE 186

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +A VLT++GYS+ND +VV+DR+R+N      S    ++++ SI +T+ R++ T+ 
Sbjct: 187 FDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKSEP-EEVVNVSITQTMSRTIITTG 245

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
              ++V+ + + GG++I  FA  +  GI V   SSI++A+ + + + 
Sbjct: 246 TTLVTVVALFLKGGTMIHGFATALLLGIFVGTYSSIYVASYLAIKLG 292


>gi|329298301|ref|ZP_08255637.1| preprotein translocase subunit SecD [Plautia stali symbiont]
          Length = 615

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 162/538 (30%), Positives = 284/538 (52%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L           +    + LGLDLRGG H ++EVD D  +    + 
Sbjct: 99  FVVALNLAPATPRWLT---------MLAAEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 149

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
            +D LRS L+++ I   ++ +I N  T + F D   ++              S L    +
Sbjct: 150 NADGLRSDLREKNIPYTNVSKIANYGTEIRFRDGASRDAAI-----------SYLTPRHR 198

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             ++ +     +  ++    + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI++
Sbjct: 199 DLVITSAGSDTLRAMMIDARLSEAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVV 258

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  +        G         +  +G   ++  +
Sbjct: 259 ELPGIQDTARAKEILGATATLEFRLVNTSVDPSAAASGRVPGDSEVKKTREGQPVVLYKR 318

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T++   + ++P V+IS D  G       T+DNIGKP+A +      +  
Sbjct: 319 VILTGDHITDSTSS-MDEYNQPQVNISLDGAGGNIMSNFTKDNIGKPMATLFVEYKDSGK 377

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                Q+      +I+G      A  L+ +LRAG+L   + IVE
Sbjct: 378 KDANGRAILVKQEEVINVANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVE 437

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  +G  +I +G  A + GL+  ++FM+V Y K+GL+A  ++  N++L + ++SLL
Sbjct: 438 ERTIGPTMGQQNITQGLEACLCGLIASIIFMVVFYKKFGLIATSALLCNLVLIVGIMSLL 497

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N
Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDAN 557

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +T LI  ++L+    G+++GFAIT  + I  SMFTAI   RA++  +   K++  + I
Sbjct: 558 VTTLIKVIILYAVSTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLVYSGKRINKLSI 615



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/177 (19%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP + ++ I +G+   +   IA +I++ + +K  F L A + L+ ++   +G  +L  
Sbjct: 440 TIGPTMGQQNITQGLEACLCGLIASIIFMVVFYK-KFGLIATSALLCNLVLIVGIMSLLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +         V 
Sbjct: 499 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHEGYKGAFSSIVD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I V+ +       I  FAI  A GI  +  ++I     I+  +Y  +  N 
Sbjct: 556 ANVTTLIKVIILYAVSTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLVYSGKRINK 612


>gi|15613800|ref|NP_242103.1| preprotein translocase subunit SecF [Bacillus halodurans C-125]
 gi|10173853|dbj|BAB04956.1| protein-export membrane protein [Bacillus halodurans C-125]
          Length = 311

 Score =  206 bits (522), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 9/287 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I F++ R     IS LF++  I +L T GLN GIDF+ G ++ V     +    V++  E
Sbjct: 8   IDFVKHRKKFFLISGLFTLIGIIVLLTFGLNLGIDFESGSRIEVQGESTLTSEEVQAEFE 67

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           ++                      +       + +                + N   V P
Sbjct: 68  AIGFEPDDITLAGNNNELAYATFSRDLSEEEISTIQNHF------NDAYGLMPNISTVSP 121

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            + +EL R  ++ V+I+ I ++IY+ IRF+  + + AI  L  D    +  F+L  IE N
Sbjct: 122 TVGKELARNALISVLIALIGIIIYVTIRFELLYGVAAIVALFHDAFFIIAIFSLLQIEVN 181

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI---SFRDLIDKSINETLGRSVYTS 776
           +  +AAVLT++GYS+ND +V +DR+R+NMK            D+++KS+ +TL RS+   
Sbjct: 182 VPFIAAVLTIVGYSINDTIVTFDRIRENMKYAKRVKGFDDLADIVNKSLVQTLARSINMV 241

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +    +   + V+GG  I SFA  +  G+V    SS+F+A+ + L  
Sbjct: 242 LTVMFAAAAIFVFGGEAIRSFAFALLIGLVAGTYSSMFLASQLWLVW 288


>gi|94501958|ref|ZP_01308466.1| protein-export membrane protein SecD [Oceanobacter sp. RED65]
 gi|94425900|gb|EAT10900.1| protein-export membrane protein SecD [Oceanobacter sp. RED65]
          Length = 623

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 149/524 (28%), Positives = 262/524 (50%), Gaps = 36/524 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       ++LGLDL GG H ++EVD   F+   +  Y D L+   ++E +
Sbjct: 106 NLAPTTPQWLVDMGAGPMTLGLDLSGGVHFLMEVDMQQFLTQRIDGYRDTLKRNFREERL 165

Query: 87  GVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
                +   + +I   F D   ++   + V        +    +             + +
Sbjct: 166 RYKRAVLDEEKRIKYEFIDEETRDKAENFVRREYAEFLTDTRDE--------EGRHWLVL 217

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            ++   I ++  +A++Q++  IR R++++G++E  +QR G +RI+I+LPG QD +  +++
Sbjct: 218 TMTPAKIKELEDYALKQNLTTIRNRVNELGVAEPMVQRQGRNRIVIELPGVQDTAAAKKI 277

Query: 206 LGTTAKMSFHK-VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           LG  A + F     P  S+           +       +E  V ++G +++ A   FD  
Sbjct: 278 LGKAANLEFRLEAKPGASRFSSEEFEFKNPERGRTSARLEKSVIVTGDNVSNAQPAFDEN 337

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI---------------- 308
             +P V+I+ D  G     +VT+  I + + V+          +                
Sbjct: 338 G-QPQVNITLDSTGGALMGKVTKKAIKRRMGVLFIEHKTRTRYVERDGVEVPVEDKYTEK 396

Query: 309 ------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                       G +          A  LA +LRAG+L   +  VEER VG  +G ++I 
Sbjct: 397 KIISLATIQSALGSSFRITGLQAAEASELALLLRAGALAAPMYFVEERTVGPSMGKENID 456

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G  ++  GL L+++FMI  Y  +GL+A+ ++ +N+ L  A++S LGATLTLP IAGIVL
Sbjct: 457 LGVTSVKLGLALVLIFMIAYYRVFGLIANVALAVNLTLLTAVMSALGATLTLPGIAGIVL 516

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+  RI+EE +   +V  ++  G+ +A+ TI D+NIT LI  ++LF  G 
Sbjct: 517 TVGMAVDANVLIFARIKEELKSGMNVQQAIHSGYDKAFLTILDANITTLIVAIILFAVGT 576

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           G V+GFA+T+ + I+ SMFTAI + RA++  I   ++++ I I 
Sbjct: 577 GPVKGFAVTLSIGIITSMFTAIMVTRALVNLIYGGRRLQKIAIG 620



 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 88/216 (40%), Gaps = 4/216 (1%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +   ++     A       +  +   +           VGP + +E I  G+  V +
Sbjct: 405 QSALGSSFRITGLQAAEASELALLLRAGALAAPMYFVEERTVGPSMGKENIDLGVTSVKL 464

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
               +LI++   ++  F L A   L +++T      +  G    L  +A ++  +G +V+
Sbjct: 465 GLALVLIFMIAYYRV-FGLIANVALAVNLTLLTAVMSALGATLTLPGIAGIVLTVGMAVD 523

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             V+++ R+++ +K   + ++ +  I    ++     +  ++   I  + +   G   + 
Sbjct: 524 ANVLIFARIKEELK---SGMNVQQAIHSGYDKAFLTILDANITTLIVAIILFAVGTGPVK 580

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            FA+ ++ GI+ +  ++I +   ++  IY  R    
Sbjct: 581 GFAVTLSIGIITSMFTAIMVTRALVNLIYGGRRLQK 616



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF 35
          +   W   L  +I  +G++ ALPN  P     + 
Sbjct: 4  KYPLWKYCLILVISVLGVVYALPNLYPPDPAVQI 37


>gi|134294793|ref|YP_001118528.1| preprotein translocase subunit SecD [Burkholderia vietnamiensis G4]
 gi|134137950|gb|ABO53693.1| protein-export membrane protein SecD [Burkholderia vietnamiensis
           G4]
          Length = 673

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 158/516 (30%), Positives = 268/516 (51%), Gaps = 25/516 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 109 VVALNLQSASPRWLTAIHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ + I    + ++   + ++F+D++  E+    +   +  +           
Sbjct: 160 ATDARALLRDKNIRDGGVSRVDQSVVVNFSDAQTAEDALKALAASITELQWATQP----- 214

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ GS RI+++L
Sbjct: 215 ---GGGGTQVVGTFTPAVQKSVEDAALKQNLTTLHNRVNELGVSEPILQQQGSDRIVVEL 271

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF----MFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P N+          G       +    L++  V  
Sbjct: 272 PGVQDTAKAKDIIGRTATLEARLADPINTHPNPNDPVPPGEELFTQGNQAPVLLKKDVIF 331

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 332 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRSVRAVSRENIGKPMAMVLFEKGKGEVLTV 390

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 391 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVH 450

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G   I +FM+  Y  +G+++   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 451 SVIWGFCAIAVFMVAYYMLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGM 510

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NER+REE R  Q    ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 511 AIDSNVLINERVREELRAGQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 570

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FAI   L IL SMF+A+   R ++      +K   
Sbjct: 571 AFAIVHCLGILTSMFSAVFFSRGIVNLWYGGRKKLK 606



 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 35/209 (16%), Positives = 86/209 (41%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + I+ G+  VI    A+ +++
Sbjct: 404 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKMGVHSVIWGFCAIAVFM 463

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L +++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 464 VAYY-MLFGVISVIGLSVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERV 522

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++        +  I           + +++   I+ L +  +G   + +FAI    G
Sbjct: 523 REELRA---GQPPQLAIQSGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 579

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  I+   Y  R K   +
Sbjct: 580 ILTSMFSAVFFSRGIVNLWYGGRKKLKSL 608


>gi|292487440|ref|YP_003530312.1| protein-export membrane protein SecD [Erwinia amylovora CFBP1430]
 gi|292898682|ref|YP_003538051.1| protein-export membrane protein [Erwinia amylovora ATCC 49946]
 gi|291198530|emb|CBJ45638.1| protein-export membrane protein [Erwinia amylovora ATCC 49946]
 gi|291552859|emb|CBA19904.1| Protein-export membrane protein secD [Erwinia amylovora CFBP1430]
 gi|312171543|emb|CBX79801.1| Protein-export membrane protein secD [Erwinia amylovora ATCC
           BAA-2158]
          Length = 615

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 156/518 (30%), Positives = 280/518 (54%), Gaps = 37/518 (7%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + + +    + LGLDLRGG H ++EVD D  +        D LRS L+++ +   ++R
Sbjct: 110 PAWLATLSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSVPYVNVR 169

Query: 93  QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +  N  + + F D + ++     +T   +             ++ ++    ++ V+S   
Sbjct: 170 KTGNYGLEIRFRDDKTRDEAVSYLTTRHR-----------DMVINSSGSNALTAVMSDER 218

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++LG TA 
Sbjct: 219 MREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATAT 278

Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  +        G            +G   ++  +V ++G H+  +T++ D    
Sbjct: 279 LEFRLVNTSVDATAAANGRVPGDSEVKDTREGQPVVLYKRVILTGDHITDSTSSNDEYN- 337

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
           +P V+IS D  G       T+D++GK +A +      +                      
Sbjct: 338 QPQVNISLDSAGGNIMSNFTKDSVGKAMATLFVEYKDSGKKDANGRAILEKHEEVINVAN 397

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  +G+ +I +G  A 
Sbjct: 398 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEAC 457

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GL+  ++FM+V Y K+GLVA  ++  N++L + ++SLL  ATLT+P IAGIVL + +A
Sbjct: 458 LWGLIASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA 517

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  ++L+  G G+++G
Sbjct: 518 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 577

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 578 FAITTAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI 615



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 96/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++        N    ++ L       G +         +  +   
Sbjct: 369 FVEYKDSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 428

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++ + +K  F L A + L+ ++
Sbjct: 429 LIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK-KFGLVATSALLANL 487

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +
Sbjct: 488 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    V  ++   I V+ +   G   I  FAI  A G+  +  ++I     I+  +
Sbjct: 545 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLM 604

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 605 YGGKRINK 612


>gi|261822532|ref|YP_003260638.1| preprotein translocase subunit SecD [Pectobacterium wasabiae
           WPP163]
 gi|261606545|gb|ACX89031.1| protein-export membrane protein SecD [Pectobacterium wasabiae
           WPP163]
          Length = 604

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 164/538 (30%), Positives = 287/538 (53%), Gaps = 46/538 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L  A P +L     +          + LGLDLRGG H ++EVD D  +    + 
Sbjct: 88  FVVALNLAPATPTWLRLLGAE---------PMKLGLDLRGGVHFLMEVDMDTALGKLQEQ 138

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D LRS L+++ I   ++R+I N  + + F D++ +++    +T   + +         
Sbjct: 139 TMDSLRSDLREKNIPYAAVRKIDNYGVEIRFRDAQTRDDGLSYLTSRHRNL--------- 189

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             +L ++    +  V+S   + +   +A++Q++ I+R R++Q+G++E  +QR GS RI++
Sbjct: 190 --VLSSSGGNLMRAVMSDERLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVV 247

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDK 246
           +LPG QD +R +++LG TA + F  V  +        G            DG+  ++  +
Sbjct: 248 ELPGIQDTARAKEILGATATLEFRLVNSDADATAAANGRVPGDSEVKNMRDGSPVVLFKR 307

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++G H+  +T++ D    +P V+IS D  G       T+D+IGK +A +      +  
Sbjct: 308 VILTGDHITDSTSSNDEYN-RPQVNISLDSAGGNTMSNFTKDSIGKLMATLFVEYKDSGK 366

Query: 307 ------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                Q+      +I+G      A  L+ +LRAG+L   + IVE
Sbjct: 367 KDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGALIAPIQIVE 426

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG  +I +G  A + GL+  +LFM+  Y K+G++A  ++  N++L + ++SLL
Sbjct: 427 ERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYKKFGVIATSALVANLVLIVGVMSLL 486

Query: 409 G-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLT+P IAGIVL + +AVD+N+L+NERI+EE    +S+  ++  G+  A+S+I D+N
Sbjct: 487 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELSNGRSIQQAIHEGYKGAFSSIVDAN 546

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +T LI  ++L+  G G+++GFAIT  + I  SMFTAI   RA++  +   K++  + I
Sbjct: 547 VTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLLYGGKRINKLSI 604



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +   S+        N    ++ L       G           +  +   
Sbjct: 358 FVEYKDSGKKDATGRSILEKHEEVINVATIQSRLGNSFRITGIDNPNEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++   +K  F + A + L+ ++
Sbjct: 418 LIAPIQIVEERTIGPTLGMQNITQGLEACLWGLIASILFMVFFYK-KFGVIATSALVANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ +   +   S +  I +
Sbjct: 477 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRSIQQAIHE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    V  ++   I V+ +   G   I  FAI  A GI  +  ++I     I+  +
Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGIATSMFTAIVGTRAIVNLL 593

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 594 YGGKRINK 601


>gi|229592459|ref|YP_002874578.1| preprotein translocase subunit SecD [Pseudomonas fluorescens SBW25]
 gi|229364325|emb|CAY52076.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Pseudomonas fluorescens SBW25]
          Length = 623

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 163/526 (30%), Positives = 273/526 (51%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +       + LGLDL GG H +LEVD D  ++  L++Y  +++S L+KE +
Sbjct: 108 NLAQTTPAWLRSIGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKL 167

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q+   I L FAD   +E     +          +  D     ++        + 
Sbjct: 168 RYRSLPQLNGAIQLGFADEASREQARALIRKNFND-FDIVPADLNGQAVLR-------LA 219

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S   I ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 220 MSPAKIAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRIL 279

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F       + +         R+ +    L+E  + I+G  +  A A F     
Sbjct: 280 GKTANLEFRLAAEPGATRA-TSEEFEFREGNRPPALIERGLIITGDQVTDAKAGFGEHGT 338

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299
            P V+I  D  G       TR N+G+ +                               +
Sbjct: 339 -PEVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQRPVTTYTKQMVNGVEKDVPVQTFKE 397

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            + + +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 398 EKKIISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 457

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+I +Y  +G++A  ++  N+++ LAL+SLLGATLTLP IAG
Sbjct: 458 NITKGVDAALWGMLFVSLFIIAIYRFFGIIATVALAGNMVMLLALMSLLGATLTLPGIAG 517

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     +V  +++ GF RA++ I DSN+T L+   +LF 
Sbjct: 518 IVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFA 577

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 578 MGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 623



 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 94/250 (37%), Gaps = 5/250 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       ++ V  ++      +             +  Q++      Q    E+     
Sbjct: 375 VTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGLNGQGESSELALLLR 434

Query: 643 TEIVPLSTIQNTE-IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +        E  +GP +  + I KG+   +   + + ++I   +++ F + A   L 
Sbjct: 435 AGGLAAPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAIYRF-FGIIATVALA 493

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 494 GNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMTVQRAI 550

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++         + +++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 551 NEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 610

Query: 822 FIYDWRAKNA 831
            I+  R    
Sbjct: 611 LIFGGRDFKK 620


>gi|253574930|ref|ZP_04852270.1| protein-export membrane protein SecF [Paenibacillus sp. oral taxon
           786 str. D14]
 gi|251845976|gb|EES73984.1| protein-export membrane protein SecF [Paenibacillus sp. oral taxon
           786 str. D14]
          Length = 301

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 160/305 (52%), Gaps = 9/305 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              +     + ++    +   +SI+ +I  I  L   GLNY +DFK G  + +  ++P+ 
Sbjct: 1   MTFVSFKKNLDYIHLSKYFYTLSIVLTIAGIICLAFFGLNYSVDFKAGSNVDISLSKPLT 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              VR  L+++ I +       G+    +R           +   +   K     +    
Sbjct: 61  ADQVRPILKNMGIEENEASISPGQDRMNIRFT------QVLSEENDAKLKAEIAKLDDKA 114

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                 V P++++EL R  I  V+IS I ++IY+ IRF+W FA+ AI  L+ D    +  
Sbjct: 115 SFEVNTVDPEMAKELARNAIYAVLISCIGIIIYVGIRFEWRFAVAAIIALLHDAFMVISV 174

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINET 768
           F++F +E +LT + AVLT+IGYS+ND +V++DR+R+N++     T     +L++ S+++T
Sbjct: 175 FSIFRLEVDLTFIVAVLTIIGYSINDTIVIFDRIRENLRFAKTKTRQDLINLVNVSVSQT 234

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + RS+YT++  F++   + + GG  I  F++ M  G++  A SSIFIA+P+   +   + 
Sbjct: 235 IMRSLYTALTVFVAAFFLLILGGESIRMFSLAMVIGLLFGAYSSIFIASPLWFLLKSKQK 294

Query: 829 -KNAR 832
            K A+
Sbjct: 295 HKPAK 299


>gi|253681545|ref|ZP_04862342.1| protein-export membrane protein SecF [Clostridium botulinum D str.
           1873]
 gi|253561257|gb|EES90709.1| protein-export membrane protein SecF [Clostridium botulinum D str.
           1873]
          Length = 289

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 81/286 (28%), Positives = 144/286 (50%), Gaps = 5/286 (1%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS++  +  +  L   GLNYGIDFKGG  + +      +   ++   +++   
Sbjct: 7   KTKLWFTISLILILIGMSFLGIKGLNYGIDFKGGTIVTIEMGNNFN-QKIKEQADNIIKK 65

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                +        + ++    DS +  ++   +K K         + +   VGP +  E
Sbjct: 66  YDKTASSYIANKTQLEIKSNNLDSDSINKMFGELKTKYKLKDK--ALISQNKVGPSVGNE 123

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L +K +  +II+ IAMLIYI  RF+  F + AI  L+ DI  TLG +A+  I  N   +A
Sbjct: 124 LKKKSLGALIIATIAMLIYIGFRFEIKFGIAAILGLVHDILITLGVYAITQIPVNTPFIA 183

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +V++DR+R+N +         ++++ SI +T+ RS+ T +    +++
Sbjct: 184 AMLTIVGYSINDTIVIFDRIRENKRKL-RGRDMVEIVNLSITQTMSRSINTVLTTLFTIV 242

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            + V+    +  F  P+  GIV  A SSIFI++PI + +  +    
Sbjct: 243 AVYVF-VPAVRDFTFPLIIGIVCGAYSSIFISSPIWILLRKFGKNK 287


>gi|224418272|ref|ZP_03656278.1| preprotein translocase subunit SecF [Helicobacter canadensis MIT
           98-5491]
 gi|253827596|ref|ZP_04870481.1| protein export protein SecF [Helicobacter canadensis MIT 98-5491]
 gi|253511002|gb|EES89661.1| protein export protein SecF [Helicobacter canadensis MIT 98-5491]
          Length = 323

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 85/304 (27%), Positives = 167/304 (54%), Gaps = 4/304 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                      F++   +G+ +S++  I S+ L    G   G+DF GG  + +  ++   
Sbjct: 1   MDFFKHNKIYDFVKMSNYGIVLSLILFIGSLILFVKPGFTLGVDFAGGTIIQIQYSKEAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +R  LES++    +  +  G    ++        SV Q    E+    + +      
Sbjct: 61  LADIRQKLESVEDFKGAQVSEFGSPQEILIRLATATSSVNQDIGEEV--TNLLKDTGDFQ 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  +IVGPK+  EL  KGI+ + ++ I+++ Y+  R++W FAL +I  LI D+    G 
Sbjct: 119 IRRVDIVGPKVGDELREKGILALTLAIISIMAYVAYRYEWRFALASILALIHDVVIAAGA 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF ++ +L  +AA+LTLIGYS+ND ++++DR+R+ +     S + +++++++++ TL 
Sbjct: 179 VVLFDVDLSLEVIAALLTLIGYSINDTIIIFDRIRETIG-MRASNNLKEVVNEALSATLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY-DWRAK 829
           R++ TS+  F  VL + ++GG +I  F++PM  G +V + SSIF+A+ +++ +  D    
Sbjct: 238 RTMLTSLTVFFVVLTLYLFGGEIIKGFSLPMLIGSIVGSYSSIFVASKLVMILGFDLEKY 297

Query: 830 NARI 833
           + ++
Sbjct: 298 HKKL 301


>gi|119897195|ref|YP_932408.1| preprotein translocase subunit SecD [Azoarcus sp. BH72]
 gi|119669608|emb|CAL93521.1| protein-export membrane protein SecD [Azoarcus sp. BH72]
          Length = 624

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 174/520 (33%), Positives = 277/520 (53%), Gaps = 32/520 (6%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL A P++L                + LGLDLRGG H +L++D    +   L   
Sbjct: 106 VVALNLLSASPSWLTSIHA---------LPMYLGLDLRGGVHFLLQLDMPGALLKRLDAL 156

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           S +LR+ ++ + +    + +    + + F ++  +E     +                  
Sbjct: 157 SGDLRTLMRDKNVRHAGITREGTTVVIRFREAAQREAARSAIQ----------GSTADLQ 206

Query: 134 LLVTTTEKEI---SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           L+      E       L+      +  +AI+Q++  +  RI+++G++E  IQ+ G+ RI+
Sbjct: 207 LVDRDDGSEDLKLIATLTPQAQQTMREYAIKQNISTLHNRINELGVAEPVIQQQGAERIV 266

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLP------NNSKKGFMFGVRFLRDSDGNQYLVE 244
           +QLPG QD ++ + +LG TA +    V                FG    R+      LV+
Sbjct: 267 VQLPGVQDVAKAKDILGRTATLEVRMVDDTPGALEQALTGNVPFGTELYRERGRGPLLVK 326

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDG 300
            +V ++G  L  A   FD +T++  V ++ D  GAR F ++TR+N+GK +         G
Sbjct: 327 KQVVLTGERLTDAQPGFDGQTNEAAVHLTLDAAGARIFRDLTRENVGKRMAILLIEKGKG 386

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            V+TAPVI   I  G+ QISG+     A  +A +LRAGSL   + I+EER VG  LG+++
Sbjct: 387 EVVTAPVIRTEIGGGRVQISGSMNTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAEN 446

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I KG  + + G V I +FM V Y  +GLV+  ++  N++L +ALLSLL ATLTLP IA +
Sbjct: 447 IAKGFHSTLWGFVAIAVFMCVYYAVFGLVSTLALAANLLLLVALLSLLQATLTLPGIAAM 506

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+A+D+N+L+NERIREE R   S   ++  G+ RA+STI DS++T+LIA + L  F
Sbjct: 507 ALALGMAIDANVLINERIREELRNGVSPQAAIAAGYDRAFSTILDSSVTSLIAGIALLVF 566

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G G VRGFA+   L +L SMF+AI + R ++  I   ++ 
Sbjct: 567 GSGPVRGFAVVHCLGLLTSMFSAILVSRMLINLIYGRRRK 606



 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 89/212 (41%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     VGP +  E I KG    +   +A+ 
Sbjct: 403 VQISGSMNTVEANDVALLLRAGSLAAPMEIIEERTVGPSLGAENIAKGFHSTLWGFVAIA 462

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + +   F L +   L  ++   +   +L      L  +AA+   +G +++  V++ 
Sbjct: 463 VFMCVYYAV-FGLVSTLALAANLLLLVALLSLLQATLTLPGIAAMALALGMAIDANVLIN 521

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +S +  I    +      + +S+ + I+ + + V+G   +  FA+  
Sbjct: 522 ERIREELR---NGVSPQAAIAAGYDRAFSTILDSSVTSLIAGIALLVFGSGPVRGFAVVH 578

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G++ +  S+I ++  ++  IY  R K  ++
Sbjct: 579 CLGLLTSMFSAILVSRMLINLIYGRRRKIDKL 610



 Score = 39.3 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 33/121 (27%), Gaps = 26/121 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  IL  +    GL+  LPNF  +                            ++V 
Sbjct: 3   RYPLWKNILIGLALLWGLIYTLPNFYGEVPA-------------------------VQVS 37

Query: 62  EDDFV-NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                        +D + + L+  GI    +    N +   FA +  +    D +     
Sbjct: 38  SAKATLKLEPASVTDRVAAILQGAGIEHDGIFADANSVRARFASTELQLRAKDAIERAFN 97

Query: 121 G 121
            
Sbjct: 98  T 98


>gi|268680240|ref|YP_003304671.1| protein-export membrane protein SecF [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618271|gb|ACZ12636.1| protein-export membrane protein SecF [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 323

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 162/292 (55%), Gaps = 3/292 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM+     V  ++  +  S+ L+ T G +YG+DF GG  + +       L  +R +L 
Sbjct: 10  YNFMKYGRSFVLSTLFLAAISLVLIVTKGFDYGVDFAGGTVVQIKYEAKAPLDKIREDLA 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             ++   +     G    +V        S +  + +    + + +      I+  +IVGP
Sbjct: 70  KDKMFAGAQITEFGSDEEIVIRFSTV--SESVGQDIGDHIRTLLKDTGSFDIRKIDIVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           KI  EL  KGI+  I++ I +LIY+ +RF+W FA+ +I TL+ DIT TLG   LF IE +
Sbjct: 128 KIGSELREKGIISAILAVIGILIYVAVRFEWKFAVASIITLVHDITITLGAIILFNIEIS 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVLTLIGYS+ND ++++DR+R+ ++  T +++F ++I+  +++TL R+  TS+  
Sbjct: 188 LDVLAAVLTLIGYSLNDTIIIFDRIREELEE-TKNMNFSEIINICVSKTLSRTTITSLLV 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           F  VL + ++GG +I  F+  M  G+++   SSIFI+AP L  I     K  
Sbjct: 247 FFVVLTLYIFGGEIIHGFSFTMLLGVIIGTYSSIFISAPFLTLIGFSVEKYK 298


>gi|152978723|ref|YP_001344352.1| preprotein translocase subunit SecD [Actinobacillus succinogenes
           130Z]
 gi|150840446|gb|ABR74417.1| protein-export membrane protein SecD [Actinobacillus succinogenes
           130Z]
          Length = 616

 Score =  205 bits (521), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 152/524 (29%), Positives = 282/524 (53%), Gaps = 39/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     + +  GLDLRGG   ++EVD +  ++   +   D +++ L+KE I
Sbjct: 104 NLAPATPAWLSSIGGSPMKWGLDLRGGVRFLMEVDMNTALSKRQEQLQDSIKTELRKEKI 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              +++  +N    ++  +   +      +                   +  T +  IS+
Sbjct: 164 QYAAVQNGENFSSIVTLVNPEQRFPALQLLRKA-----------HPNLTVTDTNDTTISL 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS   + +    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+++LPG QD +R +++
Sbjct: 213 ALSDAALIEARDSAIEQNLNILRKRVGELGVAEAVIQRQGAERIVVELPGIQDTARAKEI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N + +     +           DG    +  K  + G H+  ++A 
Sbjct: 273 LGATATLEFRLVNTNVTPEAMRRNIVPSDTEIQYQPDGTPVALFKKSMLGGEHIINSSAG 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D +T    V ++ D  G     ++T+ N+ KP+A +      +                
Sbjct: 333 IDNQTGGTQVSVTLDAEGGDIMSQITKLNLKKPMATLYVEYKDSGKKDANGKVVLEKHAE 392

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q       QI+G+ T+  A  L+ +LR+G+L   + IVEER VG  LG+ ++ 
Sbjct: 393 VISVATIQGRFGSNFQITGSGTMAEAQNLSVLLRSGALIAPIQIVEERTVGPSLGAQNVE 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A + GL ++++F ++ Y  +G +A  ++ +N+IL + L+SLL  ATLT+P IAGI+
Sbjct: 453 QGLKAGLWGLAIVIVFCLIYYKLFGFIACLALCVNMILVVGLMSLLPGATLTMPGIAGII 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G++VD+N+L+ ERI+EE R  + +  ++D G++ A+++IFD+N+T ++ ++VL+  G
Sbjct: 513 LSVGMSVDANVLIFERIKEEIRNGRPIQQAIDEGYNGAWTSIFDANLTTILTSIVLYAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G V+GFAIT+ L + ISMFTAI+  R ++ +I   K+++ + I
Sbjct: 573 TGPVKGFAITLSLGVAISMFTAITGTRMLVNWIYGGKRVEKLSI 616



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 79/172 (45%), Gaps = 5/172 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP +  + + +G+   +     ++++  I +K  F   A   L +++   +G  +L  G 
Sbjct: 443 GPSLGAQNVEQGLKAGLWGLAIVIVFCLIYYKL-FGFIACLALCVNMILVVGLMSLLPGA 501

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              +  +A ++  +G SV+  V++++R+++ ++        +  ID+  N         +
Sbjct: 502 TLTMPGIAGIILSVGMSVDANVLIFERIKEEIR---NGRPIQQAIDEGYNGAWTSIFDAN 558

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   ++ + +   G   +  FAI ++ G+ ++  ++I     ++ +IY  + 
Sbjct: 559 LTTILTSIVLYAVGTGPVKGFAITLSLGVAISMFTAITGTRMLVNWIYGGKR 610



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   +  IG L ALPN   +    +                RG         
Sbjct: 4   RFPLWKNLMVIFMIAIGALYALPNIYGEDPAVQISGT------------RG--------- 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                +   +    ++++ L    +   S+      I   F ++  +    DK+   L
Sbjct: 43  -----HEANEDTLSDVQNLLAGNRLTTKSIVLENGTILARFNNTNDQLLAKDKIVEKL 95


>gi|59712574|ref|YP_205350.1| preprotein translocase subunit SecD [Vibrio fischeri ES114]
 gi|59480675|gb|AAW86462.1| SecYEG protein translocase auxillary subunit [Vibrio fischeri
           ES114]
          Length = 618

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 150/524 (28%), Positives = 275/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  ++  +    +  R+ L++  I
Sbjct: 104 NLAPLTPDWLTSIGAAPMKLGLDLRGGVHFLMEVDMDAAMSKLIGQQEESFRTDLREAKI 163

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   +          ++   +        D       +  + ++  
Sbjct: 164 RYRAIRDSGKDSVEVVLRNEEQLAEAKKVLSDAHR--------DMTFVESESNGQFKLIA 215

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ IIR R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 216 TFTEQRLQEIRNYAVEQNITIIRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 275

Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G     D +G   +++ ++ + G  +    ++
Sbjct: 276 LGATATLEFREVDDKADLAAAASGRAPAGSEIKEDRNGRPVVLKKRIILGGASITD-ASS 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    +R NIGK +A V                       
Sbjct: 335 SADEYGRPQVNISLDSEGGSKMTAFSRKNIGKLMATVFTEYKDSGRRTPEGRVILSKTEE 394

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 395 VINQATIQSALGRSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A + G+V +++F +V Y  +GLVA+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 455 MGIQACIWGMVAVMIFTLVYYRGFGLVANLALMANLVLIIGVMSMIPGATMTLPGIAGIV 514

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  ++   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 515 LTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 574

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 575 TGAIKGFAVTLSIGILTSMFTAIVGTRCVINLVYGGKRVDKLSI 618



 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 89/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G           +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 407 RSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 466

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++I+  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 467 VMIFTLVYYR-GFGLVANLALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 525

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      + +  I +            ++   I+ + +   G   I  FA
Sbjct: 526 LIFERIREELRD---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 582

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     ++  +Y  + 
Sbjct: 583 VTLSIGILTSMFTAIVGTRCVINLVYGGKR 612



 Score = 43.1 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 34/118 (28%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   +  I  L ALPN   +    +                  G+ +  +  
Sbjct: 4   RFPLWKYLMVVSVLLISALYALPNLYGEDPAVQITG-------------SRGTEV--QAS 48

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             D V   L+              I   S+      + + F D+  + +  D +   L
Sbjct: 49  TLDVVAENLKN-----------NDIAYKSIAFENGSVLVRFNDTDAQISARDIINESL 95


>gi|257455239|ref|ZP_05620474.1| preprotein translocase subunit SecF [Enhydrobacter aerosaccus SK60]
 gi|257447201|gb|EEV22209.1| preprotein translocase subunit SecF [Enhydrobacter aerosaccus SK60]
          Length = 416

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 157/307 (51%), Gaps = 5/307 (1%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                             I F++       +S + +I ++  + T GLN G+DF GG+  
Sbjct: 82  EFSAEDFGGEKFFAGRRIINFLKVSKPFAILSAILTILALVAILTKGLNLGLDFTGGVSA 141

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+  +PV  + V+S L S +I D   Q     K  LVRL  Q         +   +   
Sbjct: 142 TVVYEQPVQQAQVQSALSSHKINDSVVQYLGSNKEILVRLPPQ----KQIEGLSNSLDAA 197

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +      +TI+N ++VG ++  E+    +    ++ + M IY+ +RF+   ALGA+  L 
Sbjct: 198 LDLPNNNATIKNIDVVGSQVGNEIYISSLGATALALVCMFIYVMVRFQAKLALGAVLALF 257

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            D   T+G FALFG  F+LT +AAVL+LIGYS+ND +VV+DR+R+N +      S   ++
Sbjct: 258 HDSIITVGIFALFGWPFDLTVLAAVLSLIGYSINDTIVVFDRIRENFRR-VRGASPTQIV 316

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + S+ ETL R++ T     + V+ M + GG  +  F++ +  G+++   SS++IA+ I L
Sbjct: 317 NLSLTETLRRTIMTISTVLLVVVAMLLLGGESLHWFSVALLIGLILGTFSSVYIASAIPL 376

Query: 822 FIYDWRA 828
           ++   R 
Sbjct: 377 WLGMSRK 383


>gi|237749369|ref|ZP_04579849.1| preprotein translocase SecD subunit [Oxalobacter formigenes OXCC13]
 gi|229380731|gb|EEO30822.1| preprotein translocase SecD subunit [Oxalobacter formigenes OXCC13]
          Length = 623

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 159/511 (31%), Positives = 279/511 (54%), Gaps = 22/511 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N LP +   ++  ++    + LGLDLRGG H +++VD D  +N  +       R+
Sbjct: 108 YSIAFNLLPNTP--QWLQSLHALPMYLGLDLRGGVHFLMQVDVDAALNSRIAGMQTSARN 165

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+++ I    + ++++ I + F D++ ++         +  V  +              
Sbjct: 166 LLREKNIRYSGLIRVRDTIEMQFTDAQTRQQAEKIFKGQMSDVTLR-----------EDG 214

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             ++ + LS   + QV  ++++Q++  + +R++++G++E  IQ+ G+ RI++QLPG QD 
Sbjct: 215 GNKLILSLSPEAVKQVKENSVKQNIATLSKRVNELGVNEPVIQQQGADRIVVQLPGVQDV 274

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKK-----GFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           SR + ++G TA +    V  + ++          G    R   G   ++     I+G ++
Sbjct: 275 SRAKDIIGRTATLEVRMVDESVTRGTEESVAVPLGSELFRLGKGAPVVLYKDPVITGDYI 334

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQA 311
           + A+A+FD    +P V I  +  G R+  + TR  IGK +A+VL  +    +      + 
Sbjct: 335 SNASASFDQYQ-QPAVSIDLNGDGGRKMRQATRGKIGKLMAIVLFEKGKGEVLTVASIRD 393

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
               K QI+G  T E A  LA +LRAGSL   + I+EER +G  LG+++I KG  + + G
Sbjct: 394 ELGSKFQITGMNTPEAATDLALLLRAGSLAAPMQIIEERTIGPQLGAENITKGFLSTLYG 453

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
             ++ +FMI+ Y  +GL +  ++ +N++L +A+LSL+  TLTLP IA I L +G+A+DSN
Sbjct: 454 FAVVSIFMILYYMVFGLFSVIALSVNLLLLIAILSLMQITLTLPGIAAIALALGMAIDSN 513

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+NERIREE R + S   ++  GF+ A++TI DSN+T LIA + L  FG G +RGFA+ 
Sbjct: 514 VLINERIREELRMDHSPQTAISNGFAHAWATILDSNVTTLIAGLALLIFGSGPIRGFAVV 573

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             + IL S+F+A+ + R +       +K  +
Sbjct: 574 HVIGILTSLFSAVFVSRGIANLWYGRRKKLT 604



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 89/205 (43%), Gaps = 4/205 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G +  +      +  +   +     I     +GP++  E I KG +  +     + I++
Sbjct: 402 TGMNTPEAATDLALLLRAGSLAAPMQIIEERTIGPQLGAENITKGFLSTLYGFAVVSIFM 461

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + +   F L ++  L +++   +   +L  I   L  +AA+   +G +++  V++ +R+
Sbjct: 462 ILYY-MVFGLFSVIALSVNLLLLIAILSLMQITLTLPGIAAIALALGMAIDSNVLINERI 520

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ +++     S +  I           + +++   I+ L + ++G   I  FA+    G
Sbjct: 521 REELRM---DHSPQTAISNGFAHAWATILDSNVTTLIAGLALLIFGSGPIRGFAVVHVIG 577

Query: 805 IVVAASSSIFIAAPILLFIYDWRAK 829
           I+ +  S++F++  I    Y  R K
Sbjct: 578 ILTSLFSAVFVSRGIANLWYGRRKK 602



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44
          R   W  ++ ++    G++  LPNF  +S   +  S     +I
Sbjct: 3  RYPLWKYLVIAVAIVFGIIYTLPNFFGESPAVQISSVRSTVKI 45


>gi|51595281|ref|YP_069472.1| preprotein translocase subunit SecF [Yersinia pseudotuberculosis IP
           32953]
 gi|108808674|ref|YP_652590.1| preprotein translocase subunit SecF [Yersinia pestis Antiqua]
 gi|108811064|ref|YP_646831.1| preprotein translocase subunit SecF [Yersinia pestis Nepal516]
 gi|145600082|ref|YP_001164158.1| preprotein translocase subunit SecF [Yersinia pestis Pestoides F]
 gi|149364966|ref|ZP_01887001.1| protein-export membrane protein SecF [Yersinia pestis CA88-4125]
 gi|153948560|ref|YP_001402080.1| preprotein translocase subunit SecF [Yersinia pseudotuberculosis IP
           31758]
 gi|161484854|ref|NP_668324.2| preprotein translocase subunit SecF [Yersinia pestis KIM 10]
 gi|161511433|ref|NP_992131.2| preprotein translocase subunit SecF [Yersinia pestis biovar
           Microtus str. 91001]
 gi|162421217|ref|YP_001607724.1| preprotein translocase subunit SecF [Yersinia pestis Angola]
 gi|165926657|ref|ZP_02222489.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165935926|ref|ZP_02224496.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011128|ref|ZP_02232026.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166212914|ref|ZP_02238949.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167398817|ref|ZP_02304341.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421562|ref|ZP_02313315.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167423396|ref|ZP_02315149.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|170025478|ref|YP_001721983.1| preprotein translocase subunit SecF [Yersinia pseudotuberculosis
           YPIII]
 gi|186894298|ref|YP_001871410.1| preprotein translocase subunit SecF [Yersinia pseudotuberculosis
           PB1/+]
 gi|218930218|ref|YP_002348093.1| preprotein translocase subunit SecF [Yersinia pestis CO92]
 gi|229838793|ref|ZP_04458952.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229896053|ref|ZP_04511223.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           Pestoides A]
 gi|229899361|ref|ZP_04514504.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229901292|ref|ZP_04516414.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           Nepal516]
 gi|270489481|ref|ZP_06206555.1| protein-export membrane protein SecF [Yersinia pestis KIM D27]
 gi|294504916|ref|YP_003568978.1| protein export protein SecF [Yersinia pestis Z176003]
 gi|51588563|emb|CAH20171.1| preprotein translocase, IISP family, membrane subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774712|gb|ABG17231.1| protein translocase subunit secF [Yersinia pestis Nepal516]
 gi|108780587|gb|ABG14645.1| protein translocase subunit secF [Yersinia pestis Antiqua]
 gi|115348829|emb|CAL21783.1| protein-export membrane protein SecF [Yersinia pestis CO92]
 gi|145211778|gb|ABP41185.1| protein translocase subunit secF [Yersinia pestis Pestoides F]
 gi|149291379|gb|EDM41453.1| protein-export membrane protein SecF [Yersinia pestis CA88-4125]
 gi|152960055|gb|ABS47516.1| protein-export membrane protein SecF [Yersinia pseudotuberculosis
           IP 31758]
 gi|162354032|gb|ABX87980.1| protein-export membrane protein SecF [Yersinia pestis Angola]
 gi|165916071|gb|EDR34678.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165921585|gb|EDR38782.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990128|gb|EDR42429.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205701|gb|EDR50181.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960481|gb|EDR56502.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051321|gb|EDR62729.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167057566|gb|EDR67312.1| protein-export membrane protein SecF [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169752012|gb|ACA69530.1| protein-export membrane protein SecF [Yersinia pseudotuberculosis
           YPIII]
 gi|186697324|gb|ACC87953.1| protein-export membrane protein SecF [Yersinia pseudotuberculosis
           PB1/+]
 gi|229681221|gb|EEO77315.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           Nepal516]
 gi|229687763|gb|EEO79836.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695159|gb|EEO85206.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229700976|gb|EEO89005.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           Pestoides A]
 gi|262362981|gb|ACY59702.1| protein export protein SecF [Yersinia pestis D106004]
 gi|262366902|gb|ACY63459.1| protein export protein SecF [Yersinia pestis D182038]
 gi|270337985|gb|EFA48762.1| protein-export membrane protein SecF [Yersinia pestis KIM D27]
 gi|294355375|gb|ADE65716.1| protein export protein SecF [Yersinia pestis Z176003]
 gi|320016375|gb|ADV99946.1| SecYEG protein translocase auxillary subunit [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 322

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 168/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR  +   G+S+L  + SI ++ T G N+G+DF GG  + +    
Sbjct: 5   YTVEQLNYGRKVYDFMRWDYVAFGVSLLLLVASIVVMSTKGFNWGLDFTGGTVIEINLEN 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R  L++        QNF   ++ +VR+    G    Q    +++      +  
Sbjct: 65  PADLDQLRDTLQNAGFESPILQNFGSSRDVMVRMPPATGT-AGQELGNKIISVINESVDK 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            ++++  E VGP +  +L + G + ++++ +++L+Y+  RF+W  ALGA+ +L  D+  T
Sbjct: 124 NASVKRIEFVGPSVGSDLAQAGALALLVALLSILVYVGFRFEWRLALGAVISLAHDVVIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+ND +VV DR+R+N +       + ++++ S+ +
Sbjct: 184 MGILSLFHIEIDLTIIASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIMNVSLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++A+ + L +   R
Sbjct: 243 TLSRTIMTSATTLMVVLMLFIFGGAMLQGFSLTMLIGVTIGTVSSIYVASALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303


>gi|301063411|ref|ZP_07203947.1| export membrane protein SecF [delta proteobacterium NaphS2]
 gi|300442484|gb|EFK06713.1| export membrane protein SecF [delta proteobacterium NaphS2]
          Length = 351

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 98/348 (28%), Positives = 163/348 (46%), Gaps = 48/348 (13%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLL-FTHGLNYGIDFKGGIQLGVLANRPV 589
              I   + + F+  R     +S    + +I LL +  G NYG+DF GG+ + +   + V
Sbjct: 1   MQFIKPGVNVNFIGKRKIAFILSSFMILATIFLLVWRGGPNYGVDFSGGVLVQIKMAQKV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S ++  L+ + + D   Q F         ++ +  +    +    + K          
Sbjct: 61  SPSEIKKALKVVDLEDSIVQEFGEAGQLEYLIRIRKTEVELSSLGDRVEKALKAAFGDKV 120

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY------------------ 691
            I+  E+VGPK+ ++L +K +  +  S + + IYI  RF+                    
Sbjct: 121 EIRRVEMVGPKVGKDLRQKALFAIFYSILFIAIYISGRFELKWLMSIIMALCLAFVVYIT 180

Query: 692 ----------------------------FALGAITTLILDITKTLGFFALFGIEFNLTAV 723
                                       +ALGAI  +I D+T T+GFFAL   E +L+ +
Sbjct: 181 SGLGISVTWLILIALIVTLTLCLFLNLKYALGAIIAIIHDVTITVGFFALTEREISLSII 240

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA LT++GYS+ND ++V+DR+R+N++ +     F + +++SINETL R++ TS    I +
Sbjct: 241 AAFLTIVGYSLNDTIIVFDRIRENVRHFRRK-PFEETMNQSINETLSRTILTSGTTLIVI 299

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           L + V GG VI  FA  +  G+VV   SSIF+A+PIL+       K A
Sbjct: 300 LALFVLGGGVIHDFAFALLVGVVVGTYSSIFVASPILMIWEGRFGKKA 347


>gi|114046956|ref|YP_737506.1| preprotein translocase subunit SecF [Shewanella sp. MR-7]
 gi|113888398|gb|ABI42449.1| protein translocase subunit secF [Shewanella sp. MR-7]
          Length = 315

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 90/287 (31%), Positives = 165/287 (57%), Gaps = 3/287 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + F+R       +S +    S+  L T G+N+G+DF GG  + +   +PVDL+V+R+ 
Sbjct: 9   RTVNFLRHALPISIMSAILVFGSLVSLATKGINWGLDFTGGTVVEMEFTQPVDLNVLRTK 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L + ++     QNF   ++ LVRL  + G S      ++ V     ++      +  E V
Sbjct: 69  LSAPELDGAVVQNFGSSRDVLVRLSVKEGVSSDVQ--VKSVMAAAQQVDAGVQQKRVEFV 126

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++ +EL  +G + V+++ I ++IY+  RF+W  A G++  L  D+  TLG F++  +E
Sbjct: 127 GPQVGKELAEQGGLAVLVALICIMIYVSFRFEWRLAFGSVAALAHDVIVTLGVFSVLQLE 186

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +A VLT++GYS+ND +VV+DR+R+N      S    ++++ SI +T+ R++ T+ 
Sbjct: 187 FDLTVLAGVLTVVGYSLNDTIVVFDRIRENFLKMRKSEP-EEVVNVSITQTMSRTIITTG 245

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
              ++V+ + + GG++I  FA  +  GI V   SSI++A+ + + + 
Sbjct: 246 TTLVTVVALFLKGGTMIHGFATALLLGIFVGTYSSIYVASYLAIKLG 292


>gi|319941717|ref|ZP_08016039.1| translocase subunit secF [Sutterella wadsworthensis 3_1_45B]
 gi|319804650|gb|EFW01517.1| translocase subunit secF [Sutterella wadsworthensis 3_1_45B]
          Length = 310

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/302 (27%), Positives = 149/302 (49%), Gaps = 4/302 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM  R     IS +  I ++  +FTHGL   I+F GG QL V      +
Sbjct: 1   MEFFRIHRTIPFMHYRHVLNAISFVSFIVAVYWIFTHGLALSIEFTGGTQLEVKYPSAAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              +R +L  +    +            V ++    +     +V   V K +    P   
Sbjct: 61  TEQIREDLGQVSKEVLVQTFGTASD---VVIRVPTKEGQTSGQVAAEVMKVLQAKTPDVQ 117

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +++TE VGP++  EL R G   + +  + ++IY+  RF+W F++ AI   + DI   +G 
Sbjct: 118 LKSTEFVGPQVGDELARDGGTALALVVVGIMIYLAFRFEWKFSVAAIIANLHDIVIVVGI 177

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F++   EF L  +AAVL ++GYSVN+ V+++DR+R++ +    + S  ++++ +I  T+ 
Sbjct: 178 FSVMHWEFTLPVLAAVLAVLGYSVNESVIIFDRVREHFRTMRRADSM-EIVNSAITATIS 236

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R+V T  +     L M  +GG  +  F++ +  GI++   SS+F+AA I L++   R   
Sbjct: 237 RTVITHTSTLCMTLSMFFFGGPALHYFSLALTIGILLGVYSSVFVAAAIALYLGVKREDL 296

Query: 831 AR 832
            +
Sbjct: 297 VK 298


>gi|197118809|ref|YP_002139236.1| preprotein translocase subunit SecF [Geobacter bemidjiensis Bem]
 gi|197088169|gb|ACH39440.1| protein export membrane protein SecF [Geobacter bemidjiensis Bem]
          Length = 301

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 90/296 (30%), Positives = 146/296 (49%), Gaps = 9/296 (3%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSI---CLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               I FM  R     IS + +I  I     +     N GIDF GGI + V  N+PV   
Sbjct: 5   RNTNIDFMGLRKISFIISGIVAIVGILGVIAIGRGTANMGIDFSGGIAMQVKFNQPVTTQ 64

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            VR  L    I ++  Q   G    LV++      +      L+             T++
Sbjct: 65  GVRDALSKGGIHEVELQEITGGNQILVKMHKSEKSAQNVEDALKQNLA-----GNAFTVE 119

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           ++  +GP I  +L +  ++ V +S + +++YI  RF + F +GA+   + D+   +  F 
Sbjct: 120 SSTEIGPSIGEKLKKDTLIAVALSMLGIILYIAWRFDFKFGVGAVVATMHDVLAMIAVFY 179

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           +   E N+  + AVLT+ GYS+ D VVV+DR+R+NM           + ++SINETL R+
Sbjct: 180 VLHKEVNILLITAVLTIAGYSLTDTVVVFDRIRENMHKSLK-DPMFVIFNRSINETLSRT 238

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + TS+  F+S + + ++GG VI  FA  +  G++VA  SSIF+A+PI+        
Sbjct: 239 IITSVTTFLSAVSLYLFGGEVINDFAFALVIGVLVATYSSIFVASPIVALWEKSSE 294


>gi|254463097|ref|ZP_05076513.1| protein-export membrane protein SecF [Rhodobacterales bacterium
           HTCC2083]
 gi|206679686|gb|EDZ44173.1| protein-export membrane protein SecF [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 298

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 102/283 (36%), Positives = 164/283 (57%), Gaps = 7/283 (2%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD------ISFQ 609
             +         GLNYGIDFKGG  +   +  P+D+   R  +  L++GD          
Sbjct: 3   LMVVGFASFLYQGLNYGIDFKGGTTIRTESTTPIDVGAYRDAIAPLELGDISISEVFDPT 62

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
               +   +VR++ Q G    ++ ++  V+  +  I       + E VGPK+S ELI+  
Sbjct: 63  FEADQNVAMVRIEAQEGQEAVKSDIIAEVQTALQVIAADIKFVSVESVGPKVSGELIQTA 122

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + VI++  A+LIYIW+RF+W FALGA+  L+ D+  T+G F+   I+F+L  +AA+LT+
Sbjct: 123 AIAVILAIAAVLIYIWLRFEWQFALGAVAALVHDVILTIGIFSELQIKFDLAIIAALLTI 182

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +GYS+ND VVV+DR+R+N++ Y      +D+++ SINETL R+  TS+   ++++ + V 
Sbjct: 183 VGYSLNDTVVVFDRVRENLRKYKKK-DLKDVLNISINETLSRTFMTSVTTLLALIALFVL 241

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           GG VI  F   M +G++V   SSIF+A+ ILLF+   R    +
Sbjct: 242 GGDVIRGFVFAMIWGVIVGTYSSIFVASAILLFLGVKRDWTNK 284


>gi|327481771|gb|AEA85081.1| preprotein translocase subunit SecD [Pseudomonas stutzeri DSM 4166]
          Length = 622

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 150/526 (28%), Positives = 266/526 (50%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD +  +   L +   E++S L+KE +
Sbjct: 107 NLAPTTPDWLRSLGASPMKLGLDLSGGVHFLLEVDMEKAIETRLNVSEGEVKSLLRKERV 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+  +++ + L FAD          +             D +        +  + + 
Sbjct: 167 RYRSLPNLKDAVQLGFADQETLSAAQSLIRKNF--------TDFELTTSERNGQFVLRLT 218

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L++  + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 219 LTEAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 278

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F     ++            R+       +E  + I+G  +  A A++D    
Sbjct: 279 GKTANLEFRLAAESD-APRASTETFEFREEGRPPVQLERTLIITGDQVTDAQASYDENG- 336

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA--------------- 311
           +P V+I  D  G       TR N+G+ +AV+   +      + Q                
Sbjct: 337 RPQVNIRLDGHGGDLMNRATRSNVGRSMAVIFIEQRPLTRYVRQMVDGVEQEVRVETFQE 396

Query: 312 ------------IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                           + +I+G      +  LA +LRAG L   +   EER +G  LG++
Sbjct: 397 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAE 456

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I  G  A + G + + +FM+++Y  +G++A  ++  N++   AL+S+L ATLTLP IAG
Sbjct: 457 NIKLGVQAAMWGFLFVAIFMVLIYKFFGVLATIALLFNMVALTALMSMLNATLTLPGIAG 516

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     S+  ++  GF RA+S I D N+T L+   +LF 
Sbjct: 517 IVLTMGMAVDANVLIFSRIREEIANGMSIQRAIHEGFDRAFSAILDGNLTTLLVGGILFA 576

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G ++GFA+T+ + IL SMFTAI + R M+  I   + +K + I
Sbjct: 577 MGTGPIKGFAVTLSIGILTSMFTAIIVTRGMVNLIYGGRDLKKLWI 622



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 82/204 (40%), Gaps = 4/204 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +         +  +   +           +GP +  E I+ G+   +   + + I++ + 
Sbjct: 420 NGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAENIKLGVQAAMWGFLFVAIFMVLI 479

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +K+ F + A   L+ ++       ++      L  +A ++  +G +V+  V+++ R+R+ 
Sbjct: 480 YKF-FGVLATIALLFNMVALTALMSMLNATLTLPGIAGIVLTMGMAVDANVLIFSRIREE 538

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +      +S +  I +  +      +  ++   +    +   G   I  FA+ ++ GI+ 
Sbjct: 539 IA---NGMSIQRAIHEGFDRAFSAILDGNLTTLLVGGILFAMGTGPIKGFAVTLSIGILT 595

Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831
           +  ++I +   ++  IY  R    
Sbjct: 596 SMFTAIIVTRGMVNLIYGGRDLKK 619


>gi|304398341|ref|ZP_07380215.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. aB]
 gi|304354207|gb|EFM18580.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. aB]
          Length = 1038

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 187/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  +        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLCGTLSII-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q +ITL+F      +    +V  
Sbjct: 50  PGASAETLENTVTQVIEQNMTGIDNLMYMSSNSSNTGQAQITLTFTAGTNPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I++             + S  +     D +   
Sbjct: 110 QLQSALRKLPQAVQSQGVTVNKTGDSNILMVAFVSTDGSMDKQDISDYVASNIQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   Q          +    DP++L     TT  +       N        G     +  
Sbjct: 170 DGVGQVDAYGSQ-YAMRIWLDPNKLIAYALTTDDVVNAIQSQNTQVAVGQVGGLPSVEKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 ALNATVNAQSML-------------QTPEQFRAITLKNNPDGSVVTLGDVATVALGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRYNGQPASGLGVKLASGANEMNTDKLVRARIEELSHYFPHGLEAKIAYETSPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV  V+++ +   +  L+   ++ + +  T ++L   G ++   ++
Sbjct: 336 SITDVVKTLLEAIVLVFGVMYLFMQNFRATLIPTIAVPVVLFGTFSVLYAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMHEEGLSPRAATRKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTVGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPAAQGEVHERRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +           +A        W +    +  + +   L        ++ +G     V
Sbjct: 516 NRHFNRNADRYERGVAGILRTGGRWLLVYVAIIGLMAFLFLRLPTSFLPLEDRGVFLTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L    S +  ++   ++ +  +    F        G+     R+   +K    
Sbjct: 576 QLPAGATLEQTASVVAKVENYYLTKEKANVLSVFSTIGAGPGGNGQNVARLFVRLKDWEA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K  +++    ++ 
Sbjct: 636 RPGADRTSFAIIDRATKAFQKIKEGRVIA 664



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +   +++    ++++   P 
Sbjct: 260 VTLGDVATVALGAEKYDYLSRYNGQPASGLGVKLASGANEMNTDKLVRARIEELSHYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + +   +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETSPFVKASITDVVKTLLEAIVLVFGVMYLFMQNFRATLIPTIAVPVVLFGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     ++   +S R    KS+ +
Sbjct: 380 FSVLYAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMHEEGLSPRAATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +G   G++   F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTVGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 68/185 (36%), Gaps = 8/185 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS + + + +   ++ W      +  + L +   L  
Sbjct: 854  GFQWTGASYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVVGALIA 913

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+E ++     +LT++G S  + +++ +   +   + +      +   ++  + L 
Sbjct: 914  TWLRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---INSKGRELVESTLEASRQRLR 970

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +    
Sbjct: 971  PILMTSLAFIFGVLPMAISSGAGSGSQHAVGTGVMGGMISATLLAIFFVPLFFVLVRRRF 1030

Query: 828  AKNAR 832
                +
Sbjct: 1031 PLKEK 1035


>gi|120554045|ref|YP_958396.1| preprotein translocase subunit SecF [Marinobacter aquaeolei VT8]
 gi|120323894|gb|ABM18209.1| protein translocase subunit secF [Marinobacter aquaeolei VT8]
          Length = 316

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 152/289 (52%), Gaps = 6/289 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM  R     +SI+  + SI LL   GLN G+DF GG  + +       L  +R+ L 
Sbjct: 9   FDFMGLRKIASVLSIVLVVVSIALLGVRGLNLGMDFTGGTSVELEYAEAPSLDGIRNTLT 68

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                  + QNF  +   L+R+            +   V   +        + ++E VG 
Sbjct: 69  EAGYEQFAVQNFGADTTVLIRMA-----EAGNDELALEVAGVLAADGADLELVSSEFVGS 123

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  EL     +G++I+   +LIY+ +RF++ F + ++  L  D+   LG FALF   F+
Sbjct: 124 QVGEELKEDSGLGLLIALAVVLIYVGMRFQFKFGIASVIPLAHDVIIVLGVFALFQWTFD 183

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AA+L +IGYS+ND +VV DR+R+N +      ++ D+I++SI+ET+ R++ TS   
Sbjct: 184 LTVLAALLAVIGYSLNDTIVVADRIRENFRKMRVGEAW-DIINQSIHETITRTINTSGTT 242

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +L +   GG  I +FA+ +  G+VV   SSI+++A +L+ +   R 
Sbjct: 243 LVVLLALYFLGGEAINNFALALIIGVVVGTYSSIYVSANMLMVMGVTRE 291


>gi|312795158|ref|YP_004028080.1| protein translocase subunit secF [Burkholderia rhizoxinica HKI 454]
 gi|312166933|emb|CBW73936.1| Protein translocase subunit secF [Burkholderia rhizoxinica HKI 454]
          Length = 316

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 158/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       IS++  + ++  L   GL+  ++F GG  L +   +   
Sbjct: 1   MEFFRIRKDIPFMQRALIFNVISLVTFLLAVFFLLHRGLHLSVEFTGGTVLEIHTPQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R  L+ +   D   Q F   ++ L+RL  + G S AQ    + V   + E+     
Sbjct: 61  VDPIRGALDKIGYADAQVQTFGTSRDVLIRLPLKGGLSSAQQS--DQVMAALNELDAQIK 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ +EL   G++ +    + ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 119 LQRVEFVGPQVGKELATDGLLALACVVVGIVIYLSFRFEWKYAIAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVTEVINHAITSTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M ++GG  +  FA+ +  GI+    SS+F+AA + +++   R   
Sbjct: 238 RTIITHGSTQMMVLSMLLFGGLTLHYFALALTIGILFGIYSSVFVAAALAMWLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|261340776|ref|ZP_05968634.1| inner membrane multidrug efflux protein BpeB [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317200|gb|EFC56138.1| inner membrane multidrug efflux protein BpeB [Enterobacter
           cancerogenus ATCC 35316]
          Length = 1037

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G+L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGVLAI-----TSLPVEQYPELAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLSFTAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSALRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L  +  T   ++      N        G     D+ 
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPNKLTSVQMTAKDVTDAIESQNAQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELSHFFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRQATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCCTLLKPLHKGEQHGQKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W V   +L        L        ++ +G     V
Sbjct: 516 NRMFNRNAARYETGVGKVLHRSVRWMVVYVLLLGGMVFLFLRLPTSFLPLEDRGMFITSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++ ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVQKVENYFHTQEKDNVVSIFSTVGSGPGGNGQNVARMFIRLKDWEQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K    +    +  
Sbjct: 636 RDSKTGSSFAIIERATKAFSHIKEARVFA 664



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     +++   P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELSHFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    +S R    KS+ +
Sbjct: 380 FAVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRQATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCCTLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 82/268 (30%), Gaps = 13/268 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 D      +   A   V  S   ++        +   N       +          
Sbjct: 777  YRMLPDDINRWYVRNNAGGMVPFSAFATSRWETGSPRLERYNGYSALEIVGEAAPGVSTG 836

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + ++V++         T  + +              +  +  S + + + +   +
Sbjct: 837  TAMDVMEKLVQQLPAGFGLEWTAMSYQERLSGAQAP----ALYAL--SLLVVFLCLAALY 890

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +  + L +   L    + G+E ++     +LT+IG S  + +++ +   + 
Sbjct: 891  ESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE- 949

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFG 804
              +             +  + L   + TS+A    VLPMA   G+      +    +  G
Sbjct: 950  --MNAKGHDLMAATLHACRQRLRPILMTSLAFVFGVLPMATSSGAGSSSQHAVGTGVMGG 1007

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++ A   +I+      + +        R
Sbjct: 1008 MISATILAIYFVPLFFVLVRRRFPLKER 1035


>gi|163749708|ref|ZP_02156954.1| protein export protein SecD [Shewanella benthica KT99]
 gi|161330521|gb|EDQ01479.1| protein export protein SecD [Shewanella benthica KT99]
          Length = 610

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 166/536 (30%), Positives = 277/536 (51%), Gaps = 37/536 (6%)

Query: 18  GLLIALPNFLPQ--SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  AL +      ++    P  +     + + LGLDLRGG + ++EV  D+ V    + 
Sbjct: 84  AIAAALGDKYTVALNLAPATPKWLEAMGGSPMKLGLDLRGGVYFLMEVKMDEAVRKMTES 143

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
              + R+ L+ E I    +R+    I + F D+         +             D   
Sbjct: 144 KMADFRTDLRGERIRYAGIRESAKGIEIKFRDAENLAKAERFLKSRDN--------DMVF 195

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
               +     +   LS N + Q+   A++Q++  IR R++++G++E  +QR G+ RI++Q
Sbjct: 196 TDTSSGGNYFLIANLSDNYLKQIKEDALQQNITTIRNRVNELGVAEPVVQRQGAERIIVQ 255

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKV 247
           LPG QD +R +++LG TA + F  V           G      +      G +  +  +V
Sbjct: 256 LPGVQDTARAKKILGATASIEFRMVDEKADAAAIASGRVSPNSQVYDRRQGGKVALYKEV 315

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP- 306
            +SGIH+ GA  +FD  + +P V I+ D  G   F  VT+DNIGKP+A +          
Sbjct: 316 MLSGIHIQGAQPSFDEYS-RPQVSINLDSKGGSIFSNVTKDNIGKPMATLFIEYKDNGAK 374

Query: 307 ----------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                           V       G+  +        +  LA +LRAG+L   + IVEER
Sbjct: 375 NPDGSIKLEKIEEVISVATIQARLGRNFVITGLDHSESQNLALLLRAGALIAPVVIVEER 434

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG- 409
            +G  LG+++I  G  A++ GL ++++FM+V Y  +GL+A+ ++  N+++ + ++S++  
Sbjct: 435 TIGPSLGAENIQNGVQAMIWGLAVVLIFMLVYYRAFGLIANLALTANLVMVVGVMSMIPG 494

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           A LTLP IAG+VL +G+AVD N+L+ ERIREE R  +SV  ++  G++ A+STI D+NIT
Sbjct: 495 AVLTLPGIAGMVLTVGMAVDGNVLIYERIREELRNGRSVQQAIHDGYANAFSTIADANIT 554

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             +  ++LF  G GAV+GFA+T+ + I  SMFTAI   RA++  +   K++K + I
Sbjct: 555 TFMTALILFSVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKRVKKLSI 610



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 89/234 (38%), Gaps = 6/234 (2%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            S+++  I            +   +              +  +   ++    I     +G
Sbjct: 378 GSIKLEKIEEVISVATIQARLGRNFVITGLDHSESQNLALLLRAGALIAPVVIVEERTIG 437

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIE 717
           P +  E I+ G+  +I     +LI++ + ++  F L A   L  ++   +G  ++  G  
Sbjct: 438 PSLGAENIQNGVQAMIWGLAVVLIFMLVYYR-AFGLIANLALTANLVMVVGVMSMIPGAV 496

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ ++      S +  I              ++
Sbjct: 497 LTLPGIAGMVLTVGMAVDGNVLIYERIREELR---NGRSVQQAIHDGYANAFSTIADANI 553

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKN 830
             F++ L +   G   +  FA+ +  GI  +  ++I     I+       R K 
Sbjct: 554 TTFMTALILFSVGTGAVKGFAVTLMIGIATSMFTAIVGTRAIVNAVWGGKRVKK 607


>gi|312962923|ref|ZP_07777410.1| preprotein translocase SecD subunit [Pseudomonas fluorescens WH6]
 gi|311282950|gb|EFQ61544.1| preprotein translocase SecD subunit [Pseudomonas fluorescens WH6]
          Length = 622

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 161/526 (30%), Positives = 268/526 (50%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDL GG H +LEVD D  ++  L++Y  +++S L+KE +
Sbjct: 107 NLAQTTPQWLRSIGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKL 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q+   I L F D   +E     +          +  D     ++        + 
Sbjct: 167 RYRSLPQLNGAIQLGFTDEASREQARALIRKNFND-FDIVPADLNGQAVLR-------LA 218

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S   I ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 219 MSPAKIAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRIL 278

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F                   R+ +    L+E  + I+G  +  A A F     
Sbjct: 279 GKTANLEFRLAAEP-GASRATSEEFEFREGNRPPALIERGLIITGDQVTDAKAGFGEHGT 337

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299
            P V+I  D  G       TR N+G+ +                               +
Sbjct: 338 -PEVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQRPVTTYTKQMVNGVEKDVPVQTFKE 396

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            + + +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 397 EKKIISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 456

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+I +   +G++A  ++  N+++ LAL+SLLGATLTLP IAG
Sbjct: 457 NITKGVDAALWGMLFVSLFIIAISRFFGVIATVALAGNMVMLLALMSLLGATLTLPGIAG 516

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     +V  +++ GF RA++ I DSN+T L+   +LF 
Sbjct: 517 IVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFA 576

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 577 MGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 622



 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 93/250 (37%), Gaps = 5/250 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       ++ V  ++      +             +  Q++      Q    E+     
Sbjct: 374 VTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGLNGQGESSELALLLR 433

Query: 643 TEIVPLSTIQNTE-IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +        E  +GP +  + I KG+   +   + + ++I    ++ F + A   L 
Sbjct: 434 AGGLAAPMYFAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAISRF-FGVIATVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 493 GNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMTVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++         + +++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 550 NEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 609

Query: 822 FIYDWRAKNA 831
            I+  R    
Sbjct: 610 LIFGGRDFKK 619



 Score = 42.8 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  IG + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLAIGFIYSAPNLYPDDPAIQISGASTSLQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            +                      +   ++        L       +    D V   +
Sbjct: 51  LERASKALNDA----------GIQVKAATLAAGSKGGLLRLTKQEDQLPAKDVVRKAM 98


>gi|187778357|ref|ZP_02994830.1| hypothetical protein CLOSPO_01949 [Clostridium sporogenes ATCC
           15579]
 gi|187771982|gb|EDU35784.1| hypothetical protein CLOSPO_01949 [Clostridium sporogenes ATCC
           15579]
          Length = 287

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 81/287 (28%), Positives = 147/287 (51%), Gaps = 8/287 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS++  +  +  L   GLNYGIDFKGG  + +   +      V   ++     
Sbjct: 7   KTKIWFSISLIIILTGMFFLMKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ +      N  + ++          ++   VK K         + + + +GP + +E
Sbjct: 67  SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L RK ++ +II+ IAMLIY+ IRF++ F L AI  L+ DI  T+  +A+F +  + + +A
Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFKFGLAAILGLVHDILITISVYAIFKLPVSSSFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +V++DR+R+N K         ++ + SI +T+ RS+ T +    +++
Sbjct: 181 AILTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANISITQTMSRSINTVLTTLFTIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + V+    I  FA P+  GI+    SSIFI++P+ +     +  N 
Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKSKLANK 285


>gi|77462343|ref|YP_351847.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides 2.4.1]
 gi|332560226|ref|ZP_08414548.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides WS8N]
 gi|6647841|sp|O33568|SECF_RHOS4 RecName: Full=Protein-export membrane protein secF
 gi|2228684|gb|AAB61904.1| protein-export membrane protein [Rhodobacter sphaeroides]
 gi|77386761|gb|ABA77946.1| protein translocase subunit secF [Rhodobacter sphaeroides 2.4.1]
 gi|332277938|gb|EGJ23253.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides WS8N]
          Length = 324

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 177/312 (56%), Gaps = 7/312 (2%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              R  L P+   I F  A     G S+     S+    T GLN+GIDF+GG  +   + 
Sbjct: 1   MAFRLKLCPEKTNIDFFWAAPVTFGFSVFLMAASLVAWLTLGLNFGIDFRGGTTIRTEST 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKK 640
           + VD++  R+ LE   +GDIS                +VR+  Q          +  V++
Sbjct: 61  QAVDVAAYRAALEGQDLGDISITEVFDPGFRADQHVAMVRIGAQDATQSITPEQIGQVEE 120

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +  + P  T  + E VGPK+S ELIR  I+ V  +   + +YIW+RF+W FALG++  L
Sbjct: 121 ALKTVDPSITFPSVESVGPKVSGELIRSAILAVAAACAGIAVYIWLRFEWQFALGSVAAL 180

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           I D+  T+G FALF I+F+LT VAA+LT++GYS+ND VVV+DR+R+N+  Y  ++  RD+
Sbjct: 181 IHDVLVTIGVFALFQIKFDLTTVAALLTVLGYSINDTVVVFDRLRENLVKY-KTMPLRDV 239

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ S+NETL R++ T M   I+++ + V+GG VI  F   + FG+V+   SS+++A  I+
Sbjct: 240 MNLSVNETLSRTIMTLMTTLIALVSLLVFGGDVIRGFVFAITFGVVIGTYSSVYMAKNIV 299

Query: 821 LFIYDWRAKNAR 832
           L++   R    +
Sbjct: 300 LYLGVDRGGPKK 311


>gi|304413739|ref|ZP_07395183.1| preprotein translocase subunit SecD [Candidatus Regiella
           insecticola LSR1]
 gi|304283830|gb|EFL92224.1| preprotein translocase subunit SecD [Candidatus Regiella
           insecticola LSR1]
          Length = 617

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 160/542 (29%), Positives = 289/542 (53%), Gaps = 41/542 (7%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             M    G  +   N  P +    + +A+  + + LGLDLRGG H ++EVD D  ++   
Sbjct: 90  VLMTALGGKYVIALNLAPATP--AWLAALGADPMKLGLDLRGGVHFLMEVDMDTALSKLQ 147

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSKLN 127
           +   D LR+ L+++ I   S  +       + + FAD + ++     ++   +       
Sbjct: 148 EHNIDSLRADLRQKNIPYLSAAKQDQTNYAVFIRFADDKLRDTAISYLSSRHR------- 200

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 ++ T    ++  ++S   + +   +A++Q++ I+R R++Q+G++E  +Q+ G+ 
Sbjct: 201 ----DLVINTDGNNQLKALISDERLREARGYALQQNITILRNRVNQLGVAEPLVQKQGAD 256

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYL 242
           RI+++LPG QD +R +++LG TA + F     N        G           S+G   +
Sbjct: 257 RIVVELPGIQDTARAKEILGATASLEFRLQNTNIDPSAAAAGRVPGDSEVKLTSEGRPVV 316

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  +V ++G H+  +T++ D    +  V+IS D  G       T+DNIGKP+A +     
Sbjct: 317 LYKRVILTGDHITDSTSSTDEYN-QAQVNISLDSAGGSIMSNFTKDNIGKPMATLFVEYK 375

Query: 303 LTAP------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
            +                       Q+      +I+G      A  L+ +LRAG+L   +
Sbjct: 376 DSGKKDINGKTIFVKQEEVINVATIQSRLGNNFRITGIANPVEARQLSLLLRAGALIAPI 435

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
            IVEER +G  LG+ +I +G  A + GL+  ++FM++ Y K+GL+A  ++ +N++L + +
Sbjct: 436 QIVEERTIGPTLGAQNITQGLAACLWGLIASIIFMVIYYRKFGLIASSALLVNLVLIVGI 495

Query: 405 LSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
           +SLL  ATLT+P IAGIVL + +AVD+N+L+NERI+EE R  +S+  ++  G+  A+S+I
Sbjct: 496 MSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELRNGRSIQQAIHQGYQGAFSSI 555

Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            D+N+T LI  ++L+  G G+++GFAIT  + ++ SMFTAI   RA++  +   K++  +
Sbjct: 556 VDANVTTLITAIILYAIGTGSIKGFAITTVIGVITSMFTAIVGTRAIVNLLYGGKRINKL 615

Query: 524 DI 525
            I
Sbjct: 616 SI 617



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/177 (18%), Positives = 81/177 (45%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   IA +I++ I ++  F L A + L++++   +G  +L  
Sbjct: 442 TIGPTLGAQNITQGLAACLWGLIASIIFMVIYYR-KFGLIASSALLVNLVLIVGIMSLLP 500

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +         V 
Sbjct: 501 GATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSIQQAIHQGYQGAFSSIVD 557

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   I+ + +   G   I  FAI    G++ +  ++I     I+  +Y  +  N 
Sbjct: 558 ANVTTLITAIILYAIGTGSIKGFAITTVIGVITSMFTAIVGTRAIVNLLYGGKRINK 614



 Score = 38.9 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 14/37 (37%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA 38
          R   W  ++      IGLL ALPN   +    +    
Sbjct: 4  RYPLWKYLMLIFFILIGLLYALPNLYGEDPAVQITGV 40


>gi|218961313|ref|YP_001741088.1| protein-export membrane protein secD, accessory membrane protein
           [Candidatus Cloacamonas acidaminovorans]
 gi|167729970|emb|CAO80882.1| protein-export membrane protein secD, accessory membrane protein
           [Candidatus Cloacamonas acidaminovorans]
          Length = 528

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 162/536 (30%), Positives = 263/536 (49%), Gaps = 21/536 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   W  +   +  C+      P      ++   PS   K+ + LGLDLRGG  ++LEV
Sbjct: 1   MKKFSWRGLFIIIFFCVTAFFLAP-----MVIPNLPSWWSKHHLKLGLDLRGGMQILLEV 55

Query: 61  DEDDFVNGFLQMYSD----ELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKV 115
           D  +      +   +     +R  + + G+   S+++  +N+I +        +   + +
Sbjct: 56  DTSELSAADARNAVEQNIKIIRERIDQFGVAEPSIQKLGENRIMVQLPGVSDYKAAENLI 115

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                     +    +   ++  T                     ++S+       D + 
Sbjct: 116 KQTAMLEFKLVAPQDEAKRVIE-TIDRNISSNLDKFPVLAEMAKKDKSIMADTTSTDSLK 174

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             E     L     +       D   ++ LL   A   F +++P   +            
Sbjct: 175 TGEGIFSSLIRPGEMDFEVQYSDVRLIQDLL---ADTLFAQMVPMGYQLALDKADTENPR 231

Query: 236 SDGNQYLVEDKVEISGIHLNGATANF-------DPKTHKPVVDISFDEMGARRFFEVTRD 288
           +D N Y++    +++G  L  A   +           +KP + I     GAR+F  VT D
Sbjct: 232 ADRNLYVLSSAAQLTGGDLAKAKVEYGSATSTDPRIANKPYISIEMKREGARKFERVTAD 291

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           N+GK LA+VLDG V +AP I + I  G+AQI+G FT   A  LA +L  G+L   +  V 
Sbjct: 292 NVGKRLAIVLDGVVYSAPNIQERIAGGRAQITGRFTATEANELAIVLNTGNLIAPIKPVS 351

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
              +GA LG+DSI KGT A + GL+++VLFMI+ Y   G +AD ++ LNV   LA+L+  
Sbjct: 352 TSIIGATLGADSIRKGTMAGLIGLIIVVLFMIIYYKLCGFIADIALVLNVGFILAMLTAF 411

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GATLTLP IAGI+L IG+AVD+N+L+ ERIREE    ++   +++ GF RA  T++DSN+
Sbjct: 412 GATLTLPGIAGIILTIGMAVDANVLIFERIREELDLGKTPRSAVEAGFKRALVTVWDSNL 471

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           T +IA ++L++ G G +RGFA+T+ + I+ SMFTAI +VR+++  I+   K   + 
Sbjct: 472 TTVIAGIILYYLGTGPIRGFAVTLVIGIMGSMFTAIVVVRSILDNIVLTGKRTKLS 527



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 41/203 (20%), Positives = 89/203 (43%), Gaps = 6/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A       +      ++      +T I+G  +  + IRKG +  +I  I +++++ I +
Sbjct: 327 TATEANELAIVLNTGNLIAPIKPVSTSIIGATLGADSIRKGTMAGLIGLIIVVLFMIIYY 386

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           K      A   L+L++   L     FG    L  +A ++  IG +V+  V++++R+R+ +
Sbjct: 387 KLC-GFIADIALVLNVGFILAMLTAFGATLTLPGIAGIILTIGMAVDANVLIFERIREEL 445

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            L     + R  ++      L     +++   I+ + +   G   I  FA+ +  GI+ +
Sbjct: 446 DL---GKTPRSAVEAGFKRALVTVWDSNLTTVIAGIILYYLGTGPIRGFAVTLVIGIMGS 502

Query: 809 ASSSIFIAAPIL--LFIYDWRAK 829
             ++I +   IL  + +   R K
Sbjct: 503 MFTAIVVVRSILDNIVLTGKRTK 525


>gi|307293128|ref|ZP_07572974.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobium chlorophenolicum L-1]
 gi|306881194|gb|EFN12410.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobium chlorophenolicum L-1]
          Length = 1057

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/575 (13%), Positives = 154/575 (26%), Gaps = 41/575 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L    + +FP   P               + +    
Sbjct: 8   RPIFAWVIAIVIMLAGVLA-----LRSLAVAQFPEIAPPA-------------VTVTTSY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+  +   +   LK           S       ITL+F      +    +V  
Sbjct: 50  PGANAQTLESTTTQIIEQQLKGIDRLRYFSSSSDSAGNLTITLTFEQGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  L  T      +++     +  I   ++    +     D I   
Sbjct: 110 KLAQATPLLPQEVQQQGLRVTKSSSTFLMVMAVYSEDGIHDQLDAGDFVASTLQDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP ++  L  TT  +       N        G        
Sbjct: 170 DGVGDTQLFGSQ-YAMRIWLDPYKMANLGITTGDVKSAIRAQNAQVSAGQIGAAPSPKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       D       +      +       
Sbjct: 229 ALNATVTAQSRL-------------KTPEEFRQIRLRDNGDGSVVYLSDVARVEMGADTY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T+E      A L               N      
Sbjct: 276 SFAARFNGHPAAGFAIKLAPGANALDTVEGVKSRVAELSKSFPSWVKYDFPVDNSTFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++ +LA+L   G T+   ++
Sbjct: 336 SVEQVISTLFEAILLVFVVMFIFLQNWRATLIPTIAVPVVLLGSLAVLYAAGFTINTLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERIIQEEGLSPREAAKKSMDEISGALIGIGLVLSAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+   I++ +    I        F 
Sbjct: 456 MAFFGGSTGVIFRQFSITIVSAMVLSVLVALILTPALCATILQPRGQSHIWTGFFGSRFG 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                  +         G S+              
Sbjct: 516 RFFDWFNRTFDRSVVRYGKSVEKVERRWGRTMLVY 550



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 86/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V            + +                 +++     ++    ++++  P 
Sbjct: 260 VYLSDVARVEMGADTYSFAARFNGHPAAGFAIKLAPGANALDTVEGVKSRVAELSKSFPS 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +  +      +  + + I  +  + + + + ++I  + W   L     + + +  +
Sbjct: 320 WVKYDFPVDNSTFVKLSVEQVISTLFEAILLVFVVMFIFLQNWRATLIPTIAVPVVLLGS 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L      G   N   +  ++  IG  V+D +VV + +     +    +S R+   KS++E
Sbjct: 380 LAVLYAAGFTINTLTLFGMVLAIGLLVDDAIVVVENV--ERIIQEEGLSPREAAKKSMDE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +   +      LPMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 438 ISGALIGIGLVLSAVFLPMAFFGGSTGVIFRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 61/204 (29%), Gaps = 6/204 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  +  V   +          G    + F+G  +  +     PG S  +           
Sbjct: 795 VRGSGGVMAPISSFATTEWIHGPAKLERFNGVPSMQIMGAPAPGVSTGEAMKAMEEMAAK 854

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                +      + ++I  + +     +   W   +  +  + L
Sbjct: 855 LPAGVGYEWNGISYEEKTSGGQAAPLYALSMLIVFLCLA---ALYESWSVPIAVMLVVPL 911

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   +    L G+  ++     ++T IG S  + +++ +   + M+     +       
Sbjct: 912 GVFGAVLAAMLVGLNNDIYLQVGLITTIGVSAKNAILIVEFAEEKMRE---GLPPAQAAL 968

Query: 763 KSINETLGRSVYTSMAAFISVLPM 786
           ++    L   + TS A    VLP+
Sbjct: 969 EAGKLRLRPILMTSFAFIFGVLPL 992


>gi|300717903|ref|YP_003742706.1| Acriflavine resistance protein B [Erwinia billingiae Eb661]
 gi|299063739|emb|CAX60859.1| Acriflavine resistance protein B [Erwinia billingiae Eb661]
          Length = 1038

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 79/689 (11%), Positives = 190/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++C  G L  L     +  ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVIAILLCLTGTLAIL-----KLPIEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITL+F      +    +V  
Sbjct: 50  PGASAETLENTVTQVIEQNMTGIDNMMYMSSQSSNTGQATITLTFTAGTNPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D +   +  T   + +I++             + S  +     D +   
Sbjct: 110 QLQAALRKLPQDVQTQGVTVTKTGDTNILMVAFVSTDGSMDKQDISDYVASNVQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP+++     TT+ +       N+       G     D  
Sbjct: 170 DGVGEVDAYGSQ-YAMRIWLDPNKMINYALTTSDIVSAIESQNSQVAVGQLGGLPSVDRQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                     ++       
Sbjct: 229 ALNATINSQSLL-------------NTPQQFRDITLRVNQDGSEVKLGDVADVALGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DFLSQYNGQAASGLGIKLASGANELQTDELVRARIEELSHFFPHGLKAEVAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +LS  G ++   ++
Sbjct: 336 SIEDVVKTLIEAVILVFVVMYLFMQNFRATLIPTIAVPVVLLGTFTILSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRDATRKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCATLLKPIAKGHHHGRRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     +A  W V   +L +  +   L        ++ +G     V
Sbjct: 516 NRMFNRNAERYERGVGKILAKAGRWMVLYVLLIAGMAFMFLRLPTSFLPLEDRGVFTTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L      +  ++   ++ +  +    F        G+     R+   +K    
Sbjct: 576 QLPPGSTLQETNKVVNKVEQYYLTEEKNNVLSVFSTIGAGPGGNGQNVARMFVRLKDWGD 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +T            ++     ++ 
Sbjct: 636 RPGAENTSFAIIERATAAFKKFKEGRVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   Q      + L        + +    ++    ++++   P 
Sbjct: 260 VKLGDVADVALGAEKYDFLSQYNGQAASGLGIKLASGANELQTDELVRARIEELSHFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +I + I + + +++  + +   L     + + +  T
Sbjct: 320 GLKAEVAYETTPFVKASIEDVVKTLIEAVILVFVVMYLFMQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +S RD   KS+ +
Sbjct: 380 FTILSAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRDATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +GG+       F++ +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 69/189 (36%), Gaps = 11/189 (5%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               +  G      +       +  IS + + + +   ++ W      +  + L +   L 
Sbjct: 853  FGLQWTGASYQERMSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGALV 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 G+E ++     +LT+IG S  + +++ +   +   + +      +   ++  + L
Sbjct: 913  ATWARGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---INSKGRDLLESTLEASKQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPM +    G S   +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMVISNGAGSSSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029

Query: 827  ---RAKNAR 832
               + K  +
Sbjct: 1030 FPVQEKPGK 1038


>gi|317049078|ref|YP_004116726.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Pantoea
           sp. At-9b]
 gi|316950695|gb|ADU70170.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. At-9b]
          Length = 1038

 Score =  205 bits (520), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 190/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  +        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLCGTLAII-----SLPIEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q +ITL+F      +    +V  
Sbjct: 50  PGASAETLENTVTQVIEQNMTGIDNLMYMSSNSSNTGQAQITLTFTAGTDPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L    +   +      + +I++             + S  +     D +   
Sbjct: 110 QLQTALRQLPSAVQSQGVTVNKTGDSNILMIAFVSTDGSMDKQDISDYVASNIEDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +               DP++L     TT  +       N        G     +  
Sbjct: 170 DGVGEVDAYGSQYSM-RIWLDPNKLNAYALTTDDVVSAIESQNAQVAVGQLGGLPSVEKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +                     ++       
Sbjct: 229 ALNATVNAQSML-------------QTPEQFKAITLKTNSDGSVVTVGDVADVAMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +      A L           V          
Sbjct: 276 DYLSRYNGQAASGLGIKLASGANEMNTDKLVRARIAELSQYFPHGLEAKVAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SITDVVKTLLEAILLVFLVMYLFMQNFRATLIPTIAVPVVLLGTFAVLYACGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FATVLAIGLLVDDAIVVVENVERLMSEEGLSPRAATRKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTVGAIYRQFSITIVSAMILSVLVALILTPALCATLLKPLEKGQHHGRRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +  +        +A   +++  W +    +  + +   +         + +G     V
Sbjct: 516 NRHFNANAARYERGVARILVKSGRWMLLYLAIIGVMAFMFIHLPTSFLPQEDRGVFLTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L    + +  ++   ++ +  +    F        G+     R+   +K    
Sbjct: 576 QLPAGATLQQTSNVVAKVEEYYMTAEKDNVLSVFSTIGAGPGGNGQNVARMFIRLKDWED 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RPGSDRTSFAIIDRATKAFNKIREARVIA 664



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +  D   +      + L        + +   +++     ++++  P 
Sbjct: 260 VTVGDVADVAMGAEKYDYLSRYNGQAASGLGIKLASGANEMNTDKLVRARIAELSQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKVAYETTPFVKASITDVVKTLLEAILLVFLVMYLFMQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A +  IG  V+D +VV + +     +    +S R    KS+ +
Sbjct: 380 FAVLYACGYSINTLTMFATVLAIGLLVDDAIVVVENV--ERLMSEEGLSPRAATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +G   G++   F+I +   ++++   ++ +   +   + 
Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTVGAIYRQFSITIVSAMILSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 71/202 (35%), Gaps = 8/202 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
              +      +  L      +  G      L       +  IS + + + +   ++ W   
Sbjct: 837  TAMDAMEKLVSQLPMGIGFQWTGASYQERLSGSQAPALYAISLLVVFLSLAALYESWSIP 896

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L    L G+E ++     +LT+IG S  + +++ +   +   + + 
Sbjct: 897  FSVMLVVPLGVVGALLATWLRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---INSK 953

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++  + L   + TS+A    VLPMA+    G     +    +  G++ A  
Sbjct: 954  GRELIESTLEASRQRLRPILMTSLAFIFGVLPMAISAGAGSGSQHAVGTGVMGGMISATV 1013

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +IF      + +        +
Sbjct: 1014 LAIFFVPLFFVLVRRRFPLKEK 1035


>gi|301166848|emb|CBW26425.1| protein-export membrane protein [Bacteriovorax marinus SJ]
          Length = 307

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 154/304 (50%), Gaps = 3/304 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F +I +   I F+        IS+L    S+  + T  +NYG+DF+GG ++ +     +
Sbjct: 1   MFEIISNNTKINFVNKFSITTVISLLLVSVSLFGIIT-KMNYGVDFRGGAEIQLKFKESI 59

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R  L       I+ Q           ++ Q  ++       ++ +  +       
Sbjct: 60  NLDGLRKELADAGFKGIAAQTIGERSQNEFLVKVQGDETNLNQITEKVSETLLASYASKG 119

Query: 650 TIQNT-EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                 +IVGPK   +L   G   ++ + IA++IYI +RF + ++ GAI  L  D+T  L
Sbjct: 120 VEVRKVDIVGPKAGAQLRISGFQAMLWALIAIMIYIGLRFDFKYSPGAIVALFHDVTIIL 179

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G FA F +EF L  VAA+L +IGYSVND V+VYDR+R+  +   +++     I+ ++NET
Sbjct: 180 GVFAFFNVEFTLQTVAALLAVIGYSVNDTVIVYDRVRE-HEEKNSALDLASHINNAVNET 238

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS+      + M  +GG  I  F + ++ G+++   SSIF+AAP+ LF    + 
Sbjct: 239 LSRTIMTSLTTLFVSVVMYFFGGLAIRDFFLAISLGVLIGTYSSIFVAAPVTLFFDRVKG 298

Query: 829 KNAR 832
              +
Sbjct: 299 SQEK 302


>gi|257468003|ref|ZP_05632099.1| protein translocase subunit secF [Fusobacterium ulcerans ATCC
           49185]
 gi|317062289|ref|ZP_07926774.1| translocase subunit SecF [Fusobacterium ulcerans ATCC 49185]
 gi|313687965|gb|EFS24800.1| translocase subunit SecF [Fusobacterium ulcerans ATCC 49185]
          Length = 314

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 144/284 (50%), Gaps = 2/284 (0%)

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
            VG+S++  + S+   FT GLNYGIDF GG    +    P+ L+ + +NL+ +       
Sbjct: 12  FVGLSLVIVVLSLGAFFTKGLNYGIDFSGGNLFQLRFENPITLNDINNNLDEISKEINQV 71

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                +                       V   + +I     +   E VG  +  EL   
Sbjct: 72  NPNSRKVQISEDNTVIIRTPELTETEKTEVLDSLKKIGNF-DVNKEEKVGASVGEELKTS 130

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I  + I A  +++YI  RF++ FA+ A+  L  D+   +G  +L G E +   +AA+LT
Sbjct: 131 AIYALGIGAFLIILYITFRFEFTFAVAAVAALFHDLIIAVGVISLLGYEVDTPFIAAILT 190

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           ++GYS+ND +VV+DR+R+NMK     ISF   +DKS+N+ + RS+ TS+    +++ + V
Sbjct: 191 ILGYSINDTIVVFDRIRENMKRKNK-ISFEACLDKSVNQVMIRSINTSVTTLFAIIAILV 249

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +GG  + +F + +  GI+    SS+FIA P++ F+   +    +
Sbjct: 250 FGGDSLKTFIVTLLIGILAGTYSSVFIATPLVYFLDKNKKGPNK 293


>gi|126736001|ref|ZP_01751745.1| protein-export membrane protein SecD, putative [Roseobacter sp.
           CCS2]
 gi|126714558|gb|EBA11425.1| protein-export membrane protein SecD, putative [Roseobacter sp.
           CCS2]
          Length = 553

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 193/546 (35%), Positives = 307/546 (56%), Gaps = 31/546 (5%)

Query: 7   LVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNRI 44
            +++  +   +GL  A+PN                         ++   ++PS +P N +
Sbjct: 8   KLVMIWLTVIVGLTFAMPNGFYGRVETHNDAMAEIETGVTNAELEADAAQWPSFLPSNLV 67

Query: 45  SLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLS 101
           +LGLDLRGG+HL++EV  +D    F+  +   +R  L+ E   +    Q+ +   ++ + 
Sbjct: 68  NLGLDLRGGAHLLVEVQVEDVHVSFIDGFWPTVRDALRLETQTIGFFEQLDSPPTELRIR 127

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
            ++        + V      V +        N+ V      ++I LS+  I  +    I 
Sbjct: 128 ISEPAGAARAFEIVRGLATPV-ASFTGAASTNIDVRLNGAVLTITLSEAEIAAMNERTIM 186

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
           Q++EIIR+RID++G  E TIQR GS RIL+Q+PG    + + +LLGTTA+++F+ V+   
Sbjct: 187 QTLEIIRRRIDEVGTREPTIQRQGSERILVQVPGVGSANEIIELLGTTAQLTFNPVISPT 246

Query: 222 SKKGFMFGVR----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
           S      G         D+ G  Y+V+ +  ++G  L  A  +FD    +P V   F+  
Sbjct: 247 SDPDARPGTGNIILPSLDTPGQYYIVQRRPVVTGEDLENAQLDFDQNG-RPAVAFRFNTS 305

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
            AR F + T +NIG+P A+VLD  V++AP I   IP G   I+GNFT+E A  LA +LRA
Sbjct: 306 AAREFGDYTLENIGRPFAIVLDSEVISAPTIQSHIPGGSGIITGNFTVEEATNLAVLLRA 365

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           G+LP +L  +EER VG +LG+DSI  G  A +   + I+++MI+ YG +G+ A+ ++ +N
Sbjct: 366 GALPAELEFLEERTVGPELGADSIAAGQIACIVAGIAILVYMILSYGLFGVFANIALVIN 425

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           V L   LLS++GATLTLP IAGIVL IG+AVD+N++V ERIREE +  +    ++++G+ 
Sbjct: 426 VALIFGLLSIVGATLTLPGIAGIVLTIGMAVDANVIVFERIREELKTAKGPARAIELGYE 485

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           +A S+I D+NIT  I  V+L   G G V+GFA T+   I+ S+FTAI + R++++     
Sbjct: 486 KALSSIIDANITTFITAVILLVMGSGPVQGFAWTLMFGIMTSVFTAIFVTRSLIVIWFSR 545

Query: 518 KKMKSI 523
            + K+I
Sbjct: 546 TRPKTI 551



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 87/173 (50%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  + I  G +  I++ IA+L+Y+ + +   F + A   L++++    G  ++ G  
Sbjct: 381 GPELGADSIAAGQIACIVAGIAILVYMILSYGL-FGVFANIALVINVALIFGLLSIVGAT 439

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V+V++R+R+ +K   T+      I+    + L   +  ++
Sbjct: 440 LTLPGIAGIVLTIGMAVDANVIVFERIREELK---TAKGPARAIELGYEKALSSIIDANI 496

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FI+ + + V G   +  FA  + FGI+ +  ++IF+   +++  +      
Sbjct: 497 TTFITAVILLVMGSGPVQGFAWTLMFGIMTSVFTAIFVTRSLIVIWFSRTRPK 549


>gi|221638201|ref|YP_002524463.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides KD131]
 gi|221158982|gb|ACL99961.1| Protein-export membrane protein secF [Rhodobacter sphaeroides
           KD131]
          Length = 324

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 113/312 (36%), Positives = 176/312 (56%), Gaps = 7/312 (2%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              R  L P+   I F  A     G S+     S+    T GLN+GIDF+GG  +   + 
Sbjct: 1   MAFRLKLCPEKTNIDFFWAAPVTFGFSVFLMAASLVAWLTLGLNFGIDFRGGTTIRTEST 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKK 640
           + VD++  R+ LE   +GDIS                +VR+  Q          +  V++
Sbjct: 61  QTVDVAAYRAALEGQDLGDISITEVFDPGFRADQHVAMVRIGAQDATQSITPEQIGQVEE 120

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +  + P  T  + E VGPK+S ELI   I+ V  +   + +YIW+RF+W FALG++  L
Sbjct: 121 ALKTVDPSITFPSVESVGPKVSGELIWSAIMAVAAACAGIAVYIWLRFEWQFALGSVAAL 180

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           I D+  T+G FALF I+F+LT VAA+LT++GYS+ND VVV+DR+R+N+  Y  ++  RD+
Sbjct: 181 IHDVLVTIGVFALFQIKFDLTTVAALLTVLGYSINDTVVVFDRLRENLVKY-KTMPLRDV 239

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ S+NETL R++ T M   I+++ + V+GG VI  F   + FG+V+   SSI++A  I+
Sbjct: 240 MNLSVNETLSRTIMTLMTTLIALVSLLVFGGDVIRGFVFAITFGVVIGTYSSIYMAKNIV 299

Query: 821 LFIYDWRAKNAR 832
           L++   R    +
Sbjct: 300 LYLGVDRGGPKK 311


>gi|4996614|dbj|BAA78559.1| protein-export membrane protein [Prevotella ruminicola]
          Length = 383

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 95/364 (26%), Positives = 163/364 (44%), Gaps = 38/364 (10%)

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
           TA+ + R +   ++   K  ++         L        FM +      I I+F+I   
Sbjct: 12  TAVYLTRVVYDAMLSKDKWTNLTFVTGYSKNL-MQNAKFNFMSSYKKSYTIWIVFAIICC 70

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK------ 615
              +  GL+  IDF GG    V  ++   +  VR  +    I  I  +            
Sbjct: 71  ISFYVRGLSRSIDFTGGRNYVVTLDKQTPVEDVRKAMVGAFINTIGEKANQEANTSVIAL 130

Query: 616 -----------NFLVRLQYQPGDSVAQTRVLEMVKKK------------ITEIVPLSTIQ 652
                      N+ +       D  A+T +   +KK               ++    +I 
Sbjct: 131 GTDGKTVRISTNWDIESNNPEVDDKAETILFNSLKKAGLVSQESADKFKNPDVREGGSII 190

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           ++  VGP +++++ R   + V I+  A+  YI +RF+ W F++GA+  L LD    +G +
Sbjct: 191 SSAKVGPSVAKDITRGAYISVAIALFAIFFYILLRFRNWAFSVGAVVALALDALLVIGIY 250

Query: 712 AL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
           +L        +E +   + A+LT++GYS+NDKVVV+DR+R+N+ LY      + L + S+
Sbjct: 251 SLCWGIVPMSLEIDQVFIGAILTVVGYSINDKVVVFDRIRENLGLYGKR-DRQQLFNDSL 309

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           N+TL R++ TS+   I +L + + GG  I SF++ M  G+V    SS+FIAAP       
Sbjct: 310 NQTLARTINTSVTTLIVLLAIFILGGDSIRSFSLAMILGVVFGTLSSLFIAAPTAFLWMG 369

Query: 826 WRAK 829
              K
Sbjct: 370 RTIK 373


>gi|194335196|ref|YP_002016990.1| protein-export membrane protein SecF [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307673|gb|ACF42373.1| protein-export membrane protein SecF [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 311

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 148/309 (47%), Gaps = 11/309 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I    +  F+R R    G S++  +  +  L   GLNYGIDF+GG ++ +   +  D+
Sbjct: 1   MRIFHNTSFNFIRYRKIAYGFSLVLLVSGLVSLAVKGLNYGIDFRGGSEVVIRFEKDADV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +RS L++  +     Q      +              + + L               I
Sbjct: 61  GQIRSILDAAGVSGTLKQY---GMDRSFLFSTVFQGDTGELKSLVSNALNDRIKDNRHEI 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP I+ +L    +  ++ + IA+LIY+ IRF+  FA   +  ++ D+   LG F
Sbjct: 118 VRIDAVGPSIASDLKWSAVKALVAALIAILIYVGIRFETKFAATGVLAILHDVLTVLGIF 177

Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           ++ G       +E + + +AA LT+ GYS+ D VVVYDR+R+ ++       +  + ++S
Sbjct: 178 SILGGLFAFMPLEMDQSIIAAFLTIAGYSITDTVVVYDRIRERIR-GQKPSEYERIFNES 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +N+TL R++ TS    ISV  + ++ G  I  FA  +  GI++   SSIF+AAP++    
Sbjct: 237 MNQTLNRTIITSGTTLISVFVLFIFAGPAIRGFAFAVFIGILIGTYSSIFVAAPLVYDWL 296

Query: 825 DWRAKNARI 833
                + R+
Sbjct: 297 RITKSSVRL 305


>gi|197335292|ref|YP_002156795.1| protein-export membrane protein SecD [Vibrio fischeri MJ11]
 gi|197316782|gb|ACH66229.1| protein-export membrane protein SecD [Vibrio fischeri MJ11]
          Length = 607

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 150/524 (28%), Positives = 274/524 (52%), Gaps = 37/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  ++  +    +  R+ L++  I
Sbjct: 93  NLAPLTPDWLTSIGAAPMKLGLDLRGGVHFLMEVDMDAAMSKLIGQQEESFRTDLREAKI 152

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +              ++   +        D       +  + ++  
Sbjct: 153 RYRAIRDSGKDSVEVVLRSEEQLAEAKKVLSDAHR--------DMTFVESESNGQFKLIA 204

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ IIR R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 205 TFTEQRLQEIRNYAVEQNITIIRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264

Query: 206 LGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V                G     D +G   +++ ++ + G  +    ++
Sbjct: 265 LGATATLEFREVDDKADLAAAASGRAPAGSEIKEDRNGRPVVLKKRIILGGASITD-ASS 323

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    +R NIGK +A V                       
Sbjct: 324 SADEYGRPQVNISLDSEGGSKMTAFSRKNIGKLMATVFTEYKDSGRRTPEGRVILSKTEE 383

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 384 VINQATIQSALGRSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNID 443

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A + G+V +++F +V Y  +GLVA+ ++  N++L + ++S++  AT+TLP IAGIV
Sbjct: 444 MGIQACIWGMVAVMIFTLVYYRGFGLVANLALMANLVLIIGVMSMIPGATMTLPGIAGIV 503

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R  ++   ++  G++ A+STI D+NIT LI  ++LF  G
Sbjct: 504 LTVGMAVDANVLIFERIREELRDGRNPQQAIHQGYANAFSTIADANITTLITAIILFAVG 563

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GA++GFA+T+ + IL SMFTAI   R ++  +   K++  + I
Sbjct: 564 TGAIKGFAVTLSIGILTSMFTAIVGTRCVINLVYGGKRVDKLSI 607



 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 89/210 (42%), Gaps = 5/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           R     G           +  +   ++   +I     +GP + ++ I  GI   I   +A
Sbjct: 396 RSFRITGIDSQAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVA 455

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKV 738
           ++I+  + ++  F L A   L+ ++   +G  ++  G    L  +A ++  +G +V+  V
Sbjct: 456 VMIFTLVYYR-GFGLVANLALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANV 514

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           ++++R+R+ ++      + +  I +            ++   I+ + +   G   I  FA
Sbjct: 515 LIFERIREELRD---GRNPQQAIHQGYANAFSTIADANITTLITAIILFAVGTGAIKGFA 571

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++ GI+ +  ++I     ++  +Y  + 
Sbjct: 572 VTLSIGILTSMFTAIVGTRCVINLVYGGKR 601


>gi|167462403|ref|ZP_02327492.1| preprotein translocase subunit SecF [Paenibacillus larvae subsp.
           larvae BRL-230010]
 gi|322382944|ref|ZP_08056776.1| preprotein translocase subunit SecF-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
 gi|321153064|gb|EFX45522.1| preprotein translocase subunit SecF-like protein [Paenibacillus
           larvae subsp. larvae B-3650]
          Length = 326

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 139/301 (46%), Gaps = 4/301 (1%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                  D I   F+  R     IS +  +  + +LF   +N+G+DFK G  + +   + 
Sbjct: 16  HHAIHDADNIKFDFVNHRKIFFWISTIIIVIGVIVLFWKQMNFGVDFKAGTSMDINVGQS 75

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +     +       +         G +           D       ++ ++    E    
Sbjct: 76  ITQEQAKDVFAKSAVDPQPAAVSVGGEGNQRISAR--FDKDLPDADIKKIQAAFKEAYGD 133

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
              Q    V P+I++E+  K I+ V+I+++ + IY+ IRF+W FAL AI  ++ D    +
Sbjct: 134 KVSQEVNTVSPEIAQEMGIKAIIAVLIASVFISIYVSIRFEWRFALAAIIAILHDAMIVI 193

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSIN 766
             FA+F  E +L  VAAV+T +GYS+NDK+V++DR+R+NM+     T      L++ SI 
Sbjct: 194 CMFAIFRFEVDLPFVAAVMTTVGYSINDKIVIFDRIRENMRFSKLKTEQDVVYLVNHSIW 253

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            T+ RS+ T +    + L + ++G   I  FA+    G+   A SSI IA+P+       
Sbjct: 254 STMARSINTVVTVLFAALCLFIFGSESIKLFALAKLIGLASGAYSSICIASPLWFMFKRK 313

Query: 827 R 827
            
Sbjct: 314 S 314


>gi|251772532|gb|EES53098.1| SecD export membrane protein [Leptospirillum ferrodiazotrophum]
          Length = 523

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 175/520 (33%), Positives = 277/520 (53%), Gaps = 32/520 (6%)

Query: 20  LIALPNFLP-QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78
           +  LP+     S+       +P   ISLGLDLRGG  + L+V E+  ++G L        
Sbjct: 22  VFLLPSLPVWNSLPPGVKKVLPDGAISLGLDLRGGMSVTLQVMEEKAISGTLTEIVA--- 78

Query: 79  SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT 138
                              IT SF     K+ + D +      +                
Sbjct: 79  ----GLSEKGVHAEVQGTSITASFDTPAKKKEVLDYIASRAPFMKK-----------TQE 123

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
           T   +++ LS+    ++  HA+ Q++E+IR RIDQ G+SE  I++ G  RILIQLPG  D
Sbjct: 124 TSGTLTLSLSEAEAARIRKHAMTQAIEVIRNRIDQFGVSEPVIEQQGRDRILIQLPGVTD 183

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY-------------LVED 245
           P R   L+G TA++ F     +     ++ G   L   D   Y              +  
Sbjct: 184 PERAMALIGRTARLEFKLADDSTDPALYISGKTPLPPGDEILYGNASARSGGSRIPYLLK 243

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
            V + G            + ++P V ++F+  GA+ F  +T+D++ + LA+VLD  V +A
Sbjct: 244 SVPLMGGDTISDARVAFGQFNEPYVSLTFNSTGAKLFDRITKDHVKERLAIVLDKTVYSA 303

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           PVI + I  G+AQI+G+F+++ A  LA +LR+G+LP  + I++   VG  LG DSI  G 
Sbjct: 304 PVIQEEISGGQAQITGSFSLKEAKDLAIVLRSGALPAPVRILQNVTVGPSLGKDSIRAGL 363

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A +  L+L++ FM V Y   G+VADF++ LN++  L  ++ L ATLTLP IAG++L +G
Sbjct: 364 HATLIALLLVLAFMAVYYRLSGVVADFALMLNMLFLLGAMAALHATLTLPGIAGVILTVG 423

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           + VDSN+L+ ERIREE R  + V  S+D G+ +A+ TI DS++T LI  ++LF FG G +
Sbjct: 424 MGVDSNVLIFERIREELRAGKPVRSSIDSGYDKAFLTIVDSHVTTLITAIILFIFGTGPI 483

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +GFA+T+ + I I++FT+++  R +   + R  K++ + I
Sbjct: 484 KGFAVTLTVGIAINLFTSLAGTRIVFDLLARRSKLERLSI 523



 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/181 (20%), Positives = 85/181 (46%), Gaps = 5/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
               VGP + ++ IR G+   +I+ + +L ++ + ++    + A   L+L++   LG  A
Sbjct: 346 QNVTVGPSLGKDSIRAGLHATLIALLLVLAFMAVYYRLS-GVVADFALMLNMLFLLGAMA 404

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                  L  +A V+  +G  V+  V++++R+R+ ++        R  ID   ++     
Sbjct: 405 ALHATLTLPGIAGVILTVGMGVDSNVLIFERIREELRA---GKPVRSSIDSGYDKAFLTI 461

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           V + +   I+ + + ++G   I  FA+ +  GI +   +S+     I+  +   R+K  R
Sbjct: 462 VDSHVTTLITAIILFIFGTGPIKGFAVTLTVGIAINLFTSLA-GTRIVFDLLARRSKLER 520

Query: 833 I 833
           +
Sbjct: 521 L 521


>gi|323697901|ref|ZP_08109813.1| protein-export membrane protein SecF [Desulfovibrio sp. ND132]
 gi|323457833|gb|EGB13698.1| protein-export membrane protein SecF [Desulfovibrio desulfuricans
           ND132]
          Length = 353

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 162/347 (46%), Gaps = 47/347 (13%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVD 590
            +I     + F+  R     +S +  +  +  L   G   YGIDF GG+ + V  ++ VD
Sbjct: 4   QIIKPDTNLDFIGIRKIAFILSAVLILAGLGSLLIKGGPKYGIDFAGGMIVQVKVDKAVD 63

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  ++  +++L++  +  Q+   E +    ++    +  ++    ++       +     
Sbjct: 64  VGAIKDAVDTLKLPGLVVQSLGLEGDHEYLIRTSSSNISSEEVRGKINTALTDNLGASFE 123

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--------------------- 689
           IQ  E+VGPK+  +L  + +  +  + + + +YI  RF+                     
Sbjct: 124 IQRLEMVGPKVGADLRSQALEALFYAVLLIAVYISGRFEQRWTAAAVMAAALAGGVYGIG 183

Query: 690 -------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                                      +ALGA+  LI D+  T+G F++   EF+LT +A
Sbjct: 184 LLGLDMGWLILVALIITVGLCWYLKLNYALGAVVALIHDVIITVGLFSIMNKEFDLTIIA 243

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND ++V+DR+R+N       +SF  +I+ S+N+TL R++ TS    + VL
Sbjct: 244 ALLTIVGYSLNDTIIVFDRIRENTHAKQGKMSFGRIINLSVNQTLSRTIMTSATTLLVVL 303

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + V GGSVI  FA+ +  GI V   SSIF+A+PIL          A
Sbjct: 304 CLYVMGGSVIHDFALALLIGITVGTYSSIFVASPILYGFGPSEQPEA 350


>gi|114705192|ref|ZP_01438100.1| Acriflavin resistance protein:Hydrophobe/amphiphile efflux-1 HAE1
           [Fulvimarina pelagi HTCC2506]
 gi|114539977|gb|EAU43097.1| Acriflavin resistance protein:Hydrophobe/amphiphile efflux-1 HAE1
           [Fulvimarina pelagi HTCC2506]
          Length = 1055

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 83/685 (12%), Positives = 179/685 (26%), Gaps = 46/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL       L    ++++P  +P               + +    
Sbjct: 9   RPIFAAVISILIVLGGLAS-----LTSLPIEQYPQLVPP-------------QVQVRATY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   +       IT++FA     +     V  
Sbjct: 51  PGASAETIAQTVSAPIEQQINGVEDMLYMQSTNSSTGTATITVTFAAGTDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q  ++ L    ++  +  + +    + +   + +     A   S   +   +D++   
Sbjct: 111 RVQQASASLPEQVQRLGVTVSKQNSSILAVLTMSSNDPRYDATYVSNYTLLNVLDELKRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P  L Q   T   ++      N       FG        
Sbjct: 171 PGIGQAQLFGARDYSMRIWLRPDALAQYGLTPGDVASAIRDQNAQFAAGQFGGEPNGSDL 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V     +             P        I   +             +       
Sbjct: 231 AFTYSVTTAGRL-------------PDAKAFENIILRSDENGSSLLLKDVARVELGAQDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +   T+         L           +          
Sbjct: 278 GFNATYNGTPTVPIGIYLQPGANALDTLAVTRERMDELSQSFPDGIDYAIPYDTTKFIEA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ +++I T  +L   G ++ L ++
Sbjct: 338 SIEEVILTFIEAMILVFLVVYLFLQSFRATLIPMLAVPVSIIGTFGVLLAFGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +     S     +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEGLSPKEATAKAMSEVAGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   R FAIT+ +S+ IS   A+S+  A+   +++ K  K            
Sbjct: 458 VAFLGGLAGTMYRQFAITIAVSVSISGIVALSLTPALCSVLLKNKHSKPFLPFRWFNAAF 517

Query: 534 IPDCI------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                      A    RA    +    L            G     + +G   +  +   
Sbjct: 518 DRLTRGYGAGVAFVMRRAAMALLLFCGLIGGSYYFFQTLPGSLVPEEDQGVNFVIAILPP 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              LS     ++ +          D    F            +       +K       P
Sbjct: 578 AASLSRTTEVMDQVYQNLSQHPAVDDVTAFAGFDLLSGSQKSSAGVAFVSLKDWEERTDP 637

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
               +N       ++  +    I+ 
Sbjct: 638 SLDARNLVGPFIGMNSGIQDGMILA 662



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 90/243 (37%), Gaps = 7/243 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q    +          +        +++    V      ++++  P     
Sbjct: 266 DVARVELGAQDYGFNATYNGTPTVPIGIYLQPGANALDTLAVTRERMDELSQSFPDGIDY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                  K     I + I+  I + I + + +++    +   L  +  + + I  T G  
Sbjct: 326 AIPYDTTKFIEASIEEVILTFIEAMILVFLVVYLFLQSFRATLIPMLAVPVSIIGTFGVL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             FG   NL  +  ++  IG  V+D +VV + +     + T  +S ++   K+++E  G 
Sbjct: 386 LAFGFSINLLTLFGLVLAIGIVVDDAIVVLENV--ERIMTTEGLSPKEATAKAMSEVAGP 443

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWR 827
            +   +      +P+A  G   G++   FAI +A  + ++   ++ +   +  + + +  
Sbjct: 444 VIAIVLVLCAVFIPVAFLGGLAGTMYRQFAITIAVSVSISGIVALSLTPALCSVLLKNKH 503

Query: 828 AKN 830
           +K 
Sbjct: 504 SKP 506



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 65/169 (38%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G+  +    + + + +  ++ +W   +  +  +   +   L    L GI+ ++     +
Sbjct: 869  TGLFAIGFGILMVFLILAAQYERWSLPIAVLLAVPFAMFGALLAIFLRGIDNDVYFQIGL 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TL+G +  + +++ +     +      +S  D   +         V TS+A  + V+P+
Sbjct: 929  VTLVGLAAKNAILIVEFA---VLKREEGLSAFDAALEGAKLRFRPIVMTSLAFILGVVPL 985

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+    G +   S    +  G++ A   +IF        +       A+
Sbjct: 986  AISTGAGSASRHSIGTGVIGGMLFATFVAIFFIPLFYKLLSPSDKAMAK 1034


>gi|90414615|ref|ZP_01222588.1| protein export protein SecF [Photobacterium profundum 3TCK]
 gi|90324331|gb|EAS40900.1| protein export protein SecF [Photobacterium profundum 3TCK]
          Length = 315

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 167/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F L+    AI FMR   +    S++    +I  + T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQLLKVDNAIDFMRWSKFAFVFSLMMIAVAIGTVATKKLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL  +R +LE+   GD   QNF   ++ LVRLQ +  ++  +    +++           
Sbjct: 61  DLLKIRDSLEAAGFGDAIVQNFGTARDVLVRLQPRE-NAKGEVLGNQIIDALKVGTGQSV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +IIS I +L+Y+ +RF+W  A GA+  L  D+  T+G
Sbjct: 120 EMRRIEFVGPNVGDELAEAGGLAIIISLICILLYVSMRFEWRLAAGAVLALAHDVIITIG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  +E +LT VAA+LT++GYS+ND +VV+DR+R+N +      +  D+I+ SI +TL
Sbjct: 180 IFSLLQVEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-DVINNSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + + GG++I  FA+ +  GI V   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVIALFMKGGTMIHGFALALLIGITVGTYSSIYVASALALKLGITRE 297


>gi|77460840|ref|YP_350347.1| preprotein translocase subunit SecD [Pseudomonas fluorescens Pf0-1]
 gi|77384843|gb|ABA76356.1| preprotein translocase [Pseudomonas fluorescens Pf0-1]
          Length = 623

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 162/522 (31%), Positives = 273/522 (52%), Gaps = 36/522 (6%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90
              ++   +  + + LGLDL GG H +LEVD D  ++  L++Y  +++S L+KE +   S
Sbjct: 111 TTPQWLRNLAAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKEKLRYRS 170

Query: 91  MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
           + Q+   I L F+D+  +E     +          +  D     ++        + ++  
Sbjct: 171 LPQLNGAIQLGFSDADSREQARALIRKNFND-FDIVPADLNGQPVLR-------LAMTPA 222

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
            + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++LG TA
Sbjct: 223 KLAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTA 282

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            + F                   R+       +E  + I+G  +  A A FD +   P V
Sbjct: 283 NLEFRLAAEP-GASKATSETFEFREGKRPPAQIERGLIITGDQVTDAKAGFDSQHGTPEV 341

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI---------------------- 308
           +I  D  G       TR N+G+ +AV+   +      +                      
Sbjct: 342 NIRLDGHGGDLMNRATRSNVGRSMAVIFIEQRPVTTYVKQVVDGVEKDVPVQTFKEEKKI 401

Query: 309 -----NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D+I K
Sbjct: 402 ISLATIQSPLGAQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITK 461

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  A + G++ + LF+I +Y  +GL+A  ++ +N++L LAL+SLLGATLTLP IAGIVL 
Sbjct: 462 GIDASLWGMLFVSLFIIAIYRFFGLIATVALAVNMVLLLALMSLLGATLTLPGIAGIVLT 521

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+L+  RIREE     +V  +++ GF RA++ I D+N+T L+   +LF  G G
Sbjct: 522 MGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAILDANLTTLLVGGILFAMGTG 581

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 582 PVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 623



 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 92/250 (36%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + V   V +         +    +    ++ L       G +         +  +
Sbjct: 375 VTTYVKQVVDGVEKDVPVQTFKEEKKIISLATIQSPLGAQFRITGLNGQGESSELALLLR 434

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F L A   L 
Sbjct: 435 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRF-FGLIATVALA 493

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           +++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 494 VNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMTVQRAI 550

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++         +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 551 NEGFGRAFTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 610

Query: 822 FIYDWRAKNA 831
            I+  R    
Sbjct: 611 LIFGGRDFKK 620



 Score = 45.8 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 31/118 (26%), Gaps = 23/118 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  IL   +  IGL+ + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYILILAVLAIGLIYSAPNLYPDDPAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D       +              +   S+        +    +  +    D V   L
Sbjct: 51  LDRVSTALKES----------GINVKASSLAANGKGGLIRLTKAEDQLPAKDVVRKAL 98


>gi|89053576|ref|YP_509027.1| preprotein translocase subunit SecF [Jannaschia sp. CCS1]
 gi|88863125|gb|ABD54002.1| protein translocase subunit secF [Jannaschia sp. CCS1]
          Length = 328

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 112/306 (36%), Positives = 176/306 (57%), Gaps = 8/306 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+P   +  F +      G SI+  I S+ +  + GLN+GIDF GG  +   +   
Sbjct: 1   MRLRLVPQETSFDFFKYARVTFGASIVAVIASLVIWLSVGLNFGIDFLGGTTIRTDSTVQ 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+++  R+ LE L +GD+                  VR+Q Q G       ++  ++  +
Sbjct: 61  VEVAEYRAALEPLGLGDVVISEVFDPNFAADQHVVTVRIQAQEGAEAVTPEIILAIETAL 120

Query: 643 TEI-VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
            E   P  T  + E VGPK+S ELI+  I+ V+ S  A+L+YIW+RF+W F++GA+  LI
Sbjct: 121 LEAVDPAMTFPSVESVGPKVSGELIQTAIIAVLASLGAILVYIWLRFEWQFSVGAVAALI 180

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            DI  T+G F+LF I F+L  +AA+LT++GYS+ND VV++DR+R+N+  Y    + RD++
Sbjct: 181 HDIILTIGVFSLFQIRFDLATIAALLTIVGYSINDTVVIFDRLRENLIKY-KQKALRDVM 239

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + S NETL R++ TS    I+++ + V GG VI  F   +A+G+VV   SSI++A  ++L
Sbjct: 240 NLSANETLSRTLMTSGTTLIALIALIVLGGDVIRGFVFAIAWGVVVGTYSSIYVAKNVVL 299

Query: 822 FIYDWR 827
            I   R
Sbjct: 300 MIGVKR 305


>gi|16125060|ref|NP_419624.1| AcrB/AcrD/AcrF family protein [Caulobacter crescentus CB15]
 gi|221233787|ref|YP_002516223.1| cation/multidrug efflux pump AcrB2 [Caulobacter crescentus NA1000]
 gi|13422054|gb|AAK22792.1| AcrB/AcrD/AcrF family protein [Caulobacter crescentus CB15]
 gi|220962959|gb|ACL94315.1| cation/multidrug efflux pump acrB2 [Caulobacter crescentus NA1000]
          Length = 1051

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 72/691 (10%), Positives = 179/691 (25%), Gaps = 51/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           + ++P                   + +  + 
Sbjct: 9   RPIFAWVIAIVIMLAGALAI-----RTLPIAQYPEIALP-------------QVSISANY 50

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++    L        +     +  +TL+F      +    +V  
Sbjct: 51  PGASAKTVEDSVTQVIEQKMKGLDGLDYMSSTSDGSGSATVTLTFKAGTDIDIAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  + ++  L         +++     +   +   + +  +     D +   
Sbjct: 111 KLQTATALLPQEVQQQGLTVAKSARNFMMVIGLYSEDPKTTGADLADYMASNLQDPLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     T A ++      N        G        
Sbjct: 171 DGVGDIQLFGSQ-YAMRIWLDPQKLASFSLTPADVAAAIRAQNAQVSAGQIGGTPNLPGT 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G    +  +  +                 +    I  +  G           +       
Sbjct: 230 GLNATITAQSRL-------------QTPEQFRQIIVKNTSGGATVRLSDVARVELGAESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L          ++   +      
Sbjct: 277 ASIAKFNGYQAAGMAIKLAPGANALDTAAAVNARMAQLEKNFPANYKYVIPYDSTPFVKL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 337 SIEEVVKTLVEAIILVFIVMFLFLQNWRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +     +     +    +      V 
Sbjct: 397 FGLVLAIGLLVDDAIVVVENVERVMSEEGLSPKEATRKSMNEITGALIGIALVLAAVFVP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +       
Sbjct: 457 MAFFGGSQGVIYRQFSITIVSAMALSVVVALVLTPALTATMLKPVKAGHHEEKTGFFGWF 516

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +           +     +   W    + +     +  +         + +G +   V
Sbjct: 517 NRSFNDMSSRYQGSVRKILGKRGRWMAIYAAIIVAMGLLFVRLPSAFLPEEDQGTMFTLV 576

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                       + L+ ++   +  +    +  F V      G           +K    
Sbjct: 577 QLPAGATEEKTLAVLDQVRDHFLVGEKEAVQSVFTVSGFSFAGAGQNAGLAFVRLKDFEH 636

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                   Q           +     +  ++
Sbjct: 637 RKSANLKAQAVAGRAMGAFSQFRDAMVFAIV 667



 Score = 86.7 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 90/241 (37%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +      +    +   +        +++     +     ++ +  P 
Sbjct: 261 VRLSDVARVELGAESYASIAKFNGYQAAGMAIKLAPGANALDTAAAVNARMAQLEKNFPA 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +             +  I + +  ++ + I + I +++  + W   L     + + +  T
Sbjct: 321 NYKYVIPYDSTPFVKLSIEEVVKTLVEAIILVFIVMFLFLQNWRATLIPTIAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A FG   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+NE
Sbjct: 381 FGVLAAFGYSINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATRKSMNE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA +GG   VI   F+I +   + ++   ++ +   +   + 
Sbjct: 439 ITGALIGIALVLAAVFVPMAFFGGSQGVIYRQFSITIVSAMALSVVVALVLTPALTATML 498

Query: 825 D 825
            
Sbjct: 499 K 499



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + L +   L      G+  ++     +LT +G +  + +++ +  +   
Sbjct: 893  SWSIPLAVIMVIPLGVIGALLATFARGLSNDIYFQVGLLTTMGLAAKNAILIVEFAKD-- 950

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             LY   +   +   +++   L   + TS+A    VLP+A+    G     +    +  G+
Sbjct: 951  -LYEKGMGLIEATLEAVRLRLRPIIMTSLAFVFGVLPLAISNGAGSGAQHAIGTGVIGGM 1009

Query: 806  VVAASSSI 813
            + A   +I
Sbjct: 1010 ISATLLAI 1017


>gi|238788101|ref|ZP_04631896.1| Acriflavine resistance protein B [Yersinia frederiksenii ATCC
           33641]
 gi|238723688|gb|EEQ15333.1| Acriflavine resistance protein B [Yersinia frederiksenii ATCC
           33641]
          Length = 1048

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 67/558 (12%), Positives = 157/558 (28%), Gaps = 41/558 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSSAGTASITLTFQAGTNPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + ++++             + +  +     D +   
Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT  +       N+       G     D+ 
Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQNVVAAIQSQNSQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQAQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +      A L           +          
Sbjct: 276 DYLSRFNGQAASGMSIKLASGANELQTDKLVKARIAELSPFFPHGLEAKIAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++
Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSVFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +++  K            + 
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIKQGHHHAKRGFFGWF 515

Query: 534 IPDCIAIQFMRARFWGVG 551
                +      R     
Sbjct: 516 NRTFDSSARRYERGVAHV 533



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 89/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +   ++++    +++   P 
Sbjct: 260 VTLGDVAKIEMGAEKYDYLSRFNGQAASGMSIKLASGANELQTDKLVKARIAELSPFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               ++FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ +
Sbjct: 380 FAILSVFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029


>gi|167825733|ref|ZP_02457204.1| preprotein translocase subunit SecD [Burkholderia pseudomallei 9]
          Length = 618

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 163/514 (31%), Positives = 267/514 (51%), Gaps = 25/514 (4%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L  A P +L                + LGLDLRGG H +L+VD    +   L   
Sbjct: 98  VVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMTGALTKKLDSD 148

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           + + R+ L+ +GI    + ++   +  +FAD    E     +   +  +           
Sbjct: 149 ASDARTQLRDKGIRDGGVARVDQTVVANFADQDTAEQARKLLASSVSELQWATQPG---- 204

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   ++    +      V   A++Q++  +  R++++G+SE  +Q+ G+ RI+++L
Sbjct: 205 ----GGGYQVVGTFTPAVQKAVEEAALKQNLTTLHNRVNELGVSEPILQQQGNDRIVVEL 260

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           PG QD ++ + ++G TA +      P     N       G       +    L++ +V  
Sbjct: 261 PGVQDTAKAKDIIGRTATLEARLADPLNTHPNPNDPVPPGEELFTQGNQAPVLLKKQVIF 320

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAP 306
           +G  +  A+A FD    +P V+I  D  G R    V+R+NIGKP+A+VL  +    +   
Sbjct: 321 TGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRAVSRENIGKPMAMVLFEKGKGEVLTV 379

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I  G  
Sbjct: 380 ATIQSELGDRFQITGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFH 439

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G V I +FMI  Y  +G+V+   + +N++L +A+LSL+ ATLTLP IA I L +G+
Sbjct: 440 SVIWGFVAIAVFMIAYYMLFGVVSVLGLLVNLLLLVAVLSLMQATLTLPGIAAIALALGM 499

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           A+DSN+L+NERIREE R+  S   ++  G++ A++TI DSN+T LIA + L  FG G VR
Sbjct: 500 AIDSNVLINERIREELRRGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVR 559

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            FAI   L IL SMF+A+   R ++      +K 
Sbjct: 560 AFAIVHCLGILTSMFSAVFFSRGLVNLWYGGRKK 593



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 89/209 (42%), Gaps = 4/209 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q      +  +   +     I     +GP +  + IR G   VI   +A+ +++
Sbjct: 393 TGQPTPQAAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIRMGFHSVIWGFVAIAVFM 452

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              +   F + ++  L++++   +   +L      L  +AA+   +G +++  V++ +R+
Sbjct: 453 IAYY-MLFGVVSVLGLLVNLLLLVAVLSLMQATLTLPGIAAIALALGMAIDSNVLINERI 511

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++      S +  I +         + +++   I+ L +  +G   + +FAI    G
Sbjct: 512 REELR---RGASPQIAIQEGYAHAWATILDSNVTTLIAGLALLAFGSGPVRAFAIVHCLG 568

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I+ +  S++F +  ++   Y  R K   +
Sbjct: 569 ILTSMFSAVFFSRGLVNLWYGGRKKLQSL 597


>gi|33592186|ref|NP_879830.1| preprotein translocase subunit SecF [Bordetella pertussis Tohama I]
 gi|33595817|ref|NP_883460.1| preprotein translocase subunit SecF [Bordetella parapertussis
           12822]
 gi|33600345|ref|NP_887905.1| preprotein translocase subunit SecF [Bordetella bronchiseptica
           RB50]
 gi|33565896|emb|CAE36444.1| protein-export membrane protein [Bordetella parapertussis]
 gi|33567944|emb|CAE31857.1| protein-export membrane protein [Bordetella bronchiseptica RB50]
 gi|33571831|emb|CAE41344.1| protein-export membrane protein [Bordetella pertussis Tohama I]
 gi|332381603|gb|AEE66450.1| preprotein translocase subunit SecF [Bordetella pertussis CS]
          Length = 311

 Score =  204 bits (519), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 88/302 (29%), Positives = 159/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  + T G +  I+F GG  + V   +   
Sbjct: 1   MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEFTGGTVMEVSYAQTAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ + +L   D   QNF   ++ ++RL    G + A     E V   +    P   
Sbjct: 61  LDQVRTAIGTLGYTDFQVQNFGTSRDVMIRLPIAEGQTSATQS--ETVMGALKAADPAVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP+I +EL+  G++ +++  I +++Y+ +RF+W FA+  +   + D+   LGF
Sbjct: 119 LRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKFAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +A VL ++GYSVN+ VV+ DR+R+N + Y    S +++I+ +I +T+ 
Sbjct: 179 FAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRK-ASVQEVINSAITQTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  F++ +  GI     SS+F+AA + +++   R   
Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPTLHYFSLALTIGIWFGIYSSVFVAAALAMWMGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299



 Score = 44.3 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 93/183 (50%), Gaps = 5/183 (2%)

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNV 398
               + +     VG  +G + ++ G  A++  ++ I++++ + +  K+ +    +   +V
Sbjct: 113 ADPAVELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKFAVAGVIANLHDV 172

Query: 399 ILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGF 456
           ++ L   +      +L  +AG++  +G +V+ ++++ +RIRE  RK +  SV   ++   
Sbjct: 173 VIILGFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKASVQEVINSAI 232

Query: 457 SRAYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           ++  S TI     T ++   +LFF GG  +  F++ + + I   +++++ +  A+ +++ 
Sbjct: 233 TQTISRTIITHGSTQMMVLAMLFF-GGPTLHYFSLALTIGIWFGIYSSVFVAAALAMWMG 291

Query: 516 RYK 518
             +
Sbjct: 292 VKR 294


>gi|30249130|ref|NP_841200.1| preprotein translocase subunit SecD [Nitrosomonas europaea ATCC
           19718]
 gi|30180449|emb|CAD85054.1| SecD/SecF/SecDF export membrane proteins [Nitrosomonas europaea
           ATCC 19718]
          Length = 615

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 155/520 (29%), Positives = 292/520 (56%), Gaps = 22/520 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N LP S   ++   +    + LGLDLRGG H +L+VD    +   L  Y+ +LRS
Sbjct: 99  YIVALNLLPNSP--QWMRHIGALPMYLGLDLRGGVHFMLQVDMAGALTKALDRYNADLRS 156

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-QGVNSKLNVDPKKNLLVTT 138
            L+++ I    + + +++I + F D + +E    ++            +V+ ++ L+ + 
Sbjct: 157 TLREQRIPSAGIDRDRSRIIIKFRDEQAREKAISELGKTFEDLAFRSEDVNGERRLVASI 216

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
             + +  +          + A+++++  +R R++++G++E  IQ+ G+ R+++QLPG QD
Sbjct: 217 KPEALIRM---------QNTAVQRNITTLRNRVNELGVAEPIIQQAGADRVIVQLPGVQD 267

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-----RDSDGNQYLVEDKVEISGIH 253
            ++ + +LG TA +    V  +      + G          +  G   LV+ +V ++G  
Sbjct: 268 TAKAKDILGRTATLEVRMVDEDGDIDAALRGSVPSGTELLSERGGGHLLVKKQVLLTGDR 327

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT----APVIN 309
           +  A   FD    +  V ++ D  G+R F ++TR+N+GK +A++L  + +T    APVI 
Sbjct: 328 ITDAQPGFDQDR-QAAVHVTLDNNGSRIFKQLTRNNVGKRMAILLVEKNVTEVVTAPVIR 386

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           + I  G+ QISG      A  +A +LRAG+L   + I+EER VG  LG+++I +G  + +
Sbjct: 387 EEIGGGRVQISGQMNSIEARDVALLLRAGALAAPMEIIEERTVGPSLGAENIERGFNSTL 446

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
            G +++ +F+++ Y   G+++  ++  N++  + LLS+L ATLTLP +AG+ L +G+A+D
Sbjct: 447 YGFLIVSVFIMIYYSAIGVISVVALATNLLFLIGLLSILQATLTLPGMAGMALTVGMAID 506

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +N+L+NERIR+E R   +   ++  G+ RA+  I D+N+T L+A + L  FG G ++GFA
Sbjct: 507 ANVLINERIRDELRHGATPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMMFGSGPIKGFA 566

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + + L IL ++F+A+++ RAM+      +K+  + I  + 
Sbjct: 567 VVLCLGILTTLFSAVTVSRAMVNLFYGNRKLTHVPIGAIK 606



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 81/207 (39%), Gaps = 4/207 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G   +       +  +   +     I     VGP +  E I +G    +   + + 
Sbjct: 394 VQISGQMNSIEARDVALLLRAGALAAPMEIIEERTVGPSLGAENIERGFNSTLYGFLIVS 453

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           ++I I +     + ++  L  ++   +G  ++      L  +A +   +G +++  V++ 
Sbjct: 454 VFIMIYYS-AIGVISVVALATNLLFLIGLLSILQATLTLPGMAGMALTVGMAIDANVLIN 512

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      + +  I           + T++   ++ L + ++G   I  FA+ +
Sbjct: 513 ERIRDELR---HGATPQAAIHAGYERAWDAIIDTNLTTLLAGLGLMMFGSGPIKGFAVVL 569

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRA 828
             GI+    S++ ++  ++   Y  R 
Sbjct: 570 CLGILTTLFSAVTVSRAMVNLFYGNRK 596



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 36/118 (30%), Gaps = 25/118 (21%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I+ ++   +GLL  LPNF  +S   +               LR G    +   
Sbjct: 3   RYPLWKYIVIAVSILLGLLYTLPNFFGESPAVQISP------------LRAGIQTDM--- 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                              LK+ G+           I + F+D+  +    D +   +
Sbjct: 48  ----------ALLQRAEQVLKQHGLPYNGTILESTGIKIRFSDTDTQIKARDILDAEV 95


>gi|163857963|ref|YP_001632261.1| preprotein translocase subunit SecF [Bordetella petrii DSM 12804]
 gi|163261691|emb|CAP43993.1| secF [Bordetella petrii]
          Length = 310

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 86/302 (28%), Positives = 156/302 (51%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  + T G +  I+F GG  + V   +   
Sbjct: 1   MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEFTGGTVMEVNYAQTAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VRS +  L   D   QNF    + ++RL    G + A     + V   +      + 
Sbjct: 61  LDSVRSAVSKLGYTDFQVQNFGTSHDVMIRLPLTEGQTSAAQS--DAVMGALKAADSTAE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL+  G++ ++   I +++Y+ +RF+W FA+  +   + D+   LGF
Sbjct: 119 LRRVEFVGPQVGQELLHNGLMALLFVVIGIMVYLGMRFEWKFAVAGVIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +A VL ++GYSVN+ VV+ DR+R+N +      S +++I+ +I +T+ 
Sbjct: 179 FAFFQWEFSLSVLAGVLAVLGYSVNESVVIMDRIRENFRKQRK-ASVQEIINSAITQTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI     SS+F+AA + +++   R   
Sbjct: 238 RTIITHGSTQMMVLAMLFFGGPSLHYFALALTIGIWFGIYSSVFVAAALAMWMGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|146284251|ref|YP_001174404.1| multidrug/solvent RND transporter TtgB [Pseudomonas stutzeri A1501]
 gi|145572456|gb|ABP81562.1| multidrug/solvent RND transporter TtgB [Pseudomonas stutzeri A1501]
          Length = 1045

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 69/547 (12%), Positives = 156/547 (28%), Gaps = 38/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLAGALSIL-----TLPVNQYPSIAPPAV---------GISVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +     + +IT++F      +    +V   LQ 
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDGLRYISSASNSDGSMEITVTFDQGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      +++             + +  I+    D I  ++   
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVRNFLIIIGLVSTDGRLDQRDLANYIVANMQDPISRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFSLTPVDVSAAIQAQNVQVSSGQLGGLPALPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +                 +    +        +        +           
Sbjct: 233 TVIGKTRL-------------QTPEQFRNILLKVNSDGSQVRLGDVAKVELGGENYSVSA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T+E        L+    P    +           S + 
Sbjct: 280 HFNGKPAAGLALKLATGANALDTVEGVRKTIDELKPFFPPGVEVVYPYDTTPVISASITG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  LV   ++ + ++ T  +L++ G ++   ++  ++
Sbjct: 340 VMQTLLEAFVLVFLVMYLFLQNFRATLVPTLAVPVVLLGTFGVLAVFGFSINTLTMFAMI 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMREEGLSPLEATRKSMGQIQGALIGIGVVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++++S+  A+    A+   +     +K ID             
Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVLVALIFTPALCATL-----LKPIDKGEHHEKGGFFGW 514

Query: 538 IAIQFMR 544
               F R
Sbjct: 515 FNRTFDR 521



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   +S          L        +++     +     ++    
Sbjct: 258 SQVRLGDVAKVELGGENYSVSAHFNGKPAAGLALKLATGANALDTVEGVRKTIDELKPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I   +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PPGVEVVYPYDTTPVISASITGVMQTLLEAFVLVFLVMYLFLQNFRATLVPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A+FG   N   + A++  IG  V+D +VV + +     +    +S  +   KS+
Sbjct: 378 GTFGVLAVFGFSINTLTMFAMILAIGLLVDDAIVVVENV--ERVMREEGLSPLEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +   +     +LPMA +GGS       F+I +   +V++   ++     +   
Sbjct: 436 GQIQGALIGIGVVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMVLSVLVALIFTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 72/193 (37%), Gaps = 8/193 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            + + +       L         G      L     + +  +S + + + +   ++ W   
Sbjct: 837  DAMAEVERIAAQLPPGVGYSWTGQSYEERLAGSQTLALYALSLLVVFLCLAALYESWSIP 896

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L I   L F    G+   +     ++T IG S  + +++ +  +    L+  
Sbjct: 897  FSVMLVVPLGIVGALAFTLARGLSNEVFFQVGLVTTIGLSARNAILIVEFAK---ALHEQ 953

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
             +S+ D   ++    L   + TS+A  + V+P+A+    G     +    +  G++ AA 
Sbjct: 954  GMSYADAALRACRMRLRPIIMTSLAFILGVVPLAIASGAGAGSKHAIGTGVIGGMLTAAV 1013

Query: 811  SSIFIAAPILLFI 823
             +IF      + I
Sbjct: 1014 LAIFWIPLFYVMI 1026


>gi|118602967|ref|YP_904182.1| protein translocase subunit secF [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567906|gb|ABL02711.1| protein translocase subunit secF [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 308

 Score =  204 bits (518), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 102/293 (34%), Positives = 164/293 (55%), Gaps = 7/293 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           +   I F+  R + V  S+L    SI  L  +G   GIDF GG  + V   + VDLS +R
Sbjct: 7   NIPTIDFIGKRTYAVIFSVLLVTASIVSLTMNGFKLGIDFTGGTLIEVGYQQDVDLSEIR 66

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L        + Q F      L+ L+ Q   S   +  +  +      +     I+  E
Sbjct: 67  AMLAKANFKGANVQYFGSINEVLIHLEPQSISSAKLSSKIIHL------LGDDVNIRRIE 120

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGPK+  EL   G + ++ + I +LIY+ IRF++ F+LG+I TLI D+   LGFF+LF 
Sbjct: 121 FVGPKVGDELTNDGGLAMLYALIGILIYVTIRFEYRFSLGSIATLIHDVIIILGFFSLFQ 180

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IEF+LT +AA+L +IGYS+ND +VV+DR+R+N        S + +I+ ++N+TL R++ T
Sbjct: 181 IEFDLTVLAAILAVIGYSLNDTIVVFDRIRENFLSTRYVDSPK-IINDALNQTLSRTIMT 239

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S+   + +L +   GG +I +FA+ +  G+VV   SSI++A+ I+L +   + 
Sbjct: 240 SLTTLLVLLALFFLGGEIIHNFALVLLIGVVVGTYSSIYVASSIILALGITKE 292


>gi|119509588|ref|ZP_01628735.1| protein export protein SecF [Nodularia spumigena CCY9414]
 gi|119465777|gb|EAW46667.1| protein export protein SecF [Nodularia spumigena CCY9414]
          Length = 325

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 78/250 (31%), Positives = 138/250 (55%), Gaps = 10/250 (4%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             ++P+D++ VR   ++  +GD S Q         + ++ +  D   +T +   + +KI 
Sbjct: 63  NCDQPIDINTVREVAQAQGLGDSSIQIVGENG---ISIRSKDLDVDQRTNLQTALTEKIG 119

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
              P       + VGP +  EL R GI+ +I+S   ++IY+  RF+  +AL AI  L  D
Sbjct: 120 TFDP--QKNQIDTVGPTLGAELFRSGIIALIVSFAGIIIYLTFRFQLDYALFAIVALFHD 177

Query: 704 ITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +  TLG F++FG+    E +   + ++LT+IG+SVND VV+YDR+R+ +K+        D
Sbjct: 178 VLVTLGVFSIFGLVLGTEVDSLFIVSLLTIIGFSVNDTVVIYDRIRETIKVNPER-PIAD 236

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++D ++N+TLGRS+ TS+   + +  +   GG  + +FA+ +  G    A SS+FIA+ +
Sbjct: 237 IVDDAVNQTLGRSINTSLTTMLPLFAIYFLGGETLKNFALALIIGFTAGAYSSLFIASTL 296

Query: 820 LLFIYDWRAK 829
           L +  +   K
Sbjct: 297 LAWWRERTGK 306


>gi|170761742|ref|YP_001788382.1| preprotein translocase subunit SecF [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408731|gb|ACA57142.1| protein-export membrane protein SecF [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 287

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 147/287 (51%), Gaps = 8/287 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS++  +  +  L   GLNYGIDFKGG  + +   +      V   ++     
Sbjct: 7   KTKIWFSISLIIILTGMFFLMKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ +      N  + ++          ++   VK K         + + + +GP + +E
Sbjct: 67  SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L RK ++ +II+ IAMLIY+ IRF++ F L AI  L+ DI  T+  +A+F +  + + +A
Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFKFGLAAILGLVHDILITVSIYAIFKLPVSSSFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           AVLT++GYS+ND +V++DR+R+N K         ++ + SI +T+ RS+ T +    +++
Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANISITQTMSRSINTVLTTLFTIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + V+    I  FA P+  GI+    SSIFI++P+ +     +  N 
Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKSKLANK 285


>gi|302038578|ref|YP_003798900.1| protein-export membrane protein SecF [Candidatus Nitrospira
           defluvii]
 gi|300606642|emb|CBK42975.1| Protein-export membrane protein SecF [Candidatus Nitrospira
           defluvii]
          Length = 305

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 79/289 (27%), Positives = 140/289 (48%), Gaps = 5/289 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSVV 594
             I FM  R     IS + +   +  +        N GIDF GG  + +   + + +   
Sbjct: 8   TNIDFMGKRSITFVISGILAFLGLIAVLQIARGAANLGIDFAGGTAVQLKFEQAMKIDEA 67

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R  LE+  +G    Q F  +   L+R++            +  V  K           + 
Sbjct: 68  RRALENNGLGSAELQEFTQDNKLLIRVKASTTIEEKVAERVMAVFSKEFPANKFVVDSSM 127

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E +GP I ++L    ++ V+IS + +++YI +RF+  F + A      D+   LG F L 
Sbjct: 128 E-IGPTIGKKLQEDAMIAVLISFVGIVLYIAVRFELRFGVAAALATFHDVLAVLGVFYLL 186

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             E  L  + A+LTL GYS+ D VVV+DR+R+N++          +I+++IN+ L R++ 
Sbjct: 187 DKEITLLVITALLTLAGYSLTDTVVVFDRIRENLRT-RRREDEETIINQAINQVLSRTIV 245

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           TS+   I ++P+ + G  V+  F++ +  G++    SS+F+A+P+LL  
Sbjct: 246 TSLTVVIVLIPLVLAGAEVLHDFSLALLGGVMFGTYSSVFVASPLLLLW 294


>gi|325981737|ref|YP_004294139.1| protein-export membrane protein SecF [Nitrosomonas sp. AL212]
 gi|325531256|gb|ADZ25977.1| protein-export membrane protein SecF [Nitrosomonas sp. AL212]
          Length = 312

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 168/298 (56%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM+ R  G  ISI+  I ++  + T GLN G+DF GG  L +  ++  D
Sbjct: 1   MELFRFQHNIPFMKWRRVGAVISIVTFILAVFFISTKGLNLGVDFTGGTVLEIGYSQTAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  L  L++ D S Q+F   +  L+RL  +P  S AQ  + E+V   + E+     
Sbjct: 61  LEKIRGVLTGLEMSDASVQSFGTSREVLIRLPIKPEFSSAQ--LSEIVLNALREVDSSVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL+  G + ++  ++ ++ Y+ +RF+W F +  I   + D+   LGF
Sbjct: 119 MRRVEFVGPQVGQELLENGALALLFVSLGIVAYLAVRFEWKFGVAGIVANLHDVIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+LT +AAVL ++GYSVN+ VV++DR+R+N +      S   +ID +I +T+ 
Sbjct: 179 FAFFQWEFSLTVLAAVLAILGYSVNESVVIFDRIRENFRKLRK-ASVTQVIDGAITQTMS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++ T  +  + V+ + ++GG V+  F++ +  GI+    SSI + + I++ +   R 
Sbjct: 238 RTIITHGSTQMVVIAILIFGGEVLYYFSLALTIGILFGIYSSIMVGSSIIVLLGAKRE 295


>gi|258590881|emb|CBE67176.1| Protein-export membrane protein secD [NC10 bacterium 'Dutch
           sediment']
          Length = 515

 Score =  204 bits (518), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 186/526 (35%), Positives = 285/526 (54%), Gaps = 27/526 (5%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAM--PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
            I      P    +S L      +     R++LGLDL+GG HLVLEV  +  V   +   
Sbjct: 1   MIAGYYLFPTLSGRSSLPSLLPPLLPRAERLNLGLDLQGGMHLVLEVVAEKAVENTIDRL 60

Query: 74  SDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             ELR    K  I V  M +   ++I +    +   E +   +  +              
Sbjct: 61  IAELRRETDKANILVEQMTREGIDRIRIKLQATEGLEGVRRILKNYSNL----------- 109

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
                +   E+ + L+   + ++   A+ QS+E IR RIDQ G++E  I + G  RI++Q
Sbjct: 110 QESGGSGPTELILSLASGEMKRMQESAVRQSLETIRNRIDQFGVAEPHIVQEGDRRIVVQ 169

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------------DGN 239
           LPG ++P R   L+G TA + F  V  + +    + G     D              +  
Sbjct: 170 LPGIKEPQRAINLIGKTALLEFKLVAEDANLAEAVAGRISENDQLLYLRSTDEQQKMNKV 229

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             +V+ +  ++G  L  A    D +T++PVV I FD+ G R F E T  N+G+ LA+VLD
Sbjct: 230 PIVVQKRAVLTGDLLTSAQVQIDSQTNQPVVSIEFDQEGTRLFGEATAANVGRRLAIVLD 289

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             + +APVI + IP GKAQISG+FT+E A  LA +LRAG+LP  +NI+    VG  LG D
Sbjct: 290 DTIYSAPVIREKIPGGKAQISGSFTMEDARDLAIVLRAGALPAPVNIISNLTVGPSLGLD 349

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           SI KG  A + G  L++ FM + Y   G++A+ ++ LN+I  +  L+ L ATLTLP IAG
Sbjct: 350 SIQKGVQAAILGGALVIAFMAIYYKLSGVIANLALVLNLIWLVGALASLRATLTLPGIAG 409

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I+LGIG+AVDSN+L+ ERIREE R  + V  +++ G+ +A+ TI DS++T LI    LF 
Sbjct: 410 IILGIGMAVDSNVLILERIREELRSGKPVRSAIEGGYDKAFLTIIDSHVTTLITACALFL 469

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FG G V+GFA+T+ L ++ ++ TA++  R +  ++ +   +K++ I
Sbjct: 470 FGTGPVKGFAVTLSLGVIFNLVTALTGTRVVYDWMTQRWNLKTLSI 515



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 81/181 (44%), Gaps = 5/181 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +   VGP +  + I+KG+   I+    ++ ++ I +K    + A   L+L++   +G  A
Sbjct: 338 SNLTVGPSLGLDSIQKGVQAAILGGALVIAFMAIYYKLS-GVIANLALVLNLIWLVGALA 396

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                  L  +A ++  IG +V+  V++ +R+R+ ++   +    R  I+   ++     
Sbjct: 397 SLRATLTLPGIAGIILGIGMAVDSNVLILERIREELR---SGKPVRSAIEGGYDKAFLTI 453

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + + +   I+   + ++G   +  FA+ ++ G++    +++     ++      R     
Sbjct: 454 IDSHVTTLITACALFLFGTGPVKGFAVTLSLGVIFNLVTAL-TGTRVVYDWMTQRWNLKT 512

Query: 833 I 833
           +
Sbjct: 513 L 513


>gi|301154787|emb|CBW14250.1| SecYEG protein translocase auxillary subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 605

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 149/524 (28%), Positives = 280/524 (53%), Gaps = 39/524 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P+ +     N +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE I
Sbjct: 93  NLAPATPAWLSSIGANPMKWGLDLRGGVRFLMEVDMNSALAKRQEQLQDTLRNELRKEKI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              +++       T++  ++      A  +                   +    +  +++
Sbjct: 153 QFTAIKNGDKFGTTVTLENADQMSKAARIIRQL-----------HPTLDVSDIGDNTLNL 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            LS+ ++ +  + AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++
Sbjct: 202 ALSEASLTESRNLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    + +    G+         D  G    +  +  + G H+  +++ 
Sbjct: 262 LGATATLEFRIVNSLVNPESAARGMLPSDTEIKYDRQGRPVALYKRAVLGGEHIINSSSG 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP-------------- 306
            D  T  P V ++ D  G     + T+    KP+A +                       
Sbjct: 322 LDQNTSTPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKSEE 381

Query: 307 ----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q   S   QI+G  +   A  L+ +L++G+L   + IVEER +G  LG+ ++ 
Sbjct: 382 VINVATIQGRFSSNFQITGVSSSAEAQNLSMLLKSGALIAPVQIVEERTIGPSLGAQNVE 441

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A   GL+ +++FM+V Y  +G++A F++ +N++L + L+S+L  ATLT+P IAGIV
Sbjct: 442 QGIDASFWGLIAVIVFMLVYYKVFGIIASFALVINIVLLVGLMSILPGATLTMPGIAGIV 501

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G++VD+N+L+ ERI+EE R  + +  +++ G++ A+++IFD+N+T ++  ++L+  G
Sbjct: 502 LTLGMSVDANVLIFERIKEEIRNGRPIQQAINEGYNGAFTSIFDANLTTILTAIILYAVG 561

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G ++GFA+T+ L + ISMFTAI+  RA++ F+   K+++ + I
Sbjct: 562 TGPIQGFAVTLALGVAISMFTAITGTRAIVNFLYGGKRLEKLSI 605



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +GI       IA+++++ + +K  F + A   L+++I   +G  ++  
Sbjct: 430 TIGPSLGAQNVEQGIDASFWGLIAVIVFMLVYYKV-FGIIASFALVINIVLLVGLMSILP 488

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    +  +A ++  +G SV+  V++++R+++ ++        +  I++  N        
Sbjct: 489 GATLTMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRPIQQAINEGYNGAFTSIFD 545

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   I  FA+ +A G+ ++  ++I     I+ F+Y  +    
Sbjct: 546 ANLTTILTAIILYAVGTGPIQGFAVTLALGVAISMFTAITGTRAIVNFLYGGKRLEK 602


>gi|157144599|ref|YP_001451918.1| aminoglycoside/multidrug efflux system [Citrobacter koseri ATCC
           BAA-895]
 gi|157081804|gb|ABV11482.1| hypothetical protein CKO_00319 [Citrobacter koseri ATCC BAA-895]
          Length = 1037

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  L        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATVTLSFVAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSYQMTAKDVTDAIESQNAQIAVGQLGGTPSVDRQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVKLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           V          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMETAKLVLNRLDELAEYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L     ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFDYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLHKGEHHGQKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L     +  L         + +G     V
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGAMVVLFLRLPTSFLPQEDRGMFITSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++ ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVQEVEKYYFTQEKDNVMSVFSTVGSGPGGNGQNVARMFVRLKDWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    +  
Sbjct: 636 RNATTGTSFAIIERATKAFNKIKEARVYA 664



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +   +++     ++ E  P 
Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMETAKLVLNRLDELAEYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 F    N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FSVLYAFDYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        D    +  + L   + TS+A    VLPMA+    
Sbjct: 936  SAKNAILIVEFANE---MNEKGHDLLDATLHACRQRLRPILMTSLAFIFGVLPMAISNGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        +
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPK 1035


>gi|312897347|ref|ZP_07756773.1| protein-export membrane protein SecF [Megasphaera micronuciformis
           F0359]
 gi|310621565|gb|EFQ05099.1| protein-export membrane protein SecF [Megasphaera micronuciformis
           F0359]
          Length = 311

 Score =  204 bits (518), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 76/297 (25%), Positives = 149/297 (50%), Gaps = 1/297 (0%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +    ++ R W   +S L  + SI  +  +G N+GID+ GG  L +   + V +S VR  
Sbjct: 1   MKFSIVKHRKWWFTLSTLLVVASIVSIVMNGFNFGIDYTGGTILDLRFGKAVTVSEVRQV 60

Query: 598 LESLQIG-DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           L++  +  D S     G                  +   + +  K +  +  S ++ TE 
Sbjct: 61  LDTSGMNLDNSVIQLTGVTEGDSSQDVMIRMRNLSSDETKALADKFSAQLGNSEVKRTES 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  I  E+ +  +  + ++ IA+  YI  RF++  A+ AI +++ D+   LG F+ F +
Sbjct: 121 VGAVIGAEVTKNAVTSLAVAFIALAAYISFRFEYKIAVSAIVSILHDLIMVLGVFSFFRL 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           E + + +AA+LT++GYS+N+ VV++DR+R+N++ +  + ++  L + SI +++ RS+YT 
Sbjct: 181 EIDASFLAAILTVVGYSMNEAVVIFDRVRENIRTHRRTDTYECLAEDSIAQSIHRSIYTL 240

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               ++   +  +GG    +F++ M  G +  A SSI +   + +       K   +
Sbjct: 241 TTVLLACGSLHFFGGESTKNFSLVMLIGFISGAYSSICVDTSLWVVWKSRTDKRRGL 297


>gi|300922171|ref|ZP_07138308.1| putative ATP synthase F0, A subunit [Escherichia coli MS 182-1]
 gi|300421486|gb|EFK04797.1| putative ATP synthase F0, A subunit [Escherichia coli MS 182-1]
          Length = 1037

 Score =  204 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGPTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 87/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG        F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGPTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|124514657|gb|EAY56169.1| SecD export membrane protein [Leptospirillum rubarum]
          Length = 524

 Score =  204 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 171/513 (33%), Positives = 272/513 (53%), Gaps = 35/513 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           + + +     +P  +ISLGLDL+GG  + L+VD +  V+G LQ  +              
Sbjct: 31  KDLPEGLRKVLPSGKISLGLDLKGGMSVTLQVDREKAVDGTLQEIAT-------AMKTPA 83

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
                    I              + +   +      L        + ++    ++  LS
Sbjct: 84  MQPSIQGATIHFPVPKGEQ----RETIKKRIARHYPYL-------TISSSDASGVTFSLS 132

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                ++ +HA+ Q+ME+IR RIDQ G++E  I+R G  RIL++LPG  DP R   L+G 
Sbjct: 133 PAEQKRIRTHAMTQAMEVIRNRIDQFGVAEPLIERQGKDRILVELPGINDPERAMSLIGR 192

Query: 209 TAKMSFHKVLPNNSKKGFMFG----------------VRFLRDSDGNQYLVEDKVEISGI 252
           TA++ F  V   N     +                             YL+     +SG 
Sbjct: 193 TARLQFLLVDDKNPDADKILEKKAPVPSADEILFSHRTDANGQRIELPYLLVRGALMSGD 252

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
            ++ A   F     +P V ++F+  GA+ F  +TR+++ + LA+VLD  V +APVI + I
Sbjct: 253 LISDARVAFGQFN-EPYVSLTFNSAGAKLFDTITREHVKERLAIVLDNVVYSAPVIQEEI 311

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
             G+AQI+GNFT++ A  L+ +LR+G+LP  ++I++   VG  LG DSI  G  A +   
Sbjct: 312 AGGQAQITGNFTLKEAKDLSIVLRSGALPAPVHILQNVTVGPSLGKDSIRAGIRATIFAG 371

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           +L++LFM V Y   G++AD ++ LN+IL +  ++ L ATLTLP IAGI+L IG+ VDSN+
Sbjct: 372 ILVLLFMAVYYRLSGMIADGALVLNLILLVGAMAALHATLTLPGIAGIILTIGMGVDSNV 431

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+ ERIREE R  + V  ++D G+ +A+ TI DS++T LI  ++LF FG G ++GFA+T+
Sbjct: 432 LIFERIREELRLGKPVRSAIDSGYDKAFLTIVDSHVTTLITALILFIFGTGPIKGFAVTL 491

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            + I I++FTA+   R +   +   KK+  + I
Sbjct: 492 SVGIAINLFTALVGTRVVFDAMTARKKLDRLSI 524



 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 87/184 (47%), Gaps = 5/184 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I     VGP + ++ IR GI   I + I +L+++ + ++    + A   L+L++   +G
Sbjct: 344 HILQNVTVGPSLGKDSIRAGIRATIFAGILVLLFMAVYYRLS-GMIADGALVLNLILLVG 402

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             A       L  +A ++  IG  V+  V++++R+R+ ++L       R  ID   ++  
Sbjct: 403 AMAALHATLTLPGIAGIILTIGMGVDSNVLIFERIREELRL---GKPVRSAIDSGYDKAF 459

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              V + +   I+ L + ++G   I  FA+ ++ GI +   +++ +   ++      R K
Sbjct: 460 LTIVDSHVTTLITALILFIFGTGPIKGFAVTLSVGIAINLFTAL-VGTRVVFDAMTARKK 518

Query: 830 NARI 833
             R+
Sbjct: 519 LDRL 522


>gi|333002254|gb|EGK21818.1| inner membrane protein [Shigella flexneri K-272]
 gi|333016076|gb|EGK35408.1| inner membrane protein [Shigella flexneri K-227]
          Length = 1037

 Score =  204 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVIYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + I++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVIYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATRMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|56476206|ref|YP_157795.1| preprotein translocase subunit SecF [Aromatoleum aromaticum EbN1]
 gi|56312249|emb|CAI06894.1| probable-export membrane transmembrane protein [Aromatoleum
           aromaticum EbN1]
          Length = 310

 Score =  204 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 159/302 (52%), Gaps = 2/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  L T GL+  ++F GG  + V      +
Sbjct: 1   MEFFRIKKDIPFMRHALTFNIISLITFLLAVFFLATSGLHLSVEFTGGTLVEVTYPEAPE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  L      D   QNF   ++ L+RL  +     A+   L  +    +   P   
Sbjct: 61  LEPIREALGDAGYPDAQVQNFGSARDVLIRLPNRDDLDTARVSEL-TLATLQSVAGPTPE 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL   G + +++    +++Y+ IRF+W FA+ AI   + D+   LGF
Sbjct: 120 LRRVEFVGPQVGKELATDGAMALLLVIFGIVVYLAIRFEWRFAVSAIIANLHDVIIILGF 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AAVL ++GYSVN+ VVV+DR+R+  K    ++S   ++D +I  T+ 
Sbjct: 180 FAFFQWEFSLPVLAAVLAVLGYSVNESVVVFDRVRETFKK-RRNLSTPQVLDHAITSTIS 238

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R+V T  +  I VL M ++GG+ +  FA+ +  GI+    SS+ +A+P+++++   R + 
Sbjct: 239 RTVITHGSTQIMVLSMLLFGGATLHYFAMALTIGILFGIYSSVLVASPLVMWLGVSREQF 298

Query: 831 AR 832
            +
Sbjct: 299 VK 300


>gi|239617984|ref|YP_002941306.1| protein-export membrane protein SecF [Kosmotoga olearia TBF 19.5.1]
 gi|239506815|gb|ACR80302.1| protein-export membrane protein SecF [Kosmotoga olearia TBF 19.5.1]
          Length = 304

 Score =  204 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 160/305 (52%), Gaps = 9/305 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL---- 591
                 F+  R   + +S++    ++ ++FT G N G+DF GGI++ V  +         
Sbjct: 1   MRYNFDFVGKRKGFLTLSLVLVALTLVMVFTKGFNLGVDFTGGIEISVTVSDLEMSVGEM 60

Query: 592 ----SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               S V    ES +I        +G  + L R          Q    +++K   ++ V 
Sbjct: 61  RGLLSSVNPIFESARIIKQKPLTQEGSSDQLARFSIVVNSENEQGLKEDIIKALTSKGVK 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            S I +   +    ++E+       VI++   +L+YI IRF++ F +GAI  L+ DI  T
Sbjct: 121 SSNILSVNRISGFAAQEIKGYAWTAVIVAVALILLYITIRFRFSFGIGAIIALVHDILIT 180

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LGF+++FGIE N   VAA+LTL+GYS+ND +VVYDR+R+N++      S  +++++SINE
Sbjct: 181 LGFYSIFGIEINAPVVAALLTLLGYSLNDTIVVYDRVRENLRKL-RGKSIEEIVNRSINE 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + RS+ TS+  F +VL + ++ G V+  FA  +  G+VV   SS+ IAAP+++      
Sbjct: 240 VIVRSLNTSLTTFTAVLMLFIFSGEVLRPFAFGIMVGVVVGTYSSLHIAAPVVITWLGRS 299

Query: 828 AKNAR 832
               +
Sbjct: 300 KVKIK 304


>gi|126668569|ref|ZP_01739523.1| protein export protein SecD [Marinobacter sp. ELB17]
 gi|126626974|gb|EAZ97617.1| protein export protein SecD [Marinobacter sp. ELB17]
          Length = 624

 Score =  204 bits (517), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 155/522 (29%), Positives = 271/522 (51%), Gaps = 37/522 (7%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
               P  +       + LGLDLRGG H +LEVD +  V+  ++  S +++  L++E I  
Sbjct: 107 AASTPGWLRSLGAGPMKLGLDLRGGVHFLLEVDMETAVSQRMEALSGQIKRELREERIRY 166

Query: 89  FSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
                  ++ I LSF D   +      +                        E+ I++ L
Sbjct: 167 RGGELEGDREIILSFRDDESRAEAFTLIRRQYLQFLMD--------ERTRGDERLIALTL 218

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           S   +  +  +++EQ++  IR R++++G++E  +QR GS RI+++LPG QD ++ +++LG
Sbjct: 219 SDAEVRSIQEYSLEQNLTTIRNRVNELGVAEPLVQRQGSSRIIVELPGVQDTAQAKRVLG 278

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
            TA + F                   RD+      +E ++  +G ++  A   FD    +
Sbjct: 279 ATANLEFRMEA-RPDTPAGSIEAFGFRDTPERTARLERELIATGNNVANAQQQFDENG-Q 336

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV-------------------- 307
           P V I+ D +G       TR+ +G+ +AV+                              
Sbjct: 337 PQVSITMDSVGGDLMNRATRNAVGRRMAVLFIEFRTETENRMVDGEVVTEEKRVVDKGII 396

Query: 308 ---INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                Q+      +I+G  +I  A  LA +LRAG+L   +  V+ER +G  LG  +I  G
Sbjct: 397 SLATVQSALGASFRITGLDSIPEASELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAG 456

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             +++ G VL++++M + Y  +GL+A+ S+ LN++L +A +S+L ATLTLP IAGIVL +
Sbjct: 457 MMSVLLGFVLVLIYMALYYRGFGLIANVSLTLNLMLLIACMSILSATLTLPGIAGIVLTV 516

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+ ERIREE +   +   +++ G+SRA+ +IFD+NIT L+  ++LF  G G 
Sbjct: 517 GMAVDANVLIFERIREELKAGTAPQLAINAGYSRAFVSIFDANITTLLVALILFAMGSGP 576

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           V+GFAIT+ L I+ SMF+ + + R+++  +   ++++ + I 
Sbjct: 577 VKGFAITLSLGIMTSMFSGLLVSRSIVNVVYGGRRVEKLSIG 618



 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 104/276 (37%), Gaps = 4/276 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI        L+     N        + +         +       E  ++ D    +  
Sbjct: 340 SITMDSVGGDLMNRATRNAVGRRMAVLFIEFRTETENRMVDGEVVTEEKRVVDKGIISLA 399

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             ++ L       G           +  +   +           +GP + ++ I  G++ 
Sbjct: 400 TVQSALGASFRITGLDSIPEASELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMMS 459

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V++  + +LIY+ + ++  F L A  +L L++   +   ++      L  +A ++  +G 
Sbjct: 460 VLLGFVLVLIYMALYYR-GFGLIANVSLTLNLMLLIACMSILSATLTLPGIAGIVLTVGM 518

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +V+  V++++R+R+ +K      + +  I+   +         ++   +  L +   G  
Sbjct: 519 AVDANVLIFERIREELKA---GTAPQLAINAGYSRAFVSIFDANITTLLVALILFAMGSG 575

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  FAI ++ GI+ +  S + ++  I+  +Y  R 
Sbjct: 576 PVKGFAITLSLGIMTSMFSGLLVSRSIVNVVYGGRR 611



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 53/526 (10%), Positives = 130/526 (24%), Gaps = 38/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++  +   IG + ALPN  P                           +     
Sbjct: 4   KYPLWKNLIILVALAIGFIYALPNLFPDDFA---------------------VQVTGARS 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
             +     L+     L S      +   S++     I ++      +      V   L  
Sbjct: 43  STEVDARVLERAVQALESQ--GIEVKSSSLQDRDALIRVT--SGEDQLQARPAVQAILGN 98

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174
                LN+       + +       +            +  +  A+ Q ME +  +I + 
Sbjct: 99  DYLVALNMAASTPGWLRSLGAGPMKLGLDLRGGVHFLLEVDMETAVSQRMEALSGQIKRE 158

Query: 175 GISESTIQR--LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
              E    R         I L    D SR         +     +         +  +  
Sbjct: 159 LREERIRYRGGELEGDREIILSFRDDESRAEAFTLIRRQYLQFLMDERTRGDERLIALTL 218

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                 +      +  ++ I              +                      +  
Sbjct: 219 SDAEVRSIQEYSLEQNLTTIRNRVNELGVAEPLVQRQGSSRIIVELPGVQDTAQAKRVLG 278

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL----AAMLRAGSLPIKLNIVE 348
             A +             +I +   + +   T      L      +  A     +    +
Sbjct: 279 ATANLEFRMEARPDTPAGSIEAFGFRDTPERTARLERELIATGNNVANAQQQFDENGQPQ 338

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                  +G D + + T   V   + ++        +  +V    +     +    +  L
Sbjct: 339 VSITMDSVGGDLMNRATRNAVGRRMAVLFIEFRTETENRMVDGEVVTEEKRVVDKGIISL 398

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
               +    +  + G+    +++ L                    +G S     I    +
Sbjct: 399 ATVQSALGASFRITGLDSIPEASELALLLRAGALAAPMYFVQERTIGPSLGQKNIDAGMM 458

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + L+  V++  +     RGF +   +S+ +++   I+ +  +   +
Sbjct: 459 SVLLGFVLVLIYMALYYRGFGLIANVSLTLNLMLLIACMSILSATL 504


>gi|322513988|ref|ZP_08067063.1| protein-export membrane protein SecD [Actinobacillus ureae ATCC
           25976]
 gi|322120214|gb|EFX92172.1| protein-export membrane protein SecD [Actinobacillus ureae ATCC
           25976]
          Length = 604

 Score =  204 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 166/523 (31%), Positives = 278/523 (53%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    PS +     + +  GLDLRGG   ++EVD +  +    +   D LRS L+KE +
Sbjct: 93  NLAPATPSWLTDIGGSPMKRGLDLRGGVRFLMEVDMNTALTKQQESLQDSLRSELRKEKL 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N    + FAD+   E  A  V      + +                  +S 
Sbjct: 153 QYKAVKKGENFATVIEFADADTAEKAARFVRRQHTSLEASF-----------IDTTTVSF 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S   +      AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 202 APSAEGLSASRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    S +    G+           DG   ++  K  + G H+     +
Sbjct: 262 LGATATLEFRLVNAKASPESAARGIVPADSELKFSRDGGAVVLRRKPSLGGEHIID-ATS 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G     E+T+  +GKP+A +                       
Sbjct: 321 GKDERGLPQVSINLDAEGGHMMAEITKSAVGKPMATLYSEFKDSGRKDAKGKVILEKHEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 381 VINVATINSRLGSQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L + F ++ Y  +GL A  ++ +N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 KGMEAGMYGLILTIAFCLIYYKVFGLFAAAALTVNMVLTIGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +SV  ++  G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 501 AVGMSVDANVLIYERIKEELRNGRSVQQAIHEGYNGAFTSIFDSNLTTILTSLVLYAVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ ++    K      
Sbjct: 561 GPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKLW 603



 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   +   I  + +  I +K  F L A   L +++  T+G  +L G
Sbjct: 429 TIGASLGADNVAKGMEAGMYGLILTIAFCLIYYKV-FGLFAAAALTVNMVLTIGLMSLIG 487

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 488 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEELR---NGRSVQQAIHEGYNGAFTSIFDS 544

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ ++Y    +  ++
Sbjct: 545 NLTTILTSLVLYAVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWVYGGNKRVKKL 602


>gi|74318098|ref|YP_315838.1| preprotein translocase subunit SecF [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057593|gb|AAZ98033.1| preprotein translocase protein SecF [Thiobacillus denitrificans
           ATCC 25259]
          Length = 310

 Score =  204 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 159/299 (53%), Gaps = 3/299 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L P    I FM        IS+L  + +I  L+  GLN G+DF GG  + +  +   
Sbjct: 1   MLELFPFKKTIPFMSWGKATTAISLLTFLFAIWALWDKGLNLGVDFTGGTVIEITTSHAA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  +R  LE   + +IS Q F   ++ L+RL  +   + A+T     V   +  + P  
Sbjct: 61  NLPEIRGALEKTGLPEISVQTFGTSRDVLIRLPNKAHINAAETS--NRVLAAVRTVDPSV 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  + VGP++ +EL   G + +++ A  ++ Y+ IRF+W FA+  +   + DI   LG
Sbjct: 119 ELRRVDFVGPQVGKELYDSGALALLVVAFGIMAYLAIRFEWRFAVAGMLANLHDIVIILG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            FA F  EF LT +A VL ++GYSVN+ VVV+DR+R+N++      +   +ID +I  T+
Sbjct: 179 VFAFFQWEFTLTVLAGVLAVLGYSVNESVVVFDRIRENIRKM-RGATIPHIIDDAITRTM 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T  +  I VL M  +GG  + +FA+ +  GI+    SS+ +A+P+LL     R 
Sbjct: 238 SRTIITHGSTQIMVLSMLFFGGEALHNFALALTIGIMFGIYSSVLVASPLLLMFGVKRE 296



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 92/205 (44%), Gaps = 5/205 (2%)

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +             +    ++   + +     VG  +G +    G  A++     I+ ++
Sbjct: 94  NKAHINAAETSNRVLAAVRTVDPSVELRRVDFVGPQVGKELYDSGALALLVVAFGIMAYL 153

Query: 380 IVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438
            + +  ++ +    +   ++++ L + +      TL  +AG++  +G +V+ +++V +RI
Sbjct: 154 AIRFEWRFAVAGMLANLHDIVIILGVFAFFQWEFTLTVLAGVLAVLGYSVNESVVVFDRI 213

Query: 439 REE--NRKNQSVFCSLDMGFSRAYS-TIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           RE     +  ++   +D   +R  S TI     T ++   +LFF GG A+  FA+ + + 
Sbjct: 214 RENIRKMRGATIPHIIDDAITRTMSRTIITHGSTQIMVLSMLFF-GGEALHNFALALTIG 272

Query: 496 ILISMFTAISIVRAMMIFIIRYKKM 520
           I+  +++++ +   +++     ++ 
Sbjct: 273 IMFGIYSSVLVASPLLLMFGVKREH 297


>gi|226946084|ref|YP_002801157.1| preprotein translocase subunit SecD [Azotobacter vinelandii DJ]
 gi|226721011|gb|ACO80182.1| SecD membrane export protein [Azotobacter vinelandii DJ]
          Length = 622

 Score =  204 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 163/526 (30%), Positives = 272/526 (51%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     N + LGLDL GG H +LEVD D  ++  L++Y  E++S L+KE  
Sbjct: 107 NLAPTTPGWLRALGANPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGEVKSLLRKERQ 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q    I L FADS   E     +       +        + +        + + 
Sbjct: 167 RYRSLPQQDGAIQLGFADSGQLEQAQASIRKNFSDFDLSAGERNGQPV--------LRLT 218

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+   + ++  ++I Q++  +R R++++G+SE  +QR G++RI+++LPG QD +  +++L
Sbjct: 219 LTAAKLAEIREYSIRQNLTTVRNRVNELGVSEPLVQRQGANRIVVELPGVQDTAEAKRIL 278

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F     ++     +      R+       +E  + I+G  +  A A++D    
Sbjct: 279 GKTASLEFRMAAESD-ASRAITETFEFREGGRPPVALERSLIITGDQVTDAQASYDENG- 336

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+I  D  G       TR+++G+ +AV+   +      +                  
Sbjct: 337 RPQVNIRLDGHGGELMNRATRNSVGRAMAVLFIEQKPVTRYVKQTIDGVEKEVAVETFRE 396

Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG++
Sbjct: 397 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTLGPSLGAE 456

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I  G  A + G + + LFM+++Y  +GL+A  ++  N++L +AL+SLLGATLTLP IAG
Sbjct: 457 NIQLGIQASLWGFLFVTLFMLLIYKFFGLLAAVALAFNMVLLVALMSLLGATLTLPGIAG 516

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     SV  ++  GF RA+S I D N+T L+   +LF 
Sbjct: 517 IVLTMGMAVDANVLIFSRIREEIANGLSVQRAIHEGFDRAFSAILDGNLTTLLVGGILFA 576

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I+ S+FTAI + R M+  I   + +K + I
Sbjct: 577 MGTGPVKGFAVTMSLGIVTSLFTAIIVTRGMVNLIYGGRDLKKLWI 622



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 92/250 (36%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +     V +         +    +    ++ L       G +         +  +
Sbjct: 374 VTRYVKQTIDGVEKEVAVETFREEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 433

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  E I+ GI   +   + + +++ + +K+ F L A   L 
Sbjct: 434 AGGLAAPMYFAEERTLGPSLGAENIQLGIQASLWGFLFVTLFMLLIYKF-FGLLAAVALA 492

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   +   +L G    L  +A ++  +G +V+  V+++ R+R+ +      +S +  I
Sbjct: 493 FNMVLLVALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGLSVQRAI 549

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +  +      +  ++   +    +   G   +  FA+ M+ GIV +  ++I +   ++ 
Sbjct: 550 HEGFDRAFSAILDGNLTTLLVGGILFAMGTGPVKGFAVTMSLGIVTSLFTAIIVTRGMVN 609

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 610 LIYGGRDLKK 619



 Score = 45.5 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLR 51
          +   W  +L   +  +G++ + PN  P     +   A    +I  G DL 
Sbjct: 4  KYPLWKYLLILAVLLVGIVYSAPNLFPDDPAIQISGASAARQIGQG-DLE 52


>gi|194437589|ref|ZP_03069685.1| acriflavine resistance protein D [Escherichia coli 101-1]
 gi|194423395|gb|EDX39386.1| acriflavine resistance protein D [Escherichia coli 101-1]
          Length = 1037

 Score =  204 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQPLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|254497604|ref|ZP_05110390.1| hypothetical protein LDG_2014 [Legionella drancourtii LLAP12]
 gi|254353173|gb|EET11922.1| hypothetical protein LDG_2014 [Legionella drancourtii LLAP12]
          Length = 618

 Score =  204 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 172/525 (32%), Positives = 281/525 (53%), Gaps = 38/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       +  GLDLRGG H +LEVD D  ++   +     +   L++ G+
Sbjct: 103 NLAPSTPGWLRAIRAEPMKQGLDLRGGVHFLLEVDVDSVISRRYEGIMKNIGQSLREIGV 162

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +R + +K + L F D +  E     +   +  V            + +  + EI  
Sbjct: 163 RYSGIRYVADKGVNLRFRDPQSMERALAGLREKMPDVL----------FVKSKADNEIVG 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +    ++ +  + IEQ+M I+R R++++G+ E+ +Q+ G+ R+ + LPG QD +R +Q+
Sbjct: 213 SIPPAELNTMRQNTIEQTMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQI 272

Query: 206 LGTTAKMSFHKVLPNNSKK-GFMFGVRFLRD----SDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F+ V  +N  +     G   + D     DG+  L++ +V +SG  +  A ++
Sbjct: 273 LGGTATLQFYLVDQDNDPQIAKQTGSVPVSDKLYMMDGHPILLKRQVVLSGDSITSAVSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGR 301
           FD +T  P V I     G   F +VTR+NIGK +                    V     
Sbjct: 333 FDQQTATPAVQIQLGGGGESLFTKVTRENIGKRMAIVYVETKNAIQTINGVDTRVTHKEE 392

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            + +  + Q       QI+G    + A  LA +LRAG+LP  +  +EER VG  LG ++I
Sbjct: 393 RVISAPVIQNALGNNFQITGLTDSKEASNLALLLRAGALPAAIYPIEERTVGPTLGKENI 452

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G  ++  G+ LI++ M+V Y  +GL+AD ++ LN++L  ALLS++ ATLTLP IAGIV
Sbjct: 453 RRGIVSLEVGMGLILILMLVYYRVFGLIADIALMLNLVLLCALLSVIDATLTLPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R   S   ++  G+ RA+STI D+N+T LI  ++LF  G
Sbjct: 513 LTVGMAVDANVLIYERIREELRHGLSPQAAIYAGYERAFSTILDANVTTLIVAIILFAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            G VRGFA+T+ L +L SM T I+  RA++ +    + +K + I 
Sbjct: 573 TGPVRGFAVTLSLGLLTSMLTGITFTRAIVNWYYGGRTVKKLSIG 617



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 97/251 (38%), Gaps = 4/251 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G     V       +  +      +   +    +    +N L       G + ++     
Sbjct: 363 GKRMAIVYVETKNAIQTINGVDTRVTHKEERVISAPVIQNALGNNFQITGLTDSKEASNL 422

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +   +           VGP + +E IR+GIV + +    +LI + + ++  F L A
Sbjct: 423 ALLLRAGALPAAIYPIEERTVGPTLGKENIRRGIVSLEVGMGLILILMLVYYRV-FGLIA 481

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L+L++       ++      L  +A ++  +G +V+  V++Y+R+R+ ++     +S
Sbjct: 482 DIALMLNLVLLCALLSVIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELR---HGLS 538

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +  I           +  ++   I  + +   G   +  FA+ ++ G++ +  + I   
Sbjct: 539 PQAAIYAGYERAFSTILDANVTTLIVAIILFAVGTGPVRGFAVTLSLGLLTSMLTGITFT 598

Query: 817 APILLFIYDWR 827
             I+ + Y  R
Sbjct: 599 RAIVNWYYGGR 609



 Score = 43.9 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 28/150 (18%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++  +I  IG + A+PN   ++                          V+++ 
Sbjct: 4   KYPLWKNLMLVVIAIIGFIYAIPNLYTENP-------------------------VVQIS 38

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
            +  V+        ++   L+K+ +   S+      + + FA +  +    D +   L  
Sbjct: 39  AETPVD--YDELKTQVEGILQKDKLSYKSVSAQNEGVEIIFASTDSQLLARDAIKNALGN 96

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
                LN+ P     +     E        
Sbjct: 97  QYTVALNLAPSTPGWLRAIRAEPMKQGLDL 126


>gi|260770691|ref|ZP_05879621.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio furnissii CIP 102972]
 gi|260614272|gb|EEX39461.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio furnissii CIP 102972]
          Length = 1042

 Score =  204 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 67/690 (9%), Positives = 182/690 (26%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L  +        + ++P   P               + L    
Sbjct: 8   RPIFAWVIAIIIMLAGVLSIM-----TLPVSQYPDIAPPA-------------VSLSGSY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGASAETVENSVTQTIEQNMNGIDNLLYMSATSDSAGNFSITLTFESGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L    + L  +  +  +         +++     +       E +  ++ Q  D +   
Sbjct: 110 KLSLAEATLPTEVTQQGITVAKSSSSFLMVVGFISNDGSMDNTEIADFMVSQVKDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L     T A++       N        G     +  
Sbjct: 170 QGVGEVQVFGAQ-HAMRIWLDPNKLNNFQLTPAQVKTAISAQNTQVSVGQLGATPALEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +   +                +    +   +    +        +       
Sbjct: 229 QLNATITAQSRFT-------------TVKQFENILLKVDTDGAQIRLKDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +      +          +   T +      A L+         +           
Sbjct: 276 QAVALYNGKYASGIAVKLATGANALETADAVKARLAELQPTFPSNIEVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +++  G ++   ++
Sbjct: 336 SIEEVVHTLMEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +      +    +    +      + 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQITGALVGIAMVLSAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFG   G   R F++T+  S+++S+  A+ +  A+   +           ++   +  
Sbjct: 456 MAFFGGAAGAIYRQFSLTIVSSMVLSVLVAMILTPALCATLLKPIKKGEAHHVKRGPLAW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +   ++  + +             + +G     
Sbjct: 516 FNTWFDRGTESYQNTVNRGVNHRVRYMLAYIVIVGVLATLWTRLPTSFVPEEDQGIFLSI 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V              +  ++      +    E  F V      G           +K   
Sbjct: 576 VQLPVGATQEQTLEVMGKVRKHFQEDEKDAVESVFTVAGFSFAGQGQNMGMAFVRLKDWS 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
               P  ++             +    I  
Sbjct: 636 ERTDPALSVDAVVGRSYPAFAPIKEAQIFS 665



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 80/204 (39%), Gaps = 6/204 (2%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                ++    ++    P +             +  I + +  ++ + + + + +++  +
Sbjct: 301 ETADAVKARLAELQPTFPSNIEVVYPYDTTPFVKISIEEVVHTLMEAIVLVFLVMYLFLQ 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + +  T G  A FG   N   +  ++  IG  V+D +VV + +    
Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S R+   KS+ +  G  V  +M      +PMA +G   G++   F++ +   +
Sbjct: 419 VMSEEGLSPREATRKSMGQITGALVGIAMVLSAVFIPMAFFGGAAGAIYRQFSLTIVSSM 478

Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829
           V++   ++ +   +   +     K
Sbjct: 479 VLSVLVAMILTPALCATLLKPIKK 502



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 77/230 (33%), Gaps = 8/230 (3%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             +        ++      +F +   E+   V      G +       + ++  +  +  L
Sbjct: 791  ANADGDMVPFDAFATTKWTFGSPRLERFNGVPAVNIQGSAAPGKSTGDAMQAILDIVKQL 850

Query: 649  STIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                  E  G          +      +S + + + +   ++ W      I  + L +  
Sbjct: 851  PEGIGLEWTGASYQEVQTGSQAPFLYALSILIVFLSLAALYESWSVPFSIILVVPLGVFG 910

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +    +  +  ++     +LT IG S  + +++ +  +    LY   +       ++  
Sbjct: 911  AIAAATMKSLSNDIYFQVGLLTTIGLSAKNAILIVEFAKD---LYDDGMDLVHATVEACR 967

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              L   + TS A  + VLP+A+    G +   +    +  G++ A   +I
Sbjct: 968  MRLRPIMMTSFAFILGVLPLALSTGAGAASRNAIGWGVVGGMLAATILAI 1017


>gi|82776659|ref|YP_403008.1| putative multidrug-efflux transport protein [Shigella dysenteriae
           Sd197]
 gi|309789028|ref|ZP_07683623.1| acrB protein [Shigella dysenteriae 1617]
 gi|81240807|gb|ABB61517.1| putative multidrug-efflux transport protein [Shigella dysenteriae
           Sd197]
 gi|308923299|gb|EFP68811.1| acrB protein [Shigella dysenteriae 1617]
          Length = 1033

 Score =  204 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L        +     +  I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTRSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDLLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592
               Q       R     + +   +     L    L           ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 42.0 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|108763901|ref|YP_632856.1| protein-export membrane protein SecF [Myxococcus xanthus DK 1622]
 gi|108467781|gb|ABF92966.1| protein-export membrane protein SecF [Myxococcus xanthus DK 1622]
          Length = 392

 Score =  204 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 85/258 (32%), Positives = 149/258 (57%), Gaps = 5/258 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
               +   A +P+D   V+  +ES  I  +      GE        YQ   S    RV  
Sbjct: 125 PNGIIRFRAAQPMDSDAVKKAVESAGI-GVQEVRDLGEAQGGTGYDYQVVASGMADRVFA 183

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +   + +  P    +  + VGP++ ++L  +GI+ ++ S +A+LIY+  RF + F  GA
Sbjct: 184 ALNAGLEK--PDFEQRRVDYVGPQVGKQLRNRGIMALLYSMVAILIYVAFRFDFKFGPGA 241

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + +++ D+    G++ +   EFNLTA+AA+LT++GYSVND +V+YDR+R++M  Y     
Sbjct: 242 LLSMVHDVIMVAGYYLVSRREFNLTAIAALLTVVGYSVNDTIVIYDRIREDMAKY-KGKP 300

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           F ++I+ +IN+TLGR++ TS    +S++ + ++G   I  FA+ M  GIVV   S+I+IA
Sbjct: 301 FAEVINIAINDTLGRTILTSGTTALSLIGLLIFGVGEIFDFAMAMLVGIVVGVYSTIYIA 360

Query: 817 APILLFIYDW-RAKNARI 833
           +P+ +++ +   AK+AR+
Sbjct: 361 SPLTIWLDERAAAKDARL 378


>gi|300903475|ref|ZP_07121400.1| putative ATP synthase F0, A subunit [Escherichia coli MS 84-1]
 gi|301302817|ref|ZP_07208945.1| putative ATP synthase F0, A subunit [Escherichia coli MS 124-1]
 gi|300404507|gb|EFJ88045.1| putative ATP synthase F0, A subunit [Escherichia coli MS 84-1]
 gi|300841752|gb|EFK69512.1| putative ATP synthase F0, A subunit [Escherichia coli MS 124-1]
 gi|315256481|gb|EFU36449.1| putative ATP synthase F0, A subunit [Escherichia coli MS 85-1]
          Length = 1037

 Score =  204 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVTAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVTAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|257452887|ref|ZP_05618186.1| protein translocase subunit secF [Fusobacterium sp. 3_1_5R]
 gi|257466748|ref|ZP_05631059.1| protein translocase subunit secF [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917897|ref|ZP_07914137.1| translocase subunit secF [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059429|ref|ZP_07923914.1| translocase subunit secF [Fusobacterium sp. 3_1_5R]
 gi|313685105|gb|EFS21940.1| translocase subunit secF [Fusobacterium sp. 3_1_5R]
 gi|313691772|gb|EFS28607.1| translocase subunit secF [Fusobacterium gonidiaformans ATCC 25563]
          Length = 313

 Score =  204 bits (517), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 82/274 (29%), Positives = 145/274 (52%), Gaps = 3/274 (1%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +   I S+ + FT GLNYGIDF GG  L +     + L  +  +L+++Q       N   
Sbjct: 17  LTMVILSLGVFFTKGLNYGIDFSGGNLLQIKYENKITLHDINESLDNIQGIPQIGTNSRK 76

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +             +++    E++     + V    I   + VG  +  EL    I  +
Sbjct: 77  VQISEDNTVIIRTQEISEDEKKEILNAL--QSVGAYQIDKEDKVGASVGEELKTSAIYAL 134

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I A+ ++IYI  RF++ FA+GAI  L+ D+   LG  +L   E N   +AA+LT++GYS
Sbjct: 135 GIGAVLIIIYITFRFEFIFAVGAIVALLHDLILALGCISLLYYEINTPFIAAILTILGYS 194

Query: 734 VNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +ND +VV+DR+R+N+ +   T +S  + + KS+N+ + RS+ TS+    +++ + + GG 
Sbjct: 195 INDTIVVFDRIRENLKRRAKTQMSIEECLAKSVNQVMIRSINTSVTTLFAIVAILLLGGD 254

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + +F + +  GI+    SS+FIA P++ F++  
Sbjct: 255 SLRTFIVTLLVGILAGTYSSVFIATPVVYFLHKK 288


>gi|315178553|gb|ADT85467.1| AcrB protein [Vibrio furnissii NCTC 11218]
          Length = 1042

 Score =  204 bits (517), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 63/602 (10%), Positives = 169/602 (28%), Gaps = 41/602 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L  +        + ++P   P               + L    
Sbjct: 8   RPIFAWVIAIIIMLAGVLSIM-----TLPVSQYPDIAPPA-------------VSLSGSY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGASAETVENSVTQTIEQNMNGIDNLLYMSATSDSAGNFSITLTFESGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L    + L  +  +  +         +++     +       E +  ++ Q  D +   
Sbjct: 110 KLSLAEATLPTEVTQQGITVAKSSSSFLMVVGFISNDGSMDNTEIADFMVSQVKDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L     T A++       N        G     +  
Sbjct: 170 QGVGEVQVFGAQ-HAMRIWLDPNKLNNFQLTPAQVKTAISAQNTQVSVGQLGATPALEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +   +                +    +   +    +        +       
Sbjct: 229 QLNATITAQSRFT-------------TVKQFENILLKVDTDGAQIRLKDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +      +          +   T +      A L+         +           
Sbjct: 276 QAVALYNGKYASGIAVKLATGANALETADAVKARLAELQPTFPSNIEVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +++  G ++   ++
Sbjct: 336 SIEEVVHTLMEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +      +    +    +      + 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQITGALVGIAMVLSAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFG   G   R F++T+  S+++S+  A+ +  A+   +++  K              
Sbjct: 456 MAFFGGAAGAIYRQFSLTIVSSMVLSVLVAMILTPALCATLLKPIKKGEAHHVKRGPLAW 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                       +              +  +   G+   +  +         ++ + LS+
Sbjct: 516 FNTWFDRGTESYQNTVNRGVNHRVRYMLAYIVIIGVLATLWTRLPTSFVPEEDQGIFLSI 575

Query: 594 VR 595
           V+
Sbjct: 576 VQ 577



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 80/204 (39%), Gaps = 6/204 (2%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                ++    ++    P +             +  I + +  ++ + + + + +++  +
Sbjct: 301 ETADAVKARLAELQPTFPSNIEVVYPYDTTPFVKISIEEVVHTLMEAIVLVFLVMYLFLQ 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + +  T G  A FG   N   +  ++  IG  V+D +VV + +    
Sbjct: 361 NFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S R+   KS+ +  G  V  +M      +PMA +G   G++   F++ +   +
Sbjct: 419 VMSEEGLSPREATRKSMGQITGALVGIAMVLSAVFIPMAFFGGAAGAIYRQFSLTIVSSM 478

Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829
           V++   ++ +   +   +     K
Sbjct: 479 VLSVLVAMILTPALCATLLKPIKK 502



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 78/230 (33%), Gaps = 8/230 (3%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             +        ++    + +F +   E+   V      G +       + ++  +  +  L
Sbjct: 791  ANADGDMVPFDAFATTEWTFGSPRLERFNGVPAVNIQGSAAPGKSTGDAMQAILDIVKQL 850

Query: 649  STIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                  E  G          +      +S + + + +   ++ W      I  + L +  
Sbjct: 851  PEGIGLEWTGASYQEVQTGSQAPFLYALSILIVFLSLAALYESWSVPFSIILVVPLGVFG 910

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +    +  +  ++     +LT IG S  + +++ +  +    LY   +       ++  
Sbjct: 911  AIAAATMKSLSNDIYFQVGLLTTIGLSAKNAILIVEFAKD---LYDDGMDLVHATVEACR 967

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              L   + TS A  + VLP+A+    G +   +    +  G++ A   +I
Sbjct: 968  MRLRPIMMTSFAFILGVLPLALSTGAGAASRNAIGWGVVGGMLAATILAI 1017


>gi|239818076|ref|YP_002946986.1| preprotein translocase subunit SecF [Variovorax paradoxus S110]
 gi|239804653|gb|ACS21720.1| protein-export membrane protein SecF [Variovorax paradoxus S110]
          Length = 319

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 156/302 (51%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       +S +    ++  L   GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIHKTIPFMRHALVLNIVSFVTFALAVFFLLHRGLHLSVEFTGGTVMEVAYQQSAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR  +  L   D+  Q++   ++  +RL  Q G S  Q      V + +  + P +T
Sbjct: 61  IGKVREAIGKLGYPDVQVQSYGTSRDVQIRLPAQKGMSSDQQS--AQVMQALKSVDPSAT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +  E+VGP++  EL   G+  + +  + ++IY+ IRF+W FAL  +   + D+   LGF
Sbjct: 119 QRGIEVVGPQVGEELTTNGLKALGMVVVGIMIYLAIRFEWKFALATVLANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AAVL ++GYSVN+ VV++DR+R+N + Y   ++  ++ID +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAVLAVLGYSVNESVVIFDRVRENFRRYRK-MNTVEIIDNAITSTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI     SS F+AA I +++   R   
Sbjct: 238 RTIITHGSTQLVVLSMFFFGGPTLHYFALALTIGICFGIYSSCFVAAAIAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|163746862|ref|ZP_02154219.1| SecF protein [Oceanibulbus indolifex HEL-45]
 gi|161379976|gb|EDQ04388.1| SecF protein [Oceanibulbus indolifex HEL-45]
          Length = 322

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 174/305 (57%), Gaps = 7/305 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L+PD     F        G S++  I S+      GLN+GIDF+GG  L   A   
Sbjct: 1   MRLKLVPDNTNFDFFGYAKITFGASVVAMILSLIAWGVMGLNFGIDFRGGTTLRTEATEA 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           VD+   R  L  L++GD++                ++R+Q Q G   A T  ++ ++  +
Sbjct: 61  VDVGAYRDALSVLELGDVTISEVFDPGFRDDQHVAMIRVQAQEGQEAATTDTIQTIQTAL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            E+ P     + E VGPK+S ELI+   + V  +  A+LIYIW+RF+W F++GA+  L  
Sbjct: 121 QEVSPDIKFTSVESVGPKVSGELIQTAFLAVGGALAAILIYIWLRFEWQFSVGAVVALFH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+G F+L  I F+L  VAA+LT+IGYS+ND VV++DR+R+N++ Y      R++++
Sbjct: 181 DVVLTIGLFSLLQIRFDLPVVAAILTIIGYSINDTVVIFDRLRENLRKYKKR-PLREVMN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            S+NETL R++ TS    ++++ + + GG VI +F   + +G++V   SS+++A  ++LF
Sbjct: 240 LSVNETLSRTLMTSGTTLLALIALLILGGDVIRAFVFAITWGVIVGTYSSVYVAKNVVLF 299

Query: 823 IYDWR 827
           +   R
Sbjct: 300 LGVKR 304


>gi|283954657|ref|ZP_06372175.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793849|gb|EFC32600.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 323

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 156/285 (54%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR RF  + +S +    SI LL+  GL YGIDF GG  + +       ++ +R  LE
Sbjct: 10  YDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLIQLKYENAAPIAQIREILE 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                        G    +       G +   +  +      + +      ++  ++VGP
Sbjct: 70  KQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEYISTLLKDTGKFEVRRADVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ + IS IA+LIYI +RF+W FAL AI + I D+  TLG  +LF I+ N
Sbjct: 128 KVGDELRNKGLMAIAISLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVLT++GYS+ND ++++DR+R+ +K  +       +I++S++ TL R+V TS   
Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKSELAPIINESVSATLSRTVLTSGLT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +V+ +  +GG +I  F++ +  GI++   SSIF+A+P LL+  
Sbjct: 247 LATVVILYFFGGEMIQGFSLTLIVGIIIGTLSSIFVASPTLLWFK 291


>gi|237654067|ref|YP_002890381.1| preprotein translocase subunit SecF [Thauera sp. MZ1T]
 gi|237625314|gb|ACR02004.1| protein-export membrane protein SecF [Thauera sp. MZ1T]
          Length = 310

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 155/302 (51%), Gaps = 2/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS+L    ++  L T GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIKKDIPFMRHALVFNVISLLTFALAVFFLLTRGLHLSVEFTGGTLVEVSYAQAPQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  L      D   QNF   ++ L+RL  +  D         ++        P   
Sbjct: 61  LEPIREALAGSGYPDAQVQNFGSARDLLIRLPNRE-DLDTSRVSETVMNTLQQVGGPAPE 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL   G + +++  + ++IY+ +RF+W FA+ AI   + D+   LGF
Sbjct: 120 LRRVEFVGPQVGKELAADGSMALLLVIVGIMIYLALRFEWRFAVSAIIANLHDVIIILGF 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AAVL ++GYSVN+ VVV+DR+R+  K    +++   ++D +I  T+ 
Sbjct: 180 FAFFQWEFSLPVLAAVLAVLGYSVNESVVVFDRVRETFKK-KRNMTTPQVLDHAITSTIS 238

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R+V T  +  + VL M V+GG  +  F++ +  GI     SS+ +A+P+++++   R + 
Sbjct: 239 RTVITHGSTQVMVLSMLVFGGETLYYFSLALTIGICFGIYSSVLVASPLVMWLGVSREQF 298

Query: 831 AR 832
            +
Sbjct: 299 IK 300


>gi|188496215|ref|ZP_03003485.1| acriflavine resistance protein D [Escherichia coli 53638]
 gi|188491414|gb|EDU66517.1| acriflavine resistance protein D [Escherichia coli 53638]
          Length = 1037

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|157158507|ref|YP_001463792.1| aminoglycoside/multidrug efflux system [Escherichia coli E24377A]
 gi|157080537|gb|ABV20245.1| acriflavine resistance protein D [Escherichia coli E24377A]
          Length = 1037

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLSIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|312967758|ref|ZP_07781973.1| inner membrane protein [Escherichia coli 2362-75]
 gi|312287955|gb|EFR15860.1| inner membrane protein [Escherichia coli 2362-75]
          Length = 1037

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVPQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|301022364|ref|ZP_07186254.1| putative ATP synthase F0, A subunit [Escherichia coli MS 69-1]
 gi|300397559|gb|EFJ81097.1| putative ATP synthase F0, A subunit [Escherichia coli MS 69-1]
          Length = 1037

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 64/186 (34%), Gaps = 8/186 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E         L       +  IS + + + +   ++ W      +  + L +   L 
Sbjct: 853  FGLEWTEMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALL 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   +        +    +  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNQKGHDLFEATLHACRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA     G     +    +  G++ A   +I+      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRR 1029

Query: 827  RAKNAR 832
                 R
Sbjct: 1030 FPLKPR 1035


>gi|33152765|ref|NP_874118.1| preprotein translocase subunit SecD [Haemophilus ducreyi 35000HP]
 gi|33148989|gb|AAP96507.1| Protein-export membrane protein SecD [Haemophilus ducreyi 35000HP]
          Length = 614

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 160/523 (30%), Positives = 286/523 (54%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + +  GLDLRGG   ++EVD +  +    +   D LR+ L+KE +
Sbjct: 104 NLAPATPVWLSNIGGSPMKRGLDLRGGVRFLMEVDMNTALVKQQETLQDSLRTELRKEKL 163

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++  N    + FA++   E  A  +      + +K             T  E++ 
Sbjct: 164 QYKAIKKGDNFTTQIEFANNDIAEKAARFIKRNHAYLETKF-----------ITASEVAF 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S+  + +    AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 213 TPSETALAKSRDTAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    + +    G+           DG   ++  K  + G H+     +
Sbjct: 273 LGATATLEFRLVNAEANVESATRGIVPADSELKHTRDGRAVVLRRKPSLGGEHIVD-ATS 331

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I     G     ++T+  +G+P+A +                       
Sbjct: 332 GKDERGLPQVSIHLYAKGGNMMADITKSAVGRPMATLYSEFKDSGRKDANGKVILEKHEE 391

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +    + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 392 VINVATINSRLGSQFQITGIDSTAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG  A + GL+L ++F ++ Y  +G+ A  ++ +N++LT+ L+SL+GATLT+P IAGI+L
Sbjct: 452 KGMEAGIYGLILTIVFCLIYYKVFGIFATAALLVNMVLTIGLMSLIGATLTMPGIAGIIL 511

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  +S+  +++ G++ A+++IFDSN+T ++ ++VL+  G 
Sbjct: 512 AVGMSVDANVLIYERIKEELRNGRSIQQAINEGYNGAFTSIFDSNLTTILTSLVLYSVGT 571

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFAIT+ L ++ISMFTAI+  R ++ +I   K++K + I
Sbjct: 572 GPVKGFAITLALGVMISMFTAITGTRMLVNWIYGGKRVKKLWI 614



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 85/176 (48%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + KG+   I   I  +++  I +K  F + A   L++++  T+G  +L G
Sbjct: 440 TIGASLGADNVAKGMEAGIYGLILTIVFCLIYYKV-FGIFATAALLVNMVLTIGLMSLIG 498

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++      S +  I++  N        +
Sbjct: 499 ATLTMPGIAGIILAVGMSVDANVLIYERIKEELR---NGRSIQQAINEGYNGAFTSIFDS 555

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   ++ L +   G   +  FAI +A G++++  ++I     ++ +IY  +    
Sbjct: 556 NLTTILTSLVLYSVGTGPVKGFAITLALGVMISMFTAITGTRMLVNWIYGGKRVKK 611



 Score = 41.2 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 35/133 (26%), Gaps = 30/133 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   +  IG L ALPN   +    +                  G+       
Sbjct: 4   RFPLWKNLMIIFVIIIGGLYALPNLYGEDPSVQI----------------SGTR------ 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF----KENIADKVTL 117
             +  +  L    +     L    I + S       I +   +       KE I++ +  
Sbjct: 42  GQEASSETLAHVQE----TLSSMNITLKSAVLENGSILVRLTNDEQQLPAKEKISEVLGD 97

Query: 118 FLQGVNSKLNVDP 130
                 +     P
Sbjct: 98  KFSVALNLAPATP 110


>gi|332530976|ref|ZP_08406899.1| preprotein translocase subunit SecF [Hylemonella gracilis ATCC
           19624]
 gi|332039587|gb|EGI75990.1| preprotein translocase subunit SecF [Hylemonella gracilis ATCC
           19624]
          Length = 318

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 154/302 (50%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       +S++  + +   L T GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFKIRRDIPFMRHALVLNAVSLVTFLLAAFFLVTRGLHLSVEFTGGTLMEVSYTQTAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  +  L   D+  QNF   ++ L+RL    G S ++      V   +      +T
Sbjct: 61  LEAIRGGIAKLGYTDVQVQNFGTARDVLIRLPAVKGVSSSEQS--AQVLGVLQAADAGAT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ +E VGP++  EL   G+  +    I ++IY+ +RF+W F +  I   + D+   LGF
Sbjct: 119 LRRSEFVGPQVGDELALDGLKALAFVVIGIVIYLAVRFEWKFGVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AAVL ++GYSVN+ VV++DR+R++ +     +  +  ID +I  T+ 
Sbjct: 179 FAFFQWEFSLPVLAAVLAVLGYSVNESVVIFDRIRESFRRQRK-MDVKATIDHAITSTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M ++GG  +  FA+ +  GI     SS+F+AA I +++   R   
Sbjct: 238 RTIITHGSTQLVVLSMLIFGGPTLHYFAMALTIGICFGIYSSVFVAASIAMWLGVKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|82777847|ref|YP_404196.1| aminoglycoside/multidrug efflux system [Shigella dysenteriae Sd197]
 gi|309784802|ref|ZP_07679435.1| acriflavine resistance protein D [Shigella dysenteriae 1617]
 gi|81241995|gb|ABB62705.1| AcrD [Shigella dysenteriae Sd197]
 gi|308927172|gb|EFP72646.1| acriflavine resistance protein D [Shigella dysenteriae 1617]
          Length = 1037

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +              A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGGAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L   ++ G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSIMLVVPLGVIGALLATSMLGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|85708079|ref|ZP_01039145.1| preprotein translocase subunit [Erythrobacter sp. NAP1]
 gi|85689613|gb|EAQ29616.1| preprotein translocase subunit [Erythrobacter sp. NAP1]
          Length = 556

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 177/558 (31%), Positives = 295/558 (52%), Gaps = 40/558 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN-------------------- 42
              W  I   +        A+P+ +        P+  P +                    
Sbjct: 4   TPLWKKISLWVFTLALAAAAIPSLISSFTSSDEPAPAPADDVTAEAPAFPEVDGEDEEES 63

Query: 43  ---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE--GIGVFSMRQIQNK 97
              +I+LGLDL GGSHL+LE +  D  +  L+   + + S L++    I      +   +
Sbjct: 64  SLPQINLGLDLAGGSHLLLEANPADVASQRLENMEEAVESALRQAVPAIEFGDTSRSDGQ 123

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           ++         +     +   + G   +     ++  L     + I +  +       ++
Sbjct: 124 LSFILDSVADIDRARAVLEPIMMGDGLR-----REWDLSVVDGQRIVLSPTDAGQATALN 178

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            A+E ++E++R+RID +G  E TI R G +RI++Q+PG QDP  L++LLG TA++ F  V
Sbjct: 179 SAMEGAVEVVRRRIDLLGTREPTIIRQGENRIVVQVPGLQDPVALKRLLGETAELEFKLV 238

Query: 218 LPNNSKKGFMFGVR----------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
                      GV              D  G    V+    I G  L  A A  DP+T++
Sbjct: 239 DQQALPTNTAAGVANPGSQIYPYAPETDFAGQFEAVKRLGGIRGDSLINARAGVDPQTNE 298

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
            VV+I FD+ G ++F +++ +N+G+  A++LDG V++AP  N+ I  G AQISG FT +T
Sbjct: 299 NVVNIQFDQQGGQKFAQLSTENVGERFAIILDGEVISAPFFNEPILGGSAQISGAFTPDT 358

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  LA  L++G+LP+ L +VEER VG DLG++SI  G  A++ G + ++  M+  YG++G
Sbjct: 359 ANELAISLQSGALPVPLTVVEERTVGPDLGAESIRSGLIAMLIGSIAVIALMVATYGRFG 418

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           + A  ++  NV++ L L+++   TLTLP IAG VL +G AVD+N+L+NERIREE ++ + 
Sbjct: 419 VYATAALVFNVLILLGLMAIGNFTLTLPGIAGFVLTVGAAVDANVLINERIREERKRGRK 478

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           V  +++ G+  A   I+D+N+T  IA V+LF+FG G +RGFA+ + + +  S+FTA+++ 
Sbjct: 479 VITAVENGYKEASRAIYDANVTNFIAGVLLFWFGSGPIRGFAVVLVIGLATSVFTALTLT 538

Query: 508 RAMMIFIIRYKKMKSIDI 525
           +  +   +  K+ K I I
Sbjct: 539 KMWVSGYLAAKRPKDITI 556



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 71/156 (45%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  E IR G++ ++I +IA++  +   +   F + A   L+ ++   LG  A+    
Sbjct: 384 GPDLGAESIRSGLIAMLIGSIAVIALMVATYG-RFGVYATAALVFNVLILLGLMAIGNFT 442

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  +G +V+  V++ +R+R+  K           ++    E        ++
Sbjct: 443 LTLPGIAGFVLTVGAAVDANVLINERIREERKRGRK---VITAVENGYKEASRAIYDANV 499

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             FI+ + +  +G   I  FA+ +  G+  +  +++
Sbjct: 500 TNFIAGVLLFWFGSGPIRGFAVVLVIGLATSVFTAL 535


>gi|191167649|ref|ZP_03029459.1| acriflavine resistance protein D [Escherichia coli B7A]
 gi|209919942|ref|YP_002294026.1| aminoglycoside/multidrug efflux system [Escherichia coli SE11]
 gi|293446822|ref|ZP_06663244.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           B088]
 gi|300820871|ref|ZP_07101021.1| putative ATP synthase F0, A subunit [Escherichia coli MS 119-7]
 gi|301328988|ref|ZP_07222015.1| putative ATP synthase F0, A subunit [Escherichia coli MS 78-1]
 gi|307312540|ref|ZP_07592173.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli W]
 gi|331678450|ref|ZP_08379125.1| multidrug resistance protein [Escherichia coli H591]
 gi|190902329|gb|EDV62068.1| acriflavine resistance protein D [Escherichia coli B7A]
 gi|209913201|dbj|BAG78275.1| multidrug resistance protein [Escherichia coli SE11]
 gi|291323652|gb|EFE63080.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           B088]
 gi|300526624|gb|EFK47693.1| putative ATP synthase F0, A subunit [Escherichia coli MS 119-7]
 gi|300844622|gb|EFK72382.1| putative ATP synthase F0, A subunit [Escherichia coli MS 78-1]
 gi|306907463|gb|EFN37967.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli W]
 gi|315061785|gb|ADT76112.1| aminoglycoside/multidrug efflux system [Escherichia coli W]
 gi|323184477|gb|EFZ69852.1| inner membrane protein [Escherichia coli 1357]
 gi|323377634|gb|ADX49902.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli KO11]
 gi|331074910|gb|EGI46230.1| multidrug resistance protein [Escherichia coli H591]
          Length = 1037

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|323170272|gb|EFZ55925.1| inner membrane protein [Escherichia coli LT-68]
          Length = 1037

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|191172943|ref|ZP_03034478.1| acriflavine resistance protein D [Escherichia coli F11]
 gi|190906807|gb|EDV66411.1| acriflavine resistance protein D [Escherichia coli F11]
 gi|324011185|gb|EGB80404.1| putative ATP synthase F0, A subunit [Escherichia coli MS 60-1]
          Length = 1037

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|146276509|ref|YP_001166668.1| preprotein translocase subunit SecF [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554750|gb|ABP69363.1| protein translocase subunit secF [Rhodobacter sphaeroides ATCC
           17025]
          Length = 324

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 114/312 (36%), Positives = 176/312 (56%), Gaps = 7/312 (2%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              R  L P+   I F RA     G S+   + S+ +  T GLN+GIDF+GG  +   + 
Sbjct: 1   MAFRLKLCPEKTNINFFRAAPLTFGFSVFLMVASLVVWLTMGLNFGIDFRGGTTIRTEST 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEK------NFLVRLQYQPGDSVAQTRVLEMVKK 640
           +PVD+   R+ L+ L++GDIS                +VR+  Q          +  V+ 
Sbjct: 61  QPVDVGAYRTALQGLELGDISITEVFDPGFREDQHVAMVRIGAQDDTQSITPEQIATVEA 120

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +  + P  T  + E VGPK+S ELI   I  V  +   +  YIW+RF+W FA+G++  L
Sbjct: 121 ALQTVDPTITFPSVESVGPKVSSELIWSAITAVAAACAGIAFYIWLRFEWQFAVGSVAAL 180

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           + D+  T+G FALF I F+LT VAA+LT++GYS+ND VVV+DR+R+N+  Y  S+  RD+
Sbjct: 181 VHDVLVTIGVFALFQIRFDLTTVAALLTVLGYSINDTVVVFDRLRENLVKY-KSMPLRDV 239

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ S+NETL R++ T M   I++  + V+GG VI  F   + FG+V+   SSI++A  I+
Sbjct: 240 MNLSVNETLSRTLMTLMTTLIALSALLVFGGDVIRGFVFAITFGVVIGTYSSIYMAKNIV 299

Query: 821 LFIYDWRAKNAR 832
           L++   R    +
Sbjct: 300 LYLGVDRGGPKK 311


>gi|324009166|gb|EGB78385.1| putative ATP synthase F0, A subunit [Escherichia coli MS 57-2]
          Length = 1037

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLSEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|300817774|ref|ZP_07097989.1| putative ATP synthase F0, A subunit [Escherichia coli MS 107-1]
 gi|300529762|gb|EFK50824.1| putative ATP synthase F0, A subunit [Escherichia coli MS 107-1]
          Length = 1037

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATIGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|224826518|ref|ZP_03699619.1| protein-export membrane protein SecF [Lutiella nitroferrum 2002]
 gi|224601119|gb|EEG07301.1| protein-export membrane protein SecF [Lutiella nitroferrum 2002]
          Length = 311

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 164/299 (54%), Gaps = 3/299 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  + ++  LF  GLN+ ++F GG  + V   +  +
Sbjct: 1   MELFRIKRDIPFMSYGRLTTTISLVTFLLAVFFLFAKGLNFSVEFTGGTVMEVQYRQAAN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +R  +++L+ G+ + Q+    ++ L+RL  + G S AQ  + E V   +    P   
Sbjct: 61  LNDIRDRVDALKFGEATVQSLGTSRDVLIRLPSRQGVSSAQ--LSERVMGTLKAADPAVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP +  EL+  G+  VII  + +++Y+ +RF+W FA+ AI   + D+   LG 
Sbjct: 119 LRKVEFVGPSVGEELVTHGLTAVIIVCLGIMLYLALRFEWRFAVAAIIANMHDVVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769
           FA F  EF+LT +A VL ++GYSVN+ VVV+DR+R+N +     + +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENFRKAAMRNKNVSEIIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T       VL M V+GG  +  FAI +  GIV    SS+ +A+PI L++   R 
Sbjct: 239 SRTLITHGCTEAMVLSMLVFGGPALHGFAIALTIGIVFGIYSSVLVASPIALWLGVARE 297


>gi|323941275|gb|EGB37460.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E482]
          Length = 1037

 Score =  203 bits (516), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|312973296|ref|ZP_07787468.1| AcrB/AcrD/AcrF family protein [Escherichia coli 1827-70]
 gi|310331891|gb|EFP99126.1| AcrB/AcrD/AcrF family protein [Escherichia coli 1827-70]
          Length = 1037

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|309794492|ref|ZP_07688915.1| putative ATP synthase F0, A subunit [Escherichia coli MS 145-7]
 gi|308121948|gb|EFO59210.1| putative ATP synthase F0, A subunit [Escherichia coli MS 145-7]
          Length = 1037

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|218705968|ref|YP_002413487.1| aminoglycoside/multidrug efflux system [Escherichia coli UMN026]
 gi|293405905|ref|ZP_06649897.1| multidrug efflux protein [Escherichia coli FVEC1412]
 gi|298381653|ref|ZP_06991252.1| multidrug efflux protein [Escherichia coli FVEC1302]
 gi|300897656|ref|ZP_07116058.1| putative ATP synthase F0, A subunit [Escherichia coli MS 198-1]
 gi|218433065|emb|CAR13960.1| aminoglycoside/multidrug efflux system [Escherichia coli UMN026]
 gi|291428113|gb|EFF01140.1| multidrug efflux protein [Escherichia coli FVEC1412]
 gi|298279095|gb|EFI20609.1| multidrug efflux protein [Escherichia coli FVEC1302]
 gi|300358605|gb|EFJ74475.1| putative ATP synthase F0, A subunit [Escherichia coli MS 198-1]
          Length = 1037

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|134093587|ref|YP_001098662.1| preprotein translocase subunit SecF [Herminiimonas arsenicoxydans]
          Length = 302

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 89/291 (30%), Positives = 157/291 (53%), Gaps = 3/291 (1%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           MR       IS+L  + ++  L   GL+  I+F GG  + +   +P ++  VR+ L  L 
Sbjct: 1   MRHALIFNVISVLTFVAAVFFLVHKGLHLSIEFTGGTVMEITYPKPANIEGVRTKLGELG 60

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             D+  Q+F   ++ L+RL  Q   + AQ  V E V   +       +++  E VGP++ 
Sbjct: 61  YTDMQVQSFGTAQDVLIRLPVQQNVNTAQ--VSERVMTALKAQDETVSLKRVEFVGPQVG 118

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            EL   G++ + +  I ++IY+ IRF+W +A+ AI   + D+   LGFFA F  EF+LT 
Sbjct: 119 EELTHDGLMAMGMLVIGVMIYLAIRFEWKYAVAAIFANLHDVVIILGFFAFFQWEFSLTV 178

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRSVYTSMAAFI 781
           +A +L ++GYSVN+ V+V+DR+R+  +      ++  D+++ +I  T+ R++ T  +  +
Sbjct: 179 LAGILAVLGYSVNESVIVFDRVRETFRDRKHGKMAVADVMNHAITGTISRTLITHGSTQL 238

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            VL M   GG  +  FA+ +  GI     SS+F+AA + +++   R    +
Sbjct: 239 MVLSMFFLGGPTLHYFALALTIGICFGIYSSVFVAAALAMWLGVKREDLIK 289


>gi|310821444|ref|YP_003953802.1| rnd multidrug efflux transporter [Stigmatella aurantiaca DW4/3-1]
 gi|309394516|gb|ADO71975.1| RND multidrug efflux transporter [Stigmatella aurantiaca DW4/3-1]
          Length = 1047

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 78/617 (12%), Positives = 172/617 (27%), Gaps = 46/617 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   ++  +GL+       P   + ++P   P               + +   
Sbjct: 8   RRPVFAAVCSIVLTLVGLIAI-----PTLPISQYPDLAPP-------------QVTVTST 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVT 116
                   ++      L   L   EG+   S        ++IT++F  +R  E  A  V 
Sbjct: 50  YVGASAEVVESAVTIPLEQELNGVEGMRYISSTSANDGTSQITITFEPTRDIEVAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +   +++L     +  +V        ++    +       A   S        D I  
Sbjct: 110 NRVSRASARLPSQVNQTGIVVNKASSQMLLTLGLSSPDNRYDAKFLSNYADVNLKDAIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP+ +     T   +       N        G     + 
Sbjct: 170 VRGVGEVRIFGERKFSMRLWLDPTSMASRGLTPQDVVRALQEQNLQVAAGQVGQPPSSEE 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V     +              +  +    +       R         +      
Sbjct: 230 QPYQMAVRAHGRL-------------IEPEEFGEIVLQRSADGRLVRMKDVGRVELGAEN 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +     +        L     P            A  
Sbjct: 277 YGTIMRFNGKTGVGIAIFQLPTANALDVRDGVVKEMDRLAQQFPPGLEYQTGNDTTLAVR 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S +    T      LV++V+F+ +   +  L+   ++ ++++ T A + L+G ++   +
Sbjct: 337 ASVNEVIHTLIEAIALVILVIFLFLHGWRSVLITALTLPVSLVGTFAFVYLMGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALI 472
           + G+ L  GL VD  I+V E I      K  S   +   G      A   I    +   I
Sbjct: 397 LFGLTLATGLVVDDAIVVIENIERLMAEKGLSPLKAASEGMKEVSGAVVAISIVLVAVFI 456

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM---MIFIIRYKKMKSIDINPLS 529
              +     G   R FA+T+ +S+ +S F A+++  A+   ++     +K         +
Sbjct: 457 PVALFPGTTGSIYRQFALTIAVSVGLSTFCALTLTPALSARLLRHHHGQKWIFFRKVDEA 516

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLAN 586
             +             +   + ++      +  +        G    + +G + + V   
Sbjct: 517 LDWTRDVYGRALHGLLKHPIIILAAFLLCIAGTVALFRAAPTGFIPDEDQGYMMITVQGP 576

Query: 587 RPVDLSVVRSNLESLQI 603
             + L+     L  ++ 
Sbjct: 577 EGMSLAQTEKVLIEVEN 593



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 74/194 (38%), Gaps = 8/194 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + ++ + ++    +   T  +T +       E+I   I  + +  + + +++    
Sbjct: 306 DGVVKEMDRLAQQFPPGLEYQTGNDTTLAVRASVNEVIHTLIEAIALVILVIFLFL---H 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    TL + +  T  F  L G   N   +  +    G  V+D +VV + +    
Sbjct: 363 GWRSVLITALTLPVSLVGTFAFVYLMGFSINTLTLFGLTLATGLVVDDAIVVIENI--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGI 805
            +    +S      + + E  G  V  S+      +P+A++ G    I   FA+ +A  +
Sbjct: 421 LMAEKGLSPLKAASEGMKEVSGAVVAISIVLVAVFIPVALFPGTTGSIYRQFALTIAVSV 480

Query: 806 VVAASSSIFIAAPI 819
            ++   ++ +   +
Sbjct: 481 GLSTFCALTLTPAL 494



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 59/147 (40%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      I ++ L IT  LG     G   ++     ++ L+G +  + +++ +   + +
Sbjct: 890  SFSLPFVIILSVPLAITGALGLQMARGFANDVFCQVGLVMLVGLASKNAILIVE-FAEQL 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +      S  D + ++ +  L   + TS+A  + V+P+      G +   S    +  G+
Sbjct: 949  RE--KGKSTVDAVVEAASVRLRPILMTSIAFLLGVVPLMTASGAGAASRNSLGTAVFGGM 1006

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   +      + + +   R +  R
Sbjct: 1007 LVSTVVNFVFIPGLYVLMQRLRGEVKR 1033


>gi|168181752|ref|ZP_02616416.1| protein-export membrane protein SecF [Clostridium botulinum Bf]
 gi|237796518|ref|YP_002864070.1| preprotein translocase subunit SecF [Clostridium botulinum Ba4 str.
           657]
 gi|182675021|gb|EDT86982.1| protein-export membrane protein SecF [Clostridium botulinum Bf]
 gi|229260816|gb|ACQ51849.1| protein-export membrane protein SecF [Clostridium botulinum Ba4
           str. 657]
          Length = 287

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 146/287 (50%), Gaps = 8/287 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS++  +  +  L   GLNYGIDFKGG  + +   +      V   ++     
Sbjct: 7   KTKIWFSISLIIILTGMFFLMKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ +      N  + ++          ++   VK K         + + + +GP + +E
Sbjct: 67  SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L RK ++ +II+ IAMLIY+ IRF++ F L AI  L+ DI  T+  +A+F +  + + +A
Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFKFGLAAILGLVHDILITISIYAIFKLPVSSSFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           AVLT++GYS+ND +V++DR+R+N K         ++ + SI +T+ RS+ T +    +++
Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANISITQTMSRSINTVLTTLFTIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + V+    I  FA P+  GI+    SSIFI++P+ +        N 
Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTELGNK 285


>gi|16130395|ref|NP_416965.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K-12
           substr. MG1655]
 gi|89109275|ref|AP_003055.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K-12
           substr. W3110]
 gi|170019246|ref|YP_001724200.1| aminoglycoside/multidrug efflux system [Escherichia coli ATCC 8739]
 gi|170082079|ref|YP_001731399.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901633|ref|YP_002927429.1| aminoglycoside/multidrug efflux system [Escherichia coli BW2952]
 gi|253772639|ref|YP_003035470.1| aminoglycoside/multidrug efflux system [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162444|ref|YP_003045552.1| aminoglycoside/multidrug efflux system [Escherichia coli B str.
           REL606]
 gi|260856562|ref|YP_003230453.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia
           coli O26:H11 str. 11368]
 gi|260869157|ref|YP_003235559.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia
           coli O111:H- str. 11128]
 gi|291283689|ref|YP_003500507.1| putative aminoglycoside efflux pump [Escherichia coli O55:H7 str.
           CB9615]
 gi|300930097|ref|ZP_07145522.1| putative ATP synthase F0, A subunit [Escherichia coli MS 187-1]
 gi|300951834|ref|ZP_07165645.1| putative ATP synthase F0, A subunit [Escherichia coli MS 116-1]
 gi|300957182|ref|ZP_07169417.1| putative ATP synthase F0, A subunit [Escherichia coli MS 175-1]
 gi|2506970|sp|P24177|ACRD_ECOLI RecName: Full=Probable aminoglycoside efflux pump; AltName:
           Full=Acriflavine resistance protein D
 gi|1788814|gb|AAC75523.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K-12
           substr. MG1655]
 gi|1799893|dbj|BAA16344.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K12
           substr. W3110]
 gi|169754174|gb|ACA76873.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli ATCC 8739]
 gi|169889914|gb|ACB03621.1| aminoglycoside/multidrug efflux system [Escherichia coli str. K-12
           substr. DH10B]
 gi|209763784|gb|ACI80204.1| aminoglycoside efflux pump [Escherichia coli]
 gi|238859979|gb|ACR61977.1| aminoglycoside/multidrug efflux system [Escherichia coli BW2952]
 gi|242378069|emb|CAQ32840.1| acrD, subunit of AcrAD-TolC multidrug efflux transport system
           [Escherichia coli BL21(DE3)]
 gi|253323683|gb|ACT28285.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974345|gb|ACT40016.1| aminoglycoside/multidrug efflux system [Escherichia coli B str.
           REL606]
 gi|253978512|gb|ACT44182.1| aminoglycoside/multidrug efflux system [Escherichia coli BL21(DE3)]
 gi|257755211|dbj|BAI26713.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia
           coli O26:H11 str. 11368]
 gi|257765513|dbj|BAI37008.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia
           coli O111:H- str. 11128]
 gi|260448452|gb|ACX38874.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli DH1]
 gi|290763562|gb|ADD57523.1| Probable aminoglycoside efflux pump [Escherichia coli O55:H7 str.
           CB9615]
 gi|300316026|gb|EFJ65810.1| putative ATP synthase F0, A subunit [Escherichia coli MS 175-1]
 gi|300448930|gb|EFK12550.1| putative ATP synthase F0, A subunit [Escherichia coli MS 116-1]
 gi|300461987|gb|EFK25480.1| putative ATP synthase F0, A subunit [Escherichia coli MS 187-1]
 gi|309702749|emb|CBJ02078.1| putative multidrug efflux pump [Escherichia coli ETEC H10407]
 gi|315137092|dbj|BAJ44251.1| putative aminoglycoside efflux pump [Escherichia coli DH1]
 gi|320657146|gb|EFX24955.1| aminoglycoside/multidrug efflux system [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320662905|gb|EFX30233.1| aminoglycoside/multidrug efflux system [Escherichia coli O55:H7
           str. USDA 5905]
 gi|323156069|gb|EFZ42228.1| inner membrane protein [Escherichia coli EPECa14]
 gi|323177413|gb|EFZ63001.1| inner membrane protein [Escherichia coli 1180]
 gi|323936361|gb|EGB32651.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E1520]
 gi|323961262|gb|EGB56874.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H489]
 gi|323971011|gb|EGB66260.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli TA007]
 gi|332344288|gb|AEE57622.1| inner membrane protein BpeB [Escherichia coli UMNK88]
          Length = 1037

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|323967913|gb|EGB63325.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli M863]
 gi|323977353|gb|EGB72439.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli TW10509]
 gi|327252119|gb|EGE63791.1| inner membrane protein [Escherichia coli STEC_7v]
          Length = 1037

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKEFNKIKEARVIA 664



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    L G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWLRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|238756081|ref|ZP_04617403.1| Acriflavine resistance protein B [Yersinia ruckeri ATCC 29473]
 gi|238705687|gb|EEP98082.1| Acriflavine resistance protein B [Yersinia ruckeri ATCC 29473]
          Length = 1058

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 69/551 (12%), Positives = 157/551 (28%), Gaps = 46/551 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +  + 
Sbjct: 20  RPIFAWVLAIILCLTGTLAIF-----SLPIEQYPNLAPP-------------NVRISANY 61

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       +TL+F           +V  
Sbjct: 62  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNTGSASVTLTFQAGTNPNEAMQQVQN 121

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + ++++             + +  +     D +   
Sbjct: 122 QLQSAIKKLPQDVQQQGVSVSKSGDSTLMMLAFVSTDGSMDKQDIADYVASNLQDPLSRI 181

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DPS+L     TT  +       N+       G     D+ 
Sbjct: 182 EGVGSVDAFGSQ-YAMRIWLDPSKLNNYRLTTQDVVTAIRSQNSQIAVGQLGGTPSVDNQ 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 241 ALNATMNAQSQL-------------QTPEQFRDITLRVNQDGSLVTLGDVAKIELGAEKY 287

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +      A L           +          
Sbjct: 288 DYLSRFNGQPASGMGIKLASGANELQTDQRVKARIAELTPFFPHGLEAKIAYETTPFVQA 347

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 348 SIKDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTL 407

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +  S   +      +    +    +      + 
Sbjct: 408 FAIVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQIQGALVGIALVLSAVFIP 467

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +     +K +          
Sbjct: 468 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATL-----LKPVTAGHHHGKRG 522

Query: 534 IPDCIAIQFMR 544
                   F R
Sbjct: 523 FFGWFNRMFDR 533



 Score = 86.7 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +   + ++    ++T   P 
Sbjct: 272 VTLGDVAKIELGAEKYDYLSRFNGQPASGMGIKLASGANELQTDQRVKARIAELTPFFPH 331

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 332 GLEAKIAYETTPFVQASIKDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 391

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 392 FAILSAFGFSINTLTLFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSMGQ 449

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 450 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATLL 509

Query: 825 D 825
            
Sbjct: 510 K 510



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 865  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 924

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++    L
Sbjct: 925  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNHKGKDLVEATLEASRLRL 981

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 982  RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1041


>gi|54307941|ref|YP_128961.1| preprotein translocase subunit SecF [Photobacterium profundum SS9]
 gi|46912367|emb|CAG19159.1| Putative preprotein translocase subunit SecF [Photobacterium
           profundum SS9]
          Length = 315

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 167/299 (55%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F L+    AI FMR   +    S++    +I  + T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQLLKVDNAIDFMRWSKFAFVFSLMMIAVAIGTVATKKLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL  +R +LE+   GD   QNF   ++ LVRLQ +  ++  +    +++           
Sbjct: 61  DLLKIRDSLEAAGFGDAIVQNFGTARDVLVRLQPRE-NAKGEVLGNQIIDALKVGTGQSV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +IIS I +L+Y+ +RF+W  A GA+  L  D+  T+G
Sbjct: 120 EMRRIEFVGPNVGDELAEAGGLAIIISLICILLYVSMRFEWRLAAGAVLALAHDVIITIG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+L  +E +LT VAA+LT++GYS+ND +VV+DR+R+N +      +  D+I+ SI +TL
Sbjct: 180 IFSLLEVEVDLTIVAALLTVVGYSLNDTIVVFDRIRENFRKMRKGEAP-DVINNSITQTL 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS      V+ + + GG++I  FA+ +  GI V   SSI++A+ + L +   R 
Sbjct: 239 SRTLITSGTTLFVVVALFMKGGTMIHGFALALLIGITVGTYSSIYVASALALKLGISRE 297


>gi|282857442|ref|ZP_06266675.1| protein-export membrane protein SecF [Pyramidobacter piscolens
           W5455]
 gi|282584727|gb|EFB90062.1| protein-export membrane protein SecF [Pyramidobacter piscolens
           W5455]
          Length = 292

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 89/295 (30%), Positives = 147/295 (49%), Gaps = 3/295 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             + I FMR R   + I+  F + S+ L+   G N GIDF GG  L +     V++  VR
Sbjct: 1   MRLNIPFMRYRKVWLAIAAFFVLGSLGLVAARGFNLGIDFTGGNLLQIEFPEAVEVGQVR 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +  +  G    Q++  +   +                +      +        + N E
Sbjct: 61  EAMAKVGYGSAVIQSYSDKGVMIRLQGSSELTPAELRDKIIKAVDALH--TGSVKLVNFE 118

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
           +VGP +  EL  + I    I+   +L+YI IRF++ FAL ++  L+ D   TLG F+L  
Sbjct: 119 MVGPTVGSELRNQAIFASAIALAGILLYITIRFRFRFALVSVLALVHDTVLTLGLFSLLH 178

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +E  +T +AA+LT IGYS+N+ +V+ DR+R+N +     +    L+D SIN+TL R++ T
Sbjct: 179 VELGMTFIAAILTTIGYSLNNTIVILDRVRENWRTLPK-VGMPQLLDNSINQTLARTINT 237

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           S+  F  VL   +WGG V+  F++ +  GI+V   SS+ +   IL   ++   + 
Sbjct: 238 SLTTFFPVLAFYIWGGPVLAGFSLAIMAGIIVGGFSSVCVTTSILCLWHEISPEK 292


>gi|91211801|ref|YP_541787.1| aminoglycoside/multidrug efflux system [Escherichia coli UTI89]
 gi|117624666|ref|YP_853579.1| aminoglycoside/multidrug efflux system [Escherichia coli APEC O1]
 gi|193064776|ref|ZP_03045854.1| acriflavine resistance protein D [Escherichia coli E22]
 gi|218554993|ref|YP_002387906.1| aminoglycoside/multidrug efflux system [Escherichia coli IAI1]
 gi|218559405|ref|YP_002392318.1| aminoglycoside/multidrug efflux system [Escherichia coli S88]
 gi|218696096|ref|YP_002403763.1| aminoglycoside/multidrug efflux system [Escherichia coli 55989]
 gi|218700926|ref|YP_002408555.1| aminoglycoside/multidrug efflux system [Escherichia coli IAI39]
 gi|237704985|ref|ZP_04535466.1| aminoglycoside/multidrug efflux system [Escherichia sp. 3_2_53FAA]
 gi|256017389|ref|ZP_05431254.1| aminoglycoside/multidrug efflux system [Shigella sp. D9]
 gi|260845101|ref|YP_003222879.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia
           coli O103:H2 str. 12009]
 gi|293410863|ref|ZP_06654439.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415732|ref|ZP_06658375.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           B185]
 gi|300997925|ref|ZP_07181891.1| putative ATP synthase F0, A subunit [Escherichia coli MS 200-1]
 gi|306814453|ref|ZP_07448615.1| aminoglycoside/multidrug efflux system [Escherichia coli NC101]
 gi|331648124|ref|ZP_08349214.1| putative aminoglycoside efflux pump [Escherichia coli M605]
 gi|331653889|ref|ZP_08354890.1| putative aminoglycoside efflux pump [Escherichia coli M718]
 gi|332278388|ref|ZP_08390801.1| aminoglycoside/multidrug efflux system [Shigella sp. D9]
 gi|91073375|gb|ABE08256.1| probable aminoglycoside efflux pump [Escherichia coli UTI89]
 gi|115513790|gb|ABJ01865.1| aminoglycoside/multidrug efflux system [Escherichia coli APEC O1]
 gi|192927659|gb|EDV82275.1| acriflavine resistance protein D [Escherichia coli E22]
 gi|218352828|emb|CAU98616.1| aminoglycoside/multidrug efflux system [Escherichia coli 55989]
 gi|218361761|emb|CAQ99358.1| aminoglycoside/multidrug efflux system [Escherichia coli IAI1]
 gi|218366174|emb|CAR03920.1| aminoglycoside/multidrug efflux system [Escherichia coli S88]
 gi|218370912|emb|CAR18731.1| aminoglycoside/multidrug efflux system [Escherichia coli IAI39]
 gi|226901351|gb|EEH87610.1| aminoglycoside/multidrug efflux system [Escherichia sp. 3_2_53FAA]
 gi|257760248|dbj|BAI31745.1| aminoglycoside/multidrug efflux system protein AcrD [Escherichia
           coli O103:H2 str. 12009]
 gi|281179532|dbj|BAI55862.1| multidrug resistance protein [Escherichia coli SE15]
 gi|291433380|gb|EFF06359.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           B185]
 gi|291471331|gb|EFF13815.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294491975|gb|ADE90731.1| acriflavine resistance protein D [Escherichia coli IHE3034]
 gi|300304096|gb|EFJ58616.1| putative ATP synthase F0, A subunit [Escherichia coli MS 200-1]
 gi|305851847|gb|EFM52299.1| aminoglycoside/multidrug efflux system [Escherichia coli NC101]
 gi|307625967|gb|ADN70271.1| aminoglycoside/multidrug efflux system [Escherichia coli UM146]
 gi|315300445|gb|EFU59675.1| putative ATP synthase F0, A subunit [Escherichia coli MS 16-3]
 gi|320196311|gb|EFW70935.1| putative aminoglycoside efflux pump [Escherichia coli WV_060327]
 gi|323188227|gb|EFZ73520.1| inner membrane protein [Escherichia coli RN587/1]
 gi|323949498|gb|EGB45386.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H252]
 gi|323955718|gb|EGB51476.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H263]
 gi|324118189|gb|EGC12086.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E1167]
 gi|330912251|gb|EGH40761.1| putative aminoglycoside efflux pump [Escherichia coli AA86]
 gi|331042984|gb|EGI15124.1| putative aminoglycoside efflux pump [Escherichia coli M605]
 gi|331048738|gb|EGI20814.1| putative aminoglycoside efflux pump [Escherichia coli M718]
 gi|332100740|gb|EGJ04086.1| aminoglycoside/multidrug efflux system [Shigella sp. D9]
          Length = 1037

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|301023820|ref|ZP_07187555.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           196-1]
 gi|299880693|gb|EFI88904.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           196-1]
          Length = 1037

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKGVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|256021845|ref|ZP_05435710.1| aminoglycoside/multidrug efflux system [Escherichia sp. 4_1_40B]
          Length = 1037

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|189499012|ref|YP_001958482.1| preprotein translocase subunit SecF [Chlorobium phaeobacteroides
           BS1]
 gi|189494453|gb|ACE03001.1| protein-export membrane protein SecF [Chlorobium phaeobacteroides
           BS1]
          Length = 308

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 152/309 (49%), Gaps = 11/309 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             +     + F++ R     IS+   +  +  LF  GLN+GIDFKGG ++ +     V +
Sbjct: 1   MQLIHKTNVDFLKNRKIAYVISLTLMLAGVLSLFVKGLNFGIDFKGGTEVVLRFEEEVTV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             VRS L+   +     +      +  + LQ     ++   + L               +
Sbjct: 61  GEVRSVLKEAGVEGAVKRY---GADRSILLQTAFEGNLNDLKSLVNNALDDRIADNPHEV 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP I+ +L    +  ++ + IA+LIY+ IRF++ FA+ ++  +  D+   LG F
Sbjct: 118 LRIDSVGPSIASDLKWAALKALLGAVIAILIYVGIRFEFSFAVASVMAIFHDVFIVLGLF 177

Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           ++FG       +  +   +AA LT+ GYS+ND VV+YDR+R+N++    S  +    ++S
Sbjct: 178 SIFGGLFDYMPLVIDQGVIAAFLTIAGYSINDTVVIYDRIRENIRSG-KSSEYTSTFNRS 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +NETL R+V TS    + VL +  + G  I  F   +  GIV+   SS+FIAAP++L   
Sbjct: 237 LNETLSRTVITSGTTLVVVLVLFFFAGPAIRGFTFAILLGIVIGTYSSLFIAAPLVLDWQ 296

Query: 825 DWRAKNARI 833
               +  ++
Sbjct: 297 KKTRRPIKL 305


>gi|225025677|ref|ZP_03714869.1| hypothetical protein EIKCOROL_02579 [Eikenella corrodens ATCC
           23834]
 gi|224941570|gb|EEG22779.1| hypothetical protein EIKCOROL_02579 [Eikenella corrodens ATCC
           23834]
          Length = 313

 Score =  203 bits (516), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 165/305 (54%), Gaps = 4/305 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP- 588
             F       I FM        IS++  I ++  L T GLNY ++F GG  + V   +  
Sbjct: 1   MDFFHRLKHDIPFMSYGKITTLISLITFIAAVFFLVTKGLNYSVEFTGGTVIEVQYAKEG 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            D + VR+ L  L++G+   Q+    K  ++RL  +   + AQ  +   V + + +    
Sbjct: 61  ADPNQVRTRLNELKMGEAQVQSLGTNKQLMIRLPNRQDMTSAQ--LSNNVLELLRKDHAD 118

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           ++++  E +GP++  EL+  G++ + +  I ++IY+ +RF+W FA+ AI   + D+   L
Sbjct: 119 ASLRKVEFIGPQVGEELVTHGLLALGMVVIGIIIYLSVRFEWRFAVSAIIANMHDVVVIL 178

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINE 767
           G FALF  EF+LT +A +L ++GYSVN+ VVV+DR+R+N+        +   +ID +I  
Sbjct: 179 GCFALFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENIHKPAMRGKTIPQIIDNAITA 238

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T+ R++ T  +    V+ M V+GG+ +  FAI +  GIV    SS+ +A+P+LLF    R
Sbjct: 239 TMSRTIITHGSTEAMVVSMLVFGGAALHGFAIALTIGIVFGIYSSVLVASPLLLFFGLTR 298

Query: 828 AKNAR 832
               +
Sbjct: 299 ENIHK 303


>gi|332755110|gb|EGJ85475.1| inner membrane protein [Shigella flexneri 4343-70]
 gi|333002072|gb|EGK21638.1| inner membrane protein [Shigella flexneri K-218]
          Length = 1037

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|331684118|ref|ZP_08384714.1| putative aminoglycoside efflux pump [Escherichia coli H299]
 gi|331079070|gb|EGI50272.1| putative aminoglycoside efflux pump [Escherichia coli H299]
          Length = 1037

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|253990873|ref|YP_003042229.1| Acridine efflux pump [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253782323|emb|CAQ85487.1| Acridine efflux pump [Photorhabdus asymbiotica]
          Length = 1049

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/692 (10%), Positives = 182/692 (26%), Gaps = 43/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIITMLAGLLAIM-----KLPVAQYPTIAPPAI---------SISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +     N  ITL+F      +    +V   LQ 
Sbjct: 54  ATTVQNTVTQVIEQNMNGIDNLVYMSSNSDSAGNMNITLTFEAGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    +       + +  +     D +       
Sbjct: 114 AMPLLPQEVQQQGIHVDKSTNAFLMVAGFTSEDGSMSQEDIADYVGANVKDPLSRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    +P +L     TT  +       NN       G            
Sbjct: 174 DAMLFGNQ-YAMRIWLNPDKLINYKMTTLDVINAIKAQNNQIAAGQLGGTPPVPGQRLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 SIIAQTRLT-------------SPEEFSKILLRVNTDGSQVRLKDVAKVELGSESYNLIG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +        +          +           S   
Sbjct: 280 RFNGKPAAGIGIKLGTGANALDTSKAVKEALKNMEPFFPHGLKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++  +V
Sbjct: 340 VVKTLIEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +  S +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPKEATKKSMGQIQSALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++++S+  A+ +  A+   +           +       +   
Sbjct: 460 GGSTGAIYRQFSITIVSAMVLSVLVALILTPALCASMLKPIAKGSHGKQTGIFGWFNRLF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + V   +L +  ++            + +G +   V    
Sbjct: 520 DKSTHHYTDSVGRILRNTGRYLVIYVLLVAGMAVMFTRLPSSFLPEEDQGVLLTMVQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +     + +       F V      G           +K        
Sbjct: 580 GATQEQTQKVLDEVNHYFSTEEKDRVVSVFTVSGFGFSGQGQNTGLAFMSLKDWSERPGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            + +           +++    +    + AI 
Sbjct: 640 ENKVPAIVARASAHFQKIKEGMVFAFNVPAIV 671



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  ++  +        +        +++  ++ ++   K +    
Sbjct: 258 SQVRLKDVAKVELGSESYNLIGRFNGKPAAGIGIKLGTGANALDTSKAVKEALKNMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + + + + +++  + +   L     + + + 
Sbjct: 318 PHGLKIVYPYDTTPFVKISIHEVVKTLIEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFAILAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  +M      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 436 GQIQSALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 84/280 (30%), Gaps = 7/280 (2%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F                          +         V  S    +     ++ +   E+
Sbjct: 761  FIDRGRVKKVYIQSEAPYRMLPSDIYKLYVRNKQGEMVPFSAFADMSKEPWTYGSPRLER 820

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-I 674
               +      G++       + +         L      +  G      L       +  
Sbjct: 821  YNGLPSMEILGEAAPGKSTGDAMALMEELASQLPNGIGFDWTGMSYQERLSGNQAPALYA 880

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +S I + + +   ++ W      +  + L I   L      G++ ++     +LT IG S
Sbjct: 881  LSLIVVFLCLAALYESWSIPFSVMLVVPLGIVGALLATTFRGLDNDVYFKVGLLTTIGLS 940

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ +  +  M+         +    ++   L   + TS+A  + V+P+ +    G
Sbjct: 941  AKNAILIVEFAKDLMEKEGKG--LIEATLDAVRMRLRPILMTSLAFMLGVIPLVLSNGAG 998

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                 +    +  G++ A S +IF      + I    +K 
Sbjct: 999  SGSQNAVGTGVLGGMIAATSLAIFFVPVFFVVIKRRFSKK 1038


>gi|215487773|ref|YP_002330204.1| aminoglycoside/multidrug efflux system [Escherichia coli O127:H6
           str. E2348/69]
 gi|215265845|emb|CAS10254.1| aminoglycoside/multidrug efflux system [Escherichia coli O127:H6
           str. E2348/69]
          Length = 1037

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G   + +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGLHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|301046354|ref|ZP_07193516.1| putative ATP synthase F0, A subunit [Escherichia coli MS 185-1]
 gi|300301671|gb|EFJ58056.1| putative ATP synthase F0, A subunit [Escherichia coli MS 185-1]
          Length = 1037

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNSERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 87/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PM  +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++        +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESRSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|218690596|ref|YP_002398808.1| aminoglycoside/multidrug efflux system [Escherichia coli ED1a]
 gi|218428160|emb|CAR08934.1| aminoglycoside/multidrug efflux system [Escherichia coli ED1a]
 gi|222034189|emb|CAP76930.1| aminoglycoside efflux pump [Escherichia coli LF82]
 gi|312947054|gb|ADR27881.1| aminoglycoside/multidrug efflux system [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 1037

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNSERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|121634402|ref|YP_974647.1| preprotein translocase subunit SecF [Neisseria meningitidis FAM18]
 gi|120866108|emb|CAM09846.1| putative protein-export membrane protein [Neisseria meningitidis
           FAM18]
 gi|325127702|gb|EGC50613.1| protein-export membrane protein SecF [Neisseria meningitidis N1568]
 gi|325131939|gb|EGC54639.1| protein-export membrane protein SecF [Neisseria meningitidis M6190]
 gi|325137610|gb|EGC60187.1| protein-export membrane protein SecF [Neisseria meningitidis
           ES14902]
 gi|325203701|gb|ADY99154.1| protein-export membrane protein SecF [Neisseria meningitidis
           M01-240355]
          Length = 311

 Score =  203 bits (516), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L+IGD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +    I ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +       +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298

Query: 830 NAR 832
             +
Sbjct: 299 IGK 301


>gi|90416763|ref|ZP_01224693.1| protein export protein SecD [marine gamma proteobacterium HTCC2207]
 gi|90331516|gb|EAS46752.1| protein export protein SecD [marine gamma proteobacterium HTCC2207]
          Length = 614

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 160/523 (30%), Positives = 271/523 (51%), Gaps = 40/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDL GG H +LEVD    +   L+   +++++ L++E I
Sbjct: 105 NLAPTTPDWLRDLGGMPMKLGLDLSGGVHFLLEVDLASALATRLESDLEDVKTALREERI 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S     N+I   F D+         +   L+        D +           + + 
Sbjct: 165 RYRSFELSNNQIVGQFRDTEEVARAKALIRANLR--------DLQPQSQTGQNPLTLVLK 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS     ++  +AI+Q++  +R R++++G+SE  + R G +RI+++LPG QD +  ++++
Sbjct: 217 LSDIASREIEDNAIKQNLTSLRNRVNELGVSEPMVSRQGKNRIVVELPGVQDTAEAKRII 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F         +             G    +E K  I+G ++  A A+FD    
Sbjct: 277 GKTANLEFRLEAS---GRVGEMFDFRDPKGQGPNARLESKTVITGENVTDARASFDENG- 332

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKP------------------------LAVVLDGRV 302
           +P V+I+ D  G  +    TRDNIG+                           V      
Sbjct: 333 RPQVNITLDAKGGWQMGYATRDNIGRRLGVLFIEFKTKLEKSIDENGELVLTPVPFVEES 392

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +    QA    + +I+G      +  L+ +LRAG+L   + IVEER +G  LG+D+I 
Sbjct: 393 IISLATVQAQLGKQFRITGLE-QRESSELSLLLRAGALAAPMYIVEERTIGPSLGADNIA 451

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G  ++  GL L++LFM+V+Y  +G+ A+ ++ +N++L +A +SLLGATLTLP IAGIVL
Sbjct: 452 LGVKSVAVGLALVLLFMLVVYRGFGVFANIALAMNLVLLVAFMSLLGATLTLPGIAGIVL 511

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+  RIREE     S+  S+  G+ RA+ +I D+NIT LI  ++LF  G 
Sbjct: 512 TVGMAVDANVLIFSRIREELAAGASIQGSISAGYDRAFVSILDANITTLIVALILFLIGS 571

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFA+T+ + IL SMFT+I + R ++  ++  + +K++ I
Sbjct: 572 GPVQGFAVTLSIGILTSMFTSIVMTRGLVNLVVGGRNIKTLWI 614



 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 98/275 (35%), Gaps = 4/275 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           +I         +     +      G + +         +      + +            
Sbjct: 337 NITLDAKGGWQMGYATRDNIGRRLGVLFIEFKTKLEKSIDENGELVLTPVPFVEESIISL 396

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +  Q++      +      +  +   +     I     +GP +  + I  G+  
Sbjct: 397 ATVQAQLGKQFRITGLEQRESSELSLLLRAGALAAPMYIVEERTIGPSLGADNIALGVKS 456

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V +    +L+++ + ++  F + A   L +++   + F +L G    L  +A ++  +G 
Sbjct: 457 VAVGLALVLLFMLVVYR-GFGVFANIALAMNLVLLVAFMSLLGATLTLPGIAGIVLTVGM 515

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +V+  V+++ R+R+ +       S +  I    +      +  ++   I  L + + G  
Sbjct: 516 AVDANVLIFSRIREELAA---GASIQGSISAGYDRAFVSILDANITTLIVALILFLIGSG 572

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  FA+ ++ GI+ +  +SI +   ++  +   R
Sbjct: 573 PVQGFAVTLSIGILTSMFTSIVMTRGLVNLVVGGR 607


>gi|323225486|gb|EGA09717.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
          Length = 995

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 51/122 (41%), Gaps = 4/122 (3%)

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA   G 
Sbjct: 936 SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGG 992

Query: 793 VI 794
            +
Sbjct: 993 RL 994


>gi|21232113|ref|NP_638030.1| multidrug-efflux transporter [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767759|ref|YP_242521.1| multidrug-efflux transporter [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21113860|gb|AAM41954.1| multidrug-efflux transporter [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66573091|gb|AAY48501.1| multidrug-efflux transporter [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 1044

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/688 (10%), Positives = 178/688 (25%), Gaps = 48/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++PS  P               + +  + 
Sbjct: 8   RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPA-------------VAITANY 49

Query: 63  DDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                      +    ++    L        +        ITL+F +    +    +V  
Sbjct: 50  PGASAQTLEDTVTQVIEQKMKGLDNLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L    + L  + ++  +  T      + +     +       + S  +     + I   
Sbjct: 110 KLSLATALLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +                   DP +L     T   +       N        G      + 
Sbjct: 170 QGVGDTTLFGSQYSM-RIWLDPDKLNNFNLTPVDVRAAIQAQNAQVSAGQLGALPAVANQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        I       
Sbjct: 229 QLNATITAQTRL-------------KTAEEFENILLRTRTDGSQVRLRDVARIELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T+               P                
Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L++ G T+   ++
Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     + Q S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEQLSPKEATRKSMDQITGALVGVALVLAAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDIN 526
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +++              +  
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMTLSVLVAMVLTPALCATLLKPGHGMATTGFFGWFNRV 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +     +   + +   ++ ++  +  + T       + +G + + V   
Sbjct: 516 FDRSNGRYQGVVRHMLGKGWRYMIAYVVIVALVVVGFMKTPVGFLPDEDQGTLFVLVQLP 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +   + L+ ++   +  Q       F V      G           ++       
Sbjct: 576 PGATDARTGAVLKQVEHHFLVDQKDSVAGIFAVSGFSFAGTGQNVGFAFVKLRPWDERTG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              ++ +           L    +  V 
Sbjct: 636 KGQSVTDVAAKAGAFFATLRDAQVFAVA 663



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 91/248 (36%), Gaps = 6/248 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                  V L  V       +  +   +        L        +++   R ++   ++
Sbjct: 253 TRTDGSQVRLRDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEE 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
             +  P               R  I + +  ++ + + + + +++  + +   L     +
Sbjct: 313 QEKFFPPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAV 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G  A+FG   N   + A++  IG  V+D +VV + +     +    +S ++ 
Sbjct: 373 PVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEQLSPKEA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             KS+++  G  V  ++      +PMA +GGS       F+I +   + ++   ++ +  
Sbjct: 431 TRKSMDQITGALVGVALVLAAVFVPMAFFGGSTGVIYRQFSITIVSAMTLSVLVAMVLTP 490

Query: 818 PILLFIYD 825
            +   +  
Sbjct: 491 ALCATLLK 498



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 63/170 (37%), Gaps = 9/170 (5%)

Query: 668  KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
             G  G++     +++++    +   W      I  + L +  TL    L     ++    
Sbjct: 866  TGQTGLLYGLSILIVFLCLAALYESWSIPFSVILVVPLGVFGTLVAAVLTWKMNDVYFQV 925

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LT IG +  + +++ +  ++   L+    S      ++    L   + TS+A  + V+
Sbjct: 926  GLLTTIGLASKNAILIVEFAKE---LHEGGKSLVAAALEAARMRLRPILMTSLAFILGVV 982

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+ +    G     +    +  G++     +IF      + +     + A
Sbjct: 983  PLVLTSGAGAGAQHALGTAVIGGMISGTVLAIFFVPLFFVLVRGLFERRA 1032


>gi|332087910|gb|EGI93035.1| inner membrane protein [Shigella boydii 5216-82]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVPQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVTAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDRKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVTAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 65/186 (34%), Gaps = 8/186 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             + E         L       +  IS + + + +   ++ W      +  + L +   L 
Sbjct: 853  FSLEWTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALL 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   +        +    +  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNQKGHDLFEATLHACRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA     G     +    +  G++ A   +I+      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMATSTGAGSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRR 1029

Query: 827  RAKNAR 832
                 R
Sbjct: 1030 FPLKPR 1035


>gi|529013|gb|AAA20584.1| multidrug resistance protein [Escherichia coli]
          Length = 1038

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATGELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   +  + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAEPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGPTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATGELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L       + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAEPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +G   G++   F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGPTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 877  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 936

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 937  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 993

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 994  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1036


>gi|312173142|emb|CBX81397.1| Acriflavine resistance protein F Protein envD [Erwinia amylovora
           ATCC BAA-2158]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 79/689 (11%), Positives = 189/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  +        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGGLAII-----SLPIEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ++L+F      +    +V  
Sbjct: 50  PGASAETLENTVTQVIEQNMTGLDNLMYMSSQSSHTGQATVSLTFEAGTNPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D +   +      + +I++             + S  +     D +   
Sbjct: 110 QLQTALRKLPQDVQSQGVNVNKTGDTNILMVAFVSTDGSMDKQDISDYVASHLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L     TT ++       N+       G     +  
Sbjct: 170 NGVGQVDAYGSQ-YAMRIWLDPNKLINYALTTTEVIDAIKSQNSQVAVGQLGGLPSVERQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRAITLRVNADGSVVTLGQVAQVALGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRYNGMPASGLGIKLASGANELQTDKLVRARLDELSRFFPQGLKAEIAFETSPFVQA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + +  T  +L   G ++   ++
Sbjct: 336 SIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPREATRKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++++S+  AI +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAIILTPALCSTLLKPLARGHHHGRRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     +   W V    L ++ ++  +        ++ +G     V
Sbjct: 516 NRTFNRNAERYKRSVGKMLAKGGRWLVVYLALIAVMALLYIRLPTSFLPLEDRGLFTTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L    + +E ++   ++ +  + +  F        G+     R+   +K    
Sbjct: 576 QLPPGSTLQQTMAVVEKVEHYYLTHEQNNVQSVFATVGAGPGGNGQNVARLFVRLKDWHD 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            I   +T         K  R +    +V 
Sbjct: 636 RIGGDNTSFAIIERATKAFRRINEAKVVA 664



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 86/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + L        + +   +++     +++   P 
Sbjct: 260 VTLGQVAQVALGAEKYDYLSRYNGMPASGLGIKLASGANELQTDKLVRARLDELSRFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +  + + + + +++  + +   L     + + +  T
Sbjct: 320 GLKAEIAFETSPFVQASIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F++ +   +V++   +I +   +
Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAIILTPAL 492



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 82/248 (33%), Gaps = 8/248 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S       +         +   E+          G++         +      +  L 
Sbjct: 791  NASGAMVPFTAFAHSHWENGSPRLERYDGYPALEIVGEAATGVSNGAAMDTMEQLVSQLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                 +  G  +   +       +  +S + + + +   ++ W      +  + L +   
Sbjct: 851  NGIGLQWTGASLQERMTGAQAPALYALSLLVVFLCLAALYESWSIPFSVMLVVPLGVLGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+E ++     +LT++G S  + +++ +   +   + +          ++  +
Sbjct: 911  LIATWLRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---INSRGSELVAATLEASRQ 967

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + TS+A    VLPMA+    G S   +    +  G++ A   +IF      +++ 
Sbjct: 968  RLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTGVLGGMISATVLAIFFVPLFFVWVR 1027

Query: 825  DWRAKNAR 832
                   +
Sbjct: 1028 RRFPLKDK 1035


>gi|329848931|ref|ZP_08263959.1| putative aminoglycoside efflux pump [Asticcacaulis biprosthecum
           C19]
 gi|328843994|gb|EGF93563.1| putative aminoglycoside efflux pump [Asticcacaulis biprosthecum
           C19]
          Length = 1046

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 67/574 (11%), Positives = 158/574 (27%), Gaps = 42/574 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  ++++P                   + ++ + 
Sbjct: 9   RPIFAWVVALVIMLAGALSI-----TRLPVEQYPDIALP-------------QVRVQANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       +TL F      +    +V  
Sbjct: 51  PGASAKTVEDSVTQIIEQGMTGLDRLKYMTAQSSDNGGANVTLVFEAGTDIDVAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q V ++L  D +   +         +++             +    ++    D +   
Sbjct: 111 QIQSVINRLPQDVQAQGVRVNKASNNMLMVFSLYSSDGSLTNADLGDYLVSNVQDTLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L     T A +       N          +   D  
Sbjct: 171 DGVGETNVFGSG-YAMRIWLDPDKLASFNLTPADVITAIRAQNAQVSAGQLAAQPATDDV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    I   +      +      +       
Sbjct: 230 ALNATITSQSRLT-------------TAGEFASIIVKSDTTGATVYLRDVARVELGQQNY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          S     +   T E        L           +   +      
Sbjct: 277 ESFSSLNGKPATGIAISLATGANALKTAELVKAKMEELSESFPSNIEYAIPNDSTDFIKL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T+ +L+  G ++ L ++
Sbjct: 337 SIKEVIKTLIEAIVLVFVVMYLFLQSWRATLIPTIAVPIVLLGTMGILAAFGFSVNLLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +           +    +      V 
Sbjct: 397 FGLVLAIGLLVDDAIVVVENVERVMHEEGLSPKEATRKSMDEITGALVGIGLVLAAMFVP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +   +   +             L+ F  
Sbjct: 457 MAFFGGTQGIIYRQFSITIVSAMTLSVVVALVLTPPLCATL-LRPVNHEKRHKRLNLFDR 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
             +     F RA               I  L  +
Sbjct: 516 FFNGFNRNFDRASRGYRAGVGAMIHKPIRYLLVY 549



 Score = 91.3 bits (224), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 99/257 (38%), Gaps = 9/257 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V       Q  +            +        +++    +++   ++++
Sbjct: 256 TTGATVYLRDVARVELGQQNYESFSSLNGKPATGIAISLATGANALKTAELVKAKMEELS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
           E  P +             +  I++ I  +I + + + + +++    W   L     + +
Sbjct: 316 ESFPSNIEYAIPNDSTDFIKLSIKEVIKTLIEAIVLVFVVMYLFLQSWRATLIPTIAVPI 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T+G  A FG   NL  +  ++  IG  V+D +VV + +     ++   +S ++   
Sbjct: 376 VLLGTMGILAAFGFSVNLLTMFGLVLAIGLLVDDAIVVVENV--ERVMHEEGLSPKEATR 433

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
           KS++E  G  V   +      +PMA +GG   +I   F+I +   + ++   ++ +  P+
Sbjct: 434 KSMDEITGALVGIGLVLAAMFVPMAFFGGTQGIIYRQFSITIVSAMTLSVVVALVLTPPL 493

Query: 820 LLFIYD---WRAKNARI 833
              +        ++ R+
Sbjct: 494 CATLLRPVNHEKRHKRL 510



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 6/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L I   L    L G++ ++     +LT IG S  + +++ +  R  +
Sbjct: 891  SWTIPFAVVLVIPLSILGALLATWLRGLDNDIFFQVGLLTTIGLSSKNAILIVEYAR--L 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +   D   ++    L   + TS A    VLP+A+    G     +    +  G+
Sbjct: 949  LHQERGMPLLDATLEAARIRLRPILMTSFAFTFGVLPLALATGAGSGAQRAIGTGLIGGV 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            + A   +IF   P+   +     K+  +
Sbjct: 1009 LTATFLAIFFV-PLFFMLVQKLFKHDNL 1035


>gi|331673926|ref|ZP_08374689.1| putative aminoglycoside efflux pump [Escherichia coli TA280]
 gi|331069199|gb|EGI40591.1| putative aminoglycoside efflux pump [Escherichia coli TA280]
          Length = 1035

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 75/687 (10%), Positives = 178/687 (25%), Gaps = 49/687 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDI 525
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +K      
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           N +           +  +  R     +  +  +  +  L        ++ +G     V  
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLRLPTSFLPLEDRGMFTTSVQL 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                       +E ++    + +  +    F        G+     R+   +K      
Sbjct: 576 PSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSERD 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVG 672
               T         K   ++    ++ 
Sbjct: 636 SKTGTSFAIIERATKAFNKIKEARVIA 662



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 874  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 933

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 934  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 990

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 991  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1033


>gi|299134928|ref|ZP_07028119.1| protein-export membrane protein SecF [Afipia sp. 1NLS2]
 gi|298589905|gb|EFI50109.1| protein-export membrane protein SecF [Afipia sp. 1NLS2]
          Length = 352

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 118/302 (39%), Positives = 193/302 (63%), Gaps = 6/302 (1%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
              +    ++PD   + FM  R +   IS + SI +I L FTHGLN+GIDFKGG  L + 
Sbjct: 24  YGVIPALRVVPDDTTLHFMDLRRFSFPISAVLSIFAITLYFTHGLNFGIDFKGGTLLEIQ 83

Query: 585 ANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               P DL+ +R++L  L +GD+  Q F G +N L+R+  QPG   AQ   ++ V+  + 
Sbjct: 84  EKSGPADLAKLRTDLGKLGLGDVQLQQFGGPQNVLIRIAEQPGGDAAQQAAVQKVRGAL- 142

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   +  E+VGP++S EL+  G +G++++ + +L+Y+W RF+W FALGA+   + D
Sbjct: 143 --GDAVEYRRVEVVGPRVSGELLAYGTLGLMLAIVGILLYLWFRFEWQFALGAMVANVHD 200

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T+GF ++  I+F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y   +   DL+++
Sbjct: 201 IVLTIGFMSITQIDFDLTSIAALLTILGYSLNDTVVIYDRIRELLRRY-KKMPMEDLLNQ 259

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822
           S+N TL RS+ T +   +++L + ++GG  I SFA  M FG ++V   +SIFIAAP+L++
Sbjct: 260 SVNSTLSRSIITHVTVTLALLALLLFGGKAIHSFAATMMFGVVLVGTYTSIFIAAPMLIY 319

Query: 823 IY 824
           + 
Sbjct: 320 LG 321


>gi|78188011|ref|YP_378349.1| preprotein translocase subunit SecF [Chlorobium chlorochromatii
           CaD3]
 gi|78170210|gb|ABB27306.1| protein translocase subunit secF [Chlorobium chlorochromatii CaD3]
          Length = 310

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 143/302 (47%), Gaps = 11/302 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I       F+ AR     IS++  +  I  L   GLNYGIDF+GG ++ +   + +D+
Sbjct: 1   MRIFHKTNFNFLAARKVAYIISLVLLLVGIGSLALRGLNYGIDFRGGSEVVIRFEKDIDV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S +RS L++  +     Q      +              + + L               I
Sbjct: 61  SHIRSVLDAAGVSGTLKQY---GMDRSFLFSTVFQGDSGELKTLLENALNDRITSNKHEI 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP I+ +L    +  +  +  A+L+Y+  RF+  FA   +  +  DI   LG F
Sbjct: 118 VRIDAVGPSIATDLKWSALKALAGALFAILLYVGFRFEVKFAAAGVVAIFHDIIVVLGLF 177

Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           +L G       +E + + +AA LT+ GYS+ D VVVYDR+R+ ++       +  + ++S
Sbjct: 178 SLLGGVFPFMPLEMDQSIIAAFLTIAGYSITDTVVVYDRIRERIR-NQKPSEYERIFNES 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +N+TL R+V TS    I+VL + ++ G  I  FA  +  GI++   SSIF+AAP++    
Sbjct: 237 MNQTLSRTVITSGTVLIAVLVLFLFAGPAIRGFAFAVFSGILIGTYSSIFVAAPLVFDWL 296

Query: 825 DW 826
             
Sbjct: 297 KR 298


>gi|225075073|ref|ZP_03718272.1| hypothetical protein NEIFLAOT_00072 [Neisseria flavescens
           NRL30031/H210]
 gi|224953557|gb|EEG34766.1| hypothetical protein NEIFLAOT_00072 [Neisseria flavescens
           NRL30031/H210]
          Length = 311

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 163/299 (54%), Gaps = 3/299 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   + VD
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++  R  L++L++GD+  Q     K+ ++RL  + G + AQ  +   V   + +  P   
Sbjct: 61  VNKTRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDNPDVA 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +      ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +  +    +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T  +    V+ M V+GG+ +  F+  +  GIV    SS+ +A+P+LL     R 
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSTALTIGIVFGIYSSVLVASPLLLMFGLSRE 297


>gi|284922415|emb|CBG35502.1| putative multidrug efflux pump [Escherichia coli 042]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSILYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSILYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++     +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVSFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|320200028|gb|EFW74617.1| putative aminoglycoside efflux pump [Escherichia coli EC4100B]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPTKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|260548780|ref|ZP_05823002.1| protein-export membrane protein SecF [Acinetobacter sp. RUH2624]
 gi|260407948|gb|EEX01419.1| protein-export membrane protein SecF [Acinetobacter sp. RUH2624]
          Length = 321

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 4/310 (1%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M  +   P  ++    D   I FM+        SIL ++ SI  + T GLN G+DF GG
Sbjct: 1   MMTKVTQQPSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +   +   +P + S V   L+     D   Q     K+ LVR+  Q         +   +
Sbjct: 61  VSAELNYAQPANQSEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQEVKVE---DLNNAI 117

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K +      + +   + VG ++  EL  +    V ++ I MLIY+ IRF++  A+GA+ 
Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  DI   +G FALF   F+LT +AAVL +IG+S+ND +VV DR+R+N +      + R
Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +++D ++ ETL R+++TSM   + VL M   GG  +  F++ M  G+ V   SSI+I   
Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 297 FALWRGLNRQ 306


>gi|157161929|ref|YP_001459247.1| aminoglycoside/multidrug efflux system [Escherichia coli HS]
 gi|157067609|gb|ABV06864.1| acriflavine resistance protein D [Escherichia coli HS]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGITGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 89/245 (36%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +G   G++   F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGITGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|205351783|ref|YP_002225584.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205271564|emb|CAR36384.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326626819|gb|EGE33162.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 1049

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L +   T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        I           
Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +     P    +           S   
Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + +   I+    +   +         + +G     V   
Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++           ++    +  
Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+      G     +    +  G+V A  
Sbjct: 959  G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVSSSGAGSGAQNAVGTGVLGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|70732296|ref|YP_262052.1| preprotein translocase subunit SecD [Pseudomonas fluorescens Pf-5]
 gi|68346595|gb|AAY94201.1| protein-export membrane protein SecD [Pseudomonas fluorescens Pf-5]
          Length = 622

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 161/526 (30%), Positives = 273/526 (51%), Gaps = 40/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD D  ++  L++Y  +++S L+KE +
Sbjct: 107 NLAQTTPQWLRNLGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKERL 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q+   I L F+D   +E     +          +  D     ++        + 
Sbjct: 167 RYRSLPQLNGAIQLGFSDEDSREQARSLIRKNFND-FDIVPADLNGQPVLR-------LA 218

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 219 MTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 278

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F                   R+ +     +E  + I+G  +  A A +D    
Sbjct: 279 GKTANLEFRLAAEP-GASKATSESFEFREGNRPPAQIERGLIITGDQVTDAQAGYDEHG- 336

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL---------------------------AVVLD 299
           +P V+I  D  G       TR N+G+ +                               +
Sbjct: 337 RPQVNIKLDGHGGELMNRSTRSNVGRSMAVIFIEQKPITTYTKQVVDGVEKDVPVQAFKE 396

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            + + +    Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 397 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 456

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+I +Y  +G++A  ++ LN++L LAL+SLLGATLTLP IAG
Sbjct: 457 NITKGIDASLWGMLFVSLFIIAIYRFFGVIATVALALNMVLLLALMSLLGATLTLPGIAG 516

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     +V  +++ GF RA++ I DSN+T L+   +LF 
Sbjct: 517 IVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFA 576

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 577 MGTGPVKGFAVTMSLGIFTSMFTAIWLTRAMVNLIFGGRDFKKLWI 622



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + V   V +         +    +    ++ L       G +         +  +  
Sbjct: 376 TYTKQVVDGVEKDVPVQAFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAG 435

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +           +GP +  + I KGI   +   + + ++I   +++ F + A   L L+
Sbjct: 436 GLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYRF-FGVIATVALALN 494

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I++
Sbjct: 495 MVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMTVQRAINE 551

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LF 822
                    + +++   +    +   G   +  FA+ M+ GI  +  ++I++   ++ L 
Sbjct: 552 GFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIWLTRAMVNLI 611

Query: 823 IYDWRAKN 830
                 K 
Sbjct: 612 FGGRDFKK 619



 Score = 46.6 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 39/389 (10%), Positives = 90/389 (23%), Gaps = 34/389 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  IG + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYLLILAVLAIGFIYSAPNLYPDDPAIQVSGASTALQVT-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
            D                      +   S+        L   +   +    D V   L  
Sbjct: 51  LDRASKALTDA----------GINVKASSIAANGKGGLLRLTNKEDQLPAKDVVRKALGD 100

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174
                LN+       +         +    +       +  +  A++  +++    +  +
Sbjct: 101 DYVVALNLAQTTPQWLRNLGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSL 160

Query: 175 GISESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
              E    R     +  I +    E    + R L+              N +      + 
Sbjct: 161 LRKERLRYRSLPQLNGAIQLGFSDEDSREQARSLIRKNFNDFDIVPADLNGQPVLRLAMT 220

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             + ++  +Y ++  +      +N           +    I  +  G +   E  R    
Sbjct: 221 PAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGK 280

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                        A          +        IE   I+       +          + 
Sbjct: 281 TANLEFRLAAEPGASKATSESFEFREGNRPPAQIERGLIITGDQVTDAQAGYDEHGRPQV 340

Query: 352 VGADLGSDSIYKGTCA-IVAGLVLIVLFM 379
                G              G  + V+F+
Sbjct: 341 NIKLDGHGGELMNRSTRSNVGRSMAVIFI 369


>gi|26248839|ref|NP_754879.1| aminoglycoside/multidrug efflux system [Escherichia coli CFT073]
 gi|300981761|ref|ZP_07175725.1| putative ATP synthase F0, A subunit [Escherichia coli MS 45-1]
 gi|26109245|gb|AAN81447.1|AE016764_129 Probable aminoglycoside efflux pump [Escherichia coli CFT073]
 gi|300408946|gb|EFJ92484.1| putative ATP synthase F0, A subunit [Escherichia coli MS 45-1]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNSERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 87/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PM  +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|315292412|gb|EFU51764.1| putative ATP synthase F0, A subunit [Escherichia coli MS 153-1]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVAKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNSERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 86/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I      ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVAKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PM  +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|315288107|gb|EFU47507.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           110-3]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDGSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|169794703|ref|YP_001712496.1| preprotein translocase subunit SecF [Acinetobacter baumannii AYE]
 gi|213157926|ref|YP_002320724.1| protein-export membrane protein SecF [Acinetobacter baumannii
           AB0057]
 gi|215482290|ref|YP_002324472.1| protein-export membrane protein SecF [Acinetobacter baumannii
           AB307-0294]
 gi|301347240|ref|ZP_07227981.1| preprotein translocase subunit SecF [Acinetobacter baumannii AB056]
 gi|301511794|ref|ZP_07237031.1| preprotein translocase subunit SecF [Acinetobacter baumannii AB058]
 gi|301595292|ref|ZP_07240300.1| preprotein translocase subunit SecF [Acinetobacter baumannii AB059]
 gi|332852196|ref|ZP_08434001.1| export membrane protein SecF [Acinetobacter baumannii 6013150]
 gi|332868164|ref|ZP_08438043.1| export membrane protein SecF [Acinetobacter baumannii 6013113]
 gi|169147630|emb|CAM85493.1| preprotein translocase, IISP family, membrane subunit
           [Acinetobacter baumannii AYE]
 gi|213057086|gb|ACJ41988.1| protein-export membrane protein SecF [Acinetobacter baumannii
           AB0057]
 gi|213985750|gb|ACJ56049.1| protein-export membrane protein SecF [Acinetobacter baumannii
           AB307-0294]
 gi|332729326|gb|EGJ60666.1| export membrane protein SecF [Acinetobacter baumannii 6013150]
 gi|332733508|gb|EGJ64676.1| export membrane protein SecF [Acinetobacter baumannii 6013113]
          Length = 321

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 4/310 (1%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M  +   P  ++    D   I FM+        SIL ++ SI  + T GLN G+DF GG
Sbjct: 1   MMTKVTQQPSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +   +   +P + + V   L+     D   Q     K+ LVR+  Q         +   +
Sbjct: 61  VSAELNYAQPANQAEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQDIKVE---DLNNAI 117

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K +      + +   + VG ++  EL  +    V ++ I MLIY+ IRF++  A+GA+ 
Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVI 177

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  DI   +G FALF   F+LT +AAVL +IG+S+ND +VV DR+R+N +      + R
Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +++D ++ ETL R+++TSM   + VL M   GG  +  F++ M  G+ V   SSI+I   
Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 297 FALWRGLNRQ 306


>gi|237730184|ref|ZP_04560665.1| multidrug transporter acriflavin resistance protein F [Citrobacter
           sp. 30_2]
 gi|226908790|gb|EEH94708.1| multidrug transporter acriflavin resistance protein F [Citrobacter
           sp. 30_2]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/684 (10%), Positives = 187/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------AISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPQTTQDDISDYVASNVKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G      +    
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPNQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNSDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T          L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTANAIKAKLVELQPFFPQGMKVVYPYDTTPFVTISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIVLVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++      + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDHLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526
           FGG      R F+IT+  ++ +S+  A+ +  A+   +           R       +  
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKRSGFFGWFNAK 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    + ++    +   + V   I+    ++  +         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRKTGRYLVVYLIIVIGMAVLFMRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 AGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERSG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             + +++      +   ++    +
Sbjct: 639 NENNVESIIARATRAFSQIRDGLV 662



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 78/203 (38%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    L  ++    + + +    +T         E+++     +++  + M +++ 
Sbjct: 301 DTANAIKAKLVELQPFFPQGMKVVYPYDTTPFVTISIHEVVKTLFEAIVLVFLVMYLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T    A FG   N   +  ++  IG  V+D +VV + + 
Sbjct: 361 ---NIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +  ++  +KS+++  G  V  +M      +PMA +GGS       F+I + 
Sbjct: 417 -ERVMMEDHLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             + ++   ++ +   +   +  
Sbjct: 476 SAMALSVLVALILTPALCATLLK 498



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +    +    L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMALMESLAEKLPNGIGHDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGMNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|53726173|ref|YP_103939.1| preprotein translocase subunit SecF [Burkholderia mallei ATCC
           23344]
 gi|121601113|ref|YP_991651.1| preprotein translocase subunit SecF [Burkholderia mallei SAVP1]
 gi|124385393|ref|YP_001027147.1| preprotein translocase subunit SecF [Burkholderia mallei NCTC
           10229]
 gi|126451077|ref|YP_001082096.1| preprotein translocase subunit SecF [Burkholderia mallei NCTC
           10247]
 gi|167000540|ref|ZP_02266352.1| protein-export membrane protein SecF [Burkholderia mallei PRL-20]
 gi|238562007|ref|ZP_00441101.2| protein-export membrane protein SecF [Burkholderia mallei GB8 horse
           4]
 gi|254178913|ref|ZP_04885567.1| protein-export membrane protein SecF [Burkholderia mallei ATCC
           10399]
 gi|254207994|ref|ZP_04914344.1| protein-export membrane protein SecF [Burkholderia mallei JHU]
 gi|254355864|ref|ZP_04972142.1| protein-export membrane protein SecF [Burkholderia mallei
           2002721280]
 gi|52429596|gb|AAU50189.1| protein-export membrane protein SecF [Burkholderia mallei ATCC
           23344]
 gi|121229923|gb|ABM52441.1| protein-export membrane protein SecF [Burkholderia mallei SAVP1]
 gi|124293413|gb|ABN02682.1| protein-export membrane protein SecF [Burkholderia mallei NCTC
           10229]
 gi|126243947|gb|ABO07040.1| protein-export membrane protein SecF [Burkholderia mallei NCTC
           10247]
 gi|147751888|gb|EDK58955.1| protein-export membrane protein SecF [Burkholderia mallei JHU]
 gi|148024839|gb|EDK83017.1| protein-export membrane protein SecF [Burkholderia mallei
           2002721280]
 gi|160694827|gb|EDP84835.1| protein-export membrane protein SecF [Burkholderia mallei ATCC
           10399]
 gi|238523481|gb|EEP86919.1| protein-export membrane protein SecF [Burkholderia mallei GB8 horse
           4]
 gi|243063594|gb|EES45780.1| protein-export membrane protein SecF [Burkholderia mallei PRL-20]
          Length = 313

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 156/302 (51%), Gaps = 6/302 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       +S++  + ++  LF  GL+  ++F GG  + V   +   
Sbjct: 1   MEFFRIRKDIPFMRHALVFNVVSLVTFLSAVFFLFHRGLHLSVEFTGGTVIEVQYQQAAQ 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR+ L      D   QNF   +N L+RL  + G + AQ    + V   +        
Sbjct: 61  LEPVRATL---GYADSQVQNFGTSRNVLIRLPLKQGLTSAQQS--DQVMAALKAQNADVA 115

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +Q  E VGP++ REL   G++ +    I ++IY+  RF+W +A+  I   + D+   LGF
Sbjct: 116 LQRVEFVGPQVGRELATDGLLALACVVIGIVIYLSFRFEWKYAVAGIIANLHDVVIILGF 175

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R+  +     ++ +++I+ +I  T+ 
Sbjct: 176 FAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIRETFRR-ERKMTVQEVINHAITSTMS 234

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI+    SS+F+A  + +++   R   
Sbjct: 235 RTIITHTSTEMMVLSMFFFGGPTLHYFALALTVGIMFGIYSSVFVAGSLAMWLGIKREDL 294

Query: 831 AR 832
            +
Sbjct: 295 VK 296


>gi|110806402|ref|YP_689922.1| aminoglycoside/multidrug efflux system [Shigella flexneri 5 str.
           8401]
 gi|110615950|gb|ABF04617.1| Probable aminoglycoside efflux pump [Shigella flexneri 5 str. 8401]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQSVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    +  +E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRVLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|161504349|ref|YP_001571461.1| hypothetical protein SARI_02459 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160865696|gb|ABX22319.1| hypothetical protein SARI_02459 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1049

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVAANMKDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L +   T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPIDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        I           
Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +     P    +           S   
Sbjct: 280 QFNGQPASGLGIKLATGANALDTAAAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEEKKGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + +   I+    +   +         + +G     V   
Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++           ++    +  
Sbjct: 640 DENKVEAITQRATAAFSQIKDAMVFA 665



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  Q      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKIELGGENYDVIAQFNGQPASGLGIKLATGANALDTAAAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEELASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|193068337|ref|ZP_03049300.1| acriflavine resistance protein D [Escherichia coli E110019]
 gi|192958289|gb|EDV88729.1| acriflavine resistance protein D [Escherichia coli E110019]
 gi|324020141|gb|EGB89360.1| putative ATP synthase F0, A subunit [Escherichia coli MS 117-3]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDDLAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 87/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++      + +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDDLAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|161869540|ref|YP_001598707.1| preprotein translocase subunit SecF [Neisseria meningitidis 053442]
 gi|161595093|gb|ABX72753.1| protein-export membrane protein [Neisseria meningitidis 053442]
 gi|261393021|emb|CAX50613.1| preprotein translocase SecF subunit [Neisseria meningitidis 8013]
          Length = 311

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L+IGD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +    I ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +       +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGTALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298

Query: 830 NAR 832
             +
Sbjct: 299 IGK 301


>gi|324114687|gb|EGC08655.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia fergusonii B253]
 gi|325498249|gb|EGC96108.1| multidrug efflux system protein [Escherichia fergusonii ECD227]
          Length = 1049

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKYQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|15676512|ref|NP_273652.1| preprotein translocase subunit SecF [Neisseria meningitidis MC58]
 gi|218767744|ref|YP_002342256.1| preprotein translocase subunit SecF [Neisseria meningitidis Z2491]
 gi|254804491|ref|YP_003082712.1| protein-export membrane protein SecF [Neisseria meningitidis
           alpha14]
 gi|7225838|gb|AAF41035.1| protein-export membrane protein SecF [Neisseria meningitidis MC58]
 gi|121051752|emb|CAM08056.1| putative protein-export membrane protein [Neisseria meningitidis
           Z2491]
 gi|254668033|emb|CBA04437.1| protein-export membrane protein SecF [Neisseria meningitidis
           alpha14]
 gi|254670809|emb|CBA07179.1| protein-export membrane protein SecF [Neisseria meningitidis
           alpha153]
 gi|254674007|emb|CBA09791.1| protein-export membrane protein SecF [Neisseria meningitidis
           alpha275]
 gi|308388794|gb|ADO31114.1| putative protein-export membrane protein [Neisseria meningitidis
           alpha710]
 gi|316985262|gb|EFV64213.1| protein-export membrane protein SecF [Neisseria meningitidis
           H44/76]
 gi|319409997|emb|CBY90326.1| preprotein translocase SecF subunit [Neisseria meningitidis WUE
           2594]
 gi|325129754|gb|EGC52563.1| protein-export membrane protein SecF [Neisseria meningitidis
           OX99.30304]
 gi|325133876|gb|EGC56532.1| protein-export membrane protein SecF [Neisseria meningitidis
           M13399]
 gi|325135796|gb|EGC58408.1| protein-export membrane protein SecF [Neisseria meningitidis M0579]
 gi|325139840|gb|EGC62372.1| protein-export membrane protein SecF [Neisseria meningitidis CU385]
 gi|325144005|gb|EGC66315.1| protein-export membrane protein SecF [Neisseria meningitidis
           M01-240013]
 gi|325197821|gb|ADY93277.1| protein-export membrane protein SecF [Neisseria meningitidis G2136]
 gi|325200705|gb|ADY96160.1| protein-export membrane protein SecF [Neisseria meningitidis
           H44/76]
 gi|325202597|gb|ADY98051.1| protein-export membrane protein SecF [Neisseria meningitidis
           M01-240149]
 gi|325206543|gb|ADZ01996.1| protein-export membrane protein SecF [Neisseria meningitidis
           M04-240196]
 gi|325207653|gb|ADZ03105.1| protein-export membrane protein SecF [Neisseria meningitidis
           NZ-05/33]
          Length = 311

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTRGLNFSVEFTGGTVMEVQYQQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L+IGD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +    I ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +       +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298

Query: 830 NAR 832
             +
Sbjct: 299 IGK 301


>gi|319778543|ref|YP_004129456.1| Protein-export membrane protein SecF [Taylorella equigenitalis
           MCE9]
 gi|317108567|gb|ADU91313.1| Protein-export membrane protein SecF [Taylorella equigenitalis
           MCE9]
          Length = 290

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 150/282 (53%), Gaps = 4/282 (1%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
            IS++  + ++  + T G N  I+F GG  +    ++P +L  +R ++  L   D   QN
Sbjct: 1   MISLILFLLAVFFIATKGFNLSIEFTGGTLVEAKYDKPANLESIRKSISGL-YSDYQVQN 59

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
           F   ++ L+RL    G + AQ    E +   +    P   +   E VGP+I  EL   G+
Sbjct: 60  FGSAEDVLIRLPIVEGKNTAQQS--EEILSALKAQDPSVQLTRVEFVGPQIGNELYTNGL 117

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           +      + + +Y+  RF+W F++  +   + D+   LGFFA F  EF+LT +AA+L ++
Sbjct: 118 LAFFFVIVGICLYLAFRFEWKFSISGVVANVHDVIIILGFFAFFQWEFSLTVLAAILAVL 177

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           GYSVN+ VVV DR+R+N +    + S +++I+ SI +T+ R++ T  +  I VL M   G
Sbjct: 178 GYSVNESVVVMDRIRENFRK-QRNSSVKEIINSSITQTISRTIITHGSTQIMVLAMYFLG 236

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G  +  FA+ +  GI     SSIF+AA + +++   R    +
Sbjct: 237 GPSLHYFALALTIGIWFGIYSSIFVAAAVAMWLGIKREDMVK 278


>gi|33596109|ref|NP_883752.1| acriflavine resistance protein B [Bordetella parapertussis 12822]
 gi|33573112|emb|CAE36756.1| acriflavine resistance protein B [Bordetella parapertussis]
          Length = 1059

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/693 (10%), Positives = 186/693 (26%), Gaps = 43/693 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L        + ++P+  P              ++      
Sbjct: 8   RPVFAWVIAIVLMMAGALSIL-----SLPVAQYPNIAPPAI---------SINVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  ITL+F+     +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAV 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L ++ ++  +  T   +  ++++            + +  +     D I  +    
Sbjct: 114 AQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQDPISRTPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L     T + ++      N        G +          
Sbjct: 174 DFQLFGAP-YAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +                      +        +       +I           
Sbjct: 233 TVIGPSRL-------------QTPEAFGRILLKVNSDGSQVRLKDVASIELGAQTYAIDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T +        L+    P    +           S   
Sbjct: 280 YYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     S+    +    +   +  V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMSQITGALIGIAMVLAVVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  S+++S+  AI    A+   +           +       +   
Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGRFNRTF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   + +A    R +   +   ++    +   +         + +G +   V A  
Sbjct: 520 ERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQAPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  ++ +++     +  +       F V      G       +   ++        
Sbjct: 580 GATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                          R  +R     V +    M
Sbjct: 640 EHRAAAVAARANAKFRAELRDAQAAVFVPPAVM 672



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 85/268 (31%), Gaps = 16/268 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +   A   V  S   S   +     ++  N     N   +         
Sbjct: 779  RMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGD 838

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +  K    I    T  + E              +  +  S I + + +   ++
Sbjct: 839  AMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAP----ALYAI--SLIVVFLCLAALYE 892

Query: 690  WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              +++     L++ +       A    G+  ++     +LT IG +  + +++ +  ++ 
Sbjct: 893  -SWSIPTAVMLVVPLGVVGALLATLTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKE- 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y    S  +    +  + L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 951  --HYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGG 1008

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++     +IF   P+   +     K  R
Sbjct: 1009 MLTGTFLAIFFV-PLFFVLTLRLFKVKR 1035



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 82/237 (34%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V S     Q   I         + L        +++   + +      +    
Sbjct: 258 SQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I   +  +  + + + + +++  +     L     + + + 
Sbjct: 318 PPGMDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R    KS+
Sbjct: 378 GTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPRQATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  +  +M   +  +PMA +GGS       F+I +   +V++   +I     +
Sbjct: 436 SQITGALIGIAMVLAVVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPAL 492


>gi|152991207|ref|YP_001356929.1| preprotein translocase subunit SecF [Nitratiruptor sp. SB155-2]
 gi|151423068|dbj|BAF70572.1| preprotein translocase subunit F [Nitratiruptor sp. SB155-2]
          Length = 324

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 165/295 (55%), Gaps = 3/295 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM      + IS +  + S  L+   GLN+GIDF GG  + V  ++PVD++ +R  L+
Sbjct: 10  YNFMGKAKLFMAISTILVLGSWALVVFKGLNFGIDFAGGTIVQVRYDKPVDIAAIRKALK 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             +I   +     G  N  + ++ +      +  + +  +  +        I+  ++VGP
Sbjct: 70  KSEIFQDASVTKFGSDN-EIVIRIKSSTKNLKKDIGDEARAALKGTGNF-EIRRVDMVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++  +I+ I +LIY+ IRF+W FAL ++  L+ D++  +G  +LF +  N
Sbjct: 128 KVGGELREKGLMATVIAIIGILIYVSIRFEWRFALASVLALVHDVSIAMGAISLFNVPVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+LT++GYS+ND ++V+DR+R+ +           +I++SI +TL R+  TS+  
Sbjct: 188 LDILAAILTILGYSLNDTIIVFDRIREGIVESVKLKDLNAVINESITKTLSRTTLTSLTT 247

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY-DWRAKNARI 833
           F  VL + ++GG +I  F+  +  GIVV   SSIFIA+P+L  +  D +   A++
Sbjct: 248 FFVVLTLYLFGGEIIKGFSFTLLVGIVVGTYSSIFIASPMLTILGFDLQKYRAKL 302


>gi|300940290|ref|ZP_07154886.1| putative ATP synthase F0, A subunit [Escherichia coli MS 21-1]
 gi|300454854|gb|EFK18347.1| putative ATP synthase F0, A subunit [Escherichia coli MS 21-1]
          Length = 1037

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAQLVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 89/245 (36%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAQLVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|150021767|ref|YP_001307121.1| protein-export membrane protein SecF [Thermosipho melanesiensis
           BI429]
 gi|149794288|gb|ABR31736.1| protein-export membrane protein SecF [Thermosipho melanesiensis
           BI429]
          Length = 302

 Score =  203 bits (515), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 89/302 (29%), Positives = 159/302 (52%), Gaps = 16/302 (5%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I F+  +   + IS+L  + S+  +F+ G N G++F GG ++ +     VD S VR  ++
Sbjct: 2   IDFIGKKNIFIVISLLLIVASLVSIFSKGFNLGVEFLGGSEIILSVQDNVDESFVRETIK 61

Query: 600 SLQIGDISFQNFD--------GEKNFLVRLQYQPGDSV-------AQTRVLEMVKKKITE 644
           +L     S +           G   F + +  +  +          + +V   + +   E
Sbjct: 62  NLAPEFESARVTQIKSIDDPKGITKFSIVVSPRDENGELRVYSGEEKEQVSNKIVELFKE 121

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
               + +          S+E+       V+ + +A+L+YI +RF++ F +GA+  LI D+
Sbjct: 122 KGKPAKVIGFNETSGYASQEIKNLTWKAVVFTLLAILLYITLRFQFVFGVGAVVALIHDV 181

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             TLGFF+ F  E N+ A+AAVLTLIGYS+ND +VVYDR+R+N+K  T   S  ++++ S
Sbjct: 182 VITLGFFSFFNYELNVAAIAAVLTLIGYSLNDTIVVYDRIRENLKR-TRGKSIENIVNDS 240

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           IN+ + R++ TS+  FI +  + ++ G+ I  FA  M  G ++   SS++IA+P+++   
Sbjct: 241 INQVIKRTINTSLTTFIVIFVLLLFSGNSIKPFAFGMTIGTIIGTYSSLYIASPVVIKWI 300

Query: 825 DW 826
             
Sbjct: 301 KK 302


>gi|24113798|ref|NP_708308.1| aminoglycoside/multidrug efflux system [Shigella flexneri 2a str.
           301]
 gi|30063849|ref|NP_838020.1| aminoglycoside/multidrug efflux system [Shigella flexneri 2a str.
           2457T]
 gi|24052882|gb|AAN44015.1| multidrug resistance protein [Shigella flexneri 2a str. 301]
 gi|30042104|gb|AAP17830.1| multidrug resistance protein [Shigella flexneri 2a str. 2457T]
 gi|281601873|gb|ADA74857.1| putative Cation/multidrug efflux pump [Shigella flexneri 2002017]
 gi|313650925|gb|EFS15325.1| acriflavine resistance protein D [Shigella flexneri 2a str. 2457T]
 gi|332755509|gb|EGJ85873.1| inner membrane protein [Shigella flexneri K-671]
 gi|332756613|gb|EGJ86964.1| inner membrane protein [Shigella flexneri 2747-71]
 gi|332766275|gb|EGJ96485.1| acrD [Shigella flexneri 2930-71]
 gi|333016335|gb|EGK35666.1| inner membrane protein [Shigella flexneri K-304]
          Length = 1037

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLTILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASSANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMLLTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|62179087|ref|YP_215504.1| acridine efflux system protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62126720|gb|AAX64423.1| RND family, acridine efflux pump [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322713548|gb|EFZ05119.1| acridine efflux system protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 1049

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L +   T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        I           
Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +     P    +           S   
Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + +   I+    +   +         + +G     V   
Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEVTDYHLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++           ++    +  
Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|194432053|ref|ZP_03064342.1| acriflavine resistance protein D [Shigella dysenteriae 1012]
 gi|194419582|gb|EDX35662.1| acriflavine resistance protein D [Shigella dysenteriae 1012]
 gi|332089703|gb|EGI94804.1| inner membrane protein [Shigella dysenteriae 155-74]
          Length = 1037

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVPQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  ++ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVSMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATIGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   S+ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVSMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    +  +E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRRLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|332704176|ref|ZP_08424264.1| protein-export membrane protein SecF [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332554325|gb|EGJ51369.1| protein-export membrane protein SecF [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 358

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 100/344 (29%), Positives = 160/344 (46%), Gaps = 49/344 (14%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANR 587
             F +I     I F+  R     IS+   +  +  L   G   YGIDF GG+ + +  ++
Sbjct: 1   MGFQIIKPNTNINFIGIRRIAYIISLTVILAGLGSLLVKGGPQYGIDFAGGMIVQIKFDQ 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IV 646
            VD+  ++S L    +  +  Q+F  E ++   ++    D  + T    +     ++   
Sbjct: 61  QVDVDQLKSALGDTDLPGLVVQSFGQEDDYEFLVRTSASDIPSDTVRKRVSDALSSDLPG 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----------------- 689
               +Q  E+VGPK+  +L  K +  V  + + + IYI  RF+                 
Sbjct: 121 LGFEVQRLEMVGPKVGSDLRSKALEAVFYAVLIIAIYISGRFEQRWFAAIAMAAGLATGI 180

Query: 690 -----------------------------WYFALGAITTLILDITKTLGFFALFGIEFNL 720
                                          FALGA+  L+ D+  T+G F++ G EF+L
Sbjct: 181 YLLKLLGIPMAWLILAAMLITLGLCWFLKLSFALGAVIALVHDVLITVGVFSVLGKEFDL 240

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T +AAVLT+IGYS+ND ++V+DR+R+NM        F   I+ SIN+TL R++ TS    
Sbjct: 241 TTIAAVLTIIGYSLNDTIIVFDRIRENM-KGRAREDFAATINASINQTLSRTILTSGTTL 299

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + +L + ++GG VI  FA+ +  GI     SSIF+AAPILL   
Sbjct: 300 LVILCLWMFGGGVIHDFALALLVGIGTGTFSSIFVAAPILLSFG 343


>gi|332188486|ref|ZP_08390208.1| export membrane protein SecD [Sphingomonas sp. S17]
 gi|332011498|gb|EGI53581.1| export membrane protein SecD [Sphingomonas sp. S17]
          Length = 534

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 196/531 (36%), Positives = 313/531 (58%), Gaps = 14/531 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             W V     +     L+A+P+FLP+S+ +++  A+P  R++LGLDL GGS+L+LE D  
Sbjct: 5   PRWKVASIIALLAALCLLAIPSFLPESVTNKW-GAIPHPRVNLGLDLAGGSYLLLEADTA 63

Query: 64  DFVNGFLQMYSDELRSFLK--KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           D  N  L+   D++ + ++     I +  +     +++    D    +   +++     G
Sbjct: 64  DLANSRLETMRDQVAAEMRRGNPRIDIGDISVRNGQLSFMLRDPTQVDAARERLLSITGG 123

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                    ++  +         +  +Q  ++Q I  A++ + E++R+RID +G  E TI
Sbjct: 124 --GAGMTGQREWDIQVVDTSRFVLKPTQAGLNQAIDTAMKTATEVVRRRIDALGTKEPTI 181

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD---- 237
            + GS+RI++Q+PG QDP +L+ L+G TAK+ F  V    +      G            
Sbjct: 182 LQQGSNRIVVQVPGLQDPQQLKDLIGKTAKLEFKLVDTTANPVDVAKGNAPAGSQVLPYP 241

Query: 238 -----GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                     V+  V ISG  L  A   FD +T+ P V I+FD  G R+F  +T++N GK
Sbjct: 242 GNPLGAPVIAVKRPVIISGDQLIDAQQTFDQQTNAPQVAITFDAQGGRKFARITQENTGK 301

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
           P A++LDG+VL+AP IN+ I  G+A ISGNFT++TA  LA  LR+G LPI L +VEER V
Sbjct: 302 PFAIILDGQVLSAPNINEPILGGRASISGNFTVDTANQLAISLRSGKLPIDLKVVEERTV 361

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G DLG+DSI+ G  A     V +++FM + YG++G+ A+ ++ +NV++ LA++++L ATL
Sbjct: 362 GPDLGADSIHAGILASAIAAVAVIVFMTLTYGRFGIYANIAVVINVLVILAVMAMLNATL 421

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAG VL IG AVD+N+L+NERIREE R+ +SV  S+++G+  A  TIF++N+T  I
Sbjct: 422 TLPGIAGFVLTIGTAVDANVLINERIREERRRGRSVVQSVELGYKEASRTIFEANVTHAI 481

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           + V++   G G V+GFA+ + + I  S+FTA++  R ++   +R +K K+I
Sbjct: 482 SGVIMLVLGSGPVKGFAVVLLIGIATSVFTAVTFTRMLVALWLRREKPKTI 532



 Score = 96.7 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 71/173 (41%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I  GI+   I+A+A+++++ + +   F + A   +++++   L   A+    
Sbjct: 362 GPDLGADSIHAGILASAIAAVAVIVFMTLTYG-RFGIYANIAVVINVLVILAVMAMLNAT 420

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++ +   +  +      S    ++    E        ++
Sbjct: 421 LTLPGIAGFVLTIGTAVDANVLINE---RIREERRRGRSVVQSVELGYKEASRTIFEANV 477

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              IS + M V G   +  FA+ +  GI  +  +++     ++          
Sbjct: 478 THAISGVIMLVLGSGPVKGFAVVLLIGIATSVFTAVTFTRMLVALWLRREKPK 530


>gi|218549870|ref|YP_002383661.1| multidrug efflux system protein [Escherichia fergusonii ATCC 35469]
 gi|218357411|emb|CAQ90050.1| multidrug efflux system protein [Escherichia fergusonii ATCC 35469]
          Length = 1049

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKYQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|325123439|gb|ADY82962.1| preprotein translocase subunit SecF [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 321

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 4/310 (1%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M  +      ++    D   I FM+        SIL ++ SI  + T GLN G+DF GG
Sbjct: 1   MMTKVTQQDSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +   +   +P + S V   L+     D   Q     K+ LVR+  Q         +   +
Sbjct: 61  VSAELNYAQPANQSEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQEVKVE---DLNNAI 117

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K +      + +   + VG ++  EL  +    V ++ I MLIY+ IRF++  A+GA+ 
Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  DI   +G FALF   F+LT +AAVL +IG+S+ND +VV DR+R+N +      + R
Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +++D ++ ETL R+++TSM   + VL M   GG  +  F++ M  G+ V   SSI+I   
Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 297 FALWRGLNRQ 306


>gi|74312995|ref|YP_311414.1| aminoglycoside/multidrug efflux system [Shigella sonnei Ss046]
 gi|73856472|gb|AAZ89179.1| AcrD [Shigella sonnei Ss046]
 gi|323169093|gb|EFZ54770.1| inner membrane protein [Shigella sonnei 53G]
          Length = 1037

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGIGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|254525341|ref|ZP_05137396.1| protein-export membrane protein SecD [Stenotrophomonas sp. SKA14]
 gi|219722932|gb|EED41457.1| protein-export membrane protein SecD [Stenotrophomonas sp. SKA14]
          Length = 618

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 157/518 (30%), Positives = 271/518 (52%), Gaps = 35/518 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDL+GG H VL+VD+   ++  L  Y++++RS L+   I
Sbjct: 103 NLASTVPDWLANLGGRPMVLGLDLQGGVHFVLQVDQKAALDKRLDAYTEDVRSTLRDARI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ +  +   ++       ++ A      L      L  D         +   I++ 
Sbjct: 163 AYQSVERRADNTIVANLSPSAGDDAAQLARTALVKAQPTLGYDV--------SGSRITVT 214

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           + +  I Q+ + AIEQ++  +R R++Q+G++E  IQR G+ R+++QLPG QD +  ++++
Sbjct: 215 IPEAEITQIANGAIEQNINTLRNRVNQLGVAEPIIQRQGADRVVVQLPGVQDTAEAKRMI 274

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATAN 260
           G TA + +  V+  N++     G              G   L+  +V ++G  + GA A 
Sbjct: 275 GATATLEYRAVVDGNAQDAIASGRIPPEAKVYQRRDGGGPVLLNKRVIVTGDQMVGAQAV 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
            D  +  P V ++ + +G +R F+ T  N+ KP+AVV   RV T  V++     G     
Sbjct: 335 TDSNSGSPAVSVTLNNVGGQRMFDFTSANVNKPMAVVYTERVPTVTVVDGQEVRGFKVNE 394

Query: 321 GNFTIE------------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              ++                    A  LA +L++GSL   ++ VEER VG  LG++++ 
Sbjct: 395 EVISVANINGVFGKNFQTTGLQKKEAEDLAKLLKSGSLAAPMDFVEERVVGPSLGAENVK 454

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G  A+V   +  ++F  + Y  +G++   ++  N+++ +A++S+ GAT+TLP  AG+ L
Sbjct: 455 NGMRAVVFAFLFTLVFFSIYYRMFGVITSIAMLFNLLIVVAVMSMFGATMTLPGFAGLAL 514

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ RA  TI D+N+T LI  V LF FG 
Sbjct: 515 SVGLSVDANVLINERIREELRAGVPGKTAIVTGYERASGTILDANLTGLIVGVALFAFGT 574

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G ++GFA+TM + I  SMFTAI++ RA+   I   +K 
Sbjct: 575 GPLKGFALTMIIGIFASMFTAITVSRALATLIYGSRKK 612



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 91/254 (35%), Gaps = 4/254 (1%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + V+    V    V    E                N +    +Q      +    
Sbjct: 363 NVNKPMAVVYTERVPTVTVVDGQEVRGFKVNEEVISVANINGVFGKNFQTTGLQKKEAED 422

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
                K   +          +VGP +  E ++ G+  V+ + +  L++  I ++  F + 
Sbjct: 423 LAKLLKSGSLAAPMDFVEERVVGPSLGAENVKNGMRAVVFAFLFTLVFFSIYYRM-FGVI 481

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
               ++ ++   +   ++FG    L   A +   +G SV+  V++ +R+R+ ++      
Sbjct: 482 TSIAMLFNLLIVVAVMSMFGATMTLPGFAGLALSVGLSVDANVLINERIREELRAGVPGK 541

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           +    I        G  +  ++   I  + +  +G   +  FA+ M  GI  +  ++I +
Sbjct: 542 T---AIVTGYERASGTILDANLTGLIVGVALFAFGTGPLKGFALTMIIGIFASMFTAITV 598

Query: 816 AAPILLFIYDWRAK 829
           +  +   IY  R K
Sbjct: 599 SRALATLIYGSRKK 612



 Score = 45.8 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 26/119 (21%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W  ++  ++  +  L ALPN   +    +  +             RGG     +V
Sbjct: 2   LEFPRWKYVVILIVLALSALYALPNIYQKDPALQITAN------------RGG-----QV 44

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           D             D + + L K G+      +    + +   D + +   +D +   +
Sbjct: 45  D---------DALRDRVMADLNKAGVTTIGAEKEGESLIVRLPDLKAQSAASDALRDTI 94


>gi|198242871|ref|YP_002216548.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|197937387|gb|ACH74720.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 1037

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQPLKVVEKVENYYFTHEKDNIVSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFTNE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|326624303|gb|EGE30648.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 1037

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQPLKVVEKVENYYFTHEKDNIVSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|315452890|ref|YP_004073160.1| protein-export membrane protein SecF [Helicobacter felis ATCC
           49179]
 gi|315131942|emb|CBY82570.1| protein-export membrane protein SecF [Helicobacter felis ATCC
           49179]
          Length = 323

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/294 (26%), Positives = 152/294 (51%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FM    + +  S +  +  + L+F  G N G+DF GG  + V   + V 
Sbjct: 1   MELFKRVRVLDFMSYARFTLPFSGVLVLVCVFLMFFKGFNLGVDFAGGSVVQVRFEKVVS 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ VR  + +     +    F   +  ++++         +  +   + + +  +     
Sbjct: 61  VAKVREVVSTQ-FKGVQVSEFGAPEEMVIKIPLLATQQNTKQDLGVQISQLLHPLGKF-E 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KG++ ++++ IAM++Y+  R++W FAL  +  L  D   T   
Sbjct: 119 IRRLDSVGPRVGDELKEKGVLSLVLAIIAMMLYVSFRYEWRFALAGVLALAHDTLVTAVS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTL+GYS+ND ++++DR+R+ M L         LI+++I+ TL 
Sbjct: 179 VIVFNIDLNLEVIAALLTLLGYSINDTIIIFDRIREGM-LARKQQDLNPLINQAISNTLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  ++ + ++G  ++  F++PM  G +V   SSIF+A  + + + 
Sbjct: 238 RTLLTSLTVFFVLVVLYLFGSKILIGFSLPMLVGTIVGTYSSIFLAPKLAVLLG 291


>gi|153938161|ref|YP_001392340.1| preprotein translocase subunit SecF [Clostridium botulinum F str.
           Langeland]
 gi|152934057|gb|ABS39555.1| protein-export membrane protein SecF [Clostridium botulinum F str.
           Langeland]
 gi|295320332|gb|ADG00710.1| protein-export membrane protein SecF [Clostridium botulinum F str.
           230613]
          Length = 287

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 147/287 (51%), Gaps = 8/287 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS++  +  +  L   GLNYGIDFKGG  + +   +      V   ++     
Sbjct: 7   KTKIWFSISLIIILTGMFFLIKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ +      N  + ++          ++   VK K         + + + +GP + +E
Sbjct: 67  SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L RK ++ +II+ IAMLIY+ IRF++ F L AI  L+ DI  T+  +A+F +  + + +A
Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFKFGLAAILGLVHDILITVSIYAIFKLPVSSSFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           AVLT++GYS+ND +V++DR+R+N K         ++ + SI +T+ RS+ T +    +++
Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANISITQTMSRSINTVLTTLFTIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + V+    I  FA P+  GI+    SSIFI++P+ +     +  N 
Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTQLGNK 285


>gi|304388152|ref|ZP_07370276.1| protein-export membrane protein SecF [Neisseria meningitidis ATCC
           13091]
 gi|304337861|gb|EFM04006.1| protein-export membrane protein SecF [Neisseria meningitidis ATCC
           13091]
          Length = 311

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTRGLNFSVEFTGGTVMEVQYQQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L+IGD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +    I ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +       +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGTALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298

Query: 830 NAR 832
             +
Sbjct: 299 IGK 301


>gi|292900116|ref|YP_003539485.1| aminoglycoside efflux pump [Erwinia amylovora ATCC 49946]
 gi|291199964|emb|CBJ47088.1| probable aminoglycoside efflux pump (acriflavine resistance protei
           D) [Erwinia amylovora ATCC 49946]
          Length = 1037

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 189/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  +        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGGLAII-----SLPIEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ++L+F      +    +V  
Sbjct: 50  PGASAETLENTVTQVIEQNMTGLDNLMYMSSQSSHTGQATVSLTFEAGTNPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D +   +      + +I++             + S  +     D +   
Sbjct: 110 QLQTALRKLPQDVQSQGVNVNKTGDTNILMVAFVSTDGSMDKQDISDYVASHLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L     TT ++       N+       G     +  
Sbjct: 170 NGVGQVDAYGSQ-YAMRIWLDPNKLINYALTTTEVIDAIKSQNSQVAVGQLGGLPSVERQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRAITLRVNADGSVVTLGQVAQVALGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRYNGMPASGLGIKLASGANELQTDKLVRARLDELSRFFPQGLKAEIAFETSPFVQA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + +  T  +L   G ++   ++
Sbjct: 336 SIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPREATRKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++++S+  AI +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAIILTPALCSTLLKPLARGHHHGRRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     +   W +    L ++ ++  +        ++ +G     V
Sbjct: 516 NHTFNRNAERYKRSVGKMLAKGGRWLLVYLALIAVMALLYIRLPTSFLPLEDRGLFTTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L    + +E ++   ++ +  + +  F        G+     R+   +K    
Sbjct: 576 QLPPGSTLQQTMAVVEKVEHYYLTHEQNNVQSVFATVGAGPGGNGQNVARLFVRLKDWHD 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            I   +T         K  R +    +V 
Sbjct: 636 RIGGDNTSFAIIERATKAFRRINEAKVVA 664



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 86/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + L        + +   +++     +++   P 
Sbjct: 260 VTLGQVAQVALGAEKYDYLSRYNGMPASGLGIKLASGANELQTDKLVRARLDELSRFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +  + + + + +++  + +   L     + + +  T
Sbjct: 320 GLKAEIAFETSPFVQASIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F++ +   +V++   +I +   +
Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAIILTPAL 492



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 82/248 (33%), Gaps = 8/248 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S       +         +   E+          G++         +      +  L 
Sbjct: 791  NASGAMVPFTAFAHSHWENGSPRLERYDGYPALEIVGEAATGVSNGAAMDTMEQLVSQLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                 +  G  +   +       +  +S + + + +   ++ W      +  + L +   
Sbjct: 851  NGIGLQWTGASLQERMTGAQAPALYALSLLVVFLCLAALYESWSIPFSVMLVVPLGVLGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+E ++     +LT++G S  + +++ +   +   + +          ++  +
Sbjct: 911  LIATWLRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---INSRGSELVAATLEASRQ 967

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + TS+A    VLPMA+    G S   +    +  G++ A   +IF      +++ 
Sbjct: 968  RLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTGVLGGMISATVLAIFFVPLFFVWVR 1027

Query: 825  DWRAKNAR 832
                   +
Sbjct: 1028 RRFPLKDK 1035


>gi|241760395|ref|ZP_04758490.1| protein-export membrane protein SecF [Neisseria flavescens SK114]
 gi|319637696|ref|ZP_07992462.1| protein-export membrane protein SecF [Neisseria mucosa C102]
 gi|241319273|gb|EER55751.1| protein-export membrane protein SecF [Neisseria flavescens SK114]
 gi|317400851|gb|EFV81506.1| protein-export membrane protein SecF [Neisseria mucosa C102]
          Length = 311

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 165/299 (55%), Gaps = 3/299 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   + VD
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++  R  L++L++GD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKTRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDNPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +      ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +  +    +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R 
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRE 297


>gi|171057035|ref|YP_001789384.1| preprotein translocase subunit SecD [Leptothrix cholodnii SP-6]
 gi|170774480|gb|ACB32619.1| protein-export membrane protein SecD [Leptothrix cholodnii SP-6]
          Length = 633

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 165/512 (32%), Positives = 274/512 (53%), Gaps = 22/512 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N + +S   ++ +AM    + LGLDLRGG H +++VD    +    +  + +LR+
Sbjct: 104 YIVALNLISRSP--QWLTAMRALPMYLGLDLRGGVHFLMQVDMKAALTKKAESLTGDLRA 161

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L+ + I    + +  + + +   D+  +      +             D         T
Sbjct: 162 LLRDKSIRHAGIVRNGDGVEVRLRDAPTQARALALLREQ--------QPDLLWVESTDGT 213

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           E +++  L      +V   A+ Q++  +  RI+++G++E  IQ+ G  R+++QLPG QD 
Sbjct: 214 EFKLAGTLKPEAARKVQEQAVTQNINTLHNRINELGVAEPVIQQQGLDRVVVQLPGVQDV 273

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-------DGNQYLVEDKVEISGI 252
           ++ + ++G TA +    V  +   +  + G   +               +V+ +V ++G 
Sbjct: 274 AKAKDIIGRTATLEVRLVDDSTEAQAALSGGGPVPFGTERYTERGARAIIVKRQVILTGE 333

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL----AVVLDGRVLTAPVI 308
           +L  A A FD    +P V ++ D  GAR F +VTR+NI K +         G V+TAPVI
Sbjct: 334 NLTDAQAGFDENQ-QPAVHLTLDARGARIFRDVTRENINKRMAILLFEKGKGEVVTAPVI 392

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I  G+ QISG+ +   +   A +LRAGSL   + I+EER +G  LG+++I KG  ++
Sbjct: 393 RSEIGGGRVQISGSMSPVESADTALLLRAGSLAAPMEIIEERLIGPSLGAENIAKGFDSV 452

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
           + G V I +FM   Y  +G+ +  S+ +N++L +A+LS++ ATLTLP IA I L +G+A+
Sbjct: 453 LYGFVAIAIFMCCYYLLFGVFSTLSLGVNLLLLVAVLSMMQATLTLPGIAAIALVLGMAI 512

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D+N+L+NER+REE R   S   ++  G+ RA++TI DSN+T LIA + L  FG G VRGF
Sbjct: 513 DANVLINERVREELRAGASPQMAIHTGYERAFATILDSNVTTLIAGLALLAFGSGPVRGF 572

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           A+   L IL SMF+A+   R ++      KK 
Sbjct: 573 AVVHCLGILTSMFSAVMFSRGLVNLWYGRKKK 604



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 87/212 (41%), Gaps = 4/212 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I    ++GP +  E I KG   V+   +A+ 
Sbjct: 401 VQISGSMSPVESADTALLLRAGSLAAPMEIIEERLIGPSLGAENIAKGFDSVLYGFVAIA 460

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++   +   F + +  +L +++   +   ++      L  +AA+  ++G +++  V++ 
Sbjct: 461 IFMCCYY-LLFGVFSTLSLGVNLLLLVAVLSMMQATLTLPGIAAIALVLGMAIDANVLIN 519

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++      S +  I           + +++   I+ L +  +G   +  FA+  
Sbjct: 520 ERVREELRA---GASPQMAIHTGYERAFATILDSNVTTLIAGLALLAFGSGPVRGFAVVH 576

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GI+ +  S++  +  ++   Y  + K  ++
Sbjct: 577 CLGILTSMFSAVMFSRGLVNLWYGRKKKLQKV 608



 Score = 38.5 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 33/120 (27%), Gaps = 25/120 (20%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++ ++   +G L  LPNF  ++                           ++V 
Sbjct: 3   RYPWWKYLILAIAVLVGSLYTLPNFFGEAPA-------------------------VQVS 37

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                          ++  L   G+    ++     +   F D+  +    D V   L  
Sbjct: 38  SGKATVKVDASLVPRVQQALAGAGLSPDFVQLEGLSVRARFGDTDTQLKARDAVVKALNP 97


>gi|310768297|gb|ADP13247.1| Acriflavine resistance protein B [Erwinia sp. Ejp617]
          Length = 1037

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 76/689 (11%), Positives = 189/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  +        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGGLAIV-----SLPIEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TL+F      +    +V  
Sbjct: 50  PGASAETLENTVTQVIEQNMTGLDNLMYMSSQSSHTGQATVTLTFEAGTNPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D +   +      + +I++             + +  +     D +   
Sbjct: 110 QLQTALRKLPQDVQAQGVNVNKTGDTNILMVAFVSTDGSMDKQDIADYVASHLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L     TT ++       N+       G     D  
Sbjct: 170 NGVGQVDAYGSQ-YAMRIWLDPNKLINYALTTTEVVDAIKSQNSQVAVGQLGGLPSVDRQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRAITLKVNADGSVVTLGQVAQVALGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRYNGMAASGLGIKLASGANELQTDKLVRARLDELSRFFPHGLQAEIAFETSPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + +  T  +L   G ++   ++
Sbjct: 336 SIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPRDATRKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCCTLLKPLAMGHHHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +    ++   W V    L ++ ++  +        ++ +G     V
Sbjct: 516 NRTFNHNAERYKRGVGRMLVKGGRWLVVYLALIAVMALLFMRLPTSFLPLEDRGLFTTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L    + +E ++   ++ +  + +  F        G+     R+   +K    
Sbjct: 576 QLPPGSTLQQTMTVVEKVEHYYLTHEQDNVQSVFATVGAGPGGNGQNVARLFVRLKDWQN 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            +   +T         K    +    +V 
Sbjct: 636 RLGSDNTSFAIIDRATKAFSRINEAKVVA 664



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + L        + +   +++     +++   P 
Sbjct: 260 VTLGQVAQVALGAEKYDYLSRYNGMAASGLGIKLASGANELQTDKLVRARLDELSRFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +  + + + + +++  + +   L     + + +  T
Sbjct: 320 GLQAEIAFETSPFVKASIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N   + A++  IG  V+D +VV + +     +    +S RD   KS+ +
Sbjct: 380 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPRDATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +GG+       F++ +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCCTLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 76/212 (35%), Gaps = 8/212 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G+S A       +      +  L      +  G  +   +       +  +S + + + +
Sbjct: 827  GESAAGVSNGAAMDMMEKLVSQLPNGIGLQWTGASLQERMTGAQAPALYALSLLVVFLCL 886

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L    L G+E ++     +LT++G S  + +++ + 
Sbjct: 887  AALYESWSIPFSVMLVVPLGVLGALIATWLRGLENDVYFQVGLLTVVGLSAKNAILIVEF 946

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
              +   + +          ++  + L   + TS+A    VLPMA+    G S   +    
Sbjct: 947  ANE---INSRGSELMAATLEAARQRLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTG 1003

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +  G++ A   +IF      + +        +
Sbjct: 1004 VLGGMISATVLAIFFVPLFFVLVRRRFPLKDK 1035


>gi|238759422|ref|ZP_04620586.1| Acriflavine resistance protein B [Yersinia aldovae ATCC 35236]
 gi|238702319|gb|EEP94872.1| Acriflavine resistance protein B [Yersinia aldovae ATCC 35236]
          Length = 1038

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/685 (11%), Positives = 194/685 (28%), Gaps = 47/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G+L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGVLAI-----STLPIEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAKTLENTVTQVIEQSMTGLDSLLYMSSQSSNSGSASITLTFQAGTDPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + ++++             + +  +     D +   
Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT  +       N+       G     D+ 
Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E      A L           +          
Sbjct: 276 DYLSRFNGQAASGMSIKLASGANELQTDERVKARIAELSPFFPHGLEAKIAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIKDVVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +                  F
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAPGHHHAKRGFFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG----VLANR 587
             + D  A ++ +     +  S  F +  + LL    L +       + L      +A  
Sbjct: 516 NRMFDRNAHRYEKGVARVLHHSARFMLLYLLLLGGLALLFLKLPTSFLPLEDRGVFMAQV 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + +   +     +     ++     + N L              + +  +  ++ +   
Sbjct: 576 QLPVGSTQQQTLKVVENVENYFLTQEQNNVLSVFSTVGSGPGGNGQNVARLFIRLADWDK 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            +   ++     + + +   K I  
Sbjct: 636 RTDSNDSSFAIIERATKAFNKIIEA 660



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 86/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +     ++    +++   P 
Sbjct: 260 VTLGDVAKIEMGAEKYDYLSRFNGQAASGMSIKLASGANELQTDERVKARIAELSPFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  +I + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ +
Sbjct: 380 FAILSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++    L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNGKGKDLVEATLEASRLRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPM +    G     +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFAFGVLPMTISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029


>gi|188990876|ref|YP_001902886.1| RND superfamily export protein [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732636|emb|CAP50830.1| RND superfamily export protein [Xanthomonas campestris pv.
           campestris]
          Length = 1044

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 70/688 (10%), Positives = 178/688 (25%), Gaps = 48/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++PS  P               + +  + 
Sbjct: 8   RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPA-------------VAITANY 49

Query: 63  DDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                      +    ++    L        +        ITL+F +    +    +V  
Sbjct: 50  PGASAQTLEDTVTQVIEQKMKGLDNLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L    + L  + ++  +  T      + +     +       + S  +     + I   
Sbjct: 110 KLSLATALLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +                   DP +L     T   +       N        G      + 
Sbjct: 170 QGVGDTTLFGSQYSM-RIWLDPDKLNNFNLTPVDVRAAIQAQNAQVSAGQLGALPAVANQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        I       
Sbjct: 229 QLNATITAQTRL-------------KTAEEFENILLRTRTDGSQVRLRDVARIELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T+               P                
Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L++ G T+   ++
Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     + Q S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEQLSPKEATRKSMDQITGALVGVALVLAAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDIN 526
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +++              +  
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMTLSVLVAMVLTPALCATLLKPGHGMATTGFFGWFNRV 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +     +   + +   ++ ++  +  + T       + +G + + V   
Sbjct: 516 FDRSNGRYQGVVRHMLGKGWRYMIAYVVIVALVVVGFMKTPVGFLPDEDQGTLFVLVQLP 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +   + L+ ++   +  Q       F V      G           ++       
Sbjct: 576 PGATDARTGAVLKQVEHHFLVDQKDSVAGIFAVSGFSFAGTGQNVGFAFVKLRPWGERTG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              ++ +           L    +  V 
Sbjct: 636 KGQSVTDVAAKAGAFFATLRDAQVFAVA 663



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 91/248 (36%), Gaps = 6/248 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                  V L  V       +  +   +        L        +++   R ++   ++
Sbjct: 253 TRTDGSQVRLRDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEE 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
             +  P               R  I + +  ++ + + + + +++  + +   L     +
Sbjct: 313 QEKFFPPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAV 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G  A+FG   N   + A++  IG  V+D +VV + +     +    +S ++ 
Sbjct: 373 PVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEQLSPKEA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             KS+++  G  V  ++      +PMA +GGS       F+I +   + ++   ++ +  
Sbjct: 431 TRKSMDQITGALVGVALVLAAVFVPMAFFGGSTGVIYRQFSITIVSAMTLSVLVAMVLTP 490

Query: 818 PILLFIYD 825
            +   +  
Sbjct: 491 ALCATLLK 498



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 63/170 (37%), Gaps = 9/170 (5%)

Query: 668  KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
             G  G++     +++++    +   W      I  + L +  TL    L     ++    
Sbjct: 866  TGQTGLLYGLSILIVFLCLAALYESWSIPFSVILVVPLGVFGTLVAAVLTWKMNDVYFQV 925

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LT IG +  + +++ +  ++   L+    S      ++    L   + TS+A  + V+
Sbjct: 926  GLLTTIGLASKNAILIVEFAKE---LHEGGKSLVVAALEAARMRLRPILMTSLAFILGVV 982

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+ +    G     +    +  G++     +IF      + +     + A
Sbjct: 983  PLVLTSGAGAGAQHALGTAVIGGMISGTVLAIFFVPLFFVLVRGLFERRA 1032


>gi|50123051|ref|YP_052218.1| aminoglycoside/multidrug efflux system [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613577|emb|CAG77028.1| probable aminoglycoside efflux pump [Pectobacterium atrosepticum
           SCRI1043]
          Length = 1040

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 80/689 (11%), Positives = 191/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           L+++P   P               + +    
Sbjct: 8   RPIFAWVLAILLSLCGMLAI-----KSLPLEQYPDLAPP-------------SVRITASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q +I L+F      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLMYMSSDSSNTGQARIMLTFEAGTDPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + +I++             + S  +     + I   
Sbjct: 110 QLQSATRKLPQDVQQQGVTVSKTGDTNILMVAFVSTDGSMDKQDISDYVATNIQEPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     TT+ +       N+       G     D+ 
Sbjct: 170 SGVGEVDSYGSQ-YAMRIWLDPAKLMDYSLTTSDVVRAIESQNSQVSVGQVGGVPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSAVTLANVAEVELGAERY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DFLSRFNGQAASGLGVKLASGANELETDKRVRERIEELSHYFPHGLEAKIAFETSPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G +L   ++
Sbjct: 336 SITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGFSLNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQVQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--KKMKSIDINPLSRF 531
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +++   K            F
Sbjct: 456 MAFFGGTTGAIYRQFSITIVTSMILSVLVAMILTPALCATLLKPLAKGQHHGRKGFFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY--------GIDFKGGIQLGV 583
                  ++ + R     +  S  + +  + ++      +          + +G     V
Sbjct: 516 NRSFTRTSLGYERGVGKILVNSGRWLLLYMGIIGIMAFLFFRLPTSFLPQEDRGVFTTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +  ++   ++ +       F        G+     R+   +K    
Sbjct: 576 QLPPGATQQQTLQVVNKIEQYYLTQEKDTVTSVFSTIGSGPGGNGQNVARLFVSLKDWNE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              P S+         K  R++    +  
Sbjct: 636 RTTPESSSFAVIERATKEFRKIKEARVFA 664



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +  D   +      + L        + +   + +    ++++   P 
Sbjct: 260 VTLANVAEVELGAERYDFLSRFNGQAASGLGVKLASGANELETDKRVRERIEELSHYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +  + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAFETSPFVKASITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FAVLYAFGFSLNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +GG+       F+I +   ++++   ++ +   +   + 
Sbjct: 438 VQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSITIVTSMILSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 68/187 (36%), Gaps = 8/187 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G  +   L       +  IS + + + +   ++ W      +  + + +   L 
Sbjct: 853  FGVEWTGMSLQERLSGAQAPALYAISLLVVFLCLAALYESWTVPFSVMLVVPMGVLGALV 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 G+E ++     +LT++G S  + +++ +   +   +        +   ++  + L
Sbjct: 913  ATWARGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---MNQKGKDLVEATLEASRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA     G +   +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVIGGMLAATFLAIFFVPLFFVVVRRR 1029

Query: 827  RAKNARI 833
                 ++
Sbjct: 1030 FPLKEKV 1036


>gi|107099412|ref|ZP_01363330.1| hypothetical protein PaerPA_01000424 [Pseudomonas aeruginosa PACS2]
          Length = 1033

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/680 (10%), Positives = 183/680 (26%), Gaps = 44/680 (6%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           ++  +I   G L  L        ++++P+  P               +       + V  
Sbjct: 1   MIALVIMLAGGLSIL-----SLPVNQYPAIAPPAI---------AVQVSYPGASAETVQD 46

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLN 127
            +    ++  + +              +  IT++F      +    +V   LQ     L 
Sbjct: 47  TVVQVIEQQMNGIDNLRYISSESNSDGSMTITVTFEQGTDPDIAQVQVQNKLQLATPLLP 106

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            + ++  +  T   +  +++             + S  I+    D +  ++         
Sbjct: 107 QEVQRQGIRVTKAVKNFLMVVGVVSTDGSMTKEDLSNYIVSNIQDPLSRTKGVGDFQVFG 166

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                     DP++L     T   +S      N        G             +  K 
Sbjct: 167 SQYSM-RIWLDPAKLNSYQLTPGDVSSAIQAQNVQISSGQLGGLPAVKGQQLNATIIGKT 225

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +                 +    +        +       ++G                
Sbjct: 226 RL-------------QTAEQFENILLKVNPDGSQVRLKDVADVGLGGQDYSINAQFNGSP 272

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
            +          +   T +      A L          +           S      T  
Sbjct: 273 ASGIAIKLATGANALDTAKAIRQTIANLEPFMPQGMKVVYPYDTTPVVSASIHEVVKTLG 332

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+VL IGL 
Sbjct: 333 EAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFSINTLTMFGMVLAIGLL 392

Query: 428 VDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG--- 483
           VD  I+V E +      +  S   +      +    +    +      + + FFGG    
Sbjct: 393 VDDAIVVVENVERVMAEEGLSPREAARKSMGQIQGALVGIAMVLSAVFLPMAFFGGSTGV 452

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDINPLSRFF 532
             R F+IT+  ++ +S+  A+ +  A+   +            +       +   LS   
Sbjct: 453 IYRQFSITIVSAMALSVIVALILTPALCATMLKPIEKGDHGEHKGGFFGWFNRMFLSTTH 512

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +A        + +   ++ +                + +G +   V         
Sbjct: 513 GYERGVASILKHRAPYLLIYVVIVAGMIWMFTRIPTAFLPDEDQGVLFAQVQTPPGSSAE 572

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             +  ++S++   +  ++      F V      G   +      M+K         +++ 
Sbjct: 573 RTQVVVDSMREYLLEKESSSVSSVFTVTGFNFAGRGQSSGMAFIMLKPWEERPGGENSVF 632

Query: 653 NTEIVGPKISRELIRKGIVG 672
                            +  
Sbjct: 633 ELAKRAQMHFFSFKDAMVFA 652



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q   I+ Q      + +        +++   + +      +   +
Sbjct: 245 SQVRLKDVADVGLGGQDYSINAQFNGSPASGIAIKLATGANALDTAKAIRQTIANLEPFM 304

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 305 PQGMKVVYPYDTTPVVSASIHEVVKTLGEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 364

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 365 GTFGVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREAARKSM 422

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      LPMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 423 GQIQGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVIVALILTPAL 479



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +          + G    + ++G     +  +  PG S            K 
Sbjct: 777  VRNDKGEMVPFNAFATGKWEYGSPKLERYNGVPAMEILGEPAPGLSSGDAMAAVEEIVKQ 836

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W      +  + L
Sbjct: 837  LPKGVGYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 893

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L   ++ G+  ++     +LT IG S  + +++ +  ++   L+       +   
Sbjct: 894  GVIGALLATSMRGLSNDVFFQVGLLTTIGLSAKNAILIVEFAKE---LHEQGKGIVEAAI 950

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++    L   V TS+A  + V+P+A+    G     +    +  G+V A   +IF
Sbjct: 951  EACRMRLRPIVMTSLAFILGVVPLAISTGAGSGSQHAIGTGVIGGMVTATVLAIF 1005


>gi|330503889|ref|YP_004380758.1| acriflavin resistance protein [Pseudomonas mendocina NK-01]
 gi|328918175|gb|AEB59006.1| acriflavin resistance protein [Pseudomonas mendocina NK-01]
          Length = 1022

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 73/584 (12%), Positives = 165/584 (28%), Gaps = 39/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++  +GL+        +  +  +P+                  +     
Sbjct: 9   RRPVFATVLSLIVVLLGLMA-----YDRLNVREYPNIDVPIVT---------VQVTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +++ S ++         R    +IT  F   R  +  A+ V   L  
Sbjct: 55  SPEIMESQVAQPVEDVLSGIEGLDFVTSISRAENTQITAQFRLGRSADEAANDVRDRLGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  +  + ++         ++    +       A+E +  + R   D++       
Sbjct: 115 VRSLLPDEVDEPIVQKVEADAQPVIWIAFHSQ--QHSAMEITDLLERVIKDRLQTIPGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     T   +       N          R    S  ++ 
Sbjct: 173 EVQVRGARTFSMRIWLDPEKLAAHNLTVQDVEDALRRQNVEIPAGRIESREREFSVLSET 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +   ++  D+                         
Sbjct: 233 DLRTP--------------------QQFNELILDDSQGYLLRLSDVGRAEIGPRDERSVV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +     +        ++A         V   N      S   
Sbjct: 273 RFNGLPAVTLGLVKQATANPLDISDGLQAAWPEIKALLPDGMKMTVANDNSQFIRESIDN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++++F+ +   +  L+   +I +++I   AL+SL+G T+   ++  +V
Sbjct: 333 VFTTIWEAVALVILIIFIFLRSLRATLIPLVTIPVSLIGAFALMSLMGFTINTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I++ E I            +   G       +    +T       + F  
Sbjct: 393 LAIGLVVDDAIVMLENIHRHIEAGMKPMQAAFKGSREIAFAVIAMTLTLAAVFAPIGFMQ 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA T+  S+L+S F A+++   M   ++R  + +       +      + +
Sbjct: 453 GTTGKLFTEFAWTLAGSVLVSGFVALTLTPMMCAVLLRSHQQEPRHGRVYNLIEGFLNSL 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +  +    +    L     +         +G          
Sbjct: 513 TYSYKHSLERALQAWPLVLGVLLAAFVLCAWLFGGLRSELAPTE 556



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 72/212 (33%), Gaps = 12/212 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S         +K  + + + ++   +      +    +       V +  + + I++   
Sbjct: 296 SDGLQAAWPEIKALLPDGMKMTVANDNSQFIRESIDNVFTTIWEAVALVILIIFIFL--- 352

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  + T+ + +       +L G   N   + A++  IG  V+D +V+ + +   
Sbjct: 353 RSLRATLIPLVTIPVSLIGAFALMSLMGFTINTLTLLAMVLAIGLVVDDAIVMLENIH-- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
            +     +       K   E     +  ++       P+    G+       FA  +A  
Sbjct: 411 -RHIEAGMKPMQAAFKGSREIAFAVIAMTLTLAAVFAPIGFMQGTTGKLFTEFAWTLAGS 469

Query: 805 IVVAASSSIFIAA---PILLFIYDWRAKNARI 833
           ++V+   ++ +      +LL  +    ++ R+
Sbjct: 470 VLVSGFVALTLTPMMCAVLLRSHQQEPRHGRV 501



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 69/166 (41%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++   + + +  +F+ +   L  + ++ L +   L    LFG  +N+ +   ++T
Sbjct: 852  LLIFALALAFIFLVLAAQFESFSDPLIILFSVPLSMAGALLALKLFGGTWNIYSQIGLVT 911

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG      +++ +       L     + R+ + ++  + L   + T+ A  +  LP+A+
Sbjct: 912  LIGLITKHGILIVEFAN---HLLREGKALRESVIEASVQRLRPILMTTGAMVLGSLPLAI 968

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                G        + +  G++V    ++++   + L +  W     
Sbjct: 969  ATGAGAESRQQIGLVIVGGLLVGTFFTLYVIPTLYLLLRRWAPLRK 1014


>gi|15802992|ref|NP_289022.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7
           EDL933]
 gi|168748479|ref|ZP_02773501.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756234|ref|ZP_02781241.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4401]
 gi|168768554|ref|ZP_02793561.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773624|ref|ZP_02798631.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778428|ref|ZP_02803435.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787808|ref|ZP_02812815.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC869]
 gi|168798833|ref|ZP_02823840.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC508]
 gi|195936611|ref|ZP_03081993.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7
           str. EC4024]
 gi|208807883|ref|ZP_03250220.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814105|ref|ZP_03255434.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819992|ref|ZP_03260312.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398035|ref|YP_002271938.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4115]
 gi|254794414|ref|YP_003079251.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7
           str. TW14359]
 gi|261223098|ref|ZP_05937379.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259350|ref|ZP_05951883.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7
           str. FRIK966]
 gi|12516848|gb|AAG57579.1|AE005476_4 sensitivity to acriflavine, integral membrane protein, possible
           efflux pump [Escherichia coli O157:H7 str. EDL933]
 gi|187770716|gb|EDU34560.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017113|gb|EDU55235.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003570|gb|EDU72556.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356565|gb|EDU74984.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362336|gb|EDU80755.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|189372363|gb|EDU90779.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC869]
 gi|189378628|gb|EDU97044.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC508]
 gi|208727684|gb|EDZ77285.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735382|gb|EDZ84069.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740115|gb|EDZ87797.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4042]
 gi|209159435|gb|ACI36868.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4115]
 gi|209763778|gb|ACI80201.1| aminoglycoside efflux pump [Escherichia coli]
 gi|209763780|gb|ACI80202.1| aminoglycoside efflux pump [Escherichia coli]
 gi|209763782|gb|ACI80203.1| aminoglycoside efflux pump [Escherichia coli]
 gi|209763786|gb|ACI80205.1| aminoglycoside efflux pump [Escherichia coli]
 gi|254593814|gb|ACT73175.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7
           str. TW14359]
 gi|320188801|gb|EFW63460.1| putative aminoglycoside efflux pump [Escherichia coli O157:H7 str.
           EC1212]
 gi|320640973|gb|EFX10457.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7
           str. G5101]
 gi|320646255|gb|EFX15182.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H-
           str. 493-89]
 gi|320651761|gb|EFX20141.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H-
           str. H 2687]
 gi|320667792|gb|EFX34703.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7
           str. LSU-61]
 gi|326340264|gb|EGD64068.1| putative aminoglycoside efflux pump [Escherichia coli O157:H7 str.
           1125]
          Length = 1037

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                              
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATAEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATAEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|240122867|ref|ZP_04735823.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID332]
 gi|268681490|ref|ZP_06148352.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID332]
 gi|268621774|gb|EEZ54174.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID332]
          Length = 311

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 167/303 (55%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTRGLNFSVEFTGGTVMEVQYQQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L++GD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKMRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +    I ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVNNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +       +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALRGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298

Query: 830 NAR 832
            A+
Sbjct: 299 IAK 301


>gi|16763855|ref|NP_459470.1| acridine efflux pump [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|161615329|ref|YP_001589294.1| hypothetical protein SPAB_03099 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167990460|ref|ZP_02571560.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168231464|ref|ZP_02656522.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237590|ref|ZP_02662648.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168240305|ref|ZP_02665237.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168465570|ref|ZP_02699452.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168818910|ref|ZP_02830910.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446686|ref|YP_002039718.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449416|ref|YP_002044509.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194470936|ref|ZP_03076920.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194736378|ref|YP_002113506.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197249604|ref|YP_002145456.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197264579|ref|ZP_03164653.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|198246140|ref|YP_002214428.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|200390115|ref|ZP_03216726.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|207855954|ref|YP_002242605.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|238911395|ref|ZP_04655232.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16418982|gb|AAL19429.1| RND family, acridine efflux pump [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161364693|gb|ABX68461.1| hypothetical protein SPAB_03099 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405349|gb|ACF65571.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407720|gb|ACF67939.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194457300|gb|EDX46139.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194711880|gb|ACF91101.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195631676|gb|EDX50196.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197213307|gb|ACH50704.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197242834|gb|EDY25454.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289507|gb|EDY28870.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|197940656|gb|ACH77989.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199602560|gb|EDZ01106.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205330914|gb|EDZ17678.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334152|gb|EDZ20916.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205340025|gb|EDZ26789.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205343984|gb|EDZ30748.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206707757|emb|CAR32042.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261245757|emb|CBG23554.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267992191|gb|ACY87076.1| acridine efflux pump [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 14028S]
 gi|301157085|emb|CBW16569.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|320084749|emb|CBY94539.1| Toluene efflux pump membrane transporter ttgB [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321226052|gb|EFX51103.1| RND efflux system, inner membrane transporter CmeB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|322614751|gb|EFY11680.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322618858|gb|EFY15746.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322623565|gb|EFY20404.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629136|gb|EFY25915.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631857|gb|EFY28611.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322637406|gb|EFY34108.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642091|gb|EFY38701.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322652347|gb|EFY48702.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322653250|gb|EFY49583.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322660601|gb|EFY56837.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664753|gb|EFY60946.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669194|gb|EFY65344.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322670739|gb|EFY66872.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322679022|gb|EFY75077.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682051|gb|EFY78076.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685120|gb|EFY81117.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323128794|gb|ADX16224.1| acridine efflux pump [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323192986|gb|EFZ78209.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323196932|gb|EFZ82074.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323203917|gb|EFZ88934.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206998|gb|EFZ91951.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323214201|gb|EFZ98959.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323214475|gb|EFZ99226.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323219183|gb|EGA03680.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323226981|gb|EGA11162.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323230201|gb|EGA14321.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233939|gb|EGA18028.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323238367|gb|EGA22425.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323244054|gb|EGA28063.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246640|gb|EGA30614.1| multidrug efflux system protein AcrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323251841|gb|EGA35704.1| multidrug efflux system protein AcrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323257837|gb|EGA41516.1| multidrug efflux system protein AcrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323261149|gb|EGA44741.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323264921|gb|EGA48420.1| multidrug efflux system protein AcrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323272484|gb|EGA55891.1| multidrug efflux system protein AcrB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326622175|gb|EGE28520.1| acridine efflux pump [Salmonella enterica subsp. enterica serovar
           Dublin str. 3246]
 gi|332987424|gb|AEF06407.1| acridine efflux pump [Salmonella enterica subsp. enterica serovar
           Typhimurium str. UK-1]
          Length = 1049

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L +   T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        I           
Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +     P    +           S   
Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + +   I+    +   +         + +G     V   
Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++           ++    +  
Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|167991784|ref|ZP_02572883.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205329869|gb|EDZ16633.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|267994591|gb|ACY89476.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|332989409|gb|AEF08392.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 1037

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++      +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFPHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIRRRFPLKPR 1035


>gi|224582312|ref|YP_002636110.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224466839|gb|ACN44669.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 1049

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L +   T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        I           
Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +     P    +           S   
Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + +   I+    +   +         + +G     V   
Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGIFLTMVQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++           ++    +  
Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|312911507|dbj|BAJ35481.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
          Length = 1049

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L +   T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        I           
Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +     P    +           S   
Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRL 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + +   I+    +   +         + +G     V   
Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++           ++    +  
Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|258404974|ref|YP_003197716.1| protein-export membrane protein SecF [Desulfohalobium retbaense DSM
           5692]
 gi|257797201|gb|ACV68138.1| protein-export membrane protein SecF [Desulfohalobium retbaense DSM
           5692]
          Length = 359

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 96/338 (28%), Positives = 160/338 (47%), Gaps = 48/338 (14%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVD 590
            LI    A+ F+  R   + +S L  +  +  L   G   YGIDF GGI +       V 
Sbjct: 4   QLIKPGTAVNFIGRRKIALVVSALVLLLGLGSLLLKGGPKYGIDFAGGITVQTQFAADVS 63

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +++ L + ++  ++ Q F  E       +    D  +      + +    E+     
Sbjct: 64  LKDIKAALATAELPSLNVQKFGTEGGNEYLFRVAAVDISSSEVRQAVQEALSAEMDTGFE 123

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--------------------- 689
           I+  E+VGPK+  +L  K +  +  + + + IYI  RF+                     
Sbjct: 124 IRRLEMVGPKVGADLRAKALEALFYAILIISIYISGRFEHRWLASALMAGGLAGGLYVLQ 183

Query: 690 -------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                                      FALGA+  LI D+  T+G F+L   EF+L+ VA
Sbjct: 184 IAGFPLSALVVAALVIAVGMCWYLKLNFALGAVIALIHDVLVTVGVFSLLNKEFDLSIVA 243

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMK-LYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A+LT+IGYS+ND ++V+DR+R+N++       S ++ I+ SIN+TL R++ TS    + V
Sbjct: 244 ALLTIIGYSLNDTIIVFDRIRENLRGKAAKHRSLKETINISINQTLSRTILTSGTTLLVV 303

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + + ++GG VI +FA  +  G++V   SSIF+A+P+LL
Sbjct: 304 ISLFLFGGGVIHNFAFALLVGVIVGTYSSIFVASPLLL 341


>gi|261379740|ref|ZP_05984313.1| protein-export membrane protein SecF [Neisseria subflava NJ9703]
 gi|284797416|gb|EFC52763.1| protein-export membrane protein SecF [Neisseria subflava NJ9703]
          Length = 311

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 165/299 (55%), Gaps = 3/299 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   + VD
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLITKGLNFSVEFTGGTVMEVQYQQGVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++  R  L++L++GD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKTRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDNPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +      ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +  +    +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPHMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R 
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRE 297


>gi|170683475|ref|YP_001744652.1| aminoglycoside/multidrug efflux system [Escherichia coli SMS-3-5]
 gi|170521193|gb|ACB19371.1| acriflavine resistance protein D [Escherichia coli SMS-3-5]
          Length = 1037

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      I       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATIEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGMPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATIEMGAEKYDYLSRFNGMPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|24372776|ref|NP_716818.1| preprotein translocase subunit SecD [Shewanella oneidensis MR-1]
 gi|24346857|gb|AAN54263.1|AE015563_3 protein-export membrane protein SecD [Shewanella oneidensis MR-1]
          Length = 618

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 163/526 (30%), Positives = 275/526 (52%), Gaps = 23/526 (4%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  ++  P  L  +++   PS +       I LGLDLRGG   +L+VD          
Sbjct: 99  TLVSSMVIEPKELTLALVSAAPSWLQNLGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQAD 158

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
              + LR FL+++ I   S+R    +  ++   +    + A       +    +      
Sbjct: 159 ALVESLRQFLREQQIRGASVRIDNTRDDVALQIAIALSDAAQ-ADNSARAAVRQFIQQSY 217

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
               +T  +  + I LSQ+   ++ +  ++Q+++I+R RI+++GI+E+ +QR G HRI I
Sbjct: 218 PTWQLTNADNGLVIKLSQDEQSKLRNLTVQQNLQIMRSRIEELGITEALVQRQGEHRIRI 277

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPG QDP+  + ++G TA ++F +V             + L+D  GN   V     + G
Sbjct: 278 ELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAQVLKDKSGNPVYVARSPVLGG 332

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP----- 306
            H+  A AN         V+I  D +G ++  E +R NIGKP+A                
Sbjct: 333 DHIVDARANIGEMGM-AEVNIHLDRIGGQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQ 391

Query: 307 -------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    + +I+G  T + A  LA +LRAGS+   + IVEER +G  LG++
Sbjct: 392 TQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGAE 451

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIA 418
           +I  G  A+  G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A LTLP IA
Sbjct: 452 NIENGFAALGLGMGITLLFMALWYRRLGWVANVALISNMVILFGLLALIPGAVLTLPGIA 511

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STIFD+N T +I  VVL+
Sbjct: 512 GLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVLY 571

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
             G G ++GFA+T+GL +L SMFT I   RA++  +      + + 
Sbjct: 572 SIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVR 617



 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 92/260 (35%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    + +          +    ++ L       G    Q
Sbjct: 359 GQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 418

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I  G   + +     L+++ + ++  
Sbjct: 419 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 477

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 478 LGWVANVALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 537

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID   +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 538 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 594

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  ++  +Y   A+ 
Sbjct: 595 TGIFASRALINLVYGRDARR 614


>gi|145640163|ref|ZP_01795747.1| preprotein translocase subunit SecD [Haemophilus influenzae R3021]
 gi|145274749|gb|EDK14611.1| preprotein translocase subunit SecD [Haemophilus influenzae
           22.4-21]
          Length = 616

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + S    N +  GLDLRGG   ++EVD +  +    +   D LR  L+KE I   +++
Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169

Query: 93  QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
             +     ++ A+   +      +                   +       I++ LS   
Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA 
Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278

Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  N +                 D  G+   +  +  + G H+  +++  D  + 
Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
            P V ++ D  G     + T+    KP+A +                             
Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q       QI+G  +I  A  L+ +L++G+L   + IVEER +G  LG+ ++ +G  A 
Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GLV ++ FM+  Y  +G++A F++ +N++L + L+S+L  ATL++P IAGIVL +G++
Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ERI+EE R  +S+  +++ G++ A+++IFD+N+T ++  ++L+  G G ++G
Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 578

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           FAIT+ L + ISMFTAI+  RA++  +   K++K +
Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614



 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +GI   +   +A++ ++   +K  F + A   L+++I   +G  ++  
Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G SV+  V++++R+++ ++      S +  I++  N        
Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   I  FAI ++ G+ ++  ++I     ++  +Y  +    
Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613



 Score = 40.8 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 36/118 (30%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   I  IG+L +LPN   +    +                  G+       
Sbjct: 4   RYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQI----------------SGTR------ 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             +     L    D L++      +   S+      I   F ++  +    DK+T  L
Sbjct: 42  GQEANTSVLGQVQDVLKT----NNLPTKSIVLENGSILARFTNTDDQLLAKDKITERL 95


>gi|68248848|ref|YP_247960.1| preprotein translocase subunit SecD [Haemophilus influenzae
           86-028NP]
 gi|145631086|ref|ZP_01786861.1| preprotein translocase subunit SecD [Haemophilus influenzae R3021]
 gi|145632484|ref|ZP_01788218.1| preprotein translocase subunit SecD [Haemophilus influenzae 3655]
 gi|145635146|ref|ZP_01790851.1| preprotein translocase subunit SecD [Haemophilus influenzae PittAA]
 gi|229844943|ref|ZP_04465080.1| preprotein translocase subunit SecD [Haemophilus influenzae 6P18H1]
 gi|229846328|ref|ZP_04466436.1| preprotein translocase subunit SecD [Haemophilus influenzae 7P49H1]
 gi|68057047|gb|AAX87300.1| protein-export membrane protein SecD [Haemophilus influenzae
           86-028NP]
 gi|144983371|gb|EDJ90853.1| preprotein translocase subunit SecD [Haemophilus influenzae R3021]
 gi|144986679|gb|EDJ93231.1| preprotein translocase subunit SecD [Haemophilus influenzae 3655]
 gi|145267567|gb|EDK07566.1| preprotein translocase subunit SecD [Haemophilus influenzae PittAA]
 gi|229810421|gb|EEP46139.1| preprotein translocase subunit SecD [Haemophilus influenzae 7P49H1]
 gi|229812077|gb|EEP47769.1| preprotein translocase subunit SecD [Haemophilus influenzae 6P18H1]
 gi|309972615|gb|ADO95816.1| General secretory pathway component SecD [Haemophilus influenzae
           R2846]
          Length = 616

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + S    N +  GLDLRGG   ++EVD +  +    +   D LR  L+KE I   +++
Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169

Query: 93  QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
             +     ++ A+   +      +                   +       I++ LS   
Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA 
Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278

Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  N +                 D  G+   +  +  + G H+  +++  D  + 
Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
            P V ++ D  G     + T+    KP+A +                             
Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q       QI+G  +I  A  L+ +L++G+L   + IVEER +G  LG+ ++ +G  A 
Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GLV ++ FM+  Y  +G++A F++ +N++L + L+S+L  ATL++P IAGIVL +G++
Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ERI+EE R  +S+  +++ G++ A+++IFD+N+T ++  ++L+  G G ++G
Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 578

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           FAIT+ L + ISMFTAI+  RA++  +   K++K +
Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614



 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +GI   +   +A++ ++   +K  F + A   L+++I   +G  ++  
Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G SV+  V++++R+++ ++      S +  I++  N        
Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   I  FAI ++ G+ ++  ++I     ++  +Y  +    
Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613


>gi|293611111|ref|ZP_06693410.1| predicted protein [Acinetobacter sp. SH024]
 gi|292826763|gb|EFF85129.1| predicted protein [Acinetobacter sp. SH024]
          Length = 321

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 4/310 (1%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M  +      ++    D   I FM+        SIL ++ SI  + T GLN G+DF GG
Sbjct: 1   MMTKVTQQDSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +   +   +P + S V   L+     D   Q     K+ LVR+  Q         +   +
Sbjct: 61  VSAELNYAQPANQSEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQEVKVE---DLSNAI 117

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K +      + +   + VG ++  EL  +    V ++ I MLIY+ IRF++  A+GA+ 
Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  DI   +G FALF   F+LT +AAVL +IG+S+ND +VV DR+R+N +      + R
Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +++D ++ ETL R+++TSM   + VL M   GG  +  F++ M  G+ V   SSI+I   
Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 297 FALWRGLNRQ 306


>gi|110642642|ref|YP_670372.1| aminoglycoside/multidrug efflux system [Escherichia coli 536]
 gi|110344234|gb|ABG70471.1| probable aminoglycoside efflux pump [Escherichia coli 536]
          Length = 1037

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIIAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSV 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIIAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|16759455|ref|NP_455072.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29142773|ref|NP_806115.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213162899|ref|ZP_03348609.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|25318730|pir||AF0561 acriflavin resistance protein B [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501747|emb|CAD04960.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138405|gb|AAO69975.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 1049

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 68/686 (9%), Positives = 176/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L +   T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        I           
Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +     P    +           S   
Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + +   I+    +   +         + +G     V   
Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++           ++    +  
Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 + + +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LVEAMLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|254521358|ref|ZP_05133413.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14]
 gi|219718949|gb|EED37474.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14]
          Length = 1040

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 78/702 (11%), Positives = 185/702 (26%), Gaps = 42/702 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  +  +P+  P                      
Sbjct: 8   RPIFAWVIAIIIMLAGGLALF-----KLPVSMYPNVAPPAVE---------ISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L        +        ITL+F      +    +V   LQ 
Sbjct: 54  AKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         + +     +     A + +  +    +D++       
Sbjct: 114 AMPLLPQEVQRQGINVAKSSSGFLNVIAFVSENGSMDANDIADYVGSNVVDRLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     + A+++      N        G            
Sbjct: 174 NIQVFG-GKYAMRIWLDPNKLHTYGLSVAEVTAAVKAQNAQVAIGQLGGAPSVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +           
Sbjct: 233 TINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESYDFVT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +    +     +   T          +++         +          S   
Sbjct: 280 RYNGQPASGLAVTLATGANALDTAAGVDAALQDMKSFFPAGLKAEIPYDTTPFVRVSIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L++LG ++ + ++  +V
Sbjct: 340 VVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAMLGFSVNMLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+ T+  ++ +S+  AI +  A+   +++        +            
Sbjct: 460 SGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLK-------PLKKGEHHVAHKGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F          S  +      ++       GI     + +GVL  R     +   +
Sbjct: 513 SGRFFNGFNHGFDRTSESYQRGVRGIIHRPWRFMGIVAALFVLMGVLFVRLPSSFLPNED 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTIQNTE 655
              L     +      E+        +      +   +E V      +            
Sbjct: 573 QGVLMALVQAPVGATQERTLESITALENHFLQNEKDAVESVFSVQGFSFAGMGQNAGMAF 632

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           +     S      G++ +   A+A L  I   F + F   AI
Sbjct: 633 VKLKDWSERDADNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  D   +      + L        +++     ++   + +    P     
Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVDAALQDMKSFFPAGLKA 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     R  I+  +  +I + + + + +++  + +   L     + + +  T G  
Sbjct: 324 EIPYDTTPFVRVSIKGVVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+  + A++  IG  V+D +VV + +     +    +S  +   KS+ +  G 
Sbjct: 384 AMLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V   +      +PMA   GS       F+  +   + ++   +I +   +   +     
Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501

Query: 829 K 829
           K
Sbjct: 502 K 502



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 78/247 (31%), Gaps = 13/247 (5%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   +      +       V  S   +         +   N                
Sbjct: 779  QPFRMVPEDFDLWSVKNDKGEMVPFSAFATKHWDYGSPRLERYNGVSAMEIQGEPAPGVA 838

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   + ++ K+         T  + +         L+        +S + + + +  
Sbjct: 839  SGDAMAEIEQLAKQLPAGFGIEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAA 892

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             ++ W      +    L I   +      G+E ++    A+LT +G +  + +++ +  +
Sbjct: 893  MYESWSVPTAVLLAAPLGILGAVLANTFKGLERDIYFQVAMLTTVGLTSKNAILIVEFAK 952

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            +N+       S  + I  ++ + L   V TS+A  + V+P+A+    G     +    + 
Sbjct: 953  ENL---EKGASLIESIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVL 1009

Query: 803  FGIVVAA 809
             G++V  
Sbjct: 1010 GGMIVGT 1016


>gi|59800645|ref|YP_207357.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae FA 1090]
 gi|194097899|ref|YP_002000944.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae
           NCCP11945]
 gi|239998372|ref|ZP_04718296.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae 35/02]
 gi|240013498|ref|ZP_04720411.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae DGI18]
 gi|240080077|ref|ZP_04724620.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae FA19]
 gi|240115031|ref|ZP_04729093.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID18]
 gi|240120570|ref|ZP_04733532.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID24-1]
 gi|254493096|ref|ZP_05106267.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae 1291]
 gi|260441153|ref|ZP_05794969.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae DGI2]
 gi|268594233|ref|ZP_06128400.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae 35/02]
 gi|268596231|ref|ZP_06130398.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae FA19]
 gi|268600710|ref|ZP_06134877.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID18]
 gi|291044481|ref|ZP_06570190.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae DGI2]
 gi|293397617|ref|ZP_06641823.1| preprotein translocase SecF subunit [Neisseria gonorrhoeae F62]
 gi|59717540|gb|AAW88945.1| putative protein-export membrane protein [Neisseria gonorrhoeae FA
           1090]
 gi|193933189|gb|ACF29013.1| protein export protein SecF [Neisseria gonorrhoeae NCCP11945]
 gi|226512136|gb|EEH61481.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae 1291]
 gi|268547622|gb|EEZ43040.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae 35/02]
 gi|268550019|gb|EEZ45038.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae FA19]
 gi|268584841|gb|EEZ49517.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID18]
 gi|291011375|gb|EFE03371.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae DGI2]
 gi|291611563|gb|EFF40632.1| preprotein translocase SecF subunit [Neisseria gonorrhoeae F62]
 gi|317163661|gb|ADV07202.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 311

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 95/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L   GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVARGLNFSVEFTGGTVMEVQYQQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L++GD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKMRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +    I ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVNNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +       +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298

Query: 830 NAR 832
            A+
Sbjct: 299 IAK 301


>gi|168243253|ref|ZP_02668185.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194449255|ref|YP_002046544.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194407559|gb|ACF67778.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205337673|gb|EDZ24437.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 1037

 Score =  202 bits (514), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIRRRFPLKPR 1035


>gi|299768779|ref|YP_003730805.1| preprotein translocase subunit SecF [Acinetobacter sp. DR1]
 gi|298698867|gb|ADI89432.1| preprotein translocase subunit SecF [Acinetobacter sp. DR1]
          Length = 321

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 98/310 (31%), Positives = 155/310 (50%), Gaps = 4/310 (1%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M  +      ++    D   I FM+        SIL ++ SI  + T GLN G+DF GG
Sbjct: 1   MMTKVTQQDSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIVTKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +   +   +P + S V   L+     D   Q     K+ LVR+  Q         +   +
Sbjct: 61  VSAELNYAQPANQSDVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQEVKVE---DLNNAI 117

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K +      + +   + VG ++  EL  +    V ++ I MLIY+ IRF++  A+GA+ 
Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  DI   +G FALF   F+LT +AAVL +IG+S+ND +VV DR+R+N +      + R
Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +++D ++ ETL R+++TSM   + VL M   GG  +  FA+ M  G+ V   SSI+I   
Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFAVAMFVGVFVGTYSSIYIGTA 296

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 297 FALWRGLNRQ 306


>gi|253700408|ref|YP_003021597.1| preprotein translocase subunit SecF [Geobacter sp. M21]
 gi|251775258|gb|ACT17839.1| protein-export membrane protein SecF [Geobacter sp. M21]
          Length = 301

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 87/296 (29%), Positives = 144/296 (48%), Gaps = 9/296 (3%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSI---CLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               I FM  R     IS + ++  I     +     N GIDF GGI + V   +PV   
Sbjct: 5   RNTNIDFMSLRKISFIISGIVAVVGILGVIAIGRGTANMGIDFSGGIAMQVKFAQPVTTQ 64

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            VR  L    I ++  Q   G    LV++      +      L              T++
Sbjct: 65  GVRDALGKGGINEVELQEITGGNQILVKMHKSEKSAQNVEDALTQQMA-----GNAFTVE 119

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           ++  +GP I  +L +  +V V +S + +++YI  RF + F +GA+   + D+   +  F 
Sbjct: 120 SSTEIGPSIGEKLKKDTLVAVALSMLGIILYIAWRFDFKFGVGAVVATMHDVLAMIAVFY 179

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           +   E N+  + AVLT+ GYS+ D VVV+DR+R+NM           + ++SINETL R+
Sbjct: 180 VLHKEVNILLITAVLTIAGYSLTDTVVVFDRIRENMHKSLK-DPLFVIFNRSINETLSRT 238

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + TS+  F++ + + ++GG VI  FA  +  G++VA  SS+F+A+PI+        
Sbjct: 239 IITSVTTFLAAISLYLFGGEVIHDFAFALVVGVLVATYSSVFVASPIVALWEKSSE 294


>gi|323965148|gb|EGB60607.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli M863]
 gi|327254789|gb|EGE66405.1| inner membrane protein [Escherichia coli STEC_7v]
          Length = 1049

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKYQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|333001602|gb|EGK21170.1| inner membrane protein [Shigella flexneri VA-6]
          Length = 1037

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNAAINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKAEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++      +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFIHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|260582875|ref|ZP_05850660.1| protein-export membrane protein SecD [Haemophilus influenzae NT127]
 gi|260094088|gb|EEW77991.1| protein-export membrane protein SecD [Haemophilus influenzae NT127]
          Length = 616

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + S    N +  GLDLRGG   ++EVD +  +    +   D LR  L+KE I   +++
Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169

Query: 93  QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
             +     ++ A+   +      +                   +       I++ LS   
Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA 
Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278

Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  N +                 D  G+   +  +  + G H+  +++  D  + 
Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEIKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
            P V ++ D  G     + T+    KP+A +                             
Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q       QI+G  +I  A  L+ +L++G+L   + IVEER +G  LG+ ++ +G  A 
Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GLV ++ FM+  Y  +G++A F++ +N++L + L+S+L  ATL++P IAGIVL +G++
Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ERI+EE R  +S+  +++ G++ A+++IFD+N+T ++  ++L+  G G ++G
Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 578

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           FAIT+ L + ISMFTAI+  RA++  +   K++K +
Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +GI   +   +A++ ++   +K  F + A   L+++I   +G  ++  
Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G SV+  V++++R+++ ++      S +  I++  N        
Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   I  FAI ++ G+ ++  ++I     ++  +Y  +    
Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613



 Score = 40.4 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   I  IG+L +LPN   +    +                  G+       
Sbjct: 4   RYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQI----------------SGTR------ 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             +     L    D L++      +   S+      I   F ++  +    DK+   L
Sbjct: 42  GQEANTSVLGQVQDVLKT----NNLPTKSIVLENGSILARFTNTDDQLLAKDKIAERL 95


>gi|331664024|ref|ZP_08364934.1| putative aminoglycoside efflux pump [Escherichia coli TA143]
 gi|331059823|gb|EGI31800.1| putative aminoglycoside efflux pump [Escherichia coli TA143]
          Length = 1037

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 178/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   ++     + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVMVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|145628558|ref|ZP_01784358.1| preprotein translocase subunit SecD [Haemophilus influenzae
           22.1-21]
 gi|145639848|ref|ZP_01795449.1| preprotein translocase subunit SecD [Haemophilus influenzae PittII]
 gi|144979028|gb|EDJ88714.1| preprotein translocase subunit SecD [Haemophilus influenzae
           22.1-21]
 gi|145271066|gb|EDK10982.1| preprotein translocase subunit SecD [Haemophilus influenzae PittII]
 gi|309750343|gb|ADO80327.1| General secretory pathway component SecD [Haemophilus influenzae
           R2866]
          Length = 616

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + S    N +  GLDLRGG   ++EVD +  +    +   D LR  L+KE I   +++
Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169

Query: 93  QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
             +     ++ A+   +      +                   +       I++ LS   
Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA 
Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278

Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  N +                 D  G+   +  +  + G H+  +++  D  + 
Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRTVLGGEHIINSSSGLDQHSS 338

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
            P V ++ D  G     + T+    KP+A +                             
Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q       QI+G  +I  A  L+ +L++G+L   + IVEER +G  LG+ ++ +G  A 
Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GLV ++ FM+  Y  +G++A F++ +N++L + L+S+L  ATL++P IAGIVL +G++
Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ERI+EE R  +S+  +++ G++ A+++IFD+N+T ++  ++L+  G G ++G
Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 578

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           FAIT+ L + ISMFTAI+  RA++  +   K++K +
Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614



 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +GI   +   +A++ ++   +K  F + A   L+++I   +G  ++  
Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G SV+  V++++R+++ ++      S +  I++  N        
Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   I  FAI ++ G+ ++  ++I     ++  +Y  +    
Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613


>gi|91792761|ref|YP_562412.1| preprotein translocase subunit SecD [Shewanella denitrificans
           OS217]
 gi|91714763|gb|ABE54689.1| protein-export membrane protein SecD [Shewanella denitrificans
           OS217]
          Length = 616

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 156/516 (30%), Positives = 273/516 (52%), Gaps = 32/516 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             +  A+  + + LGLDLRGG H ++EVD  + V    +    + RS L++E I    +R
Sbjct: 110 PEWLEALGGSPMKLGLDLRGGVHFLMEVDMSEAVRKMEEAKIADFRSQLREEKIRYAGVR 169

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
           +    I + F D+         +             D             +   +S+  +
Sbjct: 170 KTPKGIEIKFRDADTVAKAEAYLKTRGN--------DMTFADASEGDNFVLRANMSEVYV 221

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
            Q+   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++LG TA +
Sbjct: 222 KQIKEEALQQNIITIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEILGATASI 281

Query: 213 SFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
            FH +                G +     +G   +++ ++ ++G H+ GA  +FD  + +
Sbjct: 282 EFHMLDDKADPSAAASGRVPAGSQVYPRREGGIAVLKKEIMLTGNHITGAQPSFDEYS-R 340

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA-----------------PVINQ 310
           P V I+ D  G   F  VT+DNIGKP+A +      +                   V   
Sbjct: 341 PQVSINLDAQGGNIFSNVTKDNIGKPMATLFIEYKDSGLRNPNGTVKMTKIEEVISVATI 400

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
               G+  +        +  LA +LRAG+L   + IVEER +G  LG+++I  G  A++ 
Sbjct: 401 QARLGRNFVINGLEHAESQNLALLLRAGALIAPVTIVEERTIGPSLGAENIQNGMQAMIW 460

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVD 429
           GL ++++FM++ Y  +G++A+ ++  N+I+ + ++S++  A LTLP IAG+VL +G+AVD
Sbjct: 461 GLAIVLIFMMIYYRAFGIIANIALLANIIMVVGVMSMIPGAVLTLPGIAGMVLTVGMAVD 520

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
            N+L+ ERIREE    +SV  ++  G++ A STI D+NIT  +  +++F  G GAV+GFA
Sbjct: 521 GNVLIYERIREEILAGRSVQQAIHEGYANALSTIADANITTFMTALIMFAVGTGAVKGFA 580

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +T+ + I  SMFTAI   R+++  +   K++K + I
Sbjct: 581 VTLMIGIATSMFTAIVGTRSIVNAVWGGKRVKKLSI 616



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 96/242 (39%), Gaps = 6/242 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S +R+   ++++  I            +   +              +  +   ++   T
Sbjct: 376 DSGLRNPNGTVKMTKIEEVISVATIQARLGRNFVINGLEHAESQNLALLLRAGALIAPVT 435

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I     +GP +  E I+ G+  +I     +LI++ I ++  F + A   L+ +I   +G 
Sbjct: 436 IVEERTIGPSLGAENIQNGMQAMIWGLAIVLIFMMIYYR-AFGIIANIALLANIIMVVGV 494

Query: 711 FALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++  G    L  +A ++  +G +V+  V++Y+R+R+ +       S +  I +     L
Sbjct: 495 MSMIPGAVLTLPGIAGMVLTVGMAVDGNVLIYERIREEILA---GRSVQQAIHEGYANAL 551

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRA 828
                 ++  F++ L M   G   +  FA+ +  GI  +  ++I     I+       R 
Sbjct: 552 STIADANITTFMTALIMFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAVWGGKRV 611

Query: 829 KN 830
           K 
Sbjct: 612 KK 613


>gi|327482634|gb|AEA85944.1| multidrug/solvent RND transporter TtgB [Pseudomonas stutzeri DSM
           4166]
          Length = 1045

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 70/685 (10%), Positives = 184/685 (26%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  ++++PS               G  +      
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----KLPVNQYPSIAAPAV---------GISVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT++F      +    +V   LQ 
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDGLRYISSESNSDGSMTITVTFDQGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      +++             + +  I+    D I  ++   
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVRNFLIVIGLVSTDGSLDQRDLANYIVANMQDPISRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNNFSLTPVDVSSAIQAQNVQVSSGQLGGLPALPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +                 +    +        +        +           
Sbjct: 233 TVIGKTRL-------------QTPEQFRNILLKVNSDGSQVRLGDVAKVELGGETYAVSA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T+E        L+    P    +           S + 
Sbjct: 280 HFNGKPAAGLALKLATGANALDTVEGVRKTIDELKPFFPPGVEVVYPYDTTPVISASITG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  LV   ++ + ++ T  +L++ G ++   ++  ++
Sbjct: 340 VMHTLLEAFVLVFLVMYLFLQNFRATLVPTLAVPVVLLGTFGVLAVFGFSINTLTMFAMI 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMREEGLSPLEATRKSMGQIQGALIGIGVVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++++S+  A+    A+   +           +       +   
Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVLMALIFTPALCATLLKPIDKDDHHEKRGFFGWFNRTF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R   + +   ++ ++  +            + +G +   V+   
Sbjct: 520 ERSVNGYERGVKAVLKRKAPFLLLYVLIVAVMVVLFNRIPTAFLPEEDQGVLFAQVMTPS 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  + ++++++   +  +       F V      G   +       +K        
Sbjct: 580 GSTAERTQQSIDAMRSYLLEEEGDIVRSVFTVTGFSFAGRGQSSGIAFIGLKPWSERTNK 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
             ++        +         +  
Sbjct: 640 DDSVFALAQRAQQHFASFRDAQVFA 664



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   +S          L        +++     +     ++    
Sbjct: 258 SQVRLGDVAKVELGGETYAVSAHFNGKPAAGLALKLATGANALDTVEGVRKTIDELKPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I   +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PPGVEVVYPYDTTPVISASITGVMHTLLEAFVLVFLVMYLFLQNFRATLVPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A+FG   N   + A++  IG  V+D +VV + +     +    +S  +   KS+
Sbjct: 378 GTFGVLAVFGFSINTLTMFAMILAIGLLVDDAIVVVENV--ERVMREEGLSPLEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +   +     +LPMA +GGS       F+I +   +V++   ++     +   
Sbjct: 436 GQIQGALIGIGVVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMVLSVLMALIFTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 84/239 (35%), Gaps = 8/239 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         +   G+ ++ +    +   V      G+        + + +       L 
Sbjct: 791  NADGEMVPFSAFATGEWTYGSPKLSRYNGVSAIEMLGEPAPGYSSGDAMAEVERIAAQLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L     + +  +S + + + +   ++ W      +  + L I   
Sbjct: 851  PGVGYSWTGQSYEERLAGSQTLALYALSLLVVFLCLAALYESWSIPFSVMLVVPLGIVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L F  L G+   +     ++T IG S  + +++ +  +    L+   +S+ D   ++   
Sbjct: 911  LAFTLLRGLSNEVFFQVGLVTTIGLSARNAILIVEFAK---ALHEQGMSYADAALQACRM 967

Query: 768  TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             L   + TS+A  + V+P+A+    G     +    +  G++ AA  +IF      + I
Sbjct: 968  RLRPIIMTSLAFILGVVPLAIASGAGAGSKHAIGTGVIGGMLTAAVLAIFWIPLFYVMI 1026


>gi|28871441|ref|NP_794060.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28854692|gb|AAO57755.1| isothiocyanate resistance protein SaxB; isochorismatase family
           [Pseudomonas syringae pv. tomato str. DC3000]
 gi|331018027|gb|EGH98083.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 1044

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/687 (9%), Positives = 182/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------AIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVRDAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S   
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLLGTFGILAGFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    K+        F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      I+     + +       +  +   G+    +   
Sbjct: 520 FDRSVVSYERGVGNMLKHKWLSYLGYIVIVAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  ++
Sbjct: 640 ENSVFKLAERAQGYFFSLRDAMVFAIV 666



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I+  +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESIKGVVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAGFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V  S   S   +     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSAGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEILGTPAPGYSSGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLTDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + I        +
Sbjct: 1009 ITAVVLAIFWVPLFFVSISGLFKSKQK 1035


>gi|323976054|gb|EGB71147.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli TW10509]
          Length = 1049

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKYQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|40063326|gb|AAR38144.1| protein-export membrane protein SecD [uncultured marine bacterium
           578]
          Length = 615

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 175/519 (33%), Positives = 291/519 (56%), Gaps = 36/519 (6%)

Query: 32  LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
           + ++ S +    +SLGLDLRGG H +LEVD +  ++  +  Y +ELR+ L+K+ +    +
Sbjct: 108 IPQWLSGLGGKAMSLGLDLRGGVHFLLEVDMEAVISTSINRYYNELRTLLRKDKL-YKKI 166

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           R+  N +  SF     K +    +   L  +           +  + +E E+S+ +S N 
Sbjct: 167 RKEDNMLVASFKTEEQKNDAKKLIKKNLADLI---------IVEGSESELEVSLEMSSNA 217

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
                S A+ Q++  +R R++++G++E  IQ+ G  RI++QLPG QD +R +++LG  A 
Sbjct: 218 QKAAKSSALNQNITTLRNRVNELGVAEPIIQQQGFERIVVQLPGVQDTARAKEILGAVAT 277

Query: 212 MSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           + F  V   N  +          G +  +  DG   L++  V  +G ++    ++   K 
Sbjct: 278 VEFRLVDEKNDVQTAIQSGKIPSGSKLYKFKDGRPLLLKTTVIATGENIVD-ASSGVDKD 336

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT-------------------AP 306
           + P+V I+ D  G R   E T++ +G  ++VV     +                      
Sbjct: 337 NNPMVSITLDNAGGRTMLETTKEFVGYRMSVVFIENQVETIIENGKTVKKRSKTQDIINA 396

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q   S + QI+G  +   A  LA +LRAGSL   + I+EER +G  LG+D+I KG  
Sbjct: 397 ATIQGTFSNRFQITGLESSREARNLALLLRAGSLSAPIEIIEERTIGPSLGADNIQKGLI 456

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G  L+++FM + Y  +GLVA+ ++ LN+I  +++LS++ ATLTLP IAGIVL +G+
Sbjct: 457 SVLVGFALVLVFMALRYRIFGLVANVALTLNLITIVSILSMIQATLTLPGIAGIVLTVGM 516

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+N+L+ ERI+EE R  +++  ++  G+ +A  TI D+NIT LIA++VLF FG GA++
Sbjct: 517 AVDANVLIFERIKEELRSTKNIQKAISAGYEKALLTIADANITTLIASLVLFSFGTGAIK 576

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GFA+T+ + I+ SMFTAI + RAM+  I   KK++ I I
Sbjct: 577 GFAVTLSIGIITSMFTAIIVSRAMINIIYGGKKIEEISI 615



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 105/254 (41%), Gaps = 4/254 (1%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F G     V     V+  +        +       N    +          G   ++   
Sbjct: 360 FVGYRMSVVFIENQVETIIENGKTVKKRSKTQDIINAATIQGTFSNRFQITGLESSREAR 419

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
              +  +   +     I     +GP +  + I+KG++ V++    +L+++ +R++  F L
Sbjct: 420 NLALLLRAGSLSAPIEIIEERTIGPSLGADNIQKGLISVLVGFALVLVFMALRYRI-FGL 478

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A   L L++   +   ++      L  +A ++  +G +V+  V++++R+++ ++   ++
Sbjct: 479 VANVALTLNLITIVSILSMIQATLTLPGIAGIVLTVGMAVDANVLIFERIKEELR---ST 535

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + +  I     + L      ++   I+ L +  +G   I  FA+ ++ GI+ +  ++I 
Sbjct: 536 KNIQKAISAGYEKALLTIADANITTLIASLVLFSFGTGAIKGFAVTLSIGIITSMFTAII 595

Query: 815 IAAPILLFIYDWRA 828
           ++  ++  IY  + 
Sbjct: 596 VSRAMINIIYGGKK 609


>gi|167549504|ref|ZP_02343263.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205325305|gb|EDZ13144.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 1037

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIRRRFPLKPR 1035


>gi|184159487|ref|YP_001847826.1| preprotein translocase subunit SecF [Acinetobacter baumannii ACICU]
 gi|183211081|gb|ACC58479.1| Preprotein translocase subunit SecF [Acinetobacter baumannii ACICU]
          Length = 320

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 156/309 (50%), Gaps = 4/309 (1%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           M  +   P  ++    D   I FM+        SIL ++ SI  + T GLN G+DF GG+
Sbjct: 1   MTKVTQQPSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGGV 60

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              +   +P + + V   L+     D   Q     K+ LVR+  Q         +   + 
Sbjct: 61  SAELNYAQPANQAEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQDIKVE---DLNNAIT 117

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K +      + +   + VG ++  EL  +    V ++ I MLIY+ IRF++  A+GA+ +
Sbjct: 118 KAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVMS 177

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  DI   +G FALF   F+LT +AAVL +IG+S+ND +VV DR+R+N +      + R+
Sbjct: 178 LFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPRE 236

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++D ++ ETL R+++TSM   + VL M   GG  +  F++ M  G+ V   SSI+I    
Sbjct: 237 IVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTAF 296

Query: 820 LLFIYDWRA 828
            L+    R 
Sbjct: 297 ALWRGLNRQ 305


>gi|226942352|ref|YP_002797425.1| Hydrophobe/amphiphile efflux-1 HAE1 [Azotobacter vinelandii DJ]
 gi|226717279|gb|ACO76450.1| Hydrophobe/amphiphile efflux-1 HAE1 [Azotobacter vinelandii DJ]
          Length = 1046

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 69/547 (12%), Positives = 148/547 (27%), Gaps = 38/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----GLPINQYPSIAPPAV---------SISVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              N  IT +F      +    +V   LQ 
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYITSDSNSDGNMTITATFEPGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      +++     +       + +  I+    D +  ++   
Sbjct: 114 ATPLLPQEVQQQGIRVTKSVRNFLLIVGFVSEDGSMDRNDLANYIVSNIQDPLSRAKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL     T   +       N       FG            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPARLNNFQLTPVDVRNAVESQNVQVSSGQFGGLPAVPDQQLSA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFRDILLKVNGDGSQVRLDDVAEVGLGGENYSITS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +      A L     P    +           S   
Sbjct: 280 TYNGRPAAGMAIRLATDANALETAQAVRDTLAELEPFFPPGVKVVYPYDTTPVISASIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++  +V
Sbjct: 340 VVKTLGEAIVLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGFTINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +             +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEDGLPPREATRKSMGQIQGALVGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++ +S+  A+    A+   +     +K +      R       
Sbjct: 460 GGSTGVIYRQFSITIVAAMALSVLVALIFTPALCATL-----LKPVSRGEHHRKRGFFGW 514

Query: 538 IAIQFMR 544
               F R
Sbjct: 515 FNRSFER 521



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 83/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   I+          +        +++   + +     ++    
Sbjct: 258 SQVRLDDVAEVGLGGENYSITSTYNGRPAAGMAIRLATDANALETAQAVRDTLAELEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I + +  +  + + + + +++  +     L     + + + 
Sbjct: 318 PPGVKVVYPYDTTPVISASIEEVVKTLGEAIVLVFLVMYLFLQNVRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+
Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMVEDGLPPREATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GGS       F+I +   + ++   ++     +   
Sbjct: 436 GQIQGALVGIALVLSAVFVPMAFFGGSTGVIYRQFSITIVAAMALSVLVALIFTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 89/268 (33%), Gaps = 19/268 (7%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +  G   +   A   V  S   +   +     ++  N       L           
Sbjct: 778  RMTPEDLGKWFVRNAAGTMVPFSAFANGEWTYGPPKLARYNGVSAMEILGEPAPGYSSGE 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + ++    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVERIAEELPPGIGYAWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L +   L F +L G+  ++     +LT +G S  + +++ +  +   
Sbjct: 892  SWSIPFSVMLVVPLGVIGALCFTSLRGLSNDVYFQVGLLTTVGLSAKNAILIVEFAKD-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI-----GSFAIPMAF 803
             L+   ++  +   ++    L   + TS+A  + V+P+AV  G+        +    +  
Sbjct: 950  -LHEQGMALPEAAVEACRMRLRPIIMTSLAFILGVVPLAVSSGAGAGAGSQHAIGTGVIG 1008

Query: 804  GIVVAASSSIFIAAPILL----FIYDWR 827
            G++ A   +IF      +       D R
Sbjct: 1009 GMLTATVLAIFWVPLFYVLVSSLFGDRR 1036


>gi|296314981|ref|ZP_06864922.1| protein-export membrane protein SecF [Neisseria polysaccharea ATCC
           43768]
 gi|296838182|gb|EFH22120.1| protein-export membrane protein SecF [Neisseria polysaccharea ATCC
           43768]
          Length = 311

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 167/303 (55%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L++GD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKMRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVIDLLKKDSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +    I ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +       +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298

Query: 830 NAR 832
            A+
Sbjct: 299 IAK 301


>gi|170767495|ref|ZP_02901948.1| acriflavine resistance protein D [Escherichia albertii TW07627]
 gi|170123829|gb|EDS92760.1| acriflavine resistance protein D [Escherichia albertii TW07627]
          Length = 1037

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVQVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVKLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVINRLDELSQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L        ++ +G     V
Sbjct: 516 NQMFKRNAERYEKGVAKILRRSLRWIMIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQVEKYFFTHEKDNIMSVFATVGSGPGGNGQNVARMFVRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKEFNKIKEARVIA 664



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 89/245 (36%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++++  P 
Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVINRLDELSQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L I   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGIIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA+    
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMAISSGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|16765801|ref|NP_461416.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|16421022|gb|AAL21375.1| RND family aminoglycoside/multidrug efflux pump [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|261247681|emb|CBG25508.1| putative efflux pump [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|301159033|emb|CBW18546.1| putative efflux pump [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
 gi|312913469|dbj|BAJ37443.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321222817|gb|EFX47888.1| putative aminoglycoside efflux pump [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323130811|gb|ADX18241.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
          Length = 1037

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIRRRFPLKPR 1035


>gi|325921779|ref|ZP_08183600.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas gardneri ATCC 19865]
 gi|325547740|gb|EGD18773.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas gardneri ATCC 19865]
          Length = 1047

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++PS  P               + +  + 
Sbjct: 8   RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPA-------------VAITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +K       +   S       ITL+F +    +    +V  
Sbjct: 50  PGASAQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFDNGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +  T      + +     +       + S  +     + I   
Sbjct: 110 KLSLATPLLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     T   +       N        G      + 
Sbjct: 170 EGVGDTTLFGSQ-YAMRVWMDPNKLNNFSLTPVDVRTAIQAQNAQVSAGQLGALPAVANQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        I       
Sbjct: 229 QLNATITAQTRL-------------KTAEQFENILLRTQSDGAQVRLRDVARIELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T+               P                
Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L++ G TL   ++
Sbjct: 336 SIEQVVHTLIEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAVFGFTLNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     +   S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMGEEHLSPKEATRKSMDQISGALVGVALVLAAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSI 523
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +++                 
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVEKGHGLATTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     +   + +  + L ++     +         + +G + + V
Sbjct: 516 NRVFDRGNNRYQGVVRHMLGKGWGYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +     L+ ++   +  Q       F V      G           ++    
Sbjct: 576 QLPPGATDARTGEVLKQVEHHFLVDQKDSVAGVFAVSGFSFAGSGQNTGLAFVKLRPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 ++ +           +    +  
Sbjct: 636 RTGKGQSVTDVAAKAGAFFAGIRDARVFA 664



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 6/242 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +  +   +        L        +++   R ++   ++  +  P
Sbjct: 259 QVRLRDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          R  I + +  +I + + + + +++  + +   L     + + +  
Sbjct: 319 PGMKVQKPYDTTPFVRISIEQVVHTLIEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G  A+FG   N   + A++  IG  V+D +VV + +     +    +S ++   KS++
Sbjct: 379 TFGVLAVFGFTLNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMGEEHLSPKEATRKSMD 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  V  ++      +PMA +GGS       F+I +   + ++   ++ +   +   +
Sbjct: 437 QISGALVGVALVLAAVFVPMAFFGGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATL 496

Query: 824 YD 825
             
Sbjct: 497 LK 498



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 63/169 (37%), Gaps = 9/169 (5%)

Query: 668  KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
             G  G++     +++++    +   W      I  + L +  TL    L     ++    
Sbjct: 869  TGQTGLLYGLSILIVFLCLAALYESWAIPFSVILVVPLGVFGTLLGAMLTWKMNDVYFQV 928

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LT IG +  + +++ +  ++   L+ +  S  D   ++    L   + TS+A  + V+
Sbjct: 929  GLLTTIGLASKNAILIVEFAKE---LHESGKSLIDSALEAARMRLRPILMTSLAFILGVV 985

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+ +    G     +    +  G++     +I       + +     + 
Sbjct: 986  PLVLGSGAGAGAQHALGTAVIGGMLSGTILAILFVPLFFVLVMGLFKRR 1034


>gi|319775889|ref|YP_004138377.1| Protein-export membrane protein SecD [Haemophilus influenzae F3047]
 gi|329123738|ref|ZP_08252298.1| protein-export membrane protein SecD [Haemophilus aegyptius ATCC
           11116]
 gi|317450480|emb|CBY86697.1| Protein-export membrane protein SecD [Haemophilus influenzae F3047]
 gi|327469937|gb|EGF15402.1| protein-export membrane protein SecD [Haemophilus aegyptius ATCC
           11116]
          Length = 616

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + S    N +  GLDLRGG   ++EVD +  +    +   D LR  L+KE I   +++
Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169

Query: 93  QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
             +     ++ A+   +      +                   +       I++ LS   
Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA 
Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278

Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  N +                 D  G+   +  +  + G H+  +++  D  + 
Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
            P V ++ D  G     + T+    KP+A +                             
Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q       QI+G  +I  A  L+ +L++G+L   + IVEER +G  LG+ ++ +G  A 
Sbjct: 399 IQGRFGSNFQITGIDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GLV ++ FM+  Y  +G++A F++ +N++L + L+S+L  ATL++P IAGIVL +G++
Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ERI+EE R  +S+  +++ G++ A+++IFD+N+T ++  ++L+  G G ++G
Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNSAFTSIFDANLTTILTAIILYAVGTGPIQG 578

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           FAIT+ L + ISMFTAI+  RA++  +   K++K +
Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +GI   +   +A++ ++   +K  F + A   L+++I   +G  ++  
Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G SV+  V++++R+++ ++      S +  I++  N        
Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNSAFTSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   I  FAI ++ G+ ++  ++I     ++  +Y  +    
Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613


>gi|260557108|ref|ZP_05829324.1| protein-export membrane protein SecF [Acinetobacter baumannii ATCC
           19606]
 gi|332873842|ref|ZP_08441783.1| export membrane protein SecF [Acinetobacter baumannii 6014059]
 gi|260409214|gb|EEX02516.1| protein-export membrane protein SecF [Acinetobacter baumannii ATCC
           19606]
 gi|322509400|gb|ADX04854.1| secF [Acinetobacter baumannii 1656-2]
 gi|323519421|gb|ADX93802.1| preprotein translocase subunit SecF [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332737946|gb|EGJ68832.1| export membrane protein SecF [Acinetobacter baumannii 6014059]
          Length = 321

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 4/310 (1%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M  +   P  ++    D   I FM+        SIL ++ SI  + T GLN G+DF GG
Sbjct: 1   MMTKVTQQPSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +   +   +P + + V   L+     D   Q     K+ LVR+  Q         +   +
Sbjct: 61  VSAELNYAQPANQAEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQDIKVE---DLNNAI 117

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K +      + +   + VG ++  EL  +    V ++ I MLIY+ IRF++  A+GA+ 
Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  DI   +G FALF   F+LT +AAVL +IG+S+ND +VV DR+R+N +      + R
Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +++D ++ ETL R+++TSM   + VL M   GG  +  F++ M  G+ V   SSI+I   
Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 297 FALWRGLNRQ 306


>gi|240112287|ref|ZP_04726777.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae MS11]
 gi|240117316|ref|ZP_04731378.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID1]
 gi|240127577|ref|ZP_04740238.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268598354|ref|ZP_06132521.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae MS11]
 gi|268603016|ref|ZP_06137183.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID1]
 gi|268685961|ref|ZP_06152823.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268582485|gb|EEZ47161.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae MS11]
 gi|268587147|gb|EEZ51823.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae PID1]
 gi|268626245|gb|EEZ58645.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 311

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 95/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L   GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVARGLNFSVEFTGGTVMEVQYQQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L++GD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKMRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +    I ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVNNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +       +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALRGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298

Query: 830 NAR 832
            A+
Sbjct: 299 IAK 301


>gi|290967878|ref|ZP_06559428.1| protein-export membrane protein SecF [Megasphaera genomosp. type_1
           str. 28L]
 gi|290782017|gb|EFD94595.1| protein-export membrane protein SecF [Megasphaera genomosp. type_1
           str. 28L]
          Length = 319

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/289 (25%), Positives = 148/289 (51%), Gaps = 1/289 (0%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           ++   ++ R W   +S +  + S+  +F HG N+GID+ GG  L +   + V ++ VR+ 
Sbjct: 1   MSFDIVKHRKWWFSLSAILVLLSLISIFVHGFNFGIDYTGGTILDMQFKQEVTVAQVRTV 60

Query: 598 LESLQIG-DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           ++   I    +     G  +     +         T   + V +++ + +  + ++ TE 
Sbjct: 61  VDHSSIKLGNTVIQLSGVTDQSASKEVMLRMRNLTTEESKTVAQELNDKLGGAEVKRTES 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  I  E+ +  I+ + ++ I +  YI  RF++  A+ AI +++ D+   LG F+ F +
Sbjct: 121 VGAVIGSEVTKNAILNLAVAFIVLAAYISFRFEYKIAVSAIISILHDLIMVLGVFSFFHL 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           E + + +AA+LT+IGYS+N+ VV++DR+R+N + +  + S+  L   SI + + RS YT 
Sbjct: 181 EIDASFLAAILTVIGYSMNEAVVIFDRVRENTRTHRRTDSYEKLAHDSIAQNIHRSFYTL 240

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                +   +  +GG    +F++ M  G +  A SSI +   + +   +
Sbjct: 241 ATVLFACGALHFFGGESTKNFSLVMLIGFISGAYSSICVDTSLWVVWKN 289


>gi|16761398|ref|NP_457015.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29140905|ref|NP_804247.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|207857892|ref|YP_002244543.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213649876|ref|ZP_03379929.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289828738|ref|ZP_06546528.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25318729|pir||AE0816 probable efflux pump STY2719 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503697|emb|CAD07711.1| putative efflux pump [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29136530|gb|AAO68096.1| putative efflux pump [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|206709695|emb|CAR34045.1| putative efflux pump [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
          Length = 1037

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKNNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|291282382|ref|YP_003499200.1| putative multidrug-efflux transport protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|290762255|gb|ADD56216.1| putative multidrug-efflux transport protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|320659210|gb|EFX26799.1| putative multidrug-efflux transport protein [Escherichia coli
           O55:H7 str. USDA 5905]
          Length = 1029

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +  +          +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +      K      + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDKGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFDRFYRRT 519

Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592
               Q       R     + +   +     L    L           ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDKGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489


>gi|168466776|ref|ZP_02700630.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195630739|gb|EDX49331.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 1037

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|320653510|gb|EFX21615.1| putative multidrug-efflux transport protein [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
          Length = 1029

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +  +          +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +      K      + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDKGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFDRFYRRT 519

Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592
               Q       R     + +   +     L    L           ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDKGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489


>gi|309786045|ref|ZP_07680674.1| acriflavine resistance protein B [Shigella dysenteriae 1617]
 gi|308926156|gb|EFP71634.1| acriflavine resistance protein B [Shigella dysenteriae 1617]
          Length = 1049

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVATNMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVIYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + I++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVIYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALHESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|168238214|ref|ZP_02663272.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194738041|ref|YP_002115543.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713543|gb|ACF92764.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197288912|gb|EDY28285.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 1037

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERTTKAFNQIKEARVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|284929230|ref|YP_003421752.1| protein translocase subunit secF [cyanobacterium UCYN-A]
 gi|284809674|gb|ADB95371.1| protein translocase subunit secF [cyanobacterium UCYN-A]
          Length = 311

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/311 (26%), Positives = 162/311 (52%), Gaps = 15/311 (4%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY----GIDFKGGIQLGVLAN----- 586
             + I   R  +W +  +I+ S     L+     N     G+DF GG +L +        
Sbjct: 1   MKLNIIKWRKAWWFISSTIILSSIIGILISYSKFNAPLKLGLDFVGGTRLQLQLECEIQK 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + +     +   + L   +++       +N ++ +Q +  D   +T + + +  K+ +  
Sbjct: 61  KCITPIDTKIVRDILSTRNLNDNTIQVLENNILSIQTKALDVEQRTELQKELNNKVGKFD 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P       + VGP I  EL + GI+ +++S + ++ Y+ +RFK  +A  AI  L+ D+  
Sbjct: 121 PE--TIQIDTVGPTIGWELFKSGILALLVSFLGIVFYLSVRFKIDYAFFAILALVHDVLI 178

Query: 707 TLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           T+G F+  G    IE N   + ++LT+IG+SVND VV+YDR+R+N+  ++  +   ++++
Sbjct: 179 TVGCFSFLGLFASIEVNSLFLVSLLTIIGFSVNDTVVIYDRIRENIDRFSEELPLSEIVN 238

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           KS+N+TL RS+ T+    + ++ + ++GG  I  FA+ +  G  V + SSIFIA+ +L +
Sbjct: 239 KSVNQTLARSINTTATTLLPLISLFLFGGETIKYFALALILGFSVGSYSSIFIASTLLAW 298

Query: 823 IYDWRAKNARI 833
             + +  N ++
Sbjct: 299 WREPKLSNIKL 309


>gi|302389927|ref|YP_003825748.1| protein-export membrane protein SecF [Thermosediminibacter oceani
           DSM 16646]
 gi|302200555|gb|ADL08125.1| protein-export membrane protein SecF [Thermosediminibacter oceani
           DSM 16646]
          Length = 284

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 83/281 (29%), Positives = 148/281 (52%), Gaps = 6/281 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            ++   GIS+      +  L T GLN+GIDF GG  L     +P  L   +  +ES  + 
Sbjct: 3   RKWLWFGISLAVIALGLFYLVTRGLNWGIDFTGGDILHYNIGQPYSLDEAKKLMESFNLR 62

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            +  +    ++  L+                + + + I +  P + +   E V   I +E
Sbjct: 63  TVEVREAGDDRQELIVRTVV-----LTADQQKKITEAIRQKWPQAQLIRAERVDAVIGKE 117

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L R+ ++ +II+ I +LIY+  RF++   + AI  L+ D+   + F+A+F I  + T +A
Sbjct: 118 LQRQALIALIIANIGVLIYVAFRFEFKSGVAAILALVHDVLVMISFYAIFYIPVDTTFIA 177

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +V++DR+R+N+K+     SF ++ + SI +TL RS+ TS+   +S++
Sbjct: 178 AILTVVGYSINDTIVIFDRIRENLKIMGK-ASFNEIANTSIVQTLARSINTSITTLLSII 236

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   GG  I  F + +  GI+    S+IFIA+P+      
Sbjct: 237 ALYFLGGETIKDFTLALIVGIMSGVYSTIFIASPLWSMFRG 277


>gi|269138317|ref|YP_003295017.1| preprotein translocase subunit SecD [Edwardsiella tarda EIB202]
 gi|267983977|gb|ACY83806.1| preprotein translocase subunit SecD [Edwardsiella tarda EIB202]
 gi|304558348|gb|ADM41012.1| Protein-export membrane protein SecD [Edwardsiella tarda FL6-60]
          Length = 618

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 160/527 (30%), Positives = 282/527 (53%), Gaps = 43/527 (8%)

Query: 30  SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H +++VD D  ++   +   D LRS L+ +GI
Sbjct: 104 NLAPATPKWLAMVGAEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLRDKGI 163

Query: 87  GVFSMR----QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
              ++R         + ++F D+                 ++ L+   +  +     +  
Sbjct: 164 PYSTIRKLPDPASGGVEINFRDA-----------AARDAASNYLSPRHRDLVFSNAGDTT 212

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           +  V++ + + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R 
Sbjct: 213 LKAVMTDDRLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARA 272

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGA 257
           +++LG TA + F  V  N   +    G            DG   ++  +V ++G H+  +
Sbjct: 273 KEILGATATLEFRLVNSNVDAQAAASGRVPGDSEVKYTRDGRPVVLYKRVILTGDHITDS 332

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP----------- 306
           T++   + ++P V+IS D  G       T+DNIGKP+A +      +             
Sbjct: 333 TSS-QDEFNRPQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKKDASGKPILEK 391

Query: 307 -------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  
Sbjct: 392 QEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQ 451

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIA 418
           +I +G  A + GLV  ++FM+V Y K+GL+A  ++  N+++ + ++SLL  ATLT+P IA
Sbjct: 452 NIEQGLEACLWGLVASIIFMVVYYKKFGLIATTALLANLVMIVGIMSLLPGATLTMPGIA 511

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GIVL + +AVD+N+L+NERI+EE R  ++V  ++  G+  A+S+I D+N+T LI  V+L+
Sbjct: 512 GIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILY 571

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             G G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 572 AVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 618



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     ++ + +        N    ++ L       G           +  +   
Sbjct: 372 FVEYKDSGKKDASGKPILEKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGA 431

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   +A +I++ + +K  F L A T L+ ++
Sbjct: 432 LIAPIQIVEERTIGPTLGMQNIEQGLEACLWGLVASIIFMVVYYK-KFGLIATTALLANL 490

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      + +  I +
Sbjct: 491 VMIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHE 547

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    +  ++   I+ + +   G   I  FAI  A G+  +  ++I     I+  +
Sbjct: 548 GYKGAFSSIIDANVTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLL 607

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 608 YGGKRINK 615



 Score = 38.5 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 29/118 (24%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  I+  +   IGLL ALPN   +                          +     
Sbjct: 4   RYPLWKYIMLIVALVIGLLYALPNLYGEDPA---------------------VQIT-GAR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                   L    D L        I   S+      I   F D+  +    + +   L
Sbjct: 42  GVAASESTLVQVRDVLEKQ----HIPSKSIALENGAILARFTDTDIQLRAREALVDTL 95


>gi|283780063|ref|YP_003370818.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pirellula staleyi DSM 6068]
 gi|283438516|gb|ADB16958.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pirellula staleyi DSM 6068]
          Length = 1098

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 72/689 (10%), Positives = 186/689 (26%), Gaps = 33/689 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD- 61
              +  ++  +I   G +           + ++P   P                 ++V  
Sbjct: 8   RPIFAAVISIIITLAGGIAVF-----ILPVAQYPEITPP---------------TVQVSC 47

Query: 62  -EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKV 115
                 +  +    +  +   +   E +   S +   +    +T++F      +     V
Sbjct: 48  FYPGASSKVVADTVASPIEQQVIGVENMLYMSSQSTNDGGYNLTVTFEVGTNLDMAQVLV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +      L  + K+  +    +    +++            +  S     Q  D++ 
Sbjct: 108 QNRVNLALPSLPSEVKQTGVSVKKKSPNILLVVNLISPTGDYDQLYLSNYATIQIRDELA 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         ++   +    DP+++       + +       N        G   +  
Sbjct: 168 QIKGVGDVTYLGQLDYSMRVWLDPNKMASRNLAASDVVAALREQNVQVAAGALGRPPVPA 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
               QY +     ++     G       +  +                +     I     
Sbjct: 228 GQAFQYTLSTLGRLTQPEEFGDIIVKTGENGQLTRMRDLVTDPREDSTKRLFGGIQLGAK 287

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  L A          +   +   T          L+          +        
Sbjct: 288 NEDTSCALDAQPSIGLAIFQQPGSNALTTAALIRERMEELKKSFPKGLDFAIVYDTTPFI 347

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S             LV IV+   +   +  ++   ++ + +I T A++  LG +L   
Sbjct: 348 DESIKEVFKALRDAIILVAIVVLAFLQSWRATVIPLIAVPVAIIGTFAVMLGLGFSLNNL 407

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALI 472
           S+ G+VL IG+ VD  I+V E +        S   +           I   +   +   I
Sbjct: 408 SLFGLVLAIGIVVDDAIVVVEAVEHHLEHGLSPKEAATKAMQEVTGPIIAISLVLMCVFI 467

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
               +    G   R FA+T+ +S   S   ++++  A+   +++ K  +S  +       
Sbjct: 468 PCAFISGITGQFFRQFALTIAVSTFFSAVNSLTLSPALCGLLLKPKHEQSDPLT-RLINL 526

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L+     +  +         S    +     +    +  G+ +    +   +    +   
Sbjct: 527 LLGWFFKLFNLGFTSAANWYSKSVGMMLRVSVIVLAVYGGLLYLTYYEFTSVPTGFIPSQ 586

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                L  +++ D +       K  + +++     + A     +              I 
Sbjct: 587 DKGYLLVDVRLPDSASLER--TKEVMAQVERIARGAGAAADAHDESHDHGHGESKSGGIP 644

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAML 681
                     + +++  I     +   +L
Sbjct: 645 GVAHTITISGQSIVQNAIGSNFGTVYVIL 673



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 74/204 (36%), Gaps = 7/204 (3%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             Q    +++    ++    +++ +  P                E I++    +  + I 
Sbjct: 305 IFQQPGSNALTTAALIRERMEELKKSFPKGLDFAIVYDTTPFIDESIKEVFKALRDAIIL 364

Query: 680 MLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + I +      W   +  +  + + I  T       G   N  ++  ++  IG  V+D +
Sbjct: 365 VAIVVLAFLQSWRATVIPLIAVPVAIIGTFAVMLGLGFSLNNLSLFGLVLAIGIVVDDAI 424

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIG 795
           VV + +          +S ++   K++ E  G  +  S+      +P   + G  G    
Sbjct: 425 VVVEAV---EHHLEHGLSPKEAATKAMQEVTGPIIAISLVLMCVFIPCAFISGITGQFFR 481

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ +A     +A +S+ ++  +
Sbjct: 482 QFALTIAVSTFFSAVNSLTLSPAL 505



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +  ++      G++ N+      + L+G +  + +++ +  ++  
Sbjct: 937  SLTLPLAVILVVPMCLLCSVVGVDWAGLDINIFVQIGFVVLVGLASKNAILIVEFAKEKT 996

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                   S  D   ++    L   + TS+A  + V+P+A+    G  +  +  I +  G+
Sbjct: 997  AQ---GASPADATVEACRLRLRPIIMTSLAFILGVVPLAIAVGAGAEMRSTLGIAVFSGM 1053

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      IF+       +  
Sbjct: 1054 LGVTLFGIFLTPVFYYLVVK 1073


>gi|226946083|ref|YP_002801156.1| preprotein translocase subunit SecF [Azotobacter vinelandii DJ]
 gi|226721010|gb|ACO80181.1| SecF protein [Azotobacter vinelandii DJ]
          Length = 304

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 163/292 (55%), Gaps = 5/292 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM  R      +++ ++ S+  L   GLN+G+DF GG  + +   RPV+LS VR
Sbjct: 1   MKRVINFMGIRRVAFVATLVLTLLSLVSLAVRGLNFGLDFTGGTLIELSYERPVELSDVR 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + LE+   GD   Q+F    + LVRL+        Q         + +      T++  E
Sbjct: 61  AGLETAGYGDALVQSFGATTDVLVRLK----GDDPQLGEKVASALRQSASDNPMTVKRAE 116

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL  +G +G++++   +L+Y+  RF+W F  GA+ +L  D+  TLG F+   
Sbjct: 117 FVGPAVGEELRDQGGLGMLLALGGILVYVAFRFQWKFGCGAVLSLFHDVIVTLGVFSFLQ 176

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I F+LT +AAVL +IGYS+ND +VV+DR+R+N +L        + I+ S  +TL R++ T
Sbjct: 177 IPFDLTVLAAVLAIIGYSLNDTIVVFDRIRENFRLLRK-ADLVENINISTTQTLLRTMAT 235

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           S++  +++L + ++GG  +  F++ +  G++    SSI+IA  +L+++   R
Sbjct: 236 SISTLLAILALMLFGGEPLWGFSLALFIGVMAGTYSSIYIANVVLIWLKLTR 287


>gi|298370063|ref|ZP_06981379.1| protein-export membrane protein SecF [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281523|gb|EFI23012.1| protein-export membrane protein SecF [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 311

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFRIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYRQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++  R  LE+L++GD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKTREKLETLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNDVMNLLKQENPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ + +    +++Y+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGDELVTNGLMALGMVVAGIIVYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FALF  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +     + +   +ID +I  T+
Sbjct: 179 FALFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRNHTVPQVIDNAITSTM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R+  T  +    VL M ++GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTAITHGSTEAMVLSMLIFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLNREN 298

Query: 830 NAR 832
            A+
Sbjct: 299 IAK 301


>gi|194445019|ref|YP_002041740.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194403682|gb|ACF63904.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 1037

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|197250569|ref|YP_002147433.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197263111|ref|ZP_03163185.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197214272|gb|ACH51669.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241366|gb|EDY23986.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|322613780|gb|EFY10719.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619477|gb|EFY16353.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624982|gb|EFY21811.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629575|gb|EFY26351.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633995|gb|EFY30732.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635567|gb|EFY32278.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639938|gb|EFY36612.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644379|gb|EFY40920.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652094|gb|EFY48456.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322655257|gb|EFY51566.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658304|gb|EFY54570.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322664304|gb|EFY60501.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322669472|gb|EFY65621.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673199|gb|EFY69305.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322676590|gb|EFY72658.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683341|gb|EFY79355.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685773|gb|EFY81766.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192549|gb|EFZ77778.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323199595|gb|EFZ84686.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201247|gb|EFZ86315.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208077|gb|EFZ93022.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210200|gb|EFZ95101.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217066|gb|EGA01788.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220595|gb|EGA05044.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323229245|gb|EGA13369.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235440|gb|EGA19524.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237374|gb|EGA21437.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245129|gb|EGA29130.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248832|gb|EGA32758.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323253119|gb|EGA36951.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323255918|gb|EGA39663.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323260964|gb|EGA44561.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323266400|gb|EGA49888.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269769|gb|EGA53219.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 1037

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|161612770|ref|YP_001586735.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161362134|gb|ABX65902.1| hypothetical protein SPAB_00469 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1037

 Score =  202 bits (513), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSAGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|110833365|ref|YP_692224.1| preprotein translocase subunit SecF [Alcanivorax borkumensis SK2]
 gi|110646476|emb|CAL15952.1| Preprotein translocase SecF subunit [Alcanivorax borkumensis SK2]
          Length = 307

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 153/292 (52%), Gaps = 3/292 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            + I FM AR     +S+   I S+ LL T GLN G+DF GG  + V +   V+LS  R 
Sbjct: 5   PMNINFMAARKPLGVLSLALVIISVVLLLTRGLNLGLDFTGGTTVVVKSPTDVELSQARD 64

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L     GD   Q++   K   +R+   P D     +V + V   + E      +   E 
Sbjct: 65  DLTEAGFGDAVVQHYGSPKEVNIRV--APKDDADADKVGQNVFNVLKEHNADLELLKVEF 122

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +    ++++   M++Y+W RF   F +  +  L  D+   LG FAL   
Sbjct: 123 VGPQVGDELRDESGTAMLLALGLMMLYVWFRFSNKFGVATVLALFHDVIIVLGLFALIQW 182

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            F+LT +AAVL LIGYS+ND +VV DR+R++ +  T       +I+ ++N+T  R++ TS
Sbjct: 183 PFDLTVLAAVLALIGYSLNDSIVVADRIREDFRS-TRETDPVAIINGAVNQTFTRTINTS 241

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   + ++ +  +GG V+ +F+  +  G++V   SSI++ + IL  +   + 
Sbjct: 242 VTTLLVLVALYFFGGEVMRAFSEALLVGVLVGTYSSIYVVSNILFMMKVSKE 293


>gi|302343216|ref|YP_003807745.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfarculus baarsii DSM 2075]
 gi|301639829|gb|ADK85151.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfarculus baarsii DSM 2075]
          Length = 1055

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL           + ++P+  P             + + ++   
Sbjct: 8   RPIFAWVIAIVIMLAGLLAI-----GTLPVAQYPAIAP-------------TAVQIDATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +K       I   S       I L+F      +    +V  
Sbjct: 50  PGASAKTLEDTVTQVIEQKMKGIDHLSYISSTSDSAGSASIILTFDAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L  D +K  +  +      +++     +      I+ S  +     D +   
Sbjct: 110 KLQLAMSLLPQDVQKQGVRVSKASASFLMVVGFYSEDGSMSPIDLSDYVAAHVQDVLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L       + +       N        G     +  
Sbjct: 170 DGVGDVTLFGSQ-YAMRVWLDPNKLNNYKLMPSDIEAAIQAQNVQVSAGQLGGAPAVEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        I       
Sbjct: 229 QLNATIAAQSRL-------------QTPEQFGDILLRVNTDGSKVLLRDVARIELGSENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A +          +           
Sbjct: 276 ETIPRFNGKPSAGLAIKLTTGANALDTSTAVRQELAEMSKLFPAGMKVVYPYDTTPFVRV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+F+ +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SIEEVVKTLAEAIVLVFLVMFLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMRDEGLSPKEATRKSMDQITGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVVVALVLTPALCATMLKPLDGHDHQAKRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +                 R   + +   +L    S+  L         + +G I   V
Sbjct: 516 NRSFQRGNQACQTVSGSIIRRWPRYMLLYVLLIGGMSLMFLRLPTSFLPDEDQGFIMTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++ ++   +  +    +  F V      G            K    
Sbjct: 576 QLPPGATQERTLEVMKEVERHYLQDEKDTVKCIFTVVGFSFAGQGQNMGMAFIDFKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              P            +    +    +  
Sbjct: 636 RNSPELRADAVAGRAMQAFSGIRDAMVFA 664



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 73/180 (40%), Gaps = 8/180 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             S A  + L  + K     + +    +T         E+++     +++  + M +++ 
Sbjct: 301 DTSTAVRQELAEMSKLFPAGMKVVYPYDTTPFVRVSIEEVVKTLAEAIVLVFLVMFLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G  A FG   N   + A++  IG  V+D +VV + + 
Sbjct: 361 ---NFRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +S ++   KS+++  G  V  +M      +PMA +GGS       F+I + 
Sbjct: 417 -ERVMRDEGLSPKEATRKSMDQITGALVGIAMVLSAVFVPMAFFGGSTGVIYRQFSITIV 475



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 73/202 (36%), Gaps = 9/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E ++        L      +  G      L       +  +S + + + +   ++ W   
Sbjct: 837  EAMRAMEELASKLPAGIGYQWTGLSYQERLSGSQAPALYALSTLVVFLCLAALYESWSIP 896

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +    L+  
Sbjct: 897  FAVLLAVPLGVIGALLATSLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKD---LHEK 953

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
             +       +++   L   + TSMA  + VLP+A+    G     +    +  G++ A  
Sbjct: 954  GMDLVKATIEALRLRLRPIIMTSMAFILGVLPLAITTGAGAGSQNAIGTGVMGGMISATV 1013

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
              + I  P+   I      + +
Sbjct: 1014 LGV-ILVPLFFVIVRRFFGDKK 1034


>gi|283788091|ref|YP_003367956.1| acriflavin resistance protein F [Citrobacter rodentium ICC168]
 gi|282951545|emb|CBG91244.1| acriflavin resistance protein F [Citrobacter rodentium ICC168]
          Length = 1037

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/684 (10%), Positives = 188/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G L  L     Q  + ++P+  P                     
Sbjct: 7   QRPIFAWVLAIILMLAGALAIL-----QLPVAQYPTIAPPAV---------SVSATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPQTTQDDISDYVASNVKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPDEFAKVTLRVNSDGSVVRLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T        A L          +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELEPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIVLVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     +++     + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526
           FGG      R F+IT+  ++ +S+  A+ +  A+   +           +       +  
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKGGFFGWFNAR 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    + ++    +   + V   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRKTGRYLVVYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 AGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERSG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             +++++      +   ++    +
Sbjct: 639 EENSVESVIARATRAFSQIRDGMV 662



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +      + L        +++     ++    ++    P 
Sbjct: 260 VRLKDVARIELGGENYNVVARINGKPASGLGIKLATGANALDTATAIKAKLAELEPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVVYPYDTTPFVKISIHEVVKTLFEAIVLVFLVMYLFLQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMALMENLASKLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|200387973|ref|ZP_03214585.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605071|gb|EDZ03616.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 1037

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|204929544|ref|ZP_03220618.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204321263|gb|EDZ06463.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 1037

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +  ++L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYALLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|145637216|ref|ZP_01792878.1| preprotein translocase subunit SecD [Haemophilus influenzae PittHH]
 gi|145269661|gb|EDK09602.1| preprotein translocase subunit SecD [Haemophilus influenzae PittHH]
          Length = 605

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + S    N +  GLDLRGG   ++EVD +  +    +   D LR  L+KE I   +++
Sbjct: 99  PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 158

Query: 93  QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
             +     ++ A+   +      +                   +       I++ LS   
Sbjct: 159 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 207

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA 
Sbjct: 208 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 267

Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  N +                 D  G+   +  +  + G H+  +++  D  + 
Sbjct: 268 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 327

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
            P V ++ D  G     + T+    KP+A +                             
Sbjct: 328 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 387

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q       QI+G  +I  A  L+ +L++G+L   + IVEER +G  LG+ ++ +G  A 
Sbjct: 388 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 447

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GLV ++ FM+  Y  +G++A F++ +N++L + L+S+L  ATL++P IAGIVL +G++
Sbjct: 448 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 507

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ERI+EE R  +S+  +++ G++ A+++IFD+N+T ++  ++L+  G G ++G
Sbjct: 508 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 567

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           FAIT+ L + ISMFTAI+  RA++  +   K++K +
Sbjct: 568 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 603



 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +GI   +   +A++ ++   +K  F + A   L+++I   +G  ++  
Sbjct: 430 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 488

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G SV+  V++++R+++ ++      S +  I++  N        
Sbjct: 489 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 545

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   I  FAI ++ G+ ++  ++I     ++  +Y  +    
Sbjct: 546 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 602


>gi|118594455|ref|ZP_01551802.1| protein export protein SecF [Methylophilales bacterium HTCC2181]
 gi|118440233|gb|EAV46860.1| protein export protein SecF [Methylophilales bacterium HTCC2181]
          Length = 311

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 93/288 (32%), Positives = 155/288 (53%), Gaps = 3/288 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM+ R     IS L  + +I  L   GLN G+DF GG  + V      ++  +R  L 
Sbjct: 10  IPFMKYRGISAVISTLIFVLAIAFLSIKGLNLGVDFTGGTIMEVSYPEAANIENIRETLV 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +L + D   QNF    + L+RL   P   ++   + E V   +        I   E VG 
Sbjct: 70  TLDLTDTQVQNFGTANDVLIRLPIIP--DLSIAELSEKVAVALKAGNRDVEIMRVESVGA 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  EL   G + ++   + +++Y+ +RF+W FA+ AI   + D+   LGFFA F  EFN
Sbjct: 128 QVGDELYEDGALAILFVCLGIVLYLTMRFEWRFAIAAIVANLHDVIIILGFFAFFQWEFN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AAVL ++GYSVN+ VVV+DR+R+N +      S  D+I+ +I  T+ R++ T ++ 
Sbjct: 188 LTVLAAVLAVLGYSVNESVVVFDRVRENFRKMRK-ASVEDVINNAITRTMSRTIMTHLST 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              V+ M ++GG ++ +FA+ +  GI+    SSI +  P+ +++   +
Sbjct: 247 QTVVISMLIFGGEILNNFALALTIGILFGIYSSIMVGCPLAMWLGTSQ 294


>gi|50085971|ref|YP_047481.1| acridine efflux pump [Acinetobacter sp. ADP1]
 gi|49531947|emb|CAG69659.1| putative RND family (AdeB-like) [Acinetobacter sp. ADP1]
          Length = 1059

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 67/552 (12%), Positives = 150/552 (27%), Gaps = 41/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPK-------------VTISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAQTVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIELNFEQGIDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVKVTKSGASFMQVIAFYSPDGSLSGSDIKDYVNSNISEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + +S      N        G     D  
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDISTALNAQNAQVAVGQLGGAPAVDGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +     +        +       
Sbjct: 229 VLNATVNAQSLL-------------QTPEQFRNIFLKNTSTGAKVLLKDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        LR        + +          
Sbjct: 276 QFDSKFDGKPAGGVAIKLATGANALDTAKAVEARLVELRKNYPAGLKDKLAYDTTPFIRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A+++L G T+   ++
Sbjct: 336 SIESVVHTLIEAIVLVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINLFGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL----DMGFSRAYSTIFDSNITALIA 473
             +VL IGL VD  I+V E +     +  +   +         S A   I        I 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATEQSMQQISGALIGITSVLSAVFIP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
                   G   R F+IT+  ++++S+  A++   A+   +++       + N +   F 
Sbjct: 456 MAFFSGTTGVIYRQFSITLVTAMVLSLVIALTFTPALCATLLKQHDPNKKESNHIFARFF 515

Query: 534 IPDCIAIQFMRA 545
                    +  
Sbjct: 516 RWFNRTFDRLSH 527



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 86/254 (33%), Gaps = 8/254 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V              +        +        +++   + +E    ++ 
Sbjct: 255 STGAKVLLKDVARVELGSDNYQFDSKFDGKPAGGVAIKLATGANALDTAKAVEARLVELR 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               R  I   +  +I + + + I +++  + W   +     + +
Sbjct: 315 KNYPAGLKDKLAYDTTPFIRLSIESVVHTLIEAIVLVFIVMFLFLQNWRATIIPTLAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     LFG   N   + A++  IG  V+D +VV + +     +           +
Sbjct: 375 VVLGTFAVINLFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATE 432

Query: 763 KSINETLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAP 818
           +S+ +  G  +  TS+ +    +PMA + G   VI   F+I +   +V++   ++     
Sbjct: 433 QSMQQISGALIGITSVLS-AVFIPMAFFSGTTGVIYRQFSITLVTAMVLSLVIALTFTPA 491

Query: 819 ILLFIYDWRAKNAR 832
           +   +      N +
Sbjct: 492 LCATLLKQHDPNKK 505



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 72/244 (29%), Gaps = 13/244 (5%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            E         +        +         S    + +E +  K+  +           + 
Sbjct: 810  EWTYGSPRLERYNGVSSVNIQGSPATGVSSGDSMKAMEEIVNKLPSMGLQGFDYEWTGLS 869

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL----DITKTLGFFALF 714
             +      +   +  +   I  L    +   W      +  + L     +  T     + 
Sbjct: 870  LEERESGAQAPFLYALSLLIVFLCLAALYESWSIPFSVLLVVPLGVVGAVLLTYLGMVIK 929

Query: 715  G---IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            G   +  N+    A++ +IG S  + +++ +  ++   L        +    +    L  
Sbjct: 930  GDPNLSNNIYFQVAMIAVIGLSAKNAILIVEFAKE---LQEKGEDLLEATLHAAKMRLRP 986

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + T++A    VLP+A+    G     S    +  G++ +    IF      ++I     
Sbjct: 987  IIMTTLAFGFGVLPLALASGAGAGSQHSVGYGVLGGVITSTLLGIFFIPIFFVWIRGVFK 1046

Query: 829  KNAR 832
               +
Sbjct: 1047 YKPK 1050


>gi|87121908|ref|ZP_01077793.1| secretion protein SecD [Marinomonas sp. MED121]
 gi|86162706|gb|EAQ63986.1| secretion protein SecD [Marinomonas sp. MED121]
          Length = 615

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 156/523 (29%), Positives = 273/523 (52%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +++   P  +         LGLDLRGG H +LEVD    +   +++ S E+++ L+++ +
Sbjct: 105 NLVPTTPDWLASFGAGPAKLGLDLRGGVHFLLEVDTPAALEQRMEVASAEMKTLLRQQKV 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +      + + F    F       ++               +          +   
Sbjct: 165 RYRKVSVDAGVLKIRFLQQAFLTRAETLLSEEFPEYIYSTQAQEGEFY--------LMAS 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            S+++  ++ ++A++Q++  +R R++++G++E  +QR GS+RI+++LPG QD +  ++++
Sbjct: 217 YSESSKAEIEAYALQQNLTTLRNRVNELGVAEPLVQRQGSNRIVVELPGVQDTAAAKRII 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F    P    +     V   RD  G    +E  + I+G  ++ A+++FD    
Sbjct: 277 GATANLEFRLEAP---LEADDVEVMTFRDGSGRTARLERDLIITGDSVSDASSSFDENGM 333

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
              V+IS D  G ++  +VTR ++G+ +AVV       +  +                  
Sbjct: 334 PQ-VNISLDSKGGKQMAKVTRTSVGRNMAVVFIEHKSRSRFVEDENGKAQEVRQSYSEKG 392

Query: 309 ------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q       +I+G  +   +  LA +LRAG+L   +  VEER VG  LG ++I 
Sbjct: 393 IISLATIQTTLGNAFRITGLDSSRESSELALLLRAGALAAPIYFVEERTVGPSLGEENIR 452

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G  +   GL++++LFM+  Y  +GL A+ S+ +N++L +A +SLLGATLTLP IAGIVL
Sbjct: 453 LGVVSAQIGLLVVMLFMLAYYRVFGLFANISLAINIVLLMACMSLLGATLTLPGIAGIVL 512

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+L+  RI+EE         ++  GF+RA++TI D+NIT L+  V+LF  G 
Sbjct: 513 TMGMAVDANVLIFSRIKEELASGLPTQQAIYSGFNRAFTTILDANITTLLVAVILFAVGT 572

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G+V+GFA+T+ L I+ SMFTAI + RA    +   +K   + I
Sbjct: 573 GSVKGFAVTLSLGIITSMFTAIIVTRAQANLVYGGRKDARLSI 615



 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 100/248 (40%), Gaps = 5/248 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +R V+    ++        +    +    +  L       G   ++      +  +   +
Sbjct: 371 SRFVEDENGKAQEVRQSYSEKGIISLATIQTTLGNAFRITGLDSSRESSELALLLRAGAL 430

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                      VGP +  E IR G+V   I  + +++++   ++  F L A  +L ++I 
Sbjct: 431 AAPIYFVEERTVGPSLGEENIRLGVVSAQIGLLVVMLFMLAYYRV-FGLFANISLAINIV 489

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +   +L G    L  +A ++  +G +V+  V+++ R+++ +    + +  +  I    
Sbjct: 490 LLMACMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIKEELA---SGLPTQQAIYSGF 546

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           N      +  ++   +  + +   G   +  FA+ ++ GI+ +  ++I +       +Y 
Sbjct: 547 NRAFTTILDANITTLLVAVILFAVGTGSVKGFAVTLSLGIITSMFTAIIVTRAQANLVYG 606

Query: 826 WRAKNARI 833
            R K+AR+
Sbjct: 607 GR-KDARL 613



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 52/189 (27%), Gaps = 32/189 (16%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +GLL ALPN  P                             L++ 
Sbjct: 4   KYPLWKYLLILFVLALGLLYALPNLYPDDPA-------------------------LQLS 38

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                    +    +    L+K  I + +     N  TL F     +      V   L  
Sbjct: 39  TQKATVSIDENVISKAERALEKANIELKASELTSNGATLRFNSGIDQLAAKPVVAAALGE 98

Query: 122 ----VNSKLNVDPKKNLLVTTTEKEISIVL---SQNNIDQVISHAIEQSMEIIRQRIDQI 174
                 + +   P           ++ + L       ++     A+EQ ME+    +  +
Sbjct: 99  NYVTALNLVPTTPDWLASFGAGPAKLGLDLRGGVHFLLEVDTPAALEQRMEVASAEMKTL 158

Query: 175 GISESTIQR 183
              +    R
Sbjct: 159 LRQQKVRYR 167


>gi|239501674|ref|ZP_04660984.1| preprotein translocase subunit SecF [Acinetobacter baumannii AB900]
          Length = 321

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 4/310 (1%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M  +   P  ++    D   I FM+        SIL ++ SI  + T GLN G+DF GG
Sbjct: 1   MMTKVTQQPSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +   +   +P + + V   L+     D   Q     K+ LVR+  Q         +   +
Sbjct: 61  VSAELNYAQPANQAEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQDIKVE---DLNNTI 117

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K +      + +   + VG ++  EL  +    V ++ I MLIY+ IRF++  A+GA+ 
Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  DI   +G FALF   F+LT +AAVL +IG+S+ND +VV DR+R+N +      + R
Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +++D ++ ETL R+++TSM   + VL M   GG  +  F++ M  G+ V   SSI+I   
Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 297 FALWRGLNRQ 306


>gi|82775807|ref|YP_402154.1| acridine efflux pump [Shigella dysenteriae Sd197]
 gi|81239955|gb|ABB60665.1| acridine efflux pump [Shigella dysenteriae Sd197]
          Length = 1049

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVATNMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVIYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + I++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVIYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALHESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|262281061|ref|ZP_06058843.1| protein-export membrane protein SecF [Acinetobacter calcoaceticus
           RUH2202]
 gi|262257292|gb|EEY76028.1| protein-export membrane protein SecF [Acinetobacter calcoaceticus
           RUH2202]
          Length = 321

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 99/310 (31%), Positives = 155/310 (50%), Gaps = 4/310 (1%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M  +      ++    D   I FM+        SIL ++ SI  + T GLN G+DF GG
Sbjct: 1   MMTKVTQQDSKQYGRPDDAKIIPFMKIAKPAAIFSILITLASIFFIATKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +   +   +P + S V   L+     D   Q     K+ LVR+  Q         +   +
Sbjct: 61  VSAELNYAQPANQSEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQEVKVE---DLTNTI 117

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K +      + +   + VG ++  EL  +    V ++ I MLIY+ IRF++  A+GA+ 
Sbjct: 118 TKAVQLSNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  DI   +G FALF   F+LT +AAVL +IG+S+ND +VV DR+R+N +      + R
Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           ++ID ++ ETL R+++TSM   + VL M   GG  +  FA+ M  G+ V   SSI+I   
Sbjct: 237 EIIDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFAVAMFVGVFVGTYSSIYIGTA 296

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 297 FALWRGLNRQ 306


>gi|168239423|ref|ZP_02664481.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194736548|ref|YP_002116340.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204931225|ref|ZP_03222019.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|194712050|gb|ACF91271.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197287904|gb|EDY27292.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204319992|gb|EDZ05198.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|322614532|gb|EFY11462.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315996572]
 gi|322618246|gb|EFY15137.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-1]
 gi|322625959|gb|EFY22773.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-3]
 gi|322626729|gb|EFY23526.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 495297-4]
 gi|322631297|gb|EFY28057.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-1]
 gi|322635436|gb|EFY32150.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 515920-2]
 gi|322643436|gb|EFY40000.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 531954]
 gi|322647260|gb|EFY43758.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. NC_MB110209-0054]
 gi|322649724|gb|EFY46151.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. OH_2009072675]
 gi|322655602|gb|EFY51908.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. CASC_09SCPH15965]
 gi|322658368|gb|EFY54633.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 19N]
 gi|322664990|gb|EFY61180.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 81038-01]
 gi|322667372|gb|EFY63534.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. MD_MDA09249507]
 gi|322674620|gb|EFY70712.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 414877]
 gi|322675749|gb|EFY71822.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 366867]
 gi|322682385|gb|EFY78408.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 413180]
 gi|322684750|gb|EFY80751.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 446600]
 gi|323193242|gb|EFZ78458.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609458-1]
 gi|323196738|gb|EFZ81883.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556150-1]
 gi|323205063|gb|EFZ90045.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 609460]
 gi|323207723|gb|EFZ92670.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 507440-20]
 gi|323209987|gb|EFZ94892.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 556152]
 gi|323214298|gb|EFZ99051.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB101509-0077]
 gi|323219025|gb|EGA03531.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB102109-0047]
 gi|323225157|gb|EGA09405.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB110209-0055]
 gi|323230405|gb|EGA14524.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. MB111609-0052]
 gi|323233381|gb|EGA17475.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009083312]
 gi|323239418|gb|EGA23468.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 2009085258]
 gi|323242331|gb|EGA26357.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. 315731156]
 gi|323247315|gb|EGA31280.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2009159199]
 gi|323250405|gb|EGA34289.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008282]
 gi|323256853|gb|EGA40568.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008283]
 gi|323263863|gb|EGA47382.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008284]
 gi|323264116|gb|EGA47624.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008285]
 gi|323271625|gb|EGA55044.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Montevideo str. IA_2010008287]
          Length = 1037

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/684 (10%), Positives = 186/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPQEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T        A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++  S   + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F+IT+  ++ +S+  A+ +  A+   +          KK          
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518

Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +           R    + +   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 95/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +            G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T   ++    ++    P               +  I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++S R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|167552896|ref|ZP_02346647.1| AcrB protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205322548|gb|EDZ10387.1| AcrB protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
          Length = 1037

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/684 (10%), Positives = 186/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T        A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++  S   + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F+IT+  ++ +S+  A+ +  A+   +          KK          
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTK 518

Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +           R    + +   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T   ++    ++    P               +  I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++S R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|50083823|ref|YP_045333.1| preprotein translocase subunit SecF [Acinetobacter sp. ADP1]
 gi|49529799|emb|CAG67511.1| preprotein translocase, IISP family, membrane subunit
           [Acinetobacter sp. ADP1]
          Length = 322

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 95/310 (30%), Positives = 160/310 (51%), Gaps = 3/310 (0%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M  +      ++    +   I FM+        S+L ++ SI  + T GLN G+DF GG
Sbjct: 1   MMTDMTQPKPKQYGRPDNERVIPFMKIAKPAAIFSVLLTLASIFFIVTKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +   +  ++PV+ S V   L+     D   Q     K+ +VR+  Q  D +    +   +
Sbjct: 61  VSAELNYSQPVNQSAVSQALDKAGFKDAVVQTLGSNKDLIVRMPVQ--DDLKVDDLSNAL 118

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K +      + +   + VG ++  EL  +    V ++ I ML+Y+ IRF++  A+GA+ 
Sbjct: 119 TKAVQLPNNTAVVHKVDAVGGQVGNELYIRSAGAVALALILMLVYVTIRFEFKLAMGAVM 178

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  DI   +G FALF  +F+LT +AAVL +IG+S+ND +VV DR+R+N +      + R
Sbjct: 179 SLFHDIIIIIGAFALFQWQFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 237

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +++D ++ ETL R+++TSM   + VL M   GG  +  F++ M  G+ V   SSI+I   
Sbjct: 238 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLKWFSVAMFVGVFVGTYSSIYIGTA 297

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 298 FALWRGLNRQ 307


>gi|261491627|ref|ZP_05988210.1| preprotein translocase subunit SecD [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261312753|gb|EEY13873.1| preprotein translocase subunit SecD [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 613

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 165/523 (31%), Positives = 282/523 (53%), Gaps = 40/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + +  GLDL GG   ++EVD +  +        D LRS  +KE +
Sbjct: 104 NLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKL 163

Query: 87  GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N  T + FAD+   E     V                  L +   + ++++
Sbjct: 164 QYQAVKKGENFATEVEFADNDTAEKAVRLVRR------------SHPTLDILVNDNKVTL 211

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S   + +  + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 212 TPSAQALSESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 271

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    +      G+           DG   ++  K  + G H+  AT+ 
Sbjct: 272 LGATATLEFRLVNTEANVASAAKGIVPADSELQNTRDGEPVVLRRKPSLGGEHIIDATSG 331

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD------------------GRV 302
            D +     V I  D  G     E+T+  I KP+A +                     + 
Sbjct: 332 TDERGLPQ-VSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q     + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 391 VINVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A + GL L +LF +  Y  +G+ A  ++ +N+ILT+ L+SL+GATLT+P IAGIVL
Sbjct: 451 QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  + +  ++  G++ A+S+IFDSN+T ++ ++VL+  G 
Sbjct: 511 AVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFA+T+ L ++ISMFTAI+  R ++ ++   K++K + I
Sbjct: 571 GPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI 613



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + +++G+   I+     +++    +K  F + A   LI+++  T+G  +L G
Sbjct: 439 TIGASLGADNVKQGMEASILGLGLTILFCLAFYKV-FGIFASLALIVNMILTIGLMSLIG 497

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++        +  I +  N        +
Sbjct: 498 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEEIR---NGRPIQQAIHEGYNGAFSSIFDS 554

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   ++ L +   G   +  FA+ +A G++++  ++I     ++ ++Y  +    
Sbjct: 555 NLTTILTSLVLYGVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKK 610


>gi|110833825|ref|YP_692684.1| AcrB/AcrD/AcrFa family protein [Alcanivorax borkumensis SK2]
 gi|110646936|emb|CAL16412.1| AcrB/AcrD/AcrFa family protein [Alcanivorax borkumensis SK2]
          Length = 1041

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 71/689 (10%), Positives = 187/689 (27%), Gaps = 50/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L           ++++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIMMMAGALAI-----YTLPIEQYPTVAPP-------------QVSIAGNY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       + L+FA     +    +V  
Sbjct: 50  PGASAKTVEDSVTQVIEQQMNGIDNLLYMSSSSDSFGNAAVNLTFAPGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +  T   +  ++++    +       + +  +     D +   
Sbjct: 110 KLQLATPLLPQEVQQQGMQVTKSSDSFLMVAGFTSEDGSLSRADLADYVASNVQDPVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L +   T   ++    + NN       G     +  
Sbjct: 170 PGVGQIQLFGSP-YAMRVWLDPNKLNKFDLTPQDVTQTIEVQNNQVASGQLGGAPAVEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +  +              +    +        R F      +       
Sbjct: 229 QLNATIIAQTRLEDVD-------------QFENILLKVNPDGSRVFLKDVARVELAAQNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           S     +   T E      A L+         +           
Sbjct: 276 DVQGRYNGQPAAGLAISLATGANALDTAEALRARLAELQPYFPDKMEMVFPYDTTPFVSI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIEEVVHTLFEAIILVFLVMYLFLQNFRATLIPTLAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMHEEGLPPKEATRKSMGQITGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           + FF G      R F+IT+  ++++S+  A+ +  A+   +           +      +
Sbjct: 456 MAFFPGSTGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKAKDSEHQTDHGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        +     R   +     ++  +     +         + +G +   V 
Sbjct: 516 RTFDKSSRRYQGSVEKILGRRGRYLFIYVVIVGVLGFSFMRLPSSFLPEEDQGILFTLVT 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                        LE ++   ++ +    +  F V      G           +K     
Sbjct: 576 LPAGSTQEQTVKVLEKMEDYYLNEEASAVDGLFTVAGFSFTGRGQNAGMAFVNLKDWSER 635

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            + +    N           +    +  +
Sbjct: 636 DLSVDGADNVVARAMGYFSTIREAMMFAL 664



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 83/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V     + Q  D+  +        L        +++     L     ++    
Sbjct: 258 SRVFLKDVARVELAAQNYDVQGRYNGQPAAGLAISLATGANALDTAEALRARLAELQPYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I + +  +  + I + + +++  + +   L     + + + 
Sbjct: 318 PDKMEMVFPYDTTPFVSISIEEVVHTLFEAIILVFLVMYLFLQNFRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     ++   +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMHEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +PMA + GS       F+I +   +V++   ++ +   +
Sbjct: 436 GQITGALVGIALVLSAVFVPMAFFPGSTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 72/248 (29%), Gaps = 13/248 (5%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N+   +            G    + ++G  +  ++    PG S              
Sbjct: 788  VRNNQGKMVPFSTFATGHWTYGSPKLERYNGVSSVNIQGNAAPGYSTGDAMDAMEELSAK 847

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                             +   +     ++ +++  + +     +   W         L++
Sbjct: 848  LPAGFGFEWTGMSYQERQSGDQAPALYVISLLVVFLCLA---ALYESWSIPFA--VMLVV 902

Query: 703  DITKTLGFFALFGIEFNLTAVA--AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A    + N        +LT IG S  + +++ +   +   L          
Sbjct: 903  PLGILGAVLAATFRDLNNDVFFQVGLLTTIGLSAKNAILIAEFALE---LEQKGEHLLKA 959

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
              +++   L   + TS+A  + V P+ +    G     +    +  G++ A   +IF   
Sbjct: 960  TLEAVRMRLRPILMTSLAFMLGVTPLMISTGAGAGARNAIGTGVFGGMLTATVLAIFFIP 1019

Query: 818  PILLFIYD 825
               + +  
Sbjct: 1020 LFYVAVRK 1027


>gi|168261485|ref|ZP_02683458.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205349333|gb|EDZ35964.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 1037

 Score =  202 bits (512), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQTTITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|195939714|ref|ZP_03085096.1| putative multidrug-efflux transport protein [Escherichia coli
           O157:H7 str. EC4024]
 gi|254792882|ref|YP_003077719.1| putative efflux pump [Escherichia coli O157:H7 str. TW14359]
 gi|261224277|ref|ZP_05938558.1| putative efflux pump [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257467|ref|ZP_05950000.1| putative efflux pump [Escherichia coli O157:H7 str. FRIK966]
 gi|254592282|gb|ACT71643.1| putative efflux pump [Escherichia coli O157:H7 str. TW14359]
 gi|320637189|gb|EFX07015.1| putative efflux pump [Escherichia coli O157:H7 str. G5101]
 gi|320642556|gb|EFX11804.1| putative efflux pump [Escherichia coli O157:H- str. 493-89]
 gi|320647909|gb|EFX16617.1| putative efflux pump [Escherichia coli O157:H- str. H 2687]
 gi|320664003|gb|EFX31190.1| putative efflux pump [Escherichia coli O157:H7 str. LSU-61]
          Length = 1029

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +  +          +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +      K      + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDKGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFDRFYRRT 519

Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592
               Q       R     + +   +     L    L           ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDKGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489


>gi|168232027|ref|ZP_02657085.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471270|ref|ZP_03077254.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194457634|gb|EDX46473.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205333669|gb|EDZ20433.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 1037

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFKVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|213970267|ref|ZP_03398397.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato T1]
 gi|301382925|ref|ZP_07231343.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302133534|ref|ZP_07259524.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213924939|gb|EEB58504.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato T1]
          Length = 1044

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 182/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------AIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVRDAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLRDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S   
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLLGTFGILAGFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    K+        F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      I+     I +       +  D   G+    +   
Sbjct: 520 FDRSVVSYERGVGNMLKHKWLSYLGYIVIFAGMIFMFMRIPAAFLPDEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  ++
Sbjct: 640 ENSVFKLAERAQGYFFSLRDAMVFAIV 666



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLRDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I+  +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESIKGVVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAGFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V  S   S   +     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSAGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEILGTPAPGYSSGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLTDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + I        +
Sbjct: 1009 ITAVVLAIFWVPLFFVSISGLFKSKQK 1035


>gi|56412637|ref|YP_149712.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361572|ref|YP_002141208.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126894|gb|AAV76400.1| putative efflux pump [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197093048|emb|CAR58486.1| putative efflux pump [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
          Length = 1037

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MTFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PM  +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMTFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPM      
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMTTSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|197363290|ref|YP_002142927.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197094767|emb|CAR60300.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 1049

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/686 (9%), Positives = 175/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIF-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L +   T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        I           
Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +     P    +           S   
Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + +   I+    +   +         + +G     V   
Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++           ++    +  
Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|309388957|gb|ADO76837.1| protein translocase subunit secF [Halanaerobium praevalens DSM
           2228]
          Length = 286

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 91/287 (31%), Positives = 157/287 (54%), Gaps = 6/287 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R     +S+   +  +  L  +GLN GIDF GG  +       +    VR  L+S+ I
Sbjct: 5   GKRKIWYILSLTIIVIGLGFLLINGLNLGIDFNGGTLMEFSFKEDIGTEAVRDVLQSIDI 64

Query: 604 G-DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             D   Q+ +G     + ++    +S     + + +  +         +  TE+VGP I 
Sbjct: 65  AADSKLQHSEGSGENGIIIRASSLESEEIIAIDDAIHSEFESAE----MLRTEMVGPTIG 120

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           REL    ++ +I+++IA++ YI  RF++ FA  +I TL+ DI  T+G FA+ G E N   
Sbjct: 121 RELRINALLAMIVASIAIVAYISFRFEFRFAAVSIITLMHDILITIGIFAMLGREVNTAF 180

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           VAA+LT++GYS+ND +V++DR+R+NMKL      F +  + ++ +TL RS+ TS+   I+
Sbjct: 181 VAALLTIVGYSINDTIVIFDRIRENMKLM-HKAPFIEQANTAVVDTLPRSINTSITTLIT 239

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +L +  +GG+ I +F + +  G+     SSIF+A+P+L+   +  +K
Sbjct: 240 ILAIYFFGGASIQTFMLALFIGMFAGTYSSIFVASPLLVTWEEKISK 286


>gi|62181898|ref|YP_218315.1| multidrug transporter acriflavin resistance protein F [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62129531|gb|AAX67234.1| RND family, multidrug transport protein, acriflavin resistance
           protein F [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
          Length = 1037

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/684 (10%), Positives = 186/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T        A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++  S   + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F+IT+  ++ +S+  A+ +  A+   +          KK          
Sbjct: 459 FGGSTRAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518

Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +           R    + +   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T   ++    ++    P               +  I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GS 796
           V + +     +   ++S R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTRAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQEPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|310829084|ref|YP_003961441.1| hypothetical protein ELI_3519 [Eubacterium limosum KIST612]
 gi|308740818|gb|ADO38478.1| hypothetical protein ELI_3519 [Eubacterium limosum KIST612]
          Length = 314

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 143/282 (50%), Gaps = 4/282 (1%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  I+I+  + S+  L   GLN+GIDF GG  + +  +   +    R  +      
Sbjct: 9   KSKIWFSIAIVLVLISVGSLLIRGLNFGIDFVGGTIVTIDLHTQFNTDDARQ-ITDQYDK 67

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                     ++ +V    +  D+  +  +    K K +       + + + V   +  E
Sbjct: 68  SAEITYAGDGQDRIVISTKESLDTDQRKELFNQFKDKYSLQDSD--LVSVDTVTATVGSE 125

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
             R  +V   I+ + MLIYI  RF++YF L AI  L+ DIT  +G +ALF I+ N   +A
Sbjct: 126 TARNAVVASAIAVLLMLIYITFRFEFYFGLSAIIALLYDITIVIGVYALFQIQVNAPFIA 185

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +VV+DR+R+N           +L++ S+++TL RS+ T +   +++L
Sbjct: 186 AILTILGYSINDTIVVFDRIRENETRIGMR-DINELVNVSVSQTLKRSINTVVTTLLAIL 244

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + ++G   I SFA+P+  GIV    SSIF+A+P+ +     
Sbjct: 245 ALYIFGVEAIRSFALPLIVGIVSGCYSSIFVASPLWVQFQKR 286


>gi|188534662|ref|YP_001908459.1| preprotein translocase subunit SecD [Erwinia tasmaniensis Et1/99]
 gi|188029704|emb|CAO97583.1| Protein-export membrane protein [Erwinia tasmaniensis Et1/99]
          Length = 615

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 158/518 (30%), Positives = 280/518 (54%), Gaps = 37/518 (7%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + + +    + LGLDLRGG H ++EVD D  +        D LRS L+++ I   ++R
Sbjct: 110 PAWLAMLSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYINVR 169

Query: 93  QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +  N  + + F D + ++     +T   +             ++ ++    ++ V+S   
Sbjct: 170 KTANYGLEIRFRDDKARDAAISYLTTRHR-----------DMVINSSGSNALTAVMSDER 218

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++LG TA 
Sbjct: 219 MREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATAT 278

Query: 212 MSFHKVLPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  +        G            +G   ++  +V ++G H+  +T++ D    
Sbjct: 279 LEFRLVNTSVDATSAANGRIPGDSEVKDTREGQPVVLYKRVILTGDHITDSTSSTDEYN- 337

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
           +P V+IS D  G       T+D++GK +A +      +                      
Sbjct: 338 QPQVNISLDSAGGNIMSNFTKDSVGKAMATLFVEYKDSGKKDANGRAILEKHEEVINVAN 397

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  +G+ +I +G  A 
Sbjct: 398 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEAC 457

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GL+  ++FM+V Y K+GLVA  ++  N++L + ++SLL  ATLT+P IAGIVL + +A
Sbjct: 458 LWGLIASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA 517

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  ++L+  G G+++G
Sbjct: 518 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 577

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 578 FAITTAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI 615



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 96/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++        N    ++ L       G +         +  +   
Sbjct: 369 FVEYKDSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 428

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++ + +K  F L A + L+ ++
Sbjct: 429 LIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK-KFGLVATSALLANL 487

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +
Sbjct: 488 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    V  ++   I V+ +   G   I  FAI  A G+  +  ++I     I+  +
Sbjct: 545 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLM 604

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 605 YGGKRINK 612


>gi|56415317|ref|YP_152392.1| multidrug transporter acriflavin resistance protein F [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161616419|ref|YP_001590384.1| hypothetical protein SPAB_04228 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168233981|ref|ZP_02659039.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168245203|ref|ZP_02670135.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|168262581|ref|ZP_02684554.1| AcrB protein [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|168463368|ref|ZP_02697285.1| AcrB protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|168822705|ref|ZP_02834705.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|194451916|ref|YP_002047420.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194469230|ref|ZP_03075214.1| AcrB protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197249559|ref|YP_002148316.1| AcrB protein [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|197364247|ref|YP_002143884.1| acriflavin resistance protein F [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|224585189|ref|YP_002638988.1| RND family, multidrug transport protein, acriflavin resistance
           protein F [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|238913529|ref|ZP_04657366.1| RND family, multidrug transport protein, acriflavin resistance
           protein F [Salmonella enterica subsp. enterica serovar
           Tennessee str. CDC07-0191]
 gi|56129574|gb|AAV79080.1| RND family, multidrug transport protein, acriflavin resistance
           protein F [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|161365783|gb|ABX69551.1| hypothetical protein SPAB_04228 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194410220|gb|ACF70439.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Heidelberg str. SL476]
 gi|194455594|gb|EDX44433.1| AcrB protein [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|195633204|gb|EDX51618.1| AcrB protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197095724|emb|CAR61294.1| RND family, multidrug transport protein,acriflavin resistance
           protein F [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197213262|gb|ACH50659.1| AcrB protein [Salmonella enterica subsp. enterica serovar Agona
           str. SL483]
 gi|205332025|gb|EDZ18789.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|205336023|gb|EDZ22787.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|205340927|gb|EDZ27691.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           Weltevreden str. HI_N05-537]
 gi|205348406|gb|EDZ35037.1| AcrB protein [Salmonella enterica subsp. enterica serovar Hadar
           str. RI_05P066]
 gi|224469717|gb|ACN47547.1| RND family, multidrug transport protein, acriflavin resistance
           protein F [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|320087840|emb|CBY97604.1| Multidrug resistance protein mdtF [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 1037

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/684 (10%), Positives = 186/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T        A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++  S   + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F+IT+  ++ +S+  A+ +  A+   +          KK          
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518

Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +           R    + +   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T   ++    ++    P               +  I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++S R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|320353437|ref|YP_004194776.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Desulfobulbus propionicus DSM 2032]
 gi|320121939|gb|ADW17485.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfobulbus propionicus DSM 2032]
          Length = 1048

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 72/689 (10%), Positives = 181/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P   P               + +    
Sbjct: 8   RPIFAWVIAIVIMLAGALSIM-----RLPISQYPEIAPP-------------SVQITSKY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S    Q  ITL+F      +    +V  
Sbjct: 50  PGASAKTIEDSVTQIIEQNMNGLDNLLYMNSQSSSTGQVTITLTFEAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L  + +   +  T      +++     +       + S  ++    D +  +
Sbjct: 110 KLQQALSLLPEEVQDEGVQVTKSNSTFLMIVGLISEDGSMDKNDLSDFMVSTLRDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +       NN       G        
Sbjct: 170 RGVGSIRIFGSQ-YAMRIWLDPHKLNSYQLTPVDIKAAIQAQNNQVAVGDLGGTPSTAGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                            +           +    +        +        +       
Sbjct: 229 QVNA-------------SMMAQTKMSSPEQFAQILLKVNSDGSQIRLRDVARVEIGGETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T +      A L+         +           
Sbjct: 276 DSLTTFNGMPASGMAIMLATGANALDTAKAVRDKLADLQPYFPAGVSVVYPYDTTTFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +++  G ++   ++
Sbjct: 336 SIEEVAHTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERIMAEEGLSPLEATRKSMDQITGALIGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCATLLKPVKKGHHEQKRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + +A    R   +G+   +L    +             + +G     V
Sbjct: 516 NRTFERSADGYRNSVAYVLKRTGRFGLIYLLLIGGMAFLFTKLPTSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      ++ L  ++   +  +  + +  F V      G       V   ++    
Sbjct: 576 QLPTGATQERTQAILNQVRDHYLVKEKENVKSAFTVAGFSFAGTGQNMGMVFAQLRDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              P  ++            ++    +  
Sbjct: 636 RKRPEQSVSGVIQRAMGTFMQIKEAQVFA 664



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  D          + +  +     +++   + +      +    P     
Sbjct: 264 DVARVEIGGETYDSLTTFNGMPASGMAIMLATGANALDTAKAVRDKLADLQPYFPAGVSV 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I +    ++ + I + + +++  + +   L     + + +  T G  
Sbjct: 324 VYPYDTTTFIKISIEEVAHTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +S  +   KS+++  G 
Sbjct: 384 AAFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ERIMAEEGLSPLEATRKSMDQITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++      +PMA +GGS       F++ +   +V++   ++ +   +   +     
Sbjct: 442 LIGIALVLSAVFVPMAFFGGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCATLLKPVK 501

Query: 829 K 829
           K
Sbjct: 502 K 502



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 51/444 (11%), Positives = 120/444 (27%), Gaps = 24/444 (5%)

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L+     + S   +          N+ +      +  + +    S+     RA  T   
Sbjct: 597  YLVKEKENVKSAFTVAGFSFAGTGQNMGMVFAQLRDWSERKRPEQSVSGVIQRAMGTFMQ 656

Query: 466  SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
                 + A  +      G   GF   +     +     I     ++    +   +  +  
Sbjct: 657  IKEAQVFAFNLPSIPALGTSTGFDFFLQDRAGLGHEKLIEARNMLLGLAAKNPNLTRVRP 716

Query: 526  NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG------------- 572
            N +         I  +   A    V         +    + +   +              
Sbjct: 717  NGMEDTPQYNVDIDFEKAMALGVTVSDINTTLSTAWGSSYVNDFVHQGRVKKVYVQADAP 776

Query: 573  --IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
              +  +      V       +     +      G    + F+G     +  +  PG S  
Sbjct: 777  YRMQPEDLDHWYVRNANGEMVPFSTFSSGHWSFGSPRLERFNGNSAVEIVGEAAPGKSSG 836

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
                L                        +   +      + +++  + +     +   W
Sbjct: 837  DAMTLIGDLVAQLPAGIGYEWTGASFQEQQAGAQAPALYAISILVVFLCLA---ALYESW 893

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                  I  + L +   L      G+E ++     +LT IG S  + +++ +  +   + 
Sbjct: 894  SVPFSVILAVPLGVLGALSAAYFRGMENDVYFQVGLLTTIGLSAKNAILIVEFAK---RR 950

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
            Y       +   K+    L   + TS+A  + VLP+A+    G +   +    +  G++ 
Sbjct: 951  YDKGRDLVEATVKACRLRLRPILMTSLAFMLGVLPLAISSGAGANSRHAIGTGVLGGMLS 1010

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A   +IF      + +     K  
Sbjct: 1011 ATVLAIFFIPLFFVVVLRLFTKKR 1034


>gi|300715617|ref|YP_003740420.1| Acriflavine resistance protein B [Erwinia billingiae Eb661]
 gi|299061453|emb|CAX58567.1| Acriflavine resistance protein B [Erwinia billingiae Eb661]
          Length = 1050

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 63/570 (11%), Positives = 157/570 (27%), Gaps = 38/570 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L  L     +  ++++P+  P                V    +
Sbjct: 8   RPIFAWVIAIIIMLMGVLSIL-----KLPIEQYPNVAPPAVQ---------IRAVYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        +       ++TL+F      +    +V   LQ 
Sbjct: 54  AKTLQDSVTQVIEQNMNGIDGLMYMSSNSDSSGTLQLTLTFQSGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++         +  + S  +     D I  +    
Sbjct: 114 ATPLLPQEVQQQGIQVQKSSSSFLMVAGFVSKDGSMNQNDISDYVASNIKDPISRTLGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   +       N+       G            
Sbjct: 174 DTQIFGAQ-YAMRIWMDPHKLNNYQLTPVDVISAIDSQNSQVAAGQLGGSPPVPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        R        I           
Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNADGSRVLLKDVARIELGGENYEIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          L          +           S   
Sbjct: 280 RYNGKPASGIGIKLATGANALDTAAAVKDELKKLEPFFPSGMETVYPYDTTPFVKISIIE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+++ +   +  L+   ++ + ++ T A++S  G ++   ++ G+V
Sbjct: 340 VVKTLIEAIVLVFIVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEGLPPKEATKKSMEQIQGALVGIALVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++++S+  A+ +  A+         +K +      +       
Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVIVALVLTPALCAT-----MLKPVKKGDHGKTTGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
               F ++              +   L  +
Sbjct: 515 FNRMFDKSTNHYTNSVGHIIRSTGRYLVIY 544



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 86/242 (35%), Gaps = 7/242 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L       I+  N        ++L            V + +KK           
Sbjct: 264 DVARIELGGENYEIIARYNGKPASGIGIKLATGANALDTAAAVKDELKKLEPFFPSGMET 323

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
                  P +   +I   +  +I + + + I +++  + +   L     + + +  T   
Sbjct: 324 VYPYDTTPFVKISIIE-VVKTLIEAIVLVFIVMYLFLQNFRATLIPTIAVPVVLLGTFAI 382

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G
Sbjct: 383 ISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATKKSMEQIQG 440

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V  ++      +PMA +GGS       F+I +   +V++   ++ +   +   +    
Sbjct: 441 ALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALVLTPALCATMLKPV 500

Query: 828 AK 829
            K
Sbjct: 501 KK 502



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 68/183 (37%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMGLMEQIASQLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L F  + G+  ++  V  +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVIGALIFTTVRGLSNDVYFVVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + VLP+ +    G     +    +  G+V A  
Sbjct: 958  G--LVESTLEAVRMRLRPILMTSLAFILGVLPLTISTGAGSGAQNAVGTGVMGGMVTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 FAI 1018


>gi|156934958|ref|YP_001438874.1| hypothetical protein ESA_02808 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533212|gb|ABU78038.1| hypothetical protein ESA_02808 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1049

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/686 (9%), Positives = 174/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++PS  P              +      +
Sbjct: 8   RPIFAWVIAIIIMLAGGLSIM-----KLPVAQYPSIAPPAVT---------INATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDGLMYMSSTSDSSGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + +        D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVLGLINTDGSMKQEDIADYAGANIKDPISRTTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWLDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        R        +           
Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSRVLLRDVAKVELGGENYDIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T E      A L          +           S   
Sbjct: 280 RYNGQPAAGLGIKLATGANALDTAEAVRKTIAGLEPFFPSGLKVVYPYDTTPFVKISIFE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIALVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++++S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMVLSVIVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + +   ++    +   +         + +G         
Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLLIVVAMAFLFIRLPSSFLPDEDQGVFLTMAQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  +    F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEVTDYYLTQEKDNVNSVFTVNGFGFSGRGQNTGLAFVSLKNWDERPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + +            ++    +  
Sbjct: 640 AENKVPAITGRAMGRFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 81/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +        L        +++     +      +    P     
Sbjct: 264 DVAKVELGGENYDIIARYNGQPAAGLGIKLATGANALDTAEAVRKTIAGLEPFFPSGLKV 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + + + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIFEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  ++      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 442 LVGIALVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMVLSVIVALILTPAL 492



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L T    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEQLASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 899  FSVMLVVPLGVIGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|254361839|ref|ZP_04977974.1| preprotein translocase subunit SecD [Mannheimia haemolytica PHL213]
 gi|153093374|gb|EDN74370.1| preprotein translocase subunit SecD [Mannheimia haemolytica PHL213]
          Length = 613

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 166/523 (31%), Positives = 283/523 (54%), Gaps = 40/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + +  GLDL GG   ++EVD +  +        D LRS  +KE +
Sbjct: 104 NLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKL 163

Query: 87  GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N  T + FAD+   E     V L                L +   + ++++
Sbjct: 164 QYQAVKKGENFATEVEFADNDTAEKAVRLVRL------------SHPTLDILVNDNKVTL 211

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S   + +  + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 212 TPSAQALSESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 271

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    +      G+           DG   ++  K  + G H+  AT+ 
Sbjct: 272 LGATATLEFRLVNTEANVASAAKGIVPADSGLQNTRDGEPVVLRRKPSLGGEHIIDATSG 331

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD------------------GRV 302
            D +     V I  D  G     E+T+  I KP+A +                     + 
Sbjct: 332 TDERGLPQ-VSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q     + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 391 VINVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A + GL L +LF +  Y  +G+ A  ++ +N+ILT+ L+SL+GATLT+P IAGIVL
Sbjct: 451 QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  + +  ++  G++ A+S+IFDSN+T ++ ++VL+  G 
Sbjct: 511 AVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFA+T+ L ++ISMFTAI+  R ++ ++   K++K + I
Sbjct: 571 GPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI 613



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + +++G+   I+     +++    +K  F + A   LI+++  T+G  +L G
Sbjct: 439 TIGASLGADNVKQGMEASILGLGLTILFCLAFYKV-FGIFASLALIVNMILTIGLMSLIG 497

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++        +  I +  N        +
Sbjct: 498 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEEIR---NGRPIQQAIHEGYNGAFSSIFDS 554

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   ++ L +   G   +  FA+ +A G++++  ++I     ++ ++Y  +    
Sbjct: 555 NLTTILTSLVLYGVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKK 610


>gi|301025629|ref|ZP_07189151.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 196-1]
 gi|299880035|gb|EFI88246.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 196-1]
          Length = 1049

 Score =  202 bits (512), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGPPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|326341045|gb|EGD64838.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. 1125]
          Length = 1029

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +  +          +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +      K      + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDKGLPAREATEKSMGEISGALVAIVLVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFDRFYRRT 519

Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592
               Q       R     + +   +     L    L           ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 85/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDKGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V   +      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIVLVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489


>gi|78485674|ref|YP_391599.1| SecF protein [Thiomicrospira crunogena XCL-2]
 gi|78363960|gb|ABB41925.1| protein translocase subunit secF [Thiomicrospira crunogena XCL-2]
          Length = 338

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 168/299 (56%), Gaps = 2/299 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               + +     FM  R   + +S+ F + SI  LF  GLN+GIDF GG  + +  ++P 
Sbjct: 1   MSTSMENQKEYNFMGHRKLAMSVSLFFIVASIIGLFVKGLNFGIDFTGGTIVELSYDKPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++  +R++L+         QNF   ++ L+R+  + G + AQ    ++++          
Sbjct: 61  EVDTIRTSLQDSGFERAVVQNFGSAEDVLIRIAPKEGVNSAQIS-NQVMEALRENHSEDF 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP++  EL   G + VI + I +LIY+ +RF++ F++G++  L+ D+  TLG
Sbjct: 120 ELRRVEFVGPQVGDELTEDGALAVIYALIGVLIYVALRFEFRFSIGSVAALVHDVVITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F+    +F+LT +AA+L +IGYS+ND +VV+DR+R+N +      S   + + ++N+ L
Sbjct: 180 VFSWTQAQFDLTVLAAILAVIGYSLNDTIVVFDRVRENFRTVRDG-SPETVTNLAVNQML 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS+   + ++ + V GG +I +FA+ +  G+VV   SS F+A+ I L +   + 
Sbjct: 239 ARTLMTSLTTLLVLVALFVLGGEIIHNFALALIVGVVVGTYSSTFVASSIALALGVSKE 297


>gi|953226|gb|AAA74741.1| 1037 amino acids, 113 kDa protein [Escherichia coli]
          Length = 1037

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYDFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYDFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|168179556|ref|ZP_02614220.1| protein-export membrane protein SecF [Clostridium botulinum NCTC
           2916]
 gi|226950491|ref|YP_002805582.1| preprotein translocase subunit SecF [Clostridium botulinum A2 str.
           Kyoto]
 gi|182669763|gb|EDT81739.1| protein-export membrane protein SecF [Clostridium botulinum NCTC
           2916]
 gi|226841817|gb|ACO84483.1| protein-export membrane protein SecF [Clostridium botulinum A2 str.
           Kyoto]
          Length = 287

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 148/287 (51%), Gaps = 8/287 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS++  +  +  L   GLNYGIDFKGG  + +   +      V   ++     
Sbjct: 7   KTKIWFSISLIIILTGMFFLIKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ +      N  + ++          ++   VK K         + + + +GP + +E
Sbjct: 67  SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L RK ++ +II+ IAMLIY+ IRF++ FAL AI  L+ DI  T+  +A+F +  + + +A
Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFNFALAAILGLVHDILITVSIYAIFKLPVSSSFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           AVLT++GYS+ND +V++DR+R+N K         ++ + SI +T+ RS+ T +    +++
Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANTSITQTMSRSINTVLTTLFTIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + V+    I  FA P+  GI+    SSIFI++P+ +     +  N 
Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTQLGNK 285


>gi|161502368|ref|YP_001569480.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863715|gb|ABX20338.1| hypothetical protein SARI_00401 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1037

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIASQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVQLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DHLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLRKGEQHGQTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKSVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    I  
Sbjct: 636 RDPTTGTSFAIIERATKAFSQIKEARIFA 664



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 89/245 (36%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VQLGDVATVEMGAEKYDHLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLRK 502



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     S  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHSLLDATLHASRQRLRPILMTSLAFIFGVLPMATSNGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|330877821|gb|EGH11970.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 1044

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 182/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------AIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKTAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S   
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLLGTFGILAGFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    K+        F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDEKTHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      I+     I +       +  D   G+    +   
Sbjct: 520 FDRSVVSYERGVGNMLKHKWLSYLGYIVIFAGMIFMFMRIPAAFLPDEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTERTQEVIDNMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
            +++             L    +  ++
Sbjct: 640 ENSVFKLAARAQGYFFSLRDAMVFAIV 666



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I+  +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESIKGVVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAGFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V  S   S   +     +S  N    +  L           
Sbjct: 778  RMTPEDLKKWYVRNSAGEMVPFSAFASGKWTYGSPKLSRYNGVAAEEILGTPAPGYSSGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + KK    I    T  + E              +  +  S + + + +   ++
Sbjct: 838  AMAEVEALAKKLPQGIGISWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 892  SWSIPIAVILVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  D   ++    L   + TSMA  + V+P+A+    G     S    +  G+
Sbjct: 950  -LHEQGKSLTDAAIEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + I        +
Sbjct: 1009 ITAVVLAIFWVPLFFVSISGLFKSKQK 1035


>gi|330504947|ref|YP_004381816.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           mendocina NK-01]
 gi|328919233|gb|AEB60064.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           mendocina NK-01]
          Length = 1047

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/695 (10%), Positives = 183/695 (26%), Gaps = 55/695 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  ++++PS  P               + ++V  
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----KLPINQYPSIAPPA-------------VSIQVSY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L        +   S      +I ++F      +    +V  
Sbjct: 50  PGASAQTVQDTVVQVIEQQLNGIDGLRYVSSASNSDGSMEIVVTFEQGVNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +  T   +  +++             + S  I+    D I  +
Sbjct: 110 KLQLATPLLPQEVQQQGIRVTKSVKNFLMVIGVVSKDGSMTREDLSDYIVSNLQDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L     T   +       N       FG       +
Sbjct: 170 KGVGDFQVFGAQ-YAMRIWLDPAKLNSFQLTPVDVRSAIQAQNVQISSGQFGGLPASPGN 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K  +                 +    +   +    +        +       
Sbjct: 229 QLNATIIGKTRL-------------QTPEEFRKILLKVQADGSQVRLGDIAKVELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T +      A L          +           
Sbjct: 276 AINAQFNGLPASGLAIRLATGANALDTAKAVRETIANLEPFFPAGMEVVFPYDTTPVISA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SIEGVVHTLFEAIVLVFLVMFLFLQNLRATIIPTMAVPVVLLGTFGVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMREEGLSPKEATKKSMGQIQGALVGIALVLSAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++ +S+  A+    A+   +           +       
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMSLSVLVALVFTPALCATLLKPIDSDHHEAKRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R   + +   ++ +I +             + +G +   V
Sbjct: 516 NRTFERGSIAYQRGVAGMIKRKAPYLILYLVIVAIMAWMFTRIPTAFLPEEDQGVLFAQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  ++        +   D              +   + +   M    + 
Sbjct: 576 QTPSGSSAERTQVVVDE----MREYLLNDEASTVKSVFTVTGFNFAGRGQSSGMAFIMLK 631

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                   +N      + ++         ++ +  
Sbjct: 632 PWGERPGEENGVAALAQRAQMHFFSFRDAMVFAFA 666



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 84/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  +       +   I+ Q      + L        +++   + +      +    
Sbjct: 258 SQVRLGDIAKVELGGENYAINAQFNGLPASGLAIRLATGANALDTAKAVRETIANLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I   +  +  + + + + +++  +     +     + + + 
Sbjct: 318 PAGMEVVFPYDTTPVISASIEGVVHTLFEAIVLVFLVMFLFLQNLRATIIPTMAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFGVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMREEGLSPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      LPMA +GGS       F+I +   + ++   ++     +   
Sbjct: 436 GQIQGALVGIALVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMSLSVLVALVFTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 8/201 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWYFA 693
            + +         L         G      L     + + +  + +  L    +   W   
Sbjct: 837  DAMAAVEEIASQLPQGVGYSWTGLSYEERLAGSQTLALFVISAIVVFLCLAALYESWSIP 896

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L I   L F  L G+  ++     +LT IG S  + +++ +  +     Y  
Sbjct: 897  FSVMLVVPLGIIGALLFTELRGLSNDVFFKVGLLTTIGLSARNAILIVEFAK---AQYEQ 953

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
             ++F +   ++    L   + TS+A  +  LP+A+    G     +    +  G++ A  
Sbjct: 954  GMTFAEAAIEACRMRLRPIIMTSLAFILGCLPLAIASGAGAGSKHAIGTGVIGGMLSAMV 1013

Query: 811  SSIFIAAPILLFIYDWRAKNA 831
             +IF      + +     K  
Sbjct: 1014 LAIFWIPLFYVVVCSIFEKKR 1034


>gi|146312606|ref|YP_001177680.1| aminoglycoside/multidrug efflux system [Enterobacter sp. 638]
 gi|145319482|gb|ABP61629.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter sp. 638]
          Length = 1037

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 179/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  L        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAIILCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLSFTAGSDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + S  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDSNILTIAFVSTDGSMDKQDISDYVASNIQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L  +  T   ++      N        G     D+ 
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSVQMTATDVTNAIKSQNAQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPQQFRDITLRVNPDGSEVRLGDVAKVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +         +       +  +   T +        L           V          
Sbjct: 276 DNLSRFNGNQASGLGVKLASGANEMATAKLVIDRLDELAPYFPHGLEYKVAFETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPRDATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCSTLLKPLHKGEQHGQKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NRMFNRNAARYEAGVANILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFITSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++ ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGATQQQTLKVVQKVEQYFFTHEKDNIVSVFSTVGSGPGGNGQNVARMFVRLKGWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K    +    +  
Sbjct: 636 RDSKTGSSFAIIERATKAFTRIKEARVFA 664



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 86/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +    + + L        + +A  +++     ++    P 
Sbjct: 260 VRLGDVAKVEMGAEKYDNLSRFNGNQASGLGVKLASGANEMATAKLVIDRLDELAPYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAFETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    +S RD   KS+ +
Sbjct: 380 FAVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPRDATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 83/269 (30%), Gaps = 13/269 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  D      +   A   V  S   ++        +   N       +         
Sbjct: 776  PYRMLPDDINLWYVRNNAGGMVPFSAFATSHWESGSPRLERYNGYSALEIVGEAAPGVST 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++         T  + +              +  +  S + + + +   
Sbjct: 836  GTAMDTMEKLVQQLPAGFGLEWTAMSYQERLSGAQAP----ALYAL--SLLVVFLCLAAL 889

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      +  + L +   L    + G+E ++     +LT+IG S  + +++ +   +
Sbjct: 890  YESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
               + +           +  + L   + TS+A    VLPMA   G+      +    +  
Sbjct: 950  ---MNSKGHDLLSSTLHACRQRLRPILMTSLAFVFGVLPMATSSGAGSSSQHAVGTGVMG 1006

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G++ A   +I+      + +        R
Sbjct: 1007 GMISATVLAIYFVPLFFVLVRRRFPLKER 1035


>gi|294012029|ref|YP_003545489.1| hydrophobic/amphiphilic exporter-1 [Sphingobium japonicum UT26S]
 gi|292675359|dbj|BAI96877.1| hydrophobic/amphiphilic exporter-1 [Sphingobium japonicum UT26S]
          Length = 1057

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/575 (13%), Positives = 152/575 (26%), Gaps = 41/575 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L      L    + +FP   P               + +    
Sbjct: 8   RPIFAWVIAIVIMLAGALA-----LRSLSVAQFPEIAPPA-------------VTVSTSY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                  L+  +   +   LK      +      +     ITL+F           +V  
Sbjct: 50  PGANAQTLESTTTQVIEQQLKGLDHLRYFSSSSDSAGNLTITLTFEQGTDPNIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  L  T      +++     D  I   ++    I     D I   
Sbjct: 110 KLAQATPLLPQEVQQQGLRVTKSTATFLMVMAVYSDDGIHDQLDAGDFIASSLQDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP ++  L  T   +       N        G        
Sbjct: 170 DGVGDTQLFGSQ-YAMRIWLDPYKMANLGITAGDVKSAIRAQNAQVSAGQIGGAPSPRGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +               +      +       
Sbjct: 229 AMNATVTAQSRL-------------KTPEEFRQIRLRSNGNGSVVYLSDVAKVELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T+E        L               N      
Sbjct: 276 SFRSRFNGHPAAGFAIKLAPGANALDTVEGVKSRVKELSKTFPAWVRYDFPVDNSTFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++ +LA+L   G T+   ++
Sbjct: 336 SVEQVIHTLFEAILLVFVVMFLFLQNWRATLIPTIAVPVVLLGSLAILYAAGFTINTLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERIIQEEGLSPREAARKSMDEISGALVGIGLVLSAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+   I+R K    +   PL   F 
Sbjct: 456 MAFFGGSTGVIFRQFSITIVSAMVLSVLIALILTPALCATILRPKGQSHVWTGPLGSRFG 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                  +         G ++              
Sbjct: 516 RFFDWFNRTFDRNVARYGATVEKVERHWGRTMLVY 550



 Score = 81.7 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 87/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +      +                 +++     ++   K++++  P 
Sbjct: 260 VYLSDVAKVELGAENYSFRSRFNGHPAAGFAIKLAPGANALDTVEGVKSRVKELSKTFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +  +      +  + + I  +  + + + + +++  + W   L     + + +  +
Sbjct: 320 WVRYDFPVDNSTFVKLSVEQVIHTLFEAILLVFVVMFLFLQNWRATLIPTIAVPVVLLGS 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L      G   N   +  ++  IG  V+D +VV + +     +    +S R+   KS++E
Sbjct: 380 LAILYAAGFTINTLTLFGMVLAIGLLVDDAIVVVENV--ERIIQEEGLSPREAARKSMDE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V   +      LPMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 438 ISGALVGIGLVLSAVFLPMAFFGGSTGVIFRQFSITIVSAMVLSVLIALILTPAL 492



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 61/214 (28%), Gaps = 6/214 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                   L V  +      +          G    + F+G  +  +     PG S  + 
Sbjct: 785 TTPDSIGVLHVRGSSGAMAPISSFATTEWTRGPAKLERFNGVPSMQIMGAPAPGVSTGEA 844

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                                          +      + ++I  + +     +   W  
Sbjct: 845 MKAMEEIAAKLPAGVGYEWNGISYEEQTSGGQAPALYALSMLIVFLCLA---ALYESWSV 901

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  +  + L +   +    L G+  ++     ++T IG S  + +++ +   + M+   
Sbjct: 902 PIAVMLVVPLGVFGAVLAAMLVGLNNDIYLQVGLITTIGVSAKNAILIVEFAEEKMRE-- 959

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
             +       ++    L   + TS A    VLP+
Sbjct: 960 -GLPPARAALEAGKLRLRPILMTSFAFVFGVLPL 992


>gi|168817768|ref|ZP_02829768.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205344686|gb|EDZ31450.1| acriflavine resistance protein D [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 1037

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGKPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|167993983|ref|ZP_02575076.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328081|gb|EDZ14845.1| AcrB protein [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|267995602|gb|ACY90487.1| multidrug transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|332990249|gb|AEF09232.1| multidrug transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 1037

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/684 (10%), Positives = 187/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSNSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T     +  A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++  S   + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F+IT+  ++ +S+  A+ +  A+   +          KK          
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518

Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +           R    + +   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 97/269 (36%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680
           +   G +   T     VK    +      ++           ++ I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++S R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|329296806|ref|ZP_08254142.1| multidrug efflux system protein AcrB [Plautia stali symbiont]
          Length = 1049

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 65/574 (11%), Positives = 155/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L  +     +  ++++P+  P               + ++   
Sbjct: 8   RPIFAWVLAIIIMLAGALSII-----KLPIEQYPNVAPPA-------------VEIQASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S       +TL+F      +    +V  
Sbjct: 50  PGADAKTLQDSVTQVIEQNMNGIDRLMYMSSSSDSSGTLTLTLTFQSGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++L+    +       + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGIQVKKSSSSFLMLAGFVSEDGSMTQNDISDYVASNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +       N        G        
Sbjct: 170 PGVGDTQVFGAQ-YAMRIWLDPHKLNNYQLTPVDVISALQTQNTQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGNIMLKVNQDGSQVRLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T +        L+         +           
Sbjct: 276 ESIVRYNGKPASGIGVKLATGANALDTADAVKAELTKLKPFFPAGMKTVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++S  G ++   ++
Sbjct: 336 SIFEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+         +K I      +   
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPIKKGEHGKTTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++    V         +   L  +
Sbjct: 511 FFGWFNRLFDKSTNHYVDSVGHIVRSTGRYLLIY 544



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 80/227 (35%), Gaps = 8/227 (3%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            + +   G    L         + A    L  +K      +      +T         E+
Sbjct: 281 YNGKPASGIGVKLATGANALDTADAVKAELTKLKPFFPAGMKTVYPYDTTPFVKISIFEV 340

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           ++     +++  + M +++     +   L     + + +  T    + FG   N   +  
Sbjct: 341 VKTLFEAIVLVFLVMYLFLQ---NFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFG 397

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  IG  V+D +VV + +     +    +  ++   +S+ +  G  V  ++      +P
Sbjct: 398 MVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIP 455

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           MA +GGS       F+I +   + ++   ++ +   +   +     K
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCATMLKPIKK 502



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 69/183 (37%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            + +    +    L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  DAMNLMESLASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L F  L G+  ++  V  +LT IG S  + +++ +  +  M+    
Sbjct: 898  FAVMLVVPLGVIGALLFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + VLP+A+    G     +    +  G+V A +
Sbjct: 958  G--LVESTLEASRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTGVMGGMVTATA 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|238913618|ref|ZP_04657455.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 1037

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVMGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|261248554|emb|CBG26392.1| acriflavin resistance protein F [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
          Length = 1037

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 75/684 (10%), Positives = 187/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     N  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGNVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T     +  A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++  S   + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F+IT+  ++ +S+  A+ +  A+   +          KK          
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518

Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +           R    + +   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 97/269 (36%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680
           +   G +   T     VK    +      ++           ++ I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++S R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|170767931|ref|ZP_02902384.1| acriflavine resistance protein B [Escherichia albertii TW07627]
 gi|170123419|gb|EDS92350.1| acriflavine resistance protein B [Escherichia albertii TW07627]
          Length = 1049

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 70/686 (10%), Positives = 176/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L +   T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMNPNELNKYQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        R        I           
Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T        A +          +           S   
Sbjct: 280 EFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         +     I+    +   +         + +G     V   
Sbjct: 520 FDKSTHHYTDSVGGILRSTGRYLALYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L  +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLNEVTDYYLTKEKKNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++   +   +   ++    +  
Sbjct: 640 DENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAANGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMALMEELASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|89902624|ref|YP_525095.1| preprotein translocase subunit SecF [Rhodoferax ferrireducens T118]
 gi|89347361|gb|ABD71564.1| protein translocase subunit secF [Rhodoferax ferrireducens T118]
          Length = 317

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 168/302 (55%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       +S++  + ++  LF+ GL+  ++F GG  + V   +P D
Sbjct: 1   MEFFKIKRDIPFMRHAIIFNVVSLVTFLAAVFFLFSRGLHLSVEFTGGTLMEVTYTQPAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L++VRS +  L + D+  QNF   ++ L+RL  Q G + AQ  V   V   +      + 
Sbjct: 61  LNLVRSTVAKLGLNDVQVQNFGTARDVLIRLPVQKGVTSAQQSVQ--VMAALKAADASAV 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL   G+  +    + +++Y+ IRF+W FA+ AI   + D+   LGF
Sbjct: 119 MRRTEFVGPQVGDELAADGLKALASVVVGIMLYLSIRFEWKFAVAAIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AAVL ++GYSVN+ VV++DR+R+N + Y   ++   +ID +I  T+ 
Sbjct: 179 FAFFQWEFSLPVLAAVLAVLGYSVNESVVIFDRIRENFRRYRK-MNTMQIIDSAITSTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M ++GG+ +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHGSTQMMVLSMLLFGGATLHYFALALTIGILFGIYSSVFVAAAIAMWLGIQREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|254262186|emb|CAZ90514.1| Probable aminoglycoside efflux pump acrD [Enterobacter turicensis]
          Length = 1038

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 79/689 (11%), Positives = 179/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G +           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLGGSMAIF-----SLPVEQYPDLAPP-------------NVRISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSSTGQMTVTLSFEAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGRMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D+ 
Sbjct: 170 SGVGDIDAYGSQYSM-RIWLDPNKLNSYQLTTQDVTDAISSQNAQIAVGQLGGTPSVDTQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPAQFRDITLRVNQDGSVVTLGDVAQVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L A         V          
Sbjct: 276 DYLSRYNGKAASGLGVKLASGANEMATADAVLKRLDELSAYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A L   G ++   ++
Sbjct: 336 SITDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFATLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +     + 
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLHKGEQHGQKGFFGAF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L         + +G     V
Sbjct: 516 NRVFNRSAARYERGVANILHRSLRWVVIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++ L+    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVQQLEAYYFTHEKENVASLFATIGSGPGGNGQNVARMFVRLKDWDD 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    +  
Sbjct: 636 RDPHTGTSFAIIERATKAFSKINEARVFA 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + L        + +A    +     +++   P 
Sbjct: 260 VTLGDVAQVEMGAEKYDYLSRYNGKAASGLGVKLASGANEMATADAVLKRLDELSAYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASITDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FATLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 61/187 (32%), Gaps = 8/187 (4%)

Query: 651  IQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
                E         L       +  +S + + + +   ++ W      +  + L +   L
Sbjct: 852  NFGLEWTAMSYQERLSGSQAPALYALSLLVVFLCLAALYESWSVPFSVMLVVPLGVIGAL 911

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                + G+E ++     +LT+IG S  + +++ +                     +  + 
Sbjct: 912  LATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFAND---ANARGQELVSATLDACRQR 968

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    VLPMA     G     +    +  G++ A   +IF      + +  
Sbjct: 969  LRPILMTSLAFVFGVLPMATSSGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRR 1028

Query: 826  WRAKNAR 832
                  R
Sbjct: 1029 RFPLKER 1035


>gi|48927349|emb|CAG34250.1| RND protein [Stenotrophomonas maltophilia]
          Length = 1040

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 79/702 (11%), Positives = 188/702 (26%), Gaps = 42/702 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  +  +P+  P                      
Sbjct: 8   RPIFAWVIAIIIMLAGGLALF-----KLPVSMYPNVAPPAVE---------ISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L        +        ITL+F      +    +V   LQ 
Sbjct: 54  AKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         + +     +     A + +  +    +D++       
Sbjct: 114 AMPLLPQEVQRQGINVAKSSSGFLNVIAFVSENGSMDANDIADYVGSNVVDRLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     + A+++      N        G            
Sbjct: 174 NIQVFG-GKYAMRIWLDPNKLHTYGLSVAEVTAAIKAQNAQVAIGQLGGAPSIKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +           
Sbjct: 233 TINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESYDFVT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +    +     +   T          +++         +          S   
Sbjct: 280 RYNGQPASGLAVTLATGANALDTAAGVDAALQDMKSFFPAGLKAEIPYDTTPFVRVSIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L++LG ++ + ++  +V
Sbjct: 340 VVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAMLGFSVNMLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+ T+  ++ +S+  AI +  A+   +++  K     +          + 
Sbjct: 460 SGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLKKGEHHVAHKGWSGRFFNG 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R        S  +      ++       GI     + +GVL  R     +   +
Sbjct: 520 FNRGFDR-------TSESYQRGVRGIIHRPWRFMGIVAALFVLMGVLFVRLPSSFLPNED 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTIQNTE 655
              L     +      E+        +      +   ++ V      +            
Sbjct: 573 QGVLMALVQAPVGATQERTLESIAALENHFLQNEKDAVDSVFSVQGFSFAGMGQNAGMAF 632

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           +     S      G++ +   A+A L  I   F + F   AI
Sbjct: 633 VKLKDWSERDANNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  D   +      + L        +++     ++   + +    P     
Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVDAALQDMKSFFPAGLKA 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     R  I+  +  +I + + + + +++  + +   L     + + +  T G  
Sbjct: 324 EIPYDTTPFVRVSIKGVVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+  + A++  IG  V+D +VV + +     +    +S  +   KS+ +  G 
Sbjct: 384 AMLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V   +      +PMA   GS       F+  +   + ++   +I +   +   +     
Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501

Query: 829 K 829
           K
Sbjct: 502 K 502



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 78/247 (31%), Gaps = 13/247 (5%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   +      +       V  S   +         +   N                
Sbjct: 779  QPFRMVPEDFDLWSVKNDKGEMVPFSAFATKHWDYGSPRLERYNGVSAMEIQGEPAPGVA 838

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   + ++ K+         T  + +         L+        +S + + + +  
Sbjct: 839  SGDAMAEIEQLAKQLPAGFGIEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAA 892

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             ++ W      +    L I   +      G+E ++    A+LT +G +  + +++ +  +
Sbjct: 893  MYESWSVPTAVLLAAPLGILGAVLANTFKGLERDIYFQVAMLTTVGLTSKNAILIVEFAK 952

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            +N+       S  + I  ++ + L   V TS+A  + V+P+A+    G     +    + 
Sbjct: 953  ENL---EKGASLIESIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVL 1009

Query: 803  FGIVVAA 809
             G++V  
Sbjct: 1010 GGMIVGT 1016


>gi|240171978|ref|ZP_04750637.1| preprotein translocase subunit SecF [Mycobacterium kansasii ATCC
           12478]
          Length = 436

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 133/294 (45%), Gaps = 11/294 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    GIS      +I  +   G  +GIDFKGG  +           V     ++L  
Sbjct: 56  GRRKLWYGISGGIVTIAILSIIVRGFTFGIDFKGGTTVSFPRGDVKVTEVEEVFHKTLGS 115

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659
              S        +  V+++ +   +    ++ + +            P     +   V  
Sbjct: 116 DPESVVTVGNGASATVQIRSKTLSNAQTEKLRDALFDAFHPKGADGKPSKKAISDAAVSE 175

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++ +K ++ +++  + + IYI +R++ Y  + AI  ++ D+T T G +AL G E  
Sbjct: 176 TWGGQITKKAVIALVVFLVLVAIYITVRYERYMTISAIAAMVFDLTVTAGVYALVGFEVT 235

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D V+V+D++ +N     +TT  +F +  + ++N+T  RS+ TS+
Sbjct: 236 PATVIGLLTILGFSIYDTVIVFDKVEENTNGFQHTTRRTFAEQANLAVNQTFMRSINTSL 295

Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + + V+ +      + G   +   A+    GI+V   SSIF A P+L+ + + 
Sbjct: 296 ISVLPVVALMVVAVWLLGVGTLKDLALVQLIGIIVGTYSSIFFATPLLVTLRER 349


>gi|240015937|ref|ZP_04722477.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae FA6140]
 gi|240125123|ref|ZP_04738009.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae
           SK-92-679]
 gi|268683721|ref|ZP_06150583.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae
           SK-92-679]
 gi|268624005|gb|EEZ56405.1| preprotein translocase subunit SecF [Neisseria gonorrhoeae
           SK-92-679]
          Length = 311

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 95/303 (31%), Positives = 166/303 (54%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L   GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVARGLNFSVEFTGGTVMEVQYQQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L++GD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKMRERLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +    I ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVNNGLMALGFVVIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +       +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRNPAMRGHTVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298

Query: 830 NAR 832
            A+
Sbjct: 299 IAK 301


>gi|146329873|ref|YP_001208975.1| preprotein translocase, SecF subunit [Dichelobacter nodosus
           VCS1703A]
 gi|146233343|gb|ABQ14321.1| preprotein translocase, SecF subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 306

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 152/292 (52%), Gaps = 4/292 (1%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +      I +M      + +S + ++  + L+   G N+G+DF GG  + +      D+ 
Sbjct: 1   MQIKIPYIHYMNYARHALILSGILTVLCLLLMIFRGFNFGLDFTGGATIELQYTEAADIP 60

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            VR  +  +       Q         V++++      +   +++ V   I    P   I 
Sbjct: 61  DVRKTVNQILPEATVLQYGSARD---VQIRFADDGRGSIDNLMQEVVTTIKARYPDVKIN 117

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
               +G +   ELI KGI  +++S + ++IY+ +RF+  FA+GA+ + + D+  T   F+
Sbjct: 118 GQSKIGGQYKSELIEKGITALVLSCVGLVIYLAVRFEMKFAIGAVLSQLHDVIATAAMFS 177

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G   +LT +AA+L ++GYSVND VVVYDR+R+N        + +++ID SIN+T+ R+
Sbjct: 178 LAGWTMDLTVLAALLAVLGYSVNDTVVVYDRIRENFLKTPHK-TAKEVIDASINQTMART 236

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + T +   ++V+ +  +GGS +  F+  M  GIV  + SSIF+A+ I L + 
Sbjct: 237 IVTGLTTALAVISLLFFGGSTLFGFSAAMLVGIVFGSYSSIFVASAIALKLG 288



 Score = 44.3 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 4/162 (2%)

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGATLTL 414
             S+ I KG  A+V   V +V+++ V +  K+ + A  S   +VI T A+ SL G T+ L
Sbjct: 126 YKSELIEKGITALVLSCVGLVIYLAVRFEMKFAIGAVLSQLHDVIATAAMFSLAGWTMDL 185

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAY-STIFDSNITAL 471
             +A ++  +G +V+  ++V +RIRE      +++    +D   ++    TI     TAL
Sbjct: 186 TVLAALLAVLGYSVNDTVVVYDRIRENFLKTPHKTAKEVIDASINQTMARTIVTGLTTAL 245

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
               +LFF G       A  +   +  S  +        +  
Sbjct: 246 AVISLLFFGGSTLFGFSAAMLVGIVFGSYSSIFVASAIALKL 287


>gi|261494987|ref|ZP_05991456.1| preprotein translocase subunit SecD [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309396|gb|EEY10630.1| preprotein translocase subunit SecD [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 602

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 165/523 (31%), Positives = 282/523 (53%), Gaps = 40/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + +  GLDL GG   ++EVD +  +        D LRS  +KE +
Sbjct: 93  NLAPATPQWLSDIGGSPMKRGLDLLGGVRFLMEVDMNTALAKQQDTLQDSLRSDFRKEKL 152

Query: 87  GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N  T + FAD+   E     V                  L +   + ++++
Sbjct: 153 QYQAVKKGENFATEVEFADNDTTEKAVRLVRR------------SHPTLDILVNDNKVTL 200

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             S   + +  + AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R ++L
Sbjct: 201 TPSAQALSESRTMAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEL 260

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V    +      G+           DG   ++  K  + G H+  AT+ 
Sbjct: 261 LGATATLEFRLVNTEANVASAAKGIVPADSELQNTRDGEPVVLRRKPSLGGEHIIDATSG 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD------------------GRV 302
            D +     V I  D  G     E+T+  I KP+A +                     + 
Sbjct: 321 TDERGLPQ-VSIRLDTEGGEMMGEITKMAIQKPMATLYTEFKDSGRKDANGKVILEKHQE 379

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q     + QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 380 VINVATIQTRLGNQFQITGINSPAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVK 439

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A + GL L +LF +  Y  +G+ A  ++ +N+ILT+ L+SL+GATLT+P IAGIVL
Sbjct: 440 QGMEASILGLGLTILFCLAFYKVFGIFASLALIVNMILTIGLMSLIGATLTMPGIAGIVL 499

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G++VD+N+L+ ERI+EE R  + +  ++  G++ A+S+IFDSN+T ++ ++VL+  G 
Sbjct: 500 AVGMSVDANVLIYERIKEEIRNGRPIQQAIHEGYNGAFSSIFDSNLTTILTSLVLYGVGT 559

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFA+T+ L ++ISMFTAI+  R ++ ++   K++K + I
Sbjct: 560 GPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKKLWI 602



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + +++G+   I+     +++    +K  F + A   LI+++  T+G  +L G
Sbjct: 428 TIGASLGADNVKQGMEASILGLGLTILFCLAFYKV-FGIFASLALIVNMILTIGLMSLIG 486

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G SV+  V++Y+R+++ ++        +  I +  N        +
Sbjct: 487 ATLTMPGIAGIVLAVGMSVDANVLIYERIKEEIR---NGRPIQQAIHEGYNGAFSSIFDS 543

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   ++ L +   G   +  FA+ +A G++++  ++I     ++ ++Y  +    
Sbjct: 544 NLTTILTSLVLYGVGTGPVKGFAVTLALGVIISMFTAITGTRMLVNWVYGGKRVKK 599


>gi|33601507|ref|NP_889067.1| acriflavine resistance protein B [Bordetella bronchiseptica RB50]
 gi|33575943|emb|CAE33022.1| acriflavine resistance protein B [Bordetella bronchiseptica RB50]
          Length = 1059

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/693 (10%), Positives = 184/693 (26%), Gaps = 43/693 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L        + ++P+  P              ++      
Sbjct: 8   RPVFAWVIAIVLMMAGALSIL-----SLPVAQYPNIAPPAI---------SINVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  ITL+F+     +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAV 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L ++ ++  +  T   +  ++++            + +  +     D I  +    
Sbjct: 114 AQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQDPISRTPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L     T + ++      N        G +          
Sbjct: 174 DFQLFGAP-YAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +                      +        +       +I           
Sbjct: 233 TVIGPSRL-------------QTPEAFGRILLKVNSDGSQVRLKDVASIELGAQTYAIDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T +        L+    P    +           S   
Sbjct: 280 YYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     S+    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMSQITGALIGIAMVLAAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  S+++S+  AI    A+   +           +       +   
Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGWFNRTF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   + +A    R +   +   ++    +   +         + +G +   V A  
Sbjct: 520 ERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQAPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  ++ +++     +  +       F V      G       +   ++        
Sbjct: 580 GATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                          R  +R     V      M
Sbjct: 640 EHRAAAVAARANAKFRAELRDAQAAVFAPPAVM 672



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 85/268 (31%), Gaps = 16/268 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +   A   V  S   S   +     ++  N     N   +         
Sbjct: 779  RMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGD 838

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +  K    I    T  + E              +  +  S I + + +   ++
Sbjct: 839  AMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAP----ALYAI--SLIVVFLCLAALYE 892

Query: 690  WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              +++     L++ +       A    G+  ++     +LT IG +  + +++ +  ++ 
Sbjct: 893  -SWSIPTAVMLVVPLGVVGALLATLTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKE- 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y    S  +    +  + L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 951  --HYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGG 1008

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++     +IF   P+   +     K  R
Sbjct: 1009 MLTGTFLAIFFV-PLFFVLTLRLFKVKR 1035



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 81/237 (34%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V S     Q   I         + L        +++   + +      +    
Sbjct: 258 SQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I   +  +  + + + + +++  +     L     + + + 
Sbjct: 318 PPGMDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R    KS+
Sbjct: 378 GTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPRQATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  +  +M      +PMA +GGS       F+I +   +V++   +I     +
Sbjct: 436 SQITGALIGIAMVLAAVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPAL 492


>gi|333008152|gb|EGK27627.1| inner membrane protein [Shigella flexneri VA-6]
          Length = 1049

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E ++        L T    +  G      L       +  +S I + + +   ++ W   
Sbjct: 839  EAMELMEQLASKLPTGVGYDWTGMSYQERLSGNQAPSLYAVSLIVVFLCLAALYESWSTP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LIEATLDAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|254429775|ref|ZP_05043482.1| RND transporter, HAE1 family [Alcanivorax sp. DG881]
 gi|196195944|gb|EDX90903.1| RND transporter, HAE1 family [Alcanivorax sp. DG881]
          Length = 1041

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 187/689 (27%), Gaps = 50/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L           ++++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIMMMAGALAI-----YTLPIEQYPTVAPP-------------QVSIAGNY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       + L+FA     +    +V  
Sbjct: 50  PGASAKTVEDSVTQVIEQQMNGIDNLLYMSSSSDSFGNAAVNLTFAPGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +  T   +  ++++    +       + +  I     D +   
Sbjct: 110 KLQLATPLLPQEVQQQGMQVTKSSDSFLMVAAFTSEDGSLSRADLADYIASNVQDPVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L +   T   ++    + NN       G     +  
Sbjct: 170 PGVGQIQLFGSP-YAMRIWLDPNKLNKFDLTPQDITQTIQVQNNQVASGQLGGAPAVEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +  +              +    +        + F      +       
Sbjct: 229 QLNATIIAQTRLEDVD-------------QFKNILLKVNPDGSQVFLKDVARVELAAQNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +     +   T E      A L          +           
Sbjct: 276 DVQGRYNGQPAAGLAINLATGANALDTAEALRARLAELEPYFPDKMEMVFPYDTTPFVSI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIEEVVHTLFEAIILVFLVMYLFLQNFRATLIPTLAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMHEEGLPPKEATRKSMGQITGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           + FF G      R F+IT+  ++++S+  A+ +  A+   +           +      +
Sbjct: 456 MAFFPGSTGAIYRQFSITIVSAMVLSVLVAMILTPALCATMLKAKDSEHQTDHGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        +     R   +     I+  +     +         + +G +   V 
Sbjct: 516 RTFDRGTRRYQGSVEKILGRRGRYLFIYVIIVGVLGFSFMRLPSSFLPEEDQGILFTLVT 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                        L+ ++   ++ ++   +  F V      G           +K     
Sbjct: 576 LPAGSTQEQTVDVLKKMEDYYLNEESSAVDGLFTVAGFSFTGQGQNAGMAFVNLKDWSER 635

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            + +    N           +    +  +
Sbjct: 636 DLSVDGANNVVGRAMGYFSTIREAMMFAL 664



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 102/320 (31%), Gaps = 8/320 (2%)

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +      M   +   K+   D+ P      I              G   ++     +  +
Sbjct: 177 LFGSPYAMRIWLDPNKLNKFDLTPQDITQTIQVQNNQVASG--QLGGAPAVEGQQLNATI 234

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +    L     FK  +         V L  V     + Q  D+  +        L     
Sbjct: 235 IAQTRLEDVDQFKNILLKVNPDGSQVFLKDVARVELAAQNYDVQGRYNGQPAAGLAINLA 294

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
              +++     L     ++    P                  I + +  +  + I + + 
Sbjct: 295 TGANALDTAEALRARLAELEPYFPDKMEMVFPYDTTPFVSISIEEVVHTLFEAIILVFLV 354

Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           +++  + +   L     + + +  T    A FG   N   +  ++  IG  V+D +VV +
Sbjct: 355 MYLFLQNFRATLIPTLAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVE 414

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAI 799
            +     ++   +  ++   KS+ +  G  V  ++      +PMA + GS       F+I
Sbjct: 415 NV--ERVMHEEGLPPKEATRKSMGQITGALVGIALVLSAVFIPMAFFPGSTGAIYRQFSI 472

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +   +V++   ++ +   +
Sbjct: 473 TIVSAMVLSVLVAMILTPAL 492



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 72/248 (29%), Gaps = 13/248 (5%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N+   +            G    + ++G  +  ++    PG S              
Sbjct: 788  VRNNQGEMVPFSTFATGHWTYGSPKLERYNGVSSVNIQGNAAPGYSTGDAMDAMEELSAK 847

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                             +   +     I+ +++  + +     +   W         L++
Sbjct: 848  LPAGFGFEWTGMSYQERQSGDQAPALYIISLLVVFLCLA---ALYESWSIPFA--VMLVV 902

Query: 703  DITKTLGFFALFGIEFNLTAVA--AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A    + N        +LT IG S  + +++ +   +   L          
Sbjct: 903  PLGILGAVLAATFRDLNNDVFFQVGLLTTIGLSAKNAILIAEFALE---LEQKGEHLLKA 959

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
              +++   L   + TS+A  + V P+ +    G     +    +  G++ A   +IF   
Sbjct: 960  TLEAVRMRLRPILMTSLAFMLGVTPLMISTGAGAGARNAIGTGVFGGMLTATVLAIFFIP 1019

Query: 818  PILLFIYD 825
               + +  
Sbjct: 1020 LFYVAVRK 1027


>gi|118589131|ref|ZP_01546538.1| probable protein-export membrane protein [Stappia aggregata IAM
           12614]
 gi|118438460|gb|EAV45094.1| probable protein-export membrane protein [Stappia aggregata IAM
           12614]
          Length = 316

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 125/297 (42%), Positives = 185/297 (62%), Gaps = 3/297 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            ++PD   I+FM  R     +SI+  I SI   FT GLNYGIDFKGG  + +  + P D+
Sbjct: 4   RIVPDNTKIKFMWLRKVSFPLSIVLVIASITAFFTVGLNYGIDFKGGTIIEIKTDGPADV 63

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + +RS+L SL +GD+  Q F G  + L+R++ QPG  +AQ  V+  V+            
Sbjct: 64  ASIRSDLSSLNLGDVQVQEFGGSDDILIRVEEQPGGELAQQAVVGKVRTIFE--GQEVDF 121

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  E+VGP++S EL + G + V  S +A+L YIW RF+W FA+GAI T   D+  T+G F
Sbjct: 122 RRVEVVGPRVSGELAQAGAIAVAASLLAILFYIWFRFEWQFAVGAILTTANDVVITIGLF 181

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L  ++F+L+++AAVLT+IGYS+ND VVVYDR+R+N++ Y       +++D SINETL R
Sbjct: 182 VLLQLDFSLSSIAAVLTIIGYSLNDTVVVYDRIRENLRKYKKR-PLTEVLDMSINETLSR 240

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  TS+   +++  + ++GG VI SF + M FGIV+   SSIF+AAP L+       
Sbjct: 241 TTMTSLTTLLALFALYIFGGEVIQSFTLAMIFGIVIGTYSSIFLAAPFLILFNLRAE 297


>gi|16766686|ref|NP_462301.1| multidrug transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197263078|ref|ZP_03163152.1| AcrB protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|16421952|gb|AAL22260.1| RND family multidrug transport protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197241333|gb|EDY23953.1| AcrB protein [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|301159940|emb|CBW19459.1| acriflavin resistance protein F [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914419|dbj|BAJ38393.1| multidrug transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321225186|gb|EFX50245.1| RND efflux system, inner membrane transporter CmeB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323131754|gb|ADX19184.1| multidrug transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 1037

 Score =  201 bits (511), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 74/684 (10%), Positives = 187/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T     +  A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++  S   + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F+IT+  ++ +S+  A+ +  A+   +          KK          
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518

Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +           R    + +   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 97/269 (36%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680
           +   G +   T     VK    +      ++           ++ I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++S R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|307139103|ref|ZP_07498459.1| aminoglycoside/multidrug efflux system [Escherichia coli H736]
 gi|331643084|ref|ZP_08344219.1| aminoglycoside/multidrug efflux system [Escherichia coli H736]
 gi|315615712|gb|EFU96344.1| inner membrane protein [Escherichia coli 3431]
 gi|331039882|gb|EGI12102.1| aminoglycoside/multidrug efflux system [Escherichia coli H736]
          Length = 1037

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEHNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|319896575|ref|YP_004134768.1| protein-export membrane protein secd [Haemophilus influenzae F3031]
 gi|317432077|emb|CBY80427.1| protein-export membrane protein SecD [Haemophilus influenzae F3031]
          Length = 616

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 147/516 (28%), Positives = 269/516 (52%), Gaps = 36/516 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + S    N +  GLDLRGG   ++EVD +  +    +   D LR  L+KE I   +++
Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169

Query: 93  QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
             +     ++ A+   +      +                   +       I++ LS   
Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA 
Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278

Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  N +                 D  G+   +  +  + G H+  +++  D  + 
Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
            P V ++ D  G     + T+    KP+A +                             
Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q       QI+G  +I  A   + +L++G+L   + IVEER +G  LG+ ++ +G  A 
Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNFSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GLV ++ FM+  Y  +G++A F++ +N++L + L+S+L  ATL++P IAGIVL +G++
Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ERI+EE R  +S+  +++ G++ A+++IFD+N+T ++  ++L+  G G ++G
Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNSAFTSIFDANLTTILTAIILYAVGTGPIQG 578

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           FAIT+ L + ISMFTAI+  RA++  +   K++K +
Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +GI   +   +A++ ++   +K  F + A   L+++I   +G  ++  
Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G SV+  V++++R+++ ++      S +  I++  N        
Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNSAFTSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   I  FAI ++ G+ ++  ++I     ++  +Y  +    
Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613


>gi|33592135|ref|NP_879779.1| acriflavine resistance protein B [Bordetella pertussis Tohama I]
 gi|33571779|emb|CAE41286.1| acriflavine resistance protein B [Bordetella pertussis Tohama I]
 gi|332381551|gb|AEE66398.1| acriflavine resistance protein B [Bordetella pertussis CS]
          Length = 1059

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/693 (10%), Positives = 183/693 (26%), Gaps = 43/693 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L        + ++P+  P              ++      
Sbjct: 8   RPVFAWVIAIVLMMAGALSIL-----SLPVAQYPNIAPPAI---------SINVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  ITL+F+     +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQMNGIDNLQYISSESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAV 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L ++ ++  +  T   +  ++++            + +  +     D I  +    
Sbjct: 114 AQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVASYIQDPISRTPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L     T + ++      N        G +          
Sbjct: 174 NFQLFGAP-YAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +                      +        +       +I           
Sbjct: 233 TVIGPSRL-------------QTPEAFGRILLKVNRDGSQVRLKDVASIELGAQTYAIDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T +        L+    P    +           S   
Sbjct: 280 YYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPGMDVVYPYDTTPFVSLSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMGQITGALIGIAMVLAAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  S+++S+  AI    A+   +           +       +   
Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGWFNRTF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   + +A    R +   +   ++    +   +         + +G +   V A  
Sbjct: 520 ERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPTAFLPDEDQGILFAQVQAPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  ++ +++     +  +       F V      G       +   ++        
Sbjct: 580 GATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                          R  +R     V      M
Sbjct: 640 EHRAAAVAARANAKFRAELRDAQAAVFAPPAVM 672



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 85/268 (31%), Gaps = 16/268 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +   A   V  S   S   +     ++  N     N   +         
Sbjct: 779  RMLPQDLDKWYVRNNAGDMVPFSAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGD 838

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +  K    I    T  + E              +  +  S I + + +   ++
Sbjct: 839  AMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAP----ALYAI--SLIVVFLCLAALYE 892

Query: 690  WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              +++     L++ +       A    G+  ++     +LT IG +  + +++ +  ++ 
Sbjct: 893  -SWSIPTAVMLVVPLGVVGALLATMTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKE- 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y    S  +    +  + L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 951  --HYEEGASLTEAAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGG 1008

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++     +IF   P+   +     K  R
Sbjct: 1009 MLTGTFLAIFFV-PLFFVLTLRLFKVKR 1035



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 80/240 (33%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V S     Q   I         + L        +++   + +      + 
Sbjct: 255 RDGSQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLK 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                  I   +  +  + + + + +++  +     L     + +
Sbjct: 315 PYFPPGMDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R    
Sbjct: 375 VLLGTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPRQATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+ +  G  +  +M      +PMA +GGS       F+I +   +V++   +I     +
Sbjct: 433 KSMGQITGALIGIAMVLAAVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVVVAIVFTPAL 492


>gi|54025660|ref|YP_119902.1| preprotein translocase subunit SecF [Nocardia farcinica IFM 10152]
 gi|54017168|dbj|BAD58538.1| putative protein exporter membrane protein [Nocardia farcinica IFM
           10152]
          Length = 414

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 140/313 (44%), Gaps = 11/313 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     AI  +  R     I+ L  + S+  +   G N+GIDF+GG ++   A
Sbjct: 36  RHGFFNRLYTGTGAIDVIGKRRMWYAITALIVLISLASMLVRGFNFGIDFEGGSRIQFPA 95

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                  V      +L    +S Q         + ++ +   +    ++   +  +   +
Sbjct: 96  GDATTSEVETVYHNTLGTDPVSVQTVGSGSTATMLIRSEALSTEQADQLASALFTEFQPL 155

Query: 646 VPLSTIQN----TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                       T  V      ++ RK ++ +++  + + +YI +RF+   A+ A+  L+
Sbjct: 156 GNDGQPSRAAISTSDVSETWGDQITRKALIALLVFLVIVSVYIAVRFERDMAIAAMAALV 215

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRD 759
            D+  T G ++L G+E     V  +LT++G+S+ D VVV+D++ +N +  L+    ++ +
Sbjct: 216 FDVGVTAGIYSLVGLEVTPATVIGILTILGFSLYDSVVVFDKVEENTRGILHLNRRTYAE 275

Query: 760 LIDKSINETLGRSVYTSMAAFIS-----VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
             + ++N+TL RS+ T++   +      V+ + + G   +   A+    G++V   SSIF
Sbjct: 276 QANLAVNQTLMRSINTALIGILPIVGLIVIAVWMLGVGTLKDLALVQLVGLLVGTYSSIF 335

Query: 815 IAAPILLFIYDWR 827
            A P+L+ + +  
Sbjct: 336 FATPLLVSLKERW 348


>gi|206602539|gb|EDZ39020.1| SecD export membrane protein [Leptospirillum sp. Group II '5-way
           CG']
          Length = 524

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 176/535 (32%), Positives = 275/535 (51%), Gaps = 42/535 (7%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPS-------AMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
              +G    L   L    L  +          +P  +ISLGLDL+GG  + L+VD +  V
Sbjct: 9   FTLLGGAALLSFLLLLPSLPVWKDLPQGLRKVLPSGKISLGLDLKGGMSVTLQVDREKAV 68

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
           +G LQ  +                       I     +        + +   +      L
Sbjct: 69  DGTLQEIAT-------AMKTPDMQPSIQGPAIHFPVPEGEQ----RETIKKRIARHYPYL 117

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                   L ++    ++  LS     ++  HA+ Q+ME+IR RIDQ G++E  I+R G 
Sbjct: 118 -------TLSSSDASGVTFSLSPAEQKRIRKHAMTQAMEVIRNRIDQFGVAEPLIERQGK 170

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG----------------V 230
            RIL++LPG  DP R   L+G TA++ F  V   N     +                   
Sbjct: 171 DRILVELPGINDPERAMSLIGRTARLQFLLVDDKNPDADKILEKKAPVPTADEILFSHRT 230

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                     YL+     +SG  ++ A   F     +P V ++F+  GA+ F  +TR+++
Sbjct: 231 DTNGQRIELPYLLVHGALMSGDLISDARVAFGQFN-EPYVSLTFNSAGAKLFDTITREHV 289

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
            + LA+VLD  V +APVI + I  G+AQI+GNFT++ A  L+ +LR+G+LP  ++I++  
Sbjct: 290 KERLAIVLDNVVYSAPVIQEEIAGGQAQITGNFTLKEAKDLSIVLRSGALPAPVHILQNV 349

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VG  LG DSI  G  A +   +L++LFM V Y   G++AD ++ LN+IL +  ++ L A
Sbjct: 350 TVGPSLGKDSIRAGIRATIFAGILVLLFMAVYYRLSGMIADGALVLNLILLVGAMAALHA 409

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAGI+L IG+ VDSN+L+ ERIREE R  + V  ++D G+ +A+ TI DS++T 
Sbjct: 410 TLTLPGIAGIILTIGMGVDSNVLIFERIREELRLGKPVRSAIDSGYDKAFLTIVDSHVTT 469

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           LI  ++LF FG G ++GFA+T+ + I I++FTA+   R +   +   KK+  + I
Sbjct: 470 LITALILFIFGTGPIKGFAVTLSVGIAINLFTALVGTRVVFDAMTARKKLDRLSI 524



 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 40/184 (21%), Positives = 87/184 (47%), Gaps = 5/184 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I     VGP + ++ IR GI   I + I +L+++ + ++    + A   L+L++   +G
Sbjct: 344 HILQNVTVGPSLGKDSIRAGIRATIFAGILVLLFMAVYYRLS-GMIADGALVLNLILLVG 402

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             A       L  +A ++  IG  V+  V++++R+R+ ++L       R  ID   ++  
Sbjct: 403 AMAALHATLTLPGIAGIILTIGMGVDSNVLIFERIREELRL---GKPVRSAIDSGYDKAF 459

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              V + +   I+ L + ++G   I  FA+ ++ GI +   +++ +   ++      R K
Sbjct: 460 LTIVDSHVTTLITALILFIFGTGPIKGFAVTLSVGIAINLFTAL-VGTRVVFDAMTARKK 518

Query: 830 NARI 833
             R+
Sbjct: 519 LDRL 522


>gi|194443851|ref|YP_002042648.1| AcrB protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194402514|gb|ACF62736.1| AcrB protein [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
          Length = 1037

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/684 (10%), Positives = 185/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T        A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++      + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F+IT+  ++ +S+  A+ +  A+   +          KK          
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518

Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +           R    + +   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 95/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T   ++    ++    P               +  I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++  R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|15832586|ref|NP_311359.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7
           str. Sakai]
 gi|168761071|ref|ZP_02786078.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4501]
 gi|217327886|ref|ZP_03443969.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           TW14588]
 gi|13362802|dbj|BAB36755.1| aminoglycoside efflux pump [Escherichia coli O157:H7 str. Sakai]
 gi|189368385|gb|EDU86801.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           EC4501]
 gi|217320253|gb|EEC28678.1| acriflavine resistance protein D [Escherichia coli O157:H7 str.
           TW14588]
 gi|326344949|gb|EGD68693.1| putative aminoglycoside efflux pump [Escherichia coli O157:H7 str.
           1044]
          Length = 1037

 Score =  201 bits (511), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   L      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGLTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                              
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATAEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATAEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|110804489|ref|YP_688009.1| acriflavin resistance protein [Shigella flexneri 5 str. 8401]
 gi|110614037|gb|ABF02704.1| acridine efflux pump [Shigella flexneri 5 str. 8401]
          Length = 1049

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSTPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|291281368|ref|YP_003498186.1| acriflavine resistance protein B [Escherichia coli O55:H7 str.
           CB9615]
 gi|209778468|gb|ACI87546.1| acridine efflux pump [Escherichia coli]
 gi|209778474|gb|ACI87549.1| acridine efflux pump [Escherichia coli]
 gi|290761241|gb|ADD55202.1| Acriflavine resistance protein B [Escherichia coli O55:H7 str.
           CB9615]
 gi|320638456|gb|EFX08170.1| multidrug efflux system protein AcrB [Escherichia coli O157:H7 str.
           G5101]
 gi|320643837|gb|EFX12960.1| multidrug efflux system protein AcrB [Escherichia coli O157:H- str.
           493-89]
 gi|320649188|gb|EFX17766.1| multidrug efflux system protein AcrB [Escherichia coli O157:H- str.
           H 2687]
 gi|320656081|gb|EFX23997.1| multidrug efflux system protein AcrB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661231|gb|EFX28662.1| multidrug efflux system protein AcrB [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320665207|gb|EFX32300.1| multidrug efflux system protein AcrB [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 1049

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|198244653|ref|YP_002217361.1| AcrB protein [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|197939169|gb|ACH76502.1| AcrB protein [Salmonella enterica subsp. enterica serovar Dublin
           str. CT_02021853]
 gi|326625140|gb|EGE31485.1| AcrB protein [Salmonella enterica subsp. enterica serovar Dublin
           str. 3246]
          Length = 1037

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/684 (10%), Positives = 185/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T        A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++      + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F+IT+  ++ +S+  A+ +  A+   +          KK          
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518

Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +           R    + +   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 95/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T   ++    ++    P               +  I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++  R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|74311041|ref|YP_309460.1| acridine efflux pump [Shigella sonnei Ss046]
 gi|73854518|gb|AAZ87225.1| acridine efflux pump [Shigella sonnei Ss046]
          Length = 1049

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|283836185|ref|ZP_06355926.1| acriflavine resistance protein F [Citrobacter youngae ATCC 29220]
 gi|291067536|gb|EFE05645.1| acriflavine resistance protein F [Citrobacter youngae ATCC 29220]
          Length = 1037

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 69/684 (10%), Positives = 187/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPQTTQDDISDYVASNVKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G      +    
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLQVQNDQIAAGQLGGTPALPNQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNSDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T          L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTANAIKAKLVELQPFFPQGMKVVYPYDTTPFVTISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++      + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526
           FGG      R F+IT+  ++ +S+  A+ +  A+   +           +       +  
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNAK 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    + ++    +   + +   I+    ++  +         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRKTGRYLIVYLIIVIGMAVLFMRLPTSFLPDEDQGVFMTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 AGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGLAFVSLKPWDERSG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 KENSVEAVIARATRAFSQIRDGLV 662



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 79/203 (38%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    L  ++    + + +    +T         E+++     +I+  + M +++ 
Sbjct: 301 DTANAIKAKLVELQPFFPQGMKVVYPYDTTPFVTISIHEVVKTLFEAIILVFLVMYLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T    A FG   N   +  ++  IG  V+D +VV + + 
Sbjct: 361 ---NIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +   ++  ++  +KS+++  G  V  +M      +PMA +GGS       F+I + 
Sbjct: 417 -ERVMMEDNLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             + ++   ++ +   +   +  
Sbjct: 476 SAMALSVLVALILTPALCATLLK 498



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +    +    L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMALMESLAEKLPNGIGHDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   ++ G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGVVGALLAASIRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|169831514|ref|YP_001717496.1| preprotein translocase subunit SecF [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638358|gb|ACA59864.1| protein-export membrane protein SecF [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 293

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 90/293 (30%), Positives = 153/293 (52%), Gaps = 7/293 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+R R +   IS+L  +  I  L   GLN GIDF GG  + V   + V +  VR+ L 
Sbjct: 2   FHFVRQRKYWYLISLLIIVPGIISLLFRGLNLGIDFTGGSLVEVQFQKQVSVQEVRAVLT 61

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
              +     Q            Q      V      + + + + + V   T+   E VGP
Sbjct: 62  GHGLERSVIQLSGD-------RQVLIRTGVITETQNQAMIESLGKEVGTLTVLRNEAVGP 114

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I +EL ++ I+ ++ +A+A+++YI  RF++   L AI  L+ D   T+G F+LF I+ +
Sbjct: 115 VIGKELAQRAILALLAAAVAIVVYISWRFEFKQGLAAIVALLHDALITIGIFSLFWIQVD 174

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
              VAAVLT++GYS+N  +V++DR+R+N K    +    D++++S+ +T+ RS+ TS+  
Sbjct: 175 SAFVAAVLTILGYSINATIVIFDRIRENAKAAKKTEPLEDVVNRSLWDTMARSINTSVTV 234

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +L +   GG+ + +F + +  G+V    SSIFIA P+ L +     ++ R
Sbjct: 235 MFMLLALFFLGGATLKAFVLALMIGVVSGTWSSIFIAGPVWLDLRKRLPRSKR 287


>gi|200387366|ref|ZP_03213978.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|207858639|ref|YP_002245290.1| acriflavin resistance protein F [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|199604464|gb|EDZ03009.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|206710442|emb|CAR34800.1| acriflavin resistance protein F [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 1037

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/684 (10%), Positives = 185/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T        A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++      + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F+IT+  ++ +S+  A+ +  A+   +          KK          
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTR 518

Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +           R    + +   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 95/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T   ++    ++    P               +  I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++  R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMENLASQLPNGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|120597889|ref|YP_962463.1| preprotein translocase subunit SecD [Shewanella sp. W3-18-1]
 gi|146293939|ref|YP_001184363.1| preprotein translocase subunit SecD [Shewanella putrefaciens CN-32]
 gi|120557982|gb|ABM23909.1| protein-export membrane protein SecD [Shewanella sp. W3-18-1]
 gi|145565629|gb|ABP76564.1| protein-export membrane protein SecD [Shewanella putrefaciens
           CN-32]
          Length = 604

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 161/527 (30%), Positives = 275/527 (52%), Gaps = 34/527 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  ++  P  L  S+    PS +       I LGLDLRGG   +L+VD +       +
Sbjct: 94  TLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVEPVYQTQAE 153

Query: 72  MYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
              D LR F++++ I   S+     +++ ++  D+  +  +   +        S      
Sbjct: 154 ALVDSLRQFIREQNIRGASVHLDQSSQLNVTLPDNDARAAVRQMMKQSYPNWQS------ 207

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
                    +  + I LSQ    ++ +  ++Q+++++R RI+++GI+E+ +QR G HRI 
Sbjct: 208 -----SNADDAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGEHRIR 262

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           I+LPG QDP+  + ++G TA ++F +V               L+D  GN   V     + 
Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLKDKSGNSVYVGRTPVLG 317

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306
           G H+  A A+         V+I+ D +G ++  E +R NIGKP+A               
Sbjct: 318 GDHIVDARASIGEMGM-AEVNINLDRVGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAK 376

Query: 307 --------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                      Q+    + +I+G  T + A  LA +LRAGS+   + IVEER +G  LG+
Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
           ++I  G  A+  G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A LTLP I
Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG+VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STIFD+N T +I  VVL
Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +  G G ++GFA+T+GL +L SMFT I   RA++  +      + + 
Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    + +          +    ++ L       G    Q
Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I  G   + +     L+++ + ++  
Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID   +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  ++  +Y   A  
Sbjct: 581 TGIFASRALINLVYGRDASR 600


>gi|148381013|ref|YP_001255554.1| protein-export membrane protein SecF [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931377|ref|YP_001385384.1| preprotein translocase subunit SecF [Clostridium botulinum A str.
           ATCC 19397]
 gi|153937085|ref|YP_001388791.1| preprotein translocase subunit SecF [Clostridium botulinum A str.
           Hall]
 gi|148290497|emb|CAL84625.1| protein-export membrane protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927421|gb|ABS32921.1| protein-export membrane protein SecF [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932999|gb|ABS38498.1| protein-export membrane protein SecF [Clostridium botulinum A str.
           Hall]
          Length = 287

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 148/287 (51%), Gaps = 8/287 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS++  +  +  L   GLNYGIDFKGG  + +   +      V   ++     
Sbjct: 7   KTKIWFSISLIIILTGMFFLMKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ +      N  + ++          ++   +K K         + + + +GP + +E
Sbjct: 67  SVTNKV----NNTQIEIRSNSLTDEEINKLFSDIKSKYNLKDKD--LVSQQRIGPSVGKE 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L RK ++ +II+ IAMLIY+ IRF++ FAL AI  L+ DI  T+  +A+F +  + + +A
Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFNFALAAILGLVHDILITISVYAIFKLPVSSSFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           AVLT++GYS+ND +V++DR+R+N K         ++ + SI +T+ RS+ T +    +++
Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DISEIANISITQTMSRSINTVLTTLFTIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + V+    I  FA P+  GI+    SSIFI++P+ +     +  N 
Sbjct: 240 SVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTKLGNK 285


>gi|260853684|ref|YP_003227575.1| multidrug efflux system protein AcrB [Escherichia coli O26:H11 str.
           11368]
 gi|260866622|ref|YP_003233024.1| multidrug efflux system protein AcrB [Escherichia coli O111:H- str.
           11128]
 gi|257752333|dbj|BAI23835.1| multidrug efflux system protein AcrB [Escherichia coli O26:H11 str.
           11368]
 gi|257762978|dbj|BAI34473.1| multidrug efflux system protein AcrB [Escherichia coli O111:H- str.
           11128]
 gi|323153501|gb|EFZ39755.1| inner membrane protein [Escherichia coli EPECa14]
 gi|323178267|gb|EFZ63845.1| inner membrane protein [Escherichia coli 1180]
          Length = 1049

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|167037437|ref|YP_001665015.1| preprotein translocase subunit SecF [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040103|ref|YP_001663088.1| preprotein translocase subunit SecF [Thermoanaerobacter sp. X514]
 gi|256752580|ref|ZP_05493434.1| protein-export membrane protein SecF [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914187|ref|ZP_07131503.1| protein-export membrane protein SecF [Thermoanaerobacter sp. X561]
 gi|307724578|ref|YP_003904329.1| protein-export membrane protein SecF [Thermoanaerobacter sp. X513]
 gi|320115850|ref|YP_004186009.1| protein-export membrane protein SecF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166854343|gb|ABY92752.1| protein-export membrane protein SecF [Thermoanaerobacter sp. X514]
 gi|166856271|gb|ABY94679.1| protein-export membrane protein SecF [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748518|gb|EEU61568.1| protein-export membrane protein SecF [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889122|gb|EFK84268.1| protein-export membrane protein SecF [Thermoanaerobacter sp. X561]
 gi|307581639|gb|ADN55038.1| protein-export membrane protein SecF [Thermoanaerobacter sp. X513]
 gi|319928941|gb|ADV79626.1| protein-export membrane protein SecF [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 303

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 73/297 (24%), Positives = 143/297 (48%), Gaps = 4/297 (1%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I  +        IS +  +  +  +F +G N+GIDF GG  +     +  D + +
Sbjct: 3   QHRFHIDVIGKTKIWFAISGIVILIGVIAMFVNGFNWGIDFTGGTIMEFQIGKSFDTADI 62

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              L + ++ D   Q    + + +        +    + + ++        +  + +  +
Sbjct: 63  IKILNNYKVKDFQVQKIGTKGDTVSIKTSPISNETRLSIIKDIES---KYNLTENDLIMS 119

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           + VGP +  E+    I  +++++  M IY+  RF++  +  A+  L+ D+   +  +A+F
Sbjct: 120 QQVGPSLGAEIKFGMIRALLLASAVMFIYLGFRFEFEMSGAAVIALLHDVIILISIYAIF 179

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N   +AAVLT+ GYSVN  VV++DR+R N+K+   S  +  + + S+N+TL RS+ 
Sbjct: 180 HITVNAPFIAAVLTVFGYSVNATVVIFDRIRDNLKIMRRS-DYAKIANVSVNQTLTRSIN 238

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++   I ++ M   G   +  FA+P+  GI+    SSIFI+ P+ + I +   +  
Sbjct: 239 TTLTTLIILVLMYFLGPKALKDFALPLLIGIISGTYSSIFISTPLWVLIKNREKRRK 295


>gi|169632424|ref|YP_001706160.1| preprotein translocase subunit SecF [Acinetobacter baumannii SDF]
 gi|169151216|emb|CAO99899.1| preprotein translocase, IISP family, membrane subunit
           [Acinetobacter baumannii]
          Length = 321

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 157/310 (50%), Gaps = 4/310 (1%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M  +   P  ++  + D   I FM+        SIL ++ SI  + T GLN G+DF GG
Sbjct: 1   MMTKVTQQPSKQYGRLVDAKIIPFMKIAKPAAIFSILITLASIFFIGTKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +   +   +P + + V   L+     D   Q     K+ LVR+  Q         +   +
Sbjct: 61  VSAELNYAQPANQAEVIQALDKAGFKDAVVQTLGSNKDLLVRMPVQDIKVE---DLNNAI 117

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K +      + +   + VG ++  EL  +    V ++ I MLIY+ IRF++  A+GA+ 
Sbjct: 118 TKAVQLPNNAAEVHKVDSVGGQVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVM 177

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  DI   +G FALF   F+LT +AAVL +IG+S+ND +VV DR+R+N +      + R
Sbjct: 178 SLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-RGATPR 236

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +++D ++ ETL R+++TSM   + VL M   GG  +  F++ M  G+ V   SSI+I   
Sbjct: 237 EIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSIYIGTA 296

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 297 FALWRGLNRQ 306


>gi|110611192|gb|ABG77966.1| AcrB [Enterobacter cloacae]
          Length = 1048

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 68/685 (9%), Positives = 176/685 (25%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLSIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +          +           S   
Sbjct: 280 KFNGKPASGLGIKLATGANALDTATAIRAELKKMEPYFPSGLKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++ +S+  A+ +  A+   +                   +   
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGGHGEHKGFFGWFNRMF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + +   I+ +  +I  +         + +G          
Sbjct: 520 DKSTHHYTDSVGNILRSTGRYLLLYIIIVAGMAILFVRLPSSFLPDEDQGVFLTMAQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +    ++ +  + E  F V      G           +K        
Sbjct: 580 GASQERTQKVLDEVTDYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGK 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            + ++           ++    +  
Sbjct: 640 ENKVEAITGRAMGTFSQIKDAMVFA 664



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGKPASGLGIKLATGANALDTATAIRAELKKMEPYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMNLMEELASKLPSGVGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + VLP+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|16128446|ref|NP_414995.1| multidrug efflux system protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|82542955|ref|YP_406902.1| acridine efflux pump [Shigella boydii Sb227]
 gi|89107331|ref|AP_001111.1| multidrug efflux system protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|91209535|ref|YP_539521.1| acridine efflux pump [Escherichia coli UTI89]
 gi|117622720|ref|YP_851633.1| acridine efflux pump [Escherichia coli APEC O1]
 gi|157156955|ref|YP_001461647.1| acriflavine resistance protein B [Escherichia coli E24377A]
 gi|157159988|ref|YP_001457306.1| acriflavine resistance protein B [Escherichia coli HS]
 gi|170021150|ref|YP_001726104.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Escherichia
           coli ATCC 8739]
 gi|170080047|ref|YP_001729367.1| multidrug efflux system protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170680127|ref|YP_001742606.1| acriflavine resistance protein B [Escherichia coli SMS-3-5]
 gi|188496392|ref|ZP_03003662.1| acriflavine resistance protein B [Escherichia coli 53638]
 gi|191167501|ref|ZP_03029314.1| acriflavine resistance protein B [Escherichia coli B7A]
 gi|193064202|ref|ZP_03045286.1| acriflavine resistance protein B [Escherichia coli E22]
 gi|193067539|ref|ZP_03048506.1| acriflavine resistance protein B [Escherichia coli E110019]
 gi|194429033|ref|ZP_03061565.1| acriflavine resistance protein B [Escherichia coli B171]
 gi|194437486|ref|ZP_03069583.1| acriflavine resistance protein B [Escherichia coli 101-1]
 gi|209917678|ref|YP_002291762.1| acridine efflux pump protein AcrB [Escherichia coli SE11]
 gi|218557372|ref|YP_002390285.1| multidrug efflux system protein [Escherichia coli S88]
 gi|218693924|ref|YP_002401591.1| multidrug efflux system protein [Escherichia coli 55989]
 gi|237707542|ref|ZP_04538023.1| acriflavine resistance protein B [Escherichia sp. 3_2_53FAA]
 gi|238899749|ref|YP_002925545.1| multidrug efflux system protein [Escherichia coli BW2952]
 gi|253774548|ref|YP_003037379.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|256020433|ref|ZP_05434298.1| multidrug efflux system protein [Shigella sp. D9]
 gi|256023920|ref|ZP_05437785.1| multidrug efflux system protein [Escherichia sp. 4_1_40B]
 gi|260842662|ref|YP_003220440.1| multidrug efflux system protein AcrB [Escherichia coli O103:H2 str.
           12009]
 gi|293408610|ref|ZP_06652449.1| multidrug efflux protein [Escherichia coli B354]
 gi|293413716|ref|ZP_06656365.1| acriflavin resistance protein B [Escherichia coli B185]
 gi|293418532|ref|ZP_06660967.1| acriflavin resistance protein B [Escherichia coli B088]
 gi|300818205|ref|ZP_07098416.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 107-1]
 gi|300820292|ref|ZP_07100444.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 119-7]
 gi|300903267|ref|ZP_07121196.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 84-1]
 gi|300918153|ref|ZP_07134761.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 115-1]
 gi|300924190|ref|ZP_07140182.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 182-1]
 gi|300930235|ref|ZP_07145648.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 187-1]
 gi|300947882|ref|ZP_07162032.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 116-1]
 gi|300958031|ref|ZP_07170195.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 175-1]
 gi|301301615|ref|ZP_07207750.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 124-1]
 gi|301330670|ref|ZP_07223272.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 78-1]
 gi|301647390|ref|ZP_07247201.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 146-1]
 gi|307137105|ref|ZP_07496461.1| multidrug efflux system protein AcrB [Escherichia coli H736]
 gi|307312161|ref|ZP_07591797.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli W]
 gi|309794803|ref|ZP_07689224.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 145-7]
 gi|312970560|ref|ZP_07784741.1| acriflavine resistance protein B [Escherichia coli 1827-70]
 gi|331640984|ref|ZP_08342119.1| acriflavine resistance protein B [Escherichia coli H736]
 gi|331651401|ref|ZP_08352426.1| acriflavine resistance protein B [Escherichia coli M718]
 gi|331656519|ref|ZP_08357481.1| acriflavine resistance protein B [Escherichia coli TA206]
 gi|331666820|ref|ZP_08367694.1| acriflavine resistance protein B [Escherichia coli TA271]
 gi|331676135|ref|ZP_08376847.1| acriflavine resistance protein B [Escherichia coli H591]
 gi|331681856|ref|ZP_08382489.1| acriflavine resistance protein B [Escherichia coli H299]
 gi|332281612|ref|ZP_08394025.1| multidrug efflux system protein [Shigella sp. D9]
 gi|399001|sp|P31224|ACRB_ECOLI RecName: Full=Acriflavine resistance protein B
 gi|31615949|pdb|1OY6|A Chain A, Structural Basis Of The Multiple Binding Capacity Of The
           Acrb Multidrug Efflux Pump
 gi|31615950|pdb|1OY8|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
           Acrb Multidrug Efflux Pump
 gi|31615951|pdb|1OY9|A Chain A, Structural Basis Of Multiple Drug Binding Capacity Of The
           Acrb Multidrug Efflux Pump
 gi|31615952|pdb|1OYD|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
           Multidrug Efflux Pump
 gi|31615953|pdb|1OYE|A Chain A, Structural Basis Of Multiple Binding Capacity Of The Acrb
           Multidrug Efflux Pump
 gi|146386527|pdb|2I6W|A Chain A, Crystal Structure Of The Multidrug Efflux Transporter Acrb
 gi|162330120|pdb|2RDD|A Chain A, X-Ray Crystal Structure Of Acrb In Complex With A Novel
           Transmembrane Helix.
 gi|193506820|pdb|3D9B|A Chain A, Symmetric Structure Of E. Coli Acrb
 gi|217035266|pdb|2W1B|A Chain A, The Structure Of The Efflux Pump Acrb In Complex With Bile
           Acid
 gi|290406|gb|AAA23411.1| acriflavine resistance protein [Escherichia coli]
 gi|532311|gb|AAA67135.1| 114 kDa protein [Escherichia coli]
 gi|1773144|gb|AAB40216.1| probable transmembrane protein AcrE [Escherichia coli]
 gi|1786667|gb|AAC73564.1| multidrug efflux system protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|81244366|gb|ABB65074.1| acridine efflux pump [Shigella boydii Sb227]
 gi|85674601|dbj|BAE76241.1| multidrug efflux system protein [Escherichia coli str. K12 substr.
           W3110]
 gi|91071109|gb|ABE05990.1| acridine efflux pump [Escherichia coli UTI89]
 gi|115511844|gb|ABI99918.1| acridine efflux pump [Escherichia coli APEC O1]
 gi|157065668|gb|ABV04923.1| acriflavine resistance protein B [Escherichia coli HS]
 gi|157078985|gb|ABV18693.1| acriflavine resistance protein B [Escherichia coli E24377A]
 gi|169756078|gb|ACA78777.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli ATCC 8739]
 gi|169887882|gb|ACB01589.1| multidrug efflux system protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170517845|gb|ACB16023.1| acriflavine resistance protein B [Escherichia coli SMS-3-5]
 gi|188491591|gb|EDU66694.1| acriflavine resistance protein B [Escherichia coli 53638]
 gi|190902457|gb|EDV62193.1| acriflavine resistance protein B [Escherichia coli B7A]
 gi|192929231|gb|EDV82841.1| acriflavine resistance protein B [Escherichia coli E22]
 gi|192958951|gb|EDV89387.1| acriflavine resistance protein B [Escherichia coli E110019]
 gi|194412970|gb|EDX29260.1| acriflavine resistance protein B [Escherichia coli B171]
 gi|194423655|gb|EDX39645.1| acriflavine resistance protein B [Escherichia coli 101-1]
 gi|209910937|dbj|BAG76011.1| acridine efflux pump protein AcrB [Escherichia coli SE11]
 gi|218350656|emb|CAU96348.1| multidrug efflux system protein [Escherichia coli 55989]
 gi|218364141|emb|CAR01806.1| multidrug efflux system protein [Escherichia coli S88]
 gi|222032256|emb|CAP74995.1| acriflavine resistance protein B [Escherichia coli LF82]
 gi|226898752|gb|EEH85011.1| acriflavine resistance protein B [Escherichia sp. 3_2_53FAA]
 gi|238861810|gb|ACR63808.1| multidrug efflux system protein [Escherichia coli BW2952]
 gi|242376244|emb|CAQ30935.1| AcrB RND-type permease, subunit of AcrAB-TolC multidrug efflux
           transport system [Escherichia coli BL21(DE3)]
 gi|253325592|gb|ACT30194.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253976642|gb|ACT42312.1| multidrug efflux system protein [Escherichia coli BL21(DE3)]
 gi|257757809|dbj|BAI29306.1| multidrug efflux system protein AcrB [Escherichia coli O103:H2 str.
           12009]
 gi|260450352|gb|ACX40774.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli DH1]
 gi|291325060|gb|EFE64475.1| acriflavin resistance protein B [Escherichia coli B088]
 gi|291433774|gb|EFF06747.1| acriflavin resistance protein B [Escherichia coli B185]
 gi|291471788|gb|EFF14271.1| multidrug efflux protein [Escherichia coli B354]
 gi|300315298|gb|EFJ65082.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 175-1]
 gi|300404706|gb|EFJ88244.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 84-1]
 gi|300414663|gb|EFJ97973.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 115-1]
 gi|300419643|gb|EFK02954.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 182-1]
 gi|300452560|gb|EFK16180.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 116-1]
 gi|300461807|gb|EFK25300.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 187-1]
 gi|300527077|gb|EFK48146.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 119-7]
 gi|300529096|gb|EFK50158.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 107-1]
 gi|300843112|gb|EFK70872.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 124-1]
 gi|300843331|gb|EFK71091.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 78-1]
 gi|301074474|gb|EFK89280.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 146-1]
 gi|306907663|gb|EFN38165.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli W]
 gi|307628069|gb|ADN72373.1| multidrug efflux system protein AcrB [Escherichia coli UM146]
 gi|308121456|gb|EFO58718.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 145-7]
 gi|309700722|emb|CBJ00018.1| acriflavin resistance protein B [Escherichia coli ETEC H10407]
 gi|310337209|gb|EFQ02347.1| acriflavine resistance protein B [Escherichia coli 1827-70]
 gi|312945039|gb|ADR25866.1| multidrug efflux system protein AcrB [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315059741|gb|ADT74068.1| multidrug efflux system protein [Escherichia coli W]
 gi|315135143|dbj|BAJ42302.1| multidrug efflux system protein [Escherichia coli DH1]
 gi|315256291|gb|EFU36259.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 85-1]
 gi|315289915|gb|EFU49305.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 110-3]
 gi|315616596|gb|EFU97213.1| inner membrane protein [Escherichia coli 3431]
 gi|320184098|gb|EFW58917.1| RND efflux system, inner membrane transporter CmeB [Shigella
           flexneri CDC 796-83]
 gi|320201706|gb|EFW76282.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli EC4100B]
 gi|323160427|gb|EFZ46375.1| inner membrane protein [Escherichia coli E128010]
 gi|323184707|gb|EFZ70078.1| inner membrane protein [Escherichia coli 1357]
 gi|323379694|gb|ADX51962.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli KO11]
 gi|323938647|gb|EGB34896.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E1520]
 gi|323943267|gb|EGB39423.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E482]
 gi|323945245|gb|EGB41302.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H120]
 gi|323952927|gb|EGB48795.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H252]
 gi|323958655|gb|EGB54358.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H263]
 gi|323963451|gb|EGB59013.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H489]
 gi|324116950|gb|EGC10863.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E1167]
 gi|331037782|gb|EGI10002.1| acriflavine resistance protein B [Escherichia coli H736]
 gi|331051142|gb|EGI23194.1| acriflavine resistance protein B [Escherichia coli M718]
 gi|331054767|gb|EGI26776.1| acriflavine resistance protein B [Escherichia coli TA206]
 gi|331066044|gb|EGI37928.1| acriflavine resistance protein B [Escherichia coli TA271]
 gi|331076193|gb|EGI47475.1| acriflavine resistance protein B [Escherichia coli H591]
 gi|331081058|gb|EGI52223.1| acriflavine resistance protein B [Escherichia coli H299]
 gi|332098506|gb|EGJ03472.1| inner membrane protein [Shigella boydii 3594-74]
 gi|332103964|gb|EGJ07310.1| multidrug efflux system protein [Shigella sp. D9]
 gi|332341828|gb|AEE55162.1| multidrug efflux system protein AcrB [Escherichia coli UMNK88]
          Length = 1049

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|89094741|ref|ZP_01167676.1| protein export protein SecF [Oceanospirillum sp. MED92]
 gi|89080995|gb|EAR60232.1| protein export protein SecF [Oceanospirillum sp. MED92]
          Length = 306

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 87/284 (30%), Positives = 159/284 (55%), Gaps = 5/284 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM  R      S++  + S+  L  +GL +G+DF GG  + +   +P DL+ +R  L+
Sbjct: 7   YNFMGFRKIAAICSVVLLVVSLGSLVVNGLKFGLDFTGGSLVEIGYEQPADLNKIRGQLK 66

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                D   Q F    + L+RL    G         +++            ++  E VG 
Sbjct: 67  GAGYDDAVVQTFGSPTDILIRL----GQDHDPKLGDKVLSALQEGETQQLNLRRNEFVGA 122

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  EL  +G +G++++   +++Y+  RF+  F+LGA+  L  D+   LGFF+L  I+F+
Sbjct: 123 QVGEELREQGGMGMLLALFMIMVYVAFRFQIKFSLGAVAALAHDVLIVLGFFSLLQIDFD 182

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AA+L +IGYS+ND +VV DR+R+N +      +  ++++ S+ +TLGR++ TS+  
Sbjct: 183 LTVLAAILAVIGYSLNDTIVVSDRIRENFRKMRKGTAI-EIMNASLTQTLGRTLVTSLTT 241

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            + ++ +AV+GG +I  FAI +  G++V   SSI+++A +L+ +
Sbjct: 242 LLVLVALAVFGGEMIHGFAIALLVGVLVGTYSSIYVSANVLVAM 285


>gi|218885644|ref|YP_002434965.1| preprotein translocase subunit SecF [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756598|gb|ACL07497.1| protein-export membrane protein SecF [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 361

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 151/343 (44%), Gaps = 47/343 (13%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANR 587
             F  I       F+  R     ISI+  +  +  +   G   YGIDF GG  + V  +R
Sbjct: 1   MGFSFIRHDTNYDFVGMRHKAYVISIVLILVGLLSIVFKGGLTYGIDFAGGAIVQVKFDR 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PV    ++ +LES  +  ++ Q F   +   +       +S    R              
Sbjct: 61  PVADDTLKKSLESASLPGLAVQRFGEGETDYLIRISHSDESAEAIRTAVTGALTANIKDA 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY---------------- 691
              +Q  E+VGPK+  +L  K +  +  + + + IYI  RF+                  
Sbjct: 121 TFEVQRLEMVGPKVGADLKSKAVEALYYAVLLIAIYISGRFERRWMASAVMAGTLAGGMY 180

Query: 692 ------------------------------FALGAITTLILDITKTLGFFALFGIEFNLT 721
                                         FALGAI  L+ D+  T+G  +L   E +L 
Sbjct: 181 LLGLVGVPRLWLVPFSLVLTLVLCWKLRLNFALGAIVALVHDVLITMGVLSLLNKEVDLN 240

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            VAA+LTL+GYS+ND ++VYDR+R+ ++ +    ++  +I+ SIN+TL R++ T     +
Sbjct: 241 IVAAILTLVGYSLNDTIIVYDRIRETLRTHRKEWTYAHIINASINQTLSRTILTGGTTLV 300

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +L + V GG VI  FA+ M  G+ V   SSIF+A+P+LL   
Sbjct: 301 VILALYVLGGGVIHDFALTMLVGVFVGILSSIFVASPVLLHFG 343


>gi|75910042|ref|YP_324338.1| hydrophobe/amphiphile efflux-1 HAE1 protein [Anabaena variabilis
           ATCC 29413]
 gi|75703767|gb|ABA23443.1| Hydrophobe/amphiphile efflux-1 HAE1 [Anabaena variabilis ATCC
           29413]
          Length = 1057

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 85/686 (12%), Positives = 193/686 (28%), Gaps = 43/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   +I  +G +       P    DR+P   P   +          +      
Sbjct: 8   RRPVFTSVCAIIILLVGAISI-----PTLPTDRYPEISPTQIV---------VNANYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++       S      + IT++F  SR K+  A  V   + 
Sbjct: 54  SAEVVENTVTSILERQINGVQGMKYMTSSSSNDGTSTITVTFDPSRDKDIAAVDVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L    ++  +  + +    ++      +Q     +  S    +  +D +   +  
Sbjct: 114 IAQPQLPEAVQRTGVTVSKQSNNILLAMGLYSEQQEYDTVFLSNYADQYIVDALKRLDGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP+RL     T   +       N        G +        Q
Sbjct: 174 GEARIFGERRYAMRLWLDPNRLTSRKLTAQDVIDAINEQNIQVGVGQIGQQPSLPDQMYQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++ +  +S             +  +    +                            
Sbjct: 234 IDLQARGRLS-------------EATEFADMVIKTGTDGTLIKLKDVGRAELGAENYSSF 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +     +      A L     P     V          S +
Sbjct: 281 LRFRGNEGVGIGIFPTPGSNALEVSKAVKAEMARLAQSFPPGLKYQVAFDTTLFVEESLA 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+F+ +   +  L+   +I L +I T A + + G ++   ++ G+
Sbjct: 341 EVVKTLIEALILVVLVIFLFLQDWRTTLIPVITIPLTLIGTFAFIKVFGFSINTLTLFGL 400

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            L  GL VD  I+V E I      +  S   +        +  +  +++  +   V + F
Sbjct: 401 TLATGLVVDDAIIVVENISRLIEEEGMSPRQAASESMRELFGAVIATSLVLMAVFVPVAF 460

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---------IDINP 527
           F    G   + FA+T+  S+ IS F A+++  ++   ++R  +            I+   
Sbjct: 461 FPGTTGQIYKQFALTIAFSMAISTFLALTLTPSLSALLLRRGQRPRGWLGKIFHQINRFL 520

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     + I         +      ++     L         + +G     +    
Sbjct: 521 DWMRRGYERSLNILVKVRAIVVLLFLASIALTGWVYLSVPTAFIPDEDQGYFITIIQGPE 580

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L+   + +  ++   +      G   F +      G+S     +   ++       P
Sbjct: 581 GVSLNYTSNVMAQVEKEILKLPEVTG--TFAIGGFSFSGNSANSGVIFTTLQPWDERQQP 638

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
             +          +   +    I  V
Sbjct: 639 GQSAPEIIGKLAGVFANITEARIFPV 664



 Score = 93.6 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 92/247 (37%), Gaps = 6/247 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L  V       +      +    E   +        +++  ++ ++    ++ +  P 
Sbjct: 262 IKLKDVGRAELGAENYSSFLRFRGNEGVGIGIFPTPGSNALEVSKAVKAEMARLAQSFPP 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                          E + + +  +I + I +++ I++    W   L  + T+ L +  T
Sbjct: 322 GLKYQVAFDTTLFVEESLAEVVKTLIEALILVVLVIFLFLQDWRTTLIPVITIPLTLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             F  +FG   N   +  +    G  V+D ++V + +  +  +    +S R    +S+ E
Sbjct: 382 FAFIKVFGFSINTLTLFGLTLATGLVVDDAIIVVENI--SRLIEEEGMSPRQAASESMRE 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  + TS+      +P+A +    G +   FA+ +AF + ++   ++ +   +   + 
Sbjct: 440 LFGAVIATSLVLMAVFVPVAFFPGTTGQIYKQFALTIAFSMAISTFLALTLTPSLSALLL 499

Query: 825 DWRAKNA 831
               +  
Sbjct: 500 RRGQRPR 506



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 78/207 (37%), Gaps = 11/207 (5%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             S   T  +E + K++                 +       +  V   +  + + + +  
Sbjct: 834  SSGQATTAMEKLAKEVLPASMGYEWSGITAEEQESGG----QAPVIFGLGLVFVFLVLAA 889

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +++ +   L  + ++ L I   L    L G+  ++     ++ LIG +  + +++ +   
Sbjct: 890  QYENYVDPLIIMLSVPLAILGALSAQWLRGLSNDVFCQVGLVMLIGLASKNAILIVEFAN 949

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMA 802
               +L    +       ++  E L   + TS++  + V P+      G +   S    +A
Sbjct: 950  ---QLRERGLPIIKATVQASQERLRPILMTSLSFILGVWPLINPIGAGAASRKSLGTAVA 1006

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++V+   S+F+   + + I   R +
Sbjct: 1007 GGMIVSTVLSLFVVPILYIVISKIRDR 1033


>gi|322807363|emb|CBZ04937.1| protein-export membrane protein SecF (TC 3.A.5.1.1) [Clostridium
           botulinum H04402 065]
          Length = 287

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 148/287 (51%), Gaps = 8/287 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS++  +  +  L   GLNYGIDFKGG  + +   +      V   ++     
Sbjct: 7   KTKIWFSISLIIILTGMFFLMKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ +      N  + ++          ++   +K K         + + + +GP + +E
Sbjct: 67  SVTNKV----NNTQIEIRSNSLTDEEINKLFSDIKSKYNLKDKD--LVSQQRIGPSVGKE 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L RK ++ +II+ IAMLIY+ IRF++ FAL AI  L+ DI  T+  +A+F +  + + +A
Sbjct: 121 LKRKALLALIIADIAMLIYVGIRFEFNFALAAILGLVHDILITISVYAIFKLPVSSSFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           AVLT++GYS+ND +V++DR+R+N K         ++ + SI +T+ RS+ T +    +++
Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DISEIANISITQTMSRSINTVLTTLFTIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + V+    I  FA P+  GI+    SSIFI++P+ +     +  N 
Sbjct: 240 SVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTKLGNK 285


>gi|331645647|ref|ZP_08346750.1| acriflavine resistance protein B [Escherichia coli M605]
 gi|281177632|dbj|BAI53962.1| acridine efflux pump protein AcrB [Escherichia coli SE15]
 gi|330910257|gb|EGH38767.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli AA86]
 gi|331044399|gb|EGI16526.1| acriflavine resistance protein B [Escherichia coli M605]
          Length = 1049

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|320181095|gb|EFW56015.1| RND efflux system, inner membrane transporter CmeB [Shigella boydii
           ATCC 9905]
 gi|332094149|gb|EGI99200.1| inner membrane protein [Shigella boydii 5216-82]
          Length = 1049

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELIEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|94987436|ref|YP_595369.1| acriflavin resistance protein D [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731685|emb|CAJ55048.1| acriflavin resistance protein D [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 1049

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 75/553 (13%), Positives = 161/553 (29%), Gaps = 39/553 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   +  ++   I  IG+L           ++++P+  P               + ++ 
Sbjct: 16  LRRPIFSTVISLFITFIGILAIF-----SLPIEQYPNLTPP-------------QVEIKT 57

Query: 61  DEDDFVNGFL-QMYSDELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKV 115
             +      + +  +  L   +     +   +          +T++F      E     V
Sbjct: 58  TYNGASANTVSESVASVLEEQVNGVDNMSYMNSVSAGTGTMTLTVTFDVGTDPEEATINV 117

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +Q    KL  D ++  +    +    + +            I  S   +   +D + 
Sbjct: 118 NNRVQLATPKLPQDVQRTGISVLKKSPAILQIVFLTSPDERYDTIFLSNYALLNIVDDLK 177

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +     P R+ QL  T   +       N        G   +  
Sbjct: 178 RVPGVGDVQNFAGQDYAIRVWLKPDRMEQLKITPNDVINAINDQNIQIGAGRIGDEPVSS 237

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S G  + +  K  +                 +    I   E             I     
Sbjct: 238 SIGVTWQIITKGRL-------------ETPEQFENIILRTEPDGSILRLKDIARIELGAQ 284

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           V                       +   T E   +    L           +        
Sbjct: 285 VYNFTGRQDGLAAIPIGIFLAPGANALTTAEAVRVKMKELSTQFPVGVAYDIPYDTTTFV 344

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      T      LV +V+++ +   +  L+   ++ ++++ T A + LLG ++   
Sbjct: 345 NIAIKEVVKTLCEAMFLVFLVVYLFLQNWRATLIPCLAVPVSIVGTFAGMHLLGFSINTL 404

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+VL IG+ VD  I+V E +     + Q V  +     S   S I    +      +
Sbjct: 405 TMFGLVLAIGIVVDDAIVVLENVERHISEGQPVHIATAKAMSEVTSAIIAIVLVLCAVFI 464

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F G   G   + FAIT+ +S++IS   A++   A+ I ++R  +  +         +
Sbjct: 465 PVAFIGGLAGRMYQQFAITIAVSVVISGVVALTFTPALCIVLLRNYEPTTSSFFKNFNDW 524

Query: 533 LIPDCIAIQFMRA 545
                     +  
Sbjct: 525 FANITGKYIHIVK 537



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 72/200 (36%), Gaps = 7/200 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                + +  K+++   P+    +            I++ +  +  +   + + +++  +
Sbjct: 312 TTAEAVRVKMKELSTQFPVGVAYDIPYDTTTFVNIAIKEVVKTLCEAMFLVFLVVYLFLQ 371

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + I  T     L G   N   +  ++  IG  V+D +VV + +    
Sbjct: 372 NWRATLIPCLAVPVSIVGTFAGMHLLGFSINTLTMFGLVLAIGIVVDDAIVVLENV---E 428

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +  +          K+++E     +   +      +P+A  GG        FAI +A  +
Sbjct: 429 RHISEGQPVHIATAKAMSEVTSAIIAIVLVLCAVFIPVAFIGGLAGRMYQQFAITIAVSV 488

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++   ++     + + +  
Sbjct: 489 VISGVVALTFTPALCIVLLR 508



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 75/171 (43%), Gaps = 10/171 (5%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            G   +++S I + + +  +++ W   L  +T +       +    L GI  ++    A++
Sbjct: 878  GSFVLLLSLIMVFLILAAQYESWSLPLTILTAVPFAAFGAILAIWLRGIANDVYFQVALI 937

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            TL+G S  + +++ +   +  +L    ++  D I+++        + TS+A  +  +P+A
Sbjct: 938  TLVGLSAKNAILIVEFAVEKYRL--DGMNIIDAIEEASRLRFRPIIMTSLAFILGCVPLA 995

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSS----IFIAAPILLFIYDWRAKNA 831
            +    G +   +    +  G+++A   +     F    I++    + +K +
Sbjct: 996  ISTGAGAASRHAIGTSVIGGMLLATIIAPLFIPFFFRWIMVISEKFSSKKS 1046


>gi|260596861|ref|YP_003209432.1| multidrug efflux system protein AcrB [Cronobacter turicensis z3032]
 gi|260216038|emb|CBA28742.1| Acriflavine resistance protein B [Cronobacter turicensis z3032]
          Length = 1049

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 67/686 (9%), Positives = 174/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++PS  P              +      +
Sbjct: 8   RPIFAWVIAIIIMLAGGLSIM-----KLPVAQYPSIAPPAVT---------INATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDGLMYMSSTSDSSGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + +        D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVLGLINTDGSMKQEDIADYAGANIKDPISRTTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWLDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        R        +           
Sbjct: 233 SIIAQTRLTSAE-------------EFSKILLKVNQDGSRVLLRDVAKVELGGENYDIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T E      A L          +           S   
Sbjct: 280 RYNGQPAAGLGIKLATGANALDTAEAVRKTIAGLEPFFPSGLKVVYPYDTTPFVKISIFE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEGLPPKEATRKSMGQIQGALVGIALVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++++S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMVLSVIVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + +   ++    +   +         + +G         
Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLLIVVAMAFLFIRLPSSFLPEEDQGVFLTMAQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  +    F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEVTNYYLTQEKANVNSVFTVNGFGFSGRGQNTGLAFVSLKNWDERSG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + +            ++    +  
Sbjct: 640 AENKVPAITGRAMARFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 81/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +        L        +++     +      +    P     
Sbjct: 264 DVAKVELGGENYDIIARYNGQPAAGLGIKLATGANALDTAEAVRKTIAGLEPFFPSGLKV 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + + + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIFEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  ++      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 442 LVGIALVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMVLSVIVALILTPAL 492



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L T    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEQLASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 899  FSVMLVVPLGVIGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|217968941|ref|YP_002354175.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Thauera
           sp. MZ1T]
 gi|217506268|gb|ACK53279.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Thauera
           sp. MZ1T]
          Length = 1051

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 68/547 (12%), Positives = 149/547 (27%), Gaps = 34/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        Q  + ++PS  P   +          +       
Sbjct: 8   RPIFAWVIAIVIMLGGALSI-----RQLPVSQYPSIAPPAIV---------INAKYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        +         TL+F+     +    +V   +Q 
Sbjct: 54  AKAVEDSVTQIIEQKLTGLDGLLYMKSTSDAYGNASTTLTFSADTDPDIAQVQVQNKMQT 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +         +++             + S  ++    D +   +   
Sbjct: 114 ALPLLPQAVQQQGVTVAKSAMNFLMVVGFVSADGSMDGTDLSDFLVSSVQDPLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP+RL     T   +    +  N        G        G   
Sbjct: 174 EVQVFGAQ-YAMRVWIDPARLTNYRLTPGDVRTALMAQNTQVSAGQLGGAPAVPGQGFTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I           
Sbjct: 233 TITAQSRL-------------QTVAEFEDILLRSSQQGGEVRLKDVARIEIGAENYGTVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   T          ++         +V          S   
Sbjct: 280 RFNGQPAAGVGIRLASGANALDTATAVRARLDEMKRYFPEGVQYVVPYDTTPFVKISIES 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   +I + ++ T  L++  G ++   ++ G+V
Sbjct: 340 VVMTLIEAVALVFLVMYLFLQNFRATLIPTMAIPVVLLGTFGLMAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +  S +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATKRSMDQITSALVGIGLVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++ +S+  AI    A+   I      K  +      F      
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVLVAIVFTPALCASI-LKPVEKGHEHGEGGLFGRFFHW 518

Query: 538 IAIQFMR 544
             ++F R
Sbjct: 519 FNVKFER 525



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 79/240 (32%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V       +      +        +        +++     +     ++ 
Sbjct: 255 QQGGEVRLKDVARIEIGAENYGTVARFNGQPAAGVGIRLASGANALDTATAVRARLDEMK 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P               +  I   ++ +I +   + + +++  + +   L     + +
Sbjct: 315 RYFPEGVQYVVPYDTTPFVKISIESVVMTLIEAVALVFLVMYLFLQNFRATLIPTMAIPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T G  A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   
Sbjct: 375 VLLGTFGLMAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATK 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+++     V   +      +PMA +GGS       F+I +   + ++   +I     +
Sbjct: 433 RSMDQITSALVGIGLVLSAVFVPMAFFGGSTGVIYRQFSITIVSAMALSVLVAIVFTPAL 492



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 77/267 (28%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V  S   +   +     +   N       L +         
Sbjct: 782  RMTPEDLDKWYVRNKAGDMVPFSAFATAHWTYGSPRLERFNGQPSMELLGQAAPGLSSGE 841

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V E++ K    I    +  + E              +  +  S + + + +   ++
Sbjct: 842  AMQAVEEIMAKLPPGIGYDWSGTSYEERRSGSQAP----ALYAL--SLLVVFLCLAALYE 895

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L +   L   +  G+  ++     +L  IG S  + +++ +  +   
Sbjct: 896  SWSVPFAVMLVVPLGVLGALLAASGRGLSNDVYFQVGLLATIGLSSKNAILIVEFAK--- 952

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                           ++   L   + TS+A    VLP+A+    G     +    +  G 
Sbjct: 953  AQMEEGKDLISATLTAVRMRLRPIIMTSLAFGFGVLPLAIATGAGAGSQNAIGTGVLGGT 1012

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    +F      + I        +
Sbjct: 1013 IGATLLGLFFVPLFYVVIKRIFPDKPK 1039


>gi|194432772|ref|ZP_03065057.1| acriflavine resistance protein B [Shigella dysenteriae 1012]
 gi|194419034|gb|EDX35118.1| acriflavine resistance protein B [Shigella dysenteriae 1012]
 gi|332096991|gb|EGJ01975.1| inner membrane protein [Shigella dysenteriae 155-74]
          Length = 1049

 Score =  201 bits (510), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELIEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|297182390|gb|ADI18555.1| preprotein translocase subunit secd [uncultured gamma
           proteobacterium HF4000_23L14]
          Length = 615

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 166/518 (32%), Positives = 278/518 (53%), Gaps = 34/518 (6%)

Query: 32  LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
           + ++ S +    +SLGLDLRGG H +LEVD +  V+  +  Y +ELR+ L+++ +   S+
Sbjct: 108 VPQWLSNVGGKAMSLGLDLRGGVHFLLEVDMEAVVSMAIDRYYNELRTVLREDRL-YKSI 166

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           R+  N + +SF     K      +   L  +      +    L +  +            
Sbjct: 167 RKEGNLLVVSFKTENLKTEAKKLIKDELSDLMIVGGSETDLQLSLKISSG---------A 217

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
                S A++Q++  +R R++++G++E  IQ+ GS RI++QLPG QD +R +++LG  A 
Sbjct: 218 QSAAKSSALKQNIITLRNRVNELGVAEPIIQQQGSERIVVQLPGVQDTARAKEILGAVAT 277

Query: 212 MSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           + F  V   N  +          G +  +  DG   L++  V ++G ++  A++  D   
Sbjct: 278 VEFRLVDEKNDLQTAVQSGKIPVGSKLYKFRDGRPLLLKTSVIVTGENIVDASSGVDNSN 337

Query: 266 HKPVVDISFDEMGARRFFEV------------------TRDNIGKPLAVVLDGRVLTAPV 307
              V        G                         T    G  +      + +    
Sbjct: 338 SPMVSITLDSAGGRTMLETTKEFLHHRMAVVYIENKVETIVEDGNIVKKRSKTQDIINAA 397

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             Q   S + QI+G  +   A  LA +LRAGSL   + I+EER +G  LG+D+I KG  +
Sbjct: 398 TIQGNFSNRFQITGIDSAREARNLALLLRAGSLSAPIEIIEERTIGPSLGADNIQKGLLS 457

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           ++ G  L++LFM   Y  +GLVA+ ++ LN+++ +++LS+L ATLTLP IAGIVL +G+A
Sbjct: 458 VLVGFALVLLFMGWRYRVFGLVANLALTLNLVIIVSILSMLQATLTLPGIAGIVLTVGMA 517

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ERI+EE + N+++  ++  G+++A  TI D+NIT LIA++VLF FG GAV+G
Sbjct: 518 VDANVLIFERIKEELQLNKNIQKAISGGYAKALLTIADANITTLIASLVLFSFGTGAVKG 577

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FA+T+ + I+ SMFTAI + RA++  I   +K++ + I
Sbjct: 578 FAVTLSIGIITSMFTAIVVSRAVINLIYGGRKVEELAI 615



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 104/254 (40%), Gaps = 4/254 (1%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F       V     V+  V   N+   +       N    +          G   A+   
Sbjct: 360 FLHHRMAVVYIENKVETIVEDGNIVKKRSKTQDIINAATIQGNFSNRFQITGIDSAREAR 419

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
              +  +   +     I     +GP +  + I+KG++ V++    +L+++  R++  F L
Sbjct: 420 NLALLLRAGSLSAPIEIIEERTIGPSLGADNIQKGLLSVLVGFALVLLFMGWRYRV-FGL 478

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A   L L++   +   ++      L  +A ++  +G +V+  V++++R+++ ++L    
Sbjct: 479 VANLALTLNLVIIVSILSMLQATLTLPGIAGIVLTVGMAVDANVLIFERIKEELQLNK-- 536

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + +  I     + L      ++   I+ L +  +G   +  FA+ ++ GI+ +  ++I 
Sbjct: 537 -NIQKAISGGYAKALLTIADANITTLIASLVLFSFGTGAVKGFAVTLSIGIITSMFTAIV 595

Query: 815 IAAPILLFIYDWRA 828
           ++  ++  IY  R 
Sbjct: 596 VSRAVINLIYGGRK 609


>gi|30061962|ref|NP_836133.1| acriflavine resistance protein [Shigella flexneri 2a str. 2457T]
 gi|30040206|gb|AAP15939.1| acriflavine resistance protein [Shigella flexneri 2a str. 2457T]
 gi|281599801|gb|ADA72785.1| Acriflavine resistance protein [Shigella flexneri 2002017]
 gi|313646908|gb|EFS11365.1| acriflavine resistance protein B [Shigella flexneri 2a str. 2457T]
 gi|332761495|gb|EGJ91777.1| inner membrane protein [Shigella flexneri 2747-71]
 gi|332763764|gb|EGJ94002.1| inner membrane protein [Shigella flexneri K-671]
 gi|332768387|gb|EGJ98571.1| acrB RND-type permease [Shigella flexneri 2930-71]
 gi|333021881|gb|EGK41129.1| inner membrane protein [Shigella flexneri K-304]
          Length = 1049

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 179/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           ++           D +         + V   I+    +   +         + +G     
Sbjct: 516 LNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSTPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|161506051|ref|YP_001573163.1| hypothetical protein SARI_04238 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160867398|gb|ABX24021.1| hypothetical protein SARI_04238 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1037

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 74/684 (10%), Positives = 186/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFISDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVISQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPQEFGKVTLRVNTNGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T        A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMQVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     ++  S   + +   S+    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F+IT+  ++ +S+  A+ +  A+   +          KK          
Sbjct: 459 FGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKKSGFFGWFNTK 518

Query: 530 RFFLIPDCIAIQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +           R    + +   ++    ++  L         + +G     +   
Sbjct: 519 FDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEEDQGVFLTMIQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 579 SGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERNG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       +   ++    +
Sbjct: 639 EENSVEAVIARATRAFSQIRDGLV 662



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 95/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +            G + L V  N  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNTNGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T   ++    ++    P               +  I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMQVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++S R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +L G+  ++     +LT IG S  + +++ +  +  M+         +   ++    L 
Sbjct: 915  ASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGRG--LIEATLEASRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G++ A   +I
Sbjct: 973  PILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATLLAI 1018


>gi|58582105|ref|YP_201121.1| preprotein translocase subunit SecD [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624007|ref|YP_451379.1| preprotein translocase subunit SecD [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|58426699|gb|AAW75736.1| protein-export membrane protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367947|dbj|BAE69105.1| protein-export membrane protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 614

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 144/520 (27%), Positives = 253/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  ++VD+   +   L  +++++R+ L+   I
Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I +S  +    +     +               +  L    + + I++
Sbjct: 163 AYRSVERRADNSIQVSLGEGADADAARVTLAK------------AQPTLTYDVSGQNIAV 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L
Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N++     G              G   L+  +  ++G  +  A+ 
Sbjct: 271 IGATASLEFRAVVDGNAEDAVRSGNIPPEAKVYRVRDTGAPVLLNKRALVTGDQMVSASV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
           + D      V     +  G R F                    T   +       +  + 
Sbjct: 331 SNDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P    A   GK   +       A  LA +L++GSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALPATRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRLGVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +        G  + V+    +    +    E   +              +    +Q  
Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALPATRIAGVFGKNFQTT 409

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         K   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F       L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++L    +  +  I     +  G  +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 529 ELRL---GVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I ++  + + IY  R K   +
Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612



 Score = 41.2 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 30/121 (24%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +    W   L  ++  +  L ALPN   +                          +    
Sbjct: 2   LEFPRWKYFLILLVLAVSALYALPNIYQKDPS---------------------VQITASR 40

Query: 60  -VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
               DD +   +        + LK  GI   ++ +  + + +     + +    D +   
Sbjct: 41  GAQLDDALRSRID-------ADLKAAGITPKAVTKEGDSLMVRLPSLQAQTRANDVLRQQ 93

Query: 119 L 119
           L
Sbjct: 94  L 94


>gi|218553028|ref|YP_002385941.1| multidrug efflux system protein [Escherichia coli IAI1]
 gi|218359796|emb|CAQ97337.1| multidrug efflux system protein [Escherichia coli IAI1]
          Length = 1049

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 179/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I   +   
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGVENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 83/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V      ++  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGVENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|26246475|ref|NP_752514.1| acriflavin resistance protein B [Escherichia coli CFT073]
 gi|215485542|ref|YP_002327973.1| multidrug efflux system protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218688325|ref|YP_002396537.1| multidrug efflux system protein [Escherichia coli ED1a]
 gi|218703745|ref|YP_002411264.1| multidrug efflux system protein [Escherichia coli UMN026]
 gi|227884526|ref|ZP_04002331.1| acridine efflux pump [Escherichia coli 83972]
 gi|293403582|ref|ZP_06647673.1| multidrug efflux protein [Escherichia coli FVEC1412]
 gi|298379192|ref|ZP_06989073.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           FVEC1302]
 gi|300900536|ref|ZP_07118703.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 198-1]
 gi|300935760|ref|ZP_07150725.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 21-1]
 gi|300987937|ref|ZP_07178453.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 45-1]
 gi|301049671|ref|ZP_07196619.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 185-1]
 gi|306813071|ref|ZP_07447264.1| multidrug efflux system protein [Escherichia coli NC101]
 gi|312964473|ref|ZP_07778767.1| inner membrane protein [Escherichia coli 2362-75]
 gi|331661843|ref|ZP_08362766.1| acriflavine resistance protein B [Escherichia coli TA143]
 gi|331672005|ref|ZP_08372801.1| acriflavine resistance protein B [Escherichia coli TA280]
 gi|26106873|gb|AAN79058.1|AE016756_241 Acriflavine resistance protein B [Escherichia coli CFT073]
 gi|215263614|emb|CAS07945.1| multidrug efflux system protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|218425889|emb|CAR06695.1| multidrug efflux system protein [Escherichia coli ED1a]
 gi|218430842|emb|CAR11716.1| multidrug efflux system protein [Escherichia coli UMN026]
 gi|227838612|gb|EEJ49078.1| acridine efflux pump [Escherichia coli 83972]
 gi|291429435|gb|EFF02455.1| multidrug efflux protein [Escherichia coli FVEC1412]
 gi|298280305|gb|EFI21809.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           FVEC1302]
 gi|300298564|gb|EFJ54949.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 185-1]
 gi|300356017|gb|EFJ71887.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 198-1]
 gi|300407607|gb|EFJ91145.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 45-1]
 gi|300459060|gb|EFK22553.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 21-1]
 gi|305853834|gb|EFM54273.1| multidrug efflux system protein [Escherichia coli NC101]
 gi|307552368|gb|ADN45143.1| acridine efflux pump [Escherichia coli ABU 83972]
 gi|312290950|gb|EFR18826.1| inner membrane protein [Escherichia coli 2362-75]
 gi|315294246|gb|EFU53597.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 153-1]
 gi|315299539|gb|EFU58787.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 16-3]
 gi|320197062|gb|EFW71681.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli WV_060327]
 gi|323191128|gb|EFZ76392.1| inner membrane protein [Escherichia coli RN587/1]
 gi|324010043|gb|EGB79262.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 57-2]
 gi|331060265|gb|EGI32229.1| acriflavine resistance protein B [Escherichia coli TA143]
 gi|331070994|gb|EGI42353.1| acriflavine resistance protein B [Escherichia coli TA280]
          Length = 1049

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|325141837|gb|EGC64282.1| protein-export membrane protein SecF [Neisseria meningitidis
           961-5945]
          Length = 311

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 168/303 (55%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   +  D
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTRGLNFSVEFTGGTVMEVQYQQGAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R  L++L+IGD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKMRERLDTLKIGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKDSPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +   AI ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVSNGLMALGFVAIGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +       +  ++ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPAMRGHAVPEVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R  
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRDN 298

Query: 830 NAR 832
            A+
Sbjct: 299 IAK 301


>gi|300717144|ref|YP_003741947.1| Acriflavine resistance protein B [Erwinia billingiae Eb661]
 gi|299062980|emb|CAX60100.1| Acriflavine resistance protein B [Erwinia billingiae Eb661]
          Length = 1043

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 73/685 (10%), Positives = 189/685 (27%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +  L     +  ++++P   P                     +
Sbjct: 8   RPIFAWVLAIIVMLAGGISIL-----KLPVEQYPDVAPTAVQ---------VRATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  S L        +       ++TLSF +    +    +V   LQ 
Sbjct: 54  ATTLQNSVTQVIEQNMSGLDGLMYMSSTSDSSGTLQLTLSFQNGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +       +  ++     D       + +  +     D I       
Sbjct: 114 ATPLLPQEVQQQGITVRKSSSVFFLVPGFVDDSGKMSMEDIADYVAANLKDPISRINGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DTTRFGSQ-YAMRVWLDPNKLNNYQLTPVDVINMIETQNAQVAAGQLGGAPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        I +         
Sbjct: 233 SIIAQTRLT-------------SPEEFGNILLKVNSDGSQVRLHDVSRIERGGENYNFVV 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +          +   T +        L+         +           S   
Sbjct: 280 KINGKPASALGIQLATGANALDTAKAIRAQIDELKPYFPQGLRVVYPYDTTPFISISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L++ G ++   ++ G+V
Sbjct: 340 VVKTLLEAIVLVFLVMYLFLQSFRATLIPTIAVPVVLLGTFGILNVFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMAEEGLKPKAATRKSMEQIQGALVGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++ +S+  A+ +  A+ + I           +       +   
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVLVALILTPALCVTILKPVKPGTHGQQRGLFGWFNRKF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A    R+  + V  +++ +  ++  +         + +G +    L   
Sbjct: 520 DQSTDHYTHSVARMLQRSGRYLVIYAVIVAGMAVLFVRLPTSFLPSEDQGVLATQALLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  ++ L+ +    +S +  + E    V      G           +K        
Sbjct: 580 GATQERTQAVLDQVNDYYLSDEKNNVENVLTVNGFGFAGRGQNVGIAFIGLKDWSQRGGD 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            + +        K   +++   +V 
Sbjct: 640 ENKVDGIVSRAAKTFSKIMDGNVVA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 84/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +      + L        +++   + +     ++    
Sbjct: 258 SQVRLHDVSRIERGGENYNFVVKINGKPASALGIQLATGANALDTAKAIRAQIDELKPYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P                  I + +  ++ + + + + +++    +   L     + + + 
Sbjct: 318 PQGLRVVYPYDTTPFISISIHEVVKTLLEAIVLVFLVMYLFLQSFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G   +FG   N   +  ++  IG  V+D +VV + +     +    +  +    KS+
Sbjct: 378 GTFGILNVFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERIMAEEGLKPKAATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GGS       F+I +   + ++   ++ +   + + 
Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCVT 495

Query: 823 IYD 825
           I  
Sbjct: 496 ILK 498



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/192 (15%), Positives = 68/192 (35%), Gaps = 7/192 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G         E +         L +    +  G      +       +  IS I + + +
Sbjct: 828  GQPAEGKSSGEAMALMQQLAGQLPSGIGYDWTGMSYQERMSGDQAPALYAISLIVVFLCL 887

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L    L G+  ++  V  +LT IG +  + +++ + 
Sbjct: 888  AALYESWAIPFSVMLVVPLGVFGALVATLLRGLNNDVYFVVGLLTTIGLAAKNAILIVEF 947

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             R  +++        +   ++    L   + TS+A  + VLP+A+    G     +    
Sbjct: 948  ARDQIEIEGKG--VVEATLEAARMRLRPILMTSLAFILGVLPLALSSGAGSGAQNAVGTG 1005

Query: 801  MAFGIVVAASSS 812
            +  G+V A   +
Sbjct: 1006 VIGGMVAATLLA 1017


>gi|284920271|emb|CBG33330.1| acriflavin resistance protein B [Escherichia coli 042]
          Length = 1049

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGEHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQRVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|332760755|gb|EGJ91043.1| inner membrane protein [Shigella flexneri 4343-70]
 gi|333008083|gb|EGK27559.1| inner membrane protein [Shigella flexneri K-218]
          Length = 1049

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 179/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           ++           D +         + V   I+    +   +         + +G     
Sbjct: 516 LNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSTPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|90419075|ref|ZP_01226986.1| efflux protein [Aurantimonas manganoxydans SI85-9A1]
 gi|90337155|gb|EAS50860.1| efflux protein [Aurantimonas manganoxydans SI85-9A1]
          Length = 1054

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 76/685 (11%), Positives = 178/685 (25%), Gaps = 46/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL           ++++P  +P               + +    
Sbjct: 9   RPIFAAVISILITLGGLLSI-----SALPIEQYPQLVPP-------------QVQVRASY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   +       IT++FA     +     V  
Sbjct: 51  PGASAETIAQTVSAPIEQQINGVEDMLYMQSTNSSTGTATITVTFASGTDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q  N+ L    ++  +    +    + +   + +     A   S   +   +D++   
Sbjct: 111 RVQQANASLPEQVQRLGVTVAKQNSSILAVLTMSSEDPRYDATYVSNYALLNVLDELKRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P  L     T   ++      N       FG        
Sbjct: 171 PGIGEAQLFGARNYSMRIWLRPDALASYGLTPGDVATAVRDQNAQFAAGQFGAPPTNTDL 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V     +             P        I   +             +       
Sbjct: 231 AFTYSVTTAGRL-------------PDAEAFENIILRSDENGSSLLLKDVARVELGAQDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +   T+         L           +          
Sbjct: 278 GFNATYNGTPTVPIGIYLQPGANALDTLSGVRTRMEELSGSFPDGISFAIPYDTTKFIEA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ +++I T  +L  LG ++ L ++
Sbjct: 338 SIEEVIMTFIEAMALVFVVVFIFLQSFRATLIPMLAVPVSIIGTFGVLLALGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  +   +     +     +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEGLNAKDATAKAMTEVAGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINP 527
           + F G   G   R FA+T+ +S++IS   A+++  A+   +        +   +  +   
Sbjct: 458 VAFLGGLAGTMYRQFAVTIAVSVVISGIVALTLTPALCGLLLKQGHSEPWAPFRWFNTGF 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A    RA    V  + +            G     + +G      +   
Sbjct: 518 DKLTNAYGAGVAFIMRRAVVALVLFAGIVGGSYYFFQTIPGSLVPDEDQGVNFAIAILPP 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L+     +E +               F            +       +K       P
Sbjct: 578 AASLARTTEVMEQVSANVREHPAVADVVAFAGFDLLAGTQKSSSGVAFVTLKDWSEREDP 637

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
               +N       ++  +    ++ 
Sbjct: 638 SLDARNLTGPIMGMNAGIQDGMVLA 662



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 77/188 (40%), Gaps = 8/188 (4%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           +E +     + +  +   +T         E+I   I  + +  + + I++     +   L
Sbjct: 312 MEELSGSFPDGISFAIPYDTTKFIEASIEEVIMTFIEAMALVFVVVFIFLQ---SFRATL 368

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             +  + + I  T G     G   NL  +  ++  IG  V+D +VV + +     + T  
Sbjct: 369 IPMLAVPVSIIGTFGVLLALGFSINLLTLFGLVLAIGIVVDDAIVVLENV--ERIMTTEG 426

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASS 811
           ++ +D   K++ E  G  +   +      +P+A  G   G++   FA+ +A  +V++   
Sbjct: 427 LNAKDATAKAMTEVAGPVIAIVLVLCAVFIPVAFLGGLAGTMYRQFAVTIAVSVVISGIV 486

Query: 812 SIFIAAPI 819
           ++ +   +
Sbjct: 487 ALTLTPAL 494



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 64/168 (38%), Gaps = 7/168 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G+  +    + + + +  ++ +W   +  +  +   +   L    L G++ ++     +
Sbjct: 869  TGLAAIGFGILMVFLILSAQYERWSLPIAVLLAVPFAMFGALLAIWLRGLDNDVYFQIGL 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TL+G +  + +++ +     +      +S  D   +         V TS+A  + V+P+
Sbjct: 929  VTLVGLAAKNAILIVEFA---VLKREEGLSAFDAALQGAKLRFRPIVMTSLAFILGVVPL 985

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A+    G +   S    +  G++ A   +IF        +   +    
Sbjct: 986  AISTGAGSASRHSIGTGVIGGMLAATFVAIFFIPLFYKLLARKQPSRG 1033


>gi|45442442|ref|NP_993981.1| aminoglycoside/multidrug efflux system [Yersinia pestis biovar
           Microtus str. 91001]
 gi|162421005|ref|YP_001607186.1| aminoglycoside/multidrug efflux system [Yersinia pestis Angola]
 gi|45437307|gb|AAS62858.1| multidrug efflux protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|162353820|gb|ABX87768.1| acriflavine resistance protein D [Yersinia pestis Angola]
          Length = 1085

 Score =  201 bits (510), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 69/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 50  RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 91

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       +TL+F           +V  
Sbjct: 92  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASVTLTFQAGTNPNEAMQQVQN 151

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  D ++  +  +   + ++++             + S  +     D +   
Sbjct: 152 QLQSAIKRLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDISDYVASNLQDPLSRI 211

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT+ +       N        G     D+ 
Sbjct: 212 EGVGSVDAFGSQ-YAMRIWLDPNKLTNYQLTTSDIVSAIQSQNTQVAVGQLGGTPAVDNQ 270

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 271 ALNATINAQSQL-------------QTPEEFREITLRVNQDGSLVTLGDVAKIELGSEKY 317

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +      A L           +          
Sbjct: 318 DYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPHGLEAKIAYETTPFVQA 377

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 378 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGTFAVLSAFGFSINTLTM 437

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 438 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALIGIALVLSAVFIP 497

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  AM   +     +K I          
Sbjct: 498 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATL-----LKPIAPGHHHAKRG 552

Query: 534 IPDCIAIQFMRARFWG 549
                   F R     
Sbjct: 553 FFGWFNRMFDRNSHRY 568



 Score = 84.7 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +   + ++    ++    P 
Sbjct: 302 VTLGDVAKIELGSEKYDYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPH 361

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 362 GLEAKIAYETTPFVQASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGT 421

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ +
Sbjct: 422 FAVLSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 479

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 480 IQGALIGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATLL 539

Query: 825 D 825
            
Sbjct: 540 K 540



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 895  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 954

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++  + L
Sbjct: 955  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNNRGKDLVEATLEASRQRL 1011

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 1012 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1071


>gi|52425619|ref|YP_088756.1| preprotein translocase subunit SecF [Mannheimia succiniciproducens
           MBEL55E]
 gi|52307671|gb|AAU38171.1| SecF protein [Mannheimia succiniciproducens MBEL55E]
          Length = 322

 Score =  201 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 153/301 (50%), Gaps = 5/301 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                +      + FM+ R +G   SI+    S+  +FT G N+G+DF GG+ +    ++
Sbjct: 11  HEYKGIGLPFSLVHFMKYRKFGYLFSIIVIALSLFSIFTKGFNWGLDFTGGVIIDTHFSQ 70

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  VRS L++  I     Q      +  +RL     D+     +       +T +  
Sbjct: 71  PADLEQVRSTLKTGGIESALVQTTGSANDVAIRLPASASDANIGNNIKN----MMTSLDK 126

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I++ E VGP +  EL +  I   + + I +L Y+ +RF+W   LG I  L  D+  T
Sbjct: 127 DIQIRSVEFVGPNVGEELTQGAIYATLATLILLLAYVGMRFEWRLGLGGILGLAHDVIVT 186

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G F+   IE +LT VAA+LT++GYS+ND +VV+DR+R+N +     +S  ++I+ S+ +
Sbjct: 187 IGLFSFLQIEIDLTFVAAILTVVGYSLNDSIVVFDRVRENFRKI-RRLSSEEVINISLTQ 245

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS+     V  +  +GG  I SF++ +  GI     SSIF+A  +       R
Sbjct: 246 TLSRTLMTSVTTLFVVFSLLFFGGPSIYSFSLALLIGIGFGTYSSIFVAIALAFDFGLDR 305

Query: 828 A 828
            
Sbjct: 306 E 306


>gi|88799561|ref|ZP_01115137.1| protein-export membrane protein SecF [Reinekea sp. MED297]
 gi|88777646|gb|EAR08845.1| protein-export membrane protein SecF [Reinekea sp. MED297]
          Length = 315

 Score =  201 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 97/284 (34%), Positives = 161/284 (56%), Gaps = 5/284 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM  R   V  S++  + S+  L   GLN+G+DF GG Q+ +   +P D+  +RS L+
Sbjct: 7   FDFMGKRRLAVAFSVILLLVSVVSLGVRGLNFGLDFTGGAQIELGFQQPADVEAIRSQLQ 66

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                D+  Q F    + L+R+Q    +        E++            ++  E VGP
Sbjct: 67  DAGYRDVDVQYFGTNTDVLIRMQ----EDNNPQLGEEVIALVQETRDDEIQLRRNEYVGP 122

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  EL   G +G++++   ++IYI  RF++ FA+GA+  L  D+   LGFF+L  + F+
Sbjct: 123 QVGEELANNGGIGMLVALALVMIYIAFRFQFKFAVGAVAALAHDVIIVLGFFSLTQMAFD 182

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AAVL +IGYS+ND +VV DR+R++ +          LI+ S+ +TLGR++ TS+  
Sbjct: 183 LTVLAAVLAVIGYSLNDTIVVSDRIRESFRTI-RRDDTEYLINISLTQTLGRTIITSLTT 241

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            + +L +AV+GG +I SFAI +  G+ +   SSI++AA IL+ +
Sbjct: 242 LLVLLALAVFGGELIFSFAIALIVGVAIGTYSSIYVAANILMLM 285


>gi|324016738|gb|EGB85957.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 117-3]
          Length = 1049

 Score =  201 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|225692171|gb|ACO06752.1| EmhB [Pseudomonas fluorescens]
          Length = 1054

 Score =  201 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 68/692 (9%), Positives = 182/692 (26%), Gaps = 44/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      +++             + S  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKSVRNFLMVIGVVSRDGSMTREDLSNYIVSNMQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNNFNLTPVDVSTAISAQNVQIASGQLGGLPAMPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++           
Sbjct: 233 TIIGKTRL-------------QTAEQFKAILLKVNPDGSQVRVGDVADVALGGENYSINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L+         +           S   
Sbjct: 280 QFNGAPASGLAVRLATGANALDTAKALRKTVDDLKPFFPQGLEVVFPYDTTPVVSESIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVETLVEAVALVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      + F+IT+  ++ +S+  A+    A+   +            +       +  
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVMVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRT 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +         + +   I+                  + +G +   V   
Sbjct: 520 FDRGVRSYERGVGNMLKHKAPYLLAYIIIVVGMVWLFTRIPTAFLPEEDQGVLFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++ ++   +      GE + +  +    G + A       +   + +  
Sbjct: 580 AGSSAERTQVVVDKMREFLLRPGKDGGEGDGVASVFTVTGFNFAGRGQSSGLAFIMLKPW 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 N+       +++        ++ +  
Sbjct: 640 EERNADNSVFKIAGRAQQHFFTFRDAMVFAFA 671



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +   I+ Q      + L        +++   + L      +    
Sbjct: 258 SQVRVGDVADVALGGENYSINAQFNGAPASGLAVRLATGANALDTAKALRKTVDDLKPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I+  +  ++ +   + + +++  + +   +    T+ + + 
Sbjct: 318 PQGLEVVFPYDTTPVVSESIKGVVETLVEAVALVFLVMFLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVMVALIFTPAL 492



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             +S + + + +   ++ W   +  +  + L I   L   +L G+  ++     +LT IG 
Sbjct: 881  ALSLLMVFLCLAALYESWSIPIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGL 940

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +  ++   L+    +  +   ++    L   + TS+A  + V+P+A+    
Sbjct: 941  AAKNAILIVEFAKE---LHEQGRTLVEAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGA 997

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G     +    +  G++ A   +IF      + +     +  
Sbjct: 998  GSGSQHAIGTGVIGGMLTATILAIFWVPLFFVTVSSIGRRKN 1039


>gi|16272200|ref|NP_438410.1| preprotein translocase subunit SecD [Haemophilus influenzae Rd
           KW20]
 gi|148827379|ref|YP_001292132.1| preprotein translocase subunit SecD [Haemophilus influenzae PittGG]
 gi|260580876|ref|ZP_05848701.1| protein-export membrane protein SecD [Haemophilus influenzae RdAW]
 gi|1173414|sp|P44591|SECD_HAEIN RecName: Full=Protein-export membrane protein secD
 gi|1573205|gb|AAC21908.1| protein-export membrane protein (secD) [Haemophilus influenzae Rd
           KW20]
 gi|148718621|gb|ABQ99748.1| protein export protein SecD [Haemophilus influenzae PittGG]
 gi|260092499|gb|EEW76437.1| protein-export membrane protein SecD [Haemophilus influenzae RdAW]
          Length = 616

 Score =  201 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 148/516 (28%), Positives = 270/516 (52%), Gaps = 36/516 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + S    N +  GLDLRGG   ++EVD +  +    +   D LR  L+KE I   +++
Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNATLVKRQEQLQDSLRGELRKEKIQYTAIK 169

Query: 93  QIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
             +     ++ A+   +      +                   +       I++ LS   
Sbjct: 170 NTEHFGTLITLANVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAA 218

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           +++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA 
Sbjct: 219 LNEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATAT 278

Query: 212 MSFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  N +                 D  G+   +  +  + G H+  +++  D  + 
Sbjct: 279 LEFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSS 338

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
            P V ++ D  G     + T+    KP+A +                             
Sbjct: 339 TPQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVAT 398

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q       QI+G  +I  A  L+ +L++G+L   + IVEER +G  LG+ ++ +G  A 
Sbjct: 399 IQGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINAS 458

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GLV ++ FM+  Y  +G++A F++ +N++L + L+S+L  ATL++P IAGIVL +G++
Sbjct: 459 LWGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMS 518

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ERI+EE R  +S+  +++ G++ A+++IFD+N+T ++  ++L+  G G ++G
Sbjct: 519 VDANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQG 578

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           FAIT+ L + ISMFTAI+  RA++  +   K++K +
Sbjct: 579 FAITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 614



 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +GI   +   +A++ ++   +K  F + A   L+++I   +G  ++  
Sbjct: 441 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 499

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G SV+  V++++R+++ ++      S +  I++  N        
Sbjct: 500 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 556

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   I  FAI ++ G+ ++  ++I     ++  +Y  +    
Sbjct: 557 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 613



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 26/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   I  IG+L +LPN   +    +                  G+       
Sbjct: 4   RYPLWKNLMVIFIVAIGILYSLPNIYGEDPAVQI----------------SGTR------ 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             +     L    D L++      +   S+      I   F ++  +    DK+   L
Sbjct: 42  GQEANTSVLGQVQDVLKT----NNLPTKSIVLENGSILARFTNTDDQLLAKDKIAERL 95


>gi|110640723|ref|YP_668451.1| acriflavine resistance protein B [Escherichia coli 536]
 gi|191173694|ref|ZP_03035218.1| acriflavine resistance protein B [Escherichia coli F11]
 gi|300997174|ref|ZP_07181670.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 200-1]
 gi|110342315|gb|ABG68552.1| acriflavine resistance protein B [Escherichia coli 536]
 gi|190906052|gb|EDV65667.1| acriflavine resistance protein B [Escherichia coli F11]
 gi|222355827|gb|ACM48571.1| acriflavine resistance protein B [Escherichia coli]
 gi|300304309|gb|EFJ58829.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 200-1]
 gi|324010633|gb|EGB79852.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 60-1]
          Length = 1049

 Score =  201 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTNYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKNWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|237732455|ref|ZP_04562936.1| aminoglycoside/multidrug efflux system [Citrobacter sp. 30_2]
 gi|226907994|gb|EEH93912.1| aminoglycoside/multidrug efflux system [Citrobacter sp. 30_2]
          Length = 1037

 Score =  201 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATVTLSFVAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPDEFRAITLRVNQDGSEVKLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T          L           V          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATATLVINRLNELSQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEHHGQTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L        ++ +G     V
Sbjct: 516 NRMFNRNAERYEKGVARILHRSLRWILIYGLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEEVEKYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    +  
Sbjct: 636 RDTTTGTSFAIIERATKAFNKIKEARVFA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++++  P 
Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATATLVINRLNELSQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 64/186 (34%), Gaps = 8/186 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E         L       +  IS + + + +   ++ W      +  + L +   L 
Sbjct: 853  FGLEWTAMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALL 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   +        D    +  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNEKGHDLLDATLHACRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPM +    G     +    +  G++ A   +I+      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMTISSGAGSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRR 1029

Query: 827  RAKNAR 832
                 R
Sbjct: 1030 FPLKPR 1035


>gi|300921397|ref|ZP_07137758.1| putative ATP synthase F0, A subunit [Escherichia coli MS 115-1]
 gi|300411709|gb|EFJ95019.1| putative ATP synthase F0, A subunit [Escherichia coli MS 115-1]
 gi|323159317|gb|EFZ45302.1| inner membrane domain protein [Escherichia coli E128010]
          Length = 666

 Score =  201 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNKIKEARVIA 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502


>gi|119476394|ref|ZP_01616745.1| protein-export membrane protein SecD [marine gamma proteobacterium
           HTCC2143]
 gi|119450258|gb|EAW31493.1| protein-export membrane protein SecD [marine gamma proteobacterium
           HTCC2143]
          Length = 622

 Score =  201 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 165/537 (30%), Positives = 276/537 (51%), Gaps = 42/537 (7%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + L    PN+L                + LGLDL GG H +LEVD +  +   ++ Y
Sbjct: 103 IVALNLASTTPNWLAD---------FGAQGMKLGLDLSGGVHFLLEVDTNSAIAKRMEFY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           +  ++  L+++ I  F   +    I   F     +E    KV             +  + 
Sbjct: 154 TSGIKKSLREDKIRGFIRLEEDGSIRGKFKTEELREQANSKVRTEFS--------ELVRQ 205

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +    +  + + +S+  I ++ ++A++Q++  +R R++++G+SE  +QR G +RI+++L
Sbjct: 206 SVDDDGDFYLYMTISEAKIKEIENYAVDQNLTTLRNRVNELGVSEPLVQRQGRNRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-DSDGNQYLVEDKVEISGI 252
           PG QD +R ++++G TA M F      ++         F      G    +E  + I+G 
Sbjct: 266 PGVQDTTRAKRIIGKTANMEFRLEAKYDALASAKEEFEFREAGRRGGSAFLERDIVITGE 325

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP------------------- 293
            +  A+A FD +T +P V+I+ D  G      VTR NI +                    
Sbjct: 326 RVASASAGFDSQTSQPQVNITLDSEGGAMMHRVTRHNIKRGLGVLFIERKSRTRYETNAA 385

Query: 294 -----LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                + V  D + + +    Q       +I+G      A  LA +LRAG+L   L  V+
Sbjct: 386 GEEVVIKVPYDEKRIISLATIQDALGVSFRITGLGNPAEAAELALLLRAGALAAPLEFVQ 445

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG+++I  G  ++  GL L+ +FM+V Y  +G+VA   + +N++L +A +S+L
Sbjct: 446 ERTIGPSLGAENIELGIMSVQIGLALVAVFMMVYYRLFGVVAMLGLSINLVLLIAAMSIL 505

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ATLTLP IAGIVL +G+AVD+N+L+  RIREE R   S   +++ G+ RA+ TI D+NI
Sbjct: 506 SATLTLPGIAGIVLTVGMAVDANVLIFARIREELRAGLSPQQAINAGYDRAFVTIMDANI 565

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T L+  ++L+  G G VRGFA+T+ L I+ SMFTAI   RA++  I   +K++ + I
Sbjct: 566 TTLLVALILYAVGAGPVRGFAVTLSLGIITSMFTAIVGTRALINMIHGGRKIQKLSI 622



 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 100/280 (35%), Gaps = 5/280 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           +I        ++     +      G + +   +    + +     +      D       
Sbjct: 344 NITLDSEGGAMMHRVTRHNIKRGLGVLFIERKSRTRYETNAAGEEVVIKVPYDEKRIISL 403

Query: 613 GEKNFLVRLQYQPGD-SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 + + ++              +  +   +           +GP +  E I  GI+
Sbjct: 404 ATIQDALGVSFRITGLGNPAEAAELALLLRAGALAAPLEFVQERTIGPSLGAENIELGIM 463

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V I    + +++ + ++  F + A+  L +++   +   ++      L  +A ++  +G
Sbjct: 464 SVQIGLALVAVFMMVYYRL-FGVVAMLGLSINLVLLIAAMSILSATLTLPGIAGIVLTVG 522

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +V+  V+++ R+R+ ++     +S +  I+   +      +  ++   +  L +   G 
Sbjct: 523 MAVDANVLIFARIREELRA---GLSPQQAINAGYDRAFVTIMDANITTLLVALILYAVGA 579

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  FA+ ++ GI+ +  ++I     ++  I+  R    
Sbjct: 580 GPVRGFAVTLSLGIITSMFTAIVGTRALINMIHGGRKIQK 619



 Score = 41.2 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 8/43 (18%), Positives = 13/43 (30%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI 44
          +   W  IL  ++  +G   A PN        +         I
Sbjct: 4  QYPLWKYILILLVVVVGFFYAAPNLYSPDPAVQLSGESSATVI 46


>gi|315924145|ref|ZP_07920371.1| protein-export membrane protein SecDF [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622547|gb|EFV02502.1| protein-export membrane protein SecDF [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 330

 Score =  201 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 137/307 (44%), Gaps = 5/307 (1%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                          + F+      + IS++  I ++  L   GLN+GIDF GG  + V 
Sbjct: 3   FKEAVMAKEQKQKRILPFIEHTKIWLSISLILVIIAVGALGVRGLNFGIDFAGGTTVTVN 62

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            ++      +RS  +     D +             +           +   +   +   
Sbjct: 63  LHQAFKTEDIRSITK---TFDKNADITYSGNAKQSAVISTKVSLNNLQQKKLLGDFQKRY 119

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                   + + +   + RE  R  I+  + +   +L+Y+ IRF+++F L ++  L  DI
Sbjct: 120 PKVQQKDVSVDRITASVGRETTRNTILASLAAIALILVYVTIRFEFFFGLASVIALFHDI 179

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLID 762
              +G +ALF I+ N   +AA+LT++GYS+ND +VV+DR+R+N              L+D
Sbjct: 180 IVVIGVYALFQIQVNSPFIAAILTILGYSINDTIVVFDRIRENENEMGMANIAEMTKLVD 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SI +TL RS+ T     ++++ + ++    I +FA+P+  GI     SSIF+A+P+ + 
Sbjct: 240 ASITQTLKRSINTVATTLVAIIALYIFAVDAIRNFAMPLIVGIACGCYSSIFVASPLWVI 299

Query: 823 IYDWRAK 829
                 K
Sbjct: 300 FQKHAKK 306


>gi|225851088|ref|YP_002731322.1| protein-export membrane protein SecD [Persephonella marina EX-H1]
 gi|225646333|gb|ACO04519.1| protein-export membrane protein SecD [Persephonella marina EX-H1]
          Length = 512

 Score =  201 bits (509), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 168/537 (31%), Positives = 263/537 (48%), Gaps = 46/537 (8%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
              +++   I    L                        I LGLDL+GG  +VLEVD D 
Sbjct: 6   KLKLVVVFAILVASLYFIF-----------------TKPIKLGLDLQGGMSIVLEVDVDH 48

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            +N   +    ++   LK  GI V S + +  K  +S  D          +      V  
Sbjct: 49  VINTQYKQLVRDIEKKLKDNGIEVLSGKVVNGKAVVSLLDPTTVNRALKIIKDEFPQVK- 107

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                      V T    + + L    +D++    ++Q++E +R RID+ G     I ++
Sbjct: 108 -----------VETENGNLVVQLLPWELDRIKKMTVQQAVETLRNRIDEFGTLNPNIAKM 156

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
           G  RIL++LPG  DP R + ++G TA++   +V+     K  +         +G + L  
Sbjct: 157 GERRILVELPGVVDPERAKSIIGKTAQLELLEVVDTAFSKEELLKKYPDGLPEGTKILEG 216

Query: 245 DKVEISGIHLNGA----------------TANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
            +  I+G  +                         ++ KP V+      GA  F E T  
Sbjct: 217 PEEHINGQTVKEWFLVKDTPIVTGSMLKDARTTIDQSGKPAVNFELTSEGAEIFGEATAK 276

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
            IGK LA+VLD +V++APV+     S   QI+GNFT E A  LA +LRAG+LP  ++I+E
Sbjct: 277 MIGKRLAIVLDNKVISAPVVRS-RISSAGQITGNFTPEEAADLAIVLRAGALPAPVHILE 335

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER +G  LG DSI K   A +A LVL+ LFM+  Y   G ++  ++  N IL  A++  L
Sbjct: 336 ERVIGPTLGKDSIEKTVNAGIAALVLVGLFMLWRYAVSGFISIVALIFNGILLWAVMVFL 395

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
             TLTLP IAGI+L IG+AVD+N+++ ERI+EE ++ +++  +++ GF RA+  I D+ I
Sbjct: 396 DVTLTLPGIAGIILNIGMAVDANVIIFERIKEEMKRGRTLRVAVEEGFKRAWDAILDAQI 455

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T LIA  VLF FG G ++GFA T+ +  + S+FTA+ + +  +  ++  +K      
Sbjct: 456 TTLIAAFVLFQFGTGPLKGFAATLSIGTITSIFTALFVTKLFLDIVLGGRKSLKYAF 512



 Score =  132 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 74/173 (42%), Gaps = 4/173 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
           ++GP + ++ I K +   I + + + +++  R+       +I  LI +            
Sbjct: 338 VIGPTLGKDSIEKTVNAGIAALVLVGLFMLWRYAVS-GFISIVALIFNGILLWAVMVFLD 396

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A ++  IG +V+  V++++R+++ MK      + R  +++         +  
Sbjct: 397 VTLTLPGIAGIILNIGMAVDANVIIFERIKEEMK---RGRTLRVAVEEGFKRAWDAILDA 453

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +   I+   +  +G   +  FA  ++ G + +  +++F+    L  +   R 
Sbjct: 454 QITTLIAAFVLFQFGTGPLKGFAATLSIGTITSIFTALFVTKLFLDIVLGGRK 506


>gi|330807999|ref|YP_004352461.1| acriflavine resistance protein B; SecD_SecF Protein export membrane
           protein, The (Largely Gram-negative Bacterial)
           Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
 gi|327376107|gb|AEA67457.1| acriflavine resistance protein B; SecD_SecF Protein export membrane
           protein, The (Largely Gram-negative Bacterial)
           Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
           [Pseudomonas brassicacearum subsp. brassicacearum
           NFM421]
          Length = 1054

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/692 (9%), Positives = 182/692 (26%), Gaps = 44/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTSSDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++             + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGVVSRDGSMTKDDLANYIVSNLQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNNFNLTPVDVKNAIAAQNVQISSGQLGGLPALPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFKAILLKVNPDGSQVRVGDVAEVGLGGENYSVSA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L+         +           S   
Sbjct: 280 QFNGAPASGLAVKLANGANALDTAKALRKTIDDLKPFFPQGVEVVFPYDTTPVVSESIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVETLVEAVVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
            G      + F+IT+  ++ +S+  A+    A+   +            +       + N
Sbjct: 460 SGSTGVIYKQFSITIVSAMALSVMVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRN 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +         + +   ++                  + +G +   V   
Sbjct: 520 FDRGVRSYERGVGNMLKHKAPYLLAYVLIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++ ++   +      GE + +  +    G + A       +   + +  
Sbjct: 580 AGSSAERTQVVVDKMREFLLRPSKDGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPW 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 N+       +++        ++ +  
Sbjct: 640 EERNADNSVFKLAARAQQHFFTFRDAMVFAFA 671



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +   +S Q      + L        +++   + L      +    
Sbjct: 258 SQVRVGDVAEVGLGGENYSVSAQFNGAPASGLAVKLANGANALDTAKALRKTIDDLKPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I+  +  ++ + + + + +++  + +   +    T+ + + 
Sbjct: 318 PQGVEVVFPYDTTPVVSESIKGVVETLVEAVVLVFLVMFLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA + GS       F+I +   + ++   ++     +
Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMALSVMVALIFTPAL 492



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 66/161 (40%), Gaps = 7/161 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             +S + + + +   ++ W   +  +  + L I   L   +L G+  ++     +LT IG 
Sbjct: 881  ALSLLMVFLCLAALYESWSIPIAVMLVVPLGIIGALMATSLRGLSNDVYFQVGLLTTIGL 940

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +  ++   L+    +  +   ++    L   + TS+A  + V+P+A+    
Sbjct: 941  AAKNAILIVEFAKE---LHEQGRTLMEAAIEACRMRLRPIIMTSLAFILGVVPLAISTGA 997

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G     +    +  G++ A   +IF      + +     + 
Sbjct: 998  GSGSQHAIGTGVIGGMLTATILAIFWVPLFFVTVSSMGRRK 1038


>gi|86749848|ref|YP_486344.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris
           HaA2]
 gi|86572876|gb|ABD07433.1| protein translocase subunit secF [Rhodopseudomonas palustris HaA2]
          Length = 367

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 114/336 (33%), Positives = 193/336 (57%), Gaps = 17/336 (5%)

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
                 ++    A+ +   ++  +     ++ +            D     F + R    
Sbjct: 1   MTSTQWILIGLGALVVALTIVSIMGWLPSLRIVP-----------DDTHFDFTQFRRISF 49

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DLSVVRSNLESLQIGDISFQ 609
            IS L SI +I L FTHGLN+GIDFKGG  L V A+    D+  +R  L  L +G++  Q
Sbjct: 50  PISALLSIAAITLFFTHGLNFGIDFKGGTLLEVRAHSGAADIPGMRDTLSKLGLGEVQLQ 109

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
            F G    L+R+  QPG   AQ   ++ V+  +         +  E+VGP++S EL+  G
Sbjct: 110 QFGGPSEVLIRVAEQPGGDAAQQEAVQKVRGAL---GNSVDYRRVEVVGPRVSSELLAYG 166

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           ++G++++ + +L+Y+W RF+W FALGA+   + DI  T+GF ++  ++F+LT++AA+LT+
Sbjct: 167 MLGLMLAILGILVYLWFRFEWQFALGAMIANVHDIVLTIGFMSISQVDFDLTSIAALLTI 226

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +GYS+ND VV+YDR+R+ ++ Y   +    L+++SIN TL RS+ T +   +++  + ++
Sbjct: 227 LGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLSRSIITHVTVTLALFALLLF 285

Query: 790 GGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824
           GG+ I SF   M FG ++V   +SIFIAAPIL+++ 
Sbjct: 286 GGNAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 321


>gi|85058626|ref|YP_454328.1| preprotein translocase subunit SecD [Sodalis glossinidius str.
           'morsitans']
 gi|84779146|dbj|BAE73923.1| protein-export membrane protein SecD [Sodalis glossinidius str.
           'morsitans']
          Length = 615

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 159/518 (30%), Positives = 278/518 (53%), Gaps = 37/518 (7%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + + +    + LGLDLRGG H ++EVD D  +N   +   D LR  L+ +GI   ++R
Sbjct: 110 PAWLAMLGAAPMKLGLDLRGGVHFLMEVDMDTALNKLQEQTMDTLRGDLRDKGIPYATVR 169

Query: 93  QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +I+N    + F D+  ++              S L    +  ++ +  +  +   L+   
Sbjct: 170 KIENYGSEIRFRDAETRDQAI-----------SWLTPRHRDLVINSQGDNALRATLADER 218

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + Q   ++++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++LG TA 
Sbjct: 219 LRQARKYSVQQNITILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARAKEILGATAT 278

Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           +    V     +     G            DG   ++  +V ++G H+  +T++   + +
Sbjct: 279 LELRLVNSAVDQTAAANGRVPGDSEVKATRDGQPVVLYKRVILTGDHITDSTSS-ADEYN 337

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
           +P V+IS D  G       T+DNIGK +A +      +                      
Sbjct: 338 RPQVNISLDGTGGTTMSNFTKDNIGKLMATLFVEYKDSGKKDANGRSILVKQEEVINVAT 397

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q+      +I+G      A  L+ +LRAG+L   + IVEE  +G  LG  +I +G  A 
Sbjct: 398 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEESTIGPTLGLQNITQGLEAC 457

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GLV  +LFM+V Y K+GL+A  ++ +N++L + ++SLL  ATLT+P IAGIVL + +A
Sbjct: 458 LWGLVASILFMVVWYRKFGLIATMALIVNLVLIIGIMSLLPGATLTMPGIAGIVLTLAVA 517

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+NERI+EE R  ++V  ++  G+  A+S+I D+N+  LI  ++L+  G G+++G
Sbjct: 518 VDANVLINERIKEELRNGRTVQQAIHEGYRGAFSSIVDANVATLITAIILYAVGTGSIKG 577

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 578 FAITTAIGVATSMFTAIIGTRAIVNLLYGGKRIDKLSI 615



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 80/175 (45%), Gaps = 5/175 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +GP +  + I +G+   +   +A ++++ + ++  F L A   LI+++   +G  +L 
Sbjct: 439 STIGPTLGLQNITQGLEACLWGLVASILFMVVWYR-KFGLIATMALIVNLVLIIGIMSLL 497

Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    +  +A ++  +  +V+  V++ +R+++ ++      + +  I +         V
Sbjct: 498 PGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHEGYRGAFSSIV 554

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             ++A  I+ + +   G   I  FAI  A G+  +  ++I     I+  +Y  + 
Sbjct: 555 DANVATLITAIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLLYGGKR 609


>gi|301168890|emb|CBW28484.1| SecYEG protein translocase auxillary subunit [Haemophilus
           influenzae 10810]
          Length = 615

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 149/515 (28%), Positives = 269/515 (52%), Gaps = 35/515 (6%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + S    N +  GLDLRGG   ++EVD +  +    +   D LR  L+KE I   +++
Sbjct: 110 PAWLSMFGANPMKWGLDLRGGVRFLMEVDMNAALVKRQEQLQDSLRGELRKEKIQYTAIK 169

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             ++  TL       +      +                   +       I++ LS   +
Sbjct: 170 NTEHFGTLITLAVSQRAKAERIIRQL-----------HPTLDITEPDADSINLGLSTAAL 218

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
           ++    AIEQ++ I+R+R+ ++G++E+ IQR G+ RI+I+LPG QD +R +++LG TA +
Sbjct: 219 NEARDLAIEQNLTILRKRVAELGVAEAVIQRQGAERIVIELPGVQDTARAKEILGATATL 278

Query: 213 SFHKVLPNNSKKG-----FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
            F  V  N +                 D  G+   +  +  + G H+  +++  D  +  
Sbjct: 279 EFRIVNQNVTADAISRNMLPADSEVKYDRQGHPVALFKRAVLGGEHIINSSSGLDQHSST 338

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VIN 309
           P V ++ D  G     + T+    KP+A +                              
Sbjct: 339 PQVSVTLDSEGGEIMSQTTKKYYKKPMATLYVEYKDNGKKDENGKTILEKHEEVINVATI 398

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           Q       QI+G  +I  A  L+ +L++G+L   + IVEER +G  LG+ ++ +G  A +
Sbjct: 399 QGRFGSNFQITGVDSIAEAHNLSTLLKSGALIAPIQIVEERTIGPSLGAQNVEQGINASL 458

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAV 428
            GLV ++ FM+  Y  +G++A F++ +N++L + L+S+L  ATL++P IAGIVL +G++V
Sbjct: 459 WGLVAVIAFMLFYYKMFGVIASFALVINIVLLVGLMSILPGATLSMPGIAGIVLTLGMSV 518

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D+N+L+ ERI+EE R  +S+  +++ G++ A+++IFD+N+T ++  ++L+  G G ++GF
Sbjct: 519 DANVLIFERIKEEIRNGRSIQQAINEGYNGAFTSIFDANLTTILTAIILYAVGTGPIQGF 578

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           AIT+ L + ISMFTAI+  RA++  +   K++K +
Sbjct: 579 AITLSLGVAISMFTAITGTRALVNALYGGKQLKKL 613



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 84/177 (47%), Gaps = 5/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + + +GI   +   +A++ ++   +K  F + A   L+++I   +G  ++  
Sbjct: 440 TIGPSLGAQNVEQGINASLWGLVAVIAFMLFYYKM-FGVIASFALVINIVLLVGLMSILP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++  +A ++  +G SV+  V++++R+++ ++      S +  I++  N        
Sbjct: 499 GATLSMPGIAGIVLTLGMSVDANVLIFERIKEEIR---NGRSIQQAINEGYNGAFTSIFD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ + +   G   I  FAI ++ G+ ++  ++I     ++  +Y  +    
Sbjct: 556 ANLTTILTAIILYAVGTGPIQGFAITLSLGVAISMFTAITGTRALVNALYGGKQLKK 612


>gi|190575902|ref|YP_001973747.1| putative acriflavin resistance protein B [Stenotrophomonas
           maltophilia K279a]
 gi|48927366|emb|CAG34257.1| RND protein [Stenotrophomonas maltophilia]
 gi|190013824|emb|CAQ47462.1| putative acriflavin resistance protein B [Stenotrophomonas
           maltophilia K279a]
          Length = 1040

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 80/702 (11%), Positives = 188/702 (26%), Gaps = 42/702 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  +  +P+  P                      
Sbjct: 8   RPIFAWVIAIIIMLAGGLALF-----KLPVSMYPNVAPPAVE---------ISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L        +        ITL+F      +    +V   LQ 
Sbjct: 54  AKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         + +     +     A + +  +    +D++       
Sbjct: 114 AMPLLPQEVQRQGINVAKSSSGFLNVIAFVSENGSMDANDIADYVGSNVVDRLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     + A+++      N        G            
Sbjct: 174 NIQVFG-GKYAMRIWLDPNKLHTYGLSVAEVTAAIKAQNAQVAIGQLGGAPSIKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +           
Sbjct: 233 TINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESYDFVT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +    +     +   T          +++         V          S   
Sbjct: 280 RYNGQPASGLAVTLATGANALDTAAGVNAALEDMKSFFPAGLKAEVPYDTTPFVRVSIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L++LG ++ + ++  +V
Sbjct: 340 VVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAMLGFSVNMLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+ T+  ++ +S+  AI +  A+   +++  K     +          + 
Sbjct: 460 SGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLKKGEHHVAHRGLAGRFFNG 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R        S  +      ++       GI     + +GVL  R     +   +
Sbjct: 520 FNRGFDR-------TSESYQRGVRGIIHRPWRFMGIVAALFVLMGVLFVRLPSSFLPNED 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTIQNTE 655
              L     +      E+        +      +   ++ V      +            
Sbjct: 573 QGVLMALVQAPVGATQERTLESIAALENHFLQNEKDAVDSVFSVQGFSFAGMGQNAGMAF 632

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           +     S      G++ +   A+A L  I   F + F   AI
Sbjct: 633 VKLKDWSERDANNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 82/241 (34%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  D   +      + L        +++     +    + +    P     
Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVNAALEDMKSFFPAGLKA 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     R  I+  +  +I + + + + +++  + +   L     + + +  T G  
Sbjct: 324 EVPYDTTPFVRVSIKGVVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+  + A++  IG  V+D +VV + +     +    +S  +   KS+ +  G 
Sbjct: 384 AMLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V   +      +PMA   GS       F+  +   + ++   +I +   +   +     
Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501

Query: 829 K 829
           K
Sbjct: 502 K 502



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 77/247 (31%), Gaps = 13/247 (5%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   +      +       V  S   +         +   N                
Sbjct: 779  QPFRMVPEDFDLWSVKNDKGEMVPFSAFATKHWDYGSPRLERYNGVSAMEIQGEPAPGVA 838

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   + ++ K+         T  + +         L+        +S + + + +  
Sbjct: 839  SGDAMAEIEQLAKQLPAGFGIEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAA 892

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             ++ W      +    L I   +      G+E ++    A+LT +G +  + +++ +  +
Sbjct: 893  MYESWSVPTAVLLAAPLGILGAVLANTFKGLERDIYFQVAMLTTVGLTSKNAILIVEFAK 952

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            +N+          + I  ++ + L   V TS+A  + V+P+A+    G     +    + 
Sbjct: 953  ENL---EKGAGLIESIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVL 1009

Query: 803  FGIVVAA 809
             G++V  
Sbjct: 1010 GGMIVGT 1016


>gi|48927356|emb|CAG34265.1| RND protein [Stenotrophomonas maltophilia]
          Length = 1040

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 79/702 (11%), Positives = 188/702 (26%), Gaps = 42/702 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  +  +P+  P                      
Sbjct: 8   RPIFAWVIAIIIMLAGGLALF-----KLPVSMYPNVAPPAVE---------ISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L        +        ITL+F      +    +V   LQ 
Sbjct: 54  AKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         + +     +     A + +  +    +D++       
Sbjct: 114 AMPLLPQEVQRQGINVAKSSSGFLNVIAFVSENGSMDANDIADYVGSNVVDRLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     + A+++      N        G            
Sbjct: 174 NIQVFG-GKYAMRIWLDPNKLHTYGLSVAEVTAAIKAQNAQVAIGQLGGAPSVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +           
Sbjct: 233 TINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESYDFVT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +    +     +   T          +++         +          S   
Sbjct: 280 RYNGQPASGLAVTLATGANALDTAAGVDAALDDMKSFFPAGLKAEIPYDTTPFVRVSIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L++LG ++ + ++  +V
Sbjct: 340 VVQTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAMLGFSVNMLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+ T+  ++ +S+  AI +  A+   +++  K     +          + 
Sbjct: 460 SGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLKKGEHHVAHRGLAGRFFNG 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R        S  +      ++       GI     + +GVL  R     +   +
Sbjct: 520 FNRGFDR-------TSESYQRGVRGIIHRPWRFMGIVAALFVLMGVLFVRLPSSFLPNED 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTIQNTE 655
              L     +      E+        +      +   ++ V      +            
Sbjct: 573 QGVLMALVQAPVGATQERTLESIAALENHFLQNEKDAVDSVFSVQGFSFAGMGQNAGMAF 632

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           +     S      G++ +   A+A L  I   F + F   AI
Sbjct: 633 VKLKDWSERDANNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 82/241 (34%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  D   +      + L        +++     ++     +    P     
Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVDAALDDMKSFFPAGLKA 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     R  I+  +  ++ + + + + +++  + +   L     + + +  T G  
Sbjct: 324 EIPYDTTPFVRVSIKGVVQTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+  + A++  IG  V+D +VV + +     +    +S  +   KS+ +  G 
Sbjct: 384 AMLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V   +      +PMA   GS       F+  +   + ++   +I +   +   +     
Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501

Query: 829 K 829
           K
Sbjct: 502 K 502



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 77/247 (31%), Gaps = 13/247 (5%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   +      +       V  S   +         +   N                
Sbjct: 779  QPFRMVPEDFDLWSVKNDKGEMVPFSAFATKHWDYGSPRLERYNGVSAMEIQGEPAPGVA 838

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   + ++ K+         T  + +         L+        +S + + + +  
Sbjct: 839  SGDAMAEIEQLAKQLPAGFGIEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAA 892

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             ++ W      +    L I   +      G+E ++    A+LT +G +  + +++ +  +
Sbjct: 893  MYESWSVPTAVLLAAPLGILGAVLANTFKGLERDIYFQVAMLTTVGLTSKNAILIVEFAK 952

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            +N+          + I  ++ + L   V TS+A  + V+P+A+    G     +    + 
Sbjct: 953  ENL---EKGAGLIEAIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVL 1009

Query: 803  FGIVVAA 809
             G++V  
Sbjct: 1010 GGMIVGT 1016


>gi|238783579|ref|ZP_04627600.1| Acriflavine resistance protein B [Yersinia bercovieri ATCC 43970]
 gi|238715457|gb|EEQ07448.1| Acriflavine resistance protein B [Yersinia bercovieri ATCC 43970]
          Length = 1050

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 178/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGALAIM-----KLPVAQYPTIAPPA-------------ITISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNYNLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVQLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALDTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +A        + V   ++     +  L         + +G     V
Sbjct: 516 NRMFEKSTHHYTDSVANILRSTGRYLVIYLVIVIGMGVLFLRLPTSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L  +    +  +       F V      G           +K    
Sbjct: 576 QMPAGATQERTQKVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RPGEQNKVPAIVARASAAFSQIKDGLVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVQLGAESYNIIARYNGKPAAGIGIKLATGANALDTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMDLMQELAGKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + VLP+ +    G     +    +  G++ A  
Sbjct: 958  G--LVESTLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|22124956|ref|NP_668379.1| multidrug efflux protein [Yersinia pestis KIM 10]
 gi|45440647|ref|NP_992186.1| multidrug efflux protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108808619|ref|YP_652535.1| multidrug efflux protein [Yersinia pestis Antiqua]
 gi|108811122|ref|YP_646889.1| multidrug efflux protein [Yersinia pestis Nepal516]
 gi|145600027|ref|YP_001164103.1| multidrug efflux protein [Yersinia pestis Pestoides F]
 gi|149365021|ref|ZP_01887056.1| multidrug efflux protein [Yersinia pestis CA88-4125]
 gi|162421154|ref|YP_001607260.1| multidrug efflux protein [Yersinia pestis Angola]
 gi|165927622|ref|ZP_02223454.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165935980|ref|ZP_02224550.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166011021|ref|ZP_02231919.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213071|ref|ZP_02239106.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399702|ref|ZP_02305226.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421552|ref|ZP_02313305.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167423277|ref|ZP_02315030.1| acriflavine resistance protein B [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218930163|ref|YP_002348038.1| multidrug efflux protein [Yersinia pestis CO92]
 gi|229838735|ref|ZP_04458894.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896112|ref|ZP_04511282.1| multidrug efflux protein [Yersinia pestis Pestoides A]
 gi|229899303|ref|ZP_04514446.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901353|ref|ZP_04516475.1| multidrug efflux protein [Yersinia pestis Nepal516]
 gi|294504868|ref|YP_003568930.1| multidrug efflux protein [Yersinia pestis Z176003]
 gi|21957797|gb|AAM84630.1|AE013708_9 acridine efflux pump [Yersinia pestis KIM 10]
 gi|45435504|gb|AAS61063.1| multidrug efflux protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774770|gb|ABG17289.1| multidrug efflux protein [Yersinia pestis Nepal516]
 gi|108780532|gb|ABG14590.1| multidrug efflux protein [Yersinia pestis Antiqua]
 gi|115348774|emb|CAL21728.1| multidrug efflux protein [Yersinia pestis CO92]
 gi|145211723|gb|ABP41130.1| multidrug efflux protein [Yersinia pestis Pestoides F]
 gi|149291434|gb|EDM41508.1| multidrug efflux protein [Yersinia pestis CA88-4125]
 gi|162353969|gb|ABX87917.1| acriflavine resistance protein B [Yersinia pestis Angola]
 gi|165916125|gb|EDR34732.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165920376|gb|EDR37653.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165990021|gb|EDR42322.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205858|gb|EDR50338.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960471|gb|EDR56492.1| acriflavine resistance protein B [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167052206|gb|EDR63614.1| acriflavine resistance protein B [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167057447|gb|EDR67193.1| acriflavine resistance protein B [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681282|gb|EEO77376.1| multidrug efflux protein [Yersinia pestis Nepal516]
 gi|229687705|gb|EEO79778.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695101|gb|EEO85148.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701035|gb|EEO89064.1| multidrug efflux protein [Yersinia pestis Pestoides A]
 gi|262366853|gb|ACY63410.1| multidrug efflux protein [Yersinia pestis D182038]
 gi|294355327|gb|ADE65668.1| multidrug efflux protein [Yersinia pestis Z176003]
          Length = 1050

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITIAANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 PGVGDVQLFGSQ-YAMRIWMDPHKLNNYKLTPVDVINAIKIQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPSGLTVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +++  K            + 
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIKKGDHGPKTGFFGWF 515

Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                                   + V    +    ++  +         + +G     V
Sbjct: 516 NNMFEKSTHHYTDSVANILRSTGRYLVIYLAIVIGMAVLFMRLPSSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L  +    +  +       F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLNHVTDYYLDKEKNVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RKGEQNKVPAIVSRASAAFSKIKDGMVFA 664



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 88/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLTVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPIKK 502



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+E ++     +LT IG S  + +++ +  +  M          +   +S+   L 
Sbjct: 915  ATLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLESVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G++ A   +I
Sbjct: 973  PILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018


>gi|170754258|ref|YP_001782697.1| preprotein translocase subunit SecF [Clostridium botulinum B1 str.
           Okra]
 gi|169119470|gb|ACA43306.1| protein-export membrane protein SecF [Clostridium botulinum B1 str.
           Okra]
          Length = 287

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 83/287 (28%), Positives = 148/287 (51%), Gaps = 8/287 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS++  +  +  L   GLNYGIDFKGG  + +   +      V   ++     
Sbjct: 7   KTKIWFSISLIIILTGMFFLIKDGLNYGIDFKGGTVVQINIGKDFKKEEVDQIVKKHTSD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ +      N  + ++          ++   VK K         + + + +GP + +E
Sbjct: 67  SVTNKV----NNTQIEIRSNSLTDEEINKLFSDVKSKYNLKDKD--LVSQQRIGPSVGKE 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L RK ++ +II+ IAMLIY+ IRF++ FAL AI  L+ DI  T+  +A+F +  + + +A
Sbjct: 121 LKRKALLALIIANIAMLIYVGIRFEFNFALAAILGLVHDILITVSIYAIFKLPVSSSFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           AVLT++GYS+ND +V++DR+R+N K         ++ + SI +T+ RS+ T +    +++
Sbjct: 181 AVLTIVGYSINDTIVIFDRIRENQKKMRRK-DVSEIANISITQTMSRSINTVLTTLFTIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + V+    I  FA P+  GI+    SSIFI++P+ +     +  N 
Sbjct: 240 AVYVF-VPSIRDFAFPLIVGIITGCYSSIFISSPLWILFKKTQLGNK 285


>gi|333009896|gb|EGK29331.1| inner membrane protein [Shigella flexneri K-272]
 gi|333020732|gb|EGK39992.1| inner membrane protein [Shigella flexneri K-227]
          Length = 1049

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTITPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVAVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|284048855|ref|YP_003399194.1| protein-export membrane protein SecF [Acidaminococcus fermentans
           DSM 20731]
 gi|283953076|gb|ADB47879.1| protein-export membrane protein SecF [Acidaminococcus fermentans
           DSM 20731]
          Length = 293

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 87/293 (29%), Positives = 151/293 (51%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                 ++       I+ +  I  I  +F  G N GIDF GG  L +  ++PV ++ VR+
Sbjct: 1   MKKFSIVKHARIFFSITAVVLIVGIVSMFARGFNLGIDFTGGSILDIKFDQPVTVAQVRT 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L   Q+G    Q    ++             +        V   ++  +  + +   E 
Sbjct: 61  VLSDHQLGSSVIQLGSSDQQVESSQSVLIRTGLISDSQRVDVMNDLSNRLGHNEVLRVEN 120

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  +  +L++  +  V++S + M+IYI IRF+  FAL AI  LI+D+  TL +F++  +
Sbjct: 121 VGATVGGDLVKSAVGAVVLSWVLMIIYITIRFELRFALAAIVALIIDVMVTLTWFSVLHL 180

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           E + + VAA+LT++GYSVN  +VV+DR+R+N+  +  + S  DL+D SI +T+ RSVYT+
Sbjct: 181 EIDSSFVAALLTVVGYSVNGTIVVFDRIRENLHTHRRNESMGDLVDASIWQTMTRSVYTT 240

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +    +V+ + ++GG  I +F+  M  G      +S F+A  + LF      +
Sbjct: 241 LTTLFAVVAIFLFGGETIHNFSFAMLVGFCSGFYTSTFLAGSMWLFFRKKLKR 293


>gi|115379874|ref|ZP_01466936.1| protein-export membrane protein SecF [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822778|ref|YP_003955136.1| protein-export membrane protein secf [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363111|gb|EAU62284.1| protein-export membrane protein SecF [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395850|gb|ADO73309.1| Protein-export membrane protein SecF [Stigmatella aurantiaca
           DW4/3-1]
          Length = 385

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/246 (26%), Positives = 132/246 (53%), Gaps = 4/246 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +   +   +    +++ +E    G    +     +             +A      + + 
Sbjct: 129 INFRSATTLTPQAIKAAVEKSGTGVQEVRELGSAQGSSGFDYQVVASGMADKVFSALSQ- 187

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
              +  P    +  + VGP++ ++L  +GI+ ++ +  A+L+Y+  RF + F  GA+  +
Sbjct: 188 --GQASPDFEQRRVDYVGPQVGKQLRNRGIMALVYAMFAILVYVAFRFDFKFGPGALLAM 245

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           + D+    GF+ +   EFNLT++AA+LT++GYSVND +V+YDR+R++M  Y       ++
Sbjct: 246 LHDVVMVAGFYLVSRREFNLTSIAALLTIVGYSVNDTIVIYDRIREDMNKYQ-GKPLAEV 304

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I+ +IN+TLGR++ TS    +S++ + ++G   I  FA  M  GI+V   SS++IA+P+ 
Sbjct: 305 INIAINDTLGRTILTSGTTALSLVGLLIFGVGEIWDFAAAMLVGILVGTYSSVYIASPLT 364

Query: 821 LFIYDW 826
           +++ + 
Sbjct: 365 IWLDER 370


>gi|283781865|ref|YP_003372620.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pirellula staleyi DSM 6068]
 gi|283440318|gb|ADB18760.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pirellula staleyi DSM 6068]
          Length = 1079

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 73/544 (13%), Positives = 156/544 (28%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ ++I  +G++             ++P  +P   +                  
Sbjct: 10  RPIFATVVSTVIVILGIIA-----YYDLPAAQYPDIVPPTIV---------VRASYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D +   +    ++  + ++                +T++F      +     V   +  
Sbjct: 56  PDVIAETVATPIEQEVNGVEDMLYMSSQSTNDGAMTLTITFKLGTDLDKAQVLVQNRVAT 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  D ++  + T       +++      +     +      + Q  D +   +   
Sbjct: 116 AEARLPEDVRRLGVTTIKSSPDLLMVIHMVSPENRFDQLYIGNYALIQVRDALARVDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L  L  T   +       N      + G   +   +  Q 
Sbjct: 176 DVSAFGLREYSMRIWLDPDKLANLGLTAGDVVASLREQNVQVASGVIGQPPIPQGNDFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +                 +    I     G R         I           
Sbjct: 236 TVNTLGRL-------------LTPEQFESIIVRSGSGGRVVRVKDVARIELGARDYSVNS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L          + +   +   T +        L           +          S   
Sbjct: 283 YLDNQPAVALAIAQRPGSNALETADGVEATIRELSRNFPKGLEYRIVYNPTEFVRESIDS 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  LV   +I +++I T A +S  G +L + S+ G+V
Sbjct: 343 VIHTLYEAVVLVVIVVLVFLQNWRATLVPLVAIPVSLIGTFAAMSAFGFSLNMLSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E +        S   +     S    A   I        + T  + 
Sbjct: 403 LAIGIVVDDAIVVVENVERHIADGLSPRDAAYKAMSEVTGAVIAIAVGLSAVFVPTAFIS 462

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S L+S F ++++  A+ + +++    K      L  F       
Sbjct: 463 GISGQFFRQFALTIAVSTLLSAFNSLTLSPALCVILLQPHGAKKDWFGRLWDFCFGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 LFNR 526



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 53/144 (36%), Gaps = 8/144 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                A+  I  + L     LG   L G++ NL      + LIG +  + V++ +     +
Sbjct: 904  SLPMAIILIAPVCLP-FALLGVH-LRGMDNNLITQIGFVVLIGLAAKNAVLIVEFA---V 958

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L     +  +   +S    L   + TS A  + V+P+A     G  +       +  G+
Sbjct: 959  QLEEQGRTAMEAAIESCRMRLRPIMMTSFAFILGVVPLARAEGPGSELRQVLGTAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +      +F+     + +     +
Sbjct: 1019 LGVTILGLFLTPAFYVLLRGITDR 1042



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 61/136 (44%), Gaps = 9/136 (6%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L AI    + +  T    + FG   N+ ++  ++  IG  V+D +VV + +    + 
Sbjct: 369 LVPLVAI---PVSLIGTFAAMSAFGFSLNMLSLFGLVLAIGIVVDDAIVVVENV---ERH 422

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVV 807
               +S RD   K+++E  G  +  ++      +P   + G  G     FA+ +A   ++
Sbjct: 423 IADGLSPRDAAYKAMSEVTGAVIAIAVGLSAVFVPTAFISGISGQFFRQFALTIAVSTLL 482

Query: 808 AASSSIFIAAPILLFI 823
           +A +S+ ++  + + +
Sbjct: 483 SAFNSLTLSPALCVIL 498


>gi|153950197|ref|YP_001402028.1| acriflavine resistance protein B [Yersinia pseudotuberculosis IP
           31758]
 gi|170025425|ref|YP_001721930.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Yersinia
           pseudotuberculosis YPIII]
 gi|152961692|gb|ABS49153.1| acriflavine resistance protein B [Yersinia pseudotuberculosis IP
           31758]
 gi|169751959|gb|ACA69477.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           pseudotuberculosis YPIII]
          Length = 1050

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITIAANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 PGVGDVQLFGSQ-YAMRIWMDPHKLNNYKLTPVDVINAIKIQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPSGLTVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +++  K            + 
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIKKGDHGPKTGFFGWF 515

Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                                   + V    +    ++  +         + +G     V
Sbjct: 516 NNMFEKSTHHYTDSVANILRSTGRYLVIYLAIVIGMAVLFMRLPSSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L  +    +  +       F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLNQVTDYYLDKEKNVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RKGEQNKVPAIVSRASAAFSKIKDGMVFA 664



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 88/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLTVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPIKK 502



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+E ++     +LT IG S  + +++ +  +  M          +   +S+   L 
Sbjct: 915  ATLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLESVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G++ A   +I
Sbjct: 973  PILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018


>gi|194367239|ref|YP_002029849.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Stenotrophomonas maltophilia R551-3]
 gi|194350043|gb|ACF53166.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Stenotrophomonas maltophilia R551-3]
          Length = 1040

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 82/706 (11%), Positives = 187/706 (26%), Gaps = 50/706 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  +  +P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLALF-----KLPISMYPNVAPPA-------------VEISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K           S    Q  ITL+F      +    +V  
Sbjct: 50  PGASAKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         + +     +     A + +  +    +D++   
Sbjct: 110 KLQLAMPLLPQEVQRQGINVAKSSSGFLNVIAFVSEDGSMDANDIADYVGSNVVDRLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     +  +++      N        G        
Sbjct: 170 PGVGNIQVFG-GKYAMRIWLDPNKLHTYGLSVPEVTAAIKAQNAQVAIGQLGGAPSVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                 +       
Sbjct: 229 QLNATINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    +     +   T          L           +          
Sbjct: 276 DFVTRYNGQPASGLAVTLATGANALDTAAGVDATLKELEGFFPAGLKAEIPYDTTPFVRV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +LS+LG ++ + ++
Sbjct: 336 SIKGVVQTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLSVLGFSVNMLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      R F+ T+  ++ +S+  AI +  A+   +++  K     +        
Sbjct: 456 MAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLKKGEHHVAHKGWSGR 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +     F R        S  +      +L       GI     + +GVL  R     +
Sbjct: 516 FFNGFNRGFDR-------TSESYQRGVRGILHRPWRFMGIVAALFLLMGVLFVRLPSSFL 568

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTI 651
              +   L     +      E+        +      +   +E V      +        
Sbjct: 569 PNEDQGVLMALVQAPVGATQERTLESIAALEKHFMENEKDAVESVFSVQGFSFAGMGQNA 628

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
               +            G++ +   A+A L  I   F + F   AI
Sbjct: 629 GMAFVKLKDWKDRDADNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 84/241 (34%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  D   +      + L        +++     ++   K++    P     
Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVDATLKELEGFFPAGLKA 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     R  I+  +  ++ + + + + +++  + +   L     + + +  T G  
Sbjct: 324 EIPYDTTPFVRVSIKGVVQTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           ++ G   N+  + A++  IG  V+D +VV + +     +    +S  +   KS+ +  G 
Sbjct: 384 SVLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V   +      +PMA   GS       F+  +   + ++   +I +   +   +     
Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501

Query: 829 K 829
           K
Sbjct: 502 K 502



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 78/245 (31%), Gaps = 13/245 (5%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 +      +       V  S   S         +   N                  
Sbjct: 781  FRMVPEDFDLWSVKNDKGEMVPFSAFASKRWDYGSPRLERYNGVSATEIQGEPAPGVASG 840

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + ++ K+         T  + +         L+        +S + + + +   +
Sbjct: 841  DAMAEIEQLAKQLPQGFGVEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAALY 894

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +    L I   +      G+E ++    A+LT +G +  + +++ +  ++N
Sbjct: 895  ESWSVPTSVLLVAPLGILGAVLANTFRGMERDIYFQVAMLTTVGLTSKNAILIVEFAKEN 954

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +       S  + I  ++ + L   V TS+A  + V+P+A+    G     +    +  G
Sbjct: 955  L---EKGASLIESIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVLGG 1011

Query: 805  IVVAA 809
            ++V  
Sbjct: 1012 MIVGT 1016


>gi|296101597|ref|YP_003611743.1| AcrB protein [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056056|gb|ADF60794.1| AcrB protein [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 1048

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/685 (9%), Positives = 174/685 (25%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +          +           S   
Sbjct: 280 KFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFFPSGLKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L++ G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAIFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++ +S+  A+ +  A+   +                   +   
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGGHGEHKGFFGWFNRMF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + +   I+    +   +         + +G          
Sbjct: 520 DKSTHHYTDSVGNILRSTGRYLLLYIIIVVGMAYLFVRLPSSFLPDEDQGVFLTMAQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +    ++ +  + E  F V      G           +K        
Sbjct: 580 GASQERTQKVLDEVTDYYLTKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGE 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            + ++           ++    +  
Sbjct: 640 ENKVEAITGRAMGTFSQIKDAMVFA 664



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A+FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAIFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMNLMEELASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + VLP+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|163854938|ref|YP_001629236.1| AcrB/AcrD/AcrF family protein [Bordetella petrii DSM 12804]
 gi|163258666|emb|CAP40965.1| AcrB/AcrD/AcrF family protein [Bordetella petrii]
          Length = 1026

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 163/533 (30%), Gaps = 39/533 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  +GL+        +  +  +P+                 + + +  
Sbjct: 9   KRPVFASVLSLIIVLVGLIS-----YSRLTVREYPNIDEPIV---------SVNTIYKGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++   +     R  +++I + F  SR  +  A +V   +  
Sbjct: 55  SPEVIESQVTKPLEDQLAGIEGVNVMTSRSRTERSQINIKFDLSRDPDAAAAEVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  + ++         I+            AI+ S  I R    ++ +     
Sbjct: 115 ARRYLPDEIDEPIIGKVEADAYPIIYIAVES--GSLSAIQTSDYINRYIKTRLSVLPGAA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    D  +L     T   +       N          R    S  +  
Sbjct: 173 EVRVYGERLPSMRIYVDRDKLAAYNLTVQDVETALASQNVEIPAGRIESRDREFSVVSST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + + I +                      +            +    A      
Sbjct: 233 DLQTPAQFAAIVVA--------------------NVKGYPVRLGDVAKVEIGAADDRILS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + ++  +     +      A L           +   +      S   
Sbjct: 273 RFNGRPAINIGLTRQSTANPLDLSKAVRAEVAQLNETLPAGMKLNIAYDSSVFIERSIQS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F  +   +  ++   +I +++I    L+ L G ++   ++  +V
Sbjct: 333 VFRTIGEAIVLVVLVIFFFLRNLRASIIPIVTIPVSLIGACGLMYLFGFSVNTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G       +    +T +     L F  
Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGMPRRQAAFQGAKEIGFAVVAMTLTLVTVYAPLAFAT 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           G   R    FA+T+  ++L+S F A+++   M   ++R++   +   N +  +
Sbjct: 453 GRTGRLFIEFALTLAGAVLVSGFVALTLTPMMCSVLLRHEPRHNRWYNLVEGW 505



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 78/216 (36%), Gaps = 7/216 (3%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +    + +  ++ +     ++ E +P     N            I+     +  + + +
Sbjct: 285 TRQSTANPLDLSKAVRAEVAQLNETLPAGMKLNIAYDSSVFIERSIQSVFRTIGEAIVLV 344

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ++ I+   +    ++  I T+ + +    G   LFG   N   + A++  IG  V+D +V
Sbjct: 345 VLVIFFFLRNLRASIIPIVTIPVSLIGACGLMYLFGFSVNTLTLLAMVLAIGLVVDDAIV 404

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---S 796
           V + +    +     +  R    +   E     V  ++       P+A   G        
Sbjct: 405 VLENI---FRHIEEGMPRRQAAFQGAKEIGFAVVAMTLTLVTVYAPLAFATGRTGRLFIE 461

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           FA+ +A  ++V+   ++ +   +   +     ++ R
Sbjct: 462 FALTLAGAVLVSGFVALTLTPMMCSVLLRHEPRHNR 497



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 51/139 (36%), Gaps = 9/139 (6%)

Query: 668 KGIVGVIISAIAMLIY--IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            G + ++ +     IY  +  +F+ W      + ++ L +T  L      G   ++ +  
Sbjct: 845 SGSIYLVFAMALAFIYLVMAAQFESWRNPFIIMLSVPLSMTGALLALWASGGTLSIYSQI 904

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++TL+G      +++ +      +L        D + ++    L   + T+ A  +  L
Sbjct: 905 GLITLVGLITKHGILIVEFAN---QLRDQGRELVDAVVEASVLRLRPILMTTGAMVLGTL 961

Query: 785 PMAVW---GGSVIGSFAIP 800
           P+AV    G          
Sbjct: 962 PLAVSHGAGAESRQQIGWV 980


>gi|291616574|ref|YP_003519316.1| AcrB [Pantoea ananatis LMG 20103]
 gi|291151604|gb|ADD76188.1| AcrB [Pantoea ananatis LMG 20103]
          Length = 1049

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 66/565 (11%), Positives = 156/565 (27%), Gaps = 46/565 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  L     +  ++++P+  P               + ++ + 
Sbjct: 8   RPIFAWVLAIIVMLAGALSIL-----KLPIEQYPNVAPPA-------------IEIQANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S       +T+SF      +    +V  
Sbjct: 50  PGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSDSSGALTLTISFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    D    +  + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGIQVKKSSSSFLMVAGFISDDGSMNQNDISDYVASNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DPS+L     T   +       N        G        
Sbjct: 170 PGVGDTQVFGAQ-YAMRIWMDPSKLNNYQLTPVDVINALKTQNAQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTST-------------KEFGNILLKVNADGSQVRLRDVAQIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T E      A L+         +           
Sbjct: 276 EIIARYNGKPASGIGIKLATGANALNTAEAVKAELAKLQPTFPAGMKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++S  G ++   ++
Sbjct: 336 SIFEVVKTLMEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMVEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+         +K +      +   
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPVKKGDHGKTTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                   F ++    V        
Sbjct: 511 FFGWFNRLFDKSTHHYVDSVGHIVR 535



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 87/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +      + +        +++     ++    K+    
Sbjct: 258 SQVRLRDVAQIELGGENYEIIARYNGKPASGIGIKLATGANALNTAEAVKAELAKLQPTF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PAGMKVVYPYDTTPFVKISIFEVVKTLMEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GGS       F+I +   + ++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPVKK 502



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L T    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMNLMEELASKLPTGIGFDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L F  L G+  ++  V  +LT +G S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLFTTLRGLSNDVYFVVGLLTTVGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + VLP+A+    G     +    +  G+V A +
Sbjct: 958  G--LVEATLEACRMRLRPILMTSLAFILGVLPLAISTGAGSGAQNAVGTGVMGGMVTATA 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|307298264|ref|ZP_07578068.1| protein-export membrane protein SecF [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916350|gb|EFN46733.1| protein-export membrane protein SecF [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 306

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 88/305 (28%), Positives = 153/305 (50%), Gaps = 10/305 (3%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 F+  R + + +S++  + S+  +FT G N+G+DF GGI++ V            
Sbjct: 1   MTFKADFVGKRKYFIALSLVLIVVSVIFIFTKGFNFGVDFTGGIEISVSVQDVDMTVAEM 60

Query: 596 SNLESLQIGDI---------SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             L S +  D                  +               ++   +M+     + V
Sbjct: 61  RELLSAEDPDFAAARIIKQRPLTEEGSSEQRSRFSIIVNTSESEESITAKMLAGLEVKDV 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               I +   +    ++E+     + V +S   +L+YI IRFK+ F +GAI TLI D+  
Sbjct: 121 TNDNILSVSTISGYAAQEIRGYAWIAVTVSMALLLLYITIRFKFSFGVGAILTLIHDVII 180

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            LGF+++FGIEFN   VA++LTL+GYS+ND +VVYDR+R+N K      +   +++ SIN
Sbjct: 181 VLGFYSIFGIEFNAPVVASLLTLVGYSLNDTIVVYDRIRENTKKM-RGKTIETVVNTSIN 239

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           + + RS+ TS+  F++VL + ++ G V+  FA  M  G+VV   SS++I++P+++     
Sbjct: 240 DVIVRSINTSLTTFLAVLTLFIFSGEVLRPFAFGMLVGVVVGTYSSLYISSPVVIEWLKR 299

Query: 827 RAKNA 831
               +
Sbjct: 300 SESRS 304


>gi|311103922|ref|YP_003976775.1| AcrB/AcrD/AcrF family protein 1 [Achromobacter xylosoxidans A8]
 gi|310758611|gb|ADP14060.1| AcrB/AcrD/AcrF family protein 1 [Achromobacter xylosoxidans A8]
          Length = 1038

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 77/635 (12%), Positives = 186/635 (29%), Gaps = 41/635 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  IGL+        +  +  +P                      +  
Sbjct: 9   KRPVFASVLSLIIVLIGLIS-----YSRLTVREYPKIDEPIV---------SVDTTYKGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++   +     R  ++ I + F  SR  +  A +V   +  
Sbjct: 55  SPEVIESQVTKPLEDQLAGIEGVDVMTSRSRSERSLINIKFNLSRNPDAAAAEVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  + ++         I+            AI+ S  I R    ++ +     
Sbjct: 115 ARRFLPDEIDEPIIGKVEADSQPIIYIAVES--GTYSAIQTSDYINRYIKTRLSVLPGAA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    D  +L     T   +       N          R    S  +  
Sbjct: 173 EVRVFGERLPSMRIYVDRDKLAAYGLTVQDVEAALRSQNVEIPAGRIESRAREFSVVSST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                      ++    +           N+    A      
Sbjct: 233 DLQTPAQFE--------------------NVIVANVKGYPVRMRDVANVEIAAASDRVLS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + ++  +     + A    A L           +   +      S   
Sbjct: 273 RFNGKPAINIGVTRQSTANPLELSKAAREEVARLNENLPAGMKLNIAYDSSVFIERSIDS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F  +   +  ++   +I ++++   AL+ L G ++   ++  +V
Sbjct: 333 VFHTIGEAIVLVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G       +    +T +     L F  
Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGMPRKEAALRGSREIGFAVVAMTMTLVTVYAPLAFAT 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA+ +  ++L+S F A+++   M   ++R++   S   N +  +       
Sbjct: 453 GRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQSSHSRWYNMIEGWLNAMSNG 512

Query: 539 AIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
             + + A  R   + + I  ++ +   +    +   +       +        + + +  
Sbjct: 513 YRRALGASLRHRWLVVVIGVAVAAASGVLFKVVKSELAPIEDRGVVFGIVSSPEGATLNY 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            LES+   +  +          V + +        
Sbjct: 573 TLESMLGIEKFYSEIPEASGSQVTVGFPTVTDGTA 607



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 84/244 (34%), Gaps = 7/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V +   +     +  +        +   +    + +  ++       ++ E +P     
Sbjct: 257 DVANVEIAAASDRVLSRFNGKPAINIGVTRQSTANPLELSKAAREEVARLNENLPAGMKL 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N            I      +  + + +++ I+   +    ++  I T+ + +       
Sbjct: 317 NIAYDSSVFIERSIDSVFHTIGEAIVLVVLVIFFFLRNLRASIIPIVTIPVSLVGACALM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   N   + A++  IG  V+D +VV + +    +     +  ++   +   E    
Sbjct: 377 YLFGFSINTLTLLAMVLAIGLVVDDAIVVLENI---FRHIEEGMPRKEAALRGSREIGFA 433

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V  +M       P+A   G        FA+ +A  ++V+   ++ +   +   +   ++
Sbjct: 434 VVAMTMTLVTVYAPLAFATGRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQS 493

Query: 829 KNAR 832
            ++R
Sbjct: 494 SHSR 497



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 668  KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
             G + ++ +     IY+ +      W      + ++ L +T  L    L G   ++ +  
Sbjct: 845  SGSIYLVFAMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQI 904

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++TL+G      +++ +      +L        + + ++    L   + T+ A  +  +
Sbjct: 905  GLITLVGLITKHGILIVEF---TNQLRDEGKELFEAVVEASVLRLRPILMTTGAMVLGTV 961

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+A+    G          +  G+++    ++F+       I   R K  
Sbjct: 962  PLALSTGAGAESRQQIGWVLVGGLMLGTLLTLFVVPVAYTLIATARKKPG 1011


>gi|311280626|ref|YP_003942857.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter cloacae SCF1]
 gi|308749821|gb|ADO49573.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter cloacae SCF1]
          Length = 1048

 Score =  201 bits (509), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 68/689 (9%), Positives = 173/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------IAITAMY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +     +   S          ITL+F      +    +V  
Sbjct: 50  PGADAETVQNTVTQVIEQNMNGIDNLMYMSSNGDSTGTATITLTFQSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKASSSFLMVVGVINTNGTMSQDDISDYVAANMKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +       N        G        
Sbjct: 170 NGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISALKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTNTE-------------EFGNILLKVNQDGSQVRLRDVAKIELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T +        +          +           
Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALNTADAIRAELKRMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L++ G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAIFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +                   
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIEKGGHGEHKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + +   I+    +   +         + +G      
Sbjct: 516 NRMFDKSTHHYTDSVGNILRSTGRYLLLYIIIVVGMAYLFVRLPSSFLPDEDQGVFLSMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +    ++ +  + E  F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLDEMTDYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RPGEENKVAAITQRAMVRFSQIKDAMVFA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    K++    
Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALNTADAIRAELKRMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A+FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAIFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMALMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L    + G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGVVGALLAATMRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + VLP+ +    G     +    +  G+V A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMVTATI 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|169629963|ref|YP_001703612.1| preprotein translocase subunit SecF [Mycobacterium abscessus ATCC
           19977]
 gi|169241930|emb|CAM62958.1| Probable protein-export membrane protein SecF [Mycobacterium
           abscessus]
          Length = 424

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 134/294 (45%), Gaps = 11/294 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    GIS  F + +I  +   G  +GIDF+GG ++                 ++L  
Sbjct: 64  GKRTLWFGISGAFMVVAILSIAIKGFVFGIDFEGGTKVWFPKGDATVQQTEDVFSQTLGH 123

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ----NTEIVGP 659
              S        +  ++++ +  D+   +++ + +  +     P         +   V  
Sbjct: 124 DAESIVVTGTGDSASIQIRTEKLDNEQSSKLHKALFDRFAPKGPDGKPSIDAISDSDVSE 183

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++  K +  + +  +   IYI +R++ Y +L A+  L+ D+  T G ++L G E  
Sbjct: 184 TWGSQITNKALWALGVFLVLAGIYIAVRYERYMSLAALAALVFDLLVTAGVYSLVGFEVT 243

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D V+V+D++ +N     +T+  ++ +  + ++N+T  RS+ TS+
Sbjct: 244 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTSRRTYAEHANLAVNQTFMRSINTSL 303

Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + I VL +      + G   +   A+    GI+V   SSIF A P+L+ + + 
Sbjct: 304 ISAIPVLSLIVVAIWLLGVGTLKDLALVQLVGILVGTYSSIFFATPLLVALRER 357


>gi|41407142|ref|NP_959978.1| preprotein translocase subunit SecF [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|41395493|gb|AAS03361.1| SecF [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 435

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 132/318 (41%), Gaps = 15/318 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     A + +  R    GIS      +I  +   G  +GIDF GG  + + A
Sbjct: 38  RHSFLSRLYTGTGAFEVVGRRRLWFGISGAIVAVAILSIALRGFTFGIDFNGGTTVSMPA 97

Query: 586 ---NRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEM 637
              +  V  + V+         D       G                   +  +  + + 
Sbjct: 98  AGTHGTVHTAQVQEVFRKTLGTDPESVVVVGNGAAATVQIRSETLTNDQTTKLRNALFDA 157

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K  +  P     +   V      ++  K ++ +++    + +YI +R++ Y  L AI
Sbjct: 158 FGPKGADGKPSKQAISDSQVSETWGDQITDKALIALVVFLALVGLYITVRYERYMTLAAI 217

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSI 755
             +  D+T T G ++L G E     V  +LT++G+S+ D V+V+D++ +N +   +T   
Sbjct: 218 AAMFFDLTVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTRDFQHTNRR 277

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAAS 810
           +F +  + +IN+T  RS+ TS+   + VL +      + G   +   A+    GI+V   
Sbjct: 278 TFAEQANLAINQTFMRSINTSLIGVLPVLALMVVAVWLLGVGTLKDLALVQLVGILVGTY 337

Query: 811 SSIFIAAPILLFIYDWRA 828
           SSIF+A P+L+ + +   
Sbjct: 338 SSIFVATPLLVTLRERTE 355


>gi|51595333|ref|YP_069524.1| acridine/multidrug efflux system protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186894351|ref|YP_001871463.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51588615|emb|CAH20223.1| RND family, acridine/multidrug efflux pump [Yersinia
           pseudotuberculosis IP 32953]
 gi|186697377|gb|ACC88006.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 1050

 Score =  200 bits (508), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITIAANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 PGVGDVQLFGSQ-YAMRIWMDPHKLNNYKLTPVDVINAIKIQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPSGLTVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +++  K            + 
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIKKGDHGPKTGFFGWF 515

Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                                   + V    +    ++  +         + +G     V
Sbjct: 516 NNMFEKSTHHYTDSVANILRSTGRYLVIYLAIVIGMAVLFMRLPSSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L  +    +  +       F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RKGEQNKVPAIVSRASAAFSKIKDGMVFA 664



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 88/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLTVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPIKK 502



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+E ++     +LT IG S  + +++ +  +  M          +   +S+   L 
Sbjct: 915  ATLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLESVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G++ A   +I
Sbjct: 973  PILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018


>gi|166711672|ref|ZP_02242879.1| preprotein translocase subunit SecD [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 614

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 144/520 (27%), Positives = 253/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  ++VD+   +   L  +++++R+ L+   I
Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I +S  +    +     +               +  L    + + I++
Sbjct: 163 AYRSVERRADNSIQVSLGEGADADAARVALAK------------AQPTLTYDVSGQNIAV 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L
Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N++     G              G   L+  +  ++G  +  A+ 
Sbjct: 271 IGATASLEFRAVVDGNAEDAVRSGNIPPEAKVYRVRDTGAPVLLNKRALVTGDQMVSASV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
           + D      V     +  G R F                    T   +       +  + 
Sbjct: 331 SNDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P    A   GK   +       A  LA +L++GSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALPATRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRLGVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +        G  + V+    +    +    E   +              +    +Q  
Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALPATRIAGVFGKNFQTT 409

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         K   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F       L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++L    +  +  I     +  G  +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 529 ELRL---GVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I ++  + + IY  R K   +
Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612



 Score = 41.2 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 30/121 (24%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +    W   L  ++  +  L ALPN   +                          +    
Sbjct: 2   LEFPRWKYFLILLVLAVSALYALPNIYQKDPS---------------------VQITASR 40

Query: 60  -VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
               DD +   +        + LK  GI   ++ +  + + +     + +    D +   
Sbjct: 41  GAQLDDALRSRID-------ADLKAAGITPKAVTKEGDSLMVRLPSLQAQTRANDVLRQQ 93

Query: 119 L 119
           L
Sbjct: 94  L 94


>gi|126031026|pdb|2J8S|A Chain A, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
           Darpin Inhibitors
 gi|126031027|pdb|2J8S|B Chain B, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
           Darpin Inhibitors
 gi|126031028|pdb|2J8S|C Chain C, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
           Darpin Inhibitors
          Length = 1055

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|116667260|pdb|2GIF|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
           Coli
 gi|116667261|pdb|2GIF|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
           Coli
 gi|116667262|pdb|2GIF|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
           Coli
 gi|116667803|pdb|2HRT|A Chain A, Asymmetric Structure Of Trimeric Acrb From Escherichia
           Coli
 gi|116667804|pdb|2HRT|B Chain B, Asymmetric Structure Of Trimeric Acrb From Escherichia
           Coli
 gi|116667805|pdb|2HRT|C Chain C, Asymmetric Structure Of Trimeric Acrb From Escherichia
           Coli
 gi|116667806|pdb|2HRT|D Chain D, Asymmetric Structure Of Trimeric Acrb From Escherichia
           Coli
 gi|116667807|pdb|2HRT|E Chain E, Asymmetric Structure Of Trimeric Acrb From Escherichia
           Coli
 gi|116667808|pdb|2HRT|F Chain F, Asymmetric Structure Of Trimeric Acrb From Escherichia
           Coli
          Length = 1057

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|238898703|ref|YP_002924384.1| multidrug efflux pump [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229466462|gb|ACQ68236.1| multidrug efflux pump [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 1046

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 67/689 (9%), Positives = 173/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G L        +  + ++P+  P               +++  + 
Sbjct: 8   RPIFAWVIALIVMFLGALAI-----TKLPVAQYPAVAPPT-------------ILIVANY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +        ITL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNSIDNLLYMSSNSDSSGNANITLTFNLGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ V   L  + +K  ++        ++      +       E +  +     D +   
Sbjct: 110 KLQRVMPALPQEVQKQGVIVEKSTGNFLMFLAFISENGSMKQEEIADYVASHLKDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +       NN       G        
Sbjct: 170 NGVGDVQLFGAQ-HAMRIWLDPYKLNDFKLTPLDVMNAIQAENNQVAAGELGSAPTIAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +       N+       
Sbjct: 229 QLNASIVAQTRLT-------------SAKEFSQILLKANPDGSQVRLKDVANVELGAEGY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +              L          +           
Sbjct: 276 KLNTLYNGKPATGVGIKLATGANALEASNALKEELIKLEPSFPAGFKVVHPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +LS+LG ++   ++
Sbjct: 336 SIQEVIKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLSVLGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIA 473
            G+VL IGL VD  I+V E +    +    S   +      +       I     +  I 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMHEDGLSPKEASKKSMQQIQGALVGIALVLSSVFIP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   R F++T+  ++++S+  A+ +  A+   I++       +       + 
Sbjct: 456 IAFLEGSTGEIYRQFSVTIVSAMVLSVLVALILTPALCATILKPIDKDKKNKVSAFLGWF 515

Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                                   + +    +     +  L         + +G     V
Sbjct: 516 NHIFEKSSHHYTYSVKHILKGTGRYLIIYLFIVIGMCVLFLRLPTSFLPEEDQGVFVTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L  +    ++ +    +    +      G       V   +     
Sbjct: 576 QLPVGASQERTDKVLSQVTDYFLTQEKDVIKSVLTLSGFGFNGQGQNMGLVFISLNDWSQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T+        +   ++    +  
Sbjct: 636 RTEKKDTVSAVVARASRAFSQIKDGLVFA 664



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 92/250 (36%), Gaps = 6/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +   ++          +        +++  +  L+    K+    
Sbjct: 258 SQVRLKDVANVELGAEGYKLNTLYNGKPATGVGIKLATGANALEASNALKEELIKLEPSF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I++ I  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PAGFKVVHPYDTTPFIKISIQEVIKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  ++ G   N   +  ++  IG  V+D +VV + +     ++   +S ++   KS+
Sbjct: 378 GTFGVLSVLGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMHEDGLSPKEASKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +P+A      G +   F++ +   +V++   ++ +   +   
Sbjct: 436 QQIQGALVGIALVLSSVFIPIAFLEGSTGEIYRQFSVTIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYDWRAKNAR 832
           I     K+ +
Sbjct: 496 ILKPIDKDKK 505



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 83/251 (33%), Gaps = 12/251 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +     + V  S   +         +   N         +       
Sbjct: 777  PFRMLPEDINHWYVRNNQGQMVPFSSFSTTQWKYNSPRLERYNGFPSMKIQGQAAPGKST 836

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + E+ KK    I    T  + +          +        IS I + + +   
Sbjct: 837  GEAMALMQELAKKLPNGIGYDWTGVSFQERMSANQSLFLY------AISLIFVFLCLAAL 890

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      I  + + +  +L    L G++ ++    ++LT IG S  + +++ +  + 
Sbjct: 891  YESWSIPFSVIMVVPVGVLGSLLAAYLGGLDNDVYFQVSLLTTIGLSAKNAILIIEFSKN 950

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
             ++         +    ++   L   + TS+A  + VLP+A+    G     +  + +  
Sbjct: 951  LIQKEGKG--LIEATLSAVRMRLRPILMTSLAFMLGVLPLAMSHGAGSGAQHALGVGVIG 1008

Query: 804  GIVVAASSSIF 814
            G++ +   +I+
Sbjct: 1009 GMIASTVLAIY 1019


>gi|319427316|gb|ADV55390.1| protein-export membrane protein SecD [Shewanella putrefaciens 200]
          Length = 604

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 162/527 (30%), Positives = 276/527 (52%), Gaps = 34/527 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  ++  P  L  S+    PS +       I LGLDLRGG   +L+VD +       +
Sbjct: 94  TLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVEPVYQTQAE 153

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
              D LR F++++ I   S+   Q+ ++ ++  D+  +  +   +               
Sbjct: 154 ALVDSLRQFIREQNIRGASVHLDQSCQLNVTLPDNDARAAVRQMMKQSYPNWQ------- 206

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
               L    +  + I LSQ    ++ +  ++Q+++++R RI+++GI+E+ +QR G HRI 
Sbjct: 207 ----LSNADDAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGEHRIR 262

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           I+LPG QDP+  + ++G TA ++F +V               L+D  GN   V     + 
Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLKDKSGNSVYVGRTPVLG 317

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306
           G H+  A A+         V+I+ D +G ++  E +R NIGKP+A               
Sbjct: 318 GDHIVDARASIGEMGM-AEVNINLDRVGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAK 376

Query: 307 --------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                      Q+    + +I+G  T + A  LA +LRAGS+   + IVEER +G  LG+
Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
           ++I  G  A+  G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A LTLP I
Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG+VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STIFD+N T +I  VVL
Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +  G G ++GFA+T+GL +L SMFT I   RA++  +      + + 
Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603



 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    + +          +    ++ L       G    Q
Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I  G   + +     L+++ + ++  
Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID   +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  ++  +Y   A  
Sbjct: 581 TGIFASRALINLVYGRDASR 600


>gi|152969016|ref|YP_001334125.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238893431|ref|YP_002918165.1| acriflavine resistance protein B [Klebsiella pneumoniae NTUH-K2044]
 gi|330002951|ref|ZP_08304495.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3]
 gi|150953865|gb|ABR75895.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238545747|dbj|BAH62098.1| acriflavine resistance protein B [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|328537107|gb|EGF63385.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3]
          Length = 1048

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 68/689 (9%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLSIL-----KLPVAQYPTIAPPA-------------ISITAMY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117
                  +Q      +   +      ++      +     ITL+F      +    +V  
Sbjct: 50  PGADAETVQNTVTQVIEQNMNGIDHLMYMSSNGDSTGTATITLTFESGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +         +++          +  + S  +     D I  +
Sbjct: 110 KLALATPLLPQEVQQQGISVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISALKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTNTE-------------EFGNILLKVNQDGSQVRLRDVAKIELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFFPSGMKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +++  +  S         + 
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGSHGATTGFFGWF 515

Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                                   + V   I+    +   +         + +G      
Sbjct: 516 NRMFDKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAWLFVRLPSSFLPDEDQGVFLSMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +    ++ +  + E  F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLDEMTNYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + ++           ++    +  
Sbjct: 636 RPGEENKVEAITARAMGYFSQIKDAMVFA 664



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +     K+    
Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMALMEELAGKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|188576289|ref|YP_001913218.1| preprotein translocase subunit SecD [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188520741|gb|ACD58686.1| protein-export membrane protein SecD [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 614

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 144/520 (27%), Positives = 253/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  ++VD+   +   L  +++++R+ L+   I
Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I +S  +    +     +               +  L    + + I++
Sbjct: 163 AYHSVERRADNSIQVSLGEGADADAARVTLAK------------AQPTLTYDVSGQNIAV 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L
Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N++     G              G   L+  +  ++G  +  A+ 
Sbjct: 271 IGATASLEFRAVVDGNAEDAVRSGNIPPEAKVYRVRDTGAPVLLNKRALVTGDQMVSASV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
           + D      V     +  G R F                    T   +       +  + 
Sbjct: 331 SNDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P    A   GK   +       A  LA +L++GSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALPATRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRLGVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610



 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +        G  + V+    +    +    E   +              +    +Q  
Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALPATRIAGVFGKNFQTT 409

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         K   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F       L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++L    +  +  I     +  G  +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 529 ELRL---GVPPKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I ++  + + IY  R K   +
Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612



 Score = 41.6 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 30/121 (24%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +    W   L  ++  +  L ALPN   +                          +    
Sbjct: 2   LEFPRWKYFLILLVLAVSALYALPNIYQKDPS---------------------VQITASR 40

Query: 60  -VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
               DD +   +        + LK  GI   ++ +  + + +     + +    D +   
Sbjct: 41  GAQLDDALRSRID-------ADLKAAGITPKAVTKEGDSLMVRLPSLQAQTRANDVLRQQ 93

Query: 119 L 119
           L
Sbjct: 94  L 94


>gi|330950117|gb|EGH50377.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae Cit 7]
          Length = 665

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 69/686 (10%), Positives = 182/686 (26%), Gaps = 43/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKDAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+    A+   +++    +         F      
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVVVALIFTPALCATMLKPIDHEKHGQPKRGFFGWFNRT 519

Query: 538 IAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                          ++ ++      IL     + +       +  +   G+    +   
Sbjct: 520 FDRSVLSYERGVGNMLKHKWPAYLGYILICAGMVFMFMRIPAAFLPEEDQGVIFAQIQTP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +       +  +     K+      +        + +  ++ K   E   
Sbjct: 580 AGSSTARTQEVIDQMREYLLTKESGAVKSVFSVNGFNFAGRGQSSAIAFVMLKPWEERDS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
            +++             L    +  V
Sbjct: 640 NNSVFELAKRAQGYFFSLRDAMVFAV 665



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S RD   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEEKLSPRDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 TQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVVVALIFTPAL 492


>gi|254160531|ref|YP_003043639.1| multidrug efflux system protein [Escherichia coli B str. REL606]
 gi|253972432|gb|ACT38103.1| multidrug efflux system protein [Escherichia coli B str. REL606]
          Length = 1049

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFTWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDIYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|331269247|ref|YP_004395739.1| protein-export membrane protein SecF [Clostridium botulinum
           BKT015925]
 gi|329125797|gb|AEB75742.1| protein-export membrane protein SecF [Clostridium botulinum
           BKT015925]
          Length = 289

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 80/286 (27%), Positives = 145/286 (50%), Gaps = 5/286 (1%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS++  +  +  L   GLNYGIDFKGG  + +      +   ++   + +   
Sbjct: 7   KTKIWFAISLIVIVIGMSFLGVKGLNYGIDFKGGTIVTIEMGNSFN-QKIKEQADIIIKK 65

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                +        + ++    DS +  ++   +K K    +  + + +   VGP +  E
Sbjct: 66  YDKTASSYIANKTQLEIKSNNLDSGSINKMFGELKTKYK--LKDNALVSQNKVGPSVGNE 123

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L +K +  ++I+ IAMLIYI  RF+  F + AI  LI DI  TLG +A+  I  N   +A
Sbjct: 124 LKKKSLGALVIATIAMLIYIGFRFEIKFGVAAILGLIHDILITLGVYAVTQIPVNTPFIA 183

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +V++DR+R+N +         ++++ SI +T+ RS+ T +    +++
Sbjct: 184 AMLTIVGYSINDTIVIFDRIRENKRKL-RGKDMVEIVNLSITQTMSRSINTVLTTLFTIV 242

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            + V+    +  F  P+  GIV  A SSIF+++PI + +  +    
Sbjct: 243 AVYVF-VPAVRDFTFPLIIGIVCGAYSSIFVSSPIWILLRKFGKNK 287


>gi|327393005|dbj|BAK10427.1| acriflavine resistance protein B AcrB [Pantoea ananatis AJ13355]
          Length = 1049

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 66/565 (11%), Positives = 156/565 (27%), Gaps = 46/565 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  L     +  ++++P+  P               + ++ + 
Sbjct: 8   RPIFAWVLAIIVMLAGALSIL-----KLPIEQYPNVAPPA-------------IEIQANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S       +T+SF      +    +V  
Sbjct: 50  PGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSDSSGALTLTISFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    D    +  + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGIQVKKSSSSFLMVAGFISDDGSMNQNDISDYVASNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DPS+L     T   +       N        G        
Sbjct: 170 PGVGDTQVFGAQ-YAMRIWMDPSKLNNYQLTPVDVINALKTQNAQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTST-------------KEFGNILLKVNADGSQVRLRDVAQIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T E      A L+         +           
Sbjct: 276 EIIARYNGKPASGIGIKLATGANALNTAEAVKAELAKLQPTFPAGMKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++S  G ++   ++
Sbjct: 336 SIFEVVKTLMEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMVEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+         +K +      +   
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPVKKGDHGKTTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                   F ++    V        
Sbjct: 511 FFGWFNRLFDKSTHHYVDSVGHIVR 535



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 87/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +      + +        +++     ++    K+    
Sbjct: 258 SQVRLRDVAQIELGGENYEIIARYNGKPASGIGIKLATGANALNTAEAVKAELAKLQPTF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PAGMKVVYPYDTTPFVKISIFEVVKTLMEAILLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GGS       F+I +   + ++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPVKK 502



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L T    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMNLMEELASKLPTGIGFDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L F  L G+  ++  V  +LT +G S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLFTTLRGLSNDVYFVVGLLTTVGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + VLP+A+    G     +    +  G+V A +
Sbjct: 958  G--LVEATLEACRMRLRPILMTSLAFILGVLPLAISTGAGSGAQNAVGTGVMGGMVTATA 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|332162560|ref|YP_004299137.1| aminoglycoside/multidrug efflux system [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666790|gb|ADZ43434.1| aminoglycoside/multidrug efflux system [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 1043

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 76/592 (12%), Positives = 164/592 (27%), Gaps = 46/592 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + ++++             + +  +     D +   
Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT  +       N+       G     D+ 
Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E      A L           +          
Sbjct: 276 DYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPHGLEAKIAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +     S+    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMSQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+         +K I          
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIKPGHHHAKRG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   F R               S+  +  + L  G      I+L    
Sbjct: 511 FFGWFNRMFDRNAHRYERGVAQVLHRSVRYMLLYLLLLGGLALLFIKLPTSF 562



 Score = 86.7 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 88/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +    +++    ++T   P 
Sbjct: 260 VTLGDVAKIEMGAEKYDYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+++
Sbjct: 380 FAILSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++    L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRLRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029


>gi|15800191|ref|NP_286203.1| acridine efflux pump [Escherichia coli O157:H7 EDL933]
 gi|15829769|ref|NP_308542.1| acridine efflux pump [Escherichia coli O157:H7 str. Sakai]
 gi|168747862|ref|ZP_02772884.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754567|ref|ZP_02779574.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760383|ref|ZP_02785390.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768417|ref|ZP_02793424.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4486]
 gi|168777158|ref|ZP_02802165.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778955|ref|ZP_02803962.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786313|ref|ZP_02811320.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC869]
 gi|168798026|ref|ZP_02823033.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC508]
 gi|195936025|ref|ZP_03081407.1| acridine efflux pump [Escherichia coli O157:H7 str. EC4024]
 gi|208806422|ref|ZP_03248759.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208814811|ref|ZP_03255990.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208823152|ref|ZP_03263470.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396368|ref|YP_002269112.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4115]
 gi|217324468|ref|ZP_03440552.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791645|ref|YP_003076482.1| multidrug efflux system protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261223944|ref|ZP_05938225.1| multidrug efflux system protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256342|ref|ZP_05948875.1| multidrug efflux system protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12513329|gb|AAG54811.1|AE005225_5 acridine efflux pump [Escherichia coli O157:H7 str. EDL933]
 gi|13359972|dbj|BAB33938.1| acridine efflux pump [Escherichia coli O157:H7 str. Sakai]
 gi|187767556|gb|EDU31400.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017602|gb|EDU55724.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003140|gb|EDU72126.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357953|gb|EDU76372.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362455|gb|EDU80874.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369134|gb|EDU87550.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373626|gb|EDU92042.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC869]
 gi|189379245|gb|EDU97661.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC508]
 gi|208726223|gb|EDZ75824.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731459|gb|EDZ80147.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737345|gb|EDZ85029.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157768|gb|ACI35201.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           EC4115]
 gi|209778470|gb|ACI87547.1| acridine efflux pump [Escherichia coli]
 gi|209778472|gb|ACI87548.1| acridine efflux pump [Escherichia coli]
 gi|209778476|gb|ACI87550.1| acridine efflux pump [Escherichia coli]
 gi|217320689|gb|EEC29113.1| acriflavine resistance protein B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591045|gb|ACT70406.1| multidrug efflux system protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|320192880|gb|EFW67520.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. EC1212]
 gi|326341228|gb|EGD65020.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. 1044]
 gi|326345997|gb|EGD69736.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. 1125]
          Length = 1049

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSIEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|310766812|gb|ADP11762.1| preprotein translocase subunit SecD [Erwinia sp. Ejp617]
          Length = 604

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 158/518 (30%), Positives = 278/518 (53%), Gaps = 37/518 (7%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + + +    + LGLDLRGG H ++EVD D  +        D LRS L+++ I   ++R
Sbjct: 99  PAWLAMLSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYVNVR 158

Query: 93  QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +  N  + + F D + ++     +T   +             ++  +    ++ V+S   
Sbjct: 159 KTANYGMEIRFRDDKARDEAVSYLTTRHR-----------DMVINGSGSNALTAVMSDER 207

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++LG TA 
Sbjct: 208 MREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATAT 267

Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  +        G            D    ++  +V ++G H+  +T++ D    
Sbjct: 268 LEFRLVNTSVDATAAANGRVPGDSEVKNTRDKQPVVLYKRVILTGDHITDSTSSNDEYN- 326

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
           +P V+IS D  G       T+D++GK +A +      +                      
Sbjct: 327 QPQVNISLDSAGGNIMSNFTKDSVGKAMATLFVEYKDSGKKDANGRAILEKHEEVINVAN 386

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  +G+ +I +G  A 
Sbjct: 387 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEAC 446

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GL+  ++FM+V Y K+GLVA  ++  N++L + ++SLL  ATLT+P IAGIVL + +A
Sbjct: 447 LWGLIASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA 506

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  ++L+  G G+++G
Sbjct: 507 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 566

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 567 FAITTAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI 604



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 96/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++        N    ++ L       G +         +  +   
Sbjct: 358 FVEYKDSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++ + +K  F L A + L+ ++
Sbjct: 418 LIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK-KFGLVATSALLANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +
Sbjct: 477 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    V  ++   I V+ +   G   I  FAI  A G+  +  ++I     I+  +
Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLM 593

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 594 YGGKRINK 601


>gi|294491588|gb|ADE90344.1| acriflavine resistance protein B [Escherichia coli IHE3034]
          Length = 1049

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLATFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 ATFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|157146913|ref|YP_001454232.1| hypothetical protein CKO_02689 [Citrobacter koseri ATCC BAA-895]
 gi|157084118|gb|ABV13796.1| hypothetical protein CKO_02689 [Citrobacter koseri ATCC BAA-895]
          Length = 1048

 Score =  200 bits (508), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 68/685 (9%), Positives = 173/685 (25%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMDPTKLNNFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        I           
Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNQDGSQVRLRDVARIELGGENYDIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +          +           S   
Sbjct: 280 KFNGQPASGLGIKLATGANALDTANAIRAELKKMEPFFPSGMKIVYPYDTTPFVTISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLSAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++ +S+  A+ +  A+   +                   +   
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGSHGSTKGFFGWFNNMF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + +   I+    +   +         + +G          
Sbjct: 520 EKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLSMAQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +    ++ +  + E  F V      G           +K        
Sbjct: 580 GATQERTQKVLDEMTDYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGD 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            + +            ++    +  
Sbjct: 640 ENKVDAITGRAMGAFSQIKDAMVFA 664



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVARIELGGENYDIIAKFNGQPASGLGIKLATGANALDTANAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGMKIVYPYDTTPFVTISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLSAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|320176564|gb|EFW51608.1| RND efflux system, inner membrane transporter CmeB [Shigella
           dysenteriae CDC 74-1112]
          Length = 1049

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 70/690 (10%), Positives = 177/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIF-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|126658187|ref|ZP_01729338.1| cation or drug efflux system protein [Cyanothece sp. CCY0110]
 gi|126620558|gb|EAZ91276.1| cation or drug efflux system protein [Cyanothece sp. CCY0110]
          Length = 1041

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 80/595 (13%), Positives = 178/595 (29%), Gaps = 42/595 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +GL+           LD+FP   P             + + +E  
Sbjct: 9   KRPVFSSVCALLILLVGLISLF-----NLPLDQFPEIAP-------------TRVQVEST 50

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
            +      ++    + L   +        I   S     + IT++F  SR  +  A  V 
Sbjct: 51  YNGASAEVVENAVTNILERQINGVEGLKYISSSSSNSGTSSITVTFDSSRDPDLAAVDVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V S+L    ++  +  + + +  ++      D      +  S    +  +D +  
Sbjct: 111 NQVSVVQSQLPDAVQRTGVQVSRQSDSLLLGIGLYSDNNRYDNVFLSNYADQYLVDALKR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    DP++L     TT  +       N        G     + 
Sbjct: 171 LDGVGNVRIFGERRYAMRLWLDPNKLASRGLTTQDVVNALSEQNLQVGAGKIGAEPAPEG 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +    ++              +  +    +   +      +             
Sbjct: 231 QQFQFDLRAISQL-------------KEPKEFENLLLKTDENGGLVYFKDVGRAELGAED 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                              +   +     +        L     P    +V         
Sbjct: 278 YSSFLRFRGQEAVGMGIYQRTGSNALEVAKKVEQEMDRLSEFFPPDLQYVVAFDTTQFVE 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S S    T  +  GLV+IV+ + +   +  L+   +I L ++ T A + L   ++   +
Sbjct: 338 ESLSEVVKTLIMAVGLVIIVILIFLQNWRTTLIPALTIPLALVGTFAFIKLFDFSINSLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL--DMGFSRAYSTIFDSNITALIAT 474
           + G+ L  G+ VD  I+V E+I            +         + + I  S +   +  
Sbjct: 398 LFGLTLATGMVVDDAIIVVEQINRYIEDEDMSPQAAASKAMGELSSAVIATSLVLMAVFI 457

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V FF G      R FA+T+  SI+IS F A+++  ++   ++   +   +     + F 
Sbjct: 458 PVAFFPGTTGALYRQFALTIAFSIVISTFLALTLTPSLCALLLEKGQQ--LPGFLGTIFN 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                +     + R     +S L  +     +    +   +  K         ++
Sbjct: 516 QFNHFLDWVKAQYRRSLHTLSNLRLVVVGVFVVLLLVTAWLYTKVPTAFTPEEDQ 570



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 8/223 (3%)

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
           Q   G   +          +    + ++ + +     +      +T     +   E+++ 
Sbjct: 287 QEAVGMGIYQRTGSNALEVAKKVEQEMDRLSEFFPPDLQYVVAFDTTQFVEESLSEVVKT 346

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I+ V +  I +LI++     W   L    T+ L +  T  F  LF    N   +  +  
Sbjct: 347 LIMAVGLVIIVILIFLQ---NWRTTLIPALTIPLALVGTFAFIKLFDFSINSLTLFGLTL 403

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             G  V+D ++V +++  N  +    +S +    K++ E     + TS+      +P+A 
Sbjct: 404 ATGMVVDDAIIVVEQI--NRYIEDEDMSPQAAASKAMGELSSAVIATSLVLMAVFIPVAF 461

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + G+       FA+ +AF IV++   ++ +   +   + +   
Sbjct: 462 FPGTTGALYRQFALTIAFSIVISTFLALTLTPSLCALLLEKGQ 504



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I  + L I   L    L G   ++     ++ LIG +  + +++ +      +L  
Sbjct: 898  PFIIILAVPLAILGALTAQLLRGFANDVYCQIGLVMLIGLASKNAILIVEFAN---QLRD 954

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +       ++  E L   + T+++  + + P+ V    G     S    +  G++VA+
Sbjct: 955  EGLPLVKATIEAAQERLRPILMTAVSTLLGIFPLVVATGAGSGSRQSLGTAVFGGMLVAS 1014

Query: 810  SSSIFIAAPILLFIYDWRAK 829
              S+F+   + + I     K
Sbjct: 1015 FLSLFVVPILYIVIKMTTEK 1034


>gi|171057036|ref|YP_001789385.1| preprotein translocase subunit SecF [Leptothrix cholodnii SP-6]
 gi|170774481|gb|ACB32620.1| protein-export membrane protein SecF [Leptothrix cholodnii SP-6]
          Length = 344

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 89/324 (27%), Positives = 158/324 (48%), Gaps = 27/324 (8%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS L    ++  L T GL+  I+F GG  +     +  D
Sbjct: 1   MEFFRFRRDIPFMRHALVFNVISFLTFAAAVFFLITRGLHLSIEFTGGTVIETEYAQSAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG------------------------ 626
           ++ VR  +E++ +G++  Q F   ++ L+RL  + G                        
Sbjct: 61  IARVRGTIETMGLGEVQVQKFGTSRDVLIRLPLREGVKQNELVGRVFTQLCTAEQGTVSQ 120

Query: 627 --DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
              +  +   +     +         +  +E VGP++ +EL   G   +    + ++IY+
Sbjct: 121 QQTTTDKGETISRQVCQTAAGAEPLKLSRSEFVGPQVGKELAEDGAKALAFVIVGIMIYL 180

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            +RF+W FA+ AI   + D+   LGFFA F  EF+L+ +AAVL ++GYSVN+ VV++DR+
Sbjct: 181 ALRFEWKFAVAAIIANLHDVIIILGFFAYFQWEFSLSVLAAVLAVLGYSVNESVVIFDRI 240

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+  + Y   ++  ++ID +I  T+ R++ T  +  + VL M ++GG  +  FA+ +  G
Sbjct: 241 REAFRRYRK-MTTVEVIDHAITSTMSRTIITHGSTQMMVLSMLLFGGPTLHYFALALTIG 299

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I+    SS+F+AA I +++   R 
Sbjct: 300 ILFGIYSSVFVAAAIAMWLGVKRE 323


>gi|332188473|ref|ZP_08390195.1| export membrane protein SecF [Sphingomonas sp. S17]
 gi|332011485|gb|EGI53568.1| export membrane protein SecF [Sphingomonas sp. S17]
          Length = 326

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 97/289 (33%), Positives = 165/289 (57%), Gaps = 2/289 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD   I F+R R W  G+++  ++ ++ + F  GLN G+DF GG+ +      
Sbjct: 1   MRLLKLVPDNTNIDFVRLRGWAFGLTLALTLLAVGVTFARGLNLGVDFVGGLMIEEKFPT 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG-DSVAQTRVLEMVKKKITEIV 646
           P     VRS ++ L +G+ + Q     +   +RL      D  A   V+  V+  + +  
Sbjct: 61  PPSADRVRSVVDGLGVGEANIQTVGDGRTISIRLPVPESKDEGATNAVVRKVEAALGQQF 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P +T    + V  K+S ELI+ G++ V+++ + + ++   RF+W F +  I  ++ D+  
Sbjct: 121 PGATFSRYDTVSGKVSGELIKHGVLAVVLAILGIGLFAIFRFEWQFGVSTIVAIVHDLLV 180

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           TLGFFA+   E +LT +AA LT+IGYS+NDK+V+ DR+R+NM+ Y   +  R++I+ S+N
Sbjct: 181 TLGFFAITQFELDLTIIAAFLTIIGYSINDKIVIDDRIRENMRRYRK-MDMREIINLSVN 239

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           ETL R+V TS+   +++  + + GG V+  F   M  GIVV   SSI++
Sbjct: 240 ETLPRTVMTSVTILLALTALLLLGGHVLRGFTAAMILGIVVGTYSSIYV 288


>gi|261823345|ref|YP_003261451.1| aminoglycoside/multidrug efflux system [Pectobacterium wasabiae
           WPP163]
 gi|261607358|gb|ACX89844.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pectobacterium wasabiae WPP163]
          Length = 1036

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 183/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           L+++P   P               + +    
Sbjct: 8   RPIFAWVLAILLSLCGMLAI-----KSLPLEQYPDLAPP-------------SVRITASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q +I L+F      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLMYMSSDSSNTGQARIMLTFEAGTDPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + +I++             + S  +     + I   
Sbjct: 110 QLQSATRKLPQDVQQQGVTVSKTGDTNILMVAFVSTDGSMDKQDISDYVATNIQEPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     TT+ +       N+       G     D+ 
Sbjct: 170 SGVGEVDSYGSQ-YAMRIWLDPAKLMDYALTTSDVVRAIESQNSQVSVGQVGGVPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSAVTLANVAEVELGSERY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DFLSRFNGQAASGLGVKLASGANELETDKRVRERIEELSQYFPHGLEAKIAFETSPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G +L   ++
Sbjct: 336 SITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGFSLNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPRDATRKSMGQVQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  S+++S+  A+ +  A+   +++               + 
Sbjct: 456 MAFFGGTTGAIYRQFSVTIVTSMILSVLVAMILTPALCATLLKPLAKGQHPGRKGFFGWF 515

Query: 534 IPDCIAIQFMRAR----------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                       R           W +    +  I +             + +G     V
Sbjct: 516 NRSFTRTSLGYERGVGKILVNSGRWLLLYMGIIGIMAFLFFRLPTSFLPQEDRGVFTTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +  ++   ++ +       F        G+     R+   +K    
Sbjct: 576 QLPPGSTQQQTLQVVNKIEQYYLTQEKDTVTSVFSTIGSGPGGNGQNVARLFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              P S+         K  R +    +  
Sbjct: 636 RTTPESSSFAVIERATKEFRAIKEARVFA 664



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +  D   +      + L        + +   + +    +++++  P 
Sbjct: 260 VTLANVAEVELGSERYDFLSRFNGQAASGLGVKLASGANELETDKRVRERIEELSQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +  + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAFETSPFVKASITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    +S RD   KS+ +
Sbjct: 380 FAVLYAFGFSLNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPRDATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +GG+       F++ +   ++++   ++ +   +   + 
Sbjct: 438 VQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVTSMILSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 8/167 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G  +   L       +  IS + + + +   ++ W      +  + + +   L 
Sbjct: 853  FGVEWTGMSLQERLSGAQAPALYAISLLVVFLCLAALYESWTVPFSVMLVVPMGVLGALV 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 G+E ++     +LT++G S  + +++ +   +   +        +   ++  + L
Sbjct: 913  ATWARGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---MNQKGKDLVEATLEASRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
               + TS+A    VLPMA     G +   +    +  G++ A   +I
Sbjct: 970  RPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVIGGMLAATFLAI 1016


>gi|218511369|gb|ACK77685.1| multidrug resistance efflux pump [uncultured bacterium]
          Length = 1048

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 160/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIVMLAGVLAIM-----KLPIAQYPTIAPPA-------------VSISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQIIEQNMNGIDNLMYMSSTSDSSGSVTITLTFDSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  L         ++++    D       + +  +     D I  S
Sbjct: 110 KLSLATPLLPQEVQQQGLKVEKSSSSFLMVAGFVSDDPNMTQDDIADYVASNIKDPISRS 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     TT  ++      NN       G        
Sbjct: 170 SGVGEVQLFGAQ-YAMRIWLDPNKLNNYQLTTTDVTSAITEQNNQIAAGQLGGLPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +       +I +     
Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGKILLKVNTDGSQVRLRDVAHIERGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A +          +           
Sbjct: 276 AVTARYNGKPAAGLGIKLATGANALNTAKGVKDELAKMAPFFPQGMKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+         +K I          
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPIPKGDHGVKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++              +   L  +
Sbjct: 511 FFGWFNRMFEKSTHHYTDSVGNILRSTGRYLIIY 544



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   ++ +        L        +++   + ++    K+    
Sbjct: 258 SQVRLRDVAHIERGAESYAVTARYNGKPAAGLGIKLATGANALNTAKGVKDELAKMAPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + + +++  + +   L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS + + + +   ++ W   
Sbjct: 838  EAMNLMEQLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISILVVFLCLAALYESWSVP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  L L +   L    + G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVLPLGVIGALLAATMRGMNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + VLP+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|17230635|ref|NP_487183.1| RND multidrug efflux transporter [Nostoc sp. PCC 7120]
 gi|17132238|dbj|BAB74842.1| RND multidrug efflux transporter [Nostoc sp. PCC 7120]
          Length = 1057

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 83/686 (12%), Positives = 195/686 (28%), Gaps = 43/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   +I  +G +       P    DR+P   P   +          +      
Sbjct: 8   RRPVFTSVCAIIILLVGAISI-----PTLPTDRYPEISPTQIV---------VNANYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++       S      + IT++F  SR K+  A  V   + 
Sbjct: 54  SAEVVENTVTNILERQINGVQGMKYMTSSSSNDGTSTITITFDPSRDKDIAAVDVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L    ++  +  + +    ++      +Q   + +  S    +  +D +   +  
Sbjct: 114 IAQPQLPEAVQRTGVTVSKQSNNILLAMGLYSEQQEYNTVFLSNYADQYIVDALKRLDGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP+RL     T   +       N        G +        Q
Sbjct: 174 GEARIFGERRYAMRLWLDPNRLASRKLTAQDVIDAINEQNIQVGVGQIGQQPSLPDQMYQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++ +  +S             +  +    +                            
Sbjct: 234 IDLQARGRLS-------------EATEFADMVIKTGSDGTLIKLKDVGRAELGAENYSSF 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +     +      A L     P     V          S +
Sbjct: 281 LRFRGNEGVGIGIFPTPGSNALEVSKAVKTEMARLAQSFPPGLKYQVAFDTTLFVEESLA 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+F+ +   +  L+   +I L +I T A + + G ++   ++ G+
Sbjct: 341 EVVKTLIEALILVVLVIFIFLQDWRTTLIPVITIPLTLIGTFAFIKVFGFSINTLTLFGL 400

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            L  GL VD  I+V E I     ++  S   +        +  +  +++  +   V + F
Sbjct: 401 TLATGLVVDDAIIVVENISRLIEQEGMSPRQAASESMRELFGAVIATSLVLMAVFVPVAF 460

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---------IDINP 527
           F    G   + FA+T+  S++IS F A+++  ++   ++R  +            ++   
Sbjct: 461 FPGTTGQIYKQFALTIAFSMVISTFLALTLTPSLSALLLRRGQRPRGWLGKIFHQVNRFL 520

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +           +      ++     L         + +G     +    
Sbjct: 521 DWMRRGYERSLNFLVKVRAIVVLLFLASIALTGWVYLSVPTAFIPEEDQGYFITIIQGPE 580

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L+   + +  ++   +      G   F +      G+S     +   ++       P
Sbjct: 581 GVSLNYTSNVMAQVEKEILKLPEVTG--TFAIGGFSFSGNSANSGVIFTTLQPWDERQQP 638

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
             +          +   +    I  V
Sbjct: 639 GQSAPEIIGKLAGVFSNITEARIFPV 664



 Score = 94.0 bits (231), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 93/247 (37%), Gaps = 6/247 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L  V       +      +    E   +        +++  ++ ++    ++ +  P 
Sbjct: 262 IKLKDVGRAELGAENYSSFLRFRGNEGVGIGIFPTPGSNALEVSKAVKTEMARLAQSFPP 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                          E + + +  +I + I +++ I+I    W   L  + T+ L +  T
Sbjct: 322 GLKYQVAFDTTLFVEESLAEVVKTLIEALILVVLVIFIFLQDWRTTLIPVITIPLTLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             F  +FG   N   +  +    G  V+D ++V + +  +  +    +S R    +S+ E
Sbjct: 382 FAFIKVFGFSINTLTLFGLTLATGLVVDDAIIVVENI--SRLIEQEGMSPRQAASESMRE 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  + TS+      +P+A +    G +   FA+ +AF +V++   ++ +   +   + 
Sbjct: 440 LFGAVIATSLVLMAVFVPVAFFPGTTGQIYKQFALTIAFSMVISTFLALTLTPSLSALLL 499

Query: 825 DWRAKNA 831
               +  
Sbjct: 500 RRGQRPR 506



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 77/207 (37%), Gaps = 11/207 (5%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             S   T  +E + K++                 +       +  +   +  + + + +  
Sbjct: 834  SSGQATTAMEKLAKEVLPASMGYEWSGITAEEQESGG----QAPLIFGLGLVFVFLVLAA 889

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +++ +   L  + ++ L I   L    L G+  ++     ++ LIG +  + +++ +   
Sbjct: 890  QYENYVDPLIIMLSVPLAILGALSAQWLRGLSNDVFCQVGLVMLIGLASKNAILIVEFAN 949

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMA 802
               +L    +       ++  E L   + TS++  + V P+      G +   S    + 
Sbjct: 950  ---QLREGGLPIIKATVQASQERLRPILMTSLSFILGVWPLINPIGAGAASRKSLGTAVV 1006

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++V+   S+F+   + + I   R +
Sbjct: 1007 GGMIVSTVLSLFVVPILYIVISKIRDR 1033


>gi|323170558|gb|EFZ56208.1| inner membrane protein [Escherichia coli LT-68]
          Length = 1049

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSIEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|303249153|ref|ZP_07335392.1| protein-export membrane protein SecF [Desulfovibrio fructosovorans
           JJ]
 gi|302489426|gb|EFL49374.1| protein-export membrane protein SecF [Desulfovibrio fructosovorans
           JJ]
          Length = 365

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 154/346 (44%), Gaps = 48/346 (13%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVDL 591
           LI     I F++ R     +S    +     L   G   YG+DF GG+ + V   + +D+
Sbjct: 5   LIRPGTKINFLKYRKLAYLVSAAVIVAGFVSLAVKGGPRYGVDFAGGLSIQVRFAKAMDV 64

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK-ITEIVPLST 650
           + +    ++  + +++ Q F   +     ++    D   +     +              
Sbjct: 65  AELTKAADAAGLSNVAVQRFGQAEANEYLIRASDQDINQENVRTAVETALGKAFPNAGLD 124

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF---------------------- 688
           +Q  E+VGPK+  +L  K +  +  S + + IYI  RF                      
Sbjct: 125 VQRLEMVGPKVGADLRGKALEAIFYSVLLIAIYISGRFEKRWMAAGMMAAGLAGGIYVLK 184

Query: 689 ------------------------KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                                   +  +ALGA+   + D   T+G F+L   EF+LT VA
Sbjct: 185 LFGASTVWLIVAAMIITMALCYVLRLKYALGAVVADLHDALITIGLFSLLDKEFDLTIVA 244

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND ++VYDR+R+  +    ++ F  +I+ SINETL R++ T+    I+V 
Sbjct: 245 ALLTILGYSLNDTIIVYDRIREKNRNVGKTLPFEQVINISINETLSRTILTAGTTLITVA 304

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +  +GG+VI  FA+ M  GI+    SSIF+A+PILL +       
Sbjct: 305 CLYFFGGAVIHDFALAMLIGILAGTYSSIFVASPILLDLGSGLKPR 350


>gi|301644459|ref|ZP_07244456.1| putative ATP synthase F0, A subunit [Escherichia coli MS 146-1]
 gi|301077204|gb|EFK92010.1| putative ATP synthase F0, A subunit [Escherichia coli MS 146-1]
          Length = 1037

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTMTQVIEHNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    ++ 
Sbjct: 636 RDSKTGTSFAIIERATKAFNQIKEARVIA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +I+      + +        R
Sbjct: 993  GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|315928005|gb|EFV07325.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 262

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 75/233 (32%), Positives = 130/233 (55%), Gaps = 3/233 (1%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + +R  LE+            G    +       G +   +  +      + +      +
Sbjct: 1   TQIREILENQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEV 58

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  ++VGPK+  EL  KG++ + +S IA+LIYI +RF+W FAL AI + I D+  TLG  
Sbjct: 59  RRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAI 118

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +LF I+ NL  +AAVLT++GYS+ND ++++DR+R+ +K  +       +I++S++ TL R
Sbjct: 119 SLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSR 177

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +V TS     +V+ +  +GG +I  F++ +  GI+    SSIF+A+P LL+  
Sbjct: 178 TVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGTLSSIFVASPTLLWFK 230


>gi|226194757|ref|ZP_03790349.1| outer membrane efflux protein OprC [Burkholderia pseudomallei
           Pakistan 9]
 gi|225933101|gb|EEH29096.1| outer membrane efflux protein OprC [Burkholderia pseudomallei
           Pakistan 9]
          Length = 1576

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 154/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLAGMIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPNDSYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   T   +       N      + G          Q 
Sbjct: 176 QVQLWGAGDYAMRVWLDPQKVAQRNLTADDVVRAIREQNVQVAAGVIGASPTLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQNED-------------EFGDIVVKTAPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLAISDEVRKTMAELKQDFPAGVDYRIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL L G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLLFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLTARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 6/121 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGKTPFEAAVEASRLRLRPILMTSIAFIMGVVPLVLSTGAGAEMRHAMGVAVFFGM 1018

Query: 806  V 806
            +
Sbjct: 1019 L 1019



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 89/253 (35%), Gaps = 12/253 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +            + + V+K
Sbjct: 252 IVVKTAPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLAISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 312 TMAELKQDFP-AGVDYRIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLIAVPVSIVGTFSLLLLFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIVVAASSS 812
           + R    K++ E  G  +  ++   A    L       G     FA+ +A   V++A +S
Sbjct: 428 TARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNS 487

Query: 813 IFIAAPILLFIYD 825
           + ++  +   +  
Sbjct: 488 LTLSPALSAILLK 500


>gi|187730157|ref|YP_001879172.1| acriflavine resistance protein B [Shigella boydii CDC 3083-94]
 gi|187427149|gb|ACD06423.1| acriflavine resistance protein B [Shigella boydii CDC 3083-94]
          Length = 1049

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAIVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|114798600|ref|YP_760626.1| protein-export membrane protein SecF [Hyphomonas neptunium ATCC
           15444]
 gi|114738774|gb|ABI76899.1| protein-export membrane protein SecF [Hyphomonas neptunium ATCC
           15444]
          Length = 329

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 97/307 (31%), Positives = 164/307 (53%), Gaps = 17/307 (5%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            P    I FMR R+ GV +S++  + S+ L+ T GLN G+DF GG  + +     V ++ 
Sbjct: 6   WPTETKIPFMRYRYVGVVLSVIMMVASVYLVMTRGLNLGVDFAGGSVVELRQTDSVTVAD 65

Query: 594 VRSNLESLQIGDISFQNFD----------------GEKNFLVRLQYQPGDSVAQTRVLEM 637
           VR  +      + +  +                  G +   +  + +   + A +    +
Sbjct: 66  VRDRIPGGLTVNSATDSNGAELVVIRFGEVDASLLGPEFAELTDEEKADRASAASNTFVV 125

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K    +    I   + VGPK+S EL R+G++ + ++ I M +YI  R+ W +A+G I
Sbjct: 126 NTLKQEFGLTDQDILRNDSVGPKVSGELFREGLIALGVATIMMFLYIAFRYSWSYAVGGI 185

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             LI D   T+G F+L  I+F+LT +AA+LT+IGYSVND VVV+DR+R+  + Y   +  
Sbjct: 186 AALIHDAIGTIGLFSLLQIQFDLTTIAALLTIIGYSVNDSVVVFDRIREIRRKY-KQMPA 244

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            ++ID + N+TL R+  T     I++L +A++GG V+   ++ M +GI++   SSI+ AA
Sbjct: 245 TEVIDIATNQTLSRTFLTGGTTLIAILAIAIFGGPVLQGMSVAMIWGIIIGTYSSIYFAA 304

Query: 818 PILLFIY 824
            I+L + 
Sbjct: 305 AIVLMLG 311


>gi|27379845|ref|NP_771374.1| preprotein translocase subunit SecF [Bradyrhizobium japonicum USDA
           110]
 gi|27352998|dbj|BAC49999.1| protein-export membrane protein [Bradyrhizobium japonicum USDA 110]
          Length = 339

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 116/295 (39%), Positives = 189/295 (64%), Gaps = 6/295 (2%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-D 590
            ++PD     F R R     IS   SI +I L FTHGLN GIDFKGG  L V A     D
Sbjct: 29  RIVPDNTHFDFTRFRRISFPISAALSIVAITLFFTHGLNLGIDFKGGTLLEVRAKSGAAD 88

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +R+ L+ L++G++  Q F G +N L+R+  QPG   AQ   ++ V+  +        
Sbjct: 89  IAAMRTTLDGLRLGEVQLQQFGGPENVLIRVAEQPGGDTAQQEAVQKVRTAL---GDSIE 145

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +  E++GP+++ EL+  G++G++++ +A+LIY+W RF+W FALGA+   + DI  T+GF
Sbjct: 146 YRRVEVLGPRVAGELLAYGMLGLMLAIVAILIYLWFRFEWQFALGAMIANVHDIVLTIGF 205

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            ++  ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y   +    L+++SIN TL 
Sbjct: 206 MSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLS 264

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824
           RS+ T +   +++L + ++GG  I SF   M FG ++V   +SIFIAAPIL+++ 
Sbjct: 265 RSIITHVTVTLALLALLLFGGHAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 319


>gi|206576097|ref|YP_002240037.1| acriflavine resistance protein B [Klebsiella pneumoniae 342]
 gi|290510154|ref|ZP_06549524.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Klebsiella sp.
           1_1_55]
 gi|206565155|gb|ACI06931.1| acriflavine resistance protein B [Klebsiella pneumoniae 342]
 gi|289776870|gb|EFD84868.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Klebsiella sp.
           1_1_55]
          Length = 1048

 Score =  200 bits (508), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 68/689 (9%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLSIL-----KLPVAQYPTIAPPA-------------ISITAMY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117
                  +Q      +   +      ++      +     ITL+F      +    +V  
Sbjct: 50  PGADAETVQNTVTQVIEQNMNGIDHLMYMSSNGDSTGTATITLTFESGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +         +++          +  + S  +     D I  +
Sbjct: 110 KLALATPLLPQEVQQQGISVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISALKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTNTE-------------EFGNILLKVNQDGSQVRLRDVAKIELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFFPSGMKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +++  +  S         + 
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGSHGATTGFFGWF 515

Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                                   + V   I+    +   +         + +G      
Sbjct: 516 NRMFDKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAWLFVRLPSSFLPDEDQGVFLSMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +    ++ +  + E  F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLDEMTNYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + ++           ++    +  
Sbjct: 636 RPGEENKVEAITGRAMGYFSQIKDAMVFA 664



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +     K+    
Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMEELAGKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|299769058|ref|YP_003731084.1| probable rnd superfamily protein [Acinetobacter sp. DR1]
 gi|298699146|gb|ADI89711.1| probable rnd superfamily protein [Acinetobacter sp. DR1]
          Length = 1037

 Score =  200 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 82/693 (11%), Positives = 207/693 (29%), Gaps = 49/693 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I  +G +  L        ++++P   P            G ++    + 
Sbjct: 9   RPIFAWVLSICIMALGTISIL-----TLPIEQYPDIAPP-----------GVNVT--ANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   +K           S    Q +I+LSF  +   +    +V  
Sbjct: 51  PGASAKTVEDSVTQILEQQIKGIDGLLYFSSSSSSAGQARISLSFDQNTNPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  + ++  +  T  +  S+++     +     +++ S  ++    D +   
Sbjct: 111 AVNQALSRLPQEVQQQGITVTKSQGDSLLVFALYDESGTRSSVDISDYMVSTLQDPLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L       + +       N        G    RD  
Sbjct: 171 DGVGEITVFGAQ-YAMRIWLDPHKLNSYGLMPSDVRTAIEAQNTQITAGELGALPTRDGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     +                 +    I   +             + +     
Sbjct: 230 ALNATVTALSRL-------------QTVSQFENIILRTQTNGAVVLLKDVARVERGAESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +       +  +   T E        L A             +      
Sbjct: 277 QTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T A    LV+IV+F+ +   +  L+   ++ + ++ T  +LS+LG ++   ++
Sbjct: 337 SVNGVIKTLAEAIVLVIIVMFLFLQSWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +N     +  +        +    +      + 
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMHEQNVDARQATLISMKEISGALVGIAMVLAAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  ++++S   A+++  A+   +++    K       + F  
Sbjct: 457 MAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLLKPANEKHKQRKFFTWFNR 516

Query: 534 IPDCIAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +     +         + + + +    + ++        +      + +G + +    
Sbjct: 517 KVEQGQSGYRTKLVAVLGKPKIFMIIFVGITALLGWQYTRMNTGFLPQEDQGSVMVQFST 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                L+        +    ++ +  +    F+V  +   G           +K      
Sbjct: 577 PVGTTLAETERVGNQIADYFLTKEKDNLNVIFMVMGRNNAGSGQNVGMAFAGLKHWDDRE 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +T +          + L    +  +  +A+
Sbjct: 637 GSENTAEAVIARANAHFKSLRNARVQVLSPAAV 669



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 84/210 (40%), Gaps = 8/210 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +      +  +   +   + ++  +++          +I+     +++  I M +++ 
Sbjct: 302 ETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEASVNGVIKTLAEAIVLVIIVMFLFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L     + + +  T G  ++ G   N   + A++  IG  V+D +VV + + 
Sbjct: 362 ---SWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTLFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               ++  ++  R     S+ E  G  V  +M      LPMA +GGSV      F++ + 
Sbjct: 418 -ERVMHEQNVDARQATLISMKEISGALVGIAMVLAAVFLPMAFFGGSVGIIYRQFSVTLV 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +V++A  ++ ++  +   +     +  +
Sbjct: 477 SAMVLSAIVALTLSPALCATLLKPANEKHK 506



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 76/209 (36%), Gaps = 9/209 (4%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIISAIAML 681
             Q   S A          K+ ++V      N +  G     +L   + I   + S I + 
Sbjct: 822  VQLQGSAATGESSGGAMDKMQQLVDQQQGFNLQWSGLSYQEKLAGGQTIWLYLASIIFIF 881

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +   ++ W   +  +  + L +   +   +L G   ++    A+LT IG S  + +++
Sbjct: 882  LCLAALYESWSIPVSVMLVIPLGLIGAVVAASLAGFVNDIYFQVAMLTTIGLSAKNAILI 941

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
             +             +  D I +   + L   + TS+A    VLP+AV    G       
Sbjct: 942  VEFA---AAKLEAGQALMDAIIEGAGQRLRPIIMTSLAFVAGVLPLAVSTGAGAVSRKEI 998

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             I +  G++     SIF   P+   +   
Sbjct: 999  GIAVTGGMISGTLLSIFFV-PLFFLLVRR 1026


>gi|283832147|ref|ZP_06351888.1| inner membrane multidrug efflux protein BpeB [Citrobacter youngae
           ATCC 29220]
 gi|291071779|gb|EFE09888.1| inner membrane multidrug efflux protein BpeB [Citrobacter youngae
           ATCC 29220]
          Length = 1037

 Score =  200 bits (507), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATVTLSFVAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPDQFRDITLRVNQDGSEVKLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T          L           V          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATATLVINRLNELSQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L        ++ +G     +
Sbjct: 516 NRMFNRNAERYEKGVARILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEEVEKYYFTHEKDNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K   ++    +  
Sbjct: 636 RDTTTGTSFAIIERATKAFNKIKEARVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++++  P 
Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATATLVINRLNELSQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 65/186 (34%), Gaps = 8/186 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E         L       +  IS + + + +   ++ W      +  + L +   L 
Sbjct: 853  FGLEWTAMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALL 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   +        D    +  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNEKGHDLLDATLHACRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMAISNGAGSGGQHAVGTGVMGGMLSATILAIFFVPLFFVLVRRR 1029

Query: 827  RAKNAR 832
                 +
Sbjct: 1030 FPLKPK 1035


>gi|259907791|ref|YP_002648147.1| aminoglycoside/multidrug efflux system [Erwinia pyrifoliae Ep1/96]
 gi|224963413|emb|CAX54901.1| Acriflavine resistance protein B [Erwinia pyrifoliae Ep1/96]
          Length = 1037

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 76/689 (11%), Positives = 187/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  +        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGGLAIV-----SLPIEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TL+F      +    +V  
Sbjct: 50  PGASAETLENTVTQVIEQNMTGLDNLMYMSSQSSHTGQATVTLTFEAGTNPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D +   +      + +I++             + +  +     D +   
Sbjct: 110 QLQTALRKLPQDVQAQGVNVNKTGDTNILMVAFVSTDGSMDKQDIADYVASHLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P++L     TT ++       N+       G     D  
Sbjct: 170 NGVGQVDAYGSQ-YAMRIWLGPNKLINYALTTTEVVDAIKSQNSQVAVGQLGGLPSVDRQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      I       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRAITLRVNADGSVVTLGQVARIELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T          L           +          
Sbjct: 276 DYLSRYNGMAASGLGIKLASGANELQTDTLVRARLDELSRFFPHGLKAEIAFETSPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + +  T  +L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPRDATRKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCCTLLKPLAMGHHHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +    ++   W V    L ++ ++  +        ++ +G     V
Sbjct: 516 NRTFNHNAERYKRGVGRMLVKGGRWLVVYLALIAVMALLFMRLPTSFLPLEDRGLFTTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L    + +E ++   ++ +  + +  F        G+     R+   +K    
Sbjct: 576 QLPPGSTLQQTMTVVEKVEHYYLTHEQDNVQSVFATVGAGPGGNGQNVARLFVRLKDWQN 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            +   +T         K    +    +V 
Sbjct: 636 RLGSDNTSFAIIDRATKAFSRINEAKVVA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + L        + +    ++     +++   P 
Sbjct: 260 VTLGQVARIELGAEKYDYLSRYNGMAASGLGIKLASGANELQTDTLVRARLDELSRFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLKAEIAFETSPFVKASIEDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N   + A++  IG  V+D +VV + +     +    +S RD   KS+ +
Sbjct: 380 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPRDATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +GG+       F++ +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCCTLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 76/212 (35%), Gaps = 8/212 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G+S A       +      +  L      +  G  +   +       +  +S + + + +
Sbjct: 827  GESAAGVSNGAAMDMMEKLVSQLPNGIGLQWTGASLQERMTGAQAPALYALSLLVVFLCL 886

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L    L G+E ++     +LT++G S  + +++ + 
Sbjct: 887  AALYESWSIPFSVMLVVPLGVLGALIATWLRGLENDVYFQVGLLTVVGLSAKNAILIVEF 946

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
              +   + +          ++  + L   + TS+A    VLPMA+    G S   +    
Sbjct: 947  ANE---INSRGSELMAATLEASRQRLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTG 1003

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +  G++ A   +IF      + +        +
Sbjct: 1004 VLGGMISATVLAIFFVPLFFVLVRRRFPLKDK 1035


>gi|89073891|ref|ZP_01160398.1| AcrB/AcrD/AcrF family protein [Photobacterium sp. SKA34]
 gi|89050426|gb|EAR55927.1| AcrB/AcrD/AcrF family protein [Photobacterium sp. SKA34]
          Length = 1043

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 71/692 (10%), Positives = 180/692 (26%), Gaps = 52/692 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +     +  + ++PS  P               +V+    
Sbjct: 8   RPIFAWVIAIIVMLAGVLSII-----KLPVSQYPSIAPPT-------------VVISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S      +ITL+F      +    +V  
Sbjct: 50  PGANAKTMEDTVTQVIEQRMTGIDNLRYLSSTSDSFGNTQITLTFNAEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  I     D +   
Sbjct: 110 KLQSALPLLPSEVQQQGVKVNKSSSSFLMVVGFYSKDGSMDKNDISDYISSNVADPMSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L +   T+  +       N        G        
Sbjct: 170 PGVGEIQTFGAQ-YAMRIWLDPLKLTKYNLTSIDVISAIKEQNAQISAGQLGAAPSLPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +             +       
Sbjct: 229 ELNATVSAQSRL-------------KTPEEFKNIIVKSDSSGATVHLGDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T E        L+         +           
Sbjct: 276 SVQVFYNGKPASGLGIKLATGANALATAEAVKAKIDELKPFFPEGLETVYPYDTTPFVEK 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV I++++ +   +  L+   ++ + ++ T A+LS+ G ++   ++
Sbjct: 336 SIEGVVHTLFEAVALVFIIMYLFLQNFRATLIPTIAVPVVLLGTFAVLSMAGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  +   +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEEGLNAVEATRKSMDQITGALVGIAMTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + F  G      R F+IT+  ++ +S+  A+ +  A+   +                +  
Sbjct: 456 MAFMSGSTGVIYRQFSITIVTAMALSVMVALILTPALCATMLKPIEHGEIKGFFGWFNRT 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +        +A    R+         L                  + +G +    +  
Sbjct: 516 FDNLTKRYESSVAAMIKRSIRVMFIFLGLTVAVGWVFSKMPTSFLPDEDQGILFSQAILP 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++ +    ++ +       F V      G           +K      +
Sbjct: 576 VNSTQEQTQEVMDKVSNYYLNEEKDTVASVFSVSGFSFAGSGQNMGMAFIGLKDWSDRQL 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           P   +++          ++       ++ S  
Sbjct: 636 PGMDVKSIVGRSMAYFHQIKN----ALVFSFA 663



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 81/269 (30%), Gaps = 13/269 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +       V  S   +         +   N     N    +      
Sbjct: 773  QYRMKPTDLDTWYVRNNKGEMVPFSAFATGEWKYASPRLERFNATPAVNIQGSVVAGYST 832

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + EMVK+            + E         ++        +S + + + +   
Sbjct: 833  GQAMLDIEEMVKQLPPGFGIEWNGLSYEERLSGNQAPMLY------ALSILVVFLVLAAL 886

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      I  + L I   L      G+  ++     +LT +G +  + +++ +  ++
Sbjct: 887  YESWSVPFAVILVVPLGIIGALLAMNARGMPNDVFFQVGLLTTVGLATKNAILIVEFAKE 946

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
                Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  
Sbjct: 947  Y---YEKGAGLVEATLHAVRVRLRPIIMTSLAFGLGVVPLAISTGVGSGGKNAIGTAVLG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G++ +    IF      + +    ++  +
Sbjct: 1004 GMLSSTFLGIFFIPIFFVVVERIFSRRKK 1032



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 82/235 (34%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   +         + L        +++A    ++    ++    P 
Sbjct: 260 VHLGDVARVELGAEDYSVQVFYNGKPASGLGIKLATGANALATAEAVKAKIDELKPFFPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                          + I   +  +  +   + I +++  + +   L     + + +  T
Sbjct: 320 GLETVYPYDTTPFVEKSIEGVVHTLFEAVALVFIIMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               ++ G   N   + A++  IG  V+D +VV + +     ++   ++  +   KS+++
Sbjct: 380 FAVLSMAGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEEGLNAVEATRKSMDQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  +M      +PMA   GS       F+I +   + ++   ++ +   +
Sbjct: 438 ITGALVGIAMTLSAVFVPMAFMSGSTGVIYRQFSITIVTAMALSVMVALILTPAL 492


>gi|327481770|gb|AEA85080.1| preprotein translocase subunit SecF [Pseudomonas stutzeri DSM 4166]
          Length = 303

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 89/292 (30%), Positives = 157/292 (53%), Gaps = 5/292 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM  R     +++L ++ S+  L   GLN+G+DF GG  + +   RPV+L  VR
Sbjct: 1   MKRVINFMGVRHVAFALTVLLTVASLGSLVVKGLNFGLDFTGGTLIELGYERPVELEQVR 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L      D   Q+F    + LVR+         Q         +  +     +++  E
Sbjct: 61  GQLVQAGFTDAVVQSFGATTDVLVRMP----GDDPQLGERIASALRNADGGNAVSVKRVE 116

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL  +G +G++++   +L+Y+  RF+W F  GA+ +L  D+   LG F+ F 
Sbjct: 117 FVGPAVGEELRDQGGLGMLLALGGILVYVAFRFQWKFGFGAVLSLFHDVIVVLGVFSFFQ 176

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I F+LT +AAVL +IGYS+ND +V++DR+R+N +         + I+ S ++TL R++ T
Sbjct: 177 ISFDLTVLAAVLAVIGYSLNDTIVIFDRIRENFR-MLRKAELLENINISTSQTLLRTMAT 235

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           S++  ++V  + V+GG  +  F++ +  G+ V   SS+++A  +L+++   R
Sbjct: 236 SVSTLLAVGALMVFGGENLWGFSLALLIGVGVGTYSSVYVAGTLLVWLKLTR 287


>gi|152972186|ref|YP_001337332.1| integral transmembrane protein; acridine resistance [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150957035|gb|ABR79065.1| integral transmembrane protein; acridine resistance [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 1036

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 73/682 (10%), Positives = 186/682 (27%), Gaps = 42/682 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  L     Q  + ++P+  P                     +
Sbjct: 8   RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +     +  ITL+F      +    +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D   +   + S  +     D I       
Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPTTTQDDISDYVASNVKDPISRLNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D + L +   T   +     + N+       G            
Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALQVQNDQIAAGQLGGTPALKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +                      I           
Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +          +   T        A L+         +           S   
Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++ G+V
Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   + +   S+    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
           GG      R F+IT+  ++ +S+  A+ +  A+   +          +       +    
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                  + ++        + V   ++    ++  +         + +G     +     
Sbjct: 520 RSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                 +  L+++    +  +  + E  F V      G           +K         
Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDK 639

Query: 649 STIQNTEIVGPKISRELIRKGI 670
           +++++          ++    +
Sbjct: 640 NSVESIIKRATVAFSQIKDAMV 661



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +            G + L V A+  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680
           +   G +   T      K    +      ++           ++ I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    ++FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +S ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 854  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLA 913

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+  ++     +LT IG S  + +++ +  +  M+         +   ++    L 
Sbjct: 914  ATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--IIEATLEASRMRLR 971

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G++ A   +I
Sbjct: 972  PILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATLLAI 1017


>gi|329997537|ref|ZP_08302815.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3]
 gi|328539020|gb|EGF65064.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3]
          Length = 1036

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 73/682 (10%), Positives = 186/682 (27%), Gaps = 42/682 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  L     Q  + ++P+  P                     +
Sbjct: 8   RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +     +  ITL+F      +    +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D   +   + S  +     D I       
Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPTTTQDDISDYVASNVKDPISRLNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D + L +   T   +     + N+       G            
Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALQVQNDQIAAGQLGGTPALKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +                      I           
Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +          +   T        A L+         +           S   
Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++ G+V
Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   + +   S+    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
           GG      R F+IT+  ++ +S+  A+ +  A+   +          +       +    
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                  + ++        + V   ++    ++  +         + +G     +     
Sbjct: 520 QSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                 +  L+++    +  +  + E  F V      G           +K         
Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDK 639

Query: 649 STIQNTEIVGPKISRELIRKGI 670
           +++++          ++    +
Sbjct: 640 NSVESIIKRATVAFSQIKDAMV 661



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +            G + L V A+  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680
           +   G +   T      K    +      ++           ++ I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    ++FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +S ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 854  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLA 913

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+  ++     +LT IG S  + +++ +  +  M+         +   ++    L 
Sbjct: 914  ATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--IIEATLEASRMRLR 971

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G++ A   +I
Sbjct: 972  PILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATLLAI 1017


>gi|90581492|ref|ZP_01237286.1| AcrB/AcrD/AcrF family protein [Vibrio angustum S14]
 gi|90437353|gb|EAS62550.1| AcrB/AcrD/AcrF family protein [Vibrio angustum S14]
          Length = 1043

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 69/692 (9%), Positives = 179/692 (25%), Gaps = 52/692 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +     +  + ++PS  P               +V+    
Sbjct: 8   RPIFAWVIAIIVMLAGVLSII-----KLPVAQYPSIAPPT-------------VVISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S      +ITL+F      +    +V  
Sbjct: 50  PGANAKTMEDTVTQVIEQRMTGIDNLRYLSSTSDSFGNTQITLTFNAEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  I     D +   
Sbjct: 110 KLQSALPLLPSEVQQQGVKVNKSSSSFLMVVGFYSKDGSMDKNDISDYISSNVADPMSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L +   T+  +       N        G        
Sbjct: 170 PGVGEIQTFGAQ-YAMRIWLDPLKLTKYNLTSLDVISAIKEQNAQISAGQLGAAPSLPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +             +       
Sbjct: 229 ELNATVSAQSRL-------------KTPEEFKNIIVKSDSAGATVRLGDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T E        L+         +           
Sbjct: 276 SVQVFYNGKPASGLGIKLATGANALATAEAVKAKIDELKPFFPEGLETVYPYDTTPFVEK 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV I++++ +   +  L+   ++ + ++ T A+LS+ G ++   ++
Sbjct: 336 SIEGVVHTLFEAVVLVFIIMYLFLQNFRATLIPTIAVPVVLLGTFAVLSMAGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIA 473
             +VL IGL VD  I+V E +    + +  +   +      +       I  +     + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEEGLNAVEATRKSMDQITGALVGIAMTLSAVFVP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
              +    G   R F+IT+  ++ +S+  A+ +  A+   +        +       +  
Sbjct: 456 MAFMSGSTGVIYRQFSITIVTAMALSVMVALILTPALCATMLKPIEHGEKKGFFGWFNRT 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +        +A    R+         L                  + +G +    +  
Sbjct: 516 FDNLTKRYESSVAAMIKRSIRVMFIFLGLTVAVGWVFSKMPTSFLPDEDQGILFSQAILP 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++ +    ++ +       F V      G           +K      +
Sbjct: 576 VNSTQEQTQEVMDKVSNYYLNEEKDTVASVFSVSGFSFAGSGQNMGMAFIGLKDWSDRQL 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           P   +++          ++       ++ S  
Sbjct: 636 PGMDVKSIVGRSMAYFHQIKN----ALVFSFA 663



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 81/269 (30%), Gaps = 13/269 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +       V  S   +         +   N     N    +      
Sbjct: 773  QYRMKPTDLDTWYVRNNKGEMVPFSAFATGEWKYASPRLERFNATPAVNIQGSVVAGYST 832

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + EMVK+            + E         ++        +S + + + +   
Sbjct: 833  GQAMLDIEEMVKQLPPGFGIEWNGLSYEERLSGNQAPMLY------ALSILVVFLVLAAL 886

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      I  + L I   L      G+  ++     +LT +G +  + +++ +  ++
Sbjct: 887  YESWSVPFAVILVVPLGIIGALLAMNARGMPNDVFFQVGLLTTVGLATKNAILIVEFAKE 946

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
                Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  
Sbjct: 947  Y---YEKGAGLVEATLHAVRVRLRPIIMTSLAFGLGVVPLAISTGVGSGGKNAIGTAVLG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G++ +    IF      + +    ++  +
Sbjct: 1004 GMLSSTFLGIFFIPIFFVVVERIFSRGKK 1032



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 84/240 (35%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V L  V       +   +         + L        +++A    ++    ++ 
Sbjct: 255 SAGATVRLGDVARVELGAEDYSVQVFYNGKPASGLGIKLATGANALATAEAVKAKIDELK 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  +  + + + I +++  + +   L     + +
Sbjct: 315 PFFPEGLETVYPYDTTPFVEKSIEGVVHTLFEAVVLVFIIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    ++ G   N   + A++  IG  V+D +VV + +     ++   ++  +   
Sbjct: 375 VLLGTFAVLSMAGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEEGLNAVEATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V  +M      +PMA   GS       F+I +   + ++   ++ +   +
Sbjct: 433 KSMDQITGALVGIAMTLSAVFVPMAFMSGSTGVIYRQFSITIVTAMALSVMVALILTPAL 492


>gi|39935897|ref|NP_948173.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris
           CGA009]
 gi|39649751|emb|CAE28272.1| putative protein-export membrane protein secF [Rhodopseudomonas
           palustris CGA009]
          Length = 372

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 116/302 (38%), Positives = 187/302 (61%), Gaps = 6/302 (1%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
              L    ++PD     F R R     IS + SI +I L FTHGLN+GIDF+GG  L V 
Sbjct: 22  FGWLPSLRIVPDNTHFDFTRFRRISFPISAVLSIAAITLFFTHGLNFGIDFRGGTLLEVR 81

Query: 585 ANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           A+    D++ +R  L  L +GD+  Q F G    L+R+  QPG   AQ   ++ V+  + 
Sbjct: 82  AHSGAADIAGMRDTLSKLSLGDVQLQQFGGPAEVLIRIAEQPGGDQAQQVAVQKVRAAL- 140

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   +  E+VGP++S EL+  G++G++++ + +L+Y+W RF+W FALGA+   + D
Sbjct: 141 --GDSVDYRRVEVVGPRVSSELLAFGMLGLMVAILGILVYLWFRFEWQFALGAMIANVHD 198

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T+GF ++  ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y   +    L+++
Sbjct: 199 IVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNE 257

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822
           SIN TL RS+ T +   +++L + ++GG  I SF   M FG ++V   +SIFIAAPIL++
Sbjct: 258 SINSTLSRSIITHVTVTLALLALLLFGGHAIHSFTAVMMFGVVLVGTYTSIFIAAPILIY 317

Query: 823 IY 824
           + 
Sbjct: 318 LG 319


>gi|311277772|ref|YP_003940003.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter cloacae SCF1]
 gi|308746967|gb|ADO46719.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter cloacae SCF1]
          Length = 1036

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 71/682 (10%), Positives = 186/682 (27%), Gaps = 42/682 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  L     Q  + ++P+  P                     +
Sbjct: 8   RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        ITL+F      +    +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGGVTITLTFKSGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D   +   + S  +     D I       
Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPTTSQDDISDYVASNVKDAISRLNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D + L +   T   +     + N+       G            
Sbjct: 174 DVQLFGAQ-YAMRIWLDGNLLNKYNLTPVDVINQLKIQNDQIAAGQLGGTPAVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +                      I           
Sbjct: 233 SIIAQTRL-------------KDPVEFGNVTLRVNADGSVVHLKDVARIELGGENYNVVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +          +   T        A L+         +           S   
Sbjct: 280 RINDKPASGLGIKLATGANALDTAAAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++ G+V
Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     +++     + +   S+    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
           GG      R F+IT+  ++ +S+  A+ +  A+   +          +       +    
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPAAADHHEKKGFFGWFNAKFD 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +      + ++        + +   ++ +  ++  +         + +G     +     
Sbjct: 520 NSVNHYTNSVSRILHGTGRYLLIYVLIVAGMAVLFMRLPTSFLPEEDQGVFMTMIQLPSG 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                 +  L+ +    ++ +  + E  F V      G           +K         
Sbjct: 580 ATQERTQKVLDEVSHYYLNNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEERSGTA 639

Query: 649 STIQNTEIVGPKISRELIRKGI 670
           + +++          ++    +
Sbjct: 640 NNVESIIKRATMAFSQIKDAMV 661



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 93/269 (34%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +            G + L V A+  V      + +E            + +    + +
Sbjct: 232 ASIIAQTRLKDPVEFGNVTLRVNADGSVVHLKDVARIELGGENYNVVARINDKPASGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T   ++    ++    P               +  I + +  +  + I +
Sbjct: 292 KLATGANALDTAAAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    + FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +  ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMVEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            + +         L T    +  G      L       +  IS I + + +   ++ W   
Sbjct: 837  DAMLLMEQLAGQLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 896

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 897  FSVMLVVPLGVIGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 956

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 957  G--IIEATLEASRMRLRPILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATL 1014

Query: 811  SSI 813
             +I
Sbjct: 1015 LAI 1017


>gi|62181046|ref|YP_217463.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62128679|gb|AAX66382.1| RND family, aminoglycoside/multidrug efflux pump [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322715529|gb|EFZ07100.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 1037

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTAPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLCVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W +   +L        L         + +G     +
Sbjct: 516 NRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQEDRGMFTTSI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++    + +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVEKVENYYFTHEKNNIMSVFSTVGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPTTGSSFAIIERATKAFNQIKEARVFA 664



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 876  AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +   +   +     +  D    +  +     + TS+A    VLPMA     
Sbjct: 936  SAKNAILIVEFANE---MNQKGHALLDATLYASRQRPRPILMTSLAFIFGVLPMATSTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     +    +  G++ A   +IF      + I        R
Sbjct: 993  GSGSQHAVGTGVTGGMISATILAIFFVPLFFVLIRRRFPLKPR 1035


>gi|51832760|gb|AAN38824.2| AdeE [Acinetobacter sp. 4365]
          Length = 1036

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 82/693 (11%), Positives = 205/693 (29%), Gaps = 49/693 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I  +G +  L        ++++P   P            G ++    + 
Sbjct: 9   RPIFAWVLSICIMALGTISIL-----TLPIEQYPDIAPP-----------GVNVT--ANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   +K           S    Q +I+LSF  +   +    +V  
Sbjct: 51  PGASAKTVEDSVTQILEQQIKGIDGLLYFSSSSSSAGQARISLSFDQNTNPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  + ++  +  T  +  S+++     +     +++ S  ++    D +   
Sbjct: 111 AVNQALSRLPQEVQQQGITVTKSQGDSLLVFALYDESGTRSSVDISDYMVSTLQDPLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L       + +       N        G    RD  
Sbjct: 171 DGVGEITAFGAQ-YAMRIWLDPHKLNSYGLMPSDVRTAIEAQNTQITAGELGALPTRDGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     +                 +    I   E             + +     
Sbjct: 230 ALNATVTALSRL-------------QTVSQFENIILRTETNGAVVLLKDVARVERGAESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +       +  +   T E        L A             +      
Sbjct: 277 QTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T A    LV+IV+F+ +   +  L+   ++ + ++ T  +LS+LG ++   ++
Sbjct: 337 SVNGVIKTLAEAIVLVIIVMFLFLQSWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     +       +  +        +    +      + 
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMHEQNLDARQATLISMQEISGALVGIAMVLAAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  ++++S   A+++  A+   +++    K       + F  
Sbjct: 457 MAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLLKPANEKHKQRKFFTWFNR 516

Query: 534 IPDCIAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +     +         + + + +    + ++        +      + +G + +    
Sbjct: 517 KVEQGQSGYRTKLVAVLGKPKVFMIIFVGITALLGWQYTRMNTGFLPQEDQGSVMVQFST 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                L+        +    ++ +  +    F+V  +   G           +K      
Sbjct: 577 PVGTTLAETERVGNQIADYFLTKEKNNLNVIFMVMGRNNAGSGQNVGMAFAGLKHWDDRE 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +T +          + L    +  +  +A+
Sbjct: 637 GSENTAEAVIARANAHFKSLRNARVQVLSPAAV 669



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 84/210 (40%), Gaps = 8/210 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +      +  +   +   + ++  +++          +I+     +++  I M +++ 
Sbjct: 302 ETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEASVNGVIKTLAEAIVLVIIVMFLFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L     + + +  T G  ++ G   N   + A++  IG  V+D +VV + + 
Sbjct: 362 ---SWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTLFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               ++  ++  R     S+ E  G  V  +M      LPMA +GGSV      F++ + 
Sbjct: 418 -ERVMHEQNLDARQATLISMQEISGALVGIAMVLAAVFLPMAFFGGSVGIIYRQFSVTLV 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +V++A  ++ ++  +   +     +  +
Sbjct: 477 SAMVLSAIVALTLSPALCATLLKPANEKHK 506



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 8/212 (3%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIISAIAML 681
             Q   S A          K+ ++V      N +  G     +L   + I   + S I + 
Sbjct: 821  VQIQGSAAAGESSGGAMDKMQQLVDQQQGFNLQWSGLSYQEKLAGGQTIWLYLASIIFIF 880

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +   ++ W   +  +  + L +   +   +L G   ++    A+LT IG S  + +++
Sbjct: 881  LCLAALYESWSIPVSVMLVIPLGLIGAVVAASLAGFVNDIYFQVAMLTTIGLSAKNAILI 940

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
             +             +  D I +   + L   + TS+A    VLP+AV    G       
Sbjct: 941  VEFA---AAKLEAGQALMDAIIEGAGQRLRPIIMTSLAFVAGVLPLAVSTGAGAVSRKEI 997

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             I +  G++     SIF      L +     K
Sbjct: 998  GIAVTGGMISGTLLSIFFVPLFFLLVRRLTNK 1029


>gi|113969359|ref|YP_733152.1| preprotein translocase subunit SecD [Shewanella sp. MR-4]
 gi|113884043|gb|ABI38095.1| protein-export membrane protein SecD [Shewanella sp. MR-4]
          Length = 624

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 163/532 (30%), Positives = 276/532 (51%), Gaps = 35/532 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  +++ P  L  +++   PS +       I LGLDLRGG   +L+VD          
Sbjct: 105 TLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQAD 164

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQNK------ITLSFADSRFKENIADKVTLFLQGVNSK 125
              + LR FL+++ I   S+R    +      I ++F D+          T   +    +
Sbjct: 165 ALVESLRQFLREQQIRGASVRIDSTRDDAGLQIAIAFNDAAES-------TNNARSAIRQ 217

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                     +T  +  + + L+Q    ++ +  ++Q+++I+R RI+++GI+E+ +QR G
Sbjct: 218 FMQQSYPTWQLTNADNGLVVQLAQEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
            HRI I+LPG QDP+  + ++G TA ++F +V             + L+D  GN   V  
Sbjct: 278 EHRIRIELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAQVLKDKSGNPVYVAR 332

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
              + G H+  A AN         V+I  D +G ++  E +R NI KP+A          
Sbjct: 333 TPILGGDHIVDARANIGEMGM-AEVNIHLDRIGGQKMSEFSRANIDKPMATSYSEYSRDE 391

Query: 306 P------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                           Q+    + +I+G  T + A  LA +LRAGS+   + IVEER +G
Sbjct: 392 QGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIG 451

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATL 412
             LG+++I  G  A+  G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A L
Sbjct: 452 PTLGAENIQNGFAALGLGMGITLLFMALWYRRLGWVANVALIANMVILFGLLALIPGAVL 511

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAG+VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STIFD+N T +I
Sbjct: 512 TLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMI 571

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
             VVL+  G G ++GFA+T+GL +L SMFT I   RA++  +      + + 
Sbjct: 572 TAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVR 623



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 93/260 (35%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    + +          +    ++ L       G    Q
Sbjct: 365 GQKMSEFSRANIDKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 424

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I+ G   + +     L+++ + ++  
Sbjct: 425 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALWYR-R 483

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 484 LGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 543

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID   +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 544 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 600

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  ++  +Y   A+ 
Sbjct: 601 TGIFASRALINLVYGRDARR 620


>gi|310815839|ref|YP_003963803.1| protein-export membrane protein SecD [Ketogulonicigenium vulgare
           Y25]
 gi|308754574|gb|ADO42503.1| protein-export membrane protein SecD [Ketogulonicigenium vulgare
           Y25]
          Length = 554

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 187/554 (33%), Positives = 298/554 (53%), Gaps = 33/554 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSA 38
           M    W  IL  ++   G+L A+PN                         ++    +P+ 
Sbjct: 1   MHIPLWRRILTWVVVAAGVLAAVPNAFYATVEQSNDAKSQIESGVSDDALRAQAAGWPAW 60

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ----I 94
           +P + +SLGLDLRGG+HL+ EV         +     ++R  L  +   +  +++     
Sbjct: 61  LPSSIVSLGLDLRGGAHLLAEVQLSQVYAERVDAMWPQVRDLLAAQRDTLGFVQRIEGGD 120

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
            + + +  +++       D +    Q V +   +      +       ISI LS+     
Sbjct: 121 PSALRVRISNADQAGRAVDLIRTLAQPVQTLTGIGATDLDV-RADNGVISITLSEAERAA 179

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
               A+ QS+EIIR+RID++G  E TI R G  RIL+Q+PG      ++ L+G TA+++F
Sbjct: 180 TDERAMRQSLEIIRRRIDEVGTREPTIIRQGEDRILVQVPGVGSAQEVKDLIGATARLTF 239

Query: 215 HKV----LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
             V       N++      V    D  G  Y+++ +  +SG  L  +  +FD    +PVV
Sbjct: 240 QHVVSSTNDPNAQVTPDQEVLPALDQPGVYYILDRQEIVSGEQLVDSQPSFDQTG-RPVV 298

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
              F+  GAR F E T    G   A+VLDG V++AP I + I  G   ISG F IE    
Sbjct: 299 TFRFNPTGARAFGEHTAQYTGSLFAIVLDGEVISAPQIREPILGGSGSISGTFNIEQTTN 358

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG-KWGLV 389
           LA +LRAG+LP  L  +EER +G +LG DSI  G  A +   +L++ +M++ YG  +G++
Sbjct: 359 LAVLLRAGALPADLVFLEERTIGPELGQDSIDAGVRASIIAGLLVMGYMVLSYGLFFGMI 418

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A+ ++ LNV + L LLS++GATLTLP IAGIVL +G+AVD+N+L+ ER+REE R+ ++ +
Sbjct: 419 ANIALILNVTMMLGLLSIIGATLTLPGIAGIVLTMGVAVDANVLIFERMREEIRRGKAPW 478

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
              ++G+ +A S I DSNIT+++  ++L+  G GAVRGFA+T+GL +  SMFTA+ + R 
Sbjct: 479 RCFELGYDKAMSAIIDSNITSIMIAIILYVIGSGAVRGFAVTLGLGVATSMFTAVFVTRL 538

Query: 510 MMIFIIRYKKMKSI 523
           +++     +K K +
Sbjct: 539 ILLHWFEMRKPKKL 552



 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 34/176 (19%), Positives = 90/176 (51%), Gaps = 3/176 (1%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G+   II+ + ++ Y+ + +  +F + A   LIL++T  LG  ++ G
Sbjct: 379 TIGPELGQDSIDAGVRASIIAGLLVMGYMVLSYGLFFGMIANIALILNVTMMLGLLSIIG 438

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++RMR+ ++      +     +   ++ +   + +
Sbjct: 439 ATLTLPGIAGIVLTMGVAVDANVLIFERMREEIR---RGKAPWRCFELGYDKAMSAIIDS 495

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++ + +  + + V G   +  FA+ +  G+  +  +++F+   ILL  ++ R    
Sbjct: 496 NITSIMIAIILYVIGSGAVRGFAVTLGLGVATSMFTAVFVTRLILLHWFEMRKPKK 551


>gi|158534611|gb|ABW72062.1| acriflavin resistance protein B [Edwardsiella tarda]
          Length = 1050

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 71/688 (10%), Positives = 184/688 (26%), Gaps = 51/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P+  P               + +    
Sbjct: 8   RPIFAWVLAIIMMLAGALAIM-----SLPVAQYPTVAPPA-------------VTISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAATVQNSVTQVIEQNMNGIDNLMYMSSTSDSAGNASITLTFEAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D +  +
Sbjct: 110 KLQLAMPSLPQEVQQQGVSVDKASSSILLVAGFISEDGSLSQDDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L +   T   +     + NN   G   G        
Sbjct: 170 QGVGSVQLFGSQ-YAMRIWLDPNKLNKYNLTPVDVVSQIKVQNNQIAGGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    R        +       
Sbjct: 229 QLNASIIVQTRL-------------KDPTEFGKILLKVQQDGSRVLLRDVARVELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A L          +           
Sbjct: 276 GTIARYNGKPAAGIAVKLATGANALDTAKAVKTELAKLAPYFPASLKTVYPYDTTPFVQL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L ++G ++   ++
Sbjct: 336 SIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAILEIVGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +          ++       
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPALCATMLKPIAKGDHGVQTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + V   ++     +  +         + +G +    
Sbjct: 516 NRLFEKSTHHYTDSVGRILRGTGRYLVIYLLIVVGMGLLFIRLPTSFLPEEDQGVLLTMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                       + L+ +    ++ +  + E  F V      G           +K    
Sbjct: 576 QLPPGATQERTNNVLKQVSQYYLTKEKDNVESVFTVSGFGFSGQGQNNGLAFVSLKPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIV 671
                + +            ++    + 
Sbjct: 636 RKGDQNKVTAIIQRAAGAFSKINDAMVY 663



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 81/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +      +        +        +++   + ++    K+    P S   
Sbjct: 264 DVARVELGAENYGTIARYNGKPAAGIAVKLATGANALDTAKAVKTELAKLAPYFPASLKT 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + + + + +++  +     L     + + +  T    
Sbjct: 324 VYPYDTTPFVQLSIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAIL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 EIVGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKKSMEQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPAL 492



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +L G+  ++     +LT IG S  + +++ +     M          +   +++   L 
Sbjct: 915  TSLRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAVDLMHKEGKG--LVEATLEAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A    V+P+ +    G     +    +  G+V A   +I
Sbjct: 973  PILMTSLAFIHGVMPLVISNGAGSGAQNAVGTGVMGGMVSATILAI 1018


>gi|152991990|ref|YP_001357711.1| preprotein translocase subunit D [Sulfurovum sp. NBC37-1]
 gi|151423851|dbj|BAF71354.1| preprotein translocase subunit D [Sulfurovum sp. NBC37-1]
          Length = 526

 Score =  200 bits (507), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 157/539 (29%), Positives = 293/539 (54%), Gaps = 33/539 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   + VIL+      G++ ++P+                 +I+LGLDL+GG H++L +
Sbjct: 1   MKTLNFRVILFIFALIFGVVFSIPSLTQSE---------SGKKITLGLDLQGGLHMLLGI 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
             D  +    +  +  ++     E I    +R    +K+T    DS         +   +
Sbjct: 52  KSDVAIASRTKSIAGTVKYIFDDEEIIFDDLRMVDGDKVTFELLDSDDVAKATALLKKEI 111

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         +++     + ++ ++   + +   +AI+Q+++ IR R+++ G++E 
Sbjct: 112 ------------PGIVINQNGMKFTVQMTPEEMARTKQNAIKQAVDTIRNRLNEFGLAEP 159

Query: 180 TIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLP--------NNSKKGFMF 228
           T+ + G  +IL+++PG +   D  R+R+L+   A +    V           ++ +   +
Sbjct: 160 TVAKQGEDKILVEVPGIKTQADEQRIRELIARAAHLQLMAVDEDRAARVSTMSAAEAKSY 219

Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
           G   L+D + N+  +  ++ +    +         K++ PV++ S +  GA+ F + T  
Sbjct: 220 GDVILKDVNTNEKYLLRQIPVLDGSMLTDAKVGFDKSNMPVINFSLNGQGAKIFGDFTAK 279

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
            +GK +AVVLD +V +APVI + I  G  QISGNF +E A  +A  LR+G+L   + ++E
Sbjct: 280 AVGKRMAVVLDNKVYSAPVIRERIGGGHVQISGNFKLEEAHDIAIALRSGALLAPVFVME 339

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           +R+VG  LG+DSI   + A+  G +L++ FM++ Y   G++A+ ++  N+ L LA++SL 
Sbjct: 340 KRSVGPSLGADSIKASSIALALGFILVIAFMVIYYSMAGVIANVALVGNLFLILAIMSLF 399

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GATLTLP +AGIVL +G+AVD+N+++NERIRE   + +S+  +++ G+  A++ I D+N+
Sbjct: 400 GATLTLPGMAGIVLTVGMAVDANVIINERIRELLHEGKSIAKAIEDGYDNAFTAILDANV 459

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           T LIA VVL+ +G GA++GFA+TM + IL SM TAI     +  +++   + + ++   
Sbjct: 460 TTLIAAVVLYAYGTGAIKGFALTMSIGILASMLTAIVGTHGIYQWLLPKMRKERLNFWF 518



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 77/180 (42%), Gaps = 4/180 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                VGP +  + I+   + + +  I ++ ++ I +     + A   L+ ++   L   
Sbjct: 338 MEKRSVGPSLGADSIKASSIALALGFILVIAFMVIYYSM-AGVIANVALVGNLFLILAIM 396

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +LFG    L  +A ++  +G +V+  V++ +R+R+ +       S    I+   +     
Sbjct: 397 SLFGATLTLPGMAGIVLTVGMAVDANVIINERIRELLHE---GKSIAKAIEDGYDNAFTA 453

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  ++   I+ + +  +G   I  FA+ M+ GI+ +  ++I     I  ++     K  
Sbjct: 454 ILDANVTTLIAAVVLYAYGTGAIKGFALTMSIGILASMLTAIVGTHGIYQWLLPKMRKER 513


>gi|31376270|dbj|BAC77251.1| multidrug efflux pump SdeY [Serratia marcescens]
          Length = 1051

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 160/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIVMLAGVLAIM-----KLPIAQYPTIAPPA-------------VSISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQIIEQNMNGIDNLMYMSSTSDSSGSVTITLTFESGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  L         ++++    D       + +  +     D I  S
Sbjct: 110 KLSLATPLLPQEVQQQGLKVEKSSSSFLMVAGFVSDDPNMTQDDIADYVASNIKDPISRS 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     TT  ++      NN       G        
Sbjct: 170 SGVGEVQLFGAQ-YAMRIWLDPNKLNNYQLTTTDVTSAITEQNNQIAAGKLGGLPGGRGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +       +I +    +
Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGKILLKVNTDRFQVRLRDVAHIERGRKAM 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A +          +           
Sbjct: 276 PFTARYNGKPAAGLGIKLATGANALNTAKGVKDELAKMTPFFPQGMKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+         +K I          
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPIPKGDHGVKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++              +   L  +
Sbjct: 511 FFGWFNRMFEKSTHHYTDSVGNILRSTGRYLIIY 544



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 84/246 (34%), Gaps = 10/246 (4%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
              +  V       +   R  +        + +   G    L         +      L 
Sbjct: 254 NTDRFQVRLRDVAHIERGRKAMP--FTARYNGKPAAGLGIKLATGANALNTAKGVKDELA 311

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +     + + +    +T         E+++  I  +I+  + M +++     +   L  
Sbjct: 312 KMTPFFPQGMKVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQ---NFRATLIP 368

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + + +  T    A FG   N   +  ++  IG  V+D +VV + +     +    + 
Sbjct: 369 TIAVPVVLLGTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLP 426

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            ++   KS+ +  G  V  +M      +PMA +GGS       F+I +   + ++   ++
Sbjct: 427 PKEATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVAL 486

Query: 814 FIAAPI 819
            +   +
Sbjct: 487 ILTPAL 492



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 78/249 (31%), Gaps = 11/249 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +   + + V  S   S         +   N       L +       
Sbjct: 777  PFRMLPEDINKWYVRGTSGQMVPFSAFSSAKWEYGSPRLERYNGLPSMEILGQAAPGKST 836

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++  K  + I    T  + +              +  + I  +  L    + 
Sbjct: 837  GEAMNLMEQLASKLPSGIGYDWTGMSYQERLSGNQAP----ALYAISI-LVVSLCLAALY 891

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  L L +   L    + G+  ++ +   +LT IG    + +++ +  +  
Sbjct: 892  ESWVVPFSVMLVLPLGVIGALA-STMRGMNNDVYSQVGLLTTIGLFAKNAILIVEFAKDL 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            M+     ++  +   +++   L   + TS+A  + +LP+ +    G     +    +  G
Sbjct: 951  MEKEGKGLT--EATLEAVRMRLRPILMTSLAFILGILPLVISSGAGSGAQNAVGTGVMGG 1008

Query: 805  IVVAASSSI 813
            +  A   +I
Sbjct: 1009 MTTATVLAI 1017


>gi|298530969|ref|ZP_07018370.1| protein-export membrane protein SecF [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298508992|gb|EFI32897.1| protein-export membrane protein SecF [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 371

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 97/344 (28%), Positives = 156/344 (45%), Gaps = 49/344 (14%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANR 587
             F +I    +  FM  R   + IS++     +  L   G   YGIDF GG+ L +    
Sbjct: 1   MGFQIIRPDTSFDFMGKRKIALTISLVLLFLGLASLLVKGGPRYGIDFAGGVILQIQFES 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDG-EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            V++  + S L+  Q+  +S Q F     N  +      G + +  R       +     
Sbjct: 61  EVEMGKLESLLQEAQLPGMSLQTFGDRGDNEYLVRSSAEGLTTSDVREQTRQALQAEFQE 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----------------- 689
              T Q  E+VGP++  EL    +  +  + + + IYI  RF+                 
Sbjct: 121 DEFTFQRLEMVGPRVGEELRENALQALFFAVLLISIYISGRFEHKWFIAGFMAAGLGLGV 180

Query: 690 -----------------------------WYFALGAITTLILDITKTLGFFALFGIEFNL 720
                                          FALGA+  LI D+  T+G F+L   EF+L
Sbjct: 181 YLLKILGAPLVFLILAALLISIMFTWYLKLSFALGAVLALIHDVLITVGIFSLLNKEFDL 240

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           + VAA+LT+IGYS+ND +V+YDR+R+NM+   +  S    I+ S+N+TL R++ TS    
Sbjct: 241 SIVAALLTIIGYSLNDTIVIYDRIRENMRKKIS-ESLTQTINTSLNQTLSRTIVTSGTTL 299

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + +L + + GG +I  FA  +  G++V   SS+F+A+ ILL + 
Sbjct: 300 MVILSLLILGGGIIHDFAFALLVGVLVGTFSSVFVASSILLKLR 343


>gi|149926052|ref|ZP_01914315.1| hydrophobe/amphiphile efflux-1 family protein [Limnobacter sp.
           MED105]
 gi|149825340|gb|EDM84551.1| hydrophobe/amphiphile efflux-1 family protein [Limnobacter sp.
           MED105]
          Length = 1054

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/543 (11%), Positives = 156/543 (28%), Gaps = 32/543 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   GL       +    + ++P   P                V     
Sbjct: 9   RPVFAAVLSIFIMLAGLAA-----MRGLPIAQYPEIAPPVVQ---------VRAVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +   + ++       +       +I ++F      +  A  V   ++ 
Sbjct: 55  AEVIASTVAAPIENAINGVEDMMYMSSTSASSGVVEIMVTFEIGTDPDQAALNVNNRVKQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  + ++  +         + +     +         S  +    +D+I     T 
Sbjct: 115 VENILPQEVRRQGVTVNKGSSSFLQVLAFYSEDGRFDDFYTSNYVTLNVLDRIKRIPGTT 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P R+ QL  T   ++      N        G     +     Y
Sbjct: 175 NVQIFGAKDYAMRIWIKPDRMAQLKLTAGDIAAALNEQNAQFAAGKVGQAPNNNGQELVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +S             +  +    +                 +           
Sbjct: 235 TVTAQGRLS-------------EPEEFENILIRVNPDGSSLRLKDVARVELGSKDYDFTG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +   +     +T       + A         V          S   
Sbjct: 282 RINGKPATLVGVFLQPGANALDVAQTVKNTVDEIAADFPEGLDYAVPYDTTRFVEVSIRE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+++ +   +  L+   ++ ++++   A L LLG ++   ++ G+V
Sbjct: 342 VVKTLIEAMILVFIVVYVFLQNWRATLIPIVAVPVSLLGAFAGLYLLGYSINTLTLFGMV 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +    + +  S   +           +    +      + + F 
Sbjct: 402 LAIGIVVDDAIVVLENVERIMHEEGLSARKAAIKAMQEVTGPVIAIVLVLSAVFIPIGFL 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FAIT+ +++++S   A+++  A+ + +++++  K          +     
Sbjct: 462 GGLTGELYRQFAITIAIAVIVSGIVALTLTPALCVLLLKHEHKKPGKFFTAFNNWFARVT 521

Query: 538 IAI 540
              
Sbjct: 522 SKY 524



 Score = 85.5 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 55/493 (11%), Positives = 143/493 (29%), Gaps = 26/493 (5%)

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 ++AGL  +    I  Y +          +    +  +++   A     +I G+ 
Sbjct: 15  VLSIFIMLAGLAAMRGLPIAQYPEIAPPVVQVRAVYPGASAEVIASTVAAPIENAINGVE 74

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
             + ++  S       I            +     +R                V +    
Sbjct: 75  DMMYMSSTSASSGVVEIMVTFEIGTDPDQAALNVNNRVKQVENILPQEVRRQGVTVNKGS 134

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
              ++  A           +T+  +   ++  I R     ++ I     + +       +
Sbjct: 135 SSFLQVLAFYSEDGRFDDFYTSNYVTLNVLDRIKRIPGTTNVQIFGAKDYAMRIWIKPDR 194

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV-------- 593
             + +     I+   +  +             +    +   V A   +            
Sbjct: 195 MAQLKLTAGDIAAALNEQNAQFAAGKVGQAPNNNGQELVYTVTAQGRLSEPEEFENILIR 254

Query: 594 ------------VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                       V       +  D + +        +        +++   + ++    +
Sbjct: 255 VNPDGSSLRLKDVARVELGSKDYDFTGRINGKPATLVGVFLQPGANALDVAQTVKNTVDE 314

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           I    P            +     IR+ +  +I + I + I +++  + W   L  I  +
Sbjct: 315 IAADFPEGLDYAVPYDTTRFVEVSIREVVKTLIEAMILVFIVVYVFLQNWRATLIPIVAV 374

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +        L G   N   +  ++  IG  V+D +VV + +     ++   +S R  
Sbjct: 375 PVSLLGAFAGLYLLGYSINTLTLFGMVLAIGIVVDDAIVVLENV--ERIMHEEGLSARKA 432

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             K++ E  G  +   +      +P+   G   G +   FAI +A  ++V+   ++ +  
Sbjct: 433 AIKAMQEVTGPVIAIVLVLSAVFIPIGFLGGLTGELYRQFAITIAIAVIVSGIVALTLTP 492

Query: 818 PILLFIYDWRAKN 830
            + + +     K 
Sbjct: 493 ALCVLLLKHEHKK 505



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/269 (10%), Positives = 80/269 (29%), Gaps = 13/269 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                     G + +       + +S       S     +   N       L         
Sbjct: 771  QYRKSPTDIGNMYVRSNKGEMIPISAFAKVEFSQGPETLERFNNLPAVKLLGSGAPGISS 830

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++  + + +         +                  +++ A+ + + +  +
Sbjct: 831  GEAIQAIEDIAAEVLPDDFSYDFSGASFQEKRSEGSSSF-----ALVLGALMVFLILAAQ 885

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      +  +   +   L    +  +  ++     ++TL+G +  + +++ +    
Sbjct: 886  YEKWTLPFSVLLAMPFGLFGALLAVWMRDMTNDVYFQIGLVTLLGLAAKNAILIVEFA-- 943

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
             +      +S  +   ++        + TS A  + V+P+A           +    +  
Sbjct: 944  -VLKREEGMSALEASLEAARLRFRPILMTSFAFILGVVPLAFSSGAGAGARAAVGTGVMG 1002

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G+  A   +IF   P+   + D   K  R
Sbjct: 1003 GMTAATLLAIFFV-PLFYRLIDRGEKGGR 1030


>gi|289578222|ref|YP_003476849.1| protein-export membrane protein SecF [Thermoanaerobacter italicus
           Ab9]
 gi|297544503|ref|YP_003676805.1| protein-export membrane protein SecF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289527935|gb|ADD02287.1| protein-export membrane protein SecF [Thermoanaerobacter italicus
           Ab9]
 gi|296842278|gb|ADH60794.1| protein-export membrane protein SecF [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 303

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 78/297 (26%), Positives = 148/297 (49%), Gaps = 4/297 (1%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I  +        IS +  +  +  +F +G N+GIDF GG  + V   +P D + +
Sbjct: 3   QYRFNIDVISKTKIWFAISGIVILIGVIAMFINGFNWGIDFTGGTIMEVRIGKPFDPNDI 62

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              L   ++ D   Q    + + +        + +  + + ++        +  + +  +
Sbjct: 63  IKILNGYKVKDFQIQKIGTKGDEVSIKTSPIANEIRLSIIKDIY---KKYNLTENDLIMS 119

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           + VGP +  E+    I  ++++++AM IY+  RF++  +  AI  L+ D+   +  + +F
Sbjct: 120 QQVGPSLGEEIKFGMIGALLLASVAMFIYLGFRFEFEMSEAAIIGLLHDVFILISIYTIF 179

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N   +AAVLT+ GYSVND VV++DR+R N+K+   S  +  + + S+N+T+ RS+ 
Sbjct: 180 NITINAPFIAAVLTVFGYSVNDTVVIFDRIRDNLKIMKKS-DYSQIANVSVNQTMTRSIN 238

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++   I ++ M   G   +  FA+P+  GIV  A SSIFI+ P+ + I +   +  
Sbjct: 239 TTLTTLIMLVLMYFLGPKALKDFALPLLIGIVSGAYSSIFISTPLWVLIKNREKRRR 295


>gi|318606651|emb|CBY28149.1| putative aminoglycoside efflux pump [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 1043

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/556 (12%), Positives = 154/556 (27%), Gaps = 46/556 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + ++++             + +  +     D +   
Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT  +       N+       G     D+ 
Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E      A L           +          
Sbjct: 276 DYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPHGLEAKIAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +     S+    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMSQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  +++ S+  A+ +  A+         +K I          
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVHSVLVALILTPALCAT-----MLKPIKPGHHHAKRG 510

Query: 534 IPDCIAIQFMRARFWG 549
                   F R     
Sbjct: 511 FFGWFNRMFDRNAHRY 526



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 87/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +    +++    ++T   P 
Sbjct: 260 VTLGDVAKIEMGAEKYDYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+++
Sbjct: 380 FAILSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F+I +   +V +   ++ +   +
Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVHSVLVALILTPAL 492



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++    L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRLRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTCVMGGMISATVLAIFFVPLFFVLVRRR 1029


>gi|78100762|pdb|1T9T|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
           Multidrug Efflux Pump
 gi|78100763|pdb|1T9U|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
           Multidrug Efflux Pump
 gi|78100764|pdb|1T9V|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
           Multidrug Efflux Pump
 gi|78100765|pdb|1T9W|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
           Multidrug Efflux Pump
 gi|78100766|pdb|1T9X|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
           Multidrug Efflux Pump
 gi|78100767|pdb|1T9Y|A Chain A, Structural Basis Of Multidrug Transport By The Acrb
           Multidrug Efflux Pump
          Length = 1049

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQA 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|123441492|ref|YP_001005478.1| aminoglycoside/multidrug efflux system [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088453|emb|CAL11245.1| multidrug efflux protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 1043

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + ++++             + +  +     D +   
Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT  +       N+       G     D+ 
Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E      A L           +          
Sbjct: 276 DYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPHGLEAKIAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +     S+    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMSQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  ++++S+  A+ +  A+         +K I          
Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVALILTPALCAT-----MLKPIKPGHHHAKRG 510

Query: 534 IPDCIAIQFMRARFWG 549
                   F R     
Sbjct: 511 FFGWFNRMFDRNAHRY 526



 Score = 86.7 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 88/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +    +++    ++T   P 
Sbjct: 260 VTLGDVAKIEMGAEKYDYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+++
Sbjct: 380 FAILSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F++ +   +V++   ++ +   +
Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVALILTPAL 492



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++    L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRLRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029


>gi|238919030|ref|YP_002932544.1| RND transporter, AcrB protein, [Edwardsiella ictaluri 93-146]
 gi|238868598|gb|ACR68309.1| RND transporter, AcrB protein, putative [Edwardsiella ictaluri
           93-146]
          Length = 1050

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/688 (10%), Positives = 184/688 (26%), Gaps = 51/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P+  P               + +    
Sbjct: 8   RPIFAWVLAIIMMLAGALAIM-----SLPVAQYPTVAPPA-------------VTISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAATVQNSVTQVIEQNMNGIDNLMYMSSTSDSAGNASITLTFEAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D +  +
Sbjct: 110 KLQLAMPSLPQEVQQQGVSVDKASSSILLVAGFISEDGSLSQDDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L +   T   +     + NN   G   G        
Sbjct: 170 QGVGSVQLFGSQ-YAMRIWLDPNKLNKYNLTPVDVVSQIKVQNNQIAGGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    R        +       
Sbjct: 229 QLNASIIVQTRL-------------KDPTEFGKILLKVQQDGSRVLLRDVARVELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A L          +           
Sbjct: 276 GTIARYNGKPAAGIAVKLATGANALDTAKAVKTELARLAPYFPASLKTVYPYDTTPFVQL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L ++G ++   ++
Sbjct: 336 SIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAVLEIVGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +          ++       
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPALCATMLKPIAKGDHGVQTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D I         + V   ++     +  +         + +G +    
Sbjct: 516 NRLFEKSTHHYTDSIGRILRGTGRYLVIYLLIVVGMGLLFIRLPTSFLPEEDQGVLLTMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                       + L+ +    ++ +  + E  F V      G           +K    
Sbjct: 576 QLPPGATQERTNNVLKQVSHYYLTKEKDNVESVFTVSGFGFSGQGQNNGLAFVSLKPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIV 671
                + +            ++    + 
Sbjct: 636 RKGDQNKVTAIIQRAAVAFSKINDAMVY 663



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 81/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +      +        +        +++   + ++    ++    P S   
Sbjct: 264 DVARVELGAENYGTIARYNGKPAAGIAVKLATGANALDTAKAVKTELARLAPYFPASLKT 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + + + + +++  +     L     + + +  T    
Sbjct: 324 VYPYDTTPFVQLSIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 EIVGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKKSMEQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 61/166 (36%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +L G+  ++     +LT IG S  + +++ +     M          +   +++   L 
Sbjct: 915  TSLRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAVDLMHKEGKG--LVEATLEAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVMPLVISNGAGSGAQNAVGTGVMGGMVSATILAI 1018


>gi|146387264|pdb|2HQG|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
           Of The Putative Proton Relay Pathway
          Length = 1053

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 72/234 (30%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   +  S+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMASLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|24987358|pdb|1IWG|A Chain A, Crystal Structure Of Bacterial Multidrug Efflux
           Transporter Acrb
 gi|114793710|pdb|2DHH|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
           Functionally Rotating Mechanism
 gi|114793711|pdb|2DHH|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
           Functionally Rotating Mechanism
 gi|114793712|pdb|2DHH|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
           Functionally Rotating Mechanism
 gi|114793726|pdb|2DR6|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
           Functionally Rotating Mechanism
 gi|114793727|pdb|2DR6|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
           Functionally Rotating Mechanism
 gi|114793728|pdb|2DR6|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
           Functionally Rotating Mechanism
 gi|114793729|pdb|2DRD|A Chain A, Crystal Structure Of A Multidrug Transporter Reveal A
           Functionally Rotating Mechanism
 gi|114793730|pdb|2DRD|B Chain B, Crystal Structure Of A Multidrug Transporter Reveal A
           Functionally Rotating Mechanism
 gi|114793731|pdb|2DRD|C Chain C, Crystal Structure Of A Multidrug Transporter Reveal A
           Functionally Rotating Mechanism
          Length = 1053

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|192291545|ref|YP_001992150.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris
           TIE-1]
 gi|192285294|gb|ACF01675.1| protein-export membrane protein SecF [Rhodopseudomonas palustris
           TIE-1]
          Length = 372

 Score =  200 bits (507), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/302 (38%), Positives = 187/302 (61%), Gaps = 6/302 (1%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
              L    ++PD     F R R     IS + SI +I L FTHGLN+GIDF+GG  L V 
Sbjct: 22  FGWLPSLRIVPDNTHFDFTRFRRISFPISAVLSIAAITLFFTHGLNFGIDFRGGTLLEVR 81

Query: 585 ANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           A+    D++ +R  L  L +GD+  Q F G    L+R+  QPG   AQ   ++ V+  + 
Sbjct: 82  AHSGAADIAGMRETLSKLSLGDVQLQQFGGPAEVLIRIAEQPGGDQAQQVAVQKVRAAL- 140

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   +  E+VGP++S EL+  G++G++++ + +L+Y+W RF+W FALGA+   + D
Sbjct: 141 --GDSVDYRRVEVVGPRVSSELLAFGMLGLMVAILGILVYLWFRFEWQFALGAMIANVHD 198

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T+GF ++  ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y   +    L+++
Sbjct: 199 IVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNE 257

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822
           SIN TL RS+ T +   +++L + ++GG  I SF   M FG ++V   +SIFIAAPIL++
Sbjct: 258 SINSTLSRSIITHVTVTLALLALLLFGGHAIHSFTAVMMFGVVLVGTYTSIFIAAPILIY 317

Query: 823 IY 824
           + 
Sbjct: 318 LG 319


>gi|319796462|ref|YP_004158102.1| protein-export membrane protein secf [Variovorax paradoxus EPS]
 gi|315598925|gb|ADU39991.1| protein-export membrane protein SecF [Variovorax paradoxus EPS]
          Length = 319

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/302 (28%), Positives = 153/302 (50%), Gaps = 5/302 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       +S +    ++  LF  GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFRIHKTIPFMRHALVLNIVSFVTFALAVFFLFHRGLHLSVEFTGGTVMEVAYKQSAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR  +  L   ++  Q+F       V+++      +  T+  + V   +  I P   
Sbjct: 61  VGKVREVVAKLGYQEVQVQSFGTS----VQIRLPVAKGMTSTQQSDQVMGALKAIEPTVE 116

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +++ E VGP++  EL   G+  + +  + ++IY+  RF+W FAL  +   + D+   LGF
Sbjct: 117 LRSNEFVGPQVGDELTSNGLKALAMVVVGIMIYLAFRFEWKFALATVLANLHDVVIILGF 176

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AAVL ++GYSVN+ VV++DR+R+N + Y   ++  ++ID +I  T+ 
Sbjct: 177 FAFFQWEFSLAVLAAVLAVLGYSVNESVVIFDRVRENFRRYRK-MTTAEVIDSAITSTIS 235

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M  +GG  +  FA+ +  GI     SS F+AA I +++   R   
Sbjct: 236 RTIITHGSTQLVVLSMFFFGGPTLHYFALALTIGICFGIYSSCFVAAAIAMWLGVKREDL 295

Query: 831 AR 832
            +
Sbjct: 296 IK 297


>gi|262042821|ref|ZP_06015974.1| inner membrane multidrug efflux protein BpeB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259039888|gb|EEW41006.1| inner membrane multidrug efflux protein BpeB [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 1036

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 73/682 (10%), Positives = 186/682 (27%), Gaps = 42/682 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  L     Q  + ++P+  P                     +
Sbjct: 8   RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +     +  ITL+F      +    +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D   +   + S  +     D I       
Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPTTTQDDISDYVASNVKDPISRLNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D + L +   T   +     + N+       G            
Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALQVQNDQIAAGQLGGTPALKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +                      I           
Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +          +   T        A L+         +           S   
Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++ G+V
Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   + +   S+    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
           GG      R F+IT+  ++ +S+  A+ +  A+   +          +       +    
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                  + ++        + V   ++    ++  +         + +G     +     
Sbjct: 520 QSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                 +  L+++    +  +  + E  F V      G           +K         
Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDE 639

Query: 649 STIQNTEIVGPKISRELIRKGI 670
           +++++          ++    +
Sbjct: 640 NSVESIIKRATVAFSQIKDAMV 661



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +            G + L V A+  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680
           +   G +   T      K    +      ++           ++ I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    ++FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +S ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 854  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLA 913

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+  ++     +LT IG S  + +++ +  +  M+         +   ++    L 
Sbjct: 914  ATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--IIEATLEASRMRLR 971

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G++ A   +I
Sbjct: 972  PILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATLLAI 1017


>gi|288919009|ref|ZP_06413350.1| protein-export membrane protein SecF [Frankia sp. EUN1f]
 gi|288349549|gb|EFC83785.1| protein-export membrane protein SecF [Frankia sp. EUN1f]
          Length = 411

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 133/306 (43%), Gaps = 9/306 (2%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L      + F+  R     +S +     +  +   G   GI+FKGG      AN
Sbjct: 1   MSMLGRLYRSEFHVDFVGRRRVWYVVSGVLLTICVLSMIVRGFTLGIEFKGGAVFQFPAN 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +  V+  L    +          E +   R+Q          RV + + K+     
Sbjct: 61  GGT-VEQVKDVLSDSGVDASDSVVQQLETSKQFRVQTPTLSDEETARVEDALAKRFNVAN 119

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P         VG      +  K I G+I+  I ++IY+ +RF+W  A+ A+  L+ D+  
Sbjct: 120 PD-ENIAVSTVGSSWGSTITNKAIKGLIVFLILVMIYLSVRFEWKMAVAAMAALVHDLVV 178

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKS 764
           T+G ++L G E   + + AVLT++G+S+ D VVV+DR+R+N     T    ++ +  + +
Sbjct: 179 TMGIYSLVGFEVTPSTIIAVLTILGFSLYDTVVVFDRVRENTAGMATSSRRTYAEATNDA 238

Query: 765 INETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +NETL RS+ TS+ A I V  +        G   +   A+    GI     SS+F A P+
Sbjct: 239 LNETLVRSLNTSLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPL 298

Query: 820 LLFIYD 825
           L+ +  
Sbjct: 299 LVDLKR 304


>gi|288936790|ref|YP_003440849.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
 gi|288891499|gb|ADC59817.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
          Length = 1048

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 68/689 (9%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLSIL-----KLPVAQYPTIAPPA-------------ISITAMY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117
                  +Q      +   +      ++      +     ITL+F      +    +V  
Sbjct: 50  PGADAETVQNTVTQVIEQNMNGIDHLMYMSSNGDSTGTATITLTFESGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +         +++          +  + S  +     D I  +
Sbjct: 110 KLALATPLLPQEVQQQGISVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISALKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTNTE-------------EFGNILLKVNQDGSQVRLRDVAKIELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +++  +  S         + 
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGSHGATTGFFGWF 515

Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                                   + V   I+    +   +         + +G      
Sbjct: 516 NRMFDKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAWLFVRLPSSFLPDEDQGVFLSMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +    ++ +  + E  F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLDEMTNYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + ++           ++    +  
Sbjct: 636 RPGEENKVEAITGRAMGYFSQIKDAMVFA 664



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +     K+    
Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMSLMEELAGKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|269138366|ref|YP_003295066.1| RND family, acridine/multidrug efflux pump [Edwardsiella tarda
           EIB202]
 gi|267984026|gb|ACY83855.1| RND family, acridine/multidrug efflux pump [Edwardsiella tarda
           EIB202]
 gi|304558396|gb|ADM41060.1| RND efflux system, inner membrane transporter CmeB [Edwardsiella
           tarda FL6-60]
          Length = 1050

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/688 (10%), Positives = 184/688 (26%), Gaps = 51/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P+  P               + +    
Sbjct: 8   RPIFAWVLAIIMMLAGALAIM-----SLPVAQYPTVAPPA-------------VTISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAATVQNSVTQVIEQNMNGIDNLMYMSSTSDSAGNASITLTFEAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D +  +
Sbjct: 110 KLQLAMPSLPQEVQQQGVSVDKASSSILLVAGFISEDGSLSQDDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L +   T   +     + NN   G   G        
Sbjct: 170 QGVGSVQLFGSQ-YAMRIWLDPNKLNKYNLTPVDVVSQIKVQNNQIAGGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    R        +       
Sbjct: 229 QLNASIIVQTRL-------------KDPTEFGKILLKVQQDGSRVLLRDVARVELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A L          +           
Sbjct: 276 GTIARYNGKPAAGIAVKLATGANALDTAKAVKTELAKLAPYFPASLKTVYPYDTTPFVQL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L ++G ++   ++
Sbjct: 336 SIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAILEIVGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +          ++       
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPALCATMLKPIAKGDHGVQTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + V   ++     +  +         + +G +    
Sbjct: 516 NRLFEKSTHHYTDSVGRILRGTGRYLVIYLLIVVGMGLLFIRLPTSFLPEEDQGVLLTMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                       + L+ +    ++ +  + E  F V      G           +K    
Sbjct: 576 QLPPGATQERTNNVLKQVSQYYLTKEKDNVESVFTVSGFGFSGQGQNNGLAFVSLKPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIV 671
                + +            ++    + 
Sbjct: 636 RKGDQNKVTAIIQRAAGAFSKINDAMVY 663



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 81/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +      +        +        +++   + ++    K+    P S   
Sbjct: 264 DVARVELGAENYGTIARYNGKPAAGIAVKLATGANALDTAKAVKTELAKLAPYFPASLKT 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + + + + +++  +     L     + + +  T    
Sbjct: 324 VYPYDTTPFVQLSIDEVVKTLLEAIVLVFVVMYLFLQNIRATLIPTIAVPVVLLGTFAIL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 EIVGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKKSMEQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 61/166 (36%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +L G+  ++     +LT IG S  + +++ +     M          +   +++   L 
Sbjct: 915  TSLRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAVDLMHKEGKG--LVEATLEAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVMPLVISNGAGSGAQNAVGTGVMGGMVSATILAI 1018


>gi|114563865|ref|YP_751379.1| preprotein translocase subunit SecD [Shewanella frigidimarina NCIMB
           400]
 gi|114335158|gb|ABI72540.1| protein-export membrane protein SecD [Shewanella frigidimarina
           NCIMB 400]
          Length = 616

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 159/522 (30%), Positives = 271/522 (51%), Gaps = 35/522 (6%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD  + +    +    + RS L++E I
Sbjct: 104 NLAPATPEWLEAVGGSPMKLGLDLRGGVHFLMEVDMGEAIRKMEEAKIADFRSQLREEKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +R+    I + F D+   +     +             D       +  E  +   
Sbjct: 164 RYAGIRKTPKGIAIKFRDAETVDQAETYLKTRSN--------DMTYTDASSGNEFMLLAT 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +S   + Q+   A++Q++  IR R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 216 MSDAYLKQIKEEALQQNITTIRNRVNELGVAEPVVQRQGAERIIVELPGVQDTARAKEIL 275

Query: 207 GTTAKMSFHKVLPNNSKKGF-----MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V                G    +  +G   +++ +V ++G H+ GA   F
Sbjct: 276 GATASIEFRMVDDKADVSAAANGRVPAGAEVYQRREGGIAVLKKEVMLTGDHITGAQPTF 335

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           D  + +P V I+ D  G   F  VT+DNIGKP+A +      +                 
Sbjct: 336 DEYS-RPQVAINLDAKGGSIFSNVTKDNIGKPMATLFIEYKDSGTRNPDGTVKMTRIEEV 394

Query: 322 NFTIE-----------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                                  A  LA +LRAG+L   + IVEER +G  LG+++I  G
Sbjct: 395 ISVATIQARLGRNFVITGLEHTEAQSLALLLRAGALIAPVTIVEERTIGPSLGAENIQNG 454

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A++ G+V++++FM+V Y  +G +A+ ++  N+I+ + ++S++  A LTLP IAG+VL 
Sbjct: 455 VQAMIWGMVVVLVFMMVYYRAFGFIANLALLANLIMVVGVMSMIPGAVLTLPGIAGMVLT 514

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD N+L+ ERIREE    +SV  ++  G+  A+STI D+NIT  +  ++LF  G G
Sbjct: 515 VGMAVDGNVLIFERIREELLGGRSVQQAIHEGYGNAFSTIADANITTFMTALILFAVGTG 574

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           AV+GFA+T+ + I  SMFTAI   R+++  +   K++KS+ I
Sbjct: 575 AVKGFAVTLMIGIATSMFTAIVGTRSIVNAVWGGKRVKSLSI 616



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 93/237 (39%), Gaps = 6/237 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+   ++++  I            +   +              +  +   ++   TI   
Sbjct: 380 RNPDGTVKMTRIEEVISVATIQARLGRNFVITGLEHTEAQSLALLLRAGALIAPVTIVEE 439

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +GP +  E I+ G+  +I   + +L+++ + ++  F   A   L+ ++   +G  ++ 
Sbjct: 440 RTIGPSLGAENIQNGVQAMIWGMVVVLVFMMVYYR-AFGFIANLALLANLIMVVGVMSMI 498

Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    L  +A ++  +G +V+  V++++R+R+ +       S +  I +          
Sbjct: 499 PGAVLTLPGIAGMVLTVGMAVDGNVLIFERIREELLG---GRSVQQAIHEGYGNAFSTIA 555

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAK 829
             ++  F++ L +   G   +  FA+ +  GI  +  ++I     I+       R K
Sbjct: 556 DANITTFMTALILFAVGTGAVKGFAVTLMIGIATSMFTAIVGTRSIVNAVWGGKRVK 612


>gi|323702056|ref|ZP_08113724.1| protein-export membrane protein SecF [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532938|gb|EGB22809.1| protein-export membrane protein SecF [Desulfotomaculum nigrificans
           DSM 574]
          Length = 292

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 89/293 (30%), Positives = 154/293 (52%), Gaps = 8/293 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
              ++ R     IS+   +  I  L T GLN GIDF GG  + +  N+P  +  VR+ L 
Sbjct: 2   FHIIKLRKIWYIISLAIIVVGIISLATQGLNKGIDFTGGNIIELKFNKPTSMQDVRAALT 61

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             ++ D   Q+            Y            +     I++ +  +T+   E+VGP
Sbjct: 62  EYKLEDSQVQSSGDN-------SYLIRTRALSQEESDKAFNGISQKLGGATMLRNELVGP 114

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I +EL +K I+ ++++++ M+IYI  RF++   + AI  L+ D+   +G  +LF IE +
Sbjct: 115 VIGKELTQKAILALVVASVLMIIYITWRFEFLQGIAAILALLHDVLVMVGLASLFQIEID 174

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            T VAAVLT+IGYS+ND +V++DR+R+NM+L+       D+I+ ++ +T+ RS+ T +  
Sbjct: 175 STFVAAVLTIIGYSINDTIVIFDRIRENMRLHRKEE-LIDVINGALWQTMARSINTVLTV 233

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              ++ +   GGS I +F   +  G++  A SSIF A+P+       + +  R
Sbjct: 234 VFVLVSLFFLGGSTIHNFVGLLLIGVISGAYSSIFNASPLWYDFRRMQKQRKR 286


>gi|169835831|ref|ZP_02869019.1| Protein translocase subunit secF [candidate division TM7
           single-cell isolate TM7a]
          Length = 323

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 155/301 (51%), Gaps = 6/301 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             I ++ ++ R   +GIS    + S+  LFT  LN G+DFKGG  + +  ++ +D + V 
Sbjct: 1   MKINLKVIKHRKLYLGISAAMVLISLISLFTIKLNLGVDFKGGELIQLKYSKKIDQNAVS 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S L SL       +    + +                     V  ++ +      +   E
Sbjct: 61  STLNSLIGKIPQMKAKRVQFSDTDNTVI-IRTEQMSGTQKAKVMSELKQNTGKFEVVKNE 119

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  I +EL       ++I +I ++IYI +RF++ +A+  I  LI D+    G   +  
Sbjct: 120 TVGAVIGKELTANAFQALLIGSILIIIYITVRFEFIYAIAGIVALIHDVIIAFGVITMLR 179

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-----ISFRDLIDKSINETLG 770
            E +   +AA+LT++GYS+ND +VV+DR+R+N+K   +      +SF ++I+KSIN+   
Sbjct: 180 YEIDTPFIAAILTILGYSINDTIVVFDRIRENIKKNRSGRNKVSMSFGEIIEKSINQVFT 239

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           RS+YTS+    SV+ + + GG  + +F++ +  G++V   SS+F+A+P++  +   + + 
Sbjct: 240 RSIYTSLTTLFSVIVLLILGGDTLKTFSMTLFVGMLVGTYSSVFVASPLVYIMKKGKDEP 299

Query: 831 A 831
            
Sbjct: 300 K 300


>gi|152980474|ref|YP_001354627.1| acriflavin resistance transmembrane protein [Janthinobacterium sp.
           Marseille]
 gi|151280551|gb|ABR88961.1| acriflavin resistance transmembrane protein [Janthinobacterium sp.
           Marseille]
          Length = 1049

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/551 (12%), Positives = 160/551 (29%), Gaps = 46/551 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G+L           + ++P+  P               +V+    
Sbjct: 8   RPVFAWVLAIFIMLAGVLAI-----TSLPVSQYPNIAPP-------------QVVVTATY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +   +G+     +   N   +IT++F      +  A  V  
Sbjct: 50  PGATAQTLDDSVTSLIEQEMNGADGLQYIESQSQANGVVQITVTFTPGTNPDLAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L     +  +  T  +   ++    +        +     + R  ++++   
Sbjct: 110 RLKRVEARLPAAVTQQGVQVTKSRSNFLLFIGLSSTDGTLDPVALGDYLSRNVLNEVKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L  L  T + +S      N    G   G      + 
Sbjct: 170 PGVGQAQLFGT-ERAMRIWIDPTKLVGLNLTPSDVSSAISTQNALVAGGTLGDLPSPSTQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    +++                +    +                 I       
Sbjct: 229 QIAATVVVNGQLT-------------SPEQFGNIVLRANKDGSSVRLRDVARIEVGGQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +   T          L           +          
Sbjct: 276 ATSGRLDGKPSSFIGVQLTPTANALGTATAVHKKMDELSKYFPAGVKYTIPYDTSKFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++ L+    + + ++ T A L L G ++ + ++
Sbjct: 336 SIEEVVKTLFEAIILVFLVMYLFLQNIRYTLIPTIVVPVALLGTFATLLLFGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    +    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLSPRDATRKAMGQITGALIGITLVLIAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFG   G   R F+++M  S++ S+  A ++  A+   +     +K ++         
Sbjct: 456 MAFFGGAVGAIYRQFSLSMVASMVFSVLMAFTLTPALCATL-----LKPVEAGHHHEKRG 510

Query: 534 IPDCIAIQFMR 544
                   F +
Sbjct: 511 FFGWFNRHFNK 521



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 94/279 (33%), Gaps = 9/279 (3%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +                     +    + + AN+      +R        G     +   
Sbjct: 222 LPSPSTQQIAATVVVNGQLTSPEQFGNIVLRANKDGSSVRLRDVARIEVGGQSYATSGRL 281

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGI 670
           +      +  Q   +         V KK+ E+           +    S+ +   I + +
Sbjct: 282 DGKPSSFIGVQLTPTANALGTATAVHKKMDELSKYFPAGVKYTIPYDTSKFVKISIEEVV 341

Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +  + I + + +++  +   + L     + + +  T     LFG   N+  +  ++  
Sbjct: 342 KTLFEAIILVFLVMYLFLQNIRYTLIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLA 401

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + +     +    +S RD   K++ +  G  +  ++      +PMA +
Sbjct: 402 IGILVDDAIVVVENV--ERIMSEEGLSPRDATRKAMGQITGALIGITLVLIAVFIPMAFF 459

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           GG+V      F++ M   +V +   +  +   +   +  
Sbjct: 460 GGAVGAIYRQFSLSMVASMVFSVLMAFTLTPALCATLLK 498



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 69/181 (38%), Gaps = 12/181 (6%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK---WY 691
            E + +    +  L      E  G  +  +        +  +S IA+ + +   ++     
Sbjct: 834  EAMAEMEAMVAKLPPGFGFEWTGQSLEEKTSGSQAPALYALSLIAVFLVLAALYESTSIP 893

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            F++  +  L +     LG   L G+  ++     ++ ++G S  + +++ +  +    L 
Sbjct: 894  FSVMLVVPLGI-FGALLGV-TLRGMPNDVYFKVGMIAVVGLSAKNAILIIEFAKD---LQ 948

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
                   +   ++++      + TS+A  + VLP+ +    G +   +    +  G++ A
Sbjct: 949  AQGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLVLASGAGSASQRAIGTGVMSGMITA 1008

Query: 809  A 809
             
Sbjct: 1009 T 1009


>gi|312797143|ref|YP_004030065.1| Acriflavin resistance plasma membrane protein [Burkholderia
           rhizoxinica HKI 454]
 gi|312168918|emb|CBW75921.1| Acriflavin resistance plasma membrane protein [Burkholderia
           rhizoxinica HKI 454]
          Length = 1057

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 157/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G++        Q  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVVSIF-----QLPVAQYPTIAPPA-------------IQVSANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGSATITLTFAPGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++     T      +++             + +  +  +  D I   
Sbjct: 110 KLQLATLLLPQVVQQLGTKVTKSSSSFLLVMAFVSKDGSMSKYDLANYVASKVQDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L     T   +    +  N    G   G    +   
Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDPTKLTNYSLTPIDVQQALLTQNVQVAGGQLGGTPAKPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        R        +       
Sbjct: 229 MLQATITEATLL-------------NTPEQFGNILLKVNPDGSRVRLKDVARVELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATAKAVRQKIDELSKYFPQGLVVEYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+++  G ++ + S+
Sbjct: 336 SIEEVVKTLFEGIVLVFLVMYLFLQNLRATVIPTIAVPVVLLGTFAIMNAAGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPREATRKAMGQITGALIGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +   GG      R F++T+  ++++S+  A+ +  A+   I     +K I      +   
Sbjct: 456 VALSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPAGHHEQKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F R+R             S   L  +
Sbjct: 511 FFGWFNRTFNRSRDKYHDGVQHVIRRSGRWLIIY 544



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +                 +++A  + +     ++++  
Sbjct: 258 SRVRLKDVARVELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRQKIDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  +    + + + +++  +     +     + + + 
Sbjct: 318 PQGLVVEYPYDTTPFVKLSIEEVVKTLFEGIVLVFLVMYLFLQNLRATVIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+ ++  ++  IG  V+D +VV + +     +    +S R+   K++
Sbjct: 378 GTFAIMNAAGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  +  ++      +P+A+ GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALIGVALVLSAVFVPVALSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 82/253 (32%), Gaps = 8/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V +     +     +      G    + ++G     ++ Q  PG S  Q           
Sbjct: 790  VRSASGTMVPFTSISTGHWTFGSPKLERYNGISAVEIQGQAAPGKSTGQAMAAMEAIAAK 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                             +   +      + +++  + +     +   W      I  + L
Sbjct: 850  LPAGIGFEWTGLSFQERQSGSQAPILYGISILVVFLCLA---ALYESWSIPFAVILVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    L G+E ++     +LT +G S  + +++ +  R+        +S      
Sbjct: 907  GVIGALLAVTLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARE--LQQKEGMSAMAAAM 964

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + V P+AV    G     +    +  G++ A   +IF+    
Sbjct: 965  EAARLRLRPILMTSLAFILGVFPLAVSSGAGSGSQHAIGTGVIGGMLTATFLAIFMIPMF 1024

Query: 820  LLFIYDWRAKNAR 832
             + I D    + +
Sbjct: 1025 YVVIRDRFGSDNK 1037



 Score = 41.6 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 61/536 (11%), Positives = 137/536 (25%), Gaps = 34/536 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P              +G   ++++  
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFM------RLPTSFLPDED-----------QGMMFVLVQA- 577

Query: 62   EDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLF 118
                          +++ +L   ++ I              SFA   +       ++  +
Sbjct: 578  PSGSTQERTAKVLQDVQHYLLEDEKDIVESVFTVNG----FSFAGRGQNAGLAFVRMKDY 633

Query: 119  LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
             Q   S  +     + +          ++   N   +         +   Q    +G  +
Sbjct: 634  SQRHASDQSAQALVHRMFGHFATYKDAMVIPVNPPSIPELGTASGFDFELQDRGGLGH-D 692

Query: 179  STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +        +          R   L  T             +       +        
Sbjct: 693  KLMAARNQLLGMAANDPMLALVRPNGLNDTPQFKINIDREKAQALGVSPSAIDQTFSIAW 752

Query: 239  NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                V + ++  G        +  P    P    ++    A                   
Sbjct: 753  ASQYVNNFLDTDGRIKKVYLQSDAPFRMNPEDLANWYVRSASGTMVPFTSISTGHWTFGS 812

Query: 299  DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                    +    I    A          A    A      +  +   +       +  S
Sbjct: 813  PKLERYNGISAVEIQGQAAPGKSTGQAMAAMEAIAAKLPAGIGFEWTGL----SFQERQS 868

Query: 359  DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
             S       I   +V + L  +             + L VI  L  ++L G    +    
Sbjct: 869  GSQAPILYGISILVVFLCLAALYESWSIPFAVILVVPLGVIGALLAVTLRGLENDVFFQV 928

Query: 419  GIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G++  +GL+  + IL+ E  RE + ++  S   +           I  +++  ++    L
Sbjct: 929  GLLTTVGLSAKNAILIVEFARELQQKEGMSAMAAAMEAARLRLRPILMTSLAFILGVFPL 988

Query: 478  FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
                  G G+       +   +L + F AI ++    + I       +      + 
Sbjct: 989  AVSSGAGSGSQHAIGTGVIGGMLTATFLAIFMIPMFYVVIRDRFGSDNKPAGEPTP 1044


>gi|170691383|ref|ZP_02882548.1| protein-export membrane protein SecD [Burkholderia graminis C4D1M]
 gi|170143588|gb|EDT11751.1| protein-export membrane protein SecD [Burkholderia graminis C4D1M]
          Length = 691

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 165/517 (31%), Positives = 270/517 (52%), Gaps = 24/517 (4%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            I  + L  A P +L                + LGLDLRGG H +L+VD    +N  L  
Sbjct: 108 FIVALNLQSASPRWLTALHA---------LPMYLGLDLRGGVHFLLQVDMAGALNKKLDS 158

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            + + R+ L+   I    + ++   + ++FAD    +  A ++   +  +       P  
Sbjct: 159 DASDARTLLRDNNIRDGGVNRVNQTVVINFADQATADAAAKQLGRGIGELQWASQNSPDG 218

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
           ++ +  T        +      V   A++Q++  +  R++++G++E  IQ+ G+ RI+++
Sbjct: 219 SVQLVGT-------FTPTVQKAVQDAALKQNITTLHNRVNELGVAEPVIQQQGTDRIVVE 271

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           LPG QD ++ + ++G TA +      P     N       G       +    L+  ++ 
Sbjct: 272 LPGVQDTAKAKDIIGRTATLEARLADPVNTHPNPSDPVPPGDELFTQGNQTPVLLRKQII 331

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTA 305
            +G  +  A+A FD    +P V+I  D  G R    V+RDNIGKP+A+VL  +    +  
Sbjct: 332 FTGDRIIDASAGFDEHQ-RPSVNIRLDSAGGRAVRSVSRDNIGKPMAMVLFEKGKGEVLT 390

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               Q+    + QI+G  T + A  LA +LRAGSL   ++I+EER +G  LG+D+I KG 
Sbjct: 391 VATIQSELGDRFQITGQATPQGAADLALLLRAGSLAAPMDIIEERTIGPSLGADNIKKGF 450

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            ++V G   I +FMI  Y  +G+++   + +N++L +A+LS+L ATLTLP IA I L +G
Sbjct: 451 HSVVWGFAAIAVFMIAYYMLFGVISMIGLSVNLLLLVAVLSMLQATLTLPGIAAIALALG 510

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +A+D+N+L+NER+REE R       ++  G++ A++TI DSN+T LIA V L  FG G V
Sbjct: 511 MAIDANVLINERVREELRNGAPPQLAIQNGYAHAWATILDSNVTTLIAGVALLAFGSGPV 570

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           RGFAI   + IL SMF+A+   R ++      KK   
Sbjct: 571 RGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKKKLK 607



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 80/185 (43%), Gaps = 4/185 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I     +GP +  + I+KG   V+    A+ +++   +   F + ++  L +++   +
Sbjct: 429 MDIIEERTIGPSLGADNIKKGFHSVVWGFAAIAVFMIAYY-MLFGVISMIGLSVNLLLLV 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++      L  +AA+   +G +++  V++ +R+R+ ++        +  I       
Sbjct: 488 AVLSMLQATLTLPGIAAIALALGMAIDANVLINERVREELR---NGAPPQLAIQNGYAHA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ + +  +G   +  FAI    GI+ +  S++F +  I+   Y  + 
Sbjct: 545 WATILDSNVTTLIAGVALLAFGSGPVRGFAIVHCIGILTSMFSAVFFSRGIVNLWYGGKK 604

Query: 829 KNARI 833
           K   +
Sbjct: 605 KLKSL 609


>gi|146387263|pdb|2HQF|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
           Of The Putative Proton Relay Pathway
          Length = 1053

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAANAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|238792076|ref|ZP_04635712.1| Acriflavine resistance protein B [Yersinia intermedia ATCC 29909]
 gi|238728707|gb|EEQ20225.1| Acriflavine resistance protein B [Yersinia intermedia ATCC 29909]
          Length = 1039

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 70/556 (12%), Positives = 154/556 (27%), Gaps = 46/556 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDKLLYMSSQSSNSGSASITLTFQAGTDPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + ++++             + +  +     D +   
Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMLAFVSTDGSMDKQDIADYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT  +       N+       G     D+ 
Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDVVSAIQSQNSQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEQFRAITLRVNQDGSLVTLGDVAKIEMGAERY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E      A L           +          
Sbjct: 276 DYLSRFNGQAASGMSIKLASGANELQTDELVKARIAELAPFFPHGLEAKIAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+         +K I          
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIQPGHHHAKRG 510

Query: 534 IPDCIAIQFMRARFWG 549
                   F R     
Sbjct: 511 FFGWFNRMFDRNTHRY 526



 Score = 84.7 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 86/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +    +++    ++    P 
Sbjct: 260 VTLGDVAKIEMGAERYDYLSRFNGQAASGMSIKLASGANELQTDELVKARIAELAPFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ +
Sbjct: 380 FAVLSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 8/177 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +
Sbjct: 970  RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLV 1026


>gi|320016317|gb|ADV99888.1| multidrug efflux protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 1050

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITIAANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 PGVGDAQLFGSQ-YAMRIWMDPHKLNNYKLTPVDVINAIKIQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPSGLTVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +++  K            + 
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIKKGDHGPKTGFFGWF 515

Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                                   + V    +    ++  +         + +G     V
Sbjct: 516 NNMFEKSTHHYTDSVANILRSTGRYLVIYLAIVIGMAVLFMRLPSSFLPEEDQGVFLAMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L  +    +  +       F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLNHVTDYYLDKEKNVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RKGEQNKVPAIVSRASAAFSKIKDGMVFA 664



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 88/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLTVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPIKK 502



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGMSHQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+E ++     +LT IG S  + +++ +  +  M          +   +S+   L 
Sbjct: 915  ATLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLESVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G++ A   +I
Sbjct: 973  PILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018


>gi|297616939|ref|YP_003702098.1| protein-export membrane protein SecF [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144776|gb|ADI01533.1| protein-export membrane protein SecF [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 284

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/282 (33%), Positives = 156/282 (55%), Gaps = 10/282 (3%)

Query: 545 ARFWGVGISILFSICSICLLFTHGL--NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
            R W   +S+L  I  +  L   G   N GIDF GG  L V   +PV++  VRS L+SL 
Sbjct: 6   HRKWFYLLSLLLIIPGLVSLLWPGRGLNKGIDFTGGSLLRVKFEQPVEVQQVRSVLDSLD 65

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
           +G+ S Q            ++     +      + +  ++ + V    + + E VGP I 
Sbjct: 66  LGESSIQRSGD-------REFFIRTRMLTQEDRDKLVTQLEKRVGKVDVPSEESVGPTIG 118

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           +EL  K ++ ++I+++ ML+YI  RF++ F +GAI  L+ D+   LG F+LF ++ +   
Sbjct: 119 KELTMKAVLSILIASVLMLVYISFRFEFSFGVGAIVALLYDVVLVLGVFSLFRLQVDGAF 178

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           VAA+LT++GYS+ND +VV+DR+R+N+          + I+KSI +TL RS+ T +A    
Sbjct: 179 VAAILTILGYSINDTIVVFDRIRENLGFKKKG-DLAETINKSIMQTLNRSINTVLAVVFV 237

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +L + V+GG  I  F++ +  G++    SSIF+A+PI   + 
Sbjct: 238 LLALLVFGGETIKVFSLALLIGVISGCYSSIFVASPIYYDLK 279



 Score = 39.3 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 46/133 (34%), Gaps = 26/133 (19%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W  +L  ++   GL+  L                P   ++ G+D  GGS  +L V  + 
Sbjct: 8   KWFYLLSLLLIIPGLVSLL---------------WPGRGLNKGIDFTGGS--LLRVKFEQ 50

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQG 121
            V         ++RS L    +G  S+++  ++   I         ++ +  ++   +  
Sbjct: 51  PVE------VQQVRSVLDSLDLGESSIQRSGDREFFIRTRMLTQEDRDKLVTQLEKRVGK 104

Query: 122 VNSKLNVDPKKNL 134
           V+          +
Sbjct: 105 VDVPSEESVGPTI 117


>gi|119716617|ref|YP_923582.1| protein translocase subunit secF [Nocardioides sp. JS614]
 gi|119537278|gb|ABL81895.1| protein translocase subunit secF [Nocardioides sp. JS614]
          Length = 412

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 146/309 (47%), Gaps = 12/309 (3%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                   L     +I F+  ++    IS++  + S+  L   GL+ GI+F GG +  V 
Sbjct: 3   KFSRLGNDLYSGDKSIDFVGRKWLWYAISVVIIVGSLLGLAVKGLDMGIEFVGGAEYKVK 62

Query: 585 --ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
             +        +R+++ +  I               V +Q +P  +    ++   +    
Sbjct: 63  VASADQALADQLRTDVAATGIDAAQQPVVTTSGKDAVLIQVKPLTTAENEQIKNTIADT- 121

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                  T  N   +GP   +E+ ++   G+++  I ++I+IW  F+ W  ++GAI  L 
Sbjct: 122 --TGTDPTQINATEIGPSWGKEIAKRSGTGLVVFLILVVIFIWAYFREWKMSVGAIVALA 179

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK-LYTTSISFRDL 760
            D+  T+G +AL G E     V  +LT++G+S+ D VVV+D++R+N K L  +  ++   
Sbjct: 180 HDVVITVGVYALSGFEVTPATVTGLLTILGFSLYDTVVVFDKVRENTKNLRESRTTYAKA 239

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFI 815
            + ++N+TL RS+ TS+ A I V  +        G S +   A+ +  G+   A SSIFI
Sbjct: 240 ANLAVNQTLVRSINTSVVALIPVGVILYVSAVQLGASTLKDLALALFVGMAAGAYSSIFI 299

Query: 816 AAPILLFIY 824
           A P+++ + 
Sbjct: 300 ATPLVVQLK 308


>gi|119897194|ref|YP_932407.1| preprotein translocase subunit SecF [Azoarcus sp. BH72]
 gi|119669607|emb|CAL93520.1| protein-export membrane protein SecF [Azoarcus sp. BH72]
          Length = 310

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 156/302 (51%), Gaps = 2/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  + ++  L T GL+  ++F GG  + V  +   +
Sbjct: 1   MEFFRIKKDIPFMRHALVFNVISLITFLLAVFFLATRGLHLSVEFTGGTLVEVSYSEAAE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R +L +    D+  Q+F   ++ L+RL  + G          ++        P + 
Sbjct: 61  LEPIRQSLAADGYTDVLVQHFGSTRDVLIRLPNREGADSKGVAER-VMATLEKSAGPKAE 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL   G + +++  + ++IY+ +RF+W   +  I   + D+   LGF
Sbjct: 120 LRRVEFVGPQVGKELASDGAMALLLVVVGIVIYLALRFEWRLGVATIIANLHDVIIILGF 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AA L ++GYSVN+ VVV+DR+R+  +    ++S   ++D +I  T+ 
Sbjct: 180 FAFFQWEFSLAVLAATLAVLGYSVNESVVVFDRVRETFRK-KRNLSTEQVVDHAITSTIS 238

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  + VL M ++GG  +  FA+ +  GI     SS+ +A+P+ +++   R + 
Sbjct: 239 RTMITHGSTQMMVLSMLIFGGETLFYFALALTIGICFGIYSSVLVASPLAIWLGVSREQF 298

Query: 831 AR 832
            +
Sbjct: 299 VK 300


>gi|37527712|ref|NP_931057.1| acriflavin resistance protein B [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36787148|emb|CAE16224.1| acriflavin resistance protein B [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 1049

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 72/692 (10%), Positives = 179/692 (25%), Gaps = 43/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIITMLAGLLAIM-----KLPVAQYPTIAPPAI---------SISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              N  ITL+F      +    +V   LQ 
Sbjct: 54  ATTVQNTVTQVIEQNMNGIDNLVYMSSDSDSAGNMNITLTFEAGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    +       + S  +     D +       
Sbjct: 114 AMPLLPQEVQQQGIRVDKSTTSFLMVAGFISEDGSMSQDDISDYVGATVKDPLSRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    +P +L     TT  +       NN       G            
Sbjct: 174 DTMLFGNQ-YAMRIWLNPDKLVNYKMTTLDVINAIKAQNNQIAAGQLGGTPPVPGQRLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 SIIAQTRLT-------------SPEEFSNILLRVNTDGSQVRLKDVAKVELGAQSYNIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +        +          +           S + 
Sbjct: 280 RYNGKPAAGIGVKLATGANALDTSKAVKEALNNMEPFFPHGLKIVYPYDTTPFVKISINE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++  +V
Sbjct: 340 VVKTLVEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILATFGYSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +  S +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPKEATRKSMGQIQSALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++++S+  A+ +  A+   +           +       +   
Sbjct: 460 GGSTGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGSHGKQTGVFGWFNRIF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D I         + V    L +  ++            + +G +   V    
Sbjct: 520 DKSTHHYTDSIGRILRNTGRYLVIYVFLVAGMAVMFTRLPSSFLPEEDQGVLLTMVQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     L+ +     + +       F V      G           +K        
Sbjct: 580 GATQEQTEKVLDKVSDYFNTEEKDRVVSVFTVSGFGFSGQGQNTGLGFISLKDWGERPGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            + +           + +    +    I AI 
Sbjct: 640 ENKVPAIVARASAHFQTIKEGMVFAFNIPAIV 671



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q  +I  +        +        +++  ++ ++     +    
Sbjct: 258 SQVRLKDVAKVELGAQSYNIIARYNGKPAAGIGVKLATGANALDTSKAVKEALNNMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PHGLKIVYPYDTTPFVKISINEVVKTLVEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFAILATFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  +M      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 436 GQIQSALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 7/201 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            + +         L      +  G      L       +  +S I + + +   ++ W   
Sbjct: 841  DAMALMEELASKLPNGIGFDWTGMSYQERLSGNQAPALYALSLIVVFLCLAALYESWSIP 900

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L I   L      G++ ++     +LT IG S  + +++ +  +  M+    
Sbjct: 901  FSVMLVVPLGIVGALLATTFRGLDNDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 960

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + V+P+ +    G     +    +  G++ A S
Sbjct: 961  G--LIEATLDAVRMRLRPILMTSLAFMLGVIPLVLSNGAGSGSQNAVGTGVLGGMIAATS 1018

Query: 811  SSIFIAAPILLFIYDWRAKNA 831
             +IF      + I    +K A
Sbjct: 1019 LAIFFVPVFFVVIRRRFSKKA 1039


>gi|148652748|ref|YP_001279841.1| preprotein translocase subunit SecD [Psychrobacter sp. PRwf-1]
 gi|148571832|gb|ABQ93891.1| protein-export membrane protein SecD [Psychrobacter sp. PRwf-1]
          Length = 625

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 152/522 (29%), Positives = 261/522 (50%), Gaps = 41/522 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG   VLEVD +  +   L+  S+++RS L+ E +
Sbjct: 103 NLAQTTPEWLRSIGAKPLKLGLDLRGGVRFVLEVDMNKALEQRLKTTSNDVRSSLRAERV 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +  ++  + L F D   ++     +                   L+      + + 
Sbjct: 163 AAKGINVVEQGLVLHFKDVDLRDKAQRIIQ-------RDHGAQFDMQALMDDQGPALRLN 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++  +A+ Q++  +R RI ++G+SE+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 216 YNEATLKEINEYAVGQNLTTLRNRIAELGVSEALVQSQGSNRIVVELPGVQDTAEAKRVL 275

Query: 207 GTTAKMSFHKVLPNNSK-----KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V   N+                   DG   L+  +  ++G  +     + 
Sbjct: 276 GRTANLEFRLVADENTTYAGGIPPAGTEAFPYMTLDGPPSLLNRQPILTGEKV-QGATSG 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296
             +   P V+I+ D  G +     T+  +GK +                           
Sbjct: 335 LDENGAPEVNITLDTAGGKLMQNATKSAVGKQMAVLFIENKQKIAYSKDPNTGETIETRT 394

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +    QA+     +I+G  +   A  LA +LR+G+L   +  VEER +G  L
Sbjct: 395 PYAETKIISQANIQAVLGSSFRITGLNSNAEAAELALLLRSGALAAPMYFVEERTIGPSL 454

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G  +I  G  +   G +L+ LFMI+ Y  +G++A+ ++  N+I+ +A+LS+LGA+LTLP 
Sbjct: 455 GQQNIDDGLFSTKIGYLLVFLFMILFYRLFGVIANIALAFNLIIMIAVLSILGASLTLPG 514

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL IG+AVD+N+L+ ERIREE  +      ++  GF RA+S+IFD NIT L+  ++
Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREEIAEGVRPKSAIVAGFDRAFSSIFDGNITTLLVAII 574

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           LF  G G ++GFAIT+ + IL S+FTAI + RA++  I   +
Sbjct: 575 LFSIGSGPIKGFAITLAIGILSSLFTAIIVTRALVHLIYGNR 616



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 78/185 (42%), Gaps = 4/185 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                   +GP + ++ I  G+    I  + + +++ + ++  F + A   L  ++   +
Sbjct: 442 MYFVEERTIGPSLGQQNIDDGLFSTKIGYLLVFLFMILFYRL-FGVIANIALAFNLIIMI 500

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++ G    L  +A ++  IG +V+  V++++R+R+ +         +  I    +  
Sbjct: 501 AVLSILGASLTLPGIAGIVLTIGMAVDANVLIFERIREEIAEGVR---PKSAIVAGFDRA 557

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                  ++   +  + +   G   I  FAI +A GI+ +  ++I +   ++  IY  R 
Sbjct: 558 FSSIFDGNITTLLVAIILFSIGSGPIKGFAITLAIGILSSLFTAIIVTRALVHLIYGNRK 617

Query: 829 KNARI 833
              ++
Sbjct: 618 SVDKL 622



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 27/119 (22%), Gaps = 25/119 (21%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M    W   L   +  I  L ALPN  P                             ++V
Sbjct: 1   MHYPAWKYFLIVTVLVIAGLYALPNLYPDEPA-------------------------VQV 35

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                     +    +    L + GI         N   L   +   +    + +   L
Sbjct: 36  TSASAGTELTEEVLTQSTQLLDEAGIAYHDPTFSGNSALLRVENGAEQRKAQEVLRQQL 94


>gi|123443310|ref|YP_001007284.1| multidrug efflux protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090271|emb|CAL13137.1| multidrug efflux protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 1050

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGSLAIM-----KLPVAQYPTIAPPA-------------ISISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMKQEDIADYVGSNVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNYGLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQIMLKVNTDGSQVRLKDVAIVQLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + V    +     +  L         + +G     V
Sbjct: 516 NRMFEKSTHHYTDSVGNILRSTGRYLVIYLAIVIGMGVLFLRLPTSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +    +  +       F V      G           +K    
Sbjct: 576 QMPAGATQERTQKVLDQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RPGEQNKVPAIVARASAAFSQIKDGLVFA 664



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVQLGAENYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMDLMQELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + VLP+ +    G     +    +  G++ A  
Sbjct: 958  G--LVESTLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|87199241|ref|YP_496498.1| hydrophobe/amphiphile efflux-1 HAE1 [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134922|gb|ABD25664.1| Hydrophobe/amphiphile efflux-1 HAE1 [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 1044

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 81/684 (11%), Positives = 191/684 (27%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL            ++++P   P              +      +
Sbjct: 9   RPIFAWVLAIVIMAAGLFAV-----STMGVEQYPDIAPPTV---------SINATYGGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    L        +     ++IT++F      +    +V   +   
Sbjct: 55  ASTVENSVTQVLEQQLKGLDGLLYFNSNSSNGSSQITVTFDKGTDPDTAQVQVQNAISRA 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    ++  +     +   +++         +   + S  +     D I   E    
Sbjct: 115 VSRLPAVVQQQGVNVNKSQSDMLMVVSIYDKTGRTTNADISDYLSTHFQDPISRVEGVGN 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP RL  +    + +       N        G     D       
Sbjct: 175 AQIFGA-SYAMRIWLDPLRLAAVQLMPSDVVTALQAQNTQVAAGEIGANPAPDGQRLNAT 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V  +  +                 +    +   ++            +            
Sbjct: 234 VTARSRL-------------QTPEEFENIVVKTQVDGSVVRLRDVARVEMGEESYGSISR 280

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      S  +  +   T +      A L               +      S    
Sbjct: 281 FNGMPATGLSVSLASGANAMKTAQLVKDTVAELSKDLPAGYEVAYPRDSSTFVKLSIEEV 340

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +      LV+IV+F+ +   +  L+   ++ + ++ T  +LSL G T+   ++ G+VL
Sbjct: 341 VWSLGEAIVLVVIVMFVFLQSWRATLIPAIAVPVVLLGTFGVLSLAGYTINTLTMFGMVL 400

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IGL VD  I+V E +    + +  S   +         S +    +      V + FFG
Sbjct: 401 AIGLLVDDAIVVVENVERVMHEEGLSPLDATVKSMDEITSALIGITLVLTAVFVPMAFFG 460

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529
           G      R F++T+  ++ +S+  A+    A+   +++          +  +  +    +
Sbjct: 461 GSTGAIYRQFSVTIVSAMTLSVLVALVFTPALCATLLKPVAEHEKPGGRFFRRFNDGYAN 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +A    R   W +  + +     +  +         + +G + +        
Sbjct: 521 LEGRYRTRLARVVGRPLPWMMVFAGITLGMVLLYVRLPTSFLPAEDQGNLSISYQLPVGS 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                R+    L     + +  D +  F+V  + Q G +    +   ++K          
Sbjct: 581 TSEQTRAVANQLSDYIRTSEKEDVKAVFVVMGRGQAGSAQNAGQGFILLKDWSERSGKEH 640

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
           +            R+     I  +
Sbjct: 641 SAAAIAERLNAYFRKSRDAQIFVL 664



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +      +        L        +++   ++++    ++++ +P 
Sbjct: 260 VRLRDVARVEMGEESYGSISRFNGMPATGLSVSLASGANAMKTAQLVKDTVAELSKDLPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                         +  I + +  +  + + ++I +++    W   L     + + +  T
Sbjct: 320 GYEVAYPRDSSTFVKLSIEEVVWSLGEAIVLVVIVMFVFLQSWRATLIPAIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  +L G   N   +  ++  IG  V+D +VV + +     ++   +S  D   KS++E
Sbjct: 380 FGVLSLAGYTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMHEEGLSPLDATVKSMDE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  ++      +PMA +GGS       F++ +   + ++   ++     +   + 
Sbjct: 438 ITSALIGITLVLTAVFVPMAFFGGSTGAIYRQFSVTIVSAMTLSVLVALVFTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 79/267 (29%), Gaps = 13/267 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                     G   +     +    S   S+  +     +   N    +            
Sbjct: 775  PYRNEPSDLGQWFVRSNGGQMAPFSAFASSHWTQGPVRLDRFNGVPAQQLQGSGAPGVSS 834

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + +   K         +  + +         L+         S   + + +   
Sbjct: 835  GDAMKIMEDNAAKLDGNFSVAWSGLSYQERAASSQSLLLYTA------SIFFIFLCLAAL 888

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W   +  +  + L I   +    L G   ++    A+LT IG S  + +++ +   +
Sbjct: 889  YESWSVPVAVLLVIPLGIIGAVLAVTLRGYNNDIYFQVALLTTIGLSAKNAILIVE-FAE 947

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                    +       +     L   + TS+A    V+P+A+    G +   +    +  
Sbjct: 948  --AALARGVEPVAAALEGARLRLRPIIMTSVAFIAGVIPLAIADGAGANGRRAIGTGVMG 1005

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKN 830
            G++ A   +IF+     + +  W  + 
Sbjct: 1006 GMLSATILAIFLVPLFFVLVKGWFRRK 1032


>gi|148245036|ref|YP_001219730.1| preprotein translocase SecD subunit [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326863|dbj|BAF62006.1| preprotein translocase SecD subunit [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 615

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 177/519 (34%), Positives = 291/519 (56%), Gaps = 36/519 (6%)

Query: 32  LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
           +  + +++    +SLGLDLRGG H +LEVD    ++  +    +ELR  L+K+ +   S+
Sbjct: 108 VPVWLASLGGKAMSLGLDLRGGVHFLLEVDMKAVISASMDTAYNELRVLLRKDRL-YKSI 166

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +Q  N I + F  S  K+  +  +   L              LL  T +  ++I +S++ 
Sbjct: 167 KQKGNSIVIHFKRSELKDEASQLIKSELS----------DLVLLSNTDDLLLNIGISESV 216

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
             Q    A++Q++  +R R++++G++E  IQ+ G  RI++QLPG QD +R +++LG  A 
Sbjct: 217 QKQAKKSALKQNITTLRNRVNELGVAEPIIQQQGLERIVVQLPGVQDTARAKEILGAVAT 276

Query: 212 MSFHKVLPNN------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           + F  V   N             G +     DG   L++  V  +G ++ GAT+    + 
Sbjct: 277 LEFRLVDEKNDPQIAIQSGRLPIGSKLYYFKDGRPLLLKSHVITTGENITGATSGVHQEN 336

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLTAP 306
           + P+V+I+ D  G R  F  T+  +   +                         R +   
Sbjct: 337 NTPMVNITLDSAGGRAMFNTTKKYLHHRMAVVFIENKVETIVKNGKTIKKRTTTRDIINA 396

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              + I S + Q++G   I+ A  LA +LRAGSL   + I+EER +G  LGSD+I KG  
Sbjct: 397 ATIKGIFSSRFQVTGIDNIKEARNLALLLRAGSLSAPIEIIEERTIGPSLGSDNITKGVI 456

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +I+ G +L++LFM + Y  +G+VA+ ++ LN+++ L++LSLL ATLTLP IAGIVL +G+
Sbjct: 457 SILVGFILVLLFMAMRYQLFGMVANVALTLNLVMILSILSLLQATLTLPGIAGIVLTVGM 516

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+N+L+ ERI+EE   N+++  ++ +G+ +A  TI D+NIT LIA ++LF FG G ++
Sbjct: 517 AVDANVLIFERIKEEMVINRNLPKAISVGYDKALLTILDANITTLIAALILFSFGTGVIK 576

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GFAIT+ + I+ SMFTAI + RA++  I   KK++ I I
Sbjct: 577 GFAITLSIGIITSMFTAIIVSRAIINKIYSGKKLEEISI 615



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 104/261 (39%), Gaps = 4/261 (1%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             N    +       V     V+  V        +       N    K          G 
Sbjct: 353 MFNTTKKYLHHRMAVVFIENKVETIVKNGKTIKKRTTTRDIINAATIKGIFSSRFQVTGI 412

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  +   +     I     +GP +  + I KG++ +++  I +L+++ +R
Sbjct: 413 DNIKEARNLALLLRAGSLSAPIEIIEERTIGPSLGSDNITKGVISILVGFILVLLFMAMR 472

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F + A   L L++   L   +L      L  +A ++  +G +V+  V++++R+++ 
Sbjct: 473 YQL-FGMVANVALTLNLVMILSILSLLQATLTLPGIAGIVLTVGMAVDANVLIFERIKEE 531

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M +     +    I    ++ L   +  ++   I+ L +  +G  VI  FAI ++ GI+ 
Sbjct: 532 MVINR---NLPKAISVGYDKALLTILDANITTLIAALILFSFGTGVIKGFAITLSIGIIT 588

Query: 808 AASSSIFIAAPILLFIYDWRA 828
           +  ++I ++  I+  IY  + 
Sbjct: 589 SMFTAIIVSRAIINKIYSGKK 609


>gi|115376253|ref|ZP_01463494.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Stigmatella aurantiaca DW4/3-1]
 gi|310823975|ref|YP_003956333.1| rnd multidrug efflux transporter [Stigmatella aurantiaca DW4/3-1]
 gi|115366751|gb|EAU65745.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Stigmatella aurantiaca DW4/3-1]
 gi|309397047|gb|ADO74506.1| RND multidrug efflux transporter [Stigmatella aurantiaca DW4/3-1]
          Length = 1051

 Score =  199 bits (506), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 85/609 (13%), Positives = 171/609 (28%), Gaps = 39/609 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  +I  +G +       P   + ++P                         
Sbjct: 8   RRPVFATVLSIIIVLVGAISI-----PSLPVAQYPDLALPQVT---------VQATYLGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + L+       S      ++ITL+F  SR  +  A  V   + 
Sbjct: 54  SAEVVESAVTTVLERELNGLEGMRYISSSSTNDGTSQITLTFDPSRDVDLAAVDVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             +++L  +     L     +   ++       +        S        D +      
Sbjct: 114 TASARLPAEVNAVGLTINKAQTQLLMTFGLFDPEGRYEREFLSNYADVYIRDALRRVPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DPSRL     T   +       N        G          Q
Sbjct: 174 GDVRIFGERRFAMRLWLDPSRLAARSLTAQDVVTALREQNFQVAAGQVGQPPSPPDQSYQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +S             +  +    I                +           
Sbjct: 234 LSVRVQGRLS-------------EPSEFGNLIIQRGATGELVRLKDVGSAELGAENYGQL 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +     +        L+A   P     +      A   S  
Sbjct: 281 LRFNGRDAVGLGIFQLPDANALDVRDGVVKELDRLKARFPPGMTYELATDTTRAVSASIE 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T A    LV++V+F+ +   +  L+   ++ ++++ T A +SL G +L   ++ G+
Sbjct: 341 EVLHTLAEAIALVVLVVFIFLHGWRSVLIVALTLPVSLVGTFAFVSLFGFSLNTLTLFGL 400

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFD-SNITALIATVVLF 478
            L  GL VD  I+V E +     ++  +   + + G  +  S +   + + + +   V F
Sbjct: 401 TLATGLVVDDAIVVIENVERVMEQERLNAREATERGMRQVASAVVAIALVLSAVFIPVAF 460

Query: 479 FFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS------- 529
           F G      R FA+T+  SI +S   A+++  AM   ++R        +           
Sbjct: 461 FPGTTGAIYRQFALTLAFSIALSALCALTLSPAMCARLLRPSHGTKWRVFRWVDDGVNGL 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           R         +             +L  +  +    T       + +G + + V      
Sbjct: 521 RRGYDWLLRRLLGRLRWVVTGVFVVLVGLTVLLYRVTPTGFIPDEDQGYLIVSVQGPEGT 580

Query: 590 DLSVVRSNL 598
            L   R  L
Sbjct: 581 SLEYTRQIL 589



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 77/194 (39%), Gaps = 8/194 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + L+ +K +    +      +T         E++      + +  + + I++    
Sbjct: 306 DGVVKELDRLKARFPPGMTYELATDTTRAVSASIEEVLHTLAEAIALVVLVVFIFL---H 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    TL + +  T  F +LFG   N   +  +    G  V+D +VV + +    
Sbjct: 363 GWRSVLIVALTLPVSLVGTFAFVSLFGFSLNTLTLFGLTLATGLVVDDAIVVIENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    ++ R+  ++ + +     V  ++      +P+A + G+       FA+ +AF I
Sbjct: 421 VMEQERLNAREATERGMRQVASAVVAIALVLSAVFIPVAFFPGTTGAIYRQFALTLAFSI 480

Query: 806 VVAASSSIFIAAPI 819
            ++A  ++ ++  +
Sbjct: 481 ALSALCALTLSPAM 494



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 70/167 (41%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   +  + + + +  +++ +   +  I  + + I   LGF  L G+  ++     ++ 
Sbjct: 871  LLIFGLGIVFVFLVLAAQYESYALPMVVILAVPVAILGALGFQNLRGLPNDVFCQVGLVM 930

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +   + ++      S  D    +    L   + TS+A  + VLP+ +
Sbjct: 931  LVGLASKNAILIVE-FAEQLR--GEGKSVVDAAVSAAETRLRPILMTSIAFLLGVLPLVL 987

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G S   S    +  G++++   ++     + + +   R +  +
Sbjct: 988  ASGAGASARKSLGTAVFGGMLLSTFINLIFIPVLYVLVETARTRVLK 1034


>gi|302550156|ref|ZP_07302498.1| protein-export membrane protein SecF [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467774|gb|EFL30867.1| protein-export membrane protein SecF [Streptomyces
           viridochromogenes DSM 40736]
          Length = 369

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 148/309 (47%), Gaps = 13/309 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    +   F++ R    G+SIL +I +I  L   GLN GI+F+GG       N    +
Sbjct: 10  RLHRGEVGYDFVKNRKIWYGLSILITITAIVGLTVRGLNMGIEFQGGAVFNTPKNTSASV 69

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S      E+    D   Q         +R+Q    D+ A  ++   +   +      S  
Sbjct: 70  SQAEEYAETASGHDAIVQKLGDG---SLRIQVAGIDTDAANKIKNTLADDLK---IDSEQ 123

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            N E+VGP    ++  K   G+ I  I ++IY+ I F+W  AL A   LI DIT T+G +
Sbjct: 124 INAELVGPSWGEQIANKAWQGLGIFLILVVIYLAIAFEWRMALAAFVALIHDITITVGIY 183

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           AL G E     V  +LT++GYS+ D VVV+D +++  K  T     ++ D+ ++SIN TL
Sbjct: 184 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDITKQTRWTYSDVANRSINSTL 243

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ T++ A + V  +   GG V     +   ++ +  G+   A SSIFIA P++  + 
Sbjct: 244 VRSINTTVVALLPVGGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLK 303

Query: 825 DWRAKNARI 833
           +   +   +
Sbjct: 304 EREPQMKAL 312


>gi|148284576|ref|YP_001248666.1| preprotein translocase subunit SecF [Orientia tsutsugamushi str.
           Boryong]
 gi|146740015|emb|CAM80099.1| protein-export membrane protein secF [Orientia tsutsugamushi str.
           Boryong]
          Length = 320

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 108/300 (36%), Positives = 172/300 (57%), Gaps = 2/300 (0%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           LI   I I F+R R     +SIL  I SI  L    LN    F GGI L V  +    LS
Sbjct: 20  LILSKINIDFIRLRKLNYVVSILLIIFSIASLLIFKLNLSTSFIGGINLEVKISPLQQLS 79

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT-EIVPLSTI 651
            +RS L +  +G +S  NF  E  F +++  +  D+     +   VK  +  ++    T+
Sbjct: 80  SIRSALNNADLGKLSIHNFGAEDVFSIKIANKSQDNNNIGLITNKVKSILETQLNCKVTL 139

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           + T  +GP++SR L++  I  + ++ + + IY+WIRFKW F +G +  ++ D   ++GF 
Sbjct: 140 RKTSFIGPQVSRYLVKSSIKALALALVGIAIYVWIRFKWQFGVGILVAIMHDAILSMGFM 199

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLG 770
           ++ G+EF+L++VAA+LT+IGYSVND V++YDR+R+NM     +S    D+I+ SI  TL 
Sbjct: 200 SISGLEFDLSSVAALLTVIGYSVNDSVIIYDRIRENMNKNNISSKPIEDIINISIRATLS 259

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T     ++ L + ++GG+ I SF+I +  GI+V   SSIF++APIL+       K 
Sbjct: 260 RTILTVFTTLLANLALILFGGAAIKSFSILVFIGIIVGTYSSIFVSAPILMLFNIQHQKK 319


>gi|289665550|ref|ZP_06487131.1| preprotein translocase subunit SecD [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289667766|ref|ZP_06488841.1| preprotein translocase subunit SecD [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 614

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 143/520 (27%), Positives = 252/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  ++VD+   +   L  +++++R+ L+   I
Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I +S  +    +     +               +  L    + + I++
Sbjct: 163 AYRSVERRADNSIQVSLGEGADADAARVALGK------------AQPTLTYDVSGQNIAV 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L
Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N++     G                  L+  +  ++G  +  A+ 
Sbjct: 271 IGATASLEFRAVVDGNAEDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
           + D      V     +  G R F                    T   +       +  + 
Sbjct: 331 STDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P    A   GK   +       A  LA +L++GSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALPATRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610



 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +        G  + V+    +    +    E   +              +    +Q  
Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALPATRIAGVFGKNFQTT 409

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         K   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F       L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++L    +  +  I     +  G  +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 529 ELRL---GVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I ++  + + IY  R K   +
Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612



 Score = 41.6 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 30/121 (24%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +    W   L  ++  +  L ALPN   +                          +    
Sbjct: 2   LEFPRWKYFLILLVLAVSALYALPNIYQKDPS---------------------VQITASR 40

Query: 60  -VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
               DD +   +        + LK  GI   ++ +  + + +     + +    D +   
Sbjct: 41  GAQLDDALRSRID-------ADLKAAGITPKAVTKEGDSLMVRLPSLQAQTRANDVLRQQ 93

Query: 119 L 119
           L
Sbjct: 94  L 94


>gi|118462611|ref|YP_882649.1| preprotein translocase subunit SecF [Mycobacterium avium 104]
 gi|118163898|gb|ABK64795.1| protein export protein SecF [Mycobacterium avium 104]
          Length = 435

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 132/318 (41%), Gaps = 15/318 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     A + +  R    GIS      +I  +   G  +GIDF GG  + + A
Sbjct: 38  RHSFLSRLYTGTGAFEVVGRRRLWFGISGAIVAVAILSIALRGFTFGIDFNGGTTVSMPA 97

Query: 586 ---NRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEM 637
              +  V  + V+         D       G                   +  +  + + 
Sbjct: 98  AGTHGTVHTAQVQEVFRKTLGTDPESVVVVGNGAAATVQIRSETLTNDQTTKLRNALFDA 157

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K  +  P     +   V      ++  K ++ +++    + +YI +R++ Y  L AI
Sbjct: 158 FGPKGADGKPSKQAISDSAVSETWGDQITDKALIALVVFLALVGLYITVRYERYMTLAAI 217

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSI 755
             +  D+T T G ++L G E     V  +LT++G+S+ D V+V+D++ +N +   +T   
Sbjct: 218 AAMFFDLTVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTRDFQHTNRR 277

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAAS 810
           +F +  + +IN+T  RS+ TS+   + VL +      + G   +   A+    GI+V   
Sbjct: 278 TFAEQANLAINQTFMRSINTSLIGVLPVLALMVVAVWLLGVGTLKDLALVQLVGILVGTY 337

Query: 811 SSIFIAAPILLFIYDWRA 828
           SSIF+A P+L+ + +   
Sbjct: 338 SSIFVATPLLVTLRERTE 355


>gi|325123144|gb|ADY82667.1| hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1
           family [Acinetobacter calcoaceticus PHEA-2]
          Length = 1037

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/693 (11%), Positives = 205/693 (29%), Gaps = 49/693 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I  +G +  L        ++++P   P            G ++    + 
Sbjct: 9   RPIFAWVLSICIMALGTISIL-----TLPIEQYPDIAPP-----------GVNVT--ANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   +K           S    Q +I+LSF  +   +    +V  
Sbjct: 51  PGASAKTVEDSVTQILEQQIKGIDGLLYFSSSSSSAGQARISLSFDQNTNPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  + ++  +  T  +  S+++     +     +++ S  ++    D +   
Sbjct: 111 AVNQALSRLPQEVQQQGITVTKSQGDSLLVFALYDESGTRSSVDISDYMVSTLQDPLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L       + +       N        G    RD  
Sbjct: 171 DGVGEITVFGAQ-YAMRIWLDPHKLNSYGLMPSDVRTAIEAQNTQITAGELGALPTRDGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     +                 +    I   +             + +     
Sbjct: 230 ALNATVTALSRL-------------QTVSQFENIILRTQTNGAVVLLKDVARVERGAESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +       +  +   T E        L A             +      
Sbjct: 277 QTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T A    LV+IV+F+ +   +  L+   ++ + ++ T  +LS+LG ++   ++
Sbjct: 337 SVNGVIKTLAEAIVLVIIVMFLFLQSWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     +       +  +        +    +      + 
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMHEQNLDARQATLISMQEISGALVGIAMVLAAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  ++++S   A+++  A+   +++    K       + F  
Sbjct: 457 MAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLLKPANEKHKQRKFFTWFNY 516

Query: 534 IPDCIAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +     +         + + + V    + ++        +      + +G + +    
Sbjct: 517 KVEQGQTGYRTKLVAVLGKPKVFMVIFVGITALLGWQYTRMNTGFLPQEDQGSVMVQFST 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                L+        +    ++ +  +    F+V  +   G           +K      
Sbjct: 577 PVGTTLAETERVGNQIADYFLTKEKNNLNVIFMVMGRNNAGSGQNVGMAFAGLKHWDDRE 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +T +          + L    +  +  +A+
Sbjct: 637 GSENTAEAVIARANAYFKSLRNARVQVLSPAAV 669



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 84/210 (40%), Gaps = 8/210 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +      +  +   +   + ++  +++          +I+     +++  I M +++ 
Sbjct: 302 ETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEASVNGVIKTLAEAIVLVIIVMFLFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L     + + +  T G  ++ G   N   + A++  IG  V+D +VV + + 
Sbjct: 362 ---SWRATLIPAIAVPVVLLGTFGVLSVLGYSINTLTLFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               ++  ++  R     S+ E  G  V  +M      LPMA +GGSV      F++ + 
Sbjct: 418 -ERVMHEQNLDARQATLISMQEISGALVGIAMVLAAVFLPMAFFGGSVGIIYRQFSVTLV 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +V++A  ++ ++  +   +     +  +
Sbjct: 477 SAMVLSAIVALTLSPALCATLLKPANEKHK 506



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 8/212 (3%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIISAIAML 681
             Q   S A          K+ E+V      N +  G     +L   + I   + S I + 
Sbjct: 822  VQIQGSAAAGESSGGAMDKMQELVDQQQGFNLQWSGLSYQEKLAGGQTIWLYLASIIFIF 881

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +   ++ W   +  +  + L +   +   +L G   ++    A+LT IG S  + +++
Sbjct: 882  LCLAALYESWSIPVSVMLVIPLGLIGAVVAASLAGFVNDIYFQVAMLTTIGLSAKNAILI 941

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
             +             +  D I +   + L   + TS+A    VLP+AV    G       
Sbjct: 942  VEFA---AAKLEAGQALMDAIIEGAGQRLRPIIMTSLAFVAGVLPLAVSTGAGAVSRKEI 998

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             I +  G++     SIF      L +     K
Sbjct: 999  GIAVTGGMISGTLLSIFFVPLFFLLVRRLTNK 1030


>gi|146283378|ref|YP_001173531.1| preprotein translocase subunit SecF [Pseudomonas stutzeri A1501]
 gi|145571583|gb|ABP80689.1| protein-export membrane protein SecF [Pseudomonas stutzeri A1501]
          Length = 303

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 89/292 (30%), Positives = 156/292 (53%), Gaps = 5/292 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM  R     +++L ++ S+  L   GLN+G+DF GG  + +   RPV+L  VR
Sbjct: 1   MKRVINFMGVRHVAFALTVLLTVASLGSLVVKGLNFGLDFTGGTLIELGYERPVELEQVR 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L      D   Q+F    + LVR+         Q         +  +     +++  E
Sbjct: 61  GQLVQAGFTDAVVQSFGATTDVLVRMP----GDDPQLGERIASALRNADGGNAVSVKRVE 116

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  EL  +G +G++++   +L+Y+  RF+W F  GA+ +L  D+   LG F+ F 
Sbjct: 117 FVGPAVGEELRDQGGLGMLLALGGILVYVAFRFQWKFGFGAVLSLFHDVIVVLGVFSFFQ 176

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I F+LT +AAVL +IGYS+ND +V++DR+R+N +         + I+ S  +TL R++ T
Sbjct: 177 ISFDLTVLAAVLAVIGYSLNDTIVIFDRIRENFR-MLRKAELLENINISTTQTLLRTMAT 235

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           S++  ++V  + V+GG  +  F++ +  G+ V   SS+++A  +L+++   R
Sbjct: 236 SVSTLLAVGALMVFGGENLWGFSLALLIGVGVGTYSSVYVAGTLLVWLKLTR 287


>gi|229588909|ref|YP_002871028.1| acriflavine resistance protein B [Pseudomonas fluorescens SBW25]
 gi|229360775|emb|CAY47633.1| acriflavine resistance protein B [Pseudomonas fluorescens SBW25]
          Length = 1053

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 70/694 (10%), Positives = 188/694 (27%), Gaps = 46/694 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++P+  P       +D      +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPAIAPTA-----ID----IQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVASDSNSDGSMTITATFNQGTNPDIAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + S  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKSVKNFLMVIGLVSEDGSMTKDDLSNYIVSNIQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +S      N        G       +    
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVSTAISAQNVQVATGQLGGLPALPGNQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        I           
Sbjct: 233 TIIGKTRL-------------QTAEQFGNILMKVNADGSQVRLHDIARIELGGQNYSISA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T +      A L     P    +V          S S 
Sbjct: 280 QFNGNPASGMAIKLASGANALDTAKAIRATVASLEPFFPPGMKAVVPYDTTPVVTESISG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   ++ + ++ T  +L+  G T+   ++ G++
Sbjct: 340 VVHTLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMI 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     +   S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEHLSPKEATVKSMGQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      + F+IT+  ++ +S+  A+    A+   +            +       +  
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKPIDPEKHGQPKRGFFGWFNRT 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +           +  +++F+      +         + +G I   V   
Sbjct: 520 FDRGVLSYERGVGNMIKHKIPAFLVYALIFAGMIWLFMRIPAAFLPDEDQGVIFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIG--DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                   +  ++ ++    +         K           +   + +   +    +  
Sbjct: 580 VGSSAERTQKVIDDMRSYLLNDKEGEPGEGKGVKSVFTVNGFNFAGRGQSSGLAFVMLKP 639

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                   +   +  +     ++     ++ + +
Sbjct: 640 WDERDASTSVFEIAKRAQGYFMQTFQDAMVFAIV 673



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  +       Q   IS Q      + +        +++   + +      +    
Sbjct: 258 SQVRLHDIARIELGGQNYSISAQFNGNPASGMAIKLASGANALDTAKAIRATVASLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  ++ + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKAVVPYDTTPVVTESISGVVHTLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMILAIGLLVDDAIVVVENV--ERVMAEEHLSPKEATVKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPAL 492



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 90/270 (33%), Gaps = 16/270 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   + + V LS + S         +S  N       L           
Sbjct: 785  RMSPEDLNKWYVRSDSGKMVPLSAIASGKWIFGSPKLSRYNGVAAMEILGTPAPGYSTGD 844

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + K+    I    T  + E              +  +  S + + + +   ++
Sbjct: 845  AMAEVERIAKQLPAGIGYAWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 898

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +  + L +   L   ++ G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 899  SWSIPIAVVLVVPLGVVGALIATSMRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+       +   ++    L   + TSMA  + VLP+A+    G     +    +  G+
Sbjct: 957  -LHEQGKGIVEAAIEASRMRLRPIIMTSMAFILGVLPLAISSGAGSGSQHAIGTGVIGGM 1015

Query: 806  VVAASSSIFIAA---PILLFIYDWRAKNAR 832
            + A   +IF        +  I D + K  +
Sbjct: 1016 ITATVLAIFWVPLFFATVSAIGDRKPKETK 1045


>gi|189183339|ref|YP_001937124.1| preprotein translocase subunit SecF [Orientia tsutsugamushi str.
           Ikeda]
 gi|189180110|dbj|BAG39890.1| protein-export membrane protein SecF [Orientia tsutsugamushi str.
           Ikeda]
          Length = 308

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 169/295 (57%), Gaps = 2/295 (0%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I F+R R     +SIL  I SI  L    LN    F GGI L +  +    L  +RS L
Sbjct: 14  NIDFVRLRKLNYIVSILLVIFSIASLLIFKLNLSTSFIGGINLEIKISPLQQLGSIRSAL 73

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT-EIVPLSTIQNTEIV 657
            +  +G +S  NF  E  F +++  +  D+ +   +   VK  +  ++    T++ T  +
Sbjct: 74  NNADLGKLSIHNFGAEDVFSIKIANKSQDNNSIGLITNKVKSILETQLNCKVTLRKTSFI 133

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++S  L++  I  + ++ + + IY+WIRFKW F +G +  ++ D   +LGF ++ G+E
Sbjct: 134 GPQVSSYLVKSSIKALALALVGIAIYVWIRFKWQFGVGILVAIMHDAILSLGFMSISGLE 193

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTS 776
           F+L++VAA+LT+IGYSVND V++YDR+R+NM     +S    D+I+ SI+ TL R++ T 
Sbjct: 194 FDLSSVAALLTVIGYSVNDSVIIYDRIRENMNKNNSSSKPIEDIINISISATLSRTILTV 253

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               ++ L + ++GG+ I SF+I +  GI+V   SSIF++APIL+       K  
Sbjct: 254 FTTLLANLALILFGGAAIKSFSILVFIGIIVGTYSSIFVSAPILMLFNIQHQKKR 308


>gi|78356862|ref|YP_388311.1| preprotein translocase subunit SecF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219267|gb|ABB38616.1| protein translocase subunit secF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 356

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 99/340 (29%), Positives = 163/340 (47%), Gaps = 49/340 (14%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVDL 591
           +I   I I F+  R   + +S +  +  +  LF  G  +YGIDF GG+ + V  +R V+ 
Sbjct: 5   IIKPDINIDFVGLRKISLCLSGVVLLVGLLSLFIKGGPSYGIDFAGGVVVQVQFDRSVEP 64

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLST 650
           + ++S+LE L +  +S Q F    +    ++        +    ++ +    +       
Sbjct: 65  AAIKSSLEDLNLPGLSVQRFGDSADNEYLVRVSQAGENPEDLRSDIAQAFTGKLPGASYE 124

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--------------------- 689
           I+  E+VGPK+  +L  K +  +  + + + IYI  RF+                     
Sbjct: 125 IKRLEMVGPKVGADLRSKAVEALYFAVLLIAIYISGRFEQRWFTAGIMAAALATGMYLLG 184

Query: 690 -------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                                      FALGA+  LI D+T T+G F+L   EF+LT VA
Sbjct: 185 QLGISKAGLVFAALLLTLALCWKLKLNFALGALVALIHDVTITVGLFSLLDKEFDLTIVA 244

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT+IGYS+ND ++VYDR+R+    +    S   +I+ +IN+TL R++ TS    + ++
Sbjct: 245 ALLTIIGYSLNDTIIVYDRIREYRLSHQN-ESLGSVINLAINQTLSRTILTSGTTLLVII 303

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +   GG VI  FA+ M  G+ V   SSIF+A+PILL + 
Sbjct: 304 TLYFLGGGVIHDFALAMLIGVGVGTYSSIFVASPILLMLG 343


>gi|303232862|ref|ZP_07319546.1| export membrane protein SecF [Atopobium vaginae PB189-T1-4]
 gi|302481052|gb|EFL44128.1| export membrane protein SecF [Atopobium vaginae PB189-T1-4]
          Length = 365

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 138/304 (45%), Gaps = 5/304 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                   +QF+  R   +GIS +  I ++  L   GL +GI+F+GG  +       V +
Sbjct: 1   MRSHFKRELQFIPHRRVFLGISCILVILAVIGLVVRGLVFGIEFQGGTTIDFHNTGEVTI 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +RS L +    D   Q    E      ++ +  D            + +         
Sbjct: 61  DQMRSALSAAGETDPVVQTTQSESGSGFLVRSETTDPNVANDHAAKAGQSLGLPDKSY-- 118

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +GP   +++ R       I+ + ++ Y+ +R+++  ++ A+  L+ D+  TLG +
Sbjct: 119 -TVTTIGPDWGQDITRASAFAFGIAIVLIIAYVSLRYEFKMSITAVLALMHDLVITLGIY 177

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINETL 769
           A   +      VAA+LT++GYS+ D VV ++RM +N K       +++  + + SINE +
Sbjct: 178 AWAQVAITPNVVAALLTIMGYSLYDTVVEFNRMDENAKHLHDGVHVTYYQICNFSINEVI 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T++ + + V  M + GG  +  FA+ M  G ++   SS  +A+P+L         
Sbjct: 238 VRTINTTITSVVPVCIMLILGGETLKDFALAMLIGELLGTWSSFGVASPLLAMWKTREKH 297

Query: 830 NARI 833
            A++
Sbjct: 298 WAKL 301


>gi|293609911|ref|ZP_06692213.1| hypothetical protein HMPREF0013_02062 [Acinetobacter sp. SH024]
 gi|292828363|gb|EFF86726.1| hypothetical protein HMPREF0013_02062 [Acinetobacter sp. SH024]
          Length = 1037

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/693 (11%), Positives = 206/693 (29%), Gaps = 49/693 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I  +G +  L        ++++P   P            G ++    + 
Sbjct: 9   RPIFAWVLSICIMALGTISIL-----TLPIEQYPDIAPP-----------GVNVT--ANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   +K           S    Q +I+LSF  +   +    +V  
Sbjct: 51  PGASAKTVEDSVTQILEQQIKGIDGLLYFSSSSSSAGQARISLSFDQNTNPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  + ++  +  T  +  S+++     +     +++ S  ++    D +   
Sbjct: 111 AVNQALSRLPQEVQQQGITVTKSQGDSLLVFALYDESGTRSSVDISDYMVSTLQDPLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L       + +       N        G    RD  
Sbjct: 171 DGVGEITVFGAQ-YAMRIWLDPHKLNSYGLMPSDVRTAIEAQNTQITAGELGALPTRDGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     +                 +    I   +             + +     
Sbjct: 230 ALNATVTALSRL-------------QTVSQFENIILRTQTNGAVVLLKDVARVERGAESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +       +  +   T E        L A             +      
Sbjct: 277 QTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T A    LV+IV+F+ +   +  L+   ++ + ++ T  +LS+LG  +   ++
Sbjct: 337 SVNGVIKTLAEAIVLVIIVMFLFLQSWRATLIPAIAVPVVLLGTFGVLSVLGYNINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +N     +  +        +    +      + 
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMHEQNVDARQATLISMQEISGALVGIAMVLAAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  ++++S   A+++  A+   +++    K       + F  
Sbjct: 457 MAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLLKPANEKHKQRKFFTWFNR 516

Query: 534 IPDCIAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +     +         + + + +    + ++        +      + +G + +    
Sbjct: 517 KVEQGQSGYRTKLVAVLGKPKVFMIIFVGITALLGWQYTRMNTGFLPQEDQGSVMVQFST 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                L+        +    ++ +  +    F+V  +   G           +K      
Sbjct: 577 PVGTTLAETERVGNQIADYFLTKEKNNLNVIFMVMGRNNAGSGQNVGMAFAGLKHWDDRE 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +T +          + L    +  +  +A+
Sbjct: 637 GSENTAEAVIARANAHFKSLRNARVQVLSPAAV 669



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 84/210 (40%), Gaps = 8/210 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +      +  +   +   + ++  +++          +I+     +++  I M +++ 
Sbjct: 302 ETAERVKAEVTRLTASMPAGLKVAYPRDSTPFVEASVNGVIKTLAEAIVLVIIVMFLFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L     + + +  T G  ++ G   N   + A++  IG  V+D +VV + + 
Sbjct: 362 ---SWRATLIPAIAVPVVLLGTFGVLSVLGYNINTLTLFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               ++  ++  R     S+ E  G  V  +M      LPMA +GGSV      F++ + 
Sbjct: 418 -ERVMHEQNVDARQATLISMQEISGALVGIAMVLAAVFLPMAFFGGSVGIIYRQFSVTLV 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +V++A  ++ ++  +   +     +  +
Sbjct: 477 SAMVLSAIVALTLSPALCATLLKPANEKHK 506



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 8/212 (3%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIISAIAML 681
             Q   S A          K+ ++V      N +  G     +L   + I   + S I + 
Sbjct: 822  VQIQGSAAAGESSGGAMDKMQQLVDQQQGFNLQWSGLSYQEKLAGGQTIWLYLASIIFIF 881

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +   ++ W   +  +  + L +   +   +L G   ++    A+LT IG S  + +++
Sbjct: 882  LCLAALYESWSIPVSVMLVIPLGLIGAVVAASLAGFVNDIYFQVAMLTTIGLSAKNAILI 941

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
             +             +  D I +   + L   + TS+A    VLP+AV    G       
Sbjct: 942  VEFA---AAKLEAGQALMDAIIEGAGQRLRPIIMTSLAFVAGVLPLAVSTGAGAVSRKEI 998

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             I +  G++     SIF      L +     K
Sbjct: 999  GIAVTGGMISGTLLSIFFVPLFFLLVRRLTNK 1030


>gi|58616782|ref|YP_195981.1| preprotein translocase subunit SecF [Ehrlichia ruminantium str.
           Gardel]
 gi|58416394|emb|CAI27507.1| Protein-export membrane protein SECF [Ehrlichia ruminantium str.
           Gardel]
          Length = 289

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 100/283 (35%), Positives = 162/283 (57%), Gaps = 3/283 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           I + F + R + +  S L  I S+ L+   G+ +G DF GGI + +  N+ VD+  +   
Sbjct: 7   INVDFFKYRVYAISCSSLLVILSVLLVLFKGICFGTDFAGGIIIELRVNQ-VDIKEINLK 65

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+       S Q+F    N  + ++++   ++ +T  +E +K  + EI+   T    + V
Sbjct: 66  LQERGFVGFSVQSF-NNNNKELMIRFKNEQNLDKTDSIEKIKGILKEILGDVTYLKIDYV 124

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  + I +GI  ++ S + M +Y+WIRF+W FALG I  L+ D+  TLG  +L GIE
Sbjct: 125 GPQVGYKQIFEGIYAILFSLLGMFLYLWIRFQWRFALGGIIALLHDVVLTLGLISLLGIE 184

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNL++ AA+LT+IGYSVND VV+YDR+R+ ++         ++I+ SIN TL R++ TS 
Sbjct: 185 FNLSSTAAILTVIGYSVNDSVVIYDRIRELLRKMLKEK-ITEIINISINATLSRTILTSG 243

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              I+ +P+ +     +   +I + FGI V   SSIFIA   L
Sbjct: 244 TTMIAAIPLMLLCSGTVRDLSIIIFFGIAVGTYSSIFIATTSL 286


>gi|293394991|ref|ZP_06639279.1| RND superfamily drug:proton (H+) antiporter [Serratia odorifera DSM
           4582]
 gi|291422519|gb|EFE95760.1| RND superfamily drug:proton (H+) antiporter [Serratia odorifera DSM
           4582]
          Length = 1044

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/551 (11%), Positives = 154/551 (27%), Gaps = 46/551 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +  + 
Sbjct: 8   RPIFAWVLAIILCLTGALAIF-----SLPVEQYPNLAPP-------------NVRISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +     +   S +     +  +TL+F           +V  
Sbjct: 50  PGASAQTLENTVTQIIEQNMTGLDNMMYMSSQSTNTGRATVTLTFDAGTDPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L    ++  +  +   + ++++             + +  I+    D +   
Sbjct: 110 QLQAAIKRLPQAVQQQGVTVSKSGDTTLMMVAFVSTDGSMDKQDIADYIVSNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     TT  +       N        G     D  
Sbjct: 170 NGVGSMDVYGSQ-YAMRIWLDPNKLNSYQLTTGDVVSAIQSQNAQVAVGQLGGTPSIDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                     ++       
Sbjct: 229 ALNATINAQSQL-------------QTPEQFRQIALRVNQDGSLVTLGDVASVELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +   T E        L           V          
Sbjct: 276 DYLSRYNGMPAAGMNIKLASGANELQTDELVKAKINELSQYFPRGLEAKVAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIQDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSACGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLPPREATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +     +K +          
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATL-----LKPVAKGHHHGKRG 510

Query: 534 IPDCIAIQFMR 544
                   F R
Sbjct: 511 FFGWFNRMFNR 521



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V S     +  D   +        +        + +    +++    ++++  P 
Sbjct: 260 VTLGDVASVELGGENYDYLSRYNGMPAAGMNIKLASGANELQTDELVKAKINELSQYFPR 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKVAYETTPFVKASIQDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               +  G   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ +
Sbjct: 380 FAILSACGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 66/196 (33%), Gaps = 8/196 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
              + +    +  L      E         L       +  IS + + + +   ++ W   
Sbjct: 836  TAMNEMERLVSQLPNGFGLEWTAMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIP 895

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   +    L G+E ++     +LT+IG S  + +++ +   +   L   
Sbjct: 896  FSVMLVVPLGVIGAVAATWLRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNQK 952

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                     ++    L   + TS+A    VLPM +    G     +    +  G++ A  
Sbjct: 953  GQDLTAATLEAARMRLRPILMTSLAFIFGVLPMTISQGAGSGSQHAVGTGVMGGMISATL 1012

Query: 811  SSIFIAAPILLFIYDW 826
             +IF      + +   
Sbjct: 1013 LAIFFVPLFFVLVRRR 1028


>gi|172035330|ref|YP_001801831.1| RND multidrug efflux transporter [Cyanothece sp. ATCC 51142]
 gi|171696784|gb|ACB49765.1| RND multidrug efflux transporter [Cyanothece sp. ATCC 51142]
          Length = 1041

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/561 (14%), Positives = 170/561 (30%), Gaps = 42/561 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +GL+  L        LD+FP   P             + + +E  
Sbjct: 9   KRPVFSSVCALLILLVGLISLL-----NLPLDQFPEITP-------------TRVQVEST 50

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
            +      ++    + L   +        I   S     + IT++F  SR  +  +  V 
Sbjct: 51  YNGASAEVVENAVTNILERQINGVEGLRYISSSSSNSGTSSITVTFDSSRNPDLASVDVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V S+L    ++  +  T +    ++      D      +  S    +  +D +  
Sbjct: 111 NQVSVVQSQLPDAVQRTGVQVTRQSNSLLLGIGLYSDNNRYDNVFLSNYADQYLVDALKR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    DP++L     TT  +       N        G     D 
Sbjct: 171 LDGVGNVRIFGERRYAMRLWLDPNKLASRGLTTQDVVNALSEQNLQVGAGKIGAEPAPDG 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +    ++                 +    +   +      +             
Sbjct: 231 QQFQFDLRAISQL-------------KDPKEFENLLLKTDENGGLVYFKDVGRAELGAQD 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                              +   +     +        L A   P    +V         
Sbjct: 278 YSSFLRFRGQEAVGMGIYQRTGSNALEVAKRVEQEMDRLSAFFPPDLQYVVAFDTTQFIE 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S S    T  +  GLV+IV+ + +   +  L+   +I L +I T A + L   ++   +
Sbjct: 338 ESLSEVVKTLFMAVGLVIIVILIFLQNWRTTLIPALTIPLALIGTFAFIKLFNFSINSLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL--DMGFSRAYSTIFDSNITALIAT 474
           + G+ L  G+ VD  I+V E+I            +         + + I  S +   +  
Sbjct: 398 LFGLTLATGMVVDDAIIVVEQINRYIEDENMSPQAAASKAMGELSSAVIATSLVLMAVFI 457

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V FF G      R FA+T+  SI+IS F A+++  ++   ++   +   +     + F 
Sbjct: 458 PVAFFPGTTGALYRQFALTIAFSIVISTFLALTLTPSLCALLLEKGQ--KLPGFLGTIFN 515

Query: 533 LIPDCIAIQFMRARFWGVGIS 553
                +     + R     +S
Sbjct: 516 QFNHFLDWVKGQYRRSLHTLS 536



 Score = 89.8 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 82/201 (40%), Gaps = 8/201 (3%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            + ++ +       +      +T     +   E+++   + V +  I +LI++     W 
Sbjct: 310 EQEMDRLSAFFPPDLQYVVAFDTTQFIEESLSEVVKTLFMAVGLVIIVILIFLQ---NWR 366

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L    T+ L +  T  F  LF    N   +  +    G  V+D ++V +++  N  + 
Sbjct: 367 TTLIPALTIPLALIGTFAFIKLFNFSINSLTLFGLTLATGMVVDDAIIVVEQI--NRYIE 424

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
             ++S +    K++ E     + TS+      +P+A + G+       FA+ +AF IV++
Sbjct: 425 DENMSPQAAASKAMGELSSAVIATSLVLMAVFIPVAFFPGTTGALYRQFALTIAFSIVIS 484

Query: 809 ASSSIFIAAPILLFIYDWRAK 829
              ++ +   +   + +   K
Sbjct: 485 TFLALTLTPSLCALLLEKGQK 505



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I  + L I   L    L G   ++     ++ LIG +  + +++ +      +L  
Sbjct: 898  PLIIIVAVPLAILGALTAQLLRGFANDVYCQIGLVMLIGLASKNAILIVEFAN---QLRD 954

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +       ++  E L   + T+++  + + P+ V    G     S    +  G++VA+
Sbjct: 955  EGLPLVKAAIEAAQERLRPILMTAVSTLLGIFPLVVATGAGSGSRQSLGTAVFGGMLVAS 1014

Query: 810  SSSIFIAAPILLFIYDWRAK 829
              S+F+   + + I     K
Sbjct: 1015 FLSLFVVPILYIVIKMTTEK 1034


>gi|312959497|ref|ZP_07774014.1| hydrophobic/amphiphilic exporter-1 [Pseudomonas fluorescens WH6]
 gi|311286214|gb|EFQ64778.1| hydrophobic/amphiphilic exporter-1 [Pseudomonas fluorescens WH6]
          Length = 1053

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/694 (10%), Positives = 181/694 (26%), Gaps = 46/694 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++P+  P       +D      +      
Sbjct: 8   RPIFAWVIALVIMLVGTLSIL-----KLPINQYPAIAPTA-----ID----IQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVASDSNSDGSMTITATFNQGTNPDIAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + S  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKSVKNFLMVIGLVSEDGSMTKDDLSNYIVSNIQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +S      N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNYQLTPVDVSTAISAQNVQVATGQLGGLPALPGTQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        I           
Sbjct: 233 TIIGKTRL-------------QTAEEFGKILMKVNADGSQVRLRDISRIELGGQNYSISA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T +      A L     P    +V          S S 
Sbjct: 280 QFNGKPASGMAIKLASGANALDTAKAIRATVASLEPFFPPGMKAVVPYDTTPVVTESISG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   ++ + ++ T  +L+  G T+   ++ G++
Sbjct: 340 VVHTLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMI 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     +   S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEHLSPKEATVKSMGQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      + F+IT+  ++ +S+  A+    A+   +            +       +  
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKPIDPEKHDQPKRGFFGWFNRT 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +               I+F                 + +G I   V   
Sbjct: 520 FDRGVISYERGVGNMIKHKYPAFFVYLIIFVGMIWLFTRIPSAFLPEEDQGVIFAQVQTP 579

Query: 587 RPVDLSVVRSNLES--LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                   +  ++     + +         K           +   + +   +    +  
Sbjct: 580 VGSSAERTQKVIDDMRAFLLNDKEGEPGEGKAVKSVFTVNGFNFAGRGQSSGLAFVMLKP 639

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                  Q+   V  +            ++ + +
Sbjct: 640 WDERDASQSVFEVAKRAQGYFFGAFKDAMVFAIV 673



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  +       Q   IS Q      + +        +++   + +      +    
Sbjct: 258 SQVRLRDISRIELGGQNYSISAQFNGKPASGMAIKLASGANALDTAKAIRATVASLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  ++ + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKAVVPYDTTPVVTESISGVVHTLVEAIVLVFLVMFLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMILAIGLLVDDAIVVVENV--ERVMAEEHLSPKEATVKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 84/249 (33%), Gaps = 13/249 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   + + V LS + S         +S  N       L           
Sbjct: 785  RMSPEDLNKWFVRSDSGKMVPLSAISSGKWIYGSPKLSRYNGVAAMEILGTPAPGYSTGD 844

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  + K+    +    T  + E              +  +  S + + + +   ++
Sbjct: 845  AMAEVERIAKQLPAGVGYAWTGLSYEERLSGSQAP----ALYAL--SLLVVFLCLAALYE 898

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +  + L +   L   +L G+  ++     +L  +G +  + +++ +  ++  
Sbjct: 899  SWSIPIAVVLVVPLGVVGALIATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE-- 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+       +   ++    L   + TSMA  + VLP+A+    G     +    +  G+
Sbjct: 957  -LHEQGKGIVESAIEASRMRLRPIIMTSMAFVLGVLPLAISSGAGSGSQHAIGTGVIGGM 1015

Query: 806  VVAASSSIF 814
            + A   +IF
Sbjct: 1016 ITATVLAIF 1024


>gi|255067980|ref|ZP_05319835.1| protein-export membrane protein SecF [Neisseria sicca ATCC 29256]
 gi|255047757|gb|EET43221.1| protein-export membrane protein SecF [Neisseria sicca ATCC 29256]
          Length = 311

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 165/299 (55%), Gaps = 3/299 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   + VD
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLITKGLNFSVEFTGGTVMEVQYQQGVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++  R  L++L++GD+  Q     K+ ++RL  + G + AQ  +   V + + +  P  T
Sbjct: 61  VNKTREKLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMELLKKEQPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +      +++Y+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIVYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +  +    +   +ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPSMRGHTVPQVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R 
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSRE 297


>gi|268316465|ref|YP_003290184.1| acriflavin resistance protein [Rhodothermus marinus DSM 4252]
 gi|262333999|gb|ACY47796.1| acriflavin resistance protein [Rhodothermus marinus DSM 4252]
          Length = 1029

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/669 (11%), Positives = 194/669 (28%), Gaps = 42/669 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+   +I   G++           +  +P+  P                     
Sbjct: 9   RRPVLAVVFSLVILLFGIVS-----FTYLGVREYPAVDPPIIT---------VATNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  + +          R  ++ IT+ F      E  A+ V   +  
Sbjct: 55  NAEVIETQITEPLEESINGIAGIRSITSVSRDGRSTITVEFELGVDLEQAANDVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D    ++         IV      D    + +E +        +++       
Sbjct: 115 AMANLPPDVDPPIVTKADADAQPIVFLNVKSD--RRNLLELTRIAEELFKERLQTIPGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     +   +       N            +  S     
Sbjct: 173 EVDIWGEKRYAMRIWLDPHKLAAYGLSPLDVRDALQRENVELPAGRIEGGSVELSIRTLS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                      ++   E G R        +            
Sbjct: 233 RLLTPEEF--------------------NNLILKEEGGRLVRLRDVGHAELGPENERTVL 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   +   +   +     +        ++          +          S   
Sbjct: 273 KRDGIPMVGVVLRPQPGANYIAIADEFYRRLEQIKKELPADIELGIGFDVTEYIRDSIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +  GLV++++F+ +   +  ++    I +++I    L+ L G ++ + ++ GIV
Sbjct: 333 VQQTIFLALGLVVLIIFLFLRDWRTTIIPVLVIPVSLIGAFFLMYLFGFSINVLTLLGIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I  +  + +    +  +G    +  +  + +  +   + L F G
Sbjct: 393 LAIGLVVDDAIVVLENIYAKLEQGRPPIEAGIVGTREIFFAVIATTLALVAVFMPLLFLG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP--- 535
              G   R F +T+  +++IS F A+++   +   +++  +  S        FF      
Sbjct: 453 GLTGRLFREFGMTLAGAVVISSFVALTLTPMLSTRLLQGHRGHSWFYYKTEPFFQRMAQG 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              +++    R W     +L +   I           +  +    + + A+ P   +   
Sbjct: 513 YRRSLEAFLQRRWLAFPILLVAGGLIVWFMESLPAELVPMEDRSNISLFASGPEGATFEY 572

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +    Q+  +  +     +  +       G S +       +  K  +    +  +  +
Sbjct: 573 MDAYMDQLIRMIQEEVPEHEAIISVTSPGFGASSSVNSGFIRLILKDPDQRERTQQEIAD 632

Query: 656 IVGPKISRE 664
            +  ++   
Sbjct: 633 YLSRRVRDF 641



 Score = 86.7 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 71/188 (37%), Gaps = 9/188 (4%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           LE +KK++   + L    +         RE+ +   + + +  + + +++     W   +
Sbjct: 303 LEQIKKELPADIELGIGFDVTEYIRDSIREVQQTIFLALGLVVLIIFLFL---RDWRTTI 359

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             +  + + +        LFG   N+  +  ++  IG  V+D +VV + +          
Sbjct: 360 IPVLVIPVSLIGAFFLMYLFGFSINVLTLLGIVLAIGLVVDDAIVVLENI---YAKLEQG 416

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASS 811
               +       E     + T++A     +P+   GG        F + +A  +V+++  
Sbjct: 417 RPPIEAGIVGTREIFFAVIATTLALVAVFMPLLFLGGLTGRLFREFGMTLAGAVVISSFV 476

Query: 812 SIFIAAPI 819
           ++ +   +
Sbjct: 477 ALTLTPML 484



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 70/193 (36%), Gaps = 7/193 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
                 I E V   T         +   E  R  +   + +   + + +  +F+ +     
Sbjct: 821  AAMDAIAERVLDETFSTALAGPSRDFAESSRSLLFVFLFALALVYLILAAQFESFRDPFV 880

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             + T+ L +   L     F    N+ +   ++ LIG    + +++ +  +   +     +
Sbjct: 881  IMLTVPLALAGALLALWYFRQTLNIFSEIGMIMLIGLVTKNGILIVEFAK---QRKAAGL 937

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
               + I +  +      + TS++  + +LP+A+    G        I +  G+V+    +
Sbjct: 938  PVLEAIKEGASARFRPILMTSISTILGILPIALALGAGSESRMPMGIAIIGGMVIGTLLT 997

Query: 813  IFIAAPILLFIYD 825
            +++   I  ++  
Sbjct: 998  LYVIPAIYTYLTR 1010


>gi|270157327|ref|ZP_06185984.1| preprotein translocase subunit SecD [Legionella longbeachae D-4968]
 gi|289164278|ref|YP_003454416.1| protein-export membrane protein SecD [Legionella longbeachae
           NSW150]
 gi|269989352|gb|EEZ95606.1| preprotein translocase subunit SecD [Legionella longbeachae D-4968]
 gi|288857451|emb|CBJ11279.1| putative protein-export membrane protein SecD [Legionella
           longbeachae NSW150]
          Length = 618

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 169/525 (32%), Positives = 277/525 (52%), Gaps = 38/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       +  GLDLRGG H +LEVD +  ++   +     +   L++ GI
Sbjct: 103 NLAPSTPGWLDAIHAAPMKQGLDLRGGVHFLLEVDVESVISRRYEGIMKNISQELRELGI 162

Query: 87  GVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +R I +K + L F D +  +N    +   +          P    + +     I  
Sbjct: 163 RYTGIRFIPDKGVELRFRDPQSMDNAFIGLKEKI----------PDLIFVKSKANNGIMA 212

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +S   ++ +  + IEQ+M I+R R++++G+ E+ +Q+ G+ R+ + LPG QD +R +Q+
Sbjct: 213 SVSPTELNTMRQNTIEQTMSILRNRVNELGVGEAVVQQQGATRVAVDLPGIQDAARAKQI 272

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F+ V  +N  +          +      DG   L++ +V +SG  +  A ++
Sbjct: 273 LGGTATLQFYLVDQDNDPQIAKQTGVVPVNDKLLMMDGYPILLKRQVVLSGDSITSAVSS 332

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGR 301
           +D +T  P V I     G   F +VTR+NIGK +                    +     
Sbjct: 333 YDQQTATPAVQIQLGGGGESLFTKVTRENIGKRMAIVYVETKNNIQTVNGVEKRITHREE 392

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            + +  + Q       QI+G    + A  LA +LRAG+LP  +  +EER VG  LG ++I
Sbjct: 393 RVISAPVIQNALGNNFQITGLTDSKEASNLALLLRAGALPAAIYPIEERTVGPTLGKENI 452

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G  ++  G+ LI++ M+  Y  +GL+AD ++ LN++L  ALLS++ ATLTLP IAGIV
Sbjct: 453 RRGIISLEVGMGLILILMLSYYRFFGLIADVALLLNLVLLSALLSVIDATLTLPGIAGIV 512

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIREE R   S   ++  G+ RA+STI D+NIT LI  ++LF  G
Sbjct: 513 LTVGMAVDANVLIYERIREELRHGLSPQAAIYAGYERAFSTILDANITTLIVAIILFAVG 572

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            G VRGFA+T+ L +L SM T I+  RA++ +    + +K + I 
Sbjct: 573 TGPVRGFAVTLSLGLLTSMLTGITYTRAIVNWYYGGRTVKKLSIG 617



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 99/251 (39%), Gaps = 4/251 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G     V      ++  V    + +   +    +    +N L       G + ++     
Sbjct: 363 GKRMAIVYVETKNNIQTVNGVEKRITHREERVISAPVIQNALGNNFQITGLTDSKEASNL 422

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +   +           VGP + +E IR+GI+ + +    +LI +   +++ F L A
Sbjct: 423 ALLLRAGALPAAIYPIEERTVGPTLGKENIRRGIISLEVGMGLILILMLSYYRF-FGLIA 481

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L+L++       ++      L  +A ++  +G +V+  V++Y+R+R+ ++     +S
Sbjct: 482 DVALLLNLVLLSALLSVIDATLTLPGIAGIVLTVGMAVDANVLIYERIREELR---HGLS 538

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +  I           +  ++   I  + +   G   +  FA+ ++ G++ +  + I   
Sbjct: 539 PQAAIYAGYERAFSTILDANITTLIVAIILFAVGTGPVRGFAVTLSLGLLTSMLTGITYT 598

Query: 817 APILLFIYDWR 827
             I+ + Y  R
Sbjct: 599 RAIVNWYYGGR 609



 Score = 45.1 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 27/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  ++  +I  +GL+ A+PN   ++ + +  S  P                   VD
Sbjct: 4   KYPLWKNLMLIVIAVVGLVYAIPNLYTENPVVQISSETP-------------------VD 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            D+          +++ + L K+ +   S+      + + F+ +  +    D +   L
Sbjct: 45  YDE--------LKNQVENILNKDKLHYTSLVVQNEGVEVVFSSTDAQLLARDTIKNAL 94


>gi|283834213|ref|ZP_06353954.1| acriflavine resistance protein B [Citrobacter youngae ATCC 29220]
 gi|291070366|gb|EFE08475.1| acriflavine resistance protein B [Citrobacter youngae ATCC 29220]
          Length = 1049

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 68/690 (9%), Positives = 176/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------IAITAMY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117
                  +Q      +   +      ++      +     ITL+F      +    +V  
Sbjct: 50  PGADAETVQNTVTQVIEQNMNGIDHLMYMSSNGDSTGTATITLTFESGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++          +  + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDTISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDIINALKTQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIVAQTRLTNTE-------------EFGKILLKVNQDGSQVRLRDVAKIELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T          +          +           
Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALDTANAIRAELKKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+++ +   +  L+   ++ + ++ T A+L++ G ++   ++
Sbjct: 336 SIHEVVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         +     I+    +   +         + +G     
Sbjct: 516 FNRMFDKSTHHYTDSVGGILRSTGRYLALYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                       +  L+ +    ++ +  + E  F V      G           +K   
Sbjct: 576 AQLPAGATQERTQKVLDEVTNYYLTKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWS 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++           ++    +  
Sbjct: 636 ERPGEENKVEAITGRAMGAFSQIKDAMVFA 665



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALDTANAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A+FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAIFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEQLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LIEATLDAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|168700102|ref|ZP_02732379.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 1088

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 82/673 (12%), Positives = 188/673 (27%), Gaps = 41/673 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    G++      L +  ++ +PS  P               + +    
Sbjct: 9   RPIFANVIAVITVLFGVVA-----LSRLPVEEYPSITPPT-------------VQVTAAY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +    +  +   +   E +   S     +    +T++F      ++   +V  
Sbjct: 51  PGANARVVADTVAAPIEQQVNGVENMLYMSSTSSSDGAYALTITFKIGTNLDDAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  D ++  +    +    I++           ++  S     +  D++   
Sbjct: 111 RLAAAEPVLPEDVRRQGVKAEKQSSSIILVVSLTDPTGAHDSLFLSNYATLRLRDELSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP +L     TT  +S      N        G        
Sbjct: 171 EGVGTVTVVGAGSYSMRVWLDPDKLAARQLTTQDVSAALARQNVQVAAGQIGQSPAEPGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V     +S                +    I       +  +      +       
Sbjct: 231 RFQMTVTTLGRLS-------------DPRQFEEIILKSGEAGQLVYLRDVARVELGAQNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               V         I       +     +        ++          +          
Sbjct: 278 DMFAVQAGRESAFLIVYQLPGSNAIEVAKGVRAAMEKVKPSLPEGVEYAIPFDTTKFVDA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S    T      LVLIV+ + +   +  LV   ++ + +I   A ++LLG ++ L ++
Sbjct: 338 AISSVYHTLIEAGVLVLIVIMVFLQNWRALLVPATTVPVTIIGAFAFMALLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I++ E       K  +   +     S     I    +  +   V  
Sbjct: 398 FGLVLAIGIVVDDAIVIVENASHHIEKGLAPREATIRAMSEVTGPIISITLVLMAVFVPT 457

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F G   G   R FA+T+  + LIS   A+++  A     +R    +++       F+  
Sbjct: 458 AFLGGISGQMYRQFALTIAATALISALNALTLKPAQCAAWLRPHTGRNLFTRAFDFFYRP 517

Query: 535 PDCIAIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +      +R   + W   + +   + +    +      G   +      ++A +  D +
Sbjct: 518 LEAAYSWSVRQLLKVWWAVLIVFLGLTAGTGWWYSKTPTGFLPQEDQGWVIVAVQLPDSA 577

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    +     +       G  +++V       +                     S   
Sbjct: 578 SLSRTKDVTDKMNQILAATPGLDSWVVLGGMSLLEGTNAPNAATAFISFKDWSERKSPEL 637

Query: 653 NTEIVGPKISREL 665
             + +  ++   L
Sbjct: 638 MQQALVGRLMGSL 650



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/235 (19%), Positives = 93/235 (39%), Gaps = 9/235 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A + V L  V       Q  D+       E  FL+  Q    +++   + +    +K+ 
Sbjct: 257 EAGQLVYLRDVARVELGAQNYDMFAVQAGRESAFLIVYQLPGSNAIEVAKGVRAAMEKVK 316

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             +P            K     I      +I + + +LI I +  + W   L   TT+ +
Sbjct: 317 PSLPEGVEYAIPFDTTKFVDAAISSVYHTLIEAGVLVLIVIMVFLQNWRALLVPATTVPV 376

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLI 761
            I     F AL G   NL  +  ++  IG  V+D +V+     +N   +    ++ R+  
Sbjct: 377 TIIGAFAFMALLGFSINLLTLFGLVLAIGIVVDDAIVIV----ENASHHIEKGLAPREAT 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            ++++E  G  +  ++      +P A  G   G +   FA+ +A   +++A +++
Sbjct: 433 IRAMSEVTGPIISITLVLMAVFVPTAFLGGISGQMYRQFALTIAATALISALNAL 487



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 60/159 (37%), Gaps = 9/159 (5%)

Query: 672  GVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             ++      L+Y+ +      W      I  + L I   +      G++ N+     V+ 
Sbjct: 880  MLVFGLAVFLVYLVLAAQYESWLLPFAVILVVPLGILGVVAGINARGMDNNVYTQIGVVL 939

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +I  +  + +++ +  R+   L     S R+   ++        + TS+A  + V+P+ +
Sbjct: 940  IIALASKNAILIVEFARE---LRLAGRSVREAAVEASRLRFRPILMTSIAFILGVVPLVI 996

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   S    +  G+V +   ++F      + I 
Sbjct: 997  AEGAGAAGRQSLGTAVFGGMVTSTVLAVFFVPAFYVAIQ 1035


>gi|325272155|ref|ZP_08138586.1| preprotein translocase subunit SecD [Pseudomonas sp. TJI-51]
 gi|324102718|gb|EGC00134.1| preprotein translocase subunit SecD [Pseudomonas sp. TJI-51]
          Length = 620

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 165/525 (31%), Positives = 273/525 (52%), Gaps = 41/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD D  ++  +++Y  E+++ L+KE +
Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMSARMKVYEGEVKTLLRKERV 165

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q    I L FAD   +E     +             D             + + 
Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFN--------DFDLTTTERNDLAVLRLA 217

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F       + K       F     G    VE  + I+G  +  A A+FD    
Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAAVERGLIITGDQVTDAQASFDEHG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+I  D  G       TR N+G+ +A +   +      +                  
Sbjct: 335 RPQVNIRLDGHGGELMSRATRSNVGRSMAGIFIEQKPVTRYVKQTVDGVEKDVAVQSFVE 394

Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+I +Y  +G++A  ++  N++L LAL+SLLGATLTLP IAG
Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRGFGVIATIALAGNMVLLLALMSLLGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE +   SV  ++  GF+RAY+ I D+N+T+L+   +LF 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREELKAGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G G V+GFA+TM L I  SMFTA+ + RAM+      + +K + 
Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVNLTCGGRDIKKLW 619



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 91/250 (36%), Gaps = 5/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +     V +       + +    +    ++ L       G +         +  +
Sbjct: 372 VTRYVKQTVDGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   ++  F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-GFGVIATIALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +K     +S +  I
Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELKA---GMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820
            +  N      +  ++ + +    +   G   +  FA+ M+ GI  +  +++ +   ++ 
Sbjct: 548 HEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVN 607

Query: 821 LFIYDWRAKN 830
           L       K 
Sbjct: 608 LTCGGRDIKK 617



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 17/121 (14%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W   L  ++  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117
            D      +        + L ++G G+  +   ++++     +  A         +    
Sbjct: 51  LDRVSKALVDAKIAVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQT 110

Query: 118 F 118
            
Sbjct: 111 T 111


>gi|322834014|ref|YP_004214041.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
 gi|321169215|gb|ADW74914.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
          Length = 1050

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 179/687 (26%), Gaps = 51/687 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + L    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPIAQYPTVAPPA-------------IQLTATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +Q      +   +     +   S     +   +ITL+FA     +    +V  
Sbjct: 50  PGADAQTVQDTVTQVIEQNMNGIDNMMYMSSTSDSSGTVQITLTFASGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLATPLLPQEVQQQGISVEKSSSSFLMVAGFISNNGSMTQDDIADYVGSNVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +     + NN       G        
Sbjct: 170 AGVGDVQLFGAQ-YAMRIWMDPNKLNNFQLTPVDVINAIKVQNNQIAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I        +        I       
Sbjct: 229 QLNSSIVAQTRL-------------KSPDEFGKIILKVNQDGSQVRLKDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T  +     A L          +           
Sbjct: 276 DVIARFNGQPASGLGIKLATGANALNTAASVKATLAKLEPFFPAGLEVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIKEVGKTLFEAIVLVFLVMFLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMVEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVLVAMILTPALCATMLKPVAKGEHHEKKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + V   ++    +   +         + +G      
Sbjct: 516 NKKFEQSTHHYTDSVGNILRSTGRYLVIYLLIVVGMAFLFIRLPTSFLPEEDQGVFLTMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +    ++ +  +    F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLDEVTDYYLNKEKANVNSVFTVNGFGFAGRGQNTGIAFVSLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGI 670
                + +             +    +
Sbjct: 636 RSGAENKVPAIAGRAMGAFSTIKDALV 662



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 8/217 (3%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            + Q   G    L         + +    L  ++      + +    +T        +E+
Sbjct: 281 FNGQPASGLGIKLATGANALNTAASVKATLAKLEPFFPAGLEVVYPYDTTPFVKISIKEV 340

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            +     +++  + M +++     +   L     + + +  T    A FG   N   +  
Sbjct: 341 GKTLFEAIVLVFLVMFLFLQ---NFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFG 397

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  IG  V+D +VV + +     +    +  ++   KS+ +  G  V  +M      +P
Sbjct: 398 MVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           MA +GGS       F+I +   +V++   ++ +   +
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVLVAMILTPAL 492



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 61/166 (36%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGLSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALIA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              + G+  ++     +LT IG S  + +++ +  +  M          +   +++   L 
Sbjct: 915  ATMRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIESTLEAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G++ A   +I
Sbjct: 973  PILMTSLAFILGVMPLVISSGAGSGSQNAVGTGVMGGMITATLLAI 1018


>gi|78062044|ref|YP_371952.1| hydrophobe/amphiphile efflux pump protein [Burkholderia sp. 383]
 gi|77969929|gb|ABB11308.1| Hydrophobe/amphiphile efflux pump, HAE1 family [Burkholderia sp.
           383]
          Length = 1047

 Score =  199 bits (505), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/691 (10%), Positives = 184/691 (26%), Gaps = 50/691 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G L           ++++P+                  + + V 
Sbjct: 7   RRPIFAWVIAIVIMLAGYLAI-----RSLPINQYPNIAAPA-------------VSITVS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       +   L    G+   S     +    I  +F      +    +V 
Sbjct: 49  YPGASAQTVQDTVVQPIEQQLNGLDGLRYMSSESNADGSMTIVATFDQGTNPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L      L  + ++  +     +   ++++    +     + +    +     D I  
Sbjct: 109 NKLSLATPLLPQEVQQQGIRVVKYQINFMMVAALVSEDGKMSSGDLGNYLASNLQDPILR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           ++     L             DP++L     T   ++      N        G    R  
Sbjct: 169 TKGVGDYLLMGSQYGM-RIWLDPAKLDSYSLTPLDVTNAIRSQNVQVSSGQLGGLPTRRG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  KV +                 +    +        +        +      
Sbjct: 228 VELSATVIGKVRL-------------RTADEFKQILLKVNADGSQVKLGDVATVSLGPEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +                 +   T+E+   L         P    +V         
Sbjct: 275 YSISSMYNGKPSAGIALRLATGANLLETVESVKKLLKEQEPLLPPGVKIVVPYDTSPVVH 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   +
Sbjct: 335 ASIHEVVKTLIEGIILVFLVMYLFLQNIRATLIPTLAVPVVLLGTFGVLAACGFTINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +      +  S   +      +    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMTEEGLSAREATSKSMGQIQGALVGIAMVLSAVFL 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSI 523
            + FFGG      R F+IT+  ++ +S+  A+    A+   +         ++       
Sbjct: 455 PMAFFGGSTGVIYRQFSITIVSAMALSVLVALVFTPALCATMLKPGDADHHVKKGFFGWF 514

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    +   + V   ++                  + +G + + +
Sbjct: 515 NRTFDRGTDRYEGAVAAILRKKGRYIVIYLLIVVGMGFLFTRIPTAFLPDEDQGTLFVQL 574

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L  ++   +  +    E  + V      G           +K    
Sbjct: 575 QMPGNASAERTEDALAKVRDYLLKDEADIVESVYTVNGFNFAGRGQNSALAFVGLKPWAA 634

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                +T+            ++    ++ ++
Sbjct: 635 RKGSDTTVFGLAQRAGAAFSKIKDGIVIPIV 665



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/227 (17%), Positives = 83/227 (36%), Gaps = 7/227 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L        S  N        +RL            V +++K++   + P   I     
Sbjct: 269 SLGPENYSISSMYNGKPSAGIALRLATGANLLETVESVKKLLKEQEPLLPPGVKIVVPYD 328

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
             P +   +    +  +I   I + + +++  +     L     + + +  T G  A  G
Sbjct: 329 TSPVVHASIHE-VVKTLIEGIILVFLVMYLFLQNIRATLIPTLAVPVVLLGTFGVLAACG 387

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N   +  ++  IG  V+D +VV + +     +    +S R+   KS+ +  G  V  
Sbjct: 388 FTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLSAREATSKSMGQIQGALVGI 445

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +M      LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 446 AMVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVLVALVFTPAL 492



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 78/226 (34%), Gaps = 7/226 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + +       ++  G   + +   E+   +      G   A     E +++       L 
Sbjct: 790  NSNGQMVPFSAVASGHWEYGSPKLERYNGIPAVELQGQPTAGHSSGEAMQEIEKIAAQLP 849

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                  + G     +L       +  +S + + + +   ++ W      +  + L +   
Sbjct: 850  NGFGLAVTGLSYEEQLSGSQAPALYALSILIVFLCLAALYESWSVPFSVLMVVPLGVIGA 909

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            +      G+  ++     +LT +G S  + +++ +  ++  +     +S      ++   
Sbjct: 910  VVATLARGLTNDVFFQVGLLTTVGLSAKNAILIVEFAKELYEKE--GMSLMQAAVQAARL 967

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             L   + TSMA  + VLP+A+    G     S    +  G++ A  
Sbjct: 968  RLRPIIMTSMAFVLGVLPLAISNGAGSGSQHSVGTGVVGGMMTATF 1013


>gi|332160782|ref|YP_004297359.1| multidrug efflux protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318604668|emb|CBY26166.1| rnd efflux system, inner membrane transporter CmeB [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325665012|gb|ADZ41656.1| multidrug efflux protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 1050

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGSLAIM-----KLPVAQYPTIAPPA-------------ISISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMKQEDIADYVGSNVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNYGLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQIMLKVNTDGSQVRLKDVAIVQLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARFNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + V    +     +  L         + +G     V
Sbjct: 516 NRMFEKSTHHYTDSVGNILRSTGRYLVIYLAIVIGMGVLFLRLPTSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +    +  +       F V      G           +K    
Sbjct: 576 QMPAGATQERTQKVLDQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RPGEQNKVPAIVSRASAAFSQIKDGLVFA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVQLGAENYNIIARFNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMDLMQELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + VLP+ +    G     +    +  G++ A  
Sbjct: 958  G--LVESTLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|193078196|gb|ABO13149.2| RND family drug transporter [Acinetobacter baumannii ATCC 17978]
          Length = 1058

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/554 (11%), Positives = 154/554 (27%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGVDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNNLSDSDIKDYVNSSIKEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N+       G        
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T E      + LR        + +          
Sbjct: 276 QFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPTGLADKLAYDTTPFIRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     ++ +    +      +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEDHTDPVTATSRSMQQISGALVGITSVLTAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A++   A+   I++         N +   F 
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                    M   +
Sbjct: 516 RSFNNGFDRMSHSY 529



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +        L        +++     +E    ++ +  P 
Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPT 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I   +  +I + I + I +++  + W   +     + + +  T
Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N   + A++  IG  V+D +VV + +     +            +S+ +
Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEDHTDPVTATSRSMQQ 437

Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G  V  TS+      +PMA +GG   VI   F+I +   +V++   ++     +   I
Sbjct: 438 ISGALVGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496

Query: 824 YDWRAKNA 831
                 N 
Sbjct: 497 LKQHDPNK 504



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 17/232 (7%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-- 672
                             +       +KI   +P   +Q  +     +S E    G     
Sbjct: 821  NGVSSVNIQGTPAPGVSSGDAMKAMEKIIGKLPSMGLQGFDYEWTGLSLEERESGAQAPF 880

Query: 673  -VIISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALF-----GIEFNLTAV 723
               +S + + + +   ++     F++  +  L +     L +  +       +  N+   
Sbjct: 881  LYALSLLIVFLCLAALYESWSIPFSVLLVVPLGVIGAIVLTYLGMIIKGDPNLSNNIYFQ 940

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             A++ +IG S  + +++ +  ++   L        D    +    L   + T++A    V
Sbjct: 941  VAIIAVIGLSAKNAILIVEFAKE---LQEKGEDLLDATLHAAKMRLRPIIMTTLAFGFGV 997

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            LP+A+    G     S    +  G++ A    IF      ++I        +
Sbjct: 998  LPLALSTGAGAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSIFKYKPK 1049


>gi|60207557|gb|AAX14802.1| AdeJ [Acinetobacter baumannii]
          Length = 1058

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/554 (11%), Positives = 154/554 (27%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGVDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNNLSDSDIKDYVNSSIKEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N+       G        
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T E      + LR        + +          
Sbjct: 276 QFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPTGLADKLAYDTTPFIRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     ++ +    +      +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEDHTDPVTATSRSMQQISGALVGITSVLTAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A++   A+   I++         N +   F 
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                    M   +
Sbjct: 516 RSFNNGFDRMSHSY 529



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +        L        +++     +E    ++ +  P 
Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPT 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I   +  +I + I + I +++  + W   +     + + +  T
Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N   + A++  IG  V+D +VV + +     +            +S+ +
Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEDHTDPVTATSRSMQQ 437

Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G  V  TS+      +PMA +GG   VI   F+I +   +V++   ++     +   I
Sbjct: 438 ISGALVGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496

Query: 824 YDWRAKNA 831
                 N 
Sbjct: 497 LKQHDPNK 504



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 15/245 (6%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            E         +        +         S    + +E +  K+  +           + 
Sbjct: 809  EWTYGSPRLERYNGVSSVNIQGTPAPGVSSGDAMKAMEEIIGKLPSMGLQGFDYEWTGLS 868

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             +      +   +  +   I  L    +   W      +  + L +   +      G+  
Sbjct: 869  LEERESGAQAPFLYALSLLIVFLCLAALYESWSIPFSVLLVVPLGVIGAI-VLTYLGMII 927

Query: 719  --------NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                    N+    A++ +IG S  + +++ +  ++   L        D    +    L 
Sbjct: 928  KGDPNLSNNIYFQVAIIAVIGLSAKNAILIVEFAKE---LQEKGEDLLDATLHAAKMRLR 984

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T++A    VLP+A+    G     S    +  G++ A    IF      ++I    
Sbjct: 985  PIIMTTLAFGFGVLPLALSTGAGAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSMF 1044

Query: 828  AKNAR 832
                +
Sbjct: 1045 KYKPK 1049


>gi|288933309|ref|YP_003437368.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
 gi|288888038|gb|ADC56356.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
          Length = 1036

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/682 (10%), Positives = 185/682 (27%), Gaps = 42/682 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  L     Q  + ++P+  P                     +
Sbjct: 8   RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +     +  ITL+F      +    +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D   +   + S  +     D I       
Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPATTQDDISDYVASNVKDPISRLNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D + L +   T   +     + N+       G            
Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALKVQNDQIAAGQLGGTPALKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +                      I           
Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +          +   T        A L+         +           S   
Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++ G+V
Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   + +   S+    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
           GG      R F+IT+  ++ +S+  A+ +  A+   +          +       +    
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                  + ++        + V   ++    ++  +         + +G     +     
Sbjct: 520 QSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                 +  L+++    +  +  + E  F V      G           +K         
Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDE 639

Query: 649 STIQNTEIVGPKISRELIRKGI 670
           + +++          ++    +
Sbjct: 640 NNVESIIKRATVAFSQIKDAMV 661



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +            G + L V A+  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680
           +   G +   T      K    +      ++           ++ I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    ++FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +S ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 837  EAMALMEQLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 896

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L    L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 897  FSVMLVVPLGVIGALLAATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 956

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 957  G--IIEATLEASRMRLRPILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATL 1014

Query: 811  SSI 813
             +I
Sbjct: 1015 LAI 1017


>gi|262038159|ref|ZP_06011556.1| protein-export membrane protein SecF [Leptotrichia goodfellowii
           F0264]
 gi|261747807|gb|EEY35249.1| protein-export membrane protein SecF [Leptotrichia goodfellowii
           F0264]
          Length = 319

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/286 (26%), Positives = 150/286 (52%), Gaps = 2/286 (0%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           + + +G S +  + SI    T  LN G+DFKGG  L +  ++ V+   +   L+ +    
Sbjct: 9   KKYYLGFSAIMVLISIIFFLTIKLNLGVDFKGGDLLQLHYSQAVNKDTLNGALDGIINEV 68

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
              +N   + +    +  +             V K++TE      +   + VGP I +EL
Sbjct: 69  PQLKNRRLQYSEDNTIVLR--TEQLTDAQKNAVLKQLTEKTGKYELVKYDTVGPTIGKEL 126

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               +  ++I ++ ++IYI IRF++ +A+  +  ++ D+   +G  A    E N   +AA
Sbjct: 127 TSNALTALLIGSLLIIIYITIRFEFVYAVAGVAAVLHDVIIAMGLIAFLKYEINTPFIAA 186

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +LT++GYS+ND +VV+DR+R+N      +  F ++I++S+N+   RS++TS+   +S+  
Sbjct: 187 ILTILGYSMNDTIVVFDRIRENDAKEGKTKDFAEIIEESVNQVYMRSLFTSLTTLLSITV 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + ++GG  + +F   +  G++    SSIF+A+P++  +  +R K  
Sbjct: 247 LLIFGGDSLRTFNTALFIGMIFGTYSSIFVASPLVYLMRKYRKKRK 292


>gi|167855990|ref|ZP_02478736.1| protein-export membrane protein SecD [Haemophilus parasuis 29755]
 gi|167852872|gb|EDS24140.1| protein-export membrane protein SecD [Haemophilus parasuis 29755]
          Length = 603

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 159/523 (30%), Positives = 273/523 (52%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       +  GLDLRGG H ++EVD +  +        D LR+  +KE  
Sbjct: 93  NLAPATPEWLTSIGGEPMKRGLDLRGGVHFLMEVDMNTALAKQQDQLQDTLRNDFRKEKW 152

Query: 87  GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N  T + F D+   +     +       N  L        +V   +    +
Sbjct: 153 QYKAVKKAENFATDVEFNDTDTADKAVRYIRRT----NPNLEATYISPTVVRFAQSAQGL 208

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
                        AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R +++
Sbjct: 209 -------ATSRDLAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N + +    G+           DG   ++  K  + G H+     +
Sbjct: 262 LGATATLEFRLVNGNANLESAARGIVPADSEIKYSRDGMPTVLYRKTILGGEHI-INATS 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G       T+  +GKP+A +                       
Sbjct: 321 GKDERGLPNVSINLDAQGGDLMSNATKSAVGKPMATLYSEFKDSGRRDANGKVILEKHEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +      QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 381 VINVATINSRLGSSFQITGINSAAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A + GL L +LF +V Y  +GL A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 QGMDASMLGLGLTILFCVVYYKVFGLFATAALLANLVLTIGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+++D+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++  ++L+  G 
Sbjct: 501 AVGMSIDANVLIYERIKEEIRNGRSIQQAIHEGYNGAFTSIFDSNLTTILVAIILYSVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFA+T+ L ++ISMFTAI+  R ++  +   K++K + I
Sbjct: 561 GPVKGFAVTLALGVMISMFTAITGTRMLVNLVYGGKRVKKLWI 603



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 98/247 (39%), Gaps = 4/247 (1%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +   D     +N + +        N     + L       G + A       V  +   
Sbjct: 358 YSEFKDSGRRDANGKVILEKHEEVINVATINSRLGSSFQITGINSAAEAQNLAVLLRSGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +G  +  + + +G+   ++     +++  + +K  F L A   L+ ++
Sbjct: 418 LIAPIVIVEERTIGASLGADNVAQGMDASMLGLGLTILFCVVYYKV-FGLFATAALLANL 476

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T+G  +L G    +  +A ++  +G S++  V++Y+R+++ ++      S +  I + 
Sbjct: 477 VLTIGLMSLIGATLTMPGIAGIVLAVGMSIDANVLIYERIKEEIR---NGRSIQQAIHEG 533

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            N        +++   +  + +   G   +  FA+ +A G++++  ++I     ++  +Y
Sbjct: 534 YNGAFTSIFDSNLTTILVAIILYSVGTGPVKGFAVTLALGVMISMFTAITGTRMLVNLVY 593

Query: 825 DWRAKNA 831
             +    
Sbjct: 594 GGKRVKK 600


>gi|169632593|ref|YP_001706329.1| putative RND protein (AdeB-like) [Acinetobacter baumannii SDF]
 gi|169794917|ref|YP_001712710.1| putative RND protein (AdeB-like) [Acinetobacter baumannii AYE]
 gi|184159308|ref|YP_001847647.1| cation/multidrug efflux pump [Acinetobacter baumannii ACICU]
 gi|213157678|ref|YP_002320476.1| multidrug efflux protein AdeJ [Acinetobacter baumannii AB0057]
 gi|215482463|ref|YP_002324649.1| AcrB protein [Acinetobacter baumannii AB307-0294]
 gi|239502315|ref|ZP_04661625.1| AcrB protein [Acinetobacter baumannii AB900]
 gi|260557282|ref|ZP_05829498.1| multidrug efflux protein AdeJ [Acinetobacter baumannii ATCC 19606]
 gi|301344910|ref|ZP_07225651.1| AcrB protein [Acinetobacter baumannii AB056]
 gi|301511081|ref|ZP_07236318.1| AcrB protein [Acinetobacter baumannii AB058]
 gi|301595156|ref|ZP_07240164.1| AcrB protein [Acinetobacter baumannii AB059]
 gi|332854204|ref|ZP_08435224.1| inner membrane multidrug efflux protein BpeB [Acinetobacter
           baumannii 6013150]
 gi|332866354|ref|ZP_08436959.1| inner membrane multidrug efflux protein BpeB [Acinetobacter
           baumannii 6013113]
 gi|332872569|ref|ZP_08440538.1| inner membrane multidrug efflux protein BpeB [Acinetobacter
           baumannii 6014059]
 gi|88758802|emb|CAJ77871.1| RND family drug transporter [Acinetobacter baumannii AYE]
 gi|169147844|emb|CAM85707.1| putative RND protein (AdeB-like) [Acinetobacter baumannii AYE]
 gi|169151385|emb|CAP00110.1| putative RND protein (AdeB-like) [Acinetobacter baumannii]
 gi|183210902|gb|ACC58300.1| Cation/multidrug efflux pump [Acinetobacter baumannii ACICU]
 gi|213056838|gb|ACJ41740.1| multidrug efflux protein AdeJ [Acinetobacter baumannii AB0057]
 gi|213985717|gb|ACJ56016.1| AcrB protein [Acinetobacter baumannii AB307-0294]
 gi|260409388|gb|EEX02690.1| multidrug efflux protein AdeJ [Acinetobacter baumannii ATCC 19606]
 gi|322509219|gb|ADX04673.1| AdeJ [Acinetobacter baumannii 1656-2]
 gi|323519248|gb|ADX93629.1| cation/multidrug efflux pump [Acinetobacter baumannii TCDC-AB0715]
 gi|332728129|gb|EGJ59517.1| inner membrane multidrug efflux protein BpeB [Acinetobacter
           baumannii 6013150]
 gi|332734702|gb|EGJ65806.1| inner membrane multidrug efflux protein BpeB [Acinetobacter
           baumannii 6013113]
 gi|332739255|gb|EGJ70113.1| inner membrane multidrug efflux protein BpeB [Acinetobacter
           baumannii 6014059]
          Length = 1058

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/554 (11%), Positives = 154/554 (27%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGVDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNNLSDSDIKDYVNSSIKEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N+       G        
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T E      + LR        + +          
Sbjct: 276 QFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPTGLADKLAYDTTPFIRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     ++ +    +      +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEDHTDPVTATSRSMQQISGALVGITSVLTAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A++   A+   I++         N +   F 
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                    M   +
Sbjct: 516 RSFNNGFDRMSHSY 529



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +        L        +++     +E    ++ +  P 
Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPT 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I   +  +I + I + I +++  + W   +     + + +  T
Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N   + A++  IG  V+D +VV + +     +            +S+ +
Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEDHTDPVTATSRSMQQ 437

Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G  V  TS+      +PMA +GG   VI   F+I +   +V++   ++     +   I
Sbjct: 438 ISGALVGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496

Query: 824 YDWRAKNA 831
                 N 
Sbjct: 497 LKQHDPNK 504



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 71/245 (28%), Gaps = 15/245 (6%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            E         +        +         S    + +E +  K+  +           + 
Sbjct: 809  EWTYGSPRLERYNGVSSVNIQGTPAPGVSSGDAMKAMEEIIGKLPSMGLQGFDYEWTGLS 868

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             +      +   +  +   I  L    +   W      +  + L +   +      G+  
Sbjct: 869  LEERESGAQAPFLYALSLLIVFLCLAALYESWSIPFSVLLVVPLGVIGAI-VLTYLGMII 927

Query: 719  --------NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                    N+    A++ +IG S  + +++ +  ++   L        D    +    L 
Sbjct: 928  KGDPNLSNNIYFQVAIIAVIGLSAKNAILIVEFAKE---LQEKGEDLLDATLHAAKMRLR 984

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T++A    VLP+A+    G     S    +  G++ A    IF      ++I    
Sbjct: 985  PIIMTTLAFGFGVLPLALSTGAGAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSIF 1044

Query: 828  AKNAR 832
                +
Sbjct: 1045 KYKPK 1049


>gi|170723504|ref|YP_001751192.1| preprotein translocase subunit SecD [Pseudomonas putida W619]
 gi|169761507|gb|ACA74823.1| protein-export membrane protein SecD [Pseudomonas putida W619]
          Length = 620

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 165/525 (31%), Positives = 272/525 (51%), Gaps = 41/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD D  ++  +++Y  E+++ L+KE +
Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMSARMKVYEGEVKTLLRKERV 165

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q    I L FAD   +E     +             D             + + 
Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFS--------DFDLTTSERNETAVLRLA 217

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F       + +       F     G    VE  + I+G  +  A A+FD    
Sbjct: 278 GKTANLEFRFGAEPGASRATTEVFEFREG--GRSAQVERGLIITGDQVTDAQASFDEHG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+I  D  G       TR N+G+ +AV+   +      +                  
Sbjct: 335 RPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQTVNGVEKDVPVQSFLE 394

Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKKIISLATIQSPLGSQFRITGLDGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+I +Y  +G++A  ++  N++L LAL+SLLGATLTLP IAG
Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     SV  ++  GF+RAYS I D+N+T L+   +LF 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G G V+GFA+TM L I  SMFTA+ + RA++      + +K + 
Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKLW 619



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 88/250 (35%), Gaps = 5/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +     V +       + +    +    ++ L       G           +  +
Sbjct: 372 VTRYVKQTVNGVEKDVPVQSFLEEKKIISLATIQSPLGSQFRITGLDGQGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   ++  F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-AFGVLATIALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      +S +  I
Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820
            +  N      V  ++   +    +   G   +  FA+ M+ GI  +  +++ +   ++ 
Sbjct: 548 HEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVN 607

Query: 821 LFIYDWRAKN 830
           L       K 
Sbjct: 608 LTCGGRDIKK 617



 Score = 45.5 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 35/385 (9%), Positives = 93/385 (24%), Gaps = 28/385 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W   L  ++  IG + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYALIVLVLAIGFIYSAPNLYPDDPAVQISGASSALQVN-------------QSD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117
            D       +       + L ++G  +  +   ++++     +  A         +    
Sbjct: 51  LDRVSKALTEAGITVKGASLGEKGSALVRLSNQEDQLPAKDVVRKALGDDYVVALNLAQT 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                        +                    ++  +  A+   M++    +  +   
Sbjct: 111 T--------PQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMSARMKVYEGEVKTLLRK 162

Query: 178 ESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
           E    R        I++    +    + R L+              N        +   +
Sbjct: 163 ERVRYRSLPQQDGGIMLGFADDATREQARALIRKNFSDFDLTTSERNETAVLRLALTQAK 222

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            ++  +Y ++  +      +N           +    I  +  G +   E  R       
Sbjct: 223 VAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 282

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                G    A      +   +             I    +         +   + N+  
Sbjct: 283 LEFRFGAEPGASRATTEVFEFREGGRSAQVERGLIITGDQVTDAQASFDEHGRPQVNIRL 342

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFM 379
           D     +         G  + V+F+
Sbjct: 343 DGHGGELMSRATRSNVGRSMAVIFI 367


>gi|206578338|ref|YP_002236321.1| acriflavine resistance protein F [Klebsiella pneumoniae 342]
 gi|290511640|ref|ZP_06551009.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Klebsiella sp.
           1_1_55]
 gi|206567396|gb|ACI09172.1| acriflavine resistance protein F [Klebsiella pneumoniae 342]
 gi|289776633|gb|EFD84632.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Klebsiella sp.
           1_1_55]
          Length = 1036

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 73/682 (10%), Positives = 185/682 (27%), Gaps = 42/682 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  L     Q  + ++P+  P                     +
Sbjct: 8   RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +     +  ITL+F      +    +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D   +   + S  +     D I       
Sbjct: 114 ATPLLPQEVQQQGISVEKSSSSFLLVAGFISDNPATTQDDISDYVASNVKDPISRLNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D + L +   T   +     + N+       G            
Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALKVQNDQIAAGQLGGTPALKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +                      I           
Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +          +   T        A L+         +           S   
Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++ G+V
Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   + +   S+    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
           GG      R F+IT+  ++ +S+  A+ +  A+   +          +       +    
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                  + ++        + V   ++    ++  +         + +G     +     
Sbjct: 520 QSVNHYTNSVSGILRGTGRYLVIYLVIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                 +  L+++    +  +  + E  F V      G           +K         
Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDE 639

Query: 649 STIQNTEIVGPKISRELIRKGI 670
           + +++          ++    +
Sbjct: 640 NNVESIIKRATVAFSQIKDAMV 661



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +            G + L V A+  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680
           +   G +   T      K    +      ++           ++ I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    ++FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +S ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 837  EAMALMEQLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 896

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L    L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 897  FSVMLVVPLGVIGALLAATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 956

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 957  G--IIEATLEASRMRLRPILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATL 1014

Query: 811  SSI 813
             +I
Sbjct: 1015 LAI 1017


>gi|222824047|ref|YP_002575621.1| protein-export membrane protein SecD [Campylobacter lari RM2100]
 gi|222539269|gb|ACM64370.1| protein-export membrane protein SecD [Campylobacter lari RM2100]
          Length = 526

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 171/547 (31%), Positives = 292/547 (53%), Gaps = 37/547 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MR+    +  I++ ++  IGL+ ++P+F+               +I+LGLDL+GG H++L
Sbjct: 1   MRSGKITYRSIIFFVVFLIGLIFSIPSFMQTQSGA---------KINLGLDLQGGLHMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            V+ ++ V   ++  +  L   + KE I V  ++     I  S  D      +   +   
Sbjct: 52  GVEVEEAVKSKVKSIASSLSYSVNKEDIIVDKIKVNDTSIEFSLLDENDVAKVDLLLKDI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                            +T       + L+Q  I      AI Q++E IR R+DQ G++E
Sbjct: 112 KGLA-------------ITHENLHYILSLTQEEIKLTHEQAILQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPN--------NSKKGFM 227
             + R G  +IL++LPG +   D +R R+L+   A +   +V              +   
Sbjct: 159 PNVARSGEDKILVELPGIKTTADEARARELIAKAAHLQLMEVDDVRMDQVNNLTPAQAAE 218

Query: 228 FGVRFLRD--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
           +G     D  +   +YLV+    + G  L  A   F    + PV++ + +  GA++F + 
Sbjct: 219 YGDLIFEDAKNPQIKYLVKSIPILDGSMLTDAKVGFAQSNNLPVINFTLNSEGAKKFGDY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T +N+GK LA+VLD +V +AP IN+ I  G  QISG+FT+E A  +A  LR+G+L   + 
Sbjct: 279 TGNNVGKRLAIVLDNKVYSAPRINERIGGGSGQISGSFTVEEAHDVAIALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R+VG  LG+DSI     A+    +L++ FM++ YG  G+ A+ ++  N+++ +A++
Sbjct: 339 MLEKRSVGPSLGADSIKMSMIALAGASILVIAFMVMYYGIAGIFANIALVANILVIIAIM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVDSN+++NERIRE  R+  S+  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDSNVIINERIRELLREGASIRQSVENGYKHAMSAILD 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +NIT+LI ++VL+ +G GAV+GFA+T+ + IL+SM T+I     M    +   +  +   
Sbjct: 459 ANITSLITSIVLYAYGTGAVKGFAVTLSIGILVSMITSIVGTHGMFEMFMNRMEKSNNTR 518

Query: 526 NPLSRFF 532
                  
Sbjct: 519 LWFGYRR 525



 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I+  ++ +  ++I ++ ++ + +     + A   L+ +I   +   A+FG
Sbjct: 344 SVGPSLGADSIKMSMIALAGASILVIAFMVMYYGI-AGIFANIALVANILVIIAIMAMFG 402

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++ +R+R+ ++      S R  ++      +   +  
Sbjct: 403 ATLTLPGMAGLVLTVGMAVDSNVIINERIRELLRE---GASIRQSVENGYKHAMSAILDA 459

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++ + I+ + +  +G   +  FA+ ++ GI+V+  +SI     +     +   K+ 
Sbjct: 460 NITSLITSIVLYAYGTGAVKGFAVTLSIGILVSMITSIVGTHGMFEMFMNRMEKSN 515


>gi|312143977|ref|YP_003995423.1| protein-export membrane protein SecF [Halanaerobium sp.
           'sapolanicus']
 gi|311904628|gb|ADQ15069.1| protein-export membrane protein SecF [Halanaerobium sp.
           'sapolanicus']
          Length = 286

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 84/286 (29%), Positives = 154/286 (53%), Gaps = 4/286 (1%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R     IS +     +  L  +GLN GIDF GG  +       V    VR+ L+ + I
Sbjct: 5   GKRKIWYIISSILIGIGLVFLLINGLNLGIDFLGGTIMEFSVEENVGTEDVRAVLQQIGI 64

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            + +      +      +          +  +  V++ I +      +  T++VGP I +
Sbjct: 65  AEDATIQETDQDGLRGIM---IRGQALDSDQILAVEQAINDEFENVEMLRTDMVGPTIGQ 121

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL    ++ +++++IA++ YI  RF++ FA  +I TL+ D+  T+G FA+ G E N   V
Sbjct: 122 ELRINALLAMLVASIAIVAYISFRFEFRFAAVSIITLMHDVLITIGIFAMLGREVNTPFV 181

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA+LT++GYS+ND +V++DR+R+NMKL    + F +  + ++ +TL RS+ TS+   +++
Sbjct: 182 AALLTIVGYSINDTIVIFDRIRENMKLM-HKVPFIEQANTAVVDTLPRSINTSITTLVAI 240

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           L +  +GG+ + +F + +  G+     SS+FIA+P+L+   +  +K
Sbjct: 241 LAIYFFGGASLQTFMLALFIGMFSGTYSSVFIASPLLVTWQNRISK 286


>gi|117926440|ref|YP_867057.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Magnetococcus
           sp. MC-1]
 gi|117610196|gb|ABK45651.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Magnetococcus sp. MC-1]
          Length = 1041

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/549 (12%), Positives = 148/549 (26%), Gaps = 41/549 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L  L     +  ++++P+  P               + +    
Sbjct: 9   RPVFAWVIAIVIMLAGVLSIL-----RLPVEQYPNIAPP-------------SVSINASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   L            S       IT++F      +    +V  
Sbjct: 51  PGASAETLENSVTQIIEQSLTGIDHMRYFSSSSDASGMASITITFEPEADPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +  T      ++++    +      +E    +  +  D I   
Sbjct: 111 KLQAAMPLLPPEVQQQGVSVTKANNSFLMVAGFYSEDGSISQMELGDMLNSKVKDAIARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +       N+       G    R   
Sbjct: 171 NGVGSVTIFGEP-HAMRIWLDPRKLFSYNLTVMDVQQAIRAQNSDISAGQLGGLPARKGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                      +        +        +       
Sbjct: 230 QLNATITAQSRL-------------QSVEDFQRILLRVNTDGSQVRLQDVARVELGAQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           S  +  +   T        A L          I           
Sbjct: 277 GRVVRYKRLPAAGVAVSLASGANALDTAAAVKARIAELSQTLPAKVKIIYPYDTTPFVKL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++ T  +LS  G ++ + ++
Sbjct: 337 SIKEVIKTLVEAVFLVFVVMFLFLQNFRATLIPTIAVPVVLLGTFGVLSAFGFSINVLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +         S   +      +    +    +      V 
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMEHEGLSPREATRKSMQQITGALVGIALVLSAVFVP 456

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF    G   R F+IT+  ++ +S+  A+ +  ++    ++              F  
Sbjct: 457 MAFFSGSAGAIYRQFSITIVSAMTLSVVVALVLSPSLCATFLKPAVKGEHSHGFFGWFNR 516

Query: 534 IPDCIAIQF 542
             +    +F
Sbjct: 517 TFNAGRERF 525



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 82/197 (41%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    +  + + +   V +    +T        +E+I+  +  V +  + M +++ 
Sbjct: 302 DTAAAVKARIAELSQTLPAKVKIIYPYDTTPFVKLSIKEVIKTLVEAVFLVFVVMFLFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G  + FG   N+  + A++  IG  V+D +VV + + 
Sbjct: 362 ---NFRATLIPTIAVPVVLLGTFGVLSAFGFSINVLTMFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
               +    +S R+   KS+ +  G  V  ++      +PMA + GS   +   F+I + 
Sbjct: 418 -ERIMEHEGLSPREATRKSMQQITGALVGIALVLSAVFVPMAFFSGSAGAIYRQFSITIV 476

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ ++  +
Sbjct: 477 SAMTLSVVVALVLSPSL 493



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 87/270 (32%), Gaps = 13/270 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +     + V  +   ++  S     +   N  G  N           
Sbjct: 775  PYRMMPADLDQWYVRNTQGKMVPFAAFSTSRWSYGAPKLERFNGSGSVNIQGSAAPGVST 834

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + +M++K    I       + E         ++        +S + + + +   
Sbjct: 835  GTAMQEIEQMLQKLPAGIGLEWVGLSYEEQRSGAQAPILY------AVSILFIFLCLAAL 888

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      I ++ L I   +     +G+  ++     +LT +G +  + +++ +  + 
Sbjct: 889  YESWSVPFSVILSVPLGILGAVLAAKSYGLNNDVYFQVGLLTTMGLASKNAILIVEFAK- 947

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
              K Y   +  R        +     + TSMA  + V P+AV    G +   +  I +  
Sbjct: 948  --KQYQAGMDLRTATLMGAKQRFRPIIMTSMAFVLGVSPLAVANGAGSASQNAIGISVVG 1005

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G++ A   +IF      + I        ++
Sbjct: 1006 GMLAATFIAIFFVPMFYMGIQRLARAPEQL 1035


>gi|227112200|ref|ZP_03825856.1| aminoglycoside/multidrug efflux system [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 1038

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 189/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           L+++P   P               + +    
Sbjct: 8   RPIFAWVLAILLSLCGMLAI-----KSLPLEQYPDLAPP-------------SVRITASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q ++ L+F      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLMYMSSDSSNTGQARVMLTFEAGTDPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + +I++             + +  +     + I   
Sbjct: 110 QLQSAIRKLPQDVQQQGVTVSKTGDTNILMVAFVSTDGSMDKQDIADYVATNIQEPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     TT+ +       N+       G     D+ 
Sbjct: 170 SGVGEVSAYGSQ-YAMRIWLDPAKLMDYALTTSDVVRAIESQNSQVSVGQVGGVPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +        +             +       
Sbjct: 229 VLNATINAQSLL-------------ETPQQFRDITLRVKQDGSAVTLANVAEVELGAERY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    +  +  +   T +        L           +          
Sbjct: 276 DFLSRFNGQSASGLGVTLASGANELETDKRVRERIEELSQYFPHGLEAKIAFETSPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G +L   ++
Sbjct: 336 SITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGFSLNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQVQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+++S+  A+++  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVTSMILSVLVAMTLTPALCATLLKPLAKGQHHGRKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +           +    + +  W +    +  I +             + +G     V
Sbjct: 516 NRSFTRTSLKYERGVGKILISSGRWLLLYMGIIGIMAFLFFRLPTSFLPQEDRGVFTTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +  ++   ++ +  +    F        G+     R+   +K    
Sbjct: 576 QLPPGSTQQQTLQVVNKIEQYYLTQEKDNVTSVFSTIGSGPGGNGQNVARLFVRLKDWGE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              P S+         K  R +    +  
Sbjct: 636 RTTPESSSFAVIERATKAFRSIKEARVFA 664



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +  D   +      + L        + +   + +    +++++  P 
Sbjct: 260 VTLANVAEVELGAERYDFLSRFNGQSASGLGVTLASGANELETDKRVRERIEELSQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +  + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAFETSPFVKASITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FAVLYAFGFSLNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +GG+       F+I +   ++++   ++ +   +   + 
Sbjct: 438 VQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSITIVTSMILSVLVAMTLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 76/249 (30%), Gaps = 13/249 (5%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 D      +   +   V  S             +   N       +          
Sbjct: 777  FRMLPDDVSKWYVRNNSGGMVPFSAFAQTAWETGSPRLERYNGYSSLEIVGEATPGVSTG 836

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   +  +V +         T  + +     +        +  +  S + + + +   +
Sbjct: 837  TAMNVMESLVAQLPEGFGLQWTGMSLQERLSGVQAP----ALYAI--SLLVVFLCLAALY 890

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +  + + +   L      G+E ++     +LT++G S  + +++ +   + 
Sbjct: 891  ESWTVPFSVMLVVPMGVLGALVATLARGLENDVYFQVGLLTVVGLSAKNAILIVEFANE- 949

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
              +        +   ++  + L   + TS+A    VLPMA     G +   +    +  G
Sbjct: 950  --MNQKGKDLVEATLEASRQRLRPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVIGG 1007

Query: 805  IVVAASSSI 813
            ++ A   +I
Sbjct: 1008 MLAATFLAI 1016


>gi|218548097|ref|YP_002381888.1| aminoglycoside/multidrug efflux system [Escherichia fergusonii ATCC
           35469]
 gi|218355638|emb|CAQ88250.1| aminoglycoside/multidrug efflux system [Escherichia fergusonii ATCC
           35469]
          Length = 1037

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/681 (9%), Positives = 172/681 (25%), Gaps = 47/681 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +IC  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILICLTGTLAIF-----SLPVEQYPELSPP-------------NVRISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TL+F      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLTFEAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSALRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G        
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSIPQQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRAITLRVNQDGSEVKLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           V          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L     ++   ++
Sbjct: 336 SIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLYAFDYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINP 527
           + FFGG      R F+IT+  ++++S+  A+ +  A+   I++          K      
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATILKPLHKGEQHGQKGFFGWF 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
              F    D       +     +   +++ +    ++               +     + 
Sbjct: 516 NRVFNRNADRYERGVAKILHRSLRWLLIYLLLISGMVVLFMRLPSSFLPQEDRGMFTTSV 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            +     +     +      +     + N +              + +  +  ++ +   
Sbjct: 576 QLPSGSTQQQTLKVVEQVEKYFFTHEKDNIMSVFATVGSGPGGNGQNVARMFVRLKDWDD 635

Query: 648 LSTIQNTEIVGPKISRELIRK 668
                 +       + +  +K
Sbjct: 636 RDPKTGSAFAIIDRATQAFKK 656



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 83/235 (35%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  + +     ++ +  P 
Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  +     L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 F    N   + A++  IG  V+D +VV + +     +    +S R    KS+ +
Sbjct: 380 FAVLYAFDYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRAATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 80/269 (29%), Gaps = 13/269 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  D      +       V  S   ++        +   N       +         
Sbjct: 776  PYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAARGVST 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   +  +V +         T  + +              +  +  S + + + +   
Sbjct: 836  GTAMEIMENLVHQLPGGFGLEWTAMSYQERLSGAQAP----ALYAI--SLLVIFLCLAAL 889

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      +  + L +   L    + G+E ++     +LT+IG +  + +++ +    
Sbjct: 890  YESWSVPFSVMLVVPLGVVGALLATWMRGLENDVYFKVGLLTVIGLAAKNAILIVEFAND 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
               +        +    +  + L   + TS+A    VLPMA+    G +   +    +  
Sbjct: 950  ---MNQKGHDLLEATLHACRQRLRPILMTSLAFIFGVLPMAISNGAGSASQHAVGTGVMG 1006

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G++ A   +I+      + +        R
Sbjct: 1007 GMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|295097986|emb|CBK87076.1| Cation/multidrug efflux pump [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 593

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/592 (11%), Positives = 158/592 (26%), Gaps = 46/592 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G+L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGVLAI-----TSLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLSFTAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSALRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L  +  T   ++      N        G     D+ 
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPNKLNSVQMTAKDVTDAIESQNAQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           V          
Sbjct: 276 DYLSRFNGNAASGLGVKLASGANEMATAQRVLERLDELSHFFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +     +K +          
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATL-----LKPLHKGEHHGQKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   F R               S+  +  + L  G      ++L    
Sbjct: 511 FFGWFNRMFNRNAARYEAGVGKVLHRSVRWMVVYVLLLGGMVFLFLRLPTSF 562



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  + +     +++   P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGNAASGLGVKLASGANEMATAQRVLERLDELSHFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FAVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|121606772|ref|YP_984101.1| preprotein translocase subunit SecF [Polaromonas naphthalenivorans
           CJ2]
 gi|120595741|gb|ABM39180.1| protein translocase subunit secF [Polaromonas naphthalenivorans
           CJ2]
          Length = 317

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 163/302 (53%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS +    ++  LF+ GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFKIRRDIPFMRHALIFNLISFVTFALAVFFLFSRGLHLSVEFTGGTLMEVNYTQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R  +  L + D+  QNF   ++ ++RL  Q G S AQ    + V   +    P  T
Sbjct: 61  VGKIRDTVAGLGLNDVQVQNFGTSRDVMIRLPAQKGVSTAQQS--DTVLAALKTASPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL + G+  + +    +++Y+  RF+W +A+ AI   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGEELAQDGLKALAMVVFGIMVYLAFRFEWKYAVAAIIANLHDVIIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AAVL ++GYSVN+ VV++DR+R+N + Y   ++  ++I+ +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAVLAVLGYSVNESVVIFDRIRENFRRYRK-MNTEEIINNAITSTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  I VL M ++GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHGSTQIMVLSMLLFGGPTLFYFALALTIGILFGIYSSVFVAAAIAMWLGIKREDL 297

Query: 831 AR 832
            +
Sbjct: 298 IK 299


>gi|238795511|ref|ZP_04639026.1| Acriflavine resistance protein B [Yersinia mollaretii ATCC 43969]
 gi|238720630|gb|EEQ12431.1| Acriflavine resistance protein B [Yersinia mollaretii ATCC 43969]
          Length = 1050

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 179/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGILAIM-----KLPVAQYPTIAPPA-------------ISISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 TGVGDVQLFGSQ-YAMRIWMDPHKLNNYNLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQIMLKVNTDGSQVRLKDVAIVQLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +A        + V   ++     +  L         + +G     V
Sbjct: 516 NRMFEKSTHHYTDSVANILRSTGRYLVIYLVIVIGMGVLFLRLPSSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L  +    +  +       F V      G           +K    
Sbjct: 576 QMPAGATQERTQKVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RPGEQNKVPAIVGRASAAFSQIKDGLVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVQLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +L G+  ++     +LT IG S  + +++ +  +  M          +   +++   L 
Sbjct: 915  ASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLEAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATVLAI 1018


>gi|261363703|ref|ZP_05976586.1| protein-export membrane protein SecF [Neisseria mucosa ATCC 25996]
 gi|288568259|gb|EFC89819.1| protein-export membrane protein SecF [Neisseria mucosa ATCC 25996]
          Length = 311

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 164/298 (55%), Gaps = 3/298 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS++  I ++  L T GLN+ ++F GG  + V   + VD
Sbjct: 1   MELFKIKRDIPFMSYGKLTTFISLVTFIAAVFFLVTKGLNFSVEFTGGTVMEVQYQQGVD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++  R  L++L++GD+  Q     K+ ++RL  + G + AQ  +   V   + +  P  T
Sbjct: 61  VNKTREKLDTLKMGDVQVQALGTNKHIMIRLPNKEGVTSAQ--LSNQVMDLLKKEQPDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP++  EL+  G++ +      ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 119 LRQVEFIGPQVGEELVTNGLMALGFVVAGIIIYLSMRFEWRFAVSAIIANMHDIVIILGC 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769
           FA F  EF+LT +A +L ++GYSVN+ VVV+DR+R+N +  +    +   +ID +I  T+
Sbjct: 179 FAFFQWEFSLTVLAGILAVLGYSVNESVVVFDRIRENFRKPSMRGHTVPQVIDNAITATM 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            R++ T  +    V+ M V+GG+ +  F++ +  GIV    SS+ +A+P+LL     R
Sbjct: 239 SRTIITHGSTEAMVVSMLVFGGAALHGFSMALTIGIVFGIYSSVLVASPLLLMFGLSR 296


>gi|92114953|ref|YP_574881.1| protein translocase subunit secF [Chromohalobacter salexigens DSM
           3043]
 gi|91798043|gb|ABE60182.1| protein translocase subunit secF [Chromohalobacter salexigens DSM
           3043]
          Length = 302

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 91/292 (31%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              + FM  R     +S+L ++ ++  L   GLN G+DF GG  + V   +  +L  +R 
Sbjct: 1   MRQLDFMGKRRIAFIVSVLITVIAVGALAFKGLNLGLDFTGGTLVEVRYQQAPELDELRG 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            LES    D+  Q F    + LVRLQ           V + V   +        +   E 
Sbjct: 61  QLESAGFEDVQVQTFGATNDILVRLQ-----QTFDNEVGQQVVDILNTDANQVQLVRAEF 115

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG ++  +L  +  +G++++   +++Y+  RF++ FA GA+  L  D+   LG FAL G+
Sbjct: 116 VGAQVGDQLRDQSGLGMLLALAVVMVYVAFRFQYKFAFGALVALGHDVVIVLGIFALLGL 175

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           +F+LT +AAVL +IGYS+ND ++VYDR+R+N++  +       + +++IN+TL R++ TS
Sbjct: 176 DFDLTVLAAVLAVIGYSLNDTIIVYDRIRENIRR-SQIDDMPQIFNEAINQTLARTMATS 234

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +L +   GG +I +F+I +  GIV    SS++++A +LL +   R 
Sbjct: 235 GTTLLVLLALFFLGGDMIHNFSIALILGIVAGTFSSVYVSAALLLVVKLERK 286


>gi|11071584|emb|CAC14595.1| putative RND protein [Stenotrophomonas maltophilia]
          Length = 1040

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 78/702 (11%), Positives = 185/702 (26%), Gaps = 42/702 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  +  +P+  P                      
Sbjct: 8   RPIFAWVIAIIIMLAGGLALF-----KLPVSMYPNVAPPAVE---------ISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L        +        ITL+F      +    +V   LQ 
Sbjct: 54  AKVVEDSVTQIIEQNMKGLDGLIYFSSNSSSNGQATITLTFESGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +       +     A + +  +    +D++       
Sbjct: 114 AMPLLPQEVQRQGINVAKSSSGFLNAIAFVSENGSMDANDIADYVGSNVVDRLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     +  +++      N        G            
Sbjct: 174 NIQVFG-GKYAMRIWLDPNKLHTYGLSVPEVTAAIKAQNAQVAIGQLGGAPSVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +           
Sbjct: 233 TINAQSRL-------------QTPEQFRNIIVRGAQDGAELRLGDVARVELGAESYDFVT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +    +     +   T          ++          +          S   
Sbjct: 280 RYNGQPASGLAVTLATGANALDTAAGVDAALEDMKGFFPAGLKAEIPYDTTPFVRVSIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L++LG ++ + ++  +V
Sbjct: 340 VVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAMLGFSVNMLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMGQITGALVGIGLVLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+ T+  ++ +S+  AI +  A+   +++  K     +          + 
Sbjct: 460 SGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLKKGEHHVAHRGLAGRFFNG 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R        S  +      ++       GI     + +GVL  R     +   +
Sbjct: 520 FNRGFDR-------TSESYQRGVRGIIHRPWRFMGIVAALFVLMGVLFVRLPSSFLPNED 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK--ITEIVPLSTIQNTE 655
              L     +      E+        +      +   ++ V      +            
Sbjct: 573 QGVLMALVQAPVGATQERTLESIAALENHFLQNEKDAVDSVFSVQGFSFAGMGQNAGMAF 632

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           +     S      G++ +   A+A L  I   F + F   AI
Sbjct: 633 VKLKDWSERDADNGVMPITGRAMAALGQIKDAFIFAFPPPAI 674



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  D   +      + L        +++     ++   + +    P     
Sbjct: 264 DVARVELGAESYDFVTRYNGQPASGLAVTLATGANALDTAAGVDAALEDMKGFFPAGLKA 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     R  I+  +  +I + + + + +++  + +   L     + + +  T G  
Sbjct: 324 EIPYDTTPFVRVSIKGVVQTLIEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+  + A++  IG  V+D +VV + +     +    +S  +   KS+ +  G 
Sbjct: 384 AMLGFSVNMLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATRKSMGQITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V   +      +PMA   GS       F+  +   + ++   +I +   +   +     
Sbjct: 442 LVGIGLVLSAVFVPMAFMSGSTGVIYRQFSATIVSAMALSVLVAIVLTPALCATMLKPLK 501

Query: 829 K 829
           K
Sbjct: 502 K 502



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 78/245 (31%), Gaps = 13/245 (5%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 +      +       V  S   +         +   N                  
Sbjct: 781  FRMVPEDFDLWSVKNDKGEMVPFSAFATKHWDYGSPRLERYNGVSAMEIQGEPAPGVASG 840

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + ++ K+         T  + +         L+        +S + + + +   +
Sbjct: 841  DAMAEIEQLAKQLPAGFGIEWTAMSYQERQAGSQTPLLYT------LSLMIVFLCLAAMY 894

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +    L I   +      G+E ++    A+LT +G +  + +++ +  ++N
Sbjct: 895  ESWSVPTAVLLAAPLGILGAVLANTFKGLERDIYFQVAMLTTVGLTSKNAILIVEFAKEN 954

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +       S  + I  ++ + L   V TS+A  + V+P+A+    G     +    +  G
Sbjct: 955  L---EKGASLIESIMHAVRDRLRPIVMTSLAFGMGVVPLAISTGAGSGAKQAIGTGVLGG 1011

Query: 805  IVVAA 809
            ++V  
Sbjct: 1012 MIVGT 1016


>gi|56414370|ref|YP_151445.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|56128627|gb|AAV78133.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
          Length = 1049

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/686 (9%), Positives = 174/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  + ++P+                        +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIF-----KLPVAQYPTIALPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L +   T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        I           
Sbjct: 233 SIIAQTRLTSTD-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +     P    +           S   
Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRL 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + +   I+    +   +         + +G     V   
Sbjct: 520 FDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++           ++    +  
Sbjct: 640 EKNKVEAITQRATAAFSQIKDAMVFA 665



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|260548975|ref|ZP_05823197.1| multidrug efflux protein AdeJ [Acinetobacter sp. RUH2624]
 gi|260408143|gb|EEX01614.1| multidrug efflux protein AdeJ [Acinetobacter sp. RUH2624]
          Length = 1058

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 65/554 (11%), Positives = 153/554 (27%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGVDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNSLSDSDIKDYVNSSIKEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N+       G        
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 VLNATVNAQSLL-------------QTPEQFRNIFLKNTASGAEVRLKDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        + LR        + +          
Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTAAAVEQRLSELRKNYPAGLQDKLAYDTTPFIRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     ++ +    +      +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEDHTDPVTATSRSMQQISGALVGITSVLTAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A++   A+   I++         N +   F 
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                    M   +
Sbjct: 516 RSFNNGFDRMSHSY 529



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +        L        +++     +E    ++ +  P 
Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAGGLAIKIATGANALDTAAAVEQRLSELRKNYPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I   +  +I + I + I +++  + W   +     + + +  T
Sbjct: 320 GLQDKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N   + A++  IG  V+D +VV + +     +            +S+ +
Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEDHTDPVTATSRSMQQ 437

Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G  V  TS+      +PMA +GG   VI   F+I +   +V++   ++     +   I
Sbjct: 438 ISGALVGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496

Query: 824 YDWRAKNA 831
                 N 
Sbjct: 497 LKQHDPNK 504



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 15/223 (6%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                   S    + +E +  K+  +           +  +      +   +  +   I  
Sbjct: 831  TPAPGVSSGDAMKAMEEIIGKLPSMGLQGFDYEWTGLSLEERESGAQAPFLYALSLLIVF 890

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF--------NLTAVAAVLTLIGY 732
            L    +   W      +  + L +   +      G+          N+    A++ +IG 
Sbjct: 891  LCLAALYESWSIPFSVLLVVPLGVIGAI-VLTYLGMIIKGDPNLSNNIYFQVAIIAVIGL 949

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +  ++   L        D    +    L   + T++A    VLP+A+    
Sbjct: 950  SAKNAILIVEFAKE---LQEKGEDLLDATLHAAKMRLRPIIMTTLAFGFGVLPLALSTGA 1006

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     S    +  G++ A    IF      ++I        +
Sbjct: 1007 GAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSIFKYKPK 1049


>gi|146387262|pdb|2HQD|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
           Of The Putative Proton Relay Pathway
          Length = 1053

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 179/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD+ I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDAAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 81/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+  +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDAAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|325496500|gb|EGC94359.1| aminoglycoside/multidrug efflux system [Escherichia fergusonii
           ECD227]
          Length = 1037

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 66/681 (9%), Positives = 172/681 (25%), Gaps = 47/681 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +IC  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILICLTGTLAIF-----SLPVEQYPELSPP-------------NVRISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TL+F      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLTFEAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSALRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G        
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSIPQQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRAITLRVNQDGSEVKLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           V          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L     ++   ++
Sbjct: 336 SIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLYAFDYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINP 527
           + FFGG      R F+IT+  ++++S+  A+ +  A+   I++          K      
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATILKPLHKGEQHGQKGFFGWF 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
              F    D       +     +   +++ +    ++               +     + 
Sbjct: 516 NRVFNRNADRYERGVAKILHRSLRWLLIYLLLIGGMVVLFMRLPSSFLPQEDRGMFTTSV 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            +     +     +      +     + N +              + +  +  ++ +   
Sbjct: 576 QLPSGSTQQQTLKVVEQVEKYFFTHEKDNIMSVFATVGSGPGGNGQNVARMFVRLKDWDE 635

Query: 648 LSTIQNTEIVGPKISRELIRK 668
                 +       + +  +K
Sbjct: 636 RDPKTGSVFAIIDRATQAFKK 656



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 83/235 (35%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  + +     ++ +  P 
Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  +     L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 F    N   + A++  IG  V+D +VV + +     +    +S R    KS+ +
Sbjct: 380 FAVLYAFDYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRAATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 80/269 (29%), Gaps = 13/269 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  D      +       V  S   ++        +   N       +         
Sbjct: 776  PYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAARGVST 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   +  +V +         T  + +              +  +  S + + + +   
Sbjct: 836  GTAMEIMENLVHQLPGGFGLEWTAMSYQERLSGAQAP----ALYAI--SLLVIFLCLAAL 889

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      +  + L +   L    + G+E ++     +LT+IG +  + +++ +    
Sbjct: 890  YESWSVPFSVMLVVPLGVVGALLATWMRGLENDVYFKVGLLTVIGLAAKNAILIVEFAND 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
               +        +    +  + L   + TS+A    VLPMA+    G +   +    +  
Sbjct: 950  ---MNQKGHDLLEATLHACRQRLRPILMTSLAFIFGVLPMAISNGAGSASQHAVGTGVMG 1006

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G++ A   +I+      + +        R
Sbjct: 1007 GMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|238918974|ref|YP_002932488.1| preprotein translocase subunit SecD [Edwardsiella ictaluri 93-146]
 gi|238868542|gb|ACR68253.1| protein-export membrane protein SecD, putative [Edwardsiella
           ictaluri 93-146]
          Length = 607

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 159/527 (30%), Positives = 284/527 (53%), Gaps = 43/527 (8%)

Query: 30  SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H +++VD D  ++   +   D LRS L+ +GI
Sbjct: 93  NLAPATPKWLAMVGAEPMKLGLDLRGGVHFLMQVDMDTALSKLQEQTMDTLRSDLRDKGI 152

Query: 87  GVFSMR----QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
              ++R         + ++F D+  ++  +D ++   +             +     +  
Sbjct: 153 PYSTIRKLPDPASGGVEINFRDAAARDAASDYLSPRHR-----------DLVFSNVGDTM 201

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           +  V++ + + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R 
Sbjct: 202 LKAVMTDDRLREAREYAVQQNINILRNRVNQLGVAEPLVQRQGADRIVVELPGIQDTARA 261

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGA 257
           +++LG TA + F  V  N   +    G            DG   ++  +V ++G H+  +
Sbjct: 262 KEILGATATLEFRLVNSNVDAQAAASGRVPGDSEVKYTRDGRPVVLYKRVILTGDHITDS 321

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP----------- 306
           T++   + ++P V+IS D  G       T+DNIGKP+A +      +             
Sbjct: 322 TSS-QDEFNRPQVNISLDSAGGSAMSNFTKDNIGKPMATLFVEYKDSGKKDASGKPILEK 380

Query: 307 -------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  
Sbjct: 381 QEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQ 440

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIA 418
           +I +G  A + GL+  ++FM+V Y K+GL+A  ++  N+++ + ++SLL  ATLT+P IA
Sbjct: 441 NIEQGLEACLWGLIASIIFMVVFYKKFGLIATTALLANLVMIVGIMSLLPGATLTMPGIA 500

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GIVL + +AVD+N+L+NERI+EE R  ++V  ++  G+  A+S+I D+N+T LI  V+L+
Sbjct: 501 GIVLTLAVAVDANVLINERIKEELRNGRTVQQAIHEGYKGAFSSIIDANVTTLITAVILY 560

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             G G+++GFAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 561 AVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLLYGGKRINKLSI 607



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     ++ + +        N    ++ L       G           +  +   
Sbjct: 361 FVEYKDSGKKDASGKPILEKQEEVINVATIQSRLGNSFRITGIDNPAEARQLSLLLRAGA 420

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA +I++ + +K  F L A T L+ ++
Sbjct: 421 LIAPIQIVEERTIGPTLGMQNIEQGLEACLWGLIASIIFMVVFYK-KFGLIATTALLANL 479

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      + +  I +
Sbjct: 480 VMIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRTVQQAIHE 536

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    +  ++   I+ + +   G   I  FAI  A G+  +  ++I     I+  +
Sbjct: 537 GYKGAFSSIIDANVTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLL 596

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 597 YGGKRINK 604


>gi|156932978|ref|YP_001436894.1| aminoglycoside/multidrug efflux system [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156531232|gb|ABU76058.1| hypothetical protein ESA_00781 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1038

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +IC  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILICLTGTLAIF-----SLPVEQYPELAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TL+F      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLNFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     + +   
Sbjct: 110 QLQSALRKLPQAVQTQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQEPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     TTA +       N+       G     D+ 
Sbjct: 170 NGVGDIDAYGSQ-YAMRIWLDPDKLTSFQLTTADVVAAIKSQNSQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRAITLRVNQDGSTVTLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           V          
Sbjct: 276 DYLSRYNGKAASGLGVKLASGANEMATAQLVLNRLDELSHYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SITDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYSFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSDEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +                   
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLLKPLKKGEHHGSRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W +  ++L        L         + +G     V
Sbjct: 516 NRTFERSALRYESAVGKILQRSLRWILLYALLLGGMVFLFLRLPTSFLPQEDRGMFITSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++ ++      +  +    F        G+     R+   +     
Sbjct: 576 QLPSGSTQQQTLKVVQQVERYFFEKEKANVASVFATVGSGPGGNGQNVARMFVRLNPWED 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         +  R +    +  
Sbjct: 636 RDPDTGSADAIIERATQAFRHIKEARVFA 664



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 88/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +  D   +      + L        + +A  +++     +++   
Sbjct: 258 STVTLGDVATVEMGAEKYDYLSRYNGKAASGLGVKLASGANEMATAQLVLNRLDELSHYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I   +  ++ +   + + +++  + +   L     + + + 
Sbjct: 318 PHGLEYKVAYETTSFVKASITDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T      FG   N   + A++  IG  V+D +VV + +     +    +S R    KS+
Sbjct: 378 GTFAVLYSFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSDEGLSPRAATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 LLKPLKK 502



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E         L       +  +S + + + +   ++ W      +  + L +   L 
Sbjct: 853  FGLEWTAMSYQERLSGSQAPALYALSLLVVFLCLAALYESWTVPFSVMLVVPLGVIGALL 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               L G+E ++     +LT+IG S  + +++ +   +   + +           +  + L
Sbjct: 913  ATWLRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNSKGHELIAATLDACRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA     G +   +    +  G++ A   ++F      + I   
Sbjct: 970  RPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVMGGMISATLLAVFFVPLFFVLIRRR 1029


>gi|188533224|ref|YP_001907021.1| aminoglycoside/multidrug efflux system [Erwinia tasmaniensis
           Et1/99]
 gi|188028266|emb|CAO96124.1| (Acriflavine resistance protein B) same #2469 [Erwinia tasmaniensis
           Et1/99]
          Length = 1037

 Score =  199 bits (504), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 79/689 (11%), Positives = 185/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  +        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGGLAIV-----SLPIEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TL+F      +    +V  
Sbjct: 50  PGASAETLENTVTQVIEQNMTGIDNLMYMSSQSSNTGQATVTLTFEAGTNPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D +   +      + +I++             + S  +     D +   
Sbjct: 110 QLQTAMRKLPQDVQSQGVTVNKTGDTNILMVAFVSTDGSMDRQDISDYVASHLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP +L     TT ++       N+       G      S 
Sbjct: 170 NGVGQVDAYGSQ-YAMRIWLDPDKLIDYALTTTEVVDAIKSQNSQIAVGQLGGLPSVPSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      I       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRAITLRVNTDGSVVTLGQVARIELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T          L           +          
Sbjct: 276 DYLSRYNGMDASGLGIKLASGANELQTDTLVRARLDELSRFFPHGLKAEIAFETSPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + +  T  +L   G ++   ++
Sbjct: 336 SIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMTEEGLSPRDATRKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCSTLLKPLAQGSHHGRRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +     +   W +    L  + ++  +   G    ++ +G     V
Sbjct: 516 NRMFNHNAERYKDGVGKMLAKGGRWLLVYLALIGVMALLFIRLPGSFLPLEDRGIFTTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L      +E ++   ++ +  +    F        G+     R+   +K    
Sbjct: 576 QLPPGSTLQQTMKVVEKVEHYYLTHEQNNVLSVFATVGAGPGGNGQNVARLFVRLKDWQD 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                ++         +  R +    +V 
Sbjct: 636 RHGSDNSSFAIIERATRAFRSINEAKVVA 664



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 86/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +    + + L        + +    ++     +++   P 
Sbjct: 260 VTLGQVARIELGAEKYDYLSRYNGMDASGLGIKLASGANELQTDTLVRARLDELSRFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +  + + + + +++  + +   L     + + +  T
Sbjct: 320 GLKAEIAFETSPFVKASIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N   + A++  IG  V+D +VV + +     +    +S RD   KS+ +
Sbjct: 380 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPRDATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F++ +   +V++   ++ +   +
Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPAL 492



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 53/444 (11%), Positives = 129/444 (29%), Gaps = 18/444 (4%)

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
              L      + S+   V         N+       ++ +       S      RA     
Sbjct: 596  YYLTHEQNNVLSVFATVGAGPGGNGQNVARLFVRLKDWQDRHGSDNSSFAIIERATRAFR 655

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              N   ++A+      G G   GF + +  +  +     +S    ++    +   +  + 
Sbjct: 656  SINEAKVVASSPAAITGLGNSAGFDMELQDNAGLGHRALMSARNTLLDMAQKNPSLTRVR 715

Query: 525  INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN--------YGIDFK 576
             N L     +   I  +  +A    +              + +           Y     
Sbjct: 716  HNGLDDSSQLRIDIDQRKAQALGISLDDINATLQTGWGSSYVNDFLDRGRVKKVYVQADA 775

Query: 577  GGIQLGVLANRPV--DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                L    ++    + S       +         +   E+          G+S      
Sbjct: 776  PFRMLPDDISKWYVRNDSGGMVPFTAFARSHWESGSPRLERYNGYSALEIVGESATGVSN 835

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYF 692
               +      +  L    + +  G  +   +       +  +S + + + +   ++ W  
Sbjct: 836  GAAMDVMEKLVAQLPVGISLQWTGASLQERMSGAQAPALYALSLLVVFLCLAALYESWSI 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                +  + L +   L    L G+E ++     +LT+IG S  + +++ +   +   +  
Sbjct: 896  PFSVMLVVPLGVLGALIATWLRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---INA 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                      ++  + L   + TS+A    VLPMA+    G S   +    +  G++ A 
Sbjct: 953  RGQELVAATLEASRQRLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTGVLGGMISAT 1012

Query: 810  SSSIFIAAPILLFIYDWRAKNARI 833
              ++F      + +        +I
Sbjct: 1013 VLAVFFVPLFFVMVRRRFPLKDKI 1036


>gi|283479341|emb|CAY75257.1| Protein-export membrane protein secD [Erwinia pyrifoliae DSM 12163]
          Length = 615

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 157/518 (30%), Positives = 277/518 (53%), Gaps = 37/518 (7%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + + +    + LGLDLRGG H ++EVD D  +        D LRS L+++ I   ++R
Sbjct: 110 PAWLAMLSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYVNVR 169

Query: 93  QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +  N  + + F D + ++     +    +             ++  +    ++ V+S   
Sbjct: 170 KTANYGMEIRFRDDKARDEAVSYLITRHR-----------DMVINGSGSNALTAVMSDER 218

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++LG TA 
Sbjct: 219 MREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATAT 278

Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  +        G            D    ++  +V ++G H+  +T++ D    
Sbjct: 279 LEFRLVNTSVDATAAANGRVPGDSEVKNTRDKQPVVLYKRVILTGDHITDSTSSNDEYN- 337

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
           +P V+IS D  G       T+D++GK +A +      +                      
Sbjct: 338 QPQVNISLDSAGGNIMSNFTKDSVGKAMATLFVEYKDSGKKDANGRAILEKHEEVINVAN 397

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  +G+ +I +G  A 
Sbjct: 398 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEAC 457

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GL+  ++FM+V Y K+GLVA  ++  N++L + ++SLL  ATLT+P IAGIVL + +A
Sbjct: 458 LWGLIASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA 517

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  ++L+  G G+++G
Sbjct: 518 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 577

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 578 FAITTAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI 615



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 96/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++        N    ++ L       G +         +  +   
Sbjct: 369 FVEYKDSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 428

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++ + +K  F L A + L+ ++
Sbjct: 429 LIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK-KFGLVATSALLANL 487

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +
Sbjct: 488 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 544

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    V  ++   I V+ +   G   I  FAI  A G+  +  ++I     I+  +
Sbjct: 545 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLM 604

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 605 YGGKRINK 612


>gi|260598855|ref|YP_003211426.1| aminoglycoside/multidrug efflux system [Cronobacter turicensis
           z3032]
 gi|260218032|emb|CBA32733.1| Probable aminoglycoside efflux pump [Cronobacter turicensis z3032]
          Length = 1038

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 175/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +IC  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILICLTGTLAIF-----SLPVEQYPELAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TL+F      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLNFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     + +   
Sbjct: 110 QLQSALRKLPQAVQTQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQEPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     TTA +       N+       G     D+ 
Sbjct: 170 NGVGDIDAYGSQ-YAMRIWLDPDKLTSFQLTTADVVAAIKSQNSQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRAITLRVNQDGSTVTLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           V          
Sbjct: 276 DYLSRYNGKAASGLGVKLASGANEMATAQLVLNRLDELSHYFPHGLEYKVAYETTSFVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SITDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYSFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +                   
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLLKPLKKGEHHGSRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W +  ++L        L         + +G     V
Sbjct: 516 NRTFERSALRYESAVGKILQRSVRWILLYALLLGGMVFLFLRLPTSFLPQEDRGMFVTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++ ++      +  +    F        G+     R+   +     
Sbjct: 576 QLPSGSTQQQTLKVVQQVERYFFEKEKANVASVFATVGSGPGGNGQNVARMFVRLNPWED 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +            R +    +  
Sbjct: 636 RDPDTGSADAIIERATAAFRHIKEARVFA 664



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 87/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +  D   +      + L        + +A  +++     +++   
Sbjct: 258 STVTLGDVATVEMGAEKYDYLSRYNGKAASGLGVKLASGANEMATAQLVLNRLDELSHYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I   +  ++ +   + + +++  + +   L     + + + 
Sbjct: 318 PHGLEYKVAYETTSFVEASITDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T      FG   N   + A++  IG  V+D +VV + +     +    +S R    KS+
Sbjct: 378 GTFAVLYSFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRAATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 LLKPLKK 502



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E         L       +  +S + + + +   ++ W      +  + L +   L 
Sbjct: 853  FGLEWTAMSYQERLSGSQAPALYALSLLVVFLCLAALYESWTVPFSVMLVVPLGVIGALL 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               L G+E ++     +LT+IG S  + +++ +   +   + +           +  + L
Sbjct: 913  ATWLRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNSKGHELIAATLDACRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA     G +   +    +  G++ A   +IF      + I   
Sbjct: 970  RPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVMGGMISATLLAIFFVPLFFVLIRRR 1029


>gi|17227616|ref|NP_484164.1| preprotein translocase subunit SecF [Nostoc sp. PCC 7120]
 gi|17135098|dbj|BAB77644.1| protein-export membrane protein [Nostoc sp. PCC 7120]
          Length = 325

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 81/311 (26%), Positives = 150/311 (48%), Gaps = 22/311 (7%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-------------- 583
           + +   ++R     IS +F +  +  +     N  I       L                
Sbjct: 1   MKLSINKSRSLWWIISSVFILIGLISMVISWQNPDIRAPLRPSLDFIGGTRLQFERDCTK 60

Query: 584 --LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               ++P+D++VVR   ++  +GD S Q     +            ++ + +   +    
Sbjct: 61  PGNCDQPIDINVVREVAKAQGLGDSSIQIITDRETGAENGISIRTKTLEREQRTNLQNAL 120

Query: 642 ITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             +I          + VGP + REL   G++ +I+S + ++IY+  RF+  +AL AI  L
Sbjct: 121 SEKIGSFDEQKNQFDTVGPTLGRELFTSGMIALIVSFVGIIIYLNFRFQLDYALFAIIAL 180

Query: 701 ILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             D+  T G F++FG+    E +   + A+LT+ G+SVND VV+YDR+R+ +KL      
Sbjct: 181 FHDVLITAGIFSIFGLVFGTEVDSLFIVALLTITGFSVNDTVVIYDRIRETLKLDPNR-P 239

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             D++D ++N+TLGRS+ T++   + +  + ++GG  + +FA+ + FG +  A SSIFIA
Sbjct: 240 IADIVDDAVNQTLGRSINTTLTTMLPLFAIYLFGGETLKNFALALIFGFLAGAYSSIFIA 299

Query: 817 APILLFIYDWR 827
           + +L    +  
Sbjct: 300 STLLTLWRERN 310


>gi|323944685|gb|EGB40752.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H120]
          Length = 618

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/627 (11%), Positives = 163/627 (25%), Gaps = 51/627 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDDLAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQN 610
                         +E ++    + + 
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHRK 602



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 87/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++      + +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDDLAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502


>gi|226951594|ref|ZP_03822058.1| acridine efflux pump [Acinetobacter sp. ATCC 27244]
 gi|294651254|ref|ZP_06728581.1| RND superfamily drug:proton (H+) antiporter [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226837653|gb|EEH70036.1| acridine efflux pump [Acinetobacter sp. ATCC 27244]
 gi|292822849|gb|EFF81725.1| RND superfamily drug:proton (H+) antiporter [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 1058

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 148/552 (26%), Gaps = 41/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LSKMPIAQYPTIAPPT-------------VTISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGLDGLRYISSNSSGNGQASIELNFEQGIDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + I   
Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVLAFYSPDNSMSDSDIKDYVNSSIKEPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N+       G        
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTNYQLTPSDVARALQAQNSQVAVGQLGGAPAVKDQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 VINATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDTY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +   T          LR        + +          
Sbjct: 276 AFNSMFNGKPAGGLAIKMATGSNALDTAAAVEERLTELRKNYPAGLEDKLAYDTTPFIKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   +I + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAIPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF----CSLDMGFSRAYSTIFDSNITALIA 473
             +VL IGL VD  I+V E +     +  +             S A   I        + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMTEEHTDPVTSTEKSMKQISGALIGITSVLSAVFVP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
                   G   R F+IT+  ++++S+  A++   A+   +++         N +   F 
Sbjct: 456 MAFFSGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATLLKQHDPNKAPSNSIFARFF 515

Query: 534 IPDCIAIQFMRA 545
                +   +  
Sbjct: 516 RWFNHSFDRVSH 527



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 84/248 (33%), Gaps = 8/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V            +          L        +++     +E    ++ +  P 
Sbjct: 260 VRLKDVARVELGSDTYAFNSMFNGKPAGGLAIKMATGSNALDTAAAVEERLTELRKNYPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +I + I + I +++  + W   +     + + +  T
Sbjct: 320 GLEDKLAYDTTPFIKLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAIPVVVLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N   + A++  IG  V+D +VV + +     +           +KS+ +
Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMTEEHTDPVTSTEKSMKQ 437

Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G  +  TS+ +    +PMA + G   VI   F+I +   +V++   ++     +   +
Sbjct: 438 ISGALIGITSVLS-AVFVPMAFFSGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATL 496

Query: 824 YDWRAKNA 831
                 N 
Sbjct: 497 LKQHDPNK 504



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 68/223 (30%), Gaps = 15/223 (6%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                   S    + +E +  K+  +           +  +      +   +  +   I  
Sbjct: 831  TPAPGTSSGDSMKAMEEIIAKLPSMGLQGFDYEWTGLSLEERESGAQAPFLYALSLLIVF 890

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF--------NLTAVAAVLTLIGY 732
            L    +   W      +  + L I   +     FG+          N+    A++ +IG 
Sbjct: 891  LCLAALYESWSIPFSVLLVVPLGIIGAI-LLTYFGMVLKDDPNLSNNIYFQVAIIAVIGL 949

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +  +    L        +    +    L   + T++A    VLP+A+    
Sbjct: 950  SAKNAILIVEFAKD---LQEQGEELLEATLHAAKMRLRPIIMTTLAFGFGVLPLALSSGA 1006

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G     S    +  G++ +    IF      ++I        +
Sbjct: 1007 GAGSQHSVGYGVLGGVLSSTLLGIFFIPVFFVWIRSIFKYKPK 1049


>gi|75907711|ref|YP_322007.1| preprotein translocase subunit SecF [Anabaena variabilis ATCC
           29413]
 gi|75701436|gb|ABA21112.1| protein translocase subunit secF [Anabaena variabilis ATCC 29413]
          Length = 325

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/310 (25%), Positives = 148/310 (47%), Gaps = 22/310 (7%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-------------- 583
           + +   ++R     +S + ++  +  +     N  I       L                
Sbjct: 1   MKLSINKSRSLWWILSSVITLVGLISMLISWQNPDIRAPLRPSLDFIGGTRLQFERDCTK 60

Query: 584 --LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               ++P+D++VVR   ++  +GD S Q     +            ++ +     +    
Sbjct: 61  PGNCDQPIDINVVREVAKAQGLGDSSIQIVTDRETGAENGISIRTKTLEREERTNLQNAL 120

Query: 642 ITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             +I          + VGP + REL   G++ +I+S   ++IY+  RF+  +A+ AI  L
Sbjct: 121 SEKIGSFDEQKNQFDTVGPTLGRELFTSGMIALIVSFAGIVIYLNFRFQLDYAVFAIIAL 180

Query: 701 ILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             D+  T G F++FG+    E +   + A+LT+ G+SVND VV+YDR+R+ +KL      
Sbjct: 181 FHDVLITAGIFSIFGLVFGTEVDSLFIVALLTITGFSVNDTVVIYDRIRETLKLEPNR-P 239

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             D++D ++N+TLGRS+ T++   + +  + ++GG  + +FA+ + FG +  A SSIFIA
Sbjct: 240 IADIVDDAVNQTLGRSINTTLTTMLPLFAIYLFGGETLKNFALALIFGFLAGAYSSIFIA 299

Query: 817 APILLFIYDW 826
           + +L    + 
Sbjct: 300 STLLTLWRER 309


>gi|57238795|ref|YP_179931.1| preprotein translocase subunit SecF [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58578721|ref|YP_196933.1| preprotein translocase subunit SecF [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57160874|emb|CAH57776.1| protein-export membrane protein SecF [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58417347|emb|CAI26551.1| Protein-export membrane protein SECF [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 289

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 101/283 (35%), Positives = 163/283 (57%), Gaps = 3/283 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           I + F R R + +  S L  I S+ L+   G+ +G DF GGI + +  N+ VD+  +   
Sbjct: 7   INVDFFRYRVYAISCSSLLVILSVLLVLFKGICFGTDFAGGIIIELRVNQ-VDIKDINLK 65

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+       S Q+F    N  + ++++   ++ +T  +E +K+ + EI+   T    + V
Sbjct: 66  LQERGFVGFSVQSF-NNNNKELMIRFKNEQNLGKTDSIEKIKEILKEILGDVTYLKIDYV 124

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  + I +GI  ++ S + M +Y+WIRF+W FALG I  L+ D+  TLG  +L GIE
Sbjct: 125 GPQVGYKQIFEGIYAILFSLLGMFLYLWIRFQWRFALGGIIALLHDVVLTLGLISLLGIE 184

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNL++ AA+LT+IGYSVND VV+YDR+R+ ++         ++I+ SIN TL R++ TS 
Sbjct: 185 FNLSSTAAILTVIGYSVNDSVVIYDRIRELLRKMLKEK-ITEIINISINATLSRTILTSG 243

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              I+ +P+ +     +   +I + FGI V   SSIFIA   L
Sbjct: 244 TTMIAAIPLMLLCSGTVRDLSIIIFFGIAVGTYSSIFIATTSL 286


>gi|115524912|ref|YP_781823.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris
           BisA53]
 gi|115518859|gb|ABJ06843.1| protein translocase subunit secF [Rhodopseudomonas palustris
           BisA53]
          Length = 334

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 118/334 (35%), Positives = 197/334 (58%), Gaps = 17/334 (5%)

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
             + ++    A+ +   ++  +     ++ +            D     F R R     I
Sbjct: 1   MTNWILLGLGALVVALTVVSVLGLLPSLRIVP-----------DDTHFDFTRFRRISFPI 49

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRSNLESLQIGDISFQNF 611
           S L SI +I L FTHGLN+GIDFKGG  L V +   P D++ +R+ L  L +GD+  Q F
Sbjct: 50  SALLSIAAIVLFFTHGLNFGIDFKGGTLLEVQSKSGPADIASMRTTLSGLGLGDVQLQQF 109

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            G  + L+R+  QPG   AQ   ++ V++ +         +  E+VGP++S EL+  G++
Sbjct: 110 GGPADVLIRVAEQPGGDAAQQVAVQKVRQAL---GEAVEYRRVEVVGPRVSSELLAYGML 166

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           G++++   +LIY+W RF+W FALGA+   + DI  T+GF ++  ++F+LT++AA+LT++G
Sbjct: 167 GLMLAIFGILIYLWFRFEWQFALGAMIANVHDIVLTIGFMSVSQVDFDLTSIAALLTILG 226

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           YS+ND VV+YDR+R+ ++ Y   +    L+++SIN TL RS+ T +   +++L + ++GG
Sbjct: 227 YSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLSRSIITHVTVTLALLALLLFGG 285

Query: 792 SVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824
             I SF   M FG ++V   +SIFIAAPIL+++ 
Sbjct: 286 HAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 319


>gi|77457506|ref|YP_347011.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas fluorescens Pf0-1]
 gi|77381509|gb|ABA73022.1| acriflavine resistance protein B [Pseudomonas fluorescens Pf0-1]
          Length = 1054

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/692 (10%), Positives = 185/692 (26%), Gaps = 44/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AISVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++             + S  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLLVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNNFNLTPVDVKTAIAAQNVQVSSGQLGGLPAVQGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++G          
Sbjct: 233 TIIGKTRL-------------QTAEQFKEILLKVNKDGSQVRLKDVADVGLGGENYAISA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L+         +           S   
Sbjct: 280 QFNGSPASGLAVKLANGANALDTAKALRKTIDDLKPFFPQGMEVVFPYDTTPVVTESIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAAGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      + F+IT+  ++ +S+  A+    A+   +            +       +  
Sbjct: 460 GGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKAVPHGEHGTPKKGFFGWFNRG 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +         + +   I+F       L         + +G +   V   
Sbjct: 520 FDRSVKSYERGVGNILRHKAPYLLAYLIIFVGMIWLFLRIPSSFLPEEDQGVLFAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++ ++   +      GE + +  +    G + A       +   + +  
Sbjct: 580 AGSSAQRTQVVVDEMREFLLRPTKDGGEGDAVASVFTVTGFNFAGRGQSSGMAFIMLKPW 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 N+       +++        ++ +  
Sbjct: 640 HERNADNSVFKLAARAQQHFFTFRDAMVFAFA 671



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 68/164 (41%), Gaps = 9/164 (5%)

Query: 674  IISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            + +   +++++    +   W   +  +  + L I   L   +L G+  ++  +  +LT I
Sbjct: 879  LFALSLLMVFLCLAALYESWSIPIAVVLVVPLGIIGALLATSLRGLSNDVYFLVGLLTTI 938

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G +  + +++ +  ++   L+    S RD   ++    L   + TS+A  + V+P+A+  
Sbjct: 939  GLAAKNAILIVEFAKE---LHEQGSSLRDAAIEACRMRLRPIIMTSLAFILGVVPLAIST 995

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G     +    +  G++ A   +IF      + +     +  
Sbjct: 996  GAGSGSQHAIGTVVIGGMITATVLAIFWVPLFFVTVSSMGQRKN 1039



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   IS Q      + L        +++   + L      +    
Sbjct: 258 SQVRLKDVADVGLGGENYAISAQFNGSPASGLAVKLANGANALDTAKALRKTIDDLKPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I+  +  ++ + + + + +++  + +   +    T+ + + 
Sbjct: 318 PQGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFGILAAAGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +
Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPAL 492


>gi|259909286|ref|YP_002649642.1| preprotein translocase subunit SecD [Erwinia pyrifoliae Ep1/96]
 gi|224964908|emb|CAX56431.1| Protein-export membrane protein [Erwinia pyrifoliae Ep1/96]
          Length = 604

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 157/518 (30%), Positives = 277/518 (53%), Gaps = 37/518 (7%)

Query: 33  DRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
             + + +    + LGLDLRGG H ++EVD D  +        D LRS L+++ I   ++R
Sbjct: 99  PAWLAMLSAEPMKLGLDLRGGVHFLMEVDMDTALGKLQDQNIDNLRSDLREKSIPYVNVR 158

Query: 93  QIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +  N  + + F D + ++     +    +             ++  +    ++ V+S   
Sbjct: 159 KTANYGMEIRFRDDKARDEAVSYLITRHR-----------DMVINGSGSNALTAVMSDER 207

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           + +   +A++Q++ I+R R++Q+G++E  +QR GS RI+++LPG QD +R +++LG TA 
Sbjct: 208 MREAREYAVQQNINILRNRVNQLGVAEPLVQRQGSDRIVVELPGIQDTARAKEILGATAT 267

Query: 212 MSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           + F  V  +        G            D    ++  +V ++G H+  +T++ D    
Sbjct: 268 LEFRLVNTSVDATAAANGRVPGDSEVKNTRDKQPVVLYKRVILTGDHITDSTSSNDEYN- 326

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------------VI 308
           +P V+IS D  G       T+D++GK +A +      +                      
Sbjct: 327 QPQVNISLDSAGGNIMSNFTKDSVGKAMATLFVEYKDSGKKDANGRAILEKHEEVINVAN 386

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  +G+ +I +G  A 
Sbjct: 387 IQSRLGNSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTMGAQNITQGLEAC 446

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GL+  ++FM+V Y K+GLVA  ++  N++L + ++SLL  ATLT+P IAGIVL + +A
Sbjct: 447 LWGLIASIVFMVVWYKKFGLVATSALLANLVLIVGIMSLLPGATLTMPGIAGIVLTLAVA 506

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  ++L+  G G+++G
Sbjct: 507 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIVDANVTTLIKVIILYAVGTGSIKG 566

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FAIT  + +  SMFTAI   RA++  +   K++  + I
Sbjct: 567 FAITTAIGVATSMFTAIIGTRAIVNLMYGGKRINKLSI 604



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 96/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     +N  ++        N    ++ L       G +         +  +   
Sbjct: 358 FVEYKDSGKKDANGRAILEKHEEVINVANIQSRLGNSFRITGINNPNEARQLSLLLRAGA 417

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA ++++ + +K  F L A + L+ ++
Sbjct: 418 LIAPIQIVEERTIGPTMGAQNITQGLEACLWGLIASIVFMVVWYK-KFGLVATSALLANL 476

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +
Sbjct: 477 VLIVGIMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 533

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    V  ++   I V+ +   G   I  FAI  A G+  +  ++I     I+  +
Sbjct: 534 GYKGAFSSIVDANVTTLIKVIILYAVGTGSIKGFAITTAIGVATSMFTAIIGTRAIVNLM 593

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 594 YGGKRINK 601


>gi|327394744|dbj|BAK12166.1| probable aminoglycoside efflux pump AcrD [Pantoea ananatis AJ13355]
          Length = 1038

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 186/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  +        ++++P   P              ++ +    
Sbjct: 8   RPIFAWVLAILLCLCGTLAII-----SLPVEQYPDLAPP-------------NVRITATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q +ITL+F      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGIDNLMYMSSNSSNTGQAQITLTFTAGTNPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L    +   +      + +I++          +  + +  +     + +   
Sbjct: 110 QLQSALRQLPQPVQSQGVTVNKTGDSNILMVAFVSTDGSMNKQDIADYVASNIQEPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L     TT  +       N        G     ++ 
Sbjct: 170 DGVGEVDAYGTQ-YAMRIWLDPYKLTAYALTTDDVVNAIKSQNTQVAVGQVGGLPAVNNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 ALNATVNAQAML-------------QTPDQFKAITLKNNPDGSVVTLGDVATVALGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DSLSRYNGQSASGLGIKLASGANEMNTDKLVRARLDELSHYFPHGLEAKIAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV  V+++ +   +  L+   ++ + ++ T  ++   G ++   ++
Sbjct: 336 SITDVVKTLLEAILLVFGVMYLFMQNFRATLIPTIAVPVVLLGTFCVIFAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGISPRAATRKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++++S+  A+ +  A+   +                +  
Sbjct: 456 MAFFGGTVGAIYRQFSVTIVSAMILSVLVAMILTPALCATLLKPIAKGEHHGERGFFRWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +           +A        W +    +  I +   L         + +G I   V
Sbjct: 516 NHHFNRNADRYQRGVAHILRTGGRWLLLYVGIIGIMAFLFLHLPSSFLPQEDRGMILTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  ++   + +  ++   ++ +  +    F        G+     R+   +K    
Sbjct: 576 QLPAGSSMNQTSAVVAKVEKYYLTKEKDNVLSVFSTIGSGPGGNGQNVARLFIRLKDWGD 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K  + +    ++ 
Sbjct: 636 RPGADRTSFAIIKRAGKAFKHINEATVIA 664



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +   +++     +++   P 
Sbjct: 260 VTLGDVATVALGAEKYDSLSRYNGQSASGLGIKLASGANEMNTDKLVRARLDELSHYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + +   +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETTPFVKASITDVVKTLLEAILLVFGVMYLFMQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    IS R    KS+ +
Sbjct: 380 FCVIFAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGISPRAATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +G   G++   F++ +   ++++   ++ +   +   + 
Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTVGAIYRQFSVTIVSAMILSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/543 (10%), Positives = 142/543 (26%), Gaps = 42/543 (7%)

Query: 325  IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV--- 381
            I                   N   +R                 +  G++ I+ F+ +   
Sbjct: 500  IAKGEHHGERGFFRWFNHHFNRNADRYQRGVAHILRTGGRWLLLYVGIIGIMAFLFLHLP 559

Query: 382  --------LYGKWGLVADFSIFLNVILTLAL-----LSLLGATLTLPSIAGIVLGIGLAV 428
                           V   +       +  +       L      + S+   +       
Sbjct: 560  SSFLPQEDRGMILTQVQLPAGSSMNQTSAVVAKVEKYYLTKEKDNVLSVFSTIGSGPGGN 619

Query: 429  DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
              N+       ++         +      RA       N   +IA+      G G+  GF
Sbjct: 620  GQNVARLFIRLKDWGDRPGADRTSFAIIKRAGKAFKHINEATVIASSPPAITGLGSSSGF 679

Query: 489  AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
             +     I          + AM   ++       +              + I     +  
Sbjct: 680  DL----EIQDHGGIGHDKLMAMRDMLLDKASKDKLLSRVRHNGLDDSPQLQIDIDERKAQ 735

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV--------------DLSVV 594
             +G+S+     ++   +          +G ++   +                   + S  
Sbjct: 736  ALGVSLDTINDTLATAWGSSYVNDFLDRGRVKKVYVQADAPYRMLPGDVDKWYVRNSSGT 795

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                 +         +   E+          G++         + +    +  L      
Sbjct: 796  MVPFSAFATSRWQTGSPRLERYNGYSSLEIVGEAAEGVSSGTAMNEMEKLVESLPLGVGF 855

Query: 655  EIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
            +  G      L       + ++S + + + +   ++ W      +  + L +   L    
Sbjct: 856  QWTGASYQERLSGSQAPALYVVSLLVVFLCLAALYESWSIPFSVMLVVPLGVIGALIATW 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              G+E ++     +LT++G S  + +++ +   +   L +      +    +  + L   
Sbjct: 916  TRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---LNSKGGELIESTLAASRQRLRPI 972

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + TS+A    VLPMA+    G     S    +  G++ A   +I       + +      
Sbjct: 973  LMTSLAFIFGVLPMAISSGAGSGSQHSVGTGVMGGMISATILAILFVPLFFVLVRRRFPL 1032

Query: 830  NAR 832
              +
Sbjct: 1033 KEK 1035


>gi|295096742|emb|CBK85832.1| The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile
           Efflux-1 (HAE1) Family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 1048

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/685 (9%), Positives = 174/685 (25%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +          +           S   
Sbjct: 280 KFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFFPSGLKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L++ G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAIFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++ +S+  A+ +  A+   +                   +   
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGGHGEHKGFFGWFNRMF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + +   I+    +   +         + +G          
Sbjct: 520 DKSTHHYTDSVGNILRSTGRYLLLYIIIVVGMAFLFVRLPSSFLPDEDQGVFLSMAQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +    ++ +  + E  F V      G           +K        
Sbjct: 580 GATQERTQKVLDEMTDYFLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            + ++           ++    +  
Sbjct: 640 ENKVEAITGRAMGTFSQIKDAMVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A+FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAIFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMNLMEELASKLPAGVGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|325268060|ref|ZP_08134706.1| protein-export membrane protein SecF [Kingella denitrificans ATCC
           33394]
 gi|324980445|gb|EGC16111.1| protein-export membrane protein SecF [Kingella denitrificans ATCC
           33394]
          Length = 313

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 86/298 (28%), Positives = 150/298 (50%), Gaps = 1/298 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS+   I ++  L T GLN  ++F GG  + V       
Sbjct: 1   MELFKFKRDIPFMSYGKLTTFISLATFILAVFFLLTRGLNLSVEFTGGTLMEVEYASQQG 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             + +   +   +     Q      N  + ++      V+  ++   V + + +  P  +
Sbjct: 61  ADLNQVRHQLDTLKMGEVQVQALGTNKHIMIRLPNKPDVSSAQLSNQVMETLKKQSPDVS 120

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP +  EL+  G+  + +  + ++ Y+ +RF+W FA+ AI   + DI   LG 
Sbjct: 121 LRQVEFIGPAVGDELVSHGLKALGMVIVGIIAYLSMRFEWRFAVSAIIANLHDIVIILGC 180

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769
           FA F  EF+LT +A VL ++GYSVN+ VVV+DR+R+N++  +  S +  ++ID +I  T+
Sbjct: 181 FAFFRWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENLRKGSMRSKTVPEVIDNAITATM 240

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           GR++ T  +    V+ M V+GG+ +  FA  +  GIV    SS+ +A+P+LL     R
Sbjct: 241 GRTIITHGSTEAMVISMLVFGGAALHGFATALTIGIVFGIYSSVLVASPLLLMFGLTR 298


>gi|149914181|ref|ZP_01902712.1| Cation/multidrug efflux pump, RND family protein [Roseobacter sp.
           AzwK-3b]
 gi|149811700|gb|EDM71533.1| Cation/multidrug efflux pump, RND family protein [Roseobacter sp.
           AzwK-3b]
          Length = 1039

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/625 (11%), Positives = 172/625 (27%), Gaps = 45/625 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  IG+L           + ++P   P               + +    
Sbjct: 8   RPVFAWVISILIMGIGILAI-----RTLPVAQYPQIAPP-------------SVTITATY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  V   +    ++  + L        S      +++TL+F      +    +V  
Sbjct: 50  PGASANTVANTVTQVIEQQMTGLDGLRYFSSSSTADGLSEVTLTFETGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L         +++            ++ +  ++   +D++   
Sbjct: 110 KLSQATPLLPETVQRQGLTVEKSSAGFLMVVALISTDGTLEQVDLADYMVSNLVDELSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L     T A +       N       FG R   +  
Sbjct: 170 QGVGSVNVFGGQ-YAMRIWLDPAKLAAFELTPADVVAAVSAQNAQISAGAFGARPTLEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                      +   E             +       
Sbjct: 229 QLNATITAQSLL-------------RTPEDFRQIVLRAETDGGLVLLDDVARVEIGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                  A        +     +   T                     ++          
Sbjct: 276 ATIARFNADPAAGMAITLAPGANALDTASAIKERMEDFSRFFPTGVDYVIPYDTTPFVEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV +V+F+ +   +  L+   ++ + ++ T  +L+  G T+   ++
Sbjct: 336 SIKEVVKTLFEAIGLVFLVMFLFLQNLRATLIPTLAVPVVLLGTFGVLAAAGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475
             +VL IGL VD  I+V E +      +      +      +     I  + + + +   
Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERIMEEEGLPPREATHKSMGQITGALIGIAMVLSAVFVP 455

Query: 476 VLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK----KMKSIDINPLS 529
           + FF G      + FAIT+  ++ +S+  A+++  A+   +++ K    K          
Sbjct: 456 MAFFPGSTGVIYQQFAITIVSAMALSVVVALTLTPALCASLLKPKGHAAKRGPFGWFNSG 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L            R       I   + ++ +        G   +    +     +  
Sbjct: 516 FSGLTNGYTGTVRWSVRRPFRVGIIYLVLAAVMVGLFMRTPTGFLPEEDQGILFTLIQTP 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614
             +     LE ++  +  +   + +
Sbjct: 576 TGATAERTLEVVKQVEDYYLTQEDQ 600



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 80/238 (33%), Gaps = 12/238 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +      +        +        +++     ++   +  +   P 
Sbjct: 260 VLLDDVARVEIGAENYATIARFNADPAAGMAITLAPGANALDTASAIKERMEDFSRFFPT 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I++ +  +  +   + + +++  +     L     + + +  T
Sbjct: 320 GVDYVIPYDTTPFVEISIKEVVKTLFEAIGLVFLVMFLFLQNLRATLIPTLAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKS 764
            G  A  G   N   + A++  IG  V+D +VV    +R+ +        +  R+   KS
Sbjct: 380 FGVLAAAGFTINTLTMLAMVLAIGLLVDDAIVVVENVERIMEE-----EGLPPREATHKS 434

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + +  G  +  +M      +PMA + GS       FAI +   + ++   ++ +   +
Sbjct: 435 MGQITGALIGIAMVLSAVFVPMAFFPGSTGVIYQQFAITIVSAMALSVVVALTLTPAL 492



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 81/263 (30%), Gaps = 14/263 (5%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                   ++   + + V  S             +   N                   A  
Sbjct: 778  PTDIDKWRVRNASGQLVPFSNFAEGRWDYGAQGLYRYNSVPSIQIQGSPATGVTTGEAMA 837

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             +  +V +  T      T  + E         L+        +S  A+ + +   ++ W 
Sbjct: 838  EMERLVSELGTGYSLAWTGLSLEERQSGNQAPLLY------ALSLAAVFLSLAALYESWS 891

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
                 +  + + I   L    L G E  +     +LT+IG +  + +++ +  R     Y
Sbjct: 892  IPFAVMLAMPIGILGALTGAWLGGFENGVFFQVGLLTVIGLTGKNAILIVEFARD---RY 948

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
                   D + ++  +     + TSMA  + VLP+ +  G+  G     +  G++    S
Sbjct: 949  EAGERVIDAVAEAARQRFRPIIMTSMAFSLGVLPLVLSSGAGSGGRN-AIGSGVLAGTLS 1007

Query: 812  SI---FIAAPILLFIYDWRAKNA 831
            +     +  P+   I     +  
Sbjct: 1008 ATILGVVFVPLFFMIVTRLFRRG 1030


>gi|56963331|ref|YP_175062.1| preprotein translocase subunit SecF [Bacillus clausii KSM-K16]
 gi|56909574|dbj|BAD64101.1| preprotein translocase subunit F [Bacillus clausii KSM-K16]
          Length = 311

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/301 (25%), Positives = 146/301 (48%), Gaps = 8/301 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               P+   +   + R      S L  +  I LL T GLN G+DF+ G  + + A++ + 
Sbjct: 1   MSFNPEKWNVDLTKHRKRFFIGSGLSIVLGIVLLLTFGLNLGVDFESGSNVEIQADQTLM 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              +  +  ++           GE++     ++    S  +   ++   +          
Sbjct: 61  QEQLLDDFAAINESYTPNITLGGEQSQSATARFTVELSKDEITAIQTYFQ-----DKYGH 115

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
             N   V P + +EL R  I+ V+I+++ ++IYI  RF + + + A+  L+ D    +  
Sbjct: 116 SPNVSTVSPLVGQELARNAILSVLIASLGIVIYIGFRFHFLYGVSAVIGLLHDAFIIIAL 175

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR---DLIDKSINE 767
           F+LF +E N+  +AAVLT++GYS+ND +V +DRMR+N+       SF     +++KS+ +
Sbjct: 176 FSLFQVEINVPFIAAVLTVVGYSINDTIVTFDRMRENINKEKEIKSFEHLAQIVNKSLLQ 235

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            L RS+ T +    + + + ++GG  I SF++ +  G++    SS+F+ A I L     R
Sbjct: 236 VLTRSINTVLTVLFAAVALLIFGGEAIRSFSLALVIGLIAGTYSSMFLCAQIWLVWEWKR 295

Query: 828 A 828
            
Sbjct: 296 Q 296


>gi|51597081|ref|YP_071272.1| aminoglycoside/multidrug efflux system [Yersinia pseudotuberculosis
           IP 32953]
 gi|153950200|ref|YP_001400248.1| aminoglycoside/multidrug efflux system [Yersinia pseudotuberculosis
           IP 31758]
 gi|170023624|ref|YP_001720129.1| aminoglycoside/multidrug efflux system [Yersinia pseudotuberculosis
           YPIII]
 gi|186896171|ref|YP_001873283.1| aminoglycoside/multidrug efflux system [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590363|emb|CAH22003.1| HAE1 family (RND superfamily) multidrug efflux protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|152961695|gb|ABS49156.1| acriflavine resistance protein D [Yersinia pseudotuberculosis IP
           31758]
 gi|169750158|gb|ACA67676.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           pseudotuberculosis YPIII]
 gi|186699197|gb|ACC89826.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 1043

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       +TL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASVTLTFQAGTNPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  D ++  +  +   + ++++             + S  +     D +   
Sbjct: 110 QLQSAIKRLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDISDYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT+ +       N        G     D+ 
Sbjct: 170 EGVGSVDAFGSQ-YAMRIWLDPNKLTNYQLTTSDIVSAIQSQNTQVAVGQLGGTPAVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEEFREITLRVNQDGSLVTLGDVAKIELGSEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +      A L           +          
Sbjct: 276 DYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPHGLEAKIAYETTPFVQA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGTFAVLSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALIGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  AM   +     +K I          
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATL-----LKPIAPGHHHAKRG 510

Query: 534 IPDCIAIQFMRARFWG 549
                   F R     
Sbjct: 511 FFGWFNRMFDRNSHRY 526



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +   + ++    ++    P 
Sbjct: 260 VTLGDVAKIELGSEKYDYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETTPFVQASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ +
Sbjct: 380 FAVLSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALIGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNNRGKDLVEATLEASRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029


>gi|21243244|ref|NP_642826.1| preprotein translocase subunit SecD [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108777|gb|AAM37362.1| protein-export membrane protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 614

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 143/520 (27%), Positives = 251/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  ++VD+   +   L  +++++R+ L+   I
Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I ++  +    +     +               +  L    + + I++
Sbjct: 163 PYRSVERRADNSIQVNLGEGASADAARVALAK------------AQPTLTYDVSGQNIAV 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L
Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N+      G                  L+  +  ++G  +  AT 
Sbjct: 271 IGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVDATV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
             D      V     +  G R F                    T   +       +  + 
Sbjct: 331 GNDENGMPAVNVTLNNAAGQRMFDYTSANVGKLMSVVFIERVPTVTVVDGKEIRSVRVKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P    A   GK   +     + A  LA +L++GSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALPSTRIAGVFGKNFRTTGLEKKEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 97/267 (36%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +        G  + V+    V    V    E   +              +    ++  
Sbjct: 350 QRMFDYTSANVGKLMSVVFIERVPTVTVVDGKEIRSVRVKEEALPSTRIAGVFGKNFRTT 409

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               +         K   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 410 GLEKKEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F       L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++L    +  +  I     +  G  +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 529 ELRL---GVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I ++  + + IY  R K   +
Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 34/123 (27%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W   L  ++  +  L ALPN   +    +                          
Sbjct: 2   LEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQ-------------------------- 35

Query: 61  DEDDFVNGFLQMYSDELRSFLKKE----GIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                         D LRS +  E    GI   ++ +  + + +     + +    D + 
Sbjct: 36  ----ITASRGAQLDDALRSRIDGELKSAGITPKAITKEGDSLMVRLPSLQAQTRANDVLR 91

Query: 117 LFL 119
             L
Sbjct: 92  QQL 94


>gi|85712077|ref|ZP_01043130.1| Probable acriflavine resistance protein B, RND family efflux system
           component [Idiomarina baltica OS145]
 gi|85694067|gb|EAQ32012.1| Probable acriflavine resistance protein B, RND family efflux system
           component [Idiomarina baltica OS145]
          Length = 1033

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/546 (11%), Positives = 156/546 (28%), Gaps = 32/546 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G +  +     Q  + ++P+  P               +      
Sbjct: 8   RPIFAWVIAILVMLAGTISLI-----QLPIAQYPTIAPPAVE---------IQVNYPGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V+  +    ++  + +                ++L+FA     +    +V   L   
Sbjct: 54  AETVSNTVTKVIEQNMTGVDNLLYFSSQSNAGSATVSLTFASGTDPDIAQVQVQNKLSQA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  + ++  +  +      +++     +       + S  +     D +  +E    
Sbjct: 114 TPQLPQEVQQQGITVSKSSSSFLMVLAMVAEDDRYEQTDLSDYLASNVQDAVSRTEGVGN 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                         + P  L     T A++       N        G     +       
Sbjct: 174 VQIFGAPYAMRIWVK-PDALVNYNMTIAELQSAIRAQNAQVAAGQLGGAPAVEGQRLNAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  +  +S             +  +    +        +        +            
Sbjct: 233 IIAQTRMS-------------EPDQFENILLKVLPDGSQVRLKDVARVELGAENYAIQAN 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T E      A L          +           S S  
Sbjct: 280 YNGKPATGLAIQLQTGANALATAEAVKQTVAELEPYFPDGMKMVTAYDTTPFIKISISEV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    LV +++F+ +   +  L+   +I + ++ T+ +++L G ++   ++ G+VL
Sbjct: 340 ARVLIEAIILVFVLMFVFLQNLRATLIPTLAIPVVILGTMGVMALAGFSINTLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IGL VD  I+V E +    + +  S   +      +    +    +        + FF 
Sbjct: 400 SIGLLVDDAIVVVENVERLMSEEGLSPKQATIKSMGQITGALVAIGVVMAAVFAPMAFFP 459

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F++T+  S+ +S+  AI    A+   +++  K K         +F      
Sbjct: 460 GATGAVYRQFSLTIITSMSLSVMVAIIFSPALCATLLKPVKKKENGGWGPLGWFNRTLQK 519

Query: 539 AIQFMR 544
           A    R
Sbjct: 520 ATIKYR 525



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 89/269 (33%), Gaps = 6/269 (2%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              ++    F+  +   +     V L  V       +   I           L       
Sbjct: 236 QTRMSEPDQFENILLKVLPDGSQVRLKDVARVELGAENYAIQANYNGKPATGLAIQLQTG 295

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
            +++A    ++    ++    P      T        +  I +    +I + I + + ++
Sbjct: 296 ANALATAEAVKQTVAELEPYFPDGMKMVTAYDTTPFIKISISEVARVLIEAIILVFVLMF 355

Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           +  +     L     + + I  T+G  AL G   N   +  ++  IG  V+D +VV + +
Sbjct: 356 VFLQNLRATLIPTLAIPVVILGTMGVMALAGFSINTLTMFGMVLSIGLLVDDAIVVVENV 415

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
                +    +S +    KS+ +  G  V   +       PMA + G+       F++ +
Sbjct: 416 --ERLMSEEGLSPKQATIKSMGQITGALVAIGVVMAAVFAPMAFFPGATGAVYRQFSLTI 473

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              + ++   +I  +  +   +     K 
Sbjct: 474 ITSMSLSVMVAIIFSPALCATLLKPVKKK 502



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 79/246 (32%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N+   +            G    ++++G     ++ Q  PG S  +  +        
Sbjct: 785  VRNNQGDMVPFSSFASWEWTYGPQRIESYNGVSAMEIQGQAAPGYSSGEAMMAMEQLISK 844

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                       T +   +          + + +  + +     +   W      +  + L
Sbjct: 845  LPNGIGYEWTGTSLQEQQSGDFAPILYTISIFVVFLCLA---ALYESWSIPFSVMLVVPL 901

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   +    L GI+ ++     +LT +G S  + +++ +  +    L        +   
Sbjct: 902  GILGAVIATMLRGIQNDVYFQVGLLTTVGVSARNAILIVEFAKD---LQEQGKDLLEATL 958

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +++   L   + TS+A    V+P+A+    G +   +    +  G++     +IF     
Sbjct: 959  EAVRLRLRPILMTSLAFIFGVMPLALSSGAGAASRNAIGTSVIGGMLGGTILAIFFVPLF 1018

Query: 820  LLFIYD 825
               +  
Sbjct: 1019 FYTVRK 1024


>gi|306813681|ref|ZP_07447862.1| Putative efflux pump (Putative multidrug-efflux transport protein)
           [Escherichia coli NC101]
 gi|312966775|ref|ZP_07780993.1| acrB protein [Escherichia coli 2362-75]
 gi|281178485|dbj|BAI54815.1| multidrug efflux protein [Escherichia coli SE15]
 gi|305852955|gb|EFM53400.1| Putative efflux pump (Putative multidrug-efflux transport protein)
           [Escherichia coli NC101]
 gi|312288239|gb|EFR16141.1| acrB protein [Escherichia coli 2362-75]
 gi|315297209|gb|EFU56489.1| putative ATP synthase F0, A subunit [Escherichia coli MS 16-3]
 gi|330911161|gb|EGH39671.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli AA86]
          Length = 1035

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     D+    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q        R        +     + L+        +  +   ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 42.0 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|217977632|ref|YP_002361779.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocella silvestris BL2]
 gi|217503008|gb|ACK50417.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocella silvestris BL2]
          Length = 1049

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 83/685 (12%), Positives = 188/685 (27%), Gaps = 48/685 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  +L  ++   G +  L        + ++PS  P               + + V   
Sbjct: 9   PVFAWVLAIIVMLAGAVAVL-----TLPIAQYPSIAPPA-------------VSISVTYP 50

Query: 64  DFVNGFLQM-YSDELRSFLKKEGIG---VFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
                 +Q      +   L              +  +  ITLSF      +    +V   
Sbjct: 51  GASAETVQSTVVQVIEQQLSGLDHLLYFSSESDKDGSITITLSFDQGTNPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           LQ    +L    ++  +      +  +V+           + +    I     D I  + 
Sbjct: 111 LQLAQPRLPQAVQQQGIQVAKATKNFLVVVGFVSTDGAMTSADLGDFIASSIQDPISRTP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP++L     T   +S      N        G      +  
Sbjct: 171 GVGDYQLFGSQ-YAMRIWLDPAKLNNYALTPGDVSAAIQAQNVQVAAGELGGLPAVKNQQ 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +     +                 +    +   E    +        I        
Sbjct: 230 LNATIIGPSYL-------------QTPQQFGEILLRVEPTGAKVLLRDVARIELAGESYS 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                     +       +  +   T++        LR         I           S
Sbjct: 277 VDTKYNGRPASALAVKLASGANALDTVKAVRATIEQLRPNFPSGVEAIYPYDTTPFVELS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T  +   LV +++++ +   +  L+   ++ + ++ T A+LSL G ++   ++ 
Sbjct: 337 IHGVVETLIVAVVLVFLIMYLFLQNLRATLIPTIAVPVVLLGTCAILSLAGFSINSLTMF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IGL VD  I+V E +     ++  S   +           +    +      + +
Sbjct: 397 GMVLAIGLLVDDAIVVVENVERVMEEDHLSPKEATRKSMDEISGALVGIALVLTAVFLPM 456

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            FFGG      R F+IT+  S+++S+  A+    A+   I        +       + N 
Sbjct: 457 SFFGGSTGVIYRQFSITIVSSMILSVLVALVFTPALCATILKRPKEGGKRGFFGWFNRNF 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     + +         +    + ++  +  +         + +G +   V+A  
Sbjct: 517 DRGNRRYVGVVKLAIAHPILSMLAFVGVTTVLVLVFVRIPSGFLPDEDQGVMFAQVVAPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +     + ++ + E  F V      G       +   +K        
Sbjct: 577 GATSIRTQQVLDEVSDYLRTDESHNVEGVFEVNGFSFGGRGQNAGLIFVKLKDWSERPGE 636

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            + +Q           E+    +  
Sbjct: 637 QNKVQAIAGRAMARFGEIKDARVFA 661



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 87/244 (35%), Gaps = 6/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V     + +   +  +      + L        +++   + +    +++    P     
Sbjct: 264 DVARIELAGESYSVDTKYNGRPASALAVKLASGANALDTVKAVRATIEQLRPNFPSGVEA 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                        I   +  +I++ + + + +++  +     L     + + +  T    
Sbjct: 324 IYPYDTTPFVELSIHGVVETLIVAVVLVFLIMYLFLQNLRATLIPTIAVPVVLLGTCAIL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   N   +  ++  IG  V+D +VV + +     +    +S ++   KS++E  G 
Sbjct: 384 SLAGFSINSLTMFGMVLAIGLLVDDAIVVVENV--ERVMEEDHLSPKEATRKSMDEISGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V  ++      LPM+ +GGS       F+I +   ++++   ++     +   I     
Sbjct: 442 LVGIALVLTAVFLPMSFFGGSTGVIYRQFSITIVSSMILSVLVALVFTPALCATILKRPK 501

Query: 829 KNAR 832
           +  +
Sbjct: 502 EGGK 505


>gi|145599422|ref|YP_001163498.1| aminoglycoside/multidrug efflux system [Yersinia pestis Pestoides
           F]
 gi|145211118|gb|ABP40525.1| multidrug efflux protein [Yersinia pestis Pestoides F]
          Length = 1043

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       +TL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASVTLTFQAGTNPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  D ++  +  +   + ++++             + S  +     D +   
Sbjct: 110 QLQSAIKRLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDISDYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT+ +       N        G     D+ 
Sbjct: 170 EGVGSVDAFGSQ-YAMRIWLDPNKLTNYQLTTSDIVSAIQSQNTQVAVGQLGGTPAVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEEFREITLRVNQDGSLVTLGDVAKIELGSEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +      A L           +          
Sbjct: 276 DYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPHGLEAKIAYETTPFVQA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGTFAVLSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALIGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  AM   +     +K I          
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATL-----LKPIAPGHHHAKRG 510

Query: 534 IPDCIAIQFMRARFWG 549
                   F R     
Sbjct: 511 FFGWFNRMFDRNSHRY 526



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +   + ++    ++    P 
Sbjct: 260 VTLGDVAKIELGSEKYDYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETTPFVQASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ +
Sbjct: 380 FAVLSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALIGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNNRGKDLVEATLEASRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029


>gi|294635344|ref|ZP_06713839.1| inner membrane multidrug efflux protein BpeB [Edwardsiella tarda
           ATCC 23685]
 gi|291091281|gb|EFE23842.1| inner membrane multidrug efflux protein BpeB [Edwardsiella tarda
           ATCC 23685]
          Length = 1051

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 70/688 (10%), Positives = 181/688 (26%), Gaps = 51/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  +        + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIILMLAGALAIM-----SLPVAQYPTVAPPA-------------VTVSASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAATVQNSVTQVIEQNMNGLDNLMYMSSTSDSAGNAAITLTFEAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D +  +
Sbjct: 110 KLQLAMPSLPQEVQQQGVSVDKASSSILLVAGFISEDGSLSQDDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L +   T   +     + NN   G   G        
Sbjct: 170 QGVGSVQLFGSQ-YAMRIWLDPNKLNKYNLTPVDVISQIKVQNNQIAGGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    R        +       
Sbjct: 229 QLNASIIVQTRL-------------KDPAEFGKILLKVQPDGSRVLLRDVARVELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A L          +           
Sbjct: 276 GTVARYNGKPAAGIAVKLATGANALDTAKAVKAELAKLAPYFPASLKTVYPYDTTPFVQL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+++ +   +  L+   ++ + ++ T A+L ++G ++   ++
Sbjct: 336 SIDEVVKTLLEAIVLVFAVMYLFLQNIRATLIPTIAVPVVLLGTFAILEIVGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +          ++       
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPALCATMLKPIAKGSHGVQTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + V   ++     +  +         + +G +    
Sbjct: 516 NRLFEKSTHHYTDSVGRILRGTGRYLVIYLLIVVGMGLLFIRLPTSFLPEEDQGVLLTMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                       + L+ +     + +  + E  F V      G           +K    
Sbjct: 576 QLPPGATQERTNNVLKQVTDYYETKEKHNVESVFTVSGFGFSGQGQNNGLAFISLKPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIV 671
                + +            ++    + 
Sbjct: 636 RKGDENKVTAIIQRAAFAFSKITDAMVY 663



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 80/231 (34%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +      +        +        +++   + ++    K+    P S   
Sbjct: 264 DVARVELGAENYGTVARYNGKPAAGIAVKLATGANALDTAKAVKAELAKLAPYFPASLKT 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + + +   +++  +     L     + + +  T    
Sbjct: 324 VYPYDTTPFVQLSIDEVVKTLLEAIVLVFAVMYLFLQNIRATLIPTIAVPVVLLGTFAIL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 EIVGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKKSMEQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSSMVLSVLVAMILTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +    + +  L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMAMMESLVAKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +     M     
Sbjct: 898  FSVMLVVPLGVVGALLATSLRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAVDLMHKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 958  G--LVEATLEAVRMRLRPILMTSLAFILGVMPLVISNGAGSGAQNAVGTGVMGGMVSATI 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|127510967|ref|YP_001092164.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           loihica PV-4]
 gi|126636262|gb|ABO21905.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella loihica PV-4]
          Length = 1049

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 68/687 (9%), Positives = 180/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +     +  + ++PS  P   +          + +     
Sbjct: 8   RPIFAWVIAIIVMLAGVLSIM-----KLPVSQYPSIAPPTVV---------INAIYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTMEDTVTQVIEQRMTGIDHLRYISSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + +   +         +++             + S  +    +D +       
Sbjct: 114 AMPLLPQEVQAQGVKVNKSSSGFLMVLGFVSQDGSLEKNDISDYVGSNILDPMSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L Q   T+  +       N        G            
Sbjct: 174 EIQLFGAQ-YAMRIWLDPLKLTQYNLTSLDIMASIREQNAQVSAGQLGGAPSIAGQELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +    + +      +           
Sbjct: 233 TVTAQSRL-------------QTAEEFRKIIIKSDPSGAKVYLEDVARVELGSESYSVES 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T E        ++         +           S   
Sbjct: 280 FYNGRPAAGLAIKLATGANALATAERVREKVDEMKPFFPQGLEVVYPYDTTPFVEKSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T A+LS  G ++   ++  +V
Sbjct: 340 VVHTLLEAVVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +    S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEDGLSPIEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G      R F++T+  ++ +S+  AI +  A+   +          +        +   
Sbjct: 460 SGSTGVIYRQFSVTIVSAMALSVLVAIILTPALCATMLKPIAKGHHAVETGFFGWFNRTF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A    RA    +    L        +         + +G +    +   
Sbjct: 520 DKMTSRYEAGVAAMIKRAGRVMLIYVALTVAVGWIFMRMPTAFLPDEDQGILFTQAILPT 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  +  +    ++      +  F V      G           +K       P
Sbjct: 580 NSTQESTKKVMSKISDFYLNETGDSVKSVFSVSGFSFAGSGQNMGLAFVGMKDWSERTGP 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
              +++       +  ++    +   +
Sbjct: 640 GQDVKSVAGRAMGMFMQMKEAFVFAFV 666



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 80/240 (33%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       +   +           L        +++A    +     ++ 
Sbjct: 255 PSGAKVYLEDVARVELGSESYSVESFYNGRPAAGLAIKLATGANALATAERVREKVDEMK 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  ++ + + + + +++  + +   L     + +
Sbjct: 315 PFFPQGLEVVYPYDTTPFVEKSIEGVVHTLLEAVVLVFVIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    +  G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEDGLSPIEATK 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F++ +   + ++   +I +   +
Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSVTIVSAMALSVLVAIILTPAL 492



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 72/249 (28%), Gaps = 11/249 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +       V  S   +         +   N     N           
Sbjct: 776  QYRMQPEDLDTWYVRNSQGEMVPFSAFATGTWEYGSPRLERFNGLPAMNIQGGTAQGYST 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   +  MV K            + E              +  + I  +  L+   + 
Sbjct: 836  GAAMADIEAMVAKLPPGFGVEWNGLSYEERLSGNQAP----ALYALSI-MVVFLVLAALY 890

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 891  ESWSVPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
               Y       +    ++   L   + TS+A  + V+P+A+  G       AI    G++
Sbjct: 951  ---YEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGT--GVL 1005

Query: 807  VAASSSIFI 815
                SS F+
Sbjct: 1006 GGMMSSTFL 1014


>gi|253690284|ref|YP_003019474.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251756862|gb|ACT14938.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 1038

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/689 (11%), Positives = 186/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           L+++P   P               + +    
Sbjct: 8   RPIFAWVLAILLSLCGMLAI-----KSLPLEQYPDLAPP-------------SVRITASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q ++ L+F      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLMYMSSDSSNTGQARVMLTFEAGTNPDEARQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  + ++  +  +   + +I++             + +  +     + I   
Sbjct: 110 QLQSAIRKLPQEVQQQGVTVSKTGDTNILMVAFVSTDGSMDKQDIADYVATNIQEPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     TT+ +       N+       G     D+ 
Sbjct: 170 SGVGEVSAYGSQ-YAMRIWLDPAKLMDYALTTSDVVRAIESQNSQVSVGQVGGVPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSAVTLANVAEVELGAERY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    +  +  +   T +        L           +          
Sbjct: 276 DFLSRFNGQSASGLGVTLASGANELETDKRVRERIDELSRYFPHGMEAKIAFETSPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G +L   ++
Sbjct: 336 SITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYACGFSLNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQVQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +           R       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVTSMILSVLVAMILTPALCATLLKPLAKGQHHGRKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +           +    M +  W +    +  + +             + +G     V
Sbjct: 516 NRSFTRTSLKYERGVGKILMSSGRWLLLYMGIIGVMAFLFFRLPTSFLPQEDRGVFTTQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +  ++   ++ +       F        G+     R+   +K    
Sbjct: 576 QLPPGSTQQQTLQVVNKIEQYYLTQEKDTVTSVFSTIGSGPGGNGQNVARLFIRLKDWNE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              P S+         K  R +    +  
Sbjct: 636 RTTPESSSFAVIERATKAFRHIQEARVFA 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +  D   +      + L        + +   + +     +++   P 
Sbjct: 260 VTLANVAEVELGAERYDFLSRFNGQSASGLGVTLASGANELETDKRVRERIDELSRYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +  + + + + +++  + +   L     + + +  T
Sbjct: 320 GMEAKIAFETSPFVKASITDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 380 FAVLYACGFSLNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +GG+       F+I +   ++++   ++ +   +   + 
Sbjct: 438 VQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSITIVTSMILSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 8/167 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G  +   L       +  IS + + + +   ++ W      +  + + +   L 
Sbjct: 853  FGLEWTGMSLQERLSGAQAPALYAISLLVVFLCLAALYESWTVPFSVMLVVPMGVLGALV 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 G+E ++     +LT++G S  + +++ +   +   +        +   ++  + L
Sbjct: 913  ATWARGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---MNQKGKDLVEATLEASRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
               + TS+A    VLPMA     G +   +    +  G++ A   +I
Sbjct: 970  RPILMTSLAFIFGVLPMATSSGAGSASQHAVGTGVIGGMLAATFLAI 1016


>gi|22125337|ref|NP_668760.1| aminoglycoside/multidrug efflux system [Yersinia pestis KIM 10]
 gi|108808228|ref|YP_652144.1| aminoglycoside/multidrug efflux system [Yersinia pestis Antiqua]
 gi|108811505|ref|YP_647272.1| aminoglycoside/multidrug efflux system [Yersinia pestis Nepal516]
 gi|149365096|ref|ZP_01887131.1| multidrug efflux protein [Yersinia pestis CA88-4125]
 gi|165926931|ref|ZP_02222763.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165935951|ref|ZP_02224521.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166011281|ref|ZP_02232179.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212605|ref|ZP_02238640.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399340|ref|ZP_02304864.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167422675|ref|ZP_02314428.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167424381|ref|ZP_02316134.1| acriflavine resistance protein D [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167467013|ref|ZP_02331717.1| acriflavine resistance protein D [Yersinia pestis FV-1]
 gi|218930088|ref|YP_002347963.1| aminoglycoside/multidrug efflux system [Yersinia pestis CO92]
 gi|229838640|ref|ZP_04458799.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229895705|ref|ZP_04510876.1| multidrug efflux protein [Yersinia pestis Pestoides A]
 gi|229899206|ref|ZP_04514349.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229901768|ref|ZP_04516890.1| multidrug efflux protein [Yersinia pestis Nepal516]
 gi|270489957|ref|ZP_06207031.1| putative ATP synthase F0, A subunit [Yersinia pestis KIM D27]
 gi|294504790|ref|YP_003568852.1| multidrug efflux protein [Yersinia pestis Z176003]
 gi|21958217|gb|AAM85011.1|AE013747_1 putative efflux pump [Yersinia pestis KIM 10]
 gi|108775153|gb|ABG17672.1| multidrug efflux protein [Yersinia pestis Nepal516]
 gi|108780141|gb|ABG14199.1| multidrug efflux protein [Yersinia pestis Antiqua]
 gi|115348699|emb|CAL21645.1| multidrug efflux protein [Yersinia pestis CO92]
 gi|149291509|gb|EDM41583.1| multidrug efflux protein [Yersinia pestis CA88-4125]
 gi|165916096|gb|EDR34703.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165921282|gb|EDR38506.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165989959|gb|EDR42260.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206536|gb|EDR51016.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166958382|gb|EDR55403.1| acriflavine resistance protein D [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167051844|gb|EDR63252.1| acriflavine resistance protein D [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167056263|gb|EDR66032.1| acriflavine resistance protein D [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681697|gb|EEO77791.1| multidrug efflux protein [Yersinia pestis Nepal516]
 gi|229687608|gb|EEO79681.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695006|gb|EEO85053.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229701511|gb|EEO89539.1| multidrug efflux protein [Yersinia pestis Pestoides A]
 gi|262362852|gb|ACY59573.1| multidrug efflux protein [Yersinia pestis D106004]
 gi|262366776|gb|ACY63333.1| multidrug efflux protein [Yersinia pestis D182038]
 gi|270338461|gb|EFA49238.1| putative ATP synthase F0, A subunit [Yersinia pestis KIM D27]
 gi|294355249|gb|ADE65590.1| multidrug efflux protein [Yersinia pestis Z176003]
          Length = 1043

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       +TL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASVTLTFQAGTNPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  D ++  +  +   + ++++             + S  +     D +   
Sbjct: 110 QLQSAIKRLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDISDYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT+ +       N        G     D+ 
Sbjct: 170 EGVGSVDAFGSQ-YAMRIWLDPNKLTNYQLTTSDIVSAIQSQNTQVAVGQLGGTPAVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEEFREITLRVNQDGSLVTLGDVAKIELGSEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +      A L           +          
Sbjct: 276 DYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPHGLEAKIAYETTPFVQA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGTFAVLSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALIGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  AM   +     +K I          
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATL-----LKPIAPGHHHAKRG 510

Query: 534 IPDCIAIQFMRARFWG 549
                   F R     
Sbjct: 511 FFGWFNRMFDRNSHRY 526



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +   + ++    ++    P 
Sbjct: 260 VTLGDVAKIELGSEKYDYLSRFNGQAASGMGIKLASGANELQTDKRVKARLAELAPFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETTPFVQASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTVAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ +
Sbjct: 380 FAVLSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALIGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAMCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNNRGKDLVEATLEASRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029


>gi|238896772|ref|YP_002921517.1| integral transmembrane protein of acridine resistance [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238549099|dbj|BAH65450.1| integral transmembrane protein of acridine resistance [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 1036

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 72/682 (10%), Positives = 186/682 (27%), Gaps = 42/682 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  L     Q  + ++P+  P                     +
Sbjct: 8   RPVFAWVLAIIMMIAGGLAIL-----QLPIAQYPTIAPPAV---------AISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +     +  ITL+F      +    +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFKSGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               +  + ++  +         ++++    D   +   + S  +     D I       
Sbjct: 114 ATPLMPQEVQQQGISVEKSSSSFLLVAGFISDNPTTTQDDISDYVASNVKDPISRLNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D + L +   T   +     + N+       G            
Sbjct: 174 DVQLFGAQ-YAMRVWLDGNLLNKYNLTPVDVINALQVQNDQIAAGQLGGTPALKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +                      I           
Sbjct: 233 SIIAQTRL-------------KDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +          +   T        A L+         +           S   
Sbjct: 280 RINGKPASGLGIKLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++ G+V
Sbjct: 340 VVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   + +   S+    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
           GG      R F+IT+  ++ +S+  A+ +  A+   +          +       +    
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALVLTPALCATLLKPASAEHHEKKGFFGWFNARFD 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                  + ++        + V   ++    ++  +         + +G     +     
Sbjct: 520 QSVNHYTNSVSGILRGTGRYLVIYLLIVVGMAVLFMRLPTSFLPDEDQGVFLTMIQLPSG 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                 +  L+++    +  +  + E  F V      G           +K         
Sbjct: 580 ATQERTQKVLDTVTDYYLHNEKANVESVFTVNGFSFSGQGQNSGMAFVSLKPWEARSGDK 639

Query: 649 STIQNTEIVGPKISRELIRKGI 670
           +++++          ++    +
Sbjct: 640 NSVESIIKRATVAFSQIKDAMV 661



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +            G + L V A+  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPQEFGKVTLRVNADGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAM 680
           +   G +   T      K    +      ++           ++ I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPYFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    ++FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAVLSMFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +S ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMVEEKLSPKEATEKSMSQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALVLTPALCATLLK 498



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 854  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLA 913

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+  ++     +LT IG S  + +++ +  +  M+         +   ++    L 
Sbjct: 914  ATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--IIEATLEAARMRLR 971

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + V+P+ +    G     +    +  G++ A   +I
Sbjct: 972  PILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATLLAI 1017


>gi|324112960|gb|EGC06936.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia fergusonii B253]
          Length = 1037

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 66/681 (9%), Positives = 172/681 (25%), Gaps = 47/681 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +IC  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILICLTGTLAIF-----SLPVEQYPELSPP-------------NVRISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TL+F      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLTFEAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSALRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G        
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSIPQQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRAITLRVNQDGSEVKLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           V          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L     ++   ++
Sbjct: 336 SIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLYAFDYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERIMSEEGLSPRAATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINP 527
           + FFGG      R F+IT+  ++++S+  A+ +  A+   I++          K      
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCATILKPLHKGEQHGQKGFFGWF 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
              F    D       +     +   +++ +    ++               +     + 
Sbjct: 516 NRVFNRNADRYERGVAKILHRSLRWLLIYLLLIGGMVVLFMRLPSSFLPQEDRGMFTTSV 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            +     +     +      +     + N +              + +  +  ++ +   
Sbjct: 576 QLPSGSTQQQTLKVVEQVEKYFFTHEKDNIMSVFATVGSGPGGNGQNVARMFVRLKDWDE 635

Query: 648 LSTIQNTEIVGPKISRELIRK 668
                 +       + +  +K
Sbjct: 636 RDPKTGSVFAIIDRATQAFKK 656



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 83/235 (35%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  + +     ++ +  P 
Sbjct: 260 VKLGDVATVEMGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKRVIERLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  +     L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAVALVFLVMYLFLQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 F    N   + A++  IG  V+D +VV + +     +    +S R    KS+ +
Sbjct: 380 FAVLYAFDYSINTLTMLAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPRAATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 80/269 (29%), Gaps = 13/269 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  D      +       V  S   ++        +   N       +         
Sbjct: 776  PYRMLPDDINLWYVRNKDGGMVPFSAFATSRWETGSPRLERYNGYSAVEIVGEAARGVST 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   +  +V +         T  + +              +  +  S + + + +   
Sbjct: 836  GTAMEIMENLVHQLPGGFGLEWTAMSYQERLSGAQAP----ALYAI--SLLVIFLCLAAL 889

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      +  + L +   L    + G+E ++     +LT+IG +  + +++ +    
Sbjct: 890  YESWSVPFSVMLVVPLGVVGALLATWMRGLENDVYFKVGLLTVIGLAAKNAILIVEFAND 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
               +        +    +  + L   + TS+A    VLPMA+    G +   +    +  
Sbjct: 950  ---MNQKGHDLLEATLHACRQRLRPILMTSLAFIFGVLPMAISNGAGSASQHAVGTGVMG 1006

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G++ A   +I+      + +        R
Sbjct: 1007 GMISATILAIYFVPLFFVLVRRRFPLKPR 1035


>gi|192362116|ref|YP_001981946.1| protein-export membrane protein SecF [Cellvibrio japonicus Ueda107]
 gi|190688281|gb|ACE85959.1| protein-export membrane protein SecF [Cellvibrio japonicus Ueda107]
          Length = 387

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 149/346 (43%), Gaps = 6/346 (1%)

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
            +        + +    +    + +   R   +  I     +     P  +     R   
Sbjct: 27  ISFAALAVNGLKLGLDFTGGTQLEVLFDRPADLDKIRDVLEAEELKSPVAVLFGSDREVM 86

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                 +         L       G   +G  +         D+ VV +           
Sbjct: 87  IRTQDQMKEKALQKLRLSFAAKGNGAVLEGVERPEREYESFADVLVVSNASLDSVRQAKP 146

Query: 608 FQNFDGEKNFLVRLQ-----YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             +           +          S+    + +++    +       ++++E VGP+I 
Sbjct: 147 LGDSGDYGRVEYSQRDGKVLVIVEKSIESAYLNQLIGDMESATGADIQLRSSEFVGPQIG 206

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            EL  +G +G++ +   + +Y+ ++F+W F++GAI  LI ++  T+G FALF  +F+L  
Sbjct: 207 GELRDQGGLGLLAAFALVFLYVAVQFQWKFSVGAIIGLIHNVIITVGCFALFQWDFDLNV 266

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +AAVL LIGYS+ND +VV+DR+R+N ++   + S  ++I+ SI +TLGR++ TS + ++ 
Sbjct: 267 LAAVLALIGYSINDTIVVFDRIRENFRILRKTSS-HEVINISITQTLGRTIMTSASVYLV 325

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  +    G V+  FA+ +  GIV    SS++IA+ I   +   + 
Sbjct: 326 LFSLYFIAGEVLQGFALALIIGIVAGTYSSVYIASNIAAALGVTKE 371


>gi|29833380|ref|NP_828014.1| preprotein translocase subunit SecF [Streptomyces avermitilis
           MA-4680]
 gi|29610503|dbj|BAC74549.1| putative preprotein translocase SecF subunit [Streptomyces
           avermitilis MA-4680]
          Length = 368

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 141/309 (45%), Gaps = 14/309 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    +   F+  R    GISIL +I +I  L   GLN GI+F+GG             
Sbjct: 10  RLHRGEVGYDFVGNRKIWYGISILITITAILGLTVRGLNMGIEFQGGAVFTTPKTSVSVS 69

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
              R   E+     I  +   G     +           +  + + +K    +I      
Sbjct: 70  QAERYAEEASGHDAIVQKLGSGGLRVQIAGVDTGKSDQIKAELSQNLKVDSEKINAD--- 126

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
               +VGP    ++  K   G++I  I ++IY+ I F+W  A+ A+  LI DIT T+G +
Sbjct: 127 ----LVGPSWGEQIANKAWQGLVIFMILVVIYLAIAFEWRMAVAALVALIHDITITVGIY 182

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           AL G E     V  +LT++GYS+ D VVV+D +++  K  T     ++ D+ ++SIN TL
Sbjct: 183 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDLTKQTRWTYSDVANRSINSTL 242

Query: 770 GRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ T++ A + V  +   GG       +   ++ +  G+   A SSIFIA P++  + 
Sbjct: 243 VRSINTTVVALLPVAGLLFIGGGVLGAGTLNDISLSLFVGLAAGAYSSIFIATPLVADLK 302

Query: 825 DWRAKNARI 833
           +   +   +
Sbjct: 303 EREPQMKAL 311


>gi|147677371|ref|YP_001211586.1| preprotein translocase subunit SecF [Pelotomaculum
           thermopropionicum SI]
 gi|146273468|dbj|BAF59217.1| preprotein translocase subunit SecF [Pelotomaculum
           thermopropionicum SI]
          Length = 298

 Score =  198 bits (503), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 87/290 (30%), Positives = 150/290 (51%), Gaps = 7/290 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F++ R     IS+L  +  I  LF+ GLN GIDF GG    +  N+P  +  VRS L 
Sbjct: 8   FHFIKLRKIWYAISVLIIVPGIISLFSQGLNMGIDFSGGSLFDLKFNQPTAVEQVRSVLG 67

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
              +   S Q  +          +              V + + E +   T+Q +E VGP
Sbjct: 68  GFGLEGASIQRSNETD-------FLIRTRELTEEESTKVVQALNEKLGGVTLQRSERVGP 120

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            + RELI K +  + ++++ M+IYI  RF++   + AI +L+ D+   +G F++F IE +
Sbjct: 121 VVGRELIMKALGALAVASVLMVIYIAWRFEFKQGVAAIISLLHDVLVVVGIFSIFQIEID 180

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
              +AA+LT+IGYS+ND +V++DR+R+N+       +  D+I+ S+ +T+ RS+ T +  
Sbjct: 181 SAFIAAILTIIGYSINDTIVIFDRIRENLLNKKKGDALEDIINASLWQTIARSINTVLTV 240

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              ++ + + GG+ I S  + +  G+   A SSIF A+P+         +
Sbjct: 241 EFVLVALLLLGGTTIRSMVLALLVGVTSGAYSSIFNASPLWFDFKRLERR 290


>gi|218700009|ref|YP_002407638.1| putative efflux pump [Escherichia coli IAI39]
 gi|218369995|emb|CAR17769.1| Putative efflux pump (Putative multidrug-efflux transport protein)
           [Escherichia coli IAI39]
          Length = 1035

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 78/683 (11%), Positives = 187/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     D+    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQ---FMRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592
               Q       R     + +   +     L    L           ++ V    P   +
Sbjct: 520 EDKYQQGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 42.0 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|324115130|gb|EGC09094.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia fergusonii B253]
 gi|325498844|gb|EGC96703.1| multidrug efflux system protein [Escherichia fergusonii ECD227]
          Length = 1037

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/689 (10%), Positives = 183/689 (26%), Gaps = 51/689 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G+L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSISAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFESGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D I  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNIKDSISR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      I      
Sbjct: 228 QQLNASIIAQTRL-------------KDPRQFGNVTLRVNTDGSVVHLKDVARIELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +            A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDAATAIKAKLAELQPFFPQGMKVVYPYDTTPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAILLVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     ++      + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMIEDNLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVTAEHHENKSGFFAW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + ++        + +   ++ +   +  L         + +G     
Sbjct: 515 FNRTFDHSVNHYTNSVSRIIGVTGRYLLIYVLIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G           +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKEEKANVESVFTVNGFSFSGQGQNAGMAFVSLKPWE 634

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 ++ +       +   ++    ++
Sbjct: 635 ERSGKENSAEAVISRAKQALGQIRDGFVI 663



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 93/269 (34%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +            G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPRQFGNVTLRVNTDGSVVHLKDVARIELGGENYNVIARINGKPAAGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +       ++    ++    P               +  I + +  +  + + +
Sbjct: 292 KLATGANALDAATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKLSIHEVVKTLFEAILLV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++  R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMIEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 69/183 (37%), Gaps = 5/183 (2%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFA 693
            + +    +    L T    +  G      L       +I +S + + + +   ++ W   
Sbjct: 838  DAMALMESFATKLPTGIGYDWTGMSYQERLSGNQAPALIAVSFVVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L I   L    LF  + ++  +  +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGIVGVLLAATLFNQQNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
                 +    S+   L   + TS+A  + VLP+A+  G+        +  G++    S+ 
Sbjct: 958  G--VIEATLSSVRMRLRPILMTSLAFILGVLPLAISSGAG-SGAQNAVGIGVMGGMISAT 1014

Query: 814  FIA 816
             +A
Sbjct: 1015 LLA 1017


>gi|163857339|ref|YP_001631637.1| AcrB/AcrD/AcrF family protein [Bordetella petrii DSM 12804]
 gi|163261067|emb|CAP43369.1| AcrB/AcrD/AcrF family protein [Bordetella petrii]
          Length = 1072

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 73/709 (10%), Positives = 181/709 (25%), Gaps = 51/709 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L     Q  + ++P+                  + + V+ 
Sbjct: 8   RPVFAWVVAIVLMMAGALAIL-----QLPVAQYPNIASPA-------------ISIRVNY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +       +   +                 +  ITL+FA     +    +V  
Sbjct: 50  PGASAQTVQDSVVQVIEQQMNGIDNLNYISSESNSDGSMSITLTFAQGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L ++ ++  +  +   +  ++++            + +  +     D +  +
Sbjct: 110 KLAVAQPLLPLEVQQQGIRVSKATKNFLIVAGFISTDGSMAKEDLANYVAANVQDPVSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     TT  +       N        G        
Sbjct: 170 AGVGDFQLFGSQ-YAMRIWLDPDKLLAFDLTTVDVMNAVKEQNVQVSSGELGGLPAMRGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +                 +    +        +        +       
Sbjct: 229 QLNATIIGPSRL-------------QTPEEFGRILLKVNADGSQVRLSDVARVSLGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T++        L+    P    +           
Sbjct: 276 SIDSYYNGKPASGLAIKLAPGANALDTVDAVRDTINRLKPFFPPGMDVVYPYDTSPFVAL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SIESVIHTLIEAIILVFLVMYLFLQNLRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMVEEGLSPRQATRKSMGQITGALIGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSI 523
           + FFGG      R F+IT+  S+++S+  AI    A+   +++                 
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSSMVLSVLVAIIFTPALCATLLKRVPKGHHAARTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + +A    R +   +   +L                  + +G +   V
Sbjct: 516 NRFFERSTHGYANSVARGLGRTKRLMLIYLVLLVAMGWMFTRIPTSFLPNEDQGILFAQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A            +E+     +  +       F V      G       +   ++    
Sbjct: 576 QAPAGATAERTSHTVEAATRYLLEDEKDAVASVFAVHGFSFGGRGQNSAILFIKLRDWKE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                  +              +    V        M +   + F +  
Sbjct: 636 RGDAALKVGALAQRANAYFATHLHDARVTAFAPPAVMELGNALGFDFQL 684



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 88/243 (36%), Gaps = 7/243 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R +L +      S+ N        ++L            V + + +      P   
Sbjct: 263 SDVARVSLGAQSYSIDSYYNGKPASGLAIKLAPGANALDTVDAVRDTINRLKPFFPPGMD 322

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
           +       P ++  +    I  +I + I + + +++  +     L     + + +  T G
Sbjct: 323 VVYPYDTSPFVALSI-ESVIHTLIEAIILVFLVMYLFLQNLRATLIPTLAVPVVLLGTFG 381

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             A FG   N   +  ++  IG  V+D +VV + +     +    +S R    KS+ +  
Sbjct: 382 VLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEEGLSPRQATRKSMGQIT 439

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  +  ++      +PMA +GGS       F+I +   +V++   +I     +   +   
Sbjct: 440 GALIGIALVLSAVFVPMAFFGGSTGVIYRQFSITIVSSMVLSVLVAIIFTPALCATLLKR 499

Query: 827 RAK 829
             K
Sbjct: 500 VPK 502



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 69/198 (34%), Gaps = 8/198 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E + +       + T    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMAEMERIAATMPTGVGFQWTGLSYEERLSGSQAPALYAISLIVVFLCLAALYESWAIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L    L G+  ++     +LT +G S  + +++ +  +     Y  
Sbjct: 898  TSVMLVVPLGVIGVLAATLLRGLSNDVYFQVGLLTTVGLSAKNAILIVEFAK---AHYEE 954

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
              S  +    +  + L   + TSMA  + V+P+A+    G     +    +  G++    
Sbjct: 955  GASLVEAAVHAARQRLRPILMTSMAFILGVVPLAISSGAGSGSQHAIGTGVIGGMLAGTF 1014

Query: 811  SSIFIAAPILLFIYDWRA 828
             +IF      + +     
Sbjct: 1015 LAIFFVPAFFVVMLRLFK 1032


>gi|13539232|emb|CAC35725.1| AcrB protein [Enterobacter aerogenes]
          Length = 1048

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/685 (9%), Positives = 175/685 (25%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLSIM-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFQSGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMDPTKLNNFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T        A +          +           S   
Sbjct: 280 KFNGQPASGLGIKLATGANALDTANAIRAELAKMEPYFPSGLKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L++ G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAVFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++ +S+  A+ +  A+   +                   +   
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGGHGEHKGFFGWFNRMF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + V   I+    +   +         + +G          
Sbjct: 520 DKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFLSMAQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +    ++ +  + E  F V      G           +K        
Sbjct: 580 GASQERTQKVLDEMTDYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            + ++           ++    +  
Sbjct: 640 ENKVEAITGRAMARFSQIKDAMVFA 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  +      + L        +++     +     K+    
Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A+FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAVFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMAMMEQLASKLPSGVGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|94312852|ref|YP_586061.1| multidrug efflux system protein [Cupriavidus metallidurans CH34]
 gi|93356704|gb|ABF10792.1| multidrug efflux system [Cupriavidus metallidurans CH34]
          Length = 1048

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 69/686 (10%), Positives = 183/686 (26%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           ++++P+  P               +      
Sbjct: 8   RPIFAWVIALVIMLAGVLSI-----RTLPINQYPAIAPPTI---------AISVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L +            +  IT++F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGLDRLRYISSESNSDGSMTITVTFEQGTNPDIAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      +++             + S  I+    D +  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKSVRNFLLIVGLISTDPNMTREDLSNYIVSNIQDPLSRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L         +S      N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNSYQLAPLDVSNAIKAQNVQVASGQLGGLPAVRGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +                 +    +        +       ++           
Sbjct: 233 TVIGKTRL-------------QTAEQFGDILLKVNPDGSQVRLKDVADVALGGQDYTINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T++      A L     P    +           S   
Sbjct: 280 QYNGRPASGIAIRLASGANALETVKNIHNTLAQLEPTFPPGIKVVFPYDTTPVISDSIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VIKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +             +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEDGLGPKEAARKSMGQIQGALVGIALVLSAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++++S+  A+ +  A+   +            +       + +
Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVLVALVLTPALCATMLQPIEKGDHGEHKQGFFGWFNRS 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +         ++    R   + +    +  +               + +G +   V   
Sbjct: 520 FIRSTQSYERGVSGILKRRAPFLLIYLAIVVVMGFLFTRIPTSFLPEEDQGVLYAQVQTP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   ++ L+ ++   ++ +    E  F V      G   +      ++K       
Sbjct: 580 AGSSAERTQAVLDQMRNYLLNDEGKIVESLFTVNGFNFAGRGQSSGLAFILLKPFKDREG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++ +                   
Sbjct: 640 DATSVFDLTKRAQAKFSTFRDSLAFA 665



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 79/253 (31%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +            G    Q ++G     +  +   G S  +         K 
Sbjct: 790  VRNDKGDMVPFSSFATGKWGFGSPKLQRYNGVPAVEILGEPAAGKSSGEAMAAVEEIMKQ 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W      +  + L
Sbjct: 850  MPAGISYSWTGLSYEERLSGSQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT +G S  + +++ +  ++   L+       +   
Sbjct: 907  GVIGALLATLARGLSNDVFFQVGLLTTVGLSAKNAILIVEFAKE---LHDHGKGLVEAAV 963

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TSMA  + V P+AV    G     +    +  G++ A   +IF     
Sbjct: 964  EACRMRLRPIIMTSMAFMLGVFPLAVSQGAGAGSQHAIGTGVIGGMITATVLAIFWVPLF 1023

Query: 820  LLFIYDWRAKNAR 832
             + +   + +  +
Sbjct: 1024 FVVVSALKERRGK 1036



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 6/220 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q   I+ Q      + +        +++   + +     ++    
Sbjct: 258 SQVRLKDVADVALGGQDYTINAQYNGRPASGIAIRLASGANALETVKNIHNTLAQLEPTF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  + I + I  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PPGIKVVFPYDTTPVISDSIHEVIKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFGVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEDGLGPKEAARKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
            +  G  V  ++      LPMA +GGS       F+I + 
Sbjct: 436 GQIQGALVGIALVLSAVFLPMAFFGGSTGVIYRQFSITIV 475


>gi|291617083|ref|YP_003519825.1| AcrB [Pantoea ananatis LMG 20103]
 gi|291152113|gb|ADD76697.1| AcrB [Pantoea ananatis LMG 20103]
          Length = 1053

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/686 (10%), Positives = 190/686 (27%), Gaps = 42/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   G+L           + ++P   P          +          
Sbjct: 8   RRPVFAWVIALCIMLFGILSI-----RSLPVAQYPDVAPP---------QISVQATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK--ITLSFADSRFKENIADKVTLFL 119
             + +   +    ++  + L        +      +  I ++F      +    +V   +
Sbjct: 54  SAETLESSVTQVIEQQLTGLDGLLYFSSTSTASTGQVKINVTFKQGTDPDIAQVQVQNKV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q   S+L        +     +   +++         S A + +  ++    D +     
Sbjct: 114 QQAESRLPSAVTSQGVTVQKAQSDFLLILAVYDKSNKSSASDVADYMVSNMEDTLARVTG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DPS+L       + ++      N        G +   +    
Sbjct: 174 VGNVQVFGA-EYAMRIWLDPSKLASYSLMPSDVTTALESQNTQVSSGQLGAQPSSNKQQL 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V  +  +                 +    +   +             +         
Sbjct: 233 VATVRSRSRL-------------QTPEQFRNIVLKSQADGSVVRLSDVARVEMGDEDYSA 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +      +       +  +   T E         R+             +      S 
Sbjct: 280 NVMANGHPASGMAIQLASGANALSTAEKVKSTIDEFRSSMPAGYEIAYPLDSTDFVKISI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV+IV+F+ +   +  L+   ++ + ++ T  +LS  G ++   ++ G
Sbjct: 340 EEVVKTLVEAVILVVIVMFVFLQNIRTTLIPTIAVPVVLLGTFGVLSFFGYSINTLTMFG 399

Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IGL VD  I+V E +      +      + +         +    +      + + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMREEGLPPREATEKSMREITGALVGIALVLSAVFLPMT 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           FF G      R F+IT+  S+++S+  A+++  A+   +++     S        F    
Sbjct: 460 FFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLLKPHNHDSGRNGFFGWFNQRY 519

Query: 536 DCIAIQF--------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           + +  ++         R+  + +   +L   C++  +         + +G I +      
Sbjct: 520 ENVQARYQRGVGKVMHRSVRYLLLYGVLLIGCAVLYMRLPTGFLPTEDQGYIMVQYQLAP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +  R     +Q    + +  +   + LV      G+          +K        
Sbjct: 580 GATENRTREVRRQVQQYFATQEKDNVNVSMLVDGFSFAGNGQNAGVGFISLKNWRDRKGS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
            ++              +    I  +
Sbjct: 640 ENSADAIAGRAMAALSRIRDAQIFVL 665



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +    +        + +        ++++    ++    +    +P 
Sbjct: 262 VRLSDVARVEMGDEDYSANVMANGHPASGMAIQLASGANALSTAEKVKSTIDEFRSSMPA 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                  +      +  I + +  ++ + I ++I +++  +     L     + + +  T
Sbjct: 322 GYEIAYPLDSTDFVKISIEEVVKTLVEAVILVVIVMFVFLQNIRTTLIPTIAVPVVLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  + FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 382 FGVLSFFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMREEGLPPREATEKSMRE 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LPM  + GS       F+I +   +V++   ++ +   +   + 
Sbjct: 440 ITGALVGIALVLSAVFLPMTFFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 8/206 (3%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY 683
             G +       + +         L         G     +L     + +  IS I + + 
Sbjct: 830  QGSAAEGKSSGDAITAMEKLAATLPAGTTFAWSGLSYQEKLSGNQALSLYGISLIVVFLC 889

Query: 684  IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +   ++ W   L  +  + L +  +L    L G+E ++    A+LT+IG S  + +++ +
Sbjct: 890  LAALYESWAVPLSVMLVVPLGVIGSLLAITLRGLENDVYFQVALLTIIGLSSKNAILIVE 949

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
               +    Y    S  +    +    L   + TS+A    VLP+A+    G +   +   
Sbjct: 950  FAEE---HYRKGESLINAAVHAATMRLRPIIMTSLAFTAGVLPLAISTGAGANSRIAIGT 1006

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYD 825
             +  G + A   +IF      + +  
Sbjct: 1007 GIIGGTLTATLLAIFFVPLFFVLVRR 1032


>gi|215486590|ref|YP_002329021.1| predicted multidrug-efflux transport protein [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215264662|emb|CAS09033.1| predicted multidrug-efflux transport protein [Escherichia coli
           O127:H6 str. E2348/69]
          Length = 1035

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFARVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     D+    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q        R        +     + L+        +  +   ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 42.0 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|154250020|ref|YP_001410845.1| protein-export membrane protein SecF [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153956|gb|ABS61188.1| protein-export membrane protein SecF [Fervidobacterium nodosum
           Rt17-B1]
          Length = 298

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 90/297 (30%), Positives = 158/297 (53%), Gaps = 10/297 (3%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           + I F+  R++ + +S +  I SI   FT G N G++F GG ++ V A++ + ++ VR  
Sbjct: 1   MKIDFVGKRYFFMALSAVLIIVSIISFFTKGFNLGLEFIGGSEIVVKASKDMTVADVRQK 60

Query: 598 LESLQIGDISFQNF-----DGEKNFLVRLQYQPGDSVAQ----TRVLEMVKKKITEIVPL 648
           + SL     + +         E +    +   P D   Q    T   +    K  E +  
Sbjct: 61  ISSLGQEFTNARILEVHALGQETDKTFSIVVAPKDEKGQLRVYTADEKAEISKKIENLLN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           + + +   +    + E+       ++ + + +L+Y+ +RFK+ F +GAI  LI D+  T+
Sbjct: 121 AKVASFNEISGDAANEIKNLTWKAIVFTLLGILVYVALRFKFSFGVGAILALIHDVIITM 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           GF+++FGIE N+ A+AA+LTL+GYSVND ++V+DR+R+             +++ SIN  
Sbjct: 181 GFYSIFGIEMNIAAIAALLTLVGYSVNDTIIVFDRIRE-FGKKFRGKDIATIVNDSINSV 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           L R++ TS+  F +VL + ++    I SFA  M  G+VV   SSIFIA+P+++    
Sbjct: 240 LVRTINTSLTTFFTVLMLLLFSTGGIKSFAFGMTIGVVVGTYSSIFIASPVVIKWVK 296


>gi|218550550|ref|YP_002384341.1| multidrug efflux system protein [Escherichia fergusonii ATCC 35469]
 gi|218358091|emb|CAQ90737.1| multidrug efflux system protein [Escherichia fergusonii ATCC 35469]
          Length = 1037

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 71/689 (10%), Positives = 183/689 (26%), Gaps = 51/689 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G+L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSISAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFESGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D I  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNIKDSISR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      I      
Sbjct: 228 QQLNASIIAQTRL-------------KDPRQFGNVTLRVNTDGSVVHLKDVARIELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +            A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDAATAIKAKLAELQPFFPQGMKVVYPYDTTPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAILLVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     ++      + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMIEDNLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVTAEHHDNKSGFFAW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + ++        + +   ++ +   +  L         + +G     
Sbjct: 515 FNRTFDHSVNHYTNSVSRIIGVTGRYLLIYVLIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G           +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKEEKANVESVFTVNGFSFSGQGQNAGMAFVSLKPWE 634

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 ++ +       +   ++    ++
Sbjct: 635 ERSGKENSAEAVISRAKQALGQIRDGFVI 663



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 93/269 (34%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +            G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPRQFGNVTLRVNTDGSVVHLKDVARIELGGENYNVIARINGKPAAGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +       ++    ++    P               +  I + +  +  + + +
Sbjct: 292 KLATGANALDAATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKLSIHEVVKTLFEAILLV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +   ++  R+  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMIEDNLPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 69/183 (37%), Gaps = 5/183 (2%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFA 693
            + +    +    L T    +  G      L       +I +S + + + +   ++ W   
Sbjct: 838  DAMALMESFATKLPTGIGYDWTGMSYQERLSGNQAPALIAVSFVVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L I   L    LF  + ++  +  +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGIVGVLLAATLFNQQNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
                 +    S+   L   + TS+A  + VLP+A+  G+        +  G++    S+ 
Sbjct: 958  G--VIEATLSSVRMRLRPILMTSLAFILGVLPLAISSGAG-SGAQNAVGIGVMGGMISAT 1014

Query: 814  FIA 816
             +A
Sbjct: 1015 LLA 1017


>gi|270264594|ref|ZP_06192859.1| toluene efflux pump membrane transporter TtgB [Serratia odorifera
           4Rx13]
 gi|270041277|gb|EFA14376.1| toluene efflux pump membrane transporter TtgB [Serratia odorifera
           4Rx13]
          Length = 1044

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 186/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAIF-----SLPVEQYPDLAPP-------------NVRISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +     +   S +     +  +TL+F           +V  
Sbjct: 50  PGASAQTLENTVTQIIEQNMTGLDNMMYMSSQSTNTGRATVTLTFEAGTDPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L    +   +  +   + ++++             + +  ++    D +   
Sbjct: 110 QLQAAIKRLPQAVQTQGVTVSKSGDTTLMMVAFVSTDGSMDKQDIADYLVSNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     TT  +       N        G     D  
Sbjct: 170 NGVGSMDVYGSQ-YAMRIWLDPNKLTSYQLTTEDVVTAIKSQNAQVAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEQFKQITLRVNQDGSLVTLGDVSTIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +   T +      A L           V          
Sbjct: 276 DFLSRYNGMQAAGMNIKLASGANELQTDQLVKDKIAELSQYFPHGLEAKVAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIKDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLPPREATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLLKPLAKGHHHGKRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A     +  +     +L +  ++  +         + +G   + V
Sbjct: 516 NRMFNRNADRYERGVARVLHFSLRYMAIYLLLLAGMALLFIKLPSSFLPQEDRGVFTVQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L      +E ++   ++ +  D    F        G+     R+   +K    
Sbjct: 576 QLPPGSTLQQTAKVVEKVEHYFLTKEQQDVLSVFSTIGAGPGGNGQNVARMFIRLKDWDL 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +T  +          ++    ++ 
Sbjct: 636 RTSGANTSFDIIERATHAFSKINEARVIA 664



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 91/241 (37%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +    +   +        + +   ++++    ++++  P 
Sbjct: 260 VTLGDVSTIELGGENYDFLSRYNGMQAAGMNIKLASGANELQTDQLVKDKIAELSQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKVAYETTPFVKASIKDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ +
Sbjct: 380 FAILSAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSSMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 76/262 (29%), Gaps = 11/262 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +   A   V  S   ++        +   N       +         
Sbjct: 776  PFRMLPGDIDKWYVRNSAGGMVPFSAFSTSHWEYGSPRLERYNGSSAVEIVGEAAEGVST 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V +  T      T  + +              +  + +  I  L    + 
Sbjct: 836  GTAMAEMEKIVSQLPTGFGLEWTAMSYQERLSGSQAP----ALYALSL-LIVFLCLAALY 890

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L +   +    L G+E ++     +LT+IG S  + +++ +   + 
Sbjct: 891  ESWSIPFSVMLVVPLGVIGAVAATWLRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE- 949

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
              L            ++    L   + TS+A    VLPM +    G     +    +  G
Sbjct: 950  --LNHKGQDLMSATLEASRMRLRPILMTSLAFIFGVLPMTISSGAGSGSQHAVGTGVMGG 1007

Query: 805  IVVAASSSIFIAAPILLFIYDW 826
            ++ A   +IF      + +   
Sbjct: 1008 MISATLLAIFFVPLFFVLVRRR 1029


>gi|262281243|ref|ZP_06059025.1| AdeY [Acinetobacter calcoaceticus RUH2202]
 gi|262257474|gb|EEY76210.1| AdeY [Acinetobacter calcoaceticus RUH2202]
          Length = 1058

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 65/554 (11%), Positives = 153/554 (27%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGIDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNTLSDSDIKDYVNSSIKEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N+       G        
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTNYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        LR        + +          
Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTADAVEHRLTELRKNYPAGLADKLAYDTTPFIRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + ++     +      +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATSRSMEQISGALIGITSVLTAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A++   A+   I++         N +   F 
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                    M   +
Sbjct: 516 RGFNNGFDRMSHSY 529



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +        L        +++     +E    ++ +  P 
Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAGGLAIKIATGANALDTADAVEHRLTELRKNYPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I   +  +I + I + I +++  + W   +     + + +  T
Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N   + A++  IG  V+D +VV + +     +            +S+ +
Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATSRSMEQ 437

Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G  +  TS+      +PMA +GG   VI   F+I +   +V++   ++     +   I
Sbjct: 438 ISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496

Query: 824 YDWRAKNA 831
                 N 
Sbjct: 497 LKQHDPNK 504



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 71/245 (28%), Gaps = 15/245 (6%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            E         +        +         S    + +E +  K+  +           + 
Sbjct: 809  EWTYGSPRLERYNGVSSVNIQGTPAPGVSSGDSMKAMEEIIAKLPSMGLQGFDYEWTGLS 868

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             +      +   +  +   I  L    +   W      +  + L I   +      G+  
Sbjct: 869  LEERESGAQAPFLYALSLLIVFLCLAALYESWSIPFSVLLVVPLGIIGAI-ILTYLGMII 927

Query: 719  --------NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                    N+    A++ +IG S  + +++ +  ++   L        D    +    L 
Sbjct: 928  KGDPNLSNNIYFQVAMIAVIGLSAKNAILIVEFAKE---LQEKGEDLIDATLHASKMRLR 984

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T++A    VLP+A+    G     S    +  G++ A    IF      ++I    
Sbjct: 985  PIIMTTLAFGFGVLPLALSTGAGAGSQHSVGYGVLGGVLSATFLGIFFIPVFYVWIRSIF 1044

Query: 828  AKNAR 832
                +
Sbjct: 1045 KYKPK 1049


>gi|237745456|ref|ZP_04575936.1| acriflavin resistance transmembrane protein [Oxalobacter formigenes
           HOxBLS]
 gi|229376807|gb|EEO26898.1| acriflavin resistance transmembrane protein [Oxalobacter formigenes
           HOxBLS]
          Length = 1066

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 75/614 (12%), Positives = 167/614 (27%), Gaps = 50/614 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L  L        + ++P+  P               + + V  
Sbjct: 8   RPIFAWVIAIFITLAGILSIL-----NLPVSQYPNVAPP-------------QVTVTVTY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  ++      +   +             R     ITLSF      E  A  V   
Sbjct: 50  PGATAKTVEDSVIQIIEQEMNGATGLQYFESESRTGAGSITLSFTPDTDVELAAVDVLNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V S+L     +  +     +   + +            I+    + R  + +I    
Sbjct: 110 LKRVESRLPEAVMQQGVNINKSRSNFLAIVSLISTDGRMDRIDLGDYVYRNVLYEIKRLP 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP +L  L  T   ++      N               ++ 
Sbjct: 170 GVGDATVFGS-EKAMRVWIDPIKLTGLNLTAGDVANAIRNQNTVVTSGAIANPPNTGAET 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V    ++                 +    +                 I        
Sbjct: 229 FTANVNVHGQL-------------QTVEEFENIVLRANTDGSVVRLKDVARIELGGQSYD 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L    ++       A  +    +++       L           +E         S
Sbjct: 276 TYARLNGNPVSGFGVQPTATANTMAVMQSIRDKMEELSQYFPEGVTYSIENDTSKFVSAS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV I++++ +   ++ ++    + + ++ T A++  LG ++ + ++ 
Sbjct: 336 IHEVIKTLFEGIFLVFIIMYLFLQNFRYTIIPTIVVPIALLGTFAVMKALGFSINMLTMF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ +D  I+V E +      +  S   +      +    I   +       + +
Sbjct: 396 GMVLSIGILIDDAIVVVENVERIMAEEGLSPRDATYKAMGQITGAIIGISTVLTAVFIPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSID 524
            FF G      R F+ITM  S++ S F A+S+  A+   I           +       +
Sbjct: 456 AFFSGSVGAIYRQFSITMVASMIFSAFLALSLTPALCATILKPIDPNAHSEKRGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               S        ++  F +   + +    +    +             + +G +   V 
Sbjct: 516 RRFHSMTLTYERQVSKMFGKTMRYMLIYGAIVLCAAFMFWKLPTSFLPNEDQGYVYTNVQ 575

Query: 585 ANRPVDLSVVRSNL 598
                  +     L
Sbjct: 576 LPAGATQARTLETL 589



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 87/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q  D   +      +          +++A  + +    +++++  P 
Sbjct: 259 VRLKDVARIELGGQSYDTYARLNGNPVSGFGVQPTATANTMAVMQSIRDKMEELSQYFPE 318

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               + E    K     I + I  +      + I +++  + + + +     + + +  T
Sbjct: 319 GVTYSIENDTSKFVSASIHEVIKTLFEGIFLVFIIMYLFLQNFRYTIIPTIVVPIALLGT 378

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  ++D +VV + +     +    +S RD   K++ +
Sbjct: 379 FAVMKALGFSINMLTMFGMVLSIGILIDDAIVVVENV--ERIMAEEGLSPRDATYKAMGQ 436

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +  S       +PMA + GSV      F+I M   ++ +A  ++ +   +
Sbjct: 437 ITGAIIGISTVLTAVFIPMAFFSGSVGAIYRQFSITMVASMIFSAFLALSLTPAL 491



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 80/227 (35%), Gaps = 11/227 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S   S    +   Q         +R+   P +  +    +  +   + +I      + T 
Sbjct: 796  SAFTSTAWNNGPIQLIRYNGYPAMRITGAPAEGYSTGDAMNEMVSLMQQIPEGFGYEWTG 855

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                + +       +  +  S +A+ + +   ++      A+  L++ +        +F 
Sbjct: 856  QSLEEQASGSQAPMLYAL--SLLAVFLCLAALYESTSIPVAVL-LVVPLGVIGALIGVFI 912

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+  ++     ++  IG S  + +++ +  +    L            +++       +
Sbjct: 913  RGMPNDVYFKVGLIATIGLSAKNAILIVEFAKD---LQAQGKGLIRSTLEAVRLRFRPII 969

Query: 774  YTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAA 817
             TS+A  + V+P+A+  G+      +    + FG++ A   +++   
Sbjct: 970  MTSLAFILGVVPLAIASGAGSAAQRAIGTGVLFGMITATVLAVYFVP 1016


>gi|283784288|ref|YP_003364153.1| acriflavin resistance protein B [Citrobacter rodentium ICC168]
 gi|282947742|emb|CBG87297.1| acriflavin resistance protein B [Citrobacter rodentium ICC168]
          Length = 1049

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 67/690 (9%), Positives = 175/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTIAATY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDTISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+ L     T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPTALNNYQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSQVRLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T          +          +           
Sbjct: 276 DVIAKFNGQPASGLGIKLATGANALDTASAIRAELVKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + +   I+    +   +         + +G     
Sbjct: 516 FNRMFDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAFLFVRLPSSFLPDEDQGVFLSM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                       +  L+ +    ++ +  + E  F V      G           +K   
Sbjct: 576 AQLPAGATQERTQKVLDEMTDYFLTKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWG 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++           ++    +  
Sbjct: 636 ERPGDENKVEAITQRASAAFSQIKDAMVFA 665



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +     K+    
Sbjct: 258 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTASAIRAELVKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|104780222|ref|YP_606720.1| preprotein translocase subunit SecD [Pseudomonas entomophila L48]
 gi|95109209|emb|CAK13906.1| preprotein translocase membrane subunit SecD [Pseudomonas
           entomophila L48]
          Length = 620

 Score =  198 bits (502), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 166/525 (31%), Positives = 271/525 (51%), Gaps = 41/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD D  +   +++Y  E+++ L+KE +
Sbjct: 106 NLAQTTPQWLRSLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERV 165

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q    I L FAD   +E     +             D             + + 
Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFN--------DFDLTTTERNELAVLRLA 217

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F       + K       F     G    VE  + I+G  +  A A+FD    
Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAAVERGLIITGDQVTDAQASFDEHG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+I  D  G       TR N+G+ +AV+   +      +                  
Sbjct: 335 RPQVNIRLDGHGGELMSRATRTNVGRSMAVIFIEQKPVTRYVKQTVDGVEKEVAVQTFQE 394

Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+I +Y  +G++A  ++  N++L LAL+SLLGATLTLP IAG
Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRGFGVLATIALAGNMVLLLALMSLLGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     SV  ++  GF+RAYS I D+N+T L+   +LF 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G G V+GFA+TM L I  SMFTA+ + RA++      + +K + 
Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKLW 619



 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 88/250 (35%), Gaps = 5/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +     V +         +    +    ++ L       G +         +  +
Sbjct: 372 VTRYVKQTVDGVEKEVAVQTFQEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   ++  F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-GFGVLATIALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      +S +  I
Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820
            +  N      V  ++   +    +   G   +  FA+ M+ GI  +  +++ +   ++ 
Sbjct: 548 HEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVN 607

Query: 821 LFIYDWRAKN 830
           L       K 
Sbjct: 608 LTCGGRDIKK 617



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 32/121 (26%), Gaps = 17/121 (14%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  ++  +G + + PN  P     +   A     +S             + D
Sbjct: 4   KYPLWKYLLIVVVLAVGFIYSAPNLYPDDPAVQISGASSALHVS-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117
            D                 L ++G  +  +   ++++        A         +    
Sbjct: 51  LDRVTKALTDAGITVKGGSLGEKGSALVRLTNQEDQLPAKDVARKALGDDYVVALNLAQT 110

Query: 118 F 118
            
Sbjct: 111 T 111


>gi|114046586|ref|YP_737136.1| preprotein translocase subunit SecD [Shewanella sp. MR-7]
 gi|113888028|gb|ABI42079.1| protein-export membrane protein SecD [Shewanella sp. MR-7]
          Length = 624

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 163/532 (30%), Positives = 276/532 (51%), Gaps = 35/532 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  +++ P  L  +++   PS +       I LGLDLRGG   +L+VD          
Sbjct: 105 TLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQAG 164

Query: 72  MYSDELRSFLKKEGIGVFSMRQI------QNKITLSFADSRFKENIADKVTLFLQGVNSK 125
              + LR FL+++ I   S+R          +I ++F           + T   +    +
Sbjct: 165 ALVESLRQFLREQQIRGASVRIDSTRDDAGGQIAIAFN-------AVAESTNNARSTIRQ 217

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                     +T  +  + + L+Q    ++ +  ++Q+++I+R RI+++GI+E+ +QR G
Sbjct: 218 FMQQSCPTWQLTNADNGLVVKLAQEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
            HRI I+LPG QDP+  + ++G TA ++F +V             + L+D  GN   V  
Sbjct: 278 EHRIRIELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAQVLKDKSGNPVYVAR 332

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
              + G H+  A AN         V+I  D +G ++  E +R NIGKP+A          
Sbjct: 333 TPVLGGDHIVDARANIGEMGM-AEVNIHLDRIGGQKMSEFSRANIGKPMATSYSEYSRDE 391

Query: 306 P------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                           Q+    + +I+G  T + A  LA +LRAGS+   + IVEER +G
Sbjct: 392 QGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIG 451

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATL 412
             LG+++I  G  A+  G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A L
Sbjct: 452 PTLGAENIQNGFAALGLGMGITLLFMALWYRRLGWVANVALIANMVILFGLLALIPGAVL 511

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAG+VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STIFD+N T +I
Sbjct: 512 TLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMI 571

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
             VVL+  G G ++GFA+T+GL +L SMFT I   RA++  +      + + 
Sbjct: 572 TAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVR 623



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 93/260 (35%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    + +          +    ++ L       G    Q
Sbjct: 365 GQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 424

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I+ G   + +     L+++ + ++  
Sbjct: 425 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALWYR-R 483

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 484 LGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 543

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID   +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 544 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 600

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  ++  +Y   A+ 
Sbjct: 601 TGIFASRALINLVYGRDARR 620


>gi|146310603|ref|YP_001175677.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Enterobacter
           sp. 638]
 gi|145317479|gb|ABP59626.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter sp. 638]
          Length = 1049

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 70/686 (10%), Positives = 177/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                V    +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAV---------SITAVYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + + K      +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDKLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVIAAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +          +           S   
Sbjct: 280 KFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPSGLKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSIFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGENKKGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D I         + +   I+    +   +         + +G         
Sbjct: 520 FDKSTNHYTDSIGGILRSTGRYLLLYIIIVVGMAFLFVRLPSSFLPDEDQGVFLTMAQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGASQERTQKVLDEVTDYYLTKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERSG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++           ++    +  
Sbjct: 640 DENKVEAITGRAMGTFSQIKDAMVFA 665



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKVELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSIFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMNLMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 959  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMITATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|296536039|ref|ZP_06898178.1| protein-export membrane protein SecF [Roseomonas cervicalis ATCC
           49957]
 gi|296263645|gb|EFH10131.1| protein-export membrane protein SecF [Roseomonas cervicalis ATCC
           49957]
          Length = 318

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 142/307 (46%), Positives = 196/307 (63%), Gaps = 2/307 (0%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                 F L+PD  AI FM+ R  G+  S L S+ SI L F  GL  GIDF+GGI + + 
Sbjct: 2   FLSRPLFRLVPDNTAIPFMKGRVLGLIFSALLSLLSIGLAFYPGLEKGIDFRGGIIMEIR 61

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              P +L+ +RS    L +GD+  Q F      L+RL  Q GD  A    +  ++  + E
Sbjct: 62  TPGPANLAAIRSAASGLNLGDVGVQEFGDASTVLLRLPVQ-GDEAATQTAVNRIRGVLEE 120

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             P + +  TE VG ++S EL +  ++ + +S +AM+ YIW RF+W FA+GAI TL+L+ 
Sbjct: 121 AAPGARLLRTEAVGNRVSAELFQGSLIALGLSMLAMMAYIWFRFEWQFAVGAIATLLLET 180

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           TK +GF A+  IEF+LT VAAVLT+IG+S+NDKVVVYDRMR+N++ Y  ++  R LIDKS
Sbjct: 181 TKLVGFLAVTRIEFSLTTVAAVLTIIGFSINDKVVVYDRMRENLRKY-KTMPLRQLIDKS 239

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           INETL R+V TS+   +S LP+A++GG  +  FA  M FGIV + SSSIFIAAPILLF+ 
Sbjct: 240 INETLNRTVGTSLTLLLSSLPLALFGGDALSGFAWTMLFGIVASTSSSIFIAAPILLFLG 299

Query: 825 DWRAKNA 831
           + R +  
Sbjct: 300 ENRLRRN 306


>gi|117623550|ref|YP_852463.1| acriflavine resistance protein B [Escherichia coli APEC O1]
 gi|115512674|gb|ABJ00749.1| acriflavine resistance protein B [Escherichia coli APEC O1]
          Length = 1035

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------VSATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q        R        +     + L+        +  +   ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 42.0 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|291618351|ref|YP_003521093.1| AcrD [Pantoea ananatis LMG 20103]
 gi|291153381|gb|ADD77965.1| AcrD [Pantoea ananatis LMG 20103]
          Length = 1066

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 186/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  +        ++++P   P              ++ +    
Sbjct: 36  RPIFAWVLAILLCLCGTLAII-----SLPVEQYPDLAPP-------------NVRITATY 77

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q +ITL+F      +    +V  
Sbjct: 78  PGASAQTLENTVTQVIEQNMTGIDNLMYMSSNSSNTGQAQITLTFTAGTNPDEARQQVQN 137

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L    +   +      + +I++          +  + +  +     + +   
Sbjct: 138 QLQSALRQLPQPVQSQGVTVNKTGDSNILMVAFVSTDGSMNKQDIADYVASNIQEPLSRI 197

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L     TT  +       N        G     ++ 
Sbjct: 198 DGVGEVDAYGTQ-YAMRIWLDPYKLTAYALTTDDVVNAIKSQNTQVAVGQVGGLPAVNNQ 256

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 257 ALNATVNAQAML-------------QTPDQFKAITLKNNPDGSVVTLGDVATVALGAEKY 303

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 304 DSLSRYNGQSASGLGIKLASGANEMNTDKLVRARLDELSHYFPHGLEAKIAYETTPFVKA 363

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV  V+++ +   +  L+   ++ + ++ T  ++   G ++   ++
Sbjct: 364 SITDVVKTLLEAILLVFGVMYLFMQNFRATLIPTIAVPVVLLGTFCVIFAFGYSINTLTM 423

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 424 FAMVLAIGLLVDDAIVVVENVERIMSEEGISPRAATRKSMGQIQGALVGIALVLSAVFIP 483

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++++S+  A+ +  A+   +                +  
Sbjct: 484 MAFFGGTVGAIYRQFSVTIVSAMILSVLVAMILTPALCATLLKPIAKGEHHGERGFFRWF 543

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +           +A        W +    +  I +   L         + +G I   V
Sbjct: 544 NHHFNRNADRYQRGVAHILRTGGRWLLLYVGIIGIMAFLFLHLPSSFLPREDRGMILTQV 603

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  ++   + +  ++   ++ +  +    F        G+     R+   +K    
Sbjct: 604 QLPAGSSMNQTSAVVAKVEKYYLTKEKDNVLSVFSTIGSGPGGNGQNVARLFIRLKDWGD 663

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 T         K  + +    ++ 
Sbjct: 664 RPGADRTSFAIIKRAGKAFKHINEATVIA 692



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +   +++     +++   P 
Sbjct: 288 VTLGDVATVALGAEKYDSLSRYNGQSASGLGIKLASGANEMNTDKLVRARLDELSHYFPH 347

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + +   +++  + +   L     + + +  T
Sbjct: 348 GLEAKIAYETTPFVKASITDVVKTLLEAILLVFGVMYLFMQNFRATLIPTIAVPVVLLGT 407

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    IS R    KS+ +
Sbjct: 408 FCVIFAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGISPRAATRKSMGQ 465

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +G   G++   F++ +   ++++   ++ +   +   + 
Sbjct: 466 IQGALVGIALVLSAVFIPMAFFGGTVGAIYRQFSVTIVSAMILSVLVAMILTPALCATLL 525

Query: 825 D 825
            
Sbjct: 526 K 526



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 57/543 (10%), Positives = 142/543 (26%), Gaps = 42/543 (7%)

Query: 325  IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV--- 381
            I                   N   +R                 +  G++ I+ F+ +   
Sbjct: 528  IAKGEHHGERGFFRWFNHHFNRNADRYQRGVAHILRTGGRWLLLYVGIIGIMAFLFLHLP 587

Query: 382  --------LYGKWGLVADFSIFLNVILTLAL-----LSLLGATLTLPSIAGIVLGIGLAV 428
                           V   +       +  +       L      + S+   +       
Sbjct: 588  SSFLPREDRGMILTQVQLPAGSSMNQTSAVVAKVEKYYLTKEKDNVLSVFSTIGSGPGGN 647

Query: 429  DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
              N+       ++         +      RA       N   +IA+      G G+  GF
Sbjct: 648  GQNVARLFIRLKDWGDRPGADRTSFAIIKRAGKAFKHINEATVIASSPPAITGLGSSSGF 707

Query: 489  AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
             +     I          + AM   ++       +              + I     +  
Sbjct: 708  DL----EIQDHGGIGHDKLMAMRDMLLDKASKDKLLSRVRHNGLDDSPQLQIDIDERKAQ 763

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV--------------DLSVV 594
             +G+S+     ++   +          +G ++   +                   + S  
Sbjct: 764  ALGVSLDTINDTLATAWGSSYVNDFLDRGRVKKVYVQADAPYRMLPGDVDKWYVRNSSGT 823

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                 +         +   E+          G++         + +    +  L      
Sbjct: 824  MVPFSAFATSRWQTGSPRLERYNGYSSLEIVGEAAEGVSSGTAMNEMEKLVESLPLGVGF 883

Query: 655  EIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
            +  G      L       + ++S + + + +   ++ W      +  + L +   L    
Sbjct: 884  QWTGASYQERLSGSQAPALYVVSLLVVFLCLAALYESWSIPFSVMLVVPLGVIGALIATW 943

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              G+E ++     +LT++G S  + +++ +   +   L +      +    +  + L   
Sbjct: 944  TRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---LNSKGGELIESTLAASRQRLRPI 1000

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + TS+A    VLPMA+    G     S    +  G++ A   +I       + +      
Sbjct: 1001 LMTSLAFIFGVLPMAISSGAGSGSQHSVGTGVMGGMISATILAILFVPLFFVLVRRRFPL 1060

Query: 830  NAR 832
              +
Sbjct: 1061 KEK 1063


>gi|238799347|ref|ZP_04642786.1| Acriflavine resistance protein B [Yersinia mollaretii ATCC 43969]
 gi|238716797|gb|EEQ08674.1| Acriflavine resistance protein B [Yersinia mollaretii ATCC 43969]
          Length = 1039

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 69/556 (12%), Positives = 155/556 (27%), Gaps = 46/556 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIIMCLTGALAI-----STLPIEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTDPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + ++++             + +  +     D +   
Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT  +       N+       G     D+ 
Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDVVTAIQSQNSQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T        A L           +          
Sbjct: 276 DYLSRFNGQAASGMSVKLASGANELQTDALVKARLAELAPFFPHGLEAKIAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++
Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSVFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+         +K I          
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIKPGHHHAKRG 510

Query: 534 IPDCIAIQFMRARFWG 549
                   F R+    
Sbjct: 511 FFGWFNRMFDRSAHRY 526



 Score = 85.9 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/482 (10%), Positives = 140/482 (29%), Gaps = 25/482 (5%)

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                   + G + I    I  Y                 +   L      +   S+ G+
Sbjct: 13  WVLAIIMCLTGALAISTLPIEQYPNLAPPNVRISASYPGASAQTLENTVTQVIEQSMTGL 72

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              + ++  S+   +  I    +       ++    ++  S I           V +   
Sbjct: 73  DNLLYMSSQSSNSGSASITLTFQAGTDPNEAMQQVQNQLQSAIKKLPQDVQQQGVSVSKS 132

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G   +   A       +     A  +   +   + R + + SID         I      
Sbjct: 133 GDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRIEGVGSIDAFGSQYAMRIWLDPNK 192

Query: 541 ----------------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                                   G                 +  +     +   ++ + 
Sbjct: 193 LNNYQLTTQDVVTAIQSQNSQIAVGQLGGTPSVDNQALNATINAQSQLQTPEQFREITLR 252

Query: 585 ANRP---VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            N+    V L  V       +  D   +      + +        + +    +++    +
Sbjct: 253 VNQDGSLVTLGDVAKIELGAEKYDYLSRFNGQAASGMSVKLASGANELQTDALVKARLAE 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           +    P               +  I+  +  ++ + + + + +++  + +   L     +
Sbjct: 313 LAPFFPHGLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAV 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T    ++FG   N   + A++  IG  V+D +VV + +     +    +  R+ 
Sbjct: 373 PVVLLGTFAILSVFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             KS+ +  G  V  ++      +PMA +GG+       F+I +   +V++   ++ +  
Sbjct: 431 TRKSMGQIQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTP 490

Query: 818 PI 819
            +
Sbjct: 491 AL 492



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 66/177 (37%), Gaps = 8/177 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L +      +   ++  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNSKGKDLVEATLEASRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               + TS+A    VLPM +    G     +    +  G++ A   +IF      + +
Sbjct: 970  RPILMTSLAFIFGVLPMTISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLV 1026


>gi|218660141|ref|ZP_03516071.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           etli IE4771]
          Length = 314

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 172/317 (54%), Positives = 237/317 (74%), Gaps = 3/317 (0%)

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
           M L ++ISMFT+++ VR  MI I R +K K ++I PL  F   P    IQFM+ARF+GV 
Sbjct: 1   MALGLIISMFTSVAFVRVAMIEITRRRKFKVLNIRPLIPFS--PYDKHIQFMKARFFGVT 58

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
           +S L SI S+ L    GLNYG+DF+GGIQ+ V      DL+  R  L+SL +G+I+ Q+F
Sbjct: 59  VSALLSIASVALFIYPGLNYGVDFRGGIQMSVKTQGTADLAKFREGLDSLGLGEITLQSF 118

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            G  + LVR Q Q G   AQT  +  +K ++ +I P +T++ T+++GPK+S EL   GI+
Sbjct: 119 GGNNSILVRAQRQEGGEEAQTAAVTKLKAEVAKIDPTATVEGTDVIGPKVSGELASAGIL 178

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V+I+++AMLIYIW+RF+W FA+GAI TL+LD+TK +GFFA+ G++FNLTA+AA+LTL+G
Sbjct: 179 SVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTKAIGFFAITGLDFNLTAIAAILTLVG 238

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           YSVNDKVVVYDRMR+NM+LY  S+  R++IDKSINETL RS+YT+  AF++++PMA+WGG
Sbjct: 239 YSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSINETLARSLYTNATAFLALVPMAIWGG 297

Query: 792 SVIGSFAIPMAFGIVVA 808
           S + SFAIPM FGI+VA
Sbjct: 298 SAVSSFAIPMVFGILVA 314


>gi|124265471|ref|YP_001019475.1| preprotein translocase subunit SecF [Methylibium petroleiphilum
           PM1]
 gi|124258246|gb|ABM93240.1| protein translocase subunit secF [Methylibium petroleiphilum PM1]
          Length = 344

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 96/327 (29%), Positives = 160/327 (48%), Gaps = 26/327 (7%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FM+       +S +    ++  L T GL+  I+F GG  L V   +  D
Sbjct: 1   MEFFRIKRDIPFMKHALIFNVVSFVTFAAAVFFLVTRGLHLSIEFTGGTVLEVEYAKTAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VRS +E+L  G++  QNF   ++ LVRL  +      +            E   ++ 
Sbjct: 61  VPKVRSAVEALGFGEVQVQNFGTSRDVLVRLPLRGDVKQQEVVGRVFSALCAAEGGQVTQ 120

Query: 651 IQ-------------------------NTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
            Q                          +E VGP++ +EL   G + +    I ++IY+ 
Sbjct: 121 SQSVSDKGESVSAQVCDAGGAQPVMLKRSEFVGPQVGKELATDGAMALGFVVIGIMIYLA 180

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           IRF+W FA+ AI   + D+   LGFFA F  EF+L+ +AAVL ++GYSVN+ VV++DR+R
Sbjct: 181 IRFEWKFAVAAIVANLHDVIIILGFFAFFQWEFSLSVLAAVLAVLGYSVNESVVIFDRIR 240

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +  + Y   ++   +ID +I  T+ R++ T  +  + VL M V+GG+ +  FA+ +  GI
Sbjct: 241 EAFRRYRK-MNTHQVIDHAITSTMSRTIITHGSTQMMVLSMLVFGGATLHYFAVALTIGI 299

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           +    SS+F+AA I +++   R    +
Sbjct: 300 LFGIYSSVFVAAAIAMWLGVKREDLMK 326


>gi|327393533|dbj|BAK10955.1| acriflavine resistance protein B AcrB [Pantoea ananatis AJ13355]
          Length = 1053

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 74/686 (10%), Positives = 191/686 (27%), Gaps = 42/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   G+L           + ++P   P          +          
Sbjct: 8   RRPVFAWVIALCIMLFGILSI-----RSLPVAQYPDVAPP---------QISIQATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK--ITLSFADSRFKENIADKVTLFL 119
             + +   +    ++  + L        +      +  I ++F      +    +V   +
Sbjct: 54  SAETLESSVTQVIEQQLTGLDGLLYFSSTSTASTGQVKINVTFKQGTDPDIAQVQVQNKV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q   S+L        +     +   +++         S A + +  ++    D +     
Sbjct: 114 QQAESRLPSAVTSQGVTVQKAQSDFLLILAVYDKSNKSSASDVADYMVSNMEDTLARVTG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DPS+L       + ++      N        G +   ++   
Sbjct: 174 VGNVQVFGA-EYAMRIWLDPSKLASYSLMPSDVTTALESQNTQVSSGQLGAQPSSNTQQL 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V  +  +                 +    +   +             +         
Sbjct: 233 VATVRSRSRL-------------QTPEQFRNIVLKSQADGSVVRLSDVARVEMGDEDYSA 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +      +       +  +   T E         R+             +      S 
Sbjct: 280 NVMANGHPASGMAIQLASGANALSTAEKVKSTIDEFRSSMPAGYEIAYPLDSTDFVKISI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV+IV+F+ +   +  L+   ++ + ++ T  +LS  G ++   ++ G
Sbjct: 340 EEVVKTLVEAVILVVIVMFVFLQNIRTTLIPTIAVPVVLLGTFGVLSFFGYSINTLTMFG 399

Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IGL VD  I+V E +      +      + +         +    +      + + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMREEGLPPREATEKSMREITGALVGIALVLSAVFLPMT 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           FF G      R F+IT+  S+++S+  A+++  A+   +++     S        F    
Sbjct: 460 FFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLLKPHNHDSGRNGFFGWFNQRY 519

Query: 536 DCIAIQF--------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           + +  ++         R+  + +   +L   C++  +         + +G I +      
Sbjct: 520 ENVQARYQRGVGKVMHRSVRYLLLYGVLLIGCAVLYMRLPTGFLPTEDQGYIMVQYQLAP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +  R     +Q    + +  +   + LV      G+          +K        
Sbjct: 580 GATENRTREVRRQVQQYFATQEKDNVNVSMLVDGFSFAGNGQNAGVGFISLKNWRDRKGS 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
            ++              +    I  +
Sbjct: 640 ENSADAIAGRAMAALSRIRDAQIFVL 665



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +    +        + +        ++++    ++    +    +P 
Sbjct: 262 VRLSDVARVEMGDEDYSANVMANGHPASGMAIQLASGANALSTAEKVKSTIDEFRSSMPA 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                  +      +  I + +  ++ + I ++I +++  +     L     + + +  T
Sbjct: 322 GYEIAYPLDSTDFVKISIEEVVKTLVEAVILVVIVMFVFLQNIRTTLIPTIAVPVVLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  + FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 382 FGVLSFFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMREEGLPPREATEKSMRE 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LPM  + GS       F+I +   +V++   ++ +   +   + 
Sbjct: 440 ITGALVGIALVLSAVFLPMTFFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 74/206 (35%), Gaps = 8/206 (3%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY 683
             G +       + +         L         G     +L     + +  IS I + + 
Sbjct: 830  QGSAAEGKSSGDAITAMEKLAATLPAGTTFAWSGLSYQEKLSGNQALSLYGISLIVVFLC 889

Query: 684  IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +   ++ W   L  +  + L +  +L    L G+E ++    A+LT+IG S  + +++ +
Sbjct: 890  LAALYESWAVPLSVMLVVPLGVIGSLLAITLRGLENDVYFQVALLTIIGLSSKNAILIVE 949

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
               +    Y    S  +    +    L   + TS+A    VLP+A+    G +   +   
Sbjct: 950  FAEE---HYRKGESLINAAVHAATMRLRPIIMTSLAFTAGVLPLAISTGAGANSRIAIGT 1006

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYD 825
             +  G + A   +IF      + +  
Sbjct: 1007 GIIGGTLTATLLAIFFVPLFFVLVRR 1032


>gi|299768952|ref|YP_003730978.1| AcrB protein [Acinetobacter sp. DR1]
 gi|298699040|gb|ADI89605.1| AcrB protein [Acinetobacter sp. DR1]
          Length = 1058

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 66/554 (11%), Positives = 154/554 (27%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGIDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNTLSDSDIKDYVNSSIKEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N+       G        
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTNYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A LR        + +          
Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTADAVEHRLAELRKNYPTGLADKLAYDTTPFIRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + ++     +      +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATSRSMQQISGALIGITSVLTAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A++   A+   I++         N +   F 
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKEPSNNIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                    M   +
Sbjct: 516 RGFNNGFDRMSHSY 529



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +        L        +++     +E    ++ +  P 
Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAGGLAIKIATGANALDTADAVEHRLAELRKNYPT 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I   +  +I + I + I +++  + W   +     + + +  T
Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N   + A++  IG  V+D +VV + +     +            +S+ +
Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATSRSMQQ 437

Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G  +  TS+      +PMA +GG   VI   F+I +   +V++   ++     +   I
Sbjct: 438 ISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496

Query: 824 YDWRAKNA 831
                 N 
Sbjct: 497 LKQHDPNK 504



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 75/232 (32%), Gaps = 17/232 (7%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-- 672
                             +       ++I   +P   +Q  +     +S E    G     
Sbjct: 821  NGVSSVNIQGTPAPGVSSGDSMKAMEEIIAKLPSMGLQGFDYEWTGLSLEERESGAQAPF 880

Query: 673  -VIISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALF-----GIEFNLTAV 723
               +S + + + +   ++     F++  +  L +     L +  +       +  N+   
Sbjct: 881  LYALSLLIVFLCLAALYESWSIPFSVLLVVPLGIIGAIVLTYLGMIIKGDPNLSNNIYFQ 940

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             A++ +IG S  + +++ +  ++   L        +    +    L   + T++A    V
Sbjct: 941  VAMIAVIGLSAKNAILIVEFAKE---LQEKGEDLLEATLHASKMRLRPIIMTTLAFGFGV 997

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            LP+A+    G     S    +  G++ A    IF      ++I        +
Sbjct: 998  LPLALSTGAGAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSIFKYKPK 1049


>gi|288942522|ref|YP_003444762.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Allochromatium vinosum DSM 180]
 gi|288897894|gb|ADC63730.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Allochromatium vinosum DSM 180]
          Length = 1047

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 79/682 (11%), Positives = 181/682 (26%), Gaps = 40/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL           + ++PS  P                      
Sbjct: 8   RPVFAWVIAIVIMLAGLLSI-----RILPVSQYPSIAPPAI---------AISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        +      + ITL+F +    +    +V   LQ 
Sbjct: 54  AQTVEDSVTQVIEQQMNGLDGLRYMSSTSESNGLSTITLTFENGVDPDVAQMQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            N+ L  +  +  +         +++             +          D I       
Sbjct: 114 ANALLPEEVVRQGIQVAKSVRNFLMVVAFVSRDGSLTNADLGDYAASLVKDPISRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP+RL Q   T + +       N        G            
Sbjct: 174 EITLFEAQ-YAMRIWLDPNRLNQYGLTPSDVVAAIEAENAQVSAGQLGAIPSPQGQQLNV 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +        +             I           
Sbjct: 233 TVNVQSRL-------------NTPDEFGAIRLRTQADGSTVHLRDVARIELGSESYGKMA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +        L A   P    +           S   
Sbjct: 280 RHNGSPAAGMAIRLATGANALQTADAVKAKITELSAFFPPGMEAVFPYDTTPFVRISIGE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++  +V
Sbjct: 340 VVKTIFEAVILVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGILAAFGFTINTLTLFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +        +      +  S +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEDGLPPKEATRKSMDQITSALVGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++L+S+  A+++  A+   +++                     
Sbjct: 460 GGSTGVIYRQFSITIVSAMLLSVVVALTLSPALAASLLKPMPHGPRRGFFGWFNRNFERS 519

Query: 538 IAIQ------FMRARFWGVGISILFSICSICL-LFTHGLNYGIDFKGGIQLGVLANRPVD 590
           +++         R R+  +G+ ++     + L           + +G + +         
Sbjct: 520 VSVYGKSVAGITRRRWIFLGVYLILVGALVVLHERMTTSFLPDEDQGILIIQATLPSGAT 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L   R  L+ ++   +  +    ++   V      G           ++       P   
Sbjct: 580 LERTREVLKQVEKHFLENEKEAVKELITVSGFSFAGQGQNMAIGFVKLRDWSERQRPDLH 639

Query: 651 IQNTEIVGPKISRELIRKGIVG 672
           ++            +    +  
Sbjct: 640 VKAVAGRAMMAFSRIRDARVFA 661



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 98/283 (34%), Gaps = 6/283 (2%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
             G   S      ++ +     LN   +F             V L  V       +    
Sbjct: 218 QLGAIPSPQGQQLNVTVNVQSRLNTPDEFGAIRLRTQADGSTVHLRDVARIELGSESYGK 277

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             ++       +        +++     ++    +++   P               R  I
Sbjct: 278 MARHNGSPAAGMAIRLATGANALQTADAVKAKITELSAFFPPGMEAVFPYDTTPFVRISI 337

Query: 667 RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            + +  +  + I + + +++  + +   L     + + +  T G  A FG   N   + A
Sbjct: 338 GEVVKTIFEAVILVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGILAAFGFTINTLTLFA 397

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  IG  V+D +VV + +     ++   +  ++   KS+++     V  ++      +P
Sbjct: 398 MVLAIGLLVDDAIVVVENV--ERVMHEDGLPPKEATRKSMDQITSALVGIALVLSAVFVP 455

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           MA +GGS       F+I +   ++++   ++ ++  +   +  
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMLLSVVVALTLSPALAASLLK 498



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 52/163 (31%), Gaps = 11/163 (6%)

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG--IEFNLTAVAAV 726
             +  +  + +  L    +   W         L++ I       A  G  +  ++     +
Sbjct: 870  ALYALS-ALVVFLALAALYESWSVPFA--VMLVVPIGVLGAVVAALGRGLPSDIYFQVGL 926

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            L  IG S  + +++ +  +    L            ++    +   V TS+A    VLP+
Sbjct: 927  LATIGLSAKNAILIVEFAK---TLQEEGRDALSAALEAARMRIRPIVMTSLAFGFGVLPL 983

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            A+    G     +    +  G+V A    +       + I   
Sbjct: 984  ALGTGAGSGGQNAIGTGVLGGVVAATMLGVLFVPLFFVLIRGR 1026


>gi|77460839|ref|YP_350346.1| preprotein translocase subunit SecF [Pseudomonas fluorescens Pf0-1]
 gi|77384842|gb|ABA76355.1| protein-export membrane protein SecF [Pseudomonas fluorescens
           Pf0-1]
          Length = 304

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 92/286 (32%), Positives = 163/286 (56%), Gaps = 5/286 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R +  G+++  ++ +I  +F  G+N+G+DF GG  + +   RP D++ VR  
Sbjct: 3   RTINFMGVRNFAFGVTVFLTLLAIFSVFHKGMNWGLDFTGGTLIELTYERPADVTKVREQ 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L +    +   QNF    + LVR+  +      Q                 +T++  E V
Sbjct: 63  LVTSGYHEAVVQNFGATTDLLVRMPGEDPQLGHQVAEALQRV----GGDNPATVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLLALGGILIYLAFRFQWKFAVGAIVSLIHDVIVTIGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ASLIENINISTTQTLLRTMATSI 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  +++  +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 238 STLLAIAALLFFGGDNLFGFSIALFIGVLAGTYSSIYIANVVLIWL 283


>gi|260549288|ref|ZP_05823508.1| AdeE protein [Acinetobacter sp. RUH2624]
 gi|260407694|gb|EEX01167.1| AdeE protein [Acinetobacter sp. RUH2624]
          Length = 1037

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 81/645 (12%), Positives = 191/645 (29%), Gaps = 47/645 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I  +G +  L        ++++P   P            G ++    + 
Sbjct: 9   RPIFAWVLSICIMALGTISIL-----TLPIEQYPDIAPP-----------GVNVT--ANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   +K           S    Q +I+LSF      +    +V  
Sbjct: 51  PGASAKTVEDSVSQILEQQIKGIDGLLYFSSSSSSAGQARISLSFNQKTNPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  + ++  +  T  +  S+++     +     +++ S  ++    D +   
Sbjct: 111 AVNQALSRLPQEVQQQGITVTKSQGDSLLVFALYDESNTRTSVDISDYMVSTLQDPLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L       + +       N        G    RD  
Sbjct: 171 DGVGEITVFGAQ-YAMRIWLDPHKLNSYGLMPSDVRTAIEAQNAQITAGELGALPTRDGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     +                ++    I   +             + +     
Sbjct: 230 ALNATVTALSRL-------------QTVNQFENIILRTQTNGAVVLLKDVARVERGAENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +       +  +   T E        L               +      
Sbjct: 277 QTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTGSMPSGLKVAYPRDSTPFVEA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV+IV+F+ +   +  L+   ++ + ++ T  +LS+LG ++   ++
Sbjct: 337 SVKGVIKTLAEAIVLVVIVMFLFLQSWRATLIPAIAVPVVLLGTFGVLSILGYSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + ++     +  +        +    +      + 
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMHEQHIDARQATLISMKEISGALVGIAMVLAAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  ++++S   A+++  A+   +++    K       + F  
Sbjct: 457 MAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLLKPANEKQKQRKFFTWFNR 516

Query: 534 IPDCIAIQFMRA------RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
             +     +         +     I  L     +   +T      +  +    + V  + 
Sbjct: 517 KVEQGQSSYRIKLLAVLGKPKIFMIIFLGITALLGWQYTRMNTGFLPQEDQGSVMVQFST 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           PV  ++  +      I D          N +  +  +      Q 
Sbjct: 577 PVGTTLAETERVGNLIADYFLTKEKDNLNVIFMVMGRNNAGSGQN 621



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    S +      + +        +++     ++    ++T  +P 
Sbjct: 261 VLLKDVARVERGAENYQTSTRLNGKPASGMSIQLASGANALETAERVKAEVTRLTGSMPS 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                            ++  I  +  + + ++I +++    W   L     + + +  T
Sbjct: 321 GLKVAYPRDSTPFVEASVKGVIKTLAEAIVLVVIVMFLFLQSWRATLIPAIAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ++ G   N   + A++  IG  V+D +VV + +     ++   I  R     S+ E
Sbjct: 381 FGVLSILGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERVMHEQHIDARQATLISMKE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      LPMA +GGSV      F++ +   +V++A  ++ ++  +   + 
Sbjct: 439 ISGALVGIAMVLAAVFLPMAFFGGSVGIIYRQFSVTLVSAMVLSAIVALTLSPALCATLL 498

Query: 825 DWRAKNAR 832
               +  +
Sbjct: 499 KPANEKQK 506



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 76/212 (35%), Gaps = 8/212 (3%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIISAIAML 681
             Q   S A          K+ E+V      N +  G     +L   + I   + S I + 
Sbjct: 822  IQIQGSAATGESSGGAMDKMQELVDQQQGFNLQWSGLSYQEKLAGGQTIWLYLASIIFIF 881

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +   ++ W   +  +  + L +   +   +L G   ++    A+LT IG S  + +++
Sbjct: 882  LCLAALYESWSIPVSVMLVIPLGLIGAVMAASLAGFVNDIYFQVAMLTTIGLSAKNAILI 941

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
             +             +  + I +   + L   + TS+A    VLP+AV    G       
Sbjct: 942  VEFA---AAKLEAGQALMEAIIEGAGQRLRPIIMTSLAFVAGVLPLAVSTGAGAVSRKEI 998

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             I +  G++     SIF      L +     K
Sbjct: 999  GIAVTGGMISGTLLSIFFVPLFFLLVRRLTNK 1030


>gi|313891645|ref|ZP_07825252.1| export membrane protein SecF [Dialister microaerophilus UPII 345-E]
 gi|313119923|gb|EFR43108.1| export membrane protein SecF [Dialister microaerophilus UPII 345-E]
          Length = 293

 Score =  198 bits (502), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 143/290 (49%), Gaps = 1/290 (0%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                 ++       IS +  I S   +F    N+GIDF GG  L +   + V +  VR 
Sbjct: 1   MSNFNVIKHSKIWFTISGILVILSFIAIFMFKFNFGIDFTGGTILDLEFKQNVTVQQVRE 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +  +   + Q   G+ +               +   + V + I + +    ++  E 
Sbjct: 61  ELRNNDLETSTIQLL-GDGHEDSGKNVMIRTKNLSSEESQKVIENIKKGIGDVDVKRMET 119

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  I  E+    ++ V  S +AM+IY+ +RF+   A+ +I  +  DI   LG FA+F +
Sbjct: 120 VGAVIGSEVTENTLLNVGFSFLAMIIYMTVRFEHKIAISSIIAICHDILMVLGAFAIFHL 179

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           E + + +AAVLT++GYS+N+ VV++DR+R+N+  +  + SF  L + SI++T+ RS+YT 
Sbjct: 180 EVDASFLAAVLTVLGYSMNESVVIFDRIRENIHTHKRTDSFEKLANDSIHQTIHRSMYTL 239

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                +   +  +GG    +FA+ M  G +  A SS+ IA  + +  ++ 
Sbjct: 240 STVLFATGALYFFGGDTTKNFALVMLIGFISGAYSSVCIATSLWVKWHER 289


>gi|323527226|ref|YP_004229379.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Burkholderia sp. CCGE1001]
 gi|323384228|gb|ADX56319.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1001]
          Length = 1064

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 66/571 (11%), Positives = 152/571 (26%), Gaps = 38/571 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P                      
Sbjct: 8   RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPAVQ---------ISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  S L        +        ITL+FA     +    +V   LQ 
Sbjct: 54  AKTVENTVTQVIEQSMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++     T      +++     +    +  + +  +     D +   +   
Sbjct: 114 ATPLLPQAVQQLGTKVTKSSSSFLMVMAFVSEDGSMNKYDLANYVASNVQDPVSRIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D ++L     T   +       N    G   G          Q 
Sbjct: 174 TVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVQSALQAQNVQVAGGSLGGTPSVPGQVLQA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +   +                 +    +        +        +           
Sbjct: 233 TITEATLL-------------NTPEQFGNVLLKVNPDGSQVRIKDVARVELGGENYNFDT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +        L        +             S   
Sbjct: 280 KYNGQPTAGFGIQLATGANALATAKAVRAKIDELSKYFPHGLVVKYPYDTTPFVRLSIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A++S++G ++   S+ G+V
Sbjct: 340 VVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVMSVVGFSINTLSMFGLV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPREATRKAMDQITGALVGVALVLSAVFVPVAFS 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F++T+  ++++S+  A+ +  A+   I     +K I              
Sbjct: 460 GGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHG 568
               F ++R             S   L  + 
Sbjct: 515 FNRTFNKSRDRYHSGVHHVIKRSGRWLIIYM 545



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +  +   +                 +++A  + +     ++++  
Sbjct: 258 SQVRIKDVARVELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRAKIDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     L     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S R+   K++
Sbjct: 378 GTFAVMSVVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 79/247 (31%), Gaps = 8/247 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V       +            G    + ++G     ++    PG S  Q           
Sbjct: 790  VRNTGGSMVPFSSFASGEWAYGSPKLERYNGISAVEIQGAAAPGKSTGQAMSAMEALVAK 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +   +   +      + +++  + +     +   W      I  + L
Sbjct: 850  LPAGIGYEWTGLSLQERQSGSQAPILYGISILVVFLCLA---ALYESWSIPFSVIMVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    L G+E ++     +LT +G S  + +++ +  R+        +   +   
Sbjct: 907  GVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARE--LQQGEGMGPIEAAL 964

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + V+P+A+    G +   +    +  G++ A   +IF+    
Sbjct: 965  EAARLRLRPILMTSLAFILGVMPLAISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMF 1024

Query: 820  LLFIYDW 826
             + I   
Sbjct: 1025 FVVIRAK 1031



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 136/520 (26%), Gaps = 28/520 (5%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         L     G +       
Sbjct: 536  RSGRWLIIYMVVIVAVGLLFV------RLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              D  +  L      + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LKDVSDYLLNSEKAIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHGDQKVQALVGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +           L+       I  + +    D  +          + +  + +    +  
Sbjct: 650  LFMHFGSYKNA-LVYPVNPPSIPELGTAAGFDFELQDRAGVGHAKLMEARNMLLGMAAKD 708

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
              L   R        Q    +         +S   +    S       V    D+DG   
Sbjct: 709  PTLAQVRPNGLNDTPQFKVNIDHEKAAALGVSLSAIDQTFSIAWASQYVNNFLDTDGRI- 767

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                KV + G              +           G       +  +           R
Sbjct: 768  ---KKVYMQGDAPFRMKPEDLSAWY-------VRNTGGSMVPFSSFASGEWAYGSPKLER 817

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +     +   + +G        ++A +            ++ER  G      S 
Sbjct: 818  YNGISAVEIQGAAAPGKSTGQAMSAMEALVAKLPAGIGYEWTGLSLQERQSG------SQ 871

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  I   +V + L  +             + L VI  L   +L G    +    G++
Sbjct: 872  APILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931

Query: 422  LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +GL+  + IL+ E  RE +  +      +           I  +++  ++  + L   
Sbjct: 932  TTVGLSAKNAILIVEFARELQQGEGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAIS 991

Query: 481  ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
               G  +       +   +L + F AI ++    + I   
Sbjct: 992  NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031


>gi|308049012|ref|YP_003912578.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
 gi|307631202|gb|ADN75504.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
          Length = 1047

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 72/637 (11%), Positives = 176/637 (27%), Gaps = 43/637 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVLASVISLLLIAFGLVA-----FDKLPLREYPNIDPPVV---------DISTSYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + ++       + R  ++ +TL F   R  +  A+ V   +  
Sbjct: 55  SAAVVETKITRVIEDRVAGVEGIRNISSTSRDGRSSVTLEFNVGRDIDAAANDVRDRISR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +     +   +     I+      D      ++ +    R  +D+  + +   
Sbjct: 115 VLDNLPEEADPPEVQKASGSSEVIMWLNLVSD--RMDTLQLTDYARRYLVDRFSVIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D  +L     T   +       N          +    S   Q 
Sbjct: 173 NVRVGGGKVYAVRVWVDRQKLASRGLTVTDIEDALRADNVELPAGSIESQSRLFSVRVQ- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RSFIHPDDFAKLVIGSGPDGYLIRLADVAQVELDTEEERIAF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     + ++  +     E    L   L               +      S   
Sbjct: 274 RGNLQDMIGLGVTRQSTANTLEVAEQVHQLVDELNKSLPAGMEIKRSYDSSVFIQASIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +   +  L+   ++ +++I T  +L  LG ++ L ++  ++
Sbjct: 334 VYRTLFIAMALVVVVIYLFLGSVRAMLIPAVTVPVSLIGTFIVLYALGFSINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     + +    +  +G  +    I  +    +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHSRIEQGEPPLKAAFLGARQVGFAIVATTAVLVAVFLPIGFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      R F+I M  ++++S   A+S+   M   +          ++ ID        +
Sbjct: 454 GDLGKLFREFSIAMSAAVILSSVVALSLSPMMGSKLLKPVENEPWLVRKIDAGVEWLKGI 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     R     V +                     + +G + L V   +      
Sbjct: 514 YRRALEAWIQRPVLVVVILIGALGGSGWLFSKLPSEFAPKEDRGSMFLIVNGPQGATYEF 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           ++  ++ ++   +        K  L+R     G +  
Sbjct: 574 MKPYMDEIEHRLMPLVEAGEIKRLLIRAPRGFGRTED 610



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 75/214 (35%), Gaps = 9/214 (4%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           + Q+  G              +    ++++ + K +   + +    ++ +       E+ 
Sbjct: 276 NLQDMIGLGVTRQSTANTLEVAEQVHQLVDELNKSLPAGMEIKRSYDSSVFIQASIDEVY 335

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           R   + +  + + ++IY+         L    T+ + +  T       G   NL  + A+
Sbjct: 336 RTLFIAM--ALVVVVIYL-FLGSVRAMLIPAVTVPVSLIGTFIVLYALGFSINLLTLLAM 392

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  IG  V+D +V+ + +                      +     V T+       LP+
Sbjct: 393 ILAIGMVVDDAIVMLENIH---SRIEQGEPPLKAAFLGARQVGFAIVATTAVLVAVFLPI 449

Query: 787 AVWGGS---VIGSFAIPMAFGIVVAASSSIFIAA 817
               G    +   F+I M+  +++++  ++ ++ 
Sbjct: 450 GFLEGDLGKLFREFSIAMSAAVILSSVVALSLSP 483



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  + T+ L     L          N+ +   ++ LIG +  + +++ +      +L  
Sbjct: 880  PLVIMLTVPLATFGALLGLYFTDQSLNIYSQIGIIMLIGLAAKNGILIVEFAN---QLRD 936

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              + F   I  +    L   + T +      +P+ +    G        + +  GI++A 
Sbjct: 937  RGVPFEQAIIDAAAARLRPILMTGITTAAGAVPLVLASGAGAETRFVIGVVVLSGILLAT 996

Query: 810  SSSIFIAAPILLFIYD 825
              ++ +   +   +  
Sbjct: 997  FFTLLVIPVVYGLLAR 1012


>gi|282899827|ref|ZP_06307789.1| protein-export membrane protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195309|gb|EFA70244.1| protein-export membrane protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 318

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 159/311 (51%), Gaps = 16/311 (5%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV------ 583
               +     I ++ +    +   I   I          L  G+DF GG +L +      
Sbjct: 1   MRLHVNKWRNIWWVFSSVIIISGIISMVISWQIPTIKAPLRPGLDFIGGTRLQLVRDCKQ 60

Query: 584 --LANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKK 640
               N+P+D++VVR   +   +G+ S Q          + ++ +  D+  + ++   + +
Sbjct: 61  PGNCNQPIDINVVREVAKEQGLGESSIQLISDNGEQNGITIRTKNLDTDQRVKLQSALSQ 120

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K+    P       + VGP + REL R GI+ +I+S I + IY+ +RF+W +A+ AI  L
Sbjct: 121 KVGVFDP--QKNQIDDVGPTLGRELFRSGIIALIVSFIGITIYLAVRFQWDYAVFAIIAL 178

Query: 701 ILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + DI  T+G F++FG    IE +   + A+LT+ G+SVND VV+YDR+R+N+K     I 
Sbjct: 179 LHDILITVGIFSIFGLVFGIEVDSLFIVALLTITGFSVNDTVVIYDRIRENIKTSPH-IP 237

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++D ++++TL RS+ T++   +S++ + ++GG  +  F++ +  G      SSIFIA
Sbjct: 238 IDRIVDDAVDQTLSRSINTTLTTMLSLVAIFIFGGETLKYFSLALIIGFGAGVYSSIFIA 297

Query: 817 APILLFIYDWR 827
           + +L    +  
Sbjct: 298 STLLTLWRERS 308


>gi|283851335|ref|ZP_06368617.1| protein-export membrane protein SecF [Desulfovibrio sp. FW1012B]
 gi|283573285|gb|EFC21263.1| protein-export membrane protein SecF [Desulfovibrio sp. FW1012B]
          Length = 363

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 90/340 (26%), Positives = 153/340 (45%), Gaps = 48/340 (14%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVDL 591
           LI     I F++ R     IS    +     L   G   +G+DF GG+ + V   + +D+
Sbjct: 5   LIKPGTNINFLKYRKLAYLISAAIIVAGFVSLAVKGGPRFGVDFAGGLSIQVRFAKALDV 64

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVPLST 650
             +   ++ + + ++  Q F  ++     ++        +T R                 
Sbjct: 65  ETITKAVDQVGLDNVVVQRFGQDEANEFLIRASDNGVNQETVRASVEAALAKNLPDSGYA 124

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF---------------------- 688
           +Q  E+VGPK+  +L  K +  +  S + + IYI  RF                      
Sbjct: 125 VQRLEMVGPKVGADLRGKALEAIFYSVLLIAIYISGRFEQRWMAAGMMAAGLAGGIYLLK 184

Query: 689 ------------------------KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                                   +  +ALGA+   + DI  T+  F+L   EF+LT VA
Sbjct: 185 LAGASTVWLIAAAMCITLALCFVMRLKYALGAVVADLHDILVTVSIFSLLDKEFDLTIVA 244

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND ++VYDR+R+  +    ++ F  +I+ S+NETL R++ T+    ++V 
Sbjct: 245 ALLTILGYSLNDTIIVYDRIREKNRAVGKALPFEQVINASVNETLSRTILTAGTTLLTVA 304

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +   GG+VI  FA+ M  GI+    SSIF+A+PILL + 
Sbjct: 305 CLYFLGGAVIHDFALAMLIGILAGTYSSIFVASPILLDLG 344


>gi|237730445|ref|ZP_04560926.1| AcrB protein [Citrobacter sp. 30_2]
 gi|226905984|gb|EEH91902.1| AcrB protein [Citrobacter sp. 30_2]
          Length = 1049

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 67/686 (9%), Positives = 175/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFQSGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +          +           S   
Sbjct: 280 KFNGKPASGLGIKLATGANALDTANAIRDELKKMEPFFPSGLKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+++ +   +  L+   ++ + ++ T A+L++ G ++   ++ G+V
Sbjct: 340 VVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAIFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +       +  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWFNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         +     I+    +   +         + +G         
Sbjct: 520 FDKSTHHYTDSVGGILRSTGRYLALYLIIVVGMAYLFVRLPSSFLPDEDQGVFLSMAQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLDEMTDYYLTKEKANVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++           ++    +  
Sbjct: 640 KENKVEAITQRAMGAFSQIKDAMVFA 665



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGKPASGLGIKLATGANALDTANAIRDELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLAEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A+FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAIFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 63/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 839  EAMAMMEQLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 899  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 959  G--LIEATLDAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1016

Query: 811  SSI 813
             +I
Sbjct: 1017 LAI 1019


>gi|119713614|gb|ABL97665.1| protein-export membrane protein SecF [uncultured marine bacterium
           EB0_39H12]
          Length = 305

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 95/289 (32%), Positives = 153/289 (52%), Gaps = 4/289 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I F+  R   +  S +F I SI       LNYG+DF GG  + +      ++S +R
Sbjct: 1   MTFNIDFLAWRRIALIFSSVFLILSIGSWLFKDLNYGLDFTGGTLVELSYPDSANISEIR 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L           NF   K  L++L     DS+    V  +    +        ++  E
Sbjct: 61  QTLVLGGFEGAQVANFGSSKEVLIKLPGTVSDSLGSEIVSLLSSSSL---DQEIDLRRIE 117

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP+I  EL   G   ++I+   M++YI  RF+  FA  A+  LI D+   +G F+L  
Sbjct: 118 YVGPQIGSELRDDGGTAMLIALAFMMLYIAFRFQSMFAGAAVIALIHDVIVVIGIFSLIQ 177

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IEF+LT +AA+L +IGYS+ND +VV DR+R+N++   +  S  ++I+ S+N+TLGR++ T
Sbjct: 178 IEFDLTVLAALLAVIGYSLNDTIVVSDRIRENLRSMES-DSTHEIINTSLNQTLGRTLIT 236

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           S+   + +  +   GG +I +FA+ + FG++V   SSI+IAA  L+ + 
Sbjct: 237 SLTTLLVLFSLYFLGGELIKNFALALIFGVIVGTYSSIYIAANALIMMG 285


>gi|304413738|ref|ZP_07395182.1| preprotein translocase subunit SecF [Candidatus Regiella
           insecticola LSR1]
 gi|304283829|gb|EFL92223.1| preprotein translocase subunit SecF [Candidatus Regiella
           insecticola LSR1]
          Length = 336

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 92/313 (29%), Positives = 167/313 (53%), Gaps = 12/313 (3%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +   L        FMR      G+S+L  + +I ++ T G N+G+DF GG  + V   
Sbjct: 6   NYTVEQLNYGRKVYDFMRWDSIAFGVSLLLLVAAILVMSTRGFNWGLDFTGGTVIEVNLE 65

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-----------QYQPGDSVAQTRVL 635
            P +L  +R +++         QNF   ++ ++RL              P     Q    
Sbjct: 66  HPANLDKMRDSIQQAGFSTPVIQNFGSTRDVMIRLAPTLPAATAISTTMPTSGANQEIGN 125

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           +++      I   +T++  E VGP +  EL + G + ++I+ +++LIY+  RF+W  ALG
Sbjct: 126 KIITIINESIDKNATVKRIEFVGPSVGSELAQAGAMALLIALLSILIYVGFRFEWRLALG 185

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A+  L  D+  TLG  +L  IE +LT VA+++++IGYS+ND +VV DR+R+N +  +   
Sbjct: 186 AVIALGHDVAITLGILSLCDIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKISRGT 245

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           S+ ++I+ S+ +TL R++ TS    + VL + ++GG+++  F++ M  G+ +   SSI++
Sbjct: 246 SY-EIINISLTQTLSRTIMTSATTLVVVLMLYIFGGTMLQGFSLTMLIGVSIGTVSSIYV 304

Query: 816 AAPILLFIYDWRA 828
           A+ + L +   R 
Sbjct: 305 ASALALRLGVKRE 317


>gi|293610932|ref|ZP_06693231.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826584|gb|EFF84950.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1058

 Score =  197 bits (501), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 66/554 (11%), Positives = 154/554 (27%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGIDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNSLSDSDIKDYVNSSIKEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N+       G        
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T E      + LR        + +          
Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPTGLADKLAYDTTPFIRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + ++     +      +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATSRSMQQISGALIGITSVLTAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A++   A+   I++         N +   F 
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKAPSNNIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                    M   +
Sbjct: 516 RGFNNGFDRMSHSY 529



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +        L        +++     +E    ++ +  P 
Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPT 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I   +  +I + + + I +++  + W   +     + + +  T
Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N   + A++  IG  V+D +VV + +     +            +S+ +
Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATSRSMQQ 437

Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G  +  TS+      +PMA +GG   VI   F+I +   +V++   ++     +   I
Sbjct: 438 ISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATI 496

Query: 824 YDWRAKNA 831
                 N 
Sbjct: 497 LKQHDPNK 504



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 75/232 (32%), Gaps = 17/232 (7%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-- 672
                             +       ++I   +P   +Q  +     +S E    G     
Sbjct: 821  NGVSSVNIQGTPAPGVSSGDSMKAMEEIIAKLPSMGLQGFDYEWTGLSLEERESGAQAPF 880

Query: 673  -VIISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALF-----GIEFNLTAV 723
               +S + + + +   ++     F++  +  L +     L +  +       +  N+   
Sbjct: 881  LYALSLLIVFLCLAALYESWSIPFSVLLVVPLGIIGAIVLTYLGMIIKGDPNLSNNIYFQ 940

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             A++ +IG S  + +++ +  ++   L        +    +    L   + T++A    V
Sbjct: 941  VAMIAVIGLSAKNAILIVEFAKE---LQEKGEDLIEATLHAAKMRLRPIIMTTLAFGFGV 997

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            LP+A+    G     S    +  G++ A    IF      ++I        +
Sbjct: 998  LPLALSTGAGAGSQHSVGYGVLGGVLSATFLGIFFIPVFYVWIRSIFKYKPK 1049


>gi|307730862|ref|YP_003908086.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1003]
 gi|307585397|gb|ADN58795.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1003]
          Length = 1064

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 65/575 (11%), Positives = 154/575 (26%), Gaps = 46/575 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPA-------------VQISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   +     +   S     +    ITL+FA     +    +V  
Sbjct: 50  PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++     T      +++     +    +  + +  +     D +   
Sbjct: 110 KLQLATPLLPQAVQQLGTKVTKSSSSFLLVMAFVSEDGSMNKYDLANYVASNVQDPVSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    D ++L     T   +       N    G   G        
Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVETALQAQNVQVAGGSLGGTPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        I       
Sbjct: 229 VLQATITEATLL-------------NTPEQFGNVLLKVNQDGSQVRIKDVARIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATAKAVRAKIDELSKYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++S++G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMSVVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPREATRKAMDQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                   F ++R             S   L  + 
Sbjct: 511 FFGWFNRTFNKSRDKYHSGVHHVIKRSGRWLIIYM 545



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +  +   +                 +++A  + +     ++++  
Sbjct: 258 SQVRIKDVARIELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRAKIDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     L     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S R+   K++
Sbjct: 378 GTFAIMSVVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 77/233 (33%), Gaps = 8/233 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
                   G    + ++G     ++    PG S  Q                        +
Sbjct: 804  ASGEWTYGSPKLERYNGISAVEIQGAAAPGKSTGQAMSAMEALVAKLPAGIGYEWTGLSL 863

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               +   +      + +++  + +     +   W      I  + L +   L    L G+
Sbjct: 864  QERQSGSQAPILYGISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGL 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            E ++     +LT +G S  + +++ +  R+        +   +   ++    L   + TS
Sbjct: 921  ENDVFFQVGLLTTVGLSAKNAILIVEFARE--LQQGEGMGPIEAALEAARLRLRPILMTS 978

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +A  + V+P+A+    G +   +    +  G++ A   +IF+     + I   
Sbjct: 979  LAFILGVMPLAISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 138/520 (26%), Gaps = 28/520 (5%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         L     G +       
Sbjct: 536  RSGRWLIIYMVVIVAVGLLFV------RLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              D  +  L      + S     G       Q    + +   D   +++  +KV   +  
Sbjct: 590  LKDVSDYLLNSEKAIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHADEKVQALVGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +           L+       I  + +    D  +        E + +  + +    +  
Sbjct: 650  LFMHFGSYKGA-LVYPVNPPSIPELGTAAGFDFELQDRAGVGHEKLMEARNMLLGMAAKD 708

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
              L   R        Q    +     +   +S   +    S       V    D+DG   
Sbjct: 709  PTLAQVRPNGLNDTPQFKINIDHEKASALGVSLSAIDQTFSIAWASQYVNNFLDTDGRI- 767

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                KV + G              +                   +  +           R
Sbjct: 768  ---KKVYLQGDAPFRMKPEDLSAWY-------VRNTAGGMVPFTSFASGEWTYGSPKLER 817

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +     +   + +G        ++A +            ++ER  G      S 
Sbjct: 818  YNGISAVEIQGAAAPGKSTGQAMSAMEALVAKLPAGIGYEWTGLSLQERQSG------SQ 871

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  I   +V + L  +             + L VI  L   +L G    +    G++
Sbjct: 872  APILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931

Query: 422  LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +GL+  + IL+ E  RE +  +      +           I  +++  ++  + L   
Sbjct: 932  TTVGLSAKNAILIVEFARELQQGEGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAIS 991

Query: 481  ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
               G  +       +   +L + F AI ++    + I   
Sbjct: 992  NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031


>gi|149194834|ref|ZP_01871928.1| protein export protein SecD [Caminibacter mediatlanticus TB-2]
 gi|149134993|gb|EDM23475.1| protein export protein SecD [Caminibacter mediatlanticus TB-2]
          Length = 518

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 160/538 (29%), Positives = 293/538 (54%), Gaps = 30/538 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   + ++++ +    G+   +P+FL ++            +++LGLDL+GG +LVL V
Sbjct: 1   MKKLNYRLVIFILATLFGIAFTIPSFLGKNP-----------KVNLGLDLQGGMYLVLGV 49

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            ++D +   ++  +  ++   +K+ + + +++   NKI     D+  ++ +  ++     
Sbjct: 50  KQEDAIKNKIKTIASTIKYISEKKELFIDNLKVKNNKIEFELIDNGDEKAMDKELATI-- 107

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                         +      E  + L    I++    AI+ +++ IR R+D  G++E +
Sbjct: 108 -------KGINIKKIPKNGSIEYIVSLKPEEIEKTKEDAIKLAVQTIRSRLDAYGLAEPS 160

Query: 181 IQRLGSHRILIQLPGEQDPSR---LRQLLGTTAKMSFHKVLPNNSKKGFMFGVR------ 231
           + R G  +I+++LPG +       +++L+ + A +  + V             +      
Sbjct: 161 VTRQGKDKIVVELPGIKTQKEKESIKKLISSAAHLELYLVDDERKITSPKEAAKYGDILL 220

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +++    +L++    + G  +  AT  F  KT++P +  + +  GA+ F +VT  N+G
Sbjct: 221 PDKNNPNKMWLLKTPPVLDGSMITNATVGFTQKTNQPAIFFTLNSQGAKIFGDVTGKNVG 280

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K LA+V+D +V +APVI + I  G  QI+   + E A ILA  LR+GSLP  + ++E+R+
Sbjct: 281 KRLAIVVDNKVYSAPVIQERIGGGSGQIT-VGSPEEAHILAIALRSGSLPAPVVLLEQRS 339

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VGA LG+DSI     A+++G V++VLFM   Y   G++AD ++  N+ L +++++L GAT
Sbjct: 340 VGASLGADSIRNSMIALISGFVIVVLFMAWYYRLAGIIADIALITNLFLIISIMALFGAT 399

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP +AGIVL +G+AVD+N+++NERIRE  R+   +  +++ G+  A S I D+NIT L
Sbjct: 400 LTLPGMAGIVLTVGMAVDANVIINERIRELIREGVPIRKAIEGGYKNAMSAILDANITTL 459

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           IA + LF +G G ++GFAITM + IL SM TAI     +  F++   K  +     + 
Sbjct: 460 IAAIALFAYGTGTIKGFAITMAIGILASMLTAILGTHGIWQFLLDMGKKITPKDFGMK 517



 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 36/176 (20%), Positives = 81/176 (46%), Gaps = 4/176 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VG  +  + IR  ++ +I   + +++++   ++    + A   LI ++   +   AL
Sbjct: 337 QRSVGASLGADSIRNSMIALISGFVIVVLFMAWYYRL-AGIIADIALITNLFLIISIMAL 395

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     +  R  I+      +   +
Sbjct: 396 FGATLTLPGMAGIVLTVGMAVDANVIINERIRELIRE---GVPIRKAIEGGYKNAMSAIL 452

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             ++   I+ + +  +G   I  FAI MA GI+ +  ++I     I  F+ D   K
Sbjct: 453 DANITTLIAAIALFAYGTGTIKGFAITMAIGILASMLTAILGTHGIWQFLLDMGKK 508


>gi|146387261|pdb|2HQC|A Chain A, Conformation Of The Acrb Multidrug Efflux Pump In Mutants
           Of The Putative Proton Relay Pathway
          Length = 1053

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 70/690 (10%), Positives = 177/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL V   I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVADAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 + ++   +   +   ++    +  
Sbjct: 636 DRPGEENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 81/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVADAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSIPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|217076328|ref|YP_002334044.1| protein-export membrane protein SecF [Thermosipho africanus TCF52B]
 gi|217036181|gb|ACJ74703.1| protein-export membrane protein SecF [Thermosipho africanus TCF52B]
          Length = 302

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 84/302 (27%), Positives = 155/302 (51%), Gaps = 16/302 (5%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I F+  R   + IS++  + S+  +FT G NYG++F GG ++ +  N  V  S VR  ++
Sbjct: 2   IDFVGKRKIFIVISLILVVASLISIFTKGFNYGVEFLGGSEIILKVNAEVSESDVRQLIK 61

Query: 600 SLQIGDISFQNFDGEKNFL---------------VRLQYQPGDSVAQTRVLEMVKKKITE 644
            L     + +    +                      + +      ++ + + + +    
Sbjct: 62  DLAPEFENARITKIKSVDDPKGISKFSIVVSPKDENGELKVYTGEEKSVLSQKIVEAFKN 121

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
               + +          ++E+       ++ + +A+LIYI +RF++ F +GA+  LI D+
Sbjct: 122 NNYTAEVIGFNETSGYAAQEIKNLTWKAIVFTLLALLIYITLRFQFVFGVGAVVALIHDV 181

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             TLGF++ F  E N+ AVAA+LTLIGYS+ND +VVYDR+R+N++  +   +   L++ S
Sbjct: 182 VITLGFYSFFNYELNVAAVAAILTLIGYSLNDTIVVYDRIRENLRR-SRGSTIETLVNNS 240

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           IN+ + R++ TS+  FI +  + ++ G+ I  FA  M  G +V   SS++IA+PI++   
Sbjct: 241 INQVIKRTINTSLTTFIVIFILLLFSGNSIKPFAFGMTIGTIVGTYSSLYIASPIVIRWI 300

Query: 825 DW 826
             
Sbjct: 301 KK 302


>gi|261341072|ref|ZP_05968930.1| acriflavine resistance protein B [Enterobacter cancerogenus ATCC
           35316]
 gi|288316938|gb|EFC55876.1| acriflavine resistance protein B [Enterobacter cancerogenus ATCC
           35316]
          Length = 1048

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/685 (9%), Positives = 174/685 (25%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDVISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 SIIAQTRLTSAD-------------EFGKILLKVNPDGSQVRLRDVAKVELGGENYDVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +          +           S   
Sbjct: 280 KFNGKPASGLGIKLATGANALDTAAAIRAELKKMEPFFPSGLKIVYPYDTTPFVQISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L++ G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAIFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++ +S+  A+ +  A+   +                   +   
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVQKGGHGEHKGFFGWFNRMF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + +   I+    +   +         + +G          
Sbjct: 520 DKSTNHYTDSVGSILRSTGRYLLLYIIIVVGMAFLFVRLPSSFLPDEDQGVFLSMAQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +    ++ +  + E  F V      G           +K        
Sbjct: 580 GASQERTQKVLDEMTDYFLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGK 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            + ++           ++    +  
Sbjct: 640 ENKVEAITGRAMGTFSQIKDAMVFA 664



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKVELGGENYDVIAKFNGKPASGLGIKLATGANALDTAAAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVQISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A+FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAIFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 65/193 (33%), Gaps = 7/193 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G +       E +         L      +  G      L       +  IS I + + +
Sbjct: 828  GQAAEGKSTGEAMAMMEQLASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L      G+  ++     +LT IG S  + +++ + 
Sbjct: 888  AALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEF 947

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  M+         +    ++   L   + TS+A  + VLP+ +    G     +    
Sbjct: 948  AKDLMEKEGKG--LIEATLDAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTG 1005

Query: 801  MAFGIVVAASSSI 813
            +  G+V A   +I
Sbjct: 1006 VMGGMVTATVLAI 1018


>gi|54302553|ref|YP_132546.1| putative acriflavin resistence protein [Photobacterium profundum
           SS9]
 gi|46915975|emb|CAG22746.1| putative acriflavin resistence protein [Photobacterium profundum
           SS9]
          Length = 1051

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 77/690 (11%), Positives = 197/690 (28%), Gaps = 40/690 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G + AL        +  +P   P +          G        
Sbjct: 8   QRPKFALVISIILTLAGAIAAL-----NLPVAEYPKISPPSV---------GVTAYYSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++             +  + ++F      +     V   + 
Sbjct: 54  SAEVVEEAIADPIEASVNGVENMIYMSSKSANDGSYSLNVTFDIGTDPDMAQVNVQNRIS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + SKL  + +   +         +++               +  I     DQ+   +  
Sbjct: 114 QIESKLPAEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDKFLNNYINLNVKDQLARVKGI 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    +P ++  L  TTA ++      N        G     ++   Q
Sbjct: 174 SEVNVLGGGEYAMRVWLNPEKMANLGLTTADVNAALTEQNVQVAAGQVGAPPYNNAQEVQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           + +  K  +                 +    +          F      +          
Sbjct: 234 FNLVTKGRL-------------ETVEEFEDVVLRANNDGSIVFLKDVARVELGKKFYTVN 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +           + ++  +   + +    L   +                      S  
Sbjct: 281 GMFRDQPAAIVTLNLQSDANALESGDAVMSLLDGMNKNFPEGMAYETSYDTTLFVAESIK 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V +M +   +  L+   +I +++I T A++   G T+   ++ G+
Sbjct: 341 GVVVTLIQAIILVIAVTYMFLGSMRSTLIPVVAIPVSLIGTFAIMLAAGFTINTVTLFGL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---ALIATV 475
           +L IG+ VD  ILV E +     ++   S   +  +        I  S +      I   
Sbjct: 401 ILAIGIVVDDAILVIENVDTNMARDPSLSPRQATLIAMKEVTGPIITSTMVLLAVFIPVA 460

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLS 529
           +L    G   R FA+T+ +S++IS   A+++  A+   +       + +  ++ +     
Sbjct: 461 MLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGDGNKSRWFQTFNKGLDK 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                         ++        +     +     T       + KG + + V      
Sbjct: 521 VTLKYGSIAGYLVRKSVLLVTFFILAVGAVTYLSKTTSTAFVPTEDKGILLVNVQLPDSA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            LS        LQ   ++ +             +  G + +    L +  K+      + 
Sbjct: 581 SLSRTEEATIKLQDI-LAEEPGIEGITVANGYAFLTGAAASNGASLFIKLKEWGVRNEME 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIA 679
              ++  +  +I+     +    ++ +  A
Sbjct: 640 GEHSSFAISNRINARSATELPEAIVFAMGA 669



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 85/247 (34%), Gaps = 10/247 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + + AN    +  ++              N          +              + V  
Sbjct: 251 VVLRANNDGSIVFLKDVARVELGKKFYTVNGMFRDQPAAIVTLNLQSDANALESGDAVMS 310

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRF----KWYFALG 695
            +  +                +  +    I GV+++ I A+++ I + +         L 
Sbjct: 311 LLDGMNKNFPEGMAYETSYDTTLFVAES-IKGVVVTLIQAIILVIAVTYMFLGSMRSTLI 369

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + +  T       G   N   +  ++  IG  V+D ++V + +  NM    + +
Sbjct: 370 PVVAIPVSLIGTFAIMLAAGFTINTVTLFGLILAIGIVVDDAILVIENVDTNMARDPS-L 428

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
           S R     ++ E  G  + ++M      +P+A+  G        FA+ +   +V+++ ++
Sbjct: 429 SPRQATLIAMKEVTGPIITSTMVLLAVFIPVAMLPGITGIMYRQFALTICISVVISSINA 488

Query: 813 IFIAAPI 819
           + ++  +
Sbjct: 489 LTLSPAL 495



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/393 (11%), Positives = 109/393 (27%), Gaps = 24/393 (6%)

Query: 459  AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFII 515
            A S   ++     +   ++F  G  AV G     G   ++      S   +   M   I 
Sbjct: 646  AISNRINARSATELPEAIVFAMGAPAVPGMGAASGFEFVLEDTLGRSRTDLANVMGEMIQ 705

Query: 516  RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
            +  +   I     +    +P                            L +  +N    +
Sbjct: 706  KANQQPEIQFTFSTFRANVPHFYVDIDRVKAKQLGIPLTDIFQTLQGNLGSMYVNDFTLY 765

Query: 576  KGGIQLGVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                ++ V A+              V  +       S           D    + +    
Sbjct: 766  GKNFRVTVQADSEYRDNLDTLERFHVRSASGDMIPLSTLTSIEQVFEPDVAWRYNMYRSA 825

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLI 682
                S A           +  +      Q  +     ++ + ++ G   +   +   + I
Sbjct: 826  VIQGSPAPGYSSGDAIAAMERVAADVLPQGYQYEWTGMAYQEVKAGNQAIYAFALALIFI 885

Query: 683  YIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            Y+++      W   L  I  + +    +    A+ G   NL A   ++ LI  +  + ++
Sbjct: 886  YLFLVAQYESWSIPLAIILVVPVATLGSFLALAMTGTPLNLYAQIGLVLLIALAAKNAIL 945

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--S 796
            + +  +  ++     +       +           TS +  + +LP+    G   I   S
Sbjct: 946  IVEFAK--IEREENELDIEKAAVRGGKLRFRAVNMTSWSFILGILPLIFASGAGHISQNS 1003

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              I +  G++    +   +       +   R K
Sbjct: 1004 LGISLTGGLLCVLLAGTILIPGFFSLVQKRREK 1036


>gi|332978406|gb|EGK15123.1| protein-export membrane protein SecD [Psychrobacter sp. 1501(2011)]
          Length = 625

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 153/522 (29%), Positives = 264/522 (50%), Gaps = 41/522 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG   VLEVD +  +   L+  S+++RS L+ E I
Sbjct: 103 NLAQTTPDWLRSIGAKPLKLGLDLRGGVRFVLEVDMNKALEQRLKTTSNDVRSSLRGERI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            V  +  I   + L F D+  ++     +               +   L+      + + 
Sbjct: 163 PVKGINVIDQGLLLHFKDTDLRDKAQRIIQ-------RDEGTQFEMQALMDDQGPALRLN 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++  +A+ Q++  +R RI ++G+SE+ +Q  GS+RI+++LPG QD +  +++L
Sbjct: 216 YNEATLKEINEYAVGQNLTTLRNRISELGVSEALVQSQGSNRIVVELPGVQDTAEAKRVL 275

Query: 207 GTTAKMSFHKVLPNNSK-----KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V   N+                   DG   L+  +  ++G  +     + 
Sbjct: 276 GRTANLEFRLVADENASYAGGVPPAGTEAFPYMALDGPPSLLNRQPILTGEKV-QGATSG 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296
             +   P V+I+ D  G +     T++ +GK +                           
Sbjct: 335 LDENGSPEVNITLDTAGGKLMQNATKNAVGKQMAVLFIENKQKVTYDKDPKTGETVETRT 394

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +    QA+     +I+G  +   A  LA +LR+G+L   +  VEER +G  L
Sbjct: 395 PYAETKIISQANIQAVLGSSFRITGLNSNAEAAELALLLRSGALAAPMYFVEERTIGPSL 454

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G  +I  G  +   G +L+ LFMIV Y  +G++A+ ++  N+++ +A+LS+LGA+LTLP 
Sbjct: 455 GQKNIDDGLFSTKVGYLLVFLFMIVFYRLFGVIANIALAFNLVIMVAVLSILGASLTLPG 514

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL IG+AVD+N+L+ ERIREE  +      ++  GF RA+S+IFD NIT L+  ++
Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREEIAEGVRPKSAIVAGFDRAFSSIFDGNITTLLVAII 574

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           LF  G G ++GFA+T+ + IL S+FTAI + RA++  +   +
Sbjct: 575 LFSIGSGPIKGFAVTLAIGILSSLFTAIVVTRALVHLVYGNR 616



 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 78/185 (42%), Gaps = 4/185 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                   +GP + ++ I  G+    +  + + +++ + ++  F + A   L  ++   +
Sbjct: 442 MYFVEERTIGPSLGQKNIDDGLFSTKVGYLLVFLFMIVFYRL-FGVIANIALAFNLVIMV 500

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++ G    L  +A ++  IG +V+  V++++R+R+ +         +  I    +  
Sbjct: 501 AVLSILGASLTLPGIAGIVLTIGMAVDANVLIFERIREEIAEGVR---PKSAIVAGFDRA 557

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                  ++   +  + +   G   I  FA+ +A GI+ +  ++I +   ++  +Y  R 
Sbjct: 558 FSSIFDGNITTLLVAIILFSIGSGPIKGFAVTLAIGILSSLFTAIVVTRALVHLVYGNRK 617

Query: 829 KNARI 833
              ++
Sbjct: 618 SVDKL 622



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 29/119 (24%), Gaps = 25/119 (21%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M    W   L   +  I  L ALPN  P                             +++
Sbjct: 1   MHYPAWKYFLIVTVLIIAGLYALPNLYPDEPA-------------------------VQI 35

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                          + +  L++ GI        +N   L   D   +    + +   L
Sbjct: 36  TSASAGTELTDDVLTQSKKLLEEAGIAYHDPTFSENSALLRVEDGAAQRKAQEVLRQQL 94


>gi|270263601|ref|ZP_06191870.1| multidrug/solvent efflux pump membrane transporter mepB [Serratia
           odorifera 4Rx13]
 gi|270042485|gb|EFA15580.1| multidrug/solvent efflux pump membrane transporter mepB [Serratia
           odorifera 4Rx13]
          Length = 1048

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 61/550 (11%), Positives = 155/550 (28%), Gaps = 41/550 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIVMLAGVLAIM-----KLPIAQYPTIAPPA-------------VSISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQIIEQNMNGIDNLMYMSSTSDSSGSVTITLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  L         ++++    D       + +  +     D I  S
Sbjct: 110 KLSLATPLLPQEVQQQGLKVEKSSSSFLMVAGFISDDPNMTQDDIADYVASNIKDPISRS 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L     TT  ++      NN       G        
Sbjct: 170 QGVGEVQLFGAQ-YAMRIWLDPGKLNNFQLTTTDVTSAITEQNNQIAAGQLGGMPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I +     
Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGKILLKVNTDGSQVRLKDVARIERGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        ++         +           
Sbjct: 276 AVTARYNGKPAAGLGIKLATGANALNTAKAVKDALTKMQPFFPQGMKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SINEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +++  +            + 
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVQKGDHGAKTGFFGWF 515

Query: 534 IPDCIAIQFM 543
                     
Sbjct: 516 NRMFEKSTHH 525



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   ++ +        L        +++   + ++    K+    
Sbjct: 258 SQVRLKDVARIERGGESYAVTARYNGKPAAGLGIKLATGANALNTAKAVKDALTKMQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPFVKISINEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   
Sbjct: 436 EQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 76/249 (30%), Gaps = 10/249 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +   + + V  S   S         +   N       L +       
Sbjct: 777  PFRMLPEDINKWFVRGTSGQMVPFSAFSSAKWEYGSPRLERYNGLPSMEILGQAAPGKST 836

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + E+  K  + I    T  + +              +  + I  +  L    + 
Sbjct: 837  GEAMNMMEELSSKLPSGIGYDWTGMSYQERLSGNQAP----ALYAISI-LVVFLCLAALY 891

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  L L +   L    + G+  ++     +LT IG S  + +++ +  +  
Sbjct: 892  ESWSIPFSVMLVLPLGVIGALLAATMRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDL 951

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            M          +   +++   L   + TS+A  + VLP+ +    G     +    +  G
Sbjct: 952  MDKEGKG--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGG 1009

Query: 805  IVVAASSSI 813
            ++ A   +I
Sbjct: 1010 MITATVLAI 1018


>gi|294788537|ref|ZP_06753779.1| protein-export membrane protein SecF [Simonsiella muelleri ATCC
           29453]
 gi|294483414|gb|EFG31099.1| protein-export membrane protein SecF [Simonsiella muelleri ATCC
           29453]
          Length = 312

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 97/304 (31%), Positives = 164/304 (53%), Gaps = 4/304 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP-V 589
             L      I FM        IS++  I ++  L T GLNY ++F GG  + V   +   
Sbjct: 1   MELFHFKRDIPFMSYGKLTTFISLVTFILAVFFLVTRGLNYSVEFTGGTLMEVEYQQQGA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL  VR +L+ L +G+I  Q     K+ ++RL  +     AQ  +   V +K+      +
Sbjct: 61  DLDKVRHSLDGLGLGEIQVQALGTNKHIMIRLPNKSDIPSAQ--LSNQVMEKLKADRSDA 118

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E +GP +  EL+  G++ + +  I +++Y+ +RF+W FA+ AI   + D+   LG
Sbjct: 119 NLRQVEFIGPSVGEELVSNGLLAMGMVVIGIIVYLSMRFEWRFAVSAIIANMHDVVIILG 178

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINET 768
            FA F  EF+LT +  VL ++GYSVN+ VVV+DR+R+N +  T  + +  ++ID +I  T
Sbjct: 179 CFAFFRWEFSLTVLTGVLAVLGYSVNESVVVFDRIRENFRKGTMRNKTVHEIIDNAITAT 238

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +GR+V T  +    V+ M ++GG+ +  FA+ +  GIV    SS+ +A+P+LL     R 
Sbjct: 239 MGRTVITHGSTEAMVVSMLIFGGAALHGFAMALTIGIVFGIYSSVLVASPLLLMFGLNRD 298

Query: 829 KNAR 832
              +
Sbjct: 299 NVIK 302


>gi|257126594|ref|YP_003164708.1| protein-export membrane protein SecF [Leptotrichia buccalis
           C-1013-b]
 gi|257050533|gb|ACV39717.1| protein-export membrane protein SecF [Leptotrichia buccalis
           C-1013-b]
          Length = 323

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 84/292 (28%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R   +GIS +  I S+  LF   LN G+DFKGG  + +   + +D + V S L  L   
Sbjct: 10  RRKLYLGISAVMVIVSLVSLFAIKLNLGVDFKGGELIQLKYEKKIDQNAVNSTLSGLVGE 69

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
               +    + +              +      V  ++++      +   E VG  I +E
Sbjct: 70  IPQMKAKRVQFSDTDNTVI-IRTEQLKDTQKAKVMSELSQKTGKYEVVKNETVGAVIGKE 128

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L    I  ++I +I ++IYI +RF++ +A+  I  LI D+    G  A+   E +   +A
Sbjct: 129 LTSNAIQALLIGSILIIIYITVRFEFIYAVAGIVALIHDVIIAFGVIAMLKYEIDTPFIA 188

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-----SFRDLIDKSINETLGRSVYTSMAA 779
           A+LT++GYS+ND +VV+DR+R+N+K           SF ++I+KSIN+   RS+YTS+  
Sbjct: 189 AILTILGYSINDTIVVFDRIRENIKRNREGRNKVTQSFGEVIEKSINQVFTRSIYTSLTT 248

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             SV+ + + GG  + +F++ +  G++V   SS+F+A+P++  +   + +  
Sbjct: 249 LFSVIVLLILGGDTLKTFSMTLFIGMLVGTYSSVFVASPLVYIMKKGKNEPK 300


>gi|326791641|ref|YP_004309462.1| protein-export membrane protein SecF [Clostridium lentocellum DSM
           5427]
 gi|326542405|gb|ADZ84264.1| protein-export membrane protein SecF [Clostridium lentocellum DSM
           5427]
          Length = 310

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/298 (26%), Positives = 134/298 (44%), Gaps = 5/298 (1%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
             +   A    V +  L  +    +      N  I+F GG  + V   RP + + +RS L
Sbjct: 6   NRKKYYAISIIVILIGLVFMVMNAVRGQGAFNQDIEFTGGSLIQVNMERPFN-NELRSEL 64

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            ++                   +        A TR       K    +        E   
Sbjct: 65  LAITEEVTGNTGARITSAGDTGVLITMTREDASTRKELFEAIKEKYDLKDDIALRDEDFS 124

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIE 717
           P IS+++    I  V++    +L+Y+  RFK + F   A+  L  D+   L  +A+F I 
Sbjct: 125 PTISKDIKVGAIKAVVVGIALILVYVSFRFKDYRFGTSAVIALAHDVLVMLSVYAIFRIP 184

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKN---MKLYTTSISFRDLIDKSINETLGRSVY 774
            N + +AA+LT++GYS+ND +V++DR+R+N   + L   + +  +L+D SIN+T+GRS+ 
Sbjct: 185 LNNSFIAAMLTIVGYSINDTIVIFDRIRENKEKVGLKDHAAANEELVDSSINQTIGRSIA 244

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           TS+   + V+ +   G   +  FA P+  GI+    SSIF+A+PI       +    +
Sbjct: 245 TSLTTVVMVILLFALGTDSVKDFAFPLIIGILAGTYSSIFVASPIWYEFTHRKGNKVK 302


>gi|167031893|ref|YP_001667124.1| preprotein translocase subunit SecD [Pseudomonas putida GB-1]
 gi|166858381|gb|ABY96788.1| protein-export membrane protein SecD [Pseudomonas putida GB-1]
          Length = 620

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 167/525 (31%), Positives = 273/525 (52%), Gaps = 41/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD D  +   +++Y  E+++ L+KE I
Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERI 165

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q    I L FAD   +E     +             D             + + 
Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARVLIRKNFN--------DFDLTTTERNELAVLRLA 217

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F       + K       F     G    VE  + I+G  +  A A+FD    
Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAPVERGLIITGDQVTDAQASFDEHG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+I  D  G       TR N+G+ +AV+   +      +                  
Sbjct: 335 RPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQTVDGVEKDVAVQSFVE 394

Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+I +Y  +G++A  ++  N++L LAL+SLLGATLTLP IAG
Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRGFGVIATIALAGNMVLLLALMSLLGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE +   SV  ++  GF+RAY+ I D+N+T+L+   +LF 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREELKAGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G G V+GFA+TM L I  SMFTA+ + RAM+      + +K + 
Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVNLTCGGRDIKKLW 619



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 91/250 (36%), Gaps = 5/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +     V +       + +    +    ++ L       G +         +  +
Sbjct: 372 VTRYVKQTVDGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   ++  F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-GFGVIATIALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +K     +S +  I
Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELKA---GMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820
            +  N      +  ++ + +    +   G   +  FA+ M+ GI  +  +++ +   ++ 
Sbjct: 548 HEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVN 607

Query: 821 LFIYDWRAKN 830
           L       K 
Sbjct: 608 LTCGGRDIKK 617



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 17/121 (14%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W   L  ++  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117
            D      +        + L ++G G+  +   ++++     +  A         +    
Sbjct: 51  LDRVSKALVDAKITVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQT 110

Query: 118 F 118
            
Sbjct: 111 T 111


>gi|157371729|ref|YP_001479718.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Serratia
           proteamaculans 568]
 gi|157323493|gb|ABV42590.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Serratia
           proteamaculans 568]
          Length = 693

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 191/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAIF-----SLPVEQYPNLAPP-------------NVRISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +     +   S +     +  +TL+F           +V  
Sbjct: 50  PGASAQTLENTVTQIIEQNMTGLDNMMYMSSQSTNTGRATVTLTFEAGTDPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L    +   +  +   + ++++             + +  I+    D +   
Sbjct: 110 QLQAAIKRLPQAVQTQGVTVSKSGDTTLMMVAFVSTDGSMDKQDIADYIVSNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     TT  +       N        G     D  
Sbjct: 170 NGVGSMDVYGSQ-YAMRIWLDPNKLNSYQLTTQDVVSAIQSQNAQVAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEQFQKITLRVNQDGSLVTLGDVATIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +   T +      A L           V          
Sbjct: 276 DYLSRYNGMQAAGMNIKLASGANELQTDQLVKDKIAELSQYFPHGLEAKVAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIKDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAILSACGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +  S +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPRDATRKSMGQIQSALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPIAKGHHHGKRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A     +  + V   +L    ++  +         + +G   + V
Sbjct: 516 NRMFNRNADRYERGVARVLHSSVRYIVIYLLLLGGMALLFIKLPTSFLPQEDRGVFTVQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L      +E ++   ++ +  D    F        G+     R+   +K    
Sbjct: 576 QLPPGSTLQQTTKVVEKVEHYFLTKEKQDVLSVFSTIGAGPGGNGQNVARMFIRLKDWDL 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                ++  +      K   ++I   ++ 
Sbjct: 636 RTSGANSSFDIIDRATKEFNQIIEARVIA 664



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 90/241 (37%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +    +   +        + +   ++++    ++++  P 
Sbjct: 260 VTLGDVATIELGGENYDYLSRYNGMQAAGMNIKLASGANELQTDQLVKDKIAELSQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEAKVAYETTPFVKASIKDVVKTLLEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               +  G   N   + A++  IG  V+D +VV + +     +    +S RD   KS+ +
Sbjct: 380 FAILSACGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPRDATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQSALVGIAMVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|302561711|ref|ZP_07314053.1| protein-export membrane protein SecF [Streptomyces griseoflavus
           Tu4000]
 gi|302479329|gb|EFL42422.1| protein-export membrane protein SecF [Streptomyces griseoflavus
           Tu4000]
          Length = 372

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 90/309 (29%), Positives = 147/309 (47%), Gaps = 13/309 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    +   F++ R    GISIL +I +I  L   GL+ GI+F+GG       N  V +
Sbjct: 10  RLHHGEVGYDFIKNRKIWYGISILITITAIVGLAVRGLHMGIEFQGGAVFTTPKNMSVSV 69

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +      E     D   Q         +R+Q    D+    ++ E + K +         
Sbjct: 70  ATAEGYAEDASGHDAIVQKLGDG---SLRIQVAGIDTGTSDKIKETLAKDLKVDGE---Q 123

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            N E+VGP    ++  K   G+ I  + ++IY+ I F+W  A+ A   LI DIT T+G +
Sbjct: 124 INAELVGPSWGEQIANKAWQGLGIFLVLVVIYLAIAFEWRMAVAAFVALIHDITITVGIY 183

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           AL G E     V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ ++SIN TL
Sbjct: 184 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDITKQTRWTYSEIANRSINSTL 243

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RSV T++ A + V  +   GG V     +   ++ +  G+   A SSIFIA P++  + 
Sbjct: 244 VRSVNTTVVALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLK 303

Query: 825 DWRAKNARI 833
           +       +
Sbjct: 304 ELEPSMKSL 312


>gi|146306951|ref|YP_001187416.1| acriflavin resistance protein [Pseudomonas mendocina ymp]
 gi|145575152|gb|ABP84684.1| acriflavin resistance protein [Pseudomonas mendocina ymp]
          Length = 1022

 Score =  197 bits (501), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 70/584 (11%), Positives = 165/584 (28%), Gaps = 39/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++  +GL+        +  +  +P+                  +     
Sbjct: 9   RRPVFATVLSLIVVLLGLMA-----YDRLNVREYPNIDVPIVT---------VQVTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +++ S ++         R    +IT  F   R  +  A+ V   L  
Sbjct: 55  SPEIMESQVAQPVEDVLSGIEGLDFVTSISRAENTQITAQFRLGRSADEAANDVRDHLGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +  + ++         ++    + +     A+E +  + R   D++       
Sbjct: 115 VRNLLPDEVDEPIVQKVEADAQPVIWIAFHSE--QHSAMEITDVLERVIKDRLQTIPGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     T   +       N          R    S  ++ 
Sbjct: 173 EVQVRGARTFSMRIWLDPEKLAAHNLTVQDVEDALRRQNVEIPAGRIESREREFSVLSET 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                      ++  D+                         
Sbjct: 233 DLRTPAQF--------------------NELILDDSQDYLLRLSDVGRAEIGPRDERTVV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +     +        ++A         V   N      S   
Sbjct: 273 RFKGLPAVTLGLVKQATANPLDISDGLEAAWDDVKALLPEGMNMTVANDNSQFIRESIDN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++++F+ +   +  L+   +I +++I   AL+SL+G T+   ++  +V
Sbjct: 333 VFATIWEAVALVILIIFIFLRSLRATLIPLVTIPVSLIGAFALMSLMGFTINTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I++ E I            +   G       +    +T       + F  
Sbjct: 393 LAIGLVVDDAIVMLENIHRHIEAGMKPMQAAFKGSREIAFAVIAMTLTLAAVFAPIGFMQ 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA T+  S+L+S F A+++   M   +++  + +       +      + +
Sbjct: 453 GTTGKLFTEFAWTLAGSVLVSGFVALTLTPMMCAVLLKPHQHEQRHSRVYNLIEGFLNGL 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +  +    +    L     +         +           
Sbjct: 513 TYSYKHSLDRALRAWPLVLGVLLAAFVLCAWLFSGLRSELAPTE 556



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 74/212 (34%), Gaps = 12/212 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S       + VK  + E + ++   +      +    +       V +  + + I++   
Sbjct: 296 SDGLEAAWDDVKALLPEGMNMTVANDNSQFIRESIDNVFATIWEAVALVILIIFIFL--- 352

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  + T+ + +       +L G   N   + A++  IG  V+D +V+ + +   
Sbjct: 353 RSLRATLIPLVTIPVSLIGAFALMSLMGFTINTLTLLAMVLAIGLVVDDAIVMLENIH-- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
            +     +       K   E     +  ++       P+    G+       FA  +A  
Sbjct: 411 -RHIEAGMKPMQAAFKGSREIAFAVIAMTLTLAAVFAPIGFMQGTTGKLFTEFAWTLAGS 469

Query: 805 IVVAASSSIFIAA---PILLFIYDWRAKNARI 833
           ++V+   ++ +      +LL  +    +++R+
Sbjct: 470 VLVSGFVALTLTPMMCAVLLKPHQHEQRHSRV 501



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 81/243 (33%), Gaps = 9/243 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D       L +L     +    +      +R      +  A   + E +         + 
Sbjct: 770  DREGGMVQLSNLISVRETVAPRELNHFNQLRAVTISANVGAGYTLGEALDYLEAGARAVF 829

Query: 650  TIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
              +                  + +I   +   + + +  +F+ +   L  + ++ L +  
Sbjct: 830  PPETQYDYTGTSRDFKESSSGIALIFTLALAFIFLVLAAQFESFSDPLIILFSVPLSMAG 889

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L    LFG   N+ +   ++TLIG      +++ +       L       R  + ++  
Sbjct: 890  ALLALTLFGGTLNIYSQIGLVTLIGLITKHGILIVEFAN---HLLREGRELRGAVIEASV 946

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            + L   + T+ A  +  LP+A+    G        + +  G++V    ++++   + L +
Sbjct: 947  QRLRPILMTTGAMVLGSLPLAIATGAGAESRQQIGLVIVGGLLVGTFFTLYVIPTLYLLL 1006

Query: 824  YDW 826
              W
Sbjct: 1007 RRW 1009


>gi|332284299|ref|YP_004416210.1| Solvent-resistant pump membrane transporter Srp [Pusillimonas sp.
           T7-7]
 gi|330428252|gb|AEC19586.1| Solvent-resistant pump membrane transporter Srp [Pusillimonas sp.
           T7-7]
          Length = 1048

 Score =  197 bits (500), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 180/686 (26%), Gaps = 42/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L           ++++P+                  +      
Sbjct: 8   RPIFAWVLAIVIMLAGALSIF-----GMPVNQYPNIAAPAI---------SVSVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L              +  + L+F      +    +V   LQ 
Sbjct: 54  AQTVQDTVVQVIEQKMNGLDGLRYMSSESNSDGSMSVILTFEQGIDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +     +   +++     +     A + S  I     D I  +E   
Sbjct: 114 ATPLLPEEVQRQGIRVAKYQANFMLVVSLVDESGRMDAADLSDYIATNFQDPISRTEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    DP +L     T   ++      N        G            
Sbjct: 174 DFMLFGSQ-YAMRIWLDPEKLNSFALTPGDVANAIRTQNVQVASGQLGGLPTAKGVQLTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        I           
Sbjct: 233 TIIGKTRL-------------QTIPEFENILLKVNPDGSQLRLRDVSEITLGAENFSISS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T+E    +   L A        +           S   
Sbjct: 280 EYNGNPSSGMALRLASGGNLLETVERVEGVIGKLEAFLPDGLKIVYPYDTTPVVEASIDS 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +LS  G T+ + ++  +V
Sbjct: 340 VVHTLFEAIVLVFLVMYLFLQNFRATLIPTLAVPVVLLGTFGILSAFGFTINILTMYAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMVEEGLSAREATRKSMGQIQGALVGIGVVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
           GG      + FAIT+  ++ +S+  A+    A+   +          +       +    
Sbjct: 460 GGSAGIIYKQFAITIVSAMGLSVLVALIFTPALCATMLKPSTAEHHNKKGFFGWFNRVFD 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +         + V   ++    ++            + +  + + V     
Sbjct: 520 RGNNRYQRSVTGMLKHRGRYMVVFVLIVGGLAVLFSRIPTTFLPEEDQSIMFVQVQTPSN 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                  + L+ +    ++ ++   E    V+     G           +K        +
Sbjct: 580 SSAERTGAALDEVTNYLLNEESGMVESVMTVKGFSFAGRGQNSGIAFVKLKPWEEREGDV 639

Query: 649 STIQNTEIVGPKISRELIRKGIVGVI 674
           + + +          ++        +
Sbjct: 640 TDVFSLAQRSGVRFAQIKDATAFAFV 665



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 86/231 (37%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +   IS +      + +       G+ +     +E V  K+   +P     
Sbjct: 264 DVSEITLGAENFSISSEYNGNPSSGMALRLASGGNLLETVERVEGVIGKLEAFLPDGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                   +    I   +  +  + + + + +++  + +   L     + + +  T G  
Sbjct: 324 VYPYDTTPVVEASIDSVVHTLFEAIVLVFLVMYLFLQNFRATLIPTLAVPVVLLGTFGIL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           + FG   N+  + A++  IG  V+D +VV + +     +    +S R+   KS+ +  G 
Sbjct: 384 SAFGFTINILTMYAMVLAIGLLVDDAIVVVENV--ERVMVEEGLSAREATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819
            V   +      +PMA +GGS   +   FAI +   + ++   ++     +
Sbjct: 442 LVGIGVVLSAVFVPMAFFGGSAGIIYKQFAITIVSAMGLSVLVALIFTPAL 492



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 64/167 (38%), Gaps = 8/167 (4%)

Query: 673  VIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            ++ +   +++++ +      W      +  + L +   +    L G+  ++     +LT 
Sbjct: 872  MLYALTVLIVFLSLAALHESWSVPASVMLVVPLGVIGAVIATLLRGLSNDVFFQIGLLTT 931

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G S  + +++ +  ++  +      +      ++    L   + TS+A    VLPMA+ 
Sbjct: 932  VGLSAKNAILIVEFAKQLYEQE--GRTLVQAAVEAAKLRLRPIIMTSLAFTFGVLPMALA 989

Query: 790  GG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G       + A  +  G++ A   +IF      + +     K   +
Sbjct: 990  SGAGQGSQHAIATGVVGGMITATVLAIFFIPLFFVVVMSLSKKKTPV 1036


>gi|332978345|gb|EGK15070.1| RND superfmily multidrug/dye/detergent efflux pump AcrB
           [Psychrobacter sp. 1501(2011)]
          Length = 1074

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 81/692 (11%), Positives = 205/692 (29%), Gaps = 51/692 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++  +        ++++P   P               + +    
Sbjct: 8   RPIFAWVISILIMLLGVISVI-----NLPIEQYPRIAPPT-------------INVSASY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S       +TL+F +    +    +V  
Sbjct: 50  PGANAQTVEDSVVQVIEQRMKGLDGLMYMSSSSSSNGSGSVTLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  +  T      +++     +      ++ +  +    +DQI   
Sbjct: 110 KLQAAMSALPESVQRQGVNVTKSSSSFLMVQGFISEDGSMDGVDIADYVASNIVDQISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP+RLR      + +       N        G       +
Sbjct: 170 EGVGEVQLFGS-SYAMRVWLDPARLRSYNLVPSDVVDAIRAQNAQVSAGQLGQAPADVEN 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                         I+      ++     +    +   +    +        +       
Sbjct: 229 QV------------INATVTVQSYLKTPEEFSNILLKTDNSGAQVRLRDVAKVEVGSENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +      +    S     +   T +      A L A   P   ++V          
Sbjct: 277 GIKALYNGKEASGIGISLAPGSNALDTRQLVEDRMAQLEANFPPGLTSVVPYDTTPFVKL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++   ++ + ++ T A+L + G ++ + ++
Sbjct: 337 SIEQVVRTLVEAIILVFLVMFLFLQNWRATIIPTLAVPVVLLGTFAVLYVAGFSINVLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             +VL IGL VD  I+V E +     ++        ++      +   I  + I + +  
Sbjct: 397 FAMVLSIGLLVDDAIVVVENVERLLEEHPDLTVKEATIQSMGEISKVVIGIALILSAVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSI 523
            + FF G      R F+IT+  S+++S   A+    A+ + +          +       
Sbjct: 457 PMAFFGGSTGVIYRQFSITLITSMVLSAIVALVFTPALCVTLLKRSKNHGEEKKGFFGWF 516

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +           I         + +  + +  I ++  L   G     + +G +   V
Sbjct: 517 NRSFEKTSRNYERFIGKSINVKWLYALAYAAIIGIMAVLFLRIPGSFLPEEDQGIMVTLV 576

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 ++   ++ L+ +     + +  + E  F V      G           +     
Sbjct: 577 QLPAGSNIEETQAVLDKVDAYYHTQEGKNIESVFTVAGFSFAGQGQNMGLAFVRLSDWEN 636

Query: 644 EIVPLSTIQNT-EIVGPKISRELIRKGIVGVI 674
                ++ Q   E        +L    +  ++
Sbjct: 637 RSGEENSAQAVAERAMGYFFTQLNEAQVYAIV 668



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 93/252 (36%), Gaps = 5/252 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       +   I       E + +        +++   +++E    ++ 
Sbjct: 256 NSGAQVRLRDVAKVEVGSENYGIKALYNGKEASGIGISLAPGSNALDTRQLVEDRMAQLE 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P               +  I + +  ++ + I + + +++  + W   +     + +
Sbjct: 316 ANFPPGLTSVVPYDTTPFVKLSIEQVVRTLVEAIILVFLVMFLFLQNWRATIIPTLAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     + G   N+  + A++  IG  V+D +VV + + + +      ++ ++   
Sbjct: 376 VLLGTFAVLYVAGFSINVLTMFAMVLSIGLLVDDAIVVVENV-ERLLEEHPDLTVKEATI 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     +  ++      +PMA +GGS       F+I +   +V++A  ++     +
Sbjct: 435 QSMGEISKVVIGIALILSAVFVPMAFFGGSTGVIYRQFSITLITSMVLSAIVALVFTPAL 494

Query: 820 LLFIYDWRAKNA 831
            + +      + 
Sbjct: 495 CVTLLKRSKNHG 506



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 82/256 (32%), Gaps = 13/256 (5%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
             D      +       +       +        ++  N     N             A T
Sbjct: 783  PDDIQKWYVRNNNGEMISFDAFSDSEWQYASPRLTRYNSFPSMNIQGSAAPGLSTGEAMT 842

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             + +MV +    I    T  + E         ++        +S + + + +   ++ + 
Sbjct: 843  AMEQMVGQLPEGIGFEWTGMSLEEKKSGAQAPMLY------ALSILVVFLCLAALYESWS 896

Query: 693  ALGAITTLILDITKTLGFFALFG-IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
               A+  ++         F  F     ++     +LT++G S  + +++ +  ++     
Sbjct: 897  IPFAVLLVVPLGVLGAVLFTWFRDFANDIYLQVGLLTVVGLSAKNAILIIEFAKE---HQ 953

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                S RD +  +  + L   + TS+A  + VLP+ +    G     +    +  G+V A
Sbjct: 954  EAGNSLRDAVMLAARQRLRPIIMTSLAFGLGVLPLFLATGPGAGSQNAIGTSVVGGVVTA 1013

Query: 809  ASSSIFIAAPILLFIY 824
                IF      +++ 
Sbjct: 1014 TLLGIFFIPMFYVWVR 1029


>gi|319787467|ref|YP_004146942.1| protein-export membrane protein SecD [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465979|gb|ADV27711.1| protein-export membrane protein SecD [Pseudoxanthomonas suwonensis
           11-1]
          Length = 613

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 149/517 (28%), Positives = 268/517 (51%), Gaps = 37/517 (7%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
           S +  +   +    + LGLDL+GG H VL+VD++  +   +  Y++++R  L+ + I   
Sbjct: 106 STVPDWLDRIGAKPMVLGLDLQGGVHFVLQVDQNAALEKRVDAYAEDVRVTLRDKRIRYT 165

Query: 90  SMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
           ++ +  +  I  +       E     +   +  +N +L                + + + 
Sbjct: 166 AVDRRPDHTIVATLGTGTDPEQARTTLAQAMPAMNVEL------------QGNRLVVRIP 213

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
              ++Q+   AIEQ++  +R R++++G++E  IQR G  RI++QLPG QD +  ++++G 
Sbjct: 214 DAELNQIAGSAIEQNIATLRNRVNELGVAEPIIQRQGEERIVVQLPGVQDTAEAKRMIGA 273

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRD-----SDGNQYLVEDKVEISGIHLNGATANFDP 263
           TA + +  V+  N+      G            DG+  L+  +V ++G  +  A ++ D 
Sbjct: 274 TATLEYRAVIEGNAMDAVSTGRVPPEAKVYYRRDGSPVLLSKRVIVTGDQMVAAQSSVDQ 333

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
                 V ++ + +G  R F+ T  ++GKP+AVV   RV    V+N              
Sbjct: 334 NGLPA-VSVTLNNVGGDRMFDFTSASVGKPMAVVYTERVPQVKVVNGEEVRSFRVKEEVI 392

Query: 324 TIE------------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           ++                    A  LA +LRAGSL   ++ VEE+ VG  LG +++ +G 
Sbjct: 393 SVANINGVFGKNFQTTGLEKTEADDLAKLLRAGSLAAPMDFVEEKIVGPSLGKENVQRGV 452

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A++   +  ++F  V Y  +G++   ++  N+++ +A++SL GAT+TLP  AG+ L IG
Sbjct: 453 TAVLYAFLFTLVFFAVYYRMFGVLTGIALMFNLLIVVAVMSLFGATMTLPGFAGLALSIG 512

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           L+VD+N+L+NERIREE R       ++  G+ +A  TIFD+N+T ++A V L+ FG G +
Sbjct: 513 LSVDANVLINERIREELRAGVPPKAAIANGYEKASGTIFDANLTGILAGVALYAFGTGPL 572

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +GFA+TM + I  SMFTAI++ RA+ + +   +K   
Sbjct: 573 KGFAVTMVIGIFASMFTAITVSRALAVLLYSRRKKLK 609



 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 98/254 (38%), Gaps = 4/254 (1%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V+    V    V +  E                N +    +Q               
Sbjct: 362 PMAVVYTERVPQVKVVNGEEVRSFRVKEEVISVANINGVFGKNFQTTGLEKTEADDLAKL 421

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +   +         +IVGP + +E +++G+  V+ + +  L++  + ++  F +     
Sbjct: 422 LRAGSLAAPMDFVEEKIVGPSLGKENVQRGVTAVLYAFLFTLVFFAVYYRM-FGVLTGIA 480

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L+ ++   +   +LFG    L   A +   IG SV+  V++ +R+R+ ++     +  + 
Sbjct: 481 LMFNLLIVVAVMSLFGATMTLPGFAGLALSIGLSVDANVLINERIREELRA---GVPPKA 537

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            I     +  G     ++   ++ + +  +G   +  FA+ M  GI  +  ++I ++  +
Sbjct: 538 AIANGYEKASGTIFDANLTGILAGVALYAFGTGPLKGFAVTMVIGIFASMFTAITVSRAL 597

Query: 820 LLFIYDWRAKNARI 833
            + +Y  R K   +
Sbjct: 598 AVLLYSRRKKLKSL 611


>gi|112182849|emb|CAL18626.1| AcrB protein [Enterobacter cloacae]
 gi|148807120|gb|ABR13271.1| AcrB [Enterobacter cloacae]
          Length = 1048

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 65/685 (9%), Positives = 172/685 (25%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +          +           S   
Sbjct: 280 KFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFFPSGLKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L++ G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAIFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G      R F+IT+  ++ +S+  A+ +  A+   +                   +   
Sbjct: 460 SGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGGHGEHKGFFGWFNRMF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + +   I+    +   +         + +G          
Sbjct: 520 DKSTHHYTDSVGNILRSTGRYLLLYIIIVVGMAFLFVRLPSSFLPDEDQGVFLSMAQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +    ++ +  + E  F V      G           +K        
Sbjct: 580 GATQERTQKVLDEMTDYFLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSERPGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            + ++            +    +  
Sbjct: 640 ENKVEAITGRAMGTFSHIKDAMVFA 664



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  +      + L        +++     +    KK+    
Sbjct: 258 SQVRLRDVAKVELGGENYDIIAKFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A+FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAIFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA + GS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFSGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMNLMEELASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|300935393|ref|ZP_07150391.1| putative ATP synthase F0, A subunit [Escherichia coli MS 21-1]
 gi|300459371|gb|EFK22864.1| putative ATP synthase F0, A subunit [Escherichia coli MS 21-1]
          Length = 1035

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q        R        +     + L+        +  +   ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGTENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 42.0 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|297626356|ref|YP_003688119.1| Protein-export membrane protein secF [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922121|emb|CBL56689.1| Protein-export membrane protein secF [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 415

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 143/322 (44%), Gaps = 13/322 (4%)

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +           L        F+  R     ISI+  + S+  L   GLN GI+FKGG  
Sbjct: 20  RKGKYTGNFAHRLYTGEFEFNFVARRKLWYSISIVLIVISLAALLFRGLNLGIEFKGGSV 79

Query: 581 LGVL--ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             V   +     +  VR  ++  ++ D++           VR+Q +   +   T++ + +
Sbjct: 80  FTVPVSSTSSQSVDQVRKAVDESKVPDLTGAQATAVGTGTVRVQVRSLSTDEVTQMRDAL 139

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
              +             ++GP    ++  K    +I+  + + + IW  F+ W  A+ A+
Sbjct: 140 ASTV---NTTPDKVGYSLIGPSWGGQITMKAFQALIVFLVLVALMIWAFFREWRMAISAL 196

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-IS 756
             LI D+  T+G +AL G     + +  VLT++GYS+ D VVV+D++R+N    T    +
Sbjct: 197 VGLIHDLIVTVGLYALIGFTVTPSTLIGVLTILGYSLYDNVVVFDKVRENTVDITKQDRT 256

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG------SVIGSFAIPMAFGIVVAAS 810
           F +  + ++N+ L RS+ T++   + V+ + + G         +    + +  G+V  A 
Sbjct: 257 FSEAANAAVNQVLVRSINTTVIGVLPVIALLIAGVGFLGGDGPLADLGLALLIGMVAGAY 316

Query: 811 SSIFIAAPILLFIYDWRAKNAR 832
           SSIFIA P+L  + +      +
Sbjct: 317 SSIFIATPLLTQLREREPDMKK 338


>gi|293414624|ref|ZP_06657273.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           B185]
 gi|331652336|ref|ZP_08353355.1| multidrug efflux protein [Escherichia coli M718]
 gi|291434682|gb|EFF07655.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           B185]
 gi|331050614|gb|EGI22672.1| multidrug efflux protein [Escherichia coli M718]
          Length = 1035

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 187/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592
               Q       R     + +   +     L    L           ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 42.8 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 75/253 (29%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYDWRAKNAR 832
             + +    A  +R
Sbjct: 1020 FVLVKRLFAGKSR 1032


>gi|260891455|ref|ZP_05902718.1| protein-export membrane protein SecF [Leptotrichia hofstadii F0254]
 gi|260858838|gb|EEX73338.1| protein-export membrane protein SecF [Leptotrichia hofstadii F0254]
          Length = 323

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 82/292 (28%), Positives = 149/292 (51%), Gaps = 6/292 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R   +GIS +  I S+  LF   LN G+DFKGG  + +   + +D + V   L SL   
Sbjct: 10  RRKLYLGISAVMVIVSLVSLFAIKLNLGVDFKGGELIQLKYEKKIDQNAVNGTLNSLVGE 69

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
               +    + +                     +  ++++      +   E VG  I +E
Sbjct: 70  IPKLKAKRVQFSDTDNTVI-IRTEQLDNTQKTKIMSELSKKTGKYEVVKNETVGAVIGKE 128

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L    I  ++I +I ++IYI +RF++ +A+  I  L+ D+    G  A+   E +   +A
Sbjct: 129 LTSNAIQALLIGSILIIIYITVRFEFIYAVAGIVALVHDVIIAFGVIAMLKYEIDTPFIA 188

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-----SFRDLIDKSINETLGRSVYTSMAA 779
           A+LT++GYS+ND +VV+DR+R+N+K           SF ++I+KSIN+   RS+YTS+  
Sbjct: 189 AILTILGYSINDTIVVFDRIRENIKRNREGRNKVTLSFGEVIEKSINQVFTRSIYTSLTT 248

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             SV+ + + GG  + +F++ +  G++V   SS+F+A+P++  +   + +  
Sbjct: 249 LFSVIVLLILGGDTLKTFSMTLFVGMLVGTYSSVFVASPLVYIMKKGKNEPK 300


>gi|91210587|ref|YP_540573.1| acriflavine resistance protein B [Escherichia coli UTI89]
 gi|218558282|ref|YP_002391195.1| efflux pump ( multidrug-efflux transport protein) [Escherichia coli
           S88]
 gi|237705320|ref|ZP_04535801.1| acriflavine resistance protein B [Escherichia sp. 3_2_53FAA]
 gi|91072161|gb|ABE07042.1| acriflavine resistance protein B [Escherichia coli UTI89]
 gi|218365051|emb|CAR02754.1| Putative efflux pump (Putative multidrug-efflux transport protein)
           [Escherichia coli S88]
 gi|226900077|gb|EEH86336.1| acriflavine resistance protein B [Escherichia sp. 3_2_53FAA]
 gi|294491511|gb|ADE90267.1| acriflavine resistance protein B [Escherichia coli IHE3034]
 gi|315289134|gb|EFU48532.1| putative ATP synthase F0, A subunit [Escherichia coli MS 110-3]
 gi|323949103|gb|EGB44995.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H252]
 gi|323953834|gb|EGB49635.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H263]
          Length = 1035

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q        R        +     + L+        +  +   ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 42.0 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|110641527|ref|YP_669257.1| multidrug efflux protein [Escherichia coli 536]
 gi|170683789|ref|YP_001743889.1| multidrug efflux transport protein EefB [Escherichia coli SMS-3-5]
 gi|191171011|ref|ZP_03032562.1| multidrug efflux transport protein EefB [Escherichia coli F11]
 gi|227886272|ref|ZP_04004077.1| multidrug efflux transport protein EefB [Escherichia coli 83972]
 gi|293409687|ref|ZP_06653263.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300971696|ref|ZP_07171569.1| putative ATP synthase F0, A subunit [Escherichia coli MS 45-1]
 gi|300971884|ref|ZP_07171684.1| putative ATP synthase F0, A subunit [Escherichia coli MS 200-1]
 gi|301046137|ref|ZP_07193312.1| putative ATP synthase F0, A subunit [Escherichia coli MS 185-1]
 gi|331682781|ref|ZP_08383400.1| multidrug efflux protein [Escherichia coli H299]
 gi|110343119|gb|ABG69356.1| multidrug efflux protein [Escherichia coli 536]
 gi|170521507|gb|ACB19685.1| multidrug efflux transport protein EefB [Escherichia coli SMS-3-5]
 gi|190908743|gb|EDV68331.1| multidrug efflux transport protein EefB [Escherichia coli F11]
 gi|222033098|emb|CAP75838.1| acriflavine resistance protein B [Escherichia coli LF82]
 gi|227836476|gb|EEJ46942.1| multidrug efflux transport protein EefB [Escherichia coli 83972]
 gi|291470155|gb|EFF12639.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300301870|gb|EFJ58255.1| putative ATP synthase F0, A subunit [Escherichia coli MS 185-1]
 gi|300309275|gb|EFJ63795.1| putative ATP synthase F0, A subunit [Escherichia coli MS 200-1]
 gi|300411182|gb|EFJ94720.1| putative ATP synthase F0, A subunit [Escherichia coli MS 45-1]
 gi|307553355|gb|ADN46130.1| multidrug efflux transport protein EefB [Escherichia coli ABU
           83972]
 gi|312945929|gb|ADR26756.1| multidrug efflux protein [Escherichia coli O83:H1 str. NRG 857C]
 gi|315295337|gb|EFU54667.1| putative ATP synthase F0, A subunit [Escherichia coli MS 153-1]
 gi|320195692|gb|EFW70317.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli WV_060327]
 gi|324006145|gb|EGB75364.1| putative ATP synthase F0, A subunit [Escherichia coli MS 57-2]
 gi|324011289|gb|EGB80508.1| putative ATP synthase F0, A subunit [Escherichia coli MS 60-1]
 gi|331080412|gb|EGI51591.1| multidrug efflux protein [Escherichia coli H299]
          Length = 1035

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q        R        +     + L+        +  +   ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 42.0 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|332187559|ref|ZP_08389296.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Sphingomonas sp. S17]
 gi|332012488|gb|EGI54556.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Sphingomonas sp. S17]
          Length = 1062

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 71/560 (12%), Positives = 152/560 (27%), Gaps = 41/560 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GLL      L    + +FP+  P               + +  + 
Sbjct: 8   RPIFAYVLAVLVVIAGLLS-----LRTLPIAQFPAIAPPA-------------VSITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGV----FSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+  +   +   +K           S       ITL+F      +    +V  
Sbjct: 50  PGADAQTLENTTTQIIEQQMKGIDHLRYFSSSSSSAGSVTITLTFEQGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  ++     +  ++      +     A + +  +  +  D +   
Sbjct: 110 KLQAATPLLPQEVQRQGIIVAKATQNFLLFVGLYSENGKHDADDLADIVASRISDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T A ++      N        G +      
Sbjct: 170 TGVGDTQIFGSQ-YAMRIWVDPIKLNNYALTMADVTNAVTAQNAQVSAGQIGAQPAPKEQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     ++                +                      +       
Sbjct: 229 MLNATVSVSSRLT-------------TPEQFAQIRLKSNTDGSIVRLGDVARVAIGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T+         L          I           
Sbjct: 276 AFSAQWNGKPASGIGIKLAPGANALDTVVAVKARVNELAKTFPSDVKVIFPYDTSPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + +  T A+L+  G ++   ++
Sbjct: 336 SIEQVIETLVEAVVLVFLVMFLFLQNFRATLIPTIAVPVVLTGTFAVLAAFGYSINTLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +         S   +           +           + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERLITTEHLSPKEAARKSMDEITGALIGIAAVLSAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+   I++       + +     F 
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVAVALILTPALCATILKPHDPNKAEGHGPLARFF 515

Query: 534 IPDCIAIQFMRARFWGVGIS 553
                     R R+     S
Sbjct: 516 RWFNDRFDRGRDRYEKGVRS 535



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 84/222 (37%), Gaps = 8/222 (3%)

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 + +   G    L          VA    +  + K     V +    +T      
Sbjct: 276 AFSAQWNGKPASGIGIKLAPGANALDTVVAVKARVNELAKTFPSDVKVIFPYDTSPFVRL 335

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
              ++I   +  V++  + M +++     +   L     + + +T T    A FG   N 
Sbjct: 336 SIEQVIETLVEAVVLVFLVMFLFLQ---NFRATLIPTIAVPVVLTGTFAVLAAFGYSINT 392

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +  ++  IG  V+D +VV + +     + T  +S ++   KS++E  G  +  +    
Sbjct: 393 LTLFGMVLAIGLLVDDAIVVVENV--ERLITTEHLSPKEAARKSMDEITGALIGIAAVLS 450

Query: 781 ISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
              LPMA +GGS       F+I +   +V++ + ++ +   +
Sbjct: 451 AVFLPMAFFGGSTGVIYRQFSITIVSAMVLSVAVALILTPAL 492



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 63/204 (30%), Gaps = 6/204 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V             +      G +    ++G+ +  +  Q  PG S           +  
Sbjct: 792 VRGATGTMAPFTAFSSFDWHQGPMQLTRYNGQPSMEILGQAAPGVSSGAAIKAMEEMQAK 851

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                +      + ++I  + +     +   W   +  +  + L
Sbjct: 852 LPPGTRLDWTGLSYEEQLSGGQAPALYGLSLLIVFLCLA---ALYESWSVPISVMLVVPL 908

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   L    L G+  ++     ++T IG S  + +++ +   + M+     +S  D   
Sbjct: 909 GVVGALLAAMLTGLNNDIYLQVGLITTIGVSAKNAILIVEFAEEKMRE---GLSAFDAAI 965

Query: 763 KSINETLGRSVYTSMAAFISVLPM 786
           ++    L   + TS+A    V P+
Sbjct: 966 EAAKLRLRPILMTSLAFVFGVFPL 989


>gi|157369369|ref|YP_001477358.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Serratia
           proteamaculans 568]
 gi|157321133|gb|ABV40230.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Serratia
           proteamaculans 568]
          Length = 1048

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 64/574 (11%), Positives = 161/574 (28%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIVMLAGVLSIM-----KLPIAQYPTIAPPA-------------VSISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQIIEQNMNGIDNLMYMSSTSDSSGSVTITLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  L         ++++    D       + +  +     D I  S
Sbjct: 110 KLSLATPLLPQEVQQQGLKVEKSSSSFLMVAGFISDDPSMTQDDIADYVASNIKDPISRS 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     TT  ++      NN       G        
Sbjct: 170 SGVGEVQLFGAQ-YAMRVWLDPNKLNNFQLTTTDVTSAITEQNNQIAAGQLGGMPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +       +I +     
Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGKILLKVNADGSQVRLSDVAHIERGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        ++         +           
Sbjct: 276 AVTARYNGKPAAGLGIKLATGANALNTAQGVKDALTKMQPFFPQGMKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +     +K +          
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-----LKPVAKGDHGVKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++              +   L  +
Sbjct: 511 FFGWFNRMFEKSTHHYTDSVANILRSTGRYLVIY 544



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 87/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       +   ++ +        L        +++   + ++    K+    
Sbjct: 258 SQVRLSDVAHIERGAESYAVTARYNGKPAAGLGIKLATGANALNTAQGVKDALTKMQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + + +++  + +   L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   
Sbjct: 436 EQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 76/249 (30%), Gaps = 10/249 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +   + + V  S   S         +   N       L +       
Sbjct: 777  PFRMLPEDINKWFVRGTSGQMVPFSAFSSAKWEYGSPRLERYNGLPSMEILGQATPGKST 836

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + E+  K  + I    T  + +              +  + I  +  L    + 
Sbjct: 837  GEAMNLMEELASKLPSGIGYDWTGMSYQERLSGNQAP----ALYAISI-LVVFLCLAALY 891

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  L L +   L    + G+  ++     +LT IG S  + +++ +  +  
Sbjct: 892  ESWSIPFSVMLVLPLGVIGALLAATMRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDL 951

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            M          +   +++   L   + TS+A  + VLP+ +    G     +    +  G
Sbjct: 952  MDKEGKG--LIEATLEAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGG 1009

Query: 805  IVVAASSSI 813
            ++ A   +I
Sbjct: 1010 MITATVLAI 1018


>gi|222056530|ref|YP_002538892.1| protein-export membrane protein SecF [Geobacter sp. FRC-32]
 gi|221565819|gb|ACM21791.1| protein-export membrane protein SecF [Geobacter sp. FRC-32]
          Length = 299

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 82/286 (28%), Positives = 139/286 (48%), Gaps = 5/286 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I   +  F    I  +  +  I  +     N GIDF GG  + +  + P  +  VRS+L 
Sbjct: 12  IGMRKISFAISAIIAIIGLIGIIQIARGAANMGIDFSGGTAMQLKFSAPFTMESVRSSLA 71

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
              I +   Q        L++++   G+     +       K         ++++  +GP
Sbjct: 72  KNGIENAELQEIKEGNKLLIKMRKSTGNVADSVQEA----LKKDFAANPFAVESSTEIGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I  +L +  +V V IS + +++YI  RF + F +GA+   + D+      F +   E N
Sbjct: 128 SIGDKLRKDTLVAVAISMLGIILYIAWRFDYKFGIGAVVATMHDVLAIFAIFFVLNKEVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  V A LT+ GYS+ D VVV+DR+R+NM           + ++SINE + R++ TS+  
Sbjct: 188 LLLVTAALTIAGYSLTDTVVVFDRIRENMHKNLKEH-MFTIFNQSINEVMSRTIITSLTT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F++ + + ++GG VI  FA  +  G+VVA  SSIF+A+PI+     
Sbjct: 247 FLAAISLLLFGGEVIHDFAFALVVGVVVATYSSIFVASPIVALWEK 292


>gi|296274549|ref|YP_003657180.1| hydrophobe/amphiphile efflux transporter [Arcobacter nitrofigilis
           DSM 7299]
 gi|296098723|gb|ADG94673.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 1042

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 66/575 (11%), Positives = 161/575 (28%), Gaps = 39/575 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL  +        ++++P  +P               +++    
Sbjct: 9   RPVFSAVVSILIFLAGLLSMI-----NLPIEQYPKVVPP-------------QIIVTTSY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   + +   +     +    I + F      ++    V  
Sbjct: 51  PGASAETISKTVAAPLEEKINGAKDMIYMNSLAADSGVVSINVYFEVGTNADDAKIDVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   +KL  + +K  +  T      + +          +    S   +    D +   
Sbjct: 111 RVQSALAKLPAEVQKQGVTVTERSPSLLQVISFYSPDNSKNTTYLSNYALMNIADNLKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     TT  +       N+      F    + +  
Sbjct: 171 KGVGDATIFGAKDYAIRVWVDPEKLSNFGLTTTDLINAIKEQNHQYAAGKFAAEPIANKQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +     +S                +    +                 +    +  
Sbjct: 231 MFTYTLRTPPRLS-------------TPTEFGNIVIRANKDGSALLLKDVATVELGASSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            ++  +   T +                    +   +      
Sbjct: 278 NLNSKLNGLPSIPIGIFLQSGANAIDTAKAVKETLLKASEKFPAGVSYRIPYSSTDFIQV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+ ++F+ +   +  L+   ++ ++++   A + LLG ++ L ++
Sbjct: 338 SIKEVAKTFVEAIILVVAIIFLFLQNWRATLIPVLAVPVSIVGAFAGMYLLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E +     +  +   +          A   I        I  
Sbjct: 398 FGLVLAIGIVVDDAIIVIENVERHLSEGMAPKEAAFKAMKEVSGALVAIILVLSAVFIPV 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   + FAIT+ +SI+IS F A+++  ++   +++   +K             
Sbjct: 458 AFISGLSGVMYKQFAITIVVSIVISGFVALTLTPSLCAVLLKDGHVKPQGFFKWFNNMFD 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
                  +M  +     I        +  +  +  
Sbjct: 518 KFTSGYSYMVKKTIRYSILSFLLFGGLIFITYNMY 552



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 79/212 (37%), Gaps = 10/212 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               + A    L    +K    V      ++        +E+ +  +  +I+    + ++
Sbjct: 301 AIDTAKAVKETLLKASEKFPAGVSYRIPYSSTDFIQVSIKEVAKTFVEAIILVVAIIFLF 360

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L  +  + + I        L G   NL  +  ++  IG  V+D ++V + 
Sbjct: 361 LQ---NWRATLIPVLAVPVSIVGAFAGMYLLGFSINLLTLFGLVLAIGIVVDDAIIVIEN 417

Query: 744 MRKNMKLYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           +    +  +  ++ ++   K++ E    L   +    A FI V  ++   G +   FAI 
Sbjct: 418 V---ERHLSEGMAPKEAAFKAMKEVSGALVAIILVLSAVFIPVAFISGLSGVMYKQFAIT 474

Query: 801 MAFGIVVAASSSIFIAAPI-LLFIYDWRAKNA 831
           +   IV++   ++ +   +  + + D   K  
Sbjct: 475 IVVSIVISGFVALTLTPSLCAVLLKDGHVKPQ 506



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 69/182 (37%), Gaps = 7/182 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
             +      + +  K  +  I   + + + +  ++ +W   +  +  +   +   +    +
Sbjct: 856  WVGTAYQEKRISSKSYLAFIFGILFLYLILAAQYERWMMPISVVMAIPFGVFGAVVATMM 915

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+E ++     +L LIG S  + +++ +     M+      S  D    +    +   +
Sbjct: 916  RGLENDIYFQVGILVLIGLSAKNAILIVEFA---MQQRKEGKSIYDAAINAAKLRIRPII 972

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS+A  + V+P+A+    G +   +    +  G++ A   +I       +F+     K 
Sbjct: 973  MTSLAFMLGVVPLAISTGAGAASRHAIGTGVIGGMLTATIIAIVFIPLFYIFVSKLSEKK 1032

Query: 831  AR 832
             +
Sbjct: 1033 HK 1034


>gi|313497204|gb|ADR58570.1| SecD [Pseudomonas putida BIRD-1]
          Length = 620

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 166/525 (31%), Positives = 271/525 (51%), Gaps = 41/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD D  +   +++Y  E+++ L+KE +
Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMAARMKVYEGEVKTLLRKERV 165

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q    I L FAD   +E     +             D +           + + 
Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFN--------DFELTTTERNELAVLRLA 217

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F       + K       F     G    VE  + I+G  +  A A+FD    
Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAAVERGLIITGDQVTDAQASFDEHG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
            P V+I  D  G       TR N+G+ +AV+   +      +                  
Sbjct: 335 SPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQTVGGVEKDVAVQSFVE 394

Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+I +Y  +G++A  ++  N++L LAL+SLLGATLTLP IAG
Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     SV  ++  GF+RAYS I D+N+T L+   +LF 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G G V+GFA+TM L I  SMFTA+ + RA++      + +K + 
Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKLW 619



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 89/250 (35%), Gaps = 5/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +     V +       + +    +    ++ L       G +         +  +
Sbjct: 372 VTRYVKQTVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   ++  F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-AFGVLATIALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      +S +  I
Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820
            +  N      V  ++   +    +   G   +  FA+ M+ GI  +  +++ +   ++ 
Sbjct: 548 HEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVN 607

Query: 821 LFIYDWRAKN 830
           L       K 
Sbjct: 608 LTCGGRDIKK 617



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/121 (10%), Positives = 36/121 (29%), Gaps = 17/121 (14%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W   L  ++  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117
            D      +        + L ++G G+  +   ++++     +  A         +    
Sbjct: 51  LDRVSKALVDAKIAVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQT 110

Query: 118 F 118
            
Sbjct: 111 T 111


>gi|14331104|emb|CAC41009.1| AcrB protein [Klebsiella pneumoniae]
          Length = 1048

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 68/689 (9%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLSIL-----KLPVAQYPTIAPPA-------------ISISAMY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117
                  +Q      +   +      ++      +     ITL+F      +    +V  
Sbjct: 50  PGADPQTVQNTVTQVIEQNMNGIDHLMYMSSNGDSTGTVNITLTFESGTDPDIAHVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +         +++          +  + S  +     D I  +
Sbjct: 110 KLALATPLLPQEVQQQGISVEKASSSFLMVVGVINTNGTMNQDDISDYVAANMKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVISALKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTNTE-------------EFGNILLKVNQDGSQVRLRDVAKIELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFFPSGMKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +++  +  S         + 
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIQKGSHGATTGFFGWF 515

Query: 534 IPDCIAIQFM----------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                                   + V   I+    +   +         + +G      
Sbjct: 516 NRMFDKSTHHYTDSVGNILRSTGRYLVLYLIIVVGMAWLFVRLPSSFLPDEDQGVFLSMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +    ++ +  + E  F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLDEMTNYYLTKEKDNVESVFAVNGFGFAGRGQNTGIAFVSLKDWSQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + ++           ++    +  
Sbjct: 636 RPGEENKVEAITARAMGYFSQIKDAMVFA 664



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +     K+    
Sbjct: 258 SQVRLRDVAKIELGGESYDVVAKFNGQPASGLGIKLATGANALDTANAIRAELAKMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PSGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMALMEELAGKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 958  G--LIEATLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATI 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|253687417|ref|YP_003016607.1| protein-export membrane protein SecF [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251753995|gb|ACT12071.1| protein-export membrane protein SecF [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 324

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 93/301 (30%), Positives = 169/301 (56%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR       IS L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 7   YNIEQLNHGRKVYDFMRWDTLAFVISGLLIIASIAIMGVRGFNWGLDFTGGTVIEINLEK 66

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P+DL V+RS+LE+    +   QNF   ++ +VR+    G S  +    +++K        
Sbjct: 67  PIDLDVLRSSLETSGFSEPQVQNFGSSRDVMVRMPPVSG-SENEALGNKVLKVVNDTFQQ 125

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+LIYI  RF+W  ALG++  L  D+  T
Sbjct: 126 HATVKRIEFVGPSVGSDLAQAGALALLSALIAILIYIGFRFEWRLALGSVLALGHDVIIT 185

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+NDK+VV DR+R+N +       + ++ + S+ +
Sbjct: 186 MGLLSLFSIEIDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKVRRGTPY-EITNISLTQ 244

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS      ++ + V+GG+++  F++ M  G+++   SSI++++ + L +   R
Sbjct: 245 TLHRTIITSATTLAMIVILMVFGGALLHGFSLTMFIGVIIGTISSIYVSSALALKLGMKR 304

Query: 828 A 828
            
Sbjct: 305 E 305


>gi|117919468|ref|YP_868660.1| preprotein translocase subunit SecD [Shewanella sp. ANA-3]
 gi|117611800|gb|ABK47254.1| protein-export membrane protein SecD [Shewanella sp. ANA-3]
          Length = 624

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 166/533 (31%), Positives = 279/533 (52%), Gaps = 37/533 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  +++ P  L  +++   PS +       I LGLDLRGG   +L+VD          
Sbjct: 105 TLVSSMVSEPKELTLALVSAAPSWLQNMGFEPIKLGLDLRGGVQFLLDVDVQPVYQAQAD 164

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQNK------ITLSFADSRFK-ENIADKVTLFLQGVNS 124
              + LR FL+++ I   S+R    +      I ++F D+     N    +  F+Q    
Sbjct: 165 ALVESLRLFLREQQIRGASVRIDSTRDDAGLQIEIAFNDAAQSTNNARSTIRQFMQQ--- 221

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                      +T  +  + + L+Q    ++ +  ++Q+++I+R RI+++GI+E+ +QR 
Sbjct: 222 -----SYPTWQLTNADNGLVVKLAQEEQIKLRNLTVQQNLQIMRSRIEELGITEALVQRQ 276

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
           G HRI I+LPG QDP+  + ++G TA ++F +V             + L+D  GN   V 
Sbjct: 277 GEHRIRIELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAQVLKDKSGNPVYVA 331

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
               + G H+  A AN         V+I  D +G ++  E +R NIGKP+A         
Sbjct: 332 RTPVLGGDHIVDARANIGEMGM-AEVNIHLDRIGGQKMSEFSRANIGKPMATSYSEYSRD 390

Query: 305 AP------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                            Q+    + +I+G  T + A  LA +LRAGS+   + IVEER +
Sbjct: 391 EQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTI 450

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-AT 411
           G  LG+++I  G  A+  G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A 
Sbjct: 451 GPTLGAENIQNGFAALGLGMGITLLFMALWYRRLGWVANVALIANMVILFGLLALIPGAV 510

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAG+VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STIFD+N T +
Sbjct: 511 LTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTM 570

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           I  VVL+  G G ++GFA+T+GL +L SMFT I   RA++  +      + + 
Sbjct: 571 ITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDARRHVR 623



 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 93/260 (35%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    + +          +    ++ L       G    Q
Sbjct: 365 GQKMSEFSRANIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 424

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I+ G   + +     L+++ + ++  
Sbjct: 425 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIQNGFAALGLGMGITLLFMALWYR-R 483

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 484 LGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 543

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID   +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 544 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 600

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  ++  +Y   A+ 
Sbjct: 601 TGIFASRALINLVYGRDARR 620


>gi|157371935|ref|YP_001479924.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Serratia
           proteamaculans 568]
 gi|157323699|gb|ABV42796.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Serratia
           proteamaculans 568]
          Length = 1033

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 71/680 (10%), Positives = 181/680 (26%), Gaps = 40/680 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  +     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIVMMAGALSIM-----KLPIAQYPTIAPPAV---------SISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        +        +TL+FA     +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGLDGLMYMSSNSDAAGNATVTLTFATGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    +   +         ++++    D       + +   +    D I  +    
Sbjct: 114 AMPLLPQTVQDQGINVQKASSSFLMVAAFTSDSSAMTQADLADYAVANIKDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP++L     T+  +       NN   G   G            
Sbjct: 174 QVQLFGAQ-YAMRIWLDPNKLDNYQLTSEDVVRAIKAQNNQIAGGQLGALPAVPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +S                +    +        +        I           
Sbjct: 233 SIIAQTRLS-------------SPQQFGNILLRVNQDGSQVHLRDVARIALGSENYTTSA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T          L          +           S   
Sbjct: 280 EYNGKPAAGLGVKLATGANALDTANAVKAEIGRLEPYFPAGMHVVYPYDTTPFVKISIGE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLIEAIILVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAILAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +     ++    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMAQIQGALVGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530
           GG      R F++T+  ++++S+  A+ +  A+ + +        +       +      
Sbjct: 460 GGSTGAIYRQFSVTIVSAMVLSVLVAMILTPALCVTLLKPGVHAPKTGFFAWFNRLFERS 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  I           +   ++    ++  +         + +G     +       
Sbjct: 520 TQHYQGSIGNILNHTGRMLLIYLLIVIGMALLFIRLPTAFLPDEDQGVFMNMIQLPAGAT 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                + L  +    ++ +  +    F V      G+          +K         + 
Sbjct: 580 QQRTEAVLGQVTHYYLNKEKANVNSVFTVAGFGFNGNGQNNGLAFVSLKDWSQRPGEKNK 639

Query: 651 IQNTEIVGPKISRELIRKGI 670
           ++             I++GI
Sbjct: 640 VEAIIKRANMAFAHTIKQGI 659



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +    S +        L        +++     ++    ++    
Sbjct: 258 SQVHLRDVARIALGSENYTTSAEYNGKPAAGLGVKLATGANALDTANAVKAEIGRLEPYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + + +++  +     L     + + + 
Sbjct: 318 PAGMHVVYPYDTTPFVKISIGEVVKTLIEAIILVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  +M      +PMA +GGS       F++ +   +V++   ++ +   + + 
Sbjct: 436 AQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSVTIVSAMVLSVLVAMILTPALCVT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            + +         L      +  G      L       +  IS + + + +   ++ W   
Sbjct: 836  QAMMLMEKLAAKLPKGIGYDWTGMSYQERLSGNQAPALYAISLVVVFLCLAALYESWSIP 895

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L    L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 896  FAVMLVVPLGVVGALLGATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 955

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                     ++    L   + TS+A  + VLP+ +    G     +    + FG++ A  
Sbjct: 956  --PLIAATLEATRMRLRPILMTSLAFILGVLPLVLSSGAGSGAQNAVGTGVMFGMISATL 1013

Query: 811  SSI 813
             +I
Sbjct: 1014 LAI 1016


>gi|323187527|gb|EFZ72836.1| acrB protein [Escherichia coli RN587/1]
          Length = 1035

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q        R        +     + L+        +  +   ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 41.2 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 72/245 (29%), Gaps = 9/245 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIY 824
             + + 
Sbjct: 1020 FVLVK 1024


>gi|332981506|ref|YP_004462947.1| protein translocase subunit secF [Mahella australiensis 50-1 BON]
 gi|332699184|gb|AEE96125.1| protein translocase subunit secF [Mahella australiensis 50-1 BON]
          Length = 297

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 96/288 (33%), Positives = 152/288 (52%), Gaps = 3/288 (1%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R+    ISI   +  I  +   GLN+GIDF+GG  + +   +  D+  +R+ +++  I 
Sbjct: 6   RRWIWYSISIAIIVVGIAFMLIRGLNFGIDFRGGTLMEINIGKSYDVEDIRAIIKAHNID 65

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
               +  D  +  L+R+   P D   Q ++L  +K+K         + + E VGP +  E
Sbjct: 66  AYVSEAGDNNQEVLIRIASVPNDDEVQAQILNDMKEKYGIDDS--AVLSLEKVGPTVGGE 123

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L R  I  + I+ + MLIYIWIRF+  F + AI  L+ D    L   A+   + N   VA
Sbjct: 124 LTRNAIYAIAIACVLMLIYIWIRFEIRFGVAAIIALVHDALIMLAVVAITNTQINTPFVA 183

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AVLT++GYS+ND +VV+DR+R+N +      ++  +L D SI +TL RS+ T++    ++
Sbjct: 184 AVLTIVGYSINDTIVVFDRIRENRRKLGKKKMNPFELADMSIEQTLARSINTTLTTLFTI 243

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             + ++G   I  FA+P+  GIV  A SSIFIA+PI        A   
Sbjct: 244 TALYIFGVPSIKEFALPIIVGIVSGAYSSIFIASPIWATWTQRDAMEK 291


>gi|212637600|ref|YP_002314125.1| AcrB/AcrD/AcrF family protein [Shewanella piezotolerans WP3]
 gi|212559084|gb|ACJ31538.1| AcrB/AcrD/AcrF family protein [Shewanella piezotolerans WP3]
          Length = 1049

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 72/687 (10%), Positives = 185/687 (26%), Gaps = 39/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  L        + ++P+  P + +            V     
Sbjct: 8   RPIFAWVIAIIVMLAGVLSIL-----GLPVSQYPNIAPPSVV---------ISAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + L        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTMEDSVTQVIEQRMTGLDHLRYISSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + +   +         +++     +       + S  +     D +       
Sbjct: 114 AMPLLPQEVQAQGVNVAKSSAGFLMVVGFVSEDGSLDKNDISDYVGSNIQDPLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L Q   T+  +       N        G            
Sbjct: 174 TIELFGAQ-YAMRIWLDPLKLTQYNLTSMDIISSIREQNAQVSAGQLGGSPSVAGQELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +    + F      +           
Sbjct: 233 TVSAQSRL-------------QTADQFKKIIIKADPSGAKVFLEDVARVELGAESYAVES 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T E        ++         +           S   
Sbjct: 280 FYNGKPAAGIGIQLATGANALATAEGVRAKIEEMQPFFPEGMEIVYPYDTTPFVEKSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T A+LS  G ++   ++  +V
Sbjct: 340 VVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILSAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPIEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLSRFF 532
            G      R F+IT+  ++ +S+  AI +  A+   +++         K+      +R F
Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVMVAIILTPALCATMLKPIAKGEGHKKTGFFGWFNRKF 519

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DL 591
                     + A     G +++  +     +    +     F      G+L  + +  +
Sbjct: 520 DALTSRYEDSVAAMIKRAGRTMMVYLAITVAVGWIFMRMPTAFLPDEDQGILFTQAILPV 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +  +   +++      F       N                + + +    + +       
Sbjct: 580 NSTQEATQNVLEDVTDFYLNAEGDNVKSVFSVSGFSFAGNGQNMGIAFVGLKDWSERQNP 639

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI 678
                     +  +  +     + + +
Sbjct: 640 GQDVQSVAGRAMGMFMQMKEAFVFAFV 666



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 81/240 (33%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       +   +           +        +++A    +    +++ 
Sbjct: 255 PSGAKVFLEDVARVELGAESYAVESFYNGKPAAGIGIQLATGANALATAEGVRAKIEEMQ 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  ++ + + + + +++  + +   L     + +
Sbjct: 315 PFFPEGMEIVYPYDTTPFVEKSIEGVVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    +  G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAILSAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPIEATK 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F+I +   + ++   +I +   +
Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVMVAIILTPAL 492



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 75/246 (30%), Gaps = 13/246 (5%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 +      +       V  S   +         +   N     N    +       
Sbjct: 777  YRMQPEDMDSWYVRNSQGEMVPFSAFATGSWEYGSPRLERFNGLPAMNIQGGVAPGFSTG 836

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + +MVKK            + E         ++        +S + + + +   +
Sbjct: 837  EAMNIIEDMVKKLPPGFGVEWNGLSYEERLSGNQAPMLY------ALSIVVVFLVLAALY 890

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      I  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 891  ESWSVPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 951  ---YEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGG 1007

Query: 805  IVVAAS 810
            ++ +  
Sbjct: 1008 MMSSTF 1013


>gi|186475247|ref|YP_001856717.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           phymatum STM815]
 gi|184191706|gb|ACC69671.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phymatum STM815]
          Length = 1064

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 67/574 (11%), Positives = 153/574 (26%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL            + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIILMLAGLASIF-----TLPVAQYPTIAPPA-------------VQISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   +     +   S     +    ITL+FA     +    +V  
Sbjct: 50  PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++     T      +++             + +  +     D +   
Sbjct: 110 KLQLATPLLPQVVQQLGTKVTKSSSSFLLVMAFVSTDGSMTKYDLANYVASNVQDPVSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    D  +L     T   +       N    G   G        
Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDAHKLTNFGLTPVDVETALQAQNVQVAGGSLGGTPSIPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   ++                +    +        +        I       
Sbjct: 229 LLQATISEATLLT-------------TPEQFGNVLLKVNQDGSQVRIKDVARIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATAKAVRDKIDQLSKYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++S +G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMSAVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMSEEGLSPKDATRKAMDQITGALIGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F R+R             S   L  +
Sbjct: 511 FFGWFNKTFDRSRDKYHSGVHHVIKRSGRWLIIY 544



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +  +   +                 +++A  + +     ++++  
Sbjct: 258 SQVRIKDVARIELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRDKIDQLSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     L     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N+ ++  ++  IG  V+D +VV + +     +    +S +D   K++
Sbjct: 378 GTFAIMSAVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKDATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  +  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 DQITGALIGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 76/221 (34%), Gaps = 8/221 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q                            +   +    
Sbjct: 816  ERYNGISAVEIQGQAAPGKSTGQAMTAMEAIAAKLPAGIGYEWTGLSFQERQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YGISILVVFLCLA---ALYESWSIPFSVIMVVPLGVLGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+        +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQGEGMGPVEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                G +   +    +  G++ A   +IF+     + I   
Sbjct: 991  SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 68/541 (12%), Positives = 138/541 (25%), Gaps = 28/541 (5%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         L     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              D  +  L      + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LKDISDWLLNDEKSIVESTFTVNGFSFAGRGQNSGLVFVRMKDYAERQHANQKVQALVGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                     K  ++       I  + + +  D  +        E +    +Q+    +  
Sbjct: 650  -MYMHFAGYKNAVVFPVNPPSIPELGTASGFDFELQDRAGLGHEKLMAARNQLLGMAAKD 708

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
              L   R        Q    +         +S   +    S       V    D+D    
Sbjct: 709  PTLAQVRPNGLNDTPQFKVSIDHEKAAAQGVSLSTIDQTFSIAWASAYVNNFLDTDSRI- 767

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                KV +        T       +      S     A    + T  +        +   
Sbjct: 768  ---KKVYLQADAPFRMTPENLSDWYVRNTAGSMVPFSAFASGQWTYGSPKLERYNGISAV 824

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +                    T   A         G     L+  E ++          
Sbjct: 825  EIQGQAAPGKSTGQA------MTAMEAIAAKLPAGIGYEWTGLSFQERQSGSQA------ 872

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  I   +V + L  +             + L V+  L   +L G    +    G++
Sbjct: 873  -PILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVLGALLAATLRGLENDVFFQVGLL 931

Query: 422  LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +GL+  + IL+ E  RE +  +      +           I  +++  ++  + L   
Sbjct: 932  TTVGLSAKNAILIVEFARELQQGEGMGPVEAALEAARLRLRPILMTSLAFILGVLPLAIS 991

Query: 481  ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G  +       +   +L + F AI ++    + I      +  D +   + +     
Sbjct: 992  NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAKFTGEKEDPDEAMKHYNEHHP 1051

Query: 538  I 538
             
Sbjct: 1052 H 1052


>gi|158316897|ref|YP_001509405.1| preprotein translocase subunit SecF [Frankia sp. EAN1pec]
 gi|158112302|gb|ABW14499.1| protein-export membrane protein SecF [Frankia sp. EAN1pec]
          Length = 417

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 78/309 (25%), Positives = 130/309 (42%), Gaps = 9/309 (2%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L     ++ F+  R     +S +        +   G + GI+F GG      +N    +
Sbjct: 6   RLYRSEFSVDFVGRRRVWYIVSGVLITICALSMIFRGFSLGIEFSGGAVFQFPSNGGT-V 64

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             V S L    I          E +   R+Q           + +    +     P    
Sbjct: 65  EQVDSLLSKNGIDASDSVVQQLETSRQFRVQTPTLTDQQTEALQKDFATRFKVTNPD-EN 123

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                VG      +  K I G+I+  + ++IY+ IRF+W  A  A+  LI D+  T+G +
Sbjct: 124 IAVSTVGSSWGSTITSKAIQGLIVFLVLVMIYLSIRFEWKMAAAAMAALIHDLIVTMGVY 183

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           +L G E   + V AVLT++G+S+ D VVV+DR+R+N     T    ++ +  + ++NETL
Sbjct: 184 SLVGFEVTPSTVIAVLTILGFSLYDTVVVFDRVRENTAGMATSSRRTYAEATNDALNETL 243

Query: 770 GRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ TS+ A I V  +        G   +   A+    GI     SS+F A P+L+ + 
Sbjct: 244 VRSLNTSLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPLLVDLK 303

Query: 825 DWRAKNARI 833
                   +
Sbjct: 304 RGEPAVKAL 312


>gi|91977246|ref|YP_569905.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris
           BisB5]
 gi|91683702|gb|ABE40004.1| protein translocase subunit secF [Rhodopseudomonas palustris BisB5]
          Length = 369

 Score =  197 bits (500), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 113/336 (33%), Positives = 191/336 (56%), Gaps = 17/336 (5%)

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
                 ++     + +   ++  +     ++ +            D     F + R    
Sbjct: 1   MTSTQWILIGLGVLIVALTIVSIMDWLPSLRIVP-----------DDTHFDFTQFRRISF 49

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRSNLESLQIGDISFQ 609
            IS + SI +I L FTHGLN+GIDFKGG  L V A+    D+  +R  L  L +GD+  Q
Sbjct: 50  PISAVLSIAAITLFFTHGLNFGIDFKGGTLLEVRAHSGTADIPGMRETLGKLGLGDVQLQ 109

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
            F G    L+R+  QPG   AQ   ++ V+  +         +  E+VGP++S EL+  G
Sbjct: 110 QFGGPAEVLIRVAEQPGGDAAQQEAVQKVRGAL---GNSVDYRRVEVVGPRVSSELLAYG 166

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           ++G++++ + +L+Y+W RF+W FALGA+   + DI  T+GF ++  ++F+LT++AA+LT+
Sbjct: 167 MLGLMLAILGILVYLWFRFEWQFALGAMIANVHDIVLTIGFMSISQVDFDLTSIAALLTI 226

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +GYS+ND VV+YDR+R+ ++ Y   +    L+++SIN TL RS+ T +   +++  + ++
Sbjct: 227 LGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLSRSIITHVTVTLALFALLLF 285

Query: 790 GGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824
           GG  I SF   M FG ++V   +SIFIAAPIL+++ 
Sbjct: 286 GGHAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 321


>gi|238752050|ref|ZP_04613534.1| Acriflavine resistance protein B [Yersinia rohdei ATCC 43380]
 gi|238709750|gb|EEQ01984.1| Acriflavine resistance protein B [Yersinia rohdei ATCC 43380]
          Length = 1041

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/551 (12%), Positives = 154/551 (27%), Gaps = 46/551 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + ++++             + +  +     D +   
Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT  +       N+       G     D+ 
Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDVVTAIQSQNSQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      +       
Sbjct: 229 ALNATINAQSQL-------------QTPEQFRDITLRVNQDGSLVTLGEVAKVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E      A L           +          
Sbjct: 276 DYLSRFNGQAASGMSIKLASGANELQTDELVKARIAELTPFFPHGLEAKIAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++
Sbjct: 336 SIKDVVKTLLEAILLVFFVMYLFLQNFRATLIPTIAVPVVLLGTFAILSIFGFSINTLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+         +K I          
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIKAGHHQAKGG 510

Query: 534 IPDCIAIQFMR 544
                   F R
Sbjct: 511 FFGWFNRTFDR 521



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 87/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +    +++    ++T   P 
Sbjct: 260 VTLGEVAKVEMGAEKYDYLSRFNGQAASGMSIKLASGANELQTDELVKARIAELTPFFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + +   +++  + +   L     + + +  T
Sbjct: 320 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFFVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               ++FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ +
Sbjct: 380 FAILSIFGFSINTLTLFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 438 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029


>gi|148546109|ref|YP_001266211.1| preprotein translocase subunit SecD [Pseudomonas putida F1]
 gi|148510167|gb|ABQ77027.1| protein-export membrane protein SecD [Pseudomonas putida F1]
          Length = 620

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 166/525 (31%), Positives = 273/525 (52%), Gaps = 41/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD D  +   +++Y  E+++ L+KE +
Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERV 165

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q    I L FAD   +E     +             D             + + 
Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFN--------DFDLTTTDRNELAVLRLA 217

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F       + K       F     G    VE  + I+G  +  A A+FD    
Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAAVERGLIITGDQVTDAQASFDEHG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+I  D  G       TR N+G+ +AV+   +      +                  
Sbjct: 335 RPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQTVGGVEKDVAVQSFVE 394

Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+I +Y  +G++A  ++  N++L LAL+SLLGATLTLP IAG
Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRGFGVIATIALAGNMVLLLALMSLLGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE +   SV  ++  GF+RAY+ I D+N+T+L+   +LF 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREELKAGMSVQRAIHEGFNRAYTAIIDANLTSLLVGGILFA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G G V+GFA+TM L I  SMFTA+ + RAM+      + +K + 
Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVNLTCGGRDIKKLW 619



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 91/250 (36%), Gaps = 5/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +     V +       + +    +    ++ L       G +         +  +
Sbjct: 372 VTRYVKQTVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   ++  F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-GFGVIATIALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +K     +S +  I
Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREELKA---GMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820
            +  N      +  ++ + +    +   G   +  FA+ M+ GI  +  +++ +   ++ 
Sbjct: 548 HEGFNRAYTAIIDANLTSLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRAMVN 607

Query: 821 LFIYDWRAKN 830
           L       K 
Sbjct: 608 LTCGGRDIKK 617



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/385 (9%), Positives = 94/385 (24%), Gaps = 28/385 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W   L  ++  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117
            D      +        + L ++G G+  +   ++++     +  A         +    
Sbjct: 51  LDRVSKALVDAKIAVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQT 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                        +                    ++  +  A+   M++    +  +   
Sbjct: 111 T--------PQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRK 162

Query: 178 ESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
           E    R        I++    +    + R L+              N        +   +
Sbjct: 163 ERVRYRSLPQQDGGIMLGFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAK 222

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            ++  +Y ++  +      +N           +    I  +  G +   E  R       
Sbjct: 223 VAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 282

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                G    A      +   +             I    +         +   + N+  
Sbjct: 283 LEFRFGAEPGASKATTEVFEFREGGRSAAVERGLIITGDQVTDAQASFDEHGRPQVNIRL 342

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFM 379
           D     +         G  + V+F+
Sbjct: 343 DGHGGELMSRATRSNVGRSMAVIFI 367


>gi|187250972|ref|YP_001875454.1| protein-export membrane protein SecF [Elusimicrobium minutum
           Pei191]
 gi|186971132|gb|ACC98117.1| Protein-export membrane protein SecF [Elusimicrobium minutum
           Pei191]
          Length = 321

 Score =  197 bits (500), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 158/303 (52%), Gaps = 8/303 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              +       F++ R +   +S +  I  +  + T GLN GIDFKGG  + V     + 
Sbjct: 1   MMNLIPKTNFDFLKIRKYFYAVSAIILIAGLICILTRGLNMGIDFKGGTMVQVQFTESIT 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VRS +E     +   Q++ G+  ++++++   G       V   V+  +T      T
Sbjct: 61  IDQVRSAVEK---YNPEIQSYVGKNTYMIKIK---GSQENVNEVRSDVETSLTAAKLKFT 114

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
           +  T+ VGP + ++L  + +  + +S + M++YI  RF+   +    +  LI D    + 
Sbjct: 115 VVATDFVGPTVGKDLGERALWALALSLVFMVLYIAFRFQNIIWGTAGVIALIHDAFFMVA 174

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            FA    EF+L  VAA+LT +GYS+ND +V++DRMR+N+K      SF +++++S+NETL
Sbjct: 175 AFAFLQKEFDLVIVAALLTAVGYSINDNIVIFDRMRENIKENPK-ESFYNIVNRSLNETL 233

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R+V T     I ++ +  +GG V+ +F++ M  G++V   S++FIA PI+         
Sbjct: 234 SRTVITGSTVLIVLVIIYFFGGEVLKNFSLIMLIGVIVGTYSTLFIATPIVYDWAKDSDN 293

Query: 830 NAR 832
            A+
Sbjct: 294 FAK 296


>gi|323173475|gb|EFZ59104.1| inner membrane protein [Escherichia coli LT-68]
          Length = 1034

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 69/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +        L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLVELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPYSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLVELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|301017624|ref|ZP_07182298.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           69-1]
 gi|300400118|gb|EFJ83656.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           69-1]
          Length = 1035

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q        R        +     + L+        +  +   ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 41.6 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTLFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|329905134|ref|ZP_08274053.1| Protein-export membrane protein SecD [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327547694|gb|EGF32479.1| Protein-export membrane protein SecD [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 624

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 154/500 (30%), Positives = 264/500 (52%), Gaps = 20/500 (4%)

Query: 34  RFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90
             P  +       + LGLDLRGG H +L+VD    +   LQ     +RS L+ + I    
Sbjct: 117 NTPHWLQSLHAFPMYLGLDLRGGVHFLLQVDTRAILAKRLQGLQSGVRSTLRDKNIRHTG 176

Query: 91  MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
           + +  N I +++ D   ++   + +   +  +     +D            ++ I L + 
Sbjct: 177 ISRNGNAIEVAYRDVATRDQSKEILASQMPDILLTDGLDVANP--------KLIITLKEA 228

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
            +      A+ Q++  + +R++++G++E  IQR G+ RI++QLPG QD SR + ++G  A
Sbjct: 229 ALKTAQDDAVNQNIATLGRRVNELGVAEPIIQRQGADRIVVQLPGVQDVSRAKDIIGRQA 288

Query: 211 KMSFHKVLPN-----NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
            +    V               F     +   G   ++  +  I+G +++ A+A+FD   
Sbjct: 289 TLEVRMVDETVTRGTEETAAVPFNSELFKVGKGVPVVLYKEPIITGDYISSASASFDQNQ 348

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQAIPSGKAQISGN 322
            +P V I  +  G R+  + TR  +GK +A+VL  +    +      +     + QI+G 
Sbjct: 349 -QPAVGIDLNGDGGRKMRDATRGQVGKSMAIVLFEKGKGEVLTVATIRDELGSRFQITGM 407

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            + E AG L+ +LRAGSL   ++ VEER +G  LG+++I KG  +   G   I +FM++ 
Sbjct: 408 GSPEAAGDLSLLLRAGSLAAPMDFVEERTIGPQLGAENIAKGFNSTKYGFAAIAVFMVIY 467

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y  +G+ +  ++ +N++L +ALLS L ATLTLP IA I L +G+A+D+N+L+NERIREE 
Sbjct: 468 YMLFGVFSVVALSVNLLLLVALLSTLQATLTLPGIAAIALTLGMAIDANVLINERIREEL 527

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R   S   ++ +GF RA++TI DSN+T +IA + L  FG G +RGFA+   L IL S+F+
Sbjct: 528 RNGNSPQAAISIGFDRAWATIIDSNVTTMIAGLALLIFGSGPIRGFAVVHCLGILTSIFS 587

Query: 503 AISIVRAMMIFIIRYKKMKS 522
           ++ + R +       +K  +
Sbjct: 588 SVFVSRGLANLWYGRQKKLT 607



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 32/181 (17%), Positives = 79/181 (43%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                   +GP++  E I KG         A+ +++ I +   F + ++  L +++   +
Sbjct: 429 MDFVEERTIGPQLGAENIAKGFNSTKYGFAAIAVFMVIYY-MLFGVFSVVALSVNLLLLV 487

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              +       L  +AA+   +G +++  V++ +R+R+ ++      S +  I    +  
Sbjct: 488 ALLSTLQATLTLPGIAAIALTLGMAIDANVLINERIREELR---NGNSPQAAISIGFDRA 544

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +++   I+ L + ++G   I  FA+    GI+ +  SS+F++  +    Y  + 
Sbjct: 545 WATIIDSNVTTMIAGLALLIFGSGPIRGFAVVHCLGILTSIFSSVFVSRGLANLWYGRQK 604

Query: 829 K 829
           K
Sbjct: 605 K 605



 Score = 42.4 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 36/121 (29%), Gaps = 23/121 (19%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++  +    G++  +PNF  +S   +  S              G + + LE  
Sbjct: 3   RYPLWKYLIIVLALIFGVIYTVPNFFGESPAVQISS--------------GKATVKLEA- 47

Query: 62  EDDFVNGFLQMYSDELRS-FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                 G L    D L    L   G+    +   Q  +   F D   +      +   L 
Sbjct: 48  ------GVLARVQDILEKGGLPSTGLYY-EVNGSQGSVRARFTDPDTQFKAKALLEKELN 100

Query: 121 G 121
            
Sbjct: 101 T 101


>gi|295688852|ref|YP_003592545.1| protein-export membrane protein SecF [Caulobacter segnis ATCC
           21756]
 gi|295430755|gb|ADG09927.1| protein-export membrane protein SecF [Caulobacter segnis ATCC
           21756]
          Length = 316

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 165/302 (54%), Gaps = 2/302 (0%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   IP     +F+R        S +  + S+  LF  GLN GIDFKGG  L +  
Sbjct: 1   MRWPLIRYIPRATKFRFVRWAPVAAVFSAILIVGSVASLFVQGLNLGIDFKGGNALEIAM 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +RPV L+ +RS +  + + D   Q F  + N  +  ++ P +  A +     V++++ + 
Sbjct: 61  SRPVPLADLRSAMNQIGVHDAQVQGFASQPNSAMV-KFLPAEGQAPSAASANVERELVKR 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
            P   + +   VG K+S EL+  G   + ++ +  L YIW RF   +  GA+  +I DI 
Sbjct: 120 FPDLKVTSRSEVGAKVSGELLMSGFKALGVALLLTLGYIWFRFGLSYGTGAVVAVIHDIV 179

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            TLG  ++ GIEF++T +AA+LT+IGYS+N+KV+ +DR+++N++ Y  +   RD+ID S 
Sbjct: 180 LTLGLLSVVGIEFSMTEIAALLTVIGYSMNEKVITFDRLKENLRKY-KTTPLRDIIDLSE 238

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           NE L R++ T   A +++    V+GG V+      M FGI++   SSI+IA P++L    
Sbjct: 239 NERLSRTIITGTTALLALGGTMVFGGPVLFPLVFTMVFGIIIGTYSSIYIALPLILVWGV 298

Query: 826 WR 827
            R
Sbjct: 299 KR 300


>gi|313681646|ref|YP_004059384.1| protein translocase subunit secf [Sulfuricurvum kujiense DSM 16994]
 gi|313154506|gb|ADR33184.1| protein translocase subunit secF [Sulfuricurvum kujiense DSM 16994]
          Length = 323

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 83/294 (28%), Positives = 159/294 (54%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L  +     F+         S +    +I L+ T G ++GIDF GG  + V    P  
Sbjct: 1   MELFKEDKVYNFLGKGKIFFVASFVLFFLAIALIATKGFSFGIDFTGGTVVQVKYQGPAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR  LE  ++   +  +  G    +V       D    ++ +  V ++I +      
Sbjct: 61  IDKVREALEKDELFKHAAVSEFGSPEEIVIKTAASTDG--LSKDIGDVTREILKGTGEFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  ++VGPK+  EL  KG+   +++  A++  +  R++W FAL AI  ++ DI  T GF
Sbjct: 119 IRRVDMVGPKVGDELRVKGLTAFLLTLGAIMAMVTFRYEWRFALAAIIAIVHDIVITFGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            + F I+FN+ +VAA+L ++GYS++D ++VYDR+R++++  + +  F  +++++++ T  
Sbjct: 179 VSYFEIDFNIESVAALLMILGYSIHDTIIVYDRIREHIQE-SKNSDFVMIVNEAVSRTQS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R+  TS+  F  VL + ++GG ++  F+ PM  G+++   SSIF+AA ++++  
Sbjct: 238 RTTLTSLTVFFVVLTLFLFGGDIMLGFSFPMLVGVIIGTYSSIFVAAQLVVWTG 291


>gi|308049473|ref|YP_003913039.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ferrimonas balearica DSM 9799]
 gi|307631663|gb|ADN75965.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ferrimonas balearica DSM 9799]
          Length = 1047

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 72/567 (12%), Positives = 159/567 (28%), Gaps = 37/567 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              +  +L  +    G+L  +     Q  + ++P+  P               +      
Sbjct: 8   RPVFAWVLAILAMLAGILSLV-----QLPVAQYPNIAPPA-----------IQVTAFYPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119
                    +    ++  + L               + ITL+F      +    +V   +
Sbjct: 52  ASAKTAEETVTQVIEQELTGLDGLRYISSESDSFGNSIITLTFEAGTDPDIAQVQVQNKV 111

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            G  +KL    ++  +V     +  +++             + S  +     D I     
Sbjct: 112 SGATAKLPEVVQRQGVVVEKSSDTFLMVMAFYSTDGSMTDTDLSDFVASNLEDPISRVPG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP+RL       + ++      N        G   + +    
Sbjct: 172 VGSVQLFGA-EYAMRIWLDPNRLESYGLNPSDVTAAIAEQNTQVSAGQLGATPVVEGQQL 230

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    +   E             +    A    
Sbjct: 231 NATITARSLL-------------RTPEEFEGILLKVEEDGSEVRIRDVARVELGAANYST 277

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                    +    S     +   T+       A LR    P     V          S 
Sbjct: 278 IARYNGQPASGMGISLATGANALDTMNAVNDRIAELRNLFPPGVEMQVPYDTTPFVKLSI 337

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV +V+F+ +   +  L+   +I + V+ T+A+L  LG ++   ++  
Sbjct: 338 ENVVHTLLEAVVLVFLVMFLFLQSFRATLIPTIAIPVVVLGTMAVLMALGYSINTLTMFA 397

Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IGL VD  I+V E +      +      +      +    +    +      V + 
Sbjct: 398 MVLAIGLLVDDAIVVVEGVERVMEEEGLPPLEATRKSMKQLSGALVGIGMVLSAVFVPMA 457

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           FFGG      R F+IT+  ++ +S+  A+ +   + + +++       D      F    
Sbjct: 458 FFGGTTGIIYRQFSITIVTAVALSVLVALILTPTLCVQLMKQGHGSGSDKGFFGWFNRTF 517

Query: 536 DCIAIQFMRARFWGVGISILFSICSIC 562
           D     ++      +       +  + 
Sbjct: 518 DRATNGYVGHVDGFIRRMGRLMLIFVA 544



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 77/223 (34%), Gaps = 8/223 (3%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            + Q   G    L           A    +  ++      V +    +T          +
Sbjct: 281 YNGQPASGMGISLATGANALDTMNAVNDRIAELRNLFPPGVEMQVPYDTTPFVKLSIENV 340

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           +   +  V++  + M +++     +   L     + + +  T+      G   N   + A
Sbjct: 341 VHTLLEAVVLVFLVMFLFLQ---SFRATLIPTIAIPVVVLGTMAVLMALGYSINTLTMFA 397

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  IG  V+D +VV + +     +    +   +   KS+ +  G  V   M      +P
Sbjct: 398 MVLAIGLLVDDAIVVVEGV--ERVMEEEGLPPLEATRKSMKQLSGALVGIGMVLSAVFVP 455

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           MA +GG+       F+I +   + ++   ++ +   + + +  
Sbjct: 456 MAFFGGTTGIIYRQFSITIVTAVALSVLVALILTPTLCVQLMK 498



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/414 (11%), Positives = 118/414 (28%), Gaps = 15/414 (3%)

Query: 409  GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
             A  ++ S+AG       A    + +N    +E    +S   ++     RA+S I ++ +
Sbjct: 601  EAVASVFSVAGFSFAGRGANAGILFMNMVPFKERTTEESSVWAVMGRAQRAFSQIKEAMV 660

Query: 469  TALIATVVL-------FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
                   ++       F        G      +     +         +M          
Sbjct: 661  FVFAPPAIIELGTATGFDMYLQDRTGLGHDALMQGRNQLLGMAMQNPNLMNVRPNGLDDT 720

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF--SICSICLLFTHGLNYGIDFKGGI 579
               +  + +       ++I  +         S      I    +   +  +         
Sbjct: 721  PQFVIEIDQLKAEALGVSINDINNTLTTSFGSAYVNDFIDRGRVKQVYVQSDAQYRMVPS 780

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     R     +V     +    +      +               +   T V     
Sbjct: 781  DIDFWYVRNNQGEMVPLKAITSTRWEFGSPRLERFNGVSAMQIQGQPKAGISTGVAMTTM 840

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +++   +P +       +  +      + G + V+   I  L    +   W      I  
Sbjct: 841  EQLVSQLPNNLNVAWTGLSYEEREAGGQAGALYVLSILIVFLCLAALYESWSVPFSVILV 900

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + L +   +    L G++ ++     +LT +G S  + +++ +  ++    Y       +
Sbjct: 901  VPLGVLGAVIATGLRGLDNDVYFQVGLLTTVGLSAKNAIMIVEFAKQY---YEEGADMVE 957

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                +    L   + TS+A    VLP+A+    G     +    +  G++ A  
Sbjct: 958  AALHAARVRLRPILMTSLAFGFGVLPLALSSGAGSGAQNAVGTGVIGGVITATF 1011


>gi|255318816|ref|ZP_05360042.1| AcrB protein [Acinetobacter radioresistens SK82]
 gi|262378923|ref|ZP_06072080.1| AdeY [Acinetobacter radioresistens SH164]
 gi|255304072|gb|EET83263.1| AcrB protein [Acinetobacter radioresistens SK82]
 gi|262300208|gb|EEY88120.1| AdeY [Acinetobacter radioresistens SH164]
          Length = 1059

 Score =  197 bits (499), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 68/554 (12%), Positives = 158/554 (28%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGVLT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGLDGLRYISSSSAGNGQASIQLNFEQGIDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVRVTKSGASFLQVIAFYSPDDSLSDADIKDYVNSNISEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N        G   L    
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLSSFQLTPSDVANAIRSQNAQVAVGQLGGAPLTKDQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +     +        +    A  
Sbjct: 229 VLNATVTAQSLL-------------QTPEEFSNVFLKNTASGAQVRIGDVAKVELGSADY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T E        LR       ++++          
Sbjct: 276 GFISKYNNKPAAGVAIKLATGANALDTAEAVEARLKELRTSYPQGMVDVLAFDTTPFIKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLVEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     +       + ++   +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEHLDPVTATELSMKQISGALIGITSVLTAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A++   A+   +++         N +   F 
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMILSLIVALTFTPALCATLLKQHDPNKAPSNNIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                    M  R+
Sbjct: 516 RWFNHKFDRMSHRY 529



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 86/249 (34%), Gaps = 8/249 (3%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V +  V              +  +     +        +++     +E   K++    P
Sbjct: 259 QVRIGDVAKVELGSADYGFISKYNNKPAAGVAIKLATGANALDTAEAVEARLKELRTSYP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
              +           +  I   +  ++ + I + I +++  + W   +     + + +  
Sbjct: 319 QGMVDVLAFDTTPFIKLSIESVVHTLVEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T     +FG   N   + A++  IG  V+D +VV + +     +    +      + S+ 
Sbjct: 379 TFAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEHLDPVTATELSMK 436

Query: 767 ETLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +  G  +  TS+      +PMA +GG   VI   F+I +   ++++   ++     +   
Sbjct: 437 QISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMILSLIVALTFTPALCAT 495

Query: 823 IYDWRAKNA 831
           +      N 
Sbjct: 496 LLKQHDPNK 504



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 83/261 (31%), Gaps = 14/261 (5%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N+   +            G    + ++G  +  ++    PG S     +        
Sbjct: 793  VRNNQGQMVPFSAFATGEWTYGSPRLERYNGISSVNIQGTPAPGVSSGDAMLAMQEIMAK 852

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK---WYFALGAITT 699
               + +               E   +    + +S + + + +   ++     F++  +  
Sbjct: 853  LPSMGMQGYDYEWSGLSLEENEAGSQTAALLALSILIVFLCLAALYESWSIPFSVLMVIP 912

Query: 700  LILDITKTLGFFALF-----GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            L +     L F  +       +  N+    A++ +IG +  + +++ +  +   +     
Sbjct: 913  LGIVGAVILTFLGMMISKDPNLSNNIYFKVAIIAVIGLAAKNAILIVEFAKDLQEEG--- 969

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
                +    +    L   + T++A    VLP+A+    G     S    +  G++ +   
Sbjct: 970  EELLEATLHAARMRLRPIIMTTLAFGFGVLPLALSSGAGAGSQHSVGYGVLGGVISSTLL 1029

Query: 812  SIFIAAPILLFIYDWRAKNAR 832
             IF      ++I     +  +
Sbjct: 1030 GIFFIPVFYVWIRSIFKQKPK 1050


>gi|329122117|ref|ZP_08250725.1| protein-export membrane protein SecF [Dialister micraerophilus DSM
           19965]
 gi|327466924|gb|EGF12440.1| protein-export membrane protein SecF [Dialister micraerophilus DSM
           19965]
          Length = 293

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 80/290 (27%), Positives = 143/290 (49%), Gaps = 1/290 (0%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                 ++       IS +  I S   +F    N+GIDF GG  L +   + V +  VR 
Sbjct: 1   MSNFNVIKHSKVWFTISGILVILSFIAIFMFKFNFGIDFTGGTILDLEFKQNVTVQQVRE 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +  +   + Q   G+ +               +   + V + I + +    ++  E 
Sbjct: 61  ELRNNDLETSTIQLL-GDGHEDSGKNVMIRTKNLSSEESQKVIENIKKGIGDVDVKRMET 119

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG  I  E+    ++ V  S +AM+IY+ +RF+   A+ +I  +  DI   LG FA+F +
Sbjct: 120 VGAVIGSEVTENTLLNVGFSFLAMIIYMTVRFEHKIAISSIIAICHDILMVLGAFAIFHL 179

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           E + + +AAVLT++GYS+N+ VV++DR+R+N+  +  + SF  L + SI++T+ RS+YT 
Sbjct: 180 EVDASFLAAVLTVLGYSMNESVVIFDRIRENIHTHKRTDSFAKLANDSIHQTIHRSMYTL 239

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                +   +  +GG    +FA+ M  G +  A SS+ IA  + +  ++ 
Sbjct: 240 STVLFATGALYFFGGDTTKNFALVMLIGFISGAYSSVCIATSLWVKWHER 289


>gi|300309819|ref|YP_003773911.1| acriflavin resistance transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072604|gb|ADJ62003.1| acriflavin resistance transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1048

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 73/618 (11%), Positives = 175/618 (28%), Gaps = 43/618 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G L           + ++P+  P   +                  
Sbjct: 8   RPVFAWVLAIFIMLAGALAI-----TGLPVSQYPNIAPPTIV---------VTATYPGAT 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              ++  +    ++  +            +     +IT++F+     +  A  V   L+ 
Sbjct: 54  AQTLDDSVTSLIEQEMNGADGLQYIESQSQANGQVQITITFSPETNPDLAAVDVQNRLKR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L     +  +  T  +   ++    +        +     + R  +++I       
Sbjct: 114 VEARLPAAVTQQGVQVTKSRSNFLLFIGLSSTDGKLDPVALGDYLSRNVLNEIKRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP++L  L  T A ++      N    G   G      +     
Sbjct: 174 QAQLFGT-ERAMRIWIDPNKLIGLNLTPADVTAAIQAQNALVAGGTLGALPSPGTQQIAA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +++                +    I                 +           
Sbjct: 233 TVVVNGQLT-------------SPEQFGNIILRANANGATVRLRDVARVEVGGQSYDTSG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +          +   T          L           +          S   
Sbjct: 280 RLDGKPSSFIGVQLSPTANALGTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   ++ ++    + + ++ T A L L G ++ + ++ G+V
Sbjct: 340 VVKTLIEAIVLVFLVMFLFLQNIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +      +    +    +  +   + + FF
Sbjct: 400 LAIGILVDDAIVVVENVERIMSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           G   G   R F+++M  S++ S+  A ++  A+   I           +       +   
Sbjct: 460 GGAVGAIYRQFSLSMVASMVFSVLMAFTLTPALCATILKPVEKGHHHEKKGFFGWFNRKF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            S        I     +A  + +   ++ +   +  +         + +G I   V    
Sbjct: 520 NSTASGYQGIIGGMLNKAGRYMIVYVLIVACVGLLYVRLPASFLPNEDQGYIITNVQLPP 579

Query: 588 PVDLSVVRSNLESLQIGD 605
               S   + ++ ++   
Sbjct: 580 GASTSRTTAVVKQIEEYY 597



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 80/197 (40%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
           G + A  + +E + K     V  +   +T         E+++  I  +++  + M +++ 
Sbjct: 301 GTATAVHKKMEELAKYFPTGVKYTIPYDTSKFVKISIEEVVKTLIEAIVLVFLVMFLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                 + +     + + +  T     LFG   N+  +  ++  IG  V+D +VV + + 
Sbjct: 361 ---NIRYTIIPTIVVPVALLGTFATLLLFGFSINVLTMFGMVLAIGILVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +S  D   K++ +  G  +  ++      +PMA +GG+V      F++ M 
Sbjct: 417 -ERIMSEEGLSPADATRKAMGQISGALIGITLVLIAVFIPMAFFGGAVGAIYRQFSLSMV 475

Query: 803 FGIVVAASSSIFIAAPI 819
             +V +   +  +   +
Sbjct: 476 ASMVFSVLMAFTLTPAL 492



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/196 (11%), Positives = 74/196 (37%), Gaps = 10/196 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKWYFAL 694
            E + +  + +  L      E  G  +  +        +  +S IA+ + +   ++   ++
Sbjct: 834  EAMAEMESFVAKLPPGFGFEWTGQSLEEKTSGNQAPALYALSLIAVFLVLAALYEST-SI 892

Query: 695  GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                 L++ +        +    +  ++     ++ ++G S  + +++ +  +    L  
Sbjct: 893  PLAVMLVVPLGILGALLGVTLRAMPNDVYFKVGMIAVVGLSAKNAILIIEFAKD---LQA 949

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
                  +   ++++      + TS+A  + VLP+A+    G +   +    +  G++ A 
Sbjct: 950  QGKGLIEATLEAVHLRFRPIIMTSLAFILGVLPLAIASGAGSASQRAIGTGVMGGMITAT 1009

Query: 810  SSSIFIAAPILLFIYD 825
              ++F+     + +  
Sbjct: 1010 VLAVFLVPIFFVVVRK 1025


>gi|261822531|ref|YP_003260637.1| preprotein translocase subunit SecF [Pectobacterium wasabiae
           WPP163]
 gi|261606544|gb|ACX89030.1| protein-export membrane protein SecF [Pectobacterium wasabiae
           WPP163]
          Length = 322

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 167/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR       IS L  + ++ ++   G N+G+DF GG  + +   +
Sbjct: 5   YNIEQLNHGRKVYDFMRWDTLAFVISGLLIMIAVAIMGVRGFNWGLDFTGGTVIEINLEK 64

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P+DL V+RS+LE+    +   QNF   ++ +VR+    G S  +    +++         
Sbjct: 65  PIDLDVLRSSLETSGFSEPQVQNFGSSRDVMVRMPPVSG-SENEALGNKVLTVVNDTFQQ 123

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+LIYI  RF+W  ALGA+  L  D+  T
Sbjct: 124 HATVKRIEFVGPSVGSDLAQAGALALLSALIAILIYIGFRFEWRLALGAVLALGHDVIIT 183

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+NDK+VV DR+R+N +       + ++ + S+ +
Sbjct: 184 MGLLSLFSIEVDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKIRRGTPY-EITNISLTQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS      +L +  +GG+++  F++ M  G+++   SSI++++ + L +   R
Sbjct: 243 TLHRTIITSATTLAMILILMFFGGALLHGFSMTMFIGVIIGTISSIYVSSALALKLGMKR 302

Query: 828 A 828
            
Sbjct: 303 E 303



 Score = 42.0 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 36/144 (25%), Positives = 72/144 (50%), Gaps = 4/144 (2%)

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
                +  L A  ++  +VI+T+ LLSL    + L  IA ++  IG +++  I+V++RIR
Sbjct: 162 FRFEWRLALGAVLALGHDVIITMGLLSLFSIEVDLTIIASLMSVIGYSLNDKIVVSDRIR 221

Query: 440 EENR---KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           E  R   +      +        + TI  S  T  +  +++FF GG  + GF++TM + +
Sbjct: 222 ENFRKIRRGTPYEITNISLTQTLHRTIITSATTLAMILILMFF-GGALLHGFSMTMFIGV 280

Query: 497 LISMFTAISIVRAMMIFIIRYKKM 520
           +I   ++I +  A+ + +   ++ 
Sbjct: 281 IIGTISSIYVSSALALKLGMKREH 304


>gi|157155020|ref|YP_001464740.1| acriflavine resistance protein F [Escherichia coli E24377A]
 gi|157077050|gb|ABV16758.1| acriflavine resistance protein F [Escherichia coli E24377A]
          Length = 1034

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNSFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|145589971|ref|YP_001156568.1| protein-export membrane protein SecD [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048377|gb|ABP35004.1| protein-export membrane protein SecD [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 619

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 164/516 (31%), Positives = 272/516 (52%), Gaps = 23/516 (4%)

Query: 30  SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   PS +       + LGLDLRGG + +L+VD    V   +   S ++RS L+   I
Sbjct: 113 NLLSNTPSWLNAINALPMPLGLDLRGGVYFLLQVDMKGAVQKKVTALSTDIRSQLRSNNI 172

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +  + IT++F  S  +   A  +    Q              ++      + ++
Sbjct: 173 RHQGIDRSPDSITINF-GSTDEAEAARTLLNTSQP---------DLIWIIRNGAGSVKLL 222

Query: 147 --LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
                  +  + ++A++Q++  + +R++++ + E  IQ+ G+ RI++QLPG QD +R + 
Sbjct: 223 GEFKPKALADIQNNAVKQNIITLNKRVNELAVKEPVIQQQGAERIVVQLPGVQDTARAKD 282

Query: 205 LLGTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           ++G TA +      P     N  +    G    R  +    + +  V  SG ++  A+A 
Sbjct: 283 IIGRTATLESRLADPLVSRINVGEAAPPGTDTFRFGENQMGVFKKSVIFSGDNITDASAG 342

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQAIPSGKA 317
           FD    +P V+IS D  G R   EVTR+NIGKP+ ++L  +    +      Q+    K 
Sbjct: 343 FDQNQ-RPAVNISLDATGGRVMQEVTRENIGKPMGMILFEKGKGEVLTIATIQSEFGAKF 401

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G  T E+A  LA +LRAGSL   + I+EER +G  LG+++I KG  +++ G   I +
Sbjct: 402 QITGQPTTESANDLALLLRAGSLAAPMEIIEERTIGPSLGAENIEKGFKSLLIGFTAISI 461

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FM+  Y  +G  +  ++ +N++L +++LS+L ATLTLP IA + L +G+A+DSN+L+NER
Sbjct: 462 FMVAYYLLFGTFSVIALAVNLLLLISILSMLQATLTLPGIAAMALALGMAIDSNVLINER 521

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           IREE R   S   ++ +GF +A++TI DSN+T LIA + L  FG G ++GFAI   L IL
Sbjct: 522 IREELRNGSSPQMAISIGFDKAWATILDSNVTTLIAGLALLAFGSGPIKGFAIVHCLGIL 581

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            SMF+A+   R ++       K  S           
Sbjct: 582 TSMFSAVFFSRGLVNLWYGRHKKISKLAIGQVWRPQ 617



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 111/291 (38%), Gaps = 7/291 (2%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
            +      G +I  +           +N  +D  GG  +  +    +   +     E  +
Sbjct: 325 FKKSVIFSGDNITDASAGFDQNQRPAVNISLDATGGRVMQEVTRENIGKPMGMILFEKGK 384

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
              ++      E     ++  QP    A    L +    +        I     +GP + 
Sbjct: 385 GEVLTIATIQSEFGAKFQITGQPTTESANDLALLLRAGSLAAP---MEIIEERTIGPSLG 441

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            E I KG   ++I   A+ I++   +   F   ++  L +++   +   ++      L  
Sbjct: 442 AENIEKGFKSLLIGFTAISIFMVAYY-LLFGTFSVIALAVNLLLLISILSMLQATLTLPG 500

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +AA+   +G +++  V++ +R+R+ ++      S +  I    ++     + +++   I+
Sbjct: 501 IAAMALALGMAIDSNVLINERIREELR---NGSSPQMAISIGFDKAWATILDSNVTTLIA 557

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            L +  +G   I  FAI    GI+ +  S++F +  ++   Y    K +++
Sbjct: 558 GLALLAFGSGPIKGFAIVHCLGILTSMFSAVFFSRGLVNLWYGRHKKISKL 608



 Score = 43.5 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 36/124 (29%), Gaps = 21/124 (16%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++ ++   IG L +LPNF  ++   +  SA P  ++ L               
Sbjct: 3   RYPLWKYLVIAVALLIGGLYSLPNFYGEAPAVQVSSAKPTIKVDL--------------- 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                   ++    +            F        I   F ++  +    D +   L  
Sbjct: 48  ---ATQSRVEKILADANISTTG---MFFESAGSVGTIKARFNNTDIQLRARDLLQQKLNT 101

Query: 122 VNSK 125
             + 
Sbjct: 102 DQND 105


>gi|114565012|ref|YP_752526.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114336305|gb|ABI73687.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Shewanella frigidimarina NCIMB 400]
          Length = 1051

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 77/695 (11%), Positives = 183/695 (26%), Gaps = 55/695 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++PS  P               +V+    
Sbjct: 8   RPIFAWVIALLIMLAGVLAI-----KGLPIAQYPSIAPPT-------------VVISAFY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S       ITL+F      +    +V  
Sbjct: 50  PGASAKTMEDTVTQVIEQRMTGLDHLRYISSTSDSFGNATITLTFNAEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D +   
Sbjct: 110 KLQAATPLLPSEVQQQGVKVNKSSSGFLMVLGFVSADGSMGKSDISDYVAANVQDPMSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L Q   T+  +       N        G        
Sbjct: 170 PGVGEITLFGAQ-YAMRIWLDPFKLTQYKLTSIDIVAAIREQNAQISAGQLGGAPSVAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +      +      +       
Sbjct: 229 ELNATVSAQSRL-------------QTPEQFKQIIVKSDSSGANVYLGDVARVELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T E        ++         +           
Sbjct: 276 AVDSYYNGKPASGLAFKLATGANALDTAEGIKAKVNEMKEFFPQGLEVVYPYDTTPFVEQ 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  L+   ++ + ++ T A+LS  G T+   ++
Sbjct: 336 SIEGVVHTLIEAIVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAVLSAAGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +  S +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPLEATRKSMDQITSALVGIGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSI 523
           + F  G      R F+IT+  ++ +S+F AI +  A+   +++                 
Sbjct: 456 MAFMSGSTGVIYRQFSITIVSAMALSVFVAIVLTPALCATMLKPVKKGHTHADTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    +        +     R+    +    L    +   L         + +G +    
Sbjct: 516 NRKFDAMTSRYESSVGSILKRSFRVMLIYVGLVIAVAWIFLRMPTAFLPDEDQGILFTQA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +             L+ +    ++ +       F V      G           +K   T
Sbjct: 576 ILPTNSTQESTVKVLKDVSDYYLTEEKDLVNSVFTVAGFSFAGSGQNMGIAFVSLKDWST 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              P   +++          ++       ++ + +
Sbjct: 636 REAPGEDVKSLAGRAMGRFMQIKE----ALVFAFV 666



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 83/250 (33%), Gaps = 6/250 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       +   +         + L        +++     ++    ++ 
Sbjct: 255 SSGANVYLGDVARVELGAESYAVDSYYNGKPASGLAFKLATGANALDTAEGIKAKVNEMK 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           E  P                + I   +  +I + + + + +++  + +   L     + +
Sbjct: 315 EFFPQGLEVVYPYDTTPFVEQSIEGVVHTLIEAIVLVFLIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    +  G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAVLSAAGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPLEATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++     V   +      +PMA   GS       F+I +   + ++   +I +   +
Sbjct: 433 KSMDQITSALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVFVAIVLTPAL 492

Query: 820 LLFIYDWRAK 829
              +     K
Sbjct: 493 CATMLKPVKK 502



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 75/244 (30%), Gaps = 9/244 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +         V  N    +        S + G    Q F+G     ++    PG S    
Sbjct: 779  MQPGDLDSWYVRNNNGEMVPFSAFASGSWEFGSPQLQRFNGVPAVNIQGATAPGYSTGAA 838

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                    +                      +      + ++I     L+   +   W  
Sbjct: 839  MDALEEMAEKLPPGYGLEWNGLSYEERLSGNQAPSLYALSILIVF---LVLAALYESWSV 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I  + L I   L   +  G+  ++     +LT +G +  + +++ +  ++    Y 
Sbjct: 896  PLSVILVVPLGIIGALLAMSARGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEY---YE 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                  +    ++   L   + TS+A  + V+P+A+    G     +    +  G++ + 
Sbjct: 953  KGSGLIEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGGMMTST 1012

Query: 810  SSSI 813
               I
Sbjct: 1013 FLGI 1016


>gi|226226967|ref|YP_002761073.1| protein-export membrane protein SecF [Gemmatimonas aurantiaca T-27]
 gi|226090158|dbj|BAH38603.1| protein-export membrane protein SecF [Gemmatimonas aurantiaca T-27]
          Length = 334

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 158/305 (51%), Gaps = 6/305 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPV 589
              I      +F+R      G+++ F           G +NY I+F GG  + +    P 
Sbjct: 1   MLRIFHNTKYEFVRWWRVAAGLTLAFIAAGFVSFAVTGGVNYSIEFTGGTLMQLQFKTPP 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ VRS L++  I     Q F    +F +R + +            + ++    +    
Sbjct: 61  DVAEVRSALDAAGIQGAEIQQFGANTDFTIRARDEKQVEAQDAGAEGISRQITAALDAKF 120

Query: 650 -----TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                TI  TE VGPK+  EL     + ++I++I  LIY+ IRF W F L A+ +   DI
Sbjct: 121 GAGTVTIVRTEAVGPKVGAELRTGAAMAMLIASIFTLIYLAIRFDWRFGLAAVLSTTHDI 180

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             TL F  +F IE +LT VAA+LTL+GYS ND ++++DR+R+N+K      +   ++D+S
Sbjct: 181 LITLAFIKIFHIEVSLTVVAAILTLVGYSANDTIIIFDRVRENLKKPHKGETLSHILDRS 240

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           INETL RS+ T    F + L + +  G VI  FA  MAFG+V+A  SSI++A P+LL+I 
Sbjct: 241 INETLPRSIMTHTTTFSATLALLLLAGEVIRPFAWVMAFGVVMATFSSIYVAGPLLLWIE 300

Query: 825 DWRAK 829
               +
Sbjct: 301 GRWPR 305


>gi|289664655|ref|ZP_06486236.1| multidrug efflux transporter [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1047

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++PS  P               + +  + 
Sbjct: 8   RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPA-------------VAITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +K       +   S       ITL+F +    +    +V  
Sbjct: 50  PGASAQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +  T      + +     +       + S  +     + I   
Sbjct: 110 KLSLATPLLPTEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     T   +       N        G      + 
Sbjct: 170 EGVGDTTLFGSQ-YAMRIWMDPNKLSNFSLTPVDVRNAIQAQNAQISAGQLGALPAVANQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        I       
Sbjct: 229 QLNATITAQTRL-------------KTAAQFENILLRTQADGSQVRLRDVARIELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T+               P                
Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLDEQEKFFPPGMKVQKPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++
Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     + Q S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEQLSPKEATRKSMGQISGALIGVALVLAAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------I 523
           + FF G      R F+IT+  ++ +S+  A+ +  A+   +++                 
Sbjct: 456 MAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVHKGHGLATTGLFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     +   + +  + L ++     +         + +G + + V
Sbjct: 516 NRLFNRGNTGYQGVVRHMLGKGWRYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +     L+ ++   +  Q       F V      G           ++    
Sbjct: 576 QLPPGAANARTTEVLKQVEHHFLVDQKESVAGIFAVTGFSFAGSGQNTGLAFVKLRPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 ++ +           +    +  
Sbjct: 636 RTGKGQSVTDVAAKASAFFAGIRDAKVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 87/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++   R ++    +  +  
Sbjct: 258 SQVRLRDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLDEQEKFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEQLSPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  ++      +PMA + GS       F+I +   + ++   ++ +   +   
Sbjct: 436 GQISGALIGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 77/266 (28%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +   A   V  +   +         +   N       L         
Sbjct: 776  PYRMNPQDIDRWFVRNSAGTMVPFNAFATASWQSGSPRLERYNSVPSVEILGMALPGAAS 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            S    +++E    K+   +          +  +      + G++  +   I  L    + 
Sbjct: 836  SGEAMQIVEAAAAKLPPGIGF----EWTGLSRQEKASSGQTGLLYSVSILIVFLCLAALY 891

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L +   L    L     ++     +LT IG +  + +++ +  R+ 
Sbjct: 892  ESWAIPFSVILVVPLGVFGALLAAMLTWKVNDVYFQVGLLTTIGLASKNAILIVEFARE- 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
              L+    S      ++    L   + TS+A  + V+P+ +    G     +    +  G
Sbjct: 951  --LHEGGKSLVTAALEAARMRLRPILMTSLAFILGVVPLVLTSGAGAGAQHALGTAVIGG 1008

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            +V     +IF      + +     + 
Sbjct: 1009 MVSGTVLAIFFVPLFFVLVCGLFQRR 1034


>gi|260870017|ref|YP_003236419.1| multidrug efflux system protein [Escherichia coli O111:H- str.
           11128]
 gi|257766373|dbj|BAI37868.1| multidrug efflux system protein [Escherichia coli O111:H- str.
           11128]
 gi|323178554|gb|EFZ64130.1| inner membrane protein [Escherichia coli 1180]
          Length = 1034

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 185/689 (26%), Gaps = 51/689 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 ++ +           ++    ++
Sbjct: 635 ERNGDENSAEAVIHRAKMEFGKIRDGFVI 663



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|311278618|ref|YP_003940849.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter cloacae SCF1]
 gi|308747813|gb|ADO47565.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter cloacae SCF1]
          Length = 1037

 Score =  197 bits (499), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 76/689 (11%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L  L        ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIL-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITL+F+          +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSSAGQATITLTFSAGTDPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     + +   
Sbjct: 110 QLQSAMKKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQEPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDISAYGSQYSM-RIWLDPAKLTSYQLTTKDVTDAISSQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +                      +       
Sbjct: 229 ALNATVNAQSLL-------------QTPQQFRDITLRVNKDGSLVTLGDVAKVELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           +          
Sbjct: 276 DYLSFYNRNQASGLGIQLASGANEMQTAELVLNRLDQLSHYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIHDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFAILYACGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSAEGLSPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPIHKGEEHGKKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  W +   +L     +  +         + +G     V
Sbjct: 516 NRVFNRNAERYETAVGRILHRSVRWMLIYVLLLGGMVVLFMRLPTSFLPQEDRGMFLTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++ ++    S +  +    F        G+     R+   +K    
Sbjct: 576 QLPSGSTQQQTLKVVKKVENYFFSHEQANVASIFSTIGSGPGGNGQNVARMFVRLKDWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RDPKTGSSFAIIERATKAFNQINEARVFA 664



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 46/430 (10%), Positives = 127/430 (29%), Gaps = 15/430 (3%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L  + +  +    A I L      D N  + +   +     + +  ++         T+ 
Sbjct: 75  LMYMSSQSSSAGQATITLTFSAGTDPNEAMQQVQNQLQSAMKKLPQAVQDQ----GVTVR 130

Query: 465 DSNITALIATVVLFFFGGGAVRGFA--ITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +  T ++    +   G    +  A  +   +   +S    +  + A          +  
Sbjct: 131 KTGDTNILTIAFVSTDGSMDKQDIADYVASNIQEPLSRINGVGDISAYGSQYSMRIWLDP 190

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +                       G                 +  +     +    + 
Sbjct: 191 AKLTSYQLTTKDVTDAISSQNAQIAVGQLGGTPSVDKQALNATVNAQSLLQTPQQFRDIT 250

Query: 583 VLANRP---VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           +  N+    V L  V       +  D        + + L        + +    ++    
Sbjct: 251 LRVNKDGSLVTLGDVAKVELGAESYDYLSFYNRNQASGLGIQLASGANEMQTAELVLNRL 310

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            +++   P               +  I   +  ++ +   + + +++  + +   L    
Sbjct: 311 DQLSHYFPHGLEYKIAYETTSFVKASIHDVVKTLLEAIALVFLVMYLFLQNFRATLIPTI 370

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T       G   N   + A++  IG  V+D +VV + +     +    +S +
Sbjct: 371 AVPVVLMGTFAILYACGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSAEGLSPK 428

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   KS+ +  G  V  +M      +PMA +GG+       F+I +   +V++   ++ +
Sbjct: 429 EATRKSMGQIQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMIL 488

Query: 816 AAPILLFIYD 825
              +   +  
Sbjct: 489 TPALCATLLK 498



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 75/242 (30%), Gaps = 8/242 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S       +         +   E+          G++         +      +  L 
Sbjct: 791  NSSGEMVPFSAFASSRWQTGSPRLERYNGYSAVEIIGEAAPGVSTGTAMNVMEKLVSQLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
            T    E         L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  TGFGLEWTAMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    + G+E ++     +LT+IG S  + +++ +   +   +             +  +
Sbjct: 911  LLATWMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANE---MNAKGQDLLAATLHACRQ 967

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + TS+A    VLPMA     G     +    +  G++ A   +IF      + I 
Sbjct: 968  RLRPIIMTSLAFVFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIR 1027

Query: 825  DW 826
              
Sbjct: 1028 RR 1029


>gi|268591268|ref|ZP_06125489.1| acriflavine resistance protein B [Providencia rettgeri DSM 1131]
 gi|291313239|gb|EFE53692.1| acriflavine resistance protein B [Providencia rettgeri DSM 1131]
          Length = 1052

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 183/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     Q  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIITMLAGLLAII-----QLPVSQYPTIAPPA-------------VSISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAETVQNTVTQVIEQNMNGIDNLVYMSSSSDSSGSASITLTFEAGTDGDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++            + +  +     D +   
Sbjct: 110 KLQLAMPLLPQEVQQQGISVDKSTSSFLMVAGFVSSDGSMGQYDIADYVGSNIKDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P +L +   TT  +     + NN       G      + 
Sbjct: 170 NGVGETQLFGTQ-YAMRIWLKPEQLVKYNMTTTDVINAIKVQNNQVAAGQLGGSPSVANQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +       ++       
Sbjct: 229 RLNVSIIAQTRL-------------NSPEEFSNILLRVNQDGSQVRIKDVADVQLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          ++         +           
Sbjct: 276 STIARFNGKPAAGIGIKLATGANALDTSNNVRAALEEMKPFFPQGLEIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV++V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIMLVVVVMYLFLQNIRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLSPKEATKKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMILSVLVAMILTPALCATMLKPIEKGSHGSQKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +     +     D ++        + V   +L    +   +         + +G     +
Sbjct: 516 NRTFEKQAHHYTDSVSRMLNGTGRYLVIYLLLVVGMAFMFVRLPSSFLPAEDQGVFLSMI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      ++ L+ +     + +  + E  F V      G          ++K    
Sbjct: 576 QLPPGSTQEQTQAVLDEVNNYYHTEEAKNVESVFTVGGFSFAGQGQNMGLAFVVLKNWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            +     I  
Sbjct: 636 RKGDENHVDAIVQRANIALSQKQEALIYA 664



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 90/241 (37%), Gaps = 10/241 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V      D+ +   N  ++   +   +   G    L         S      LE +K  
Sbjct: 259 QVRIKDVADVQLGAENYSTIARFN--GKPAAGIGIKLATGANALDTSNNVRAALEEMKPF 316

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             + + +    +T         E+++  +  +++  + M +++         L     + 
Sbjct: 317 FPQGLEIVYPYDTTPFVKISINEVVKTLVEAIMLVVVVMYLFLQ---NIRATLIPTIAVP 373

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T    + FG   N   + A++  IG  V+D +VV + +     +    +S ++  
Sbjct: 374 VVLLGTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            KS+ +  G  V  +M      +PMA +GGS       F+I +   ++++   ++ +   
Sbjct: 432 KKSMGQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSSMILSVLVAMILTPA 491

Query: 819 I 819
           +
Sbjct: 492 L 492



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 70/184 (38%), Gaps = 7/184 (3%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              E  G      L       +  IS I + + +   ++ W      +  + L I   L F
Sbjct: 859  GYEWTGMSYQERLAGNQAPALYAISLIVVFLCLAALYESWSVPFSVMLVVPLGIIGALLF 918

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             ++ G++ ++     +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 919  TSVRGLDNDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LVEATLNAVKMRLR 976

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + TS+A  + V+P+      G +   S    +  G+  A S +IF      + I    
Sbjct: 977  PILMTSLAFMLGVIPLVFSNGAGSASQNSVGTGVLGGMFAATSLAIFFVPVFFVVIRRRF 1036

Query: 828  AKNA 831
            +K +
Sbjct: 1037 SKKS 1040


>gi|94500097|ref|ZP_01306631.1| AcrB/AcrD/AcrF family protein [Oceanobacter sp. RED65]
 gi|94427670|gb|EAT12646.1| AcrB/AcrD/AcrF family protein [Oceanobacter sp. RED65]
          Length = 1035

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/637 (10%), Positives = 190/637 (29%), Gaps = 44/637 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I   GL+        +  L  +P       +++  D            
Sbjct: 9   KRPVFASVISLIIVAFGLIA-----FDKLPLREYPDIDEP-VVNIRTD--------YTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S ++     +      ++ +T+ F  SR  +  A+ V   +  
Sbjct: 55  AAEVVEKRITQVIEDRISGIEGIKNIISQSEDGESDVTIEFNLSRDIDGAANDVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L    +   +      + +I+      D    + ++ +    R  +D+  + +   
Sbjct: 115 ILQNLPEGAEPPEVSKAGAGDDTIMWFNLVSD--RMNLLQLTDYANRYLVDRFSVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    D  +L     T A ++      N             + +   + 
Sbjct: 173 RVRVGGGLDYAMRIWLDRKQLAARQMTVADIANALRRENIELPAGSIESDQRQFTVRLER 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +S                    ++                 +           
Sbjct: 233 AYPTPEALS--------------------NLVLQNKNGFVVKLKDVARVELGAEEKRKSF 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     + ++  +       A  L   +          +    +      S   
Sbjct: 273 RGNGVPMIGIGITKQSTANTLDVARKARALLTEINETLPEGMDLLASYDSSVFIEQSIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+IV+++ +   +  L+   ++ ++++ +  +L  LG T+ L ++  ++
Sbjct: 333 VYQTLFIAMILVIIVIYLFLGNVRATLIPALTVPVSLLGSFIVLYFLGYTINLLTLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I       +    +  +G  +    I  + +  +   + + F  
Sbjct: 393 LAIGMVVDDAIVMLENIHRRIDSGEPPLVAAFLGARQVAFAIVATTLVLISVFLPITFLE 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    FA+ +  +I  S   A+++   +   ++   + KS       +        
Sbjct: 453 GDIGKLFTEFAVAISAAIGFSSIVALTLSPMLCSQLLHGHEHKSWLTVKTDQVLDSLSRT 512

Query: 539 AIQFMRAR-----FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             ++++ R          + +                   + +G   + V A        
Sbjct: 513 YQEYLKKRLKKPFMTFAMLLVGLLGSVWLFNQVPSEFAPKEDRGAFFVFVSAPEGSSYDY 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
            ++ ++ ++   +   +    K  LVR     G +  
Sbjct: 573 SKAYMDEVEKRLMPMVDSGEVKRLLVRTPRSFGSTSD 609



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 6/228 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    SF+        +   +    +++   R    +  +I E +P 
Sbjct: 253 VKLKDVARVELGAEEKRKSFRGNGVPMIGIGITKQSTANTLDVARKARALLTEINETLPE 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                          + I +    + I+ I ++I I++        L    T+ + +  +
Sbjct: 313 GMDLLASYDSSVFIEQSIEEVYQTLFIAMILVIIVIYLFLGNVRATLIPALTVPVSLLGS 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   NL  + A++  IG  V+D +V+ + +    +   +             +
Sbjct: 373 FIVLYFLGYTINLLTLLAMILAIGMVVDDAIVMLENIH---RRIDSGEPPLVAAFLGARQ 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGIVVAASSSIF 814
                V T++      LP+    G +   F    +A    +   SSI 
Sbjct: 430 VAFAIVATTLVLISVFLPITFLEGDIGKLFTEFAVAISAAIG-FSSIV 476



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + I   L    +F    N+ +   ++ L+G +  + +++ +      
Sbjct: 875  SFIHPLVIMLTVPMAIVGALAGLYIFAQSLNIYSQIGLIMLVGLTAKNGILIVEFCN--- 931

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L      F + I  + +  L   + T++   +  +P+ +    G        I +  GI
Sbjct: 932  QLRDQGKEFEEAILTAASIRLRPILMTAITTGLGAVPLILSFGAGSETRQVIGIVVLTGI 991

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +++   ++ I   +   +  
Sbjct: 992  LISTLFTLLIVPVMYQLLAR 1011


>gi|326794226|ref|YP_004312046.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Marinomonas mediterranea MMB-1]
 gi|326544990|gb|ADZ90210.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Marinomonas mediterranea MMB-1]
          Length = 1035

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 83/684 (12%), Positives = 193/684 (28%), Gaps = 40/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G          Q  + ++P+  P +                    
Sbjct: 9   RPVFAWVISIVIMLAGAFAI-----TQLPISQYPNVAPPSV---------KISATYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + L         S    +  I + F      +    +V   +Q 
Sbjct: 55  AETVENSVTQILEQQLTGLDGLLYFSSSSSSTGRASINVVFEQGTDADTAQVQVQNKIQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   ++++    +     A + S  +I    D +   E   
Sbjct: 115 VTSSLPTSVQQQGVSVSKSQSDFLLIAALYDETDTDTASDLSDYLITSIQDSVSRIEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L       + +S      N        G R          
Sbjct: 175 SVQVFGS-EYAMRIWLDPLKLASYGLMPSDVSSAISAQNTQVAAGSLGQRPSPVGQELNV 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I   +             +           
Sbjct: 234 TVTAQSKL-------------QTPQEFRDIILKYDDNGATVRLSNVATVELGSESYDYVP 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +          +   T E        L             + N      S   
Sbjct: 281 RLNRHPASGMAVMLAPGANALSTSELVKAKLTELARNMPDGYKISFPKDNTAFIKISIEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+F+ +   +  L+   ++ + ++ T  +L + G ++   ++ G+V
Sbjct: 341 VVKTLFEAIALVVIVMFVFLQSWRATLIPAIAVPVVLLGTFGVLQVFGYSINTLTMFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +     +++ S   +         S  I  + + + +   + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERVMEEDKLSPREATIKSMKEITSALIGIAVVLSAVFLPMAFF 460

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+IT+  S+++S+  A+++  A+   +++     +               
Sbjct: 461 SGSTGVIYRQFSITIVSSMILSVIVALTLSPALCATLLKPNHHAAKKGLGGLFNRSFDWA 520

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID-------FKGGIQLGVLANRPVD 590
                 R             +  I +     +   +         +G I + V       
Sbjct: 521 TGRYSGRIAKVVKQPVRWLVLYGIIIGGLWAMMGNLPGGFLPQEDQGDIMVMVSLPEGAS 580

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+     +  ++   ++ +    +  F +      G          ++K       P+++
Sbjct: 581 LTRTSDVMNEVEDHFLNTEGNYVKDIFTISGFNFMGSGQNAGMAFVLLKNWSERQNPMAS 640

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
            Q            L    I  ++
Sbjct: 641 AQAIAGRSWGAFAGLRDAQIFTLL 664



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 93/241 (38%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V +     +  D   +      + +  +     ++++ + +++    ++   +P 
Sbjct: 261 VRLSNVATVELGSESYDYVPRLNRHPASGMAVMLAPGANALSTSELVKAKLTELARNMPD 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
               +         +  I + +  +  +   ++I +++    W   L     + + +  T
Sbjct: 321 GYKISFPKDNTAFIKISIEEVVKTLFEAIALVVIVMFVFLQSWRATLIPAIAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G   +FG   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+ E
Sbjct: 381 FGVLQVFGYSINTLTMFGMVLSIGLLVDDAIVVVENV--ERVMEEDKLSPREATIKSMKE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  ++      LPMA + GS       F+I +   ++++   ++ ++  +   + 
Sbjct: 439 ITSALIGIAVVLSAVFLPMAFFSGSTGVIYRQFSITIVSSMILSVIVALTLSPALCATLL 498

Query: 825 D 825
            
Sbjct: 499 K 499



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 75/234 (32%), Gaps = 9/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +          +  +   G  S   F+G  ++ V+     G S              
Sbjct: 787  VRGSGNTMTPFSAFSDSNWTYGPSSLSRFNGLASYQVQGAAANGVSSGAAMDEMENLADQ 846

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                             + S +      + +++  + +     +   W      I  + L
Sbjct: 847  LPKGASYAWSGLSYQERQSSGQTQMLYAISILVVFLCLA---ALYESWTVPFSVIMVIPL 903

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +  T     L G+E ++    A+LT IG S  + +++ +   +    Y    +  +   
Sbjct: 904  GVLGTAAAAYLRGLENDVYFQVALLTTIGLSSKNAILIVEFAEE---AYRRGATVWEAAK 960

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
            +     L   + TS+A  +  LP+A+    G +   S    +  G + A   +I
Sbjct: 961  EGATLRLRPIIMTSLAFIVGTLPLALSTGAGANSRISIGSGIVGGTLTATLLAI 1014


>gi|71065834|ref|YP_264561.1| preprotein translocase subunit SecD [Psychrobacter arcticus 273-4]
 gi|71038819|gb|AAZ19127.1| protein-export membrane protein SecD [Psychrobacter arcticus 273-4]
          Length = 625

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 152/527 (28%), Positives = 260/527 (49%), Gaps = 41/527 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG   VLEVD D  +   L   S ++R  L+ E I
Sbjct: 103 NLAQTTPQWLRDIGAKPMKLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAERI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            V  ++  +  + L F+D+  +    + +   +    +           +      + + 
Sbjct: 163 AVKGIKNDKRTVVLHFSDTDNRNRAQNVLQSSIGNTFTL-------QSSIDEQGPALILA 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +   +D++ S+A+ Q++  +R RI ++G++E+ +Q  G+ RI+++LPG QD +  +++L
Sbjct: 216 YNDATLDEINSYAVNQNLNTLRNRIAELGVTEALVQSQGASRIVVELPGVQDTAEAKRVL 275

Query: 207 GTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V                        DG   L+E +  ++G  +       
Sbjct: 276 GRTANLEFRMVAEGAENYTGGIPPAGTEAFPFETLDGPPVLLERQAIVTGDKVTN-AQTG 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296
             ++  P V I+ D  G +     TR  +GK +                           
Sbjct: 335 IDESGSPEVSITLDNAGGKLMQNATRTAVGKQMAVVFIENKQRVTYKEDSATGETVEVRT 394

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +      QA+     +I+G  +   A  LA +LR+G+L   +  VEER +G  L
Sbjct: 395 PYAETKVINRANIQAVLGSSFRITGLDSSAEAAELALLLRSGALAAPMYFVEERTIGPSL 454

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G ++I KG  +   G +L+  FMI+ Y  +G++A+ ++ +NVI+ ++++S+LG++LTLP 
Sbjct: 455 GQENIDKGLFSTQVGYLLVFAFMIIFYRLFGVIANIALAVNVIIIISIMSILGSSLTLPG 514

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL IG+AVD+N+L+ ERIREE         ++  GF RAYS+IFD+NIT L+   +
Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREELANGVRPKSAIVAGFDRAYSSIFDANITTLLVAFI 574

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           LF  G G ++GFAIT+ + I+ S+FTAI + RA++      +K    
Sbjct: 575 LFSIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRKSIKR 621



 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 77/185 (41%), Gaps = 4/185 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                   +GP + +E I KG+    +  + +  ++ I ++  F + A   L +++   +
Sbjct: 442 MYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFMIIFYRL-FGVIANIALAVNVIIII 500

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++ G    L  +A ++  IG +V+  V++++R+R+ +         +  I    +  
Sbjct: 501 SIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREELANGVR---PKSAIVAGFDRA 557

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                  ++   +    +   G   I  FAI +A GIV +  ++I +   ++   Y  R 
Sbjct: 558 YSSIFDANITTLLVAFILFSIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRK 617

Query: 829 KNARI 833
              R+
Sbjct: 618 SIKRL 622


>gi|284923280|emb|CBG36374.1| acriflavin resistance protein F [Escherichia coli 042]
          Length = 1034

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G+L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 KRNGDKN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|227113439|ref|ZP_03827095.1| preprotein translocase subunit SecF [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 324

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 167/301 (55%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L        FMR       IS L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 7   YNIEQLNHGRKVHDFMRWDTLAFAISGLLIIASIAIMGVRGFNWGLDFTGGTVIEINLEK 66

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P+DL V+RS+LE+    +   QNF   ++ +VR+    G S  +    +++K        
Sbjct: 67  PIDLDVLRSSLETSGFSEPQVQNFGSSRDVMVRMPPVSG-SENEALGNKVLKVVNDTFQQ 125

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+LIYI  RF+W  A+ A+  L  D   T
Sbjct: 126 HATVKRIEFVGPSVGSDLAQAGALALLSALIAILIYIGFRFEWRLAMSAVLALAHDAIIT 185

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +LF IE +LT +A+++++IGYS+NDK+VV DR+R+N +       + ++ + S+ +
Sbjct: 186 MGLLSLFSIEIDLTIIASLMSVIGYSLNDKIVVSDRIRENFRKVRRGTPY-EITNISLTQ 244

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS      ++ + V+GG+++  F++ M  G+++   SSI++++ + L +   R
Sbjct: 245 TLHRTIITSATTLAMIVILMVFGGALLHGFSLTMFIGVIIGTISSIYVSSALALKLGMKR 304

Query: 828 A 828
            
Sbjct: 305 E 305


>gi|219871165|ref|YP_002475540.1| preprotein translocase subunit SecD [Haemophilus parasuis SH0165]
 gi|219691369|gb|ACL32592.1| preprotein translocase subunit SecD [Haemophilus parasuis SH0165]
          Length = 603

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 158/523 (30%), Positives = 272/523 (52%), Gaps = 39/523 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       +  GLDLRGG   ++EVD +  +        D LR+  +KE  
Sbjct: 93  NLAPATPEWLTSIGGEPMKRGLDLRGGVRFLMEVDMNTALAKQQDQLQDTLRNDFRKEKW 152

Query: 87  GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++++ +N  T + F D+   +     +       N  L        +V   +    +
Sbjct: 153 QYKAVKKAENFATDVEFNDTDTADKAVRYIRRT----NPNLEATYISPTVVRFAQSAQGL 208

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
                        AIEQ++ I+R+R++++G+SE TIQR G+ RI+++LPG QD +R +++
Sbjct: 209 -------ATSRDLAIEQNLSILRKRVEELGVSEPTIQRQGADRIVVELPGVQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLR-----DSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N + +    G+           DG   ++  K  + G H+     +
Sbjct: 262 LGATATLEFRLVNGNANLESAARGIVPADSEIKYSRDGMPTVLYRKTILGGEHI-INATS 320

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +   P V I+ D  G       T+  +GKP+A +                       
Sbjct: 321 GKDERGLPNVSINLDAQGGDLMSNATKSAVGKPMATLYSEFKDSGRRDANGKVILEKHEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +       +      QI+G  +   A  LA +LR+G+L   + IVEER +GA LG+D++ 
Sbjct: 381 VINVATINSRLGSSFQITGINSAAEAQNLAVLLRSGALIAPIVIVEERTIGASLGADNVA 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A + GL L +LF +V Y  +GL A  ++  N++LT+ L+SL+GATLT+P IAGIVL
Sbjct: 441 QGMDASMLGLGLTILFCVVYYKVFGLFATAALLANLVLTIGLMSLIGATLTMPGIAGIVL 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+++D+N+L+ ERI+EE R  +S+  ++  G++ A+++IFDSN+T ++  ++L+  G 
Sbjct: 501 AVGMSIDANVLIYERIKEEIRNGRSIQQAIHEGYNGAFTSIFDSNLTTILVAIILYAVGT 560

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G V+GFA+T+ L ++ISMFTAI+  R ++  +   K++K + I
Sbjct: 561 GPVKGFAVTLALGVMISMFTAITGTRMLVNLVYGGKRVKKLWI 603



 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 81/176 (46%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  + + +G+   ++     +++  + +K  F L A   L+ ++  T+G  +L G
Sbjct: 429 TIGASLGADNVAQGMDASMLGLGLTILFCVVYYKV-FGLFATAALLANLVLTIGLMSLIG 487

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  +A ++  +G S++  V++Y+R+++ ++      S +  I +  N        +
Sbjct: 488 ATLTMPGIAGIVLAVGMSIDANVLIYERIKEEIR---NGRSIQQAIHEGYNGAFTSIFDS 544

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   +  + +   G   +  FA+ +A G++++  ++I     ++  +Y  +    
Sbjct: 545 NLTTILVAIILYAVGTGPVKGFAVTLALGVMISMFTAITGTRMLVNLVYGGKRVKK 600


>gi|294665295|ref|ZP_06730588.1| multidrug efflux transporter [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604931|gb|EFF48289.1| multidrug efflux transporter [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1047

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/689 (9%), Positives = 175/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPAIAPPA-------------VAITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +K       +   S       ITL+F +    +    +V  
Sbjct: 50  PGASAQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +  T      + +     +       + S  +     + I   
Sbjct: 110 KLSLATPLLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     T   +       N        G      + 
Sbjct: 170 EGVGDTTLFGSQ-YAMRVWMDPNKLSNFSLTPVDVRNAIQAQNAQISAGQLGALPAVANQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        I       
Sbjct: 229 QLNATITAQTRL-------------KTAEQFENILLRTQSDGSQVRLRDVARIELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T+               P                
Sbjct: 276 NTVGRYNGRPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++
Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMGEEQLSPKDATRKSMDQISGALIGVALVLAAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSI 523
           + FF G      R F+IT+  ++ +S+  A+ +  A+   +++                 
Sbjct: 456 MAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVSKGHGLATTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     +   + +  + L ++     +         + +G + + V
Sbjct: 516 NRLFDRGNTGYQGVVRHMLGKGWRYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +     L+ ++   +  Q       F V      G           ++    
Sbjct: 576 QLPPGATNARTSDVLKQVEHHFLVDQKESVAGVFAVTGFSFAGSGQNVGFAFVKLRPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 ++ +           +    +  
Sbjct: 636 RTGKGQSVTDVAAKAGAFFAGIRDAKVFA 664



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 89/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++   R ++   ++  +  
Sbjct: 258 SQVRLRDVARIELGSESYNTVGRYNGRPAAGLAIKLATGANALDTVRAIDKSLEEQEKFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   + A++  IG  V+D +VV + +     +    +S +D   KS+
Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMGEEQLSPKDATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  +  ++      +PMA + GS       F+I +   + ++   ++ +   +   
Sbjct: 436 DQISGALIGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 78/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +   A   V  +   +         +   N       L         
Sbjct: 776  PYRMNPQDIDHWFVRNSAGTMVPFNAFATASWQSGSPRLERYNSVPSMEILGMALPGAAS 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            S    +++E    K+   +          +  +      + G++  +   I  L    + 
Sbjct: 836  SGEAMQIVEAAAAKLPPGIGF----EWTGLSRQEKASSGQTGLLYSVSILIVFLCLAALY 891

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L +  TL    L     ++     +LT IG +  + +++ +  R+ 
Sbjct: 892  ESWAIPFSVILVVPLGVFGTLLAAMLTWKMNDVYFQVGLLTTIGLASKNAILIVEFARE- 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
              L+    S      ++    L   + TS+A  + V+P+ +    G     +    +  G
Sbjct: 951  --LHEGGKSLVAAALEAARMRLRPILMTSLAFILGVVPLVLTSGAGAGAQHALGTAVIGG 1008

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            +V     +IF      + +     + 
Sbjct: 1009 MVSGTVLAIFFVPLFFVLVCGLFQRR 1034


>gi|26987571|ref|NP_742996.1| preprotein translocase subunit SecD [Pseudomonas putida KT2440]
 gi|24982246|gb|AAN66460.1|AE016275_5 protein-export membrane protein SecD [Pseudomonas putida KT2440]
          Length = 620

 Score =  197 bits (499), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 166/525 (31%), Positives = 271/525 (51%), Gaps = 41/525 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDL GG H +LEVD D  +   +++Y  E+++ L+KE +
Sbjct: 106 NLAQTTPQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRKERV 165

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S+ Q    I L FAD   +E     +             D             + + 
Sbjct: 166 RYRSLPQQDGGIMLGFADDATREQARALIRKNFN--------DFDLTTTDRNELAVLRLA 217

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+Q  + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++LPG QD +  +++L
Sbjct: 218 LTQAKVAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRIL 277

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F       + K       F     G    VE  + I+G  +  A A+FD    
Sbjct: 278 GKTANLEFRFGAEPGASKATTEVFEFREG--GRSAAVERGLIITGDQVTDAQASFDEHG- 334

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI------------------ 308
           +P V+I  D  G       TR N+G+ +AV+   +      +                  
Sbjct: 335 RPQVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQKPVTRYVKQAVGGVEKDVAVQSFVE 394

Query: 309 ---------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    + +I+G      +  LA +LRAG L   +   EER +G  LG+D
Sbjct: 395 EKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGAD 454

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I KG  A + G++ + LF+I +Y  +G++A  ++  N++L LAL+SLLGATLTLP IAG
Sbjct: 455 NITKGIDASLWGMLFVSLFIIAIYRAFGVLATIALAGNMVLLLALMSLLGATLTLPGIAG 514

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RIREE     SV  ++  GF+RAYS I D+N+T L+   +LF 
Sbjct: 515 IVLTMGMAVDANVLIFSRIREEIAAGMSVQRAIHEGFNRAYSAIVDANLTTLLVGGILFA 574

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G G V+GFA+TM L I  SMFTA+ + RA++      + +K + 
Sbjct: 575 MGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVNLTCGGRDIKKLW 619



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 89/250 (35%), Gaps = 5/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +     V +       + +    +    ++ L       G +         +  +
Sbjct: 372 VTRYVKQAVGGVEKDVAVQSFVEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 431

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   ++  F + A   L 
Sbjct: 432 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIIAIYR-AFGVLATIALA 490

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            ++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      +S +  I
Sbjct: 491 GNMVLLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAA---GMSVQRAI 547

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL- 820
            +  N      V  ++   +    +   G   +  FA+ M+ GI  +  +++ +   ++ 
Sbjct: 548 HEGFNRAYSAIVDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAVMVTRALVN 607

Query: 821 LFIYDWRAKN 830
           L       K 
Sbjct: 608 LTCGGRDIKK 617



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/385 (9%), Positives = 94/385 (24%), Gaps = 28/385 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W   L  ++  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYALIVLVLVVGFIYSAPNLYPDDPAVQISGASSALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----TLSFADSRFKENIADKVTL 117
            D      +        + L ++G G+  +   ++++     +  A         +    
Sbjct: 51  LDRVSKALVDAKIAVKGASLGEKGSGLIRLTNQEDQLPAKDVVRKALGDDYVVALNLAQT 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                        +                    ++  +  A+   M++    +  +   
Sbjct: 111 T--------PQWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAMTARMKVYEGEVKTLLRK 162

Query: 178 ESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
           E    R        I++    +    + R L+              N        +   +
Sbjct: 163 ERVRYRSLPQQDGGIMLGFADDATREQARALIRKNFNDFDLTTTDRNELAVLRLALTQAK 222

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            ++  +Y ++  +      +N           +    I  +  G +   E  R       
Sbjct: 223 VAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVELPGVQDTAEAKRILGKTAN 282

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                G    A      +   +             I    +         +   + N+  
Sbjct: 283 LEFRFGAEPGASKATTEVFEFREGGRSAAVERGLIITGDQVTDAQASFDEHGRPQVNIRL 342

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFM 379
           D     +         G  + V+F+
Sbjct: 343 DGHGGELMSRATRSNVGRSMAVIFI 367


>gi|324009095|gb|EGB78314.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 57-2]
          Length = 1034

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 71/664 (10%), Positives = 179/664 (26%), Gaps = 51/664 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP  L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDPDLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIV 646
               
Sbjct: 635 ERSG 638



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|260900465|ref|ZP_05908860.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AQ4037]
 gi|308106970|gb|EFO44510.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AQ4037]
          Length = 612

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 156/513 (30%), Positives = 272/513 (53%), Gaps = 27/513 (5%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            F   S+   + + M  + I LGLDLRGG   +L VD +           DE+++ L+ +
Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALIDEIKANLRDQ 172

Query: 85  GIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
            +    +R +  N+IT+    +   E    +V  FL+              +  ++ +  
Sbjct: 173 RVRGVQVRAESGNRITV----NSDSEQALSEVNKFLRQNYPS--------WISKSSSRGF 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  S+ NI +  S  ++Q+++I+R RI+++GI+E+ +QR G   I I+LPG QDP++ +
Sbjct: 221 VLEPSEQNIQEFQSSTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++V    + +        L+D+DG   ++  +  ++G H+  A A  D 
Sbjct: 281 NVIGATASLAFYEVKD--ASQAHSSQDLVLQDNDGRTVILAKRPVLTGEHIVNARAGVDK 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+       V      + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +++ ERI+++ R+ +S   ++D+GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMFT +   RAM+  I      + + 
Sbjct: 579 LGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 611



 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L  ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SF   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+   A+ 
Sbjct: 586 SMFTGVFASRAMINLIWGRDARR 608


>gi|293416691|ref|ZP_06659330.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           B185]
 gi|300925989|ref|ZP_07141812.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 182-1]
 gi|301326291|ref|ZP_07219664.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 78-1]
 gi|291432047|gb|EFF05030.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           B185]
 gi|300417933|gb|EFK01244.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 182-1]
 gi|300846992|gb|EFK74752.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 78-1]
 gi|323946887|gb|EGB42903.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H120]
          Length = 1034

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|193066461|ref|ZP_03047506.1| acriflavine resistance protein F [Escherichia coli E22]
 gi|194430246|ref|ZP_03062743.1| acriflavine resistance protein F [Escherichia coli B171]
 gi|260846071|ref|YP_003223849.1| multidrug efflux system protein [Escherichia coli O103:H2 str.
           12009]
 gi|260857393|ref|YP_003231284.1| multidrug efflux system protein [Escherichia coli O26:H11 str.
           11368]
 gi|300904460|ref|ZP_07122306.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 84-1]
 gi|301304266|ref|ZP_07210380.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 124-1]
 gi|192925890|gb|EDV80539.1| acriflavine resistance protein F [Escherichia coli E22]
 gi|194411717|gb|EDX28042.1| acriflavine resistance protein F [Escherichia coli B171]
 gi|257756042|dbj|BAI27544.1| multidrug efflux system protein [Escherichia coli O26:H11 str.
           11368]
 gi|257761218|dbj|BAI32715.1| multidrug efflux system protein [Escherichia coli O103:H2 str.
           12009]
 gi|300403622|gb|EFJ87160.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 84-1]
 gi|300840392|gb|EFK68152.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 124-1]
 gi|323154485|gb|EFZ40686.1| inner membrane protein [Escherichia coli EPECa14]
 gi|323162951|gb|EFZ48786.1| inner membrane protein [Escherichia coli E128010]
          Length = 1034

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 185/689 (26%), Gaps = 51/689 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 ++ +           ++    ++
Sbjct: 635 ERNGDENSAEAVIHRAKMEFGKIRDGFVI 663



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|170723503|ref|YP_001751191.1| preprotein translocase subunit SecF [Pseudomonas putida W619]
 gi|169761506|gb|ACA74822.1| protein-export membrane protein SecF [Pseudomonas putida W619]
          Length = 302

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 159/287 (55%), Gaps = 5/287 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R     I++L ++ ++   +  GLN+G+DF GG  + +   RP DL  VR+
Sbjct: 1   MKTINFMGVRNVAFAITVLLTVLALFSWWQKGLNFGLDFTGGTLIELTYERPADLKAVRA 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L      D   Q+F    + LVR+         +                 +T++  E 
Sbjct: 61  ELVESGFQDAVVQSFGATTDLLVRMPGDDPMLGNKVAEALQKI----GGDNPATVKRVEF 116

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  TLG  + F I
Sbjct: 117 VGPQVGEELRDQGGLGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQI 176

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            F+LT +AAVL +IGYS+ND +VV+DR+R+N ++     S  + I+ S  +TL R+V TS
Sbjct: 177 TFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRVMRK-ASLIENINISTTQTLLRTVATS 235

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++  +++  +  +GG  +  F++ +  G++    SSI+IA  +L+++
Sbjct: 236 VSTLLAIAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 282


>gi|292487494|ref|YP_003530366.1| multidrug efflux transporter [Erwinia amylovora CFBP1430]
 gi|33520756|gb|AAQ21216.1| multidrug efflux transporter [Erwinia amylovora]
 gi|291552913|emb|CBA19958.1| multidrug efflux transporter [Erwinia amylovora CFBP1430]
          Length = 1048

 Score =  196 bits (498), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 68/684 (9%), Positives = 176/684 (25%), Gaps = 43/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L     +  ++++P+  P                     +
Sbjct: 8   RPIFAWVIAIIVMLAGTLSIL-----KLPIEQYPNVAPPAIE---------ITATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        S       ++TL+F      +    +V   LQ 
Sbjct: 54  AKTLQDSVTQVIEQNMNGIDGLMYMGSSSDSSGTLQLTLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D       + S  +     D +       
Sbjct: 114 ATPLLPQEVQQQGISVQKSSSSFLMVAGFINDSGTMTQNDISDYVGSNIKDPLSRVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   +       N        G            
Sbjct: 174 DTQLFGAQ-YAMRIWMDPHKLNNYQLTPVDVISAINTQNAQVAAGQLGGSPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        R       +I           
Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNADGSRVRLSDVAHIELGGENYEVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          L          +           S + 
Sbjct: 280 RYNGQPASGLGIKLATGANALDTAAAVKAELVKLEPFFPSGLKVVYPYDTTPFVKISINE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A++S  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKSMDQIQGALVGIALVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++++S+  A+ +  A+   +                   +   
Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVIVALILTPALCATMLKPINKGDHGKTTGFFGWFNRLF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + V   ++    +   L         + +G          
Sbjct: 520 DKSTHHYTDSVGHIVRSTGRYLVIYLLIVVGMAFLFLRLPTSFLPEEDQGVFLTMAQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +    ++ +  +    F V      G           +K        
Sbjct: 580 GATQERTQKVLDQVTDYYLNKEKTNVNSVFTVNGFGFAGRGQNTGLAFVSLKPWDERSGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671
            + +             +    ++
Sbjct: 640 ENKVPAITGRAMGALSAIKDAMVI 663



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 89/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       +  ++  +      + L        +++     ++    K+    
Sbjct: 258 SRVRLSDVAHIELGGENYEVIARYNGQPASGLGIKLATGANALDTAAAVKAELVKLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 436 DQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALILTPAL 492



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 7/193 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G   A     E +         L T    +  G      L       +  IS I + + +
Sbjct: 828  GQPAAGKSSGEAMNLMQELASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L F  L G+  ++  V  +LT IG S  + +++ + 
Sbjct: 888  AALYESWSIPFAVMLVVPLGVIGALIFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEF 947

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  M+         +   +++   L   + TS+A  + VLP+A+    G     +    
Sbjct: 948  AKDLMEKEGKG--LVEATLEAVRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTG 1005

Query: 801  MAFGIVVAASSSI 813
            +  G+V A   +I
Sbjct: 1006 VMGGMVTATVLAI 1018


>gi|222034982|emb|CAP77725.1| acriflavine resistance protein F [Escherichia coli LF82]
 gi|312947823|gb|ADR28650.1| multidrug efflux system protein [Escherichia coli O83:H1 str. NRG
           857C]
          Length = 1034

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G+L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|218689284|ref|YP_002397496.1| putative efflux pump [Escherichia coli ED1a]
 gi|218426848|emb|CAR07700.2| Putative efflux pump (Putative multidrug-efflux transport protein)
           [Escherichia coli ED1a]
          Length = 1035

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 186/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     D+    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           V  IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VQAIGLLVDDAIVVVENVERIMRDEGLPAPEATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592
               Q       R     + +   +     L    L           ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRTARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 85/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +   +  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVQAIGLLVDDAIVVVENV--ERIMRDEGLPAPEATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 42.0 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|77918704|ref|YP_356519.1| AcrB/AcrD/AcrF family cation efflux protein [Pelobacter
           carbinolicus DSM 2380]
 gi|77544787|gb|ABA88349.1| cation/multidrug efflux pump of the AcrB/AcrD/AcrF family
           [Pelobacter carbinolicus DSM 2380]
          Length = 1060

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 79/696 (11%), Positives = 190/696 (27%), Gaps = 56/696 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G L           ++++P   P               + +    
Sbjct: 10  RPIFATVLSVLIVIVGGLA-----YFSLPIEQYPQVAPPT-------------IEITATY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +   EG+     +   +    +T++FA     +     V  
Sbjct: 52  PGANAETVAATVATPIEQEVNGVEGMLYMFSQSTSDGRMTLTITFALGTDLDTAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + T       +++                   +   +D+I   
Sbjct: 112 RVAVAEPRLPEEVRRLGITTKKNTPDLMLVVNMYSPDGTYDQTYIGNYAVLNILDRIRRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP R++    T   +       N    G           +
Sbjct: 172 DGVGNVRLFGASEYAMRIWLDPDRIQSFGMTPGDVLDALRAQNVQVAGGALNQAPQPKQN 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y+V+ +  +                 +    I       R  +      I       
Sbjct: 232 YYEYVVQTQGRL-------------KAPEEFGDIIVKSGENGRIVYLRDIARIELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T +        +     P     +          
Sbjct: 279 ATKGYLGKYPAVALPAYQRPGSNALETADAIIKEMREIGKDFPPGLQYDIAYNPTQFIEE 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LVLIV+ + +   +  ++   +I +++I T A+++ LG +L   ++
Sbjct: 339 SVVAVQHTVYEAIVLVLIVIVLFLQTWRAAIIPIVAIPVSLIGTFAVMAALGFSLNTLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +    R   S   +     +   S +    +  +   +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERNMRAGLSPRDAARKTMTEVGSALVAIGLVLVAVFLPT 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F G   G   + F IT+ ++ +IS+F ++++  A+   +++     +       +  L 
Sbjct: 459 IFLGGLSGKFYQAFGITIAVATMISVFVSLTLSPALAAILMKPGDHDTHGPGRWYKTPLR 518

Query: 535 PDCIAIQFMRAR-----------------FWGVGISILFSICSICLLFTHGLNYGIDFKG 577
                                           +  + L ++                 +G
Sbjct: 519 FFFHYFNTGMEWLSDRYGRLVGKLVFLGGPVLLLYAGLMALTGWQFDRVPSGFIPPMDQG 578

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + V       LS     ++      ++    D    F         ++     +   
Sbjct: 579 YAIVSVELPPGASLSETDKVVQVATRKLLAIDGVDDVIGFAGFSGATRANASNAAGLFPT 638

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +K          T ++           +    IV +
Sbjct: 639 LKPFKEREKKGITFESLLQKMRTEMATIKEASIVVI 674



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/450 (10%), Positives = 133/450 (29%), Gaps = 30/450 (6%)

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI--REENRKNQSVFCSLDMGFSRAYST 462
            L  +     +   AG          +   +   +   +E  K    F SL        +T
Sbjct: 606  LLAIDGVDDVIGFAGFSGATRANASNAAGLFPTLKPFKEREKKGITFESLLQKMRTEMAT 665

Query: 463  IFDSNITAL-------IATVVLFFFGGGAVRGFAITMGLSILISMFTAISI-----VRAM 510
            I +++I  +       I +   +        G  +    S + +M  A +       R++
Sbjct: 666  IKEASIVVIPPPPVRGIGSAGGYRMMIQDRGGRGVDALNSAVWAMAEAANGPGTPETRSV 725

Query: 511  MIFI--IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
              F      +    ID     R  +                      +   +  +     
Sbjct: 726  FTFFEKNTPQTFLDIDREKAERLHVPVSRAYEALEVFIGSAFVNDFNYLGRTFRVTAQAD 785

Query: 569  LNYGIDFKGGIQLGVLANR--PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
              Y +  +  +++ V ++    V L  +     +     +   N       +        
Sbjct: 786  APYRLSAEDMLRIKVRSDDGAMVPLGSIARVHNAAGPSRMPRYNLYPSAALIGDTAPGYS 845

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   +  +  K + E +                +      ++  +++ + + + +  
Sbjct: 846  SGQALEAMERLADKVLPEGIGY-----EWTELAYQQKATGNTAVIAFVLAVVFVFLLLAA 900

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +++ W   L  I  + + +   +   AL G++ N+      + L+G +  + +++ +  R
Sbjct: 901  QYESWTLPLSVILIVPMCLLSAISGVALMGMDNNVLTQIGFVVLVGLACKNAILIVEFAR 960

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
            +  +             ++ +  L   + TS A  + V+PM +    G  +  +  + + 
Sbjct: 961  ELERQGRDRW---QAAVEAAHLRLRPILMTSFAFILGVVPMVLAQGAGAEMRRALGVAVF 1017

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G++      +       +          +
Sbjct: 1018 SGMLGVTFFGLVFTPVFYVLCRKLSLIRVK 1047



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/130 (24%), Positives = 52/130 (40%), Gaps = 4/130 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  A+  I  + + +  T    A  G   N   +  ++  IG  V+D +VV + M +NM+
Sbjct: 365 WRAAIIPIVAIPVSLIGTFAVMAALGFSLNTLTLFGLVLAIGIVVDDAIVVVENMERNMR 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                +S RD   K++ E     V   +      LP    GG     F       I VA 
Sbjct: 425 A---GLSPRDAARKTMTEVGSALVAIGLVLVAVFLPTIFLGGLSGK-FYQAFGITIAVAT 480

Query: 810 SSSIFIAAPI 819
             S+F++  +
Sbjct: 481 MISVFVSLTL 490


>gi|331654864|ref|ZP_08355864.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           M718]
 gi|331048246|gb|EGI20323.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           M718]
          Length = 1034

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|296282527|ref|ZP_06860525.1| hydrophobe/amphiphile efflux-1 HAE1 [Citromicrobium bathyomarinum
           JL354]
          Length = 1081

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 80/647 (12%), Positives = 171/647 (26%), Gaps = 46/647 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L      L    ++++P   P               L + V  
Sbjct: 8   RPIFAWVVSLGILLAGFLA-----LRALPIEQYPEVAPP-------------SLTISVVY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+   +  +   L        +   S+      IT++F      +    +V  
Sbjct: 50  PGADAETLEENVTQVIEQQLNGVDGFLYMSSSSISNGTATITVTFEAGTDIDIAQTEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V ++L  + ++  +         +++             +       Q +D++   
Sbjct: 110 RLSTVEARLPEEVRRQGITVRQANSGFLMIVALTSKGGQYDTNDLGNIASTQVVDELRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP  L     + + +       N    G   G + L D  
Sbjct: 170 NGVGDVQLFGS-EYAMRIWLDPDALASYKLSPSAVLAAIREQNAQTAGGSIGAQPLADGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +      +                +    I     GA          +       
Sbjct: 229 QITATISTDGRFT-------------TAEEFENIILRASNGAAVVRLGEVARVEIGAQTY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L    +           +     E        +  G        +          
Sbjct: 276 ASSTALNGKPMAGMAVQLATGANALAAAEGVKERLEEIAPGLPGDVTWSIPYDTTPFVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+    + + +      L L G ++ + S+
Sbjct: 336 SVEEVVKTLVEAMFLVFLVMFLFLQNWRATLIPTLVVPIALAGACLGLWLFGFSINVLSL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +    I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVIENVERIMREEGLPPVQATRKAMGQISGAIIGITLVLVAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R F++T+ ++I  S F A+S+  A+         +K I+        +
Sbjct: 456 MAFFPGSTGGIYRQFSVTLAIAIFFSAFLALSLTPALCATF-----LKPIEKGHDHATEI 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             D  A      R          +                  +   ++     R + + +
Sbjct: 511 EVDEEAEAQPGWRGRLARARGKSARFFARFNRWFARMQEKYGRANDRILSRPFRALAVFL 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
             + +  L    +       E    +    Q      Q R  E ++ 
Sbjct: 571 ALALVTVLLFMRLPTAFLPTEDQGYLITAVQAPPGATQERTDEALEP 617



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           + +   G    L         +      LE +   +   V  S   +T         E++
Sbjct: 282 NGKPMAGMAVQLATGANALAAAEGVKERLEEIAPGLPGDVTWSIPYDTTPFVEASVEEVV 341

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           +  +  + +  + M +++     W   L     + + +        LFG   N+ ++  +
Sbjct: 342 KTLVEAMFLVFLVMFLFLQ---NWRATLIPTLVVPIALAGACLGLWLFGFSINVLSLFGM 398

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  IG  V+D +VV + +     +    +       K++ +  G  +  ++      LPM
Sbjct: 399 VLAIGILVDDAIVVIENV--ERIMREEGLPPVQATRKAMGQISGAIIGITLVLVAVFLPM 456

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           A +    G +   F++ +A  I  +A  ++ +   +
Sbjct: 457 AFFPGSTGGIYRQFSVTLAIAIFFSAFLALSLTPAL 492



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 63/160 (39%), Gaps = 8/160 (5%)

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            S + + + +   ++ W   L  +  + + +   + F    G+  ++     ++T+IG + 
Sbjct: 901  SVVIVFLVLAALYESWAVPLAVLLIVPMGVLGAVLFSMFRGLSADVYFNVGLITIIGLAA 960

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV 793
             + +++ +   +  +     I   D +  +    L   + TS+A  + ++P+    G   
Sbjct: 961  KNAILIVEFAIEEEQRGLRRI---DAVKAAAKLRLRPIIMTSLAFTMGMVPLVLASGAGA 1017

Query: 794  IGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAKNA 831
                A+      G++ A    IF+  P+L  +   +    
Sbjct: 1018 ASRIAVGTGVMGGMIAATVLGIFLI-PMLYLLVRRKISRK 1056


>gi|260072734|gb|ACX30630.1| preprotein translocase subunit SecD [uncultured bacterium
           ARCTIC96BD-19]
          Length = 615

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 164/519 (31%), Positives = 283/519 (54%), Gaps = 36/519 (6%)

Query: 32  LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
           + ++ S++    +SLGLDLRGG H +LEVD +      +  Y +ELR+ L+K+ +    +
Sbjct: 108 IPQWLSSLGGRAMSLGLDLRGGVHFLLEVDMNAVTAMAMDRYYNELRATLRKDKL-YKKI 166

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           ++ ++ + +SF     K      +        S L             E    I  S  +
Sbjct: 167 QKNEDILLVSFKTEELKNKAKKVIK-------SDLPDLIIAEGSEQELELGYEISSSAQS 219

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
             ++   A++Q++  +R R++++G++E  IQ+ G+ RI++QLPG QD +R +++LG  A 
Sbjct: 220 AAKL--SALKQNITTLRNRVNELGVAEPIIQQQGTERIVVQLPGVQDTARAKEILGAVAT 277

Query: 212 MSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           + F  V   N  +          G +  +  DG   L++  V  +G ++    ++   + 
Sbjct: 278 IEFRMVDEKNDVQTAIQSGKTPAGSKIYKFKDGRPLLLKTNVITTGENIVD-ASSSMDEN 336

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLTAP 306
           ++P V I  D  G R   + T++ IG  +                         + +   
Sbjct: 337 NQPSVSIVLDSSGGRSMLDTTKEFIGYRMAVVFIENKVETVLEDGIAVKKRSKTQDIINA 396

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q   S + QI+G  +   A  LA +LRAGSL   + I+EER +G  LG+D+I KG  
Sbjct: 397 ATIQGTFSNRFQITGLDSSREATNLALLLRAGSLSAPVEIIEERTIGPSLGADNIQKGLI 456

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G  L+++FM   Y  +GLVA+ ++ +N++  +++LSL+ ATLTLP IAGIVL +G+
Sbjct: 457 SVLVGFALVLVFMAWRYRVFGLVANLALTINLVTIVSILSLIQATLTLPGIAGIVLTVGM 516

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+N+L+ ER++EE R  +++  ++  G+ +A  TI D+NIT LIA++VLF FG GA++
Sbjct: 517 AVDANVLIFERVKEELRATKNIQKAISAGYEKALLTIADANITTLIASIVLFSFGTGAIK 576

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GFA+T+ + I+ SMFTAI + RA++  I   KK++ + I
Sbjct: 577 GFAVTLSIGIITSMFTAIIVSRAVINIIYGGKKIEELAI 615



 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 103/254 (40%), Gaps = 4/254 (1%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F G     V     V+  +        +       N    +          G   ++   
Sbjct: 360 FIGYRMAVVFIENKVETVLEDGIAVKKRSKTQDIINAATIQGTFSNRFQITGLDSSREAT 419

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
              +  +   +     I     +GP +  + I+KG++ V++    +L+++  R++  F L
Sbjct: 420 NLALLLRAGSLSAPVEIIEERTIGPSLGADNIQKGLISVLVGFALVLVFMAWRYRV-FGL 478

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A   L +++   +   +L      L  +A ++  +G +V+  V++++R+++ ++    +
Sbjct: 479 VANLALTINLVTIVSILSLIQATLTLPGIAGIVLTVGMAVDANVLIFERVKEELRA---T 535

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + +  I     + L      ++   I+ + +  +G   I  FA+ ++ GI+ +  ++I 
Sbjct: 536 KNIQKAISAGYEKALLTIADANITTLIASIVLFSFGTGAIKGFAVTLSIGIITSMFTAII 595

Query: 815 IAAPILLFIYDWRA 828
           ++  ++  IY  + 
Sbjct: 596 VSRAVINIIYGGKK 609


>gi|157162747|ref|YP_001460065.1| acriflavine resistance protein F [Escherichia coli HS]
 gi|194440028|ref|ZP_03072085.1| acriflavine resistance protein F [Escherichia coli 101-1]
 gi|312972465|ref|ZP_07786639.1| acriflavine resistance protein F [Escherichia coli 1827-70]
 gi|157068427|gb|ABV07682.1| acriflavine resistance protein F [Escherichia coli HS]
 gi|194421032|gb|EDX37062.1| acriflavine resistance protein F [Escherichia coli 101-1]
 gi|310334842|gb|EFQ01047.1| acriflavine resistance protein F [Escherichia coli 1827-70]
 gi|323941641|gb|EGB37820.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E482]
 gi|323970319|gb|EGB65589.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli TA007]
          Length = 1034

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|320202175|gb|EFW76750.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli EC4100B]
          Length = 1034

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 185/689 (26%), Gaps = 51/689 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 ++ +           ++    ++
Sbjct: 635 ERNGNENSAEAVIHRAKMEFGKIRDGFVI 663



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|188492799|ref|ZP_03000069.1| acriflavine resistance protein F [Escherichia coli 53638]
 gi|188487998|gb|EDU63101.1| acriflavine resistance protein F [Escherichia coli 53638]
          Length = 1034

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|146308731|ref|YP_001189196.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           mendocina ymp]
 gi|145576932|gb|ABP86464.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas mendocina ymp]
          Length = 1047

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 72/689 (10%), Positives = 181/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  ++++PS  P               + ++V  
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----KLPINQYPSIAPPA-------------VAIQVSY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L        +   S      +I ++F      +    +V  
Sbjct: 50  PGASAQTVQDTVVQVIEQQLNGLDGLRYVSSSSNSDGSMEIIVTFEQGVNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +  T      +++             + S  I+    D I  +
Sbjct: 110 KLQLATPLLPQEVQQQGIRVTKSVRNFLMVIGVVSKDGSMTREDLSDYIVSNLQDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L     T   +       N       FG       +
Sbjct: 170 KGVGDFQVFGAQ-YAMRIWLDPAKLNAFQLTPVDVRSAIQAQNVQISSGQFGGLPAAPGN 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K  +                 +    +   +    +        +       
Sbjct: 229 QLNATIIGKTRL-------------QSPEEFRKILLKVQADGSQVRLDDVAKVELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T +      A L          +           
Sbjct: 276 AINAQFNGLPASGLAIRLATGANALDTAKAVRETIATLEPFFPAGMEVVFPYDTTPVISA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SIEGVVHTLFEAIVLVFLVMFLFLQNLRATIIPTMAVPVVLLGTFGVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +         S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMREDGLSPKEATRKSMGQIQGALIGIALVLSAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++ +S+  A+    A+   +           +       
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALIFTPALCATLLKPIDGEHHEAKRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R   + +    + ++ +             + +G +   V
Sbjct: 516 NRTFDRTSNAYQRGVAGMLKRKAPYLLLYLAIVAVMAFMFSRIPTAFLPEEDQGVLFAQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  ++ ++   +  +    +  F V      G   +      M+K    
Sbjct: 576 QTPSGSSAERTQVVVDEMRQYLLEEEASTVKSVFTVTGFNFAGRGQSSGMAFIMLKPWGE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +        +         +  
Sbjct: 636 RPGEENGVAALAQRAQRHFFSFRDAMVFA 664



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 84/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   I+ Q      + L        +++   + +      +    
Sbjct: 258 SQVRLDDVAKVELGGENYAINAQFNGLPASGLAIRLATGANALDTAKAVRETIATLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I   +  +  + + + + +++  +     +     + + + 
Sbjct: 318 PAGMEVVFPYDTTPVISASIEGVVHTLFEAIVLVFLVMFLFLQNLRATIIPTMAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFGVLAAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMREDGLSPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  ++      LPMA +GGS       F+I +   + ++   ++     +   
Sbjct: 436 GQIQGALIGIALVLSAVFLPMAFFGGSTGVIYRQFSITIVSAMALSVLVALIFTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 75/252 (29%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +            G      ++G     +     PG S              
Sbjct: 789  VRNDQGRMVPFSAFASGEWTYGAPKLARYNGVSAVEILGAPAPGYSTGDAMAAVEEIASQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +     ++  I+  + +     +   W      +  + L
Sbjct: 849  LPQGVGYSWTGLSYEERLAGSQTTALFVISAIVVFLCLA---ALYESWSIPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L F  L G+  ++     +LT IG S  + +++ +  +     Y   +   +   
Sbjct: 906  GIIGALLFTELRGLSNDVFFKVGLLTTIGLSARNAILIVEFAK---AQYEQGMGLAEAAI 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   V TS+A  +  LP+A+    G     +    +  G++ A   +IF     
Sbjct: 963  EACRMRLRPIVMTSLAFILGCLPLAIASGAGAGSKHAIGTGVIGGMLSALVLAIFWIPLF 1022

Query: 820  LLFIYDWRAKNA 831
             + +     K  
Sbjct: 1023 YVVVCSLFEKKR 1034


>gi|170018491|ref|YP_001723445.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Escherichia
           coli ATCC 8739]
 gi|169753419|gb|ACA76118.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli ATCC 8739]
          Length = 1034

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E++     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVEKVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV +++     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEKV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|331646621|ref|ZP_08347724.1| multidrug efflux protein [Escherichia coli M605]
 gi|331045373|gb|EGI17500.1| multidrug efflux protein [Escherichia coli M605]
          Length = 1035

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     D+    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASSSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q        R        +     + L+        +  +   ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 42.0 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|238788040|ref|ZP_04631836.1| Acriflavine resistance protein B [Yersinia frederiksenii ATCC
           33641]
 gi|238723988|gb|EEQ15632.1| Acriflavine resistance protein B [Yersinia frederiksenii ATCC
           33641]
          Length = 1050

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 179/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMLQEDIADYVGSNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 TGVGDVQLFGSQ-YAMRIWMDPHKLNNFGLTPVDVISAIRVQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLT-------------TAEEFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +A        + V    L  +  +  +         + +G     V
Sbjct: 516 NRMFEKSTHHYTDSVANILRSTGRYLVIYLALVIVMGLLFIRLPSSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      ++ L  +    +  +       F V      G           +K    
Sbjct: 576 QMPAGATQERTQNVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RPGDQNKVPAIVGRASAAFSQIKDGLVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + + +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 436 EQIQGALVGIALVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALMA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +L G+E ++     +LT IG S  + +++ +  +  M          +   +++   L 
Sbjct: 915  ASLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLEAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+ +    G     +    +  G++ A   +I
Sbjct: 973  PILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018


>gi|307627132|gb|ADN71436.1| Putative efflux pump (Putative multidrug-efflux transport protein)
           [Escherichia coli UM146]
          Length = 1022

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q        R        +     + L+        +  +   ++ V    P   +
Sbjct: 520 EDKYQRGVIYVLRRAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 489



 Score = 43.1 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 72/243 (29%), Gaps = 9/243 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 786  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLF 822
            L +
Sbjct: 1020 LYW 1022


>gi|222087653|ref|YP_002546190.1| multidrug-efflux system [Agrobacterium radiobacter K84]
 gi|221725101|gb|ACM28257.1| multidrug-efflux system [Agrobacterium radiobacter K84]
          Length = 1052

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/527 (14%), Positives = 153/527 (29%), Gaps = 40/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +           + ++P   P               +V+    
Sbjct: 10  RPVFAAVISIVILLAGAVCI-----RLLPIAQYPELTPP-------------QVVVTATY 51

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +        +   +      +IT++FA     +  A  V  
Sbjct: 52  PGASAETVAQTVAAPLEQQINGVENMLYMQSSNSNSGAMQITVTFALGTDPDQAAINVNN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   + L  D  +  +V T      +                     +   ID +   
Sbjct: 112 RVQRAVTTLPQDVTRLGVVVTKRSTSILGFVAMYSTDSRYDRAFVGNYALLNVIDDLKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N+      FG +    + 
Sbjct: 172 PGVGDVNLLGDIDYSMRIWLRPDKLAQYNLTPSDVSAAIQEQNSQFAAGRFGDQPSNTAQ 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  +  ++ I                   I   +  A          I       
Sbjct: 232 PFTYTVTTQGRLADID-------------AFGDIILRSDANAATLRLKDVARIELGTKSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T+         L+          +          
Sbjct: 279 SVQSSLNGTPAIPIAVYLQPGANALNTMSALKGRLDELQKSFPQGVAYQIPYDTTKFIQV 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 339 SIEEVGRTFIEAILLVIIVVFVFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +           +    +      + 
Sbjct: 399 FGLVLAIGIVVDDAIVVLENVERLMTTEKLSPKQAAIKAMGEVTGPVIAIVLVLCAVFIP 458

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   + FA+T+ +S+ IS   A+++  A+   I++    
Sbjct: 459 VSFMGGLAGQMYKQFAVTIAISVTISGIVALTLTPALCALILKPGHH 505



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 77/197 (39%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A    L+ ++K   + V      +T         E+ R  I  +++  I + +++ 
Sbjct: 304 NTMSALKGRLDELQKSFPQGVAYQIPYDTTKFIQVSIEEVGRTFIEAILLVIIVVFVFLQ 363

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 364 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 419

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S +    K++ E  G  +   +      +P++  G   G +   FA+ +A
Sbjct: 420 -ERLMTTEKLSPKQAAIKAMGEVTGPVIAIVLVLCAVFIPVSFMGGLAGQMYKQFAVTIA 478

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 479 ISVTISGIVALTLTPAL 495



 Score = 65.9 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 85/254 (33%), Gaps = 12/254 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   + + + L  +     ++    +   N                   A   + ++  +
Sbjct: 788  VRSDSGKMIPLDTLIKVTRTIGPDQLERYNAFNAAKVTGNPAPGYTSGDAIKAMQQVAAE 847

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + E   ++   +               G   +I   I + + +  +++ W   L  +T 
Sbjct: 848  TLPEGFQIAWTGSAYQELETGGA-----GTQAMIFGIIMVFLILAAQYEKWSLPLAVLTA 902

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +   +   L    L G+  ++     ++TLIG +  + +++ +     +      +S  +
Sbjct: 903  IPFALFGALLATYLRGLTNDVYFQIGMVTLIGLAAKNAILIVEFA---VMKRKDGMSAAE 959

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
               ++        V TS+A  + V+P+A+    G +   +    +  G++ A   + F  
Sbjct: 960  AALEAARLRFRPIVMTSLAFILGVVPLAISTGAGSASRHAIGTGVIGGMLAATFLATFFI 1019

Query: 817  APILLFIYDWRAKN 830
                  I   + K 
Sbjct: 1020 PMFYRLIAWKQPKP 1033


>gi|209885374|ref|YP_002289231.1| protein-export membrane protein SecF [Oligotropha carboxidovorans
           OM5]
 gi|209873570|gb|ACI93366.1| protein-export membrane protein SecF [Oligotropha carboxidovorans
           OM5]
          Length = 340

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 115/296 (38%), Positives = 186/296 (62%), Gaps = 6/296 (2%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRS 596
               FM  R +   IS + SI +I L FTHGLN+GIDFKGG  + +     P D++ +R+
Sbjct: 37  TTFHFMNFRRFSFPISAVLSIAAITLYFTHGLNFGIDFKGGTLVEIQEKSGPADIAKLRA 96

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L +L +GD+  Q F G  N L+R+  QPG   AQ   ++ V+  +         +  E+
Sbjct: 97  DLGNLGLGDVQLQQFGGPSNVLIRIAEQPGGDAAQQEAVQKVRATL---GDGVEYRRVEV 153

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++S EL+  G +G++++   +LIY+W RF+W FALGA+   + DI  T+GF ++  I
Sbjct: 154 VGPRVSGELLAYGTLGLMLAICGILIYLWFRFEWQFALGAMVANVHDIVLTIGFMSITQI 213

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           +F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y   +   DL+++SIN TL RS+ T 
Sbjct: 214 DFDLTSIAALLTILGYSLNDTVVIYDRIRELLRRY-KKMPMEDLLNQSINSTLSRSIITH 272

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +   +++L + ++GG  I SF   M FG ++V   +SIFIAAP+L+++     +  
Sbjct: 273 VTVTLALLALFLFGGKAIHSFTATMMFGVVLVGTYTSIFIAAPMLIYLGVGTHRKG 328


>gi|104780223|ref|YP_606721.1| preprotein translocase subunit SecF [Pseudomonas entomophila L48]
 gi|95109210|emb|CAK13907.1| preprotein translocase membrane subunit SecF [Pseudomonas
           entomophila L48]
          Length = 296

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/281 (32%), Positives = 158/281 (56%), Gaps = 5/281 (1%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           M  R     I++L ++ ++   +  GLN+G+DF GG  + +   RP DL  VR+ L S  
Sbjct: 1   MGVRNVAFAITLLLTVLALFSWWHKGLNFGLDFTGGTLIELTYERPADLEKVRTELVSSG 60

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             +   Q+F    + LVR+         +                 +TI+  E VGP++ 
Sbjct: 61  FHEAVVQSFGATTDLLVRMPGDDPLLGNKVAEALQ----KVGGDNPATIKRVEFVGPQVG 116

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  TLG  + F I F+LT 
Sbjct: 117 EELRDQGGLGMLLALGGILIYLAFRFQWKFAVGAIISLIHDVVVTLGILSFFQITFDLTV 176

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +AAVL +IGYS+ND +VV+DR+R+N ++     S  + I+ S  +TL R+V TS++  ++
Sbjct: 177 LAAVLAIIGYSLNDTIVVFDRVRENFRVLRK-ASLIENINISTTQTLLRTVATSVSTLLA 235

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  +  +GG  +  F++ +  G++    SSI+IA  +L+++
Sbjct: 236 IAALLFFGGDNLFGFSLALFIGVMAGTYSSIYIANVVLIWL 276


>gi|323979015|gb|EGB74093.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli TW10509]
          Length = 1034

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G+L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLVAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|78048249|ref|YP_364424.1| preprotein translocase subunit SecD [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78036679|emb|CAJ24370.1| preprotein translocase subunit SecD [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 614

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 141/520 (27%), Positives = 250/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  ++VD+   +   L  +++++R+ L+   I
Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I ++  +    +     +               +  L    + + I++
Sbjct: 163 PYRSVERRADNSIQVNLGEGANADAARVTLAK------------AQPTLTYDVSGQNIAV 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L
Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N+      G                  L+  +  ++G  +  A+ 
Sbjct: 271 IGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
           + D      V     +  G R F                    T   +       +  + 
Sbjct: 331 STDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A   GK   +       A  LA +L++GSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610



 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +        G  + V+    +    +    E   +              +    +Q  
Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTT 409

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         K   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F       L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++L    +  +  I     +  G  +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 529 ELRL---GVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I ++  + + IY  R K   +
Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612



 Score = 44.7 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 34/123 (27%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W   L  ++  +  L ALPN   +    +                          
Sbjct: 2   LEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQ-------------------------- 35

Query: 61  DEDDFVNGFLQMYSDELRSFLKKE----GIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                         D LRS +  E    GI   ++ +  + + +     + +    D + 
Sbjct: 36  ----ITASRGAQLDDALRSRIDGELKSAGITQKAITKEGDSLMVRLPSLQAQTRANDVLR 91

Query: 117 LFL 119
             L
Sbjct: 92  QQL 94


>gi|218555830|ref|YP_002388743.1| multidrug efflux system protein [Escherichia coli IAI1]
 gi|218362598|emb|CAR00223.1| multidrug efflux system protein [Escherichia coli IAI1]
          Length = 1034

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLVYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|325919629|ref|ZP_08181638.1| protein-export membrane protein SecD [Xanthomonas gardneri ATCC
           19865]
 gi|325549877|gb|EGD20722.1| protein-export membrane protein SecD [Xanthomonas gardneri ATCC
           19865]
          Length = 622

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 142/520 (27%), Positives = 251/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  ++VD+   +   L  +++++R+ L+   I
Sbjct: 111 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDGRI 170

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I +S ++    +     +               +  L    + + I++
Sbjct: 171 AYRSVERRGDNSIQVSLSEGASADAARTALAK------------AQPTLTYDVSGQNIAV 218

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L
Sbjct: 219 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 278

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N++     G                  L+  +  ++G  +  A+ 
Sbjct: 279 IGATASLEFRAVVEGNAEDAVRSGTIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASV 338

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
           + D      V     +  G R                      T   +       +  + 
Sbjct: 339 SNDQNGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 398

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A   GK   +       A  LA +L++GSL   ++ VEE  +G  LG++++ 
Sbjct: 399 EALSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 458

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   V  ++F  + Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 459 RGVTAVVFSFVFTLVFFTIYYRMFGAITSAALLFNLLIVIAVMSLFGATMTLPGFAGLAL 518

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 519 SVGLSVDANVLINERIREELRLGVPPKSAIVAGYEKAGGTILDANLTGLIVGVALYAFGT 578

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 579 GPLKGFALTMIIGIFASMFTAITVSRALAVLIYGSRKKLK 618



 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 94/254 (37%), Gaps = 4/254 (1%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V+    +    +    E   +              +    +Q               
Sbjct: 371 LMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLEKTEAENLAKL 430

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K   +          ++GP +  E + +G+  V+ S +  L++  I ++  F       
Sbjct: 431 LKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVFFTIYYRM-FGAITSAA 489

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+ ++L    +  + 
Sbjct: 490 LLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRL---GVPPKS 546

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            I     +  G  +  ++   I  + +  +G   +  FA+ M  GI  +  ++I ++  +
Sbjct: 547 AIVAGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRAL 606

Query: 820 LLFIYDWRAKNARI 833
            + IY  R K   +
Sbjct: 607 AVLIYGSRKKLKSV 620


>gi|293412635|ref|ZP_06655358.1| hypothetical protein ECEG_02652 [Escherichia coli B354]
 gi|331664875|ref|ZP_08365780.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           TA143]
 gi|291469406|gb|EFF11897.1| hypothetical protein ECEG_02652 [Escherichia coli B354]
 gi|331058123|gb|EGI30105.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           TA143]
          Length = 1034

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G+L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|188991192|ref|YP_001903202.1| preprotein translocase subunit SecD [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732952|emb|CAP51148.1| Protein-export membrane protein subunit [Xanthomonas campestris pv.
           campestris]
          Length = 622

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 144/520 (27%), Positives = 252/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  ++VD+   +   L+ +++++R+ L+   I
Sbjct: 111 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRI 170

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I +S  +    +     +               +  L    + + IS+
Sbjct: 171 AYRSVERRGDNSIQVSLGEGASADAARTALAK------------SQPTLTYDVSGQTISV 218

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L
Sbjct: 219 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 278

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N++     G              G   L+  +  ++G  +  A+ 
Sbjct: 279 IGATASLEFRAVVEGNAEDAVRSGSIPPEAKVYRVRDTGAPVLLNKRALVTGDQMVSASV 338

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
           + D      V     +  G R                      T   +       +  + 
Sbjct: 339 STDQNGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 398

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A   GK   +       A  LA +L++GSL   ++ VEE  +G  LG++++ 
Sbjct: 399 EALSPTRIAGVFGKNFQTTGLEKVEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 458

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 459 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 518

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 519 SVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 578

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G +RGFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 579 GPLRGFALTMMIGIFASMFTAITVSRALAVLIYGRRKKLK 618



 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 94/254 (37%), Gaps = 4/254 (1%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V+    +    +    E   +              +    +Q               
Sbjct: 371 LMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLEKVEAENLAKL 430

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K   +          ++GP +  E + +G+  V+ S +  L++  I ++  F       
Sbjct: 431 LKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRV-FGAITSVA 489

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+ ++L    +  + 
Sbjct: 490 LLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRL---GVPAKS 546

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            I     +  G  +  ++   I  + +  +G   +  FA+ M  GI  +  ++I ++  +
Sbjct: 547 AIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLRGFALTMMIGIFASMFTAITVSRAL 606

Query: 820 LLFIYDWRAKNARI 833
            + IY  R K   +
Sbjct: 607 AVLIYGRRKKLKSV 620


>gi|330447977|ref|ZP_08311625.1| #NAME? [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492168|dbj|GAA06122.1| #NAME? [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 577

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 161/515 (31%), Positives = 263/515 (51%), Gaps = 34/515 (6%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           L  ++    P  +       I LGLDLRGG   +L+VD         Q  SD+LR   +K
Sbjct: 79  LTLALEPAAPMWLQDMGFEPIKLGLDLRGGVQFLLDVDVKQVYKNHAQQLSDDLRVDFRK 138

Query: 84  EGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           + I       +  +++ +          I   +        +              +   
Sbjct: 139 QEIRGGRAELKGNDEVIVRLPSEEANSKIRQFIREQYPQWQA-----------TNGSGDN 187

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + + L +     + +  ++Q+++ +R RI+++GI+E+++QR G +RI I+LPG QDP+  
Sbjct: 188 LVLALREKEKTDLRNLTVQQNLQTMRSRIEELGITEASVQRQGENRIRIELPGVQDPAAA 247

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           + ++G TA ++F+ V               L D +GN   V  K  + G H+  A A+F 
Sbjct: 248 KNVIGATASLAFYAVKE-----EGTGSTMILPDKNGNPVRVSRKPVLGGDHIVDARASFG 302

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQ 310
                P V+I+ D  G +   + +R N+GKP+A         A                Q
Sbjct: 303 ENGT-PEVNITLDSAGGKMMSDFSRMNVGKPMATSYSEYSRNAKGETVQTNKIISVATIQ 361

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                + +I+G  ++E A  LA +LRAGSL   + IVEER +G  LG+++I  G  A+  
Sbjct: 362 TQLGSRFRITGAGSLEDAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALAL 421

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVD 429
           G+ + +LFM V Y + G VA+ ++  N+I+   LL+L+  A LTLP IAG+VL +G+AVD
Sbjct: 422 GMGVTLLFMAVWYRRLGWVANVALICNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVD 481

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +N+L+ ERIR+  R+ +S   ++D GFS A+ TIFD+N T +I  VVL+  G G ++GFA
Sbjct: 482 TNVLIFERIRDMIREGRSFAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFA 541

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +T+GL +L SMFT I   RA++  +      + + 
Sbjct: 542 LTLGLGLLTSMFTGIFASRAIINLVWGRDSRRDVR 576



 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 96/260 (36%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       ++ V        S    N +   +      +    +  L       G    +
Sbjct: 318 GKMMSDFSRMNVGKPMATSYSEYSRNAKGETVQTNKIISVATIQTQLGSRFRITGAGSLE 377

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I+ G   + +     L+++ + ++  
Sbjct: 378 DAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALALGMGVTLLFMAVWYR-R 436

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R+R  ++ 
Sbjct: 437 LGWVANVALICNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDMIRE 496

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID+  +   G     +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 497 ---GRSFAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 553

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  I+  ++   ++ 
Sbjct: 554 TGIFASRAIINLVWGRDSRR 573


>gi|238751036|ref|ZP_04612532.1| Acriflavine resistance protein B [Yersinia rohdei ATCC 43380]
 gi|238710726|gb|EEQ02948.1| Acriflavine resistance protein B [Yersinia rohdei ATCC 43380]
          Length = 1050

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGALAIM-----KLPIAQYPTIAPPA-------------ISISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMLQEDIADYVGSNVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNFGLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQIMLKVNTDGSQVRLKDVAIVQLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV IV+++ +   +  L+   ++ + ++ T A+LS LG ++   ++
Sbjct: 336 SINEVVKTLIEAIILVFIVMYLFLQNFRATLIPTIAVPVVLLGTFAILSALGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGSTGAIYRQFSVTIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + V    +     +  L         + +G     V
Sbjct: 516 NRMFEKSTDHYTDSVGNILRSTGRYLVIYLAIVIGMGVLFLRLPTSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L  +    +  +       F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RPGDQNKVPAIVGRASAAFSKIKDGLVYA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVQLGAENYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + I +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLIEAIILVFIVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSALGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F++ +   +V++   ++ +   +
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSVTIVSAMVLSVLVALILTPAL 492



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +      +  L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMDMMQELVSKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + VLP+ V    G     +    +  G+V A  
Sbjct: 958  G--LVESTLEAVRMRLRPILMTSLAFILGVLPLVVSSGAGSGAQNAVGTGVMGGMVTATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|21243570|ref|NP_643152.1| multidrug efflux transporter [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109138|gb|AAM37688.1| multidrug efflux transporter [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 1047

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/689 (9%), Positives = 175/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPAIAPPA-------------VAITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +K       +   S       ITL+F +    +    +V  
Sbjct: 50  PGASAQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +  T      + +     +       + S  +     + I   
Sbjct: 110 KLSLATPLLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     T   +       N        G      + 
Sbjct: 170 EGVGDTTLFGSQ-YAMRVWMDPNKLSNFSLTPVDVRNAIQAQNAQISAGQLGALPALANQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        I       
Sbjct: 229 QLNATITAQTRL-------------KTAEQFENILLRTQSDGSQVRLRDVARIELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T+               P                
Sbjct: 276 NTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++
Sbjct: 336 SIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMGEEQLSPKDATRKSMDQISGALIGVALVLAAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------I 523
           + FF G      R F+IT+  ++ +S+  A+ +  A+   +++                 
Sbjct: 456 MAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVHKGHGLATTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     +   + +  + L ++     +         + +G + + V
Sbjct: 516 NRLFDRGNTGYQGVVRHMLGKGWRYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +     L+ ++   +  Q       F V      G           ++    
Sbjct: 576 QLPPGATNARTSDVLKQVEHHFLVDQKESVAGVFAVTGFSFAGSGQNVGFAFVKLRPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 ++ +           +    +  
Sbjct: 636 RTGKGQSVTDVAAKAGAFFSGIRDAKVFA 664



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 89/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++   R ++   ++  +  
Sbjct: 258 SQVRLRDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   + A++  IG  V+D +VV + +     +    +S +D   KS+
Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMGEEQLSPKDATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  +  ++      +PMA + GS       F+I +   + ++   ++ +   +   
Sbjct: 436 DQISGALIGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 78/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +   A   V  +   +         +   N       L         
Sbjct: 776  PYRMNPQDIDHWFVRNSAGTMVPFNAFATASWQSGSPRLERYNSVPSMEILGMALPGAAS 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            S    +++E    K+   +          +  +      + G++  +   I  L    + 
Sbjct: 836  SGEAMQIVEAAAAKLPPGIGF----EWTGLSRQEKASSGQTGLLYSVSILIVFLCLAALY 891

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L +  TL    L     ++     +LT IG +  + +++ +  R+ 
Sbjct: 892  ESWAIPFSVILVVPLGVFGTLLAAMLTWKMNDVYFQVGLLTTIGLASKNAILIVEFARE- 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
              L+    S      ++    L   + TS+A  + V+P+ +    G     +    +  G
Sbjct: 951  --LHEGGKSLVAAALEAARMRLRPILMTSLAFILGVVPLVLTSGAGAGAQHALGTAVIGG 1008

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            +V     +IF      + +     + 
Sbjct: 1009 MVSGTVLAIFFVPLFFVLVCGLFQRR 1034


>gi|331669204|ref|ZP_08370052.1| multidrug efflux protein [Escherichia coli TA271]
 gi|331064398|gb|EGI36309.1| multidrug efflux protein [Escherichia coli TA271]
          Length = 629

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/627 (11%), Positives = 163/627 (25%), Gaps = 51/627 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+  W V   +L        L        ++ +G     V
Sbjct: 516 NQMFNRNAERYEKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQN 610
                         +E ++    + + 
Sbjct: 576 QLPSGSTQQQTLKVVEQIEKYYFTHEK 602



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502


>gi|158522454|ref|YP_001530324.1| preprotein translocase subunit SecF [Desulfococcus oleovorans Hxd3]
 gi|158511280|gb|ABW68247.1| protein-export membrane protein SecF [Desulfococcus oleovorans
           Hxd3]
          Length = 347

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/348 (29%), Positives = 161/348 (46%), Gaps = 52/348 (14%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRP 588
            F +I D   I F+  + +    S    + +I  L  HG   YGIDF GG  + V    P
Sbjct: 1   MFEIIKDGTTIDFVGKQKYAFVFSAAMILITIISLVAHGGPRYGIDFAGGTLVQVKFASP 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFD----GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           V  + + S+L+++ I   + Q +     G+  +LV                ++       
Sbjct: 61  VSTNTIASSLKTVGIDVSTVQAYGHPKEGDCQYLVNSAMDMTGISGDDFEDKVKTALAGA 120

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--------------- 689
               + I   E+VGP + + L  K ++ +  S + + IYI  RF+               
Sbjct: 121 TGQTAEITRVEMVGPTVGKSLRGKALMALFFSLLFINIYISGRFEMKWVVAGVVAGGLIL 180

Query: 690 -------------------------------WYFALGAITTLILDITKTLGFFALFGIEF 718
                                            +A+GAI  LI D+T T+G F++ G EF
Sbjct: 181 AVWLFSMLGISIPYLILVALVVSLVLFWVLELKYAMGAIVALIHDVTITVGIFSITGKEF 240

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           +L  +AA+LT+IGYS+ND ++V+DR+R+N+K  +   S  D+I+ SINETL R++ TS  
Sbjct: 241 SLPIIAALLTIIGYSLNDTIIVFDRIRENLKKLSRK-SLPDIINTSINETLSRTLLTSGT 299

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             I V  + V+GG++I  FA  M  GI V   SSIF+A+PILL     
Sbjct: 300 TLIVVAALFVFGGTIIHDFAFAMLVGIGVGTYSSIFVASPILLLWKKK 347


>gi|53805141|ref|YP_113195.1| preprotein translocase subunit SecF [Methylococcus capsulatus str.
           Bath]
 gi|53758902|gb|AAU93193.1| protein-export membrane protein SecF [Methylococcus capsulatus str.
           Bath]
          Length = 309

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 4/297 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS++  I +I  L   GLN GIDF GGI + V   +P D
Sbjct: 1   MEFFKIKRDIPFMRYGRLTTTISLVTFILAILALGFKGLNLGIDFTGGILMEVRYAQPAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  LE  +I + + QNF   ++ L+RL  +      Q+   + +   +      + 
Sbjct: 61  LEAIRKTLEEQRIAEAAVQNFGTSRDVLIRLPLREDTGARQS---DQIFSALKAQDGTAE 117

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +E+   G + +++ A  ++ Y+ +RF W FA+ A+   + DI   LG 
Sbjct: 118 LKRVEFVGPQVGKEMYESGGLALMLVAAGIMAYLAMRFAWRFAVAAMIANMHDIVIILGM 177

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF L+ +A VL ++GYSVN+ VVV+DR+R+N +      +  D+ID +I  T+ 
Sbjct: 178 FAFFEWEFTLSVLAGVLAILGYSVNESVVVFDRVRENFRKMRK-AAVTDVIDNAITATMS 236

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           R++ T     + VL M  +GG  + +FA+ +  GIV    SS+ +A P++L +   R
Sbjct: 237 RTIITHSMTQLMVLAMFFFGGDALHNFALALTIGIVFGIYSSVLVACPVVLALGVSR 293


>gi|118475690|ref|YP_891903.1| preprotein translocase subunit SecD [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414916|gb|ABK83336.1| protein-export membrane protein SecD [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 529

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 176/541 (32%), Positives = 297/541 (54%), Gaps = 35/541 (6%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           + ++++ +    GL  ++P+FL               +ISLGLDL+GG H++L V  D+ 
Sbjct: 8   YRLVIFILALIFGLGFSMPSFLQSEKG---------YKISLGLDLQGGLHMLLGVQTDEA 58

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +   ++  +  +R F  K  I V +++   + + L+  DS   + I + +          
Sbjct: 59  ITSKIKSIASSIRYFTNKNDILVENLKTDTDTVHLTILDSDEAKKIDEMLK--------- 109

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                 K L +        I L+         +A++Q++E IR R+DQ G++E T+ + G
Sbjct: 110 ----GIKGLDIKKDGLNYRISLTAAEKIDTAKYAVDQAVETIRNRLDQFGLAEPTVAKQG 165

Query: 186 SHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLP--------NNSKKGFMFGVRFLR 234
            ++IL++LPG +   D  R + L+  +A +    +              +   +G     
Sbjct: 166 ENQILVELPGIKTAADEQRAKDLIAKSAHLQLMALDEKRQDQANKMTEAEATAYGDVLYP 225

Query: 235 D--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
           D  +   +YL++D   + G  L  A   FD +T+ P++  + +  GAR F + T  N+GK
Sbjct: 226 DVKNPKFKYLIKDIPVLDGNMLVDARVAFDNQTNSPIISFTLNAEGARIFGDFTGSNVGK 285

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            LA+VLDG+V +APVIN+ I  G  QISG F++E A  +A  LR+G+L   +N++E+R++
Sbjct: 286 RLAIVLDGKVYSAPVINERIGGGSGQISGGFSVEEAHDVAIALRSGALLAPVNMLEKRSI 345

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG  SI +   A+  G +L+VLFM+++YG  G++A+ ++ +N++L +A+++L GATL
Sbjct: 346 GPSLGQQSIDQSMVALAGGAILVVLFMVLIYGLAGVLANIALVVNILLLVAVMALFGATL 405

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP +AGI+L IG+AVD+N+++NERIRE  +  QSV  S++ G+  A S I DSN+T LI
Sbjct: 406 TLPGMAGILLTIGMAVDANVIINERIRELLKAGQSVHVSIEKGYKNAMSAIIDSNLTTLI 465

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +  L+ +G G V+GFA+TM + IL SM TAI     M  F+ +  +     +       
Sbjct: 466 TSAALYAYGTGPVKGFAVTMSIGILASMLTAILGTHGMFEFLGKKIENNKNSVLWFGYKI 525

Query: 533 L 533
            
Sbjct: 526 R 526



 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 36/182 (19%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            +     +GP + ++ I + +V +   AI +++++ + +     + A   L+++I   + 
Sbjct: 338 NMLEKRSIGPSLGQQSIDQSMVALAGGAILVVLFMVLIYGL-AGVLANIALVVNILLLVA 396

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             ALFG    L  +A +L  IG +V+  V++ +R+R+ +K      S    I+K     +
Sbjct: 397 VMALFGATLTLPGMAGILLTIGMAVDANVIINERIRELLKA---GQSVHVSIEKGYKNAM 453

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              + +++   I+   +  +G   +  FA+ M+ GI+ +  ++I     +  F+      
Sbjct: 454 SAIIDSNLTTLITSAALYAYGTGPVKGFAVTMSIGILASMLTAILGTHGMFEFLGKKIEN 513

Query: 830 NA 831
           N 
Sbjct: 514 NK 515


>gi|157373294|ref|YP_001471894.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sediminis HAW-EB3]
 gi|157315668|gb|ABV34766.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sediminis HAW-EB3]
          Length = 1050

 Score =  196 bits (498), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/687 (10%), Positives = 180/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  L        + ++PS  P +              V     
Sbjct: 8   RPIFAWVIAIIVMLAGVLSIL-----GLPVSQYPSIAPPSV---------EIRAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        +        ITL+F      +    +V   LQ 
Sbjct: 54  AKTMEDSVTQVIEQRMTGIDHLRYISSTSDSFGNATITLTFNAEADPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + +   +         +++             + +  +     D +       
Sbjct: 114 AMPLLPQEVQAQGVNVAKSSAGFLMVVGFVSQDGSLDKNDIADYVGSNVQDPMSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L Q   T+  +       N        G            
Sbjct: 174 TIQLFGAQ-YAMRIWLDPLKLTQYNLTSQDIIASIREQNAQVSAGQLGGAPSVSGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +    + F      +           
Sbjct: 233 TVSAQSRL-------------QTAEQFKKIIIKADSTGAKVFLEDVARVELGAENYDVES 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T E      A L+         +           S   
Sbjct: 280 YYNGKPAAGIGIQLATGANALATAEGVRAKIAELQPFFPQGLEVVYPYDTTPFVEKSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T A+LS  G ++   ++  +V
Sbjct: 340 VVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILSAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPIEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G      R F+IT+  ++ +S+  AI +  A+   +          +        +   
Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVMVAIILTPALCATMLKPIAKGHHAVDTGFFGWFNRKF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +A    RA    +    +        +         + +G +    +   
Sbjct: 520 DALTSRYEASVAAMIKRAGRTMMVYLAITVAVGWIFMRMPTAFLPDEDQGILFTQAILPV 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L  +    +  +  + +  F V      G+          +K       P
Sbjct: 580 NSTQEETKKVLSDVSDFYLEQEGDNVKSVFSVSGFSFAGNGQNMGIAFVGLKDWSERTDP 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
              +Q+       +  ++    +   +
Sbjct: 640 GQDVQSVAGRAMGMFMQMKEAFVFAFV 666



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 80/240 (33%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V       +  D+           +        +++A    +     ++ 
Sbjct: 255 STGAKVFLEDVARVELGAENYDVESYYNGKPAAGIGIQLATGANALATAEGVRAKIAELQ 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  ++ + + + + +++  + +   L     + +
Sbjct: 315 PFFPQGLEVVYPYDTTPFVEKSIEGVVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    +  G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAILSAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPIEATK 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F+I +   + ++   +I +   +
Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVMVAIILTPAL 492



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 75/246 (30%), Gaps = 13/246 (5%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 +      +       V  S   +         +   N     N    +       
Sbjct: 777  YRMQPEDIDSWYVRNTKGDMVPFSAFATGSWEYGSPRLERFNGLPAMNIQGGVAPGFSTG 836

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + +MVK+            + E         ++        +S + + + +   +
Sbjct: 837  EAMNIIEDMVKQLPPGFGVEWNGLSYEERLSGNQAPMLY------ALSIVVVFLVLAALY 890

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      I  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 891  ESWSVPFSVILVVPLGIIGALIAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEY 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 951  ---YEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGG 1007

Query: 805  IVVAAS 810
            ++ +  
Sbjct: 1008 MMSSTF 1013


>gi|294664103|ref|ZP_06729498.1| protein export protein SecD [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606124|gb|EFF49380.1| protein export protein SecD [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 614

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 142/520 (27%), Positives = 250/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  ++VD+   +   L  +++++R+ L+   I
Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I +S  +    +     +               +  L    + + I++
Sbjct: 163 PYRSVERRADNSIQVSLGEGANADAARVALAK------------AQPTLTYDVSGQNIAV 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L
Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N+      G                  L+  +  ++G  +  A+ 
Sbjct: 271 IGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
           + D      V     +  G R F                    T   +       +  + 
Sbjct: 331 STDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A   GK   +       A  LA +L++GSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 571 GPLKGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610



 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +        G  + V+    +    +    E   +              +    +Q  
Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTT 409

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         K   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F       L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++L    +  +  I     +  G  +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 529 ELRL---GVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I ++  + + IY  R K   +
Sbjct: 586 ASMFTAITVSRALAVLIYGSRKKLKSV 612



 Score = 43.5 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 34/123 (27%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W   L  ++  +  L ALPN   +    +                          
Sbjct: 2   LEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQ-------------------------- 35

Query: 61  DEDDFVNGFLQMYSDELRSFLKKE----GIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                         D LRS +  E    GI   ++ +  + + +     + +    D + 
Sbjct: 36  ----ITASRGAQLDDALRSRIDGELKSAGITPKAITKEGDSLMVRLPSLQAQTRANDVLR 91

Query: 117 LFL 119
             L
Sbjct: 92  QQL 94


>gi|292898735|ref|YP_003538104.1| multidrug efflux pump [Erwinia amylovora ATCC 49946]
 gi|291198583|emb|CBJ45691.1| multidrug efflux pump [Erwinia amylovora ATCC 49946]
          Length = 1048

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/684 (9%), Positives = 176/684 (25%), Gaps = 43/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L     +  ++++P+  P                     +
Sbjct: 8   RPIFAWVIAIIVMLAGTLSIL-----KLPIEQYPNVAPPAI---------EITATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        S       ++TL+F      +    +V   LQ 
Sbjct: 54  AKTLQDSVTQVIEQNMNGIDGLMYMGSSSDSSGTLQLTLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D       + S  +     D +       
Sbjct: 114 ATPLLPQEVQQQGISVQKSSSSFLMVAGFINDSGTMTQNDISDYVGSNIKDPLSRVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   +       N        G            
Sbjct: 174 DTQLFGAQ-YAMRIWMDPHKLNNYQLTPVDVISAINTQNAQVAAGQLGGSPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        R       +I           
Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNADGSRVRLSDVAHIELGGENYEVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          L          +           S + 
Sbjct: 280 RYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFFPSGLKVVYPYDTTPFVKISINE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A++S  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKSMDQIQGALVGIALVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++++S+  A+ +  A+   +                   +   
Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVIVALILTPALCATMLKPINKGDHGKTTGFFGWFNRLF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + V   ++    +   L         + +G          
Sbjct: 520 DKSTHHYTDSVGHIVRSTGRYLVIYLLIVVGMAFLFLRLPTSFLPEEDQGVFLTMAQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +    ++ +  +    F V      G           +K        
Sbjct: 580 GATQERTQKVLDQVTDYYLNKEKTNVNSVFTVNGFGFAGRGQNTGLAFVSLKPWDERSGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671
            + +             +    ++
Sbjct: 640 ENKVPAITGRAMGALSAIKDAMVI 663



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 89/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       +  ++  +      + L        +++     ++    K+    
Sbjct: 258 SRVRLSDVAHIELGGENYEVIARYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 436 DQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALILTPAL 492



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 7/193 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G   A     E +         L T    +  G      L       +  IS I + + +
Sbjct: 828  GQPAAGKSSGEAMNLMQELASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L F  L G+  ++  V  +LT IG S  + +++ + 
Sbjct: 888  AALYESWSIPFAVMLVVPLGVIGALIFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEF 947

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  M+         +   +++   L   + TS+A  + VLP+A+    G     +    
Sbjct: 948  AKDLMEKEGKG--LVEATLEAVRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTG 1005

Query: 801  MAFGIVVAASSSI 813
            +  G+V A   +I
Sbjct: 1006 VMGGMVTATVLAI 1018


>gi|15801884|ref|NP_287904.1| putative efflux pump [Escherichia coli O157:H7 EDL933]
 gi|15831118|ref|NP_309891.1| multidrug-efflux transport protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|217329188|ref|ZP_03445268.1| multidrug efflux transport protein EefB [Escherichia coli O157:H7
           str. TW14588]
 gi|12515493|gb|AAG56520.1|AE005377_13 putative efflux pump [Escherichia coli O157:H7 str. EDL933]
 gi|13361329|dbj|BAB35287.1| putative multidrug-efflux transport protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|217317627|gb|EEC26055.1| multidrug efflux transport protein EefB [Escherichia coli O157:H7
           str. TW14588]
 gi|320189954|gb|EFW64606.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. EC1212]
 gi|326343285|gb|EGD67052.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. 1044]
          Length = 1027

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 187/683 (27%), Gaps = 41/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P   I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +     V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQ--VQNKIQ 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 112 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 172 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +  +          +          
Sbjct: 231 ATVRAQSRL-------------QTVDQFKNIIVKSQSDSAVVRIKDVARVEMGSEDYTAI 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 278 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 338 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 397

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +      K      + +         +    +      + + F
Sbjct: 398 VLAIGLLVDDAIVVVENVERIMRDKGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 457

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 458 FGGSTGVIYRQFSITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFDRFYRRT 517

Query: 537 CIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLS 592
               Q       R     + +   +     L    L           ++ V    P   +
Sbjct: 518 EDKYQRGVIYVLRRAARTMGLYLVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 577

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 578 AARTAEVNRQIVDWFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 637

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 638 AQAIALRATKELGTIRDATVFAM 660



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 259 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 318

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 319 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 378

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 379 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDKGLPAREATEKSMGE 436

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 437 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 487


>gi|238783874|ref|ZP_04627892.1| Acriflavine resistance protein B [Yersinia bercovieri ATCC 43970]
 gi|238715261|gb|EEQ07255.1| Acriflavine resistance protein B [Yersinia bercovieri ATCC 43970]
          Length = 1039

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/556 (12%), Positives = 153/556 (27%), Gaps = 46/556 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P               + +    
Sbjct: 8   RPIFAWVLAIIMCLTGALAI-----STLPIEQYPNLAPPT-------------VRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + ++++             + +  +     D +   
Sbjct: 110 QLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT  +       N+       G     D+ 
Sbjct: 170 EGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      I       
Sbjct: 229 ALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T        A L           +          
Sbjct: 276 DYLSRFNGQAASGMSVKLASGANELQTDALVKARLAELAPFFPHGLEAKIAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++
Sbjct: 336 SIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSVFGFSINTLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IGL VD  I+V E +    + +      +      +    +    +      + 
Sbjct: 396 FAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+         +K I          
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIKPGHHHGKRG 510

Query: 534 IPDCIAIQFMRARFWG 549
                   F R     
Sbjct: 511 FFGWFNRMFDRNAHRY 526



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 53/482 (10%), Positives = 141/482 (29%), Gaps = 25/482 (5%)

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                   + G + I    I  Y                 +   L      +   S+ G+
Sbjct: 13  WVLAIIMCLTGALAISTLPIEQYPNLAPPTVRISASYPGASAQTLENTVTQVIEQSMTGL 72

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              + ++  S+   +  I    +   +   ++    ++  S I           V +   
Sbjct: 73  DNLLYMSSQSSNSGSASITLTFQAGTNPNEAMQQVQNQLQSAIKKLPQDVQQQGVSVSKS 132

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G   +   A       +     A  +   +   + R + + SID         I      
Sbjct: 133 GDNTLMMVAFVSTDGSMDKQDIADYVASNLQDPLSRIEGVGSIDAFGSQYAMRIWLDPNK 192

Query: 541 ----------------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                                   G                 +  +     +   ++ + 
Sbjct: 193 LNNYQLTTQDIVTAIQSQNSQIAVGQLGGTPSVDNQALNATINAQSQLQTPEQFREITLR 252

Query: 585 ANRP---VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            N+    V L  V       +  D   +      + +        + +    +++    +
Sbjct: 253 VNQDGSLVTLGDVAKIEMGAEKYDYLSRFNGQAASGMSVKLASGANELQTDALVKARLAE 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           +    P               +  I+  +  ++ + + + + +++  + +   L     +
Sbjct: 313 LAPFFPHGLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAV 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T    ++FG   N   + A++  IG  V+D +VV + +     +    +  R+ 
Sbjct: 373 PVVLLGTFAILSVFGFSINTLTLFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             KS+ +  G  V  ++      +PMA +GG+       F+I +   +V++   ++ +  
Sbjct: 431 TRKSMGQIQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTP 490

Query: 818 PI 819
            +
Sbjct: 491 AL 492



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 66/180 (36%), Gaps = 8/180 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 853  FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+E ++     +LT+IG S  + +++ +   +   L        +   ++  + L
Sbjct: 913  ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRQRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A    VLPMAV    G     +    +  G++ A   +IF      + +   
Sbjct: 970  RPILMTSLAFIFGVLPMAVSQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 1029


>gi|153837116|ref|ZP_01989783.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AQ3810]
 gi|149749533|gb|EDM60279.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AQ3810]
          Length = 612

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 156/513 (30%), Positives = 272/513 (53%), Gaps = 27/513 (5%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            F   S+   + + M  + I LGLDLRGG   +L VD +           DE+++ L+ +
Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALIDEIKANLRDQ 172

Query: 85  GIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
            +    +R +  N+IT+    +   E    +V  FL+              +  ++ +  
Sbjct: 173 RVRGVQVRAESGNRITV----NSDSEQALSEVNKFLRQ--------NYPGWISKSSSRGF 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  S+ NI +  S  ++Q+++I+R RI+++GI+E+ +QR G   I I+LPG QDP++ +
Sbjct: 221 VLEPSEQNIQEFQSSTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++V    + +        L+D+DG   ++  +  ++G H+  A A  D 
Sbjct: 281 NVIGATASLAFYEVKD--ASQAHSSQDLVLQDNDGRTVILAKRPVLTGEHIVNARAGVDK 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+       V      + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +++ ERI+++ R+ +S   ++D+GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMFT +   RAM+  I      + + 
Sbjct: 579 LGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 611



 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L  ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SF   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+   A+ 
Sbjct: 586 SMFTGVFASRAMINLIWGRDARR 608


>gi|91223994|ref|ZP_01259257.1| protein export protein SecD [Vibrio alginolyticus 12G01]
 gi|91190905|gb|EAS77171.1| protein export protein SecD [Vibrio alginolyticus 12G01]
 gi|328470964|gb|EGF41875.1| preprotein translocase subunit SecD [Vibrio parahaemolyticus 10329]
          Length = 612

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 156/513 (30%), Positives = 272/513 (53%), Gaps = 27/513 (5%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            F   S+   + + M  + I LGLDLRGG   +L VD +           DE+++ L+ +
Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALIDEIKANLRDQ 172

Query: 85  GIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
            +    +R +  N+IT+    +   E    +V  FL+              +  ++ +  
Sbjct: 173 RVRGVQVRAESGNRITV----NSDSEQALSEVNKFLRQ--------NYPGWISKSSSRGF 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  S+ NI +  S  ++Q+++I+R RI+++GI+E+ +QR G   I I+LPG QDP++ +
Sbjct: 221 VLEPSEQNIQEFQSSTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++V    + +        L+D+DG   ++  +  ++G H+  A A  D 
Sbjct: 281 NVIGATASLAFYEVKD--ASQAHSSQDLVLQDNDGRTVILAKRPVLTGEHIVNARAGVDK 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+       V      + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +++ ERI+++ R+ +S   ++D+GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMFT +   RAM+  I      + + 
Sbjct: 579 LGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 611



 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L  ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SF   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+   A+ 
Sbjct: 586 SMFTGVFASRAMINLIWGRDARR 608


>gi|330447242|ref|ZP_08310892.1| acrB RND-type permease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491433|dbj|GAA05389.1| acrB RND-type permease [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 1046

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/692 (10%), Positives = 185/692 (26%), Gaps = 52/692 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +     +  + ++PS  P               +V+  + 
Sbjct: 8   RPIFAWVIAIIVMLAGVLSII-----KLPVSQYPSIAPPT-------------VVISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S      +ITL+F      +    +V  
Sbjct: 50  PGANAKTMEDTVTQVIEQRMTGIDHLRYLSSTSDSFGNTQITLTFNAEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L ++ ++  +         +++     +       + S  I     D +   
Sbjct: 110 KLQAALPLLPMEVQQQGVKVNKASSSFLMVVGFYSEDGSMDKNDISDYISSNVADPMSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L +   T+  +       N        G        
Sbjct: 170 AGVGEITTFGAQ-YAMRIWLDPLKLTKYNLTSIDVIAAIKEQNAQISAGQLGASPSMPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +             +       
Sbjct: 229 ELNATVSAQSRL-------------QTPEEFKNIIVKSDSAGATVRLGDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T E        L+         +           
Sbjct: 276 SVQVFYNGKPASGLGIKLATGANALATAEAVKAKVEELKPFFPEGLTAVYPYDTTPFVEK 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV I++++ +   +  L+   ++ + ++ T A+LS+ G ++   ++
Sbjct: 336 SIEGVVHTLFEAVALVFIIMYLFLQNFRATLIPTIAVPVVLLGTFAVLSMAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  +   +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEEGLNAVEATRKSMDQITGALVGIALTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + F  G      R F+IT+  ++ +S+  A+ +  A+   +        +       +  
Sbjct: 456 MAFMSGSTGVIYRQFSITIVTAMSLSVLVAVILTPALCATMLKPVEHGEKKGFFGWFNRT 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +A    R+    +    L                  + +G +    +  
Sbjct: 516 FDKLTSRYEASVAAMIKRSIRVMLIFLGLTVAVGWMFNKMPTSFLPDEDQGILFSQAILP 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  ++ +    ++ +       F V      G           +K      +
Sbjct: 576 VNSTQEQTQEVMDKVSDFYLNDEKDTVASVFSVSGFSFAGSGQNMGMAFISLKDWSDRQL 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           P   +++         +++       ++ S  
Sbjct: 636 PGMDVKSVVARSMAYFQQIKN----AMVFSFA 663



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 81/268 (30%), Gaps = 13/268 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                        +       V  S   +         +   N     N    +       
Sbjct: 774  YRMKPTDLDTWYVRNNQGEMVPFSAFATGEWKYASPRLERFNATPAVNIQGGVVPGYSTG 833

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + EMVK+            + E         ++        +S + + + +   +
Sbjct: 834  QAMLDIEEMVKQLPPGFGIEWNGLSYEERLSGNQAPMLY------ALSILVVFLVLAALY 887

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      I  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 888  ESWSVPFAVILVVPLGIIGALLAMNGRGMPNDVFFQVGLLTTVGLATKNAILIVEFAKEY 947

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 948  ---YEKGAGLVEATLHAVRVRLRPIIMTSLAFGLGVVPLAISTGVGSGGKNAIGTAVLGG 1004

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++ +    IF      + +    ++  +
Sbjct: 1005 MLSSTFLGIFFIPIFFVVVERIFSRKKK 1032



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 84/240 (35%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V L  V       +   +         + L        +++A    ++   +++ 
Sbjct: 255 SAGATVRLGDVARVELGAEDYSVQVFYNGKPASGLGIKLATGANALATAEAVKAKVEELK 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  +  +   + I +++  + +   L     + +
Sbjct: 315 PFFPEGLTAVYPYDTTPFVEKSIEGVVHTLFEAVALVFIIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    ++ G   N   + A++  IG  V+D +VV + +     ++   ++  +   
Sbjct: 375 VLLGTFAVLSMAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEEGLNAVEATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V  ++      +PMA   GS       F+I +   + ++   ++ +   +
Sbjct: 433 KSMDQITGALVGIALTLSAVFVPMAFMSGSTGVIYRQFSITIVTAMSLSVLVAVILTPAL 492


>gi|254410515|ref|ZP_05024294.1| RND transporter, HAE1 family [Microcoleus chthonoplastes PCC 7420]
 gi|196182721|gb|EDX77706.1| RND transporter, HAE1 family [Microcoleus chthonoplastes PCC 7420]
          Length = 1059

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 78/572 (13%), Positives = 164/572 (28%), Gaps = 40/572 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  IG +       P   + ++P   PK              + ++ +
Sbjct: 8   KRPVFTTVCSLIILLIGAISI-----PTLPVAQYPDISPK-------------QVSVQAN 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
            +      ++      L   +    G+   +     +    I ++FA  + ++  A  V 
Sbjct: 50  YNGADAQTVENAVTTILERAINGVDGMRYMTSSSSNDGTSSINITFAPDKDQDIAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L     +  +    E    ++      +      +  S       +D +  
Sbjct: 110 NRVSLAEPQLPESVLQTGVTVNKESANFLMAFGLYSENGEYDNLFLSNYANLYLVDALKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP RL     T   +       N        G     + 
Sbjct: 170 VNGVGNVQIFGERTYAMRLWLDPLRLASRNLTAQDVVDALREQNIQVGAGRIGQPPAPEG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +     +                      I   +             +      
Sbjct: 230 QQYQIDLRAISRL-------------ETVSDFEELILATDEDGTLIKLNDVGRVELGAQN 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                   A        +     +     +      A L A   P     +         
Sbjct: 277 YGTFLRFRANEAVGLGINTVPGSNALEVADAVKAEMAKLAADFPPGMTYDIGFDTTDYVN 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S S    T     GLV++V+F+ +   +  ++   +I +++I T A + +   ++   +
Sbjct: 337 QSLSEVVFTLLKAVGLVVLVIFVFLQDWRTTIIPAITIPVSLIGTFAFVKIFDFSINSLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G+ L  G+ VD  I+V E I  + ++   +S   ++        + I  S +   +  
Sbjct: 397 LFGLTLATGMVVDDAIVVVEDITTKIQRGGIKSRQAAIISMRELVGAVIATSLVLMAVFI 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V FF G      R FA+T+  SI +S F A+++   +   I+R K   +     L   F
Sbjct: 457 PVAFFPGTTGALYRQFALTIAFSIAVSTFMALTLTPTLSGLILRQKPEATGLWGHLFDGF 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                   Q  R     +       I +   L
Sbjct: 517 NRFLEGMQQRYRRFLIILTRVKTLVIVAFIGL 548



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 76/228 (33%), Gaps = 5/228 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R  L +   G       +      +              V   + K   +  P  T    
Sbjct: 269 RVELGAQNYGTFLRFRANEAVGLGINTVPGSNALEVADAVKAEMAKLAADFPPGMTYDIG 328

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +++ L       +    + +L+       W   +    T+ + +  T  F  +F
Sbjct: 329 FDTTDYVNQSLSEVVFTLLKAVGLVVLVIFVFLQDWRTTIIPAITIPVSLIGTFAFVKIF 388

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
               N   +  +    G  V+D +VV + +    K+    I  R     S+ E +G  + 
Sbjct: 389 DFSINSLTLFGLTLATGMVVDDAIVVVEDI--TTKIQRGGIKSRQAAIISMRELVGAVIA 446

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           TS+      +P+A + G+       FA+ +AF I V+   ++ +   +
Sbjct: 447 TSLVLMAVFIPVAFFPGTTGALYRQFALTIAFSIAVSTFMALTLTPTL 494



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 79/243 (32%), Gaps = 9/243 (3%)

Query: 593  VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                 L +L     +          L R     G +       + ++        +    
Sbjct: 794  DEMIPLGNLVTVTQTTGAQTINHYNLFRSIEINGSAAQGVSSGDAIQAMEEVAAEVLPPG 853

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLG 709
                       E+   G   +I     + +++ +      +   +  +  + L I   L 
Sbjct: 854  LGYEWSGLSLEEIQSGGQATIIFGFGLVFVFLVLAAQYESYIDPIIILLAVPLAILGALM 913

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              +L G+  ++     ++ LIG +  + +++ +      +L    ++ R    ++  + L
Sbjct: 914  AQSLRGLPNDVYCQIGLVMLIGLASKNSILIVEFAN---QLRDQGMTLRKAAIEAAQQRL 970

Query: 770  GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+++    + P+ +    G     S    +  G+ +A   S+F+   + + I   
Sbjct: 971  RPILMTAISTLFGIFPLVIATGAGSGSRQSLGTAVFGGMFIATFLSLFVVPILYIVIKSG 1030

Query: 827  RAK 829
              +
Sbjct: 1031 SDR 1033



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 65/544 (11%), Positives = 147/544 (27%), Gaps = 37/544 (6%)

Query: 2    RNNPWLVILY-----SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG--GS 54
            R   +L+IL       ++  IGLL               P       +++   ++G  GS
Sbjct: 526  RYRRFLIILTRVKTLVIVAFIGLLALTVWVYDSVPSAFLPDEDQGYFMTI---VQGPEGS 582

Query: 55   HLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             L    D  + +   + +  DE+R+     G G          +  +             
Sbjct: 583  SLNYTHDVIEQIEDII-LPLDEVRATFAVGGFGFSGNTANSAIVFTTLKPWSERTDPSQS 641

Query: 112  ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
            A+ V   +QG         K+  +       I  + S       +     +    +   I
Sbjct: 642  AEAVINKVQGALF----GIKEARVFPVNPPSIPGLGSFGGFQFQLQD--RRGNFSLDSLI 695

Query: 172  DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            + +G       +    + +        P    ++    AK     +           G R
Sbjct: 696  ENMGKLLGAGNQNPQLQAVFSTYAANTPQLQIEVNRNRAKALEVDIDDIFETLQTYLGSR 755

Query: 232  FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
            ++ D          +V +       +      + +          +G       T     
Sbjct: 756  YVNDF--TLERRTYRVYVQADAQFRSNPEDINQLYVRSARDEMIPLGNLVTVTQTTGAQT 813

Query: 292  KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                 +     +                      +    +  +      P         +
Sbjct: 814  INHYNLFRSIEINGSAAQGVSSG-----------DAIQAMEEVAAEVLPPGLGYEWSGLS 862

Query: 352  VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
            +                +  + L++      Y    ++   ++ L ++  L   SL G  
Sbjct: 863  LEEIQSGGQATIIFGFGLVFVFLVLAAQYESYIDP-IIILLAVPLAILGALMAQSLRGLP 921

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
              +    G+V+ IGLA  ++IL+ E   +   +  ++  +      +    I  + I+ L
Sbjct: 922  NDVYCQIGLVMLIGLASKNSILIVEFANQLRDQGMTLRKAAIEAAQQRLRPILMTAISTL 981

Query: 472  IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
                 L      G G+ +     +   + I+ F ++ +V  + I I              
Sbjct: 982  FGIFPLVIATGAGSGSRQSLGTAVFGGMFIATFLSLFVVPILYIVIKSGSDRLFNSPGKN 1041

Query: 529  SRFF 532
             +  
Sbjct: 1042 QKTP 1045


>gi|24111845|ref|NP_706355.1| acriflavine resistance protein [Shigella flexneri 2a str. 301]
 gi|24050639|gb|AAN42062.1| acriflavine resistance protein [Shigella flexneri 2a str. 301]
          Length = 1049

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/686 (10%), Positives = 178/686 (25%), Gaps = 44/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISRFYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMTGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L +   T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        R        I           
Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENYDIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T        A +          +           S   
Sbjct: 280 EFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDIN 526
           GG      R F+IT+  ++ +S+  A+ +  A+   +            +      ++  
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGWLNRM 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    D +         + V   I+    +   +         + +G     V   
Sbjct: 520 FEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTMVQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L  +    ++ +  + E  F V      G           +K       
Sbjct: 580 AGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPG 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             + ++   +   +   ++    +  
Sbjct: 640 EENKVEAITMRATRAFSQIKDAMVFA 665



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 73/234 (31%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 791  VRAADGQMVPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMELMEQLASK 850

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +I+  + +     +   W      +  + L
Sbjct: 851  LPTGVGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLA---ALYESWSTPFSVMLVVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+  ++     +LT IG S  + +++ +  +  M          +   
Sbjct: 908  GVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LIEATL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             ++   L   + TS+A  + V+P+ +    G     +    +  G+V A   +I
Sbjct: 966  DAVRMRLRPILMTSLAFILGVMPLVISTGAGSGAQNAVGTGVMGGMVTATVLAI 1019


>gi|330909317|gb|EGH37831.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli AA86]
          Length = 1034

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGQGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 83/222 (37%), Gaps = 8/222 (3%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           + +   G+   L         + A    L  ++    + + +    +T         E++
Sbjct: 282 NGKPAAGQGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVV 341

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           +     +++  + M +++         L     + + +  T    A FG   N   +  +
Sbjct: 342 KTLFEAIMLVFLVMYLFLQ---NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGM 398

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  IG  V+D +VV + +     +    +  R+  +KS+++  G  V  +M      +PM
Sbjct: 399 VLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFIPM 456

Query: 787 AVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           A +GGS       F+I +   + ++   ++ +   +   +  
Sbjct: 457 AFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|281180308|dbj|BAI56638.1| acriflavine resistance protein [Escherichia coli SE15]
          Length = 1034

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G           +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQEQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|315300930|gb|EFU60150.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 16-3]
          Length = 1034

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLRVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|90412609|ref|ZP_01220611.1| putative acriflavin resistence protein [Photobacterium profundum
           3TCK]
 gi|90326417|gb|EAS42829.1| putative acriflavin resistence protein [Photobacterium profundum
           3TCK]
          Length = 1051

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/690 (11%), Positives = 192/690 (27%), Gaps = 40/690 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G + AL        +  +P   P +          G        
Sbjct: 8   QRPKFALVISIILTLAGAIAAL-----SLPVAEYPKISPPSV---------GVTAYYSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++             +  + ++F      +     V   + 
Sbjct: 54  SAEVVEEAIADPIEASVNGVENMIYMSSKSANDGSYSLNVTFDIGTDPDMAQVNVQNRIS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + SKL  + +   +         +++                  I     DQ+   +  
Sbjct: 114 QIESKLPAEVRMVGVTVKKRSPDLLMVLNFYSPDGKYGDQFLVNYINLNVKDQLARVKGI 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP ++  L  TT+ ++      N        G     ++   Q
Sbjct: 174 SEVNVLGGGEYAMRVWLDPEKMANLGLTTSDVNAALAEQNVQVAAGQVGAPPYNNAQEVQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           + +  K  +                 +    +          F      +          
Sbjct: 234 FNLVTKGRL-------------ETVEEFEDVVLRANNDGSIVFLKDVARVELGKKFYTGN 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +           + ++  +   + +    L   +                      S  
Sbjct: 281 GMFRGQPAAIVTLNLQSDANALESGDAVMSLLDGMNKNFPEGMAYETSYDTTLFVAESIK 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V +M +   +  L+   +I +++I T A++   G T+   ++ G+
Sbjct: 341 GVVVTLIQAIILVIAVTYMFLGSMRSTLIPVVAIPVSLIGTFAIMLAAGFTINTVTLFGL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---ALIATV 475
           +L IG+ VD  ILV E +     ++   S   +  +        I  S +      I   
Sbjct: 401 ILAIGIVVDDAILVIENVDTNMARDPSLSPRQATLIAMKEVTGPIITSTMVLLAVFIPVA 460

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLS 529
           +L    G   R FA+T+ +S++IS   A+++  A+   +       + +  K+ +     
Sbjct: 461 MLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGDGNKSRWFKTFNKGLDK 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                         ++        +     +     T       + KG + + V      
Sbjct: 521 VTLKYGSIAGYLVRKSVLLVTFFILAVGAVTYLSKTTSTAFVPTEDKGILLVNVQLPDSA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            LS        LQ         +G              +     +   +K+       + 
Sbjct: 581 SLSRTEETTIKLQDILAEEPGIEGITVANGYAFLTGAAASNGASLFIKLKEW-GVRNEME 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIA 679
              ++  +  +I+     +    ++ +  A
Sbjct: 640 GDHSSFAISNRINARSATELPEAIVFAMGA 669



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 85/247 (34%), Gaps = 10/247 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + + AN    +  ++              N          +              + V  
Sbjct: 251 VVLRANNDGSIVFLKDVARVELGKKFYTGNGMFRGQPAAIVTLNLQSDANALESGDAVMS 310

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRF----KWYFALG 695
            +  +                +  +    I GV+++ I A+++ I + +         L 
Sbjct: 311 LLDGMNKNFPEGMAYETSYDTTLFVAES-IKGVVVTLIQAIILVIAVTYMFLGSMRSTLI 369

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + +  T       G   N   +  ++  IG  V+D ++V + +  NM    + +
Sbjct: 370 PVVAIPVSLIGTFAIMLAAGFTINTVTLFGLILAIGIVVDDAILVIENVDTNMARDPS-L 428

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
           S R     ++ E  G  + ++M      +P+A+  G        FA+ +   +V+++ ++
Sbjct: 429 SPRQATLIAMKEVTGPIITSTMVLLAVFIPVAMLPGITGIMYRQFALTICISVVISSINA 488

Query: 813 IFIAAPI 819
           + ++  +
Sbjct: 489 LTLSPAL 495



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 61/167 (36%), Gaps = 6/167 (3%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             + I    ++ I + +++  +++ W   L  I  + +    +    A+ G   NL A   
Sbjct: 872  NQAIYAFALALIFIYLFMVAQYESWSIPLAIILVVPVATLGSFLALAITGTALNLYAQIG 931

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LI  +  + +++ +  +  ++     +       +           TS +  + +LP
Sbjct: 932  LVLLIALAAKNAILIVEFAK--IEREENELDIGKAAVRGGKLRFRAVNMTSWSFILGILP 989

Query: 786  M-AVWGGSVIG--SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +    G   I   S  I +  G++    +  F+       +   R K
Sbjct: 990  LIFASGAGHISQNSLGISLTGGLLCVLLAGTFLIPGFFAQVQKRREK 1036


>gi|119713411|gb|ABL97473.1| protein-export membrane protein SecD [uncultured marine bacterium
           HF130_81H07]
          Length = 604

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 163/511 (31%), Positives = 272/511 (53%), Gaps = 39/511 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG + ++EVD +  +   L+  +  +R+ L+ E +
Sbjct: 103 NLAANTPDWLKALNAKPMKLGLDLRGGVNFLMEVDTELLLQTKLESTASVIRNSLRDERV 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +   +NKI +S  D    E     V          L++D  +NL+         + 
Sbjct: 163 KTNFIEIEENKILVSLVDDEKTEIFNGIVND-----LGNLDIDLDQNLVYE-------LS 210

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            S   ID+ I +A+ Q++  +R R++++G+SE  +QR G  RI +QLPG QD +  ++++
Sbjct: 211 FSDEEIDETIDYAVLQNLTTLRNRVNELGVSEPVVQREGRKRISVQLPGIQDTAEAKKII 270

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G TA + F     +NS    +    +     G +  +E KV ISG  ++ A+  FD    
Sbjct: 271 GKTANLEFRLEAKDNSLASRVESFPYR----GLKTRLEKKVIISGDRVSDASVGFDENGF 326

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLTAPV 307
              V+IS D  G  +    TR+N+G  +                         + + +  
Sbjct: 327 PQ-VNISLDSDGGAQMHRATRNNVGTRMAVLFVERKILSDVDSGINSIKNFYDKRIISLA 385

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             Q+  + + +I+G  +   A  LA +LRAG+L   +N VEE  +G  LG+D+I  G  +
Sbjct: 386 TIQSALANQFRITGLDSPAEASELALLLRAGALAAPMNFVEEGTIGPSLGADNIRLGINS 445

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           ++ GL L+++FMI  Y  +G +A+ ++ LN+IL  +++S+L ATLTLP IAGIVL IG+A
Sbjct: 446 LILGLSLVLVFMIFYYKVFGFIANLAVLLNLILIASIMSILSATLTLPGIAGIVLTIGMA 505

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+  RIREE ++      ++  G++RA+ TI D+N+T LI  ++L+  G G ++G
Sbjct: 506 VDANVLIFSRIREELKRKLKPLEAITSGYNRAFITIVDANLTTLIVALILYIVGTGPIQG 565

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           FAIT+ + IL SMFTAI   R ++ FI   +
Sbjct: 566 FAITLSVGILTSMFTAILFTRMLVFFIYARR 596



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 104/267 (38%), Gaps = 5/267 (1%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
            ++       G ++ VL      LS V S + S++                +  Q++   
Sbjct: 340 QMHRATRNNVGTRMAVLFVERKILSDVDSGINSIKNFYDKRIISLATIQSALANQFRITG 399

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTE-IVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             +     E+        +        E  +GP +  + IR GI  +I+    +L+++  
Sbjct: 400 LDSPAEASELALLLRAGALAAPMNFVEEGTIGPSLGADNIRLGINSLILGLSLVLVFMIF 459

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            +K  F   A   ++L++       ++      L  +A ++  IG +V+  V+++ R+R+
Sbjct: 460 YYKV-FGFIANLAVLLNLILIASIMSILSATLTLPGIAGIVLTIGMAVDANVLIFSRIRE 518

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +K         + I    N      V  ++   I  L + + G   I  FAI ++ GI+
Sbjct: 519 ELKRKLK---PLEAITSGYNRAFITIVDANLTTLIVALILYIVGTGPIQGFAITLSVGIL 575

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I     ++ FIY  R    +I
Sbjct: 576 TSMFTAILFTRMLVFFIYARRRNIEKI 602



 Score = 37.7 bits (85), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 16/35 (45%)

Query: 1  MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF 35
          MR   W +    ++  IG++ +LPN  P     + 
Sbjct: 1  MRFQAWKIFSILIVLSIGIIFSLPNIFPPDPSVQI 35


>gi|294651480|ref|ZP_06728793.1| preprotein translocase subunit SecF [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822630|gb|EFF81520.1| preprotein translocase subunit SecF [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 322

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 154/309 (49%), Gaps = 3/309 (0%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           M  +      ++    D   I FM+       ISIL +I SI  + T GLN G+DF GG+
Sbjct: 1   MSDLTQRDSKQYGRPDDLKIIPFMKIAKPAAIISILLTIASIFFIATKGLNLGLDFTGGV 60

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              +    PV  S V   L      D   Q      + +VR+  Q  D +    + + + 
Sbjct: 61  SAELNYQNPVQPSQVTQALNQAGFKDAVVQTLGSNTDLIVRMPVQ--DDLVVDDLSQSIT 118

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           + +        +   + VG  +  EL  +    V ++ I MLIY+ IRF++  A+GA+ +
Sbjct: 119 QAVQLPNNTVNVHKVDAVGGAVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVMS 178

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  DI   +G FALF   F+LT +AA+L +IG+S+ND +VV DR+R+N +    + S R+
Sbjct: 179 LFHDIVIIIGAFALFQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRETSS-RE 237

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +ID ++ ETL R+++TS    + V+ M + GG  +  F+  M  G+ V   SSI+I    
Sbjct: 238 IIDIALTETLRRTIHTSATLLLVVVAMFILGGDGLHWFSAAMIVGVFVGTYSSIYIGTAY 297

Query: 820 LLFIYDWRA 828
            L+    R 
Sbjct: 298 ALWRGLSRQ 306


>gi|254249794|ref|ZP_04943114.1| Acriflavin resistance protein [Burkholderia cenocepacia PC184]
 gi|124876295|gb|EAY66285.1| Acriflavin resistance protein [Burkholderia cenocepacia PC184]
          Length = 1066

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   +   +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQSIREQNVQVAAGVIGASPSLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  L+   ++ +++I T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLAFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEGGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 90/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 252 IVVKTTPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  +L 
Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++     +
Sbjct: 371 PLIAVPVSIIGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIEG---GM 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           + R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 428 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 487 SLTLSPALSAILLK 500



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/104 (17%), Positives = 41/104 (39%), Gaps = 3/104 (2%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             L     +  +   ++    L   + TS+A  + V+P+    G+
Sbjct: 960  -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGA 1002


>gi|260769216|ref|ZP_05878149.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio furnissii CIP 102972]
 gi|260614554|gb|EEX39740.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio furnissii CIP 102972]
          Length = 1050

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 81/692 (11%), Positives = 194/692 (28%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +      L    +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAIA-----LSILPVAEYPKISPP-------------SVSVTAF 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    +T++F      +     V 
Sbjct: 50  YTGASAEVVEQAVADPIETSVNGVENMIYMSSKSANDGSYNLTVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++            +  +  +     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFFSPDGRYDDMFLTNYVNLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ +       N        G      +
Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPKKMASLKLTTSDVYAALAEQNVQVAAGRIGAAPYNHA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +  +              +    +          +      I      
Sbjct: 230 QDVQFNLVTKGRLESVQ-------------EFENVVLRANNDGSSIYLKDIARIELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    +   L        +            
Sbjct: 277 YDGNGKFRGRDSSIVALSLQSDANALESGQAVMDMLETLSGNFPDGMVYETSYDTTLFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++ + G T+   +
Sbjct: 337 ESIKSVVKTLVEAIILVIAVTYLFLGSFRSTLIPVVAIPVSLIGTFAVMLMTGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G++L IG+ VD  ILV E +     K+   S   +  M        I  S +  L   
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTLSPRQATLMAMKEVTGPIITSTLVLLAVF 456

Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +    L    G   R FA+T+ +S++IS   A+++  A+   +         +  K+ + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCAMVLKQGGDNTARWFKAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                         I   ++    V   +     S     T       + KG + + V  
Sbjct: 517 GLEHVTNRYGQIAGILVKKSLMLIVFFVVAVGAVSWMAKNTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     +   +    T  
Sbjct: 577 PDSASLSRTEETTAQLMAMVEKEPGVDGVTVANGYSFMTGAAASNGASMFIKLHDWETRR 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +   +  +I+    +     ++ + 
Sbjct: 637 AL-PGDHSANAISMRINGHAAQTLPQAIVFAM 667



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 88/235 (37%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L  +       +  D + +    + + +        +++   + +  + + ++   P 
Sbjct: 262 IYLKDIARIELGKKFYDGNGKFRGRDSSIVALSLQSDANALESGQAVMDMLETLSGNFPD 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
             +  T         E I+  +  ++ + I ++         +   L  +  + + +  T
Sbjct: 322 GMVYETSYDTTLFVAESIKSVVKTLVEAIILVIAVTYLFLGSFRSTLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N   +  ++  IG  V+D ++V + +         ++S R     ++ E
Sbjct: 382 FAVMLMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTLSPRQATLMAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      LP+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 45.5 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 674 IISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +   + IY   +     W   L  I  + +    +     L G   NL A   ++ LI
Sbjct: 877 AFALALIFIYLFMVAQYESWSIPLAIILVVPVATLGSFIALTLTGTALNLYAQIGLVLLI 936

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
             +  + +++ +  +  M+     +                   TS +  + + P+    
Sbjct: 937 ALAAKNAILIVEFAK--MEREEKDLPIEQAAIDGGKLRFRAVNMTSWSFILGIFPLIFAS 994

Query: 791 GS 792
           G+
Sbjct: 995 GA 996


>gi|218706880|ref|YP_002414399.1| multidrug efflux system protein [Escherichia coli UMN026]
 gi|293406868|ref|ZP_06650794.1| acriflavin resistance protein F [Escherichia coli FVEC1412]
 gi|298382609|ref|ZP_06992206.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           FVEC1302]
 gi|300898038|ref|ZP_07116409.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 198-1]
 gi|218433977|emb|CAR14894.1| multidrug efflux system protein [Escherichia coli UMN026]
 gi|291426874|gb|EFE99906.1| acriflavin resistance protein F [Escherichia coli FVEC1412]
 gi|298277749|gb|EFI19265.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           FVEC1302]
 gi|300358257|gb|EFJ74127.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 198-1]
          Length = 1034

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|134095880|ref|YP_001100955.1| aminoglycoside/multidrug efflux pump [Herminiimonas arsenicoxydans]
 gi|133739783|emb|CAL62834.1| Acriflavine resistance protein B [Herminiimonas arsenicoxydans]
          Length = 1049

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 74/551 (13%), Positives = 161/551 (29%), Gaps = 46/551 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G L           + ++P+  P               +V+    
Sbjct: 8   RPVFAWVLAIFIMLAGALAI-----TSLPVSQYPNIAPPT-------------IVITATY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +   +G+     +   N   +IT++F+     +  A  V+ 
Sbjct: 50  PGATAQTLDDSVTSLIEQEMNGADGLQYVESQSQANGQVQITVTFSPETNPDLAAVDVSN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L     +  +     +   ++    +        +     + R  ++++   
Sbjct: 110 RLKRVEARLPAAVTQQGVQVAKARSNFLMFIGLSSTDGRLDPVALGDYLSRNVLNEVKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L  L  T A+++      N    G + G      S 
Sbjct: 170 PGVGQAQLFGT-ERAMRIWIDPNKLVGLNLTPAEVTAAINTQNALVAGGILGDLPSPSSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    ++S                +    I                 I       
Sbjct: 229 QISATVVVNGQLS-------------SPEEFGKIILRANKDGSSVRLRDVARIEVGGQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +   T          L           V          
Sbjct: 276 QTSGRLDGNPTSFIGVQLSPTANALGTATAVHKKMEDLARYFPAGVKYTVPYDTSKFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++ L+    + + ++ T A L + G ++ + ++
Sbjct: 336 SIEEVVKTLIEAIILVFLVMYLFLQNIRYTLIPTIVVPVALLGTFATLLVFGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLSPRDATRKAMGQITGAIIGITLVLIAVFLP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFG   G   R F+++M  S++ S   A ++  A+   I     +K ++         
Sbjct: 456 MAFFGGAVGAIYRQFSLSMVASMVFSALMAFTLTPALCATI-----LKPVEKGHHHEKGG 510

Query: 534 IPDCIAIQFMR 544
                   F +
Sbjct: 511 FFGWFNRIFHK 521



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 88/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q    S +      +F+        +++     +    + +    P 
Sbjct: 260 VRLRDVARIEVGGQSYQTSGRLDGNPTSFIGVQLSPTANALGTATAVHKKMEDLARYFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      K  +  I + +  +I + I + + +++  +   + L     + + +  T
Sbjct: 320 GVKYTVPYDTSKFVKISIEEVVKTLIEAIILVFLVMYLFLQNIRYTLIPTIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N+  +  ++  IG  V+D +VV + +     +    +S RD   K++ +
Sbjct: 380 FATLLVFGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMSEEGLSPRDATRKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +  ++      LPMA +GG+V      F++ M   +V +A  +  +   +
Sbjct: 438 ITGAIIGITLVLIAVFLPMAFFGGAVGAIYRQFSLSMVASMVFSALMAFTLTPAL 492



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 62/163 (38%), Gaps = 10/163 (6%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              E  G  +  +        +  +S IA+ + +   ++   ++     L++ +       
Sbjct: 851  GYEWTGQSLEEQTSGNQAPALYALSLIAVFLVLAALYEST-SIPLSVMLVVPLGILGALL 909

Query: 712  ALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             +   G+  ++     ++ ++G S  + +++ +  +    L        +   ++++   
Sbjct: 910  GVTLRGMPNDVYFKVGMIAVVGLSAKNAILIIEFAKD---LQAQGKGLIEATLEAVHLRF 966

Query: 770  GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               + TS+A  + VLP+ +    G +   +    +  G++ A 
Sbjct: 967  RPIIMTSLAFILGVLPLVIASGAGSASQRAIGTGVMGGMITAT 1009


>gi|149187512|ref|ZP_01865809.1| protein export protein SecD [Vibrio shilonii AK1]
 gi|148838392|gb|EDL55332.1| protein export protein SecD [Vibrio shilonii AK1]
          Length = 607

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 159/525 (30%), Positives = 261/525 (49%), Gaps = 32/525 (6%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +G  ++  + +  S     P  +       I LGLDLRGG   +L VD D  V+     
Sbjct: 98  ALGEWVSKDDSMSYSYTSVAPEWLQTMGFTPIKLGLDLRGGVQFLLNVDVDQAVSEQRDA 157

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             DE++  L+KE I    +R   +  I ++  DS  +  +   V        +       
Sbjct: 158 VVDEIKQDLRKERIFGVQVRPDTDTGIRVTSKDSEGEIAVRKFVNANYPEWQA------- 210

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
                     E+SI +   N     +  ++Q+++I+RQRI+++GI+E+ +QR G   I I
Sbjct: 211 -----KGEGDELSIKMKAQNYADFQNLTMQQNLKIMRQRIEELGITEAMVQRQGESGIRI 265

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPG QDPS  ++++G TA ++FH+V               ++D  G    +  K  ++G
Sbjct: 266 ELPGVQDPSLAKRVIGATASLAFHEVS----TSSNPVSTLKVKDEQGKPVTLVKKPVLTG 321

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDG 300
            H+  A   FD      V        G            +    V R+            
Sbjct: 322 EHIVNARVGFDQMHRPEVDISLDHAGGKMMSDFSATHIGKPMATVYREYGVDARGETQRN 381

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    Q+    + +I+G+  +E A  LA +LRAGSL   + IVEER +GA LG+++
Sbjct: 382 EKVISVATIQSQLGSQFRITGSGNLEEAQQLALLLRAGSLTAPVTIVEERTIGASLGAEN 441

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAG 419
           I  G  A+  G+ L + FM + Y + G VA+ ++ LN+   L L++L+  A LTLP IAG
Sbjct: 442 IQNGFAALALGMGLTLTFMALWYRRLGWVANVALVLNMSCLLGLIALVPGAILTLPGIAG 501

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +G+AVD+N+L+ ERIR++  + +S   ++D GF+ A +TI D+NIT +I  V+L+ 
Sbjct: 502 LVLTVGMAVDTNVLIFERIRDKLAEGRSFAQAIDQGFNSAVATIMDANITTMITAVILYA 561

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G G ++GFA+T+GL +L SMFT I   RA++         + + 
Sbjct: 562 IGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLKWGRDTRREVR 606



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 86/211 (40%), Gaps = 6/211 (2%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    +      +  +   +    TI     +G  +  E I+ G   + +     L ++
Sbjct: 401 TGSGNLEEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFM 460

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
            + ++      A   L+L+++  LG  AL  G    L  +A ++  +G +V+  V++++R
Sbjct: 461 ALWYR-RLGWVANVALVLNMSCLLGLIALVPGAILTLPGIAGLVLTVGMAVDTNVLIFER 519

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           +R  +       SF   ID+  N  +   +  ++   I+ + +   G   I  FA+ +  
Sbjct: 520 IRDKLAE---GRSFAQAIDQGFNSAVATIMDANITTMITAVILYAIGNGPIQGFALTLGL 576

Query: 804 GIVVAASSSIFIAAPILLF-IYDWRAKNARI 833
           G++ +  + IF +  I+         +  R+
Sbjct: 577 GLLTSMFTGIFASRAIINLKWGRDTRREVRV 607


>gi|308185934|ref|YP_003930065.1| acriflavine resistance protein B [Pantoea vagans C9-1]
 gi|308056444|gb|ADO08616.1| acriflavine resistance protein B [Pantoea vagans C9-1]
          Length = 1051

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 71/688 (10%), Positives = 177/688 (25%), Gaps = 51/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G L  L     +  ++++P+  P               + ++   
Sbjct: 8   RPIFAWVLAIIIMLVGALSIL-----KLPIEQYPNVAPPA-------------IEIQATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S       +T+SF      +    +V  
Sbjct: 50  PGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSDSSGTLTLTISFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    D       + S  I     D I  +
Sbjct: 110 KLQLATPLLPQEVQQQGIQVKKSSSSFLMVAGFISDDDNMTQNDISDFISSSIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     T   +       N        G        
Sbjct: 170 KGVGDTQVFGAQ-YAMRIWMDPHKLNNYNLTPVDVISALNTQNTQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTSTD-------------EFGKILLKVNEDGSQVRLRDVARIELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A L+         +           
Sbjct: 276 EIVARYNGKPASGIGIKLATGANALDTANAVKAELAKLQPTFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++S  G ++   ++
Sbjct: 336 SIFEVVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVISAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLAAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++ +S+  A  +  A+   +                   
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVAFILTPALCATMLKPVKKGEHGKTTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + V   ++    +   +         + +G +    
Sbjct: 516 NRMFDKSTHHYVDSVGHMIRSTGRYMVIYLLIVVGMAFLFMRLPSSFLPEEDQGLLLAQA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +    ++ +    +  F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLDQVTDYFLTQEKDTVKSVFTVNGFGFAGRGQNTGIAFVSLKPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIV 671
                  +        +    +    ++
Sbjct: 636 RAGSDMKVPAIAGRAMQALGAIKDAMVI 663



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 86/247 (34%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +      + +        +++     ++    K+    
Sbjct: 258 SQVRLRDVARIELGAENYEIVARYNGKPASGIGIKLATGANALDTANAVKAELAKLQPTF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + + + + +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISIFEVVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFAVISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GGS       F+I +   + ++   +  +   +   
Sbjct: 436 EQIQGALVGIALVLAAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVLVAFILTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPVKK 502



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L F
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALIF 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+  ++  V  +LT IG S  + +++ +  +  M          +   ++    L 
Sbjct: 915  TTLRGLSNDVYFVVGLLTTIGLSTKNAILIVEFAKDLMDKEGKG--LIEAALEACRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +    +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISTGAGSGSQNAVGTGVIGGMVTATILAI 1018


>gi|89075146|ref|ZP_01161582.1| Putative membrane protein SecD [Photobacterium sp. SKA34]
 gi|89049100|gb|EAR54666.1| Putative membrane protein SecD [Photobacterium sp. SKA34]
          Length = 577

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 161/515 (31%), Positives = 264/515 (51%), Gaps = 34/515 (6%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           L  ++    P  +       I LGLDLRGG   +L+VD         Q   D+LR   +K
Sbjct: 79  LTLALEPAAPMWLQDMGFEPIKLGLDLRGGVQFLLDVDVKQVYKNHAQQLMDDLRVNFRK 138

Query: 84  EGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           + I       +  +++ +          +   +        +              +   
Sbjct: 139 QEIRGSRAELKGMDEVIVRLPSEAANSKVRQFIREQYPQWQA-----------TNGSADN 187

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + + LS+     + +  ++Q+++ +R RI+++GI+E+++QR G +RI I+LPG QDP+  
Sbjct: 188 LLLTLSEKEKTDLRNLTVQQNLQTMRSRIEELGITEASVQRQGENRIRIELPGVQDPAAA 247

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           + ++G TA ++F+ V               L D++GN   V  K  + G H+  A A+F 
Sbjct: 248 KNVIGATASLAFYAVKE-----EGTGSTMILPDNNGNPIRVSRKPVLGGDHIVDARASFG 302

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQ 310
                P V+I+ D  G +   + +R N+GKP+A         A                Q
Sbjct: 303 ENGT-PEVNITLDSAGGKMMSDFSRMNVGKPMATSYSEYSRNAKGETVQTNKIISVATIQ 361

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                + +I+G  ++E A  LA +LRAGSL   + IVEER +G  LG+++I  G  A+  
Sbjct: 362 TQLGSRFRITGAGSLEDAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALAL 421

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVD 429
           GL + +LFM V Y + G VA+ ++  N+I+   LL+L+  A LTLP IAG+VL +G+AVD
Sbjct: 422 GLGVTLLFMAVWYRRLGWVANIALLSNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVD 481

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +N+L+ ERIR+  R  +S+  ++D GFS A+ TIFD+N T +I  VVL+  G G ++GFA
Sbjct: 482 TNVLIFERIRDMIRDGRSMAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFA 541

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +T+GL +L SMFT I   RA++  +      + + 
Sbjct: 542 LTLGLGLLTSMFTGIFASRAIINLVWGRDSRRDVR 576



 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 95/260 (36%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       ++ V        S    N +   +      +    +  L       G    +
Sbjct: 318 GKMMSDFSRMNVGKPMATSYSEYSRNAKGETVQTNKIISVATIQTQLGSRFRITGAGSLE 377

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I+ G   + +     L+++ + ++  
Sbjct: 378 DAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALALGLGVTLLFMAVWYR-R 436

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   L+ ++    G  AL  G    L  +A ++  +G +V+  V++++R+R  ++ 
Sbjct: 437 LGWVANIALLSNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDMIRD 496

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                S    ID+  +   G     +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 497 ---GRSMAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 553

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  I+  ++   ++ 
Sbjct: 554 TGIFASRAIINLVWGRDSRR 573


>gi|291616519|ref|YP_003519261.1| SecF [Pantoea ananatis LMG 20103]
 gi|291151549|gb|ADD76133.1| SecF [Pantoea ananatis LMG 20103]
          Length = 336

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 162/301 (53%), Gaps = 2/301 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L      + FMR       IS L  I SI ++   G N+G+DF GG  + +   +
Sbjct: 19  YNIEQLNHGRKVVDFMRWDTLAFIISGLLIIISIAIVGVRGFNWGLDFTGGTVIEINLEK 78

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P DL  +R+ L      +   QNF   ++ +VR+    G         ++V         
Sbjct: 79  PADLDTIRAELVKAGFQEPLIQNFGSSRDVMVRMPPVTG-PAGTELGNKVVTVINQTTQQ 137

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +T++  E VGP +  +L + G + ++ + IA+LIYI IRF+W  ALG +  L  D+  T
Sbjct: 138 NATVKRIEFVGPSVGSDLAQAGALALLSALIAILIYIGIRFEWRLALGTVLALAHDVIIT 197

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  +LF +E +LT VA+++++IGYS+NDK+VV DR+R+N +      S+ D+ + S+ +
Sbjct: 198 CGLLSLFRVEVDLTIVASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQ 256

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++ TS+     +L + ++GG+++  F++ M  G+ +   SSI++++ + L +   R
Sbjct: 257 TLSRTLITSLTTLAMILILFIFGGALLKGFSLTMLIGVTIGTISSIYVSSALALKLGMKR 316

Query: 828 A 828
            
Sbjct: 317 E 317


>gi|262275511|ref|ZP_06053321.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Grimontia hollisae CIP 101886]
 gi|262220756|gb|EEY72071.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Grimontia hollisae CIP 101886]
          Length = 1049

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 83/692 (11%), Positives = 194/692 (28%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +  L        +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAIALL-----TLPVAEYPRISPP-------------SVSVTAV 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YSGASAEVVEQAVADPIETSVNGVENMIYMSSKSANDGSYNLNVTFDIGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + ++  +         +++      +           I     DQI  
Sbjct: 110 NRVAQIESKLPPEVRQVGVTVKKRSPDLLMVLNFYSPEGKYDDQFLVNYINLNIKDQIAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    +P ++  L  TT+ +       N        G     ++
Sbjct: 170 VKGISEVNVIGGGEYAMRVWLNPEKMANLGITTSDVRSVLAEQNVQVAAGDIGAPPFNNA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               + +  K  +S +              +    +          +     ++      
Sbjct: 230 QEMTFKLVTKGRLSSVE-------------EFENVVVRANPDGSMVYLKDIADVSLGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +  I + ++  +   +          L                     
Sbjct: 277 YTGNGKFRDRPASIVILNLQSDANALESGGLVMERLEQLAQNFPEGMSYEASYDTTLFVS 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLVEAVLLVIAVTYLFLGSFRATLIPVVAIPVSLIGTFAVMLASGFTVNTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G++L IG+ VD  ILV E +     KN S     +  +        I  S +  L   
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTNMAKNPSLTPRQATLLAMKEVTGPIITSTLVLLAVF 456

Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +    L    G   R FA+T+ +S+L+S   A+++  AM   I         +  K  + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVLLSAINALTLSPAMCSLILRQGGDNHARWFKVFNN 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             +    GV   +           T       + KG + + +  
Sbjct: 517 GLEKITTKYGAVAGFLVRKTAVLGVLFIVAVGAAGYFAKTTSTGFVPQEDKGVMLINIQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L     +    DG              +     +   +K   T  
Sbjct: 577 PDAASLSRTEYVTRKLGEMVTAEPGVDGATVANGYAFLTGAAASNGASMFVKLKDWETRQ 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  + +I+  +I+ +   +    V+ + 
Sbjct: 637 ALDGDHSSFDII-NRINAKAAEELPEAVVFAM 667



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 90/232 (38%), Gaps = 9/232 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++  + +G   +      ++    +      S A       +  +  E +  +  +   
Sbjct: 265 KDIADVSLGKKFYTGNGKFRDRPASIVILNLQSDANALESGGLVMERLEQLAQNFPEGMS 324

Query: 656 IVGPKISRELIRKGIVGVIISAI-AMLIYIWIRF----KWYFALGAITTLILDITKTLGF 710
                 +   + + I GV+ + + A+L+ I + +     +   L  +  + + +  T   
Sbjct: 325 YEASYDTTLFVSESIKGVVKTLVEAVLLVIAVTYLFLGSFRATLIPVVAIPVSLIGTFAV 384

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   N   +  ++  IG  V+D ++V + +  NM    + ++ R     ++ E  G
Sbjct: 385 MLASGFTVNTVTLFGLILAIGIVVDDAILVIENVDTNMAKNPS-LTPRQATLLAMKEVTG 443

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             + +++      LP+A+  G        FA+ +   ++++A +++ ++  +
Sbjct: 444 PIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVLLSAINALTLSPAM 495



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/440 (12%), Positives = 120/440 (27%), Gaps = 26/440 (5%)

Query: 415  PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI--FDSNITALI 472
            P + G  +  G A  +    +       +           G   ++  I   ++     +
Sbjct: 600  PGVDGATVANGYAFLTGAAASNGASMFVKLKDWETRQALDGDHSSFDIINRINAKAAEEL 659

Query: 473  ATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMKSIDINPLS 529
               V+F  G  AV G   + G   ++      S   +   M   + +  +   I     +
Sbjct: 660  PEAVVFAMGPPAVPGMGPSSGFEFVLEDTLGRSRGELAMVMQQLMQKANEQPEIARTFST 719

Query: 530  RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-- 587
                +P                            L    +N    F    ++ + A+   
Sbjct: 720  FRANVPHFYIDIDREKAKQLGIPLSEIFTTLQGNLAGMYVNDFSLFGKNYRVTIQADGDY 779

Query: 588  ----------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                       V  +  +    S  I        D    + +        S A       
Sbjct: 780  RNDLDSMGRFHVRSNTGQMIPLSTLIDIEQVFEPDVAWRYNMYRAAVIQGSPAPGYSSGD 839

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IWIRFKWYFA 693
                +  +      Q  +     ++ +  + G + +   +   + IY   +     W   
Sbjct: 840  AIAAMERVAADVLPQGYQYEWTGMAYQEKQAGNLAIYAFALALIFIYLFMVAQYESWSIP 899

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  I  + +    +    A+ G   NL A   ++ LI  +  + +++ +  +   +    
Sbjct: 900  LAIILVVPVATLGSFLALAMTGTPLNLYAQIGLVLLIALAAKNAILIVEFGKNEREQNE- 958

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--SFAIPMAFGIVVAAS 810
             +                   TS +  + ++P+    G   I   S  I +  G++    
Sbjct: 959  -LPIDKAAVMGGKLRFRAVNMTSWSFILGIMPLIFATGAGHISQNSLGISLTGGLLCVLL 1017

Query: 811  SSIFIAAPILLFIYDWRAKN 830
            +  F+       I   R K+
Sbjct: 1018 AGTFLIPGFFAVIQRLREKH 1037


>gi|237747653|ref|ZP_04578133.1| acriflavin resistance transmembrane protein [Oxalobacter formigenes
           OXCC13]
 gi|229379015|gb|EEO29106.1| acriflavin resistance transmembrane protein [Oxalobacter formigenes
           OXCC13]
          Length = 1079

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 69/625 (11%), Positives = 171/625 (27%), Gaps = 51/625 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++        Q  + ++P+  P               + +    
Sbjct: 8   RPVFAWVIAIFITLAGIISI-----TQLPVSQYPNIAPP-------------QVTVSATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKK---EGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  ++      +   +             +   + KITL+F      E  A  V  
Sbjct: 50  PGATAKTVEDSVISIIEQEMNGATGLQYMESESQSNGSGKITLTFTPETDVELAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ + S+L     +  +     +   + +            I+    + R  I+ I   
Sbjct: 110 RIKRIESRLPSAVSQQGVQINKARSNYVAIITLISSDGSMSPIQLGDYLSRNVINDIKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L  L  T   ++      N               ++
Sbjct: 170 PGVGDATIFGT-ENAMRIWIDPIKLTGLKLTPNDVANAIRGQNAVVTSGAIAGTPNVGTE 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  + ++                 +    +                 +       
Sbjct: 229 TFTANVNVRGQL-------------KTAEEFGNIVLRANTDGSLVRLKDVARVELGGQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L    I           +    +++       L           ++         
Sbjct: 276 ETYARLDGHPIAGFGVLPTPTANTMAMMQSIRDKMEELSQYFPKGVTYSIQNDTSKFVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   ++ ++    + + ++ T A+++ LG ++ + S+
Sbjct: 336 SIHEVVKTLFEGIFLVFVIMYLFLQNFRYTIIPTIVVPIALMGTFAVMNALGFSINMLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ +D  I+V E +      +  S   +      +    I   ++      + 
Sbjct: 396 FGMVLSIGILIDDAIVVVENVERIMATEGLSPRDATYKAMGQITGAIVGISLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+I M  S+  S F A+S+  A+   I           +       
Sbjct: 456 MAFFGGSVGAIYRQFSIAMVASMAFSAFLALSLTPALCATILKPIDPNAHEEKKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    S        ++    R   + +    +    +             + +G +   V
Sbjct: 516 NRKFHSMTMTYERQVSKTLGRTMRYMLIYGAIVVCTAFMFWKLPTSFLPNEDQGYVYTNV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISF 608
                   +     L+ ++   +  
Sbjct: 576 QLPSGATQARTLDALKVVEDQFMKE 600



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 91/235 (38%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q  +   +           L     +++A  + +    +++++  P 
Sbjct: 260 VRLKDVARVELGGQSYETYARLDGHPIAGFGVLPTPTANTMAMMQSIRDKMEELSQYFPK 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               + +    K  +  I + +  +      + + +++  + + + +     + + +  T
Sbjct: 320 GVTYSIQNDTSKFVKVSIHEVVKTLFEGIFLVFVIMYLFLQNFRYTIIPTIVVPIALMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+ ++  ++  IG  ++D +VV + +     + T  +S RD   K++ +
Sbjct: 380 FAVMNALGFSINMLSMFGMVLSIGILIDDAIVVVENV--ERIMATEGLSPRDATYKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  S+      +PMA +GGSV      F+I M   +  +A  ++ +   +
Sbjct: 438 ITGAIVGISLVLTAVFIPMAFFGGSVGAIYRQFSIAMVASMAFSAFLALSLTPAL 492



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 81/250 (32%), Gaps = 13/250 (5%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +       L V  ++   +     +      G +    ++G     +      G S    
Sbjct: 776  MTPDDIKNLYVRNSKGTMVPFSAFSSSEWSNGPVQLIRYNGYPAMRITGSPAEGYSTGAA 835

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                +   +              +           +  +   +S +A+ + +   ++   
Sbjct: 836  MDEMVALTQQLPEGFGYEWTGQSLEEKTSGS----QAPMLFALSLLAVFLCLAALYESTS 891

Query: 693  ALGAITTLIL--DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A+  ++        +G F L G+  ++     ++  IG +  + +++ +  +    L
Sbjct: 892  IPVAVLLVVPLGVFGALIGVF-LRGMPNDVYFKVGLIATIGLAAKNAILIVEFAKD---L 947

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVV 807
                        +++       + TS+A  + V+P+A+  G+      +    + FG++ 
Sbjct: 948  QAQGKGLIRSTLEAVRLRFRPIIMTSLAFILGVVPLAIASGAGSAAQQAIGTGVLFGMIA 1007

Query: 808  AASSSIFIAA 817
            A   ++++  
Sbjct: 1008 ATVLAVYLVP 1017


>gi|253771904|ref|YP_003034735.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163201|ref|YP_003046309.1| multidrug efflux system protein [Escherichia coli B str. REL606]
 gi|242378800|emb|CAQ33592.1| acrF, subunit of AcrEF-TolC multidrug efflux transport system
           [Escherichia coli BL21(DE3)]
 gi|253322948|gb|ACT27550.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975102|gb|ACT40773.1| multidrug efflux system protein [Escherichia coli B str. REL606]
 gi|253979258|gb|ACT44928.1| multidrug efflux system protein [Escherichia coli BL21(DE3)]
          Length = 1034

 Score =  196 bits (497), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D       + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDITQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMHLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|218696965|ref|YP_002404632.1| multidrug efflux system protein [Escherichia coli 55989]
 gi|218353697|emb|CAU99957.1| multidrug efflux system protein [Escherichia coli 55989]
          Length = 1034

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNSDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLH 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|191169156|ref|ZP_03030914.1| acriflavine resistance protein F [Escherichia coli B7A]
 gi|190900798|gb|EDV60589.1| acriflavine resistance protein F [Escherichia coli B7A]
          Length = 1034

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNSDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    +++  L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVHMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|59714332|ref|YP_207107.1| multidrug efflux system protein [Vibrio fischeri ES114]
 gi|59482580|gb|AAW88219.1| multidrug efflux system protein [Vibrio fischeri ES114]
          Length = 1050

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/694 (11%), Positives = 190/694 (27%), Gaps = 48/694 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAIALAV-----LPVAEYPKISPP-------------SVSVSAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  +     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYVNLNIKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP ++  L  TT+ +       N        G      +
Sbjct: 170 VTGISEVGVLGGGEYAMRVWLDPDKMTNLGLTTSDVHAALAEQNVQVAAGKIGAAPYASA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +  +              +    +          +      +      
Sbjct: 230 QDVQFNLVTKGRLESVE-------------EFENVVLRANNDGSSVYLKDIARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    +   L A                   
Sbjct: 277 YDGNGQFRGKDASIVTLSLQSDANALESGKAVMEMLEKLSATFPEGLAYETSYDTTLFVS 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++ + G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMLMTGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +    +++   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTIMKRDPSLSPRKATLIAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDI 525
           I   +L    G   R FA+T+ ++++IS   A+++  A+   +++       +  K+ + 
Sbjct: 457 IPVAMLPGITGIMYRQFALTICIAVIISSINALTLSPALCSLVLKRGGDNTARWFKAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                     +       +         I     +     T       + KG + + V  
Sbjct: 517 GLDKVTDKYGEIAGFFVRKTMILMTFFVIALGAVTFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        +       Q  DG              +     +   +K      
Sbjct: 577 PDSASLSRTEEVSAKVLEIIEQEQGVDGVTVANGYAFLTGAAASNGASLFVKLKPWGERN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                  +  I      R  +      VI +  A
Sbjct: 637 DMDGDNSSFAITNRINGRAAME-LPEAVIFAMGA 669



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 89/242 (36%), Gaps = 5/242 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +       +  D + Q    + + +        +++   + +  + +K++   P 
Sbjct: 262 VYLKDIARVELGKKFYDGNGQFRGKDASIVTLSLQSDANALESGKAVMEMLEKLSATFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GLAYETSYDTTLFVSESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N   +  ++  IG  V+D ++V + +   +     S+S R     ++ E
Sbjct: 382 FAVMLMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTIMKRDPSLSPRKATLIAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  + +++      +P+A+  G        FA+ +   +++++ +++ ++  +   + 
Sbjct: 441 VTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAVIISSINALTLSPALCSLVL 500

Query: 825 DW 826
             
Sbjct: 501 KR 502



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 64/197 (32%), Gaps = 6/197 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
               +++   V     Q           +   + I    ++ I + +++  +++ W   L 
Sbjct: 842  AAMERVAAEVLPHGYQYEWTGMAYQEVKAGNQAIYAFALALIFIYLFMVAQYESWSIPLA 901

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             I  + +    +     L G+  NL A   ++ LI  +  + +++ +  +   +     +
Sbjct: 902  IILVVPVATFGSFLALNLTGMPLNLYAQIGLVLLIALAAKNAILIVEFAKNEREE--KEV 959

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--SFAIPMAFGIVVAASSS 812
               D               TS +  + +LP+    G   I   S  + +  G++      
Sbjct: 960  GLDDASVNGGRLRFRAVNMTSWSFILGILPLVFASGAGYISQNSLGVSLIGGLLCVLLVG 1019

Query: 813  IFIAAPILLFIYDWRAK 829
              +       +   R K
Sbjct: 1020 TLLIPGFYAMVQRRREK 1036


>gi|301022225|ref|ZP_07186140.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 69-1]
 gi|300397638|gb|EFJ81176.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 69-1]
          Length = 1034

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 153/552 (27%), Gaps = 46/552 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G+L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGVLAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +     +K +         
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-----LKPVSAEHHENKG 509

Query: 533 LIPDCIAIQFMR 544
                    F  
Sbjct: 510 SFFGWFNTTFDH 521



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 67/166 (40%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
            + +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  DYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|114765510|ref|ZP_01444618.1| Cation/multidrug efflux pump, RND family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542103|gb|EAU45135.1| Cation/multidrug efflux pump, RND family protein [Roseovarius sp.
           HTCC2601]
          Length = 1044

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/585 (11%), Positives = 161/585 (27%), Gaps = 41/585 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L  L        + ++P   P               + +    
Sbjct: 8   RPVFAWVISILIMGVGVLSLL-----TLPIAQYPQIAPP-------------SVRVSAQY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGASAQTVANTVTQIIEQQMTGLDGMRYMSSSSTSAGTASITLTFESGTDPDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L    + L    ++  +          ++     +       + S  +    +D+    
Sbjct: 110 KLSQATALLPETVQRQGVTVEKASSSFFMVIGLISEDGRLEQADLSDYLNSNLVDEFARI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DPS+L     T + +       N       FG     +  
Sbjct: 170 EGVGGAQVFGAQ-YAMRIWLDPSKLAAFEMTPSDVVSAVSAQNAQISAGSFGTLPAPEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +S                     +   E             +       
Sbjct: 229 QLNATITAQSLLS-------------TPEDFRNIVLRTETNGGLVLLQDVAEVEIGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E                   ++          
Sbjct: 276 STIARYNGQPSSGMALQLASGANALDTSERVKERIEEYSEFFPEGVGYVIPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV  V+ + +   +  L+   ++ + ++ T  +L++ G T+   ++
Sbjct: 336 SIHEVQKTLIEAIILVFFVMLLFLQNLRATLIPTLAVPVVILGTFGILAMAGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475
             +VL IGL VD  I+V E +      +  S   +      +     I  + + + +   
Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERIMEEEGLSPREATRKSMGQITGALIGIALVLSAVFVP 455

Query: 476 VLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R F+IT+  ++ +S+  A+++  A+   +++ K +      P   F  
Sbjct: 456 MAFFPGSTGVIYRQFSITIVSAMALSVLVALTLTPALCATLLKAKDVNHTKRGPFGWFNK 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
             D  A  +     + +   +   +  + L       +     G 
Sbjct: 516 GFDKTADGYRGTVAYLIKRPLRIMLVYLALAGGMVYLFNNTPTGF 560



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 83/241 (34%), Gaps = 14/241 (5%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V         I   + Q   G    L         S      +E   +   E V    
Sbjct: 266 AEVEIGAENYSTIARYNGQPSSGMALQLASGANALDTSERVKERIEEYSEFFPEGVGYVI 325

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
             +T         E+ +  I  +I+    ML+++         L     + + I  T G 
Sbjct: 326 PYDTTPFIEISIHEVQKTLIEAIILVFFVMLLFLQ---NLRATLIPTLAVPVVILGTFGI 382

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINE 767
            A+ G   N   + A++  IG  V+D +VV    +R+ +        +S R+   KS+ +
Sbjct: 383 LAMAGFTINTLTMLAMVLAIGLLVDDAIVVVENVERIMEE-----EGLSPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 ITGALIGIALVLSAVFVPMAFFPGSTGVIYRQFSITIVSAMALSVLVALTLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/438 (11%), Positives = 130/438 (29%), Gaps = 21/438 (4%)

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
              + S+ G+V         N+ +     ++  +      S+     RA+          +
Sbjct: 601  ENVESVFGVVGFSFAGQGQNMGLAFVRLKDWEERPDPSQSVQAVAGRAFPAFMGIQDAQV 660

Query: 472  IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
               V       G V GF   +      +    ++    ++    + + + S+  + L   
Sbjct: 661  FPIVPPSVIELGNVSGFDFYLQAQAGQTHEQLLNARNQLLGMASQSELIGSVRPSGLEDA 720

Query: 532  FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                  I  +   A              +    + +  N     K    +   A+     
Sbjct: 721  AQFNLDIDWRAAGAVGVSPTDVGNLLSVAWAGQYVNDFNDNGRIKRVY-VQGEADSRATP 779

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            S ++        G++        +++    Q     +   +  ++               
Sbjct: 780  SDLQKWRVRNANGELVPFANFTSEDWAYGPQGLSRYNGIPSMQIQGEPAAGVTSGEAMAE 839

Query: 652  QNTEIVGPKISRELIRKGI------------VGVIISAIAMLIYIWIRFK-WYFALGAIT 698
                +        L   G+            +   +S  A+ + +   ++ W      + 
Sbjct: 840  MERLVSELPPGYALAWTGLSLEERDSGGQAPLLYALSLAAIFLCLAALYESWTIPFSVML 899

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             + + +  T+G    FG E  +     +LT+IG +  + +++ +  R+    Y       
Sbjct: 900  AMPIGVLGTMGAAYWFGFENGVFFQVGLLTVIGLTGKNAILIVEFARE---RYEAGEELL 956

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA-SSSIF 814
              + ++  +     + TS+A  + V+P+ +    G     +    +  G +       IF
Sbjct: 957  AAVAEAAKQRFRPIIMTSLAFSLGVVPLVLSSGAGAGGRTAVGSAVLGGTITGTVLGVIF 1016

Query: 815  IAAPILLFIYDWRAKNAR 832
            +    ++    +  K A+
Sbjct: 1017 VPLFFVVVQRIFGRKKAK 1034


>gi|163800319|ref|ZP_02194220.1| protein export protein SecD [Vibrio sp. AND4]
 gi|159175762|gb|EDP60556.1| protein export protein SecD [Vibrio sp. AND4]
          Length = 610

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 152/516 (29%), Positives = 267/516 (51%), Gaps = 27/516 (5%)

Query: 22  ALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL 81
           A   F   S+   + + M  + I LGLDLRGG   +L VD D           DE+++ L
Sbjct: 108 ASITFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVDKAFEEQRDALVDEIKANL 167

Query: 82  KKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           ++E I    +R + QN I +   +    +  +  +                      +++
Sbjct: 168 REERIRGVQVRAEGQNHIAVKSENESGLKAASQFIHQNY------------PGWTTKSSD 215

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
           +   +  S+ NI +  +  ++Q+++I+R RI+++GI+E+ +QR G   I I+LPG QDP+
Sbjct: 216 RGFELQPSEQNIQEFQTTTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPA 275

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           + + ++G TA ++FH+       +        L+D+DG    +  +  ++G H+  A A 
Sbjct: 276 QAKNVIGATASLAFHEAKDAGHAQSSQ--DLVLKDNDGRTVTLAKRPVLTGEHIINARAG 333

Query: 261 FDPKTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
            D      V        G            +    V R+       +      + +    
Sbjct: 334 VDKMGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTDERGMTERSERVISVATI 393

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           Q+    + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+ 
Sbjct: 394 QSQLGSQFRITGAGSMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALA 453

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAV 428
            G+ L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AV
Sbjct: 454 LGMGLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAV 513

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D+N+++ ERI+++ R+ +S   ++D+GF  A++TI D+NIT +I  V+L+  G G ++GF
Sbjct: 514 DTNVIIFERIKDKMREGRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGF 573

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           A+T+GL ++ SMFT +   RAM+  I      + + 
Sbjct: 574 ALTLGLGLMTSMFTGVFASRAMINLIWGRDGRRDVR 609



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    TI     +G  +  E I+ G   + +     L ++ + +
Sbjct: 408 SMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWY 467

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L  ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 468 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 526

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SF   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 527 MRE---GRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGFALTLGLGLMT 583

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+    + 
Sbjct: 584 SMFTGVFASRAMINLIWGRDGRR 606


>gi|26249858|ref|NP_755898.1| acriflavin resistance protein F [Escherichia coli CFT073]
 gi|26110286|gb|AAN82472.1|AE016767_232 Acriflavine resistance protein F [Escherichia coli CFT073]
          Length = 1034

 Score =  196 bits (497), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMIAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|218691557|ref|YP_002399769.1| multidrug efflux system protein [Escherichia coli ED1a]
 gi|218429121|emb|CAR09928.1| multidrug efflux system protein [Escherichia coli ED1a]
          Length = 1034

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKPAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKPAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|88799560|ref|ZP_01115136.1| protein-export membrane protein SecD [Reinekea sp. MED297]
 gi|88777645|gb|EAR08844.1| protein-export membrane protein SecD [Reinekea sp. MED297]
          Length = 613

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 156/540 (28%), Positives = 274/540 (50%), Gaps = 41/540 (7%)

Query: 11  YSMICCIGL-LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
             +   +G   +   N  P +    + +A+    ++LGLDL GG H ++EVD D ++   
Sbjct: 90  SILTTGLGGEFVIALNLAPTTP--SWLTALGGKPMALGLDLSGGVHFLMEVDMDKYIATR 147

Query: 70  LQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
           L  +  +++  L++EGI    +     + I ++  +  F++              S+   
Sbjct: 148 LTNWEADIKRSLREEGIRYRGVSVINDDTIQVNLVNDEFRDQA--------NRWFSRNLN 199

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
           D   + L       +++ L++  I  +  +AI+Q+   +  R+++IG++E  +QR G +R
Sbjct: 200 DFVTDDLTARGLPSVNLTLTEEAIIAMEDYAIQQNQTTLNNRVNEIGVAEPLVQRQGRNR 259

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           I++QLPGEQD +R + +LG +A + +              G  F         ++E  V 
Sbjct: 260 IVVQLPGEQDTARAKNILGKSANLEYRLQ------SRDGNGEVFPFRDSNRTVMLERDVI 313

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARR---------------FFEVTRDNIGKP 293
           ++G ++  AT  +D      V        GAR                F E   + IG  
Sbjct: 314 VTGDNVTNATVTYDQNGRPAVSVTLDSAGGARMGDITKNNLNHPMGVLFIEQKSEPIGYE 373

Query: 294 LAVVLDGRVLTAPVI--------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           +             +           + S + Q +G  +   A  LA +LRAG+L   + 
Sbjct: 374 MVDGEQVMQYRNYEVKEVISLANIAGVFSSQFQTTGLDSSAEASELALLLRAGALAAPMT 433

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            VEER VG  LG+++I KG  ++V G  L+++FM+V Y  +G+ A  ++ +N++L +A++
Sbjct: 434 FVEERTVGPSLGAENIAKGFTSVVIGFALVIVFMVVFYKVFGIFASVALSMNLVLVIAIM 493

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           SLLGATLTLP IAGIVL +G+AVD+N+L+  RI+EE    + +  ++D G+ RA+ TI D
Sbjct: 494 SLLGATLTLPGIAGIVLTVGMAVDANVLIFSRIKEELNAGKPIQTAIDAGYGRAFLTILD 553

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +N+T  I  ++L+  G G+V+GFA+T+ + IL SMFTA+ + RA+   +   + +K + I
Sbjct: 554 ANVTTFIVAIILYAIGTGSVKGFAVTLSVGILTSMFTAVLLTRALTNLVYGGRNLKKLPI 613



 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 101/282 (35%), Gaps = 5/282 (1%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
            +S+         +     N      G + +   +       V    +   +  ++    
Sbjct: 333 AVSVTLDSAGGARMGDITKNNLNHPMGVLFIEQKSEPIGYEMVDGEQVMQYRNYEVKEVI 392

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE-IVGPKISRELIRKG 669
                  +   Q+Q     +     E+        +        E  VGP +  E I KG
Sbjct: 393 SLANIAGVFSSQFQTTGLDSSAEASELALLLRAGALAAPMTFVEERTVGPSLGAENIAKG 452

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              V+I    +++++ + +K  F + A   L +++   +   +L G    L  +A ++  
Sbjct: 453 FTSVVIGFALVIVFMVVFYKV-FGIFASVALSMNLVLVIAIMSLLGATLTLPGIAGIVLT 511

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G +V+  V+++ R+++ +         +  ID          +  ++  FI  + +   
Sbjct: 512 VGMAVDANVLIFSRIKEELNA---GKPIQTAIDAGYGRAFLTILDANVTTFIVAIILYAI 568

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           G   +  FA+ ++ GI+ +  +++ +   +   +Y  R    
Sbjct: 569 GTGSVKGFAVTLSVGILTSMFTAVLLTRALTNLVYGGRNLKK 610



 Score = 40.8 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF 35
          +   W  +L + +   G+  +LPN  P     + 
Sbjct: 4  KYPLWKYLLIAAVLLFGIYYSLPNLYPNDPAIQI 37


>gi|306816391|ref|ZP_07450523.1| multidrug efflux system protein [Escherichia coli NC101]
 gi|331649067|ref|ZP_08350155.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           M605]
 gi|305849956|gb|EFM50415.1| multidrug efflux system protein [Escherichia coli NC101]
 gi|331042814|gb|EGI14956.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           M605]
          Length = 1034

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|293392516|ref|ZP_06636836.1| acriflavine resistance protein B [Serratia odorifera DSM 4582]
 gi|291424918|gb|EFE98127.1| acriflavine resistance protein B [Serratia odorifera DSM 4582]
          Length = 1048

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/574 (11%), Positives = 157/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIVMLAGVLAIM-----KLPIAQYPTIAPPA-------------VTISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      +ITL+F      +    +V  
Sbjct: 50  PGADATTVQDTVTQIIEQNMNGIDNLMYMSSSSDSSGSVQITLTFESGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  L         ++++    D       + +  +     D I  S
Sbjct: 110 KLSLATPLLPQEVQQQGLKVEKSSSSFLMVAGFVSDDPNMTQDDIADYVASNIKDPISRS 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP+++     TT  ++      NN       G        
Sbjct: 170 SGVGEVQLFGAQ-YAMRVWLDPNKMNNFQLTTTDVTSAITEQNNQIAAGQLGGMPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        I +     
Sbjct: 229 QLNASIIAQTRL-------------KSPEEFGKILLKVNSDGSQVRLKDVARIERGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L          +           
Sbjct: 276 SVTARFNGKPAAGLGIKLATGANALNTAAGVKEELGKLAPFFPQGMKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SINEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMDQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +     +K +          
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-----LKPVAKGDHGVKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++              +   L  +
Sbjct: 511 FFGWFNRMFEKSTHHYTDSVANILRSTGRYLLIY 544



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   ++ +        L        +++     ++    K+    
Sbjct: 258 SQVRLKDVARIERGAENYSVTARFNGKPAAGLGIKLATGANALNTAAGVKEELGKLAPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPFVKISINEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  V  ++      +PMA +GGS       F+I +   + ++   ++ +   +   
Sbjct: 436 DQIQGALVGIALVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 75/234 (32%), Gaps = 8/234 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +          + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 790  VRGDSGQMVPFSSFATAKWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMNLMEELASK 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  + +     +   W      +  L L
Sbjct: 850  LPSGVGYDWTGMSYQERLSGNQAPSLYAISILVVFLCLA---ALYESWSIPFSVMLVLPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    + G+  ++     +LT IG S  + +++ +  +  M+         +   
Sbjct: 907  GVIGALLAATMRGMNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LIESTL 964

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
            +++   L   + TS+A  + VLP+ +    G     +    +  G++ A   +I
Sbjct: 965  EAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018


>gi|226306415|ref|YP_002766375.1| protein-export membrane protein SecF [Rhodococcus erythropolis PR4]
 gi|226185532|dbj|BAH33636.1| protein-export membrane protein SecF [Rhodococcus erythropolis PR4]
          Length = 407

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 140/314 (44%), Gaps = 12/314 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     A + +  R +  G++      ++  +   G  +GIDF+GG ++   A
Sbjct: 40  KHSWLSRLYTGTGAFEVVGRRRFYYGLTGALVAIALLSIILRGFTFGIDFEGGSRIQFPA 99

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKK 640
              V+ S V +        +       G                   +  Q+ + +  + 
Sbjct: 100 EGGVETSEVETVYSDTLGFEPVSVQTVGSGASATVQIRSETLNATQINDLQSALFDEFQP 159

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K     P +   +   V      ++ +K ++ +I+  + + IYI IRF+   A+ AI  L
Sbjct: 160 KDKNGNPSAQAISFADVSETWGGQITKKALIALIVFLVIVSIYIAIRFERDMAVAAIVAL 219

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFR 758
             DI  T G ++L G E     V  +LT++G+S+ D VVV+D++ +N +  L+ T  ++ 
Sbjct: 220 FFDIIVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVVVFDKVEENTRGVLHLTRRTYG 279

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSI 813
           +  + ++N+TL RS+ T++ + + V+ + V      G   +   A+    GI+V A SSI
Sbjct: 280 EQANLAVNQTLMRSINTTVISVLPVIALMVVAVWMLGVGTLKDLALVQLVGIIVGAYSSI 339

Query: 814 FIAAPILLFIYDWR 827
           F A P+L+ + +  
Sbjct: 340 FFATPLLVSMKERW 353


>gi|209920738|ref|YP_002294822.1| acriflavine resistance protein [Escherichia coli SE11]
 gi|300817478|ref|ZP_07097694.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 107-1]
 gi|300824979|ref|ZP_07105078.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 119-7]
 gi|307314977|ref|ZP_07594565.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli W]
 gi|309793846|ref|ZP_07688272.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 145-7]
 gi|331670090|ref|ZP_08370935.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           TA271]
 gi|331679339|ref|ZP_08380011.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           H591]
 gi|209913997|dbj|BAG79071.1| acriflavine resistance protein [Escherichia coli SE11]
 gi|300522545|gb|EFK43614.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 119-7]
 gi|300529776|gb|EFK50838.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 107-1]
 gi|306905560|gb|EFN36092.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli W]
 gi|308122803|gb|EFO60065.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 145-7]
 gi|315062565|gb|ADT76892.1| multidrug efflux system protein [Escherichia coli W]
 gi|323183025|gb|EFZ68424.1| inner membrane protein [Escherichia coli 1357]
 gi|323376848|gb|ADX49116.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli KO11]
 gi|324020748|gb|EGB89967.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 117-3]
 gi|331063003|gb|EGI34917.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           TA271]
 gi|331073404|gb|EGI44727.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           H591]
          Length = 1034

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNSDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|284006430|emb|CBA71669.1| multidrug efflux protein [Arsenophonus nasoniae]
          Length = 1039

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/694 (10%), Positives = 186/694 (26%), Gaps = 55/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIITMLAGLLAII-----KLPVAQYPTIAPP-------------SISIVATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +     +   S          +TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLVYMSSTSDAMGNMSLTLTFEAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++          +  + +  +     D I   
Sbjct: 110 KLQLAMPLLPQEVQQQGIHVNKSTGSFLMVVAFISKNGSMNQEDIADYVNSHIKDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L +    T  +     + NN       G        
Sbjct: 170 KGVGETQLFGTQ-YAMRIWLDPDKLVKYNMATQDVINAIKIQNNQVAAGQLGGTPPIPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 RLNVSIIAQTRLNNAE-------------QFANILLRVNPDGSQVRLKDVAVVELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A +          +           
Sbjct: 276 SIQAKYNGTASAGIGIKLATGANALDTAKAVRATLAEMELFFPNGLEIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV++V+++ +   +  L+   ++ + ++ T A+LS +G ++   ++
Sbjct: 336 SINEVVKTLIEAIMLVVVVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAMGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLSPKEATKKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  S+++S+  A+ +  A+   I           +       
Sbjct: 456 MAFFGGSTGAIYRQFSVTIVASMVLSVLVALILTPALCATILKPIPKGSHGKQTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + I         + V   IL +  +   L         + +G +   V
Sbjct: 516 NRTFEKSAHHYTNSIGHMLRGTGRYLVIYVILVAGMAFLFLKLPSSFLPEEDQGVLLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                       + L  +     +      ++N              Q + + +    + 
Sbjct: 576 QLPPGSTQEQTVAVLNDIDQYYRTK----EKENVKSVFTVSGFGFAGQGQNMGLAFVVLQ 631

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +     + ++        +     K    +I S 
Sbjct: 632 DWKERHSDKSHVSQIINRANLAFSKIQEAIIFSF 665



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   I  +        +        +++   + +     ++    
Sbjct: 258 SQVRLKDVAVVELGAENYSIQAKYNGTASAGIGIKLATGANALDTAKAVRATLAEMELFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + + +++ +++  + +   L     + + + 
Sbjct: 318 PNGLEIVYPYDTTPFVKISINEVVKTLIEAIMLVVVVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFAILSAMGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +PMA +GGS       F++ +   +V++   ++ +   +
Sbjct: 436 GQIQGALVGIALVLSAVFIPMAFFGGSTGAIYRQFSVTIVASMVLSVLVALILTPAL 492



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 72/196 (36%), Gaps = 7/196 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            + +         L      E  G      L       + +IS I + + +   ++ W   
Sbjct: 841  DAMLLMEQLTEKLPEGIGYEWTGMSYQERLSGNQAPALYVISLIVVFLCLAALYESWSIP 900

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L F ++ G+E ++     +LT IG S  + +++ +  +  M+    
Sbjct: 901  FSVMLVVPLGVIGALLFTSIRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 960

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + VLP+ +    G     S    +  G++ A +
Sbjct: 961  G--LIEATLDAVKMRLRPILMTSLAFMLGVLPLVISNGAGSGAQNSVGTGVLGGMIAATT 1018

Query: 811  SSIFIAAPILLFIYDW 826
             +I+      + I   
Sbjct: 1019 LAIYFVPVFFVVIRRR 1034


>gi|90424272|ref|YP_532642.1| preprotein translocase subunit SecF [Rhodopseudomonas palustris
           BisB18]
 gi|90106286|gb|ABD88323.1| protein translocase subunit secF [Rhodopseudomonas palustris
           BisB18]
          Length = 334

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 118/302 (39%), Positives = 189/302 (62%), Gaps = 6/302 (1%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +  L    ++PD     F + R     IS L SI +I L FTHGLN+GIDFKGG  L V 
Sbjct: 22  MGWLPSLRIVPDDTHFDFTQFRRISFPISALLSIAAITLFFTHGLNFGIDFKGGTLLEVQ 81

Query: 585 A-NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           A     D+  +R+ L +L +GD+  Q F G  + L+R+  QPG   AQ   ++ V+  + 
Sbjct: 82  AKTGAADIPAMRATLSALGLGDVQLQQFGGPADVLIRVAEQPGGDAAQQEAVQKVRAAL- 140

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   +  E+VGP++S EL+  G++G++++  ++LIY+W RF+W FALGA+   + D
Sbjct: 141 --GDNVEYRRVEVVGPRVSSELLAYGMLGLMLAIFSILIYLWFRFEWQFALGAMIANVHD 198

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T+GF ++  ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y   +    L+++
Sbjct: 199 IVLTIGFMSITQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNE 257

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822
           SIN TL RS+ T +   +++L + ++GG  I SF   M FG ++V   +SIFIAAPIL++
Sbjct: 258 SINSTLSRSIITHVTVTLALLALLLFGGHAIHSFTAVMMFGVVLVGTYTSIFIAAPILIY 317

Query: 823 IY 824
           + 
Sbjct: 318 LG 319


>gi|260424674|ref|ZP_05732898.2| protein-export membrane protein SecF [Dialister invisus DSM 15470]
 gi|260402780|gb|EEW96327.1| protein-export membrane protein SecF [Dialister invisus DSM 15470]
          Length = 303

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/290 (27%), Positives = 142/290 (48%), Gaps = 1/290 (0%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                  +  R     +S L  + SI  +     N+GIDF GG  L +  ++ V +  VR
Sbjct: 4   MFKNFDVIAKRKLWFSVSGLLVLLSIMSIIMFRFNWGIDFTGGTILELGFSQNVTVEQVR 63

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + +    +     Q   G  +                   + +   I   V  + ++  E
Sbjct: 64  NGIREDGLETAVIQ-LSGSIDGESGNDVIIRTRNLSANESQAIIDHINTKVGTAEVKRIE 122

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  I  E+ +  ++ V++S  AM++Y+ IRF+   A  AI  ++ DI   LG FA F 
Sbjct: 123 TVGAVIGSEVTKNTLLNVLLSFGAMILYMTIRFEHRIAFAAIVAIVHDILMVLGVFAFFH 182

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +E + + +AA+LT++GYS+N+ VV++DR+R+ +  +  + SF  L + SI++T+ RS+YT
Sbjct: 183 LEVDASFLAAILTVLGYSMNESVVIFDRIREAIHTHRRTDSFAILANDSIHQTIRRSMYT 242

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +     V  + ++GG    +FA+ M  G +  A SS+ +A  I +  ++
Sbjct: 243 LITTLFCVTSLYLFGGDTTKNFALVMLVGFISGAYSSVCVATSIWVTWHE 292


>gi|332974531|gb|EGK11451.1| protein-export membrane protein SecF [Kingella kingae ATCC 23330]
          Length = 313

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 150/303 (49%), Gaps = 1/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS+   I ++  LFT GLN  ++F GG  + V       
Sbjct: 1   MELFHFKRDIPFMSYGKLTTFISLATFILAVVFLFTRGLNLSVEFTGGTLMEVEYASQQG 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             + +       +     Q      N  + ++      V+  ++   V +++ +     +
Sbjct: 61  ADLNKVRHSLETLQLGEVQVQALGTNKHIMIRLPNKADVSSAQLSNQVMEQLKKESSDVS 120

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP +  EL+  G++ + +  I ++ Y+ +RF+W FA+ AI   + DI   LG 
Sbjct: 121 LRQVEFIGPAVGDELVSNGLIALGMVIIGIIAYLAMRFEWRFAVSAIIANLHDIVIILGC 180

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769
           FA F  EF+LT +A VL ++GYSVN+ VVV+DR+R+N    +  + +  +LID +I  T+
Sbjct: 181 FAFFRWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENFLKGSMRNKTVPELIDNAITATM 240

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           GR+V T  +    V+ M V+GG+ +  FA  +  GIV    SS+ +A+P+LL     R  
Sbjct: 241 GRTVITHGSTEAMVVSMLVFGGAALHGFATALTIGIVFGIYSSVLVASPLLLMFGLNRNN 300

Query: 830 NAR 832
             +
Sbjct: 301 VMK 303


>gi|192291800|ref|YP_001992405.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris TIE-1]
 gi|192285549|gb|ACF01930.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris TIE-1]
          Length = 1076

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 184/692 (26%), Gaps = 47/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L ++I   GLL      +P   +  +P   P   +                  
Sbjct: 10  RPIFAGVLSAVIFLAGLLS-----MPVLPISEYPEVAPPTIV---------VSAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                + ++F      +     V   +  
Sbjct: 56  PKVIAETVSTPIEEQINGVENMLYMSSQATTDGKMTLNVTFRLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T        ++                   +    D++       
Sbjct: 116 AEPRLPAEVRALGITTIKSAPDLTMVVHLMSPNDRYDMTYLRNYAVLNVKDRLARIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   + A +       N        G          Q 
Sbjct: 176 QVQLFGSGDYSMRVWLDPQKVAERGLSPADVVREIRAQNVQAAAGQVGSSPGEPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I  +  G           I    A      
Sbjct: 236 SVNAQGRLQTEE-------------EFGEIIVKNGAGGEVVRLRDVARIELGAADYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 283 LLNNKSAVAIPIFQSPGSNAIQISDNVRATMKELKQNMPDGVSYDIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ M +   +  ++   ++ ++V+ T A++ + G ++   ++ G+V
Sbjct: 343 VIHTLLEAIALVVLVVIMFLQTWRASIIPLIAVPVSVVGTFAVMHVFGFSINALTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +      +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIERGLGPKDAAYQAMREVTGPIIAIALVLVAVFVPLAFIT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++        +       L    +
Sbjct: 463 GLTGQFYKQFALTVAISTVISAFNSLTLSPALAALLLKGHDAPKDALTRFMDKTLGWFFV 522

Query: 539 AIQFMRAR--------------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                 AR                 VG+ +   +        H +  G       Q  V 
Sbjct: 523 RFNRFFARSSEAYGRGVKRVVSRRAVGMGLYLLLVGATFYLFHAVPSGFVPGQDKQYLVG 582

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +  D + +    + ++      Q   G +N +             +    +     + 
Sbjct: 583 FAQLPDGATLDRTEDVIRRMGEIAQQEPGVENSIQFPGLSINGFTNSSNSGIVFIGLKSF 642

Query: 645 IVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
                   +   +   ++++   I+   + + 
Sbjct: 643 DERKDKSLSGNAIAMSLNKKFAGIQDAFIAMF 674



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 17/232 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L +     I      G     +    +      +  + + V   I 
Sbjct: 270 RIELGAADYALRSLLNNKSAVAIPIFQSPGSNAIQISDNVRATMKELKQNMPDGVSYDIV 329

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   +            + +L+ I     W  ++  +  + + 
Sbjct: 330 YDPTQFVRASIEAVIHTLLEAIA-----------LVVLVVIMFLQTWRASIIPLIAVPVS 378

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T     +FG   N   +  ++  IG  V+D +VV + + +N+      +  +D   +
Sbjct: 379 VVGTFAVMHVFGFSINALTLFGLVLAIGIVVDDAIVVVENVERNI---ERGLGPKDAAYQ 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           ++ E  G  +  ++      +P+A      G     FA+ +A   V++A +S
Sbjct: 436 AMREVTGPIIAIALVLVAVFVPLAFITGLTGQFYKQFALTVAISTVISAFNS 487



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    +   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLSIIMIVPMGLLAAMFGVWVSKGDNNVFTQIGLIVLVGLSAKNAILIVEFARELE 961

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                          ++    L   + TSMA  + V+P+      G  +  +  + +  G+
Sbjct: 962  FAGRK---PIQAAIEASRLRLRPILMTSMAFIMGVVPLVTSTGAGSEMRHAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +   +  IF      + + 
Sbjct: 1019 IGVTAFGIFFTPMFYVLLR 1037


>gi|153007721|ref|YP_001368936.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151559609|gb|ABS13107.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 1049

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/685 (11%), Positives = 190/685 (27%), Gaps = 46/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPIAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +     D             +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFSDSDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 SGVGDVQLLGNIDYSMRIWLRPDKLAQYNLTPSDVSTAIQEQNAQFAAGRFGDQPDPQAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +             P        I      A          +       
Sbjct: 230 PFTYTATTQGRL-------------PDAAAFENIILRSSSNAATLRLKDVARVELGTESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 277 LVDSNLNGTSAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYSIPFDTTKFIKV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 337 SIEEVIHTFIEAIILVVLVVFIFLQNWRATLIPIIAVPISIIGTFAGMYVLGFSINLLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      ++ S   +           +    +      + 
Sbjct: 397 FGLVLAIGIVVDDAIVVLENVERIMTTDKLSPRKAAIKAMGEVTGPVVAIVLVLCAVFIP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINP 527
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++          +  +   
Sbjct: 457 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPMLPFRIFNRFF 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     RA    +  + L            G     + +G +    +   
Sbjct: 517 ERVTDGYSRGVRFFLKRAAIGLIIFAGLLGATYYLFERVPGSLLPDEDQGYLFSVAVLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L    + L+            +             G   +   +  M+K       P
Sbjct: 577 AASLERTTAVLDQASANIRKSPAVESVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTP 636

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            +  +N       ++  +    ++ 
Sbjct: 637 ETDARNLPGAIMAMNSGIKDGLVLA 661



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  S   +T         E+I   I  +I+  + + I++ 
Sbjct: 302 NTMELIQNRMNELKASFPAGIDYSIPFDTTKFIKVSIEEVIHTFIEAIILVVLVVFIFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  I  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 362 ---NWRATLIPIIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  V   +      +P+A  G   G +   FA+ +A
Sbjct: 418 -ERIMTTDKLSPRKAAIKAMGEVTGPVVAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 476

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 477 ISVTLSGLVALTLTPAL 493



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 7/167 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G   +I   + + + +  ++ +W   L  IT +   I   L    L G+  ++     +
Sbjct: 868  TGTQAMIFGLVMVFLILAAQYERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGL 927

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG +  + +++ +     +    T  S  +    +        V TS+A  + V+P+
Sbjct: 928  VTLIGLAAKNAILIVEFA---VLERETGKSAIEAAASAARLRFRPIVMTSLAFILGVVPL 984

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            A+    G +   S    +  G++ A   + F        I     K 
Sbjct: 985  AISTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKR 1031


>gi|317484530|ref|ZP_07943439.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila
           wadsworthia 3_1_6]
 gi|316924248|gb|EFV45425.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila
           wadsworthia 3_1_6]
          Length = 1057

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 174/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +  L        + ++PS  P               + +    
Sbjct: 8   RPVFAWVIAIIIMLAGGISIL-----NLPISQYPSIAPPT-------------IGITAQY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S    Q +ITL+F+     +    +V  
Sbjct: 50  PGASAQTVQDTVTQVIEQNMNGLDYLLYMSSTSDSSGQAQITLTFSADANPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         + +     +       + +  +     D I   
Sbjct: 110 KLQLATPLLPQEVQRQGISVAKRGANFLKVYAFVSEDGSMDNADIADYVATNLKDAISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +               DP +L+      + +       N        G        
Sbjct: 170 SGVGEVSLFGSQYGM-RIWLDPHKLQSYKLMPSDVINAINAQNAQVSAGQLGGTPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                 +       
Sbjct: 229 QMNLAISVQERL-------------QTPEQFGNVILRTNPDGSLIRVKDVARVELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T            A        +           
Sbjct: 276 STLSRYNGKPATGIAVKLATGANALETASNIDDYLKGAEAFFPQGLKAVYPFDTTPVVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +LS  G ++   ++
Sbjct: 336 SIHEVVKTLGEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     +++ S   +      +    +    +      + 
Sbjct: 396 FAVVLAIGLLVDDAIVVVENVERVMSEDKLSPKEAARKSMDQITGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++++S+  AI +  A+   +           ++      
Sbjct: 456 MAFFGGSVGVIYRQFSVTIVSAMVLSVVVAIVLTPALCATMLKPIGGDHVHSQHGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    S        ++    RA  + +   +L                  + +G +   +
Sbjct: 516 NRWFDSATLRYQSGVSYVIRRAGRFMLIYLVLIGGLVFMFKTLPTGFLPDEDQGMLFAQI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         LE ++   +  +    +    V      G+          +K    
Sbjct: 576 QLPTGATQEETTKVLERVERYFLEEEKESIDSLMGVLGFSFAGNGQNMAMAFVRLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              P   +            ++    +  
Sbjct: 636 RQDPSLKVDAVSKRAMAAFSKIRNAQVFA 664



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 95/273 (34%), Gaps = 6/273 (2%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+     ++ +     L     F   I         + +  V       +      + 
Sbjct: 222 TPSVPGQQMNLAISVQERLQTPEQFGNVILRTNPDGSLIRVKDVARVELGSESYSTLSRY 281

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                  +        +++     ++   K      P             + +  I + +
Sbjct: 282 NGKPATGIAVKLATGANALETASNIDDYLKGAEAFFPQGLKAVYPFDTTPVVKISIHEVV 341

Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +  + + + + +++  + +   L     + + +  T G  + FG   N   + AV+  
Sbjct: 342 KTLGEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLSAFGYSINTLTMFAVVLA 401

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + +     +    +S ++   KS+++  G  V  +M      +PMA +
Sbjct: 402 IGLLVDDAIVVVENV--ERVMSEDKLSPKEAARKSMDQITGALVGIAMVLSAVFIPMAFF 459

Query: 790 GG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
           GG   VI   F++ +   +V++   +I +   +
Sbjct: 460 GGSVGVIYRQFSVTIVSAMVLSVVVAIVLTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 64/184 (34%), Gaps = 8/184 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
              + +       L      E  G      L       +  +S + + + +   ++ W   
Sbjct: 837  TAMLEMEKLASQLPQGIGYEWTGLSYQERLSGSQAPALFALSILVVFLCLAALYESWSVP 896

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               I  + L +   LG   +  +  ++     +L  IG S  + +++ +  ++   L+  
Sbjct: 897  FAVILVVPLGVLGALGAANMRMLSNDVYFQVGLLATIGLSAKNAILIVEFAKE---LHDK 953

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + +LP+A+    G     +    +  G   A +
Sbjct: 954  GGDLIEATIEASRMRLRPILMTSLAFLLGILPLAISTGAGAGGQNAIGTGVMGGTFAATA 1013

Query: 811  SSIF 814
              IF
Sbjct: 1014 LGIF 1017


>gi|300928699|ref|ZP_07144217.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 187-1]
 gi|300463288|gb|EFK26781.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 187-1]
          Length = 1034

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D       + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDITQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|294635447|ref|ZP_06713935.1| acriflavine resistance protein B [Edwardsiella tarda ATCC 23685]
 gi|291091180|gb|EFE23741.1| acriflavine resistance protein B [Edwardsiella tarda ATCC 23685]
          Length = 1038

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL           ++++P   P               + +    
Sbjct: 8   RPIFAWVIAIIISLAGLLAI-----RDLPIEQYPDLAPPT-------------VRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAQTLENTVTQIIEQNMTGLDGLMYMSSQSSSSGSASITLTFQSGTDPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     KL  + ++  +  +   + S++              + +  +     D I   
Sbjct: 110 QLSAATRKLPQEVQQQGIRVSKSGDSSLMTVAFVSTDGSMDRQDIADYVASNLQDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP +L Q   TT  +       N+       G        
Sbjct: 170 EGVGSVDAFGSQ-YAMRIWLDPIKLNQFALTTQDVVQAIKSQNSQIAVGQIGATPALPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      +       
Sbjct: 229 ALNATLMAQSQL-------------QTPKQFRAITLRVNSDGSLVTLGDVAQVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +   T        A L                      
Sbjct: 276 DYLSRFNGKPATGMSIKLASGANELATDARVKAKLAQLEPYFPHGLKVEYAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +V+++ +   +  L+   ++ + ++ T A+L  +G ++   ++
Sbjct: 336 AIQDVVKTLFEAILLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVLLAMGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSAREATRKSMDQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMI----------FIIRYKKMKSI 523
           + FFGG      R F+IT+  +++ S+  A+ +  A+               +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMIFSVLVALILTPALCATLLRPIDKTQLHGKKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + +      A    +   ++ +      L        ++ +G     +
Sbjct: 516 NRTFERSALRYENGVERVVRNAGRSMLLYLLILAGLGTLYLHLPTSFLPLEDRGVFMTQI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++   +  +  D +  F +      G+     R+   +K    
Sbjct: 576 QLPVGSTQQETLKVVEKVEHYLLVDEGKDVQSVFSIVGAGPGGNGQNVARMFVRLKPWEQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    +  
Sbjct: 636 RPNDSDSAAAIVERASKAFAQIREARVFA 664



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 83/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +        +        + +A    ++    ++    P 
Sbjct: 260 VTLGDVAQVELGAEKYDYLSRFNGKPATGMSIKLASGANELATDARVKAKLAQLEPYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GLKVEYAYETTPFVKAAIQDVVKTLFEAILLVFLVMYLFLQNLRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +S R+   KS+++
Sbjct: 380 FAVLLAMGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSAREATRKSMDQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +GG+       F+I +   ++ +   ++ +   +   + 
Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMIFSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 R 498



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 46/400 (11%), Positives = 115/400 (28%), Gaps = 16/400 (4%)

Query: 440  EENRKNQSVFCSLDMGFSRAYSTIFDS-------NITALIATVVLFFFGGGAVRGFAITM 492
            E+   +     ++    S+A++ I ++       +  + + +   F        G     
Sbjct: 634  EQRPNDSDSAAAIVERASKAFAQIREARVFASSPSAISGLGSTAGFDMELEDHAGLGHDA 693

Query: 493  GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
             +     +  A +   A+                 + +       + I  +         
Sbjct: 694  LMQARDQLLAAAAKQPALTRVRHNGMDDSPQLQVNIDQRKAQALGVNIDDINDTLKTAWG 753

Query: 553  SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            S   +              G      +   +      +         +    D  + +  
Sbjct: 754  STYVNDFLNRGRVKKVYVQGEAAYRMLPSDIDKWYVRNAQGAMVPFSAFASTDWRYGSPR 813

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             E+          G++         +      +  L +    E  G      L       
Sbjct: 814  LERYNGAAAVEIVGEAAPGISTGHAMDIMEQLVSELPSGFGLEWTGMSYQERLSGAQAPA 873

Query: 673  V-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +  +S + + + +   ++ W      +  + L +   +    L G+E ++     +LT+I
Sbjct: 874  LYALSLLVVFLCLAALYESWSIPFSVMLVVPLGVLGAVCATWLRGLENDVYFQVGLLTII 933

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G S  + +++ +   +   L            ++    L   + TS+A    VLP+A   
Sbjct: 934  GLSAKNAILIVEFANE---LNRNGKDLLAATLQACRLRLRPILMTSLAFIFGVLPLATSH 990

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              G +   +    +  G+V A   SI+   P+   +   R
Sbjct: 991  GAGSASQHAVGTGVLGGMVAATLLSIYFV-PLFFILVRRR 1029


>gi|195952503|ref|YP_002120793.1| protein-export membrane protein SecF [Hydrogenobaculum sp. Y04AAS1]
 gi|195932115|gb|ACG56815.1| protein-export membrane protein SecF [Hydrogenobaculum sp. Y04AAS1]
          Length = 293

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 88/298 (29%), Positives = 151/298 (50%), Gaps = 11/298 (3%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I F++ R++   ISI+  + S   L+T GLN G+DF GG  L V    PV +  V
Sbjct: 1   MRIKYIHFIKYRYYSYVISIILILLSAFSLYTRGLNLGLDFTGGTMLEVRFQTPVSVKQV 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              L  + I D   Q  +     +     +             + +K    +    +   
Sbjct: 61  DDALYKVDIKDAVVQRTNTGDIIVKIRVGEKPS----------LVEKALNSIGSFQLLQR 110

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E +G  +S EL +K +  VI + + +LIY+  R+++ FALG I  L  D+   +G ++  
Sbjct: 111 EDIGSVVSGELRKKAVWAVITALVGILIYLSFRYEFLFALGGILALAHDVFIVVGAYSWT 170

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             E +L  +A++L + GYS+ D VVV+DR+R+N+KL    +   ++I+ S+N+ + R++ 
Sbjct: 171 YKEVSLDVLASILVVAGYSITDTVVVFDRIRENLKL-RKGMDLSEIINLSVNQNIVRTIM 229

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           TS   F+S L + ++GGSV+   +     G+VV   SSIF+A+ ++L I     K  +
Sbjct: 230 TSSTVFLSSLGLYLFGGSVLSDISFAFLIGVVVGTLSSIFVASALVLDIKILLRKIKK 287


>gi|187478148|ref|YP_786172.1| acriflavine resistance protein B [Bordetella avium 197N]
 gi|115422734|emb|CAJ49262.1| acriflavine resistance protein B (multidrug efflux system
           transmembrane protein) [Bordetella avium 197N]
          Length = 1055

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 63/547 (11%), Positives = 149/547 (27%), Gaps = 38/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L        + ++P+  P              ++      
Sbjct: 8   RPVFAWVIAVVLMMAGGLSIL-----SLPVAQYPNIAPPAI---------AINVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  ITL+F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQMNGIDNMEYISSESNSDGSVAITLTFRQGTNPDTAQVQVQNKLAV 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  ++++            + +  +     D I  +    
Sbjct: 114 AQPLLPQEVQQQGIRVTKATKNFLIVAGFVSSDGSMSKSDLADYVASYVQDPISRTRGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L     + + ++      N        G            
Sbjct: 174 DFQLFGAP-YAMRVWLSPEKLNNYKLSASDVTNAIKEQNVQVSSGQLGGLPAARGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +                 +    +        +        I           
Sbjct: 233 TVIGPTRL-------------QTPEEFGDILLKVNTDGSQVRLRDVGKIELGEQSYAIDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T +        L+    P    +           S   
Sbjct: 280 FYNRKPASGLAVKLASGANALDTAQAVRDTINSLKPYFPPGMEVVYPYDTTPFVSLSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 340 VIHTLIEAIVLVFLVMYLFLQNFRATLIPTLAVPVVLLGTFAVLAAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPKAATRKSMGQITGALIGIAMVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  S+++S+  A+    A+         +K I              
Sbjct: 460 GGSTGVIYRQFSITIVSSMVLSVVVAVVFTPALCAT-----MLKPIPKGHHGTKKGFFGW 514

Query: 538 IAIQFMR 544
               F R
Sbjct: 515 FNRMFER 521



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 73/237 (30%), Gaps = 9/237 (3%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                 G      ++G   F ++ +   G S  +                           
Sbjct: 806  ADWTYGPQKLNRYNGVPAFNIQGEAAAGRSSGEAMREMERLAAKLPPGVGFEWTGLSFEE 865

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             +   +      + +I+  + +     +   W      +  + L +   L    + G+  
Sbjct: 866  RRSGAQAPALYAISLIVVFLCLA---ALYESWSIPTAVMLVVPLGVLGALLATLMRGLSN 922

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++     +LT +G +  + +++ +  +     Y    S  +    +  + L   + TS+A
Sbjct: 923  DVYFQVGLLTTVGLAAKNAILIVEFAKDY---YEQGASLVEAAVHAARQRLRPILMTSLA 979

Query: 779  AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              + V+P+A+    G     +    +  G++     +IF      + +        R
Sbjct: 980  FVLGVVPLAISNGAGSGSQHAIGTGVIGGMLSGTFLAIFFVPLFFVLVLRLFKVRRR 1036



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 63/176 (35%), Gaps = 6/176 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
              + +      +    P                  I   I  +I + + + + +++  +
Sbjct: 301 DTAQAVRDTINSLKPYFPPGMEVVYPYDTTPFVSLSIEGVIHTLIEAIVLVFLVMYLFLQ 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + +  T    A FG   N   +  ++  IG  V+D +VV + +    
Sbjct: 361 NFRATLIPTLAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
            +    +S +    KS+ +  G  +  +M      +PMA +GGS       F+I +
Sbjct: 419 VMAEEGLSPKAATRKSMGQITGALIGIAMVLSAVFIPMAFFGGSTGVIYRQFSITI 474


>gi|78192433|gb|ABB30249.1| AdeY [Acinetobacter sp. 4365]
          Length = 1058

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 64/554 (11%), Positives = 152/554 (27%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGIDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNSLSDSDIKDYVNSSIKEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N+       G        
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T E      + LR        + +          
Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPTGLADKLAYDTTPFIRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T         IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLIEAVVWYFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + ++     +      +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATSRSMQQISGALIGITSVLTAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A++   A+   I++         N +   F 
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKAPSNNIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                    M   +
Sbjct: 516 RGFNNGFDRMSHSY 529



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 10/235 (4%)

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 + +   G    +         + A    L  ++K     +      +T      
Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPTGLADKLAYDTTPFIRL 335

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
               ++   I  V+   I M +++     W   +     + + +  T     +FG   N 
Sbjct: 336 SIESVVHTLIEAVVWYFIVMFLFLQ---NWRATIIPTLAVPVVVLGTFAVINIFGFSINT 392

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV-YTSMAA 779
             + A++  IG  V+D +VV + +     +            +S+ +  G  +  TS+  
Sbjct: 393 LTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATSRSMQQISGALIGITSVLT 450

Query: 780 FISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               +PMA +GG   VI   F+I +   +V++   ++     +   I      N 
Sbjct: 451 -AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNK 504



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 75/232 (32%), Gaps = 17/232 (7%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-- 672
                             +       ++I   +P   +Q  +     +S E    G     
Sbjct: 821  NGVSSVNIQGTPAPGVSSGDSMKAMEEIIAKLPSMGLQGFDYEWTGLSLEERESGAQAPF 880

Query: 673  -VIISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALF-----GIEFNLTAV 723
               +S + + + +   ++     F++  +  L +     L +  +       +  N+   
Sbjct: 881  LYALSLLIVFLCLAALYESWSIPFSVLLVVPLGIIGAIVLTYLGMIIKGDPNLSNNIYFQ 940

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             A++ +IG S  + +++ +  ++   L        +    +    L   + T++A    V
Sbjct: 941  VAMIAVIGLSAKNAILIVEFAKE---LQEKGEDLIEATLHAAKMRLRPIIMTTLAFGFGV 997

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            LP+A+    G     S    +  G++ A    IF      ++I        +
Sbjct: 998  LPLALSTGAGAGSQHSVGYGVLGGVLSATFLGIFFIPVFYVWIRSIFKYKPK 1049


>gi|317402510|gb|EFV83077.1| membrane protein [Achromobacter xylosoxidans C54]
          Length = 1038

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/543 (12%), Positives = 159/543 (29%), Gaps = 39/543 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  IGL+        +  +  +P                      +  
Sbjct: 9   QRPVFASVLSLVIVLIGLIS-----YSRLTVREYPKIDEPIV---------SVDTTYKGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++   +     R  ++ I + F  SR  +  A +V   +  
Sbjct: 55  SPEVIESQVTKPLEDQLAGIEGVDVMTSRSRSERSLINIKFNLSRNPDAAAAEVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  + ++         I+            AI+ S  I R    ++ +     
Sbjct: 115 ARRFLPDEIDEPIIGKVEADSQPIIYIAVES--GSYSAIQTSDYINRYIKTRLSVLPGAA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    D  +L     T   +       N          R    S  +  
Sbjct: 173 EVRVFGERLPSMRIYVDRDKLAAYGLTVQDVESALRSQNVEIPAGRIESRAREFSVVSST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                      ++    +            +    A      
Sbjct: 233 DLQTPAQFE--------------------NVIVANVKGYPVRLRDVSKVEIGAANDRILS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + ++  +     + A    A L           +   +      S   
Sbjct: 273 RFNGKPAINIGVTRQSTANPLELSKAAREEVARLNENLPAGMKLTIAYDSSVFIERSIDS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F  +   +  ++   +I ++++   AL+ L G ++   ++  +V
Sbjct: 333 VFHTIGEAIVLVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I            +   G       +    +T +     L F  
Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEDGMPRKEAALRGSREIGFAVVAMTMTLVTVYAPLAFAT 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA+ +  ++L+S F A+++   M   ++R++   S   N +  +       
Sbjct: 453 GRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQSSHSRWYNLIEGWLDAMSNG 512

Query: 539 AIQ 541
             +
Sbjct: 513 YRR 515



 Score = 84.7 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 84/249 (33%), Gaps = 7/249 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PV L  V           I  +        +   +    + +  ++       ++ E +P
Sbjct: 252 PVRLRDVSKVEIGAANDRILSRFNGKPAINIGVTRQSTANPLELSKAAREEVARLNENLP 311

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                             I      +  + + +++ I+   +    ++  I T+ + +  
Sbjct: 312 AGMKLTIAYDSSVFIERSIDSVFHTIGEAIVLVVLVIFFFLRNLRASIIPIVTIPVSLVG 371

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                 LFG   N   + A++  IG  V+D +VV + +    +     +  ++   +   
Sbjct: 372 ACALMYLFGFSINTLTLLAMVLAIGLVVDDAIVVLENI---FRHIEDGMPRKEAALRGSR 428

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     V  +M       P+A   G        FA+ +A  ++V+   ++ +   +   +
Sbjct: 429 EIGFAVVAMTMTLVTVYAPLAFATGRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVL 488

Query: 824 YDWRAKNAR 832
              ++ ++R
Sbjct: 489 LRHQSSHSR 497



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            G + ++ +     IY+ +      W      + ++ L +T  L    L G   ++ +  
Sbjct: 845 SGSIYLVFAMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQI 904

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++TL+G      +++ +      +L     +  + + ++    L   + T+ A  +  +
Sbjct: 905 GLITLVGLITKHGILIVEF---TNQLRDEGKALFEAVTEASVLRLRPILMTTGAMVLGTV 961

Query: 785 PMAVWGGS 792
           P+A+  G+
Sbjct: 962 PLALSSGA 969


>gi|46578478|ref|YP_009286.1| multidrug resistance protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120603938|ref|YP_968338.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Desulfovibrio
           vulgaris DP4]
 gi|46447889|gb|AAS94545.1| multidrug resistance protein, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120564167|gb|ABM29911.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio vulgaris DP4]
 gi|311232406|gb|ADP85260.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio vulgaris RCH1]
          Length = 1046

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 72/540 (13%), Positives = 156/540 (28%), Gaps = 40/540 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      +    + ++P  +P               + +E   
Sbjct: 9   RPIFATVVSLVIILAGFMA-----MRGLPIAQYPDIIPP-------------QVEVEATY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +        I   S       + ++F      +     V  
Sbjct: 51  SGASPEVVAATVAAPLEQQINGVDNMLYINSTSSSTGTMNLMVTFEVGTDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q    +L  D ++  +  T +    + +   N        I  S   +   ID++   
Sbjct: 111 RVQAALPQLPEDVRRRGVTVTKKSSNMLQVISMNSPDERYDTIYISNYALVNVIDELRRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     +        +     P ++ QL  T + +       N        G + L D  
Sbjct: 171 KGVGDVVLFTAQDYSMRVWLQPDKMAQLRLTPSDVIGAIQEQNAQFAAGRIGQQPLHDPV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              ++V  K  +S                +    I   E         +   +       
Sbjct: 231 ELTFMVNTKGRLS-------------TPEEFENIILRVEEDGSTLKLKSVARVELGAKDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A +           +          
Sbjct: 278 NFMGKENGKPTVPIGIFLAPGANALETADRVSAAMAEMSLRFPDGVSYSIPYDTTKFVRV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  ++   ++ ++VI   A + +LG T+   ++
Sbjct: 338 SIDEVVKTLFEAMVLVFIVIYLFLQNWRATIIPCLAVPVSVIGAFAGMYMLGFTINTLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +     +    V  +         S I  + +      + 
Sbjct: 398 FGLVLAIGLVVDDAIIVLENVERIMAEEHLPVKQATIKAMHEVASPIVATVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FAIT+ +S+ IS   A+++  A+    ++    +          + 
Sbjct: 458 VAFAGGLAGQMYKQFAITIAVSMAISGLVALTLSPALCAMFLKPGHQEPNRFFRWFNNWF 517



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 80/237 (33%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  +   +        +        +++     +     +++   P     
Sbjct: 266 SVARVELGAKDYNFMGKENGKPTVPIGIFLAPGANALETADRVSAAMAEMSLRFPDGVSY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +      K  R  I + +  +  + + + I I++  + W   +     + + +       
Sbjct: 326 SIPYDTTKFVRVSIDEVVKTLFEAMVLVFIVIYLFLQNWRATIIPCLAVPVSVIGAFAGM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   N   +  ++  IG  V+D ++V + +     +    +  +    K+++E    
Sbjct: 386 YMLGFTINTLTLFGLVLAIGLVVDDAIIVLENV--ERIMAEEHLPVKQATIKAMHEVASP 443

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V T +      +P+A  G   G +   FAI +A  + ++   ++ ++  +      
Sbjct: 444 IVATVLVLCAVFIPVAFAGGLAGQMYKQFAITIAVSMAISGLVALTLSPALCAMFLK 500



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 64/166 (38%), Gaps = 7/166 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               +   +  + + + +  +++ W   L  I  +   +   +    L G++ ++    ++
Sbjct: 869  TSFMVFALGLVMVFLILAAQYEKWSLPLAVIMIVPFALFGAMAATWLRGLDNDVYLQVSL 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG +  + +++ +     M          + + ++        + TSMA  +  +P+
Sbjct: 929  VTLIGLAAKNAILIVEFA---MMQVHEGKGIVESVTEAARLRFRPIIMTSMAFVLGCVPL 985

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            A+    G +   +    +  G++ A   + F        I +  A+
Sbjct: 986  AISSGAGAAGRHAIGTGIIGGMLAATFIATFFIPLFFRLIMELSAR 1031


>gi|324119446|gb|EGC13329.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E1167]
          Length = 1034

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKNVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKNVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|294141987|ref|YP_003557965.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
 gi|293328456|dbj|BAJ03187.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
          Length = 1047

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 184/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L        +  + ++PS  P   +            +     
Sbjct: 8   RPIFAWVIAIIVMLAGVLSIF-----KLPVSQYPSIAPPTVV---------IWAMYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTMEDSVTQVIEQRMTGIDNLRYISSTSDSFGNAEITLTFNAEADPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L ++ ++  +  T   E  ++L             + S  +     D +       
Sbjct: 114 AMPQLPLEVQQQGVKVTKSSEGFLMLVGFVSKDDSLDKNDISDYVASNIQDPLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +   T+  +       N        G            
Sbjct: 174 NIELFGAQ-YAMRIWLDPLKLTEYHLTSIDIMASIREQNAQISAGQLGASPALPGQVLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +    +        +           
Sbjct: 233 TVSAQSRL-------------QTPDQFKKIIIKADSSGAKVLLEDVARVELGGESYTVNS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +      A ++         +           S   
Sbjct: 280 FYNGKPTVGIAIHLATGANAIATADAVREEIAEMQPFLPKGVEVVYPYDTTPFVERSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T A+LS  G ++   ++  +V
Sbjct: 340 VVHTLLEAVVLVFLIMYLFLQNLRATLIPTIAVPVVLLGTFAILSAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPVEATKKSMGQITGALVGIGLTLAAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G      R F++T+  ++ +S+  A+ +  A+   +           +       + + 
Sbjct: 460 SGSTGVIYRQFSVTIISAMGLSVMVALILTPALCATMLKPIKKDQSHTQTGFFGWFNRSF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   + +     R     +    L    +   +         + +G +    +   
Sbjct: 520 DKLTSGYTNSVTAMIKRTGRVMLIYLGLVIAMAWIFIHMPTAFLPDEDQGIMFNQAVLPV 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L      ++ +    ++ ++ +    F V      G           +K        
Sbjct: 580 NSSLESTEKVMKRVTDYYLNDESENVNSIFSVSGFSFAGRGQNMGVNFVSMKDWSEREGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
              I++         + +    +V  +
Sbjct: 640 GQDIKSVADRAMTQFKLIKDASVVAFV 666



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 81/247 (32%), Gaps = 6/247 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   ++          +        +++A    +     ++   +P 
Sbjct: 260 VLLEDVARVELGGESYTVNSFYNGKPTVGIAIHLATGANAIATADAVREEIAEMQPFLPK 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I   +  ++ + + + + +++  +     L     + + +  T
Sbjct: 320 GVEVVYPYDTTPFVERSIEGVVHTLLEAVVLVFLIMYLFLQNLRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               +  G   N   + A++  IG  V+D +VV + +     +    +S  +   KS+ +
Sbjct: 380 FAILSAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPVEATKKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V   +      +PMA   GS       F++ +   + ++   ++ +   +   + 
Sbjct: 438 ITGALVGIGLTLAAVFVPMAFMSGSTGVIYRQFSVTIISAMGLSVMVALILTPALCATML 497

Query: 825 DWRAKNA 831
               K+ 
Sbjct: 498 KPIKKDQ 504



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 66/185 (35%), Gaps = 8/185 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  +S I + + +   ++ W      I  + L +   L 
Sbjct: 853  FGIEWNGLSYEERLSGDQAPALYALSIIVVFLVLAALYESWSVPFSVILVVPLGVIGALI 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 G+  ++    A+LT +G +  + +++ +  ++    Y       D    ++   L
Sbjct: 913  TMNSRGLPNDVFFQVALLTTVGLATKNAILIVEFAKEY---YEKGTPLVDATLHAVRVRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A  + VLP+A+    G     +    +  G++ +    IF      + +   
Sbjct: 970  RPILMTSLAFGLGVLPLAISTGVGSGSQNAIGTAVLGGMMSSTFMGIFFIPIFFVVVERI 1029

Query: 827  RAKNA 831
              K+ 
Sbjct: 1030 FNKSK 1034


>gi|282897255|ref|ZP_06305257.1| SecF protein [Raphidiopsis brookii D9]
 gi|281197907|gb|EFA72801.1| SecF protein [Raphidiopsis brookii D9]
          Length = 318

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 87/311 (27%), Positives = 160/311 (51%), Gaps = 16/311 (5%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV------ 583
               +     I ++ +    +   I   I          L  G+DF GG +L +      
Sbjct: 1   MRLHVNKWRNIWWLFSSVIIISGIISMVISWQIPTIKAPLRPGLDFIGGTRLQLVRDCQQ 60

Query: 584 --LANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKK 640
               N+P+D++VVR   +   +G+ S Q          + ++ +  D+  + R+   + +
Sbjct: 61  PGNCNQPIDINVVREVAKEQGLGESSIQLISDNGEQNGITIRTKNLDTEQRVRLQSALSQ 120

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K+    P       + VGP + REL R GI+ +I+S I + IY+ +RF+W +A+ AI  L
Sbjct: 121 KVGVFDP--QKNQIDDVGPTLGRELFRSGIIALIVSFIGITIYLAVRFQWDYAVFAIIAL 178

Query: 701 ILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + DI  T+G F++FG    IE +   + A+LT+ G+SVND VV+YDR+R+N+K+   +  
Sbjct: 179 LHDILVTVGIFSIFGLVFGIEVDSLFIVALLTITGFSVNDTVVIYDRIRENIKVNPQT-P 237

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++D ++++TL RS+ T++   +S++ + ++GG  +  F++ +  G      SSIFIA
Sbjct: 238 IDRIVDDAVDQTLTRSINTTLTTMLSLVAIFIFGGETLKYFSLALIIGFGAGVYSSIFIA 297

Query: 817 APILLFIYDWR 827
           + +L    +  
Sbjct: 298 STLLTLWRERS 308


>gi|325915104|ref|ZP_08177430.1| protein-export membrane protein SecD [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538626|gb|EGD10296.1| protein-export membrane protein SecD [Xanthomonas vesicatoria ATCC
           35937]
          Length = 614

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 140/517 (27%), Positives = 252/517 (48%), Gaps = 36/517 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
           S +  + + +    + LGLDL GG H  ++VD+   V   ++ +++++R+ L+   I   
Sbjct: 106 STVPEWLAKLGGKPMVLGLDLVGGVHFAMQVDQKAAVEKRIEGFAEDIRTTLRDGRIAYR 165

Query: 90  SM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
           ++ R+  N I +S  +    +     +               +  L    + + I++ + 
Sbjct: 166 AVERRGDNSIQISLGEGASADAARTALAK------------AQPTLTYDVSGQNIAVKVP 213

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
           +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L+G 
Sbjct: 214 EAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGA 273

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATANFD 262
           TA + F  V+  N++     G              G   L+  +  ++G  +  A+ + D
Sbjct: 274 TASLEFRAVVEGNAEDAVRSGSIPPEAKVYRVRDTGAPVLLNKRALVTGDQMVSASVSND 333

Query: 263 PKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRVLTA 305
                 V     +  G R                      T   +       +  +    
Sbjct: 334 QNGMPAVSVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEAL 393

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
                A   GK   +       A  LA +L++GSL   ++ VEE  +G  LG++++ +G 
Sbjct: 394 SPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGV 453

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A+V   +  ++F  + Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L +G
Sbjct: 454 TAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVG 513

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           L+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG G +
Sbjct: 514 LSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPL 573

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +GFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 574 KGFALTMMIGIFASMFTAITVSRALAVLIYGSRKKLK 610



 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 94/254 (37%), Gaps = 4/254 (1%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V+    +    +    E   +              +    +Q               
Sbjct: 363 LMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLEKTEAENLAKL 422

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K   +          ++GP +  E + +G+  V+ S +  L++  I ++  F       
Sbjct: 423 LKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYRV-FGAITSVA 481

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+ ++L    +  + 
Sbjct: 482 LLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRL---GVPAKS 538

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            I     +  G  +  ++   I  + +  +G   +  FA+ M  GI  +  ++I ++  +
Sbjct: 539 AIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIFASMFTAITVSRAL 598

Query: 820 LLFIYDWRAKNARI 833
            + IY  R K   +
Sbjct: 599 AVLIYGSRKKLKTV 612



 Score = 43.1 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 34/123 (27%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W   L  ++  +  L ALPN   +    +                          
Sbjct: 2   LEFPRWKYFLILLVLAVSALYALPNIYQKDPSVQ-------------------------- 35

Query: 61  DEDDFVNGFLQMYSDELRSFLKKE----GIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                         D LRS +  E    GI   ++ +  + + +     + +    D + 
Sbjct: 36  ----ITASRGAQLDDALRSRIDGELKAAGITPKAVTKEGDSLMVRLPSLQAQTRANDVLR 91

Query: 117 LFL 119
             L
Sbjct: 92  QQL 94


>gi|296157261|ref|ZP_06840097.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. Ch1-1]
 gi|295892597|gb|EFG72379.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. Ch1-1]
          Length = 1069

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 68/575 (11%), Positives = 156/575 (27%), Gaps = 46/575 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPA-------------VQISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   +     +   S     +    ITL+FA     +    +V  
Sbjct: 50  PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++     T      +++     +    +  + +  +     D +   
Sbjct: 110 KLQLATPLLPQAVQQLGTKVTKSSSSFLLVMAFVSEDGSMNKYDLANYVASNIQDPVSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    D ++L     T   +       N    G   G        
Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVQTALTAQNVQVAGGSLGGTPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        I       
Sbjct: 229 VLQATITEATLL-------------NTPEQFGNVLLKVNPDGSQVRIKDVGRIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A L        +             
Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATAKAVREKVAELSKYFPHGLVVQYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++ L+G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMGLVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMQEEGLSPRDATRKAMDQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I+     R   
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIEKGHQERTTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                   F R+R             S   L  + 
Sbjct: 511 FFGWFNRTFNRSRDKYHSGVHHVIKRSGRWLIIYM 545



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +  +   +                 +++A  + +     ++++  
Sbjct: 258 SQVRIKDVGRIELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVREKVAELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     L     + + + 
Sbjct: 318 PHGLVVQYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N  ++  ++  IG  V+D +VV + +     +    +S RD   K++
Sbjct: 378 GTFAIMGLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMQEEGLSPRDATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 76/221 (34%), Gaps = 8/221 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++    PG S  Q                        +   +   +    
Sbjct: 816  ERYNGISAVEIQGAAAPGKSTGQAMTAMEALVAKLPAGVGYEWTGLSLQERQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YGISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+        +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQGQGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                G +   +    +  G++ A   +IF+     + I   
Sbjct: 991  SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 137/520 (26%), Gaps = 28/520 (5%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         L     G +       
Sbjct: 536  RSGRWLIIYMVVIFAVGLLFV------KLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              D  +  L      + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LKDVSDYLLNTEKSIVESTFTVNGFSFAGRGQNAGLVFVRMKDYSVRQHSDQKVQALVGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +           L+       I  + +    D  +        E + +  + +    +  
Sbjct: 650  LFMHFGSYKNA-LVYPVNPPSIPELGTAAGFDFELQDRAGVGHEKLMEARNMLLGMAAKD 708

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
              L   R        Q    +     +   +S   +    S       V    D+DG   
Sbjct: 709  PTLAQVRPNGLNDTPQFKVDIDHEKASALGVSLSAIDQTFSIAWASQYVNNFLDTDGRI- 767

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                KV + G              +                   +  +           R
Sbjct: 768  ---KKVYLQGDAPFRMKPEDLNAWY-------VRNGAGNMVPFSSFASGTWTYGSPKLER 817

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +     +   + +G        ++A +            ++ER  G      S 
Sbjct: 818  YNGISAVEIQGAAAPGKSTGQAMTAMEALVAKLPAGVGYEWTGLSLQERQSG------SQ 871

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  I   +V + L  +             + L VI  L   +L G    +    G++
Sbjct: 872  APILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931

Query: 422  LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +GL+  + IL+ E  RE +  +      +           I  +++  ++  + L   
Sbjct: 932  TTVGLSAKNAILIVEFARELQQGQGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAIS 991

Query: 481  ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
               G  +       +   +L + F AI ++    + I   
Sbjct: 992  NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031


>gi|260072733|gb|ACX30629.1| preprotein translocase subunit SecF [uncultured bacterium
           ARCTIC96BD-19]
          Length = 308

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 95/289 (32%), Positives = 161/289 (55%), Gaps = 7/289 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I F+  R + +  S +  + SI  +   GL +GIDF GG  + +      DL  +RS L 
Sbjct: 11  IDFVGKRKFAMIFSAVLLVLSITSIGFQGLKFGIDFTGGTLIELGYENTADLEDIRSKLS 70

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                  + Q F  +   L++L+ Q   S   +  +  +      +     I+  E VGP
Sbjct: 71  EGDFKGTNVQYFGSDTEVLIQLEPQEVSSAKLSSSIIRM------LGDGIDIRRVEFVGP 124

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL   G + ++ + I +LIY+  RF++ FALG+I  L+ D+  TLG F++  IEF+
Sbjct: 125 KVGEELTNDGGLAMLYALIGILIYVAFRFEYRFALGSIAALVHDVIITLGIFSILQIEFD 184

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AA+L +IGYS+ND +VV+DR+R+N  L T  +    +I++++N+TL R++ TS+  
Sbjct: 185 LTVLAAILAVIGYSLNDTIVVFDRIRENF-LSTRQVEAEPIINEALNQTLSRTLMTSLTT 243

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +L +   GG VI SFA  +  G++V   SSI++A+ ++L +   + 
Sbjct: 244 LLVLLALFYLGGEVIHSFAGALLIGVIVGTYSSIYVASSMILALGISKE 292


>gi|323966444|gb|EGB61878.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli M863]
 gi|327251360|gb|EGE63049.1| inner membrane protein [Escherichia coli STEC_7v]
          Length = 1034

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLVAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|282864184|ref|ZP_06273240.1| protein-export membrane protein SecF [Streptomyces sp. ACTE]
 gi|282560671|gb|EFB66217.1| protein-export membrane protein SecF [Streptomyces sp. ACTE]
          Length = 368

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/301 (27%), Positives = 143/301 (47%), Gaps = 13/301 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+  R    G+SIL +I +I  L   GLN GI+FKGG          V +S    +  
Sbjct: 18  YDFIGKRKIWYGVSILITITAIVGLAVSGLNMGIEFKGGAVFTTDEKPKVSVSQAHESAV 77

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                +   Q         +R+Q    D+     V   +   +       +  N ++VGP
Sbjct: 78  EASGHEAIVQELGDGN---LRIQITEVDTAKANEVKTQLSDDL---GIPESKINADLVGP 131

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++  K   G+ I  + +++Y+ I F+W  A+ A+  LI DIT T+G +AL G E  
Sbjct: 132 SWGEQIANKAWTGLGIFMVLVVVYLAIAFEWRMAIAALVALIHDITITVGVYALVGFEVT 191

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++GYS+ D VVV+D ++++    T     ++ ++ ++SIN TL RS+ T++
Sbjct: 192 PGTVIGLLTILGYSLYDTVVVFDSLKESTVSITKQTRWTYSEIANRSINGTLVRSINTTV 251

Query: 778 AAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A + V  +   GG V     +   ++ +  G+   A SSIFIA P++  + +   +   
Sbjct: 252 VALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLKEREPQMKA 311

Query: 833 I 833
           +
Sbjct: 312 L 312


>gi|331684906|ref|ZP_08385498.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           H299]
 gi|331078521|gb|EGI49727.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           H299]
          Length = 1034

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|226366285|ref|YP_002784068.1| preprotein translocase subunit SecF [Rhodococcus opacus B4]
 gi|226244775|dbj|BAH55123.1| protein-export membrane protein SecF [Rhodococcus opacus B4]
          Length = 408

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 140/313 (44%), Gaps = 12/313 (3%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L     A + +  R +   ++    + S+  +   G   GIDF+GG ++   A 
Sbjct: 30  HSWLSRLYTGTGAFEVVGRRKFYYILTGTIVLISLLSILVRGFTLGIDFEGGSRIQFPAG 89

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKK 641
             VD + V +        D       G  +             AQ       + +  + K
Sbjct: 90  GGVDTAQVENVYSEALGMDPVSVQTVGSGSSATVQIRSEALDAAQVVTLQNALYDEFQPK 149

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
            ++      + +   V      ++ +K ++ +++  + + IYI +RF+   A+ AI  L 
Sbjct: 150 DSDGTVNENVISVADVSETWGGQITQKALIALLVFLVIVSIYIAVRFERDMAIAAIVALF 209

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRD 759
            DI  T G ++L G E     V  +LT++G+S+ D VVV+D++ +N +  L+ T  ++ +
Sbjct: 210 FDIAVTAGVYSLVGFEVTPATVIGLLTILGFSLYDSVVVFDKVEENTRGILHLTRRTYAE 269

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIF 814
             + ++N+TL RS+ T++ + + VL + V      G   +   A+    GI+V A SSIF
Sbjct: 270 QANLAVNQTLMRSINTTLISVLPVLALMVVAVWMLGVGTLKDLALVQLVGIIVGAYSSIF 329

Query: 815 IAAPILLFIYDWR 827
            A P+L+ + +  
Sbjct: 330 FATPLLVTLKERW 342


>gi|75675960|ref|YP_318381.1| preprotein translocase subunit SecF [Nitrobacter winogradskyi
           Nb-255]
 gi|74420830|gb|ABA05029.1| protein translocase subunit secF [Nitrobacter winogradskyi Nb-255]
          Length = 352

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 191/307 (62%), Gaps = 6/307 (1%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
              L    +IPD     F R R     IS + SI +I L FTHGLN+GIDFKGG  L V 
Sbjct: 22  FGLLPSLRIIPDDTKFDFTRFRRISFPISAVLSIVAITLFFTHGLNFGIDFKGGTLLEVQ 81

Query: 585 ANR-PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           A    VD++ +R+ L  L +G++  Q F G  + L+R+  QPG   AQ   ++ V+  + 
Sbjct: 82  AKSGEVDIASMRATLSKLDLGEVQLQQFGGPTDVLIRVAEQPGGDAAQQEAVQKVRGAL- 140

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   +  E+VGP++S EL+  G++G+I++ I +L+Y+W RF+W FALGA+   + D
Sbjct: 141 --GETVNYRRVEVVGPRVSGELLAYGMIGLILAIIGILVYLWFRFEWQFALGAMIANVHD 198

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T+GF ++  ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y   +   +L++ 
Sbjct: 199 IVLTIGFMSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREILRRY-KKMPMPELLNA 257

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLF 822
           SIN TL RS+ T +   +++L + ++GG  I SF   M FG ++V   +SIFIAAPIL++
Sbjct: 258 SINSTLSRSIITHVTVTLALLALLLFGGPAIHSFTAVMTFGVVLVGTYTSIFIAAPILIY 317

Query: 823 IYDWRAK 829
           +    ++
Sbjct: 318 LGVGESR 324


>gi|193071528|ref|ZP_03052438.1| acriflavine resistance protein F [Escherichia coli E110019]
 gi|192955165|gb|EDV85658.1| acriflavine resistance protein F [Escherichia coli E110019]
          Length = 1034

 Score =  196 bits (496), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALVTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALVTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|315181756|gb|ADT88669.1| acriflavin resistance plasma membrane protein [Vibrio furnissii
           NCTC 11218]
          Length = 1050

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/692 (11%), Positives = 194/692 (28%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +      L    +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAIA-----LSILPVAEYPKISPP-------------SVSVTAF 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    +T++F      +     V 
Sbjct: 50  YTGASAEVVEQAVADPIETSVNGVENMIYMSSKSANDGSYNLTVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++            +  +  +     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFFSPDGRYDDMFLTNYVNLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ +       N        G      +
Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPKKMASLKLTTSDIYAALAEQNVQVAAGRIGAAPYNHA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +  +              +    +          +      I      
Sbjct: 230 QDVQFNLVTKGRLESVQ-------------EFENVVLRANNDGSSIYLKDIARIELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    +   L        +            
Sbjct: 277 YDGNGKFRGRDSSIVALSLQSDANALESGQAVMDMLETLSGNFPDGMVYETSYDTTLFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++ + G T+   +
Sbjct: 337 ESIKSVVKTLVEAIILVIAVTYLFLGSFRSTLIPVVAIPVSLIGTFAVMLMTGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G++L IG+ VD  ILV E +     K+   S   +  M        I  S +  L   
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTLSPRQATLMAMKEVTGPIITSTLVLLAVF 456

Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +    L    G   R FA+T+ +S++IS   A+++  A+   +         +  K+ + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCAMVLKQGGDNTARWFKAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                         I   ++    V   +     S     T       + KG + + V  
Sbjct: 517 GLEHVTNRYGQIAGILVKKSLMLIVFFVVAVGAVSWMAKNTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     +   +    T  
Sbjct: 577 PDSASLSRTEETTAQLMAMVEKEPGVDGVTVANGYSFMTGAAASNGASMFIKLHDWETRR 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +   +  +I+    +     ++ + 
Sbjct: 637 AL-PGDHSANAISMRINGHAAQTLPQAIVFAM 667



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 88/235 (37%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L  +       +  D + +    + + +        +++   + +  + + ++   P 
Sbjct: 262 IYLKDIARIELGKKFYDGNGKFRGRDSSIVALSLQSDANALESGQAVMDMLETLSGNFPD 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
             +  T         E I+  +  ++ + I ++         +   L  +  + + +  T
Sbjct: 322 GMVYETSYDTTLFVAESIKSVVKTLVEAIILVIAVTYLFLGSFRSTLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N   +  ++  IG  V+D ++V + +         ++S R     ++ E
Sbjct: 382 FAVMLMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTLSPRQATLMAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      LP+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 45.5 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 674 IISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +   + IY   +     W   L  I  + +    +     L G   NL A   ++ LI
Sbjct: 877 AFALALIFIYLFMVAQYESWSIPLAIILVVPVATLGSFIALTLTGTALNLYAQIGLVLLI 936

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
             +  + +++ +  +  M+     +                   TS +  + + P+    
Sbjct: 937 ALAAKNAILIVEFAK--MEREEKDLPIEQAAIDGGKLRFRAVNMTSWSFILGIFPLIFAS 994

Query: 791 GS 792
           G+
Sbjct: 995 GA 996


>gi|229491971|ref|ZP_04385788.1| preprotein translocase subunit SecF [Rhodococcus erythropolis
           SK121]
 gi|229321103|gb|EEN86907.1| preprotein translocase subunit SecF [Rhodococcus erythropolis
           SK121]
          Length = 407

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 140/314 (44%), Gaps = 12/314 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     A + +  R +  G++      ++  +   G  +GIDF+GG ++   A
Sbjct: 40  KHSWLSRLYTGTGAFEVVGKRRFYYGLTGALVAIALLSIILRGFTFGIDFEGGSRIQFPA 99

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKK 640
              V+ S V +        +       G                   +  Q+ + +  + 
Sbjct: 100 EGGVETSAVETVYSDTLGFEPVSVQTVGSGASATVQIRSETLNATQINDLQSALFDEFQP 159

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K     P +   +   V      ++ +K ++ +I+  + + IYI IRF+   A+ AI  L
Sbjct: 160 KDKNGNPSAQAISFADVSETWGGQITKKALIALIVFLVIVSIYIAIRFERDMAVAAIVAL 219

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFR 758
             DI  T G ++L G E     V  +LT++G+S+ D VVV+D++ +N +  L+ T  ++ 
Sbjct: 220 FFDIIVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVVVFDKVEENTRGVLHLTRRTYG 279

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSI 813
           +  + ++N+TL RS+ T++ + + V+ + V      G   +   A+    GI+V A SSI
Sbjct: 280 EQANLAVNQTLMRSINTTVISVLPVIALMVVAVWMLGVGTLKDLALVQLVGIIVGAYSSI 339

Query: 814 FIAAPILLFIYDWR 827
           F A P+L+ + +  
Sbjct: 340 FFATPLLVSMKERW 353


>gi|167647986|ref|YP_001685649.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Caulobacter
           sp. K31]
 gi|167350416|gb|ABZ73151.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Caulobacter sp. K31]
          Length = 1049

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/687 (11%), Positives = 187/687 (27%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P+             +   + +     
Sbjct: 9   RPIFAWVVAIVIMLAGVLAI-----RTLPIAQYPNIALP---------QVSVNAIYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L     +   S        TL+F      +    +V   LQ 
Sbjct: 55  AKTVEDSVTQVIEQKMKGLDGLDYMSSTSDSSGSATTTLTFKAGTNIDIAQVQVQNKLQT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + ++  L         +++     +   +   + +  I     D +   +   
Sbjct: 115 ATALLPQEVQQQGLTVAKSARNFLLIVGMYSEDPKTTNTDLADYIASNLQDPLSRVDGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP++L     T A +       N        G        G   
Sbjct: 175 EVQLFGAQ-YAMRVWLDPTKLASYSLTPADVIAAIKAQNAQVSAGQLGGTPNLPGIGLNA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +S                +    I  +  G           +         G 
Sbjct: 234 TITAQSRLS-------------TPAEFQNIIVKNSAGGAIVHLRDVARVELGAESYGFGA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +      + L          ++   +      S   
Sbjct: 281 KYNGKPAAGLAIRLAPGANALDTADAIKARMSQLEKNFPANFKYVIPYDSTPFVRLSIEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 341 VVKTLIEAIVLVFIVMFLFLQNWRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFGLV 400

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +     +     +    +      V + FF
Sbjct: 401 LAIGLLVDDAIVVVENVERVMSEEGLSPIEATRKSMNEITGALIGIALVLAAVFVPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++ +S+  A+ +  A+   +                   + N 
Sbjct: 461 GGSQGVIYRQFSITIVSAMALSVLVALILTPALCATLLKPVAKGHTIADKGFFGWFNRNF 520

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     ++  W V   ++  +     +         + +G +   V    
Sbjct: 521 NDVSHRYQGTVRGLLGKSGRWLVAYGVIILLVGFLFIRLPSAFLPEEDQGTMYALVQLPP 580

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  ++ L++++   +  +    +  F V      G           +K        
Sbjct: 581 GAPEERTQAVLDTVRSHFLVDEKDSVQAVFTVAGFSFAGAGQNAGLAFIRLKDFDQRKAA 640

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
                           ++    +  ++
Sbjct: 641 NLKAPAIAGRAMGKFMQIRDAMVFAIV 667



 Score = 85.5 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +      +        L        +++     ++    ++ +  P 
Sbjct: 261 VHLRDVARVELGAESYGFGAKYNGKPAAGLAIRLAPGANALDTADAIKARMSQLEKNFPA 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +             R  I + +  +I + + + I +++  + W   L     + + +  T
Sbjct: 321 NFKYVIPYDSTPFVRLSIEEVVKTLIEAIVLVFIVMFLFLQNWRATLIPTIAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A FG   N   +  ++  IG  V+D +VV + +     +    +S  +   KS+NE
Sbjct: 381 FGVLAAFGYSINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPIEATRKSMNE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA +GG   VI   F+I +   + ++   ++ +   +   + 
Sbjct: 439 ITGALIGIALVLAAVFVPMAFFGGSQGVIYRQFSITIVSAMALSVLVALILTPALCATLL 498

Query: 825 D 825
            
Sbjct: 499 K 499



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 57/147 (38%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + L I   L   +L G+  ++     +LT +G +  + +++ +  +   
Sbjct: 893  SWSIPLSVIMVIPLGIVGALLATSLRGLSNDIYFQVGLLTTMGLASKNAILIVEFAKD-- 950

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+   +   +   +++   L   + TS+A    VLP+A+    G     +    +  G+
Sbjct: 951  -LHEKGMDLVEATVEAVRIRLRPIIMTSLAFVFGVLPLAISNGAGSGSQHAIGTGVIGGM 1009

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +        R
Sbjct: 1010 ISATLLAIFFVPLFFVIVERIFKPKPR 1036


>gi|291284633|ref|YP_003501451.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor
           [Escherichia coli O55:H7 str. CB9615]
 gi|290764506|gb|ADD58467.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor
           [Escherichia coli O55:H7 str. CB9615]
 gi|320645628|gb|EFX14637.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor
           [Escherichia coli O157:H- str. 493-89]
 gi|320650938|gb|EFX19395.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor
           [Escherichia coli O157:H- str. H 2687]
 gi|320656319|gb|EFX24231.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor
           [Escherichia coli O55:H7 str. 3256-97 TW 07815]
 gi|320662009|gb|EFX29417.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor
           [Escherichia coli O55:H7 str. USDA 5905]
          Length = 1034

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
             S             +    D   L +   T   +     + N+       G       
Sbjct: 169 LNSVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|239831137|ref|ZP_04679466.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ochrobactrum intermedium LMG 3301]
 gi|239823404|gb|EEQ94972.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ochrobactrum intermedium LMG 3301]
          Length = 1051

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 83/685 (12%), Positives = 190/685 (27%), Gaps = 46/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPIAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +     D             +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFSDSDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +          I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 QGVGDVQLLGNIDYSMRIWLRPDKLAQYNLTPSDVSTAIQEQNAQFAAGRFGDQPDPQAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +             P        I      A          +       
Sbjct: 230 PFTYTATTQGRL-------------PDAAAFENIILRSSPNAATLRLKDVARVELGTESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 277 LVDSNLNGTSAVPIAIYLQPGANALNTMELIQNRMDELKASFPAGIDYSIPFDTTKFIKV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 337 SIEEVIHTFIEAIILVVLVVFIFLQNWRATLIPIIAVPISIIGTFAGMYVLGFSINLLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 397 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINP 527
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++          +  +   
Sbjct: 457 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPMLPFRIFNRFF 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     RA    V  + L            G     + +G +    +   
Sbjct: 517 ERVTDGYSRGVRFFLKRAAIGLVIFAGLLGATYYLFERVPGSLLPDEDQGFLFSVAVLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L    + L+            +             G   +   +  M+K       P
Sbjct: 577 AASLERTTAVLDQASANIRKNPAVESVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTP 636

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            +  +N       ++  +    ++ 
Sbjct: 637 ETDARNLPGAIMGMNAGIKDGLVLA 661



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 75/197 (38%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    ++ +K      +  S   +T         E+I   I  +I+  + + I++ 
Sbjct: 302 NTMELIQNRMDELKASFPAGIDYSIPFDTTKFIKVSIEEVIHTFIEAIILVVLVVFIFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  I  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 362 ---NWRATLIPIIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 418 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 476

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 477 ISVTLSGLVALTLTPAL 493



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 774  FRRDPSDLKHVFVRANSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKITGNPAPGFTSG 833

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   + + + +  ++
Sbjct: 834  DAIKAMQEVAAEVLPQGYQIAWTGSAYQEVTTSG-----TGTQAMIFGLVMVFLILAAQY 888

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 889  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 945

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    T  S  +    +        V TS+A  + V+P+A+    G +   S    +  G
Sbjct: 946  VLERETGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAISTGAGSASRHSIGTGVIGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1006 MLAATFIATFFIPMFYSLIARKPPKR 1031


>gi|163748850|ref|ZP_02156102.1| AcrB/AcrD/AcrF family protein [Shewanella benthica KT99]
 gi|161331624|gb|EDQ02429.1| AcrB/AcrD/AcrF family protein [Shewanella benthica KT99]
          Length = 1047

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 74/687 (10%), Positives = 185/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L        +  + ++PS  P + +            V     
Sbjct: 8   RPIFAWVIAIIVMLAGVLSIF-----RLPVSQYPSIAPPSVV---------ISAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + L        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTMEDSVTQVIEQRMTGLDNLRYISSTSDSFGNAQITLTFNAETDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + +   +  +      +++             + S  +     D +       
Sbjct: 114 AMPLLPQEVQAQGVNVSKSSAGFLMVLGFVSQDGSLDRNDISDYVASNIQDPMSRVAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L Q   T+  +       N        G            
Sbjct: 174 TIQLFGAQ-YAMRIWLDPFKLTQFNLTSIDIMASIREQNAQVSAGQLGGVPSVGGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +      +      +           
Sbjct: 233 TVSAQSRL-------------QTVDQFERIIVKSDPSGANVYLKDVARVELGAESYSSES 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T          ++A        +           S   
Sbjct: 280 FYNGKPAAGIGIQLATGANALATAGAIRAKIDEMKAFFPQGLEVVYPYDTTPFVEQSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++F+ +   +  L+   ++ + ++ T A+LS +G ++   ++  +V
Sbjct: 340 VVHTLIEAIVLVFLIMFLFLQNFRATLIPTIAVPVVLLGTFAILSAVGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEEGLSPVEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G      R F++T+  ++ +S+  A+ +  A+   +          I        + + 
Sbjct: 460 SGSTGVIYRQFSVTIVSAMGLSVMVALILTPALCATMLKPMKKGQTHINTGFFGWFNRSF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +A    R     +   +L        +         + +G +    +   
Sbjct: 520 DKMTSRYTDTVAAMIKRTGRVMLIYLVLVVAMGWIFMRMPTAFLPDEDQGIMFTQAILPV 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L   +  +E +    ++ ++ + E  F V      G+          +K        
Sbjct: 580 NSTLESTQKVMEDVTDYFLNEESENVESVFTVSGFSFAGNGQNMGIAFVSMKDWSEREGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
              I++          ++    +   +
Sbjct: 640 GQDIKSVAARAMGKFMQMKEAFVFAFV 666



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 82/227 (36%), Gaps = 8/227 (3%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            + +   G    L         + A    ++ +K    + + +    +T     +    +
Sbjct: 281 YNGKPAAGIGIQLATGANALATAGAIRAKIDEMKAFFPQGLEVVYPYDTTPFVEQSIEGV 340

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           +   I  +++  + M +++     +   L     + + +  T    +  G   N   + A
Sbjct: 341 VHTLIEAIVLVFLIMFLFLQ---NFRATLIPTIAVPVVLLGTFAILSAVGFSINTLTMFA 397

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  IG  V+D +VV + +     ++   +S  +   KS+++  G  V   +      +P
Sbjct: 398 MVLAIGLLVDDAIVVVENV--ERVMHEEGLSPVEATKKSMDQITGALVGIGLTLSAVFVP 455

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           MA   GS       F++ +   + ++   ++ +   +   +     K
Sbjct: 456 MAFMSGSTGVIYRQFSVTIVSAMGLSVMVALILTPALCATMLKPMKK 502



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 68/186 (36%), Gaps = 8/186 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  +S + + + +   ++ W      I  + L I   L 
Sbjct: 853  FGVEWNGLSYEERLSGNQAPALYALSIVVVFLVLAALYESWSVPFSVILVVPLGIIGALI 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 G+  ++    A+LT +G +  + +++ +  ++    Y    +  D    ++   L
Sbjct: 913  AMNARGLPNDVFFQVALLTTVGLATKNAILIVEFAKEY---YDKGATLVDATLHAVRVRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TSMA  + V+P+A+    G     +    +  G++ +    IF      + +   
Sbjct: 970  RPILMTSMAFGLGVVPLAISTGVGSGSQNAIGTGVLGGMMSSTFMGIFFIPIFFVVVERL 1029

Query: 827  RAKNAR 832
             +K  +
Sbjct: 1030 FSKREK 1035


>gi|291443391|ref|ZP_06582781.1| export membrane protein SecF [Streptomyces roseosporus NRRL 15998]
 gi|291346338|gb|EFE73242.1| export membrane protein SecF [Streptomyces roseosporus NRRL 15998]
          Length = 372

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 146/326 (44%), Gaps = 13/326 (3%)

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
              ++ + +         L    +   F+R R    G+SIL +I +I  +   GL  GI+
Sbjct: 5   PPNRRRREMSRLGNFGARLYRGEVGYDFIRNRKIWYGVSILITITAIIGVAVGGLRMGIE 64

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           FKGG          +  +                Q         +R+Q    D+     +
Sbjct: 65  FKGGAVFTTDTKAQISTAQATDVATEASGHQAIVQELGNGG---LRIQITEVDTAKANEI 121

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
            E +  ++            ++VGP    ++  K   G+ +  I ++IY+ I F+W  A+
Sbjct: 122 KETLSDELGLPANDINA---DLVGPSWGEQIANKAWTGLGVFMILVVIYLAIAFEWRMAV 178

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT- 753
            A+  LI DIT T+G +AL G E     V  +LT++GYS+ D VVV+D +++  K  T  
Sbjct: 179 AALIALIHDITITVGVYALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEGQKDITKQ 238

Query: 754 -SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVV 807
              ++ ++ ++SIN TL RS+ T++ A + V  +   GG V     +   ++ +  G+  
Sbjct: 239 TRFTYSEIANRSINSTLVRSINTTVVALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAA 298

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
            A SSIFIA P++  + +   +   +
Sbjct: 299 GAYSSIFIATPLVADLKERDPQMKAL 324


>gi|77459119|ref|YP_348625.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas fluorescens Pf0-1]
 gi|77383122|gb|ABA74635.1| putative multidrug efflux system transmembrane protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 1032

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 84/687 (12%), Positives = 180/687 (26%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P   P               + +    
Sbjct: 8   RPVFAWVVALFILLAGALAI-----PQLPVAQYPDVAPP-------------QIEIYAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  + +     +   L                   I  +F      E     V   
Sbjct: 50  PGASAQTVDESVVSLIEEELNGADHLLYFESQSSLGSATIKATFQPGTNPELAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V S+L     +  L         ++L            +  S  + R  +++I   +
Sbjct: 110 LKVVESRLPQAVNQQGLQVEKVSAGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRID 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +L     T A ++   V  N        G      +  
Sbjct: 170 GVGKAQLYGA-ERAMRIWVDPQKLIGFNLTPADVNAAIVAQNAQVSAGSIGDLPNPSTQE 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +  K ++S                +    +                 +        
Sbjct: 229 ITATILVKGQLS-------------TPEEFADIVLKANPDGSTVRIKDVARVEIGSQEYQ 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G  L                +   T          L           +          S
Sbjct: 276 FGTRLNGKPSTAVGVQLSPGANALSTATLIRAKMDELSRYFPAGVEYKIPYDTSPFVKVS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +    T      LV  V+F+ +   ++ L+    + + ++ T A +  LG ++ + ++ 
Sbjct: 336 ITKVIYTLGEAMLLVFAVMFLFLQNIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +  S   +     S+    I    +  +   + +
Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMATEGLSPKEATRKAMSQITGAIIGITLVLVAVFIPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            F  G      R F+++M  SIL S F A+++  A+   +         ++K        
Sbjct: 456 AFMQGSVGVIYRQFSLSMATSILFSAFLALTLTPALCATLLKPIAKGEHHEKTGFFGWFN 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                LI           +  G  + I   +     L    L             +   +
Sbjct: 516 RRFEQLIDRYQGWVGYALKRTGRYLLIYVVLLVGLGLCFARLPSSFLPVEDQGYTITDIQ 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     ++ ++  +       G  +  V L +    S     +     K  ++   
Sbjct: 576 LPPGASKNRTVQVVEQIEAHNAGEPGVGDSTVILGFSFSGSGQNAALAFTTLKDWSQRGS 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             +  +          ++       V+
Sbjct: 636 DDSASSIADRANIALSQIKDAVAFAVL 662



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q      +        +        ++++   ++     +++   
Sbjct: 257 STVRIKDVARVEIGSQEYQFGTRLNGKPSTAVGVQLSPGANALSTATLIRAKMDELSRYF 316

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I K I  +  + + +   +++  +   + L     + + + 
Sbjct: 317 PAGVEYKIPYDTSPFVKVSITKVIYTLGEAMLLVFAVMFLFLQNIRYTLIPTLVVPVALM 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++  IG  V+D +VV + +     + T  +S ++   K++
Sbjct: 377 GTFATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMATEGLSPKEATRKAM 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  +  ++      +PMA   G   VI   F++ MA  I+ +A  ++ +   +   
Sbjct: 435 SQITGAIIGITLVLVAVFIPMAFMQGSVGVIYRQFSLSMATSILFSAFLALTLTPALCAT 494

Query: 823 IYD 825
           +  
Sbjct: 495 LLK 497



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/409 (11%), Positives = 121/409 (29%), Gaps = 16/409 (3%)

Query: 416  SIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            S   +      +  +  L    +++ +++       S+    + A S I D+   A++  
Sbjct: 605  STVILGFSFSGSGQNAALAFTTLKDWSQRGSDDSASSIADRANIALSQIKDAVAFAVLPP 664

Query: 475  VVL-------FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
             V        F F      G      +     +  A      +M                
Sbjct: 665  PVDGLGTSSGFEFRLQDRGGLGHATLMEARTQLLEAAEKSPILMNVRESALAEAPQVQLE 724

Query: 528  LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            + R       I+   +         S   +           +      +      +L   
Sbjct: 725  VDRKQANALGISFADVGNVLSTAIGSSYVNDFPNQGRMQRVVVQAEGDRRSQVDDLLKMH 784

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              + +     L +      +       +          G+        E +++    +  
Sbjct: 785  VRNEAGKMVPLSAFVRATWTQGPAQLTRYNGYPAISISGEPKPGHSTGEAMEEIERLVAQ 844

Query: 648  LSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                   E  G  +   L   +  + + +S + + + +   ++ W      +  + L + 
Sbjct: 845  GPKGLGQEWTGLSLQERLSGSQAPILLGLSLLIVFLCLAALYESWSIPTSVLLVVPLGVL 904

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              +    L G+  ++     ++T+IG S  + +++ +  +    LY       D   ++ 
Sbjct: 905  GAVLAVTLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAK---SLYDEGHDLIDATLQAA 961

Query: 766  NETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASS 811
               L   V TS+A  + V+P+A+  G+   S       +  G++ A  +
Sbjct: 962  RLRLRPIVMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLA 1010


>gi|32476773|ref|NP_869767.1| acriflavine resistance protein B [Rhodopirellula baltica SH 1]
 gi|32447319|emb|CAD77145.1| acriflavine resistance protein B [Rhodopirellula baltica SH 1]
          Length = 1072

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 67/544 (12%), Positives = 162/544 (29%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G +           + ++PS  P   +                  
Sbjct: 30  RPIFASVLSFVIVLVGGI-----VYFTLPVSQYPSVAPPTVL---------VRASYPGAT 75

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + +        S       ++T++F      ++    V   +  
Sbjct: 76  PEVIADTVATPIEQEMNGVDDMLYMESSSSSDGTMQLTVTFKLGTDLDDAQVLVQNRVAI 135

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    ++  + TT +    +++   N        +  S     +  D +   +   
Sbjct: 136 AESRLPEQVRQIGVTTTKQIPDMLMVVHLNSPDDSRDQLYISNYAFLRVRDALMRLDGVG 195

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +      +    D  ++  +  T  ++       N      + G     ++   Q 
Sbjct: 196 EIRIAGGNEYAMRIWLDIEKMTHVDLTAGEVVDAIQAQNIQVAAGVIGQPPTDETGDFQL 255

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +              +  +    I       R         I           
Sbjct: 256 NVTTQGRL-------------IREDEFGDIIVKRGEDGRITRLRDVARIELGAQDYSRLS 302

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +   +   +   T      + + +           +          S + 
Sbjct: 303 YLDGKSAIAVLVYQRPGTNAVDTAAEVKRVMSEMSEEFPQGIGYEIAYNPTDYVEDSIAE 362

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I    V++ +F+ +   +  ++   +I +++I T A++  LG TL   S+ G+V
Sbjct: 363 VFETLFITTIFVVLTVFLFLHGWRPTIIPVIAIPISLIGTFAVMQFLGVTLNTLSLFGLV 422

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +     +  +   +         S +  + +  +   V   F  
Sbjct: 423 LAIGIVVDDAIVVVENVERLIAEGMTAREATHKAMDEVGSALIATTLVLIAVFVPTVFVP 482

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S  IS F ++++  A+   ++R K            F       
Sbjct: 483 GISGQFYQQFALTISISTAISTFVSLTLSPALCALLLRPKNAPKNRTGKAIDFLFGWFFR 542

Query: 539 AIQF 542
               
Sbjct: 543 LFNR 546



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 77/215 (35%), Gaps = 10/215 (4%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                 +    RV+  + ++  + +      N          E+     +  I   + + 
Sbjct: 320 TNAVDTAAEVKRVMSEMSEEFPQGIGYEIAYNPTDYVEDSIAEVFETLFITTIFVVLTVF 379

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++     W   +  +  + + +  T       G+  N  ++  ++  IG  V+D +VV 
Sbjct: 380 LFL---HGWRPTIIPVIAIPISLIGTFAVMQFLGVTLNTLSLFGLVLAIGIVVDDAIVVV 436

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFA 798
           + +    +L    ++ R+   K+++E     + T++      +P        G     FA
Sbjct: 437 ENV---ERLIAEGMTAREATHKAMDEVGSALIATTLVLIAVFVPTVFVPGISGQFYQQFA 493

Query: 799 IPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
           + ++    ++   S+ ++  +  L +    A   R
Sbjct: 494 LTISISTAISTFVSLTLSPALCALLLRPKNAPKNR 528



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 63/213 (29%), Gaps = 9/213 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                   +      +E +  +                  +    ++    + V+   +A+
Sbjct: 857  TTVPGFSTGQSLATMEQLADQNLPPGFGYEWTEIAFQERQAGNTIVFLFPLAVLFVFLAL 916

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
                     W   L  I  + L +   L      G++ N+      + LIG +  + +++
Sbjct: 917  S---AQYESWLLPLAIILIVPLCLLFALSGVWFRGMDNNVLTQIGFIVLIGLACKNAILI 973

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +  +             D    +    L   + T+ +  + V+P+ V    G  +    
Sbjct: 974  VEFAKAEEDAGKNRF---DAAIAACRLRLRPILMTAFSFILGVVPLLVATGAGFEMRRVL 1030

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               +  G++      +F+     + +  +  K 
Sbjct: 1031 GTAVFAGMLGVTVFGLFLTPVFYVMLRRFAKKK 1063


>gi|298717518|ref|YP_003730160.1| RND efflux system inner membrane transporter component [Pantoea
           vagans C9-1]
 gi|298361707|gb|ADI78488.1| Putative RND efflux system, inner membrane transporter component
           [Pantoea vagans C9-1]
          Length = 1053

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/686 (11%), Positives = 187/686 (27%), Gaps = 34/686 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   G+L           + ++P   P          +          
Sbjct: 8   RRPVFAWVIALCIMMFGILSI-----NSLPVAQYPDVAPP---------QISIQATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGI--GVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             + +   +    ++  + L          +    Q KI ++F      +    +V   +
Sbjct: 54  SAETLESSVTQVIEQQLTGLDGLLYFDATSTASTGQVKINVTFQQGTDPDIAQVQVQNKV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q   S+L        +     +   +++         S + + +  ++    D +     
Sbjct: 114 QQAESRLPTAVTSQGVTVQKAQSDFLLILALYDKTNKSSSSDVADYMVSNMEDSLARVPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP+RL       + ++      N        G +        
Sbjct: 174 VGSVQVFGA-EYAMRIWLDPARLTSFSLMPSDVTTALESQNTQVSSGQLGAQPASKEQQL 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V  +  +                 +    +   +             +         
Sbjct: 233 VATVRSRSRL-------------QTPEQFRNIVLKSQADGSVVRLSDVARVEMGNEDYSS 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +      +       +  +   T E         R+             +      S 
Sbjct: 280 NVLANGHPASGIAVQLASGANALSTAEQVKAKINEFRSTMPAGYEIAYPLDSTDFVKISI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV+IV+F+ +   +  L+   ++ + ++ T  +LSL G ++   ++ G
Sbjct: 340 EEVVKTLIEAVILVVIVMFVFLQNIRTTLIPAIAVPVVLLGTFGVLSLFGYSINTLTMFG 399

Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +      +      + +          I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMREEGLPPRQATEKSMKEITGALIGIAMVLSAVFLPMT 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           FF G      R F+IT+  S+++S+  A+++  A+   +++    +S        F    
Sbjct: 460 FFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLLKPHNHESGSTGFFGWFNRSY 519

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           + +  ++       V  S+ + +    LL      Y     G +         V   +  
Sbjct: 520 ERVQARYQNGVGHVVNSSVRYLLLYGVLLIGCAGLYMRLPTGFLPTEDQGYIMVQYQLAP 579

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              E+                    +      +                 +   + +   
Sbjct: 580 GATENRTSDVRRQVQHYFATQEKDNVNVSMLVNGFSFAGNGQNAGIGFIALKNWSEREGS 639

Query: 656 IVGPKISRELIRKGIVGVIISAIAML 681
                       K + G+  + I +L
Sbjct: 640 ENSADAIAGRAMKALSGIRDAQIFVL 665



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +    +        + +        ++++    ++    +    +P 
Sbjct: 262 VRLSDVARVEMGNEDYSSNVLANGHPASGIAVQLASGANALSTAEQVKAKINEFRSTMPA 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                  +      +  I + +  +I + I ++I +++  +     L     + + +  T
Sbjct: 322 GYEIAYPLDSTDFVKISIEEVVKTLIEAVILVVIVMFVFLQNIRTTLIPAIAVPVVLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  +LFG   N   +  ++  IG  V+D +VV + +     +    +  R   +KS+ E
Sbjct: 382 FGVLSLFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMREEGLPPRQATEKSMKE 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  +M      LPM  + GS       F+I +   +V++   ++ +   +   + 
Sbjct: 440 ITGALIGIAMVLSAVFLPMTFFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 78/241 (32%), Gaps = 8/241 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
              +       S      ++      +   +      G   +     + +      +  L 
Sbjct: 795  SSNTTMVPFSSFASMKWAYGPDVLSRYNGLASYEIQGSPASGKSSGDAITAMEKLVAKLP 854

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G     +L     + +  IS I + + +   ++ W      +  + L +   
Sbjct: 855  AGNTFAWSGLSYQEKLSGNQAMSLYGISLIVVFLCLAALYESWSIPFSVMMVVPLGVIGA 914

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+E ++    A+LT+IG S  + +++ +   +    Y    S       +   
Sbjct: 915  LLATTLRGLENDVYFQVALLTIIGLSAKNAILIVEFAEE---QYRKGESLVRAATHAATM 971

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + TS+A    VLP+A+    G +   +    +  G + A   +IF      + + 
Sbjct: 972  RLRPIIMTSLAFTAGVLPLAISTGAGANSRIAIGTGIIGGTLTATLLAIFFVPLFFVLVR 1031

Query: 825  D 825
             
Sbjct: 1032 R 1032


>gi|257460759|ref|ZP_05625860.1| protein-export membrane protein SecF [Campylobacter gracilis
           RM3268]
 gi|257442090|gb|EEV17232.1| protein-export membrane protein SecF [Campylobacter gracilis
           RM3268]
          Length = 322

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 97/285 (34%), Positives = 163/285 (57%), Gaps = 4/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM+ R++   +S +  I SI L F  G++YGIDF GG  + V  +    L  +R   E
Sbjct: 10  YDFMKFRYFTFTLSAVLIIGSIALFFIKGVSYGIDFSGGTLIQVKYDVKAPLDEIRKRFE 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +  +G+I+   F  ++   +R      +      +      KI +      I+  +IVGP
Sbjct: 70  AANLGNINVTEFGSDQEVTIRYSGAASELGDNPALAAQ---KILQGSGNFDIRKVDIVGP 126

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL   GI+ V +S   +L+YI +RF+W FA+ A+ + + D+   +G   L G++FN
Sbjct: 127 KVGEELRTNGILAVCVSFALILVYITLRFEWRFAVAAVLSDLHDVVVAVGAMILAGVDFN 186

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+LT++GYS+ND +VV+DR+R+ +K  + SI   ++I++SI+ TL R++ TS+  
Sbjct: 187 LEILAALLTIMGYSLNDTIVVFDRIREGVKD-SKSIKLDEVINESISHTLSRTLLTSLTT 245

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            I ++ + VWGG +I  F+  M  G+V    SS+F+AAP+L+   
Sbjct: 246 LIVIVILFVWGGEMIHGFSFVMLIGVVAGTFSSVFVAAPMLILFK 290


>gi|268679792|ref|YP_003304223.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617823|gb|ACZ12188.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 1042

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/688 (11%), Positives = 181/688 (26%), Gaps = 50/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GL+           ++ +P   P               + +E   
Sbjct: 9   RPIFATVLSIVVIIAGLMSI-----RALPIEEYPEVTPP-------------QVSVEATY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +        +   +       I + F      +     V  
Sbjct: 51  AGASAETISKTVAAPLEQQINGVEDMIYMSSTASSTGSLSINVYFKIGTDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   +KL  + +   +  T +    + +            I  +   +   ID++   
Sbjct: 111 RVQAALNKLPSEVQAQGVTVTKQSSTILKVISIISPNNSYDEIYMANYALINVIDELKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +     P +L +   T   +       N       F     + S 
Sbjct: 171 EGVGNASLFGNQNYSMRVWMKPDQLAKYNLTPTDVINAISEQNAQFATGRFNQSPSKTSQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  +                 K  +    I                 +       
Sbjct: 231 AYTFTVTTQGR-------------FDKVEEFEKIILKSNKDGSTLRLKDVARLELGAESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L    +       ++  +   T +        L                      
Sbjct: 278 DVTSTLNGQTMVPIGIYLQSGANALDTAKRVDEAMERLSKSFPENMEYRTPYDTTKFIQI 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV+ ++++ +   +  ++   +I +++I T A +  LG ++ L ++
Sbjct: 338 SVNEVVKTFVEALLLVIAIVYLFLQNMRATIIPVLAIPVSIIGTFAGMYALGYSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            G+VL IG+ VD  I+V E +     + K  SV  +           +    +      +
Sbjct: 398 FGLVLAIGIVVDDAIIVIENVERILHSEKEISVKEATIKAMQEVTGPVVAIVLVLCAVFI 457

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F G   G   + FAIT+ +S++IS   A+++  A+    +  K+ K           
Sbjct: 458 PVSFMGGFTGQMYQQFAITIVISVIISGMVALTLTPALCAIFLSKKEPKPFWF------- 510

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    F  +  W      L    S+  +    +  G+ +    ++        D  
Sbjct: 511 --VRKFNEFFDASTNWFTSGVSLVVRHSVISVIVFAVLMGMTYGLFQKVPSSLVPMEDKG 568

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            + +         +        +   +  Q             +++          + + 
Sbjct: 569 YLIAVTALPPASSLHRTQAVSAQVSDITNQMPEIAYNISISGFDLLSGAAKTNAATTFLP 628

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAM 680
             +    K   +        +  +   +
Sbjct: 629 LKDWSERKAPNQHSEAISGALNGALFGV 656



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +W   L  +T +   +   +    L G+  ++     +L LIG S  + +++ +     M
Sbjct: 892  RWLMPLAVVTAVPFAVFGAIMAVYLRGLSNDIYFQIGLLVLIGLSAKNAILIVEFA---M 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +      S  D   ++        V TS+A  I VLP+A+    G     +    +  G+
Sbjct: 949  QAQERGKSIFDATLEAARLRFRPIVMTSLAFTIGVLPLALSSGAGAGSRHAIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A + +IF        +    AK ++
Sbjct: 1009 IAATTIAIFFIPLFYNALARLNAKFSK 1035



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/386 (9%), Positives = 113/386 (29%), Gaps = 25/386 (6%)

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
            I    +       +     +R  + +           V +       ++  +I    + 
Sbjct: 90  SINVYFKIGTDPDQATINVNNRVQAALNKLPSEVQAQGVTVTKQSSTILKVISIISPNNS 149

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
              ++ A   +  ++  + R + + +  +     + +       Q  +       +    
Sbjct: 150 YDEIYMANYALINVIDELKRVEGVGNASLFGNQNYSMRVWMKPDQLAKYNLTPTDVINAI 209

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE----------------- 599
           S  +                      V      D       +                  
Sbjct: 210 SEQNAQFATGRFNQSPSKTSQAYTFTVTTQGRFDKVEEFEKIILKSNKDGSTLRLKDVAR 269

Query: 600 ---SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
                +  D++          +        +++   + ++   +++++  P +    T  
Sbjct: 270 LELGAESYDVTSTLNGQTMVPIGIYLQSGANALDTAKRVDEAMERLSKSFPENMEYRTPY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
              K  +  + + +   + + + ++  +++  +     +  +  + + I  T       G
Sbjct: 330 DTTKFIQISVNEVVKTFVEALLLVIAIVYLFLQNMRATIIPVLAIPVSIIGTFAGMYALG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG---RS 772
              NL  +  ++  IG  V+D ++V + + + +      IS ++   K++ E  G     
Sbjct: 390 YSINLLTLFGLVLAIGIVVDDAIIVIENV-ERILHSEKEISVKEATIKAMQEVTGPVVAI 448

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFA 798
           V    A FI V  M  + G +   FA
Sbjct: 449 VLVLCAVFIPVSFMGGFTGQMYQQFA 474


>gi|323972316|gb|EGB67526.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli TA007]
          Length = 683

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/671 (10%), Positives = 173/671 (25%), Gaps = 52/671 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +            +      
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPIAKGDHGEGKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           D +         + V   I+    +   +         + +G     
Sbjct: 516 FNRMFEKSTHHYTDSVGGILRSTGRYLVLYLIIVVGMAYLFVRLPSSFLPDEDQGVFMTM 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V           +  L  +    ++ +  + E  F V      G           +K   
Sbjct: 576 VQLPAGATQERTQKVLNEVTHYYLTKEKNNVESVFAVNGFGFAGRGQNTGIAFVSLKDWA 635

Query: 643 TEIVPLSTIQN 653
                 + ++ 
Sbjct: 636 DRPGEETKLKR 646



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492


>gi|304410276|ref|ZP_07391895.1| protein-export membrane protein SecD [Shewanella baltica OS183]
 gi|307302013|ref|ZP_07581771.1| protein-export membrane protein SecD [Shewanella baltica BA175]
 gi|304351685|gb|EFM16084.1| protein-export membrane protein SecD [Shewanella baltica OS183]
 gi|306914051|gb|EFN44472.1| protein-export membrane protein SecD [Shewanella baltica BA175]
          Length = 604

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 165/527 (31%), Positives = 274/527 (51%), Gaps = 34/527 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  ++  P  L  S+    PS +       I LGLDLRGG   +L+VD D       +
Sbjct: 94  TLVSSMVTDPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGE 153

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
              D LR F++++ I   S+   Q N++ L+  D+  +  +   +               
Sbjct: 154 ALVDSLRQFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQ------- 206

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
               L  T    + I LSQ    ++ +  ++Q+++++R RI+++GI+E+ +QR G HRI 
Sbjct: 207 ----LSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGDHRIR 262

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           I+LPG QDP+  + ++G TA ++F +V               L D  G    V     + 
Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLNDKSGKPIYVSRTPVLG 317

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306
           G H+  A A+         V+I+ D +G ++  E +R NIGKP+A               
Sbjct: 318 GDHIVDARASLGEMGM-AEVNINLDRVGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAK 376

Query: 307 --------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                      Q+    + +I+G  T + A  LA +LRAGS+   + IVEER +G  LG+
Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
           ++I  G  A+  G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A LTLP I
Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG+VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STIFD+N T +I  VVL
Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +  G G ++GFA+T+GL +L SMFT I   RA++  +      + + 
Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    + +          +    ++ L       G    Q
Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I  G   + +     L+++ + ++  
Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID   +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  ++  +Y   A  
Sbjct: 581 TGIFASRALINLVYGRDASR 600


>gi|291286174|ref|YP_003502990.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290883334|gb|ADD67034.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 1049

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/687 (11%), Positives = 190/687 (27%), Gaps = 51/687 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+            ++++P   P               +V+    
Sbjct: 8   RPVFSWVIAIIIMLAGVFAI-----ETLPIEQYPKIAPP-------------SVVINASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGV----FSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   L            S       IT++F      +    +V  
Sbjct: 50  PGASAETLENSVTQVIEQNLTGIDNMRYFSASSDSSGNMSITVTFEQEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +QG+ S L    ++N +         ++L     +    +  +    I    +D I   
Sbjct: 110 KVQGILSSLPQIVQQNGVTVNKSSSGFLLLVGLYSEDGSMNQYDIGDYINSNMVDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P ++     T + +       N        G        
Sbjct: 170 VGVGDVTVFG-QEYSMRIWLNPEKMHSYGVTASDVISAVESQNADIAAGQLGGTPSVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++S I              +    +        +        +       
Sbjct: 229 QLNATITAQTKLSSIE-------------EFENILLKVNTDGSKLLLKDVATMELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    S  +  +   T +        L          +           
Sbjct: 276 DIVSRFNGRPASGVAVSLASGANALDTADHVKEKVEELAKYMPDGLKYVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++ T  +LS  G ++   ++
Sbjct: 336 SIEEVVKTLLEAIVLVFLVMFLFLQNFRATLIPTIAVPVVLLGTFGVLSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475
             +VL +GL VD  I+V E +    + +      +      +     I  + + + +   
Sbjct: 396 FAMVLAVGLLVDDAIVVVENVERLMSEEGLPPKEATKKSMDQITGALIGIALVLSAVFVP 455

Query: 476 VLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FF G      R F+IT+  ++ +S+  AI +  A+   +                   
Sbjct: 456 MAFFSGSTGVIYRQFSITIVSAMALSVLVAIILTPALCSTLLKPVEKGHQERTKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + N      L    +     RA  + +   ++ +                + +G + L +
Sbjct: 516 NRNFNKSRDLYKKSVGYVAARAVRFILLYGVILAAMIFMFTKIPTSFLPDEDQGIMMLML 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +     +   RSN+E ++   ++ +  +    F V      G           +K    
Sbjct: 576 NSPAGSTMERTRSNMEDVEEYFLTQEKDNIISIFTVTGFSFAGQGQNTGLGFVKLKDWEE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGI 670
              P  ++Q+      +    +    +
Sbjct: 636 RPNPDQSVQSISSRATQRLWAMKDAMV 662



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 79/197 (40%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +      +E + K + + +      +T         E+++  +  +++  + M +++ 
Sbjct: 301 DTADHVKEKVEELAKYMPDGLKYVYPYDTTPFVKISIEEVVKTLLEAIVLVFLVMFLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G  + FG   N   + A++  +G  V+D +VV + + 
Sbjct: 361 ---NFRATLIPTIAVPVVLLGTFGVLSAFGFSINTLTMFAMVLAVGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +  ++   KS+++  G  +  ++      +PMA + GS       F+I + 
Sbjct: 417 -ERLMSEEGLPPKEATKKSMDQITGALIGIALVLSAVFVPMAFFSGSTGVIYRQFSITIV 475

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   +I +   +
Sbjct: 476 SAMALSVLVAIILTPAL 492



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 55/408 (13%), Positives = 131/408 (32%), Gaps = 19/408 (4%)

Query: 440  EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
            ++  +  +   S+    SRA   ++      +  T        G   GF + +       
Sbjct: 631  KDWEERPNPDQSVQSISSRATQRLWAMKDAMVFVTYPPAITELGRSSGFNMQILDRGGQG 690

Query: 500  MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
                +   + ++    +  K+ +I  N L         + I+  ++    V   I     
Sbjct: 691  HEVLVEAKQELLQKARQNPKLTNIRFNGLEDVPQYKLDLDIEKAKSLGISVADIIQTLGA 750

Query: 560  SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
            +    + +   YG   K     G    R +   + +  +++     +SF+ F        
Sbjct: 751  AWGSEYINDFTYGGRIKKVYVQGAAPYRMLPEDINKWYIKNSSGEMVSFEAFSKGYWKYG 810

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI--------- 670
              Q    + V+   +     + ++    +  +       P    +L   GI         
Sbjct: 811  PPQLARFNGVSSMEIQGGPVQGVSSGEAMDIMAQLVEELPGDDIDLAWSGISYEERAAGS 870

Query: 671  -VGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               ++ +   +++++    +   W      I  + L I   +    +F +  ++     +
Sbjct: 871  QTTLLYALSLLIVFLCLAALYESWSIPFAVILIVPLGIVGAVAATLIFKMSNDVYFQVGL 930

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT IG +  + +++ +  +    LY            +  + L   + TSMA  + V P+
Sbjct: 931  LTTIGLASKNAILIVEFAK---SLYEKGHGLVASAMMAAQQRLRPIIMTSMAFILGVTPL 987

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A     G +   +  I +  G+  A   +I       + I +   K  
Sbjct: 988  ATSSGAGSASQNAIGIGVIGGMFTATFLAILFVPMFFILIENMFGKKK 1035


>gi|288929878|ref|ZP_06423720.1| multidrug efflux RND transporter MexF [Prevotella sp. oral taxon
           317 str. F0108]
 gi|288328697|gb|EFC67286.1| multidrug efflux RND transporter MexF [Prevotella sp. oral taxon
           317 str. F0108]
          Length = 1062

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 69/535 (12%), Positives = 157/535 (29%), Gaps = 40/535 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  IG+L      L    + +FPS  P              ++V   D
Sbjct: 7   RRPVLAIVVSLVIVFIGILS-----LSNLPITQFPSISPPK-----------VNVV--AD 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N  + +     L   L    G+         +   +I + F         A  V 
Sbjct: 49  YPGANNELMIKSVLIPLEQALNGVPGMKYIESDAGNDGEGEINIVFKLGTDPNVDAINVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL     +  +  + E+   ++      D                   ++  
Sbjct: 109 NRVSAATNKLPPAVVREGVKISREEPNILMYINLYSDDPKVDQNFLFNYADINISPELAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P +L     +   ++      +        G    + +
Sbjct: 169 VDGVGDLDILGTRSFAMRVWLKPDKLTAYGLSATDITDALQQQSIEASPGKLGESSGKHA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++     +                +    +       +        ++     V
Sbjct: 229 QSFEYVLKYPGRYT-------------TPEEYSNIVVKSTPDGQFIRLKDVADVSLGSEV 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +    I+      A L+          +         
Sbjct: 276 YDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDMPKGMHYELSYDISRFLD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV  V+F+ +   +  L+   ++ +++I + A+++  G TL + S
Sbjct: 336 ASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLIGSFAVMNAFGITLNMIS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +V+ IG+ VD  I+V E +  +  ++      +           I    +      +
Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVKIAKEGLEPLEATQKAMKEISGAIVAVTLVMASVFI 455

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            + F G   G   R F+IT+   I++S FTA+++  ++   I+  ++   I    
Sbjct: 456 PVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCALILTRERDNHIKKTW 510



 Score = 95.1 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + + L  V       ++ DI           +   Q    ++    + ++     + + +
Sbjct: 259 QFIRLKDVADVSLGSEVYDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDM 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDIT 705
           P            +     I K I  +  + I +  +       W  AL     + + + 
Sbjct: 319 PKGMHYELSYDISRFLDASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLI 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            +      FGI  N+ ++ A++  IG  V+D +VV + +  N+K+    +   +   K++
Sbjct: 379 GSFAVMNAFGITLNMISLFALVMAIGIVVDDAIVVIEAV--NVKIAKEGLEPLEATQKAM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  V  ++      +P+A  GG        F+I +A GIV++  +++ +   +   
Sbjct: 437 KEISGAIVAVTLVMASVFIPVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCAL 496

Query: 823 IYDWRAKN 830
           I      N
Sbjct: 497 ILTRERDN 504



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 10/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V  +       +  +               +    +   S A         K I E+  
Sbjct: 789  NVKNNQGEMVPYADFLHMEKVYGMSEMTRHNLYNSAEVTGSAAAGYSSGQAIKAIEEVAT 848

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRFK---WYFALGAITTLILD 703
             +     +     I+++ + +G   +II  +    +Y+ +  +   +   L  IT L   
Sbjct: 849  STLPHGYDYDFAGITKDEVDQGNQALIIFIVCLTFVYLILSAQYENFLLPLPIITCLPAG 908

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I  T  F  L G+E N+ A  A++ LIG    + V++ +     ++ +    S R    +
Sbjct: 909  ICGTFIFLKLTGLENNIYAQVAMVMLIGLLGKNAVLMVE---YAVQRHNLGKSIRAAAIE 965

Query: 764  SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    +LP+    G   I   +     A G++      + +   + 
Sbjct: 966  GAAARFRPILMTSFAFIAGLLPLVFAHGAGAIGNRTIGTAAAGGMLFGTCFGLILVPGLY 1025

Query: 821  LFIYD 825
                 
Sbjct: 1026 YIFGR 1030


>gi|110643511|ref|YP_671241.1| acriflavine resistance protein F [Escherichia coli 536]
 gi|110345103|gb|ABG71340.1| acriflavine resistance protein F [Escherichia coli 536]
          Length = 1034

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         +++     D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVPGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|93005936|ref|YP_580373.1| preprotein translocase subunit SecD [Psychrobacter cryohalolentis
           K5]
 gi|92393614|gb|ABE74889.1| protein-export membrane protein SecD [Psychrobacter cryohalolentis
           K5]
          Length = 625

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 152/527 (28%), Positives = 259/527 (49%), Gaps = 41/527 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG   VLEVD D  +   L   S ++R  L+ E I
Sbjct: 103 NLAQTTPQWLRDIGAKPMKLGLDLRGGVRFVLEVDMDKALEQRLTSASRDIRRDLRAERI 162

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            V  ++  +  + L F+D+  +    + +   +    +           +      + + 
Sbjct: 163 AVKGIKNDKRSVVLHFSDTDTRNRAQNVLQSSMGNTFAL-------QSSIDEQGPALILA 215

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            +   +D++ S+A+ Q++  +R RI ++G++E+ +Q  G+ RI+++LPG QD +  +++L
Sbjct: 216 YNDATLDEINSYAVNQNLTTLRNRIAELGVTEALVQSQGASRIVVELPGVQDTAEAKRVL 275

Query: 207 GTTAKMSFHKVLPNNS-----KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F  V                        DG   L+E +  ++G  +       
Sbjct: 276 GRTANLEFRMVAEGAENYTGGIPPAGTEAFPFETLDGPPVLLERQAIVTGDKVTN-AQTG 334

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------------AV 296
             ++  P V I+ D  G +     TR  +GK +                           
Sbjct: 335 IDESGSPEVSITLDSAGGKLMQNATRTAVGKQMAVLFIENKQRIAYEEDPVTGETTEVRT 394

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +      QA+     +I+G  +   A  LA +LR+G+L   +  VEER +G  L
Sbjct: 395 PYAETKVINRANIQAVLGSSFRITGLDSSAEAAELALLLRSGALAAPMYFVEERTIGPSL 454

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G ++I KG  +   G +L+  FMI+ Y  +G++A+ ++  NVI+ ++++S+LG++LTLP 
Sbjct: 455 GQENIDKGLFSTQVGYLLVFAFMIIFYRLFGVIANIALAFNVIIIISIMSILGSSLTLPG 514

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAGIVL IG+AVD+N+L+ ERIREE         ++  GF RAYS+IFD+NIT L+   +
Sbjct: 515 IAGIVLTIGMAVDANVLIFERIREEIANGVRPKSAIVAGFDRAYSSIFDANITTLLVAFI 574

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           LF  G G ++GFAIT+ + I+ S+FTAI + RA++      +K    
Sbjct: 575 LFAIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRKSIKR 621



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 33/185 (17%), Positives = 76/185 (41%), Gaps = 4/185 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                   +GP + +E I KG+    +  + +  ++ I ++  F + A   L  ++   +
Sbjct: 442 MYFVEERTIGPSLGQENIDKGLFSTQVGYLLVFAFMIIFYRL-FGVIANIALAFNVIIII 500

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++ G    L  +A ++  IG +V+  V++++R+R+ +         +  I    +  
Sbjct: 501 SIMSILGSSLTLPGIAGIVLTIGMAVDANVLIFERIREEIANGVR---PKSAIVAGFDRA 557

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                  ++   +    +   G   I  FAI +A GIV +  ++I +   ++   Y  R 
Sbjct: 558 YSSIFDANITTLLVAFILFAIGTGPIKGFAITLAIGIVSSLFTAILVTRALIQIAYGKRK 617

Query: 829 KNARI 833
              R+
Sbjct: 618 SIKRL 622


>gi|46581220|ref|YP_012028.1| multidrug resistance protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450641|gb|AAS97288.1| multidrug resistance protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234888|gb|ADP87742.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio vulgaris RCH1]
          Length = 1070

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/556 (10%), Positives = 144/556 (25%), Gaps = 41/556 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        + ++P   P             + + +    
Sbjct: 8   RPVFAWVIAIIIMLAGALSIL-----SLPVSQYPKIAP-------------TSVNISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                  V   +    ++    +        +     Q  ITL+F  S   +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQKMKGIDSLRYMSSTSDATGQVSITLTFDASTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +         +++     D       + S       +D I   
Sbjct: 110 KLALATPMLPEAVQRQGITVNKSTSSFLMIIALASDDPSLTGRDLSDYAATYLLDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L     T A +       N        G        
Sbjct: 170 DGVGETQLFGAQ-YAMRVWLDPHKLMNYRMTPADVRSAITAQNTQISVGQIGGTPAVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G  + +  +  +                 +    +   E             +       
Sbjct: 229 GMSFTILSQSLL-------------QTREQFERIVLRVEQDGSTVRLADVARVELGSENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T++        L          +           
Sbjct: 276 DAVSHFNGKPSTGIAIKLATGANALDTVKRVRTTMEGLAKNLPEGIRCVFPYDTTPFVRV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+++ +   +  ++   ++ + ++ T   L+  G ++ + ++
Sbjct: 336 SIEEVVKTLAEAIVLVFLVMYLFLQNIRATIIPTIAVPVVLLGTFGALAAFGFSINMLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +           +    +      + 
Sbjct: 396 FGVVLAIGLLVDDAIVVVENVERIMTEEGLPPREATRKSMGEITGALVGIALVLSAVFIP 455

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G +    R F++T+  ++ +S+  A+ +  A+    ++               + 
Sbjct: 456 MAFIKGSSGVIYRQFSLTIVSAMTLSVVVALVLTPALCATFLKPLHKHEHQAQGGFFGWF 515

Query: 534 IPDCIAIQFMRARFWG 549
                       +   
Sbjct: 516 NRMFDRTSRGYRKQVT 531



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/422 (10%), Positives = 121/422 (28%), Gaps = 11/422 (2%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L  + +T        I L    + D +I   +   +       +  ++         +  
Sbjct: 75  LRYMSSTSDATGQVSITLTFDASTDPDIAQVQVQNKLALATPMLPEAVQRQGITVNKSTS 134

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              +   +A+      G   +  +A T  L  +      +   +           +    
Sbjct: 135 SFLMIIALASDDPSLTG-RDLSDYAATYLLDPISR-VDGVGETQLFGAQYAMRVWLDPHK 192

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +                       G                    +     +   ++ + 
Sbjct: 193 LMNYRMTPADVRSAITAQNTQISVGQIGGTPAVPGQGMSFTILSQSLLQTREQFERIVLR 252

Query: 585 ANRP---VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +    V L+ V       +  D            +        +++   + +    + 
Sbjct: 253 VEQDGSTVRLADVARVELGSENYDAVSHFNGKPSTGIAIKLATGANALDTVKRVRTTMEG 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           + + +P               R  I + +  +  + + + + +++  +     +     +
Sbjct: 313 LAKNLPEGIRCVFPYDTTPFVRVSIEEVVKTLAEAIVLVFLVMYLFLQNIRATIIPTIAV 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G  A FG   N+  +  V+  IG  V+D +VV + +     +    +  R+ 
Sbjct: 373 PVVLLGTFGALAAFGFSINMLTMFGVVLAIGLLVDDAIVVVENV--ERIMTEEGLPPREA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             KS+ E  G  V  ++      +PMA      G +   F++ +   + ++   ++ +  
Sbjct: 431 TRKSMGEITGALVGIALVLSAVFIPMAFIKGSSGVIYRQFSLTIVSAMTLSVVVALVLTP 490

Query: 818 PI 819
            +
Sbjct: 491 AL 492



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 79/264 (29%), Gaps = 13/264 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +      V   +   +     +  S   G    + ++G     +     PG S  + 
Sbjct: 779  MMPEDINAWHVRNAQGNMVPFSAFSTASWTYGSPRLERYNGLPAVELVGSAAPGKSTGEA 838

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                             +             +      + +++  + +     +   W  
Sbjct: 839  MQAVEDMAAKLPPGVGISWTGLSYQERMSGSQAPALYAISILVVFLCLA---ALYESWSV 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVA--AVLTLIGYSVNDKVVVYDRMRKNMKL 750
                I  L++ +       A  G   N        +LT IG +  + +++ +     M L
Sbjct: 896  PTAVI--LVVPLGIIGALMATLGRGLNNDVFFQVGLLTTIGLAAKNAILIVEFA---MHL 950

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
              +     D   ++    L   + TS+A  + VLPMA+    G     +    +  G+  
Sbjct: 951  VKSGRPLLDATAEAARLRLRPILMTSLAFLLGVLPMAISTGAGSGSQRAIGTGVMGGMFS 1010

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A   +++      + +Y +  +  
Sbjct: 1011 ATVLAVYFVPVFFVMVYRFAMRKR 1034


>gi|256375831|ref|YP_003099491.1| protein-export membrane protein SecF [Actinosynnema mirum DSM
           43827]
 gi|255920134|gb|ACU35645.1| protein-export membrane protein SecF [Actinosynnema mirum DSM
           43827]
          Length = 396

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 141/323 (43%), Gaps = 11/323 (3%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           M S          L     A   +  R    GI     + S+ L+   G N GIDF GG 
Sbjct: 1   MSSTPRKASVFQRLYVGNGAFDIVGKRTRWYGIFGAILVASVLLVIFKGFNLGIDFTGGT 60

Query: 580 QLGVLANR----PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           ++ + A       +    V+ + +     D +     G  +           +  Q   L
Sbjct: 61  RIQMPAQTGEGTSISQEAVQDSFKKSVGEDATSVQTVGTGDAATFQIRSETLTTQQIDGL 120

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           +       +     +  +   V      E+  K ++ ++I  +A+++++ + F+   A+G
Sbjct: 121 KNTLNDDLKPEGGLSSVSDSAVSASWGGEITTKALLALLIFFVAVMLFLALYFELAMAVG 180

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTT 753
           A+  ++ D+  T G ++L G E +   +  +LT++G+S+ D VVV+D++R+N +  L  T
Sbjct: 181 ALVAVVHDVVITAGVYSLVGFEVSPATIIGLLTILGFSLYDTVVVFDKVRENTRGILGLT 240

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVA 808
             ++ +  + ++N+TL RS+ TS+ A + V+ +      + G   +   A+    G+ + 
Sbjct: 241 RRTYGEATNLAVNQTLMRSINTSLIALLPVMGLLVVGVWLLGVGTLKDLALVQLAGMAIG 300

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
           A SSIFIA  I + +     +  
Sbjct: 301 ALSSIFIAPAIAVDLKMRDPRYK 323


>gi|91212697|ref|YP_542683.1| acriflavine resistance protein F [Escherichia coli UTI89]
 gi|117625556|ref|YP_858879.1| acriflavine resistance protein F [Escherichia coli APEC O1]
 gi|218560335|ref|YP_002393248.1| multidrug efflux system protein [Escherichia coli S88]
 gi|227887992|ref|ZP_04005797.1| acriflavine resistance protein F [Escherichia coli 83972]
 gi|237705975|ref|ZP_04536456.1| acriflavine resistance protein F [Escherichia sp. 3_2_53FAA]
 gi|300991064|ref|ZP_07179485.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 45-1]
 gi|331659555|ref|ZP_08360497.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           TA206]
 gi|91074271|gb|ABE09152.1| acriflavine resistance protein F [Escherichia coli UTI89]
 gi|115514680|gb|ABJ02755.1| acriflavine resistance protein F [Escherichia coli APEC O1]
 gi|218367104|emb|CAR04877.1| multidrug efflux system protein [Escherichia coli S88]
 gi|226899015|gb|EEH85274.1| acriflavine resistance protein F [Escherichia sp. 3_2_53FAA]
 gi|227835388|gb|EEJ45854.1| acriflavine resistance protein F [Escherichia coli 83972]
 gi|294492840|gb|ADE91596.1| acriflavine resistance protein F [Escherichia coli IHE3034]
 gi|300406985|gb|EFJ90523.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 45-1]
 gi|307555360|gb|ADN48135.1| acriflavine resistance protein F [Escherichia coli ABU 83972]
 gi|307625134|gb|ADN69438.1| multidrug efflux system protein [Escherichia coli UM146]
 gi|315289027|gb|EFU48425.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 110-3]
 gi|315294817|gb|EFU54160.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 153-1]
 gi|323957586|gb|EGB53300.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H263]
 gi|331054137|gb|EGI26166.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           TA206]
          Length = 1034

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|118602968|ref|YP_904183.1| protein-export membrane protein SecD [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
 gi|118567907|gb|ABL02712.1| protein-export membrane protein SecD [Candidatus Ruthia magnifica
           str. Cm (Calyptogena magnifica)]
          Length = 615

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 174/519 (33%), Positives = 289/519 (55%), Gaps = 36/519 (6%)

Query: 32  LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
           +  + + +    +SLGLDLRGG + +LEVD +  ++  +    +ELR  L+K+ +   S+
Sbjct: 108 VPVWLTILGGKAMSLGLDLRGGVYFLLEVDMETVISALMNKVYNELRVLLRKDRL-YKSI 166

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +Q    I + F  +  K+  A  + L L              L   + E  ++I +S++ 
Sbjct: 167 KQENGSIVIRFKHAELKDKAAQLIKLEL---------GDLVMLDNNSDELSLNIGISESA 217

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
             Q    A++Q++  +R R++++G++E  IQ   S RI++QLPG QD +R +++LGT A 
Sbjct: 218 QRQAKKSALKQNITTLRNRVNELGVTEPIIQ-QSSERIMVQLPGVQDTARAKEILGTVAT 276

Query: 212 MSFHKVLPNN------SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           + F  V   N             G +     DG+  L++D+V  +G ++ GA ++ D + 
Sbjct: 277 LEFRLVDEKNDPQIAIQSGRVPIGSKLYYFKDGSPLLLKDRVITTGENITGAASSIDQEN 336

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL-------------------AVVLDGRVLTAP 306
           + P+V+I+ D +G R     T+  +   +                         R +   
Sbjct: 337 NIPMVNITLDSIGGRAMLNTTKKYLHHRMAVVFIENKVETIIKNGKTIKKHTTTRDIINA 396

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+  S + QI+G  +   A  LA +LRAGSL   + I+EER +G  LG+D+I KG  
Sbjct: 397 ATIQSAFSSRFQITGIDSAREARNLALLLRAGSLSAPIEIIEERTIGPSLGADNITKGMT 456

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           +++ G VL++LFM + Y  +G+VA+ ++  N+++ +++LSLL ATLTLP IAGIVL +G+
Sbjct: 457 SVLVGFVLVLLFMAIRYRIFGIVANVALTFNLVMIVSVLSLLQATLTLPGIAGIVLTVGM 516

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+N+L+ ERI+EE   N  +  ++  G+ +A  TI D+NIT LIA +VLF FG G ++
Sbjct: 517 AVDANVLIFERIKEELCVNSKIQKAISNGYDKALLTIADANITTLIAALVLFSFGTGPIK 576

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GFAIT+ + I+ SMFTAI + RA++  I   KK++ I I
Sbjct: 577 GFAITLSIGIVTSMFTAIIVSRAIINKIYGGKKLEEISI 615



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 103/261 (39%), Gaps = 4/261 (1%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
            LN    +       V     V+  +                N    ++         G 
Sbjct: 353 MLNTTKKYLHHRMAVVFIENKVETIIKNGKTIKKHTTTRDIINAATIQSAFSSRFQITGI 412

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A+      +  +   +     I     +GP +  + I KG+  V++  + +L+++ IR
Sbjct: 413 DSAREARNLALLLRAGSLSAPIEIIEERTIGPSLGADNITKGMTSVLVGFVLVLLFMAIR 472

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  F + A   L  ++   +   +L      L  +A ++  +G +V+  V++++R+++ 
Sbjct: 473 YRI-FGIVANVALTFNLVMIVSVLSLLQATLTLPGIAGIVLTVGMAVDANVLIFERIKEE 531

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           + + +     +  I    ++ L      ++   I+ L +  +G   I  FAI ++ GIV 
Sbjct: 532 LCVNSK---IQKAISNGYDKALLTIADANITTLIAALVLFSFGTGPIKGFAITLSIGIVT 588

Query: 808 AASSSIFIAAPILLFIYDWRA 828
           +  ++I ++  I+  IY  + 
Sbjct: 589 SMFTAIIVSRAIINKIYGGKK 609



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 26/117 (22%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            +     L   +  + +L ALPN                           GS L ++V  
Sbjct: 4   YSRLKNALIIFVLLLSMLYALPNIF-------------------------GSDLAVQVSS 38

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                  +    +++++ LK + I   S+     +I + F D+  +    D +   L
Sbjct: 39  VG-NTLIVDQDLNKIKNVLKAQQIEFKSVELTNQRILVRFKDNTQQLLAKDVLKQAL 94


>gi|191173830|ref|ZP_03035351.1| acriflavine resistance protein F [Escherichia coli F11]
 gi|300979708|ref|ZP_07174658.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 200-1]
 gi|190905880|gb|EDV65498.1| acriflavine resistance protein F [Escherichia coli F11]
 gi|300307926|gb|EFJ62446.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 200-1]
 gi|324015875|gb|EGB85094.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 60-1]
          Length = 1034

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|120601548|ref|YP_965948.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Desulfovibrio
           vulgaris DP4]
 gi|120561777|gb|ABM27521.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio vulgaris DP4]
          Length = 1070

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 59/556 (10%), Positives = 144/556 (25%), Gaps = 41/556 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        + ++P   P             + + +    
Sbjct: 8   RPVFAWVIAIIIMLAGALSIL-----SLPVSQYPKIAP-------------TSVNISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                  V   +    ++    +        +     Q  ITL+F  S   +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQKMKGIDSLRYMSSTSDATGQVSITLTFDASTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +         +++     D       + S       +D I   
Sbjct: 110 KLALATPMLPEAVQRQGITVNKSTSSFLMIIALASDDPSLTGRDLSDYAATYLLDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L     T A +       N        G        
Sbjct: 170 DGVGETQLFGAQ-YAMRVWLDPHKLMNYRMTPADVRSAITAQNTQISVGQIGGTPAVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G  + +  +  +                 +    +   E             +       
Sbjct: 229 GMSFTILSQSLL-------------QTREQFERIVLRVEQDGSTVRLADVARVELGSENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T++        L          +           
Sbjct: 276 DAVSHFNGKPSTGIAIKLATGANALDTVKRVRTTMEGLAKNLPEGIRCVFPYDTTPFVRV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+++ +   +  ++   ++ + ++ T   L+  G ++ + ++
Sbjct: 336 SIEEVVKTLAEAIVLVFLVMYLFLQNIRATIIPTIAVPVVLLGTFGALAAFGFSINMLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +           +    +      + 
Sbjct: 396 FGVVLAIGLLVDDAIVVVENVERIMSEEGLPPREATRKSMGEITGALVGIALVLSAVFIP 455

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G +    R F++T+  ++ +S+  A+ +  A+    ++               + 
Sbjct: 456 MAFIKGSSGVIYRQFSLTIVSAMTLSVVVALVLTPALCATFLKPLHKHEHQAQGGFFGWF 515

Query: 534 IPDCIAIQFMRARFWG 549
                       +   
Sbjct: 516 NRMFDRTSRGYRKQVT 531



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/422 (10%), Positives = 121/422 (28%), Gaps = 11/422 (2%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L  + +T        I L    + D +I   +   +       +  ++         +  
Sbjct: 75  LRYMSSTSDATGQVSITLTFDASTDPDIAQVQVQNKLALATPMLPEAVQRQGITVNKSTS 134

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              +   +A+      G   +  +A T  L  +      +   +           +    
Sbjct: 135 SFLMIIALASDDPSLTG-RDLSDYAATYLLDPISR-VDGVGETQLFGAQYAMRVWLDPHK 192

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +                       G                    +     +   ++ + 
Sbjct: 193 LMNYRMTPADVRSAITAQNTQISVGQIGGTPAVPGQGMSFTILSQSLLQTREQFERIVLR 252

Query: 585 ANRP---VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +    V L+ V       +  D            +        +++   + +    + 
Sbjct: 253 VEQDGSTVRLADVARVELGSENYDAVSHFNGKPSTGIAIKLATGANALDTVKRVRTTMEG 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           + + +P               R  I + +  +  + + + + +++  +     +     +
Sbjct: 313 LAKNLPEGIRCVFPYDTTPFVRVSIEEVVKTLAEAIVLVFLVMYLFLQNIRATIIPTIAV 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G  A FG   N+  +  V+  IG  V+D +VV + +     +    +  R+ 
Sbjct: 373 PVVLLGTFGALAAFGFSINMLTMFGVVLAIGLLVDDAIVVVENV--ERIMSEEGLPPREA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             KS+ E  G  V  ++      +PMA      G +   F++ +   + ++   ++ +  
Sbjct: 431 TRKSMGEITGALVGIALVLSAVFIPMAFIKGSSGVIYRQFSLTIVSAMTLSVVVALVLTP 490

Query: 818 PI 819
            +
Sbjct: 491 AL 492



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 69/202 (34%), Gaps = 10/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKWYFAL 694
            E ++        L         G      +       +  IS + + + +   ++ +   
Sbjct: 837  EAMQAVEDMAAKLPPGVGISWTGLSYQERMSGSQAPALYAISILVVFLCLAALYESWSVP 896

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVA--AVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             A+  L++ +       A  G   N        +LT IG +  + +++ +     M L  
Sbjct: 897  TAVI-LVVPLGIIGALMATLGRGLNNDVFFQVGLLTTIGLAAKNAILIVEFA---MHLVK 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
            +     D   ++    L   + TS+A  + VLPMA+    G     +    +  G+  A 
Sbjct: 953  SGRPLLDATAEAARLRLRPILMTSLAFLLGVLPMAISTGAGSGSQRAIGTGVMGGMFSAT 1012

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
              +++      + +Y +  +  
Sbjct: 1013 VLAVYFVPVFFVMVYRFAMRKR 1034


>gi|308233818|ref|ZP_07664555.1| protein-export membrane protein SecF [Atopobium vaginae DSM 15829]
 gi|328944554|ref|ZP_08242015.1| protein-export membrane protein SecF [Atopobium vaginae DSM 15829]
 gi|327490955|gb|EGF22733.1| protein-export membrane protein SecF [Atopobium vaginae DSM 15829]
          Length = 324

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 71/304 (23%), Positives = 134/304 (44%), Gaps = 5/304 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                   I F+  R   + IS +  + ++  L   GL +GI+F+GG  +       + +
Sbjct: 1   MRSHFRKEISFIPHRRVFLSISSVLVVLAVVGLVLKGLVFGIEFQGGTTIDFHDTGSITI 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + +R  L      D   Q    +      ++    +            K +         
Sbjct: 61  AAMRDALLQAGENDPVVQTSVSDAAQGFLVRSDTTNPEVANAHAAAAAKSLGLADDSY-- 118

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +GP   +++ R       I+ + +++Y+ IR+++  ++ A+  LI D+  TLG +
Sbjct: 119 -TVTTIGPDWGQDITRASAFAFCIAIVLIIVYVSIRYEFKMSITAVIALIHDLVITLGIY 177

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINETL 769
           A          VAA+LT++GYS+ D VV ++RM +N K        ++ ++ + SINE  
Sbjct: 178 AWTQTPITPNVVAALLTIMGYSLYDTVVEFNRMDENAKHLHDGIHHTYYEICNFSINEVF 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T++ + + V  M V GG  +  FA+ M  G ++   SS  +A+P+L        +
Sbjct: 238 VRTINTTITSVVPVAIMLVLGGQTLKDFALAMLIGEILGTWSSFGVASPLLAIWKTREKR 297

Query: 830 NARI 833
            ARI
Sbjct: 298 WARI 301


>gi|54295024|ref|YP_127439.1| hypothetical protein lpl2104 [Legionella pneumophila str. Lens]
 gi|53754856|emb|CAH16344.1| hypothetical protein lpl2104 [Legionella pneumophila str. Lens]
          Length = 1052

 Score =  195 bits (495), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 70/582 (12%), Positives = 169/582 (29%), Gaps = 40/582 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P  +P               + ++   
Sbjct: 10  RPVFATVISIIIVMVGVLS-----YFNLPIEQYPQVVPPT-------------IQVQASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   E +     +   +   ++T++F      +     V  
Sbjct: 52  PGANAKTVAETVATPIEQEVNGVENMLYMDSQSTDDGQMRLTITFKLGTDLDQAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  KL  + ++  + T       +++                   I    D+I   
Sbjct: 112 RVAVVEPKLPEEVRRLGITTNKNSPDLMLVVNLYSPNGQYDQTYIGNYAILHIRDKIRRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     L        +    +P  +     T   +       N         ++  ++  
Sbjct: 172 EGVGNVLVFGASEYAMRLWLNPDLMNTFNLTANDVLAAVRAQNVQVASGKLNLQPQKNQY 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G +Y +E K  +              K  +    I     G R         +       
Sbjct: 232 GFEYHIETKGRL-------------VKKEEFENIIVKSGEGGRIVRLKDIGRVELGTQNY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T +        +     P     +          
Sbjct: 279 LTKGYLDKYPAVALPIYQRPGTNALATAQEIIKTMKTIAKDFPPGITYDIAYNPTLFVQQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +   +   +I +++I T A++  +G +L   ++
Sbjct: 339 SIDAVFHTIYEAIALVVLVILIFLQTWRASAIPVVAIPVSLIGTFAVMQAIGFSLNYLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +    +   +   +     +   S +    +  +   +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERNIQAGMNPRDAARKTMTEVGSALVAMGLVLIAVFLPT 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + F  T+ ++  IS+F ++++   M + +      ++I    L+ +   
Sbjct: 459 VFLEGISGRFYQQFGTTLAVATAISVFVSLTLTPTMAVLL-LRAHHETIKQEGLAWWRKP 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                  F R                        + YGI   
Sbjct: 518 IYGFLHGFNRLMEGFSRQYGKLVATLTRKTALMTIAYGIFIS 559



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 46/446 (10%), Positives = 129/446 (28%), Gaps = 19/446 (4%)

Query: 402  LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
            +  +  +  T++    +G          +        +E  R   +    +     +  S
Sbjct: 607  ILAIPGIAHTVSFTGFSGATFTNSSNAGAIFTPLLSFQERQRMGINYND-ILKRLRQELS 665

Query: 462  TIFDSNITAL-------IATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMM 511
            TI ++ I  +       I     F        G  + + +    +M  A +      ++ 
Sbjct: 666  TIKEALIVVIPPPPVRGIGNAGGFKMMLQDRGGRGLDVLMEAAATMVNAANQEKATTSVF 725

Query: 512  IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
             F         + ++      L      +      + G      F+            + 
Sbjct: 726  TFFENSTPRLHLKLDREKVERLNVPYANVVEALEVYLGSVFINEFNYLGRTFRVIAQADS 785

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                     L +         V   ++  ++      +         + LQ       + 
Sbjct: 786  EYRHTEDDILRIKVKSNNGDMVPIGSVAQIENTVAPSRMPRFNLYPAIDLQGDVAPGYSS 845

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
               L  ++K     +P         +     + +    ++   +  I + + +  +++ W
Sbjct: 846  DEALVTMEKLAQNNLPDGIGYEWTEI-AYQQKMVGNTALMAFTLGVIFIFLVLAAQYESW 904

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + + +  ++    + G+E N+      L LIG +  + +++ +  R   +L
Sbjct: 905  SLPLAVILIVPMCLFSSMLGVKILGMENNIMTQIGFLVLIGLASKNAILIVEFAR---QL 961

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                 +      ++    L   + TS A  + V P+ +    G  +  +  + +  G++ 
Sbjct: 962  ENRGYNLWKAAIQAAKLRLRPILMTSFAFILGVFPLIISTGAGAEMRRALGVAVFSGMLG 1021

Query: 808  AASSSIFIAAPILLFIYDWRAKNARI 833
                 +       + I        ++
Sbjct: 1022 VTFFGLIFTPLFYVLISRLSRYKRKL 1047



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 69/203 (33%), Gaps = 9/203 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +    + ++ + K     +      N  +   +    +       + +  + +LI++ 
Sbjct: 304 ATAQEIIKTMKTIAKDFPPGITYDIAYNPTLFVQQSIDAVFHTIYEAIALVVLVILIFLQ 363

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  +   +  + + +  T       G   N   +  ++  IG  V+D +VV + M 
Sbjct: 364 ---TWRASAIPVVAIPVSLIGTFAVMQAIGFSLNYLTLFGLVLAIGIVVDDAIVVVENME 420

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
           +N++     ++ RD   K++ E     V   +      LP     G        F   +A
Sbjct: 421 RNIQA---GMNPRDAARKTMTEVGSALVAMGLVLIAVFLPTVFLEGISGRFYQQFGTTLA 477

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
               ++   S+ +   + + +  
Sbjct: 478 VATAISVFVSLTLTPTMAVLLLR 500


>gi|242279109|ref|YP_002991238.1| protein-export membrane protein SecF [Desulfovibrio salexigens DSM
           2638]
 gi|242122003|gb|ACS79699.1| protein-export membrane protein SecF [Desulfovibrio salexigens DSM
           2638]
          Length = 357

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 102/341 (29%), Positives = 160/341 (46%), Gaps = 49/341 (14%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVD 590
            +I     I F+  +     IS +  +  I  L  +G   YGIDF GGI + V  ++ V+
Sbjct: 4   QIIKPDTKIDFIGFKAKAFIISAVLILLGIGSLIMNGGPKYGIDFAGGIVVQVKFDKKVE 63

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLS 649
           +  V+  L+  ++  +  Q+F  + +  + L+    D  +     ++     +       
Sbjct: 64  VKAVKGALKEAKLPGLVVQSFGHDDDNEILLRTSSSDISSSEVRDKISSGLESGMGGTGF 123

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-------------------- 689
            IQ  E+VGPK+  +L  K I  +  + + + IYI  RF+                    
Sbjct: 124 EIQRLEMVGPKVGADLRTKAIEALYFAVLLIAIYISGRFEQRWFAAAIMAGGLFGGITLL 183

Query: 690 --------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
                                       +ALGAI  LI DI  T+G F+L G EF+LT +
Sbjct: 184 QMLGMSTTVLIFGALFITIGLCWYLKLNYALGAIVALIHDIMITVGIFSLLGKEFDLTII 243

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA+LT+IGYS+ND ++V+DR+R+N+ L   S    D I+ SIN+TL R++ TS    + V
Sbjct: 244 AALLTIIGYSLNDTIIVFDRIRENL-LGKVSDCLADTINISINQTLSRTILTSGTTLLVV 302

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +   GG VI  FA+ +  G+ V   SSIF+A+PILL   
Sbjct: 303 AALFALGGGVIHDFALALLIGVGVGTYSSIFVASPILLGFG 343


>gi|330819604|ref|YP_004348466.1| hydrophobe/amphiphile efflux-1 family protein [Burkholderia
           gladioli BSR3]
 gi|327371599|gb|AEA62954.1| hydrophobe/amphiphile efflux-1 family protein [Burkholderia
           gladioli BSR3]
          Length = 1061

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/574 (12%), Positives = 160/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIVLMLVGIASIF-----TLPISQYPTIAPPA-------------VQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       IT+SFA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITISFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      ++    N +       + +  +    +D I   
Sbjct: 110 KLSLATPILPQVVQQLGLKVTKSSSSYLLWIAFNSEDGSMGRNDLTNYVASHVLDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q L        +    DP++L     T A +S      N    G   G    +   
Sbjct: 170 NGVGQTLLLGSQ-YAMRIWLDPNKLNNFSLTPADVSNAISAQNVQIAGGQIGGTPAKAGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + ++  +                 +    +        +        IG      
Sbjct: 229 VLQATITEQTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYMGQPTAGLGIQLATGANALATADAIKAKVKELSKYFPHGMVVHYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++ L G T+   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMGLAGFTINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +  S +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMVEEGLPPKEATKKAMGQITSALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I+         
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIEKGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F + R             S   L  +
Sbjct: 511 FFGWFNRNFDKGREKYHVGVHHVIKRSGRWLVIY 544



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A    ++   K++++  
Sbjct: 258 SQVRLKDVAQIGLGAENYNFDTKYMGQPTAGLGIQLATGANALATADAIKAKVKELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   + +         R  I + +  ++   + + + +++  +     L     + + + 
Sbjct: 318 PHGMVVHYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N  ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAIMGLAGFTINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMVEEGLPPKEATKKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITSALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 76/216 (35%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q   G+S  Q                  +         +   +    
Sbjct: 816  ERYNGISAVEIQGQASTGNSTGQAMAAMQRLAAQLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLASTLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+        +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQVGEKMGPVEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFV 1026



 Score = 45.5 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 59/529 (11%), Positives = 141/529 (26%), Gaps = 58/529 (10%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WLVI  ++I  +G L        +      P              +G   ++++  
Sbjct: 536  RSGRWLVIYLAVIVGVGFLFV------RLPKSFLPDED-----------QGYMFMIVQ-T 577

Query: 62   EDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQIQ----------NKITLSFADSRFKE 109
                          ++  ++  +++ +                     + +       + 
Sbjct: 578  PSGSTQETTARTLADITDYMAKEEKNVVDSVFTVNGFSFAGRGQNAGLVFVKLRPFEERR 637

Query: 110  NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
                KV   ++          K  +++      I  + +    D  ++       + +  
Sbjct: 638  AADRKVQALIKRTFGHY-AGYKDGIVIPFNPPSIPELGTAAGFDFELTDNGGLGHDALMA 696

Query: 170  RIDQI---GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
              +Q+      + T+  +  + +      + D  R +        ++   +    S    
Sbjct: 697  ARNQLLGMAAKDPTLALVRPNGLNDTPQYKVDIDREKANALG---VTAAAIDQTFSIAWA 753

Query: 227  MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
               V    D+DG    V  + +               +     + I +    A      +
Sbjct: 754  SQYVNNFLDTDGRIKKVYVQAD------------SPFRVTPEDLGIWYVRNNAGGMVPFS 801

Query: 287  RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                G                  +     + Q S   +   A      L A         
Sbjct: 802  AFATGHWTYGSPKLERYNGISAVEI----QGQASTGNSTGQAMAAMQRLAAQLPTGIGYS 857

Query: 347  VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
                +        S      AI   +V + L  +             + L VI  L   +
Sbjct: 858  WTGLSFQEIQSG-SQAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAST 916

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFD 465
            L G    +    G++  +GL+  + IL+ E  RE +  +      +           I  
Sbjct: 917  LRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQVGEKMGPVEAALEAARLRLRPILM 976

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +++  ++  + L      G  +       +   +L + F AI ++    
Sbjct: 977  TSLAFILGVLPLAISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFF 1025


>gi|86740080|ref|YP_480480.1| preprotein translocase subunit SecF [Frankia sp. CcI3]
 gi|86566942|gb|ABD10751.1| protein translocase subunit secF [Frankia sp. CcI3]
          Length = 398

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 73/295 (24%), Positives = 131/295 (44%), Gaps = 9/295 (3%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + F+  R     +S +     I  +   G  +GI+F GG    + +     ++ V   
Sbjct: 12  FNVDFVGRRKAWYAVSGVVVAVCIISMIFRGFTFGIEFSGGAVFQLPSGGGT-VAQVEDT 70

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L  + +          E +   R+Q           +   + K+ +   P         V
Sbjct: 71  LSGIGLDPADSVVQQLETSHQFRIQTPTLSDAQTRELTGALAKRFSVSNPD-RDIAVSTV 129

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G      +  K + G+ +  + ++IY+ +RF+W  AL A+  L+ D+  T+G ++L G E
Sbjct: 130 GSSWGSTITNKALQGLAVFLVLVVIYLSVRFEWRMALAAMAALVHDLVVTMGVYSLVGFE 189

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYT 775
              + V AVLT++G+S+ D VVV+DR+R+N       T  ++ +  + ++NETL RS+ T
Sbjct: 190 VTPSTVIAVLTILGFSLYDTVVVFDRVRENTAGMGTSTRRTYAEATNDALNETLVRSLNT 249

Query: 776 SMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           S+ A I V  +        G   +   A+    GI     SS+F A P+L+ +  
Sbjct: 250 SLIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSLFFATPLLVDLKR 304


>gi|220910339|ref|YP_002485650.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Cyanothece sp. PCC 7425]
 gi|219866950|gb|ACL47289.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 7425]
          Length = 1043

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 77/614 (12%), Positives = 168/614 (27%), Gaps = 38/614 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   +I  +GL+      LP   ++ +P   P            G        
Sbjct: 8   RRPVFATVCSLLIILVGLVS-----LPTLAIEYYPDVSPPTI---------GVTANYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    ++  + ++       +      + IT++F     K   A  V   + 
Sbjct: 54  SAETVETNVTTILEQQINGVEGMKYISSTSDSNGGSNITVTFDQGYDKNVAAVDVQNRIA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L     +  +  +      + +               S       +D +      
Sbjct: 114 VVQSQLPQQVIQTGVSVSKASTQIVNVFGLYSPDDRYDPAFISNYASLYIVDPLKRIPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP+RL     T   +S      N      + G          Q
Sbjct: 174 GSVQIFGERTYAMRLWLDPNRLASRGLTAMDVSDALREQNIQVGAGVIGAPPAPRGQEFQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++    ++                +    +                            
Sbjct: 234 IGIQAISRLA-------------TAEEFGDIVIQTGADGSLVRVRDVGRTELGAQDYSSN 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +          L   L+    P     +      A   +  
Sbjct: 281 TRFNGKNAVGLGIYQLTGANALDVASRTEALMEELKQKFPPGLDYELAFDTTEAVREAVW 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T A    LV++V+F+ +   +  L+   +I ++++ T A +   G ++   ++ G+
Sbjct: 341 EVANTLAESVFLVVVVIFVFLQGWRTTLIPAMTIPVSLLGTFAFIKAFGFSINSLTLFGL 400

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLF 478
           VL  GL VD  I+V E I      +  S   +            I  S +   +   V+F
Sbjct: 401 VLATGLVVDDAIVVIENITRLMEERGLSPREAAFESMREVTGAVIATSLVLMAVFIPVVF 460

Query: 479 FFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSR 530
           F G      + FA+T+  S+ +S F A+++  A+   ++           + ++      
Sbjct: 461 FPGVTGRLYQQFALTIVFSVALSTFNALTLTPALCALLLGRPQATQNWFFRRVNWGINKT 520

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  +           +   +L  +     +   G     + +G     + A + V 
Sbjct: 521 RRGYERSLIWITRFKGAVLIAFFLLIGVTYWLFITVPGGFVPEEDQGYFVTIIQAPQGVS 580

Query: 591 LSVVRSNLESLQIG 604
           L      +  +   
Sbjct: 581 LEYTDKIVSQVDQE 594



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 5/140 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L    T+ + +  T  F   FG   N   +  ++   G  V+D +VV + +     
Sbjct: 364 WRTTLIPAMTIPVSLLGTFAFIKAFGFSINSLTLFGLVLATGLVVDDAIVVIENI--TRL 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
           +    +S R+   +S+ E  G  + TS+      +P+  + G        FA+ + F + 
Sbjct: 422 MEERGLSPREAAFESMREVTGAVIATSLVLMAVFIPVVFFPGVTGRLYQQFALTIVFSVA 481

Query: 807 VAASSSIFIAAPILLFIYDW 826
           ++  +++ +   +   +   
Sbjct: 482 LSTFNALTLTPALCALLLGR 501



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 78/246 (31%), Gaps = 9/246 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                    L +L     +          L R     G+        +++++         
Sbjct: 783  SEDDRMIPLSNLIKITQTVAPQSITHYNLFRSANITGNGSPGMSSGQVIQQMENLARQTL 842

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                          EL   G   +I     + +++ +      +   L  I ++ L I  
Sbjct: 843  PQGIGYTWTGLSLEELKSGGQAPLIFGLGLVFVFLVLAAQYESYIDPLIIILSVPLAILG 902

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L    L G+  ++     ++ LIG +  + +++ +      +     +S       +  
Sbjct: 903  ALAAQGLRGLNNDVFCQIGLVMLIGLASKNAILIVEFAN---QKKAEGLSNTKAAIAASE 959

Query: 767  ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            E L   + T+++     LP+      G +   S    +  G++ +   S+FI     + I
Sbjct: 960  ERLRPILMTALSFIFGTLPLVFATGSGAAARQSLGTAVYGGMISSTFLSLFIVPVFFIVI 1019

Query: 824  YDWRAK 829
             + R +
Sbjct: 1020 NNIRDR 1025


>gi|606207|gb|AAA58070.1| alternate name envD, has different start annotated [Escherichia
           coli str. K-12 substr. MG1655]
          Length = 1034

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +                    +                      +      
Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V ++  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291

Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T + ++    ++    P               +  I + +  +  + + +
Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +  ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQXPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|73667497|ref|YP_303513.1| preprotein translocase subunit SecD [Ehrlichia canis str. Jake]
 gi|72394638|gb|AAZ68915.1| SecD/SecF/SecDF export membrane protein [Ehrlichia canis str. Jake]
          Length = 508

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 175/518 (33%), Positives = 297/518 (57%), Gaps = 23/518 (4%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             I+ S++C + + + LPNF+    L      + K +++LGLDL+GG +L+LE D  +++
Sbjct: 11  KPIIVSLLCILAIYLILPNFIDSKFL------LSKQKVNLGLDLQGGVYLLLEADFKEYL 64

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    DEL  FL  + I        Q+K+ L+  D +  + +       ++      
Sbjct: 65  KERMYALYDELNEFLLSKKIEYSRFDVEQDKLVLTLKDGKSFDKVKLFGNKNVR------ 118

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                    ++  E  + I    +   +++ + I  ++  IR+R+D+ G  E  I   G 
Sbjct: 119 ---------ISEREGCVEISFYDSYKSELLRNVISDAISNIRRRLDKSGTKEIIINSHGK 169

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYLVED 245
            RI +Q+PG  D S+++ LLG TAK++FH +                L+D+ GN Y +  
Sbjct: 170 DRISLQVPGVHDTSQIKTLLGKTAKLTFHLLEDVKQLSSINSLTTVLLKDNRGNTYPILK 229

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
           KVEISG  L    ++        +V    +   A++F ++T++N  KP A+VLDG VLTA
Sbjct: 230 KVEISGDSLID-VSSGINSLGNVIVHFKLNNEAAKKFAKITKENFNKPFAIVLDGVVLTA 288

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           P+I + I +G  +ISGNFT+ETA  L+ +L++G+LP+ L ++EE+ +G+ LG++ I +G 
Sbjct: 289 PIIREPILTGSGEISGNFTVETAKELSILLKSGALPVPLKVIEEKTIGSSLGAEYIKQGR 348

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A++  ++ + +F+I  Y  +G++A   +  N+I  +A+L+LL ATLTLP +AGI L +G
Sbjct: 349 LAMIISVIAVSVFIIFSYRMFGVLAVVGLVFNIIFIVAVLTLLQATLTLPGLAGITLTVG 408

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           ++VD+N+L+ ERIREE    + +  +++ GF  A STIFDSNIT LI   V+F  G G +
Sbjct: 409 MSVDANVLIFERIREELNSTKKLRWAVESGFKNAMSTIFDSNITTLIVAAVMFVIGSGPI 468

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            GFAIT+ + IL SMF+AI++ + ++   I+   +K++
Sbjct: 469 SGFAITLSIGILCSMFSAITLTKMLIDLYIKLFNLKTL 506



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 79/171 (46%), Gaps = 5/171 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  E I++G + +IIS IA+ ++I   ++  F + A+  L+ +I   +    L  
Sbjct: 334 TIGSSLGAEYIKQGRLAMIISVIAVSVFIIFSYRM-FGVLAVVGLVFNIIFIVAVLTLLQ 392

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A +   +G SV+  V++++R+R+ +         R  ++      +     +
Sbjct: 393 ATLTLPGLAGITLTVGMSVDANVLIFERIREELNSTKK---LRWAVESGFKNAMSTIFDS 449

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++   I    M V G   I  FAI ++ GI+ +  S+I     +L+ +Y  
Sbjct: 450 NITTLIVAAVMFVIGSGPISGFAITLSIGILCSMFSAI-TLTKMLIDLYIK 499


>gi|197337448|ref|YP_002158791.1| OqxB [Vibrio fischeri MJ11]
 gi|197314700|gb|ACH64149.1| OqxB [Vibrio fischeri MJ11]
          Length = 1050

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/694 (11%), Positives = 188/694 (27%), Gaps = 48/694 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAIALAV-----LPVAEYPKISPP-------------SVSVSAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  +     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYVNLNIKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP ++  L  TT+ +       N        G      +
Sbjct: 170 VTGISEVGVLGGGEYAMRVWLDPDKMTNLGLTTSDVHAALAEQNVQVAAGKIGAAPYASA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +  +              +    +          +      +      
Sbjct: 230 QDVQFNLVTKGRLESVE-------------EFENVVLRANNDGSSVYLKDIARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    +   L A                   
Sbjct: 277 YDGNGQFRGKDASIVTLSLQSDANALESGKAVMEMLEKLSATFPEGLAYETSYDTTLFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++ + G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMLMTGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +    +++   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTIMKRDPSLSPRKATLIAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           I   +L    G   R FA+T+ ++++IS   A+++  A+   +         +  K+ + 
Sbjct: 457 IPVAMLPGITGIMYRQFALTICIAVIISSINALTLSPALCSLVLKQGGDNTARWFKAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                     +       +         I     +     T       + KG + + V  
Sbjct: 517 GLDKVTDKYGEIAGFFVRKTMILMTFFVIALGAVTFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        +       Q  DG              +     +   +K      
Sbjct: 577 PDSASLSRTEEVSAKVLEIIEQEQGVDGVTVANGYAFLTGAAASNGASLFVKLKPWGERN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                  +  I      R  +      VI +  A
Sbjct: 637 DMDGDNSSFAITNRINGRAAME-LPEAVIFAMGA 669



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 88/235 (37%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +       +  D + Q    + + +        +++   + +  + +K++   P 
Sbjct: 262 VYLKDIARVELGKKFYDGNGQFRGKDASIVTLSLQSDANALESGKAVMEMLEKLSATFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GLAYETSYDTTLFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N   +  ++  IG  V+D ++V + +   +     S+S R     ++ E
Sbjct: 382 FAVMLMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTIMKRDPSLSPRKATLIAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      +P+A+  G        FA+ +   +++++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAVIISSINALTLSPAL 495



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 64/197 (32%), Gaps = 6/197 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
               +++   V     Q           +   + I    ++ I + +++  +++ W   L 
Sbjct: 842  AAMERVAAEVLPHGYQYEWTGMAYQEVKAGNQAIYAFALALIFIYLFMVAQYESWSIPLA 901

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             I  + +    +     L G+  NL A   ++ LI  +  + +++ +  +   +     +
Sbjct: 902  IILVVPVATFGSFLALNLTGMPLNLYAQIGLVLLIALAAKNAILIVEFAKNEREE--KEV 959

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--SFAIPMAFGIVVAASSS 812
               D               TS +  + +LP+    G   I   S  + +  G++      
Sbjct: 960  GLDDASVNGGRLRFRAVNMTSWSFILGILPLVFASGAGYISQNSLGVSLIGGLLCVLLVG 1019

Query: 813  IFIAAPILLFIYDWRAK 829
              +       +   R K
Sbjct: 1020 TLLIPGFYAMVQRRREK 1036


>gi|16131154|ref|NP_417732.1| multidrug efflux system protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89110026|ref|AP_003806.1| multidrug efflux system protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|170082794|ref|YP_001732114.1| multidrug efflux system protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238902365|ref|YP_002928161.1| multidrug efflux system protein [Escherichia coli BW2952]
 gi|256024160|ref|ZP_05438025.1| multidrug efflux system protein [Escherichia sp. 4_1_40B]
 gi|300946946|ref|ZP_07161177.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 116-1]
 gi|300958252|ref|ZP_07170399.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 175-1]
 gi|301028297|ref|ZP_07191557.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 196-1]
 gi|399429|sp|P24181|ACRF_ECOLI RecName: Full=Acriflavine resistance protein F; AltName:
           Full=Protein EnvD
 gi|290409|gb|AAA02932.1| acriflavine resistance protein [Escherichia coli]
 gi|510830|emb|CAA41017.1| envD [Escherichia coli K-12]
 gi|1789666|gb|AAC76298.1| multidrug efflux system protein [Escherichia coli str. K-12 substr.
           MG1655]
 gi|85676057|dbj|BAE77307.1| multidrug efflux system protein [Escherichia coli str. K12 substr.
           W3110]
 gi|169890629|gb|ACB04336.1| multidrug efflux system protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238861815|gb|ACR63813.1| multidrug efflux system protein [Escherichia coli BW2952]
 gi|260447707|gb|ACX38129.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli DH1]
 gi|299878640|gb|EFI86851.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 196-1]
 gi|300315070|gb|EFJ64854.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 175-1]
 gi|300453406|gb|EFK17026.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 116-1]
 gi|315137849|dbj|BAJ45008.1| multidrug efflux system protein [Escherichia coli DH1]
          Length = 1034

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +                    +                      +      
Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V ++  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291

Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T + ++    ++    P               +  I + +  +  + + +
Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +  ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|311748772|ref|ZP_07722557.1| AcrB/AcrD/AcrF family protein [Algoriphagus sp. PR1]
 gi|311302847|gb|EAZ81556.2| AcrB/AcrD/AcrF family protein [Algoriphagus sp. PR1]
          Length = 1020

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/665 (11%), Positives = 186/665 (27%), Gaps = 44/665 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   G +      +    +  FPS  P   I+                 
Sbjct: 11  RPVLAIVMSLVIILFGAI-----GISLLGIREFPSVDPP-VIN--------VRTTYVGAN 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +E  + ++       +     + IT+ F      E  A+ V   + G 
Sbjct: 57  ADVIEAQITEPLEEAINGIQGIKSLTSTSNDGGSSITVEFDVGADLEAAANDVRDKVSGA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D +  ++         IV      D+     +E S        +++       +
Sbjct: 117 QRNLPPDAEPPVVSKADADSQPIVFLNVKSDE--RTLLELSDIAENIFKERLQTIPGVSR 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++     T   +       N            +  S   +  
Sbjct: 175 VQIWGEKEYAIRLRMDPLKMASYGVTPLDVLSKVQSENVELPSGRIEGEAIELSVRTKSR 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                       +    +   E            +             
Sbjct: 235 LSTP--------------------QEFNSLIIKEDQNNIVRFQDVGHAELAALNERTVLK 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +       +    ++        ++          +   +      S    
Sbjct: 275 RDGVPMVGVVLVPLPGSNNIEIVDEFYRRLEFIKKDLPEDVGLEIGFDSTEYIRSSIQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      LV+ ++F+ +   +   +   +I +++I    ++ ++  ++ + ++ GIVL
Sbjct: 335 QETILTAFILVVAIIFLFLRDWRTTFIPVLTIPISLIGVFFIMYVMDFSINVLTLLGIVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
            IGL VD  I+V E I     K +    + + G    +  +  + +      + + F   
Sbjct: 395 SIGLVVDDAIVVLENIYTRIEKGEKPLAAAEKGAEEIFFAVIATTVALAAVFLPVIFLTG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI----P 535
             G   R F I +  +++IS F A+++   +   +++ ++  +   N     F+      
Sbjct: 455 TTGRLFREFGIVVAGAVIISSFVALTMTPMLSSRLLKRREKHNRFYNATEPIFVWLNDGY 514

Query: 536 DCIAIQFMRARFWGVGISILF-SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
           D +   FM+ R+    +                     ++ +G I++ +        S +
Sbjct: 515 DRMLGGFMKFRWVSFVLIAFMGIGIYWLFNQIPSELAPVEDRGEIRIQLSGPEGATFSYM 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              ++ +     +    D     +       G S   +  +  +                
Sbjct: 575 DRVIDQMVADFKAEFPPDEVTGLISVTSPGFGSSSTNSGFIRFILTDSENRERSQNDYFN 634

Query: 655 EIVGP 659
           EI   
Sbjct: 635 EINEM 639



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 74/201 (36%), Gaps = 9/201 (4%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           LE +KK + E V L    ++        +E+    +   I+    + +++     W    
Sbjct: 304 LEFIKKDLPEDVGLEIGFDSTEYIRSSIQEVQETILTAFILVVAIIFLFL---RDWRTTF 360

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             + T+ + +        +     N+  +  ++  IG  V+D +VV + +          
Sbjct: 361 IPVLTIPISLIGVFFIMYVMDFSINVLTLLGIVLSIGLVVDDAIVVLENI---YTRIEKG 417

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASS 811
                  +K   E     + T++A     LP+    G+       F I +A  +++++  
Sbjct: 418 EKPLAAAEKGAEEIFFAVIATTVALAAVFLPVIFLTGTTGRLFREFGIVVAGAVIISSFV 477

Query: 812 SIFIAAPILLFIYDWRAKNAR 832
           ++ +   +   +   R K+ R
Sbjct: 478 ALTMTPMLSSRLLKRREKHNR 498



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 67/171 (39%), Gaps = 7/171 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               +   + + + + + +  +F+ +   L  + T+ L I   L      G   N+ +   
Sbjct: 853  NSLLFAFLFALVLIYLVLSAQFESFLDPLTIMFTVPLAIFGALFTLWSLGFTLNIFSQIG 912

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG    + +++ +      +   + +S  + I  +        + TS++  + +LP
Sbjct: 913  IIMLIGLVTKNGILIVEFAN---QRKASGMSIHEAIYGAAVARFRPILMTSLSTILGILP 969

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +A+    G          +  G+  A   ++F+   I  ++     + ARI
Sbjct: 970  IALGLGAGAESRVPMGAAVIGGLTFATILTLFVIPAIYTYLTSKEGRLARI 1020


>gi|237805415|ref|ZP_04592119.1| multidrug/solvent transporter [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331026522|gb|EGI06577.1| multidrug/solvent transporter [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 660

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/571 (11%), Positives = 153/571 (26%), Gaps = 30/571 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           +    ++++PS  P            G  +         V   +    ++  + +     
Sbjct: 2   ISSLPINQYPSIAPPAI---------GIQVTYPGASAQTVQDTVVQVIEQQLNGIDNLRY 52

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
                    +  IT +F      +    +V   L      L  + ++  +  T   +  +
Sbjct: 53  VSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNLATPLLPQEVQQQGIRVTKAVKNFL 112

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++     +       + +  I+    D I  +               +    DP++L   
Sbjct: 113 MVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVGDFQVFGSQ-YAMRIWLDPAKLNNF 171

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T   +       N        G             +  K  +                
Sbjct: 172 QLTPVDVKSAITAQNVQVSSGQLGGLPAISGQQLNATIIGKTRL-------------QTA 218

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +             +        +G                 +          +   T 
Sbjct: 219 EQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTA 278

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +      + L     P    +           S +    T      LV +V+++ +   +
Sbjct: 279 KAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFR 338

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             ++   ++ + ++ T  +L+  G T+   ++ G+VL IGL VD  I+V E +       
Sbjct: 339 ATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENVERNIELG 398

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFT 502
                +     +     I  + +      V   F     G   + FA+T+ +S +IS F 
Sbjct: 399 LEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFN 458

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD---CIAIQFMRARFWGVGISILFSIC 559
           ++++  A+   +++         +      L           F +A    VG        
Sbjct: 459 SLTLSPALAAVLLKGHDAPKDRFSRFLDKMLGGWLFRPFNRFFEKASHGYVGTVARVIRS 518

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
           S   L  +     + + G            D
Sbjct: 519 SGIALLVYAGLMVLTWVGFASTPTGFVPSQD 549



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 89/243 (36%), Gaps = 7/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 233 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 292

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 293 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATIITTMTVPVVLL 352

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + + +N++L    +       K++
Sbjct: 353 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENVERNIEL---GLEPVAATHKAM 409

Query: 766 NETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  + T++      +    + G  G     FA+ +A   V++A +S+ ++  +   
Sbjct: 410 AEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAV 469

Query: 823 IYD 825
           +  
Sbjct: 470 LLK 472


>gi|148359715|ref|YP_001250922.1| putative multidrug-efflux system transmembrane protein [Legionella
           pneumophila str. Corby]
 gi|296107758|ref|YP_003619459.1| probable multidrug-efflux system transmembrane protein [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148281488|gb|ABQ55576.1| probable multidrug-efflux system transmembrane protein [Legionella
           pneumophila str. Corby]
 gi|295649660|gb|ADG25507.1| probable multidrug-efflux system transmembrane protein [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 1052

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/582 (12%), Positives = 169/582 (29%), Gaps = 40/582 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P  +P               + ++   
Sbjct: 10  RPVFATVISIIIVMVGVLS-----YFNLPIEQYPQVVPPT-------------IQVQASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   E +     +   +   ++T++F      +     V  
Sbjct: 52  PGANAKTVAETVATPIEQEVNGVENMLYMDSQSTDDGQMRLTITFKLGTDLDQAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  KL  + ++  + T       +++                   I    D+I   
Sbjct: 112 RVAVVEPKLPEEVRRLGITTNKNSPDLMLVVNLYSPNGQYDQTYIGNYAILHIRDKIRRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     L        +    +P  +     T   +       N         ++  +   
Sbjct: 172 EGVGNVLIFGASEYAMRLWLNPDLMNTFNLTANDVLAAVRAQNVQVASGKLNLQPQKKQY 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G +Y +E K  +              K  +    I     G R         +       
Sbjct: 232 GFEYHIETKGRL-------------VKKEEFENIIVKSGEGGRIVRLKDIGRVELGTQNY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T +        +     P     +          
Sbjct: 279 LTKGYLDKYPAVALPIYQRPGTNALATAQEIIKTMKTIAKDFPPGITYDMAYNPTLFVQQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   +I +++I T A++  +G +L   ++
Sbjct: 339 SIDAVFHTIYEAIALVVLVILIFLQTWRASVIPVVAIPVSLIGTFAVMQAIGFSLNYLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +    +   +   +     +   S +    +  +   +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERNIQAGMNPRDAARKTMTEVGSALVAMGLVLIAVFLPT 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + F  T+ ++  IS+F ++++   M + +      ++I    L+ +   
Sbjct: 459 VFLEGISGRFYQQFGTTLAVATAISVFVSLTLTPTMAVLL-LRAHHETIKQEGLAWWRKP 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                  F R                        + YGI   
Sbjct: 518 VYGFLHGFNRLMEGFSRQYGKLVATLTRKTALMIIAYGIFIS 559



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 71/207 (34%), Gaps = 7/207 (3%)

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
             +       +K+ +      I           + +    ++   +  I + + +  +++ 
Sbjct: 844  SSDEALATMEKLAQNNLPDGIGYEWTEIAYQQKMVGNTALMAFTLGVIFIFLVLAAQYES 903

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W   L  I  + + +  ++    + G+E N+      L LIG +  + +++ +  R   +
Sbjct: 904  WSLPLAVILIVPMCLFSSMLGVKILGMENNIMTQIGFLVLIGLASKNAILIVEFAR---Q 960

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
            L     +      ++    L   + TS A  + V P+ +    G  +  +  + +  G++
Sbjct: 961  LENRGYNLWKAAIQAAKLRLRPILMTSFAFILGVFPLIIATGAGAEMRRALGVAVFSGML 1020

Query: 807  VAASSSIFIAAPILLFIYDWRAKNARI 833
                  +       + I        ++
Sbjct: 1021 GVTFFGLIFTPLFYVLISRLSRYKRKL 1047



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 70/203 (34%), Gaps = 9/203 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +    + ++ + K     +      N  +   +    +       + +  + +LI++ 
Sbjct: 304 ATAQEIIKTMKTIAKDFPPGITYDMAYNPTLFVQQSIDAVFHTIYEAIALVVLVILIFLQ 363

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  ++  +  + + +  T       G   N   +  ++  IG  V+D +VV + M 
Sbjct: 364 ---TWRASVIPVVAIPVSLIGTFAVMQAIGFSLNYLTLFGLVLAIGIVVDDAIVVVENME 420

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
           +N++     ++ RD   K++ E     V   +      LP     G        F   +A
Sbjct: 421 RNIQA---GMNPRDAARKTMTEVGSALVAMGLVLIAVFLPTVFLEGISGRFYQQFGTTLA 477

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
               ++   S+ +   + + +  
Sbjct: 478 VATAISVFVSLTLTPTMAVLLLR 500


>gi|258623910|ref|ZP_05718863.1| protein export protein SecD [Vibrio mimicus VM603]
 gi|258583704|gb|EEW08500.1| protein export protein SecD [Vibrio mimicus VM603]
          Length = 612

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 152/512 (29%), Positives = 261/512 (50%), Gaps = 25/512 (4%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            +   S+  ++   +  + I LGLDLRGG   +L VD D           D ++  L+ E
Sbjct: 113 TYSYVSVAPKWLDELGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAE 172

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            +   S++ + N    +F     +    + V  +LQ        +  +   +      + 
Sbjct: 173 RLRGVSVQAVGND---AFDVKTQQPQALNHVRQYLQ--------ENYRGWDIRQGSDHLQ 221

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + 
Sbjct: 222 VQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKN 281

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA ++F++           F    L D +G   ++  +  +SG H+  A A  D  
Sbjct: 282 VIGATASLAFYEAKS--PTDARSFDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNM 339

Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
               V        G            +    V R+         +    + +    Q+  
Sbjct: 340 GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNAHGETVRSERVISVATIQSQL 399

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  GL 
Sbjct: 400 GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLA 459

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432
           + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N+
Sbjct: 460 MTLTFMALWYRRLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 519

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T+
Sbjct: 520 LIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTL 579

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GL +L SMF+ +   RA++  +      + + 
Sbjct: 580 GLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|217972304|ref|YP_002357055.1| preprotein translocase subunit SecD [Shewanella baltica OS223]
 gi|217497439|gb|ACK45632.1| protein-export membrane protein SecD [Shewanella baltica OS223]
          Length = 604

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 165/527 (31%), Positives = 274/527 (51%), Gaps = 34/527 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  ++  P  L  S+    PS +       I LGLDLRGG   +L+VD D       +
Sbjct: 94  TLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGE 153

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
              D LR F++++ I   S+   Q N++ L+  D+  +  +   +               
Sbjct: 154 ALVDSLRQFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQ------- 206

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
               L  T    + I LSQ    ++ +  ++Q+++++R RI+++GI+E+ +QR G HRI 
Sbjct: 207 ----LSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGDHRIR 262

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           I+LPG QDP+  + ++G TA ++F +V               L D  G    V     + 
Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLNDKSGKPIYVSRTPVLG 317

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306
           G H+  A A+         V+I+ D +G ++  E +R NIGKP+A               
Sbjct: 318 GDHIVDARASLGEMGM-AEVNINLDRVGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAK 376

Query: 307 --------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                      Q+    + +I+G  T + A  LA +LRAGS+   + IVEER +G  LG+
Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
           ++I  G  A+  G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A LTLP I
Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG+VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STIFD+N T +I  VVL
Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +  G G ++GFA+T+GL +L SMFT I   RA++  +      + + 
Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDVSRHVR 603



 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 90/256 (35%), Gaps = 5/256 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    + +          +    ++ L       G    Q
Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I  G   + +     L+++ + ++  
Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID   +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580

Query: 811 SSIFIAAPILLFIYDW 826
           + IF +  ++  +Y  
Sbjct: 581 TGIFASRALINLVYGR 596


>gi|190573980|ref|YP_001971825.1| preprotein translocase subunit SecD [Stenotrophomonas maltophilia
           K279a]
 gi|190011902|emb|CAQ45523.1| putative protein-export membrane protein [Stenotrophomonas
           maltophilia K279a]
          Length = 626

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 159/519 (30%), Positives = 273/519 (52%), Gaps = 37/519 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDL+GG H VL+VD+   ++  L  Y++++RS L+   I
Sbjct: 111 NLASTVPDWLANLGGRPMVLGLDLQGGVHFVLQVDQKAALDKRLDAYTEDVRSTLRDARI 170

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I  + + S   +         ++          +  L    +   I++
Sbjct: 171 AYQSVERRADNSIVANLSPSAGDDAAQRARAALVK---------AQPTLGYDVSGNRITV 221

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  I Q+ + AIEQ++  +R R++Q+G++E  IQR G+ R+++QLPG QD +  +++
Sbjct: 222 TVPETEIAQIANGAIEQNINTLRNRVNQLGVAEPIIQRQGADRVVVQLPGVQDTAEAKRM 281

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + +  V+  N++     G              G   L+  +V ++G  + GA A
Sbjct: 282 IGATATLEYRAVVEGNAQDAIDSGRIPPEAKVYQRRDGGGPILLNKRVIVTGDQMVGAQA 341

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
             D  +  P V ++ + +G +R F+ T  N+ KP+AVV   RV T  +++     G    
Sbjct: 342 VTDSTSGAPAVSVTLNNVGGQRMFDFTSANVNKPMAVVYTERVPTVTLVDGQEVRGFKVN 401

Query: 320 SGNFTIE------------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               ++                    A  LA +L++GSL   ++ VEER VG  LG++++
Sbjct: 402 EEVISVANINGVFGKNFQTTGLQKKEADDLAKLLKSGSLAAPMDFVEERVVGPSLGAENV 461

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G  A+V   +  ++F  V Y  +G++   ++  N+++ +A++SL GAT+TLP  AG+ 
Sbjct: 462 KNGMRAVVFAFLFTLVFFSVYYRMFGVITSIAMLFNLLIVVAVMSLFGATMTLPGFAGLA 521

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL+VD+N+L+NERIREE R       ++  G+ RA  TI D+N+T LI  V LF FG
Sbjct: 522 LSVGLSVDANVLINERIREELRAGVPGKTAIVTGYERASGTILDANLTGLIVGVALFAFG 581

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            G ++GFA+TM + I  SMFTAI++ RA+   I   +K 
Sbjct: 582 TGPLKGFALTMIIGIFASMFTAITVSRALATLIYGRRKK 620



 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 91/254 (35%), Gaps = 4/254 (1%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + V+    V    +    E                N +    +Q      +    
Sbjct: 371 NVNKPMAVVYTERVPTVTLVDGQEVRGFKVNEEVISVANINGVFGKNFQTTGLQKKEADD 430

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
                K   +          +VGP +  E ++ G+  V+ + +  L++  + ++  F + 
Sbjct: 431 LAKLLKSGSLAAPMDFVEERVVGPSLGAENVKNGMRAVVFAFLFTLVFFSVYYRM-FGVI 489

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
               ++ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+ ++      
Sbjct: 490 TSIAMLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRAGVPGK 549

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           +    I        G  +  ++   I  + +  +G   +  FA+ M  GI  +  ++I +
Sbjct: 550 T---AIVTGYERASGTILDANLTGLIVGVALFAFGTGPLKGFALTMIIGIFASMFTAITV 606

Query: 816 AAPILLFIYDWRAK 829
           +  +   IY  R K
Sbjct: 607 SRALATLIYGRRKK 620



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 26/119 (21%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W  ++  ++  +  L ALPN   +    +  +             RGG     ++
Sbjct: 10  LEFPRWKYVVILIVLALSALYALPNIYQKDPALQITAN------------RGG-----QI 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           D             D + + LK  G+    + +    + +   D + +   +D +   +
Sbjct: 53  D---------DALRDRVLADLKTAGVTPVGVEKEGESLIVRLPDLKAQSAASDALRDTV 102


>gi|187925230|ref|YP_001896872.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phytofirmans PsJN]
 gi|187716424|gb|ACD17648.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phytofirmans PsJN]
          Length = 1073

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 67/575 (11%), Positives = 156/575 (27%), Gaps = 46/575 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPA-------------VQISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   +     +   S     +    ITL+FA     +    +V  
Sbjct: 50  PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++     T      +++     +    +  + +  +     D +   
Sbjct: 110 KLQLATPLLPQAVQQLGTKVTKSSSSFLLVMAFVSEDGSMNKYDLANYVASNIQDPVSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    D ++L     T   +       N    G   G        
Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVETALQAQNVQVAGGSLGGTPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        R        I       
Sbjct: 229 VLQATITEATLL-------------NTPEQFGNVLLKVNQDGSRVRIKDVARIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A L        +             
Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATAKAVRAKVAELSKYFPHGLVVQYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++ L+G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMGLVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMQEEGLSPRDATRKAMDQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I+     +   
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIEQGHQEKTTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                   F ++R             S   L  + 
Sbjct: 511 FFGWFNRTFNKSRDKYHSGVHHVIKRSGRWLIIYM 545



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +  +   +                 +++A  + +     ++++  
Sbjct: 258 SRVRIKDVARIELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRAKVAELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     L     + + + 
Sbjct: 318 PHGLVVQYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N  ++  ++  IG  V+D +VV + +     +    +S RD   K++
Sbjct: 378 GTFAIMGLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMQEEGLSPRDATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 76/221 (34%), Gaps = 8/221 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++    PG S  Q                        +   +   +    
Sbjct: 816  ERYNGISAVEIQGAAAPGKSTGQAMTAMEALVAKLPAGVGYEWTGLSLQERQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YGISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+        +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQGEGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                G +   +    +  G++ A   +IF+     + I   
Sbjct: 991  SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 135/520 (25%), Gaps = 28/520 (5%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         L     G +       
Sbjct: 536  RSGRWLIIYMVVIFAVGLLFV------KLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              D  +  L      + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LKDVSDYLLNTEKSIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHSDQKVQALVGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +           L+       I  + +    D  +        E + +  + +    +  
Sbjct: 650  LFMHFGSYKNA-LVYPVNPPSIPELGTAAGFDFELQDRAGVGHEKLMEARNMLLGMAAKD 708

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
              L   R        Q    +     +   +S   +    S       V    D+DG   
Sbjct: 709  PTLAQVRPNGLNDTPQFKVDIDHEKASALGVSLSAIDQTFSIAWASQYVNNFLDTDGRI- 767

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                KV + G      T       +            +      T  +        +   
Sbjct: 768  ---KKVYLQGDAPFRMTPEDLNAWYVRNSAGGMVPFSSFASGTWTYGSPKLERYNGISAV 824

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +                    T   A +       G     L++ E ++          
Sbjct: 825  EIQGAAAPGKSTGQA------MTAMEALVAKLPAGVGYEWTGLSLQERQSGSQA------ 872

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  I   +V + L  +             + L VI  L   +L G    +    G++
Sbjct: 873  -PILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931

Query: 422  LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +GL+  + IL+ E  RE +  +      +           I  +++  ++  + L   
Sbjct: 932  TTVGLSAKNAILIVEFARELQQGEGMGPIEAALEAARLRLRPILMTSLAFILGVMPLAIS 991

Query: 481  ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
               G  +       +   +L + F AI ++    + I   
Sbjct: 992  NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031


>gi|90021054|ref|YP_526881.1| secretion protein SecD [Saccharophagus degradans 2-40]
 gi|89950654|gb|ABD80669.1| protein-export membrane protein SecD [Saccharophagus degradans
           2-40]
          Length = 622

 Score =  195 bits (495), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 156/526 (29%), Positives = 277/526 (52%), Gaps = 38/526 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       +SLGLDL GG H +LEVD +  +   ++ + D++   ++KE +
Sbjct: 105 NLAPTTPQWLVDLGAGPMSLGLDLAGGVHFLLEVDTESVLAKEMEGFEDDISGLIRKEKL 164

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S R    +I ++          +D +   +  +  K   + +        +  ++ V
Sbjct: 165 YGVSTRLTDGEIVIT--------ADSDDLRTDVLLLLKKELSELETKRTERGGKYIVTAV 216

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            S   I +   HA++Q++  +R R+++IG+SE  +Q  G +RI++QLPG QD +R +++L
Sbjct: 217 PSDAYIREKEKHAVQQNLTTLRNRVNEIGVSEPLVQTQGRNRIVVQLPGIQDTARAKKIL 276

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL---VEDKVEISGIHLNGATANFDP 263
           G TA + F    P +          F  +    +Y    +E +  ++G ++ GAT  FD 
Sbjct: 277 GKTANLEFRLEAPKDGLASQKEHFEFRDEIKQARYGGAWLEKRPFVTGQNVTGATPGFDD 336

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLD 299
           +++ P+V IS D  GA      TR ++ + +                           + 
Sbjct: 337 QSNSPMVSISLDSKGAGLMHRKTRKHVNESMAIVLIEYDTKVREEVNEAGETVIVTEQVP 396

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              + +        S + QI+G  + E A  LA  +RAG+L   ++ VEER +GA LG +
Sbjct: 397 NPKMVSLANINEALSKRFQITGLDSPEEASELALYIRAGALAAPMSFVEERTIGASLGQE 456

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I  G  ++  GLVL+++FM+V Y  +G  A+ ++ +N+++ +A++S+ GATLTLP IAG
Sbjct: 457 NIDLGVKSVQLGLVLVLIFMMVFYKVFGFFANLALAVNLMVLVAVMSMFGATLTLPGIAG 516

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL +G+AVD+N+L+  RI+EE +   S   +++ G+  A+STI D+N+T  I  ++L+ 
Sbjct: 517 IVLTVGMAVDANVLIFSRIKEELKAGSSSQTAINSGYDSAFSTILDANLTTFIVAIILYA 576

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G G V+GFA+T+ + I+ SMFTAI   RA++      + +K + I
Sbjct: 577 IGSGPVKGFAVTLAIGIITSMFTAIVGTRALVNLAFGGRNVKKLWI 622



 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 106/284 (37%), Gaps = 6/284 (2%)

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
              +SI        L+      +  +    + +        +++     +   +      
Sbjct: 340 SPMVSISLDSKGAGLMHRKTRKHVNESMAIVLIEYDTKVREEVNEAGETVIVTEQVPNPK 399

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                  N  +  ++Q     +     E  +  +   +    +      +G  + +E I 
Sbjct: 400 MVSLANINEALSKRFQITGLDSPEEASELALYIRAGALAAPMSFVEERTIGASLGQENID 459

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            G+  V +  + +LI++ + +K  F   A   L +++   +   ++FG    L  +A ++
Sbjct: 460 LGVKSVQLGLVLVLIFMMVFYKV-FGFFANLALAVNLMVLVAVMSMFGATLTLPGIAGIV 518

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             +G +V+  V+++ R+++ +K  ++S +    I+   +      +  ++  FI  + + 
Sbjct: 519 LTVGMAVDANVLIFSRIKEELKAGSSSQT---AINSGYDSAFSTILDANLTTFIVAIILY 575

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF-IYDWRAKN 830
             G   +  FA+ +A GI+ +  ++I     ++         K 
Sbjct: 576 AIGSGPVKGFAVTLAIGIITSMFTAIVGTRALVNLAFGGRNVKK 619



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 43/164 (26%), Gaps = 25/164 (15%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +L   +  IG L +LPN        +                  G    +EVD
Sbjct: 3   RYPLWKYLLILAVVVIGFLYSLPNIYVPDPAIQI----------------SGIRSGVEVD 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                        +     L++ GI  F     +    + FA    +      V   L  
Sbjct: 47  A---------NALNTATKALEENGIQYFGAEAGEKSALIRFATQDDQLRARTIVQRALSQ 97

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
            N  +  +          +     +    ++   +   +E   E
Sbjct: 98  ENYVVAFNLAPTTPQWLVDLGAGPMSLGLDLAGGVHFLLEVDTE 141


>gi|167647069|ref|YP_001684732.1| protein-export membrane protein SecF [Caulobacter sp. K31]
 gi|167349499|gb|ABZ72234.1| protein-export membrane protein SecF [Caulobacter sp. K31]
          Length = 316

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 162/303 (53%), Gaps = 3/303 (0%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +       LIP     +F++        S L  + S    FT GLN GIDFKGG+ L   
Sbjct: 1   MASWPLIRLIPRSTHFRFVKWAPIAAIFSALLIVGSGVSFFTQGLNLGIDFKGGVALEAR 60

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              P+  + +R+ L      D   Q F    + ++R   + G +  Q  +   ++ K+ +
Sbjct: 61  MPTPIPTAELRTALAGFGAHDAQVQPFGSPNSAMIRFLPEAGQNPNQAAM--DLEGKLKQ 118

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             P  TI +   +G K+S EL+ KG + + I+   ML YIW RF   +  GA+  ++ DI
Sbjct: 119 RFPTMTIPSHSAIGAKVSGELLGKGFMALGIALALMLGYIWFRFGLSYGTGAVVAVLHDI 178

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             TLG  ++  IEF++T++AA+LT+IGYS+N+KV+ +DR+++N++ Y  +   R++ID S
Sbjct: 179 LLTLGLLSVLRIEFSMTSIAALLTVIGYSMNEKVITFDRLKENLRKY-KTTPLREIIDLS 237

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            NE L R++ T   A +++     +GG V+      M FGI++   SS++IA P++L   
Sbjct: 238 ENERLSRTIITGTTALLALGGTMFFGGPVLFPLVFTMTFGIIIGTYSSVYIALPLILVWG 297

Query: 825 DWR 827
             R
Sbjct: 298 VKR 300



 Score = 38.5 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 75/206 (36%), Gaps = 4/206 (1%)

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           +           A +          P               G           +A  +++
Sbjct: 96  RFLPEAGQNPNQAAMDLEGKLKQRFPTMTIPSHSAIGAKVSGELLGKGFMALGIALALML 155

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
                     +G  A  ++  +++LTL LLS+L    ++ SIA ++  IG +++  ++  
Sbjct: 156 GYIWFRFGLSYGTGAVVAVLHDILLTLGLLSVLRIEFSMTSIAALLTVIGYSMNEKVITF 215

Query: 436 ERIREENRKNQSV--FCSLD-MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           +R++E  RK ++      +D     R   TI       L     +FF GG  +     TM
Sbjct: 216 DRLKENLRKYKTTPLREIIDLSENERLSRTIITGTTALLALGGTMFF-GGPVLFPLVFTM 274

Query: 493 GLSILISMFTAISIVRAMMIFIIRYK 518
              I+I  ++++ I   +++     +
Sbjct: 275 TFGIIIGTYSSVYIALPLILVWGVKR 300


>gi|254227780|ref|ZP_04921211.1| protein-export membrane protein SecD [Vibrio sp. Ex25]
 gi|262395822|ref|YP_003287675.1| protein-export membrane protein SecD [Vibrio sp. Ex25]
 gi|151939822|gb|EDN58649.1| protein-export membrane protein SecD [Vibrio sp. Ex25]
 gi|262339416|gb|ACY53210.1| protein-export membrane protein SecD [Vibrio sp. Ex25]
          Length = 612

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 156/513 (30%), Positives = 272/513 (53%), Gaps = 27/513 (5%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            F   S+   + + M  + I LGLDLRGG   +L VD +           DE+++ L+ +
Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRNALIDEIKASLRDQ 172

Query: 85  GIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
            +    +R +  N+I +    +   +    +V  FL+              +V ++ +  
Sbjct: 173 RVRGVQIRAESGNRIAV----NSESDTALAEVNKFLRQ--------NYPGWVVKSSSRGF 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  S+ NI +  S  ++Q+++I+R RI+++GI+E+ +QR G   I I+LPG QDP++ +
Sbjct: 221 VLEPSEQNIQEFQSTTLQQNLKIMRGRIEELGITEALVQRQGKDSIRIELPGVQDPAQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++V      +        L+D+DG   ++E +  ++G H+  A A  D 
Sbjct: 281 NVIGATASLAFYEVKDAGQARSGQ--DLVLKDNDGRTVVLEKRPVLTGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+       V      + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +++ ERI+++ R+ +S   ++D+GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMFT +   RAM+  I      + + 
Sbjct: 579 LGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 611



 Score =  107 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L  ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SF   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+   A+ 
Sbjct: 586 SMFTGVFASRAMINLIWGRDARR 608


>gi|238759233|ref|ZP_04620400.1| Acriflavine resistance protein B [Yersinia aldovae ATCC 35236]
 gi|238702520|gb|EEP95070.1| Acriflavine resistance protein B [Yersinia aldovae ATCC 35236]
          Length = 1050

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 68/689 (9%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ISISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGSVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNFGLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVQLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L+         +           
Sbjct: 276 NVIARYNGKPAAGIGIKLATGANALNTSAAVKAELEKLQPFFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++
Sbjct: 336 SIHEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSVFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +A        + +    +     +  L         + +G     V
Sbjct: 516 NRMFEKSTHHYTDSVANILRSTGRYLLIYLAIVVGMGVLFLRLPSSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L  +    +  +       F V      G           +K    
Sbjct: 576 QMPAGATQERTQKVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFISLKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RPGAENKVPAIVDRASAAFSQIKDGLVFA 664



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  ++  +        +        +++  +  ++   +K+    
Sbjct: 258 SQVRLKDVAIVQLGAESYNVIARYNGKPAAGIGIKLATGANALNTSAAVKAELEKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + + +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISIHEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSVFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +L G+  ++     +LT IG S  + +++ +  +  M          +   +++   L 
Sbjct: 915  ASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLEAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+ +    G     +    +  G++ A   +I
Sbjct: 973  PILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 1018


>gi|238021373|ref|ZP_04601799.1| hypothetical protein GCWU000324_01272 [Kingella oralis ATCC 51147]
 gi|237868353|gb|EEP69359.1| hypothetical protein GCWU000324_01272 [Kingella oralis ATCC 51147]
          Length = 313

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 148/303 (48%), Gaps = 1/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FM        IS+   I ++  L T GLN  ++F GG  + V       
Sbjct: 1   MELFHFKRDIPFMSYGKLTTFISLATFILAVIFLLTRGLNLSVEFTGGTLMEVEYASAQG 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             + +       +     Q      N  + ++    + ++  ++   V   + +     +
Sbjct: 61  ADLNKVRHSLDTLKMGEIQVQALGTNKHIMIRLPNREDLSSAQLSNQVMDVLKKDSSDVS 120

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E +GP +  EL+  G+  + +    ++IY+ +RF+W FA+ AI   + DI   LG 
Sbjct: 121 LRQVEFIGPAVGDELVSHGLTALGMVVFGIIIYLAMRFEWRFAVSAIIANMHDIVIILGC 180

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETL 769
           FA F  EF+LT +A VL ++GYSVN+ VVV+DR+R+N    +  + S  ++ID +I  T+
Sbjct: 181 FAFFQWEFSLTVLAGVLAVLGYSVNESVVVFDRIRENFYKGSMRNHSVPEVIDNAITHTM 240

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           GR+V T  +    V+ M ++GG+ +  FA+ +  GIV    SS+ +A+P+LL     R  
Sbjct: 241 GRTVITHGSTEAMVISMLIFGGAALHGFAMALTIGIVFGIYSSVLVASPLLLMFGLDRHN 300

Query: 830 NAR 832
             +
Sbjct: 301 IVK 303


>gi|323951214|gb|EGB47089.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H252]
          Length = 1034

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPREATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|301647042|ref|ZP_07246874.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 146-1]
 gi|307139954|ref|ZP_07499310.1| multidrug efflux system protein [Escherichia coli H736]
 gi|331643966|ref|ZP_08345097.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           H736]
 gi|301074792|gb|EFK89598.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 146-1]
 gi|331037437|gb|EGI09661.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           H736]
          Length = 1034

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +                    +                      +      
Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL +GL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLALGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V ++  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291

Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T + ++    ++    P               +  I + +  +  + + +
Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  +G  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLALGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +  ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|170768847|ref|ZP_02903300.1| multidrug efflux transport protein EefB [Escherichia albertii
           TW07627]
 gi|170122395|gb|EDS91326.1| multidrug efflux transport protein EefB [Escherichia albertii
           TW07627]
          Length = 1031

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/683 (10%), Positives = 188/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P                     
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPTIR---------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQTGVTVEKSQSNFLLIAAVYDTTDKATSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYNAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 GKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F++T+  ++L+S+  A+++  A+   ++++              F    
Sbjct: 460 FGGSTGVIYRQFSVTIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +  Q        R        +     + L+        +  +   ++ V    P   +
Sbjct: 520 EVRYQHGVLYVLQRAARTIGVYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLST 650
             R+   + QI D    N     + +  +      G           +K         +T
Sbjct: 580 AARTAEVNRQIVDWFLVNEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRATKELGTIRDATVFAM 662



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 87/235 (37%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +  +   +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIKDVARVEMGSEDYNAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F++     I+ A   S+ +A  +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVT----IISAMLLSVVVALTL 489


>gi|148255765|ref|YP_001240350.1| preprotein translocase subunit SecF [Bradyrhizobium sp. BTAi1]
 gi|146407938|gb|ABQ36444.1| protein translocase subunit secF [Bradyrhizobium sp. BTAi1]
          Length = 335

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 114/295 (38%), Positives = 185/295 (62%), Gaps = 6/295 (2%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590
            ++PD     F + R     IS   SI +I L FTHGLN+GIDFKGG  L V A     D
Sbjct: 29  RIVPDDTHFDFTQFRRISFPISATLSIIAIVLFFTHGLNFGIDFKGGTLLEVRAKSGTAD 88

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ +RS L  L +G++  Q F G  + L+R   QPG   AQ   +  V+  +        
Sbjct: 89  IASMRSELSKLNLGEVQLQQFGGPADVLIRFAAQPGGDSAQQEAVNKVRGAL---GDTVD 145

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +  E++G ++S EL+  G++G++++ +++LIY+W RF+W FALGA+   + DI  T+GF
Sbjct: 146 YRRVEVLGARVSGELLAMGMLGLMLAIVSILIYLWFRFEWQFALGAMIANVHDIVLTIGF 205

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            ++  ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y   +    L+++SIN TL 
Sbjct: 206 MSISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLS 264

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824
           RS+ T +   +++L + ++GG+ I SF   M FG ++V   +SIFIAAPIL+++ 
Sbjct: 265 RSIITHVTVTLALLALLLFGGTAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 319


>gi|293603369|ref|ZP_06685797.1| AcrB/AcrD/AcrF family protein [Achromobacter piechaudii ATCC 43553]
 gi|292818279|gb|EFF77332.1| AcrB/AcrD/AcrF family protein [Achromobacter piechaudii ATCC 43553]
          Length = 1038

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 74/635 (11%), Positives = 181/635 (28%), Gaps = 41/635 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  IGL+        +  +  +P                      +  
Sbjct: 9   KRPVFASVLSLIIVLIGLIS-----YSRLTVREYPKIDEPIV---------SVDTTYKGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++   +     R  ++ I + F  SR  +  A +V   +  
Sbjct: 55  SPEVIESQVTKPLEDQLAGIEGVDVMTSRSRSERSLINIKFNLSRNPDAAAAEVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  + ++         I+            AI+ S  I R    ++ +     
Sbjct: 115 ARRFLPDEIDEPIIGKVEADSQPIIYIAVES--GSFSAIQTSDYINRYIKTRLSVLPGAA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    D  +L     T   +       N          R    S  +  
Sbjct: 173 EVRVFGERLPSMRIYVDRDKLAAYGLTVQDVEAALRSQNVEIPAGRIESRAREFSVVSST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                      D+    +            +    A      
Sbjct: 233 DLQTPAQFE--------------------DVIVANVKGYPVRLRDVSKVEIGAASDRVLS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + ++  +     + A      L           +   +      S   
Sbjct: 273 RFNGKPAINIGVTRQSTANPLELSKAARQEIERLNETLPAGMKLTIAYDSSVFIERSIDS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F  +   +  ++   +I ++++   AL+   G ++   ++  +V
Sbjct: 333 VFHTIGEAIILVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYFFGFSINTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G       +    +T +     L F  
Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMPRKEAALRGSKEIGFAVVAMTMTLVTVYAPLAFAT 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF--FLIPD 536
           G   R    FA+ +  ++L+S F A+++   M   ++R++   S   N +  +   L   
Sbjct: 453 GRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQSSHSRWYNLIEGWLNGLSNG 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R   + + I  ++     +    +   +       +        + + +  
Sbjct: 513 YRRLLGASLRHRWLVVVIGVAVALGSGVLFKVVKSELAPIEDRGVVFGIVSSPEGATLNY 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            L+S+   +  +          V + +        
Sbjct: 573 TLDSMLGIEKFYSEISEASGSQVTVGFPTVTDGTA 607



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 84/249 (33%), Gaps = 7/249 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PV L  V           +  +        +   +    + +  ++      +++ E +P
Sbjct: 252 PVRLRDVSKVEIGAASDRVLSRFNGKPAINIGVTRQSTANPLELSKAARQEIERLNETLP 311

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                             I      +  + I +++ I+   +    ++  I T+ + +  
Sbjct: 312 AGMKLTIAYDSSVFIERSIDSVFHTIGEAIILVVLVIFFFLRNLRASIIPIVTIPVSLVG 371

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                  FG   N   + A++  IG  V+D +VV + +    +     +  ++   +   
Sbjct: 372 ACALMYFFGFSINTLTLLAMVLAIGLVVDDAIVVLENI---YRHIEEGMPRKEAALRGSK 428

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     V  +M       P+A   G        FA+ +A  ++V+   ++ +   +   +
Sbjct: 429 EIGFAVVAMTMTLVTVYAPLAFATGRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVL 488

Query: 824 YDWRAKNAR 832
              ++ ++R
Sbjct: 489 LRHQSSHSR 497



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 60/519 (11%), Positives = 132/519 (25%), Gaps = 42/519 (8%)

Query: 12   SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             ++  IG+ +AL + +   ++    + +    +  G+           V   +     L 
Sbjct: 525  WLVVVIGVAVALGSGVLFKVVKSELAPIEDRGVVFGI-----------VSSPE--GATLN 571

Query: 72   MYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENI-----ADKVTLFLQGVNSK 125
               D +             + +   +++T+ F        I      ++     Q +  +
Sbjct: 572  YTLDSML----GIEKFYSEISEASGSQVTVGFPTVTDGTAILRLKPWEERERKQQAITQQ 627

Query: 126  LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
            L         V         +        V    + Q+      R+  + ++E       
Sbjct: 628  LQPQFASLPGVRAFPTNPPSLGQSARSKPVEFIIMSQASYAELARLTDVFLTEL------ 681

Query: 186  SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
              R    L       RL                          G        G Q     
Sbjct: 682  --RKYPGLLNLDTDLRLNTPELRVRVDRDKMAD--VGANVDTVGRTLETMLGGRQVTRYK 737

Query: 246  KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
                    +   T                   G+    +             L+      
Sbjct: 738  DEGEQYDVIVQVTPRDRATPTDISGIYVRARDGSMVQLDNLLGVHEGVSPQSLNHFNRLR 797

Query: 306  PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
             V   A  +        + +         +    LP  +    +        S       
Sbjct: 798  AVKIDAAVAPG------YALGEVLTHMHQVARDVLPNTIVTDLDGQSREFRDSSGSIYLV 851

Query: 366  CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
              +    + +VL       +   +   S+ L++   L  L L G TL++ S  G++  +G
Sbjct: 852  FGMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQIGLITLVG 911

Query: 426  LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GG 482
            L     IL+ E   +   + + +F ++          I  +    ++ TV L      G 
Sbjct: 912  LITKHGILIVEFTNQLRDEGKELFAAVTEASVLRLRPILMTTGAMVLGTVPLALSTGAGA 971

Query: 483  GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             + +     +   +L+     + +V      I   +K  
Sbjct: 972  ESRQQIGWVLVGGLLLGTLLTLFVVPVAYTLIATARKKP 1010



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 49/128 (38%), Gaps = 6/128 (4%)

Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            G + ++       IY+ +      W      + ++ L +T  L    L G   ++ +  
Sbjct: 845 SGSIYLVFGMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQI 904

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++TL+G      +++ +      +L          + ++    L   + T+ A  +  +
Sbjct: 905 GLITLVGLITKHGILIVEF---TNQLRDEGKELFAAVTEASVLRLRPILMTTGAMVLGTV 961

Query: 785 PMAVWGGS 792
           P+A+  G+
Sbjct: 962 PLALSTGA 969


>gi|93006582|ref|YP_581019.1| hydrophobe/amphiphile efflux-1 HAE1 [Psychrobacter cryohalolentis
           K5]
 gi|92394260|gb|ABE75535.1| Hydrophobe/amphiphile efflux-1 HAE1 [Psychrobacter cryohalolentis
           K5]
          Length = 1100

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/696 (11%), Positives = 200/696 (28%), Gaps = 51/696 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  IG++  +        ++++P   P               + +    
Sbjct: 8   RPIFAWVMAILVMLIGIISVI-----NLPIEQYPRIAPPT-------------ISVSASY 49

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S       +TL+F +    +    +V  
Sbjct: 50  PGANAQTVENSVIQIIEQRMKGLDGLMYMSSSSSSNGSASVTLTFENGTDSDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  +         +++     +       + +  I    +D I   
Sbjct: 110 KLQAAMSSLPESVQRQGVNVNKSSSSFLMVQAFISEDGTMDRADIADYINSNVVDSISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DPSRLR      + +       N        G        
Sbjct: 170 EGVGEVQVFGS-TYAMRVWLDPSRLRSYNMVPSDVVNAIRAQNAQVSAGQLGQAPADTDQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                         I+      ++     +    +   +    +       ++    A  
Sbjct: 229 QV------------INATVTVQSYLQTPEEFQNILLKTDTSGAQVRLGDVADVEIGSADY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +           S     +   T E  G   A L        +++V          
Sbjct: 277 SVVSLYNGQEAAALGISLAGGANALETREAVGARMAELEKNFPIGLVSVVPYDTTPFVRL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + ++ T A+L + G ++ + ++
Sbjct: 337 SIEQVVMTLIEAIVLVFIVMFIFLQNWRATIIPTLAVPVVLLGTFAVLYVAGFSINVLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIAT 474
             +VL IGL VD  I+V E +    E   + S+  + +      +   I  + I + +  
Sbjct: 397 FAMVLSIGLLVDDAIVVVENVERILEEDPHISIKDATIQSMGEISKIVIGIALILSAVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKS 522
            + FF G      R F+IT+  ++++S   A+    A+ + +++           K+   
Sbjct: 457 PMAFFGGSTGVIYRQFSITLITAMVLSAIVALVFTPALCVTLLKRGKSHEKGNEEKQKGF 516

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 S F L            RF  + +    +I  + ++    +      +    + 
Sbjct: 517 FGWFNRSFFKLSRSYEGFVGKSFRFKWLYLIGYAAIIGVMVVVFLRIPGSFLPEEDQGIM 576

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
               +    S +    E L      +   + +    V        +     +     +  
Sbjct: 577 FTLVQLPAGSTLDETQEVLDKVSNYYTTQEADNIASVFTIAGFSFAGQGQNMGLAFVRLS 636

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                       + V  +       +     + + +
Sbjct: 637 DWEARSGDENTAQAVAGRAMGYFFTQLNEAQVFAIV 672



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 93/253 (36%), Gaps = 5/253 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V           +       E   L        +++     +     ++ 
Sbjct: 256 TSGAQVRLGDVADVEIGSADYSVVSLYNGQEAAALGISLAGGANALETREAVGARMAELE 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P+  +           R  I + ++ +I + + + I ++I  + W   +     + +
Sbjct: 316 KNFPIGLVSVVPYDTTPFVRLSIEQVVMTLIEAIVLVFIVMFIFLQNWRATIIPTLAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     + G   N+  + A++  IG  V+D +VV + + + +      IS +D   
Sbjct: 376 VLLGTFAVLYVAGFSINVLTMFAMVLSIGLLVDDAIVVVENV-ERILEEDPHISIKDATI 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     +  ++      +PMA +GGS       F+I +   +V++A  ++     +
Sbjct: 435 QSMGEISKIVIGIALILSAVFVPMAFFGGSTGVIYRQFSITLITAMVLSAIVALVFTPAL 494

Query: 820 LLFIYDWRAKNAR 832
            + +      + +
Sbjct: 495 CVTLLKRGKSHEK 507



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 86/255 (33%), Gaps = 11/255 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
             D  G   +       +  +   ++        ++  N     N             A +
Sbjct: 787  PDDIGKWYVRNEMGDMISFNAFSTSEWQSGSPRLTRYNSLPSMNIQGSAAPGLSTGEAMS 846

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             +  M++K    I    T  + E         ++    + +++  + +     +   W  
Sbjct: 847  SMEAMIEKLPEGIGYEWTGMSLEEQKSGAQAPMLYA--LSILVVFLCLA---ALYESWSI 901

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                +  + L +   + F  L G   ++     +LT++G S  + +++ +  ++      
Sbjct: 902  PFSVLLVIPLGVLGAVIFTWLRGFANDIYLQVGLLTVVGLSAKNAILIIEFAKE---HQE 958

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
               S ++ +  +  + +   + TS+A  + V+P+ +    G     +    +  G+V A 
Sbjct: 959  EGYSLKEAVMTAARQRMRPIIMTSLAFGLGVVPLFLASGPGSGSQNAIGTSVVGGVVSAT 1018

Query: 810  SSSIFIAAPILLFIY 824
               IF      ++I 
Sbjct: 1019 LLGIFFIPMFYIWIR 1033



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/419 (9%), Positives = 103/419 (24%), Gaps = 27/419 (6%)

Query: 107  FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
             +          +    ++LN      ++     +  +       I    +   +  +E 
Sbjct: 644  DENTAQAVAGRAMGYFFTQLNEAQVFAIVPPAITELGNASGFDLMIQDNGNLGHDGLLEA 703

Query: 167  IRQRIDQIGISESTIQRLGSHRILIQLPGE-QDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
                +     ++       + +          +  +      +   ++        S   
Sbjct: 704  RNMLLGMAAQNDQVAGVRPNGQEDSPQLKVNINQEQAAAYGLSLGNINSVISTAWGSSYV 763

Query: 226  FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
              F  R              +V + G   +    +   K +            A    E 
Sbjct: 764  NDFIDRGRI----------KRVFVQGEASSRTNPDDIGKWYVRNEMGDMISFNAFSTSEW 813

Query: 286  TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
               +        L    +                        A      +          
Sbjct: 814  QSGSPRLTRYNSLPSMNIQGSAAPGLSTG------------EAMSSMEAMIEKLPEGIGY 861

Query: 346  IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
                     +  S +      A+   +V + L  +             I L V+  +   
Sbjct: 862  EWTG-MSLEEQKSGAQAPMLYALSILVVFLCLAALYESWSIPFSVLLVIPLGVLGAVIFT 920

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G    +    G++  +GL+  + IL+ E  +E   +  S+  ++     +    I  
Sbjct: 921  WLRGFANDIYLQVGLLTVVGLSAKNAILIIEFAKEHQEEGYSLKEAVMTAARQRMRPIIM 980

Query: 466  SNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            +++   +  V LF     G G+      ++   ++ +    I  +    I+I      K
Sbjct: 981  TSLAFGLGVVPLFLASGPGSGSQNAIGTSVVGGVVSATLLGIFFIPMFYIWIRSVFPHK 1039


>gi|254701112|ref|ZP_05162940.1| Acriflavin resistance protein [Brucella suis bv. 5 str. 513]
 gi|261751645|ref|ZP_05995354.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 5
           str. 513]
 gi|261741398|gb|EEY29324.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 5
           str. 513]
          Length = 1046

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 85/267 (31%), Gaps = 18/267 (6%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S       G
Sbjct: 947  VLERESGKSAIEAAASAARLRFHPIVMTSLAFILGVVPLAVSTGAGSASRHSIGT----G 1002

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++    ++ FI  P+   +   +    
Sbjct: 1003 VIGGMLAATFI--PMFYSLIARKPPKK 1027



 Score = 41.6 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 60/537 (11%), Positives = 137/537 (25%), Gaps = 60/537 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFHPIVM 973

Query: 466  SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L           +     + +I    A + +      I R    K 
Sbjct: 974  TSLAFILGVVPLAV--STGAGSASRHSIGTGVIGGMLAATFIPMFYSLIARKPPKKH 1028


>gi|254038431|ref|ZP_04872489.1| multidrug efflux system protein [Escherichia sp. 1_1_43]
 gi|226840055|gb|EEH72076.1| multidrug efflux system protein [Escherichia sp. 1_1_43]
 gi|332345221|gb|AEE58555.1| inner membrane protein BpeB [Escherichia coli UMNK88]
          Length = 1034

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +                    +                      +      
Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V ++  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291

Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T + ++    ++    P               +  I + +  +  + + +
Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +  ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|312968403|ref|ZP_07782612.1| inner membrane protein [Escherichia coli 2362-75]
 gi|312286621|gb|EFR14532.1| inner membrane protein [Escherichia coli 2362-75]
 gi|320194752|gb|EFW69382.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli WV_060327]
 gi|323189122|gb|EFZ74406.1| inner membrane protein [Escherichia coli RN587/1]
          Length = 1034

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIQEVVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  +  + I + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|170693462|ref|ZP_02884621.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
 gi|170141617|gb|EDT09786.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
          Length = 1064

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/571 (11%), Positives = 152/571 (26%), Gaps = 38/571 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P                      
Sbjct: 8   RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPAVQ---------ISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  S L        +        ITL+FA     +    +V   LQ 
Sbjct: 54  AKTVENTVTQVIEQSMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++     T      +++     +    +  + +  +     D +   +   
Sbjct: 114 ATPLLPQAVQQLGTKVTKSSSSFLLVMAFVSEDGSMNKYDLANYVASNVQDPVSRIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D ++L     T   +       N    G   G          Q 
Sbjct: 174 TVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVQSALQAQNVQVAGGSLGGTPSVPGQVLQA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +   +                 +    +        +        +           
Sbjct: 233 TITEATLL-------------NTPEQFSNILLKVNPDGSQVRIKDVGRVELGGENYNFDT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +        L        +             S   
Sbjct: 280 KYNGQPTAGFGIQLATGANALATAKAVRAKVDELSKYFPHGLVVKYPYDTTPFVRLSIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A++S++G ++   S+ G+V
Sbjct: 340 VVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVMSVVGFSINTLSMFGLV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPRDATRKAMDQITGALVGVALVLSAVFVPVAFS 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F++T+  ++++S+  A+ +  A+   I     +K I              
Sbjct: 460 GGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHG 568
               F ++R             S   L  + 
Sbjct: 515 FNRTFNKSRDKYHSGVHHVIKRSGRWLIIYM 545



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +  +   +                 +++A  + +     ++++  
Sbjct: 258 SQVRIKDVGRVELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRAKVDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     L     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S RD   K++
Sbjct: 378 GTFAVMSVVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPRDATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 67/163 (41%), Gaps = 6/163 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   IS + + + +   ++ W      I  + L +   L    L G+E ++     +
Sbjct: 871  QAPILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGL 930

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT +G S  + +++ +  R+     +  +   +   ++    L   + TS+A  + V+P+
Sbjct: 931  LTTVGLSAKNAILIVEFARE--LQQSEGMGPIEAALEAARLRLRPILMTSLAFILGVMPL 988

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            A+    G +   +    +  G++ A   +IF+     + I   
Sbjct: 989  AISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 140/524 (26%), Gaps = 36/524 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         L     G +       
Sbjct: 536  RSGRWLIIYMVVIFAVGLLFV------KLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              D  +  L      + S     G       Q    + +   D   +++  +KV   +  
Sbjct: 590  LKDVSDYLLNGEKAIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHADEKVQALVGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +           +          +  +     ++   A     +++  R   +G++    
Sbjct: 650  LFMHFGSYKGALVYPVNPPSIPELGTAAGFDFELQDRAGVGHAKLMEARNMLLGMAAQDP 709

Query: 182  Q----RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 R        Q     D  +   L  + + +         S       V    D+D
Sbjct: 710  TLAQVRPNGLNDTPQFKVNIDHEKAAALGVSLSAI-----DQTFSIAWASQYVNNFLDTD 764

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            G       KV + G              +           G       +  +        
Sbjct: 765  GRI----KKVYMQGDAQFRMKPEDLNAWY-------VRNTGGGMVPFSSFASGEWTYGSP 813

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               R      +     +   + +G        ++A +            ++ER  G    
Sbjct: 814  KLERYNGISAVEIQGAAAAGKSTGQAMTAMEALVAKLPAGIGYEWTGLSLQERQSG---- 869

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
              S       I   +V + L  +             + L VI  L   +L G    +   
Sbjct: 870  --SQAPILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQ 927

Query: 418  AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  + 
Sbjct: 928  VGLLTTVGLSAKNAILIVEFARELQQSEGMGPIEAALEAARLRLRPILMTSLAFILGVMP 987

Query: 477  LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
            L      G  +       +   +L + F AI ++    + I   
Sbjct: 988  LAISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031


>gi|21231813|ref|NP_637730.1| preprotein translocase subunit SecD [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768061|ref|YP_242823.1| preprotein translocase subunit SecD [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113527|gb|AAM41654.1| protein-export membrane protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573393|gb|AAY48803.1| protein-export membrane protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 622

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 144/520 (27%), Positives = 251/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  ++VD+   +   L+ +++++R+ L+   I
Sbjct: 111 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLEGFAEDIRTTLRDGRI 170

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I +S  +    +     +               +  L    + + IS+
Sbjct: 171 AYRSVERRGDNSIQVSLGEGASADAARTALAK------------SQPTLTYDVSGQTISV 218

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L
Sbjct: 219 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 278

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N++     G                  L+  +  ++G  +  A+ 
Sbjct: 279 IGATASLEFRAVVEGNAEDAVRSGTIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASV 338

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
           + D      V     +  G R                      T   +       +  + 
Sbjct: 339 SNDQNGMPAVAVTLNNVAGQRMLDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 398

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A   GK   +       A  LA +L++GSL   ++ VEE  +G  LG++++ 
Sbjct: 399 EALSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 458

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   V  ++F  V Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 459 RGVTAVVFSFVFTLVFFTVYYRMFGAITSVALLFNLLIVIAVMSLFGATMTLPGFAGLAL 518

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 519 SVGLSVDANVLINERIREELRLGVPPKSAIVAGYEKAGGTILDANLTGLIVGVALYAFGT 578

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 579 GPLKGFALTMIIGIFASMFTAITVSRALAVLIYGSRKKLK 618



 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 94/254 (37%), Gaps = 4/254 (1%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V+    +    +    E   +              +    +Q               
Sbjct: 371 LMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLEKTEAENLAKL 430

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K   +          ++GP +  E + +G+  V+ S +  L++  + ++  F       
Sbjct: 431 LKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFVFTLVFFTVYYRM-FGAITSVA 489

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+ ++L    +  + 
Sbjct: 490 LLFNLLIVIAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRL---GVPPKS 546

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            I     +  G  +  ++   I  + +  +G   +  FA+ M  GI  +  ++I ++  +
Sbjct: 547 AIVAGYEKAGGTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRAL 606

Query: 820 LLFIYDWRAKNARI 833
            + IY  R K   +
Sbjct: 607 AVLIYGSRKKLKSV 620


>gi|331005920|ref|ZP_08329268.1| Protein-export membrane protein SecD [gamma proteobacterium
           IMCC1989]
 gi|330420276|gb|EGG94594.1| Protein-export membrane protein SecD [gamma proteobacterium
           IMCC1989]
          Length = 616

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 151/525 (28%), Positives = 275/525 (52%), Gaps = 35/525 (6%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
               P  +     + + LGLDL GG H ++EVD    V+  L+    EL+  L++  +  
Sbjct: 96  APTTPQWLVDLGASPMKLGLDLSGGVHFLMEVDTKAVVSTRLESMPIELKRQLRQAKLRY 155

Query: 89  FSMRQI-QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE---IS 144
            S+     N+I   F+ +  ++          +   +  +      L+  + E +   I 
Sbjct: 156 KSVDINANNQIVAKFSTADVRDQAMPV----FRAALADSSALANPFLIERSDEADSFYIR 211

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
             +++  I  +  +A+ Q++  +R R++++G+SE  +QR G  RI+++LPG QD +  ++
Sbjct: 212 ASMTEQAISDIEDYAVGQNLTTLRNRVNELGVSEPIVQRQGRTRIVVELPGVQDTAEAKR 271

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ---YLVEDKVEISGIHLNGATANF 261
           ++G TA + F      ++         +  + +        ++ +  I+G +++GA A F
Sbjct: 272 IIGKTANLEFRLEAEPDASLASKELFEYRDEGEQLATGGAYLQRRAVINGTNVSGAQAGF 331

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKP---------------------LAVVLDG 300
           D ++ +P V+I+ D  G  +    TR N+G+                        V +  
Sbjct: 332 DAESSQPNVNITLDSDGGAKMHRGTRKNVGRRLGVLFIEYKTRTQDANGNILAKPVQIIE 391

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           + + +    Q+  +   QI+G  +   A  LA +LRAG+L   +  V+E  +G  LG ++
Sbjct: 392 KRIISLATIQSALNANFQITGLGSAAEASELALLLRAGALAAPMTFVQESTIGPSLGEEN 451

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  ++  GL L+++FM+V Y  +G+ A+ ++  N++L  A++SL GATLTLP IAGI
Sbjct: 452 IRLGVLSVQLGLALVLIFMLVYYRLFGIAANIALAANLVLLTAIMSLFGATLTLPGIAGI 511

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +G+AVD+N+L+  RI+EE +   S   ++  GF RA++TI D+N T LI  V+L+  
Sbjct: 512 VLTVGMAVDANVLIFSRIKEELKNGLSPQGAISAGFDRAFTTILDANFTTLIVAVILYGI 571

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G G ++GFA+T+ + IL SMFTAI   RA++  +   +++K++ I
Sbjct: 572 GTGPIKGFAVTLAIGILTSMFTAIVGTRAVVNLMYGSRQVKTLSI 616



 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 41/246 (16%), Positives = 96/246 (39%), Gaps = 4/246 (1%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +        +      + +QI +    +    ++ L       G   A       +  + 
Sbjct: 369 IEYKTRTQDANGNILAKPVQIIEKRIISLATIQSALNANFQITGLGSAAEASELALLLRA 428

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +    T      +GP +  E IR G++ V +    +LI++ + ++  F + A   L  
Sbjct: 429 GALAAPMTFVQESTIGPSLGEENIRLGVLSVQLGLALVLIFMLVYYRL-FGIAANIALAA 487

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           ++       +LFG    L  +A ++  +G +V+  V+++ R+++ +K     +S +  I 
Sbjct: 488 NLVLLTAIMSLFGATLTLPGIAGIVLTVGMAVDANVLIFSRIKEELK---NGLSPQGAIS 544

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              +      +  +    I  + +   G   I  FA+ +A GI+ +  ++I     ++  
Sbjct: 545 AGFDRAFTTILDANFTTLIVAVILYGIGTGPIKGFAVTLAIGILTSMFTAIVGTRAVVNL 604

Query: 823 IYDWRA 828
           +Y  R 
Sbjct: 605 MYGSRQ 610


>gi|319944505|ref|ZP_08018776.1| protein-export membrane protein SecF [Lautropia mirabilis ATCC
           51599]
 gi|319742218|gb|EFV94634.1| protein-export membrane protein SecF [Lautropia mirabilis ATCC
           51599]
          Length = 314

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 162/303 (53%), Gaps = 3/303 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I FMR       ISI+F + ++  LFT GLN  ++F GG  +     +P D
Sbjct: 1   MELFKIRRDIPFMRHVTILNAISIVFFLLAVLFLFTRGLNLSVEFTGGTVMEFSYAQPAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L   R  +E L   +   QNF   ++ L+RL  + G S A+    E V   + +  P   
Sbjct: 61  LGKTRQAIEELGFSEPQVQNFGTSRDVLIRLPLKEGVSAAKQA--EQVLAALKQHDPSVE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP++ +EL   G + +++    ++IY+ +RF+W F +  I   + D+   LGF
Sbjct: 119 LRRNEFVGPQVGQELATSGAMALLVVIAGIVIYLAVRFEWKFGVAGIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-YTTSISFRDLIDKSINETL 769
           FA F  EF+L+ +AAVL ++GYSVN+ V+++DR+R+  +  +  +++   ++D +I  T 
Sbjct: 179 FAFFQWEFSLSVLAAVLAVLGYSVNESVIIFDRVREKFRERHARNMTTAQVLDHAITTTT 238

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R+V T  +  + VL M  +GG  +  F++ +A GI     SSIF+AA I++ +   R  
Sbjct: 239 SRTVITHTSTLMMVLSMLFFGGPTLHYFSLALAIGICFGVYSSIFVAAAIVMRLGLKRED 298

Query: 830 NAR 832
             +
Sbjct: 299 LVK 301


>gi|111023849|ref|YP_706821.1| preprotein translocase subunit SecF [Rhodococcus jostii RHA1]
 gi|110823379|gb|ABG98663.1| protein-export membrane protein [Rhodococcus jostii RHA1]
          Length = 410

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 135/296 (45%), Gaps = 12/296 (4%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R +   ++    + S+  +   G   GIDF+GG ++   A   V+ + V         
Sbjct: 49  GRRRFYYILTGTIVLISLLSILVRGFTLGIDFEGGSRIQFPAGGGVETAQVEEVYSEALG 108

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKITEIVPLSTIQNTEIVG 658
            D       G  +             AQ       + +  + K ++      + +   V 
Sbjct: 109 MDPVSVQTVGSGSSATVQIRSEALDAAQVVTLQNALYDEFQPKDSDGNVSKNVISVADVS 168

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
                ++ +K ++ +++  + + +YI +RF+   A+ AI  L  DI  T G ++L G E 
Sbjct: 169 ETWGGQITQKALIALLVFLVIVSVYIAVRFERDMAIAAIVALFFDIAVTAGVYSLVGFEV 228

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTS 776
               V  +LT++G+S+ D VVV+D++ +N +  L+ T  ++ +  + +IN+TL RS+ T+
Sbjct: 229 TPATVIGLLTILGFSLYDSVVVFDKVEENTRGILHLTRRTYAEQANLAINQTLMRSINTT 288

Query: 777 MAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + + + VL + V      G   +   A+    GI+V A SSIF A P+L+ + +  
Sbjct: 289 LISVLPVLALMVVAVWMLGVGTLKDLALVQLVGIIVGAYSSIFFATPLLVTLKERW 344


>gi|82545637|ref|YP_409584.1| integral transmembrane protein [Shigella boydii Sb227]
 gi|81247048|gb|ABB67756.1| integral transmembrane protein [Shigella boydii Sb227]
          Length = 1034

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 7/178 (3%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              + TS+A  + VLP+A+    G     +  I +  G+V A   +IF      + I  
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFLPVFFVVIRR 1030


>gi|332098814|gb|EGJ03771.1| inner membrane protein [Shigella boydii 3594-74]
          Length = 1034

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   +       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTNDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 7/178 (3%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              + TS+A  + VLP+A+    G     +  I +  G+V A   +IF      + I  
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAIFFLPVFFVVIRR 1030


>gi|307611015|emb|CBX00649.1| hypothetical protein LPW_23581 [Legionella pneumophila 130b]
          Length = 1052

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/582 (12%), Positives = 169/582 (29%), Gaps = 40/582 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P  +P               + ++   
Sbjct: 10  RPVFATVISIIIVMVGVLS-----YFNLPIEQYPQVVPPT-------------IQVQASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   E +     +   +   ++T++F      +     V  
Sbjct: 52  PGANAKTVAETVATPIEQEVNGVENMLYMDSQSTDDGQMRLTITFKLGTDLDQAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  KL  + ++  + T       +++                   I    D+I   
Sbjct: 112 RVAVVEPKLPEEVRRLGITTNKNSPDLMLVVNLYSPNGQYDQTYIGNYAILHIRDKIRRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     L        +    +P  +     T   +       N         ++  ++  
Sbjct: 172 EGVGNVLVFGASEYAMRLWLNPDLMNTFNLTANDVLAAVRAQNVQVASGKLNLQPQKNQY 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G +Y +E K  +              K  +    I     G R         +       
Sbjct: 232 GFEYHIETKGRL-------------VKKEEFENIIVKSGEGGRIVRLKDIGRVELGTQNY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T +        +     P     +          
Sbjct: 279 LTKGYLDKYPAVALPIYQRPGTNALATAQEIIKTMKTIAKAFPPGITYDIAYNPTLFVQQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +   +   +I +++I T A++  +G +L   ++
Sbjct: 339 SIDAVFHTIYEAIALVVLVILIFLQTWRASAIPVVAIPVSLIGTFAVMQAIGFSLNYLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +    +   +   +     +   S +    +  +   +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERNIQAGMNPRDAARKTMTEVGSALVAMGLVLIAVFLPT 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + F  T+ ++  IS+F ++++   M + +      ++I    L+ +   
Sbjct: 459 VFLEGISGRFYQQFGTTLAVATAISVFVSLTLTPTMAVLL-LRAHHETIKQEGLAWWRKP 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                  F R                        + YGI   
Sbjct: 518 IYGFLHGFNRLMEGFSRQYGKLVATLTRKTALMTIAYGIFIS 559



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/446 (10%), Positives = 129/446 (28%), Gaps = 19/446 (4%)

Query: 402  LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
            +  +  +  T++    +G          +        +E  R   +    +     +  S
Sbjct: 607  ILAIPGIAHTVSFTGFSGATFTNSSNAGAIFTPLLSFQERQRMGINYND-ILKRLRQELS 665

Query: 462  TIFDSNITAL-------IATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMM 511
            TI ++ I  +       I     F        G  + + +    +M  + +      ++ 
Sbjct: 666  TIKEALIVVIPPPPVRGIGNAGGFKMMLQDRGGRGLDVLMEAAATMVNSANQEKATTSVF 725

Query: 512  IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
             F         + ++      L      +      + G      F+            + 
Sbjct: 726  TFFENSTPRLHLKLDREKVERLNVPYANVVEALEVYLGSVFINEFNYLGRTFRVIAQADS 785

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                     L +         V   ++  ++      +         + LQ       + 
Sbjct: 786  EYRHTEDDILRIKVKSNNGDMVPIGSVAQIENTVAPSRMPRFNLYPAIDLQGDVAPGYSS 845

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
               L  ++K     +P         +     + +    ++   +  I + + +  +++ W
Sbjct: 846  DEALVTMEKLAQNNLPDGIGYEWTEI-AYQQKMVGNTALMAFTLGVIFIFLVLAAQYESW 904

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + + +  ++    + G+E N+      L LIG +  + +++ +  R   +L
Sbjct: 905  SLPLAVILIVPMCLFSSMLGVKILGMENNIMTQIGFLVLIGLASKNAILIVEFAR---QL 961

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                 +      ++    L   + TS A  + V P+ +    G  +  +  + +  G++ 
Sbjct: 962  ENRGYNLWKAAIQAAKLRLRPILMTSFAFILGVFPLIISTGAGAEMRRALGVAVFSGMLG 1021

Query: 808  AASSSIFIAAPILLFIYDWRAKNARI 833
                 +       + I        ++
Sbjct: 1022 VTFFGLIFTPLFYVLISRLSRYKRKL 1047



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 69/203 (33%), Gaps = 9/203 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +    + ++ + K     +      N  +   +    +       + +  + +LI++ 
Sbjct: 304 ATAQEIIKTMKTIAKAFPPGITYDIAYNPTLFVQQSIDAVFHTIYEAIALVVLVILIFLQ 363

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  +   +  + + +  T       G   N   +  ++  IG  V+D +VV + M 
Sbjct: 364 ---TWRASAIPVVAIPVSLIGTFAVMQAIGFSLNYLTLFGLVLAIGIVVDDAIVVVENME 420

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
           +N++     ++ RD   K++ E     V   +      LP     G        F   +A
Sbjct: 421 RNIQA---GMNPRDAARKTMTEVGSALVAMGLVLIAVFLPTVFLEGISGRFYQQFGTTLA 477

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
               ++   S+ +   + + +  
Sbjct: 478 VATAISVFVSLTLTPTMAVLLLR 500


>gi|311894860|dbj|BAJ27268.1| putative preprotein translocase SecF subunit [Kitasatospora setae
           KM-6054]
          Length = 373

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 139/310 (44%), Gaps = 14/310 (4%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L    ++  F+  R     IS +  + +   L   GL+ GI+FKGG    V     + 
Sbjct: 8   HRLYQGEVSFDFVGKRKIWYSISAVIVLVAGIGL-AMGLHLGIEFKGGSVYTVHKPG-LS 65

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  +   + +   + +      + +  +++  Q              K+    I     
Sbjct: 66  ASQAKDTADKIIGSNTALAQTTDKGDVRIQVSAQESIPATT-----FTKEFSQAIGVQEQ 120

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
             N +++GP    ++ +K + G+I+  + + IY+ I F+W  A+ A+  LI D+  T+G 
Sbjct: 121 DINAQVIGPSWGADISKKALTGLIVFMVLVTIYMAIAFEWRMAVAALVALIHDLLITIGV 180

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINET 768
           +AL G E     V   LT++GYS+ D VVV+D +++N +  T     ++ +  +  +N+T
Sbjct: 181 YALVGFEVTPGTVIGFLTILGYSLYDTVVVFDTVKENTRGLTKQSRRTYSEAANHGLNQT 240

Query: 769 LGRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           L RS+ T++ A + V  +   GG       +   ++ +  G+   A SSI +A P+L  +
Sbjct: 241 LVRSINTTVVALLPVSALLFIGGGFLGAGTLNDISLALFIGLAAGAYSSICVATPLLAQL 300

Query: 824 YDWRAKNARI 833
            +       +
Sbjct: 301 KEQAPDMKAL 310


>gi|91785071|ref|YP_560277.1| RND efflux hydrophobe/amphiphile efflux-1 family protein
           [Burkholderia xenovorans LB400]
 gi|91689025|gb|ABE32225.1| RND family Hydrophobe/amphiphile efflux pump [Burkholderia
           xenovorans LB400]
          Length = 1069

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 66/575 (11%), Positives = 155/575 (26%), Gaps = 46/575 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIILMLAGIASVF-----TLPIAQYPTIAPPA-------------VQISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   +     +   S     +    ITL+FA     +    +V  
Sbjct: 50  PGASAKTVENTVTQVIEQQMSGLDHLLYLSSTSDDSGTATITLTFAAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++     T      +++     +    +  + +  +     D +   
Sbjct: 110 KLQLATPLLPQAVQQLGTKVTKSSSSFLLVMAFVSEDGSMNKYDLANYVASNIQDPVSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    D ++L     T   +       N    G   G        
Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDANKLTNFGLTPVDVQTALTAQNVQVAGGSLGGTPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        I       
Sbjct: 229 VLQATITEATLL-------------NTPEQFGNVLLKVNPDGSQVRIKDVGRIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L        +             
Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATATAVRAKVAELSKYFPHGLVVQYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++ L+G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMGLVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMQEEGLSPRDATRKAMDQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I+     +   
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIEKGHQEKTTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                   F ++R             S   L  + 
Sbjct: 511 FFGWFNRTFNKSRDKYHSGVHHVIKRSGRWLIIYM 545



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +  +   +                 +++A    +     ++++  
Sbjct: 258 SQVRIKDVGRIELGGENYNFDTKYNGQPTAGFGIQLATGANALATATAVRAKVAELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     L     + + + 
Sbjct: 318 PHGLVVQYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N  ++  ++  IG  V+D +VV + +     +    +S RD   K++
Sbjct: 378 GTFAIMGLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMQEEGLSPRDATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 DQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPAL 492



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 77/221 (34%), Gaps = 8/221 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++    PG S  Q                        +   +   +    
Sbjct: 816  ERYNGISAVEIQGAAAPGKSTGQAMTAMEALVAKLPAGVGYEWTGLSLQERQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YGISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     +  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQSEGMGPVEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                G +   +    +  G++ A   +IF+     + I   
Sbjct: 991  SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 137/520 (26%), Gaps = 28/520 (5%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         L     G +       
Sbjct: 536  RSGRWLIIYMVVIFAVGLLFV------KLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              D  +  L      + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LKDVSDYLLNTEKSIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHSDQKVQALVGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +           L+       I  + +    D  +        E + +  + +    +  
Sbjct: 650  LFMHFGSYKNA-LVYPVNPPSIPELGTAAGFDFELQDRAGVGHEKLMEARNMLLGMAAKD 708

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
              L   R        Q    +     +   +S   +    S       V    D+DG   
Sbjct: 709  PTLAQVRPNGLNDTPQFKVDIDHEKASALGVSLSAIDQTFSIAWASQYVNNFLDTDGRI- 767

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                KV + G              +                   +  +           R
Sbjct: 768  ---KKVYLQGDAPFRMKPEDLNAWY-------VRNGAGNMVPFSSFASGTWTYGSPKLER 817

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +     +   + +G        ++A +            ++ER  G      S 
Sbjct: 818  YNGISAVEIQGAAAPGKSTGQAMTAMEALVAKLPAGVGYEWTGLSLQERQSG------SQ 871

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  I   +V + L  +             + L VI  L   +L G    +    G++
Sbjct: 872  APILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931

Query: 422  LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +GL+  + IL+ E  RE +  +      +           I  +++  ++  + L   
Sbjct: 932  TTVGLSAKNAILIVEFARELQQSEGMGPVEAALEAARLRLRPILMTSLAFILGVMPLAIS 991

Query: 481  ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
               G  +       +   +L + F AI ++    + I   
Sbjct: 992  NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031


>gi|262164935|ref|ZP_06032673.1| protein-export membrane protein SecD [Vibrio mimicus VM223]
 gi|262027315|gb|EEY45982.1| protein-export membrane protein SecD [Vibrio mimicus VM223]
          Length = 612

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 152/512 (29%), Positives = 261/512 (50%), Gaps = 25/512 (4%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            +   S+  ++   +  + I LGLDLRGG   +L VD D           D ++  L+ E
Sbjct: 113 TYSYVSVAPKWLDELGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAE 172

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            +   S++ + N    +F     +    + V  +LQ        +  +   +      + 
Sbjct: 173 RLRGVSVQAVGND---AFDVKTQQPQALNHVRQYLQ--------ENYRGWDIRQGSDHLQ 221

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + 
Sbjct: 222 VQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKN 281

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA ++F++           F    L D +G   ++  +  +SG H+  A A  D  
Sbjct: 282 VIGATASLAFYEAKS--PTDARSFDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNM 339

Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
               V        G            +    V R+         +    + +    Q+  
Sbjct: 340 GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNAHGETVRSERVISVATIQSQL 399

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  GL 
Sbjct: 400 GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLA 459

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432
           + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N+
Sbjct: 460 MTLTFMALWYRRLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 519

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T+
Sbjct: 520 LIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTL 579

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GL +L SMF+ +   RA++  +      + + 
Sbjct: 580 GLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|309703685|emb|CBJ03026.1| acriflavin resistance protein F [Escherichia coli ETEC H10407]
          Length = 1034

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +                    +                      +      
Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNGDEN 641



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V ++  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291

Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T + ++    ++    P               +  I + +  +  + + +
Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +  ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILTPALCATLLK 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPISVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|110598306|ref|ZP_01386581.1| SecF protein [Chlorobium ferrooxidans DSM 13031]
 gi|110340114|gb|EAT58614.1| SecF protein [Chlorobium ferrooxidans DSM 13031]
          Length = 311

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/304 (26%), Positives = 141/304 (46%), Gaps = 11/304 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I       F+  R    G S++     +  L   GLNYGIDF+GG ++ +  ++ +D+
Sbjct: 1   MRIFHKTNFDFIGFRKIAYGFSLILLASGLISLAVKGLNYGIDFRGGSEVLIRFDKNIDV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S VR+ L+   I     Q      +              + + L               I
Sbjct: 61  SAVRAVLDEAGISGSLKQYGL---DRSFLFSTVFSGETNELKSLVSGAFDARLKNNPHEI 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP I+ +L    +  ++ S +A+L+Y+ IRF+  FA   +  +  DI   LG F
Sbjct: 118 VRIDAVGPSIASDLKWSALKALLASLVAILLYVGIRFEIKFATAGVIAIFHDILSVLGLF 177

Query: 712 A-------LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           +          +E + + +AA LT+ GYS+ D VVVYDR+R+ ++       +  + ++S
Sbjct: 178 SLLGGLFDFMPLEMDQSIIAAFLTIAGYSITDTVVVYDRIRERIR-GQKPADYERIFNES 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +N+TL R++ TS    +SV  + ++ G  I  FA  +  GI++   SSIF+AAP++    
Sbjct: 237 MNQTLSRTIITSGTVLLSVFVLFIFAGPAIRGFAFAVFCGILIGTYSSIFVAAPLVFDWL 296

Query: 825 DWRA 828
               
Sbjct: 297 RLSK 300


>gi|126175450|ref|YP_001051599.1| preprotein translocase subunit SecD [Shewanella baltica OS155]
 gi|125998655|gb|ABN62730.1| protein-export membrane protein SecD [Shewanella baltica OS155]
          Length = 604

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 165/527 (31%), Positives = 274/527 (51%), Gaps = 34/527 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  ++  P  L  S+    PS +       I LGLDLRGG   +L+VD D       +
Sbjct: 94  TLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGE 153

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
              D LR F++++ I   S+   Q N++ L+  D+  +  +   +               
Sbjct: 154 ALVDSLRQFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQ------- 206

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
               L  T    + I LSQ    ++ +  ++Q+++++R RI+++GI+E+ +QR G HRI 
Sbjct: 207 ----LSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGDHRIR 262

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           I+LPG QDP+  + ++G TA ++F +V               L D  G    V     + 
Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLNDKSGKPIYVSRTPVLG 317

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---- 306
           G H+  A A+         V+I+ D +G ++  E +R NIGKP+A               
Sbjct: 318 GDHIVDARASLGEMGM-AEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDEQGKAK 376

Query: 307 --------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                      Q+    + +I+G  T + A  LA +LRAGS+   + IVEER +G  LG+
Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
           ++I  G  A+  G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A LTLP I
Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG+VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STIFD+N T +I  VVL
Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +  G G ++GFA+T+GL +L SMFT I   RA++  +      + + 
Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603



 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 91/260 (35%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    + +          +    ++ L       G    Q
Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDEQGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I  G   + +     L+++ + ++  
Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID   +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  ++  +Y   A  
Sbjct: 581 TGIFASRALINLVYGRDASR 600


>gi|325928043|ref|ZP_08189256.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
 gi|325541541|gb|EGD13070.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
          Length = 1086

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 68/685 (9%), Positives = 172/685 (25%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++PS  P                      
Sbjct: 8   RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPAVA---------IAANYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    L        +        ITL+F +    +    +V   L  
Sbjct: 54  AQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQNKLSL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      + +     +       + S  +     + I   E   
Sbjct: 114 ATPLLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G      +     
Sbjct: 174 DTTLFGSQ-YAMRVWMDPNKLSNFSLTPVDVRNAIQAQNAQISAGQLGALPAVANQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +   +    +        I           
Sbjct: 233 TITAQTRL-------------KTAEQFENILLRTQSDGSQVRLGDVARIELGSESYNTVG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T+               P                S   
Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRISIEQ 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++  +V
Sbjct: 340 VVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     + Q S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEQLSPKDATRKSMDQISGALIGVALVLAAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------IDINP 527
            G      R F+IT+  ++ +S+  A+ +  A+   +++                 +   
Sbjct: 460 SGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVHKGHGLATTGFFGWFNRLF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     +   + +  + L ++     +         + +G + + V    
Sbjct: 520 DRGNTGYQGVVRHMLGKGWRYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLVQLPP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     L+ ++   +  Q       F V      G           ++        
Sbjct: 580 GATNARTSEVLKQVEHHFLVDQKDSVAGVFAVTGFSFAGSGQNVGFAFVKLRPWDERTGK 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
             ++ +           +    +  
Sbjct: 640 GQSVTDVAARAGAFFAGIRDAKVFA 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 89/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++   R ++   ++  +  
Sbjct: 258 SQVRLGDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   + A++  IG  V+D +VV + +     +    +S +D   KS+
Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEQLSPKDATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  +  ++      +PMA + GS       F+I +   + ++   ++ +   +   
Sbjct: 436 DQISGALIGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 68/225 (30%), Gaps = 7/225 (3%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                        +   A   V  +   +         +   N       L         
Sbjct: 776 PYRMNPQDIDHWFVRNSAGTMVPFNAFATASWQSGSPRLERYNSVPSMEILGMALPGAAS 835

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S    +++E    K+   +          +  +      + G++  +   I  L    + 
Sbjct: 836 SGEAMQIVEAAAAKLPPGIGF----EWTGLSRQEKASSGQTGLLYSVSILIVFLCLAALY 891

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W      I  + L +  TL    L     ++     +LT IG +  + +++ +  R+ 
Sbjct: 892 ESWAIPFSVILVVPLGVFGTLLAAMLTWKMNDVYFQVGLLTTIGLASKNAILIVEFARE- 950

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             L+    S      ++    L   + TS+A  + V+P+ +  G+
Sbjct: 951 --LHEGGKSLVAAALEAARMRLRPILMTSLAFILGVVPLVLTSGA 993


>gi|260425392|ref|ZP_05779372.1| AcrB protein [Citreicella sp. SE45]
 gi|260423332|gb|EEX16582.1| AcrB protein [Citreicella sp. SE45]
          Length = 1045

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 72/585 (12%), Positives = 156/585 (26%), Gaps = 41/585 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +GLL  L        + ++P   P               + +    
Sbjct: 8   RPVFAWVISILIMGVGLLSIL-----SLPVAQYPEIAPP-------------SVRVSAQY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGASAETVANTVTQIIEQQMTGLDGMRYMSSSSTSAGTASITLTFESGTDPDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L    + L    ++  +          ++     +       + S  +    +D+    
Sbjct: 110 KLSQATALLPETVQRQGVTVEKSSSSFFMVIGLISEDGTLEQADLSDYLNSNLVDEFSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +     PS+L     T A +       N       FG     D  
Sbjct: 170 EGVGGAQVFGAQ-YAMRIWLHPSKLAAFEMTPADVVSAVSAQNAQISAGAFGTLPAPDGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +S                     +   E            ++       
Sbjct: 229 QLNATITAQSLLS-------------TPEDFRNIVLRAETDGGLVLLQDVADVEIGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E                   ++          
Sbjct: 276 STIARYNGQPASGMALQLASGANALDTSERVKARIEEFSEFFPEGVNYVIPYDTTPFIAI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV  V+ + +   +  L+   ++ + ++ T  +L+L G T+   ++
Sbjct: 336 SIHEVQKTLIEAIVLVFFVMLLFLQNFRATLIPTLAVPVVILGTFGVLALAGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERIMEEEGLSPREATRKSMGQITGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R F+IT+  ++ +S+  A+++  A+   +++ K        P   F  
Sbjct: 456 MAFFPGSTGVIYRQFSITIVSAMALSVLVAMTLTPALCATLLKSKDAHHTKRGPAGWFNK 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
             D     +     W +       I    L +     +     G 
Sbjct: 516 GFDKTTDGYAGTVGWLIRRPFRVLILYAALGYGMVFLFNNTPTGF 560



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/437 (11%), Positives = 124/437 (28%), Gaps = 27/437 (6%)

Query: 416  SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            S+ G+V         N+ +     ++  +  S   S+     RA+          +   V
Sbjct: 605  SVFGVVGFSFAGQGQNMGLAFVRMKDWDERPSPAQSVQAVAGRAFPAFMGIQDAMVFPIV 664

Query: 476  VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                   G V GF   +      +    +     ++    +   + S+  N L       
Sbjct: 665  PPSVIELGNVSGFDFYLQAQAGQTHEQLLEARNQLLGMAAQSPILGSVRPNGLEDASQFN 724

Query: 536  DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ--------------- 580
              I  +   A              +    + +  N     K                   
Sbjct: 725  LDIDWRAAGAIGVSPTNVGNLLSVAWAGSYVNDFNDNGRIKRVYVQGSPESRATPSDLQK 784

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              V  +    +       ES   G      ++G     ++     G S  +         
Sbjct: 785  WRVRNSNGDLVPFANFTSESWTYGPQGLTRYNGVPAMQIQGSPAEGVSTGEAMAEIERIA 844

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                           +           +  +   +S  A+ + +   ++ W   L  +  
Sbjct: 845  SQLPPGYSVAWTGLSLEERDSGG----QAPLLYALSLAAIFLCLAALYESWTIPLSVMLA 900

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + + +  T+G    FG +  +     +LT+IG +  + +++ +  R+    +        
Sbjct: 901  MPIGVLGTMGAAYWFGFDNGVFFQVGLLTVIGLTGKNAILIVEFARE---RFEAGEEILT 957

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA-SSSIFI 815
             + ++  +     + TS+A  + V+P+ +    G     +    +  G +       IF+
Sbjct: 958  AVKEAARQRFRPIIMTSLAFTLGVVPLVLSSGAGAGGRNAVGSAVLGGTITGTVLGVIFV 1017

Query: 816  AAPILLFIYDWRAKNAR 832
                ++ +  +  K  R
Sbjct: 1018 PLFFVVVMRIFGRKQIR 1034



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 83/228 (36%), Gaps = 14/228 (6%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            + Q   G    L         S      +E   +   E V      +T         E+
Sbjct: 281 YNGQPASGMALQLASGANALDTSERVKARIEEFSEFFPEGVNYVIPYDTTPFIAISIHEV 340

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            +  I  +++    ML+++     +   L     + + I  T G  AL G   N   + A
Sbjct: 341 QKTLIEAIVLVFFVMLLFLQ---NFRATLIPTLAVPVVILGTFGVLALAGFTINTLTMLA 397

Query: 726 VLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           ++  IG  V+D +VV    +R+ +        +S R+   KS+ +  G  V  ++     
Sbjct: 398 MVLAIGLLVDDAIVVVENVERIMEE-----EGLSPREATRKSMGQITGALVGIALVLSAV 452

Query: 783 VLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +PMA + GS       F+I +   + ++   ++ +   +   +   +
Sbjct: 453 FVPMAFFPGSTGVIYRQFSITIVSAMALSVLVAMTLTPALCATLLKSK 500


>gi|256158996|ref|ZP_05456833.1| Acriflavin resistance protein [Brucella ceti M490/95/1]
 gi|256254354|ref|ZP_05459890.1| Acriflavin resistance protein [Brucella ceti B1/94]
 gi|261221514|ref|ZP_05935795.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti B1/94]
 gi|265997477|ref|ZP_06110034.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M490/95/1]
 gi|260920098|gb|EEX86751.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti B1/94]
 gi|262551945|gb|EEZ07935.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M490/95/1]
          Length = 1051

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/565 (12%), Positives = 158/565 (27%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + + I   T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGIMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEKVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 80/212 (37%), Gaps = 6/212 (2%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +        +++    +++    ++    P            K  +  I K + 
Sbjct: 285 GTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEKVVH 344

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             I + I +++ ++I  + W   L  +  + + I  T     + G   NL  +  ++  I
Sbjct: 345 TFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAI 404

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +VV + +     + T  +S R    K++ E  G  +   +      +P+A  G
Sbjct: 405 GIVVDDAIVVLENV--ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              G +   FA+ +A  + ++   ++ +   +
Sbjct: 463 GLVGEMYKQFAVTIAISVTLSGLVALTLTPAL 494



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|256112817|ref|ZP_05453738.1| transporter, hydrophobe/amphiphile efflux-1, HAE1 family protein
           [Brucella melitensis bv. 3 str. Ether]
 gi|265994259|ref|ZP_06106816.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           bv. 3 str. Ether]
 gi|262765372|gb|EEZ11161.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           bv. 3 str. Ether]
          Length = 1051

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 71/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P RL Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDRLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 82/266 (30%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+   + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLTFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 63/540 (11%), Positives = 140/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFADS---RFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKECTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++T ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLTFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|154250987|ref|YP_001411811.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154154937|gb|ABS62154.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Parvibaculum lavamentivorans DS-1]
          Length = 1044

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 69/690 (10%), Positives = 183/690 (26%), Gaps = 50/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L  +     Q  ++++P   P               + +    
Sbjct: 8   RPVFAWVVAIAIMLAGTLSIM-----QLPIEQYPPIAPA-------------SVTVTGTY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       +TL+F      +    +V  
Sbjct: 50  PGASARTVENTVTQVIEQKMNGIDYLRYMSSTSDSSGTGTVTLTFEPEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++          +  E +  +     D I   
Sbjct: 110 KLQSALPLLPQEVQQQGVTVAKSARNFLMVIAFISTDGRINETEIADYVASHIQDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L+    + + ++      N        G R   +  
Sbjct: 170 NGVGEIQLFGPQ-HAMRIWIDPQKLQSYRISISDITTAIRAQNAEVSAGQLGARPAVEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    +        +        +       
Sbjct: 229 QLNATVTAQTRL-------------ETPAQFENILLRVNEDGSQVRLKEVARVELGSENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E      A L          ++          
Sbjct: 276 QTIGRYNGNPASGIAVRLASGANALDTAEAVRTKIAELEPFFPEGLEVVIPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T A    LV++V+++ +   +   +   ++ + ++ T  +L+  G T+   ++
Sbjct: 336 SINEVIKTLAEAIVLVILVMYLFLQNIRATFIPAIAVPVVLLGTFGILAAFGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQITGALVGIGLVLSAVLIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           + FF G      R F++T+  ++++S+  A+ +  A+   +          +       +
Sbjct: 456 MAFFAGSTGAIYRQFSLTIVSAMVLSVIVALVLTPALCATLLKPVKNHGEEKRGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        +         + V   ++  I     L         + +G +   V 
Sbjct: 516 RMFDRSGRSYDVGVRRFLAGPVRYMVVYGVIVVILGALFLRLPTSFLPDEDQGFMMTLVT 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                       +++ ++   +  +    +  F V      G           +K     
Sbjct: 576 TPAGASAERTLESMKLVENYFLEQEKDSAQGLFSVVGFNFAGAGQNSAMAFINLKPFDER 635

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               ++  +           +       +I
Sbjct: 636 GTDETSAFSVAQRAMGFFGAMKDAMAFAII 665



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 83/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +      + +        +++     +     ++    
Sbjct: 258 SQVRLKEVARVELGSENYQTIGRYNGNPASGIAVRLASGANALDTAEAVRTKIAELEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I + I  +  + + +++ +++  +           + + + 
Sbjct: 318 PEGLEVVIPYDTTPFVRLSINEVIKTLAEAIVLVILVMYLFLQNIRATFIPAIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V   +     ++PMA + GS       F++ +   +V++   ++ +   +   
Sbjct: 436 GQITGALVGIGLVLSAVLIPMAFFAGSTGAIYRQFSLTIVSAMVLSVIVALVLTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 70/208 (33%), Gaps = 9/208 (4%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + F+G  +  ++    PG S                               +   +    
Sbjct: 814  ERFNGSSSRQIQGSAAPGVSSGDAMAEMERLMAQLPEGVGYEWTGLSYEERQAGAQAPSL 873

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + ++   + +     +   W   +  +  + L +   +    + G+  ++     +L 
Sbjct: 874  YALSLLFVFLCLA---ALYESWSIPVSVMLVVPLGVLGAVLAATMTGLSNDVYFQVGLLV 930

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             IG +  + +++ +  +    LY    S  D   ++    L   + TS+A  + VLP+A+
Sbjct: 931  TIGLAAKNAILIVEFAK---SLYERGESLADATIQAARLRLRPIIMTSLAFTLGVLPLAI 987

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSI 813
                G     +  I +  G++ A   +I
Sbjct: 988  ASGPGSGSQNAIGIGVMGGMISATVLAI 1015


>gi|281424589|ref|ZP_06255502.1| multidrug efflux RND transporter MexF [Prevotella oris F0302]
 gi|281401260|gb|EFB32091.1| multidrug efflux RND transporter MexF [Prevotella oris F0302]
          Length = 1062

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 68/535 (12%), Positives = 157/535 (29%), Gaps = 40/535 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  IG+L           + +FPS  P              ++V   D
Sbjct: 7   RRPVLAIVVSLVIVFIGILSLF-----NLPITQFPSISPPK-----------VNVV--AD 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N  + +     L   L    G+         +   +I + F         A  V 
Sbjct: 49  YPGANNELMIKSVLIPLEQALNGVPGMKYIESDAGNDGEGEINIVFKLGTDPNVDAINVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL     +  +  + E+   ++      D                   ++  
Sbjct: 109 NRVSAATNKLPPAVVREGVKISREEPNILMYINLYSDDPKVDQNFLFNYADINISPELAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P +L     + + ++      +        G    + +
Sbjct: 169 VDGVGDLDILGTRSFAMRVWLKPDKLTAYGLSASDITDALQQQSIEASPGKLGESSGKHA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++     +                +    +       +        ++     V
Sbjct: 229 QSFEYVLKYPGRYT-------------TPEEYSNIVVKSTPDGQFVRLKDVADVSLGSEV 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +    I+      A L+          +         
Sbjct: 276 YDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDMPKGMHYELSYDISRFLD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV  V+F+ +   +  L+   ++ +++I + A+++  G TL + S
Sbjct: 336 ASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLIGSFAVMNAFGITLNMIS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +V+ IG+ VD  I+V E +  +  ++      +           I    +      +
Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVKIAQEGLEPLEATQKAMKEISGAIVAVTLVMASVFI 455

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            + F G   G   R F+IT+   I++S FTA+++  ++   I+  ++   I    
Sbjct: 456 PVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCALILTRERDNHIKKTW 510



 Score = 95.1 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V L  V       ++ DI           +   Q    ++    + ++     + + +
Sbjct: 259 QFVRLKDVADVSLGSEVYDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDM 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDIT 705
           P            +     I K I  +  + I +  +       W  AL     + + + 
Sbjct: 319 PKGMHYELSYDISRFLDASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLI 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            +      FGI  N+ ++ A++  IG  V+D +VV + +  N+K+    +   +   K++
Sbjct: 379 GSFAVMNAFGITLNMISLFALVMAIGIVVDDAIVVIEAV--NVKIAQEGLEPLEATQKAM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  V  ++      +P+A  GG        F+I +A GIV++  +++ +   +   
Sbjct: 437 KEISGAIVAVTLVMASVFIPVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCAL 496

Query: 823 IYDWRAKN 830
           I      N
Sbjct: 497 ILTRERDN 504



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 10/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V  +       +  +               +    +   S A         K I E+  
Sbjct: 789  NVKNNQDEMVPYADFLHMEKVYGMSEMTRHNLYNSAEVTGSAAAGYSSGQAIKAIEEVAA 848

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRFK---WYFALGAITTLILD 703
             +     +     I+++ + +G   +II  +    +Y+ +  +   +   L  IT L   
Sbjct: 849  STLPHGYDYDFAGITKDEVDQGNQALIIFIVCLTFVYLILSAQYENFLLPLPIITCLPAG 908

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I  T  F  L G+E N+ A  A++ LIG    + V++ +     ++ +    S R    +
Sbjct: 909  ICGTFIFLKLTGLENNIYAQVAMVMLIGLLGKNAVLMVE---YAVQRHNLGKSIRAAAIE 965

Query: 764  SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    +LP+    G   I   +     A G++      + +   + 
Sbjct: 966  GAAARFRPILMTSFAFIAGLLPLVFAHGAGAIGNRTIGTAAAGGMLFGTCFGLILVPGLY 1025

Query: 821  LFIYD 825
                 
Sbjct: 1026 YIFGR 1030


>gi|54298073|ref|YP_124442.1| hypothetical protein lpp2130 [Legionella pneumophila str. Paris]
 gi|53751858|emb|CAH13282.1| hypothetical protein lpp2130 [Legionella pneumophila str. Paris]
          Length = 1050

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/582 (12%), Positives = 170/582 (29%), Gaps = 40/582 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P  +P               + ++   
Sbjct: 10  RPVFATVISIIIVMVGVLS-----YFNLPIEQYPQVVPPT-------------IQVQASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   E +     +   +   ++T++F      +     V  
Sbjct: 52  PGANAKTVAETVATPIEQEVNGVENMLYMDSQSTDDGQMRLTITFKLGTDLDQAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  KL  + ++  + T       +++                   I    D+I   
Sbjct: 112 RVAVVEPKLPEEVRRLGITTNKNSPDLMLVVNLYSPNGQYDQTYIGNYAILHIRDKIRRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     L        +    +P  +     T   +       N         ++  ++  
Sbjct: 172 EGVGNVLVFGASEYAMRIWLNPDLMNTFNLTANDVLAAVRAQNVQVASGKLNLQPQKNQY 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G +Y +E K  +              K  +    I     G R         +       
Sbjct: 232 GFEYHIETKGRL-------------VKKEEFENIIVKSGEGGRIVRLKDIGRVELGTQNY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T +        +     P     +          
Sbjct: 279 LTKGYLDKYPAVALPIYQRPGTNALATAQEIIKTMKTIAKDFPPGITYEIAYNPTLFVQQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   +I +++I T A++  +G +L   ++
Sbjct: 339 SIDAVFHTIYEAIALVVLVILIFLQTWRASVIPVVAIPVSLIGTFAIMQAIGFSLNYLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +    +   +   +     +   S +    +  +   +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERNIQAGMNPRDAARKTMTEVGSALVAMGLVLIAVFLPT 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + F  T+ ++  IS+F ++++   M + +      ++I    L+ +   
Sbjct: 459 VFLEGISGRFYQQFGTTLAVATAISVFVSLTLTPTMAVLL-LRAHHETIKQEGLAWWKKP 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                  F R                        + YGI   
Sbjct: 518 IYGFLHGFNRLMEGFSRQYGKLVATLTRKTALMIIAYGIFIS 559



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/446 (10%), Positives = 128/446 (28%), Gaps = 19/446 (4%)

Query: 402  LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
            +  +  +  T++    +G          +         E  R   +    +     +  S
Sbjct: 607  ILAIPGIAHTVSFTGFSGATFTNSSNAGAIFTPLLSFEERQRMGINYND-ILKRLRQELS 665

Query: 462  TIFDSNITAL-------IATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMM 511
            TI ++ I  +       I     F        G  + + +    +M  A +      ++ 
Sbjct: 666  TIKEALIVVIPPPPVRGIGNAGGFKMMLQDRGGRGLDVLMEAAATMVNAANQEKATTSVF 725

Query: 512  IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
             F         + ++      L      +      + G      F+            + 
Sbjct: 726  TFFENSTPRLHLKLDREKVERLNVPYANVVEALEVYLGSVFINEFNYLGRTFRVIAQADS 785

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                     L +         V   ++  ++      +         + LQ       + 
Sbjct: 786  EYRHTEDDILRIKVKSNNGDMVPIGSVAQIENTVAPSRMPRFNLYPAIDLQGDVAPGYSS 845

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
               L  ++K     +P         +     + +    ++   +  I + + +  +++ W
Sbjct: 846  DEALATMEKLAQNNLPDGIGYEWTEI-AYQQKMVGNTALMAFTLGVIFIFLVLAAQYESW 904

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + + +  ++    + G+E N+      L LIG +  + +++ +  R   +L
Sbjct: 905  SLPLAVILIVPMCLFSSMLGVKILGMENNIMTQIGFLVLIGLASKNAILIVEFAR---QL 961

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 +      ++    L   + TS A  + V P+ +    G  +  +  + +  G++ 
Sbjct: 962  ENRGYNLWKAAIQAAKLRLRPILMTSFAFILGVFPLIIATGAGAEMRRALGVAVFSGMLG 1021

Query: 808  AASSSIFIAAPILLFIYDWRAKNARI 833
                 +       + I        ++
Sbjct: 1022 VTFFGLIFTPLFYVLISRLSRYKRKL 1047



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 70/203 (34%), Gaps = 9/203 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +    + ++ + K     +      N  +   +    +       + +  + +LI++ 
Sbjct: 304 ATAQEIIKTMKTIAKDFPPGITYEIAYNPTLFVQQSIDAVFHTIYEAIALVVLVILIFLQ 363

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  ++  +  + + +  T       G   N   +  ++  IG  V+D +VV + M 
Sbjct: 364 ---TWRASVIPVVAIPVSLIGTFAIMQAIGFSLNYLTLFGLVLAIGIVVDDAIVVVENME 420

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
           +N++     ++ RD   K++ E     V   +      LP     G        F   +A
Sbjct: 421 RNIQA---GMNPRDAARKTMTEVGSALVAMGLVLIAVFLPTVFLEGISGRFYQQFGTTLA 477

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
               ++   S+ +   + + +  
Sbjct: 478 VATAISVFVSLTLTPTMAVLLLR 500


>gi|262403744|ref|ZP_06080302.1| protein-export membrane protein SecD [Vibrio sp. RC586]
 gi|262350248|gb|EEY99383.1| protein-export membrane protein SecD [Vibrio sp. RC586]
          Length = 612

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 148/512 (28%), Positives = 260/512 (50%), Gaps = 25/512 (4%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            +   S+  ++   +  + I LGLDLRGG   +L VD D           D ++  L+ E
Sbjct: 113 TYSYVSVAPKWLDNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMIDAVKDSLRAE 172

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            +   +++ + N    +F     +    + V  +LQ        +  +   +      + 
Sbjct: 173 RLRGVTVQAVGND---AFEVKTDQTKALNHVRQYLQ--------ENYRGWDIRQGSDNLQ 221

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + 
Sbjct: 222 VQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKN 281

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA ++F++           F    L D +G   ++  +  +SG H+  A A  D  
Sbjct: 282 VIGATASLAFYEAKS--PTDARSFDDLILEDENGRPVVLAKRPVLSGEHIVNARAGVDNM 339

Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
               V        G            +    V R+         +    + +    Q+  
Sbjct: 340 GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQL 399

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             + +I+G  ++E A  LA +LRAGSL   + IVEER +GA L  ++I  G  A+  G+ 
Sbjct: 400 GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLSEENIANGFAALALGMA 459

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432
           + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N+
Sbjct: 460 MTLTFMALWYRRLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 519

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+ ERIR++  + ++   ++D GF  A+STI D+N+T +I  V+L+  G G ++GFA+T+
Sbjct: 520 LIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANVTTMITAVILYSIGNGPIQGFALTL 579

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GL +L SMF+ +   RA++  +      + + 
Sbjct: 580 GLGLLTSMFSGVLASRALINLVWGRDTRRDVR 611



 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +S E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLSEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANVTTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +  +  ++  ++    + 
Sbjct: 586 SMFSGVLASRALINLVWGRDTRR 608


>gi|302346846|ref|YP_003815144.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella melaninogenica ATCC 25845]
 gi|302150515|gb|ADK96776.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella melaninogenica ATCC 25845]
          Length = 1066

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 77/593 (12%), Positives = 172/593 (29%), Gaps = 45/593 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  IG+L      L    + +FPS  P              +++   +
Sbjct: 7   RRPVLSIVVSLVIAFIGILS-----LSNLPITQFPSISPPK-----------VNVI--AN 48

Query: 62  EDDFVNGF-LQMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N   ++     L   L    G+         +   ++ + F         A  V 
Sbjct: 49  YPGANNELLVKSVIIPLEQALNGIPGMKYIESNAGNDGEAELNVVFKLGTDPNVDAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL  +  +  +  + E+   ++      D                   ++  
Sbjct: 109 NRVSSATNKLPAEVIREGVKISREEPNILMYINLYSDDPKVDQGFLYNYFDINISPELLR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P ++     +T  +S      N        G    +  
Sbjct: 169 VDGVGDLDILGTRNYAMRVWLHPDKMIAYGLSTDDVSDALEDQNIEVSPGKLGESGGQRP 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++     +                +    I                ++     V
Sbjct: 229 QVKEYVLKYPGRYTTED-------------EYKNIIIKSNKDGNIVRLKDIADVHLGSEV 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +    I       A L+          +         
Sbjct: 276 YDIYSTFNGRPSAAVTLKQAYGSNARNVITKVKDAMAHLQKDMPKGMHYEISYDVSRFLD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+F+ +   +  ++   ++ ++++ +   + L   TL + S
Sbjct: 336 ASIEKVIHTLFEAFILVAIVVFIFLGDWRASIIPIMAVPISLLGSFIAMMLFNITLNMIS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +V+ IG+ VD  I+V E +  E  +N+ S   + +         I   ++      +
Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVEISRNKLSPVEATEKAMKEISGAIIAISLVMASVFI 455

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F G   G   R F+ITM  SIL S F A+++  A+   I+  ++   + +  + R  
Sbjct: 456 PVAFMGGPEGMFYRQFSITMASSILFSGFVALTLTPALCALILTKEQENHVKLGFIGRVL 515

Query: 533 LIPDCIAIQFMRARFWGVG-----ISILFSICSICLLFTHGLNYGIDFKGGIQ 580
              +       R     +       S+   +  +     + +N G+      Q
Sbjct: 516 QRFNAKFDSGSRKYERLIQHTVKKKSLTIILILVFCGLAYWINMGLPSGFIPQ 568



 Score = 97.1 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/274 (15%), Positives = 104/274 (37%), Gaps = 10/274 (3%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                        + + +N+  ++  ++   +     ++              +  +   
Sbjct: 237 YPGRYTTEDEYKNIIIKSNKDGNIVRLKDIADVHLGSEVYDIYSTFNGRPSAAVTLKQAY 296

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYI 684
                 V+  VK  +  +           +   +SR L   I K I  +  + I + I +
Sbjct: 297 GSNARNVITKVKDAMAHLQKDMPKGMHYEISYDVSRFLDASIEKVIHTLFEAFILVAIVV 356

Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +I    W  ++  I  + + +  +     LF I  N+ ++ A++  IG  V+D +VV + 
Sbjct: 357 FIFLGDWRASIIPIMAVPISLLGSFIAMMLFNITLNMISLFALVMAIGIVVDDAIVVIEA 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIP 800
           +  N+++    +S  +  +K++ E  G  +  S+      +P+A  GG        F+I 
Sbjct: 417 V--NVEISRNKLSPVEATEKAMKEISGAIIAISLVMASVFIPVAFMGGPEGMFYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
           MA  I+ +   ++ +   +  L +   +  + ++
Sbjct: 475 MASSILFSGFVALTLTPALCALILTKEQENHVKL 508



 Score = 45.1 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 74/224 (33%), Gaps = 12/224 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + V  S   S  ++  + +I+  N                   A   + E+ ++ + +  
Sbjct: 796  QMVPYSDFMSLSKTYGMSEITRHNLYNSSEVTGAQAPGYSSGQALQAIQEVAQRSLPK-G 854

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                         +         IV  ++  + + + +  +++ +   L  I  L + I 
Sbjct: 855  YDYDWAGISKDEAEQGN----TAIVIFVVCLVFVYLILAAQYENFLLPLPVIIFLPVGIF 910

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                F  + G+E N+ A  A++ LIG    + V++ +     ++              + 
Sbjct: 911  GAFLFLKVCGLENNIYAQIALVMLIGLLGKNAVLMVE---YAVQRKNAGERISQAAISAA 967

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIV 806
                   + TS+A    ++P+    G   I   +       G+V
Sbjct: 968  IARFRPILMTSIAFIAGLIPLVFASGAGAIGNRTIGTAAVGGMV 1011


>gi|237752081|ref|ZP_04582561.1| preprotein translocase subunit SecF [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229376648|gb|EEO26739.1| preprotein translocase subunit SecF [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 323

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 161/294 (54%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                      F++   +G+ +S++  + S+ L    G   G+DF GG  + V  ++P  
Sbjct: 1   MDFFKHNRIYDFVKMSSYGIVLSLILFVGSLILFVKPGFTLGVDFAGGTIIQVQYDKPAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +R  LE++   +    +  G    ++        SV Q    E+    I +     +
Sbjct: 61  LAEIRKTLEAVDAYNGVQVSEFGSPEEILIKLPTASSSVNQDIGQEV--ANILKNTGNLS 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  +IVGPK+  EL  KG + ++++  ++++Y+  R++W FAL AI  L+ DI    G 
Sbjct: 119 VRRVDIVGPKVGNELKEKGALALVLALASIMLYVSYRYEWRFALAAILALVHDIVIATGA 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF I+ +L  +AA+LTLIGYS+ND ++++DR+R+ + +     S  ++++++++ TL 
Sbjct: 179 VILFDIDLSLEVIAALLTLIGYSINDTIIIFDRIRETIGIRVN-DSLENVVNEALSATLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R+V TS+  F +V  +  +GG +I  F++PM  G +V + SSIF+A+ +++   
Sbjct: 238 RTVLTSLTVFFTVFTLYAFGGEIIKGFSLPMLVGSIVGSYSSIFVASKLVILFK 291


>gi|194365395|ref|YP_002028005.1| preprotein translocase subunit SecD [Stenotrophomonas maltophilia
           R551-3]
 gi|194348199|gb|ACF51322.1| protein-export membrane protein SecD [Stenotrophomonas maltophilia
           R551-3]
          Length = 618

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 159/519 (30%), Positives = 272/519 (52%), Gaps = 37/519 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDL+GG H VL+VD+   ++  L  Y++++RS L+   I
Sbjct: 103 NLASTVPDWLANLGGRPMVLGLDLQGGVHFVLQVDQKAALDKRLDAYTEDVRSTLRDARI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I  + + S   +         ++          +  L    +   I++
Sbjct: 163 PYQSVERRADNSIVANLSPSAGDDAAQRARAALVK---------AQPTLGYDVSGNRITV 213

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  I Q+ + AIEQ++  +R R++Q+G++E  IQR G+ R+++QLPG QD +  +++
Sbjct: 214 TVPETEITQIANGAIEQNINTLRNRVNQLGVAEPIIQRQGADRVVVQLPGVQDTAEAKRM 273

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + +  V+  N++     G                  L+  +V ++G  + GA A
Sbjct: 274 IGATATLEYRAVVEGNAQDAITAGRIPPEAKVYQQRDGRGPILLNKRVIVTGDQMVGAQA 333

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
             D  +  P V ++ + +G +R F+ T  N+ KP+AVV   RV T  V++     G    
Sbjct: 334 VTDSNSGSPAVSVTLNNVGGQRMFDFTSANVNKPMAVVYTERVPTVTVVDGQEVRGFKVN 393

Query: 320 SGNFTIE------------------TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               ++                    A  LA +L++GSL   ++ VEER VG  LG++++
Sbjct: 394 EEVISVANINGVFGKNFQTTGLQKKEAEDLAKLLKSGSLAAPMDFVEERVVGPSLGAENV 453

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G  A+V   +  ++F  V Y  +G++   ++  N+++ +A++SL GAT+TLP  AG+ 
Sbjct: 454 KNGMRAVVFAFLFTLVFFSVYYRMFGVITSIAMLFNLLIVVAVMSLFGATMTLPGFAGLA 513

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL+VD+N+L+NERIREE R       ++  G+ RA  TI D+N+T LI  V LF FG
Sbjct: 514 LSVGLSVDANVLINERIREELRAGVPGKTAIVTGYERASGTILDANLTGLIVGVALFAFG 573

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            G ++GFA+TM + I  SMFTAI++ RA+   I   +K 
Sbjct: 574 TGPLKGFALTMIIGIFASMFTAITVSRALATLIYGRRKK 612



 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 91/254 (35%), Gaps = 4/254 (1%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + V+    V    V    E                N +    +Q      +    
Sbjct: 363 NVNKPMAVVYTERVPTVTVVDGQEVRGFKVNEEVISVANINGVFGKNFQTTGLQKKEAED 422

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
                K   +          +VGP +  E ++ G+  V+ + +  L++  + ++  F + 
Sbjct: 423 LAKLLKSGSLAAPMDFVEERVVGPSLGAENVKNGMRAVVFAFLFTLVFFSVYYRM-FGVI 481

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
               ++ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+ ++      
Sbjct: 482 TSIAMLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRAGVPGK 541

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           +    I        G  +  ++   I  + +  +G   +  FA+ M  GI  +  ++I +
Sbjct: 542 T---AIVTGYERASGTILDANLTGLIVGVALFAFGTGPLKGFALTMIIGIFASMFTAITV 598

Query: 816 AAPILLFIYDWRAK 829
           +  +   IY  R K
Sbjct: 599 SRALATLIYGRRKK 612



 Score = 42.4 bits (97), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 39/119 (32%), Gaps = 26/119 (21%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W  ++  ++  +  L ALPN   +    +  +             RGG     ++
Sbjct: 2   LEFPRWKYVVILIVLALSALYALPNIYQKDPAIQITAN------------RGG-----QI 44

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           D             D + + LKK G+      +    + +   D + +   +D +   +
Sbjct: 45  D---------DALRDRVLADLKKAGVDAVGAEKEGESLIVRLPDLKAQSAASDALRDTV 94


>gi|269792826|ref|YP_003317730.1| protein-export membrane protein SecF [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100461|gb|ACZ19448.1| protein-export membrane protein SecF [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 291

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 89/289 (30%), Positives = 146/289 (50%), Gaps = 8/289 (2%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I FMR R   + IS +  + S+ L+ T GLN G+D+ GG+ + +   R   +  +RS +
Sbjct: 8   NIPFMRYRRVALAISAVAVVLSLLLVLTRGLNLGVDYTGGVLMHLELPREAQVGDIRSVV 67

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                G+   Q +      L                 + V   + E      +   E VG
Sbjct: 68  SPRVSGEPIIQAYGPRDFMLRL-------KSPSEAERKAVLSVLRERFGDVKVLKLETVG 120

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P +  EL  + +V + ++ + +L+Y+  RF++ F + A+ +L+ D    LG ++L G E 
Sbjct: 121 PVVGAELKSEAMVALALALLGILLYMAFRFQFRFGVAAVLSLVHDAAIMLGVYSLTGREV 180

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           +++ +AAVLT++GYS+ND +VV DR+R+N +          ++D SIN+TL R++ TS+ 
Sbjct: 181 SVSFIAAVLTVVGYSLNDSIVVLDRIRENWRDVPKK-GISQVVDDSINQTLSRTINTSLT 239

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + VL M   GG VI +FA     GI V   SSI+IA  IL   +   
Sbjct: 240 TLLPVLAMFFLGGDVISNFAFAFLVGIGVGTYSSIYIAGAILAEWFLKS 288


>gi|218887253|ref|YP_002436574.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758207|gb|ACL09106.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1078

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 70/570 (12%), Positives = 160/570 (28%), Gaps = 32/570 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      +    + ++P  +P   I            V     
Sbjct: 9   RPIFACVISIVIMLAGFMA-----MRALPIAQYPEIVPPQVI---------VSAVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + +              Q  I++SFA     +     V   +Q 
Sbjct: 55  PEVIAATVASPLEQQINGVDGMLYMNSVSAGNGQMTISVSFAVGTDPDQATINVNNRVQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + ++  +  T      + ++          ++  S  ++   +D++       
Sbjct: 115 ATASLPEEVRRQGVTVTKRSPSILQVANMFSPDGRYDSVYISNYVLVNVVDELKRLPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L QL  T   ++      N        G           Y
Sbjct: 175 DASIFGAKDYSMRIWLHPDKLAQLKLTPGDVALAIREQNAQFAAGRIGQEPSSSPLELNY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           LV  K  ++                +    I   E             +           
Sbjct: 235 LVTTKGRLTN-------------PEEFENIILRAEPDGSTLLLKHVARVELGAKDYDVRT 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +        L           +          S + 
Sbjct: 282 QLNGKPTVAVGVFLTPGANALETADRVAAKMQELSQRFPDGISYSIPYDTTKFVRISITE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  L+   ++ ++++ T A +  LG ++   ++ G+V
Sbjct: 342 VVHTLVEAMVLVFLVVFLFLQNWRATLIPCLAVPVSIVGTFAGMYALGFSINTLTLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  +   +           +    +      V + F 
Sbjct: 402 LAIGIVVDDAIVVLENVERIMSSERLTPRKATIKAMEEVTGPVIAIVLVLCSVFVPVAFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   + FAIT+ +S++IS   A+++  A+   +++    +          +     
Sbjct: 462 GGLAGQMYKQFAITIAVSVVISGLVALTLTPALCALMLKPGHHEPPAFFRWFNNWFERVT 521

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
                  A         L     +     H
Sbjct: 522 HRYTGGVAFLIRRAGLALVLFACLGGATWH 551



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + I  T       G   N   +  ++  IG  V+D +VV + +     
Sbjct: 364 WRATLIPCLAVPVSIVGTFAGMYALGFSINTLTLFGLVLAIGIVVDDAIVVLENV--ERI 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           + +  ++ R    K++ E  G  +   +      +P+A  G   G +   FAI +A  +V
Sbjct: 422 MSSERLTPRKATIKAMEEVTGPVIAIVLVLCSVFVPVAFMGGLAGQMYKQFAITIAVSVV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++ +   +   +  
Sbjct: 482 ISGLVALTLTPALCALMLK 500



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 70/200 (35%), Gaps = 9/200 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +         +   + T        +E    G   ++     +++++ +     KW  
Sbjct: 835  QAIAAIEEVAAEVMPPEYTLAWSGSAYQEKQTGGSSSLVFVLGLVMVFLILAAQYEKWSL 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I  +   +   +    L G+  ++    +++TLIG +  + +++ +     +    
Sbjct: 895  PLAVIMAVPFALFGAITAVWLRGLANDVYLQISLVTLIGLAAKNAILIVEFA---VIKRH 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +S  +   ++        + TS+A  +  +P+A+    G +   S    +  G++ A 
Sbjct: 952  EGLSLVESAIEAARLRFRPIIMTSLAFVLGCVPLAISSGAGAASRHSIGTGVIGGMLAAT 1011

Query: 810  SSSIFIAAPILLFIYDWRAK 829
              + F        I     +
Sbjct: 1012 FIATFFIPMFYRLIMGVSER 1031


>gi|90578146|ref|ZP_01233957.1| Putative membrane protein SecD [Vibrio angustum S14]
 gi|90441232|gb|EAS66412.1| Putative membrane protein SecD [Vibrio angustum S14]
          Length = 585

 Score =  195 bits (494), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 161/515 (31%), Positives = 265/515 (51%), Gaps = 34/515 (6%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           L  ++    P  +       I LGLDLRGG   +L+VD         Q   D+LR   +K
Sbjct: 87  LTLALEPAAPMWLQDMGFEPIKLGLDLRGGVQFLLDVDVKQVYKNHAQQLMDDLRVNFRK 146

Query: 84  EGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           + I       +  +++ +        + +   +        +              +   
Sbjct: 147 QEIRGGRAELKGMDQVIVRLPSEAANDKVRQFIREQYPQWQA-----------TNGSADN 195

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + + LS+     + +  ++Q+++ +R RI+++GI+E+++QR G +RI I+LPG QDP+  
Sbjct: 196 LLLTLSEKEKTDLRNLTVQQNLQTMRSRIEELGITEASVQRQGENRIRIELPGVQDPAAA 255

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           + ++G TA ++F+ V               L D +GN   V  K  ++G H+  A A+F 
Sbjct: 256 KNVIGATASLAFYAVKE-----EGTGSTMILPDKNGNPVRVSRKPVLTGDHIVDARASFG 310

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQ 310
                P V+I+ D  G +   + +R N+GKP+A         A                Q
Sbjct: 311 ENGT-PEVNITLDSAGGKIMSDFSRMNVGKPMATSYSEYSRNAQGETVQTNKIISVATIQ 369

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                + +I+G  ++E A  LA +LRAGSL   + IVEER +G  LG+++I  G  A+  
Sbjct: 370 TQLGSRFRITGAGSLEDAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALAL 429

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVD 429
           GL + +LFM V Y + G VA+ ++  N+I+   LL+L+  A LTLP IAG+VL +G+AVD
Sbjct: 430 GLGVTLLFMAVWYRRLGWVANIALLTNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVD 489

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +N+L+ ERIR+  R  +S+  ++D GFS A+ TIFD+N T +I  VVL+  G G ++GFA
Sbjct: 490 TNVLIFERIRDMIRDGRSLAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFA 549

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +T+GL +L SMFT I   RA++  +      + + 
Sbjct: 550 LTLGLGLLTSMFTGIFASRAIINLVWGRDSRRDVR 584



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 95/260 (36%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       ++ V        S    N +   +      +    +  L       G    +
Sbjct: 326 GKIMSDFSRMNVGKPMATSYSEYSRNAQGETVQTNKIISVATIQTQLGSRFRITGAGSLE 385

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I+ G   + +     L+++ + ++  
Sbjct: 386 DAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALALGLGVTLLFMAVWYR-R 444

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   L+ ++    G  AL  G    L  +A ++  +G +V+  V++++R+R  ++ 
Sbjct: 445 LGWVANIALLTNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDMIRD 504

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                S    ID+  +   G     +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 505 ---GRSLAQAIDRGFSSAFGTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 561

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  I+  ++   ++ 
Sbjct: 562 TGIFASRAIINLVWGRDSRR 581


>gi|189426481|ref|YP_001953658.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Geobacter
           lovleyi SZ]
 gi|189422740|gb|ACD97138.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Geobacter lovleyi SZ]
          Length = 1055

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 73/689 (10%), Positives = 174/689 (25%), Gaps = 47/689 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GLL           + ++P   P              + V     
Sbjct: 8   RPIFAWVIAILVMLAGLLAI-----KTLPVSQYPPIAPPQIT---------INAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        I L+F           +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQKLNGIDNLIYMSSTSDSAGAVSINLTFKAGTDPNIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    +K  +      +  +++     +       + +  ++    D +   E   
Sbjct: 114 ATPLLPQVVQKQGIQVVKSTKNFLLIVGLISEDGSMDRHQLTDYMVSNLQDIVSRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +PS+L     T++ +       N       FG     +      
Sbjct: 174 ELQQFGTQ-NAMRIWLNPSKLNSYQLTSSDVVTALQAQNAQVSAGQFGGTPSNEGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                             
Sbjct: 233 TITARTLL-------------QTAEQFDAVILRTNPDGSTVRLKDVAVSKIGTENYDIVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +        A  +   T          L          +           S   
Sbjct: 280 RYKGKPLAGMAIRLAAGANALDTANRVKAKMTELSKFFPAGMQVVYPYDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV I++F+ +   +  L+   ++ + ++ T+ +LS  G ++   ++  +V
Sbjct: 340 VVHTLVEAVLLVFIIMFLFLQNIRATLIPTIAVPVVLLGTMGVLSAAGFSINTLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + IGL VD  I+V E +      +  S   +      +  S +           + + FF
Sbjct: 400 IVIGLLVDDAIVVVENVERIMSEEGLSPHDATIKSMGQITSALVGIATVLSAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------------KKMKSI 523
           GG      R F+IT+  ++++S+  A+ +  A+   +++               K  +  
Sbjct: 460 GGSTGVIYRQFSITIIAAMILSVLVALILTPALCSTLLKPVEKGHEPGECGPFCKFFRWF 519

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +   F +   + V    + +   +            + +G I   V
Sbjct: 520 NRKFDWARGKYEGIVGRSFNKPIRYLVVYGCIVAAMMLFFHRLPTAFLPDEDQGFIICQV 579

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E L+   +  +    E    V      G           +K    
Sbjct: 580 QLPAGATQERTLKVVEQLEQHFLEKEKKTVEAIITVAGFSFAGSGQNMGLAFVKLKDWKL 639

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                               ++       
Sbjct: 640 RPTKDMKAPAVAGRAMGAFSKIKDGLAFA 668



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V  +    +  DI  +        +        +++     ++    ++++  
Sbjct: 258 STVRLKDVAVSKIGTENYDIVARYKGKPLAGMAIRLAAGANALDTANRVKAKMTELSKFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + I +++  +     L     + + + 
Sbjct: 318 PAGMQVVYPYDTTPFVKISIEEVVHTLVEAVLLVFIIMFLFLQNIRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T+G  +  G   N   + A++ +IG  V+D +VV + +     +    +S  D   KS+
Sbjct: 378 GTMGVLSAAGFSINTLTMFALVIVIGLLVDDAIVVVENV--ERIMSEEGLSPHDATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  +       LPMA +GGS       F+I +   ++++   ++ +   +
Sbjct: 436 GQITSALVGIATVLSAVFLPMAFFGGSTGVIYRQFSITIIAAMILSVLVALILTPAL 492



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 78/255 (30%), Gaps = 11/255 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +          Q G    + ++G  +  +  Q   G S  +           
Sbjct: 793  VRNDKGDMVPFSAFATARWQYGSPRLERYNGIPSVEIMGQAAAGISTGEAMAEMEKMAAK 852

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  +A+     +   W      +  L L
Sbjct: 853  LPSGIGYEWTGLSYEEKNAGAQAPALYAISLLVVFLAVA---ALYESWTIPFVNLLMLPL 909

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    L  +  ++     +LT +G S  + +++   +++ +          D   
Sbjct: 910  GLVGAVTAVTLRLLPNDVYLQIGLLTTVGLSTKNAILIIQFIKEQLHQ---GHELVDATL 966

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             ++   L   + TS+A F   LP+A+    G +   +    +  G++ A    +      
Sbjct: 967  SAVKIRLRPVIMTSLAFFFGTLPLALTKGAGAAAQNAIGTAVTGGLLSATFIDLIFIPFF 1026

Query: 820  LLFIYDW--RAKNAR 832
             + +     R K  +
Sbjct: 1027 FVMVSRLFGRKKYKK 1041


>gi|4321266|gb|AAD15664.1| resistance nodulation cell division family member TbtB [Pseudomonas
           stutzeri]
          Length = 1046

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 77/687 (11%), Positives = 184/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G L  +     +  + ++P+                  +      
Sbjct: 8   RPIFAWVLAIVAMLAGALSLV-----KMPISQYPNIAAPAV---------SIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  S L              +  I ++F      +    +V   LQ 
Sbjct: 54  AQTVQDTVVQVIEQQLSGLDGFRYMSAESASDGSMTIIVTFEQGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  L     ++   ++             +    I  Q  D I   +   
Sbjct: 114 ATPRLPEEVQRQGLRVVKYQQNFFLIIGLADSTGKMSNFDLGNVIASQLQDPISRIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    DP++L     T   ++      N        G    R       
Sbjct: 174 DYMLFGSP-NAMRIWLDPAKLNSYQLTPGDVADAIREQNVQVSSGQLGGLPTRTGVQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  ++                +    +   +    +        +           
Sbjct: 233 TVLGKTRMT-------------TPAEFEEILVKVKTDGSQIRVKDVAQVALGADNFSISS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   T+E         +A                    S S 
Sbjct: 280 THNGKPSAGLALRLASGGNLLETVEAVKAEMEKQKAYLPEGIEVFYPYDTTPVVEASISS 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++   ALL   G ++ + ++  +V
Sbjct: 340 VVQTIVEAVALVFLVMYLFLQNFRATLIPTLAVPVVLLGAFALLPYFGLSINVLTMYAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  +   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERLMHEEGLTPLEATRKSMGQIQGALVGIGLVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
           GG      + FA+T+ L + +S+  A+    A+   I                  F  I 
Sbjct: 460 GGSAGIIYKQFAVTIVLCMSLSVLVALIFTPALCATILKKPKGDAHHEKKGFFGWFNRIF 519

Query: 536 DCIAIQFMR--------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           D    +F R           + +   ++ +                + +G + + V    
Sbjct: 520 DRGTNRFERGVGGMLKHRGRYLLAFMLITAGTGYLFTQIPKAFLPNEDQGLMMVEVRMPV 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  ++ L+ +     S ++   +    +      G        L M+K        
Sbjct: 580 NSSAERTQAVLQEVSDYLGSEEDHLIDHVLSINGFNFAGRGQNSGLTLLMLKDWSVRQGD 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
              + +          ++    ++  +
Sbjct: 640 GEDVFSLAERANARFAQIKDATVMAFV 666



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 84/246 (34%), Gaps = 6/246 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + +  V           IS  +       L       G+ +     ++   +K    +
Sbjct: 258 SQIRVKDVAQVALGADNFSISSTHNGKPSAGLALRLASGGNLLETVEAVKAEMEKQKAYL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I   +  ++ +   + + +++  + +   L     + + + 
Sbjct: 318 PEGIEVFYPYDTTPVVEASISSVVQTIVEAVALVFLVMYLFLQNFRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                   FG+  N+  + A++  IG  V+D +VV + +     ++   ++  +   KS+
Sbjct: 378 GAFALLPYFGLSINVLTMYAMVLAIGLLVDDAIVVVENV--ERLMHEEGLTPLEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V   +      +PMA +GG   +I   FA+ +   + ++   ++     +   
Sbjct: 436 GQIQGALVGIGLVLSAVFVPMAFFGGSAGIIYKQFAVTIVLCMSLSVLVALIFTPALCAT 495

Query: 823 IYDWRA 828
           I     
Sbjct: 496 ILKKPK 501



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/418 (10%), Positives = 120/418 (28%), Gaps = 23/418 (5%)

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
             +L+ +         + VF   +   +R ++ I D+ + A +   +L          F  
Sbjct: 626  TLLMLKDWSVRQGDGEDVFSLAERANAR-FAQIKDATVMAFVPPAILEMGNAMGFNLFLQ 684

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
                    ++  A +     +     +  ++++  N           I  +  RA    +
Sbjct: 685  DNSGVGHAALMDARN---QFLQLANGHPHLRAVRPNGKDDEPQFQVNIDDEKARALQVSI 741

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
                     +   ++ +        K    +    +  +             +G++   +
Sbjct: 742  ASINETMSAAWGSMYVNDFIDQGRVKRVY-IQGQDDSRISPEDFGKWYVRNALGEMVPFS 800

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                  ++             +  +                    +        L   G+
Sbjct: 801  AFATGEWVFGSPKLERYGGISSVEILGEPAPGYSTGDAMVAIAEIMKELPPGIGLSYTGL 860

Query: 671  ----------VGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
                        ++ +   +++++    +   W   +  +  + L I   +    +  + 
Sbjct: 861  SYEEIQTGDQAPMLYALTVLIVFLCLAALYESWSVPVSVMMVVPLGILGAVLATLMRELN 920

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             ++     ++T +G S  + +++ +  +   +     +   D    +    L   V TS+
Sbjct: 921  ADVYFQIGLMTTVGLSAKNAILIVEFAKDLYEKE--GMPLVDAAVHAARLRLRPIVMTSL 978

Query: 778  AAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A    VLPMA+    G     S A  +  G+V A   ++F      + +        +
Sbjct: 979  AFTFGVLPMALASGAGAGSQHSIATGVVGGMVTATVLAVFFVPLFYVVVVKLFEGRKK 1036


>gi|83944216|ref|ZP_00956672.1| Cation/multidrug efflux pump, RND family protein [Sulfitobacter sp.
           EE-36]
 gi|83845083|gb|EAP82964.1| Cation/multidrug efflux pump, RND family protein [Sulfitobacter sp.
           EE-36]
          Length = 1037

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 78/684 (11%), Positives = 187/684 (27%), Gaps = 40/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  IG+L  L        + ++P   P +                    
Sbjct: 8   RPIFAWVISIFIMGIGVLSIL-----NLPVAQYPQIAPPSV---------AVRASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        S        ITL+F      +    +V   L  
Sbjct: 54  AQTVANTVTQVIEQQMTGLDGLRYISSSSTSEGGASITLTFETGTDVDIAQVQVQNKLSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            ++ L    ++  +         +++     +     A +    +    +++I   E   
Sbjct: 114 ASALLPEPVQRQGITVQKSSAGFLMVIGLIGENGKYDATDLGDYMQSNLVNEISRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T + +       N       FG R   +      
Sbjct: 174 SVQVFGAQ-YAMRIWLDPVKLAAFELTPSDIVAAVSAENAQISAGSFGSRPAVEGQALNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                     +   E             +           
Sbjct: 233 TITAQSLLT-------------SPEDFRQIVLRAETDGGLVLLNDVARVEIGSESYATIS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +   T          L A        +V          S   
Sbjct: 280 RYNRNAATGMAVSLAPGANALDTAAAVEQRIEELSAFFPEGVSYVVPFDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VIKTLIEAIVLVFIVMYLFLQNIRATLIPTLAVPVVLLGTFGVLAAFGFSINTLTMLGMV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +     + +     +      +     I  + + + +   + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEHIGPLEATRKSMDQITGALIGIAVVLSAVFVPMAFF 459

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDINPLSR 530
            G      + F+IT+  ++ +S+  A+++  A+   +++    +         +      
Sbjct: 460 PGSTGVIYKQFSITIISAMTLSVVVALTLTPALCASLLKQGSHEKRRGFFGLFNRGFDKT 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  +     R    G+    + +      + T       + +G +   V A     
Sbjct: 520 LGGYTGTVGWLVRRPLRVGLVYLAIIAAMVFLFMRTPAGFLPAEDQGTLFTLVQAPTGAT 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  ++ ++   +  +    E  F V      G       V   +K          +
Sbjct: 580 AERTLEVIKQVENYYLENEGDVVESVFGVVGFSFAGQGQNLGLVFVRLKDWEQRTEAAQS 639

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
           +Q           ++    +  ++
Sbjct: 640 VQAVAGRAFGAFSQIQDAMVFPIV 663



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 87/248 (35%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +      +        +        +++     +E   ++++   P 
Sbjct: 260 VLLNDVARVEIGSESYATISRYNRNAATGMAVSLAPGANALDTAAAVEQRIEELSAFFPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + I  +I + + + I +++  +     L     + + +  T
Sbjct: 320 GVSYVVPFDTTPFVKISIEEVIKTLIEAIVLVFIVMYLFLQNIRATLIPTLAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A FG   N   +  ++  IG  V+D +VV + +     +    I   +   KS+++
Sbjct: 380 FGVLAAFGFSINTLTMLGMVLAIGLLVDDAIVVVENV--ERIMEQEHIGPLEATRKSMDQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 ITGALIGIAVVLSAVFVPMAFFPGSTGVIYKQFSITIISAMTLSVVVALTLTPALCASLL 497

Query: 825 DWRAKNAR 832
              +   R
Sbjct: 498 KQGSHEKR 505



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 51/135 (37%), Gaps = 9/135 (6%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + + I  TL    L G E  +     +LT++G +  + +++ +  R   
Sbjct: 889  SWSIPFAVMLAMPIGILGTLTGAYLGGFENGVFFQVGLLTVVGLTGKNAILIVEFARD-- 946

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                   S  D    +  +     + TSMA  + VLP+ +  G+        +  G++  
Sbjct: 947  -RRQEGESIFDAAVDAARQRFRPIIMTSMAFSLGVLPLVLSTGAG-SGGRTAIGAGVLAG 1004

Query: 809  ASSSIFIAAPILLFI 823
                  IAA +L  +
Sbjct: 1005 T-----IAATVLGVL 1014


>gi|120556401|ref|YP_960752.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Marinobacter
           aquaeolei VT8]
 gi|120326250|gb|ABM20565.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Marinobacter aquaeolei VT8]
          Length = 1036

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 74/688 (10%), Positives = 172/688 (25%), Gaps = 48/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  M+   G L           +++FP   P               + L V+ 
Sbjct: 8   RPIFAWVVALMLMLGGGLAV-----KNLAVNQFPDVAPPA-------------IALSVNY 49

Query: 63  DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +Q       ++  + L              +  I  +F      +    +V  
Sbjct: 50  PGASAQTVQDTVVQVIEQQLNGLDGLRYISSESNSDGSMTIIATFEQGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ  N  L  + ++  +  +  K     +             + +  I+    D +  +
Sbjct: 110 KLQLANPLLPEEVQRQGIRVSKYKVNFFTVFALTSPDGKYTQGDLADYIVSNIQDPVART 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L        +    DP +L     T   +       N        G     +  
Sbjct: 170 QGVGDFLLFGSQ-YAMRLWLDPEKLNSYQLTPQDVINSVRAQNVQVSAGQLGGLPTAEGV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V  K                    +    +        +        +       
Sbjct: 229 QLQATVIGKQR-------------MKTAEEFENILLKVNPDGSQVRLADVAEVNLGNENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L          +           
Sbjct: 276 ATTGKYNGAPAAGMALRLATGANQLETAGRVKETLAELERFLPEGVEIVFPYDTTPVVSA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++   ++ + ++ T  +L   G T+ + ++
Sbjct: 336 SIETVAMTLIEAVVLVFLVMFLFLQSWRATIIPTLAVPVVLLATFGVLYAFGFTVNVMTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERLMEEEGLSPKEAAKKSMDQISGALLGIGLVISAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + FFGG      R F++T+  ++  S+  A     A+   +       +R       +  
Sbjct: 456 MAFFGGSTGVIYRQFSVTIISAMSFSVLVAFIFTPALCATLLKPGDQHVRKGFFGWFNRT 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      ++    R   +     +L                  + +G + + V   
Sbjct: 516 FDRSADRYKSGVSYLIKRKGRFMGVYLLLVVAVGFLFKGLPTAFLPDEDQGVMIVMVQLP 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                    + L       +  ++   +    VR     G       +   +K       
Sbjct: 576 TNATGERTEAVLAEAGNYLLEEESEVVKSVMSVRGFNFAGRGQNSGILFVDLKPFADRES 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              ++            ++    +  ++
Sbjct: 636 FAQSVFALAGRSGARFAQIKDAIVFPIV 663



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L+ V       +    + +        +        + +     ++    ++   +
Sbjct: 258 SQVRLADVAEVNLGNENYATTGKYNGAPAAGMALRLATGANQLETAGRVKETLAELERFL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P             +    I    + +I + + + + +++    W   +     + + + 
Sbjct: 318 PEGVEIVFPYDTTPVVSASIETVAMTLIEAVVLVFLVMFLFLQSWRATIIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G    FG   N+  + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 ATFGVLYAFGFTVNVMTMFAMVLAIGLLVDDAIVVVENV--ERLMEEEGLSPKEAAKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  +   +      LPMA +GGS       F++ +   +  +   +      +   
Sbjct: 436 DQISGALLGIGLVISAVFLPMAFFGGSTGVIYRQFSVTIISAMSFSVLVAFIFTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 74/252 (29%), Gaps = 8/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V   +   +            G    Q + G     ++     G S              
Sbjct: 786  VRNAQGEMVPFAAFATGEWVFGSPRLQRYQGLPATQIQGAPANGYSTGDAMAALERIAAD 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                             +   + +   ++ +++  + +     +   W      I  + L
Sbjct: 846  LPQGLGLEYTGLSFEEKQAGNQAMMLYLLSILVVFLCLA---ALYESWSIPFAVIMLVPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +      G+  ++     +LT +G +  + +++ +  R+  +             
Sbjct: 903  GVLGAVLATMARGLSNDVFFQVGMLTTMGLAAKNAILIVEFARQLYEQEGK--PLLQATA 960

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    VLPMA+  G+      +    +  G + A   +IF     
Sbjct: 961  EAARLRLRPIIMTSLAFIFGVLPMAIASGASSASQHAIGTAVVGGTLAATILAIFFVPLF 1020

Query: 820  LLFIYDWRAKNA 831
             +F+     K  
Sbjct: 1021 YVFVVGLTGKRK 1032


>gi|119776686|ref|YP_929426.1| AcrB/AcrD/AcrF family protein [Shewanella amazonensis SB2B]
 gi|119769186|gb|ABM01757.1| AcrB/AcrD/AcrF family protein [Shewanella amazonensis SB2B]
          Length = 1046

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 71/689 (10%), Positives = 177/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L           + ++P+  P               +V+  + 
Sbjct: 8   RPIFAWVIAILVMLAGVLAI-----KSLPVSQYPNIAPPT-------------VVISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +     +   +         +ITL+F      +    +V  
Sbjct: 50  PGASAKTLEDSVTQVIEQRMTGLDNLRYINSTSDGFGNAEITLTFNAEADADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + +   +         +++     +       + +  +     D +   
Sbjct: 110 KLQSAMPLLPQEVQAQGVRVNKSTSGFLMVLGFVSEDGSLTKNDIADYVGSNVQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L Q   TT  +       N        G        
Sbjct: 170 AGVGEITLFGAP-YAMRIWLDPLKLTQYSLTTQDVIAAIREQNAQVSAGQLGGAPAVLGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +    + F      +       
Sbjct: 229 ELNATVSAQSRL-------------ETPEQFRKIILKSDTNGAKVFLGDVARVELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +               S     +   T        A ++         +           
Sbjct: 276 VVESFYNGRPAAGLAISLATGANALDTATRVREKIAEMKPFFPAGLDVVYPYDTTPFVKQ 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIEGVVHTLLEAVVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLGPVEATRKSMDQITGALVGIGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + F  G      R F+IT+  ++ +S+  A+ +  A+   +           ++      
Sbjct: 456 MAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCATMLKPLKPGHSHGQHGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +           +A    R+         L        +         + +G +   V
Sbjct: 516 NRSFEKMTSRYEGSVAAILKRSARVMAIYLALVVATGWIFMRMPTAFLPDEDQGILFAQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +             LE +       +  +    F V      G           +K    
Sbjct: 576 ILPTNSSQESTVKVLEKMDKFFREDEKDNVNSVFSVAGFSFAGMGQNMGIAFVGMKDWAV 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                  + + +        ++    +  
Sbjct: 636 REGEGQDVFSLQGRAMMAFSQIKEAFVFA 664



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 7/232 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L +      SF N        + L          TRV E + +          +
Sbjct: 264 DVARVELGAESYVVESFYNGRPAAGLAISLATGANALDTATRVREKIAEMKPFFPAGLDV 323

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
                  P + + +    +  ++ + + + + +++  + +   L     + + +  T   
Sbjct: 324 VYPYDTTPFVKQSI-EGVVHTLLEAVVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAI 382

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            + FG   N   + A++  IG  V+D +VV + +     +    +   +   KS+++  G
Sbjct: 383 LSAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLGPVEATRKSMDQITG 440

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             V   +      +PMA   GS       F+I +   + ++   ++ +   +
Sbjct: 441 ALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 78/267 (29%), Gaps = 11/267 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 +      +       V  S   +         +   N     N            
Sbjct: 777  YRMQPEDLNTWYVRNANGEMVPFSAFATGRWDFGSPRLERFNGLPAMNIQGATAPGYSTG 836

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + ++V++            + E              +  + I  +  L+   +  
Sbjct: 837  DAMKDIEKIVEQLPPGFGVEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALYE 891

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L I   L      G+  ++     +LT +G +  + +++ +  ++  
Sbjct: 892  SWSVPFAVVLVVPLGIIGALLAMNGRGLSNDVFFQVGLLTTVGLATKNAILIVEFAKEY- 950

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
              Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G+
Sbjct: 951  --YEKGAGLIEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGAQNAIGTGVLGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + +    IF      + +    +K  +
Sbjct: 1009 MSSTFLGIFFVPLFFVIVERIFSKREK 1035


>gi|209520688|ref|ZP_03269439.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. H160]
 gi|209498888|gb|EDZ98992.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. H160]
          Length = 1076

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 68/575 (11%), Positives = 153/575 (26%), Gaps = 46/575 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL            + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIILMLAGLASVF-----TLPIAQYPTIAPP-------------SIQISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASADTVQNTVTQVIEQQMSGLDHLLYLASTSDDSGTATITLTFAAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++     T      +++          +  + +  +     D I   
Sbjct: 110 KLQLATPLLPQAVQQLGTRVTKSSSSFLLVMAFVSTDGSMNKYDLANYVASNIQDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    D ++L     T   +       N    G   G        
Sbjct: 170 DGVGTVTLFGSQ-YAMRIWLDANKLNNFGLTPLDVQTALQAQNVQVAGGGLGGTPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +     +                 +    +        +        +       
Sbjct: 229 VLQATITQATLL-------------NTPEQFGNILLKVNQDGSQVRLRDVARVELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A L        +             
Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALSTAKAVRTKIAELSKYFPHGLVVQYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++S++G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMSVVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMQEEGLSPREATRKAMDQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I      +   
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALILTPALCATI-----LKPIPKGHHEKATG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                   F  +R             S   L  + 
Sbjct: 511 FFGWFNRTFNNSRDKYHSGVHHVIKRSGRWLIIYM 545



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/426 (11%), Positives = 138/426 (32%), Gaps = 19/426 (4%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L  L +T      A I L      + +I   +   +       +  ++    +R    + 
Sbjct: 75  LLYLASTSDDSGTATITLTFAAGTNPDIAQVQVQNKLQLATPLLPQAVQQLGTR----VT 130

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSIL-------ISMFTAISIVRAMMIFIIRY 517
            S+ + L+    +   G       A  +  +I              +   +  M   +  
Sbjct: 131 KSSSSFLLVMAFVSTDGSMNKYDLANYVASNIQDPISRIDGVGTVTLFGSQYAMRIWLDA 190

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
            K+ +  + PL     +              G   S+   +    +     LN    F  
Sbjct: 191 NKLNNFGLTPLDVQTALQAQNVQVAGG--GLGGTPSVPGQVLQATITQATLLNTPEQFGN 248

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            +         V L  V       +  +   +                 ++++  + +  
Sbjct: 249 ILLKVNQDGSQVRLRDVARVELGGENYNFDTKYNGQPTAGFGIQLATGANALSTAKAVRT 308

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
              ++++  P   +           R  I + +  ++   + + + +++  +     L  
Sbjct: 309 KIAELSKYFPHGLVVQYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIP 368

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + + +  T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +S
Sbjct: 369 TIAVPVVLLGTFAIMSVVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMQEEGLS 426

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            R+   K++++  G  V  ++      +P+A  GGSV      F++ +   +V++   ++
Sbjct: 427 PREATRKAMDQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVAAMVLSVLVAL 486

Query: 814 FIAAPI 819
            +   +
Sbjct: 487 ILTPAL 492



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 83/262 (31%), Gaps = 10/262 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +   A   V  S   +   +     +   N                 
Sbjct: 777  PFRMKPEDVNSWFVRNSAGTMVPFSAFANTQWAFGSPKLERYNGISSVEIQGAAAAGKST 836

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   +  +V K    +    T  + +         ++    + +++  + +     + 
Sbjct: 837  GQAMGAMEAIVAKLPAGVGYEWTGLSLQERQSGSQAPILYG--ISILVVFLCLA---ALY 891

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L +   L    L G+E ++     +LT +G S  + +++ +  R  
Sbjct: 892  ESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARD- 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                +  +   +   ++    L   + TS+A  + VLP+A+    G +   +    +  G
Sbjct: 951  -LQQSEGMGPIEAALEAARLRLRPILMTSLAFILGVLPLAISNGAGSASQHAIGTGVIGG 1009

Query: 805  IVVAASSSIFIAAPILLFIYDW 826
            ++ A   +IF+     + I   
Sbjct: 1010 MLTATFLAIFMIPMFFVVIRAK 1031



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 137/520 (26%), Gaps = 28/520 (5%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         L     G +       
Sbjct: 536  RSGRWLIIYMVVIFAVGLLFV------RLPKSFLPDEDQGTMFVLVQTPSGSTQETTARA 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              D  +  L      + S     G       Q    + +   D   +++   KV   ++ 
Sbjct: 590  LKDVSDYLLIDEKAIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHADQKVQALVRR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +    +       +       I  + +    D  +          + +  + +    +  
Sbjct: 650  LFMHFSTYKNA-TVYPVNPPSIPELGTAAGFDFQLQDRGGIGHAKLMEARNMLLGLAAKD 708

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
              L   R        Q    +     +   +S   +    S       V    D+DG   
Sbjct: 709  PILAQVRPNGLNDTPQFKVSIDHEKASALGVSLATIDQTFSIAWASAYVNNFLDTDGRI- 767

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                KV + G               + V                   N           R
Sbjct: 768  ---KKVYLQGDAPFRMKP-------EDVNSWFVRNSAGTMVPFSAFANTQWAFGSPKLER 817

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +     +   + +G        I+A +            ++ER  G      S 
Sbjct: 818  YNGISSVEIQGAAAAGKSTGQAMGAMEAIVAKLPAGVGYEWTGLSLQERQSG------SQ 871

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  I   +V + L  +             + L VI  L   +L G    +    G++
Sbjct: 872  APILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931

Query: 422  LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +GL+  + IL+ E  R+ +  +      +           I  +++  ++  + L   
Sbjct: 932  TTVGLSAKNAILIVEFARDLQQSEGMGPIEAALEAARLRLRPILMTSLAFILGVLPLAIS 991

Query: 481  ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
               G  +       +   +L + F AI ++    + I   
Sbjct: 992  NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031


>gi|300697414|ref|YP_003748075.1| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum CFBP2957]
 gi|299074138|emb|CBJ53683.1| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum CFBP2957]
          Length = 1051

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 82/684 (11%), Positives = 181/684 (26%), Gaps = 39/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L           + ++PS  P                      
Sbjct: 8   RPIFAWVLAIIVMLAGALSIA-----TLPIAQYPSIAPPAI---------AITATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    L        +     +  ITL+F +    +    +V   L  
Sbjct: 54  AKTLEDTVTQIIEQKMKGLDHLSYMASTSESSGSVTITLTFENGTDPDTAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      + +     +    +  + S  +     D I   E   
Sbjct: 114 ATPLLPQEVQQQGVQVTKSATNFLNVLAFTSEDGSMNGSDLSDYVAANVQDAISRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G      +     
Sbjct: 174 DTTLFGSQ-YAMRIWLDPNKLSNFSLTPLDVKTAIQAQNAQVSAGQLGAMPALGNQQINA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +   +    +        I           
Sbjct: 233 TITSQTRL-------------KTVEEFGNILLRTQTDGAQVRLRDVARIELGSENYNTVG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T++      A L     P                S   
Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFPPGMKVQKPYDTTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++  +V
Sbjct: 340 VVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAACGFTINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQITGALVGVALVLAAVFVPMAFF 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F+IT+  ++ +S+  A+ +  A+   +     +K +              
Sbjct: 460 KGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCATL-----LKPVKKGHAQATTGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R      GI       S   +  +G+ + +   G ++L V      D   +   
Sbjct: 515 FNRTFDRGNHRYQGIVRHMLGKSRRYMAVYGMLFALVVVGFMKLPVGFLPDEDQGTLF-V 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L  L  G  + +  D  +           ++V+    +       +              
Sbjct: 574 LAQLPPGATNARTEDVIRQVEHHFLVDQKEAVSGVFSVAGFSFAGSGQNMGFAFVKLRPW 633

Query: 658 GPKISRELIRKGIVGVIISAIAML 681
             +    L   G+V       A L
Sbjct: 634 NERKGEALSVNGVVAKAFGFFATL 657



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 85/246 (34%), Gaps = 6/246 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +  +   +        L        +++   + ++    ++    P
Sbjct: 259 QVRLRDVARIELGSENYNTVGRYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          R  I + +  ++ +   + + +++  + +   L     + + +  
Sbjct: 319 PGMKVQKPYDTTPFVRISIEEVVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G  A  G   N   + A++  IG  V+D +VV + +     +    +  ++   KS+ 
Sbjct: 379 TFGVLAACGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSMG 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  V  ++      +PMA + GS       F+I +   + ++   ++ +   +   +
Sbjct: 437 QITGALVGVALVLAAVFVPMAFFKGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCATL 496

Query: 824 YDWRAK 829
                K
Sbjct: 497 LKPVKK 502



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 60/170 (35%), Gaps = 11/170 (6%)

Query: 668  KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFN-LTAV 723
             G   ++ +   + +++    +   W      I  + L +   L   A+   + N +   
Sbjct: 869  TGQTTLLYTLSILFVFLCLAALYESWAIPFSVIMVVPLGVLGAL-IGAILTWKMNDVYFQ 927

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              +LT IG +  + +++ +  +    L+   +   +    +    L   + TS+A  + V
Sbjct: 928  VGLLTTIGLASKNAILIVEFAKD---LHAQGMRLAEAAMTAARMRLRPILMTSLAFILGV 984

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            LPM      G     +    +  G++     +IF      + +     + 
Sbjct: 985  LPMVTGSGAGAGAQHALGTAVIGGMLSGTVLAIFFVPLFFVLVRGLFRRK 1034


>gi|317504461|ref|ZP_07962439.1| multidrug efflux RND transporter MexF [Prevotella salivae DSM
           15606]
 gi|315664404|gb|EFV04093.1| multidrug efflux RND transporter MexF [Prevotella salivae DSM
           15606]
          Length = 1062

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 68/535 (12%), Positives = 157/535 (29%), Gaps = 40/535 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  IG+L           + +FPS  P              ++V   D
Sbjct: 7   RRPVLAIVVSLVIVFIGILSLF-----NLPITQFPSISPPK-----------VNVV--AD 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N  + +     L   L    G+         +   +I + F         A  V 
Sbjct: 49  YPGANNELMIKSVLIPLEQALNGVPGMKYIESDAGNDGEGEINIVFKLGTDPNVDAINVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL     +  +  + E+   ++      D                   ++  
Sbjct: 109 NRVSAATNKLPPAVVREGVKISREEPNILMYINLYSDDPKVDQNFLFNYADINISPELAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P +L     + + ++      +        G    + +
Sbjct: 169 VDGVGDLDILGTRSFAMRVWLKPDKLTAYGLSASDITDALQQQSIEASPGKLGESSGKHA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++     +                +    +       +        ++     V
Sbjct: 229 QSFEYVLKYPGRYT-------------TPEEYSNIVVKSTPDGQFIRLKDVADVSLGSEV 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +    I+      A L+          +         
Sbjct: 276 YDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDMPKGMHYELSYDISRFLD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV  V+F+ +   +  L+   ++ +++I + A+++  G TL + S
Sbjct: 336 ASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLIGSFAVMNAFGITLNMIS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +V+ IG+ VD  I+V E +  +  ++      +           I    +      +
Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVKIAQEGLEPLEATQKAMKEISGAIVAVTLVMASVFI 455

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            + F G   G   R F+IT+   I++S FTA+++  ++   I+  ++   I    
Sbjct: 456 PVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCALILTRERDNHIKKTW 510



 Score = 94.8 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + + L  V       ++ DI           +   Q    ++    + ++     + + +
Sbjct: 259 QFIRLKDVADVSLGSEVYDIYSTLNGHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDM 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDIT 705
           P            +     I K I  +  + I +  +       W  AL     + + + 
Sbjct: 319 PKGMHYELSYDISRFLDASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLI 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            +      FGI  N+ ++ A++  IG  V+D +VV + +  N+K+    +   +   K++
Sbjct: 379 GSFAVMNAFGITLNMISLFALVMAIGIVVDDAIVVIEAV--NVKIAQEGLEPLEATQKAM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  V  ++      +P+A  GG        F+I +A GIV++  +++ +   +   
Sbjct: 437 KEISGAIVAVTLVMASVFIPVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCAL 496

Query: 823 IYDWRAKN 830
           I      N
Sbjct: 497 ILTRERDN 504



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 10/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V  +       +  +               +    +   S A         K I E+  
Sbjct: 789  NVKNNQGEMVPYADFLHMEKVYGMSEMTRHNLYNSAEVTGSAAAGYSSGQAIKAIEEVAA 848

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRFK---WYFALGAITTLILD 703
             +     +     I+++ + +G   +II  +    +Y+ +  +   +   L  IT L   
Sbjct: 849  STLPHGYDYDFAGITKDEVDQGNQALIIFIVCLTFVYLILSAQYENFLLPLPIITCLPAG 908

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I  T  F  L G+E N+ A  A++ LIG    + V++ +     ++ +    S R    +
Sbjct: 909  ICGTFIFLKLTGLENNIYAQVAMVMLIGLLGKNAVLMVE---YAVQRHNLGKSIRAAAIE 965

Query: 764  SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    +LP+    G   I   +     A G++      + +   + 
Sbjct: 966  GAAARFRPILMTSFAFIAGLLPLVFAHGAGAIGNRTIGTAAAGGMLFGTCFGLILVPGLY 1025

Query: 821  LFIYD 825
                 
Sbjct: 1026 YIFGR 1030


>gi|285017901|ref|YP_003375612.1| rnd superfamily protein [Xanthomonas albilineans GPE PC73]
 gi|283473119|emb|CBA15625.1| probable rnd superfamily protein [Xanthomonas albilineans]
          Length = 1042

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 71/684 (10%), Positives = 193/684 (28%), Gaps = 53/684 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G +           ++++P   P               + +    
Sbjct: 9   RPIFAWVLAICIMAAGAIAVF-----TLPVEQYPDIAPPT-------------VNVSATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +      ++      +   +K           S    Q +I+++F      +    +V  
Sbjct: 51  NGASAQTVEDSVTQVIEQQIKGIDHLLYFSSTSSSSGQARISITFDQGANPDIAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  + ++  +     +  S+++            ++ S  ++    D I   
Sbjct: 111 AVNQALNRLPQEVQQQGVTVAKSQGDSLMVVALYDTTDKLDNVDISDFLVSTLQDPISRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L       + +    +  N        G        
Sbjct: 171 DGVGEINVFGAQ-YAMRVWLDPHKLDAYKLMPSDVRSAILAQNTQVTAGELGALPTVADQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I                 +       
Sbjct: 230 ALNATVTAQSRL-------------QTPEQFRNIILATREDGSSVRLGDVARVEIGAENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   L     +    +  +  +   T +        L++   P         +      
Sbjct: 277 QNTTTLNGHPASGFSLTLSSGANALATSDAVRATIERLKSTFPPGVKVAYPRDSTPFVRV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +  G+  L+   ++ + ++ T  +L+  G T+   ++
Sbjct: 337 SIEGVVHTLVEAILLVVVVMFLFLQNGRATLIPAITVPVVLLGTFGILAAAGFTINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     +   S   + +         +    +      + 
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMHEQHLSPREATECSMGEITGALVGITVVLGAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------KKMKSIDI 525
           + FFGG      R F+IT+  ++ +S   A+++  A+   +++         +  +  + 
Sbjct: 457 MAFFGGSTGIIYRQFSITIASAMALSALVALTLTPALCATLLKPVEQERKLSRFFQWFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           +           +     R R W    +++     +    T      ++ +G +Q+    
Sbjct: 517 SVERGQDAYQRRLDTLLRRPRRWMALYALVVLAMVVLYARTPTGFLPVEDQGQVQIQFTT 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                L+      ++L      +     + N          ++    +        +   
Sbjct: 577 PEGTPLA----KTQALGKRIGDYFMTHEKDNLTAIFMVIGRNNAGIGQNAGQAFLALKPW 632

Query: 646 VPLSTIQNTEIVGPKISRELIRKG 669
              +     + +  + +      G
Sbjct: 633 GERNRDNTAQAIIDRANAYFRDSG 656



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 96/264 (36%), Gaps = 6/264 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            F+  I         V L  V       +    +        +          +++A + 
Sbjct: 246 QFRNIILATREDGSSVRLGDVARVEIGAENYQNTTTLNGHPASGFSLTLSSGANALATSD 305

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YF 692
            +    +++    P               R  I   +  ++ + + +++ +++  +    
Sbjct: 306 AVRATIERLKSTFPPGVKVAYPRDSTPFVRVSIEGVVHTLVEAILLVVVVMFLFLQNGRA 365

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L    T+ + +  T G  A  G   N   + A++  IG  V+D +VV + +     ++ 
Sbjct: 366 TLIPAITVPVVLLGTFGILAAAGFTINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMHE 423

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +S R+  + S+ E  G  V  ++      LPMA +GGS       F+I +A  + ++A
Sbjct: 424 QHLSPREATECSMGEITGALVGITVVLGAVFLPMAFFGGSTGIIYRQFSITIASAMALSA 483

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ +   +   +     +  ++
Sbjct: 484 LVALTLTPALCATLLKPVEQERKL 507



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 9/157 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I S + + + +   ++ W   +  +  + L +  T+    L G   ++     +LT IG 
Sbjct: 873  IASILFIFLCLAALYESWSVPVAVLLVIPLGVLGTVTATTLAGFVNDIYFQVGLLTTIGL 932

Query: 733  SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
            S  + +++     +  +          +   +     L   V TS+A    VLP+A+   
Sbjct: 933  SAKNAILIV----EFAESGQRAGRPLLEAALEGARLRLRPIVMTSLAFVAGVLPLALSTG 988

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             G +      + +  G++   + +I +     + +  
Sbjct: 989  AGAASRREIGVSVIGGMLFGTALAILLVPLFFVLVRR 1025


>gi|262369363|ref|ZP_06062691.1| multidrug efflux protein AdeJ [Acinetobacter johnsonii SH046]
 gi|262315431|gb|EEY96470.1| multidrug efflux protein AdeJ [Acinetobacter johnsonii SH046]
          Length = 1059

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 61/554 (11%), Positives = 153/554 (27%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L      L    + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVVMLAGVLS-----LTTMPVAQYPTIAPPV-------------VTIAATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAQTVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASINLNFEQGIDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             + +  +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVKVTKSGASFMQVLAFYSPDGSLSGADINDYVNSNISEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP+++  L  T + ++      N        G        
Sbjct: 170 AGVGELQVFGGQ-YAMRIWLDPAKMNSLQVTPSDIAAAIRAQNAQVAVGQLGGAPSVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +     +        +       
Sbjct: 229 VLNATVNAQSML-------------QTPEQFKNIFLKNTSSGAQVRLSDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        + LR        + +          
Sbjct: 276 QFDSKFNGKAAGGVAIKLATGANALDTAAAVEKRLSELRKNYPNGLKDQLAYDTTPFIEL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIKSVVKTLIEAIILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL----DMGFSRAYSTIFDSNITALIA 473
             +VL IGL VD  I+V E +     +      +         S A   I        + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMVEEHLDPVAATEKSMKQISGALVGITSVLTAVFVP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
                   G   R F+IT+  ++++S+  A++   A+   +++       + N +   F 
Sbjct: 456 MAFFAGTTGVIYRQFSITLVTAMILSLIVALTFTPALCATLLKQHDPNKAESNNIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                + + +  ++
Sbjct: 516 RWFNSSFEKLSVKY 529



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 94/286 (32%), Gaps = 8/286 (2%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+   + +  +     L     FK        +   V LS V              + 
Sbjct: 222 APSVQGQVLNATVNAQSMLQTPEQFKNIFLKNTSSGAQVRLSDVARVELGSDNYQFDSKF 281

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                  +        +++     +E    ++ +  P                  I+  +
Sbjct: 282 NGKAAGGVAIKLATGANALDTAAAVEKRLSELRKNYPNGLKDQLAYDTTPFIELSIKSVV 341

Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +I + I + I +++  + W   +     + + +  T     +FG   N   + A++  
Sbjct: 342 KTLIEAIILVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTMFAMVLA 401

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV-YTSMAAFISVLPMAV 788
           IG  V+D +VV + +     +    +      +KS+ +  G  V  TS+      +PMA 
Sbjct: 402 IGLLVDDAIVVVENV--ERVMVEEHLDPVAATEKSMKQISGALVGITSVLT-AVFVPMAF 458

Query: 789 WGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + G   VI   F+I +   ++++   ++     +   +      N 
Sbjct: 459 FAGTTGVIYRQFSITLVTAMILSLIVALTFTPALCATLLKQHDPNK 504



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 72/244 (29%), Gaps = 13/244 (5%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            E         +        +         S      +E +  K+  +           + 
Sbjct: 810  EWTYGSPRLERYNGVSSVNIQGTPAPGVSSGDAMLAMEEIIGKLPSMGLQGFDYEWTGLS 869

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL----- 713
             +      +   + V+   I  L    +   W   +  +  + L I        L     
Sbjct: 870  LEERDSGNQTAPLLVLSMLIVFLCLAALYESWSIPVSVLLVVPLGILGAFALTWLGMIIK 929

Query: 714  --FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
                + FN+    A++ +IG S  + +++ +  ++   L        D    +    L  
Sbjct: 930  GDPNLSFNIYFQVAIVAVIGLSAKNAILIVEFAKE---LQEQGEDLFDATLHAAKMRLRP 986

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + T++A    VLP+A+    G     S    +  G++ +    IF      ++I     
Sbjct: 987  IIMTTLAFGFGVLPLALSTGAGAGSQHSVGFGVLGGVISSTLLGIFFIPVFFVWIRSIFK 1046

Query: 829  KNAR 832
               +
Sbjct: 1047 YKPK 1050


>gi|225851839|ref|YP_002732072.1| hydrophobe/amphiphile efflux protein [Brucella melitensis ATCC
           23457]
 gi|256264645|ref|ZP_05467177.1| acriflavin resistance protein [Brucella melitensis bv. 2 str. 63/9]
 gi|225640204|gb|ACO00118.1| transporter, hydrophobe/amphiphile efflux-1, HAE1 family protein
           [Brucella melitensis ATCC 23457]
 gi|263095014|gb|EEZ18722.1| acriflavin resistance protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326408334|gb|ADZ65399.1| hydrophobe/amphiphile efflux protein [Brucella melitensis M28]
 gi|326538049|gb|ADZ86264.1| transporter, hydrophobe/amphiphile efflux-1, HAE1 family protein
           [Brucella melitensis M5-90]
          Length = 1051

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 71/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P RL Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDRLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 82/266 (30%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+   + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLTFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIAAFFIPMFYSLIARKPPKK 1032



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 63/540 (11%), Positives = 140/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++T ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLTFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIAAFFIPMFYSLIARKPPKKH 1033


>gi|284052555|ref|ZP_06382765.1| preprotein translocase subunit SecF [Arthrospira platensis str.
           Paraca]
          Length = 304

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 67/256 (26%), Positives = 134/256 (52%), Gaps = 7/256 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + P++++ VR  L++  +G  S Q  D +     R                 ++  + 
Sbjct: 37  NCDGPIEINQVREVLQAQDLGSSSIQLLDKDPIQRDRQIVSVRTKNLNVDERTQLEAALR 96

Query: 644 EIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           E +          + VGP + R++   G+  ++++   + +Y+  RF++ +A+ A   L 
Sbjct: 97  EAIGVFDPLATQIDTVGPTLGRQIFTSGLKALLVAFAGITLYLTFRFQFDYAVFAFVALF 156

Query: 702 LDITKTLGFFALFGIEF----NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            D+  T+G F++FG+ F    +   + A+LT+IG+SVND VV+YDR+R+ +K      S 
Sbjct: 157 HDVILTMGVFSIFGLVFGLEADTLFLVALLTIIGFSVNDTVVIYDRIREILKQMP-DAST 215

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +++D ++N+TL RS+ T++   + +  + ++GG  +  FA+ +  G +  + SSIFIA+
Sbjct: 216 GEVVDNAVNQTLARSINTTVTTILPLFCIFLFGGETLKYFALTLIIGFIAGSYSSIFIAS 275

Query: 818 PILLFIYDWRAKNARI 833
            +L +  D +A  + I
Sbjct: 276 TLLGWWRDRQASKSTI 291


>gi|160876534|ref|YP_001555850.1| preprotein translocase subunit SecD [Shewanella baltica OS195]
 gi|160862056|gb|ABX50590.1| protein-export membrane protein SecD [Shewanella baltica OS195]
 gi|315268728|gb|ADT95581.1| protein-export membrane protein SecD [Shewanella baltica OS678]
          Length = 604

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 165/527 (31%), Positives = 276/527 (52%), Gaps = 34/527 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  ++  P  L  S+    PS +       I LGLDLRGG   +L+VD D       +
Sbjct: 94  TLVSSMVTEPKELTLSLASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGE 153

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
              D LR F++++ I   S+   Q N++ L+  D+  +  +   +               
Sbjct: 154 ALVDSLRQFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQ------- 206

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
               L  T    + I LSQ    ++ +  ++Q+++++R RI+++GI+E+ +QR G HRI 
Sbjct: 207 ----LSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGDHRIR 262

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           I+LPG QDP+  + ++G TA ++F +V               L D  G    V     + 
Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLNDKSGKPIYVSRTPVLG 317

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR--------- 301
           G H+  A A+         V+I+ D +G ++  E +R NIGKP+A               
Sbjct: 318 GDHIVDARASLGEMGM-AEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDELGKAK 376

Query: 302 ---VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               + +    Q+    + +I+G  T + A  LA +LRAGS+   + IVEER +G  LG+
Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
           ++I  G  A+  G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A LTLP I
Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG+VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STIFD+N T +I  VVL
Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +  G G ++GFA+T+GL +L SMFT I   RA++  +      + + 
Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 90/260 (34%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    +            +    ++ L       G    Q
Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDELGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I  G   + +     L+++ + ++  
Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID   +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  ++  +Y   A  
Sbjct: 581 TGIFASRALINLVYGRDASR 600


>gi|288803840|ref|ZP_06409266.1| HAE1 efflux family protein [Prevotella melaninogenica D18]
 gi|288333674|gb|EFC72123.1| HAE1 efflux family protein [Prevotella melaninogenica D18]
          Length = 1066

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 77/593 (12%), Positives = 172/593 (29%), Gaps = 45/593 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  IG+L      L    + +FPS  P              +++   +
Sbjct: 7   RRPVLSIVVSLVIAFIGILS-----LSNLPITQFPSISPPK-----------VNVI--AN 48

Query: 62  EDDFVNGF-LQMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N   ++     L   L    G+         +   ++ + F         A  V 
Sbjct: 49  YPGANNELLVKSVIIPLEQALNGIPGMKYIESNAGNDGEAELNVVFKLGTDPNVDAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL  +  +  +  + E+   ++      D                   ++  
Sbjct: 109 NRVSSATNKLPAEVIREGVKISREEPNILMYINLYSDDPKVDQGFLYNYFDINISPELLR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P ++     +T  +S      N        G    +  
Sbjct: 169 VDGVGDLDILGTRNYAMRVWLHPDKMIAYGLSTDDVSDALEDQNIEVSPGKLGESGGQCP 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++     +                +    I                ++     V
Sbjct: 229 QVKEYVLKYPGRYTTED-------------EYKNIIIKSNKDGNIVRLKDIADVHLGSEV 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +    I       A L+          +         
Sbjct: 276 YDIYSTFNGRPSAAVTLKQAYGSNARNVITKVKDAMAHLQKDMPKGMHYEISYDVSRFLD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+F+ +   +  ++   ++ ++++ +   + L   TL + S
Sbjct: 336 ASIEKVIHTLFEAFILVAIVVFIFLGDWRASIIPIMAVPISLLGSFIAMMLFNITLNMIS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +V+ IG+ VD  I+V E +  E  +N+ S   + +         I   ++      +
Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVEISRNKLSPVEATEKAMKEISGAIIAISLVMASVFI 455

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F G   G   R F+ITM  SIL S F A+++  A+   I+  ++   + +  + R  
Sbjct: 456 PVAFMGGPEGMFYRQFSITMASSILFSGFVALTLTPALCALILTKEQENHVKLGFIGRVL 515

Query: 533 LIPDCIAIQFMRARFWGVG-----ISILFSICSICLLFTHGLNYGIDFKGGIQ 580
              +       R     +       S+   +  +     + +N G+      Q
Sbjct: 516 QRFNAKFDSGSRKYERLIQHTVKKKSLTIILILVFCGLAYWINMGLPSGFIPQ 568



 Score = 97.1 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 105/284 (36%), Gaps = 10/284 (3%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              +                   + + +N+  ++  ++   +     ++           
Sbjct: 227 CPQVKEYVLKYPGRYTTEDEYKNIIIKSNKDGNIVRLKDIADVHLGSEVYDIYSTFNGRP 286

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVI 674
              +  +         V+  VK  +  +           +   +SR L   I K I  + 
Sbjct: 287 SAAVTLKQAYGSNARNVITKVKDAMAHLQKDMPKGMHYEISYDVSRFLDASIEKVIHTLF 346

Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            + I + I ++I    W  ++  I  + + +  +     LF I  N+ ++ A++  IG  
Sbjct: 347 EAFILVAIVVFIFLGDWRASIIPIMAVPISLLGSFIAMMLFNITLNMISLFALVMAIGIV 406

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
           V+D +VV + +  N+++    +S  +  +K++ E  G  +  S+      +P+A  GG  
Sbjct: 407 VDDAIVVIEAV--NVEISRNKLSPVEATEKAMKEISGAIIAISLVMASVFIPVAFMGGPE 464

Query: 793 --VIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
                 F+I MA  I+ +   ++ +   +  L +   +  + ++
Sbjct: 465 GMFYRQFSITMASSILFSGFVALTLTPALCALILTKEQENHVKL 508



 Score = 44.3 bits (102), Expect = 0.096,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 73/224 (32%), Gaps = 12/224 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + V  S   S  ++  + +I+  N                   A   + E+ ++ + +  
Sbjct: 796  QMVPYSDFMSLSKTYGMSEITRHNLYNSSEVTGAQAPGYSSGQALQAIQEVAQRSLPK-G 854

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                         +         IV  ++  + + + +  +++ +   L  I  L + I 
Sbjct: 855  YDYDWAGISKDEAEQGN----TAIVIFVVCLVFVYLILAAQYENFLLPLPVIIFLPVGIF 910

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                F    G+E N+ A  A++ LIG    + V++ +     ++              + 
Sbjct: 911  GAFLFLKACGLENNIYAQIALVMLIGLLGKNAVLMVE---YAVQRKNAGERISQAAISAA 967

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIV 806
                   + TS+A    ++P+    G   I   +       G+V
Sbjct: 968  IARFRPILMTSIAFIAGLIPLVFASGAGAIGNRTIGTAAVGGMV 1011


>gi|300937393|ref|ZP_07152228.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 21-1]
 gi|300457567|gb|EFK21060.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 21-1]
          Length = 1034

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 180/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINDKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           ++           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 VNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 75/200 (37%), Gaps = 6/200 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
              + ++    ++    P               +  I + +  +  + + + + +++  +
Sbjct: 301 DTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQ 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + +  T    A FG   N   +  ++  IG  V+D +VV + +    
Sbjct: 361 NMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +  ++  +KS+++  G  V  +M      +PMA +GGS       F+I +   +
Sbjct: 419 VMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAM 478

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++   ++ +   +   +  
Sbjct: 479 ALSVLVALILTPALCATLLK 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|251772533|gb|EES53099.1| SecF export membrane protein [Leptospirillum ferrodiazotrophum]
          Length = 315

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 152/301 (50%), Gaps = 5/301 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH---GLNYGIDFKGGIQLGVLANR 587
            F +    +I FM  +   +G+S L  +  +  L        N GIDF GG  L V  +R
Sbjct: 1   MFELIRNPSIDFMGKKKISLGLSSLLVLIGLFALLQIARGQANLGIDFTGGTALLVHFDR 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P  +S VR+ L          QN +G  +  +R++ +   + + T  L  +        P
Sbjct: 61  PEPISEVRAVLSGNGFSGAQIQNVNGTSDLFIRVKARSESAHSVTESLLALLHGHFAGNP 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
           L+  Q+ E +GP I  EL  K +V +  S +  ++YI +RF++ F L A  +   ++   
Sbjct: 121 LTIRQSIE-IGPTIGSELAGKALVAIFFSLVGFILYIAVRFEFRFGLAAAISTFHNVIAV 179

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG   L  +E NL  V ++LTL GYS+ D VVV+DR+R+ M+      +   LI+  IN+
Sbjct: 180 LGILYLLHVEINLLIVTSLLTLAGYSLTDTVVVFDRIREQMRRSVR-QTPEALINSGINQ 238

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            L R+V  S+   + +  + + GG VI  F++ +  G++V   +SIF+A+P+LL +   R
Sbjct: 239 VLSRTVVVSLTVELVLFALLIGGGPVIHDFSLALFIGVLVGTYASIFVASPLLLILPGRR 298

Query: 828 A 828
            
Sbjct: 299 K 299


>gi|295097755|emb|CBK86845.1| The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile
           Efflux-1 (HAE1) Family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 1037

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 71/684 (10%), Positives = 184/684 (26%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G L  L     +  + ++P+  P                     
Sbjct: 7   QRPVFAWVLAIILMIAGGLAIL-----KLPVAQYPTIAPPAV---------AVTATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     N  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGNVTITLTFESGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D       + S  +     D I  +   
Sbjct: 113 LAMPLLPQEVQQQGIGVEKSSSSFLLVAGFVSDNKNLTQDDISDYVASNVKDAISRTSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + + +   T   +       N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDSNAMNKYQLTPLDIINQLKTQNDQIAAGQLGGTPSVPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KSPEEFGRVTLKVNQDGSMVHLKDVARIELGGENYNMV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                +   T        A L+         +           S  
Sbjct: 279 TKINGQAATGLGIKLATGANALDTAAAIKSKLAQLQPFFPQGLKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     +++     +      +    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMVEDKLPPKEATQKSMEQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526
           FGG      R F++T+  ++ +S+  A+ +  A+   +           +       +  
Sbjct: 459 FGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCATLLKPVSSEHHEKKGGFFGWFNAL 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    + ++    +   + +   I+    ++  L         + +G     V   
Sbjct: 519 FDKSVEHYSNSVSGILRKTGRYLLVYVIIVGGMAVLFLRLPSSFLPEEDQGVFMTMVQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +Q   ++ +  + E  F V      G           +K       
Sbjct: 579 AGATQMRTQQVLDQVQDYYLTKEKANVESVFTVNGFSFSGQGQNSGIAFVSLKPWEERPG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             + ++       K   ++    +
Sbjct: 639 KENGVEAIVSRATKAFSQIKDGLV 662



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 83/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  ++  +        L        +++     ++    ++    
Sbjct: 258 SMVHLKDVARIELGGENYNMVTKINGQAATGLGIKLATGANALDTAAAIKSKLAQLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + + + + +++  +     L     + + + 
Sbjct: 318 PQGLKVVYPYDTTPFVKISIHEVVKTLFEAIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEDKLPPKEATQKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  +M      +PMA +GGS       F++ +   + ++   ++ +   +   
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 69/193 (35%), Gaps = 7/193 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G+S       E +    +    L +    +  G      L       +  IS I + + +
Sbjct: 828  GESAPGKSTGEAMALMESLASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L   ++ G+  ++     +LT IG S  + +++ + 
Sbjct: 888  AALYESWSIPFSVMLVVPLGVIGALLAASMRGLNNDVYFQVGLLTTIGLSAKNAILIVEF 947

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  M          +   ++    L   + TS+A  + V+P+ +    G     +    
Sbjct: 948  AKDLMDKEGKG--IIEATLEASRMRLRPILMTSLAFILGVIPLVISSGAGSGAQNAVGTG 1005

Query: 801  MAFGIVVAASSSI 813
            +  G++ A   +I
Sbjct: 1006 VMGGMLSATLLAI 1018


>gi|83955082|ref|ZP_00963738.1| Cation/multidrug efflux pump, RND family protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83840411|gb|EAP79584.1| Cation/multidrug efflux pump, RND family protein [Sulfitobacter sp.
           NAS-14.1]
          Length = 1037

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 78/684 (11%), Positives = 187/684 (27%), Gaps = 40/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  IG+L  L        + ++P   P +                    
Sbjct: 8   RPIFAWVISIFIMGIGVLSIL-----NLPVAQYPQIAPPSV---------AVRASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        S        ITL+F      +    +V   L  
Sbjct: 54  AQTVANTVTQVIEQQMTGLDGLRYISSSSTSEGGASITLTFETGTDVDIAQVQVQNKLSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            ++ L    ++  +         +++     +     A +    +    +++I   E   
Sbjct: 114 ASALLPEPVQRQGITVQKSSAGFLMVIGLIGENGKYDATDLGDYMQSNLVNEISRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T + +       N       FG R   +      
Sbjct: 174 SVQVFGAQ-YAMRIWLDPVKLAAFELTPSDIVAAVSAENAQISAGSFGSRPAVEGQALNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                     +   E             +           
Sbjct: 233 TITAQSLLT-------------SPEDFRQIVLRAETDGGLVLLNDVARVEIGSESYATIS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +   T          L A        +V          S   
Sbjct: 280 RYNRNAATGMAVSLAPGANALDTAAAVEQRIEELSAFFPEGVSYVVPFDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VIKTLIEAIVLVFIVMYLFLQNIRATLIPTLAVPVVLLGTFGVLAAFGFSINTLTMLGMV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +     + +     +      +     I  + + + +   + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEHIGPLEATRKSMDQITGALIGIAVVLSAVFVPMAFF 459

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDINPLSR 530
            G      + F+IT+  ++ +S+  A+++  A+   +++    +         +      
Sbjct: 460 PGSTGVIYKQFSITIISAMTLSVVVALTLTPALCASLLKQGSHEKRRGFFGLFNRGFDKT 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  +     R    G+    + +      + T       + +G +   V A     
Sbjct: 520 LGGYTGTVGWLVRRPLRVGLVYLAIIAAMVFLFMRTPAGFLPAEDQGTLFTLVQAPTGAT 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  ++ ++   +  +    E  F V      G       V   +K          +
Sbjct: 580 AERTLEVIKQVENYYLENEGDVVESVFGVVGFSFAGQGQNLGLVFVRLKDWEQRTEAAQS 639

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
           +Q           ++    +  ++
Sbjct: 640 VQAVAGRAFGAFSQIQDAMVFPIV 663



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 87/248 (35%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +      +        +        +++     +E   ++++   P 
Sbjct: 260 VLLNDVARVEIGSESYATISRYNRNAATGMAVSLAPGANALDTAAAVEQRIEELSAFFPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + I  +I + + + I +++  +     L     + + +  T
Sbjct: 320 GVSYVVPFDTTPFVKISIEEVIKTLIEAIVLVFIVMYLFLQNIRATLIPTLAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A FG   N   +  ++  IG  V+D +VV + +     +    I   +   KS+++
Sbjct: 380 FGVLAAFGFSINTLTMLGMVLAIGLLVDDAIVVVENV--ERIMEQEHIGPLEATRKSMDQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 ITGALIGIAVVLSAVFVPMAFFPGSTGVIYKQFSITIISAMTLSVVVALTLTPALCASLL 497

Query: 825 DWRAKNAR 832
              +   R
Sbjct: 498 KQGSHEKR 505



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 50/135 (37%), Gaps = 9/135 (6%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + + I  TL    L G E  +     +LT++G +  + +++ +  R   
Sbjct: 889  SWSIPFAVMLAMPIGILGTLTGAYLGGFENGVFFQVGLLTVVGLTGKNAILIVEFARD-- 946

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                   S       +  +     + TSMA  + VLP+ +  G+        +  G++  
Sbjct: 947  -RRQEGESIFGAAVDAARQRFRPIIMTSMAFSLGVLPLVLSTGAG-SGGRTAIGAGVLAG 1004

Query: 809  ASSSIFIAAPILLFI 823
                  IAA +L  +
Sbjct: 1005 T-----IAATVLGVL 1014


>gi|83748929|ref|ZP_00945939.1| Transmembrane drug efflux protein [Ralstonia solanacearum UW551]
 gi|83724428|gb|EAP71596.1| Transmembrane drug efflux protein [Ralstonia solanacearum UW551]
          Length = 1051

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 82/684 (11%), Positives = 181/684 (26%), Gaps = 39/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L           + ++PS  P                      
Sbjct: 8   RPIFAWVLAIIVMLAGALSIA-----TLPIAQYPSIAPPAV---------AITATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    L        +     +  ITL+F +    +    +V   L  
Sbjct: 54  AKTLEDTVTQIIEQKMKGLDHLSYMASTSESSGSVTITLTFENGTDPDTAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      + +     +    +  + S  +     D I   E   
Sbjct: 114 ATPLLPQEVQQQGVQVTKSATNFLNVLAFTSEDGSMNGSDLSDYVAANVQDAISRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G      +     
Sbjct: 174 DTTLFGSQ-YAMRIWLDPNKLSNFSLTPLDVKTAIQAQNAQVSAGQLGAMPALGNQQINA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +   +    +        I           
Sbjct: 233 TITSQTRL-------------KTVEEFGNILLRTQTDGAQVRLRDVARIELGSENYNTVG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T++      A L     P                S   
Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFPPGMKVQKPYDTTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++  +V
Sbjct: 340 VVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAACGFTINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQITGALVGVALVLAAVFVPMAFF 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F+IT+  ++ +S+  A+ +  A+   +     +K +              
Sbjct: 460 KGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCATL-----LKPVKKGHAQATTGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R      GI       S   +  +G+ + +   G ++L V      D   +   
Sbjct: 515 FNRTFDRGNHRYQGIVRHMLGKSRRYMAVYGVLFALVVVGFMKLPVGFLPDEDQGTLF-V 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L  L  G  + +  D  +           ++V+    +       +              
Sbjct: 574 LAQLPPGATNARTEDVIRQVEHHFLVDQKEAVSGVFSVAGFSFAGSGQNMGFAFVKLRPW 633

Query: 658 GPKISRELIRKGIVGVIISAIAML 681
             +    L   G+V       A L
Sbjct: 634 NERKGEALSVNGVVAKAFGFFATL 657



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 85/246 (34%), Gaps = 6/246 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +  +   +        L        +++   + ++    ++    P
Sbjct: 259 QVRLRDVARIELGSENYNTVGRYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          R  I + +  ++ +   + + +++  + +   L     + + +  
Sbjct: 319 PGMKVQKPYDTTPFVRISIEEVVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G  A  G   N   + A++  IG  V+D +VV + +     +    +  ++   KS+ 
Sbjct: 379 TFGVLAACGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSMG 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  V  ++      +PMA + GS       F+I +   + ++   ++ +   +   +
Sbjct: 437 QITGALVGVALVLAAVFVPMAFFKGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCATL 496

Query: 824 YDWRAK 829
                K
Sbjct: 497 LKPVKK 502



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 60/170 (35%), Gaps = 11/170 (6%)

Query: 668  KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFN-LTAV 723
             G   ++ +   + +++    +   W      I  + L +   L   A+   + N +   
Sbjct: 869  TGQTTLLYTLSILFVFLCLAALYESWAIPFSVIMVVPLGVLGAL-IGAILTWKMNDVYFQ 927

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              +LT IG +  + +++ +  +    L+   +   +    +    L   + TS+A  + V
Sbjct: 928  VGLLTTIGLASKNAILIVEFAKD---LHAQGMRLAEAAMTAARMRLRPILMTSLAFILGV 984

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            LPM      G     +    +  G++     +IF      + +     + 
Sbjct: 985  LPMVTGSGAGAGAQHALGTAVIGGMLSGTVLAIFFVPLFFVLVRGLFRRK 1034


>gi|108761223|ref|YP_633187.1| HAE1 family efflux transporter [Myxococcus xanthus DK 1622]
 gi|108465103|gb|ABF90288.1| efflux transporter, HAE1 family, inner membrane component
           [Myxococcus xanthus DK 1622]
          Length = 1048

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/537 (12%), Positives = 156/537 (29%), Gaps = 32/537 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + ++   ++  +GL+       P   + ++P   P                     
Sbjct: 8   RRPVFAIVCSILLTLVGLIAI-----PTLPIAQYPDLAPPQVT---------VTSTYVGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
             + V   + +  ++  + ++       +      ++IT++F  +R  E  A  V   + 
Sbjct: 54  SAEVVESAVTIPLEQELNGVEGMRYITSTSSNDGTSQITITFEATRDIEVAAVDVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L     +  +V        ++      +     A   S        D I      
Sbjct: 114 RAAARLPSQVNQTGIVVNKASSQMLLTVGLFSEDNRYDAKFLSNYADVSLKDAIKRVPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP+ L +   T   ++      N        G     +    Q
Sbjct: 174 GDVRIFGERKFSMRLWLDPTELARRKLTPQDVTRALQEQNLQVAAGQIGQPPSTEDQPYQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +              +  +    +   +             +          
Sbjct: 234 IAVRARGRL-------------VEPAEFGDIVLMRDTDGTSIRVKDVGRVELGAENYGSV 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +     +        L     P            A   S +
Sbjct: 281 LRFNGKTGVGLGIFQLPTANALDVRDGVYAELERLSKQFPPGMQFQTGTDTTLAVRASIN 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+F+ +   +  L+  F++ +++I T A + L+G ++   ++ G+
Sbjct: 341 EVIKTLVEAIVLVILVIFLFLHGWRSVLITAFTLPVSLIGTFAFVHLMGFSINTLTLFGL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIATVV 476
            L  GL VD  I+V E I     + + S   +   G      A   I    +   +   +
Sbjct: 401 TLATGLVVDDAIVVIENIERLMVERRLSPVQAAREGMKEVTGAVIAISVVLVAVFVPVAL 460

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
                G   R FA+T+  S+ +S F A+++  A+   ++++ +             L
Sbjct: 461 FPGTTGAIYRQFALTIAASVALSTFCALTLTPALSAKMLKHHEGPKWVFFRWVDTVL 517



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 75/190 (39%), Gaps = 8/190 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             LE + K+    +   T  +T +       E+I+  +  +++  + + +++     W  
Sbjct: 310 AELERLSKQFPPGMQFQTGTDTTLAVRASINEVIKTLVEAIVLVILVIFLFL---HGWRS 366

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L    TL + +  T  F  L G   N   +  +    G  V+D +VV + +     +  
Sbjct: 367 VLITAFTLPVSLIGTFAFVHLMGFSINTLTLFGLTLATGLVVDDAIVVIENI--ERLMVE 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +S      + + E  G  +  S+      +P+A++ G+       FA+ +A  + ++ 
Sbjct: 425 RRLSPVQAAREGMKEVTGAVIAISVVLVAVFVPVALFPGTTGAIYRQFALTIAASVALST 484

Query: 810 SSSIFIAAPI 819
             ++ +   +
Sbjct: 485 FCALTLTPAL 494



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 57/147 (38%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  I ++ L I   LG     G   ++     ++ L+G +  + +++ +   + +
Sbjct: 890  SFSLPLVIIFSVPLAIMGALGLQLARGFANDVFCQVGLVMLVGLASKNAILIVE-FAEQL 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +      S  D + ++    L   + TS+A  + V+P+      G +   S    +  G+
Sbjct: 949  REG--GKSAIDAVVEAAEVRLRPILMTSIAFLLGVVPLMTASGAGAASRNSLGTAVFGGM 1006

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   +      + + +   R    R
Sbjct: 1007 LVSTVVNFVFIPGLYVLMQKLRGDAKR 1033


>gi|37676738|ref|NP_937134.1| putative acriflavin resistence protein [Vibrio vulnificus YJ016]
 gi|37201281|dbj|BAC97104.1| putative acriflavin resistance protein [Vibrio vulnificus YJ016]
          Length = 1050

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 76/692 (10%), Positives = 184/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAIALAV-----LPVAEYPKISPP-------------SVSVTAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ +       N        G     + 
Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYSALSQQNVQVAAGRIGAAPYNNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANPDGSSVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGNGKFRGRDASIVALSLQSDANALESGQAVMELLERLSGNFPEGMAYETSYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMLATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  M        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +   +L    G   R FA+T+ +S++IS   A+++  A+   +            K+ + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLAPALCSLVLKQGGENTANWFKTFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  +     T       + KG + + V  
Sbjct: 517 GLERVTERYGQVAGFLVKKSLLLVAFFMVAVAAVAFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     +   +       
Sbjct: 577 PDSASLSRTEEVTNHLLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +   +  +I+     +    V+ + 
Sbjct: 637 GLN-GNHSANAIAQRINGRAAMELPQAVVFAM 667



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 77/197 (39%), Gaps = 7/197 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A   +LE +     E +   T  +T +   +  + +++  I  +++      +++ 
Sbjct: 303 ESGQAVMELLERLSGNFPEGMAYETSYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLG 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L  +  + + +  T       G   N   +  ++  IG  V+D ++V + + 
Sbjct: 363 ---SARATLIPVVAIPVSLIGTFAVMLATGFTINTVTLFGLILAIGIVVDDAILVIENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
                   SIS R     ++ E  G  + +++      LP+A+  G        FA+ + 
Sbjct: 419 DTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTIC 478

Query: 803 FGIVVAASSSIFIAAPI 819
             +V+++ +++ +A  +
Sbjct: 479 ISVVISSINALTLAPAL 495



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 48/407 (11%), Positives = 106/407 (26%), Gaps = 23/407 (5%)

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LL      P + G+ +  G +  +    +       + +     +   G   A +     
Sbjct: 592 LLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRNGLNGNHSANAIAQRI 651

Query: 467 NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
           N      +   V+F  G  AV G     G   ++      S   +   M   I    +  
Sbjct: 652 NGRAAMELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMGEMIQAANQAP 711

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
            I     +    +P                            L +  +N    F    ++
Sbjct: 712 EIAYTFSTFRANVPHYYVDIDREKAQQLGIPLSSIFQTLQGNLGSMYVNDFTMFGKNFRV 771

Query: 582 GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            + A+              V  S       S  +        D    + +          
Sbjct: 772 TMQADSEHRSSMDDLSRFHVRTSSGEMVPLSTLLSYEQVFEPDVAWRYNMYRSAIIQGQP 831

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
           A           +  I      Q        ++ + +  G   +   +   + IY   + 
Sbjct: 832 APGYSSGDAIAAMERIAAELLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892 QYESWTIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
              +     ++  +   +           TS +  + + P+    G+
Sbjct: 952 --QQREEKEVAIDEAAVQGGKLRFRAVNMTSWSFILGIFPLIFAAGA 996


>gi|89092657|ref|ZP_01165610.1| Hydrophobe/amphiphile efflux-1 [Oceanospirillum sp. MED92]
 gi|89083169|gb|EAR62388.1| Hydrophobe/amphiphile efflux-1 [Oceanospirillum sp. MED92]
          Length = 1037

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 68/584 (11%), Positives = 171/584 (29%), Gaps = 39/584 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  ++   G L  L        + +FP   P               + ++   
Sbjct: 9   RPKFALVISIVLMIAGGLAIL-----SLPVAQFPDITPPK-------------VQVQAKY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S +   +    + ++FA     +  A  V  
Sbjct: 51  PGANAEVVEQAVATPIEAQVNGVDNMLYMSSKSNNDGSYSLDITFAVGTDPDQAAINVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L  +  +  + T  +    +++      +     +  S        D +   
Sbjct: 111 RVALAESSLPQEVVRQGVTTRKQATNMLLVINLFSPEGTYDELFLSNYATLYVQDALARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      +   +    DP RL+ L  + + +S      N      + G   L  + 
Sbjct: 171 NGVGSASQFSPMDYGMRVWLDPDRLKALNMSPSDISNAISQQNIQASVGIIGQPPLTQNQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +  +              +    I                 +       
Sbjct: 231 QFQYNLRAKGRLESVE-------------EFENIILRTGENGASVRLRDVARVELGSQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               ++                +     +        L           +      +   
Sbjct: 278 SASSIMNGNQAATIAIYQSPGANALDVADQVYAELERLSQRFPDDMDYAILYDTTLSVKA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   LV++V F+ +   +  L+   +I +++I T A+LS+LG ++   S+
Sbjct: 338 SLQEVVETLFITFALVVLVTFLFLADWRATLIPSATIPVSLIATFAVLSVLGFSINTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IG+ VD  I+V E ++   ++  S   +  +        +  + +  L   V +
Sbjct: 398 FALILAIGIVVDDAIVVVENVKRHMQEGLSAKEATAVSMKEVIGPVIATTLVLLAVFVPV 457

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G     FA+T+ +++  S   A+++  A+   +++  +          +    
Sbjct: 458 AFMPGITGKLYTEFAVTISVAVCFSSLNALTLSPALCGLLLKPAQEPKGLFRKFDQLISW 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                +  +      + +S+         ++         F   
Sbjct: 518 TRRGYVNKVSFLNKRLLLSMGLLAAMGGGVYHMFSTTPTGFLPY 561



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 75/203 (36%), Gaps = 10/203 (4%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             ++E + K+      +     T     +    +I    + ++ +    L  +     W  
Sbjct: 835  ALMEKLAKETLPDGYVLEWTGTTQQEQESGGYVIIIMSLAILFAY---LFLVAQYESWSI 891

Query: 693  ALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  + ++ + +    L  + + G+  NL A   ++ LIG +    +++ +  +   +L 
Sbjct: 892  PMAVMLSITVALLGAILPLWLIPGLTNNLYAQIGIVMLIGLASKSAILIVEFAK---QLR 948

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                   +  +++ N      + T+ +  + VLP+      G +   S    +  G+++A
Sbjct: 949  EQGKGIIEAANEAANLRYRAVLMTAFSFILGVLPLVTASGAGAASRISIGFVVLGGMLLA 1008

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
                IF    + + +   R K  
Sbjct: 1009 TIVGIFFIPSLFVAMQSLREKLK 1031



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 85/208 (40%), Gaps = 9/208 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 LE + ++  + +  + + +T +      +E++    +   +  +   +++    
Sbjct: 306 DQVYAELERLSQRFPDDMDYAILYDTTLSVKASLQEVVETLFITFALVVLVTFLFLA--- 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    T+ + +  T    ++ G   N  ++ A++  IG  V+D +VV + ++   
Sbjct: 363 DWRATLIPSATIPVSLIATFAVLSVLGFSINTISLFALILAIGIVVDDAIVVVENVK--- 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +     +S ++    S+ E +G  + T++      +P+A   G        FA+ ++  +
Sbjct: 420 RHMQEGLSAKEATAVSMKEVIGPVIATTLVLLAVFVPVAFMPGITGKLYTEFAVTISVAV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++ +++ ++  +   +     +   +
Sbjct: 480 CFSSLNALTLSPALCGLLLKPAQEPKGL 507


>gi|320158840|ref|YP_004191218.1| RND efflux system inner membrane transporter CmeB [Vibrio
           vulnificus MO6-24/O]
 gi|319934152|gb|ADV89015.1| RND efflux system inner membrane transporter CmeB [Vibrio
           vulnificus MO6-24/O]
          Length = 1050

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 76/692 (10%), Positives = 184/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAIALAV-----LPVAEYPKISPP-------------SVSVTAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ +       N        G     + 
Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYSALSQQNVQVAAGRIGAAPYNNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANSDGSSVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGNGKFRGRDASIVALSLQSDANALESGQAVMELLERLSGNFPEGMAYETSYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMLATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  M        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +   +L    G   R FA+T+ +S++IS   A+++  A+   +            K+ + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLAPALCSLVLKQGGENTANWFKTFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  +     T       + KG + + V  
Sbjct: 517 GLERVTERYGQVAGFLVKKSLLLVAFFMVAVAAVAFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     +   +       
Sbjct: 577 PDSASLSRTEEVTNHLLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +   +  +I+     +    V+ + 
Sbjct: 637 GLN-GNHSANAIAQRINGRAAMELPQAVVFAM 667



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 77/197 (39%), Gaps = 7/197 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A   +LE +     E +   T  +T +   +  + +++  I  +++      +++ 
Sbjct: 303 ESGQAVMELLERLSGNFPEGMAYETSYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLG 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L  +  + + +  T       G   N   +  ++  IG  V+D ++V + + 
Sbjct: 363 ---SARATLIPVVAIPVSLIGTFAVMLATGFTINTVTLFGLILAIGIVVDDAILVIENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
                   SIS R     ++ E  G  + +++      LP+A+  G        FA+ + 
Sbjct: 419 DTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTIC 478

Query: 803 FGIVVAASSSIFIAAPI 819
             +V+++ +++ +A  +
Sbjct: 479 ISVVISSINALTLAPAL 495



 Score = 48.1 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 48/407 (11%), Positives = 106/407 (26%), Gaps = 23/407 (5%)

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LL      P + G+ +  G +  +    +       + +     +   G   A +     
Sbjct: 592 LLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRNGLNGNHSANAIAQRI 651

Query: 467 NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
           N      +   V+F  G  AV G     G   ++      S   +   M   I    +  
Sbjct: 652 NGRAAMELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMGEMIQAANQAP 711

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
            I     +    +P                            L +  +N    F    ++
Sbjct: 712 EIAYTFSTFRANVPHYYVDIDREKAQQLGIPLSSIFQTLQGNLGSMYVNDFTMFGKNFRV 771

Query: 582 GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            + A+              V  S       S  +        D    + +          
Sbjct: 772 TMQADSEHRSSMDDLSRFHVRTSSGEMVPLSTLLSYEQVFEPDVAWRYNMYRSAIIQGQP 831

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
           A           +  I      Q        ++ + +  G   +   +   + IY   + 
Sbjct: 832 APGYSSGDAIAAMERIAAELLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892 QYESWTIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
              +     ++  +   +           TS +  + + P+    G+
Sbjct: 952 --QQREDKEVAIDEAAVQGGKLRFRAVNMTSWSFILGIFPLIFAAGA 996


>gi|283835635|ref|ZP_06355376.1| multidrug resistance protein MdtF [Citrobacter youngae ATCC 29220]
 gi|291068849|gb|EFE06958.1| multidrug resistance protein MdtF [Citrobacter youngae ATCC 29220]
          Length = 1038

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 68/576 (11%), Positives = 153/576 (26%), Gaps = 43/576 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +  L        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMFTGGIAIL-----NLPVAQYPQIAPPT-------------ITISAAY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          I L+F      +    +V  
Sbjct: 50  PGADAKTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASIILTFKTGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    D       + +  +     D +  +
Sbjct: 110 KLQLAMPSLPQEVQQQGISVDKSSSNILMVAGFISDNNSLSQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +   T   +     + NN   G   G        
Sbjct: 170 PGVGSVQLFGSQ-YAMRIWLDPQKLDKYNLTPQDVIAQLKVQNNQISGGQLGGMPQSADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +               T +        +    +        I       
Sbjct: 229 QLNASIIVQTRL-------------QTTDEFGKIFLKVQQDGSQVLLRDVARIELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T +        L A        +           
Sbjct: 276 ATVARYNGKPAAGIAIKLAAGANALQTSQAVKQELNRLSAWFPASMKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L + G ++   ++
Sbjct: 336 SIQGVFHTLIEAIILVFLVMYLFLQSFRATLIPTIAVPVVILGTFAILDVAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM----GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     + +    +          RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERIIAEERLSPKAATHKAMGQLQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
              +    G   R F+IT+  S+L+S+F A+S+  A+   +      +  +         
Sbjct: 456 MAFMSGATGEIFRQFSITLISSMLLSVFVAMSLTPALCAMLLKPHEGEKANAHFLFTRFN 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
             +  C        R           +  +      
Sbjct: 516 HFMEKCTHHYTNSTRRLLHCTGRYMVVYLVIGAGMM 551



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 81/244 (33%), Gaps = 8/244 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  ++ ++    +++   
Sbjct: 258 SQVLLRDVARIELGAENYATVARYNGKPAAGIAIKLAAGANALQTSQAVKQELNRLSAWF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P S                I+     +I + I + + +++    +   L     + + I 
Sbjct: 318 PASMKTVYPYDTTPFIEISIQGVFHTLIEAIILVFLVMYLFLQSFRATLIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     + G   N   +  ++  IG  V+D +VV + +     +    +S +    K++
Sbjct: 378 GTFAILDVAGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERIIAEERLSPKAATHKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            + L R++        +V     +     G +   F+I +   ++++   ++ +   +  
Sbjct: 436 GQ-LQRALVGIAVVLSAVFMPMAFMSGATGEIFRQFSITLISSMLLSVFVAMSLTPALCA 494

Query: 822 FIYD 825
            +  
Sbjct: 495 MLLK 498



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 65/175 (37%), Gaps = 6/175 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                     +   +  +   IS I + + +   ++ W      +  + + +   L    L
Sbjct: 857  WTGLSYQEAQSTNQAPMLYGISLIVVFLALAALYESWSIPFSVMLVVPIGVVGALLATDL 916

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+  ++     +LT +G S  + +++ +   + M+         +   ++    L   +
Sbjct: 917  RGLSNDVYFQVGLLTTMGLSAKNAILIVEFAVEIMQKEGKK--PLEAAVEAAQMRLRPIL 974

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             TS+A  + V+P+A+    G     +    +  G++ A   +I+      + + +
Sbjct: 975  MTSLAFILGVIPLAISHGAGSGAQNAVGTGVIGGMLAATVLAIYFVPLFFVLVEN 1029


>gi|319787466|ref|YP_004146941.1| protein-export membrane protein SecF [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465978|gb|ADV27710.1| protein-export membrane protein SecF [Pseudoxanthomonas suwonensis
           11-1]
          Length = 320

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 159/299 (53%), Gaps = 5/299 (1%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +     IP    I FM+ R+  + I+ L  + SI  +   G NY +DF GG  + V  
Sbjct: 1   MNIFPLSFIPHEPRIDFMKMRWVAIVIAALLFVGSIAGI-VKGFNYALDFTGGTVVEVRF 59

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG--DSVAQTRVLEMVKKKIT 643
            +   +  VR  L +        Q+F    + LVRLQ + G   + A  R  + V   ++
Sbjct: 60  AQSTPVDQVRERLAAAGYDGAQVQSFGSGSDVLVRLQPRDGETTTDANNRTAQDVLAAVS 119

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                +T+  TE VGP++ REL   G+   I   +  LIYI  RF++ FA+ A  T + D
Sbjct: 120 TAENPATLLRTEFVGPQVGRELALNGLYAAIFVVVGFLIYIGFRFEFKFAVSATLTTMFD 179

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +    G+FA  G++F+LT +A +L ++G+S+ND +VV+DR+R+N +         ++ ++
Sbjct: 180 VLVVAGYFAWSGLDFDLTVLAGLLAVMGFSINDTIVVFDRVRENFRTL--RAEPNEIFNR 237

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           SIN+TL R++ TS+  F+SVL + ++GG  +   A+    G VV   SSIF+A P+L  
Sbjct: 238 SINQTLSRTIITSVVFFLSVLALYLYGGGSLEGLALSQMIGAVVGTLSSIFLACPLLTL 296


>gi|262371897|ref|ZP_06065176.1| acridine efflux pump AdeY [Acinetobacter junii SH205]
 gi|262311922|gb|EEY93007.1| acridine efflux pump AdeY [Acinetobacter junii SH205]
          Length = 1057

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 62/529 (11%), Positives = 149/529 (28%), Gaps = 41/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LTKMPVAQYPTIAPPT-------------VTISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAQTVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASINLNFEQGIDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +           A +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVRVTKSGASFMQVVAFYSPDGSLPASDIKDYVNSNISEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N        G        
Sbjct: 170 AGVGEVTVFG-GSYAMRIWLDPAKLTSFNLTPSDVAAAIRSQNAQVAVGQLGGAPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +     +        +       
Sbjct: 229 VLNATVNAQSML-------------QTPEQFKNIFLKNAADGAQVRLSDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        + LR        + +          
Sbjct: 276 QFDSKFNGNPAGGVAIKLATGANALDTAAAVEKRLSELRVNYPSGLKDKLAYDTTPFIKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    ++       + +    +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEHLEPVPATEKSMGQISGALIGITSVLTAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           + FFGG      R F+IT+  ++++S+  A++   A+   +++      
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMILSLIVALTFTPALCATLLKQHDPNK 504



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 85/249 (34%), Gaps = 8/249 (3%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V LS V              +        +        +++     +E    ++    P
Sbjct: 259 QVRLSDVARVELGSDNYQFDSKFNGNPAGGVAIKLATGANALDTAAAVEKRLSELRVNYP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          +  I   +  +I + + + I +++  + W   +     + + +  
Sbjct: 319 SGLKDKLAYDTTPFIKLSIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T     +FG   N   + A++  IG  V+D +VV + +     +    +      +KS+ 
Sbjct: 379 TFAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEHLEPVPATEKSMG 436

Query: 767 ETLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +  G  +  TS+      +PMA +GG   VI   F+I +   ++++   ++     +   
Sbjct: 437 QISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMILSLIVALTFTPALCAT 495

Query: 823 IYDWRAKNA 831
           +      N 
Sbjct: 496 LLKQHDPNK 504



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
               GD++     +      +             +       + +   I+ ++I  + +  
Sbjct: 837  VSSGDAMLAMEEIIGKLPSMGLQGFDYEWTGLSLEERDSGNQTVPLLILSLLIVFLCLS- 895

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGI--------EFNLTAVAAVLTLIGYSV 734
               +   W   +  +  + L I          G+         FN+    A++ +IG S 
Sbjct: 896  --ALYESWAIPISVLLVVPLGIIGAF-TMTWLGMVIKGDPNLSFNIYFQVAIVAVIGLSA 952

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
             + +++ +  ++   L        +    +    L   + T++A    VLP+A+    G 
Sbjct: 953  KNAILIVEFAKE---LQEKGEELFEATLHAAKMRLRPIIMTTLAFGFGVLPLALASGAGA 1009

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                S    +  G++ +    IF      ++I        +
Sbjct: 1010 GSQHSVGYGVLGGVISSTLLGIFFIPVFFVWIRSIFKYKPK 1050


>gi|254713125|ref|ZP_05174936.1| Acriflavin resistance protein [Brucella ceti M644/93/1]
 gi|254716522|ref|ZP_05178333.1| Acriflavin resistance protein [Brucella ceti M13/05/1]
 gi|261218316|ref|ZP_05932597.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M13/05/1]
 gi|261320836|ref|ZP_05960033.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M644/93/1]
 gi|260923405|gb|EEX89973.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M13/05/1]
 gi|261293526|gb|EEX97022.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M644/93/1]
          Length = 1051

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/538 (11%), Positives = 139/538 (25%), Gaps = 57/538 (10%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114
             +     L   S+ +R          +    +    ++     + +   D + +      
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 115  VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR---- 170
                 + +   +N   K  +++      I  + +    +  +       +E + Q     
Sbjct: 641  ARNLPRTIMG-MNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLT 699

Query: 171  -IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
                    E    R      + Q   + D  + + +      +                 
Sbjct: 700  TEAAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG-------- 751

Query: 230  VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                         V D       +     +  + +     +   F    +     +    
Sbjct: 752  ----------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDALV 801

Query: 290  IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
              K +          A    +   +     +    I+    +AA +      I       
Sbjct: 802  TVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGSAY 861

Query: 350  RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSL 407
            + V           G+ A++ GL+++ L +   Y      L    ++   +   L    L
Sbjct: 862  QEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLATDL 915

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  ++
Sbjct: 916  RGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVMTS 975

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 976  LAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|17987912|ref|NP_540546.1| multidrug resistance protein MEXB [Brucella melitensis bv. 1 str.
           16M]
 gi|260563381|ref|ZP_05833867.1| acriflavin resistance protein [Brucella melitensis bv. 1 str. 16M]
 gi|17983648|gb|AAL52810.1| acriflavin resistance plasma membrane protein [Brucella melitensis
           bv. 1 str. 16M]
 gi|260153397|gb|EEW88489.1| acriflavin resistance protein [Brucella melitensis bv. 1 str. 16M]
          Length = 1051

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 71/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P RL Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDRLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVNSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +V + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAVKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+   + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLTFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/540 (11%), Positives = 141/540 (26%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPYVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLAV + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAVKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++T ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLTFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|330863125|emb|CBX73255.1| acriflavine resistance protein B [Yersinia enterocolitica W22703]
          Length = 682

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 74/684 (10%), Positives = 180/684 (26%), Gaps = 51/684 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGSLAIM-----KLPVAQYPTIAPPA-------------ISISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMKQEDIADYVGSNVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 AGVGDVQLFGSQ-YAMRIWMDPHKLNNYGLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQIMLKVNTDGSQVRLKDVAIVQLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARFNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGEHGPKTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + V    +     +  L         + +G     V
Sbjct: 516 NRMFEKSTHHYTDSVGNILRSTGRYLVIYLAIVIGMGVLFLRLPTSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +    +  +       F V      G           +K    
Sbjct: 576 QMPAGATQERTQKVLDQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIR 667
                +  Q    V   +SR+L  
Sbjct: 636 RPGEQTKFQRLLAVLLLLSRKLKT 659



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVQLGAENYNIIARFNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492


>gi|269963504|ref|ZP_06177829.1| protein export protein SecD [Vibrio harveyi 1DA3]
 gi|269831679|gb|EEZ85813.1| protein export protein SecD [Vibrio harveyi 1DA3]
          Length = 612

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 148/513 (28%), Positives = 270/513 (52%), Gaps = 27/513 (5%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            F   S+   + + M  + I LGLDLRGG   +L VD +           DE+++ L+++
Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALVDEIKASLRED 172

Query: 85  GIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
            +    +R    N I ++  +    +  +  +                    +T++++  
Sbjct: 173 RVRGVQVRAEAHNHIAVNSENEAGLKAASQFIRQNY------------PGWTMTSSDRGF 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  S+ NI +  +  ++Q+++I+R RI+++GI+E+ +QR G   I I+LPG QDP++ +
Sbjct: 221 ELQPSEQNIQEFQTTTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++V    + +        L+D+DG   ++  +  ++G H+  A A  D 
Sbjct: 281 NVIGATASLAFYEVKD--AGQARSSQDLVLKDNDGRTVILTKRPVLTGEHIVNARAGVDK 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+       +      + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTDERGMTERSERVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +++ ERI+++ R+ +S   ++D+GF  A++TI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL ++ SMFT +   RAM+  I      + + 
Sbjct: 579 LGLGLMTSMFTGVFASRAMINLIWGRDGRRDVR 611



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    TI     +G  +  E I+ G   + +     L ++ + +
Sbjct: 410 SMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L  ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SF   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 MRE---GRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGFALTLGLGLMT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+    + 
Sbjct: 586 SMFTGVFASRAMINLIWGRDGRR 608


>gi|90021055|ref|YP_526882.1| protein translocase subunit secF [Saccharophagus degradans 2-40]
 gi|89950655|gb|ABD80670.1| protein translocase subunit secF [Saccharophagus degradans 2-40]
          Length = 317

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 165/296 (55%), Gaps = 8/296 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           + FM  R      SIL  + SI  L   GLN+G+DF GG QL        DL+ +R+ LE
Sbjct: 7   LNFMGQRKLAAVFSILLLVGSIVSLTVQGLNFGLDFTGGTQLEYKYETAADLNAIRATLE 66

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM-------VKKKITEIVPLSTIQ 652
                     N+  + N L+ LQ     S   ++  E+       ++   ++      + 
Sbjct: 67  EAGYTGAVVVNYGSDTNVLMSLQQSVPPSADPSKPQEIVSIGEVVLELLESKSSEEIELL 126

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            T++VG ++  EL   G +G++++   ++ Y+ +RF++ F++GA+  LI D+   LG F+
Sbjct: 127 RTDVVGAQVGEELANSGGMGMLLALAVVMAYVAVRFQFKFSVGAVAALIHDVIIVLGVFS 186

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F + F+LT +AAVL +IGYS+ND +VV DR+R+N +L     S  ++I+ S+ +TLGR+
Sbjct: 187 FFQLTFDLTVLAAVLAVIGYSLNDTIVVADRIRENFRLIRKGDS-EEVINISLTQTLGRT 245

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + TS+   + +L +   GG +I +FA+ +  G+V+   SSI+++A IL+ ++  R 
Sbjct: 246 MITSLTTLLVLLALFFVGGEMIHNFALALIVGVVIGTYSSIYVSANILMAMHIDRE 301


>gi|256044021|ref|ZP_05446932.1| multidrug resistance protein MEXB [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265990431|ref|ZP_06102988.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263001215|gb|EEZ13790.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 1051

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 71/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P RL Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDRLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +V + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAVKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+   + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLTFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/540 (11%), Positives = 141/540 (26%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPYVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLAV + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAVKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++T ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLTFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|91778868|ref|YP_554076.1| RND family hydrophobe/amphiphile efflux pump [Burkholderia
           xenovorans LB400]
 gi|91691528|gb|ABE34726.1| hydrophobe/amphiphile efflux pump, RND family [Burkholderia
           xenovorans LB400]
          Length = 1076

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 69/680 (10%), Positives = 172/680 (25%), Gaps = 40/680 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P               + +    
Sbjct: 10  RPIFASVISIVIALGGVLAMF-----ALPVAQYPDITPP-------------QITITASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   +        +   S       I + F +    +     V  
Sbjct: 52  PGASADVVANNVAAPIEQQVNGADNMIYMTSSSSSTGSLTINVFFRNGTNPDLAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    +   +    +    +++           +   +       +D +   
Sbjct: 112 RVNLALPQLPQSVQSQGVQVQKKSSAFMMVVAVYSPDNRFDSTYVANYANVYVLDALKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ QL  T   +       N        G        
Sbjct: 172 PGANQASIFGTPDYAMRIWLRPDRMAQLGITATDVQNAVANQNQQFAVGRLGQAPTGSPV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V     +S                   + I     GA                  
Sbjct: 232 EQSFAVTTSGRLSNPAEFDN------------IIIRAAGNGAAIVRLKDIGRAELGQKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +      A ++          +          
Sbjct: 280 SIRSRFQGKPATVIAIYQQPGANALDVSKQVRATLADMKRSFPEGIDYNIAMDTTDFTRA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV+IV+FM +   +  L+   ++ ++++ T   ++ LG ++ + ++
Sbjct: 340 SIADVVKTFFEAVLLVVIVVFMFLQSLRATLIPVLAVPVSILGTFMGMAALGFSINMLTM 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473
            G+VL IG+ VD  I+V E +    R    S   +             TI        + 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMREFGLSPNAAAKRAMDEVSGPVVTIVLVMCAVFVP 459

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   + FAIT+ +S+++S   A+++  A+   +++ +               
Sbjct: 460 VAFLGGITGQMYKQFAITIAISVVLSGIVALTLSPALAAVLLKPQAHAKHRFFQWFDNAF 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                                L     + LL    +          +          +  
Sbjct: 520 ARVTAGYGRAVTLTIRRFGIALLLFAGMVLLAVTMMRSIPHAFLPPEDQ-GYLLGAIIMP 578

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
             ++L+           + G++  +  +    G S+   + +         +       +
Sbjct: 579 DSASLDRTGRVSSRVTEYFGKQAGVGSITVVDGYSLLDNQTMNNAATFFVGLKGFDERYS 638

Query: 654 TEIVGPKISRELIRKGIVGV 673
              +  + +  L+      +
Sbjct: 639 WANIRTQNAHALLLGAYRAL 658



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 82/201 (40%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      L  +K+   E +  +   +T         ++++     V++  I + +++   
Sbjct: 307 SKQVRATLADMKRSFPEGIDYNIAMDTTDFTRASIADVVKTFFEAVLLVVIVVFMFLQ-- 364

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  + + I  T    A  G   N+  +  ++  IG  V+D +VV + + +N
Sbjct: 365 -SLRATLIPVLAVPVSILGTFMGMAALGFSINMLTMFGMVLAIGIVVDDAIVVIENVERN 423

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
           M+ +   +S      ++++E  G  V   +      +P+A  G   G +   FAI +A  
Sbjct: 424 MREF--GLSPNAAAKRAMDEVSGPVVTIVLVMCAVFVPVAFLGGITGQMYKQFAITIAIS 481

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           +V++   ++ ++  +   +  
Sbjct: 482 VVLSGIVALTLSPALAAVLLK 502



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 61/165 (36%), Gaps = 7/165 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +  +   + + + +  ++ +W   +G +  +   +   L    L G+  ++     +  L
Sbjct: 877  LVFVFGLVMVFLILAAQYERWSLPVGVLMAVPFALFGALLAILLRGLNNDVYFQIGLTML 936

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +  +  + +++++     +       S  D    +  + L   V TS A  +  +P+A+ 
Sbjct: 937  VALAAKNAILIFEFA---VLNRAQGASPFDAALTAARDRLRPIVMTSFAFILGCVPLAIA 993

Query: 790  GGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G+      S    +  G++ A   ++F        +     + A
Sbjct: 994  TGASQNSRHSIGTGVIGGMLGATGVAVFFIPMFFFLLESANERRA 1038


>gi|300693757|ref|YP_003749730.1| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum PSI07]
 gi|299075794|emb|CBJ35100.2| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum PSI07]
          Length = 1050

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 84/684 (12%), Positives = 178/684 (26%), Gaps = 39/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L           + ++PS  P                      
Sbjct: 8   RPIFAWVLAIIVMLAGALSIA-----TLPIAQYPSIAPPAI---------AITATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    L        +        ITL+F +    +    +V   L  
Sbjct: 54  AKTLEDTVTQIIEQKMKGLDHLSYMASTSESSGTVTITLTFENGTDPDTAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      + +     +       + S  +     D I   E   
Sbjct: 114 ATPLLPQEVQQQGVQVTKSATNFLNVLAFTSEDGSMTGSDLSDYVAANVQDAISRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G     D+     
Sbjct: 174 DTTLFGSQ-YAMRIWLDPNKLSNFSLTPLDVKTAIQAQNAQVSAGQLGGMPAVDNQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      +   +    R        I           
Sbjct: 233 TITSQTRL-------------KTAEAFGNILLRTQTDGSRVRLRDVARIELGSESYSTVG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T++      A L     P                S   
Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFLPPGMKVQKPYDTTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++  +V
Sbjct: 340 VVRTLAEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEGLPPREATRKSMGQITGALVGVALVLAAVFVPMAFF 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F+IT+  ++ +S+  A+ +  A+   +     +K +              
Sbjct: 460 KGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCATL-----LKPVKKGHAQATTGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R      GI           +  +G+   +   G ++L V      D   +   
Sbjct: 515 FNRTFDRGNHRYQGIVRHMLNKGRRYMIVYGVLLALVVAGFMKLPVGFLPDEDQGTLF-V 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L  L  G  + +  D  +           D+V+    +       +              
Sbjct: 574 LAQLPPGATNARTEDVIRQVEHHFLVDQKDAVSGVFSVAGFSFAGSGQNMGFAFVKLRPW 633

Query: 658 GPKISRELIRKGIVGVIISAIAML 681
             +    L   G+V    +  A +
Sbjct: 634 NERKGEALSVNGVVAKAFAFFATI 657



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 86/247 (34%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        L        +++   + ++    ++   +
Sbjct: 258 SRVRLRDVARIELGSESYSTVGRYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PPGMKVQKPYDTTPFVRISIEEVVRTLAEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+
Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPREATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA + GS       F+I +   + ++   ++ +   +   
Sbjct: 436 GQITGALVGVALVLAAVFVPMAFFKGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 LLKPVKK 502



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 69/233 (29%), Gaps = 6/233 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +    +     S +         V +        A +     + +     +P     +  
Sbjct: 800  TAFAKVDWASGSPRLERYNGVPSVEILGMAKPGSASSGEALAIVEDAVAKLPPGIGYSWT 859

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
             +  +      +  ++  +   I  L    +   W      I  + L +   L    L  
Sbjct: 860  GLSLQEKASSGQTTLLYTLSILIVFLCLAALYESWAIPFSVIMVVPLGVLGALVGAILTW 919

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               ++     +LT IG +  + +++ +  +    L+       +    +    L   + T
Sbjct: 920  KMNDVYFQVGLLTTIGLASKNAILIVEFAKD---LHAQGKRLAEAAMTAARMRLRPILMT 976

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            S+A  + VLPM      G     +    +  G++     +IF      + +  
Sbjct: 977  SLAFILGVLPMVTGSGAGAGAQHALGTAVIGGMLSGTLLAIFFVPLFFVLVRG 1029


>gi|91790473|ref|YP_551425.1| preprotein translocase subunit SecF [Polaromonas sp. JS666]
 gi|91699698|gb|ABE46527.1| protein translocase subunit secF [Polaromonas sp. JS666]
          Length = 317

 Score =  194 bits (493), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 3/302 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS      ++  LF+ GL+  ++F GG  + V   +  D
Sbjct: 1   MEFFKIRRDIPFMRHALIFNVISFATFALAVFFLFSRGLHLSVEFTGGTLMEVNYAQAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R+ +  L + D+  QNF   ++ ++RL  Q G S AQ    E V   +       T
Sbjct: 61  VGKIRATVAGLGLTDVQVQNFGTSRDVMIRLPAQKGVSTAQQS--EKVLVALKAASSDVT 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++ TE VGP++  EL   G+  + +    +++Y+  RF+W +A+ AI   + D+   LGF
Sbjct: 119 LRRTEFVGPQVGEELAHDGLKALAMVVFGIMVYLAFRFEWKYAVAAIIANLHDVVIILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           FA F  EF+L  +AAVL ++GYSVN+ VV++DR+R+N + Y   ++   +ID +I  T+ 
Sbjct: 179 FAFFQWEFSLAVLAAVLAVLGYSVNESVVIFDRIRENFRRYRK-MNTVQIIDNAITSTIS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           R++ T  +  I VL M ++GG  +  FA+ +  GI+    SS+F+AA I +++   R   
Sbjct: 238 RTIITHGSTQIMVLSMLLFGGPTLFYFALALTIGILFGIYSSVFVAAAIAMWLGIRREDL 297

Query: 831 AR 832
            +
Sbjct: 298 VK 299


>gi|315636238|ref|ZP_07891490.1| RND efflux system, inner membrane protein CmeB [Arcobacter butzleri
           JV22]
 gi|315479447|gb|EFU70128.1| RND efflux system, inner membrane protein CmeB [Arcobacter butzleri
           JV22]
          Length = 1042

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 75/675 (11%), Positives = 191/675 (28%), Gaps = 42/675 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  +  +L  +I   G +           ++++P  +P               +++   
Sbjct: 8   KNPVFAGVLSIIIFLTGTIAMF-----NLPIEQYPRVLPP-------------QIIVSTS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L   +     +   +     +    I + F      ++    V 
Sbjct: 50  YPGASADTIAKTVAAPLEEQINGAKNMLYMNSLAEDSGRLSINVFFEVGTNPDDAKIDVN 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   +K+    ++  +V        ++ +          +I  S   +   ++ +  
Sbjct: 110 NRVQAALAKMPEQVQRQGVVVGERSPSILMFAMLQSPNKTFDSIYLSNYALLNLVESLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +     +        +    DP +L +    T  +       NN           +   
Sbjct: 170 VKGVGDAMIFGAKDYSIRIWMDPLKLSKYSLATTDVITAIKEQNNQYAAGKIASEPIAQK 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y +                       +    +                 +    + 
Sbjct: 230 QMYTYTIRTPQR-------------FENPEQFGNIVIRSNEDGSSLRLKDIATVELGASD 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            ++  +   T +                    +   +     
Sbjct: 277 YSVTTRLNNAPSIPIGVFLQSGANSLETADAIKKALEDASKSFPEDMTYSIPYDSTDFIT 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++++F+ +   +  ++   ++ ++++   A +  LG ++ L +
Sbjct: 337 ASIHEVVKTFVEALALVILIIFLFLQSWRATIIPFIAVPVSIVGAFAGMYALGFSINLLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E I     + ++   +  +        +    +      + 
Sbjct: 397 LFGLVLAIGIVVDDAIIVIENIERHMEEGKTPKEAAFIAMKEVTGALIAIILVLGAVFIP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFF 532
           + F G   G   R FAIT+ +S++IS F A+++  A+ +  +   K          +  F
Sbjct: 457 VAFMGGLSGEMYRQFAITIVISVVISGFVALTLTPALCVKVLKNKKHEPKGFFKWFNDSF 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSIC--SICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                     ++       IS+L       I       +  G+          +      
Sbjct: 517 AKATQGYSIIVKKSIRFSLISVLLYAGLLFISWDMFKSMKTGLLPDEDQGTIFVFGFNPP 576

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              +  +LE  +  +          N +    Y    S  ++  +  + K        + 
Sbjct: 577 GYSMSKSLELSEEINKIIAEDPSVNNIITLAGYDFTTSAQRSHTVATIIKLKDWSKRPNP 636

Query: 651 IQNTEIVGPKISREL 665
            Q  + +  K S++L
Sbjct: 637 EQEAQALLAKFSKQL 651



 Score = 85.9 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/289 (9%), Positives = 85/289 (29%), Gaps = 10/289 (3%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S   +   +            + +    + + +N       ++               
Sbjct: 221 IASEPIAQKQMYTYTIRTPQRFENPEQFGNIVIRSNEDGSSLRLKDIATVELGASDYSVT 280

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG- 669
                   + +              + +KK + +         T  +    +  +     
Sbjct: 281 TRLNNAPSIPIGVFLQSGANSLETADAIKKALEDASKSFPEDMTYSIPYDSTDFITASIH 340

Query: 670 --IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             +   + +   +++ I++    W   +     + + I          G   NL  +  +
Sbjct: 341 EVVKTFVEALALVILIIFLFLQSWRATIIPFIAVPVSIVGAFAGMYALGFSINLLTLFGL 400

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISV 783
           +  IG  V+D ++V + +    +      + ++    ++ E    L   +    A FI V
Sbjct: 401 VLAIGIVVDDAIIVIENI---ERHMEEGKTPKEAAFIAMKEVTGALIAIILVLGAVFIPV 457

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             M    G +   FAI +   +V++   ++ +   + + +   +    +
Sbjct: 458 AFMGGLSGEMYRQFAITIVISVVISGFVALTLTPALCVKVLKNKKHEPK 506



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFAL 713
                    +++        I   + + + +  +  +W   L  +  +   I   +    +
Sbjct: 855  WTGTAYQEKQIGGSSAQAFIFGIVFLFLILCALYERWLLPLSVVLAVPFAIFGAILATNI 914

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
              ++ N+     +L L G +  + +++ +     ++     I   D   ++    L   +
Sbjct: 915  RSLDNNIYFQIGLLVLAGLAAKNAILIVEFA---IQKQKEGIKLVDAALEAAKVRLRPII 971

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             TS+A  + V+P+A+    G +   S    +  G++ A   +I       + I  
Sbjct: 972  MTSLAFTVGVMPLAISSGAGAASKHSIGTGVVGGMLTATFIAILFIPLFFVLISR 1026


>gi|215427987|ref|ZP_03425906.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           T92]
          Length = 529

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 133/296 (44%), Gaps = 11/296 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    G+S      +I  +   G  +GIDFKGG  +           V      +L  
Sbjct: 62  GRRRLWFGVSGAIVAVAIASIVFRGFTFGIDFKGGTTVSFPRGSTQVAQVEDVYYRALGS 121

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659
              S        +  V+++ +   S    ++ + + +          P     +   V  
Sbjct: 122 EPQSVVIVGAGASATVQIRSETLTSDQTAKLRDALFEAFGPKGTDGQPSKQAISDSAVSE 181

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++ +K ++ +++  + + +YI +R++ Y  + AIT ++ D+T T G ++L G E  
Sbjct: 182 TWGGQITKKAVIALVVFLVLVALYITVRYERYMTISAITAMLFDLTVTAGVYSLVGFEVT 241

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D V+V+D++ +N     +TT  +F +  + +IN+T  RS+ TS+
Sbjct: 242 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTFMRSINTSL 301

Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + VL +      + G   +   A+    GI++   SSIF A P+L+ + +   
Sbjct: 302 IGVLPVLALMVVAVWLLGVGTLKDLALVQLIGIIIGTYSSIFFATPLLVTLRERTE 357


>gi|288800552|ref|ZP_06406010.1| multidrug efflux RND transporter MexF [Prevotella sp. oral taxon
           299 str. F0039]
 gi|288332765|gb|EFC71245.1| multidrug efflux RND transporter MexF [Prevotella sp. oral taxon
           299 str. F0039]
          Length = 1062

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 68/535 (12%), Positives = 156/535 (29%), Gaps = 40/535 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  IG+L           + +FPS  P              ++V   D
Sbjct: 7   RRPVLAIVVSLVIVFIGILSLF-----NLPITQFPSISPPK-----------VNVV--AD 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N  + +     L   L    G+         +   +I + F         A  V 
Sbjct: 49  YPGANNELMIKSVLIPLEQALNGVPGMKYIESDAGNDGEGEINIVFKLGTDPNVDAINVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL     +  +  + E+   ++      D                   ++  
Sbjct: 109 NRVSAATNKLPPAVVREGVKISREEPNILMYINLYSDDPKVDQNFLFNYADINISPELAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P +L     +   ++      +        G    + +
Sbjct: 169 VDGVGDLDILGTRSFAMRVWLKPDKLTAYGLSATDITDALQQQSIEASPGKLGESSGKHA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++     +                +    +       +        ++     V
Sbjct: 229 QSFEYVLKYPGRYT-------------TPEEYSNIVVKSTPDGQFIRLKDVADVSLGSEV 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +    I+      A L+          +         
Sbjct: 276 YDIYSTLNNHPSAAITLKQAYGSNARQVIQNVKKTMAHLQKDMPKGMHYELSYDISRFLD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV  V+F+ +   +  L+   ++ +++I + A+++  G TL + S
Sbjct: 336 ASIEKVIHTLFEAFILVGFVVFLFLGDWRSALIPCLAVPVSLIGSFAVMNAFGITLNMIS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +V+ IG+ VD  I+V E +  +  ++      +           I    +      +
Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVKIAKEGLEPLEATQKAMKEISGAIVAVTLVMASVFI 455

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            + F G   G   R F+IT+   I++S FTA+++  ++   I+  ++   I    
Sbjct: 456 PVAFMGGPEGMFYRQFSITIASGIVLSGFTALTLTPSLCALILTRERDNHIKKTW 510



 Score = 95.5 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 98/278 (35%), Gaps = 9/278 (3%)

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
                           +    + V +        ++   +     ++         +   
Sbjct: 229 QSFEYVLKYPGRYTTPEEYSNIVVKSTPDGQFIRLKDVADVSLGSEVYDIYSTLNNHPSA 288

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIIS 676
            +  +        +V++ VKK +  +           +   ISR L   I K I  +  +
Sbjct: 289 AITLKQAYGSNARQVIQNVKKTMAHLQKDMPKGMHYELSYDISRFLDASIEKVIHTLFEA 348

Query: 677 AIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I +  +       W  AL     + + +  +      FGI  N+ ++ A++  IG  V+
Sbjct: 349 FILVGFVVFLFLGDWRSALIPCLAVPVSLIGSFAVMNAFGITLNMISLFALVMAIGIVVD 408

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
           D +VV + +  N+K+    +   +   K++ E  G  V  ++      +P+A  GG    
Sbjct: 409 DAIVVIEAV--NVKIAKEGLEPLEATQKAMKEISGAIVAVTLVMASVFIPVAFMGGPEGM 466

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F+I +A GIV++  +++ +   +   I      N
Sbjct: 467 FYRQFSITIASGIVLSGFTALTLTPSLCALILTRERDN 504



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 80/245 (32%), Gaps = 10/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V  +       +  +               +    +   S A         K I E+  
Sbjct: 789  NVKNNQGEMVPYADFLHMEKVYGMSEMTRHNLYNSAEVTGSAAAGYSSGQAIKAIEEVAT 848

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRFK---WYFALGAITTLILD 703
             +     +     I+++ + +G   +II  +    IY+ +  +   +   L  IT L   
Sbjct: 849  STLPHGYDYDFAGITKDEVDQGNQALIIFIVCLTFIYLILSAQYENFLLPLPIITCLPAG 908

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I  T  F  L G+E N+ A  A++ LIG    + V++ +     ++ +    S R    +
Sbjct: 909  ICGTFIFLKLTGLENNIYAQVAMVMLIGLLGKNAVLMVE---YAVQRHNLGRSIRAAAIE 965

Query: 764  SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    +LP+    G   I   +     A G++      + +   + 
Sbjct: 966  GAAARFRPILMTSFAFIAGLLPLVFAHGAGAIGNRTIGTAAAGGMLFGTCFGLILVPGLY 1025

Query: 821  LFIYD 825
                 
Sbjct: 1026 YIFGR 1030


>gi|167622139|ref|YP_001672433.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167352161|gb|ABZ74774.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella halifaxensis HAW-EB4]
          Length = 1052

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 74/687 (10%), Positives = 186/687 (27%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +        + ++PS  P + +            V     
Sbjct: 8   RPIFAWVIAIIVMLAGVLSIV-----GLPVSQYPSIAPPSVV---------ISAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + L        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTMEDSVTQVIEQRMTGLDNLRYISSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + +   +  T      ++++    +       + +  +     D +       
Sbjct: 114 AMPLLPQEVQAQGVNVTKSSAGFLMVAAFVSEDGSLDKNDIADYVGSNIQDPLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L Q   T+  +       N        G            
Sbjct: 174 TIELFGAQ-YAMRIWLDPLKLTQFNLTSQDVISSIREQNAQVSAGQLGGAPSLPGQELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +    + F      +           
Sbjct: 233 TVSAQSRL-------------QTAEQFQKIIIKADTSGAKVFLEDVARVELGAESYAVES 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T E      A L+         +           S   
Sbjct: 280 FYNGKPAAGIGIQLATGANALATAEGVRAKIAELKPFFPEGMEVVYPYDTTPFVEKSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T A+L++ G ++   ++  +V
Sbjct: 340 VVYTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILAVAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPIEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSIDINP 527
            G      R F+IT+  ++ +S+  AI +  A+   +++                 +   
Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVMVAIILTPALCATMLKPIAKGESHAKTGFFGWFNRKF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +A    R     +    +        +         + +G +    +   
Sbjct: 520 DALTSRYEANVAAMIKRTGRTMMVYLAITVAVGWIFMRMPTAFLPDEDQGILFTQAILPV 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  LE +    ++ ++ + +  F V      G           +K       P
Sbjct: 580 NSTQQETKQVLEQVSDYFLNDESANVKSVFSVSGYSFAGMGQNMGLAFVGLKDWSERSNP 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
              +Q+          ++    +   +
Sbjct: 640 GQDVQSVANRAMAKFSQMKEAFVFAFV 666



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 81/240 (33%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       +   +           +        +++A    +     ++ 
Sbjct: 255 TSGAKVFLEDVARVELGAESYAVESFYNGKPAAGIGIQLATGANALATAEGVRAKIAELK 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  ++ + + + + +++  + +   L     + +
Sbjct: 315 PFFPEGMEVVYPYDTTPFVEKSIEGVVYTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    A+ G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAILAVAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPIEATK 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F+I +   + ++   +I +   +
Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVMVAIILTPAL 492



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 73/246 (29%), Gaps = 13/246 (5%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 +      +       V  S   S         +   N     N            
Sbjct: 777  YRMQPEDLDSWYVRNSKGEMVPFSAFASGTWGYGSPRLERFNGLPAMNIQGGTAPGYSTG 836

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   +  MVKK            + E         ++        +S + + + +   +
Sbjct: 837  AAMDDIEAMVKKLPPGFGIEWNGLSYEERLSGNQAPMLY------ALSIVVVFLVLAALY 890

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 891  ESWSVPFAVVLVVPLGIIGALIAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEY 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 951  ---YEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGG 1007

Query: 805  IVVAAS 810
            ++ +  
Sbjct: 1008 MMSSTF 1013


>gi|71066131|ref|YP_264858.1| RND superfmily multidrug/dye/detergent efflux pump AcrB
           [Psychrobacter arcticus 273-4]
 gi|71039116|gb|AAZ19424.1| RND Superfmily multidrug/dye/detergent efflux pump AcrB
           [Psychrobacter arcticus 273-4]
          Length = 1075

 Score =  194 bits (493), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 80/696 (11%), Positives = 192/696 (27%), Gaps = 51/696 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  IG++  L        ++++P   P               + +    
Sbjct: 8   RPIFAWVLAVLVMLIGVISVL-----NLPIEQYPRIAPPT-------------ISVSASY 49

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S       +TL+F +    +    +V  
Sbjct: 50  PGANAQTVENSVIQIIEQRMKGLDGLMYMSSSSSSNGSASVTLTFENGTDSDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  +         +++     +       +    I    +D I   
Sbjct: 110 KLQAAMSSLPESVQRQGVNVNKSSSSFMMVQAFISEDGNMDRSDIGDYINSNVLDAISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DPSRLR      + +       N        G        
Sbjct: 170 EGVGEVQVFGS-TYAMRVWLDPSRLRSYNMVPSDVVNAIRAQNTQVSAGQLGQAPADTDQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                         I+      ++     +    +   +    +       ++       
Sbjct: 229 QV------------INATVTVQSYLQTPEEFQNILLKTDTAGAQVRLGDVADVEIGSENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +           S  A  +   T E  G+  A L         ++V          
Sbjct: 277 SVVSLYNGQEAAGLGISLAAGANALETREAVGVRMAELEKNFPAGLTSVVPYDTTPFVRL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + ++ T  +L + G ++ + ++
Sbjct: 337 SIEQVVMTLIEAIVLVFIVMFLFLQNWRATIIPTLAVPVVLLGTFGVLYIAGFSINVLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IGL VD  I+V E +    E   + S+  +           +    +      +
Sbjct: 397 FAMVLSIGLLVDDAIVVVENVERILEEDPHISIKDATVQSMGEISKIVIGIALILSAVFI 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKS 522
            + FFGG      R F+IT+  S+++S   A+    A+ + +++            +   
Sbjct: 457 PMAFFGGSTGVIYRQFSITLITSMVLSAMVALVFTPALCVTLLKRGKSHEKGNSENQKGF 516

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 S                RF  + + +  +I  I  +    +      +    + 
Sbjct: 517 FGWFNRSFTKTSQSYEKFIGKSFRFKWLYLIVYAAIIGIMAVVFLRIPGSFLPEEDQGIM 576

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
               +    S +    + L      +   + +    V        +     +     +  
Sbjct: 577 FTLVQLPAGSTLDETQDVLDKIRNYYDTQESDNIASVFTIAGFSFAGQGQNMGLAFVRLS 636

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                       + V  +       +     + + +
Sbjct: 637 DWEERSGDENTAQAVAGRAMGYFFTQLNEAQVFAIV 672



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 94/253 (37%), Gaps = 5/253 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V L  V       +   +       E   L        +++     + +   ++ 
Sbjct: 256 TAGAQVRLGDVADVEIGSENYSVVSLYNGQEAAGLGISLAAGANALETREAVGVRMAELE 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               R  I + ++ +I + + + I +++  + W   +     + +
Sbjct: 316 KNFPAGLTSVVPYDTTPFVRLSIEQVVMTLIEAIVLVFIVMFLFLQNWRATIIPTLAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T G   + G   N+  + A++  IG  V+D +VV + + + +      IS +D   
Sbjct: 376 VLLGTFGVLYIAGFSINVLTMFAMVLSIGLLVDDAIVVVENV-ERILEEDPHISIKDATV 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     +  ++      +PMA +GGS       F+I +   +V++A  ++     +
Sbjct: 435 QSMGEISKIVIGIALILSAVFIPMAFFGGSTGVIYRQFSITLITSMVLSAMVALVFTPAL 494

Query: 820 LLFIYDWRAKNAR 832
            + +      + +
Sbjct: 495 CVTLLKRGKSHEK 507



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 84/255 (32%), Gaps = 11/255 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
             D  G   +    N  +      S+        ++  N     N             A +
Sbjct: 787  PDDIGKWYVRNDMNDMISFDAFSSSEWQSGSPRLTRYNSLPSMNIQGSAAPGLSTGEAMS 846

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             +  M+ K    I    T  + E         ++    + +++  + +     +   W  
Sbjct: 847  SMEAMIDKLPEGISYEWTGMSLEEQKSGAQAPILYA--LSILVVFLCLA---ALYESWSI 901

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                +  + L +   + F  L G   ++     +LT++G S  + +++ +  ++      
Sbjct: 902  PFSVLLVIPLGVLGAVIFTWLRGFANDIYLQVGLLTVVGLSAKNAILIIEFAKE---RQE 958

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
               S  + +  +  + L   + TS+A  + V+P+ +    G     +    +  G++ A 
Sbjct: 959  AGYSLTEAVMTAARQRLRPIIMTSLAFGLGVVPLFLANGPGSGSQNAIGTSVIGGVITAT 1018

Query: 810  SSSIFIAAPILLFIY 824
               IF      +++ 
Sbjct: 1019 LLGIFFIPMFYIWVR 1033



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 52/529 (9%), Positives = 142/529 (26%), Gaps = 35/529 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            ++  +  +   +I    ++  +     +      P        +L + L  GS L    D
Sbjct: 537  KSFRFKWL--YLIVYAAIIGIMAVVFLRIPGSFLPEEDQGIMFTL-VQLPAGSTLDETQD 593

Query: 62   EDDFVNGFLQ-MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D +  +     SD + S     G       Q      +  +D   +    +       
Sbjct: 594  VLDKIRNYYDTQESDNIASVFTIAGFSFAGQGQNMGLAFVRLSDWEERSGDENTAQAVAG 653

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI----GI 176
                       +  +       I+ + + +  + ++  +     + + +  + +      
Sbjct: 654  RAMGYFFTQLNEAQVFAIVPPAITELGNASGFNLMLQDSGNLGHDGLLEARNMLLGMAAQ 713

Query: 177  SESTIQRLGSHRILIQLPGEQ-DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            +E       + +          +  +      + + ++                      
Sbjct: 714  NEQVAGVRPNGQEDSPQLKIDINQEQAAAYGLSLSNINSVISTAW--------------- 758

Query: 236  SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                     D+  I  +++ G  ++           +  D      F   +         
Sbjct: 759  GSSYVNDFVDRGRIKRVYVQGEASSRTNPDDIGKWYVRNDMNDMISFDAFSSSEWQSGSP 818

Query: 296  VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
             +     L +  I  +   G +      ++E          +                 +
Sbjct: 819  RLTRYNSLPSMNIQGSAAPGLSTGEAMSSMEAMIDKLPEGISYEWTGM--------SLEE 870

Query: 356  LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
              S +      A+   +V + L  +             I L V+  +    L G    + 
Sbjct: 871  QKSGAQAPILYALSILVVFLCLAALYESWSIPFSVLLVIPLGVLGAVIFTWLRGFANDIY 930

Query: 416  SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
               G++  +GL+  + IL+ E  +E      S+  ++     +    I  +++   +  V
Sbjct: 931  LQVGLLTVVGLSAKNAILIIEFAKERQEAGYSLTEAVMTAARQRLRPIIMTSLAFGLGVV 990

Query: 476  VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             LF     G G+      ++   ++ +    I  +    I++      K
Sbjct: 991  PLFLANGPGSGSQNAIGTSVIGGVITATLLGIFFIPMFYIWVRSAFPHK 1039


>gi|307297096|ref|ZP_07576911.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobium chlorophenolicum L-1]
 gi|306877484|gb|EFN08713.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobium chlorophenolicum L-1]
          Length = 1045

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 83/688 (12%), Positives = 191/688 (27%), Gaps = 49/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GL   L        + ++P   P               + +  + 
Sbjct: 9   RPIFAWVIAIGIMMAGLGAML-----SLPIAQYPDIAPP-------------SVNVSANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   L            S    Q +IT++F      +    +V  
Sbjct: 51  PGASAETVETSVTQVIEQQLTGIDGLMYFSSSSTANGQARITVTFKKGTDPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S+L    ++  L  T  +   ++L         +   + +  ++    D I   
Sbjct: 111 KVQQALSRLPNAVQQQGLTVTKSQTDFLMLVGLYDRTDTASQADIADYLVNNFQDSIARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L  +    + +       N        G     +  
Sbjct: 171 DGVGSSQIFGSQ-YAMRVWLDPYKLATVKLMPSDVQSAIAAQNIEVSAGQIGADPAPEGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    +   +             +       
Sbjct: 230 QINATVTAQARL-------------QTPEQFRNIVVKTQSDGSVVHLSDVARVELGNESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +              T E        L          +           
Sbjct: 277 TSSAHLNRHPASGMAIQLAPGADALKTAELVKARVEALSTDLPHGYTVVYPRDTTPFIKL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV++V+F+ +   +  LV   ++ + ++ T  +L+L G ++   ++
Sbjct: 337 SVDEVVQTLIEAVGLVVVVMFLFLQSWRATLVPAIAVPVVLLGTFGVLALFGYSINTMTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +         + +    +      + 
Sbjct: 397 FGMVLSIGLLVDDAIVVVENVERLMEEEGLSPRDATIKSMEEIGNALIGIALVLSAVLLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDI 525
           + FFGG      R F+IT+  S+L+S+  A+ +  A+   I                 + 
Sbjct: 457 MAFFGGSTGVIYRQFSITIVSSMLLSVLVALILSPALCATILKPVTREHRESGWHGKFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +     R  F+ VG +++  +  +  +        ++ +G + + V  
Sbjct: 517 WFERVTRGYMTRLNGFIGRRTFFWVGYAVILVLLWLLFVRLPTSFLPVEDQGQVMVQVTL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                 S   + +ES+Q   ++ +  +    F+ +     G      +    +       
Sbjct: 577 PAGAKSSRTSAAVESIQNYFLNDEKDNVSFIFMAQGFSFAGQGENTAQGFISLSPWDERK 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673
              ++         K    +       +
Sbjct: 637 GMANSATMIANRATKQLAAIRDAKAQAL 664



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 80/196 (40%), Gaps = 8/196 (4%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            +      +E +   +     +   ++T         E+++  I  V +  + M +++  
Sbjct: 303 TAELVKARVEALSTDLPHGYTVVYPRDTTPFIKLSVDEVVQTLIEAVGLVVVVMFLFLQ- 361

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              W   L     + + +  T G  ALFG   N   +  ++  IG  V+D +VV + +  
Sbjct: 362 --SWRATLVPAIAVPVVLLGTFGVLALFGYSINTMTLFGMVLSIGLLVDDAIVVVENV-- 417

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    +S RD   KS+ E     +  ++     +LPMA +GGS       F+I +  
Sbjct: 418 ERLMEEEGLSPRDATIKSMEEIGNALIGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVS 477

Query: 804 GIVVAASSSIFIAAPI 819
            ++++   ++ ++  +
Sbjct: 478 SMLLSVLVALILSPAL 493



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 72/216 (33%), Gaps = 9/216 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             Y+     A          ++ ++        +        +E +  G   ++     ++
Sbjct: 822  SYEIQGQAAPGASSGEAMDEMVKLQRQLPSGTSFAWSGLSYQEQLSGGQAPLLYGLSVLV 881

Query: 682  IYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++    +   W   L  +  + L +   +    L G+E N+     +LT +G +  + +
Sbjct: 882  VFLCLAALYESWSIPLAVLLVIPLGLIGAVLAVTLRGLENNIYFQVGLLTTMGLAAKNAI 941

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ +     +  +           ++        + TS+A    V+P+A+    G     
Sbjct: 942  LIVE--FAELA-HLEGKDAMSAALEAARLRFRPILMTSLAFIAGVIPLAIATGAGAQSRV 998

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    +  G++ A   +IF      L I     +  
Sbjct: 999  AIGTAVVGGMLTATVLAIFYVPLFFLTIMRIFNRKG 1034


>gi|145298425|ref|YP_001141266.1| AcrB protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142851197|gb|ABO89518.1| AcrB protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 1047

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 71/685 (10%), Positives = 185/685 (27%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +        + ++PS  P            G         
Sbjct: 8   RPIFAWVIALVIMLAGSLAII-----GLPIAQYPSIAPPAV---------GISASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L              N  +TL+F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQIIEQNMTGLDHLLYMSSQSDSSGNVSVTLTFQAGTDPDIAQVQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  + ++  +         ++++         +  + +  ++    + +   +   
Sbjct: 114 AMSLLPQEVQQQGIRVQKTSSSFLMVAAFISGDGSMNNDDLADYVVANIKEPLSRLDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP++L ++  T   +       N        G     +S     
Sbjct: 174 DITLFGSQYSM-RVWLDPNKLTRVQMTPIDVQNAIKAQNAQVAFGKVGGTPSVESQQFTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +S +              +    +        +        +           
Sbjct: 233 TIMGQTRLSTVE-------------EFNNILLRVNQDGSKVRLQDVARVELAGENYDADA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +   T E        L A        +           S   
Sbjct: 280 LYNGQSTAAVAIKLATGANALDTAEKIRGKLDELSAYFPANMKVVYPYDTTPFVQISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+++ +   +  L+   ++ + ++ T  ++S  G ++   ++ G+V
Sbjct: 340 VVQTLIEAIFLVFCVMYLFLQNFRATLIPTIAVPVVLLGTFGVMSAFGFSINTLTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + ++ S   +     ++    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERLMSEEDLSPLEATRKSMTQITGALVGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F++T+  ++++S+  A+ +  A+   +           +       +   
Sbjct: 460 GGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCATLLKPIKHGEFGAQRGFFGWFNRAF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            S        +     +   + +    + ++ ++  +         + +G I   V    
Sbjct: 520 DSGANRYQSGVRKVIKQGARYSIIYVAMLAVLAVLFMRMPTSFLPEEDQGVIMSMVQLPV 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     L  ++   +  +  + +    V      G           +K       P
Sbjct: 580 GATKQRTEVVLADMRDYFLKNEKDNVDSVLTVAGFSFAGSGQNSGMAFIKLKDWKERSSP 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
             +              +    +  
Sbjct: 640 DRSANAIIGRAMGYLFSIKEAQVFA 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V     + +  D            +        +++     +     +++   
Sbjct: 258 SKVRLQDVARVELAGENYDADALYNGQSTAAVAIKLATGANALDTAEKIRGKLDELSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P +             +  I + +  +I +   +   +++  + +   L     + + + 
Sbjct: 318 PANMKVVYPYDTTPFVQISIEEVVQTLIEAIFLVFCVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  + FG   N   +  ++  IG  V+D +VV + +     +    +S  +   KS+
Sbjct: 378 GTFGVMSAFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ERLMSEEDLSPLEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GGS       F++ +   +V++   ++ +   +   
Sbjct: 436 TQITGALVGIALVLSAVFVPMAFFGGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 83/252 (32%), Gaps = 11/252 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +            G    + ++G     +  +  PG S            K 
Sbjct: 789  VRNSTGQMVPFSAFASTEWSFGSPRLERYNGVSAMEIVGEAAPGKSTGDAMAAIEQMVKQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +   +   +      + +++  + +     +   W      +  + L
Sbjct: 849  LPEGIGIEWTGLSLQERQAGSQAPALYAISLLVVFLCLA---ALYESWSIPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    + G+E ++     +LT IG S  + +++ +  ++   LY   +   + + 
Sbjct: 906  GVLGAILAATMRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKE---LYDKGMGLGEAVV 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + VLP+ +    G S   +    +  G++ A   +IF     
Sbjct: 963  EAAR--LRPILMTSLAFILGVLPLVISSGAGASSRNAIGTGVMGGMISATVLAIFFVPLF 1020

Query: 820  LLFIYDWRAKNA 831
             + +     K+ 
Sbjct: 1021 FVLVTRHFTKHN 1032


>gi|285018696|ref|YP_003376407.1| secd export membrane protein [Xanthomonas albilineans GPE PC73]
 gi|283473914|emb|CBA16415.1| probable secd export membrane protein [Xanthomonas albilineans]
          Length = 614

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 145/520 (27%), Positives = 252/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  L+VD+   +   L  ++++LR+ L+   I
Sbjct: 103 NLASTVPGWLSKLGGKPMVLGLDLVGGVHFALQVDQKAALEKRLDAFAEDLRTTLRDNRI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I  +  +          +               +  L    + + I++
Sbjct: 163 PYRSVERRPDNSIQANLGEGADASAARALLAK------------AQPTLSYAVSGQTIAV 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +    + Q+ + AIEQ++  +R R++Q+G++E  IQR G  RI+++LPG QD +  +++
Sbjct: 211 TVPDAELKQIAAGAIEQNLTTLRNRVNQLGVAEPIIQRQGEDRIVVELPGVQDTAEAKRM 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N++     G             +G   L+  +V +SG  +  A+ 
Sbjct: 271 IGATATLEFRGVVDGNAEDAVRSGNIPAEAKVYYRRDNGAPVLLNKRVLVSGDQMVNASV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
           + D      V     +  G R F                    T   +       +  + 
Sbjct: 331 SIDQNGLPAVAVTLNNVAGQRMFDYTSANTGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A   GK   +       A  LA +LRAGSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALAPTRIAGVFGKNFQTTGLEKTEAENLAKLLRAGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  V Y  +G +   ++ +N+++ ++++SL GAT+TLP  AG+ L
Sbjct: 451 RGITAVVYAFLFTLVFFGVYYRMFGAITSVALLMNLLIVVSVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRLGVPPKSAIASGYEKAGGTILDANLTGLIVGVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ RA+ + I   +K   
Sbjct: 571 GPLKGFALTMIIGIFASMFTAITVSRALAVLIYGRRKKLK 610



 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 101/280 (36%), Gaps = 4/280 (1%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +     ++  +    +        G  + V+    +    +    E   +          
Sbjct: 337 LPAVAVTLNNVAGQRMFDYTSANTGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALAPT 396

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +    +Q                +   +          ++GP +  E + +GI  V
Sbjct: 397 RIAGVFGKNFQTTGLEKTEAENLAKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGITAV 456

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           + + +  L++  + ++  F       L++++   +   +LFG    L   A +   +G S
Sbjct: 457 VYAFLFTLVFFGVYYRM-FGAITSVALLMNLLIVVSVMSLFGATMTLPGFAGLALSVGLS 515

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  V++ +R+R+ ++L    +  +  I     +  G  +  ++   I  + +  +G   
Sbjct: 516 VDANVLINERIREELRL---GVPPKSAIASGYEKAGGTILDANLTGLIVGVALYAFGTGP 572

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +  FA+ M  GI  +  ++I ++  + + IY  R K   +
Sbjct: 573 LKGFALTMIIGIFASMFTAITVSRALAVLIYGRRKKLKSV 612



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 64/224 (28%), Gaps = 28/224 (12%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W  +L  ++  +  L ALPN   +    +  ++            RGG       
Sbjct: 2   LEFPRWKYVLILIVLGLSALYALPNVYQKDPSVQITAS------------RGG------- 42

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL- 119
             DD +   +        + LK  GI   S+    + + +     + +    D +   + 
Sbjct: 43  KLDDALRERV-------LADLKAAGITPKSVANEGDSLMVRLPTLQAQTRANDILREQVG 95

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           +     LN+       ++    +  ++          +  ++Q    + +R+D       
Sbjct: 96  ENYTVALNLASTVPGWLSKLGGKPMVLGLDLVGGVHFALQVDQ-KAALEKRLDAFAEDLR 154

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
           T  R              +  +     G  A  +   +      
Sbjct: 155 TTLRDNRIPYRSVERRPDNSIQANLGEGADASAARALLAKAQPT 198


>gi|226954464|ref|ZP_03824928.1| preprotein translocase subunit SecF [Acinetobacter sp. ATCC 27244]
 gi|226834813|gb|EEH67196.1| preprotein translocase subunit SecF [Acinetobacter sp. ATCC 27244]
          Length = 322

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 155/309 (50%), Gaps = 3/309 (0%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           M  +      ++    D   I FM+       ISIL +I SI  + T GLN G+DF GG+
Sbjct: 1   MSDLTQRDSKQYGRPDDLKIIPFMKIAKPAAIISILLTIASIFFIATKGLNLGLDFTGGV 60

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              +    PV  S V   L      D   Q      + +VR+  Q  D +    + + + 
Sbjct: 61  SAELNYQNPVQPSQVTQALNQAGFKDAVVQTLGSTTDLIVRMPVQ--DDLVVEDLSQSIT 118

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           + +     +  +   + VG  +  EL  +    V ++ I MLIY+ IRF++  A+GA+ +
Sbjct: 119 QAVQLPNNMVNVHKVDAVGGAVGNELYVRSAGAVALALILMLIYVTIRFEFKLAMGAVMS 178

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  DI   +G FALF   F+LT +AA+L +IG+S+ND +VV DR+R+N +    + S ++
Sbjct: 179 LFHDIVIIIGAFALFQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKIRDTSS-QE 237

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +ID ++ ETL R+++TS    + V+ M + GG  +  F+  M  G+ V   SSI+I    
Sbjct: 238 IIDIALTETLRRTIHTSATLLLVVVAMFILGGDGLHWFSAAMIVGVFVGTYSSIYIGTAY 297

Query: 820 LLFIYDWRA 828
            L+    R 
Sbjct: 298 ALWRGLSRQ 306


>gi|304395526|ref|ZP_07377409.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. aB]
 gi|304356820|gb|EFM21184.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. aB]
          Length = 1051

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G L  L     +  ++++P+  P               + ++   
Sbjct: 8   RPIFAWVLAIIIMLVGALSIL-----KLPIEQYPNVAPPA-------------IEIQATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S       +T+SF      +    +V  
Sbjct: 50  PGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSDSSGTLTLTISFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    D       + S  I     D I  +
Sbjct: 110 KLQLATPLLPQEVQQQGIQVKKSSSSFLMVAGFISDDDNMTQNDISDFISSSIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     T   +       N        G        
Sbjct: 170 KGVGDTQVFGAQ-YAMRIWMDPHKLNNYNLTPVDVISALNTQNTQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTSTD-------------EFGKILLKVNEDGSQVRLRDVARIELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A L+         +           
Sbjct: 276 EIVARYNGKPASGIGIKLATGANALDTANAVKEELAKLQPTFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+++  G ++   ++
Sbjct: 336 SIFEVVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVINAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLAAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A  +  A+         +K I      +   
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVAFILTPALCAT-----MLKPIKKGDHGKTTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++    V         +   +  +
Sbjct: 511 FFGWFNRIFDKSTSHYVDGVGHMVRSTGRYMLIY 544



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 84/244 (34%), Gaps = 8/244 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L +     ++  N        ++L            V E + K          +
Sbjct: 264 DVARIELGAENYEIVARYNGKPASGIGIKLATGANALDTANAVKEELAKLQPTFPAGLKV 323

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
                  P +   +    +  +I + + + + +++  + +   L     + + +  T   
Sbjct: 324 VYPYDTTPFVKISIFE-VVKTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAV 382

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              FG   N   +  ++  IG  V+D +VV + +     +    +  ++   +S+ +  G
Sbjct: 383 INAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSMEQIQG 440

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V  ++      +PMA +GGS       F+I +   + ++   + FI  P L       
Sbjct: 441 ALVGIALVLAAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVLVA-FILTPALCATMLKP 499

Query: 828 AKNA 831
            K  
Sbjct: 500 IKKG 503



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 63/166 (37%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS I + + +   ++ W      +  + L +   L F
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLF 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+  ++  V  +LT IG S  + +++ +  +  M          +   ++    L 
Sbjct: 915  TTLRGLSNDVYFVVGLLTTIGLSTKNAILIVEFAKDLMDKEGKG--LIEAALEACRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +    +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISTGAGSGSQNAVGTGVIGGMVTATILAI 1018


>gi|288962606|ref|YP_003452900.1| hydrophobic/amphiphilic exporter-1 [Azospirillum sp. B510]
 gi|288914872|dbj|BAI76356.1| hydrophobic/amphiphilic exporter-1 [Azospirillum sp. B510]
          Length = 1054

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 144/521 (27%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  ++++P   P               + +    
Sbjct: 8   RPVFAWVIAIVIMMAGALAIL-----RLPVEQYPKIAPPT-------------VSITASY 49

Query: 63  DDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                      +    ++  + L        +     N  ITL+F      +    +V  
Sbjct: 50  PGASAKTLEDTVTQVIEQKMTGLDNFRYMSSNSDSSGNVTITLTFEPQANPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  L  +      +++             + +  +     D I   
Sbjct: 110 KLQLAVPLLPQEVQQRGLQVSKAGNDFLLVVGFVSGDGRLSQGDIADYVTSNLQDTISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP  L     TT  +S      N        G        
Sbjct: 170 EGVGDVTVFGPQ-HAMRIWLDPDALNNFALTTTDVSNAIKTQNAQVSAGQLGGAPAIAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        I       
Sbjct: 229 QINATITAQSRL-------------QTPEQFGAILLRVNPDGSQVRLRDVARIEIGSETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         I           
Sbjct: 276 EINAAYNGKPAAGMGIKLATGANALNTAAAVKARVAELQPFFPTGIEVIYPYDTTPFVQL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++    +LS+ G ++ + ++
Sbjct: 336 SIHEVIKTLFEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGAFGVLSVFGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMDQITGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + FFGG      R F++T+  ++ +S+  A+ +  A+   I
Sbjct: 456 MAFFGGSAGAIYRQFSLTIVSAMALSVLVALVLTPALCATI 496



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 84/217 (38%), Gaps = 8/217 (3%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            + +   G    L         + A    +  ++      + +    +T         E+
Sbjct: 281 YNGKPAAGMGIKLATGANALNTAAAVKARVAELQPFFPTGIEVIYPYDTTPFVQLSIHEV 340

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           I+     +++  + M +++     +   L     + + +    G  ++FG   N+  +  
Sbjct: 341 IKTLFEAIVLVFVVMYLFLQ---NFRATLIPTIAVPVVLLGAFGVLSVFGFSINVLTMFG 397

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  IG  V+D +VV + +     +    +S R+   KS+++  G  V  ++      +P
Sbjct: 398 MVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSMDQITGALVGIALVLSAVFVP 455

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           MA +GGS   +   F++ +   + ++   ++ +   +
Sbjct: 456 MAFFGGSAGAIYRQFSLTIVSAMALSVLVALVLTPAL 492



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 87/268 (32%), Gaps = 13/268 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +   + + V  S   +   +     +   N     N           
Sbjct: 783  PYRMQPSDIDRWYVRNASGQMVPFSAFTTAQWTYGSPKLERYNGSSSVNIQGAAAPGISS 842

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   +  M+K     I    T  + E              +  +  S I + + +   
Sbjct: 843  GEAMAEMETMMKTLPPGIGYEWTGLSYEERLSGSQAP----ALYAL--SMIIVFLCLAAL 896

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W   +  I  + L +   +    L G+  ++     +LT IG S  + +++ +  + 
Sbjct: 897  YESWSVPVSVILVVPLGVIGAVIAATLRGLPSDVYFQVGLLTTIGLSAKNAILIVEFAK- 955

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
               LY   +  ++   ++  + L   + TSMA  + VLP+A+    G     +  + +  
Sbjct: 956  --SLYDQGMDLKEAAAEACRQRLRPIIMTSMAFILGVLPLAISTGAGSESQNAIGVGVMG 1013

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++ A   ++       + +Y    +  
Sbjct: 1014 GMISATLLAVLFVPVFFVAVYRLFVRRR 1041


>gi|62289286|ref|YP_221079.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           1 str. 9-941]
 gi|82699217|ref|YP_413791.1| acriflavin resistance protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023540|ref|YP_001934308.1| Acriflavin resistance protein [Brucella abortus S19]
 gi|237814778|ref|ZP_04593776.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Brucella
           abortus str. 2308 A]
 gi|254688606|ref|ZP_05151860.1| Acriflavin resistance protein [Brucella abortus bv. 6 str. 870]
 gi|254693088|ref|ZP_05154916.1| Acriflavin resistance protein [Brucella abortus bv. 3 str. Tulya]
 gi|254696729|ref|ZP_05158557.1| Acriflavin resistance protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729639|ref|ZP_05188217.1| Acriflavin resistance protein [Brucella abortus bv. 4 str. 292]
 gi|256256854|ref|ZP_05462390.1| Acriflavin resistance protein [Brucella abortus bv. 9 str. C68]
 gi|260545957|ref|ZP_05821698.1| acriflavin resistance protein [Brucella abortus NCTC 8038]
 gi|260754076|ref|ZP_05866424.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           6 str. 870]
 gi|260757298|ref|ZP_05869646.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           4 str. 292]
 gi|260761120|ref|ZP_05873463.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260883103|ref|ZP_05894717.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           9 str. C68]
 gi|261213323|ref|ZP_05927604.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           3 str. Tulya]
 gi|297247704|ref|ZP_06931422.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella abortus
           bv. 5 str. B3196]
 gi|62195418|gb|AAX73718.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           1 str. 9-941]
 gi|82615318|emb|CAJ10279.1| Acriflavin resistance protein:Hydrophobe/amphiphile efflux-1 HAE1
           [Brucella melitensis biovar Abortus 2308]
 gi|189019112|gb|ACD71834.1| Acriflavin resistance protein [Brucella abortus S19]
 gi|237789615|gb|EEP63825.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Brucella
           abortus str. 2308 A]
 gi|260097364|gb|EEW81239.1| acriflavin resistance protein [Brucella abortus NCTC 8038]
 gi|260667616|gb|EEX54556.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           4 str. 292]
 gi|260671552|gb|EEX58373.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           2 str. 86/8/59]
 gi|260674184|gb|EEX61005.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           6 str. 870]
 gi|260872631|gb|EEX79700.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           9 str. C68]
 gi|260914930|gb|EEX81791.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           3 str. Tulya]
 gi|297174873|gb|EFH34220.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella abortus
           bv. 5 str. B3196]
          Length = 1051

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 87/268 (32%), Gaps = 15/268 (5%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAAS-SSIFIAAPILLFIYDWRAKNA 831
            ++ A   +S FI  P+   +   +    
Sbjct: 1007 MLAATFIASFFI--PMFYSLIARKPPKK 1032



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIASFFIPMFYSLIARKPPKKH 1033


>gi|301047878|ref|ZP_07194925.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 185-1]
 gi|300300221|gb|EFJ56606.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 185-1]
          Length = 1034

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKYVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIQEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPREATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 95/254 (37%), Gaps = 7/254 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVL 635
           G + L V ++  V      + +E            +G+    + ++   G +   T + +
Sbjct: 247 GKVTLRVNSDGSVVRLKYVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAI 306

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694
           +    ++    P               +  I++ +  +  + + + + +++  +     L
Sbjct: 307 KAKLAELQPFFPQGMKVLYPYDTTPFVQLSIQEVVKTLFEAIMLVFLVMYLFLQNMRATL 366

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                + + +  T    A FG   N   +  ++  IG  V+D +VV + +     +    
Sbjct: 367 IPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDK 424

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASS 811
           +  R+  +KS+++  G  V  +M      +PMA +GGS       F+I +   + ++   
Sbjct: 425 LPPREATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLV 484

Query: 812 SIFIAAPILLFIYD 825
           ++ +   +   +  
Sbjct: 485 ALILTPALCATLLK 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|254707965|ref|ZP_05169793.1| Acriflavin resistance protein [Brucella pinnipedialis M163/99/10]
 gi|256060443|ref|ZP_05450614.1| Acriflavin resistance protein [Brucella neotomae 5K33]
 gi|256368753|ref|YP_003106259.1| hydrophobe/amphiphile efflux-1 family protein [Brucella microti CCM
           4915]
 gi|261315457|ref|ZP_05954654.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis M163/99/10]
 gi|261324432|ref|ZP_05963629.1| hydrophobe/amphiphile efflux-1 family protein [Brucella neotomae
           5K33]
 gi|255998911|gb|ACU47310.1| hydrophobe/amphiphile efflux-1 family protein [Brucella microti CCM
           4915]
 gi|261300412|gb|EEY03909.1| hydrophobe/amphiphile efflux-1 family protein [Brucella neotomae
           5K33]
 gi|261304483|gb|EEY07980.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis M163/99/10]
          Length = 1051

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|225626819|ref|ZP_03784858.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti str.
           Cudo]
 gi|260168085|ref|ZP_05754896.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. F5/99]
 gi|261757534|ref|ZP_06001243.1| acriflavin resistance protein [Brucella sp. F5/99]
 gi|225618476|gb|EEH15519.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti str.
           Cudo]
 gi|261737518|gb|EEY25514.1| acriflavin resistance protein [Brucella sp. F5/99]
          Length = 1051

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 61/538 (11%), Positives = 136/538 (25%), Gaps = 57/538 (10%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114
             +     L   S+ +R          +    +    ++     + +   D + +      
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 115  VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ-----NNIDQVISHAIEQSMEIIRQ 169
                 + +   +N   K  +++      I  + +         D+        +      
Sbjct: 641  ARNLPRTIMG-MNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGDVESLTQATKLI 699

Query: 170  RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
                    E    R      + Q   + D  + + +      +                 
Sbjct: 700  TEAAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG-------- 751

Query: 230  VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                         V D       +     +  + +     +   F    +     +    
Sbjct: 752  ----------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDALV 801

Query: 290  IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
              K +          A    +   +     +    I+    +AA +      I       
Sbjct: 802  TVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGSAY 861

Query: 350  RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSL 407
            + V           G+ A++ GL+++ L +   Y      L    ++   +   L    L
Sbjct: 862  QEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLATDL 915

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  ++
Sbjct: 916  RGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVMTS 975

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 976  LAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|326560223|gb|EGE10611.1| preprotein translocase subunit SecF [Moraxella catarrhalis 7169]
          Length = 378

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 156/296 (52%), Gaps = 4/296 (1%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           LI +   I FM+     +  S+L  +  +  +   GLN+G+DF GG+   V   +PV+ +
Sbjct: 60  LIANQRIIPFMKLEKPMIVFSVLSILIGLIAIIVKGLNFGLDFTGGVSANVAYEQPVEQA 119

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   L      D   Q     +  LVRL  Q G +   +  L+ +   +      STI 
Sbjct: 120 QVIKALADNGFNDAVVQYLGTRQELLVRLPPQDGSAENLSASLDQI---LNFPNNPSTID 176

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +  I+G ++  E+    ++ + ++   MLIY+  RF++  ALGA+  L  D+   +G FA
Sbjct: 177 SISIIGSQLGNEIYLNSLLAMSVALGMMLIYVATRFQFKLALGAVLALFHDVIIVVGIFA 236

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           + G  F+LT +AAVL LIGYSVND +VVYDR+R+N +     ++ R ++D S+ ETL R+
Sbjct: 237 IMGWPFDLTVLAAVLALIGYSVNDTIVVYDRIRENFRR-VRGLTPRQVLDLSLTETLRRT 295

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + T    F+ V+ M   GG  +  F++ +  G++    SSI++A+ I L +   R 
Sbjct: 296 IMTVGTVFVVVVAMLFLGGDGLYWFSVALFIGLIAGTYSSIYVASSIPLMMGLSRE 351


>gi|269138465|ref|YP_003295165.1| aminoglycoside/multidrug efflux system [Edwardsiella tarda EIB202]
 gi|267984125|gb|ACY83954.1| aminoglycoside/multidrug efflux system [Edwardsiella tarda EIB202]
 gi|304558491|gb|ADM41155.1| Putative aminoglycoside efflux pump [Edwardsiella tarda FL6-60]
          Length = 1038

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 80/689 (11%), Positives = 185/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL        Q  ++++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIFSLAGLLAI-----HQLPIEQYPNLAPPT-------------VRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDGLMYMSSQSSSSGSASITLTFQSGTDPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     KL  + +   +  +   + S++              + +  +     D +   
Sbjct: 110 QLSAATRKLPQEVQLQGIRVSKSGDSSLMTVAFVSTDGSMDRQDIADYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L Q   TT  +       N+       G        
Sbjct: 170 DGVGSVDAFGSQ-YAMRIWLDPTKLNQFRLTTQDVVSAIKSQNSQIAVGQIGATPAVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      +       
Sbjct: 229 ALNATLMAQSQL-------------QTPAQFRAITLRVNSDGSLVTLGDVAQVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T        A L                      
Sbjct: 276 DYLSRFNGKPASGMSIKLASGANELATDARVKAKLAQLEPYFPHGLKVEYAYETTPFVQA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +V+++ +   +  L+   ++ + ++ T A+L  +G ++   ++
Sbjct: 336 AIQDVVKTLFEAIALVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVLFAMGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERLMSEEGLSPREATRKSMDQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-----KSIDINPL 528
           + FFGG      R F+IT+  +++ S+  A+ +  A+   ++R         K       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMIFSVLVALILTPALCATLLRPVNKTQLHAKKGFFGWF 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-----KGGIQLGV 583
           +R F          +       G S+L  + S+  L T  L+    F     +G     +
Sbjct: 516 NRTFERSALRYENGVGRVVRNGGRSMLLYLLSLGGLGTLYLHLPTSFLPLEDRGVFMTQI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++   +  +  D +  F +      G+     R+   +K    
Sbjct: 576 QLPVGATQQETLKVVEKVERYLLVDEGKDVQSVFSIVGAGPGGNGQNVARMFVRLKPWDQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         +    +    +  
Sbjct: 636 RTGDDDSAAAIIERASRAFANIREARVFA 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 83/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +A    ++    ++    P 
Sbjct: 260 VTLGDVAQVELGAEKYDYLSRFNGKPASGMSIKLASGANELATDARVKAKLAQLEPYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  +  +   + + +++  +     L     + + +  T
Sbjct: 320 GLKVEYAYETTPFVQAAIQDVVKTLFEAIALVFLVMYLFLQNLRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +S R+   KS+++
Sbjct: 380 FAVLFAMGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERLMSEEGLSPREATRKSMDQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +GG+       F+I +   ++ +   ++ +   +   + 
Sbjct: 438 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMIFSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 R 498



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 79/248 (31%), Gaps = 10/248 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +            G    + ++GE    +  +   G S  +   +       
Sbjct: 789  VRNSQGDMVPFSAFANTRWNYGSPRLERYNGEAAVEIVGEAAQGISTGRAMAIMEQLVSE 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  + +     +   W      +  + L
Sbjct: 849  LPSGFGLEWTGMSYQERLSGAQAPALYALSLLVVFLCLA---ALYESWSIPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    L G+E ++     +LT+IG S  + +++ +   +   L  +     +   
Sbjct: 906  GVLGAVCATWLRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LNRSGKDLLEATL 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    VLP+ +    G     +    +  G++ A   SI+   P+
Sbjct: 963  EACRLRLRPILMTSLAFIFGVLPLTLSHGAGSGSQHAVGTGVLGGMIAATLLSIYFV-PL 1021

Query: 820  LLFIYDWR 827
               +   R
Sbjct: 1022 FFILVRRR 1029


>gi|271499617|ref|YP_003332642.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Dickeya
           dadantii Ech586]
 gi|270343172|gb|ACZ75937.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           dadantii Ech586]
          Length = 1048

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 181/686 (26%), Gaps = 49/686 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  M+   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIMVMLTGTLAIL-----KLPIAQYPTIAPPA-------------VQITATY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +   +    ++  + + K      +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTLQDTVTQVIEQNMNGIDKLLYMSSNSDSSGTVQITLTFDADANPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++     D       + +  +     D I   
Sbjct: 110 KLQLATPLLPQEVQQQGVSVQKSSSSFLMVLGFVSDDSSVTQQDIADFVGSTIKDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     TT+ +     + NN       G        
Sbjct: 170 RGVGDTQLFGAQ-YAMRIWLDPDKLNNYQLTTSDVVTAIQVQNNQIAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        I       
Sbjct: 229 KLNASIIAQTRL-------------NSPEQFGNILLKVNQDGSQVRLNNVARIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 TTIARYNGRPAAGLGIKLATGANALDTASAVKAEIAKLQPTFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIYEVVKTLVEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F+IT+  ++++S+  A+ +  A+   I++              F  
Sbjct: 456 MAFSGGSTGAIYRQFSITIVSAMVLSVLVALILTPALCATILKPVPNHGEKKGFFGWFNR 515

Query: 534 IPDCIAIQF--------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           + D     +             + V   ++ +                + +G +   V  
Sbjct: 516 LFDKSTHHYTSSVANILRSTGRYLVVYLLVVASLGFAFTQIPSSFLPQEDQGVLLTMVQL 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                    +  L+ +    +  +  + +  F V      G           +       
Sbjct: 576 PVGATQESTQKVLDQVSDYYLHNEKDNVKSVFTVNGFGFAGRGQNMGISFASLNDWDERK 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIV 671
              + +            ++    ++
Sbjct: 636 GAANKVDAIIGRAFGAFSQIKEAIVI 661



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L+ V       +      +        L        +++     ++    K+    
Sbjct: 258 SQVRLNNVARIELGGENYTTIARYNGRPAAGLGIKLATGANALDTASAVKAEIAKLQPTF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISIYEVVKTLVEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +PMA  GGS       F+I +   +V++   ++ +   +
Sbjct: 436 GQIQGALVGIALVLSAVFIPMAFSGGSTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 74/229 (32%), Gaps = 7/229 (3%)

Query: 591  LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             S       +       + +   E+   +      G++       E +         L  
Sbjct: 791  TSNQMVPFSAFASAHWEYGSPRLERYNGLPSVELVGEAAPGKSTGEAMALMEELASQLPP 850

Query: 651  IQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                +  G      L       ++I  + +  L    +   W      +  + L +   +
Sbjct: 851  GIGFDWTGMSYQERLAGNQAPALLIISAIVVFLCLAALYESWSIPFSVMLVVPLGVFGAV 910

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                L G+E ++     +LT IG S  + +++ +  +  M+         +    ++   
Sbjct: 911  MAAGLRGMENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LVEATLDAVRMR 968

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            L   + TS+A  + V+P+ +    G     +    +  G++ A   +I+
Sbjct: 969  LRPILMTSLAFILGVVPLVISTGAGSGAQNAVGTGVMGGMITATVLAIY 1017


>gi|298370064|ref|ZP_06981380.1| protein-export membrane protein SecD [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298281524|gb|EFI23013.1| protein-export membrane protein SecD [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 620

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 167/506 (33%), Positives = 279/506 (55%), Gaps = 28/506 (5%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  M K   N + LGLDLRGG H  ++VD    +    + YS ++R  L++  I
Sbjct: 104 NLLADSPEWMAKINANPMFLGLDLRGGVHFTMQVDMKAAMQKTFERYSGDIRRELRRRKI 163

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++RQ +N + + F D+   +    ++                    +      + + 
Sbjct: 164 RFGTIRQAENGLIVPFQDASDVQKAIPELQKLFVEAK------------LEADGSNLILS 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           LS++ + +V S A++Q++  +  R++++G++E  IQ+ G  RI++QLPG QD ++ + ++
Sbjct: 212 LSEDAMQKVRSDAVKQNITTLHNRVNELGVAEPVIQQSGIDRIVVQLPGVQDTAKAKDII 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVR--------FLRDSDGNQYLVEDKVEISGIHLNGAT 258
           G TA +    V  + +K     G          +    +    LV  +VE++G ++N A 
Sbjct: 272 GRTATLEVRMVEDDPAKVQAALGGNVPSGYELLYSAGENPAPTLVSKQVELTGDNINDAQ 331

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR----VLTAPVINQAIPS 314
            +FD       V I+ D  G   F E+T  N+GK +A+VL  +    V+TAPVI  AI  
Sbjct: 332 PSFDEMGSPA-VSINLDGSGGTIFGELTAANVGKRMAMVLIDQGKSEVVTAPVIRSAITG 390

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+ QISG+ T   A   + +LRAGSL   + IVEER +G  LG ++I KG  + + G  +
Sbjct: 391 GRVQISGSMTTAEANDTSLLLRAGSLAAPMEIVEERTIGPSLGKENIQKGFDSTLWGFAV 450

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           + +FM+V Y   G+ +  ++  N++  +A+LS L ATLTLP IA + L +G+A+DSN+L+
Sbjct: 451 VAVFMVVYYRMMGVFSTIALTANILFLIAILSALQATLTLPGIAALALTLGMAIDSNVLI 510

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
           NERIREE R       ++++G+  A+STI DSN+T+LIA + L  FG G VRGFA+   L
Sbjct: 511 NERIREELRAGVPPQQAINLGYQHAWSTIVDSNLTSLIAGIALLIFGSGPVRGFAVVHCL 570

Query: 495 SILISMFTAISIVRAMMIFIIRYKKM 520
            I+ SM++++ + RA++      ++ 
Sbjct: 571 GIVTSMYSSVVVSRALVNLWYGRRRK 596



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 84/208 (40%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I+KG    +     + 
Sbjct: 393 VQISGSMTTAEANDTSLLLRAGSLAAPMEIVEERTIGPSLGKENIQKGFDSTLWGFAVVA 452

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + ++    + +   L  +I   +   +       L  +AA+   +G +++  V++ 
Sbjct: 453 VFMVVYYRM-MGVFSTIALTANILFLIAILSALQATLTLPGIAALALTLGMAIDSNVLIN 511

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + ++G   +  FA+  
Sbjct: 512 ERIREELRA---GVPPQQAINLGYQHAWSTIVDSNLTSLIAGIALLIFGSGPVRGFAVVH 568

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GIV +  SS+ ++  ++   Y  R K
Sbjct: 569 CLGIVTSMYSSVVVSRALVNLWYGRRRK 596



 Score = 38.5 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 18/44 (40%)

Query: 2  RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRIS 45
          R   W  +L +    + ++ +LPN   ++   +  +      I+
Sbjct: 3  RYPLWKYLLIAFTVVLAVIYSLPNLFGETPAVQVSTNRQSIIIN 46


>gi|254709456|ref|ZP_05171267.1| Acriflavin resistance protein [Brucella pinnipedialis B2/94]
 gi|256030950|ref|ZP_05444564.1| Acriflavin resistance protein [Brucella pinnipedialis M292/94/1]
 gi|261316978|ref|ZP_05956175.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis B2/94]
 gi|265988014|ref|ZP_06100571.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis M292/94/1]
 gi|261296201|gb|EEX99697.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis B2/94]
 gi|264660211|gb|EEZ30472.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis M292/94/1]
          Length = 1051

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|167765034|ref|ZP_02437155.1| hypothetical protein BACSTE_03428 [Bacteroides stercoris ATCC
           43183]
 gi|167697703|gb|EDS14282.1| hypothetical protein BACSTE_03428 [Bacteroides stercoris ATCC
           43183]
          Length = 1010

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 89/687 (12%), Positives = 189/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLSTVLTLIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q  ++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGSSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +       + I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N            +  +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPIDVKNAVDNENVELPSGSIEGNTIELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E G R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLILKEDGNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S   
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIQIADAVYERMENMKKDLPEDVHYSYGFDNTKFIRASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL----I 534
           G      R F+I +  S++IS F A++    +   ++  ++ +S        FF     +
Sbjct: 453 GMTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREKQSWFYRKTEPFFEGLNNL 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  F+R R+  +  +    +               ++ +  I +       V    
Sbjct: 513 YSRSLAAFLRKRWIALPFTAATILIIGFLWNHIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S              G  N  + L+        Q  V E + K + +
Sbjct: 573 IRDYTEDINQLVDSIVPDAEAVTARVSSGSGNVRITLKDMQDRDYTQMEVAEKLSKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMAHSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 74/240 (30%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V E ++    ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIQIADAVYERMENMKKDLPEDVHYSYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASIDEVKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ A++  +G  V+D +V+ + +          +  ++   +   E     + 
Sbjct: 380 GFSINVLSMLAIVLAVGLVVDDAIVMTENI---YVRIEKGMPPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G        F+I ++  +++++ +++     +   +   R K +
Sbjct: 437 TTITLVAVFFPIVFMDGMTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 57/146 (39%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F    GI  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGGITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +   T       I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQETGEDKMQAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +V+   +++I   I  ++   R+K  
Sbjct: 983  LVSTLLTMYIVPAIYSYVSTNRSKLK 1008


>gi|27366962|ref|NP_762489.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio vulnificus CMCP6]
 gi|27358529|gb|AAO07479.1| Inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio vulnificus CMCP6]
          Length = 1050

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 77/692 (11%), Positives = 184/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAIALAV-----LPVAEYPKISPP-------------SVSVTAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ +       N        G     + 
Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYSALSQQNVQVAAGRIGAAPYNNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANSDGSSVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGNGKFRGRDASIVALSLQSDANALESGQAVMELLERLSGNFPAGMAYETSYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMLATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G++L IG+ VD  ILV E +     K+   S   +  M        I  S +  L   
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVF 456

Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +    L    G   R FA+T+ +S++IS   A+++  A+   +            K+ + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLAPALCSLVLKQGGENTANWFKTFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  +     T       + KG + + V  
Sbjct: 517 GLERVTERYGQVAGFLVKKSLLLVAFFMVAVAAVAFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     +   +       
Sbjct: 577 PDSASLSRTEEVTNHLLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +   +  +I+     +    V+ + 
Sbjct: 637 GLN-GNHSANAIAQRINGRAAMELPQAVVFAM 667



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 76/197 (38%), Gaps = 7/197 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A   +LE +       +   T  +T +   +  + +++  I  +++      +++ 
Sbjct: 303 ESGQAVMELLERLSGNFPAGMAYETSYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLG 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L  +  + + +  T       G   N   +  ++  IG  V+D ++V + + 
Sbjct: 363 ---SARATLIPVVAIPVSLIGTFAVMLATGFTINTVTLFGLILAIGIVVDDAILVIENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
                   SIS R     ++ E  G  + +++      LP+A+  G        FA+ + 
Sbjct: 419 DTTMAKDPSISPRKATLMAMKEVTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTIC 478

Query: 803 FGIVVAASSSIFIAAPI 819
             +V+++ +++ +A  +
Sbjct: 479 ISVVISSINALTLAPAL 495



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 48/407 (11%), Positives = 105/407 (25%), Gaps = 23/407 (5%)

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LL      P + G+ +  G +  +    +       + +     +   G   A +     
Sbjct: 592 LLNMVEQEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWEMRNGLNGNHSANAIAQRI 651

Query: 467 NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
           N      +   V+F  G  AV G     G    +      S   +   M   I    +  
Sbjct: 652 NGRAAMELPQAVVFAMGPPAVPGMGAASGFEFALEDTLGRSRTDLAMVMGEMIQAANQAP 711

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
            I     +    +P                            L +  +N    F    ++
Sbjct: 712 EIAYTFSTFRANVPHYYVDIDREKAQQLGIPLSSIFQTLQGNLGSMYVNDFTMFGKNFRV 771

Query: 582 GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            + A+              V  S       S  +        D    + +          
Sbjct: 772 TMQADSEHRSSMDDLSRFHVRTSSGEMVPLSTLLSYEQVFEPDVAWRYNMYRSAIIQGQP 831

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
           A           +  I      Q        ++ + +  G   +   +   + IY   + 
Sbjct: 832 APGYSSGDAIAAMERIAAELLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892 QYESWTIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
              +     ++  +   +           TS +  + + P+    G+
Sbjct: 952 --QQREDKEVAIDEAAVQGGKLRFRAVNMTSWSFILGIFPLIFAAGA 996


>gi|167561739|ref|ZP_02354655.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           oklahomensis EO147]
          Length = 1066

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGIAAIF-----TLPISQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+RL     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTRLTNYGLTPVDVTTAITQQNVQIAGGQIGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAKIGLGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 SFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDDLSKYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPREATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVTAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRNFNASRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        L        +++A  + +      +++  
Sbjct: 258 SQVRLKDVAKIGLGGENYSFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDDLSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S R+   K++
Sbjct: 378 GTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVTAMVLSVLVALILTPAL 492



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMTAMESLAKKLPNGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     +  +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQSEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 61/516 (11%), Positives = 142/516 (27%), Gaps = 32/516 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    + + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLNDEKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYAQRQHANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA--IEQSMEIIRQRIDQIGISES 179
            +  +        ++         +  +     ++  +A     ++   R ++  +   + 
Sbjct: 650  MFGRYAGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGHGHDALMAARNQLLMLAAKDP 709

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            T+Q +  + +      + D  R +        ++   +    S       V    D+DG 
Sbjct: 710  TLQGVRPNGLNDTPQYKVDIDREKANALG---VTASAIDQTFSIAWASSYVNNFLDTDGR 766

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                  KV +        T +     +            A      T  +        + 
Sbjct: 767  I----KKVYVQSDAPFRMTPDDMNIWYVRNGSGGMVPFSAFSTGHWTYGSPKLERYNGIS 822

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
               +                    T   +         G     L+  E ++        
Sbjct: 823  AMEIQGQAAPGKSTGQA------MTAMESLAKKLPNGIGYSWTGLSFQEIQSGSQA---- 872

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   AI   +V + L  +             + L VI  L   +L G    +    G
Sbjct: 873  ---PILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVG 929

Query: 420  IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            ++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  + L 
Sbjct: 930  LLTTVGLSAKNAILIVEFARELQQSEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLA 989

Query: 479  FF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                 G  +       +   ++ + F AI ++    
Sbjct: 990  ISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|259909230|ref|YP_002649586.1| Acriflavine resistance protein B [Erwinia pyrifoliae Ep1/96]
 gi|224964852|emb|CAX56374.1| Acriflavine resistance protein B [Erwinia pyrifoliae Ep1/96]
 gi|283479280|emb|CAY75196.1| multidrug efflux transporter [Erwinia pyrifoliae DSM 12163]
          Length = 1046

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/684 (10%), Positives = 175/684 (25%), Gaps = 43/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  ++++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGTLSIL-----KLPIEQYPNVAPPAIE---------ITATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        S       ++TL+F      +    +V   LQ 
Sbjct: 54  AKTLQDSVTQVIEQNMNGIDGLMYMGSSSDSSGTLQLTLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D       + S  +     D I       
Sbjct: 114 ATPLLPQEVQQQGIRVQKSSSSFLMVAGFINDSGTMTQNDISDYVGSNIKDPISRVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   +       N        G            
Sbjct: 174 DTQLFGAQ-YAMRIWMDPHKLNNYQLTPVDVISAINTQNAQVAAGQLGGSPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        R       +I           
Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNADGSRVRLSDVAHIELGGENYEVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          L          +           S + 
Sbjct: 280 RYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFFPSGLKVVYPYDTTPFVKISINE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A++S  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMDQIQGALVGIALVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++++S+  A+ +  A+   +                   +   
Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVIVALILTPALCATMLKPVNKGDHGKTTGFFGWFNRLF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + V   ++    +   L         + +G          
Sbjct: 520 DKSTHHYTDSVGHIVRSTGRYLVIYLLIVVGMAFLFLRLPTAFLPEEDQGVFLTMAQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +    ++ +  +    F V      G           +K        
Sbjct: 580 GATQERTQKVLDQVTDYYLNKEKANVNSVFTVNGFGFAGRGQNTGLAFVSLKPWDERSGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671
            + +             +    ++
Sbjct: 640 ANKVPAITGRAMGALSAIKDAMVI 663



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       +  ++  +      + L        +++     ++    K+    
Sbjct: 258 SRVRLSDVAHIELGGENYEVIARYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 436 DQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALILTPAL 492



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 7/193 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G   A     E +         L T    +  G      L       +  IS I + + +
Sbjct: 828  GQPAAGKSSGEAMDLMQELASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L F  L G+  +   V  +LT IG S  + +++ + 
Sbjct: 888  AALYESWSIPFAVMLVVPLGVIGALIFTTLRGLSNDAYFVVGLLTTIGLSAKNAILIVEF 947

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  M+         +   +++   L   + TS+A  + VLP+A+    G     +    
Sbjct: 948  AKDLMEKEGKG--LVEATLEAVRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTG 1005

Query: 801  MAFGIVVAASSSI 813
            +  G+V A   +I
Sbjct: 1006 VMGGMVTATVLAI 1018


>gi|306842439|ref|ZP_07475090.1| hydrophobe/amphiphile efflux-1 family transporter [Brucella sp.
           BO2]
 gi|306844932|ref|ZP_07477514.1| hydrophobe/amphiphile efflux-1 family transporter [Brucella sp.
           BO1]
 gi|306274761|gb|EFM56545.1| hydrophobe/amphiphile efflux-1 family transporter [Brucella sp.
           BO1]
 gi|306287295|gb|EFM58775.1| hydrophobe/amphiphile efflux-1 family transporter [Brucella sp.
           BO2]
          Length = 1051

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVNKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRIWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDVAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLDGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVIHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E+I   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVIHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLNQASENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|37519361|gb|AAQ92181.1| inner membrane pump protein [Pseudomonas fluorescens]
          Length = 1048

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 188/687 (27%), Gaps = 39/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++             + S  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKSVKNFLLVIGVVSRDGSMTKDDLSNYIVSNMQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRVWLDPAKLNNFSLTPVDVKAAIAAQNIQVSSGQLGGLPAAPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++G          
Sbjct: 233 TIIGKTRL-------------QTAEQFNKILLKVNKDGSQVRLSDVADVGLGGENYSINA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L+         +           S   
Sbjct: 280 QFNGAPASGLAVKLANGANALDTAKALRNTINTLKPFFPQGMEVVFPYDTTPVVTESIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
            G      + F+IT+  ++ +S+  A+    A+   +        +   K       +R 
Sbjct: 460 SGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKAIPKGEHGTPKRGFFGWFNRS 519

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           F        + +          +L  +  +  +          F      GVL  +    
Sbjct: 520 FDRGVKSYERGVGNMLAHKAPYLLAYLIIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTP 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +   +    + I ++     D E + +  +    G + A       +   + +       
Sbjct: 580 AGSSAQRTQVVIDEMRSYLLDKESSAVASVFTVNGFNFAGRGQSSGLAFIMLKPWDQRDA 639

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI 678
           +N+       +++        ++ +  
Sbjct: 640 ENSVFKLAARAQQHFFTFRDAMVFAFA 666



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       +   I+ Q      + L        +++   + L      +    
Sbjct: 258 SQVRLSDVADVGLGGENYSINAQFNGAPASGLAVKLANGANALDTAKALRNTINTLKPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I+  +  ++ + + + + +++  + +   +    T+ + + 
Sbjct: 318 PQGMEVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFGILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA + GS       F+I +   + ++   ++     +
Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITIVSAMALSVLVALIFTPAL 492



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 67/161 (41%), Gaps = 7/161 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             +S + + + +   ++ W   +  +  + L I   L   +L G+  ++     +LT IG 
Sbjct: 876  ALSLLMVFLCLAALYESWSIPIAVMLVVPLGIIGALLATSLRGLSNDVYFQVGLLTTIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +  ++   L+    S RD   ++    L   + TS+A  + V+P+A+    
Sbjct: 936  AAKNAILIVEFAKE---LHEQGRSLRDAAIEACRMRLRPIIMTSLAFVLGVVPLAISTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G     +    +  G++ A   +IF      + +     + 
Sbjct: 993  GSGSQHAIGTGVIGGMITATVLAIFWVPLFFVTVSSIGQRK 1033


>gi|310766866|gb|ADP11816.1| Acriflavine resistance protein B [Erwinia sp. Ejp617]
          Length = 1046

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 69/684 (10%), Positives = 175/684 (25%), Gaps = 43/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  ++++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGTLSIL-----KLPIEQYPNVAPPAIE---------ITATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        S       ++TL+F      +    +V   LQ 
Sbjct: 54  AKTLQDSVTQVIEQNMNGIDGLMYMGSSSDSSGTLQLTLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D       + S  +     D I       
Sbjct: 114 ATPLLPQEVQQQGIRVQKSSSSFLMVAGFINDSGTMTQNDISDYVGSNIKDPISRVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   +       N        G            
Sbjct: 174 DTQLFGAQ-YAMRIWMDPHKLNNYQLTPVDVISAINTQNAQVAAGQLGGSPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        R       +I           
Sbjct: 233 SIIAQTRLTSTE-------------EFGKILLKVNADGSRVRLSDVAHIELGGENYEVIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          L          +           S + 
Sbjct: 280 RYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFFPSGLKVVYPYDTTPFVKISINE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A++S  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMDQIQGALVGIALVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++++S+  A+ +  A+   +                   +   
Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVIVALILTPALCATMLKPVNKGDHGKTTGFFGWFNRLF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + V   ++    +   L         + +G          
Sbjct: 520 DKSTHHYTDSVGHIVRSTGRYLVIYLLIVVGMAFLFLRLPTAFLPEEDQGVFLTMAQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +    ++ +  +    F V      G           +K        
Sbjct: 580 GATQERTQKVLDQVTDYYLNKEKANVNSVFTVNGFGFAGRGQNTGLAFVSLKPWDERSGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671
            + +             +    ++
Sbjct: 640 ANKVPAITGRAMGALSAIKDAMVI 663



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       +  ++  +      + L        +++     ++    K+    
Sbjct: 258 SRVRLSDVAHIELGGENYEVIARYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 436 DQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALILTPAL 492



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 7/193 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G   A     E +         L T    +  G      L       +  IS I + + +
Sbjct: 828  GQPAAGKSSGEAMDLMQELASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L F  L G+  ++  V  +LT IG S  + +++ + 
Sbjct: 888  AALYESWSIPFAVMLVVPLGVIGALIFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEF 947

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  M+         +   +++   L   + TS+A  + VLP+A+    G     +    
Sbjct: 948  AKDLMEKEGKG--LVEATLEAVRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTG 1005

Query: 801  MAFGIVVAASSSI 813
            +  G+V A   +I
Sbjct: 1006 VMGGMVTATVLAI 1018


>gi|326317837|ref|YP_004235509.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374673|gb|ADX46942.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1069

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 151/552 (27%), Gaps = 33/552 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +           L+++P   P                      
Sbjct: 8   RPIFAWVIAIVIMLAGAMSI-----RNLPLEQYPDIAPPRV---------SISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L        +      ++ TL+F      +    +V   LQ 
Sbjct: 54  AKTVEESVTQVIEQQLKGLDNLIYMGSTSDASGNSRTTLTFNAGTNIDVAQVQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   +  T      +++            ++    I    +D I   +   
Sbjct: 114 AMSRLPPAVQSRGVTVTKGGNDYLMIVTFTSPDPSVTQVDIGDYISSNLVDVISRIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +       N        G            
Sbjct: 174 DVATLGTG-YAMRVWMDPARLEKYALMPSDVGNALNAQNAQVSAGQLGALPAVGQQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 I      +    
Sbjct: 233 TITARSKL-------------QSREEFENIVLKVATDGSIVRLKDVARIELGADNLTITS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     E      A LR                     S   
Sbjct: 280 RLNGQPGAGMGVVLADGANAMAVAEAVNAKVAELRPFFPYQLKPFTSYDTTPFVEASIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV++V+++ +   +  L+   ++ + ++ T  +LS  G ++   ++ G+V
Sbjct: 340 VIKALVEAMALVVLVMYLFLQNFRATLIPAIAVPVVLLGTFGVLSAAGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +     +     +    +T     + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMAEITPALVGIALTLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++++S+  A+++  A+   +++     +   +  +        
Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVLVALTLTPALCATLLKPIPKGAHSPHGGAPRRGPLGW 519

Query: 538 IAIQFMRARFWG 549
           +   F       
Sbjct: 520 VDRFFTGFNHRF 531



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V           I+ +        +  +     +++A    +     ++    
Sbjct: 258 SIVRLKDVARIELGADNLTITSRLNGQPGAGMGVVLADGANAMAVAEAVNAKVAELRPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T           I + I  ++ +   +++ +++  + +   L     + + + 
Sbjct: 318 PYQLKPFTSYDTTPFVEASIEEVIKALVEAMALVVLVMYLFLQNFRATLIPAIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFGVLSAAGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     V  ++      +PMA +GGS       F+I +   +V++   ++ +   +   
Sbjct: 436 AEITPALVGIALTLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVLVALTLTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                    G   +     + V  S   S   +     +   N      F+         
Sbjct: 783 PFRMLPQDIGPWTVRNNQGQMVPFSAFSSTYWTYGSPQLQRYNGSPSYEFVGDAAPGVSS 842

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A   + E++K+    I    T  + +         L+    + ++   + +     + 
Sbjct: 843 GAAMGAIDEIMKQMPPGIGYEWTGASYQERLSGSQAPLLYA--ISILFVFLCLA---ALY 897

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W      I  + L I   L    + G+  ++     +LT +G +  + +++ +     
Sbjct: 898 ESWSVPFSVILVVPLGIVGALLGIGIRGMSNDVYFQVGLLTTVGLASKNAILIVEFA--- 954

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +L     S  D   +++   L   + TS+A    VLP+
Sbjct: 955 TQLQAAGRSVIDATLEAVRLRLRPILMTSLAFGFGVLPL 993


>gi|269966432|ref|ZP_06180517.1| protein export protein SecD [Vibrio alginolyticus 40B]
 gi|269829019|gb|EEZ83268.1| protein export protein SecD [Vibrio alginolyticus 40B]
          Length = 599

 Score =  194 bits (492), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 156/513 (30%), Positives = 272/513 (53%), Gaps = 27/513 (5%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            F   S+   + + M  + I LGLDLRGG   +L VD +           DE+++ L+ +
Sbjct: 100 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALIDEIKANLRDQ 159

Query: 85  GIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
            +    +R +  N+IT+    +   E    +V  FL+              +  ++ +  
Sbjct: 160 RVRGVQVRAESGNRITV----NSDSEQALSEVNKFLRQ--------NYPGWISKSSSRGF 207

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  S+ NI +  S  ++Q+++I+R RI+++GI+E+ +QR G   I I+LPG QDP++ +
Sbjct: 208 VLEPSEQNIQEFQSSTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 267

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++V    + +        L+D+DG   ++  +  ++G H+  A A  D 
Sbjct: 268 NVIGATASLAFYEVKD--ASQAHSSQDLVLQDNDGRTVILAKRPVLTGEHIVNARAGVDK 325

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+       V      + +    Q+ 
Sbjct: 326 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERVISVATIQSQ 385

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  G+
Sbjct: 386 LGSQFRITGAGSMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGM 445

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 446 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 505

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +++ ERI+++ R+ +S   ++D+GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 506 VIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALT 565

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMFT +   RAM+  I      + + 
Sbjct: 566 LGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 598



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 397 SMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 456

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L  ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 457 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 515

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SF   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 516 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 572

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+   A+ 
Sbjct: 573 SMFTGVFASRAMINLIWGRDARR 595


>gi|312960631|ref|ZP_07775137.1| hydrophobic/amphiphilic exporter-1 [Pseudomonas fluorescens WH6]
 gi|311285157|gb|EFQ63732.1| hydrophobic/amphiphilic exporter-1 [Pseudomonas fluorescens WH6]
          Length = 1032

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 83/687 (12%), Positives = 187/687 (27%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL       PQ  + ++P+  P               + +    
Sbjct: 8   RPIFAWVVALFILLAGLLAI-----PQLPVAQYPNVAPPK-------------VEIYAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  L +     +   L                   IT +F      E     V   
Sbjct: 50  PGASAQTLDESVVSLIEQELNGADHLLYFESQSSLGSATITATFQPGTNPEMAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V  +L     +  L         ++L     +      +  S  + R  ++++   +
Sbjct: 110 LKAVEPRLPQAVTQQGLQVEKVSAGFLLLVTLTSNDGKLDDVALSDYLARNVMNELKRLD 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +L     T A ++      N        G      +  
Sbjct: 170 GVGKAQLYGA-ERAMRIWIDPQKLIGFNLTPADVNAAISAQNAQVSAGSIGDLPGTATQE 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +  K ++S                +    +                 +        
Sbjct: 229 ITAAILVKGQLS-------------TPAEFADIVLKANPDGSTVRIGDVARVEIGSQEYQ 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L                +   T          L           +          S
Sbjct: 276 FSTRLNGKPSTAVSVQLAPGANALNTATLVRAKMDELSRYFPANVEYKIPYDTSPFVKVS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +    T      LV  V+F+ +   ++ L+    + + ++ T A L LLG ++ + ++ 
Sbjct: 336 ITKVVYTLLEAMALVFAVMFLFLQNVRYTLIPTLVVPIALMGTFATLLLLGFSINVLTMF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   + +
Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMVTEGLSPKEATRKAMGQITGAIVGITLVLVAVFLPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFF 532
            F  G      + F+++M  SIL S F A+++  A+   +++                F 
Sbjct: 456 AFMPGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPIAQGEHHAKGGFFGWFN 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL- 591
              + +  ++     + +  S  + +  + LL   G  +       + +        D+ 
Sbjct: 516 KRFEQLTDRYEGWVAYALKRSGRYLLIYLVLLVGLGWMFTRLPSSFLPVEDQGYTITDIQ 575

Query: 592 ----SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     ++  +  +       G  +  + + +    S     +     K  +E   
Sbjct: 576 LPPGASKNRTVQVAEQIEAHNAGEPGVGDTTMIMGFSFSGSGQNAALAFTTLKDWSERSS 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             +  +          EL       V+
Sbjct: 636 DDSATSIADRANMAFSELKDAIAYAVL 662



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 87/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q    S +        +        +++    ++     +++   
Sbjct: 257 STVRIGDVARVEIGSQEYQFSTRLNGKPSTAVSVQLAPGANALNTATLVRAKMDELSRYF 316

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P +             +  I K +  ++ +   +   +++  +   + L     + + + 
Sbjct: 317 PANVEYKIPYDTSPFVKVSITKVVYTLLEAMALVFAVMFLFLQNVRYTLIPTLVVPIALM 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N+  +  ++  IG  V+D +VV + +     + T  +S ++   K++
Sbjct: 377 GTFATLLLLGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMVTEGLSPKEATRKAM 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      LPMA   GSV      F++ MA  I+ +A  ++ +   +   
Sbjct: 435 GQITGAIVGITLVLVAVFLPMAFMPGSVGVIYQQFSLSMATSILFSAFLALTLTPALCAT 494

Query: 823 IYD 825
           +  
Sbjct: 495 LLK 497



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 76/231 (32%), Gaps = 11/231 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A   V LS       +     ++  N                   A   +  +V +   
Sbjct: 788  KAGNMVPLSAFVEAKWTQGPAQLTRYNGYPAIAISGEAAPGHSTGEAMNEIQRLVSQLPA 847

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
             +    T  + +         L+    + ++   +A      +   W      +  + L 
Sbjct: 848  GLGQEWTGLSLQERLSGAQAPLLLGLSLLIVFLCLA-----ALYESWSIPTSVLLVVPLG 902

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +   +   +L G+  ++     ++T+IG S  + +++ +  +    LY           K
Sbjct: 903  VLGAVVAVSLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKD---LYDQGEDLISATLK 959

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASS 811
            +    L   + TS+A  + V+P+A+  G+   S       +  G++ A  +
Sbjct: 960  AARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLA 1010


>gi|194335298|ref|YP_002017092.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194307775|gb|ACF42475.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 1053

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 74/689 (10%), Positives = 188/689 (27%), Gaps = 47/689 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++           ++++P       I+                 
Sbjct: 8   RPVFAWVISICIMLGGIIAI-----NTLPVEQYPRIAAPT-IN--------VSATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +              N  IT++F      +    +V   LQ 
Sbjct: 54  AEAVENSVTQVIEQALTGIDHLRYFSAGSDSNGNVTITVTFEPEANPDIAQVQVQNKLQS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    ++  +  T      +++     D         +  I  + +D +       
Sbjct: 114 IMSNLPQQVQQQGIKVTKGDTGFLMVVGVYSDDPRIDEYAMNDFINSKLLDPLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP R+     TT ++       N        G            
Sbjct: 174 NIQVFG-QPYSMRIWLDPHRMASFNLTTTEVQAAITAQNADVSAGQLGGTPSVPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      +        +        +   +       
Sbjct: 233 TITAQSRL-------------KSVGDFEKIMLKVNSDGSQIRLRDVARVELGVQNYDMTT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T        + L+    P    +           S   
Sbjct: 280 RFNGKPAAGMAITLATGANALNTATLVKAKMSALKPLLPPGVQIVYPFDTTPFVKTSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV +V+F+ +   +  LV   ++ + ++ T  ++S+ G ++   S+  +V
Sbjct: 340 VVHTLIVAVILVFLVMFLFLQNFRATLVPTIAVPVVLLGTFGVMSMFGFSINTLSMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +      +  S   +      +  S  I  + + + +   + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEEERLSPLEATRKSMKQISSALIGIALVLSAVFVPMAFF 459

Query: 480 FG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------------KKMKSI 523
            G  G   R F+IT+  ++L+S+  A+ +  A+   +++               +     
Sbjct: 460 KGSTGTIYRQFSITIVSAMLLSVLVALILTPALCASLLKPVRADGHLYGAGPLGRFFAWF 519

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           +   +   R +   +   ++  +  I L          + +G + + +
Sbjct: 520 NGMFNHNRERYVNGARVMTERVKRSLLAFMLIVVLLGIVLTRIPTSFLPDEDQGFLFVQL 579

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                        +++ ++   ++ +    E  F V      G           ++    
Sbjct: 580 STPSGATKERTLESVKRMERYLLNQEKESIESIFSVTGFSFAGQGQNSAMGFVQLRDWSK 639

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                  + +           +    I  
Sbjct: 640 RKNKGQDVASIAGRTMGALSSVKDAMIFA 668



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 91/234 (38%), Gaps = 12/234 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V      +Q  D++ +        +        +++    +++     +  ++P     
Sbjct: 264 DVARVELGVQNYDMTTRFNGKPAAGMAITLATGANALNTATLVKAKMSALKPLLPPGVQI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I   +  +I++ I + + +++  + +   L     + + +  T G  
Sbjct: 324 VYPFDTTPFVKTSIEGVVHTLIVAVILVFLVMFLFLQNFRATLVPTIAVPVVLLGTFGVM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINET 768
           ++FG   N  ++ A++  IG  V+D +VV    +R+ +  +L     S  +   KS+ + 
Sbjct: 384 SMFGFSINTLSMFAMVLAIGLLVDDAIVVVENVERIMEEERL-----SPLEATRKSMKQI 438

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
               +  ++      +PMA + GS       F+I +   ++++   ++ +   +
Sbjct: 439 SSALIGIALVLSAVFVPMAFFKGSTGTIYRQFSITIVSAMLLSVLVALILTPAL 492



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 91/271 (33%), Gaps = 9/271 (3%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                   Y ++        V  +    +     +      G    + F+G  +  ++   
Sbjct: 774  FMQGDAPYRMNPGDVNIWHVRNSSGDMVPFSSFSSGRWSFGSPKLERFNGISSVNIQGAP 833

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
             PG S      +     +                     ++ +    + ++   + +   
Sbjct: 834  APGVSSGDAMAIMANLAEKLPEGFGVEWTGLSYEERAAGQQTLLLYTLSLLFVFLCLA-- 891

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +   W   +  +  + L +  T+    L G+  ++     +LT +G +  + +++ + 
Sbjct: 892  -ALYESWSVPIAVMLVVPLGVLGTVLATFLSGLSNDVFFKVGLLTTVGLTAKNAILIVEF 950

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +    LY + +S ++ +  + ++ L   + TSMA  + V P+A     G +   +  I 
Sbjct: 951  AK---TLYESGMSLQEAVLSAASQRLRPIIMTSMAFILGVTPLAFSSGAGSASQHAIGIG 1007

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  G++     +IF      + +    A+  
Sbjct: 1008 VIGGMLSGTVLTIFFVPLFFILVQSRFARKR 1038


>gi|317491101|ref|ZP_07949537.1| hydrophobe/amphiphile efflux-1 family RND transporter
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920648|gb|EFV41971.1| hydrophobe/amphiphile efflux-1 family RND transporter
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1040

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 75/682 (10%), Positives = 178/682 (26%), Gaps = 50/682 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVLAIILMLAGGLAIL-----RLPVAQYPTIAPPA-------------IAITATY 49

Query: 63  DDFVNGFLQMYSDEL-RSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q    ++    +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAQTVQDTVTQIVEQNMNGIDNLMYMSSTSDSAGGVTITLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    D       + S  +     D I  S
Sbjct: 110 KLQLAMPLLPQEVQQQGISVEKSSSSFLLVAGFISDNKNLTQDDISDYVASNIKDPISRS 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +  +L +   T   +     + N+       G      + 
Sbjct: 170 NGVGDVQLFGAQ-YAMRIWLNSDQLNKYQLTPIDVINQLKIQNDQIAAGQLGGTPSVHNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        I       
Sbjct: 229 QLNASIIAQTRL-------------KDPEQFGQVLLKVNQDGSQVRLKDVARIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +   T        A L+         +           
Sbjct: 276 NIVAKINGQPAAGLGIKLATGANALDTAAAIKAKLAELQPYFPQGMRVVYPYDTTPFVQI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIHEVIKTLLEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +     +   S   +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEHLSPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+         +K +          
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPVSAEGHGEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   F ++              +   L  +     +   G   L +          
Sbjct: 511 FFGWFNRTFEKSAHHYTDSVGGILRSTGRYLIIYV----LIVIGMGVLFLRLPTSFLPEE 566

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            +    ++            ++      QY      A    +  V          ++   
Sbjct: 567 DQGVFMTMVQLPAGATQLRTQQVLDQVTQYYLTKEHANVESVFTVNGFSFSGQGQNSGLA 626

Query: 654 TEIVGPKISRELIRKGIVGVII 675
              + P   R     G+  ++ 
Sbjct: 627 FISLKPWDQRSGKENGVTAIVG 648



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 92/273 (33%), Gaps = 6/273 (2%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+     +  ++    L     F   +         V L  V       +  +I  + 
Sbjct: 222 TPSVHNQQLNASIIAQTRLKDPEQFGQVLLKVNQDGSQVRLKDVARIELGGENYNIVAKI 281

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                  L        +++     ++    ++    P               +  I + I
Sbjct: 282 NGQPAAGLGIKLATGANALDTAAAIKAKLAELQPYFPQGMRVVYPYDTTPFVQISIHEVI 341

Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             ++ + I + + +++  +     L     + + +  T    + FG   N   +  ++  
Sbjct: 342 KTLLEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLSAFGYSINTLTMFGMVLA 401

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + +     +    +S ++   KS+ +  G  V  +M      +PMA +
Sbjct: 402 IGLLVDDAIVVVENV--ERVMAEEHLSPKEATKKSMEQIQGALVGIAMVLSAVFIPMAFF 459

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           GGS       F+I +   + ++   ++ +   +
Sbjct: 460 GGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 69/193 (35%), Gaps = 7/193 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G+        + ++     +  L      +  G      L       +  IS + + + +
Sbjct: 828  GEPTLGKSTGDAMQMMEQLVAKLPAGIGYDWTGMSYQERLSGNQAPALYAISLVVVFLCL 887

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L   A+ G+  ++     +LT IG S  + +++ + 
Sbjct: 888  AALYESWSIPFSVMLVVPLGVVGALLAAAIRGMNNDVYFQVGLLTTIGLSAKNAILIVEF 947

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  M+         D    ++   L   + TS+A  + VLP+ +    G     +    
Sbjct: 948  AKDLMEKEGKG--LIDATLDAVRMRLRPILMTSLAFILGVLPLVISSGAGSGAQNAVGTG 1005

Query: 801  MAFGIVVAASSSI 813
            +  G++ A   +I
Sbjct: 1006 VMGGMLTATLLAI 1018


>gi|83747153|ref|ZP_00944196.1| Acriflavin resistance protein (acrB) [Ralstonia solanacearum UW551]
 gi|83726128|gb|EAP73263.1| Acriflavin resistance protein (acrB) [Ralstonia solanacearum UW551]
          Length = 1049

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 182/686 (26%), Gaps = 49/686 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G +        Q  + ++P+  P               +++    
Sbjct: 8   RPVFAWVLALFIIVAGAISI-----TQLPIAQYPTIAPP-------------SILITATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN--KITLSFADSRFKENIADKVT 116
                  L       +   +             +       IT++F            V 
Sbjct: 50  PGASAKTLDDAVTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V ++L     +  +     +   ++ +           +     I R  +++I  
Sbjct: 110 NRLKRVEARLPSSVTQQGVQVDKTRSNFLLFATLISKDGKMDPVALGDYISRNVLNEIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q +        +    DP++L     T   +       N        G       
Sbjct: 170 VPGVGQAVLFGT-ERAMRIWVDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +   V + G             T +    +   +    +        +      
Sbjct: 229 QP----IAATVVVEGQ---------MTTTEQFGNIVLVSKPDGSQVRVKDVARLELGGQT 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +    I+          +   T +        L           +         
Sbjct: 276 YATSARINGQPISAIGVQLSPTGNALGTAKAVKAKLDELSKYFPAGVEYKIPYDTSKFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   ++ L+    + ++++   A ++ LG ++ + +
Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLVFLQNIRYTLIPSIVVPISLLGAFATMNALGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +     +       +      +    I    +  +   +
Sbjct: 396 MFGLVLAIGILVDDAIVVVENVERIMSQEGLPPREATRKAMGQITGAIIGITLVLMAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDI 525
            + FF G      R F+++M  SI  S   A+++  A+   +         ++K      
Sbjct: 456 PMAFFSGSVGAIYRQFSLSMVASIFFSALMALTLTPALCSTLLKPIEKGSHHEKKGFFGW 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        ++     +     + I   +    ++    L             +  
Sbjct: 516 FNRMFTSTTNHYQSLVERVLKKTFRYMVIYGVLIGAVVVLFMRLPSSFLPNEDQGYIITN 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +    +     L+ ++  +  +Q+    +N +    +    +     ++    K  ++ 
Sbjct: 576 IQLPPAASANRTLDVIKQVERYYQHEKAVENIVAVQGFSFSGNGPNAALVFTTLKDWSQR 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIV 671
               T               IR  IV
Sbjct: 636 GADQTADAVAGRAFGALFGGIRDAIV 661



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 87/250 (34%), Gaps = 6/250 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            F   + +       V +  V       Q    S +      + +       G+++   +
Sbjct: 246 QFGNIVLVSKPDGSQVRVKDVARLELGGQTYATSARINGQPISAIGVQLSPTGNALGTAK 305

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
            ++    ++++  P            K  +  I + +  +  +   + + + +  +   +
Sbjct: 306 AVKAKLDELSKYFPAGVEYKIPYDTSKFVQISIEEVVKTLFEAMALVFLVMLVFLQNIRY 365

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +          G   N+  +  ++  IG  V+D +VV + +     +  
Sbjct: 366 TLIPSIVVPISLLGAFATMNALGFSINVLTMFGLVLAIGILVDDAIVVVENV--ERIMSQ 423

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +  R+   K++ +  G  +  ++      +PMA + GSV      F++ M   I  +A
Sbjct: 424 EGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVASIFFSA 483

Query: 810 SSSIFIAAPI 819
             ++ +   +
Sbjct: 484 LMALTLTPAL 493



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/258 (10%), Positives = 81/258 (31%), Gaps = 9/258 (3%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    + +         V  S            Q      
Sbjct: 759  FPNYGRQQRVIVQADRINRMQPEDIMNLFVRNTQGSMVPMSAFAKGHWIVGPVQLVRYNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +R+        +    ++ +++  +++      + T     + S       +  +  
Sbjct: 819  YPSIRISGDAATGASTGEAMDEMERLASKLPAGIGFEWTGQSLQEKSSGSQAPALYAL-- 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            S +A+ + +   ++ W      I  + L +   L    L  +  ++     ++ ++G S 
Sbjct: 877  SLLAVFLVLAALYESWSIPAAVILVVPLGVLGALLGVTLRVMPDDVYFKVGLIAVVGLSA 936

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
             + +++ +  +    L        +   ++++      + TS A  + VLP+A+  G+  
Sbjct: 937  KNAILIIEFAKD---LQAQGKGLIEATLEAVHLRFRPIIMTSFAFILGVLPLAIATGASS 993

Query: 795  ---GSFAIPMAFGIVVAA 809
                +    +  G++ A 
Sbjct: 994  ASQRAIGTGVMGGMIAAT 1011


>gi|153001801|ref|YP_001367482.1| preprotein translocase subunit SecD [Shewanella baltica OS185]
 gi|151366419|gb|ABS09419.1| protein-export membrane protein SecD [Shewanella baltica OS185]
          Length = 604

 Score =  194 bits (492), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 165/527 (31%), Positives = 275/527 (52%), Gaps = 34/527 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  ++  P  L  S     PS +       I LGLDLRGG   +L+VD D       +
Sbjct: 94  TLVSSMVTEPKELTLSFASAAPSWLQNLGFQPIKLGLDLRGGVQFLLDVDVDPVYQTQGE 153

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
              D LR F++++ I   S+   Q N++ L+  D+  +  +   +               
Sbjct: 154 ALVDSLRQFIREQKIRGASVYLDQTNQLNLTLPDNDARAAVRQMMKQSYPNWQ------- 206

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
               L  T    + I LSQ    ++ +  ++Q+++++R RI+++GI+E+ +QR G HRI 
Sbjct: 207 ----LSNTDGAGLQIKLSQEEQTKLRNLTVQQNLQVMRSRIEELGITEALVQRQGDHRIR 262

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           I+LPG QDP+  + ++G TA ++F +V               L D  G    V     + 
Sbjct: 263 IELPGVQDPAAAKNVIGATASLAFFEVKE-----SGSVNAMVLNDKSGKPIYVSRTPVLG 317

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR--------- 301
           G H+  A A+         V+I+ D +G ++  E +R NIGKP+A               
Sbjct: 318 GDHIVDARASLGEMGM-AEVNINLDRIGGQKMSEFSRTNIGKPMATSYSEYSRDELGKAK 376

Query: 302 ---VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               + +    Q+    + +I+G  T + A  LA +LRAGS+   + IVEER +G  LG+
Sbjct: 377 QTQEIISVATIQSQLGDRFRITGAGTYQEAQQLALLLRAGSMTAPVTIVEERTIGPTLGA 436

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
           ++I  G  A+  G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A LTLP I
Sbjct: 437 ENIENGFAALGLGMGITLLFMALWYRRLGWVANIALISNMVILFGLLALIPGAVLTLPGI 496

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG+VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STIFD+N T +I  VVL
Sbjct: 497 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSFALAIDTGFDSAFSTIFDANFTTMITAVVL 556

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +  G G ++GFA+T+GL +L SMFT I   RA++  +      + + 
Sbjct: 557 YSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDASRHVR 603



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 90/260 (34%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    +            +    ++ L       G    Q
Sbjct: 345 GQKMSEFSRTNIGKPMATSYSEYSRDELGKAKQTQEIISVATIQSQLGDRFRITGAGTYQ 404

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I  G   + +     L+++ + ++  
Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPTLGAENIENGFAALGLGMGITLLFMALWYR-R 463

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 464 LGWVANIALISNMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID   +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 524 ---GRSFALAIDTGFDSAFSTIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMF 580

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  ++  +Y   A  
Sbjct: 581 TGIFASRALINLVYGRDASR 600


>gi|17973460|gb|AAL32126.1| inner membrane RND family protein AcrB [Proteus mirabilis]
          Length = 1052

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 71/692 (10%), Positives = 183/692 (26%), Gaps = 43/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     +  + ++P+  P                V    +
Sbjct: 8   RPIFAWVIAIITMLAGLLALI-----KLPVAQYPTIAPPAI---------SISAVYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        ITL+F      +    +V   LQ 
Sbjct: 54  ATTVQNTVTQVIEQNMNGIDNMVYMSSTSDSAGMMNITLTFEAGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++            + +  +     D +       
Sbjct: 114 AMPLLPQEVQQQGISVDKSSSSFLMVAGFISGDGSMSQDDIADYVGATIKDPLSRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L +   TT  +       NN       G            
Sbjct: 174 ETQLFGTQ-YAMRIWLDPDKLVKYNMTTLDVINAIKSQNNQVAAGQLGGTPPVPGQRLNV 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +        +        +           
Sbjct: 233 SIIAQTRL-------------NTPEQFADILMKVNQDGSQVKLKDLGIVEMGAENYSTIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T        A +          +           S   
Sbjct: 280 RFNGLPAAGIGIKLATGANALDTATAVRAALADMEPFFPSGLEVVYPYDTTPFVKISIFE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++  +V
Sbjct: 340 VVKTLVEAIMLVFVVIYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F++T+  ++++S+F A+ +  A+   +          ++       +   
Sbjct: 460 GGSTGAIYRQFSVTIVSAMVLSVFVALILTPALCATLLKPIPKGSHGVQTGFFGWFNRVF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D ++        + +   +L +  +I  +         + +G +   V    
Sbjct: 520 EKSSHHYTDSVSRTLRGTGRYLLIYVLLVAAMAIMFVRLPASFLPEEDQGVLLTVVQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L  +     + +    +  F V      G          ++         
Sbjct: 580 GSTQEQTQDVLTQVNDYFNTKEKDVVKSVFTVSGFGFGGQGQNMGLAFVVLNDWDERKSD 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
              +        +   ++    +    I AI 
Sbjct: 640 QDKVPAIVGRANQALSQIKEAFVYSFNIPAIV 671



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 79/211 (37%), Gaps = 7/211 (3%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++L          T V   +            +       P +   +    +  ++ + +
Sbjct: 291 IKLATGANALDTATAVRAALADMEPFFPSGLEVVYPYDTTPFVKISIFE-VVKTLVEAIM 349

Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + + I++  + +   L     + + +  T    + FG   N   + A++  IG  V+D 
Sbjct: 350 LVFVVIYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFAMVLAIGLLVDDA 409

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +     +    +S ++   KS+ +  G  V  ++      +PMA +GGS     
Sbjct: 410 IVVVENV--ERVMQEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFFGGSTGAIY 467

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F++ +   +V++   ++ +   +   +  
Sbjct: 468 RQFSVTIVSAMVLSVFVALILTPALCATLLK 498



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 82/244 (33%), Gaps = 8/244 (3%)

Query: 591  LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             S + ++ +    G    + ++G     ++    PG S     ++               
Sbjct: 801  SSFIDTSKDPWLYGSPRLERYNGLPAVQIQGSATPGQSSGDAMLMMEQLASKLPSGIGYE 860

Query: 651  IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                         +      + +I+  + +     +   W      +  + L +   L F
Sbjct: 861  WTGMSYQERLSGNQAPALYTISLIVVFLCLA---ALYESWSVPFSVMLVVPLGVIGALAF 917

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+E ++     +LT IG S  + +++ +  +  M+         +    S+   L 
Sbjct: 918  TTLRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LVEATLDSVRMRLR 975

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + TS+A  + V+P+ +    G     S    +  G++ A S +I+      + I    
Sbjct: 976  PILMTSLAFMLGVIPLVLSNGAGSGAQNSVGTGVFGGMIAATSLAIYFVPIFFVVIRRRF 1035

Query: 828  AKNA 831
            AK  
Sbjct: 1036 AKKN 1039


>gi|134296813|ref|YP_001120548.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           vietnamiensis G4]
 gi|134139970|gb|ABO55713.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia vietnamiensis G4]
          Length = 1066

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 71/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----SLPIAQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +       + +  +     D I   
Sbjct: 110 KLSLATPVLPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMSKYDLANFVASHVKDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+RL     T   +S      N    G   G    +   
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPNRLTNYGLTPVDVSSAITAQNVQIAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++SL+G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSLVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNNSRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++    
Sbjct: 258 SQVRLKDVAQIGLGGENYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +L G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMSLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 80/219 (36%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K   +    +         +   +    
Sbjct: 816  ERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGSQAPVL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 61/521 (11%), Positives = 134/521 (25%), Gaps = 36/521 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLKDEKDIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSQRQHANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +        ++         +  +     ++  +A      ++  R   +G++    
Sbjct: 650  MFGRYGSYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKDP 709

Query: 182  QRLGSH----RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               G          Q   + D  +   L  T   +     +                   
Sbjct: 710  TLQGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW----------------- 752

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 V + ++  G           P    P     +                       
Sbjct: 753  -ASKYVNNFLDTDGRIKKVYVQADAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTYG 811

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     V    I    A         TA    A      +      +  + + +   
Sbjct: 812  SPKLERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGS- 870

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                     AI   +V + L  +             + L VI  L   +L G    +   
Sbjct: 871  ---QAPVLYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQ 927

Query: 418  AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  + 
Sbjct: 928  VGLLTTVGLSAKNAILIVEFARELQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVMP 987

Query: 477  LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            L      G  +       +   ++ + F AI ++    + I
Sbjct: 988  LAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028


>gi|134292295|ref|YP_001116031.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           vietnamiensis G4]
 gi|134135452|gb|ABO56566.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia vietnamiensis G4]
          Length = 1066

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 67/548 (12%), Positives = 154/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   +   +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 IG   +      
Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDIARIGLDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRALGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+      G  +  +  + + FG+
Sbjct: 960  -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 90/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 252 IVVKTTPDGGVTHLRDIARIGLDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+    + +
Sbjct: 371 PLIAVPVSIVGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ESGM 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           + R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 428 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 487 SLTLSPALSAILLK 500


>gi|256018820|ref|ZP_05432685.1| acriflavine resistance protein [Shigella sp. D9]
 gi|332279901|ref|ZP_08392314.1| multidrug efflux system protein [Shigella sp. D9]
 gi|332102253|gb|EGJ05599.1| multidrug efflux system protein [Shigella sp. D9]
          Length = 1034

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 178/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNIKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +                    +                      +      
Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILNPALCATLLKPTSAEHHENKGGFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERNSDEN 641



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V ++  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 291

Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T + ++    ++    P               +  I + +  +  + + +
Sbjct: 292 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +  ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 470 FSITIVSAMALSVLVALILNPALCATLLK 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|91203068|emb|CAJ72707.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis]
          Length = 1158

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 75/272 (27%), Positives = 131/272 (48%), Gaps = 11/272 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                    L+   ++      G     +  ++P+    +   L+S     +  +N   +K
Sbjct: 866  IINKFKDNLYEEKIDVAFQEIGDYLFNMTLSKPLRKETIEKTLDSAGYTGLLTENLAMDK 925

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
             +             Q  V    +      +  + ++    +G  ++ E+  + I+GV  
Sbjct: 926  EYQTVA----LSFNEQQNVGAAKEAIQKAFIVPNPLKRVVSIGSTVADEMKSRAILGVFF 981

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFA----LFG-IEFNLTAVAAVLTL 729
            +  A + Y+W RF  + F   AI  +I DI  TLG  A    LFG ++F+ + VAA L +
Sbjct: 982  ACAATIFYVWFRFGDFRFGSAAIIAVIHDILITLGVVAVADYLFGNMKFDSSMVAAFLAV 1041

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +GYS+ND ++V+DR+R+NM+     ++   LI++SI++TL R++ TS      +  +   
Sbjct: 1042 VGYSLNDTIIVFDRIRENMEGRGKILN-AQLINESISQTLSRTILTSATTIGVLFSLFFL 1100

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            GG+ I  FA  M  GI+V   SSIFIA+P+LL
Sbjct: 1101 GGAEIHGFAFVMLTGIIVGTYSSIFIASPLLL 1132



 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 181/679 (26%), Positives = 294/679 (43%), Gaps = 82/679 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  W + L  ++  IG +I  P        +                      +V E D
Sbjct: 3   KNLRWKIPLIVIVIAIGFMILYPPAEKVLKRE----------------------MVKEAD 40

Query: 62  EDDFVNGFLQMYSD-------ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114
                +  ++            +R  +  E I                      + I  K
Sbjct: 41  GKVIESKIVEKAWTHFLVTNPIIRETIIGEEI------------------GTDGKKITTK 82

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
              +      KL +D               +   + +  +      ++ +E++++RID  
Sbjct: 83  TVEYFTKGKIKLGLDL--------KGGSELLYTVRVDEREDRPGITKEIIEVLKKRIDPQ 134

Query: 175 GISESTIQRLGSHRILIQLPGEQ--DPSRLRQLLGTTAKMSFHKVLPNNSKK-------- 224
           G+ E  IQ  G  RILIQ+PG    +   L+  +    K+ F      +S +        
Sbjct: 135 GVMEYRIQEQGHRRILIQVPGATRSETESLKNRITKLGKLEFRLAASTDSVEYKDAMEGK 194

Query: 225 -------GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                   ++   +     +G  +LV +  EI+G HL+   A+   K  +PVV   FD  
Sbjct: 195 SVPGYYKHWLRKRKGEEGEEGKWFLVRNTTEITGEHLSRIYADT--KGIEPVVGFEFDAA 252

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
           G  +F ++T  NIGKPLA++LDG + +AP I      GK  I G+FT      L A +RA
Sbjct: 253 GKSKFGQITERNIGKPLAIILDGILYSAPTIRD-RIPGKGIIEGSFTQNEVNELIATMRA 311

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           GSLP  L +  E  VG  LG DSI KG  A + G + +VLF+ + Y   G VA+F+  LN
Sbjct: 312 GSLPADLELEMETMVGPSLGRDSINKGLTAGIIGGIFVVLFIGIYYLGIGWVANFANALN 371

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           V L + +++LL ATLTLP IAG+VL IG+ VD+N+L+ ERIREE  K + +  ++  G+ 
Sbjct: 372 VFLIIGIMALLNATLTLPGIAGLVLMIGMGVDANVLIYERIREERAKGKPIRAAVKAGYQ 431

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           +A+S IFDSNIT +I  V+L   G G V+GFA  + + ++I++FTAI + R +   ++  
Sbjct: 432 KAFSAIFDSNITTVITGVILASVGTGPVKGFAWILIIGLIINLFTAIFVTRTIYELLMDL 491

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFK 576
           K +KS  +        +     I+F+  R     +S +         +      Y IDF 
Sbjct: 492 KWVKSFSM------LRLIGVPDIRFLSIRHTLFIVSGVCVLGGMTFFVIRGDKKYDIDFT 545

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           GG  + +          +R++L+    G+   Q+    +N    +       +    + E
Sbjct: 546 GGTLVHLHLKNETTPGFIRTSLKDAGYGEAEVQSIWSGENLTQFVSKADEFGIRIKEINE 605

Query: 637 MVKKKITEIVPLSTIQNTE 655
             +K+       +    TE
Sbjct: 606 EKEKQKIATDISNVFGQTE 624



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 78/176 (44%), Gaps = 4/176 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +   +VGP + R+ I KG+   II  I ++++I I +       A     L++   +G  
Sbjct: 321 EMETMVGPSLGRDSINKGLTAGIIGGIFVVLFIGIYY-LGIGWVANFANALNVFLIIGIM 379

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           AL      L  +A ++ +IG  V+  V++Y+R+R+           R  +     +    
Sbjct: 380 ALLNATLTLPGIAGLVLMIGMGVDANVLIYERIREERA---KGKPIRAAVKAGYQKAFSA 436

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              +++   I+ + +A  G   +  FA  +  G+++   ++IF+   I   + D +
Sbjct: 437 IFDSNITTVITGVILASVGTGPVKGFAWILIIGLIINLFTAIFVTRTIYELLMDLK 492


>gi|310778924|ref|YP_003967257.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ilyobacter polytropus DSM 2926]
 gi|309748247|gb|ADO82909.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ilyobacter polytropus DSM 2926]
          Length = 1052

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 78/680 (11%), Positives = 189/680 (27%), Gaps = 45/680 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I   GL+      +    + ++P   P               + +   
Sbjct: 8   KRPIFAGVISIVIVIAGLVT-----MKSLPVAQYPEIAPPT-------------IQVSAV 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       +   +   E +   S     +    ++++F      +   + V 
Sbjct: 50  YPGANAETISRTVAQPIEGEVNGVENMIYMSSNSSNSGQYSLSVTFEVGTDMDVAQNLVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    S L  + ++  + T       ++ +    +  +   +  S        D++  
Sbjct: 110 NRVSQALSSLPEEVQRQGVTTEKRSSNILLFASLTSENSMHDDLFLSNYATLNIKDELSR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P +L+    T+  +       N        G       
Sbjct: 170 IKGVGGITVFGAGDYSMRIWLYPDKLKARGLTSTDVVNAVREQNTQVAAGQIGQEPSPVD 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ V  + +++                +    I                 +      
Sbjct: 230 QDFQFTVNMRGKLNSTE-------------EFENIIVKTTPDGGMIRVRDIARVELGSQS 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            + + +     E        L           +         
Sbjct: 277 YNISNQLNGQPSAAIAVFLQPEANALKVAEGVKAKLDELSQKFPQGMKANIPFDTTTFVK 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S +    T  I   LV + + + +   +  L+   +I +++I T A+++ LG ++   S
Sbjct: 337 SSINEVIETLFISVILVFLTILLFLEDWRATLIPTIAIPVSLIGTFAVMAALGVSINTLS 396

Query: 417 IAGIVLGIGLAVDSNILVNER-IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E  +R  +  N     +           +  + +  L   +
Sbjct: 397 LFGLVLAIGIVVDDAIIVVENAVRNIDENNLEPRDAAIKAMEEITGPVIATTLVLLSVFI 456

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
              F G   G   R FA+T+  + + S   A+++  A+    +R K            F 
Sbjct: 457 PTAFLGGITGQLYRQFALTIATATIFSSINALTLSPALCAIFLRPKNPNRKHNIFTRAFN 516

Query: 533 LIPDCIAIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                    + R      R   + I     +          L  G   K  +   ++  +
Sbjct: 517 SAFSKTQKGYARILTSVVRRGAIMILAFIILTLGVFWRYDSLPKGFVPKEDLGYAMINVQ 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             D + +      + I     +  +G +N +    Y   D  A +               
Sbjct: 577 LPDAASLTRTKAVVDIITKRLEKVEGLENRIAISGYSIMDGAAASNNAAFWLVFKPWEER 636

Query: 648 LSTIQNTEIVGPKISRELIR 667
                + + +  ++S+ +  
Sbjct: 637 KKAGLSMDKIMGEVSKSISD 656



 Score = 84.7 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 104/285 (36%), Gaps = 6/285 (2%)

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            S +       +     LN   +F+  I         + +  +       Q  +IS Q  
Sbjct: 225 PSPVDQDFQFTVNMRGKLNSTEEFENIIVKTTPDGGMIRVRDIARVELGSQSYNISNQLN 284

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +        +++     ++    ++++  P     N         +  I + I 
Sbjct: 285 GQPSAAIAVFLQPEANALKVAEGVKAKLDELSQKFPQGMKANIPFDTTTFVKSSINEVIE 344

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            + IS I + + I +  + W   L     + + +  T    A  G+  N  ++  ++  I
Sbjct: 345 TLFISVILVFLTILLFLEDWRATLIPTIAIPVSLIGTFAVMAALGVSINTLSLFGLVLAI 404

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D ++V +   +N+     ++  RD   K++ E  G  + T++      +P A  G
Sbjct: 405 GIVVDDAIIVVENAVRNIDE--NNLEPRDAAIKAMEEITGPVIATTLVLLSVFIPTAFLG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G +   FA+ +A   + ++ +++ ++  +       +  N +
Sbjct: 463 GITGQLYRQFALTIATATIFSSINALTLSPALCAIFLRPKNPNRK 507



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 9/169 (5%)

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G +  I     + +Y+ +      W   L  + T+ L +  T+   ++  ++ N+     
Sbjct: 870  GNIVFIFGLAVLFVYLVLCAQYESWTLPLTIVLTVPLAVLGTVVALSVRQMDVNVYTQLG 929

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LI  +    +++ +  ++      + +S  +   ++        + T+    + VLP
Sbjct: 930  IVLLIAMTCKTAILISEFAKEES---NSGMSIVESALEASRLRFRPILMTAFTFILGVLP 986

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G     S     A G++ A    IF      + I     K  
Sbjct: 987  LTYATGAGAESRRSLGTATAGGMLSATLLLIFFVPVFYIIIMGASEKLK 1035


>gi|222086877|ref|YP_002545411.1| multidrug-efflux system [Agrobacterium radiobacter K84]
 gi|221724325|gb|ACM27481.1| multidrug-efflux system [Agrobacterium radiobacter K84]
          Length = 1065

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 67/552 (12%), Positives = 155/552 (28%), Gaps = 39/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P  +P               +V+    
Sbjct: 10  RPVFAGVLSVLIVVAGLI-----GLRLLPISEYPEVVPP-------------SIVVTAQY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   EG+   + +   +    +T++F      +     V  
Sbjct: 52  PGANPKVIAETVATPIEEQINGVEGMLYMNSQATSDGLMTLTVTFKLGTDPDKAQQLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + +   + T       +++                        D++   
Sbjct: 112 RVSQAEPRLPQNVRDLGITTVKSSPDLMMVVNLISPDNRYDITYLRNYATLNIKDRLARI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q          +    DP +  +     + ++      N      + G        
Sbjct: 172 EGVGQVRVFGSGDYSMRVWVDPQKSAERGLAASDIANAIRAQNIQAAAGIIGQSPSVPGI 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V  +  ++                +    I                 I    A  
Sbjct: 232 DVQLNVNAQGRLT-------------TPEEFGNIIVKSGSNGEITRLRDVARIELGAADY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L                +     +        L+A         +          
Sbjct: 279 SLRSLLDGKPAVAVPVFQAPGSNAITISDDVVKTMNELQAAMPDGVKYEIVYDTTQFVRS 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+ + +   +  ++   ++ +++I T A++ + G ++   S+
Sbjct: 339 SIDKVVHTLLEAIALVVIVVILFLQTWRASIIPLIAVPVSIIGTFAVMYVFGFSINALSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +        S   +           I    +  +   V L
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIENGLSPRDATYRAMKEVSGPIIAIALVLVAVFVPL 458

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   R FA+T+ +S +IS F ++++  A+   +++        +  +      
Sbjct: 459 AFISGLSGEFYRQFALTIAISTVISAFNSLTLSPALAALLLKDHHAPKDMLTRVMDAVFG 518

Query: 535 PDCIAIQFMRAR 546
                   +  R
Sbjct: 519 WFFRGFNKVFNR 530



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 80/188 (42%), Gaps = 9/188 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S    + +  ++  + + V    + +T         +++   +  + +  I +++++   
Sbjct: 306 SDDVVKTMNELQAAMPDGVKYEIVYDTTQFVRSSIDKVVHTLLEAIALVVIVVILFLQ-- 363

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  ++  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N
Sbjct: 364 -TWRASIIPLIAVPVSIIGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           +      +S RD   +++ E  G  +  ++      +P+A      G     FA+ +A  
Sbjct: 423 I---ENGLSPRDATYRAMKEVSGPIIAIALVLVAVFVPLAFISGLSGEFYRQFALTIAIS 479

Query: 805 IVVAASSS 812
            V++A +S
Sbjct: 480 TVISAFNS 487



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  +  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SVTLPLAIVMIVPMGVLAALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      +S    L   + TSMA  + V+P+      G  +  +  + +  G+
Sbjct: 960  -LEFEGRTPIQAAIESSRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRAAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      IF+     + I  
Sbjct: 1019 IGVTFFGIFMTPVFYVLIRR 1038


>gi|262371656|ref|ZP_06064935.1| protein-export membrane protein SecF [Acinetobacter junii SH205]
 gi|262311681|gb|EEY92766.1| protein-export membrane protein SecF [Acinetobacter junii SH205]
          Length = 322

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 156/309 (50%), Gaps = 3/309 (0%)

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           M  +      ++    D   I FM+        SIL +I SI  + T GLN G+DF GG+
Sbjct: 1   MTDLTQQDSKQYGRPDDAKIIPFMKIAKPAAIFSILLTIVSIFFIATKGLNLGLDFTGGV 60

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              +   + V  + V   L+     D   Q      + +VR+  Q    +    + E + 
Sbjct: 61  SAELNYAQAVQPAQVSQALDRAGFKDAVVQTLGSNTDLIVRMPVQE--DLNVADLSETIT 118

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K +      + +   + VG ++  EL  +    + ++ I MLIY+ IRF++  A+GA+ +
Sbjct: 119 KAVQLPNNAAEVHKVDAVGGQVGNELYIRSAGALALAMILMLIYVTIRFEFKLAMGAVLS 178

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L  DI   +G FALF  +F+L+ +AA+L ++G+S+ND +VV DR+R+N +      + R+
Sbjct: 179 LFHDIIIIIGTFALFQWQFDLSVLAAILAVMGFSLNDNIVVSDRIRENFRKI-RGATPRE 237

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++D ++ ETL R+++TSM   + VL M   GG  +  F++ M  G+ V   SSI+I    
Sbjct: 238 IVDIALTETLRRTIHTSMTLLLVVLAMMFVGGDGLHLFSVAMFVGVFVGTYSSIYIGTAF 297

Query: 820 LLFIYDWRA 828
            L+    R 
Sbjct: 298 ALWRGLNRQ 306


>gi|171464097|ref|YP_001798210.1| protein-export membrane protein SecD [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193635|gb|ACB44596.1| protein-export membrane protein SecD [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 619

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 156/501 (31%), Positives = 268/501 (53%), Gaps = 19/501 (3%)

Query: 30  SMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++L   P  +       + LGLDLRGG + +L+VD    V   +   + ++R  L+ + I
Sbjct: 113 NLLSNTPGWLNAMNALPMPLGLDLRGGVYFLLQVDMKGAVQKKVTSLATDIRGQLRDKNI 172

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               + +  + I+++F  +   E     +      +  ++        +V          
Sbjct: 173 RHQGIERGADFISINFGSTADAEATRSVLMTAQPELIWQVKPTGLSPKVVGE-------- 224

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                + ++  +A++Q++  + +R++++ + E  IQ+ G+ RI++QLPG QD +R + ++
Sbjct: 225 FKSTALKEIHDNAVKQNIITLNKRVNELAVKEPVIQQQGAERIVVQLPGVQDTARAKDII 284

Query: 207 GTTAKMSFHKVLP----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           G TA +      P        +    G+   R  +    + +  V  SG  +  A+A FD
Sbjct: 285 GRTATLESRLADPLVTTIAIGETPPPGMDTFRFGENRLGVFKKSVIFSGDRITDASAGFD 344

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR---VLTAPVINQAIPSGKAQI 319
               +P V+IS D  G R   EVTR+NIGKP+ ++L  +    +      Q+  S K QI
Sbjct: 345 QNQ-RPSVNISLDAAGGRVMQEVTRENIGKPMGMILFEKGKGEVLTIATFQSEFSSKFQI 403

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +G  T E+A  LA +LRAGSL   + I+EER +G  LG+++I KG  +++ G   I + M
Sbjct: 404 TGQPTTESANDLALLLRAGSLAAPMEIIEERTIGPSLGAENIEKGFKSLLIGFAAIAISM 463

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
           +  Y  +G  +  ++ +N++L +++LS+L ATLTLP IA + L +G+A+DSN+L+NERIR
Sbjct: 464 MAYYLLFGAFSVVALAVNLLLLISVLSMLQATLTLPGIAAMALALGMAIDSNVLINERIR 523

Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
           EE R + S   ++ +GF +A++TI DSN+T LIA + L  FG G ++GFA+   L IL S
Sbjct: 524 EELRNSASPQAAIAVGFDKAWATILDSNVTTLIAGLALLAFGSGPIKGFAVVHCLGILTS 583

Query: 500 MFTAISIVRAMMIFIIRYKKM 520
           MF+A+   R ++       K 
Sbjct: 584 MFSAVFFSRGLVNLWYGRHKK 604



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 48/309 (15%), Positives = 113/309 (36%), Gaps = 7/309 (2%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             P            +   +      G  I  +           +N  +D  GG  +  +
Sbjct: 307 TPPPGMDTFRFGENRLGVFKKSVIFSGDRITDASAGFDQNQRPSVNISLDAAGGRVMQEV 366

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               +   +     E  +   ++   F  E +   ++  QP    A    L +    +  
Sbjct: 367 TRENIGKPMGMILFEKGKGEVLTIATFQSEFSSKFQITGQPTTESANDLALLLRAGSLAA 426

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                 I     +GP +  E I KG   ++I   A+ I +   +   F   ++  L +++
Sbjct: 427 P---MEIIEERTIGPSLGAENIEKGFKSLLIGFAAIAISMMAYY-LLFGAFSVVALAVNL 482

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              +   ++      L  +AA+   +G +++  V++ +R+R+ ++    S S +  I   
Sbjct: 483 LLLISVLSMLQATLTLPGIAAMALALGMAIDSNVLINERIREELR---NSASPQAAIAVG 539

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            ++     + +++   I+ L +  +G   I  FA+    GI+ +  S++F +  ++   Y
Sbjct: 540 FDKAWATILDSNVTTLIAGLALLAFGSGPIKGFAVVHCLGILTSMFSAVFFSRGLVNLWY 599

Query: 825 DWRAKNARI 833
               K  ++
Sbjct: 600 GRHKKIQKL 608



 Score = 46.6 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 37/119 (31%), Gaps = 21/119 (17%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++ ++   IG L +LPNF  ++   +  S  P                   + 
Sbjct: 3   RYPLWKYLVIAVALLIGGLYSLPNFYGEAPAVQVSSTKP------------------TIK 44

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D      ++       + +   G+    +      I + F ++  +    D +   L 
Sbjct: 45  VDFATQSRVEKILT--EANINNTGVFF-EVAGNVGSIKVRFDNTDIQLRARDLLQQKLN 100


>gi|290474644|ref|YP_003467524.1| multidrug efflux pump (RND family) [Xenorhabdus bovienii SS-2004]
 gi|289173957|emb|CBJ80744.1| multidrug efflux pump (RND family) [Xenorhabdus bovienii SS-2004]
          Length = 1049

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 70/685 (10%), Positives = 183/685 (26%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     +  ++++P+  P +              V    +
Sbjct: 8   RPIFAWVIAIITMLSGLLAIM-----KLPVEQYPAIAPPSI---------SISAVYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +     +  ITL+F  +   +    +V   LQ 
Sbjct: 54  ATTVQNTVTQIIEQNMNGIDNLVYMASNSDSAGRMSITLTFEANTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    +       + +  +     D +       
Sbjct: 114 AMPLLPREVQQQGISVDKTTNSFLMVAGFISEDGSMTQDDIADYVGASVKDPLSRVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +    DP +L     TT  +       NN       G            
Sbjct: 174 ETMLFGNQ-YAMRIWLDPDKLLNYKMTTQDVITAIKAQNNQVAAGQLGGTPPVPGQRLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 +           
Sbjct: 233 SIIAQTRL-------------NSPEEFSNILLRMNRDGSHIRLRDVSVVELGAESYSIIG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +      A +          +           S   
Sbjct: 280 RFNGNSAAGIGIKLATGANALDTSKAVKKALAEMAPFFPHGLTVVYPYDTTPFVKISIFE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++  +V
Sbjct: 340 VVKTLAEAILLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +  S +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLPPKEATRKSMGQIQSALVGIALVLSAVFVPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           G   G   R F+IT+  ++++S+  A+ +  A+   +          I+       +   
Sbjct: 460 GGATGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPVAKGSHGIQIGFFGWFNRLF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +         + +   +L +  +             + +G +   V    
Sbjct: 520 EKSTHHYTDSVGRMLRGTGRYLLIYVVLIAGMAFMFTRMPSSFLPEEDQGVLLAIVQLPP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L+ +     + +    +  F +      G       V   +K        
Sbjct: 580 GSTQDQTQKVLDEINDYFHTKETEIVKSVFTINGFSFSGQGQNAGLVFVSLKDWDERKDD 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
              +            ++    +  
Sbjct: 640 KDKVPAIVDRANAHFSQIKEGIVFA 664



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 85/240 (35%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       +   I  +        +        +++  ++ ++    ++ 
Sbjct: 255 RDGSHIRLRDVSVVELGAESYSIIGRFNGNSAAGIGIKLATGANALDTSKAVKKALAEMA 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P               +  I + +  +  + + + + +++  + +   L     + +
Sbjct: 315 PFFPHGLTVVYPYDTTPFVKISIFEVVKTLAEAILLVFVVMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    A FG   N   + A++  IG  V+D +VV + +     +    +  ++   
Sbjct: 375 VLLGTFAILAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+ +     V  ++      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 433 KSMGQIQSALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 74/201 (36%), Gaps = 7/201 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFA 693
            + +         L +    +  G      L       +  +S I + + +   ++ W   
Sbjct: 841  DAMVFMEQLASQLPSGIGYDWTGMSYQERLSGNQAPALYTLSLIVVFLCLAALYESWSIP 900

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L I   L   ++ G++ ++     +LT IG S  + +++ +  +  ++    
Sbjct: 901  FSVMLVVPLGIVGALLATSIRGLDNDVYFKVGLLTTIGLSAKNAILIVEFAKDLIEKEGK 960

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + V+P+ +    G     +    +  G++ A S
Sbjct: 961  G--LIEATLDAVKMRLRPILMTSLAFMLGVMPLVLSNGAGSGAQNAVGTGVLGGMIAATS 1018

Query: 811  SSIFIAAPILLFIYDWRAKNA 831
             +I+      + I    +K +
Sbjct: 1019 LAIYFVPVFFVVIKRRFSKKS 1039


>gi|262376683|ref|ZP_06069911.1| acridine efflux pump AdeY [Acinetobacter lwoffii SH145]
 gi|262308393|gb|EEY89528.1| acridine efflux pump AdeY [Acinetobacter lwoffii SH145]
          Length = 1058

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 61/554 (11%), Positives = 158/554 (28%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L        +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILTI-----SKMPIAQYPTIAPPT-------------VTISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S     + I+L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGMDGLRYISSNSAGNGSSSISLNFDQGVDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +           A +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVRVTKSGASFLQVLAFYSPDSSLTADDIKDYVNSNIAEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP+++  L  T + ++      N        G        
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKMASLQVTPSDIANAIRTQNAQVAVGQLGGAPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +     +        +       
Sbjct: 229 VLNATVTAQSLL-------------QTPEQFSNIFLKNATSGAQVRLGDVARVELGADNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        LR       ++ +          
Sbjct: 276 QFDSKFNGKPAGGVAIKLATGANALDTAQAVEERLKQLRPNYPQGMVDQLAFDTTPFIEL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIKSVVKTLIEAIILVFLVMFLFLQNWRATIIPTMAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     +       + +    +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMVEEHLDPVAATEKSMKQISGALIGITSVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A++   A+   +++       + N +   F 
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLVVALTFTPALCATLLKQHDPNKPESNGIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                +   +  ++
Sbjct: 516 RWFNSSFDKVSVKY 529



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 90/263 (34%), Gaps = 8/263 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            F         +   V L  V              +        +        +++   +
Sbjct: 245 QFSNIFLKNATSGAQVRLGDVARVELGADNYQFDSKFNGKPAGGVAIKLATGANALDTAQ 304

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
            +E   K++    P   +              I+  +  +I + I + + +++  + W  
Sbjct: 305 AVEERLKQLRPNYPQGMVDQLAFDTTPFIELSIKSVVKTLIEAIILVFLVMFLFLQNWRA 364

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +     + + +  T     +FG   N   + A++  IG  V+D +VV + +     +  
Sbjct: 365 TIIPTMAVPVVVLGTFAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMVE 422

Query: 753 TSISFRDLIDKSINETLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVA 808
             +      +KS+ +  G  +  TS+ +    +PMA +GG   VI   F+I +   +V++
Sbjct: 423 EHLDPVAATEKSMKQISGALIGITSVLS-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLS 481

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
              ++     +   +      N 
Sbjct: 482 LVVALTFTPALCATLLKQHDPNK 504



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 63/170 (37%), Gaps = 14/170 (8%)

Query: 674  IISAIAMLIYIWIRFK---WYFALGAITTL--ILDITKTLGFFALFG---IEFNLTAVAA 725
             +S + + + +   ++     F++  +  L  +  +  T G   L     +  N+    A
Sbjct: 884  ALSLLIVFLCLAALYESWSIPFSVLLVVPLGIVGALLLTFGGMVLLQNPNLSNNIYFQVA 943

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ +IG S  + +++ +  ++   L        +    +    L   + T++A    VLP
Sbjct: 944  IIAVIGLSAKNAILIVEFAKE---LQEQGEELFEATLHAAKMRLRPIIMTTLAFGFGVLP 1000

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +A+    G     S    +  G++ +    IF      ++I        +
Sbjct: 1001 LALASGAGAGSQHSVGYGVLGGVISSTLLGIFFIPVFYVWIRSVFKYKPK 1050


>gi|262173910|ref|ZP_06041587.1| protein-export membrane protein SecD [Vibrio mimicus MB-451]
 gi|261891268|gb|EEY37255.1| protein-export membrane protein SecD [Vibrio mimicus MB-451]
          Length = 612

 Score =  194 bits (491), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 152/512 (29%), Positives = 261/512 (50%), Gaps = 25/512 (4%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            +   S+  ++   +  + I LGLDLRGG   +L VD D           D ++  L+ E
Sbjct: 113 TYSYVSVAPKWLDELGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAE 172

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            +   S++ + N    +F     +    + V  +LQ        +  +   +      + 
Sbjct: 173 RLRGVSVQAVGND---AFDVKTQQPQALNHVRQYLQ--------ENYRGWDIRQGSDHLQ 221

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + 
Sbjct: 222 VQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKN 281

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA ++F++           F    L D +G   ++  +  +SG H+  A A  D  
Sbjct: 282 VIGATASLAFYEAKS--PTDARSFDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNM 339

Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
               V        G            +    V R+         +    + +    Q+  
Sbjct: 340 GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSERVISVATIQSQL 399

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  GL 
Sbjct: 400 GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLA 459

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432
           + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N+
Sbjct: 460 MTLTFMALWYRRLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 519

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T+
Sbjct: 520 LIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTL 579

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GL +L SMF+ +   RA++  +      + + 
Sbjct: 580 GLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|317047202|ref|YP_004114850.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Pantoea
           sp. At-9b]
 gi|316948819|gb|ADU68294.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. At-9b]
          Length = 1049

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 63/574 (10%), Positives = 155/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +        ++++P+  P               + ++   
Sbjct: 8   RPIFAWVIAIIIMLAGALSII-----SLPIEQYPNVAPPA-------------VEIQASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S       +TL+F      +    +V  
Sbjct: 50  PGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSDSSGTLTLTLTFQSGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + +   +         ++++    D       + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQSQGIQVKKSSSSFLMVAGFVSDDPNMTQNDISDYVASNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +       N        G        
Sbjct: 170 PGVGDTQVFGAQ-YAMRIWLDPHKLNNFQLTPVDVISALGTQNTQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGNILLKVNTDGSQVRLRDVAKIELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T +      A L+         +           
Sbjct: 276 DIIARYNGKPASGIGIKLATGANALDTADAVKTELAKLQPFFPSGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+++  G ++   ++
Sbjct: 336 SIFEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIIAACGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+         +K ++     +   
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPVEKGSHGKTTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++    V         +   L  +
Sbjct: 511 FFGWFNRLFDKSTHHYVDSVGHIVRSTGRYLVLY 544



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  +      + +        +++     ++    K+    
Sbjct: 258 SQVRLRDVAKIELGGESYDIIARYNGKPASGIGIKLATGANALDTADAVKTELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PSGLKVVYPYDTTPFVKISIFEVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A  G   N   +  ++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFAIIAACGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 436 EQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 68/183 (37%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            + +         L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  DAMNLMEQLAAKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L F  L G+  ++  V  +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + VLP+A+    G     +    +  G+V A +
Sbjct: 958  G--LVESTLEASRMRLRPILMTSLAFILGVLPLAISTGAGSGAQNAVGTGVMGGMVTATA 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|146305861|ref|YP_001186326.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           mendocina ymp]
 gi|145574062|gb|ABP83594.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas mendocina ymp]
          Length = 1045

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 69/527 (13%), Positives = 154/527 (29%), Gaps = 40/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL       +    + ++P  +P               + +    
Sbjct: 9   RPVFATVISIVIVLAGLAA-----MRALPIAQYPEILPP-------------QVSVSAAY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIGV----FSMRQIQNKITLSFADSRFKENIADKVTL 117
               +  + +  +  L   +      +     S       +T+ F      +     V  
Sbjct: 51  PGASSQVIAETVAAPLEQAINGVEDMIYQLSNSSSSGAMSLTVYFEVGTDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   +KL  + ++  +    +    + +            I  S   +   ID++   
Sbjct: 111 KVQAALAKLPEEVRRQGVKVEKKSSDILQVITLYSPDDSRDPIFISNYALINVIDELKRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P +L Q   T   +       N+      FG + L++  
Sbjct: 171 PGVGDASQFGSKDYSMRIWLRPDKLAQYNLTPTDVVNAIREQNSQFAAGSFGQQPLKEPQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  +   +                +    I   +             +       
Sbjct: 231 DFTYTVTTQGRFT-------------DPKEFENVILRTDATGASLLLKDVARVELGAQDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T E        L           +          
Sbjct: 278 SLVTTLNGQQNAAFGIYLQPGANALDTAEAVQRTMERLSKRFPEGIAYKIPYDTTKFVQV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   +I ++++ T A + +LG ++ L ++
Sbjct: 338 SIEEVIHTFFEALVLVVLVVFIFLQNWRATLIPVLAIPVSLVGTFAGMYMLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +           I    +      V 
Sbjct: 398 FGMVLAIGIVVDDAIVVIENVERVMRTQGLGPREASIKAMEEVTGPIIAIVLVLCAVFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   + FAIT+ +S++IS   A+++  A+   +++    
Sbjct: 458 VGFLGGLAGQMYKQFAITIAVSVVISGIVALTLSPALCALLLKPGHH 504



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A  R +E + K+  E +      +T         E+I      +++  + + I++ 
Sbjct: 303 DTAEAVQRTMERLSKRFPEGIAYKIPYDTTKFVQVSIEEVIHTFFEALVLVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + +  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVLAIPVSLVGTFAGMYMLGFSINLLTLFGMVLAIGIVVDDAIVVIENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +  R+   K++ E  G  +   +      +P+   G   G +   FAI +A
Sbjct: 419 -ERVMRTQGLGPREASIKAMEEVTGPIIAIVLVLCAVFVPVGFLGGLAGQMYKQFAITIA 477

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             +V++   ++ ++  +   +  
Sbjct: 478 VSVVISGIVALTLSPALCALLLK 500



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 66/169 (39%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G    +   I + + +  ++ +W   L  +T +   +   +    L GI+ ++     +
Sbjct: 869  SGAQAFVFGLILVFLILAAQYERWTLPLAVVTAVPFAVFGAILAVWLRGIQNDVYFQVGL 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG +  + +++ +     + L        D   ++        V TS+A  +  +P+
Sbjct: 929  VTLIGLAAKNAILIVEFA---VLLRAEGKGIFDSALEAAKLRFRPIVMTSLAFILGCVPL 985

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+    G +   S    +  G++ A   + F+     L +     + +R
Sbjct: 986  AISSGAGSASRHSIGTGVIGGMLAATLLATFLIPMFYLLVETGAQRLSR 1034



 Score = 47.4 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 62/530 (11%), Positives = 136/530 (25%), Gaps = 37/530 (6%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRIS-LGLDLRGGSHLVLEVDEDD 64
                L  ++   G++  +     +      P       I+   L      +   E     
Sbjct: 532  LKRSLVGLLLFGGMIALIMLLFARVPGSLVPDEDQGYVINAYYLPPAASLNRT-EALSSA 590

Query: 65   FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                 ++  + E         +  F +R       +   D   +                
Sbjct: 591  VSQQLMEHPAVEDVVTFAGFDVLTFGVRSNAGVSFVPLKDWSERRTPELDARNLTHEFMG 650

Query: 125  KLNVDPKKNLLVTTTEKEISIVLS----QNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             +    K  L+++     I+ + +    ++ I      ++EQ  E ++  +         
Sbjct: 651  -MGAAQKDGLVLSFNPPPITGMSTTGGFESYIQDRSGGSVEQLGEKVQAFVQAASQRPEL 709

Query: 181  IQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                      + Q   + D ++ R L  + + +         S     F +         
Sbjct: 710  AGVQSTFSANVPQYYIDLDRTKTRALGVSVSDVFTAMQATFGSYYVNDFTLFGRTWQVSL 769

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
            Q   E                         V +            + R            
Sbjct: 770  QSESE---------------FRRKPEDLGQVYVRSSTGDLVPLSTLLRVRRILGPDSYDR 814

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              V  +  +      G +       ++               I     E    G+     
Sbjct: 815  FNVYPSAKVLGGPAPGYSSGQALAAMQAVADEVLGEDYSLGWIGSAYQELATQGS----- 869

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                G  A V GL+L+ L +   Y      L    ++   V   +  + L G    +   
Sbjct: 870  ----GAQAFVFGLILVFLILAAQYERWTLPLAVVTAVPFAVFGAILAVWLRGIQNDVYFQ 925

Query: 418  AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             G+V  IGLA  + IL+ E       + + +F S        +  I  +++  ++  V L
Sbjct: 926  VGLVTLIGLAAKNAILIVEFAVLLRAEGKGIFDSALEAAKLRFRPIVMTSLAFILGCVPL 985

Query: 478  FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                  G  +       +   +L +   A  ++    + +    +  S  
Sbjct: 986  AISSGAGSASRHSIGTGVIGGMLAATLLATFLIPMFYLLVETGAQRLSRR 1035


>gi|300692983|ref|YP_003753978.1| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum PSI07]
 gi|299080043|emb|CBJ52717.1| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum PSI07]
          Length = 1049

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 71/664 (10%), Positives = 180/664 (27%), Gaps = 49/664 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G +        Q  + ++P+  P               +++    
Sbjct: 8   RPVFAWVLALFIIVAGAISV-----TQLPIAQYPTIAPP-------------SIIITATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN--KITLSFADSRFKENIADKVT 116
                  L       +   +             +       IT++F            V 
Sbjct: 50  PGASAKTLDDAVTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V ++L     +  +     +   ++ +           +     I R  +++I  
Sbjct: 110 NRLKRVEARLPSSVTQQGVQVDKTRSNFLLFATLASKDGKMDPVALGDYISRNVLNEIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q +        +    DP++L     T   +       N        G      +
Sbjct: 170 VPGVGQAVLFGT-ERAMRIWIDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSN 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +   V + G             T +    +   +    +        +      
Sbjct: 229 QP----IAATVVVEGQ---------MTTTEQFGNIVLVSKPDGSQVRIKDVARLELGGQT 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +    I+          +   T +        L           V         
Sbjct: 276 YATSARINGQPISAIGVQLSPTGNALGTAKAVKAKLDELSKYFPAGVEYKVPYDTSKFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   ++ L+    + ++++   A ++ LG ++ + +
Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLVFLQNIRYTLIPSIVVPISLLGAFATMNALGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +      +      +    I    +  +   +
Sbjct: 396 MFGLVLAIGILVDDAIVVVENVERIMSEEGLPPREATRKAMGQITGAIIGITLVLMAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDI 525
            + FF G      R F+++M  SI  S   A+++  A+   +         ++K      
Sbjct: 456 PMAFFSGSVGAIYRQFSLSMVASIFFSALMALTLTPALCATLLKPIEKGSHHEKKGFFGW 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        ++     +     + I  ++ +  +L    L             +  
Sbjct: 516 FNRMFTSTTNRYQSLVERMLKKTFRYMVIYGALIAAVVLLFMRLPSSFLPNEDQGYIITN 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +    +     LE ++  +  +Q+    +N +    +    +     ++    K  ++ 
Sbjct: 576 IQLPPAASANRTLEVIKKVEGYYQHEKAVENIVAVQGFSFSGNGPNAALVFTTLKDWSQR 635

Query: 646 VPLS 649
               
Sbjct: 636 GADQ 639



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 89/260 (34%), Gaps = 6/260 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            F   + +       V +  V       Q    S +      + +       G+++   +
Sbjct: 246 QFGNIVLVSKPDGSQVRIKDVARLELGGQTYATSARINGQPISAIGVQLSPTGNALGTAK 305

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
            ++    ++++  P            K  +  I + +  +  +   + + + +  +   +
Sbjct: 306 AVKAKLDELSKYFPAGVEYKVPYDTSKFVQISIEEVVKTLFEAMALVFLVMLVFLQNIRY 365

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +          G   N+  +  ++  IG  V+D +VV + +     +  
Sbjct: 366 TLIPSIVVPISLLGAFATMNALGFSINVLTMFGLVLAIGILVDDAIVVVENV--ERIMSE 423

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +  R+   K++ +  G  +  ++      +PMA + GSV      F++ M   I  +A
Sbjct: 424 EGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVASIFFSA 483

Query: 810 SSSIFIAAPILLFIYDWRAK 829
             ++ +   +   +     K
Sbjct: 484 LMALTLTPALCATLLKPIEK 503



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 80/240 (33%), Gaps = 9/240 (3%)

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
              +    + +         V  S            Q         VR+       V+   
Sbjct: 777  RMQPEDIMNLYVRNTQGSMVPMSAFAKGHWMVGPVQLVRYNGYPSVRISGDATTGVSTGD 836

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
             ++ +++  + +      + T     + S       +  +  S +A+ + +   ++ W  
Sbjct: 837  AMDEMERLASRLPAGIGFEWTGQSLQEKSSGSQAPALYAL--SLLAVFLVLAALYESWSI 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I  + L +  TL    L  +  ++     ++ ++G S  + +++ +  +    L  
Sbjct: 895  PAAVILVVPLGVLGTLLGVTLRVMPDDVYFKVGLIAVVGLSAKNAILIIEFAKD---LQA 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA 809
                  +   ++++      + TS A  + VLP+A+  G+      +    +  G++ A 
Sbjct: 952  QGKGLIEATLEAVHLRFRPIIMTSFAFILGVLPLAIATGASSASQRAIGTGVMGGMIAAT 1011


>gi|294851681|ref|ZP_06792354.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella sp. NVSL
           07-0026]
 gi|294820270|gb|EFG37269.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella sp. NVSL
           07-0026]
          Length = 1051

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVND 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 82/266 (30%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG    + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLVAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 61/540 (11%), Positives = 138/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGL   + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLVAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|215488573|ref|YP_002331004.1| multidrug efflux system protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|215266645|emb|CAS11084.1| multidrug efflux system protein [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 1034

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 70/667 (10%), Positives = 179/667 (26%), Gaps = 51/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIQEVVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMIEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +           +      
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGAFFGW 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + +         + +  +++ +   +  L         + +G     
Sbjct: 515 FNTTFDHSVNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTM 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +           +  L+ +    +  +  + E  F V      G +         +K   
Sbjct: 575 IQLPAGATQERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWE 634

Query: 643 TEIVPLS 649
                 +
Sbjct: 635 ERSGDEN 641



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  +  + I + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIQEVVKTLFEAIILVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMIEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 915  ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
              + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 973  PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 1018


>gi|237785617|ref|YP_002906322.1| protein-export membrane protein [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758529|gb|ACR17779.1| protein-export membrane protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 412

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 132/301 (43%), Gaps = 11/301 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I+F+  R    GI  +  +  +  +   G   GIDF+GG ++ + A       V  +  E
Sbjct: 17  IEFVSQRRRWYGIYAIILVICLVSIIFRGFTLGIDFEGGTKITMPAGDVSKTEVADTFHE 76

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTE 655
           +  +     Q         V ++ +  +    +   E +  K                  
Sbjct: 77  ATGVEAQQVQIIGSGNARNVEIESKHLNDDEISEAREALFSKYHPKDASGKETPDSIGDS 136

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V       +  + ++ +I+    + +YI +RF+   A+ AI+ L +D     G +++ G
Sbjct: 137 TVSNSWGSTITHRMVLALIVFLALIFLYITVRFERDMAIAAISALAVDAIVVSGLYSIIG 196

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETLGRSV 773
            E +  +V  +LT++ YS+ D VVV+D++ +N    T +   ++ +  + ++N+T+ RS+
Sbjct: 197 FEVSPASVIGLLTVLSYSLYDTVVVFDKVHENTAGLTKTTTSTYAEQANLAVNQTMMRSI 256

Query: 774 YTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            TS+ + + +  +      + G   +   ++    G++    SSIF+A PIL+ +   + 
Sbjct: 257 STSLFSILPIGALMVVAVWLLGVGTLKDLSLVQLLGVIEGTFSSIFLATPILVSLKSRQK 316

Query: 829 K 829
           K
Sbjct: 317 K 317


>gi|70728711|ref|YP_258460.1| multidrug/solvent RND transporter TtgB [Pseudomonas fluorescens
           Pf-5]
 gi|68343010|gb|AAY90616.1| multidrug/solvent RND transporter TtgB [Pseudomonas fluorescens
           Pf-5]
          Length = 1048

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 189/687 (27%), Gaps = 39/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AISVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + S  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLLVIGVVSEDGSMSKDDLSNYIVSNMQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNNYNLTPVDVKTAVAAQNVQVSSGQLGGLPALPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +       ++G          
Sbjct: 233 TIIGKTRL-------------QTAEQFKAILLKVNKDGSQVRLGDVADVGLGGENYAISA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L          +           S   
Sbjct: 280 QFNGKPASGLAVKLANGANALDTAKALRNTIKDLEPFFPQGMKVVFPYDTTPVVTESIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLLGTFGILAAAGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEEGLSPKEATKKSMGQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
            G      + F+IT+  ++ +S+  A+    A+   +        +   K       +R 
Sbjct: 460 SGSTGVIYKQFSITVVSAMALSVLVALIFTPALCATMLKAVPQGEHATEKRGFFGWFNRT 519

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           F        + +          +L  +  +  +          F      GVL  +    
Sbjct: 520 FDRSVKSYERGVGNMLRHKVPYLLAYVLIVLGMIWLFTRIPTAFLPEEDQGVLFAQVQTP 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +   +    + + ++     D EK+ +  +    G + A       +   + +     + 
Sbjct: 580 AGSSAERTQVVVDEMRAYLLDKEKDTVASVFTVNGFNFAGRGQSSGMAFIMLKPWGERSA 639

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI 678
           +N        +++        ++ +  
Sbjct: 640 ENNVFNLATRAQQHFFSFRDAMVFAFA 666



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   IS Q      + L        +++   + L    K +    
Sbjct: 258 SQVRLGDVADVGLGGENYAISAQFNGKPASGLAVKLANGANALDTAKALRNTIKDLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I+  +  ++ + + + + +++  + +   +    T+ + + 
Sbjct: 318 PQGMKVVFPYDTTPVVTESIKGVVETLVEAIVLVFLVMFLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   +  ++  IG  V+D +VV + +     ++   +S ++   KS+
Sbjct: 378 GTFGILAAAGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMHEEGLSPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++     +LPMA + GS       F+I +   + ++   ++     +
Sbjct: 436 GQIQGALVGIALVLSAVLLPMAFFSGSTGVIYKQFSITVVSAMALSVLVALIFTPAL 492



 Score = 65.9 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 67/164 (40%), Gaps = 7/164 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             +S + + + +   ++ W   +  +  + L I   L   ++ G+  ++     +L  IG 
Sbjct: 876  ALSLLMVFLCLAALYESWSIPIAVMLVVPLGIIGALMATSMRGLSNDVYFQVGLLVTIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +  ++   L+    S  D   ++    L   + TS+A  + V+P+A+    
Sbjct: 936  AAKNAILIVEFAKE---LHEQGRSLVDAAVEACRMRLRPIIMTSLAFVLGVVPLAISTGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G     +    +  G++ A   +IF      + +     + A +
Sbjct: 993  GSGSQHAIGTGVIGGMLTATILAIFWVPLFFVTVSSMGRRKADL 1036


>gi|170724502|ref|YP_001758528.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           woodyi ATCC 51908]
 gi|169809849|gb|ACA84433.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella woodyi ATCC 51908]
          Length = 1045

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 73/691 (10%), Positives = 181/691 (26%), Gaps = 51/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+           + ++PS  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGLMAI-----KGLPVSQYPSIAPPT-------------VAITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S      +ITL+F      +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQRMTGLDHLRYIKSTSDSFGNAEITLTFNAEADGDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + +   +         +++     D       + S  +     D +   
Sbjct: 110 KLQLAMPLLPQEVQAQGVGVAKTSAGFLMVLGFVSDDGSMDKADISDYVAANIQDPMSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L+Q   T+A +       N        G        
Sbjct: 170 AGVGDIQLFGAQ-YAMRIWLDPMKLKQYSLTSADVVMAIREQNAQVSAGQLGGSPAVMGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   ++   + F      +       
Sbjct: 229 ELNATISAQSRL-------------QTAEEFEQIVLKSDVSGAKVFLGDVSTVEVGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +          +       A  +   T          ++         ++          
Sbjct: 276 MVNSFYNGKPASGMAIQLAAGANALDTAAAVMAQIDEMKPFFPQGLNVVLPFDTTPFVSK 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  ++++ +   +  L+   ++ + ++ T  +L++ G ++   ++
Sbjct: 336 SIEGVVHTLLEAVILVFFIMYLFLQNFRATLIPMIAVPVVLLGTFGILAVTGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGCSPLEATRKSMDQITGALVGIGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + F  G      R F+IT+  ++ +S+  A+ +  A+   +                   
Sbjct: 456 MAFMSGSTGVIYRQFSITIVSAMALSVLVAVILTPALCATMLKPVEKGHGYTNKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A+   R     V    L    +   +         + +G I   V
Sbjct: 516 NRTFDRWTSRYEASVAVIIKRTGRVFVIYLALVVATAWVFMRLPTAFLPDEDQGVIFSQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +             ++ +    +  +  + +  F V      G           +K    
Sbjct: 576 MLPANATQESTMKVMDKVSDYLLESEKENVQSVFAVSGFSFAGMGQNMGIAFIGLKPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              P   +Q+           +    +   +
Sbjct: 636 RSNPGQDVQSIANRAMGYFMTIKEAFVFAFV 666



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 82/235 (34%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +   ++        + +        +++     +     ++    P 
Sbjct: 260 VFLGDVSTVEVGAESYMVNSFYNGKPASGMAIQLAAGANALDTAAAVMAQIDEMKPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                          + I   +  ++ + I +   +++  + +   L  +  + + +  T
Sbjct: 320 GLNVVLPFDTTPFVSKSIEGVVHTLLEAVILVFFIMYLFLQNFRATLIPMIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A+ G   N   + A++  IG  V+D +VV + +     +     S  +   KS+++
Sbjct: 380 FGILAVTGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGCSPLEATRKSMDQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V   +      +PMA   GS       F+I +   + ++   ++ +   +
Sbjct: 438 ITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVAVILTPAL 492



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 79/256 (30%), Gaps = 12/256 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +        S + G    + F G     ++    PG S              
Sbjct: 789  VRNDQGEMVPFSAFATGSWEFGAPRLERFGGLPAVNIQGATIPGFSTGAAMDSIETMAGK 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++     L+   +   W   +  I  + L
Sbjct: 849  LPAGFGIAWNGLSYEERLSGNQAPMLYALSILVVF---LVLAALYESWSVPISVILVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L      G+  ++     +LT +G +  + +++ +  ++    Y    S  D   
Sbjct: 906  GIIGALLATYGRGLNNDVFFQVGLLTTVGLATKNAILIVEFAKEY---YEKGASLTDATL 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             ++   L   + TS+A  + V+P+A+    G     +    +  G++ +    IF     
Sbjct: 963  HAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGAQNAIGTGVVGGMLSSTFLGIFFVPLF 1022

Query: 820  LLFIYD---WRAKNAR 832
             + +      R +  +
Sbjct: 1023 FVIVERIFSKREQKKK 1038


>gi|56384968|gb|AAV85950.1| AcrB [Morganella morganii]
          Length = 1058

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 69/690 (10%), Positives = 182/690 (26%), Gaps = 51/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIITMLAGLLAIM-----KLPVAQYPTVAPPT-------------ISISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                  +Q      +   +      V+      +     I+L+F      +    +V  
Sbjct: 50  PGADAETVQNTVTQVIEQNMNGIDKMVYMSSTSDSAGSMNISLTFEADANPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I   
Sbjct: 110 KLQLAMPLLPQEVQQQGITVEKSTSSFLLVAGFVSEDGTMSQNDIADYVGSNVKDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L +   +T  +     + NN       G      + 
Sbjct: 170 TGVGETQLFGTQ-YAMRIWLDPDKLVKYNLSTIDIINAIQVQNNQVAAGQLGGTPPVPNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +                 +       
Sbjct: 229 RLNTSIIAQTRL-------------NTPEQFQEIMLRVNTDGSVVRLKDVAYVELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        +          +           
Sbjct: 276 GIIARYNGKPAAGIGIKLATGANALDTAKAVRDKLTEMSEFFPDGLEVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A L+  G ++   ++
Sbjct: 336 SIFEVVKTLVEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFATLAAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +             +  +   +  S +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQETGLPPKEATKISMGQIQSALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+F A+ +  A+   +           +       
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMILSVFVALILTPALCATMLKPVAKGSHGSQTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +     +     D +         + +   +L +   +            + +G +   V
Sbjct: 516 NRVFEKQTNHYTDSVGRMLRGTGRYLLIYVLLVAGMIVMFTRLPTSFLPEEDQGVLLSMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      ++ L+ +    +  +    E  F V      G          ++K    
Sbjct: 576 QLPPGSTQEQTQTVLDGVSKYYLEDEKKVVESVFTVNGFGFAGQGQNMGLAFIVLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                  ++       +         I  V
Sbjct: 636 RKAKEDKVEAVVARANQHFFTNSSASIFAV 665



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 86/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   I  +        +        +++   + +     +++E  P 
Sbjct: 260 VRLKDVAYVELGAENYGIIARYNGKPAAGIGIKLATGANALDTAKAVRDKLTEMSEFFPD 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLEVVYPYDTTPFVKISIFEVVKTLVEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   + A++  IG  V+D +VV + +     +  T +  ++    S+ +
Sbjct: 380 FATLAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQETGLPPKEATKISMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
                V  +M      +PMA +GGS       F+I +   ++++   ++ +   +
Sbjct: 438 IQSALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMILSVFVALILTPAL 492



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 87/281 (30%), Gaps = 7/281 (2%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +                V  S     +    +F +   E+
Sbjct: 761  FIDRGRVKKVYVQADAPFRMQPKNIAEQYVRNNQGQMVPFSAFIDTKKDPWTFGSPRLER 820

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI- 674
               +      G +       + +         L      E  G     +L       +  
Sbjct: 821  YNGIPAMQIQGSAAPGKSSGDAMALMENMAKELPQGFGVEWTGMSYQEKLSGNQAPALYT 880

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            IS I + + +   ++ W      +  + L +   L      G++ ++     +LT IG S
Sbjct: 881  ISLIVVFLCLAALYESWSVPFSVMLVVPLGVIGALLLTHARGLDNDVYFKVGLLTTIGLS 940

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ +  +  M+         +   +++   L   + TS+A  + V+P+ +    G
Sbjct: 941  AKNAILIVEFAKDLMEKEGKG--LIEATLEAVKMRLRPILMTSLAFMLGVIPLVLSNGAG 998

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 +    +  G++ A S +IF      + I    +K +
Sbjct: 999  SGAQNAVGTGVFGGMIAATSLAIFFVPVFYVVIRRRFSKKS 1039



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 58/525 (11%), Positives = 134/525 (25%), Gaps = 33/525 (6%)

Query: 7    LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
              +L  ++   G+++       +      P       +S+     G +    +   D   
Sbjct: 539  RYLLIYVLLVAGMIV----MFTRLPTSFLPEEDQGVLLSMVQLPPGSTQEQTQTVLDGVS 594

Query: 67   NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +L+     + S     G G     Q      +   +   ++   DKV   +   N   
Sbjct: 595  KYYLEDEKKVVESVFTVNGFGFAGQGQNMGLAFIVLKNWDERKAKEDKVEAVVARANQHF 654

Query: 127  NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE--QSMEIIRQRIDQIGISESTIQRL 184
              +   ++        + +  S     +++ +A +  +++   R ++ ++      +   
Sbjct: 655  FTNSSASIFAVNIPPIVELGSSSGFDLELMDNANQGHEALTAARNQLLKMAGEHPDMLVQ 714

Query: 185  ---GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      Q     D  +   L      ++              F             
Sbjct: 715  VRPNGMEDTSQYHIHVDQQKAEALGVDIKTINAALSTMFGGSYVNDF------------- 761

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                     G           P   +P           +         I         G 
Sbjct: 762  ------IDRGRVKKVYVQADAPFRMQPKNIAEQYVRNNQGQMVPFSAFIDTKKDPWTFGS 815

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +   +   +   A  L   +                   +  S + 
Sbjct: 816  PRLERYNGIPAMQIQGSAAPGKSSGDAMALMENMAKELPQGFGVEWTG-MSYQEKLSGNQ 874

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  I   +V + L  +             + L VI  L L    G    +    G++
Sbjct: 875  APALYTISLIVVFLCLAALYESWSVPFSVMLVVPLGVIGALLLTHARGLDNDVYFKVGLL 934

Query: 422  LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              IGL+  + IL+ E  ++   ++ + +  +           I  +++  ++  + L   
Sbjct: 935  TTIGLSAKNAILIVEFAKDLMEKEGKGLIEATLEAVKMRLRPILMTSLAFMLGVIPLVLS 994

Query: 481  ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
               G GA       +   ++ +   AI  V    + I R    KS
Sbjct: 995  NGAGSGAQNAVGTGVFGGMIAATSLAIFFVPVFYVVIRRRFSKKS 1039


>gi|167568973|ref|ZP_02361847.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           oklahomensis C6786]
          Length = 1066

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 69/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGIAAIF-----TLPISQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+RL     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTRLTNYGLTPVDVTTAITQQNVQIAGGQIGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAKIGLGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 SFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDDLSKDFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPREATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVTAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRNFNASRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        L        +++A  + +      +++  
Sbjct: 258 SQVRLKDVAKIGLGGENYSFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDDLSKDF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S R+   K++
Sbjct: 378 GTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVTAMVLSVLVALILTPAL 492



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMTAMESLAKKLPNGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     +  +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQSEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 61/516 (11%), Positives = 142/516 (27%), Gaps = 32/516 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    + + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLNDEKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYAQRQHANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA--IEQSMEIIRQRIDQIGISES 179
            +  +        ++         +  +     ++  +A     ++   R ++  +   + 
Sbjct: 650  MFGRYAGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGHGHDALMAARNQLLMLAAKDP 709

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            T+Q +  + +      + D  R +        ++   +    S       V    D+DG 
Sbjct: 710  TLQGVRPNGLNDTPQYKVDIDREKANALG---VTASAIDQTFSIAWASSYVNNFLDTDGR 766

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                  KV +        T +     +            A      T  +        + 
Sbjct: 767  I----KKVYVQSDAPFRMTPDDMNIWYVRNGSGGMVPFSAFSTGHWTYGSPKLERYNGIS 822

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
               +                    T   +         G     L+  E ++        
Sbjct: 823  AMEIQGQAAPGKSTGQA------MTAMESLAKKLPNGIGYSWTGLSFQEIQSGSQA---- 872

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   AI   +V + L  +             + L VI  L   +L G    +    G
Sbjct: 873  ---PILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVG 929

Query: 420  IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            ++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  + L 
Sbjct: 930  LLTTVGLSAKNAILIVEFARELQQSEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLA 989

Query: 479  FF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                 G  +       +   ++ + F AI ++    
Sbjct: 990  ISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|255693717|ref|ZP_05417392.1| AcrB/AcrD/AcrF family protein [Bacteroides finegoldii DSM 17565]
 gi|260620534|gb|EEX43405.1| AcrB/AcrD/AcrF family protein [Bacteroides finegoldii DSM 17565]
          Length = 1010

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 90/687 (13%), Positives = 194/687 (28%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAQPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     +   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMAGYGISPIDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T     D+   E   R              A +    
Sbjct: 233 L--------------------MHTADEFNDLIIKESDNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K  S   +   G    +  +  + IT +     + F  
Sbjct: 393 LSVGLVVDDAIVMTENIYIRIEKGMSPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ +S        FF   + +
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQSWFYAKTEPFFEGMNRL 512

Query: 539 AIQ----FMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+R R+  +  +++                  ++ +  I +       V    
Sbjct: 513 YSRSLAAFLRKRWIALPFTVITICLIGILWNIVPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISF---------QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S          +   G  N  + L+     +  Q  V E + K + +
Sbjct: 573 IRDYTEDINQLVDSILPDAEAVTARVSSGSGNVRITLKDMQDRNYTQMEVAEKISKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +    +         +  + ++
Sbjct: 633 KTMARSFVQQQSSFGGRRGSMPVQYVL 659



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V + +++   ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASINEVKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ A++  +G  V+D +V+ + +          +S ++   +   E     + 
Sbjct: 380 GFSINVLSMLAIVLSVGLVVDDAIVMTENI---YIRIEKGMSPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G        F+I ++  +++++ +++     +   +   R K +
Sbjct: 437 TTITLVAVFFPIVFMDGMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLVIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            VV+   +++I   I  +I   R K 
Sbjct: 983  VVSTLLTMYIVPAIYSYISTNRIKK 1007


>gi|320534399|ref|ZP_08034883.1| protein-export membrane protein SecF [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320133398|gb|EFW25862.1| protein-export membrane protein SecF [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 367

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 77/309 (24%), Positives = 145/309 (46%), Gaps = 13/309 (4%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L     +I F+  R     I+++  + S  LL T GL  GIDFKGG ++ +       
Sbjct: 9   NELYSAKTSIAFVGKRRIWYLIAVVIVLGSATLLATVGLTPGIDFKGGSEITITGLSSPS 68

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  L    +   S     G  +  V+      + +++ R+  +  +  T     ++
Sbjct: 69  ERPANEALSKSDLAASSSVTTMGSGSVRVQT-----NQLSKQRLDSLAGELATAYKTNAS 123

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             +   VGP  S ++ +K   G+++  I + + IW  F+ W  A+ A+  L  DI  T+G
Sbjct: 124 NVSATTVGPTWSSDVTKKAARGLVLFFIFVGLLIWAYFRTWKMAVAALLALCHDIVVTVG 183

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINE 767
            +AL G E     +  VLT++GYS+ D VVV+D++R+N + +   +  ++ +L + ++N+
Sbjct: 184 IYALSGFEVTPATIIGVLTILGYSLYDTVVVFDKIRENTEGFESQSRSTYAELANLAVNQ 243

Query: 768 TLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           T  RS+ TS+   + V  +      + G   +   A+ +  G++    SSIF+A P+L+ 
Sbjct: 244 TFIRSINTSVVGVLPVASLLFVGAFILGAGTLRDIALTLFIGMIAGTLSSIFLATPLLVD 303

Query: 823 IYDWRAKNA 831
           +     +  
Sbjct: 304 LRSREKRIK 312


>gi|161519923|ref|YP_001583350.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           multivorans ATCC 17616]
 gi|189353900|ref|YP_001949527.1| putative cation/multidrug efflux pump [Burkholderia multivorans
           ATCC 17616]
 gi|160343973|gb|ABX17058.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia multivorans ATCC 17616]
 gi|189337922|dbj|BAG46991.1| putative cation/multidrug efflux pump [Burkholderia multivorans
           ATCC 17616]
          Length = 1061

 Score =  194 bits (491), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 67/548 (12%), Positives = 152/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVLILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q       +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLAAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQTEE-------------EFGDIVVKTTPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLGFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGMSARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 RFNKVFHR 530



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTHGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+      G  +  +  + + FG+
Sbjct: 960  -LEHDGKTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 89/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 252 IVVKTTPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLIAVPVSIVGTFSLLLGFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGM 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           S R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 428 SARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 487 SLTLSPALSAILLK 500


>gi|157963871|ref|YP_001503905.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           pealeana ATCC 700345]
 gi|157848871|gb|ABV89370.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella pealeana ATCC 700345]
          Length = 1052

 Score =  194 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 70/687 (10%), Positives = 184/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L  +        + ++PS  P + +            V     
Sbjct: 8   RPIFAWVIAIIVMLAGVLSIV-----GLPVSQYPSIAPPSVV---------ISAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTMEDSVTQVIEQRMTGIDHLRYITSTSDSFGNAQITLTFNAEADPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + +   +  +      ++++            + +  +     D +       
Sbjct: 114 AMPLLPQEVQAQGVNVSKSSAGFLMVAAFVSQDGSLDKNDIADYVGSNIQDPLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L Q   T+  +       N        G            
Sbjct: 174 TIELFGAQ-YAMRIWLDPLKLTQYNLTSQDIISSIREQNAQVSAGQLGGAPSVAGQELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +    + F      +           
Sbjct: 233 TVSAQSRL-------------QTADQFKKIIIKADTSGAKVFLEDVARVELGAESYAVES 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T E        ++         +           S   
Sbjct: 280 FYNGKAAAGVGIQLATGANALATAEGVRAKINEMKPFFPDGMEVVYPYDTTPFVEKSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T A+L+  G ++   ++  +V
Sbjct: 340 VVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILAAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPVEATKKSMDQITGALVGIGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSIDINP 527
            G      R F+IT+  ++ +S+  AI +  A+   +++                 +   
Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVMVAIILTPALCATMLKPIAKGESHAKTGFFGWFNRKF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +A    R     +    +        +         + +G +    +   
Sbjct: 520 DALTSRYESSVAAMIKRTGRTMMVYLAITVAVGWIFMRMPTAFLPDEDQGILFTQAILPV 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  ++ LE +    ++ +  + +  F V      G+          +K       P
Sbjct: 580 NSTQQETKAVLERVTDFYLNEEGENVKSVFSVSGFSFAGNGQNMGIAFVGLKDWAERSEP 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
              +Q+       +   +    +   +
Sbjct: 640 GQDVQSVANRAMGMFMGMKEAFVFAFV 666



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 80/240 (33%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       +   +           +        +++A    +     ++ 
Sbjct: 255 TSGAKVFLEDVARVELGAESYAVESFYNGKAAAGVGIQLATGANALATAEGVRAKINEMK 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  ++ + + + + +++  + +   L     + +
Sbjct: 315 PFFPDGMEVVYPYDTTPFVEKSIEGVVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    A  G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPVEATK 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F+I +   + ++   +I +   +
Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVMVAIILTPAL 492



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 75/242 (30%), Gaps = 11/242 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +      V  ++   +        S Q G    + F G     ++    PG S    
Sbjct: 779  MQPEDLDSWYVRNDKGEMVPFSAFASGSWQYGSPRLERFGGLPAMNIQGGTAPGYSTGAA 838

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
                    K                          +  +   +S + + + +   ++ W 
Sbjct: 839  MDDIEAMAKKLPPGFGIEWNGLSYEERLSGN----QAPMLYALSIVVVFLVLAALYESWS 894

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
                 +  + L I   L      G+  ++     +LT +G +  + +++ +  ++    Y
Sbjct: 895  VPFAVVLVVPLGIIGALIAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF---Y 951

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                   +    ++   L   + TS+A  + V+P+A+    G     +    +  G++ +
Sbjct: 952  EKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGGMMSS 1011

Query: 809  AS 810
              
Sbjct: 1012 TF 1013


>gi|326570267|gb|EGE20312.1| preprotein translocase subunit SecF [Moraxella catarrhalis BC8]
          Length = 378

 Score =  194 bits (491), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 156/296 (52%), Gaps = 4/296 (1%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           LI +   I FM+     +  S+L  +  +  +   GLN+G+DF GG+   V   +PV+ +
Sbjct: 60  LIANQRIIPFMKLEKPMIVFSVLSILIGLIAIIVKGLNFGLDFTGGVSANVAYEQPVEQA 119

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   L      D   Q     +  LVRL  Q G +   +  L+ +   +      STI 
Sbjct: 120 QVIKALADNGFNDAVAQYLGTRQELLVRLPPQDGSAENLSASLDQI---LNFPNNPSTID 176

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +  I+G ++  E+    ++ + ++   MLIY+  RF++  ALGA+  L  D+   +G FA
Sbjct: 177 SISIIGSQLGNEIYLNSLLAMSVALGMMLIYVATRFQFKLALGAVLALFHDVIIVVGIFA 236

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           + G  F+LT +AAVL LIGYSVND +VVYDR+R+N +     ++ R ++D S+ ETL R+
Sbjct: 237 IMGWPFDLTVLAAVLALIGYSVNDTIVVYDRIRENFRR-VRGLTPRQVLDLSLTETLRRT 295

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + T    F+ V+ M   GG  +  F++ +  G++    SSI++A+ I L +   R 
Sbjct: 296 IMTVGTVFVVVVAMLFLGGDGLYWFSVALFIGLIAGTYSSIYVASSIPLMMGLSRE 351


>gi|254821449|ref|ZP_05226450.1| preprotein translocase subunit SecF [Mycobacterium intracellulare
           ATCC 13950]
          Length = 432

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 124/300 (41%), Gaps = 15/300 (5%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA---NRPVDLSVVRSNLES 600
             R    GIS      ++  +   G ++GIDF GG  + + A   +  V  S V+     
Sbjct: 49  GRRRLWFGISGAIVAVALLSILLRGFSFGIDFNGGTTVSMPANGTHGTVHTSQVQDVFRK 108

Query: 601 LQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               D       G                   +  +  + +    K  +  P     +  
Sbjct: 109 TLGNDAESVVVVGNGAAATVQIRSETLSNDQTTKLRNALFDAFGPKGPDGKPSKQAISDS 168

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V      ++  K +  +++    + +YI +R++ Y  L AI  +  D+  T G ++L G
Sbjct: 169 AVSETWGDQITMKALFALVVFLALVGVYITVRYERYMTLAAIAAMFFDLAVTAGVYSLVG 228

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSV 773
            E     V  +LT++G+S+ D V+V+D++ +N     +    +F +  + +IN+T  RS+
Sbjct: 229 FEVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHKPKRTFAEEANLAINQTFMRSI 288

Query: 774 YTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            TS+   + VL +      + G   +   A+    GI+V   SSIF A P+L+ + +   
Sbjct: 289 NTSLIGVLPVLALMVVAVWLLGVGTLKDLALVQLIGIIVGTYSSIFFATPLLVSMRERTE 348


>gi|197284043|ref|YP_002149915.1| inner membrane rnd family protein acrb [Proteus mirabilis HI4320]
 gi|227358086|ref|ZP_03842428.1| cation/multidrug efflux pump [Proteus mirabilis ATCC 29906]
 gi|194681530|emb|CAR40435.1| inner membrane rnd family protein acrb [Proteus mirabilis HI4320]
 gi|227161821|gb|EEI46853.1| cation/multidrug efflux pump [Proteus mirabilis ATCC 29906]
          Length = 1052

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 71/692 (10%), Positives = 183/692 (26%), Gaps = 43/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     +  + ++P+  P                V    +
Sbjct: 8   RPIFAWVIAIITMLAGLLALI-----KLPVAQYPTIAPPAI---------SISAVYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        ITL+F      +    +V   LQ 
Sbjct: 54  ATTVQNTVTQVIEQNMNGIDNMVYMSSTSDSAGMMNITLTFEAGTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++            + +  +     D +       
Sbjct: 114 AMPLLPQEVQQQGISVDKSSSSFLMVAGFISGDGSMSQDDIADYVGATIKDPLSRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L +   TT  +       NN       G            
Sbjct: 174 ETQLFGTQ-YAMRIWLDPDKLVKYNMTTLDVINAIKSQNNQVAAGQLGGTPPVPGQRLNV 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +        +        +           
Sbjct: 233 SIIAQTRL-------------NTPEQFADILMKVNQDGSQVKLKDLGIVEMGAENYSTIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T        A +          +           S   
Sbjct: 280 RFNGLPAAGIGIKLATGANALDTATAVRAALADMEPFFPSGLEVVYPYDTTPFVKISIFE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++  +V
Sbjct: 340 VVKTLVEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F++T+  ++++S+F A+ +  A+   +          ++       +   
Sbjct: 460 GGSTGAIYRQFSVTIVSAMVLSVFVALILTPALCATLLKPIPKGSHGVQTGFFGWFNRVF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D ++        + +   +L +  +I  +         + +G +   V    
Sbjct: 520 EKSSHHYTDSVSRTLRGTGRYLLIYVLLVAAMAIMFVRLPASFLPEEDQGVLLTMVQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  +  L  +     + +    +  F V      G          ++         
Sbjct: 580 GSTQEQTQDVLAQVNDYFNTKEKDVVKSVFTVSGFGFGGQGQNMGLAFVVLNDWDERKSD 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
              +        +   ++    +    I AI 
Sbjct: 640 QDKVPAIVGRANQALSQIKEAFVYSFNIPAIV 671



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 79/211 (37%), Gaps = 7/211 (3%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++L          T V   +            +       P +   +    +  ++ + +
Sbjct: 291 IKLATGANALDTATAVRAALADMEPFFPSGLEVVYPYDTTPFVKISIFE-VVKTLVEAIM 349

Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + + +++  + +   L     + + +  T    + FG   N   + A++  IG  V+D 
Sbjct: 350 LVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFAMVLAIGLLVDDA 409

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +     +    +S ++   KS+ +  G  V  ++      +PMA +GGS     
Sbjct: 410 IVVVENV--ERVMQEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFFGGSTGAIY 467

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F++ +   +V++   ++ +   +   +  
Sbjct: 468 RQFSVTIVSAMVLSVFVALILTPALCATLLK 498



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 82/244 (33%), Gaps = 8/244 (3%)

Query: 591  LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             S + ++ +    G    + ++G     ++    PG S     ++               
Sbjct: 801  SSFIDTSKDPWLYGSPRLERYNGLPAVQIQGSATPGQSSGDAMLMMEQLASKLPSGIGYE 860

Query: 651  IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                         +      + +I+  + +     +   W      +  + L +   L F
Sbjct: 861  WTGMSYQERLSGNQAPALYTISLIVVFLCLA---ALYESWSVPFSVMLVVPLGVIGALAF 917

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G+E ++     +LT IG S  + +++ +  +  M+         +    S+   L 
Sbjct: 918  TTLRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LVEATLDSVRMRLR 975

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + TS+A  + V+P+ +    G     S    +  G++ A S +I+      + I    
Sbjct: 976  PILMTSLAFMLGVIPLVLSNGAGSGAQNSVGTGVFGGMIAATSLAIYFVPIFFVVIRRRF 1035

Query: 828  AKNA 831
            AK  
Sbjct: 1036 AKKN 1039


>gi|300787169|ref|YP_003767460.1| preprotein translocase SecF subunit [Amycolatopsis mediterranei
           U32]
 gi|299796683|gb|ADJ47058.1| preprotein translocase SecF subunit [Amycolatopsis mediterranei
           U32]
          Length = 404

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 135/323 (41%), Gaps = 15/323 (4%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                      L     A   +  R           +  +  +   G N GI+F+GG Q+
Sbjct: 19  KPGKRESVFHRLYVGTGAFDVVGKRKRWYIFFAALVLVCLASMIFRGFNIGIEFEGGTQI 78

Query: 582 GVLANRP----VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + AN       +     S  ++L       Q         ++++    ++    ++ + 
Sbjct: 79  QMPANGIHGVITEDQAKESFQKALGHPAAETQKVGTGAASTIQIRTDTLNAADVAKLKQG 138

Query: 638 VKKKITEIV----PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + + +        P     +   V      E+ +K ++ + +  +A++I++ I F    A
Sbjct: 139 LFQDLGPKGTSGQPSVQAISDSAVSASWGGEISQKALIALAVFLVAVVIFLAIYFDLRMA 198

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LY 751
             A+ +L+ DI  T G ++L G E     V  +LT++G+S+ D VVV+D++R+N +  L 
Sbjct: 199 TAALVSLLHDILVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVVVFDKVRENTRGLLG 258

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIV 806
            T  ++ +  + ++N+TL RS  T+  A + +L + +      G   +   A+    G +
Sbjct: 259 LTRRTYAEAANLALNQTLMRSFNTAFIALLPILGLLIVGYVLLGSGTLQDLALVQLTGTL 318

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
           V   SS+ +A P+L+       K
Sbjct: 319 VGVLSSVALATPLLVDFKMRDPK 341


>gi|221200903|ref|ZP_03573944.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD2M]
 gi|221207098|ref|ZP_03580109.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD2]
 gi|221210232|ref|ZP_03583212.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD1]
 gi|221169188|gb|EEE01655.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD1]
 gi|221173172|gb|EEE05608.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD2]
 gi|221179475|gb|EEE11881.1| multidrug efflux pump BpeF [Burkholderia multivorans CGD2M]
          Length = 1061

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 67/548 (12%), Positives = 152/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVLILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q       +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLAAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQTEE-------------EFGDIVVKTTPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLGFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGMSARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 RFNKLFHR 530



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTHGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+      G  +  +  + + FG+
Sbjct: 960  -LEHDGKTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 89/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 252 IVVKTTPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLIAVPVSIVGTFSLLLGFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGM 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           S R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 428 SARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 487 SLTLSPALSAILLK 500


>gi|317487252|ref|ZP_07946047.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila
           wadsworthia 3_1_6]
 gi|316921442|gb|EFV42733.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bilophila
           wadsworthia 3_1_6]
          Length = 1044

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/684 (9%), Positives = 181/684 (26%), Gaps = 48/684 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +        +  ++++P   P               + +    
Sbjct: 8   RPVFAWVIAILIMMAGGISIF-----RLPVEQYPRIAPPV-------------VTITAKY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  L+      +   L    G+   +       Q  I L+F      +    +V  
Sbjct: 50  SGASAQTLEDTVAQVIEQKLNGIDGLLYINSTSDAAGQVSIRLTFDPDTNPDVAQMQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L  +  +  +  T   +  + +           A +    +    +D +   
Sbjct: 110 KLQLATSSLPEEVTRQGITVTKVADSFLQMYAFVSSDDSMSAADLCDFVGSTILDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    +PS+L     T + +       N        G + +RD  
Sbjct: 170 DGVGEVSLFGAP-YAMRIWLNPSKLLSYSLTPSDVINAVKAQNKQVSLGEVGGKPIRDGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                ++ + +++                +    +                 +       
Sbjct: 229 QMNVTIKAQKQLT-------------SVPEFERILLRVNPDGSAVRLRDVARVELGQESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +   T          +R         +     V     
Sbjct: 276 TSSARYNGKPAAGVGIKLASDANALNTSNAVAAFIEDMRPYFPHGVEVVSPYDTVPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+++ +   +  ++   ++ + ++ T  +++  G ++   ++
Sbjct: 336 SIIEVVKTLLEAIVLVFAVIYLFLQNFRATIIPSLAVPVVLLGTFGVMAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +             +      +    +           V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVARVMEEDGLPPREATIKTMGQITGALIGVAAVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + FFGG      R F++T+  ++++S+  A+ +   +            ++      + +
Sbjct: 456 MAFFGGTVGAIYRQFSLTIVSAMILSVVVAVVLTPVLCSTFLKPGHMASQHGFFGWFNRS 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +           V    +       L          + +G + + +   
Sbjct: 516 FDRATTAYRGAVGRIIKVGGRMMVIYLAMLVCAGWILWRMPTSFLPNEDQGILTVEIQLG 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +     +E ++   +  +  +     L   +   G   +  R    ++       
Sbjct: 576 PGSTETETLKIVEQVERYFLENEKENVHGMMLTLGRASGGKGQSTARGNIRLRDWSERKD 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
           P    Q       +    +I   +
Sbjct: 636 PERRAQAIIDRANQAFSSIINARV 659



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 75/192 (39%), Gaps = 16/192 (8%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV----GVIISAIAMLIY 683
           S A             E +        E+V P  +   I+  I+     ++ + + +   
Sbjct: 295 SDANALNTSNAVAAFIEDMRPYFPHGVEVVSPYDTVPFIKISIIEVVKTLLEAIVLVFAV 354

Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           I++  + +   +     + + +  T G  A FG   N   +  ++  IG  V+D +VV +
Sbjct: 355 IYLFLQNFRATIIPSLAVPVVLLGTFGVMAAFGFSINTLTMFGMVLAIGLLVDDAIVVVE 414

Query: 743 ---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGS 796
              R+ +        +  R+   K++ +  G  +  +       +PMA +G   G++   
Sbjct: 415 NVARVMEE-----DGLPPREATIKTMGQITGALIGVAAVLSAVFVPMAFFGGTVGAIYRQ 469

Query: 797 FAIPMAFGIVVA 808
           F++ +   ++++
Sbjct: 470 FSLTIVSAMILS 481



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 69/214 (32%), Gaps = 9/214 (4%)

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             G +  + ++G     ++ +   G S     +                            
Sbjct: 806  YGPMQLERYNGVSAVRIQGRAAAGMSSGTAMLEMERLMGELPEGIGYQWTGMSFQERLSG 865

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             +      + +++  + +     +   W   L  I  + L +   L   +  G+  ++  
Sbjct: 866  SQAPFLYALSILVVFLCLA---ALYESWSIPLSVILVVPLGVLGALVATSARGLSNDVYF 922

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               +L  IG +  + +++ +  R+   L+    S  D   ++    L   + TS+A  I 
Sbjct: 923  QIGLLATIGLAAKNAILIVEFARE---LFQQGASLADAAMEAARLRLRPILMTSLAFLIG 979

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
            VLP+A+    G     +    +  G   A    I
Sbjct: 980  VLPLAISTGAGSGSQNAIGTGVMGGTFAATVLGI 1013


>gi|206564391|ref|YP_002235154.1| multidrug efflux system transporter protein CeoB [Burkholderia
           cenocepacia J2315]
 gi|198040431|emb|CAR56416.1| multidrug efflux system transporter protein CeoB [Burkholderia
           cenocepacia J2315]
          Length = 1066

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   +   +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDIARIQLDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  L+   ++ +++I T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLAFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 56.2 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+      G  +  +  + + FG+
Sbjct: 960  -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 89/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 252 IVVKTTPDGGVTHLRDIARIQLDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  +L 
Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLIAVPVSIIGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGM 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           + R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 428 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 487 SLTLSPALSAILLK 500


>gi|118578772|ref|YP_900022.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pelobacter
           propionicus DSM 2379]
 gi|118501482|gb|ABK97964.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pelobacter propionicus DSM 2379]
          Length = 1054

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 72/689 (10%), Positives = 172/689 (24%), Gaps = 47/689 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L        Q  + ++P+  P          +   +       
Sbjct: 8   RPIFAWVIAIIIMLAGILAI-----KQLPVAQYPAIAPP---------QVSINATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        +     +  ITL+F           +V   LQ 
Sbjct: 54  AKTIEDTVTQVIEQKMNGIDNLTYMSSTSDSSGSVTITLTFNAGTDPNIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +  T   +  +++     +       + S       +D +       
Sbjct: 114 ATPLLPQAVQQQGIKVTKSTKNFLMVVGFVSEDGSMTRFDLSDYAAANVLDIVSRLPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     T   +       N        G            
Sbjct: 174 ETQMFGSQ-YAMRIWLDPHKLHNYNLTPNDVKSAIKAQNVQVSAGQLGGNPSPQGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                             
Sbjct: 233 TITAQTLL-------------KTPEEFGAIILRTNSDGSSVHLRDVARSELGSEDYSSMA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +      A L          +           S   
Sbjct: 280 RFNGKPAAGMAIKLATDANALDTAKVVKDKLAELSKFFPSGMKVVYAYDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++F+ +   +  L+   ++ + ++ T  +LS  G ++   ++   V
Sbjct: 340 VVKTLGEAVVLVFLIMFLFMQNIRATLIPTIAVPVVLLGTFGVLSACGFSINTLTMFATV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMTEEGLSPKEATRKSMRQITGALVGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSI 523
            G      R F+IT+  ++++S+  A+++  A+   +                    +  
Sbjct: 460 SGSTGVIYRQFSITIVSAMVLSVLVAMTLTPALCATLLKPVEKGHVAADSGWFSGFFRWF 519

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + +   F +   + V    + +   +  L         + +G +   V
Sbjct: 520 NAWFDRGREKYEEMVGRSFGKPVRYLVVYGAIVTAMVLFFLRMPTAFLPDEDQGMLFSMV 579

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L+ ++   +  Q    E  F V      G+          +K    
Sbjct: 580 QLPVGATQERTLEVLKDVENHFLVDQKEAVESLFTVAGFSFAGNGQNMGLAFVKLKDWEL 639

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              P   ++                    
Sbjct: 640 RQRPDLRVKAVAGKAMAAFSGFRDAQAYA 668



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V  +    +      +        +        +++   +V++    ++++  P 
Sbjct: 260 VHLRDVARSELGSEDYSSMARFNGKPAAGMAIKLATDANALDTAKVVKDKLAELSKFFPS 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVVYAYDTTPFVKISIEEVVKTLGEAVVLVFLIMFLFMQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  +  G   N   + A +  IG  V+D +VV + +     +    +S ++   KS+ +
Sbjct: 380 FGVLSACGFSINTLTMFATVLAIGLLVDDAIVVVENV--ERIMTEEGLSPKEATRKSMRQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA + GS       F+I +   +V++   ++ +   +   + 
Sbjct: 438 ITGALVGIALVLSAVFVPMAFFSGSTGVIYRQFSITIVSAMVLSVLVAMTLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              +  Q  PG S            +                  +   +      + +I+ 
Sbjct: 827  MEILGQPAPGKSTGVAMAEMEKMAEKLPAGIGFEWTGLSYQERQAGAQAPALYAISLIVV 886

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             + +     +   W      I  L L I   +      G+  ++     +LT +G S  +
Sbjct: 887  FLCVA---ALYESWTIPFVNILMLPLGIVGAVMATTARGLSNDIYLQIGLLTTMGLSTKN 943

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++   +++ M      +   +    ++   L   + TS+A F   LP+A+    G   
Sbjct: 944  AILIIQFIKEQMHQ---GLGLTEATRAAVKTRLRPVIMTSLAFFFGTLPLALTKGAGAGA 1000

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +    +  G++ A    +       + +     +  
Sbjct: 1001 QNAIGTAVTGGMLSATFIDLIFIPFFFVLVSRLFGRKN 1038


>gi|229590668|ref|YP_002872787.1| putative multidrug resistance protein [Pseudomonas fluorescens
           SBW25]
 gi|229362534|emb|CAY49441.1| putative multidrug resistance protein [Pseudomonas fluorescens
           SBW25]
          Length = 1036

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 76/681 (11%), Positives = 184/681 (27%), Gaps = 41/681 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L      L +  + ++P   P               + +    
Sbjct: 8   RPNFAWVIALFIVLAGALT-----LGRLPVSQYPDVAPP-------------QISVSASY 49

Query: 63  DDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                      +    +E  + L        +        T++F      +     V   
Sbjct: 50  PGASAQIINLNVTSLLEEELNGLPDLLYYESTSANGSADTTVTFKPGTDPDRAQIDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           LQ V  +L     +  L     +   +++   +       ++  +    R   ++I    
Sbjct: 110 LQRVVGRLPQAVIEQGLKVEQVRANFLMIYALSYTDEQQDSVGLADFAARAVNNEIRRVA 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP+ L     + A +S      N        G R       
Sbjct: 170 GVGRVEMY-TAERAMRIWVDPAELVGYGLSMADVSKAIAAQNVQVPAGSMGERPGPVDQQ 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  + ++  +                   +                 +        
Sbjct: 229 ITATVMVQGQLESVE-------------AFGNIVLRANDDGASVRIHDVARVELGRQDYR 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L    +           +   T +        L +         V          +
Sbjct: 276 FDARLNGKPVAAMSVQLAPGGNALQTAQAVKARLEHLSSTLPGNMRLSVPYDTAPFVQAA 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+++ +   ++ L+    + + +  TLA++ +LG ++ + ++ 
Sbjct: 336 IKQVVYTLIEAMVLVFLVMWLFLQKLRYTLIPAVVVPVCLSGTLAVMGVLGFSINMMTLF 395

Query: 419 GIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +    +++  S   +      +    I    +      + L
Sbjct: 396 GMVLAIGMLVDDAIVVVESVERLISQERLSPKDATRKAMRQISGAIVGITLVLATVFLPL 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMM-IFIIRYKKMKSIDINPLSRFFL 533
            F GG      + FA+ + +SIL S F A+++  A+    +  +   + +         L
Sbjct: 456 AFMGGSVGVIYQQFALVLSVSILFSGFLALTLTPALCAALLKPFDPTRRVPGFNRHFDRL 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 +     R     + +   + ++ +L  H L             V   +    + 
Sbjct: 516 TAHYERVAGTWVRRGTRSVCLYLLLLAVLVLAYHRLPSSFIPSEDQGYTVTDIQLPPAAS 575

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                 ++   +            L  L +      A   +  +  K  +        + 
Sbjct: 576 AARTEVTVNAWEQYALAQPATHQVLSILGFSFSGEGANAALSYISLKDWSVRGSDQASRA 635

Query: 654 TEIVGPKISRELIRKGIVGVI 674
                 +   ++    +   +
Sbjct: 636 VAQRATRAFEDVSDGSVFSTV 656



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 96/249 (38%), Gaps = 6/249 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       Q      +        +       G+++   + ++   + ++  +P 
Sbjct: 259 VRIHDVARVELGRQDYRFDARLNGKPVAAMSVQLAPGGNALQTAQAVKARLEHLSSTLPG 318

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
           +   +         +  I++ +  +I + + + + +W+   K  + L     + + ++ T
Sbjct: 319 NMRLSVPYDTAPFVQAAIKQVVYTLIEAMVLVFLVMWLFLQKLRYTLIPAVVVPVCLSGT 378

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    + G   N+  +  ++  IG  V+D +VV + +     +    +S +D   K++ +
Sbjct: 379 LAVMGVLGFSINMMTLFGMVLAIGMLVDDAIVVVESV--ERLISQERLSPKDATRKAMRQ 436

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A  GGSV      FA+ ++  I+ +   ++ +   +   + 
Sbjct: 437 ISGAIVGITLVLATVFLPLAFMGGSVGVIYQQFALVLSVSILFSGFLALTLTPALCAALL 496

Query: 825 DWRAKNARI 833
                  R+
Sbjct: 497 KPFDPTRRV 505



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/144 (11%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + + +  ++    + G+  ++     ++T+IG S  + +++ +  +   
Sbjct: 882  SWAIPFAVLLIVPVGVLGSVAAVTVMGMPNDVYFKVGLVTIIGLSAKNAILIVEFAK--- 938

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    S  +   ++        + TS+A  + V+P+A+    G +   +    +  G+
Sbjct: 939  ALHAQGASLANAAIQAARLRFRPIIMTSLAFILGVVPLALATGPGAASQQAIGTGVIGGM 998

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            + A    +     + + +     +
Sbjct: 999  LAATVLGVLWVPVLFVKVMSVSQR 1022


>gi|149177810|ref|ZP_01856409.1| protein-export membrane protein secD [Planctomyces maris DSM 8797]
 gi|148843300|gb|EDL57664.1| protein-export membrane protein secD [Planctomyces maris DSM 8797]
          Length = 991

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 119/256 (46%), Gaps = 18/256 (7%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D S     +   Q+  ++    +       ++  Q G  + +  +   +      + 
Sbjct: 718 TNADGSDKYDRIPEFQLQGVADSKEEEADKRFKKMTMQAGPDLLEDDLKTALAAMQDVMA 777

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             + +         ++ E+    ++ ++IS IA++ YIW RF +  F L A+  L+ D+ 
Sbjct: 778 TTAILDEVNSFDSSVASEMQESALLAMLISLIAIVAYIWFRFQRITFGLAAVAALVHDVL 837

Query: 706 KTLG---------------FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             LG                  L   + NL  +AA LT++GYS+ND +VV+DR+R+    
Sbjct: 838 VVLGMVALGAYLSDTALGPILGLNDFKINLPMIAAFLTIVGYSLNDTIVVFDRIREVRGK 897

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                +   +++ S+N+TL R++ TS+   I VL +   GG  I  FA  +  G++V   
Sbjct: 898 NPALTT--SMVNDSLNQTLSRTLLTSITTLIVVLILYAIGGEGIHGFAYCLVLGVIVGTY 955

Query: 811 SSIFIAAPILLFIYDW 826
           SSIFIA+P+L+++ + 
Sbjct: 956 SSIFIASPVLIWLMNR 971



 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 140/619 (22%), Positives = 251/619 (40%), Gaps = 68/619 (10%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD----EDDFV 66
             ++    ++ A P     +    +  A     I LG+DL GGS++V EVD    E +  
Sbjct: 60  IGLVLFTAVIAATPFVWQVTHGHDWRDA-----IRLGIDLAGGSNMVFEVDESQSEKELS 114

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           N  +      +   +   G    ++R   QN+I +    +  ++                
Sbjct: 115 NEVMDQMVGAIGRRINPSGTEEVTVRKVGQNRIEVIVPGADSED---------------- 158

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                    +         +   +  I        + + E+ R     +   E    R  
Sbjct: 159 ---------VQRIKSLITRLGSLEFAIVANRRD-RDHADEVAR----ALENPEKKDIRDK 204

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
             R++      +   +         ++    V   +  +G    +    + D        
Sbjct: 205 EGRVVASWREVKGDDKYE----GVDQIVARPVTREDGTQGEEVLILIEPNEDR------- 253

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN-----IGKPLAVVLDG 300
              ++G +L    +    +   P V   F+  G   F  +T  N       +    VL  
Sbjct: 254 --RVTGKYLVR-ASQTTDQNGGPAVRFVFNAKGGSLFGTLTSKNRPSKDGFERHLAVLLD 310

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL--NIVEERNVGADLGS 358
             + +    +   S +  ISG FT +    L  +L AG+L + L    V E ++   LGS
Sbjct: 311 GKVQSAPSIRDTISTEGIISGRFTQKEVNELLNVLNAGALEVPLKPEPVSEFSISPLLGS 370

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           D   KG  AI+     +++FM++ Y   G+VA+  + LN++L +  +S + AT TLP +A
Sbjct: 371 DVQEKGKQAILIAACAVIIFMLIYYRFAGVVANICLTLNLLLVMGCMSFIDATFTLPGLA 430

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+VL IG+AVD+N+L+ ERIREE  +  S+  +++ GFSRA++TI D+N+T LI  VVL+
Sbjct: 431 GLVLTIGMAVDANVLIFERIREEKARGSSLRMAINNGFSRAFTTIVDANLTTLIVAVVLY 490

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
             G   VRGFA+T+ + I++SMFTA+ + R       R + +  + +        I    
Sbjct: 491 IIGTDQVRGFAVTLFIGIVMSMFTALYVGRLFFDIFERKRWITDLKM------MSIVGTT 544

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTH-GLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
            + F+  +      S    +  + ++ T    N  IDF GG  +        ++  VR  
Sbjct: 545 NLDFIGKKMIAAFFSGALIVIGLIVVVTRGQENLDIDFTGGTMVTFEFEDKQEIDDVRGL 604

Query: 598 LESLQIGDISFQNFDGEKN 616
           L+      ++ +      +
Sbjct: 605 LQGPFGNSLTIEQLQLSND 623



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 96/246 (39%), Gaps = 4/246 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            + +           +L  L  G +       +      +            +L ++   
Sbjct: 289 TLTSKNRPSKDGFERHLAVLLDGKVQSAPSIRDTISTEGIISGRFTQKEVNELLNVLNAG 348

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             E+       +   + P +  ++  KG   ++I+A A++I++ I +++   + A   L 
Sbjct: 349 ALEVPLKPEPVSEFSISPLLGSDVQEKGKQAILIAACAVIIFMLIYYRF-AGVVANICLT 407

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   +G  +     F L  +A ++  IG +V+  V++++R+R+         S R  I
Sbjct: 408 LNLLLVMGCMSFIDATFTLPGLAGLVLTIGMAVDANVLIFERIREE---KARGSSLRMAI 464

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +   +      V  ++   I  + + + G   +  FA+ +  GIV++  +++++      
Sbjct: 465 NNGFSRAFTTIVDANLTTLIVAVVLYIIGTDQVRGFAVTLFIGIVMSMFTALYVGRLFFD 524

Query: 822 FIYDWR 827
                R
Sbjct: 525 IFERKR 530


>gi|33603251|ref|NP_890811.1| hypothetical protein BB4276 [Bordetella bronchiseptica RB50]
 gi|33577375|emb|CAE34640.1| probable membrane protein [Bordetella bronchiseptica RB50]
          Length = 1028

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 158/533 (29%), Gaps = 39/533 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  +I  IGL+        +  +  +P                      +  
Sbjct: 9   RRPVFASVLSLIIVLIGLIS-----YTRLSVREYPKIDEPIV---------SVDTTYKGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++   +     R  ++ I + F+ SR  +  A +V   +  
Sbjct: 55  SPEVIESQVTKPLEDQLAGIEGVDVMTSRSRSERSLINIKFSLSRDPDAAAAEVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  + ++         I+            AI+ S  I R    ++ +     
Sbjct: 115 ARRFLPDEIDEPIIGKVEADSQPIIYIAVES--GSYSAIQTSDYINRYIKTRLSVLPGAA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    D  +L     T   +       N          R    S  +  
Sbjct: 173 EVRVFGERLPSMRIYVDRDKLAAYGLTVQDVEAALRSQNVEIPAGRIESRAREFSVVSST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                      D+    +            +    A      
Sbjct: 233 DLQTPAQFE--------------------DVVVANVKGYPVRLRDVAKVEIGAANDRVLS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + ++  +     +        L           +   +      S   
Sbjct: 273 RYNGRSAINIGLTRQSTANPLELSKAVRAEIVQLNQSLPAGMKLNIAYDSSVFIERSIDS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F  +   +  ++   +I ++++   AL+ L G ++   ++  +V
Sbjct: 333 VFKTIGEAIILVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G       +    +T +     L F  
Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGMPRKQAAFQGSREIGFAVVAMTLTLVTVYAPLAFAT 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           G   R    FA+ +  ++L+S F A+++   M   ++R++   +   N +  +
Sbjct: 453 GRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQHSHNRWYNLIEGW 505



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 76/216 (35%), Gaps = 7/216 (3%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +    + +  ++ +     ++ + +P     N            I      +  + I +
Sbjct: 285 TRQSTANPLELSKAVRAEIVQLNQSLPAGMKLNIAYDSSVFIERSIDSVFKTIGEAIILV 344

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ++ I+   +    ++  I T+ + +        LFG   N   + A++  IG  V+D +V
Sbjct: 345 VLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMVLAIGLVVDDAIV 404

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---S 796
           V + +    +     +  +    +   E     V  ++       P+A   G        
Sbjct: 405 VLENI---FRHIEEGMPRKQAAFQGSREIGFAVVAMTLTLVTVYAPLAFATGRTGRLFIE 461

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           FA+ +A  ++V+   ++ +   +   +   +  + R
Sbjct: 462 FALALAGAVLVSGFVALTLTPMMCSVLLRHQHSHNR 497



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            G + ++ +     IY+ +      W      + ++ L +T  L    L G   ++ +  
Sbjct: 845 SGSIYLVFAMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQI 904

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++TL+G      +++ +      +L     +  + + ++    L   + T+ A  +  +
Sbjct: 905 GLITLVGLITKHGILIVEFAN---QLRDQGKAMHEAVVEASVLRLRPILMTTGAMVLGTV 961

Query: 785 PMAVWGGS 792
           P+A+  G+
Sbjct: 962 PLALAQGA 969


>gi|117922476|ref|YP_871668.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. ANA-3]
 gi|117614808|gb|ABK50262.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. ANA-3]
          Length = 1044

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 70/574 (12%), Positives = 154/574 (26%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++PS  P               +V+  + 
Sbjct: 8   RPIFAWVIALIIMLAGVLSI-----RSLPVSQYPSIAPPT-------------VVISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       I   S       ITL+F      +    +V  
Sbjct: 50  PGASAKIVEDSVTQVIEQRMKGIDHLRYIASTSDSFGNASITLTFNAEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQG  + L  + +   +         +++             + +  +     D +   
Sbjct: 110 KLQGAMTLLPQEVQSQGVNVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANIQDPMSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L Q   T+  +       N        G        
Sbjct: 170 PGVGEIQIFGAQ-YAMRIWLDPLKLTQYNLTSLDVVSAIRAQNAQVSAGQLGGTPSLPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +      F      +       
Sbjct: 229 ELNATVSAQSRL-------------QTPEQFRKIIIKSDTSGANVFLGDVARVELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +      +          +   T E        LR         +           
Sbjct: 276 AVESLYNGKPASGIAIKLATGANALDTAEAVRAKVEELRPFFPAGLDVVYPYDTTPFVEK 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSATGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      R F+IT+  ++ +S+  A+ +  A+         +K +          
Sbjct: 456 MAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPLKKGHGHIETG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F R               S  ++  +
Sbjct: 511 FFGWFNRGFDRLTNRYESSVAGIIKRSFRVMMIY 544



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 83/250 (33%), Gaps = 6/250 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       +   +         + +        +++     +    +++ 
Sbjct: 255 TSGANVFLGDVARVELGSESYAVESLYNGKPASGIAIKLATGANALDTAEAVRAKVEELR 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  ++ + + + + +++  + +   L     + +
Sbjct: 315 PFFPAGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    +  G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPLEATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F+I +   + ++   ++ +   +
Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPAL 492

Query: 820 LLFIYDWRAK 829
              +     K
Sbjct: 493 CATMLKPLKK 502



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 75/261 (28%), Gaps = 11/261 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +       V  S   +         +   N     N           
Sbjct: 774  QYRMQPEDLDTWYVRNNKGDMVPFSAFATGAWEYGSPRLERFNGLPAMNIQGATAPGFST 833

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + +MVK+            + E              +  + I  +  L+   + 
Sbjct: 834  GAAMNIMEDMVKQLPPGFGIEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 888

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 889  ESWSVPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 948

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 949  ---YEKGAGLIEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++ +    IF      + +  
Sbjct: 1006 MMSSTFLGIFFVPLFFVIVER 1026


>gi|327539857|gb|EGF26460.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopirellula baltica WH47]
          Length = 1052

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 68/544 (12%), Positives = 163/544 (29%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G +           + ++PS  P   +                  
Sbjct: 10  RPIFASVLSFVIVLVGGI-----VYFTLPVSQYPSVAPPTVL---------VRASYPGAT 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + +        S       ++T++F      ++    V   +  
Sbjct: 56  PEVIADTVATPIEQEMNGVDDMLYMESSSSSDGTMQLTVTFKLGTDLDDAQVLVQNRVAI 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    ++  + TT +    +++   N        +  S     +  D +   +   
Sbjct: 116 AESRLPEQVRQIGVTTTKQIPDMLMVVHLNSPDDSRDQLYISNYAFLRVRDALMRLDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +      +    D  ++  +  T  ++       N      + G     ++   Q 
Sbjct: 176 EIRIAGGNEYAMRIWLDIEKMTHVDLTAGEVVDAIQAQNIQVAAGVIGQPPTDETGDFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +              +  +    I       R         I           
Sbjct: 236 NVTTQGRL-------------IREDEFGDIIVKRGEDGRITRLRDVARIELGAQDYSRLS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +   +   +   T      + + +           +          S + 
Sbjct: 283 YLDGKSAIAVLVYQRPGTNAVDTAAEVKRVMSEMSEEFPQGIGYEIAYNPTDYVEDSIAE 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I    V++ +F+ +   +  ++   +I +++I T A++  LG TL   S+ G+V
Sbjct: 343 VFETLFITTIFVVLTVFLFLHGWRPTIIPVIAIPISLIGTFAVMQFLGVTLNTLSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +     +  +   +         S +  + +  +   V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERLIAEGMTAREATHKAMDEVGSALIATTLVLIAVFVPTVFVP 462

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S  IS F ++++  A+   ++R K      I     F       
Sbjct: 463 GISGQFYQQFALTISISTAISTFVSLTLSPALCALLLRPKNAPKNRIGKAIDFLFGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 LFNR 526



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 78/216 (36%), Gaps = 10/216 (4%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                 +    RV+  + ++  + +      N          E+     +  I   + + 
Sbjct: 300 TNAVDTAAEVKRVMSEMSEEFPQGIGYEIAYNPTDYVEDSIAEVFETLFITTIFVVLTVF 359

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++     W   +  +  + + +  T       G+  N  ++  ++  IG  V+D +VV 
Sbjct: 360 LFL---HGWRPTIIPVIAIPISLIGTFAVMQFLGVTLNTLSLFGLVLAIGIVVDDAIVVV 416

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFA 798
           + +    +L    ++ R+   K+++E     + T++      +P        G     FA
Sbjct: 417 ENV---ERLIAEGMTAREATHKAMDEVGSALIATTLVLIAVFVPTVFVPGISGQFYQQFA 473

Query: 799 IPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
           + ++    ++   S+ ++  +  L +    A   RI
Sbjct: 474 LTISISTAISTFVSLTLSPALCALLLRPKNAPKNRI 509



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/213 (10%), Positives = 63/213 (29%), Gaps = 9/213 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                   +      +E +  +                  +    ++    + V+   +A+
Sbjct: 837  TTVPGFSTGQSLSTMEQLADQNLPPGFGYEWTEIAFQERQAGNTIVFLFPLAVLFVFLAL 896

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
                     W   L  I  + L +   L      G++ N+      + LIG +  + +++
Sbjct: 897  S---AQYESWLLPLAIILIVPLCLLFALSGVWFRGMDNNVLTQIGFIVLIGLACKNAILI 953

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +  +             D    +    L   + T+ +  + V+P+ V    G  +    
Sbjct: 954  VEFAKAEEDAGKNRF---DAAIAACRLRLRPILMTAFSFILGVVPLLVATGAGFEMRRVL 1010

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               +  G++      +F+     + +  +  K 
Sbjct: 1011 GTAVFAGMLGVTVFGLFLTPVFYVMLRRFAKKK 1043


>gi|290961825|ref|YP_003493007.1| protein-export membrane protein [Streptomyces scabiei 87.22]
 gi|260651351|emb|CBG74473.1| protein-export membrane protein [Streptomyces scabiei 87.22]
          Length = 368

 Score =  193 bits (490), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 145/309 (46%), Gaps = 11/309 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    +   F+  R    G+SIL +I +I  L   GL+ GI+F+GG          + +
Sbjct: 10  RLHRGEVGYDFVGHRKIWYGVSILITIAAIAGLGIRGLSMGIEFQGGAVFTTP-KTSISV 68

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +      ES    D   Q         +R+Q    ++    +V   +   +         
Sbjct: 69  AQAEKYAESASGHDAIVQKLGTGSEGSLRIQISGIETAQADKVSAQLADDM---NMKPED 125

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              E+VGP    ++  K   G++I  + ++IY+ I F+W  A+ A   LI DIT T+G +
Sbjct: 126 VAGELVGPSWGDQIASKAWQGLVIFLVLVVIYLAIAFEWRMAIAAFVALIHDITITIGIY 185

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           AL G E     V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ ++SIN TL
Sbjct: 186 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDITKQTRWTYAEIANRSINSTL 245

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ T++ A + V  +   GG V     +   ++ +  G+   A SSIFIA P++  + 
Sbjct: 246 VRSINTTVVALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLK 305

Query: 825 DWRAKNARI 833
           +   +   +
Sbjct: 306 EREPQLKAL 314


>gi|254718487|ref|ZP_05180298.1| Acriflavin resistance protein [Brucella sp. 83/13]
 gi|265983456|ref|ZP_06096191.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. 83/13]
 gi|306838294|ref|ZP_07471140.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. NF
           2653]
 gi|264662048|gb|EEZ32309.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. 83/13]
 gi|306406585|gb|EFM62818.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. NF
           2653]
          Length = 1051

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 69/565 (12%), Positives = 158/565 (27%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIILVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVNKRSTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +       N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRIWLRPDKLTQYNLTPSDVFAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVIHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E+I   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVIHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 63/167 (37%), Gaps = 7/167 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G   +I   I + + +  ++ +W   L  IT +   I   L    L G+  ++     +
Sbjct: 869  TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGL 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG +  + +++ +     +    +  S  +    +        V TS+A  + V+P+
Sbjct: 929  VTLIGLAAKNAILIVEFA---VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPL 985

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            AV    G +   S    +  G++ A   + F        I     K 
Sbjct: 986  AVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLNQASENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLECFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|323143184|ref|ZP_08077880.1| putative ATP synthase F0, A subunit [Succinatimonas hippei YIT
           12066]
 gi|322417025|gb|EFY07663.1| putative ATP synthase F0, A subunit [Succinatimonas hippei YIT
           12066]
          Length = 1095

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 67/529 (12%), Positives = 160/529 (30%), Gaps = 41/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL   L        + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIVIMLAGLFAVL-----TLPISQYPTIAPP-------------SVSIRSSY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S     + IT++F      +    +V  
Sbjct: 50  PGADATTVERSVTQIIEQNMTGLDGYMYMSATSDSYGNSDITITFEPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S+L    + N +  T      +++        I    + S  I     + +   
Sbjct: 110 KLQQTQSQLPETVQSNGVDVTKSTNAFLMVVGLTAIDGIHDNTDLSDYIYANIREPMARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     +        +    DP +L  L  T  +++      N        G        
Sbjct: 170 QGVGDLMVFGS-EYAMRIWLDPEKLNNLGVTVTEVTTAITAQNAQVTYGSLGGTPAVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +  +  +  +              +    +        +        I       
Sbjct: 229 QYAYTITGQSRLQNVE-------------QFENILIRVNQDGSKIHLKDIARIELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +    L   L                      
Sbjct: 276 QVRGSYNHLPSSGIAIRLSSGANALDTAKRVKTLINDLSQYFPEWIEVNYPYDTTDFINI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV+I++++ +   +  L+   ++ + ++ T A++S+ G ++   ++
Sbjct: 336 SINEVFHTLIEAIILVVIIMYVFLQNIRATLIPTITVPVVLLGTFAIMSVFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +N     + +    +    +    +      + 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERIIHEENLPPKEATERSMDQITGALIGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   I++ K  ++
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMTLSVLIALILTPALCATILQGKDHRN 504



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 85/207 (41%), Gaps = 7/207 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
              + ++ +   +++  P     N            I +    +I + I ++I +++  +
Sbjct: 301 DTAKRVKTLINDLSQYFPEWIEVNYPYDTTDFINISINEVFHTLIEAIILVVIIMYVFLQ 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T    ++FG   N   +  ++  IG  V+D +VV + +    
Sbjct: 361 NIRATLIPTITVPVVLLGTFAIMSVFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            ++  ++  ++  ++S+++  G  +  ++      +PMA +GGS       F+I +   +
Sbjct: 419 IIHEENLPPKEATERSMDQITGALIGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAM 478

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNA 831
            ++   ++ +   +    +     +NA
Sbjct: 479 TLSVLIALILTPALCATILQGKDHRNA 505



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 76/246 (30%), Gaps = 20/246 (8%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++ E         +        +         +      +E +  ++       +     
Sbjct: 821  ASTEWTFGSPRLERYNGVGAMNIQGAPAPGVSTGEAMNEMERIAAEVLPPGYSISWTGVS 880

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                   ++      V +++  + +     +   W         ++L +       A   
Sbjct: 881  YQERLSGQQAPMLYAVSILVVFLCLA---ALYESWSIPFA--VMMVLPLGIIGAVLAALI 935

Query: 715  --------GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                     +  ++     +LT +G S  + +++ +  ++   LY       + + ++  
Sbjct: 936  TQYVPVRTVLTNDVYFQVGLLTTVGLSAKNAILIVEFAKE---LYDKGARLTEAVIEAAK 992

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + TS A  + VLP+AV    G +      I +  G++ A   +IF      + I
Sbjct: 993  IRLRPILMTSAAFILGVLPLAVSSGAGAAGRNEIGICVIGGMLSATVLAIFFVPVFFVLI 1052

Query: 824  YDWRAK 829
              +  K
Sbjct: 1053 MRYFTK 1058


>gi|284991596|ref|YP_003410150.1| protein-export membrane protein SecF [Geodermatophilus obscurus DSM
           43160]
 gi|284064841|gb|ADB75779.1| protein-export membrane protein SecF [Geodermatophilus obscurus DSM
           43160]
          Length = 453

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 135/314 (42%), Gaps = 14/314 (4%)

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +           L      +  +        I+ +  +  I  +   G N+GIDF GG  
Sbjct: 41  RRPRHRGSLSHRLYNGEAGLDVVGRSRLIYRITAVVVLLCIAAMVFRGFNFGIDFAGGNS 100

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L        +              +++     G    L+R      ++            
Sbjct: 101 L--RLPGGAEQLAEVEEAAEEAGAEVASAQVVGGNALLLRTGALDNETERAVVDAVAAAA 158

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +T         + E V P+  +++ R+ +V + +  +A+++++ +RF+   A+GAI  L
Sbjct: 159 GVTPS-----QVSPEAVSPEWGQDITRQALVALAVFLVAVVLFLAVRFQPKMAIGAIAAL 213

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFR 758
           + DI  T G +AL G E   + V   LT++G+S+ D VVV+D++ +N+K       +++ 
Sbjct: 214 VHDIVVTAGVYALVGFEVTPSTVIGFLTILGFSLYDTVVVFDKVDENVKDLDRSARMTWG 273

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSI 813
           +  + ++N+TL RS+ TS+ A + V  +        G   +   A+ +  G+   A SSI
Sbjct: 274 EAANLAVNQTLMRSINTSVIALLPVAGLLFVGAGLLGVGTLKDLALVLFVGLAAGAYSSI 333

Query: 814 FIAAPILLFIYDWR 827
           F+A PI+  + +  
Sbjct: 334 FLATPIVADLKERE 347


>gi|113972163|ref|YP_735956.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. MR-4]
 gi|114049413|ref|YP_739963.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. MR-7]
 gi|113886847|gb|ABI40899.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. MR-4]
 gi|113890855|gb|ABI44906.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. MR-7]
          Length = 1044

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 75/695 (10%), Positives = 178/695 (25%), Gaps = 57/695 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++PS  P               +V+  + 
Sbjct: 8   RPIFAWVIALIIMLAGVLSI-----RSLPVSQYPSIAPPT-------------VVISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       I   S       ITL+F      +    +V  
Sbjct: 50  PGASAKIVEDSVTQVIEQRMKGIDHLRYIASTSDSFGNASITLTFNAEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQG  + L  + +   +         +++             + +  +     D +   
Sbjct: 110 KLQGAMTLLPQEVQSQGVNVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANIQDPMSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L Q   T+  +       N        G        
Sbjct: 170 PGVGEIQLFGAQ-YAMRIWLDPLKLTQYNLTSLDVVSAIRAQNAQVSAGQLGGTPSLPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +      F      +       
Sbjct: 229 ELNATVSAQSRL-------------QTPEQFRKIIIKSDTSGANVFLADVARVELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +      +          +   T E        LR         +           
Sbjct: 276 AVESLYNGKPASGIAIKLATGANALDTAEAVRAKVEELRPFFPAGLDVVYPYDTTPFVEK 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSATGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + F  G      R F+IT+  ++ +S+  A+ +  A+   +          I        
Sbjct: 456 MAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCATMLKPLKKGHGHIETGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R+    +  + L        +         + +G +    
Sbjct: 516 NRGFDRLTNRYESSVAGIVKRSFRVMMIYAALVVAVGWIFMRMPTAFLPDEDQGILFTQA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +             LE +    +       E                Q + + +    + 
Sbjct: 576 ILPTNSTQESTMKVLEKVSDHYM------AEDAVKSVFSVAGFSFAGQGQNMGIAFVGLK 629

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +                 +  +  +     + + +
Sbjct: 630 DWSEREAPGMDVQSIAGRAMGVFSQMKEAFVFAFV 664



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 84/250 (33%), Gaps = 6/250 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L+ V       +   +         + +        +++     +    +++ 
Sbjct: 255 TSGANVFLADVARVELGSESYAVESLYNGKPASGIAIKLATGANALDTAEAVRAKVEELR 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  ++ + + + + +++  + +   L     + +
Sbjct: 315 PFFPAGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    +  G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPLEATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F+I +   + ++   ++ +   +
Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPAL 492

Query: 820 LLFIYDWRAK 829
              +     K
Sbjct: 493 CATMLKPLKK 502



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 75/261 (28%), Gaps = 11/261 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +       V  S   +         +   N     N           
Sbjct: 774  QYRMQPEDLDTWYVRNNKGDMVPFSAFATGAWEYGSPRLERFNGLPAMNIQGATAPGFST 833

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + +MVK+            + E              +  + I  +  L+   + 
Sbjct: 834  GAAMNIMEDMVKQLPPGFGIEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 888

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 889  ESWSVPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 948

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 949  ---YEKGSGLIEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++ +    IF      + +  
Sbjct: 1006 MMSSTFLGIFFVPLFFVIVER 1026


>gi|117620943|ref|YP_857414.1| AcrB protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|117562350|gb|ABK39298.1| AcrB protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
 gi|156179563|gb|ABU54831.1| resistance nodulation cell division efflux pump [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 1049

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 69/685 (10%), Positives = 183/685 (26%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++PS  P            G         
Sbjct: 8   RPIFAWVIALVIMLAGSLAII-----KLPVAQYPSIAPPAV---------GISASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L                 +TL+F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQIIEQNMTGLDHLLYMSSQSDSSGRVSVTLTFQPGTDPDIAQVQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  + ++  +         ++++            + +  ++    + +   +   
Sbjct: 114 AMSLLPQEVQQQGIRVQKTSSSFLMVAAFISKDGAMTNDDLADYVVANIKEPLSRLDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP++L ++  T   +       N        G            
Sbjct: 174 DITLFGSQYSM-RVWLDPNKLNRVQMTPGDVQAAIKAQNTQVAFGKLGGTPAVSDQRFTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +S +              +    +        +        +           
Sbjct: 233 TIMGQTRLSTVE-------------EFNDILLRVNQDGSKVRLKDVARVELAGESYDAEA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +   T E        L          +           S   
Sbjct: 280 LYNGQSTAAVAIKLATGANALDTAEKVRGKLNELSTYFPANMEIVYPYDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+++ +   +  L+   ++ + ++ T  ++S  G ++   ++ G+V
Sbjct: 340 VVQTLVEAIFLVFCVMYLFLQNFRATLIPTIAVPVVLLGTFGVMSAFGFSINTLTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + ++ S   +     ++    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERLMSEEDLSPLEATRKSMTQITGALVGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F++T+  ++++S+  A+ +  A+   +           +       +   
Sbjct: 460 GGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCATLLKPIKHGEFGAKRGFFGWFNRAF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +     +   +G+  + + ++ +I  +         + +G I   V    
Sbjct: 520 DASANRYQSGVRKVVKQGVRYGIIYAAMLAVLAILFMRMPTSFLPEEDQGVIMSMVQLPV 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     L  ++   +  +  + +    V      G           +K       P
Sbjct: 580 GATKQRTEVVLADMRDYFMKNEKDNVDSVLTVAGFSFAGSGQNSGMAFIKLKDWKERNTP 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
             +              +    +  
Sbjct: 640 DRSANAIIGRAMGYLFSIKEAQVFA 664



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V     + +  D            +        +++     +     +++   
Sbjct: 258 SKVRLKDVARVELAGESYDAEALYNGQSTAAVAIKLATGANALDTAEKVRGKLNELSTYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P +             +  I + +  ++ +   +   +++  + +   L     + + + 
Sbjct: 318 PANMEIVYPYDTTPFVKISIEEVVQTLVEAIFLVFCVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  + FG   N   +  ++  IG  V+D +VV + +     +    +S  +   KS+
Sbjct: 378 GTFGVMSAFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ERLMSEEDLSPLEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GGS       F++ +   +V++   ++ +   +   
Sbjct: 436 TQITGALVGIALVLSAVFVPMAFFGGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 84/252 (33%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +            G    + ++G     +  +  PG S            K 
Sbjct: 789  VRNSAGQMVPFSAFASTDWSFGSPRLERYNGVPAMEIVGEAAPGKSTGDAMAAIEQMVKQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                             +   +      + +++  + +     +   W      +  + L
Sbjct: 849  LPEGIGIEWTGLSYQERQAGSQAPALYAISLLVVFLCLA---ALYESWSIPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    L G+E ++     +LT IG S  + +++ +  ++   LY   +   + + 
Sbjct: 906  GVLGAIVAATLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKE---LYDRGMGLSEAVV 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + VLP+ +    G S   +    +  G++ A   +IF     
Sbjct: 963  EAARLRLRPILMTSLAFILGVLPLVISTGAGASSRNAIGTGVMGGMISATVLAIFFVPLF 1022

Query: 820  LLFIYDWRAKNA 831
             + +  +  K++
Sbjct: 1023 FVLVMRYFTKHS 1034


>gi|108762794|ref|YP_632857.1| protein-export membrane protein SecD [Myxococcus xanthus DK 1622]
 gi|108466674|gb|ABF91859.1| protein-export membrane protein SecD [Myxococcus xanthus DK 1622]
          Length = 590

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 183/599 (30%), Positives = 292/599 (48%), Gaps = 88/599 (14%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR------------FPSAMPKNR--ISLG 47
           R   W   L   +    +   +P +    +LDR             P+  P  +  ++LG
Sbjct: 3   RGWWWKFGLIVAVTLGCIWFLIPTYYSLVVLDREQRNNLAVLEERMPAWAPPAKYRLNLG 62

Query: 48  LDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF--ADS 105
           LDL+GG H+V+ VD    +    +  + ++ +++  + +G  S      K+ ++    D 
Sbjct: 63  LDLQGGIHMVMRVDTKTALQKRTERRAQQIVNYVNDKKLGEVSADTDPEKLEVTLTAKDP 122

Query: 106 RFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
              + I  +V                  L+   ++  +             + A++Q+M 
Sbjct: 123 GTMDAIQKEVLATFTDFKEVSRSGASLTLVQDESQANVF-----------RTEAVDQAML 171

Query: 166 IIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN---- 221
           +IR+RID+ G++E  +++LG+  I I LPG  +P + ++L+GTTA++ F  V  +N    
Sbjct: 172 VIRRRIDKWGVAEVDVRKLGADSIQISLPGRSNPEQAKELVGTTAQLEFRMVDDSNPQFF 231

Query: 222 ----SKKGFMFGVRFLRDSDG--------------------------------------- 238
                      G      ++G                                       
Sbjct: 232 AQLLQATPPPAGSEITLTTEGGFPQLQAPTREAITEYTKDKVPENRVVLTECIANPVKKN 291

Query: 239 -----NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                  YL++  V ++G  L  A AN      +P V+ISFD  GAR F  +T   +G+ 
Sbjct: 292 ECTSYRSYLLDKNVPLTGESLASADANISQLN-EPEVNISFDPAGAREFERLTEQGVGRR 350

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISG--------NFTIETAGILAAMLRAGSLPIKLN 345
           +A+VLD  V TAP IN+ I  G A+I+            +  A  LA +L+AG+LP  + 
Sbjct: 351 MAIVLDENVQTAPNINEKISGGSARITMGRMGGRTFEEWLGEAQTLALVLKAGALPAPVT 410

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           + E R VGA LG + I KG  A V GL L++LFM + Y   GL+AD ++ LN +L LA L
Sbjct: 411 VGEIRQVGASLGDELIRKGGMAAVLGLGLVILFMAIYYRASGLIADLALVLNGLLILAGL 470

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           +   ATLTLP IAG VL +G+AVD+N+L+NERIREE    +S   ++D G+ RA+ TIFD
Sbjct: 471 AFFNATLTLPGIAGFVLTLGVAVDANVLINERIREELGHGKSARAAVDQGYDRAFWTIFD 530

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           S++TALI+  +LFF G G VRGFA T+ + +L S+FT+I++ R +M + +  +  K + 
Sbjct: 531 SHVTALISAFILFFTGTGPVRGFATTLIIGLLASLFTSITVTRVIMTYFVHGRNAKVVS 589



 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 107/280 (38%), Gaps = 7/280 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S+  +  +I  L    +N   D  G  +   L  + V   +     E++Q      +   
Sbjct: 311 SLASADANISQLNEPEVNISFDPAGAREFERLTEQGVGRRMAIVLDENVQTAPNINEKIS 370

Query: 613 GEKNFLVRLQYQPGDSVA--QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
           G    +   +                 +  K   +    T+     VG  +  ELIRKG 
Sbjct: 371 GGSARITMGRMGGRTFEEWLGEAQTLALVLKAGALPAPVTVGEIRQVGASLGDELIRKGG 430

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           +  ++    +++++ I ++    L A   L+L+    L   A F     L  +A  +  +
Sbjct: 431 MAAVLGLGLVILFMAIYYR-ASGLIADLALVLNGLLILAGLAFFNATLTLPGIAGFVLTL 489

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G +V+  V++ +R+R+ +       S R  +D+  +        + + A IS   +   G
Sbjct: 490 GVAVDANVLINERIREEL---GHGKSARAAVDQGYDRAFWTIFDSHVTALISAFILFFTG 546

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAK 829
              +  FA  +  G++ +  +SI +   I+  F++   AK
Sbjct: 547 TGPVRGFATTLIIGLLASLFTSITVTRVIMTYFVHGRNAK 586


>gi|296113229|ref|YP_003627167.1| protein translocase subunit SecF [Moraxella catarrhalis RH4]
 gi|295920923|gb|ADG61274.1| protein translocase subunit SecF [Moraxella catarrhalis RH4]
 gi|326562867|gb|EGE13154.1| preprotein translocase subunit SecF [Moraxella catarrhalis 46P47B1]
 gi|326563691|gb|EGE13943.1| preprotein translocase subunit SecF [Moraxella catarrhalis
           103P14B1]
 gi|326565230|gb|EGE15415.1| preprotein translocase subunit SecF [Moraxella catarrhalis 12P80B1]
 gi|326566459|gb|EGE16609.1| preprotein translocase subunit SecF [Moraxella catarrhalis BC1]
 gi|326571003|gb|EGE21027.1| preprotein translocase subunit SecF [Moraxella catarrhalis BC7]
 gi|326573301|gb|EGE23269.1| preprotein translocase subunit SecF [Moraxella catarrhalis
           101P30B1]
 gi|326575802|gb|EGE25725.1| preprotein translocase subunit SecF [Moraxella catarrhalis CO72]
 gi|326576882|gb|EGE26788.1| preprotein translocase subunit SecF [Moraxella catarrhalis O35E]
          Length = 378

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 156/296 (52%), Gaps = 4/296 (1%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           LI +   I FM+     +  S+L  +  +  +   GLN+G+DF GG+   V   +PV+ +
Sbjct: 60  LIANQRIIPFMKLEKPMIVFSVLSILIGLIAIIVKGLNFGLDFTGGVSANVAYEQPVEQA 119

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   L      D   Q     +  LVRL  Q G +   +  L+ +   +      STI 
Sbjct: 120 QVIKALADNGFNDAVVQYLGTRQELLVRLPPQDGSAENLSASLDQI---LNFPNNPSTID 176

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +  I+G ++  E+    ++ + ++   MLIY+  RF++  ALGA+  L  D+   +G FA
Sbjct: 177 SISIIGSQLGNEIYLNSLLAMSVALGMMLIYVATRFQFKLALGAVLALFHDVIIVVGIFA 236

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           + G  F+LT +AAVL LIGYSVND +VVYDR+R+N +     ++ R ++D S+ ETL R+
Sbjct: 237 IMGWPFDLTVLAAVLALIGYSVNDTIVVYDRIRENFRR-VRGLTPRQVLDLSLTETLRRT 295

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + T    F+ V+ M   GG  +  F++ +  G++    SSI++A+ I L +   R 
Sbjct: 296 IMTVGTVFVVVVAMLFLGGDGLYWFSVALFIGLIAGTYSSIYVASSIPLMMGLSRE 351


>gi|269101988|ref|ZP_06154685.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161886|gb|EEZ40382.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 1036

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 70/685 (10%), Positives = 180/685 (26%), Gaps = 42/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +  L        + ++P+  P                  +   
Sbjct: 8   RPIFAWVIAIIIMLAGTMAIL-----TLPVAQYPTIAPPAIQ---------ISATYQGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        +        ITL+F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQNMTGLDNLMYMSSTSDSSGNASITLTFEAGTDPDIAQVQVQNNLQR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  +         + ++            +    +  +  D +       
Sbjct: 114 ATSQLPTEVQQLGISVRKSTSSFMSVTAFVSTDNSMTGQDIMDYVSSRVKDPVSRVAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    DP++L     T   +       N        G            
Sbjct: 174 DVMVFGTQ-YAMRIWLDPAKLNSYNLTPIDIVNAIRQQNTQVTVGQIGGAPAVKGQMINA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +  +              +    +        +        +           
Sbjct: 233 TITARNRLESVQ-------------QFKDILLRVNKDGSQIRIKDVARVELGGESSDFIT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L A                    S   
Sbjct: 280 RFDGKPASGIGIKLATGANALDTQKAVDAKLEELSANFPQGLKMYKAMDTNPFVKLSIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +++  G T+   ++ G+V
Sbjct: 340 VVSTLFEAIVLVFLVMYLFLQNIRATLIPTIAVPVVLLGTFGVMAACGFTINTLTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPVEATKKSMGQISGALVGVAMVLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
            G      R F++T+  ++++S+  A+ +  A+   +          +       +    
Sbjct: 460 TGSTGAIYRQFSLTIVAAMVLSVLVAMILTPALCATMLKAGDADHGEKKGFFGWFNRIFD 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +A    R+  + +   +L  +               + +G   + V     
Sbjct: 520 RTANGYQSSVAGILKRSGRFVIVYLLLLPVIGWMFKSIPSSFLPNEDQGNFMVMVQLPPG 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             L   +  ++ +     + +    E  F V      G +         +K       P 
Sbjct: 580 ASLERSQKVMDEVTHYFETEEKSTVESVFTVSGFSFVGQAQNAGMAFVGLKDWSERTAPG 639

Query: 649 STIQNTEIVGPKISRELIRKGIVGV 673
           + + +         ++     I  V
Sbjct: 640 TDVNSIIKRAMIHFKDNQDAMIFAV 664



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 83/252 (32%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N+   +     +      G      ++G  +F +  +  PG S  +           
Sbjct: 788  VRNNKGEMVPFSAFSQSHWGFGSPRLARYNGNSSFEILGEAAPGYSTGEAMAAIEQIASK 847

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W   +  I  + L
Sbjct: 848  LPEGITVSWTGMSYQERLAGSQAPMLYALSMLVVFLCLA---ALYESWSVPIAVILVVPL 904

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L      G+E ++     +LT IG +  + +++ +  ++   L+   +   +   
Sbjct: 905  GVLGALAATMFRGLENDVYFQVGLLTTIGLAAKNAILIVEFAKE---LHEKGMGLIEATV 961

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + VLP+ +    G +   +    +  G++ A   +IF     
Sbjct: 962  EACRMRLRPIIMTSLAFILGVLPLVMSSGAGANSRHAIGTSVMGGMISATVLAIFFVPLF 1021

Query: 820  LLFIYDWRAKNA 831
             + I     +  
Sbjct: 1022 FVLITKLFTRKK 1033



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + +  V       +  D   +      + +        +++   + ++   ++++   
Sbjct: 258 SQIRIKDVARVELGGESSDFITRFDGKPASGIGIKLATGANALDTQKAVDAKLEELSANF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P        +      +  I + +  +  + + + + +++  +     L     + + + 
Sbjct: 318 PQGLKMYKAMDTNPFVKLSIEEVVSTLFEAIVLVFLVMYLFLQNIRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   +  ++  IG  V+D +VV + +     +    +S  +   KS+
Sbjct: 378 GTFGVMAACGFTINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPVEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA   GS       F++ +   +V++   ++ +   +
Sbjct: 436 GQISGALVGVAMVLSAVFVPMAFMTGSTGAIYRQFSLTIVAAMVLSVLVAMILTPAL 492


>gi|229590184|ref|YP_002872303.1| putative efflux system transmembrane protein [Pseudomonas
           fluorescens SBW25]
 gi|229362050|emb|CAY48951.1| putative efflux system transmembrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 1030

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 81/687 (11%), Positives = 177/687 (25%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P+  P               + +    
Sbjct: 8   RPIFAWVVALFILLAGALAI-----PQLPVAQYPNVAPPK-------------VEIYAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  L +     +   L                   IT +F      E     V   
Sbjct: 50  PGASAQTLDESVVSLIEQELNGADHLLYFESQSSLGSATITATFQPGTNPEMAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V  +L     +  L         ++L     +      +  S  + R  ++++   +
Sbjct: 110 LKAVEPRLPQAVTQQGLQVEKVSAGFLLLVTLTSNDGKLDDVALSDYLARNVMNELKRLD 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +L     T A ++      N        G     +S  
Sbjct: 170 GVGKAQLYGA-ERAMRIWIDPQKLIGFNLTPADVNAAISAQNAQVSAGSIGDLPGTNSQE 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K ++S                +    +                 +        
Sbjct: 229 ITAAVLVKGQLS-------------TPAEFADIVLKANPDGSTVRIGDVARVEVGSQEYQ 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L                +   T          L           +          S
Sbjct: 276 FSTRLNGKPSTAVSVQLSPGANALNTATRVRAKMDELSRFFPANVEYKIPYDTSPFVKVS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +    T      LV  V+F+ +   ++ L+    + + ++ T A + LLG ++ + ++ 
Sbjct: 336 ITKVVYTLLEAMALVFAVMFLFLQNVRYTLIPTLVVPIALMGTFATMLLLGFSINVLTMF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   + +
Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMATEGLSPKDATKKAMGQITGAIVGITLVLVAVFLPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            F  G      + F+++M  SIL S F A+++  A+   +         + K        
Sbjct: 456 GFMAGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPIAKGEHHAKGGFFGGFN 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                L            +  G  + I   +          L             +   +
Sbjct: 516 KRFEQLTDRYEGWVAYALKRSGRYLLIYLMLLVGLGWMFSRLPSSFLPVEDQGYTITDIQ 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     ++  +  +       G  +  + + +    S     +     K  +E   
Sbjct: 576 LPPGASKNRTVQVAEQIEAHNAGEPGVGDTTMIMGFSFSGSGQNAALAFTTLKDWSERSS 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             +  +          EL       ++
Sbjct: 636 DDSASSIADRANMAFSELKDAIAYAIL 662



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q    S +        +        +++     +     +++   
Sbjct: 257 STVRIGDVARVEVGSQEYQFSTRLNGKPSTAVSVQLSPGANALNTATRVRAKMDELSRFF 316

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P +             +  I K +  ++ +   +   +++  +   + L     + + + 
Sbjct: 317 PANVEYKIPYDTSPFVKVSITKVVYTLLEAMALVFAVMFLFLQNVRYTLIPTLVVPIALM 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N+  +  ++  IG  V+D +VV + +     + T  +S +D   K++
Sbjct: 377 GTFATMLLLGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMATEGLSPKDATKKAM 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      LPM    GSV      F++ MA  I+ +A  ++ +   +   
Sbjct: 435 GQITGAIVGITLVLVAVFLPMGFMAGSVGVIYQQFSLSMATSILFSAFLALTLTPALCAT 494

Query: 823 IYD 825
           +  
Sbjct: 495 LLK 497



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 77/231 (33%), Gaps = 11/231 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A + V LS       +     ++  N                   A   +  +V +   
Sbjct: 788  NAGKMVPLSAFVEAKWTQGPTQLTRYNGYPAIAISGEAAPGHSTGEAMDEIQRLVSQLPA 847

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
             +    T  + +         L+    + ++   +A      +   W      +  + L 
Sbjct: 848  GLGQEWTGLSLQERLSGAQAPLLLGLSLLIVFLCLA-----ALYESWSIPTSVLLVVPLG 902

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +   +   +L G+  ++     ++T+IG S  + +++ +  +    LY           K
Sbjct: 903  VLGAVVAVSLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAKD---LYDQGEDLITATLK 959

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASS 811
            +    L   + TS+A  + V+P+A+  G+   S       +  G++ A  +
Sbjct: 960  AARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLA 1010


>gi|33598341|ref|NP_885984.1| hypothetical protein BPP3832 [Bordetella parapertussis 12822]
 gi|33566899|emb|CAE39115.1| probable membrane protein [Bordetella parapertussis]
          Length = 1028

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 158/533 (29%), Gaps = 39/533 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  +I  IGL+        +  +  +P                      +  
Sbjct: 9   RRPVFASVLSLIIVLIGLIS-----YTRLSVREYPKIDEPIV---------SVDTTYKGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++   +     R  ++ I + F+ SR  +  A +V   +  
Sbjct: 55  SPEVIESQVTKPLEDQLAGIEGVDVMTSRSRSERSLINIKFSLSRDPDAAAAEVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  + ++         I+            AI+ S  I R    ++ +     
Sbjct: 115 ARRFLPDEIDEPIIGKVEADSQPIIYIAVES--GSYSAIQTSDYINRYIKTRLSVLPGAA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    D  +L     T   +       N          R    S  +  
Sbjct: 173 EVRVFGERLPSMRIYVDRDKLAAYGLTVQDVEAALRSQNVEIPAGRIESRAREFSVVSST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                      D+    +            +    A      
Sbjct: 233 DLQTPAQFE--------------------DVVVANVKGYPVRLRDVAKVEIGAANDRVLS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + ++  +     +        L           +   +      S   
Sbjct: 273 RYNGRSAINIGLTRQSTANPLELSKAVRAEIVQLNQSLPAGMKLNIAYDSSVFIERSIDS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F  +   +  ++   +I ++++   AL+ L G ++   ++  +V
Sbjct: 333 VFKTIGEAIILVVLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G       +    +T +     L F  
Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGMPRKQAAFQGSREIGFAVVAMTLTLVTVYAPLAFAT 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           G   R    FA+ +  ++L+S F A+++   M   ++R++   +   N +  +
Sbjct: 453 GRTGRLFIEFALALAGAVLVSGFVALTLTPMMCSVLLRHQHSHNRWYNLIEGW 505



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 76/216 (35%), Gaps = 7/216 (3%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +    + +  ++ +     ++ + +P     N            I      +  + I +
Sbjct: 285 TRQSTANPLELSKAVRAEIVQLNQSLPAGMKLNIAYDSSVFIERSIDSVFKTIGEAIILV 344

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ++ I+   +    ++  I T+ + +        LFG   N   + A++  IG  V+D +V
Sbjct: 345 VLVIFFFLRNLRASIIPIVTIPVSLVGACALMYLFGFSINTLTLLAMVLAIGLVVDDAIV 404

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---S 796
           V + +    +     +  +    +   E     V  ++       P+A   G        
Sbjct: 405 VLENI---FRHIEEGMPRKQAAFQGSREIGFAVVAMTLTLVTVYAPLAFATGRTGRLFIE 461

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           FA+ +A  ++V+   ++ +   +   +   +  + R
Sbjct: 462 FALALAGAVLVSGFVALTLTPMMCSVLLRHQHSHNR 497



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/128 (14%), Positives = 52/128 (40%), Gaps = 6/128 (4%)

Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            G + ++ +     IY+ +      W      + ++ L +T  L    L G   ++ +  
Sbjct: 845 SGSIYLVFAMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQI 904

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++TL+G      +++ +      +L     +  + + ++    L   + T+ A  +  +
Sbjct: 905 GLITLVGLITKHGILIVEFAN---QLRDQGKAMHEAVVEASVLRLRPILMTTGAMVLGTV 961

Query: 785 PMAVWGGS 792
           P+A+  G+
Sbjct: 962 PLALAQGA 969


>gi|71153377|sp|Q93PU4|TTGH_PSEPU RecName: Full=Toluene efflux pump membrane transporter TtgH
 gi|14582625|gb|AAK69564.1|AF299253_4 inner membrane efflux pump component TtgH [Pseudomonas putida]
          Length = 1049

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 77/691 (11%), Positives = 175/691 (25%), Gaps = 51/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G L        +  + ++P+                  + ++V  
Sbjct: 8   RPIFAWVLAIVAMLAGALSLA-----KMPISQYPNIAAPA-------------VSIQVSY 49

Query: 63  DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +Q       ++  S L              +  I ++F      +    +V  
Sbjct: 50  PGASAQTVQDTVVQVIEQQLSGLDGFRYMSAESASDGSMTIIVTFEQGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  + ++  L     +    ++             +    I  Q  D I   
Sbjct: 110 KLQLATPRLPEEVQRQGLRVVKYQMNFFLVMSLVDRSGKLDNFDLGNLIASQLQDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   ++      N        G    R   
Sbjct: 170 PGVGDFQLFGSP-YAMRIWLDPGKLNSYQLTPTDVASAIREQNVQVSSGQLGGLPTRSGV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K  ++                +    +        +                
Sbjct: 229 QLNATVLGKTRMT-------------TPSQFDEILVKVNPDGSQVRVKDVGRAELGADSF 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T++    L    +A        I           
Sbjct: 276 AISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYLPDGVEVIYPYDTTPVVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ALL   G  + + ++
Sbjct: 336 SIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLLATFALLPYFGLNINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 YAMVLAIGLLVDDAIVVVENVERLMHDEGLSPLEATRKSMDQISGALVGIGMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      + FAIT+ + + +S+  A+    A+ + I           R       
Sbjct: 456 MAFFGGSAGIIYQQFAITIVVCMGLSILVALVFTPALCVTILKAPEGNSHHERKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +         + +   ++                  + +G + + V
Sbjct: 516 NRIFDRGTRRFERGVGAMLKGRGRYLLAFLLITGGTGYLFTQIPKAFLPNEDQGLMMIEV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L+ ++    + +    E    V      G       VL   K    
Sbjct: 576 RTPANASAERTEGVLQEVRDYLANDEGALVEHFMTVNGFNFAGRGQNSGLVLITFKDWKE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                  + +      +   ++    ++  +
Sbjct: 636 RHGAGQDVFSIAQRANQHFAKIKDASVMAFV 666



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V           IS Q  D     L       G+ +     ++ + ++    +
Sbjct: 258 SQVRVKDVGRAELGADSFAISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P             +    I   +  +  + + + + +++    +   L     + + + 
Sbjct: 318 PDGVEVIYPYDTTPVVEASIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T      FG+  N+  + A++  IG  V+D +VV + +     ++   +S  +   KS+
Sbjct: 378 ATFALLPYFGLNINVLTMYAMVLAIGLLVDDAIVVVENV--ERLMHDEGLSPLEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  V   M      +PMA +GGS   +   FAI +   + ++   ++     + + 
Sbjct: 436 DQISGALVGIGMVLSAVFVPMAFFGGSAGIIYQQFAITIVVCMGLSILVALVFTPALCVT 495

Query: 823 IYD 825
           I  
Sbjct: 496 ILK 498



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 79/259 (30%), Gaps = 10/259 (3%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +     + V  S   +         +         N L           
Sbjct: 778  RISPEDFDKWYVRNSLGQMVPFSAFATGEWVNGSPRLERYGGISSLNILGEPAPGYSTGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +   + E++++    I    T  + E +       L+       +   I +L    +   
Sbjct: 838  SMIAIAEIMQQLPAGIGLSYTGLSYEEIHAGDQAPLLYA-----LTVLIVVLCLAALYES 892

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W   +  I  + L I   +       +  ++     ++T +G S  + +++ +  ++  +
Sbjct: 893  WSVPVSVIMVVPLGILGAVLATLWRDLTADVYFQVGLMTTVGLSAKNAILIVEFAKELYE 952

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                         ++    L   + TS+A    VLPMA+    G     S A  +  G++
Sbjct: 953  KE--GYPIVKAAIEAAKLRLRPILMTSLAFTFGVLPMAIASGAGAGSQHSIATGVVGGMI 1010

Query: 807  VAASSSIFIAAPILLFIYD 825
             A   ++F      + +  
Sbjct: 1011 TATVLAVFFVPLFYVVVVK 1029


>gi|37523557|ref|NP_926934.1| RND multidrug efflux transporter [Gloeobacter violaceus PCC 7421]
 gi|35214561|dbj|BAC91929.1| RND multidrug efflux transporter [Gloeobacter violaceus PCC 7421]
          Length = 1050

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 150/543 (27%), Gaps = 32/543 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   +I   GL+       P   + ++P   P                     
Sbjct: 8   RRPIFAGVCAVIILLAGLVSI-----PSLPIAQYPEISPPQVT---------VTATYVGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++       +      + I ++F   R K+  A  V   + 
Sbjct: 54  SAEVVEETVTTLLERQINGVEGMRYITSNSSDQGVSTIVVTFELERDKDIAAVDVQNRIS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L    ++  +  + +    ++      ++        S       +D +      
Sbjct: 114 TVLPQLPSLVQQTGVQISKQSGAPLLGIGLYSEKGQYTNDLLSNYADLYLVDALKRVPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP+RL     T   +       N        G   L  S   Q
Sbjct: 174 GNVQIFGERRYSMRLWLDPNRLAARSLTAQDVVNAVNEQNVQVGAGSIGQPPLDKSQTFQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     +              +  +    +                            
Sbjct: 234 IGLRVLGRL-------------KEPGEFADLVIRTNADGSLTRLKDVGRAELGAENYNSF 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +     +      A L     P     V          S +
Sbjct: 281 LRFRGQDGVGLGIYPIPGSNALDIGKAVKARMAELEKSFPPGVQYRVAFDTTDFIEESAA 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV++V+F+ +   K  L+   +I ++++ T   + L   ++   ++ G+
Sbjct: 341 EVIETLIIAILLVVLVMFIFLQDWKSTLIPAITIPVSLVGTFIFVKLFDFSINSLTLFGL 400

Query: 421 VLGIGLAVDSNILVNERI--REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            L  GL VD  I+V E I    + +      C+ D       + I  + +   +   V F
Sbjct: 401 TLATGLVVDDAIVVIENIARTSKEQCKDPKECASDAMREVTAAVIAIALVLMAVFVPVAF 460

Query: 479 FFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           F G      + FA+T+  SI+IS F A+++  A+   +   +  +S              
Sbjct: 461 FPGTTGQLYKQFALTIVFSIVISTFNALTLTPALAALLSTGQVGESRFFLFRWFNSGFEA 520

Query: 537 CIA 539
              
Sbjct: 521 FKN 523



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 82/235 (34%), Gaps = 6/235 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  +   +    +   L        +++   + ++    ++ +  P     
Sbjct: 266 DVGRAELGAENYNSFLRFRGQDGVGLGIYPIPGSNALDIGKAVKARMAELEKSFPPGVQY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                      E   + I  +II+ + +++ ++I    W   L    T+ + +  T  F 
Sbjct: 326 RVAFDTTDFIEESAAEVIETLIIAILLVVLVMFIFLQDWKSTLIPAITIPVSLVGTFIFV 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LF    N   +  +    G  V+D +VV + +             ++    ++ E    
Sbjct: 386 KLFDFSINSLTLFGLTLATGLVVDDAIVVIENI--ARTSKEQCKDPKECASDAMREVTAA 443

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            +  ++      +P+A + G+       FA+ + F IV++  +++ +   +   +
Sbjct: 444 VIAIALVLMAVFVPVAFFPGTTGQLYKQFALTIVFSIVISTFNALTLTPALAALL 498



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/381 (10%), Positives = 107/381 (28%), Gaps = 9/381 (2%)

Query: 455  GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G   A    F++     ++    F F         I    +    +    +    +    
Sbjct: 653  GIKEALVIPFNAPTIQGLSAFGGFAFELQDRGNNGIEALSATAQELIAKGNATPGLQGLF 712

Query: 515  IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
              +       +  + R       + +  +         S   +  ++            +
Sbjct: 713  TTFNPNSPQIVIEVDRNKAKSLNVPLSEIFNTLQTYLGSRYVNDFNLFGRTYRVYVQADE 772

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                    + A      S    ++  L   +            L R     G++      
Sbjct: 773  KFRANPRDIRALYVRSTSGRMVSMGELVSTEPVTAPSIVTHYNLFRNVEITGNAAPGFSS 832

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWY 691
             + +                         E +  G+   I +   + +Y+ +        
Sbjct: 833  GQAIAAMEKLAAETLPASMGFEWSGISLEEKVSGGLAPFIFALGILFVYLVLAAQYESLV 892

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
                 +  + L +   L   +  GI  ++     ++ LIG +  + +++ +      +  
Sbjct: 893  EPFIILLAVPLAVLGALLALSFRGIANDVYCQIGLVMLIGLASKNSILIVEFAN---QAR 949

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S  D   ++  E L   + TS A  + + P+ +    G +   S    +  G++++
Sbjct: 950  ERGMSIVDAALEASRERLRPILMTSFAFILGIWPLVIASGAGAASRQSLGTAVFGGMIIS 1009

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
               S+F+   + + +   R +
Sbjct: 1010 TFLSLFVVPILYIVLVSIRER 1030


>gi|329938961|ref|ZP_08288335.1| preprotein translocase subunit SecF [Streptomyces griseoaurantiacus
           M045]
 gi|329301846|gb|EGG45739.1| preprotein translocase subunit SecF [Streptomyces griseoaurantiacus
           M045]
          Length = 385

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 14/303 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    +   F+  R    G+SIL +I +I  L   GLN GIDF+GG          V +
Sbjct: 10  RLHRGEVGYDFVGHRKIWYGVSILITITAIVGLAVRGLNMGIDFQGGAVFTTP-KTSVSV 68

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S   +  E     +   Q         +R+Q    D+     +   + K +      +  
Sbjct: 69  SQAETYAEEAAGHEAVVQKLGTGG---LRIQVAGLDTSKSDEIKAALAKDMK---IDTEN 122

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            N ++VGP    ++  K   G+ I  + ++IY+ I F+W  A+ A+  LI DIT T G +
Sbjct: 123 INADLVGPSWGEQIANKAWEGLAIFMVLVVIYLAIAFEWRMAVAALVALIHDITITTGIY 182

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           AL G E     V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ ++SIN TL
Sbjct: 183 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDLTKQTRWTYSEVANRSINGTL 242

Query: 770 GRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ T++ A + V  +   GG       +   ++ +  G+   A SSIFIA P++  + 
Sbjct: 243 VRSINTTVVALLPVAGLLFIGGGFLGAGTLNDISLSLFVGLAAGAYSSIFIATPLVADLK 302

Query: 825 DWR 827
           +  
Sbjct: 303 ERE 305


>gi|238919140|ref|YP_002932654.1| acriflavine resistance protein B [Edwardsiella ictaluri 93-146]
 gi|238868708|gb|ACR68419.1| acriflavine resistance protein B [Edwardsiella ictaluri 93-146]
          Length = 919

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 73/689 (10%), Positives = 178/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++       GLL        Q  ++++P+  P               + +    
Sbjct: 29  RPIFAWVIAIFFSLAGLLAI-----HQLPIEQYPNLAPPT-------------VRISASY 70

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +            S       ITL+F           +V  
Sbjct: 71  PGASAQTLENTVTQIIEQNMTGLDGLIYTSSQSSSSGSASITLTFQSGTDPNEAMQQVQN 130

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     KL  + ++  +  +   + S++              + +  +       I   
Sbjct: 131 QLSAATRKLPQEVQQQGIRVSKSGDSSLMTIAFVSTDDSMDRQDIADYVASNLQGPISRI 190

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L Q   TT  +       N+       G        
Sbjct: 191 DGVGSIDAFGSQ-YAMRIWLDPNKLNQFRLTTQDVISAIKSQNSQIAVGQIGATLAVPGQ 249

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                     NI       
Sbjct: 250 ALNATLMAQSQL-------------QTPKQFREITLRVNSDGSLVTLGDVANIELGAEKY 296

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +     +       +  +   T        A L                      
Sbjct: 297 DYLSRVNGKPASGMSIKLASGANELATDARVKAKLAQLEPYFPHGLKVEYAYETTPFVQA 356

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV + +++ +   +  L+   ++ +  + T A+L  +G ++   ++
Sbjct: 357 AIQDAVKTLFQAIALVFLAMYLFLQSLRATLIPTIAVPVVQLGTFAVLFAMGYSINTLTM 416

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL V+  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 417 FAMVLAIGLLVNDAIVVVENVERLMSEEGLSPREATRKSMDQIQGALVGIALVLSAVFVP 476

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRF 531
           +  FGG      R F+IT+  ++ +S+  A+ +  A+   ++R      +         F
Sbjct: 477 MALFGGTTGVTYRQFSITIVFAMPLSVLVALILTPALCATLLRPVSKTQLHAKKGFFGWF 536

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK--------GGIQLGV 583
               +  A+++       V  S    +  + +L   G  Y             G     +
Sbjct: 537 NRTFERSALRYENGVARVVRNSGRSMLLYLLILGGLGTLYLHLPTSFLPQEDRGVFMTQI 596

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         ++ ++   +  +  + +  F +      G+     R+    K    
Sbjct: 597 QLPVGATQQETLKVVDKVENYLLVGEGKNVQSVFSIVGAGPGGNGQNVVRMFVRFKPWEQ 656

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         +    +    +  
Sbjct: 657 RTGDADSAGAIIERTSRAFANIREARVFA 685



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 83/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + +        + +A    ++    ++    P 
Sbjct: 281 VTLGDVANIELGAEKYDYLSRVNGKPASGMSIKLASGANELATDARVKAKLAQLEPYFPH 340

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                         +  I+  +  +  +   + + +++        L     + +    T
Sbjct: 341 GLKVEYAYETTPFVQAAIQDAVKTLFQAIALVFLAMYLFLQSLRATLIPTIAVPVVQLGT 400

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  VND +VV + +     +    +S R+   KS+++
Sbjct: 401 FAVLFAMGYSINTLTMFAMVLAIGLLVNDAIVVVENV--ERLMSEEGLSPREATRKSMDQ 458

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA++G   G     F+I + F + ++   ++ +   +   + 
Sbjct: 459 IQGALVGIALVLSAVFVPMALFGGTTGVTYRQFSITIVFAMPLSVLVALILTPALCATLL 518

Query: 825 D 825
            
Sbjct: 519 R 519


>gi|17544729|ref|NP_518131.1| acriflavin resistance transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17427018|emb|CAD13538.1| putative acriflavin resistance transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 1049

 Score =  193 bits (490), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 68/664 (10%), Positives = 177/664 (26%), Gaps = 49/664 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G +        Q  + ++P+  P               +++    
Sbjct: 8   RPVFAWVLALFIIVAGAISI-----TQLPIAQYPTIAPP-------------SIIITATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN--KITLSFADSRFKENIADKVT 116
                  L       +   +             +       IT++F            V 
Sbjct: 50  PGASAKTLDDAVTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V ++L     +  +     +   ++ +           +     I R  ++++  
Sbjct: 110 NRLKRVEARLPSSVTQQGVQVDKTRSNFLLFATLISKDGKMDPVALGDYISRNVLNEVKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q +        +    DP++L     T   +       N        G       
Sbjct: 170 VPGVGQAVLFGT-ERAMRIWIDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +   V + G             T +    +   +    +        +      
Sbjct: 229 QP----IAATVVVEGQ---------MTTTEQFGNIVLVSKPDGSQVRIKDVARLELGGQT 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +    I+          +   T +        L           +         
Sbjct: 276 YATSARINGQPISAIGVQLSPTGNALGTAKAVKAKLDELSKYFPAGVEYKIPYDTSKFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   ++ L+    + ++++   A ++ LG ++ + +
Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLVFLQNIRYTLIPSIVVPISLLGAFATMNALGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +     +       +      +    I    +  +   +
Sbjct: 396 MFGLVLAIGILVDDAIVVVENVERIMSQEGLPPREATRKAMGQITGAIIGITLVLMAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDI 525
            + FF G      R F+++M  SI  S   A+++  A+   +         ++K      
Sbjct: 456 PMAFFSGSVGAIYRQFSLSMVASIFFSALMALTLTPALCSTLLKPIEKGSHHEKKGFFGW 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        ++     +     + I  ++ +  +     L             +  
Sbjct: 516 FNRMFTSTTDRYQSLVERVLKKTFRYMVIYGALIAAVVFLFMRLPSSFLPNEDQGYIITN 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +    +     LE ++  +  +Q+    +N +    +    +     ++    K  +  
Sbjct: 576 IQLPPAASANRTLEVIKHVENYYQHEKAVENIVAVQGFSFSGNGPNAALVFTTLKDWSSR 635

Query: 646 VPLS 649
               
Sbjct: 636 GADQ 639



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 89/260 (34%), Gaps = 6/260 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            F   + +       V +  V       Q    S +      + +       G+++   +
Sbjct: 246 QFGNIVLVSKPDGSQVRIKDVARLELGGQTYATSARINGQPISAIGVQLSPTGNALGTAK 305

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
            ++    ++++  P            K  +  I + +  +  +   + + + +  +   +
Sbjct: 306 AVKAKLDELSKYFPAGVEYKIPYDTSKFVQISIEEVVKTLFEAMALVFLVMLVFLQNIRY 365

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +          G   N+  +  ++  IG  V+D +VV + +     +  
Sbjct: 366 TLIPSIVVPISLLGAFATMNALGFSINVLTMFGLVLAIGILVDDAIVVVENV--ERIMSQ 423

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +  R+   K++ +  G  +  ++      +PMA + GSV      F++ M   I  +A
Sbjct: 424 EGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVASIFFSA 483

Query: 810 SSSIFIAAPILLFIYDWRAK 829
             ++ +   +   +     K
Sbjct: 484 LMALTLTPALCSTLLKPIEK 503



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/258 (10%), Positives = 79/258 (30%), Gaps = 9/258 (3%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    + +         V  S            Q      
Sbjct: 759  FPNYGRQQRVIVQADRINRMQPEDIMNLYVRNTQGSMVPMSAFAKGHWVVGPVQLVRYNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               VR+        +    ++ ++   + +      + T     + S       +  +  
Sbjct: 819  YPSVRISGDAATGASTGDAMDEMEHLASRLPAGIGFEWTGQSLQEKSSGSQAPALYAL-- 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            S +A+ + +   ++ W      I  + L +   L    L  +  ++     ++ ++G S 
Sbjct: 877  SLLAVFLVLAALYESWSIPAAVILVVPLGVLGALLGVTLRFMPDDVYFKVGLIAVVGLSA 936

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
             + +++ +  +    L        +   ++++      + TS A  + VLP+A+  G+  
Sbjct: 937  KNAILIIEFAKD---LQAQGKGLIEATLEAVHLRFRPIIMTSFAFILGVLPLAIATGASS 993

Query: 795  ---GSFAIPMAFGIVVAA 809
                +    +  G++ A 
Sbjct: 994  ASQRAIGTGVMGGMITAT 1011


>gi|91223972|ref|ZP_01259235.1| putative acriflavin resistence protein [Vibrio alginolyticus 12G01]
 gi|91190883|gb|EAS77149.1| putative acriflavin resistence protein [Vibrio alginolyticus 12G01]
          Length = 1050

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/692 (11%), Positives = 182/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPQISPP-------------SVSVSAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           ++   +          +    DP ++  L  TT+ +       N        G     + 
Sbjct: 170 AKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYAALAEQNVQVAAGRVGAAPYNNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANPNGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGNGKFRGQDASIVALSLQSDANALESGQAVMELLEGLSKNFPEGMEYETSYDTTVFVS 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSISPRKATLLAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           I   +L    G   R FA+T+ +S++IS   A+++  A+   +            ++ + 
Sbjct: 457 IPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTANWFQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  +     T       + KG + + V  
Sbjct: 517 GLERITTRYGQIAGFLVKKSLLLVTFFIVAIAAVTFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     V   +    T  
Sbjct: 577 PDSASLSRTEEVTNDLMKMIGEEPGVDGVTVANGYSFMTGAAASNGASVFIKLHDWDTRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                     I      R         V+ + 
Sbjct: 637 SLQGEHSANAIAARINGRAATE-LPQAVVFAM 667



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 86/235 (36%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D + +    + + +        +++   + +  + + +++  P 
Sbjct: 262 VYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESGQAVMELLEGLSKNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GMEYETSYDTTVFVSESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         SIS R     ++ E
Sbjct: 382 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPSISPRKATLLAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      +P+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 52/447 (11%), Positives = 116/447 (25%), Gaps = 26/447 (5%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            L+      P + G+ +  G +  +    +       + +     +   G   A +     
Sbjct: 592  LMKMIGEEPGVDGVTVANGYSFMTGAAASNGASVFIKLHDWDTRNSLQGEHSANAIAARI 651

Query: 467  NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
            N      +   V+F  G  AV G     G   ++      S   +   M   I    +  
Sbjct: 652  NGRAATELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLSMVMGEMIQAANQAP 711

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             I     +    +P                            L +  +N    F    ++
Sbjct: 712  EIAYTFSTFRANVPHYYVDIDREKAQQLGISLSSIFQTLQGNLGSLYVNDFTMFGKNFRV 771

Query: 582  GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + A+              V  S       S  +        D    + +          
Sbjct: 772  TMQADSQHRSSMEDLERFHVRSSNGDMVPLSTLVSYEQVFEPDVAWRYNMYRSAIIQGQP 831

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
            A           +  +      Q        ++ + +  G   +   +   + IY   + 
Sbjct: 832  APGYSSGDAIAAMERVAAEVLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   L  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892  QYESWSIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
            +  +             K           TS +  + + P+    G+      S  + + 
Sbjct: 952  QEREE--KDADIDSAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGVSLI 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++    +  F+       +   R K
Sbjct: 1010 GGLLCVLLAGTFLIPGFYALVQRQREK 1036


>gi|325123248|gb|ADY82771.1| acridine efflux pump (RND family) [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 687

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/554 (11%), Positives = 153/554 (27%), Gaps = 41/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGILT-----LTKMPIAQYPTIAPPT-------------VTIAATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S    Q  I L+F      +    +V  
Sbjct: 50  PGASAETVENTVTQIIEQQMNGLDGLRYISSNSAGNGQASIQLNFEQGIDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  D ++  +  T      + +             +    +     + +   
Sbjct: 110 KLQSATALLPEDVQRQGVTVTKSGASFLQVIAFYSPDNSLSDSDIKDYVNSSIKEPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N+       G        
Sbjct: 170 AGVGEVQVFG-GSYAMRIWLDPAKLTSYQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +       +              +       
Sbjct: 229 VLNATVNAQSLL-------------QTPEQFKNIFLKNTASGAEVRLKDVARVELGSDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T E      + LR        + +          
Sbjct: 276 QFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPTGLADKLAYDTTPFIRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  ++   ++ + V+ T A++++ G ++   ++
Sbjct: 336 SIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLGTFAVINIFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     +  +    +      +    +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEHTDPVTATSRSMQQISGALIGITSVLTAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A++   A+   I++         N +   F 
Sbjct: 456 MAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPALCATILKQHDPNKAPSNNIFARFF 515

Query: 534 IPDCIAIQFMRARF 547
                    M   +
Sbjct: 516 RGFNNGFDRMSHSY 529



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 81/236 (34%), Gaps = 8/236 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +        L        +++     +E    ++ +  P 
Sbjct: 260 VRLKDVARVELGSDNYQFDSKFNGKPAGGLAIKIATGANALDTAEAVEHRLSELRKNYPT 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I   +  +I + + + I +++  + W   +     + + +  T
Sbjct: 320 GLADKLAYDTTPFIRLSIESVVHTLIEAVVLVFIVMFLFLQNWRATIIPTLAVPVVVLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N   + A++  IG  V+D +VV + +     +            +S+ +
Sbjct: 380 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEHTDPVTATSRSMQQ 437

Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +  TS+      +PMA +GG   VI   F+I +   +V++   ++     +
Sbjct: 438 ISGALIGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPAL 492


>gi|78222030|ref|YP_383777.1| hydrophobe/amphiphile efflux-1 HAE1 [Geobacter metallireducens
           GS-15]
 gi|78193285|gb|ABB31052.1| Hydrophobe/amphiphile efflux-1 HAE1 [Geobacter metallireducens
           GS-15]
          Length = 1053

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/693 (11%), Positives = 175/693 (25%), Gaps = 55/693 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  M+   GLL           + ++P   P               + +    
Sbjct: 8   RPIFAWVIAIMVMLAGLLAI-----KTLPVSQYPPIAPP-------------QITINAMY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +Q      +   L     +   S          I L+F           +V  
Sbjct: 50  PGASAQTVQDTVTQVIEQKLNGIDNLIYMSSTSDSAGAVAINLTFKAGTDPNIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    +K  +      +  +++     +         +  ++    D I  +
Sbjct: 110 KLQLATPLLPQIVQKQGIQVVKSTKNFLLIVGVVSEDGSMDRPALTDYLVANVQDVISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    +P++L     TT  +       N       FG        
Sbjct: 170 EGVGEVTVFGSQ-NAMRIWLNPAKLNNYHLTTNDVIAAVQAQNAQVSAGQFGGNPAPPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                         
Sbjct: 229 QLNATITARTLL-------------QTPEQFNAIILRTNPDGSTVRLKDVAECKIGTENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +        A  +   T +      A L          +           
Sbjct: 276 DIEARYKGKPMGGMALRLAAGANALDTADRVKAKMAELSKYFPAGMEVVYPYDTTPFVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV I++F+ +   +  L+   ++ + ++ T+  LS  G ++   ++
Sbjct: 336 SIEEVVQTLIEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGTMGALSAAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +V+ IGL VD  I+V E +      +  S   +      +  S ++          + 
Sbjct: 396 FALVIVIGLLVDDAIVVVENVERIMSEEGLSPHDATVKSMGQITSALWGIATVLSAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519
           + FFGG      R F+IT+  ++++S+ TA  +  A+   +                   
Sbjct: 456 MAFFGGSTGVIYRQFSITIISAMILSVMTAQILTPALCSTLLKPVEKGHEACETGWFCGF 515

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            +  +             +   F +   + V   ++ +  +   L         + +G I
Sbjct: 516 FRWFNKCFNWCRGRYEGIVGRSFGKPVRYLVIYGVIVAAMAFFFLRLPTAFLPDEDQGFI 575

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              V            + LE L+   +  +    E    +      G           +K
Sbjct: 576 VCQVQLPAGAAQERTITVLEQLEHHFLEKEKKSVETIITIAGFSFAGRGQNMGLAFVRLK 635

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                  P            K   ++       
Sbjct: 636 DWKLRPTPDMKAPAVAGRAMKAFSQIRDGLAFA 668



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 75/198 (37%), Gaps = 10/198 (5%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +      +  + K     + +    +T         E+++  I  V +  I M +++ 
Sbjct: 301 DTADRVKAKMAELSKYFPAGMEVVYPYDTTPFVKVSIEEVVQTLIEAVFLVFIIMFLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T+G  +  G   N   + A++ +IG  V+D +VV + + 
Sbjct: 361 ---NIRATLIPTIAVPVVLLGTMGALSAAGFSINTLTMFALVIVIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF-ISVLPMAVWGGSV---IGSFAIPM 801
               +    +S  D   KS+ +     ++          LPMA +GGS       F+I +
Sbjct: 417 -ERIMSEEGLSPHDATVKSMGQITSA-LWGIATVLSAVFLPMAFFGGSTGVIYRQFSITI 474

Query: 802 AFGIVVAASSSIFIAAPI 819
              ++++  ++  +   +
Sbjct: 475 ISAMILSVMTAQILTPAL 492



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 69/218 (31%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              +  Q  PG S  +  V                         +  ++      + +++ 
Sbjct: 827  VEIMGQAAPGVSTGEAMVEMEKMAAQLPPGIGYEWTGLSYEEKQAGKQAPALYAISLLVV 886

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +++     +   W      +  L L +   +    L  +  ++     +LT +G S  +
Sbjct: 887  FLSVA---ALYESWTIPFVNLLMLPLGLVGAVTAVKLRMLPNDVYLQIGLLTTVGLSTKN 943

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++   ++  M          +    ++   L   + TS+A F   LP+A+    G + 
Sbjct: 944  AILIIQFIKDQMHQ---GHELVEATLTAVKIRLRPVIMTSLAFFFGTLPLALTKGAGAAA 1000

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +    +  G++ A    +       + +    AK  
Sbjct: 1001 QNAIGTAVTGGLLSATFIDLIFIPFFFVMVSKVFAKKK 1038


>gi|153004191|ref|YP_001378516.1| protein-export membrane protein SecF [Anaeromyxobacter sp. Fw109-5]
 gi|152027764|gb|ABS25532.1| protein-export membrane protein SecF [Anaeromyxobacter sp. Fw109-5]
          Length = 400

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/265 (28%), Positives = 129/265 (48%), Gaps = 5/265 (1%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                    +  + + G ++     +P     +++ +E   +G    +   G        
Sbjct: 118 VQAKFPVERWSFNPEIGDKIDFEFKQPPSPQALQAAVEGAGVGVREVRAEQGLAAGTRSF 177

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                    +            +       +  E VGP + REL  +G   V+ +   ++
Sbjct: 178 AVITQGIREKIERDLSTHFAQAQPEV----RRVEYVGPAVGRELRNQGFKAVLYAMALIV 233

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +Y+ +RF + F+ G I  ++ D   TLG+FA  G EFNLT++A +LT++GYSVND VVVY
Sbjct: 234 VYVGLRFDFRFSPGVIIAILHDAIVTLGYFAFTGREFNLTSIAVLLTVVGYSVNDTVVVY 293

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           DR+R+N   Y    S  ++++ SINETLGR+  TS A  +S++ + V+G   +  F+  M
Sbjct: 294 DRIRENQAKY-KGKSLAEIVNLSINETLGRTFLTSFATALSLVGLLVYGVGTLFDFSAAM 352

Query: 802 AFGIVVAASSSIFIAAPILLFIYDW 826
             GIV    S+ FIAAP+ ++  + 
Sbjct: 353 LVGIVSGTYSTWFIAAPMTIWFEER 377


>gi|170720211|ref|YP_001747899.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           putida W619]
 gi|169758214|gb|ACA71530.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida W619]
          Length = 1050

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/687 (10%), Positives = 192/687 (27%), Gaps = 39/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AISVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMTKDDLANYIVSNMQDSISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L +   T   +       N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNKFQLTPVDVRTAVAAQNVQVSSGQLGGLPAMPGTQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNSDGSQVRLRDVAQVGLGGENYAISA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T        + L     P    +           S S 
Sbjct: 280 QFNGKPASGLAVKLATGANALDTATALRKTISDLEPFFPPGVKAVFPYDTTPVVTESISG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINPLSRF 531
           GG      R F+IT+  ++ +S+  A+    A+   +++  K       KS      +R 
Sbjct: 460 GGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPLKKGEHHVAKSGFFGWFNRN 519

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           F        + +          +L     +  +          F      GVL  +    
Sbjct: 520 FDRSVNGYERSVGTILRNKVPFLLGYALIVVGMIWLFTRIPTAFLPEEDQGVLFAQVQTP 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +   +    + I  +     + E + +  +    G + A       +   + +     + 
Sbjct: 580 AGSSAERTQVVIDQMREYLLEDEADTVSSVFTVNGFNFAGRGQSSGMAFIMLKPWDERSK 639

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI 678
           +N+     + +++        ++ +  
Sbjct: 640 ENSVFGLAERAQQHFFSFRDAMVFAFA 666



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 87/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   IS Q      + L        +++     L      +    
Sbjct: 258 SQVRLRDVAQVGLGGENYAISAQFNGKPASGLAVKLATGANALDTATALRKTISDLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   I  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +   
Sbjct: 436 EQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPLKK 502



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 70/185 (37%), Gaps = 10/185 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            E + +       L         G     +L    +  +  +   + +++    +   W  
Sbjct: 837  EAMAEVERIAGELPDGIGYSWTGMSYEEKLSGSQMPAL-FALSVLFVFLCLAALYESWSI 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  + L I   L   +L G+  ++  +  +LT IG +  + +++ +  ++   L+ 
Sbjct: 896  PIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKE---LHE 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
               S  D   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A 
Sbjct: 953  QGKSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTISSGAGAGSQHAIGTGVIGGMISAT 1012

Query: 810  SSSIF 814
              +IF
Sbjct: 1013 VLAIF 1017


>gi|317484714|ref|ZP_07943615.1| protein-export membrane protein SecF [Bilophila wadsworthia 3_1_6]
 gi|316924070|gb|EFV45255.1| protein-export membrane protein SecF [Bilophila wadsworthia 3_1_6]
          Length = 368

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 161/346 (46%), Gaps = 49/346 (14%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPVD 590
            +      I F+  R +  G+S L  +  +  +F +G   YG+DF GG  + +   +PV 
Sbjct: 4   HIFSKQTKIDFVGMRHYAYGLSALLILVGLITIFMNGGLRYGVDFAGGAAVQLQFEKPVA 63

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              ++ +L  +++  ++ Q +  +    +     P  +    R   +   + +     ++
Sbjct: 64  DEDIKKSLAEMELPGLAIQQYGEDGRDYLVRFSTPNLTSEGIRSNILSSLEKSFAGNPAS 123

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--------------------- 689
           IQ  E+VGPK+  +L    +  +  + + + +YI  RF+                     
Sbjct: 124 IQRLEMVGPKVGADLRNAALEAMYFAILLITVYISGRFEQRWMIAALMAAVLGSAMYVMG 183

Query: 690 -------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                                      +ALGAI  L+ D+  TLG  A+ G E +L  +A
Sbjct: 184 FLGMDMVYRVIGALALTLLISWKLKLNYALGAIVGLLHDVLITLGLLAMMGKEIDLNIIA 243

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           A++TL+GYS+ND ++VYDR+R+N++           D+I+ S+N+TLGR++ TS    I+
Sbjct: 244 ALMTLVGYSLNDTIIVYDRIRENLQNQPEDNPAPLADIINLSVNQTLGRTIMTSATTLIA 303

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            L + + GG  I  FA+ M+ G+ +   SS+F++ PILL + D R 
Sbjct: 304 ALSLTILGGGAIHDFALTMSLGVFIGTFSSVFVSNPILLLLGDTRQ 349


>gi|146340963|ref|YP_001206011.1| preprotein translocase subunit SecF [Bradyrhizobium sp. ORS278]
 gi|146193769|emb|CAL77786.1| Protein-export membrane protein secF [Bradyrhizobium sp. ORS278]
          Length = 341

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 102/294 (34%), Positives = 161/294 (54%), Gaps = 2/294 (0%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            ++PD     F + R     IS   SI +I L FTHGLN GIDF+GG  L V A      
Sbjct: 29  RIVPDDTHFDFTQFRRISFPISAALSILAIVLFFTHGLNLGIDFRGGSLLEVRAKSGTAD 88

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                   S            G       L              E   K    I      
Sbjct: 89  IAGMRATLSTLGLGEVQLQQFGADTDASVLIRIAEQPGGDAAQQEAANKVKAAIGDSVEY 148

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  E+VGP++S E +  G++G++++ +++LIY+W RF+W FALGA+   + DI  T+GF 
Sbjct: 149 RRIEVVGPRVSGEFLAVGLLGLMLAIVSILIYLWFRFEWQFALGAMIANVHDIVLTIGFM 208

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           ++  ++F+LT++AA+LT++GYS+ND VV+YDR+R+ ++ Y   +    L+++SIN TL R
Sbjct: 209 SISQVDFDLTSIAALLTILGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLSR 267

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824
           S+ T +   +++L + ++GG  I SF   M FG ++V   +SIFIA+PIL+++ 
Sbjct: 268 SIITHVTVTLALLALLLFGGPAIHSFTAVMMFGVVLVGTYTSIFIASPILIYLG 321


>gi|327485704|gb|AEA80110.1| Protein-export membrane protein SecD [Vibrio cholerae LMA3894-4]
          Length = 612

 Score =  193 bits (490), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 151/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRA 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   S++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVSVQAMGND---AFEVKTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|71153533|sp|O31100|SRPB_PSEPU RecName: Full=Solvent-resistant pump membrane transporter SrpB
 gi|2605914|gb|AAD12176.1| inner membrane transporter protein [Pseudomonas putida]
          Length = 1049

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/691 (11%), Positives = 175/691 (25%), Gaps = 51/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G L        +  + ++P+                  + ++V  
Sbjct: 8   RPIFAWVLAIVAMLAGALSLA-----KMPISQYPNIAAPA-------------VSIQVSY 49

Query: 63  DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +Q       ++  S L              +  I ++F      +    +V  
Sbjct: 50  PGASAQTVQDTVVQVIEQQLSGLDGFRYMSAESASDGSMTIIVTFEQGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  + ++  L     +    ++             +    I  Q  D I   
Sbjct: 110 KLQLATPRLPEEVQRQGLRVVKYQMNFFLVMSLVDRSGKLDNFDLGNLIASQLQDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   ++      N        G    R   
Sbjct: 170 PGVGDFQLFGSP-YAMRIWLDPGKLNSYQLTPTDVASAIREQNVQVSSGQLGGLPTRSGV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K  ++                +    +        +                
Sbjct: 229 QLNATVLGKTRMT-------------TPSQFDEILVKVNPDGSQVRVKDVGRAELGADSF 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T++    L    +A        I           
Sbjct: 276 AISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYLPDGVEVIYPYDTTPVVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ALL   G  + + ++
Sbjct: 336 SIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLLATFALLPYFGLNINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 YAMVLAIGLLVDDAIVVVENVERLMHDEGLSPLEATRKSMDQISGALVGIGMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      + FAIT+ + + +S+  A+    A+ + I           R       
Sbjct: 456 MAFFGGSAGIIYQQFAITIVVCMGLSILVALVFTPALCVTILKAPEGNSHHERKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +         + +   ++                  + +G + + V
Sbjct: 516 NRIFDRGTRRFERGVGAMLKGRGRYLLAFLLITGGTGYLFTQIPKAFLPNEDQGLMMIEV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L+ ++    + +    E    V      G       VL   K    
Sbjct: 576 RTPANASAERTEGVLQEVRDYLANDEGALVEHFMTVNGFNFAGRGQNSGLVLITFKDWKE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                  + +      +   ++    ++  +
Sbjct: 636 RHGAGQDVFSIAQRANQHFAKIKDASVMAFV 666



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V           IS Q  D     L       G+ +     ++ + ++    +
Sbjct: 258 SQVRVKDVGRAELGADSFAISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P             +    I   +  +  + + + + +++    +   L     + + + 
Sbjct: 318 PDGVEVIYPYDTTPVVEASIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T      FG+  N+  + A++  IG  V+D +VV + +     ++   +S  +   KS+
Sbjct: 378 ATFALLPYFGLNINVLTMYAMVLAIGLLVDDAIVVVENV--ERLMHDEGLSPLEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  V   M      +PMA +GGS   +   FAI +   + ++   ++     + + 
Sbjct: 436 DQISGALVGIGMVLSAVFVPMAFFGGSAGIIYQQFAITIVVCMGLSILVALVFTPALCVT 495

Query: 823 IYD 825
           I  
Sbjct: 496 ILK 498



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 78/259 (30%), Gaps = 10/259 (3%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +     + V  S   +         +         N L           
Sbjct: 778  RISPEDFDKWYVRNSLGQMVPFSAFATGEWVNGSPKLERYGGISSLNILGEPAPGYSTGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   + E++++    I    T  + E +       L+       +   I  L    +   
Sbjct: 838  AMIAIAEIMQQLPAGIGLSYTGLSYEEIQTGDQAPLLYA-----LTVLIVFLCLAALYES 892

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W   +  I  + L I   +       +  ++     ++T +G S  + +++ +  ++  +
Sbjct: 893  WSVPVSVIMVVPLGILGAVLATLWRDLTADVYFQVGLMTTVGLSAKNAILIVEFAKELYE 952

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                         ++    L   + TS+A    VLPMA+    G     S A  +  G++
Sbjct: 953  KE--GYPIVKAAIEAAKLRLRPILMTSLAFTFGVLPMAIASGAGAGSQHSIATGVVGGMI 1010

Query: 807  VAASSSIFIAAPILLFIYD 825
             A   ++F      + +  
Sbjct: 1011 TATVLAVFFVPLFYVVVVK 1029


>gi|261342743|ref|ZP_05970601.1| multidrug resistance protein MdtF [Enterobacter cancerogenus ATCC
           35316]
 gi|288315396|gb|EFC54334.1| multidrug resistance protein MdtF [Enterobacter cancerogenus ATCC
           35316]
          Length = 1037

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/684 (10%), Positives = 183/684 (26%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G L  L     +  + ++P+  P                     
Sbjct: 7   QRPVFAWVLAIILMIAGGLAIL-----KLPVAQYPTIAPPAV---------AVTATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     N  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGNVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D       + S  +     D I  +   
Sbjct: 113 LAMPLLPQEVQQQGIGVEKSSSSFLLVAGFVSDNKSLSQDDISDYVASNVKDAISRTSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + + +   T   +       NN       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDSNAMNKYQLTPLDVINQLKTQNNQIAAGQLGGTPSIPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KSPEEFGRVTLKVNPDGSMVHLKDVARIELGGENYNMV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                +   T        A L+         +           S  
Sbjct: 279 TKINGQAATGLGIKLATGANALDTAAAIKSKLAQLQPFFPQGLRVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAILAAFGFSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     +++     +      +    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMVEDKLPPKEATQKSMEQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526
           FGG      R F++T+  ++ +S+  A+ +  A+   +           +       +  
Sbjct: 459 FGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCATLLKPVSGDHHEKKGGFFGWFNAL 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    + ++    +   + +   I+    ++  L         + +G     V   
Sbjct: 519 FDRSVDHYSNSVSGILRKTGRYLLVYLIIVGGMAVLFLRLPTSFLPEEDQGVFMTMVQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                   +  L+ +Q   ++ +  + E  F V      G           +K       
Sbjct: 579 AGATQMRTQKVLDQVQDYYLTKEKANVESVFTVNGFSFSGQGQNSGIAFVSLKPWEERPG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             + +        K   ++    +
Sbjct: 639 KENGVGAIVSRATKAFSQIKDGLV 662



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 83/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  ++  +        L        +++     ++    ++    
Sbjct: 258 SMVHLKDVARIELGGENYNMVTKINGQAATGLGIKLATGANALDTAAAIKSKLAQLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + I + + +++  +     L     + + + 
Sbjct: 318 PQGLRVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEDKLPPKEATQKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  +M      +PMA +GGS       F++ +   + ++   ++ +   +   
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 68/193 (35%), Gaps = 7/193 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G+S       E +    +    L      +  G      L       +  IS I + + +
Sbjct: 828  GESAPGKSTGEAMALMESLASKLPAGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L   +L G+  ++     +LT IG +  + +++ + 
Sbjct: 888  AALYESWSIPFSVMLVVPLGVIGALLAASLRGLNNDVYFQVGLLTTIGLAAKNAILIVEF 947

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  M          +   ++    L   + TS+A  + V+P+ +    G     +    
Sbjct: 948  AKDLMDKEGKG--IIEATLEASRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTG 1005

Query: 801  MAFGIVVAASSSI 813
            +  G++ A   +I
Sbjct: 1006 VMGGMLSATLLAI 1018


>gi|167835620|ref|ZP_02462503.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           thailandensis MSMB43]
          Length = 1066

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 65/574 (11%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       IT++FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTKLTNYGLTPVDVTTAISAQNVQIAGGQLGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITEATLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        +        +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSTYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNSSRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     +++   
Sbjct: 258 SQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSTYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 79/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMTAMEALAKKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+  +  T  +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARELQR--TEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 137/519 (26%), Gaps = 38/519 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLKQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  L++      I  + +    D  ++ +     + +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDSAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLQGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMTAMEALAKKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQRTEKMGPIEAALEAARLRLRPILMTSLAFILGVL 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             L      G  +       +   ++ + F AI ++    
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|78061148|ref|YP_371056.1| hydrophobe/amphiphile efflux pump, HAE1 [Burkholderia sp. 383]
 gi|77969033|gb|ABB10412.1| Hydrophobe/amphiphile efflux pump, HAE1 [Burkholderia sp. 383]
          Length = 1066

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDDRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   +   +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDVARIKLDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  L+   ++ +++I T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLAFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGMNARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+      G  +  +  + + FG+
Sbjct: 960  -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 90/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 252 IVVKTTPDGGVTHLRDVARIKLDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  +L 
Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+    + +
Sbjct: 371 PLIAVPVSIIGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ESGM 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           + R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 428 NARAATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 487 SLTLSPALSAILLK 500


>gi|307720506|ref|YP_003891646.1| protein translocase subunit secF [Sulfurimonas autotrophica DSM
           16294]
 gi|306978599|gb|ADN08634.1| protein translocase subunit secF [Sulfurimonas autotrophica DSM
           16294]
          Length = 323

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 165/294 (56%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                      FM      +  S +  + S  +L T GLNYGIDF GG  + V  +    
Sbjct: 1   MEFFKYSRTFDFMSKSKLAMLFSTILVLASYAILATKGLNYGIDFAGGTVVQVKYDTKAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R  L++ ++ D +  +  G  + +V        +   T+ +  V +++ +      
Sbjct: 61  IKAMREKLKANKLFDGASISEFGSPDEVVIR--MKTTTGNVTQDIGDVTREVLKGTGAFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  +IVGPK+  EL  KGI+ ++++ +++LIY+  RF+W FA+ +I  L+ D++  +G 
Sbjct: 119 VRRVDIVGPKVGSELKEKGIMSLVLAILSILIYVAFRFEWRFAVASIVALVHDVSIAMGA 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            ALF I+ NL  +AA+LTL+GYS+ND ++V+DR+R+ +   +   +  ++I++SI  TL 
Sbjct: 179 VALFAIDVNLDVLAAILTLLGYSLNDTIIVFDRIREGITK-SKKANLTEIINESITRTLA 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R+  TS+  F  V  + ++GG +I +FA  +  GI+V   SSIF+A+PIL+F  
Sbjct: 238 RTTLTSLTTFFVVFTLFMFGGEIIHAFAFTLLVGIIVGTYSSIFVASPILIFFG 291


>gi|221369327|ref|YP_002520423.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodobacter sphaeroides KD131]
 gi|221162379|gb|ACM03350.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodobacter sphaeroides KD131]
          Length = 1039

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/622 (11%), Positives = 173/622 (27%), Gaps = 37/622 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L  L     +  + ++PS  P   +                  
Sbjct: 8   RPVFAWVIAIVIMALGVLSIL-----RLPVSQYPSIAPPAVV---------IGATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +   + L        S       +ITL+F      +    +V   L  
Sbjct: 54  AETVTDTVTQVIEREMTGLDGLRYISSSSTSTGVAQITLTFELGTDPDIAQVQVQNKLSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L     +  +         +++     D     A E +  +    ++ I       
Sbjct: 114 AQALLPQAVVRQGVTVRKSSAGFLMVIAMTSDNGAYSASELADYMSSNMVESISRLPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     + + ++      N       FG R   +    Q 
Sbjct: 174 SVQVFGSQ-HAMRIWLDPNKLNAYDLSPSDVTAAVSAQNAQISAGSFGARPAPEGQQLQA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      +   E             +           
Sbjct: 233 TITAQSLL-------------QTPEDFEQIVLRAETDGGLVLLRDVARVELGAQSYEIDG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T +        L A         V          S   
Sbjct: 280 RYNRSPASGMAIQLASGANALDTADVVRAKVDELAAFFPEGMTYEVPYDTTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  L+   ++ + ++ T  +++ LG ++   ++  +V
Sbjct: 340 VVKTLIEAIVLVVLVMLLFLQNIRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     +       +           +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFL 533
           G   G   + F+IT+  ++ +S+  A+++  A+   I++     +               
Sbjct: 460 GGSTGEIYKQFSITIVSAMALSVLVALTLTPALCATILKRGHHSARRGPVGWFNRGFDAT 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 +     R   + + +   I +  +                 + +   +    + 
Sbjct: 520 TRGYGGLVGRVVRRPVLMMVLFGVIVAGMVTLFQRTPTAFLPDEDQGVLITLIQTPSGAT 579

Query: 594 VRSNLESLQIGDISFQNFDGEK 615
               L +++  +  +   +GE 
Sbjct: 580 AERTLAAIKEVENYWLEKEGEN 601



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 5/140 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G  A  G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 IRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMVLAIGLLVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           +    +       KS++E  G  V  +M      +PMA +G   G +   F+I +   + 
Sbjct: 420 MEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFFGGSTGEIYKQFSITIVSAMA 479

Query: 807 VAASSSIFIAAPILLFIYDW 826
           ++   ++ +   +   I   
Sbjct: 480 LSVLVALTLTPALCATILKR 499



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 72/252 (28%), Gaps = 15/252 (5%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   D     ++       V LS             ++  N         +      
Sbjct: 772  PWARTDPDDLDLWRIPNKDGEFVALSTFADQTWFYGPQQVARYNAVRSMEIQGQPVPGIS 831

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   +  +  +         T  + E         L+       ++S  A+ + +  
Sbjct: 832  SGEAMAEMERLAAQLPPGFALEWTGLSLEEREAGDQASLL------FLLSVGAVFLCLAA 885

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIGYSVNDKVVVYDRM 744
             ++ W   +  +  + + I   L   A  G + N       +LT++G +  + +++ +  
Sbjct: 886  LYESWSVPIAVLLAMPVGILGAL-LGAWAGHQANGVYFQVGLLTVVGLTGKNGIMIVEFA 944

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
            R             + I  +        + TS+A  + V+P+ +    G     +    +
Sbjct: 945  R---SRLAQGEPLLEAIRHAAVLRFRPILMTSLAFSLGVVPLVLSTGAGAGARRAIGDGI 1001

Query: 802  AFGIVVAASSSI 813
              G +      I
Sbjct: 1002 LGGTITGTLLGI 1013


>gi|126464782|ref|YP_001045895.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126106593|gb|ABN79123.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodobacter sphaeroides ATCC 17029]
          Length = 1039

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/622 (11%), Positives = 173/622 (27%), Gaps = 37/622 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L  L     +  + ++PS  P   +                  
Sbjct: 8   RPVFAWVIAIVIMALGVLSIL-----RLPVSQYPSIAPPAVV---------IGATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +   + L        S       +ITL+F      +    +V   L  
Sbjct: 54  AETVTDTVTQVIEREMTGLDGLRYISSSSTSTGVAQITLTFELGTDPDIAQVQVQNKLSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L     +  +         +++     D     A E +  +    ++ I       
Sbjct: 114 AQALLPQAVVRQGVTVRKSSAGFLMVIAMTSDNGAYSASELADYMSSNMVESISRLPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     + + ++      N       FG R   +    Q 
Sbjct: 174 SVQVFGSQ-HAMRIWLDPNKLNAYDLSPSDVTAAVSAQNAQISAGSFGARPAPEGQQLQA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      +   E             +           
Sbjct: 233 TITAQSLL-------------QTPEDFEQIVLRAETDGGLVLLRDVARVELGAQSYEIDG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T +        L A         V          S   
Sbjct: 280 RYNRSPASGMAIQLASGANALDTADVVRAKVDELAAFFPEGMTYEVPYDTTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  L+   ++ + ++ T  +++ LG ++   ++  +V
Sbjct: 340 VVKTLIEAIVLVVLVMLLFLQNIRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     +       +           +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFL 533
           G   G   + F+IT+  ++ +S+  A+++  A+   I++     +               
Sbjct: 460 GGSTGEIYKQFSITIVSAMALSVLVALTLTPALCATILKRGHHSARRGPVGWFNRGFDAT 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 +     R   + + +   I +  +                 + +   +    + 
Sbjct: 520 TRGYGGLVGRVVRRPVLMMVLFGVIVAGMVTLFQRTPTAFLPDEDQGVLITLIQTPSGAT 579

Query: 594 VRSNLESLQIGDISFQNFDGEK 615
               L +++  +  +   +GE 
Sbjct: 580 AERTLAAIKEVENYWLEKEGEN 601



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 5/140 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G  A  G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 IRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMVLAIGLLVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           +    +       KS++E  G  V  +M      +PMA +G   G +   F+I +   + 
Sbjct: 420 MEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFFGGSTGEIYKQFSITIVSAMA 479

Query: 807 VAASSSIFIAAPILLFIYDW 826
           ++   ++ +   +   I   
Sbjct: 480 LSVLVALTLTPALCATILKR 499



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 72/252 (28%), Gaps = 15/252 (5%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   D     ++       V LS             ++  N         +      
Sbjct: 772  PWARTDPDDLDLWRIPNKDGEFVALSTFADQTWFYGPQQVARYNAVRSMEIQGQPVPGIS 831

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   +  +  +         T  + E         L+       ++S  A+ + +  
Sbjct: 832  SGEAMAEMERLAAQLPPGFALEWTGLSLEEREAGDQASLL------FLLSVGAVFLCLAA 885

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIGYSVNDKVVVYDRM 744
             ++ W   +  +  + + I   L   A  G + N       +LT++G +  + +++ +  
Sbjct: 886  LYESWSVPIAVLLAMPVGILGAL-LGAWAGHQANGVYFQVGLLTVVGLTGKNGIMIVEFA 944

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
            R             + I  +        + TS+A  + V+P+ +    G     +    +
Sbjct: 945  R---SRLAQGEPLLEAIRHAAVLRFRPILMTSLAFSLGVVPLVLSTGAGAGARRAIGDGI 1001

Query: 802  AFGIVVAASSSI 813
              G +      I
Sbjct: 1002 LGGTITGTLLGI 1013


>gi|317122084|ref|YP_004102087.1| protein-export membrane protein SecF [Thermaerobacter marianensis
           DSM 12885]
 gi|315592064|gb|ADU51360.1| protein-export membrane protein SecF [Thermaerobacter marianensis
           DSM 12885]
          Length = 295

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 151/287 (52%), Gaps = 7/287 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                F+R+R     +S+L     +      GLNY ++F GG    +   +PV+   +RS
Sbjct: 1   MTGFSFVRSRGVAFALSLLLLAAGMVAWAVRGLNYNVEFTGGTAWTLRFEKPVEAGAIRS 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L    + D   Q  +  +   +R  +            + V + + + V    ++  + 
Sbjct: 61  VLAEQGLDDAIVQLSEEGRVAFLRTPHVD------QATQQKVLEALGKDVAPVQLEQFDS 114

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           + P I RE+  KG++ + ++ + M++Y+ +RF+++FA+ AI  ++ D+   +G FAL   
Sbjct: 115 ISPVIGREIKEKGLLALGLATVGMIVYMTVRFEFWFAVAAILAMLHDVFMVVGLFALLQW 174

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           + + + +AA+LT+ GYS+ND VVV+DR+R+N++L        +L+D+SI + L RS+ T 
Sbjct: 175 QVDASFIAALLTVFGYSINDTVVVFDRIRENLRL-RRKEPLDELVDRSIRQVLRRSILTG 233

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               +++  +  +GG  I +F+  M FGI     SSIF+A+P+   +
Sbjct: 234 TTTLLALAAVFAFGGETIRAFSGAMFFGIFFGTYSSIFVASPLWYVL 280


>gi|311693824|gb|ADP96697.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [marine
           bacterium HP15]
          Length = 1034

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/622 (12%), Positives = 186/622 (29%), Gaps = 38/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL      L    ++ +P   P          +   +  L    
Sbjct: 9   RPKFAFVISILITLAGLLA-----LRILPVNMYPDMAPP---------QIQVNASLPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++       +       KITL+F      +     V   +  
Sbjct: 55  SQVVEEAVIRPVEQQLNGVEGMIYIESTASSDGTAKITLTFESGTDTDIAQVNVQNRVAL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +V + +    ++      ++     +  S       ++ +G      
Sbjct: 115 AEPFLPDEVRRQGVVVSKQAGNMLMGINLTSERPDLDGVFLSNYASNNLVEALGRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP R+  L  T A+++      N        G   +       Y
Sbjct: 175 SAEVMGAKDYSMRVWLDPRRMASLDVTVAEVAAALREQNQIVAAGKLGQPPVPAGQQFVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +S                +    I                 I           
Sbjct: 235 SIQTRERLS-------------DPDEFAQTILRSRPDGGFVRLRDVGRIELGSRSYTSTA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +       +     E    L               V          S S 
Sbjct: 282 KLNNQDTAFLVIYQLPDANALEVAERVKALVEEASVSFPAGVNYTVLYDTTEFISRSISE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T     GLV++V+F+ +   +  L+   +I +++I T A++S+LG ++   ++ G+V
Sbjct: 342 VIVTLFQAVGLVILVVFLFLQNWRATLIPSIAIPVSLIGTFAVMSVLGYSINTITLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +   +  ++    +     +  + +  L   V + F 
Sbjct: 402 LAIGIVVDDAIVVIENVERILAEEKLPIREAVTKAMAEVTGPVIATTLVLLAVFVPVAFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + F++T+ ++++IS   A+++  A+ + ++     K+I         +    
Sbjct: 462 PGITGKLYQQFSVTISVAVIISSINALTLSPALCVALLGRSGDKAIGWLRPFEVAITRTT 521

Query: 538 IAIQF------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                       +    GV ++++    +             + +G + + V       L
Sbjct: 522 SGYSKLVVQLLRKGALVGVALAVILVAGAGLFKSVPSAFVPPEDQGFLFVDVQLPDAASL 581

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
               + L  +    +       
Sbjct: 582 ERTEAVLTKVTDMVLEDPAVTD 603



 Score = 85.9 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 80/225 (35%), Gaps = 9/225 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                  L            V E VK  + E            V    +  + R     +
Sbjct: 284 NNQDTAFLVIYQLPDANALEVAERVKALVEEASVSFPAGVNYTVLYDTTEFISRSISEVI 343

Query: 674 IISAIAMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           +    A+ + I + F     W   L     + + +  T    ++ G   N   +  ++  
Sbjct: 344 VTLFQAVGLVILVVFLFLQNWRATLIPSIAIPVSLIGTFAVMSVLGYSINTITLFGLVLA 403

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + +     L    +  R+ + K++ E  G  + T++      +P+A  
Sbjct: 404 IGIVVDDAIVVIENV--ERILAEEKLPIREAVTKAMAEVTGPVIATTLVLLAVFVPVAFM 461

Query: 790 GGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G        F++ ++  +++++ +++ ++  + + +       A
Sbjct: 462 PGITGKLYQQFSVTISVAVIISSINALTLSPALCVALLGRSGDKA 506



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 79/223 (35%), Gaps = 9/223 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            ++F ++         A           + E+              +  +E+    + GVI
Sbjct: 812  QHFNLKRSVTISGEAAPGFASGDAIATMEELSQSLPQGYEFSWAGQSLQEIQAGNLAGVI 871

Query: 675  ISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
                 + +Y+++      W   +  +  + L +   +    L G+  N+ A   ++ LIG
Sbjct: 872  FLLALVFVYLFLVAQYESWTLPVAVLGAVPLALAGAMAGLWLVGLANNIYAQVGLVLLIG 931

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
             S    +++ +     M+L  + +S  +   K+        + T+++  + VLP+     
Sbjct: 932  LSTKTAILIVEFA---MQLRQSGMSTAEAAQKAAVLRFRAVLMTALSFVLGVLPLVFASG 988

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G +   S  I +  G+V A      +      +I   R +  
Sbjct: 989  AGAASRVSLGITVLSGMVAATVLGTLLVPVFYKWIQSVRDRRQ 1031


>gi|254227758|ref|ZP_04921189.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Vibrio sp. Ex25]
 gi|151939800|gb|EDN58627.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Vibrio sp. Ex25]
          Length = 1050

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/692 (11%), Positives = 182/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPQISPP-------------SVSVSAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           ++   +          +    DP ++  L  TT+ +       N        G     + 
Sbjct: 170 AKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYAALAEQNVQVAAGRVGAAPYNNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANPNGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGNGKFRGQDASIVALSLQSDANALESGQAVMELLEDLSKNFPEGMAYETSYDTTVFVS 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATLLAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           I   +L    G   R FA+T+ +S++IS   A+++  A+   +            ++ + 
Sbjct: 457 IPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTANWFQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  +     T       + KG + + V  
Sbjct: 517 GLERITTRYGQVAGFLVKKSLLLVTFFIVAIAAVTFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     V   +    T  
Sbjct: 577 PDSASLSRTEEVTNDLMNMIGEEPGVDGVTVANGYSFMTGAAASNGASVFIKLHDWDTRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                     I      R         V+ + 
Sbjct: 637 SLQGEHSANAIAARINGRAATE-LPQAVVFAM 667



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 86/235 (36%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D + +    + + +        +++   + +  + + +++  P 
Sbjct: 262 VYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESGQAVMELLEDLSKNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GMAYETSYDTTVFVSESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         +IS R     ++ E
Sbjct: 382 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLLAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      +P+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/447 (11%), Positives = 116/447 (25%), Gaps = 26/447 (5%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            L+      P + G+ +  G +  +    +       + +     +   G   A +     
Sbjct: 592  LMNMIGEEPGVDGVTVANGYSFMTGAAASNGASVFIKLHDWDTRNSLQGEHSANAIAARI 651

Query: 467  NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
            N      +   V+F  G  AV G     G   ++      S   +   M   I    +  
Sbjct: 652  NGRAATELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLSMVMGEMIQAANQAP 711

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             I     +    +P                            L +  +N    F    ++
Sbjct: 712  EIAYTFSTFRANVPHYYVDIDREKAQQLGISLSSIFQTLQGNLGSLYVNDFTIFGKNFRV 771

Query: 582  GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + A+              V  S       S  +        D    + +          
Sbjct: 772  TMQADSQHRSSMEDLERFHVRSSNGDMVPLSTLVSYEQVFEPDVAWRYNMYRSAIIQGQP 831

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
            A           +  +      Q        ++ + +  G   +   +   + IY   + 
Sbjct: 832  APGYSSGDAIAAMERVAAEVLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   L  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892  QYESWSIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
            +  +             K           TS +  + + P+    G+      S  + + 
Sbjct: 952  QEREE--KDADIDSAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGVSLI 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++    +  F+       +   R K
Sbjct: 1010 GGLLCVLLAGTFLIPGFYALVQRQREK 1036


>gi|288817990|ref|YP_003432337.1| protein-export membrane protein [Hydrogenobacter thermophilus TK-6]
 gi|288787389|dbj|BAI69136.1| protein-export membrane protein [Hydrogenobacter thermophilus TK-6]
 gi|308751589|gb|ADO45072.1| protein-export membrane protein SecD [Hydrogenobacter thermophilus
           TK-6]
          Length = 497

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 154/485 (31%), Positives = 263/485 (54%), Gaps = 18/485 (3%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             ++LGLDL+GG  ++LE D D  +    + Y+ ++   L+  GI V  +   ++ I + 
Sbjct: 25  KPVNLGLDLKGGISMLLEPDMDYALTQEYERYAKDIERKLRDAGINVLDVTSDKSGIKVE 84

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
             D +  ++I+  V+            D  +  +V+  + ++ I L  + I ++      
Sbjct: 85  VLDKKDIDSISQMVSK-----------DFPRFEVVSREKGQVLIKLKDDEIKKLKDSIAG 133

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV---- 217
           Q++E++R+RID++G+ +  I ++   R+L++LPG  D  + + ++G TA +    V    
Sbjct: 134 QTVEVLRRRIDELGVVQPVITKVSGDRVLVELPGVLDIDKAKSIIGKTALLELKLVVGSG 193

Query: 218 -LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
                 +K           +    +LVE    I+G  L  A  + D     P V     +
Sbjct: 194 PKEVLEQKLNKDTELLPSRNPQEWFLVEKLPVITGADLKTAYTSTDEFG-APAVTFELTD 252

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR F + T  NIG+ LA+VLD +V++APVI     + + QI+G FT E A  LA +LR
Sbjct: 253 RGARAFGDATEKNIGRRLAIVLDKKVMSAPVIRS-RITDRGQITGQFTPEEAKELAIVLR 311

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP  +  ++E  VG  LG D+I +   A + G +L+V  ++  Y   G+ A+ +I L
Sbjct: 312 AGALPTNVKFLQETVVGPSLGRDAINQSIKAGIVGFILLVALLLGRYKVAGITANLAILL 371

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N +   A L LLGATLTLP IAGI+L +G+AVDSN+L+ ER++EE R   S   ++++G+
Sbjct: 372 NALFLWAGLVLLGATLTLPGIAGILLNMGIAVDSNVLIFERVKEELRSGSSPKKAVELGY 431

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            R+ S ++D++IT LIA ++LF FG G V+GFA T+ +  + S  + +   +  +  + +
Sbjct: 432 RRSLSVVWDTHITLLIAALILFQFGSGPVKGFATTLTIGSIASFVSNVYFTKFFLDVLTK 491

Query: 517 YKKMK 521
              +K
Sbjct: 492 IGALK 496



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 76/173 (43%), Gaps = 4/173 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
              +VGP + R+ I + I   I+  I ++  +  R+K    + A   ++L+         
Sbjct: 323 QETVVGPSLGRDAINQSIKAGIVGFILLVALLLGRYKV-AGITANLAILLNALFLWAGLV 381

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G    L  +A +L  +G +V+  V++++R+++ ++   +  S +  ++     +L   
Sbjct: 382 LLGATLTLPGIAGILLNMGIAVDSNVLIFERVKEELR---SGSSPKKAVELGYRRSLSVV 438

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             T +   I+ L +  +G   +  FA  +  G + +  S+++     L  +  
Sbjct: 439 WDTHITLLIAALILFQFGSGPVKGFATTLTIGSIASFVSNVYFTKFFLDVLTK 491


>gi|332560925|ref|ZP_08415243.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rhodobacter
           sphaeroides WS8N]
 gi|332274723|gb|EGJ20039.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 1039

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/622 (11%), Positives = 173/622 (27%), Gaps = 37/622 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L  L     +  + ++PS  P   +                  
Sbjct: 8   RPVFAWVIAIVIMALGVLSIL-----RLPVSQYPSIAPPAVV---------IGATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +   + L        S       +ITL+F      +    +V   L  
Sbjct: 54  AETVTDTVTQVIEREMTGLDGLRYISSSSTSTGVAQITLTFELGTDPDIAQVQVQNKLSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L     +  +         +++     D     A E +  +    ++ I       
Sbjct: 114 AQALLPQAVVRQGVTVRKSSAGFLMVIAMTSDNGAYSASELADYMSSNMVESISRLPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     + + ++      N       FG R   +    Q 
Sbjct: 174 SVQVFGSQ-HAMRIWLDPNKLNAYDLSPSDVTAAVSAQNAQISAGSFGARPAPEGQQLQA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      +   E             +           
Sbjct: 233 TITAQSLL-------------QTPEDFEQIVLRAETDGGLVLLRDVARVELGAQSYEIDG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T +        L A         V          S   
Sbjct: 280 RYNRSPASGMAIQLASGANALDTADVVRAKVDELAAFFPEGMTYEVPYDTTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  L+   ++ + ++ T  +++ LG ++   ++  +V
Sbjct: 340 VVKTLIEAIVLVVLVMLLFLQNIRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     +       +           +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFL 533
           G   G   + F+IT+  ++ +S+  A+++  A+   I++     +               
Sbjct: 460 GGSTGEIYKQFSITIVSAMALSVLVALTLTPALCATILKRGHHTARRGPVGWFNRGFDAT 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 +     R   + + +   I +  +                 + +   +    + 
Sbjct: 520 TRGYGGLVGRVVRRPVLMMVLFGVIVAGMVTLFQRTPTAFLPDEDQGVLITLIQTPSGAT 579

Query: 594 VRSNLESLQIGDISFQNFDGEK 615
               L +++  +  +   +GE 
Sbjct: 580 AERTLAAIKEVENYWLEKEGEN 601



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 5/140 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G  A  G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 IRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMVLAIGLLVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           +    +       KS++E  G  V  +M      +PMA +G   G +   F+I +   + 
Sbjct: 420 MEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFFGGSTGEIYKQFSITIVSAMA 479

Query: 807 VAASSSIFIAAPILLFIYDW 826
           ++   ++ +   +   I   
Sbjct: 480 LSVLVALTLTPALCATILKR 499



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 72/252 (28%), Gaps = 15/252 (5%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   D     ++       V LS             ++  N         +      
Sbjct: 772  PWARTDPDDLDLWRIPNKDGEFVALSTFADQTWFYGPQQVARYNAVRSMEIQGQPVPGIS 831

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   +  +  +         T  + E         L+       ++S  A+ + +  
Sbjct: 832  SGEAMAEMERLAAQLPPGFALEWTGLSLEEREAGDQASLL------FLLSVGAVFLCLAA 885

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIGYSVNDKVVVYDRM 744
             ++ W   +  +  + + I   L   A  G + N       +LT++G +  + +++ +  
Sbjct: 886  LYESWSVPIAVLLAMPVGILGAL-LGAWAGHQANGVYFQVGLLTVVGLTGKNGIMIVEFA 944

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
            R             + I  +        + TS+A  + V+P+ +    G     +    +
Sbjct: 945  R---SRLAQGEPLLEAIRHAAVLRFRPILMTSLAFSLGVVPLVLSTGAGAGARRAIGDGI 1001

Query: 802  AFGIVVAASSSI 813
              G +      I
Sbjct: 1002 LGGTITGTLLGI 1013


>gi|332535605|ref|ZP_08411373.1| protein-export membrane protein SecF [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332034989|gb|EGI71510.1| protein-export membrane protein SecF [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 314

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/282 (29%), Positives = 150/282 (53%), Gaps = 2/282 (0%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R RF G+ +S +  + S+  L   GLN+G+DF GG       ++ V+L  ++S +     
Sbjct: 13  RLRFIGMLLSAMLVLLSVFTLTQKGLNFGLDFTGGYLTEFTTSQSVELKELQSFIAKNHN 72

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
           G+       G  +F +R       +       +            + + ++  +G ++  
Sbjct: 73  GEFELT-AQGNSHFQLREAPSASTTSTTANSPDWQSAVTQNDDINAQVLSSAYIGSQVGD 131

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + +  + IA++IY+ +RF+W  A+G++  L+ D+   LG F+L  IEFNLT +
Sbjct: 132 ELFDQGCLAMFAAMIAVMIYLAVRFEWRLAVGSVVALVHDLILVLGLFSLLQIEFNLTVL 191

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRSVYTSMAAFIS 782
           A++L +IGYS+ND ++V DR+R+ +++ + + +S   +I+ +I  TL R++ TS     +
Sbjct: 192 ASLLAIIGYSLNDSIIVGDRVRELLRVQSNNVLSPATIINNAIKSTLTRTLITSGTTLAT 251

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           V  + +  G+ +  FAI +  GIVV   SSI IAA +   + 
Sbjct: 252 VASVWLLAGAPLQGFAIALFTGIVVGTFSSICIAATLPELLG 293


>gi|294138917|ref|YP_003554895.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
 gi|293325386|dbj|BAJ00117.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
          Length = 1047

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/691 (10%), Positives = 178/691 (25%), Gaps = 51/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L           + ++PS  P               +V+    
Sbjct: 8   RPIFAWVIAIIVMLAGVLSIF-----GLPVSQYPSIAPPT-------------VVISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S      +ITL+F      +    +V  
Sbjct: 50  PGASAKTMEDSVTQVIEQRMTGIDNLRYISSTSDSFGNAQITLTFNAEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + +   +         +++             + +  +     D +   
Sbjct: 110 KLQLAMPLLPQEVQAQGVKVNKSSSGFLMVLGFVSKDGSLDKNDIADYVASNIQDPMSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L Q   T+  +       N        G        
Sbjct: 170 TGIGEIQLFGAQ-YAMRIWLDPLKLTQYKLTSIDIMASIREQNAQISAGQLGGSPSVGGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +      +      I       
Sbjct: 229 ELNATVSAQSRL-------------QTPEQFEQIIIKSDSSGANVYLKDVAKIELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          ++         +           
Sbjct: 276 AVESFYNGKPAAGLAVKLATGANALATANAVRAKIEEMKPFFPQGIEVVYPYDTTPFVEQ 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  L+   ++ + ++ T A+LS +G ++   ++
Sbjct: 336 SIEGVVHTLFEAVILVFLIMYLFLQNLRATLIPTIAVPVVLLGTFAILSAVGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLSPVEATKKSMDQITGALVGIGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + F  G      R F++T+  ++ +S+  A+ +  A+   +          I        
Sbjct: 456 MAFMSGSTGVIYRQFSVTIVAAMGLSVMVALILTPALCATMLKPMKKGQTHINTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +         D +A    R     +    L        +         + +G +    
Sbjct: 516 NRSFDKLTSRYTDSVAAMIKRTGRVMLIYLALVVAVGWIFMRMPTAFLPDEDQGIMFTQA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +          +  +E +    ++ ++ + E  F V      G           +K    
Sbjct: 576 ILPVNSTQESTQKVMEKVTDFYLNEESENVESVFSVSGFSFAGSGQNMGIAFVSLKDWTE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                  +++          ++    +   +
Sbjct: 636 RKGAGQDVKSVAARAMGKFMQMKEAFVFAFV 666



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 81/250 (32%), Gaps = 6/250 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       +   +           L        +++A    +    +++ 
Sbjct: 255 SSGANVYLKDVAKIELGAESYAVESFYNGKPAAGLAVKLATGANALATANAVRAKIEEMK 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  +  + I + + +++  +     L     + +
Sbjct: 315 PFFPQGIEVVYPYDTTPFVEQSIEGVVHTLFEAVILVFLIMYLFLQNLRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    +  G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAILSAVGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPVEATK 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F++ +   + ++   ++ +   +
Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSVTIVAAMGLSVMVALILTPAL 492

Query: 820 LLFIYDWRAK 829
              +     K
Sbjct: 493 CATMLKPMKK 502



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 69/186 (37%), Gaps = 8/186 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  +S I + + +   ++ W      I  + L I  +L 
Sbjct: 853  FGVEWNGLSYEERLSGNQAPALYALSIIVVFLVLAALYESWSVPFSVILVVPLGIIGSLI 912

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 G+  ++    A+LT +G +  + +++ +  ++    Y    +  D    ++   L
Sbjct: 913  AMNARGLPNDVFFQVALLTTVGLATKNAILIVEFAKEY---YENGANLVDATLHAVRVRL 969

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A  + V+P+A+    G     +    +  G++ A    IF      + +   
Sbjct: 970  RPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGGMMSATFMGIFFIPIFFVVVERM 1029

Query: 827  RAKNAR 832
             +K  +
Sbjct: 1030 FSKREK 1035


>gi|320011896|gb|ADW06746.1| protein-export membrane protein SecF [Streptomyces flavogriseus
           ATCC 33331]
          Length = 366

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/301 (27%), Positives = 145/301 (48%), Gaps = 13/301 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+  R    G+SIL +I +I  L   GLN GI+FKGG          V +S    +  
Sbjct: 18  YDFIGKRKIWYGVSILITITAILGLAVSGLNMGIEFKGGAVFTTDTKAKVSVSQAHEDAV 77

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +    +   Q         +R+Q    D+    ++   + + +          N ++VGP
Sbjct: 78  AASGHEAIVQELGNGG---LRIQITEVDTKKADQIKAQLSEDL---GIPEAKINADLVGP 131

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++  K   G+ I  + +++Y+ I F+W  A+ A+  LI DIT T+G +AL G E  
Sbjct: 132 SWGEQIANKAWAGLGIFMVLVVVYLAIAFEWRMAVAALIALIHDITITVGVYALVGFEVT 191

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++GYS+ D VVV+D +++  +  T     ++ ++ ++SIN TL RS+ T++
Sbjct: 192 PGTVIGLLTILGYSLYDTVVVFDSLKEGTQGITKQTRWTYSEIANRSINGTLVRSINTTV 251

Query: 778 AAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A + V  +   GG V     +   ++ +  G+   A SSIFIA P++  + +   +   
Sbjct: 252 VALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLKEREPQIKA 311

Query: 833 I 833
           +
Sbjct: 312 L 312


>gi|303256594|ref|ZP_07342608.1| multidrug/solvent RND transporter TtgB [Burkholderiales bacterium
           1_1_47]
 gi|330999232|ref|ZP_08322949.1| inner membrane multidrug efflux protein BpeB [Parasutterella
           excrementihominis YIT 11859]
 gi|302860085|gb|EFL83162.1| multidrug/solvent RND transporter TtgB [Burkholderiales bacterium
           1_1_47]
 gi|329575090|gb|EGG56641.1| inner membrane multidrug efflux protein BpeB [Parasutterella
           excrementihominis YIT 11859]
          Length = 1045

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/686 (11%), Positives = 188/686 (27%), Gaps = 41/686 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        +  +P   P          +           
Sbjct: 8   RPIFAWVIAIVIMLAGTLSIL-----NLPVSMYPQIAPP---------QVSISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + L        +        ITL+FA     +    +V   L  
Sbjct: 54  AKTIEDTVVQVIEQKMTGLDGYLYMSSTSESSGRINITLTFAAGTDPDMAQVQVQNRLSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L    ++  +         + +           + E    ++    + +   +   
Sbjct: 114 AQSSLPEVVQRLGVTVIKTTASFLKVIGLTSTDGSISSAELGDYLVSSIQEPLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L +   T A +       N        G            
Sbjct: 174 EVEVFGS-AFAMRIWLDPEKLHEFSLTPADIKTAISTQNVQISSGQVGGLPAAKGTALNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           ++     +                 +        +    + F      I K   +     
Sbjct: 233 VITSSSLL-------------ETPEQFGAIFLKTQENGSQVFLRDVARIEKGPKMYEATA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   T +        L          ++          S   
Sbjct: 280 FFNGKPTAGLAIKLASGANALLTSDLVDKKMEELSHFFPEKYEYVIPFDTTPFVRISIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   ++ + V+ T  +L  +G ++ + ++  +V
Sbjct: 340 VIHTLLEAIVLVVLVMYLFLQNFRATLIPTIAVPVVVLGTFGILGAMGYSINMLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +++  S   + +   S+    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMDQERLSPHDATEKSMSQITGALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F++T+  ++ +S+  A+++  A+   I++  K    +      F    + 
Sbjct: 460 GGSTGVIYRQFSVTIVAAMGLSVLVALTLTPALCATILKPIKHDKAEKGFFGWFNRWFNK 519

Query: 538 IA--------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            A            R + + V   ++        L         + +G + + +      
Sbjct: 520 GAEGATSAVGYMTARWKRFIVIYGVIIGGVVFGFLKVPTAFMPDEDQGSLMVQIQLPEGS 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               +   ++ +Q   ++ +    +    V      G           +K       P  
Sbjct: 580 TREQILPVVKRMQDYMLNEEKDSVQSVMTVVGFSLAGMGQNSAMAFVKLKDWSERPNPEQ 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVII 675
             Q       +         + G  +
Sbjct: 640 KAQAVAARANRTLMSWKDSMVFGFAL 665



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 92/237 (38%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V    +  ++ + +          L        +++  + +++   ++++   
Sbjct: 258 SQVFLRDVARIEKGPKMYEATAFFNGKPTAGLAIKLASGANALLTSDLVDKKMEELSHFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I   I  ++ + + +++ +++  + +   L     + + + 
Sbjct: 318 PEKYEYVIPFDTTPFVRISIEGVIHTLLEAIVLVVLVMYLFLQNFRATLIPTIAVPVVVL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G     G   N+  + A++  IG  V+D +VV + +     +    +S  D  +KS+
Sbjct: 378 GTFGILGAMGYSINMLTMFAMVLAIGLLVDDAIVVVENV--ERVMDQERLSPHDATEKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  +M      +PMA +GGS       F++ +   + ++   ++ +   +
Sbjct: 436 SQITGALVGIAMVLSAVFVPMAFFGGSTGVIYRQFSVTIVAAMGLSVLVALTLTPAL 492



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 79/230 (34%), Gaps = 12/230 (5%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + F+G     ++     G +  Q  +      K                  +   +    
Sbjct: 813  ERFNGLGAVNIQGAPAAGFTTGQAMLAMEEIAKALPYGFGIAWNGISFQEQQAGSQTGAL 872

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + ++I  + +     +   W   +  I  + L +   LG    FG+  ++     +LT
Sbjct: 873  YTLSILIVFLCLA---ALYESWSIPIAVILVVPLGVIGALGMTGAFGMNNDVYFQVGLLT 929

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA- 787
             IG    + +++ +  ++   L+    S       ++   +   + TS+A  + VLP+A 
Sbjct: 930  TIGLVSKNAILIVEFAKE---LHEKGESIVHAAAHAVRMRIRPIMMTSLAFGLGVLPLAK 986

Query: 788  --VWGGSVIGSFAIPMAFGIVVAASSSIFIAA---PILLFIYDWRAKNAR 832
                G     +  I +  G++      IF       +++ ++  + K  +
Sbjct: 987  ATGAGSGAQNAIGIGVLGGMLTGTFLCIFFVPLFYVLIVKLFGDKIKKKK 1036


>gi|323706429|ref|ZP_08117991.1| protein-export membrane protein SecF [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534214|gb|EGB24003.1| protein-export membrane protein SecF [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 312

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 151/303 (49%), Gaps = 5/303 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I  +        IS +  +  +  LFT GLN+G+DF GG  +    ++PV 
Sbjct: 1   MRWNNIKWNIDVIGKTKVWFTISGIIILAGLIALFTMGLNWGLDFTGGTVVEFNMHKPVT 60

Query: 591 LS--VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           ++     +N+        S     G  N  V +     D   +T V+  ++ K    V  
Sbjct: 61  IAMNNEITNILKSNGVKDSQVKAIGPNNTHVSITTPSLDDKTRTAVINAIESKYKLTVKD 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + +++ V   I +E+    I+   ++A+ +LIYI  RF +     A+  LI DI   +
Sbjct: 121 --LVSSQNVSASIGKEMQFGTILASAVAALLILIYIGFRFNFEMGAAAVLALIHDILIMI 178

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             +AL  I  +   VAA+LT+ GYS+ND +V++DR+R N+KL     S++++ + S+NET
Sbjct: 179 SAYALLRIVVDTPFVAAILTVFGYSINDTIVIFDRIRDNIKLMRK-ASYKEIANVSVNET 237

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + RS+ T M   + ++ M  +G + I SFA+P+  GI   A SSIFIA+P+ +   D   
Sbjct: 238 MTRSINTVMTVLLMLILMYFFGPASIKSFALPLLVGITSGAYSSIFIASPLWVIFKDKEG 297

Query: 829 KNA 831
           KN 
Sbjct: 298 KNR 300


>gi|152991991|ref|YP_001357712.1| preprotein translocase subunit SecF [Sulfurovum sp. NBC37-1]
 gi|151423852|dbj|BAF71355.1| preprotein translocase subunit F [Sulfurovum sp. NBC37-1]
          Length = 323

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 153/282 (54%), Gaps = 3/282 (1%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           M        +S++  I S+ L+ T G NYGIDF GG  + V       +  VR  +   +
Sbjct: 13  MSQSKRFGILSVVVVILSLGLILTKGFNYGIDFAGGTLVQVKYEGKAPIEKVRKAISVDK 72

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             + +   + G  + +V        S A    L     ++ +      ++  ++VG K+ 
Sbjct: 73  NYESATVTYFGSDDEVVIRTKM--SSKALGEDLSDKMTQLLKGTGKFEVRRVDMVGAKVG 130

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            EL  KG++ + ++ + +LIY+  RF+W FA+ ++  LI D+T  +G   LFGIE NL  
Sbjct: 131 SELREKGLMSMFLAILGILIYVSFRFEWRFAVASVMALIHDVTIAMGAVVLFGIEVNLDT 190

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +AA+LT++GYS+ND ++V+DR+R+ ++          +ID+S+ +TL R+  TS+  F  
Sbjct: 191 LAALLTILGYSLNDTIIVFDRIREGIRTI-KKPDLASIIDESVTQTLSRTTLTSLTTFFV 249

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           V  + ++GG +I  F   +  GIVV   SSIF+A+PIL+++ 
Sbjct: 250 VFTLWMFGGEIIHGFGFTLLVGIVVGTYSSIFVASPILMWLG 291


>gi|148652695|ref|YP_001279788.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Psychrobacter
           sp. PRwf-1]
 gi|148571779|gb|ABQ93838.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Psychrobacter sp. PRwf-1]
          Length = 1076

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 191/692 (27%), Gaps = 51/692 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G++  +        ++++P   P               + +    
Sbjct: 8   RPIFAWVIAILVMLLGVISVI-----NLPIEQYPRIAPPT-------------IKVSATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S       +TL+F +    +    +V  
Sbjct: 50  PGANAQTVEDSVVQIIEQRMKGLDGLMYMSSSSSSTGSGSVTLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  +         +++     +       + +  +    +DQ+   
Sbjct: 110 KLQAAMSSLPETVQRQGVNVNKSSSSFLMVQAFVSEDGSMDRSDIADYVASNVVDQLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP+RLR      + +       N        G        
Sbjct: 170 EGVGDINLFGS-SYAMRVWLDPARLRSYNLVPSDVVNAIRAQNAQVSAGQLGQAPADTDK 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                         I+   +  ++     +    +   +    +        +       
Sbjct: 229 QV------------INATVSVQSYLKTAEEFSNILVKTDGTGAQVRLGDVARVEMGSENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +           S     +   T E        L A        +V          
Sbjct: 277 SVNALYNGKEAAGLGISLAPGSNALATRELVAERMTQLEANFPKGLTAVVPYDTTPFVKL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++   ++ + ++ T  +L + G ++ + ++
Sbjct: 337 SIEQVVHTLLEAIALVFVVMFLFLQNWRATIIPTLAVPVVLLGTFGVLYVAGFSINVLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IGL VD  I+V E +    E     S+  +           +    +      V
Sbjct: 397 FAMVLSIGLLVDDAIVVVENVERILEENPEISIKDATFQSMREISKVVIGIALILSAVFV 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSI 523
            + FFGG      R F+IT+  S+++S   A+    A+ + +          +       
Sbjct: 457 PMAFFGGSTGVIYRQFSITLITSMVLSALVALIFTPALCVTLLKRQKNHGEEKKGFFGWF 516

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +           I         + +G + +  + ++  L   G     + +G +   V
Sbjct: 517 NRSFDKTSKAYERFIGKSINLKWLYLIGYAAIIGLMAVVFLRIPGSFLPEEDQGIMITLV 576

Query: 584 LANRPVDLSVVRSNLESL-QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                  L   +  L+ +    D   ++       +    +           + +     
Sbjct: 577 QLPSGSTLDETQEVLDKVRGYYDSQEKDNVASVFTVAGFSFAGQGQNMGLAFVRLSDWAN 636

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            +    S              +L    +  ++
Sbjct: 637 RKGEQNSAQAVAGRAMGYFFTQLNEAQVYAIV 668



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 92/248 (37%), Gaps = 5/248 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +   ++      E   L        +++A   ++     ++    P
Sbjct: 260 QVRLGDVARVEMGSENYSVNALYNGKEAAGLGISLAPGSNALATRELVAERMTQLEANFP 319

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          +  I + +  ++ +   + + +++  + W   +     + + +  
Sbjct: 320 KGLTAVVPYDTTPFVKLSIEQVVHTLLEAIALVFVVMFLFLQNWRATIIPTLAVPVVLLG 379

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G   + G   N+  + A++  IG  V+D +VV + + + +      IS +D   +S+ 
Sbjct: 380 TFGVLYVAGFSINVLTMFAMVLSIGLLVDDAIVVVENV-ERILEENPEISIKDATFQSMR 438

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     +  ++      +PMA +GGS       F+I +   +V++A  ++     + + +
Sbjct: 439 EISKVVIGIALILSAVFVPMAFFGGSTGVIYRQFSITLITSMVLSALVALIFTPALCVTL 498

Query: 824 YDWRAKNA 831
              +  + 
Sbjct: 499 LKRQKNHG 506



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 76/248 (30%), Gaps = 10/248 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              N+    +     +         +QN                   A   +         
Sbjct: 785  DINKWYVRNKTGDMISMGGFSSSEWQNASPSLTRYNSFPSMNIQGSAAPGLSTGEAMAAM 844

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVG-VIISAIAMLIYI---WIRFKWYFALGAITT 699
            E +              +S E  + G    ++ +   +++++    +   W      +  
Sbjct: 845  EEMVSQLPPGVGYEWTGMSLEEKKSGAQAPMLYALSILVVFLCLAALYESWSIPFAVLLV 904

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + L +   +          ++     +LT++G S  + +++ +  ++         S R+
Sbjct: 905  IPLGVLGAVVLTWFRQFANDIYLQVGLLTVVGLSAKNAILIIEFAKE---HQEEGYSLRE 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +  +  + L   + TS+A    V+P+ +    G     +    +  G++ A    IF  
Sbjct: 962  AVMTAARQRLRPIIMTSLAFGFGVVPLYLATGPGAGSQNAIGTSVVGGVITATLLGIFFI 1021

Query: 817  APILLFIY 824
                +++ 
Sbjct: 1022 PMFYVWVR 1029


>gi|107023545|ref|YP_621872.1| hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|116690628|ref|YP_836251.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia HI2424]
 gi|170733972|ref|YP_001765919.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia MC0-3]
 gi|105893734|gb|ABF76899.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|116648717|gb|ABK09358.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia HI2424]
 gi|169817214|gb|ACA91797.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia MC0-3]
          Length = 1066

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPISQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPVLPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANFVASHVKDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+RL     T   +S      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPNRLTNYGLTPVDVSSAITAQNVQIAGGQIGGTPATPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNNSRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++    
Sbjct: 258 SQVRLKDVAQIGLGGENYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 80/219 (36%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K   +    +         +   +    
Sbjct: 816  ERYNGVSAMEIQGQAAPGKSTGQAMAAMETLAKKLPVGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    + G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATMRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/521 (11%), Positives = 132/521 (25%), Gaps = 36/521 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   + + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLKDEKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSQRQHANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +        ++         +  +     ++  +A      ++  R   +G++    
Sbjct: 650  MFGRYGSYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMASKDP 709

Query: 182  QRLGSH----RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               G          Q     D  +   L  T   +     +                   
Sbjct: 710  TLQGVRPNGLNDTPQYKVNIDREKANALGVTADAIDQTFSIAW----------------- 752

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 V + ++  G           P    P     +                       
Sbjct: 753  -ASKYVNNFLDTDGRIKKVYVQADAPFRMTPEDMNIWYVRNGSGGMVPFSAFSTGHWTYG 811

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     V    I    A          A    A      +      +  + + +   
Sbjct: 812  SPKLERYNGVSAMEIQGQAAPGKSTGQAMAAMETLAKKLPVGIGYSWTGLSFQEIQSGS- 870

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                     AI   +V + L  +             + L VI  L   ++ G    +   
Sbjct: 871  ---QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATMRGLENDVFFQ 927

Query: 418  AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  + 
Sbjct: 928  VGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVMP 987

Query: 477  LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            L      G  +       +   ++ + F AI ++    + I
Sbjct: 988  LAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028


>gi|226953158|ref|ZP_03823622.1| cation/multidrug efflux pump [Acinetobacter sp. ATCC 27244]
 gi|226836088|gb|EEH68471.1| cation/multidrug efflux pump [Acinetobacter sp. ATCC 27244]
          Length = 1041

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/685 (11%), Positives = 178/685 (25%), Gaps = 44/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 8   RRPIFAWVIAIFIILFGLLSI-----PKLPIARFPSVAPP-------------QVNISAV 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +I+ +F      +     V 
Sbjct: 50  YPGATPKTINDSVVTLIERELSGVKNLLYYSSTTDTSGTAEISATFKPGTDVDMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ + ++L    ++  L   +     ++L            I+ S  ++R  ++++  
Sbjct: 110 NKIKAIEARLPQIVRQQGLQVESSSSGFLMLVGIKSPNGQYSEIDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 170 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNAAIRENNVEIAPGRLGDMPAEQG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++  I              +        +            N+      
Sbjct: 229 QLITIPLSAQGQLDSIE-------------QFKNISLKSKTSGSVIRLSDVANVEIGSQA 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T +        L           +         
Sbjct: 276 YNFAILEDGKPSTAAAIQLSPGANAVKTADAVREKIEELNINLPEGMQFSIPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T A++ + G ++ + +
Sbjct: 336 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFAVMLVAGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +      +         S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLPPKEATSKAMKEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      + F +TM +SIL S   A+ +  A+   I++            + F 
Sbjct: 456 PMAFASGSVGIIYQQFTLTMSVSILFSALLALVLTPALCATILKPIDGHHQKKGFFAWFD 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL---ANRPV 589
              D +  ++ R     +  SI   +  + +               +             
Sbjct: 516 RSFDKVTKKYERILLKVIKHSIPMMVIFVVITGLTFAGMKYWPTAFMPEEDQGWFLTSFQ 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S   +      +        D             G S +   V              S
Sbjct: 576 LPSDATTERTKNIVNQFEDSLKDNPNVKNNTTILGWGFSGSGQNVAVSFTTLKDFKDRTS 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
           +                    + V+
Sbjct: 636 SASEMTNAVNAEMANSKEGATMAVL 660



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-W 685
            + A    +E +   + E +  S   +T         ++I   +  +++  I M +++  
Sbjct: 303 TADAVREKIEELNINLPEGMQFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHN 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +R+    A+ A   L      T     + G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 363 VRYTLIPAIVAPIAL----LGTFAVMLVAGFSINVLTMFGMVLAIGIIVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMA 802
               + T  +  ++   K++ E     +  ++      LPM    G   I    F + M+
Sbjct: 418 -ERIMATEGLPPKEATSKAMKEITSPIIGITLVLAAVFLPMAFASGSVGIIYQQFTLTMS 476

Query: 803 FGIVVAASSSIFIAAPI 819
             I+ +A  ++ +   +
Sbjct: 477 VSILFSALLALVLTPAL 493



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 73/214 (34%), Gaps = 10/214 (4%)

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            + + Q ++              +    +       + +   +P         +  +  + 
Sbjct: 802  NKAPQQYNRYNGRPSLSIAGIPNFDTSSGDAMREMENLIAQLPKGIGYEWTGISLQEKQS 861

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTA 722
              +   + V+   +  L+   +   W   L     L++ +       A+   G+  ++  
Sbjct: 862  ESQMAFLLVLSMLVVFLVLAALYESWAIPLS--VMLVVPLGIFGAIVAIMTRGMMNDVFF 919

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++T+IG S  + +++ +  +    L    +S  +   ++    L   + TS+A    
Sbjct: 920  KIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEATVQAAKLRLRPILMTSLAFTCG 976

Query: 783  VLPMAVWGG---SVIGSFAIPMAFGIVVAASSSI 813
            V+P+ +  G       +    +  G++ A   +I
Sbjct: 977  VIPLVIASGASSETQHALGTGVFGGMISATILAI 1010


>gi|56459811|ref|YP_155092.1| acriflavin resistance protein B [Idiomarina loihiensis L2TR]
 gi|56178821|gb|AAV81543.1| Probable acriflavine resistance protein B, RND family efflux system
           component [Idiomarina loihiensis L2TR]
          Length = 1033

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 79/681 (11%), Positives = 184/681 (27%), Gaps = 39/681 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    G +  L     Q  + ++P+  P               +      
Sbjct: 8   RPIFAWVIALLTMMAGAIAML-----QLPIAQYPTIAPPAV---------EIQVSYPGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V+  +    ++  + +                ++L+FA     +    +V   L   
Sbjct: 54  AETVSNTVTKVIEQNMTGIDNLLYFSSQSNFGNGTVSLTFASGTDPDIAQVQVQNKLSQA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    +   +  +      ++++            + S  I     D I  +     
Sbjct: 114 TPQLPQAVQAQGITVSKASSSFLMVAALVASDDRYSQTDLSDYIASNIQDPIARTTGVGN 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                          DPS L     T A +       N        G     +       
Sbjct: 174 VQLFGSPYSM-RIWVDPSALVNYGMTMADLKSAIQAQNAQVAAGELGGTPAVEGQRLNAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  +  +S                +             +        + K          
Sbjct: 233 IIAQTRMS-------------DVSEFENITLKVLSDGSQVRLKDVAEVEKGAENYSIQAN 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      + +   +   T +      A L          +           S S  
Sbjct: 280 YNGKPATGLAINLQTGANALETADAVKARMAELEEFFPDGMELVTAYDTTPFIKISISEV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    LV +++F+ +   +  L+   +I + ++ T+ +++L G ++   ++ G+VL
Sbjct: 340 AQVLIEAIILVFLLMFVFLQNLRATLIPTLAIPVVILGTMGVMALAGFSINTLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IGL VD  I+V E +    + +  S   +      +    +    +        + FF 
Sbjct: 400 SIGLLVDDAIVVVENVERLMSEEGLSPKQATIKSMGQITGALVAIGVVMAAVFAPMAFFP 459

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F++T+  S+ +S+  AI    A+   +++  K           +F      
Sbjct: 460 GSTGAVYRQFSLTIITSMGLSVLVAIVFSPALCATLLKPVKHDKSSGWGPLGWFNRTLEK 519

Query: 539 A-------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                   I  +  R    G+  L  I  +  LF       +  +           PV  
Sbjct: 520 WTDKYTNTIHSILRRTVRFGVLYLGIIGILVFLFMKLPAAFLPDEDRGVFLTQMQLPVGS 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           ++ +S     +I +      D  ++    + +          +  +  K  +E     ++
Sbjct: 580 TIEQSVNTMDKIENYYLNQEDAVQSVFSVVGFSFSGRSQANGIAFVRLKDWSERDESQSV 639

Query: 652 QNTEIVGPKISRELIRKGIVG 672
                        +    I  
Sbjct: 640 NAVIGRAFGFFAGIKEAMIFA 660



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 86/255 (33%), Gaps = 6/255 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F+      +     V L  V    +  +   I           L        +++     
Sbjct: 245 FENITLKVLSDGSQVRLKDVAEVEKGAENYSIQANYNGKPATGLAINLQTGANALETADA 304

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           ++    ++ E  P      T        +  I +    +I + I + + +++  +     
Sbjct: 305 VKARMAELEEFFPDGMELVTAYDTTPFIKISISEVAQVLIEAIILVFLLMFVFLQNLRAT 364

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + I  T+G  AL G   N   +  ++  IG  V+D +VV + +     +   
Sbjct: 365 LIPTLAIPVVILGTMGVMALAGFSINTLTMFGMVLSIGLLVDDAIVVVENV--ERLMSEE 422

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +S +    KS+ +  G  V   +       PMA + GS       F++ +   + ++  
Sbjct: 423 GLSPKQATIKSMGQITGALVAIGVVMAAVFAPMAFFPGSTGAVYRQFSLTIITSMGLSVL 482

Query: 811 SSIFIAAPILLFIYD 825
            +I  +  +   +  
Sbjct: 483 VAIVFSPALCATLLK 497



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 74/219 (33%), Gaps = 11/219 (5%)

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
            ++G     ++ Q  PG S  +  +                     +   +          
Sbjct: 813  YNGVAAMEIQGQAAPGVSTGEAMIEMEKMIAKLPPGIGFEWTGISLQERQSGDF----AP 868

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +   +S I + +++   ++ W      +  + L I   +    L GI  ++     +LT 
Sbjct: 869  ILYSVSLIVVFLFLAALYESWSIPFSVMLVVPLGILGAVVAVMLRGISNDVYFQVGLLTT 928

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G S  + +++ +  +    L        D   +++   L   + TS+A    V+P+A+ 
Sbjct: 929  VGVSARNAILIVEFAKD---LQAQGKELLDATLEAVRLRLRPILMTSLAFIFGVMPLALS 985

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               G +   +    +  G++     +IF        +  
Sbjct: 986  DGAGAASRNAIGTSVIGGMIGGTVLAIFFVPLFFYVVRR 1024


>gi|76810076|ref|YP_332431.1| inner membrane protein [Burkholderia pseudomallei 1710b]
 gi|126439685|ref|YP_001057906.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 668]
 gi|126453664|ref|YP_001065141.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 1106a]
 gi|134279831|ref|ZP_01766543.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 305]
 gi|167822960|ref|ZP_02454431.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 9]
 gi|167844527|ref|ZP_02470035.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei B7210]
 gi|167893058|ref|ZP_02480460.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 7894]
 gi|167917783|ref|ZP_02504874.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei BCC215]
 gi|217419539|ref|ZP_03451045.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 576]
 gi|226199411|ref|ZP_03794969.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811056|ref|YP_002895507.1| AcrB protein [Burkholderia pseudomallei MSHR346]
 gi|242316561|ref|ZP_04815577.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 1106b]
 gi|254181593|ref|ZP_04888190.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 1655]
 gi|254196862|ref|ZP_04903286.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei S13]
 gi|254259430|ref|ZP_04950484.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 1710a]
 gi|76579529|gb|ABA49004.1| inner membrane protein [Burkholderia pseudomallei 1710b]
 gi|126219178|gb|ABN82684.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 668]
 gi|126227306|gb|ABN90846.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 1106a]
 gi|134249031|gb|EBA49113.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 305]
 gi|169653605|gb|EDS86298.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei S13]
 gi|184212131|gb|EDU09174.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 1655]
 gi|217396843|gb|EEC36859.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 576]
 gi|225928487|gb|EEH24516.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503376|gb|ACQ95694.1| AcrB protein [Burkholderia pseudomallei MSHR346]
 gi|242139800|gb|EES26202.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 1106b]
 gi|254218119|gb|EET07503.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 1710a]
          Length = 1066

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 157/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       IT++FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITEATLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        + A      +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNSSRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     +++   
Sbjct: 258 SQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 135/519 (26%), Gaps = 38/519 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLTQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSDQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  L++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLRGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVM 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             L      G  +       +   ++ + F AI ++    
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|90411109|ref|ZP_01219122.1| Putative membrane protein SecD [Photobacterium profundum 3TCK]
 gi|90327955|gb|EAS44276.1| Putative membrane protein SecD [Photobacterium profundum 3TCK]
          Length = 605

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 160/527 (30%), Positives = 273/527 (51%), Gaps = 34/527 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +  ++   + L  ++    P  +       I LGLDLRGG   +L+VD D        
Sbjct: 95  TVLANVVKDKSTLTLALEPAAPLWLQNMGFEPIKLGLDLRGGVQFLLDVDIDQVYKAQGA 154

Query: 72  MYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
             +DELR  L+KEGI    + +   + +T+   +S     +   V        +      
Sbjct: 155 SLADELRQLLRKEGIRGARVEQSDADHLTVKVNNSDANSAVRKFVKKQYPQWQA------ 208

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
                       + + + +    ++ +  ++Q+++ +R RI+++GI+E+ +QR G +RI 
Sbjct: 209 -----TNGDGNSVRLAMKEAEKTELRNLTVQQNLQTMRSRIEELGITEALVQRQGENRIR 263

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           I+LPG QDP+  + ++G TA ++F+ V               L++  G    V     + 
Sbjct: 264 IELPGVQDPAAAKNVIGATASLAFYAVKEQ-----GTGSTMELKNKQGQPVRVGRNPILG 318

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR--------- 301
           G H+  A A+F        V+I+ D  G +   + +RDN+GKP+A               
Sbjct: 319 GDHIVDARASFGEMGM-AEVNITLDSSGGKIMSDFSRDNVGKPMATSYSEYGRDSEGKTT 377

Query: 302 ---VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               + +    Q+    + +I+G  +++ A  LA +LRAGSL   + IVEER +G  LG+
Sbjct: 378 QTNEIISVATIQSQLGMRFRITGTGSMDEAQQLALLLRAGSLTAPVTIVEERTIGPTLGA 437

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSI 417
           ++I  G  A+  GL + +LFM V Y + G VA+ ++  N+I+   LL+L+  A LTLP I
Sbjct: 438 ENIENGFAALGLGLGVTLLFMAVWYRRLGWVANVALIANMIMLFGLLALIPGAVLTLPGI 497

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG+VL +G+AVD+N+L+ ERI+++ ++ +S+  ++D GFS A  TIFD+N T +I  VVL
Sbjct: 498 AGLVLTVGMAVDTNVLIFERIKDKLKEGRSMAQAIDRGFSSAIGTIFDANFTTMITAVVL 557

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +  G G ++GFA+T+GL +L SMFT I   RA++  +      ++I 
Sbjct: 558 YAIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRDSRRNIR 604



 Score =  115 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 93/261 (35%), Gaps = 5/261 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  V        S    + E          +    ++ L       G     
Sbjct: 346 GKIMSDFSRDNVGKPMATSYSEYGRDSEGKTTQTNEIISVATIQSQLGMRFRITGTGSMD 405

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I  G   + +     L+++ + ++  
Sbjct: 406 EAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIENGFAALGLGLGVTLLFMAVWYR-R 464

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 465 LGWVANVALIANMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 524

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                S    ID+  +  +G     +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 525 ---GRSMAQAIDRGFSSAIGTIFDANFTTMITAVVLYAIGNGPIQGFALTLGLGLLTSMF 581

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
           + IF +  I+  ++   ++  
Sbjct: 582 TGIFASRAIINLVWGRDSRRN 602


>gi|269968351|ref|ZP_06182370.1| putative acriflavin resistence protein [Vibrio alginolyticus 40B]
 gi|269827037|gb|EEZ81352.1| putative acriflavin resistence protein [Vibrio alginolyticus 40B]
          Length = 1033

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/692 (11%), Positives = 182/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPQISPP-------------SVSVSAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           ++   +          +    DP ++  L  TT+ +       N        G     + 
Sbjct: 170 AKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYAALAEQNVQVAAGRVGAAPYNNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANPNGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGNGKFRGQDASIVALSLQSDANALESGQAVMELLEGLSKNFPEGMEYETSYDTTVFVS 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSISPRKATLLAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           I   +L    G   R FA+T+ +S++IS   A+++  A+   +            ++ + 
Sbjct: 457 IPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTANWFQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  +     T       + KG + + V  
Sbjct: 517 GLERITTRYGQIAGFLVKKSLLLVTFFIVAIAAVTFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     V   +    T  
Sbjct: 577 PDSASLSRTEEVTNDLMKMIGEEPGVDGVTVANGYSFMTGAAASNGASVFIKLHDWDTRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                     I      R         V+ + 
Sbjct: 637 SLQGEHSANAIAARINGRAATE-LPQAVVFAM 667



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 86/235 (36%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D + +    + + +        +++   + +  + + +++  P 
Sbjct: 262 VYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESGQAVMELLEGLSKNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GMEYETSYDTTVFVSESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         SIS R     ++ E
Sbjct: 382 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPSISPRKATLLAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      +P+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/350 (11%), Positives = 87/350 (24%), Gaps = 21/350 (6%)

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFI 514
            A +   +      +   V+F  G  AV G     G   ++      S   +   M   I
Sbjct: 645 NAIAARINGRAATELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLSMVMGEMI 704

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
               +   I     +    +P                            L +  +N    
Sbjct: 705 QAANQAPEIAYTFSTFRANVPHYYVDIDREKAQQLGISLSSIFQTLQGNLGSLYVNDFTM 764

Query: 575 FKGGIQLGVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           F    ++ + A+              V  S       S  +        D    + +   
Sbjct: 765 FGKNFRVTMQADSQHRSSMEDLERFHVRSSNGDMVPLSTLVSYEQVFEPDVAWRYNMYRS 824

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAML 681
                  A           +  +      Q        ++ + +  G   +   +   + 
Sbjct: 825 AIIQGQPAPGYSSGDAIAAMERVAAEVLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIF 884

Query: 682 IY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           IY   +     W   L  I  + +    +     L G   NL A   ++ LI  +  + +
Sbjct: 885 IYLFMVAQYESWSIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAI 944

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           ++ +  ++  +             K           TS +  + + P+  
Sbjct: 945 LIVEFAKQEREE--KDADIDSAAVKGGTLRFRAVNMTSWSFILGIFPLIF 992


>gi|331005921|ref|ZP_08329269.1| protein-export membrane protein SecF [gamma proteobacterium
           IMCC1989]
 gi|330420277|gb|EGG94595.1| protein-export membrane protein SecF [gamma proteobacterium
           IMCC1989]
          Length = 418

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 69/259 (26%), Positives = 136/259 (52%), Gaps = 6/259 (2%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N      G + +            +   +  + +   S          ++  +     + 
Sbjct: 149 NDPARPNGALIISFSDASETLRQDIEGFVGEMGLKQYSISTLVDNNFTVLSAEGLQVFTE 208

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                  ++            I+ TE VGP++  EL  +G +G++ +   ++ Y+ +RF+
Sbjct: 209 TL-----LINTLSNASGSEVIIKRTEFVGPQVGDELRDQGGIGMLFALAIVMAYVALRFQ 263

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           + F++ ++  L  D+   LGFF++F ++F+LT +AAVL +IGYS+ND +VV DRMR+N +
Sbjct: 264 FKFSVASVAALAHDVIVVLGFFSIFSLDFDLTVLAAVLAVIGYSLNDTIVVSDRMRENFR 323

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
           L  T  +  ++I+ S+ +TLGR++ TS+  F+ +L +   GG +I +F+I +  G+++  
Sbjct: 324 LMRTGDAL-EVINVSLTQTLGRTLVTSLTTFLVLLALFFVGGELIHAFSIALMIGVIIGT 382

Query: 810 SSSIFIAAPILLFIYDWRA 828
            SS+++AA ILL ++  + 
Sbjct: 383 YSSVYVAANILLMMHISKE 401


>gi|313156905|gb|EFR56343.1| RND transporter, HAE1 family [Alistipes sp. HGB5]
          Length = 1013

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 81/611 (13%), Positives = 174/611 (28%), Gaps = 48/611 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L  +I   G +           +  FPS                  +     
Sbjct: 9   RRPVLSTVLTIIILLFGFI-----GYSYLGVREFPSVDNPI-----------ISVTCSYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    ++  + +           Q Q++IT+ F  S   E  A+ V   +
Sbjct: 53  GANADVIENQITEPLEQNINGIPGIRSMSSVSSQGQSRITVEFELSVDLETAANDVRDKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  D     +         I++    I       +E S        +Q+     
Sbjct: 113 SRAQRYLPRDCDPPTVTKADADATPILMV--TIQSDKRSLLELSEIADLTVKEQLQTISD 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP+++     T A +                        D  
Sbjct: 171 VSGVQIWGEKRYSMRLWLDPAKMAGYGITPADVKSAL--------------------DRE 210

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                     T +   D+   E   R                   
Sbjct: 211 NVELPSGSIEGNTTELTIRTLGLMHTSQEFNDLVVREDADRIIRLSDVGRAELGPQDTRS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +    +   +   +   +     +        ++       +      N      S 
Sbjct: 271 YMKMNGIPMVGIVVVPQPGANHIEIADEVYRRMESMKKDLPEDVVTDYGFDNTRFIRASI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K T      LV+I++F+ +   +  L+    I +++I T  L+ + G ++ + S+  
Sbjct: 331 DEVKQTVYEAFLLVIIIIFLFLRNWRVTLIPCIVIPVSLIGTFFLMYVAGFSINVLSMLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I++ E I     +  S   +   G    +  +  ++IT +     + F
Sbjct: 391 VVLSVGLVVDDAIVMTENIYIRIERGMSPKEAGIEGAKEIFFAVISTSITLIAVFFPIVF 450

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI-- 534
             G      R F++ +  +++IS F A++I   +   ++  ++ +S   N    FF+   
Sbjct: 451 MEGMTGRLFREFSLVISGAVVISTFAALTITPMLATKLLVRQEKQSWFYNKTEPFFVWLN 510

Query: 535 --PDCIAIQFMRARFWGVGISILFSI-CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                    F+R R+  + +  L                  ++ +  I +    +     
Sbjct: 511 NFYSRTLAGFLRRRWIALPLVALMIGLIGWLWGSIPAEMAPLEDRSQITINTRGSEGATY 570

Query: 592 SVVRSNLESLQ 602
             +R   E + 
Sbjct: 571 EYLRDYTEGIN 581



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 75/244 (30%), Gaps = 6/244 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R+ L           N       +V  Q           V   ++    ++     
Sbjct: 256 SDVGRAELGPQDTRSYMKMNGIPMVGIVVVPQPGANHIEIADEVYRRMESMKKDLPEDVV 315

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                     I   +            + ++I       W   L     + + +  T   
Sbjct: 316 TDYGFDNTRFIRASIDEVKQTVYEAFLLVIIIIFLFLRNWRVTLIPCIVIPVSLIGTFFL 375

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G   N+ ++ AV+  +G  V+D +V+ + +          +S ++   +   E   
Sbjct: 376 MYVAGFSINVLSMLAVVLSVGLVVDDAIVMTENI---YIRIERGMSPKEAGIEGAKEIFF 432

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + TS+       P+    G        F++ ++  +V++  +++ I   +   +   +
Sbjct: 433 AVISTSITLIAVFFPIVFMEGMTGRLFREFSLVISGAVVISTFAALTITPMLATKLLVRQ 492

Query: 828 AKNA 831
            K +
Sbjct: 493 EKQS 496



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 74/167 (44%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I   +++ + + + +  +F+ +   L  + T+ L I   L F A  G   N+ +   ++ 
Sbjct: 846  IFAFLLAIVLIYLILAAQFESFKDPLVIMLTVPLAIAGALVFMAANGQTMNIFSQIGIIM 905

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +     ++ R+ I+++  + L   + TS +  + +LP+ +
Sbjct: 906  LIGLVAKNGILIVEFAN---QKQDAGLNKREAIEQASLQRLRPILMTSASTILGLLPLTM 962

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G          + +  G+VV+   +++I   I  ++   R +  +
Sbjct: 963  ASGEGAQGRIAMGVAVVGGMVVSTLLTLYIVPAIYSYVSTDRIRKTK 1009


>gi|237718243|ref|ZP_04548724.1| multidrug efflux membrane fusion protein [Bacteroides sp. 2_2_4]
 gi|229452427|gb|EEO58218.1| multidrug efflux membrane fusion protein [Bacteroides sp. 2_2_4]
          Length = 1010

 Score =  193 bits (489), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 83/626 (13%), Positives = 172/626 (27%), Gaps = 44/626 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAQPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T     D+   E   R              A +    
Sbjct: 233 L--------------------MHTADEFNDLIIKEENNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K  +   +   G    +  +  + IT +     + F  
Sbjct: 393 LSVGLVVDDAIVMTENIYIRIEKGMAPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ +S        FF   + +
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQSWFYAKTEPFFEGMNRL 512

Query: 539 AIQ----FMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+  R+     + +                  ++ +  I +       V    
Sbjct: 513 YSRSLAAFLGKRWIAPPFTFITICLIGILWNAVPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLV 619
           +R   E +     S           V
Sbjct: 573 IRDYTEDINQLVDSILPDAESVTARV 598



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V + +++   ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASINEVKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ A++  +G  V+D +V+ + +          ++ ++   +   E     + 
Sbjct: 380 GFSINVLSMLAIVLSVGLVVDDAIVMTENI---YIRIEKGMAPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G        F+I ++  +++++ +++     +   +   R K +
Sbjct: 437 TTITLVAVFFPIVFMDGMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            VV+   +++I   I  +I   R K 
Sbjct: 983  VVSTLLTMYIVPAIYSYISTNRIKK 1007


>gi|332141157|ref|YP_004426895.1| RND family efflux transporter [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551179|gb|AEA97897.1| RND family efflux transporter [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 764

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/629 (12%), Positives = 184/629 (29%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   G++           L  +P   P                     
Sbjct: 9   KRPVFATVINLLLIIFGVVA-----FSMLSLREYPDIDPPIV---------SVSTTYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S ++       + R  ++ IT+ F  SR  +  A+ V   +  
Sbjct: 55  SANIVETRITQLLEDRISGIEGIKNVTSTSRNGRSDITIEFKLSRDIDAAANDVRERVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L        +      E ++V        +  + +E +    R  +D++ I +   
Sbjct: 115 ALNNLPDQADPPEVSKANSDESAVVWYNLRSTNL--NTMELTDYAERVLVDRLSIVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D + +     T + +                          N  
Sbjct: 173 RVQIGGGRRYAMKVFLDRNAMAARGITVSDVEQVIRAE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   +VE +  +     A                             ++           
Sbjct: 214 LPAGEVESTDRNFEVRVARTFLSPDDFSALTVAVGDNGYLVRLGEIAHVELTAEDDETEF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +++ +       A    A + A        +    +      S   
Sbjct: 274 RGDGVNMIGLGIIKQSKANTLDVARAAKAQIAKIEATLPDNIFIVPSYDSSVFIEASIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   +V+IV+++ +   +  L+   ++ +++I    ++  LG ++ L ++  +V
Sbjct: 334 VYETLGIAMLMVVIVIYLFLGNIRATLIPAVTVPVSIIAAFIVMYALGFSINLLTLLAMV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +   G       +  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVVLENIYRRIEMGEPPILAAYRGAKEVGFAVIATTLVLISVFVPLVFLE 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA+ +  ++  S FTA+++   M   I++ +   S   + + + F   +  
Sbjct: 454 GNIGRLFTEFALAIAAAVAFSSFTALTLSPMMASKILKKRTRSSGFGSWMDKRFSQLENG 513

Query: 539 AIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           + + I                   + +G   + + A        
Sbjct: 514 YFTALGKTLHQPILMLLLLVITVVALVQLSEKVPSEFVPKEDRGNFFILMNAQEGASFES 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
              NLE ++   + ++        LVR  
Sbjct: 574 NAKNLEKIESILMPYRESGKINRLLVRTP 602



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 69/210 (32%), Gaps = 4/210 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +     + +  +  F+        L  ++    +++   R  +    KI   +P 
Sbjct: 254 VRLGEIAHVELTAEDDETEFRGDGVNMIGLGIIKQSKANTLDVARAAKAQIAKIEATLPD 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +                I +    + I+ + ++I I++        L    T+ + I   
Sbjct: 314 NIFIVPSYDSSVFIEASIDEVYETLGIAMLMVVIVIYLFLGNIRATLIPAVTVPVSIIAA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   NL  + A++  IG  V+D +VV + +    +             +   E
Sbjct: 374 FIVMYALGFSINLLTLLAMVLAIGLVVDDAIVVLENI---YRRIEMGEPPILAAYRGAKE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                + T++      +P+    G++   F
Sbjct: 431 VGFAVIATTLVLISVFVPLVFLEGNIGRLF 460


>gi|260174240|ref|ZP_05760652.1| multidrug efflux membrane fusion protein [Bacteroides sp. D2]
 gi|315922509|ref|ZP_07918749.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696384|gb|EFS33219.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1010

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 83/626 (13%), Positives = 173/626 (27%), Gaps = 44/626 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAQPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T     D+   E   R              A +    
Sbjct: 233 L--------------------MHTADEFNDLIIKEENNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K  +   +   G    +  +  + IT +     + F  
Sbjct: 393 LSVGLVVDDAIVMTENIYIRIEKGMAPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ +S        FF   + +
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQSWFYAKTEPFFEGMNRL 512

Query: 539 AIQ----FMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+  R+  +  + +                  ++ +  I +       V    
Sbjct: 513 YSRSLAAFLGKRWIALPFTFITICLIGILWNAVPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLV 619
           +R   E +     S           V
Sbjct: 573 IRDYTEDINQLVDSILPDAESVTARV 598



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V + +++   ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASINEVKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ A++  +G  V+D +V+ + +          ++ ++   +   E     + 
Sbjct: 380 GFSINVLSMLAIVLSVGLVVDDAIVMTENI---YIRIEKGMAPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G        F+I ++  +++++ +++     +   +   R K +
Sbjct: 437 TTITLVAVFFPIVFMDGMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            VV+   +++I   I  +I   R K 
Sbjct: 983  VVSTLLTMYIVPAIYSYISTNRIKK 1007


>gi|254458159|ref|ZP_05071585.1| protein-export membrane protein SecF [Campylobacterales bacterium
           GD 1]
 gi|207084995|gb|EDZ62281.1| protein-export membrane protein SecF [Campylobacterales bacterium
           GD 1]
          Length = 323

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 160/294 (54%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                      FM      + +S++  + S  LL T GLNYG+DF GG  + V  +    
Sbjct: 1   MEFFKYTKTFNFMGKSKLAMILSVVLVLASYALLATKGLNYGVDFAGGTIVQVKYDTTAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R  L+  ++ + +     G  + +V        +   T  +  V ++  +      
Sbjct: 61  IDAMREKLKGNELFNNASITEFGAVDEVVIR--MKSTTGDVTVDVGDVTREALKGTGNYE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  +IVGP +  EL  KGI+ ++++ I +LIY+  RF+W FA+ +I  LI DI+  LG 
Sbjct: 119 IRRVDIVGPTVGAELKEKGIMSLLLAMIGILIYVAFRFEWRFAVASIVALIHDISIALGA 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             L G++ NL  +AA+LT++GYS+ND ++V+DR+R+ +   + +    ++I++SI  TL 
Sbjct: 179 ITLVGLDVNLDVLAALLTILGYSLNDTIIVFDRIREGV-TSSKNTDLTEIINESITRTLA 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R+  TS+  F  V  + ++GG +I +FA  +  G+VV   SSIF+A+PILL+  
Sbjct: 238 RTTLTSLTTFFVVFTLFMFGGEIIHAFAFTLLVGVVVGTYSSIFVASPILLWFG 291


>gi|206561158|ref|YP_002231923.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
 gi|198037200|emb|CAR53121.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
          Length = 1066

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 70/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPISQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPVLPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANFVASHVKDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+RL     T   +S      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPNRLTNYGLTPVDVSSAITAQNVQIAGGQIGGTPATPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNNSRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++    
Sbjct: 258 SQVRLKDVAQIGLGGENYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 80/219 (36%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K   +    +         +   +    
Sbjct: 816  ERYNGVSAMEIQGQAAPGKSTGQAMAAMETLAKKLPVGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    + G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATMRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 58/521 (11%), Positives = 132/521 (25%), Gaps = 36/521 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   + + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLKDEKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSQRQHANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +        ++         +  +     ++  +A      ++  R   +G++    
Sbjct: 650  MFGRYGSYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMASKDP 709

Query: 182  QRLGSH----RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               G          Q     D  +   L  T   +     +                   
Sbjct: 710  TLQGVRPNGLNDTPQYKVNIDREKANALGVTADAIDQTFSIAW----------------- 752

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 V + ++  G           P    P     +                       
Sbjct: 753  -ASKYVNNFLDTDGRIKKVYVQADAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTYG 811

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     V    I    A          A    A      +      +  + + +   
Sbjct: 812  SPKLERYNGVSAMEIQGQAAPGKSTGQAMAAMETLAKKLPVGIGYSWTGLSFQEIQSGS- 870

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                     AI   +V + L  +             + L VI  L   ++ G    +   
Sbjct: 871  ---QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATMRGLENDVFFQ 927

Query: 418  AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  + 
Sbjct: 928  VGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVMP 987

Query: 477  LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            L      G  +       +   ++ + F AI ++    + I
Sbjct: 988  LAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028


>gi|296170831|ref|ZP_06852396.1| protein-export membrane protein SecF [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295894520|gb|EFG74260.1| protein-export membrane protein SecF [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 421

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 130/318 (40%), Gaps = 15/318 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     A + +  R    GIS      ++  +   G  +GIDF GG  + + A
Sbjct: 32  RHSFLSRLYTGTGAFEVVGRRRLWFGISGGIVAVALASIILRGFTFGIDFNGGTTVSMPA 91

Query: 586 ---NRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEM 637
                 V  S V          D       G                   +  +  + + 
Sbjct: 92  AGATGQVQTSQVSDVFRKAVGRDPESVVIVGNGASATVQIRSETLSNDQTAKLRNALFDA 151

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K T+  P     +   V      ++  K ++ +++    + +YI +R++ Y  L AI
Sbjct: 152 FGPKGTDGKPSRQAISDSAVSETWGDQITTKALIALVVFLALVGLYITVRYERYMTLAAI 211

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSI 755
             +  D+T T G ++L G E     V  +LT++G+S+ D V+V+D++ +N     +TT  
Sbjct: 212 AAMFFDLTVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRR 271

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAAS 810
           +F +  + +IN+T  RS+ TS+   + VL +      + G   +   A+    GI++   
Sbjct: 272 TFAEQANLAINQTFMRSINTSLIGVLPVLALMVVAVWLLGVGTLKDLALVQLIGIMIGTY 331

Query: 811 SSIFIAAPILLFIYDWRA 828
           SSIF A P+L+ + +   
Sbjct: 332 SSIFFATPLLVSLRERTE 349


>gi|296155955|ref|ZP_06838794.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. Ch1-1]
 gi|295893461|gb|EFG73240.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. Ch1-1]
          Length = 1076

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/680 (10%), Positives = 171/680 (25%), Gaps = 40/680 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P               + +    
Sbjct: 10  RPIFASVISIVIALGGVLAMF-----ALPVAQYPDITPP-------------QITITASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   +        +   S       I + F +    +     V  
Sbjct: 52  PGASADVVANNVAAPIEQQVNGADSMIYMTSSSSSTGSLTINVFFRNGTNPDLAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    +   +    +    +++           +   +       +D +   
Sbjct: 112 RVNLALPQLPQSVQSQGVQVQKKSSAFMMVVAVYSPDNRFDSTYVANYANVYVLDALKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ QL  T   +       N        G        
Sbjct: 172 PGANQASIFGTPDYAMRIWLRPDRMAQLGITATDVQNAVANQNQQFAVGRLGQAPTGLPV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V     +S                   + I     GA                  
Sbjct: 232 EQSFAVTTSGRLS------------SPAEFDNIIIRASNNGAAIVRLKDVGRAELGQKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +            A ++          +          
Sbjct: 280 SIRSRFQGKPATVIAIYQQPGANALDVSMQVRATLADMKRSFPEGIDYNIAMDTTDFTRA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV+IV+FM +   +  L+   ++ ++++ T   ++ LG ++ + ++
Sbjct: 340 SIADVVKTFFEAVLLVVIVVFMFLQSWRATLIPVLAVPVSILGTFMGMATLGFSINMLTM 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473
            G+VL IG+ VD  I+V E +    R    S   +             TI        + 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMREFGLSPNAAAKRAMDEVSGPVVTIVLVMCAVFVP 459

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   + FAIT+ +S+++S   A+++  A+   +++ +               
Sbjct: 460 VAFLGGITGQMYKQFAITIAISVVLSGIVALTLSPALAAVLLKPQAHAKHRFFQWFDNAF 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                                L     + LL    +          +          +  
Sbjct: 520 ARVTAGYGRAVTLTIRRFGIALLLFAGMVLLAVTMMRSIPHAFLPPEDQ-GYLLGAVIMP 578

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
             ++L+          ++  ++  +  +    G S+   + +         +       +
Sbjct: 579 DSASLDRTGRVSSRVTDYFAKQAGVGSVTVVDGYSLLDNQTMNNASTFFVGLKGFDERYS 638

Query: 654 TEIVGPKISRELIRKGIVGV 673
              +  + +  L+      +
Sbjct: 639 WANIRTQNAHALLLGAYRAL 658



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/196 (17%), Positives = 82/196 (41%), Gaps = 8/196 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             L  +K+   E +  +   +T         ++++     V++  I + +++     W  
Sbjct: 312 ATLADMKRSFPEGIDYNIAMDTTDFTRASIADVVKTFFEAVLLVVIVVFMFLQ---SWRA 368

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  +  + + I  T    A  G   N+  +  ++  IG  V+D +VV + + +NM+ + 
Sbjct: 369 TLIPVLAVPVSILGTFMGMATLGFSINMLTMFGMVLAIGIVVDDAIVVIENVERNMREF- 427

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             +S      ++++E  G  V   +      +P+A  G   G +   FAI +A  +V++ 
Sbjct: 428 -GLSPNAAAKRAMDEVSGPVVTIVLVMCAVFVPVAFLGGITGQMYKQFAITIAISVVLSG 486

Query: 810 SSSIFIAAPILLFIYD 825
             ++ ++  +   +  
Sbjct: 487 IVALTLSPALAAVLLK 502



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 61/165 (36%), Gaps = 7/165 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +  +   + + + +  ++ +W   +G +  +   +   L    L G+  ++     +  L
Sbjct: 877  LVFVFGLVMVFLILAAQYERWSLPVGVLMAVPFALFGALLAILLRGLNNDVYFQIGLTML 936

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +  +  + +++++     +       S  D    +  + L   V TS A  +  +P+A+ 
Sbjct: 937  VALAAKNAILIFEFA---VLNRAQGASPFDAAVTAARDRLRPIVMTSFAFILGCVPLAIA 993

Query: 790  GGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G+      S    +  G++ A   ++F        +     + A
Sbjct: 994  TGASQNSRHSIGTGVIGGMLGATGVAVFFIPMFFFLLESANERRA 1038


>gi|53718453|ref|YP_107439.1| RND family acriflavine resistance protein [Burkholderia
           pseudomallei K96243]
 gi|167821686|ref|ZP_02453366.1| putative RND family acriflavine resistance protein [Burkholderia
           pseudomallei 91]
 gi|167901514|ref|ZP_02488719.1| putative RND family acriflavine resistance protein [Burkholderia
           pseudomallei NCTC 13177]
 gi|167909760|ref|ZP_02496851.1| putative RND family acriflavine resistance protein [Burkholderia
           pseudomallei 112]
 gi|254187552|ref|ZP_04894064.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei Pasteur 52237]
 gi|52208867|emb|CAH34806.1| putative RND family acriflavine resistance protein [Burkholderia
           pseudomallei K96243]
 gi|157935232|gb|EDO90902.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 1066

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 157/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       IT++FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITEATLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        + A      +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNSSRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     +++   
Sbjct: 258 SQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 79/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T ++   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQTENMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 63/519 (12%), Positives = 136/519 (26%), Gaps = 38/519 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLTQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSDQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  L++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLRGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +N     +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQQTENMGPIEAALEAARLRLRPILMTSLAFILGVM 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             L      G  +       +   ++ + F AI ++    
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|260777573|ref|ZP_05886466.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605586|gb|EEX31871.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio coralliilyticus ATCC BAA-450]
          Length = 1050

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 80/692 (11%), Positives = 192/692 (27%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLAV-----LPVAEYPRISPP-------------SVSVSAF 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEAVEQAIADPIETSVNGVEDMIYMSSKSANDGSYNLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++          +       +     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPNGKYNDQFLINYVNLNLKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ +       N        G      +
Sbjct: 170 VKGISEVNVLGGGEFAMRVWLDPEKMANLNLTTSDVHSALAEQNVQVAAGRVGSAPYSSA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +  +              +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRLESVD-------------EFENVVLRANSDGSTIYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                   +   +    S ++  +   + +    L   L                     
Sbjct: 277 YDGTGKFRSQDASIVTLSLQSGANALESGKEVMELLEDLSVNFPEGLAYETSYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A + L G T+   +
Sbjct: 337 ESIKGVVKTLVEAILLVIAVTYLFLGSARATLIPVIAIPVSLIGTFAFMQLTGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +  L   
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSISPRKATLIAMKEVTGPIITSTLVLLAVF 456

Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +    L    G   R FA+T+ +S++IS   A+++  A+   +         +  K+ + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTARWFKAFNG 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++    V   +  +  S     T       + KG + + V  
Sbjct: 517 GLERVTNRYGQVAGYLVKKSLLLVVFFVVAVAAVSFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS   +    L          DG              S     +   +    T  
Sbjct: 577 PDSASLSRTEATTAQLAKMIEQEPGIDGITVANGYSLLTGAASSNGATLFIKLHDWETRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +   +  +I+   + +    V+ + 
Sbjct: 637 G-FEGEHSASAIANRINGRSMMQLPQAVVFAM 667



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 78/197 (39%), Gaps = 7/197 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                   +LE +     E +   T  +T +   +  + +++  +  +++      +++ 
Sbjct: 303 ESGKEVMELLEDLSVNFPEGLAYETSYDTTVFVAESIKGVVKTLVEAILLVIAVTYLFLG 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L  +  + + +  T  F  L G   N   +  ++  IG  V+D ++V + + 
Sbjct: 363 ---SARATLIPVIAIPVSLIGTFAFMQLTGFTINTVTLFGLILAIGIVVDDAILVIENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
                   SIS R     ++ E  G  + +++      LP+A+  G        FA+ + 
Sbjct: 419 DTTMAKDPSISPRKATLIAMKEVTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTIC 478

Query: 803 FGIVVAASSSIFIAAPI 819
             +V+++ +++ ++  +
Sbjct: 479 ISVVISSINALTLSPAL 495



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 57/184 (30%), Gaps = 9/184 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIY---IWIRFKWYFALGAITTLILDITKTL 708
               E  G      L     +    +   + IY   +     W   L  I  + +    + 
Sbjct: 856  YQYEWTGMAYQEVLAGNQAI-FAFALALIFIYLFMVAQYESWSIPLAIILVVPIATLGSF 914

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                L G   NL A   ++ LI  +  + +++ +  +  ++      +  D   K     
Sbjct: 915  LALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK--VEREDKDAAINDAAVKGGKLR 972

Query: 769  LGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  TS +  + + P+    G+      S  I +  G++    +  F+       +  
Sbjct: 973  FRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYALVQR 1032

Query: 826  WRAK 829
             R K
Sbjct: 1033 QREK 1036


>gi|251790628|ref|YP_003005349.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           zeae Ech1591]
 gi|247539249|gb|ACT07870.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           zeae Ech1591]
          Length = 1047

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 184/686 (26%), Gaps = 49/686 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  M+   G L  L     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIMVMLTGTLAIL-----KLPIAQYPTIAPPA-------------VQITANY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +   +    ++  + + K      +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTLQDTVTQVIEQNMNGIDKLLYMSSNSDSSGTVQITLTFDADANPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++     D       + S  +     D I   
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVQKSSSSFLMVLGFVSDDDNMTQQDISDFVGASIKDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     TT+ +     + NN       G        
Sbjct: 170 RGVGDTQLFGAQ-YAMRIWLDPDKLNNYQLTTSDVVSAIQVQNNQIAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        I       
Sbjct: 229 KLNASIIAQTRL-------------NSPEQFGKILLKVNQDGSQVRLNNVARIELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A L++        +           
Sbjct: 276 STIARYNGRPASGLGIKLATGANALDTASAVKAEIAKLQSTFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIYEVVKTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDI 525
           + F GG      R F+IT+  ++++S+  A+ +  A+   I         +       + 
Sbjct: 456 MAFSGGSTGAIYRQFSITIVSAMVLSVLVAMILTPALCATILKPLANHGEKKGFFGWFNR 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                     + +A        +     ++ +   +            + +G +   V  
Sbjct: 516 LFDKSTHHYTNSVANILRSTGRYVFLYLVIVAGLGLLFTRIPSSFLPQEDQGVLLTMVQL 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                    +  L+ +    ++ +  + +  F V      G           +K      
Sbjct: 576 PVGATQESTQKVLDQVNDYYLNSEKDNVKSVFTVNGFGFAGRGQNMGIAFASLKDWDERS 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIV 671
              + +            ++    ++
Sbjct: 636 GAANKVDAIIGRAFGAFSQIKEAMVI 661



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 75/194 (38%), Gaps = 6/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                ++    K+    P               +  I + +  ++ + + + + +++  +
Sbjct: 301 DTASAVKAEIAKLQSTFPAGLKVVYPYDTTPFVKISIYEVVKTLLEAIVLVFVVMYLFLQ 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + +  T    + FG   N   + A++  IG  V+D +VV + +    
Sbjct: 361 NFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S ++   KS+ +  G  V  ++      +PMA  GGS       F+I +   +
Sbjct: 419 VMAEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFSGGSTGAIYRQFSITIVSAM 478

Query: 806 VVAASSSIFIAAPI 819
           V++   ++ +   +
Sbjct: 479 VLSVLVAMILTPAL 492



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 63/184 (34%), Gaps = 7/184 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWYFA 693
            E +         L      +  G      L       +II  + +  L    +   W   
Sbjct: 836  EAMALMEELAAQLPPGIGFDWTGMSYQERLAGNQAPALIIISAVVVFLCLAALYESWSIP 895

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   +    L G+E ++     +LT IG S  + +++ +  +  M+    
Sbjct: 896  FSVMLVVPLGVFGAVVAAGLRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 955

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + V+P+      G     +    +  G++ A  
Sbjct: 956  G--LIEATLDAVRMRLRPILMTSLAFILGVVPLVFSTGAGSGAQNAVGTGVMGGMITATV 1013

Query: 811  SSIF 814
             +I+
Sbjct: 1014 LAIY 1017


>gi|167737368|ref|ZP_02410142.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 14]
 gi|254296326|ref|ZP_04963783.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 406e]
 gi|157805901|gb|EDO83071.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei 406e]
          Length = 1066

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 157/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       IT++FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITEATLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        + A      +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNSSRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     +++   
Sbjct: 258 SQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 135/519 (26%), Gaps = 38/519 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLTQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSDQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  L++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  STLRGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVM 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             L      G  +       +   ++ + F AI ++    
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|269925201|ref|YP_003321824.1| protein-export membrane protein SecF [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269788861|gb|ACZ41002.1| protein-export membrane protein SecF [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 317

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 148/301 (49%), Gaps = 15/301 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I  +R R+    +S+L  I     L   GL  GIDF+GG    +   +PV +  VRS L 
Sbjct: 2   IDIVRWRYAFYLLSLLIIIPGTIYLLLFGLRLGIDFEGGTFWQIQFEKPVRIEDVRSALA 61

Query: 600 SLQIGDISFQNFD-----GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                +   Q+F       +      +  +  +    +     +++ +            
Sbjct: 62  QAGYNEAFVQSFGQQSNTAQGTVTRGVSMRLPEIKENSPEKAKLEQILKSRFGNYEELVF 121

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLG 709
             VGP + RE+  + IV + ++++ +L YI   F+     + + + AI  ++ D+   +G
Sbjct: 122 TSVGPAVGREIRNRSIVAIALASLGILGYIAFAFRKVSHPFRYGICAIIAMLHDVLVVVG 181

Query: 710 FFAL----FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            FA+    FG+E +   V A+LT+IG+SV+D +VV+DR+R+N +L     SF  +++ S+
Sbjct: 182 IFAILGKHFGVEIDALFVTALLTVIGFSVHDTIVVFDRIREN-QLRRYGESFEQIVNISL 240

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +TL RSV TSM    ++L +  +GG+ I  F + +  GIV    SSIF A+ +L+   +
Sbjct: 241 LQTLVRSVNTSMTVIFTLLALYFFGGTTIKHFVLALLIGIVSGTYSSIFNASLLLVSWEN 300

Query: 826 W 826
            
Sbjct: 301 K 301


>gi|2109271|gb|AAB58161.1| CeoB [Burkholderia cepacia]
          Length = 1027

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVENMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   +   +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDIARIQLDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  L+   ++ +++I T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLAFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 48/121 (39%), Gaps = 6/121 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+      G  +  +  + + FG+
Sbjct: 960  -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018

Query: 806  V 806
            +
Sbjct: 1019 L 1019



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 89/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 252 IVVKTTPDGGVTHLRDIARIQLDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  +L 
Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLIAVPVSIIGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGM 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           + R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 428 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 487 SLTLSPALSAILLK 500


>gi|83593098|ref|YP_426850.1| protein translocase subunit secF [Rhodospirillum rubrum ATCC 11170]
 gi|83576012|gb|ABC22563.1| protein translocase subunit secF [Rhodospirillum rubrum ATCC 11170]
          Length = 351

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 152/302 (50%), Gaps = 3/302 (0%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               F  +       F+ +R   +  S    +  +  L   GL+ GIDF GG+ +     
Sbjct: 1   MPRPFARLTADFHYDFLVSRARVMAASAALLLVCLLALGLRGLDLGIDFTGGLVVEARTA 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             +D   +R +L +  +G++    +  +             +     +L+ ++   T + 
Sbjct: 61  TAMDPVDLRQSLRASVVGEVDVTTYGEDG--RSVTVRVGRQTGGDQAMLQALEGVKTALG 118

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
             +T + T +VGP +  E    G++ V ++ + +  Y+W+RF W++ALG +  L  D+  
Sbjct: 119 EGATYRRTNLVGPTVGGEATIAGLLTVALALVLIAAYVWLRFDWHYALGVVLALSHDVVA 178

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            LG +ALF I F+LT++AA+LT+  YS+ND VV++DR+R+ + L         +++KSIN
Sbjct: 179 VLGLYALFQIPFDLTSIAALLTVACYSINDTVVIFDRVREELALTP-DAPLATVVNKSIN 237

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            TL R++  S +  +++  +A+ GG  +  FA+ + +G VV   SSI++A P L+     
Sbjct: 238 RTLARTIVLSGSTLVTMACLALLGGPQLRGFALALIWGTVVGTLSSIYVAVPALMAFRGR 297

Query: 827 RA 828
             
Sbjct: 298 SK 299


>gi|119356608|ref|YP_911252.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353957|gb|ABL64828.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 1055

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 68/552 (12%), Positives = 154/552 (27%), Gaps = 34/552 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++           ++++P       I+                 
Sbjct: 8   RPVFAWVISICIMLGGIIAI-----NILPVEQYPRIAAPT-IN--------ISASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +              N  IT++F      +    +V   LQ 
Sbjct: 54  SEAVENSVTQVIEQALTGIDHLRYFSSGSDSNGNVTITVTFEPEANPDIAQVQVQNKLQS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    ++  +  T      +++     D         +  I  + +D +       
Sbjct: 114 IMSNLPQQVQQQGIKVTKGDTGFLMVVGVYSDDPRIDEYAMNDFINSKLLDPLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP R+     TT ++       N        G            
Sbjct: 174 NIQVFG-QPYSMRIWLDPHRMASFNLTTTEVQTAITAQNADVSAGQLGGTPSVPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      +        +        +   +       
Sbjct: 233 TITAQSRL-------------KSVGDFEKIMLKVNTDGSQVRLRDVARVELGVQNYDMTT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T          L+    P    +           S   
Sbjct: 280 RFNGKPAAGMAITLATGANALNTANLVKAKMTALKPLLPPGVQIVYPFDTTPFVKTSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+F+ +   +  LV   ++ + ++ T  ++S+ G ++   S+  +V
Sbjct: 340 VVHTLIEAVILVFFVMFLFLQNFRATLVPTIAVPVVLLGTFGVMSVFGFSINTLSMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +      +  S   +      +  S  I  + + + +   + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEEERLSPLEATKKSMKQISSALIGIALVLSAVFVPMAFF 459

Query: 480 FG--GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
            G  G   R F+IT+  ++L+S+  A+ +  A+    +   +   ++        F    
Sbjct: 460 KGSTGTIYRQFSITIVSAMLLSVLVALILTPALCASLLRPVRADGNLYGTGPLGRFFAWF 519

Query: 537 CIAIQFMRARFW 548
                  R R+ 
Sbjct: 520 NGKFNRNRERYV 531



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 91/240 (37%), Gaps = 12/240 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      +Q  D++ +        +        +++    +++     +  ++
Sbjct: 258 SQVRLRDVARVELGVQNYDMTTRFNGKPAAGMAITLATGANALNTANLVKAKMTALKPLL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I   +  +I + I +   +++  + +   L     + + + 
Sbjct: 318 PPGVQIVYPFDTTPFVKTSIEGVVHTLIEAVILVFFVMFLFLQNFRATLVPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLID 762
            T G  ++FG   N  ++ A++  IG  V+D +VV    +R+ +  +L     S  +   
Sbjct: 378 GTFGVMSVFGFSINTLSMFAMVLAIGLLVDDAIVVVENVERIMEEERL-----SPLEATK 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+ +     +  ++      +PMA + GS       F+I +   ++++   ++ +   +
Sbjct: 433 KSMKQISSALIGIALVLSAVFVPMAFFKGSTGTIYRQFSITIVSAMLLSVLVALILTPAL 492



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/314 (11%), Positives = 100/314 (31%), Gaps = 22/314 (7%)

Query: 536  DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ---LGVLANRPVDLS 592
                I     +    G+SI     ++   +           G I+   +   A   ++ S
Sbjct: 727  PQFKIDIDHEKASAFGVSIADINSTLQTAWGSSYVNDFLHDGRIKKVFMQGDAPYRMNPS 786

Query: 593  VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             V         GD+   +      +          +   +  ++              + 
Sbjct: 787  DVDIWHVRNSNGDMVPFSSFSSGRWSFGSPKLERFNGISSVNIQGAPAPGVSSGDAMAVM 846

Query: 653  NTEIVGPKISRELIRKGI----------VGVIISAIAMLIYI---WIRFKWYFALGAITT 699
                        +   G+            ++ +   + +++    +   W   +  +  
Sbjct: 847  AKLAGTLPEGFGIEWTGLSYEERAAGQQTVLLYTLSLLFVFLCLAALYESWSVPIAVMLV 906

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + L +  T+    L G+  ++     +LT +G +  + +++ +  +    LY + ++ ++
Sbjct: 907  VPLGVLGTVLATFLSGLSNDVYFKVGLLTTVGLTAKNAILIVEFAK---TLYESGMNLQE 963

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +  +  + L   V TSMA  + V P+A     G +   +  I +  G++     +IF  
Sbjct: 964  AVLSAAGQRLRPIVMTSMAFILGVTPLAFSSGAGSASQHAIGIGVIGGMLSGTILTIFFV 1023

Query: 817  APILLFIYDWRAKN 830
                + +    A+ 
Sbjct: 1024 PLFFILVQSRFARK 1037


>gi|319782574|ref|YP_004142050.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317168462|gb|ADV12000.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1047

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 84/685 (12%), Positives = 186/685 (27%), Gaps = 41/685 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL      L    + ++P   P                     +
Sbjct: 8   RPIFAWVIAIVIMLGGLLA-----LTSLPISQYPQIAPTTV---------NISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +     +  ITL+F  +   +    +    LQ 
Sbjct: 54  AQTVENSVTKVIEQGMTGIDNLDYMTATSTSTGSASITLTFTTAADPDTAQVQTQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    + N +  +      +++          ++ + +  +     D +   E   
Sbjct: 114 VQSQLPQVVQSNGITVSKSSTGFLMVIGFVSTDGKMNSTDLADYVDATVNDTLKRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +     + ++      N        G    R       
Sbjct: 174 STQLFGSG-YAMRIWLDPDQLAKYALMPSDVATAIEAQNTQVSAGQLGGLPARKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +                 +    I   +             +           
Sbjct: 233 TVTAKSRL-------------QTAEQFRNIILKSQTDGSLVRLNDVATVELGAESYTTQA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T E      A L +        +           S   
Sbjct: 280 NYNGKPAAGVAVNLATGANAINTAEAVRSTIARLSSTFPQGVEVVYPYDTSPFVRLSIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+F+ +   +  ++   ++ + ++ T  +LSL G ++   ++  +V
Sbjct: 340 VVKTLAEAIVLVFLVMFIFLQNLRATIIPTIAVPVVLLGTFGVLSLFGYSVNTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +           +           V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPKEATRKSMHEITGALIGIATVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F++T+  ++++S+  A+ +  A+   I+R  K  +    P   F  + D 
Sbjct: 460 GGSTGIIYRQFSVTIVSAMVLSVLVALVLTPALCATILRPPKDHATQTGPFGWFNRVFDR 519

Query: 538 IAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
             + +         R+  + V    +                  + +G +   V      
Sbjct: 520 GTLAYRDGSHGIISRSWRFLVVFLAIVVAVGWMFARLPSSFLPEEDQGILITSVQLPVGA 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                   L  +    ++ +    +  F        G           +K       P S
Sbjct: 580 TQDRTERVLAEVTDHYLNQEKDVVDGVFTASGFGFGGAGQNVGIAFVRLKDFDLRKSPAS 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
             Q           ++    +  + 
Sbjct: 640 AAQAIAGRAMGAFSKIRDAQVFALA 664



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 76/201 (37%), Gaps = 8/201 (3%)

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           + + +   G    L         + A    +  +     + V +    +T         E
Sbjct: 280 NYNGKPAAGVAVNLATGANAINTAEAVRSTIARLSSTFPQGVEVVYPYDTSPFVRLSIEE 339

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           +++     +++  + M I++         +     + + +  T G  +LFG   N   + 
Sbjct: 340 VVKTLAEAIVLVFLVMFIFLQ---NLRATIIPTIAVPVVLLGTFGVLSLFGYSVNTLTMF 396

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A++  IG  V+D +VV + +     +    +S ++   KS++E  G  +  +       +
Sbjct: 397 AMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEATRKSMHEITGALIGIATVLSAVFV 454

Query: 785 PMAVWGGSV---IGSFAIPMA 802
           PMA +GGS       F++ + 
Sbjct: 455 PMAFFGGSTGIIYRQFSVTIV 475



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 82/266 (30%), Gaps = 9/266 (3%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
             N+ +  +   +  V       +            G    + ++G     ++     G S
Sbjct: 773  PNFRMQPEDLDKWQVRNASGAMVPFSAFASSHWTFGSPRLERYNGSAAVEIQGAAATGVS 832

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                                               + +    +  ++  + +     +  
Sbjct: 833  SGAAMDEIDKLVAQLPAGYSHEWTGLSHQEKLSGNQALSLYAISALVVFLCLA---ALYE 889

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      + ++ + I   L   +LFG   ++     +LT IG +  + +++ +   +  
Sbjct: 890  SWSIPFAVMLSVPIGIFGALLAASLFGQSNDVYFKVGLLTTIGLAAKNAILIVEFAIE-- 947

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +   +   ++  + L   + TS+A  + VLP+A+    G     S  I +  G+
Sbjct: 948  -RQAAGMGLVEATLEAARQRLRPILMTSLAFILGVLPLAIASGAGSGAQNSVGIGVMGGM 1006

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            + A    +F+   + + +       A
Sbjct: 1007 IAATVIGVFLVPLLFVTVRRIFKGRA 1032


>gi|294650748|ref|ZP_06728098.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292823340|gb|EFF82193.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 1041

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/685 (11%), Positives = 178/685 (25%), Gaps = 44/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 8   RRPIFAWVIAIFIILFGLLSI-----PKLPIARFPSVAPP-------------QVNISAV 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +I+ +F      +     V 
Sbjct: 50  YPGATPKTINDSVVTLIERELSGVKNLLYYSSTTDTSGTAEISATFKPGTDVDMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ + ++L    ++  L   +     ++L            I+ +  ++R  ++++  
Sbjct: 110 NKIKAIEARLPQIVRQQGLQVESSSSGFLMLVGIKSPNGQYSEIDLNDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 170 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNAAIRENNVEIAPGRLGDMPAEQG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++  I              +        +            N+      
Sbjct: 229 QLITIPLSAQGQLDSIE-------------QFKNISLKSKTSGSVIRLSDVANVEIGSQA 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T +        L           +         
Sbjct: 276 YNFAILEDGKPSTAAAIQLSPGANAVKTADAVREKIEELNINLPEGMQFSIPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T A++ + G ++ + +
Sbjct: 336 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFAVMLVAGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +      +         S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLPPKEATSKAMKEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      + F +TM +SIL S   A+ +  A+   I++            + F 
Sbjct: 456 PMAFASGSVGIIYQQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL---ANRPV 589
              D +  ++ R     +  SI   +  + +               +             
Sbjct: 516 RSFDKVTKKYERILLKVIKHSIPMMVIFVVITGLTFAGMKYWPTAFMPEEDQGWFLTSFQ 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S   +      +        D             G S +   V              S
Sbjct: 576 LPSDATTERTKNIVNQFEDSLKDNPNVKNNTTILGWGFSGSGQNVAVSFTTLKDFKDRTS 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
           +                    + V+
Sbjct: 636 SASEMTNAVNAEMANSKEGATMAVL 660



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-W 685
            + A    +E +   + E +  S   +T         ++I   +  +++  I M +++  
Sbjct: 303 TADAVREKIEELNINLPEGMQFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHN 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +R+    A+ A   L      T     + G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 363 VRYTLIPAIVAPIAL----LGTFAVMLVAGFSINVLTMFGMVLAIGIIVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMA 802
               + T  +  ++   K++ E     +  ++      LPM    G   I    F + M+
Sbjct: 418 -ERIMATEGLPPKEATSKAMKEITSPIIGITLVLAAVFLPMAFASGSVGIIYQQFTLTMS 476

Query: 803 FGIVVAASSSIFIAAPI 819
             I+ +A  ++ +   +
Sbjct: 477 VSILFSALLALILTPAL 493



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 84/235 (35%), Gaps = 17/235 (7%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            + + V LS V +   +      +  N     +      +      A   +  ++ +    
Sbjct: 787  SGQLVSLSEVVTPEWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGDAMREMENLITQLPKG 846

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
            I    T  + +    +     +      +++S + + + +   ++ W   L     L++ 
Sbjct: 847  IGYEWTGISLQEKQSESQMAFL------LVLSMLVVFLVLAALYESWAIPLS--VMLVVP 898

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  +  
Sbjct: 899  LGIFGAIVAIMTRGMMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEAT 955

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             ++    L   + TS+A    V+P+ +  G       +    +  G++ A   +I
Sbjct: 956  VQAAKLRLRPILMTSLAFTCGVIPLVIASGASSETQHALGTGVFGGMISATILAI 1010


>gi|15895545|ref|NP_348894.1| preprotein translocase subunit SecF [Clostridium acetobutylicum
           ATCC 824]
 gi|15025282|gb|AAK80234.1|AE007729_1 Preprotein translocase subunit SecF [Clostridium acetobutylicum
           ATCC 824]
 gi|325509693|gb|ADZ21329.1| preprotein translocase subunit SecF [Clostridium acetobutylicum EA
           2018]
          Length = 300

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 72/288 (25%), Positives = 136/288 (47%), Gaps = 2/288 (0%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           +      GIS+      I  +   G+  G   + GI      +  + +    +  +  +I
Sbjct: 6   KHTKVWFGISLTIIFLGIAFMIYRGVTTGKPLEFGIDFVGGNSMDIKIGKSFNKTDVEKI 65

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            D   ++          ++ +                +    +    + + E +G  I +
Sbjct: 66  VDKYIKDSTITTVNNTEVEIKSSTMTDAIGNKIFKDMQKKYNLKSKALVSQEKIGGTIGQ 125

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  K ++ + I+ + +L+YI  RF++ F + A+ +L+ D+  TL  + +F I  N   +
Sbjct: 126 ELKTKALIALAIALVIILLYIAWRFEFKFGVAAMISLVHDVLVTLAVYGIFAIPLNSPFI 185

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A +LT++GYS++D +VV+DR+R+N + +   +S  ++ D SINETL RS+YT +   I+V
Sbjct: 186 AGMLTIVGYSMSDTIVVFDRIRENSRKH-RRMSTSEIADFSINETLTRSIYTVLTVLIAV 244

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             + V+    +  F  P+  GIV    SSIFIA+P+ +   +   K  
Sbjct: 245 SSVHVF-VPSVRDFTKPLLVGIVSGCYSSIFIASPLWVIFKERANKKK 291


>gi|256033034|gb|ACU57134.1| inner membrane transporter protein [Pseudomonas putida]
          Length = 1049

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 77/691 (11%), Positives = 176/691 (25%), Gaps = 51/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G L        +  + ++P+                  + ++V  
Sbjct: 8   RPIFAWVLAIVAMLAGALSLA-----KMPISQYPNIAAPA-------------VSIQVSY 49

Query: 63  DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +Q       ++  S L              +  I ++F      +    +V  
Sbjct: 50  PGASAQTVQDTVVQVIEQQLSGLDGFRYMSAESASDGSMTIIVTFEQGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  + ++  L     +    ++             +    I  Q  D I   
Sbjct: 110 KLQLATPRLPEEVQRQGLRVVKYQMNFFLVMSLVDRSGKLDNFDLGNLIASQLQDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   ++      N        G    R   
Sbjct: 170 PGVGDFQLFGSP-YAMRIWLDPGKLNSYQLTPTDVASAIREQNVQVSSGQLGGLPTRSGV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K  ++                +    +        +                
Sbjct: 229 QLNATVLGKTRMT-------------TPSQFDEILVKVNPDGSQVRVKDVGRAELGADSF 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T++    L    +A        I           
Sbjct: 276 AISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYLPDGVEVIYPYDTTPVVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ALL   G  + + ++
Sbjct: 336 SIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLLATFALLPYFGLNINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 YAMVLAIGLLVDDAIVVVENVERLMHDEGLSPLEATRKSMDQISGALVGIGMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      + FAIT+ + + +S+  A+    A+ + I           R   +   
Sbjct: 456 MAFFGGSAGIIYQQFAITIVVCMGLSILVALVFTPALCVTILKAPEGNSHHERKGFLGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +         + +   ++                  + +G + + V
Sbjct: 516 NRIFDRGTRRFERGVGAMLKGRGRYLLAFLLITGGTGYLFTQIPKAFLPNEDQGLMMIEV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L+ ++    + +    E    V      G       VL   K    
Sbjct: 576 RTPANASAERTEGVLQEVRDYLANDEGALVEHFMTVNGFNFAGRGQNSGLVLITFKDWKE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                  + +      +   ++    ++  +
Sbjct: 636 RHGAGQDVFSIAQRANQHFAKIKDASVMAFV 666



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V           IS Q  D     L       G+ +     ++ + ++    +
Sbjct: 258 SQVRVKDVGRAELGADSFAISAQYKDSPTASLALRLSTGGNLLETVDAVKKLMEQQKAYL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P             +    I   +  +  + + + + +++    +   L     + + + 
Sbjct: 318 PDGVEVIYPYDTTPVVEASIESVVHTIFEAVVLVFLVMYLFLQSFRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T      FG+  N+  + A++  IG  V+D +VV + +     ++   +S  +   KS+
Sbjct: 378 ATFALLPYFGLNINVLTMYAMVLAIGLLVDDAIVVVENV--ERLMHDEGLSPLEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  V   M      +PMA +GGS   +   FAI +   + ++   ++     + + 
Sbjct: 436 DQISGALVGIGMVLSAVFVPMAFFGGSAGIIYQQFAITIVVCMGLSILVALVFTPALCVT 495

Query: 823 IYD 825
           I  
Sbjct: 496 ILK 498



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 78/259 (30%), Gaps = 10/259 (3%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +     + V  S   +         +         N L           
Sbjct: 778  RISPEDFDKWYVRNSLGQMVPFSAFATGEWVNGSPKLERYGGISSLNILGEPAPGYSTGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   + E++++    I    T  + E +       L+       +   I  L    +   
Sbjct: 838  AMIAIAEIMQQLPAGIGLSYTGLSYEEIQTGDQAPLLYA-----LTVLIVFLCLAALYES 892

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W   +  I  + L I   +       +  ++     ++T +G S  + +++ +  ++  +
Sbjct: 893  WSVPVSVIMVVPLGILGAVLATLWRDLTADVYFQVGLMTTVGLSAKNAILIVEFAKELYE 952

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                         ++    L   + TS+A    VLPMA+    G     S A  +  G++
Sbjct: 953  KE--GYPIVKAAIEAAKLRLRPILMTSLAFTFGVLPMAIASGAGAGSQHSIATGVVGGMI 1010

Query: 807  VAASSSIFIAAPILLFIYD 825
             A   ++F      + +  
Sbjct: 1011 TATVLAVFFVPLFYVVVVK 1029


>gi|317492753|ref|ZP_07951178.1| hydrophobe/amphiphile efflux-1 family RND transporter
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919276|gb|EFV40610.1| hydrophobe/amphiphile efflux-1 family RND transporter
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1048

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/689 (10%), Positives = 181/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL           ++++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIISLTGLLAI-----NTLPVEQYPNLAPPT-------------VRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       ITL+F           +V  
Sbjct: 50  PGASAQTLENTVTQIIEQNMTGLDGLLYMSSQSSSTGSASITLTFQAGINPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQG   KL  D ++  +  +   + S++              + +  +     D I   
Sbjct: 110 QLQGATRKLPQDVQQQGVTVSKSGDSSLMTVAFVSTDHSMTRQDIADYVASNLQDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L     TT  +       NN       G     +  
Sbjct: 170 DGVGSVDAFGSQ-YAMRIWLDPNKLNNYKLTTQDVVTAIKTQNNQIAVGQVGGTPSVNGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +                      +       
Sbjct: 229 ALNATMNAQSQL-------------QTPEQFRDITLRVNTDGSYVTLGDVATVELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L                      
Sbjct: 276 DYLSRYNGMPASGMSIKLASGANELATDKLVKAKLTELEQYFPHGLKVEYAYETTPFVQE 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIKDVVKTLFEAIFLVFLVMYLFLQNFRATLIPTIAVPVVLLGTYAVLYAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +     ++  S +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLSPREATRKSMAQIQSALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  +++ S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGTTGAIYRQFSVTIVSAMVFSVLVALILTPALCATLLKPIKKGEVHGQKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + +A     +    +   ++    +            ++ +G     +
Sbjct: 516 NRVFERSTHQYENGVARIVRNSGRTMLLYLLIIVGLAFAFTRLPTSFLPLEDRGVFMTQI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         +E ++   +  +  +    F +      G+     R+   +K    
Sbjct: 576 QLPVGSTQQQTLKVVEKVENYLLQSEKKNVVSVFSIIGSGPGGNGQNVARMFVRLKHWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              P  +             ++    +  
Sbjct: 636 RSNPDDSSFAIIDRATAEFNKIKEARVFA 664



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 89/247 (36%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +  D   +      + +        + +A  ++++    ++ +  
Sbjct: 258 SYVTLGDVATVELGAENYDYLSRYNGMPASGMSIKLASGANELATDKLVKAKLTELEQYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +E I+  +  +  +   + + +++  + +   L     + + + 
Sbjct: 318 PHGLKVEYAYETTPFVQESIKDVVKTLFEAIFLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T      FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTYAVLYAFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPREATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +     V  ++      +PMA +GG+       F++ +   +V +   ++ +   +   
Sbjct: 436 AQIQSALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVFSVLVALILTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 LLKPIKK 502



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 66/177 (37%), Gaps = 8/177 (4%)

Query: 655  EIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
            E  G      L       +  IS + + + +   ++ W      +  + L +   +    
Sbjct: 856  EWTGMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVLGAVCATW 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            + G+E ++     +LT+IG S  + +++ +   +   L+ +     +   ++    L   
Sbjct: 916  VRGLENDVYFQVGLLTIIGLSAKNAILIVEFANE---LHRSGKDLLEATLEACRLRLRPI 972

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + TS+A    VLPMA+    G     +    +  G+  A   +IF      + +   
Sbjct: 973  LMTSLAFIFGVLPMAISHGAGSGSQHAVGTGVLGGMFTATILAIFFVPVFFILVRRR 1029


>gi|254506667|ref|ZP_05118808.1| RND transporter, HAE1 family [Vibrio parahaemolyticus 16]
 gi|219550540|gb|EED27524.1| RND transporter, HAE1 family [Vibrio parahaemolyticus 16]
          Length = 1050

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 80/692 (11%), Positives = 187/692 (27%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAIALA-----ILPVAEYPKISPP-------------SVSVTAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSANDGSYNLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ +       N        G     D 
Sbjct: 170 VKGISEVSVIGGGEYAMRVWLDPEKMANLKLTTSDIHAALAEQNVQVAAGRVGAAPYNDV 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVGEFENVVLRANSDGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    +   L                     
Sbjct: 277 YDGSGKYRGQDASIVTLSLQSDANALESGQAVVEMLDKLSVNFPEGMEYEASYDTTLFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSISPRKATLIAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +   +L    G   R FA+T+ +S++IS   A+++  A+   +         +     + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTSRWFAVFNQ 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             +A   G    +  +  +     T       + KG + + V  
Sbjct: 517 GLEKITHRYGQVAGFLVKKAMLLGAFFLVAIAAVTFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS  +   E L          DG              +     +   ++   T  
Sbjct: 577 PDAASLSRTQEVTEQLVDMVEQEPGVDGVTVANGFAFMTGAAASNGASLFIKLEDWDTRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +T I      R  +      V+ + 
Sbjct: 637 ALEGDHSSTAIAQRINGRAAME-LPQAVVFAM 667



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 84/235 (35%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D S +    + + +        +++   + +  +  K++   P 
Sbjct: 262 VYLKDVARVELGKKFYDGSGKYRGQDASIVTLSLQSDANALESGQAVVEMLDKLSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                          E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GMEYEASYDTTLFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         SIS R     ++ E
Sbjct: 382 FAVMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPSISPRKATLIAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      LP+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 52/162 (32%), Gaps = 8/162 (4%)

Query: 674  IISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
              +   + IY   +     W   L  I  + +    +     L G   NL A   ++ LI
Sbjct: 877  AFALALIFIYLFMVAQYESWSIPLAIILVVPIATLGSFLALNLTGTPLNLYAQIGLVLLI 936

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
              +  + +++ +  +  ++     +   +               TS +  + + P+    
Sbjct: 937  ALAAKNAILIVEFAK--VEREEKDVPIDEAAVHGGKLRFRAVNMTSWSFILGIFPLIFAS 994

Query: 790  GGSVIG--SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G   +   S  I +  G++    +  F+       +   R K
Sbjct: 995  GAGHVSQNSLGISLIGGLLCVLLAGTFLIPGFYAVVQRQREK 1036


>gi|107025373|ref|YP_622884.1| hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|116693444|ref|YP_838977.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia HI2424]
 gi|170737279|ref|YP_001778539.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia MC0-3]
 gi|105894747|gb|ABF77911.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|116651444|gb|ABK12084.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia HI2424]
 gi|169819467|gb|ACA94049.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia MC0-3]
          Length = 1061

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   +   +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQSIREQNVQVAAGVIGASPSLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  L+   ++ +++I T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLAFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEGGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+      G  +  +  + + FG+
Sbjct: 960  -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 90/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 252 IVVKTTPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  +L 
Sbjct: 312 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++     +
Sbjct: 371 PLIAVPVSIIGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIEG---GM 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           + R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 428 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 487 SLTLSPALSAILLK 500


>gi|53725077|ref|YP_102138.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           ATCC 23344]
 gi|67641188|ref|ZP_00439972.1| AcrB protein [Burkholderia mallei GB8 horse 4]
 gi|121600315|ref|YP_991958.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           SAVP1]
 gi|124386431|ref|YP_001028405.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           NCTC 10229]
 gi|126448756|ref|YP_001079639.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           NCTC 10247]
 gi|167002673|ref|ZP_02268463.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           PRL-20]
 gi|254176944|ref|ZP_04883601.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           ATCC 10399]
 gi|254203820|ref|ZP_04910180.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           FMH]
 gi|254208798|ref|ZP_04915146.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           JHU]
 gi|254360149|ref|ZP_04976419.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           2002721280]
 gi|52428500|gb|AAU49093.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           ATCC 23344]
 gi|121229125|gb|ABM51643.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           SAVP1]
 gi|124294451|gb|ABN03720.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           NCTC 10229]
 gi|126241626|gb|ABO04719.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           NCTC 10247]
 gi|147745332|gb|EDK52412.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           FMH]
 gi|147750674|gb|EDK57743.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           JHU]
 gi|148029389|gb|EDK87294.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           2002721280]
 gi|160697985|gb|EDP87955.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           ATCC 10399]
 gi|238522062|gb|EEP85509.1| AcrB protein [Burkholderia mallei GB8 horse 4]
 gi|243061664|gb|EES43850.1| inner membrane multidrug efflux protein BpeB [Burkholderia mallei
           PRL-20]
          Length = 1066

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 157/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       IT++FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITEATLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        + A      +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNSSRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     +++   
Sbjct: 258 SQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 77/216 (35%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+ +A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVMLLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 136/519 (26%), Gaps = 38/519 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLTQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSDQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  L++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLRGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVM 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +L      G  +       +   ++ + F AI ++    
Sbjct: 987  LLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|239502566|ref|ZP_04661876.1| RND protein [Acinetobacter baumannii AB900]
          Length = 1036

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 83/672 (12%), Positives = 185/672 (27%), Gaps = 46/672 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 8   RRPVFAWVIAIFIILFGLLSI-----PKLPIARFPSVAPP-------------QVTISAV 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +I+ +F      +     V 
Sbjct: 50  YPGATPKTINDSVVTLIERELSGVKNLLYYSATTDTSGMAQISATFKPGTDVDMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQIVRQQGLQVEATSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 170 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNAAIRENNVEIAPGRLGDLPAEKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++ +              +        +            N+      
Sbjct: 229 QLITVPLSAQGQLNSVE-------------QFKNISLKSKTNGSVIRLSDVANVEIGSQA 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 276 YNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKVNLPEGMQFSIPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T +++ L G  + + +
Sbjct: 336 ISIEKVIHTLIEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFSVMLLAGFAINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +      +         S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLPPKEATSKAMKEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINP 527
            + F  G      + F +TM +SIL S   A+ +  A+   I       ++K        
Sbjct: 456 PMAFASGSVGIIYKQFTLTMSVSILFSALLALILTPALCATILKPIDEHHQKKGFFAWFD 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L      I F   +     + +   I +               +      +   +
Sbjct: 516 RTFDKLTKKYEVILFKVIKHTIPMMVLFIIITAATFAGMKFWPTAFMPEEDQGWFLTTFQ 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +        ++  + S Q+    K+    L +  G S     V     K   E   
Sbjct: 576 LPSDASTERTKSVVKEFEASIQDNPDVKSNTSILGWGFGGSGQNVAVAFTTLKDFKERKS 635

Query: 648 LSTIQNTEIVGP 659
            ++     I G 
Sbjct: 636 SASEMTNSINGT 647



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 77/197 (39%), Gaps = 10/197 (5%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-W 685
            +      +E +K  + E +  S   +T         ++I   I  +++  I M +++  
Sbjct: 303 TAEGVRAKIEELKVNLPEGMQFSIPYDTAPFVKISIEKVIHTLIEAMVLVFIVMYLFLHN 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +R+    A+ A   L      T     L G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 363 VRYTLIPAIVAPIAL----LGTFSVMLLAGFAINVLTMFGMVLAIGIIVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMA 802
               + T  +  ++   K++ E     +  ++      LPM    G   I    F + M+
Sbjct: 418 -ERIMATEGLPPKEATSKAMKEITSPIIGITLVLAAVFLPMAFASGSVGIIYKQFTLTMS 476

Query: 803 FGIVVAASSSIFIAAPI 819
             I+ +A  ++ +   +
Sbjct: 477 VSILFSALLALILTPAL 493



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 786  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGDAMREMEQLIAKLPK 845

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 846  GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWSIPLS--VMLVV 897

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 898  PLGIFGAIIAIMTKGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLVEA 954

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 955  TVAAAKLRLRPILMTSLAFTCGVVPLVIASGAS-SETQHALGTGVFGGMISATILA 1009


>gi|24376164|ref|NP_720208.1| AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
 gi|24351208|gb|AAN57651.1|AE015901_2 AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
          Length = 1044

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/574 (12%), Positives = 154/574 (26%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++PS  P               +V+  + 
Sbjct: 8   RPIFAWVIALIIMLAGVLSI-----RTLPVSQYPSIAPPT-------------VVISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       I   S      +ITL+F      +    +V  
Sbjct: 50  PGASAKIVEDSVTQVIEQRMKGIDHLRYIASTSDSFGNAEITLTFNAEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQG  + L  + +   +         +++             + +  +     D +   
Sbjct: 110 KLQGAMTLLPQEVQAQGVDVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANVQDPMSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L Q   T+ ++       N        G        
Sbjct: 170 PGVGEIQLFGAQ-YAMRIWLDPLKLTQYNLTSLEVISAIRAQNAQVSAGQLGGTPSIQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +      F      +       
Sbjct: 229 ELNATVSAQSRL-------------QTPEEFRKIILKSDTSGANVFLGDVARVELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T E        LR         +           
Sbjct: 276 AVVSFYNGKPATGLAIKLATGANALDTAEAVRDKVEELRPFFPQGLDVVYPYDTTPFVEK 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSATGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      R F+IT+  ++ +S+  A+ +  A+         +K +          
Sbjct: 456 MAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPVQKGHGHIETG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F R                  ++  +
Sbjct: 511 FFGWFNRNFDRLTNRYESSVAGIVKRGFRVMMIY 544



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 80/240 (33%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       +   +           L        +++     +    +++ 
Sbjct: 255 TSGANVFLGDVARVELGSESYAVVSFYNGKPATGLAIKLATGANALDTAEAVRDKVEELR 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  ++ + + + + +++  + +   L     + +
Sbjct: 315 PFFPQGLDVVYPYDTTPFVEKSIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    +  G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPLEATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F+I +   + ++   ++ +   +
Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPAL 492



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 80/271 (29%), Gaps = 14/271 (5%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +       V  S   +         +   N     N           
Sbjct: 774  QYRMQPEDLNTWYVRNNKGDMVPFSAFATGSWEYGSPRLERFNGLPAVNIQGATAPGFST 833

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A T + ++VK+            + E              +  + I  +  L+   + 
Sbjct: 834  GAAMTIMEDLVKQLPPGFGIEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 888

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 889  ESWSVPFAVILVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 948

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 949  ---YEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYD---WRAKNAR 832
            ++ +    IF      + +      R + A+
Sbjct: 1006 MMSSTFLGIFFVPLFFVIVERIFSKRERKAK 1036


>gi|192358947|ref|YP_001981961.1| AcrB/AcrD/AcrF family protein [Cellvibrio japonicus Ueda107]
 gi|190685112|gb|ACE82790.1| AcrB/AcrD/AcrF family protein [Cellvibrio japonicus Ueda107]
          Length = 1048

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/554 (12%), Positives = 147/554 (26%), Gaps = 33/554 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++PS  P                      
Sbjct: 8   RPIFAWVIALVIMLAGVLSI-----SALPIAQYPSIAPPAI---------SISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    L        +        + L+F      +    +V   L  
Sbjct: 54  ARTLEDSVTQVIEQKMKGLDGLMYMSSTSESSGTVTLMLTFTADTNPDIAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++            I+    +     D I   +   
Sbjct: 114 ATPLLPQEVQRQGVTVAKSARNFLMVLGFVSADGSMSNIDIGDYVAANVQDIISRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP+RL+    T A +S      N        G     +      
Sbjct: 174 EVQLFGTQ-YAMRIWLDPARLQNYKLTPADISNAITAQNAQVSAGQLGGMPAIEGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +  +                   I                 I           
Sbjct: 233 TVTAQSRLQTVEQFRH-------------IILRTNPDGSNVRLGDVAKIELGGDTYDVVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +   T E      A L+         +V          S   
Sbjct: 280 RFNGKPAAGLGVKLAAGANALDTAEGVKAKIAELQPFFPEGLQAVVPYDTTPFVKISIQK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VVETLIEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +           +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEKLSPKEATRKSMREITGALIGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++ +S+  A+S+  A+   +++           L   F     
Sbjct: 460 GGSTGVIYRQFSITLVSAMALSVLVALSLTPALCATLLKAGDHNHDAPKSLIGRFFAGFN 519

Query: 538 IAIQFMRARFWGVG 551
              + +        
Sbjct: 520 RNFERVNKGTRSFV 533



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V          D+  +        L        +++     ++    ++    
Sbjct: 258 SNVRLGDVAKIELGGDTYDVVARFNGKPAAGLGVKLAAGANALDTAEGVKAKIAELQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I+K +  +I + + + + +++  + +   L     + + + 
Sbjct: 318 PEGLQAVVPYDTTPFVKISIQKVVETLIEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFGVLAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMTEEKLSPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  +  ++      +PMA +GGS       F+I +   + ++   ++ +   +   
Sbjct: 436 REITGALIGIALVLSAVFVPMAFFGGSTGVIYRQFSITLVSAMALSVLVALSLTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 84/269 (31%), Gaps = 18/269 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +       V  S   S+        +   N                   
Sbjct: 781  RMNPEDLNQWYVRNSQGDMVPFSAFASSHWGYGSPRLERYNGLASMEIQGAAAPGYSTGD 840

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   + E++ K    I    T  + +         L+        +S + + + +   ++
Sbjct: 841  AMLAMEELIAKLPPGIGFEWTGMSYQERMTGDQAPLLY------ALSLLVVFLCLAALYE 894

Query: 690  WYFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +F   A+  ++ L +   +    L  +  ++     +LT +G +  + +++ +  +   
Sbjct: 895  SWFVPAAVMLVVPLGVLGAVIAATLVKLPNDIYFQVGLLTTMGLASKNAILIVEFAK--- 951

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                  +       +++   L   + TSMA    VLP+A+  G+        +  G+V  
Sbjct: 952  GRMEQGMDLVAASIEAVRLRLRPIIMTSMAFVCGVLPLALATGAG-SGAQNALGIGVVGG 1010

Query: 809  ASSS-----IFIAAPILLFIYDWRAKNAR 832
              +S     +F+  P+   +        +
Sbjct: 1011 MLTSAGLAILFV--PLFFVLIRRLFPVKK 1037


>gi|294140691|ref|YP_003556669.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
 gi|293327160|dbj|BAJ01891.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
          Length = 1031

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/637 (11%), Positives = 179/637 (28%), Gaps = 43/637 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISILLIAFGLVA-----FDKLPLREYPNIDPPVV---------SIQTTYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S R  ++ +TL F   R  E  A+ +   + G
Sbjct: 55  SASVVESRITQLVEDRISGVEGIRHISSSSRDGRSTVTLEFDVDRDIEAAANDIRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  + +   +      +  I+      D      ++ +    R   D++ + +   
Sbjct: 115 LLNNLPEEAEPPEVQKANGGDEVIMWLNLVSD--QMTTLQLTDYARRYLTDRLSVIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D   L     T + +       N          +    +   + 
Sbjct: 173 NIRIGGGKVYAMRIWIDRQALAARNLTVSDIEKVLRSENVELPAGSVESKERHFTVRVER 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +                       +                 +           
Sbjct: 233 SFRTVED-------------------FANLVLSQGDDGYLIRLGDVARVEIGSEEDRIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +          L   +               +      S   
Sbjct: 274 RGNREAMIGLGISKQSTANTLDVSRATNALVDEINPTLPAGMEIKRSYDSSVFIEASVKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFIAMFLVIVVIYLFLGSVRAMLIPALTVPVSLMATFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVVLENIHRRIEEGDSPLKAAYLGSREVAFAVVATTLVLVAVFMPITFLE 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+TM  +++ S   A+++   M   +          ++ +D         
Sbjct: 454 GDIGKLFKEFAVTMSAAVIFSSIVALTLSPMMCSKLLKPAGNDPWLVRKVDAGMNYVTDK 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +             I +                   + +G + L V   +      
Sbjct: 514 YRKLLTKAMCHPVIVTSLIVVALGSSMALFKLVPQEFAPREDRGSMFLIVNGPQGASFEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           + S ++ ++   +   +    K  L+R     G S  
Sbjct: 574 IESYMDEIEARLMPLVDNGDIKRLLIRAPRSFGSSAD 610



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 72/193 (37%), Gaps = 9/193 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A   +++ +   +   + +    ++ +      +E+ +   + + +  + + +++   
Sbjct: 297 SRATNALVDEINPTLPAGMEIKRSYDSSVFIEASVKEVYQTLFIAMFLVIVVIYLFLG-- 354

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    T+ + +  T       G   NL  + A++  IG  V+D +VV + +   
Sbjct: 355 -SVRAMLIPALTVPVSLMATFIVLYALGYTINLLTLLAMILAIGMVVDDAIVVLENIH-- 411

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
            +      S          E     V T++      +P+    G +      FA+ M+  
Sbjct: 412 -RRIEEGDSPLKAAYLGSREVAFAVVATTLVLVAVFMPITFLEGDIGKLFKEFAVTMSAA 470

Query: 805 IVVAASSSIFIAA 817
           ++ ++  ++ ++ 
Sbjct: 471 VIFSSIVALTLSP 483



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 62/158 (39%), Gaps = 8/158 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   +  + T+ L     L    L     N+ +   ++ L+G 
Sbjct: 860  ALALGIVFLVLAAQFESFIHPMVIMLTVPLATLGALIGLYLTDQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++ ++ L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDRGLEFEQAIIQAASQRLRPILMTGITTAAGAIPLVMAQGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G        + +  GI+VA   ++ +  P+   ++   
Sbjct: 977  GAETRFVIGVVVLSGILVATLFTLLVI-PVAYSLFARN 1013


>gi|299068424|emb|CBJ39648.1| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum CMR15]
          Length = 1049

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/664 (10%), Positives = 177/664 (26%), Gaps = 49/664 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G +        Q  + ++P+  P               +++    
Sbjct: 8   RPVFAWVLALFIIVAGAISV-----TQLPIAQYPTIAPP-------------SIIITATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN--KITLSFADSRFKENIADKVT 116
                  L       +   +             +       IT++F            V 
Sbjct: 50  PGASAKTLDDAVTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V ++L     +  +     +   ++ +           +     I R  ++++  
Sbjct: 110 NRLKRVEARLPSSVTQQGVQVDKTRSNFLLFATLISKDGKMDPVALGDYISRNVLNEVKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q +        +    DP++L     T   +       N        G      S
Sbjct: 170 VPGVGQAVLFGT-ERAMRVWIDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +   V + G             T +    +   +    +        +      
Sbjct: 229 QP----IAATVVVEGQ---------MTTTEQFGNIVLVSKPDGSQVRIKDVARLELGGQT 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +    I+          +   T +        L           +         
Sbjct: 276 YATSARINGQPISAIGVQLSPTGNALGTAKAVKAKLDELSKYFPAGVEYKIPYDTSKFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   ++ L+    + ++++   A ++ LG ++ + +
Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLVFLQNIRYTLIPSIVVPISLLGAFATMNALGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +      +      +    I    +  +   +
Sbjct: 396 MFGLVLAIGILVDDAIVVVENVERIMSAEGLPPREATRKAMGQITGAIIGITLVLMAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDI 525
            + FF G      R F+++M  SI  S   A+++  A+   +         ++K      
Sbjct: 456 PMAFFSGSVGAIYRQFSLSMVASIFFSALMALTLTPALCSTLLKPIEKGSHHEKKGFFGW 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        +      +     + I  ++    +L    L             +  
Sbjct: 516 FNRMFSTTTNRYQSFVERMLKKTFRYMVIYGALIGAVVLLFMRLPSSFLPNEDQGYIITN 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +    +     LE ++  +  +Q+    +N +    +    +     ++    K  +  
Sbjct: 576 IQLPPAASANRTLEVIKHVENYYQHEKAVENIVAVQGFSFSGNGPNAALVFTTLKDWSAR 635

Query: 646 VPLS 649
               
Sbjct: 636 GADQ 639



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 87/250 (34%), Gaps = 6/250 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            F   + +       V +  V       Q    S +      + +       G+++   +
Sbjct: 246 QFGNIVLVSKPDGSQVRIKDVARLELGGQTYATSARINGQPISAIGVQLSPTGNALGTAK 305

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
            ++    ++++  P            K  +  I + +  +  +   + + + +  +   +
Sbjct: 306 AVKAKLDELSKYFPAGVEYKIPYDTSKFVQISIEEVVKTLFEAMALVFLVMLVFLQNIRY 365

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +          G   N+  +  ++  IG  V+D +VV + +     +  
Sbjct: 366 TLIPSIVVPISLLGAFATMNALGFSINVLTMFGLVLAIGILVDDAIVVVENV--ERIMSA 423

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +  R+   K++ +  G  +  ++      +PMA + GSV      F++ M   I  +A
Sbjct: 424 EGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVASIFFSA 483

Query: 810 SSSIFIAAPI 819
             ++ +   +
Sbjct: 484 LMALTLTPAL 493



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 77/240 (32%), Gaps = 9/240 (3%)

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
              +    + +         V  S            Q         VR+        +   
Sbjct: 777  RMQPEDIMNLYVRNTQGSMVPMSAFAKGHWMVGPVQLVRYNGYPSVRISGDAATGASTGA 836

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
             ++ ++    ++      + T     + S       +  +  S +A+ + +   ++ W  
Sbjct: 837  AMDEMEHLAAKLPAGIGFEWTGQSLQEKSSGSQAPALYAL--SLLAVFLVLAALYESWSI 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I  + L +   L    L  +  ++     ++ ++G S  + +++ +  +    L  
Sbjct: 895  PAAVILVVPLGVLGALLGVTLRFMPDDVYFKVGLIAVVGLSAKNAILIIEFAKD---LQA 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA 809
                  +   ++++      + TS A  + VLP+A+  G+      +    +  G++ A 
Sbjct: 952  QGKGLIEATLEAVHLRFRPIIMTSFAFILGVLPLAIATGASSASQRAIGTGVMGGMITAT 1011


>gi|153832899|ref|ZP_01985566.1| acriflavin resistance plasma membrane protein [Vibrio harveyi HY01]
 gi|148870822|gb|EDL69721.1| acriflavin resistance plasma membrane protein [Vibrio harveyi HY01]
          Length = 1050

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/692 (11%), Positives = 181/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPKISPP-------------SVSVTAF 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDKFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT  +       N        G     + 
Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPEKMANLNLTTTDVYSALAEQNVQVAAGRIGAAPYNNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFEDVVLRANPDGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGNGKFRGQDASIVALSLQSDANALESGQAVMDLLERLSTNFPEGMAYETSYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +  L   
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATLLAMKEVTGPIITSTLVLLAVF 456

Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +    L    G   R FA+T+ +S++IS   A+++  A+   +            ++ + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTANWFQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  +     T       + KG + + V  
Sbjct: 517 GLERVTARYGQIAGFLVKKSMLLIAFFFVAVAAVTFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     +   +    T  
Sbjct: 577 PDSASLSRTEKVTNELMKMVEQEPGVDGVTVANGYSFMTGAAASNGASLFIKLHDWDTRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                     I      R  +      V+ + 
Sbjct: 637 SLDGEHAANAIANRINGRAAME-LPQAVVFAM 667



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 86/235 (36%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D + +    + + +        +++   + +  + ++++   P 
Sbjct: 262 VYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESGQAVMDLLERLSTNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GMAYETSYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         +IS R     ++ E
Sbjct: 382 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLLAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      LP+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/447 (11%), Positives = 117/447 (26%), Gaps = 26/447 (5%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI--F 464
            L+      P + G+ +  G +  +    +       + +     +   G   A +     
Sbjct: 592  LMKMVEQEPGVDGVTVANGYSFMTGAAASNGASLFIKLHDWDTRNSLDGEHAANAIANRI 651

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
            +      +   V+F  G  AV G     G   ++      S   +   M   I    +  
Sbjct: 652  NGRAAMELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLSMVMGEMIQAANQAP 711

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             I     +    +P                            L +  +N    F    ++
Sbjct: 712  EIAYTFSTFRANVPHYYVDIDREKAQQLGIPLSSIFQTLQGNLGSLYVNDFTMFGKNFRV 771

Query: 582  GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + A+              V  S       S  +        D    + +          
Sbjct: 772  TMQADSEHRSSMEDLERFHVRSSSGDMVPLSTLVSYEQVFEPDVAWRYNMYRSAIIQGQP 831

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
            A           +  +      Q        ++ + +  G   +   +   + IY   + 
Sbjct: 832  APGYSSGDAIAAMERVAAEVLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   L  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892  QYESWSIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
            +  +     +       +           TS +  + + P+    G+      S  I + 
Sbjct: 952  QEREE--KDVDIDSAAVQGGKLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLI 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++    +  F+       +   R K
Sbjct: 1010 GGLLCVLLAGTFLIPGFYALVQRKREK 1036


>gi|171321878|ref|ZP_02910774.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MEX-5]
 gi|171092826|gb|EDT38091.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MEX-5]
          Length = 1066

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPISQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPVLPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANFVASHVKDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+RL     T   +S      N    G   G    +   
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTRLTNYGLTPVDVSTAISAQNVQIAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        I       
Sbjct: 229 MLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVSKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAGFGIQLATNANALATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++SL+G ++   S+
Sbjct: 336 SIEDVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSLVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFDNSREKYHVGVHHVIKRSGRWLIIY 544



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +                 +++A  + +     ++    
Sbjct: 258 SQVRLKDVSKIELGGENYNFDTKYNGQPTAGFGIQLATNANALATAKAVRAKIDELAPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I   +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEDVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +L G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMSLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 80/219 (36%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K   +    +         +   +    
Sbjct: 816  ERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGSQAPVL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    + G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVVGALLAATMRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQTTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/522 (11%), Positives = 137/522 (26%), Gaps = 38/522 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLKDEKDIVESAFTVNGFSFAGRGQNSGLVFVRLKDYAQRQHANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  L++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLQGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDLNIWYVRNGSGGMVPFGAFASGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      V    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L V+  L   ++ G    +  
Sbjct: 871  ----QAPVLYAISILVVFLCLAALYESWSIPFSVIMVVPLGVVGALLAATMRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQTTEKMGPIEAALEAARLRLRPILMTSLAFILGVM 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             L      G  +       +   ++ + F AI ++    + I
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028


>gi|296104981|ref|YP_003615127.1| Cation/multidrug efflux pump [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295059440|gb|ADF64178.1| Cation/multidrug efflux pump [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 1037

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/684 (10%), Positives = 182/684 (26%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G L  L     +  + ++P+  P                     
Sbjct: 7   QRPVFAWVLAIILMIAGGLAIL-----KLPVAQYPTIAPPAV---------AITATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     N  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGNVTITLTFESGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D       + S  +     D I  +   
Sbjct: 113 LAMPLLPQEVQQQGIGVEKSSSSFLLVAGFVSDNKSLSQDDISDYVASNVKDAISRTTGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + + +   T   +       N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDSNAMNKYQLTPLDIINQLKTQNDQIAAGQLGGTPSVPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KSPEEFGRVTLKVNQDGSMVHLKDVARIELGGENYNMV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                +   T        A L+         +           S  
Sbjct: 279 TKINGQAATGLGIKLATGANALDTASAIKSKLAQLQQFFPQGLKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +             +      +    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMVEHKLPPKEATQKSMEQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526
           FGG      R F++T+  ++ +S+  A+ +  A+   +           +       +  
Sbjct: 459 FGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCATLLKPVSGDHHEKKGGFFGWFNAL 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    + ++    +   + V   I+    ++  L         + +G     V   
Sbjct: 519 FDRSVEHYSNSVSGILRKTGRYLVVYIIIVGGMAVLFLRLPTSFLPEEDQGVFMTMVQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +  +  L+ +Q   +  +  + E  F V      G           +K       
Sbjct: 579 AGATQTRTQQVLDQVQNYYLKNEKANVESVFTVNGFSFSGQGQNAGIAFISLKPWEARPG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             ++++       K   ++    +
Sbjct: 639 AENSVEAIVGRATKAFSQIKDGLV 662



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 84/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  ++  +        L        +++     ++    ++ +  
Sbjct: 258 SMVHLKDVARIELGGENYNMVTKINGQAATGLGIKLATGANALDTASAIKSKLAQLQQFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + I + + +++  +     L     + + + 
Sbjct: 318 PQGLKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEHKLPPKEATQKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  +M      +PMA +GGS       F++ +   + ++   ++ +   +   
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 70/194 (36%), Gaps = 7/194 (3%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY 683
             G+S       E +    +    L +    +  G      L       +  IS I + + 
Sbjct: 827  IGESAPGKSTGEAMALMESLAAKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLC 886

Query: 684  IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +   ++ W      +  + L +   L   AL G+  ++     +LT IG S  + +++ +
Sbjct: 887  LAALYESWSIPFSVMLVVPLGVIGALVAAALRGLNNDVYFQVGLLTTIGLSAKNAILIVE 946

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +  M+         +   ++    L   + TS+A  + V+P+ +    G     +   
Sbjct: 947  FAKDLMEKEGKG--IIEATLEASRMRLRPILMTSLAFILGVMPLVISHGAGSGAQNAVGT 1004

Query: 800  PMAFGIVVAASSSI 813
             +  G++ A   +I
Sbjct: 1005 GVMGGMLSATLLAI 1018


>gi|296122542|ref|YP_003630320.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces limnophilus DSM 3776]
 gi|296014882|gb|ADG68121.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces limnophilus DSM 3776]
          Length = 1122

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/565 (11%), Positives = 153/565 (27%), Gaps = 31/565 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +           + ++P   P                +     
Sbjct: 9   RPIFASVLSIVITLAGGIAVF-----TLPITQYPEITPPTVE---------VSAIYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++             +  +T++FA           V   +  
Sbjct: 55  AQVVADTVASPIEQQVNGVEGMLYMTSQCANDGSYTLTVTFAPGSNLNIAQVLVQNRVDL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L     +  ++   +    +++            +  S     Q  D++       
Sbjct: 115 AEPVLPDLVNRRGILVKKKSPSVLMIVNLYSPDNSRDNLYLSNYATIQLRDELSRLPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 R    +    DP +L  L  +++ +       N        G          Q+
Sbjct: 175 DITYLGRRDYSMRVWLDPDKLASLGLSSSDVVHAIEQQNVQVAAGQIGQPPAPSDQVFQF 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     ++                +    I   +   R                     
Sbjct: 235 TMTTVGRLADDQ-------------QFGEIIVKTDADGRIIRLRDVARTELGALAYDQVC 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     E+       L+    P     +          S S 
Sbjct: 282 TLDGKPSVALSVYQLPGSNALEVAESVRKKMEQLKTRFKPGVDYSIVYDTTPFIEESVSE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV IV+ + +   +  ++   ++ + ++ T A ++  G +L   ++ G+V
Sbjct: 342 VFTALRDAVILVAIVVLIFLQGWRAAVIPLVAVPVAIVGTFAAMAAFGFSLNTLTLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E I        S   +        A   I    + + +    +F  
Sbjct: 402 LAIGIVVDDAIVVVEAIEHHIEHGLSPREAAIRAMDEVAGPVIAVGLVLSAVFLPCVFIT 461

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G   + FA+T+ +S +IS F ++++  A+ + +++ +              ++   +
Sbjct: 462 GIVGQFFQQFALTIAISTVISAFNSLTLSPALAVLLLKPRAHGHAPEPLPRVGIVLVAVL 521

Query: 539 AIQFMRARFWGVGISILFSICSICL 563
               +  R                +
Sbjct: 522 GAYLLGPRLLADYQFAEMPYFKYIM 546



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +  ++    L G + N+      + L+G +  + +++ +  R   
Sbjct: 951  SWALPLAVILVVPMCLLCSILGVLLTGQDVNIFTQIGFVVLVGLACKNAILIVEFAR--- 1007

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +  +  + ++    L   + TS+A  + V+P+ +    G  +  +    + +G+
Sbjct: 1008 ARRAAGVPRQQAVLEACQLRLRPIIMTSLAFILGVVPLMIGEGAGAEMRQALGTAVFWGM 1067

Query: 806  VVAASSSIFIAA---PILLFIYDWRAKNA 831
            +      IF+      ++ ++ DWR   A
Sbjct: 1068 LGVTLFGIFLTPIFYEVIQWVVDWRKTKA 1096



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 93/282 (32%), Gaps = 18/282 (6%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
               +       +    D +   ++ V  +    +  +R    +        Q    +  
Sbjct: 227 PSDQVFQFTMTTVGRLADDQQFGEIIVKTDADGRIIRLRDVARTELGALAYDQVCTLDGK 286

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGV 673
             V L            V E V+KK+ ++           +    +  +          +
Sbjct: 287 PSVALSVYQLPGSNALEVAESVRKKMEQLKTRFKPGVDYSIVYDTTPFIEESVSEVFTAL 346

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + I + I + I  + W  A+  +  + + I  T    A FG   N   +  ++  IG 
Sbjct: 347 RDAVILVAIVVLIFLQGWRAAVIPLVAVPVAIVGTFAAMAAFGFSLNTLTLFGLVLAIGI 406

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWG- 790
            V+D +VV + +          +S R+   ++++E  G  +   +      LP + + G 
Sbjct: 407 VVDDAIVVVEAI---EHHIEHGLSPREAAIRAMDEVAGPVIAVGLVLSAVFLPCVFITGI 463

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIF----IAAPILLFIYDWR 827
            G     FA+     I ++   S F    ++  + + +   R
Sbjct: 464 VGQFFQQFALT----IAISTVISAFNSLTLSPALAVLLLKPR 501


>gi|320538812|ref|ZP_08038488.1| putative multidrug efflux system protein [Serratia symbiotica str.
           Tucson]
 gi|320030972|gb|EFW12975.1| putative multidrug efflux system protein [Serratia symbiotica str.
           Tucson]
          Length = 871

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 62/550 (11%), Positives = 157/550 (28%), Gaps = 41/550 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGVLAIM-----KLPIAQYPTIAPPA-------------VNISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQIIEQNMNGIDNLMYMSSTSDSSGSVTITLTFDSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L         ++++    D       + +  +     D +  S
Sbjct: 110 KLSLATPLLPQKVQQRGLKVEKSSSSFLMVAGFVSDDPNMTQNDIADYVASNIKDSLSRS 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     TT+ ++      NN       G        
Sbjct: 170 SGVGEVQLFGAQ-YAMRIWLDPNKLNNFQLTTSDVTSAITEQNNQIAAGQLGDMPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +    +   +        I +     
Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGKILLKVNIDGSQVRLTDVAYIERGAEGY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                    +            +   T +      A ++         +           
Sbjct: 276 TVTARYNGMLAAGLGIKLATGANALNTAKGVKDTLAKMKPFFPQGMKVVYPYDTSPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++   A+LS+ G ++   ++
Sbjct: 336 SINEVVKTLFEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGAFAILSVFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   ++         +      + 
Sbjct: 456 MAFFGGSTGAIYRQFSITIVAAMGLSVLVALILTPALCATLLTPIPKGDHGVKTGFFGWF 515

Query: 534 IPDCIAIQFM 543
                     
Sbjct: 516 NNMFEKSTNH 525



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 72/194 (37%), Gaps = 6/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
              + ++    K+    P               +  I + +  +  +   + + +++  +
Sbjct: 301 NTAKGVKDTLAKMKPFFPQGMKVVYPYDTSPFVKISINEVVKTLFEAIALVFLVMYLFLQ 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + +       ++FG   N   +  ++  IG  V+D +VV + +    
Sbjct: 361 NFRATLIPTIAVPVVLLGAFAILSVFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +  ++   KS+ +  G  V  ++      +PMA +GGS       F+I +   +
Sbjct: 419 VMSEEGLPPKEATRKSMGQIQGALVGIALVLSAVFVPMAFFGGSTGAIYRQFSITIVAAM 478

Query: 806 VVAASSSIFIAAPI 819
            ++   ++ +   +
Sbjct: 479 GLSVLVALILTPAL 492


>gi|209967138|ref|YP_002300053.1| acriflavine resistance protein B [Rhodospirillum centenum SW]
 gi|209960604|gb|ACJ01241.1| acriflavine resistance protein B [Rhodospirillum centenum SW]
          Length = 1047

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 143/521 (27%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  ++++P+  P               + +    
Sbjct: 8   RPIFAWVIAIVIMLAGALAIF-----RLPIEQYPTIAPPA-------------VTITASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117
                  L+      +   L       +      ++    ITL+F      +    +V  
Sbjct: 50  PGASASTLEDTVTQVIEQKLTGIDYLRYFSSTSDSQGNVSITLTFEPEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  + ++  L  T      +++             E S  +     D +   
Sbjct: 110 KLQLAIPQLPQEVQQRGLTVTKSARDFLMVVGFVSADGSMTEGEISDYVASTIQDPMSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP R+     T   +       N        G        
Sbjct: 170 PGVGTVIVFGPQ-NAMRIWLDPERMNSYGMTVTDVINAVEAENAQISAGQLGGAPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +                    +    +        +        +       
Sbjct: 229 QLNATIVAQTR-------------MRTADEFAGILLRVNADGSQVRLSDVARVELGQDSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T E      A L+    P    I           
Sbjct: 276 EIKGRYNGNPASGLAIRLATGANALDTAEAVRARVADLQPFFPPGLEVIYPLDTTPFIKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++ T  +LS  G T+ + ++
Sbjct: 336 SIEGVVHTLLEAIALVFLVMFVFLQNFRATLIPTIAVPVVLLGTFGILSAFGFTINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEKLPPREATRKSMEQITGALIGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + FFGG      R F++T+  ++ +S+  A+ +  A+   I
Sbjct: 456 MAFFGGSAGVIYRQFSLTIVSAMGLSVLVALILTPALCATI 496



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V          +I  +      + L        +++     +      +    
Sbjct: 258 SQVRLSDVARVELGQDSYEIKGRYNGNPASGLAIRLATGANALDTAEAVRARVADLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P        +      +  I   +  ++ +   + + +++  + +   L     + + + 
Sbjct: 318 PPGLEVIYPLDTTPFIKLSIEGVVHTLLEAIALVFLVMFVFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  + FG   N+  + A++  IG  V+D +VV + +     +    +  R+   KS+
Sbjct: 378 GTFGILSAFGFTINVLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEKLPPREATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  +  ++      +PMA +GG   VI   F++ +   + ++   ++ +   +
Sbjct: 436 EQITGALIGIALVLSAVFVPMAFFGGSAGVIYRQFSLTIVSAMGLSVLVALILTPAL 492



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 84/242 (34%), Gaps = 10/242 (4%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S       +   G  ++ +   E+   V      G +       E +      +  L 
Sbjct: 791  NASGQMVPFSAFATGHWTYGSPQLERYNGVPSVNIQGSAAPGISSGEAMAAMEELVGRLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                 E  G      L       +  +S + + + +   ++  +++ A   L++ +    
Sbjct: 851  PGIGLEWTGLSYEERLTGAQAPALYALSTLVIFLCLAALYE-SWSVPAAVMLVVPLGVLG 909

Query: 709  GFFALFG--IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
               A  G  +  ++     +LT IG +  + +++ +  +    LY   +   +   ++  
Sbjct: 910  AVVAALGRGLPSDVYFQVGLLTTIGLASKNAILIVEFAK---SLYEQGMGLIEATIEAAR 966

Query: 767  ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + TS+A  + VLP+A+    G     +    +  G++ A   +I+      + +
Sbjct: 967  LRLRPILMTSLAFILGVLPLAIAKGAGAESQNAIGTGVMGGMIAATVLAIYFVPVFFVAV 1026

Query: 824  YD 825
              
Sbjct: 1027 MK 1028


>gi|153832959|ref|ZP_01985626.1| protein-export membrane protein SecD [Vibrio harveyi HY01]
 gi|148870882|gb|EDL69781.1| protein-export membrane protein SecD [Vibrio harveyi HY01]
          Length = 612

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 150/513 (29%), Positives = 269/513 (52%), Gaps = 27/513 (5%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            F   S+   + + M  + I LGLDLRGG   +L VD +           DE+++ L++E
Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALVDEIKANLREE 172

Query: 85  GIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
            I    +R    N I ++  +    +  +  +                    +T +++  
Sbjct: 173 RIRGVQVRAEAHNHIAVNSENEAGLKAASQFIRQNY------------PGWTMTGSDRGF 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  S+ NI +  +  ++Q+++I+R RI+++GI+E+ +QR G   I I+LPG QDP++ +
Sbjct: 221 ELQPSEQNIQEFQTTTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++V    + +        L+D+DG   ++  +  ++G H+  A A  D 
Sbjct: 281 NVIGATASLAFYEVKD--AGQARSSQDLVLKDNDGRTVILTKRPVLTGEHIVNARAGVDK 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+       +      + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTDERGMTERSERVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +++ ERI+++ R+ +S   ++D+GF  A++TI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL ++ SMFT +   RAM+  I      + + 
Sbjct: 579 LGLGLMTSMFTGVFASRAMINLIWGRDGRRDVR 611



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    TI     +G  +  E I+ G   + +     L ++ + +
Sbjct: 410 SMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L  ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SF   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 MRE---GRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGFALTLGLGLMT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+    + 
Sbjct: 586 SMFTGVFASRAMINLIWGRDGRR 608


>gi|88703679|ref|ZP_01101395.1| Protein-export membrane protein secF [Congregibacter litoralis
           KT71]
 gi|88702393|gb|EAQ99496.1| Protein-export membrane protein secF [Congregibacter litoralis
           KT71]
          Length = 304

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 94/292 (32%), Positives = 167/292 (57%), Gaps = 5/292 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R      S+L  + ++  L    LN+G+DF GG  + V      DL+ +RS
Sbjct: 1   MKIINFMGKRRLAAAFSVLLILTALGSLAVKQLNWGLDFTGGTLVEVHYADSADLNAIRS 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L           +F  +++ L+RL     D  +  +  EM++           ++  E 
Sbjct: 61  TLADGGYAGAIVVSFGTDRDVLIRLP----DGYSDAQGTEMLETLQGASGVNVELRRIEF 116

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +G + ++++   +++YI  RF++ FA+GA+  LI D+  TLGFF++ G+
Sbjct: 117 VGPQVGDELREQGGLAMLLALGLVMLYIAFRFQFKFAVGAVVALIHDVIITLGFFSIIGL 176

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EF+LT +AA+L +IGYS+ND +VV DR+R+N +    +    ++++ S++ETLGR++ TS
Sbjct: 177 EFDLTVLAALLAVIGYSLNDTIVVSDRIRENFRKLRKAEPL-EVVNISLSETLGRTLVTS 235

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   + +L +AV+GG +I  FAI +  G+++   SSI++A+ +LL +   + 
Sbjct: 236 LTTLLVLLSLAVFGGEMINGFAIALLVGVMIGTYSSIYVASNVLLSMGVSKE 287


>gi|307825959|ref|ZP_07656173.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacter tundripaludum SV96]
 gi|307732934|gb|EFO03797.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacter tundripaludum SV96]
          Length = 1066

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/675 (11%), Positives = 187/675 (27%), Gaps = 33/675 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G L  +        + ++P   P   +            V     
Sbjct: 11  RPIFASVLSIVIVLVGGLALI-----GLPIAQYPEIAPPTVV---------VSAVYPGAN 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   L    ++  + ++             +  +T++F      +     V   +  
Sbjct: 57  ATVVAETLATPIEQEVNGVEDMLYMSSQSTNSGSMALTITFKPGTDLDKAQVLVQNRVAL 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++           ++  S   + Q  D +       
Sbjct: 117 AEPKLPQEVSRQGISVKKRSPDLSLVVNLISPDKRYDSVYLSNYALLQIKDTLARLPGVG 176

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    +P ++     T   +       N      + G +  ++S   QY
Sbjct: 177 DIIVFGARDYSMRLWLNPEKVAARNLTATDVVNAMREQNIQVAAGVVGQQPTKESTDFQY 236

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +              +  +    +       +         I         G 
Sbjct: 237 TVSTLGRL-------------MEAEQFADIVIKKGADGQVTRLKDVARIELGAKDYNSGL 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +        L+          +    V     S   
Sbjct: 284 FLDGEPTVGLAIFQLPGSNALETKKAVVDTMEKLKTRFPEGLDYNMVYDTVVFVQQSIDA 343

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A+++ +G +L   S+ G+V
Sbjct: 344 VAKTLFEAILLVVLVVVLFLQNWRATVIPLLAVPVSLIGTFAVMAAMGLSLNTLSLFGLV 403

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        S   +           I  + +  +   V   F  
Sbjct: 404 LAIGIVVDDAIVVVENVERHIAMGLSARDATRKAMEEVVGPIIATALVLVAVFVPTAFIT 463

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
           G +    + FA+T+ +S +IS F ++++  A+   ++                 F     
Sbjct: 464 GVSGAFYKQFALTIAVSTVISAFNSLTLSPALCALLLDRAHGDKDGFTRLFDRLFGRFFT 523

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                F         +       +  +L  +    G++F    ++        D   +  
Sbjct: 524 VFNRFFDSFSEGYARLVGRLIRMTAVVLVLYVGLNGLNFLAFEKVPTGFIPQQDQGYLIL 583

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      ++      ++   + L+ +    +       ++       V     +  + 
Sbjct: 584 YAQLPDAASLARTEEMVQQATRIVLETKGVKHLNAYAGFSILSGSSQSNVATMFARLDDF 643

Query: 657 VGPKISRELIRKGIV 671
                  EL    ++
Sbjct: 644 DLRAGHPELHANAVI 658



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 60/165 (36%), Gaps = 7/165 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             ++   +S I + + +  +++ W      I  + + I  +L    L G++ N+      +
Sbjct: 883  ALLVFPLSVIFVFLALAAQYESWSLPFAVILIVPMCILSSLAGVWLSGMDNNIFTQIGFI 942

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G +  + +++ +  +   +     +S  D   ++    L   + TS A  + V P+ 
Sbjct: 943  VLVGLASKNAILIVEFAK---RRQEGGLSRFDAAVEAARIRLRPILMTSFAFIMGVFPLV 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +    G          +  G++      + +     +       +
Sbjct: 1000 IAQGAGAESRRLLGTAVFSGMLGVTVFGLLLTPVFYVVAQSLAQR 1044



 Score = 46.2 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 61/143 (42%), Gaps = 12/143 (8%)

Query: 690 WYFALGAITTLILDIT---KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           W   +  +  + + +      +      G+  N  ++  ++  IG  V+D +VV + +  
Sbjct: 366 WRATVIPLLAVPVSLIGTFAVMAAM---GLSLNTLSLFGLVLAIGIVVDDAIVVVENV-- 420

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
             +     +S RD   K++ E +G  + T++      +P A      G+    FA+ +A 
Sbjct: 421 -ERHIAMGLSARDATRKAMEEVVGPIIATALVLVAVFVPTAFITGVSGAFYKQFALTIAV 479

Query: 804 GIVVAASSSIFIAAPILLFIYDW 826
             V++A +S+ ++  +   + D 
Sbjct: 480 STVISAFNSLTLSPALCALLLDR 502


>gi|163857574|ref|YP_001631872.1| AcrB/AcrD/AcrF family protein [Bordetella petrii DSM 12804]
 gi|163261302|emb|CAP43604.1| AcrB/AcrD/AcrF family protein [Bordetella petrii]
          Length = 699

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/624 (12%), Positives = 172/624 (27%), Gaps = 51/624 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVALFILLAGLLAI-----PNMPVAQYPDVAPPA-------------ITITATY 49

Query: 63  DDFV-NGFLQMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                    +  +  +   L   +G+  +        Q++IT +FA     +     V  
Sbjct: 50  PGASAKEVAESVTSIIEDQLNGAKGLLYYESVSDSYGQSQITATFAPGTDPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V+++L V   +  +         +++   +           +  I R   + +   
Sbjct: 110 RVSNVSAQLPVAVNQQGIQYEQTSAGFLMIVTLSSTDGSLDQTALADYITRNVQNPVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP +L     + A+++      N        G     DS 
Sbjct: 170 PGVGQFQLFAAPR-AMRIWIDPDKLVGFNLSAAQVNAAISRQNVLISAGSMGAPPNPDSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +   V    ++S +                   +                 I       
Sbjct: 229 RSTATVIVNGQLSSVE-------------AFGNIVLRANTDGSSVRLRDVARIEVGADNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G  L                +   T E        L           +          
Sbjct: 276 QFGARLNGKPTAAFAIVLSPDANALATAEGVREQMESLSKYFPGNIKYDIPYDTAPYVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + + ++   A++  LG ++ + ++
Sbjct: 336 SIEQVVHTLGEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMLGAFAVMLALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    I    +  +   + 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERIMAAEGLPPKEATKKAMPQISGAIVGITLVLVTVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           L F  G      R F++ M +SI  S F A++   A+   I           +       
Sbjct: 456 LAFMSGSVGVIYRQFSVAMAVSIFFSAFLALTFTPALCATILKPIPKGHHVDKKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    +      + +A    +     +   +L  +     L         + +G +   +
Sbjct: 516 NRRFDATTHRYQNWVARILHKGGRMMLFFVVLVVLLGWLYLRLPSSFLPEEDQGYVVSNI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDIS 607
                   +     LE ++   +S
Sbjct: 576 ELPTGASANRTVDVLEQVESYFMS 599



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 82/235 (34%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +           +     +++A    +    + +++  P 
Sbjct: 260 VRLRDVARIEVGADNYQFGARLNGKPTAAFAIVLSPDANALATAEGVREQMESLSKYFPG 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +   +         +  I + +  +  + + + + +++  +   + L     + + +   
Sbjct: 320 NIKYDIPYDTAPYVKISIEQVVHTLGEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMLGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  + A++  IG  V+D +VV + +     +    +  ++   K++ +
Sbjct: 380 FAVMLALGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERIMAAEGLPPKEATKKAMPQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LP+A   GSV      F++ MA  I  +A  ++     +
Sbjct: 438 ISGAIVGITLVLVTVFLPLAFMSGSVGVIYRQFSVAMAVSIFFSAFLALTFTPAL 492


>gi|83721001|ref|YP_441237.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis E264]
 gi|257140097|ref|ZP_05588359.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis E264]
 gi|83654826|gb|ABC38889.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis E264]
          Length = 1066

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 158/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       IT++FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        R        IG      
Sbjct: 229 VLQATITEATLL-------------QTPEQFGDILLKVNQDGSRVRLKDVAQIGLGGETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        + A      +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNASRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     +++   
Sbjct: 258 SRVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 136/519 (26%), Gaps = 38/519 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    D + S     G       Q    + +   D   +++ + KV   +  
Sbjct: 590  LANISDYLLTQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSSQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  L++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLRGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVL 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             L      G  +       +   ++ + F AI ++    
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|23501199|ref|NP_697326.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis 1330]
 gi|81753197|sp|Q8G2M6|BEPE_BRUSU RecName: Full=Efflux pump membrane transporter BepE
 gi|23347078|gb|AAN29241.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis 1330]
          Length = 1051

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRFTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|302527847|ref|ZP_07280189.1| protein-export membrane protein SecF [Streptomyces sp. AA4]
 gi|302436742|gb|EFL08558.1| protein-export membrane protein SecF [Streptomyces sp. AA4]
          Length = 413

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 138/320 (43%), Gaps = 15/320 (4%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                      L     A+  + +R        L  +  I  +   G N GI+F+GG Q+
Sbjct: 28  KPGKKESFFHRLYVGTGAVDIVGSRKRWYIFFALLLLVCIGSMVFRGFNVGIEFEGGTQI 87

Query: 582 GVLAN----RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + A+    +     V++S   +L       Q         ++ + +   +    +V + 
Sbjct: 88  QLPAHGSHGQITQDQVIKSFNTALGEAPAETQTVGTGNAATIQTRSETLTADQVAKVKKQ 147

Query: 638 VKKKITEIVPL----STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + + +  I           +   V      E+ R+ ++ + +  +A++I++ I F    A
Sbjct: 148 IFEDLGPIGSNGKSSEQAISDSAVSASWGDEISRQALIALAVFLVAVVIFLAIYFDTRMA 207

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LY 751
             A+ +L+ DI  T G ++L G E     V  +LT++G+S+ D VVV+D++R+N +  L 
Sbjct: 208 FAALISLLHDIVVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVVVFDKVRENTRGLLG 267

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIV 806
            +  ++ +  + ++N+TL RS  T+  A + +L + +      G   +   A+    G +
Sbjct: 268 LSRRTYAEAANLALNQTLMRSFNTAFIALLPILGLLIVGYVLLGSGTLQDLALVQLTGTL 327

Query: 807 VAASSSIFIAAPILLFIYDW 826
           V   SS+ +A P+L+     
Sbjct: 328 VGVLSSVALATPLLVDFKMR 347


>gi|254703661|ref|ZP_05165489.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 3
           str. 686]
 gi|260567086|ref|ZP_05837556.1| acriflavin resistance protein [Brucella suis bv. 4 str. 40]
 gi|261754299|ref|ZP_05998008.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 3
           str. 686]
 gi|260156604|gb|EEW91684.1| acriflavin resistance protein [Brucella suis bv. 4 str. 40]
 gi|261744052|gb|EEY31978.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 3
           str. 686]
          Length = 1051

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 159/565 (28%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRFTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVSDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|157375564|ref|YP_001474164.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
 gi|157317938|gb|ABV37036.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
          Length = 1031

 Score =  192 bits (488), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 74/637 (11%), Positives = 186/637 (29%), Gaps = 43/637 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISILLIAFGLVS-----FDKLPLREYPNIDPPVV---------SIQTNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S R  ++ +TL F   R  E  A+ V   + G
Sbjct: 55  SASVVESRITQLVEDRISGVEGIRHINSSSRDGRSTVTLEFDVGRDIEAAANDVRDRVSG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  + +   +      +  I+      D      ++ +    R   D++ + +   
Sbjct: 115 LLNNLPEEAEPPEVRKANGGDEVIMWLNLVSD--QMTTLQLTDYARRYLTDRLSVIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 NIRIGGGKVYAMRVWIDRQALAARDLTVADIEKVLRSENVELPAGSVESKERHFTVRVER 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +                       +  +              +           
Sbjct: 233 SFRTAED-------------------FASLVLTEGDDGYLVTLGDVAKVEIGSEEERITF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +       A  L   +               +      S   
Sbjct: 274 RGNREAMIGLGISKQSTANTLDVARAANALVDKINPTLPAGMEIKRSYDSSVFIEASVKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +   +  L+   ++ +++  T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFIAMFLVIVVIYLFLGSVRAMLIPAVTVPVSLTATFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVVLENIHRRIEEGDSPLKAAYLGAREVAFAVVATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--KKMKSIDINPLSRFFLIPD 536
           G      + FA+ M  +++ S   A+++   M   +++        +        ++   
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSIVALTLSPMMCSKLLKPAGDDPWLVRKVDAGMNYVSAQ 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANRPVDLSV 593
             A+     R+  +  S++    +        +       + +G + L V   +      
Sbjct: 514 YQALVIKLMRYPLMVSSLVLIALACSAFLVKEVPQEFAPREDRGSMFLIVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           + S ++ ++   +        K  L+R     G S  
Sbjct: 574 IESYMDEIENRLMPLVESGEVKRLLIRAPRSFGRSAN 610



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 75/205 (36%), Gaps = 13/205 (6%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   +++ +   +   + +    ++ +      +E+ +   + + +  + + +++     
Sbjct: 299 AANALVDKINPTLPAGMEIKRSYDSSVFIEASVKEVYQTLFIAMFLVIVVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +T T       G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 356 VRAMLIPAVTVPVSLTATFIVLYALGYTINLLTLLAMILAIGMVVDDAIVVLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S          E     V T++      +P+    G    +   FA+ M+  ++
Sbjct: 413 RIEEGDSPLKAAYLGAREVAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVI 472

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
               SSI +A  +   +     K A
Sbjct: 473 ---FSSI-VALTLSPMMCSKLLKPA 493



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 63/158 (39%), Gaps = 8/158 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I++   + + +  +F+ +   +  + T+ L     L    L G   N+ +   ++ L+G 
Sbjct: 860  ILALGIVFLVLAAQFESFIHPMVIMLTVPLATLGALVGLWLTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++  + L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVEFERAIVQASAQRLRPILMTGITTAAGAVPLVLAQGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G        + +  GIV+A   ++ +  P+   ++   
Sbjct: 977  GAETRFVIGVVVLSGIVLATMFTLLVI-PVAYSLFARN 1013


>gi|238897329|ref|YP_002923006.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465084|gb|ACQ66858.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 617

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 169/543 (31%), Positives = 295/543 (54%), Gaps = 44/543 (8%)

Query: 12  SMICCIG-LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
            +I  +G   +   N  P + +  +  A+  + + LGLDLRGG H ++EVD D  ++   
Sbjct: 90  VLISILGDSYVVALNLAPATPI--WLRALGADPMKLGLDLRGGVHFLMEVDMDAILSKLQ 147

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTLFLQGVNSKL 126
               D LR  L+++ I    + +  +     I + F+D++ ++     ++          
Sbjct: 148 IQNMDSLRRELQEKNITYTQITKQNSTHGYGIEIDFSDAKSRDEAMSYLSSR-------- 199

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
               K  L+      ++  +++ + + +V  +A++Q+M I+R R++QIG++E  +QR   
Sbjct: 200 ---QKHMLINADRGNKLKALMTSDRLREVREYAVQQNMTILRNRVNQIGVAEPLVQRQ-G 255

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL-----RDSDGNQY 241
            RI+++LPG QD +R +++LG TA + FH V    + +    G         +D DG   
Sbjct: 256 DRIVVELPGIQDTARAKEILGATASLEFHLVNTKVTPEAAAIGRVPADTEIKKDRDGRLV 315

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  KV ++G H+         + ++P V+IS D +G+    + T+DNIGK +A +    
Sbjct: 316 ALYKKVIMTGDHITD-AFFGIDEYNRPQVNISLDSLGSAIMSDFTKDNIGKLMASLYVEY 374

Query: 302 V------------------LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343
                              +       +   G+ QI+G  T   A  LA +LRAG+L   
Sbjct: 375 KDSGNKDINGRPILVKQEEVINAANISSRFGGRFQITGIGTPSEARQLALLLRAGALIAP 434

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
           + IVEER +G  LG+ +I +G  A +AGL   +LFM+V Y K+G++A  ++ +N++L + 
Sbjct: 435 IQIVEERTIGPTLGAQNISQGLDACLAGLAASILFMVVYYRKFGMIASTALLVNLVLIVG 494

Query: 404 LLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
           ++SLL   TLT+P IAGIVL + +AVD+N+L+NERI+EE R  +S+  ++  G+  A+S+
Sbjct: 495 VMSLLPGVTLTMPGIAGIVLTLAVAVDANVLINERIKEELRNARSIQQAIHEGYKGAFSS 554

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           I D+NIT LI  ++L+  G G+++GFAIT  + +L SMFTAI   RA++  +   K+++ 
Sbjct: 555 IIDANITTLITAIILYAVGTGSIKGFAITTIIGVLTSMFTAILGTRAIVNMLYGAKRIEK 614

Query: 523 IDI 525
           + I
Sbjct: 615 LSI 617



 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 86/199 (43%), Gaps = 5/199 (2%)

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
                  +  +   ++    I     +GP +  + I +G+   +    A ++++ + ++ 
Sbjct: 417 SEARQLALLLRAGALIAPIQIVEERTIGPTLGAQNISQGLDACLAGLAASILFMVVYYR- 475

Query: 691 YFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            F + A T L++++   +G  +L  G+   +  +A ++  +  +V+  V++ +R+++ ++
Sbjct: 476 KFGMIASTALLVNLVLIVGVMSLLPGVTLTMPGIAGIVLTLAVAVDANVLINERIKEELR 535

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
               + S +  I +         +  ++   I+ + +   G   I  FAI    G++ + 
Sbjct: 536 ---NARSIQQAIHEGYKGAFSSIIDANITTLITAIILYAVGTGSIKGFAITTIIGVLTSM 592

Query: 810 SSSIFIAAPILLFIYDWRA 828
            ++I     I+  +Y  + 
Sbjct: 593 FTAILGTRAIVNMLYGAKR 611



 Score = 41.2 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 27/114 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  ++   +  +  L ALPNF  +    +                         V 
Sbjct: 4   RYPLWKYVMLIFVILLSFLYALPNFYGEDPAVQITG----------------------VR 41

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
            +      L    D     LKK  +   S+      I + F D    +  A  V
Sbjct: 42  GNAASELTLNQVHDI----LKKNHLTSQSIALKNGTILVRFKDP-NVQLAARDV 90


>gi|156976587|ref|YP_001447493.1| preprotein translocase subunit SecD [Vibrio harveyi ATCC BAA-1116]
 gi|156528181|gb|ABU73266.1| hypothetical protein VIBHAR_05361 [Vibrio harveyi ATCC BAA-1116]
          Length = 612

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 150/513 (29%), Positives = 269/513 (52%), Gaps = 27/513 (5%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            F   S+   + + M  + I LGLDLRGG   +L VD +           DE+++ L++E
Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALVDEIKANLREE 172

Query: 85  GIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
            I    +R    N I ++  +    +  +  +                    +T +++  
Sbjct: 173 RIRGVQVRAEAHNHIAVNSENEAGLKAASQFIRQNY------------PGWTMTGSDRGF 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  S+ NI +  +  ++Q+++I+R RI+++GI+E+ +QR G   I I+LPG QDP++ +
Sbjct: 221 ELQPSEQNIQEFQTTTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPAQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++V    + +        L+D+DG   ++  +  ++G H+  A A  D 
Sbjct: 281 NVIGATASLAFYEVKD--AGQARSSQDLVLKDNDGRTVILTKRPVLTGEHIVNARAGVDK 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+       +      + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTDERGMTERSERVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 GLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +++ ERI+++ R+ +S   ++D+GF  A++TI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VIIFERIKDKMREGRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL ++ SMFT +   RAM+  I      + + 
Sbjct: 579 LGLGLMTSMFTGVFASRAMINLIWGRDGRRDVR 611



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    TI     +G  +  E I+ G   + +     L ++ + +
Sbjct: 410 SMDEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L  ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 470 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SF   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 MRE---GRSFAQAIDLGFDSAFATILDANITTMITAVILYAIGNGPIQGFALTLGLGLMT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+    + 
Sbjct: 586 SMFTGVFASRAMINLIWGRDGRR 608


>gi|323528134|ref|YP_004230286.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Burkholderia sp. CCGE1001]
 gi|323385136|gb|ADX57226.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1001]
          Length = 1060

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/688 (10%), Positives = 187/688 (27%), Gaps = 48/688 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G             ++++P+  P               + +   
Sbjct: 7   KRPILAWVMAIVIMLVGAAAV-----TSLPVEQYPTIAPP-------------SVQITAT 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L        +   S    Q  ITL+F      +    +V 
Sbjct: 49  YPGASADTIAATVTQVIEQKLSGIDNVLYMSSTSSSAGQATITLTFNPGTNPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  +         +++   +      ++++    I  Q  D +  
Sbjct: 109 NKVSQATPTLPQTVQEQGVQVAKASTNFLMIVALSSPGGTWNSVDLGNIIASQIADPLSQ 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P +LR +  T + ++      N        G     DS
Sbjct: 169 LNGVGDVTLFGAQ-HAMRIWLNPVKLRSVGLTASDVTTAITNQNVELSTGQVGGAPATDS 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     ++                +    +                 +      
Sbjct: 228 QAINATIRSSSLLTTAD-------------QFANILLRVNSDGSGVLLKDVARVEVGGDS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +     +      A L+                    
Sbjct: 275 YETSSRLNGKPAAALAVKLATGANALEAAKAVRAKLAELQPQLPKDVAISYPYDTTPFVR 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+    + + ++ T  ++S++G ++ + S
Sbjct: 335 ISIEEVVKTLFEAVVLVFLVMYLFLQNVRATLIPTIVVPVALLGTFGVMSMIGFSINVLS 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF--SRAYSTIFDSNITALIAT 474
           +  +VL IGL VD  I+V E +     + +    +           + I  + +   +  
Sbjct: 395 MFAMVLAIGLLVDDAIVVVENVERIMSEEKLEPKAATRKALGQITGALIGVTTVLTAVFI 454

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FF G      R F+IT+  ++L+S+  A+++  A+   +++    +  +      +F
Sbjct: 455 PMAFFSGSTGAIYRQFSITIVSAMLLSVVLALTLTPALCATLLKRADAEHHEKRGFFGWF 514

Query: 533 LIP-------DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        ++  + AR     +        + LL+    +  +  +      V  
Sbjct: 515 NRWFGKGNAGYSSSLARVVARPTRYMLVYGVIAGIVALLYVTLPSSFLPDEDQGYFIVSI 574

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           + P       +      +     ++  G K  +    +          +  +  K  ++ 
Sbjct: 575 SAPAGTPASGTLKTVQAVEQYVLKDEPGVKQVIAINGFSFNGQGQNNAIAFVSLKDWSQR 634

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673
               + Q       +         I  +
Sbjct: 635 SARDSAQAIIARANQHFAGNRDARIFVL 662



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 87/244 (35%), Gaps = 10/244 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V          + S +        L        +++   + +     ++   +P 
Sbjct: 260 VLLKDVARVEVGGDSYETSSRLNGKPAAALAVKLATGANALEAAKAVRAKLAELQPQLPK 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +         R  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 DVAISYPYDTTPFVRISIEEVVKTLFEAVVLVFLVMYLFLQNVRATLIPTIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ++ G   N+ ++ A++  IG  V+D +VV + +     +    +  +    K++ +
Sbjct: 380 FGVMSMIGFSINVLSMFAMVLAIGLLVDDAIVVVENV--ERIMSEEKLEPKAATRKALGQ 437

Query: 768 TLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             G  +   +   +    +PMA + GS       F+I +   ++++   ++ +   +   
Sbjct: 438 ITGALI--GVTTVLTAVFIPMAFFSGSTGAIYRQFSITIVSAMLLSVVLALTLTPALCAT 495

Query: 823 IYDW 826
           +   
Sbjct: 496 LLKR 499



 Score = 45.1 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 63/198 (31%), Gaps = 9/198 (4%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            +    +PG S  +                            +   +      + +++  +
Sbjct: 838  ISASTRPGVSTGEAMNAVEQLAHKLPPGFALEWTGQSYQEKQAGSQATTLYAISLVVVFL 897

Query: 679  AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
             +     +   W   L  +  + L +   L      G+  ++     +L  IG S  + +
Sbjct: 898  CLAG---LYESWSIPLAVLLVVPLGVLGALLAAHGRGLSNDIYFKVGLLATIGLSTKNAI 954

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ +  +    L        D + ++ +  L   + TS+A    VLP+ +    G     
Sbjct: 955  LIVEFAKD---LQAQGYGLVDAVLEAAHMRLRPILMTSLAFVFGVLPLVISTGAGAGARH 1011

Query: 796  SFAIPMAFGIVVAASSSI 813
            +    +  G++ A   +I
Sbjct: 1012 AIGTGVTGGMIAATVLAI 1029


>gi|258406458|ref|YP_003199200.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfohalobium retbaense DSM 5692]
 gi|257798685|gb|ACV69622.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfohalobium retbaense DSM 5692]
          Length = 1042

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 78/610 (12%), Positives = 170/610 (27%), Gaps = 38/610 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  +I   G++           +   P   P   I            V     
Sbjct: 9   RPRFAVVLAILITLAGMIAV-----YSLPVAEHPDITPP-VIR--------VSAVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + ++                + ++F+     +     V   LQ 
Sbjct: 55  SEVVRDTIAAPIEKQMNGVEDMLYMQSESTDDGRYSLEVTFSVDSDPDIDQVNVQNRLQL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L        +         + +            +  S  I R   D +   +   
Sbjct: 115 AESSLPQAVLDQGIDVRRRSSDMLGVVSFTSPDGSRDRLFMSNYISRTISDAVQRVDGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L  L     ++       +        G          QY
Sbjct: 175 DVFIFGEAEYSMRIWVDPDKLTALDMNGNEVIQAIREQSVQATLGSIGTAPTVPGQKLQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +                 +    I        +        +           
Sbjct: 235 TLKAQGRL-------------KSAEEFENIIIRSNDQGGQVRVKDVAEVELGNKTYSAAG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          ++ +   T+E A                  +          +   
Sbjct: 282 NFNNQAAVNVALYRSSEANAMETMEAARAELERQAELLPEGMTYTIPYDTTKYIQATIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A+V  LV++V+F+ +   +  L+   ++ +++I T A L  +G  L   ++  ++
Sbjct: 342 IVTTLALVFILVVLVIFIFLQNFRATLIPAAAVPVSIIGTFAFLLAIGFNLNTITLFALI 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      ++ S   +      +  + I  +++  L   + + F 
Sbjct: 402 LAIGLVVDDAIVVVENVHRIMEEEDLSPKQASIKAMEQVSAPIVATSLVLLAIFIPVAFM 461

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSRFFLI 534
            G      + F +T+ +SI+IS F A+++  A+   ++   K  +               
Sbjct: 462 PGITGLLYKQFGLTLCVSIIISSFCALTLSPALCTVLLSKPKPHNRGPFGWFNSLLGKTR 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANRPVDL 591
               ++     R   V + +   +      F   L       + KGG  + V       L
Sbjct: 522 FGYTSVVGWMIRHLAVALGLFLLVLGGSWYFYGTLPTSFLPQEDKGGFLIDVQLPEGATL 581

Query: 592 SVVRSNLESL 601
               +  E  
Sbjct: 582 QRTETVTERA 591



 Score = 86.7 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 91/265 (34%), Gaps = 15/265 (5%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + + +N       V+   E            +      V +             +E 
Sbjct: 248 FENIIIRSNDQGGQVRVKDVAEVELGNKTYSAAGNFNNQAAVNVALYRSSEANAMETMEA 307

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + ++     L     T  +    ++ +   I + +  + +  I +++ I+I  + +   
Sbjct: 308 ARAELERQAELLPEGMTYTIPYDTTKYIQATIDEIVTTLALVFILVVLVIFIFLQNFRAT 367

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKL 750
           L     + + I  T  F    G   N   + A++  IG  V+D +VV +   R+ +    
Sbjct: 368 LIPAAAVPVSIIGTFAFLLAIGFNLNTITLFALILAIGLVVDDAIVVVENVHRIMEE--- 424

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               +S +    K++ +     V TS+      +P+A   G        F + +   I++
Sbjct: 425 --EDLSPKQASIKAMEQVSAPIVATSLVLLAIFIPVAFMPGITGLLYKQFGLTLCVSIII 482

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           ++  ++ ++  +   +      + R
Sbjct: 483 SSFCALTLSPALCTVLLSKPKPHNR 507



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 50/449 (11%), Positives = 123/449 (27%), Gaps = 31/449 (6%)

Query: 404  LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
            LL  L     + +I G  L  G A +   L+ +   +  ++ Q     ++    +    +
Sbjct: 594  LLQELEGVENVLAINGFSLMTGSAENVGFLIAD--LDPWQERQDPELHINALVDKTNKKL 651

Query: 464  FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
                   + + V     G G   GF   +  +          + R +     +  K+  +
Sbjct: 652  NAITTATIRSFVPPPIQGLGLTGGFDFRLQATQGQPPTELAEVARGLAGRANQDPKLTRV 711

Query: 524  DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                 +    I   +    M      V          +   + +  N            V
Sbjct: 712  YTTFSANTPQINLELDRSQMGQLGVQVSRLFGTLNQQLGAQYVNDFNLYGR-----TYQV 766

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL-------- 635
                  +    R ++  L + +   QN   E    +             +          
Sbjct: 767  KMRSQAEYRQSRQDILDLHVVNDRGQNVPVENFVDLSTTIGAKTVNRYNQFSSAAIKGQA 826

Query: 636  -------EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY---IW 685
                   + +                        +E    G V  + +   +  Y   + 
Sbjct: 827  APGYSSGQAMAAMQQLADRTLPDGYAFEWSSMSYQEQKASGTVIYLYALAIVFAYLFLVA 886

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +   W   L  + ++++    +     +     ++ A   ++ L+G +  + +++ +  R
Sbjct: 887  LYESWNLPLSIVLSVVVATLGSFVGLWVTSYSLSIYAQIGLVLLVGLAAKNAILIVEFAR 946

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
                  T   +      ++        + T++   + V P+      G +      I + 
Sbjct: 947  ---SSKTEGATTYKAAIEAAGVRFRPVLMTALTFILGVAPLVWATGAGAASRRHIGIVVF 1003

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G+V A +  I +   +  F    R K  
Sbjct: 1004 SGMVAATTLGILLIPSLYYFFQRIREKGK 1032


>gi|254225176|ref|ZP_04918789.1| protein-export membrane protein SecD [Vibrio cholerae V51]
 gi|125622275|gb|EAZ50596.1| protein-export membrane protein SecD [Vibrio cholerae V51]
          Length = 612

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 150/508 (29%), Positives = 257/508 (50%), Gaps = 28/508 (5%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ E +  
Sbjct: 117 VSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAERLRG 176

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            S++ + N    +F     +      V  +LQ        +  +   +     ++ +  S
Sbjct: 177 VSVQAMGND---AFEVRTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQLQVQPS 225

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
           Q N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + ++G 
Sbjct: 226 QQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKNVIGA 285

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           TA ++F++           +    L D +G   ++  +  +SG H+  A A  D      
Sbjct: 286 TASLAFYEAKS--QTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNMGMSE 343

Query: 269 VVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
           V        G            +    V R+         +    + +    Q+    + 
Sbjct: 344 VNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQLGSQF 403

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+ + + 
Sbjct: 404 RITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLT 463

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNE 436
           FM + Y   G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 464 FMALWYRHLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFE 523

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           RIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T+GL +
Sbjct: 524 RIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGL 583

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSID 524
           L SMF+ +   RA++  +      + + 
Sbjct: 584 LTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 82/203 (40%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           + +    A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-HLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|317048063|ref|YP_004115711.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Pantoea
           sp. At-9b]
 gi|316949680|gb|ADU69155.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. At-9b]
          Length = 1053

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/686 (9%), Positives = 186/686 (27%), Gaps = 42/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   G+L           + ++P   P          +          
Sbjct: 8   RRPVFAWVIAICIMMFGILSI-----KNLPIAQYPDVAPP---------QISIQATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK--ITLSFADSRFKENIADKVTLFL 119
             + +   +    ++  + L        +      +  IT++F      +    +V   +
Sbjct: 54  SAETLESSVTQVIEQQLTGLDGLLYFSSTSTASTGQVKITVTFEQGTDPDIAQVQVQNKV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q   S+L     +  +     +   +++         + + + +  ++    D +     
Sbjct: 114 QQAESRLPDAVTQQGVTVEKAQSDFLLIMALYDKNDKATSSDVADYLVSNMEDTLARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP++L       + +       N        G +        
Sbjct: 174 VGSVQVFGA-EYAMRIWLDPAKLASYSLMPSDVETALEAQNTQVSSGQIGAQPASKEQQL 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V  +  +                 +    +   +             +         
Sbjct: 233 VATVRSRSRL-------------QTPEQFRNIVLKSQTDGSVVHLSDVARVEMGDDDYSA 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +      +       +  +   T E         R+             +      S 
Sbjct: 280 NVLANGHPASGIAIQLASGANALSTAENVKNTVDEFRSSLPTGYDIAYPLDSTDFVKISI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV+IV+F+ +   +  L+   ++ + ++ T  +L++   ++   ++ G
Sbjct: 340 EEVVKTLVEAIILVVIVMFVFLQNIRTTLIPAIAVPVVLLGTFGVLAVFNYSINTLTMFG 399

Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +      +      + +          I  + + + +   + 
Sbjct: 400 VVLAIGLLVDDAIVVVENVERVMREEGLPPREATEKSMKEITGALIGIALVLSAVFLPMT 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINP 527
           FF G      R F+IT+  S+++S+  A+++  A+   +         +       + + 
Sbjct: 460 FFSGSTGVIYRQFSITIVSSMVLSVVVALTLTPALCATLLKPHDHESGQKGFFGWFNRSY 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   + +      +  + +  ++L   C+   L         + +G I +      
Sbjct: 520 EKIQARYQEKVGHVVHSSVRYLLLYAVLLIGCAFMYLRLPTGFLPTEDQGYIMVQYTLAP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +        +Q    + +  +   + LV      G           +K        
Sbjct: 580 GATENRTSEVRRQIQQYFATKEKDNVNVSMLVNGFSFAGSGQNAGIGFISLKNWNDRKGA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
            +T              +    +  +
Sbjct: 640 ENTADAIAGRAMMNLSGIRDAQVFVL 665



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 78/217 (35%), Gaps = 6/217 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V            +        + +        ++++    ++    +    +P 
Sbjct: 262 VHLSDVARVEMGDDDYSANVLANGHPASGIAIQLASGANALSTAENVKNTVDEFRSSLPT 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                  +      +  I + +  ++ + I ++I +++  +     L     + + +  T
Sbjct: 322 GYDIAYPLDSTDFVKISIEEVVKTLVEAIILVVIVMFVFLQNIRTTLIPAIAVPVVLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A+F    N   +  V+  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 382 FGVLAVFNYSINTLTMFGVVLAIGLLVDDAIVVVENV--ERVMREEGLPPREATEKSMKE 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
             G  +  ++      LPM  + GS       F+I +
Sbjct: 440 ITGALIGIALVLSAVFLPMTFFSGSTGVIYRQFSITI 476



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 71/212 (33%), Gaps = 5/212 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +A    D +       S      S+      +   +      G + +     + +    
Sbjct: 788 FVAGTDSDGNTTMVPFSSFSSSHWSYGPDVLSRYNGLSSYEIEGSAASGKSSGDAMTAME 847

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTL 700
                L         G      L     + +  IS I + + +   ++ W      +  +
Sbjct: 848 KLASKLPAGTTYAWSGLSYQERLSGNQAMSLYAISLIVVFLCLAALYESWSVPFSVMMVV 907

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +   L    L G+E ++    A+LT+IG S  + +++ +   +N   Y    +    
Sbjct: 908 PLGVFGALLGVTLRGLENDVYFQVALLTIIGLSAKNAILIVEFAEEN---YRKGENLVKA 964

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
              +    L   + TS+A    VLP+A+  G+
Sbjct: 965 AVHAAAMRLRPIIMTSLAFTAGVLPLAISTGA 996


>gi|194290894|ref|YP_002006801.1| acridine efflux pump acrb-like protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193224729|emb|CAQ70740.1| component of acridine efflux pump, similar to acrB (RND family)
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1062

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 60/537 (11%), Positives = 137/537 (25%), Gaps = 39/537 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+      L +  + +FP   P               + +    
Sbjct: 10  RPIFASVVSIVITVGGLVA-----LTKLPIAQFPDITPP-------------SITVTTRY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + Q  +  +   +        +   S       +T  F      E     V  
Sbjct: 52  PGASAEVVAQNVAAPIEQQVNGADRMMYMNSTSSSTGDLTLTTYFEIGTDPELAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L        +         +++                       +D +   
Sbjct: 112 RVNLALPTLPEAVTSQGVSVQKRSSAFMMVIAIYSPDASYDQTFVGNYANIYVLDALKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+  L  TT  +       N        G      + 
Sbjct: 172 PGANQSSIFGSPDYAMRIWLKPDRMASLGITTEDVKNAVANQNQQFSAGRIGQSPTDGAV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + +  K  ++                   + +                +        
Sbjct: 232 QLTFPIATKGRMT------------EPAEFDNMILRAQSGDVALVRLKDIGHAELGSKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +      A L+    P     +          
Sbjct: 280 SLRSRYKGKTATLMAVYQQPGANALDVSKQVRATLAELKKSFPPGLEYEIALDTTTFVQE 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +  LV   ++ +++I     +S  G ++ + ++
Sbjct: 340 SIDEVVHTLRDAVILVILVVYLFLQSFRATLVPILAVPVSIIGAFVGMSAFGFSVNMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473
            G+VL IG+ VD  I+V E +             +              I    +   I 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMVEFKLPPKEAAKKAMDEVSGPVVAIVLVLLAVFIP 459

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
              L    G   + FAIT+ +S+++S   A+++  A+   +++  + K         
Sbjct: 460 VAFLSGITGQLYKQFAITIAVSVVLSGVVALTLSPALAAILLKPGEHKKNRFFTWFN 516



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 93/241 (38%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +       +   +  +        +   Q    +++  ++ +     ++ +  P 
Sbjct: 264 VRLKDIGHAELGSKDYSLRSRYKGKTATLMAVYQQPGANALDVSKQVRATLAELKKSFPP 323

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                  +      +E I + +  +  + I +++ +++    +   L  I  + + I   
Sbjct: 324 GLEYEIALDTTTFVQESIDEVVHTLRDAVILVILVVYLFLQSFRATLVPILAVPVSIIGA 383

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N+  +  ++  IG  V+D +VV + + +NM  +   +  ++   K+++E
Sbjct: 384 FVGMSAFGFSVNMLTLFGMVLAIGIVVDDAIVVIENVERNMVEF--KLPPKEAAKKAMDE 441

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V   +      +P+A      G +   FAI +A  +V++   ++ ++  +   + 
Sbjct: 442 VSGPVVAIVLVLLAVFIPVAFLSGITGQLYKQFAITIAVSVVLSGVVALTLSPALAAILL 501

Query: 825 D 825
            
Sbjct: 502 K 502



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 63/169 (37%), Gaps = 6/169 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
              +     + + + + +  +++ W   +G +  +   +   L    + G+  ++     +
Sbjct: 870  TAVYVFAFALLMVFLILAAQYEKWSLPIGVLLAVPFALFGALLAILMRGMLNDVYFQIGL 929

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
              LI  +  + +++++   +  +     +S  D    +    L   + TS+A  +  +P+
Sbjct: 930  TVLIALAAKNAILIFEFAVEMRQKE--GLSAYDAAIHAAKLRLRPIIMTSLAFILGCVPL 987

Query: 787  AVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+  G+      S    +  G++ A   ++F        +     +  R
Sbjct: 988  AIASGASAASRQSLGTGVIGGMLGATVIALFFIPMFFWGLEVLAERKPR 1036


>gi|167579997|ref|ZP_02372871.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis TXDOH]
          Length = 1066

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 158/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       IT++FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        R        IG      
Sbjct: 229 VLQATITEATLL-------------QTPEQFGDILLKVNQDGSRVRLKDVAQIGLGGETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        + A      +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNASRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     +++   
Sbjct: 258 SRVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 136/519 (26%), Gaps = 38/519 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    D + S     G       Q    + +   D   +++ + KV   +  
Sbjct: 590  LANISDYLLTQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSSQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  L++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLRGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVL 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             L      G  +       +   ++ + F AI ++    
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|34495889|ref|NP_900104.1| acriflavin resistance protein D [Chromobacterium violaceum ATCC
           12472]
 gi|34101744|gb|AAQ58112.1| acriflavin resistance protein D [Chromobacterium violaceum ATCC
           12472]
          Length = 1047

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/541 (12%), Positives = 151/541 (27%), Gaps = 40/541 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            ++++P  +P               + +   
Sbjct: 8   RRPIFASVISIVIMLAGLAAI-----KALPIEQYPEIVPPV-------------VNVTAS 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       L   +        +   S       +T+SF      +     V 
Sbjct: 50  YPGASAEVIANTVAAPLEQAINGVDDMLYVQSNSASNGTLSLTVSFKIGTNADQATINVN 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q V S+L  + ++  +    +    + +            +  S   +   +D++  
Sbjct: 110 NRVQSVLSQLPEEVRRQGVNVRKKSATILQVVSLFSPDNSHDTLFISNYALLNVVDELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                  +        +     P +L QL  T + ++      N+       G       
Sbjct: 170 VPGVGDVVNFAGQDYSMRIWLKPDKLAQLKLTPSDVAAAIREQNSQFAAGKLGAEPTPQK 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y V  +  +S             +  +    I                 +      
Sbjct: 230 LDFTYTVTTQGRLS-------------EPEEFENIIVRANPDGSAVKLKDVARVELGALS 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +   T +        L           +         
Sbjct: 277 YDFHGKHNGKATIPIGIFLAPGANQLATAQAVETEMLRLSKSFPTGLSYGIPYDTTKFVE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T A    LV +V+F+ +   +  L+   ++ ++++   A +   G T+   +
Sbjct: 337 VSIEEVYKTLAEAMVLVFLVVFLFLQNWRATLIPCLAVPVSIVGAFAGMYAFGFTINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALI 472
           + G+VL IG+ VD  I+V E +     ++  S   +          A   I     +  I
Sbjct: 397 LFGLVLAIGIVVDDAIVVLENVERLMTQEGLSPREASLKAMQEVSGALVAIVLVLCSVFI 456

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
               L    G   + FA+T+ +S++IS   A+++  A+   I++ +             +
Sbjct: 457 PVAFLGGIAGQMYKQFAMTIAVSVVISGIVALTLTPALCALILKSEHQHQNRFFEWFNGW 516

Query: 533 L 533
            
Sbjct: 517 F 517



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 51/446 (11%), Positives = 134/446 (30%), Gaps = 21/446 (4%)

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            A+++   A     S AG  +  G    +  +    ++  + +      S+ +        
Sbjct: 593  AMMANNPAVKDRMSFAGFDILSGGNKSNAGVSFITLKPWDERKSPELSSMAVVKDVFAKG 652

Query: 463  IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
                    ++A       G     GF   +      +      I + M+    +  ++K 
Sbjct: 653  AMGVTDGIILAFNPPPISGMSNTGGFEAYVQDRAGRTPAELGEITKKMVAAAAKRPELKG 712

Query: 523  IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +     +    +   +     +A    V         +   L+ +  N        +QL 
Sbjct: 713  VQTTFSASVPQVFVKLDRDKAKALGVPVNSVFDTMQSTFGALYVNDFNK-FGRTFRVQLQ 771

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL------- 635
              A     +  +R+     Q G +               +     +V     L       
Sbjct: 772  SEAPFRTKVDDLRNVYVRSQTGQMIPLTALVTIQQTTGPETLERFNVFPAAKLVGGPAPG 831

Query: 636  ----EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RF 688
                + +               +        +E    G   ++     +++++ +     
Sbjct: 832  YSSGQALTALEEVAKETLPDGYSLAWTGSAFQEKSTSGSSTLVFGFGMIMVFLILAAQYE 891

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +W   +  +  +   +   L    L G+  ++    A++TLIG S  + +++ +     +
Sbjct: 892  RWTLPISVLMAVPFAVFGALMANWLRGLANDVYFQVALVTLIGLSAKNAILIVEFA---V 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +     ++ ++   ++        V TS+A  +  +P+A+    G +   S    +  G+
Sbjct: 949  QKLEEGMALKEAALQAARLRFRPIVMTSLAFVLGCVPLAISSGAGSASRHSIGTGVIGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            + A   + F      + I     +N 
Sbjct: 1009 LAATFIATFFIPLFFILIMKLGKQNK 1034



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 52/133 (39%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + I         FG   N   +  ++  IG  V+D +VV + +     
Sbjct: 364 WRATLIPCLAVPVSIVGAFAGMYAFGFTINTLTLFGLVLAIGIVVDDAIVVLENV--ERL 421

Query: 750 LYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
           +    +S R+   K++ E    L   V    + FI V  +    G +   FA+ +A  +V
Sbjct: 422 MTQEGLSPREASLKAMQEVSGALVAIVLVLCSVFIPVAFLGGIAGQMYKQFAMTIAVSVV 481

Query: 807 VAASSSIFIAAPI 819
           ++   ++ +   +
Sbjct: 482 ISGIVALTLTPAL 494


>gi|86358959|ref|YP_470851.1| multidrug-efflux system, acriflavin resistance protein [Rhizobium
           etli CFN 42]
 gi|86283061|gb|ABC92124.1| multidrug-efflux system, acriflavin resistance protein [Rhizobium
           etli CFN 42]
          Length = 1061

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/698 (10%), Positives = 187/698 (26%), Gaps = 58/698 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +   +G +        Q  + ++P   P               +V+    
Sbjct: 10  RPIFAAVISILFLVVGGIA-----YTQLPVAQYPEIAPPT-------------IVVRTSY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     +    +T++F      + +   V  
Sbjct: 52  PGADPQTIADTVSTPLEQQINGVEDMLYMSSYSSADGAISLTITFKLGTDLDKVQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + T       +++            +  S     +  D +   
Sbjct: 112 RVSIALPRLPEEVQRLGVTTDKSSPDLMMVVHLLSPSHRYDQLYVSNYARNRIRDVLVRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     T+  +       N    G   G   +   +
Sbjct: 172 DGVGDVQVFGERQYSMRIWLDPEKLSAYGMTSDDVVSALREQNVQVSGGKIGAPPVTGRN 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y V      S +                   I       R         I       
Sbjct: 232 AFEYTVRTDGRFSDVREFRY-------------VIVKSTTSGRLVQLQDVARIELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +   T      L   +           +          
Sbjct: 279 VTNSYLNNDPAVALGIFARPGTNALDTAHQVQALMKDISQNFPEGLEYRIVYDTTEFISA 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T    A LV IV+ + +   +  ++   +I +++I T A+L   G +L + ++
Sbjct: 339 SINEVYKTIVEAAILVAIVVLVFLQSWRTAIIPIVAIPVSLIGTFAVLLAFGFSLNMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  +   +  +      + +   ++  +   V  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNLARGMTPKQASHVTMDEVGTAVVAISLVLIAVFVPT 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID---------- 524
            F     G   R FA+T+ ++  IS   ++++  A+   +++    +             
Sbjct: 459 AFIPGISGQFYRQFAVTIAVTTAISALNSLTLSPALAGILLKAHDHEKKRKSIASRLGAG 518

Query: 525 ----INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-----YGIDF 575
                N             ++ + + + G+  S++     +   +               
Sbjct: 519 LASGFNRGFDRMSSGYSWTVRHLVSSWVGLTCSMVAFAALLGATWYMTTRVPSGFIPTMD 578

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G   + V       L+   + ++ +     +         F         ++     V 
Sbjct: 579 QGYAIIVVQLPDGASLARTDAVIKRVGDIARTVPGVGNAVQFAGFSGATFTNASNSGVVF 638

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              K                       + +    I+ +
Sbjct: 639 VPFKSFAEREEDGENANKIIGELFGKLQSIQEAFIIAI 676



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 56/436 (12%), Positives = 132/436 (30%), Gaps = 20/436 (4%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
                   AG          ++ +V    +    + +    + +      +  +       
Sbjct: 614  VGNAVQFAGFSGATFTNASNSGVVFVPFKSFAEREEDGENA-NKIIGELFGKLQSIQEAF 672

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +IA       G G   GF + +       M   + + R MM      + +  +       
Sbjct: 673  IIAIPPPSVRGVGNSGGFKMQISDLENPDMTRVLGLARQMMGAAATTEGLTGVFTTFSDA 732

Query: 531  FFLIPDCIAIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   I     R            +SI   +  +      G  Y +  +   Q  +  
Sbjct: 733  SPQYFLSIDRDKARFLNVPIPNIFNALSINLGVAYVNDFNAFGRVYQVRAQADRQYRMDK 792

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGE----KNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               + L V  +    + +G +            + + + +      +           KK
Sbjct: 793  EDILALKVRSATGALVPLGTLMDIQDSSGPALVQRYNMYVSVPLQGNPTPGTSTGDALKK 852

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAI 697
            + E+        T     +++ +    G   V I +   + +++ +      W   L  I
Sbjct: 853  MEELAAKILPPGTTFEWTELAYQETHTGNTAVYIFALSVIFVFLALAAQYESWVLPLAII 912

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
              + L +   L   AL G++ N+     ++ LIG +  + +++ +  R   +      S 
Sbjct: 913  LIVPLAVLAALIGVALRGMDNNVLTQIGLIVLIGLAAKNAILIVEFAR---QAEEEGKSP 969

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             +   ++ +  L   + T+ A    VLP+A+    G  +  S    +  G++      +F
Sbjct: 970  VEAAIEASHLRLRPILMTAFAFIFGVLPLAIATGPGAEMRQSLGTAVFSGMLGVTLFGLF 1029

Query: 815  IAAPILLFIYDWRAKN 830
            +     + +   R   
Sbjct: 1030 LTPVFYVVLRGRRRSR 1045



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 94/259 (36%), Gaps = 10/259 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              + R V L  V       Q    +    +     L        +++     ++ + K 
Sbjct: 256 STTSGRLVQLQDVARIELGAQDYVTNSYLNNDPAVALGIFARPGTNALDTAHQVQALMKD 315

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           I++  P            +     I +    ++ +AI + I + +    W  A+  I  +
Sbjct: 316 ISQNFPEGLEYRIVYDTTEFISASINEVYKTIVEAAILVAIVVLVFLQSWRTAIIPIVAI 375

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T      FG   N+  +  ++  IG  V+D +VV + + +N+      ++ +  
Sbjct: 376 PVSLIGTFAVLLAFGFSLNMLTLFGLVLAIGIVVDDAIVVVENVERNLA---RGMTPKQA 432

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              +++E     V  S+      +P A      G     FA+ +A    ++A +S+ ++ 
Sbjct: 433 SHVTMDEVGTAVVAISLVLIAVFVPTAFIPGISGQFYRQFAVTIAVTTAISALNSLTLSP 492

Query: 818 P---ILLFIYDWRAKNARI 833
               ILL  +D   K   I
Sbjct: 493 ALAGILLKAHDHEKKRKSI 511


>gi|254283605|ref|ZP_04958573.1| protein-export membrane protein SecF [gamma proteobacterium
           NOR51-B]
 gi|219679808|gb|EED36157.1| protein-export membrane protein SecF [gamma proteobacterium
           NOR51-B]
          Length = 298

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 91/286 (31%), Positives = 164/286 (57%), Gaps = 5/286 (1%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           M+ RF     S++    +I  + T  LN+G+DF GG+ + ++    V+LS +R  +  L 
Sbjct: 1   MKWRFVAAAFSVVAITVAIGSISTRSLNWGLDFTGGVSVELVYEESVNLSDLRQEVADLG 60

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                  +F  +++ LVRL     +   QT    +V+    +      +     VGP++ 
Sbjct: 61  YLGAVVVSFGSDRDVLVRLPEGYTNDDGQT----LVQSLRAQTDQDIELAYLGFVGPQVG 116

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            EL  +G + ++++   +++Y+  RF++ FALGA+  L  D+  TLGFF+L G+EF+LT 
Sbjct: 117 EELREQGGLAMLLALGLVMLYVGFRFQFKFALGAVVALAHDVLFTLGFFSLTGLEFDLTV 176

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +AA+L ++GYS+ND +VV DR+R+N +      +  +++D S++ETLGR+V TS+   + 
Sbjct: 177 LAALLAVVGYSLNDTIVVADRIRENFRK-VRRSTPSEVLDISLSETLGRTVVTSLTTLLV 235

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  +A++GG +I  FA+ +  G+ V   SSI+++A  LL +   + 
Sbjct: 236 LAALALFGGEMIYGFAVALLVGVAVGTYSSIYVSATTLLALGVTKE 281


>gi|113869304|ref|YP_727793.1| cation/multidrug efflux pump [Ralstonia eutropha H16]
 gi|113528080|emb|CAJ94425.1| Cation/multidrug efflux pump [Ralstonia eutropha H16]
          Length = 1052

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 73/656 (11%), Positives = 168/656 (25%), Gaps = 42/656 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L +  + +FP   P               + +    
Sbjct: 10  RPIFASVLSIIIVVGGLVA-----LTKLPIAQFPDVTPP-------------SITVTTRY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + Q  +  +   +        +   S       +T+ F      +     V  
Sbjct: 52  PGASAEVVAQNVAAPIEQQVNGADRMMYMNSTSSSTGDLTLTVYFEIGTDPQLAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L        +         +++                       +D +   
Sbjct: 112 RVNLALPTLPEAVTAQGVSVQKRSSAFMMVIAIFSPDNSYDQTFVGNYANIYVLDALKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+  L  TT  +       N        G     D  
Sbjct: 172 PGANQSAIFGNPDYAMRLWLRPDRMASLGITTEDVKNAVSAQNQQFSAGRIGQSPTTDPV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + +  K +++                   + +      A              +   
Sbjct: 232 LQTFPIATKGQMT------------EPAEFENMILRAQSGDAALVRLKDIGRAELGVKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +      A L+    P     V          
Sbjct: 280 SLRSRYKGKTATLLAVYQQPGANALDVAKQVRGTLAELKKSFPPGLEYEVALDTTEFVNE 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV++V+++ +   +  +V   ++ +++I     +S+ G ++ + ++
Sbjct: 340 SINEVVHTLRDAVILVILVVYLFLQSLRATIVPILAVPVSIIGAFVGMSMFGFSVNMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473
            G+VL IG+ VD  I+V E +             +              I    +   I 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMVEFKLPPKEAAKRAMDEVSGPVVAIVLVLLAVFIP 459

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF-- 531
              L    G   + FA+T+ +S+++S   A+++  A+   +++  + K            
Sbjct: 460 VAFLSGITGQLYKQFAVTIAVSVVLSGVVALTLSPALAAILLKPGEHKKNRFFQWFNNSF 519

Query: 532 -FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             LI        +  R   + I I+  +  + +L    +               A    D
Sbjct: 520 DRLIQGYDKSLQVVIRRTVISIVIILVMIGVSVLMFVRIPSSFLPVEDQGYLFGAVVMPD 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + +          +  +    G  +      Y   DS  +     +         
Sbjct: 580 AASLDRTGNLSSRAEAWYAKQPGVSSVASVDGYSLIDSQNKANASTLFITLKGFHD 635



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 43/428 (10%), Positives = 131/428 (30%), Gaps = 9/428 (2%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           +  + +T +      + +   +  D  +   +     N    ++  ++            
Sbjct: 77  MMYMNSTSSSTGDLTLTVYFEIGTDPQLAQVDVQNRVNLALPTLPEAVTAQGVSVQKRSS 136

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +   I +    +   F G     + +     I  +  +AI       + +       
Sbjct: 137 AFMMVIAIFSPDNSYDQTFVGNYANIYVLDALKRIPGANQSAIFGNPDYAMRLWLRPDRM 196

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           +                  QF   R      +                         ++ 
Sbjct: 197 ASLGITTEDVKNAVSAQNQQFSAGRIGQSPTTDPVLQTFPIATKGQMTEPAEFENMILRA 256

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                  V L  +      ++   +  +        L   Q    +++   + +     +
Sbjct: 257 QSGDAALVRLKDIGRAELGVKDYSLRSRYKGKTATLLAVYQQPGANALDVAKQVRGTLAE 316

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           + +  P        +   +   E I + +  +  + I +++ +++        +  I  +
Sbjct: 317 LKKSFPPGLEYEVALDTTEFVNESINEVVHTLRDAVILVILVVYLFLQSLRATIVPILAV 376

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + I       ++FG   N+  +  ++  IG  V+D +VV + + +NM  +   +  ++ 
Sbjct: 377 PVSIIGAFVGMSMFGFSVNMLTLFGMVLAIGIVVDDAIVVIENVERNMVEF--KLPPKEA 434

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             ++++E  G  V   +      +P+A      G +   FA+ +A  +V++   ++ ++ 
Sbjct: 435 AKRAMDEVSGPVVAIVLVLLAVFIPVAFLSGITGQLYKQFAVTIAVSVVLSGVVALTLSP 494

Query: 818 PILLFIYD 825
            +   +  
Sbjct: 495 ALAAILLK 502



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 66/183 (36%), Gaps = 8/183 (4%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                +   E        ++ +   +++++ +     KW    G +  +   +   L    
Sbjct: 856  AWSGQAYEEKTAGSTAAMVFAFALLMVFLILAAQYEKWTLPFGVLLAVPFALFGALVAIL 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G++ ++     +  LI  +  + +++++   +    +   +S  D    +    L   
Sbjct: 916  LRGMQNDVYFQIGLTVLIALAAKNAILIFEFAVE--IRHKEGLSAYDAALHAARLRLRPI 973

Query: 773  VYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + TS+A  +  +P+A+  G+      S    +  G++ A   ++F        +     +
Sbjct: 974  IMTSLAFILGCVPLAIASGASAASRQSLGTGVIGGMLGATVIALFFIPMFFWGLEVMSER 1033

Query: 830  NAR 832
              +
Sbjct: 1034 KPK 1036


>gi|86152488|ref|ZP_01070693.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613290|ref|YP_001000771.1| preprotein translocase subunit SecD [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167005687|ref|ZP_02271445.1| preprotein translocase subunit SecD [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85843373|gb|EAQ60583.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249148|gb|EAQ72109.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 526

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 289/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++  +   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSE---------RGAKINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 52  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIAKVENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + + +      I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------KGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTVAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS 218

Query: 232 ------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++ PV++ + +  G+++F + 
Sbjct: 219 YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGVAGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 459 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRR 526



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ ++I++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGV-AGIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRASIEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      K+ 
Sbjct: 458 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSN 515


>gi|323497192|ref|ZP_08102212.1| putative acriflavin resistance protein [Vibrio sinaloensis DSM
           21326]
 gi|323317767|gb|EGA70758.1| putative acriflavin resistance protein [Vibrio sinaloensis DSM
           21326]
          Length = 1050

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/692 (11%), Positives = 183/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPKISPP-------------SVSVTAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYNLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++      +           I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPEGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ +       N        G     D+
Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYAALAEQNVQVAAGRVGAAPYNDA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVGEFENVVLRANSDGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGSGKFRGQDASIVTLSLQSDANALESGQAVMELLDNLSVNFPEGMAYEASYDTTLFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSMSPRKATLLAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +   +L    G   R FA+T+ +S++IS   A+++  A+   +         +     + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTSRWFAVFNS 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  +     T       + KG + + V  
Sbjct: 517 GLDKVTTKYGQVAGFLVKKSVLLVTFFFVAVAAVTFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS      E L          DG              +     +   +       
Sbjct: 577 PDAASLSRTEEVTEQLITMVEQEPGVDGVTVANGFAFMTGAAASNGASLFIKLHDWDERN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +  I      R         V+ + 
Sbjct: 637 ALEGDHSSNAIAQRINGRAATE-LPQAVVFAM 667



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 83/235 (35%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D S +    + + +        +++   + +  +   ++   P 
Sbjct: 262 VYLKDVARVELGKKFYDGSGKFRGQDASIVTLSLQSDANALESGQAVMELLDNLSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                          E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GMAYEASYDTTLFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         S+S R     ++ E
Sbjct: 382 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPSMSPRKATLLAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      LP+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 52/447 (11%), Positives = 120/447 (26%), Gaps = 26/447 (5%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLD-MGFSRAYSTIF 464
            L+      P + G+ +  G A  +    +       +  +     +L+    S A +   
Sbjct: 592  LITMVEQEPGVDGVTVANGFAFMTGAAASNGASLFIKLHDWDERNALEGDHSSNAIAQRI 651

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF---IIRYKKMK 521
            +      +   V+F  G  AV G     G   ++      S     M+    I    K  
Sbjct: 652  NGRAATELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMGQVIEEANKQP 711

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             I     +    +P                            L +  +N    F    ++
Sbjct: 712  EIAYTFSTFRANVPHYYVDIDREKAQQLGVPLSSIFQTLQGNLGSLYVNDFTMFGKNFRV 771

Query: 582  GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + A+              V  +       S  +        D    + +          
Sbjct: 772  TMQADSEHRSGMEDLERFHVRSAKGDMVPLSTLVSYEQIFEPDVAWRYNMYRSAIIQGQP 831

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
            A           +  +         +     ++ + +  G   +   +   + IY   + 
Sbjct: 832  APGYSSGDAIAAMERVAADILPHGYQYEWTGMAYQEVLAGNQAIFAFALALIFIYLFMVA 891

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   L  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892  QYESWSIPLAIILVVPIATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
              ++     ++      +           TS +  + + P+    G+      S  I + 
Sbjct: 952  --VEREDKDVAIDQAAVQGGKLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLI 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++    +  F+       +   R K
Sbjct: 1010 GGLLCVLLAGTFLIPGFYAMVQRQREK 1036


>gi|119896536|ref|YP_931749.1| RND efflux transporter permease [Azoarcus sp. BH72]
 gi|119668949|emb|CAL92862.1| RND efflux transporter, permease protein [Azoarcus sp. BH72]
          Length = 1052

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/691 (10%), Positives = 178/691 (25%), Gaps = 47/691 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        + ++P+  P          +   +       
Sbjct: 8   RPIFAWVVAIVIMLAGALSIL-----SLPVSQYPAIAPP---------QIAINATYPGAT 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        +     +  +TL+F      +    +V   LQ 
Sbjct: 54  AKAVEDSVTQVIEQKMTGLDNLLYMNSTSDSYGRVTVTLTFNAGTNPDIAQVQVQNKLQT 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +         +++           A + S  +     D +       
Sbjct: 114 ALPLLPQAVQQQGVQVAKSTRNFLMVLGFVSRDGSQSANDLSDFLASTVQDPLSRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP++L       + +       N        G        G   
Sbjct: 174 EVQVFGSQ-YAMRVWLDPAKLNNYKLMPSDVRSALEAQNTQVSAGQLGGTPALPGQGFTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 +           
Sbjct: 233 SITAQSRL-------------QTAEQFENILLKSSAQGGEVRLRDVARVEVGAQDYGFTA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +   T +        +          +           S   
Sbjct: 280 RYNGKPAAGIGIKLAAGSNALDTAKAVRKAIDGMSRYFPAGVEVVTPYDTTPFVRLSIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  L+   ++ + ++ T  L++  G ++   ++ G+V
Sbjct: 340 VVKTLVEAIVLVFLVMFLFLQNLRATLIPTIAVPVVLLGTFGLMAAFGFSINTLTMFGVV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMTEEGLSPREATRKSMGQITGALIGIGLVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSI 523
           GG      R F+IT+  ++ +S+  AI    A+   +                    +  
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVLVAIVFTPALCATMLKPVEKGHDHSEGGWFSGFFRWF 519

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  + +  +++  + +   L         + +G +   V
Sbjct: 520 NRMFARNTTRYESAVGGILRRSGRFLLIYALIVGVLAFLFLRMPTSFLPEEDQGVMFTQV 579

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +             L+ ++   +  +    +  F V      G           ++    
Sbjct: 580 MLPAGATQERTIEVLKKVENHFLEGEKDYAKSIFTVAGFSFAGSGQNMAIGFVHLRDWDE 639

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              P   ++           ++    +   +
Sbjct: 640 RKGPAGNVKAVAGRAMAAFSQIREAMVFAFV 670



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 78/197 (39%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A  + ++ + +     V + T  +T         E+++  +  +++  + M +++ 
Sbjct: 301 DTAKAVRKAIDGMSRYFPAGVEVVTPYDTTPFVRLSIEEVVKTLVEAIVLVFLVMFLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T G  A FG   N   +  V+  IG  V+D +VV + + 
Sbjct: 361 ---NLRATLIPTIAVPVVLLGTFGLMAAFGFSINTLTMFGVVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +S R+   KS+ +  G  +   +      +PMA +GGS       F+I + 
Sbjct: 417 -ERIMTEEGLSPREATRKSMGQITGALIGIGLVLSAVFVPMAFFGGSTGVIYRQFSITIV 475

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   +I     +
Sbjct: 476 SAMALSVLVAIVFTPAL 492



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 83/265 (31%), Gaps = 12/265 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +   A   V LS   S   +     +   N       L +         
Sbjct: 782  RMRPEDLTKWYVRNKAGEMVPLSAFASGHWAFGSPRLERYNGQSSVEVLGQGAPGVSSGD 841

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V E++ K    I    T  + E              +  +  S I + + +   ++
Sbjct: 842  AMAAVEEIIAKLPPGIGYEWTGTSYEERRSGSQAP----ALYAL--SLIVVFLCLAALYE 895

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L +   +      G+  ++     +L  IG S  + +++ +  ++ M
Sbjct: 896  SWSVPFAVMLVVPLGVLGAIVAATGRGLSNDVYFQVGLLATIGLSAKNAILIVEFAKEQM 955

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +      +  D   +++   L   + TS+A  + VLP+AV    G     +    +  G 
Sbjct: 956  EKEGK--ALIDATLEAVRMRLRPILMTSLAFGLGVLPLAVATGAGSGSQNAIGTGVLGGT 1013

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            + A    IF      + I       
Sbjct: 1014 IFATVLGIFFIPLFYVAIKRIFKDK 1038


>gi|330830497|ref|YP_004393449.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Aeromonas veronii B565]
 gi|328805633|gb|AEB50832.1| Inner membrane efflux transporter of RND family multidrug efflux
           pump [Aeromonas veronii B565]
          Length = 1049

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/685 (9%), Positives = 184/685 (26%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++PS  P            G         
Sbjct: 8   RPIFAWVIALVIMLAGSLAII-----KLPVAQYPSIAPPAV---------GISASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L              +  +TL+F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQIIEQNMTGLDHLLYMSSQSDSAGRVSVTLTFQPGTDPDIAQVQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  + ++  +         ++++         +  + +  ++    + +   +   
Sbjct: 114 AMSLLPQEVQQQGIRVQKTSSSFLMVAAFISSDGSMNNDDLADYVVSNIKEPLSRLDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP++L ++  T   +       N        G     +      
Sbjct: 174 DITLFGSQYSM-RVWLDPNKLNRVQMTPGDVQAAIKAQNAQVAFGKLGGTPSVEDQQFTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +S +              +    +        +        +           
Sbjct: 233 TIMGQTRLSTVE-------------QFNDILLRVNQDGSKVRLKDVARVELAGESYDADA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +   T E        L          +           S   
Sbjct: 280 LYNGQSTAAVAIKLATGANALDTAEKVRAKLNELSDYFPANMEIVYPYDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+++ +   +  L+   ++ + ++ T  +++  G ++   ++ G+V
Sbjct: 340 VVQTLIEAIFLVFCVMYLFLQNFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + ++ S   +     ++    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERLMSEEDLSPLEATRKSMTQITGALVGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F++T+  ++++S+  A+ +  A+   +           +       +   
Sbjct: 460 GGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCATLLKPMKHGEFGAKRGFFGWFNRAF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +     +   + +    + ++ ++  +         + +G I   V    
Sbjct: 520 DAGTNRYQSGVRKVIKQGVRYSLIYGAMLAVLAVLFMRMPTSFLPEEDQGVIMSMVQLPV 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     L  ++   +  +  + +    V      G           +K       P
Sbjct: 580 GATKQRTEVVLADMRDYFLKNEKENVDSVLTVSGFSFAGSGQNAGMAFIKLKDWSERKSP 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
             +              +    +  
Sbjct: 640 DRSANAIIGRAMGYLFSIKEAQVFA 664



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V     + +  D            +        +++     +     ++++  
Sbjct: 258 SKVRLKDVARVELAGESYDADALYNGQSTAAVAIKLATGANALDTAEKVRAKLNELSDYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P +             +  I + +  +I +   +   +++  + +   L     + + + 
Sbjct: 318 PANMEIVYPYDTTPFVKISIEEVVQTLIEAIFLVFCVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     +    +S  +   KS+
Sbjct: 378 GTFGVMAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERLMSEEDLSPLEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GGS       F++ +   +V++   ++ +   +   
Sbjct: 436 TQITGALVGIALVLSAVFVPMAFFGGSTGAIYRQFSLTIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 85/266 (31%), Gaps = 9/266 (3%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                   + ++ +      V  +    +            G    + ++G     +  + 
Sbjct: 770  YMQADAPFRMNPEDLKLWYVRNSAGQMVPFSAFASTEWSFGSPRLERYNGVPAMEIVGEA 829

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
             PG S            K                  +   +      + +++  + +   
Sbjct: 830  APGKSTGDAMAAIEQMVKQLPEGVGIEWTGLSFQERQAGSQAPALYAISLLVVFLCLA-- 887

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +   W      +  + L +   +    L G+E ++     +LT IG S  + +++ + 
Sbjct: 888  -ALYESWSIPFSVMLVVPLGVLGAIVAATLRGLENDVYFQVGLLTTIGLSAKNAILIVEF 946

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             ++   LY   +   + + ++    L   + TS+A  + VLP+ +    G S   +    
Sbjct: 947  AKE---LYDKGMGLGEAVVEAARLRLRPILMTSLAFILGVLPLVISSGAGASSRNAIGTG 1003

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDW 826
            +  G++ A   +IF      + +  +
Sbjct: 1004 VMGGMISATVLAIFFVPLFFVLVMRY 1029


>gi|146313339|ref|YP_001178413.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Enterobacter
           sp. 638]
 gi|145320215|gb|ABP62362.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter sp. 638]
          Length = 1036

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/683 (10%), Positives = 188/683 (27%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G L  L     Q  + ++P+  P                     
Sbjct: 7   QRPIFAWVLAIILMIAGGLAIL-----QLPVAQYPTIAPPAV---------AVTATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     N  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGNVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D       + S  +     D I  +   
Sbjct: 113 LAMPLLPQEVQQQGIGVEKSSSSFLLVAGFVSDNKTLTQDDISDYVASNVKDAISRTSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + NN       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDSNALNKFQLTPLDVINQLKIQNNQIAAGQLGGTPSIPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KTPEEFGNVTLKVNQDGSMVHLKDVARIELGGENYNMV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                +   T        A L++        +           S  
Sbjct: 279 TKINGQAATGLGIKLATGANALDTAAAIKTKLAELQSFFPQGMRVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++   A+LS  G ++   ++ G+
Sbjct: 339 EVIKTLFEAIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGAFAILSAFGFSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +     +++     +      +    +    +      + + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMVEDKLPPKEATQKSMEQIQGALVGIAMVLSAVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F++T+  ++ +S+  A+ +  A+   +++    +         +F    
Sbjct: 459 FGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCATLLKPASEEHHAKGGFFGWFNTLF 518

Query: 537 CIAIQFM---------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
             ++            +   + V   ++    ++  L         + +G     V    
Sbjct: 519 DKSVDHYSNSVSGILRKTGRYLVVYVLIVGGMAVLFLRLPTSFLPEEDQGVFMTMVQLPA 578

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +  +  L+ +Q   ++ +  + E  F V      G           +K        
Sbjct: 579 GATQTRTQQILDQVQQYYLTQEKANVESVFTVNGFSFSGQGQNSGIAFVSLKPWEDRPGE 638

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
            + ++       K   ++    +
Sbjct: 639 KNGVEAIVGRATKAFSQIKDGLV 661



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 82/243 (33%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  ++  +        L        +++     ++    ++    
Sbjct: 258 SMVHLKDVARIELGGENYNMVTKINGQAATGLGIKLATGANALDTAAAIKTKLAELQSFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + I  +  + + + + +++  +     L     + + + 
Sbjct: 318 PQGMRVVYPYDTTPFVKISIHEVIKTLFEAIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                 + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GAFAILSAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEDKLPPKEATQKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  +M      +PMA +GGS       F++ +   + ++   ++ +   +   
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 69/193 (35%), Gaps = 7/193 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G+S       E +         L +    +  G      L       +  IS I + + +
Sbjct: 827  GESAPGKSTGEAMVMMERLANKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIIVFLCL 886

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L   +L G+  ++     +LT IG S  + +++ + 
Sbjct: 887  AALYESWSIPFSVMLVVPLGVIGALLGASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEF 946

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  M+         +   ++    L   + TS+A  + V+P+ +    G     +    
Sbjct: 947  AKDLMEKEGKG--VVEATLEASRMRLRPILMTSLAFILGVMPLVISNGAGSGAQNAVGTG 1004

Query: 801  MAFGIVVAASSSI 813
            +  G++ A   +I
Sbjct: 1005 VMGGMLSATLLAI 1017


>gi|145224397|ref|YP_001135075.1| preprotein translocase subunit SecF [Mycobacterium gilvum PYR-GCK]
 gi|315444729|ref|YP_004077608.1| protein translocase subunit secF [Mycobacterium sp. Spyr1]
 gi|145216883|gb|ABP46287.1| protein translocase subunit secF [Mycobacterium gilvum PYR-GCK]
 gi|315263032|gb|ADT99773.1| protein translocase subunit secF [Mycobacterium sp. Spyr1]
          Length = 422

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 139/320 (43%), Gaps = 13/320 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     A + +  R     +S L    SI  +   G  +GIDF+GG ++    
Sbjct: 28  KHGFFVRLYTGTGAFEVVGKRKLWYTVSALIVAVSIGAMILRGFTFGIDFEGGTKVSFPR 87

Query: 586 NRPVDLSVVRSNL--ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +     +     +  +++     +        +   +++ +   +     +   +     
Sbjct: 88  SDTQATTQQVETVFNDTIGSPPEAVVIVGSGDSATFQIRSETLTNDEIIELRTALFDAFQ 147

Query: 644 EIVPLSTIQ----NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + P         +   V      ++ +K ++ +++  I   IYI +R++W  AL A+ T
Sbjct: 148 PVGPDGQPSEQAVSDSAVSETWGGQITQKALIALVVFLILAAIYITVRYEWSMALAALAT 207

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISF 757
           L+ D+  T G +AL G E     V  +LT++G+S+ D V+V+D++ +N     +TT  ++
Sbjct: 208 LVFDLVVTAGVYALVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTDGFEHTTRRTY 267

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSS 812
            +  + ++N+T  RS+ TS+ + + ++ +      + G   +   A+    G++V   SS
Sbjct: 268 AEQANLAVNQTFMRSINTSVISVLPIIALMVIAVWLLGVGTLMDLALVQLVGVIVGTYSS 327

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           I+ A P+L+ + +      +
Sbjct: 328 IYFATPLLVSLRERTEAVRK 347


>gi|325672612|ref|ZP_08152308.1| protein-export membrane protein SecF [Rhodococcus equi ATCC 33707]
 gi|325556489|gb|EGD26155.1| protein-export membrane protein SecF [Rhodococcus equi ATCC 33707]
          Length = 393

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 134/314 (42%), Gaps = 12/314 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           +      L       + +  R +   ++      S+  +   G + GI+F+GG ++    
Sbjct: 27  HHSWLQRLYTGTGGFEVVGRRKFYYWLTGAIVALSLLSILVRGFSLGIEFEGGTRIQFPT 86

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-----VAQTRVLEMVKK 640
              V    V +        +       G  +                   Q  + +  + 
Sbjct: 87  PEGVTTEQVETVYSDTLGQEPVSVQTVGSGSSSSVEIRSEALDAGQVNELQNALYDEFQP 146

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K +         +   V      ++ +K ++ +++  + + IYI +RF+   A+ AI +L
Sbjct: 147 KDSNGNTSKNAISVADVSETWGGQITKKALIALVVFLVIVSIYIAVRFERDMAIAAIVSL 206

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFR 758
             D+  T G ++L G E     V  +LT++G+S+ D VVV+D++ +N +  L+    ++ 
Sbjct: 207 FFDMIVTAGVYSLIGFEVTPATVIGLLTILGFSLYDTVVVFDKVEENTRGILHLNRRTYA 266

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSI 813
           +  + ++N+TL RS+ T++ + + V+ +      + G   +   A+    GI+V A SSI
Sbjct: 267 EQANLAVNQTLMRSINTTVISILPVIALMVVAVWLLGIGTLKDLALVQLVGIIVGAYSSI 326

Query: 814 FIAAPILLFIYDWR 827
           F A P+L+ I +  
Sbjct: 327 FTATPMLVSIKERW 340


>gi|302335521|ref|YP_003800728.1| protein-export membrane protein SecF [Olsenella uli DSM 7084]
 gi|301319361|gb|ADK67848.1| protein-export membrane protein SecF [Olsenella uli DSM 7084]
          Length = 325

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 135/304 (44%), Gaps = 5/304 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                   I  +  R   + IS +  + +I  L   GL +GI+FKGG ++       + +
Sbjct: 1   MRSHFSREIPIIYHRRQFLAISGMLVVLAIVGLVARGLVFGIEFKGGTEIDFHDTGSISI 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +RS L S    D + Q    E      ++    D     +        +         
Sbjct: 61  GQMRSALVSAGEEDPTVQTSVTEGAQGFLVRSDTIDPKTANQHAAAAASSLGLGGESY-- 118

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +GP    ++ R   +   ++ + ++ Y+ +R+++  ++ A+  L+ D+  TLG +
Sbjct: 119 -TVTTIGPDWGADVTRSSAMAFGVAILLIIAYVSVRYEFKMSITAVIALLHDLLITLGVY 177

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINETL 769
           A          VAA+LT++GYS+ D VV ++RM +N K        ++  + + SINE  
Sbjct: 178 AWTQTAITPNVVAALLTIMGYSLYDTVVEFNRMNENAKQLKDGVHRTYYQICNFSINEVF 237

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ T++ + + V+ M + GG+ +  FA  M  G ++   SS  +A+P+L        +
Sbjct: 238 VRTINTTITSLVPVVAMLLLGGATLKDFAFAMLVGELLGTWSSFAVASPLLAIWKTREKR 297

Query: 830 NARI 833
            AR+
Sbjct: 298 WARL 301


>gi|323162658|gb|EFZ48501.1| inner membrane protein [Escherichia coli E128010]
          Length = 768

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/647 (11%), Positives = 172/647 (26%), Gaps = 48/647 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
              +    G   R F+IT+  S+L+S+F A+S+  A+   I                  N
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATILKAAPEGGHKPNALFARFN 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            L          + + +        +  L     + +LF       +  +        A 
Sbjct: 516 TLFEKSTQHYTDSTRSLLRCTGRYMVVYLLICAGMAVLFLCTPTSFLPEEDQGVFMTTAQ 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            P   ++V +     Q+ D            +  +         Q  
Sbjct: 576 LPSGATMVNTTKVLQQVTDYYLTKEKDNVQSVFTVGGFGFSGQGQNN 622



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488


>gi|300705586|ref|YP_003747189.1| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum CFBP2957]
 gi|299073250|emb|CBJ44609.1| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum CFBP2957]
          Length = 1049

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 75/686 (10%), Positives = 184/686 (26%), Gaps = 49/686 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G +        Q  + ++P+  P               +++    
Sbjct: 8   RPVFAWVLALFIIVAGAISI-----TQLPIAQYPTIAPP-------------SILITATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN--KITLSFADSRFKENIADKVT 116
                  L       +   +             +       IT++F            V 
Sbjct: 50  PGASAKTLDDAVTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V ++L     +  +     +   ++ +           +     I R  +++I  
Sbjct: 110 NRLKRVEARLPSSVTQQGVQVDKTRSNFLLFATLISKDGKMDPVALGDYISRNVLNEIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q +        +    DP++L     T   +       N        G       
Sbjct: 170 VPGVGQAVLFGT-ERAMRIWIDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +   V + G             T +    +   +    +        +      
Sbjct: 229 QP----IAATVVVEGQ---------MTTTEQFGNIVLVSKPDGSQVRIKDVARLELGGQT 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +    I+          +   T +        L           V         
Sbjct: 276 YATSARINGQPISAIGVQLSPTGNALGTAKAVKAKLDELSKYFPAGVEYKVPYDTSKFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   ++ L+    + ++++   A ++ LG ++ + +
Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLVFLQNIRYTLIPSIVVPISLLGAFATMNALGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +      +      +    I    +  +   +
Sbjct: 396 MFGLVLAIGILVDDAIVVVENVERIMSEEGLPPREATRKAMGQITGAIIGITLVLMAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDI 525
            + FF G      R F+++M  SI  S   A+++  A+   +         ++K      
Sbjct: 456 PMAFFSGSVGAIYRQFSLSMVASIFFSALMALTLTPALCSTLLKPIEKGSHHEKKGFFGW 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        ++     +     + I  ++ +  +L    L             +  
Sbjct: 516 FNRMFTSTTNRYQSLVERMLKKTFRYMVIYGALIAAVVLLFVRLPSSFLPNEDQGYIITN 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +    +     L+ ++  +  +Q+    +N +    +    +     ++    K  ++ 
Sbjct: 576 IQLPPAASANRTLDVIKQVERYYQHEKAVENIVAVQGFSFSGNGPNAALVFTTLKDWSQR 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIV 671
               T               IR  IV
Sbjct: 636 GADQTADAVAGRAFGALFGGIRDAIV 661



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 87/250 (34%), Gaps = 6/250 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            F   + +       V +  V       Q    S +      + +       G+++   +
Sbjct: 246 QFGNIVLVSKPDGSQVRIKDVARLELGGQTYATSARINGQPISAIGVQLSPTGNALGTAK 305

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
            ++    ++++  P            K  +  I + +  +  +   + + + +  +   +
Sbjct: 306 AVKAKLDELSKYFPAGVEYKVPYDTSKFVQISIEEVVKTLFEAMALVFLVMLVFLQNIRY 365

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +          G   N+  +  ++  IG  V+D +VV + +     +  
Sbjct: 366 TLIPSIVVPISLLGAFATMNALGFSINVLTMFGLVLAIGILVDDAIVVVENV--ERIMSE 423

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +  R+   K++ +  G  +  ++      +PMA + GSV      F++ M   I  +A
Sbjct: 424 EGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVASIFFSA 483

Query: 810 SSSIFIAAPI 819
             ++ +   +
Sbjct: 484 LMALTLTPAL 493



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/258 (10%), Positives = 81/258 (31%), Gaps = 9/258 (3%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    + +         V  S            Q      
Sbjct: 759  FPNYGRQQRVIVQADRINRMQPEDIMNLFVRNTQGSMVPMSAFAKGHWIVGPVQLVRYNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +R+        +    ++ +++  +++      + T     + S       +  +  
Sbjct: 819  YPSIRISGDAATGASTGEAMDEMERLASKLPAGIGFEWTGQSLQEKSSGSQAPALYAL-- 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            S +A+ + +   ++ W      I  + L +   L    L  +  ++     ++ ++G S 
Sbjct: 877  SLLAVFLVLAALYESWSIPAAVILVVPLGVLGALLGVTLRFMPDDVYFKVGLIAVVGLSA 936

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
             + +++ +  +    L        +   ++++      + TS A  + VLP+A+  G+  
Sbjct: 937  KNAILIIEFAKD---LQAQGKGLIEATLEAVHLRFRPIIMTSFAFILGVLPLAIATGASS 993

Query: 795  ---GSFAIPMAFGIVVAA 809
                +    +  G++ A 
Sbjct: 994  ASQRAIGTGVMGGMITAT 1011


>gi|312139498|ref|YP_004006834.1| preprotein translocase subunit secf [Rhodococcus equi 103S]
 gi|311888837|emb|CBH48149.1| putative preprotein translocase subunit SecF [Rhodococcus equi
           103S]
          Length = 391

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 134/314 (42%), Gaps = 12/314 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           +      L       + +  R +   ++      S+  +   G + GI+F+GG ++    
Sbjct: 25  HHSWLQRLYTGTGGFEVVGRRKFYYWLTGAIVALSLLSILVRGFSLGIEFEGGTRIQFPT 84

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-----VAQTRVLEMVKK 640
              V    V +        +       G  +                   Q  + +  + 
Sbjct: 85  PEGVTTEQVETVYSDTLGQEPVSVQTVGSGSSSSVEIRSEALDAGQVNELQNALYDEFQP 144

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K +         +   V      ++ +K ++ +++  + + IYI +RF+   A+ AI +L
Sbjct: 145 KDSNGNTSKNAISVADVSETWGGQITKKALIALVVFLVIVSIYIAVRFERDMAIAAIVSL 204

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFR 758
             D+  T G ++L G E     V  +LT++G+S+ D VVV+D++ +N +  L+    ++ 
Sbjct: 205 FFDMIVTAGVYSLIGFEVTPATVIGLLTILGFSLYDTVVVFDKVEENTRGILHLNRRTYA 264

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSI 813
           +  + ++N+TL RS+ T++ + + V+ +      + G   +   A+    GI+V A SSI
Sbjct: 265 EQANLAVNQTLMRSINTTVISILPVIALMVVAVWLLGIGTLKDLALVQLVGIIVGAYSSI 324

Query: 814 FIAAPILLFIYDWR 827
           F A P+L+ I +  
Sbjct: 325 FTATPMLVSIKERW 338


>gi|283954658|ref|ZP_06372176.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793850|gb|EFC32601.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 526

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 289/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++ ++   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKINYRLIIFIVVFIFGVAFSLPSFLQSE---------RGAKINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 52  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIAKVENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + V        I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------KGINVQNENMHYKISFTPEEVKNIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTVAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMNQASTMSDAEAAS 218

Query: 232 ------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++ PV++ + +  G+++F + 
Sbjct: 219 YGLILVPDFRNPNLKYPLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD ++ +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKIYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRTSIEQGYKNAMSAIVD 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 459 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRK 526



 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ +++++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGV-AGIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   V
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRTSIEQGYKNAMSAIV 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      K+ 
Sbjct: 458 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSN 515


>gi|37588895|gb|AAQ94110.1| inner membrane protein [Burkholderia pseudomallei]
          Length = 1066

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 157/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       IT++FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVALHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITEATLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        + A      +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNSSRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     +++   
Sbjct: 258 SQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 135/519 (26%), Gaps = 38/519 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLTQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSDQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  L++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLRGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVM 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             L      G  +       +   ++ + F AI ++    
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|77465321|ref|YP_354824.1| cation efflux transporter [Rhodobacter sphaeroides 2.4.1]
 gi|77389739|gb|ABA80923.1| Cation/multidrug efflux pump, RND family [Rhodobacter sphaeroides
           2.4.1]
          Length = 1039

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/622 (11%), Positives = 173/622 (27%), Gaps = 37/622 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L  L     +  + ++PS  P   +                  
Sbjct: 8   RPVFAWVIAIVIMALGVLSIL-----RLPVSQYPSIAPPAVV---------IGATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +   + L        S       +ITL+F      +    +V   L  
Sbjct: 54  AETVTDTVTQVIEREMTGLDGLRYISSSSTSTGVAQITLTFELGTDPDIAQVQVQNKLSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L     +  +         +++     D     A E +  +    ++ I       
Sbjct: 114 AQALLPQAVVRQGVTVRKSSAGFLMVIAMTSDNGAYSASELADYMSSNMVESISRLPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     + + ++      N       FG R   +    Q 
Sbjct: 174 SVQVFGSQ-HAMRIWLDPNKLNAYDLSPSDVTAAVSAQNAQISAGSFGARPAPEGQQLQA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      +   E             +           
Sbjct: 233 TITAQSLL-------------QTPEDFEQIVLRAETDGGLALLRDVARVELGAQSYEIDG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T +        L A         V          S   
Sbjct: 280 RYNRSPASGMAIQLASGANALDTADVVRAKVDELAAFFPEGMTYEVPYDTTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  L+   ++ + ++ T  +++ LG ++   ++  +V
Sbjct: 340 VVKTLIEAIVLVVLVMLLFLQNIRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     +       +           +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFL 533
           G   G   + F+IT+  ++ +S+  A+++  A+   I++     +               
Sbjct: 460 GGSTGEIYKQFSITIVSAMALSVLVALTLTPALCATILKRGHHSARRGPVGWFNRGFDAT 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 +     R   + + +   I +  +                 + +   +    + 
Sbjct: 520 TRGYGGLVGRVVRRPVLMMVLFGVIVAGMVTLFQRTPTAFLPDEDQGVLITLIQTPSGAT 579

Query: 594 VRSNLESLQIGDISFQNFDGEK 615
               L +++  +  +   +GE 
Sbjct: 580 AERTLAAIKEVENYWLEKEGEN 601



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 54/140 (38%), Gaps = 5/140 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G  A  G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 IRATLIPTLAVPVVLLGTFGVMAALGFSINTLTMLAMVLAIGLLVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           +    +       KS++E  G  V  +M      +PMA +G   G +   F+I +   + 
Sbjct: 420 MEQEGLDPVAATRKSMDEISGALVAIAMVLSAVFVPMAFFGGSTGEIYKQFSITIVSAMA 479

Query: 807 VAASSSIFIAAPILLFIYDW 826
           ++   ++ +   +   I   
Sbjct: 480 LSVLVALTLTPALCATILKR 499



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 72/252 (28%), Gaps = 15/252 (5%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   D     ++       V LS             ++  N         +      
Sbjct: 772  PWARTDPDDLDLWRIPNKDGEFVALSTFADQTWFYGPQQVARYNAVRSMEIQGQPVPGIS 831

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   +  +  +         T  + E         L+       ++S  A+ + +  
Sbjct: 832  SGEAMAEMERLAAQLPPGFALEWTGLSLEEREAGDQASLL------FLLSVGAVFLCLAA 885

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIGYSVNDKVVVYDRM 744
             ++ W   +  +  + + I   L   A  G + N       +LT++G +  + +++ +  
Sbjct: 886  LYESWSVPIAVLLAMPVGILGAL-LGAWAGHQANGVYFQVGLLTVVGLTGKNGIMIVEFA 944

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
            R             + I  +        + TS+A  + V+P+ +    G     +    +
Sbjct: 945  R---SRLAQGEPLLEAIRHAAVLRFRPILMTSLAFSLGVVPLVLSTGAGAGARRAIGDGI 1001

Query: 802  AFGIVVAASSSI 813
              G +      I
Sbjct: 1002 LGGTITGTLLGI 1013


>gi|115352706|ref|YP_774545.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           ambifaria AMMD]
 gi|115282694|gb|ABI88211.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria AMMD]
          Length = 1066

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPISQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPVLPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANFVASHVKDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+RL     T   +S      N    G   G    +   
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTRLTNYGLTPVDVSSAIAAQNVQIAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        I       
Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVSKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNNSREKYHVGVHHVIKRSGRWLIIY 544



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++    
Sbjct: 258 SQVRLKDVSKIELGGENYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 80/219 (36%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K   +    +         +   +    
Sbjct: 816  ERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGSQAPVL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    + G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVVGALLAATMRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/522 (11%), Positives = 136/522 (26%), Gaps = 38/522 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   + + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLKDEKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSQRQHANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  +++      I  + +    D  ++         +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDAMVIPFNPPSIPELGTAAGFDFELTDNAGLGHNALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLQGVRPNGLNDTPQYKVDIDREKANALGVTAEAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDLNVWYVRNGSGGMVPFGAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      V    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L V+  L   ++ G    +  
Sbjct: 871  ----QAPVLYAISILVVFLCLAALYESWSIPFSVIMVVPLGVVGALLAATMRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVM 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             L      G  +       +   ++ + F AI ++    + I
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028


>gi|68171328|ref|ZP_00544726.1| SecD/SecF/SecDF export membrane protein [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88658165|ref|YP_506924.1| preprotein translocase subunit SecF [Ehrlichia chaffeensis str.
           Arkansas]
 gi|67999255|gb|EAM85907.1| SecD/SecF/SecDF export membrane protein [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599622|gb|ABD45091.1| protein-export membrane protein SecF [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 293

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 96/281 (34%), Positives = 156/281 (55%), Gaps = 3/281 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           I I F + R   +  S +  + SI L+   G+ +G DF GGI + + A++ VD+  V   
Sbjct: 7   INIDFSKYRICALSCSGVLMLISILLVLLKGICFGTDFAGGIIIELRADQ-VDVKSVNLK 65

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+       S Q F    +  + ++++      Q+  +E +K  + +I+   T    + V
Sbjct: 66  LQENGFVGFSVQGFK-NNDRELMVRFKNEKDSDQSDTVEKIKGVLNKILGEVTYLKIDYV 124

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  + I +G+  +I S + M +Y+W+RF+W FALG +  LI D+  TLG  +L  IE
Sbjct: 125 GPQVGYKQIFEGLCAIIFSLLGMFLYLWVRFQWRFALGGVLALIHDVVLTLGLVSLCNIE 184

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           FNL++ AA+LT+IGYSVND VV+YDR+R+ +          D+I+ SIN TL R++ TS 
Sbjct: 185 FNLSSTAAILTVIGYSVNDSVVIYDRIRE-LLKKKLQKKLSDVINISINATLSRTILTSG 243

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              ++ +P+ +     +   +I + FGI V   SSIFIA  
Sbjct: 244 TTMLASVPLMLLCQGTVRELSIIVFFGIAVGTYSSIFIATT 284


>gi|323493906|ref|ZP_08099023.1| putative acriflavin resistance protein [Vibrio brasiliensis LMG
           20546]
 gi|323311847|gb|EGA64994.1| putative acriflavin resistance protein [Vibrio brasiliensis LMG
           20546]
          Length = 1050

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/692 (11%), Positives = 187/692 (27%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPKISPP-------------SVSVTAF 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ +       N        G     ++
Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPEKMANLNLTTSDVYSALAEQNVQVAAGRVGAAPYSNA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +  +              +    +   +      +      +      
Sbjct: 230 QEVQFNLVTKGRLESVD-------------EFENVVLRAQNDGSSIYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGSGKFRGQDASIVALSLQSDANALESGQAVMDLLEQLSVNFPEGVAYETSYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++ + G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQMTGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSMSPRKATLIAMREVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           I   +L    G   R FA+T+ +S++IS   A+++  A+   +         +   + + 
Sbjct: 457 IPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTSRWFTAFNA 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             +A        +  +  S     T       + KG + + V  
Sbjct: 517 GLERVTARYGQIAGFLVKKALLLVTFFIVAVAAVSFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS      E L          DG              +     +   +    T  
Sbjct: 577 PDAASLSRTEEVTEQLIDIVEQEPGVDGITVANGYAFMTGAAASNGASLFIKLHDWETRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                     I      R  +      ++ + 
Sbjct: 637 GFDGDHSANAIAQRINGRAAME-LPQAIVFAM 667



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 78/197 (39%), Gaps = 7/197 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A   +LE +     E V   T  +T +   +  + +++  I  +++      +++ 
Sbjct: 303 ESGQAVMDLLEQLSVNFPEGVAYETSYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLG 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L  +  + + +  T     + G   N   +  ++  IG  V+D ++V + + 
Sbjct: 363 ---SARATLIPVVAIPVSLIGTFAIMQMTGFTINTVTLFGLILAIGIVVDDAILVIENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
                   S+S R     ++ E  G  + +++      +P+A+  G        FA+ + 
Sbjct: 419 DTTMAKDPSMSPRKATLIAMREVTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTIC 478

Query: 803 FGIVVAASSSIFIAAPI 819
             +V+++ +++ ++  +
Sbjct: 479 ISVVISSINALTLSPAL 495



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 55/447 (12%), Positives = 118/447 (26%), Gaps = 26/447 (5%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            L+      P + GI +  G A  +    +       + +     +   G   A +     
Sbjct: 592  LIDIVEQEPGVDGITVANGYAFMTGAAASNGASLFIKLHDWETRNGFDGDHSANAIAQRI 651

Query: 467  NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
            N      +   ++F  G  AV G     G   ++      S   +   M   I    K  
Sbjct: 652  NGRAAMELPQAIVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMGQMIEEANKQP 711

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             I     +    +P                            L +  +N    F    ++
Sbjct: 712  EIGFTFSTFRANVPHYYVDIDREKVQQLGIPLSSVFQTLQGNLGSLYVNDFTMFGKNFRV 771

Query: 582  GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + A+              V  +       S  +        D    + +          
Sbjct: 772  TIQADGQHRSGMEDLERFHVRSASGEMIPLSTLVSYEQIFEPDVAWRYNMYRSAIIQGQP 831

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
            A           +  +      Q  +     ++ + +  G   +   +   + IY   + 
Sbjct: 832  APGYSSGDAIAAMERVAADVLPQGYQYEWTGMAYQEVLAGNQAIFAFALALIFIYLFMVA 891

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   L  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892  QYESWSIPLAIILVVPIATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--SFAIPMA 802
              ++         +   K           TS +  + + P+    G   I   S  I + 
Sbjct: 952  --VEREEKDRPIDEAAVKGGKLRFRAVNMTSWSFILGIFPLIFASGAGHISQNSLGISLI 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++    +  F+       +   R K
Sbjct: 1010 GGLLCVLLAGTFLIPGFYALVQRRREK 1036


>gi|237714928|ref|ZP_04545409.1| multidrug efflux membrane fusion protein [Bacteroides sp. D1]
 gi|262406804|ref|ZP_06083353.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294647225|ref|ZP_06724824.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CC 2a]
 gi|294809163|ref|ZP_06767879.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229445253|gb|EEO51044.1| multidrug efflux membrane fusion protein [Bacteroides sp. D1]
 gi|262355507|gb|EEZ04598.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292637512|gb|EFF55931.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CC 2a]
 gi|294443557|gb|EFG12308.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 1010

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 89/687 (12%), Positives = 193/687 (28%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +       + I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMAGYGITPVDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T     D+   E   R              A +    
Sbjct: 233 L--------------------MHTADEFNDLIVKEENNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K  +   +   G    +  +  + IT +     + F  
Sbjct: 393 LSVGLVVDDAIVMTENIYIRIEKGMTPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ +S        FF   + +
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQSWFYAKTEPFFEGMNRL 512

Query: 539 AIQ----FMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+  R+  +  + +                  ++ +  I +       V    
Sbjct: 513 YSRSLAAFLSKRWIALPFTFITICLIGILWNAVPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISF---------QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S          +   G  N  + L+     +  Q  V E + K + +
Sbjct: 573 IRDYTEDINQLVDSILPDAEAVTARVSSGSGNVRITLKDMNERNYTQMDVAEKISKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +    +         +  + ++
Sbjct: 633 KTMARSFVQQQSSFGGRRGSMPVQYVL 659



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V + +++   ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASINEVKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ A++  +G  V+D +V+ + +          ++ ++   +   E     + 
Sbjct: 380 GFSINVLSMLAIVLSVGLVVDDAIVMTENI---YIRIEKGMTPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G        F+I ++  +++++ +++     +   +   R K +
Sbjct: 437 TTITLVAVFFPIVFMDGMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            VV+   +++I   I  +I   R K 
Sbjct: 983  VVSTLLTMYIVPAIYSYISTNRIKK 1007


>gi|167718324|ref|ZP_02401560.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           pseudomallei DM98]
          Length = 1066

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 157/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       IT++FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITEATLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        + A      +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T  ++S++G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFVIMSMVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +     S+    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKAMSQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNSSRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     +++   
Sbjct: 258 SQVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFVIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 SQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 135/519 (26%), Gaps = 38/519 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLTQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSDQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  L++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLRGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVM 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             L      G  +       +   ++ + F AI ++    
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|54302180|ref|YP_132173.1| preprotein translocase subunit SecD [Photobacterium profundum SS9]
 gi|46915601|emb|CAG22373.1| Putative membrane protein SecD [Photobacterium profundum SS9]
          Length = 611

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 160/517 (30%), Positives = 268/517 (51%), Gaps = 34/517 (6%)

Query: 25  NFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL 81
           + L  ++    P  +       I LGLDLRGG   +L+VD D          +DELR   
Sbjct: 111 STLTLALEPAAPLWLQNMGFEPIKLGLDLRGGVQFLLDVDIDQVYKAQGASLADELRQLF 170

Query: 82  KKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           +KEGI    + Q   + +T+   +S     +   V        +                
Sbjct: 171 RKEGIRGARVEQSDVDHLTVKVNNSEANSAVRKFVKTQYPQWQA-----------TNGDG 219

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
             + + +      ++ +  ++Q+++ +R RI+++GI+E+ +QR G +RI I+LPG QDP+
Sbjct: 220 NSVRLAMKDAEKTELRNLTVQQNLQTMRSRIEELGITEALVQRQGENRIRIELPGVQDPA 279

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
             + ++G TA ++F+ V               L++  G    V     + G H+  A A+
Sbjct: 280 AAKNVIGATASLAFYAVKEQ-----GTGSTMELKNKQGQPVRVGRNPILGGDHIVDARAS 334

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------VLTAPVI 308
           F        V+I+ D  G +   + +RDN+GKP+A                   + +   
Sbjct: 335 FGEMGM-AEVNITLDSSGGKIMSDFSRDNVGKPMATSYSEYGRDSEGKTTQTNEIISVAT 393

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q+    + +I+G  +++ A  LA +LRAGSL   + IVEER +G  LG+++I  G  A+
Sbjct: 394 IQSQLGMRFRITGTGSMDEAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIENGFAAL 453

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
             GL + +LFM V Y + G VA+ ++  N+I+   LL+L+  A LTLP IAG+VL +G+A
Sbjct: 454 GLGLGVTLLFMAVWYRRLGWVANVALIANMIMLFGLLALIPGAVLTLPGIAGLVLTVGMA 513

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ERI+++ ++ +S+  ++D GFS A  TIFD+N T +I  VVL+  G G ++G
Sbjct: 514 VDTNVLIFERIKDKLKEGRSMAQAIDRGFSSAIGTIFDANFTTMITAVVLYAIGNGPIQG 573

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           FA+T+GL +L SMFT I   RA++  +      ++I 
Sbjct: 574 FALTLGLGLLTSMFTGIFASRAIINLVWGRDSRRNIR 610



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 93/261 (35%), Gaps = 5/261 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  V        S    + E          +    ++ L       G     
Sbjct: 352 GKIMSDFSRDNVGKPMATSYSEYGRDSEGKTTQTNEIISVATIQSQLGMRFRITGTGSMD 411

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I  G   + +     L+++ + ++  
Sbjct: 412 EAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIENGFAALGLGLGVTLLFMAVWYR-R 470

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 471 LGWVANVALIANMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 530

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                S    ID+  +  +G     +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 531 ---GRSMAQAIDRGFSSAIGTIFDANFTTMITAVVLYAIGNGPIQGFALTLGLGLLTSMF 587

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
           + IF +  I+  ++   ++  
Sbjct: 588 TGIFASRAIINLVWGRDSRRN 608


>gi|21220015|ref|NP_625794.1| preprotein translocase subunit SecF [Streptomyces coelicolor A3(2)]
 gi|256788886|ref|ZP_05527317.1| preprotein translocase subunit SecF [Streptomyces lividans TK24]
 gi|289772773|ref|ZP_06532151.1| secF [Streptomyces lividans TK24]
 gi|2498901|sp|Q53956|SECF_STRCO RecName: Full=Protein-export membrane protein secF
 gi|758289|emb|CAA59955.1| secF [Streptomyces coelicolor A3(2)]
 gi|6822211|emb|CAB70917.1| protein-export membrane protein [Streptomyces coelicolor A3(2)]
 gi|289702972|gb|EFD70401.1| secF [Streptomyces lividans TK24]
          Length = 373

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 149/309 (48%), Gaps = 13/309 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    +   F++ R    GISIL +I +I  L   GL+ GI+F+GG       N    +
Sbjct: 10  RLHHGEVGYDFVKNRKIWYGISILITITAIVGLAVRGLHMGIEFQGGAVFTTPKNMSASV 69

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +   +  E     D   Q         +R+Q    D+    ++ E + K +      +  
Sbjct: 70  AQTETWAEEASGHDAIVQKLGDG---SLRIQIAGTDTQQSDQIKEDLSKNL---DVSAEK 123

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            N ++VGP    ++  K   G+ I  + ++IY+ I F+W  AL A   LI DIT T+G +
Sbjct: 124 INADLVGPSWGDQIANKAWQGLGIFMVLVVIYLAIAFEWRMALAAFVALIHDITITVGIY 183

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           AL G E     V  +LT++GYS+ D VVV+D +++  +  T     ++ ++ ++SIN TL
Sbjct: 184 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTRDITKQTRWTYAEIANRSINSTL 243

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ T++ A + V  +   GG V     +   ++ +  G+   A SSIFIA P++  + 
Sbjct: 244 VRSINTTVVALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLK 303

Query: 825 DWRAKNARI 833
           +   +   +
Sbjct: 304 EAEPQMKAL 312


>gi|269104420|ref|ZP_06157116.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Photobacterium damselae subsp. damselae CIP
           102761]
 gi|268161060|gb|EEZ39557.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Photobacterium damselae subsp. damselae CIP
           102761]
          Length = 1051

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 191/688 (27%), Gaps = 40/688 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +  L        +  +P   P +              +    
Sbjct: 8   QRPKFALVISIILTLAGAIALL-----NLPVAEYPKISPPSV---------SVTAIYSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++             +  + ++F      +     V   + 
Sbjct: 54  SAEVVEEAVADPIEASVNGVENMIYMSSKSANDGSYSLNVTFDIGTDPDMAQVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + SKL  + +   +         +++                  I     DQ+   +  
Sbjct: 114 QIESKLPAEVRMVGVTVKKRSPDLLMVLNFFSPDGKYDDQFLINYINLNVKDQLARVKGI 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP ++  L  TT  +       N        G     ++   Q
Sbjct: 174 SEVNVIGGGEYAMRVWLDPEKMANLKLTTTDIKNALAEQNVQVAAGKVGAPPYNNAQEVQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           + +  K  +                 +    +          +      +          
Sbjct: 234 FNLVTKGRL-------------ESAQEFEQVVVRANPDGSIVYLKDVARVELGKKFYDGN 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +      +    S ++  +   + +    L + L+                     S  
Sbjct: 281 GLFNGQPASIVTLSLQSDANALESGQAVMELLSKLKVNMPEGMEYETSYDTTLFVAESIK 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   ++ G+
Sbjct: 341 GVVKTLIEAILLVIAVTYLFLGSMRATLIPVVAIPVSLIGTFAIMLATGFTINTVTLFGL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVV-- 476
           +L IG+ VD  ILV E +     K+   +   +  +        I  S +  L   +   
Sbjct: 401 ILAIGIVVDDAILVIENVDTNMAKDPTLTPRQATLIAMKEVTGPIITSTLVLLAVFLPVA 460

Query: 477 -LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLS 529
            L    G   R FA+T+ +S++IS   A+++  AM   +         +  K  +     
Sbjct: 461 MLPGITGIMYRQFALTICISVVISSINALTLSPAMCSLVLKQGGDNTARWFKVFNQGLNK 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                         +A        I  +        T       + KG + + V      
Sbjct: 521 ITLKYGAIAGFLVRKATLLAAIFVIAVAAVGFYAKTTSTAFVPQEDKGILLVNVQLPDSA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            LS        L+    +    +G              +     +   +K    E   ++
Sbjct: 581 SLSRTEETTAKLRKIVEAEPAVEGVTIANGYAFLTGAAASNGASMFIKLKPW-DERNNMA 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISA 677
              ++  +  +I+ +        ++ + 
Sbjct: 640 GDNSSFAITNRINAQAAMTLPEAIVFAM 667



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 88/250 (35%), Gaps = 10/250 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             Q+ V AN    +  ++              N          +              + 
Sbjct: 248 FEQVVVRANPDGSIVYLKDVARVELGKKFYDGNGLFNGQPASIVTLSLQSDANALESGQA 307

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRF----KWYF 692
           V + ++++                +  +    I GV+ + I A+L+ I + +        
Sbjct: 308 VMELLSKLKVNMPEGMEYETSYDTTLFVAES-IKGVVKTLIEAILLVIAVTYLFLGSMRA 366

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  +  + + +  T       G   N   +  ++  IG  V+D ++V + +  NM    
Sbjct: 367 TLIPVVAIPVSLIGTFAIMLATGFTINTVTLFGLILAIGIVVDDAILVIENVDTNMAKDP 426

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
           T ++ R     ++ E  G  + +++      LP+A+  G        FA+ +   +V+++
Sbjct: 427 T-LTPRQATLIAMKEVTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISS 485

Query: 810 SSSIFIAAPI 819
            +++ ++  +
Sbjct: 486 INALTLSPAM 495



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 68/212 (32%), Gaps = 10/212 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                  S      +E V  ++                 +       + I    ++ I + 
Sbjct: 831  PAPGYSSGDAIAAMERVAAEVLPQGYQFEWTGMAYQEVQAGN----QAIYAFALALIFIY 886

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            +++  +++ W   L  I  + +    +    A+ GI  NL A   ++ LI  +  + +++
Sbjct: 887  LFMVAQYESWSIPLAIILVVPVATLGSFLALAITGIPLNLYAQIGLVLLIALAAKNAILI 946

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--SF 797
             +  +        ++       +           TS +  + +LP+    G   I   S 
Sbjct: 947  VEFAKNE--REDNNLDIDKAAVRGGKLRFRAVNMTSWSFILGILPLIFASGAGHISQNSL 1004

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             I +  G++    +  F+       +   R K
Sbjct: 1005 GISLTGGLLCVLLAGTFLIPGFFAVVQRKREK 1036


>gi|330819634|ref|YP_004348496.1| Hydrophobe/amphiphile efflux family protein [Burkholderia gladioli
           BSR3]
 gi|327371629|gb|AEA62984.1| Hydrophobe/amphiphile efflux family protein [Burkholderia gladioli
           BSR3]
          Length = 1061

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 67/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVLILLGGVIAMFM-----LPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPIEEQINGVEDMLYMQSQANSDGNVTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   T   +       N      + G          Q 
Sbjct: 176 QVQLWGAGDYAMRVWLDPQKVAERNLTADDVVRAIREQNVQVAAGVIGASPSIPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQTEE-------------EFGNIVVKTAPDGAVTRLRDLGRIDLDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +        L+A         +          S   
Sbjct: 283 LLDNQPAVAMAINQSPGANSLQISDQVRATMKELQADMPKGVEYRIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ +++I T +LL + G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIIGTFSLLLMFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGLSAREATYKAMREVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +          
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHDEKPDWLTRVMNRLFGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGRTPFQAAVEASRLRLRPILMTSIAFIMGVVPLVLSSGAGAEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 100/291 (34%), Gaps = 15/291 (5%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V  +      +   L  +        +    + V       ++ +R              
Sbjct: 221 VIGASPSIPGTPLQLSVNARGRLQTEEEFGNIVVKTAPDGAVTRLRDLGRIDLDASEYGL 280

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
               +    V +           ++ + V+  + E+      +  E        + +R  
Sbjct: 281 RSLLDNQPAVAMAINQSPGANSLQISDQVRATMKELQADMP-KGVEYRIVYDPTQFVRSS 339

Query: 670 IVGVIISAI-AMLIYIW----IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           I  V+ + + A+ + +         W  ++  +  + + I  T     +FG   N  ++ 
Sbjct: 340 IKAVVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIIGTFSLLLMFGYSINALSLF 399

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++  IG  V+D +VV + + +N+    + +S R+   K++ E  G  +       ++V 
Sbjct: 400 GMVLAIGIVVDDAIVVVENVERNI---ESGLSAREATYKAMREVSGPII-AIALTLVAVF 455

Query: 785 PMAVWG----GSVIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKN 830
               +     G     FA+ +A   V++A +S+ ++  +  + +     K 
Sbjct: 456 VPLAFMSGLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHDEKP 506


>gi|153808672|ref|ZP_01961340.1| hypothetical protein BACCAC_02971 [Bacteroides caccae ATCC 43185]
 gi|149128498|gb|EDM19716.1| hypothetical protein BACCAC_02971 [Bacteroides caccae ATCC 43185]
          Length = 1010

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/626 (13%), Positives = 174/626 (27%), Gaps = 44/626 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +       + I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T     D+   E   R              A +    
Sbjct: 233 L--------------------MHTADEFNDLIIKEENNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K  S   +   G    +  +  + IT +     + F  
Sbjct: 393 LSVGLVVDDAIVMTENIYIRIEKGMSPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ +S        FF   + +
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQSWFYAKTEPFFEGMNRL 512

Query: 539 AIQ----FMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+  R+  +  + +                  ++ +  I +       V    
Sbjct: 513 YSRSLAAFLNKRWIALPFTFITICLIGVLWNAIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLV 619
           +R   E +     S           V
Sbjct: 573 IRDYTEDINQLVDSILPDAESVTARV 598



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V + +++   ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASINEVKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ A++  +G  V+D +V+ + +          +S ++   +   E     + 
Sbjct: 380 GFSINVLSMLAIVLSVGLVVDDAIVMTENI---YIRIEKGMSPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G        F+I ++  +++++ +++     +   +   R K +
Sbjct: 437 TTITLVAVFFPIVFMDGMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            VV+   +++I   I  +I   R K 
Sbjct: 983  VVSTLLTMYIVPAIYSYISTNRIKK 1007


>gi|148245035|ref|YP_001219729.1| preprotein translocase SecF subunit [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326862|dbj|BAF62005.1| preprotein translocase SecF subunit [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 304

 Score =  192 bits (487), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 99/293 (33%), Positives = 166/293 (56%), Gaps = 7/293 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           +   I F+  R + +  S+L    SI  L T GL  GIDFKGG  + V   + VDL+ +R
Sbjct: 7   NIPTINFIGKRTYAIIFSVLLISVSIFSLTTKGLKLGIDFKGGTLIEVGYQQSVDLAEIR 66

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L +      + Q F      L+RL+ Q   +   +  +  +      +     I+  E
Sbjct: 67  AILVNANFKRANVQYFGSTNEILIRLEPQLISNAKLSSKIIYL------LGDDVDIRRVE 120

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGPK+  EL   G + ++ + I +LIY+  RF++ F+LG+I  LI D+   LG F+LF 
Sbjct: 121 FVGPKVGEELTNDGGLAMLYALIGILIYVLFRFEYRFSLGSIAALIHDVIIILGVFSLFQ 180

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IEF+LT +AA+L +IGYS+ND +VV+DR+R+N  L     S R +I+ ++N+TL R++ T
Sbjct: 181 IEFDLTVLAAILAVIGYSLNDTIVVFDRIRENFLLTHHVESSR-IINDALNQTLSRTITT 239

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           S+   + +L +   GG +I +F++ +  G+V+   SSI++A+ ++L +   + 
Sbjct: 240 SLTTLLVLLALFFLGGEIIHNFSLALLIGVVIGTYSSIYVASLMILELGITKE 292


>gi|238754259|ref|ZP_04615616.1| Acriflavine resistance protein B [Yersinia ruckeri ATCC 29473]
 gi|238707506|gb|EEP99866.1| Acriflavine resistance protein B [Yersinia ruckeri ATCC 29473]
          Length = 1050

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 176/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIM-----KLPVAQYPTIAPPA-------------ISISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDGLMYMSSSSDSSGSVQLTLTFNSGIDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    D       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVQKSSSSFLMVAGFISDDGTMKQEDIADYVGSNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMDPHKLNNFKLTPVDVITAIKVQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 QLNSSIIAQTRLTSAE-------------EFSKILLKVNTDGSQVRLKDVATVQLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NVIARFNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPASLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGSHGPKTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + V    +     +  L         + +G     V
Sbjct: 516 NRMFDKSTHHYTDSVGNILRSTGRYLVIYLAIVIGMGLLFLRLPSSFLPEEDQGVFLTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +    +  +       F V      G           +K    
Sbjct: 576 QLPAGATQERTQKVLDHVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFISLKNWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +        +    +    +  
Sbjct: 636 RQGAENKVPAIVGRASQAFSRIKDGLVFA 664



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +  ++  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVATVQLGAESYNVIARFNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PASLKVVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMVLSVLVALILTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMDLMQELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 958  G--LVESTLEAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMVTATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|296393864|ref|YP_003658748.1| protein-export membrane protein SecF [Segniliparus rotundus DSM
           44985]
 gi|296181011|gb|ADG97917.1| protein-export membrane protein SecF [Segniliparus rotundus DSM
           44985]
          Length = 367

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 138/319 (43%), Gaps = 12/319 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
            P     L     A + +  R     ++    +  +      G  +GI+F GG  +   +
Sbjct: 34  RPSLFTRLYTGTGAFEIVGRRKLLFRVTAGILLVCLASFAIRGFTFGIEFVGGTSISFPS 93

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKK 640
           +   D   V   +      +       G  +           + AQ       +      
Sbjct: 94  DGKTDNGAVSRVVAEATGQEPVSVQTVGAGSSATVQVRTGDLNNAQTAKVSDALFNAFHP 153

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K  +  P     N   V      ++ ++ ++ + +  +A+ +YI +RF+   A+ AI TL
Sbjct: 154 KGRDGKPSKAAVNVSSVSSSWGGQITKRALIALGVFLVAIGVYIAVRFEVDMAVAAIATL 213

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFR 758
             D+  T G ++L G E     V  +LT++G+S+ D VVV+D++ +N++    TT  ++ 
Sbjct: 214 FFDLVVTAGVYSLVGFEVVPATVIGLLTILGFSLYDTVVVFDKVSENVRGVTKTTRRTYA 273

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSI 813
           +L + ++N+T+ RS+ T++   + VL +      + G   +   A+    G++  A SSI
Sbjct: 274 ELANLAMNQTMMRSINTTVIGVLPVLGLIVVAVLLLGVGTLKDLALVQLVGLISGAYSSI 333

Query: 814 FIAAPILLFIYDWRAKNAR 832
           F+A P+L+ + + R +  +
Sbjct: 334 FVATPLLVTLKERRQEFKK 352


>gi|167722314|ref|ZP_02405550.1| multidrug efflux pump BpeF [Burkholderia pseudomallei DM98]
          Length = 1061

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 154/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLAGMIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPNDSYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   T   +       N      + G          Q 
Sbjct: 176 QVQLWGAGDYAMRVWLDPQKVAQRNLTADDVVRAIREQNVQVAAGVIGASPTLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQNED-------------EFGDIVVKTAPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLAISDEVRKTMAELKQDFPAGVDYRIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL L G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLLFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLTARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGKTPFEAAVEASRLRLRPILMTSIAFIMGVVPLVLSTGAGAEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 89/253 (35%), Gaps = 12/253 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +            + + V+K
Sbjct: 252 IVVKTAPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLAISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 312 TMAELKQDFP-AGVDYRIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLIAVPVSIVGTFSLLLLFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIVVAASSS 812
           + R    K++ E  G  +  ++   A    L       G     FA+ +A   V++A +S
Sbjct: 428 TARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNS 487

Query: 813 IFIAAPILLFIYD 825
           + ++  +   +  
Sbjct: 488 LTLSPALSAILLK 500


>gi|28901045|ref|NP_800700.1| putative acriflavin resistence protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260362474|ref|ZP_05775407.1| RND transporter, HAE1 family [Vibrio parahaemolyticus K5030]
 gi|260879894|ref|ZP_05892249.1| RND transporter, HAE1 family [Vibrio parahaemolyticus AN-5034]
 gi|260894569|ref|ZP_05903065.1| RND transporter, HAE1 family [Vibrio parahaemolyticus Peru-466]
 gi|28809558|dbj|BAC62533.1| putative acriflavin resistance protein [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|308086436|gb|EFO36131.1| RND transporter, HAE1 family [Vibrio parahaemolyticus Peru-466]
 gi|308092160|gb|EFO41855.1| RND transporter, HAE1 family [Vibrio parahaemolyticus AN-5034]
 gi|308113342|gb|EFO50882.1| RND transporter, HAE1 family [Vibrio parahaemolyticus K5030]
          Length = 1050

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/692 (10%), Positives = 186/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPQISPP-------------SVSVTAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           ++   +          +    DP ++  L  TT+ +       N        G     + 
Sbjct: 170 AKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYAALAEQNVQVAAGRVGAAPYNNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANPNGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGNGKFRGQDASIVALSLQSDANALESGKAVMELLERLSENFPEGMTYETSYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLVEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATLLAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +   +L    G   R FA+T+ +S++IS   A+++  A+   +            ++ + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTANWFQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  S     T       + KG + + V  
Sbjct: 517 GLERVTTRYGQVAGFLVKKSLLLVTFFIVAVAAVSFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     +   +    T  
Sbjct: 577 PDSASLSRTEEVTSDLMKMIEEEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWETRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +   +  +I+     +    V+ + 
Sbjct: 637 SLG-GEHSANAIAARINGRAAMELPQAVVFAM 667



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 87/235 (37%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D + +    + + +        +++   + +  + ++++E  P 
Sbjct: 262 VYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESGKAVMELLERLSENFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  ++ + + ++             L  +  + + +  T
Sbjct: 322 GMTYETSYDTTVFVAESIKGVVKTLVEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         +IS R     ++ E
Sbjct: 382 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLLAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      LP+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/394 (12%), Positives = 105/394 (26%), Gaps = 24/394 (6%)

Query: 458  RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFI 514
             A +   +      +   V+F  G  AV G     G   ++      S   +   M   I
Sbjct: 645  NAIAARINGRAAMELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLSMVMGEMI 704

Query: 515  IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
                +   I     +    +P                            L +  +N    
Sbjct: 705  QAANQAPEIAYTFSTFRANVPHYYVDIDREKAQQLGISLSSIFQTLQGNLGSLYVNDFTM 764

Query: 575  FKGGIQLGVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            F    ++ + A+              V  S+      S  +        D    + +   
Sbjct: 765  FGKNFRVTMQADSQHRSGMQDLERFHVRSSMGEMVPLSTLVSYEQVFEPDVAWRYNMYRS 824

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAML 681
                   A           +  +      Q        ++ + +  G   +   +   + 
Sbjct: 825  AIIQGQPAPGYSSGDAIAAMERVAAEVLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIF 884

Query: 682  IY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            IY   +     W   L  I  + +    +     L G   NL A   ++ LI  +  + +
Sbjct: 885  IYLFMVAQYESWSIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAI 944

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIG 795
            ++ +  ++  +     +S  D   K           TS +  + + P+    G+      
Sbjct: 945  LIVEFAKQEREE--KDVSIDDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQN 1002

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            S  + +  G++    +  F+       +   R K
Sbjct: 1003 SLGVSLIGGLLCVLLAGTFLIPGFYALVQRQREK 1036


>gi|110597327|ref|ZP_01385615.1| Hydrophobe/amphiphile efflux-1 HAE1 [Chlorobium ferrooxidans DSM
           13031]
 gi|110341163|gb|EAT59631.1| Hydrophobe/amphiphile efflux-1 HAE1 [Chlorobium ferrooxidans DSM
           13031]
          Length = 1055

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/552 (12%), Positives = 155/552 (28%), Gaps = 34/552 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++           ++++P       I+                 
Sbjct: 8   RPVFAWVISICIMLGGIIAI-----NTLPVEQYPRIAAPT-IN--------ISASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +              N  IT++F      +    +V   LQ 
Sbjct: 54  AEAVENSVTQVIEQALTGIDHLRYFSAGSDSNGNVSITVTFEPEANPDIAQVQVQNKLQS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    ++  +  T      +++     D         +  I  + +D +       
Sbjct: 114 IMSNLPQQVQQQGIRVTKGDTGFLMVVGVYSDDSRVDEYAMNDFINSKLLDPLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP R+     TT ++       N        G            
Sbjct: 174 NIQVFG-QPYSMRIWLDPHRMASFNLTTTEVQAAIAAQNADVSAGQLGGTPSVPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      +        +        +   +       
Sbjct: 233 TITAQSRL-------------KSVSDFEKIMLKVNTDGSQVRLRDVARVELGVQNYDMTT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T        + L+    P    +           S   
Sbjct: 280 RFNGKPAAGMAITLATGANALNTANLVKAKMSSLKPLLPPGVQIVFPFDTSPFVKTSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+F+ +   +  LV   ++ + ++ T  ++S+ G ++   S+  +V
Sbjct: 340 VVHTLIEAVILVFFVMFLFLQNFRATLVPTIAVPVVLLGTFGVMSIFGFSINTLSMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +      +  S   +      +  S  I  + + + +   + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEEERLSPLEATRKSMKQISSALIGIALVLSAVFVPMAFF 459

Query: 480 FG--GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
            G  G   R F+IT+  ++L+S+  A+ +  A+    +   +    +     S  F    
Sbjct: 460 KGSTGTIYRQFSITIVSAMLLSVLVALILTPALCASLLKPVRADGHLYGTGPSGRFFAWF 519

Query: 537 CIAIQFMRARFW 548
                  R R+ 
Sbjct: 520 NGVFNRNRKRYV 531



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 91/240 (37%), Gaps = 12/240 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      +Q  D++ +        +        +++    +++     +  ++
Sbjct: 258 SQVRLRDVARVELGVQNYDMTTRFNGKPAAGMAITLATGANALNTANLVKAKMSSLKPLL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I   +  +I + I +   +++  + +   L     + + + 
Sbjct: 318 PPGVQIVFPFDTSPFVKTSIEGVVHTLIEAVILVFFVMFLFLQNFRATLVPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLID 762
            T G  ++FG   N  ++ A++  IG  V+D +VV    +R+ +  +L     S  +   
Sbjct: 378 GTFGVMSIFGFSINTLSMFAMVLAIGLLVDDAIVVVENVERIMEEERL-----SPLEATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+ +     +  ++      +PMA + GS       F+I +   ++++   ++ +   +
Sbjct: 433 KSMKQISSALIGIALVLSAVFVPMAFFKGSTGTIYRQFSITIVSAMLLSVLVALILTPAL 492



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 91/270 (33%), Gaps = 9/270 (3%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                   Y ++        V  +    +     +      G    + F+G  +  ++   
Sbjct: 774  FMQGDAPYRMNPADVDIWHVRNSNGDMVPFSSFSTGRWSFGSPKLERFNGISSVNIQGSP 833

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
             PG S      +     +                     ++ +    + ++   + +   
Sbjct: 834  APGVSSGDAMAIMTTLAEKLPEGFGIEWTGLSYEERAAGQQTLLLYTLSLLFVFLCLA-- 891

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +   W   +  +  + L +  T+    L G+  ++     +LT +G +  + +++ + 
Sbjct: 892  -ALYESWSVPMAVMLVVPLGVLGTVLATFLSGLSNDVYFKVGLLTTVGLTAKNAILIVEF 950

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +    LY + I+ ++ +  + ++ L   V TSMA  + V P+A     G +   +  I 
Sbjct: 951  AK---TLYESGINLKEAVLSAASQRLRPIVMTSMAFILGVTPLAFSSGAGSASQHAIGIG 1007

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +  G++     +IF      + +    A+ 
Sbjct: 1008 VIGGMLSGTLLTIFFVPLFFILVQSRFARK 1037


>gi|172061569|ref|YP_001809221.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           ambifaria MC40-6]
 gi|171994086|gb|ACB65005.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MC40-6]
          Length = 1066

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPISQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPVLPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANFVASHVKDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+RL     T   +S      N    G   G    +   
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTRLTNYGLTPVDVSSAIAAQNVQIAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        I       
Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVSKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNNSREKYHVGVHHVIKRSGRWLIIY 544



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++    
Sbjct: 258 SQVRLKDVSKIELGGENYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 80/219 (36%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K   +    +         +   +    
Sbjct: 816  ERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    + G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVVGALLAATMRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/522 (11%), Positives = 136/522 (26%), Gaps = 38/522 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   + + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLKDEKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSQRQHANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  +++      I  + +    D  ++         +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDAMVIPFNPPSIPELGTAAGFDFELTDNAGLGHNALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLQGVRPNGLNDTPQYKVDIDREKANALGVTAEAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDLNVWYVRNGSGGMVPFGAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      V    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L V+  L   ++ G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVVGALLAATMRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVM 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             L      G  +       +   ++ + F AI ++    + I
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028


>gi|325123164|gb|ADY82687.1| resistance-nodulation-cell division (RND) multidrug efflux
           transporter MexB [Acinetobacter calcoaceticus PHEA-2]
          Length = 1031

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 88/677 (12%), Positives = 205/677 (30%), Gaps = 43/677 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   L        ++R+P   P               + +   
Sbjct: 8   QRPIFASVLAIIVMAFGIFSVL-----NLPVERYPDIAPPK-------------ITVSAS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDNLLYFSSTSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         S  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVVGLYDSTGKSGNIELSDYLTTHVVDDLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGESDVFGSQ-YAMRIWLNPEKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKANQTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLIEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     +   +   +           +    +      +
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLTPKEAAIESMGEISGALVGITLVLTAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSR 530
            + F GG      R F+IT+  ++ +S+  A+ +  A+   I     + M+         
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLVVALVLTPALCALILKPNPEPMRWAVWFNKKI 515

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L    I I     R+    I I  ++ ++  LF  GL  G   K    +  +  + VD
Sbjct: 516 DQLKNQYIKIVQTSIRYSKSVIVIFVALIAVFALFYSGLKSGFIPKEDQGILSVQIKLVD 575

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +  + +  +     F   + +   LV ++Y    S     + +         V    
Sbjct: 576 SAPISQSQKIGEQVRQYFLTQEDKNVDLVLIRYGRNYSGTGQNLAQGFIALKPWDVRTGK 635

Query: 651 IQNTEIVGPKISRELIR 667
             + + +  +  +   +
Sbjct: 636 ENSADAIQKRAMKYFSQ 652



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 82/199 (41%), Gaps = 8/199 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  I  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLIEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   ++ ++   +S+ E  G  V  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLTPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   + ++   ++ +   +
Sbjct: 475 LVAAMALSLVVALVLTPAL 493



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 78/246 (31%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 787  NNQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVASGSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             +           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DVGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             S  +   +  +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKSAIEAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLSS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFRSKA 1029


>gi|293609925|ref|ZP_06692227.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828377|gb|EFF86740.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1031

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 88/677 (12%), Positives = 205/677 (30%), Gaps = 43/677 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   L        ++R+P   P               + +   
Sbjct: 8   QRPIFASVLAIIVMAFGIFSVL-----NLPVERYPDIAPPK-------------ITVSAS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDNLLYFSSTSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         S  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVVGLYDSTGKSGNIELSDYLTTHVVDDLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGESDVFGSQ-YAMRIWLNPEKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKANQTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLIEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     +   +   +           +    +      +
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLTPKEAAIESMGEISGALVGITLVLTAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSR 530
            + F GG      R F+IT+  ++ +S+  A+ +  A+   I     + M+         
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLVVALVLTPALCALILKPNPEPMRWAVWFNKKI 515

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L    I I     R+    I I  ++ ++  LF  GL  G   K    +  +  + VD
Sbjct: 516 DQLKNQYIKIVQTSIRYSKSVIVIFVALIAVFALFYSGLKSGFIPKEDQGILSVQIKLVD 575

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +  + +  +     F   + +   LV ++Y    S     + +         V    
Sbjct: 576 SAPISQSQKIGEQVRQYFLTQEDKNVDLVLIRYGRNYSGTGQNLAQGFIALKPWDVRTGK 635

Query: 651 IQNTEIVGPKISRELIR 667
             + + +  +  +   +
Sbjct: 636 ENSADAIQKRAMKYFSQ 652



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/199 (16%), Positives = 82/199 (41%), Gaps = 8/199 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  I  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLIEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   ++ ++   +S+ E  G  V  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLTPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   + ++   ++ +   +
Sbjct: 475 LVAAMALSLVVALVLTPAL 493



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 78/246 (31%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 787  NNQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVASGSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             +           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DVGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             S  +   +  +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKSAIEAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFRSKA 1029


>gi|328470943|gb|EGF41854.1| putative acriflavin resistance protein [Vibrio parahaemolyticus
           10329]
          Length = 1050

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 77/692 (11%), Positives = 186/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPQISPP-------------SVSVTAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           ++   +          +    DP ++  L  TT+ +       N        G     + 
Sbjct: 170 AKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYAALAEQNVQVAAGRVGAAPYNNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANPNGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGNGKFRGQDASIVALSLQSDANALESGKAVMELLERLSENFPEGMTYETSYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLVEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +  L   
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATLLAMKEVTGPIITSTLVLLAVF 456

Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +    L    G   R FA+T+ +S++IS   A+++  A+   +            ++ + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTANWFQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  S     T       + KG + + V  
Sbjct: 517 GLERVTTRYGQVAGFLVKKSLLLVTFFIVAVAAVSFFAKTTSTAFVPQEDKGILLVSVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     +   +    T  
Sbjct: 577 PDSASLSRTEEVTSDLMKMIEEEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWETRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +   +  +I+     +    V+ + 
Sbjct: 637 SLG-GEHSANAIAARINGRAAMELPQAVVFAM 667



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 87/235 (37%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D + +    + + +        +++   + +  + ++++E  P 
Sbjct: 262 VYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESGKAVMELLERLSENFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  ++ + + ++             L  +  + + +  T
Sbjct: 322 GMTYETSYDTTVFVAESIKGVVKTLVEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         +IS R     ++ E
Sbjct: 382 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLLAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      LP+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/394 (11%), Positives = 105/394 (26%), Gaps = 24/394 (6%)

Query: 458  RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFI 514
             A +   +      +   V+F  G  AV G     G   ++      S   +   M   I
Sbjct: 645  NAIAARINGRAAMELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLSMVMGEMI 704

Query: 515  IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
                +   I     +    +P                            L +  +N    
Sbjct: 705  QAANQAPEIAYTFSTFRANVPHYYVDIDREKAQQLGISLSSIFQTLQGNLGSLYVNDFTM 764

Query: 575  FKGGIQLGVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            F    ++ + A+              V  S+      S  +        D    + +   
Sbjct: 765  FGKNFRVTMQADSQHRSGMQDLERFHVRSSMGEMVPLSTLVSYEQVFEPDVAWRYNMYRS 824

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAML 681
                   A           +  +      Q        ++ + +  G   +   +   + 
Sbjct: 825  AIIQGQPAPGYSSGDAIAAMERVAAEVLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIF 884

Query: 682  IY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            IY   +     W   L  I  + +    +     L G   NL A   ++ LI  +  + +
Sbjct: 885  IYLFMVAQYESWSIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAI 944

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIG 795
            ++ +  ++  +     ++  D   K           TS +  + + P+    G+      
Sbjct: 945  LIVEFAKQEREE--KDVAIDDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQN 1002

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            S  + +  G++    +  F+       +   R K
Sbjct: 1003 SLGVSLIGGLLCVLLAGTFLIPGFYALVQRQRDK 1036


>gi|170697627|ref|ZP_02888716.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
 gi|170137514|gb|EDT05753.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
          Length = 1066

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 69/574 (12%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPISQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPVLPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANFVASHVKDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+RL     T   +S      N    G   G    +   
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTRLTNYGLTPVDVSSAIAAQNVQIAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        I       
Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVSKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNNSREKYHVGVHHVIKRSGRWLIIY 544



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++    
Sbjct: 258 SQVRLKDVSKIELGGENYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 80/219 (36%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K   +    +         +   +    
Sbjct: 816  ERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGSQAPVL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    + G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVVGALLAATMRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 60/522 (11%), Positives = 136/522 (26%), Gaps = 38/522 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   + + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLKDEKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSQRQHANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  +++      I  + +    D  ++         +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDAMVIPFNPPSIPELGTAAGFDFELTDNAGLGHNALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLQGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDLNVWYVRNGSGGMVPFGAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      V    I    A         TA    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGVSAMEIQGQAAPGKSTGQAMTAMEGLAKKLPVGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L V+  L   ++ G    +  
Sbjct: 871  ----QAPVLYAISILVVFLCLAALYESWSIPFSVIMVVPLGVVGALLAATMRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVM 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             L      G  +       +   ++ + F AI ++    + I
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028


>gi|170698001|ref|ZP_02889083.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
 gi|170137063|gb|EDT05309.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
          Length = 1071

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   +   +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQSIREQNVQVAAGVIGASPSLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGIDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  L+   ++ +++I T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLGFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFK 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 RFNKVFHR 530



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+      G  +  +  I + FG+
Sbjct: 960  -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 90/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 252 IVVKTTPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  +L 
Sbjct: 312 TMAELKQDMP-AGIDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+    + +
Sbjct: 371 PLIAVPVSIIGTFSLLLGFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ESGM 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           + R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 428 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 487 SLTLSPALSAILLK 500


>gi|77917903|ref|YP_355718.1| acridine efflux pump [Pelobacter carbinolicus DSM 2380]
 gi|77543986|gb|ABA87548.1| acridine efflux pump [Pelobacter carbinolicus DSM 2380]
          Length = 1053

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/585 (12%), Positives = 155/585 (26%), Gaps = 44/585 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        + ++P                   + ++   
Sbjct: 8   RPIFAWVVAILIMLAGSLAIL-----TMPIAQYPPIAMPE-------------IQVQARY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  LQ      +   +        +   S    Q  ITL+F+++        +V  
Sbjct: 50  PGASAQTLQDAVTQIIEQKMTGIDNLLYMTSSSDSTGQATITLTFSNATDPNMAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +  T      +++     +       E +  +     D +   
Sbjct: 110 KLSLATPLLPQVVQRQGISVTKSTNNYLLIMGLVSEDASMGRYEVADYMESNIKDALARL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L     T   ++      N       FG        
Sbjct: 170 PGVGELEMFDTQ-HAMRVWLDPDKLNNYRLTPTDVASAIQSQNAEVSAGEFGGLPAHQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +             N+     +    I          +      +       
Sbjct: 229 QLNATITVR-------------NYMQTPEEFGSIILRTNSDGSNVYLRDVAEVKVGAERY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T +      A L          +           
Sbjct: 276 DSRSRYNGKPASAMGIKLATGANALDTADQVKAKMAELSKYFPSGLKVVYSYDTTPFTKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SIKTVVHTLLEAIVLVFLVMFLFLQNFRATLIPTLAVPVVLLGTFGVLAATGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +           ++   I      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSAEGLSPREATIKSMKEITGALWGIAIVLSAVFVP 455

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSR 530
           +FFF    G   R F+IT+  ++L+S+  A+    A+   +   +      S        
Sbjct: 456 MFFFSGSAGIIYRQFSITIVTAMLLSVLVAMIFTPALCATLLKPVARGHDVSERSVFFRF 515

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
           F              R     +    +   +  L    +  G+ +
Sbjct: 516 FRGFNHWFDRGSGGYRTIVGRMIGKPNRYMLIYLSIVVVMGGLFW 560



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D   +      + +        +++     ++    ++++  
Sbjct: 258 SNVYLRDVAEVKVGAERYDSRSRYNGKPASAMGIKLATGANALDTADQVKAKMAELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P              ++  I+  +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PSGLKVVYSYDTTPFTKISIKTVVHTLLEAIVLVFLVMFLFLQNFRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   + A++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGVLAATGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSAEGLSPREATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G     ++      +PM  + GS   +   F+I +   ++++   ++     +   
Sbjct: 436 KEITGALWGIAIVLSAVFVPMFFFSGSAGIIYRQFSITIVTAMLLSVLVAMIFTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 63/200 (31%), Gaps = 9/200 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              +  +   G+S                                   + +      +++ 
Sbjct: 825  VEILGEPASGESSGTAMKEIEKMAAQLPAAIGCEWTGLSFQERAAGAQTMFLYATSLVVV 884

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             + +     +   W      +  + L +   L   +  G   ++    A+LT IG S  +
Sbjct: 885  FLCLA---ALYESWAIPASVMLVVPLGVVGALLAASARGFSNDVYFQIAILTTIGLSAKN 941

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ +  ++ M      +   +   ++    L   + TS+A F  VLPMA+    G   
Sbjct: 942  AILIVEFAKERMHF---GMGLLEATVEAAQLRLRPILMTSLAFFFGVLPMALSKGAGSGA 998

Query: 794  IGSFAIPMAFGIVVAASSSI 813
              S    +  GI+     +I
Sbjct: 999  QNSIGTGLVGGIISGTLLAI 1018


>gi|227328723|ref|ZP_03832747.1| acriflavin resistance protein B [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 1042

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 64/574 (11%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  M+   GLL  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVLAIMVMLTGLLAIV-----KLPIAQYPTIAPPA-------------IEVTANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S      +ITL+F      +    +V  
Sbjct: 50  PGADASTLQDSVTQVIEQNMNGIDNLMYMSSSSDSSGTVQITLTFDAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVNVQKSSSSFLMVAAFISEDGKMSQEDIADYVAANVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++    + NN       G        
Sbjct: 170 SGVGDAQLFGAQ-YAMRIWLDPNKLNNYQLTAGDVTAAIRVQNNQIAAGQLGGAPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 QLNASIIAQTRLNSAE-------------EFSKILLKVNADGSQVRLKDVARVELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L          +           
Sbjct: 276 DTIARFNGQPAAGIGIKLATGANALDTATAVKNSLTKLEEFFPSGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F+IT+  ++++S+  A+ +  A+   +     +K I          
Sbjct: 456 MAFTGGSTGAIYRQFSITIVSAMVLSVLVALILTPALCATL-----LKPIAKGDHGEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++              +   L  +
Sbjct: 511 FFGWFNRLFEKSTHHYTDSVANILRSTGRYLVIY 544



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D   +        +        +++     ++    K+ E  
Sbjct: 258 SQVRLKDVARVELGAESYDTIARFNGQPAAGIGIKLATGANALDTATAVKNSLTKLEEFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA  GGS       F+I +   +V++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFTGGSTGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +    + +  L      E  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMALMESFVTQLPQGIGYEWTGMSYQERLSGNQAPAIYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L I   L    + G+E ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGIIGALIAANMTGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLDAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|153837184|ref|ZP_01989851.1| acriflavin resistance plasma membrane protein [Vibrio
           parahaemolyticus AQ3810]
 gi|260900443|ref|ZP_05908838.1| RND transporter, HAE1 family [Vibrio parahaemolyticus AQ4037]
 gi|149749601|gb|EDM60347.1| acriflavin resistance plasma membrane protein [Vibrio
           parahaemolyticus AQ3810]
 gi|308107110|gb|EFO44650.1| RND transporter, HAE1 family [Vibrio parahaemolyticus AQ4037]
          Length = 1050

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/692 (10%), Positives = 186/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPQISPP-------------SVSVTAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           ++   +          +    DP ++  L  TT+ +       N        G     + 
Sbjct: 170 AKGISEVNVIGGGEYAMRVWLDPEKMANLKLTTSDVYAALAEQNVQVAAGRVGAAPYNNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFENVVLRANPNGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGNGKFRGQDASIVALSLQSDANALESGKAVMELLERLSENFPEGMTYETSYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLVEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATLLAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +   +L    G   R FA+T+ +S++IS   A+++  A+   +            ++ + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTANWFQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  S     T       + KG + + V  
Sbjct: 517 GLERVTTRYGQVAGFLVKKSLLLVTFFIVAVAAVSFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     +   +    T  
Sbjct: 577 PDSASLSRTEEVTSDLMKMIEEEPGVDGVTVANGFSFMTGAAASNGASLFIKLHDWETRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +   +  +I+     +    V+ + 
Sbjct: 637 SLG-GEHSANAIAARINGRAAMELPQAVVFAM 667



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 87/235 (37%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D + +    + + +        +++   + +  + ++++E  P 
Sbjct: 262 VYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESGKAVMELLERLSENFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  ++ + + ++             L  +  + + +  T
Sbjct: 322 GMTYETSYDTTVFVAESIKGVVKTLVEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         +IS R     ++ E
Sbjct: 382 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLLAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      LP+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/394 (11%), Positives = 105/394 (26%), Gaps = 24/394 (6%)

Query: 458  RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFI 514
             A +   +      +   V+F  G  AV G     G   ++      S   +   M   I
Sbjct: 645  NAIAARINGRAAMELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLSMVMGEMI 704

Query: 515  IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
                +   I     +    +P                            L +  +N    
Sbjct: 705  QAANQAPEIAYTFSTFRANVPHYYVDIDREKAQQLGISLSSIFQTLQGNLGSLYVNDFTM 764

Query: 575  FKGGIQLGVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            F    ++ + A+              V  S+      S  +        D    + +   
Sbjct: 765  FGKNFRVTMQADSQHRSGMQDLERFHVRSSMGEMVPLSTLVSYEQVFEPDVAWRYNMYRS 824

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAML 681
                   A           +  +      Q        ++ + +  G   +   +   + 
Sbjct: 825  AIIQGQPAPGYSSGDAIAAMERVAAEVLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIF 884

Query: 682  IY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            IY   +     W   L  I  + +    +     L G   NL A   ++ LI  +  + +
Sbjct: 885  IYLFMVAQYESWSIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAI 944

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIG 795
            ++ +  ++  +     ++  D   K           TS +  + + P+    G+      
Sbjct: 945  LIVEFAKQEREE--KDVAIDDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQN 1002

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            S  + +  G++    +  F+       +   R K
Sbjct: 1003 SLGVSLIGGLLCVLLAGTFLIPGFYALVQRQREK 1036


>gi|171914587|ref|ZP_02930057.1| acriflavin resistance protein D [Verrucomicrobium spinosum DSM
           4136]
          Length = 1055

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 76/571 (13%), Positives = 168/571 (29%), Gaps = 39/571 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I  +G L      L    + R+P   P               + +    
Sbjct: 8   RRVFAMVISILILLVGWL-----GLRSLPIARYPDMTPPT-------------IQVTATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117
               +  ++      L   +   E +   S       Q+ I ++F   +  ++ A  V  
Sbjct: 50  PGASSKVVEETVTTPLEQEINGAEDMLYMSSGSTSDGQSSIKVTFKVGKNIDDAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     KL  D  KN +  T +    +++   +        +  +         ++   
Sbjct: 110 RVARAQPKLPTDVTKNGITVTKQSPDMLLVFALSSPDGTYDDLFLNNYAFLNLQSELARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +         +    +     P +L +L  T   +S      N        G        
Sbjct: 170 QGVGAVQIFTQKDYSMRVWLQPDKLAKLGLTANDVSKALAEQNVQAAAGQIGAPPAEKGT 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V  K  +              +  +    +                         
Sbjct: 230 EFQFSVNVKGRL-------------VQPDEFGEIVLTTLADGTVVRLRDVARTELGGKDY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +   T E        L           V          
Sbjct: 277 ASFGRINGSPAALIGIFQLPTANALDTAEACKKRMNELATAFPSGMEVKVSFDTTLFVTA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV++V+F+ +   +  L+   ++ +++I T A+   LG T+   ++
Sbjct: 337 SIEEVIHTLAEAFVLVVVVVFIFLGNWRATLIPMLAVPVSLIGTFAIFGPLGFTINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +     K  S   +           +    +      V +
Sbjct: 397 FAMVLAIGLVVDDAIVVVEAVEHHIEKGLSPLAATRKAMHEVSGPVIAIALVLCSVFVPV 456

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F G   G   + FAIT+ +S+++S   A+++  A+ + ++R+++     +      F  
Sbjct: 457 SFMGGITGKLYQQFAITLSVSVMLSALVALTLTPALCVMLLRHREPPRGPLGRGLAAFNR 516

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLF 565
                     +    +    + ++  +  L+
Sbjct: 517 WFDRVTGHYVSICRWLIRYAVIALVLLAGLY 547



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 58/145 (40%), Gaps = 6/145 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L  +  + + +  T   F   G   N   + A++  IG  V+D +VV + +     
Sbjct: 363 WRATLIPMLAVPVSLIGTFAIFGPLGFTINTLTLFAMVLAIGLVVDDAIVVVEAV---EH 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                +S      K+++E  G  +  ++      +P++  GG        FAI ++  ++
Sbjct: 420 HIEKGLSPLAATRKAMHEVSGPVIAIALVLCSVFVPVSFMGGITGKLYQQFAITLSVSVM 479

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
           ++A  ++ +   + + +   R    
Sbjct: 480 LSALVALTLTPALCVMLLRHREPPR 504



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 53/146 (36%), Gaps = 10/146 (6%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRK 746
             W      +  L + +        + G+  ++     ++ LIG +  + +++  + ++R+
Sbjct: 892  SWAVPFAVLFGLPIGVFGAFFGAWMRGLTNDVYVQIGLVMLIGLAAKNAILIVEFAKVRR 951

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
                    +   +   +     L   + TS+A  + V+P+ +    G +   S    + F
Sbjct: 952  EA-----GMGIEEAALEGAKLRLRPIIMTSLAFILGVVPLVLSSGAGAASRQSLGTAVCF 1006

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAK 829
            G+  A    +F    +   +     K
Sbjct: 1007 GMTAATLIGVFFIPWLYKEVQTLAEK 1032


>gi|226947135|ref|YP_002802208.1| multidrug efflux pump RND family transporter protein [Azotobacter
           vinelandii DJ]
 gi|226722062|gb|ACO81233.1| multidrug efflux pump RND-family transporter protein [Azotobacter
           vinelandii DJ]
          Length = 1046

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/687 (10%), Positives = 173/687 (25%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L     +  + ++P+  P               +      
Sbjct: 8   RPIFAWVIALVLMLGGGLAIL-----KLSVTQYPNISPPAVQ---------ISVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L              + +I ++F      +    +V   LQ 
Sbjct: 54  AQTVQDTVVQVIEQQLNGLDGLRYISSVSNADGSLQIIVTFEQGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +     +   +++          +  +    I     D I       
Sbjct: 114 ATPMLPEEVQRQGIRVVKYQVNFMMILGLVSTDGRMNGFDMGNYIASNLQDPISRVYGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   ++      N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPEKLNNYQLTPQDVTSAISAQNVQVSSGQLGGLPAARGVQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K                    +    +        +        +G          
Sbjct: 233 TVIGKTR-------------MRTADEFKEILLKVNRDGSQVRLKHVAEVGLSAENFSIAS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   ++         L+         +           S   
Sbjct: 280 KYNGMPAAGMALRLAPGANLLESVAAVRAKLDELKPYLPEGVEVVYPYETAPMVSASIEA 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L   G T+ + ++  +V
Sbjct: 340 VVHTLFEAIVLVFLVMYLFLQNFRATLIPTLAVPVVLLATFGVLFACGFTINVMTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMVEEGLSPKEATRKSMGQISGALVGIALVISAVFLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++  S+  A+    A+   +           +       +   
Sbjct: 460 GGSAGVIYRQFSITIISAMSFSVLIALIFTPALCATLLKPVAKGAHHEKRGFFGWFNRTF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R   + +   +L    +   L   G     + +G + + +    
Sbjct: 520 ERSADGYQRGVGGITRRRWSFMLIYLLLVGGVAYLFLRLPGSFLPNEDQGTMFVQIQLPP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                   + L   +   +  +       F V      G   +   +   +K       P
Sbjct: 580 NSSAERTEAVLAETRDYLLKDEGDTVASVFSVNGFNFAGRGQSSGLLFINLKPFSERPRP 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
              I             +    ++ V+
Sbjct: 640 EQDIFALAQRAAVRYARIKDANVIPVV 666



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 84/246 (34%), Gaps = 6/246 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V     S +   I+ +        +        + +     +     ++ 
Sbjct: 255 RDGSQVRLKHVAEVGLSAENFSIASKYNGMPAAGMALRLAPGANLLESVAAVRAKLDELK 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             +P             +    I   +  +  + + + + +++  + +   L     + +
Sbjct: 315 PYLPEGVEVVYPYETAPMVSASIEAVVHTLFEAIVLVFLVMYLFLQNFRATLIPTLAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T G     G   N+  + A++  IG  V+D +VV + +     +    +S ++   
Sbjct: 375 VLLATFGVLFACGFTINVMTMFAMVLAIGLLVDDAIVVVENV--ERIMVEEGLSPKEATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+ +  G  V  ++      LPMA +GG   VI   F+I +   +  +   ++     +
Sbjct: 433 KSMGQISGALVGIALVISAVFLPMAFFGGSAGVIYRQFSITIISAMSFSVLIALIFTPAL 492

Query: 820 LLFIYD 825
              +  
Sbjct: 493 CATLLK 498



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 60/162 (37%), Gaps = 6/162 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             +S + + + +   ++ W      +  + L +   +G   L G+  ++     +LT +G 
Sbjct: 876  ALSLLIVFLCLAALYESWSIPFSVMLVVPLGVLGAVGATLLRGLSNDVFFQVGMLTTMGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +  +   +      S      ++    L   + TS+A  + VLP+A     
Sbjct: 936  AAKNAILIVEFAKDLYEH--QGRSLMQAASEAARLRLRPIIMTSIAFALGVLPLATATGP 993

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G     S    +  G + A   +IF      + +     +  
Sbjct: 994  GSGSQHSIGTGVLGGTLAATFLAIFFVPLFYVVVVGLFERQK 1035


>gi|157363172|ref|YP_001469939.1| protein-export membrane protein SecF [Thermotoga lettingae TMO]
 gi|157313776|gb|ABV32875.1| protein-export membrane protein SecF [Thermotoga lettingae TMO]
          Length = 298

 Score =  192 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 155/299 (51%), Gaps = 9/299 (3%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL--------ANRP 588
              + F+  R + + IS +  + S+  +   G N+G++F GG ++ +         ++  
Sbjct: 1   MKKMDFVGKRKFFIIISTILIVASVISMLAKGFNFGVEFTGGSEIILRVESNSFSESDVR 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             L  + S+ E+ ++  +                 +  ++  + +V   ++++I+ +   
Sbjct: 61  TILQNISSDFEAARVTRVRSVGDPEGITKFSITLSKTFETEEKAKVQSSIEQQISTVGVK 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + +    G   + E+ R     ++I+  A+L+YI +RF + F +GA   LI D+  TL
Sbjct: 121 GQVISFNETGGSAAEEIRRLTWRSILITLAAVLVYITLRFNFVFGIGATIALIHDVLITL 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G F+  G E N+ AVAA LTLIGYS+ND +VVYDR+R+NMK +        L+++SIN+ 
Sbjct: 181 GIFSFTGYELNVPAVAAFLTLIGYSLNDTIVVYDRIRENMKKF-KGKEISSLVNESINQV 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             R++ TS+  F  V  + ++ G+ I  FA  M  G+VV   SSI+IA+P+++     R
Sbjct: 240 FRRTLNTSLTTFFVVFILFLFAGNAIKPFAFGMTIGVVVGTYSSIYIASPLVIKWVKSR 298


>gi|291571842|dbj|BAI94114.1| protein-export membrane protein [Arthrospira platensis NIES-39]
          Length = 330

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 152/318 (47%), Gaps = 23/318 (7%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNY--------GIDFKGGIQLGVLAN--- 586
           +     + R     IS    +  I  +     N         G+DF GG +L +  +   
Sbjct: 1   MTFSVTKRRSLWWIISAAVILTGIVGMLLSWTNPDIGAPIRPGLDFVGGTRLQLELDCTV 60

Query: 587 -----RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                 P++++ VR  L++  +G  S Q  D +     R                 ++  
Sbjct: 61  AGNCDGPIEINQVREVLQAQDLGSSSIQLLDKDPIQRDRQIVSVRTKNLNVDERTQLEAA 120

Query: 642 ITEIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           + E +          + VGP + R++   G+  ++++   + +Y+  RF++ +A+ A   
Sbjct: 121 LREAIGVFDPLATQIDTVGPTLGRQIFTSGLKALLVAFAGITLYLTFRFQFDYAVFAFVA 180

Query: 700 LILDITKTLGFFALFGIEF----NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           L  D+  T+G F++FG+ F    +   + A+LT+IG+SVND VV+YDR+R+ +K      
Sbjct: 181 LFHDVILTMGVFSIFGLVFGLEADTLFLVALLTIIGFSVNDTVVIYDRIREILKQMP-DA 239

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           S  +++D ++N+TL RS+ T++   + +  + ++GG  +  FA+ +  G +  + SSIFI
Sbjct: 240 STGEVVDNAVNQTLARSINTTVTTILPLFCIFLFGGETLKYFALTLIIGFIAGSYSSIFI 299

Query: 816 AAPILLFIYDWRAKNARI 833
           A+ +L +  D +A  + I
Sbjct: 300 ASTLLGWWRDRQASKSTI 317


>gi|269960105|ref|ZP_06174482.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835404|gb|EEZ89486.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1050

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 76/692 (10%), Positives = 181/692 (26%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPKISPP-------------SVSVTAF 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSANDGSYSLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDKFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT  +       N        G     + 
Sbjct: 170 VKGISEVNVIGGGEYAMRVWLDPEKMANLNLTTTDVYSALAEQNVQVAAGRIGAAPYNNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ESVSEFEDVVLRANPDGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGNGKFRGQDASIVALSLQSDANALESGQAVMDLLERLSTNFPEGMAYETSYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQATGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATLLAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +   +L    G   R FA+T+ +S++IS   A+++  A+   +            ++ + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTANWFQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             ++        +  +  +     T       + KG + + V  
Sbjct: 517 GLERVTARYGQIAGFLVKKSMLLITFFFVAVAAVTFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS        L          DG              +     +   +    T  
Sbjct: 577 PDSASLSRTEEVTNELMKMVEQEPGVDGVTVANGYSFMTGAAASNGASLFIKLHDWDTRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                     I      R  +      V+ + 
Sbjct: 637 SLDGEHAANAIANRINGRAAME-LPQAVVFAM 667



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 86/235 (36%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D + +    + + +        +++   + +  + ++++   P 
Sbjct: 262 VYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESGQAVMDLLERLSTNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GMAYETSYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         +IS R     ++ E
Sbjct: 382 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLLAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      LP+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/447 (11%), Positives = 118/447 (26%), Gaps = 26/447 (5%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI--F 464
            L+      P + G+ +  G +  +    +       + +     +   G   A +     
Sbjct: 592  LMKMVEQEPGVDGVTVANGYSFMTGAAASNGASLFIKLHDWDTRNSLDGEHAANAIANRI 651

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
            +      +   V+F  G  AV G     G   ++      S   +   M   I    +  
Sbjct: 652  NGRAAMELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLSMVMGEMIQAANQAP 711

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             I     +    +P                            L +  +N    F    ++
Sbjct: 712  EIAYTFSTFRANVPHYYVDIDREKAQQLGIPLSSIFQTLQGNLGSLYVNDFTMFGKNFRV 771

Query: 582  GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + A+              V  S       S  +        D    + +          
Sbjct: 772  TMQADSEHRSSMDDLERFHVRSSSGDMVPLSTLVSYEQVFEPDVAWRYNMYRSAIIQGQP 831

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
            A           +  +      Q        ++ + +  G   +   +   + IY   + 
Sbjct: 832  APGYSSGDAIAAMERVAAEVLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 891

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   L  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892  QYESWSIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
            +  +     +   +   +           TS +  + + P+    G+      S  I + 
Sbjct: 952  QEREE--KDVDIDNAAVEGGKLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLI 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++    +  F+       +   R K
Sbjct: 1010 GGLLCVLLAGTFLIPGFYALVQRKREK 1036


>gi|262278082|ref|ZP_06055867.1| multidrug efflux protein [Acinetobacter calcoaceticus RUH2202]
 gi|262258433|gb|EEY77166.1| multidrug efflux protein [Acinetobacter calcoaceticus RUH2202]
          Length = 1031

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 87/677 (12%), Positives = 211/677 (31%), Gaps = 43/677 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   L        ++R+P   P               + +   
Sbjct: 8   QRPIFASVLAIIVMAFGIFSVL-----NLPVERYPDIAPPK-------------ITVSAS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSTSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVVGLYDSTGKAGNIELSDYLTTHVVDDLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGESDVFGSQ-YAMRIWLNPDKLKQYNLMPSDVASAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                 +    +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEEFKNIVVKSNQTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        + +        +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQVTSKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLVEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  +VL IGL VD  I+V E +     +        +++     + + I  + +   +  
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLTPKEAAIESMGEISGALIGITLVLTAVFI 455

Query: 475 VVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSR 530
            + F  G  G   R F+IT+  ++ +S+  A+ +  A+   I     + M+         
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLVVALVLTPALCALILKPNPEPMRWAVWFNQKI 515

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L    I I     R+    + I  ++ ++  LF  GL  G   K    +  +  + VD
Sbjct: 516 DQLKNQYIKIVQTSIRYSKSVVVIFVALIAVFALFYSGLKSGFIPKEDQGILSVQIKLVD 575

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +  + +  +     F   + +   LV ++Y    S     + +         V    
Sbjct: 576 SAPISQSQKIGEQVRQYFLTQEDKNVDLVLIRYGRNYSGTGQNLAQGFIALKPWDVRTGK 635

Query: 651 IQNTEIVGPKISRELIR 667
             + + +  +  +   R
Sbjct: 636 DDSADAIQKRAMKYFSR 652



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 82/199 (41%), Gaps = 8/199 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ V  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQVTSKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   ++ ++   +S+ E  G  +  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLTPKEAAIESMGEISGALIGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   + ++   ++ +   +
Sbjct: 475 LVAAMALSLVVALVLTPAL 493



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 76/246 (30%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 787  NNQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVASGSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             I           ++   + I   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DIGLAWTGLSFEEQKSTNQAIWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             +         +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKNAIQAALDGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFRSKA 1029


>gi|167578915|ref|ZP_02371789.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis TXDOH]
          Length = 1061

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 154/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVVILLAGMIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPNDSYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   T   +       N      + G          Q 
Sbjct: 176 QVQLWGAGDYAMRVWLDPQKVAQRNLTADDVVRAIREQNVQVAAGVIGASPTLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQNED-------------EFGDIVVKTAPDGGVTRLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLAISDEVRKTMAELKQDFPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL L G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLLFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLTARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGKTPFEAAVEASRLRLRPILMTSIAFIMGVVPLVLSTGAGAEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 89/253 (35%), Gaps = 12/253 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +            + + V+K
Sbjct: 252 IVVKTAPDGGVTRLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLAISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 312 TMAELKQDFP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLIAVPVSIVGTFSLLLLFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIVVAASSS 812
           + R    K++ E  G  +  ++   A    L       G     FA+ +A   V++A +S
Sbjct: 428 TARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNS 487

Query: 813 IFIAAPILLFIYD 825
           + ++  +   +  
Sbjct: 488 LTLSPALSAILLK 500


>gi|67922934|ref|ZP_00516430.1| SecD/SecF/SecDF export membrane protein:SecF protein [Crocosphaera
           watsonii WH 8501]
 gi|67855217|gb|EAM50480.1| SecD/SecF/SecDF export membrane protein:SecF protein [Crocosphaera
           watsonii WH 8501]
          Length = 308

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 74/251 (29%), Positives = 148/251 (58%), Gaps = 9/251 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +     + +D+  VR+ L   ++G+ + Q  +G    ++ ++ +  D   +T++ + + +
Sbjct: 58  VEDTCEQAIDVGEVRNILTEKELGNSTIQVLEGT---ILSIRTKNLDVDERTQLQQELNE 114

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           KI +  P       + VGP I +EL   GI+ +++S   +++Y+ +RFK+ +AL AI  L
Sbjct: 115 KIGDFDPE--TTQIDTVGPTIGKELFESGILALLVSFFGIIVYLSVRFKFDYALFAILAL 172

Query: 701 ILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + D+  T GFFA+ G+    E +   + A+LT+IG+SVND VV+YDR+R+N   Y   +S
Sbjct: 173 VHDVLITAGFFAVLGLVAGVEVDSLFLVALLTIIGFSVNDTVVIYDRIRENTDKYIEELS 232

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             D+++ S+N++L RS+ T++   + ++ + ++GG  +  F++ +  G +  + SSIFIA
Sbjct: 233 INDIVENSVNQSLTRSINTTVTTLLPLIGIFLFGGETLKYFSLALILGFIAGSYSSIFIA 292

Query: 817 APILLFIYDWR 827
           + +L +  + +
Sbjct: 293 STLLAWWRNRQ 303


>gi|152987463|ref|YP_001346677.1| preprotein translocase subunit SecF [Pseudomonas aeruginosa PA7]
 gi|150962621|gb|ABR84646.1| protein-export membrane protein SecF [Pseudomonas aeruginosa PA7]
          Length = 306

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 162/285 (56%), Gaps = 5/285 (1%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I FM  R     ++++ ++ ++   FT G+N+G+DF GG  + +   +P DL  VR  L
Sbjct: 7   TINFMGIRNVAFAVTLILTVIALGSWFTKGINFGLDFTGGTLIELTYEQPADLGKVRGQL 66

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                 D   Q+F   ++ LVR+  +  +   +            +    ++++  E VG
Sbjct: 67  VGAGYEDAVVQSFGDARDVLVRMPSEDPELGKKVAAALQQ----ADTGNPASLKRVEYVG 122

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P++  EL  +G +G++++   +L+Y+  RF+W FALGAI +L+ D    +G  + F + F
Sbjct: 123 PQVGEELRDQGGLGMLLALGGILLYVGFRFQWKFALGAILSLVHDAIIVMGVLSFFQVTF 182

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           +LT +AAVL ++GYS+ND +V++DR+R+N ++     S  + ++ S ++TL R++ TS++
Sbjct: 183 DLTVLAAVLAVVGYSLNDTIVIFDRVRENFRVLRK-ASLIENLNISTSQTLLRTIATSVS 241

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +++  +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 242 TLLAIAALLFFGGDNLFGFSIALFVGVLAGTYSSIYIANVVLIWL 286



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 4/139 (2%)

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
                K+ L A  S+  + I+ + +LS    T  L  +A ++  +G +++  I++ +R+R
Sbjct: 150 FRFQWKFALGAILSLVHDAIIVMGVLSFFQVTFDLTVLAAVLAVVGYSLNDTIVIFDRVR 209

Query: 440 EENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           E  R  +      ++  S +     TI  S  T L    +LFF GG  + GF+I + + +
Sbjct: 210 ENFRVLRKASLIENLNISTSQTLLRTIATSVSTLLAIAALLFF-GGDNLFGFSIALFVGV 268

Query: 497 LISMFTAISIVRAMMIFII 515
           L   +++I I   ++I++ 
Sbjct: 269 LAGTYSSIYIANVVLIWLN 287


>gi|53717236|ref|YP_106066.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           ATCC 23344]
 gi|53721328|ref|YP_110313.1| multidrug-efflux transporter protein [Burkholderia pseudomallei
           K96243]
 gi|76817383|ref|YP_336998.1| multidrug-efflux transporter protein [Burkholderia pseudomallei
           1710b]
 gi|124382995|ref|YP_001025938.1| multidrug efflux pump BpeF [Burkholderia mallei NCTC 10229]
 gi|126443861|ref|YP_001061520.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 668]
 gi|126447052|ref|YP_001078027.1| multidrug efflux pump BpeF [Burkholderia mallei NCTC 10247]
 gi|126456019|ref|YP_001074460.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 1106a]
 gi|134280791|ref|ZP_01767501.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 305]
 gi|166999799|ref|ZP_02265629.1| multidrug efflux pump BpeF [Burkholderia mallei PRL-20]
 gi|167741310|ref|ZP_02414084.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 14]
 gi|167818486|ref|ZP_02450166.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 91]
 gi|167826873|ref|ZP_02458344.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 9]
 gi|167848386|ref|ZP_02473894.1| multidrug efflux pump BpeF [Burkholderia pseudomallei B7210]
 gi|167896941|ref|ZP_02484343.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 7894]
 gi|167905324|ref|ZP_02492529.1| multidrug efflux pump BpeF [Burkholderia pseudomallei NCTC 13177]
 gi|167913622|ref|ZP_02500713.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 112]
 gi|167921565|ref|ZP_02508656.1| multidrug efflux pump BpeF [Burkholderia pseudomallei BCC215]
 gi|217423030|ref|ZP_03454532.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 576]
 gi|237509825|ref|ZP_04522540.1| transporter, hydrophobe/amphiphile efflux-1 [Burkholderia
           pseudomallei MSHR346]
 gi|238563520|ref|ZP_00438757.2| OqxB [Burkholderia mallei GB8 horse 4]
 gi|242313906|ref|ZP_04812923.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 1106b]
 gi|254176489|ref|ZP_04883147.1| multidrug efflux pump BpeF [Burkholderia mallei ATCC 10399]
 gi|254189395|ref|ZP_04895905.1| multidrug efflux pump BpeF [Burkholderia pseudomallei Pasteur
           52237]
 gi|254195473|ref|ZP_04901901.1| multidrug efflux pump BpeF [Burkholderia pseudomallei S13]
 gi|254200922|ref|ZP_04907287.1| multidrug efflux pump BpeF [Burkholderia mallei FMH]
 gi|254204885|ref|ZP_04911238.1| multidrug efflux pump BpeF [Burkholderia mallei JHU]
 gi|254262705|ref|ZP_04953570.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 1710a]
 gi|254299452|ref|ZP_04966901.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 406e]
 gi|254359004|ref|ZP_04975276.1| multidrug efflux pump BpeF [Burkholderia mallei 2002721280]
 gi|52211742|emb|CAH37741.1| multidrug-efflux transporter protein [Burkholderia pseudomallei
           K96243]
 gi|52423206|gb|AAU46776.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           ATCC 23344]
 gi|76581856|gb|ABA51330.1| multidrug-efflux transporter protein [Burkholderia pseudomallei
           1710b]
 gi|126223352|gb|ABN86857.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 668]
 gi|126229787|gb|ABN93200.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 1106a]
 gi|126239906|gb|ABO03018.1| multidrug efflux pump BpeF [Burkholderia mallei NCTC 10247]
 gi|134247813|gb|EBA47897.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 305]
 gi|147748534|gb|EDK55609.1| multidrug efflux pump BpeF [Burkholderia mallei FMH]
 gi|147754471|gb|EDK61535.1| multidrug efflux pump BpeF [Burkholderia mallei JHU]
 gi|148028191|gb|EDK86151.1| multidrug efflux pump BpeF [Burkholderia mallei 2002721280]
 gi|157809426|gb|EDO86596.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 406e]
 gi|157937073|gb|EDO92743.1| multidrug efflux pump BpeF [Burkholderia pseudomallei Pasteur
           52237]
 gi|160697531|gb|EDP87501.1| multidrug efflux pump BpeF [Burkholderia mallei ATCC 10399]
 gi|169652220|gb|EDS84913.1| multidrug efflux pump BpeF [Burkholderia pseudomallei S13]
 gi|217393938|gb|EEC33958.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 576]
 gi|235002030|gb|EEP51454.1| transporter, hydrophobe/amphiphile efflux-1 [Burkholderia
           pseudomallei MSHR346]
 gi|238520550|gb|EEP84009.1| OqxB [Burkholderia mallei GB8 horse 4]
 gi|242137145|gb|EES23548.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 1106b]
 gi|243064115|gb|EES46301.1| multidrug efflux pump BpeF [Burkholderia mallei PRL-20]
 gi|254213707|gb|EET03092.1| multidrug efflux pump BpeF [Burkholderia pseudomallei 1710a]
 gi|261827076|gb|ABM99293.2| multidrug efflux pump BpeF [Burkholderia mallei NCTC 10229]
          Length = 1061

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 154/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLAGMIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPNDSYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   T   +       N      + G          Q 
Sbjct: 176 QVQLWGAGDYAMRVWLDPQKVAQRNLTADDVVRAIREQNVQVAAGVIGASPTLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQNED-------------EFGDIVVKTAPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLAISDEVRKTMAELKQDFPAGVDYRIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL L G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLLFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLTARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGKTPFEAAVEASRLRLRPILMTSIAFIMGVVPLVLSTGAGAEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 89/253 (35%), Gaps = 12/253 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +            + + V+K
Sbjct: 252 IVVKTAPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLAISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 312 TMAELKQDFP-AGVDYRIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLIAVPVSIVGTFSLLLLFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIVVAASSS 812
           + R    K++ E  G  +  ++   A    L       G     FA+ +A   V++A +S
Sbjct: 428 TARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNS 487

Query: 813 IFIAAPILLFIYD 825
           + ++  +   +  
Sbjct: 488 LTLSPALSAILLK 500


>gi|320180451|gb|EFW55382.1| putative aminoglycoside efflux pump [Shigella boydii ATCC 9905]
          Length = 513

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/521 (11%), Positives = 141/521 (27%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVPQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLETIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATL 496



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 88/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLETIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPLKK 502


>gi|172064239|ref|YP_001811890.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           ambifaria MC40-6]
 gi|171996756|gb|ACB67674.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MC40-6]
          Length = 1066

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   +   +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLSAEDVVQSIREQNVQVAAGVIGASPSLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGIDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  L+   ++ +++I T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLGFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFK 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 RFNKVFHR 530



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+      G  +  +  I + FG+
Sbjct: 960  -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 90/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 252 IVVKTTPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  +L 
Sbjct: 312 TMAELKQDMP-AGIDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+    + +
Sbjct: 371 PLIAVPVSIIGTFSLLLGFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ESGM 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           + R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 428 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 487 SLTLSPALSAILLK 500


>gi|120403569|ref|YP_953398.1| preprotein translocase subunit SecF [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956387|gb|ABM13392.1| protein translocase subunit secF [Mycobacterium vanbaalenii PYR-1]
          Length = 423

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 141/320 (44%), Gaps = 13/320 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     A + M  R     +S +  + S+  +   G  +GIDF+GG ++ +  
Sbjct: 29  KHGFFVRLYTGTGAFEVMGKRKLWYTVSAVIILVSLGAMLLRGFTFGIDFEGGTKVSLPR 88

Query: 586 NRPVDLSVVRSNL--ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +     +     +  +++     +        +   +++ +  D+     + + +     
Sbjct: 89  SDAQATTSQVETVFTDTIGTPPEAVVVVGSGDSATFQIRSETLDNDQIVELRKALFDAFQ 148

Query: 644 EIVPLSTIQ----NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                        +   V      ++ +K ++ + +  +   IYI +R++ Y A+ A+ T
Sbjct: 149 PKGADGQPSEQAVSDSAVSETWGGQITQKALIALAVFLVLAAIYITVRYERYMAIAALAT 208

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISF 757
           L+ D+  T G +AL G E     V  +LT++G+S+ D V+V+D++ +N     +TT  +F
Sbjct: 209 LVFDLLVTAGVYALVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTDGFEHTTRRTF 268

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSS 812
            +  + ++N+T  RS+ TS+ + + ++ +      + G   +   A+    G++V   SS
Sbjct: 269 AEQANLAVNQTFMRSINTSLISVLPIIALMVIAVWLLGVGTLMDLALVQLVGVIVGTYSS 328

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           IF A P+L+ + +     ++
Sbjct: 329 IFFATPLLVSLRERTELVSK 348


>gi|258620819|ref|ZP_05715854.1| protein export protein SecD [Vibrio mimicus VM573]
 gi|258587017|gb|EEW11731.1| protein export protein SecD [Vibrio mimicus VM573]
          Length = 612

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 152/512 (29%), Positives = 261/512 (50%), Gaps = 25/512 (4%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            +   S+  ++   +  + I LGLDLRGG   +L VD D           D ++  L+ E
Sbjct: 113 TYSYVSVAPKWLDELGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRAE 172

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            +   S++ + N    +F     +    + V  +LQ        +  +   +      + 
Sbjct: 173 RLRGVSVQAVGND---AFDVKTQQPQALNHVRQYLQ--------ENYRGWDIRQGSDHLQ 221

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + 
Sbjct: 222 VQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKN 281

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA ++F++           F    L D +G   ++  +  +SG H+  A A  D  
Sbjct: 282 VIGATASLAFYEAKS--PTDARSFDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDNM 339

Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
               V        G            +    V R+         +    + +    Q+  
Sbjct: 340 GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSERVISVATIQSQL 399

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  GL 
Sbjct: 400 GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLA 459

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432
           + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N+
Sbjct: 460 MTLTFMALWYRRLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 519

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T+
Sbjct: 520 LIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTL 579

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GL +L SMF+ +   RA++  +      + + 
Sbjct: 580 GLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGLAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|170766986|ref|ZP_02901439.1| multidrug resistance protein MdtF [Escherichia albertii TW07627]
 gi|170124424|gb|EDS93355.1| multidrug resistance protein MdtF [Escherichia albertii TW07627]
          Length = 1037

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 149/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIILMLAGGLAIM-----NLPIAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVENSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEEVQQQGISVNKSSSSILMVAAFISENGSLNQYDIADYVASNIQDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLIPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANALETARAVKDELNHLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNIRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEDKLPPREATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSIFVAMSLTPALCATI 496



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 80/237 (33%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++   R ++     ++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALETARAVKDELNHLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  +     +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNIRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  R+   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEDKLPPREATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   SIF+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSIFVAMSL 488



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPAMEILGEAAAGKSTGDAMKFMAELVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVIGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPVEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|170726531|ref|YP_001760557.1| acriflavin resistance protein [Shewanella woodyi ATCC 51908]
 gi|169811878|gb|ACA86462.1| acriflavin resistance protein [Shewanella woodyi ATCC 51908]
          Length = 1030

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 71/637 (11%), Positives = 182/637 (28%), Gaps = 43/637 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISILLILFGLVA-----FDKLPLREYPNIDPPVV---------SIQTNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F   R  E  A+ V   + G
Sbjct: 55  SASVVESRITQLVEDRISGVEGIRHINSSSSDGRSTVTLEFDVGRDIEAAANDVRDRVSG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  + +   +      +  I+      D      ++ +    R   D++ + +   
Sbjct: 115 LLNNLPEEAEPPEVQKANGGDEVIMWLNLVSD--QMTTLQLTDYARRYLTDRLSVIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 NIRIGGGKVYAMRVWIDRQALAARNLTVADIEKVLRSENVELPAGSVESKERHFTVRVE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RSFRNPDDFANLVLSQGEDGYLIKLGDVAKVSVGAEEERITF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     + ++  +       A  L  ++               +      S   
Sbjct: 274 RGNREAMIGLGITKQSTANTLEVARAANALVDVINPTLPAGMEIKRSYDSSVFIEASVKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+IV+++ +   +  L+   ++ ++++ T  +L LLG T+ L ++  ++
Sbjct: 334 VYQTLFIAMTLVIIVIYLFLGSVRAMLIPAITVPVSLMATFIILYLLGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E I     +  +   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVVLENIHRRIEEGDTPLKAAYLGAREVAFAVVATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+ M  +++ S   A+++   M   +          ++ +D         
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSIVALTLSPMMCSKLLKPAGEDPWLVRQVDAGMNFVTEH 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +          G  + +  +  ++ +          + +G + L V   +      
Sbjct: 514 YKRILTKAMAHPYLIGSLVVVALACSALLVKEVPQEFAPKEDRGSMFLIVNGPQGASFEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           + S ++ ++   +        K  L+R     G    
Sbjct: 574 IESYMDEIETRLMPLVEAGEIKRLLIRAPRGFGSVAN 610



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 80/247 (32%), Gaps = 11/247 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L  V       +   I+F+        L   +    +++   R    +   I   +P 
Sbjct: 254 IKLGDVAKVSVGAEEERITFRGNREAMIGLGITKQSTANTLEVARAANALVDVINPTLPA 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                            +++    + I+   ++I I          L    T+ + +  T
Sbjct: 314 GMEIKRSYDSSVFIEASVKEVYQTLFIAMTLVIIVIYLFLGSVRAMLIPAITVPVSLMAT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   NL  + A++  IG  V+D +VV + +    +      +          E
Sbjct: 374 FIILYLLGYTINLLTLLAMILAIGMVVDDAIVVLENIH---RRIEEGDTPLKAAYLGARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V T++      +P+    G    +   FA+ M+  ++    SSI +A  +   + 
Sbjct: 431 VAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVI---FSSI-VALTLSPMMC 486

Query: 825 DWRAKNA 831
               K A
Sbjct: 487 SKLLKPA 493



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L    L G   N+ +   ++ L+G 
Sbjct: 860  VLALGIVFLVLAAQFESYVHPIVIMLTVPLATLGALVGLWLTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    I F   I ++ ++ L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGIEFEHAIIQASSQRLRPILMTGITTAAGAVPLVLAQGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G        + +  GIV+A   +IFI  
Sbjct: 977  GAETRFVIGVVVLSGIVLATLFTIFIIP 1004


>gi|331008327|gb|EGH88383.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 1054

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 184/688 (26%), Gaps = 50/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+   L        + +FP+  P               + ++   
Sbjct: 8   RPIFAWVLAIILMLAGIAAIL-----NLPVSQFPTIAPPT-------------IQIQSRY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   ++    +   S       Q  ITL+FA     +    +V  
Sbjct: 50  PGASASTVENTVTQVIEQQMRGLDHLMYMSSTSDDFGQAAITLTFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L    ++  +  T     +++           +  E +  +     D +   
Sbjct: 110 KLQLATPQLPQTVQQTGIEVTKSNSSTLLAVGFISADGSMNRDELANYVASNIQDPVSRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   Q     R    +    +P RL         ++      N    G   G        
Sbjct: 170 DGVGQVQLYGRQ-FAMRIWLNPLRLNNYKLNPTDVTNAIAAQNVQIAGGSLGGTPPAPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +   E    +        +       
Sbjct: 229 MLQATITEATLL-------------RTPTEFGNILLKVEPDGSQVRVKDVARVELGGEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +     E        L   + P  +    +        
Sbjct: 276 NYLTLYNGKPAAAIGVQLATGANALEVAERVRARVKELAPFAPPGVVIEYPQDTTPFVTD 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +    T      LV +++++ +   +  L+   ++ + ++ T A +  +G ++   S+
Sbjct: 336 AITGVFKTLIEGIVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAAMVAVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475
            G+VL IGL VD  I+V E +      +      +      +     I  + +   +   
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMVEEGLGPKEATRKAMGQITGALIGVAVVLGAVFVP 455

Query: 476 VLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSR 530
           V F  G  G   R F++T+ +++++S+ TA+ +  A+   +   +     K         
Sbjct: 456 VAFASGSVGAIYRQFSLTIVVAMVLSVLTAVILTPALCATMLKPVGRDHQKKTGFFGWFN 515

Query: 531 FFLIPDCIAIQFMRAR------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                          R       + +   +L        L         + +G I + V 
Sbjct: 516 RIFDRGQAHYHVGVQRVIRASSRYILLYVLLTGAAVFMFLRVPTGFLPDEDQGRIFVMVT 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                        L  +       +       + +     PG +     +   +K     
Sbjct: 576 TPPGATQERTSRALSDVSAYLREDEKDIVTSTWEINGYSFPGRAQTSGVIFVQMKAFEDR 635

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVG 672
           +      Q+          +     I  
Sbjct: 636 LGDAPRAQDLVNRLNARFADYKDANITA 663



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 76/238 (31%), Gaps = 8/238 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +  +            +        +++     +    K++    
Sbjct: 258 SQVRVKDVARVELGGEDYNYLTLYNGKPAAAIGVQLATGANALEVAERVRARVKELAPFA 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +            + I      +I   + + + +++  + +   L     + + + 
Sbjct: 318 PPGVVIEYPQDTTPFVTDAITGVFKTLIEGIVLVFLIMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N  ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAAMVAVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMVEEGLGPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
            + +  ++        +V     +    +      F++ +   +V++  +++ +   +
Sbjct: 436 GQ-ITGALIGVAVVLGAVFVPVAFASGSVGAIYRQFSLTIVVAMVLSVLTAVILTPAL 492



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 78/231 (33%), Gaps = 11/231 (4%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                 G    + + G     +      G S  Q         K              +  
Sbjct: 805  GEWIYGSPQLERYQGVPAVQINGNAADGYSTGQAMDAMEEVLKDLPEGISYAWTGISVQE 864

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIE 717
             + +     +  +   IS + + + +   ++ W   +  I  + L I   L    L G+E
Sbjct: 865  RQSAS----QAPIMYAISIVFVFLCLAALYESWSIPVSVILVVPLGILGALAAALLRGLE 920

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             ++    A+LT +G S  + +++ +  R        ++   +   ++    L   + TS+
Sbjct: 921  NDVFFQVALLTTVGLSAKNAILIVEFARDLQAQGRRAV---EAAIEAARLRLRPILMTSL 977

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            A  + VLP+      G +   +    +  G++ +   +IF+     + +  
Sbjct: 978  AFILGVLPLVFSSGAGSTSQNAIGTGVIGGMLASTFLAIFMTPLFFVLVSR 1028


>gi|148549543|ref|YP_001269645.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           putida F1]
 gi|148513601|gb|ABQ80461.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida F1]
          Length = 1050

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 61/548 (11%), Positives = 150/548 (27%), Gaps = 33/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIAVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L +   T   +       N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFENILLKVNKDGSQVRLGDVAQVGLGGENYAVSA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L     P    +           S S 
Sbjct: 280 QFNGKPASGLAVKLATGANALDTAKALRETIKSLEPFFPPGVKAVFPYDTTPVVTESISG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++ +S+  A+    A+   +++  K           F      
Sbjct: 460 GGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRN 519

Query: 538 IAIQFMRA 545
                   
Sbjct: 520 FDRSVNGY 527



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 89/247 (36%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   +S Q      + L        +++   + L    K +    
Sbjct: 258 SQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANALDTAKALRETIKSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   I  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +   
Sbjct: 436 EQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPLKK 502



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 71/185 (38%), Gaps = 10/185 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            E + +       L +       G     +L    +  +  +   + +++    +   W  
Sbjct: 837  EAMAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPAL-FALSVLFVFLCLAALYESWSI 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  + L I   L   +L G+  ++  +  +LT IG +  + +++ +  ++   L+ 
Sbjct: 896  PIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKE---LHE 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  D   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A 
Sbjct: 953  QGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISAT 1012

Query: 810  SSSIF 814
              +IF
Sbjct: 1013 VLAIF 1017


>gi|260596113|ref|YP_003208684.1| acriflavine resistance protein F [Cronobacter turicensis z3032]
 gi|260215290|emb|CBA27225.1| Acriflavine resistance protein F [Cronobacter turicensis z3032]
          Length = 1039

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/684 (10%), Positives = 185/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G L  L     Q  + ++P+  P                     
Sbjct: 7   QRPIFAWVLAIIMMMAGALAIL-----QLPIAQYPTIAPPAI---------AVSATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +        +TL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGGVTVTLTFTSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D  +    + +  +     D I  +   
Sbjct: 113 LAMPLLPQEVQQQGVSVEKSSSSYLLVAGFISDNPLLTQEDIADYVSSDVKDTISRTNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D   +     T   +       NN       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDTHAMNNYQLTPLDVINQLKAQNNQIAAGQLGGTPAVPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +    +        +        I          
Sbjct: 232 ASIIAQTRL-------------KDPQEFGRVMLKVNPDGSQVRLRDVARIELGGENYNML 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                +   T +      A L+         +           S  
Sbjct: 279 TKINGQPATGLGIKLATGANALDTAKAIKTTLADLQHYFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +      +      +  +  S+    +    +      V + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMAEEKLPPKEATQLSMSQIQGALVGIAMVLSAVFVPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSIDIN 526
           FGG      R F++T+  S+ +S+  A+ +  A+   +++           K     +  
Sbjct: 459 FGGSTGAIYRQFSVTIVSSMALSVLVALILTPALCATLLKPAADDHHEKKAKFFVWFNAR 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +     +   + +   ++ +  ++  +         + +G     V   
Sbjct: 519 FDLSVNHYTQSVGGILHKTGRYLLLYLLIVAGMTVLFVRLPTSFLPEEDQGVFMTMVQLP 578

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +  +  L+ +    ++ +  + +  F V      G           +K       
Sbjct: 579 SGATQARTQQLLDQVTHYYLNDEKANVDSVFTVSGFSFSGQGQNAGIAFISLKPWEERPG 638

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
             +++            +L    +
Sbjct: 639 HENSVGAIVSRASHAFGKLQDGLV 662



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 87/255 (34%), Gaps = 11/255 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  ++  +        L        +++   + ++     +    
Sbjct: 258 SQVRLRDVARIELGGENYNMLTKINGQPATGLGIKLATGANALDTAKAIKTTLADLQHYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + + + + +++  +     L     + + + 
Sbjct: 318 PQGMKVVYPYDTTPFVKISIHEVVKTLFEAIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++    S+
Sbjct: 378 GTFAVLAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEKLPPKEATQLSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  V  +M      +PMA +GGS       F++ +   + ++   ++ +   +   
Sbjct: 436 SQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSVTIVSSMALSVLVALILTPALCAT 495

Query: 823 I-----YDWRAKNAR 832
           +      D   K A+
Sbjct: 496 LLKPAADDHHEKKAK 510



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 68/184 (36%), Gaps = 7/184 (3%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS + + + +   ++ W      +  + L I   L  
Sbjct: 855  GYDWTGLSYQERLSGNQAPALYAISLVVVFLCLAALYESWSIPFSVMLVVPLGIIGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +L G+  ++     +LT IG S  + +++ +  +  M+      S  D   +++   L 
Sbjct: 915  ASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKE--GRSLTDATLEAVRLRLR 972

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + TS+A  + VLP+ +    G     +    +  G++ A   +IF      + I    
Sbjct: 973  PILMTSLAFILGVLPLVLNRGAGSGAQNAVGTGVMGGMLSATLLAIFFVPVFFVVIRRRF 1032

Query: 828  AKNA 831
             K  
Sbjct: 1033 MKPN 1036


>gi|205355840|ref|ZP_03222609.1| protein export membrane protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205346274|gb|EDZ32908.1| protein export membrane protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 526

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 289/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++  +   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSE---------RGAKINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 52  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIAKVENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + + +      I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------KGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTVAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS 218

Query: 232 ------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++ PV++ + +  G+++F + 
Sbjct: 219 YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGIGDKSNYPVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 459 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRR 526



 Score =  107 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ +++++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGV-AGIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRVSIEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      K+ 
Sbjct: 458 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSN 515


>gi|295677553|ref|YP_003606077.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1002]
 gi|295437396|gb|ADG16566.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1002]
          Length = 1076

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/575 (12%), Positives = 155/575 (26%), Gaps = 46/575 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL            + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIILMLAGLASVF-----TLPIAQYPTIAPPA-------------IQISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAETVQNTVTQVIEQQMSGLDHLLYLASTSDDSGTATITLTFAAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++     T      +++          +  + +  +     D I   
Sbjct: 110 KLQLATPLLPQAVQQLGTRVTKSSSSFLLVMAFVSTDGSMNKYDLANYVASNIQDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    D ++L     T   +       N    G   G        
Sbjct: 170 DGVGTVTLFGSQ-YAMRVWLDANKLNNFSLTPLDVETALQAQNVQVAGGALGGTPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +     +                 +    +        +       +I       
Sbjct: 229 VLQATITQATLL-------------NTPEQFGNILLKVNQDGSQVRLRDVSHIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +      A L        +             
Sbjct: 276 NFDTKYNGQPTAGFGIQLATGANALATAKAVRTKIAELSKYFPHGLVVQYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++S++G ++ + S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMSVVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMQEEGLSPREATRKAMDQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I      +   
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALVLTPALCATI-----LKPIPKGHHEKATG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                   F R+R             S   L  + 
Sbjct: 511 FFGWFNRTFNRSRDKYHSGVHHVIKRSGRWLIIYM 545



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 83/247 (33%), Gaps = 8/247 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V       +        +   G    + ++G  +  ++    PG S  Q  V        
Sbjct: 790  VRNGAGAMVPFSAFTNTAWTFGSPKLERYNGIPSVEIQGAAAPGKSTGQAMVAMEQIVTK 849

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +   +   +      + +++  + +     +   W      I  + L
Sbjct: 850  LPAGVGYEWTGLSLQERQSGSQAPILYGISILVVFLCLA---ALYESWSIPFSVIMVVPL 906

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    L G+E ++     +LT +G S  + +++ +  R+     +  +   +   
Sbjct: 907  GVIGALLAATLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARE--LQQSEGMGPIEAAL 964

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + VLP+A+    G +   +    +  G++ A   +IF+    
Sbjct: 965  EAARLRLRPILMTSLAFILGVLPLAISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMF 1024

Query: 820  LLFIYDW 826
             + I   
Sbjct: 1025 FVVIRAK 1031



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 52/409 (12%), Positives = 131/409 (32%), Gaps = 19/409 (4%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L  L +T      A I L      + +I   +   +       +  ++    +R    + 
Sbjct: 75  LLYLASTSDDSGTATITLTFAAGTNPDIAQVQVQNKLQLATPLLPQAVQQLGTR----VT 130

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSIL-------ISMFTAISIVRAMMIFIIRY 517
            S+ + L+    +   G       A  +  +I              +   +  M   +  
Sbjct: 131 KSSSSFLLVMAFVSTDGSMNKYDLANYVASNIQDPISRIDGVGTVTLFGSQYAMRVWLDA 190

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
            K+ +  + PL     +          A   G   S+   +    +     LN    F  
Sbjct: 191 NKLNNFSLTPLDVETALQAQNVQVAGGA--LGGTPSVPGQVLQATITQATLLNTPEQFGN 248

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            +         V L  V       +  +   +                 +++A  + +  
Sbjct: 249 ILLKVNQDGSQVRLRDVSHIELGGENYNFDTKYNGQPTAGFGIQLATGANALATAKAVRT 308

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
              ++++  P   +           R  I + +  ++   + + + +++  +     L  
Sbjct: 309 KIAELSKYFPHGLVVQYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIP 368

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + + +  T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +S
Sbjct: 369 TIAVPVVLLGTFAIMSVVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMQEEGLS 426

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
            R+   K++++  G  V  ++      +P+A  GGSV      F++ + 
Sbjct: 427 PREATRKAMDQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIV 475



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 68/520 (13%), Positives = 139/520 (26%), Gaps = 28/520 (5%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         L     G +       
Sbjct: 536  RSGRWLIIYMVVIFAVGLLFV------RLPKSFLPDEDQGTMFVLVQTPSGSTQETTAHA 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              D  +  L      + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LKDVSDYLLNEEKAIVESTFTVNGFSFAGRGQNAGLVFVRMKDYAQRQHADQKVQALVGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +    +      ++       I  + +    D  +          + +  + +    +  
Sbjct: 650  LYMHFSSYKNA-VVFPVNPPSIPELGTAAGFDFQLQDRAGLGHAKLMEARNMLLGLAAKD 708

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
              L   R        Q    +     +   +S   +    S       V+   D+DG   
Sbjct: 709  PTLAQVRPNGLNDTPQFKVSIDHEKASALGVSLASIDQTFSIAWASAYVQNFLDTDGRI- 767

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                KV + G               + V                   N           R
Sbjct: 768  ---KKVYLQGDAPFRMKP-------EDVNAWFVRNGAGAMVPFSAFTNTAWTFGSPKLER 817

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                P +     +   + +G   +    I+  +            ++ER  G      S 
Sbjct: 818  YNGIPSVEIQGAAAPGKSTGQAMVAMEQIVTKLPAGVGYEWTGLSLQERQSG------SQ 871

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  I   +V + L  +             + L VI  L   +L G    +    G++
Sbjct: 872  APILYGISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLL 931

Query: 422  LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +GL+  + IL+ E  RE +  +      +           I  +++  ++  + L   
Sbjct: 932  TTVGLSAKNAILIVEFARELQQSEGMGPIEAALEAARLRLRPILMTSLAFILGVLPLAIS 991

Query: 481  ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
               G  +       +   +L + F AI ++    + I   
Sbjct: 992  NGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVVIRAK 1031


>gi|119355884|ref|YP_910528.1| preprotein translocase subunit SecF [Chlorobium phaeobacteroides
           DSM 266]
 gi|119353233|gb|ABL64104.1| protein translocase subunit secF [Chlorobium phaeobacteroides DSM
           266]
          Length = 311

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 158/309 (51%), Gaps = 11/309 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I    +  F++ R     IS+   +  I  LF  GLNYGIDF+GG ++ +   + +D+
Sbjct: 1   MRIFHKTSFDFIKYRKISYAISVFLLLIGIGSLFVKGLNYGIDFRGGSEVLIRFEKNIDV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + VRS L++  +     Q    +++FL    +    +  ++ +   +  ++        I
Sbjct: 61  AAVRSVLDNTGMSGTLKQY-GLDRSFLFSTAFNGQTNELKSLISNSLNDRLK--GNPHEI 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP I+ +L    +  ++ + +A+L+Y+ IRF+  FA   +  +  DI   LG F
Sbjct: 118 VRIDAVGPSIASDLKWSALKALLAALLAILLYVGIRFEIKFATAGVVAIFHDIFVVLGLF 177

Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           +L G       +E + + +AA LT+ GYS+ D VVVYDR+R+ ++       +  + ++S
Sbjct: 178 SLLGGVFDFMPLELDQSIIAAFLTIAGYSITDTVVVYDRIRERIR-GQKPADYERIFNES 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +N+TL R++ TS    ISVL + V+ G  I  FA  +  G+ +   SSIF+AAPI+    
Sbjct: 237 MNQTLSRTIITSGTLLISVLVLFVFAGPAIRGFAFAVFMGVFIGTYSSIFVAAPIVYDWL 296

Query: 825 DWRAKNARI 833
                + ++
Sbjct: 297 KLTKSSVKL 305


>gi|254458350|ref|ZP_05071776.1| protein-export membrane protein SecD [Campylobacterales bacterium
           GD 1]
 gi|207085186|gb|EDZ62472.1| protein-export membrane protein SecD [Campylobacterales bacterium
           GD 1]
          Length = 527

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 165/545 (30%), Positives = 293/545 (53%), Gaps = 37/545 (6%)

Query: 1   MR-NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           MR    + ++++++    GL  + P+ L               +++LGLDL+GG H++L 
Sbjct: 5   MRMKLNYRIVIFALSIVFGLFFSAPSLLQLQDG---------KKVTLGLDLQGGLHMLLG 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           V  ++     ++  +  ++ F  ++ I V +++  ++ I+ S  D+   + + + ++   
Sbjct: 56  VKTEEATKSRIKSIAASVKHFSDRKDILVDALKFDESSISFSLLDADDTKAMKEFLSEI- 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                         + ++   +  S+ L+   I +    AI+Q++E IR R+DQ G++E 
Sbjct: 115 ------------DGVNLSVNAENFSLSLTPAEIIKTEKLAIDQAIETIRNRLDQFGLAEP 162

Query: 180 TIQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMF 228
            + R G  +IL+QL G +      R R+L+   AK+    V           +      +
Sbjct: 163 VVARQGEEKILVQLAGIKTQEEEQRARELISRAAKLELMAVDEDRDARVNSMSDSDASAY 222

Query: 229 GVRFLRD--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
           G   L D      +YLV +   + G  L    +    + ++P+++   +  GA  F + T
Sbjct: 223 GDVILEDVKDSRRKYLVREIPILDGGMLTD-ASMGFDQNNRPLINFKLNAEGAEIFGDFT 281

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
             ++GK LAVVLDG+V +AP IN+ I  G  QISGN+T+  A  LA  LR+G+L   + +
Sbjct: 282 GKSVGKRLAVVLDGKVYSAPNINERIGGGAGQISGNYTVMEAKDLAIALRSGALLAPIYL 341

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +E+R+VG  LG+DSI     A++ G +L+++FM+V Y   G++A+ ++  N+ + LA++S
Sbjct: 342 MEKRSVGPSLGADSIKASMIALIGGFILVIIFMVVYYRMAGVIANIALIANLFIILAVMS 401

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           L GATLTLP +AGIVL +G+AVD+N++++ERIRE   + +S+  +++ G+S A   I D+
Sbjct: 402 LFGATLTLPGMAGIVLTVGMAVDANVIISERIRELIYEGKSMHKAIEDGYSNAMRAILDA 461

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           NIT LIA VVL+ +G GA++GFA+T+ + IL SM TAI     +   +    +    +  
Sbjct: 462 NITTLIAAVVLYAYGTGAIKGFAVTISIGILASMLTAILGTHGIYEMLESRIQKSKNNRF 521

Query: 527 PLSRF 531
                
Sbjct: 522 WFGIK 526



 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 82/182 (45%), Gaps = 4/182 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            +     VGP +  + I+  ++ +I   I ++I++ + ++    + A   LI ++   L 
Sbjct: 340 YLMEKRSVGPSLGADSIKASMIALIGGFILVIIFMVVYYRM-AGVIANIALIANLFIILA 398

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             +LFG    L  +A ++  +G +V+  V++ +R+R+ +       S    I+   +  +
Sbjct: 399 VMSLFGATLTLPGMAGIVLTVGMAVDANVIISERIRELIYE---GKSMHKAIEDGYSNAM 455

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  ++   I+ + +  +G   I  FA+ ++ GI+ +  ++I     I   +     K
Sbjct: 456 RAILDANITTLIAAVVLYAYGTGAIKGFAVTISIGILASMLTAILGTHGIYEMLESRIQK 515

Query: 830 NA 831
           + 
Sbjct: 516 SK 517


>gi|83718161|ref|YP_440293.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis E264]
 gi|167617018|ref|ZP_02385649.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis Bt4]
 gi|83651986|gb|ABC36050.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis E264]
          Length = 1061

 Score =  192 bits (486), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 154/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVVILLAGMIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPNDSYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   T   +       N      + G          Q 
Sbjct: 176 QVQLWGAGDYAMRVWLDPQKVAQRNLTADDVVRAIREQNVQVAAGVIGASPTLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQNED-------------EFGDIVVKTAPDGGVTRLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLAISDEVRKTMAELKQDFPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL L G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLLFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLTARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGKTPFEAAVEASRLRLRPILMTSIAFIMGVVPLVLSTGAGAEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 89/253 (35%), Gaps = 12/253 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +            + + V+K
Sbjct: 252 IVVKTAPDGGVTRLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLAISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 312 TMAELKQDFP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLIAVPVSIVGTFSLLLLFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIVVAASSS 812
           + R    K++ E  G  +  ++   A    L       G     FA+ +A   V++A +S
Sbjct: 428 TARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNS 487

Query: 813 IFIAAPILLFIYD 825
           + ++  +   +  
Sbjct: 488 LTLSPALSAILLK 500


>gi|91794949|ref|YP_564600.1| hydrophobe/amphiphile efflux-1 HAE1 [Shewanella denitrificans
           OS217]
 gi|91716951|gb|ABE56877.1| Hydrophobe/amphiphile efflux-1 HAE1 [Shewanella denitrificans
           OS217]
          Length = 1046

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 69/585 (11%), Positives = 160/585 (27%), Gaps = 43/585 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++PS  P               +V+  + 
Sbjct: 8   RPIFAWVIAMIIMLAGILAI-----KDLPISQYPSIAPPT-------------VVIAANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S      +ITL+F      +    +V  
Sbjct: 50  PGASAKTMEDTVTQVIEQRMTGLDHLRYISSTSDSFGNAQITLTFNAEADADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + +   +  +      +++     +       + +  +     D +   
Sbjct: 110 KLQSAMPLLPQEVQAQGVNVSKSSSGFLMVLGFVSENSNLDKTDIADYVAANIQDPMSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L Q   T+  +       N        G        
Sbjct: 170 PGVGDIQLFGAQ-YAMRIWLDPLKLTQYKLTSVDIIAAIREQNAQVSAGQLGGAPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I          +      +       
Sbjct: 229 ELNATVSAQSRL-------------KTVAEFQRIILKSSTTGANVYLEDVARVELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           S     +   T          L          +           
Sbjct: 276 SVVSFYNGKPAVGLAVSLATGANALDTAAAVRSKIDELTPFFPQGMTVVYPYDTTPFVTE 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +++++ +   +  L+   ++ + ++ T A+LS+ G ++   ++
Sbjct: 336 SITGVVHTLLEAVVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSMAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
           + F  G      + F+IT+  ++ +S+  AI +  A+   +     K    I+      F
Sbjct: 456 MAFMAGSTGVIYKQFSITIVSAMALSVLVAIVLTPALCATMLKPIKKGHTHIETGFFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
               D +   + R     +  S+   +  + ++   G  +     
Sbjct: 516 NRTFDKMTSGYQRNVASILKRSVRVMMIYLGIVIAVGWIFMRMPT 560



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 82/250 (32%), Gaps = 6/250 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V       +   +           L        +++     +     ++T
Sbjct: 255 TTGANVYLEDVARVELGAESYSVVSFYNGKPAVGLAVSLATGANALDTAAAVRSKIDELT 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                E I   +  ++ + + + + +++  + +   L     + +
Sbjct: 315 PFFPQGMTVVYPYDTTPFVTESITGVVHTLLEAVVLVFVIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    ++ G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAILSMAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPLEATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F+I +   + ++   +I +   +
Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMAGSTGVIYKQFSITIVSAMALSVLVAIVLTPAL 492

Query: 820 LLFIYDWRAK 829
              +     K
Sbjct: 493 CATMLKPIKK 502



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 77/266 (28%), Gaps = 11/266 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +       V  S   +         +   N     N           
Sbjct: 776  QYRMQTADLDTWYVRNSQGEMVPFSAFATGKWEFGSPQLQRFNGLSAVNIQGATAAGVST 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   +  MV+K            + E              +  + I  +  L+   + 
Sbjct: 836  GDAMAAIEAMVEKLPAGFGIQWNGMSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 890

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W   L  +  + L I   L    + G+  ++     +LT +G +  + +++ +  +  
Sbjct: 891  ESWTVPLAVVLVVPLGIIGALIAMNVRGLSNDVFFQVGLLTTVGLATKNAILIVEFAK-- 948

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
             K Y       +    ++   L   + TS+A  + VLP+A+    G     +    +  G
Sbjct: 949  -KYYEQGGGLVESTLHAVKVRLRPILMTSLAFGLGVLPLAISTGVGSGSQNAIGTGVLGG 1007

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            +V +    IF      + +    +K 
Sbjct: 1008 MVSSTFLGIFFVPLFFVIVERIFSKK 1033


>gi|86150339|ref|ZP_01068565.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85839164|gb|EAQ56427.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 526

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 289/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++  +   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSE---------RGAKINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 52  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIAKVENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + + +      I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------KGINIQSENMHYKISFTSKEVKNIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTVAKQGDDKILVELAGIKTKEDELRAKERIIKAAHLQLMEVDDSKMGQASTMSDAEAAS 218

Query: 232 ------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++ PV++ + +  G+++F + 
Sbjct: 219 YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 459 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKNNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRR 526



 Score =  108 bits (268), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ +++++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGV-AGIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRVSIEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      KN 
Sbjct: 458 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKNN 515


>gi|120610788|ref|YP_970466.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acidovorax
           citrulli AAC00-1]
 gi|120589252|gb|ABM32692.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax citrulli AAC00-1]
          Length = 1069

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 153/552 (27%), Gaps = 33/552 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +           L+++P   P                +     
Sbjct: 8   RPIFAWVIAIVIMLAGAMSI-----RNLPLEQYPDIAPPRV---------SISAIYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L        +      ++ TL+F      +    +V   LQ 
Sbjct: 54  AKTVEESVTQVIEQQLKGLDNLIYMGSTSDASGSSRTTLTFNAGTNIDVAQVQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   +  T      +++            ++    I    +D I   +   
Sbjct: 114 AMSRLPPAVQSRGVTVTKGGNDYLMIVSFTSPDPSVTQVDIGDYISSNLVDVISRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L +     + +       N        G            
Sbjct: 174 DVATFGTP-YAMRVWMDPAKLEKYALMPSDVGSAINAQNAQVSAGQLGALPAVGGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 I      +    
Sbjct: 233 TITARSKL-------------QSRAEFENIVLKVATDGSVVRLKDVARIELGAENLTITS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     E      A LR                     S   
Sbjct: 280 RLNGRPGAGMGVVLADGANAMAVAEAVNAKIAELRPFFPYQLKPFTSYDTTPFVEASIDE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A    LV++V+++ +   +  L+   ++ + ++ T  +LS  G ++   ++ G+V
Sbjct: 340 VVKALAEAMVLVVLVMYLFLQNFRATLIPAIAVPVVLLGTFGVLSAAGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  +   +     +     +    +T     + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLTPKEATRKSMAEITPALVGIALTLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++++S+  A+++  A+   +++     +   +           
Sbjct: 460 GGSTGVIYRQFSITVVSAMVLSVLVALTLTPALCATLLKPIPKGAHSPHGGVPRRGPLGW 519

Query: 538 IAIQFMRARFWG 549
           +   F       
Sbjct: 520 LDRFFAGFNRRF 531



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   I+ +        +  +     +++A    +     ++    P 
Sbjct: 260 VRLKDVARIELGAENLTITSRLNGRPGAGMGVVLADGANAMAVAEAVNAKIAELRPFFPY 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                T           I + +  +  + + +++ +++  + +   L     + + +  T
Sbjct: 320 QLKPFTSYDTTPFVEASIDEVVKALAEAMVLVVLVMYLFLQNFRATLIPAIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  +  G   N   +  ++  IG  V+D +VV + +     +    ++ ++   KS+ E
Sbjct: 380 FGVLSAAGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMSEEGLTPKEATRKSMAE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V  ++      +PMA +GGS       F+I +   +V++   ++ +   +   + 
Sbjct: 438 ITPALVGIALTLSAVFIPMAFFGGSTGVIYRQFSITVVSAMVLSVLVALTLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 83/267 (31%), Gaps = 11/267 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                     G   +     + V  S   S   +     +   N      F+         
Sbjct: 783  PYRMLPQDIGPWTVRNNQGQMVPFSAFSSTNWTYGSPQLQRYNGSPSYEFVGDAAPGVSS 842

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   V E++K+    I    T  + +         L+    + ++   + +     + 
Sbjct: 843  GAAMAAVDEIMKQMPPGIGYEWTGASYQERLSGSQAPLLYA--ISILFVFLCLA---ALY 897

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L I   L    + G+  ++     +LT +G +  + +++ +     
Sbjct: 898  ESWSVPFSVILVVPLGIVGALLGIGIRGLSNDVYFQVGLLTTVGLASKNAILIVEFA--- 954

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFG 804
             +L     S  D   +++   L   + TS+A    VLP+      G     +    +  G
Sbjct: 955  TQLQAAGRSVIDATLEAVRLRLRPILMTSLAFGFGVLPLAIGTGAGAGGRQAIGTAVLGG 1014

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            +V A    IF      + I  + A+  
Sbjct: 1015 MVSATVLGIFFVPVFFVLIRGFFARRG 1041


>gi|226941049|ref|YP_002796123.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Laribacter hongkongensis HLHK9]
 gi|226715976|gb|ACO75114.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Laribacter hongkongensis HLHK9]
          Length = 1065

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 78/669 (11%), Positives = 176/669 (26%), Gaps = 52/669 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        + ++P   P               + +    
Sbjct: 8   RPIFAWVIAIVIMLAGALSVL-----NLPVAQYPQIAPPT-------------VQISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S      +ITL+F  +   +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQNMKGIDHLTYMSSTSDSSGSVEITLTFDANTNPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +  T      +++     +       + +  I     D I   
Sbjct: 110 KLSLATPLLPQEVQRQGITVTKSATNFLMVMGFVSEDGSMSNTDLADYIAANVQDIIARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP+RL+Q   T A +       N        G        
Sbjct: 170 PGVGEVNLFGSQ-YAMRIWLDPARLQQYALTPADIRNAIQAQNAQVSAGQLGGTPALPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    +          +      +       
Sbjct: 229 QLNATVTAQSRL-------------KTPAEFENILLRSTGNGANVYLKDVAKVELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L+         +V          
Sbjct: 276 SHIARFNGKPAAGLGIKLATGANALDTAAALKAKVQDLQTFMPQGMKVVVPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L   G ++   ++
Sbjct: 336 SIESVVQTLFEAVILVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGVLFAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMDQITGALIGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  ++++S+  A+ +  A+   +     +K +     S    
Sbjct: 456 MAFFGGSTGVIYRQFSVTIVSAMVLSVIIALVLTPALCATL-----LKPVAKGHSSAESS 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           I   I I+F R      G +   +   I     + + YG+   G   + +          
Sbjct: 511 IFGRIFIRFNRWLERLNGGTQNMASRMISRSVRYMVIYGLIVAGMAVMFMRLPSSFLPDE 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                    +     Q   G          +  +        + V    +          
Sbjct: 571 ------DQGMMFTMVQLPAGATQERTMEVVKQVEKHFLENETDSVASIFSVAGFSFAGNG 624

Query: 654 TEIVGPKIS 662
             +    + 
Sbjct: 625 QNMALGFVG 633



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 86/242 (35%), Gaps = 6/242 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +      +        L        +++     L+   + +   +P
Sbjct: 259 NVYLKDVAKVELGSESYSHIARFNGKPAAGLGIKLATGANALDTAAALKAKVQDLQTFMP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          +  I   +  +  + I + + +++  + +   L     + + +  
Sbjct: 319 QGMKVVVPYDTTPFVKLSIESVVQTLFEAVILVFVVMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G    FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS++
Sbjct: 379 TFGVLFAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMD 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  +  ++      +PMA +GGS       F++ +   +V++   ++ +   +   +
Sbjct: 437 QITGALIGIALVLSAVFVPMAFFGGSTGVIYRQFSVTIVSAMVLSVIIALVLTPALCATL 496

Query: 824 YD 825
             
Sbjct: 497 LK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 80/260 (30%), Gaps = 13/260 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +       V  S   S   +     +   N         +         
Sbjct: 782  RMLPEDLNKWYVRNSTGEMVPFSAFASAHWTYGSPRLERYNGLPSVQIQGQAAPGHSTGE 841

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   + ++V +    I    T  + +         ++        +S + + + +   ++
Sbjct: 842  AMLAMEQLVAQLPAGIGYEWTGLSYQERMAGSQAPMLY------ALSILVIFLCLAALYE 895

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L I   L    LF +  ++     +LT IG +  + +++ +  +   
Sbjct: 896  SWSIPFSVMLVVPLGIIGALAAAMLFKLSNDVYFQVGLLTTIGLASKNAILIVEFAKD-- 953

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L  +  S       ++   L   + TS A  + VLP+A+    G     +  I +  G+
Sbjct: 954  -LAASGHSLLSAALTAVRLRLRPILMTSFAFILGVLPLAISNGAGAGAQNALGIGVIGGM 1012

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +     ++       + I  
Sbjct: 1013 ITGTVLAVIFVPLFFVVIRR 1032


>gi|307747995|gb|ADN91265.1| Protein-export membrane protein secD [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315932231|gb|EFV11174.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 526

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 289/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++  +   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSE---------RGAKINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 52  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIAKVENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + + +      I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------KGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTVAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS 218

Query: 236 ----------SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++ PV++ + +  G+++F + 
Sbjct: 219 YGLILVSDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGVAGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 459 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRR 526



 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ ++I++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGV-AGIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRASIEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      K+ 
Sbjct: 458 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSN 515


>gi|256823485|ref|YP_003147448.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Kangiella
           koreensis DSM 16069]
 gi|256797024|gb|ACV27680.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Kangiella koreensis DSM 16069]
          Length = 1046

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/598 (11%), Positives = 166/598 (27%), Gaps = 33/598 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           +  +P   P              +       
Sbjct: 8   RPIFAWVISLLILLGGTLAV-----QNLPIMAYPDISPPQVT---------INATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++          +   + I L+FA     +    +V   L+ 
Sbjct: 54  AKVIEDTVTSVIEEEMNGIEGLRYIKSESSRTGTSTIILTFATGTDTDIAGVEVQNRLKR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    +   +     +   +++           A +    I R  + ++   +   
Sbjct: 114 VEARLPSSVRTQGVNIDKTRPDFLMVVSLYSPNGSHDATDLGDYIDRAILGEMRRIDGIG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T  +++      N        G     D      
Sbjct: 174 SAQLF-SATYAMRIWVDPKKMASFAITADEIAQAIRNQNAQLATGELGSLPAPDKQQINA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +                 +    I                 + +         
Sbjct: 233 TILVPSRL-------------NTPEQFGDIILRSSSEGAIVRLKDVAMVERGANSYTAQA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     E      A L          +V          S   
Sbjct: 280 FLNGQESAAFALKLSNTGNALEAAEAVKAKMAELEQYFPDDMSWVVPYDTSIFIDESIGQ 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++    + +++I T   L LLG ++ + ++  +V
Sbjct: 340 VLQTLIEAVFLVTLVMFLFLQSWRTTIIPLIVVPVSLIGTGMGLYLLGYSINMLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E I+    + +   + +      +    I  +    +   + + FF
Sbjct: 400 LAIGIVVDDAIIVVENIKRIIDQEKLGPYQATKKAMKQISGAIIGTTAVLIAVFIPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + F++T+ LS+ IS F ++S+  A+    ++ +  +  +      F    + 
Sbjct: 460 SGSVGRIYQQFSLTIVLSVSISAFLSLSLSPAIAQGFLKTETKEKKEWAFFRWFNQGFNW 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +M                +I ++    + +         +       +  S + 
Sbjct: 520 FTETYMSQEEKLFNKRGQLITMAIFVVICGLVGWRFASMPTGFVPSEDQGFIVSSSLM 577



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 82/207 (39%), Gaps = 8/207 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +  +++   + +      +T I   +   ++++  I  V +  + M +++    
Sbjct: 304 EAVKAKMAELEQYFPDDMSWVVPYDTSIFIDESIGQVLQTLIEAVFLVTLVMFLFLQ--- 360

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  +  + + +  T     L G   N+  + A++  IG  V+D ++V + ++   
Sbjct: 361 SWRTTIIPLIVVPVSLIGTGMGLYLLGYSINMLTMFAMVLAIGIVVDDAIIVVENIK--R 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
            +    +       K++ +  G  + T+       +PMA + GSV      F++ +   +
Sbjct: 419 IIDQEKLGPYQATKKAMKQISGAIIGTTAVLIAVFIPMAFFSGSVGRIYQQFSLTIVLSV 478

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++A  S+ ++  I         K  +
Sbjct: 479 SISAFLSLSLSPAIAQGFLKTETKEKK 505



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 85/255 (33%), Gaps = 10/255 (3%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             + V  ++   +++                 ++G  +  +     PG S  +   L    
Sbjct: 783  TMQVRNDQGDLVNLSEVAKAQWTEAPAKLTRYNGSPSLPITGSGSPGVSSGEVLALMEEF 842

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +              +       +     ++  +   +  L+   +   W   L  I  
Sbjct: 843  AQTLPKGLGYEWSGQSLEEKVAGNQTT---LLFSLSFLVIFLVLAALYESWSVPLSVILV 899

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
              L I  ++    + G+  ++     ++T+IG S  + +++ +  R+         S  +
Sbjct: 900  APLGILGSIIAAFIGGLPNDIYFKVGLITIIGLSAKNAILIVEFARE---AEGEGKSPLE 956

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             + ++    L   + TS+A  + VLP+ +    G +   +    +  G++ AA  +I I 
Sbjct: 957  AVTEACRLRLRPILMTSLAFVMGVLPLVLATGAGSASRQAIGTSVVGGMISAAILAI-IF 1015

Query: 817  APILLFIYDWRAKNA 831
             P+   +        
Sbjct: 1016 VPVFYLLVRKIFPRK 1030


>gi|283956490|ref|ZP_06373970.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792210|gb|EFC30999.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 526

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 289/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++  +   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKINYRLIIFIAVFIFGVTFSLPSFLQSE---------RGAKINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 52  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIAKVENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + + +      I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------KGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTVAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS 218

Query: 232 ------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++ PV++ + +  G+++F + 
Sbjct: 219 YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGVAGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 459 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRR 526



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ ++I++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGV-AGIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRASIEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      K+ 
Sbjct: 458 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSN 515


>gi|257484257|ref|ZP_05638298.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 1054

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 184/688 (26%), Gaps = 50/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+   L        + +FP+  P               + ++   
Sbjct: 8   RPIFAWVLAIILMLAGIAAIL-----NLPVSQFPTIAPPT-------------IQIQSRY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   ++    +   S       Q  ITL+FA     +    +V  
Sbjct: 50  PGASASTVENTVTQVIEQQMRGLDHLMYMSSTSDDFGQAAITLTFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L    ++  +  T     +++           +  E +  +     D +   
Sbjct: 110 KLQLATPQLPQTVQQTGIEVTKSNSSTLLAVGFISADGSMNRDELANYVASNIQDPVSRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   Q     R    +    +P RL         ++      N    G   G        
Sbjct: 170 DGVGQVQLYGRQ-FAMRIWLNPLRLNNYKLNPTDVTNAIAAQNVQIAGGSLGGTPPAPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +   E    +        +       
Sbjct: 229 MLQATITEATLL-------------RTPTEFGNILLKVEPDGSQVRVKDVARVELGGEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +     E        L   + P  +    +        
Sbjct: 276 NYLTLYNGKPAAAIGVQLATGANALEVAERVRARVKELAPFAPPGVVIEYPQDTTPFVTD 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +    T      LV +++++ +   +  L+   ++ + ++ T A +  +G ++   S+
Sbjct: 336 AITGVFKTLIEGIVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAAMVAVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475
            G+VL IGL VD  I+V E +      +      +      +     I  + +   +   
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMVEEGLGPKEATRKAMGQITGALIGVAVVLGAVFVP 455

Query: 476 VLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSR 530
           V F  G  G   R F++T+ +++++S+ TA+ +  A+   +   +     K         
Sbjct: 456 VAFASGSVGAIYRQFSLTIVVAMVLSVLTAVILTPALCATMLKPVGRDHQKKTGFFGWFN 515

Query: 531 FFLIPDCIAIQFMRAR------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                          R       + +   +L        L         + +G I + V 
Sbjct: 516 RIFDRGQAHYHVGVQRVIRASSRYILLYVLLTGAAVFMFLRVPTGFLPDEDQGRIFVMVT 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                        L  +       +       + +     PG +     +   +K     
Sbjct: 576 TPPGATQERTSRALSDVSAYLREDEKDIVTSTWEINGYSFPGRAQTSGVIFVQMKAFEDR 635

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVG 672
           +      Q+          +     I  
Sbjct: 636 LGDAPRAQDLVNRLNARFADYKDANITA 663



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/238 (8%), Positives = 76/238 (31%), Gaps = 8/238 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +  +            +        +++     +    K++    
Sbjct: 258 SQVRVKDVARVELGGEDYNYLTLYNGKPAAAIGVQLATGANALEVAERVRARVKELAPFA 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +            + I      +I   + + + +++  + +   L     + + + 
Sbjct: 318 PPGVVIEYPQDTTPFVTDAITGVFKTLIEGIVLVFLIMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N  ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAAMVAVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMVEEGLGPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
            + +  ++        +V     +    +      F++ +   +V++  +++ +   +
Sbjct: 436 GQ-ITGALIGVAVVLGAVFVPVAFASGSVGAIYRQFSLTIVVAMVLSVLTAVILTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 78/231 (33%), Gaps = 11/231 (4%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                 G    + + G     +      G S  Q         K              +  
Sbjct: 805  GEWIYGSPQLERYQGVPAVQINGNAADGYSTGQAMDAMEEVLKDLPEGISYAWTGISVQE 864

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIE 717
             + +     +  +   IS + + + +   ++ W   +  I  + L I   L    L G+E
Sbjct: 865  RQSAS----QAPIMYAISIVFVFLCLAALYESWSIPVSVILVVPLGILGALAAALLRGLE 920

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             ++    A+LT +G S  + +++ +  R    L     S  +   ++    L   + TS+
Sbjct: 921  NDVFFQVALLTTVGLSAKNAILIVEFARD---LQAQGRSAVEAAIEAARLRLRPILMTSL 977

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            A  + VLP+      G +   +    +  G++ +   +IF+     + +  
Sbjct: 978  AFILGVLPLVFSSGAGSTSQNAIGTGVIGGMLASTFLAIFMTPLFFVLVSR 1028


>gi|149201122|ref|ZP_01878097.1| Cation/multidrug efflux pump, RND family protein [Roseovarius sp.
           TM1035]
 gi|149145455|gb|EDM33481.1| Cation/multidrug efflux pump, RND family protein [Roseovarius sp.
           TM1035]
          Length = 1035

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 189/689 (27%), Gaps = 49/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L  L        + ++P   P               + +  + 
Sbjct: 8   RPVFAWVISILIMGVGVLAIL-----ILPVAQYPQIAPP-------------SVTVTANY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + L              + ++TL+F      +    +V  
Sbjct: 50  PGASADTVANTVTQVIEQQMTGLDGLRYFSSRSTSAGSAEVTLTFETGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +         +++            ++ S  ++   +D++  +
Sbjct: 110 KLGQATPLLPEIVQRQGITVEKSSAGFLMVVGMISTDGTLDQVDLSDYMVTNLVDELSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DPS+L     T + +       N       FG +   +  
Sbjct: 170 EGVGSVNVFGAQ-YAMRIWLDPSKLAGFGLTPSDVVAAVSAQNAQISAGAFGAQPAVEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +S                     +   E             +       
Sbjct: 229 QLNATITAQSLLS-------------TPEDFRQIVLRAETDGGLVLLDDVARVEIGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +     +   T                     ++          
Sbjct: 276 ATTARFNTDPAAGMAITLAPGANALDTARAIKERMVEFARFFPEGVDYVIPYDTTPFVEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV +V+F+ +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SIKEVVKTLFEAIGLVFLVMFLFLQNLRATLIPTLAVPVVLLGTFGVLAAAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERIMEEEGLGPREATHKSMGQITGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      + FAIT+  ++ +S+  AI++  A+   +++ K        P + F  
Sbjct: 456 MAFFPGSTGVIYQQFAITIVSAMALSVVVAITLTPALCASLLKAKNGHGATRGPFAWFNT 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG--------VLA 585
               +   +  A  W V   +   +  + L     L +     G +           +  
Sbjct: 516 GFGKLTNGYGGAVGWSVRRPVRVFVVYLALALGMALMFLRTPTGFLPEEDQGILFTLIQT 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                       ++ ++   +  +       F V      G+          +K      
Sbjct: 576 PTGSSAERTLEVIKQVEDYYLEQETDVVNSMFGVVGFSFSGNGQNMGLAFVQLKDWEERT 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            P  ++Q           ++    +  V+
Sbjct: 636 EPGQSVQALAGRAFGAFSQIRDAMVFPVV 664



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 81/238 (34%), Gaps = 12/238 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    + +        +        +++   R ++    +     P 
Sbjct: 260 VLLDDVARVEIGAENYATTARFNTDPAAGMAITLAPGANALDTARAIKERMVEFARFFPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I++ +  +  +   + + +++  +     L     + + +  T
Sbjct: 320 GVDYVIPYDTTPFVEISIKEVVKTLFEAIGLVFLVMFLFLQNLRATLIPTLAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKS 764
            G  A  G   N   + A++  IG  V+D +VV    +R+ +        +  R+   KS
Sbjct: 380 FGVLAAAGFSINTLTMLAMVLAIGLLVDDAIVVVENVERIMEE-----EGLGPREATHKS 434

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + +  G  V  +M      +PMA + GS       FAI +   + ++   +I +   +
Sbjct: 435 MGQITGALVGIAMVLSAVFVPMAFFPGSTGVIYQQFAITIVSAMALSVVVAITLTPAL 492



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/417 (11%), Positives = 117/417 (28%), Gaps = 24/417 (5%)

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
              +  +   E     QSV  +L      A+S I D+ +  ++   V+          +  
Sbjct: 624  AFVQLKDWEERTEPGQSV-QALAGRAFGAFSQIRDAMVFPVVPPSVIELGNVSGFDFYLQ 682

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
                     +  A +    ++    +   + S   N L         I  +   A     
Sbjct: 683  ARAGQSHADLMAARN---QLLGMAAQSDLIASARPNGLEDAAQYNLDIDWRKAGAMGLTP 739

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
                     +    + +        K    +   A+     + +         G +   +
Sbjct: 740  TDVGQLLQIAWAGSYVNDFLDQGRIKRVY-VQGEADARAQPTDIDKWRVRNASGGLVPFS 798

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               E  +    Q     +   +  L+                   +       EL   G+
Sbjct: 799  NFAEGRWDYGAQGLYRYNGIPSVQLQGSPAPGVSTGEAMAEMERLVAELGQGYELAWTGL 858

Query: 671  ------------VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIE 717
                        +   +S  A+ + +   ++ W      +  + + I   L    + G E
Sbjct: 859  SLEERESGNQAPLLYALSLAAVFLSLAALYESWSIPFAVMLAMPIGIVGALTGAWIGGFE 918

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
              +     +LT++G +  + +++ +  R+    Y    +  + + ++  +     + TSM
Sbjct: 919  NGVFFQVGLLTVVGLTGKNAILIVEFARE---RYEAGETILEAVIEAARQRFRPIIMTSM 975

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A  + VLP+ +    G     +    +  G +      +       + +     +  
Sbjct: 976  AFSLGVLPLVLSSGAGSGGRNAIGSGVLSGTISGTVLGVVFVPLFFVIVTRLFGRAK 1032


>gi|299147794|ref|ZP_07040857.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 3_1_23]
 gi|298513977|gb|EFI37863.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 3_1_23]
          Length = 1010

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 89/687 (12%), Positives = 193/687 (28%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +       + I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMAGYGITPVDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T     D+   E   R              A +    
Sbjct: 233 L--------------------MHTADEFNDLIVKEENNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K  +   +   G    +  +  + IT +     + F  
Sbjct: 393 LSVGLVVDDAIVMTENIYIRIEKGMAPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ +S        FF   + +
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQSWFYAKTEPFFEGMNRL 512

Query: 539 AIQ----FMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+  R+  +  + +                  ++ +  I +       V    
Sbjct: 513 YSRSLAAFLCKRWIALPFTFITICLIGILWNAVPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISF---------QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S          +   G  N  + L+     +  Q  V E + K + +
Sbjct: 573 IRDYTEDINQLVDSILPDAEAVTARVSSGSGNVRITLKDMNERNYTQMDVAEKISKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +    +         +  + ++
Sbjct: 633 KTMARSFVQQQSSFGGRRGSMPVQYVL 659



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V + +++   ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASINEVKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ A++  +G  V+D +V+ + +          ++ ++   +   E     + 
Sbjct: 380 GFSINVLSMLAIVLSVGLVVDDAIVMTENI---YIRIEKGMAPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G        F+I ++  +++++ +++     +   +   R K +
Sbjct: 437 TTITLVAVFFPIVFMDGMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            VV+   +++I   I  +I   R K 
Sbjct: 983  VVSTLLTMYIVPAIYSYISTNRIKK 1007


>gi|16118478|gb|AAL14440.1|AF370885_2 AdeB RND protein [Acinetobacter baumannii]
 gi|323518085|gb|ADX92466.1| cation/multidrug efflux pump [Acinetobacter baumannii TCDC-AB0715]
          Length = 1035

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 81/685 (11%), Positives = 179/685 (26%), Gaps = 44/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 7   RRPVFAWVIAIFIIIFGLLSI-----PKLPIARFPSVAPP-------------QVNISAT 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +IT +F      E     V 
Sbjct: 49  YPGATAKTINDSVVTLIERELSGVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 109 NKIKAVEARLPQVVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 169 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S +              +        +            N+      
Sbjct: 228 QLITIPLSAQGQLSSLE-------------QFKNISLKSKTNGSVIKLSDVANVEIGSQA 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 275 YNFAILENGKPATAAAIQLSPGANAVKTAEVVRAKIEELKLNLPEGMEFSIPYDTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 335 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +         S I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERIMATEGLSPKDATSKAMKEITSPIIGITLVLAAVFL 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      + F +TM +SIL S   A+ +  A+   I++            + F 
Sbjct: 455 PMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL---ANRPV 589
              D +  ++       +  ++   +  + +               +             
Sbjct: 515 RSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFTGMKYWPTAFMPEEDQGWFMTSFQ 574

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S   +      +        D             G S A   V              S
Sbjct: 575 LPSDATAERTRNVVNQFENNLKDNPDVKSNTTILGWGFSGAGQNVAVAFTTLKDFKERTS 634

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
           +                    + V+
Sbjct: 635 SASKMTSDVNSSMANSTEGETMAVL 659



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V    V+    +++   +P 
Sbjct: 260 IKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEVVRAKIEELKLNLPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 320 GMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  +S +D   K
Sbjct: 377 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLSPKDATSK 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPMA   GSV      F + M+  I+ +A  ++ +   +
Sbjct: 434 AMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPAL 492



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 785  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 844

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 845  GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 896

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 897  PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 953

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 954  TVAAAKLRLRPILMTSLAFTCGVIPLVIASGAS-SETQHALGTGVFGGMISATILA 1008


>gi|254423090|ref|ZP_05036808.1| RND transporter, HAE1 family [Synechococcus sp. PCC 7335]
 gi|196190579|gb|EDX85543.1| RND transporter, HAE1 family [Synechococcus sp. PCC 7335]
          Length = 1070

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 66/553 (11%), Positives = 154/553 (27%), Gaps = 40/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   ++   G +       P   + ++P   P             + + +  +
Sbjct: 8   KRPVFATVCALILLLAGAVSI-----PTLPIAQYPDISP-------------TQVNVTAN 49

Query: 62  EDDFVNGFLQM-YSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++   +  +   +   EG+   +     +    I ++F  +R K+  A  V 
Sbjct: 50  YIGADAETVERGVTSIIERQINGVEGMRYMTSNSSNDGISNIVVTFDSTRDKDIAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L     +  +  + E    ++      +         S        D +  
Sbjct: 110 NRVSLAEPQLPETVNQTGVTVSKETSNILLAMSLYTEDDQYDDTFLSNYADLYVADALQR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                  +        +    DP  L     T   +       N        G   +   
Sbjct: 170 VPGVGNVVIFGERTYAMRIWLDPQELAGRGLTADDVVLALQEQNIQVGAGQIGQPPVASD 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +  +  +                 +    +       +                
Sbjct: 230 QDFQIDLRAESRL-------------RTPEEFEDLVLQTGEAGQLIRLRDVGRAELGAER 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +     +      A L +   P     +         
Sbjct: 277 YSSFLRFRGQEAIGLGIFQLPGSNALAVAQGVKARMAELASDFPPGMEYGIGFDTTEFVE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T     GLV++V+++ +   +  +V   +I ++++ T A++ L G ++   +
Sbjct: 337 QSLLSVLWTLIQAVGLVVLVIYIFLQDWRTTVVPAITIPVSLVATFAIVKLFGFSINSLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G+ L  G+ VD  I+V E I  +  +     V  +++       + I  S +   +  
Sbjct: 397 LFGLTLATGMVVDDAIVVVEDISAKINQRGLNPVEAAIEAMRELTGAVIATSLVLMAVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V FF G      R FA+T+  +I IS F A+++   +   + R +   +     L   F
Sbjct: 457 PVAFFPGTTGALYRQFALTIAFAIAISTFNALTLTPTLSGLLFRTRSEPTGWRAKLFNPF 516

Query: 533 LIPDCIAIQFMRA 545
                        
Sbjct: 517 NDALDWLRDRYGN 529



 Score = 89.4 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 96/251 (38%), Gaps = 6/251 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A + + L  V       +      +    E   L   Q    +++A  + ++    ++ 
Sbjct: 257 EAGQLIRLRDVGRAELGAERYSSFLRFRGQEAIGLGIFQLPGSNALAVAQGVKARMAELA 316

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P            +   + +   +  +I +   +++ I+I    W   +    T+ +
Sbjct: 317 SDFPPGMEYGIGFDTTEFVEQSLLSVLWTLIQAVGLVVLVIYIFLQDWRTTVVPAITIPV 376

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     LFG   N   +  +    G  V+D +VV + +  + K+    ++  +   
Sbjct: 377 SLVATFAIVKLFGFSINSLTLFGLTLATGMVVDDAIVVVEDI--SAKINQRGLNPVEAAI 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++ E  G  + TS+      +P+A + G+       FA+ +AF I ++  +++ +   +
Sbjct: 435 EAMRELTGAVIATSLVLMAVFVPVAFFPGTTGALYRQFALTIAFAIAISTFNALTLTPTL 494

Query: 820 LLFIYDWRAKN 830
              ++  R++ 
Sbjct: 495 SGLLFRTRSEP 505



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/169 (12%), Positives = 66/169 (39%), Gaps = 7/169 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             +  +   +    + + +  +++ Y   +  +  + L +   L    + G+  ++     
Sbjct: 867  NQAPIIFGLGIALVFLVLAAQYESYVDPVIILFAVPLAVFGALIAQTIRGLPNDVYCQIG 926

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG +  + +++ +      +L     S  +   ++  + +   + T+++   S+ P
Sbjct: 927  LVMLIGLASKNSILIVEFAN---QLRCQGRSITEAALEAAQQRMRPILMTAISTLSSIFP 983

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +    G     S    +  G++VA   S+FI   + + I  +     
Sbjct: 984  LVIATGAGAGSRQSLGTAVFGGMLVATFLSLFIVPVLYIVIKGFTVDKK 1032


>gi|324115324|gb|EGC09288.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia fergusonii B253]
          Length = 1037

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 67/566 (11%), Positives = 157/566 (27%), Gaps = 34/566 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +  +        + ++P   P                     +
Sbjct: 8   RPVFAWVLAIILMLAGGIAIM-----NLPVAQYPQIAPPTIT---------VSATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AQTVEDSVTQVIEQNMTGLDGLMYMSSTSDAAGNAQITLTFETGTSADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D    +  + +  +     D +  +    
Sbjct: 114 AMPSLPQEVQQQGISVDKSSSNILMVAAFISDDGSLNQYDIADYVASNIKDPLSRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +       +     + NN   G   G            
Sbjct: 174 SVQLFGSQ-YAMRIWLDPQKLNKYNLEPQDVISQIKIQNNQISGGQLGGMPQAADQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +   +    +        +           
Sbjct: 233 SIIVQTRL-------------QSPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYSTVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +        L A        +           S   
Sbjct: 280 RYNGKPAAGIAIKLATGANALDTSKAVKSELDRLSAWFPASLKTVYPYDTTPFIQISIQE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS +G T+   ++ G+V
Sbjct: 340 VFKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVILGTFAILSAVGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDM---GFSRAYSTIFDSNITALIATVVL 477
           L IGL VD  I+V E +    + +  +   +         RA   I        +    +
Sbjct: 400 LAIGLLVDDAIVVVENVERVISEEGLAPKEAAHKSMGQIQRALVGIAVVLSAVFMPMAFM 459

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
               G   R F+IT+  S+L+S+F A+S+  A+    +   K++ + +        L   
Sbjct: 460 SGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATLLKPTKEVTTGNSLFARFNRLFEA 519

Query: 537 CIAIQFMRARFWGVGISILFSICSIC 562
                    R           +  + 
Sbjct: 520 STNHYTDSTRRLLGTTGRYMVVYLLI 545



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 87/250 (34%), Gaps = 10/250 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  ++ ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSKAVKSELDRLSAWF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    +I + I + + +++  + +   L     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIQISIQEVFKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    ++ ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVISEEGLAPKEAAHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +   
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSLTPA 491

Query: 823 IYDWRAKNAR 832
           +     K  +
Sbjct: 492 LCATLLKPTK 501



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 90/248 (36%), Gaps = 7/248 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     E +    + +  L 
Sbjct: 790  NASGAMAPLSAYSSTEWTYGSPRLERYNGLPSMEILGEAAAGKSTGEAMDFMASLVAKLP 849

Query: 650  TIQNTEIVGPKISREL-IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G     +L   +  +   IS I + + +   ++ W      +  + L +   
Sbjct: 850  AGVGYSWTGLSYQEKLSTNQAPMLYAISLIVVFLALAALYESWSIPFSVMLVVPLGVIGA 909

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG +  + +++ +   + M+      S  + I ++   
Sbjct: 910  LLATDLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAVEMMQKE--GKSPVEAIIEAARM 967

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + TS+A  + VLP+ V    G     +    +  G+  A   +I+      + + 
Sbjct: 968  RLRPILMTSLAFILGVLPLVVSHGAGSGAQNAVGTGVMGGMFAATVLAIYFVPVFFIVVE 1027

Query: 825  DWRAKNAR 832
               ++  +
Sbjct: 1028 HLFSRFKK 1035


>gi|171912821|ref|ZP_02928291.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 1059

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 81/691 (11%), Positives = 180/691 (26%), Gaps = 41/691 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +  +        + ++P+  P                      
Sbjct: 8   RPVFAWVVALVIMVAGGISMM-----TLPISQYPNIAPPAV---------AISASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        +T++F           +V   LQ 
Sbjct: 54  AKTVEDTVTQVIEQKMNGIDNLRYIESASDSNGGATVTITFEGGTDPNIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + +   +        ++++     +       + S  +     D I       
Sbjct: 114 ALPLLPQEVQAQGVRVAKATNNNLLVLGLVSEDGSMDNTDLSDYLFGSMQDPISRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L Q   T A +S      N        G            
Sbjct: 174 DIQTFGSQ-YAMRIWLDPDKLVQYQLTAADVSTAIRSQNAQVSSGSLGGLPAVPGQMLTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +        R        +        +  
Sbjct: 233 TIVTRGRL-------------QTAEQFESILLRVNTDGSRVLLKDVARVELGSENYNNLA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +   T+         L     P    +           S + 
Sbjct: 280 RYNRRPAAGMAIRAAAGANALETVVAVKAKVDELSRFFPPGLKVVYPYDTSPFVRHSITE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G TL   ++ G+V
Sbjct: 340 VVKTLVEAIILVFLVIYLFLQNWRATLIPTIAVPVVLLGTFGVLAAAGFTLNTLTLFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  +   +      +    +    +    A V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEGLAPREATQKSMDQISGALVGIGLVLCAAFVPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530
           G   G   R FAIT+  ++++S+  A+ +  A+   +         +K+           
Sbjct: 460 GNSTGVIYRQFAITIVSAVVLSVVVALILTPALCATMLKPVTKGAHHKQRGFFGWFNRVF 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                          R     + +   I +        L  G        +   A +   
Sbjct: 520 DRTADAYAWTVGHLLRRSAYLLIVYGFIAAGVFYLFKHLQTGFLPDEDKGVIFTAAQLPP 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S    +L  +Q  +    +  G+    V          A    +               
Sbjct: 580 GSTREQSLAVVQRMEDYLLDKQGDSVAGVFGVAGFSFFGAGQNQVITFSHLKDWKERQGP 639

Query: 651 IQNTEI-VGPKISRELIRKGIVGVIISAIAM 680
            Q  +   G  +   +  K  + V  +  A+
Sbjct: 640 NQGVKAIQGQTMGVFMQIKEAMAVAFAPPAV 670



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 77/213 (36%), Gaps = 7/213 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L S    +++  N        +R             V   V +      P   +
Sbjct: 264 DVARVELGSENYNNLARYNRRPAAGMAIRAAAGANALETVVAVKAKVDELSRFFPPGLKV 323

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
                  P +   +    +  ++ + I + + I++  + W   L     + + +  T G 
Sbjct: 324 VYPYDTSPFVRHSITE-VVKTLVEAIILVFLVIYLFLQNWRATLIPTIAVPVVLLGTFGV 382

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            A  G   N   +  ++  IG  V+D +VV + +     +    ++ R+   KS+++  G
Sbjct: 383 LAAAGFTLNTLTLFGLVLAIGLLVDDAIVVVENV--ERVMEEEGLAPREATQKSMDQISG 440

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIP 800
             V   +    + +PMA +G   G +   FAI 
Sbjct: 441 ALVGIGLVLCAAFVPMAFFGNSTGVIYRQFAIT 473



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 49/444 (11%), Positives = 129/444 (29%), Gaps = 27/444 (6%)

Query: 409  GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
                ++  + G+          N ++     ++ ++ Q     +     +          
Sbjct: 600  KQGDSVAGVFGVAGFSFFGAGQNQVITFSHLKDWKERQGPNQGVKAIQGQTMGVFMQIKE 659

Query: 469  TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
               +A         G V GF + +     +    A+   R  ++ +              
Sbjct: 660  AMAVAFAPPAVQELGNVSGFDLRLLDQAGL-GHDALMNARMQLVGMASQNPAL---FGVR 715

Query: 529  SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ---LGVLA 585
                       +     +   +G+SI      +  ++  G       KG ++   +   A
Sbjct: 716  PNGLSDTPQFQLDIDEEKASALGLSIASINSELANIWGSGYVNDFLDKGRVKKVFIQGDA 775

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
               +    +         GD+   +      +++        + A +  +     K    
Sbjct: 776  PFRMTPEDIGRWFIRNNRGDMVPYSAFASARWIMGSPKLERFNGAPSVAISGEAAKGHSS 835

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIV----------GVIISAIAMLIYI---WIRFKWYF 692
                 I                 GI             +     +++++    +   W  
Sbjct: 836  GEAMKIMEDLAKQLPAGIGYTWAGISYEERLSGSNSAALYGLALLMVFLCLAALYESWAI 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  + L     L   ++ G+  ++     ++T+IG S  + ++V +  ++    + 
Sbjct: 896  PISVMMDMPLGALGVLAAVSIRGLPNDVYFQIGLITIIGLSAKNAILVVEFAKE---RFD 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
               S  D    ++ + L   + TS+A  + VLP+A     G     +    +  G V   
Sbjct: 953  AGESLIDSAVFAVRQRLRPILMTSIAFGLGVLPLAFSTGPGAGSQNAIGTGVVGGAVTTT 1012

Query: 810  SSSIFIAA-PILLFIYDWRAKNAR 832
               +F      ++ +  +R K  +
Sbjct: 1013 LLGLFFVPLYYVVVLKMFRVKPVK 1036


>gi|134095559|ref|YP_001100634.1| aminoglycoside/multidrug efflux pump [Herminiimonas arsenicoxydans]
 gi|133739462|emb|CAL62513.1| Acriflavine resistance protein B [Herminiimonas arsenicoxydans]
          Length = 1053

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 62/547 (11%), Positives = 146/547 (26%), Gaps = 38/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L           + ++P+  P                      
Sbjct: 8   RPIFAWVLSIIIMLAGGLAIF-----TLPISQYPTIAPPTV---------SIQATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L        +     + ++TL+F +    +    +V   LQ 
Sbjct: 54  AKVVENSVTQIIEQNMKGLDGLIYMSATSSATGSAQLTLTFDNKTDPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  L  + ++  +V +      + +     +       + S  +    +D +       
Sbjct: 114 ASPLLPQEVQRQGVVVSKAASGFLQVVGFVSEDGSMDKDDISDYVAANLVDPLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L      T  +       N        G            
Sbjct: 174 NIQVFGS-KYSMRIWLDPNKLDTYKLATTDIIATIRAQNAQVAVGQLGGAPSAPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 +           
Sbjct: 233 TISAQDRL-------------QTPEQFRAIVIRSNPDGSTLKLGDIARVELGAENYETIS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + S     +   T          L+         +V          S   
Sbjct: 280 RYNGKPATGVLISLSTGANALDTAVGIKNKLEELKPYFPAGLTAVVPFDTTPFISVSIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+ LG ++ + ++  +V
Sbjct: 340 VVVTLLEAIALVFLVMYLFMQNIRATLIPTIAVPVVLLGTFGILAALGFSINMLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERIMTEEGLSPLEATRKSMDQITGALVGIALVLSAVFVPMAFL 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F  T+  ++ +S+  A+ +  A+         +K +      +       
Sbjct: 460 GGSTGIIYRQFTATIVSAMALSVLVAVVLTPALCAT-----MLKPVKKGEHGKTTGFFAW 514

Query: 538 IAIQFMR 544
               F R
Sbjct: 515 FNRNFDR 521



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 83/241 (34%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +       +  +   +        ++       +++     ++   +++    P     
Sbjct: 264 DIARVELGAENYETISRYNGKPATGVLISLSTGANALDTAVGIKNKLEELKPYFPAGLTA 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                        I+  +V ++ +   + + +++  +     L     + + +  T G  
Sbjct: 324 VVPFDTTPFISVSIKGVVVTLLEAIALVFLVMYLFMQNIRATLIPTIAVPVVLLGTFGIL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A  G   N+  + A++  IG  V+D +VV + +     +    +S  +   KS+++  G 
Sbjct: 384 AALGFSINMLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPLEATRKSMDQITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V  ++      +PMA  GGS       F   +   + ++   ++ +   +   +     
Sbjct: 442 LVGIALVLSAVFVPMAFLGGSTGIIYRQFTATIVSAMALSVLVAVVLTPALCATMLKPVK 501

Query: 829 K 829
           K
Sbjct: 502 K 502



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 86/271 (31%), Gaps = 9/271 (3%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                   + +  +      V  N+   +          + G    + ++G     ++ + 
Sbjct: 770  YMQADAPFRMVPEDFKLWSVRNNQGQMVPFSAFASARWEYGSPRLERYNGVSAMEIQGEA 829

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
             PG S   +                           +   +      + ++I  + +   
Sbjct: 830  APGISSGASMDEIERLAGQLPAGFGIEWTALSYQERQAGSQTTLLYTLSLLIVFLCLA-- 887

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +   W      +    L I   +    L G+E ++    A+LT +G +  + +++ + 
Sbjct: 888  -ALYESWTIPTAVLLVAPLGILGAVLANTLAGMERDVYFQVAMLTTVGLTSKNAILIVEF 946

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
             + N+    + +   D   +++   L   + TS+A  + VLP+A+    G     +    
Sbjct: 947  AKANL---ESGMELIDATLQAVRVRLRPIIMTSLAFGLGVLPLALASGAGSGAQRAIGTG 1003

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  G++V     IF      + +     +  
Sbjct: 1004 VVGGMIVGTLLGIFFIPLFFVLVERLFMRPK 1034


>gi|254282420|ref|ZP_04957388.1| protein-export membrane protein SecD [gamma proteobacterium
           NOR51-B]
 gi|219678623|gb|EED34972.1| protein-export membrane protein SecD [gamma proteobacterium
           NOR51-B]
          Length = 638

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 165/526 (31%), Positives = 267/526 (50%), Gaps = 38/526 (7%)

Query: 30  SMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDL GG H  LEVD D      L MY   ++  L++E I
Sbjct: 107 NLAPTTPEWLMSGGAEPMKLGLDLSGGVHFQLEVDVDAATERRLAMYESGVKRQLREERI 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
               +      + + F     +           +   + L  +   +         ++  
Sbjct: 167 RGL-VTLDGTDLEMKFRSEADR--------EAARAATADLYPELFLDRTEEGDSWNLTAS 217

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +++  + +V+ +A+ Q++  +R R++++G+SE  +QR G++RI+++LPG QD +  +++L
Sbjct: 218 VTEQTLSEVVDYAVSQNLTTLRNRVNELGVSEPLVQRRGANRIVVELPGIQDTAEAKRIL 277

Query: 207 GTTAKMSFHKVLPNN-SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           G  A + F  V   N              D  G    +E  + ISG  ++GA A FD   
Sbjct: 278 GKVANLEFRLVAETNAPITERQRFEYRSADRAGIYEWLERDLIISGERVSGANAGFDQNN 337

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPL------------------------AVVLDGR 301
            +P V IS D  G       TRDNI + +                         +  D +
Sbjct: 338 -QPNVSISLDGEGGMLMSRATRDNIKRRMGVLFIERKYRTRYEMDENGDEKIVKIPYDEK 396

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    + Q+    + QI+G  +   A  LA MLRAG+L   +  VEER VG  LG+++I
Sbjct: 397 KLLTAPVIQSALGAQFQITGLDSTAEASELALMLRAGALAAPITFVEERTVGPSLGAENI 456

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G  ++  GL L+V+FM++ Y  +G+ A   + +N++L +A++SL+GATLTLP IAGIV
Sbjct: 457 RLGVKSVQMGLTLVVIFMLLYYRVFGIAAVIGLSVNLVLLVAVMSLMGATLTLPGIAGIV 516

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+  RIREE     S   ++  GF RA +TI D+NIT LI  V+L+  G
Sbjct: 517 LTVGMAVDANVLIFARIREELANRASPQMAIHAGFERAVATILDANITTLIVAVILYAVG 576

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            G ++GFA+T+ + IL SMFTAI   RA++  I   +++  + I P
Sbjct: 577 TGPIKGFAVTLSVGILTSMFTAILGTRAIINLIYGGRRVDKLSIGP 622



 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 100/277 (36%), Gaps = 5/277 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI        L+     +      G + +        ++             D       
Sbjct: 342 SISLDGEGGMLMSRATRDNIKRRMGVLFIERKYRTRYEMDENGDEKIVKIPYDEKKLLTA 401

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLE-MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +  Q+Q     +     E  +  +   +    T      VGP +  E IR G+ 
Sbjct: 402 PVIQSALGAQFQITGLDSTAEASELALMLRAGALAAPITFVEERTVGPSLGAENIRLGVK 461

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V +    ++I++ + ++  F + A+  L +++   +   +L G    L  +A ++  +G
Sbjct: 462 SVQMGLTLVVIFMLLYYRV-FGIAAVIGLSVNLVLLVAVMSLMGATLTLPGIAGIVLTVG 520

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +V+  V+++ R+R+ +       S +  I       +   +  ++   I  + +   G 
Sbjct: 521 MAVDANVLIFARIREELA---NRASPQMAIHAGFERAVATILDANITTLIVAVILYAVGT 577

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             I  FA+ ++ GI+ +  ++I     I+  IY  R 
Sbjct: 578 GPIKGFAVTLSVGILTSMFTAILGTRAIINLIYGGRR 614



 Score = 39.7 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/122 (10%), Positives = 28/122 (22%), Gaps = 23/122 (18%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + + W  +L   +   G   A PN        +     P +                 V 
Sbjct: 4   KYSLWKYLLILTVVVTGFYYAAPNLYTPDPALQ---IAPSSS---------------SVQ 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D  +    +   DE              ++       +  A +  +      ++  L  
Sbjct: 46  LDAALLSKAENALDEA-----GINYFGEELQNSGKSALIRLASAEQQLRAQAILSRALGD 100

Query: 122 VN 123
             
Sbjct: 101 FF 102


>gi|148973881|ref|ZP_01811414.1| putative acriflavin resistence protein [Vibrionales bacterium
           SWAT-3]
 gi|145965578|gb|EDK30826.1| putative acriflavin resistence protein [Vibrionales bacterium
           SWAT-3]
          Length = 1050

 Score =  191 bits (485), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 74/692 (10%), Positives = 191/692 (27%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPKISPP-------------SVSVSAF 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSANDGSYNLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  +     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPNGEYDDQFLINYVNLNIKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ ++      N        G     ++
Sbjct: 170 VKGISEVNVLGGGEYAMRVWLDPEKMANLNITTSDVNRALAEQNVQVAAGRIGAAPYNNA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ETADEFENVVLRATQDGSTVYLKDIARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    +   L                     
Sbjct: 277 YDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSKNFPEGVAYEASYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++ + G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQMTGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATLIAMKEVTGPIITSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           I   +L    G   R FA+T+ ++++IS   A+++  A+   +         +  ++ + 
Sbjct: 457 IPVAMLPGITGIMYRQFALTICIAVVISSINALTLSPALCSLVLKQGGGNTARWYQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
              S              +         +  +  +     T       + KG + + V  
Sbjct: 517 GLESVTNKYGQVAGFLVKKGVLLFTFFVVALAAVTYFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS      E L          DG              +     +   +    T  
Sbjct: 577 PDAASLSRTEDVTEQLLQMVEQEPGVDGVTLVNGYAFMTGASASNGASMFIKLHDWDTRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  + + +  +I+     +    ++ + 
Sbjct: 637 ALD-GQHSAQAISQRINGRAATELPQAIVFAM 667



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 85/235 (36%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +       +  D + +    + + +        +++   + +  +   +++  P 
Sbjct: 262 VYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSKNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                          E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N   +  ++  IG  V+D ++V + +         +IS R     ++ E
Sbjct: 382 FAIMQMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLIAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      +P+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAVVISSINALTLSPAL 495



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 60/447 (13%), Positives = 121/447 (27%), Gaps = 26/447 (5%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDS-NILVNERIREENRKNQSVFCSLDMGFS-RAYSTIF 464
            LL      P + G+ L  G A  +     N         +     +LD   S +A S   
Sbjct: 592  LLQMVEQEPGVDGVTLVNGYAFMTGASASNGASMFIKLHDWDTRNALDGQHSAQAISQRI 651

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
            +      +   ++F  G  AV G     G   ++      S   +   M   I    K  
Sbjct: 652  NGRAATELPQAIVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMNDVITEATKQP 711

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             I     +    +P                            L +  +N    F    ++
Sbjct: 712  EISHTFSTFRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFTMFGKNFRV 771

Query: 582  GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + A+              V  S       S  +        D    + +          
Sbjct: 772  TMQADSDHRSSMDDLQRFHVRSSAGEMIPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQP 831

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
            A           +  +      Q  +     ++ + +  G   +   +   + IY   + 
Sbjct: 832  APGYSSGDAIAAMERVAAEVLPQGYQYEWTGMAYQEVLAGNQAIFAFALALIFIYLFMVA 891

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   +  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892  QYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
              ++         D   K           TS +  + + P+    G+      S  I + 
Sbjct: 952  --VEREEKDAPIDDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLI 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++    +  F+      F+   R K
Sbjct: 1010 GGLLCVLLAGTFLIPGFYAFVQRKREK 1036


>gi|260773890|ref|ZP_05882805.1| protein-export membrane protein SecD [Vibrio metschnikovii CIP
           69.14]
 gi|260610851|gb|EEX36055.1| protein-export membrane protein SecD [Vibrio metschnikovii CIP
           69.14]
          Length = 610

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 154/515 (29%), Positives = 262/515 (50%), Gaps = 31/515 (6%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           L  S +   P    +     I  GLDLRGG   +L VD D          +DE++  L  
Sbjct: 111 LTFSYVSVAPPWFTQMGFTPIKFGLDLRGGVQFLLNVDVDKAFQEQRDGITDEIKEMLVN 170

Query: 84  EGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           + I    +  +  +   +S         I+  V    QG              V ++  +
Sbjct: 171 QHIRGVRIEHEGNDGFLVSVNSRASLNKISQFVKENYQGWE------------VKSSSDQ 218

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           +++  S+ N     S  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDP++ 
Sbjct: 219 LTVQPSKQNKLDFQSATIQQNLKIMRDRIEELGITEALVQRQGEHSIRIELPGVQDPAQA 278

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           + ++G TA ++F++V   N+          L+D++G   ++  +  ++G H+  A A  D
Sbjct: 279 KNVIGATASLAFYEV---NTSGIAGRDDLQLKDNNGQLVILHKRPVLTGDHIVNARAGMD 335

Query: 263 PKTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
                 V        G            +    V R+              + +    Q+
Sbjct: 336 KMGLSEVNISLDHAGGKVMSDFSAKHIGKPMATVYREYKTNANGETERSERVISVATIQS 395

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
               + +I+G  + + A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  G
Sbjct: 396 QLGSQFRITGAGSNQDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALG 455

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDS 430
           + L + FM + Y + G VA+ ++ +N++    L++LL  A LTLP IAG+VL +G+AVD+
Sbjct: 456 MALTLTFMALWYRRLGWVANAALLINMVCLFGLIALLPGAVLTLPGIAGLVLTVGMAVDT 515

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
           N+L+ ERIR++  + +S   ++D GFS A+STI D+N+T +I  +VL+  G G ++GFA+
Sbjct: 516 NVLIFERIRDKLNEGRSFAQAIDKGFSSAFSTILDANVTTMITAIVLYSIGNGPIQGFAL 575

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T+GL ++ SMFT +   RA++  I      + + I
Sbjct: 576 TLGLGLITSMFTGVFASRALINLIWGRDSRRDVRI 610



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 82/203 (40%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             Q      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 408 SNQDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMALTLTFMALWY 467

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++    G  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 468 R-RLGWVANAALLINMVCLFGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 526

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       SF   IDK  +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 527 LNE---GRSFAQAIDKGFSSAFSTILDANVTTMITAIVLYSIGNGPIQGFALTLGLGLIT 583

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+   ++ 
Sbjct: 584 SMFTGVFASRALINLIWGRDSRR 606


>gi|325498651|gb|EGC96510.1| multidrug transporter, RpoS-dependent [Escherichia fergusonii
           ECD227]
          Length = 1037

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/566 (11%), Positives = 157/566 (27%), Gaps = 34/566 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +  +        + ++P   P                     +
Sbjct: 8   RPVFAWVLAIILMLAGGIAIM-----NLPVAQYPQIAPPTIT---------VSATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AQTVEDSVTQVIEQNMTGLDGLMYMSSTSDAAGNAQITLTFETGTSADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D    +  + +  +     D +  +    
Sbjct: 114 AMPSLPQEVQQQGISVDKSSSNILMVAAFISDDGSLNQYDIADYVASNIKDPLSRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +       +     + NN   G   G            
Sbjct: 174 SVQLFGSQ-YAMRIWLDPQKLNKYNLEPQDVISQIKIQNNQISGGQLGGMPQAADQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +   +    +        +           
Sbjct: 233 SIIVQTRL-------------QSPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYSTVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +        L A        +           S   
Sbjct: 280 RYNGKPAAGIAIKLATGANALDTSKAVKSELDRLSAWFPASLKTVYPYDTTPFIQISIQE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS +G T+   ++ G+V
Sbjct: 340 VFKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVILGTFAILSAVGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDM---GFSRAYSTIFDSNITALIATVVL 477
           L IGL VD  I+V E +    + +  +   +         RA   I        +    +
Sbjct: 400 LAIGLLVDDAIVVVENVERVISEEGLAPKEAAHKSMGQIQRALVGIAVVLSAVFMPMAFM 459

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
               G   R F+IT+  S+L+S+F A+S+  A+    +   K++ + +        L   
Sbjct: 460 SGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATLLKPTKEVTTGNSLFARFNRLFEA 519

Query: 537 CIAIQFMRARFWGVGISILFSICSIC 562
                    R           +  + 
Sbjct: 520 STNHYTDSTRRLLGTTGRYMVVYLLI 545



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 87/250 (34%), Gaps = 10/250 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  ++ ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSKAVKSELDRLSAWF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    +I + I + + +++  + +   L     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIQISIQEVFKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    ++ ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVISEEGLAPKEAAHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +   
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSLTPA 491

Query: 823 IYDWRAKNAR 832
           +     K  +
Sbjct: 492 LCATLLKPTK 501



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 90/248 (36%), Gaps = 7/248 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     E +    + +  L 
Sbjct: 790  NASGTMAPLSAYSSTEWTYGSPRLERYNGLPSMEILGEAAAGKSTGEAMDFMASLVAKLP 849

Query: 650  TIQNTEIVGPKISREL-IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G     +L   +  +   IS I + + +   ++ W      +  + L +   
Sbjct: 850  AGVGYSWTGLSYQEKLSTNQAPMLYAISLIVVFLALAALYESWSIPFSVMLVVPLGVIGA 909

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG +  + +++ +   + M+      S  + I ++   
Sbjct: 910  LLATDLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAVEMMQKE--GKSPVEAIIEAARM 967

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+      + + 
Sbjct: 968  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFVPVFFIVVE 1027

Query: 825  DWRAKNAR 832
               ++  +
Sbjct: 1028 HLFSRFKK 1035


>gi|218550347|ref|YP_002384138.1| multidrug transporter, RpoS-dependent [Escherichia fergusonii ATCC
           35469]
 gi|218357888|emb|CAQ90532.1| multidrug transporter, RpoS-dependent [Escherichia fergusonii ATCC
           35469]
          Length = 1037

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/566 (11%), Positives = 157/566 (27%), Gaps = 34/566 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +  +        + ++P   P                     +
Sbjct: 8   RPVFAWVLAIILMLAGGIAIM-----NLPVAQYPQIAPPTIT---------VSATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AQTVEDSVTQVIEQNMTGLDGLMYMSSTSDAAGNAQITLTFETGTSADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         ++++    D    +  + +  +     D +  +    
Sbjct: 114 AMPSLPQEVQQQGISVDKSSSNILMVAAFISDDGSLNQYDIADYVASNIKDPLSRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +       +     + NN   G   G            
Sbjct: 174 SVQLFGSQ-YAMRIWLDPQKLNKYNLEPQDVISQIKIQNNQISGGQLGGMPQAADQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +   +    +        +           
Sbjct: 233 SIIVQTRL-------------QSPEEFGKILLKVQQDGSQVLLRDVARVELGAEDYSTVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +        L A        +           S   
Sbjct: 280 RYNGKPAAGIAIKLATGANALDTSKAVKSELDRLSAWFPASLKTVYPYDTTPFIQISIQE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS +G T+   ++ G+V
Sbjct: 340 VFKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVILGTFAILSAVGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDM---GFSRAYSTIFDSNITALIATVVL 477
           L IGL VD  I+V E +    + +  +   +         RA   I        +    +
Sbjct: 400 LAIGLLVDDAIVVVENVERVISEEGLAPKEAAHKSMGQIQRALVGIAVVLSAVFMPMAFM 459

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
               G   R F+IT+  S+L+S+F A+S+  A+    +   K++ + +        L   
Sbjct: 460 SGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATLLKPTKEVTTGNSLFARFNRLFEA 519

Query: 537 CIAIQFMRARFWGVGISILFSICSIC 562
                    R           +  + 
Sbjct: 520 STNHYTDSTRRLLGTTGRYMVVYLLI 545



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 87/250 (34%), Gaps = 10/250 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  ++ ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSKAVKSELDRLSAWF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    +I + I + + +++  + +   L     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIQISIQEVFKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    ++ ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVISEEGLAPKEAAHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +   
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSLTPA 491

Query: 823 IYDWRAKNAR 832
           +     K  +
Sbjct: 492 LCATLLKPTK 501



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 90/248 (36%), Gaps = 7/248 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     E +    + +  L 
Sbjct: 790  NASGAMAPLSAYSSTEWTYGSPRLERYNGLPSMEILGEAAAGKSTGEAMDFMASLVAKLP 849

Query: 650  TIQNTEIVGPKISREL-IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G     +L   +  +   IS I + + +   ++ W      +  + L +   
Sbjct: 850  AGVGYSWTGLSYQEKLSTNQAPMLYAISLIVVFLALAALYESWSIPFSVMLVVPLGVIGA 909

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG +  + +++ +   + M+      S  + I ++   
Sbjct: 910  LLATDLRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAVEMMQKE--GKSPVEAIIEAARM 967

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+      + + 
Sbjct: 968  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIYFVPVFFIVVE 1027

Query: 825  DWRAKNAR 832
               ++  +
Sbjct: 1028 HLFSRFKK 1035


>gi|67924386|ref|ZP_00517816.1| Hydrophobe/amphiphile efflux-1 HAE1 [Crocosphaera watsonii WH 8501]
 gi|67853779|gb|EAM49108.1| Hydrophobe/amphiphile efflux-1 HAE1 [Crocosphaera watsonii WH 8501]
          Length = 1041

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 76/524 (14%), Positives = 159/524 (30%), Gaps = 32/524 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +GL+           LDRFP   P                  +  
Sbjct: 9   KRPVFSSVCSFLILLVGLVSLF-----NLPLDRFPEISPTRVQ---------VQSTYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++    I   S     + IT++F  SR  +  A  V   + 
Sbjct: 55  SAEVVENAVTNVLERQINGIEGLRYISSSSSNSGTSSITVTFDSSRNPDLAAVDVQNQVS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L    ++  +    + +  ++      D      +  S    +  +D I   +  
Sbjct: 115 VVQSQLPDVVQRTGVQVRRQGDNLLLGIGLFSDDDRYDPVFLSNYTDQYLLDAIKRLDGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L     TT  +       N        G     +    Q
Sbjct: 175 GNVRIFGERRYAMRLWLDPNKLASRGLTTQDVVNALSEQNLQVGAGKIGAEPAPEGQQFQ 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           + +    ++                      +   +      +                 
Sbjct: 235 FDLRAISQL-------------KDPKDFENLLLKTDENGGLVYFKDVGRAELGAQDYNTF 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +     +        L     P    IV          S S
Sbjct: 282 LRFRGQEAVGMGIYQRTGSNALEVAQKVKAEMERLSVFFPPGLKYIVAFDTTEFVEESLS 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +  GLV++V+ + +   +  L+   +I L +I T A + +   ++   ++ G+
Sbjct: 342 EVVKTLLVAVGLVIVVILIFLQNWRTTLIPALTIPLALIGTFAFIKVFDFSINSLTLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSL--DMGFSRAYSTIFDSNITALIATVVLF 478
            L  G+ VD  I+V E+I      N     +         + + +  S +   +   V F
Sbjct: 402 TLATGMVVDDAIIVVEQINRYIEDNDMSPQAAASKAMGELSSAVVATSLVLMAVFVPVAF 461

Query: 479 FFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           F G      R FA+T+  SI+IS F A+++  ++   +++  + 
Sbjct: 462 FPGTTGALYRQFALTIAFSIVISTFLALTLTPSLCALLLKKGQK 505



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 92/241 (38%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  +   +    E   +   Q    +++   + ++   ++++   P     
Sbjct: 267 DVGRAELGAQDYNTFLRFRGQEAVGMGIYQRTGSNALEVAQKVKAEMERLSVFFPPGLKY 326

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  +   E + + +  ++++   +++ I I  + W   L    T+ L +  T  F 
Sbjct: 327 IVAFDTTEFVEESLSEVVKTLLVAVGLVIVVILIFLQNWRTTLIPALTIPLALIGTFAFI 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +F    N   +  +    G  V+D ++V +++  N  +    +S +    K++ E    
Sbjct: 387 KVFDFSINSLTLFGLTLATGMVVDDAIIVVEQI--NRYIEDNDMSPQAAASKAMGELSSA 444

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V TS+      +P+A + G+       FA+ +AF IV++   ++ +   +   +     
Sbjct: 445 VVATSLVLMAVFVPVAFFPGTTGALYRQFALTIAFSIVISTFLALTLTPSLCALLLKKGQ 504

Query: 829 K 829
           K
Sbjct: 505 K 505



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I  + L I   L    L G   ++     ++ LIG +  + +++ +      +L  
Sbjct: 898  PLIIILAVPLAILGALSAQLLRGFANDVYCQIGLVMLIGLASKNAILIVEFAN---QLRD 954

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +       ++  E L   + T+++  + + P+ V    G     S    +  G++VA+
Sbjct: 955  EGLPLVKAAIEASQERLRPILMTAVSTLLGIFPLVVATGAGSGSRQSLGTAVFGGMLVAS 1014

Query: 810  SSSIFIAAPILLFIYDWRAK 829
              S+F+   + + I     K
Sbjct: 1015 FLSLFVVPILYIVIKMTTEK 1034


>gi|88596129|ref|ZP_01099366.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218562707|ref|YP_002344486.1| preprotein translocase subunit SecD [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|88190970|gb|EAQ94942.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360413|emb|CAL35210.1| protein-export membrane protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284926322|gb|ADC28674.1| preprotein translocase subunit SecD [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315926737|gb|EFV06114.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315929923|gb|EFV09081.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 526

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 289/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++  +   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSE---------RGAKINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 52  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIAKVENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + + +      I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------KGINIQSENMHYKISFTSKEVKNIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTVAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS 218

Query: 232 ------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++ PV++ + +  G+++F + 
Sbjct: 219 YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYKNAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 459 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKNNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRR 526



 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ +++++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGV-AGIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRVSIEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      KN 
Sbjct: 458 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKNN 515


>gi|332532944|ref|ZP_08408816.1| RND efflux system, inner membrane transporter CmeB
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332037610|gb|EGI74062.1| RND efflux system, inner membrane transporter CmeB
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 1044

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 178/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++PS  P               + +    
Sbjct: 8   RPIFAWVLAIVVMLAGILAI-----RSLPISQYPSIAPPA-------------VSITATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +K       +   S       +TLSF+     +    +V  
Sbjct: 50  PGASARTLEDTVTQVIEQKMKGLDGLLYMSSTSESSGSATLTLSFSAETDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +V        +++            I+    +     D +   
Sbjct: 110 KLATATPLLPEAVQRQGVVVAKSARNFLMVYAFVSKDGSMTNIDIGDYVSSNVQDIVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP++L+    T A +S      N        G     D  
Sbjct: 170 EGVGEVQLFGSQ-YAMRIWLDPAKLQNYKLTPADISASISAQNAQVSAGQLGGMPAVDGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    +                 +       
Sbjct: 229 QLNATVTAQSRL-------------QTPEQFKQILVKTNPDGSFVRLEDVAKVELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L+         ++          
Sbjct: 276 RVVARYDGQPASGLGIKLASGANALDTAEGVKKAIEELKPFFPEGLDAVIPYDTTPFVSL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L   G ++   ++
Sbjct: 336 SIEKVIHTLIEAVVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGILYTFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERLMTEEKLSALEATRKSMDEIKGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------- 522
           + FF G      R F+IT+  ++ +S+  A+ +  A+   +++   + +           
Sbjct: 456 MAFFSGSTGIIYRQFSITLVSAMGLSVLVALILTPALCATLLKPSHVHTNDTLFGRFFTG 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +             +      ++ + +   ++                  + +G +   
Sbjct: 516 FNRGFDKTNSGAQSFVGRMLTHSKRYLLIYGVIVGGMVYVFSSLPTAFLPDEDQGILFNQ 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V              ++ ++   ++ Q+      F V      G           +K   
Sbjct: 576 VSLPAGSTTQQTLEVVKKVENHFLNDQSEAVNGIFTVTGFSFAGSGQNSAIAFVNLKHWD 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                  ++Q            +    +  
Sbjct: 636 ERQRDELSVQGVAGKAMGYFSTIKEAFVFA 665



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   +  +      + L        +++     ++   +++    
Sbjct: 258 SFVRLEDVAKVELGGESYRVVARYDGQPASGLGIKLASGANALDTAEGVKKAIEELKPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I K I  +I + + + + +++  + +   L     + + + 
Sbjct: 318 PEGLDAVIPYDTTPFVSLSIEKVIHTLIEAVVLVFVVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G    FG   N   + A++  IG  V+D +VV + +     +    +S  +   KS+
Sbjct: 378 GTFGILYTFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERLMTEEKLSALEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +E  G  V  +M      +PMA + GS       F+I +   + ++   ++ +   +   
Sbjct: 436 DEIKGALVGIAMVLSAVFIPMAFFSGSTGIIYRQFSITLVSAMGLSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 74/250 (29%), Gaps = 19/250 (7%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +       V  S   S   +     +   N                 
Sbjct: 777  QSRMVPEDLNKWYVRNDNGDMVPFSAFASAYWTYGSPRLERYNGFSAMEIQGSAAPGYST 836

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   +  +VK+    I    T  + +         L+        +S + + + +   
Sbjct: 837  GQAMDEMERLVKQLPNGISSEWTGISFQERSSSGQAPLLY------GLSLLFVFLCLAAL 890

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFG--IEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            ++ W         +I+ +       A  G  +  ++     +LT IG +  + +++ +  
Sbjct: 891  YESWSVPFA--VMMIVPLGIFGAIMAALGGGLSNDIYLQVGLLTTIGLASKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--WGGSVIGSFAIPMA 802
               +      +   D    ++   L   + TSMA    VLP+A+    GS   +    + 
Sbjct: 949  ---IHKMEEGLGLVDAAIAAVRLRLRPILMTSMAFICGVLPLAIASSAGSGAQN---ALG 1002

Query: 803  FGIVVAASSS 812
              I+    +S
Sbjct: 1003 ISIIGGTLAS 1012


>gi|320177105|gb|EFW52121.1| RND efflux system, inner membrane transporter CmeB [Shigella
           dysenteriae CDC 74-1112]
          Length = 620

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 152/552 (27%), Gaps = 46/552 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +     +K +         
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-----LKPVSAEHHENKG 509

Query: 533 LIPDCIAIQFMR 544
                    F  
Sbjct: 510 GFFGWFNTTFDH 521



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|26988119|ref|NP_743544.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida KT2440]
 gi|71153369|sp|Q88N31|TTGB_PSEPK RecName: Full=Probable efflux pump membrane transporter TtgB
 gi|71153830|sp|P0C070|MEPB_PSEPU RecName: Full=Multidrug/solvent efflux pump membrane transporter
           MepB
 gi|24982848|gb|AAN67008.1|AE016329_3 multidrug/solvent RND transporter TtgB [Pseudomonas putida KT2440]
 gi|156713287|dbj|BAF76384.1| MepB [Pseudomonas putida]
          Length = 1050

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/548 (11%), Positives = 150/548 (27%), Gaps = 33/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIAVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L +   T   +       N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L     P    +           S S 
Sbjct: 280 QFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++ +S+  A+    A+   +++  K           F      
Sbjct: 460 GGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRN 519

Query: 538 IAIQFMRA 545
                   
Sbjct: 520 FDRSVNGY 527



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 89/247 (36%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   +S Q      + L        +++   + L    K +    
Sbjct: 258 SQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   I  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +   
Sbjct: 436 EQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPLKK 502



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 71/185 (38%), Gaps = 10/185 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            E + +       L +       G     +L    +  +  +   + +++    +   W  
Sbjct: 837  EAMAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPAL-FALSVLFVFLCLAALYESWSI 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  + L I   L   +L G+  ++  +  +LT IG +  + +++ +  ++   L+ 
Sbjct: 896  PIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKE---LHE 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  D   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A 
Sbjct: 953  QGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISAT 1012

Query: 810  SSSIF 814
              +IF
Sbjct: 1013 VLAIF 1017


>gi|157962889|ref|YP_001502923.1| preprotein translocase subunit SecD [Shewanella pealeana ATCC
           700345]
 gi|157847889|gb|ABV88388.1| protein-export membrane protein SecD [Shewanella pealeana ATCC
           700345]
          Length = 604

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 147/516 (28%), Positives = 261/516 (50%), Gaps = 30/516 (5%)

Query: 24  PNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF 80
           P  +  ++    P+ +     + I LGLDLRGG   +L+V+ +         + + +R F
Sbjct: 103 PTEITLTLAPAAPNWLLSLGFSPIKLGLDLRGGVQFLLDVEIEPVYKLQYNTFIESVRQF 162

Query: 81  LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           +++E +   +++Q  +            +  A ++      V   +N       +  + E
Sbjct: 163 VRQEALYGVTVQQQVDG---------NVQISAQELEQR-GAVRQFINKQYPNWQVSNSGE 212

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
           + +S+ +++     +    ++Q+++I+R RI+Q+GI+E+ +QR G HRI I+LPG QDP+
Sbjct: 213 QSLSVGMTEAEKITIRDLTVKQNLQIMRSRIEQLGITEAVVQRQGEHRIRIELPGVQDPA 272

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
             + ++G TA ++F++V             + L+D  G    V  +  + G H+  A A+
Sbjct: 273 AAKSVIGATASLAFYQVKQ-----PGSVNAKTLKDEQGKPVYVARRAVLGGEHIVDARAS 327

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI-----------N 309
                   VV     E G+        +          +        I            
Sbjct: 328 LGEMGLPEVVIHLDREGGSMMSDFSRDNIGKPMATSYSEYSRDDNGQIRQTTEVISVATI 387

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           QA    +  I+G      A  LA +LRAGS+   + IVEER +G  LG ++I  G  A+ 
Sbjct: 388 QAQLGDRFSITGAGDYAEAQQLALLLRAGSMTAPVTIVEERTIGPSLGEENITNGFSALA 447

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAV 428
            G+ + +LFM + Y + G +A+ ++  N+IL   L++L+  A LTLP IAG+VL +G+AV
Sbjct: 448 LGMGVTLLFMGLWYRRLGWIANVALVANMILIFGLMALIPGAVLTLPGIAGLVLTVGMAV 507

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D+N+L+ ERI+++ ++ +S   ++D GF  A+STI D+N T +I  VVL+  G G ++GF
Sbjct: 508 DTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFSTIVDANFTTMITAVVLYAIGNGPIQGF 567

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           A+T+GL +L SMFT I   RA++ +       +++ 
Sbjct: 568 ALTLGLGLLTSMFTGIFASRALVNWAYGRDFSRNVK 603



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 89/256 (34%), Gaps = 5/256 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    +            +    +  L       G     
Sbjct: 345 GSMMSDFSRDNIGKPMATSYSEYSRDDNGQIRQTTEVISVATIQAQLGDRFSITGAGDYA 404

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I  G   + +     L+++ + ++  
Sbjct: 405 EAQQLALLLRAGSMTAPVTIVEERTIGPSLGEENITNGFSALALGMGVTLLFMGLWYR-R 463

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   L+ ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 464 LGWIANVALVANMILIFGLMALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 523

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID+  +      V  +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 524 ---GRSFAHAIDRGFDSAFSTIVDANFTTMITAVVLYAIGNGPIQGFALTLGLGLLTSMF 580

Query: 811 SSIFIAAPILLFIYDW 826
           + IF +  ++ + Y  
Sbjct: 581 TGIFASRALVNWAYGR 596


>gi|119489528|ref|ZP_01622289.1| protein export protein SecF [Lyngbya sp. PCC 8106]
 gi|119454607|gb|EAW35754.1| protein export protein SecF [Lyngbya sp. PCC 8106]
          Length = 330

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 65/254 (25%), Positives = 132/254 (51%), Gaps = 7/254 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      P++L  VR  L +  +G+ S Q  D +     R                 ++
Sbjct: 59  SVSENCQGPIELDQVREVLANQGLGNSSIQLLDKDPLQQDRQIVSIRTKSLNVEERTQLQ 118

Query: 640 KKITEIVPLSTIQNT--EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             ++E + +   ++T  + VGP + R++   G+  ++++   + IY+  RF++ +A+ A 
Sbjct: 119 DGLSEAIGVFDPESTQIDTVGPTLGRQIFISGLKALLVAFAGITIYLTFRFQFDYAVFAF 178

Query: 698 TTLILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             L  D+  T G F++ G+    E +   + A+LT+IG+SVND VV+YDR+R+ +    T
Sbjct: 179 VALFHDVFVTAGVFSILGLVLGVEVDSLFLVALLTIIGFSVNDTVVIYDRIREVIAKNPT 238

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            +    ++D ++N+TL RS+ T++   + ++ + ++GG  +   A+ +  G +  A SSI
Sbjct: 239 -LPINQVVDDAVNQTLARSINTTLTTMLPLVCIFLFGGETLKYLALALLVGFIAGAYSSI 297

Query: 814 FIAAPILLFIYDWR 827
           FIA+ +L +  + +
Sbjct: 298 FIASTLLAWWRNRQ 311


>gi|104783332|ref|YP_609830.1| multidrug/solvent RND transporter TtgB [Pseudomonas entomophila
           L48]
 gi|95112319|emb|CAK17046.1| multidrug/solvent RND transporter TtgB [Pseudomonas entomophila
           L48]
          Length = 1050

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 191/687 (27%), Gaps = 39/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AISVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNSDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLLVIGLVSEDGSMSKDDLANYIVSNMQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L +   T   +       N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNKFQLTPVDVRTAVAAQNVQVSSGQLGGLPALPGTQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFEKILLKVNNDGSQVRLGDVATVGLGGENYAISA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S S 
Sbjct: 280 QYNGMPASGLAVKLATGANALDTAKALRKTISDLEPFFPPGVKAVFPYDTTPVVTESISG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINPLSRF 531
           GG      R F+IT+  ++ +S+  A+    A+   +++  K       K       +R 
Sbjct: 460 GGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPLKKGEHHVAKRGFFGWFNRN 519

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           F        + +          +L     +  +          F      GVL  +    
Sbjct: 520 FDRSVVGYERSVGTILRNKIPFLLAYALIVVGMIWLFARIPTAFLPEEDQGVLFAQVQTP 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +   +    + +  +     D E + +  +    G + A       +   + +     + 
Sbjct: 580 AGSSAERTQVVVDQMREYLLDKEADTVASVFTVNGFNFAGRGQSSGMAFIMLKPWDERSK 639

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI 678
           +N+     + ++         ++ +  
Sbjct: 640 ENSVFALAQRAQMHFFSFRDAMVFAFA 666



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 89/247 (36%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +   IS Q      + L        +++   + L      +    
Sbjct: 258 SQVRLGDVATVGLGGENYAISAQYNGMPASGLAVKLATGANALDTAKALRKTISDLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   I  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +   
Sbjct: 436 EQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPLKK 502



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 71/185 (38%), Gaps = 10/185 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            E + +       L T       G     +L    +  +  +   + +++    +   W  
Sbjct: 837  EAMAEVERIAGELPTGIGYSWTGMSYEEKLSGSQMPAL-FALSVLFVFLCLAALYESWSI 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  + L I   L   +L G+  ++  +  +LT IG +  + +++ +  ++   L+ 
Sbjct: 896  PIAVVLVVPLGIIGALLATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKE---LHE 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  D   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A 
Sbjct: 953  QGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISAT 1012

Query: 810  SSSIF 814
              +IF
Sbjct: 1013 VLAIF 1017


>gi|193211688|ref|YP_001997641.1| preprotein translocase subunit SecF [Chlorobaculum parvum NCIB
           8327]
 gi|193085165|gb|ACF10441.1| protein-export membrane protein SecF [Chlorobaculum parvum NCIB
           8327]
          Length = 308

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 151/309 (48%), Gaps = 11/309 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             +     I FM  R     IS +  +  +  LF  GLNYGIDFKGG ++ +   +PVD+
Sbjct: 1   MRLFQKSNINFMGHRKIAYVISTVLLVAGLVSLFVRGLNYGIDFKGGSEVVIRFEKPVDV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + VRS +    +  +  Q      +  + L+     + A  + L             + I
Sbjct: 61  ATVRSIMRQANVSGMVKQY---GMDRSLLLKTDFQGNTATLKSLISNSLATNLASNPAEI 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            + + VGP I+ ++    +  +  + I +L+Y+ IRF++ FA+  +  +  D+   LG F
Sbjct: 118 LSIQAVGPSIASDMKMSALKALAAALIGILLYVSIRFEFKFAVAGVVAIFHDVLTVLGLF 177

Query: 712 A-------LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           +          +E + + +AA LT+ GYS+ D VVVYDR+R+ ++       +  + ++S
Sbjct: 178 SLLGGLFDYMPLEVDQSIIAAFLTIAGYSITDTVVVYDRIRERLR-GQKPSDYERIFNES 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +N+TL R+V TS    ++VL +  + G  I  FA  M  GI++   SSIF+AAPI+    
Sbjct: 237 LNQTLSRTVITSGTTMLTVLVLFFFAGPAIRGFAFAMFAGILIGTYSSIFVAAPIVFDWQ 296

Query: 825 DWRAKNARI 833
                  ++
Sbjct: 297 RRSKNPIKL 305


>gi|146308532|ref|YP_001188997.1| preprotein translocase subunit SecF [Pseudomonas mendocina ymp]
 gi|145576733|gb|ABP86265.1| protein translocase subunit secF [Pseudomonas mendocina ymp]
          Length = 305

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 89/290 (30%), Positives = 165/290 (56%), Gaps = 5/290 (1%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I+FM  R     ++++ ++  +  LF+ GLN+G+DF GG  + +   +  DL V+
Sbjct: 1   MIKSTIRFMAVRNIAFAMTLVLTVVGLGALFSKGLNFGLDFTGGTLIELQYEQAADLEVI 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           +  L      D   Q+F    + LVRL     D  ++         +  +      ++  
Sbjct: 61  KRELGQAGYTDAVVQSFGASTDVLVRLAGDDPDLGSRVAEA----LRKVDSTTRFEVKRV 116

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E VGP++  EL  +G + ++++   +++Y+  RF+W F +GAI +L+ D+  TLG  A F
Sbjct: 117 EFVGPQVGEELRDQGGIAMLLALGGIMLYLAFRFQWKFGVGAIASLVHDVIITLGVLAFF 176

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            + F+LT +AA+L +IGYS+ND +++YDR+R+N ++     S  + ID SI +TL R++ 
Sbjct: 177 RVPFDLTVLAAILAMIGYSLNDTIIIYDRIRENFRVLRK-ASLIENIDISITQTLMRTIA 235

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           TS++  +++L +  +GG V+ +FA+ +  G+VV   SS++I A +L+++ 
Sbjct: 236 TSLSTALALLALLFFGGDVLAAFALTLLVGVVVGTYSSVYIGATVLVWLK 285



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 48/189 (25%), Positives = 99/189 (52%), Gaps = 5/189 (2%)

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGL 388
            +A  LR      +  +     VG  +G +   +G  A++  L  I+L++   +  K+G+
Sbjct: 97  RVAEALRKVDSTTRFEVKRVEFVGPQVGEELRDQGGIAMLLALGGIMLYLAFRFQWKFGV 156

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR--KNQ 446
            A  S+  +VI+TL +L+       L  +A I+  IG +++  I++ +RIRE  R  +  
Sbjct: 157 GAIASLVHDVIITLGVLAFFRVPFDLTVLAAILAMIGYSLNDTIIIYDRIRENFRVLRKA 216

Query: 447 SVFCSLDMGFSRA-YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           S+  ++D+  ++    TI  S  TAL    +LFF GG  +  FA+T+ + +++  ++++ 
Sbjct: 217 SLIENIDISITQTLMRTIATSLSTALALLALLFF-GGDVLAAFALTLLVGVVVGTYSSVY 275

Query: 506 IVRAMMIFI 514
           I   +++++
Sbjct: 276 IGATVLVWL 284


>gi|17549039|ref|NP_522379.1| drug efflux transmembrane protein [Ralstonia solanacearum GMI1000]
 gi|17431290|emb|CAD17969.1| probable drug efflux transmembrane protein [Ralstonia solanacearum
           GMI1000]
          Length = 1053

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/684 (11%), Positives = 178/684 (26%), Gaps = 39/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L           + ++PS  P                      
Sbjct: 8   RPIFAWVLAIIVMLAGALSIA-----TLPIAQYPSIAPPAV---------AITATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    L        +        ITL+F +    +    +V   L  
Sbjct: 54  AKTLEDTVTQIIEQKMKGLDHLSYMASTSESSGTVTITLTFDNGTDPDTAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      + +     +    +  + S  +     D +   E   
Sbjct: 114 ATPLLPQEVQQQGVQVTKSATNFLNVLAFTSEDGSMNGSDLSDYVAANVQDALSRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   +       N        G     D+     
Sbjct: 174 DTTLFGSQ-YAMRIWLDPHKLSNFSLTPLDVKTAIQAQNAQVSAGQLGGMPAADNQQINA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      +   +    +        I           
Sbjct: 233 TITSQTRL-------------KTAEAFGNILLRTQADGAQVRLRDVARIELGSESYSTVG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T++      A L     P                S   
Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFPPGMKVQKPYDTTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++  +V
Sbjct: 340 VVRTLVEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAACGFTINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPREATRKSMGQITGALIGVALVLAAVFVPMAFF 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F+IT+  ++ +S+  A+ +  A+   +     +K +              
Sbjct: 460 KGSTGVIYRQFSITIVSAMTLSVLVAMVLTPALCATL-----LKPVRKGHAQATTGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R      GI           +  +G+ + +   G ++L V      D   +   
Sbjct: 515 FNRTFDRGNHRYQGIVRHMLGKQRRYMAMYGVLFAMVVVGFMKLPVGFLPDEDQGTLF-V 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L  L  G  + +  D  +           ++V+    +       +              
Sbjct: 574 LAQLPPGATNARTEDVLRQVEHHFLVDQKEAVSGVFSVAGFSFAGSGQNMGFAFVKLRPW 633

Query: 658 GPKISRELIRKGIVGVIISAIAML 681
             +    L   G+V       A +
Sbjct: 634 NERKGEALSVSGVVARAFGFFATI 657



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 84/246 (34%), Gaps = 6/246 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +      +        L        +++   + ++    ++    P
Sbjct: 259 QVRLRDVARIELGSESYSTVGRYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          R  I + +  ++ +   + + +++  + +   L     + + +  
Sbjct: 319 PGMKVQKPYDTTPFVRISIEEVVRTLVEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G  A  G   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ 
Sbjct: 379 TFGVLAACGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPREATRKSMG 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  +  ++      +PMA + GS       F+I +   + ++   ++ +   +   +
Sbjct: 437 QITGALIGVALVLAAVFVPMAFFKGSTGVIYRQFSITIVSAMTLSVLVAMVLTPALCATL 496

Query: 824 YDWRAK 829
                K
Sbjct: 497 LKPVRK 502



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 74/261 (28%), Gaps = 10/261 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +   A   V  +       S     +   N       L   +     
Sbjct: 776  PFRMNPEDIDKWYVRNSAGTMVPFTAFARVDWSSGSPRLERYNGVPSMEILGMAKPGSAS 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            S     ++E    K+             +     S +      + ++I  + +     + 
Sbjct: 836  SGEALAIVEAAVTKLPA-GIGYAWTGLSLQEKASSGQTTLLYTLSILIVFLCLA---ALY 891

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L +   L    L     ++     +LT IG +  + +++ +  ++ 
Sbjct: 892  ESWAIPFSVIMVVPLGVLGALLGAILTWKMNDVYFQVGLLTTIGLASKNAILIVEFAKE- 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
              L    +   +    +    L   + TS+A  + V+PM      G     +    +  G
Sbjct: 951  --LNAQGMRVVEAAMTAARMRLRPILMTSLAFILGVVPMVTGSGAGAGAQHALGTAVIGG 1008

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++     +IF      + +  
Sbjct: 1009 MLSGTVLAIFFVPLFFVLVRG 1029


>gi|94494958|ref|ZP_01301539.1| multidrug efflux protein, RND family [Sphingomonas sp. SKA58]
 gi|94425224|gb|EAT10244.1| multidrug efflux protein, RND family [Sphingomonas sp. SKA58]
          Length = 1046

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 79/684 (11%), Positives = 187/684 (27%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GL   L        + ++P   P            G         
Sbjct: 9   RPIFAWVIAIGIMLAGLGAML-----SLPIAQYPDIAPPGV---------GISATYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + +        S       +IT++F      +    +V   +Q 
Sbjct: 55  AETVETSVTQVIEQQLTGIDGLMYFSSSSTNNGQARITVTFQKGTDPDTAQVQVQNKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    ++  L  T ++   +++     +       + +  ++    D I   +   
Sbjct: 115 ALSRLPNAVQQQGLTVTKQQTDFLLVVGLYDETDTVTQADVADYLVNNFQDPIARIDGIG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L  +    + +       N        G     +      
Sbjct: 175 ATQVFGSQ-YAMRIWLDPFKLATVKLMPSDVQSAIQSQNVEVSAGQIGADPAPEGQQLNA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +             +           
Sbjct: 234 TVRARSRL-------------QTPEQFRNIIVKTQSDGSVVHLSDVARVELGNESYTTSA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +              T E      A L A        +           S   
Sbjct: 281 RLNGHPASGMALQLAPGADALKTAELVKAKVADLSANLPHGYKVVYPRDTTPFIQLSVDE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+F+ +   +  LV   ++ + ++ T  +L+L G ++   ++ G+V
Sbjct: 341 VIHTLIEAVVLVVIVMFLFLQSWRATLVPAIAVPVVLLGTFGILALFGYSINTLTLFGMV 400

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +           +    +      + + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERLMEEEGLSPRDATIKSMGEIGGALVGIALVLSAVLLPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLS 529
           GG      R F+IT+  S+L+S+  A+ +  A+   +         +       +     
Sbjct: 461 GGSTGVIYRQFSITIVSSMLLSVLVALILSPALCATLLKASAHDQRQRGWAGKFNRWFDR 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                         +   +     ++ ++ ++           ++ +G +   V      
Sbjct: 521 LTRGYVHRTEQILGKRILFWSAYVVILAVLALLFTRLPTSFLPVEDQGQVMAQVSLPAGA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S      E L+   ++ +  +    F++      G      +    +          +
Sbjct: 581 KSSRTAVAAEQLRQYFMNDEKDNVAFAFILTGFSFQGQGENVAQGFINLAPWDERKGSAN 640

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
           +         K    +    ++ +
Sbjct: 641 SAGAIAERANKQLSAIRDAKVLAM 664



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/209 (19%), Positives = 84/209 (40%), Gaps = 8/209 (3%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            +      +  +   +     +   ++T         E+I   I  V++  I M +++  
Sbjct: 303 TAELVKAKVADLSANLPHGYKVVYPRDTTPFIQLSVDEVIHTLIEAVVLVVIVMFLFLQ- 361

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              W   L     + + +  T G  ALFG   N   +  ++  IG  V+D +VV + +  
Sbjct: 362 --SWRATLVPAIAVPVVLLGTFGILALFGYSINTLTLFGMVLSIGLLVDDAIVVVENV-- 417

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    +S RD   KS+ E  G  V  ++     +LPMA +GGS       F+I +  
Sbjct: 418 ERLMEEEGLSPRDATIKSMGEIGGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVS 477

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++++   ++ ++  +   +    A + R
Sbjct: 478 SMLLSVLVALILSPALCATLLKASAHDQR 506



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 75/216 (34%), Gaps = 9/216 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             ++     AQ         +I E+        +        +E +  G   ++     ++
Sbjct: 822  SFEIQGQAAQGASSGEAMDRIVELQKQLPAGTSYAWSGLSYQEQLSGGQAPLLYGLSVLV 881

Query: 682  IYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++    +   W   L  +  + L +   +      G+E N+     +LT +G +  + +
Sbjct: 882  VFLCLAALYESWSIPLAVLLVIPLGLVGAVIAVWARGLENNIFFQVGLLTTMGLAAKNAI 941

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ +     +  +    +  D   ++        + TS+A    V+P+A+    G     
Sbjct: 942  LIVE--FAELAHHQ-GKNAWDAALEAARLRFRPILMTSLAFIAGVVPLAIATGAGAQSRV 998

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    +  G+  A   +IF+     + I     K+ 
Sbjct: 999  AIGTAVIGGMTTATLLAIFLVPLFFVTILRLFGKDK 1034


>gi|260554990|ref|ZP_05827211.1| AdeB [Acinetobacter baumannii ATCC 19606]
 gi|260411532|gb|EEX04829.1| AdeB [Acinetobacter baumannii ATCC 19606]
          Length = 1036

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 81/685 (11%), Positives = 179/685 (26%), Gaps = 44/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 8   RRPVFAWVIAIFIIIFGLLSI-----PKLPIARFPSVAPP-------------QVNISAT 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +IT +F      E     V 
Sbjct: 50  YPGATAKTINDSVVTLIERELSGVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQVVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 170 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S +              +        +            N+      
Sbjct: 229 QLITIPLSAQGQLSSLE-------------QFKNISLKSKTNGSVIKLSDVANVEIGSQA 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 276 YNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPEGMEFSIPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 336 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +         S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLSPKDATSKAMKEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      + F +TM +SIL S   A+ +  A+   I++            + F 
Sbjct: 456 PMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL---ANRPV 589
              D +  ++       +  ++   +  + +               +             
Sbjct: 516 RSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFAGMKYWPTAFMPEEDQGWFMTSFQ 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S   +      +        D             G S A   V              S
Sbjct: 576 LPSDATAERTRNVVNQFENNLKDNPDVKSNTTILGWGFSGAGQNVAVAFTTLKDFKERTS 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
           +                    + V+
Sbjct: 636 SASKMTSDVNTSMANSTEGETMAVL 660



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V     +    +++   +P 
Sbjct: 261 IKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 321 GMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  +S +D   K
Sbjct: 378 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLSPKDATSK 434

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPMA   GSV      F + M+  I+ +A  ++ +   +
Sbjct: 435 AMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPAL 493



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 786  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 845

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 846  GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 897

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 898  PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 954

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 955  TVAAAKLRLRPILMTSLAFTCGVIPLVIASGAS-SETQHALGTGVFGGMISATILA 1009


>gi|71152256|sp|Q9KJC2|ARPB_PSEPU RecName: Full=Antibiotic efflux pump membrane transporter ArpB
 gi|8163736|gb|AAF73832.1|AF183959_3 inner membrane transporter protein [Pseudomonas putida]
 gi|313500388|gb|ADR61754.1| ArpB [Pseudomonas putida BIRD-1]
          Length = 1050

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/548 (11%), Positives = 150/548 (27%), Gaps = 33/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIAVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L +   T   +       N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L     P    +           S S 
Sbjct: 280 QFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++ +S+  A+    A+   +++  K           F      
Sbjct: 460 GGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRN 519

Query: 538 IAIQFMRA 545
                   
Sbjct: 520 FDRSVNGY 527



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 89/247 (36%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   +S Q      + L        +++   + L    K +    
Sbjct: 258 SQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   I  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +   
Sbjct: 436 EQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPLKK 502



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 71/185 (38%), Gaps = 10/185 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            E + +       L +       G     +L    +  +  +   + +++    +   W  
Sbjct: 837  EAMAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPAL-FALSVLFVFLCLAALYESWSI 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  + L I   L   +L G+  ++  +  +LT IG +  + +++ +  ++   L+ 
Sbjct: 896  PIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKE---LHE 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  D   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A 
Sbjct: 953  QGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISAT 1012

Query: 810  SSSIF 814
              +IF
Sbjct: 1013 VLAIF 1017


>gi|307129949|ref|YP_003881965.1| multidrug efflux system protein [Dickeya dadantii 3937]
 gi|306527478|gb|ADM97408.1| multidrug efflux system protein [Dickeya dadantii 3937]
          Length = 1048

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 181/686 (26%), Gaps = 49/686 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  M+   G L  L     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIMVMLTGTLAIL-----KLPIAQYPTIAPPA-------------VQITANY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +   +    ++  + + K      +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTLQDTVTQVIEQNMNGIDKLLYMSSNSDSSGTVQITLTFDADANPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++     D       + +  +     D I   
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVQKSSSSFLMVLGFISDDNNMTQQDIADFVGASIKDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     TT+ +     + NN       G        
Sbjct: 170 RGVGDTQLFGAQ-YAMRIWLDPDKLNNYQLTTSDVVSAIQVQNNQIAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        I       
Sbjct: 229 KLNASIIAQTRL-------------NSPEQFGNILLKVNQDGSQVRLNNVARIELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L++        +           
Sbjct: 276 SVIARYNGRPAAGLGIKLATGANALDTASAVKAEITKLQSTFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++LS  G ++   ++
Sbjct: 336 SIYEVVKTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFSILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPL 528
           + F GG      R F++T+  S+++S+  A+ +  A+   I        +K         
Sbjct: 456 MAFSGGSTGAIYRQFSVTIVSSMVLSVLVALILTPALCATILKPITNHGEKKGFFGWFNR 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLA 585
                            R  G  + +   + +   L    L       + +G +   V  
Sbjct: 516 LFDKSTHHYTNSVANILRSTGRYVVVYLIVVAGLGLMFTRLPSSFLPQEDQGVLLTMVQL 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                    +  L+ +    +  +  + +  F V      G           +K      
Sbjct: 576 PVGATQESTQKVLDQVNDYYLQHEKENVKSVFTVNGFGFAGRGQNMGIAFASLKDWDERS 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIV 671
              + +            ++    ++
Sbjct: 636 GAANKVDAIIGRAFGAFSQIKEALVI 661



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 75/194 (38%), Gaps = 6/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                ++    K+    P               +  I + +  ++ + + + + +++  +
Sbjct: 301 DTASAVKAEITKLQSTFPAGLKVVYPYDTTPFVKISIYEVVKTLLEAIVLVFVVMYLFLQ 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + +  T    + FG   N   + A++  IG  V+D +VV + +    
Sbjct: 361 NFRATLIPTIAVPVVLLGTFSILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S ++   KS+ +  G  V  ++      +PMA  GGS       F++ +   +
Sbjct: 419 VMAEEGLSPKEATRKSMGQIQGALVGIALVLSAVFIPMAFSGGSTGAIYRQFSVTIVSSM 478

Query: 806 VVAASSSIFIAAPI 819
           V++   ++ +   +
Sbjct: 479 VLSVLVALILTPAL 492



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 7/184 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWYFA 693
            E +         L      +  G      L       +II  + +  L    +   W   
Sbjct: 836  EAMALMEELAAQLPPGIGFDWTGMSYQERLAGNQAPALIIISAIVVFLCLAALYESWSIP 895

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   +    L G+E ++     +LT IG S  + +++ +  +  M+    
Sbjct: 896  FSVMLVVPLGVFGAVMAAGLRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 955

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 956  G--LVEATLDAVRMRLRPILMTSLAFILGVVPLVISTGAGSGAQNAVGTGVMGGMITATV 1013

Query: 811  SSIF 814
             +I+
Sbjct: 1014 LAIY 1017


>gi|147672028|ref|YP_001215472.1| preprotein translocase subunit SecD [Vibrio cholerae O395]
 gi|146314411|gb|ABQ18951.1| protein-export membrane protein SecD [Vibrio cholerae O395]
 gi|227015244|gb|ACP11453.1| protein-export membrane protein SecD [Vibrio cholerae O395]
          Length = 612

 Score =  191 bits (485), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 151/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRT 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   S++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVSVQAMGND---AFEVRTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|184158144|ref|YP_001846483.1| cation/multidrug efflux pump [Acinetobacter baumannii ACICU]
 gi|332872694|ref|ZP_08440661.1| RND transporter, HAE1 family [Acinetobacter baumannii 6014059]
 gi|183209738|gb|ACC57136.1| Cation/multidrug efflux pump [Acinetobacter baumannii ACICU]
 gi|332739088|gb|EGJ69948.1| RND transporter, HAE1 family [Acinetobacter baumannii 6014059]
          Length = 1036

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 81/685 (11%), Positives = 179/685 (26%), Gaps = 44/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 8   RRPVFAWVIAIFIIIFGLLSI-----PKLPIARFPSVAPP-------------QVNISAT 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +IT +F      E     V 
Sbjct: 50  YPGATAKTINDSVVTLIERELSGVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQVVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 170 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S +              +        +            N+      
Sbjct: 229 QLITIPLSAQGQLSSLE-------------QFKNISLKSKTNGSVIKLSDVANVEIGSQA 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 276 YNFAILENGKPATAAAIQLSPGANAVKTAEVVRAKIEELKLNLPEGMEFSIPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 336 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +         S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLSPKDATSKAMKEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      + F +TM +SIL S   A+ +  A+   I++            + F 
Sbjct: 456 PMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL---ANRPV 589
              D +  ++       +  ++   +  + +               +             
Sbjct: 516 RSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFTGMKYWPTAFMPEEDQGWFMTSFQ 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S   +      +        D             G S A   V              S
Sbjct: 576 LPSDATAERTRNVVNQFENNLKDNPDVKSNTTILGWGFSGAGQNVAVAFTTLKDFKERTS 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
           +                    + V+
Sbjct: 636 SASKMTSDVNSSMANSTEGETMAVL 660



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V    V+    +++   +P 
Sbjct: 261 IKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEVVRAKIEELKLNLPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 321 GMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  +S +D   K
Sbjct: 378 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLSPKDATSK 434

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPMA   GSV      F + M+  I+ +A  ++ +   +
Sbjct: 435 AMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPAL 493



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 786  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 845

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 846  GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 897

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 898  PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 954

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 955  TVAAAKLRLRPILMTSLAFTCGVIPLVIASGAS-SETQHALGTGVFGGMISATILA 1009


>gi|312879379|ref|ZP_07739179.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Aminomonas paucivorans DSM 12260]
 gi|310782670|gb|EFQ23068.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Aminomonas paucivorans DSM 12260]
          Length = 1051

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/557 (12%), Positives = 160/557 (28%), Gaps = 40/557 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +  +        + +FP  +P               + +   
Sbjct: 8   RRPILASVLSIVILLAGGIAMV-----TLPVAQFPDIVPP-------------QVQVSAV 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L + +     +   +     +    + ++FA     +     V 
Sbjct: 50  YPGADPEVIAQTVASPLENRINGVDDMIYMNSVSSGSGAMTLNVTFAIGTDPDQATINVN 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   S L  D ++  +         +++   N        I  +   +   +D +  
Sbjct: 110 NRVQMALSSLPDDVRRYGVTVQKVSPNMLLMISLNSPDGRYDTIYLNNYALVNLVDDMKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                  +        +     P RL QL  T + +       N+       G +    +
Sbjct: 170 IPGVGDAVIYGSKDYAMRVWLRPDRLAQLKLTPSDVIQVIQEQNSQFAVGRLGQKPTEAN 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               +L+  +  +S                +    I          +      +      
Sbjct: 230 LDRNFLMTTRGRLS-------------TPEEFENIILRANPDGTVLYLRDVARVELGAKE 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +     +      A L        +  +         
Sbjct: 277 YNFDGTMNGKPTIPIGIMLAPGANALKVADLVKEKLAELSQRFPQGVVASIPYDTTEFVR 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F+ +   +  L+   ++ ++++ T A + L G ++   +
Sbjct: 337 ISIEEVVKTLMEAMVLVFLVVFLFLQNWRATLIPCLAVPVSIVGTFAGMKLFGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +     +++ +   +           +    +      V
Sbjct: 397 LFGMVLAIGIVVDDAIVVLENVDRHMEEDRLAPKEAALKAMEEVTGPVIAIVLVLASVFV 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG      + FAIT+ +S++IS F A+++  A+   +++ +      +       
Sbjct: 457 PVAFMGGMTGQMYKQFAITLSVSVVISGFVALTLTPALCGILLKPRHGDEKFVLFRKFNE 516

Query: 533 LIPDCIAIQFMRARFWG 549
                        RF  
Sbjct: 517 AFESLTRSYSDGVRFLL 533



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 66/175 (37%), Gaps = 7/175 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                    +E     +V   +  I + + +  +++ W   L  +  +   +   +    L
Sbjct: 857  WTGSAYQEQETGSATVVAFGLGIIMVFLILAAQYEKWSLPLAVVLAVPFALFGAILAVWL 916

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+  ++    A++TLIG +  + +++ +     +  +   +S  +   ++ +      +
Sbjct: 917  RGLANDIYFQIALVTLIGLASKNAILIVEFA---LMRHQQGLSLFEAAAEAAHLRFRPII 973

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             TS+A  +  LP+ +    G +   S    +  G++ A   +IF        I  
Sbjct: 974  MTSLAFILGCLPLMLSTGAGSASRHSIGTAVVGGMLAATGIAIFFIPSFFELIMK 1028



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + I  T     LFG   N   +  ++  IG  V+D +VV + +  +  
Sbjct: 364 WRATLIPCLAVPVSIVGTFAGMKLFGFSINTLTLFGMVLAIGIVVDDAIVVLENV--DRH 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           +    ++ ++   K++ E  G  +   +      +P+A  G   G +   FAI ++  +V
Sbjct: 422 MEEDRLAPKEAALKAMEEVTGPVIAIVLVLASVFVPVAFMGGMTGQMYKQFAITLSVSVV 481

Query: 807 VAASSSIFIAAPI 819
           ++   ++ +   +
Sbjct: 482 ISGFVALTLTPAL 494


>gi|160885092|ref|ZP_02066095.1| hypothetical protein BACOVA_03090 [Bacteroides ovatus ATCC 8483]
 gi|293368757|ref|ZP_06615361.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
 gi|156109442|gb|EDO11187.1| hypothetical protein BACOVA_03090 [Bacteroides ovatus ATCC 8483]
 gi|292636062|gb|EFF54550.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
 gi|295084685|emb|CBK66208.1| Cation/multidrug efflux pump [Bacteroides xylanisolvens XB1A]
          Length = 1010

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 89/687 (12%), Positives = 193/687 (28%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +       + I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMAGYGITPVDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T     D+   E   R              A +    
Sbjct: 233 L--------------------MHTADEFNDLIVKEENNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K  +   +   G    +  +  + IT +     + F  
Sbjct: 393 LSVGLVVDDAIVMTENIYIRIEKGMAPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ +S        FF   + +
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQSWFYAKTEPFFEGMNRL 512

Query: 539 AIQ----FMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+  R+  +  + +                  ++ +  I +       V    
Sbjct: 513 YSRSLAAFLSKRWIALPFTFITICLIGILWNAVPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISF---------QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S          +   G  N  + L+     +  Q  V E + K + +
Sbjct: 573 IRDYTEDINQLVDSILPDAEAVTARVSSGSGNVRITLKDMNERNYTQMDVAEKISKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +    +         +  + ++
Sbjct: 633 KTMARSFVQQQSSFGGRRGSMPVQYVL 659



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V + +++   ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASINEVKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ A++  +G  V+D +V+ + +          ++ ++   +   E     + 
Sbjct: 380 GFSINVLSMLAIVLSVGLVVDDAIVMTENI---YIRIEKGMAPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G        F+I ++  +++++ +++     +   +   R K +
Sbjct: 437 TTITLVAVFFPIVFMDGMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            VV+   +++I   I  +I   R K 
Sbjct: 983  VVSTLLTMYIVPAIYSYISTNRIKK 1007


>gi|298483678|ref|ZP_07001853.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. D22]
 gi|298270248|gb|EFI11834.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. D22]
          Length = 1010

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 81/609 (13%), Positives = 172/609 (28%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +       + I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMAGYGITPVDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T     D+   E   R              A +    
Sbjct: 233 L--------------------MHTADEFNDLIVKEENNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K  +   +   G    +  +  + IT +     + F  
Sbjct: 393 LSVGLVVDDAIVMTENIYIRIEKGMAPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ +S        FF   + +
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQSWFYAKTEPFFEGMNRL 512

Query: 539 AIQ----FMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+  R+  +  + +                  ++ +  I +       V    
Sbjct: 513 YSRSLAAFLSKRWIALPFTFITICLIGILWNAVPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQ 602
           +R   E + 
Sbjct: 573 IRDYTEDIN 581



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V + +++   ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPEDVHYNYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASINEVKSTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ A++  +G  V+D +V+ + +          ++ ++   +   E     + 
Sbjct: 380 GFSINVLSMLAIVLSVGLVVDDAIVMTENI---YIRIEKGMAPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G        F+I ++  +++++ +++     +   +   R K +
Sbjct: 437 TTITLVAVFFPIVFMDGMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            VV+   +++I   I  +I   R K 
Sbjct: 983  VVSTLLTMYIVPAIYSYISTNRIKK 1007


>gi|269126348|ref|YP_003299718.1| protein-export membrane protein SecF [Thermomonospora curvata DSM
           43183]
 gi|268311306|gb|ACY97680.1| protein-export membrane protein SecF [Thermomonospora curvata DSM
           43183]
          Length = 390

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 130/298 (43%), Gaps = 15/298 (5%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
                   +S L    SI  L   GL +G++F GG      A +   +  VR+ +     
Sbjct: 22  GRPKLWYSLSALLLAFSIAGLLVRGLTFGVEFTGGSVFTFKAPQ-ASIEQVRATVAEAGA 80

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
             +  Q        +        +S+      ++ +    E    +   +++IVG     
Sbjct: 81  HQVIVQETATSGWRVTT------ESLNTAEAAKVQQALAEEFGLPADRVSSQIVGSTWGD 134

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           E+  K    V+I  + +L Y+ + F+W  AL A+  L+ D+  T G +A  G E     +
Sbjct: 135 EITEKAWQAVLIFLLLILGYLSVAFEWRMALAAVVALVHDLVITAGVYAWSGFEVTPATL 194

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLY---TTSISFRDLIDKSINETLGRSVYTSMAAF 780
              LT++GYS+ D VVV+D +++  +         ++    D++++ TL RS+ TS+ A 
Sbjct: 195 LGFLTILGYSLYDAVVVFDMIKEVTRDLGAPGKLKTYTQAADEALSRTLVRSLNTSLVAI 254

Query: 781 ISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           + V  +      + G   +   ++ +  GIVV   SS+ +A P+L+ + +   +  ++
Sbjct: 255 LPVASILFVGTFLLGAGALKDLSLSLFVGIVVGTYSSLCVATPLLVQLKEREPRYRQL 312


>gi|301061801|ref|ZP_07202534.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [delta proteobacterium NaphS2]
 gi|300444091|gb|EFK08123.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [delta proteobacterium NaphS2]
          Length = 1050

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 71/657 (10%), Positives = 171/657 (26%), Gaps = 38/657 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +  +        + +FP   P                      
Sbjct: 9   RPIFAGVISIVISLAGAVCII-----LLPIAQFPEITPPTVK---------VQATYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +E  + ++              + IT++F      +  A  V   +  
Sbjct: 55  AEVVEKTVTTPIEEQINGVEGMTYMSSISSGDGTSNITVTFDVGYDLDIAAVDVQNRVTM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              ++  D +K  + T  +    +++     +      +  S       +D++       
Sbjct: 115 AQPQVPEDVRKYGITTQKQSPDFVLIICLYSENDAFDNLFLSNYAAINVVDRLKRLPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P +L  +  T   +       N        G           Y
Sbjct: 175 DVEIFGEKKYAMRLWLNPDKLTSMDMTAMDVINAVQEQNVQVAAGSIGEAPSPPGQVFTY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     ++              + +    I   +             +           
Sbjct: 235 SINTLGRLA-------------TSKEFEDIIVRTKEDGSVVRVRDVGRVELGAENYGWYA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +        L+          V          S   
Sbjct: 282 HLNGGKAACIGVFQLPGANALQVAKEVYANIEQLKKRFPDGLKYAVSYDTTLFVKESIIE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV +V+++ +   +  LV   +I ++++ T A+L   G ++   ++ G+V
Sbjct: 342 VIKTLLIAMLLVFLVVYIFLQNWRATLVPAIAIPVSLVGTFAVLEAFGFSINTLTLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E      + K  +   +           I  + +  +   V + F 
Sbjct: 402 LAIGIVVDDAIVVVENASRCIDEKGMAPKEATKEAMREVTGPIIATTLVLMSVFVPVAFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSRF 531
               G   R FA+T+  S+ IS   A+++  A+   ++R          +  +       
Sbjct: 462 PGITGQLYRQFALTIAFSVGISSINALTLSPALCAALLRKTPDRQGWFFRKFNQVFNWSR 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +           +  + L                  + +G   + +       L
Sbjct: 522 EKYLKGVRWFIKAWVLVFLVFAGLLFATYYMFKIVPTGFVPSEDQGYFMVMLQTPEGSSL 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                  + ++    S +  +              +  +      M++       P 
Sbjct: 582 DRTEKVCDQVEKILKSMKGIENVVMIGGYNLLNSANDTSSAAAFVMLEPWDKRTTPQ 638



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 65/545 (11%), Positives = 150/545 (27%), Gaps = 49/545 (8%)

Query: 308  INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                     +  +   +      L                +  N   +     +     A
Sbjct: 475  TIAFSVGISSINALTLSPALCAALLRKTPDRQGWFFRKFNQVFNWSREKYLKGVRWFIKA 534

Query: 368  IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL------------- 414
             V   ++    +   Y  + +V    +         ++       +L             
Sbjct: 535  WVLVFLVFAGLLFATYYMFKIVPTGFVPSEDQGYFMVMLQTPEGSSLDRTEKVCDQVEKI 594

Query: 415  ---------PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                       + G    +  A D++      + E   K  +   SL          + D
Sbjct: 595  LKSMKGIENVVMIGGYNLLNSANDTSSAAAFVMLEPWDKRTTPQLSLKGLMGTFMGEVAD 654

Query: 466  SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             N   +I        G     GF       +      ++  +RA+   +I   + + +  
Sbjct: 655  INEAVIIPFPPPPIQGLSTTGGFEF----ELQDLTGGSLVELRAVADKLIAAARKEPVLA 710

Query: 526  NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI---QLG 582
               + F +      I+  R +   + +SI     ++            +  G +    L 
Sbjct: 711  PLSTTFEVNYPQFYIELDRTKAKSLKVSISDVFNTLQTFLGSMYVNDFNKFGRVYRVFLQ 770

Query: 583  VLANRPVDLSVVRSN-----------LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
               +   +   +              L +L          + +   L R     G +   
Sbjct: 771  AEKDYRANREDISKLYVRAEDGSMVPLSALVKVKQIRGVQNVKHYNLFRTISLYGGNAPG 830

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RF 688
                + +           T +          +E+   G+   I S   +  ++++     
Sbjct: 831  YSTGQAIAAMEKLADENLTSEYAYEWTGTAYQEIKAGGMAPYIFSLALVFAFLFLAAQYE 890

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +  + L I   L    + GI  ++     ++ LIG +  + +++ +  R+  
Sbjct: 891  SWVMPMMVMLAVPLAILGALVAQHIRGIANDVYCQIGLVLLIGLASKNAILIVEFARE-- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S  D   K+  E L   + T+ A  + V+PM V    G +   S    +  G+
Sbjct: 949  -LRDRGESIVDAAVKASRERLRPILMTAFAFILGVVPMVVATGAGAASRHSLGTAVFGGM 1007

Query: 806  VVAAS 810
            + +  
Sbjct: 1008 LASTF 1012



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 85/237 (35%), Gaps = 10/237 (4%)

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            +          G+   +   Q    +++   + +    +++ +  P             
Sbjct: 274 AENYGWYAHLNGGKAACIGVFQLPGANALQVAKEVYANIEQLKKRFPDGLKYAVSYDTTL 333

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
             +E I + I  ++I+ + + + ++I  + W   L     + + +  T      FG   N
Sbjct: 334 FVKESIIEVIKTLLIAMLLVFLVVYIFLQNWRATLVPAIAIPVSLVGTFAVLEAFGFSIN 393

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFRDLIDKSINETLGRSVYTSM 777
              +  ++  IG  V         + +N         ++ ++   +++ E  G  + T++
Sbjct: 394 TLTLFGLVLAIGIVV----DDAIVVVENASRCIDEKGMAPKEATKEAMREVTGPIIATTL 449

Query: 778 AAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 +P+A      G +   FA+ +AF + +++ +++ ++  +   +        
Sbjct: 450 VLMSVFVPVAFMPGITGQLYRQFALTIAFSVGISSINALTLSPALCAALLRKTPDRQ 506


>gi|172058101|ref|YP_001814561.1| preprotein translocase subunit SecF [Exiguobacterium sibiricum
           255-15]
 gi|171990622|gb|ACB61544.1| protein-export membrane protein SecF [Exiguobacterium sibiricum
           255-15]
          Length = 305

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 147/304 (48%), Gaps = 10/304 (3%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            +     +++ R     I+I   + S+ LL   GLN GIDF  G ++ + +   +  S V
Sbjct: 3   FNPTKFDYVKHRNIYFIITIALVVISVLLLTLRGLNLGIDFTEGTRVEISSTNTIKESEV 62

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           RS +E   I           +   +      G+   Q     + K K           + 
Sbjct: 63  RSVIEDAGIDAAEINGVQFAQGGKLANVTFVGEFDQQQ----ISKMKQAIEAKYKKEPSI 118

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             V  ++ +E+ R  I  V+++++ ++IY+  RF+  + +  +  L+ D    + FF+LF
Sbjct: 119 STVSAQVGQEIARNAIYAVLLASLGIVIYVSFRFQPLYGIATVLALLHDALMIIAFFSLF 178

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI------SFRDLIDKSINET 768
            IE NL  +AA+LT+IGYSVND +V +DR+R+N+                 ++++SI +T
Sbjct: 179 QIEVNLYFIAAILTIIGYSVNDTIVTFDRVRENLAHAEKGGRQVTFSELSHIVNESIQQT 238

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + RS+ T +   ++   + ++G   I  F++ +  G+++   SSIFIAA + L +     
Sbjct: 239 IIRSINTVVTVIMTAAALYIFGSEAIRGFSLALLVGLIMGMYSSIFIAAQLWLVMKGRTL 298

Query: 829 KNAR 832
           K+++
Sbjct: 299 KSSK 302


>gi|167564941|ref|ZP_02357857.1| multidrug efflux pump BpeF [Burkholderia oklahomensis EO147]
 gi|167572147|ref|ZP_02365021.1| multidrug efflux pump BpeF [Burkholderia oklahomensis C6786]
          Length = 1061

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/548 (12%), Positives = 154/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLAGMIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAEAVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   T   +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRNLTADDVVRAIREQNVQVAAGVIGASPTLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQSED-------------EFGDIVVKTAPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLAISDEVRKTMAELKQDFPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL L G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLLFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLTARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  L    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGEKEDWLTRLMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGKTPFEAAVQASRLRLRPILMTSIAFIMGVVPLVLSTGAGAEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 91/258 (35%), Gaps = 13/258 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +            + + V+K
Sbjct: 252 IVVKTAPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLAISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 312 TMAELKQDFP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLIAVPVSIVGTFSLLLLFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIVVAASSS 812
           + R    K++ E  G  +  ++   A    L       G     FA+ +A   V++A +S
Sbjct: 428 TARAATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNS 487

Query: 813 IFIAAPI-LLFIYDWRAK 829
           + ++  +  + +     K
Sbjct: 488 LTLSPALSAILLKGHGEK 505


>gi|153001800|ref|YP_001367481.1| preprotein translocase subunit SecF [Shewanella baltica OS185]
 gi|217972305|ref|YP_002357056.1| preprotein translocase subunit SecF [Shewanella baltica OS223]
 gi|304410275|ref|ZP_07391894.1| protein-export membrane protein SecF [Shewanella baltica OS183]
 gi|307302014|ref|ZP_07581772.1| protein-export membrane protein SecF [Shewanella baltica BA175]
 gi|151366418|gb|ABS09418.1| protein-export membrane protein SecF [Shewanella baltica OS185]
 gi|217497440|gb|ACK45633.1| protein-export membrane protein SecF [Shewanella baltica OS223]
 gi|304351684|gb|EFM16083.1| protein-export membrane protein SecF [Shewanella baltica OS183]
 gi|306914052|gb|EFN44473.1| protein-export membrane protein SecF [Shewanella baltica BA175]
          Length = 300

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 153/288 (53%), Gaps = 3/288 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I   + R+    ISIL  I S+ ++   G N+G+DF GG+   V  +R +  S ++ 
Sbjct: 1   MKNINLTKWRYVSSAISILLMITSLAIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQP 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +    ++S  +      +++R  Y    S    +    +++ +  +     + N+ +
Sbjct: 61  LLNAAYQQEVSVISASEPGRWVLR--YGDIKSADTEQSNVDIQQALAPLNSEVQVLNSSV 118

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP+I +EL  +G + ++++ + +L Y+  RF+W  A GA+  L+ D+   L FFAL  +
Sbjct: 119 VGPQIGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVVFVLAFFALTQM 178

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT +AAVL ++GYS+ND +++ DR+R+ +      ++ +++ +++I  T  R++ TS
Sbjct: 179 EFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPK-LAIQEINNQAIVATFSRTMVTS 237

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               ++V  + + GG  +  F+I M  GI+    SSI +   +   + 
Sbjct: 238 GTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLG 285


>gi|153002748|ref|YP_001368429.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           baltica OS185]
 gi|151367366|gb|ABS10366.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS185]
          Length = 1044

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 70/691 (10%), Positives = 179/691 (25%), Gaps = 49/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P+  P   +                  
Sbjct: 8   RPIFAWVIALIIMLAGILSI-----RSLPVSQYPNIAPPTVV---------ISANYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        ITL+F      +    +V   LQG
Sbjct: 54  AKIVEDSVTQVIEQRMTGIDHLRYISSTSDSFGNASITLTFNAEADPDIAQVQVQNKLQG 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +   +         +++             + +  +     D +       
Sbjct: 114 AMTLLPQEVQSQGVNVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANIQDPMSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L Q   T+  +       N        G            
Sbjct: 174 EIQLFGAQ-YAMRIWLDPLKLTQYNLTSLDVIAAIRSQNAQVSAGQLGGAPSVAGQELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   ++     F      +           
Sbjct: 233 TVSAQSRL-------------QTAEEFRKIILKSDISGANVFLGDVARVELGSESYAVVS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +   T        A ++         +           S   
Sbjct: 280 LYNGQPATGLAIKLATGANALDTASAVREKIAEMKPFFPQGLEVVYPYDTTPFVEQSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T A+LS+ G ++   ++  +V
Sbjct: 340 VVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSMAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G      R F+IT+  ++ +S+  A+ +  A+   +          I        +   
Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVLVALILTPALCATMLKPVKKGHGHIETGFFGWFNRTF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A    R+        +L        +         + +G +    +   
Sbjct: 520 DKLTNRYESSVAGIIKRSFRVMTIYVVLVIAVGWIFIRMPTAFLPDEDQGILFTQAILPT 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     LE +        +F  E+               Q + + +    + +   
Sbjct: 580 NSTQESTLKVLEKVSD------HFMAEEGVRSVFSVAGFSFAGQGQNMGIAFVGLKDWSE 633

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                         +  +  +    ++ + +
Sbjct: 634 REAPGMDVKSIAGRAMGVFGQMKDALVFAFV 664



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 81/246 (32%), Gaps = 6/246 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +   +           L        +++     +     ++    P
Sbjct: 259 NVFLGDVARVELGSESYAVVSLYNGQPATGLAIKLATGANALDTASAVREKIAEMKPFFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                           + I   +  ++ + + + + +++  + +   L     + + +  
Sbjct: 319 QGLEVVYPYDTTPFVEQSIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T    ++ G   N   + A++  IG  V+D +VV + +     +    +S  +   KS++
Sbjct: 379 TFAILSMAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPLEATRKSMD 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  V   +      +PMA   GS       F+I +   + ++   ++ +   +   +
Sbjct: 437 QITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCATM 496

Query: 824 YDWRAK 829
                K
Sbjct: 497 LKPVKK 502



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 73/261 (27%), Gaps = 11/261 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +       V  S   +         +   N     N           
Sbjct: 774  QYRMQPGDLDTWYVRNNKGDMVPFSAFATGTWEYGSPRLERFNGLPSMNIQGATAPGFST 833

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++ K+            + E              +  + I  +  L+   + 
Sbjct: 834  GAAMEIMEDLAKQLPPGFGVEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 888

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 889  ESWSVPFAVVLVVPLGIIGALVAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 948

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 949  ---YEKGSGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++ +    IF      + +  
Sbjct: 1006 MMSSTFLGIFFVPLFFVIVER 1026


>gi|261345773|ref|ZP_05973417.1| multidrug resistance protein MdtF [Providencia rustigianii DSM
           4541]
 gi|282566261|gb|EFB71796.1| multidrug resistance protein MdtF [Providencia rustigianii DSM
           4541]
          Length = 1052

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 72/694 (10%), Positives = 181/694 (26%), Gaps = 55/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIITMLAGLLAII-----KLPVAQYPTIAPPA-------------VSISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADASTVQNTVTQVIEQNMNGIDNLVYMSSTSDSSGSASITLTFEAGTDGDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++            + +  +     D +   
Sbjct: 110 KLQLAMPLLPQEVQQQGISVDKSSSSFLMVAGFISKDGSMGQYDIADYVGSNIKDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P +L +    T+ +     + NN       G        
Sbjct: 170 NGVGETQLFGTQ-YAMRIWLKPEQLVKYNMATSDVINAIRVQNNQVAAGQLGGTPPVGGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +S +              +    +        +        +       
Sbjct: 229 RLNVSIIAQTRLSNVE-------------EFSNILLRVNQDGSQVRLKDVATVQLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A +          +           
Sbjct: 276 STIARFNGMPAAGIGIKLATGANALDTANNVRAALADMEPFFPDGLEVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV++V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIMLVVVVMYLFLQNIRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+L+S+  A+ +  A+   I                   
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMLLSVLVAMILTPALCATILKPIEKGSHGSTKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +     +     D ++        + V   +L +  +   +         + +G     V
Sbjct: 516 NRTFEKQAHHYTDSVSRMLNGTGRYLVIYLLLVAGMAFMFVKLPSSFLPAEDQGVFLSMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L+ +          D  KN                + + +    + 
Sbjct: 576 QLPPGSTQEQTQVILDEVSDYFRK----DEGKNVESVFTVGGFSFAGAGQNMGLAFVVLK 631

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                   +N        +   + K     I + 
Sbjct: 632 NWDERKGDENHVDAIVARANAALSKKQGAFIYAF 665



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      +        +        +++     +      +    
Sbjct: 258 SQVRLKDVATVQLGAENYSTIARFNGMPAAGIGIKLATGANALDTANNVRAALADMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + +++ +++  +     L     + + + 
Sbjct: 318 PDGLEVVYPYDTTPFVKISINEVVKTLVEAIMLVVVVMYLFLQNIRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   + A++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   ++++   ++ +   +
Sbjct: 436 EQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSSMLLSVLVAMILTPAL 492



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 9/243 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L+  +             N +  +  Q   +  Q+    M+  +      L      E
Sbjct: 802  AFLDESKDPWKFGSPRLERYNGVPAMNIQGQATEGQSTGAAMLMMEKLTTENLPEGIGYE 861

Query: 656  IVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
              G      L       +  IS I + + +   ++ W      +  + L +   L F ++
Sbjct: 862  WTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSVPFSVMLVVPLGVIGALLFTSV 921

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G++ ++     +LT IG S  + +++ +  +  M+         +    ++   L   +
Sbjct: 922  RGLDNDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LIEATLDAVKMRLRPIL 979

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS+A  + V+P+      G +   S    +  G+  A   S+ I    + F+   R  +
Sbjct: 980  MTSLAFMLGVIPLVFSNGAGSAAQNSVGTGVLGGMFAAT--SLAIFFVPVFFVVIRRRFD 1037

Query: 831  ARI 833
             +I
Sbjct: 1038 KKI 1040


>gi|115359444|ref|YP_776582.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           ambifaria AMMD]
 gi|115284732|gb|ABI90248.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria AMMD]
          Length = 1071

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 152/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVIILLGGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q       +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLAAEDVVRSIREQNVQVAAGVIGASPSLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQTED-------------EFGDIVVKTTPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRKTMAELKQDMPAGIDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  L+   ++ +++I T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLGFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFK 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 RFNKVFHR 530



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+      G  +  +  I + FG+
Sbjct: 960  -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 90/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 252 IVVKTTPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  +L 
Sbjct: 312 TMAELKQDMP-AGIDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+    + +
Sbjct: 371 PLIAVPVSIIGTFSLLLGFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ESGM 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           + R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 428 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 486

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 487 SLTLSPALSAILLK 500


>gi|15599015|ref|NP_252509.1| preprotein translocase subunit SecF [Pseudomonas aeruginosa PAO1]
 gi|107103340|ref|ZP_01367258.1| hypothetical protein PaerPA_01004409 [Pseudomonas aeruginosa PACS2]
 gi|218889896|ref|YP_002438760.1| preprotein translocase subunit SecF [Pseudomonas aeruginosa LESB58]
 gi|254236724|ref|ZP_04930047.1| secretion protein SecF [Pseudomonas aeruginosa C3719]
 gi|254242511|ref|ZP_04935833.1| secretion protein SecF [Pseudomonas aeruginosa 2192]
 gi|81540196|sp|Q9HXI2|SECF_PSEAE RecName: Full=Protein-export membrane protein secF
 gi|9949994|gb|AAG07207.1|AE004799_13 secretion protein SecF [Pseudomonas aeruginosa PAO1]
 gi|126168655|gb|EAZ54166.1| secretion protein SecF [Pseudomonas aeruginosa C3719]
 gi|126195889|gb|EAZ59952.1| secretion protein SecF [Pseudomonas aeruginosa 2192]
 gi|218770119|emb|CAW25881.1| secretion protein SecF [Pseudomonas aeruginosa LESB58]
          Length = 306

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 82/285 (28%), Positives = 160/285 (56%), Gaps = 5/285 (1%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I FM  R     ++++ ++ ++   FT G+N+G+DF GG  + +   +P DL  VR  L
Sbjct: 7   TINFMGIRNVAFAVTLILTVIALGSWFTKGINFGLDFTGGTLIELTYEQPADLGKVRGQL 66

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                 D   Q+F   ++ LVR+  +  +   +            +    + ++  E VG
Sbjct: 67  VGAGYEDAVVQSFGDARDVLVRMPSEDPELGKKVATALQQ----ADAGNPANLKRVEYVG 122

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P++  EL  +G +G++++   +L+Y+  RF+W FALGAI +L+ D    +G  + F + F
Sbjct: 123 PQVGEELRDQGGLGMLLALGGILLYVGFRFQWKFALGAILSLVHDAIIVMGVLSFFQVTF 182

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           +LT +AAVL ++GYS+ND +V++DR+R+N ++        + ++ S ++TL R++ TS++
Sbjct: 183 DLTVLAAVLAVVGYSLNDTIVIFDRVRENFRVLRK-ADLVENLNISTSQTLLRTIATSVS 241

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +++  +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 242 TLLAIAALLFFGGDNLFGFSIALFVGVMAGTYSSIYIANVVLIWL 286



 Score = 44.3 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 4/139 (2%)

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
                K+ L A  S+  + I+ + +LS    T  L  +A ++  +G +++  I++ +R+R
Sbjct: 150 FRFQWKFALGAILSLVHDAIIVMGVLSFFQVTFDLTVLAAVLAVVGYSLNDTIVIFDRVR 209

Query: 440 EENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           E  R  +      ++  S +     TI  S  T L    +LFF GG  + GF+I + + +
Sbjct: 210 ENFRVLRKADLVENLNISTSQTLLRTIATSVSTLLAIAALLFF-GGDNLFGFSIALFVGV 268

Query: 497 LISMFTAISIVRAMMIFII 515
           +   +++I I   ++I++ 
Sbjct: 269 MAGTYSSIYIANVVLIWLN 287


>gi|239907478|ref|YP_002954219.1| efflux system protein [Desulfovibrio magneticus RS-1]
 gi|239797344|dbj|BAH76333.1| efflux system protein [Desulfovibrio magneticus RS-1]
          Length = 1049

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 80/627 (12%), Positives = 178/627 (28%), Gaps = 33/627 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   GL            + ++P  +P                V     
Sbjct: 9   RPVFSIVISLVIVLAGLAAI-----RSLPIAQYPDIVPPEV---------NVTAVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + +        +        IT++FA     +     V   +Q 
Sbjct: 55  PEVIAATVAAPLEQQINGVDNMLYMRSTSSGDGTLSITVTFAVGTNPDQNTINVNNRVQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + ++  +  T +    + +   +       A+  S  ++   +D++       
Sbjct: 115 AQTTLPEEVRRQGVTVTKKSSNILQIIGFDSPSGRYDAVFISNYVLVNILDELKRLPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L QL  T   ++      N        G    +    +  
Sbjct: 175 DASIFGAKDYSMRVWLRPDKLAQLKLTPTDVANAISEQNAQFAAGRIGAEPTKPE--SPV 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +   V   G  +            +    I   +             +           
Sbjct: 233 ALNYMVTTKGRLIT---------PEEFGDIILRAQPDGSLLRLKDVARVELGAKDYSSIS 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +   T E        L A      +  V          S   
Sbjct: 284 KRNGSPTVNAAIFLAPGANALDTAERVTAKLKELSARFPDGIIYSVPLDTTTFVRVSIEE 343

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  L+   ++ +++I T A +  LG T+   ++ G+V
Sbjct: 344 VIHTLVEAMILVFIVVFVFLQNFRATLIPCLAVPVSIIGTFAGMQALGFTINTLTLFGMV 403

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     K +     +           +    +      V + F 
Sbjct: 404 LAIGIVVDDAIVVLENVERIMTKEKLPPREATAKAMEEVTGPVVAIVLVLCAVFVPVAFL 463

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM---KSIDINPLSRFFLI 534
           G   G   + FAIT+ +S++IS   A+++  A+   +++       +           + 
Sbjct: 464 GGLTGQMYKQFAITIAVSVVISGLVALTLTPALCATLLKPGHQEPNRFFRGFNRLFDAVT 523

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               A      R     + +   +C         +  G+         +  N   D + +
Sbjct: 524 AGYGAGVAFLLRRSAFAMLLFAGLCLGTGWLFKQVPGGLVPDEDQGYVIAVNILPDGTSL 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRL 621
           R+  +     D         K+ +   
Sbjct: 584 RATEQISDAMDAMNMQDPSVKDVIAIT 610



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 82/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +      +                 +++     +    K+++   P   I 
Sbjct: 268 DVARVELGAKDYSSISKRNGSPTVNAAIFLAPGANALDTAERVTAKLKELSARFPDGIIY 327

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +  +      R  I + I  ++ + I + I +++  + +   L     + + I  T    
Sbjct: 328 SVPLDTTTFVRVSIEEVIHTLVEAMILVFIVVFVFLQNFRATLIPCLAVPVSIIGTFAGM 387

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N   +  ++  IG  V+D +VV + +     +    +  R+   K++ E  G 
Sbjct: 388 QALGFTINTLTLFGMVLAIGIVVDDAIVVLENV--ERIMTKEKLPPREATAKAMEEVTGP 445

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V   +      +P+A  G   G +   FAI +A  +V++   ++ +   +   +  
Sbjct: 446 VVAIVLVLCAVFVPVAFLGGLTGQMYKQFAITIAVSVVISGLVALTLTPALCATLLK 502



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/156 (10%), Positives = 57/156 (36%), Gaps = 9/156 (5%)

Query: 668  KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            +G   ++ +   +++ + +     +W      +  +   +   +       +  ++    
Sbjct: 869  QGSSALVFAMGIVMVILILAAQYERWTLPFAVVMAVPFALFGAIAAVYGRDLSNDIYFQI 928

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            A++TLIG +  + +++ +     +       +  +    +        + TS+A  +  L
Sbjct: 929  ALVTLIGLAAKNAILIVEFA---VLEVKAGKTLAEAALSAAKLRFRPIIMTSLAFILGCL 985

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            P+A+    G +   +    +  G++ A   + F   
Sbjct: 986  PLAISTGAGANSRHAIGTGVIGGMLGATIIAPFFIP 1021


>gi|213157392|ref|YP_002319437.1| multidrug efflux protein AdeB [Acinetobacter baumannii AB0057]
 gi|215483398|ref|YP_002325611.1| AcrB protein [Acinetobacter baumannii AB307-0294]
 gi|213056552|gb|ACJ41454.1| multidrug efflux protein AdeB [Acinetobacter baumannii AB0057]
 gi|213986381|gb|ACJ56680.1| AcrB protein [Acinetobacter baumannii AB307-0294]
          Length = 1035

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 83/690 (12%), Positives = 179/690 (25%), Gaps = 54/690 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 7   RRPVFAWVIAIFIIIFGLLSI-----PKLPIARFPSVAPP-------------QVNISAT 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +IT +F      E     V 
Sbjct: 49  YPGATAKTINDSVVTLIERELSGVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 109 NKIKAVEARLPQVVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 169 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S +              +        +            N+      
Sbjct: 228 QLITIPLSAQGQLSSLE-------------QFKNISLKSKTNGSVIKLSDVANVEIGSQA 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 275 YNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPEGMEFSIPYDTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 335 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +         S I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERIMATEGLSPKDATSKAMKEITSPIIGITLVLAAVFL 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSID 524
            + F  G      + F +TM +SIL S   A+ +  A+   I         +       D
Sbjct: 455 PMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 514

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           +           V   ++  I    + +        + +G       
Sbjct: 515 RSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFAGMKYWPTAFMPEEDQGWFMTSFQ 574

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                     R+ +   +       +       L       G S A   V          
Sbjct: 575 LPSDATAERTRNVVNQFENNLKDNPDVKSNTAIL-----GWGFSGAGQNVAVAFTTLKDF 629

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               S+                    + V+
Sbjct: 630 KERTSSASKMTSDVNSSMANSTEGETMAVL 659



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V     +    +++   +P 
Sbjct: 260 IKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 320 GMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  +S +D   K
Sbjct: 377 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLSPKDATSK 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPMA   GSV      F + M+  I+ +A  ++ +   +
Sbjct: 434 AMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPAL 492



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 785  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 844

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 845  GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 896

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 897  PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 953

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 954  TVAAAKLRLRPILMTSLAFTCGVIPLVIATGAS-SETQHALGTGVFGGMISATILA 1008


>gi|121725923|ref|ZP_01679223.1| protein-export membrane protein SecD [Vibrio cholerae V52]
 gi|121631688|gb|EAX64056.1| protein-export membrane protein SecD [Vibrio cholerae V52]
          Length = 612

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 151/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRT 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   S++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVSVQAMGND---AFEVRTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMTLWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMTLWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|85704474|ref|ZP_01035576.1| Cation/multidrug efflux pump, RND family protein [Roseovarius sp.
           217]
 gi|85670882|gb|EAQ25741.1| Cation/multidrug efflux pump, RND family protein [Roseovarius sp.
           217]
          Length = 1034

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 76/684 (11%), Positives = 182/684 (26%), Gaps = 40/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  IG+L  +        + ++P   P +                    
Sbjct: 8   RPVFAWVISILIMGIGILAIM-----ILPVAQYPQIAPPSVT---------VSATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    ++  + L              + ++TL+F      +    +V   L  
Sbjct: 54  ADTVANTVTQVIEQQMTGLDGLRYFSSRSTSAGSAEVTLTFETGTDADIAQVQVQNKLGQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +         +++            ++ S  ++   +D++   E   
Sbjct: 114 ATPLLPEIVQRQGITVEKSSAGFLMVVGMISTDGSLEQVDLSDYMVTNLVDELSRIEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DPS+L     T + +       N       FG R   +      
Sbjct: 174 SVNVFGAQ-YAMRIWLDPSKLAGFGLTPSDVVASVSAQNAQISAGSFGARPAVEGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +S                     +   E             +           
Sbjct: 233 TITAQSLLS-------------TPEDFRQIVLRAETDGGLVLLDDVATVEIGAENYATTA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T                     ++          S   
Sbjct: 280 RFNTDPAAGMAITLAPGANALDTARAIKERMVEFSRFFPEGVDYVIPYDTTPFVEISIKE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T     GLV +V+F+ +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VVKTLFEAIGLVFLVMFLFLQNLRATLIPTLAVPVVLLGTFGVLAAAGFSINTLTMLAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEEEGLGPREATHKSMGQITGALVGIAMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530
            G      + FAIT+  ++ +S+  AI++  A+   +        +       +      
Sbjct: 460 PGSTGVIYQQFAITIVSAMALSVVVAITLTPALCASLLKAKSHAPKRGPFAWFNTGFGKL 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  +     R     V    L    ++  L T       + +G +   +       
Sbjct: 520 TNGYGGTVGWSVRRPVRVFVVYLALALGMALMFLRTPTGFLPEEDQGILFTLIQTPTGSS 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  ++ ++   +  +       F V      G+          +K       P  +
Sbjct: 580 AERTLEVVKQVEDYYLKQETDVVNSMFGVVGFSFSGNGQNMGLAFVQLKDWEERTEPNQS 639

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
           +Q           ++    +  V+
Sbjct: 640 VQALAGRAFGAFSQIRDAMVFPVV 663



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 74/200 (37%), Gaps = 14/200 (7%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    +    +   E V      +T        +E+++     + +  + M +++ 
Sbjct: 301 DTARAIKERMVEFSRFFPEGVDYVIPYDTTPFVEISIKEVVKTLFEAIGLVFLVMFLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YD 742
                   L     + + +  T G  A  G   N   + A++  IG  V+D +VV    +
Sbjct: 361 ---NLRATLIPTLAVPVVLLGTFGVLAAAGFSINTLTMLAMVLAIGLLVDDAIVVVENVE 417

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAI 799
           R+ +        +  R+   KS+ +  G  V  +M      +PMA + GS       FAI
Sbjct: 418 RIMEE-----EGLGPREATHKSMGQITGALVGIAMVLSAVFVPMAFFPGSTGVIYQQFAI 472

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +   + ++   +I +   +
Sbjct: 473 TIVSAMALSVVVAITLTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             +  +   +S  A+ + +   ++ W      +  + + I   L    + G E  +     
Sbjct: 866  NQAPLLYALSLAAVFLSLAALYESWSIPFAVMLAMPIGIVGALTGAWIGGFENGVFFQVG 925

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +LT++G +  + +++ +  R+    Y    +  + + ++  +     + TSMA  + VLP
Sbjct: 926  LLTVVGLTGKNAILIVEFARE---RYEAGETILEAVIEAARQRFRPIIMTSMAFSLGVLP 982

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + +    G     +    +  G +      +       + +  
Sbjct: 983  LVLSSGAGSGGRNAIGSGVLSGTISGTVLGVVFVPLFFVIVTR 1025


>gi|330809156|ref|YP_004353618.1| Acriflavine resistance protein B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327377264|gb|AEA68614.1| Acriflavine resistance protein B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 1031

 Score =  191 bits (484), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 85/683 (12%), Positives = 189/683 (27%), Gaps = 39/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L       PQ  + ++P   P          +   + V     
Sbjct: 8   RPVFAWVVALFILLAGILAI-----PQLPVAQYPVVAPP---------QIEIYTVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V+  +    +E  +                  IT +F      E     V   L+ V
Sbjct: 54  AQTVDESVVSLIEEELNGTDNLLYFESQSSLGSATITATFQPGTNPELAQVDVQNRLKAV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L     +  L         ++L            +  S  + R  +++I   +   +
Sbjct: 114 ESRLPQAVTQQGLQVDKVSAGFLLLITLTSSDGKLDDVALSDYLARNVMNEIKRLDGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T A ++   V  N        G    R +      
Sbjct: 174 AQLYGA-ERAMRIWIDPQKLVGFNLTPADVNAAIVAQNAQVSAGSLGDLPSRSTQEITAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  K ++                 +    +                 +            
Sbjct: 233 IVVKGQL-------------NTPQEFADIVLKANPDGSTVRIADVARVEIGSQEYQFSTR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L                +   T          L           +          S +  
Sbjct: 280 LNGKPSTAVAVQLSPGANALNTATLVRNKMDELSRYFPAGVEYKIPYDTSPFVKVSITKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+F+ +   ++ L+    + + ++ T A +  LG ++ + ++ G+VL
Sbjct: 340 IYTLGEAMLLVFAVMFLFLQNIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +     ++  S   +      +    I    +  +   + + F  
Sbjct: 400 AIGILVDDAIVVVENVERIMAQEGLSPKEATRKAMGQITGAIIGITLVLVAVFIPMAFMQ 459

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFFLIPD 536
           G      + F+++M  SIL S F A+++  A+   +++                F    D
Sbjct: 460 GSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPVAKGDHHAKSGFFGMFNRGFD 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL----- 591
               ++       V  S  + +    LL   GL +       + +        D+     
Sbjct: 520 RFGERYQGWVAHAVKRSGRYLLIYGVLLVGMGLLFSRLPSSFLPVEDQGYTITDIQLPPG 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +     ++ ++  +       G  +  + L +    S     +     K  ++     + 
Sbjct: 580 ASKSRTVQVVEQIEAHNAGEPGVGDSTIILGFSFSGSGQNAALAFTTLKDWSQRGADDSA 639

Query: 652 QNTEIVGPKISRELIRKGIVGVI 674
            +          ++       V+
Sbjct: 640 ASIADRANLALSQIKDAMAFSVL 662



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V ++ V       Q    S +        +        +++    ++     +++   P 
Sbjct: 259 VRIADVARVEIGSQEYQFSTRLNGKPSTAVAVQLSPGANALNTATLVRNKMDELSRYFPA 318

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I K I  +  + + +   +++  +   + L     + + +  T
Sbjct: 319 GVEYKIPYDTSPFVKVSITKVIYTLGEAMLLVFAVMFLFLQNIRYTLIPTLVVPVALMGT 378

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  V+D +VV + +     +    +S ++   K++ +
Sbjct: 379 FATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMAQEGLSPKEATRKAMGQ 436

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA   GSV      F++ MA  I+ +A  ++ +   +   + 
Sbjct: 437 ITGAIIGITLVLVAVFIPMAFMQGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLL 496

Query: 825 D 825
            
Sbjct: 497 K 497



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/413 (10%), Positives = 124/413 (30%), Gaps = 24/413 (5%)

Query: 416  SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIAT 474
            S   +      +  +  L    +++ +++      + +    + A S I D+   +++  
Sbjct: 605  STIILGFSFSGSGQNAALAFTTLKDWSQRGADDSAASIADRANLALSQIKDAMAFSVLPP 664

Query: 475  VVL-------FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-----FIIRYKKMKS 522
             V        F F      G      +     +  A      +M           +    
Sbjct: 665  PVDGLGTSSGFEFRLQDRGGLGHATLMQARSELLAAADKSPMLMNVRESALAEAPQVQLE 724

Query: 523  IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +D    +   +    +      A                 ++     +     +  +++ 
Sbjct: 725  VDRKQANALGISFADVGSVLSTAVGSTYINDFPNQGRMQRVVVQAEGDQRSQVEDLLKIH 784

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N    + +          G      ++G     +  +  PG S  Q          +
Sbjct: 785  VRNNSGKMVPLSAFVQARWTQGPAQLTRYNGYPAVSISGEPAPGYSTGQAMAEIERLVAL 844

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                         +           +  + + +S + + + +   ++ W      +  + 
Sbjct: 845  GPTGLGQEWTGLSLQERLSGS----QAPILLGLSLLVVFLCLAALYESWSIPTSVLLVVP 900

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L +   +   +L G+  ++     ++T+IG S  + +++ +  +    LY       D  
Sbjct: 901  LGVLGAVLAVSLRGMPNDVFFKIGLITIIGLSAKNAILIIEFAK---SLYDEGHDLIDAT 957

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASS 811
             ++    L   + TS+A  + V+P+A+  G+   S       +  G++ A  +
Sbjct: 958  LQAARLRLRPIIMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLA 1010


>gi|293449589|ref|ZP_06664010.1| RND efflux system [Escherichia coli B088]
 gi|291322679|gb|EFE62108.1| RND efflux system [Escherichia coli B088]
          Length = 532

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 152/552 (27%), Gaps = 46/552 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +     +K +         
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-----LKPVSAEHHENKG 509

Query: 533 LIPDCIAIQFMR 544
                    F  
Sbjct: 510 GFFGWFNTTFDH 521



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|71153370|sp|O52248|TTGB_PSEPU RecName: Full=Toluene efflux pump membrane transporter TtgB
 gi|3319233|gb|AAC38671.1| TtgB [Pseudomonas putida]
          Length = 1050

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 61/548 (11%), Positives = 150/548 (27%), Gaps = 33/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIAVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L +   T   +       N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPALPGTQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFESILLKVNKDGSQVRLGDVAQVGLGGENYAVSA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L     P    +           S S 
Sbjct: 280 QFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++ +S+  A+    A+   +++  K           F      
Sbjct: 460 GGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRN 519

Query: 538 IAIQFMRA 545
                   
Sbjct: 520 FDRSVNGY 527



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 89/247 (36%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   +S Q      + L        +++   + L    K +    
Sbjct: 258 SQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   I  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +   
Sbjct: 436 EQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPLKK 502



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 71/185 (38%), Gaps = 10/185 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            E + +       L +       G     +L    +  +  +   + +++    +   W  
Sbjct: 837  EAMAEVERIAGELPSGIGFSWTGMSYEEKLSGSQMPAL-FALSVLFVFLCLAALYESWSI 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  + L I   L   +L G+  ++  +  +LT IG +  + +++ +  ++   L+ 
Sbjct: 896  PIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKE---LHE 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  D   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A 
Sbjct: 953  QGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISAT 1012

Query: 810  SSSIF 814
              +IF
Sbjct: 1013 VLAIF 1017


>gi|254513992|ref|ZP_05126053.1| protein-export membrane protein SecF [gamma proteobacterium NOR5-3]
 gi|219676235|gb|EED32600.1| protein-export membrane protein SecF [gamma proteobacterium NOR5-3]
          Length = 304

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 93/292 (31%), Positives = 165/292 (56%), Gaps = 5/292 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R      S L  + ++  L    LN+G+DF GG  + V      DL+ +RS
Sbjct: 1   MKTINFMGKRRVAAVFSALLIVTALGSLVFKQLNWGLDFTGGTLVEVHYQESADLNEIRS 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L           +F  +++ L+RL     D  +  +  EM++           ++  E 
Sbjct: 61  TLADSGYAGAIVVSFGTDRDVLIRLP----DGYSDAQGTEMLQTLQASSGVGVELRRIEF 116

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +G + ++++   +++YI  RF++ FA+GA+  LI D+  TLGFF++ G+
Sbjct: 117 VGPQVGDELREQGGLAMLLALGLVMLYIAFRFQFKFAVGAVVALIHDVIVTLGFFSISGL 176

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EF+LT +AA+L +IGYS+ND +VV DR+R+N +         ++++ S++ETLGR++ TS
Sbjct: 177 EFDLTVLAALLAVIGYSLNDTIVVSDRIRENFRKL-RRADPLEIVNISLSETLGRTLVTS 235

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   + +L +A++GG +I  FA+ +  G+V+   SSI++A+ +LL +   + 
Sbjct: 236 LTTLLVLLALALYGGEMIFGFAVALLVGVVIGTYSSIYVASNVLLSMGVSKE 287


>gi|153951508|ref|YP_001397794.1| preprotein translocase subunit SecD [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152938954|gb|ABS43695.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 526

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 289/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++  +   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKINYRLIIFIAVFIFGVTFSLPSFLQSECGA---------KINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 52  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIAKVENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + + +      I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------KGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTVAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEVAS 218

Query: 232 ------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++ PV++ + +  G+++F + 
Sbjct: 219 YGLILVPDSRNSNLKYTLKSVPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGVAGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 459 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRR 526



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ ++I++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGV-AGIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRASIEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      K+ 
Sbjct: 458 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSN 515


>gi|237729578|ref|ZP_04560059.1| multidrug transporter [Citrobacter sp. 30_2]
 gi|226908184|gb|EEH94102.1| multidrug transporter [Citrobacter sp. 30_2]
          Length = 1038

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 78/678 (11%), Positives = 171/678 (25%), Gaps = 48/678 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMFTGGIAIM-----NLPVAQYPQIAPPT-------------ITISAAY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          I L+F      +    +V  
Sbjct: 50  PGADAKTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASIILTFKTGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    D       + +  +     D +  +
Sbjct: 110 KLQLAMPSLPQEVQQQGISVDKSSSNILMVAGFISDNNSLSQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +   T   +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGSQ-YAMRIWLDPQKLDKYNLTPEDVITQLKVQNNQISGGQLGGMPQSADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +               T +        +    +        I       
Sbjct: 229 QLNASIIVQTRL-------------QTTDEFGKIFLKVQQDGSQVLLRDVARIELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T +        L A        +           
Sbjct: 276 ATVARYNGKPAAGIAIKLAAGANALATSQAVKQELNRLSAWFPASMKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L + G ++   ++
Sbjct: 336 SIQGVFHTLIEAIILVFLVMYLFLQSFRATLIPTIAVPVVILGTFAILDVAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM----GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +      +          RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERIIAEEHLSPKAATHKAMGQLQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              +    G   R F+IT+  S+L+S+F A+S+  A+   +++                 
Sbjct: 456 MAFMSGATGEIFRQFSITLISSMLLSVFVAMSLTPALCAMLLK-------SHEGEKENTH 508

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   FM         S    +          L  G            +  P +   
Sbjct: 509 FLFTRFNHFMEKCTQHYTDSTRRLLRRTGRYMVVYLVIGAGMIVLFLRTPTSFLPEEDQG 568

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V      L  G                   +   +VA    +                 +
Sbjct: 569 VFMTTAQLPSGSTMVNTSKVLGEITDYYLTKEQKNVASVFTVGGFGFSGQGQNNGLAFIS 628

Query: 654 TEIVGPKISRELIRKGIV 671
            +    ++  E     I+
Sbjct: 629 LKPWSERVGEENSVTAII 646



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 82/244 (33%), Gaps = 8/244 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++A ++ ++    +++   
Sbjct: 258 SQVLLRDVARIELGAENYATVARYNGKPAAGIAIKLAAGANALATSQAVKQELNRLSAWF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P S                I+     +I + I + + +++    +   L     + + I 
Sbjct: 318 PASMKTVYPYDTTPFIEISIQGVFHTLIEAIILVFLVMYLFLQSFRATLIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     + G   N   +  ++  IG  V+D +VV + +     +    +S +    K++
Sbjct: 378 GTFAILDVAGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERIIAEEHLSPKAATHKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            + L R++        +V     +     G +   F+I +   ++++   ++ +   +  
Sbjct: 436 GQ-LQRALVGIAVVLSAVFMPMAFMSGATGEIFRQFSITLISSMLLSVFVAMSLTPALCA 494

Query: 822 FIYD 825
            +  
Sbjct: 495 MLLK 498



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 67/170 (39%), Gaps = 6/170 (3%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              +  +   IS I + + +   ++ W      +  + + +   L    L G+  ++    
Sbjct: 868  TNQAPMLYGISLIVVFLALAALYESWSIPFSVMLVVPIGVVGALLATDLRGLSNDVYFQV 927

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LT +G S  + +++ +   + M+      +  +   ++    L   + TS+A  + V+
Sbjct: 928  GLLTTMGLSAKNAILIVEFAVEIMQKE--GKTPLEAAVEAAQMRLRPILMTSLAFILGVI 985

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+A+    G     +    +  G++ A   +I+      + + +  A+  
Sbjct: 986  PLAISNGAGSGAQNAVGTGVIGGMLAATVLAIYFVPVFFVLVENTLARFK 1035


>gi|110799216|ref|YP_696620.1| preprotein translocase subunit SecF [Clostridium perfringens ATCC
           13124]
 gi|110673863|gb|ABG82850.1| protein-export membrane protein SecF [Clostridium perfringens ATCC
           13124]
          Length = 289

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 146/287 (50%), Gaps = 8/287 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            +     ISIL  +     +FT G+N+GIDF+GG Q+ +      + + V   ++     
Sbjct: 7   KKKIWFTISILIIVIGFGFMFTKGMNFGIDFRGGTQVVINMGTDFNKTDVDKIVDEYSKD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ Q    E     +       +     + E    K   +       +   +G  + R+
Sbjct: 67  AVTNQVNGTEIQIKAKELNSSQVNDIFKALKEKYDLKDDAL------VSQNEIGASVGRD 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L    IV ++I+ I MLIY+ IRF++ F + AI  L+ D+  T+  +A+FGI  N   +A
Sbjct: 121 LTTNAIVALVIAVIGMLIYVVIRFEFSFGIAAIIALLHDVLITISVYAVFGITINTPFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +V++DR+R+N +      S  ++ D SI +T+ RS+ T++   I+++
Sbjct: 181 AILTIVGYSINDTIVIFDRIREN-RKKLRGKSVEEIADMSITQTMSRSINTTLTTLITIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + ++    +  FA P+  GI   A SSIFIA+PI   + + +    
Sbjct: 240 CVYIF-VPTVRDFAFPLIVGIASGACSSIFIASPIWCILANRQKNKK 285


>gi|160877486|ref|YP_001556802.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           baltica OS195]
 gi|160863008|gb|ABX51542.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS195]
 gi|315269690|gb|ADT96543.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS678]
          Length = 1044

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/691 (10%), Positives = 179/691 (25%), Gaps = 49/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P+  P   +                  
Sbjct: 8   RPIFAWVIALIIMLAGILSI-----RSLPVSQYPNIAPPTVV---------ISANYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        ITL+F      +    +V   LQG
Sbjct: 54  AKIVEDSVTQVIEQRMTGIDHLRYISSTSDSFGNASITLTFNAEADPDIAQVQVQNKLQG 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +   +         +++             + +  +     D +       
Sbjct: 114 AMTLLPQEVQSQGVNVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANIQDPMSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L Q   T+  +       N        G            
Sbjct: 174 EIQLFGAQ-YAMRIWLDPLKLTQYNLTSLDVIAAIRSQNAQVSAGQLGGAPSVAGQELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   ++     F      +           
Sbjct: 233 TVSAQSRL-------------QTAEEFRKIILKSDISGANVFLGDVARVELGSESYAVVS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +   T        A ++         +           S   
Sbjct: 280 LYNGQPATGLAIKLATGANALDTASAVREKIAEMKPFFPQGLEVVYPYDTTPFVEQSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T A+LS+ G ++   ++  +V
Sbjct: 340 VVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSMAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G      R F+IT+  ++ +S+  A+ +  A+   +          I        +   
Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVLVALILTPALCATMLKPVKKGHGHIETGFFGWFNRTF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A    R+        +L        +         + +G +    +   
Sbjct: 520 DKLTNRYESSVAGIIKRSFRVMTIYVVLVIAVGWIFIRMPTAFLPDEDQGILFTQAILPT 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     LE +        +F  E+               Q + + +    + +   
Sbjct: 580 NSTQESTLKVLEKVSD------HFMAEEGVRSVFSVAGFSFAGQGQNMGIAFVGLKDWSE 633

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                         +  +  +    ++ + +
Sbjct: 634 REAPGMDVKSIAGRAMGVFGQMKDALVFAFV 664



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 81/246 (32%), Gaps = 6/246 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +   +           L        +++     +     ++    P
Sbjct: 259 NVFLGDVARVELGSESYAVVSLYNGQPATGLAIKLATGANALDTASAVREKIAEMKPFFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                           + I   +  ++ + + + + +++  + +   L     + + +  
Sbjct: 319 QGLEVVYPYDTTPFVEQSIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T    ++ G   N   + A++  IG  V+D +VV + +     +    +S  +   KS++
Sbjct: 379 TFAILSMAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPLEATRKSMD 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  V   +      +PMA   GS       F+I +   + ++   ++ +   +   +
Sbjct: 437 QITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCATM 496

Query: 824 YDWRAK 829
                K
Sbjct: 497 LKPVKK 502



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 73/261 (27%), Gaps = 11/261 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +       V  S   +         +   N     N           
Sbjct: 774  QYRMQPGDLDTWYVRNNKGDMVPFSAFATGTWEYGSPRLERFNGLPSMNIQGATAPGFST 833

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++ K+            + E              +  + I  +  L+   + 
Sbjct: 834  GAAMEIMEDLAKQLPPGFGVEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 888

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 889  ESWSVPFAVVLVVPLGIIGALIAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 948

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 949  ---YEKGSGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++ +    IF      + +  
Sbjct: 1006 MMSSTFLGIFFVPLFFVIVER 1026


>gi|168204876|ref|ZP_02630881.1| protein-export membrane protein SecF [Clostridium perfringens E
           str. JGS1987]
 gi|168208641|ref|ZP_02634266.1| protein-export membrane protein SecF [Clostridium perfringens B
           str. ATCC 3626]
 gi|168214139|ref|ZP_02639764.1| protein-export membrane protein SecF [Clostridium perfringens CPE
           str. F4969]
 gi|168215566|ref|ZP_02641191.1| protein-export membrane protein SecF [Clostridium perfringens NCTC
           8239]
 gi|169343550|ref|ZP_02864549.1| protein-export membrane protein SecF [Clostridium perfringens C
           str. JGS1495]
 gi|182624412|ref|ZP_02952196.1| protein-export membrane protein SecF [Clostridium perfringens D
           str. JGS1721]
 gi|169298110|gb|EDS80200.1| protein-export membrane protein SecF [Clostridium perfringens C
           str. JGS1495]
 gi|170663675|gb|EDT16358.1| protein-export membrane protein SecF [Clostridium perfringens E
           str. JGS1987]
 gi|170713164|gb|EDT25346.1| protein-export membrane protein SecF [Clostridium perfringens B
           str. ATCC 3626]
 gi|170714378|gb|EDT26560.1| protein-export membrane protein SecF [Clostridium perfringens CPE
           str. F4969]
 gi|177910415|gb|EDT72792.1| protein-export membrane protein SecF [Clostridium perfringens D
           str. JGS1721]
 gi|182382148|gb|EDT79627.1| protein-export membrane protein SecF [Clostridium perfringens NCTC
           8239]
          Length = 289

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 82/287 (28%), Positives = 146/287 (50%), Gaps = 8/287 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            +     ISIL  +     +FT G+N+GIDF+GG Q+ +      + + V   ++     
Sbjct: 7   KKKIWFTISILIIVIGFGFMFTKGMNFGIDFRGGTQVVINMGTDFNKTDVDKIVDEYSKD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ Q    E     +       +     + E    K   +       +   +G  + R+
Sbjct: 67  AVTNQVNGTELQIKAKELNSSQVNDIFKALKEKYDLKDDAL------VSQNEIGASVGRD 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L    IV ++I+ I MLIY+ IRF++ F + AI  L+ D+  T+  +A+FGI  N   +A
Sbjct: 121 LTTNAIVALVIAVIGMLIYVVIRFEFSFGIAAIIALLHDVLITISVYAVFGITINTPFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +V++DR+R+N +      S  ++ D SI +T+ RS+ T++   I+++
Sbjct: 181 AILTIVGYSINDTIVIFDRIREN-RKKLRGKSVEEIADMSITQTMSRSINTTLTTLITIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + ++    +  FA P+  GI   A SSIFIA+PI   + + +    
Sbjct: 240 CVYIF-VPTVRDFAFPLIVGIASGACSSIFIASPIWCILANRQKNKK 285


>gi|161618273|ref|YP_001592160.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Brucella
           canis ATCC 23365]
 gi|161335084|gb|ABX61389.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Brucella
           canis ATCC 23365]
          Length = 1051

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 158/565 (27%), Gaps = 39/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI-----RILPVAQYPELTPP-------------QVVVSATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +        +   S+     ++T++FA     +     V  
Sbjct: 50  PGASAETVAQTVAAPLEQQINGVENMLYMQFSSLGSGTMQLTVTFALGTDPDQATINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 110 RVQRATSSLPQEVQRLGVTVDKRFTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 170 PGVSDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 230 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 278 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 398 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I++    + I    +     
Sbjct: 458 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALTLTPALCALILKPGHHEPILPFRIFNRAF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 518 ERVTSGYTRGVRFFLKRATIGLIIF 542



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 303 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 363 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 419 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 478 ISVTLSGLVALTLTPAL 494



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 775  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + + +   ++   +               G   +I   I + + +  ++
Sbjct: 835  DAIKAMQEVAAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 889

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 890  ERWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 947  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ A   + F        I     K 
Sbjct: 1007 MLAATFIATFFIPMFYSLIARKPPKK 1032



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 139/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 532  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 580

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 581  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 640

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 641  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 700

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 701  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 751

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 752  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    +AA +      I     
Sbjct: 800  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVAAQVLPQGYQIAWTGS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 860  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYERWSLPLAVITAVPFAIFGALLAT 913

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 914  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 973

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 974  TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1033


>gi|217975349|ref|YP_002360100.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Shewanella baltica OS223]
 gi|217500484|gb|ACK48677.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS223]
          Length = 1044

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 70/691 (10%), Positives = 179/691 (25%), Gaps = 49/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P+  P   +                  
Sbjct: 8   RPIFAWVIALIIMLAGILSI-----RSLPVSQYPNIAPPTVV---------ISANYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        ITL+F      +    +V   LQG
Sbjct: 54  AKIVEDSVTQVIEQRMTGIDHLRYISSTSDSFGNASITLTFNAEADPDIAQVQVQNKLQG 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +   +         +++             + +  +     D +       
Sbjct: 114 AMTLLPQEVQSQGVNVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANIQDPMSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L Q   T+  +       N        G            
Sbjct: 174 EIQLFGAQ-YAMRIWLDPLKLTQYNLTSLDVIAAIRSQNAQVSAGQLGGAPSVAGQELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   ++     F      +           
Sbjct: 233 TVSAQSRL-------------QTAEEFRKIILKSDISGANVFLGDVARVELGSESYAVVS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +   T        A ++         +           S   
Sbjct: 280 LYNGQPATGLAIKLATGANALDTASAVREKIAEMKPFFPQGLEVVYPYDTTPFVEQSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T A+LS+ G ++   ++  +V
Sbjct: 340 VVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSMAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G      R F+IT+  ++ +S+  A+ +  A+   +          I        +   
Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVLVALILTPALCATMLKPVKKGHGHIETGFFGWFNRTF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A    R+        +L        +         + +G +    +   
Sbjct: 520 DKLTNRYESSVAGIIKRSFRVMTIYVVLVIAVGWIFIRMPTAFLPDEDQGILFTQAILPT 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     LE +        +F  E+               Q + + +    + +   
Sbjct: 580 NSTQESTLKVLEKVSD------HFMAEEGVRSVFSVAGFSFAGQGQNMGIAFVGLKDWSE 633

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                         +  +  +    ++ + +
Sbjct: 634 REAPGMDVKSIAGRAMGVFGQMKDALVFAFV 664



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 81/246 (32%), Gaps = 6/246 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +   +           L        +++     +     ++    P
Sbjct: 259 NVFLGDVARVELGSESYAVVSLYNGQPATGLAIKLATGANALDTASAVREKIAEMKPFFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                           + I   +  ++ + + + + +++  + +   L     + + +  
Sbjct: 319 QGLEVVYPYDTTPFVEQSIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T    ++ G   N   + A++  IG  V+D +VV + +     +    +S  +   KS++
Sbjct: 379 TFAILSMAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPLEATRKSMD 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  V   +      +PMA   GS       F+I +   + ++   ++ +   +   +
Sbjct: 437 QITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCATM 496

Query: 824 YDWRAK 829
                K
Sbjct: 497 LKPVKK 502



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 73/261 (27%), Gaps = 11/261 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +       V  S   +         +   N     N           
Sbjct: 774  QYRMQPGDLDSWYVRNNKGDMVPFSAFATGTWEFGSPRLERFNGLPSMNIQGATAPGFST 833

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++ K+            + E              +  + I  +  L+   + 
Sbjct: 834  GAAMEIMEDLAKQLPPGFGVEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 888

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 889  ESWSVPFAVVLVVPLGIIGALVAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 948

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 949  ---YEKGSGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++ +    IF      + +  
Sbjct: 1006 MMSSTFLGIFFVPLFFVIVER 1026


>gi|88658259|ref|YP_507890.1| preprotein translocase subunit SecD [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88599716|gb|ABD45185.1| protein-export membrane protein SecD [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 505

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 173/520 (33%), Positives = 295/520 (56%), Gaps = 23/520 (4%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             I+ +++C + + + LPNF+    L      + K +++LGLDL+GG +L+LE D  +++
Sbjct: 8   KPIVVTLLCVLAIYLILPNFINSKFL------LSKQKVNLGLDLQGGVYLLLEADFKEYL 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    DE+  FL  + I    +   Q+K+ L    S+    I       ++    + 
Sbjct: 62  KERMYSLYDEMSEFLSSKKIEYSKLDVEQDKLVLVLKSSQDFNKIKLFDNKNVRVFEQE- 120

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                          +I +    +    ++ + I  S+  IR+R+D+ G  E  I   G 
Sbjct: 121 --------------GQIVMSFYDSYKASLLRNVISDSISNIRRRLDKSGTKEIIINSHGK 166

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYLVED 245
            RI +Q+PG  D S+++ LLG TAK++FH +   +            L+D  GN Y +  
Sbjct: 167 DRISLQIPGVHDTSQIKTLLGKTAKLTFHLLENVSQLSSINPLTTVLLKDHRGNTYPILK 226

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
           KVEISG  L    ++        VV    +   A++F ++T++N  KP A+VLDG VLTA
Sbjct: 227 KVEISGDSLID-VSSGINNLGNVVVHFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTA 285

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           P+I + I +G  +ISGNFT+ETA  L+ +L++G+LP+ L ++EE+ +G+ LG++ I +G 
Sbjct: 286 PIIREPILTGSGEISGNFTVETAKELSILLKSGALPVPLKVIEEKTIGSSLGAEYIKQGR 345

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A++  +V + +F+I  Y  +G++A   +  N++  + +L+LL ATLTLP +AGI L +G
Sbjct: 346 LAMIISIVAVSIFIIFSYRIFGVLAVIGLVFNIVFIITILTLLQATLTLPGLAGITLTVG 405

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           ++VD+N+L+ ERI+EE +  + +  +++ GF  A STIFDSN+T LI   ++F  G G +
Sbjct: 406 MSVDANVLIFERIKEELKSTKKLKWAVESGFKNAMSTIFDSNVTTLIVAAIMFVIGSGPI 465

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            GFAIT+ + IL SMF+AI++ + ++   IR   +K++ I
Sbjct: 466 SGFAITLSIGILCSMFSAITLTKMLIDLYIRLFNLKTLSI 505



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/171 (21%), Positives = 80/171 (46%), Gaps = 5/171 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  E I++G + +IIS +A+ I+I   ++  F + A+  L+ +I   +    L  
Sbjct: 331 TIGSSLGAEYIKQGRLAMIISIVAVSIFIIFSYRI-FGVLAVIGLVFNIVFIITILTLLQ 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A +   +G SV+  V++++R+++ +K        +  ++      +     +
Sbjct: 390 ATLTLPGLAGITLTVGMSVDANVLIFERIKEELKSTKK---LKWAVESGFKNAMSTIFDS 446

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++   I    M V G   I  FAI ++ GI+ +  S+I     +L+ +Y  
Sbjct: 447 NVTTLIVAAIMFVIGSGPISGFAITLSIGILCSMFSAI-TLTKMLIDLYIR 496


>gi|68536128|ref|YP_250833.1| preprotein translocase subunit SecF [Corynebacterium jeikeium K411]
 gi|260578823|ref|ZP_05846730.1| protein-export membrane protein SecF [Corynebacterium jeikeium ATCC
           43734]
 gi|68263727|emb|CAI37215.1| protein-export membrane protein SecF [Corynebacterium jeikeium
           K411]
 gi|258603121|gb|EEW16391.1| protein-export membrane protein SecF [Corynebacterium jeikeium ATCC
           43734]
          Length = 443

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/320 (20%), Positives = 126/320 (39%), Gaps = 12/320 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L       + ++ R    GI +   +  +  +   G   GIDF+GG ++ +
Sbjct: 36  SEAQGFFEKLYNGNGGFRIVQNRGRLYGILVAVVVACLLSILVRGFTLGIDFEGGTRMTM 95

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMV 638
                   S V    E+            G  +           S  Q     + +    
Sbjct: 96  PPAGGATESSVSEIFENATGIAPQSTQTVGSGDAESIEITSERLSEEQIREARSALFNEY 155

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
             K           +   V       + +K ++ + +  + + +YI  R +   A  AI 
Sbjct: 156 HPKNNVGEVTQDAISDSTVSESWGSSITKKMLIALGVFLLTVFLYIAFRMERDMAAAAII 215

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSIS 756
            L++D+T   G +AL G E +   V  +LT++ YS+ D VVV+D++ +N      +T  +
Sbjct: 216 CLLIDLTVVSGIYALVGFEVSPATVIGLLTILAYSLYDTVVVFDKVHENTAGLFGSTRAT 275

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMA-----VWGGSVIGSFAIPMAFGIVVAASS 811
           + +  + +IN+T+ RS+ TS+ + + +  +      + G   +   A+    G++    S
Sbjct: 276 YAEETNLAINQTIMRSINTSIFSLVPIASLLVVAVGIMGVGTLKDLALVQFIGVIAGTFS 335

Query: 812 SIFIAAPILLFIYDWRAKNA 831
           SIF AAP+L+     + K  
Sbjct: 336 SIFFAAPLLVTFKMRQQKYK 355


>gi|317492887|ref|ZP_07951311.1| hydrophobe/amphiphile efflux-1 family RND transporter
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919009|gb|EFV40344.1| hydrophobe/amphiphile efflux-1 family RND transporter
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1050

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 72/687 (10%), Positives = 177/687 (25%), Gaps = 51/687 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------VSISAVY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAQTVQDTVTQIIEQNMNGIDNLMYMSSTSDSSGSVSITLTFQSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  S
Sbjct: 110 KLQLATPLLPQEVQQQGISVEKSSSSFLMVAGFISEDGSMSQDDIADYVASNIKDPISRS 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     T   +     + NN       G        
Sbjct: 170 EGIGDVTLFGAQ-YAMRIWLDPNKLNNYQMTPLDVINQIKIQNNQIAAGQLGGAPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    R        I       
Sbjct: 229 QLNASIIAQTRL-------------QTPEEFGKILMKVQADGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +     E      A L          +           
Sbjct: 276 NVIARFNGKPAAGLGIKLATGANALDAAEGVKKELAKLEPFFPASLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLLEAIVLVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMEQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +                   
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMVLSVLVAMILTPALCATMLKPVEKGGHGKTTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + +A        + +   ++     +  +         + +G     V
Sbjct: 516 NNMFEKSTEHYTNSVAGILRGTGRYLLIYLVIVVGMGLLFVRMPTSFLPDEDQGIALTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L  +    +  +  + +  F V      G           +K    
Sbjct: 576 QLPAGATQERTNKVLAEVTDYFLDKEKANVQSVFTVSGFGFSGQGQNNGLAFVSLKPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGI 670
                + +            ++    +
Sbjct: 636 RSGADNKVPAIIARATGAFSKIKDGLV 662



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 95/263 (36%), Gaps = 7/263 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G I + V A+    L    + +E           F+G+    + +
Sbjct: 232 ASIIAQTRLQTPEEFGKILMKVQADGSRVLLRDVAKIELGGENYNVIARFNGKPAAGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +       ++    K+    P S             +  I + +  ++ + + +
Sbjct: 292 KLATGANALDAAEGVKKELAKLEPFFPASLKVVYPYDTTPFVKISINEVVKTLLEAIVLV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    + FG   N   +  ++  IG  V+D +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +  ++   KS+ +  G  V  +M      +PMA +GGS       
Sbjct: 412 VVENV--ERVMAEEGLPPKEATRKSMEQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 469

Query: 797 FAIPMAFGIVVAASSSIFIAAPI 819
           F+I +   +V++   ++ +   +
Sbjct: 470 FSITIVSAMVLSVLVAMILTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +      +  L T    +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMNLMEELVTKLPTGIGYDWTGMSYQERLSGNQAPSLYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L    + G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGVIGALLAATMRGMNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   +S+   L   + TS+A  + VLP+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLESVRMRLRPILMTSLAFMLGVLPLVISSGAGSGAQNAVGTGVMGGMISATI 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|257460760|ref|ZP_05625861.1| protein-export membrane protein SecD [Campylobacter gracilis
           RM3268]
 gi|257442091|gb|EEV17233.1| protein-export membrane protein SecD [Campylobacter gracilis
           RM3268]
          Length = 533

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 161/541 (29%), Positives = 269/541 (49%), Gaps = 34/541 (6%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           + ++++        + A P+                 +I+LGLDL+GG H++LEV  D+ 
Sbjct: 7   YRLLIFLAAVIFSAIFAAPSIFQTEKGS---------KINLGLDLQGGLHMLLEVQSDEA 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   ++  +  +    K++ + +  ++   +            +            +   
Sbjct: 58  VVSKIKSIAASVNYAAKRDDLLMDGLKLEGDSFEFEIL---DADEA-----SKFDAILHS 109

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                     +  + ++  + L+   ++    +AIEQ++E IR R+DQ G++E T+ + G
Sbjct: 110 AASGLD----IQKSGEKYRVTLTPEEVEATKKYAIEQAVETIRNRLDQFGLAEPTVAKQG 165

Query: 186 SHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR----------F 232
              IL++LPG +   D  R + L+   A +    V      +                  
Sbjct: 166 ESYILVELPGVKSAADEQRAKDLIAKAAHLQLMAVDDVRQDRAQTISAADARAYGDVIYP 225

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
              +   +YL+ +   + G  L  A   FD  T++P+++ + +  GA+ F + T  N+GK
Sbjct: 226 DVKNPNYKYLINEIPVLDGAMLVDAKVAFDQHTNQPIINFTLNSQGAQIFGDFTGKNVGK 285

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            LA+VLDG+V +AP IN+ I  G  QISG F +E A  +A  LR+G+L   + + E R++
Sbjct: 286 RLAIVLDGKVYSAPRINERIGGGSGQISGGFNVEEAHDVAIALRSGALLAPVKVSETRSI 345

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG DSI K   A+    V I++FMI  YG  GL AD ++ +N++  +A ++L GATL
Sbjct: 346 GPSLGQDSIDKSMAALSLAAVAILIFMIFYYGVAGLFADIALVVNILFLIACMALFGATL 405

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP +AGIVL IG+AVD+N+++NER+RE  R   S+  S++ G+  A S I DSNIT LI
Sbjct: 406 TLPGMAGIVLTIGMAVDANVIINERVREVLRTGVSIRQSINKGYENAMSAIVDSNITTLI 465

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +  L+ +G G V+GFA+TM + I+ SM TAI     M   ++   +        L    
Sbjct: 466 TSAALYAYGTGPVKGFAVTMSIGIVASMITAILGTHGMFELVMDKMEKSKNTALWLGYKV 525

Query: 533 L 533
            
Sbjct: 526 R 526



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 41/176 (23%), Positives = 88/176 (50%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP + ++ I K +  + ++A+A+LI++   +     L A   L+++I   +   ALFG
Sbjct: 344 SIGPSLGQDSIDKSMAALSLAAVAILIFMIFYYGV-AGLFADIALVVNILFLIACMALFG 402

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++ +R+R+ ++   T +S R  I+K     +   V +
Sbjct: 403 ATLTLPGMAGIVLTIGMAVDANVIINERVREVLR---TGVSIRQSINKGYENAMSAIVDS 459

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   I+   +  +G   +  FA+ M+ GIV +  ++I     +   + D   K+ 
Sbjct: 460 NITTLITSAALYAYGTGPVKGFAVTMSIGIVASMITAILGTHGMFELVMDKMEKSK 515


>gi|257453958|ref|ZP_05619234.1| AcrB protein [Enhydrobacter aerosaccus SK60]
 gi|257448623|gb|EEV23590.1| AcrB protein [Enhydrobacter aerosaccus SK60]
          Length = 1090

 Score =  191 bits (484), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 75/685 (10%), Positives = 178/685 (25%), Gaps = 37/685 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L        +  ++++P   P                      
Sbjct: 8   RPIFAWVIAMLIMLMGILAIF-----KLPIEQYPRIAPPTI---------SISATYPGAA 53

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    L     +   S      +ITL+F +    +    +V   LQ 
Sbjct: 54  AQTIEDSVTQVIEQKMKGLDGLMYMSSSSSSSGAAQITLTFENGTDPDTAQVQVQNKLQS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L    ++  +         +++     +       + +  +    +DQ+   E   
Sbjct: 114 AMSSLPEMVQRMGVNVNKSTSGFLMVLAMTSEDGSMDRADIADYLNSNVVDQLSRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +LR      + ++      N        G     ++     
Sbjct: 174 NVNVFGS-AYAMRIWLDPEKLRTYGLIPSDITSAIQAQNAQVSAGQLGQTPTDEARQ--- 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                     I+      ++     +    +        +        +        +  
Sbjct: 230 ---------AINATVTVQSYLQTPEQFRNILLKSNTDGAQIRLGDVAKVEIGSESYSEIA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S  +  +   T          L           V          S   
Sbjct: 281 RYNGEDAAGIGISLSSGANALSTRNAVEAKLKELEPNFPAGLKASVAYDTTPFVRLSIEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+F+ +   +  ++   ++ + ++ T  +L   G T+ + ++  +V
Sbjct: 341 VVRTLAEAIALVFLVMFLFLQSWRATIIPTLAVPVVILGTFGILYAFGYTINVLTLFAMV 400

Query: 422 LGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IGL VD  I+V E +    E   + +   +           +    +      + + F
Sbjct: 401 LSIGLLVDDAIVVVENVERLLEENPDMTPLEATRESMREISKVVIGIALILSAVFLPMAF 460

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F++T+  S+++S   A+    A+ + I++                    
Sbjct: 461 FGGSTGVIYRQFSVTLISSMVLSALVALIFTPALCVTILKR---TKAHDKHSGHQTGFFG 517

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                FMR                   +  + L          ++        D  V+ +
Sbjct: 518 AFNRMFMRLSEGYEKFVGRSIKMRWLYMIPYALVIAALVFLFTRIPSSFIPEEDQGVLLT 577

Query: 597 NLE-SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++          Q    + N   + Q +       T        +   +          
Sbjct: 578 LVQLPAGSTQNQTQAVIEKVNAYYKTQEKDLVQSVFTVNGFSFAGQGQNMGLAFVRLKDW 637

Query: 656 IVGPKISRELIRKGIVGVIISAIAM 680
              P             +      +
Sbjct: 638 DERPGKENTAQSIAKRAMGYFMTQV 662



 Score = 90.1 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 90/249 (36%), Gaps = 5/249 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + L  V       +      +    +   +        ++++    +E   K++    P
Sbjct: 260 QIRLGDVAKVEIGSESYSEIARYNGEDAAGIGISLSSGANALSTRNAVEAKLKELEPNFP 319

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                +         R  I + +  +  +   + + +++    W   +     + + I  
Sbjct: 320 AGLKASVAYDTTPFVRLSIEEVVRTLAEAIALVFLVMFLFLQSWRATIIPTLAVPVVILG 379

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G    FG   N+  + A++  IG  V+D +VV + + + +      ++  +   +S+ 
Sbjct: 380 TFGILYAFGYTINVLTLFAMVLSIGLLVDDAIVVVENV-ERLLEENPDMTPLEATRESMR 438

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     +  ++      LPMA +GGS       F++ +   +V++A  ++     + + I
Sbjct: 439 EISKVVIGIALILSAVFLPMAFFGGSTGVIYRQFSVTLISSMVLSALVALIFTPALCVTI 498

Query: 824 YDWRAKNAR 832
                 + +
Sbjct: 499 LKRTKAHDK 507



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 79/252 (31%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +          Q G  +   ++   +  ++    PG S  Q           
Sbjct: 794  VRNSDNQMIPFSSFATGEWQYGSPTLTRYNSLSSMNLQGNAAPGLSTGQAMTAMEQMIAK 853

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +   K   +      + +++  + +     +   W      +  + L
Sbjct: 854  LPKGISYEWTGLSLEEKKSGAQAPMLYAISILVVFLCLA---ALYESWSIPFAVLLVVPL 910

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +     F  L G+  ++     +LT++G S  + +++ +  ++         S  D + 
Sbjct: 911  GVLGAALFTGLRGLSNDIYLQVGLLTVVGLSAKNAILIIEFAKE---RQDLGHSLYDSVT 967

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +  + L   + TS+A  I V+P+ +    G     +    +  G+V A    +F     
Sbjct: 968  VAARQRLRPIIMTSLAFGIGVVPLFLATGAGSGSQNAIGTSVLGGVVSATILGVFFIPMF 1027

Query: 820  LLFIYDWRAKNA 831
             ++I        
Sbjct: 1028 YVWIRSLIKGKK 1039


>gi|299069180|emb|CBJ40438.1| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum CMR15]
          Length = 1053

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 81/684 (11%), Positives = 177/684 (25%), Gaps = 39/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L           + ++PS  P                      
Sbjct: 8   RPIFAWVLAIIVMLAGALSIA-----TLPIAQYPSIAPPAV---------AITATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    L        +        ITL+F +    +    +V   L  
Sbjct: 54  AKTLEDTVTQIIEQKMKGLDHLSYMASTSESSGTVTITLTFENGTDPDTAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      + +     +       + S  +     D +   E   
Sbjct: 114 ATPLLPQEVQQQGVQVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDALSRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   +       N        G     D+     
Sbjct: 174 DTTLFGSQ-YAMRIWLDPHKLSNFSLTPLDVKTAIQAQNAQVSAGQLGGMPATDNQQINA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      +   +    +        I           
Sbjct: 233 TITSQTRL-------------KTAEAFGNILLRTQADGAQVRLRDVARIELGSESYSTVG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T++      A L     P                S   
Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFPPGMKVQKPYDTTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++  +V
Sbjct: 340 VVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAACGFTINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPREATRKSMGQITGALIGVALVLAAVFVPMAFF 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F+IT+  ++ +S+  A+ +  A+   +     +K +              
Sbjct: 460 KGSTGVIYRQFSITIVSAMTLSVLVAMVLTPALCATL-----LKPVRKGHAQATTGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R      GI       S   +  + + + +   G ++L V      D   +   
Sbjct: 515 FNRTFDRGNHRYQGIVRHMLGKSRRYMAVYAVLFAMVVVGFVKLPVGFLPDEDQGTLF-V 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L  L  G  + +  D  +           D+V+    +       +              
Sbjct: 574 LAQLPPGATNARTEDVLRQVEHHFLVDQKDAVSGVFSVAGFSFAGSGQNMGFAFVKLRPW 633

Query: 658 GPKISRELIRKGIVGVIISAIAML 681
             +    L   G+V       A +
Sbjct: 634 NERKGEALSVSGVVARAFGFFATI 657



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 84/246 (34%), Gaps = 6/246 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +      +        L        +++   + ++    ++    P
Sbjct: 259 QVRLRDVARIELGSESYSTVGRYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          R  I + +  ++ +   + + +++  + +   L     + + +  
Sbjct: 319 PGMKVQKPYDTTPFVRISIEEVVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G  A  G   N   + A++  IG  V+D +VV + +     +    +  R+   KS+ 
Sbjct: 379 TFGVLAACGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPREATRKSMG 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  +  ++      +PMA + GS       F+I +   + ++   ++ +   +   +
Sbjct: 437 QITGALIGVALVLAAVFVPMAFFKGSTGVIYRQFSITIVSAMTLSVLVAMVLTPALCATL 496

Query: 824 YDWRAK 829
                K
Sbjct: 497 LKPVRK 502



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 74/266 (27%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +   A   V  +       S     +   N       L   +     
Sbjct: 776  PFRMTPEDIDKWYVRNSAGTMVPFTAFARVDWSSGSPRLERYNGVPSMEILGMAKPGSAS 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            S     ++E    K+             +     S +      + ++I  + +     + 
Sbjct: 836  SGEALAIVEAAVAKLPA-GIGYAWTGLSLQEKASSGQTTLLYTLSILIVFLCLA---ALY 891

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L +   L    L     ++     +LT IG +  + +++ +  ++ 
Sbjct: 892  ESWAIPFSVIMVVPLGVLGALLGAILTWKMNDVYFQVGLLTTIGLASKNAILIVEFAKE- 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
              L    +   +    +    L   + TS+A  + V+PM      G     +    +  G
Sbjct: 951  --LNAQGMRVVEAAMTAARMRLRPILMTSLAFILGVVPMVTGSGAGAGAQHALGTAVIGG 1008

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++     +IF      + +       
Sbjct: 1009 MLSGTVLAIFFVPLFFVLVRGLFRAK 1034


>gi|169795910|ref|YP_001713703.1| RND protein [Acinetobacter baumannii AYE]
 gi|301344930|ref|ZP_07225671.1| RND protein [Acinetobacter baumannii AB056]
 gi|301509918|ref|ZP_07235155.1| RND protein [Acinetobacter baumannii AB058]
 gi|301595362|ref|ZP_07240370.1| RND protein [Acinetobacter baumannii AB059]
 gi|88758848|emb|CAJ77844.1| AdeB [Acinetobacter baumannii AYE]
 gi|169148837|emb|CAM86706.1| RND protein [Acinetobacter baumannii AYE]
          Length = 1036

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 83/690 (12%), Positives = 179/690 (25%), Gaps = 54/690 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 8   RRPVFAWVIAIFIIIFGLLSI-----PKLPIARFPSVAPP-------------QVNISAT 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +IT +F      E     V 
Sbjct: 50  YPGATAKTINDSVVTLIERELSGVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQVVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 170 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S +              +        +            N+      
Sbjct: 229 QLITIPLSAQGQLSSLE-------------QFKNISLKSKTNGSVIKLSDVANVEIGSQA 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 276 YNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPEGMEFSIPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 336 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +         S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLSPKDATSKAMKEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSID 524
            + F  G      + F +TM +SIL S   A+ +  A+   I         +       D
Sbjct: 456 PMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           +           V   ++  I    + +        + +G       
Sbjct: 516 RSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFAGMKYWPTAFMPEEDQGWFMTSFQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                     R+ +   +       +       L       G S A   V          
Sbjct: 576 LPSDATAERTRNVVNQFENNLKDNPDVKSNTAIL-----GWGFSGAGQNVAVAFTTLKDF 630

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               S+                    + V+
Sbjct: 631 KERTSSASKMTSDVNSSMANSTEGETMAVL 660



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V     +    +++   +P 
Sbjct: 261 IKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 321 GMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  +S +D   K
Sbjct: 378 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLSPKDATSK 434

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPMA   GSV      F + M+  I+ +A  ++ +   +
Sbjct: 435 AMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPAL 493



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 786  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 845

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 846  GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 897

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 898  PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 954

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 955  TVAAAKLRLRPILMTSLAFTCGVIPLVIATGAS-SETQHALGTGVFGGMISATILA 1009


>gi|120600758|ref|YP_965332.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. W3-18-1]
 gi|120560851|gb|ABM26778.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. W3-18-1]
 gi|319428435|gb|ADV56509.1| proton-coupled multidrug efflux transporter, permease component,
           VmeB [Shewanella putrefaciens 200]
          Length = 1044

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 65/570 (11%), Positives = 151/570 (26%), Gaps = 38/570 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++PS  P   +                  
Sbjct: 8   RPIFAWVIALIIMLAGILSI-----RSLPVSQYPSIAPPTVV---------ISANYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        ITL+F      +    +V   LQG
Sbjct: 54  AKIVEDSVTQVIEQRMTGIDHLRYITSTSDSFGNASITLTFNAEADADIAQVQVQNKLQG 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +   +         +++             + +  +     D +       
Sbjct: 114 AMTLLPQEVQSQGVNVNKSSSGFLLVLGFVSTDGSLDKSDIADYVGSNVQDPMSRVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L Q   T+  +       N        G            
Sbjct: 174 EIQIFGAQ-YAMRIWLDPLKLTQYNLTSLDVVAAIRAQNAQVSAGQLGGTPSVAGQELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +      F      +           
Sbjct: 233 TVSAQSRL-------------QTPEEFRKIILKSDTSGANVFLGDVARVELGSESYSVVS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +   T E      A ++         +           S   
Sbjct: 280 LYNGKPATGLAIKLATGANALDTAEAVRAKIAEMKPFFPQGLEVVYPYDTTPFVEKSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T A+LS  G ++   ++  +V
Sbjct: 340 VVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+IT+  ++ +S+  A+ +  A+         +K +              
Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVLVALILTPALCAT-----MLKPLKKGHGHIETGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
               F R                  ++  +
Sbjct: 515 FNRGFDRLTNRYESSVAGIIKRGFRVMMIY 544



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 81/250 (32%), Gaps = 6/250 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       +   +           L        +++     +     ++ 
Sbjct: 255 TSGANVFLGDVARVELGSESYSVVSLYNGKPATGLAIKLATGANALDTAEAVRAKIAEMK 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  ++ + + + + +++  + +   L     + +
Sbjct: 315 PFFPQGLEVVYPYDTTPFVEKSIEGVVHTLLEAVVLVFLIMYLFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    +  G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 375 VLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPLEATR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F+I +   + ++   ++ +   +
Sbjct: 433 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPAL 492

Query: 820 LLFIYDWRAK 829
              +     K
Sbjct: 493 CATMLKPLKK 502



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 77/271 (28%), Gaps = 14/271 (5%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +       V  S             +   N     N           
Sbjct: 774  QYRMQPGDLDTWYVRNNKGDMVPFSAFAMGTWEYGSPRLERFNGLPAMNIQGATVPGFST 833

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++VK+            + E              +  + I  +  L+   + 
Sbjct: 834  GAAMDIMEDLVKQLPPGFGIEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 888

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 889  ESWSVPFAVVLVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEY 948

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 949  ---YEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYD---WRAKNAR 832
            ++ +    IF      + +      R + A+
Sbjct: 1006 MMSSTFLGIFFVPLFFVIVERIFSKRERKAK 1036


>gi|270489539|ref|ZP_06206613.1| putative inner membrane multidrug efflux protein BpeB [Yersinia
           pestis KIM D27]
 gi|270338043|gb|EFA48820.1| putative inner membrane multidrug efflux protein BpeB [Yersinia
           pestis KIM D27]
          Length = 627

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 64/574 (11%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITIAANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 PGVGDVQLFGSQ-YAMRIWMDPHKLNNYKLTPVDVINAIKIQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPSGLTVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFG   G   R F+IT+  ++++S+  A+ +  A+         +K I          
Sbjct: 456 MAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIKKGDHGPKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++              +   L  +
Sbjct: 511 FFGWFNNMFEKSTHHYTDSVANILRSTGRYLVIY 544



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 88/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 258 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + + +++  + +   L     + + + 
Sbjct: 318 PSGLTVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPIKK 502


>gi|296272193|ref|YP_003654824.1| protein-export membrane protein SecF [Arcobacter nitrofigilis DSM
           7299]
 gi|296096368|gb|ADG92318.1| protein-export membrane protein SecF [Arcobacter nitrofigilis DSM
           7299]
          Length = 323

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 96/285 (33%), Positives = 156/285 (54%), Gaps = 3/285 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM  R   +G S +  + SI LL T G+N+GIDF GG  + V   +   +  +R  L 
Sbjct: 10  YNFMGKRLPFLGFSTILVVTSIVLLLTKGVNFGIDFAGGTLVQVKYEKAAPIDKIRDILN 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             +    S     G  + ++        + + +  L    + + +      I+  +IVGP
Sbjct: 70  KTKEYKNSSITKFGSDDEIIIRVTT--STNSVSSDLSDEIRNVLKGTGNFEIRRVDIVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++  ++S I ++IY+  RF+W FAL +I  L+ D+T  LG  +LFGIE N
Sbjct: 128 KVGGELREKGLMAFVLSLIVIMIYVSFRFEWRFALASILALVHDVTIALGAVSLFGIEVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVLTL+GYS+ND ++V+DR+R+ ++  +       ++++S++ TL R+  TS+  
Sbjct: 188 LDILAAVLTLLGYSLNDTIIVFDRIREGVQT-SKESDLSKVVNESVSRTLSRTTLTSLTT 246

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           F  V  +  +GG +I  FA  +  GI+V   SSIFIAA  L+ + 
Sbjct: 247 FFVVATLYFFGGEIINGFAFTLLVGIIVGTYSSIFIAASFLVQLK 291


>gi|121998474|ref|YP_001003261.1| preprotein translocase subunit SecF [Halorhodospira halophila SL1]
 gi|121589879|gb|ABM62459.1| protein translocase subunit secF [Halorhodospira halophila SL1]
          Length = 320

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 95/288 (32%), Positives = 157/288 (54%), Gaps = 3/288 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +  +   I F+  R  G G+S +  + SI  L   GLN GIDF GG  + V     V+
Sbjct: 1   MEIFKNDPNIDFLGRRRIGFGLSAVLLVLSIGSLLWQGLNLGIDFTGGTLVEVGYEESVE 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ V + L+     D    +F   +  +VR+    G   A   + E V  K+ E      
Sbjct: 61  VAEVEAALQGTDYADAQVLHFGSPREIMVRIPPMEGVEQA--AISEEVLAKLREAHDGVD 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  E VGP+I REL  +G++ ++ +   +L+Y+  RF++ FALGA+  L+ DI   LGF
Sbjct: 119 LRRVEFVGPQIGRELTEQGLLALLYALGGVLVYVAFRFEYRFALGAVAALVHDIVLILGF 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F+L  + F+LT +AA+L  IGYS+ND +V+ DR+R+N        +   +++ +IN+TL 
Sbjct: 179 FSLTRLTFDLTVLAALLATIGYSLNDTIVISDRIRENFLKVRKG-TTEYVMNLAINQTLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           R++ TS+   + V  +   GG +I  FA+ +  G++V   SSIF+A+ 
Sbjct: 238 RTLVTSLTTLLVVGSLLFLGGEIIHGFAMALLVGVLVGTYSSIFVASA 285


>gi|167838730|ref|ZP_02465589.1| multidrug efflux pump BpeF [Burkholderia thailandensis MSMB43]
          Length = 1061

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 153/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVVILLAGMIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTVKSSPTLTMVVHLISPNDSYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   T   +       N      + G          Q 
Sbjct: 176 QVQLWGAGDYAMRVWLDPQKVAQRNLTADDVVRAIREQNVQVAAGVIGASPTLPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNARGRLQNEE-------------EFGDIVVKTAPDGGVTHLRDIARIELDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +      A L+          +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLAISDEVRKTMAELKQDFPAGVDYKIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL L G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLLFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLTAQAATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +       L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRAMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGKTPFEAAVEASRLRLRPILMTSIAFIMGVVPLVLSTGAGAEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 89/253 (35%), Gaps = 12/253 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +            + + V+K
Sbjct: 252 IVVKTAPDGGVTHLRDIARIELDASEYGLRSLLDNKPAVAMAINQSPGANSLAISDEVRK 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 312 TMAELKQDFP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLIAVPVSIVGTFSLLLLFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ENGL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIVVAASSS 812
           + +    K++ E  G  +  ++   A    L       G     FA+ +A   V++A +S
Sbjct: 428 TAQAATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNS 487

Query: 813 IFIAAPILLFIYD 825
           + ++  +   +  
Sbjct: 488 LTLSPALSAILLK 500


>gi|327190989|gb|EGE58043.1| multidrug-efflux system, acriflavin resistance protein [Rhizobium
           etli CNPAF512]
          Length = 1061

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 73/580 (12%), Positives = 163/580 (28%), Gaps = 40/580 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +   +G +        Q  + ++P   P               +V+    
Sbjct: 10  RPIFAAVISILFLVVGGIA-----YTQLPVSQYPEIAPPT-------------IVVRTSY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     +    +T++F      + +   V  
Sbjct: 52  PGADPQTIADTVSTPLEQQINGVEDMLYMSSYSSADGAMSLTITFKLGTDLDKVQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + T       +++            +  S     +  D +   
Sbjct: 112 RVSIALPRLPEEVQRLGVTTDKSSPDLMMVVHLLSPSHRYDQLYVSNYARNRIRDVLVRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     T+  +       N    G   G   +   +
Sbjct: 172 DGVGDVQIFGERQYSMRIWLDPEKLSAYGMTSDDVVSALRDQNVQVSGGKIGAPPVTGKN 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y V      S +                   I       R         I       
Sbjct: 232 AFEYTVRTDGRFSDVREFRY-------------VIVKSTGAGRLVQLQDVARIELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +   T      L   +     P     +          
Sbjct: 279 VTNSYLNNDPAVALGIFARPGTNALDTAHQVQTLMKDISQNFPPGLEYRIVYDTTEFISD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T A  A LV IV+ + +   +  ++   +I +++I T A+L   G +L + ++
Sbjct: 339 SINEVYRTIAEAAILVAIVVLVFLQSWRTAIIPIVAIPVSLIGTFAILLAFGFSLNMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  +   +  +      + +   ++  +   V  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNLARGMTAKQASHVTMDEVGTAVVAISLVLVAVFVPT 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFL 533
            F     G   R FA+T+ ++  IS   ++++  A+    +  +                
Sbjct: 459 AFIPGISGQFYRQFAVTISVTTAISALNSLTLSPALAGILLKPHDHETKRPNIATRLGRG 518

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
           + D     F R       +        I L  +     G+
Sbjct: 519 LADGFNRGFDRMSSGYSWVVRHLVSSWIGLTCSMLAFAGL 558



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 133/437 (30%), Gaps = 20/437 (4%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
                   AG          +  +V    +    + +    + +      Y  +       
Sbjct: 614  VGNAVQFAGFSGATFTNASNAGVVFVPFKSFAEREEGGENA-NKIIGELYMKLQSIQEAF 672

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +IA       G G   GF + +       M   + + R MM      + +  +       
Sbjct: 673  IIAIPPPSVRGVGNSGGFKMQISDLENADMTRVLGLARQMMGAAATTEGLTGVFTTFSDA 732

Query: 531  FFLIPDCIAIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   I     R            +SI   +  +      G  Y +  +   Q  +  
Sbjct: 733  SPQYFLSIDRDKARFLNVPIPNIFNALSINLGVAYVNDFNAFGRVYQVRAQADRQYRMDK 792

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGE----KNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               + L V  +    + +G +            + + + +      +           KK
Sbjct: 793  EDILSLKVRSATGALVPLGTLMDIQDSSGPALVQRYNMYVSVPLQGNPTPGTSTGDAIKK 852

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAI 697
            + E+        T     +++ +    G   V I +   + +++ +      W   L  I
Sbjct: 853  MEELAAKILPPGTTFEWTELAYQETHTGNTAVYIFALSVIFVFLALAAQYESWVLPLAII 912

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
              + L +   L   +L G++ N+     ++ LIG +  + +++ +  R   +      S 
Sbjct: 913  LIVPLAVLAALIGVSLRGMDNNVLTQIGLIVLIGLAAKNAILIVEFAR---QAEDEGKSP 969

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             D   ++ +  L   + T+ A    VLP+A+    G  +  S    +  G++      +F
Sbjct: 970  VDAAIEASHLRLRPILMTAFAFIFGVLPLAIATGPGAEMRQSLGTAVFSGMLGVTFFGLF 1029

Query: 815  IAAPILLFIYDWRAKNA 831
            +     + +  WR   +
Sbjct: 1030 LTPVFYVVLRGWRRNRS 1046



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 79/203 (38%), Gaps = 9/203 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +     +++ + +     +    + +T         E+ R      I+ AI +L+++ 
Sbjct: 304 DTAHQVQTLMKDISQNFPPGLEYRIVYDTTEFISDSINEVYRTIAEAAILVAIVVLVFLQ 363

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  A+  I  + + +  T      FG   N+  +  ++  IG  V+D +VV + + 
Sbjct: 364 ---SWRTAIIPIVAIPVSLIGTFAILLAFGFSLNMLTLFGLVLAIGIVVDDAIVVVENVE 420

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +N+      ++ +     +++E     V  S+      +P A      G     FA+ ++
Sbjct: 421 RNLA---RGMTAKQASHVTMDEVGTAVVAISLVLVAVFVPTAFIPGISGQFYRQFAVTIS 477

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
               ++A +S+ ++  +   +  
Sbjct: 478 VTTAISALNSLTLSPALAGILLK 500


>gi|325107440|ref|YP_004268508.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces brasiliensis DSM 5305]
 gi|324967708|gb|ADY58486.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces brasiliensis DSM 5305]
          Length = 1072

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/544 (12%), Positives = 156/544 (28%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L ++I  +G +           + ++P       I                  
Sbjct: 10  RPIFATVLSTLIVLVGCIS-----YVALPVAQYPEVALPTVI---------VRASYPGAT 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + ++             +  +T++FA     +     V   +  
Sbjct: 56  PETIADTVATPLEQEINGVENMVYMESQSTTDGSMTLTITFALGTDADQAQVLVQNRVAV 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T       + +            +  S  +  Q  D +   +   
Sbjct: 116 AEPRLPEEVRQIGVTTRKASPNILTVVHMLSPDNSRDQLYISNYVYLQVRDVLARIDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  ++  L  T   +       N        G + L      Q 
Sbjct: 176 DVQVFGARQYSMRVWLDMEKIATLDLTAGDVVSSLRQQNIQVAAGTIGQQPLEQPIDLQI 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +   +   R         I           
Sbjct: 236 PVAAQGRL-------------KTADEFADIVVKADDDGRIVRLSDVARIELGAQDYSVNS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + S +   +   T +      A +     P     +          S   
Sbjct: 283 YLNDDNAVAMVISERPNSNAVATADQIVAKMAEMSKDFPPGVGYDIIYNPTEFIKESIDE 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++ +F+ +   +  +V   +I +++I T A++  +G +L   S+ G+V
Sbjct: 343 VYMTLVQATLLVVLTVFVFLQNWRSSIVPVAAIPVSLIGTFAVMLGIGFSLNNLSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+ VD  I+V E +     +  S   +         S +  + +  +   V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERLIDEGLSPREATRKAMEEVSSALIATTLVLIAVFVPTAFLP 462

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FAIT+ +S  IS   ++++  ++   +++ +  K      L  F       
Sbjct: 463 GISGQFYRQFAITIAVSTAISTLVSLTLSPSLCALLLKPRSAKRGPFERLYFFLFGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 GFNR 526



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 84/245 (34%), Gaps = 7/245 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R  L +      S+ N D     ++  +          +++  + +   +  P   
Sbjct: 266 SDVARIELGAQDYSVNSYLNDDNAVAMVISERPNSNAVATADQIVAKMAEMSKDFPPGVG 325

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                     I   +    +  V  + + +L        W  ++  +  + + +  T   
Sbjct: 326 YDIIYNPTEFIKESIDEVYMTLVQATLLVVLTVFVFLQNWRSSIVPVAAIPVSLIGTFAV 385

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   N  ++  ++  IG  V+D +VV + +    +L    +S R+   K++ E   
Sbjct: 386 MLGIGFSLNNLSLFGLVLAIGIVVDDAIVVVENV---ERLIDEGLSPREATRKAMEEVSS 442

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDW 826
             + T++      +P A      G     FAI +A    ++   S+ ++  +  L +   
Sbjct: 443 ALIATTLVLIAVFVPTAFLPGISGQFYRQFAITIAVSTAISTLVSLTLSPSLCALLLKPR 502

Query: 827 RAKNA 831
            AK  
Sbjct: 503 SAKRG 507



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/200 (8%), Positives = 63/200 (31%), Gaps = 10/200 (5%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWI---RFKWYF 692
               + + ++               I+ +    G   + I  + +  +++ +      W  
Sbjct: 846  QAIQMMEQLAEERLPPGFGFEWTDIAYQEKAAGNTALFIFPLCVLFVFLALSAQYESWLL 905

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I  + + +   +      G++ N+      + L+G +  + +++ +  ++      
Sbjct: 906  PLAVILIVPMCLLCAIAGVWFRGMDNNILTQIGFVVLVGLACKNAILIVEFAKQE---ED 962

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
                       +        + T+ +  + V+P+ +    G  +  +    +  G++   
Sbjct: 963  AGKDRIAAAISACRLRFRPVMMTAFSFILGVIPLLIATGAGSEMRRALGTAVFSGMLGVT 1022

Query: 810  SSSIFIAAPILLFIYDWRAK 829
               +       + +  +  K
Sbjct: 1023 LFGLIFTPIFYVVLRRFAKK 1042


>gi|297182391|gb|ADI18556.1| preprotein translocase subunit secf [uncultured gamma
           proteobacterium HF4000_23L14]
          Length = 308

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 156/291 (53%), Gaps = 7/291 (2%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I F+  R + +  S L  I SI  L   GL  GIDF GG  + V   +  DL  +R+ 
Sbjct: 9   PTIDFINKRKYAMAFSALLLIVSIISLGLQGLKLGIDFTGGTLIEVGYQQTADLEDIRTK 68

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S      + Q F  +   L+ L+ Q   S   +  +  +      +     ++  E V
Sbjct: 69  LASANYAGTNVQYFGSDTEVLILLEPQAISSAKLSSSIIQM------LGDGIDVRRVEFV 122

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GPK+  EL   G + ++ + I +LIY+  RF++ FALG+I  L+ D+  TLG F++  I 
Sbjct: 123 GPKVGEELTNDGGLALLYALIGILIYVAFRFEYRFALGSIAALVHDVIITLGVFSILQIA 182

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AA+L +IGYS+ND +VV+DR+R+N            +++ ++N+TL R++ TS+
Sbjct: 183 FDLTVLAAILAVIGYSLNDTIVVFDRIRENFLSTRHIEPMP-IVNDALNQTLARTLMTSL 241

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + +L +   GG VI SFA  +  G+V+   SSIF+A+ ++L +   + 
Sbjct: 242 TTLLVLLALFYLGGEVIHSFAGALIIGVVIGTYSSIFVASTMILALGISKE 292


>gi|227539294|ref|ZP_03969343.1| acriflavin resistance protein D [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227240976|gb|EEI90991.1| acriflavin resistance protein D [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 1063

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 76/540 (14%), Positives = 164/540 (30%), Gaps = 41/540 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  +G+L        +  + +FPS  P               + +   
Sbjct: 7   RRPVLSIVISLIILFLGILSLA-----KLPVTQFPSISPPK-------------VNITAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N  L +     L   L    G+   +     +    I + F         A  V 
Sbjct: 49  YPGANNELLIKSVVIPLERGLNGVPGMKYMTSDAGNDGEASIQVVFDLGTDPNVAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V +KL     +  +  T E+   ++      D   +             + ++  
Sbjct: 109 NRVSSVVNKLPPLVVREGVKITREEPNMLMYINLYSDDPKADQKFLFNYADINVMSELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P RL     ++ ++       +        G    + S
Sbjct: 169 VSGVGFADILGTREYAMRIWLKPDRLTAYNISSDEVMEALNQQSLEASPGKTGESSGKRS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++     +                     I   + G          ++    ++
Sbjct: 229 QSFEYILKYPGRFNNE-------------TDYGNIILKAKSGGEFVRLKDVADVEFGSSM 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA-GSLPIKLNIVEERNVGAD 355
                 L                + +  I+    L   L+           +        
Sbjct: 276 YDIYSTLNGKPSAAITVKQSYGSNASDVIKNVKELMTDLQKNNFPKGMHYDISYDVSRFL 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV IV+F+ +   +  L+   ++ ++++ T A++S  G TL + 
Sbjct: 336 DASIEKVVHTLFEAFILVAIVVFLFLGDWRSTLIPALAVPVSLVGTFAIMSAFGITLNMI 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           S+  +V+ IG+ VD  I+V E +  +  +   S   + +         I    +      
Sbjct: 396 SLFALVMAIGVVVDDAIVVIEAVHAKMEEKNLSPLKATEEAMHEISGAIIAITLVMASVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F  G      R F+ITM  SI++S   A+++  A+   I++    K+     +S+F
Sbjct: 456 IPVAFMSGPVGVFYRQFSITMVSSIMLSGVAALTLTPALCALILKNNHGKAKKKTWISKF 515



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 92/246 (37%), Gaps = 7/246 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V      S      S  N        V+  Y    S     V E++        P    
Sbjct: 265 DVADVEFGSSMYDIYSTLNGKPSAAITVKQSYGSNASDVIKNVKELMTDLQKNNFPKGMH 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
            +      +     I K +  +  + I + I +++    W   L     + + +  T   
Sbjct: 325 YDISYDVSRFLDASIEKVVHTLFEAFILVAIVVFLFLGDWRSTLIPALAVPVSLVGTFAI 384

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            + FGI  N+ ++ A++  IG  V+D +VV + +    K+   ++S     +++++E  G
Sbjct: 385 MSAFGITLNMISLFALVMAIGVVVDDAIVVIEAVH--AKMEEKNLSPLKATEEAMHEISG 442

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDW 826
             +  ++      +P+A   G V      F+I M   I+++  +++ +   +  L + + 
Sbjct: 443 AIIAITLVMASVFIPVAFMSGPVGVFYRQFSITMVSSIMLSGVAALTLTPALCALILKNN 502

Query: 827 RAKNAR 832
             K  +
Sbjct: 503 HGKAKK 508



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 76/249 (30%), Gaps = 9/249 (3%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V     +    S  +               +    +   S A         K I E+  
Sbjct: 790  YVKNDKDQMVPYSDFMHLEKVYGLSEITRHNMYNSAEVSGSPAPGYSSGQAIKAIQEVAN 849

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWI---RFKWYFALGAITTLILD 703
                +   I    IS++ + +G   + I  I +  +Y+ +      +   L  I +L   
Sbjct: 850  SKLPRGFGIDWAGISKDEVSRGNEAIYIFLICLGFVYLILSAQYESFILPLPVILSLPTG 909

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I        L G+E N+ A  A++ LIG    + V++ +      K     IS      +
Sbjct: 910  IFGAFLCLKLLGLENNIYAQVAMVMLIGLLGKNAVLIVE--FAVQKKAEEGISVVKAAIE 967

Query: 764  SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    ++P+    G   +   +     A G+ +     + I   + 
Sbjct: 968  GATIRFRPILMTSFAFIAGLIPLVMATGPGALGNRTIGTAAAGGMFIGTIFGLLIIPGLY 1027

Query: 821  LFIYDWRAK 829
                    +
Sbjct: 1028 YIFGTIAER 1036


>gi|326390124|ref|ZP_08211685.1| protein-export membrane protein SecF [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993772|gb|EGD52203.1| protein-export membrane protein SecF [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 303

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 140/297 (47%), Gaps = 4/297 (1%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I  +        IS +  +  +  +  +G N+GIDF GG  +     +  D   +
Sbjct: 3   QHRFHIDVIGKTKIWFAISGIMILIGVIAMLVNGFNWGIDFTGGTIMEFKIGKSFDTKDI 62

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              L   ++ D   Q    + + +        +    + + ++   +    +  + +  +
Sbjct: 63  IKILNEYKVKDYQIQKIGTKGDHVSIKTSPISNETRLSIIKDI---EKKYNLTENDLIMS 119

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           + VGP +  E+    I+ +++++  ML Y+  RF +  +L A+  L+ ++   +  +A+F
Sbjct: 120 QQVGPSLGAEIKFGMILALLVASAVMLTYLGFRFNFEMSLAAVVGLLHNVIILISIYAIF 179

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  +   +AA+LT+  YS++D +V++DR+R N+K    S  + ++ + SIN+TL RS+ 
Sbjct: 180 KITVDSPFIAALLTVFSYSLHDTIVIFDRIRDNLKSMRRS-DYAEIANVSINQTLTRSIN 238

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +   I ++ M   G   +  FA+P+  GI   A SSIFI+ P+ + I +   +  
Sbjct: 239 VVLTVLIMLVLMYFLGPKALKDFALPLLIGITWGAYSSIFISTPLWVLIKNREKRRK 295


>gi|312196181|ref|YP_004016242.1| protein-export membrane protein SecF [Frankia sp. EuI1c]
 gi|311227517|gb|ADP80372.1| protein-export membrane protein SecF [Frankia sp. EuI1c]
          Length = 400

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 131/315 (41%), Gaps = 11/315 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   +    A  F+  R     IS +     +  +   G + GIDF GG      +
Sbjct: 1   MSSPITRFLRGQHAFDFIGRRRVWYIISGVLLTICVLSMIVRGFSLGIDFSGGAVFQFPS 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                +   R  L    +        + + +  +R+Q         T+V   +     + 
Sbjct: 61  KGH-SIEDARGALHHAGVNADDAVIQELQTSKQLRVQTPVLTDTQTTKVTTAI---EQDF 116

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
              S   +   VG      +  K I G++I  + +++Y+ +RF+W  A  A+  L+ D+ 
Sbjct: 117 GVKSNEIDISTVGASWGSTITNKAIEGLVIFLVLVMVYLSVRFEWKMAAAAMAALVHDLV 176

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDK 763
            TLG ++L G E     V AVL ++G+S+ D VVV+DR+R+N     T    ++ +  + 
Sbjct: 177 VTLGVYSLIGFEVTPDTVIAVLAILGFSLYDTVVVFDRIRENTAGMATSSKRTYAEATND 236

Query: 764 SINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           S+NETL RS+ TS  A I V  +        G   +   A+    GI     SSIFIAAP
Sbjct: 237 SLNETLIRSLNTSFIALIPVASLLFVGAGLLGAGTLKDLALAQFVGIASGTYSSIFIAAP 296

Query: 819 ILLFIYDWRAKNARI 833
           +L+           +
Sbjct: 297 LLVDFKRSEQAVKAL 311


>gi|305431873|ref|ZP_07401040.1| protein-export membrane protein SecD [Campylobacter coli JV20]
 gi|304444957|gb|EFM37603.1| protein-export membrane protein SecD [Campylobacter coli JV20]
          Length = 526

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 158/548 (28%), Positives = 288/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + ++++  +   G++ +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKITYRLVVFIAVFIFGVVFSLPSFLQSE---------RGVKINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD  + V   ++  +  L     KE I    +    + +  +  D+       + +   
Sbjct: 52  GVDNQEAVKSKIKSVASSLSYSFNKENILNDGLNIHDDSLDFTLLDNADIVKTENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                          L V   +   +I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------NGLNVQREDMHYTISFTSEEVKSIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
            TI + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTIAKQGEDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMSQASNMSDAEAAS 218

Query: 232 ------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A       ++ PV++ + +  G+++F + 
Sbjct: 219 YGLVLVPDSRNPNLKYPLKSIPILDGSMLTDARVGLSDTSNYPVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   + IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASIFIVVFMVLYYGMAGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R+  ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLREGANIKASIEQGYKNAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ ++ L+ +G GAV+GFA+T+G+ I++SM TAI     M  + +R  +  +   
Sbjct: 459 SNITSLVTSIALYAYGTGAVKGFAVTLGIGIVVSMITAIWGTHGMFDYFMRRIEKSNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRK 526



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I ++I +++++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASIFIVVFMVLYYGM-AGIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++      + +  I++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRE---GANIKASIEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I+    +  +      K+ 
Sbjct: 458 DSNITSLVTSIALYAYGTGAVKGFAVTLGIGIVVSMITAIWGTHGMFDYFMRRIEKSN 515


>gi|78048559|ref|YP_364734.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036989|emb|CAJ24702.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1047

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 68/685 (9%), Positives = 172/685 (25%), Gaps = 43/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++PS  P                      
Sbjct: 8   RPIFAWVLAIIVMLAGILSIA-----TLPIAQYPSIAPPAVA---------IAANYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    L        +        ITL+F +    +    +V   L  
Sbjct: 54  AQTLEDTVTQVIEQKMKGLDHLSYMASTSESSGAVTITLTFENGTDPDTAQVQVQNKLSL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      + +     +       + S  +     + I   E   
Sbjct: 114 ATPLLPQEVQQQGVTVTKSATNFLNVLAFTSEDGSMSDSDLSDYVAANVQETISRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G      +     
Sbjct: 174 DTTLFGSQ-YAMRVWMDPNKLSNFSLTPVDVRNAIQAQNAQISAGQLGALPAVANQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +   +    +        I           
Sbjct: 233 TITAQTRL-------------KTAEQFENILLRTQSDGSQVRLGDVARIELGSESYNTVG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T+               P                S   
Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFFPPGMKVQKPYDTTPFVRISIEQ 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++  +V
Sbjct: 340 VVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGFTINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     + Q S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEQLSPKDATRKSMDQISGALIGVALVLAAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------IDINP 527
            G      R F+IT+  ++ +S+  A+ +  A+   +++                 +   
Sbjct: 460 SGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVHKGHGLATTGFFGWFNRLF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     +   + +  + L ++     +         + +G + + V    
Sbjct: 520 DRGNTGYQGVVRHMLGKGWRYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLVQLPP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     L+ ++   +  Q       F V      G           ++        
Sbjct: 580 GATNARTSEVLKQVEHHFLVDQKESVAGVFAVTGFSFAGSGQNVGFAFVKLRPWDERTGK 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
             ++ +           +    +  
Sbjct: 640 GQSVTDVAARAGAFFAGIRDAKVFA 664



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 89/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++   R ++   ++  +  
Sbjct: 258 SQVRLGDVARIELGSESYNTVGRYNGKPAAGLAIKLATGANALDTVRAIDKSLEEQEKFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PPGMKVQKPYDTTPFVRISIEQVVHTLVEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   + A++  IG  V+D +VV + +     +    +S +D   KS+
Sbjct: 378 GTFGVLAAFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEQLSPKDATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  +  ++      +PMA + GS       F+I +   + ++   ++ +   +   
Sbjct: 436 DQISGALIGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSVLVAMILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 78/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +   A   V  +   +         +   N       L         
Sbjct: 776  PYRMNPQDIDHWFVRNSAGTMVPFNAFATASWQSGSPRLERYNSVPSMEILGMALPGAAS 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            S    +++E    K+   +          +  +      + G++  +   I  L    + 
Sbjct: 836  SGEAMQIVEAAAAKLPPGIGF----EWTGLSRQEKASSGQTGLLYSVSILIVFLCLAALY 891

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L +  TL    L     ++     +LT IG +  + +++ +  R+ 
Sbjct: 892  ESWAIPFSVILVVPLGVFGTLLAAMLTWKMNDVYFQVGLLTTIGLASKNAILIVEFARE- 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
              L+    S      ++    L   + TS+A  + V+P+ +    G     +    +  G
Sbjct: 951  --LHEGGKSLVAAALEAARMRLRPILMTSLAFILGVVPLVLTSGAGAGAQHALGTAVIGG 1008

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++     +IF      + +     + 
Sbjct: 1009 MLSGTVLAIFFVPLFFVLVCGLFQRR 1034


>gi|87309529|ref|ZP_01091664.1| acriflavine resistance protein B [Blastopirellula marina DSM 3645]
 gi|87287837|gb|EAQ79736.1| acriflavine resistance protein B [Blastopirellula marina DSM 3645]
          Length = 1051

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 78/593 (13%), Positives = 174/593 (29%), Gaps = 40/593 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G +           + ++P+  P                      
Sbjct: 10  RPIFASVLSFIIVLVGGIT-----YLTLPVSQYPNVAPPTVQ---------VRASYPGAT 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        S     + + T++F      ++    V   +  
Sbjct: 56  PQVIADTVATPIEQEMNGVDDMLYMESSSSADGSMLLTVTFKLGTDLDDAQVLVQNRVAI 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + TT +    +++   N        +  S     +  D +   +   
Sbjct: 116 ALPRLPEAVRQIGVTTTKQIPDMLLVVHLNSPDSSRDQLYISNYAFLRVRDAMMRLDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +    D  R+  L  T   +       N      + G      +   Q 
Sbjct: 176 DVRIAGGNEYAMRVWLDIERMTYLDLTPGDVVDAIRGQNVQVAAGVIGQPPTDKTGAFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I       R         +           
Sbjct: 236 NVTTRGRL-------------RDPEEFEQVIVKRGDDGRVTRLGDIARLELGAQDYSRVS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        I   +   +   T +      A L           +          S + 
Sbjct: 283 YLDGKPAIAVIVYQRPGTNAVDTADEVKRTMAELEKDFPQGVGYEIAYNPTNFVEESIAE 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++ +F+ +   +  ++   +I +++I T A +  LG TL   S+ G+V
Sbjct: 343 VFDTLVITTVLVVLTVFLFLHGWRPTIIPVIAIPISLIGTFAAMQSLGVTLNTLSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +     +  +   +         S +  + +  +   V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERLIGEGMAPRAATHKAMDEVGSALIATTLVLIAVFVPTVFIP 462

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---------IDINPLS 529
              G   + FA+T+ +S   S F ++++  AM   ++R K  +          +      
Sbjct: 463 GISGQFYQQFALTIAISTAFSTFVSLTLSPAMCALLLRPKNEEKKGMGKVGDILFGWFFR 522

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            F    D  +  + R     + +S +  +  + LL     ++G+   G I   
Sbjct: 523 WFNRTFDVTSDLYGRLIGRTIRVSAVVLVGYVGLLACTWYSFGMVPTGFIPPQ 575



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 77/214 (35%), Gaps = 9/214 (4%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                 +    R +  ++K   + V      N      +   E+    ++  ++  + + 
Sbjct: 300 TNAVDTADEVKRTMAELEKDFPQGVGYEIAYNPTNFVEESIAEVFDTLVITTVLVVLTVF 359

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++     W   +  +  + + +  T       G+  N  ++  ++  IG  V+D +VV 
Sbjct: 360 LFL---HGWRPTIIPVIAIPISLIGTFAAMQSLGVTLNTLSLFGLVLAIGIVVDDAIVVV 416

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFA 798
           + +    +L    ++ R    K+++E     + T++      +P        G     FA
Sbjct: 417 ENV---ERLIGEGMAPRAATHKAMDEVGSALIATTLVLIAVFVPTVFIPGISGQFYQQFA 473

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + +A     +   S+ ++  +   +   + +  +
Sbjct: 474 LTIAISTAFSTFVSLTLSPAMCALLLRPKNEEKK 507



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/214 (8%), Positives = 69/214 (32%), Gaps = 11/214 (5%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                  +      +E + ++           +      +    +I    + V+     + 
Sbjct: 838  TVAGYSTGQSLATIEQLAEQNLPPGFGYAWTDIAFQERQAGNTIIYLFPLAVLF----VF 893

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +  +++ W   L  I  + L +   +      G++ N+      + L+G +  + +++
Sbjct: 894  LTLAAQYESWILPLAIILIVPLCLLFAILGIWFRGMDNNILTQIGFIVLVGLACKNAILI 953

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +  +             +    +    L   + T+ +  + V+P+ +    G  +    
Sbjct: 954  VEFAK---AEEDAGKDRFEAAVSACRLRLRPILMTAFSFILGVIPLLIATGAGYEMRRVL 1010

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               +  G++      +F+     + +  +  + A
Sbjct: 1011 GTAVFAGMLGVTIFGLFLTPVFYVVLRKFAKQPA 1044


>gi|120555054|ref|YP_959405.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Marinobacter
           aquaeolei VT8]
 gi|120324903|gb|ABM19218.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Marinobacter aquaeolei VT8]
          Length = 1038

 Score =  191 bits (483), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 71/529 (13%), Positives = 166/529 (31%), Gaps = 32/529 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I   G L      L    ++ +P   P                 L   
Sbjct: 8   QRPKFAFVISILITLAGALA-----LRILPVNMYPDMAPPQVQ---------VTATLPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               V   +    ++  + ++       S       KITL+F      +     V   + 
Sbjct: 54  SAQVVEEAVIRPVEQQLNGVEGMIYMESSASSDGTAKITLTFESGTDTDIAQVNVQNRVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  ++ + +    ++       +     +  S       ++ +G     
Sbjct: 114 LAEPFLPDEVRRQGVIVSKQSGNMLLGINLTSSRDDLDGVFLSNYASNNLVEALGRVAGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P R+  L  T A+++      N        G   +       
Sbjct: 174 GSAEVMGAKDYSMRVWLNPRRMAALDVTVAEVAAALKEQNQIVAAGKLGQSPVPAGQQFV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++ +  +S                +    I +               I          
Sbjct: 234 YSIQTRERLS-------------DPEEFGQTILWSRPDGGFVRLRDVGRIELGSRSYTST 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L        +       +     E    L     A         V          S S
Sbjct: 281 AKLNNRDTAFLVIYQLPDANALDVAERVKALVESASASFPEGVEYSVLYDTTEFISRSIS 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T     GLV++V+F+ +   +  L+   +I +++I T A++S+LG ++   ++ G+
Sbjct: 341 EVVVTLFQAVGLVILVVFLFLQNWRATLIPSIAIPVSLIGTFAVMSVLGYSINTITLFGL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E +    ++    +  ++    +     +  + +  L   V + F
Sbjct: 401 VLAIGIVVDDAIVVIENVERILKEEALPIREAVSKAMAEVTGPVIATTLVLLAVFVPVAF 460

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
                G   + F++T+ ++++IS   A+++  A+ + ++     +S+  
Sbjct: 461 MPGITGKLYQQFSVTISVAVIISSVNALTLSPALCVALLGRGGDQSVRW 509



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 81/201 (40%), Gaps = 8/201 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                ++E       E V  S + +T     +   E++      V +  + + +++    
Sbjct: 306 ERVKALVESASASFPEGVEYSVLYDTTEFISRSISEVVVTLFQAVGLVILVVFLFLQ--- 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +  T    ++ G   N   +  ++  IG  V+D +VV + +    
Sbjct: 363 NWRATLIPSIAIPVSLIGTFAVMSVLGYSINTITLFGLVLAIGIVVDDAIVVIENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
            L   ++  R+ + K++ E  G  + T++      +P+A   G        F++ ++  +
Sbjct: 421 ILKEEALPIREAVSKAMAEVTGPVIATTLVLLAVFVPVAFMPGITGKLYQQFSVTISVAV 480

Query: 806 VVAASSSIFIAAPILLFIYDW 826
           ++++ +++ ++  + + +   
Sbjct: 481 IISSVNALTLSPALCVALLGR 501



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 77/222 (34%), Gaps = 9/222 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            ++F ++         A           +  +              +  +E+    +  VI
Sbjct: 812  QHFNLKRSVTLSGEPAPGFASGDAINAMEALSESLPQGYEFSWSGQSLQEIQAGNLAAVI 871

Query: 675  ISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
                 + +Y+++      W   +  +  + L +   +    L G+  N+ A   ++ LIG
Sbjct: 872  FVLALVFVYLFLVAQYESWSLPVAVLGAVPLALAGAMAGLWLVGLANNIYAQVGLVLLIG 931

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
             S    +++ +     M+L  + +S  +   K+        + T+++  + VLP+     
Sbjct: 932  LSTKTAILIVEFA---MQLRASGLSTAEAAQKAAVLRFRAVLMTALSFVLGVLPLVFASG 988

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G +   S  I +  G+V A      +      +I   R + 
Sbjct: 989  AGAASRVSLGITVLSGMVAATILGTLLVPVFYQWIQSIRDRR 1030


>gi|322508462|gb|ADX03916.1| AdeB [Acinetobacter baumannii 1656-2]
          Length = 1036

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 81/685 (11%), Positives = 179/685 (26%), Gaps = 44/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 8   RRPVFAWVIAIFIIIFGLLSI-----PKLPIARFPSVAPP-------------QVNISAT 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +IT +F      E     V 
Sbjct: 50  YPGATAKTINDSVVTLIERELSGAKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQVVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 170 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S +              +        +            N+      
Sbjct: 229 QLITIPLSAQGQLSSLE-------------QFKNISLKSKTNGSVIKLSDVANVEIGSQA 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 276 YNFAILENGKPATAAAIQLSPGANAVKTAEVVRAKIEELKLNLPEGMEFSIPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 336 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +         S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLSPKDATSKAMKEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      + F +TM +SIL S   A+ +  A+   I++            + F 
Sbjct: 456 PMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL---ANRPV 589
              D +  ++       +  ++   +  + +               +             
Sbjct: 516 RSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFTGMKYWPTAFMPEEDQGWFMTSFQ 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S   +      +        D             G S A   V              S
Sbjct: 576 LPSDATAERTRNVVNQFENNLKDNPDVKSNTTILGWGFSGAGQNVAVAFTTLKDFKERTS 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
           +                    + V+
Sbjct: 636 SASKMTSDVNSSMANSTEGETMAVL 660



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V    V+    +++   +P 
Sbjct: 261 IKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEVVRAKIEELKLNLPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 321 GMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  +S +D   K
Sbjct: 378 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLSPKDATSK 434

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPMA   GSV      F + M+  I+ +A  ++ +   +
Sbjct: 435 AMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPAL 493



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 786  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 845

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 846  GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 897

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 898  PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 954

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 955  TVAAAKLRLRPILMTSLAFTCGVIPLVIASGAS-SETQHALGTGVFGGMISATILA 1009


>gi|152995028|ref|YP_001339863.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Marinomonas
           sp. MWYL1]
 gi|150835952|gb|ABR69928.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Marinomonas sp. MWYL1]
          Length = 1042

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 78/684 (11%), Positives = 188/684 (27%), Gaps = 40/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GL   L        + ++P+  P                      
Sbjct: 9   RPVFAWVISIAIMLAGLASIL-----NLPISQYPNVAPPTI---------SISATYSGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + L         S    +  I ++F      +    +V   +Q 
Sbjct: 55  AETVENSVTQILEQQLTGLDGLLYFSSSSSSSGRTSINVTFEQGTDADIAQVQVQNKIQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    ++N +         ++++    +     A + S  ++    D +   +   
Sbjct: 115 ITSNLPESVQRNGVTVRKSNSDFLMVAAIYDETDTDTANDISDFLVSSVQDPVSRVDGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L       + +S      N        G   +        
Sbjct: 175 SIQVFGA-EYAMRIWLDPLKLASYKLMPSNVSSAINAQNTQVAAGSLGAYPIIKGQELNV 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I   +             +           
Sbjct: 234 TVTAQSKL-------------QTAEQFRDIILAYDDSGATVRLSDVAKVELGSESYGYIP 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +          +   T E    +   L +             N      S   
Sbjct: 281 RLNGHPASGMAVMLAPGANALSTSEAVKKVLNGLSSTLPDGYKLSFPVDNTAFIRISIEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+F+ +   +  L+   ++ + ++ T  +L + G ++   ++ G+V
Sbjct: 341 VVKTLFEAIVLVVIVMFIFLQNWRATLIPAIAVPVVLLGTFGVLEIFGFSINTLTMFGVV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     +++ S   +         S +    +      + + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERVMEEDKLSPKEATIKSMKEITSALVGIAVVLSAVFLPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+IT+  S+ +S+  A+++  A+   +++     +               
Sbjct: 461 SGSTGVIYRQFSITIVASMTLSVIVALTLTPALCATLLKANHGGNNKGLGGWFNRNFDRA 520

Query: 538 IAIQFMRARFWGVGISILFSICSIC-------LLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               F                  +        ++         + +G + + V       
Sbjct: 521 TDKYFGSVSSIIKKPVRWMLGYGVIVAGLAGLMVTLPSGFLPTEDQGRVMVMVSLPEGAA 580

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +S     +  ++   ++ +  + E  F +      G           +K     + P ++
Sbjct: 581 MSRTDKVMRDVESYFMNQEKDNVEDIFTISGFNFMGSGQNAGMAFVALKDWSKRVGPANS 640

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
                         +    I  +I
Sbjct: 641 ASAIVGRSYGAFAGIRDARIFSLI 664



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 78/202 (38%), Gaps = 8/202 (3%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            S A  +VL  +   + +   LS   +          E+++     +++  I M I++  
Sbjct: 303 TSEAVKKVLNGLSSTLPDGYKLSFPVDNTAFIRISIEEVVKTLFEAIVLVVIVMFIFLQ- 361

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              W   L     + + +  T G   +FG   N   +  V+  IG  V+D +VV + +  
Sbjct: 362 --NWRATLIPAIAVPVVLLGTFGVLEIFGFSINTLTMFGVVLSIGLLVDDAIVVVENV-- 417

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    +S ++   KS+ E     V  ++      LPMA + GS       F+I +  
Sbjct: 418 ERVMEEDKLSPKEATIKSMKEITSALVGIAVVLSAVFLPMAFFSGSTGVIYRQFSITIVA 477

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            + ++   ++ +   +   +  
Sbjct: 478 SMTLSVIVALTLTPALCATLLK 499



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 79/234 (33%), Gaps = 7/234 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N                 G  S   F+G  ++ ++    PG S              
Sbjct: 787  VRGNDNTMTPFSAFAKSEWTYGPKSLTRFNGLASYEIQGSGAPGVSSGAAMDELQNIADA 846

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +           S +      + +++  + +     +   W      I  + L
Sbjct: 847  LPGGVTGSWSGLSYQERLSSGQTQILYAISILVVFLCLA---ALYESWTVPFSVILVIPL 903

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +  +     L G+E ++    A+LT IG S  + +++ +   +    Y   ++  D   
Sbjct: 904  GVIGSAAAAHLRGLENDVYFQVALLTTIGLSSKNAILIVE-FAE--AAYRRGLNVWDAAA 960

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            ++    L   + TSMA  +  LP+A+  G+   S  I +  GIV    ++  +A
Sbjct: 961  QAARLRLRPIIMTSMAFMVGTLPLALSSGAGANS-RISIGSGIVGGTLTATVLA 1013


>gi|323944440|gb|EGB40514.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H120]
          Length = 1037

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPETVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGK--TPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|307266559|ref|ZP_07548091.1| protein-export membrane protein SecF [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306918413|gb|EFN48655.1| protein-export membrane protein SecF [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 303

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 140/297 (47%), Gaps = 4/297 (1%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I  +        IS +  +  +  +  +G N+GIDF GG  +     +  D   +
Sbjct: 3   QHRFHIDVIGKTKIWFAISGIMILIGVIAMLVNGFNWGIDFTGGTIMEFKIGKSFDTKDI 62

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              L   ++ D   Q    + + +        +    + + ++   +    +  + +  +
Sbjct: 63  IKILNEYKVKDYQIQKIGTKGDHVSIKTSPISNETRLSIIKDI---EKKYNLTENDLIMS 119

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           + VGP +  E+    I+ +++++  ML Y+  RF +  +L A+  L+ ++   +  +A+F
Sbjct: 120 QQVGPSLGAEIKFGMILALLVASAVMLTYLGFRFNFEMSLAAVVGLLHNVIILISIYAIF 179

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  +   +AA+LT+  YS++D +V++DR+R N+K    S  + ++ + SIN+TL RS+ 
Sbjct: 180 KITVDSPFIAALLTVFSYSLHDTIVIFDRIRDNLKSMRRS-DYTEIANVSINQTLTRSIN 238

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +   I ++ M   G   +  FA+P+  GI   A SSIFI+ P+ + I +   +  
Sbjct: 239 VVLTVLIMLVLMYFLGPKALKDFALPLLIGITWGAYSSIFISTPLWVLIKNREKRRK 295


>gi|167035421|ref|YP_001670652.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           putida GB-1]
 gi|166861909|gb|ABZ00317.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida GB-1]
          Length = 1050

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 61/548 (11%), Positives = 150/548 (27%), Gaps = 33/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIAVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLLVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L +   T   +       N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNKFQLTPVDVKTAVAAQNVQVSSGQLGGLPAMPGTQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFEKILLKVNNDGSQVRLGDVAQVGLGGENYAVSA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +        L     P    +           S S 
Sbjct: 280 QFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFFPPGVKAVFPYDTTPVVTESISG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++ +S+  A+    A+   +++  K           F      
Sbjct: 460 GGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRN 519

Query: 538 IAIQFMRA 545
                   
Sbjct: 520 FDRSVNGY 527



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 89/247 (36%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   +S Q      + L        +++   + L    K +    
Sbjct: 258 SQVRLGDVAQVGLGGENYAVSAQFNGKPASGLAVKLATGANALDTAKALRETIKGLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   I  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++     +LPMA +GGS       F+I +   + ++   ++     +   
Sbjct: 436 EQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPLKK 502



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 71/185 (38%), Gaps = 10/185 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            E + +       L +       G     +L    +  +  +   + +++    +   W  
Sbjct: 837  EAMAEVERIAGELPSGVGFSWTGMSYEEKLSGSQMPAL-FALSVLFVFLCLAALYESWSI 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  + L I   L   +L G+  ++  +  +LT IG +  + +++ +  ++   L+ 
Sbjct: 896  PIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKE---LHE 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  D   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A 
Sbjct: 953  QGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISAT 1012

Query: 810  SSSIF 814
              +IF
Sbjct: 1013 VLAIF 1017


>gi|254445457|ref|ZP_05058933.1| RND transporter, HAE1 family [Verrucomicrobiae bacterium DG1235]
 gi|198259765|gb|EDY84073.1| RND transporter, HAE1 family [Verrucomicrobiae bacterium DG1235]
          Length = 1040

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 69/548 (12%), Positives = 161/548 (29%), Gaps = 38/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L  +     Q  + R+P+  P +              V     
Sbjct: 8   RPIFSWVIALTIMIAGGLSMM-----QLPISRYPTVAPPSV---------AITAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        +      + IT +F      +    +V   +Q 
Sbjct: 54  AQVVEDSVTQIIEQSLTGLDGLIYLSATSEASGVSTITATFETGTDPDMAQVQVQNKIQS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    ++  +  +   +  +++     D      ++ +  ++    DQI   E   
Sbjct: 114 ATALLPSQVQQQGVTVSKSGQGFLMVLGFVSDDGSMGRVDIADYLVANVADQIARVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+ L+    + + ++      N        G           +
Sbjct: 174 SARVFGGQ-YAMRIWLDPNTLKSYQLSVSDITAAVQAQNQQVSIGQLGGAPSVPGQEINF 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +               T +    +                 +           
Sbjct: 233 TINTRGRL-------------QTTDEFENIVVRSNPDGSVLRLSDVARVELGSQEYGQEV 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S  +  +   T      L   +          ++   N      +   
Sbjct: 280 HYNGQQAGGMAVSLASGANSLETAAAVKELVKEIEPFLPEGLRVVIPFDNTPFVQVAIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  L+   +I + ++ T  +LS+LG ++ + ++  ++
Sbjct: 340 VVYTLLEAVALVFIVMFLFLQNWRATLIPTIAIPVVLLGTFGILSILGFSINMLTMFAMI 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERLMSEEGLSPKEAARKSMDQITGALVGIGVVLSAVFVPMAFL 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F++T+  ++ +S+  AI    A+         +K I+     +       
Sbjct: 460 GGATGVIYQQFSVTIVSAMGLSVIVAIVFTPALCAT-----MLKPIEKGHHIKDTGFFGW 514

Query: 538 IAIQFMRA 545
             + F RA
Sbjct: 515 FNLTFDRA 522



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 86/233 (36%), Gaps = 6/233 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           LS V       Q           +   +        +S+     ++ + K+I   +P   
Sbjct: 262 LSDVARVELGSQEYGQEVHYNGQQAGGMAVSLASGANSLETAAAVKELVKEIEPFLPEGL 321

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
                       +  I+  +  ++ +   + I +++  + W   L     + + +  T G
Sbjct: 322 RVVIPFDNTPFVQVAIKGVVYTLLEAVALVFIVMFLFLQNWRATLIPTIAIPVVLLGTFG 381

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             ++ G   N+  + A++  IG  V+D +VV + +     +    +S ++   KS+++  
Sbjct: 382 ILSILGFSINMLTMFAMILAIGLLVDDAIVVVENV--ERLMSEEGLSPKEAARKSMDQIT 439

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           G  V   +      +PMA  GG+       F++ +   + ++   +I     +
Sbjct: 440 GALVGIGVVLSAVFVPMAFLGGATGVIYQQFSVTIVSAMGLSVIVAIVFTPAL 492



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 79/245 (32%), Gaps = 13/245 (5%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 +      +       V  S   S   S     +   N         +        
Sbjct: 777  YRMQPEDFETWSVRNANGEMVPFSAFGSTEWSYGSPRLERYNGVSAVQIQGQGSAGVSSG 836

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   V ++V++         T  + +         L+        +S + + + +   +
Sbjct: 837  DAMLEVEKLVQQLPEGFGIEWTASSYQERQAGDQTTLLY------ALSLLMVFLALAALY 890

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +    L I   +      G E ++    A+LT +G +  + +++ +  + N
Sbjct: 891  ESWTIPTAVLLAAPLGIVGAVLANMARGFERDVYFQVAMLTTVGLTSKNAILIVEFAKIN 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVIGSFAIPMAF--G 804
            +    + +   D    ++ + L   + TS+A  + V+P+A+  G       AI      G
Sbjct: 951  L---ESGMHLLDATLHAVRDRLRPILMTSLAFGLGVVPLAIASGAGSGAQMAIGTGVLGG 1007

Query: 805  IVVAA 809
            ++V  
Sbjct: 1008 MLVGT 1012


>gi|116051845|ref|YP_789312.1| preprotein translocase subunit SecF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296387664|ref|ZP_06877139.1| preprotein translocase subunit SecF [Pseudomonas aeruginosa PAb1]
 gi|313109238|ref|ZP_07795206.1| protein-export membrane protein SecF [Pseudomonas aeruginosa 39016]
 gi|115587066|gb|ABJ13081.1| protein-export membrane protein SecF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310881708|gb|EFQ40302.1| protein-export membrane protein SecF [Pseudomonas aeruginosa 39016]
          Length = 306

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 83/285 (29%), Positives = 161/285 (56%), Gaps = 5/285 (1%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I FM  R     ++++ ++ ++   FT G+N+G+DF GG  + +   +P DL  VR  L
Sbjct: 7   TINFMGIRNIAFAVTLILTVIALGSWFTKGINFGLDFTGGTLIELTYEQPADLGKVRGQL 66

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                 D   Q+F   ++ LVR+  +  +   +            +    + ++  E VG
Sbjct: 67  VGAGYEDAVVQSFGDARDVLVRMPSEDPELGKKVATALQQ----ADTGNPANLKRVEYVG 122

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P++  EL  +G +G++++   +L+Y+  RF+W FALGAI +L+ D    +G  + F + F
Sbjct: 123 PQVGEELRDQGGLGMLLALGGILLYVGFRFQWKFALGAILSLVHDAIIVMGVLSFFQVTF 182

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           +LT +AAVL ++GYS+ND +V++DR+R+N ++     S  + ++ S ++TL R++ TS++
Sbjct: 183 DLTVLAAVLAVVGYSLNDTIVIFDRVRENFRVLRK-ASLIENLNISTSQTLLRTIATSVS 241

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +++  +  +GG  +  F+I +  G++    SSI+IA  +L+++
Sbjct: 242 TLLAIAALLFFGGDNLFGFSIALFVGVMAGTYSSIYIANVVLIWL 286



 Score = 43.5 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 33/139 (23%), Positives = 68/139 (48%), Gaps = 4/139 (2%)

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
                K+ L A  S+  + I+ + +LS    T  L  +A ++  +G +++  I++ +R+R
Sbjct: 150 FRFQWKFALGAILSLVHDAIIVMGVLSFFQVTFDLTVLAAVLAVVGYSLNDTIVIFDRVR 209

Query: 440 EENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           E  R  +      ++  S +     TI  S  T L    +LFF GG  + GF+I + + +
Sbjct: 210 ENFRVLRKASLIENLNISTSQTLLRTIATSVSTLLAIAALLFF-GGDNLFGFSIALFVGV 268

Query: 497 LISMFTAISIVRAMMIFII 515
           +   +++I I   ++I++ 
Sbjct: 269 MAGTYSSIYIANVVLIWLN 287


>gi|300721970|ref|YP_003711250.1| multidrug efflux pump (RND family) [Xenorhabdus nematophila ATCC
           19061]
 gi|297628467|emb|CBJ89032.1| multidrug efflux pump (RND family) [Xenorhabdus nematophila ATCC
           19061]
          Length = 1049

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 67/689 (9%), Positives = 181/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     +  ++++P+  P               + +    
Sbjct: 8   RPIFAWVIAIITMLSGLLAIM-----KLPVEQYPAIAPPA-------------ISISTSY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                  +Q      +   +      V+      +     ITL+F  +   +    +V  
Sbjct: 50  PGADAATVQNTVTQVIEQNMNGIDNLVYMSSNSDSAGYMNITLTFEANTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D +   
Sbjct: 110 KLQLAMPLLPQEVQQQGINVEKTTSSFLMVTGFISEDGSMSQDDIADYVGANVKDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P +L     T   +       NN   G   G        
Sbjct: 170 TGVGETTLFGTQ-YAMRIWLNPEKLLNYKMTPLDVINAIKSQNNQVAGGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +S                +    +        +        +       
Sbjct: 229 RLNASIIAQTRLSSAE-------------EFSKILLRVNSDGSKISLSDVATVELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        +          +           
Sbjct: 276 NMIGRFNGKPSAGVGIKLATGANALNTSKAVKKALDEMSPFFPHGLTVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIFEVVKTLAEAILLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILAAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLSPKEATKKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F++T+  ++++S+  A+ +  A+ + +           +       
Sbjct: 456 MAFFGGATGAIYRQFSVTIVSAMILSVLVALILTPALCVTMLKPIAKGSHGSQTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D I         + +    L +  ++            + +G +   +
Sbjct: 516 NRLFEKSTLHYTDSIGRMLRGTGRYLLIYVALIAGMALMFTRLPSSFLPEEDQGVLLAMI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  L  +     + +    +  F V      G   +       +K    
Sbjct: 576 QLPSGSTQEQTQKVLNQVNDYFYTKEKDAVKSVFTVNGFGLAGQGQSNGLAFISLKDWDQ 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +            ++    +  
Sbjct: 636 RKDEKNKVSAIVDRANADFSQIKEAIVFA 664



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 93/243 (38%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + LS V +     +  ++  +        +        +++  ++ ++    +++   
Sbjct: 258 SKISLSDVATVELGAENYNMIGRFNGKPSAGVGIKLATGANALNTSKAVKKALDEMSPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PHGLTVVYPYDTTPFVKISIFEVVKTLAEAILLVFVVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFAILAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GG+       F++ +   ++++   ++ +   + + 
Sbjct: 436 GQIQGALVGIALVLSAVFVPMAFFGGATGAIYRQFSVTIVSAMILSVLVALILTPALCVT 495

Query: 823 IYD 825
           +  
Sbjct: 496 MLK 498



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 81/241 (33%), Gaps = 7/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S    +      + +   E+   +      G++       + +         L      +
Sbjct: 801  SAFMDVSKEPWIYGSPRLERYNGLPSMEIVGEAAPGKSTGDAMVLMEQLASQLPPGIGYD 860

Query: 656  IVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
              G      L       +  +S I + + +   ++ W      +  + L +   L   ++
Sbjct: 861  WTGMSYQERLSGNQAPALYALSLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALLATSI 920

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G++ ++     +LT IG S  + +++ +  +  M+         +    +    L   +
Sbjct: 921  RGLDNDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LIEATLDAAKMRLRPIL 978

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS+A  + V+P+ +    G     +    +  G++ A S +I+      + I     K 
Sbjct: 979  MTSLAFMLGVMPLVLSNGAGSGAQNAVGTGVLGGMIAATSLAIYFVPVFFVVIKRRFTKK 1038

Query: 831  A 831
            +
Sbjct: 1039 S 1039


>gi|238023817|ref|YP_002908049.1| hydrophobe/amphiphile efflux family protein [Burkholderia glumae
           BGR1]
 gi|237878482|gb|ACR30814.1| Hydrophobe/amphiphile efflux family protein [Burkholderia glumae
           BGR1]
          Length = 1061

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 151/548 (27%), Gaps = 33/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++           +  +P  +P + I                  
Sbjct: 10  RPIFAGVLSVLILLGGVIAMFM-----LPISEYPEVVPPSVI---------VKAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPIEEQINGVEDMLYMQSQANSDGNVTITVTFKLGTDPDKATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGVTTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   T   +       N      + G          Q 
Sbjct: 176 QVQLWGAGDYAMRVWLDPQKVAERGLTADDVVRSIREQNVQVAAGVIGASPSIPGTPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 +    +      
Sbjct: 236 SVNARGRLQTED-------------EFGNIVVKTAPDGAVTRLRDLGRVDLDASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +        L+          +          S   
Sbjct: 283 LLDNQPAVAMAINQSPGANSLQISDQVRATMEELKQDFPAGVEYRIVYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ +++I T +LL + G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIIGTFSLLLMFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIERGLSAREATYQAMREVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS F ++++  A+   +     ++   +             
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKGHDEQPDWLTRVMNRVLGGFFR 522

Query: 537 CIAIQFMR 544
                F R
Sbjct: 523 RFNAVFHR 530



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSLLSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGRTPFEAAVEASRLRLRPILMTSIAFIMGVVPLVLSTGAGAEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 95/285 (33%), Gaps = 14/285 (4%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V  +      +   L  +             + V       ++ +R              
Sbjct: 221 VIGASPSIPGTPLQLSVNARGRLQTEDEFGNIVVKTAPDGAVTRLRDLGRVDLDASEYGL 280

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
               +    V +           ++ + V+  + E+         E        + +R  
Sbjct: 281 RSLLDNQPAVAMAINQSPGANSLQISDQVRATMEELKQDFP-AGVEYRIVYDPTQFVRSS 339

Query: 670 IVGVIISAI-AMLIYIW----IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           I  V+ + + A+ + +         W  ++  +  + + I  T     +FG   N  ++ 
Sbjct: 340 IKAVVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIIGTFSLLLMFGYSINALSLF 399

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++  IG  V+D +VV + + +N+      +S R+   +++ E  G  +       ++V 
Sbjct: 400 GMVLAIGIVVDDAIVVVENVERNI---ERGLSAREATYQAMREVSGPII-AIALTLVAVF 455

Query: 785 PMAVWG----GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               +     G     FA+ +A   V++A +S+ ++  +   +  
Sbjct: 456 VPLAFMSGLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLK 500


>gi|134293445|ref|YP_001117181.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           vietnamiensis G4]
 gi|134136602|gb|ABO57716.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia vietnamiensis G4]
          Length = 1070

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 72/688 (10%), Positives = 186/688 (27%), Gaps = 48/688 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G             + ++P+  P               + +   
Sbjct: 7   KRPILAWVMAIVIMLVGAAAV-----TTLPVAQYPTIAPP-------------SVQVTAT 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L        +   S    Q  ITL+F      +    +V 
Sbjct: 49  YPGASADTVAATVTQVIEQKLSGIDNVLYMSSTSSSAGQATITLTFNPGTNPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  +         +++   +      ++++    I  Q  D +  
Sbjct: 109 NKVSQATPTLPQTVQEQGVQVAKASTSFLMIVALSSPGGTWNSVDLGNIIATQIEDPLSQ 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P +L      T+ ++      N        G     DS
Sbjct: 169 LNGVGDVTLFGAQ-HAMRIWLNPVKLHSFGLATSDVTTAITNQNVELSTGQVGGAPATDS 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     ++                +    +        R        +      
Sbjct: 228 QAINATIRSSSLLTTAD-------------QFANILLRVNSDGSRVLLKDVARVEVGGDS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L     +          +            A L+                    
Sbjct: 275 YETSSRLNGKPASALAIKLATGANALEAANAVRAKLAELQPQLPKDVAISYPYDTTPFVR 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+    + + ++ T  ++S++G ++ + S
Sbjct: 335 ISIEEVVKTLLEAVVLVFLVMYLFLQNVRATLIPTIVVPVALLGTFGVMSMIGFSINVLS 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYST-IFDSNITALIAT 474
           +  +VL IGL VD  I+V E +      +      +      +     I  + +   +  
Sbjct: 395 MFAMVLAIGLLVDDAIVVVENVERIMSEERLEPKEATRKAMGQITGALIGVTTVLTAVFI 454

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FF G      R F+IT+  ++L+S+  A+++  A+   +++   ++  +      +F
Sbjct: 455 PMAFFSGSTGAIYRQFSITIVSAMLLSVMLALTLTPALCATLLKRADVEHHEKRGFFGWF 514

Query: 533 LIP-------DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        ++  + A+     +        + LL+    +  +  +      V  
Sbjct: 515 NRCFAKGNAGYSSSLARVVAKPARYMLVYGAIAGIVALLYVTLPSSFLPDEDQGYFIVSI 574

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           + P      R+      +     ++  G K  +    +          +  +  K  +  
Sbjct: 575 SAPAGTPASRTLKTVEAVEQYVLKDEPGVKQVIAINGFSFNGQGQNNAIAFVTLKDWSLR 634

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673
             L + Q       +         I  +
Sbjct: 635 GSLDSAQAIIARASQHFAANRDARIFVL 662



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 89/246 (36%), Gaps = 10/246 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V          + S +      + L        +++     +     ++   +
Sbjct: 258 SRVLLKDVARVEVGGDSYETSSRLNGKPASALAIKLATGANALEAANAVRAKLAELQPQL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         R  I + +  ++ + + + + +++  +     L     + + + 
Sbjct: 318 PKDVAISYPYDTTPFVRISIEEVVKTLLEAVVLVFLVMYLFLQNVRATLIPTIVVPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  ++ G   N+ ++ A++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFGVMSMIGFSINVLSMFAMVLAIGLLVDDAIVVVENV--ERIMSEERLEPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +  G  +   +   +    +PMA + GS       F+I +   ++++   ++ +   + 
Sbjct: 436 GQITGALI--GVTTVLTAVFIPMAFFSGSTGAIYRQFSITIVSAMLLSVMLALTLTPALC 493

Query: 821 LFIYDW 826
             +   
Sbjct: 494 ATLLKR 499



 Score = 44.7 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 25/198 (12%), Positives = 64/198 (32%), Gaps = 9/198 (4%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            +    +PG S  +         +                  +   +      + +++  +
Sbjct: 848  ISAATRPGVSTGEAMNAVEQLARKLPPGFALEWTGQSYQEKQAGSQATTLYAISLVVVFL 907

Query: 679  AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
             +     +   W   L  +  + L +   L      G+  ++     +L  IG S  + +
Sbjct: 908  CLAG---LYESWSIPLAVVLVVPLGVLGALLAAHGRGLSNDIYFKVGLLATIGLSTKNAI 964

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ +  +    L        D + ++ +  L   + TS+A    VLP+ +    G     
Sbjct: 965  LIVEFAKD---LQAEGHGLVDAVLEAAHLRLRPILMTSLAFVFGVLPLVISTGAGAGARH 1021

Query: 796  SFAIPMAFGIVVAASSSI 813
            +    +  G++ A   +I
Sbjct: 1022 AIGTGVTGGMIAATVLAI 1039


>gi|209524394|ref|ZP_03272943.1| protein-export membrane protein SecF [Arthrospira maxima CS-328]
 gi|209495185|gb|EDZ95491.1| protein-export membrane protein SecF [Arthrospira maxima CS-328]
          Length = 330

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 151/318 (47%), Gaps = 23/318 (7%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNY--------GIDFKGGIQLGVLAN--- 586
           +     + R     IS    +  I  +     N         G+DF GG +L +  +   
Sbjct: 1   MTFSVTKRRSLWWMISAAVILAGIVAMLISWTNPDIGSPIRPGLDFVGGTRLQLELDCTV 60

Query: 587 -----RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                 P+++  VR  L++  +G  S Q  D +     R                 ++  
Sbjct: 61  PGNCDGPIEIDQVREVLQAQDLGSSSIQLLDKDPIQRDRQIVSVRTKNLNVDERTQLEAA 120

Query: 642 ITEIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           + E +          + VGP + R++   G+  ++++   + +Y+  RF++ +A+ A   
Sbjct: 121 LREAIGVFDPLATQIDTVGPTLGRQIFISGLQALLVAFAGITVYLTFRFQFDYAVFAFVA 180

Query: 700 LILDITKTLGFFALFGIEF----NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           L  D+  T+G F++FG+ F    +   + A+LT+IG+SVND VV+YDR+R+ +K      
Sbjct: 181 LFHDVFLTMGIFSIFGLVFGLEADTLFLVALLTIIGFSVNDTVVIYDRIREILKQMP-DA 239

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           S  +++D ++N+TL RS+ T++   + +  + ++GG  +  FA+ +  G +  + SSIFI
Sbjct: 240 STGEVVDNAVNQTLARSINTTVTTILPLFCIFLFGGETLKYFALTLIIGFIAGSYSSIFI 299

Query: 816 AAPILLFIYDWRAKNARI 833
           A+ +L +  D +A  + I
Sbjct: 300 ASTLLGWWRDRKASKSTI 317


>gi|157415354|ref|YP_001482610.1| preprotein translocase subunit SecD [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386318|gb|ABV52633.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 81116]
          Length = 526

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 289/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++  +   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSE---------RGAKINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 52  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIAKVENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + + +      I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------KGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTVAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS 218

Query: 236 ----------SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++ PV++ + +  G+++F + 
Sbjct: 219 YGLILVSDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGVVGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 459 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRR 526



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ ++I++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIVIFMMMYYGVV-GIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRASIEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      K+ 
Sbjct: 458 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSN 515


>gi|160876533|ref|YP_001555849.1| preprotein translocase subunit SecF [Shewanella baltica OS195]
 gi|160862055|gb|ABX50589.1| protein-export membrane protein SecF [Shewanella baltica OS195]
 gi|315268727|gb|ADT95580.1| protein-export membrane protein SecF [Shewanella baltica OS678]
          Length = 300

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 152/288 (52%), Gaps = 3/288 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I   + R+    ISIL  I S+ ++   G N+G+DF GG+   V  +R +  S ++ 
Sbjct: 1   MKNINLTKWRYVSSAISILLMITSLAIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQP 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +    ++S         +++R  Y    S    +    +++ +  +     + N+ +
Sbjct: 61  LLNAAYQQEVSVILASEPGRWVLR--YGDIKSADTEQSNVDIQQALAPLNSEVQVLNSSV 118

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP+I +EL  +G + ++++ + +L Y+  RF+W  A GA+  L+ D+   L FFAL  +
Sbjct: 119 VGPQIGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVVFVLAFFALTQM 178

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT +AAVL ++GYS+ND +++ DR+R+ +      ++ +++ +++I  T  R++ TS
Sbjct: 179 EFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPK-LAIQEINNQAIVATFSRTMVTS 237

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               ++V  + + GG  +  F+I M  GI+    SSI +   +   + 
Sbjct: 238 GTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLG 285


>gi|301057382|ref|ZP_07198499.1| putative ATP synthase F0, A subunit [delta proteobacterium NaphS2]
 gi|300448525|gb|EFK12173.1| putative ATP synthase F0, A subunit [delta proteobacterium NaphS2]
          Length = 1042

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 73/640 (11%), Positives = 177/640 (27%), Gaps = 36/640 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I   G L           + ++P   P                V    
Sbjct: 8   QRPRLAIVIAILITLSGALALF-----NIPVAQYPQISPPEIR---------VSAVYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++       +     +  ++++F            V   +Q
Sbjct: 54  SAEVVADSVAAPLEAEINGVEDMLYMSSTCSDNGSYSLSVTFEVGTDPNIAQVNVQNRVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               KL  +     +   T     + +     +     A+  S  +     D +   +  
Sbjct: 114 QAVPKLPTEVTDQGVSVRTRSSDILGVVTFFANDGGKDALFLSNYVSINVKDPLTRLKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      +   +    DP RL  L  T   +       N        G     D+   Q
Sbjct: 174 SEAYIFGALDYSMRIWMDPERLTSLGLTADDVITAIRQQNVQAATGSIGTAPTGDTQQVQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +  K  +              +T      +                 +          
Sbjct: 234 YTLRAKGRL-------------NRTDDFENIVIRTNPQGGVLRLKDVARVELGAQTYASK 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +              +  +   T++        L           +          + S
Sbjct: 281 SIFDGSPAVNMAIYRTSGANALETVKAVESELKRLSQRFPKGVQYQLSYDTTRYVQSAIS 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV+ V F+ +   +  L+   +I ++++   A+L  LG +    ++  +
Sbjct: 341 EIILALFVTFLLVVGVTFLFLQDWRATLIPTLTIPVSLVGCFAVLLALGFSANTLTLFAL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L IGL VD  I+V E ++    +       +      +  + I  + +  L   V + F
Sbjct: 401 ILSIGLVVDDAIVVVENVQRVMEEGALKPKEATIKAMGQVTAPIISTTLVMLAVFVPVGF 460

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDINPLSRFF 532
                G   R FA+T+  S+++S   A+++  A+   ++R  +       +         
Sbjct: 461 IPGITGQLYRQFAVTISTSVVLSSVCALTLSPALCATLLRANRPSVNRGPLAWFARLLGL 520

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +A      R   V + +   I        +             + ++  +  + S
Sbjct: 521 SRNGYVATSAWLTRRKWVVLCLFLMIFGGGWFMFNNRPASFLPNEDQGVFLINAQLPESS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +    E +Q      +   G  + +    +      ++ 
Sbjct: 581 SLARTNEVMQQVSKLLKETPGVNHVIAVSGFSLLSGSSEN 620



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 85/244 (34%), Gaps = 12/244 (4%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q               +   +    +++   + +E   K++++  P     
Sbjct: 266 DVARVELGAQTYASKSIFDGSPAVNMAIYRTSGANALETVKAVESELKRLSQRFPKGVQY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                  +  +  I + I+ + ++ + ++   ++    W   L    T+ + +       
Sbjct: 326 QLSYDTTRYVQSAISEIILALFVTFLLVVGVTFLFLQDWRATLIPTLTIPVSLVGCFAVL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINET 768
              G   N   + A++  IG  V+D +VV +   R+ +   L        +   K++ + 
Sbjct: 386 LALGFSANTLTLFALILSIGLVVDDAIVVVENVQRVMEEGALKPK-----EATIKAMGQV 440

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               + T++      +P+       G +   FA+ ++  +V+++  ++ ++  +   +  
Sbjct: 441 TAPIISTTLVMLAVFVPVGFIPGITGQLYRQFAVTISTSVVLSSVCALTLSPALCATLLR 500

Query: 826 WRAK 829
               
Sbjct: 501 ANRP 504



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 50/154 (32%), Gaps = 6/154 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            L  +     W   L  + ++ +     L    +  +  ++ A   ++ L+  +  + +++
Sbjct: 883  LFLVAQYESWTIPLPVLISISVAGLGALVGLWIAALALSIYAQIGMVLLVALASKNAILI 942

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
             +  +          S  +             + T+ +    VLPM +    G +   + 
Sbjct: 943  VEFSKTER---EQGSSIFEAAISGARMRFRAVLMTAFSFIFGVLPMVLATGAGANSRRAI 999

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               +  G++ A    IF+   +       R K  
Sbjct: 1000 GTTVFAGMLAATMVGIFLIPALYASFQSNREKLK 1033


>gi|126175449|ref|YP_001051598.1| preprotein translocase subunit SecF [Shewanella baltica OS155]
 gi|125998654|gb|ABN62729.1| protein-export membrane protein SecF [Shewanella baltica OS155]
          Length = 300

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 153/288 (53%), Gaps = 3/288 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I   + R+    ISIL  I S+ ++   G N+G+DF GG+   V  +R +  S ++ 
Sbjct: 1   MKNINLTKWRYVSSAISILLMITSLAIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQP 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +    ++S  +      +++R  Y    S    +    +++ +  +     + N+ +
Sbjct: 61  LLNAAYQQEVSVISASEPGRWVLR--YGDIKSADTEQSNVDIQQALAPLNSEVQVLNSSV 118

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP+I +EL  +G + ++++ + +L Y+  RF+W  A GA+  L+ D+   L FFAL  +
Sbjct: 119 VGPQIGQELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVVFVLAFFALTQM 178

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT +AAVL ++GYS+ND +++ DR+R+ +      ++ +++ +++I  T  R++ TS
Sbjct: 179 EFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPK-LAIQEINNQAIVATFSRTMVTS 237

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               ++V  + + GG  +  F+I M  GI+    SSI +   +   + 
Sbjct: 238 GTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLG 285


>gi|300774150|ref|ZP_07084018.1| multidrug efflux pump BpeF [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300758961|gb|EFK55789.1| multidrug efflux pump BpeF [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 1063

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 76/540 (14%), Positives = 164/540 (30%), Gaps = 41/540 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  +G+L        +  + +FPS  P               + +   
Sbjct: 7   RRPVLSIVISLIILFLGVLSLA-----KLPVTQFPSISPPK-------------VNITAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N  L +     L   L    G+   +     +    I + F         A  V 
Sbjct: 49  YPGANNELLIKSVVIPLERGLNGVPGMKYMTSDAGNDGEASIQVVFDLGTDPNVAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V +KL     +  +  T E+   ++      D   +             + ++  
Sbjct: 109 NRVSSVVNKLPPLVVREGVKITREEPNMLMYINLYSDDPKADQKFLFNYADINVMSELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P RL     ++ ++       +        G    + S
Sbjct: 169 VSGVGFADILGTREYAMRIWLKPDRLTAYNLSSDEVMEALNQQSLEASPGKTGESSGKRS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++     +                     I   + G          ++    ++
Sbjct: 229 QSFEYILKYPGRFNNE-------------TDYGNIILKAKSGGEFVRLKDVADVEFGSSM 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA-GSLPIKLNIVEERNVGAD 355
                 L                + +  I+    L   L+           +        
Sbjct: 276 YDIYSTLNGKPSAAITVKQSYGSNASDVIKNVKELMTDLQKNNFPKGMHYDISYDVSRFL 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV IV+F+ +   +  L+   ++ ++++ T A++S  G TL + 
Sbjct: 336 DASIEKVVHTLFEAFILVAIVVFLFLGDWRSTLIPALAVPVSLVGTFAIMSAFGITLNMI 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           S+  +V+ IG+ VD  I+V E +  +  +   S   + +         I    +      
Sbjct: 396 SLFALVMAIGVVVDDAIVVIEAVHAKMEEKNLSPLKATEEAMHEISGAIIAITLVMASVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F  G      R F+ITM  SI++S   A+++  A+   I++    K+     +S+F
Sbjct: 456 IPVAFMSGPVGVFYRQFSITMVSSIMLSGVAALTLTPALCALILKNNHGKAKKKTWISKF 515



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/246 (17%), Positives = 92/246 (37%), Gaps = 7/246 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V      S      S  N        V+  Y    S     V E++        P    
Sbjct: 265 DVADVEFGSSMYDIYSTLNGKPSAAITVKQSYGSNASDVIKNVKELMTDLQKNNFPKGMH 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
            +      +     I K +  +  + I + I +++    W   L     + + +  T   
Sbjct: 325 YDISYDVSRFLDASIEKVVHTLFEAFILVAIVVFLFLGDWRSTLIPALAVPVSLVGTFAI 384

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            + FGI  N+ ++ A++  IG  V+D +VV + +    K+   ++S     +++++E  G
Sbjct: 385 MSAFGITLNMISLFALVMAIGVVVDDAIVVIEAVH--AKMEEKNLSPLKATEEAMHEISG 442

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDW 826
             +  ++      +P+A   G V      F+I M   I+++  +++ +   +  L + + 
Sbjct: 443 AIIAITLVMASVFIPVAFMSGPVGVFYRQFSITMVSSIMLSGVAALTLTPALCALILKNN 502

Query: 827 RAKNAR 832
             K  +
Sbjct: 503 HGKAKK 508



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 76/249 (30%), Gaps = 9/249 (3%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V     +    S  +               +    +   S A         K I E+  
Sbjct: 790  YVKNDKDQMVPYSDFMHLEKVYGLSEITRHNMYNSAEVSGSPAPGYSSGQAIKAIQEVAN 849

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWI---RFKWYFALGAITTLILD 703
                +   I    IS++ + +G   + I  I +  +Y+ +      +   L  I +L   
Sbjct: 850  SKLPRGFGIDWAGISKDEVSRGNEAIYIFLICLGFVYLILSAQYESFILPLPVILSLPTG 909

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I        L G+E N+ A  A++ LIG    + V++ +      K     IS      +
Sbjct: 910  IFGAFLCLKLLGLENNIYAQVAMVMLIGLLGKNAVLIVE--FAVQKKAEEGISVVKAAIE 967

Query: 764  SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    ++P+    G   +   +     A G+ +     + I   + 
Sbjct: 968  GATIRFRPILMTSFAFIAGLIPLVMATGPGALGNRTIGTAAAGGMFIGTIFGLLIIPGLY 1027

Query: 821  LFIYDWRAK 829
                    +
Sbjct: 1028 YIFGTIAER 1036


>gi|254038689|ref|ZP_04872745.1| multidrug transporter [Escherichia sp. 1_1_43]
 gi|226839195|gb|EEH71218.1| multidrug transporter [Escherichia sp. 1_1_43]
          Length = 1037

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANAQDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 81/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        ++   +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANAQDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|116254012|ref|YP_769850.1| Acr/RND family efflux transmembrane transporter [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258660|emb|CAK09764.1| putative Acr/RND family efflux transmembrane transporter [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1056

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 76/693 (10%), Positives = 181/693 (26%), Gaps = 45/693 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  +   IG +        Q  + ++P+ +P               + +    
Sbjct: 9   RPVLANVLALVFVLIGAVALF-----QLPIAQYPNVVPPT-------------VQVTTRF 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +     +         +    +T++FA     +     V  
Sbjct: 51  PGASAQTLVDTVALPIEQQVNGVQDMLYMQSTSASDGTYSLTVTFAIGTDPDQAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L    +   + T  +    +             ++  S   +    +++   
Sbjct: 111 RVAIAMSSLPEAVQLQGVTTQKKSTAILGFVTLTSPDSRYDSLFLSNYAVINLQNELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+ L+    T   +       +        G+  +    
Sbjct: 171 PGVGNVTVFGAGQYAMRIWMDPNLLQARGLTPQDVISVVQQQSQEVAAGQIGIPPVPKGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +     ++           +   ++ ++       G R         +       
Sbjct: 231 IFQYTLNVNGRLN-----------EAADYENIIVKVESGEGGRVTRIRDIGRVELGAQTY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +               + +     +  G     L           V          
Sbjct: 280 SQSFMQNGRPAAGIGIFQLPEANAIAVAQEVGAKMQELSKSFPQGLEYHVPFDTTKFVKA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+ + +   +  LV   ++ + +I   A ++ LG T+ L ++
Sbjct: 340 SIDEVYVTLIEAGVLVLIVILVFLQDWRAMLVPATTVPVTIIGAFAAMAALGFTVNLSTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIAT 474
             IVL IG+ VD  I++ E +        S   + +            I    +   I  
Sbjct: 400 FAIVLAIGIVVDDAIVIVEGVARHIEAGLSGRQAAEKAMEELLGPVIGITLVLMAVFIPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   R FA+ +  + LIS   A+++        +R              F  +
Sbjct: 460 AFLPGLTGQLYRQFALVIAATALISAINAVTLKPTQCALWLRPPVAPEKRNVFYRGFNRV 519

Query: 535 PDCIAIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            D     +        R  GV       +  + +     L             +++ +  
Sbjct: 520 YDKGERGYAGLIGSMTRHAGVMAIAAIVLIGVAVWGLTRLPTAFLPIEDQGYVLISAQLP 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D +        ++      +   G    L        D+ A  +   +    + +     
Sbjct: 580 DGASKERTDAVMEEVGKIAETTPGVDQVLTISGISVLDNNASLQNAGVAYVVLKDWDERG 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
             +  +++        +   +  V+ +   +++
Sbjct: 640 KQKGQDLLSIYQH---LNGALQNVLAAKTLVVV 669



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 9/166 (5%)

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G +  + +   +L+Y  +      W   L  I  + L +  T+      G+  NL     
Sbjct: 874  GQIYFVFALAMLLVYFVLAGQYESWILPLAVILAVPLALLGTVAALTAAGVANNLYTQIG 933

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LI  +  + +++ +  R+        +   D   ++        + TS A  + VLP
Sbjct: 934  LILLIALASKNAILIVEYAREKRAE---GMEILDAAVEAARLRFRPILMTSFAFILGVLP 990

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +    G S   S  I +  G++ +   ++       + +     
Sbjct: 991  LVLATGAGASARKSIGISVFSGMIASTCLAVLFVPSFYVLLQRLEE 1036



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 76/188 (40%), Gaps = 9/188 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 ++ + K   + +      +T         E+    I   ++  I +L+++    
Sbjct: 308 QEVGAKMQELSKSFPQGLEYHVPFDTTKFVKASIDEVYVTLIEAGVLVLIVILVFLQ--- 364

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       A  G   NL+ + A++  IG  V+D +V+ + +    
Sbjct: 365 DWRAMLVPATTVPVTIIGAFAAMAALGFTVNLSTLFAIVLAIGIVVDDAIVIVEGV---A 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +     +S R   +K++ E LG  +  ++      +P A      G +   FA+ +A   
Sbjct: 422 RHIEAGLSGRQAAEKAMEELLGPVIGITLVLMAVFIPAAFLPGLTGQLYRQFALVIAATA 481

Query: 806 VVAASSSI 813
           +++A +++
Sbjct: 482 LISAINAV 489


>gi|170682414|ref|YP_001745783.1| multidrug resistance protein MdtF [Escherichia coli SMS-3-5]
 gi|170520132|gb|ACB18310.1| multidrug resistance protein MdtF [Escherichia coli SMS-3-5]
          Length = 1037

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFS---RAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMRQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 RQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|323966082|gb|EGB61521.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli M863]
 gi|327251157|gb|EGE62850.1| inner membrane protein [Escherichia coli STEC_7v]
          Length = 1037

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEGK--TPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|212693691|ref|ZP_03301819.1| hypothetical protein BACDOR_03211 [Bacteroides dorei DSM 17855]
 gi|265755884|ref|ZP_06090351.1| multidrug efflux membrane fusion protein [Bacteroides sp.
           3_1_33FAA]
 gi|212663750|gb|EEB24324.1| hypothetical protein BACDOR_03211 [Bacteroides dorei DSM 17855]
 gi|263233962|gb|EEZ19563.1| multidrug efflux membrane fusion protein [Bacteroides sp.
           3_1_33FAA]
          Length = 1011

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 81/626 (12%), Positives = 176/626 (28%), Gaps = 44/626 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   GL+           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGLI-----GYNTLGVREYPSVDNPII---------SVSCSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q +IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQCRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVAIQSDS--RSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+++     T   +                             
Sbjct: 173 SVSIWGEKRYSMRLWLDPTKMAGYGITPVDVKNAITNE--------------------NI 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                     T K   +I   E+G R              A +    
Sbjct: 213 ELPSGSIEGNTVELTLRTMGQMHTAKEFNNIILKEVGGRVVRFSDIGYAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S   
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  L+    I +++I    ++ + G ++ + ++  +V
Sbjct: 333 VKSTVYEAFVLVIIIIFLFLRDWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +    F +   G    +  +  + IT +   + + F  
Sbjct: 393 LSVGLVVDDAIVMTENIYIRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVFME 452

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G +    R F+  +  S++IS F A++    +   ++  ++ +         FF   + I
Sbjct: 453 GTSGRLFREFSFVVAGSVIISSFAALTFTPMLATKLLIKREKQGWFYQKTEPFFEGMNRI 512

Query: 539 AIQ----FMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F++ R W +    I+     +           ++ +  I +   A        
Sbjct: 513 YARSLNAFLKRRIWAIPVTVIMLIAIGVLWGQIPAEMAPMEDRSQISINTRAAEGASYEY 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLV 619
           +R   E +     S           V
Sbjct: 573 IRDYTEDINNLVDSIIPDAESVTARV 598



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 73/206 (35%), Gaps = 9/206 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A  + +E +KK + + V  S   +          E+        ++  I + +++    
Sbjct: 297 DAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASIDEVKSTVYEAFVLVIIIIFLFL---R 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +        + G   N+  + AV+  +G  V+D +V+ + +    
Sbjct: 354 DWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLAVVLSVGLVVDDAIVMTENI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 +   +   +   E     + T++      LP+    G+       F+  +A  +
Sbjct: 411 IRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVFMEGTSGRLFREFSFVVAGSV 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           ++++ +++     +   +   R K  
Sbjct: 471 IISSFAALTFTPMLATKLLIKREKQG 496



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/526 (12%), Positives = 149/526 (28%), Gaps = 42/526 (7%)

Query: 1    MRNNPWLV-ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
            ++   W + +   M+  IG+L        Q   +  P      +IS+      G+     
Sbjct: 521  LKRRIWAIPVTVIMLIAIGVL------WGQIPAEMAPMEDRS-QISINTRAAEGASYEYI 573

Query: 60   VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             D  + +N  +     +  S           +      I ++  D + ++    +V   +
Sbjct: 574  RDYTEDINNLVDSIIPDAES-------VTARVSSGSGNIRITLKDIKDRDYTQMEVAERI 626

Query: 120  QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                              T  +      S     +           +    I+++     
Sbjct: 627  SQAIR-----------NKTKARAFVQQQSSFGGRRGSMPVQYVLQAVS---IEKLEKVLP 672

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        Q+           L  ++ +M  +         G            G 
Sbjct: 673  DFLSKVYDNPTFQMADVD-------LKFSSPEMRVNINRDKAGTMGATVRDIAETLQYGL 725

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                     ++G            + + P    S      +       + +    +V   
Sbjct: 726  SGQRMGYFYMNGKQYEILGQINRQQRNTPANIKSIYIRSDKGEMIQLDNLVEFVESVAPP 785

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                    I+    +  A ++   TI         + A +L          +      S 
Sbjct: 786  KLYHYNRFISA---TVSAGLADGKTIGQGLEEMDKIAAQTLDETFRTALSGDSKDYRESS 842

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            S       +   L+ ++L       K   +   ++ L +   L  +   G T+ + S  G
Sbjct: 843  SSLMFAFILALILIYLILAAQFESFKDPFIIMLTVPLAIAGALIFMYAGGITMNIFSQIG 902

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            I++ IGL   + IL+ E   ++    ++   ++     +    I  ++ + ++  + L F
Sbjct: 903  IIMLIGLVAKNGILIVEFANQKQEGGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAF 962

Query: 480  FGGGAVRG---FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G            +   +L+S F  + IV A+  +I   + +K+
Sbjct: 963  ATGEGANQRIAMGTAVVGGMLVSTFLTMYIVPAIYSYISTNRNVKT 1008



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ L I   L F    GI  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPFIIMLTVPLAIAGALIFMYAGGITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +      +    I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEGGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAFATGEGANQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
            +V+   +++I   I  +I   R
Sbjct: 983  LVSTFLTMYIVPAIYSYISTNR 1004


>gi|15803800|ref|NP_289834.1| N-terminal fragment of integral transmembrane protein involved with
           acridine resistance [Escherichia coli O157:H7 EDL933]
 gi|217326796|ref|ZP_03442879.1| acriflavine resistance protein F [Escherichia coli O157:H7 str.
           TW14588]
 gi|261255127|ref|ZP_05947660.1| multidrug efflux system protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12517896|gb|AAG58394.1|AE005554_5 N-terminal fragment of integral transmembrane protein involved with
           acridine resistance [Escherichia coli O157:H7 str.
           EDL933]
 gi|13363611|dbj|BAB37561.1| putative integral transmembrane protein [Escherichia coli O157:H7
           str. Sakai]
 gi|209747510|gb|ACI72062.1| putative integral transmembrane protein [Escherichia coli]
 gi|217319163|gb|EEC27588.1| acriflavine resistance protein F [Escherichia coli O157:H7 str.
           TW14588]
 gi|320189613|gb|EFW64272.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. EC1212]
 gi|326347530|gb|EGD71255.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. 1044]
          Length = 628

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 63/522 (12%), Positives = 148/522 (28%), Gaps = 41/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
             S             +    D   L +   T   +     + N        G       
Sbjct: 169 LNSVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNAQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL 496



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|104782038|ref|YP_608536.1| multidrug/solvent RND transporter, AcrB-like [Pseudomonas
           entomophila L48]
 gi|95111025|emb|CAK15745.1| putative multidrug/solvent RND transporter, AcrB-like [Pseudomonas
           entomophila L48]
          Length = 1040

 Score =  191 bits (483), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 86/687 (12%), Positives = 190/687 (27%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G L       PQ  + ++P   P               + +    
Sbjct: 8   RPVFAWVVALFILLVGALAI-----PQLPVAQYPDVAPP-------------QVEIYAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  + +     +   L                   IT SF      +     V   
Sbjct: 50  PGASAATMDESVVSIIEQELNGADNLLYFESQSSLGNATITASFQPGTNPDMAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ + S+L     +  L         ++L+    +      I  S  + R  +++I   +
Sbjct: 110 LKVIESRLPRPVTQQGLQVEKVSTGFLLLATLTSEDGSLDEIALSDILARNVMNEIRRIK 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP++L     T   ++      N        G    R +  
Sbjct: 170 GVGKAQLYGS-ERAMRIWIDPAKLVGFKLTPNDVAEAIAAQNAQVAPGSIGDLPSRPTQE 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K ++S                +    +                 +        
Sbjct: 229 ITANVVVKGQLS-------------TPEEFAAIVLRANADGSTVTVGDVARVEIGAQEYQ 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G  L     +          +   T          L           +          S
Sbjct: 276 YGTRLNGKATSAFSVKLSPGANAMETAALVKQKLDELSRYFPAGVKYDIPYDTSPFVKVS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV  V+F+ +   ++ L+    + + ++ T A+++ LG ++ + ++ 
Sbjct: 336 IKQVISTLVEAMVLVFAVMFLFLQNFRYTLIPTLVVPVALMGTFAVMNALGFSINVLTLF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +      +      +    I    +  +   + +
Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMAEEGLPPKEATRKAMGQISGAIVGITLVLVAVFLPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--KKMKSIDINPLSRFF 532
            F  G      + F+++M +SIL S F A+S+  A+   +++   K            F 
Sbjct: 456 AFMQGSVGVIYQQFSVSMAVSILFSAFLALSLTPALCATLLKPLEKGEHHERKGFFGWFN 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG-----IDFKGGIQLGVLANR 587
              + ++  + R     +  S  + +    L+   G  +                +   +
Sbjct: 516 RRFEGMSNGYQRWVTHALARSGRYLLVYAALVAVLGYGFSQLPTAFLPTEDQGYTITDIQ 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     +E  +  +       G  N  + L +    S     +     K  +E   
Sbjct: 576 LPPGASQARTIEVARQIEAHNTEEPGVANTTLILGFSFSGSGQNAALAFTTLKDWSERGA 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             + Q+          +L       V+
Sbjct: 636 DDSAQSIADRATMAFTQLKDAIAYAVL 662



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 87/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q      +      +          +++    +++    +++   
Sbjct: 257 STVTVGDVARVEIGAQEYQYGTRLNGKATSAFSVKLSPGANAMETAALVKQKLDELSRYF 316

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I++ I  ++ + + +   +++  + + + L     + + + 
Sbjct: 317 PAGVKYDIPYDTSPFVKVSIKQVISTLVEAMVLVFAVMFLFLQNFRYTLIPTLVVPVALM 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 377 GTFAVMNALGFSINVLTLFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPKEATRKAM 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      LPMA   G   VI   F++ MA  I+ +A  ++ +   +   
Sbjct: 435 GQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSVSMAVSILFSAFLALSLTPALCAT 494

Query: 823 IYD 825
           +  
Sbjct: 495 LLK 497



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 61/146 (41%), Gaps = 5/146 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W      +  + L +   +    L G+  ++     +
Sbjct: 866  QAPLLMALSLLVVFLCLAALYESWSIPTAVLLVVPLGVLGAVLAVTLRGLPNDVFFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG S  + +++ +  +    L        D   ++    L   V TS+A  + V+P+
Sbjct: 926  ITLIGLSAKNAILIIEFAKD---LVDQGHDAVDAAIQAARLRLRPIVMTSLAFILGVVPL 982

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSS 812
            A+  G+   S    +  G++    S+
Sbjct: 983  AIASGASSAS-QQAIGTGVIGGMLSA 1007


>gi|294146581|ref|YP_003559247.1| putative multidrug efflux pump [Sphingobium japonicum UT26S]
 gi|292676998|dbj|BAI98515.1| putative multidrug efflux pump [Sphingobium japonicum UT26S]
          Length = 1061

 Score =  191 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 71/599 (11%), Positives = 162/599 (27%), Gaps = 39/599 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           + ++P  +P               + +    
Sbjct: 10  RPIFAAVIAVIITVVGALA-----FVGLPVSQYPDIVPPT-------------VTVSAQY 51

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +     +   S +   +    IT++F      +     V  
Sbjct: 52  PGASAETVASTVAAPIEQEINGVDNMLYQSSQSTGDGKVTITVTFKVGTDLDAAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +VT       +++               S   + Q  D++   
Sbjct: 112 RVAVAVPRLPEEVQRLGVVTRKTTPEFLMVVNLQSPDGTFDRNYISNYALTQVRDRLARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP R   L  T  ++       N        G       +
Sbjct: 172 DGVGDVQLFGSRDYAMRIWIDPDRAAALDLTAGEIVQALRAQNVQVSAGSIGQPPYDRGE 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  VE +  ++             +  +    +   +   R+        +       
Sbjct: 232 AFQLGVEMQGRLT-------------EPQQFADIVVRTDADGRQVRVGDVARVELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L+           +   +     E        L           V          
Sbjct: 279 GINTYLSNKPTVVIATMQRPGSNALDAAEKVKAEMEQLSRRFPKGLEYSVIYNPTEFISQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+ + +   +  ++   +I +++I T A+L+ LG +L   S+
Sbjct: 339 SIDAVYQTLFEAVILVVIVILVFLQNWRAAVIPIIAIPVSLIGTAAILAGLGYSLNNLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E +        +   +          A   I        + T
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIEHGMTPLEAARTSMDEVSTALVAIVLVLCAVFVPT 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           + +    G   + FA+T+  + +IS+  ++++  A    +++ +       N      + 
Sbjct: 459 LFITGISGAFYQQFAVTISTATIISLILSLTLSPAAAALLLKSRHDGHALRNAPRWRRIA 518

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                           G + L                G+         V     +    
Sbjct: 519 AQAADRFNRGFDRLSAGYARLTRFLVARPKKMLLTYSGLIAATIALFWVTPGGFIPAQD 577



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 57/132 (43%), Gaps = 8/132 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  A+  I  + + +  T    A  G   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRAAVIPIIAIPVSLIGTAAILAGLGYSLNNLSLFGLVLAIGIVVDDAIVVVENVERNI- 423

Query: 750 LYTTSISFRDLIDKSINETLGR--SVYTSMAAFISVLPMAVWG--GSVIGSFAIPMAFGI 805
                ++  +    S++E      ++   + A   V  + + G  G+    FA+ ++   
Sbjct: 424 --EHGMTPLEAARTSMDEVSTALVAIVLVLCAVF-VPTLFITGISGAFYQQFAVTISTAT 480

Query: 806 VVAASSSIFIAA 817
           +++   S+ ++ 
Sbjct: 481 IISLILSLTLSP 492


>gi|158424929|ref|YP_001526221.1| hydrophobe/amphiphile efflux-1 [Azorhizobium caulinodans ORS 571]
 gi|158331818|dbj|BAF89303.1| hydrophobe/amphiphile efflux-1 [Azorhizobium caulinodans ORS 571]
          Length = 1069

 Score =  191 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 70/666 (10%), Positives = 180/666 (27%), Gaps = 42/666 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L      IG +  L     +  + ++P+ +P               + + V+ 
Sbjct: 9   RPVLANVLALFFVLIGAVCVL-----RLPVAQYPNIVPPT-------------VTVSVNY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117
                  L       +   +   EG+              + ++FA           V  
Sbjct: 51  PGASAKTLVDTVALPIEQQVNGVEGMLYMQSWSASDGTYTLVVTFAIGTDPNMAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L    ++  +    +    +              +  S   I    +++   
Sbjct: 111 RVSIALASLPQSVQQQGVTVLQKGTSILEFVALTSPTGQYDGLYLSNYAIINIQNELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP  L+    T + +       +        G+    +  
Sbjct: 171 PGVGNVVVFGAGEYAMRVWLDPDHLQAYGLTPSDVINAIQGQSQEVTAGQTGMPPAPNGT 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY V  K  ++           D   ++ ++    ++ G +         +       
Sbjct: 231 SFQYTVNIKGRLN-----------DVPDYENIIVKVNNDNGGQIVRVRDVGRVELGAQSY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     ++       L+          +          
Sbjct: 280 SKTFTLDNKPATGIAIFQLPSANALDVAKSVKAKMEDLKTSFPQGVAYEIPFDTTLFVTA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVL+V+ + +   +  LV   ++ + +I   A ++ +G T+ L ++
Sbjct: 340 SIDEVYKTLYEAGILVLVVIIVFLQDWRATLVPATTVPVTIIGAFAAMAAMGFTINLSTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIAT 474
             ++L IG+ VD  I++ E +     +      + +      +     I    ++  +  
Sbjct: 400 FALILAIGIVVDDAIVIVEGVARHIEEGMPGRPAAEKAMDELFGPVIGITLVLMSVFLPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   + FA+ +  + LIS   A ++        +R              F  +
Sbjct: 460 SFIPGLTGQMFKQFALVIAATALISAINAATLKPTQCALWLRPPTPPEKRNAFYRGFNAV 519

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG-----VLANRPV 589
            +     +       V  S L  + ++ L+   G          + +      V++ +  
Sbjct: 520 YNKCEHWYAGLISRMVHHSALMVVGALILIGIAGYGITRVPTAFLPIEDQGYFVISVQLP 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D +      + +       Q   G  N +        D+ +      ++   +       
Sbjct: 580 DGASTERTTKVVANASEIAQKIPGVANVIAITGISVLDNNSSLSNAGVLYVTLDPWGARE 639

Query: 650 TIQNTE 655
             +  +
Sbjct: 640 KQKGED 645



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 73/225 (32%), Gaps = 15/225 (6%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                +V    +   S     ++E + K                   ++  ++        
Sbjct: 825  PTATVVGTNARGFSSGQALDIMEQIAKATLPQGMGFEWTAMSYQEKQVGSQMY------F 878

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +     +L+Y+ +      W   L  I  + L +  T+G     G+  NL     ++ LI
Sbjct: 879  VFGLAILLVYMVLAGQYESWIQPLSVILAVPLALLGTVGALLGLGVANNLYTQIGLVLLI 938

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
              +  + +++ +  R+        +   D   ++        + TS A  + VLP+    
Sbjct: 939  ALASKNAILIVEYAREKRAE---GMDIMDAAVEAARLRFRPILMTSFAFILGVLPLVFAT 995

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G +   S  I +  G++ +   ++         +  +  K  +
Sbjct: 996  GAGANSRKSIGIAVVSGMLASTCLAVLFVPSFYTVLQRFEEKFLK 1040



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 73/183 (39%), Gaps = 9/183 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            +    +E +K    + V      +T +       E+ +      I+  + +++++    
Sbjct: 308 KSVKAKMEDLKTSFPQGVAYEIPFDTTLFVTASIDEVYKTLYEAGILVLVVIIVFLQ--- 364

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       A  G   NL+ + A++  IG  V+D +V+ + +    
Sbjct: 365 DWRATLVPATTVPVTIIGAFAAMAAMGFTINLSTLFALILAIGIVVDDAIVIVEGV---A 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
           +     +  R   +K+++E  G  +  ++      LP +      G +   FA+ +A   
Sbjct: 422 RHIEEGMPGRPAAEKAMDELFGPVIGITLVLMSVFLPASFIPGLTGQMFKQFALVIAATA 481

Query: 806 VVA 808
           +++
Sbjct: 482 LIS 484


>gi|256025761|ref|ZP_05439626.1| multidrug transporter, RpoS-dependent [Escherichia sp. 4_1_40B]
          Length = 1037

 Score =  191 bits (483), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKNTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|182439813|ref|YP_001827532.1| preprotein translocase subunit SecF [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326780477|ref|ZP_08239742.1| protein-export membrane protein SecF [Streptomyces cf. griseus
           XylebKG-1]
 gi|178468329|dbj|BAG22849.1| putative protein-export membrane protein SecF [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326660810|gb|EGE45656.1| protein-export membrane protein SecF [Streptomyces cf. griseus
           XylebKG-1]
          Length = 362

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 79/301 (26%), Positives = 140/301 (46%), Gaps = 13/301 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+R R    GISIL +I +I  +   GL  GI+FKGG          +  +       
Sbjct: 18  YDFIRNRKIWYGISILITITAIIGVAVGGLRMGIEFKGGAVFTTDTKAQISTAQATDVAT 77

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                    Q         +R+Q    D+     + E +  ++            ++VGP
Sbjct: 78  EASGHMAIVQELGNGG---LRIQITEVDTAKANEIKETLSDELGIPANDINA---DLVGP 131

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++  K   G+ +  + ++IY+ I F+W  A+ A+  LI DIT T+G +AL G E  
Sbjct: 132 SWGEQIANKAWTGLGVFMVLVVIYLAIAFEWRMAVAALIALIHDITITVGVYALVGFEVT 191

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ ++SIN TL RS+ T++
Sbjct: 192 PGTVIGLLTILGYSLYDTVVVFDSLKEGQKDITKQTRFTYSEIANRSINSTLVRSINTTV 251

Query: 778 AAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A + V  +       +G  ++   ++ +  G+   A SSIFIA P++  + +   +   
Sbjct: 252 VALLPVAGLLFIGGGVFGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLKERDPQMKA 311

Query: 833 I 833
           +
Sbjct: 312 L 312


>gi|325298790|ref|YP_004258707.1| acriflavin resistance protein [Bacteroides salanitronis DSM 18170]
 gi|324318343|gb|ADY36234.1| acriflavin resistance protein [Bacteroides salanitronis DSM 18170]
          Length = 1010

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 194/689 (28%), Gaps = 57/689 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L  +I   GL+           +  +PS                  +     
Sbjct: 9   RRPVLATVLTIIILLFGLI-----GYTTLGVREYPSVDNPI-----------ISVTCSYS 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    ++  + +          +  Q++IT+ F  S   E  A+ V   +
Sbjct: 53  GANADVIENQITEPLEQNINGIPGIRSLSSVSQTGQSRITVEFELSVDLETAANDVRDKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  D     +         I++     +      +E S        +Q+     
Sbjct: 113 SRAQRYLPRDCDPPTVSKADADASPILMVAIQSNN--RSLLELSEIADLTVKEQLQTISD 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP ++     T   +                        D  
Sbjct: 171 VSSVSIWGEKRYSMRLWLDPVKMAGYGVTPVDVKNAM--------------------DNE 210

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                     T     ++   E+G +              A +  
Sbjct: 211 NVELPSGSIEGNTVELTLRTMGQMHTADEFNNVVIKEVGGQVIRLSDIGYAELGAADIKS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +    +   +   +   +     +        +               N      S 
Sbjct: 271 YMKMNGVPMVGVVVIPQPGANHIEIADAVYERMKQMEKDLPDDVSYTYGFDNTRFIRASI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  + T      LV++++F+ +   +  L+    I +++I    ++ + G ++ + ++  
Sbjct: 331 AEVESTVYEAFFLVIVIIFLFLRDWRVTLIPIIVIPVSLIGAFFIMYVAGFSINVLTMLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I++ E I     +    F +   G    +  +  + IT +   + + F
Sbjct: 391 VVLSVGLVVDDAIVMTENIYIRIERGMEPFEAGIEGAKEIFFAVVSTTITLVAVFLPIVF 450

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R F+  +  S+LIS F A++    +   +++ +K +S        FF   +
Sbjct: 451 MEGTSGRLFREFSFVVAGSVLISAFAALTFTPMLATKLLKKRKRQSWFYRKTEPFFEGMN 510

Query: 537 CIAIQ----FMRARFWGVGISI-LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
               +    F++ R+W +  +     +  +           ++ +  I +          
Sbjct: 511 YWYARGLSAFLKRRYWAIIFTAVTLVLIGVLWTHIPAEMAPLEDRSKITINTRGAEGASY 570

Query: 592 SVVRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
             +R   E + +   S              G  N  + L+       +Q  V E + + I
Sbjct: 571 EYIRDYTEDINLLVDSLIPDAEAVTARVSSGSGNIQITLKDINERDYSQMEVAEQLSQAI 630

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                       +         +  + ++
Sbjct: 631 KTKTKARAFVQQQSSFGGRRSSMPVQYVL 659



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 88/282 (31%), Gaps = 6/282 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI  +   + L     ++   +F   +   V         +  + L +  I      N  
Sbjct: 218 SIEGNTVELTLRTMGQMHTADEFNNVVIKEVGGQVIRLSDIGYAELGAADIKSYMKMNGV 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +V  Q           V E +K+   ++    +          I   +       
Sbjct: 278 PMVGVVVIPQPGANHIEIADAVYERMKQMEKDLPDDVSYTYGFDNTRFIRASIAEVESTV 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + ++I       W   L  I  + + +        + G   N+  + AV+  +G 
Sbjct: 338 YEAFFLVIVIIFLFLRDWRVTLIPIIVIPVSLIGAFFIMYVAGFSINVLTMLAVVLSVGL 397

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +          +   +   +   E     V T++      LP+    G+
Sbjct: 398 VVDDAIVMTENI---YIRIERGMEPFEAGIEGAKEIFFAVVSTTITLVAVFLPIVFMEGT 454

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  F+  +A  ++++A +++     +   +   R + +
Sbjct: 455 SGRLFREFSFVVAGSVLISAFAALTFTPMLATKLLKKRKRQS 496



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 6/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALIFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS+A  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMQAIRDAALQRLRPILMTSVATVLGLIPLAFATGEGANQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            +V+   ++FI   I  +I   R K   +
Sbjct: 983  LVSTFLTMFIVPAIYSYISTNRNKTKNV 1010


>gi|300929735|ref|ZP_07145190.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           187-1]
 gi|300462353|gb|EFK25846.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           187-1]
          Length = 1037

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|299769031|ref|YP_003731057.1| Multidrug resistance protein mexB (Multidrug-efflux transporter
           mexB) [Acinetobacter sp. DR1]
 gi|298699119|gb|ADI89684.1| Multidrug resistance protein mexB (Multidrug-efflux transporter
           mexB) [Acinetobacter sp. DR1]
          Length = 1031

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 82/658 (12%), Positives = 198/658 (30%), Gaps = 48/658 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   L        ++R+P   P               + +   
Sbjct: 8   QRPIFASVLAIIVMAFGIFSVL-----NLPVERYPDIAPPK-------------ITVSAS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSTSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVVGLYDSTGKAGNIELSDYLTTHVVDNLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGESDVFGSQ-YAMRIWLNPDKLKQYNLMPSDVASAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKSNQTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLIEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  +VL IGL VD  I+V E +     +        +++     + + I  + +   +  
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLTPKEAAIESMGEISGALIGITLVLTAVFI 455

Query: 475 VVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G  G   R F+IT+  ++ +S+  A+ +  A+   I++        +     F 
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLVVALVLTPALCALILKPNPQ---PMRWAVWFN 512

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG----VLANRP 588
              D +  Q+++     +  S    +  + L+    L Y     G I       +     
Sbjct: 513 QKIDQLKNQYIKIVQTSIDYSKSVVVIFVALIAVFALFYSGLKSGFIPKEDQGILSVQIK 572

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +  S   S  + +      +     +KN  + L     ++    + L      +    
Sbjct: 573 LVDSAPISQSQKIGEQVRQYFLTQEDKNVDLVLIRYGRNNSGTGQNLAQGFIALKPWD 630



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 82/199 (41%), Gaps = 8/199 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  I  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLIEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   ++ ++   +S+ E  G  +  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLTPKEAAIESMGEISGALIGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   + ++   ++ +   +
Sbjct: 475 LVAAMALSLVVALVLTPAL 493



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 77/246 (31%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 787  NNQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVASGSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             +           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DVGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             +      +  +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKNAIQAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFRSKA 1029


>gi|153003441|ref|YP_001377766.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027014|gb|ABS24782.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Anaeromyxobacter sp. Fw109-5]
          Length = 1054

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 67/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L  L        + ++P+  P               ++     
Sbjct: 8   RPIFAWVVAIIVMLAGALSIL-----TLPVSQYPAIAPPT-----------VSVI--ASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGASAKTLEDTVTQVIEQRMTGLDGLRYMSSSSDSSGNAQLTLTFEAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  D ++  +         +++     +       + S        DQI   
Sbjct: 110 KLQLAMPQLPQDVQRQGVRVVKSAASFLLIIGLVSEDGSMTRNDISDYAYASIQDQISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP RL     T   +S      N    G   G     +  
Sbjct: 170 NGVGEVQTFGSQ-YAMRIWLDPDRLTSFRLTPLDVSSAVQSQNAQVSGGQLGGLPAVEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        +       
Sbjct: 229 RLTATITAQTRL-------------QTAEEFRNILLRVNPDGSQVRLGDVARVELAGESS 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       A  +   T          L     P    +           
Sbjct: 276 EIETFFNGRPSSGIGVRLAAGANALDTAGAVRARMDELSKFFPPGLKAVYPVDTSPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SIEEVVITLAEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +     S+    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMSEEGLRPKSATRKSMSQITGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + FFGG      R F+IT+  S+ +S+  A+++  A+   +
Sbjct: 456 MAFFGGSVGVIYRQFSITIVASMALSVLVALTLTPALCATL 496



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 89/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V     + +  +I         + +        +++     +     ++++  
Sbjct: 258 SQVRLGDVARVELAGESSEIETFFNGRPSSGIGVRLAAGANALDTAGAVRARMDELSKFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P        +      R  I + ++ +  + + + + +++  + +   L     + + + 
Sbjct: 318 PPGLKAVYPVDTSPFVRLSIEEVVITLAEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   +  ++  IG  V+D +VV + +     +    +  +    KS+
Sbjct: 378 GTFGVLAAAGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLRPKSATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  V  ++      +PMA +GGSV      F+I +   + ++   ++ +   +   
Sbjct: 436 SQITGALVGIALVLSAVFVPMAFFGGSVGVIYRQFSITIVASMALSVLVALTLTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 84/262 (32%), Gaps = 11/262 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G   +       V  S   +   ++    +   N                 
Sbjct: 776  PFRMHPEDVGRWYVRQRGGEMVPFSAFATGSWTMGSPKLERFNGLPAVAIQGEPAPGHSS 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + E+V +  + +    +  + E      +       +  + I  +  L    + 
Sbjct: 836  GEAMAALEEIVGQLPSGVAADWSGLSYEERLSGANAP----ALYALSI-LVVFLCLAALY 890

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W   +  +  + L +   +   +L G+  ++     +LT +G S  + +++ +  R+ 
Sbjct: 891  ESWSIPVSVLLAVPLGVIGAVIASSLRGLPNDVYFQVGLLTTVGLSAKNAILIVEFARE- 949

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
              L+    S      ++    L   + TS+A  + VLP+A+    G     +    +  G
Sbjct: 950  --LHDRGRSAPAAALEAARMRLRPILMTSLAFVLGVLPLALASGAGAGSQNAIGFAVIGG 1007

Query: 805  IVVAASSSIFIAAPILLFIYDW 826
            ++ A + +I       + I   
Sbjct: 1008 MLSATALAILFVPLFFVLIARR 1029


>gi|53804054|ref|YP_114047.1| multidrug efflux transporter MexF [Methylococcus capsulatus str.
           Bath]
 gi|53757815|gb|AAU92106.1| multidrug efflux transporter MexF [Methylococcus capsulatus str.
           Bath]
          Length = 1055

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 71/544 (13%), Positives = 155/544 (28%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  +   IG +           + ++P  +P   +                  
Sbjct: 10  RPRFAIVLSVITVLIGGIAMF-----ALPIAQYPEVVPPTIV---------VSTTYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +++              ++T++F      +    +V   +  
Sbjct: 56  PKVIAETVAAPIEQEVNGVERMLYMSSQSTSDGQMQLTITFEIGTDMDIAQMQVQNRVSN 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  D ++  + T       +++            +  S   +    DQI       
Sbjct: 116 ALPKLPEDVRRQGVTTKKSSPDILLVIHLVSPNQRYDQLYLSNYALLNIRDQILRLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+R+  L  T   +       N      + G   L  S   Q 
Sbjct: 176 DVRTFGAGDYSMRVWLDPTRIAALNMTAGDVVRAIREQNIQVPAGVIGQPPLDGSPDFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++ +              +    I     G           I           
Sbjct: 236 NVNTMGRLASVE-------------QFGAIIVKYGEGGSLVRLRDVARIELGANRYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L          S +   +   T          L+          +          S   
Sbjct: 283 QLNNEDAVAMPISLRPGANALDTARRIKSKMQTLKQRFPEGVDYRIVYDTTIFVEQSLDA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  L+   ++ ++++ T A+++ LG +L   S+ G+V
Sbjct: 343 VTRTFFEALALVVLVVLVFLQTWRAALIPLLAVPVSIVGTFAVMAALGYSLNNLSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT---ALIATVVLF 478
           L IG+ VD  I+V E +        SV  +           I   ++      I    + 
Sbjct: 403 LAIGIVVDDAIVVVENVERHIGLGLSVKEAARQAMREVTGPIIAISVVLGAVFIPAAFVS 462

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+  S LIS F ++++  A+   ++     +   ++            
Sbjct: 463 GINGQFYRQFAVTIAASTLISAFNSLTLSPALAAVLLEPHHARKDRLSLWIDRLFGWLFR 522

Query: 539 AIQF 542
               
Sbjct: 523 GFNR 526



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  + + +   LG   L   + N+    A+L L+G +  + +++ +  +   
Sbjct: 902  SWILPLAIVLIVPMTLMCALGGVWLRSGDNNIFTQIALLVLVGLAAKNAILIVEFAK--- 958

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +       ++        + TS A  + VLP+      G  +  +  +P+ FG+
Sbjct: 959  TRREEGVDAMAAALEACRLRFRPILMTSFAFIMGVLPLMFATGAGAEMRQALGVPVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +      +         +     +
Sbjct: 1019 LGVTVFGLLFTPVFYHVLQRLADR 1042



 Score = 41.6 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 13/151 (8%)

Query: 690 WYFALGAITTLILDIT---KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           W  AL  +  + + I          A  G   N  ++  ++  IG  V+D +VV + +  
Sbjct: 365 WRAALIPLLAVPVSIVGTFAV---MAALGYSLNNLSLFGLVLAIGIVVDDAIVVVENV-- 419

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAF 803
             +     +S ++   +++ E  G  +  S+      +    V G  G     FA+ +A 
Sbjct: 420 -ERHIGLGLSVKEAARQAMREVTGPIIAISVVLGAVFIPAAFVSGINGQFYRQFAVTIAA 478

Query: 804 GIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
             +++A +S+ ++  +  + +    A+  R+
Sbjct: 479 STLISAFNSLTLSPALAAVLLEPHHARKDRL 509


>gi|239986444|ref|ZP_04707108.1| preprotein translocase subunit SecF [Streptomyces roseosporus NRRL
           11379]
          Length = 360

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 13/301 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+R R    G+SIL +I +I  +   GL  GI+FKGG          +  +       
Sbjct: 18  YDFIRNRKIWYGVSILITITAIIGVAVGGLRMGIEFKGGAVFTTDTKAQISTAQATDVAT 77

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                    Q         +R+Q    D+     + E +  ++            ++VGP
Sbjct: 78  EASGHQAIVQELGNGG---LRIQITEVDTAKANEIKETLSDELGLPANDINA---DLVGP 131

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++  K   G+ +  I ++IY+ I F+W  A+ A+  LI DIT T+G +AL G E  
Sbjct: 132 SWGEQIANKAWTGLGVFMILVVIYLAIAFEWRMAVAALIALIHDITITVGVYALVGFEVT 191

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ ++SIN TL RS+ T++
Sbjct: 192 PGTVIGLLTILGYSLYDTVVVFDSLKEGQKDITKQTRFTYSEIANRSINSTLVRSINTTV 251

Query: 778 AAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A + V  +   GG V     +   ++ +  G+   A SSIFIA P++  + +   +   
Sbjct: 252 VALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLKERDPQMKA 311

Query: 833 I 833
           +
Sbjct: 312 L 312


>gi|294775491|ref|ZP_06741003.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides vulgatus PC510]
 gi|294450636|gb|EFG19124.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides vulgatus PC510]
          Length = 1011

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 81/628 (12%), Positives = 179/628 (28%), Gaps = 48/628 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L  +I   GL+           +  +PS                  +     
Sbjct: 9   RRPVLATVLTIIILLFGLI-----GYNTLGVREYPSVDNPI-----------ISVTCSYS 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    ++  + +          +Q Q +IT+ F  S   E  A+ V   +
Sbjct: 53  GANADVIENQITEPLEQNINGIPGIRSLSSVSQQGQCRITVEFELSVDLETAANDVRDKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  D     +         I++     D      +E S        +Q+     
Sbjct: 113 SRAQRYLPRDCDPPTVSKADADATPILMVAIQSDS--RSLLELSEIADLTVKEQLQTISE 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP+++     T   +                           
Sbjct: 171 VSSVSIWGEKRYSMRLWLDPTKMAGYGITPVDVKNAITNE-------------------- 210

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                     T K   +I   E+G R              A +  
Sbjct: 211 NIELPSGSIEGNTVELTLRTMGQMHTAKEFNNIILKEVGGRVVRFSDIGYAELGPADIKS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +    +   +   +   +     +        ++              N      S 
Sbjct: 271 YMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K T      LV+I++F+ +   +  L+    I +++I    ++ + G ++ + ++  
Sbjct: 331 DEVKSTVYEAFVLVIIIIFLFLRDWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I++ E I     +    F +   G    +  +  + IT +   + + F
Sbjct: 391 VVLSVGLVVDDAIVMTENIYIRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVF 450

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R F+  +  S++IS F A++    +   ++  ++ +         FF   +
Sbjct: 451 MEGTSGRLFREFSFVVAGSVIISSFAALTFTPMLATKLLIKREKQGWFYQKTEPFFEGMN 510

Query: 537 CIAIQ----FMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            I  +    F++ R W +    I+     +  +        ++ +  I +   A    + 
Sbjct: 511 RIYARSLNAFLKRRIWAIPVTVIMLIAIGVLWVQIPAEMAPMEDRSQISINTRAAEGANY 570

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLV 619
             +R   E +     S           V
Sbjct: 571 EYIRDYTEDINNLVDSIIPDAESVTARV 598



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 73/206 (35%), Gaps = 9/206 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A  + +E +KK + + V  S   +          E+        ++  I + +++    
Sbjct: 297 DAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASIDEVKSTVYEAFVLVIIIIFLFL---R 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +        + G   N+  + AV+  +G  V+D +V+ + +    
Sbjct: 354 DWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLAVVLSVGLVVDDAIVMTENI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 +   +   +   E     + T++      LP+    G+       F+  +A  +
Sbjct: 411 IRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVFMEGTSGRLFREFSFVVAGSV 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           ++++ +++     +   +   R K  
Sbjct: 471 IISSFAALTFTPMLATKLLIKREKQG 496



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/526 (12%), Positives = 150/526 (28%), Gaps = 42/526 (7%)

Query: 1    MRNNPWLV-ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
            ++   W + +   M+  IG+L        Q   +  P      +IS+      G++    
Sbjct: 521  LKRRIWAIPVTVIMLIAIGVLWV------QIPAEMAPMEDRS-QISINTRAAEGANYEYI 573

Query: 60   VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             D  + +N  +     +  S           +      I ++  D + ++    +V   +
Sbjct: 574  RDYTEDINNLVDSIIPDAES-------VTARVSSGSGNIRITLKDIKDRDYTQMEVAERI 626

Query: 120  QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                              T  +      S     +           +    I+++     
Sbjct: 627  SQAIR-----------NKTKARAFVQQQSSFGGRRGSMPVQYVLQAVS---IEKLEKVLP 672

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        Q+           L  ++ +M  +         G            G 
Sbjct: 673  AFLSKVYDNPTFQMADVD-------LKFSSPEMRVNINRDKAGTMGATVRDIAETLQYGL 725

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                     ++G            + + P    S      +       + +    +V   
Sbjct: 726  SGQRMGYFYMNGKQYEILGQINRQQRNTPANIKSIYIRSDKGEMIQLDNLVEFVESVAPP 785

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                    I+    +  A ++   TI         + A +L          +      S 
Sbjct: 786  KLYHYNRFISA---TVSAGLADGKTIGQGLEEMDKIAAQTLDETFRTALSGDSKDYRESS 842

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            S       +   L+ ++L       K   +   ++ L +   L  +   G T+ + S  G
Sbjct: 843  SSLMFAFILALILIYLILAAQFESFKDPFIIMLTVPLAIAGALIFMYAGGITMNIFSQIG 902

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            I++ IGL   + IL+ E   ++    ++   ++     +    I  ++ + ++  + L F
Sbjct: 903  IIMLIGLVAKNGILIVEFANQKQESGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAF 962

Query: 480  FGGGAVRG---FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G            +   +L+S F  + IV A+  +I   + +K+
Sbjct: 963  ATGEGANQRIAMGTAVVGGMLVSTFLTMYIVPAIYSYISTNRNVKT 1008



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ L I   L F    GI  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPFIIMLTVPLAIAGALIFMYAGGITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +   +  +    I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQESGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAFATGEGANQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
            +V+   +++I   I  +I   R
Sbjct: 983  LVSTFLTMYIVPAIYSYISTNR 1004


>gi|269219371|ref|ZP_06163225.1| protein-export membrane protein SecF [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211164|gb|EEZ77504.1| protein-export membrane protein SecF [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 377

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 138/307 (44%), Gaps = 11/307 (3%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L     +  F+  R +   IS+     S   L   GLN GI+F GG Q  V   +  D
Sbjct: 8   NDLYTGRRSFPFIAKRKYWFAISLALIAISAVTLAVKGLNLGIEFTGGSQFTVSHTKVTD 67

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  + +      +     G+    ++             V   + K         +
Sbjct: 68  QKPAADIMRTYAKDTAARVVQVGDSTLRIQTAETKLSDDNVRTVRSELAKSYK---VSPS 124

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
              +  +GP   +++  K + G I   +A+ + + + F+ W  A GAI  L  D+  T+G
Sbjct: 125 NVASTFIGPTWGQDISSKALKGFIAFLVAVALGLTLYFRSWRNAAGAILALFNDLVITIG 184

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLIDKSINE 767
            +ALFG E   + +  +LT++GYS+ D VVV+D++R+N       +  +F + ++ ++N+
Sbjct: 185 VYALFGFEVTPSTIIGLLTILGYSLYDTVVVFDKVRENSAKLLSQSDYTFAESVNLAVNQ 244

Query: 768 TLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           TL RS+ TS+ + + V+ +        G   +   A+ M  G++++  SS+FIA+PI + 
Sbjct: 245 TLIRSLNTSVTSLLPVVSILFIGTYFLGAGTLRDLALVMFVGMILSTLSSMFIASPIAVQ 304

Query: 823 IYDWRAK 829
           +     K
Sbjct: 305 LAHLDPK 311


>gi|261251242|ref|ZP_05943816.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio orientalis CIP 102891]
 gi|260938115|gb|EEX94103.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio orientalis CIP 102891]
          Length = 1050

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 76/692 (10%), Positives = 187/692 (27%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPKISPP-------------SVSVTAY 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVENMIYMSSKSANDGSYNLNVTFDVGTDPDMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  I     DQ+  
Sbjct: 110 NRVSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGKYDDQFLINYINLNVKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ +       N        G     ++
Sbjct: 170 VKGISEVSVIGGGEYAMRVWLDPEKMANLKLTTSDVYGALAEQNVQVAAGRVGAAPYSEA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +  +              +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRLESVD-------------EFENVVLRANPDGSSVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    L   L                     
Sbjct: 277 YDGSGKFRGQDASIVALSLQSDANALESGKAVMELLDNLSVNFPEGMAYETSYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++   G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQTTGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +  L   
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPSLSPRKATLIAMKEVTGPIITSTLVLLAVF 456

Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           +    L    G   R FA+T+ +S++IS   A+++  A+   +         +   + + 
Sbjct: 457 LPVAMLPGITGIMYRQFALTICISVVISSINALTLSPALCSLVLKQGGGNTSRWFTAFNS 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             +A        +     +     T       + KG + + V  
Sbjct: 517 GLERITVRYGQIAGFLVKKALLLVAFFVVAVGAVTFFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS      + L          DG              +     +   +    T  
Sbjct: 577 PDAASLSRTEEVTKQLIDMVEQEPGVDGITVANGYAFMTGAAASNGASLFIKLHDWDTR- 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  +   +  +I+     +    ++ + 
Sbjct: 636 NSFDGDHSANAIAQRINGRAAMQLPQAIVFAM 667



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 84/235 (35%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D S +    + + +        +++   + +  +   ++   P 
Sbjct: 262 VYLKDVARVELGKKFYDGSGKFRGQDASIVALSLQSDANALESGKAVMELLDNLSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GMAYETSYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         S+S R     ++ E
Sbjct: 382 FAIMQTTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPSLSPRKATLIAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      LP+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIITSTLVLLAVFLPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 495



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/447 (12%), Positives = 118/447 (26%), Gaps = 26/447 (5%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            L+      P + GI +  G A  +    +       + +     +   G   A +     
Sbjct: 592  LIDMVEQEPGVDGITVANGYAFMTGAAASNGASLFIKLHDWDTRNSFDGDHSANAIAQRI 651

Query: 467  NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
            N      +   ++F  G  AV G     G   ++      S   +   M   I    K  
Sbjct: 652  NGRAAMQLPQAIVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMGQMIEEANKQP 711

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             I     +    +P                            L +  +N    F    ++
Sbjct: 712  EIGFTFSTFRANVPHYYVDIDREKAQQLGIPLSSVFQTLQGNLGSLYVNDFTMFGKNFRV 771

Query: 582  GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + A+              V  S       S  +        D    + +          
Sbjct: 772  TMQADGEHRKGMEDLERFHVRSSSGEMIPLSTLVSYEQIFEPDVAWRYNMYRSAIIQGQP 831

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
            A           +  +      Q  +     ++ + +  G   +   +   + IY   + 
Sbjct: 832  APGYSSGDAIAAMERVAAEILPQGYQYEWTGMAYQEVLAGNQAIFAFALALIFIYLFMVA 891

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   L  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892  QYESWTIPLAIILVVPIATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--SFAIPMA 802
              ++     +       +           TS +  + + P+    G   +   S  I + 
Sbjct: 952  --VEREEKDVPIDKAAVEGGKLRFRAVNMTSWSFILGIFPLIFASGAGHVSQNSLGISLI 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++    +  F+       +   R K
Sbjct: 1010 GGLLCVLLAGTFLIPGFYAMVQRKREK 1036


>gi|239939960|ref|ZP_04691897.1| preprotein translocase subunit SecF [Streptomyces roseosporus NRRL
           15998]
          Length = 360

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 82/317 (25%), Positives = 142/317 (44%), Gaps = 13/317 (4%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L    +   F+R R    G+SIL +I +I  +   GL  GI+FKGG     
Sbjct: 2   SRLGNFGARLYRGEVGYDFIRNRKIWYGVSILITITAIIGVAVGGLRMGIEFKGGAVFTT 61

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                +  +                Q         +R+Q    D+     + E +  ++ 
Sbjct: 62  DTKAQISTAQATDVATEASGHQAIVQELGNGG---LRIQITEVDTAKANEIKETLSDELG 118

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                      ++VGP    ++  K   G+ +  I ++IY+ I F+W  A+ A+  LI D
Sbjct: 119 LPANDINA---DLVGPSWGEQIANKAWTGLGVFMILVVIYLAIAFEWRMAVAALIALIHD 175

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLI 761
           IT T+G +AL G E     V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ 
Sbjct: 176 ITITVGVYALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEGQKDITKQTRFTYSEIA 235

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIA 816
           ++SIN TL RS+ T++ A + V  +   GG V     +   ++ +  G+   A SSIFIA
Sbjct: 236 NRSINSTLVRSINTTVVALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIA 295

Query: 817 APILLFIYDWRAKNARI 833
            P++  + +   +   +
Sbjct: 296 TPLVADLKERDPQMKAL 312


>gi|332855909|ref|ZP_08436083.1| putative ATP synthase F0, A subunit [Acinetobacter baumannii
           6013150]
 gi|332867128|ref|ZP_08437407.1| putative ATP synthase F0, A subunit [Acinetobacter baumannii
           6013113]
 gi|332727228|gb|EGJ58677.1| putative ATP synthase F0, A subunit [Acinetobacter baumannii
           6013150]
 gi|332734201|gb|EGJ65331.1| putative ATP synthase F0, A subunit [Acinetobacter baumannii
           6013113]
          Length = 1031

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 76/691 (10%), Positives = 207/691 (29%), Gaps = 46/691 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   +        ++R+P   P               + +  +
Sbjct: 8   QRPIFANVLAIIVMAFGIFSVM-----NLPVERYPDIAPPK-------------ITVSAN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSSSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVIGLYDSTGKTGNIELSDYLTTHVVDNLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGETDIFGSQ-YAMRIWLNPDKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKSNKTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +    +     S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPVAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLVEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     +   S   +           +    +      +
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG      R F+IT+  ++ +S+  A+ +  A+   I++            ++  
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLIVALILTPALCALILKPNPQPQRWAVWFNQKI 515

Query: 533 LIPDCIAIQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                  I+        ++   V    L ++ ++            + +G + + +    
Sbjct: 516 EQLKNQYIKLVQTSIHYSKSVIVIFVALIAVFTLFYNGLKSGFIPKEDQGILSVQIKLVD 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +S  +   E ++   ++ ++ + +   +   +   G      +    +K        
Sbjct: 576 SAPISQSQKIGEQVRQYFLTQEDKNVDLVLIRYGRNYSGTGQNLAQGFIALKPWDVRTGK 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            ++ +  +    K         I   + +++
Sbjct: 636 ENSAEAIQKRAMKYFSHFNNAQINVTLPASV 666



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 8/212 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   +S ++   +S+ E  G  V  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   + ++   ++ +   +   I     +  R
Sbjct: 475 LVAAMALSLIVALILTPALCALILKPNPQPQR 506



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 77/246 (31%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 787  NDQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVASGSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             I           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DIGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             +      +  +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKNAIQAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFKSKA 1029


>gi|16131386|ref|NP_417971.1| multidrug transporter, RpoS-dependent [Escherichia coli str. K-12
           substr. MG1655]
 gi|89110499|ref|AP_004279.1| multidrug transporter, RpoS-dependent [Escherichia coli str. K-12
           substr. W3110]
 gi|157162992|ref|YP_001460310.1| multidrug resistance protein MdtF [Escherichia coli HS]
 gi|170018257|ref|YP_001723211.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Escherichia
           coli ATCC 8739]
 gi|170083025|ref|YP_001732345.1| multidrug transporter, RpoS-dependent [Escherichia coli str. K-12
           substr. DH10B]
 gi|188496234|ref|ZP_03003504.1| multidrug resistance protein MdtF [Escherichia coli 53638]
 gi|238902603|ref|YP_002928399.1| multidrug transporter, RpoS-dependent [Escherichia coli BW2952]
 gi|253771656|ref|YP_003034487.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254163436|ref|YP_003046544.1| multidrug transporter, RpoS-dependent [Escherichia coli B str.
           REL606]
 gi|300950940|ref|ZP_07164818.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           116-1]
 gi|300957314|ref|ZP_07169537.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           175-1]
 gi|301646070|ref|ZP_07245974.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           146-1]
 gi|307140202|ref|ZP_07499558.1| multidrug transporter, RpoS-dependent [Escherichia coli H736]
 gi|312972215|ref|ZP_07786389.1| multidrug resistance protein MdtF [Escherichia coli 1827-70]
 gi|331644220|ref|ZP_08345349.1| multidrug resistance protein MdtF [Escherichia coli H736]
 gi|586678|sp|P37637|MDTF_ECOLI RecName: Full=Multidrug resistance protein MdtF
 gi|466651|gb|AAB18490.1| unnamed protein product [Escherichia coli str. K-12 substr. MG1655]
 gi|1789930|gb|AAC76539.1| multidrug transporter, RpoS-dependent [Escherichia coli str. K-12
           substr. MG1655]
 gi|85676530|dbj|BAE77780.1| multidrug transporter, RpoS-dependent [Escherichia coli str. K12
           substr. W3110]
 gi|157068672|gb|ABV07927.1| multidrug resistance protein MdtF [Escherichia coli HS]
 gi|169753185|gb|ACA75884.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli ATCC 8739]
 gi|169890860|gb|ACB04567.1| multidrug transporter, RpoS-dependent [Escherichia coli str. K-12
           substr. DH10B]
 gi|188491433|gb|EDU66536.1| multidrug resistance protein MdtF [Escherichia coli 53638]
 gi|238861826|gb|ACR63824.1| multidrug transporter, RpoS-dependent [Escherichia coli BW2952]
 gi|242379034|emb|CAQ33832.1| mdtF, subunit of MdtEF-Tolc multidrug efflux transport system
           [Escherichia coli BL21(DE3)]
 gi|253322700|gb|ACT27302.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|253975337|gb|ACT41008.1| multidrug transporter, RpoS-dependent [Escherichia coli B str.
           REL606]
 gi|253979493|gb|ACT45163.1| multidrug transporter, RpoS-dependent [Escherichia coli BL21(DE3)]
 gi|260447471|gb|ACX37893.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli DH1]
 gi|300315926|gb|EFJ65710.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           175-1]
 gi|300449799|gb|EFK13419.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           116-1]
 gi|301075685|gb|EFK90491.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           146-1]
 gi|309703920|emb|CBJ03261.1| multidrug resistance protein [Escherichia coli ETEC H10407]
 gi|310334592|gb|EFQ00797.1| multidrug resistance protein MdtF [Escherichia coli 1827-70]
 gi|315138090|dbj|BAJ45249.1| multidrug transporter, RpoS-dependent [Escherichia coli DH1]
 gi|315618455|gb|EFU99042.1| inner membrane protein [Escherichia coli 3431]
 gi|323934704|gb|EGB31094.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E1520]
 gi|323939448|gb|EGB35658.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E482]
 gi|331036514|gb|EGI08740.1| multidrug resistance protein MdtF [Escherichia coli H736]
 gi|332345477|gb|AEE58811.1| inner membrane protein BpeB [Escherichia coli UMNK88]
          Length = 1037

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|57237975|ref|YP_179224.1| preprotein translocase subunit SecD [Campylobacter jejuni RM1221]
 gi|57166779|gb|AAW35558.1| protein-export membrane protein SecD [Campylobacter jejuni RM1221]
 gi|315058534|gb|ADT72863.1| Protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 526

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 159/548 (29%), Positives = 289/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++  +   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKINYRLIIFMAVFIFGVAFSLPSFLQSE---------RGAKINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 52  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNIHDDILEFTLLDNADIAKVENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + + +      I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------KGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTVAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS 218

Query: 232 ------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++ PV++ + +  G+++F + 
Sbjct: 219 YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYPVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 459 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRR 526



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ +++++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGV-AGIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRASIEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      K+ 
Sbjct: 458 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSN 515


>gi|193061818|ref|ZP_03042915.1| multidrug resistance protein MdtF [Escherichia coli E22]
 gi|194426941|ref|ZP_03059493.1| multidrug resistance protein MdtF [Escherichia coli B171]
 gi|260846303|ref|YP_003224081.1| multidrug transporter MdtF, RpoS-dependent [Escherichia coli
           O103:H2 str. 12009]
 gi|192932608|gb|EDV85205.1| multidrug resistance protein MdtF [Escherichia coli E22]
 gi|194414902|gb|EDX31172.1| multidrug resistance protein MdtF [Escherichia coli B171]
 gi|257761450|dbj|BAI32947.1| multidrug transporter MdtF, RpoS-dependent [Escherichia coli
           O103:H2 str. 12009]
          Length = 1037

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|209747512|gb|ACI72063.1| putative integral transmembrane protein [Escherichia coli]
 gi|326337961|gb|EGD61795.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. 1125]
          Length = 628

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 63/522 (12%), Positives = 148/522 (28%), Gaps = 41/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
             S             +    D   L +   T   +     + N        G       
Sbjct: 169 LNSVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNAQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL 496



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|257060996|ref|YP_003138884.1| preprotein translocase subunit SecF [Cyanothece sp. PCC 8802]
 gi|256591162|gb|ACV02049.1| protein-export membrane protein SecF [Cyanothece sp. PCC 8802]
          Length = 310

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 140/252 (55%), Gaps = 10/252 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +     +P+    V+  L    +   + Q  +G    ++ ++ +  D   +T++ + + +
Sbjct: 58  VQGNCEKPISTGEVQEILNQQGLSSSTIQVLEGN---ILSIRSKTLDVDQRTKLQQALTE 114

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           KI +  P       + VG  + +EL   GI+ +++S   +++Y+ +RF++ +A  AI  L
Sbjct: 115 KIGQFDPE--TVQIDTVGATVGKELFTSGILALLVSFFGIIVYLSVRFQFDYAFFAIVAL 172

Query: 701 ILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + D+  T G FA+ G+    E +   + ++LT+IG+SVND VV+YDR+R+N+   T  ++
Sbjct: 173 VHDVLVTAGVFAILGLVAGVEVDSLFLVSLLTIIGFSVNDTVVIYDRIRENL-EKTPELT 231

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             D++D ++N+TL RS+ TS+   + ++ + ++GG  +  FA+ +  G +  A SSIFIA
Sbjct: 232 INDIVDNAVNQTLTRSINTSLTTVLPLIAIFLFGGETLKYFALALIIGFIAGAYSSIFIA 291

Query: 817 APILLFIYDWRA 828
           + +L    + + 
Sbjct: 292 STLLALWRNRQQ 303


>gi|193077373|gb|ABO12177.2| AdeB [Acinetobacter baumannii ATCC 17978]
          Length = 1036

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 80/685 (11%), Positives = 179/685 (26%), Gaps = 44/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 8   RRPVFAWVIAIFIIIFGLLSI-----PKLPIARFPSVAPP-------------QVNISAT 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +IT +F      E     V 
Sbjct: 50  YPGATAKTINDSVVTLIERELSGVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQVVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 170 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S +              +        +            N+      
Sbjct: 229 QLITIPLSAQGQLSSLE-------------QFKNISLKSKTNGSVIKLSDVANVEIGSQA 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 276 YNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPEGMEFSIPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 336 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  +   +         S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLNPKDATSKAMKEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      + F +TM +SIL S   A+ +  A+   I++            + F 
Sbjct: 456 PMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL---ANRPV 589
              D +  ++       +  ++   +  + +               +             
Sbjct: 516 RSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFAGMKYWPTAFMPEEDQGWFMTSFQ 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S   +      +        D             G S A   V              S
Sbjct: 576 LPSDATAERTRNVVNQFENNLKDNPDVKSNTTILGWGFSGAGQNVAVAFTTLKDFKERTS 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
           +                    + V+
Sbjct: 636 SASKMTSAVNTSMANSTEGETMAVL 660



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 87/239 (36%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V     +    +++   +P 
Sbjct: 261 IKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 321 GMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  ++ +D   K
Sbjct: 378 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLNPKDATSK 434

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPMA   GSV      F + M+  I+ +A  ++ +   +
Sbjct: 435 AMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPAL 493



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 786  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 845

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 846  GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 897

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 898  PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 954

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 955  TVAAAKLRLRPILMTSLAFTCGVIPLVIASGAS-SETQHALGTGVFGGMISATILA 1009


>gi|160872702|ref|ZP_02062834.1| protein-export membrane protein SecD [Rickettsiella grylli]
 gi|159121501|gb|EDP46839.1| protein-export membrane protein SecD [Rickettsiella grylli]
          Length = 620

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 167/531 (31%), Positives = 274/531 (51%), Gaps = 36/531 (6%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N L  +    +  A+    + LGLDLRGG H  LEVD ++ +   ++  +  +  
Sbjct: 101 YTVAVNLLSSAPR--WMQAIGAVPMKLGLDLRGGVHFALEVDINNLIAQRMEGLAKNISE 158

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++  I    +   + ++++ F D          +             +  K L+    
Sbjct: 159 NLQQARIRYLDLTPKEKQLSILFRDKNSLTQAKRLLQQQFPAFEFTEATENPKQLI---- 214

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
                +V S+  ++ +   AI+Q++  +R RI+++G++E  +Q+ GS+RIL+ LPG QD 
Sbjct: 215 -----VVWSKQGLNNLRQLAIDQTVNTLRNRINELGVAEPIVQQQGSNRILVDLPGVQDI 269

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD-----GNQYLVEDKVEISGIHL 254
           +R +Q+LG TA + F  V   +              S          L++ +V ++G  +
Sbjct: 270 ARAQQILGGTATIEFRLVDITHDPYLAQVNNSSPAGSQLYHYENQPVLLKKQVILTGNSI 329

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP- 313
             A+ +FD       V IS    G   F +VT +N+GKPLA+V      +   I+  +  
Sbjct: 330 TDASTSFDESGRSA-VSISLGGGGESYFHQVTGENVGKPLAIVYVETKNSVKRIHGKMIH 388

Query: 314 ------------------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                                 Q++G    + A  L+ +LRAG+LP  + +VE+R +G  
Sbjct: 389 IPRKVERIISIARIQTALPPNFQVTGLTNPQEALNLSLLLRAGALPAPIYVVEQRTIGPQ 448

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG+++I+KG  +IV G +L V+FM   Y  +G +AD ++ LNV+L +ALLSLLG TLTLP
Sbjct: 449 LGAENIHKGILSIVVGFILAVIFMAAYYSVFGFIADIALALNVVLLVALLSLLGMTLTLP 508

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            +AGIVL +G+AVD+N+L+ ERIREE R+  S   S+D G+ RA  TI D+N+T LI   
Sbjct: 509 GMAGIVLTVGMAVDANVLIFERIREELRRGVSPQSSIDAGYDRALITIIDANVTTLIVAF 568

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +LF  G G+++GFA+T+   +L SM T I + RA++      + +K + I 
Sbjct: 569 ILFGLGTGSIKGFAVTLTFGLLTSMLTGIMVTRALINAWYGGRSLKRLPIG 619



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 37/204 (18%), Positives = 90/204 (44%), Gaps = 4/204 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +  Q  +   +  +   +     +     +GP++  E I KGI+ +++  I  +I++   
Sbjct: 416 TNPQEALNLSLLLRAGALPAPIYVVEQRTIGPQLGAENIHKGILSIVVGFILAVIFMAAY 475

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +   F   A   L L++   +   +L G+   L  +A ++  +G +V+  V++++R+R+ 
Sbjct: 476 YSV-FGFIADIALALNVVLLVALLSLLGMTLTLPGMAGIVLTVGMAVDANVLIFERIREE 534

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++     +S +  ID   +  L   +  ++   I    +   G   I  FA+ + FG++ 
Sbjct: 535 LR---RGVSPQSSIDAGYDRALITIIDANVTTLIVAFILFGLGTGSIKGFAVTLTFGLLT 591

Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831
           +  + I +   ++   Y  R+   
Sbjct: 592 SMLTGIMVTRALINAWYGGRSLKR 615


>gi|50120108|ref|YP_049275.1| acriflavin resistance protein B [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610634|emb|CAG74079.1| acriflavin resistance protein B [Pectobacterium atrosepticum
           SCRI1043]
          Length = 1042

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 71/690 (10%), Positives = 182/690 (26%), Gaps = 51/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  M+   GLL  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVLAIMVMLTGLLAIV-----KLPIAQYPTIAPPA-------------IEITANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S      +ITL+F  S   +    +V  
Sbjct: 50  PGADASTLQDSVTQVIEQNMNGIDNLMYMSSSSDSSGTVQITLTFEASTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVNVQKSSSSFLMVAAFISEDGKMSQEDIADYVAANVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T+  +S    + NN       G        
Sbjct: 170 SGVGDAQLFGSQ-YAMRIWLDPNKLNNYQLTSGDVSAAIRVQNNQIAAGQLGGAPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 QLNASIIAQTRLNSAE-------------EFSKILLKVNADGSQVRLKDVARVELGAEGY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T                     +           
Sbjct: 276 DVIARFNGKPAAGIGIKLATGANALDTANAVKDALTKAEEFFPSGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + F GG      R F+IT+  ++++S+  A+ +  A+   +           +       
Sbjct: 456 MAFTGGSTGAIYRQFSITIVSAMVLSVLVALILTPALCATLLKPIAKGDHGEKKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +A        + V   ++    ++  L         + +G +   V
Sbjct: 516 NRLFEKSTQHYTDSVANILRSTGRYLVIYLLIVVGLALLFLRLPTSFLPDEDQGVLLNIV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      +  ++ +    +  +  + +  F V      G           +     
Sbjct: 576 QLPSGATQENTQKIMDRMTQYYLDNEKGNVKSVFTVTGFGFSGRGQNAGLAFASLNDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                + +            +     +  V
Sbjct: 636 RSGAENKVMAIAGRANAAFSQYKEAMVFAV 665



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +        +        +++     ++    K  E  
Sbjct: 258 SQVRLKDVARVELGAEGYDVIARFNGKPAAGIGIKLATGANALDTANAVKDALTKAEEFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA  GGS       F+I +   +V++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFTGGSTGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            + +      +  L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  DAMALMEEFVTKLPQGIGYQWTGMSYQERLSGNQAPAIYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L I   L    + G+E ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGIIGALIAANMTGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLDAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|331675002|ref|ZP_08375759.1| multidrug resistance protein MdtF [Escherichia coli TA280]
 gi|331067911|gb|EGI39309.1| multidrug resistance protein MdtF [Escherichia coli TA280]
          Length = 1037

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGCLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|299137788|ref|ZP_07030969.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX8]
 gi|298600429|gb|EFI56586.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX8]
          Length = 1058

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 157/548 (28%), Gaps = 33/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  +I  +GL+       P      +P  +P + +                  
Sbjct: 10  RPIFAIVLSIVIFSLGLIAI-----PMLPSGEYPEVIPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             + ++ ++F      +  A +V   +  
Sbjct: 56  PKEIAESVAEPLEEAINGVEGIMYMKSVAGSDGSLQVVVTFRPGVDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            ++      +    D++       
Sbjct: 116 ALSRLPDEVRQFGVTTQKQSPTPLMYVSLYSPDKRYDSLYLRNYAVLHIKDELSRLPGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T A +       N        G      +     
Sbjct: 176 DVQMIGSGDYAMRLWLDPNQLASRGLTAADVVNAVREQNVQVSAGQLGAEPSPKTTELLI 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +  D    +         +    +      
Sbjct: 236 SINVRGRLRSEQ-------------EFRDIVLKDGGDGQIVHLSDVARVELGASDYTMDM 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +      +       L A   P                S   
Sbjct: 283 YSDRQKAVAIGIFLTPGANALGVANSVYKRFRELSADFPPGIAYKPIWDPTVFVRESIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G+V
Sbjct: 343 VEHTLIEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFAWLYLLGYSINTLTLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+ VD  I+V E +    ++  +   +           I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIQEGLNPCAAAHQAMREVSGPIIAIALVLCAVFVPMAFLS 462

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   ++R        +       F  +  
Sbjct: 463 GVTGQFYRQFAVTIAISTVISAVNSLTLSPALAAQLLRGHDAPKDVLARGIERVFGWLFH 522

Query: 537 CIAIQFMR 544
                F R
Sbjct: 523 PFNRFFER 530



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 82/240 (34%), Gaps = 6/240 (2%)

Query: 594  VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            + S +  +                   +       ++  +V+  + +   +++P   +  
Sbjct: 805  IGSVVTVVPTYGPDPVMRYNGYPAADLIGDSDPKMLSSGQVVTKLTEIANKVLPRGIVLE 864

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
               +  +   +     +V  +   +A L+   +   W   L  I  + + +   L    L
Sbjct: 865  WTDLSYQQVTQSHAAAVVFPLAVMLAFLVLAALFESWTLPLAVILIVPVCMCAALLGVWL 924

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
               + N+     ++ L+G +  + +++ +  R+   L     S  +   ++    L   V
Sbjct: 925  TDGDNNVFVQVGLVVLMGLACKNAILIVEFARE---LEIQGKSIVEAALEACRMRLRPIV 981

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS+A     +P+ +    G  V  +  I +  G++      +F+     + +  W  K 
Sbjct: 982  MTSIAFIAGSVPLLLGHGAGSEVRAATGITVFSGMLGVTLFGLFLTPVFYVALRTWTKKK 1041



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  +  L G   N   +  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLIAVPVSVVGTFAWLYLLGYSINTLTLFGMVLAIGIVVDDAIVVVENVERNIQ 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                ++      +++ E  G  +  ++      +PMA   G        FA+ +A   V
Sbjct: 425 E---GLNPCAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYRQFAVTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAVNSLTLSPALAAQLLR 500


>gi|251798364|ref|YP_003013095.1| protein-export membrane protein SecF [Paenibacillus sp. JDR-2]
 gi|247545990|gb|ACT03009.1| protein-export membrane protein SecF [Paenibacillus sp. JDR-2]
          Length = 306

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 82/303 (27%), Positives = 154/303 (50%), Gaps = 6/303 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    +   F++ R      S + +I  I ++    LN+G+DFK G  + +L  + +  
Sbjct: 1   MLYNAKVRFDFIKHRNKFFMFSAILTIVGILMVSIFHLNFGVDFKAGTNMDILVGKKISQ 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
              +  L      DI+        +          D V +   +++++         +  
Sbjct: 61  EEAKDILSQSGYSDITPTVGGTNGD----RVSARFDDVLEQSKVQVIEDAFKAKYGDNVS 116

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
               +V P I++EL  K I  VII+++A+++Y+ IRF+W  AL A   ++ D    +  F
Sbjct: 117 SEVNVVSPDIAQELGVKAIYAVIIASVAIMLYVMIRFEWRMALAANIAILYDAFVVITMF 176

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS--FRDLIDKSINETL 769
           ++F ++ +L  +AAVLT IGYS+NDK+V++DR+R+N++   T  +    DL+++S+ +T+
Sbjct: 177 SIFRLQVDLPFIAAVLTTIGYSINDKIVIFDRIRENLRFSKTKNADQIGDLVNQSLWQTM 236

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++YT +A  I    + ++G   I  FA+    G+   A SSI IAAP+ + +   +  
Sbjct: 237 ARNIYTVLAVLIIATCLFIFGSESIKLFALAKMIGLASGAYSSICIAAPLWMVMKSKQKP 296

Query: 830 NAR 832
           + +
Sbjct: 297 STK 299


>gi|28901064|ref|NP_800719.1| preprotein translocase subunit SecD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260879915|ref|ZP_05892270.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AN-5034]
 gi|260894591|ref|ZP_05903087.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           Peru-466]
 gi|28809577|dbj|BAC62552.1| protein-export membrane protein SecD [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308086358|gb|EFO36053.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           Peru-466]
 gi|308092278|gb|EFO41973.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           AN-5034]
          Length = 611

 Score =  190 bits (482), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 154/516 (29%), Positives = 267/516 (51%), Gaps = 34/516 (6%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR----SF 80
            F   S+   + + M  + I LGLDLRGG   +L VD +           DE+       
Sbjct: 113 TFSYVSVAPEWLNEMGFSPIKLGLDLRGGVQFLLNVDVNKAFEEQRDALIDEINASRDQR 172

Query: 81  LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           ++   +      +  N+IT+    +   E    +V  FL+              +  ++ 
Sbjct: 173 VRGVQVR----AESGNRITV----NSDSEQALSEVNKFLRQ--------NYPGWISKSSS 216

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
           +   +  S+ NI +  S  ++Q+++I+R RI+++GI+E+ +QR G   I I+LPG QDP+
Sbjct: 217 RGFVLEPSEQNIQEFQSSTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELPGVQDPA 276

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           + + ++G TA ++F++V    + +        L+D+DG   ++  +  ++G H+  A A 
Sbjct: 277 QAKNVIGATASLAFYEVKD--ASQAHSSQDLVLQDNDGRTVILAKRPVLTGEHIVNARAG 334

Query: 261 FDPKTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
            D      V        G            +    V R+       V      + +    
Sbjct: 335 VDKMGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERVISVATI 394

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           Q+    + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+ 
Sbjct: 395 QSQLGSQFRITGAGSMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALA 454

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAV 428
            G+ L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AV
Sbjct: 455 LGMGLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAV 514

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D+N+++ ERI+++ R+ +S   ++D+GF  A+STI D+NIT +I  V+L+  G G ++GF
Sbjct: 515 DTNVIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGF 574

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           A+T+GL +L SMFT +   RAM+  I      + + 
Sbjct: 575 ALTLGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 610



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 409 SMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 468

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L  ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 469 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 527

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SF   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 528 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 584

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+   A+ 
Sbjct: 585 SMFTGVFASRAMINLIWGRDARR 607


>gi|301028233|ref|ZP_07191502.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           196-1]
 gi|299878719|gb|EFI86930.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           196-1]
          Length = 1037

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLAYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|262191677|ref|ZP_06049854.1| protein-export membrane protein SecD [Vibrio cholerae CT 5369-93]
 gi|262032466|gb|EEY51027.1| protein-export membrane protein SecD [Vibrio cholerae CT 5369-93]
          Length = 526

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 151/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 26  ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRA 85

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   S++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 86  ERLRGVSVQAMGND---AFEVKTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 134

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 135 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 194

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 195 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 252

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 253 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 312

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 313 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 372

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 373 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 432

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 433 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 492

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 493 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 525



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 324 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 383

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 384 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 442

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 443 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 499

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 500 SMFSGVFASRALINLVWGRDTRR 522


>gi|304412041|ref|ZP_07393651.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS183]
 gi|307305936|ref|ZP_07585682.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica BA175]
 gi|304349591|gb|EFM13999.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS183]
 gi|306911429|gb|EFN41855.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica BA175]
          Length = 1044

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 70/691 (10%), Positives = 179/691 (25%), Gaps = 49/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P+  P   +                  
Sbjct: 8   RPIFAWVIALIIMLAGILSI-----RSLPVSQYPNIAPPTVV---------ISANYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        ITL+F      +    +V   LQG
Sbjct: 54  AKIVEDSVTQVIEQRMTGIDHLRYISSTSDSFGNASITLTFNAEADPDIAQVQVQNKLQG 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +   +         +++             + +  +     D +       
Sbjct: 114 AMTLLPQEVQSQGVNVNKSSSGFLMVLGFVSTDGSLDKGDIADYVGANIQDPMSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L Q   T+  +       N        G            
Sbjct: 174 EIQLFGAQ-YAMRIWLDPLKLTQYSLTSLDVVAAIRSQNAQVSAGQLGGAPSVAGQELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   ++     F      +           
Sbjct: 233 TVSAQSRL-------------QTAEEFRKIILKSDISGANVFLGDVARVELGSESYAVVS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +   T        A ++         +           S   
Sbjct: 280 LYNGQPATGLAIKLATGANALDTASAVREKIAEMKPFFPQGLEVVYPYDTTPFVEQSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T A+LS+ G ++   ++  +V
Sbjct: 340 VVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLGTFAILSMAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G      R F+IT+  ++ +S+  A+ +  A+   +          I        +   
Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVLVALILTPALCATMLKPVKKGHGHIETGFFGWFNRTF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A    R+        +L        +         + +G +    +   
Sbjct: 520 DKLTNRYESSVAGIIKRSFRVMTIYVVLVIAVGWIFIRMPTAFLPDEDQGILFTQAILPT 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     LE +        +F  E+               Q + + +    + +   
Sbjct: 580 NSTQESTLKVLEKVSD------HFMAEEGVRSVFSVAGFSFAGQGQNMGIAFVGLKDWSE 633

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                         +  +  +    ++ + +
Sbjct: 634 REAPGMDVKSIAGRAMGVFGQMKDALVFAFV 664



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 81/246 (32%), Gaps = 6/246 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +   +           L        +++     +     ++    P
Sbjct: 259 NVFLGDVARVELGSESYAVVSLYNGQPATGLAIKLATGANALDTASAVREKIAEMKPFFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                           + I   +  ++ + + + + +++  + +   L     + + +  
Sbjct: 319 QGLEVVYPYDTTPFVEQSIEGVVHTLLEAIVLVFVIMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T    ++ G   N   + A++  IG  V+D +VV + +     +    +S  +   KS++
Sbjct: 379 TFAILSMAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPLEATRKSMD 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  V   +      +PMA   GS       F+I +   + ++   ++ +   +   +
Sbjct: 437 QITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSITIVSAMALSVLVALILTPALCATM 496

Query: 824 YDWRAK 829
                K
Sbjct: 497 LKPVKK 502



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 73/261 (27%), Gaps = 11/261 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +       V  S   +         +   N     N           
Sbjct: 774  QYRMQPGDLDSWYVRNNKGDMVPFSAFATGTWEFGSPRLERFNGLPSMNIQGATAPGFST 833

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++ K+            + E              +  + I  +  L+   + 
Sbjct: 834  GAAMEIMEDLAKQLPPGFGVEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 888

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 889  ESWSVPFAVVLVVPLGIIGALVAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEF 948

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 949  ---YEKGSGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISSGVGSGSQNAIGTAVLGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++ +    IF      + +  
Sbjct: 1006 MMSSTFLGIFFVPLFFVIVER 1026


>gi|229528479|ref|ZP_04417870.1| protein-export membrane protein SecD [Vibrio cholerae 12129(1)]
 gi|229334841|gb|EEO00327.1| protein-export membrane protein SecD [Vibrio cholerae 12129(1)]
          Length = 612

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 151/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRT 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   S++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVSVQAMGND---AFEVKTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|194435773|ref|ZP_03067876.1| multidrug resistance protein MdtF [Escherichia coli 101-1]
 gi|194425316|gb|EDX41300.1| multidrug resistance protein MdtF [Escherichia coli 101-1]
 gi|323959482|gb|EGB55137.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H489]
 gi|323971422|gb|EGB66660.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli TA007]
          Length = 1037

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|254285716|ref|ZP_04960679.1| protein-export membrane protein SecD [Vibrio cholerae AM-19226]
 gi|150424213|gb|EDN16151.1| protein-export membrane protein SecD [Vibrio cholerae AM-19226]
          Length = 612

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 151/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRT 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   S++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVSVQAMGND---AFEVKTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|325276475|ref|ZP_08142237.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           sp. TJI-51]
 gi|324098397|gb|EGB96481.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           sp. TJI-51]
          Length = 1050

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 60/548 (10%), Positives = 150/548 (27%), Gaps = 33/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSIL-----KLPINQYPSIAPPAI---------AIAVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFEQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMTKDDLANYIVSNMQDPISRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L +   T   +       N        G            
Sbjct: 174 DFQVFGAQ-YAMRIWLDPAKLNKFQLTPVDVKNAVAAQNVQVSSGQLGGLPAMPGTQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFEKILLKVNNDGSQVRLGDVAEVGLGGENYAISA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S S 
Sbjct: 280 QFNGKPASGLAVKLATGANALDTAKALRQTISDLEPFFPPGVKAVFPYDTTPVVTESISG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLLGTFGILAAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATKRSMEQIQGALVGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+IT+  ++ +S+  A+    A+   +++  K           F      
Sbjct: 460 SGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCATMLKPLKKGEHHTAKGGFFGWFNRN 519

Query: 538 IAIQFMRA 545
                   
Sbjct: 520 FDRSVNGY 527



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 87/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   IS Q      + L        +++   + L      +    
Sbjct: 258 SQVRLGDVAEVGLGGENYAISAQFNGKPASGLAVKLATGANALDTAKALRQTISDLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   I  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGVKAVFPYDTTPVVTESISGVIHTLIEAVVLVFLVMYLFLQNFRATIITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFGILAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++     +LPMA + GS       F+I +   + ++   ++     +   
Sbjct: 436 EQIQGALVGIALVLSAVLLPMAFFSGSTGVIYRQFSITIVSAMGLSVLVALIFTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 MLKPLKK 502



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 71/185 (38%), Gaps = 10/185 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            E + +       L +       G     +L    +  +  +   + +++    +   W  
Sbjct: 837  EAMAEVERIAGELPSGVGFSWTGMSYEEKLSGSQMPAL-FALSVLFVFLCLAALYESWSI 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  + L I   L   +L G+  ++  +  +LT IG +  + +++ +  ++   L+ 
Sbjct: 896  PIAVVLVVPLGIIGALIATSLRGLSNDVYFLVGLLTTIGLAAKNAILIVEFAKE---LHE 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  D   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A 
Sbjct: 953  EGRSLYDAAIEACRMRLRPIIMTSLAFILGVVPLTIASGAGAGSQHAIGTGVIGGMISAT 1012

Query: 810  SSSIF 814
              +IF
Sbjct: 1013 VLAIF 1017


>gi|329897044|ref|ZP_08271816.1| Protein-export membrane protein SecF (TC 3.A.5.1.1) [gamma
           proteobacterium IMCC3088]
 gi|328921484|gb|EGG28870.1| Protein-export membrane protein SecF (TC 3.A.5.1.1) [gamma
           proteobacterium IMCC3088]
          Length = 304

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 94/292 (32%), Positives = 163/292 (55%), Gaps = 5/292 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  R    G+SI   + S+  L    L++G+DF GG  + V      DL+V+R 
Sbjct: 1   MKIIDFMAWRRLAAGLSIALILASVVSLGVKELSWGLDFTGGTLVEVEYADSADLTVIRQ 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L+S         +F  +++ L+RL     D         ++     E      ++  E 
Sbjct: 61  TLQSRGYEGAIVVSFGTDRDVLIRLPAGTSDEQGAA----LLGILQNESEVEVELRRIEF 116

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++  EL  +G + ++++   +++YI  RF++ FALGA+  L  D+   LGFF+LF +
Sbjct: 117 VGPQVGEELREQGGLAMLLALGLVMLYIAFRFQFKFALGAVGALAHDVIIVLGFFSLFDL 176

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EF+LT +AA+L +IGYS+ND +VV DR+R+N +    +    ++I++S++ETLGR++ TS
Sbjct: 177 EFDLTVLAAILAVIGYSLNDTIVVSDRIRENFRKLRRTDPL-EVINQSLSETLGRTLVTS 235

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   + ++ +A  GG +I  FA+ +  G+ V   SSI++AA +L+ +   + 
Sbjct: 236 LTTLLVLISLAFVGGEMIHGFALALLVGVFVGTYSSIYVAANLLIALGVSKE 287


>gi|239994389|ref|ZP_04714913.1| RND family efflux transporter [Alteromonas macleodii ATCC 27126]
          Length = 1035

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 77/629 (12%), Positives = 183/629 (29%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   G++           L  +P   P                     
Sbjct: 9   KRPVFATVINLLLIIFGIVA-----FTMLSLREYPDIDPPIV---------SVSTTYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S ++       + R  ++ IT+ F  SR  +  A+ V   +  
Sbjct: 55  SANIVETRITQLLEDRISGIEGIKNVTSTSRNGRSDITIEFKLSRDIDAAANDVRERVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L        +      E ++V        +  + +E +    R  +D++ I +   
Sbjct: 115 ALNNLPDQADPPEVSKANSDESAVVWYNLRSTNL--NTMELTDYAERVLVDRLSIVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D + +     T   +                          N  
Sbjct: 173 RVQIGGGRRYAMKVFLDRNAMAARGITVNDVEQVIRAE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   +VE +  +     A                             ++           
Sbjct: 214 LPAGEVESTDRNFEVRVARTFLTPDDFAALTVAIGDNGYLVRLGEIAHVELTAEDDETEF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +++ +       A      + A        +    +      S   
Sbjct: 274 RGDGVNMIGLGIIKQSKANTLDVARAAKAQIERIEATLPDNIFIVPSYDSSVFIEASIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   +V+IV+++ +   +  L+   ++ +++I    ++  LG ++ L ++  +V
Sbjct: 334 VYETLGIAMLMVVIVIYLFLGNIRATLIPAVTVPVSIIAAFIVMYALGFSINLLTLLAMV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +   G       +  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVVLENIYRRIEMGEPPILAAYRGAKEVGFAVIATTLVLISVFVPLVFLE 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA+ +  ++  S FTA+++   M   I++ +   S   + + + F   +  
Sbjct: 454 GNIGRLFTEFALAIAAAVAFSSFTALTLSPMMASKILKKRTRSSGFGSWMDKQFSKLENG 513

Query: 539 AIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           + ++I                   + +G   + + A        
Sbjct: 514 YFNTLGKTLHQPILMLLMLAIAIVALVQLSEKVPSEFVPKEDRGNFFILMNAQEGASFES 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
              NLE ++   + ++        LVR  
Sbjct: 574 NAKNLEKIESILMPYRESGKINRLLVRTP 602



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 70/210 (33%), Gaps = 4/210 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +     + +  +  F+        L  ++    +++   R  +   ++I   +P 
Sbjct: 254 VRLGEIAHVELTAEDDETEFRGDGVNMIGLGIIKQSKANTLDVARAAKAQIERIEATLPD 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +                I +    + I+ + ++I I++        L    T+ + I   
Sbjct: 314 NIFIVPSYDSSVFIEASIDEVYETLGIAMLMVVIVIYLFLGNIRATLIPAVTVPVSIIAA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   NL  + A++  IG  V+D +VV + +    +             +   E
Sbjct: 374 FIVMYALGFSINLLTLLAMVLAIGLVVDDAIVVLENI---YRRIEMGEPPILAAYRGAKE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                + T++      +P+    G++   F
Sbjct: 431 VGFAVIATTLVLISVFVPLVFLEGNIGRLF 460



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 62/160 (38%), Gaps = 7/160 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +   +++     + +  +F+ W   L  + T+ L +           +  N+ +   ++ 
Sbjct: 853  VYVFMLALAVTYLILAAQFESWVHPLVIMLTVPLALVGAYIGLFFSDMTINIYSQIGLVM 912

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG +  + +++ +      +L    + F   + ++  + L   V T      S LP+ +
Sbjct: 913  LIGLAAKNGILIVEFAN---QLRDAGMEFEYALKRAAAQRLRPIVMTGFTTVFSSLPLVL 969

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G        + +  G++V+A  ++++      ++  
Sbjct: 970  ASGPGAESRMVIGMVIFSGVLVSAFMTLYVVPTAYSWLAR 1009


>gi|119713219|gb|ABL97286.1| protein-export membrane protein SecD [uncultured marine bacterium
           HF10_05C07]
          Length = 592

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 166/525 (31%), Positives = 272/525 (51%), Gaps = 45/525 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  + L    PN+L                + LGLDLRGG + ++EVD D  +   L+ 
Sbjct: 86  FVVALNLAANTPNWLKSLNA---------KPMKLGLDLRGGVNFLMEVDTDLLIETKLES 136

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
            +  LR+ L+   I V S+   +NKI L+ +D    EN    V             D   
Sbjct: 137 TASVLRNSLRDARIKVNSINVERNKIVLNLSDEEKLENFNKIV------------SDIGI 184

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
             +  +      +  S   I+  I +A+ Q++  +R R++++G+SE  +QR G  RI +Q
Sbjct: 185 LDVSFSQNLNYELSFSDQEIEDTIEYAVLQNLTTLRNRVNELGVSEPVVQREGEKRISVQ 244

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           LPG QD +  ++++G TA + F     NNS    +    +     G    +E K+ ISG 
Sbjct: 245 LPGIQDTAEAKKIIGKTANLEFRLEAKNNSLASRVETFPYR----GLNTKLEKKIIISGD 300

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------ 294
            ++ A+  FD       V+IS D  G  +    TR+N+G  +                  
Sbjct: 301 RVSDASVGFDENGFPQ-VNISLDSDGGAQMHRATRNNVGVRMAVLFVEKKIRSLNDNGAT 359

Query: 295 -AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                  + + +    Q+  + + +I+G  +   A  LA +LRAG+L   +N VEE  +G
Sbjct: 360 SIKNYYDKRIISLATIQSALANQFRITGLDSPAEASELALLLRAGALAAPMNFVEEGTIG 419

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG+D+I  G  +++ GL L+++FM+  Y  +GL+A+ ++ LN++L  +++S+L ATLT
Sbjct: 420 PSLGADNIRLGINSLILGLSLVLIFMVFYYKGFGLIANLAVLLNLVLIASVMSILSATLT 479

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL IG+AVD+N+L+  RIREE ++N     ++  G+ RA+ TI D+N+T LI 
Sbjct: 480 LPGIAGIVLTIGMAVDANVLIFSRIREELQRNLKPLEAITSGYDRAFITIVDANLTTLIV 539

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
            ++L+  G G ++GFAIT+ + IL SMFTAI   R ++ F+   +
Sbjct: 540 ALILYIVGTGPIQGFAITLSVGILTSMFTAILFTRMLVFFVYGRR 584



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 95/267 (35%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                  +  G     +   + +               D    +    ++ L       G
Sbjct: 328 QMHRATRNNVGVRMAVLFVEKKIRSLNDNGATSIKNYYDKRIISLATIQSALANQFRITG 387

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                      +  +   +           +GP +  + IR GI  +I+    +LI++  
Sbjct: 388 LDSPAEASELALLLRAGALAAPMNFVEEGTIGPSLGADNIRLGINSLILGLSLVLIFMVF 447

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            +K  F L A   ++L++       ++      L  +A ++  IG +V+  V+++ R+R+
Sbjct: 448 YYK-GFGLIANLAVLLNLVLIASVMSILSATLTLPGIAGIVLTIGMAVDANVLIFSRIRE 506

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++         + I    +      V  ++   I  L + + G   I  FAI ++ GI+
Sbjct: 507 ELQRNLK---PLEAITSGYDRAFITIVDANLTTLIVALILYIVGTGPIQGFAITLSVGIL 563

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I     ++ F+Y  R    +I
Sbjct: 564 TSMFTAILFTRMLVFFVYGRRRNVEKI 590


>gi|190893187|ref|YP_001979729.1| multidrug-efflux system, acriflavin resistance protein [Rhizobium
           etli CIAT 652]
 gi|190698466|gb|ACE92551.1| multidrug-efflux system, acriflavin resistance protein [Rhizobium
           etli CIAT 652]
          Length = 1061

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 73/587 (12%), Positives = 168/587 (28%), Gaps = 39/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +   +G +        Q  + ++P   P               +V+    
Sbjct: 10  RPIFAAVISILFLVVGGIA-----YTQLPVSQYPEIAPPT-------------IVVRTSY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     +    +T++F      + +   V  
Sbjct: 52  PGADPQTIADTVSTPLEQQINGVEDMLYMSSYSSADGAMSLTITFKLGTDLDKVQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + T       +++            +  S     +  D +   
Sbjct: 112 RVSIALPRLPEEVQRLGVTTDKSSPDLMMVVHLLSPSHRYDQLYVSNYARNRIRDVLVRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     T+  +       N    G   G   +   +
Sbjct: 172 DGVGDVQIFGERQYSMRIWLDPEKLSAYGMTSDDVVSALRDQNVQVSGGKIGAPPVTGKN 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y V      S +                   I       R         I       
Sbjct: 232 AFEYTVRTDGRFSDVREFRY-------------VIVKSTGAGRLVQLQDVARIELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +   T      L   +     P     +          
Sbjct: 279 VTNSYLNNDPAVALGIFARPGTNALDTAHQVQTLMKDISQNFPPGLEYRIVYDTTEFISD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T A  A LV IV+ + +   +  ++   +I +++I T A+L   G +L + ++
Sbjct: 339 SINEVYRTIAEAAILVAIVVLVFLQSWRTAIIPIVAIPVSLIGTFAILLAFGFSLNMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  +   +  +      + +   ++  +   V  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNLARGMTAKQASHVTMDEVGTAVVAISLVLIAVFVPT 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   R FA+T+ ++  IS   ++++  A+   +++     +  +N  +R    
Sbjct: 459 AFIPGISGQFYRQFAVTISVTTAISALNSLTLSPALAGILLKPHDHGTKRLNIATRLGRG 518

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                 +       G    +   + S   L    L +         +
Sbjct: 519 LADGFNRGFDRMSSGYSWVVRHLVSSWIGLTCSMLAFAGLLGATWYI 565



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 58/437 (13%), Positives = 133/437 (30%), Gaps = 20/437 (4%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
                   AG          +  +V    +    + +    + +      Y  +       
Sbjct: 614  VGNAVQFAGFSGATFTNASNAGVVFVPFKSFAEREEGGENA-NKIIGELYMKLQSIQEAF 672

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +IA       G G   GF + +       M   + + R MM      + +  +       
Sbjct: 673  IIAIPPPSVRGVGNSGGFKMQISDLENADMTRVLGLARQMMGAAATTEGLTGVFTTFSDA 732

Query: 531  FFLIPDCIAIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   I     R            +SI   +  +      G  Y +  +   Q  +  
Sbjct: 733  SPQYFLSIDRDKARFLNVPIPNIFNALSINLGVAYVNDFNAFGRVYQVRAQADRQYRMDK 792

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGE----KNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               + L V  +    + +G +            + + + +      +           KK
Sbjct: 793  EDILSLKVRSATGALVPLGTLMDIQDSSGPALVQRYNMYVSVPLQGNPTPGTSTGDAIKK 852

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAI 697
            + E+        T     +++ +    G   V I +   + +++ +      W   L  I
Sbjct: 853  MEELAAKILPPGTTFEWTELAYQETHTGNTAVYIFALSVIFVFLALAAQYESWVLPLAII 912

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
              + L +   L   +L G++ N+     ++ LIG +  + +++ +  R   +      S 
Sbjct: 913  LIVPLAVLAALIGVSLRGMDNNVLTQIGLIVLIGLAAKNAILIVEFAR---QAEDEGKSP 969

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             D   ++ +  L   + T+ A    VLP+A+    G  +  S    +  G++      +F
Sbjct: 970  VDAAIEASHLRLRPILMTAFAFIFGVLPLAIATGPGAEMRQSLGTAVFSGMLGVTFFGLF 1029

Query: 815  IAAPILLFIYDWRAKNA 831
            +     + +  WR   +
Sbjct: 1030 LTPVFYVVLRGWRRNRS 1046



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 79/203 (38%), Gaps = 9/203 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +     +++ + +     +    + +T         E+ R      I+ AI +L+++ 
Sbjct: 304 DTAHQVQTLMKDISQNFPPGLEYRIVYDTTEFISDSINEVYRTIAEAAILVAIVVLVFLQ 363

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  A+  I  + + +  T      FG   N+  +  ++  IG  V+D +VV + + 
Sbjct: 364 ---SWRTAIIPIVAIPVSLIGTFAILLAFGFSLNMLTLFGLVLAIGIVVDDAIVVVENVE 420

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +N+      ++ +     +++E     V  S+      +P A      G     FA+ ++
Sbjct: 421 RNLA---RGMTAKQASHVTMDEVGTAVVAISLVLIAVFVPTAFIPGISGQFYRQFAVTIS 477

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
               ++A +S+ ++  +   +  
Sbjct: 478 VTTAISALNSLTLSPALAGILLK 500


>gi|322833945|ref|YP_004213972.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
 gi|321169146|gb|ADW74845.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
          Length = 1051

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 79/689 (11%), Positives = 196/689 (28%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L           ++++P   P              ++ +    
Sbjct: 8   RPIFAWVLAIIISLSGALAIYF-----LPVEQYPDLAPP-------------NVRISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    +++ITLSF           +V  
Sbjct: 50  PGASAQTLENTVTQIIEQNMTGLDNLMYMSSQSSNDGKSQITLSFTAGTDPNEALQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  D +   +  +   + ++++             + +  +     D +   
Sbjct: 110 QLQQALKRLPQDVQTQGVTVSKTGDTNLMMVAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     TTA +       N+       G     D  
Sbjct: 170 PGVGSIDAYGSQ-YAMRIWLDPDKLNNYQLTTADVVTAIKAQNSQVAVGQLGGAPSVDFQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +             +        IG      
Sbjct: 229 ALNATINAQAQL-------------QTPEQFRQITLKVNQDGSQVKLGDVSTIGLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 ALLSRYNGQAASGMGVKLASGANELQTDKAVRARLDELSHYYPHGLKAEIAYETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 AITDVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLHQFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +  S +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQIQSALVGITMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+F A+++  A+   I           +       
Sbjct: 456 MAFFGGTTGAIYRQFSITIVSAMVLSVFVALTLTPALCSTILKPVAQGHHHGKRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + +A     +  + +G + L ++ ++  +        ++ +G   + V
Sbjct: 516 NRMFDRNARRYENGVARILRNSLRYMLGYAALVALLAVMFIKLPTSFLPMEDRGVFTVQV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L   +  +E ++   ++    D    F        G+     R+   +     
Sbjct: 576 QLPPGSTLQQTQKVVEKVEKYFLTEDKKDVLSVFSTIGAGPGGNGQNVARMFVRLTPWDA 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +         K   ++    ++ 
Sbjct: 636 RTGEGDSSFALIERATKAFNKITEARVIA 664



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +   +  +      + +        + +   + +     +++   
Sbjct: 258 SQVKLGDVSTIGLGAENYALLSRYNGQAASGMGVKLASGANELQTDKAVRARLDELSHYY 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I   +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PHGLKAEIAYETTPFVKAAITDVVKTLFEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T      FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFAVLHQFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 436 GQIQSALVGITMVLSAVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVFVALTLTPAL 492



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 8/177 (4%)

Query: 655  EIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
            E  G      L       +  IS + + + +   ++ W      +  + L +   +    
Sbjct: 856  EWTGLSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVLGAVIATW 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G+E ++     +LT+IG S  + +++ +       L        +   ++    L   
Sbjct: 916  LRGLENDVYFQVGMLTIIGLSAKNAILIVEFAND---LNVRGKELLEATLEAARMRLRPI 972

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + TS+A    VLPMA     G     +    +  G++ A   +IF      + I   
Sbjct: 973  LMTSLAFVFGVLPMATSMGAGSGSQHAVGTGVIGGMISATVLAIFFVPLFFVLIRRR 1029


>gi|218676902|ref|YP_002395721.1| putative multidrug efflux pump [Vibrio splendidus LGP32]
 gi|218325170|emb|CAV27070.1| putative multidrug efflux pump [Vibrio splendidus LGP32]
          Length = 1050

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 73/692 (10%), Positives = 191/692 (27%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPKISPP-------------SVSVSAF 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSANDGSYNLNVTFDVGTDADMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++          +       +     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPNGEYNDQFLINYVNLNIKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ ++      N        G     ++
Sbjct: 170 VKGISEVNVLGGGEYAMRVWLDPEKMANLNITTSDVNRALAEQNAQVAAGRIGAAPYNNA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ETADEFENVVLRANQDGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    +   L                     
Sbjct: 277 YDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSKNFPEGVAYEASYDTTLFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++ + G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAIMQMTGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATLIAMKEVTGPIVTSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           I   +L    G   R FA+T+ ++++IS   A+++  A+   +         +  ++ + 
Sbjct: 457 IPVAMLPGITGIMYRQFALTICIAVVISSINALTLSPALCSLVLKQGGGNTARWYQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
              S              +         +  +  +     T       + KG + + V  
Sbjct: 517 GLESVTNKYGQIAGFLVKKGVLLFTFFVVALAAVTYFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS      E L          DG              +     +   +       
Sbjct: 577 PDAASLSRTEDVTEQLLEMVEQEPGVDGVTLVNGYAFMTGASASNGASMFIKLHDWDMRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  + + +  +I+     +    ++ + 
Sbjct: 637 ALD-GQHSAQAISQRINGRAATELPQAIVFAM 667



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 85/235 (36%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D + +    + + +        +++   + +  +   +++  P 
Sbjct: 262 VYLKDVARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSKNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                          E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GVAYEASYDTTLFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N   +  ++  IG  V+D ++V + +         +IS R     ++ E
Sbjct: 382 FAIMQMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLIAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V +++      +P+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAVVISSINALTLSPAL 495



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/447 (13%), Positives = 122/447 (27%), Gaps = 26/447 (5%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDS-NILVNERIREENRKNQSVFCSLDMGFS-RAYSTIF 464
            LL      P + G+ L  G A  +     N         +  +  +LD   S +A S   
Sbjct: 592  LLEMVEQEPGVDGVTLVNGYAFMTGASASNGASMFIKLHDWDMRNALDGQHSAQAISQRI 651

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
            +      +   ++F  G  AV G     G   ++      S   +   M   I    K  
Sbjct: 652  NGRAATELPQAIVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMNDVIAEANKQP 711

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             I     +    +P                            L +  +N    F    ++
Sbjct: 712  EISHTFSTFRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSMYVNDFTMFGKNFRV 771

Query: 582  GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + A+              V  S       S  +        D    + +          
Sbjct: 772  TMQADSEHRSSMDDLQRFHVRSSNGEMIPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQP 831

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
            A           +  +      Q  +     ++ + +  G   +   +   + IY   + 
Sbjct: 832  APGYSSGDAIAAMERVAADVLPQGYQYEWTGMAYQEVLAGNQAIFAFALALIFIYLFMVA 891

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   +  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892  QYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
              ++         D   K           TS +  + + P+    G+      S  I + 
Sbjct: 952  --VEREEKDAPIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLI 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++    +  F+      F+   R K
Sbjct: 1010 GGLLCVLLAGTFLIPGFYAFVQRKREK 1036


>gi|197295433|ref|YP_002153974.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
 gi|195944912|emb|CAR57524.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
          Length = 1065

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 69/688 (10%), Positives = 184/688 (26%), Gaps = 48/688 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G             + ++P+  P               + +   
Sbjct: 7   KRPILAWVMAIVIMLVGAAAV-----TSLPVAQYPTIAPP-------------SVQVTAT 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L        +   S    Q  ITL+F      +    +V 
Sbjct: 49  YPGASADTVAATVTQVIEQKLSGIDNVLYMSSTSSSAGQATITLTFNPGTNPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  +         +++   +      ++++    I  +  D +  
Sbjct: 109 NKVTQATPTLPQTVQEQGVQVAKASTSFLMIVALSSPGGTWNSVDLGNIIATRIEDPLAQ 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P +LR      + ++      N        G     DS
Sbjct: 169 LNGVGDVTLFGAQ-HAMRIWLNPVKLRSFGLAPSDVTTAITNQNVELSTGQVGGSPATDS 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     ++                +    +        R        +      
Sbjct: 228 QAINATIRSSSLLTSAD-------------QFADILLRVNSDGSRVLLKDVARVEVGGDS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L     +          +            A ++                    
Sbjct: 275 YDTASRLNGKPASALAIKLATGANALDAANAVRAKLAEIQLQLPKDVAISYPYDTTPFVR 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+    + + ++ T  ++S++G ++ + S
Sbjct: 335 ISIEEVVKTLFEAVVLVFLVMYLFLQNVRATLIPTLVVPVALLGTFGVMSMIGFSINVLS 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     + +     +      +    +           +
Sbjct: 395 MFAMVLAIGLLVDDAIVVVENVERIMSEEKLGPKEATHKAMGQITGALVGVTTVLTAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F+IT+  ++L+S+  A+++  A+   +++   ++         +F
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMLLSVMLALTLTPALCATLLKRADVEHHAKRGFFGWF 514

Query: 533 LIP-------DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        ++  + AR     +        + LL+    +  +  +      V  
Sbjct: 515 NRWFAKRNAGYSSSLARVVARPARYMLLYGAIAGVVALLYVTLPSSFLPDEDQGYFIVSI 574

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           + P      R+      +     ++  G K  +    +          +  +  K  +  
Sbjct: 575 SAPAGTPASRTLKTVEAVEQYVLKDEPGVKQVIAINGFSFNGQGQNNAIAFVTLKDWSLR 634

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673
               ++        +         I  +
Sbjct: 635 GSRDSVSAIIARANQHFAGNRDARIFVL 662



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 89/246 (36%), Gaps = 10/246 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V          D + +      + L        +++     +     +I   +
Sbjct: 258 SRVLLKDVARVEVGGDSYDTASRLNGKPASALAIKLATGANALDAANAVRAKLAEIQLQL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         R  I + +  +  + + + + +++  +     L     + + + 
Sbjct: 318 PKDVAISYPYDTTPFVRISIEEVVKTLFEAVVLVFLVMYLFLQNVRATLIPTLVVPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  ++ G   N+ ++ A++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFGVMSMIGFSINVLSMFAMVLAIGLLVDDAIVVVENV--ERIMSEEKLGPKEATHKAM 435

Query: 766 NETLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +  G  V   +   +    +PMA +GGS       F+I +   ++++   ++ +   + 
Sbjct: 436 GQITGALV--GVTTVLTAVFIPMAFFGGSTGAIYRQFSITIVSAMLLSVMLALTLTPALC 493

Query: 821 LFIYDW 826
             +   
Sbjct: 494 ATLLKR 499



 Score = 45.8 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 65/198 (32%), Gaps = 9/198 (4%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            +    +PG S  +         +                  +   +      + +++  +
Sbjct: 843  ISAATRPGVSTGEAMTAVEQLARKLPPGFAVEWTGQSYQEKQAGSQATVLYAISLVVVFL 902

Query: 679  AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
             +     +   W   L  +  + L +   L      G+  ++     +L  IG S  + +
Sbjct: 903  CLAG---LYESWSIPLAVLLVVPLGVLGALLAAHGRGLSNDIYFKVGLLATIGLSTKNAI 959

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ +  +    L     S  D + ++ +  L   + TS+A    VLP+ +    G     
Sbjct: 960  LIVEFAKD---LQAQGRSLVDAVLEAAHMRLRPILMTSLAFVFGVLPLVISTGAGAGARH 1016

Query: 796  SFAIPMAFGIVVAASSSI 813
            +    +  G++ A   +I
Sbjct: 1017 AIGTGVTGGMIAATVLAI 1034


>gi|183600068|ref|ZP_02961561.1| hypothetical protein PROSTU_03600 [Providencia stuartii ATCC 25827]
 gi|188022353|gb|EDU60393.1| hypothetical protein PROSTU_03600 [Providencia stuartii ATCC 25827]
          Length = 1053

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 183/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIITMLAGLLAII-----KLPVAQYPTIAPP-------------SVSISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       I L+F      +    +V  
Sbjct: 50  PGADASTVQNTVTQVIEQNMNGIDNLVYMSSTSDSSGSANIMLTFEAGTDGDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++            + +  +     D +   
Sbjct: 110 KLQLAMPLLPQEVQQQGISVDKSTSSFLMVAGFVSADGSMGQYDIADYVGSNIKDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P  L +   TT  +     + NN       G        
Sbjct: 170 NGVGETQLFGTP-YAMRIWLKPEMLVKYNMTTTDVINAIKVQNNQVAAGQLGGTPPVAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 RLNVSIIAQTRLNN-------------PEEFANILLRVNKDGSQVRLKDVATVELGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A +          +           
Sbjct: 276 STIARFNGKAAAGIGIKLATGANALDTANNVRAALANMEPFFPEGLEIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV++V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SINEVVKTLVEAIMLVVVVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLSPKEATKKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   I           +       
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMILSVLVAMILTPALCATILKPIKKGSHGSQKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +     +     D ++        + +   +L +  ++  +         + +G     V
Sbjct: 516 NRTFEKQAHHYTDSVSRMLNGTGRYLLIYLVLVAGMALMFIRLPSSFLPEEDQGVFLAMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      ++ L+ +     + +  + E  F V      G          ++K    
Sbjct: 576 QLPPGSTQEQTQAVLDEVNTYFHTKEERNVESVFTVGGFSFAGQGQNMGLAFVVLKNWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + ++           +     I  
Sbjct: 636 RKGDENHVEAIVGRANAALSQKQEALIYA 664



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 88/241 (36%), Gaps = 10/241 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V       + +   N  ++   +   +   G    L         +      L  ++  
Sbjct: 259 QVRLKDVATVELGAENYSTIARFN--GKAAAGIGIKLATGANALDTANNVRAALANMEPF 316

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             E + +    +T         E+++  +  +++  + M +++         L     + 
Sbjct: 317 FPEGLEIVYPYDTTPFVKISINEVVKTLVEAIMLVVVVMYLFLQ---NIRATLIPTIAVP 373

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T    A FG   N   + A++  IG  V+D +VV + +     +    +S ++  
Sbjct: 374 VVLLGTFAVLAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            KS+ +  G  V  +M      +PMA +GGS       F+I +   ++++   ++ +   
Sbjct: 432 KKSMGQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMILSVLVAMILTPA 491

Query: 819 I 819
           +
Sbjct: 492 L 492



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 82/236 (34%), Gaps = 7/236 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L+  Q             N +  +  Q   +  Q+    M+  +      L      E
Sbjct: 802  AFLDESQDPWKYGSPRLERYNGVPSMNIQGQAAFGQSTGDAMLMMEKLTTENLPKGIGYE 861

Query: 656  IVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
              G      L       +  IS I + + +   ++ W      +  + L I   L F ++
Sbjct: 862  WTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSVPFSVMLVVPLGIIGALLFTSV 921

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+  ++     +LT IG S  + +++ +  +  M+         +   +++   L   +
Sbjct: 922  RGLSNDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LVEATLEAVKMRLRPIL 979

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             TS+A  + V+P+      G +   S    +  G+  A S +IF      + I   
Sbjct: 980  MTSLAFMLGVIPLVFSNGAGSAAQNSVGTGVLGGMFAATSLAIFFVPVFYVVIRRR 1035


>gi|86145750|ref|ZP_01064079.1| putative acriflavin resistence protein [Vibrio sp. MED222]
 gi|85836449|gb|EAQ54578.1| putative acriflavin resistence protein [Vibrio sp. MED222]
          Length = 1050

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 73/692 (10%), Positives = 191/692 (27%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPKISPP-------------SVSVSAF 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSANDGSYNLNVTFDVGTDADMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++          +       +     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPNGEYNDQFLINYVNLNIKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++  L  TT+ ++      N        G     ++
Sbjct: 170 VKGISEVNVLGGGEYAMRVWLDPEKMANLNITTSDVNRALAEQNVQVAAGRIGAAPYNNA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ETADEFENVVLRANQDGSTVYLKDVARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    +   L                     
Sbjct: 277 YDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSKNFPEGVAYEASYDTTLFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++ + G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATLIAMKEVTGPIVTSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           I   +L    G   R FA+T+ ++++IS   A+++  A+   +         +  ++ + 
Sbjct: 457 IPVAMLPGITGIMYRQFALTICIAVVISSINALTLSPALCSLVLKQGGGNTARWYQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
              S              +         +  +  +     T       + KG + + V  
Sbjct: 517 GLESVTSKYGQIAGFLVKKGVLLFTFFVVALAAVTYFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS      E L          DG              +     +   +       
Sbjct: 577 PDAASLSRTEDVTEQLLEMVEQEPGVDGVTLVNGYAFMTGASASNGASMFIKLHDWEMRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  + + +  +I+     +    ++ + 
Sbjct: 637 ALD-GQHSAQAISQRINGRAATELPQAIVFAM 667



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 85/235 (36%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D + +    + + +        +++   + +  +   +++  P 
Sbjct: 262 VYLKDVARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSKNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                          E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GVAYEASYDTTLFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N   +  ++  IG  V+D ++V + +         +IS R     ++ E
Sbjct: 382 FAVMQMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLIAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V +++      +P+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAVVISSINALTLSPAL 495



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/447 (12%), Positives = 119/447 (26%), Gaps = 26/447 (5%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            LL      P + G+ L  G A  +    +       + +     +   G   A +     
Sbjct: 592  LLEMVEQEPGVDGVTLVNGYAFMTGASASNGASMFIKLHDWEMRNALDGQHSAQAISQRI 651

Query: 467  NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
            N      +   ++F  G  AV G     G   ++      S   +   M   I    K  
Sbjct: 652  NGRAATELPQAIVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMNDVIAEANKQP 711

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             I     +    +P                            L +  +N    F    ++
Sbjct: 712  EISHTFSTFRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSMYVNDFTMFGKNFRV 771

Query: 582  GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + A+              V  S       S  +        D    + +          
Sbjct: 772  TMQADSEHRSSMDDLQRFHVRSSNGEMIPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQP 831

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
            A           +  +      Q  +     ++ + +  G   +   +   + IY   + 
Sbjct: 832  APGYSSGDAIAAMERVAADVLPQGYQYEWTGMAYQEVLAGNQAIFAFALALIFIYLFMVA 891

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   +  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892  QYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
              ++         D   K           TS +  + + P+    G+      S  I + 
Sbjct: 952  --VEREEKDAPIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLI 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++    +  F+      F+   R K
Sbjct: 1010 GGLLCVLLAGTFLIPGFYAFVQRKREK 1036


>gi|253687464|ref|YP_003016654.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251754042|gb|ACT12118.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 1042

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 64/574 (11%), Positives = 155/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  M+   GLL  +     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVLAIMVMLTGLLAIV-----KLPIAQYPTIAPPA-------------IDVTATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S      +ITL+F      +    +V  
Sbjct: 50  PGADASTLQDSVTQVIEQNMNGIDNLMYMSSSSDSSGTVQITLTFEAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVNVQKSSSSFLMVAAFISEDGKMSQEDIADYVAANVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++    + NN       G        
Sbjct: 170 SGVGDAQLFGSQ-YAMRIWLDPNKLNNYQLTAGDVTAAIRVQNNQIAAGQLGGAPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 QLNASIIAQTRLNSAE-------------EFSKILLKVNADGSQVRLKDVARVELGAEGY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T                     +           
Sbjct: 276 DVIARFNGKPAAGIGIKLATGANALDTATAVKEALTKAEEFFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F+IT+  ++++S+  A+ +  A+   +     +K I     S    
Sbjct: 456 MAFTGGSTGAIYRQFSITIVSAMVLSVMVALILTPALCATL-----LKPIAKGDHSEKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++              +   L  +
Sbjct: 511 FFGWFNRLFEKSTHHYTDSVANILRSTGRYLVIY 544



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +        +        +++     ++    K  E  
Sbjct: 258 SQVRLKDVARVELGAEGYDVIARFNGKPAAGIGIKLATGANALDTATAVKEALTKAEEFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA  GGS       F+I +   +V++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFTGGSTGAIYRQFSITIVSAMVLSVMVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +    + +  L      E  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMALMESFVAQLPQGIGYEWTGMSYQERLSGNQAPAIYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L I   L    + G+E ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGIIGALIAANMTGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLDAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|260857618|ref|YP_003231509.1| multidrug transporter MdtF, RpoS-dependent [Escherichia coli
           O26:H11 str. 11368]
 gi|257756267|dbj|BAI27769.1| multidrug transporter MdtF, RpoS-dependent [Escherichia coli
           O26:H11 str. 11368]
          Length = 1037

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 82/230 (35%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L     TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPIQMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|269837755|ref|YP_003319983.1| protein-export membrane protein SecF [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787018|gb|ACZ39161.1| protein-export membrane protein SecF [Sphaerobacter thermophilus
           DSM 20745]
          Length = 316

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 74/300 (24%), Positives = 141/300 (47%), Gaps = 15/300 (5%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I  +  R+W   +S+L  +  +  L  +GL   IDF GG    +  +R V    V+  L 
Sbjct: 2   IDIVGKRYWWFLLSVLVILPGLVSLAVNGLRVSIDFTGGTLWELQMSRTVQPGEVQRVLA 61

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +        Q  +     +   + Q G           +   + +     T    E VGP
Sbjct: 62  ANGYDGSMVQTSEDNVVLIRTKEIQEGSEA-----KNQLLTALQDEFGQVTELRLESVGP 116

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGFFALF 714
            +  E+  + I+ V +++I +L+YI   F+     + +   AI  ++ D+   LG  ++ 
Sbjct: 117 TLGTEIRNRAIIAVALASIGILLYIAFAFRNTQNPFLYGTAAIIAMLHDVAILLGLVSIL 176

Query: 715 GI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           G     E +   + AVLT+IG+SV+D +VV+DR+R+N+  +    +F + ++ S+ +TL 
Sbjct: 177 GWLRGVEVDALFITAVLTVIGFSVHDTIVVFDRIRENLA-HKVGETFEETVNYSVVQTLV 235

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           RS+ TS+   + +  + ++GG    +F + +  GI+    SSIF A+ I++   +   + 
Sbjct: 236 RSLNTSITTILPLAALYLFGGETTKTFVLVLLVGIIAGTYSSIFNASQIVVAWENGEIQR 295


>gi|209747514|gb|ACI72064.1| putative integral transmembrane protein [Escherichia coli]
          Length = 628

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 63/522 (12%), Positives = 148/522 (28%), Gaps = 41/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
             S             +    D   L +   T   +     + N        G       
Sbjct: 169 LNSVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNAQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL 496



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|189345571|ref|YP_001942100.1| preprotein translocase subunit SecF [Chlorobium limicola DSM 245]
 gi|189339718|gb|ACD89121.1| protein-export membrane protein SecF [Chlorobium limicola DSM 245]
          Length = 311

 Score =  190 bits (482), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 147/309 (47%), Gaps = 11/309 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I    +  F++ R     IS++  +  I  L   GLNYGIDF+GG ++ +   + V++
Sbjct: 1   MRIFHKTSFNFIKHRKIAYVISMVLLLSGIVSLAFRGLNYGIDFRGGSEVVIRFEKNVEV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             VR+ L+   +     Q      +    L         + + L               I
Sbjct: 61  GSVRAVLKEAGVSGTLKQY---GIDRSFLLSTVFSGQTNELKALVSNAFNARFPDNRHEI 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP I+ +L    +  ++ +  A+L+Y+ IRF+  FA   +  +  D+   LG F
Sbjct: 118 VRIDSVGPSIASDLKWSALKALLGALAAILLYVGIRFELKFAAAGVVAIFHDVLTVLGLF 177

Query: 712 ALFG-------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           ++ G       +E + + +AA LT+ GYS+ D VVVYDR+R+ ++       +  + + S
Sbjct: 178 SILGGLFAFMPLEMDQSIIAAFLTVAGYSITDTVVVYDRIRERIR-GRKPSEYEAIFNDS 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +N+TL R++ TS    I+VL + ++ G  I  FA  +  GI++   SSIF+AAPI+    
Sbjct: 237 MNQTLSRTIITSGTTLITVLILFIFAGPAIRGFAFAVFTGILIGTYSSIFVAAPIVYDWL 296

Query: 825 DWRAKNARI 833
                + R+
Sbjct: 297 KATKSSVRL 305


>gi|237724289|ref|ZP_04554770.1| multidrug efflux membrane fusion protein [Bacteroides sp. D4]
 gi|229437477|gb|EEO47554.1| multidrug efflux membrane fusion protein [Bacteroides dorei
           5_1_36/D4]
          Length = 1011

 Score =  190 bits (482), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 81/628 (12%), Positives = 177/628 (28%), Gaps = 48/628 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L  +I   GL+           +  +PS                  +     
Sbjct: 9   RRPVLATVLTIIILLFGLI-----GYNTLGVREYPSVDNPI-----------ISVTCSYS 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    ++  + +          +Q Q +IT+ F  S   E  A+ V   +
Sbjct: 53  GANADVIENQITEPLEQNINGIPGIRSLSSVSQQGQCRITVEFELSVDLETAANDVRDKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  D     +         I++     D      +E S        +Q+     
Sbjct: 113 SRAQRYLPRDCDPPTVSKADADATPILMVAIQSDS--RSLLELSEIADLTVKEQLQTISD 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP+++     T   +                           
Sbjct: 171 VSSVSIWGEKRYSMRLWLDPTKMAGYGITPVDVKNAITNE-------------------- 210

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                     T K   +I   E+G R              A +  
Sbjct: 211 NIELPSGSIEGNTVELTLRTMGQMHTAKEFNNIILKEVGGRVVRFSDIGYAELGPADIKS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +    +   +   +   +     +        ++              N      S 
Sbjct: 271 YMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K T      LV+I++F+ +   +  L+    I +++I    ++ + G ++ + ++  
Sbjct: 331 DEVKSTVYEAFVLVIIIIFLFLRDWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I++ E I     +    F +   G    +  +  + IT +   + + F
Sbjct: 391 VVLSVGLVVDDAIVMTENIYIRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVF 450

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R F+  +  S++IS F A++    +   ++  ++ +         FF   +
Sbjct: 451 MEGTSGRLFREFSFVVAGSVIISSFAALTFTPMLATKLLIKREKQGWFYQKTEPFFEGMN 510

Query: 537 CIAIQ----FMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            I  +    F++ R W +    I+     +           ++ +  I +   A      
Sbjct: 511 RIYARSLNAFLKRRIWAIPVTVIMLIAIGVLWGQIPAEMAPMEDRSQISINTRAAEGASY 570

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLV 619
             +R   E +     S           V
Sbjct: 571 EYIRDYTEDINNLVDSIIPDAESVTARV 598



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 73/206 (35%), Gaps = 9/206 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A  + +E +KK + + V  S   +          E+        ++  I + +++    
Sbjct: 297 DAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASIDEVKSTVYEAFVLVIIIIFLFL---R 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +        + G   N+  + AV+  +G  V+D +V+ + +    
Sbjct: 354 DWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLAVVLSVGLVVDDAIVMTENI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 +   +   +   E     + T++      LP+    G+       F+  +A  +
Sbjct: 411 IRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVFMEGTSGRLFREFSFVVAGSV 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           ++++ +++     +   +   R K  
Sbjct: 471 IISSFAALTFTPMLATKLLIKREKQG 496



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 64/526 (12%), Positives = 149/526 (28%), Gaps = 42/526 (7%)

Query: 1    MRNNPWLV-ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
            ++   W + +   M+  IG+L        Q   +  P      +IS+      G+     
Sbjct: 521  LKRRIWAIPVTVIMLIAIGVL------WGQIPAEMAPMEDRS-QISINTRAAEGASYEYI 573

Query: 60   VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             D  + +N  +     +  S           +      I ++  D + ++    +V   +
Sbjct: 574  RDYTEDINNLVDSIIPDAES-------VTARVSSGSGNIRITLKDIKDRDYTQMEVAERI 626

Query: 120  QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                              T  +      S     +           +    I+++     
Sbjct: 627  SQAIR-----------NKTKARAFVQQQSSFGGRRGSMPVQYVLQAVS---IEKLEKVLP 672

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        Q+           L  ++ +M  +         G            G 
Sbjct: 673  DFLSKVYDNPTFQMADVD-------LKFSSPEMRVNINRDKAGTMGATVRDIAETLQYGL 725

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                     ++G            + + P    S      +       + +    +V   
Sbjct: 726  SGQRMGYFYMNGKQYEILGQINRQQRNTPANIKSIYIRSDKGEMIQLDNLVEFVESVAPP 785

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                    I+    +  A ++   TI         + A +L          +      S 
Sbjct: 786  KLYHYNRFISA---TVSAGLADGKTIGQGLEEMDKIAAQTLDETFRTALSGDSKDYRESS 842

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            S       +   L+ ++L       K   +   ++ L +   L  +   G T+ + S  G
Sbjct: 843  SSLMFAFILALILIYLILAAQFESFKDPFIIMLTVPLAIAGALIFMYAGGITMNIFSQIG 902

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            I++ IGL   + IL+ E   ++    ++   ++     +    I  ++ + ++  + L F
Sbjct: 903  IIMLIGLVAKNGILIVEFANQKQEGGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAF 962

Query: 480  FGGGAVRG---FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G            +   +L+S F  + IV A+  +I   + +K+
Sbjct: 963  ATGEGANQRIAMGTAVVGGMLVSTFLTMYIVPAIYSYISTNRNVKT 1008



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ L I   L F    GI  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPFIIMLTVPLAIAGALIFMYAGGITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +      +    I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEGGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAFATGEGANQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
            +V+   +++I   I  +I   R
Sbjct: 983  LVSTFLTMYIVPAIYSYISTNR 1004


>gi|320172881|gb|EFW48112.1| RND efflux system, inner membrane transporter CmeB [Shigella
           dysenteriae CDC 74-1112]
          Length = 1037

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASVIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 82/230 (35%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +    I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIGAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|283477659|emb|CAY73575.1| putative HAE1 family transporter [Erwinia pyrifoliae DSM 12163]
          Length = 1023

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 75/682 (10%), Positives = 185/682 (27%), Gaps = 51/682 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  ++C  G L  +        ++++P   P              ++ +  +        
Sbjct: 1   MAILLCLTGGLAIV-----SLPIEQYPDLAPP-------------NVRITANYPGASAET 42

Query: 70  LQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           L+      +   +        +   S    Q  +TL+F      +    +V   LQ    
Sbjct: 43  LENTVTQVIEQNMTGLDNLMYMSSQSSHTGQATVTLTFEAGTNPDEARQQVQNQLQTALR 102

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           KL  D +   +      + +I++             + +  +     D +       Q  
Sbjct: 103 KLPQDVQAQGVNVNKTGDTNILMVAFVSTDGSMDKQDIADYVASHLQDPLSRINGVGQVD 162

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                   +     P++L     TT ++       N+       G     D       + 
Sbjct: 163 AYGSQ-YAMRIWLGPNKLINYALTTTEVVDAIKSQNSQVAVGQLGGLPSVDRQALNATIN 221

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            +  +                 +                      I              
Sbjct: 222 SQSLL-------------QTPEQFRAITLRVNADGSVVTLGQVARIELGAEKYDYLSRYN 268

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
               +       +  +   T          L           +          S      
Sbjct: 269 GMAASGLGIKLASGANELQTDTLVRARLDELSRFFPHGLKAEIAFETSPFVKASIEDVVK 328

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           T      LV +V+++ +   +  L+   ++ + +  T  +L   G ++   ++  +VL I
Sbjct: 329 TLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTMFAMVLAI 388

Query: 425 GLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           GL VD  I+V E +      +  S   +      +    +    +      V + FFGG 
Sbjct: 389 GLLVDDAIVVVENVERIMTEEGLSPRDATRKSMGQIQGALVGIALVLSAVFVPMAFFGGT 448

Query: 484 ---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSR 530
                R F++T+  ++++S+  A+ +  A+   +           +       +      
Sbjct: 449 TGAIYRQFSVTIVSAMVLSVLVAMILTPALCCTLLKPLAMGHHHGQRGFFGWFNRTFNHN 508

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  +    ++   W V    L ++ ++  +        ++ +G     V       
Sbjct: 509 AERYKRGVGRMLVKGGRWLVVYLALIAVMALLFMRLPTSFLPLEDRGLFTTQVQLPPGST 568

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L    + +E ++   ++ +  + +  F        G+     R+   +K     +   +T
Sbjct: 569 LQQTMTVVEKVEHYYLTHEQDNVQSVFATVGAGPGGNGQNVARLFVRLKDWQNRLGSDNT 628

Query: 651 IQNTEIVGPKISRELIRKGIVG 672
                    K    +    +V 
Sbjct: 629 SFAIIDRATKAFSRINEAKVVA 650



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + L        + +    ++     +++   P 
Sbjct: 246 VTLGQVARIELGAEKYDYLSRYNGMAASGLGIKLASGANELQTDTLVRARLDELSRFFPH 305

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 306 GLKAEIAFETSPFVKASIEDVVKTLLEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 365

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N   + A++  IG  V+D +VV + +     +    +S RD   KS+ +
Sbjct: 366 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPRDATRKSMGQ 423

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +GG+       F++ +   +V++   ++ +   +   + 
Sbjct: 424 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAMILTPALCCTLL 483

Query: 825 D 825
            
Sbjct: 484 K 484



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 76/212 (35%), Gaps = 8/212 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G+S A       +      +  L      +  G  +   +       +  +S + + + +
Sbjct: 813  GESAAGVSNGAAMDMMEKLVSQLPNGIGLQWTGASLQERMTGAQAPALYALSLLVVFLCL 872

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L    L G+E ++     +LT++G S  + +++ + 
Sbjct: 873  AALYESWSIPFSVMLVVPLGVLGALIATWLRGLENDVYFQVGLLTVVGLSAKNAILIVEF 932

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
              +   + +          ++  + L   + TS+A    VLPMA+    G S   +    
Sbjct: 933  ANE---INSRGSELMAATLEASRQRLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTG 989

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +  G++ A   +IF      + +        +
Sbjct: 990  VLGGMISATVLAIFFVPLFFVLVRRRFPLKDK 1021


>gi|110801882|ref|YP_699217.1| preprotein translocase subunit SecF [Clostridium perfringens SM101]
 gi|110682383|gb|ABG85753.1| protein-export membrane protein SecF [Clostridium perfringens
           SM101]
          Length = 289

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 146/289 (50%), Gaps = 8/289 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            +     ISIL  +     +FT G+N+GIDF+GG Q+ +      + + V   +E     
Sbjct: 7   KKKIWFTISILIIVIGFGFMFTKGMNFGIDFRGGTQVVINMGTDFNKTDVDKIVEEYSKD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ Q    E     +       +     + E    K   +       +   +G  + R+
Sbjct: 67  AVTNQVNGTELQIKAKELNSSQVNDIFKALKEKYDLKDDAL------VSQNEIGASVGRD 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L    IV + I+ I MLIY+ IRF++ F + AI  L+ D+  T+  +A+FGI  N   +A
Sbjct: 121 LTTNAIVALAIAVIGMLIYVIIRFEFSFGIAAIIALLHDVLITISVYAIFGITINTPFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +V++DR+R+N +      S  ++ D SI +T+ RS+ T++   I+++
Sbjct: 181 AILTIVGYSINDTIVIFDRIREN-RKKLRGKSVEEIADMSITQTMSRSINTTLTTLITIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            + ++    +  FA P+  GI   A SSIFIA+PI   + + +     I
Sbjct: 240 CVYIF-VPTVRDFAFPLIVGIASGACSSIFIASPIWCILANRQKNKKAI 287


>gi|309797539|ref|ZP_07691929.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           145-7]
 gi|308118891|gb|EFO56153.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           145-7]
          Length = 1037

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   K M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVKMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|332992153|gb|AEF02208.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Alteromonas
           sp. SN2]
          Length = 1080

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 75/636 (11%), Positives = 176/636 (27%), Gaps = 39/636 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+   +        + ++PS  P                     +
Sbjct: 9   RPVFAWVISIIIMLAGIASIM-----SLPVAQYPSIAPPVI---------SVSTTYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + L        S        + ++F      +    +V   ++ 
Sbjct: 55  AETVENSVTQILEQQLTGLDGLLYFSSSSTSDGGASVNITFEQGTDSDYAQVQVQNKVEQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           VNS+     +   +  T      ++++          A + S  I     D I   E   
Sbjct: 115 VNSRFPESVQSQGVTVTKSNTDFLLVTAVYDSTDTVSAFDISDYISSNMQDSIARIEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L       + ++      N        G     DS     
Sbjct: 175 DTRVFGS-EYAMRIWLDPTKLAAYELMPSDITSALGAQNIQVPAGNIGAIPSADSQELNA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +                    +    I   +             +           
Sbjct: 234 TVTAQS-------------MMSTPEQFRNIIVKYDATGANVLLSDVARVEIGSESYSAIP 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +          +   T        A L               +      S + 
Sbjct: 281 RLNGHPASGIAVMLSPGANALDTATRVKEKVAQLATNLPDGYEVTFPRDSTDFIKISINE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV++V+++ +   +  L+   ++ + ++ T  +LS  G ++   ++ GIV
Sbjct: 341 VVHTLAEAVVLVVLVMWLFLQNWRATLIPAIAVPVVLLGTFGVLSAFGFSINTLTMFGIV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     ++  S   +     S     +    +      + + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERLMEEDNLSPREATIKSMSEITGALIGIAVVLSAVFLPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI------DINPLSRF 531
           GG      + F++ +  S+++S+  A+++   +   ++++K                 + 
Sbjct: 461 GGSIGVIYKQFSVAIVSSMILSVIVALTLSPTLCASLLKHKTPSEKHGDKLGKSESKGKR 520

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                    +F        G         +  +  + +  G+     +++        D 
Sbjct: 521 QSFFGWFNTKFDNMSNAYAGRVGCMVNQKVRWMIVYAVIIGVLGVLIVRMPTGFLPQEDQ 580

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             V   +       I      GE+     +  +   
Sbjct: 581 GSVMFQVNLPPGASIKRTRAVGEQVTDYLMTEETNT 616



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 97/249 (38%), Gaps = 6/249 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V LS V       +      +      + +  +     +++     ++    ++   +P
Sbjct: 260 NVLLSDVARVEIGSESYSAIPRLNGHPASGIAVMLSPGANALDTATRVKEKVAQLATNLP 319

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          +  I + +  +  + + +++ +W+  + W   L     + + +  
Sbjct: 320 DGYEVTFPRDSTDFIKISINEVVHTLAEAVVLVVLVMWLFLQNWRATLIPAIAVPVVLLG 379

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G  + FG   N   +  ++  IG  V+D +VV + +     +   ++S R+   KS++
Sbjct: 380 TFGVLSAFGFSINTLTMFGIVLSIGLLVDDAIVVVENV--ERLMEEDNLSPREATIKSMS 437

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E  G  +  ++      LPMA +GG   VI   F++ +   ++++   ++ ++  +   +
Sbjct: 438 EITGALIGIAVVLSAVFLPMAFFGGSIGVIYKQFSVAIVSSMILSVIVALTLSPTLCASL 497

Query: 824 YDWRAKNAR 832
              +  + +
Sbjct: 498 LKHKTPSEK 506



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      I  + L +        + G++ ++    A+LT IG 
Sbjct: 893  AISILVVFLALAALYESWSVPFSVIMVIPLGVVGAALASTMRGLDNDIYFQVALLTTIGL 952

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            +  + +++ +   +    Y   +S  D    +    L   + TS+A    +LP+A+  G+
Sbjct: 953  AAKNAILIVE-FAE--ASYQKGMSLIDAAVNAAKLRLRPIIMTSLAFMFGILPLAISSGA 1009


>gi|237708856|ref|ZP_04539337.1| multidrug efflux membrane fusion protein [Bacteroides sp.
           9_1_42FAA]
 gi|229457282|gb|EEO63003.1| multidrug efflux membrane fusion protein [Bacteroides sp.
           9_1_42FAA]
          Length = 1011

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 81/628 (12%), Positives = 178/628 (28%), Gaps = 48/628 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L  +I   GL+           +  +PS                  +     
Sbjct: 9   RRPVLATVLTIIILLFGLI-----GYNTLGVREYPSVDNPI-----------ISVTCSYS 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    ++  + +          +Q Q +IT+ F  S   E  A+ V   +
Sbjct: 53  GANADVIENQITEPLEQNINGIPGIRSLSSVSQQGQCRITVEFELSVDLETAANDVRDKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  D     +         I++     D      +E S        +Q+     
Sbjct: 113 SRAQRYLPRDCDPPTVSKADADATPILMVAIQSDS--RSLLELSEIADLTVKEQLQTISD 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP+++     T   +                           
Sbjct: 171 VSSVSIWGEKRYSMRLWLDPTKMAGYGITPVDVKNAITNE-------------------- 210

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                     T K   +I   E+G R              A +  
Sbjct: 211 NIELPSGSIEGNTVELTLRTMGQMHTAKEFNNIILKEVGGRVVRFSDIGYAELGPADIKS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +    +   +   +   +     +        ++              N      S 
Sbjct: 271 YMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K T      LV+I++F+ +   +  L+    I +++I    ++ + G ++ + ++  
Sbjct: 331 DEVKSTVYEAFVLVIIIIFLFLRDWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I++ E I     +    F +   G    +  +  + IT +   + + F
Sbjct: 391 VVLSVGLVVDDAIVMTENIYIRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVF 450

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R F+  +  S++IS F A++    +   ++  ++ +         FF   +
Sbjct: 451 MEGTSGRLFREFSFVVAGSVIISSFAALTFTPMLATKLLIKREKQGWFYQKTEPFFEGMN 510

Query: 537 CIAIQ----FMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            I  +    F++ R W +    I+     +  +        ++ +  I +   A      
Sbjct: 511 RIYARSLNAFLKRRIWAIPVTVIMLIAIGVLWVQIPAEMAPMEDRSQISINTRAAEGASY 570

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLV 619
             +R   E +     S           V
Sbjct: 571 EYIRDYTEDINNLVDSIIPDAESVTARV 598



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 73/206 (35%), Gaps = 9/206 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A  + +E +KK + + V  S   +          E+        ++  I + +++    
Sbjct: 297 DAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASIDEVKSTVYEAFVLVIIIIFLFL---R 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +        + G   N+  + AV+  +G  V+D +V+ + +    
Sbjct: 354 DWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLAVVLSVGLVVDDAIVMTENI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 +   +   +   E     + T++      LP+    G+       F+  +A  +
Sbjct: 411 IRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVFMEGTSGRLFREFSFVVAGSV 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           ++++ +++     +   +   R K  
Sbjct: 471 IISSFAALTFTPMLATKLLIKREKQG 496



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 64/526 (12%), Positives = 149/526 (28%), Gaps = 42/526 (7%)

Query: 1    MRNNPWLV-ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
            ++   W + +   M+  IG+L        Q   +  P      +IS+      G+     
Sbjct: 521  LKRRIWAIPVTVIMLIAIGVLWV------QIPAEMAPMEDRS-QISINTRAAEGASYEYI 573

Query: 60   VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             D  + +N  +     +  S           +      I ++  D + ++    +V   +
Sbjct: 574  RDYTEDINNLVDSIIPDAES-------VTARVSSGSGNIRITLKDIKDRDYTQMEVAERI 626

Query: 120  QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                              T  +      S     +           +    I+++     
Sbjct: 627  SQAIR-----------NKTKARAFVQQQSSFGGRRGSMPVQYVLQAVS---IEKLEKVLP 672

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        Q+           L  ++ +M  +         G            G 
Sbjct: 673  DFLSKVYDNPTFQMADVD-------LKFSSPEMRVNINRDKAGTMGATVRDIAETLQYGL 725

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                     ++G            + + P    S      +       + +    +V   
Sbjct: 726  SGQRMGYFYMNGKQYEILGQINRQQRNTPANIKSIYIRSDKGEMIQLDNLVEFVESVAPP 785

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                    I+    +  A ++   TI         + A +L          +      S 
Sbjct: 786  KLYHYNRFISA---TVSAGLADGKTIGQGLEEMDKIAAQTLDETFRTALSGDSKDYRESS 842

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            S       +   L+ ++L       K   +   ++ L +   L  +   G T+ + S  G
Sbjct: 843  SSLMFAFILALILIYLILAAQFESFKDPFIIMLTVPLAIAGALIFMYAGGITMNIFSQIG 902

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            I++ IGL   + IL+ E   ++    ++   ++     +    I  ++ + ++  + L F
Sbjct: 903  IIMLIGLVAKNGILIVEFANQKQEGGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAF 962

Query: 480  FGGGAVRG---FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G            +   +L+S F  + IV A+  +I   + +K+
Sbjct: 963  ATGEGANQRIAMGTAVVGGMLVSTFLTMYIVPAIYSYISTNRNVKT 1008



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 54/142 (38%), Gaps = 6/142 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ L I   L F    GI  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPFIIMLTVPLAIAGALIFMYAGGITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +      +    I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEGGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAFATGEGANQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
            +V+   +++I   I  +I   R
Sbjct: 983  LVSTFLTMYIVPAIYSYISTNR 1004


>gi|331685168|ref|ZP_08385754.1| multidrug resistance protein MdtF [Escherichia coli H299]
 gi|331077539|gb|EGI48751.1| multidrug resistance protein MdtF [Escherichia coli H299]
          Length = 1037

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LMATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|113478391|ref|YP_724452.1| preprotein translocase subunit SecF [Trichodesmium erythraeum
           IMS101]
 gi|110169439|gb|ABG53979.1| protein translocase subunit secF [Trichodesmium erythraeum IMS101]
          Length = 328

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 140/298 (46%), Gaps = 8/298 (2%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                 +I         +  +       +           +  +    +    N+P+ ++
Sbjct: 12  WWTISGSIILCGLIAMAISWTRPDISAPLRPSLDFVGGTRLQLELDCTIPNNCNQPIKVA 71

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            VR  +      +   Q    EK   + ++ +  D   +T+++  +  +  +  P     
Sbjct: 72  AVREIISKEGFPNSKIQVVGEEKE-AIDIRTKTLDVDTRTQLITALSTEFGKFDPD--ST 128

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             + VGP + R++   G+  ++++   + IY+  RF++ +A+ A   L  DI  T+G F+
Sbjct: 129 QIDTVGPTLGRQIFTSGLSALLVAFFGITIYLTFRFQFDYAVFAFVALFHDILVTVGIFS 188

Query: 713 LFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           + G+    E +   + A+LT+IG+SVND VV+YDR+R+ +K Y        ++D ++N+T
Sbjct: 189 ILGLVAGVEVDSLFLVALLTIIGFSVNDTVVIYDRVREVIKRYP-GKPINQIVDDAVNQT 247

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           L RS+ T++   + ++ + ++GG  +   A+ +  G V  + SSIFIA+ +L +  + 
Sbjct: 248 LTRSINTTVTTLLPLVGILIFGGETLKYLALALIIGFVAGSYSSIFIASTLLAWWRER 305


>gi|254393972|ref|ZP_05009066.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           clavuligerus ATCC 27064]
 gi|197707553|gb|EDY53365.1| bifunctional preprotein translocase subunit SecD/SecF [Streptomyces
           clavuligerus ATCC 27064]
          Length = 379

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 92/350 (26%), Positives = 172/350 (49%), Gaps = 12/350 (3%)

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP----LSRF 531
           +LF F  G V+GF +T+ + +L S+ +A+ I R    + +R   ++            R 
Sbjct: 9   LLFVFATGPVKGFGVTLAIGVLASLVSAMVITRLFADWAVRRGPVRRRPAWTGLTVRGRV 68

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             + +    + MR R   +G  +   +C++  +   GL +G++F GG Q+   A +PVD 
Sbjct: 69  RTLLERRPPRLMRYRRRWLGGCLGLLLCALAGIGVRGLEFGVEFTGGRQIQYTAGQPVDA 128

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
              R  +          Q                       R  E ++  +  +    T+
Sbjct: 129 DRARQAVADAGFPRAVVQKTGERG-------ITVRTGELDNRGQETIRAALGTVAGEVTV 181

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  E +GP +  EL R  ++ + ++  A L+Y+  RF+W FA+ A+  +  D+   +G F
Sbjct: 182 ERDETIGPSLGSELRRHALIALGVAVAAQLLYLTARFRWTFAVAAVAAMAQDVLLVVGLF 241

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A  G   +   +AA+LT++GYSVND VVV DR+R+  +      ++ +L D+++ +TL R
Sbjct: 242 AWLGKPVDSVFLAALLTVVGYSVNDTVVVLDRLRELRRSAPRG-TWPELADRAVAQTLPR 300

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +V T M A   ++ +AV GG  +  F++ +  G+V+  +S++F A P+++
Sbjct: 301 TVNTGMGALFVLVSLAVLGGDSLADFSVALLAGVVLGTASTVFTAMPLVV 350


>gi|15804058|ref|NP_290094.1| putative transport system permease protein [Escherichia coli
           O157:H7 EDL933]
 gi|12518223|gb|AAG58655.1|AE005576_14 putative transport system permease protein [Escherichia coli
           O157:H7 str. EDL933]
          Length = 1037

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 64/521 (12%), Positives = 146/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T       V +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIIXVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIIXVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|74313940|ref|YP_312359.1| putative transport system permease [Shigella sonnei Ss046]
 gi|157156681|ref|YP_001464983.1| multidrug resistance protein MdtF [Escherichia coli E24377A]
 gi|191165292|ref|ZP_03027135.1| multidrug resistance protein MdtF [Escherichia coli B7A]
 gi|193068582|ref|ZP_03049544.1| multidrug resistance protein MdtF [Escherichia coli E110019]
 gi|209920974|ref|YP_002295058.1| multidrug transport protein [Escherichia coli SE11]
 gi|218697223|ref|YP_002404890.1| multidrug transporter, RpoS-dependent [Escherichia coli 55989]
 gi|256020861|ref|ZP_05434726.1| multidrug transporter, RpoS-dependent [Shigella sp. D9]
 gi|260870240|ref|YP_003236642.1| multidrug transporter MdtF, RpoS-dependent [Escherichia coli
           O111:H- str. 11128]
 gi|293453818|ref|ZP_06664237.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           B088]
 gi|300815273|ref|ZP_07095498.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           107-1]
 gi|300822093|ref|ZP_07102236.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           119-7]
 gi|300926772|ref|ZP_07142543.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           182-1]
 gi|301329859|ref|ZP_07222587.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           78-1]
 gi|307311819|ref|ZP_07591457.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli W]
 gi|331670343|ref|ZP_08371182.1| multidrug resistance protein MdtF [Escherichia coli TA271]
 gi|331679585|ref|ZP_08380255.1| multidrug resistance protein MdtF [Escherichia coli H591]
 gi|332282075|ref|ZP_08394488.1| multidrug resistance protein MdtF [Shigella sp. D9]
 gi|73857417|gb|AAZ90124.1| putative transport system permease protein [Shigella sonnei Ss046]
 gi|157078711|gb|ABV18419.1| multidrug resistance protein MdtF [Escherichia coli E24377A]
 gi|190904694|gb|EDV64400.1| multidrug resistance protein MdtF [Escherichia coli B7A]
 gi|192958233|gb|EDV88674.1| multidrug resistance protein MdtF [Escherichia coli E110019]
 gi|209914233|dbj|BAG79307.1| multidrug transport protein [Escherichia coli SE11]
 gi|218353955|emb|CAV00409.1| multidrug transporter, RpoS-dependent [Escherichia coli 55989]
 gi|257766596|dbj|BAI38091.1| multidrug transporter MdtF, RpoS-dependent [Escherichia coli
           O111:H- str. 11128]
 gi|291321944|gb|EFE61375.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Escherichia coli
           B088]
 gi|300417205|gb|EFK00516.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           182-1]
 gi|300525456|gb|EFK46525.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           119-7]
 gi|300532165|gb|EFK53227.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           107-1]
 gi|300844092|gb|EFK71852.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           78-1]
 gi|306907963|gb|EFN38463.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli W]
 gi|315062793|gb|ADT77120.1| multidrug transporter, RpoS-dependent [Escherichia coli W]
 gi|320199693|gb|EFW74283.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli EC4100B]
 gi|323154114|gb|EFZ40318.1| inner membrane protein [Escherichia coli EPECa14]
 gi|323164656|gb|EFZ50451.1| inner membrane protein [Shigella sonnei 53G]
 gi|323178950|gb|EFZ64524.1| inner membrane protein [Escherichia coli 1180]
 gi|323182984|gb|EFZ68385.1| inner membrane protein [Escherichia coli 1357]
 gi|323376620|gb|ADX48888.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Escherichia coli KO11]
 gi|324018601|gb|EGB87820.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           117-3]
 gi|324116475|gb|EGC10393.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E1167]
 gi|331062405|gb|EGI34325.1| multidrug resistance protein MdtF [Escherichia coli TA271]
 gi|331072757|gb|EGI44082.1| multidrug resistance protein MdtF [Escherichia coli H591]
 gi|332104427|gb|EGJ07773.1| multidrug resistance protein MdtF [Shigella sp. D9]
          Length = 1037

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|296123129|ref|YP_003630907.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces limnophilus DSM 3776]
 gi|296015469|gb|ADG68708.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces limnophilus DSM 3776]
          Length = 1065

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 87/710 (12%), Positives = 204/710 (28%), Gaps = 57/710 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +   +G +        +  ++++PS  P               + +    
Sbjct: 9   RPIFANVIAIVTMILGGVALF-----RLPVEQYPSITPPT-------------VQVTATY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +   EG+   S     +    +T++F      +     V  
Sbjct: 51  PGANAQVLSDTVAAPIEQQVNGVEGMLYMSSTCASDGTYTLTVTFEVGANLDMAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  D ++  +    +    I +     D+    ++  S        D++   
Sbjct: 111 RVSQAEPRLPEDVRRQGINVKKQSTAIIQVVTLTSDEGKFDSLYLSNYATLSIRDELARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L+    + + +       N        G        
Sbjct: 171 YGVGEIQVFGSSDYGMRVWLDPNKLKARNLSASDVVAAIQEQNVQVAAGQLGAAPAPVGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +     +S +                ++  +    G R         +     + 
Sbjct: 231 DFEYTITTLGRLSDVEA-----------FNDIIVKTAPGNGGRLTRVRDVARVELGGQLY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                 +               +          + A L           +          
Sbjct: 280 NLYCEKSGIPAAGLAIFQLPGANSLNVAHDVKKVMAKLEKDFPKGLNYDIPFDTTKFVEE 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +    T      LVLIV+ + +   +  LV   ++ + +I   AL+  +G ++ + ++
Sbjct: 340 AIAEVYKTLFEAGVLVLIVILVFLQDWRAVLVPATTVPVTIIGAFALMWAMGFSVNMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSN---ITALIA 473
            G+VL IG+ VD  I++ E        +  +   +  +        I       +   + 
Sbjct: 400 FGLVLAIGIVVDDAIVIVENAAHHIEHDHLAPREATIVAMGEILGPIIGITLVLMAVFLP 459

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA-MMIFIIRYKKMKSIDINPLSRFF 532
           T  +    G   R FA+T+  + LIS   A+++  A   +++      K+I     +  +
Sbjct: 460 TAGMQGITGQLYRQFALTIAATALISAVNALTLKPAQCAVYLRPVAPKKNIFYRGFNAVY 519

Query: 533 LIPDCIAIQFMR--ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              + I +  ++   R     +    +I +  +L    L  G          V+  +  D
Sbjct: 520 DFFEGIYVSIVKVLVRAPLFSMIAYLAIVTSTVLLFRSLPTGFLPTEDQGYLVVGCQLPD 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +        LQ  +    +  G +N++        D  A +    +           S 
Sbjct: 580 GASQERTKAVLQKMNKILGSTPGIENWVTIGGQSLLDQAASSNAATIYVTLKEWSHRQSP 639

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            ++                + GV+ S  A    I     + F   AI  L
Sbjct: 640 QES----------------LFGVLGSLYAQFATIDDAITFAFPPPAILGL 673



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 74/189 (39%), Gaps = 16/189 (8%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            +V+  ++K   + +      +T     +   E+ +      ++  I +L+++     W 
Sbjct: 311 KKVMAKLEKDFPKGLNYDIPFDTTKFVEEAIAEVYKTLFEAGVLVLIVILVFLQ---DWR 367

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L   TT+ + I          G   N+  +  ++  IG  V+D +V+     +N   +
Sbjct: 368 AVLVPATTVPVTIIGAFALMWAMGFSVNMLTLFGLVLAIGIVVDDAIVIV----ENAAHH 423

Query: 752 --TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI-----GSFAIPMAFG 804
                ++ R+    ++ E LG  +   +   +  + +   G   I       FA+ +A  
Sbjct: 424 IEHDHLAPREATIVAMGEILGPII--GITLVLMAVFLPTAGMQGITGQLYRQFALTIAAT 481

Query: 805 IVVAASSSI 813
            +++A +++
Sbjct: 482 ALISAVNAL 490



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 51/148 (34%), Gaps = 6/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      I  + L +  +       G++ N+     ++ +I  +  + +++ +  R   
Sbjct: 893  SWTSPAAVILVVPLGLVGSGLALLARGMDNNVYTQIGLVLIIALASKNAILIVEFARD-- 950

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L     S  D    +        + TS A  + V P+ V    G +   +    +  G+
Sbjct: 951  -LRHKGASILDAAVNASRLRFRPILMTSFAFILGVYPLVVAQGAGAASRQALGTAVFGGM 1009

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            + +   ++F      + +       AR+
Sbjct: 1010 ITSTILAVFFTPVFYVVMQSLSEGYARL 1037


>gi|218438155|ref|YP_002376484.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 7424]
 gi|218170883|gb|ACK69616.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 7424]
          Length = 1043

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 77/572 (13%), Positives = 166/572 (29%), Gaps = 40/572 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +G +           +DRFP   P             + + +   
Sbjct: 8   KRPVFSTVCAIIILLVGTISIF-----TLPVDRFPDISP-------------TQVQVTAT 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
            +      ++    + L   +   EG+   +     +    IT++F  SR K+  A  V 
Sbjct: 50  YNGANAQVVENAVTNILERQINGVEGMKYITSSSSNDGTSSITVTFDSSRDKDIAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V  +L  D ++  +  + +    ++      +      +  S    R  +D +  
Sbjct: 110 NQVALVEPQLPEDVQRLGVQVSKQSNNILLGIGLYDENQQYDNVFLSNYADRYIVDALKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    DP RL     T   +       N        G +   + 
Sbjct: 170 IEGVGNVRIFGERRYAMRLWLDPVRLASRGLTMQDVIQALSEQNIQVGAGKIGAQPAPEG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +  + ++S                +    +   +                    
Sbjct: 230 QQYQLDIRAESQLS-------------DPGEFENLLLKADENVGLVRLRDVGRAELGAQD 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +              L           V         
Sbjct: 277 YNSFIRYRGQEAVGVGIYQLTGSNALQVAHKVKQAMEELATTFPAGVRYQVAFDTTLFIE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  +  GLV++V+ + +   +  L+   +I + ++ T A + + G +L   +
Sbjct: 337 ESLREVVITLLMAVGLVVLVILIFLQDWRTTLIPSITIPVALVGTFAYVKVFGFSLNSLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+ L  G+ VD  I+V E+I      +  S   +        +  +  +++  L   V
Sbjct: 397 LFGLTLATGMVVDDAIIVVEQISRYIQERGMSPQEAASQAMKELFGAVIATSLVLLAVFV 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FF G      + FA+T+  SI IS F A+++  ++   ++R        +  +   F
Sbjct: 457 PVAFFPGTTGALYQQFALTIAFSITISTFLAVTLTPSLCALMLRPDSSIPGWLMVIFGKF 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                   Q  R     +       +     L
Sbjct: 517 NDFLDWTRQGYRRSLIFLARIRPIVMIVFAGL 548



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 84/234 (35%), Gaps = 5/234 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L +                  +             +V + +++  T        Q  
Sbjct: 269 RAELGAQDYNSFIRYRGQEAVGVGIYQLTGSNALQVAHKVKQAMEELATTFPAGVRYQVA 328

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   L    I  ++   + +L+ +     W   L    T+ + +  T  +  +F
Sbjct: 329 FDTTLFIEESLREVVITLLMAVGLVVLVILIFLQDWRTTLIPSITIPVALVGTFAYVKVF 388

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N   +  +    G  V+D ++V +++ + ++     +S ++   +++ E  G  + 
Sbjct: 389 GFSLNSLTLFGLTLATGMVVDDAIIVVEQISRYIQE--RGMSPQEAASQAMKELFGAVIA 446

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           TS+      +P+A + G+       FA+ +AF I ++   ++ +   +   +  
Sbjct: 447 TSLVLLAVFVPVAFFPGTTGALYQQFALTIAFSITISTFLAVTLTPSLCALMLR 500



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 57/142 (40%), Gaps = 12/142 (8%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMK 749
             L  +  + L I   L    L G   ++     ++ LIG +  + +++ +   ++R+   
Sbjct: 897  PLIIMLAVPLAILGALLAQMLRGFPNDVYCQIGLVMLIGLASKNSILIVEFANQLREE-- 954

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                 +       ++  E L   + T+++  + + P+ +    G +   S    +  G++
Sbjct: 955  ----GLPIVKAAIEASQERLRPILMTAISTLLGIFPLVIAVGAGSASRQSLGTAVFGGML 1010

Query: 807  VAASSSIFIAAPILLFIYDWRA 828
            +A   S+FI   + + I  +  
Sbjct: 1011 IATFLSLFIVPILYIVIKSFTE 1032


>gi|218556064|ref|YP_002388977.1| multidrug transporter, RpoS-dependent [Escherichia coli IAI1]
 gi|218362832|emb|CAR00461.1| multidrug transporter, RpoS-dependent [Escherichia coli IAI1]
          Length = 1037

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|82545878|ref|YP_409825.1| transport system permease protein [Shigella boydii Sb227]
 gi|187733839|ref|YP_001882200.1| multidrug resistance protein MdtF [Shigella boydii CDC 3083-94]
 gi|81247289|gb|ABB67997.1| putative transport system permease protein [Shigella boydii Sb227]
 gi|187430831|gb|ACD10105.1| multidrug resistance protein MdtF [Shigella boydii CDC 3083-94]
 gi|320183478|gb|EFW58327.1| RND efflux system, inner membrane transporter CmeB [Shigella
           flexneri CDC 796-83]
 gi|332095838|gb|EGJ00846.1| inner membrane protein [Shigella boydii 3594-74]
          Length = 1037

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 82/230 (35%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +    I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIGAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|332854097|ref|ZP_08435167.1| RND transporter, HAE1 family [Acinetobacter baumannii 6013150]
 gi|332866902|ref|ZP_08437256.1| RND transporter, HAE1 family [Acinetobacter baumannii 6013113]
 gi|332728204|gb|EGJ59589.1| RND transporter, HAE1 family [Acinetobacter baumannii 6013150]
 gi|332734361|gb|EGJ65486.1| RND transporter, HAE1 family [Acinetobacter baumannii 6013113]
          Length = 1036

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 81/685 (11%), Positives = 179/685 (26%), Gaps = 44/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 8   RRPVFAWVIAIFIIIFGLLSI-----PKLPIARFPSVAPP-------------QVNISAT 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +IT +F      E     V 
Sbjct: 50  YPGATAKTINDSVVTLIERELSGVKNLLYYSATTDTSSTAEITATFKPGTDVEMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQVVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 170 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S +              +        +            N+      
Sbjct: 229 QLITIPLSAQGQLSSLE-------------QFKNISLKSKTNGSVIKLSDVANVEIGSQA 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 276 YNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPEGMEFSIPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 336 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +         S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLSPKDATSKAMKEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      + F +TM +SIL S   A+ +  A+   I++            + F 
Sbjct: 456 PMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL---ANRPV 589
              D +  ++       +  ++   +  + +               +             
Sbjct: 516 RSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFAGMKYWPTAFMPEEDQGWFMTSFQ 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S   +      +        D             G S A   V              S
Sbjct: 576 LPSDATAERTRNVVNQFENNLKDNPDVKSNTAILGWGFSGAGQNVAVAFTTLKDFKERTS 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
           +                    + V+
Sbjct: 636 SASKMTSDVNSSMANSTEGETMAVL 660



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 87/239 (36%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V     +    +++   +P 
Sbjct: 261 IKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 321 GMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  +S +D   K
Sbjct: 378 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLSPKDATSK 434

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPMA   GSV      F + M+  I+ +A  ++ +   +
Sbjct: 435 AMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPAL 493



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 786  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 845

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 846  GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 897

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 898  PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 954

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 955  TVAAAKLRLRPILMTSLAFTCGVIPLVIATGAS-SETQHALGTGVFGGMISATILA 1009


>gi|293416958|ref|ZP_06659595.1| multidrug resistance protein mdtF [Escherichia coli B185]
 gi|291431534|gb|EFF04519.1| multidrug resistance protein mdtF [Escherichia coli B185]
          Length = 1037

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|15891728|ref|NP_357400.1| RND multidrug efflux transporter [Agrobacterium tumefaciens str.
           C58]
 gi|15160190|gb|AAK90185.1| RND multidrug efflux transporter [Agrobacterium tumefaciens str.
           C58]
          Length = 1044

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 73/613 (11%), Positives = 171/613 (27%), Gaps = 42/613 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL       P   + ++P+  P  +IS+G +  G          
Sbjct: 8   RPIFAWVVAIFIMLAGLLAI-----PMLPIAQYPNVAPP-QISIGTNYPG-------ASP 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
           +D     +    +E  + +        +        I ++F           +V   +  
Sbjct: 55  EDIYQS-VTRPIEEELNGVPGLIYFESTSESSGRISINVTFEPGTNIGEAQVEVQNRIAR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L     +  L         +++         + AI     + R  + ++       
Sbjct: 114 VEPRLPRSVTQQGLRVEQAGTSFLMMVALTSVDGNTDAIGLGDYLSRNVLGELRRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           DP ++  L  T+  +       N+       G            
Sbjct: 174 SAQLFATQRSM-RIWMDPDKMLGLSLTSDDVINAIQAQNSQVAAGRIGASPNPVGQQISA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + +++                +    +                 +           
Sbjct: 233 TVNVQGQLT-------------SPEEFGSIVLRANPDGSSVRLRDVARVEVGGESYNFSS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T E        L           +          S   
Sbjct: 280 RLNGKPSAAIGVQLSPTANAMQTSEGVRATMEELSRYFPQGIEYEIPYDTSPFVKISIEK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   ++ ++    + + ++ T A++ + G ++ + ++  +V
Sbjct: 340 VIHTLIEAMILVFVVMFVFLQNIRYTIIPTLVVPVALLGTCAVMYVSGFSINVLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +   S   +      +    I    +      V + FF
Sbjct: 400 LAIGILVDDAIVVVENVERIMAEEHLSPKEATRKAMGQISGAIIGITLVLTAVFVPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
               G   + F++TM +SIL S F A+S+  A+              +       + N  
Sbjct: 460 PGAVGIIYQQFSLTMVVSILFSGFLALSLTPALCASFLKPIKAGHHEKKGFFGWFNRNFD 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +     R+  + +  + L +      +         + +G + + + A   
Sbjct: 520 KASHKYSSSVGGIIKRSGRFMIIYAALLAGLGWAYMQLPSSFLPNEDQGYLIVDIQAPAE 579

Query: 589 VDLSVVRSNLESL 601
                   +++ +
Sbjct: 580 ASTERTLQSIQQI 592



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 88/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  + S +        +        +++  +  +    ++++   P 
Sbjct: 260 VRLRDVARVEVGGESYNFSSRLNGKPSAAIGVQLSPTANAMQTSEGVRATMEELSRYFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I K I  +I + I + + +++  +   + +     + + +  T
Sbjct: 320 GIEYEIPYDTSPFVKISIEKVIHTLIEAMILVFVVMFVFLQNIRYTIIPTLVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N+  + A++  IG  V+D +VV + +     +    +S ++   K++ +
Sbjct: 380 CAVMYVSGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERIMAEEHLSPKEATRKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +  ++      +PMA + G+V      F++ M   I+ +   ++ +   +
Sbjct: 438 ISGAIIGITLVLTAVFVPMAFFPGAVGIIYQQFSLTMVVSILFSGFLALSLTPAL 492



 Score = 45.8 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  + L +  ++    L G+  ++  +  ++ +IG S  + +++ +  +   
Sbjct: 888  SWSIPLSVMLVVPLGVIGSVAAVMLRGMPNDVYFLVGLVAIIGLSAKNAILIIEFAKDLR 947

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGI 805
                   S  D   ++ +      + TS+A  + VLPM   +    +   +    +  G+
Sbjct: 948  AE---GKSTYDATVEAAHLRFRPILMTSLAFSLGVLPMAIASGASAASQNAIGTGVLGGM 1004

Query: 806  VVAASSSI 813
            + A   +I
Sbjct: 1005 ISATILAI 1012


>gi|307720505|ref|YP_003891645.1| protein-export membrane protein SecD [Sulfurimonas autotrophica DSM
           16294]
 gi|306978598|gb|ADN08633.1| protein-export membrane protein SecD [Sulfurimonas autotrophica DSM
           16294]
          Length = 521

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 181/544 (33%), Positives = 292/544 (53%), Gaps = 37/544 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ N + ++++++    G++ +LP+ L               +I+LGLDL+GG H++L V
Sbjct: 1   MKLN-YRIVIFALAIVFGIVFSLPSLLQTQ---------SGKKITLGLDLQGGLHMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             ++     ++  +  ++ F ++  I +  +      +T    DS               
Sbjct: 51  KTEEATKSRIKSMAASIKHFAERNDILINGLTFDNKSVTFEVLDSDEI--------KTFD 102

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              SKL     + + VT     IS+ L+   I++    A+ Q++E IR R+DQ G+SE  
Sbjct: 103 EFLSKL-----EGVTVTHKGSVISVSLTPKEIEKTKKQAVSQAIETIRNRLDQFGLSEPI 157

Query: 181 IQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVL--------PNNSKKGFMFG 229
           + R G  +IL++L G +   D  R R+L+   AK+    V           +      +G
Sbjct: 158 VARQGKDKILVELAGIKSQEDEQRARELISRAAKLELMAVDEDRNARVYNMSDADAASYG 217

Query: 230 VRFLRD--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              L D  S   +YLV +   + G  L GA   FD    +PV++   +  GA  F + T 
Sbjct: 218 DIILEDVKSPKIKYLVHEIPILDGGMLTGANVGFDQNN-RPVINFKLNAEGADIFGDFTG 276

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            N+GK LAVVLDG+V +AP IN+ I  G  QISGN+T+  A  LA  LR+G+L   + ++
Sbjct: 277 KNVGKRLAVVLDGKVYSAPNINERIGGGSGQISGNYTVLEAKDLAIALRSGALLAPIYLM 336

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E+R+VG  LG+DSI     A++ G VL+++FM+V Y   G++A+ ++  N++L LA++SL
Sbjct: 337 EKRSVGPSLGADSIKASMIALIGGFVLVIVFMMVYYRMAGVIANIALIANLLLLLAVMSL 396

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            GATLTLP +AGIVL +G+AVD+N+++ ERIRE   + +S+  +++ G+S A   I D+N
Sbjct: 397 FGATLTLPGMAGIVLTVGMAVDANVIITERIRELIYEGKSMHKAIEEGYSNAMRAILDAN 456

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           IT LIA+VVL+ +G GA++GFA+TM + IL SM TAI     +   +             
Sbjct: 457 ITTLIASVVLYVYGTGAIKGFAVTMSIGILASMLTAILGTHGIYQMLESKMGKSKNYRFW 516

Query: 528 LSRF 531
               
Sbjct: 517 FGIK 520



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 84/182 (46%), Gaps = 4/182 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            +     VGP +  + I+  ++ +I   + +++++ + ++    + A   LI ++   L 
Sbjct: 334 YLMEKRSVGPSLGADSIKASMIALIGGFVLVIVFMMVYYRM-AGVIANIALIANLLLLLA 392

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             +LFG    L  +A ++  +G +V+  V++ +R+R+ +       S    I++  +  +
Sbjct: 393 VMSLFGATLTLPGMAGIVLTVGMAVDANVIITERIRELIYE---GKSMHKAIEEGYSNAM 449

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  ++   I+ + + V+G   I  FA+ M+ GI+ +  ++I     I   +     K
Sbjct: 450 RAILDANITTLIASVVLYVYGTGAIKGFAVTMSIGILASMLTAILGTHGIYQMLESKMGK 509

Query: 830 NA 831
           + 
Sbjct: 510 SK 511


>gi|226946429|ref|YP_002801502.1| multidrug efflux pump HAE1 family transporter protein [Azotobacter
           vinelandii DJ]
 gi|226721356|gb|ACO80527.1| multidrug efflux pump HAE1-family transporter protein [Azotobacter
           vinelandii DJ]
          Length = 1069

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 61/573 (10%), Positives = 148/573 (25%), Gaps = 39/573 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +           + ++P   P               + +    
Sbjct: 10  RPIFASVISIVITLAGAVAMF-----NLPVAQYPDITPP-------------QITVSATY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   +        +   S       + + F            V  
Sbjct: 52  PGADAEVVANNVAAPIEQQVNGADDMIYMNSSSSATGNMTLNVFFEIGTDPSLAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    +   +    +    +++           +   +       +D I   
Sbjct: 112 RVNLALPQLPSAVQSQGIQVQKKSSAFMMVIAVYSPDERYDSTYIANYANLYILDAIKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ QL  T A +       N        G     ++ 
Sbjct: 172 PGANQASIFGTPDYAMRIWLKPDRMAQLKITAADVQQAVANQNQQFAVGRIGQSPTGEAV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  K  ++                   + I     GA                  
Sbjct: 232 EQSFAVTTKGRLT------------EPEEFENIIIRAASGGAAIVRLRDVGRAELGQKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +      A +           +          
Sbjct: 280 SLRSTYQGKPATLMAVYQQPGANALDVSDAVRTTLAEMEKSFPAGIEYKIVMDTTAFTRT 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV+ V+++ +   +  L+   ++ ++++ T   ++ LG ++ + ++
Sbjct: 340 SIAEVVHTFFEALVLVVAVVYLFLQSLRATLIPVLAVPVSIVGTFIGMTALGFSINMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    +        +           +    +      V 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMQVHRLPPREAAKRAMDEVAGPVVAIVLVLCAVFVP 459

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FAIT+ +S++IS   A+++  A+   +I+    +            
Sbjct: 460 VAFMGGITGQLYKQFAITIAISVVISGLVALTLSPALAAILIKPAHGRKRGFFRWFERNF 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
                      A      +  L     + +L  
Sbjct: 520 ERMTEGYSRAVAFMIKRFLLALLLFAGMVVLTV 552



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 61/142 (42%), Gaps = 5/142 (3%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L  +  + + I  T       G   N+  +  ++  IG  V+D +VV + +
Sbjct: 361 LFLQSLRATLIPVLAVPVSIVGTFIGMTALGFSINMLTLFGMVLAIGIVVDDAIVVIENV 420

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
            +NM+++   +  R+   ++++E  G  V   +      +P+A  G   G +   FAI +
Sbjct: 421 ERNMQVH--RLPPREAAKRAMDEVAGPVVAIVLVLCAVFVPVAFMGGITGQLYKQFAITI 478

Query: 802 AFGIVVAASSSIFIAAPILLFI 823
           A  +V++   ++ ++  +   +
Sbjct: 479 AISVVISGLVALTLSPALAAIL 500



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +   I + + +  +++ W   +G +  +   +   L    L G+  ++     +  L+  
Sbjct: 882  VFGLIMVFLILAAQYEKWTLPVGVLLAVPFALFGALLAILLRGLVNDVYFQIGLTMLVAL 941

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            +  + +++++     +      +S  D    +  E L   V TS+A  +  +P+A+  G+
Sbjct: 942  AAKNAILIFEFA---VLNREKGMSVFDAAMTAARERLRPIVMTSLAFILGCVPLAIAVGA 998

Query: 793  ---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                  S    +  G++ A   ++F        I     K
Sbjct: 999  SENSRHSIGTGVIGGMLAATVIAVFFIPLFYYLIERLSEK 1038


>gi|254882859|ref|ZP_05255569.1| multidrug efflux membrane fusion protein [Bacteroides sp.
           4_3_47FAA]
 gi|319643380|ref|ZP_07998006.1| multidrug efflux membrane fusion protein [Bacteroides sp. 3_1_40A]
 gi|254835652|gb|EET15961.1| multidrug efflux membrane fusion protein [Bacteroides sp.
           4_3_47FAA]
 gi|317385009|gb|EFV65962.1| multidrug efflux membrane fusion protein [Bacteroides sp. 3_1_40A]
          Length = 1011

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 81/628 (12%), Positives = 178/628 (28%), Gaps = 48/628 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L  +I   GL+           +  +PS                  +     
Sbjct: 9   RRPVLATVLTIIILLFGLI-----GYNTLGVREYPSVDNPI-----------ISVTCSYS 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    ++  + +          +Q Q +IT+ F  S   E  A+ V   +
Sbjct: 53  GANADVIENQITEPLEQNINGIPGIRSLSSVSQQGQCRITVEFELSVDLETAANDVRDKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  D     +         I++     D      +E S        +Q+     
Sbjct: 113 SRAQRYLPRDCDPPTVSKADADATPILMVAIQSDS--RSLLELSEIADLTVKEQLQTISD 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP+++     T   +                           
Sbjct: 171 VSSVSIWGEKRYSMRLWLDPTKMAGYGITPVDVKNAITNE-------------------- 210

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                     T K   +I   E+G R              A +  
Sbjct: 211 NIELPSGSIEGNTVELTLRTMGQMHTAKEFNNIILKEVGGRVVRFSDIGYAELGPADIKS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +    +   +   +   +     +        ++              N      S 
Sbjct: 271 YMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K T      LV+I++F+ +   +  L+    I +++I    ++ + G ++ + ++  
Sbjct: 331 DEVKSTVYEAFVLVIIIIFLFLRDWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I++ E I     +    F +   G    +  +  + IT +   + + F
Sbjct: 391 VVLSVGLVVDDAIVMTENIYIRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVF 450

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R F+  +  S++IS F A++    +   ++  ++ +         FF   +
Sbjct: 451 MEGTSGRLFREFSFVVAGSVIISSFAALTFTPMLATKLLIKREKQGWFYQKTEPFFEGMN 510

Query: 537 CIAIQ----FMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            I  +    F++ R W +    I+     +  +        ++ +  I +   A      
Sbjct: 511 RIYARSLNAFLKRRIWAIPVTVIMLIAIGVLWVQIPAEMAPMEDRSQISINTRAAEGASY 570

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLV 619
             +R   E +     S           V
Sbjct: 571 EYIRDYTEDINNLVDSIIPDAESVTARV 598



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 73/206 (35%), Gaps = 9/206 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A  + +E +KK + + V  S   +          E+        ++  I + +++    
Sbjct: 297 DAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASIDEVKSTVYEAFVLVIIIIFLFL---R 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +        + G   N+  + AV+  +G  V+D +V+ + +    
Sbjct: 354 DWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLAVVLSVGLVVDDAIVMTENI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 +   +   +   E     + T++      LP+    G+       F+  +A  +
Sbjct: 411 IRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVFMEGTSGRLFREFSFVVAGSV 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           ++++ +++     +   +   R K  
Sbjct: 471 IISSFAALTFTPMLATKLLIKREKQG 496



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 64/526 (12%), Positives = 149/526 (28%), Gaps = 42/526 (7%)

Query: 1    MRNNPWLV-ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
            ++   W + +   M+  IG+L        Q   +  P      +IS+      G+     
Sbjct: 521  LKRRIWAIPVTVIMLIAIGVLWV------QIPAEMAPMEDRS-QISINTRAAEGASYEYI 573

Query: 60   VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             D  + +N  +     +  S           +      I ++  D + ++    +V   +
Sbjct: 574  RDYTEDINNLVDSIIPDAES-------VTARVSSGSGNIRITLKDIKDRDYTQMEVAERI 626

Query: 120  QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                              T  +      S     +           +    I+++     
Sbjct: 627  SQAIR-----------NKTKARAFVQQQSSFGGRRGSMPVQYVLQAVS---IEKLEKVLP 672

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        Q+           L  ++ +M  +         G            G 
Sbjct: 673  AFLSKVYDNPTFQMADVD-------LKFSSPEMRVNINRDKAGTMGATVRDIAETLQYGL 725

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                     ++G            + + P    S      +       + +    +V   
Sbjct: 726  SGQRMGYFYMNGKQYEILGQINRQQRNTPANIKSIYIRSDKGEMIQLDNLVEFVESVAPP 785

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                    I+    +  A ++   TI         + A +L          +      S 
Sbjct: 786  KLYHYNRFISA---TVSAGLADGKTIGQGLEEMDKIAAQTLDETFRTALSGDSKDYRESS 842

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            S       +   L+ ++L       K   +   ++ L +   L  +   G T+ + S  G
Sbjct: 843  SSLMFAFILALILIYLILAAQFESFKDPFIIMLTVPLAIAGALIFMYAGGITMNIFSQIG 902

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            I++ IGL   + IL+ E   ++    ++   ++     +    I  ++ + ++  + L F
Sbjct: 903  IIMLIGLVAKNGILIVEFANQKQESGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAF 962

Query: 480  FGGGAVRG---FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G            +   +L+S F  + IV A+  +I   + +K+
Sbjct: 963  ATGEGANQRIAMGTAVVGGMLVSTFLTMYIVPAIYSYISTNRNVKT 1008



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ L I   L F    GI  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPFIIMLTVPLAIAGALIFMYAGGITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +   +  +    I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQESGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAFATGEGANQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
            +V+   +++I   I  +I   R
Sbjct: 983  LVSTFLTMYIVPAIYSYISTNR 1004


>gi|150004416|ref|YP_001299160.1| multidrug efflux membrane fusion protein [Bacteroides vulgatus ATCC
           8482]
 gi|149932840|gb|ABR39538.1| multidrug efflux membrane fusion protein [Bacteroides vulgatus ATCC
           8482]
          Length = 1011

 Score =  190 bits (481), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 81/628 (12%), Positives = 178/628 (28%), Gaps = 48/628 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L  +I   GL+           +  +PS                  +     
Sbjct: 9   RRPVLATVLTIIILLFGLI-----GYNTLGVREYPSVDNPI-----------ISVTCSYS 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    ++  + +          +Q Q +IT+ F  S   E  A+ V   +
Sbjct: 53  GANADVIENQITEPLEQNINGIPGIRSLSSVSQQGQCRITVEFELSVDLETAANDVRDKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  D     +         I++     D      +E S        +Q+     
Sbjct: 113 SRAQRYLPRDCDPPTVSKADADATPILMVAIQSDS--RSLLELSEIADLTVKEQLQTISD 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP+++     T   +                           
Sbjct: 171 VSSVSIWGEKRYSMRLWLDPTKMAGYGITPVDVKNAITNE-------------------- 210

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                     T K   +I   E+G R              A +  
Sbjct: 211 NIELPSGSIEGNTVELTLRTMGQMHTAKEFNNIILKEVGGRVVRFSDIGYAELGPADIKS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +    +   +   +   +     +        ++              N      S 
Sbjct: 271 YMKMNGVPMVGVVVIPQPGANHIEIADAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K T      LV+I++F+ +   +  L+    I +++I    ++ + G ++ + ++  
Sbjct: 331 DEVKSTVYEAFVLVIIIIFLFLRDWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I++ E I     +    F +   G    +  +  + IT +   + + F
Sbjct: 391 VVLSVGLVVDDAIVMTENIYIRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVF 450

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R F+  +  S++IS F A++    +   ++  ++ +         FF   +
Sbjct: 451 MEGTSGRLFREFSFVVAGSVIISSFAALTFTPMLATKLLIKREKQGWFYQKTEPFFEGMN 510

Query: 537 CIAIQ----FMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            I  +    F++ R W +    I+     +  +        ++ +  I +   A      
Sbjct: 511 RIYARSLNAFLKRRIWAIPVTVIMLIAIGVLWVQIPAEMAPMEDRSQISINTRAAEGASY 570

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLV 619
             +R   E +     S           V
Sbjct: 571 EYIRDYTEDINNLVDSIIPDAESVTARV 598



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 73/206 (35%), Gaps = 9/206 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A  + +E +KK + + V  S   +          E+        ++  I + +++    
Sbjct: 297 DAVYQRMEQMKKDLPDDVKYSYGFDNTKFIRASIDEVKSTVYEAFVLVIIIIFLFL---R 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +        + G   N+  + AV+  +G  V+D +V+ + +    
Sbjct: 354 DWRVTLIPCIVIPVSLIGAFFVMYIAGFSINVLTMLAVVLSVGLVVDDAIVMTENI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 +   +   +   E     + T++      LP+    G+       F+  +A  +
Sbjct: 411 IRIERGMRPFEAGIEGAKEIFFAVISTTITLVAVFLPIVFMEGTSGRLFREFSFVVAGSV 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           ++++ +++     +   +   R K  
Sbjct: 471 IISSFAALTFTPMLATKLLIKREKQG 496



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 64/526 (12%), Positives = 149/526 (28%), Gaps = 42/526 (7%)

Query: 1    MRNNPWLV-ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
            ++   W + +   M+  IG+L        Q   +  P      +IS+      G+     
Sbjct: 521  LKRRIWAIPVTVIMLIAIGVLWV------QIPAEMAPMEDRS-QISINTRAAEGASYEYI 573

Query: 60   VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             D  + +N  +     +  S           +      I ++  D + ++    +V   +
Sbjct: 574  RDYTEDINNLVDSIIPDAES-------VTARVSSGSGNIRITLKDIKDRDYTQMEVAERI 626

Query: 120  QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                              T  +      S     +           +    I+++     
Sbjct: 627  SQAIR-----------NKTKARAFVQQQSSFGGRRGSMPVQYVLQAVS---IEKLEKVLP 672

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        Q+           L  ++ +M  +         G            G 
Sbjct: 673  AFLSKVYDNPTFQMADVD-------LKFSSPEMRVNINRDKAGTMGATVRDIAETLQYGL 725

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                     ++G            + + P    S      +       + +    +V   
Sbjct: 726  SGQRMGYFYMNGKQYEILGQINRQQRNTPANIKSIYIRSDKGEMIQLDNLVEFVESVAPP 785

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                    I+    +  A ++   TI         + A +L          +      S 
Sbjct: 786  KLYHYNRFISA---TVSAGLADGKTIGQGLEEMDKIAAQTLDETFRTALSGDSKDYRESS 842

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            S       +   L+ ++L       K   +   ++ L +   L  +   G T+ + S  G
Sbjct: 843  SSLMFAFILALILIYLILAAQFESFKDPFIIMLTVPLAIAGALIFMYTGGITMNIFSQIG 902

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            I++ IGL   + IL+ E   ++    ++   ++     +    I  ++ + ++  + L F
Sbjct: 903  IIMLIGLVAKNGILIVEFANQKQESGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAF 962

Query: 480  FGGGAVRG---FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G            +   +L+S F  + IV A+  +I   + +K+
Sbjct: 963  ATGEGANQRIAMGTAVVGGMLVSTFLTMYIVPAIYSYISTNRNVKT 1008



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ L I   L F    GI  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPFIIMLTVPLAIAGALIFMYTGGITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +   +  +    I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQESGENKMQAIRDAALQRLRPILMTSASTVLGLIPLAFATGEGANQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
            +V+   +++I   I  +I   R
Sbjct: 983  LVSTFLTMYIVPAIYSYISTNR 1004


>gi|317153243|ref|YP_004121291.1| protein-export membrane protein SecF [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943494|gb|ADU62545.1| protein-export membrane protein SecF [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 355

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 94/341 (27%), Positives = 161/341 (47%), Gaps = 48/341 (14%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPVD 590
            LI     I F+  R     +S +  +  +  L   G   YGIDF GG+ + V  ++ ++
Sbjct: 4   QLIKPDTRIDFIGFRKIAFILSAVVLLAGLGSLLIKGGPQYGIDFAGGMIVQVKVDKTIE 63

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLS 649
           +S +++ LE   +  +  Q+   E +    ++    +  ++     +     +       
Sbjct: 64  VSALKAALEETGLPGLVVQSLGMEDDHEYLIRTSSSEVSSKEVRTLVSSALTSHLSGVAF 123

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-------------------- 689
            IQ  E+VGPK+  +L  K +  +  + + + +YI  RF+                    
Sbjct: 124 DIQRLEMVGPKVGADLRSKALEALFFAVLVIAVYISGRFEQRWTVAAIMAAALGGGIYAI 183

Query: 690 --------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
                                       +ALGA+  LI D+  T+G F++   EF+LT +
Sbjct: 184 GLLGLNMGWLIIAAMVMTIGLCWYLKLNYALGAVVALIHDVAITIGIFSILDKEFDLTII 243

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA+LT+IGYS+ND ++V+DR+R+N      +  F+ +I++SIN+TL R++ TS+   + V
Sbjct: 244 AALLTIIGYSLNDTIIVFDRIRENTNAQKDTRRFKSIINQSINQTLSRTIMTSLTTLLVV 303

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             + V GGSVI  FA+ +  GI V   SSIF+A+PILL   
Sbjct: 304 ACLFVLGGSVIHDFALALLIGIGVGTYSSIFVASPILLGFG 344


>gi|255321131|ref|ZP_05362297.1| protein-export membrane protein SecF [Acinetobacter radioresistens
           SK82]
 gi|262380180|ref|ZP_06073335.1| protein-export membrane protein SecF [Acinetobacter radioresistens
           SH164]
 gi|255301685|gb|EET80936.1| protein-export membrane protein SecF [Acinetobacter radioresistens
           SK82]
 gi|262298374|gb|EEY86288.1| protein-export membrane protein SecF [Acinetobacter radioresistens
           SH164]
          Length = 321

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 151/310 (48%), Gaps = 4/310 (1%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M         ++    +   I FM+       ISI+ ++ S+  + T GLN G+DF GG
Sbjct: 1   MMTENTQPKQKQYGRPDNERVIDFMKIALPAAIISIILTVGSLFFIVTKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           I   +   +  +   V   L      D   Q      + L+R+  Q  +      +   +
Sbjct: 61  ISAELNYKQAANQGEVIRALNDAGFKDAVVQTLGSNSDLLIRMPAQDINVE---DLNSTL 117

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K        + +   + VG ++  EL  +    V ++ + MLIY+ IRF++  A+GA+ 
Sbjct: 118 TKAAQLPNNPAEVSKIDSVGGQVGNELYVRSAGAVALALVLMLIYVTIRFEFKLAIGAVL 177

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  DI  T+G FA+    F+LT +AA+L LIG+S+ND +VV DR+R+N +        R
Sbjct: 178 SLFHDIIVTIGIFAMMQWPFDLTVLAALLALIGFSLNDNIVVSDRIRENFRKI-RGAEPR 236

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           ++++ ++ ETL R+V+TSM   + V+ M + GG  +  F++ M  G+ V   SSI+I   
Sbjct: 237 EIVNIALTETLRRTVHTSMTLLLVVIAMMLMGGEGLHWFSVAMFVGVFVGTYSSIYIGTS 296

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 297 FALWRGLNRQ 306


>gi|15601449|ref|NP_233080.1| preprotein translocase subunit SecD [Vibrio cholerae O1 biovar
           eltor str. N16961]
 gi|121585614|ref|ZP_01675410.1| protein-export membrane protein SecD [Vibrio cholerae 2740-80]
 gi|153820646|ref|ZP_01973313.1| protein-export membrane protein SecD [Vibrio cholerae B33]
 gi|227812260|ref|YP_002812270.1| protein-export membrane protein SecD [Vibrio cholerae M66-2]
 gi|229506145|ref|ZP_04395654.1| protein-export membrane protein SecD [Vibrio cholerae BX 330286]
 gi|229509997|ref|ZP_04399477.1| protein-export membrane protein SecD [Vibrio cholerae B33]
 gi|229514148|ref|ZP_04403609.1| protein-export membrane protein SecD [Vibrio cholerae TMA 21]
 gi|229516442|ref|ZP_04405889.1| protein-export membrane protein SecD [Vibrio cholerae RC9]
 gi|229605684|ref|YP_002876388.1| preprotein translocase subunit SecD [Vibrio cholerae MJ-1236]
 gi|254849853|ref|ZP_05239203.1| protein-export membrane protein SecD [Vibrio cholerae MO10]
 gi|298499494|ref|ZP_07009300.1| protein-export membrane protein SecD [Vibrio cholerae MAK 757]
 gi|9658110|gb|AAF96592.1| protein-export membrane protein SecD [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121550231|gb|EAX60245.1| protein-export membrane protein SecD [Vibrio cholerae 2740-80]
 gi|126521689|gb|EAZ78912.1| protein-export membrane protein SecD [Vibrio cholerae B33]
 gi|227011402|gb|ACP07613.1| protein-export membrane protein SecD [Vibrio cholerae M66-2]
 gi|229346323|gb|EEO11294.1| protein-export membrane protein SecD [Vibrio cholerae RC9]
 gi|229348128|gb|EEO13086.1| protein-export membrane protein SecD [Vibrio cholerae TMA 21]
 gi|229352442|gb|EEO17382.1| protein-export membrane protein SecD [Vibrio cholerae B33]
 gi|229356496|gb|EEO21414.1| protein-export membrane protein SecD [Vibrio cholerae BX 330286]
 gi|229372170|gb|ACQ62592.1| protein-export membrane protein SecD [Vibrio cholerae MJ-1236]
 gi|254845558|gb|EET23972.1| protein-export membrane protein SecD [Vibrio cholerae MO10]
 gi|297541475|gb|EFH77526.1| protein-export membrane protein SecD [Vibrio cholerae MAK 757]
          Length = 612

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 150/513 (29%), Positives = 259/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRA 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +    ++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVVVQAMGND---AFEVKTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|284923539|emb|CBG36634.1| multidrug resistance protein [Escherichia coli 042]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + +LP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGLLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|26250147|ref|NP_756187.1| hypothetical protein c4325 [Escherichia coli CFT073]
 gi|227883673|ref|ZP_04001478.1| multidrug resistance protein MdtF [Escherichia coli 83972]
 gi|300985049|ref|ZP_07177255.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           45-1]
 gi|57012957|sp|Q8FCI8|MDTF_ECOL6 RecName: Full=Multidrug resistance protein MdtF
 gi|26110576|gb|AAN82761.1|AE016768_179 Hypothetical protein yhiV [Escherichia coli CFT073]
 gi|227839552|gb|EEJ50018.1| multidrug resistance protein MdtF [Escherichia coli 83972]
 gi|300408209|gb|EFJ91747.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           45-1]
 gi|307555617|gb|ADN48392.1| multidrug resistance protein MdtF [Escherichia coli ABU 83972]
 gi|315291810|gb|EFU51162.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           153-1]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPVEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|330504696|ref|YP_004381565.1| preprotein translocase subunit SecF [Pseudomonas mendocina NK-01]
 gi|328918982|gb|AEB59813.1| preprotein translocase subunit SecF [Pseudomonas mendocina NK-01]
          Length = 305

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/290 (31%), Positives = 166/290 (57%), Gaps = 5/290 (1%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I+FM  R     I+++ ++  +  LF  GLN+G+DF GG  + +   +P +L ++
Sbjct: 1   MIKSTIRFMAIRNIAFSITVVLTLIGLGALFAKGLNFGLDFTGGTLIELQYEQPANLDLI 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++ L      D   Q+F    + LVRL     D   Q         +  +      ++  
Sbjct: 61  KTELGQAGYADAVVQSFGASTDVLVRLAGDDPDLGKQVAAA----LRKVDEATRFEVKRV 116

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E VGP++  EL  +G + ++++   +L+Y+  RF+W F +GAI +L+ D+  TLG  A F
Sbjct: 117 EFVGPQVGEELRDQGGIAMLLALGGILLYLAFRFQWKFGVGAIASLVHDVVITLGVLAFF 176

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            + F+LT +AAVL +IGYS+ND +++YDR+R+N ++   + S  + +D SI +TL R++ 
Sbjct: 177 QVPFDLTVLAAVLAMIGYSLNDTIIIYDRIRENFRVLRKT-SLIENVDISITQTLLRTIA 235

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           TS++  +++L +  +GG V+ +FA+ +  G+VV   SS++I A +L+++ 
Sbjct: 236 TSLSTALALLALLFFGGDVLAAFALTLLVGVVVGTYSSVYIGATVLVWLK 285


>gi|323950188|gb|EGB46071.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H252]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPVEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|153829217|ref|ZP_01981884.1| protein-export membrane protein SecD [Vibrio cholerae 623-39]
 gi|148875330|gb|EDL73465.1| protein-export membrane protein SecD [Vibrio cholerae 623-39]
          Length = 612

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 150/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRA 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   +++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVAVQAMGND---AFEVKTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|146300689|ref|YP_001195280.1| acriflavin resistance protein [Flavobacterium johnsoniae UW101]
 gi|146155107|gb|ABQ05961.1| acriflavin resistance protein [Flavobacterium johnsoniae UW101]
          Length = 1032

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 87/684 (12%), Positives = 190/684 (27%), Gaps = 47/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L  +I   G +           +  FPS  P          +          
Sbjct: 9   RRPVLTIVLNLLIILFGFI-----GYTFLGVREFPSIDPA---------QVSIRTNYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +        S  Q  + IT+ F   +  E  A+ V   +  
Sbjct: 55  NADIIESQITEPLEKAVNAIDGIRNITSSSNQGSSNITIEFNLDKDLEEAANDVRDKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +  +     S  +    +      ++E S         ++       
Sbjct: 115 AIRSLPQDIDAPPV-VSKADADSDAIISMTVQSDTRSSLELSDYAENVISQRLETIPGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP++L     T A +       N               +     
Sbjct: 174 AVQIWGQKRYAMRLWIDPAKLSAYGCTVADVRTALNSQNVELPSGKLTGNNTELTVKTVG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                      +I     G +                +    
Sbjct: 234 NLSKPEEF--------------------NNIIIRTDGDKIVRLSDIGGAELGPENLETKL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +   +           +     +        L+          +   N      S   
Sbjct: 274 SQSGLPLIGLAIVPMPGANYLDISKEFYKKYETLKKDLPKDIKLNIALDNTIFVKKSVLE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+I++++              I +++I T  ++ L G ++ + ++  IV
Sbjct: 334 VAETLGISIVLVIIIIYLFFRDWAIAFRPLIDIPVSLIATFFIMWLFGFSINVLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478
           L  GL VD  I+V E I ++  +  S   +   G +    A  +I  +     +  + L 
Sbjct: 394 LATGLVVDDGIVVTENIFKKVEEGMSPIEAAIKGSNEIFYAVISISVTLAAVFLPVIFLE 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
            F G   R F + +G ++LIS F ++++   +  ++++  + K       +  F      
Sbjct: 454 GFVGRLFREFGVVIGAAVLISAFVSLTLTPMLNAYLMKGGEQKKSKFYIKTEPFFEKMNS 513

Query: 539 AI----QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
           +          R W     ++     I L FT        +     + +    P   S  
Sbjct: 514 SYAEALTKFMDRKWISFPILIACFGLIYLFFTILPKETAPYDDRSSVTMRMTTPEGSSYE 573

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--- 651
            ++    +I  +   +   +K  LV        +   + ++ +  K + E          
Sbjct: 574 YTDRFMQEISRLIDDSIPEKKVSLVITSPGFSSNSVNSGLVRLTLKDVDEREKSQKEIAD 633

Query: 652 --QNTEIVGPKISRELIRKGIVGV 673
                    P     + ++  + V
Sbjct: 634 KLTKWTKQYPNAKTSVTQQPTIAV 657



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 8/154 (5%)

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           Y++ R  W  A   +  + + +  T     LFG   N+  + A++   G  V+D +VV +
Sbjct: 350 YLFFR-DWAIAFRPLIDIPVSLIATFFIMWLFGFSINVLTLLAIVLATGLVVDDGIVVTE 408

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
            +    K     +S  +   K  NE     +  S+      LP+     + G +   F +
Sbjct: 409 NI---FKKVEEGMSPIEAAIKGSNEIFYAVISISVTLAAVFLPVIFLEGFVGRLFREFGV 465

Query: 800 PMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
            +   ++++A  S+ +   +    +     K ++
Sbjct: 466 VIGAAVLISAFVSLTLTPMLNAYLMKGGEQKKSK 499



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      I T+ + +   L    LF   +N+ +    + LIG    + +++ +      
Sbjct: 876  SFIDPFIIILTVPMAVAGALFSLWLFNQTWNIFSQIGTVMLIGLVTKNGILIVEFAN--- 932

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVIG--SFAIPMAFGI 805
            +L        + I ++    L   + TS+A  +  LP+A+  G +        + +  G 
Sbjct: 933  QLREQGKPKMEAILEASEARLRPILMTSLAIALGALPIAMSLGAASTSRIGMGVVIVGGT 992

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
            + + + ++F+   I       R 
Sbjct: 993  IFSLALTLFVIPAIYFMWSKARK 1015


>gi|218691798|ref|YP_002400010.1| multidrug transporter, RpoS-dependent [Escherichia coli ED1a]
 gi|218429362|emb|CAR10324.2| multidrug transporter, RpoS-dependent [Escherichia coli ED1a]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPVEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAAGTGVMGGMFAATVLAIY 1018


>gi|298294311|ref|YP_003696250.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Starkeya
           novella DSM 506]
 gi|296930822|gb|ADH91631.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Starkeya
           novella DSM 506]
          Length = 1062

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/638 (11%), Positives = 173/638 (27%), Gaps = 34/638 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  ++  IG +  +        + ++P+ +P                +     
Sbjct: 9   RPVLANVLALVLVLIGSVALI-----TLPVAQYPNVVPPTVQ---------VTTLYPGSS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   + +  ++  + ++       +        +T++FA     +     V   +  
Sbjct: 55  ARTLVDTVALPIEQQVNGVEGMLYMQSTSASDGTYTLTVTFAIGTDPDFAQVLVQNRVAI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +   + T  +    +             ++  +   +    D+I   +   
Sbjct: 115 AMASLPEAVQLQGVTTQKKSTAVLQFVALYSPDERYDSLFLANYGVINLQDEIARLQGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP  L+    T   +       +      + G+  +      QY
Sbjct: 175 NVQILGAGQYAMRVWLDPDALQTRQLTPQDVISAIQQQSQEVASGVVGMPPVPKGQNFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     ++               ++ ++    +  G R         +           
Sbjct: 235 TLVMDGRLNDAA-----------DYENIIVKVSNADGGRITRLRDVGRVELGAQTYSQVF 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              L     P     V          S + 
Sbjct: 284 TFNGKPSASLGIYPLPGANSLQVAGEVKAKMEELAKAFPPGLAYAVPFDTTVFVNASINE 343

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LVLIV+ + +   +  LV   ++ + +I T A ++ +G T+ L ++  IV
Sbjct: 344 VYKTLFEAGILVLIVILVFLQDWRATLVPATTVPVTIIGTFAAMAAMGFTVNLSTLFAIV 403

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E +     K      + +      +  I    +  +   +   F  
Sbjct: 404 LAIGIVVDDAIVIVEGVARHIEKGLPGRLAAEKAMDELFGPIIGITLVLMSVFIPAAFMP 463

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+ +  +  IS   A+++        +R              F  + D  
Sbjct: 464 GLTGQLYQQFALVIAATAFISAINAMTLKPTQCALWLRPPVPPEKRNFFYRGFNAVYDRA 523

Query: 539 AIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
              + R         G    +   +  + +     +  G          ++  +  D + 
Sbjct: 524 EHWYARLISRMVHAAGFVTLVGLVLIGVAIWGLTRVPTGFLPTEDQGYVLIGAQLPDAAS 583

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           ++     +Q          G KN +        D+ A 
Sbjct: 584 LQRTEAVMQQVSEIAMKTPGVKNVVAVSGVSVLDNNAT 621



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 9/176 (5%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                +E + K     +  +   +T +       E+ +      I+  I +L+++     
Sbjct: 309 EVKAKMEELAKAFPPGLAYAVPFDTTVFVNASINEVYKTLFEAGILVLIVILVFLQ---D 365

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L   TT+ + I  T    A  G   NL+ + A++  IG  V+D +V+ + +    +
Sbjct: 366 WRATLVPATTVPVTIIGTFAAMAAMGFTVNLSTLFAIVLAIGIVVDDAIVIVEGV---AR 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
                +  R   +K+++E  G  +  ++      +P A      G +   FA+ +A
Sbjct: 423 HIEKGLPGRLAAEKAMDELFGPIIGITLVLMSVFIPAAFMPGLTGQLYQQFALVIA 478



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 9/165 (5%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +     +L+Y  +      W   L  +  + L +  T+G     G+  NL     ++ LI
Sbjct: 878  VFGLAILLVYFVLAGQYESWVLPLSVLLAVPLALLGTVGALTGLGVANNLYTQIGLILLI 937

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
              S  + +++ +  R+        +   D   ++        + TS A  + VLP+ +  
Sbjct: 938  ALSAKNAILIVEFAREKRAE---GMELMDAAVEAARLRFRPILMTSFAFILGVLPLVLAT 994

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G +   S  I +  G++ +   ++         +  +    AR
Sbjct: 995  GAGANSRKSIGIAVFSGMLASTCLAVLFVPSFYTVLQRFEEWRAR 1039


>gi|225872973|ref|YP_002754432.1| transporter, hydrophobe/amphiphile efflux-1 family [Acidobacterium
           capsulatum ATCC 51196]
 gi|225792082|gb|ACO32172.1| transporter, hydrophobe/amphiphile efflux-1 family [Acidobacterium
           capsulatum ATCC 51196]
          Length = 1060

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/525 (13%), Positives = 150/525 (28%), Gaps = 39/525 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  ++  +G +              FP+ +P               + ++  
Sbjct: 8   RRPIVAMVISILMVIMGTITLF-----TLPTAEFPNIVPPE-------------IQVQAT 49

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116
                   L        +E  + +        +       ++T+ F  +           
Sbjct: 50  YPGADANTLAQSVATPIEEQMNGVDNMDYMYSTSASNGVMQLTVDFGVNTDPNIDQVLAQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           L +    S+L  +     ++        ++L   N      + +  S        DQ+  
Sbjct: 110 LRVSQAQSQLPAEVNTAGVIVQKSLHAPLMLIALNSPHGTYNGVFLSNYAYINLADQLSR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P +L  L  T  ++       NN       G   + + 
Sbjct: 170 VYGISHVQVFGAGQYAMRVWVQPDKLATLGITVPQVIQAIQTQNNVNPAGQVGGEPVPNG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y V  +  +                 +    I                 I      
Sbjct: 230 QQFTYTVRTQGRL-------------VTPAEFGNIILRANADGSIVRLKDVARISLGAQN 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +   T          L           V      A  
Sbjct: 277 YSLMARYNGRPSAILALYQLPNTNAVKTSAAVRARLKELSKNFPSDVNYSVSLDTTKAVT 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                   T     GLV++V+F+ +   +  L+   ++ +++I T  +  +LG ++   S
Sbjct: 337 AGIHEILTTLLEALGLVVLVVFIFLQGWRASLIPLMAVPVSLIGTFIVFPMLGFSINTLS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +  +   +      + A   I  + I + +   
Sbjct: 397 LFGLVLAIGLVVDDAIVVVEAVEHHIEEGMTPRDAAIRAMEQVANPVIAIALILSAVFIP 456

Query: 476 VLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
             F  G  G   + FA+T+ +S++ S F A+++  A+   ++R K
Sbjct: 457 TAFIPGITGRLYQQFAVTIAISVIFSAFNALTLSPALCALLLRPK 501



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 80/214 (37%), Gaps = 10/214 (4%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                 S A    L+ + K     V  S   +T         E++   +  + +  + + 
Sbjct: 299 TNAVKTSAAVRARLKELSKNFPSDVNYSVSLDTTKAVTAGIHEILTTLLEALGLVVLVVF 358

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++     W  +L  +  + + +  T   F + G   N  ++  ++  IG  V+D +VV 
Sbjct: 359 IFLQ---GWRASLIPLMAVPVSLIGTFIVFPMLGFSINTLSLFGLVLAIGLVVDDAIVVV 415

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFA 798
           + +          ++ RD   +++ +     +  ++      +P A   G        FA
Sbjct: 416 EAV---EHHIEEGMTPRDAAIRAMEQVANPVIAIALILSAVFIPTAFIPGITGRLYQQFA 472

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + +A  ++ +A +++   +P L  +     K  R
Sbjct: 473 VTIAISVIFSAFNAL-TLSPALCALLLRPKKEGR 505



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 85/257 (33%), Gaps = 10/257 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                A+  +      + ++     D + +  +     +         S      ++ V K
Sbjct: 789  YVHNASGGLVPLSAITTVKRTTGPDFNLRFNEYPAAQINITGAPGYSSGQVMDAIQTVFK 848

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +          +       + ++ +    + G+ I  +  LI   +   W      + + 
Sbjct: 849  QTMPPGMGFDYEGMSYQEQQAAQGVPPAAVFGLSI-MVVFLILAALYESWTLPFSVLLST 907

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             + +        L G+E ++ A   ++ LIG S  + +++ +  R     Y    S  D 
Sbjct: 908  PVAVLGAFLALHLRGLENDVYAQIGLVMLIGLSAKNAILIVEFAR---AEYQRGESIYDA 964

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF--- 814
               +        + T+ A  +  +P+ V    GG         +  G++ A   +IF   
Sbjct: 965  ALGAARLRFRPIIMTAFAFILGCIPLWVATGAGGVAREILGTAVIGGMLAATCIAIFLVP 1024

Query: 815  IAAPILLFIYDWRAKNA 831
            +A  ++ ++    +K  
Sbjct: 1025 VAFAVVEWLSHRFSKKG 1041


>gi|323174157|gb|EFZ59785.1| inner membrane protein [Escherichia coli LT-68]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|163858506|ref|YP_001632804.1| AcrB/AcrD/AcrF family protein [Bordetella petrii DSM 12804]
 gi|163262234|emb|CAP44536.1| AcrB/AcrD/AcrF family protein [Bordetella petrii]
          Length = 1043

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/691 (10%), Positives = 184/691 (26%), Gaps = 46/691 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++P+  P            G         
Sbjct: 8   RPIFAWVVAIVIMLAGALSIL-----SLPVNQYPNIAPPAI---------GIIANYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L              +  I ++F      +    +V   L  
Sbjct: 54  AQTVQDTVTQVIEQQLNGLDGLRYIRSESNADGSVTIVVTFEQGVNPDIAQVQVQNKLSL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  L     +   ++++    +         + +I+ Q  D +  +    
Sbjct: 114 ATPMLPQAVQQLGLRVVKYQVNFMLVAALISEDGRLDNYALADQIVSQLQDPLTRTAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   +       N        G R          
Sbjct: 174 DFFVMGSQ-NAMRVWLDPLKLNNYALTPGDVIAAIEEQNVQVSSGQLGGRPTAGKVELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +                 +    +        +       ++           
Sbjct: 233 TVIGKTLL-------------QTPEQFGAMLLKVNTDGSQVRLRDVADVALGADNFSITT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    ++      + L     P    +           S + 
Sbjct: 280 RYNGKPSAGIALRLASGGNTLEAVKAVQETLSRLEPTLPPGVKVVYPYNTAPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  L+   ++ + ++ T  +++ +G T+   ++ G+V
Sbjct: 340 VVHTLLEAIVLVFVIMYLFLQNWRATLIPTLAVPVVLLGTFGVMAAVGFTINTLTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERLMVEEGLSPLEATRKSMEQISGALVGIGLVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLS 529
           GG      R F++T+  ++ +S+F A+    A+   +         +       +     
Sbjct: 460 GGSTGVIYRQFSLTIVTAMTLSVFVALIFTPALCATMLKPVHGHHEKKGFFGWFNRMFER 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +         + +  +++    ++            + +G + + V      
Sbjct: 520 NAQRYESGVTRVVAGRGRYMLAFALIVGALAVLFPMMPTSFLPDEDQGTMVVQVELPTNS 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                   L  L          + E + +  +    G S A       +     +     
Sbjct: 580 TADQTDQLLNELSTY-----LLEEEGDVVDSVFAVNGFSFAGRGQNSGLAFVQLKPWEER 634

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                ++    + R    K    +  +  A+
Sbjct: 635 KRSVFDLQASAMQRFSEVKAGTALAFAPPAI 665



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V           I+ +        +       G+++   + ++    ++   +
Sbjct: 258 SQVRLRDVADVALGADNFSITTRYNGKPSAGIALRLASGGNTLEAVKAVQETLSRLEPTL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  ++ + + + + +++  + W   L     + + + 
Sbjct: 318 PPGVKVVYPYNTAPVVSESINGVVHTLLEAIVLVFVIMYLFLQNWRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   +  ++  IG  V+D +VV + +     +    +S  +   KS+
Sbjct: 378 GTFGVMAAVGFTINTLTMFGLVLAIGLLVDDAIVVVENV--ERLMVEEGLSPLEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V   +      +PMA +GGS       F++ +   + ++   ++     +
Sbjct: 436 EQISGALVGIGLVLSAVFIPMAFFGGSTGVIYRQFSLTIVTAMTLSVFVALIFTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 76/253 (30%), Gaps = 8/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V       +S           G    + ++G     +  +  PG S              
Sbjct: 784  VRNKNGQMVSFASFATGKWVYGSPKLERYNGVPAIEILGEPAPGYSSGDAMRAVEEIAAK 843

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + ++   + +     +   W      +  + L
Sbjct: 844  LPSGVSLAWTGLSYEERLSGSQAPALYALSIVAVFLCLA---ALYESWSIPFSVLLVVPL 900

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +  T+    + G+E +      +LT +G    + +++ +  +   +      +      
Sbjct: 901  GVIGTVAATLMRGLENDAFFQIGLLTTVGLCAKNAILIVEFAKDLHEKG--GRTLVQAAI 958

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + V+P+A+  G+      +    +  G+V A   +IF     
Sbjct: 959  EASRLRLRPIIMTSLAFTMGVIPLAISSGASSGSKHAIGTGVIGGMVTATFLAIFFIPLF 1018

Query: 820  LLFIYDWRAKNAR 832
             + +     K AR
Sbjct: 1019 YVVVSSLFTKKAR 1031


>gi|15833648|ref|NP_312421.1| transport system permease protein [Escherichia coli O157:H7 str.
           Sakai]
 gi|168746949|ref|ZP_02771971.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753325|ref|ZP_02778332.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759596|ref|ZP_02784603.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4501]
 gi|168765920|ref|ZP_02790927.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772534|ref|ZP_02797541.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779656|ref|ZP_02804663.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4076]
 gi|168785378|ref|ZP_02810385.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC869]
 gi|168797343|ref|ZP_02822350.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC508]
 gi|195935042|ref|ZP_03080424.1| putative transport system permease protein [Escherichia coli
           O157:H7 str. EC4024]
 gi|208805644|ref|ZP_03247981.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4206]
 gi|208812525|ref|ZP_03253854.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819250|ref|ZP_03259570.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399072|ref|YP_002272991.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4115]
 gi|217324481|ref|ZP_03440565.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           TW14588]
 gi|254795466|ref|YP_003080303.1| multidrug transporter, RpoS-dependent [Escherichia coli O157:H7
           str. TW14359]
 gi|261224829|ref|ZP_05939110.1| multidrug transporter, RpoS-dependent [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261254274|ref|ZP_05946807.1| multidrug transporter, RpoS-dependent [Escherichia coli O157:H7
           str. FRIK966]
 gi|291284886|ref|YP_003501704.1| Multidrug resistance protein mdtF [Escherichia coli O55:H7 str.
           CB9615]
 gi|57012961|sp|Q8X3J5|MDTF_ECO57 RecName: Full=Multidrug resistance protein MdtF
 gi|13363868|dbj|BAB37817.1| putative transport system permease protein [Escherichia coli
           O157:H7 str. Sakai]
 gi|187771544|gb|EDU35388.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4196]
 gi|188018221|gb|EDU56343.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002614|gb|EDU71600.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358808|gb|EDU77227.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364816|gb|EDU83235.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369516|gb|EDU87932.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4501]
 gi|189374252|gb|EDU92668.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC869]
 gi|189380081|gb|EDU98497.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC508]
 gi|208725445|gb|EDZ75046.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733802|gb|EDZ82489.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739373|gb|EDZ87055.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160472|gb|ACI37905.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           EC4115]
 gi|209755568|gb|ACI76096.1| putative transport system permease protein [Escherichia coli]
 gi|209755570|gb|ACI76097.1| putative transport system permease protein [Escherichia coli]
 gi|209755572|gb|ACI76098.1| putative transport system permease protein [Escherichia coli]
 gi|209755574|gb|ACI76099.1| putative transport system permease protein [Escherichia coli]
 gi|209755576|gb|ACI76100.1| putative transport system permease protein [Escherichia coli]
 gi|217320702|gb|EEC29126.1| multidrug resistance protein MdtF [Escherichia coli O157:H7 str.
           TW14588]
 gi|254594866|gb|ACT74227.1| multidrug transporter, RpoS-dependent [Escherichia coli O157:H7
           str. TW14359]
 gi|290764759|gb|ADD58720.1| Multidrug resistance protein mdtF [Escherichia coli O55:H7 str.
           CB9615]
 gi|320191439|gb|EFW66089.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. EC1212]
 gi|320639830|gb|EFX09424.1| Multidrug resistance protein mdtF [Escherichia coli O157:H7 str.
           G5101]
 gi|320645330|gb|EFX14346.1| Multidrug resistance protein mdtF [Escherichia coli O157:H- str.
           493-89]
 gi|320650641|gb|EFX19107.1| Multidrug resistance protein mdtF [Escherichia coli O157:H- str. H
           2687]
 gi|320655835|gb|EFX23758.1| Multidrug resistance protein mdtF [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661617|gb|EFX29032.1| Multidrug resistance protein mdtF [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320666640|gb|EFX33623.1| Multidrug resistance protein mdtF [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326337488|gb|EGD61323.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. 1044]
 gi|326340014|gb|EGD63821.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli O157:H7 str. 1125]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|120556792|ref|YP_961143.1| acriflavin resistance protein [Marinobacter aquaeolei VT8]
 gi|120326641|gb|ABM20956.1| acriflavin resistance protein [Marinobacter aquaeolei VT8]
          Length = 1048

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 71/547 (12%), Positives = 166/547 (30%), Gaps = 39/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G+   L        +  +P   P                     
Sbjct: 9   KRPVFATVLSLLIVVFGVAALL-----GLPVREYPDIDPPVV---------SVSTDYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    +   S ++       S  Q +++ ++ F  SR  +  A+ V   +  
Sbjct: 55  AAEVVDTQITQVIEGAISGIEGIRSIESSTEQGESRTSIEFDTSRDVDIAANDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  +    ++         ++      D     + E S    R   D++ + +   
Sbjct: 115 VLNQLPDEADPPVVQKADSDARPMMWITLISDVW--DSAELSDFADRVLADRLSVLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D +RL     T A++       N               +   + 
Sbjct: 173 DVRIGGERRYAIRVWLDRTRLAARNITVAEVEQALRQNNVELPAGSVDSSTRNFTVRAEG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +   ++     G          N+   +   +   
Sbjct: 233 RLS--------------------NVEDFRNLVIRRDGNDLLRLGEVANVQVGVESDVGRL 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +     +        +R    P                S   
Sbjct: 273 RANGETAIGMGVIRQSKANTVAVSDAVKAELVKIRETLPPEVRIAESYDESVFIRASIKE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV++V+F+ +   +  L+   +I + VI     L  LG ++ + ++  I+
Sbjct: 333 VLTTLAIAVSLVILVIFLFLRSWRATLIPAVTIPVAVIGAFIGLGFLGFSINVLTLLAII 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I+    + +    +   G  +    +  + +T +   V + F G
Sbjct: 393 LAIGLVVDDAIVMLENIQRRIDEGEPPLLAAYRGAKQVAFAVIATTLTLVAVFVPISFMG 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    F  T+  ++++S   A+++   +    +R+    +      +    I + +
Sbjct: 453 GNVGRLFAEFGFTLAAAVVVSSLVALTLAPMLCSKWLRHSPDSAEGHRLWAFSERILNGL 512

Query: 539 AIQFMRA 545
              + R 
Sbjct: 513 TNGYQRM 519



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 87/250 (34%), Gaps = 7/250 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    N  + L  V +    ++      +        +  ++    ++VA +  ++   
Sbjct: 244 VIRRDGNDLLRLGEVANVQVGVESDVGRLRANGETAIGMGVIRQSKANTVAVSDAVKAEL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAIT 698
            KI E +P               R  I++ +  + I+   +++ I      W   L    
Sbjct: 304 VKIRETLPPEVRIAESYDESVFIRASIKEVLTTLAIAVSLVILVIFLFLRSWRATLIPAV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ + +          G   N+  + A++  IG  V+D +V+ + +    +         
Sbjct: 364 TIPVAVIGAFIGLGFLGFSINVLTLLAIILAIGLVVDDAIVMLENI---QRRIDEGEPPL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFI 815
               +   +     + T++      +P++  GG+V      F   +A  +VV++  ++ +
Sbjct: 421 LAAYRGAKQVAFAVIATTLTLVAVFVPISFMGGNVGRLFAEFGFTLAAAVVVSSLVALTL 480

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 481 APMLCSKWLR 490



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 68/164 (41%), Gaps = 7/164 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ I + + +  +F+ W   L  + ++ L +T  L   A  GI  N+ +   ++ L+G 
Sbjct: 860  GLAFIIVFLVLAAQFESWIHPLIIMLSVPLAVTGALIALAWSGISLNIYSQIGIIMLLGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ +      +L       ++ I +  +      + T+++     +P+ +    
Sbjct: 920  MAKNGILIVEFAN---QLRDKGYEVKEAILEGASLRFRPVLMTTISTVFGAVPLVIATGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G     +  + +  G++ A + ++FI   +   +  +   +  +
Sbjct: 977  GAESRAAIGMVILGGLIFATTLTLFIIPVLYNLLARFAKSSNAV 1020


>gi|261212454|ref|ZP_05926739.1| protein-export membrane protein SecD [Vibrio sp. RC341]
 gi|260838385|gb|EEX65041.1| protein-export membrane protein SecD [Vibrio sp. RC341]
          Length = 612

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 150/512 (29%), Positives = 259/512 (50%), Gaps = 25/512 (4%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            +   S+  ++   +  + I LGLDLRGG   +L VD D       +   D ++  L+ E
Sbjct: 113 TYSYVSVAPKWLDNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRESMIDAVKDSLRTE 172

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            +   S+    N     F     +    + V  +LQ        +  +   +      + 
Sbjct: 173 RLRGVSIAAFGND---GFEVKAEQPQALNHVRKYLQ--------ENYRGWDIRQGSDHLQ 221

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ + 
Sbjct: 222 VQPSQQNKTEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAKN 281

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA ++F++     +     F    L D  G   ++  +  +SG H+  A A  D  
Sbjct: 282 VIGATASLAFYEAKS--ATDARSFDDLILADGSGRPVILAKRPVLSGEHIVNARAGVDNM 339

Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
               V        G            +    V R+         +    + +    Q+  
Sbjct: 340 GMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNTRGETVRSEKVISVATIQSQL 399

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+ 
Sbjct: 400 GSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMA 459

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432
           + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N+
Sbjct: 460 MTLTFMALWYRRLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 519

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+ ERIR++  + ++   ++D GF  A+STI D+N+T +I  V+L+  G G ++GFA+T+
Sbjct: 520 LIFERIRDKLGEGRNFAQAIDTGFDSAFSTILDANVTTMITAVILYSIGNGPIQGFALTL 579

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GL +L SMF+ +   RA++  +      + + 
Sbjct: 580 GLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLINMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LGE---GRNFAQAIDTGFDSAFSTILDANVTTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|212634063|ref|YP_002310588.1| preprotein translocase subunit SecD [Shewanella piezotolerans WP3]
 gi|212555547|gb|ACJ28001.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Shewanella piezotolerans WP3]
          Length = 604

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 150/517 (29%), Positives = 265/517 (51%), Gaps = 32/517 (6%)

Query: 24  PNFLPQSMLDRFPSA---MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF 80
           P+ L   +    P+    +  + I LGLDLRGG   +L+V+ +         + D +R F
Sbjct: 103 PSELTLMLAPAAPNWMLSLGVSPIKLGLDLRGGVQFLLDVEIEPVYKLHYNTFVDSVRQF 162

Query: 81  LKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
           ++ E +   +++Q + +++ ++ +DS  ++ +   ++                  L    
Sbjct: 163 VRDESLTGVAVQQLVGDRVQITTSDSNHRQALRAFISQRYPNWQ-----------LSNNG 211

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +S+VLS    + +    ++Q+++I+R RI+Q+GI+E+ +QR G  RI I+LPG QDP
Sbjct: 212 ANSLSVVLSATEKNNIQDLTVKQNLQIMRSRIEQLGITEAVVQRQGEQRIRIELPGVQDP 271

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           +  + ++G TA ++F++V+  NS        + L D  G    V  +  + G H+  A A
Sbjct: 272 AEAKSVIGATASLAFYQVMQPNSIN-----SKKLNDEQGQPVSVARRAVLGGEHIVDARA 326

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-------- 311
                    VV     + G +       +          +        ++Q+        
Sbjct: 327 QLGEMGLPEVVIHLDRDGGKKMSDFSRANIGKPMATSYSEYSRDEQGKVSQSTKVISVAT 386

Query: 312 ---IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                  +  I+G     +A  LA +LRAGS+   + IVEER +G  LG ++I  G  A+
Sbjct: 387 IRSQLGDRFSITGAGDYASAQQLALLLRAGSMTAPVTIVEERTIGPSLGEENITNGFAAL 446

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
             G+   +LFM + Y + G +A+ ++  N++L   LL+L+  A LTLP IAG+VL +G+A
Sbjct: 447 ALGMAFTLLFMGLWYRRLGWIANVALLSNMVLLFGLLALIPGAVLTLPGIAGLVLTVGMA 506

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ERI+++ R+ +S   ++D GF  A+STI D+N T +I  VVL+  G G ++G
Sbjct: 507 VDTNVLIFERIKDKLREGRSFAHAIDRGFDSAFSTIIDANFTTMITAVVLYSIGNGPIQG 566

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           FA+T+GL +L SMFT I   RA++ ++      + + 
Sbjct: 567 FALTLGLGLLTSMFTGIFASRALVNWVYGRDFRRDVK 603



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 77/176 (43%), Gaps = 5/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  E I  G   + +     L+++ + ++      A   L+ ++    G  AL  
Sbjct: 429 TIGPSLGEENITNGFAALALGMAFTLLFMGLWYR-RLGWIANVALLSNMVLLFGLLALIP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  ++      SF   ID+  +      + 
Sbjct: 488 GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLRE---GRSFAHAIDRGFDSAFSTIID 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +    I+ + +   G   I  FA+ +  G++ +  + IF +  ++ ++Y    + 
Sbjct: 545 ANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALVNWVYGRDFRR 600


>gi|239932401|ref|ZP_04689354.1| preprotein translocase subunit SecF [Streptomyces ghanaensis ATCC
           14672]
 gi|291440768|ref|ZP_06580158.1| secF [Streptomyces ghanaensis ATCC 14672]
 gi|291343663|gb|EFE70619.1| secF [Streptomyces ghanaensis ATCC 14672]
          Length = 371

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/309 (29%), Positives = 149/309 (48%), Gaps = 13/309 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    I   F++ R    GIS+L +I +I  L   GL+ GI+F+GG       N  V +
Sbjct: 10  RLHHGEIGYDFIKNRKIWYGISVLVTITAIVGLAVRGLHMGIEFQGGAVFTTPKNMSVSV 69

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +      E     D   Q         +R+Q    D+ A  R+ + + + +      +  
Sbjct: 70  ATAERYAEDASGHDAIVQKLGDG---SMRIQVAGIDTGASDRIKDTLAQDLE---VDAEQ 123

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            N E+VGP    ++  K   G+ I  + M+IY+ I F+W  A+ A   LI DIT T+G +
Sbjct: 124 INAELVGPSWGEQIANKAWQGLGIFMVLMVIYLAIAFEWRMAVAAFIALIHDITITVGIY 183

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           AL G E     V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ ++SIN TL
Sbjct: 184 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDITKQTRWTYSEVANRSINSTL 243

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RSV T++ A + V  +   GG V     +   ++ +  G+   A SSIFIA P++  + 
Sbjct: 244 VRSVNTTVVALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLK 303

Query: 825 DWRAKNARI 833
           +       +
Sbjct: 304 EREPAMKTL 312


>gi|167623129|ref|YP_001673423.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167353151|gb|ABZ75764.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella halifaxensis HAW-EB4]
          Length = 1052

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/595 (12%), Positives = 167/595 (28%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ +++  +GL+       P   +  FP   P                      
Sbjct: 9   RPKFAFVISTVLTLVGLIAI-----PVLSVSEFPEIAPPQV---------SVSTSYSGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++             +  + ++F      +    KV   +Q 
Sbjct: 55  ADIVKDTIAQPLEAEVNGVEGMLYMESKSANDGSYSLNVTFEVGTDADMAQVKVQNRVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + K+  +    +    +++           ++  +        D +       
Sbjct: 115 AMPRLPEEVKRQGVKVEKQSPNMLMVVNLVSPNETFDSLFITNYAGLNVKDALARQYGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    DP ++  L  T   +       N        G   +      QY
Sbjct: 175 KVQVIGALDYAMRIWLDPDKMASLGVTATDVIAALQEQNIQVAAGRIGAAPVDPEQQFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  +                 +    +        +        +           
Sbjct: 235 TLQTKGRL-------------KDPKEFYDVMIRANNDGSKVVVGDVARVELGSQTYDAQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +        L           V          S   
Sbjct: 282 KLNNKPSAIIAIYQSPDANALEVGKAIKAEMENLSERFPNDLEYEVLYDTTEFVETSIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+F+ +   +  LV   +I +++I T A L     ++   S+  ++
Sbjct: 342 VVQTLFISISLVVLVVFIFLQDVRSTLVPAIAIPVSLIGTFAFLLAFDMSINTVSLFALI 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +           I  + +  L         
Sbjct: 402 LAIGIVVDDAIVVVENVTRLMQDEGLSPKEATSKAMKEVTGPIIATTLVLLAVFAPTAVM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     F++T+ +S+LIS   A+++  A+   ++  +  K+      + F    + 
Sbjct: 462 PGITGQMYAQFSVTICISVLISSINALTLSPALCASLL--RPPKTHTKGFHAVFNKYFER 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
              ++M+          +  +  ICL+   G    I   G + +       VD+ 
Sbjct: 520 FTGKYMKLVSLLTRKLAIVGVVYICLIVVTGGVAKILPSGFVPMEDKKAFMVDIQ 574



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 80/271 (29%), Gaps = 16/271 (5%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                        +       V LS + +    L    ++  N                  
Sbjct: 775  YRNSDRDISRFYVRSNTGEMVPLSTLVTVTPILGPDVMNNYNMFSSTTINGFPAPGFSSG 834

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-- 686
             A T +     + +                 +  +E+    +  +I S   +  Y+++  
Sbjct: 835  DAITAMERAANESLPAGYTF-------EWTGQTYQEIKAGNLAPLIFSLALVFTYLFLVA 887

Query: 687  -RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W      I  + + +        L G + NL A   ++ LIG +  + +++ +  +
Sbjct: 888  QYESWTIPFAVILAVPIAVLGAFLNILLVGSDLNLYAQIGLVLLIGLACKNAILIVEFAK 947

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
               +L+    S  D    +        + T+ +  + VLP+ +    G     +    + 
Sbjct: 948  ---QLHEEGKSILDAAQTAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGSRRALGYSVF 1004

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G++ A      +     + +   R K   +
Sbjct: 1005 GGMLAATIVGTLLVPVFYVIMQKMREKAKGL 1035



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 84/207 (40%), Gaps = 8/207 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +E + ++    +    + +T        +E+++   + + +  + + I++    
Sbjct: 306 KAIKAEMENLSERFPNDLEYEVLYDTTEFVETSIKEVVQTLFISISLVVLVVFIFLQ--- 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + +  T  F   F +  N  ++ A++  IG  V+D +VV + +    
Sbjct: 363 DVRSTLVPAIAIPVSLIGTFAFLLAFDMSINTVSLFALILAIGIVVDDAIVVVENV--TR 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S ++   K++ E  G  + T++       P AV     G +   F++ +   +
Sbjct: 421 LMQDEGLSPKEATSKAMKEVTGPIIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICISV 480

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++++ +++ ++  +   +      + +
Sbjct: 481 LISSINALTLSPALCASLLRPPKTHTK 507


>gi|301020511|ref|ZP_07184598.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           69-1]
 gi|331665133|ref|ZP_08366034.1| multidrug resistance protein MdtF [Escherichia coli TA143]
 gi|300398699|gb|EFJ82237.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           69-1]
 gi|331057643|gb|EGI29629.1| multidrug resistance protein MdtF [Escherichia coli TA143]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|331655135|ref|ZP_08356134.1| multidrug resistance protein MdtF [Escherichia coli M718]
 gi|331047150|gb|EGI19228.1| multidrug resistance protein MdtF [Escherichia coli M718]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|300907331|ref|ZP_07124981.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           84-1]
 gi|301304847|ref|ZP_07210952.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           124-1]
 gi|300400908|gb|EFJ84446.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           84-1]
 gi|300839871|gb|EFK67631.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           124-1]
 gi|315256116|gb|EFU36084.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           85-1]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|218707143|ref|YP_002414662.1| multidrug transporter, RpoS-dependent [Escherichia coli UMN026]
 gi|293407131|ref|ZP_06651055.1| multidrug resistance protein mdtF [Escherichia coli FVEC1412]
 gi|293412944|ref|ZP_06655612.1| aminoglycoside/multidrug efflux system [Escherichia coli B354]
 gi|298382880|ref|ZP_06992475.1| multidrug resistance protein mdtF [Escherichia coli FVEC1302]
 gi|300898185|ref|ZP_07116542.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           198-1]
 gi|218434240|emb|CAR15158.1| multidrug transporter, RpoS-dependent [Escherichia coli UMN026]
 gi|291425942|gb|EFE98976.1| multidrug resistance protein mdtF [Escherichia coli FVEC1412]
 gi|291468591|gb|EFF11084.1| aminoglycoside/multidrug efflux system [Escherichia coli B354]
 gi|298276716|gb|EFI18234.1| multidrug resistance protein mdtF [Escherichia coli FVEC1302]
 gi|300358101|gb|EFJ73971.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           198-1]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|218702279|ref|YP_002409908.1| multidrug transporter, RpoS-dependent [Escherichia coli IAI39]
 gi|300940140|ref|ZP_07154748.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           21-1]
 gi|218372265|emb|CAR20127.1| multidrug transporter, RpoS-dependent [Escherichia coli IAI39]
 gi|300455077|gb|EFK18570.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           21-1]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|88759142|dbj|BAE79898.1| inner membrane protein VmeB [Vibrio parahaemolyticus]
          Length = 1053

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/690 (10%), Positives = 181/690 (26%), Gaps = 46/690 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G++           + ++P+  P             + + +    
Sbjct: 8   RPVFAWVLAILTMLAGIMSLF-----NLPVSQYPTISP-------------TTITISARY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGASAKTVEDSVTQVIEQNMTGLDYLRYLSSSSDAFGNATITLTFDSEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L ++ +   +V        +++     D       + +  ++    D I   
Sbjct: 110 KLQLALTSLPMEVQSQGIVVNKSNTSFLMVVAVYSDDPDFTQNDIADFVVTNIQDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP +L Q   T   ++      N        G    +   
Sbjct: 170 TGVGQVQAFGSQ-YAMRVWLDPFKLTQFNLTAIDVANAISEQNAQVSSGQLGAAPAQKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S +              +    I   +      +      I +     
Sbjct: 229 LLNATISSASRLSSVA-------------EFQNIILKSDASGANVYLRDVARIERGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    S     +   T        A L                      
Sbjct: 276 DIQGQYNGLPASGLGISLGTGANALETAAAVKERLAELSENFPDGLKVAYPFETTPFVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  ++   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIQEVVKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLGTFAILYATGFSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +        +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEDGLDPKEATKKSMGQITGALIGVGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPL 528
           + F  G      R F+IT+  ++ +S+  AI +  A+   +++         K       
Sbjct: 456 MAFMSGSTGVIYRQFSITIVAAMTLSVMVAIILTPALCATLLKKGDAEFTDKKGFFGWFN 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +F  +         +       + ++F   S    +              Q  V +   
Sbjct: 516 RKFDSMTAGYEAGVAKLLKRTGRMLLVFVAMSAGAGWLFMNLPTSFLPDEDQGTVFSMAI 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +  +  +   E       S+   + + N              Q + + M    + +    
Sbjct: 576 LPPNSTQEQTEKTLDKVRSYFLEEEKDNVRSVFTVAGFSFAGQGQNMGMAFIGLKDWSER 635

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAI 678
               +        +          ++ +  
Sbjct: 636 EAPGSDAASLTGRAMGYFSTIKEAMVFAFA 665



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +  DI  Q      + L        +++     ++    +++E  P
Sbjct: 259 NVYLRDVARIERGAESYDIQGQYNGLPASGLGISLGTGANALETAAAVKERLAELSENFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                             I++ +  ++ + + + + +++  + +   +     + + +  
Sbjct: 319 DGLKVAYPFETTPFVEASIQEVVKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T       G   N   + A++  IG  V+D +VV + +     ++   +  ++   KS+ 
Sbjct: 379 TFAILYATGFSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEDGLDPKEATKKSMG 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  +   +      +PMA   GS       F+I +   + ++   +I +   +   +
Sbjct: 437 QITGALIGVGLTLSAVFVPMAFMSGSTGVIYRQFSITIVAAMTLSVMVAIILTPALCATL 496

Query: 824 YDW 826
              
Sbjct: 497 LKK 499



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 75/244 (30%), Gaps = 9/244 (3%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 +      +       V  S   S   +     +   N     N            
Sbjct: 776  FRMQPEDFNSWYVRNAQGEMVPFSAFASGEWTYGSPQLQRFNGLAAMNIQGGAAPGVSTG 835

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   +  MV++            + E         ++   +  +++  +   +Y     
Sbjct: 836  EAMAEIEAMVEQLPEGFTVNWNGISYEERLSGNQAPMLY-ALSILVVFLVLAALYESWSV 894

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L     ++  +   LG     G++ ++    ++LT +G +  + +++ +  ++  
Sbjct: 895  PLAVVLVVPLGVLGAVLAVLG----RGMDNDVFFQVSLLTTVGLATKNAILIVEFAKEY- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
              Y       +    ++   L   + TS+A  + V+P+A+  G         +  G++  
Sbjct: 950  --YEKGAGLIEATLHAVRVRLRPIIMTSLAFGLGVVPLAISAGVGSAGQN-AVGTGVLGG 1006

Query: 809  ASSS 812
              S+
Sbjct: 1007 MISA 1010


>gi|324009296|gb|EGB78515.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           57-2]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPVEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|306816135|ref|ZP_07450273.1| multidrug transporter, RpoS-dependent [Escherichia coli NC101]
 gi|305850531|gb|EFM50988.1| multidrug transporter, RpoS-dependent [Escherichia coli NC101]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPVEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|269104733|ref|ZP_06157429.1| protein-export membrane protein SecD [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161373|gb|EEZ39870.1| protein-export membrane protein SecD [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 587

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 165/515 (32%), Positives = 265/515 (51%), Gaps = 34/515 (6%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           L  ++    P  +       I LGLDLRGG   +L+VD +       Q  +D+LR+  +K
Sbjct: 89  LTLALEPAAPMWLQDMGFEPIKLGLDLRGGVQFLLDVDVNQVFKVQGQSLADDLRADFRK 148

Query: 84  EGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           EGI    +     +K+ +    S     I   V                           
Sbjct: 149 EGIRAARIEIMAADKLLVRLPSSDANSKIRHFVEQQYPQWQP-----------TNGNGDN 197

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + + L +    ++ +  ++Q+++ +R RI+++GI+E+ +QR G +RI I+LPG QDP+  
Sbjct: 198 LILTLKEKEQTELRNLTVQQNLQTMRSRIEELGITEAVVQRQGENRIRIELPGVQDPAAA 257

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           ++++G TA ++F+ V               L D  G    V  K  +SG H+  A A F 
Sbjct: 258 KKVIGATASLAFYAVKQ-----EGTGSTMVLDDKQGRPVRVGRKPVLSGDHIIDARAGFG 312

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQ 310
             +  P V+I+ D  G     E +R NIGKP+A                          Q
Sbjct: 313 EMST-PEVNITLDSAGGHIMSEFSRHNIGKPMATSYSEYSRNDKGETVQTNTIISVATIQ 371

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
           +    + +I+G  ++E A  LA +LRAGSL   + IVEER +G  LG+++I  G  A+  
Sbjct: 372 SQLGSRFRITGAGSLEDAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALAL 431

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVD 429
           G+ + +LFM V Y + G VA+ ++  N+I+   LL+L+  A LTLP IAG+VL +G+AVD
Sbjct: 432 GMGVTLLFMAVWYRRLGWVANIALICNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVD 491

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +N+L+ ERI+++ ++ +S   ++D GFS A+STIFD+N T +I  VVL+  G G ++GFA
Sbjct: 492 TNVLIFERIKDKLKEGRSFAQAIDRGFSSAFSTIFDANFTTMITAVVLYAIGNGPIQGFA 551

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +T+GL +L SMFT I   RA++  +        + 
Sbjct: 552 LTLGLGLLTSMFTGIFASRAIINLVWGRDSRHDVR 586



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 40/260 (15%), Positives = 97/260 (37%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  +        S    N +   +   +  +    ++ L       G    +
Sbjct: 328 GHIMSEFSRHNIGKPMATSYSEYSRNDKGETVQTNTIISVATIQSQLGSRFRITGAGSLE 387

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I+ G   + +     L+++ + ++  
Sbjct: 388 DAQQLALLLRAGSLTAPVTIVEERTIGPTLGAENIKNGFAALALGMGVTLLFMAVWYR-R 446

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++  +K 
Sbjct: 447 LGWVANIALICNMIMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE 506

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                SF   ID+  +         +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 507 ---GRSFAQAIDRGFSSAFSTIFDANFTTMITAVVLYAIGNGPIQGFALTLGLGLLTSMF 563

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  I+  ++   +++
Sbjct: 564 TGIFASRAIINLVWGRDSRH 583


>gi|209885440|ref|YP_002289297.1| OqxB [Oligotropha carboxidovorans OM5]
 gi|209873636|gb|ACI93432.1| OqxB [Oligotropha carboxidovorans OM5]
          Length = 1056

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/600 (12%), Positives = 168/600 (28%), Gaps = 41/600 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               ++L  ++  +G +           +  +P   P               +V+     
Sbjct: 11  PILAMVLSIVLLIVGAIA-----YTTLPVAEYPQVAPPT-------------VVITTQYP 52

Query: 64  DFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLF 118
                 + +  +  +   +   E +     +   N    IT++F      +     V   
Sbjct: 53  GASAQTVSETVAAPIEQEVNGVENMLYMYSQATSNGQLTITVTFKLGTDLDQAQVLVQNR 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  + K+N +VT       +++            +  S   + Q  DQ+  ++
Sbjct: 113 VAIAQPRLPEEVKRNGVVTRKNSPDLLMVVFLLSPDDTFDQLYISNYALLQVRDQLLRTD 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP ++  L  T   +       N    G       + D   
Sbjct: 173 GVGDIQIFGARDYSMRLWLDPDKIANLGMTAGDVLTAIRAQNLQIAGGRIAEPPISDRAF 232

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              L                        +    I       R         I        
Sbjct: 233 QPNLTFQG--------------RLKDPEQFENIILKSGENGRTVRLRDVARIELAALSYD 278

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L        + + +   +   T E      A L+          +          S
Sbjct: 279 TNAFLLRKEAVAILVTQRPGSNALATSERISNTMASLKEKFPEGLDYNIGYNPTEFIAQS 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV++V+ + +   +  ++   +I +++I T A+++ LG  +   ++ 
Sbjct: 339 VHELIKTIYEAMILVVVVVLVFLQGWRPAIIPILAIPVSLIGTFAVMAALGFAINNLTLF 398

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATV 475
           G+VL +G+ VD  I+V E +    +   +   +  +       A  +I        + T 
Sbjct: 399 GLVLAVGIVVDDAIVVVENVERHLQAGMTRRDAALLTMQEVGGALVSIALVLCAVFVPTA 458

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            L    G   + FA+T+ ++  IS F ++++  A+   I+     K              
Sbjct: 459 FLGGISGQFFQQFAVTIAVATAISCFCSLTLSPALASLILEAHHEKKPPARWNVIA-RWW 517

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 F R   W        +  +I         YG+       +     +    +  R
Sbjct: 518 GIFTGYFNRGFDWLSHFYARAADFTIRHSVAMLALYGVLIGSAGWIMFSTPKGFIPAQDR 577



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/427 (11%), Positives = 122/427 (28%), Gaps = 12/427 (2%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            L G +    + A     +    D   L  ++  +   +  +          +A+  +   
Sbjct: 618  LAGFSGATRTQASNAAAMFPVFDDPELRAKKAGQSAAEITNELRKRLSKIEKAFIIVVPP 677

Query: 467  NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
                 I T   F       +G   ++  +    +  A +    +      +         
Sbjct: 678  PAVPGIGTGGGFAMRIEDRQGRGASLLAAATSELVAAANKTPGLTAVFSPFTANTPQVFV 737

Query: 527  PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             + R       + +Q +         S   +  ++                     +   
Sbjct: 738  DIDRQKAEMLGVPVQNVTEAIEIYFGSAYVNDFNLFGRTYRVTAQADLPFRKESTDLARL 797

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS--VAQTRVLEMVKKKITE 644
            R  +L+     L S+             +  L       GD+     +       KK+  
Sbjct: 798  RTRNLAGEMVLLGSVVDFRDISGPDRVARYNLYPAAELQGDTLPGTSSATAIEEMKKLAA 857

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILD 703
             +  S                   G+    +  + + + +  ++  W   L  I  + + 
Sbjct: 858  DILPSGFSYDWTDLSYQQVTAANAGLYVFPVCVLFVFLVLAAQYGSWTLPLSVILIVPMC 917

Query: 704  IT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   T+G   L G + N+      + L+G +  + +++ +  R   +           + 
Sbjct: 918  LLTATIGV-RLMGQDINILTQIGFVVLVGLAAKNAILIVEFARDIERE---GKDTLHAVI 973

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS A  + VLP+ +    G  +  +  + + FG++      + +  PI
Sbjct: 974  EACRLRLRPILMTSFAFILGVLPLVISSGSGSEMRQAVGVAVFFGMIGVTLFGL-VFTPI 1032

Query: 820  LLFIYDW 826
               +   
Sbjct: 1033 FYMLVRK 1039



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 79/206 (38%), Gaps = 15/206 (7%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             S   +  +  +K+K  E +  +   N      +   ELI+     +I+  + +L+++ 
Sbjct: 303 ATSERISNTMASLKEKFPEGLDYNIGYNPTEFIAQSVHELIKTIYEAMILVVVVVLVFLQ 362

Query: 686 IRFKWYFALGAITTLILDIT---KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
               W  A+  I  + + +          A  G   N   +  ++  +G  V+D +VV +
Sbjct: 363 ---GWRPAIIPILAIPVSLIGTFAV---MAALGFAINNLTLFGLVLAVGIVVDDAIVVVE 416

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAI 799
            +    +     ++ RD    ++ E  G  V  ++      +P A  G   G     FA+
Sbjct: 417 NV---ERHLQAGMTRRDAALLTMQEVGGALVSIALVLCAVFVPTAFLGGISGQFFQQFAV 473

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYD 825
            +A    ++   S+ ++  +   I +
Sbjct: 474 TIAVATAISCFCSLTLSPALASLILE 499


>gi|163853624|ref|YP_001641667.1| protein-export membrane protein SecF [Methylobacterium extorquens
           PA1]
 gi|240141046|ref|YP_002965526.1| putative protein-export membrane protein, SecD/SecF family
           [Methylobacterium extorquens AM1]
 gi|254563560|ref|YP_003070655.1| hypothetical protein METDI5230 [Methylobacterium extorquens DM4]
 gi|163665229|gb|ABY32596.1| protein-export membrane protein SecF [Methylobacterium extorquens
           PA1]
 gi|240011023|gb|ACS42249.1| putative protein-export membrane protein, SecD/SecF family
           [Methylobacterium extorquens AM1]
 gi|254270838|emb|CAX26843.1| putative protein-export membrane protein, SecD/SecF family
           [Methylobacterium extorquens DM4]
          Length = 314

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 109/301 (36%), Positives = 175/301 (58%), Gaps = 7/301 (2%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN- 586
           +    L PD     FMR R     +S + S+ ++ L  T GLNYGIDFKGG  + + A  
Sbjct: 1   MRLLRLWPDESHFDFMRFRRVTFPLSAVMSVVTLVLFITVGLNYGIDFKGGTLVELQAKA 60

Query: 587 -RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +  D++ +R        G+   Q   GE   LVR   Q G+         +++K     
Sbjct: 61  GQKADVAEIRHTANGFGFGETEVQELGGEGQVLVRFPLQAGEQGQTA----VMQKAHAAF 116

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 + TE VGP++S EL++ G +GV++S +A+L+Y+W RF+   ALGAI   + DI 
Sbjct: 117 DASYDFRRTETVGPRVSGELVQSGTIGVVLSVLAVLLYLWFRFERELALGAIVGTLHDIV 176

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T+G F +  IEFN+T++AA+LT++GYS+N+ VVV+DR R+ M+ Y  +I   +L++ SI
Sbjct: 177 LTVGVFIITRIEFNMTSIAAILTIVGYSLNETVVVFDRTRELMRRY-KTIPVVELLNLSI 235

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           N T+ R+V TS++  +S++ + ++GG  I  FA+ M  G+V+   S+IF++ P L++I  
Sbjct: 236 NSTMSRTVMTSLSTTLSLVALVLFGGEAIKGFAVVMLCGVVICTYSAIFVSTPSLIYIGL 295

Query: 826 W 826
            
Sbjct: 296 R 296


>gi|117625797|ref|YP_859120.1| putative multidrug transporter MdtF, RpoS-dependent [Escherichia
           coli APEC O1]
 gi|215488791|ref|YP_002331222.1| multidrug transporter, RpoS-dependent [Escherichia coli O127:H6
           str. E2348/69]
 gi|218560589|ref|YP_002393502.1| multidrug transporter, RpoS-dependent [Escherichia coli S88]
 gi|237703281|ref|ZP_04533762.1| multidrug resistance protein mdtF [Escherichia sp. 3_2_53FAA]
 gi|312968165|ref|ZP_07782375.1| inner membrane protein [Escherichia coli 2362-75]
 gi|331649332|ref|ZP_08350418.1| multidrug resistance protein MdtF [Escherichia coli M605]
 gi|331659819|ref|ZP_08360757.1| multidrug resistance protein MdtF [Escherichia coli TA206]
 gi|115514921|gb|ABJ02996.1| putative multidrug transporter MdtF, RpoS-dependent [Escherichia
           coli APEC O1]
 gi|215266863|emb|CAS11304.1| multidrug transporter, RpoS-dependent [Escherichia coli O127:H6
           str. E2348/69]
 gi|218367358|emb|CAR05137.1| multidrug transporter, RpoS-dependent [Escherichia coli S88]
 gi|222035224|emb|CAP77969.1| Multidrug resistance protein mdtF [Escherichia coli LF82]
 gi|226902545|gb|EEH88804.1| multidrug resistance protein mdtF [Escherichia sp. 3_2_53FAA]
 gi|294490854|gb|ADE89610.1| multidrug resistance protein MdtF [Escherichia coli IHE3034]
 gi|312286990|gb|EFR14900.1| inner membrane protein [Escherichia coli 2362-75]
 gi|312948073|gb|ADR28900.1| multidrug transporter, RpoS-dependent [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315286161|gb|EFU45597.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           110-3]
 gi|315296036|gb|EFU55345.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           16-3]
 gi|320193974|gb|EFW68607.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli WV_060327]
 gi|323188892|gb|EFZ74176.1| inner membrane protein [Escherichia coli RN587/1]
 gi|323954723|gb|EGB50504.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli H263]
 gi|330909565|gb|EGH38079.1| RND efflux system, inner membrane transporter CmeB [Escherichia
           coli AA86]
 gi|331041830|gb|EGI13974.1| multidrug resistance protein MdtF [Escherichia coli M605]
 gi|331053034|gb|EGI25067.1| multidrug resistance protein MdtF [Escherichia coli TA206]
          Length = 1037

 Score =  190 bits (481), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPVEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|297198354|ref|ZP_06915751.1| protein-export membrane protein SecF [Streptomyces sviceus ATCC
           29083]
 gi|197714410|gb|EDY58444.1| protein-export membrane protein SecF [Streptomyces sviceus ATCC
           29083]
          Length = 370

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 14/309 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    I+  F+  R     ISIL +I +I  L   GLN GIDF+GG          V +
Sbjct: 10  RLHRGEISYDFIGHRKLWYSISILITITAILGLAVRGLNMGIDFQGGAVFT-TGKTSVSV 68

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S      +     D   Q         +R+Q    D+    R+   + K           
Sbjct: 69  SQAEEYAKEASGHDAVVQKLGNGT---LRIQIAGMDTQQSDRIKTDLAKDFK---VDPES 122

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              ++VGP    ++  K   G+ I  + ++IY+ I F+W  A+ A+  LI DIT T+G +
Sbjct: 123 IAADLVGPSWGDQIANKAWQGLAIFMVLVVIYLAIAFEWRMAIAALVALIHDITITVGIY 182

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           AL G E     V  +LT++GYS+ D VVV+D +++  K  T     ++ D+ ++SIN TL
Sbjct: 183 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDITKQNRWTYSDIANRSINGTL 242

Query: 770 GRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ T++ A + V  +   GG       +   ++ +  G+   A SSIFIA P++  + 
Sbjct: 243 VRSINTTVVALLPVAGLLFIGGGFLGAGTLNDISLSLFVGLAAGAYSSIFIATPLVADLK 302

Query: 825 DWRAKNARI 833
           +       +
Sbjct: 303 EREPAMKAL 311


>gi|82778655|ref|YP_405004.1| putative transport system permease protein [Shigella dysenteriae
           Sd197]
 gi|309785688|ref|ZP_07680319.1| multidrug resistance protein mdtF [Shigella dysenteriae 1617]
 gi|81242803|gb|ABB63513.1| putative transport system permease protein [Shigella dysenteriae
           Sd197]
 gi|308926808|gb|EFP72284.1| multidrug resistance protein mdtF [Shigella dysenteriae 1617]
          Length = 1039

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLTIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|110643760|ref|YP_671490.1| integral membrane protein YhiV [Escherichia coli 536]
 gi|191170515|ref|ZP_03032068.1| multidrug resistance protein MdtF [Escherichia coli F11]
 gi|300987464|ref|ZP_07178232.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           200-1]
 gi|110345352|gb|ABG71589.1| hypothetical integral membrane protein YhiV [Escherichia coli 536]
 gi|190909323|gb|EDV68909.1| multidrug resistance protein MdtF [Escherichia coli F11]
 gi|300306156|gb|EFJ60676.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           200-1]
 gi|324014466|gb|EGB83685.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           60-1]
          Length = 1037

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAELP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPVEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|254775914|ref|ZP_05217430.1| preprotein translocase subunit SecF [Mycobacterium avium subsp.
           avium ATCC 25291]
          Length = 379

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 132/318 (41%), Gaps = 15/318 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     A + +  R    GIS      +I  +   G  +GIDF GG  + + A
Sbjct: 38  RHSFLSRLYTGTGAFEVVGRRRLWFGISGAIVAVAILSIALRGFTFGIDFNGGTTVSMPA 97

Query: 586 ---NRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEM 637
              +  V  + V+         D       G                   +  +  + + 
Sbjct: 98  AGTHGTVHTAQVQEVFRKTLGTDPESVVVVGNGAAATVQIRSETLTNDQTTKLRNALFDA 157

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K  +  P     +   V      ++  K ++ +++    + +YI +R++ Y  L AI
Sbjct: 158 FGPKGADGKPSKQAISDSAVSETWGDQITDKALIALVVFLALVGLYITVRYERYMTLAAI 217

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSI 755
             +  D+T T G ++L G E     V  +LT++G+S+ D V+V+D++ +N +   +T   
Sbjct: 218 AAMFFDLTVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTRDFQHTNRR 277

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAAS 810
           +F +  + +IN+T  RS+ TS+   + VL +      + G   +   A+    GI+V   
Sbjct: 278 TFAEQANLAINQTFMRSINTSLIGVLPVLALMVVAVWLLGVGTLKDLALVQLVGILVGTY 337

Query: 811 SSIFIAAPILLFIYDWRA 828
           SSIF+A P+L+ + +   
Sbjct: 338 SSIFVATPLLVTLRERTE 355


>gi|86150907|ref|ZP_01069123.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315124574|ref|YP_004066578.1| protein-export membrane protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|85842077|gb|EAQ59323.1| protein-export membrane protein SecD [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315018296|gb|ADT66389.1| protein-export membrane protein [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 526

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 158/548 (28%), Positives = 288/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++  +   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 1   MRNSKINYRLIIFMAVFIFGVAFSLPSFLQSE---------RGAKINLGLDLQGGLYMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 52  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIAKVENLLKEI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + + +      I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 112 -------------KGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 159 PTVAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS 218

Query: 232 ------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++  V++ + +  G+++F + 
Sbjct: 219 YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYLVINFTLNAEGSKKFADY 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 339 LLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 399 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 459 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTR 518

Query: 526 NPLSRFFL 533
                   
Sbjct: 519 FWFGYRRR 526



 Score =  107 bits (266), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ +++++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGV-AGIFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRASIEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      K+ 
Sbjct: 458 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSN 515


>gi|91213020|ref|YP_543006.1| hypothetical protein UTI89_C4046 [Escherichia coli UTI89]
 gi|91074594|gb|ABE09475.1| hypothetical protein YhiV [Escherichia coli UTI89]
 gi|307628593|gb|ADN72897.1| multidrug transporter, RpoS-dependent [Escherichia coli UM146]
          Length = 1037

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        I           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTIYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTIYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPVEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|52842391|ref|YP_096190.1| multidrug-efflux system transmembrane protein [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52629502|gb|AAU28243.1| probable multidrug-efflux system transmembrane protein [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 1051

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/582 (11%), Positives = 165/582 (28%), Gaps = 40/582 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P  +P               + +    
Sbjct: 10  RPVFATVISIIIVMVGVLS-----YFNLPVEQYPQVVPPT-------------IQVYASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   E +     +   +   ++T++F      +     V  
Sbjct: 52  PGANAKTVAETVATPIEQEVNGVENMLYMDSQSTDDGQMRLTITFKLGTDLDQAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  KL  + ++  + T       +++                   I    D+I   
Sbjct: 112 RVAVVEPKLPEEVRRLGITTNKNSPDLMLVVNMYSPNGQYDQTYIGNYAILHIRDKIRRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     L        +    +P  +     T   +       N         ++  +   
Sbjct: 172 EGVGNVLVFGASEYAMRLWLNPDLMNTFNLTANDVLAAVRAQNVQVASGKLNLQPQKKQY 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G +Y +E K  +              K  +    I       R         +       
Sbjct: 232 GFEYHIETKGRL-------------VKKEEFENIIVKSGESGRIVRLKDIGRVELGTQNY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T +        +     P     +          
Sbjct: 279 LTKGYLDKYPAVALPIYQRPGTNALATAQEIIKTMKTIAKDFPPGITYDMAYNPTLFVQQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +   +   +I +++I T A++  +G +L   ++
Sbjct: 339 SIDAVFHTIYEAIALVVLVILIFLQTWRASAIPVVAIPVSLIGTFAVMQAIGFSLNYLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +    +   +   +     +   S +    +  +   +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERNIQAGMNPRDAARKTMTEVGSALVAMGLVLIAVFLPT 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + F  T+ ++  IS+F ++++   M + +       +I    L+ +   
Sbjct: 459 VFLEGISGRFYQQFGTTLAVATAISVFVSLTLTPTMAVLL-LRAHHGTIKQEGLAWWKKP 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                  F R                        + YGI   
Sbjct: 518 IYGFLHGFNRLMEGFSRQYGKLVATLTRKTALMIIAYGIFIS 559



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/446 (10%), Positives = 129/446 (28%), Gaps = 19/446 (4%)

Query: 402  LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
            +  +  +  T++    +G          +        +E  R   +    +     +  S
Sbjct: 607  ILAIPGIAHTVSFTGFSGATFTNSSNAGAIFTPLLSFQERQRMGINYND-ILKRLRQELS 665

Query: 462  TIFDSNITAL-------IATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMM 511
            TI ++ I  +       I     F        G  + + +    +M  A +      ++ 
Sbjct: 666  TIKEALIVVIPPPPVRGIGNAGGFKMMLQDRGGRGLDVLMEAAATMVNAANQEKATTSVF 725

Query: 512  IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
             F         + ++      L      +      + G      F+            + 
Sbjct: 726  TFFENSTPRLHLKLDREKVERLNVPYANVVEALEVYLGSVFINEFNYLGRTFRVIAQADS 785

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                     L +         V   ++  ++      +         + LQ       + 
Sbjct: 786  EYRHTEDDILRIKVKSNSGDMVPIGSVAQIENTVAPSRMPRFNLYPAIDLQGDVAPGYSS 845

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
               L  ++K     +P         +     + +    ++   +  I + + +  +++ W
Sbjct: 846  DEALVTMEKLAQNNLPDGIGYEWTEI-AYQQKMVGNTALMAFTLGVIFIFLVLAAQYESW 904

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + + +  ++    + G+E N+      L LIG +  + +++ +  R   +L
Sbjct: 905  SLPLAVILIVPMCLFSSMLGVKILGMENNIMTQIGFLVLIGLASKNAILIVEFAR---QL 961

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                 +      ++    L   + TS A  + V P+ +    G  +  +  + +  G++ 
Sbjct: 962  ENRGYNLWKAAIQAAKLRLRPILMTSFAFILGVFPLIISTGAGAEMRRALGVAVFSGMLG 1021

Query: 808  AASSSIFIAAPILLFIYDWRAKNARI 833
                 +       + I        ++
Sbjct: 1022 VTFFGLVFTPLFYVLISRLSRYKRKL 1047



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 69/203 (33%), Gaps = 9/203 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +    + ++ + K     +      N  +   +    +       + +  + +LI++ 
Sbjct: 304 ATAQEIIKTMKTIAKDFPPGITYDMAYNPTLFVQQSIDAVFHTIYEAIALVVLVILIFLQ 363

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  +   +  + + +  T       G   N   +  ++  IG  V+D +VV + M 
Sbjct: 364 ---TWRASAIPVVAIPVSLIGTFAVMQAIGFSLNYLTLFGLVLAIGIVVDDAIVVVENME 420

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
           +N++     ++ RD   K++ E     V   +      LP     G        F   +A
Sbjct: 421 RNIQA---GMNPRDAARKTMTEVGSALVAMGLVLIAVFLPTVFLEGISGRFYQQFGTTLA 477

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
               ++   S+ +   + + +  
Sbjct: 478 VATAISVFVSLTLTPTMAVLLLR 500


>gi|169794990|ref|YP_001712783.1| putative multidrug efflux protein [Acinetobacter baumannii AYE]
 gi|213158345|ref|YP_002320396.1| multidrug efflux protein [Acinetobacter baumannii AB0057]
 gi|215482540|ref|YP_002324730.1| Multidrug resistance protein mexB (Multidrug-efflux transporter
           mexB) [Acinetobacter baumannii AB307-0294]
 gi|88758812|emb|CAJ77864.1| Putative RND family drug transporter [Acinetobacter baumannii AYE]
 gi|169147917|emb|CAM85780.1| putative multidrug efflux protein [Acinetobacter baumannii AYE]
 gi|213057505|gb|ACJ42407.1| multidrug efflux protein [Acinetobacter baumannii AB0057]
 gi|213986645|gb|ACJ56944.1| Multidrug resistance protein mexB (Multidrug-efflux transporter
           mexB) [Acinetobacter baumannii AB307-0294]
          Length = 1031

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/691 (10%), Positives = 206/691 (29%), Gaps = 46/691 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   +        ++R+P   P               + +  +
Sbjct: 8   QRPIFANVLAIIVMAFGIFSVM-----NLPVERYPDIAPPK-------------ITVSAN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSSSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVIGLYDSTGKTGNIELSDYLTTHVVDNLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGETDIFGSQ-YAMRIWLNPDKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKSNKTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLVEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     +   S   +           +    +      +
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG      R F+IT+  ++ +S+  A+ +  A+   I++            ++  
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLIVALILTPALCALILKPNPQPQRWAVWFNQKI 515

Query: 533 LIPDCIAIQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                  I+        ++   V    L ++ ++            + +G + + +    
Sbjct: 516 EQLKNQYIKLVQTSIHYSKSVIVIFVALIAVFTLFYNGLKSGFIPKEDQGILSVQIKLVD 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +S  +   E ++   ++ ++ + +   +   +   G      +    +K        
Sbjct: 576 SAPISQSQKIGEQVRQYFLTQEDKNVDLVLIRYGRNYSGTGQNLAQGFIALKPWDVRTGK 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            ++ +  +    K         I   + +++
Sbjct: 636 ENSAEAIQKRAMKYFSHFNNAQINVTLPASV 666



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 8/212 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   +S ++   +S+ E  G  V  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   + ++   ++ +   +   I     +  R
Sbjct: 475 LVAAMALSLIVALILTPALCALILKPNPQPQR 506



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 77/246 (31%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 787  NDQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVASGSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             I           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DIGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             +      +  +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKNAIQAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFKSKA 1029


>gi|320158964|ref|YP_004191342.1| protein-export membrane protein SecD [Vibrio vulnificus MO6-24/O]
 gi|319934276|gb|ADV89139.1| protein-export membrane protein SecD [Vibrio vulnificus MO6-24/O]
          Length = 614

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 158/513 (30%), Positives = 272/513 (53%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     N I LGLDLRGG   +L VD D   +    + SDE+R+ L+ 
Sbjct: 114 ISFSYVSVAPQWLSDMGFNPIKLGLDLRGGVQFLLNVDVDKAFDEQRDVLSDEIRAMLRT 173

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +    +R      T   A         +KV+ +L+            N  V T    +
Sbjct: 174 EKLRGVQVRNTG---TAQLAVQSDNAVALEKVSNYLRS--------NYPNWQVRTHSDSL 222

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  S     +  +  ++Q+++I+R RI+++GI+E+ +QR G+H I I+LPG QDP++ +
Sbjct: 223 EVKPSDAYAAEFQTTTLQQNLKIMRGRIEELGITEALVQRQGAHSIRIELPGVQDPAQAK 282

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F+ V   +  +        L+D+DG   ++E +  ++G H+  A A  D 
Sbjct: 283 NVIGATASLAFYSVKSPSDARSG--DDLVLQDADGRSVVLEKRPVLTGEHIVNARAGVDK 340

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+   +    +     + +    Q+ 
Sbjct: 341 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYTTQENGDIARSERVISVATIQSQ 400

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  +++ A  LA +LRAGSL   ++IVEER +GA LG+++I  G  A+  G+
Sbjct: 401 LGSQFRITGAGSMDEAQQLALLLRAGSLTAPVSIVEERTIGASLGAENIQNGFAALALGM 460

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 461 GLTLTFMALWYRRLGWVANVALVANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 520

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +++ ERI+++ R+ +S+  ++D GF  A++TI D+NIT +I  VVL+  G G ++GFA+T
Sbjct: 521 VIIFERIKDKMREGRSLAQAIDSGFDSAFATILDANITTMITAVVLYAIGNGPIQGFALT 580

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMFT +   RAM+  +      +++ 
Sbjct: 581 LGLGLLTSMFTGVFASRAMINLVWGKDSRRNVR 613



 Score =  107 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 82/207 (39%), Gaps = 6/207 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    +I     +G  +  E I+ G   + +     L ++ + +
Sbjct: 412 SMDEAQQLALLLRAGSLTAPVSIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWY 471

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L+ ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 472 R-RLGWVANVALVANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 530

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      S    ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 531 MRE---GRSLAQAIDSGFDSAFATILDANITTMITAVVLYAIGNGPIQGFALTLGLGLLT 587

Query: 808 AASSSIFIAAPIL-LFIYDWRAKNARI 833
           +  + +F +  ++ L       +N R+
Sbjct: 588 SMFTGVFASRAMINLVWGKDSRRNVRV 614


>gi|284066973|gb|ADB77768.1| AdeB [Acinetobacter genomosp. 13]
          Length = 1035

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/634 (11%), Positives = 170/634 (26%), Gaps = 49/634 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 7   RRPVFAWVIAIFIIIFGLLSI-----PKLPIARFPSVAPP-------------QVNISAV 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +IT +F      E     V 
Sbjct: 49  YPGATAKTINDSVVTLIERELSGVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 109 NKIKAVEARLPQIVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 169 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S +              +        +            N+      
Sbjct: 228 QLITIPLSAQGQLSSVE-------------QFKNISLKSKTNGSVIKLSDVANVEIGSQA 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 275 YNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPEGMEFSIPYDTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 335 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  +   +         S I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERIMATEGLNPKEATSKAMKEITSPIIGITLVLAAVFL 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSID 524
            + F  G      + F +TM +SIL S   A+ +  A+   I         +       D
Sbjct: 455 PMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 514

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           +           V   ++  I    + +        + +G       
Sbjct: 515 RSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFAGMKYWPTAFMPEEDQGWFMTSFQ 574

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                     R+ +   +       +       L
Sbjct: 575 LPSDATTERTRNVVNQFEHNLKDNPDVKSNTTIL 608



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 87/239 (36%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V     +    +++   +P 
Sbjct: 260 IKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 320 GMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  ++ ++   K
Sbjct: 377 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLNPKEATSK 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPMA   GSV      F + M+  I+ +A  ++ +   +
Sbjct: 434 AMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPAL 492



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 785  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 844

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 845  GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 896

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 897  PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 953

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 954  TVAAAKLRLRPILMTSLAFTCGVIPLVIASGAS-SETQHALGTGVFGGMISATILA 1008


>gi|301050245|ref|ZP_07197136.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           185-1]
 gi|300298017|gb|EFJ54402.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           185-1]
          Length = 1037

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 145/521 (27%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +      +      +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEEKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEEKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPVEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|260901213|ref|ZP_05909608.1| RND transporter, HAE1 family [Vibrio parahaemolyticus AQ4037]
 gi|308106701|gb|EFO44241.1| RND transporter, HAE1 family [Vibrio parahaemolyticus AQ4037]
          Length = 1053

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/690 (10%), Positives = 182/690 (26%), Gaps = 46/690 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G++           + ++P+  P             + + +    
Sbjct: 8   RPVFAWVLAILTMLAGIMSLF-----NLPVSQYPTISP-------------TTITISARY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGASAKTVEDSVTQVIEQNMTGLDYLRYLSSSSDAFGNATITLTFDSEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L ++ +   +V        +++     D       + +  ++    D I   
Sbjct: 110 KLQLALTSLPMEVQSQGIVVNKSNTSFLMVVAVYSDDPDFTQNDIADFVVTNIQDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP +L Q   T   ++      N        G    +   
Sbjct: 170 TGVGQVQAFGSQ-YAMRVWLDPFKLTQFNLTAIDVANAISEQNAQVSSGQLGAAPAQKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S +              +    I   +      +      I +     
Sbjct: 229 LLNATISSASRLSSVA-------------EFQNIILKSDASGANVYLRDVARIERGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    S     +   T        A L                      
Sbjct: 276 DIQGQYNGLPASGLGISLGTGANALETAAAVKERLAELSENFPDGLKVAYPFETTPFVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  ++   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIQEVVKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLGTFAILYATGFSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +        +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEDGLDPKEATKKSMGQITGALIGVGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPL 528
           + F  G      R F+IT+  ++ +S+  AI +  A+   +++         K       
Sbjct: 456 MAFMSGSTGVIYRQFSITIVAAMTLSVMVAIILTPALCATLLKKGDAEFTDKKGFFGWFN 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +F  +        ++       + ++F   S    +              Q  V +   
Sbjct: 516 RKFDSMTAGYEAGVVKLLKRTGRMLLVFVAMSAGAGWLFMNLPTSFLPDEDQGTVFSMAI 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +  +  +   E       S+   + + N              Q + + M    + +    
Sbjct: 576 LPPNSTQEQTEKTLDKVRSYFLEEEKDNVRSVFTVAGFSFAGQGQNMGMAFIGLKDWSER 635

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAI 678
               +        +          ++ +  
Sbjct: 636 EAPGSDAASLTGRAMGYFSTIKEAMVFAFA 665



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +  DI  Q      + L        +++     ++    +++E  P
Sbjct: 259 NVYLRDVARIERGAESYDIQGQYNGLPASGLGISLGTGANALETAAAVKERLAELSENFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                             I++ +  ++ + + + + +++  + +   +     + + +  
Sbjct: 319 DGLKVAYPFETTPFVEASIQEVVKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T       G   N   + A++  IG  V+D +VV + +     ++   +  ++   KS+ 
Sbjct: 379 TFAILYATGFSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEDGLDPKEATKKSMG 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  +   +      +PMA   GS       F+I +   + ++   +I +   +   +
Sbjct: 437 QITGALIGVGLTLSAVFVPMAFMSGSTGVIYRQFSITIVAAMTLSVMVAIILTPALCATL 496

Query: 824 YDW 826
              
Sbjct: 497 LKK 499



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 75/244 (30%), Gaps = 9/244 (3%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 +      +       V  S   S   +     +   N     N            
Sbjct: 776  FRMQPEDFNSWYVRNAQGEMVPFSAFSSGEWTYGSPQLQRFNGLAAMNIQGGAAPGVSTG 835

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   +  MV++            + E         ++   +  +++  +   +Y     
Sbjct: 836  EAMAEIEAMVEQLPEGFTVNWNGISYEERLSGNQAPMLY-ALSILVVFLVLAALYESWSV 894

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L     ++  +   LG     G++ ++    ++LT +G +  + +++ +  ++  
Sbjct: 895  PLAVVLVVPLGVLGAVLAVLG----RGMDNDVFFQVSLLTTVGLATKNAILIVEFAKEY- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
              Y       +    ++   L   + TS+A  + V+P+A+  G         +  G++  
Sbjct: 950  --YEKGAGLIEATLHAVRVRLRPIIMTSLAFGLGVVPLAISAGVGSAGQN-AVGTGVLGG 1006

Query: 809  ASSS 812
              S+
Sbjct: 1007 MISA 1010


>gi|332308424|ref|YP_004436275.1| protein-export membrane protein SecF [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175753|gb|AEE25007.1| protein-export membrane protein SecF [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 328

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/289 (29%), Positives = 150/289 (51%), Gaps = 5/289 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 F + R  G  ++I   + S   L   GLN G+DF GG       ++ +D   ++
Sbjct: 26  HSPMAMFSKVRLAGFYLAISLMLLSAIGLGFKGLNLGLDFTGGYMTEFTTSQSIDKGQMQ 85

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L +   GD    +     ++ +R      D  A     + +    T+       Q++ 
Sbjct: 86  NQLGANLSGDFELSSSAANTHWTIRQ----ADGAAHVIDKDWLNTFATQSGYDIAPQDSV 141

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G ++  ELI  G + +I++A+AM+IY+  RF+W  A G++  L+ D+   LG FA  G
Sbjct: 142 YIGSQVGSELIDNGGLALIVAAVAMMIYLTWRFEWRLACGSLMALVHDVLVVLGLFAWLG 201

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           + F+LT +AAVL +IGYS+ND +V+ D++R+ M+   T++S  D++D ++  TL RS+ T
Sbjct: 202 LPFDLTVLAAVLAIIGYSLNDSIVIGDKLREVMRA-KTNMSMSDIVDTAVKSTLTRSLIT 260

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           S     ++  + ++GG  +  FAI +  G+V    SSI ++A I   I 
Sbjct: 261 SGTTLATIGAIWIFGGQPLQGFAIGLFAGVVFGTLSSIAVSATIPQLIG 309


>gi|319792180|ref|YP_004153820.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Variovorax paradoxus EPS]
 gi|315594643|gb|ADU35709.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Variovorax paradoxus EPS]
          Length = 1059

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/517 (12%), Positives = 152/517 (29%), Gaps = 33/517 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GL+           L+++P   P              +       
Sbjct: 8   RPIFAWVLSIVVMLAGLMAI-----RTLPLEQYPDIAPPRV---------SINATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L        +       +++L+F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDNLLYMQSTSNSSGVARLSLTFNAGTNIDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   +  T      +++         + A++    I    +D I   +   
Sbjct: 114 AMSRLPQQVQSRGVTVTKGGNDFLLIVSMYSGDGSASAVDVGDYISSNLVDVISRIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +LR+     + +       N        G            
Sbjct: 174 EVQTLGTG-YAMRLWLDPDKLRKYALMPSDVGNAITAQNAQVSAGQLGALPAGAQQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +      +    
Sbjct: 233 TITARSKL-------------QTVSQFENVVLRATPDGAVVRLRDVARVELGAENLTVRS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     E      A L+          V          S   
Sbjct: 280 QLGGRPGAGLGVVLADGANAVQVAEAVKAKVAELQPLFPNQLQTFVSYDTTPFVSASIDE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A    LV++V+++ +   +  L+   ++ + ++ T  +LS+ G ++   ++ G+V
Sbjct: 340 VVKALAEAMLLVVLVMYVFLQNFRATLIPAIAVPVVLLGTFGVLSMAGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +     +     +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEEGLSPKEATRKSMAEITPALVGIALVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG      R F+IT+  ++ +S+F A+++  A+   +
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVFVALTLTPALCATL 496



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   +  Q        L  +     ++V     ++    ++  + P 
Sbjct: 260 VRLRDVARVELGAENLTVRSQLGGRPGAGLGVVLADGANAVQVAEAVKAKVAELQPLFPN 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I + +  +  + + +++ +++  + +   L     + + +  T
Sbjct: 320 QLQTFVSYDTTPFVSASIDEVVKALAEAMLLVVLVMYVFLQNFRATLIPAIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ++ G   N   +  ++  IG  V+D +VV + +     ++   +S ++   KS+ E
Sbjct: 380 FGVLSMAGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMHEEGLSPKEATRKSMAE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V  ++      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 ITPALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVFVALTLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 85/275 (30%), Gaps = 12/275 (4%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                   + +      +  V  +    +     +      G    Q ++G  ++      
Sbjct: 774  YMQGDTAFRMLPADIDRWSVRNSLGQMVPFPAFSSSRWTYGSPQLQRYNGSPSYEFVGDA 833

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
             PG S            K                      +      + ++   + +   
Sbjct: 834  APGVSSGDAMAAVDEVMKQMPAGIGYEWTGASFQERLSGAQAPVLYAISILFVFLCLA-- 891

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +   W      I  + L I   L F +  G+  ++     +LT +G S  + +++ + 
Sbjct: 892  -ALYESWSVPFSVILVVPLGIVGALLFTSFRGLSNDVYFQVGLLTTVGLSSKNAILIVEF 950

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIP 800
             +   +L        +   +++   L   + TS+A    VLP+A+  G+      S    
Sbjct: 951  AK---QLQEQGKGVIEATLEAVRLRLRPILMTSLAFGFGVLPLAIGTGAGAGGRQSIGTA 1007

Query: 801  MAFGIVVAASSSIFIAA---PILLFIYDWRAKNAR 832
            +  G+VV  +  IF       ++    + R K A+
Sbjct: 1008 VLGGMVVGTALGIFFVPLFFALIRGWLEGRRKPAK 1042



 Score = 45.1 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 49/524 (9%), Positives = 126/524 (24%), Gaps = 40/524 (7%)

Query: 13   MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            ++  + +  A+     +      P             L+    + L        +  LQ 
Sbjct: 549  LVVYLLIAAAMAVLFMRLPTSFLPDEDQAF-------LQ--VQVTL---PPGASDARLQP 596

Query: 73   YSDELRSFLKKE-GIGVFSMRQIQN------KITLSFADSRFKENIADKVTLFLQGVNSK 125
               +++ +  K+  +   ++   QN      +  +   D   +E          +  N  
Sbjct: 597  VVTQMQDYFTKQPEVVSVNVITGQNGDQSSARAFVKLKDWAEREGDGQSAAALARRANKD 656

Query: 126  LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
            L    +   +       +  + +    +  +        + + +  DQ    E   +R  
Sbjct: 657  L-STIRDARVFVLLPPAVRGLGANAGFNFHLKDINGLGHDALVKARDQA--IELLSKRSD 713

Query: 186  SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
                +     +  P     +    A  +       +S      G  ++ D   N      
Sbjct: 714  VVVNVRSNNLDDTPQFAVDIDDARAGAASLATADIDSTLSSAMGGTYINDFLDN------ 767

Query: 246  KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
                 G                P     +    +                          
Sbjct: 768  -----GRVKRVYMQGDTAFRMLPADIDRWSVRNSLGQMVPFPAFSSSRWTYGSPQLQRYN 822

Query: 306  PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               +       A    +     A           +  +           +  S +     
Sbjct: 823  GSPSYEFVGDAAPGVSSGDAMAAVDEVMKQMPAGIGYEWTGA----SFQERLSGAQAPVL 878

Query: 366  CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
             AI    V + L  +             + L ++  L   S  G +  +    G++  +G
Sbjct: 879  YAISILFVFLCLAALYESWSVPFSVILVVPLGIVGALLFTSFRGLSNDVYFQVGLLTTVG 938

Query: 426  LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
            L+  + IL+ E  ++   + + V  +           I  +++      + L    G   
Sbjct: 939  LSSKNAILIVEFAKQLQEQGKGVIEATLEAVRLRLRPILMTSLAFGFGVLPLAIGTGAGA 998

Query: 486  ---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
               +     +   +++     I  V      I  + + +     
Sbjct: 999  GGRQSIGTAVLGGMVVGTALGIFFVPLFFALIRGWLEGRRKPAK 1042


>gi|148264705|ref|YP_001231411.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Geobacter
           uraniireducens Rf4]
 gi|146398205|gb|ABQ26838.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Geobacter uraniireducens Rf4]
          Length = 1070

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/574 (12%), Positives = 168/574 (29%), Gaps = 39/574 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+      +    + ++P+  P               + +    
Sbjct: 9   RPIFATVISLIIVIAGLVA-----MKALPVAQYPTITP-------------VQIQVTTTY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
               +  +    +  + + +        +   S    Q  IT+ F+ +   +     V  
Sbjct: 51  PGADSKTVGDSVAAPIEAQINGADNLLYMTSTSSNTGQMTITVFFSLNTNPDIAQVDVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    K+  +    +    +++               +       +D I   
Sbjct: 111 RVNLAMPQLPDAVKQYGVSVQKKSSSPLMIITLFNKDGRYKPEYVTNYTNVYVLDAIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +P R+  L  TT+ +       N        G +      
Sbjct: 171 NGAGQAQIFGVPDQAMRIWMNPDRMASLGITTSDIQTAVANQNALFGAGQVGSQPNDGKV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  +              F   +    + +   +  +                  
Sbjct: 231 QMTFPVVTQA------------PFIKPSEYENIILRASQDSSAIVRVRDVARAETGRRSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +D   L        I   +A  +G    +    + A L+          +          
Sbjct: 279 IDDNRLNGFPATPIIVYQQAGANGLEVSKGVRKVMADLKKTLPEGIEYTISLDTTDFVRL 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +  ++   ++F+++I T A +  +G ++ L ++
Sbjct: 339 SIKEVIQTLFEAIILVILVVYLFLQSFRSTIICTVAVFVSLIGTFAGMLAMGFSINLLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCS---LDMGFSRAYSTIFDSNITALIA 473
            GIVL IG+ VD  I+V E +  +  K   S   +        S +   +     +  I 
Sbjct: 399 FGIVLAIGMVVDDAIVVVENVEAKMVKEHLSPKEATIKAMEQISTSLVAVVLVMASVFIP 458

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   + FAIT+ +S+ +S F A+++  AM  F++++                
Sbjct: 459 AAFLPGTTGQLYKQFAITIVVSVALSGFVALTLTPAMCGFLLKHSTPPQKGPFAWFNRMF 518

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
               +                   +  +     H
Sbjct: 519 DRFTLKFGDAVVLMIKRMPVAFVLLAVMIWALVH 552



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 88/253 (34%), Gaps = 6/253 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            ++  V +  V       +      +        ++  Q    + +  ++ +  V   + 
Sbjct: 258 DSSAIVRVRDVARAETGRRSYIDDNRLNGFPATPIIVYQQAGANGLEVSKGVRKVMADLK 317

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
           + +P        +      R  I++ I  +  + I +++ +++    +   +     + +
Sbjct: 318 KTLPEGIEYTISLDTTDFVRLSIKEVIQTLFEAIILVILVVYLFLQSFRSTIICTVAVFV 377

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   NL  +  ++  IG  V+D +VV + +    K+    +S ++   
Sbjct: 378 SLIGTFAGMLAMGFSINLLTLFGIVLAIGMVVDDAIVVVENV--EAKMVKEHLSPKEATI 435

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++ +     V   +      +P A   G+       FAI +   + ++   ++ +   +
Sbjct: 436 KAMEQISTSLVAVVLVMASVFIPAAFLPGTTGQLYKQFAITIVVSVALSGFVALTLTPAM 495

Query: 820 LLFIYDWRAKNAR 832
             F+        +
Sbjct: 496 CGFLLKHSTPPQK 508



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 66/215 (30%), Gaps = 8/215 (3%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
                  N  +           +   D+           +         S    + +E V
Sbjct: 790 RLYTRSTNGQMVPLSAVVTTTYVSNPDLIPHFNGFPAAQVTGNASAGFSSGEAIKTMEAV 849

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
            +++                 K                 I + + +  +F+ W      +
Sbjct: 850 AREVLPSGYGFDWSGMAYEEKKSGGTSTA----AFAFGLIIVFLLLSAQFESWTLPGSVM 905

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
           T +   I   L F  + G+  ++     +L LIG    + V+   R+   ++L    +S 
Sbjct: 906 TAVPFGILGALTFNWMRGLSNDVYFQIGLLVLIGLGAKNAVL---RVTFAVELREQGLSI 962

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            D   +S  E     + TS+A    VLP+A+  G+
Sbjct: 963 MDATVRSGEERFRPIIMTSLAFIFGVLPLAIATGA 997


>gi|84385222|ref|ZP_00988254.1| putative acriflavin resistence protein [Vibrio splendidus 12B01]
 gi|84379819|gb|EAP96670.1| putative acriflavin resistence protein [Vibrio splendidus 12B01]
          Length = 1050

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/692 (10%), Positives = 187/692 (27%), Gaps = 48/692 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +           +  +P   P               + +   
Sbjct: 8   QRPKFALVISIILTLAGAISLA-----ILPVAEYPKISPP-------------SVSVSAF 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++    D + + +   E +   S +   +    + ++F      +     V 
Sbjct: 50  YTGASAEVVEQAIADPIETSVNGVEDMIYMSSKSANDGSYNLNVTFDVGTDADMAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + SKL  + +   +         +++                  +     DQ+  
Sbjct: 110 NRVAQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPNGEYDDQFLINYVNLNIKDQLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP ++  L  TT+ +       N        G     + 
Sbjct: 170 VSGISEVNVLGGGEYSMRVWLDPEKMANLNLTTSDVYGALAEQNVQVAAGRIGAAPYANP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ +  K  +                 +    +          +      +      
Sbjct: 230 QEVQFNLVTKGRL-------------ETADEFENVVLRANQDGSTVYLKDIARVELGKKF 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       +    S ++  +   + +    +   L                     
Sbjct: 277 YDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSTNFPEGVAYEASYDTTVFVA 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V ++ +   +  L+   +I +++I T A++ + G T+   +
Sbjct: 337 ESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMQMTGFTINTVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNIT---AL 471
           + G++L IG+ VD  ILV E +     K+   S   +  +        I  S +      
Sbjct: 397 LFGLILAIGIVVDDAILVIENVDTTMAKDPTISPRKATLIAMKEVTGPIVTSTLVLLAVF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           I   +L    G   R FA+T+ ++++IS   A+++  A+   +         +  ++ + 
Sbjct: 457 IPVAMLPGITGIMYRQFALTICIAVVISSINALTLSPALCSLVLKQGGGNTARWYQAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
              S              +         +  +  +     T       + KG + + V  
Sbjct: 517 GLESVTNKYGQIAGFLVKKGVLLFTFFVVALAAVTYFAKTTSTAFVPQEDKGILLVNVQL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                LS      E L          DG              +     +   +       
Sbjct: 577 PDAASLSRTEDVTEQLLEMVEQEPGVDGVTLVNGYAFMTGASASNGASLFIKLHDWDMRN 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                  + + +  +I+     +    ++ + 
Sbjct: 637 ALD-GQHSAQAISQRINGRAATELPQAIVFAM 667



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 84/235 (35%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +       +  D + +    + + +        +++   + +  +   ++   P 
Sbjct: 262 VYLKDIARVELGKKFYDGNGKYRGQDASIVTLSLQSDANALESGKAVMAMLDNLSTNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                          E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 322 GVAYEASYDTTVFVAESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N   +  ++  IG  V+D ++V + +         +IS R     ++ E
Sbjct: 382 FAVMQMTGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLIAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V +++      +P+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 441 VTGPIVTSTLVLLAVFIPVAMLPGITGIMYRQFALTICIAVVISSINALTLSPAL 495



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 58/447 (12%), Positives = 120/447 (26%), Gaps = 26/447 (5%)

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            LL      P + G+ L  G A  +    +       + +     +   G   A +     
Sbjct: 592  LLEMVEQEPGVDGVTLVNGYAFMTGASASNGASLFIKLHDWDMRNALDGQHSAQAISQRI 651

Query: 467  NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
            N      +   ++F  G  AV G     G   ++      S   +   M   I    K  
Sbjct: 652  NGRAATELPQAIVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLAMVMNDVIAEANKQP 711

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             I     +    +P                            L +  +N    F    ++
Sbjct: 712  EISHTFSTFRANVPHYYVDIDREKAQQLGIPLSEIFQTLQGNLGSLYVNDFTMFGKNFRV 771

Query: 582  GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + A+              V  S       S  +        D    + +          
Sbjct: 772  TMQADSEHRSSMDDLQRFHVRSSNGEMIPLSTLVTYDQIFEPDVAWRYNMYRSAVIQGQP 831

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
            A           +  +      Q  +     ++ + +  G   +   +   + IY   + 
Sbjct: 832  APGYSSGDAIAAMERVAAEVLPQGYQYEWTGMAYQEVLAGNQAIFAFALALIFIYLFMVA 891

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   +  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 892  QYESWTIPIAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 951

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
              ++      S  D   K           TS +  + + P+    G+      S  I + 
Sbjct: 952  --VEREEKDASIEDAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGISLI 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++    +  F+      F+   R K
Sbjct: 1010 GGLLCVLLAGTFLIPGFYAFVQRKREK 1036


>gi|170077634|ref|YP_001734272.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Synechococcus
           sp. PCC 7002]
 gi|169885303|gb|ACA99016.1| Hydrophobe/Amphiphile Efflux-1 (HAE1) Family protein [Synechococcus
           sp. PCC 7002]
          Length = 1046

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 78/597 (13%), Positives = 168/597 (28%), Gaps = 37/597 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + ++   +I  +GL+       P   + +FP   P          +          
Sbjct: 8   KKPIFALVCGVIILLVGLITI-----PSLPVAQFPQISPT---------QISITASYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++       +      + I  +F  SR ++  A  +   L 
Sbjct: 54  SAEVVEQTVTNILEAELNGIEGLRYLSSTSSNDGLSTIVATFDASRNEDLAAVDIQNRLA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L  + ++N +         ++      +      +  S       +D +   E  
Sbjct: 114 AVTSQLPAEVQRNGVRVAKSSNNIVLGVGLYSEAGEYDDVFLSNYADNYLLDALRKLEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP+RL         +       N        G          Q
Sbjct: 174 GNVQIFGERRYAMRVWLDPNRLAARRLIPQDVVAAIQEQNRLVGAGQLGQSPAPAGQQYQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           + +E +    G               +    +   +   +         +          
Sbjct: 234 FDLEIQGGRLGTV------------SEFEELVLKVDEQGQIIKLRDVGRVELGAESYNTT 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +             +L     P     +          S  
Sbjct: 282 VRYRGNQAVGIGIFQRPGSNALDVANRVIAEMEVLSEQFPPGLDYRIAFNTTDYVAASMR 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+F+ +   +  LV   +I + +I T   + L   ++   ++ G+
Sbjct: 342 EVVITLITAIALVIFVIFLFLQDWRTTLVPTLTIPIALIGTFIFIKLFNFSINSLTLFGL 401

Query: 421 VLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            L  GL VD  I+V E I      +       ++        + I  S +   +   V F
Sbjct: 402 TLATGLVVDDAIVVVEDIARLIHEKGMAPKQAAIAAMQELTGAVIATSLVLMAVFIPVAF 461

Query: 479 FFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPLSR 530
           F G      + FA+T+  SI IS F A+S+  ++   ++R +   +       +     +
Sbjct: 462 FPGTTGALYQQFALTIAFSIAISTFIALSLTPSLAGVLLRDRPEPTSALGKVFNQFNRFQ 521

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +L      I F   R   V +S+   +  I       +      +      +   +
Sbjct: 522 NWLRRRYQKILFQLTRMEYVVVSLFTVLLVITAWLYQIVPGAFVPEEDQGYIITLVQ 578



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 93/255 (36%), Gaps = 7/255 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + + L  V       +  + + +    +   +   Q    +++     +    + ++
Sbjct: 258 EQGQIIKLRDVGRVELGAESYNTTVRYRGNQAVGIGIFQRPGSNALDVANRVIAEMEVLS 317

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
           E  P                  +R+ ++ +I +   ++  I++    W   L    T+ +
Sbjct: 318 EQFPPGLDYRIAFNTTDYVAASMREVVITLITAIALVIFVIFLFLQDWRTTLVPTLTIPI 377

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T  F  LF    N   +  +    G  V+D +VV + +     ++   ++ +    
Sbjct: 378 ALIGTFIFIKLFNFSINSLTLFGLTLATGLVVDDAIVVVEDI--ARLIHEKGMAPKQAAI 435

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++ E  G  + TS+      +P+A + G+       FA+ +AF I ++   ++ +   +
Sbjct: 436 AAMQELTGAVIATSLVLMAVFIPVAFFPGTTGALYQQFALTIAFSIAISTFIALSLTPSL 495

Query: 820 L-LFIYDWRAKNARI 833
             + + D     + +
Sbjct: 496 AGVLLRDRPEPTSAL 510



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 65/160 (40%), Gaps = 8/160 (5%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   +  + + + +  +++ +      + ++ L I   L    L G   ++     +
Sbjct: 873  QAPIIFGLGLVFVFLVLAAQYENFLDPAIILLSVPLAICGALTALVLRGFPNDVYCQVGL 932

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG +  + +++ +       L    +S      ++  E L   + T+++    + P+
Sbjct: 933  VMLIGLASKNAILIVEFAN---HLRGEGLSITKAAIEAARERLRPILMTAISTLSGIFPL 989

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +    G +   S    +  G++VA   S+F+  PIL  +
Sbjct: 990  TLATGAGAASRQSLGTTVFGGMLVATLLSLFVV-PILYIL 1028


>gi|53804522|ref|YP_113821.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Methylococcus
           capsulatus str. Bath]
 gi|53758283|gb|AAU92574.1| hydrophobe/amphiphile Efflux-1 (HAE1) family protein [Methylococcus
           capsulatus str. Bath]
          Length = 1054

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/588 (11%), Positives = 161/588 (27%), Gaps = 28/588 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +   +G +  +        + ++P  +P               + +    
Sbjct: 9   RPIFANVIAIVTIILGAVSLI-----NLPVAQYPDIVPPT-------------IQVTTRY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                  +       +   +      ++      +     +T++F            V  
Sbjct: 51  PGASAEIIANTVGIPIEQAVNGVENSLYLSSTSGSDGSYTLTVTFRVGSDLNTGLALVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + G  ++L    +K  +         + +     D         S   +      +   
Sbjct: 111 MVNGALAQLPDAVQKQGVTVKKVSTDMLQVISLYSDDDRFDETYLSNYAVINLQYPLARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +P RLR    T   ++      N        G   + +  
Sbjct: 171 HGVGQIKVVGAGSYSMRVWLNPERLRYYGLTAKDVADAIQQQNVEVVAGQLGGPPVPEDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ +     +S +           +          +E  AR         +       
Sbjct: 231 PYQFTINALGRLSDVSEFENIIIKTSRGKPQQSV--TNEDAARIVRVKDLARVELSQQTY 288

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +      Q +       +     E        +           +          
Sbjct: 289 TNYAEVNGHKSTQIVVYTLPGANAIDVGERIKQSMEEMSQDFPQGLKYAIFYDTTKFIDQ 348

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+ + +   +  LV   ++ + +I   A +++LG ++ L ++
Sbjct: 349 SIHAVYETLFEAGVLVLIVIMVFLQNWRATLVPATTVPVTIIGAFAAMAMLGFSVNLMTL 408

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I++ E       K  +   + +          I  + +   +    
Sbjct: 409 FALILAIGIVVDDAIMIVENAWHYIEKGLTPKEASIKAMSEMTGPVIGITLVLTAVFLPS 468

Query: 477 LFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F  G  G   R FA+ +  + +IS   A+++  A     ++ +            F  +
Sbjct: 469 AFLPGITGQMFRQFALVIASTAIISAINALTLKPAQCALYLKARPADHRPNAFYRGFNEV 528

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              I   + R   W V  +   ++     +   G  + I   G +   
Sbjct: 529 YAAIEAAYTRVVRWMVKRAGTMAVVFFAFIAMGGWLFSIHPTGFLPSE 576



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 76/199 (38%), Gaps = 7/199 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
             + ++I +      +           ++L  +     ++S + + + +  +++ + +  A
Sbjct: 849  QLMERIAKNTLPQGMSFEWTATAFQEKQLGNQAYYIYLLSIVLVFLVLAAQYESWASPAA 908

Query: 697  ITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  ++ + +   +    +   + NL     ++ +I  +  + ++V +  R+   L T  +
Sbjct: 909  VILVVPMALVGVIVALIIRHFDNNLYTQVGLVLMIALASKNAILVVEFARE---LRTEGM 965

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSS 812
            +  D   ++        + TS A  + V+P+   GG   +   +    +  G++ +   +
Sbjct: 966  AIADAAVEATRRRFRPIIMTSFAFILGVVPLMKAGGAGAASQQAIGTVVFGGMLASTILA 1025

Query: 813  IFIAAPILLFIYDWRAKNA 831
            I       +    W  +N 
Sbjct: 1026 IPFVPVFYVITQRWSERNK 1044



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/189 (15%), Positives = 77/189 (40%), Gaps = 11/189 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + +E + +   + +  +   +T     +    +        ++  I +++++    
Sbjct: 317 ERIKQSMEEMSQDFPQGLKYAIFYDTTKFIDQSIHAVYETLFEAGVLVLIVIMVFLQ--- 373

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       A+ G   NL  + A++  IG  V+D +++     +N 
Sbjct: 374 NWRATLVPATTVPVTIIGAFAAMAMLGFSVNLMTLFALILAIGIVVDDAIMIV----ENA 429

Query: 749 KLY-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
             Y    ++ ++   K+++E  G  +  ++      LP A      G +   FA+ +A  
Sbjct: 430 WHYIEKGLTPKEASIKAMSEMTGPVIGITLVLTAVFLPSAFLPGITGQMFRQFALVIAST 489

Query: 805 IVVAASSSI 813
            +++A +++
Sbjct: 490 AIISAINAL 498


>gi|28897866|ref|NP_797471.1| acridine efflux pump [Vibrio parahaemolyticus RIMD 2210633]
 gi|260361796|ref|ZP_05774821.1| RND transporter, HAE1 family [Vibrio parahaemolyticus K5030]
 gi|260877025|ref|ZP_05889380.1| AcrB protein [Vibrio parahaemolyticus AN-5034]
 gi|260895113|ref|ZP_05903609.1| AcrB protein [Vibrio parahaemolyticus Peru-466]
 gi|28806079|dbj|BAC59355.1| acridine efflux pump [Vibrio parahaemolyticus RIMD 2210633]
 gi|308089214|gb|EFO38909.1| AcrB protein [Vibrio parahaemolyticus Peru-466]
 gi|308093929|gb|EFO43624.1| AcrB protein [Vibrio parahaemolyticus AN-5034]
 gi|308113258|gb|EFO50798.1| RND transporter, HAE1 family [Vibrio parahaemolyticus K5030]
 gi|328473173|gb|EGF44021.1| acridine efflux pump [Vibrio parahaemolyticus 10329]
          Length = 1053

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/690 (10%), Positives = 181/690 (26%), Gaps = 46/690 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G++           + ++P+  P             + + +    
Sbjct: 8   RPVFAWVLAILTMLAGIMSLF-----NLPVSQYPTISP-------------TTITISARY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGASAKTVEDSVTQVIEQNMTGLDYLRYLSSSSDAFGNATITLTFDSEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L ++ +   +V        +++     D       + +  ++    D I   
Sbjct: 110 KLQLALTSLPMEVQSQGIVVNKSNTSFLMVVAVYSDDPDFTQNDIADFVVTNIQDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP +L Q   T   ++      N        G    +   
Sbjct: 170 TGVGQVQAFGSQ-YAMRVWLDPFKLTQFNLTAIDVANAISEQNAQVSSGQLGAAPAQKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S +              +    I   +      +      I +     
Sbjct: 229 LLNATISSASRLSSVA-------------EFQNIILKSDASGANVYLRDVARIERGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    S     +   T        A L                      
Sbjct: 276 DIQGQYNGLPASGLGISLGTGANALETAAAVKERLAELSENFPDGLKVAYPFETTPFVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  ++   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIQEVVKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLGTFAILYATGFSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +        +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEDGLDPKEATKKSMGQITGALIGVGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPL 528
           + F  G      R F+IT+  ++ +S+  AI +  A+   +++         K       
Sbjct: 456 MAFMSGSTGVIYRQFSITIVAAMTLSVMVAIILTPALCATLLKKGDAEFTDKKGFFGWFN 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +F  +         +       + ++F   S    +              Q  V +   
Sbjct: 516 RKFDSMTAGYEAGVAKLLKRTGRMLLVFVAMSAGAGWLFMNLPTSFLPDEDQGTVFSMAI 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +  +  +   E       S+   + + N              Q + + M    + +    
Sbjct: 576 LPPNSTQEQTEKTLDKVRSYFLEEEKDNVRSVFTVAGFSFAGQGQNMGMAFIGLKDWSER 635

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAI 678
               +        +          ++ +  
Sbjct: 636 EAPGSDAASLTGRAMGYFSTIKEAMVFAFA 665



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +  DI  Q      + L        +++     ++    +++E  P
Sbjct: 259 NVYLRDVARIERGAESYDIQGQYNGLPASGLGISLGTGANALETAAAVKERLAELSENFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                             I++ +  ++ + + + + +++  + +   +     + + +  
Sbjct: 319 DGLKVAYPFETTPFVEASIQEVVKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T       G   N   + A++  IG  V+D +VV + +     ++   +  ++   KS+ 
Sbjct: 379 TFAILYATGFSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEDGLDPKEATKKSMG 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  +   +      +PMA   GS       F+I +   + ++   +I +   +   +
Sbjct: 437 QITGALIGVGLTLSAVFVPMAFMSGSTGVIYRQFSITIVAAMTLSVMVAIILTPALCATL 496

Query: 824 YDW 826
              
Sbjct: 497 LKK 499



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 75/244 (30%), Gaps = 9/244 (3%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 +      +       V  S   S   +     +   N     N            
Sbjct: 776  FRMQPEDFNSWYVRNAQGEMVPFSAFASGEWTYGSPQLQRFNGLAAMNIQGGAAPGVSTG 835

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   +  MV++            + E         ++   +  +++  +   +Y     
Sbjct: 836  EAMAEIEAMVEQLPEGFTVNWNGISYEERLSGNQAPMLY-ALSILVVFLVLAALYESWSV 894

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L     ++  +   LG     G++ ++    ++LT +G +  + +++ +  ++  
Sbjct: 895  PLAVVLVVPLGVLGAVLAVLG----RGMDNDVFFQVSLLTTVGLATKNAILIVEFAKEY- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
              Y       +    ++   L   + TS+A  + V+P+A+  G         +  G++  
Sbjct: 950  --YEKGAGLIEATLHAVRVRLRPIIMTSLAFGLGVVPLAISAGVGSAGQN-AVGTGVLGG 1006

Query: 809  ASSS 812
              S+
Sbjct: 1007 MISA 1010


>gi|260556470|ref|ZP_05828688.1| multidrug resistance protein mexB [Acinetobacter baumannii ATCC
           19606]
 gi|260409729|gb|EEX03029.1| multidrug resistance protein mexB [Acinetobacter baumannii ATCC
           19606]
          Length = 1031

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/691 (10%), Positives = 206/691 (29%), Gaps = 46/691 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   +        ++R+P   P               + +  +
Sbjct: 8   QRPIFANVLAIIVMAFGIFSVM-----NLPVERYPDIAPPK-------------ITVSAN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSSSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVIGLYDSTGKTGNIELSDYLTTHVVDNLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGETDVFGSQ-YAMRIWLNPDKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKSNKTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLVEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     +   S   +           +    +      +
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG      R F+IT+  ++ +S+  A+ +  A+   I++            ++  
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLIVALILTPALCALILKPNPQPQRWAVWFNQKI 515

Query: 533 LIPDCIAIQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                  I+        ++   V    L ++ ++            + +G + + +    
Sbjct: 516 EQLKNQYIKLVQTSIHYSKSVIVIFVALIAVFTLFYNGLKSGFIPKEDQGILSVQIKLVD 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +S  +   E ++   ++ ++ + +   +   +   G      +    +K        
Sbjct: 576 SAPISQSQKIGEQVRQYFLTQEDKNVDLVLIRYGRNYSGTGQNLAQGFIALKPWDVRTGK 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            ++ +  +    K         I   + +++
Sbjct: 636 ENSAEAIQKRAMKYFSHFNNAQINVTLPASV 666



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 8/212 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   +S ++   +S+ E  G  V  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   + ++   ++ +   +   I     +  R
Sbjct: 475 LVAAMALSLIVALILTPALCALILKPNPQPQR 506



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 77/246 (31%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 787  NDQNEMVPFSSFATFSWGGAPEIVKRYMGYSALQLQADVASGSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             I           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DIGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             +      +  +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKNAIQAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFKSKA 1029


>gi|239503406|ref|ZP_04662716.1| Multidrug resistance protein mexB (Multidrug-efflux transporter
           mexB) [Acinetobacter baumannii AB900]
          Length = 1031

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/691 (10%), Positives = 206/691 (29%), Gaps = 46/691 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   +        ++R+P   P               + +  +
Sbjct: 8   QRPIFANVLAIIVMAFGIFSVM-----NLPVERYPDIAPPK-------------ITVSAN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSSSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVIGLYDSTGKTGNIELSDYLTTHVVDNLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGETDVFGSQ-YAMRIWLNPDKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKSNKTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLVEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     +   S   +           +    +      +
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG      R F+IT+  ++ +S+  A+ +  A+   I++            ++  
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLIVALILTPALCALILKPNPQPQRWAVWFNQKI 515

Query: 533 LIPDCIAIQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                  I+        ++   V    L ++ ++            + +G + + +    
Sbjct: 516 EQLKNQYIKLVQTSIHYSKSVIVIFVALIAVFTLFYNGLKSGFIPKEDQGILSVQIKLVD 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +S  +   E ++   ++ ++ + +   +   +   G      +    +K        
Sbjct: 576 SAPISQSQKIGEQVRQYFLTQEDKNVDLVLIRYGRNYSGTGQNLAQGFIALKPWDVRTGK 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            ++ +  +    K         I   + +++
Sbjct: 636 ENSAEAIQKRAMKYFSHFNNAQINVTLPASV 666



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 8/212 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   +S ++   +S+ E  G  V  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   + ++   ++ +   +   I     +  R
Sbjct: 475 LVAAMALSLIVALILTPALCALILKPNPQPQR 506



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 77/246 (31%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 787  NDQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVASGSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             I           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DIGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             +      +  +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKNAIQAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFKSKA 1029


>gi|18310923|ref|NP_562857.1| preprotein translocase subunit SecF [Clostridium perfringens str.
           13]
 gi|18145605|dbj|BAB81647.1| protein-export membrane protein [Clostridium perfringens str. 13]
          Length = 289

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/289 (28%), Positives = 146/289 (50%), Gaps = 8/289 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            +     ISIL  +     +FT G+N+GIDF+GG Q+ +      + + V   ++     
Sbjct: 7   KKKIWFTISILIIVIGFGFMFTKGMNFGIDFRGGTQVVINMGTDFNKTDVDKIVDEYSKD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++ Q    E     +       +     + E    K   +       +   +G  + R+
Sbjct: 67  AVTNQVNGTELQIKAKELNSSQVNDIFKALKEKYDLKDDAL------VSQNEIGASVGRD 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L    IV + I+ I MLIY+ IRF++ F + AI  L+ D+  T+  +A+FGI  N   +A
Sbjct: 121 LTTNAIVALAIAVIGMLIYVIIRFEFSFGIAAIIALLHDVLITISVYAVFGITINTPFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +V++DR+R+N +      S  ++ D SI +T+ RS+ T++   I+++
Sbjct: 181 AILTIVGYSINDTIVIFDRIREN-RKKLRGKSVEEIADISITQTMSRSINTTLTTLITIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            + ++    +  FA P+  GI   A SSIFIA+PI   + + +     I
Sbjct: 240 CVYIF-VPTVRDFAFPLIVGIASGACSSIFIASPIWCILANRQKNKKAI 287


>gi|300916761|ref|ZP_07133472.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           115-1]
 gi|300415983|gb|EFJ99293.1| inner membrane multidrug efflux protein BpeB [Escherichia coli MS
           115-1]
          Length = 1037

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQVADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|255659803|ref|ZP_05405212.1| multidrug efflux RND transporter MexF [Mitsuokella multacida DSM
           20544]
 gi|260847874|gb|EEX67881.1| multidrug efflux RND transporter MexF [Mitsuokella multacida DSM
           20544]
          Length = 1063

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 80/681 (11%), Positives = 182/681 (26%), Gaps = 36/681 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   G + A      Q  + ++P   P                      
Sbjct: 8   RPIFAIVISLIIVIAGSIAA-----TQLPIAQYPQISPPTV---------SVSTSYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              VN  +    ++  +  +       +        ++++F      +  + KV   +  
Sbjct: 54  AAVVNQTVAQIVEDQVNGTQGMDYMSSTSDDTGRYSLSVTFEVGTDGDMDSVKVQNNVAS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T         +                       +D++       
Sbjct: 114 ATSQLPSEVQQVGVTTKKSTNDMAYMMSFYSPDGTYDRAFMKNYATIYLLDKLKRINGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P +L +L  T A +S      N        G   + +    Q 
Sbjct: 174 DVQVFGS-DYAMRVWLNPDKLAELGLTVADVSAAIKEQNVQAPAGTVGAMPVNNGQEKQM 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + +  ++                +    I       +         I           
Sbjct: 233 SGKIEGRLT-------------TPEEFGNVIIKSNGDGQFVRLKDVAKIETGSQSEAIIS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   TI     +    +    P         +      S   
Sbjct: 280 KFNGYPAVGFGIKLTSDANAMKTISEVRKVFDEAKETLPPGMQMSTIFDSTSYISASIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+ V+F+ +   +  ++   ++ +++I TL    +L  T+   ++  +V
Sbjct: 340 VLMTFLEALLLVVFVIFIFLQNWRATIIPLLAVPVSLIGTLGAFIVLDFTINTLTLFAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E + +   +  +   + +         +    I      V + F G
Sbjct: 400 LAIGLVVDDAIVVIENVEKHMEEGLTPIDATERAMDEVQGPVVAIAIVLSAVFVPVAFLG 459

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FA+T+ +S+ +S F A+++  A+   +++    K                 
Sbjct: 460 GMTGVLYRQFALTIAVSVCLSAFVALTLTPALCAMMLKKHTEKD----DEGVLGRFFVKF 515

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              F R +   VGI   F   S   +    +  G        L        D   + + +
Sbjct: 516 NEWFERMKRGYVGIVAKFIRHSRLAIIFLLIVSGCAGIIYKNLPSTFVPNEDQGYMFAAV 575

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           E       +      +K  +  ++   G                +       +   +   
Sbjct: 576 EMPDGTSANRTQAVIDKLNVAMMENVKGLQSTMAITGFSPLSGGSSSSAGMIVVGMKDWS 635

Query: 659 PKISRELIRKGIVGVIISAIA 679
            +          V       A
Sbjct: 636 QREDAASSVDAAVRTAFGIGA 656



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 93/244 (38%), Gaps = 7/244 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V L  V       Q   I  +                 +++     +  V  +  E +
Sbjct: 258 QFVRLKDVAKIETGSQSEAIISKFNGYPAVGFGIKLTSDANAMKTISEVRKVFDEAKETL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +T           I + ++  + + + ++  I+I  + W   +  +  + + + 
Sbjct: 318 PPGMQMSTIFDSTSYISASIEEVLMTFLEALLLVVFVIFIFLQNWRATIIPLLAVPVSLI 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            TLG F +     N   + A++  IG  V+D +VV + +    K     ++  D  ++++
Sbjct: 378 GTLGAFIVLDFTINTLTLFAMVLAIGLVVDDAIVVIENV---EKHMEEGLTPIDATERAM 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +E  G  V  ++      +P+A  GG   V+   FA+ +A  + ++A  ++ +   +   
Sbjct: 435 DEVQGPVVAIAIVLSAVFVPVAFLGGMTGVLYRQFALTIAVSVCLSAFVALTLTPALCAM 494

Query: 823 IYDW 826
           +   
Sbjct: 495 MLKK 498


>gi|153839243|ref|ZP_01991910.1| AcrB protein [Vibrio parahaemolyticus AQ3810]
 gi|149747238|gb|EDM58226.1| AcrB protein [Vibrio parahaemolyticus AQ3810]
          Length = 1053

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 73/690 (10%), Positives = 181/690 (26%), Gaps = 46/690 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G++           + ++P+  P             + + +    
Sbjct: 8   RPVFAWVLAILTMLAGIMSLF-----NLPVSQYPTISP-------------TTITISARY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGASAKTVEDSVTQVIEQNMTGLDYLRYLSSSSDAFGNATITLTFDSEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L ++ +   +V        +++     D       + +  ++    D I   
Sbjct: 110 KLQLALTSLPMEVQSQGIVVNKSNTSFLMVVAVYSDDPDFTQNDIADFVVTNIQDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP +L Q   T   ++      N        G    +   
Sbjct: 170 TGVGQVQAFGSQ-YAMRVWLDPFKLTQFNLTAIDVANAISEQNAQVSSGQLGAAPAQKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S +              +    I   +      +      I +     
Sbjct: 229 LLNATISSASRLSSVA-------------EFQNIILKSDASGANVYLRDVARIERGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    S     +   T        A L                      
Sbjct: 276 DIQGQYNGLPASGLGISLGTGANALETAAAVKERLAELSENFPDGLKVAYPFETTPFVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  ++   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIQEVVKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLGTFAILYATGFSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +        +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEDGLDPKEATKKSMGQITGALIGVGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPL 528
           + F  G      R F+IT+  ++ +S+  AI +  A+   +++         K       
Sbjct: 456 MAFMSGSTGVIYRQFSITIVAAMTLSVMVAIILTPALCATLLKKGDAEFTDKKGFFGWFN 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +F  +         +       + ++F   S    +              Q  V +   
Sbjct: 516 RKFDSMTAGYEAGVAKLLKRTGRMLLVFVAMSAGAGWLFMNLPTSFLPDEDQGTVFSMAI 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +  +  +   E       S+   + + N              Q + + M    + +    
Sbjct: 576 LPPNSTQEQTEKTLDKVRSYFLEEEKDNVRSVFTVAGFSFAGQGQNMGMAFIGLKDWSER 635

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAI 678
               +        +          ++ +  
Sbjct: 636 EAPGSDAASLTGRAMGYFSTIKEAMVFAFA 665



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +  DI  Q      + L        +++     ++    +++E  P
Sbjct: 259 NVYLRDVARIERGAESYDIQGQYNGLPASGLGISLGTGANALETAAAVKERLAELSENFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                             I++ +  ++ + + + + +++  + +   +     + + +  
Sbjct: 319 DGLKVAYPFETTPFVEASIQEVVKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T       G   N   + A++  IG  V+D +VV + +     ++   +  ++   KS+ 
Sbjct: 379 TFAILYATGFSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEDGLDPKEATKKSMG 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  +   +      +PMA   GS       F+I +   + ++   +I +   +   +
Sbjct: 437 QITGALIGVGLTLSAVFVPMAFMSGSTGVIYRQFSITIVAAMTLSVMVAIILTPALCATL 496

Query: 824 YDW 826
              
Sbjct: 497 LKK 499



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 75/244 (30%), Gaps = 9/244 (3%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 +      +       V  S   S   +     +   N     N            
Sbjct: 776  FRMQPEDFNSWYVRNAQGEMVPFSAFASGEWTYGSPQLQRFNGLAAMNIQGGAAPGVSTG 835

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   +  MV++            + E         ++   +  +++  +   +Y     
Sbjct: 836  EAMAEIEAMVEQLPEGFTVNWNGISYEERLSGNQAPMLY-ALSILVVFLVLAALYESWSV 894

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L     ++  +   LG     G++ ++    ++LT +G +  + +++ +  ++  
Sbjct: 895  PLAVVLVVPLGVLGAVLAVLG----RGMDNDVFFQVSLLTTVGLATKNAILIVEFAKEY- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
              Y       +    ++   L   + TS+A  + V+P+A+  G         +  G++  
Sbjct: 950  --YEKGAGLIEATLHAVRVRLRPIIMTSLAFGLGVVPLAISAGVGSAGQN-AVGTGVLGG 1006

Query: 809  ASSS 812
              S+
Sbjct: 1007 MISA 1010


>gi|302517987|ref|ZP_07270329.1| protein-export membrane protein SecF [Streptomyces sp. SPB78]
 gi|318057098|ref|ZP_07975821.1| preprotein translocase subunit SecF [Streptomyces sp. SA3_actG]
 gi|333028335|ref|ZP_08456399.1| putative preprotein translocase subunit SecF [Streptomyces sp.
           Tu6071]
 gi|302426882|gb|EFK98697.1| protein-export membrane protein SecF [Streptomyces sp. SPB78]
 gi|332748187|gb|EGJ78628.1| putative preprotein translocase subunit SecF [Streptomyces sp.
           Tu6071]
          Length = 367

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/309 (26%), Positives = 144/309 (46%), Gaps = 14/309 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L+   I   F+  R    GISIL +I +I  L   GL+ GI+F+GG             
Sbjct: 10  RLVRGEIGYDFIGKRKIWYGISILITITAIVGLSVRGLHMGIEFEGGAVFTTPKTSVSAA 69

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +  +S  ++     I  +  +G     +           + ++ + +  K  +I      
Sbjct: 70  AAEQSAEDASGHDAIVQELGNGGMRVQISGIDTGKSDEIRDKLAQDLDVKAEDINAD--- 126

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
               +VGP    ++  K   G+ I  + ++IY+ I F+W  A+ A+  LI DIT T+G +
Sbjct: 127 ----LVGPSWGEQVANKAWTGLGIFMVLVVIYLAIAFEWRMAVAALVALIHDITITVGVY 182

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           AL G E     V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ + SIN TL
Sbjct: 183 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQSKGITKQTRHTYAEVANLSINGTL 242

Query: 770 GRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ T++ A + V  +   GG      ++   ++ +  G+   A SSIFIA P++  + 
Sbjct: 243 VRSINTTVVALLPVAGLLFIGGGFLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVSDLK 302

Query: 825 DWRAKNARI 833
               +   +
Sbjct: 303 SREPQMKAL 311


>gi|153211873|ref|ZP_01947720.1| protein-export membrane protein SecD [Vibrio cholerae 1587]
 gi|124116949|gb|EAY35769.1| protein-export membrane protein SecD [Vibrio cholerae 1587]
          Length = 612

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 150/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRA 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   +++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVAVQAMGND---AFEVKTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|289549049|ref|YP_003474037.1| protein-export membrane protein SecF [Thermocrinis albus DSM 14484]
 gi|289182666|gb|ADC89910.1| protein-export membrane protein SecF [Thermocrinis albus DSM 14484]
          Length = 293

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 11/302 (3%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L      + FM  R++   +S+L  + S+  L   GLN G+DF GG  L V      
Sbjct: 1   MIILFKAMRQLDFMGVRYYAYAVSLLLLVISLLSLGLKGLNLGLDFTGGTLLEVRYTPKQ 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             + +R  LE   +     Q+       +     +P D V +            + +   
Sbjct: 61  STADIRKVLERSGVSAFQVQDTAQGTILVRLKVDEPRDKVLRA----------LKTLGDY 110

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            +   E +G  IS EL +K +  ++ +   +L+Y+  RF+  +ALGA+  L  D+   +G
Sbjct: 111 QLLRMESIGGVISGELRQKALWAILTAIGGILLYLAYRFEPVWALGAVLALAHDVFLVVG 170

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            ++L G E NL  VAA+L + GYS++D VVV+DR+R+NM+        + +I+ SIN+TL
Sbjct: 171 AYSLTGREVNLDVVAALLVVAGYSISDTVVVFDRIRENMR-IRKGTDLKTVINISINQTL 229

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R+V TS+  F+  L M + GG V+ +       GIVV   SSIF+A+ ++L I +   +
Sbjct: 230 SRTVMTSLTTFVVSLTMFLLGGPVLSNIMFSFVVGIVVGTLSSIFVASALVLDIKERLVR 289

Query: 830 NA 831
             
Sbjct: 290 PK 291


>gi|77362236|ref|YP_341810.1| RND family multidrug efflux protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76877147|emb|CAI89364.1| putative multidrug efflux pump (RND family) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 1043

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 67/690 (9%), Positives = 174/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++PS  P               + +  + 
Sbjct: 8   KPIFAWVLAIIVMLAGILAV-----KSLPIAQYPSIAPPA-------------ISITANY 49

Query: 63  DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L+       ++    L        +     +  +TL+F      +    +V  
Sbjct: 50  PGASAQTLEDSVTQVIEQKMKGLDGLLYMSSTSESNGSATLTLTFNADTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +V        +++            I+    +     D +   
Sbjct: 110 KLATATPLLPEEVQRQGVVVAKAARNFLLVLAFVSKDGSMTNIDIGDYVASNVQDIVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L+    T   +       N        G        
Sbjct: 170 DGVGEAQLFGSQ-YAMRIWLDPAKLQNFKLTPNDIGAAITAQNAQVSAGQLGGMPAIAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +                 +       
Sbjct: 229 QLNATITAQSRL-------------QTPEQFENILVKTNSDGSVVRLKDVARVELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +   T E        L+          +          
Sbjct: 276 GVVARYNGDPAAGIGIKLASGANALDTAEGVKKALEDLKPFFPEGLDVAIPYDTTPFVSL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIEKVVHTLIEAVILVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILYTFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERLMTEEKLSALDATRKSMDEIKGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FF G      R F+IT+  ++ +S+  A+ +  A+   +              +    
Sbjct: 456 MAFFSGSTGVIYRQFSITIVSAMGLSVLVALILTPALCATLLKPSHVHDKTSFIGRFFSG 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +             +     +++ + +   +L                  + +G +   
Sbjct: 516 FNRGFDKTNRGAQGIVGRMISQSKRYLLIYGVLVGGMVYVFSSLPTAFLPDEDQGILFNQ 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+      +      +E ++   ++ Q       F V      G           +K   
Sbjct: 576 VMLPAGSTIEQTLGVVEKVENHYLNDQAEAVGSIFTVTGFSFAGSGQNSAIGFVNLKHWD 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                  ++      G      +    +  
Sbjct: 636 ERQRDDLSVNAVAGKGMGYFSTIKEAFVFA 665



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 83/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   +  +        +        +++     ++   + +    P 
Sbjct: 260 VRLKDVARVELGGENYGVVARYNGDPAAGIGIKLASGANALDTAEGVKKALEDLKPFFPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I K +  +I + I + + +++  + +   L     + + +  T
Sbjct: 320 GLDVAIPYDTTPFVSLSIEKVVHTLIEAVILVFVVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    +S  D   KS++E
Sbjct: 380 FAILYTFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERLMTEEKLSALDATRKSMDE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA + GS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IKGALVGIAMVLSAVFIPMAFFSGSTGVIYRQFSITIVSAMGLSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 81/262 (30%), Gaps = 16/262 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +       V  +   S+  S     +   N                   
Sbjct: 779  RMVPEDLNKWYVRNNNGDMVPFAAFASSHWSYGSPRLERYNGFSAMEIQGSAAPGYSTGQ 838

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +VK+    I    +  + +         L+        +S + + + +   ++
Sbjct: 839  AMDEMERLVKQLPNGIASEWSGISYQERSSGGQAPLLY------GLSLLFVFLCLAALYE 892

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L I   +    +  +  ++     +LT IG +  + +++ +     +
Sbjct: 893  SWSVPFAVMIIVPLGIFGAIMAALIGNLSNDIYLQVGLLTTIGLASKNAILIVEFA---I 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +S  D    ++   L   + TS+A    V+P+A+    G     +  I +  G 
Sbjct: 950  HKMEEGLSLVDAAIAAVKLRLRPVLMTSLAFICGVVPLAIASSAGSGAQNALGISIIGGT 1009

Query: 806  V-VAASSSIFIAAPILLFIYDW 826
            +  +    +F+  P+   +   
Sbjct: 1010 LAASTLVVLFV--PLFFVLVRK 1029


>gi|226941843|ref|YP_002796917.1| AcrD [Laribacter hongkongensis HLHK9]
 gi|226716770|gb|ACO75908.1| AcrD [Laribacter hongkongensis HLHK9]
          Length = 1052

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 65/574 (11%), Positives = 159/574 (27%), Gaps = 40/574 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL       +    ++++P  +P               + +   
Sbjct: 8   RRPIFASVISILITLAGLAA-----MRVLPIEQYPQIVPP-------------QVTVTAV 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       L   +        +   S       +T++FA     +     V 
Sbjct: 50  YPGASADVIAKTVAAPLEQQINGVDNMLYMQSSSDSSGSMVLTVTFAIGTDPDQNTINVN 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   ++L  + ++  +    +    + ++  +        +  S  ++   +D++  
Sbjct: 110 NRVQAATAQLPQEVRQQGVTVQKKSANILQIATFSSPGGEYSELFISNYVLLNVLDELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +       +L QL  T   +       N+       G   +++ 
Sbjct: 170 IPGVGDASIFGSKNYSMRIWLRQDKLVQLGLTPTDVVSAIKDQNSQFAAGKVGAEPIQNP 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y V  +  +S                +    I          +      +      
Sbjct: 230 VDFTYTVTTQGRLS-------------DPAQFENIIIRANPDGSAIYLKDVARVDLGAQD 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +     E      A +           +         
Sbjct: 277 YNFAGTLNGKPTIPVGIYLAPGANQLQVAEDVTKALAQMSQRFPTGLAYSIPYDTTSFVK 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    + T      LV +V+++ +   +  L+   ++ +++I T A +  LG ++   +
Sbjct: 337 ISIEEVQKTLFEAMVLVFLVVYLFLQNWRATLIPCLAVPVSIIGTFAGMYALGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +       +     +           +    +      V
Sbjct: 397 LFGMVLAIGIVVDDAIVVLENVERIMSTEKLGPVDASIKAMQEVSGPVVAIVLVLCAVFV 456

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F G   G   + FAIT+ +S+++S   A+++  A+   +++               F
Sbjct: 457 PVAFMGGLAGQMYKQFAITIAVSVVLSGIVALTLTPALCALLLKEGHSHPNRFFVWFNNF 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
                         F       L     +  +  
Sbjct: 517 FDRMTARYTAGVRFFLKRTGVGLLVFAGLIAITV 550



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 79/237 (33%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  + +          +        + +     +     ++++  P     
Sbjct: 266 DVARVDLGAQDYNFAGTLNGKPTIPVGIYLAPGANQLQVAEDVTKALAQMSQRFPTGLAY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +         +  I +    +  + + + + +++  + W   L     + + I  T    
Sbjct: 326 SIPYDTTSFVKISIEEVQKTLFEAMVLVFLVVYLFLQNWRATLIPCLAVPVSIIGTFAGM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N   +  ++  IG  V+D +VV + +     + T  +   D   K++ E  G 
Sbjct: 386 YALGFSINTLTLFGMVLAIGIVVDDAIVVLENV--ERIMSTEKLGPVDASIKAMQEVSGP 443

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V   +      +P+A  G   G +   FAI +A  +V++   ++ +   +   +  
Sbjct: 444 VVAIVLVLCAVFVPVAFMGGLAGQMYKQFAITIAVSVVLSGIVALTLTPALCALLLK 500



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I + I + + +  ++ +W   L  +  +   +   +       +  ++    A++TLIG 
Sbjct: 875  IFALIVVFLILAAQYERWKLPLAVLMAVPFALFGAILATWARDLSNDVYFQVALVTLIGL 934

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +     +      +       ++ +      + TS+A  +  +P+ +    
Sbjct: 935  AAKNAILIVEFA---ILKLDEGVDLIPAAIEAAHLRFRPILMTSLAFVLGCVPLVLSSGA 991

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G +   S    +  G++ A   + F+     + I  
Sbjct: 992  GAASRHSLGTGIIGGMLGATFIATFLIPLFFVLIMR 1027


>gi|73666691|ref|YP_302707.1| preprotein translocase subunit SecF [Ehrlichia canis str. Jake]
 gi|72393832|gb|AAZ68109.1| protein translocase subunit secF [Ehrlichia canis str. Jake]
          Length = 293

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 99/289 (34%), Positives = 159/289 (55%), Gaps = 3/289 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            +  +   I F + R   +  S +  + SI L+   G+ +G DF GGI + + A++ +D 
Sbjct: 1   MIFRNGTNINFSKYRMCAMFCSGVLMLISILLVLFKGVCFGTDFAGGIVIELRASQ-IDT 59

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             V   L+       S Q+F    +  + ++++ G  V  T  +E +K  + EI+   T 
Sbjct: 60  KNVTLKLQEKGFVGFSVQSFR-NNDKELMIRFKSGKDVNHTDTIEKIKLALGEILGEVTY 118

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP++  + I +G+  +I S + M +Y+W+RF+W FALG +  LI D+  TLG  
Sbjct: 119 LKIDYVGPQVGYKQIFEGLCAIIFSLLGMFLYLWVRFQWRFALGGVLALIHDVILTLGLI 178

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L  IEFNL++ AA+LT+IGYSVND VV+YDR+R+ +          D+I+ SIN TL R
Sbjct: 179 SLCNIEFNLSSTAAILTVIGYSVNDSVVIYDRIRE-LLRKKLQKKLSDIINVSINATLSR 237

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ TS    ++ LP+ +     +   +I + FGI V   SSIFIA   L
Sbjct: 238 TILTSGTTMLASLPLILLCQGTVRELSIIVFFGIAVGTYSSIFIATASL 286


>gi|317052681|ref|YP_004113797.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Desulfurispirillum indicum S5]
 gi|316947765|gb|ADU67241.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfurispirillum indicum S5]
          Length = 1058

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/567 (12%), Positives = 166/567 (29%), Gaps = 32/567 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G        L    ++++P  +P   +            V     
Sbjct: 8   RPIFASVVSIVIILAGAAA-----LRVLPVEQYPDVVPPQVM---------VSAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D +   +    ++  + ++       +        I ++FA     +  A  V   +Q 
Sbjct: 54  ADVMADSVAAALEQEINGVENMIYMESTAMDDGYLNIAITFAFGTDPDQAAINVNNRVQA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   +         +++      +    ++  S   +   +D++       
Sbjct: 114 ALSRLPQAVRDLGVRVEARSTSILMVPLLYSPEASKDSVFLSNYALLNVLDELVRLPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L Q   T   ++      +        G     +     +
Sbjct: 174 NASLFAAEDYSMRVWLSPDKLAQYQLTPTDVAAAIREQSAQFAAGRLGAEPSPEGQAFTF 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++S                +    I                 +           
Sbjct: 234 TVATRGQMS-------------SPEEFEQIILRSGADGSTLRLGDVARVELGSRSYAFSA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T +        L           +          S   
Sbjct: 281 KYDGQSATPLGIYLQPGANALDTADRVYETLDRLAQNFPDDVAYTIAYDTTEFVRISIQE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V FM + + +  L+   +I +++I T A + + G ++ L ++ G+V
Sbjct: 341 VVITLMIAVALVVLVTFMFLQHLRATLIPVAAIPVSLIGTFAGMLVFGFSVNLLTLFGLV 400

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD+ I+V E +      +N     +      +    +  S +  +     + F 
Sbjct: 401 LAIGIVVDNAIIVMENVDRLMRERNIRAREASIETMKQVSGAVISSTLVLVAVFAPVTFL 460

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG +    R FA+T+ +S+++S   A+++  AM   ++  +  +      L         
Sbjct: 461 GGMSGELYRQFAVTIAVSVVVSGVVALTLTPAMCAMLLDKQSHRVWSFFTLFNRVFEKLT 520

Query: 538 IAIQFMRARFWGVGISILFSICSICLL 564
               +   +     +       +I  L
Sbjct: 521 NLFVWCVEKLLRRPLLGCLLFVAIIGL 547



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 83/239 (34%), Gaps = 5/239 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L S      +  +        + LQ          RV E + +           
Sbjct: 265 DVARVELGSRSYAFSAKYDGQSATPLGIYLQPGANALDTADRVYETLDRLAQNFPDDVAY 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    +   +    I  +I  A+ +L+           L  +  + + +  T    
Sbjct: 325 TIAYDTTEFVRISIQEVVITLMIAVALVVLVTFMFLQHLRATLIPVAAIPVSLIGTFAGM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +FG   NL  +  ++  IG  V++ ++V + + + M+        R+   +++ +  G 
Sbjct: 385 LVFGFSVNLLTLFGLVLAIGIVVDNAIIVMENVDRLMRERNIRA--REASIETMKQVSGA 442

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + +++       P+   G   G +   FA+ +A  +VV+   ++ +   +   + D +
Sbjct: 443 VISSTLVLVAVFAPVTFLGGMSGELYRQFAVTIAVSVVVSGVVALTLTPAMCAMLLDKQ 501



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 59/151 (39%), Gaps = 7/151 (4%)

Query: 679  AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  ++ +W   +   T +   +       A+ G   ++     +L LIG +  + 
Sbjct: 881  MVFLILAAQYERWTLPMAVATAVPFGVLGAALAAAMRGFPNDIYFQVGLLVLIGLAAKNA 940

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI-- 794
            +++ +   +N K   T +S  +    +  +     V T+M   I  LP+    G   +  
Sbjct: 941  ILIVEFAAQNRK---TGMSAFESALAAAQQRFRAIVMTAMTFIIGTLPLVFASGAGAVSR 997

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  +  G+++A+S ++       + + +
Sbjct: 998  QEIGTVVVGGMILASSLALVFVPLFYMLLEN 1028


>gi|86608203|ref|YP_476965.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Synechococcus
           sp. JA-2-3B'a(2-13)]
 gi|86556745|gb|ABD01702.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 1069

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/587 (13%), Positives = 170/587 (28%), Gaps = 43/587 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   +I  +G +       P   +D +P   P               + +   
Sbjct: 8   RRPVFASVCSILIVLVGAVSI-----PLLPVDYYPQVAPPA-------------VRVTAV 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++    + L   +        I   S     ++IT++F+  R  +  A  V 
Sbjct: 50  YPGANAETVETAVTNVLEQEINGVEGIRSIASVSSSNGTSQITVTFSPDRDLDTAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTT-EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +     +L  +  +N +          +++     +      +  S        D + 
Sbjct: 110 NRVARAQGRLPAEVIQNGISVEKAGDSAFVLVLALRSEAGEYDELFLSNYAELFVRDALR 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                   +        +    DP+RL     T   +       N        G +    
Sbjct: 170 RIRGVSDVIIFGERTYAMRIWLDPTRLASYGLTALDVVNAVRQQNIQVPAGQIGGQPSPP 229

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
               Q  V+    +S             +  +    +                 +     
Sbjct: 230 DQEFQISVQATGRLS-------------QPEEFAQIVLKANADGSLVRIADVGRVELGAQ 276

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +          + +   +            A L     P  +  +        
Sbjct: 277 SYDTFFRIGGQEAVGIAITQQPDANALEVSRQVRQTLAQLAESFPPGLIYEIPFDATLFI 336

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T     GLV++VLF+ +   +  L+   +I + ++ T A + L G ++   
Sbjct: 337 TESVQEVIFTLLQAIGLVVLVLFIFLQDWRVTLIPTVTIPVALLGTFAFVRLFGFSINTL 396

Query: 416 SIAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++ G+ L  GL VD  I+V E I      +          G +     +  + +  L   
Sbjct: 397 TLFGLTLATGLVVDDTIVVVENISRYIRDRGMRPLQGASAGMNEVLGAVIATTLVLLGLF 456

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V + FF G +    + FA+T+ +S+ +S F AI++  A+   +I  +         L  F
Sbjct: 457 VPVAFFPGTSGRIYQQFAVTIAVSVSLSTFNAITLAPALSALLI--RPRSEQMFWLLRWF 514

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
               + I   + R     V + +L     I  L      + +   G 
Sbjct: 515 DRAVEGIRAAYCRLLELVVKLRLLVVTGFIACLGLTYWLFQVVPTGF 561



 Score = 88.2 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 90/281 (32%), Gaps = 9/281 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  +           +   Q+ + AN    L  +                F     
Sbjct: 228 PPDQEFQISVQATGRLSQPEEFAQIVLKANADGSLVRIADVGRVELGAQSYDTFFRIGGQ 287

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             V +            V   V++ + ++           +    +  +       +   
Sbjct: 288 EAVGIAITQQPDANALEVSRQVRQTLAQLAESFPPGLIYEIPFDATLFITESVQEVIFTL 347

Query: 677 AIAMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             A+ + + + F     W   L    T+ + +  T  F  LFG   N   +  +    G 
Sbjct: 348 LQAIGLVVLVLFIFLQDWRVTLIPTVTIPVALLGTFAFVRLFGFSINTLTLFGLTLATGL 407

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + + + ++     +         +NE LG  + T++      +P+A + G+
Sbjct: 408 VVDDTIVVVENISRYIR--DRGMRPLQGASAGMNEVLGAVIATTLVLLGLFVPVAFFPGT 465

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                  FA+ +A  + ++  ++I +A  +   +   R++ 
Sbjct: 466 SGRIYQQFAVTIAVSVSLSTFNAITLAPALSALLIRPRSEQ 506



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 58/146 (39%), Gaps = 7/146 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   + ++ + + +  +F+ Y   L  +  + L +   L    L G+  ++     +
Sbjct: 876  QAPLIFALGSVFVFLVLAAQFESYVDPLIILLAVPLAVLGALLAQLLRGLTNDVFCQVGL 935

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG +  + +++ +      +L    I       ++        + T+++  + + P+
Sbjct: 936  VMLIGLASKNSILIVEFAN---QLVAQGIPLVKAAVQAAETRFRAILMTALSTILGIFPL 992

Query: 787  AVWGGSVI---GSFAIPMAFGIVVAA 809
            AV  G+      S    +  G+ V+ 
Sbjct: 993  AVASGAGAASRQSLGTAVIGGMFVST 1018


>gi|120610050|ref|YP_969728.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acidovorax
           citrulli AAC00-1]
 gi|120588514|gb|ABM31954.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax citrulli AAC00-1]
          Length = 1081

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/585 (11%), Positives = 157/585 (26%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P   P + +                  
Sbjct: 10  RPIFAGVLSVLIFLAGLIA-----LRALPISEYPEVAPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++FA     +     V   +  
Sbjct: 56  PKVIAETVATPLEESINGVEGMLYMGSQATTDGVMTLTVTFALGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++       
Sbjct: 116 AEPRLPEEVRRLGVTTVKSAPDLTMVVHMVSPNGRYDIDYLRNYAVLNVKDRLARIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   +   +       N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRAWLDPQKVAQRGLSAGDVVAAIRGQNVQAAAGVVGQSPGLPGVDMQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++ +              +    I                 +    A      
Sbjct: 236 SINARGRLATVE-------------EFGDIIVKTGADGAVTRLRDVARLELGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +            A L+          +          S   
Sbjct: 283 LLNNDPAVGMGVFQAPGSNALDISANVRATMAELQKHMPEGVEFRIAYDPTQFVRASIQS 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++V+ T A+L LLG ++   S+ G+V
Sbjct: 343 VIQTLLEAIALVVIVVILFLQTWRASIIPLLAVPVSVVGTFAVLHLLGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   +++        +             
Sbjct: 463 GLTGQFYRQFAVTIAISTVISAINSLTLSPALSALLLKGHHEPKDALTRGMDRVLGGFFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R      G           +L  + +  G  +     +
Sbjct: 523 RFNRVFHRGSEAYSGGVRRVIGRKALMLAIYLVLVGATWGLFKAV 567



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/396 (10%), Positives = 120/396 (30%), Gaps = 32/396 (8%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
            ++    ++A+ +I D+ I            G G   GF + +     +      + V+A 
Sbjct: 654  AVAGQLNQAFGSIQDAFIAMF---PPPPVAGLGTTGGFKLQIEDRASLGYGAMDAAVKAF 710

Query: 511  MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
            M    +  ++  +  +       +   I     R     V          +  L+ +  N
Sbjct: 711  MAKAYQTPELAGLFTSWQVNVPQLYADIDRTKARQLGVPVTDIFETLQIYLGSLYANDFN 770

Query: 571  YG-----------------IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                                +  G +++       V LS +     S         N   
Sbjct: 771  QFGRTYSVRVQADAPYRARAEDVGLLKVRSTTGEMVPLSALMKIENSFGPERAMRYNGFL 830

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              +             AQ  V  +  + +   +                       ++  
Sbjct: 831  SADVNGGPAPGFSSGQAQAAVERIAAETLPPGISF-----EWTELTYQEILAGNSAVLVF 885

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ + + + +  +++     +  I  + + +   +    L   + N+     ++ L+G 
Sbjct: 886  PLAILLVFLVLAAQYESLTLPIAIILIVPMGLMAAMAGVWLTRGDNNVFTQIGLIVLVGL 945

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +  R+   L     +      ++    L   + TS+A  + VLP+ +    
Sbjct: 946  SAKNAILIVEFARE---LEFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGA 1002

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  +  +  + +  G++   +  +F+     + +  
Sbjct: 1003 GSEMRSAMGVAVFAGMIGVTAFGLFLTPVFYVVLRR 1038



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 88/228 (38%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L +     +      G     +        S      +  ++K + E V  
Sbjct: 275 AADYSLRSLLNNDPAVGMGVFQAPGSNALDI--------SANVRATMAELQKHMPEGVEF 326

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               +         + +I+  +  + +  I +++++     W  ++  +  + + +  T 
Sbjct: 327 RIAYDPTQFVRASIQSVIQTLLEAIALVVIVVILFLQ---TWRASIIPLLAVPVSVVGTF 383

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               L G   N  ++  ++  IG  V+D +VV + + +N++     ++ R+   +++ E 
Sbjct: 384 AVLHLLGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEA---GLTPREATYRAMREV 440

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            G  +  ++      +P+A      G     FA+ +A   V++A +S+
Sbjct: 441 SGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTVISAINSL 488


>gi|148554075|ref|YP_001261657.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Sphingomonas
           wittichii RW1]
 gi|148499265|gb|ABQ67519.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingomonas wittichii RW1]
          Length = 1062

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/605 (12%), Positives = 173/605 (28%), Gaps = 40/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I  +G L           + ++P  +P               + +   
Sbjct: 9   KRPIFAGVIAVVITIVGALA-----FFGLPISQYPDVVPPT-------------VTVSAT 50

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +    +  L   +     +   S +   +    IT++F      +     V 
Sbjct: 51  YPGASAETIADTVASPLEQEINGVDDMLYMSSQATSDGRLTITVTFKLGTDLDEAQVLVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  D ++  +VT       I+++              S   + Q  D++  
Sbjct: 111 NRVALAEPRLPEDVRRQGVVTRKTSPDFILVANLISPDNSLDRGYISNYALTQMRDRLAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP R      T  ++       N        G       
Sbjct: 171 LDGVGEVRLFGARDYAMRIWIDPGRAAARNMTAGEIVAALRAQNVQVAAGAIGKPPEATG 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +  VE +  +S                +    +   +             +      
Sbjct: 231 -AYELNVETQGRLS-------------TPQQFADIVIKSDAEGHLTRLKDVARVELGAED 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L+           +   +   T +       ++           V         
Sbjct: 277 YGINMYLSGQPSLGIAVFQRPGSNALATADAVLAELKLMSEKFPRGLDYRVIYNPTNFIR 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S +  + T      LV+IV+ + +   +  ++   +I +++I T A+L+ +G +L   S
Sbjct: 337 ESVNAVQHTLLEAVVLVVIVILVFLQSWRAAIIPVIAIPVSLIGTFAVLAAMGYSLNNLS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIA 473
           + G+VL IG+ VD  I+V E +        S   +          A   I        + 
Sbjct: 397 LFGLVLAIGIVVDDAIVVVENVERNLEHGLSPMQASFRSMDEVSTALVAIVLVLCAVFVP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           T+ L    G   R FA+T+  + +IS+  ++++  A+   ++R K              +
Sbjct: 457 TMFLTGLTGEFYRQFAVTIASATIISLILSLTLSPALAARLLRPKADHLPAGGWRRMAAI 516

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   F R   +    +         +LF++     +         V      D   
Sbjct: 517 GAQRFNAGFDRLSNFYAASTRKLLARPKRVLFSYAGLLALTAALFGATPVGFIPSQDQGY 576

Query: 594 VRSNL 598
           + + +
Sbjct: 577 LMTAI 581



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 64/169 (37%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
              ++    + + + + +  +F+     L  I  + + +   +    L G++ N+     +
Sbjct: 876  AAMIVFAAAVLFVFLVLAAQFESLMLPLAIILIVPMTLLAAMTGVNLRGMDNNILTQIGL 935

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG +  + +++ +  +   +     +S  +   ++  + L   + TS A  + V+P+
Sbjct: 936  VVLIGLAAKNAILIVEFAK---QAEEEGLSPVEAAVRAAKDRLRPILMTSFAFILGVVPL 992

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +    G  +  +    +  G++      +       +       + A+
Sbjct: 993  VIATGPGAELRQALGTAVFSGMLGVTFFGLVFTPTFYVATRSLADRFAK 1041



 Score = 38.5 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 57/144 (39%), Gaps = 14/144 (9%)

Query: 689 KWYFALGAITTLILDIT---KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            W  A+  +  + + +      L      G   N  ++  ++  IG  V+D +VV + + 
Sbjct: 363 SWRAAIIPVIAIPVSLIGTFAVLAAM---GYSLNNLSLFGLVLAIGIVVDDAIVVVENVE 419

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP--MAVWG--GSVIGSFAIPM 801
           +N+      +S      +S++E    ++   +    +V    M + G  G     FA+ +
Sbjct: 420 RNL---EHGLSPMQASFRSMDEV-STALVAIVLVLCAVFVPTMFLTGLTGEFYRQFAVTI 475

Query: 802 AFGIVVAASSSIFIAAPILLFIYD 825
           A   +++   S+ ++  +   +  
Sbjct: 476 ASATIISLILSLTLSPALAARLLR 499


>gi|83647160|ref|YP_435595.1| preprotein translocase subunit SecF [Hahella chejuensis KCTC 2396]
 gi|83635203|gb|ABC31170.1| protein-export membrane protein SecF [Hahella chejuensis KCTC 2396]
          Length = 307

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 160/284 (56%), Gaps = 6/284 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FM      + +S++  I SI  + T GL++G+DF GG  + V   +   ++ VR  LE
Sbjct: 7   YNFMGIAKPALALSVIMIIISIVSIATRGLSFGLDFTGGTLVEVEYAKAPQINDVRHQLE 66

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           + +  +   Q F  + + LVRLQ           +   V   ++      T+  +E VG 
Sbjct: 67  AHKYENFVVQKFGSDTSILVRLQ-----QEHSESIGTEVVGALSANGEQVTLSRSEFVGS 121

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  EL  +G +G++++   +++YI  RF++ F++GA+  L+ D+  T+G F+LF  +F+
Sbjct: 122 QVGEELREQGGLGLLLALGVIMLYIAFRFQFKFSVGAVMALVHDVIITVGMFSLFQWDFD 181

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVL +IGYS+ND +VV DR+R+N +      +  ++I+ S+ +TL R++ T +  
Sbjct: 182 LNVLAAVLAVIGYSLNDTIVVSDRVRENFRRL-REETPIEIINISLTQTLSRTIVTGLTT 240

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            + ++ + ++GG  +  F+  +  GI+V   SSI++A+ +LL +
Sbjct: 241 LLVLVALFLFGGPALKGFSTALIIGIIVGTYSSIYVASNLLLIM 284


>gi|271967386|ref|YP_003341582.1| preprotein translocase subunit SecF [Streptosporangium roseum DSM
           43021]
 gi|270510561|gb|ACZ88839.1| preprotein translocase subunit SecF [Streptosporangium roseum DSM
           43021]
          Length = 347

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 144/310 (46%), Gaps = 15/310 (4%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L    + + F+  +    G+S +  + SI  L  +GLN G++FKGG      A    D
Sbjct: 6   RRLYRGEVNVDFVGRKKLWYGLSAVLLLISIAGLVVNGLNLGVEFKGGSVFSFKAPA-AD 64

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR+      +  +  Q  +              +S+ +  V  + K    E      
Sbjct: 65  IQEVRTTFNDAGVHQVIAQTTNNGWRVT-------TESLPEEEVTTVQKAVAKEFGLQQN 117

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
             N +++G     ++  K I+G+I+  +A+++Y+ + F+W  AL A+  L+ D+  T G 
Sbjct: 118 QVNLQVIGASWGGQVADKAIIGLIVFMLAIILYLTLAFEWKMALAAVVALLHDLVITAGV 177

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINET 768
           +A  G E     +   LT++GYS+ D VVV+D +++      T   +++    + ++N T
Sbjct: 178 YAWSGFEVTPATLLGFLTILGYSLYDAVVVFDMIKEVTAKLGTTSKMTYTQAANNALNHT 237

Query: 769 LGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           L RS+ T++ A + V  +       +G   +   ++ +  G++V   SS+ +A P+L+ +
Sbjct: 238 LIRSLNTTLVAILPVAAILFIGTTLFGAGTLKDLSLALFVGMIVGTYSSLCVATPLLVTL 297

Query: 824 YDWRAKNARI 833
            +  ++   I
Sbjct: 298 KERESRYQAI 307


>gi|254383609|ref|ZP_04998959.1| protein-export membrane protein SecF [Streptomyces sp. Mg1]
 gi|194342504|gb|EDX23470.1| protein-export membrane protein SecF [Streptomyces sp. Mg1]
          Length = 359

 Score =  189 bits (480), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 86/301 (28%), Positives = 146/301 (48%), Gaps = 14/301 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+  RF   G+SIL +I +I  L   GLN GI+FKGG          V ++    + E
Sbjct: 18  YDFVGKRFLWYGVSILITITAIVALAVQGLNMGIEFKGGAVFTTP-KTAVSVAKATEDAE 76

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                D   Q         +R+Q    D+ +   V + +   +          N ++VGP
Sbjct: 77  KASGHDAIVQELGTGG---LRIQITGLDTASAADVKKQLASDLK---VDQAGINADLVGP 130

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++  K   G+ +  I ++IY+ I F+W  A+ A+  LI D+T T+G +AL G E  
Sbjct: 131 SWGEQIANKAWTGLGVFMILVVIYLAIAFEWRMAVAALIALIHDLTITVGVYALVGFEVT 190

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++GYS+ D VVV+D +++  K  T     +F ++ ++SIN TL RS+ T++
Sbjct: 191 PGTVIGLLTILGYSLYDTVVVFDGLKEGSKDITKQTRYTFSEIANRSINGTLVRSINTTV 250

Query: 778 AAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A + V  +   GG      ++   ++ +  G+   A SSIFIA P+++ + +       
Sbjct: 251 VALLPVGALLFIGGGFLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVVDLKEREPGMKA 310

Query: 833 I 833
           +
Sbjct: 311 L 311


>gi|222082589|ref|YP_002541954.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
 gi|221727268|gb|ACM30357.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
          Length = 1044

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/686 (12%), Positives = 188/686 (27%), Gaps = 45/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        + ++P   P               +      
Sbjct: 8   RPIFAWVIAIVIMLAGALSIL-----TLSISQYPQIAPTT-----------VRITATYSG 51

Query: 63  DDF--VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
            D   V   +    ++  + +        +     Q  I+L+F +    +    +V   L
Sbjct: 52  ADAATVENSVTKVIEQGMTGIDNLDYMTSTSTSTGQASISLTFTNKADADVAQMQVQNKL 111

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q V ++L    +   +  +      +++           + + +  I     D +     
Sbjct: 112 QLVTAQLPTTVQTTGITVSKSTSNFLMVIGFVSTDGKLSSNDIADYINSTLNDTLKRVSG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP +L +       ++      N+       G    R     
Sbjct: 172 VGDTQLFGSG-YAMRIWVDPDKLAKYQLMIGDVTTAIEAQNSQVSAGQLGALPQRKGQQL 230

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V  K  +                 +    I                 +         
Sbjct: 231 NATVTAKSRL-------------QTPEQFNNIILKSLSDGSLVRLNDVATVELGAESYTS 277

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +              +  +   T E        L+    P    +           S 
Sbjct: 278 SSIYNGHPSAGLAIMLASGANAIDTAEAVQSTINNLKETLPPNVEVVYPYDTTPFVKLSI 337

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV IV+F+ +   +  L+   ++ + ++ T  +LS  G ++   ++ G
Sbjct: 338 EDVVKTLFEAIVLVFIVMFVFLQSLRATLIPTLAVPVVLLGTFGILSAFGYSINTLTMFG 397

Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +      +  S   +     S      I  + + + +   + 
Sbjct: 398 MVLAIGLLVDDAIVVVENVERVMEEEGLSPREATLKSMSEITGALIGIATVLSAVFIPMA 457

Query: 478 FFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           FF G  G   R F++T+  ++++S+  A+ +  A+   I+R  +  S        F    
Sbjct: 458 FFSGSVGVIYRQFSVTIVSAMVLSVIVALILTPALCATILRKPEHGSKQRGLFGWFNHNF 517

Query: 536 DCIAIQFMR------ARFWGVGISILFSICSICLLFTHGLNY--GIDFKGGIQLGVLANR 587
           +     + R       R     +  +    ++  LF    +     + +G +   V    
Sbjct: 518 ERGTRGYQRSVGGIIKRTPLFILIFVLITAAVGYLFNRLPSSFLPDEDQGILITSVQLPA 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     L  +    ++ +    +    V      G           +K       P
Sbjct: 578 GAADDRTEKVLRQVTDYYLNNEKDYVDGVMGVAGFGFGGQGQNVGLAFIKLKDFALRTTP 637

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
            S  Q           ++    +  +
Sbjct: 638 QSKAQAIAGRAMGAFSKIKDGSVFAL 663



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 79/199 (39%), Gaps = 8/199 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               + A    +  +K+ +   V +    +T         ++++     +++  I M ++
Sbjct: 299 AIDTAEAVQSTINNLKETLPPNVEVVYPYDTTPFVKLSIEDVVKTLFEAIVLVFIVMFVF 358

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +         L     + + +  T G  + FG   N   +  ++  IG  V+D +VV + 
Sbjct: 359 LQ---SLRATLIPTLAVPVVLLGTFGILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           +     +    +S R+   KS++E  G  +  +       +PMA + GSV      F++ 
Sbjct: 416 V--ERVMEEEGLSPREATLKSMSEITGALIGIATVLSAVFIPMAFFSGSVGVIYRQFSVT 473

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   +V++   ++ +   +
Sbjct: 474 IVSAMVLSVIVALILTPAL 492



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 81/228 (35%), Gaps = 11/228 (4%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++    PG S                        +          +  + 
Sbjct: 813  ERYNGSSAVEIQGAAAPGVSSGDAMNEIDQIMATLPPGFSHEWTSLSAQEKLSGNQASQL 872

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  +A+     +   W   L  + ++ + I   L    +FG   ++     +LT
Sbjct: 873  YAISILVVFLALA---ALYESWSIPLAVMLSVPIGIFGALLAATIFGQSNDVYFKVGLLT 929

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             IG +  + +++ +   +      +  +  D   ++  + L   + TS+A  + V+P+A+
Sbjct: 930  TIGLAAKNAILIVEFAIE---QQNSGKNLIDATLEASRQRLRPILMTSLAFILGVMPLAI 986

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G     S  I +  G++ A    +F     LLF+   R    ++
Sbjct: 987  ANGAGSGSQNSIGIGVMGGMISATVLGVFFIP--LLFVSVRRIFKGKV 1032


>gi|56751744|ref|YP_172445.1| RND multidrug efflux transporter [Synechococcus elongatus PCC 6301]
 gi|56686703|dbj|BAD79925.1| RND multidrug efflux transporter [Synechococcus elongatus PCC 6301]
          Length = 1056

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 88/673 (13%), Positives = 190/673 (28%), Gaps = 37/673 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I   GL+      LP   +++ P   P          +          
Sbjct: 11  KRPVLTTVCSILITLGGLV-----CLPILPIEQLPDIAPP---------QIQVSATYVGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + V   +    +   + ++       +    Q+ I + F  +R  +     V   +  
Sbjct: 57  DAETVENTVTSILENQINGVEGMEYITSTSAIGQSSIQVYFDPTRSPDLAQVDVNNLVSV 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  +  T      +     +       A   S  +       +   +   
Sbjct: 117 AIPQLPQAVQQQGIAVTQSSPSILQFYTFSSPTGEFDAQFISNYLSLYVQPALARVKGVG 176

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +   +    DP+RL     T   ++      N        G   +       +
Sbjct: 177 QANLFGNLEYSMRLWLDPNRLASYGLTAEDVASALQSQNQIIPVGQVGGPPVNSDQAYTF 236

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           ++     + G         F+         +                   +         
Sbjct: 237 IL----RLQGQGQLSTVEQFN-------NVVLKTGEDGTLVRVKDVGRAEEGAQSYSVTL 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +            A+L     P     +          S S 
Sbjct: 286 AADGRPGVGLGIYQLPGSNAIDVANGIREQLAILEQQFPPGLEGKLVFDVTDFVNASLSE 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  L+   +I ++++ TLA +   G ++ L ++ G+V
Sbjct: 346 VLITLVQAIALVILVIFIFLQDWRTTLIPAIAIPVSLVGTLAFIQAFGFSINLLTLFGLV 405

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I E+  + ++   +        +  +  +++      + + FF 
Sbjct: 406 LATGLVVDDAIVVVEAITEKIEEGKTPLQASIEAMDILFGAVIATSVVLFAVFIPVAFFP 465

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  +ILIS F A++   AM   +                     +  
Sbjct: 466 GATGRIYQQFALTLTFTILISTFNALTFSPAMSALL------LRPAKQQQGWLGKFFNLF 519

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              F R R   +G S   +I         GL        G          V        L
Sbjct: 520 NAGFDRVR---IGYSKALAIIDRLKFLVIGLFAAGLALTGWLFTTTPTGFVPTEDQGYFL 576

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
             +   + +  N+  +    ++   +   SV  T V+                 + +   
Sbjct: 577 GLIIGPEGAPLNYTQKVGQKIQSILETEPSVTSTAVISGFSFIGQGNNLGIYFASLKPWD 636

Query: 659 PKISRELIRKGIV 671
            + + +   + IV
Sbjct: 637 ERKAADQSAEAIV 649



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 79/202 (39%), Gaps = 9/202 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             L +++++    +    + +          E++   +  + +  + + I++     W  
Sbjct: 314 EQLAILEQQFPPGLEGKLVFDVTDFVNASLSEVLITLVQAIALVILVIFIFLQ---DWRT 370

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  TL F   FG   NL  +  ++   G  V+D +VV + + +      
Sbjct: 371 TLIPAIAIPVSLVGTLAFIQAFGFSINLLTLFGLVLATGLVVDDAIVVVEAITE---KIE 427

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAA 809
              +      ++++   G  + TS+  F   +P+A + G+       FA+ + F I+++ 
Sbjct: 428 EGKTPLQASIEAMDILFGAVIATSVVLFAVFIPVAFFPGATGRIYQQFALTLTFTILIST 487

Query: 810 SSSIFIAAPILLFIYDWRAKNA 831
            +++  +  +   +     +  
Sbjct: 488 FNALTFSPAMSALLLRPAKQQQ 509



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 6/140 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  + T+ L I   L F  L GI  ++ A   ++ LIG +  + +++ D   +      
Sbjct: 902  PLIILLTVPLAILGALVFLNLRGIPLDVYAQVGLVMLIGLASKNAILIVDYANE---AVA 958

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              + + +   ++        V T++++ I   P+ +    G +   S    +  G++VA 
Sbjct: 959  KGMGYTEAALEAAKLRFRPIVMTAISSLIGFFPLVIAQGAGAASRWSLGTVVFGGLLVAT 1018

Query: 810  SSSIFIAAPILLFIYDWRAK 829
              S+ I     + +     +
Sbjct: 1019 VLSLLIVPANYVILKSITRR 1038


>gi|121595158|ref|YP_987054.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acidovorax
           sp. JS42]
 gi|120607238|gb|ABM42978.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax sp. JS42]
          Length = 1055

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/643 (11%), Positives = 173/643 (26%), Gaps = 60/643 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L           L+++P   P               + +    
Sbjct: 8   RPIFAWVLSIIIMLAGGLAIF-----TLPLEQYPDIAPP-------------RVTISAQY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   LK    +           ++  TL+FA     +    +V  
Sbjct: 50  TGASAETVENSVTQIIEQQLKGIDNMIYMGSTSDASGRSATTLTFAPGTNIDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   ++L    K   +      +  +V            A++    +    +D IG  
Sbjct: 110 KLQSAMNRLPDAVKSRGVFVNKGGQDYLVTYSFFSGDPNMSAVDIGDYLNSNLVDVIGRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP+++ +     + +       N        G        
Sbjct: 170 DGVGDIRVFGT-FYAMRLWMDPAKMEKFQLMPSDLISALNAQNAQVSAGQLGALPAVPDQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +    +                 +      +
Sbjct: 229 QLNATITARTKL-------------QTVQEFEDIVLKTATDGSVVTVKDVARVELGPDNL 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L+          V   +      
Sbjct: 276 SVKAKLNGRPGAGMGIVLADGANAMAVSDAVAAKLAELKPYFPNQIDYFVSSDSTPFVRA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S             LV+IV+F+ +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SIREVATALGEAMVLVVIVMFIFLQNFRATLIPAIAVPVVLLGTFGVLAAAGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +    S   +           +    +T     V 
Sbjct: 396 FALVLAIGLLVDDAIVVVENVERVMHESGLSPKEATRHSMREITPALVGIGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------------- 517
           + FFGG      R F+IT+  ++ +S+  A+++  A+   I++                 
Sbjct: 456 MAFFGGSTGVIYRQFSITIVAAMALSVLVALTLTPALCASILKPSAHLGKDPQVRRGLLG 515

Query: 518 ---KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
              +     + +  +        +     RAR   +  + +       +          +
Sbjct: 516 LNDRFFLWFNRHFETNTLRYQRGVGWMLHRARRMLLIFAAICLAVWWIIGRVPTAFLPDE 575

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
            +G I   V        + ++  L+ + +              
Sbjct: 576 DQGYILANVNLPAGATDARLQDVLDQVNLYFKDVPEVISFNQV 618



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 85/242 (35%), Gaps = 6/242 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                  V +  V           +  +        +  +     +++A +  +     +
Sbjct: 253 TATDGSVVTVKDVARVELGPDNLSVKAKLNGRPGAGMGIVLADGANAMAVSDAVAAKLAE 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           +    P               R  IR+    +  + + ++I ++I  + +   L     +
Sbjct: 313 LKPYFPNQIDYFVSSDSTPFVRASIREVATALGEAMVLVVIVMFIFLQNFRATLIPAIAV 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G  A  G   N   + A++  IG  V+D +VV + +     ++ + +S ++ 
Sbjct: 373 PVVLLGTFGVLAAAGYSINTLTMFALVLAIGLLVDDAIVVVENV--ERVMHESGLSPKEA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
              S+ E     V   +      +PMA +GGS       F+I +   + ++   ++ +  
Sbjct: 431 TRHSMREITPALVGIGLTLSAVFVPMAFFGGSTGVIYRQFSITIVAAMALSVLVALTLTP 490

Query: 818 PI 819
            +
Sbjct: 491 AL 492



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 79/268 (29%), Gaps = 11/268 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                     G   +       V          +     +   N       +         
Sbjct: 780  PHRMLPQDIGKWTVRNKNGEMVPFGAFSKAHWAYGSPQLMRYNGAPAYEMVGSAAPGVSS 839

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             VA   V +++K     I    T  + +         L+    + ++   + +     + 
Sbjct: 840  GVAMKIVEDILKGLPPGIAYEWTGASLQERQSGAQAPLLYA--ISILFVFLCLA---ALY 894

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W   L  +  + L +   L      G+  ++     ++T +G +  + +++ +     
Sbjct: 895  ESWTVPLSVMLAVPLGVLGALLATWTRGLANDVYFQVGLITTVGLASKNAILIVEFA--- 951

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFG 804
            ++L        D   +++   L   + TS+A    V+P+      G     +    +  G
Sbjct: 952  VQLQEQGRKLLDATLEAVRMRLRPILMTSLAFGFGVVPLALGTGAGAGGRNAIGTAVLGG 1011

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
             V +    IF+     L I  W    +R
Sbjct: 1012 TVASTVLGIFMVPVFFLLIRSWFKSRSR 1039


>gi|229526794|ref|ZP_04416198.1| protein-export membrane protein SecD [Vibrio cholerae bv. albensis
           VL426]
 gi|229336952|gb|EEO01970.1| protein-export membrane protein SecD [Vibrio cholerae bv. albensis
           VL426]
          Length = 612

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 152/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRT 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   S++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVSVQAMGND---AFEVRTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMFT +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFTGVFASRALINLVWGRDTRRDVR 611



 Score =  119 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  ++    + 
Sbjct: 586 SMFTGVFASRALINLVWGRDTRR 608


>gi|118578853|ref|YP_900103.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pelobacter
           propionicus DSM 2379]
 gi|118501563|gb|ABK98045.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pelobacter propionicus DSM 2379]
          Length = 1073

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 83/663 (12%), Positives = 185/663 (27%), Gaps = 42/663 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+      +    + ++P+  P               + +    
Sbjct: 9   RPIFATVISLIIVIAGLVA-----MKALPVAQYPTITP-------------VTIQVTTTY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
               +  +    +  + + +        +   S    Q  IT  FA +   +     V  
Sbjct: 51  PGADSKTVGDSVAAPIEAQINGADNLLYMTSTSSNTGQMTITAYFALNVDPDIAQVDVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    K   +    +    +++               +       +D I   
Sbjct: 111 RVNLAMPQLPDAVKTYGVSVQKKSSSPLMIISLYNKDGRYTPEYVNNYANVYVLDAIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +P R+  L  TT+ +       N        G +    S 
Sbjct: 171 NGAGQAQIFGVPDQAMRIWMNPDRMASLGITTSDIQNAVAKQNALFGAGQVGSQPSDKSV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  +            + F   +    + +   + G+                  
Sbjct: 231 QLTFPVVTQ------------SPFVKPSEYENIILRASQDGSAIVRIRDVARAETGRRQY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +D   L        I   +A  +G    +    +   L+          +          
Sbjct: 279 IDDNRLNGYPCAPIIVYQQAGANGLEVSKGVRKVMEDLKKTLPAGIEYTISLDTTEFVRL 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +  ++   ++F+++I T A +  +G ++ L ++
Sbjct: 339 SIEEVIHTLFEAIVLVILVVYLFLQSFRSTIICTVAVFVSLIGTFAGMLAMGFSINLLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCS---LDMGFSRAYSTIFDSNITALIA 473
            GIVL IG+ VD  I+V E +     K       +          +   +        I 
Sbjct: 399 FGIVLAIGMVVDDAIVVVENVESNMIKKHLPPKEATILAMEQIGTSLIAVVLVMACVFIP 458

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   + FAIT+ +S+ +S F A+++  AM  F++++                
Sbjct: 459 AAFLPGTTGQLYKQFAITIVVSVALSGFVALTLTPAMCGFMLKHNPPPQKGFFAWFNRMF 518

Query: 534 IPDCIAI---QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               +       +  +   V   +L  +    +     +                    D
Sbjct: 519 DTFTLKFGDAVVLMIKRMTVAFVLLAVMMFGLVHLFKTIPTSFVPNEDQGYIFTQIMMPD 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +    E     D  F      +N  +   Y   DS  +  V              S+
Sbjct: 579 AASLNRTSEMAMKVDALFAKNPAVENRTMIGGYSLIDSQYKPNVSTFFVTLKDFKERYSS 638

Query: 651 IQN 653
              
Sbjct: 639 GDR 641



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/248 (10%), Positives = 84/248 (33%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        ++  Q    + +  ++ +  V + + + +P 
Sbjct: 263 VRIRDVARAETGRRQYIDDNRLNGYPCAPIIVYQQAGANGLEVSKGVRKVMEDLKKTLPA 322

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                  +   +  R  I + I  +  + + +++ +++    +   +     + + +  T
Sbjct: 323 GIEYTISLDTTEFVRLSIEEVIHTLFEAIVLVILVVYLFLQSFRSTIICTVAVFVSLIGT 382

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   NL  +  ++  IG  V+D +VV + +     +    +  ++    ++ +
Sbjct: 383 FAGMLAMGFSINLLTLFGIVLAIGMVVDDAIVVVENV--ESNMIKKHLPPKEATILAMEQ 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +   +      +P A   G+       FAI +   + ++   ++ +   +  F+ 
Sbjct: 441 IGTSLIAVVLVMACVFIPAAFLPGTTGQLYKQFAITIVVSVALSGFVALTLTPAMCGFML 500

Query: 825 DWRAKNAR 832
                  +
Sbjct: 501 KHNPPPQK 508



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/374 (11%), Positives = 97/374 (25%), Gaps = 27/374 (7%)

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ER    +R  +    ++      A  TI D     +    +      G    +    G  
Sbjct: 634 ERYSSGDRAKKENAEAVLKQIGGAARTIKDGVTIPIAPPAIPGIGTTGGFEFWIQDKGSG 693

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
               ++ A    +  +    +  ++  ++    +    +   +           V     
Sbjct: 694 EPARLYEA---TQQFLAKARQRPELTGLNTTFRAASQQLKAEVDRSKAVLLGVPVEDVYS 750

Query: 556 FSICSICLLFTHGLNYG----------------IDFKGGIQLGVLANRPVDLSVVRSNLE 599
                   +     N                                  +       N  
Sbjct: 751 ALQAQFGSIQVSQFNQYSRVWNVILQSDAPYRRTPADITRLYTRSTTGQMVPLSAVVNTS 810

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +   D+           +         S    + +E V  ++                 
Sbjct: 811 YVTNPDLVPHFNGFPAAQVTGNAQAGFSSGEAIKAMEEVATEVLPQGYSFAWSGMAYEEK 870

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF 718
           K                 + + + +  +F+ W      +T +   I   L F  + G+  
Sbjct: 871 KSGG----TSAAAFAFGLVIVFLLLAAQFESWTLPGSVMTAVPFGILGALMFNWMRGLSN 926

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           ++     +L LIG    + V+   R+   ++L    +S  D   +S  E     + TS+A
Sbjct: 927 DVYFQIGLLVLIGLGAKNAVL---RVTFAVELREQGLSIMDATVRSGEERFRPIIMTSLA 983

Query: 779 AFISVLPMAVWGGS 792
               VLP+A+  G+
Sbjct: 984 FIFGVLPLAIATGA 997


>gi|299770128|ref|YP_003732154.1| RND protein [Acinetobacter sp. DR1]
 gi|298700216|gb|ADI90781.1| RND protein [Acinetobacter sp. DR1]
          Length = 1036

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/634 (11%), Positives = 170/634 (26%), Gaps = 49/634 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 8   RRPVFAWVIAIFIILFGLLSI-----PKLPIARFPSVAPP-------------QVNISAT 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +I+ +F      E     V 
Sbjct: 50  YPGATAKTINDSVVTLIERELSGVKNLLYYSATTDTSGTAEISATFKPGTDVEMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQIVRQQGLQVEASSSGFLMLVGINSPNGQYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          L    DP++L     + + ++      N        G       
Sbjct: 170 VEGVGKVQSFGA-EKALRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPANKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S +              +        +            N+      
Sbjct: 229 QLITIPLSAQGQLSSVE-------------QFRNISLKSKTNGSVIRLSDVANVEIGSQA 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 276 YNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPEGMQFSIPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 336 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  +   +         S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLNPKEATSKAMKEITSPIIGITLVLSAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSID 524
            + F  G      + F +TM +SIL S   A+ +  A+   I         +       D
Sbjct: 456 PMAFASGSVGIIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           +           +   ++  I    + +        + +G       
Sbjct: 516 RSFDKVTKKYELMLLKIIKHTVPVMMIFVVITGITFAGMKYWPTAFMPEEDQGWFMTSFQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                     R+ +   +       +       +
Sbjct: 576 LPSDATAERTRNVVNEFENSLKDKPDVKSNTTIM 609



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 85/239 (35%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V     +    +++   +P 
Sbjct: 261 IRLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 321 GMQFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  ++ ++   K
Sbjct: 378 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLNPKEATSK 434

Query: 764 SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPM    G   I    F + M+  I+ +A  ++ +   +
Sbjct: 435 AMKEITSPIIGITLVLSAVFLPMAFASGSVGIIYKQFTLTMSVSILFSALLALILTPAL 493



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 786  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 845

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 846  GIGFEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 897

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 898  PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 954

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 955  TVAAAKLRLRPILMTSLAFTCGVIPLVIATGAS-SETQHALGTGVFGGMISATILA 1009


>gi|27526399|emb|CAD48862.1| EefB inner membrane protein [Enterobacter aerogenes]
          Length = 1035

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/683 (10%), Positives = 185/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G L           + ++P   P                     
Sbjct: 8   RRPVFAWVIAILIMLAGALAI-----RTLPVGQYPDVAPPAVK---------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L        +        IT++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFTSTSSSDGTVSITVTFEQGTDPDTAQVQVQNKVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + +++ +     +   +++         + + + S  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQSGVTVEKSQSSFLLILAVYDKTNRATSSDISDWLVSNMQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWMDPTKLASYSLMPSDVQSAIEAQNVQVSAGKIGALPSSNTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTPDQFKAIIVKSQSDGSVVRLSDVARVEMGSEDYTAT 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 ANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQGYDIAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEALPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F++T+  ++++S+  A+++  A+   ++ + K                 
Sbjct: 460 FGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALLSHSKPHDKGFFGAFNRLWGRT 519

Query: 537 CIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q        R   +  +      ++ L         +  +   ++ V    P   +
Sbjct: 520 EDGYQRRVLGGLRRGAVMMGAYALICGAMALAMWKLPGSFLPVEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR--VLEMVKKKITEIVPLST 650
            VR+     Q+ D            +  +         Q        +K         +T
Sbjct: 580 AVRTAEVRRQVTDWFLTKEKANTEVIFTVDGFSFSGSGQNAGMAFVSLKNWSQRKGDENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRANKELGAIRDATLFAM 662



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 93/248 (37%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +    +          +  +     +++    +++    +    +P 
Sbjct: 261 VRLSDVARVEMGSEDYTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + I ++  +++  + +   L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +   ++  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEALPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LPMA +GGS       F++ +   ++++   ++ +   +   + 
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALL 498

Query: 825 DWRAKNAR 832
                + +
Sbjct: 499 SHSKPHDK 506



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 77/252 (30%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A+               + G  S   ++G   F ++ +   G S              
Sbjct: 786  VRASDNSMTPFTAFATTHWEYGPESLVRYNGSAAFEIQGENAAGFSSGAAMDKMEKLADS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    + +++  + +     +   W      I  + L
Sbjct: 846  LPAGSTWAWSGISLQEKLASGQAMSLYAISILVVFLCLA---ALYESWSVPFSVIMVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        L G+  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAATLRGLSNDVYFQVALLTTIGLSSKNAILIVE-FAE--SAVDEGYSLSRAAI 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   V TS+A    VLP+A+    G +   +    +  G + A   ++F     
Sbjct: 960  RAAQTRLRPIVMTSLAFIAGVLPLAIATGAGANSRVAIGTGIIGGTLTATLLAVFFVPLF 1019

Query: 820  LLFIYDWRAKNA 831
             + +     +  
Sbjct: 1020 FVLVKRLFTRPR 1031


>gi|198274248|ref|ZP_03206780.1| hypothetical protein BACPLE_00388 [Bacteroides plebeius DSM 17135]
 gi|198272923|gb|EDY97192.1| hypothetical protein BACPLE_00388 [Bacteroides plebeius DSM 17135]
          Length = 1010

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/694 (12%), Positives = 193/694 (27%), Gaps = 51/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L  +I   GL+           +  +PS                  +     
Sbjct: 9   RRPVLATVLTIIILLFGLI-----GYTTLGVREYPSVDNPI-----------ISVTCSYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + +   +    ++  + +        + +Q Q +IT+ F  S   E  A+ V   +
Sbjct: 53  GANAEVIENQITEPLEQNINGIPGIRSLSSTSQQGQCRITVEFELSVDLETAANDVRDKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  D     +         I++    I       +E S        +Q+     
Sbjct: 113 SRAQRYLPRDCDPPTVSKADADASPILMV--AIQSNTRSLLELSEIADLTVKEQLQTIPD 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP ++     T   +                           
Sbjct: 171 VSSVSIWGEKRYSMRLWLDPVKMAGYGITPVDVKNAINDQ-------------------- 210

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                     T K   +I   E   +              A +  
Sbjct: 211 NLELPSGSIEGNTMELTLRTMGQMHTAKEFNNIILKEQNGQVVRFSDIGYAELGPADIKS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +    +   +   +   +     +        ++              N      S 
Sbjct: 271 YMKMNGVPMVGVVVIPQPGANHIDIADAVYERMEQMQKDLPDDVEYTYGFDNTRFIRASI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  + T      LV+I++F+ +   +  L+    I +++I    ++ + G ++ + ++  
Sbjct: 331 AEVESTVYEAFVLVIIIIFLFLRDWRVTLIPCIVIPVSLIGAFFVMYVAGFSINVLTMLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I++ E I     +    F +   G    +  +  + IT     + + F
Sbjct: 391 VVLSVGLVVDDAIVMTENIYIRIERGMKPFEAGIEGAKEIFFAVISTTITLAAVFIPIVF 450

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R F+  +  S++IS F A++    +   ++++++ ++        FF   +
Sbjct: 451 MEGTSGRLFREFSFVVAGSVIISSFAALTFTPMLATKLLKHREKQNWFYRKTEPFFEGMN 510

Query: 537 CIAIQ----FMRARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            +  +    F+R R   +    I   +              ++ +  I +   A      
Sbjct: 511 RVYSRSLNAFLRKRVIAIPFTIITLVLIGYLWGEIPAEMAPLEDRSQINIRTRAAEGASY 570

Query: 592 SVVRSNLESLQIGDISFQN---FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             +R   E +     S      F   +        Q      + R    ++        +
Sbjct: 571 EYIRDYTEEINTLVDSIVPDAAFVSARVSSGSGNIQITLKDIKERDYTQMQVAEQISKAI 630

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
            T         + S    R+  + V     A+ I
Sbjct: 631 RTHTKARSFVQQQSSFGGRRASMPVQYVLQAVSI 664



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/206 (11%), Positives = 72/206 (34%), Gaps = 9/206 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +E ++K + + V  +   +          E+        ++  I + +++    
Sbjct: 297 DAVYERMEQMQKDLPDDVEYTYGFDNTRFIRASIAEVESTVYEAFVLVIIIIFLFL---R 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +        + G   N+  + AV+  +G  V+D +V+ + +    
Sbjct: 354 DWRVTLIPCIVIPVSLIGAFFVMYVAGFSINVLTMLAVVLSVGLVVDDAIVMTENI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 +   +   +   E     + T++      +P+    G+       F+  +A  +
Sbjct: 411 IRIERGMKPFEAGIEGAKEIFFAVISTTITLAAVFIPIVFMEGTSGRLFREFSFVVAGSV 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           ++++ +++     +   +   R K  
Sbjct: 471 IISSFAALTFTPMLATKLLKHREKQN 496



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 75/198 (37%), Gaps = 7/198 (3%)

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
              KI   V   T +       K  RE     +   I++ + + + +  +F+ +      +
Sbjct: 815  MDKIAANVLDDTFRTALSGDSKEYRESSSSLMFAFILALVLIYLILSAQFESFKDPFIIM 874

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             T+ L I   L F     I  N+ +   ++ LIG    + +++ +      +        
Sbjct: 875  LTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN---QKQEAGEDK 931

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIF 814
               I  +  + L   + TS +  + +LP+A   G          + +  G++V+   +++
Sbjct: 932  MQAIRDAALQRLRPILMTSASTILGLLPLAFASGEGANQRIAMGVAVVGGMLVSTFLTMY 991

Query: 815  IAAPILLFIYDWRAKNAR 832
            I   I  +I   RAK  R
Sbjct: 992  IVPAIYSYISTNRAKKER 1009


>gi|148926007|ref|ZP_01809693.1| protein-export membrane protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145845486|gb|EDK22578.1| protein-export membrane protein [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 527

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 158/548 (28%), Positives = 288/548 (52%), Gaps = 37/548 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN+   + +I++  +   G+  +LP+FL               +I+LGLDL+GG +++L
Sbjct: 2   MRNSKINYRLIIFMAVFIFGVAFSLPSFLQSE---------RGAKINLGLDLQGGLYMLL 52

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            VD ++ V   ++  +  L     KE I    +    + +  +  D+     + + +   
Sbjct: 53  GVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIAKVENLLKEI 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K + + +      I  +   +  + + A+ Q++E IR R+DQ G++E
Sbjct: 113 -------------KGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAE 159

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR---- 231
            T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +           
Sbjct: 160 PTVAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS 219

Query: 232 ------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     +   +Y ++    + G  L  A      K++  V++ + +  G+++F + 
Sbjct: 220 YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGISDKSNYLVINFTLNAEGSKKFADY 279

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + 
Sbjct: 280 TGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVK 339

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R++G  LG+DSI     A++   V IV+FM++ YG  G+ A+ ++ +NV++ +A++
Sbjct: 340 LLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVLVVVAVM 399

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R   ++  S++ G+  A S I D
Sbjct: 400 AMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRASIEQGYKNAMSAIID 459

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           SNIT+L+ +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + ++  +  +   
Sbjct: 460 SNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSNNTR 519

Query: 526 NPLSRFFL 533
                   
Sbjct: 520 FWFGYRRR 527



 Score =  107 bits (266), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 88/178 (49%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ +++++ + +     + A   +++++   +   A+
Sbjct: 343 QRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGV-AGIFANIAMLVNVLVVVAVMAM 401

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++     ++ R  I++     +   +
Sbjct: 402 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRD---GVNIRASIEQGYKNAMSAII 458

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I     +  +      K+ 
Sbjct: 459 DSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFMQRIEKSN 516


>gi|254000372|ref|YP_003052435.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylovorus sp. SIP3-4]
 gi|253987051|gb|ACT51908.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylovorus sp. SIP3-4]
          Length = 1043

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 176/689 (25%), Gaps = 45/689 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPIFAWVIAIVIMLAGVLAI-----RSLPIAQYPMIAPPAV---------SITATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    +        +     +  ITL+F      +    +V   L  
Sbjct: 54  AKAVEDSVTQVIEQKMKGIDHLTYMSSTSDSSGSVTITLTFDAGTNPDIAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D ++  +         +++     +      I+    +     D +       
Sbjct: 114 ATPLLPEDVQRQGVQVAKASSNFLMVVGFISEDNSMSNIDLGDYVGSNIQDILSRVNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T A +S      N        G            
Sbjct: 174 DTQLFGS-KYAMRIWLDPAKLHNYSLTPADISAAITAQNAQVSAGQIGGMPASQGQALNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 +           
Sbjct: 233 TVTAQSRL-------------QTPEQFGDILLKSTTDGAAVRLRDVARVELGGESYDVVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T E      A L          ++          S   
Sbjct: 280 RYNGKPATGLAIKLATGANALDTAEAVKAKLAELEPLFPQGMKAVLPYDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+++ +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VVKTLIEAIVLVFIVMYVFLQNFRATLIPTIAVPVVLLGTFGVLAAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPKEATRRSMEQITGALIGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------------KKMKSIDI 525
           GG      R F+IT+  ++ +S+  A+ +  A+   +++             +     + 
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVLVALILTPALCATLLKPHRHGDTKRSLASRLFGGFNR 519

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L    +         +G+   ++  +  +            + +G +   V+ 
Sbjct: 520 GVERTTRLNQSLVRRMLNGLGRYGLVYGLIVLVMGVLFTLLPSSFLPDEDQGILFTQVIL 579

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                    ++ L+ ++   +  Q    +  F V      G           +K      
Sbjct: 580 PAGATTERTQAVLQQVERHFLQDQKEAVKSVFTVSGFSFGGSGQNNGLAFVSMKDWSERK 639

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            P   I            ++    +   I
Sbjct: 640 RPDLKISAVAGKAMGYFSQIREAMVFAFI 668



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D+  +        L        +++     ++    ++  + P 
Sbjct: 260 VRLRDVARVELGGESYDVVARYNGKPATGLAIKLATGANALDTAEAVKAKLAELEPLFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +I + + + I +++  + +   L     + + +  T
Sbjct: 320 GMKAVLPYDTTPFVKISIEEVVKTLIEAIVLVFIVMYVFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A  G   N   + A++  IG  V+D +VV + +     +    +S ++   +S+ +
Sbjct: 380 FGVLAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEATRRSMEQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 ITGALIGIALVLSAVFVPMAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 78/241 (32%), Gaps = 8/241 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + +       S      ++ +   E+   +      G         E +    +    L 
Sbjct: 793  NANGEMVPFSSFATAHWAYGSPRLERYNGLSSTEIMGSPAPGHSTGEAMAIMESLAAKLP 852

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                 E  G      +       +  +S + + + +   ++ W      +  + L +   
Sbjct: 853  PGIGYEWTGLSYQERMTGSQAPALYALSLLIVFLCLAALYESWSIPFAVMLVVPLGVVGA 912

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L   +L G+  ++     +L  IG S  + +++ +  ++ M          +   +++  
Sbjct: 913  LIAASLRGLSNDVYFQVGLLLTIGLSAKNAILIVEFAKEQM---EQGKEMVEATLEALRL 969

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 V TS+A  + VLP+AV    G     +    +  G++ A   ++       + + 
Sbjct: 970  RFRPIVMTSLAFILGVLPLAVSSGAGSGAQNALGTGVIGGMITATVLAVLFVPLFFVAVR 1029

Query: 825  D 825
             
Sbjct: 1030 R 1030


>gi|153824412|ref|ZP_01977079.1| protein-export membrane protein SecD [Vibrio cholerae MZO-2]
 gi|229522263|ref|ZP_04411679.1| protein-export membrane protein SecD [Vibrio cholerae TM 11079-80]
 gi|149741966|gb|EDM55995.1| protein-export membrane protein SecD [Vibrio cholerae MZO-2]
 gi|229340248|gb|EEO05254.1| protein-export membrane protein SecD [Vibrio cholerae TM 11079-80]
          Length = 612

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 151/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRT 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   S++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVSVQAMGND---AFEVRTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|292488979|ref|YP_003531866.1| putative HAE1 family transporter [Erwinia amylovora CFBP1430]
 gi|291554413|emb|CBA21871.1| putative HAE1 family transporter [Erwinia amylovora CFBP1430]
          Length = 1019

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/678 (11%), Positives = 185/678 (27%), Gaps = 51/678 (7%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +C  G L  +        ++++P   P              ++ +  +        L+  
Sbjct: 1   MCLTGGLAII-----SLPIEQYPDLAPP-------------NVRITANYPGASAETLENT 42

Query: 74  S-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
               +   +        +   S    Q  ++L+F      +    +V   LQ    KL  
Sbjct: 43  VTQVIEQNMTGLDNLMYMSSQSSHTGQATVSLTFEAGTNPDEARQQVQNQLQTALRKLPQ 102

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
           D +   +      + +I++             + S  +     D +       Q      
Sbjct: 103 DVQSQGVNVNKTGDTNILMVAFVSTDGSMDKQDISDYVASHLQDPLSRINGVGQVDAYGS 162

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
               +    DP++L     TT ++       N+       G     +       +  +  
Sbjct: 163 Q-YAMRIWLDPNKLINYALTTTEVIDAIKSQNSQVAVGQLGGLPSVERQALNATINAQSL 221

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +                 +                      +                  
Sbjct: 222 L-------------QTPQQFRAITLRVNADGSVVTLGQVAQVALGAEKYDYLSRYNGMPA 268

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
           +       +  +   T +        L           +          S      T   
Sbjct: 269 SGLGIKLASGANELQTDKLVRARLDELSRFFPQGLKAEIAFETSPFVQASIEDVVKTLFE 328

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              LV +V+++ +   +  L+   ++ + +  T  +L   G ++   ++  +VL IGL V
Sbjct: 329 AVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGTFGVLYAFGYSINTLTMFAMVLAIGLLV 388

Query: 429 DSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---A 484
           D  I+V E +      +  S   +      +    +    +      V + FFGG     
Sbjct: 389 DDAIVVVENVERIMTEEGLSPREATRKSMGQIQGALVGIALVLSAVFVPMAFFGGTTGAI 448

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLI 534
            R F++T+  ++++S+  AI +  A+   +           R       +          
Sbjct: 449 YRQFSVTIVSAMVLSVLVAIILTPALCSTLLKPLARGHHHGRRGFFGWFNHTFNRNAERY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +     +   W +    L ++ ++  +        ++ +G     V       L   
Sbjct: 509 KRSVGKMLAKGGRWLLVYLALIAVMALLYIRLPTSFLPLEDRGLFTTQVQLPPGSTLQQT 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + +E ++   ++ +  + +  F        G+     R+   +K     I   +T    
Sbjct: 569 MAVVEKVEHYYLTHEQNNVQSVFATVGAGPGGNGQNVARLFVRLKDWHDRIGGDNTSFAI 628

Query: 655 EIVGPKISRELIRKGIVG 672
                K  R +    +V 
Sbjct: 629 IERATKAFRRINEAKVVA 646



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 86/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + L        + +   +++     +++   P 
Sbjct: 242 VTLGQVAQVALGAEKYDYLSRYNGMPASGLGIKLASGANELQTDKLVRARLDELSRFFPQ 301

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +  + + + + +++  + +   L     + + +  T
Sbjct: 302 GLKAEIAFETSPFVQASIEDVVKTLFEAVLLVFLVMYLFLQNFRATLIPTIAVPVVLFGT 361

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N   + A++  IG  V+D +VV + +     +    +S R+   KS+ +
Sbjct: 362 FGVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLSPREATRKSMGQ 419

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F++ +   +V++   +I +   +
Sbjct: 420 IQGALVGIALVLSAVFVPMAFFGGTTGAIYRQFSVTIVSAMVLSVLVAIILTPAL 474



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 82/248 (33%), Gaps = 8/248 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S       +         +   E+          G++         +      +  L 
Sbjct: 773  NASGAMVPFTAFAHSHWENGSPRLERYDGYPALEIVGEAATGVSNGAAMDTMEQLVSQLP 832

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                 +  G  +   +       +  +S + + + +   ++ W      +  + L +   
Sbjct: 833  NGIGLQWTGASLQERMTGAQAPALYALSLLVVFLCLAALYESWSIPFSVMLVVPLGVLGA 892

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+E ++     +LT++G S  + +++ +   +   + +          ++  +
Sbjct: 893  LIATWLRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---INSRGSELVAATLEASRQ 949

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + TS+A    VLPMA+    G S   +    +  G++ A   +IF      +++ 
Sbjct: 950  RLRPILMTSLAFIFGVLPMAISQGAGSSSQHAVGTGVLGGMISATVLAIFFVPLFFVWVR 1009

Query: 825  DWRAKNAR 832
                   +
Sbjct: 1010 RRFPLKDK 1017


>gi|81301178|ref|YP_401386.1| hydrophobe/amphiphile efflux-1 HAE1 [Synechococcus elongatus PCC
           7942]
 gi|81170059|gb|ABB58399.1| Hydrophobe/amphiphile efflux-1 HAE1 [Synechococcus elongatus PCC
           7942]
          Length = 1056

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 88/673 (13%), Positives = 190/673 (28%), Gaps = 37/673 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I   GL+      LP   +++ P   P          +          
Sbjct: 11  KRPVLTTVCSILITLGGLV-----CLPILPIEQLPDIAPP---------QIQVSATYVGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + V   +    +   + ++       +    Q+ I + F  +R  +     V   +  
Sbjct: 57  DAETVENTVTSILENQINGVEGMEYITSTSAIGQSSIQVYFDPTRSPDLAQVDVNNLVSV 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  +  T      +     +       A   S  +       +   +   
Sbjct: 117 AIPQLPQAVQQQGIAVTQSSPSILQFYTFSSPTGEFDAQFISNYLSLYVQPALARVKGVG 176

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +   +    DP+RL     T   ++      N        G   +       +
Sbjct: 177 QANLFGNLEYSMRLWLDPNRLASYGLTAEDVASALQSQNQIIPVGQVGGPPVNSDQAYTF 236

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           ++     + G         F+         +                   +         
Sbjct: 237 IL----RLQGQGQLSTVEQFN-------NVVLKTGEDGTLVRVKDVGRAEEGAQSYSVTL 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +            A+L     P     +          S S 
Sbjct: 286 AADGRPGVGLGIYQLPGSNAIDVANGIREQLAILEQQFPPGLEGKLVFDVTDFVNASLSE 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  L+   +I ++++ TLA +   G ++ L ++ G+V
Sbjct: 346 VLITLVQAIALVILVIFIFLQDWRTTLIPAIAIPVSLVGTLAFIQAFGFSINLLTLFGLV 405

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I E+  + ++   +        +  +  +++      + + FF 
Sbjct: 406 LATGLVVDDAIVVVEAITEKIEEGKTPLQASIEAMDILFGAVIATSVVLFAVFIPVAFFP 465

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  +ILIS F A++   AM   +                     +  
Sbjct: 466 GATGRIYQQFALTLTFTILISTFNALTFSPAMSALL------LRPAKQQQGWLGKFFNLF 519

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              F R R   +G S   +I         GL        G          V        L
Sbjct: 520 NAGFDRVR---IGYSKALAIIDRLKFLVIGLFAAGLALTGWLFTTTPTGFVPTEDQGYFL 576

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
             +   + +  N+  +    ++   +   SV  T V+                 + +   
Sbjct: 577 GLIIGPEGAPLNYTQKVGQKIQSILETEPSVTSTAVISGFSFIGQGNNLGIYFASLKPWD 636

Query: 659 PKISRELIRKGIV 671
            + + +   + IV
Sbjct: 637 ERKAADQSAEAIV 649



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 79/202 (39%), Gaps = 9/202 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             L +++++    +    + +          E++   +  + +  + + I++     W  
Sbjct: 314 EQLAILEQQFPPGLEGKLVFDVTDFVNASLSEVLITLVQAIALVILVIFIFLQ---DWRT 370

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  TL F   FG   NL  +  ++   G  V+D +VV + + +      
Sbjct: 371 TLIPAIAIPVSLVGTLAFIQAFGFSINLLTLFGLVLATGLVVDDAIVVVEAITE---KIE 427

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAA 809
              +      ++++   G  + TS+  F   +P+A + G+       FA+ + F I+++ 
Sbjct: 428 EGKTPLQASIEAMDILFGAVIATSVVLFAVFIPVAFFPGATGRIYQQFALTLTFTILIST 487

Query: 810 SSSIFIAAPILLFIYDWRAKNA 831
            +++  +  +   +     +  
Sbjct: 488 FNALTFSPAMSALLLRPAKQQQ 509



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 56/140 (40%), Gaps = 6/140 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  + T+ L I   L F  L GI  ++ A   ++ LIG +  + +++ D   +      
Sbjct: 902  PLIILLTVPLAILGALVFLNLRGIPLDVYAQVGLVMLIGLASKNAILIVDYANE---AVA 958

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              + + +   ++        V T++++ I   P+ +    G +   S    +  G++VA 
Sbjct: 959  KGMGYTEAALEAAKLRFRPIVMTAISSLIGFFPLVIAQGAGAASRWSLGTVVFGGLLVAT 1018

Query: 810  SSSIFIAAPILLFIYDWRAK 829
              S+ I     + +     +
Sbjct: 1019 VLSLLIVPANYVILKSITRR 1038


>gi|37522408|ref|NP_925785.1| RND multidrug efflux transporter [Gloeobacter violaceus PCC 7421]
 gi|35213409|dbj|BAC90780.1| RND multidrug efflux transporter [Gloeobacter violaceus PCC 7421]
          Length = 1059

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/605 (12%), Positives = 158/605 (26%), Gaps = 42/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +    +I   G +           +D++P                   +V+   
Sbjct: 8   QRPILTIACSVIIVLGGWVSI-----RTLPVDQYPDIALP-------------QVVVTAR 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
            D      ++      L   +   E +   +     +    IT++F  +R  ++ A  + 
Sbjct: 50  YDGASAEVVESTVTTPLEQQINGAESMRYMTSTSSNDGTSTITVTFDLARNIDDAAMDIQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L  V  +L  + ++  +          V                S        D +  
Sbjct: 110 NRLTAVQGRLPEEVRRTGVTIRKNASQVTVAFGLYAKNNEYDNTFISNYADLYISDALRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    D  RL     +   +       N        G     D 
Sbjct: 170 VKGVGDVRIFGERRYSMRLWLDADRLAARRLSAVDVVRALETQNLQVGAGQVGQPPSLDG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V     +                 +    I                        
Sbjct: 230 QPYQISVRAVGRL-------------KSPAQFDNLILKRGADGALVRLKDVGRTELGAED 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                  T         S     +                    P     +   +     
Sbjct: 277 YTTFLRFTGRNAVGIAVSQLPGANTLDVYREVKAELDRQARAFPPGLEYEIAFDSASMVD 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V+F+ +   +  L+   +I ++++ T   + LLG ++   +
Sbjct: 337 ESIHEVVKTLIEAVVLVVAVMFIFLQDWRGTLIPAIAIPVSLVGTFIFVKLLGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYST-IFDSNITALIAT 474
           + GI L  GL VD  I+V E I      +  +V  +        +   I  S +   +  
Sbjct: 397 LFGITLAAGLVVDDAIVVVENIVRYSRERGLTVRAAAPEAMREVFGAVIATSLVLVAVFV 456

Query: 475 VVLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSR 530
            V FF G      + FA+T+  SI +S F A+++   +   ++R +  +    D      
Sbjct: 457 PVAFFPGTAGRLYQQFALTLTFSIALSTFIALTLTPTLSALLLRAEPPRHWLFDRINDLI 516

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            +L            RF    + +   +  +       +  G          V+  +  +
Sbjct: 517 DWLRRGYARSLGFALRFRSAMLGVFVCLLGLAWWLFGKVPPGFVPNEDQSYFVVFVQCPE 576

Query: 591 LSVVR 595
            S + 
Sbjct: 577 GSSLD 581



 Score = 89.0 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 75/204 (36%), Gaps = 8/204 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                L+   +     +      ++  +  +   E+++  I  V++    M I++     
Sbjct: 307 EVKAELDRQARAFPPGLEYEIAFDSASMVDESIHEVVKTLIEAVVLVVAVMFIFLQ---D 363

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T  F  L G   N   +  +    G  V+D +VV + + +  +
Sbjct: 364 WRGTLIPAIAIPVSLVGTFIFVKLLGFSINTLTLFGITLAAGLVVDDAIVVVENIVRYSR 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                ++ R    +++ E  G  + TS+      +P+A + G+       FA+ + F I 
Sbjct: 424 E--RGLTVRAAAPEAMREVFGAVIATSLVLVAVFVPVAFFPGTAGRLYQQFALTLTFSIA 481

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++   ++ +   +   +       
Sbjct: 482 LSTFIALTLTPTLSALLLRAEPPR 505



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 63/142 (44%), Gaps = 6/142 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  + ++ L I   LG  AL G+E ++     ++ LIG +  + +++ +      +L  
Sbjct: 893  PLVIMLSVPLAIVGALGAQALRGLENDIYCQIGLVMLIGLASKNAILIVEFAN---QLCK 949

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              ++    + K+    L   + TS A  + V+P+ +    G +   S    +  G++V+ 
Sbjct: 950  EGLTRIQAVSKAAQIRLRPILMTSFAFILGVVPLVMAEGAGAAGRQSLGTAVFGGMLVST 1009

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
            + S++I   + + I   R +  
Sbjct: 1010 ALSLYIVPVLYIVIGALRERFK 1031


>gi|332750155|gb|EGJ80566.1| inner membrane domain protein [Shigella flexneri 4343-70]
 gi|332997402|gb|EGK17018.1| inner membrane domain protein [Shigella flexneri K-218]
          Length = 694

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVIYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+ +S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMRLSVFVAMSLTPALCATI 496



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + I++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVIYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMRLSVFVAMSL 488


>gi|262158872|ref|ZP_06029985.1| protein-export membrane protein SecD [Vibrio cholerae INDRE 91/1]
 gi|262029445|gb|EEY48096.1| protein-export membrane protein SecD [Vibrio cholerae INDRE 91/1]
          Length = 507

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 150/513 (29%), Positives = 259/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 7   ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRA 66

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +    ++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 67  ERLRGVVVQAMGND---AFEVKTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 115

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 116 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 175

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 176 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 233

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 234 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 293

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 294 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 353

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 354 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 413

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 414 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 473

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 474 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 506



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 305 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 364

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 365 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 423

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 424 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 480

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 481 SMFSGVFASRALINLVWGRDTRR 503


>gi|260550401|ref|ZP_05824612.1| AdeB protein [Acinetobacter sp. RUH2624]
 gi|260406507|gb|EEW99988.1| AdeB protein [Acinetobacter sp. RUH2624]
          Length = 1036

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/634 (11%), Positives = 170/634 (26%), Gaps = 49/634 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL       P+  + RFPS  P               + +   
Sbjct: 8   RRPVFAWVIAIFIIIFGLLSI-----PKLPIARFPSVAPP-------------QVNISAV 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +IT +F      E     V 
Sbjct: 50  YPGATAKTINDSVVTLIERELSGVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQIVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G       
Sbjct: 170 VEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLPAEKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S +              +        +            N+      
Sbjct: 229 QLITIPLSAQGQLSSVE-------------QFKNISLKSKTNGSVIKLSDVANVEIGSQA 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          +         
Sbjct: 276 YNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPEGMEFSIPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 336 ISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  +   +         S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLNPKEATSKAMKEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSID 524
            + F  G      + F +TM +SIL S   A+ +  A+   I         +       D
Sbjct: 456 PMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFFAWFD 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           +           V   ++  I    + +        + +G       
Sbjct: 516 RSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFAGMKYWPTAFMPEEDQGWFMTSFQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                     R+ +   +       +       L
Sbjct: 576 LPSDATTERTRNVVNQFEYNLKDNPDVKSNTTIL 609



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 87/239 (36%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V     +    +++   +P 
Sbjct: 261 IKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 321 GMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  ++ ++   K
Sbjct: 378 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLNPKEATSK 434

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPMA   GSV      F + M+  I+ +A  ++ +   +
Sbjct: 435 AMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPAL 493



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 786  SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 845

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 846  GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 897

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 898  PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 954

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 955  TVAAAKLRLRPILMTSLAFTCGVIPLVIASGAS-SETQHALGTGVFGGMISATILA 1009


>gi|51245549|ref|YP_065433.1| acriflavine resistance protein B [Desulfotalea psychrophila LSv54]
 gi|50876586|emb|CAG36426.1| probable acriflavine resistance protein B [Desulfotalea
           psychrophila LSv54]
          Length = 1047

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/689 (10%), Positives = 173/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L  +        ++++P+  P               + +    
Sbjct: 8   RPVFAWVIALLIMLAGVLAII-----GMPVEQYPTIAPP-------------QVSISAFY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                  LQ      +   L       +     ++     IT++       +    +V  
Sbjct: 50  PGASAETLQNSVTQVIEQELTGIDNIRYFSSTSESAGMVTITVTLEPGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q    +L    +   +         + ++    +      I  +  I  Q  D I   
Sbjct: 110 KVQTAMPQLPQAVQSQGVTVEKSSTSYLFVTSFYSNNPDIDQIYLADLISSQISDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP ++     +T ++       N        G        
Sbjct: 170 SGVGTVTAFGDP-YAMRIWLDPQKMYSFQLSTNEVLTAISEQNIDVSAGQLGGLPAVQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I        +       ++       
Sbjct: 229 QINATVLAQSRL-------------KTVDEFEDIILRVNTDGSQVRLSDIASVELGAETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           S     +   T        A L                      
Sbjct: 276 GTIIKRMGKPCAAFGISLATGANALDTAARVKTKLAELAEYLPVGVEYSFPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++ T A+L + G T+   ++
Sbjct: 336 SIREVVKTLFEAIFLVFLVMFLFLQNFRATLIPTLAVPVVLLGTFAILHVCGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLSPKEATRKSMDQITGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FF G      R F+IT+  ++ +S+  A+ +   +                       
Sbjct: 456 MAFFSGSTGAIYRQFSITIVSAMTLSVLVALILTPTLCATFLKPVPKGHGEKTTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +                   R+  + +  ++L        +         + +G + +  
Sbjct: 516 NRTFNRARSGTKKASGYIAKRSFRFLIIYALLVVTLGFLFMKMPTGFLPDEDQGVLMVMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                       + ++ L     + Q  + E+   +      G           +K    
Sbjct: 576 STPAGASAQRTEAAMKQLDHYLQTEQTKNIEQYMTIVGFSFAGHGQNTALGFLNMKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 ++        +   E+    I  
Sbjct: 636 RKGKDQSVMAIANQIMRAMSEVKDAMIFA 664



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS + S     +      +                 +++     ++    ++ E +
Sbjct: 258 SQVRLSDIASVELGAETYGTIIKRMGKPCAAFGISLATGANALDTAARVKTKLAELAEYL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P+    +         +  IR+ +  +  +   + + +++  + +   L     + + + 
Sbjct: 318 PVGVEYSFPYDTTPFVKISIREVVKTLFEAIFLVFLVMFLFLQNFRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     + G   N   + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFAILHVCGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +PMA + GS       F+I +   + ++   ++ +   +
Sbjct: 436 DQITGALVGIALVLSAVFVPMAFFSGSTGAIYRQFSITIVSAMTLSVLVALILTPTL 492



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 82/269 (30%), Gaps = 11/269 (4%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                           +   + + V  +       +     +   N     N L       
Sbjct: 774  ITKSRMQPTDIEEWYVKNSSGKMVPFTAFTKTSWNYGSPRLERFNGYASINILGANAPGV 833

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                A T + EM KK    I    +  + E              +  + I  I  L    
Sbjct: 834  SSGEAMTEMEEMSKKLPEGIGYEWSGLSYEERASGSQAP----ALYAISI-LIVFLSLAA 888

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +   W      +  L L I   +   + FG++ ++    A+LT +G    + +++ +  +
Sbjct: 889  LYESWSIPFSVLFVLPLGIIGAVIATSAFGMDNDIYFQVALLTTLGLCAKNAILIVEFAK 948

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            +   LY    +  D    +        + TSMA  + VLP+A     G +   +  I + 
Sbjct: 949  E---LYEDGHTLMDAALTAFELRYRPIIMTSMAFILGVLPLATSSGAGAASQNAIGIAVI 1005

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G+  A   +IF      + +        
Sbjct: 1006 GGMFAATFLAIFFVPLFFVIVEKMSLSKK 1034


>gi|261822485|ref|YP_003260591.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pectobacterium wasabiae WPP163]
 gi|261606498|gb|ACX88984.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pectobacterium wasabiae WPP163]
          Length = 1042

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/574 (11%), Positives = 155/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  M+   GLL  +     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVLAIMVMLTGLLAIV-----KLPIAQYPTIAPPA-------------IDVTATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S      +ITL+F      +    +V  
Sbjct: 50  PGADASTLQDSVTQVIEQNMNGIDNLMYMSSSSDSSGTVQITLTFQAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVNVQKSSSSFLMVAAFISEDGKMSQEDIADYVAANVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +S    + NN       G        
Sbjct: 170 SGVGDAQLFGSQ-YAMRIWLDPNKLNNYQLTAGDVSAAIRVQNNQIAAGQLGGAPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 QLNASIIAQTRLNSAE-------------EFSKILLKVNADGSQVRLKDVARVELGAEGY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T                     +           
Sbjct: 276 DVIARFNGKPAAGIGIKLATGANALDTATAVKDALTKAEEFFPSGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F+IT+  ++++S+  A+ +  A+   +     +K I     S    
Sbjct: 456 MAFTGGSTGAIYRQFSITIVSAMVLSVLVALILTPALCATL-----LKPIAKGDHSEKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++              +   L  +
Sbjct: 511 FFGWFNKVFEKSTHHYTDSVANILRSTGRYLVIY 544



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +        +        +++     ++    K  E  
Sbjct: 258 SQVRLKDVARVELGAEGYDVIARFNGKPAAGIGIKLATGANALDTATAVKDALTKAEEFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA  GGS       F+I +   +V++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFTGGSTGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 65/183 (35%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +      +  L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMALMEEFVTKLPQGIGYQWTGMSYQERLSGNQAPAIYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L I   L    + G++ ++     +LT IG S  + +++ +  +  M     
Sbjct: 898  FSVMLVVPLGIIGALIAANMTGLQNDVYFKVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    ++   L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLDAVRMRLRPILMTSLAFILGVMPLVISSGAGSGAQNAVGTGVMGGMITATV 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|170734960|ref|YP_001774074.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia MC0-3]
 gi|169820998|gb|ACA95579.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia MC0-3]
          Length = 1062

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/688 (9%), Positives = 184/688 (26%), Gaps = 48/688 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G             + ++P+  P               + +   
Sbjct: 7   KRPILAWVMAIVIMLVGAAAV-----TSLPVAQYPTIAPP-------------SVQVTAT 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L        +   S    Q  ITL+F      +    +V 
Sbjct: 49  YPGASADTVAATVTQVIEQKLSGIDNVLYMSSTSSSAGQATITLTFNPGTNPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  +         +++   +      ++++    I  +  D +  
Sbjct: 109 NKVTQATPTLPQTVQEQGVQVAKASTSFLMIVALSSPGGTWNSVDLGNIIATRIEDPLAQ 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P +L     T + ++      N        G     DS
Sbjct: 169 LNGVGDVTLFGAQ-HAMRIWLNPVKLHSFGLTPSDVTTAITNQNVELSTGQVGGSPATDS 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     ++                +    +        R        +      
Sbjct: 228 QAINATIRSSSLLTTAD-------------QFASILLRVNSDGSRVLLKDVARVEVGGDS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L     +          +     +      A ++                    
Sbjct: 275 YDTSSRLNGKPASALAIKLATGANALDAADAVRAKLAEIQLQLPKDVAISYPYDTTPFVR 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+    + + ++ T  ++S++G ++ + S
Sbjct: 335 ISIEEVVKTLFEAVVLVFLVMYLFLQNVRATLIPTIVVPVALLGTFGVMSMIGFSINVLS 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     + +     +      +    +           +
Sbjct: 395 MFAMVLAIGLLVDDAIVVVENVERIMSEEKLGPKEATHKAMGQITGALVGVTTVLTAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FF G      R F+IT+  ++L+S+  A+++  A+   +++   ++  +      +F
Sbjct: 455 PMAFFAGSTGAIYRQFSITIVSAMLLSVMLALTLTPALCATLLKRADVEHHEKRGFFGWF 514

Query: 533 LIP-------DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        ++  + AR     +        + LL+    +  +  +      V  
Sbjct: 515 NRWFAKSNAGYSSSLARVVARPARYMLLYGAIAGVVALLYVTLPSSFLPDEDQGYFIVSI 574

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           + P      R+      +     ++  G K  +    +          +  +  K  +  
Sbjct: 575 SAPAGTPASRTLKTVEAVEQYVLKDEPGVKQVIAINGFSFNGQGQNNAIAFVTLKDWSLR 634

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +         +         I  +
Sbjct: 635 GSRDSASAIIARANQHFAGNRDARIFVL 662



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 84/244 (34%), Gaps = 6/244 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V          D S +      + L        +++     +     +I   +
Sbjct: 258 SRVLLKDVARVEVGGDSYDTSSRLNGKPASALAIKLATGANALDAADAVRAKLAEIQLQL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         R  I + +  +  + + + + +++  +     L     + + + 
Sbjct: 318 PKDVAISYPYDTTPFVRISIEEVVKTLFEAVVLVFLVMYLFLQNVRATLIPTIVVPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  ++ G   N+ ++ A++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFGVMSMIGFSINVLSMFAMVLAIGLLVDDAIVVVENV--ERIMSEEKLGPKEATHKAM 435

Query: 766 NETLGR--SVYTSMAAFISVLPMAVWGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G    V T + A    +         I   F+I +   ++++   ++ +   +   
Sbjct: 436 GQITGALVGVTTVLTAVFIPMAFFAGSTGAIYRQFSITIVSAMLLSVMLALTLTPALCAT 495

Query: 823 IYDW 826
           +   
Sbjct: 496 LLKR 499



 Score = 45.1 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++     +L  IG S  + +++ +  +    L     S  D + ++ +  L   + 
Sbjct: 933  GLSNDIYFKVGLLATIGLSTKNAILIVEFAKD---LQAQGHSLVDAVLEAAHMRLRPILM 989

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
            TS+A    VLP+ +    G     +    +  G++ A   +I
Sbjct: 990  TSLAFVFGVLPLVISTGAGAGARHAIGTGVTGGMIAATVLAI 1031


>gi|121604587|ref|YP_981916.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
 gi|120593556|gb|ABM36995.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
          Length = 1064

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/677 (11%), Positives = 188/677 (27%), Gaps = 47/677 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  +I  IG +        +  +  +P                   +     
Sbjct: 9   RRPVFATVLSLLIVLIGAVS-----FNRLTVREYPKIDEPVVT---------VSVRYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +    +     R  Q +I++ F   +  ++ A +V      
Sbjct: 55  SAEVIESQVTKPLEDSIAGIDGVDVITSISRADQGQISVRFRLEKDADSAAAEVRDRTSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++ ++         ++    + + +    ++ +  + R    ++       
Sbjct: 115 VRNRLPQAIEEPVIAKVEADAFPVIQLAFSSESLT--PLQINDLVNRIVKPRLQTVTGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  +L     TT  +       N          +    S  +Q 
Sbjct: 173 DVRIFGERKYAMRVWLDTDKLASYRLTTQDVEDAIRRSNLELPAGRIESQQREFSVTSQT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +   I +                      +            + +  A      
Sbjct: 233 DLLKPAQFGEIVIKT--------------------VNGFSVRVRDVARVEEGAADERTAV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +A  +          +   L+A   P  L  +   N      S   
Sbjct: 273 RLNGRPAVGVGVIRQATANPLDLSAGVRDVIPKLKADLPPDVLIDIANDNSVFIDRSVKN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   +I +++I T AL++L G T+   ++  +V
Sbjct: 333 VYRTIFEAVLLVALVIFVFLRTLRASIIPIITIPVSLIGTFALMALAGFTINTLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I     +    F +   G       I     T +     L F  
Sbjct: 393 LAIGLVVDDAIVMLENIFRHIEEGMDPFSAGIKGAREIGFAIITMTATLVAVYAPLAFTP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC- 537
           G   R    FA+ +  ++++S F A+++   +   ++++    +     + R        
Sbjct: 453 GRTGRLFVEFALALAGAVVVSGFVALTLTPMLCTQLLKHNPKPNRFDRTMERVLTSISER 512

Query: 538 -----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV--LANRPVD 590
                  I   R +      SI   I          +   +   G   + V     + + 
Sbjct: 513 YGALLRWIVTARFQPPAQDRSIGQRIKGFVFQARWIVVAVMLVSGVAIVLVFPTMKQELS 572

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               R  + +              +      +              +    + +   +  
Sbjct: 573 PMEDRGVILASVNAPDGSTLDYTNRYAQALEKMGQPFKEFDRIFANVGNPTVAQASVVYR 632

Query: 651 IQNTEIVGPKISRELIR 667
             + E+           
Sbjct: 633 TVDWEVRSRSTMDMARE 649



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 74/203 (36%), Gaps = 9/203 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            V+  +K  +   V +    +  +   +  + + R     V++ A+ + +++        
Sbjct: 301 DVIPKLKADLPPDVLIDIANDNSVFIDRSVKNVYRTIFEAVLLVALVIFVFL---RTLRA 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           ++  I T+ + +  T    AL G   N   + A++  IG  V+D +V+ + +    +   
Sbjct: 358 SIIPIITIPVSLIGTFALMALAGFTINTLTLLALVLAIGLVVDDAIVMLENI---FRHIE 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAA 809
             +       K   E     +  +        P+A   G        FA+ +A  +VV+ 
Sbjct: 415 EGMDPFSAGIKGAREIGFAIITMTATLVAVYAPLAFTPGRTGRLFVEFALALAGAVVVSG 474

Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832
             ++ +   +   +     K  R
Sbjct: 475 FVALTLTPMLCTQLLKHNPKPNR 497



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 668  KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            +G + ++     + I++ +      +   L  + ++ L +   L      G   N+ +  
Sbjct: 867  QGALAIVFVLALVFIFLVLAAQFESFVDPLVIMLSVPLSMIGALLALKWSGGSLNVYSQI 926

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++TL+G      +++ +      +L    +   D + K+ ++ L   + T+ A  +  L
Sbjct: 927  GLITLVGLITKHGILIVEF---TNQLRGQGMEMIDALVKASSQRLRPILMTTGAMVLGAL 983

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            P+A+    G          +  G+ +    ++F+   +      
Sbjct: 984  PLALAHGAGAESRIQIGWVIVGGMSLGTLLTVFVVPTMYALFAR 1027


>gi|294142070|ref|YP_003558048.1| protein-export membrane protein SecF [Shewanella violacea DSS12]
 gi|293328539|dbj|BAJ03270.1| protein-export membrane protein SecF [Shewanella violacea DSS12]
          Length = 315

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 144/274 (52%), Gaps = 2/274 (0%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R+    IS+   I S+ ++   G N+G+DF GG+   V  +  V    +   L     
Sbjct: 22  KLRYLTSLISLSLMILSLSVIAVKGFNWGLDFTGGVVTEVKLDSKVASKDISDLLSLASD 81

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            ++S  +      +++R              ++ +++ +  +     + N+ IVGP+I +
Sbjct: 82  QEVSVISAGEPGRWVLRYSLPSTQEDVSQHAMD-IEQVLQPLNSDVEVLNSSIVGPQIGQ 140

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + ++++ + ++ Y+  RF+W  A G++  L  D+   L FF+L   EFNLT +
Sbjct: 141 ELAEQGGLALLVAMLCIMAYLSYRFEWRLACGSLLALFHDVIFVLAFFSLTQTEFNLTVL 200

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AAVL ++GYS+ND +++ DR+R+ ++   + +   ++ D+++  T  R++ TS    ++V
Sbjct: 201 AAVLAILGYSLNDSIIIADRIREGLRT-ESGLPIAEINDRAVKATFSRTLVTSGTTLMTV 259

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           + + V GG  + SF+I M  GI+    SSI +  
Sbjct: 260 IALWVMGGGPLESFSIAMFIGILTGTWSSISVGT 293


>gi|281180552|dbj|BAI56882.1| multidrug transport protein [Escherichia coli SE15]
          Length = 1037

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIKISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPVEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|83950687|ref|ZP_00959420.1| Cation/multidrug efflux pump, RND family protein [Roseovarius
           nubinhibens ISM]
 gi|83838586|gb|EAP77882.1| Cation/multidrug efflux pump, RND family protein [Roseovarius
           nubinhibens ISM]
          Length = 1043

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/581 (12%), Positives = 168/581 (28%), Gaps = 33/581 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G+L  L        + ++P   P              + V     
Sbjct: 8   RPIFAWVISILLMGVGVLSIL-----ILPVAQYPEIAPPTVQ---------VNAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + VN  +    +E  + L     I   S       +TL+F      +    +V   L  
Sbjct: 54  AETVNNTVTQVIEEQMTGLDGLRYISSSSTSTGAANVTLTFETGTDADIAQVQVQNKLSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            ++ L    ++  +         +++           A++ S  ++   +D+    E   
Sbjct: 114 ASTLLPEQVQRQGVSVEKSSGGFLMVIALVSTDGRLEALDLSDYLVASMVDEFSRLEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T A +       N       FG     D      
Sbjct: 174 NVQVFGAQ-YAMRIWLDPEKLNAFELTPADVVQAVSEENAQVSAGSFGSLPAVDGQMLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +S                     +   E             +           
Sbjct: 233 TITAQSLLS-------------TPEDFEQIVIRAETDGGLVLVRDVARVEIGAESYATSA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T E        + A         +          S   
Sbjct: 280 HYNGAPTAGMAIQLATGANALDTSERVKEKLEDVSAFFPDGVEYRIPYDTTPFVEISIES 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T     GLV +V+ + +   +  L+   ++ + ++ T  +++L G T+   ++  +V
Sbjct: 340 VVHTLFEAIGLVFLVMLLFLQNLRATLIPTLAVPVVLLGTFGIMALFGFTINTLTMLAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +           + +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEDEGLGPYEATKKSMDQITGALVGIALVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + FAIT+  ++++S+  A+++  A+   ++R  +  + +      F    D 
Sbjct: 460 GGSTGVIYQQFAITVVSAMMLSVLVAVTLTPALCATMLRKPEHGAKERGIFGLFNRGFDK 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
           +   +     + +   +   I  + +       +     G 
Sbjct: 520 LTNGYAGTVGYVIKRPLRVGILYLMIGGLMAFLFVRTPTGF 560



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 5/146 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G  ALFG   N   + A++  IG  V+D +VV + +     
Sbjct: 362 LRATLIPTLAVPVVLLGTFGIMALFGFTINTLTMLAMVLAIGLLVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +   +   KS+++  G  V  ++      +PMA +GGS       FAI +   ++
Sbjct: 420 MEDEGLGPYEATKKSMDQITGALVGIALVLSAVFIPMAFFGGSTGVIYQQFAITVVSAMM 479

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           ++   ++ +   +   +       A+
Sbjct: 480 LSVLVAVTLTPALCATMLRKPEHGAK 505



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 10/148 (6%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             +S  A+ + +   ++ W   +  +  + + IT  L    L   E  +    A+LT+IG 
Sbjct: 874  ALSLAAVFLCLAALYESWSIPVAVMLAMPIGITGALIAAWLGSFENGVYLQVALLTVIGL 933

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            +  + +++ +  R+              + ++  +     + TSMA  + VLP+ +  G+
Sbjct: 934  TGKNAILIVEFARE---RMDAGAPLYSGVTEAAKQRFRPILMTSMAFSLGVLPLVLSSGA 990

Query: 793  VIGSFAIPMAFGIVVAASSS-----IFI 815
                    +  G++    SS     IF+
Sbjct: 991  G-SGGRTAIGSGVLGGTVSSTMLGVIFV 1017


>gi|160898809|ref|YP_001564391.1| hydrophobe/amphiphile efflux-1 family protein [Delftia acidovorans
           SPH-1]
 gi|160364393|gb|ABX36006.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Delftia
           acidovorans SPH-1]
          Length = 1065

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/607 (12%), Positives = 169/607 (27%), Gaps = 47/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           L+++P   P               + +    
Sbjct: 8   RPIFAWVIAIVIMLGGALSIF-----TLPLEQYPDIAPP-------------RVTIGAQY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   LK    +   S     +   + TL+FA     +    +V  
Sbjct: 50  TGASAETVENSVTQIIEQQLKGIDNMLYMSSTSDASGRARTTLTFAPGTNIDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   ++L    K   +      +  +V            A++    +    +D IG  
Sbjct: 110 KLQSAVNRLPDAVKSRGVFVNKGGQDFLVTYSFFSKDPAMTAVDIGDYLTSNLVDVIGRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP+++ +     + +       N        G        
Sbjct: 170 DGVGDVNVFGT-NYAMRIWMDPAKMEKYALMPSDLVNALNSQNAQVSAGQLGALPAVSDQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +    +    +            +      +
Sbjct: 229 QLNATITARTKL-------------KTVEQFEDIVLKSSLDGSVVLMKDVARVELGADNL 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +T     A L+          V   +      
Sbjct: 276 TIKAKLNGLPGAGMGIVLADGANAMQVADTIAAKLAELKPFFPNEIDYFVSSDSTPFVRA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S             LV+IV+F+ +   +  ++   ++ + ++ T  +LSL G ++   ++
Sbjct: 336 SIKEVVSALGEAMILVVIVMFIFLQNFRATMIPAIAVPVVLLGTFGVLSLAGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +    S   +           +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHETGMSPKQATRQSMREITPALVGIGVTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINP 527
           + FFGG      R F+IT+  ++ +S+F A+++  A+   +++          + I    
Sbjct: 456 MAFFGGSTGVIYRQFSITIVAAMALSVFVALTLTPALCATLLKPPAAGGAGHDRPIRSGI 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           L             F        G        +  ++       G+ +    +L      
Sbjct: 516 LGVNDRFFRWFNHHFDATAARYQGTVAYSLRRAKRMMLIFLAVCGVVWLLMARLPTSFLP 575

Query: 588 PVDLSVV 594
             D   V
Sbjct: 576 DEDQGFV 582



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V           I  +        +  +     +++     +     ++    P     
Sbjct: 264 DVARVELGADNLTIKAKLNGLPGAGMGIVLADGANAMQVADTIAAKLAELKPFFPNEIDY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     R  I++ +  +  + I ++I ++I  + +   +     + + +  T G  
Sbjct: 324 FVSSDSTPFVRASIKEVVSALGEAMILVVIVMFIFLQNFRATMIPAIAVPVVLLGTFGVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   N   + A++  IG  V+D +VV + +     ++ T +S +    +S+ E    
Sbjct: 384 SLAGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHETGMSPKQATRQSMREITPA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V   +      +PMA +GGS       F+I +   + ++   ++ +   +   +  
Sbjct: 442 LVGIGVTLSAVFVPMAFFGGSTGVIYRQFSITIVAAMALSVFVALTLTPALCATLLK 498



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 78/759 (10%), Positives = 199/759 (26%), Gaps = 34/759 (4%)

Query: 100  LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE--KEISIVLSQNNIDQVIS 157
            +  AD      +AD +   L  +      +    +   +T   +     +     + +I 
Sbjct: 291  IVLADGANAMQVADTIAAKLAELKPFFPNEIDYFVSSDSTPFVRASIKEVVSALGEAMIL 350

Query: 158  HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
              I   + +   R   I      +  LG+  +L       +   +  ++     +    +
Sbjct: 351  VVIVMFIFLQNFRATMIPAIAVPVVLLGTFGVLSLAGYSINTLTMFAMVLAIGLLVDDAI 410

Query: 218  LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
            +   + +  M            Q + E    + GI +  +              + + + 
Sbjct: 411  VVVENVERVMHETGMSPKQATRQSMREITPALVGIGVTLSAVFVPMAFFGGSTGVIYRQF 470

Query: 278  GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
                   +                 L  P         +   SG   +            
Sbjct: 471  SITIVAAMALSVFVALTLTPALCATLLKPPAAGGAGHDRPIRSGILGVNDRFFRWFNHHF 530

Query: 338  GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV----LYGKWGLVADFS 393
             +   +       ++        I+   C +V  L+  +    +        +  +   S
Sbjct: 531  DATAARYQGTVAYSLRRAKRMMLIFLAVCGVVWLLMARLPTSFLPDEDQGFVFVNINLPS 590

Query: 394  IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
               +  L   L  +       P +       GL  D          +   +      S  
Sbjct: 591  GAADTRLQGVLDEVRDYFAKQPDVVSFYQVSGLNGDQASARAFVRLKTWEERPLPGQSAS 650

Query: 454  MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
                RA   +       ++  +     G G+  GF   +     +     +      +  
Sbjct: 651  EIAHRATKDLSSIRDARVLVVLPPAVRGLGSSSGFNFMIKDMNGLGHQVLLEAKEKFLTE 710

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH------ 567
              +  ++ ++ +  L     +   I  +   A              ++   + +      
Sbjct: 711  ARKRPELTNLRMTNLEDASELRLDIDDRKAAALGLSYTDINSVLSSAMGGTYVNDFLNNE 770

Query: 568  -----------GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                                    +       V  S   S+  +     +   N +    
Sbjct: 771  RVKRVYIQGDAPHRMLPQDIAKWTVRNAKGEMVPFSSFSSSYWAYGSPQLMRYNGNPAYE 830

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R         A   V ++++     I    T  + +         L+    + ++  
Sbjct: 831  MEGRAASGVSSGTAMQIVEDILRTLPAGIGYEWTGASLQERQSGAQAPLLYA--ISILFV 888

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             + +     +   W   L  +  + L +   L      G+  ++     +LT +G +  +
Sbjct: 889  FLCLA---ALYESWTVPLSVMLAVPLGVVGALAATYTRGLTNDVYFQVGLLTTVGLASKN 945

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSV 793
             +++ +     ++L     S  D +  ++   L   + TS+A    V+P+      G   
Sbjct: 946  AILIVEFA---VQLQEQGKSIFDAVVSAVRLRLRPILMTSLAFGFGVIPLAIGTGAGAGG 1002

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +    +  G++ +    IF+     L I  W   ++R
Sbjct: 1003 RNAIGTAVLGGMLASTVLGIFLVPVFFLLIRSWFKSHSR 1041


>gi|188583932|ref|YP_001927377.1| protein-export hypothetical protein SecF [Methylobacterium populi
           BJ001]
 gi|179347430|gb|ACB82842.1| protein-export membrane protein SecF [Methylobacterium populi
           BJ001]
          Length = 314

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/301 (36%), Positives = 175/301 (58%), Gaps = 7/301 (2%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN- 586
           +    L PD     FMR R     +S + S+ ++ L  T GLNYGIDFKGG  + + A  
Sbjct: 1   MRLLRLWPDESHFDFMRFRRVTFPLSAVLSVVTLVLFITVGLNYGIDFKGGTLVELQAKP 60

Query: 587 -RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            R  D++ +R        G+   Q   GE   LVR   Q G+         +++K     
Sbjct: 61  GRTADVAEIRHTANGFGFGETEVQELGGEGQVLVRFPLQAGEQGQTA----VMQKAHAAF 116

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 + TE VGP++S EL++ G +GV++S +A+L+Y+W RF+   ALGAI   + DI 
Sbjct: 117 DAGYDFRRTETVGPRVSGELVQSGTIGVVLSVLAVLLYLWFRFERELALGAIVGTLHDIV 176

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T+G F +  IEFN+T++AA+LT++GYS+N+ VVV+DR R+ M+ Y  +I   +L++ SI
Sbjct: 177 LTVGVFIVTRIEFNMTSIAAILTIVGYSLNETVVVFDRTRELMRRY-KTIPVVELLNLSI 235

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           N T+ R+V TS++  +S++ + ++GG  I  FA+ M  G+V+   S+IF++ P L++I  
Sbjct: 236 NSTMSRTVMTSLSTTLSLVALVLFGGEAIKGFAVVMLCGVVICTYSAIFVSTPALIYIGL 295

Query: 826 W 826
            
Sbjct: 296 R 296


>gi|51893580|ref|YP_076271.1| protein translocase subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51857269|dbj|BAD41427.1| Protein translocase subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 308

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 142/291 (48%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I++MR     +  +++  + +   L   GLN GIDF GG+ L +   R V +  VR+ 
Sbjct: 4   TRIRYMRYARHYLIFTLVTVLLAAGALLFRGLNLGIDFTGGLLLDLQFERTVTIEQVRTV 63

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           ++S    D   Q  + +             +   +   +         +   T+   + V
Sbjct: 64  IDSALGIDAQIQQVEPKGAASPEATEFLVRTPELSAEDKDRLYGSLLHLGAYTVIGEDAV 123

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
              +S EL  K ++ V I+A+  +IYI IRF++   + A+  L+ D+  T+G  ALF +E
Sbjct: 124 SGTVSSELTNKALLAVGIAAVLQVIYISIRFQFRMGVAAVVALLHDVLLTMGVLALFQVE 183

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            +   VAA+LT++GYS+ND VVV DR+R+N+       S  ++  +SI E + RS+YT +
Sbjct: 184 ISSNFVAAILTVLGYSMNDTVVVLDRLRENLHSRQKGESLEEMATRSIQEVITRSIYTGV 243

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  + +L M   GGS +   A  +  GI+    SSI +AA +       R 
Sbjct: 244 SVQLMLLAMIFLGGSTVLDLASTLFVGILAGTYSSITVAAALWFVWEQSRE 294


>gi|161523869|ref|YP_001578881.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           multivorans ATCC 17616]
 gi|189351370|ref|YP_001946998.1| HAE1 familyhydrophobic/amphiphilic exporter-1 [Burkholderia
           multivorans ATCC 17616]
 gi|160341298|gb|ABX14384.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia multivorans ATCC 17616]
 gi|189335392|dbj|BAG44462.1| HAE1 familyhydrophobic/amphiphilic exporter-1 [Burkholderia
           multivorans ATCC 17616]
          Length = 1066

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 155/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   +         S     +    ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGTATITLTFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLKVTKSSSSFLLVLAFNSEDGSMNRYDLANYVASHVQDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   ++      N    G   G    +   
Sbjct: 170 NGVGTVTLFGSQ-YAMRVWLDPVKLTNYGLTPIDVTNAISAQNVQVAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 LLQATITEATLL-------------RTPAEFGNILLKVNQDGSQVRLKDVAQIGLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPSAALGIQLATNANALATAKAVRAKVDELSKYFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++SL+G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSLVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLGPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNASRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++++  
Sbjct: 258 SQVRLKDVAQIGLGAENYNFDTKYNGQPSAALGIQLATNANALATAKAVRAKVDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +L G   N  ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAIMSLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLGPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 78/219 (35%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q                  +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMAAMEALATKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 61/522 (11%), Positives = 136/522 (26%), Gaps = 38/522 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANITDYLLKDEKDIVESAFTVNGFSFAGRGQNSGLVFVRLKDYAQRQHADQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  +++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-SGYKDAIVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLQGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDLNIWYVRNGSGGMVPFGAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A          A    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMAAMEALATKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVL 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             L      G  +       +   ++ + F AI ++    + I
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028


>gi|315123336|ref|YP_004065342.1| RND family multidrug efflux protein [Pseudoalteromonas sp. SM9913]
 gi|315017096|gb|ADT70433.1| RND family multidrug efflux protein [Pseudoalteromonas sp. SM9913]
          Length = 1043

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/690 (9%), Positives = 176/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G++           + ++PS  P               + +  + 
Sbjct: 8   RPIFAWVLAIVVMLAGIIAV-----KSLPVAQYPSIAPPA-------------ITITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +K       +   S       +TL+F      +    +V  
Sbjct: 50  PGASARTLEDSVTQVIEQKMKGLDGLLYMSSTSESSGSATLTLTFDAETNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +V        +++            I+    +     D +   
Sbjct: 110 KLATATPLLPEEVQRQGVVVAKSSSSFLLVVGFVSQDGSMTNIDIGDYVSSNVQDIVARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L+    T   +S      N        G        
Sbjct: 170 DGVGEVQLFGSQ-YAMRIWLDPAKLQSYKLTPNDISAAIKAQNAQVSAGQLGGMPSLAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    +                ++       
Sbjct: 229 QLNATVTAQSRL-------------QTPEQFKDILVKTNSDGSVVRLQDVADVELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L+         +V          
Sbjct: 276 GVVARFNGKPASGLGVKLASGANALDTAQGVKDALEELKPFFPEGLEAVVPYDTTPFVAL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T  +L   G ++   ++
Sbjct: 336 SIEKVVHTLIEAVVLVFVVMYLFLQNFRATIIPTIAVPVVLLGTFGILFTFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERLMTEEKLSAVEATRKSMDEIKGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + FF G      R F+IT+  ++ +S+  A+ +  A+   +              +    
Sbjct: 456 MAFFSGSTGVIYRQFSITLVSAMGLSVLVALILTPALCATLLKPSHVHTDGSFIGRFFSG 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +             +      ++ + +  +++                  + +G +   
Sbjct: 516 FNRGFDKTNKGAQGFVGRMIKHSKRYLLSYALIVGGMVAIFSNLPTAFLPDEDQGILFNQ 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+             ++ ++   +  Q+      F V      G           +K   
Sbjct: 576 VMLPAGSTTEQTLEVVKKVENHYLEDQSEAVSSIFTVTGFSFAGSGQNSAIGFVSLKHWD 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                  ++      G      +    +  
Sbjct: 636 ERQRDDLSVGAVAGKGMGYFSTIKEAFVFA 665



 Score = 71.3 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   +  +      + L        +++   + ++   +++    P 
Sbjct: 260 VRLQDVADVELGGENYGVVARFNGKPASGLGVKLASGANALDTAQGVKDALEELKPFFPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I K +  +I + + + + +++  + +   +     + + +  T
Sbjct: 320 GLEAVVPYDTTPFVALSIEKVVHTLIEAVVLVFVVMYLFLQNFRATIIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N   + A++  IG  V+D +VV + +     +    +S  +   KS++E
Sbjct: 380 FGILFTFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERLMTEEKLSAVEATRKSMDE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA + GS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IKGALVGIAMVLSAVFIPMAFFSGSTGVIYRQFSITLVSAMGLSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 81/263 (30%), Gaps = 18/263 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +       V  S   S+  S     +   N                   
Sbjct: 779  RMVPEDLNKWYVRNKNGDMVPFSAFASSYWSYGSPRLERYNGFSAMEIQGSAAPGYSTGQ 838

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +VK+    I    T  + +         L+        +S + + + +   ++
Sbjct: 839  AMDEMERLVKQLPQGIASEWTGISYQERSSGGQAPLLY------GLSLLFVFLCLAALYE 892

Query: 690  ---WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                 FA+  I  L +       F      +  L     +LT IG +  + +++ +    
Sbjct: 893  SWSVPFAVMMIVPLGIFGAIVAAFMGNLSNDIYLQV--GLLTTIGLASKNAILIVEFA-- 948

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
             +      +S  D    ++   L   + TSMA    VLP+A+    G     +  I +  
Sbjct: 949  -IHKMEEGLSLVDSAIAAVRLRLRPILMTSMAFVCGVLPLAIASSAGSGAQNALGISIIG 1007

Query: 804  GIVVAASSSIFIAAPILLFIYDW 826
            G + A+ S + I  P+   +   
Sbjct: 1008 GTLAAS-SLVVIFVPLFFVLVRR 1029


>gi|255321488|ref|ZP_05362646.1| protein-export membrane protein SecD [Campylobacter showae RM3277]
 gi|255301344|gb|EET80603.1| protein-export membrane protein SecD [Campylobacter showae RM3277]
          Length = 526

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 182/547 (33%), Positives = 295/547 (53%), Gaps = 37/547 (6%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN    + +I++++   +G++ + P+F  +             +ISLGLDL+GG H++L
Sbjct: 1   MRNGKITYRLIIFALALILGIIFSAPSFTDKLGGS---------KISLGLDLQGGLHMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            V+ ++ V+  ++  +  +  F KKE + + S +  ++K+     D+     I   +   
Sbjct: 52  GVETEEAVHSKIKSIAASVNYFAKKEDVLIDSFKIREDKVDFELLDADEAAKIDGMLKDI 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                        K L V     + SI L+     + I +AI Q++E IR R+DQ G++E
Sbjct: 112 -------------KGLNVQKDGLKYSIGLTDAEKAETIEYAINQAVETIRNRLDQFGLAE 158

Query: 179 STIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            T+ R G   IL++LPG +   D  R R L+   A +    V      +           
Sbjct: 159 PTVARQGKDNILVELPGIKTAADEQRARDLIAKAAHLQLMAVDEKRQSQANSMSEAEAES 218

Query: 236 ----------SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     ++  +Y+V++   + G  L  A   FD +T+ P++  + +  GAR F + 
Sbjct: 219 YGDIIYPDVKNEQIKYVVKNIPVLDGAMLTDARVAFDQRTNSPIISFTLNAEGARIFGDF 278

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           T  N+GK LA+VLDGRV +AP IN+ I  G  QISG F++E A  +A  LR+G+L   + 
Sbjct: 279 TGANVGKRLAIVLDGRVYSAPSINERIGGGSGQISGGFSVEEAHDVAIALRSGALLAPVK 338

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           ++E+R+VG  LG+DSI +   A+ +  VL+VLFMI  YG  G++A+ ++  N+++ +A++
Sbjct: 339 MLEKRSVGPSLGADSIRQSMIALASASVLVVLFMIAYYGFSGILANIALVANILILVAVM 398

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           ++ GA LTLP +AGIVL IG+AVD+N+++NERIRE  R   S+  S+  G+  A S I D
Sbjct: 399 AMFGAALTLPGMAGIVLTIGMAVDANVIINERIRELLRDGASIATSVKKGYENAMSAIID 458

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +N+T LI +VVL+ +G G V+GFA+TMG+ I+ SM TAI     M   II   +      
Sbjct: 459 ANLTTLITSVVLYAYGTGPVKGFAVTMGIGIIASMITAILGTHGMFDTIINKIEKSGNTR 518

Query: 526 NPLSRFF 532
                  
Sbjct: 519 FWFGYKR 525



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 77/158 (48%), Gaps = 4/158 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + IR+ ++ +  +++ +++++   + +   + A   L+ +I   +   A+FG
Sbjct: 344 SVGPSLGADSIRQSMIALASASVLVVLFMIAYYGFS-GILANIALVANILILVAVMAMFG 402

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++ +R+R+ ++      S    + K     +   +  
Sbjct: 403 AALTLPGMAGIVLTIGMAVDANVIINERIRELLRD---GASIATSVKKGYENAMSAIIDA 459

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
           ++   I+ + +  +G   +  FA+ M  GI+ +  ++I
Sbjct: 460 NLTTLITSVVLYAYGTGPVKGFAVTMGIGIIASMITAI 497


>gi|110807776|ref|YP_691296.1| putative transport system permease [Shigella flexneri 5 str. 8401]
 gi|110617324|gb|ABF05991.1| putative transport system permease protein [Shigella flexneri 5
           str. 8401]
          Length = 1037

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGASPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVIYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+ +S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMRLSVFVAMSLTPALCATI 496



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + I++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVIYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMRLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|109900502|ref|YP_663757.1| preprotein translocase subunit SecF [Pseudoalteromonas atlantica
           T6c]
 gi|109702783|gb|ABG42703.1| protein-export membrane protein SecF [Pseudoalteromonas atlantica
           T6c]
          Length = 328

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/289 (29%), Positives = 147/289 (50%), Gaps = 5/289 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 F + R  G  ++I   + S   L   GLN G+DF GG       ++ ++   ++
Sbjct: 26  HSPMAMFSKVRLAGFYLAISLMLLSAIGLGFKGLNLGLDFTGGYMTEFTTSQSINKKQMQ 85

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L +   GD    +      + +R      D        + +     +     + Q++ 
Sbjct: 86  DQLATHLTGDFELNSSGANTQWTIRQ----ADGANHVIDKDWLNNFAAQSGYDISPQDSV 141

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G ++  ELI  G + +I++AIAM+IY+  RF+W  A G++  L+ D+   LG FA  G
Sbjct: 142 YIGSQVGSELIDNGGLALIVAAIAMMIYLTWRFEWRLACGSLMALVHDVLVVLGLFAWLG 201

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           + F+LT +AAVL +IGYS+ND +V+ D++R+ M+   T++S  D++D ++  TL RS+ T
Sbjct: 202 LPFDLTVLAAVLAIIGYSLNDSIVIGDKLREVMRA-KTNMSMSDIVDTAVKSTLTRSLIT 260

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           S     ++  + ++GG  +  FAI +  G+V    SSI ++A I   I 
Sbjct: 261 SGTTLATIGAIWIFGGQPLQGFAIGLFAGVVFGTLSSIAVSATIPQLIG 309


>gi|39997790|ref|NP_953741.1| AcrB/AcrD/AcrF family protein [Geobacter sulfurreducens PCA]
 gi|39984682|gb|AAR36068.1| AcrB/AcrD/AcrF family protein [Geobacter sulfurreducens PCA]
          Length = 1052

 Score =  189 bits (479), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/693 (11%), Positives = 172/693 (24%), Gaps = 55/693 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  M+   GLL           + ++P   P               + +    
Sbjct: 8   RPIFAWVISIMVMLGGLLAI-----KTLPVSQYPPIAPP-------------QITINAMY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +Q      +   L     +   S          I L+F           +V  
Sbjct: 50  PGASAQTVQDTVTQVIEQKLNGIDNLIYMSSTSDSAGAVAINLTFKAGTDPNIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +      +  +++     +         +  ++    D I  +
Sbjct: 110 KLQLATPLLPQIVQRQGIQVVKSTKNFLMIVGLVSEDGSLTRDTLTDYLVSNVQDIISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP++L     TT  +       N       FG        
Sbjct: 170 EGVGEVTVFGSQ-NAMRIWLDPAKLNNFHLTTNDVIAAIQAQNAQVSAGQFGGSPAVHGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                         
Sbjct: 229 QLNATITARTLL-------------QTPEQFNNIILRTNPDGSTVKLKDVAEAKVGTENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +        A  +   T E        L          +           
Sbjct: 276 DIEARYKGKPLGGMAIRLAAGANALDTGERVKAKMEELSRYFPAGMKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV I++F+ +   +  L+   ++ + ++ T+ +L+  G ++   ++
Sbjct: 336 SIKEVVKTLVEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGTMGVLAAAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +V+ IGL VD  I+V E +      +  S   +      +  S ++          + 
Sbjct: 396 FALVIVIGLLVDDAIVVVENVERIMSEEGLSPHDATIKSMGQITSALWGIATVLSAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519
           + FFGG      R F+IT+  ++++S+  A  +  A+   +                 + 
Sbjct: 456 MAFFGGSTGVIYRQFSITIISAMILSVLVAQILTPALCSTLLKPVEKGHTPGECGWFCQF 515

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            +  +             +   F +   + V    + ++     L         + +G I
Sbjct: 516 FRHFNKGFDWAREKYEGIVGRSFGKPVRYLVVYGGIVAVMVFFFLRLPTAFLPDEDQGFI 575

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              V              +E L+   +  +    E    V      G           +K
Sbjct: 576 ICQVQLPAGATKERTIKVIEELEHHFLEREKKTVEAIITVAGFSFAGRGQNMGLAFVKLK 635

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                  P                ++       
Sbjct: 636 DWELRPTPDLKAPAVAGRAMAAFSKIKDGMAFA 668



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 86/236 (36%), Gaps = 8/236 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  DI  +        +        +++     ++   ++++   P 
Sbjct: 260 VKLKDVAEAKVGTENYDIEARYKGKPLGGMAIRLAAGANALDTGERVKAKMEELSRYFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  ++ +   + I +++  +     L     + + +  T
Sbjct: 320 GMKVVYPYDTTPFVKISIKEVVKTLVEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  A  G   N   + A++ +IG  V+D +VV + +     +    +S  D   KS+ +
Sbjct: 380 MGVLAAAGFSINTLTMFALVIVIGLLVDDAIVVVENV--ERIMSEEGLSPHDATIKSMGQ 437

Query: 768 TLGRSVYTSMAAF-ISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
                ++          LPMA +GGS       F+I +   ++++   +  +   +
Sbjct: 438 ITSA-LWGIATVLSAVFLPMAFFGGSTGVIYRQFSITIISAMILSVLVAQILTPAL 492



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 78/252 (30%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N    +          Q G    + ++G  +  +  Q  PG S  +           
Sbjct: 793  VRNNNGEMVPFSAFATAHWQYGSPRLERYNGIPSVEIMGQAAPGVSTGEAMAEMEKMAAQ 852

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                             +   +      + +++  +A+     +   W      +  L L
Sbjct: 853  LPAGIGYEWTGLSYEEKQAGAQAPALYAISLLVVFLAVA---ALYESWTIPFVNLLMLPL 909

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    L  +  ++     +LT +G S  + +++   +++ +          +   
Sbjct: 910  GLVGAVTAVTLRMLPNDVYLQIGLLTTVGLSTKNAILIIQFIKEQLH---HGHDLVEATL 966

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             ++   L   + TS+A F   LP+A+    G +   +    +  G++ A    +      
Sbjct: 967  LAVKIRLRPVIMTSLAFFFGTLPLALTKGAGAAAQNAIGTAVTGGLLSATFIDLIFIPFF 1026

Query: 820  LLFIYDWRAKNA 831
             + +    AK  
Sbjct: 1027 FVMVSKLFAKKQ 1038


>gi|264678831|ref|YP_003278738.1| transporter hydrophobe/amphiphile efflux-1 [Comamonas testosteroni
           CNB-2]
 gi|262209344|gb|ACY33442.1| transporter, hydrophobe/amphiphile efflux-1 [Comamonas testosteroni
           CNB-2]
          Length = 1055

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/582 (13%), Positives = 167/582 (28%), Gaps = 42/582 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           L+++P   P               + +    
Sbjct: 8   RPIFAWVIAIVIMLAGALSI-----KLLPLEQYPEIAPP-------------RVTIGAQY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S    Q +ITL+FA     +    +V  
Sbjct: 50  TGASAETVENSVTQIIEQQIKGIDNMLYMSSTSNASGQARITLTFAPGTNVDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +QG  ++L    K   +      +  +V            A++    I    +D IG  
Sbjct: 110 KIQGAVNRLPDSVKTRGVFINKGGQDFLVTYSFYSPDEDVTAVDIGDYINSNLVDIIGRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP+++ +     + +S      N        G      + 
Sbjct: 170 EGVGDINVFGTP-YAMRIWMDPAKMEKYGLIPSDLSSALNAQNAQVSAGQLGALPAVQNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +    +                 +      +
Sbjct: 229 QLNATITARTKL-------------KTVEQFEDIVLKSSNDGSVVTIKDVARVELGADNL 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L+          V   +      
Sbjct: 276 SIQAKLNGMPGAGMGIILADGANAMAVSDAVAAKLAELKPFFPNQIDYFVSSDSTPFVRA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S           LV+IV+F+ +   +  L+   ++ + ++ T  +LS+ G ++   ++
Sbjct: 336 SISEVVHALGEAMVLVVIVMFVFLQNFRATLIPAIAVPVVLLGTFGVLSVAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +   +S   +           +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHETGKSPKEATRQSMKEITPALVGIGVTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+F A+++  A+   +      +S           
Sbjct: 456 MAFFGGSTGVIYRQFSITIVAAMALSVFVALTLTPALCATL-LKAPDRSHGDGHERPIRS 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
               I  +F R        +      ++           + F
Sbjct: 515 GVLGINDRFFRWFNRNFDAAANRYQSTVAFSLGRAKRMMLIF 556



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V           I  +        +  +     +++A +  +     ++    P 
Sbjct: 260 VTIKDVARVELGADNLSIQAKLNGMPGAGMGIILADGANAMAVSDAVAAKLAELKPFFPN 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I + +  +  + + ++I +++  + +   L     + + +  T
Sbjct: 320 QIDYFVSSDSTPFVRASISEVVHALGEAMVLVVIVMFVFLQNFRATLIPAIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ++ G   N   + A++  IG  V+D +VV + +     ++ T  S ++   +S+ E
Sbjct: 380 FGVLSVAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHETGKSPKEATRQSMKE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V   +      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 ITPALVGIGVTLSAVFVPMAFFGGSTGVIYRQFSITIVAAMALSVFVALTLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 79/263 (30%), Gaps = 9/263 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      +  V  N+   +     +      G      ++G   +    +   G S    
Sbjct: 786  MLPTDIAKWTVRNNKGEMVPFGAFSKSYWAYGSPQLLRYNGSPAYEFEGRAAAGISSGTA 845

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                    K              +   +   +      + ++   + +     +   W  
Sbjct: 846  METVEDILKKLPNGIAYEWTGASLQERQSGAQAPMLYAISILFVFLCLA---ALYESWTV 902

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  +  + L +   L      G+  ++     +LT +G +  + +++ +     ++L  
Sbjct: 903  PLSVMLAVPLGVVGALLATYTRGLTNDVYFQVGLLTTVGLAAKNAILIVEFA---VQLQE 959

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAA 809
                  D   +++   L   + TS+A    V+P+      G     +    +  G+V + 
Sbjct: 960  QGKKLFDATVEAVRLRLRPILMTSLAFGFGVIPLAIGTGAGAGGRNAIGTAVLGGMVAST 1019

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
               IF+     L +  W    +R
Sbjct: 1020 VLGIFLVPVFFLLVRSWFKSRSR 1042


>gi|221211374|ref|ZP_03584353.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           multivorans CGD1]
 gi|221168735|gb|EEE01203.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           multivorans CGD1]
          Length = 1066

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 155/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   +         S     +    ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGTATITLTFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLKVTKSSSSFLLVLAFNSEDGSMNRYDLANYVASHVQDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   ++      N    G   G    +   
Sbjct: 170 NGVGTVTLFGSQ-YAMRVWLDPVKLTNYGLTPIDVTNAISAQNVQVAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 LLQATITEATLL-------------RTPAEFGNILLKVNQDGSQVRLKDVAQIGLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPSAALGIQLATNANALATAKAVRAKVDELSKYFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++SL+G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSLVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLGPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNASRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++++  
Sbjct: 258 SQVRLKDVAQIGLGAENYNFDTKYNGQPSAALGIQLATNANALATAKAVRAKVDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +L G   N  ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAIMSLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLGPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 78/219 (35%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q                  +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMAAMEALATKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 62/522 (11%), Positives = 137/522 (26%), Gaps = 38/522 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANITDYLLKDEKDIVESAFTVNGFSFAGRGQNSGLVFVRLKDYAQRQHADQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  +++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-SGYKDAIVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLQGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++I G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDIDGRIKKVYVQSDAPFRMTPEDLNIWYVRNGSGGMVPFGAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A          A    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMAAMEALATKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVL 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             L      G  +       +   ++ + F AI ++    + I
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028


>gi|193078133|gb|ABO13076.2| Putative RND family drug transporter [Acinetobacter baumannii ATCC
           17978]
          Length = 1031

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/675 (12%), Positives = 204/675 (30%), Gaps = 43/675 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   +        ++R+P   P               + +  +
Sbjct: 8   QRPIFANVLAIIVMAFGIFSVM-----NLPVERYPDIAPPK-------------ITVSAN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSSSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVIGLYDSTGKTGNIELSDYLTTHVVDNLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGETDVFGSQ-YAMRIWLNPDKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKSNKTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLVEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     +   S   +           +    +      +
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSR 530
            + F GG      R F+IT+  ++ +S+  A+ +  A+   I++                
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLIVALILTPALCALILKPNPQPQRWAVWFNQKI 515

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L    I +      +    I I  ++ ++  LF +GL  G   K    +  +  + VD
Sbjct: 516 EQLKNQYIKLVQTSIHYSKSVIVIFVALIAVFTLFYNGLKSGFIPKEDQGILSVQIKLVD 575

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +  + +  +     F   + +   LV ++Y    S     + +         V    
Sbjct: 576 SAPIYQSQKIGEQVRQYFLTQEDKNVDLVLIRYGRNYSGTGQNLAQGFIALKPWDVRTGK 635

Query: 651 IQNTEIVGPKISREL 665
             + E +  +  +  
Sbjct: 636 ENSAEAIQKRAMKYF 650



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 8/212 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   +S ++   +S+ E  G  V  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   + ++   ++ +   +   I     +  R
Sbjct: 475 LVAAMALSLIVALILTPALCALILKPNPQPQR 506



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 77/246 (31%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 787  NDQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVASDSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             I           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DIGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             +      +  +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKNAIQAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFKSKA 1029


>gi|71892013|ref|YP_277743.1| preprotein translocase subunit SecF [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796119|gb|AAZ40870.1| preprotein translocase, auxillary membrane component [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 305

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 162/299 (54%), Gaps = 2/299 (0%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 F+  +     +SI     S C + T G N+G+DF GG+ + + + + V+L  ++
Sbjct: 5   YYKIYDFLAWKRLIFFLSIFLFFISCCTMITRGFNWGLDFTGGMLVEISSEKDVNLINIQ 64

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLSTIQNT 654
           + L      +   Q+F  +K+ ++RL   P ++      +  V   + + IV    ++  
Sbjct: 65  NILVQSGFKNPIVQHFGSQKDIMIRLPLDPNENKINQHTISKVLYALRQGIVQNFFVKQV 124

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +GP +  +LI  GI+ ++++ I +L+YI  RF+W  A G + +LI D+   LG  +LF
Sbjct: 125 NWIGPSVHSQLINTGIIALLVALICILVYITFRFEWRLATGVVISLIYDMIVILGILSLF 184

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I+ + T +AA+++ IGYS+NDK+V++DR+R+N      S S  D+ + S+++ L R++ 
Sbjct: 185 AIKIDSTIIAALMSAIGYSINDKIVIFDRIRENFYYTPVSKSI-DIFNISLSQVLSRTII 243

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           TS+   + +L + +WGG ++  FA+ +  G ++   SSI+IA+ +       R    +I
Sbjct: 244 TSVTTIMVLLILLIWGGDILHGFAVTLLLGTIIGTVSSIYIASALAFKFGTARNHFIKI 302


>gi|304311782|ref|YP_003811380.1| Acriflavine resistance protein B [gamma proteobacterium HdN1]
 gi|301797515|emb|CBL45735.1| Acriflavine resistance protein B [gamma proteobacterium HdN1]
          Length = 1045

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/630 (10%), Positives = 169/630 (26%), Gaps = 51/630 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G L  L     +  + ++P   P               + +  + 
Sbjct: 8   RPIFAWVLAILTMLAGALSLL-----ELPVQQYPDIAPP-------------QVRISANY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +   +    ++  + L              N  I+L+FA     +    +V  
Sbjct: 50  PGASAKNIEDSVTQIIEQNMTGLDGLLYMSSQSTSSGNINISLTFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  ++ T       ++             + S        + +  +
Sbjct: 110 KLSLAEPLLPTEVQQMGIMVTKASSSFFMIVGLVSTDGSMTRNDLSDYANSYVKEPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +       +L     T   +       N+       G   +    
Sbjct: 170 PGVGELRVFGAQ-YAMRIWLQADKLNAYGLTPLDVKAALGEQNSQFAAGQLGALPVVKHQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +  +              +    +        +        +       
Sbjct: 229 QLNATVIAQTRLESVE-------------EFKNILLKVNPDGSQVRVKDVARVELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L+         +           
Sbjct: 276 NAESFYNGKPATGIAIQLSTGANALDTAKAIRAQIEQLQKFFPHGVEAVYPFDTTPFVQI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV +V+F+ +   +  L+   +I + ++ T+ +++  G ++   ++
Sbjct: 336 SISEVLKTLVEAIVLVFLVMFLFLGNFRATLIPTIAIPVVLLGTIGVMAAAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +      +  S +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERIMDEEGLSPKEAARKSMDQITSALVGIGLVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + F GG      R F+IT+  ++ +S+  AI +  A+   +           R       
Sbjct: 456 MAFLGGSTGVIYRQFSITIVTAMGLSVLVAIVLTPALCATLLKASDVGNASQRRGFFGVF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R     V  ++L    ++  L        ++ +G +   V
Sbjct: 516 NRWFTRVTHGYVGSVNFSIHRPLRMMVIYAVLVGGLAVLYLRMPTSFLPVEDQGVVLNLV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDG 613
              +   +S     L+ ++       +   
Sbjct: 576 QLPQGATISRTVKVLQQVREHYEKEPSVMS 605



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 78/203 (38%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    +E ++K     V      +T         E+++  +  +++  + M +++ 
Sbjct: 301 DTAKAIRAQIEQLQKFFPHGVEAVYPFDTTPFVQISISEVLKTLVEAIVLVFLVMFLFLG 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T+G  A  G   N   +  ++  IG  V+D +VV + + 
Sbjct: 361 ---NFRATLIPTIAIPVVLLGTIGVMAAAGFSINTLTMFGMVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +S ++   KS+++     V   +      +PMA  GGS       F+I + 
Sbjct: 417 -ERIMDEEGLSPKEAARKSMDQITSALVGIGLVLSAVFVPMAFLGGSTGVIYRQFSITIV 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             + ++   +I +   +   +  
Sbjct: 476 TAMGLSVLVAIVLTPALCATLLK 498



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 81/263 (30%), Gaps = 15/263 (5%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +    N+ V  S   +         +   N     N           
Sbjct: 774  PFRMVPEDIDKWYVRNDKNQMVPFSAFTTTRWDYGSPRLERFNGIPSVNIQGEAAEGQSS 833

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   +  +V++    +    T  + +          +      + IS + + + +   
Sbjct: 834  GEAMAVMEALVQQMPDGVGLEWTGMSYQERVAGSQTPFL------LAISLLTVFLCLAAL 887

Query: 688  FK-WYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            ++ W      +  + L +   L   AL  G+  ++     +LT IG S  + +++ +  +
Sbjct: 888  YESWSVPFSVMLVVPLGVFGAL-LMALSRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAK 946

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            + +               +    L   + TSMA  + V P+A+    G     +    + 
Sbjct: 947  EQV---DQGKELFSAAIDAARLRLRPIIMTSMAFVLGVFPLAISSGAGAMSRQAIGSAVI 1003

Query: 803  FGIVVAASSSIFIAAPILLFIYD 825
             G++ A   +IF      + +  
Sbjct: 1004 GGVLAATFLAIFFVPLFYVLVMK 1026


>gi|254251545|ref|ZP_04944863.1| Cation/multidrug efflux pump [Burkholderia dolosa AUO158]
 gi|124894154|gb|EAY68034.1| Cation/multidrug efflux pump [Burkholderia dolosa AUO158]
          Length = 1066

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 155/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   +         S     +    ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGTATITLTFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLKVTKSSSSFLLVLAFNSEDGSMNRYDLANYVASHVQDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   ++      N    G   G    +   
Sbjct: 170 NGVGTVTLFGSQ-YAMRVWLDPVKLTNYGLTPVDVTSAISAQNVQVAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 LLQATITEATLL-------------RTPAEFGNILLKVNQDGSQVRLKDVAQIGLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPSAALGIQLATNANALATAKAVRAKIDELSKYFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++SL+G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSLVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLGPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNASRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++++  
Sbjct: 258 SQVRLKDVAQIGLGAENYNFDTKYNGQPSAALGIQLATNANALATAKAVRAKIDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +L G   N  ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAIMSLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLGPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 78/219 (35%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q                  +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMAAMEALATKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     +  +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQESEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/522 (11%), Positives = 136/522 (26%), Gaps = 38/522 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANITDYLLKDEKDIVESAFTVNGFSFAGRGQNSGLVFVRLKDYAQRQHADQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  +++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-AGYKDAMVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLQGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDLNIWYVRNGSGGMVPFGAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A          A    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMAAMEALATKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQESEKMGPIEAALEAARLRLRPILMTSLAFILGVL 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             L      G  +       +   ++ + F AI ++    + I
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028


>gi|299529808|ref|ZP_07043241.1| RND efflux inner membrane transporter CmeB [Comamonas testosteroni
           S44]
 gi|298722222|gb|EFI63146.1| RND efflux inner membrane transporter CmeB [Comamonas testosteroni
           S44]
          Length = 1055

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/582 (13%), Positives = 167/582 (28%), Gaps = 42/582 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           L+++P   P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGALSI-----KLLPLEQYPEIAPP-------------RVTIGAQY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S    Q +ITL+FA     +    +V  
Sbjct: 50  TGASAETVENSVTQIIEQQIKGIDNMLYMSSTSNASGQARITLTFAPGTNVDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +QG  ++L    K   +      +  +V            A++    I    +D IG  
Sbjct: 110 KIQGAVNRLPDSVKTRGVFINKGGQDFLVTYSFYSPDEDVTAVDIGDYINSNLVDIIGRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP+++ +     + +S      N        G      + 
Sbjct: 170 EGVGDINVFGTP-YAMRIWMDPAKMEKYGLIPSDLSSALNAQNAQVSAGQLGALPAVQNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +    +                 +      +
Sbjct: 229 QLNATITARTKL-------------KTVEQFEDIVLKSSNDGSVVTIKDVARVELGADNL 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L+          V   +      
Sbjct: 276 SIQAKLNGMPGAGMGIILADGANAMAVSDAVAAKLAELKPFFPNQIDYFVSSDSTPFVRA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S           LV+IV+F+ +   +  L+   ++ + ++ T  +LS+ G ++   ++
Sbjct: 336 SISEVVHALGEAMVLVVIVMFVFLQNFRATLIPAIAVPVVLLGTFGVLSVAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +   +S   +           +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHETGKSPKEATRQSMKEITPALVGIGVTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+F A+++  A+   +      +S           
Sbjct: 456 MAFFGGSTGVIYRQFSITIVAAMALSVFVALTLTPALCATL-LKAPDRSHGDGHERPIRS 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
               I  +F R        +      ++           + F
Sbjct: 515 GVLGINDRFFRWFNRNFDAAANRYQSTVAFSLGRAKRMMLIF 556



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V           I  +        +  +     +++A +  +     ++    P 
Sbjct: 260 VTIKDVARVELGADNLSIQAKLNGMPGAGMGIILADGANAMAVSDAVAAKLAELKPFFPN 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I + +  +  + + ++I +++  + +   L     + + +  T
Sbjct: 320 QIDYFVSSDSTPFVRASISEVVHALGEAMVLVVIVMFVFLQNFRATLIPAIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ++ G   N   + A++  IG  V+D +VV + +     ++ T  S ++   +S+ E
Sbjct: 380 FGVLSVAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHETGKSPKEATRQSMKE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V   +      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 ITPALVGIGVTLSAVFVPMAFFGGSTGVIYRQFSITIVAAMALSVFVALTLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 79/263 (30%), Gaps = 9/263 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      +  V  N+   +     +      G      ++G   +    +   G S    
Sbjct: 786  MLPTDIAKWTVRNNKGEMVPFGAFSKSYWAYGSPQLLRYNGSPAYEFEGRAAAGISSGTA 845

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                    K              +   +   +      + ++   + +     +   W  
Sbjct: 846  METVEDILKKLPNGIAYEWTGASLQERQSGAQAPMLYAISILFVFLCLA---ALYESWTV 902

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  +  + L +   L      G+  ++     +LT +G +  + +++ +     ++L  
Sbjct: 903  PLSVMLAVPLGVVGALLATYTRGLTNDVYFQVGLLTTVGLAAKNAILIVEFA---VQLQE 959

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAA 809
                  D   +++   L   + TS+A    V+P+      G     +    +  G+V + 
Sbjct: 960  QGKKLFDATVEAVRLRLRPILMTSLAFGFGVIPLAIGTGAGAGGRNAIGTAVLGGMVAST 1019

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
               IF+     L +  W    +R
Sbjct: 1020 VLGIFLVPVFFLLVRSWFKSRSR 1042


>gi|323975084|gb|EGB70193.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli TW10509]
          Length = 1037

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLNPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPTSLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PTSLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|313202329|ref|YP_004040987.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylovorus sp. MP688]
 gi|312441645|gb|ADQ85751.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylovorus sp. MP688]
          Length = 1043

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 176/689 (25%), Gaps = 45/689 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPIFAWVIAIVIMLAGVLAI-----RSLPIAQYPMIAPPAV---------SITATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    +        +     +  ITL+F      +    +V   L  
Sbjct: 54  AKAVEDSVTQVIEQKMKGIDHLTYMSSTSDSSGSVTITLTFDAGTNPDIAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D ++  +         +++     +      I+    +     D +       
Sbjct: 114 ATPLLPEDVQRQGVQVAKASSNFLMVVGFISEDNSMSNIDLGDYVGSNIQDILSRVNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T A +S      N        G            
Sbjct: 174 DTQLFGS-KYAMRIWLDPAKLHNYSLTPADISAAITAQNAQVSAGQIGGMPATQGQALNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 +           
Sbjct: 233 TVTAQSRL-------------QTPEQFGDILLKSTTDGAAVRLRDVARVELGGESYDVVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T E      A L          ++          S   
Sbjct: 280 RYNGKPATGLAIKLATGANALDTAEAVKAKLAELEPLFPQGMKAVLPYDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+++ +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VVKTLIEAIVLVFIVMYVFLQNFRATLIPTIAVPVVLLGTFGVLAAAGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMQEEGLSPKEATRRSMEQITGALIGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------------KKMKSIDI 525
           GG      R F+IT+  ++ +S+  A+ +  A+   +++             +     + 
Sbjct: 460 GGSTGVIYRQFSITIVSAMALSVLVALILTPALCATLLKPHRHGDTKRSLASRLFGGFNR 519

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L    +         +G+   ++  +  +            + +G +   V+ 
Sbjct: 520 GVERTTRLNQSLVRRMLNGLGRYGLVYGLIVLVMGVLFTLLPSSFLPDEDQGILFTQVIL 579

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                    ++ L+ ++   +  Q    +  F V      G           +K      
Sbjct: 580 PAGATTERTQAVLQQVERHFLQDQKEAVKSVFTVSGFSFGGSGQNNGLAFVSMKDWSERK 639

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            P   I            ++    +   I
Sbjct: 640 RPDLKISAVAGKAMGYFSQIREAMVFAFI 668



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D+  +        L        +++     ++    ++  + P 
Sbjct: 260 VRLRDVARVELGGESYDVVARYNGKPATGLAIKLATGANALDTAEAVKAKLAELEPLFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +I + + + I +++  + +   L     + + +  T
Sbjct: 320 GMKAVLPYDTTPFVKISIEEVVKTLIEAIVLVFIVMYVFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A  G   N   + A++  IG  V+D +VV + +     +    +S ++   +S+ +
Sbjct: 380 FGVLAAAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLSPKEATRRSMEQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 ITGALIGIALVLSAVFVPMAFFGGSTGVIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 78/241 (32%), Gaps = 8/241 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + +       S      ++ +   E+   +      G         E +    +    L 
Sbjct: 793  NANGEMVPFSSFATAHWAYGSPRLERYNGLSSTEIMGSPAPGHSTGEAMAIMESLAAKLP 852

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                 E  G      +       +  +S + + + +   ++ W      +  + L +   
Sbjct: 853  PGIGYEWTGLSYQERMTGSQAPALYALSLLIVFLCLAALYESWSIPFAVMLVVPLGVVGA 912

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L   +L G+  ++     +L  IG S  + +++ +  ++ M          +   +++  
Sbjct: 913  LIAASLRGLSNDVYFQVGLLLTIGLSAKNAILIVEFAKEQM---EQGKEMVEATLEALRL 969

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 V TS+A  + VLP+AV    G     +    +  G++ A   ++       + + 
Sbjct: 970  RFRPIVMTSLAFILGVLPLAVSSGAGSGAQNALGTGVIGGMITATVLAVLFVPLFFVAVR 1029

Query: 825  D 825
             
Sbjct: 1030 R 1030


>gi|221200194|ref|ZP_03573237.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           multivorans CGD2M]
 gi|221206653|ref|ZP_03579665.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           multivorans CGD2]
 gi|221173308|gb|EEE05743.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           multivorans CGD2]
 gi|221180433|gb|EEE12837.1| inner membrane multidrug efflux protein BpeB [Burkholderia
           multivorans CGD2M]
          Length = 1066

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 155/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   +         S     +    ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGTATITLTFAPGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLKVTKSSSSFLLVLAFNSEDGSMNRYDLANYVASHVQDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   ++      N    G   G    +   
Sbjct: 170 NGVGTVTLFGSQ-YAMRVWLDPVKLTNYGLTPVDVTSAISAQNVQVAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 LLQATITEATLL-------------RTPAEFGNILLKVNQDGSQVRLKDVAQIGLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPSAALGIQLATNANALATAKAVRAKVDELSKYFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++SL+G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSLVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLGPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNASRDKYHVGVHHVIKRSGRWLIIY 544



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++++  
Sbjct: 258 SQVRLKDVAQIGLGAENYNFDTKYNGQPSAALGIQLATNANALATAKAVRAKVDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +L G   N  ++  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFAIMSLVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLGPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 78/219 (35%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q                  +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMAAMEALATKLPTGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1029



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 61/522 (11%), Positives = 136/522 (26%), Gaps = 38/522 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANITDYLLKDEKDIVESAFTVNGFSFAGRGQNSGLVFVRLKDYAQRQHADQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  +++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 650  MFGRY-SGYKDAIVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 708

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 709  PTLQGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 753  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDLNIWYVRNGSGGMVPFGAFATGHWTY 810

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A          A    A      +      +  + + +  
Sbjct: 811  GSPKLERYNGISAMEIQGQAAPGKSTGQAMAAMEALATKLPTGIGYSWTGLSFQEIQSGS 870

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 871  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 926

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 927  QVGLLTTVGLSAKNAILIVEFARELQMTEKMGPIEAALEAARLRLRPILMTSLAFILGVL 986

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             L      G  +       +   ++ + F AI ++    + I
Sbjct: 987  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1028


>gi|119468664|ref|ZP_01611716.1| putative multidrug efflux pump (RND family) protein
           [Alteromonadales bacterium TW-7]
 gi|119447720|gb|EAW28986.1| putative multidrug efflux pump (RND family) protein
           [Alteromonadales bacterium TW-7]
          Length = 1043

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 73/690 (10%), Positives = 179/690 (25%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+L           + ++PS  P               + +    
Sbjct: 8   RPIFAWVLAIVVMLAGILAI-----KSLPIAQYPSIAPPA-------------ISITATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +K       +   S       +TLSF+     +    +V  
Sbjct: 50  PGASARTLEDTVTQVIEQKMKGLDGLLYMSSTSESSGSATLTLSFSAETDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +V        +++            I+    +     D +   
Sbjct: 110 KLATATPLLPEAVQRQGVVVAKSARNFLMVYAFMSKDGSMTNIDIGDYVSSNVQDIVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP++L+    T A +S      N        G        
Sbjct: 170 EGVGEVQLFGSQ-YAMRIWLDPAKLQNYKLTPADISASISAQNAQVSAGQLGAMPAVAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    +                 +       
Sbjct: 229 QLNATVTAQSRL-------------QTPEQFRDILVKTNADGSFVKLSDVARVELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +      A L          +V          
Sbjct: 276 RVVARYDGKPASGLGIKLASGANALDTAQGVKDAIAELEPFFPEGLEAVVPYDTTPFVAL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L   G ++   ++
Sbjct: 336 SIEKVIHTLIEAVVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFGILYTFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERLMTEEKLSALDATRKSMDEIKGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------- 522
           + FF G      R F+IT+  ++ +S+  A+ +  A+   +++   + +           
Sbjct: 456 MAFFSGSTGIIYRQFSITLVSAMGLSVLVALILTPALCATLLKPSHVHNDKSLFGKFFTG 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +             ++     A+ + V   ++    +             + +G +   
Sbjct: 516 FNRGFDKTNSGAQSFVSRMIKNAKRYLVIYFLIVGGMAYVFSNLPTAFLPDEDQGILFNQ 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V              ++ ++   ++ Q+      F V      G           +K   
Sbjct: 576 VSLPAGSTTEQTLEVVKKVENHYLNEQSEAVNGIFTVTGFSFAGSGQNSAIGFVNLKHWD 635

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                  ++Q            +    +  
Sbjct: 636 ERQRDDLSVQGVAGKAMGYFSSIKEAFVFA 665



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 87/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       +   +  +      + L        +++   + ++    ++    
Sbjct: 258 SFVKLSDVARVELGGESYRVVARYDGKPASGLGIKLASGANALDTAQGVKDAIAELEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I K I  +I + + + + +++  + +   L     + + + 
Sbjct: 318 PEGLEAVVPYDTTPFVALSIEKVIHTLIEAVVLVFVVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G    FG   N   + A++  IG  V+D +VV + +     +    +S  D   KS+
Sbjct: 378 GTFGILYTFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERLMTEEKLSALDATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +E  G  V  +M      +PMA + GS       F+I +   + ++   ++ +   +   
Sbjct: 436 DEIKGALVGIAMVLSAVFIPMAFFSGSTGIIYRQFSITLVSAMGLSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 74/248 (29%), Gaps = 19/248 (7%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +       V  S   +   +     +   N                   
Sbjct: 779  RMVPEDLNKWYVRNNEGDMVPFSAFATAYWTYGSPRLERYNGFSAMEIQGTAAPGYSTGQ 838

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +VK+    I    T  + +         L+        +S + + + +   ++
Sbjct: 839  AMDEMERLVKQLPNGISSEWTGISFQERSSSGQAPLLY------GLSLLFVFLCLAALYE 892

Query: 690  -WYFALGAITTLILDITKTLGFFALFG--IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             W         +I+ +       A  G  +  ++     +LT IG +  + +++ +    
Sbjct: 893  SWSVPFA--VMMIVPLGIFGAAMAALGSGLSNDIYLQVGLLTTIGLASKNAILIVEFA-- 948

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--WGGSVIGSFAIPMAFG 804
             +      +   +    ++   L   + TSMA    V+P+A+    GS   +    +   
Sbjct: 949  -IHKMDEGLDLVEAAVAAVRLRLRPILMTSMAFICGVIPLAIASSAGSGAQN---ALGIS 1004

Query: 805  IVVAASSS 812
            I+    +S
Sbjct: 1005 IIGGTLAS 1012


>gi|184159224|ref|YP_001847563.1| cation/multidrug efflux pump [Acinetobacter baumannii ACICU]
 gi|183210818|gb|ACC58216.1| Cation/multidrug efflux pump [Acinetobacter baumannii ACICU]
 gi|322509138|gb|ADX04592.1| multidrug efflux pump [Acinetobacter baumannii 1656-2]
          Length = 1031

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/691 (10%), Positives = 206/691 (29%), Gaps = 46/691 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   +        ++R+P   P               + +  +
Sbjct: 8   QRPIFANVLAIIVMAFGIFSVM-----NLPVERYPDIAPPK-------------ITVSAN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSSSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVIGLYDSTGKTGNIELSDYLTTHVVDNLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGETDVFGSQ-YAMRIWLNPDKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKSNKTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLVEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     +   S   +           +    +      +
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG      R F+IT+  ++ +S+  A+ +  A+   I++            ++  
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLIVALILTPALCALILKPNLQPQRWAVWFNQKI 515

Query: 533 LIPDCIAIQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                  I+        ++   V    L ++ ++            + +G + + +    
Sbjct: 516 EQLKNQYIKLVQTSIHYSKSVIVIFVALIAVFTLFYNGLKSGFIPKEDQGILSVQIKLVD 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +S  +   E ++   ++ ++ + +   +   +   G      +    +K        
Sbjct: 576 SAPISQSQKIGEQVRQYFLTQEDKNVDLVLIRYGRNYSGTGQNLAQGFIALKPWDVRTGK 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            ++ +  +    K         I   + +++
Sbjct: 636 ENSAEAIQKRAMKYFSHFNNAQINVTLPASV 666



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 8/212 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   +S ++   +S+ E  G  V  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   + ++   ++ +   +   I     +  R
Sbjct: 475 LVAAMALSLIVALILTPALCALILKPNLQPQR 506



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 77/246 (31%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 787  NDQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVASGSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             I           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DIGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             +      +  +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKNAIQAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFRSKA 1029


>gi|167625070|ref|YP_001675364.1| preprotein translocase subunit SecD [Shewanella halifaxensis
           HAW-EB4]
 gi|167355092|gb|ABZ77705.1| protein-export membrane protein SecD [Shewanella halifaxensis
           HAW-EB4]
          Length = 604

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 146/525 (27%), Positives = 262/525 (49%), Gaps = 30/525 (5%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +   +  P+ L  ++    P+ +     N I LGLDLRGG   +L+V+ +        
Sbjct: 94  TLLASQVNDPSKLTLTLAPAAPNWLLSLGFNPIKLGLDLRGGVQFLLDVEIEPVYKLHSN 153

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
            + + +R F +++ +   ++R+  +                  +      +   +N    
Sbjct: 154 TFIESVRQFAREQSLYGVTIRERVDG---------NVNIATTDLAQRA-AIRQFINTQYP 203

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
              +  + E+ +   LS+     +    ++Q+++I+R RI+Q+GISE+ +QR G HRI I
Sbjct: 204 NWQITNSGEQSLDAGLSEAEKTNIRDLTVKQNLQIMRSRIEQLGISEAVVQRQGEHRIRI 263

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPG QDP+  + ++G TA ++F++V+            + L+D  G    V  +  + G
Sbjct: 264 ELPGVQDPAAAKSVIGATASLAFYQVMQ-----PGSVNAKVLKDEQGAPVYVARRAVLGG 318

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDG 300
            H+  A A+        VV     + G            +       +        +   
Sbjct: 319 EHIVDARASLGEMGLPEVVIHLDRDGGKTMSDFSRDNIGKPMATAYSEYSRGDNGKIRQT 378

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    QA    +  I+G+    +A  LA +LRAGS+   + IVEER +G  LG ++
Sbjct: 379 TEVISVATIQAQLGDRFSITGSADYASAQQLALLLRAGSMTAPVTIVEERTIGPSLGEEN 438

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAG 419
           I  G  A+  G+ + +LFM + Y + G +A+ ++  N+IL   L++L+  A LTLP IAG
Sbjct: 439 ITNGFSALALGMAVTLLFMGLWYRRLGWIANVALIANMILIFGLMALIPGAVLTLPGIAG 498

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +G+AVD+N+L+ ERI+++ ++ +S   ++D GF  A+STI D+N T +I  VVL+ 
Sbjct: 499 LVLTVGMAVDTNVLIFERIKDKLKEGRSFAHAIDRGFDSAFSTIVDANFTTMITAVVLYA 558

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G G ++GFA+T+GL +L SMFT I   RA++ +       +++ 
Sbjct: 559 IGNGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRNFSRNVK 603



 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 35/180 (19%), Positives = 80/180 (44%), Gaps = 6/180 (3%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  E I  G   + +     L+++ + ++      A   LI ++    G  AL  
Sbjct: 429 TIGPSLGEENITNGFSALALGMAVTLLFMGLWYR-RLGWIANVALIANMILIFGLMALIP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  +K      SF   ID+  +      V 
Sbjct: 488 GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE---GRSFAHAIDRGFDSAFSTIVD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833
            +    I+ + +   G   I  FA+ +  G++ +  + IF +  ++ + Y    ++N ++
Sbjct: 545 ANFTTMITAVVLYAIGNGPIQGFALTLGLGLLTSMFTGIFASRALVNWAYGRNFSRNVKV 604


>gi|163842578|ref|YP_001626982.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Brucella suis
           ATCC 23445]
 gi|163673301|gb|ABY37412.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Brucella
           suis ATCC 23445]
          Length = 1052

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/565 (12%), Positives = 160/565 (28%), Gaps = 38/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+      LP +   ++P   P               +V+    
Sbjct: 8   RPVFAAVISIVLVLAGLICI--RILPVAP--QYPELTPP-------------QVVVSATY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +       + +   ++T++FA     +     V  
Sbjct: 51  PGASAETVAQTVAAPLEQQINGVENMLYMQSSSLGSGTMQLTVTFALGTDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +         + +                   +   +D +   
Sbjct: 111 RVQRATSSLPQEVQRLGVTVDKRFTTILGMVAMFATTDRYDRTYVGNYALLNVVDDLKRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I   +     P +L Q   T + +S      N       FG +    + 
Sbjct: 171 PGVGDVQLLGNIDYSMRVWLRPDKLAQYNLTPSDVSAAIQEQNAQFAAGRFGDQPDPHAG 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y    +  +                    + +      A          +       
Sbjct: 231 PFTYTATTQGRL------------PDAAAFENIILRSSSQNAATLRLKDVARVELGTESY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L            +   +   T+E        L+A         +          
Sbjct: 279 LVDSNLNGTPAVPIAIYLQPGANALNTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKV 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 339 SIEEVVHTFIEAIILVVLVVFIFLQNWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +       + S   +           +    +      + 
Sbjct: 399 FGLVLAIGIVVDDAIVVLENVERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIP 458

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ +S   A+ +  A+   I++    + I    +     
Sbjct: 459 VAFMGGLVGEMYKQFAVTIAISVTLSGLVALMLTPALCALILKPGHHEPILPFRIFNRAF 518

Query: 534 IPDCIAIQFMRARFWGVGISILFSI 558
                        F       L   
Sbjct: 519 ERVTSGYTRGVRFFLKRATIGLIIF 543



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +  +K      +  +   +T         E++   I  +I+  + + I++ 
Sbjct: 304 NTMELIQNRMNELKASFPAGIDYAIPFDTTKFIKVSIEEVVHTFIEAIILVVLVVFIFLQ 363

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T     + G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 364 ---NWRATLIPVIAVPISIIGTFAGMYVLGFSINLLTLFGLVLAIGIVVDDAIVVLENV- 419

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + T  +S R    K++ E  G  +   +      +P+A  G   G +   FA+ +A
Sbjct: 420 -ERIMTTEKLSPRKAAIKAMGEVTGPVIAIVLVLCAVFIPVAFMGGLVGEMYKQFAVTIA 478

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++ +   +
Sbjct: 479 ISVTLSGLVALMLTPAL 495



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 85/268 (31%), Gaps = 12/268 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + L  + +    +    +   N                  
Sbjct: 776  FRRDPGDLKHVFVRADSGSMIPLDALVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSG 835

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+V + + +   ++   +               G   +I   I + + +  ++
Sbjct: 836  DAIKAMQEVVAQVLPQGYQIAWTGSAYQEVSTSG-----TGSQAMIFGLIMVFLILAAQY 890

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W   L  IT +   I   L    L G+  ++     ++TLIG +  + +++ +     
Sbjct: 891  ECWSLPLAVITAVPFAIFGALLATDLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFA--- 947

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    +  S  +    +        V TS+A  + V+P+AV    G +   S    +  G
Sbjct: 948  VLERESGKSAIEAAASAARLRFRPIVMTSLAFILGVVPLAVSTGAGSASRHSIGTGVIGG 1007

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++ A   + F        I     K  +
Sbjct: 1008 MLAATFIATFFIPMFYSLIARKPPKKHK 1035



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 61/540 (11%), Positives = 138/540 (25%), Gaps = 61/540 (11%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRG---GSHLVLEVDE 62
                   +I   GLL +      +      P              +G   G  ++     
Sbjct: 533  LKRATIGLIIFAGLLGSTYYLFERVPGSLLPDED-----------QGFLFGVAVLPPAAS 581

Query: 63   DDFVNGFLQMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFAD---SRFKENI 111
             +     L   S+ +R          +    +    ++     + +   D       +  
Sbjct: 582  LERTTVVLDQVSENIRKNPAVDNVFAVSGFDLLSGGLKTSAGTMFIMLKDWKERTTPDAD 641

Query: 112  ADKVTLFLQGVNSKLNVDP----KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A  +   + G+N+ +            ++  +      +  Q+     +    + +  I 
Sbjct: 642  ARNLPRTIMGMNAGIKDGMVLAFNPPPIMGLSTTGGFELYVQDRTGGGVESLTQATKLIT 701

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                      E    R      + Q   + D  + + +      +               
Sbjct: 702  E---AAAKRPELQGVRTTFDPNVPQYDIQLDREKAKAMGVPINSVFTAMQATFG------ 752

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                           V D       +     +  + +     +   F    +     +  
Sbjct: 753  ------------SLYVNDFTLYGRNYQVNLQSEAEFRRDPGDLKHVFVRADSGSMIPLDA 800

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                K +          A    +   +     +    I+    + A +      I     
Sbjct: 801  LVTVKRIVGPDQLERFNAFNAAKVTGNPAPGYTSGDAIKAMQEVVAQVLPQGYQIAWTGS 860

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALL 405
              + V           G+ A++ GL+++ L +   Y      L    ++   +   L   
Sbjct: 861  AYQEVSTSG------TGSQAMIFGLIMVFLILAAQYECWSLPLAVITAVPFAIFGALLAT 914

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G T  +    G+V  IGLA  + IL+ E    E    +S   +        +  I  
Sbjct: 915  DLRGLTNDVYFQIGLVTLIGLAAKNAILIVEFAVLERESGKSAIEAAASAARLRFRPIVM 974

Query: 466  SNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L      G  +       +   +L + F A   +      I R    K 
Sbjct: 975  TSLAFILGVVPLAVSTGAGSASRHSIGTGVIGGMLAATFIATFFIPMFYSLIARKPPKKH 1034


>gi|260549241|ref|ZP_05823461.1| multidrug resistance protein mexB [Acinetobacter sp. RUH2624]
 gi|260407647|gb|EEX01120.1| multidrug resistance protein mexB [Acinetobacter sp. RUH2624]
          Length = 1031

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/677 (12%), Positives = 207/677 (30%), Gaps = 43/677 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   +        ++R+P   P               + +   
Sbjct: 8   QRPIFANVLAIIVMAFGIFSVM-----HLPVERYPDIAPPK-------------ITVSAS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSSSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVIGLYDSTGKTGNIELSDYLTTHVVDNLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGETDVFGSQ-YAMRIWLNPDKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +   +  A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVDDFKNIVVKSDKTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L A        +    N     
Sbjct: 276 YQSFNTINGYPAAGVSISLSSGANAIQTSKLIHQTLDQLAAKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLVEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     +   +   +           +    +      +
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLTPKEAAIESMGEISGALVGITLVLTAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSR 530
            + F GG      R F+IT+  ++ +S+  A+ +  A+   I     + M+         
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLTVALILTPALCALILKPNPEPMRWAVWFNQKI 515

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L    I +      +    I I  ++ ++ +LF  GL  G   K    +  +  + VD
Sbjct: 516 DQLKNKYIKLVQTSIHYSKSVIVIFVALIAVFMLFYSGLKSGFIPKEDQGILSVQIKLVD 575

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +  + +  +     F   +     LV ++Y   ++     + +         V  + 
Sbjct: 576 SAPISESQKIGEQVRQYFLTKEDNNVDLVLIRYGRNNAGTGQNLAQGFIALKPWDVRTAK 635

Query: 651 IQNTEIVGPKISRELIR 667
             + + +  +  +    
Sbjct: 636 EDSADAIQKRAMKYFRN 652



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 83/199 (41%), Gaps = 8/199 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLAAKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   ++ ++   +S+ E  G  V  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLTPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   + ++ + ++ +   +
Sbjct: 475 LVAAMALSLTVALILTPAL 493



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 76/246 (30%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D    +   + +K     +    
Sbjct: 787  NNQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVAGGSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             I           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DIGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             +      +  +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKNAIQAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFKSKA 1029


>gi|197337845|ref|YP_002158572.1| OqxB [Vibrio fischeri MJ11]
 gi|197315097|gb|ACH64546.1| OqxB [Vibrio fischeri MJ11]
          Length = 1037

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 85/687 (12%), Positives = 199/687 (28%), Gaps = 36/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  ++  +GL+      L    +  +P+  P   I          + V     
Sbjct: 9   RPKFALVISLVMTLMGLIA-----LKVLPIAEYPAISPTVII---------VNTVYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++       ++    +  + + F      +    +V   +  
Sbjct: 55  ADVVKKTVAQPLESKINGVEDMIYMSSNIGNDGSYSLRVYFRIGADGDMAQVRVNNLVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  + K+  +    +    + +   +       +I  S       ++++   E   
Sbjct: 115 ATSTLPPEVKQIGVTVRKKSSDILGVVTLSSPNKTYDSIYLSNYADLNLVERLKRLEGMS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    +P+++  L  T   +       N        G     D   NQY
Sbjct: 175 DITLLGKKSYSMRIWLNPNKMSTLNLTAKDVISAVKSQNIQVAAGKIGGMPAPDQQQNQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++ K  ++                +    +                 +           
Sbjct: 235 VLQTKGRLTSTD-------------EFANIVIRANKDGSIIRLSDVARLELGAQGYEADG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +    +                     +   +      S   
Sbjct: 282 QLNNQPAAVMALYQLPTANALDAMSKVKAAMKEYSKTFPDDLEYNIAYDSTEYVEASIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I A LV IV+++ +   +   +   +I +++I T A++SL+G T+   S+ G++
Sbjct: 342 VYETLIIAALLVAIVVYVFLQNLRATAIPIIAIPVSIIATFAVMSLMGMTINTISLFGLI 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +    + K+     +           +  + +  L   V +   
Sbjct: 402 LAIGIVVDDAIIVVENVERIIHEKHMKPIPATIEAMKEVTGPVLATTLILLAVFVPVALL 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFL 533
            G + +    FA+T+ +S+LIS   A+++  A+   I+  K           N       
Sbjct: 462 PGISGKMFNQFAVTICVSVLISAINALTLSPALCGLILTDKHSEPVAPLRAFNRGFDAVT 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 + FM  R +   I  +  I  +   F       +  +      V    P   S+
Sbjct: 522 KKYQFLVGFMSKRLFASSIIYIALIGVLGYTFMTIPTAFVPNEDKGAFMVEMRLPDSASL 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            R+            +    E    V        S      + ++K    +      +  
Sbjct: 582 QRTIPILQDYTRDLLEMDGVEDVVSVSGFSLINMSAIPNAGMLIIKLNNWDDRKDPALHQ 641

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAM 680
             ++               ++ +  A+
Sbjct: 642 KALMNKVRQMLNTIPNANALVFATPAI 668



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 93/237 (39%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + LS V       Q  +   Q  +     +   Q    +++     ++   K+ ++  
Sbjct: 260 SIIRLSDVARLELGAQGYEADGQLNNQPAAVMALYQLPTANALDAMSKVKAAMKEYSKTF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     N      +     I +    +II+A+ + I +++  +        I  + + I 
Sbjct: 320 PDDLEYNIAYDSTEYVEASIDEVYETLIIAALLVAIVVYVFLQNLRATAIPIIAIPVSII 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +L G+  N  ++  ++  IG  V+D ++V + +     ++   +       +++
Sbjct: 380 ATFAVMSLMGMTINTISLFGLILAIGIVVDDAIIVVENV--ERIIHEKHMKPIPATIEAM 437

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
            E  G  + T++      +P+A+  G        FA+ +   ++++A +++ ++  +
Sbjct: 438 KEVTGPVLATTLILLAVFVPVALLPGISGKMFNQFAVTICVSVLISAINALTLSPAL 494



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/237 (9%), Positives = 68/237 (28%), Gaps = 10/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             ++ +   D            +  +      S    + +E + +                
Sbjct: 802  KIKPIFGPDSLMNYNLFGSATINGVPAPGYSSGDVVKAIEKLAENELPKGYSFEWSGMTY 861

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               +          +   +S +   +++  +++ W      +  + + I   +      G
Sbjct: 862  QELEAGN----AAPIAFALSLLFTYLFLVAQYESWSIPTAVMMAVPIAILGAMATLFALG 917

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              F+L     ++ LIG S    +++ +  +  +       S  +   ++          T
Sbjct: 918  QPFDLYVQIGIVILIGMSAKVAILIVEFAK--VLREEKGYSIIEAAKEAARLRFRAVQMT 975

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + A    V P+ +    G     S    +  G++++            + +   R +
Sbjct: 976  AFAFIWGVFPLVIASGAGAESRHSLGFAVFGGMILSTLIGTIFTPVFFVTMQSLRER 1032


>gi|271501382|ref|YP_003334407.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Dickeya
           dadantii Ech586]
 gi|270344937|gb|ACZ77702.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           dadantii Ech586]
          Length = 1042

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/689 (10%), Positives = 191/689 (27%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +  L        ++++P+  P             + + + V+ 
Sbjct: 8   RPIFAWVLAIIVMIAGGIAIL-----GLPVEQYPNVAP-------------TAVQIRVNY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  LQ      +   +    G+   S     +   ++TLSF +    +    +V  
Sbjct: 50  PGADATTLQNSVTQVIEQNMTGLNGLMYMSSTSDSSGTLQLTLSFKNGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +          ++     +       + +  +     D I   
Sbjct: 110 KLQVATPLLPQEVQQQGITVMKSSSTFFLVPGFVDESGRMSMEDIADFVASTIKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L     T   +S    + N        G        
Sbjct: 170 DGVGDTTLFGSQ-YAMRIWLDPNKLNNYQLTPVDVSNALKVQNAQIAAGQLGGAPAIKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        I +     
Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGDILLKVNSDGSQVKLHDVARIERGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +     +       +  +   T +      + L          +           
Sbjct: 276 QFVVKINGKAASALGIQLASGANAMDTAKAIRAKLSELEPYYPQGLKVVYPYDTTPFISI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T   LS LG ++   ++
Sbjct: 336 SINEVVKTLFEAIVLVFLVMYLFLQSLRATLIPTIAVPVVLLGTFGTLSALGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLKPRAATRKSMDQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+++  A+   +                   
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVLVALTLTPALCATLLKPVKPGEHAKNRGLFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    +        +A        + +   ++    ++            + +G +    
Sbjct: 516 NRRFDASSSHYARAVASMLNGTGRYLIIYGVIVLGMALLFARLPTAFLPSEDQGVLATQA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +          +  L+ +    ++ +  +      V      G           +K    
Sbjct: 576 VLPAGATQERSQQILDQINDWYLNDEKKNVANVLTVNGFGFAGRGQNIGIAFIGLKDWAE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +++        +   +LI   I  
Sbjct: 636 RNGAENSVDAIAARANQAFSKLIDAQIAA 664



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 77/203 (37%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    L  ++    + + +    +T         E+++     +++  + M +++ 
Sbjct: 301 DTAKAIRAKLSELEPYYPQGLKVVYPYDTTPFISISINEVVKTLFEAIVLVFLVMYLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T G  +  G   N   +  ++  IG  V+D +VV + + 
Sbjct: 361 ---SLRATLIPTIAVPVVLLGTFGTLSALGYSINTLTMFGMVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +  R    KS+++  G  V  ++      +PMA +GGS       F+I + 
Sbjct: 417 -ERVMAEEGLKPRAATRKSMDQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIV 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             +V++   ++ +   +   +  
Sbjct: 476 SAMVLSVLVALTLTPALCATLLK 498



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 67/184 (36%), Gaps = 7/184 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +         L      +  G      L  +    +  +S I + + +   ++ W   
Sbjct: 838  EAMALMEQLASQLPKGIGYDWTGMSYQERLSGQQAPALYALSLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L    + G+  ++  V  +LT IG S  + +++ +     M     
Sbjct: 898  FAVMLVVPLGVVGALLATTIRGLNNDVYFVVGLLTTIGLSAKNAILIVEFANDMMVKEGK 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++ +  L   + TS+A  + VLP+A+    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEAAHMRLRPILMTSLAFILGVLPLALSRGAGSGAQNAVGTGVIGGMIAATL 1015

Query: 811  SSIF 814
             +I+
Sbjct: 1016 LAIY 1019


>gi|332749997|gb|EGJ80409.1| inner membrane domain protein [Shigella flexneri K-671]
 gi|333012837|gb|EGK32214.1| inner membrane domain protein [Shigella flexneri K-304]
          Length = 694

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGASPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +        A  +   T          L A        +           
Sbjct: 276 STVARYNGKPVAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVIYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+ +S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMRLSVFVAMSLTPALCATI 496



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPVAGIAIKLAAGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + I++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVIYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMRLSVFVAMSL 488


>gi|330808824|ref|YP_004353286.1| acriflavine resistance protein B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376932|gb|AEA68282.1| acriflavine resistance protein B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 1051

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 75/695 (10%), Positives = 191/695 (27%), Gaps = 52/695 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G L  L        ++++P   P               + ++V  
Sbjct: 8   RPIFAWVLALIIMLVGALSIL-----NLPINQYPDIAPPA-------------VAIQVSY 49

Query: 63  DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +Q       ++  + +              + +I ++F      +    +V  
Sbjct: 50  PGASAQTVQDTVVQVIEQQMNGIDNLRYISSESNADGSMRIIVTFNQGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  L  T  ++  ++              + S  I+    D I  +
Sbjct: 110 KLNLATPLLPREVQQQGLRVTKFQQNFMMFIGLVSTDGKHTKEDLSNYIVSNIQDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L Q   T   ++      N        G    R   
Sbjct: 170 SGVGDFQIWGTQ-YAMRVWLDPAKLNQFQLTPVDVTEAIEAQNVQVASGTIGGLPARKGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K  +               + +    +        +       +I       
Sbjct: 229 VFTATIIGKTRL-------------QTSEQFGDILLKVNSDGSQVRLSDVADISLGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T +        L+         +           
Sbjct: 276 SINAQANGKPASGIAIRLATGANALDTAKAIRATVDRLKPFFPAGIEAVYPYDTTPVVTE 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV +V+ + +   +  ++   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SISGVMHTLGEAVVLVFLVMLLFLQNLRATIITTLTVPVVLLGTFGVLAAAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L IGL VD  I+V E +     +   S   +      +    +    +      + 
Sbjct: 396 FGMILAIGLLVDDAIVVVENVERVMAEEHLSPREATRKSMGQIQGALVGIALVLSAVLLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+F A+    A+   +++              F  
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMALSVFVALVFTPALCATLLKPIDPTKHGQPKRGFFGW 515

Query: 534 IPDCIAI----------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                            Q  R R  G  + ++    +I +      ++  D   G+    
Sbjct: 516 FNRRFDACVNGYEQGVGQITRHRVPGFMVYLVIVAGTIWMFARIPTSFLPDEDQGLIFTQ 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +       +     +       +  +     K           +   + +   +    + 
Sbjct: 576 VQTPANSSAESTQKVLDRMTQYLLDKEHGEGKAVATVFTVNGFNFAGRGQNSGIAFVNLK 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +      +  +  +E + K    ++ + +
Sbjct: 636 PWDERDSDNTVFKIAQRAQQEFL-KYRDALVYAVV 669



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 77/255 (30%), Gaps = 13/255 (5%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N+   +            G      ++G     +     PG S  Q         + 
Sbjct: 792  VRNNQGQMVPFSAFASAEWIFGSPKLSRYNGVPAEQILGTPAPGYSSGQAMAEVERIAEQ 851

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   +             +      + +++  + +     +   W   +  I  + L
Sbjct: 852  LPPGVGISFTGLSYEERLSGSQAPALYALSILVVFLCLA---ALYESWSIPIAVILVVPL 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L   AL G+  ++     +L  +G +  + +++ +  ++   L        +   
Sbjct: 909  GVIGALMATALRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKE---LNEKGTPLLEATV 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   V TS+A  + VLP+ +    G     +    +  G++ A   +IF     
Sbjct: 966  EACRMRLRPIVMTSLAFILGVLPLTISSGAGSGSQHAIGTGVIGGMITATVLAIFWVPLF 1025

Query: 820  LL----FIYDWRAKN 830
             +         R K 
Sbjct: 1026 FVSVSTLFKGSRKKQ 1040



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +    T+ + +  T G  A  G   N   +  ++  IG  V+D +VV + +     
Sbjct: 362 LRATIITTLTVPVVLLGTFGVLAAAGFSINTLTMFGMILAIGLLVDDAIVVVENV--ERV 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S R+   KS+ +  G  V  ++     +LPMA +GGS       F+I +   + 
Sbjct: 420 MAEEHLSPREATRKSMGQIQGALVGIALVLSAVLLPMAFFGGSTGVIYRQFSITIVSAMA 479

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++     +   +  
Sbjct: 480 LSVFVALVFTPALCATLLK 498


>gi|332085235|gb|EGI90411.1| inner membrane protein [Shigella boydii 5216-82]
          Length = 1037

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
            S             +    DP +L +     + +     + NN   G   G        
Sbjct: 170 ASVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 84/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A+    + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAEKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|325122197|gb|ADY81720.1| The Resistance-Nodulation-Cell Division (RND) Superfamily
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 1035

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/633 (12%), Positives = 178/633 (28%), Gaps = 47/633 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   G+L       P+  + RFPS  P               + +   
Sbjct: 8   RRPVFAWVIAIFIILFGVLSI-----PKLPIARFPSVAPPE-------------VNITAS 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   +            +      +IT +F      +     V 
Sbjct: 50  YPGATPKTINDSVITLIEREMSGVKNLLYYSATTDSSGTAEITATFKPGTDVDMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQVVRQQGLAVEASSSGFLMLVGLNSPNHRYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G R L + 
Sbjct: 170 VEGVGKIQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRNNNIDIAPGRLGDRPLVNG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++  +              +         +           ++      
Sbjct: 229 QLITIPLSAQGQLENVE-------------QFKNISLKSNISGANIKLSDVADVEMGAQS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T +        L+          V         
Sbjct: 276 YNFAILENGKPATAAAIQLSPGANAVKTADAVKQKLEELKVNLPEGMQFSVPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 336 ISIEKVVHTLIEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTIMLLTGYSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +     +   S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLSPKEATSKAMTEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +    G      R F ITM +SIL S F A+++  A+   +++            + F 
Sbjct: 456 PMALASGSVGIIYRQFTITMSVSILFSAFLALTLTPALCATLLKPVDANHQKKGFYAWFD 515

Query: 533 LIPDCIAIQFM------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              D +  ++               I  +           +     +  +          
Sbjct: 516 RSFDKVTKKYEAILLKVVKHTIPTLIIFVVITGLTFAGMKYWPTAFMPEEDQGWFLTSFQ 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
            P D +  R+            +  D + N  +
Sbjct: 576 LPSDATAERTTKIVKDFEGHLNEQSDVKSNISI 608



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + LS V       Q  + +                   ++V     ++   +++   +P
Sbjct: 260 NIKLSDVADVEMGAQSYNFAILENGKPATAAAIQLSPGANAVKTADAVKQKLEELKVNLP 319

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLIL 702
                +         +  I K +  +I + + + I +++     R+    A+ A   L  
Sbjct: 320 EGMQFSVPYDTAPFVKISIEKVVHTLIEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL-- 377

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
               T     L G   N+  +  ++  IG  V+D +VV + +     + T  +S ++   
Sbjct: 378 --LGTFTIMLLTGYSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLSPKEATS 433

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++ E     +  ++      LPMA+  GSV      F I M+  I+ +A  ++ +   +
Sbjct: 434 KAMTEITSPIIGITLVLAAVFLPMALASGSVGIIYRQFTITMSVSILFSAFLALTLTPAL 493

Query: 820 LLFIYD 825
              +  
Sbjct: 494 CATLLK 499



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 79/222 (35%), Gaps = 6/222 (2%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +L  + I   +       +          G         + +++    I  L      E 
Sbjct: 792  SLSEVVIPQWNKLPQQYNRYNGRPSLSIAGVPNIGVSSGDAMREMEKLIAKLPQGIGYEW 851

Query: 657  VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
             G  +  +     +V +I +S + + + +   ++ W   L  +  + L I   +    L 
Sbjct: 852  TGISLQEKQSESQMVFLIALSMLVVFLVLAALYESWSIPLSVMLVVPLGIFGAVLAIMLR 911

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++     ++T+IG S  + +++ +  +    L    ++  +    +    L   + 
Sbjct: 912  GMPNDIFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMTLIEAAVAAAKLRLRPILM 968

Query: 775  TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 969  TSLAFTCGVIPLVIATGAS-SETQHALGTGVFGGMISATILA 1009


>gi|227115277|ref|ZP_03828933.1| acriflavin resistance protein B [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 719

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/574 (11%), Positives = 154/574 (26%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  M+   GLL  +     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVLAIMVMLTGLLAIV-----KLPIAQYPTIAPPA-------------IDVTATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S      +ITL+F      +    +V  
Sbjct: 50  PGADASTLQDSVTQVIEQNMNGIDNLMYMSSSSDSSGTVQITLTFEAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVNVQKSSSSFLMVAAFISEDGKMSQEDIADYVAANVKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +S    + NN       G        
Sbjct: 170 SGVGDAQLFGSQ-YAMRIWLDPNKLNNYQLTAGDVSAAIRVQNNQIAAGQLGGAPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 QLNASIIAQTRLNSAE-------------EFSKILLKVNADGSQVRLKDVARVELGAEGY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T                     +           
Sbjct: 276 DVIARFNGKPAAGIGIKLATGANALDTATAVKDALTKAEEFFPSGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATKRSMEQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F+IT+  ++++S+  A+ +  A+   +     +K I          
Sbjct: 456 MAFTGGSTGAIYRQFSITIVSAMVLSVLVALILTPALCATL-----LKPIAKGDHGEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F ++              +   L  +
Sbjct: 511 FFGWFNRLFEKSTNHYTDSVANILRSTGRYLVIY 544



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +        +        +++     ++    K  E  
Sbjct: 258 SQVRLKDVARVELGAEGYDVIARFNGKPAAGIGIKLATGANALDTATAVKDALTKAEEFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   + A++  IG  V+D +VV + +     +    +  ++   +S+
Sbjct: 378 GTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATKRSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA  GGS       F+I +   +V++   ++ +   +   
Sbjct: 436 EQIQGALVGIALVLSAVFVPMAFTGGSTGAIYRQFSITIVSAMVLSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498


>gi|320179287|gb|EFW54245.1| RND efflux system, inner membrane transporter CmeB [Shigella boydii
           ATCC 9905]
          Length = 1041

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 146/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM----GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++               RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKETTHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKETTHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NTSGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFIADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEIMQKEGK--TPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|317133595|ref|YP_004092909.1| protein-export membrane protein SecF [Ethanoligenens harbinense
           YUAN-3]
 gi|315471574|gb|ADU28178.1| protein-export membrane protein SecF [Ethanoligenens harbinense
           YUAN-3]
          Length = 396

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/315 (24%), Positives = 147/315 (46%), Gaps = 10/315 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           +       + + + I F+  R     ISI   +  I +    G+   I FKGG  +    
Sbjct: 71  SDAEEKGEVYNGLHIDFIGKRRVFYTISISLIVIGILVSAIFGVKLDIQFKGGAIIQYSY 130

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              +DLS  ++       G       D       +L                +   + + 
Sbjct: 131 TGTLDLSTAQTLANKTIAGGDFTVQVDKVPASHTQLLVLQTTKALTNTQQASLYNALNKQ 190

Query: 646 VPLSTIQNTEIV--GPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITT 699
              ++++  +     P+  R+   + I  V+++A+ +++Y+WIRF+        L A+  
Sbjct: 191 FSSNSLKKYQSNDVSPQTGRQFFLQSIGAVLLAALLIVLYVWIRFRHIGGLPAGLTALIA 250

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L+ D+      F++F I  + + VA  LT++GYS+ND +VVYDR+R+N  L+  S+ F+D
Sbjct: 251 LLHDLVIAFVAFSIFRIPISDSFVAVALTILGYSINDTIVVYDRIRENRGLFGRSMKFKD 310

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSSIFI 815
           ++++SIN++  RS+ T++  F+++  + V+        I  FA+PM  G+V    S+I I
Sbjct: 311 IVNRSINQSFTRSINTTLVTFLAIATVCVFSIIFHLDSIRGFALPMMVGVVTGCYSTICI 370

Query: 816 AAPILLFIYDWRAKN 830
           A P+ +   + + K 
Sbjct: 371 AGPLWVSWVEHQEKK 385


>gi|256827919|ref|YP_003156647.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577095|gb|ACU88231.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfomicrobium baculatum DSM 4028]
          Length = 1051

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 186/683 (27%), Gaps = 41/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L       G+L           + ++P   P +                    
Sbjct: 8   RPVFAWVLAIAAMLGGVLAI-----TGLPISQYPPIAPPSV---------AISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    +        + +     +ITL+F      +    +V   LQ 
Sbjct: 54  AKTLEDAVTQVIEQKMKGIDNLDYMSSTSQSSGQAEITLTFKAGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +   +  T      + +     +       + +  +    +D +   E   
Sbjct: 114 AMALLPQEVQAQGVQVTKAVRNFVQVLGFVSEDGSMARAQLADYVAANVLDGMSRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +P +L     T A ++      N        G           +
Sbjct: 174 EVTLFGSQ-HAMRIWLNPDQLHTYSLTPADVAAAIKAQNAQISAGQLGGLPSVAEQRINF 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 +           
Sbjct: 233 TVSVQDRL-------------QTPEQFRNVLLKTNTDGSTVRLGDVAKVELGAENSQVVS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T+E        + +        +           S   
Sbjct: 280 RYNGQPSAALAIKLATGANALKTVEAIAEYTDSISSTFPAGLKVVEAFDTTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VVRTLLEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +    S   +  +  ++    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMHEDGLSARDATHLSMTQISGALVGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++++S+  A+ +  A+   ++R  K           F    D 
Sbjct: 460 GGSTGVIYRQFSITVVSAMVLSVLVALILTPALCATMLRPAKPGQGKRGFFGLFNRGFDR 519

Query: 538 IAIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANRPV 589
            A  + +      R WG  + +   I +  +     L  G    + +G + + V      
Sbjct: 520 TANGYQKLVGSMTRRWGRSMILYALILAAMMFLFQRLPTGFLPDEDQGMLFVQVQLPIGA 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                 + LE ++   +  +    +    V      G           +K       P +
Sbjct: 580 TQDRALNVLERIETHFLEAEKDSVQSLMAVAGFSFAGSGQNTAMCFVRLKDWSMRKGPDT 639

Query: 650 TIQNTEIVGPKISRELIRKGIVG 672
            ++           +     +  
Sbjct: 640 HVKAIAGRAMAAFSQYRDAQVFA 662



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 86/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   +  +        L        +++     +      I+   P 
Sbjct: 260 VRLGDVAKVELGAENSQVVSRYNGQPSAALAIKLATGANALKTVEAIAEYTDSISSTFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I + +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 GLKVVEAFDTTPFVRISIEEVVRTLLEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A FG   N   + A++  IG  V+D +VV + +     ++   +S RD    S+ +
Sbjct: 380 FGVLAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMHEDGLSARDATHLSMTQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 438 ISGALVGIALVLSAVFVPMAFFGGSTGVIYRQFSITVVSAMVLSVLVALILTPAL 492



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/271 (10%), Positives = 81/271 (29%), Gaps = 9/271 (3%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            +      Y +  +   +  V       + +          G    + ++G     +    
Sbjct: 768  IMQGEAPYRMMPEDLARWHVRGKSGQMVPMSSFATAHWTSGSPRLERYNGVPAMQILGAP 827

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
             PG S  Q                  +         +   +      + +++  + +   
Sbjct: 828  APGKSSGQAMATMENLAGQLPEGIGYSWTGLSFQERQAGSQTALLYGLSILVVFLCLA-- 885

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +   W      I  + + +   L   +L G+  ++     +LT +G +  + +++ + 
Sbjct: 886  -ALYESWSLPASVILVVPIGVVGALAAVSLRGLTNDVYFQVGLLTTMGLAAKNAILIVEF 944

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
             +    L  + +     + ++  + L   + TS+A  + VLP+A+    G     S    
Sbjct: 945  AK---SLAESGMDLMTAVVEAARQRLRPILMTSLAFGLGVLPLALNSGAGSGGQNSIGTG 1001

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  G + +      +     + +        
Sbjct: 1002 VIGGTIASTIIGSLLIPVFFVIVAKRGLSRK 1032


>gi|37676873|ref|NP_937269.1| preprotein translocase subunit SecD [Vibrio vulnificus YJ016]
 gi|37201417|dbj|BAC97239.1| preprotein translocase subunit SecD [Vibrio vulnificus YJ016]
          Length = 628

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 158/513 (30%), Positives = 272/513 (53%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     N I LGLDLRGG   +L VD D   +    + SDE+R+ L+ 
Sbjct: 128 ISFSYVSVAPQWLSDMGFNPIKLGLDLRGGVQFLLNVDVDKAFDEQRDVLSDEIRAMLRT 187

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +    +R      T   A         +KV+ +L+            N  V T    +
Sbjct: 188 EKLRGVQVRNTG---TAQLAVQSDNAVALEKVSNYLRS--------NYPNWQVRTHSDSL 236

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  S     +  +  ++Q+++I+R RI+++GI+E+ +QR G+H I I+LPG QDP++ +
Sbjct: 237 EVKPSDAYAAEFQTTTLQQNLKIMRGRIEELGITEALVQRQGAHSIRIELPGVQDPAQAK 296

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F+ V   +  +        L+D+DG   ++E +  ++G H+  A A  D 
Sbjct: 297 NVIGATASLAFYSVKSPSDARSG--DDLVLQDADGRSVVLEKRPVLTGEHIVNARAGVDK 354

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+   +    +     + +    Q+ 
Sbjct: 355 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYTTQENGDIARSERVISVATIQSQ 414

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  +++ A  LA +LRAGSL   ++IVEER +GA LG+++I  G  A+  G+
Sbjct: 415 LGSQFRITGAGSMDEAQQLALLLRAGSLTAPVSIVEERTIGASLGAENIQNGFAALALGM 474

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 475 GLTLTFMALWYRRLGWVANVALVANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 534

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +++ ERI+++ R+ +S+  ++D GF  A++TI D+NIT +I  VVL+  G G ++GFA+T
Sbjct: 535 VIIFERIKDKMREGRSLAQAIDSGFDSAFATILDANITTMITAVVLYAIGNGPIQGFALT 594

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMFT +   RAM+  +      +++ 
Sbjct: 595 LGLGLLTSMFTGVFASRAMINLVWGKDSRRNVR 627



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 82/207 (39%), Gaps = 6/207 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    +I     +G  +  E I+ G   + +     L ++ + +
Sbjct: 426 SMDEAQQLALLLRAGSLTAPVSIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWY 485

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L+ ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 486 R-RLGWVANVALVANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 544

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      S    ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 545 MRE---GRSLAQAIDSGFDSAFATILDANITTMITAVVLYAIGNGPIQGFALTLGLGLLT 601

Query: 808 AASSSIFIAAPIL-LFIYDWRAKNARI 833
           +  + +F +  ++ L       +N R+
Sbjct: 602 SMFTGVFASRAMINLVWGKDSRRNVRV 628


>gi|196230718|ref|ZP_03129579.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chthoniobacter flavus Ellin428]
 gi|196225059|gb|EDY19568.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chthoniobacter flavus Ellin428]
          Length = 845

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 58/536 (10%), Positives = 143/536 (26%), Gaps = 33/536 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           + +FP   P                      
Sbjct: 8   RPVFAWVIAILIMLAGALSI-----TNLPIAQFPPLAPPTI---------SVTATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS-FADSRFKENIADKVTLFLQG 121
              V   +    ++  + +                     F      +    +V   +  
Sbjct: 54  AKTVEDTVTQVIEQKLNGIDNLRYIEAESTSTGTLTLTVTFEPGTNPDIAQVQVQNKVAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L ++ ++  +  +      +++     +       + +  ++    D IG      
Sbjct: 114 ATPLLPLEVQQQGVQVSKSVRNFLIVVGLVSEDGKMSGTDLADYLMSVMQDPIGRLPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L +   TTA++       N        G            
Sbjct: 174 EIQTFGTQ-YAMRIWLDPDKLTKYQMTTAELVTAIKAQNAQVASGALGDLPATPGQLLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +        R        +           
Sbjct: 233 TITAQSRL-------------QTPEQFGAILLRVNTDGSRVLLRDVARVELGSETYTTYA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T+         L     P    I           S   
Sbjct: 280 RYNGVPASGMAIRPASGANALKTVAVVKKKVDELSKFFPPGVKAIYPYDTTPFVRISVEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +++  G ++   ++ G+V
Sbjct: 340 VVKTLIEAIVLVFLVMYLFLQNWRATLIPSIAVPVVLLGTFGVMAAAGYSINTLTLFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +    A V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMREEGLPPKEATRKSMDQISGALVGIGLVLCAAFVPMAFF 459

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            G +    R F++T+  S+ +S+  A+ +  A+   I++               + 
Sbjct: 460 TGSSGAIYRQFSLTIVSSVTLSVLVALILTPALCATILQPIAKGHHAKERGFFGWF 515



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 85/231 (36%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +      +      + +        +++    V++    ++++  P     
Sbjct: 264 DVARVELGSETYTTYARYNGVPASGMAIRPASGANALKTVAVVKKKVDELSKFFPPGVKA 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     R  + + +  +I + + + + +++  + W   L     + + +  T G  
Sbjct: 324 IYPYDTTPFVRISVEEVVKTLIEAIVLVFLVMYLFLQNWRATLIPSIAVPVVLLGTFGVM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+++  G 
Sbjct: 384 AAAGYSINTLTLFGLVLAIGLLVDDAIVVVENV--ERVMREEGLPPKEATRKSMDQISGA 441

Query: 772 SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            V   +    + +PMA +    G++   F++ +   + ++   ++ +   +
Sbjct: 442 LVGIGLVLCAAFVPMAFFTGSSGAIYRQFSLTIVSSVTLSVLVALILTPAL 492


>gi|298506731|gb|ADI85454.1| efflux pump, RND family, inner membrane protein [Geobacter
           sulfurreducens KN400]
          Length = 1052

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/693 (11%), Positives = 172/693 (24%), Gaps = 55/693 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  M+   GLL           + ++P   P               + +    
Sbjct: 8   RPIFAWVISIMVMLGGLLAI-----KTLPVSQYPPIAPP-------------QITINAMY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +Q      +   L     +   S          I L+F           +V  
Sbjct: 50  PGASAQTVQDTVTQVIEQKLNGIDNLIYMSSTSDSAGAVAINLTFKAGTDPNIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +      +  +++     +         +  ++    D I  +
Sbjct: 110 KLQLATPLLPQIVQRQGIQVVKSTKNFLMIVGLVSEDGSLTRDTLTDYLVSNVQDIISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP++L     TT  +       N       FG        
Sbjct: 170 EGVGEVTVFGSQ-NAMRIWLDPAKLNNFHLTTNDVIAAIQAQNAQVSAGQFGGSPAVHGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                         
Sbjct: 229 QLNATITARTLL-------------QTPEQFNNIILRTNPDGSTVKLKDVAEAKVGTENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +        A  +   T E        L          +           
Sbjct: 276 DIEARYKGKPLGGMAIRLAAGANALDTGERVKAKMEELSRYFPAGMKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV I++F+ +   +  L+   ++ + ++ T+ +L+  G ++   ++
Sbjct: 336 SIKEVVKTLIEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGTMGVLAAAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +V+ IGL VD  I+V E +      +  S   +      +  S ++          + 
Sbjct: 396 FALVIVIGLLVDDAIVVVENVERIMSEEGLSPHDATIKSMGQITSALWGIATVLSAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519
           + FFGG      R F+IT+  ++++S+  A  +  A+   +                 + 
Sbjct: 456 MAFFGGSTGVIYRQFSITIISAMILSVLVAQILTPALCSTLLKPVEKGHTPGECGWFCQF 515

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            +  +             +   F +   + V    + ++     L         + +G I
Sbjct: 516 FRHFNKGFDWAREKYEGIVGRSFGKPVRYLVVYGGIVAVMVFFFLRLPTAFLPDEDQGFI 575

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              V              +E L+   +  +    E    V      G           +K
Sbjct: 576 ICQVQLPAGATKERTIKVIEELEHHFLEREKKTVEAIITVAGFSFAGRGQNMGLAFVKLK 635

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                  P                ++       
Sbjct: 636 DWELRPTPDLKAPAVAGRAMAAFSKIKDGMAFA 668



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 86/236 (36%), Gaps = 8/236 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  DI  +        +        +++     ++   ++++   P 
Sbjct: 260 VKLKDVAEAKVGTENYDIEARYKGKPLGGMAIRLAAGANALDTGERVKAKMEELSRYFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++ +  +I +   + I +++  +     L     + + +  T
Sbjct: 320 GMKVVYPYDTTPFVKISIKEVVKTLIEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  A  G   N   + A++ +IG  V+D +VV + +     +    +S  D   KS+ +
Sbjct: 380 MGVLAAAGFSINTLTMFALVIVIGLLVDDAIVVVENV--ERIMSEEGLSPHDATIKSMGQ 437

Query: 768 TLGRSVYTSMAAF-ISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
                ++          LPMA +GGS       F+I +   ++++   +  +   +
Sbjct: 438 ITSA-LWGIATVLSAVFLPMAFFGGSTGVIYRQFSITIISAMILSVLVAQILTPAL 492



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 78/252 (30%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N    +          Q G    + ++G  +  +  Q  PG S  +           
Sbjct: 793  VRNNNGEMVPFSAFATAHWQYGSPRLERYNGIPSVEIMGQAAPGVSTGEAMAEMEKMAAQ 852

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                             +   +      + +++  +A+     +   W      +  L L
Sbjct: 853  LPAGIGYEWTGLSYEEKQAGAQAPALYAISLLVVFLAVA---ALYESWTIPFVNLLMLPL 909

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    L  +  ++     +LT +G S  + +++   +++ +          +   
Sbjct: 910  GLVGAVTAVTLRMLPNDVYLQIGLLTTVGLSTKNAILIIQFIKEQLH---HGHDLVEATL 966

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             ++   L   + TS+A F   LP+A+    G +   +    +  G++ A    +      
Sbjct: 967  LAVKIRLRPVIMTSLAFFFGTLPLALTKGAGAAAQNAIGTAVTGGLLSATFIDLIFIPFF 1026

Query: 820  LLFIYDWRAKNA 831
             + +    AK  
Sbjct: 1027 FVMVSKLFAKKQ 1038


>gi|56476524|ref|YP_158113.1| acriflavine resistance protein B [Aromatoleum aromaticum EbN1]
 gi|56312567|emb|CAI07212.1| Acriflavine resistance protein B [Aromatoleum aromaticum EbN1]
          Length = 1053

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 72/691 (10%), Positives = 182/691 (26%), Gaps = 47/691 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        + ++PS  P   +          +       
Sbjct: 8   RPIFAWVIAIVIMLAGALSIL-----TLPVSQYPSIAPPTVV---------INASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        S     +  +TL+F      +    +V   LQ 
Sbjct: 54  AKAVEDSVTQIIEQKMTGLDGLLYMKSSSDSYGRASLTLTFDAGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +         +++            ++ +  ++    D +       
Sbjct: 114 ALPLLPQAVQQQGVQVAKSTANFLMVVGFVSQDGSLKQVDLADFLVSTVQDPLSRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP++L +   T   +       NN       G     +  G   
Sbjct: 174 EVQVFGSQ-YAMRVWLDPAKLVKFGLTPGDVQAAIRAQNNEVSAGQLGGTPAVEGQGFTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I           
Sbjct: 233 SITAQSRL-------------ETVGQFEDILLRSSAQGGEVRLEDVARIEIGAENYGTVG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +   T          +          +V          S   
Sbjct: 280 RYNGQPAAAIGIKLAAGANALDTATAVRAQLDRMAPYFPAGVEVVVPYDTTPFVAISIQG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +++  G T+   ++ G+V
Sbjct: 340 VVKTLLEAIALVFLVMYLFLQNIRATLIPTIAVPVVLLGTFGVMAAFGFTINTLTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPKEATKRSMDQITGALVGIGLVLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSI 523
           GG      R F+IT+  ++ +S+  AI    A+   +                    +  
Sbjct: 460 GGSTGVIYRQFSITVAAAMALSVLVAIIFTPALCATMLKPVEKGHEHGEGGWFSGFFRWF 519

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  +      + ++ ++  L         + +G +   V
Sbjct: 520 NGMFARNTRRYESTVGRILHRSLRFLAIYLAIIAVLALLFLRMPTSFLPEEDQGVMFSQV 579

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                       + L+ ++   +  +       F V      G           ++    
Sbjct: 580 TLPAGATQDRTLAVLKKVEDHFLENEKDTVRSIFTVAGFSFGGSGQNMGLAFINLQDWDE 639

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              P   +++          ++    +   +
Sbjct: 640 RGEPGMDVKSVAGRAMDAFAQIREAMVFAFV 670



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 80/235 (34%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +      +        +        +++     +     ++    P 
Sbjct: 260 VRLEDVARIEIGAENYGTVGRYNGQPAAAIGIKLAAGANALDTATAVRAQLDRMAPYFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I+  +  ++ +   + + +++  +     L     + + +  T
Sbjct: 320 GVEVVVPYDTTPFVAISIQGVVKTLLEAIALVFLVMYLFLQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A FG   N   +  ++  IG  V+D +VV + +     +    +S ++   +S+++
Sbjct: 380 FGVMAAFGFTINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATKRSMDQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V   +      +PMA +GGS       F+I +A  + ++   +I     +
Sbjct: 438 ITGALVGIGLVLSAVFIPMAFFGGSTGVIYRQFSITVAAAMALSVLVAIIFTPAL 492



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 83/267 (31%), Gaps = 13/267 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +      +       V LS   +   S     +   N       L +         
Sbjct: 782  RMKPEDLAKWYVRNRQGEMVPLSAFATAHWSYGSPRLERYNGQPAVEILGQAAPGLSSGD 841

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V E++ K    I    T  + E              +  +  S + + + +   ++
Sbjct: 842  AMAAVEEIMAKLPAGIGYEWTGTSYEERRSGAQAP----ALYAL--SLLVVFLCLAALYE 895

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L +   L      G+  ++     +L  IG S  + +++ +  +  M
Sbjct: 896  SWSVPFAVMLVVPLGVLGALLAATGRGLSNDVYFQVGLLATIGLSAKNAILIVEFAKAQM 955

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +              ++   L   + TS+A  + VLP+A+    G     +    +  G 
Sbjct: 956  EEEGKE--LVAATLDAVRMRLRPILMTSLAFGLGVLPLAISTGAGSGSQNAIGTGVLGGT 1013

Query: 806  VVAASSSIFIAAPI-LLFIYDWRAKNA 831
            + A    IF      ++ I  +R K A
Sbjct: 1014 IAATVLGIFFIPLFYVVIIRVFRKKPA 1040


>gi|311696584|gb|ADP99457.1| multidrug resistance protein [marine bacterium HP15]
          Length = 1048

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/516 (12%), Positives = 154/516 (29%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   GL   +        +  +P   P                     
Sbjct: 9   KRPVFATVLSLLIVVFGLAALM-----GLPVREYPDIDPPVV---------SISTDYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    +   S ++       S  Q +++ ++ F  +R  +  A+ V   +  
Sbjct: 55  AAEVVDTQITQVIEGAISGIEGIRSIESSTEQGESRTSIEFTTARDVDIAANDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  +    ++         ++      D     + E S    R   D++ + +   
Sbjct: 115 VANQLPDEADPPVVRKADSDARPMMWVTLRSDVW--DSAELSDFADRVLADRLSVLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  RL     T A++       N               +   + 
Sbjct: 173 DVRIGGERRYAIRVWLDRERLAARDITVAEVERALRANNVELPAGSVDSSTRNFTVRAEG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +   ++     G          N+   +   +   
Sbjct: 233 RLS--------------------NVEQFRELVVRRDGNDLLRLGEVANVQMGVESDVSRL 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +     +        +R    P                S   
Sbjct: 273 RANGQTAIGMGIIRQSKANTVAVSDAVRAELEKIRETLPPEVTIAESYDESIFIRASIKE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV++V+F+ +   +  L+   +I + VI     L  LG ++ + ++  ++
Sbjct: 333 VVTTLAIAVSLVILVIFLFLRSWRATLIPAVTIPVAVIGAFIGLGFLGFSINVLTLLAVI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I+    + +    +   G  +    +  + +T +   V + F G
Sbjct: 393 LAIGLVVDDAIVMLENIQRRIDEGEPPLLAAYRGAKQVAFAVIATTLTLVAVFVPISFMG 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFI 514
           G   R    F  T+  +++ S   A+++   +    
Sbjct: 453 GNIGRLFAEFGFTLAAAVVFSSLVALTLAPMLCSKW 488



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 84/244 (34%), Gaps = 9/244 (3%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +V       +     + Q   G              S A    LE +++ +   V ++ 
Sbjct: 259 ANVQMGVESDVSRLRANGQTAIGMGIIRQSKANTVAVSDAVRAELEKIRETLPPEVTIAE 318

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
             +  I      +E++    + V +  + + +++     W   L    T+ + +      
Sbjct: 319 SYDESIFIRASIKEVVTTLAIAVSLVILVIFLFL---RSWRATLIPAVTIPVAVIGAFIG 375

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   N+  + AV+  IG  V+D +V+ + +    +             +   +   
Sbjct: 376 LGFLGFSINVLTLLAVILAIGLVVDDAIVMLENI---QRRIDEGEPPLLAAYRGAKQVAF 432

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + T++      +P++  GG++      F   +A  +V ++  ++ +A  +        
Sbjct: 433 AVIATTLTLVAVFVPISFMGGNIGRLFAEFGFTLAAAVVFSSLVALTLAPMLCSKWLRHS 492

Query: 828 AKNA 831
            ++A
Sbjct: 493 PESA 496



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 66/164 (40%), Gaps = 7/164 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ + + + +  +F+ W   L  + ++ L +T  L      GI  N+ +   ++ L+G 
Sbjct: 860  ALAFVIVFLVLAAQFESWIHPLIIMLSVPLAVTGALLALWWTGISLNIYSQIGIIMLLGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ +      +L       R+ I +         + T+++     +P+ +    
Sbjct: 920  MAKNGILIVEFAN---QLRDKGYEVREAILEGACLRFRPVLMTTISTIFGAVPLVIATGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G     +  + +  G++ A + ++FI   +   +  +   +  +
Sbjct: 977  GAESRAAIGMVILGGLIFATTLTLFIIPVLYNLLARFAKSSNAV 1020


>gi|157961806|ref|YP_001501840.1| acriflavin resistance protein [Shewanella pealeana ATCC 700345]
 gi|157846806|gb|ABV87305.1| acriflavin resistance protein [Shewanella pealeana ATCC 700345]
          Length = 1034

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/637 (11%), Positives = 180/637 (28%), Gaps = 43/637 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISILLIIFGLVA-----FEKLPLREYPNIDPPVV---------SIQTNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F   R  E  A+ V   + G
Sbjct: 55  SAAVVESRITQLVEDRISGVEGIKHISSSSSDGRSNVTLEFDVGRDIEAAANDVRDRVSG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  + +   +      +  I+      D      ++ +    R  ID+  + +   
Sbjct: 115 LLNNLPEEAEPPEVQKANGGDEVIMWLNLVSD--QMTTLQLTDYARRYLIDRFSVIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 NMRLGGGKVYAMRVWIDRQALAARNLTVADIEAALRSENVELPAGSVESKERHFTVRLER 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +                           +  +              +           
Sbjct: 233 SFKTS-------------------DDFANLVLVEGEDGYLVKLGDVAKVEIGSEEERITF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +       A  L   +               +      S   
Sbjct: 274 RGNREAMIGLGVSKQSTANTLDVARAANKLVDQINPTLPAGMEIKRSYDSSVFIEASVKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFIAMFLVIVVIYLFLGSVRAMLIPALTVPVSLMATFIVLFALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVVLENIHRRIEEGDSPLKAAYLGAREVAFAVVATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMI--FIIRYKKMKSIDINPLSRFFLIPD 536
           G      + FA+ M  +++ S   A+++   M         +    +         L   
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSIVALTLSPMMCSKVLKPSTEDPWLVRKIDSGMDKLSGY 513

Query: 537 CIAIQFMRARFWGVGISIL---FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +      R   +  S++       +             + +G + L V   +      
Sbjct: 514 YRSTLTSAMRHPFLVSSLILVALVCSAFLAKEVPQEFAPREDRGSMFLIVNGPQGASFEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           + S ++ ++   +        K  L+R     G S  
Sbjct: 574 IESYMDEIENRLMPLVEAGEIKRLLIRAPRGFGRSAN 610



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 69/188 (36%), Gaps = 12/188 (6%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A  ++++ +   +   + +    ++ +      +E+ +   + + +  + + +++     
Sbjct: 299 AANKLVDQINPTLPAGMEIKRSYDSSVFIEASVKEVYQTLFIAMFLVIVVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T       G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 356 VRAMLIPALTVPVSLMATFIVLFALGYTINLLTLLAMILAIGMVVDDAIVVLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S          E     V T++      +P+    G    +   FA+ M+  ++
Sbjct: 413 RIEEGDSPLKAAYLGAREVAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVI 472

Query: 807 VAASSSIF 814
               SSI 
Sbjct: 473 ---FSSIV 477



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 62/158 (39%), Gaps = 8/158 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I++   + + +  +F+ +   L  + T+ L     L    L     N+ +   ++ L+G 
Sbjct: 860  ILALGIVFLVLAAQFESYVHPLVIMLTVPLATMGALIGLWLTDQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +      +L    + F+  I ++ ++ L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVEFQQAIIQASSQRLRPILMTGITTAAGAVPLVLSEGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G        + +  GI +A   ++ +  P+   +    
Sbjct: 977  GAETRFVIGVVVLSGITLATFFTLLVI-PVAYSLLARN 1013



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 68/537 (12%), Positives = 149/537 (27%), Gaps = 71/537 (13%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            MR+   +  L  +       +A             P                GS  ++  
Sbjct: 522  MRHPFLVSSLILVALVCSAFLA----------KEVPQEFAPREDR-------GSMFLIVN 564

Query: 61   DEDDFVNGFLQMYSDELRSFL-----------------KKEGIGVFSMRQIQNKITLSFA 103
                    +++ Y DE+ + L                 +  G    +       I L   
Sbjct: 565  GPQGASFEYIESYMDEIENRLMPLVEAGEIKRLLIRAPRGFG-RSANFSNGMAIIVLE-- 621

Query: 104  DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
            D   + +  + +   ++G  S L    +   ++            Q  +       + + 
Sbjct: 622  DWAVRRSAFEIIGD-IRGRLSDL-AGVRAFPVMRQAFGRGVGKPVQFVLGGPSYEELARW 679

Query: 164  MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL---PN 220
             +II ++  +             +    QL    D  R   L  + + +           
Sbjct: 680  RDIIIEKAKENPNLVGLDH--DYNETKPQLRVVIDKDRAASLGVSISHIGRTLESMLGSR 737

Query: 221  NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                    G  +    +GN+       ++  I++    +         +    F +    
Sbjct: 738  LVTTFMRDGEEYDVIIEGNRDNQNTANDLENIYVRSERSKELIPLSNLISIEEFADASQL 797

Query: 281  RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
              +   R                          + +A ++  +++  A      L    L
Sbjct: 798  NRYNRMRA------------------------ITIEANLADGYSLGEALDYLNDLTHEYL 833

Query: 341  PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
            P +  +  +        S +       +  G+V +VL          LV   ++ L  + 
Sbjct: 834  PAEAIVSYKGQSLDYQDSGNSMYFVFILALGIVFLVLAAQFESYVHPLVIMLTVPLATMG 893

Query: 401  TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
             L  L L   +L + S  GI++ +GLA  + IL+ E   +   K      ++    S+  
Sbjct: 894  ALIGLWLTDQSLNIYSQIGIIMLVGLAAKNGILIVEFANQLRDKGVEFQQAIIQASSQRL 953

Query: 461  STIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              I  + IT     V L      G        + +   I ++ F  + ++      +
Sbjct: 954  RPILMTGITTAAGAVPLVLSEGAGAETRFVIGVVVLSGITLATFFTLLVIPVAYSLL 1010


>gi|212635524|ref|YP_002312049.1| acriflavin resistance protein [Shewanella piezotolerans WP3]
 gi|212557008|gb|ACJ29462.1| Acriflavin resistance protein [Shewanella piezotolerans WP3]
          Length = 1030

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 74/645 (11%), Positives = 184/645 (28%), Gaps = 43/645 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISILLIVFGLVA-----FEKLPLREYPNIDPPVV---------SIQTNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++++TL F   R  E  A+ V   + G
Sbjct: 55  SAAVVESRITQLVEDRISGVEGIKHISSSSSDGRSRVTLEFDVGRDIEAAANDVRDRVSG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  + +   +      +  I+      D    + ++ +    R  +D+  + +   
Sbjct: 115 LLNNLPEEAEPPEVQKANGGDEVIMWLNLVSD--QMNTLQLTDYARRYLVDRFSVIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 NMRLGGGKVYAMRVWIDRQALAARNLTVADIEKALRSENVELPAGSVESKERHFTVRLER 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +  +              +           
Sbjct: 233 SFRTS-------------------DDFANLVLAEGDDGYLIKLGDVAKVEIGSEEERITF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +       A  L   +               +      S   
Sbjct: 274 RGNREAMIGLGVSKQSTANTLDVARAANELVDQINPTLPAGMEIKRSYDSSVFIEASVKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFIAMFLVIVVIYLFLGSVRAMLIPALTVPVSLMATFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVVLENIHRRIEEGDSPLKAAFLGAREVAFAVVATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+ M  +++ S   A+++   M   +          ++ ID         
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSIVALTLSPMMCSKVLKPAGQSPWLVRKIDSGMDKLSAG 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +             I I     +             + +G + L V   +      
Sbjct: 514 YRAWLRKAMSHPLLVSSLILIALVSSAYLAKEVPQEFAPREDRGSMFLIVNGPQGASFEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + S ++ ++   +        K  L+R     G S   +  + ++
Sbjct: 574 IESYMDEIENRLMPLVEAGEIKRLLIRAPRGFGRSSNFSNGMAII 618



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 74/205 (36%), Gaps = 13/205 (6%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   +++ +   +   + +    ++ +      +E+ +   + + +  + + +++     
Sbjct: 299 AANELVDQINPTLPAGMEIKRSYDSSVFIEASVKEVYQTLFIAMFLVIVVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T       G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 356 VRAMLIPALTVPVSLMATFIVLYALGYTINLLTLLAMILAIGMVVDDAIVVLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S          E     V T++      +P+    G    +   FA+ M+  ++
Sbjct: 413 RIEEGDSPLKAAFLGAREVAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVI 472

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
               SSI +A  +   +     K A
Sbjct: 473 ---FSSI-VALTLSPMMCSKVLKPA 493



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 85/234 (36%), Gaps = 8/234 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            SNL S++    + Q     +   + ++    D  +    L+ +     E +P   I + +
Sbjct: 783  SNLVSVEEFADASQLNRYNRMRAITIEANLADGYSLGEALDYLNDLTHEYLPAEAIVSYK 842

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                              I++   + + +  +F+ +   +  + T+ L     L      
Sbjct: 843  GQSLDYQDS-GNSMYFVFILALGIVFLVLAAQFESYVHPVVIMLTVPLATLGALIGLWAT 901

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ +   ++ L+G +  + +++ +      +L    + F+D I ++ ++ L   + 
Sbjct: 902  GQSLNIYSQIGIIMLVGLAAKNGILIVEFAN---QLRDKGVEFKDAIIQASSQRLRPILM 958

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T +      +P+ +    G        + +  GI +A   ++F+       +  
Sbjct: 959  TGITTAAGAIPLVMAQGAGAETRFVIGVVVLSGISLATFFTLFVIPVAYSLLAK 1012


>gi|326424283|ref|NP_762686.2| protein-export membrane protein SecD [Vibrio vulnificus CMCP6]
 gi|319999669|gb|AAO07676.2| protein-export membrane protein SecD [Vibrio vulnificus CMCP6]
          Length = 614

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 158/513 (30%), Positives = 272/513 (53%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     N I LGLDLRGG   +L VD D   +    + SDE+R+ L+ 
Sbjct: 114 ISFSYVSVAPQWLSDMGFNPIKLGLDLRGGVQFLLNVDVDKAFDEQRDVLSDEIRAMLRT 173

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +    +R      T   A         +KV+ +L+            N  V T    +
Sbjct: 174 EKLRGVQVRNTD---TAQLAVQSDNAMALEKVSNYLRS--------NYPNWQVRTHSDSL 222

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  S     +  +  ++Q+++I+R RI+++GI+E+ +QR G+H I I+LPG QDP++ +
Sbjct: 223 EVKPSDAYAAEFQTTTLQQNLKIMRGRIEELGITEALVQRQGAHSIRIELPGVQDPAQAK 282

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F+ V   +  +        L+D+DG   ++E +  ++G H+  A A  D 
Sbjct: 283 NVIGATASLAFYSVKSPSDARSG--DDLVLQDADGRSVVLEKRPVLTGEHIVNARAGVDK 340

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+   +    +     + +    Q+ 
Sbjct: 341 MGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYTTQENGDIARSERVISVATIQSQ 400

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  +++ A  LA +LRAGSL   ++IVEER +GA LG+++I  G  A+  G+
Sbjct: 401 LGSQFRITGAGSMDEAQQLALLLRAGSLTAPVSIVEERTIGASLGAENIQNGFAALALGM 460

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 461 GLTLTFMALWYRRLGWVANVALVANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 520

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +++ ERI+++ R+ +S+  ++D GF  A++TI D+NIT +I  VVL+  G G ++GFA+T
Sbjct: 521 VIIFERIKDKMREGRSLAQAIDSGFDSAFATILDANITTMITAVVLYAIGNGPIQGFALT 580

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMFT +   RAM+  +      +++ 
Sbjct: 581 LGLGLLTSMFTGVFASRAMINLVWGKDSRRNVR 613



 Score =  107 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 82/207 (39%), Gaps = 6/207 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    +I     +G  +  E I+ G   + +     L ++ + +
Sbjct: 412 SMDEAQQLALLLRAGSLTAPVSIVEERTIGASLGAENIQNGFAALALGMGLTLTFMALWY 471

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L+ ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 472 R-RLGWVANVALVANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 530

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      S    ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 531 MRE---GRSLAQAIDSGFDSAFATILDANITTMITAVVLYAIGNGPIQGFALTLGLGLLT 587

Query: 808 AASSSIFIAAPIL-LFIYDWRAKNARI 833
           +  + +F +  ++ L       +N R+
Sbjct: 588 SMFTGVFASRAMINLVWGKDSRRNVRV 614


>gi|153800882|ref|ZP_01955468.1| protein-export membrane protein SecD [Vibrio cholerae MZO-3]
 gi|124123592|gb|EAY42335.1| protein-export membrane protein SecD [Vibrio cholerae MZO-3]
          Length = 612

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 151/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRT 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   S++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVSVQAMGND---AFEVKTEQPQALSHVRKYLQ--------ENYRGWEIRQGLDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 611



 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 586 SMFSGVFASRALINLVWGRDTRR 608


>gi|221066621|ref|ZP_03542726.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Comamonas testosteroni KF-1]
 gi|220711644|gb|EED67012.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Comamonas testosteroni KF-1]
          Length = 1055

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/582 (13%), Positives = 166/582 (28%), Gaps = 42/582 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           L+++P   P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGALSI-----KLLPLEQYPEIAPP-------------RVTIGAQY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S    Q +ITL+FA     +    +V  
Sbjct: 50  TGASAETVENSVTQIIEQQIKGIDNMLYMSSTSNASGQARITLTFAPGTNVDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +QG  ++L    K   +      +  +V            A++    I    +D IG  
Sbjct: 110 KIQGAVNRLPDSVKTRGVFINKGGQDFLVTYSFYSPDEAVTAVDIGDYINSNLVDIIGRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP+++ +     + +S      N        G      + 
Sbjct: 170 EGVGDINVFGTP-YAMRIWMDPAKMEKYGLIPSDLSSALNAQNAQVSAGQLGALPAVQNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +    +                 +      +
Sbjct: 229 QLNATITARTKL-------------KTVQQFENIVLKSSNDGSVVTIKDVARVELGADNL 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L+          V   +      
Sbjct: 276 SIQAKLNGMPGAGMGIILADGANAMAVSDAVAAKLAELKPFFPNQIDYFVSSDSTPFVRA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S           LV+IV+F+ +   +  L+   ++ + ++ T  +LS+ G ++   ++
Sbjct: 336 SISEVVHALGEAMVLVVIVMFVFLQNFRATLIPAIAVPVVLLGTFGVLSVAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +   +S   +           +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHETGKSPKEATRQSMKEITPALVGIGVTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+F A+++  A+   +      +            
Sbjct: 456 MAFFGGSTGVIYRQFSITIVAAMALSVFVALTLTPALCATL-LKAPDRGHGDGHERPIRS 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
               I  +F R        +      ++           + F
Sbjct: 515 GVLGINDRFFRWFNRNFDAAANRYQSTVAFSLGRTKRMMLIF 556



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V           I  +        +  +     +++A +  +     ++    P 
Sbjct: 260 VTIKDVARVELGADNLSIQAKLNGMPGAGMGIILADGANAMAVSDAVAAKLAELKPFFPN 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I + +  +  + + ++I +++  + +   L     + + +  T
Sbjct: 320 QIDYFVSSDSTPFVRASISEVVHALGEAMVLVVIVMFVFLQNFRATLIPAIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ++ G   N   + A++  IG  V+D +VV + +     ++ T  S ++   +S+ E
Sbjct: 380 FGVLSVAGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHETGKSPKEATRQSMKE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V   +      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 ITPALVGIGVTLSAVFVPMAFFGGSTGVIYRQFSITIVAAMALSVFVALTLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 54.3 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 79/263 (30%), Gaps = 9/263 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      +  V  N+   +     +      G      ++G   +    +   G S    
Sbjct: 786  MLPTDIAKWTVRNNKGEMVPFGAFSKTYWAYGSPQLLRYNGSPAYEFEGRAAAGISSGTA 845

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                    K              +   +   +      + ++   + +     +   W  
Sbjct: 846  METVEDILKKLPNGIAYEWTGASLQERQSGAQAPMLYAISILFVFLCLA---ALYESWTV 902

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  +  + L +   L      G+  ++     +LT +G +  + +++ +     ++L  
Sbjct: 903  PLSVMLAVPLGVVGALLATYTRGLTNDVYFQVGLLTTVGLAAKNAILIVEFA---VQLQE 959

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAA 809
                  D   +++   L   + TS+A    V+P+      G     +    +  G+V + 
Sbjct: 960  QGKKLFDATVEAVRLRLRPILMTSLAFGFGVIPLAIGTGAGAGGRNAIGTAVLGGMVAST 1019

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
               IF+     L +  W    +R
Sbjct: 1020 VLGIFLVPVFFLLVRSWFKSRSR 1042


>gi|262168541|ref|ZP_06036237.1| protein-export membrane protein SecD [Vibrio cholerae RC27]
 gi|262023070|gb|EEY41775.1| protein-export membrane protein SecD [Vibrio cholerae RC27]
          Length = 507

 Score =  189 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 151/513 (29%), Positives = 260/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 7   ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRT 66

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   S++ + N    +F     +      V  +LQ        +  +   +     ++
Sbjct: 67  ERLRGVSVQAMGND---AFEVRTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 115

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 116 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 175

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 176 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 233

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 234 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 293

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 294 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 353

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 354 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 413

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 414 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 473

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 474 LGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 506



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 305 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 364

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 365 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 423

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 424 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 480

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 481 SMFSGVFASRALINLVWGRDTRR 503


>gi|300310690|ref|YP_003774782.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
 gi|300073475|gb|ADJ62874.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1049

 Score =  189 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/689 (10%), Positives = 178/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G++  L        + ++P+  P                    + 
Sbjct: 8   RPIFAWVLAIIVMLAGIVSVL-----TLPIAQYPAIAPPAIAI-------------TANY 49

Query: 63  DDFVNGFLQMYSDELR----SFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L+    ++       L +      +     +  ITL+F +    +    +V  
Sbjct: 50  PGASAKTLEDTVTQIIEQKMKGLDRLSYMASTSESSGSVTITLTFENGTNPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  + ++  +  T      + +     +       + S  +     D I   
Sbjct: 110 KLSLATPLLPSEVQQQGITVTKSATNFLNVLAFTSEDGSMSGSDLSDYVAANVQDAISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     T   +       N        G     ++ 
Sbjct: 170 EGVGDTTLFGSQ-YAMRIWLDPNKLNSYGLTPLDVKNAIQAQNAQVSSGQLGGLPAAENQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +     G  +        I       
Sbjct: 229 QINATITAQTRL-------------RTADQFQNIVLRTLTGGAQVKLRDVARIELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T++      A L                      
Sbjct: 276 TSVGRYNGKPAAGLAIKLATGANALDTVKAIDKRVAELEKFFPTGMKVQKPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +L++ G T+   ++
Sbjct: 336 SIEEVVRTLIEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAVFGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +      +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMSEEGLPPKQATRKSMGQISGALVGVALVLAAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSI 523
           + FF G      R F+IT+  ++ +S+  A+ +  A+   +++                 
Sbjct: 456 MAFFSGSTGVIYRQFSITIVSAMTLSVLVALVLTPALCATLLKPAAKGHALATTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R   +    ++L ++     +         + +G +   +
Sbjct: 516 NRQFDRSNIRYQGIVRHMLGRGWRYMAAYAVLLALVVAGFMKLPVGFLPDEDQGTLFAIM 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +     +  ++   +  Q       F V      G           +K    
Sbjct: 576 QLPSGATKARTDEVIRQVEQHFLVDQKEAVSGVFAVSGFSFAGSGQNMGFAFIKLKPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              P  ++ +           +    +  
Sbjct: 636 RKGPGLSVTDVAAKAGAAFANIRDARVFA 664



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 89/252 (35%), Gaps = 6/252 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +     V L  V       +      +        L        +++   + ++    +
Sbjct: 253 TLTGGAQVKLRDVARIELGSESYTSVGRYNGKPAAGLAIKLATGANALDTVKAIDKRVAE 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           + +  P               R  I + +  +I + + + + +++  + +   L     +
Sbjct: 313 LEKFFPTGMKVQKPYDTTPFVRISIEEVVRTLIEAVVLVFLVMYLFLQNFRATLIPTIAV 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G  A+FG   N   + A++  IG  V+D +VV + +     +    +  +  
Sbjct: 373 PVVLLGTFGVLAVFGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKQA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             KS+ +  G  V  ++      +PMA + GS       F+I +   + ++   ++ +  
Sbjct: 431 TRKSMGQISGALVGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTLSVLVALVLTP 490

Query: 818 PILLFIYDWRAK 829
            +   +    AK
Sbjct: 491 ALCATLLKPAAK 502



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 75/239 (31%), Gaps = 8/239 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S   +      S +         + +        A +     + +     +P        
Sbjct: 800  SAFSTASWTSGSPRLERYNGVPSMEILGMALPGAASSGEAMAIVEAALAKMPPGIGYEWT 859

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT-KTLGFFALF 714
             +  +      + GI+  +   I  L    +   W      I  + L +    LG   L 
Sbjct: 860  GLSLQEKASSGKTGILYGVSILIVFLALAALYESWAVPFSVILVVPLGVFGALLGAM-LT 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                ++     +LT IG +  + +++ +  +    LY    S  +   +++   L   + 
Sbjct: 919  WKMNDVYFQVGLLTTIGLACKNAILIVEFAKD---LYEHGKSLVEATMEAVRMRLRPILM 975

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            TS+A  + VLPM +    G     +    +  G++     ++F      + I     + 
Sbjct: 976  TSLAFILGVLPMVLGSGAGAGAQHALGTAVIGGMLSGTVLAVFFVPLFFVIIMTLFGRK 1034


>gi|256828493|ref|YP_003157221.1| protein-export membrane protein SecF [Desulfomicrobium baculatum
           DSM 4028]
 gi|256577669|gb|ACU88805.1| protein-export membrane protein SecF [Desulfomicrobium baculatum
           DSM 4028]
          Length = 357

 Score =  189 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 95/353 (26%), Positives = 159/353 (45%), Gaps = 49/353 (13%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANR 587
             F +I     I F+  R +   +S    +     L   G   YGIDF GG  + V  ++
Sbjct: 1   MSFEIIKRDTNIDFVGMRKYAYVLSAALLLAGFLSLLVKGGPQYGIDFAGGFNVQVKFSQ 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IV 646
            V+L  +R  L+S  +  +  Q+F    +  V L+    +  A      +     +    
Sbjct: 61  SVELDKIRMALDSPALTGLVVQDFGDVGDNEVLLRASFSEQSANEVREAVESGLESAFPG 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF------------------ 688
               IQ  E+VGPK+  +L  K +  +  + + +  YI  RF                  
Sbjct: 121 VTHEIQRLEMVGPKVGADLREKALEAIFYAVLLIATYISGRFEQKWMVAGLMAAGLASVV 180

Query: 689 ----------------------------KWYFALGAITTLILDITKTLGFFALFGIEFNL 720
                                       +  +ALGAI  LI D+   LG F+L   + +L
Sbjct: 181 YVLDLLNAPTSLSVIVATIAALVLCVVLRLKYALGAIVALIHDVMIPLGLFSLLNKDVDL 240

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T +AA+LT++GYS+ND +++YDR+R+N++   +  S   +I+KS+N+T+ R++ T+   F
Sbjct: 241 TIIAALLTIVGYSLNDTIIIYDRIRENIRAKVS-PSLDVVINKSVNQTMSRTLITAGTTF 299

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++V  + ++GG VI  FA+ M  G+V    SS+F+ APIL F         R+
Sbjct: 300 VAVFSLYIFGGGVIHDFALTMLVGVVAGTYSSVFVGAPILAFFKPRIDLEERV 352


>gi|209550684|ref|YP_002282601.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536440|gb|ACI56375.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1061

 Score =  189 bits (478), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/590 (12%), Positives = 169/590 (28%), Gaps = 39/590 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +   +G +        Q  + ++P   P               +V+    
Sbjct: 10  RPIFAAVISILFLVVGGIA-----YTQLPVSQYPEIAPPT-------------IVVRTSY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     +    +T++F      + +   V  
Sbjct: 52  PGADPQTIADTVSTPLEQQINGVEDMLYMSSYSSADGAMSLTITFKLGTDLDKVQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + T       +++            +  S     +  D +   
Sbjct: 112 RVSIALPRLPEEVQRLGVTTDKSSPDLMMVVHLLSPSHRYDQLYVSNYARNRIRDVLVRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     T+  +       N    G   G   +   +
Sbjct: 172 DGVGDVQIFGERQYSMRIWLDPEKLSAYGMTSDDVVSALRDQNVQVSGGKIGAPPVTGKN 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y V      S +                   I       R         I       
Sbjct: 232 AFEYTVRTDGRFSDVREFRY-------------VIVKSTGAGRLVQLQDVARIELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +   T      L   +           +          
Sbjct: 279 VTNSYLNNDPAVALGIFARPGTNALDTAHQVQTLMKDISQNFPEGLEYRIVYDTTEFISD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T A  A LV IV+ + +   +  ++   +I +++I T A+L   G +L + ++
Sbjct: 339 SISEVYRTIAEAAILVAIVVLVFLQSWRTAIIPIVAIPVSLIGTFAILLAFGFSLNMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  +   +  +      + +   ++  +   V  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNLARGMTPKQASHVTMDEVGTAVVAISLVLIAVFVPT 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   R FA+T+ ++  IS   ++++  A+   +++    ++   N  +RF   
Sbjct: 459 AFIPGISGQFYRQFAVTISVTTAISALNSLTLSPALAGILLKTHDHETRRANIATRFGRG 518

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                 +       G   ++   + S   L    + +         +   
Sbjct: 519 LADGFNRGFDRMSSGYSWTVRHLVSSWVGLTAAMIAFVCLLGATWYMSTR 568



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/436 (13%), Positives = 132/436 (30%), Gaps = 20/436 (4%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
                   AG          +  +V    +    + +    + +      Y  +       
Sbjct: 614  VGNAVQFAGFSGATFTNASNAGVVFVPFKSFAEREEGGENA-NKIIGELYGKLQSIQEAF 672

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +IA       G G   GF + +       M   + + R MM      + +  +       
Sbjct: 673  IIAIPPPSVRGVGNSGGFKMQISDLENADMTRVLGLARQMMGAAATTEGLTGVFTTFSDA 732

Query: 531  FFLIPDCIAIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   I     R            +SI   +  +      G  Y +  +   Q  +  
Sbjct: 733  SPQYFLAIDRDKARFLNVPIPNIFNALSINLGVAYVNDFNAFGRVYQVRAQADRQYRMDR 792

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGE----KNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               + L V  +    + +G +            + + + +      +            K
Sbjct: 793  EDILALKVRSATGALVPLGTLMDIQDASGPALVQRYNMYVSVPLQGNPTPGTSTGDAIAK 852

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAI 697
            +  +      Q T     +++ +    G   V I +   + +++ +      W   L  I
Sbjct: 853  MEALAAKILPQGTTFEWTELAYQETHTGNTAVYIFALSVVFVFLALAAQYESWVLPLAII 912

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
              + L +   L   +L G++ N+     ++ LIG +  + +++ +  R   +      S 
Sbjct: 913  LIVPLAVLAALIGVSLRGMDNNVLTQIGLIVLIGLAAKNAILIVEFAR---QAEDEGKSP 969

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             +   ++ +  L   + T+ A    VLP+A+    G  +  S    +  G++      +F
Sbjct: 970  VEAAIEASHLRLRPILMTAFAFIFGVLPLAIATGPGAEMRQSLGTAVFSGMLGVTIFGLF 1029

Query: 815  IAAPILLFIYDWRAKN 830
            +     + +  WR K 
Sbjct: 1030 LTPVFYVVLRGWRRKQ 1045



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 80/203 (39%), Gaps = 9/203 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +     +++ + +   E +    + +T         E+ R      I+ AI +L+++ 
Sbjct: 304 DTAHQVQTLMKDISQNFPEGLEYRIVYDTTEFISDSISEVYRTIAEAAILVAIVVLVFLQ 363

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  A+  I  + + +  T      FG   N+  +  ++  IG  V+D +VV + + 
Sbjct: 364 ---SWRTAIIPIVAIPVSLIGTFAILLAFGFSLNMLTLFGLVLAIGIVVDDAIVVVENVE 420

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +N+      ++ +     +++E     V  S+      +P A      G     FA+ ++
Sbjct: 421 RNLA---RGMTPKQASHVTMDEVGTAVVAISLVLIAVFVPTAFIPGISGQFYRQFAVTIS 477

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
               ++A +S+ ++  +   +  
Sbjct: 478 VTTAISALNSLTLSPALAGILLK 500


>gi|227824025|ref|YP_002827998.1| hydrophobe/amphiphile efflux-1 HAE1 [Sinorhizobium fredii NGR234]
 gi|227343027|gb|ACP27245.1| hydrophobe/amphiphile efflux-1 HAE1 [Sinorhizobium fredii NGR234]
          Length = 1048

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/669 (12%), Positives = 186/669 (27%), Gaps = 38/669 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++       P   + ++P   P          +   +       
Sbjct: 8   RPIFAWVVAIFIMVAGIIAI-----PLLPVSQYPDVAPP---------QISINTTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
                  +    ++  + ++       +     + +I  +FA        +  +   +Q 
Sbjct: 54  SQDTYQSVTRLIEDELNGVEGLLYFESTSSASGSVEINATFAPGTDPSQASVDIQNRVQR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    K+  +         +++           AI     + R  + +I   +   
Sbjct: 114 VEPRLPDSVKQQGVQVDEAGSGFLLIISLTSTDGSMDAIGLGDYLSRNVLSEIQRVQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++  L  T A ++      N        G +    +     
Sbjct: 174 RAQMF-ATERSMRVWLDPDKMLGLNLTAADVTAAVQAQNAQIASGSIGAQPNPITQQISA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K ++S                +    +                 I           
Sbjct: 233 PVVIKGQLS-------------SPEEFGAIVLRANADGSAVRLRDVARIEIGGESYSFST 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T E        L     P     +          S   
Sbjct: 280 RLNGKPSAAIAVQLSPSGNAISTSEAIKARMDELAEFFPPGLEYSIPYDTSPFVAVSIQK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   ++ ++    + + ++ T A++  +G ++ + ++ G+V
Sbjct: 340 VVETLVEAVALVFLVMFLFLQNIRYTIIPTLVVPVALLGTCAVMLAMGFSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  +   +      +    +    +      + + FF
Sbjct: 400 LAIGILVDDAIIVVENVERIMSEEGLTPKEATRKAMKQITGAVIGITLVLASVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F++TM +SIL S F A+S+  A+         +K +              
Sbjct: 460 PGAVGVIYRQFSLTMVVSILFSAFLALSLTPALCASF-----LKQVPKGHHHAKRGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R      G+       +   +  +    G      +QL        D   V   
Sbjct: 515 FNRSFDRTSRGYTGVVGRLVTRAGRFMIIYLALLGGLAWAFMQLPSSFLPDEDQGFVIVM 574

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           ++       +      E+   +  Q Q  D++                +   T+++    
Sbjct: 575 MQLPSEATGNRTTEVIEQAESIFGQEQAVDTIVAINGFSFFGTGQNAGLAFVTLKDWSER 634

Query: 658 GPKISRELI 666
               + + I
Sbjct: 635 DADNAAQSI 643



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 88/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    S +        +       G++++ +  ++    ++ E  P 
Sbjct: 260 VRLRDVARIEIGGESYSFSTRLNGKPSAAIAVQLSPSGNAISTSEAIKARMDELAEFFPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            I+K +  ++ +   + + +++  +   + +     + + +  T
Sbjct: 320 GLEYSIPYDTSPFVAVSIQKVVETLVEAVALVFLVMFLFLQNIRYTIIPTLVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  V+D ++V + +     +    ++ ++   K++ +
Sbjct: 380 CAVMLAMGFSINVLTMFGMVLAIGILVDDAIIVVENV--ERIMSEEGLTPKEATRKAMKQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +  ++      +PMA + G+V      F++ M   I+ +A  ++ +   +
Sbjct: 438 ITGAVIGITLVLASVFIPMAFFPGAVGVIYRQFSLTMVVSILFSAFLALSLTPAL 492



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/394 (9%), Positives = 116/394 (29%), Gaps = 18/394 (4%)

Query: 435  NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
               +  ++   +    +      RA   +         A       G G   GF+  +  
Sbjct: 623  LAFVTLKDWSERDADNAAQSIAGRATMAMSQIKDAISFALSPPAIQGLGTTGGFSFRLQD 682

Query: 495  SILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554
               +           ++    + K +  +    +     +   I  +             
Sbjct: 683  RAGLGETALAEARDQLLGLAAQSKVVAGVRFEGMPDAAQVSVNIDREKANTFGVTFADIN 742

Query: 555  LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                 ++   + +        +          R     ++  N+ +   G +    F   
Sbjct: 743  STISTNLGSSYVNDFPNAGRMQRVTVQADEGQRMQTADLLNLNVRNSNGGMVPLSAFADI 802

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP---------KISREL 665
            +      Q    +     R+        +    ++ ++      P         +  +E+
Sbjct: 803  EWVKAPTQTVGYNGYPAVRISGEAAPGYSSGDAIAEMERLVAQLPPGFGYEWTGQSLQEI 862

Query: 666  IRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
                   ++I    +L+++    +   W   +  I  + L +   +    +  +  ++  
Sbjct: 863  QSGSQAPLLIGLSCLLVFLCLAALYESWSIPVAVIMVVPLGVIGAVLAVMMRDMPNDVYF 922

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ +IG S  + +++ +  ++   L     S  D   ++++      + TS+A  + 
Sbjct: 923  KVGLIAIIGLSAKNAILIIEFAKE---LREQGKSLIDATLEAVHLRFRPILMTSLAFTLG 979

Query: 783  VLPMAVWGG---SVIGSFAIPMAFGIVVAASSSI 813
            VLP+A+  G       +    +  G++ A   +I
Sbjct: 980  VLPLAIATGASSGSQRAIGTGVMGGMISATVLAI 1013


>gi|28198112|ref|NP_778426.1| preprotein translocase subunit SecD [Xylella fastidiosa Temecula1]
 gi|28056172|gb|AAO28075.1| protein-export membrane protein SecD [Xylella fastidiosa Temecula1]
          Length = 621

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 146/520 (28%), Positives = 250/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  L+VD+   +N  +  + +E+RS L  + I
Sbjct: 110 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSKRI 169

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           G   + R+  N I ++F D          +               +  L  + +   +  
Sbjct: 170 GFRMVERRPDNTIRVTFDDDAHLNEARMVLFKE------------QVGLSYSVSGNTLIA 217

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +S+N + Q+ S A+EQ++  +R RI+++G++E  IQR G  RI+++LPG QD +  ++L
Sbjct: 218 RVSENELRQIASGAVEQNLTTLRNRINELGVAEPIIQRQGDDRIVVELPGVQDTAEAKRL 277

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  ++ +    G                  L+  +V +SG  +  AT 
Sbjct: 278 IGATATLEFRGVVDGDAYEAVRTGNVPPEARVYYIRGTNQPVLLNKRVIVSGDEMVNATV 337

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
             D      V     +  G R                      T   +       +  + 
Sbjct: 338 GVDENGMPAVNVTLSNAAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKE 397

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A   GK   +       A  L+ +LRAGSL   ++ VEE  +G  LG++++ 
Sbjct: 398 EALSPTRIAGVFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVE 457

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G++   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 458 RGVTAVVFSFLFTLVFFTIYYRMFGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLAL 517

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A STI D+N+T LI  V L+ FG 
Sbjct: 518 SVGLSVDANVLINERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGT 577

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ R++   I   +    
Sbjct: 578 GPLKGFALTMIIGIFASMFTAITVSRSLSALIYGTRNNLK 617



 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 93/267 (34%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +           + V+    +    +    E   +              +    ++  
Sbjct: 357 QRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPTRIAGVFGKNFRTT 416

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         +   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 417 GLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTI 476

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F +     L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 477 YYRM-FGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 535

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++     +  R  I    ++     +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 536 ELR---HGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIF 592

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I ++  +   IY  R     +
Sbjct: 593 ASMFTAITVSRSLSALIYGTRNNLKSL 619


>gi|220903589|ref|YP_002478901.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219867888|gb|ACL48223.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 1067

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 62/583 (10%), Positives = 165/583 (28%), Gaps = 33/583 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R      ++  +I  +G L      +    + ++P  +P               +V   
Sbjct: 11  LRRPILSAVISIVITLVGALA-----MRALPVAQYPDLVPPTV---------NVSVVYPG 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFS--MRQIQNKITLSFADSRFKENIADKVTLF 118
              + +   +    +   + ++       +         I + F+     +     V   
Sbjct: 57  ASAETIASTVLAPLEVNINGVENMLYMTSTAASGSGSGSINVYFSLGTDPDMALVNVNNK 116

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +    + L    ++  +         +++            +  +       +D +   E
Sbjct: 117 VNLAQTVLPEAVRRQGVSVLKRSPAMLLVFSYFSPDGRYDQVFINNWAQINVVDALKRVE 176

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                     +   +     P +L +   +  +++      N+       G     DS  
Sbjct: 177 GVGDVTIFGSMDYAMRIWLQPDKLAKYGVSVNEVAAAIQEQNSQYAPGRLGEMPSPDSTQ 236

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + ++ +  +                 +    I      +          +        
Sbjct: 237 LTWQIDTQGRL-------------VTPEEFGEIIVRSGPDSAMLRLKDVARVELGGKDYS 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                   V            +   T +      A +           +        L S
Sbjct: 284 VTSRYNGMVARMGAVYLLPGANAIATGDRVLDKLAEIGLTMPDGLDYTILVNTNDFVLES 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV IV+++ +   +  ++   ++ +++I T A L   G T+   ++ 
Sbjct: 344 IREVVSTLVEAMILVFIVVYVFLQSWRATIIPCVAVPVSIIGTFAGLYAFGYTINTLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IG+ VD  I+V E +             +     +   + I    +      + +
Sbjct: 404 AMVLSIGIVVDDAIVVLENVERIMTTEHLPPKEATAKAMNEVTAPIVAIVLVLCAVFIPV 463

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F G   G   + FAIT+ +S+++S   A+++  A+   +++          P + F   
Sbjct: 464 SFMGGLAGQMYKQFAITISVSVVLSGVVALTLTPALCALLLKPHDHSYKPPKPFAWFNRF 523

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
            D +   ++    +    S+        ++      + +   G
Sbjct: 524 FDSVTTNYVNIVNYLKASSLRALSLFAVMILICVWLFRVVPGG 566



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 673 VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++ + I + I +++    W   +     + + I  T      FG   N   + A++  IG
Sbjct: 351 LVEAMILVFIVVYVFLQSWRATIIPCVAVPVSIIGTFAGLYAFGYTINTLTLFAMVLSIG 410

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
             V+D +VV + +     + T  +  ++   K++NE     V   +      +P++  G 
Sbjct: 411 IVVDDAIVVLENV--ERIMTTEHLPPKEATAKAMNEVTAPIVAIVLVLCAVFIPVSFMGG 468

Query: 791 --GSVIGSFAIPM 801
             G +   FAI +
Sbjct: 469 LAGQMYKQFAITI 481



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 62/147 (42%), Gaps = 8/147 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +++ W   L  +T +   +   L      G+  ++    A++TL+G 
Sbjct: 890  VLALVMVFLILAAQYESWSLPLSVLTAVPFGVFGALLATWARGLSNDVYFQVALVTLVGL 949

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +   +  +      S       +        V TS+A  +  +P+A+    
Sbjct: 950  AAKNAILIVEFAVEAWRG---GRSLDAAASFASRLRFRPIVMTSLAFILGCVPLAISTGA 1006

Query: 790  GGSVIGSFAIPMAFGIVVAA-SSSIFI 815
            G +   +    +  G++ A   +++F+
Sbjct: 1007 GANSRHALGTAVIGGMLAATCIATLFV 1033


>gi|320184065|gb|EFW58885.1| RND efflux system, inner membrane transporter CmeB [Shigella
           flexneri CDC 796-83]
          Length = 569

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 63/552 (11%), Positives = 152/552 (27%), Gaps = 46/552 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   +       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTNDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +     +K +         
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-----LKPVSAEHHENKG 509

Query: 533 LIPDCIAIQFMR 544
                    F  
Sbjct: 510 GFFGWFNTTFDH 521



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|323700265|ref|ZP_08112177.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio sp. ND132]
 gi|323460197|gb|EGB16062.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio desulfuricans ND132]
          Length = 1055

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/690 (11%), Positives = 186/690 (26%), Gaps = 49/690 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I   GLL      L    + ++P   P             + + +  +
Sbjct: 7   KRPIFAWVIAIVIMLAGLLA-----LDTLSISQYPDIAP-------------TSVRVSCN 48

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      +   +        +   S    Q+ ITL+F ++   +    +V 
Sbjct: 49  YPGADAKTVENSVTKVIEQGMTGIDNLDYMTSTSTSTGQSDITLTFTNAANPDVAQMQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ V S+L    + N +  T      +++           +++ +  +     D +  
Sbjct: 109 NKLQQVTSQLPDVVESNGVSVTKSSASFLMVIGFVSTDGSMSSVDIADYVDSSLNDTLKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    +P +L         ++      N        G       
Sbjct: 169 VEGVGDTQLFAS-AYAMRIWLNPDKLAGYSLMPGDVAAAIQAQNTQISAGQLGGLPSVKG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +    I                 +      
Sbjct: 228 QQLNATITARSRL-------------QTPEQFRNIIIKSSANGSIVRLSDVAEVELGAES 274

Query: 297 VLDGRVLTA-PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                +                  +   T E      A L          +         
Sbjct: 275 YTTNGLYNGTMPSAGLAIKLATGANAIQTAEAVEAAIAKLSPTFPRSIKVVYPYDTTPFV 334

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S S    T      LV +V+ + +   +   +   ++ + ++ T A+LS+ G ++   
Sbjct: 335 KLSISDVIETLIEAIILVFLVMLIFLQNIRATFIPTIAVPVVLLGTFAVLSIAGYSINTL 394

Query: 416 SIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IGL VD  I+V E +      +  S   +           +           
Sbjct: 395 TMFAMVLAIGLLVDDAIVVVENVERVMATEGLSPREATRKSMKEISGALVGIATVLSAVF 454

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-------KKMKSID 524
           V + FFGG      R F++T+  ++++S+  A+ +  A+   I+R           +  +
Sbjct: 455 VPMAFFGGSVGVIYRQFSLTIVSAMILSVLVALILTPALCASILRPVNHHKPLCCFRWFN 514

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                      D  A    R     +   +L +  S            ++ +G +   V 
Sbjct: 515 RWFDRSTDAYHDGTAWILRRTGRLLIVFLLLIAAMSWMFAKLPSSFLPMEDQGILIASVQ 574

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                     +  ++ +    ++ +    E  F        G           +K     
Sbjct: 575 LPVGATQERTQRVMDKVSSYFLNHEKEAVEGVFTTVGFSFSGAGQNVGIAFIRLKPFEER 634

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
             P  + Q           ++    I  + 
Sbjct: 635 HEPGLSAQAVAGRAMGAFSQMREARIFALA 664



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 75/194 (38%), Gaps = 6/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                +E    K++   P S             +  I   I  +I + I + + + I  +
Sbjct: 302 QTAEAVEAAIAKLSPTFPRSIKVVYPYDTTPFVKLSISDVIETLIEAIILVFLVMLIFLQ 361

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                      + + +  T    ++ G   N   + A++  IG  V+D +VV + +    
Sbjct: 362 NIRATFIPTIAVPVVLLGTFAVLSIAGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            + T  +S R+   KS+ E  G  V  +       +PMA +GGSV      F++ +   +
Sbjct: 420 VMATEGLSPREATRKSMKEISGALVGIATVLSAVFVPMAFFGGSVGVIYRQFSLTIVSAM 479

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 480 ILSVLVALILTPAL 493



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 70/246 (28%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +                 + ++G     ++ Q   G S              
Sbjct: 787  VRNDTGGMVPFASFASGRWTYDSPRLERYNGSSAVEIQGQAAQGVSSGDAMKEVARIIGE 846

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  + +     +   W      I ++ +
Sbjct: 847  LPAGFNLQWTGLSAQEELSGNQAAPLYALSILVVFLCLA---ALYESWSIPFAVILSVPV 903

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    LFG   ++     +LT IG +  + +++ +     +          +   
Sbjct: 904  GIFGALLAATLFGQSNDVYFKVGLLTTIGLAAKNAILIVEFA---VAQQEHGAGVIEATL 960

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +    L   + TS A  + V P+AV    G     S  I +  G++ A    IF    +
Sbjct: 961  TAARLRLRPILMTSFAFILGVTPLAVASGAGSGAQNSVGIGVMGGMIAATILGIFFIPML 1020

Query: 820  LLFIYD 825
             + +  
Sbjct: 1021 YVALRK 1026


>gi|157738422|ref|YP_001491106.1| Acr family multidrug efflux protein [Arcobacter butzleri RM4018]
 gi|157700276|gb|ABV68436.1| multidrug efflux protein, Acr family [Arcobacter butzleri RM4018]
          Length = 1055

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 79/639 (12%), Positives = 190/639 (29%), Gaps = 38/639 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I  +G+L           ++++P   P                       
Sbjct: 10  PIFAWVISLIIMLLGILSI-----KNLAVEQYPDIAPPTIE---------IRATYSGATA 55

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   +    ++    L        +     + I + F      +    +V   +Q + 
Sbjct: 56  KAIENSITQIIEQELRGLDGLLYFSSTSGSSTSTINVVFEKGIDPDIAQVQVNNKVQQIL 115

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +L  D +K  +     +   +++   + +   S   + S  +I    D +   +     
Sbjct: 116 PRLPEDVRKEGVSVVKAQTDYLMILSIHDELGKSSENDISDYMISNLKDGLARVDGVGGV 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                    +    DP +L+      + ++    + N    G   G R   +       V
Sbjct: 176 ELFGA-EYAMRIWLDPKKLKSYNLMPSDINKEVTIQNTQASGGSIGARPHLNGQELNADV 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             + ++  +              +    +                 +            L
Sbjct: 235 VSRTKLENVR-------------EFENIVIKSNNAGSNVLLSDVAKVEIGSQDYSFISKL 281

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                +       +  +   T +      +   +                    S     
Sbjct: 282 NGYQASGIGIKLSSGANAIETAKKVKEYISSFESYLPSGYKISYPYDTTIFVEESIKEVV 341

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T      LV+IV+F+ +   +  ++   ++ + ++ T A+L+ LG ++   ++  +VL 
Sbjct: 342 KTLFEAIFLVVIVMFVFLNSWRATIIPAIAVPVVLLGTFAILNFLGFSINSLTMFAMVLS 401

Query: 424 IGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           IGL VD  I+V E +    ++    +   ++        + I  + + +++   ++FF G
Sbjct: 402 IGLLVDDAIVVVENVERNMKEKNLCAKEATIIAMSEITSALIGVATVLSVVFLPMIFFSG 461

Query: 482 GG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF------L 533
                 + FA+T+  S+L+S+  AI++  A+    ++          P+  F        
Sbjct: 462 STGIIYKQFAVTIISSMLLSVIVAITLSPAICATFLKPHSPSEKQTGPIVWFNNKFDSLT 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               ++I     R      + +  I    L F       +  +    L +    PV  S 
Sbjct: 522 RKYKMSIFNFINRPLKWMTAYIVIIAVTILFFLKLPTGFVPSEDQGDLMIQFTLPVGASA 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            RS      I D   +      N +  +         Q 
Sbjct: 582 TRSENVEKIIRDYFLKEEKNNVNSIFTIVGFTFTGNGQN 620



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 78/199 (39%), Gaps = 8/199 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               +      +   +  +     +S   +T I   +  +E+++     + +  I M ++
Sbjct: 299 AIETAKKVKEYISSFESYLPSGYKISYPYDTTIFVEESIKEVVKTLFEAIFLVVIVMFVF 358

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   +     + + +  T       G   N   + A++  IG  V+D +VV + 
Sbjct: 359 LN---SWRATIIPAIAVPVVLLGTFAILNFLGFSINSLTMFAMVLSIGLLVDDAIVVVEN 415

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           + +NMK    ++  ++    +++E     +  +    +  LPM  + GS       FA+ 
Sbjct: 416 VERNMKE--KNLCAKEATIIAMSEITSALIGVATVLSVVFLPMIFFSGSTGIIYKQFAVT 473

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   ++++   +I ++  I
Sbjct: 474 IISSMLLSVIVAITLSPAI 492



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 73/739 (9%), Positives = 188/739 (25%), Gaps = 67/739 (9%)

Query: 94  IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
             + I +  +        A KV  ++    S L            +    + +  + +I 
Sbjct: 285 QASGIGIKLSSGANAIETAKKVKEYISSFESYLPSG------YKISYPYDTTIFVEESIK 338

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
                      E+++   + I +    +    +      +P    P  L         + 
Sbjct: 339 -----------EVVKTLFEAIFLVVIVMFVFLNSWRATIIPAIAVPVVLLGTFAILNFLG 387

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           F              G   + D+      VE  ++   +    AT     +    ++ ++
Sbjct: 388 FSINSLTMFAMVLSIG-LLVDDAIVVVENVERNMKEKNLCAKEATIIAMSEITSALIGVA 446

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
                          + G          + +  +      +    I   F    +     
Sbjct: 447 TVLSVVFLPMIFFSGSTGIIYKQFAVTIISSMLLSVIVAITLSPAICATFLKPHSPSEKQ 506

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV------------ 381
                    K + +  +   +     +           ++ + +   +            
Sbjct: 507 TGPIVWFNNKFDSLTRKYKMSIFNFINRPLKWMTAYIVIIAVTILFFLKLPTGFVPSEDQ 566

Query: 382 ------LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
                      G  A  S  +  I+    L      +            G   +  +   
Sbjct: 567 GDLMIQFTLPVGASATRSENVEKIIRDYFLKEEKNNVNSIFTIVGFTFTGNGQNGGLGFI 626

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           E    + R  +      D    RA     DS+    I    ++     ++ G   + G  
Sbjct: 627 ELKNWKERAGKENK--ADEIAQRAMIVFSDSSSEYFIRDAEVYVMNPSSIPGLGNSDGFE 684

Query: 496 ILISMF--TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
             +      +   +      ++   K   I +            I + + + + + +G+S
Sbjct: 685 FQLQAGAKMSREELLKAKDSLLETLKSSEIIVGARVEGTEETPQIKLDYDKKKIYSLGLS 744

Query: 554 ILFSICSICLLFTHGLNYGIDF-------------------KGGIQLGVLANRPVDLSVV 594
                 ++   +                             +      V       +S  
Sbjct: 745 YEDIDNTLSSAWAGTYVNDFIDRSRVKRVYIQADAQYRAKPEDLYLWNVRNKENKMVSFE 804

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                S +  + S   ++G  ++L + Q   G S            K        +    
Sbjct: 805 EFTKISWEPAEKSLTRYNGLASYLFQGQAGYGISSGTAMDEMEKLAKANNKDTNYSWSGL 864

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                        + I    +S I + + +   ++ W   +  +  + L I   +     
Sbjct: 865 SYQEKLSGG----QAIYLYSLSLIVIFLCLAALYESWSIPISVLLAVPLGIIGAVIAVYF 920

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             +  ++    A+LT +G    + +++ + + +N   Y           +  +      +
Sbjct: 921 RELNNDVYFQVALLTTVGLVSKNAILIVEFI-EN--AYKNGKPLVKSAIQGASLRFRPII 977

Query: 774 YTSMAAFISVLPMAVWGGS 792
            TS+A    V+P+A+  G+
Sbjct: 978 MTSLAFIAGVIPLAISTGA 996


>gi|317493952|ref|ZP_07952369.1| hydrophobe/amphiphile efflux-1 family RND transporter
           [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918279|gb|EFV39621.1| hydrophobe/amphiphile efflux-1 family RND transporter
           [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1034

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 70/687 (10%), Positives = 177/687 (25%), Gaps = 51/687 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L           + ++P+  P               +V+  + 
Sbjct: 8   RPIFAWVIAIILMMAGALAIW-----NLPVAQYPTIAPP-------------SVVISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       +TL+F      +    +V  
Sbjct: 50  PGADAKTVQNSVTQIIEQNMNGIDNLMYMSSTSDSSGSASVTLTFQSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D +  +
Sbjct: 110 KLQLAMPLLPQEVQQQGISVEKSSSSFLMVAGFISEDNTMSQPDIADYVASNIQDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP +L     T   +     + NN       G        
Sbjct: 170 EGVGDVQLFGSQ-YAMRIWLDPHKLNNFHLTPLDVIDQIKVQNNQIAAGQLGGMPAVAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    R        +       
Sbjct: 229 ELNASIIAQTRL-------------QSPQEFGKILLKVQPDGSRVLLRDVAKVELGSENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +              L+         +           
Sbjct: 276 STQARFNGKPAAGLGIKLATGANALDVANNIKAELVKLQPFFPQGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L + G ++   ++
Sbjct: 336 SINEVVKTLLEAVVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAILDVFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +  S +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVLEEEGLSAKEATKKSMDQIQSALVGIALVLSAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F++T+  ++++S+  AI +  A+   I           +       
Sbjct: 456 MAFFGGATGAIYRQFSVTIVSAMVLSILVAIILTPALCATILKPVTPGTSHNKGGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +    ++   +     ++     +  +         + +G     V
Sbjct: 516 NRLFNKFTHHYTDSVDHMLVKTGRYMAIYLLVVVGMGVLFIQLPTGFIPEEDQGIALTSV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L  +    +  +  D E  F V      G           +K    
Sbjct: 576 QLPAGATQQRTDKVLAQVTDYFLKKEQRDVESVFTVSGFGFSGQGQNNGLAFVSLKPWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGI 670
                + +            ++    +
Sbjct: 636 RQGEENRVTAILARAAVAFGQIKDALV 662



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +      +        L        +++     ++    K+    P     
Sbjct: 264 DVAKVELGSENYSTQARFNGKPAAGLGIKLATGANALDVANNIKAELVKLQPFFPQGLKV 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + + + + +++  +     L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISINEVVKTLLEAVVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +FG   N   + A++  IG  V+D +VV + +     L    +S ++   KS+++    
Sbjct: 384 DVFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVLEEEGLSAKEATKKSMDQIQSA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  ++      +PMA +GG+       F++ +   +V++   +I +   +
Sbjct: 442 LVGIALVLSAVFVPMAFFGGATGAIYRQFSVTIVSAMVLSILVAIILTPAL 492



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 71/182 (39%), Gaps = 7/182 (3%)

Query: 653  NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              +  G      L       +  IS + + + +   ++ W      +  + L I   L  
Sbjct: 855  GYDWTGMSYQERLSGNQAPALYAISLVVVFLSLAALYESWSIPFSVMLVVPLGIIGALLA 914

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L  +  ++     +LT IG SV + +++ +  +  +       +  +   +++   L 
Sbjct: 915  VTLRSMNNDVYFQVGLLTTIGLSVKNAILIVEFAKDLID--REGKNVHEATLEAVRMRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + TS+A  + VLPMA+    G +   +    +  G++ A + +IF+     + I    
Sbjct: 973  PILMTSLAFILGVLPMAISTGAGSAAQNAVGTGVIGGMISATALTIFLVPVFFVVIERRF 1032

Query: 828  AK 829
            A+
Sbjct: 1033 AR 1034


>gi|255526668|ref|ZP_05393573.1| protein-export membrane protein SecF [Clostridium carboxidivorans
           P7]
 gi|296187173|ref|ZP_06855570.1| protein-export membrane protein SecF [Clostridium carboxidivorans
           P7]
 gi|255509648|gb|EET85983.1| protein-export membrane protein SecF [Clostridium carboxidivorans
           P7]
 gi|296048208|gb|EFG87645.1| protein-export membrane protein SecF [Clostridium carboxidivorans
           P7]
          Length = 294

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 86/287 (29%), Positives = 138/287 (48%), Gaps = 10/287 (3%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS +  +  +    T GL +G+DFKGG  L +   +  D + V S ++     
Sbjct: 7   KTKIWFAISSIIIVIGLFTAATKGLEFGLDFKGGTVLEISIGKTFDKADVDSIVKKYDSE 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
             S        N +     +   +      +  + K +      S++ N E +G  I  E
Sbjct: 67  FQS--------NKVNNTSIEIKSAKLNNENIAEIVKAVKAKYKDSSVTNQENIGASIGAE 118

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              K    + +S +AMLIY+  RF++ F L AI +L+ D+     F+A+F I  +   VA
Sbjct: 119 TRMKAYQAIALSVVAMLIYVAFRFEFTFGLAAILSLVHDVLIMFAFYAVFRIPIDSMFVA 178

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT+IGYS+ND +VV+DR+R+N   Y    S  +L + SI +TL RS+ T +   I ++
Sbjct: 179 AMLTVIGYSINDTIVVFDRIREN-HKYMRGSSVVELSNASITQTLARSINTVLTVLIMLV 237

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + V+    I +F+ P+  GI     SSIFIA P  + +     KN 
Sbjct: 238 AIYVF-VPGIRNFSKPLLVGITSGCYSSIFIATPFWVILKKHMGKNR 283


>gi|78067408|ref|YP_370177.1| hydrophobe/amphiphile efflux-1 pump, HAE1 [Burkholderia sp. 383]
 gi|77968153|gb|ABB09533.1| Hydrophobe/amphiphile efflux-1 pump, HAE1 [Burkholderia sp. 383]
          Length = 1066

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 154/574 (26%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVASIF-----TLPISQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPVLPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANFVASHVKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D +RL     T   +S      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDANRLTNYGLTPVDVSTAIAAQNVQIAGGQIGGTPSTPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        I       
Sbjct: 229 MLQATITESTLL-------------QTPAQFGDILLKVNQDGSQVRLKDVSKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAVMSVVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVTAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F  +R             S   L  +
Sbjct: 511 FFGWFNRTFNNSRDKYHVGVHHVIKRSGRWLVIY 544



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++    
Sbjct: 258 SQVRLKDVSKIELGGENYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAVMSVVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGIALVLSAVFVPVAFSGGSVGAIYRQFSLTIVTAMVLSVLVALILTPAL 492



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 81/219 (36%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K   +    +         +   +    
Sbjct: 816  ERYNGVSAMEIQGQASPGKSTGQAMAAMEQLAKKLPVGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    + G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATMRGLENDVYFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++  + L   + TS+A  + V+P+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQVTEKMGPVEAALEAARQRLRPILMTSLAFILGVMPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 991  SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVKIR 1029



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 59/521 (11%), Positives = 133/521 (25%), Gaps = 36/521 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WLVI   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLVIYLVVIIAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   + + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LANISDYLLKDEKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSQRQHANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +        ++         +  +     ++  +A      ++  R   +G++    
Sbjct: 650  MFGRYAGYKDAIVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMASKDP 709

Query: 182  QRLGSH----RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               G          Q     D  +   L  T   +     +                   
Sbjct: 710  TLQGVRPNGLNDTPQYKVNIDREKANALGVTADAIDQTFSIAW----------------- 752

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 V + ++  G           P    P     +                       
Sbjct: 753  -ASKYVNNFLDTDGRIKKVYVQADAPFRMTPDDLNIWYVRNGSGGMVPFSAFATGHWTYG 811

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     V    I    +          A    A      +      +  + + +   
Sbjct: 812  SPKLERYNGVSAMEIQGQASPGKSTGQAMAAMEQLAKKLPVGIGYSWTGLSFQEIQSGS- 870

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                     AI   +V + L  +             + L VI  L   ++ G    +   
Sbjct: 871  ---QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATMRGLENDVYFQ 927

Query: 418  AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             G++  +GL+  + IL+ E  RE +  +      +      +    I  +++  ++  + 
Sbjct: 928  VGLLTTVGLSAKNAILIVEFARELQVTEKMGPVEAALEAARQRLRPILMTSLAFILGVMP 987

Query: 477  LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            L      G  +       +   +L + F AI ++    + I
Sbjct: 988  LAISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVKI 1028


>gi|315126485|ref|YP_004068488.1| preprotein translocase SecF, auxillary membrane component (General
           Secretory Pathway) [Pseudoalteromonas sp. SM9913]
 gi|315014999|gb|ADT68337.1| putative preprotein translocase SecF, auxillary membrane component
           (General Secretory Pathway) [Pseudoalteromonas sp.
           SM9913]
          Length = 309

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/290 (26%), Positives = 145/290 (50%), Gaps = 7/290 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R R+ G+ IS +F + S+  +   GLN+G+DF GG       ++ V+L  +   +     
Sbjct: 13  RIRYTGMLISAIFVLLSVFTIAQKGLNFGLDFTGGYLTEFTTSQGVELKQLEQFIAKNHQ 72

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
           G+            L +      ++       +            + + ++  +G ++  
Sbjct: 73  GEFELTAQGNNHFQLTQGPNNTSNND------DWKTAISQNPTINAEVLSSAYIGSQVGD 126

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + +  + +A++IY+ +RF+W  ALG++  L  D+   +G FA   IEFNLT +
Sbjct: 127 ELFEQGCLALFAAMVAVMIYLAVRFEWRLALGSVVALFHDLVLVVGLFAWLQIEFNLTVL 186

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFIS 782
           A++L +IGYS+ND ++V DR+R+ +++ T  ++    +I+ +I  TL R++ TS     +
Sbjct: 187 ASLLAIIGYSLNDSIIVGDRVRELLRIPTNITLKPSSIINSAIKSTLTRTLITSGTTLAT 246

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           V  + +  G+ +  FAI +  GIVV   SSI IAA +   +        +
Sbjct: 247 VASVWLLAGAPLQGFAIALFAGIVVGTLSSICIAATLPELLGLSAKNYDK 296


>gi|254787905|ref|YP_003075334.1| RND transporter HAE1 family [Teredinibacter turnerae T7901]
 gi|237685718|gb|ACR12982.1| RND transporter, HAE1 family [Teredinibacter turnerae T7901]
          Length = 1050

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/690 (9%), Positives = 182/690 (26%), Gaps = 50/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L  +     Q  + ++P   P               + +    
Sbjct: 8   RPVFAWVIAIVIMLAGVLAIV-----QLPVAQYPEVAPP-------------SVSIRASY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTL 117
                  ++      +   L       +      +     +TL+F      +    +V  
Sbjct: 50  PGASAKVVEDSVVQIIEQNLTGVDNMQYMSSTSDSSGTAEVTLTFVAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +  T      +++     +       + S  I     + +   
Sbjct: 110 KLQAAMPLLPNEVQQQGIRVTKSTAGFLMVLGFVSEDGSLDKYDISDFIAANVREPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D  ++     TT  +       N        G        
Sbjct: 170 NGVGTIQLFGSQ-YAMRIWLDAHKMAAYDFTTVDVVNAIRAQNAQIAAGELGGAPALPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 DINASIVVQTRLNNAQ-------------QFSNILLRVNPDGSQITLGDVARVEMGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +   T +        L+         +           
Sbjct: 276 QFETEYNNQAATGLAVTLASGANALETADAVMARIEDLKPFFPHGLTVVKAFDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A L   G ++   ++
Sbjct: 336 SIEGVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLMGTFATLLAFGFSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     ++      +     S+    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEDNLGPREATRKSMSQITGALIGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAM---------MIFIIRYKKMKSID 524
           + FFGG      R F+IT+  ++L+S+  A+++  A+         +    R       +
Sbjct: 456 MAFFGGSTGIIYRQFSITIVSAMLLSVVVALTLTPALCASMLRKSDVDHYARRGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               S        +     R   + V   ++    ++      G     + +G +   + 
Sbjct: 516 RKFDSSSDGYQRGVGYMLARKGRFMVVYLVIVGALALLFGRLPGSFLPDEDQGIMFTQMS 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                      + ++ ++   +  +  + E  F V      G           ++     
Sbjct: 576 LPVGSTKERSMAVMDKVESYFLEQEKANVESVFSVIGFSFSGRGQNNGIAFVKMRDWSER 635

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                 +Q+          ++    +   +
Sbjct: 636 TGAGQDVQSIAGRAMGYFMQMREAMVFPFV 665



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 86/245 (35%), Gaps = 6/245 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  V       +      +  +     L        +++     +    + +    
Sbjct: 258 SQITLGDVARVEMGAENYQFETEYNNQAATGLAVTLASGANALETADAVMARIEDLKPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I   +  +I + + + + +++  + +   L     + + + 
Sbjct: 318 PHGLTVVKAFDTTPFVKLSIEGVVHTLIEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLM 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T      FG   N   + A++  IG  V+D +VV + +     ++  ++  R+   KS+
Sbjct: 378 GTFATLLAFGFSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEDNLGPREATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  +  ++      +PMA +GGS       F+I +   ++++   ++ +   +   
Sbjct: 436 SQITGALIGIALVLSAVFIPMAFFGGSTGIIYRQFSITIVSAMLLSVVVALTLTPALCAS 495

Query: 823 IYDWR 827
           +    
Sbjct: 496 MLRKS 500



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 91/280 (32%), Gaps = 8/280 (2%)

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
             I   F  A         + +     +       Y ++        V  ++   +S    
Sbjct: 742  QINAVFSTAWAASYVNDFIDNGRVKRVYVQGDTPYRMNPDDVGDWYVRNDKGEMVSFSAF 801

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
                   G    + ++G  +  ++ Q  PG S  +   +                    +
Sbjct: 802  ASGRWIYGSPRLERYNGISSVNIQGQGAPGVSSGEAMAIMEELAAKLPPGFGYEWTGMSL 861

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               +   +      + +++  + +     +   W   +  +  + L +   L F  L G+
Sbjct: 862  QERQSGDQAPMLYALSILVVFLCLA---ALYESWSVPIAVMMVVPLGVIGALLFAMLRGM 918

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              ++     +LT IG S  + +++ +  R   +      S  +   +++   L   + TS
Sbjct: 919  SNDVYFQVGLLTTIGLSAKNAILIVEFARAIYEEEKK--SLIEATMEAVRMRLRPIIMTS 976

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            +A  + VLP+ +    G     +    +  G++ A + +I
Sbjct: 977  LAFGLGVLPLVIASGAGSGSQNAIGTGVFGGVLSATALAI 1016


>gi|194431254|ref|ZP_03063547.1| multidrug resistance protein MdtF [Shigella dysenteriae 1012]
 gi|194420709|gb|EDX36785.1| multidrug resistance protein MdtF [Shigella dysenteriae 1012]
 gi|332086221|gb|EGI91381.1| inner membrane protein [Shigella dysenteriae 155-74]
          Length = 1037

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 146/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGTSPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM----GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++               RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKETTHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+L+S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMLLSVFVAMSLTPALCATI 496



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLATGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKETTHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMLLSVFVAMSL 488



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 791  NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 851  AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 911  LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKEEK--TPIEAIIEAARM 968

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 969  RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 1018


>gi|109900501|ref|YP_663756.1| preprotein translocase subunit SecD [Pseudoalteromonas atlantica
           T6c]
 gi|109702782|gb|ABG42702.1| protein-export membrane protein SecD [Pseudoalteromonas atlantica
           T6c]
          Length = 608

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 142/509 (27%), Positives = 263/509 (51%), Gaps = 26/509 (5%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
              QS   ++   M  + I LGLDL GG   VLEVD        L    DE    +  +G
Sbjct: 107 LGSQSAAPKWLQGMGMSPIKLGLDLSGGVLFVLEVDTHKADQERLGNAKDEALQLIHDKG 166

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           +   S++   ++  ++      +   A +V   +  +  +L           + +++ ++
Sbjct: 167 LRGMSVKLADSQEKINLHFLTHQ---ASQVKKVVNELQQQLPG----ITYTASGDRDAAL 219

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V S  ++       + Q++  +R RI+++GI+E+  QR G +RI I+LPG +DP + +++
Sbjct: 220 VFSDQSVTTFHHEIMAQALTTLRGRIEELGITEAVTQRQGQNRIRIELPGVKDPEQAKRI 279

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G TA + F+++           G +   D +G +  +  K   +G ++     +   + 
Sbjct: 280 IGATASLDFYEMAQ-----SGTVGAKTFTDENGRRLRLAPKPIFTGSNIEN-ATSGRDEM 333

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIP 313
              +V+++ D +G ++  + ++DNIG P+  +       +                Q+  
Sbjct: 334 GIALVNLALDGIGGKKMSDFSKDNIGNPMVTIFSEYHKNSADEMVKSSKVISVATIQSQL 393

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             +  I+   + + A  LA +LRAGSL   + IV++R + A LG +++  G  A+  GL 
Sbjct: 394 GNRFSITNLDSPQAASDLALLLRAGSLDAPITIVQQRTIQASLGQENVGNGIMALAIGLG 453

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432
             ++FM + Y K GL+A+ S+ LN++  L L++LL    LTLP IAG+VL +G+AVD+N+
Sbjct: 454 FTLVFMGLWYRKLGLIANTSLILNLVCLLGLMALLPNVVLTLPGIAGLVLTVGMAVDTNV 513

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+ ERI+EE ++ +S F +++ G+  A++TI D+N+T +I  ++L   G G V+GFA+T+
Sbjct: 514 LIFERIKEERKRGRSNFLAIETGYKEAFATILDANVTTMITALILLSIGYGPVKGFAMTL 573

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMK 521
            L IL SMFT + +   +   +     +K
Sbjct: 574 SLGILTSMFTGVFVAHVLTSLVKPQIAIK 602



 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 40/226 (17%), Positives = 91/226 (40%), Gaps = 5/226 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    N     +      +    ++ L            Q      +  +   +    TI
Sbjct: 367 SEYHKNSADEMVKSSKVISVATIQSQLGNRFSITNLDSPQAASDLALLLRAGSLDAPITI 426

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +   + +E +  GI+ + I     L+++ + ++    L A T+LIL++   LG  
Sbjct: 427 VQQRTIQASLGQENVGNGIMALAIGLGFTLVFMGLWYR-KLGLIANTSLILNLVCLLGLM 485

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           AL   +   L  +A ++  +G +V+  V++++R+++  K      S    I+    E   
Sbjct: 486 ALLPNVVLTLPGIAGLVLTVGMAVDTNVLIFERIKEERK---RGRSNFLAIETGYKEAFA 542

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +  ++   I+ L +   G   +  FA+ ++ GI+ +  + +F+A
Sbjct: 543 TILDANVTTMITALILLSIGYGPVKGFAMTLSLGILTSMFTGVFVA 588


>gi|323142297|ref|ZP_08077129.1| export membrane protein SecF [Phascolarctobacterium sp. YIT 12067]
 gi|322413181|gb|EFY04068.1| export membrane protein SecF [Phascolarctobacterium sp. YIT 12067]
          Length = 294

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 94/290 (32%), Positives = 157/290 (54%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           + +  ++       I+I F I  I  +   G N GIDF GG  + +    PV +S VR  
Sbjct: 1   MKLSIVKRYKIFFAITITFLIIGIGSMLFKGFNLGIDFTGGSIMDLEFKNPVTVSQVREV 60

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   +G+   Q    + N            V      + V   +   V    IQ  E V
Sbjct: 61  LKEKDLGNAIIQLESSDSNAKSSKGVLIRTGVISDEQRQQVMTDLKSKVGDFAIQRVENV 120

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  +  ELI++ ++ +++S   M+ YI IRF++ FAL AI  LI+D+  TL +F+LF +E
Sbjct: 121 GATVGGELIQQAVMAIVLSWFLMIAYITIRFEFRFALAAIIALIIDVLVTLSYFSLFHME 180

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + + VAA+LT++GYSVN  +V++DR+R+N+K++  S S  +++D SI +T+GRS+YT  
Sbjct: 181 LDSSFVAALLTVVGYSVNGTIVIFDRIRENLKIHRRSESMTEMVDNSIWQTMGRSIYTVG 240

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  +V+ + +WGG  I +F+  M  G    A +S F+A P+ + +   +
Sbjct: 241 TSLFAVVAIFIWGGETIRNFSFAMLVGFSSGAYTSTFLAGPLWMMLRKLK 290


>gi|237748466|ref|ZP_04578946.1| hydrophobe/amphiphile efflux-1 family protein [Oxalobacter
           formigenes OXCC13]
 gi|229379828|gb|EEO29919.1| hydrophobe/amphiphile efflux-1 family protein [Oxalobacter
           formigenes OXCC13]
          Length = 1081

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 82/669 (12%), Positives = 187/669 (27%), Gaps = 42/669 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +IC  G +      + Q  ++++P+  P               + +    
Sbjct: 9   RPIFAIVVSLIICLAGGIA-----MTQLPVEQYPNMSP-------------VQITVSAQY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  L + +        +   S    Q ++T+ F      +    +V  
Sbjct: 51  PGADAKTLADSVAAPLENQINGIDNMLYMTSSSSSSGQLQLTVFFNIGTDPDIAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   + +L  +  +N +    E    ++L     D  +      S       +D I   
Sbjct: 111 RVNIASPQLPSEVTQNGVQVQKESSSMLMLIGLYGDPKMYSQDYVSNYANVYVLDAIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +P ++  L  TT  ++      N        G        
Sbjct: 171 PGAGQATVMGNADQAMRIWLNPDKMASLKITTTDVAEAVSSQNKLFSAGQIGGEPAPAGI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y                 + +        + I     G+                  
Sbjct: 231 QQTYP------------AITRSPYQNAEDYENMIIRASNDGSAIVRLKDIGRASMGKQTY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    +            +   +     +        L+AG       ++          
Sbjct: 279 LVNTQMNGEFATFIQVVQQPGANALDVSKAVRAELDKLQAGFPDGIHYVIGVDTTDYVRI 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   +V+ V+++ +   +  L+A  +IF+ ++ T A + +L  ++ + ++
Sbjct: 339 SIEEVIKTLIIAICIVIGVIYVFLQKYRATLIASTAIFVALLGTFAGMYVLNFSINMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +     +       +     +   S I  + +  +   V 
Sbjct: 399 FGMVLAIGLVVDDAIVVVENVERNIDESGMDRKQATIQAMNELVSPIVATVLVLVSVFVP 458

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSR 530
             F     G   + FAIT+ +S+ IS F A+++  A+    ++     +           
Sbjct: 459 AAFVPGTTGQLYKQFAITIAISVTISGFVALTLTPALCGSWLKQTPAPTKGPFAWFNKKF 518

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L            +   + +     + +   L    L      +      + A    D
Sbjct: 519 ASLTEHYGRWSAAVIKHSMIALICFGVMIAAIWLLFARLPTSFVPQEDQGYLITAVILPD 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S +      +       +   G +       +   D+  +                   
Sbjct: 579 SSSLERTQNVMNKVSDIVEKIPGVETRAGISGFSLLDNGFKNSSGTYFMALKPFDERYKN 638

Query: 651 IQNTEIVGP 659
           I+  +    
Sbjct: 639 IKTAKAQNA 647



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 96/283 (33%), Gaps = 6/283 (2%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                    +  +   N        I+     +  V L  +       Q   ++ Q    
Sbjct: 228 AGIQQTYPAITRSPYQNAEDYENMIIRASNDGSAIVRLKDIGRASMGKQTYLVNTQMNGE 287

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              F+  +Q    +++  ++ +     K+    P        +      R  I + I  +
Sbjct: 288 FATFIQVVQQPGANALDVSKAVRAELDKLQAGFPDGIHYVIGVDTTDYVRISIEEVIKTL 347

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           II+   ++  I++   K+   L A T + + +  T     +     N+  +  ++  IG 
Sbjct: 348 IIAICIVIGVIYVFLQKYRATLIASTAIFVALLGTFAGMYVLNFSINMLTLFGMVLAIGL 407

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +     +  + +  +    +++NE +   V T +      +P A   G+
Sbjct: 408 VVDDAIVVVENV--ERNIDESGMDRKQATIQAMNELVSPIVATVLVLVSVFVPAAFVPGT 465

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                  FAI +A  + ++   ++ +   +            +
Sbjct: 466 TGQLYKQFAITIAISVTISGFVALTLTPALCGSWLKQTPAPTK 508



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/214 (9%), Positives = 62/214 (28%), Gaps = 7/214 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                A   +               D+           +         S      +E V 
Sbjct: 791 LYTRNAQGQMVPLSSVVTTSYTTGPDLVPHFNGFPSAEITGNAAAGYSSGQAMTAIEDVA 850

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
             +                 K         ++  +   I + + +  +++ W      + 
Sbjct: 851 NAVMPKDFAYGWSGVAFEEEKSG----TSSMIVFVFGVILVFLILAAQYESWALPAVILM 906

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            +   +  +L    + G++ ++     +L ++G +  + +++ +   +  K   T  +  
Sbjct: 907 AVPFGLIGSLLATWIRGLDNDVYFQVGLLVMVGLAAKNAILIVEFAVELAKKPNT--TLA 964

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
                +        + TS+A    V+P+A+  G+
Sbjct: 965 QAAVAAGKIRFRPIIMTSLAFIGGVIPLAIAMGA 998


>gi|149190754|ref|ZP_01869020.1| putative acriflavin resistence protein [Vibrio shilonii AK1]
 gi|148835410|gb|EDL52381.1| putative acriflavin resistence protein [Vibrio shilonii AK1]
          Length = 1051

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/690 (11%), Positives = 191/690 (27%), Gaps = 44/690 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +   + +++  ++   G +  +        +  +P   P +             +     
Sbjct: 8   QRPKFALVISIILTLAGAISLMV-----LPVAEYPKISPPS-----------VSVTAYYT 51

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
               + V   +    +   + ++             +  + ++F      +     V   
Sbjct: 52  GASAEVVEEAVADPIETSVNGVENMIYMSSKSANDGSYNLNVTFDIGTDPDMAQVNVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  + SKL  + +   +         +++                  I     DQ+   +
Sbjct: 112 VSQIESKLPQEVRMVGVTVKKRSPDLLMVLNFYSPDGRYDDQFLINYINLNVKDQLARVK 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +L  L  TT+ +       N        G     D   
Sbjct: 172 GISEVNVIGGGEYAMRVWLDPDKLANLKMTTSDVYAALAEQNVQVAAGRVGAAPYADPQE 231

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            Q+ +  K  +                 +    +          +      +        
Sbjct: 232 VQFNLVTKGRL-------------ESVSEFENVVLRANSDGSTVYLKDVARVELGKKFYD 278

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                     +    + ++  +   + +    L   L                      S
Sbjct: 279 GSGQFRGEDASIVALNLQSDANALESGQAVMDLLERLSVNFPEGMAYETSYDTTVFVAES 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV+ V ++ +   +  L+   +I +++I T A++++ G T+   ++ 
Sbjct: 339 IKGVVKTLVEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGTFAVMNMTGFTINTVTLF 398

Query: 419 GIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           GI+L IG+ VD  ILV E +        + S   +  M        I  S +  L   + 
Sbjct: 399 GIILAIGIVVDDAILVIENVDTIMKRNPHISPRKATLMAMKEVTGPIITSTLVLLAVFIP 458

Query: 477 ---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINP 527
              L    G   R FA+T+ +S++IS   A+++  A+   +         +  ++ +   
Sbjct: 459 VTLLPGITGIMYRQFALTICISVIISSINALTLSPALCSLVLKQGGGNTARWFQTFNGLL 518

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                           +A        I     +     T       + KG + + V    
Sbjct: 519 ERITMRYGQVAGFLVKKALLLMTFFIIAVGAVTFLSKNTSTAFVPQEDKGILLVNVQLPD 578

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              LS      E L          DG         +  G + +    L +  K  +E   
Sbjct: 579 SASLSRTTETTEKLVNLVQQEPGIDG-ITVANGYAFMTGAAASNGASLFIKLKDWSERNG 637

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                +   +  +++    ++    V+ + 
Sbjct: 638 FEGDHSANAIAARVNGMAAQQIPGAVVFAM 667



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 74/216 (34%), Gaps = 5/216 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D S Q    + + +        +++   + +  + ++++   P 
Sbjct: 262 VYLKDVARVELGKKFYDGSGQFRGEDASIVALNLQSDANALESGQAVMDLLERLSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  ++ + + ++             L  +  + + +  T
Sbjct: 322 GMAYETSYDTTVFVAESIKGVVKTLVEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N   +  ++  IG  V+D ++V + +   +      IS R     ++ E
Sbjct: 382 FAVMNMTGFTINTVTLFGIILAIGIVVDDAILVIENV-DTIMKRNPHISPRKATLMAMKE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
             G  + +++      +P+ +  G        FA+ 
Sbjct: 441 VTGPIITSTLVLLAVFIPVTLLPGITGIMYRQFALT 476



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/354 (11%), Positives = 92/354 (25%), Gaps = 21/354 (5%)

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFI 514
            A +   +      I   V+F  G  AV G     G   ++      S   +   M   I
Sbjct: 645 NAIAARVNGMAAQQIPGAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLALVMQDVI 704

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
               +   I     +    +P                            L +  +N    
Sbjct: 705 QTANQQPEIAYTFSTFRANVPHYYVDIDREKAQQLGIPLSSIFQTLQGNLGSLYVNDFTM 764

Query: 575 FKGGIQLGVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           F    ++ V A+              V  S       S  +        D    + +   
Sbjct: 765 FGKNFRVTVQADAQYRSGMEDLQLFHVRSSNGEMIPLSTLVSYEQVFEPDVAWRYNMYRS 824

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAML 681
                  A           +  +         +     ++ + +  G   +   +   + 
Sbjct: 825 AVIQGQPAPGYSSGDAIAAMERVAAEVLPMGYQYEWTGMAYQEVLAGNQAIYAFALALIF 884

Query: 682 IY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           IY   +     W   L  I  + +    +     L G   NL A   ++ LI  +  + +
Sbjct: 885 IYLFMVAQYESWTIPLAIILVVPVATLGSFIALNLTGTPLNLYAQIGLVLLIALAAKNAI 944

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           ++ +  +  ++     ++  D   +           TS +  + + P+    G+
Sbjct: 945 LIVEFAK--LEREDKDVAIDDAAVRGGMLRFRAVNMTSWSFILGIFPLIFASGA 996


>gi|83943996|ref|ZP_00956453.1| hypothetical protein EE36_10135 [Sulfitobacter sp. EE-36]
 gi|83845243|gb|EAP83123.1| hypothetical protein EE36_10135 [Sulfitobacter sp. EE-36]
          Length = 1035

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/674 (10%), Positives = 185/674 (27%), Gaps = 39/674 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L      +G        +    + ++P   P                      
Sbjct: 8   RPVFAWVLAIATVLLGAFS-----MTGLPISQYPDIAPTTVR---------ISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + L        S  +    ++L+F DS   +    +V   LQ V
Sbjct: 54  AATVENSVTTVIEDGLTGLDGLTYMTSSSSEGAASVSLTFDDSIDPDMAQVQVQNKLQLV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L        +  +   +  +++     +     ++E    +     D +  +     
Sbjct: 114 ESQLPDTVTSQGVSVSRSTDSVLMVGALVSEDGSYTSLELGDLLSSTIEDPVQRTAGVGS 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +P +L Q   T++ ++      N +      G + +         
Sbjct: 174 INVFGT-EYAMRIWLNPEKLFQYQLTSSDVTTAVSEQNTNVTVGSLGEQPVVKGQQFTVS 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  + ++  +                   +          +      I            
Sbjct: 233 LSAQSQLESVE-------------DFRNILLKTNSDGSAIYLADVATIELAEEDYGSVSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +     +   T E    +   L +      +             S    
Sbjct: 280 FNGHPAAGFAVNLSTGANAVDTAEAVRDVVGNLSSALPEGVVVEYPYDTSPFVEESIDQV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  ++   ++ + ++ T  +LS  G ++   S+  +VL
Sbjct: 340 YETLLEAIVLVFLVIFLFLQSWRATIIPTIAVPVVLLGTFGVLSAFGMSINTLSMFALVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IGL VD  I+V E +      +      + +       S +    +      + + F  
Sbjct: 400 AIGLLVDDAIVVVENVERVMEEEGLDAVAATEKSMGEISSALIGIVMVLSAVFLPMAFMD 459

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDINPLSRF 531
           G      + F++T+  ++++S+F A+ +  AM   +++    K         +       
Sbjct: 460 GSTGVIYKQFSVTIISAMVLSLFVALILTPAMCAQLLKPNHDKKPLLPLRWFNGGLDRLT 519

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +    MR     V ++++                  + +G +   +   +   +
Sbjct: 520 GGYASLVGRLSMRPFRMVVVLALVGFGAYWVYDRLPSSFLPTEDQGVLMTMIELPQGSTV 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
               + +E ++   +  +    +  F        G       +   +K         +  
Sbjct: 580 QQTANTIEQIEQYLLIEETEMVDGVFANVGYSFGGSGQNYGMMFIRLKDYEERPGLDAAD 639

Query: 652 QNTEIVGPKISREL 665
                 G      L
Sbjct: 640 LMMRANGKFFQSRL 653



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 79/211 (37%), Gaps = 8/211 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A   V+  +   + E V +    +T     +   ++    +  +++  + + +++ 
Sbjct: 300 DTAEAVRDVVGNLSSALPEGVVVEYPYDTSPFVEESIDQVYETLLEAIVLVFLVIFLFLQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   +     + + +  T G  + FG+  N  ++ A++  IG  V+D +VV + + 
Sbjct: 360 ---SWRATIIPTIAVPVVLLGTFGVLSAFGMSINTLSMFALVLAIGLLVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +      +KS+ E     +   M      LPMA   GS       F++ + 
Sbjct: 416 -ERVMEEEGLDAVAATEKSMGEISSALIGIVMVLSAVFLPMAFMDGSTGVIYKQFSVTII 474

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             +V++   ++ +   +   +         +
Sbjct: 475 SAMVLSLFVALILTPAMCAQLLKPNHDKKPL 505



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 71/188 (37%), Gaps = 6/188 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
             V +++T  +  S       +  +      ++ I+  I + +  L    +   W      
Sbjct: 834  EVMEQLTADLDGSYASAWTGLSYQERLSGDQEAILYTISALVVFLCLAALYESWAVPFAV 893

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            + ++ + I   L     FG   ++     +LT IG +  + +++ +   ++++      +
Sbjct: 894  MLSVPVGILGALVTTWYFGQSNDVYFKVGLLTTIGLAARNAILIVE-FAESLRAEGK--A 950

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
              +    +  + L   + TS+A    ++P+ +    G +   S    M  GI+ +A   I
Sbjct: 951  LLEATVMAARQRLRPILMTSLAFGFGIMPLVLASGAGANAQKSIGTGMLGGIIFSAVIGI 1010

Query: 814  FIAAPILL 821
             +     +
Sbjct: 1011 VMVPVFYV 1018


>gi|262279091|ref|ZP_06056876.1| AdeB [Acinetobacter calcoaceticus RUH2202]
 gi|262259442|gb|EEY78175.1| AdeB [Acinetobacter calcoaceticus RUH2202]
          Length = 1035

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/633 (12%), Positives = 180/633 (28%), Gaps = 47/633 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   G+L       P+  + RFPS  P               + +   
Sbjct: 8   RRPIFAWVIAIFIILFGVLSI-----PKLPIARFPSVAPPE-------------VNITAS 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   +            +      +IT +F      +     V 
Sbjct: 50  YPGATPKTINDSVITLIEREMSGVKNLLYYSATTDSSGTAEITATFKPGTDVDMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQVVRQQGLSVEASSSGFLMLVGLNSPNHRYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     + + ++      N        G R L + 
Sbjct: 170 VEGVGKIQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRNNNIGIAPGRLGDRPLING 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++  +              +         +           ++      
Sbjct: 229 QLITIPLSAQGQLENVE-------------QFKNISLKSNINGANIKLSDVADVEMGAQS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T E        L+          V         
Sbjct: 276 YNFAILENGKPATAAAVQLSPGANAVKTAEGVKQKLEELKVNLPEGMQFSVPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 336 ISIEKVIHTLIEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTIMLLTGYSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  +   +     +   S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLAPKEATSKAMTEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +    G      R F ITM +SIL S F A+++  A+   +++            + F 
Sbjct: 456 PMALASGSVGIIYRQFTITMSVSILFSAFLALTLTPALCATLLKPIDAHHQKKGFYAWFD 515

Query: 533 LIPDCIAIQFMR------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              D +  ++               I  +           +     +  +          
Sbjct: 516 RSFDKVTKKYEVLLLKVIKHTIPTLIIFVVITGLTFAGMKYWPTAFMPEEDQGWFLTSFQ 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
            P D +  R+     +  D   +  D + N  +
Sbjct: 576 LPSDATAERTQKIVKEFEDHLNERSDVKSNISI 608



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + LS V       Q  + +                   ++V     ++   +++   +P
Sbjct: 260 NIKLSDVADVEMGAQSYNFAILENGKPATAAAVQLSPGANAVKTAEGVKQKLEELKVNLP 319

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLIL 702
                +         +  I K I  +I + + + I +++     R+    A+ A   L  
Sbjct: 320 EGMQFSVPYDTAPFVKISIEKVIHTLIEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL-- 377

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
               T     L G   N+  +  ++  IG  V+D +VV + +     + T  ++ ++   
Sbjct: 378 --LGTFTIMLLTGYSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLAPKEATS 433

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++ E     +  ++      LPMA+  GSV      F I M+  I+ +A  ++ +   +
Sbjct: 434 KAMTEITSPIIGITLVLAAVFLPMALASGSVGIIYRQFTITMSVSILFSAFLALTLTPAL 493

Query: 820 LLFIYD 825
              +  
Sbjct: 494 CATLLK 499



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 72/183 (39%), Gaps = 6/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFA 693
            + +++    I  L      E  G  +  +     +V +I +S + + + +   ++ W   
Sbjct: 831  DAMREMEKLIAKLPQGIGYEWTGISLQEKQSESQMVFLIALSMLVVFLVLAALYESWSIP 890

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  +  + L I   +    L G+  ++     ++T+IG S  + +++ +  +    L   
Sbjct: 891  LSVMLVVPLGIFGAILAIILRGMPNDIFFKIGLITIIGLSAKNAILIVEFAK---MLKEE 947

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             +S  +    +    L   + TS+A    V+P+ +  G+        +  G+     S+ 
Sbjct: 948  GMSLVEAAVAAAKLRLRPILMTSLAFTCGVIPLVIASGAS-SETQHALGTGVFGGMISAT 1006

Query: 814  FIA 816
             +A
Sbjct: 1007 ILA 1009


>gi|59714090|ref|YP_206865.1| acriflavin resistance plasma membrane protein [Vibrio fischeri
           ES114]
 gi|59482338|gb|AAW87977.1| acriflavin resistance plasma membrane protein [Vibrio fischeri
           ES114]
          Length = 1037

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 198/689 (28%), Gaps = 40/689 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  ++  +GL+      L    +  +P+  P   I          + V     
Sbjct: 9   RPKFALVISLVMTLMGLIA-----LKVLPIAEYPAISPTVII---------VNTVYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++       ++    +  + + F      +    +V   +  
Sbjct: 55  ADVVKKTVAQPLESKINGVEDMIYMSSNIGNDGSYSLRVYFRIGADGDMAQVRVNNLVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  + K+  +    +    + +   +       +I  S       ++++   E   
Sbjct: 115 ATSTLPPEVKQIGVTVRKKSSDILGVVTLSSPNKTYDSIYLSNYADLNLVERLKRLEGMS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    +P+++  L  T   +       N        G     D   NQY
Sbjct: 175 DITLLGKKSYSMRIWLNPNKMSTLNLTAKDVISAVKSQNIQVAAGKIGGMPAPDQQQNQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++ K  ++                +    +                 +           
Sbjct: 235 VLQTKGRLTSTD-------------EFANIVIRANKDGSIIRLSDVARLELGAQGYEADG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +    +                     +   +      S   
Sbjct: 282 QLNNQPAAVMALYQLPTANALDAMSKVKAAMKEYSKTFPDDLEYNIAYDSTEYVEASIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I A LV IV+++ +   +   +   +I +++I T A++SL+G T+   S+ G++
Sbjct: 342 VYETLIIAALLVAIVVYVFLQNLRATAIPIIAIPVSIIATFAVMSLMGMTINTISLFGLI 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +    + K+     +           +  + +  L   V +   
Sbjct: 402 LAIGIVVDDAIIVVENVERIIHEKHMKPIPATIEAMKEVTGPVLATTLILLAVFVPVALL 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRF 531
            G + +    FA+T+ +S+LIS   A+++  A+   I+  K       +++ +    +  
Sbjct: 462 PGISGKMFNQFAVTICVSVLISAINALTLSPALCGLILTDKHSEPIAPLRAFNRGFDAVT 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +     R     V    L  +     +         + KG   + +       L
Sbjct: 522 KKYQFLVGFMSQRLLVSSVIYIALIGVLGYTFMTIPTAFVPNEDKGAFMVEMRLPDSASL 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                 L+      +     +   +                 ++  +        P    
Sbjct: 582 QRTIPILQDYTRDLLEMDGVEDVVSVSGFSLINMSAIPNAGMLIIKLNNWDDRKDPALHQ 641

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +       ++   +       ++ +  A+
Sbjct: 642 KALMNKVRQMLNTIPNA--NALVFATPAI 668



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 93/237 (39%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + LS V       Q  +   Q  +     +   Q    +++     ++   K+ ++  
Sbjct: 260 SIIRLSDVARLELGAQGYEADGQLNNQPAAVMALYQLPTANALDAMSKVKAAMKEYSKTF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     N      +     I +    +II+A+ + I +++  +        I  + + I 
Sbjct: 320 PDDLEYNIAYDSTEYVEASIDEVYETLIIAALLVAIVVYVFLQNLRATAIPIIAIPVSII 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +L G+  N  ++  ++  IG  V+D ++V + +     ++   +       +++
Sbjct: 380 ATFAVMSLMGMTINTISLFGLILAIGIVVDDAIIVVENV--ERIIHEKHMKPIPATIEAM 437

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
            E  G  + T++      +P+A+  G        FA+ +   ++++A +++ ++  +
Sbjct: 438 KEVTGPVLATTLILLAVFVPVALLPGISGKMFNQFAVTICVSVLISAINALTLSPAL 494



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 68/237 (28%), Gaps = 10/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             ++ +   D            +  +      S    + +E + +                
Sbjct: 802  KIKPIFGPDSLMNYNLFGSATINGVPASGYSSGDVVKAIEKLAENELPKGYSFEWSGMTY 861

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               +          V   +S +   +++  +++ W      +  + + I   +      G
Sbjct: 862  QELEAGN----AAPVAFALSLLFTYLFLVAQYESWSIPTAVMMAVPIAILGAMATLFALG 917

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              F+L     ++ LIG S    +++ +  +  +       S  +   ++          T
Sbjct: 918  QPFDLYVQIGIVILIGMSAKVAILIVEFAK--VLREEKGYSIIEAAKEAARLRFRAVQMT 975

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + A    V P+ +    G     S    +  G++++            + +   R +
Sbjct: 976  AFAFIWGVFPLVIASGAGAESRHSLGFAVFGGMILSTLIGTIFTPVFFVTMQSLRER 1032


>gi|303246348|ref|ZP_07332628.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio fructosovorans JJ]
 gi|302492411|gb|EFL52283.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio fructosovorans JJ]
          Length = 1049

 Score =  188 bits (477), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/522 (12%), Positives = 148/522 (28%), Gaps = 30/522 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   GL            + ++P  +P                      
Sbjct: 9   RPVFSIVISLVIVLAGLAAI-----KNLPIAQYPDIIPPEV---------NVSTSYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + +        +     +  + ++FA     +     V   +Q 
Sbjct: 55  PEVIAATVAAPLEQQINGVDNMLYMRSTSSGDGSLSMAVTFAVGTDPDQNTINVNNRVQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + ++  +         + +           A+  S  ++   +D++       
Sbjct: 115 ALTTLPAEVQRQGVTVRKRSSNILQVISFESPTKRYDAVYLSNYVLVNVLDELKRLPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L QL  T A ++      N        G            
Sbjct: 175 DASIFGAKDYSMRVWLQPDKLAQLGLTPADVAAAIKEQNAQFAAGRIGAEPTESE--KPV 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +   V   G  L            +    I   +             +           
Sbjct: 233 AINYMVTTKGRLLT---------PEEFGNIILKAQPDGSVLRLKDVARVELGAKDYTAVA 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            ++               +   T +      A L           V          S   
Sbjct: 284 KISGNPAVNIGVYLSPGANALNTADLVTAKLAELSKRFPDGISYKVPLDTTTFVRVSIEE 343

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+F+ +   +  L+   ++ +++I T A +  LG T+   ++ G+V
Sbjct: 344 VIHTLVEAMILVFFVVFIFLQNFRATLIPCLAVPVSIIGTFAGMYALGFTINTLTLFGMV 403

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +       +     +           +    +      V + F 
Sbjct: 404 LAIGIVVDDAIVVLENVERIMSTEKLPPRQATAKAMEEVTGPVVAIVLVLCAVFVPVAFL 463

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           G   G   + FAIT+ +S++IS   A+++  A+   +++   
Sbjct: 464 GGLTGQMYKQFAITIAVSVVISGLVALTLTPALCASLLKPGH 505



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 81/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +      +        +        +++    ++     ++++  P     
Sbjct: 268 DVARVELGAKDYTAVAKISGNPAVNIGVYLSPGANALNTADLVTAKLAELSKRFPDGISY 327

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
              +      R  I + I  ++ + I +   ++I  + +   L     + + I  T    
Sbjct: 328 KVPLDTTTFVRVSIEEVIHTLVEAMILVFFVVFIFLQNFRATLIPCLAVPVSIIGTFAGM 387

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N   +  ++  IG  V+D +VV + +     + T  +  R    K++ E  G 
Sbjct: 388 YALGFTINTLTLFGMVLAIGIVVDDAIVVLENV--ERIMSTEKLPPRQATAKAMEEVTGP 445

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V   +      +P+A  G   G +   FAI +A  +V++   ++ +   +   +  
Sbjct: 446 VVAIVLVLCAVFVPVAFLGGLTGQMYKQFAITIAVSVVISGLVALTLTPALCASLLK 502



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 18/154 (11%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
              ++   +  + +++ +  ++ +W      I  +   +   +      G+  ++    A+
Sbjct: 871  SSMMVFGMGIVMVILILAAQYERWTLPFAVIMAVPFALFGAIAAVFGRGLSNDIYFQIAL 930

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG +  + +++ +     +          +    +        + TS+A  +  LP+
Sbjct: 931  VTLIGLAAKNAILIVEFA---VLEVKAGKDLTEAALSAAKLRFRPIIMTSLAFILGCLPL 987

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            A+    G +   +    +  G++ A   + F   
Sbjct: 988  AISTGAGANSRHAIGTGVIGGMLGATLLAPFFIP 1021


>gi|327392950|dbj|BAK10372.1| protein-export membrane protein SecF [Pantoea ananatis AJ13355]
          Length = 303

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 90/286 (31%), Positives = 158/286 (55%), Gaps = 2/286 (0%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           MR       IS L  I SI ++   G N+G+DF GG  + +   +P DL  +R+ L    
Sbjct: 1   MRWDTLAFIISGLLIIISIAIVGVRGFNWGLDFTGGTVIEINLEKPADLDTIRAELVKAG 60

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             +   QNF   ++ +VR+    G         ++V          +T++  E VGP + 
Sbjct: 61  FQEPLIQNFGSSRDVMVRMPPVTG-PAGTELGNKVVTVINQTTQQNATVKRIEFVGPSVG 119

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            +L + G + ++ + IA+LIYI IRF+W  ALG +  L  D+  T G  +LF +E +LT 
Sbjct: 120 SDLAQAGALALLSALIAILIYIGIRFEWRLALGTVLALAHDVIITCGLLSLFRVEVDLTI 179

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           VA+++++IGYS+NDK+VV DR+R+N +      S+ D+ + S+ +TL R++ TS+     
Sbjct: 180 VASLMSVIGYSLNDKIVVSDRIRENFRKIRRGSSY-DITNVSLTQTLSRTLITSLTTLAM 238

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +L + ++GG+++  F++ M  G+ +   SSI++++ + L +   R 
Sbjct: 239 ILILFIFGGALLKGFSLTMLIGVTIGTISSIYVSSALALKLGMKRE 284


>gi|296156855|ref|ZP_06839692.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. Ch1-1]
 gi|295892741|gb|EFG72522.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. Ch1-1]
          Length = 1055

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 57/537 (10%), Positives = 132/537 (24%), Gaps = 39/537 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G++           + +FP   P               + +    
Sbjct: 10  RPIFASVLSIILVVAGIVAMF-----NLPIAQFPDIAPPT-------------ITVSATY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + Q  +  L   +        +   S       +T  F            V  
Sbjct: 52  PGASAEVVAQNVAAPLEQQVNGADNMMYMNSSSSSTGNMTLTAYFNIGTDPSLAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L        +         +++               +       +D +   
Sbjct: 112 RVNLALPTLPDSVTAQGVSVQKRSSAFMMVIAIYSPDNGFDQSYVANYANVYVLDALKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ +L  T A +       N        G        
Sbjct: 172 PGANQASIFGSADYAMRIWIKPDRMAKLGITVADVQQAISNQNQQFSAGRLGQSPTSGPV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  K  ++                   + +      A         +        
Sbjct: 232 QQTFPVATKGRMT------------EPADFDNIILRAGSGDASTVRIKDIGHAELGAKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +        L     P     V          
Sbjct: 280 SLRGRYNGKTATLIAVYQQPGANALQVAKQVRATLEQLHKSFPPGLKYEVALDTTEFVQE 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  LV   ++ ++++     +   G ++ + ++
Sbjct: 340 SIGEVVHTLRDAIILVILVVFIFLQSFRATLVPILAVPVSILGAFIGMLAFGFSINMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473
            G+VL IG+ VD  I+V E +             +              I    +   I 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMTEFGLPPKEAAKHAMDEVTGPVIAIVLVLLAVFIP 459

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
              L    G   + FA+T+ +S+++S   A+++  A+   +++    +         
Sbjct: 460 VAFLSGITGQLYKQFAVTIAVSVVLSGIVALTLSPALAAILLKPGTHRKNRFFLWFN 516



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/196 (15%), Positives = 77/196 (39%), Gaps = 8/196 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             LE + K     +      +T     +   E++      +I+  + + I++     +  
Sbjct: 312 ATLEQLHKSFPPGLKYEVALDTTEFVQESIGEVVHTLRDAIILVILVVFIFLQ---SFRA 368

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  I  + + I         FG   N+  +  ++  IG  V+D +VV + + +NM  + 
Sbjct: 369 TLVPILAVPVSILGAFIGMLAFGFSINMLTLFGMVLAIGIVVDDAIVVIENVERNMTEF- 427

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             +  ++    +++E  G  +   +      +P+A      G +   FA+ +A  +V++ 
Sbjct: 428 -GLPPKEAAKHAMDEVTGPVIAIVLVLLAVFIPVAFLSGITGQLYKQFAVTIAVSVVLSG 486

Query: 810 SSSIFIAAPILLFIYD 825
             ++ ++  +   +  
Sbjct: 487 IVALTLSPALAAILLK 502



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 79/222 (35%), Gaps = 6/222 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
             NF              +       ++I + V                ++     I+   
Sbjct: 817  NNFPAAKITGDSAPGHSSGESIAAMEQIAQEVLGEGYGYAWSGQAYEEKQAGSTAILVFG 876

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             + + + + +  +++ W   +G +  +   +   L    L G+E ++     +  LI  +
Sbjct: 877  FALLMVFLILAAQYEKWSLPIGVLLAVPFALFGALIGILLRGMEDDVYFQIGLTVLIALA 936

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++++   +  +    S++  D   K+    L   + TS+A  +  +P+A+     
Sbjct: 937  AKNAILIFEFAVEMREKE--SLNPYDAALKAAKLRLRPIIMTSLAFILGCVPLAIASGAS 994

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +   S    + FG++ A   ++F        +    +++ +
Sbjct: 995  AASRRSLGTGVIFGMLGATVIALFFIPMFFWGLETLSSRSRK 1036


>gi|300718173|ref|YP_003742976.1| Acriflavine resistance protein B [Erwinia billingiae Eb661]
 gi|299064009|emb|CAX61129.1| Acriflavine resistance protein B [Erwinia billingiae Eb661]
          Length = 1039

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 71/683 (10%), Positives = 185/683 (27%), Gaps = 39/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G L  L     +  ++++P+  P               +      
Sbjct: 8   RPIFAWVVAIIVMLVGGLSIL-----KLPINQYPNIAPPAI---------SVQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            +     +    ++  S +              +  I ++F      +    +V   +  
Sbjct: 54  AETAQNTVVQVIEQQLSGIDNMRYIESQSNSDGSATIIVTFDQGTDPDIAQVQVQNKVSL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +  +  +     +   +++             + +  ++ +  D I  ++   
Sbjct: 114 AESQLPTEVTQQGINVRKYQANFMLVVSLISTNGKMSNGDLADLLVSKLEDPISRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    DP++L +     + +S      N                     
Sbjct: 174 DFMVMGS-EYGMRIWVDPAKLYKYQLIPSDVSTAITQQNVQISSGKLAGLPTIPGAKFSA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    +        +        +           
Sbjct: 233 TIIGKTRL-------------QSVKEFENILLKVNPDGSQVRLRDVAKVDLGPQDYSISA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    I         ++                     S   
Sbjct: 280 TYNGKPSAGMALRLASGANVLDAINAVRATVDGIKGSLPDGVQVTFPYDTSPVVSSSIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+ + +   +  L+    + + ++ T  +LS  G T+   ++ G+V
Sbjct: 340 VVKTLFEAIALVFVVMLVFLQNLRATLITTMVVPVVLLGTFGILSACGYTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +F   +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMHDEGLDPKAATLKSMEQIQGALFGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+IT+  ++ +S+  A+    A+   I++              F    D 
Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVLMALIFTPALCATILKPGSADHKTTGLAGWFNRKFDS 519

Query: 538 IAIQFMR------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             + +        A+     +  L  + +   LFT      +  +    + +    P + 
Sbjct: 520 GTLHYSNSVGHVIAKRNLFLVIYLLLVVATGYLFTRVPTSFLPDEDQGVMMMQTTLPANA 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S  R+      I     +N     +      +        T +  ++ K   +     T+
Sbjct: 580 SSERTQQVLDDIQSWLLKNEPEVSSVFSPNGFSFSGRGENTAMSFVLLKPWAQRNSEQTV 639

Query: 652 QNTEIVGPKISRELIRKGIVGVI 674
           Q            L    +  ++
Sbjct: 640 QKLAQRTMAHFGSLQDAKVFALV 662



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 74/237 (31%), Gaps = 8/237 (3%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
               + G   ++ F+G     +      G S                              
Sbjct: 801  GKWEYGSPRYERFNGISAVEIMGSPAAGYSSGDATKAVEEIAAKLPAGFKVQWHGLSYEE 860

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
                 +      + +++  + +     +   W      I  + L +  T+    + G+E 
Sbjct: 861  QSSGSQTPALYTLSILVVFLCLA---ALYESWSIPFSVILVVPLGVLGTILAVLMRGLEN 917

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++     +LT +G +  + +++ +  ++  +         +   ++    +   + TSMA
Sbjct: 918  DVFFQVGLLTTVGLAAKNAILIVEFAKELHEKEGKG--LVEAAMEAAKLRIRPIIMTSMA 975

Query: 779  AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              + VLP+ +    G     S    +  G++ A   +IF      + +    +   +
Sbjct: 976  FVLGVLPLTLSSGAGAGSQHSIGTAVVGGMITATFLAIFFVPMFYVVVAQRFSGKKK 1032



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 76/194 (39%), Gaps = 8/194 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    ++ +K  + + V ++   +T  V      E+++     + +  + ML+++    
Sbjct: 304 NAVRATVDGIKGSLPDGVQVTFPYDTSPVVSSSIEEVVKTLFEAIALVFVVMLVFLQ--- 360

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + +  T G  +  G   N   +  ++  IG  V+D +VV + +    
Sbjct: 361 NLRATLITTMVVPVVLLGTFGILSACGYTINTLTMFGMVLAIGLLVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            ++   +  +    KS+ +  G     ++     +LPMA + GS       F+I +   +
Sbjct: 419 VMHDEGLDPKAATLKSMEQIQGALFGIALVLSAVLLPMAFFSGSTGVIYRQFSITIVSAM 478

Query: 806 VVAASSSIFIAAPI 819
            ++   ++     +
Sbjct: 479 ALSVLMALIFTPAL 492



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 68/541 (12%), Positives = 142/541 (26%), Gaps = 63/541 (11%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            + N +LVI   ++   G          +      P       +             L   
Sbjct: 534  KRNLFLVIYLLLVVATG------YLFTRVPTSFLPDEDQGVMM---------MQTTL--- 575

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFK-----------EN 110
              +  +   Q   D+++S+L K      S     N  + S                   N
Sbjct: 576  PANASSERTQQVLDDIQSWLLK-NEPEVSSVFSPNGFSFSGRGENTAMSFVLLKPWAQRN 634

Query: 111  IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
                V    Q   +      +   +       +  + +    D  +     +  E +   
Sbjct: 635  SEQTVQKLAQRTMAHF-GSLQDAKVFALVPPAVMELGNATGFDFFLQDTDNKGHEALMAA 693

Query: 171  IDQIGISESTIQRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
             +Q     +  +RL + R        Q     D  R R L  +   ++        S   
Sbjct: 694  RNQFLGMAAQDKRLMATRPNGMEDEPQYHLIIDDERARALGLSLEDINDTLSTAWGSTYV 753

Query: 226  FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
              F           Q     +V                 T + +    F           
Sbjct: 754  NQFIYHGRVKKVYLQGNAGSRV-----------------TPEDLNKWYFRNTSGEMVPFS 796

Query: 286  TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
               +           R      +           SG+ T     I A +     +     
Sbjct: 797  AFGSGKWEYGSPRYERFNGISAVEIMGSPAAGYSSGDATKAVEEIAAKLPAGFKVQWHGL 856

Query: 346  IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
              EE++ G      S       +   +V + L  +             + L V+ T+  +
Sbjct: 857  SYEEQSSG------SQTPALYTLSILVVFLCLAALYESWSIPFSVILVVPLGVLGTILAV 910

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIF 464
             + G    +    G++  +GLA  + IL+ E  +E   ++ + +  +           I 
Sbjct: 911  LMRGLENDVFFQVGLLTTVGLAAKNAILIVEFAKELHEKEGKGLVEAAMEAAKLRIRPII 970

Query: 465  DSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             +++  ++  + L      G G+       +   ++ + F AI  V    + + +    K
Sbjct: 971  MTSMAFVLGVLPLTLSSGAGAGSQHSIGTAVVGGMITATFLAIFFVPMFYVVVAQRFSGK 1030

Query: 522  S 522
             
Sbjct: 1031 K 1031


>gi|149176855|ref|ZP_01855465.1| acriflavine resistance protein B [Planctomyces maris DSM 8797]
 gi|148844292|gb|EDL58645.1| acriflavine resistance protein B [Planctomyces maris DSM 8797]
          Length = 1068

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/545 (12%), Positives = 158/545 (28%), Gaps = 31/545 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  M+  IG L           + ++PS  P   +                  
Sbjct: 10  RPIFASVLSFMVVLIGSLA-----YFALPVSQYPSVAPPTIV---------VRASYPGAT 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        S       ++T++F      ++    V   +  
Sbjct: 56  PQVIADTVATPIEQEMNGVDNMLYMESSSSNDGTMQLTVTFKLGTNLDDAQVMVQNRVAV 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L    ++  + T  +    +++   N        +  S     +  D +   +   
Sbjct: 116 AEARLPEAVRQIGITTRKQIPDMLMVVHLNSPDNSRDQLYISNFAFLRIRDSLMRLDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +    D  ++  +  T   +       N      + G   + +S   Q 
Sbjct: 176 DIRVAGGNEYSMRIWLDIEKMTHVGLTVGDVVQQVRQQNAQVAAGVIGQPPIDESGAFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +       R         I           
Sbjct: 236 NVTTQGRLQEED-------------EFGQIVVKRGDDGRVTRLSDVARIELGAQDYSRIS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +   +   +     +      A L           +          S + 
Sbjct: 283 YLDGKPAVAILIYQRPGTNAVDAADEVKQTMANLNKDFPEGVGYEIAYNPTDYVEESIAE 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++ +F+ +   +  ++   +I +++I T A + L G TL   S+ G+V
Sbjct: 343 VFETLYITTILVVLTVFLFLHGWRPTIIPVIAIPISLIGTFAAMQLFGVTLNTLSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +         S +  + +  +   V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERLIADGLNPREATHKAMDEVSSALVATTLVLIAVFVPTMFVP 462

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S   S F ++++  A+   +++ K  +   +  L          
Sbjct: 463 SLSGKFYQQFALTIAISTGFSTFVSLTLSPALCALLLKPKNAERNRMGRLVDLLFGWFFR 522

Query: 539 AIQFM 543
           A    
Sbjct: 523 AFNRF 527



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 85/247 (34%), Gaps = 7/247 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R  L +     IS+ +       L+  +       A   V + +     +      
Sbjct: 266 SDVARIELGAQDYSRISYLDGKPAVAILIYQRPGTNAVDAADEVKQTMANLNKDFPEGVG 325

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +        +   +        I + + +L        W   +  +  + + +  T   
Sbjct: 326 YEIAYNPTDYVEESIAEVFETLYITTILVVLTVFLFLHGWRPTIIPVIAIPISLIGTFAA 385

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LFG+  N  ++  ++  IG  V+D +VV + +    +L    ++ R+   K+++E   
Sbjct: 386 MQLFGVTLNTLSLFGLVLAIGIVVDDAIVVVENV---ERLIADGLNPREATHKAMDEVSS 442

Query: 771 RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDW 826
             V T++      +P        G     FA+ +A     +   S+ ++  +  L +   
Sbjct: 443 ALVATTLVLIAVFVPTMFVPSLSGKFYQQFALTIAISTGFSTFVSLTLSPALCALLLKPK 502

Query: 827 RAKNARI 833
            A+  R+
Sbjct: 503 NAERNRM 509



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/215 (8%), Positives = 65/215 (30%), Gaps = 11/215 (5%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                   +      +E +  +                  +    ++    + V+     +
Sbjct: 837  QTAPGYSTGQSLATMEQLADENLPPGFGYAWTEIAYQERQAGNTIVFLFPLAVLF----V 892

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++ W   L  I  + L +   +      G++ N+      + L+G +  + ++
Sbjct: 893  FLTLAAQYESWVLPLAIILIVPLCLLFAIVGIWFRGMDNNILTQIGFIVLVGLACKNAIL 952

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + +  +                  +    L   + T+ +  + V+P+ +    G  +   
Sbjct: 953  IVEFAK---AEEDAGKDRFQAAVDACRLRLRPILMTAFSFILGVIPLLIATGAGFEMRRV 1009

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                +  G++      +F+     + +  +  K  
Sbjct: 1010 LGTAVFSGMLGVTLFGLFLTPVFYVVLRRFARKPK 1044


>gi|24114832|ref|NP_709342.1| acriflavine resistance protein [Shigella flexneri 2a str. 301]
 gi|24054065|gb|AAN45049.1| acriflavine resistance protein [Shigella flexneri 2a str. 301]
 gi|313647576|gb|EFS12026.1| Multidrug resistance protein MdtF [Shigella flexneri 2a str. 2457T]
          Length = 694

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGASPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          L A        +           
Sbjct: 276 STVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVIYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+ +S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMRLSVFVAMSLTPALCATI 496



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 82/237 (34%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 258 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + I++  + +   +     + + I 
Sbjct: 318 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVIYLFLQNFRATIIPTIAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     V  ++      +PMA      G +   F+I +    + +   S+F+A  +
Sbjct: 436 GQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMRLSVFVAMSL 488


>gi|116686343|ref|YP_839590.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia HI2424]
 gi|116652058|gb|ABK12697.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia HI2424]
          Length = 1065

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 68/688 (9%), Positives = 183/688 (26%), Gaps = 48/688 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G             + ++P+  P               + +   
Sbjct: 7   KRPILAWVMAIVIMLVGAAAV-----TSLPVAQYPTIAPP-------------SVQVTAT 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L        +   S    Q  ITL+F      +    +V 
Sbjct: 49  YPGASADTVAATVTQVIEQKLSGIDNVLYMSSTSSSAGQATITLTFNPGTNPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  +         +++   +      ++++    I  +  D +  
Sbjct: 109 NKVTQATPTLPQTVQEQGVQVAKASTSFLMIVALSSPGGTWNSVDLGNIIATRIEDPLAQ 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P +L     T + ++      N        G     DS
Sbjct: 169 LNGVGDVTLFGAQ-HAMRIWLNPVKLHSFGLTPSDVTTAITNQNVELSTGQVGGSPATDS 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     ++                +    +        R        +      
Sbjct: 228 QAINATIRSSSLLT-------------TADQFAGILLRVNSDGSRVLLKDVARVEVGGDS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L     +          +            A ++                    
Sbjct: 275 YDTSSRLNGKPASALAIKLATGANALDAANAVRAKLAEIQLQLPKDVAISYPYDTTPFVR 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+    + + ++ T  ++S++G ++ + S
Sbjct: 335 ISIEEVVKTLFEAVVLVFLVMYLFLQNVRATLIPTIVVPVALLGTFGVMSMIGFSINVLS 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     + +     +      +    +           +
Sbjct: 395 MFAMVLAIGLLVDDAIVVVENVERIMSEEKLGPKEATHKAMGQITGALVGVTTVLTAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FF G      R F+IT+  ++L+S+  A+++  A+   +++   ++  +      +F
Sbjct: 455 PMAFFAGSTGAIYRQFSITIVSAMLLSVMLALTLTPALCATLLKRADVEHHEKRGFFGWF 514

Query: 533 LIP-------DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        ++  + AR     +        + LL+    +  +  +      V  
Sbjct: 515 NRWFAKSNAGYSSSLARVVARPARYMLLYGAIAGVVALLYVTLPSSFLPDEDQGYFIVSI 574

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           + P      R+      +     ++  G K  +    +          +  +  K  +  
Sbjct: 575 SAPAGTPASRTLKTVEAVEQYVLKDEPGVKQVIAINGFSFNGQGQNNAIAFVTLKDWSLR 634

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +         +         I  +
Sbjct: 635 GSRDSASAIIARASQHFAGNRDARIFVL 662



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 84/244 (34%), Gaps = 6/244 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V          D S +      + L        +++     +     +I   +
Sbjct: 258 SRVLLKDVARVEVGGDSYDTSSRLNGKPASALAIKLATGANALDAANAVRAKLAEIQLQL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         R  I + +  +  + + + + +++  +     L     + + + 
Sbjct: 318 PKDVAISYPYDTTPFVRISIEEVVKTLFEAVVLVFLVMYLFLQNVRATLIPTIVVPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  ++ G   N+ ++ A++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFGVMSMIGFSINVLSMFAMVLAIGLLVDDAIVVVENV--ERIMSEEKLGPKEATHKAM 435

Query: 766 NETLGR--SVYTSMAAFISVLPMAVWGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G    V T + A    +         I   F+I +   ++++   ++ +   +   
Sbjct: 436 GQITGALVGVTTVLTAVFIPMAFFAGSTGAIYRQFSITIVSAMLLSVMLALTLTPALCAT 495

Query: 823 IYDW 826
           +   
Sbjct: 496 LLKR 499



 Score = 45.1 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++     +L  IG S  + +++ +  +    L     S  D + ++ +  L   + 
Sbjct: 936  GLSNDIYFKVGLLATIGLSTKNAILIVEFAKD---LQAQGHSLVDAVLEAAHMRLRPILM 992

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
            TS+A    VLP+ +    G     +    +  G++ A   +I
Sbjct: 993  TSLAFVFGVLPLVISTGAGAGARHAIGTGVTGGMIAATVLAI 1034


>gi|327402370|ref|YP_004343208.1| acriflavin resistance protein [Fluviicola taffensis DSM 16823]
 gi|327317878|gb|AEA42370.1| acriflavin resistance protein [Fluviicola taffensis DSM 16823]
          Length = 1017

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 79/610 (12%), Positives = 180/610 (29%), Gaps = 43/610 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  ++   G++  +        +  FPS  P                      
Sbjct: 10  RPVLASVLSIIVVLFGVIGFIF-----LGVREFPSVDPPIIT---------VTTNYVGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +E  + +        +    ++ I + F  S   +N A+ V   +   
Sbjct: 56  PDVIESQITEPLEESINGISGIRTVTSTSSDGRSSIVVEFDLSVDLDNAANDVRDKVSAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D    ++V +     +I      +       +E +        +++   +   +
Sbjct: 116 IRNLPPDADPPVVVKSDANAETI--FSLTVQSDKKTLLELTDLGNNVFKERLQTIKGVSE 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP R+  L  T   +    +  N            +  +      
Sbjct: 174 IRIWGEKKFSMKFNLDPERMAGLGLTALDVKNALLNQNVELPSGRIEGNTVELTIRTFGR 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                       +    I   +       +        P       R 
Sbjct: 234 LTT-------------------EEEFNNLIVAKKGTQIVRLKDVGRANLAPENERTLLRG 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +     + +   +    ++        ++          V   +      S S  
Sbjct: 275 NHGIPMIGIAINPQPGANYIEIVDEIYKKVEQIKKELPKDVHLGVALDSTQNIRKSISEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++++F+ +   +  L+   +I +++I T  ++ +   ++ L ++ GIVL
Sbjct: 335 EETILIAFGLVVVIIFLFLRDWRTTLIPIIAIPISLIGTFFIMYISNFSINLLTLLGIVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             GL VD  I+V E I     + +    +   G       I  + IT     + + F   
Sbjct: 395 ATGLVVDDAIVVMENIYARVERGEDPKEAAHKGSKEILFAIISTTITLTTVFLPIIFLDG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF----FLIP 535
             G   R F + +  S++IS F ++++   M   +++ K+  S        +        
Sbjct: 455 LTGRLFREFGVVVAGSVIISAFISLTLTPMMSARLLKKKEKHSRFYKMTEVWLDKLMSGY 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                +FM+  +    +     +  I        +     +   +  + +N P   S  R
Sbjct: 515 RNSLTKFMKRPWIAFILMAFCIVL-IIWNGLSLKSELAPMEDKGRFQIRSNAPEGTSFER 573

Query: 596 SNLESLQIGD 605
            +    QI D
Sbjct: 574 MDFHQQQIID 583



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 90/259 (34%), Gaps = 13/259 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           ++A +   +  ++    +    +       G     +          A    +     K 
Sbjct: 244 IVAKKGTQIVRLKDVGRANLAPENERTLLRGNHGIPMIGIAINPQPGANYIEIVDEIYKK 303

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI------VGVIISAIAMLIYIWIRFKWYFALGA 696
            E +     ++  +     S + IRK I      + +    + ++I++++R  W   L  
Sbjct: 304 VEQIKKELPKDVHLGVALDSTQNIRKSISEVEETILIAFGLVVVIIFLFLR-DWRTTLIP 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           I  + + +  T     +     NL  +  ++   G  V+D +VV + +            
Sbjct: 363 IIAIPISLIGTFFIMYISNFSINLLTLLGIVLATGLVVDDAIVVMENI---YARVERGED 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            ++   K   E L   + T++      LP+    G        F + +A  ++++A  S+
Sbjct: 420 PKEAAHKGSKEILFAIISTTITLTTVFLPIIFLDGLTGRLFREFGVVVAGSVIISAFISL 479

Query: 814 FIAAPILLFIYDWRAKNAR 832
            +   +   +   + K++R
Sbjct: 480 TLTPMMSARLLKKKEKHSR 498



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 56/140 (40%), Gaps = 8/140 (5%)

Query: 697  ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            I    + +      F+L       N+ +   ++ LIG    + +++ +      +     
Sbjct: 880  IILFTVPLALAGALFSLWLTDQTLNIFSKIGIIVLIGLVTKNGILIVEFAN---QRREDG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASS 811
            +S ++ I  +  +     + T++A  +  LP+A+  G       S  I +  G+  +   
Sbjct: 937  LSIKEAIIDACAQRFRPILMTTLATILGALPIALALGDAATSRISMGISIVGGLAFSLIL 996

Query: 812  SIFIAAPILLFIYDWRAKNA 831
            ++F+   + +++   ++K  
Sbjct: 997  TLFVIPGLYIYLTSKKSKLK 1016


>gi|212711289|ref|ZP_03319417.1| hypothetical protein PROVALCAL_02361 [Providencia alcalifaciens DSM
           30120]
 gi|212686018|gb|EEB45546.1| hypothetical protein PROVALCAL_02361 [Providencia alcalifaciens DSM
           30120]
          Length = 1052

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 72/694 (10%), Positives = 179/694 (25%), Gaps = 55/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    GLL  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIITMLAGLLAII-----KLPVAQYPTIAPPA-------------VSISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADASTVQNTVTQVIEQNMNGIDNLVYMSSTSDSSGSASITLTFEAGTDGDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++            + +  +     D +   
Sbjct: 110 KLQLAMPLLPQEVQQQGISVDKSTSSFLMVAGFISKNGSMGQYDIADYVGSNIKDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P +L +    T+ +     + NN       G        
Sbjct: 170 NGVGETQLFGTQ-YAMRIWLKPEQLVKYNMATSDVINAIRVQNNQVAAGQLGGTPPVAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +S +              +    +        +        +       
Sbjct: 229 RLNVSIIAQTRLSNVE-------------EFSNILLRVNQDGSQVRLKDVATVQLGAENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A +          +           
Sbjct: 276 STVARFNGMPAAGIGIKLATGANALDTANNVRAALADMEPFFPEGLEVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV++V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++
Sbjct: 336 SINEVVKTLVEAIMLVVVVMYLFLQNIRATLIPTIAVPVVLLGTFAILSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLPPKEATKKSMGQIQGALVGIAMVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+L+S+  A+ +  A+   +                   
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSSMLLSVLVAMILTPALCATMLKPIEKGSHGSTKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +     +     D ++        + V   IL    +   +         + +G     V
Sbjct: 516 NRVFEKQAHHYTDSVSRMLNGTGRYLVIYVILVVGMAFMFVRLPSSFLPAEDQGVFLSMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L+ +          D  KN                + + +    + 
Sbjct: 576 QLPPGSTQEQTEVILDEVSEYFRV----DEGKNVESVFTVGGFSFAGAGQNMGLAFVVLK 631

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                   +N        +   + K     I + 
Sbjct: 632 NWDERKGKENHVDAIVARANAALSKKQGAFIYAF 665



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      +        +        +++     +      +    
Sbjct: 258 SQVRLKDVATVQLGAENYSTVARFNGMPAAGIGIKLATGANALDTANNVRAALADMEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + +++ +++  +     L     + + + 
Sbjct: 318 PEGLEVVYPYDTTPFVKISINEVVKTLVEAIMLVVVVMYLFLQNIRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   + A++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   ++++   ++ +   +
Sbjct: 436 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSSMLLSVLVAMILTPAL 492



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 7/223 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L+  +             N +  +  Q   +  Q+    M+  +      L      E
Sbjct: 802  AFLDESKDPWKFGSPRLERYNGVPAMNIQGQATEGQSTGAAMLMMEKLTTENLPAGIGYE 861

Query: 656  IVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
              G      L       +  IS I + + +   ++ W      +  + L +   L F ++
Sbjct: 862  WTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSVPFSVMLVVPLGVIGALLFTSV 921

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G++ ++     +LT IG S  + +++ +  +  M+         +    ++   L   +
Sbjct: 922  RGLDNDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LIEATLDAVKMRLRPIL 979

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             TS+A  + V+P+      G +   S    +  G+  A S +I
Sbjct: 980  MTSLAFMLGVIPLVFSNGAGSAAQNSVGTGVLGGMFAATSLAI 1022


>gi|218532483|ref|YP_002423299.1| protein-export membrane protein SecF [Methylobacterium
           chloromethanicum CM4]
 gi|218524786|gb|ACK85371.1| protein-export membrane protein SecF [Methylobacterium
           chloromethanicum CM4]
          Length = 314

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 110/301 (36%), Positives = 175/301 (58%), Gaps = 7/301 (2%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN- 586
           +    L PD     FMR R     +S + S+ ++ L  T GLNYGIDFKGG  + + A  
Sbjct: 1   MRLLRLWPDESHFDFMRFRRVTFPLSAVMSVVTLVLFITVGLNYGIDFKGGTLVELQAKA 60

Query: 587 -RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            R  D++ +R        G+   Q   GE   LVR   Q G+         +++K     
Sbjct: 61  GRTADVAEIRHTANGFGFGETEVQELGGEGQVLVRFPLQAGEQGQTA----VMQKAHAAF 116

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                 + TE VGP++S EL++ G +GV++S +A+L+Y+W RF+   ALGAI   + DI 
Sbjct: 117 DASYDFRRTETVGPRVSGELVQSGTIGVVLSVLAVLLYLWFRFERELALGAIVGTLHDIV 176

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T+G F +  IEFN+T++AA+LT++GYS+N+ VVV+DR R+ M+ Y  +I   +L++ SI
Sbjct: 177 LTVGVFIITRIEFNMTSIAAILTIVGYSLNETVVVFDRTRELMRRY-KTIPVVELLNLSI 235

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           N T+ R+V TS++  +S++ + ++GG  I  FA+ M  G+V+   S+IF++ P L++I  
Sbjct: 236 NSTMSRTVMTSLSTTLSLVALVLFGGEAIKGFAVVMLCGVVICTYSAIFVSTPSLIYIGL 295

Query: 826 W 826
            
Sbjct: 296 R 296


>gi|34497696|ref|NP_901911.1| acriflavin resistance protein B [Chromobacterium violaceum ATCC
           12472]
 gi|34103552|gb|AAQ59913.1| acriflavin resistance protein B [Chromobacterium violaceum ATCC
           12472]
          Length = 1042

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 79/645 (12%), Positives = 172/645 (26%), Gaps = 46/645 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL       L    + ++P   P   +             +    
Sbjct: 9   RPVFAWVLAIVIMLAGLFA-----LRALPVSQYPDIAPPTVM-------------VSASY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   LK           S    Q +I L+F      +    +V  
Sbjct: 51  PGASAQVVETSVIQVLEQELKGLDNLMYFSSTSSSSGQAEIMLTFRQGANPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  + ++L    ++N L     +   ++++            + +  +     D +   
Sbjct: 111 KVSQMLARLPQQVQQNGLSVQKMQGDFLLIASFYDISGQRGDTDIADWLASNIQDPLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L       + +S      N        G        
Sbjct: 171 DGVGSVRAFGAP-YAMRIWLDPHKLNSYGLIPSDVSAAVSKQNTEVSVGELGALPSPPGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               +V     +S                +    +                 +       
Sbjct: 230 QLNAMVTAWSRLS-------------TPEQFRGIVVKALPDGGAVRLGDVARVELGQEDY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +   T E      A L+    P       E        
Sbjct: 277 GSSSRLNGHPASGLAVMLAPGANALATAEAVKARVAELQRNFPPGIRVAYPEDTTHFVRL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + ++ T  +L+  G  +   ++
Sbjct: 337 SIRAVMETLLEAVALVVLVMFVFLRNWRATLIPALTVPVVLLGTFGVLAAAGFGINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +           +    +      + 
Sbjct: 397 FGMVLAIGLLVDDAIVVVENVERVMHEQGVDAHAATVRSMGEIGGALVGIGLVLGAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPL 528
           + FFGG      R F+IT+  ++ +S+ TA+++  A+   +            +      
Sbjct: 457 MAFFGGSVGVIYRQFSITIVAAMALSVLTALTLTPALCATLLRPEKPSDNGPLAAFERRF 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R         +     R    G+  L     +  L+       I  +    + V    P
Sbjct: 517 LRLQSAYAERWLPAWLRRPLRGGLVYLALAAGLAALYPQLPTAFIPDEDQGTVMVQFTLP 576

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
              +  R++  +  +              +  L         Q  
Sbjct: 577 TGATHERADKVARAVEQHFLVTEKANVESVYMLSGFSFGGSGQNA 621



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 99/286 (34%), Gaps = 6/286 (2%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            G   S      +  +     L+    F+G +   +     V L  V       +    S
Sbjct: 220 LGALPSPPGQQLNAMVTAWSRLSTPEQFRGIVVKALPDGGAVRLGDVARVELGQEDYGSS 279

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +      + L  +     +++A    ++    ++    P               R  IR
Sbjct: 280 SRLNGHPASGLAVMLAPGANALATAEAVKARVAELQRNFPPGIRVAYPEDTTHFVRLSIR 339

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             +  ++ +   +++ +++  + W   L    T+ + +  T G  A  G   N   +  +
Sbjct: 340 AVMETLLEAVALVVLVMFVFLRNWRATLIPALTVPVVLLGTFGVLAAAGFGINTLTLFGM 399

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  IG  V+D +VV + +     ++   +       +S+ E  G  V   +      LPM
Sbjct: 400 VLAIGLLVDDAIVVVENV--ERVMHEQGVDAHAATVRSMGEIGGALVGIGLVLGAVFLPM 457

Query: 787 AVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           A +GG   VI   F+I +   + ++  +++ +   +   +      
Sbjct: 458 AFFGGSVGVIYRQFSITIVAAMALSVLTALTLTPALCATLLRPEKP 503



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 61/188 (32%), Gaps = 12/188 (6%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFA 693
               + +  I         E  G      L   G   ++ +   + +++    +   W   
Sbjct: 835  EAMRAVEAIAGKLPGTQYEWSGLSYQDRL-SSGQTPLLYAVSILFVFLCLAALYESWLVP 893

Query: 694  LGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
               +T + L +    L   A  G+  ++     +L  IG S  + +++ +   +      
Sbjct: 894  CAVMTAIPLGVLGAVLAVMA-RGLANDIYFQVGLLATIGLSAKNAILIIE-FAE--AAIR 949

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAA 809
                       +  + L   + TS+A  + V P+   GG       +    +  G++ A 
Sbjct: 950  RGDDALSAALAAARQRLRPILMTSLAFGVGVAPLVWAGGPGAGSQNAIGAAVLGGVLSAT 1009

Query: 810  SSSIFIAA 817
              ++F   
Sbjct: 1010 LLTLFFVP 1017


>gi|94266784|ref|ZP_01290450.1| Hydrophobe/amphiphile efflux-1 HAE1 [delta proteobacterium MLMS-1]
 gi|93452553|gb|EAT03136.1| Hydrophobe/amphiphile efflux-1 HAE1 [delta proteobacterium MLMS-1]
          Length = 1041

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 80/683 (11%), Positives = 190/683 (27%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+      L    ++++P  +P   +                 +
Sbjct: 8   RPIFASVISIIIVLAGLVS-----LRILPVEQYPDVVPPQVVVQAF---------YPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + +        +        IT+SFA     +  A  V   +Q 
Sbjct: 54  AEVIADSVAAPLEQEINGVDNMIYLESNSTDAGMLMITVSFAMGTDPDQAAIDVNNRVQA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L    ++  +         +++            I  S   +   ID++       
Sbjct: 114 ATARLPQQVRQQGVRVEARSTNMLMVPVLTSPDGRYDPIFISNYTLLNVIDELVRLPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +  RL +   T A ++      N        G +         Y
Sbjct: 174 EASLFGSQDYSMRIWLETDRLARYNLTPADVANALREQNAQFAAGRLGGQPAPPEVAFTY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    ++S                +    I   +                         
Sbjct: 234 AITSPGQLS-------------SPEEFENVILRADDQGGVLRLGDVARAELGSQNYDLSA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T E      A L+    P     +          S   
Sbjct: 281 TYNGTPAVPLGVYLQPGANALATAERVRETLAQLQENFPPGLQYEIPYDTTEFVRISIRE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++V F+ + + +  L+   +I ++++ T   + LLG ++ L ++ G+V
Sbjct: 341 VATTIFVATALVVLVTFVFLQHLRATLIPVAAIPVSLVGTFTGMYLLGFSINLLTLFGLV 400

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD+ I+V E +      K  + + +      +    +  S +  +     + F 
Sbjct: 401 LAIGIVVDNAIIVMENVERLIMEKGLNAYQAAVETVRQVAGAVVASTLVLVAVFAPVAFL 460

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK------KMKSIDINPLSRF 531
           GG +    R FA+T+ +S+++S   A+++  AM   ++  +        +  +       
Sbjct: 461 GGLSGELYRQFAVTIAVSVVVSGIVALTLTPAMCAKLLDKQPHTAAAPFRLFNRIFARLT 520

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                C      R            +   + L          + +G   +         L
Sbjct: 521 SFFVACAGFMLRRWAVGLTIFVACCAATIMLLERLPSGLVPQEDQGVALVVGQLPPASAL 580

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
               +  E L    ++ +      +      +              +        P    
Sbjct: 581 GRSEAVREELSRQLVAMEEVGEFTSIAGFDIFSMSLRSNSLLGFANLTDWRQRPAPEQHA 640

Query: 652 QNTEIVGPKISRELIRKGIVGVI 674
                    +   +    I   I
Sbjct: 641 GALADRIMGMGFAIQEANIFAFI 663



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 86/239 (35%), Gaps = 6/239 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  D+S          L        +++A    +     ++ E  P     
Sbjct: 265 DVARAELGSQNYDLSATYNGTPAVPLGVYLQPGANALATAERVRETLAQLQENFPPGLQY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  +  R  IR+    + ++   +++  ++  +     L  +  + + +  T    
Sbjct: 325 EIPYDTTEFVRISIREVATTIFVATALVVLVTFVFLQHLRATLIPVAAIPVSLVGTFTGM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   NL  +  ++  IG  V++ ++V + +     +    ++      +++ +  G 
Sbjct: 385 YLLGFSINLLTLFGLVLAIGIVVDNAIIVMENV--ERLIMEKGLNAYQAAVETVRQVAGA 442

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            V +++       P+A  G   G +   FA+ +A  +VV+   ++ +   +   + D +
Sbjct: 443 VVASTLVLVAVFAPVAFLGGLSGELYRQFAVTIAVSVVVSGIVALTLTPAMCAKLLDKQ 501



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 54/438 (12%), Positives = 127/438 (28%), Gaps = 22/438 (5%)

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS--LDMGFSRAYST 462
            L  +       SIAG  +       +++L    + +  ++      +  L          
Sbjct: 594  LVAMEEVGEFTSIAGFDIFSMSLRSNSLLGFANLTDWRQRPAPEQHAGALADRIMGMGFA 653

Query: 463  IFDSNITALIATVVLF------FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            I ++NI A I   +          G   VRG   T  +  L +     +  R  +  +  
Sbjct: 654  IQEANIFAFIPPPIQGMSLTGGVEGYLQVRGDVTTAEIEALANRVVQTANQRPELANVRS 713

Query: 517  YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
              +        +                    G     L+            +N     +
Sbjct: 714  TLEADIPRFKAVLDREKARAMGVPINEVFAAMGSTFGALYVNDFTYQGRPWQVNIQAAGE 773

Query: 577  GGIQLG----VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               +      +         V  ++L +L+    +            RL   P       
Sbjct: 774  FRDEPEDLRHIFVRSQSGAMVPLASLVTLERTSGTDTINRFNLYQSARLMADPAPGYTSG 833

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
            +  E ++  +  +          I            G +   +  + + + +  ++ +W 
Sbjct: 834  QAKEALEAVVAGLEAQQQTLLGWIGEAYQLEVAAGAGGLAFGLGMLMVFLILAAQYERWT 893

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L   T +   +        L G   ++     +L LIG +  + +++ +   +N    
Sbjct: 894  LPLAVATAVPFGVLGAASAAWLRGFPNDIYFQVGLLVLIGLAAKNAILIVEFAAQNRAA- 952

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV-V 807
               +S  +    +  +     V T++   I VLP+   GG   +        +  G++  
Sbjct: 953  --GMSPAEAAITAARQRFRAIVMTALTFIIGVLPLVFAGGAGAASRQEIGTVVLGGMLAA 1010

Query: 808  AASSSIFIAAPILLFIYD 825
            +  + IF+  P+   + +
Sbjct: 1011 STLALIFV--PLFYMLLE 1026


>gi|237746057|ref|ZP_04576537.1| hydrophobe/amphiphile efflux-1 family protein [Oxalobacter
           formigenes HOxBLS]
 gi|229377408|gb|EEO27499.1| hydrophobe/amphiphile efflux-1 family protein [Oxalobacter
           formigenes HOxBLS]
          Length = 1079

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 80/669 (11%), Positives = 190/669 (28%), Gaps = 42/669 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +IC  G +      + Q  ++++P+  P               + +    
Sbjct: 9   RPIFAIVVSLIICLAGGIA-----MTQLPVEQYPNMSP-------------VQITVTAQY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  L + +        +   S    Q ++T+ F      +    +V  
Sbjct: 51  PGADAKTVADSVAAPLENQINGIDNMLYMTSSSSSSGQLELTVYFDIDTDPDIAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  +  +N +    +    +++     D         +       +D I   
Sbjct: 111 RVNQATPQLPGEVTQNGVDVAKQSSSMLMMIGIYGDPARYSEDYVANYANVYVLDAIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +P ++     TT  +S      N        G        
Sbjct: 171 PGAGQASVMGSADQAMRIWLNPDQMASFRVTTTDVSQAVASQNRLFSAGQIGGEPAPPGT 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y                 + F   +    + I     G+         +        
Sbjct: 231 QQTYP------------AITQSPFQDASDYENMIIRASNDGSAIVRLKDIGSAAMGKQSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    +            +   +     +        L+AG       ++          
Sbjct: 279 LVDTQMNGQFSTFIQIVQQPGANALDVSKAVRAELDKLQAGFPDGIRYVIGIDTTDFVRI 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   +V+ V+++ +   +  L+A  +IF+ ++ T A + +LG T+ + ++
Sbjct: 339 SIQEVIKTLIIAIFIVIGVIYIFLQKYRATLIASSAIFVAILGTFAGMYVLGFTINMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +     +       +     +   S I  + +  +   V 
Sbjct: 399 FGLVLAIGLVVDDAIVVVENVERNIAQGNADRKQATIQAMNELVSPIVATVLVLVCVFVP 458

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSR 530
             F     G   + FAIT+ +S+ IS F A+++  A+           +           
Sbjct: 459 AAFVPGTTGQLYKQFAITIAVSVTISGFVALTLTPALCGSWLKQTPPPQKGPFAWFNKKF 518

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L            + + + ++ L  + +   +    L      +      ++A    D
Sbjct: 519 ATLTEHYGHWSASIIKHYWISLASLGIMVAAIFILFERLPTSFVPQEDQGYLIMAVILPD 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +    + +       +   G +       +   D+  +                   
Sbjct: 579 AASLERTKDVMDKVSGIVEKIPGVQTRAGISGFSLLDNGFKNSSGTYFMALKPFDERYKN 638

Query: 651 IQNTEIVGP 659
           I+  +    
Sbjct: 639 IRTAKEQNA 647



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  + S     Q   +  Q       F+  +Q    +++  ++ +     K+    P 
Sbjct: 263 VRLKDIGSAAMGKQSYLVDTQMNGQFSTFIQIVQQPGANALDVSKAVRAELDKLQAGFPD 322

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                  I      R  I++ I  +II+   ++  I+I   K+   L A + + + I  T
Sbjct: 323 GIRYVIGIDTTDFVRISIQEVIKTLIIAIFIVIGVIYIFLQKYRATLIASSAIFVAILGT 382

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N+  +  ++  IG  V+D +VV + + +N+         +    +++NE
Sbjct: 383 FAGMYVLGFTINMLTLFGLVLAIGLVVDDAIVVVENVERNIAQGN--ADRKQATIQAMNE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +   V T +      +P A   G+       FAI +A  + ++   ++ +   +     
Sbjct: 441 LVSPIVATVLVLVCVFVPAAFVPGTTGQLYKQFAITIAVSVTISGFVALTLTPALCGSWL 500

Query: 825 DWRAKNAR 832
                  +
Sbjct: 501 KQTPPPQK 508



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 56/157 (35%), Gaps = 3/157 (1%)

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
            V ++I                    ++     ++      I + + +  +++ W     
Sbjct: 844 KVMEEIAAETMPKDYAYGWSGVAYEEQKSGTSSMIVFAFGVILVFLILAAQYESWSLPAV 903

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  +   I  +L      G++ ++     +L +IG +  + +++ +   +         
Sbjct: 904 VLMAVPFGIIGSLLATWARGLDNDVYFQIGLLVMIGLAAKNAILIVEFAVE--LAKKPGT 961

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +  +   ++    L   + TS+A    V+P+A+  G+
Sbjct: 962 TLAEAAVQAGKIRLRPIIMTSLAFIGGVIPLAIAMGA 998


>gi|83593386|ref|YP_427138.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodospirillum rubrum ATCC
           11170]
 gi|83576300|gb|ABC22851.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodospirillum rubrum ATCC
           11170]
          Length = 1050

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 73/688 (10%), Positives = 173/688 (25%), Gaps = 50/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++P+  P               + +    
Sbjct: 8   RPVFAWVIAIIIMLSGALSILF-----LPIEQYPTVAPP-------------SVRINATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        I   S       ITL+F      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQQMNGLDNLRYISSTSDSSGSATITLTFNPEANPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +  T      +++               +  +     D +  +
Sbjct: 110 KLQLATPLLPQEVQQQGIQVTKANNTFLMVVGFISKDGSLTESGIADFVSSNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L     TT ++       N        G        
Sbjct: 170 NGVGEVTVFGSQ-HAMRIWLDPDKLISFGLTTTEVKSAITAQNAEVSAGQIGGAPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        I       
Sbjct: 229 ELNATIVAQTRL-------------ETVEEFGAILIRVNADGSQIRLRDIARIEIGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    S     +   T +        LR         I           
Sbjct: 276 GTMARYNGQPASGIGVSLATGGNALDTADAVRATIERLRPIFPQSVDVIYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +++  G T+   ++
Sbjct: 336 SIEEVVRTLGEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFGIMAAFGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +     ++  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMHEDNLSPRDATRKSMRQITGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           + FF G      R F++T+  ++L+S+  A+ +  A+              +       +
Sbjct: 456 MAFFSGSVGAIYRQFSLTVASAMLLSVLVAVVLTPALCATFLKPSHGDPYAKKGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        +     R   + +   ++     +  +         + +G +     
Sbjct: 516 RGFDRTNSFYQSSVGHVIGRKWRYLLIYGLILVGLGLLFVRLPSSFLPNEDQGILFAQAS 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                     +  L+ +       +    E  F V      G           +K     
Sbjct: 576 LPAGATQERTQEVLDQMSRHFRESEADFVEGVFTVNGFSFSGRGQNSGLAFVRMKNWDDR 635

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVG 672
                ++             +    I  
Sbjct: 636 DPDKGSVFAVARRAMGALSRIKEARIFA 663



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 90/231 (38%), Gaps = 7/231 (3%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV-L 635
           G I + V A+         + +E       +   ++G+    + +    G +   T   +
Sbjct: 247 GAILIRVNADGSQIRLRDIARIEIGAESYGTMARYNGQPASGIGVSLATGGNALDTADAV 306

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694
               +++  I P S             +  I + +  +  + I + + +++  +     L
Sbjct: 307 RATIERLRPIFPQSVDVIYPYDTTPFVKISIEEVVRTLGEAIILVFLVMYLFLQNIRATL 366

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                + + +  T G  A FG   N   +  ++  IG  V+D +VV + +     ++  +
Sbjct: 367 IPTIAVPVVLLGTFGIMAAFGFTINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMHEDN 424

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
           +S RD   KS+ +  G  V  ++      +PMA + GSV      F++ +A
Sbjct: 425 LSPRDATRKSMRQITGALVGIALVLSAVFVPMAFFSGSVGAIYRQFSLTVA 475



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 75/225 (33%), Gaps = 9/225 (4%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G+ +  +  Q  PG S                                   +    
Sbjct: 814  ERYNGQSSRKIAGQPAPGMSTGAAMAEMEAMAAKLPPGFGYEWTGLSYEERLSGSQAPAL 873

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +I+  + +     +   W      I  + L I   +   +  G+  ++     +LT
Sbjct: 874  YALSIIVVFLCLA---ALYESWAIPFAVILVVPLGILGAVIATSARGLSNDVFFQIGLLT 930

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G +  + +++ +  ++   LY   +   +    +  + L   + TSMA  + VLP+A+
Sbjct: 931  TMGLAAKNAILIVEFAKE---LYEGGMDLLEATVHAARQRLRPIIMTSMAFSLGVLPLAI 987

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                G     +    +  G++ A   +IF      + I     K 
Sbjct: 988  ANGAGSGSQNAIGTGVLGGMISATVLAIFFVPLFFILILRAFTKK 1032


>gi|148975337|ref|ZP_01812261.1| protein export protein SecD [Vibrionales bacterium SWAT-3]
 gi|145965261|gb|EDK30511.1| protein export protein SecD [Vibrionales bacterium SWAT-3]
          Length = 597

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 161/509 (31%), Positives = 272/509 (53%), Gaps = 39/509 (7%)

Query: 33  DRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
              P  +       I LGLDLRGG   +LEVD +   +   Q   DE+ S ++       
Sbjct: 112 PAAPKWLTDMGFAPIQLGLDLRGGVQFLLEVDMEPVYHAQAQAVVDEITSQVR-----YA 166

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
             + + +K+  +F      E     +                   L  +++K++++  S+
Sbjct: 167 RGKVVNDKVEFNFRTDADFEKAQKLIREEF------------PQWLRDSSDKKLTLTQSE 214

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
           +    + +  ++Q+++I+R RI+++GI+E++IQR G  RI I+LPG QDP+  + ++G T
Sbjct: 215 DEQRTLRNLTVQQNLQIMRSRIEELGITEASIQRQGESRIRIELPGVQDPAAAKDVIGAT 274

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           A ++F+ V  N          + L+D+DGN+ +V  K  +SG H+  A +          
Sbjct: 275 ASLAFYSVYDN-----PTRNTQTLKDTDGNRVVVARKAVLSGEHIIDARSGIGEMG-SAE 328

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPSGKA 317
           V+I+ D  G ++  E +R NIGKP+A V                        Q+    + 
Sbjct: 329 VNITLDSAGGKKMSEFSRHNIGKPMATVYSEYSRDRAGNSEKTSEVISVANIQSQLGSRF 388

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           +I+G  ++  A  LA +LRAGSL   + I+EER +G  LG++++  G  A+  GL L + 
Sbjct: 389 RITGAGSMAEAQELALLLRAGSLTAPVTIIEERTIGPSLGAENVTNGFAALALGLGLTLT 448

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNE 436
           FM + Y + G VA+ ++ +N++    L++LL  A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 449 FMALWYRRLGWVANGALIVNMVTLFGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFE 508

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           RIR++ ++ +S   S+D GF  A+S+IFD+N T +I  V L+  G G ++GFA+T+GL +
Sbjct: 509 RIRDKMKEGRSFASSIDRGFDSAFSSIFDANFTTMIVAVALYTIGNGPIQGFALTLGLGL 568

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           L SMFT I   RA++  +    +   + I
Sbjct: 569 LTSMFTGIFASRAIINLVWGRDQRHDVRI 597



 Score =  109 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 87/240 (36%), Gaps = 5/240 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    +            +    ++ L       G           +  +   +    TI
Sbjct: 358 SEYSRDRAGNSEKTSEVISVANIQSQLGSRFRITGAGSMAEAQELALLLRAGSLTAPVTI 417

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +GP +  E +  G   + +     L ++ + ++      A   LI+++    G  
Sbjct: 418 IEERTIGPSLGAENVTNGFAALALGLGLTLTFMALWYR-RLGWVANGALIVNMVTLFGLI 476

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           AL  G    L  +A ++  +G +V+  V++++R+R  MK      SF   ID+  +    
Sbjct: 477 ALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKMKE---GRSFASSIDRGFDSAFS 533

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                +    I  + +   G   I  FA+ +  G++ +  + IF +  I+  ++    ++
Sbjct: 534 SIFDANFTTMIVAVALYTIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRDQRH 593


>gi|258653551|ref|YP_003202707.1| protein-export membrane protein SecF [Nakamurella multipartita DSM
           44233]
 gi|258556776|gb|ACV79718.1| protein-export membrane protein SecF [Nakamurella multipartita DSM
           44233]
          Length = 432

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 133/294 (45%), Gaps = 12/294 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
              +  R     +S    + SI L+   G +YGIDF GG  L         +S       
Sbjct: 40  FNILGRRKVYYIVSSALVVASILLIVFRGFHYGIDFAGGTTLTFQPVDSASVSN-----S 94

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +     S    + E    V  Q Q   S      +   K  I +        +   V  
Sbjct: 95  QIAQTVTSATGVETESVQTVGNQIQVTSSSLSVDQVVAAKAAINQAYSPPGGVSDSAVSE 154

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               E+ ++ ++ V++  +A+  ++WIR++   A GA+ +++ D+  T G ++L G E  
Sbjct: 155 TWGSEISQRALLAVLVFLVAVAAFLWIRYEKRMAAGAVVSVLHDLIITAGIYSLVGFEVT 214

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D VVVYD++++N K  T     ++ +  + +IN+TL RS+ TS+
Sbjct: 215 PATVIGLLTILGFSLYDTVVVYDKVQENTKGLTSLNRRTYPEAANLAINQTLMRSINTSL 274

Query: 778 AAFISVLPMA-----VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            A + V  +      + G   +   ++ M  G+++ A SS+F+A P  + +   
Sbjct: 275 IALLPVAGLLVAGVVILGSGTLKDLSLVMLIGMLIGAYSSVFVAVPFAVDLKLR 328


>gi|170740723|ref|YP_001769378.1| protein-export membrane protein SecF [Methylobacterium sp. 4-46]
 gi|168194997|gb|ACA16944.1| protein-export membrane protein SecF [Methylobacterium sp. 4-46]
          Length = 316

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 172/298 (57%), Gaps = 5/298 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN- 586
           +    L PD     FMR R +   +S L S+ ++ L    GLN+GIDFKGG  + +    
Sbjct: 1   MRLLRLWPDESHFDFMRLRRFSFPLSALMSVGTLVLFLIIGLNFGIDFKGGTLIELRPKA 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D++ VR        G+   Q F  +    +R   Q G    QT V++   +      
Sbjct: 61  GQSDVASVRHTANGFGFGETEVQEFGNQGAISIRFPLQAGGETGQTLVMQKAHEAF---D 117

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                   E VGP++S EL++ G +GV++S +A+L+Y+W RF+   ALGAI   + DI  
Sbjct: 118 RDYAFDRVETVGPRVSGELVQSGTIGVVLSVVAVLLYLWFRFERELALGAIVGTLHDIVL 177

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+G F +  IEFN+T++AA+LT++GYS+N+ VVV+DR R+ M+ Y  ++   +L+++SIN
Sbjct: 178 TVGVFVISRIEFNMTSIAAILTIVGYSLNETVVVFDRTRELMRRY-KTMPTEELLNRSIN 236

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            T+ R+V T+ +  +S++ + ++GG  I  F++ M  G+V+   S+IFI++P L++I 
Sbjct: 237 STMSRTVMTATSTALSLVALVLFGGEAIKGFSVVMLIGVVICTYSAIFISSPFLIYIG 294


>gi|301166847|emb|CBW26424.1| protein-export membrane protein [Bacteriovorax marinus SJ]
          Length = 570

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 181/586 (30%), Positives = 284/586 (48%), Gaps = 77/586 (13%)

Query: 1   MRNNPW-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+ + W   I   ++    ++I LP  L       +P    K++I+LGLDL+GG +++L 
Sbjct: 1   MKRSWWYRFIFLIIVTITSVVIILPTALDFQEESNYP---VKSKINLGLDLQGGLYMILG 57

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI--------TLSFADSRFKENI 111
           +D        ++ Y+ ++ S L   GI   S       +        TL  A     E  
Sbjct: 58  IDFKKVYKDEVKGYTRKVESLLADNGI---SSTPGDLNLADEMDPMQTLVLASPADMETA 114

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             K+  F QG             +   T   + + L++    Q+   ++ +S+E+IR RI
Sbjct: 115 KAKIHEFYQGYIR----------ITGDTGANLQLALTKVLKTQIEEQSVSKSIEVIRNRI 164

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP------------ 219
           D+ G++E  I   G+ RI+IQLPG +D  R + L+G TAK++F+ V              
Sbjct: 165 DEFGVTEPEIISQGNDRIIIQLPGVKDIERAKDLIGKTAKLTFNLVNNEVSPVTIQDWIT 224

Query: 220 -----------------------------------NNSKKGFMFGVRFLRDSDGNQYLVE 244
                                                                   YLVE
Sbjct: 225 KAEASGITFKKGDRFSSYLNQLNEYLKNEKLLPAGWILAFEKTVNKLTNELESKIPYLVE 284

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
           +   ++G  L  A    D + ++P V + F   GA+ F  +T +NIG+ LA++LDG V +
Sbjct: 285 ENSALTGEALQDARVQIDQQKNEPYVSLEFKSSGAKLFETITGENIGRQLAIILDGNVYS 344

Query: 305 APVINQAIPSGKAQISG-----NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           AP I   I  G+AQI+      N  ++ A  LA +LRAG+LP++L+ +E+R VG  LG D
Sbjct: 345 APNIQTRIGGGRAQITIGSGGFNKVMKEARDLALVLRAGALPVQLDFLEQRTVGPSLGHD 404

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           SI K   A +   +L+  F++V Y   G +A  ++ LNVI+ +A L  L ATLTLP IAG
Sbjct: 405 SIDKARFASMVACILVFGFILVYYRVSGAIAIVTLALNVIIVIACLVGLEATLTLPGIAG 464

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I L IG+AVD+NI++ ERIREE RK  S + +++ GF  A+ TI D+NIT  +A   L  
Sbjct: 465 IALTIGMAVDANIIIYERIREEVRKGVSNYKAVESGFESAFWTIIDANITTALAGFCLLN 524

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FG G +RGFA+T+ + I  +++TA    + +  F +   + + + I
Sbjct: 525 FGTGPIRGFAVTLLIGIFATVYTAYFAGKLLFEFYMDKVQGEDLSI 570



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 82/217 (37%), Gaps = 4/217 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+       + Q   G     + +     + V +      +  +   +           V
Sbjct: 338 LDGNVYSAPNIQTRIGGGRAQITIGSGGFNKVMKEARDLALVLRAGALPVQLDFLEQRTV 397

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I K     +++ I +  +I + ++   A+ AI TL L++   +         
Sbjct: 398 GPSLGHDSIDKARFASMVACILVFGFILVYYRVSGAI-AIVTLALNVIIVIACLVGLEAT 456

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A +   IG +V+  +++Y+R+R+ ++     +S    ++          +  ++
Sbjct: 457 LTLPGIAGIALTIGMAVDANIIIYERIREEVR---KGVSNYKAVESGFESAFWTIIDANI 513

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
              ++   +  +G   I  FA+ +  GI     ++ F
Sbjct: 514 TTALAGFCLLNFGTGPIRGFAVTLLIGIFATVYTAYF 550


>gi|149187810|ref|ZP_01866106.1| protein translocase subunit SecD [Vibrio shilonii AK1]
 gi|148838206|gb|EDL55147.1| protein translocase subunit SecD [Vibrio shilonii AK1]
          Length = 595

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 161/509 (31%), Positives = 268/509 (52%), Gaps = 39/509 (7%)

Query: 33  DRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
              P  + K+    I+LGLDLRGG   +LEVD +       QM  DE  S  +       
Sbjct: 110 PAAPQWLLKSGFSPIALGLDLRGGVQFLLEVDMEPVYQAHRQMVIDEFSSEFR-----TS 164

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
             R   + + L+             +                 N   +T +  I ++L+ 
Sbjct: 165 RGRITGDSVQLNLFGGTSSAEARAFLRQQF------------PNWHTSTQDNTIRLLLTD 212

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
                + +  ++Q+++I+R+RI ++GI+E+++QR G +RI I+LPG QDP+  + ++G T
Sbjct: 213 EEKSTLRNLTVQQNLQIMRERIAELGITEASVQRQGENRIRIELPGVQDPAAAKDVIGAT 272

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           A ++FH V       G     + L D+DG    +E +  + G H+  A A          
Sbjct: 273 ASLAFHAVTD-----GRGNRTQVLPDNDGTPVNLERRAILGGEHIIDARAGVGDMGT-AE 326

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA------------PVINQAIPSGKA 317
           V+IS D  G R+  + TR NIG P+A V       A                Q+    + 
Sbjct: 327 VNISLDTSGGRKMSQFTRSNIGNPMATVYSEYSRNAVGDSEQLSKVISVATIQSQLGSRF 386

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           +I+G  T++ A  LA +LRAGSL   + I+EER +G  LG++++  G  A+  GL L + 
Sbjct: 387 RITGVGTMQDAQELALLLRAGSLTAPVTIIEERTIGPSLGAENVKNGFAALALGLGLTLT 446

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNE 436
           F+ + Y + G VA+ ++  N++    L++LL  A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 447 FIALWYRRLGWVANVALLANMMSLFGLIALLPGAVLTLPGIAGMVLTVGMAVDANVLIFE 506

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           RI+++ R+ +++  S++ GFS A+ +IFD+N+T +I  + L+  G G V+GFAIT+GL +
Sbjct: 507 RIKDKMREGRTLAQSIEKGFSSAFRSIFDANLTTMIVAIALYAIGNGPVQGFAITLGLGL 566

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           L SMFT + + RA++  +    + + + I
Sbjct: 567 LTSMFTGVFLSRAIINLVWGRDQRREVRI 595



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             Q      +  +   +    TI     +GP +  E ++ G   + +     L +I + +
Sbjct: 393 TMQDAQELALLLRAGSLTAPVTIIEERTIGPSLGAENVKNGFAALALGLGLTLTFIALWY 452

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L+ ++    G  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 453 R-RLGWVANVALLANMMSLFGLIALLPGAVLTLPGIAGMVLTVGMAVDANVLIFERIKDK 511

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      +    I+K  +         ++   I  + +   G   +  FAI +  G++ 
Sbjct: 512 MRE---GRTLAQSIEKGFSSAFRSIFDANLTTMIVAIALYAIGNGPVQGFAITLGLGLLT 568

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F++  I+  ++    + 
Sbjct: 569 SMFTGVFLSRAIINLVWGRDQRR 591


>gi|167624242|ref|YP_001674536.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
 gi|167354264|gb|ABZ76877.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
          Length = 1030

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 73/645 (11%), Positives = 183/645 (28%), Gaps = 43/645 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISILLIVFGLVA-----FEKLPLREYPNIDPPVV---------SIQTNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F   R  E  A+ V   + G
Sbjct: 55  SAAVVESRITQLVEDRISGVEGIKHISSSSSDGRSNVTLEFDVGRDIEAAANDVRDRVSG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  + +   +      +  I+      +      ++ +    R  ID+  + +   
Sbjct: 115 LLNNLPEEAEPPEVQKANGGDEVIMWLNLVSE--QMTTLQLTDYARRYLIDRFSVIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 NMRLGGGKVYAMRVWIDRQALAARNLTVADIESALRSENVELPAGSVESKERHFTVRLER 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +                           +  +              +           
Sbjct: 233 SFKTS-------------------DDFANLVLAEGEDGYLIKLGDVAKVEIGSEEERITF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +       A  L   +               +      S   
Sbjct: 274 RGNREAMIGLGVSKQSTANTLDVARAANKLVDQINPTLPAGMEIKRSYDSSVFIEASVKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFIAMFLVIVVIYLFLGSVRAMLIPALTVPVSLMATFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVVLENIHRRIEEGDSPLKAAFLGAREVAFAVVATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMI--FIIRYKKMKSIDINPLSRFFLIPD 536
           G      + FA+ M  +++ S   A+++   M         +    +         L   
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSIVALTLSPMMCSKVLKPSGQDSWLVRQIDSGMDSLSRH 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLL---FTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
              I     +   +  S++                     + +G + L V   +      
Sbjct: 514 YRMILLKAMKHPFLVSSLILVALVSSAFLAKQVPQEFAPREDRGSMFLIVNGPQGASFEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + S ++ ++   +        K  L+R     G S   +  + ++
Sbjct: 574 IESYMDEIENRLMPLVESGEIKRLLIRAPRGFGRSANFSNGMAII 618



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 69/188 (36%), Gaps = 12/188 (6%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A  ++++ +   +   + +    ++ +      +E+ +   + + +  + + +++     
Sbjct: 299 AANKLVDQINPTLPAGMEIKRSYDSSVFIEASVKEVYQTLFIAMFLVIVVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T       G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 356 VRAMLIPALTVPVSLMATFIVLYALGYTINLLTLLAMILAIGMVVDDAIVVLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S          E     V T++      +P+    G    +   FA+ M+  ++
Sbjct: 413 RIEEGDSPLKAAFLGAREVAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVI 472

Query: 807 VAASSSIF 814
               SSI 
Sbjct: 473 ---FSSIV 477



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 84/236 (35%), Gaps = 9/236 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            SNL  ++    + Q     +   + ++    D  +    L+ +     E +P   I + +
Sbjct: 783  SNLVHVEEFADASQLNRYNRMRAITIEANLSDDYSLGEALDYLNDLTHEYLPAEAIVSYK 842

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                              I++   + + +  +F+ +   L  + T+ L     L    L 
Sbjct: 843  GQSLDYQDS-GNSMYFVFILALGIVFLVLAAQFESYIHPLVIMLTVPLATLGALIGLWLT 901

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                N+ +   ++ L+G +  + +++ +      +L    + F+  I ++ ++ L   + 
Sbjct: 902  DQSLNIYSQIGIIMLVGLAAKNGILIVEFAN---QLRDKGVEFQQAIIQASSQRLRPILM 958

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            T +      +P+ +    G        + +  GI +A   ++ +  P+   +    
Sbjct: 959  TGITTAAGAVPLVLSEGAGAETRFVIGVVVLSGITLATFFTLLVI-PVAYSLLTKN 1013



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 69/540 (12%), Positives = 152/540 (28%), Gaps = 71/540 (13%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M++   +  L  +       +A           + P                GS  ++  
Sbjct: 522  MKHPFLVSSLILVALVSSAFLA----------KQVPQEFAPREDR-------GSMFLIVN 564

Query: 61   DEDDFVNGFLQMYSDELRSFL-----------------KKEGIGVFSMRQIQNKITLSFA 103
                    +++ Y DE+ + L                 +  G    +       I L   
Sbjct: 565  GPQGASFEYIESYMDEIENRLMPLVESGEIKRLLIRAPRGFG-RSANFSNGMAIIVLE-- 621

Query: 104  DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
            D   + +  + +   ++G  S L    +   ++            Q  +       + + 
Sbjct: 622  DWAVRRSAFEIIGD-IRGRLSDL-AGVRAFPVMRQAFGRGVGKPVQFVLGGPSYEELARW 679

Query: 164  MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL---PN 220
             +II ++  +             +    QL    D  R   L  + + +           
Sbjct: 680  RDIIIEKAKENPNLVGLDH--DYNETKPQLRVVIDKDRASDLGVSISHIGRTLESMLGSR 737

Query: 221  NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                    G  +    +GN+       ++  I++    +         V    F +    
Sbjct: 738  LVTTFMRDGEEYDVIIEGNRDNQNTANDLENIYVRSDRSKELIPLSNLVHVEEFADASQL 797

Query: 281  RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
              +   R                          + +A +S ++++  A      L    L
Sbjct: 798  NRYNRMRA------------------------ITIEANLSDDYSLGEALDYLNDLTHEYL 833

Query: 341  PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
            P +  +  +        S +       +  G+V +VL          LV   ++ L  + 
Sbjct: 834  PAEAIVSYKGQSLDYQDSGNSMYFVFILALGIVFLVLAAQFESYIHPLVIMLTVPLATLG 893

Query: 401  TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
             L  L L   +L + S  GI++ +GLA  + IL+ E   +   K      ++    S+  
Sbjct: 894  ALIGLWLTDQSLNIYSQIGIIMLVGLAAKNGILIVEFANQLRDKGVEFQQAIIQASSQRL 953

Query: 461  STIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
              I  + IT     V L      G        + +   I ++ F  + ++      + + 
Sbjct: 954  RPILMTGITTAAGAVPLVLSEGAGAETRFVIGVVVLSGITLATFFTLLVIPVAYSLLTKN 1013


>gi|311107563|ref|YP_003980416.1| acriflavine resistance protein B [Achromobacter xylosoxidans A8]
 gi|310762252|gb|ADP17701.1| acriflavine resistance protein B [Achromobacter xylosoxidans A8]
          Length = 1077

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/549 (12%), Positives = 153/549 (27%), Gaps = 46/549 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVALFILLAGVLAI-----PNMPISQYPDVAPPA-------------ITITATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG--IGVFSMRQ--IQNKITLSFADSRFKENIADKVTL 117
                  + +  +  +   L      I   S+      + IT +FA     +     V  
Sbjct: 50  PGASANEVAEQVTSIIEDQLNGAKGLIYYESVSDSYGTSTITATFAPGTNPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V ++L    ++  L         ++++  +           +  I R   + +   
Sbjct: 110 RVSNVVAQLPTAVQQQGLQYEQTSTGFLMVAAVSSTDGSLDQTALADYITRNIKNPVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L     + ++++      N    G   G     DS 
Sbjct: 170 PGVGQFQLFAAPR-AMRVWVDPAKLVGFNLSMSQVNQAIAQQNVVISGGSIGAPPNPDSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    ++S +                   +        +        I       
Sbjct: 229 RITATVTANGQLSTVE-------------GFGKIVLRANTDGSQVLLRDVARIEVGADNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G  L                +   T +        L           +          
Sbjct: 276 QFGARLNGKPTAAFAIVLSPNANALATAQGVRQQMEELSKYFPGNITYSIPYDTAPYVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+++ +   ++ L+    + + ++   A++  LG ++ + ++
Sbjct: 336 SIEQVVHTLAEAMVLVFLVMYLFLQNVRYTLIPALVVPVAMLGAFAVMLALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    I    +  +   + 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERIMSTEGLPPKEATKKAMPQISGAIIGITLVLVTVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F  G      R F+I M +SI  S   A++   A+   I     +K +          
Sbjct: 456 LAFMSGSVGVIYRQFSIAMAVSIFFSALLALTFTPALCATI-----LKPVPKGHHEDKKG 510

Query: 534 IPDCIAIQF 542
                  +F
Sbjct: 511 FFGWFNRKF 519



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V              +           +     +++A  + +    +++++  
Sbjct: 258 SQVLLRDVARIEVGADNYQFGARLNGKPTAAFAIVLSPNANALATAQGVRQQMEELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P +   +         +  I + +  +  + + + + +++  +   + L     + + + 
Sbjct: 318 PGNITYSIPYDTAPYVKVSIEQVVHTLAEAMVLVFLVMYLFLQNVRYTLIPALVVPVAML 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G   N+  + A++  IG  V+D +VV + +     + T  +  ++   K++
Sbjct: 378 GAFAVMLALGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERIMSTEGLPPKEATKKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  +  ++      LP+A   GSV      F+I MA  I  +A  ++     +
Sbjct: 436 PQISGAIIGITLVLVTVFLPLAFMSGSVGVIYRQFSIAMAVSIFFSALLALTFTPAL 492



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 61/147 (41%), Gaps = 7/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +  + L +   +   +  G+  ++     ++T+IG +  + +++ +  +   
Sbjct: 891  SWAIPISVMLVVPLGMLGAVALISALGMSNDVYFQVGMVTVIGLAAKNAILIVEFAKD-- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
              Y   +   +   ++        + TS+A  + V+P+A+    G +   +  + +  G+
Sbjct: 949  -QYARGMGLYESAVEAARLRFRPILMTSLAFILGVVPLAMATGAGAASQRAVGLGVLGGM 1007

Query: 806  VVAA-SSSIFIAAPILLFIYDWRAKNA 831
            + A   + IF+    ++ +  ++ +  
Sbjct: 1008 LAATPFAVIFVPTFFVVVLGLFKTRPR 1034


>gi|182680740|ref|YP_001828900.1| preprotein translocase subunit SecD [Xylella fastidiosa M23]
 gi|182630850|gb|ACB91626.1| protein-export membrane protein SecD [Xylella fastidiosa M23]
 gi|307579204|gb|ADN63173.1| preprotein translocase subunit SecD [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 614

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 146/520 (28%), Positives = 250/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  L+VD+   +N  +  + +E+RS L  + I
Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSKRI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           G   + R+  N I ++F D          +               +  L  + +   +  
Sbjct: 163 GFRMVERRPDNTIRVTFDDDAHLNEARMVLFKE------------QVGLSYSVSGNTLIA 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +S+N + Q+ S A+EQ++  +R RI+++G++E  IQR G  RI+++LPG QD +  ++L
Sbjct: 211 RVSENELRQIASGAVEQNLTTLRNRINELGVAEPIIQRQGDDRIVVELPGVQDTAEAKRL 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  ++ +    G                  L+  +V +SG  +  AT 
Sbjct: 271 IGATATLEFRGVVDGDAYEAVRTGNVPPEARVYYIRGTNQPVLLNKRVIVSGDEMVNATV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
             D      V     +  G R                      T   +       +  + 
Sbjct: 331 GVDENGMPAVNVTLSNAAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A   GK   +       A  L+ +LRAGSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALSPTRIAGVFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G++   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 451 RGVTAVVFSFLFTLVFFTIYYRMFGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A STI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ R++   I   +    
Sbjct: 571 GPLKGFALTMIIGIFASMFTAITVSRSLSALIYGTRNNLK 610



 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 93/267 (34%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +           + V+    +    +    E   +              +    ++  
Sbjct: 350 QRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPTRIAGVFGKNFRTT 409

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         +   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 410 GLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTI 469

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F +     L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 470 YYRM-FGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++     +  R  I    ++     +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 529 ELR---HGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIF 585

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I ++  +   IY  R     +
Sbjct: 586 ASMFTAITVSRSLSALIYGTRNNLKSL 612


>gi|241206495|ref|YP_002977591.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860385|gb|ACS58052.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1056

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 75/683 (10%), Positives = 178/683 (26%), Gaps = 42/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  +   IG +        Q  + ++P+ +P               + +    
Sbjct: 9   RPILANVLALVFVLIGAVALF-----QLPVAQYPNVVPPT-------------VQVTTRF 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +     +         +    +T++FA     +     V  
Sbjct: 51  PGASAQTLVDTVALPIEQQVNGVQDMLYMQSTSASDGTYSLTVTFAIGTDPDQAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L    +   + T  +    +             ++  S   +    +++   
Sbjct: 111 RVAIAMSSLPEAVQLQGVTTQKKSTAILGFVSLTSPDSRYDSLFLSNYAVINLQNELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+ L+    T   +       +        G+  +    
Sbjct: 171 PGVGNVTVFGAGQYAMRIWMDPNLLQARGLTPQDVVSVVQQQSQEVAAGQIGIPPVPKGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +     ++           +   ++ +V       G R         +       
Sbjct: 231 VFQYTLNVNGRLN-----------EAADYENIVVKVESGQGGRVTRIRDIGRVELGAQTY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +               + +     +        L     P     V          
Sbjct: 280 RQSFMQNGRPAAGIGIFQLPEANAIAVAQVVNTKMQELSKSFPPGLEYHVPFDTTKFVEA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+ + +   +  LV   ++ + +I   A ++ LG T+ L ++
Sbjct: 340 SIDEVYVTLIEAGILVLIVILVFLQDWRAMLVPATTVPVTIIGAFAAMAALGFTVNLSTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIAT 474
             IVL IG+ VD  I++ E +        S   + +            I    +   I  
Sbjct: 400 FAIVLAIGIVVDDAIVIVEGVARHIEAGMSGRKAAEKAMEELLGPVIGITLVLMAVFIPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   R FA+ +  + LIS   A+++        +R              F  +
Sbjct: 460 AFLPGLTGQLYRQFALVIAATALISAINAVTLKPTQCALWLRPPVPPEKRNIFYRGFNKV 519

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG-----VLANRPV 589
            D     +          S +  I ++ L+              + +      +++ +  
Sbjct: 520 YDRGERSYAGLIGSMTRHSGIMVIAALALIGVAVWGLARLPTAFLPIEDQGYVLISAQLP 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D +        ++      +   G    L        D+ A  +   +    + +     
Sbjct: 580 DGASKERTDAVMEEVGKIAEATPGVDQVLTISGISVLDNNASLQNAGVAYVVLKDWDERG 639

Query: 650 TIQNTEIVGPKISRELIRKGIVG 672
             +  +++          + ++ 
Sbjct: 640 KEKGQDLLSIYQHLNGTLQSVLA 662



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 90/225 (40%), Gaps = 7/225 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +       Q    SF         +   Q    +++A  +V+    +++++  P     
Sbjct: 268 DIGRVELGAQTYRQSFMQNGRPAAGIGIFQLPEANAIAVAQVVNTKMQELSKSFPPGLEY 327

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           +      K     I +  V +I + I +LI I +    W   L   TT+ + I       
Sbjct: 328 HVPFDTTKFVEASIDEVYVTLIEAGILVLIVILVFLQDWRAMLVPATTVPVTIIGAFAAM 387

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A  G   NL+ + A++  IG  V+D +V+ + +    +     +S R   +K++ E LG 
Sbjct: 388 AALGFTVNLSTLFAIVLAIGIVVDDAIVIVEGV---ARHIEAGMSGRKAAEKAMEELLGP 444

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            +  ++      +P A      G +   FA+ +A   +++A +++
Sbjct: 445 VIGITLVLMAVFIPAAFLPGLTGQLYRQFALVIAATALISAINAV 489



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 64/199 (32%), Gaps = 9/199 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +                        +E    G +  I +   +L+Y  +      W  
Sbjct: 841  QSLDVMEQIADQTLPPGTGFEWTALSYQEKAVGGQIYFIFALAMLLVYFVLAGQYESWIL 900

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  +  + L +  T+      G+  NL     ++ LI  +  + +++ +  R+      
Sbjct: 901  PLAVLLAVPLALLGTVAALMAAGVANNLYTQIGLILLIALASKNAILIVEYARERRAE-- 958

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              +   D   ++        + TS A  + VLP+ +    G S   S  I +  G++ + 
Sbjct: 959  -GMEILDAAVEAARLRFRPILMTSFAFILGVLPLVLATGAGASARKSIGISVFSGMIAST 1017

Query: 810  SSSIFIAAPILLFIYDWRA 828
              ++       + +     
Sbjct: 1018 CLAVLFVPSFYVLLQRLEE 1036


>gi|157736657|ref|YP_001489340.1| preprotein translocase subunit SecF [Arcobacter butzleri RM4018]
 gi|157698511|gb|ABV66671.1| protein-export membrane protein SecF [Arcobacter butzleri RM4018]
          Length = 322

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 155/294 (52%), Gaps = 4/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +        FM  ++  +  S +  I S+ L+FT G N+GIDF GG  + V  ++   
Sbjct: 1   MEIFNQKKIYDFMGKKWPFLIFSTILMIISLVLVFTRGFNFGIDFVGGTIVQVKYDQTAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R  L+  +        F   +   +R+    G S   T  +     KI        
Sbjct: 61  IEKIREVLKDTKYASAVVTEFGSTEEVTIRIT---GSSSDLTHDISDEMNKILVPTGNFE 117

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  ++VG K+  EL  KG++ +I++  A+LIYI  RF+W FA+ +I  LI DI  TLG 
Sbjct: 118 IRKIDMVGSKVGAELREKGVISLILALAAILIYIGWRFEWRFAIASILGLIHDIIITLGL 177

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +LF ++ NL  +AA+LTL+GY++ND ++V DR+R+ +   T       +I++S++ TL 
Sbjct: 178 LSLFKVDINLDMIAAILTLVGYTINDTIIVNDRIREQV-QITKEKDLDKIINESVSRTLS 236

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R+V TS++    V  M ++GG +I SF+  +  GI++   SSI+  +  L F  
Sbjct: 237 RTVLTSLSTLFVVTTMLIFGGEIIYSFSFTLFVGIIIGTYSSIYFVSSFLKFFG 290


>gi|149186993|ref|ZP_01865301.1| preprotein translocase subunit [Erythrobacter sp. SD-21]
 gi|148829382|gb|EDL47825.1| preprotein translocase subunit [Erythrobacter sp. SD-21]
          Length = 325

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 93/302 (30%), Positives = 166/302 (54%), Gaps = 6/302 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD   I+F++ R     +S+L    S  L+ T GLNYG+DF GG+++      
Sbjct: 1   MKLLKLVPDDTNIKFLKWRVPFFVVSLLLIAASWALVMTKGLNYGVDFAGGLEVRATFTE 60

Query: 588 P--VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK---KI 642
                +S +R+++E+L  G    Q F  +    +R++     +               ++
Sbjct: 61  RSEAPVSQLRTDIEALGYGSPVVQRFGEDNQVSIRVRLPDDVAANNEAAQNAANAVVAEL 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
               P   +   + V  K+S E     +  ++++ + + +YIWIRF+W F +G +  L  
Sbjct: 121 QGNYPDFRLDGNDNVSGKVSGEFREDAVFALVLAMLGVALYIWIRFEWQFGVGGLFALFH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D++  LG FALF +EF+L  +AA+L +IGYS+ND +VVYDR+R+N+K Y   +   +L+D
Sbjct: 181 DVSLALGMFALFQLEFSLQIIAAILAIIGYSLNDTIVVYDRIRENLKKYRK-MPLPELLD 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            S+NETL R+V TS+   +++LP+  +G + +      +  G+ V   SS+++AAP+L++
Sbjct: 240 LSVNETLARTVMTSLTLLVALLPLLFFGPASLFGLTAAIVLGLFVGTYSSVYMAAPLLVW 299

Query: 823 IY 824
           + 
Sbjct: 300 MG 301


>gi|296103488|ref|YP_003613634.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295057947|gb|ADF62685.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 1044

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 66/630 (10%), Positives = 177/630 (28%), Gaps = 45/630 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   KRPRFAMVIALVITLLGAIA-----LKLIPVEQYPQITPPV-------------VNVSAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   + +  +  L + L           +        + ++FA     +  A  V 
Sbjct: 49  WPGASAADVAEAIATPLETQLNGVDHMLYMESTSSDEGTYSLNITFAAGTDPDLAAIDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    ++L  + ++N +         ++       +     +  S     Q  + +  
Sbjct: 109 NRVSQATAQLPAEAQQNGVQVRKRATNLMMGVSLYSPENTHTPLFVSNYASTQVREALSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q          +     P R+  L  TT  ++      N        G   + + 
Sbjct: 169 LPGVGQVQMFGARDYSMRIWLRPDRMNALNVTTDDVAQALREQNVQGAAGQVGTPPVFNG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     +              +  +    I       +         I      
Sbjct: 229 QQQTLTINGLGRL-------------NQAEEFANIIIRAGEMGQLVRLQDVATIELGSRS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G  L                +              L        +  V+        
Sbjct: 276 YSSGAQLNGHDSAYLGIYPTPSANALRVAGAVRAELERLSTRFPDDLVYEVKFDTTTFVA 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      + A+    V++V+ + +   +  L+   +I ++++ T A+L  LG +    S
Sbjct: 336 ATIKEIGVSLALTMLAVVVVVSLFLQSWRATLIVALAIPVSLVGTFAVLYTLGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  I+L + + VD  I+V E +     + QS   +  +   +    +  + +  L   V 
Sbjct: 396 LFAIILALTMVVDDAIVVVESVETLMAEGQSRTAATALALRQIAGPVIATTLVLLAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINP 527
           +       G   R FA+T+  ++ +S   A+++  A+   ++R +        +  +   
Sbjct: 456 VALLPGIVGELYRQFAVTLSTAVTLSSLVALTLTPALCALLLRPRPAQPAAIFRGFNRGL 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L    ++I  +R     +  +   ++     +         + +G     V    
Sbjct: 516 EATRSLYSRMVSIFTLRPWLALLATAGAAAVVVFSFMSMPKGFLPQEDQGYFFASVQLPE 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              L    + + + +         +     
Sbjct: 576 AASLERTEAVMATARELIAKHPAVEDVIQV 605



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/420 (10%), Positives = 116/420 (27%), Gaps = 19/420 (4%)

Query: 425  GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
               ++     N        K+ S    LD         +       ++        G G 
Sbjct: 608  FNILNGTSASNGGFISIMLKDWSERPPLDDVMGTLQRQLLALPEATIMTFAPPTLPGLGN 667

Query: 485  VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF------------ 532
              GF + +      S      I R +++   ++ ++  +     S               
Sbjct: 668  ASGFDLRIQAQAGQSPAELERITREVLVKANQHPQLSRVFTTWSSNVPQLTLIVDRERAA 727

Query: 533  LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
             +   ++  F   +    G        +  +      N     +   Q+  L  R  +  
Sbjct: 728  RLDVPVSRIFSSLQTAFGGTRAGDFSVNNRVYHVVMQNEMQWRERAGQISELFVRSNNGE 787

Query: 593  VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             VR +        +          F              +         I      +   
Sbjct: 788  RVRLSNLVTITPTVGAPFLQQYNQFPSVSVSGSAAEGVSSSTAMAAMGDILAQSLPAGYD 847

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                      ++   + I  V+ + +   +++  +++ W      + +++  I   L + 
Sbjct: 848  YAWSGMSYQEQQTGNQAIWIVLAAVVMAWLFLVAQYESWTLPASVMLSVLFAIGGALVWL 907

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             + G   ++     ++ LI  +  + +++ +  R         I+  D   +  +     
Sbjct: 908  WIAGYANDVYVQIGLVLLIALAAKNAILIVEFAR---ARRMEGIAIVDAAREGASRRFRA 964

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + T+++  I VLPM +    G          +  G++VA    I     + +     R 
Sbjct: 965  VMMTAVSFIIGVLPMMLATGAGAQSRRIIGTTVFSGMLVATVVGILFIPALFVLFQRLRE 1024



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 89/248 (35%), Gaps = 7/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + V L  V +     +      Q    +  +L        +++     +    ++++
Sbjct: 256 EMGQLVRLQDVATIELGSRSYSSGAQLNGHDSAYLGIYPTPSANALRVAGAVRAELERLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P   +   +          I++  V + ++ +A+++ + +    W   L     + +
Sbjct: 316 TRFPDDLVYEVKFDTTTFVAATIKEIGVSLALTMLAVVVVVSLFLQSWRATLIVALAIPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N  ++ A++  +   V+D +VV + +     L     S      
Sbjct: 376 SLVGTFAVLYTLGYSANTLSLFAIILALTMVVDDAIVVVESV---ETLMAEGQSRTAATA 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++ +  G  + T++      +P+A+     G +   FA+ ++  + +++  ++ +   +
Sbjct: 433 LALRQIAGPVIATTLVLLAVFVPVALLPGIVGELYRQFAVTLSTAVTLSSLVALTLTPAL 492

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 493 CALLLRPR 500


>gi|315636721|ref|ZP_07891951.1| RND superfamily drug:proton (H+) antiporter [Arcobacter butzleri
           JV22]
 gi|315479036|gb|EFU69739.1| RND superfamily drug:proton (H+) antiporter [Arcobacter butzleri
           JV22]
          Length = 1055

 Score =  188 bits (476), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 79/639 (12%), Positives = 190/639 (29%), Gaps = 38/639 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I  +G+L           ++++P   P                       
Sbjct: 10  PIFAWVISLIIMLLGILSI-----KNLAVEQYPDIAPPTIE---------IRATYSGATA 55

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   +    ++    L        +     + I + F      +    +V   +Q + 
Sbjct: 56  KAIENSITQIIEQELRGLDGLLYFSSTSGSSTSTINVVFEKGIDPDIAQVQVNNKVQQIL 115

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +L  D +K  +     +   +++   + +   S   + S  +I    D +   +     
Sbjct: 116 PRLPEDVRKEGVSVVKAQTDYLMILSIHDELGKSSENDISDYMISNLKDGLARVDGVGGV 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                    +    DP +L+      + ++    + N    G   G R   +       V
Sbjct: 176 ELFGA-EYAMRIWLDPKKLKSYNVMPSDINKEVTIQNTQASGGSIGARPHLNGQELNADV 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             + ++  +              +    +                 +            L
Sbjct: 235 VSRTKLENVR-------------EFENIVIKSNNVGSNVLLSDVAKVEIGSQDYSFISKL 281

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                +       +  +   T +      +   +                    S     
Sbjct: 282 NGYQASGIGIKLSSGANAIETAKKVKEYISSFESYLPSGYKISYPYDTTIFVEESIKEVV 341

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T      LV+IV+F+ +   +  ++   ++ + ++ T A+L+ LG ++   ++  +VL 
Sbjct: 342 KTLFEAIFLVVIVMFVFLNSWRATIIPAIAVPVVLLGTFAILNFLGFSINSLTMFAMVLS 401

Query: 424 IGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           IGL VD  I+V E +    ++    +   ++        + I  + + +++   ++FF G
Sbjct: 402 IGLLVDDAIVVVENVERNMKEKNLCAKEATIIAMSEITSALIGVATVLSVVFLPMIFFSG 461

Query: 482 GG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF------L 533
                 + FA+T+  S+L+S+  AI++  A+    ++          P+  F        
Sbjct: 462 STGIIYKQFAVTIISSMLLSVIVAITLSPAICATFLKPHNPSEKQTGPIVWFNNKFDSLT 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               ++I     R      + +  I    L F       +  +    L +    PV  S 
Sbjct: 522 RKYKMSIFNFINRPLKWMTAYIVIIVVTILFFLKLPTGFVPSEDQGDLMIQFTLPVGASA 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            RS      I D   +      N +  +         Q 
Sbjct: 582 TRSENVEKIIRDYFLKEEKNNVNSIFTIVGFTFTGNGQN 620



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 78/199 (39%), Gaps = 8/199 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               +      +   +  +     +S   +T I   +  +E+++     + +  I M ++
Sbjct: 299 AIETAKKVKEYISSFESYLPSGYKISYPYDTTIFVEESIKEVVKTLFEAIFLVVIVMFVF 358

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   +     + + +  T       G   N   + A++  IG  V+D +VV + 
Sbjct: 359 LN---SWRATIIPAIAVPVVLLGTFAILNFLGFSINSLTMFAMVLSIGLLVDDAIVVVEN 415

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           + +NMK    ++  ++    +++E     +  +    +  LPM  + GS       FA+ 
Sbjct: 416 VERNMKE--KNLCAKEATIIAMSEITSALIGVATVLSVVFLPMIFFSGSTGIIYKQFAVT 473

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   ++++   +I ++  I
Sbjct: 474 IISSMLLSVIVAITLSPAI 492



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 73/739 (9%), Positives = 188/739 (25%), Gaps = 67/739 (9%)

Query: 94  IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
             + I +  +        A KV  ++    S L            +    + +  + +I 
Sbjct: 285 QASGIGIKLSSGANAIETAKKVKEYISSFESYLPSG------YKISYPYDTTIFVEESIK 338

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
                      E+++   + I +    +    +      +P    P  L         + 
Sbjct: 339 -----------EVVKTLFEAIFLVVIVMFVFLNSWRATIIPAIAVPVVLLGTFAILNFLG 387

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           F              G   + D+      VE  ++   +    AT     +    ++ ++
Sbjct: 388 FSINSLTMFAMVLSIG-LLVDDAIVVVENVERNMKEKNLCAKEATIIAMSEITSALIGVA 446

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
                          + G          + +  +      +    I   F          
Sbjct: 447 TVLSVVFLPMIFFSGSTGIIYKQFAVTIISSMLLSVIVAITLSPAICATFLKPHNPSEKQ 506

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV------------ 381
                    K + +  +   +     +           ++++ +   +            
Sbjct: 507 TGPIVWFNNKFDSLTRKYKMSIFNFINRPLKWMTAYIVIIVVTILFFLKLPTGFVPSEDQ 566

Query: 382 ------LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
                      G  A  S  +  I+    L      +            G   +  +   
Sbjct: 567 GDLMIQFTLPVGASATRSENVEKIIRDYFLKEEKNNVNSIFTIVGFTFTGNGQNGGLGFI 626

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           E    + R  +      D    RA     DS+    I    ++     ++ G   + G  
Sbjct: 627 ELKNWKERAGKENK--ADEIAQRAMIVFSDSSSEYFIRDAEVYVMNPSSIPGLGNSDGFE 684

Query: 496 ILISMF--TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
             +      +   +      ++   K   I +            I + + + + + +G+S
Sbjct: 685 FQLQAGAKMSREELLKAKDSLLETLKSSEIIVGARVEGTEETPQIKLDYDKKKIYSLGLS 744

Query: 554 ILFSICSICLLFTHGLNYGIDF-------------------KGGIQLGVLANRPVDLSVV 594
                 ++   +                             +      V       +S  
Sbjct: 745 YEDIDNTLSSAWAGTYVNDFIDRSRVKRVYIQADAQYRAKPEDLYLWNVRNKENKMVSFE 804

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                S +  + S   ++G  ++L + Q   G S            K        +    
Sbjct: 805 EFTKISWEPAEKSLTRYNGLASYLFQGQAGYGISSGTAMDEMEKLAKANNKDTNYSWSGL 864

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                        + I    +S I + + +   ++ W   +  +  + L I   +     
Sbjct: 865 SYQEKLSGG----QAIYLYSLSLIVIFLCLAALYESWSIPISVLLAVPLGIIGAVIAVYF 920

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             +  ++    A+LT +G    + +++ + + +N   Y           +  +      +
Sbjct: 921 RELNNDVYFQVALLTTVGLVSKNAILIVEFI-EN--AYKNGKPLVKSAIQGASLRFRPII 977

Query: 774 YTSMAAFISVLPMAVWGGS 792
            TS+A    V+P+A+  G+
Sbjct: 978 MTSLAFIAGVIPLAISTGA 996


>gi|163783516|ref|ZP_02178507.1| fructose-bisphosphate aldolase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881280|gb|EDP74793.1| fructose-bisphosphate aldolase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 293

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 79/291 (27%), Positives = 145/291 (49%), Gaps = 11/291 (3%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                +F++ RF   G+S L  + S+ LL+  GLN G+DF GG  + V   +   +  +R
Sbjct: 1   MDYRFEFLKYRFISYGVSFLLILASLFLLYHKGLNLGLDFTGGKVIEVRFEKSPPIGELR 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++   I     Q        +   + +  +            KK  E      +   E
Sbjct: 61  KAVKEAGIESFLVQETKEGTYIIKVREGENFN----------AVKKAIEKFGKYELIREE 110

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  IS EL  K I+ ++ +   +L+Y+  RF+  + +GA+  L+ D+   +G ++L  
Sbjct: 111 RIGSVISEELREKAILAILTALGGILLYLAFRFQPVWGVGALLALVHDVLIVVGAYSLTY 170

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E NL  V+A+L + GYSV D VV++DR+R+N++    ++  ++++D SIN+TL R++ T
Sbjct: 171 REVNLEVVSALLIVAGYSVADTVVIFDRIRENLR-IRKTLPLQEVMDLSINQTLSRTIMT 229

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           S+  F +   +   GG  + +       G+VV   SS+F+A+  +L +  +
Sbjct: 230 SLTTFATAAVLFFLGGYALSNIMFAFVVGVVVGTFSSVFVASSFVLDMSRF 280


>gi|153208396|ref|ZP_01946734.1| protein-export membrane protein SecD [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161830149|ref|YP_001597015.1| protein-export membrane protein SecD [Coxiella burnetii RSA 331]
 gi|165919349|ref|ZP_02219435.1| protein-export membrane protein SecD [Coxiella burnetii RSA 334]
 gi|212218578|ref|YP_002305365.1| protein translocase subunit [Coxiella burnetii CbuK_Q154]
 gi|120576053|gb|EAX32677.1| protein-export membrane protein SecD [Coxiella burnetii 'MSU Goat
           Q177']
 gi|161762016|gb|ABX77658.1| protein-export membrane protein SecD [Coxiella burnetii RSA 331]
 gi|165916948|gb|EDR35552.1| protein-export membrane protein SecD [Coxiella burnetii RSA 334]
 gi|212012840|gb|ACJ20220.1| protein translocase subunit [Coxiella burnetii CbuK_Q154]
          Length = 622

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 149/531 (28%), Positives = 256/531 (48%), Gaps = 39/531 (7%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N  P++    +  A+    + LGLDLRGG H +L+VD    V          + +
Sbjct: 97  YSVALNLAPRTPR--WLQAIGAKPMRLGLDLRGGIHFLLDVDVGAMVKAQETGDLHTMST 154

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++  I    M   QN + + F D   ++     +                       T
Sbjct: 155 ALREARIRYTEMSSDQNGVMIHFRDQAARDQARTLLEKQFPDYR------------FEAT 202

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +   +S   + Q+  +A++Q   I+R R++++G++E  IQ+ G  +I + LPG QD 
Sbjct: 203 ASSLRGTISITALHQIQQNAVDQITTILRNRVNELGVAEPVIQQQGESQISVDLPGIQDT 262

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHL 254
           +R + ++G  A +    V   +  +           S     +    L++ +V + G  +
Sbjct: 263 ARAKDIIGKVATIRLQLVDVEHDAETASSTGTVPFGSKLYTFEKQPVLLKQQVVLKGTSI 322

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP-------------------LA 295
               ++   +  +P V +         F  +T +N+GKP                   + 
Sbjct: 323 -INASSVIGEDGRPAVRVRVSGSDVPSFNRITGENVGKPLAVVYVETQTTRHLVDGKVVT 381

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +      Q       QI+   T++ A  LA +LR+G+ P+ ++ V+ER VG  
Sbjct: 382 QHRQIERIINIATIQTALGNDFQITNLSTMDYAKNLALLLRSGAYPVPVDFVQERVVGPS 441

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG ++I+ G  +   G +L+++FM   Y  +G++AD ++ LN++  +A+LS+LGATLTLP
Sbjct: 442 LGQENIHMGVLSTEIGALLVIVFMAFYYRLFGVIADIALALNIVFIVAVLSILGATLTLP 501

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVD+N+L+NERIREE R   S   S+  G+ RA++TI D+N+T LI  +
Sbjct: 502 GIAGIVLTVGMAVDANVLINERIREELRNGMSPQASIKAGYDRAFATIVDANVTTLIVMI 561

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +LF  G G V+GFA+T  + +L SM TAI   RA++  +   ++   + I 
Sbjct: 562 ILFALGSGPVQGFAVTTTIGLLSSMVTAIFFTRAVVNLVYGRRRASRLSIG 612



 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 82/179 (45%), Gaps = 4/179 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                 +VGP + +E I  G++   I A+ +++++   ++  F + A   L L+I   + 
Sbjct: 431 DFVQERVVGPSLGQENIHMGVLSTEIGALLVIVFMAFYYRL-FGVIADIALALNIVFIVA 489

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             ++ G    L  +A ++  +G +V+  V++ +R+R+ ++     +S +  I    +   
Sbjct: 490 VLSILGATLTLPGIAGIVLTVGMAVDANVLINERIREELR---NGMSPQASIKAGYDRAF 546

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              V  ++   I ++ +   G   +  FA+    G++ +  ++IF    ++  +Y  R 
Sbjct: 547 ATIVDANVTTLIVMIILFALGSGPVQGFAVTTTIGLLSSMVTAIFFTRAVVNLVYGRRR 605



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 27/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  IL +++  I L+ ALPN   +                              + 
Sbjct: 3   RYPLWRYILLAVLIIISLIYALPNLYGEDPA---------------------------IQ 35

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                +  ++   ++++S L  + I   S+R + N + + F  +  +    D +   +
Sbjct: 36  ISAKNSAPIEAVEEKIKSTLNAQHISYLSVRPVDNTVLVRFPSTEDQLKAQDVIQAVV 93


>gi|294142071|ref|YP_003558049.1| protein-export membrane protein SecD [Shewanella violacea DSS12]
 gi|293328540|dbj|BAJ03271.1| protein-export membrane protein SecD [Shewanella violacea DSS12]
          Length = 604

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 159/526 (30%), Positives = 263/526 (50%), Gaps = 34/526 (6%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  L+A P  L  S+    PS +       I LGLDLRGG   +L+VD D       + 
Sbjct: 95  VLAKLVAKPEHLTLSLAPAAPSWLLSLGVAPIKLGLDLRGGVQFLLDVDLDPVYRLHGES 154

Query: 73  YSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             D ++ F +++ +    +R +  + ITL  A+S         +                
Sbjct: 155 LVDSIKQFSREQKLMGTQVRYKDDDSITLMLANSETSYQYRQFIRSQHPRWQ-------- 206

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
              +    +  +++ L Q+  D +    ++Q+++ +R RI Q+GI+E+ +QR G HRI I
Sbjct: 207 ---VKQEGDGILTVSLKQSEKDLLRDLTVKQNLQTMRGRISQLGITEAIVQRQGEHRIRI 263

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPG QDP+  + ++G TA ++F++V P           + LRD       V  K  + G
Sbjct: 264 ELPGVQDPAAAKSVIGATASLAFYEVKP-----PGSVNAKILRDDSQTPVYVSRKPVLGG 318

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP----- 306
            H+  A A          V+I+ D  G +     +RDNIG P+A         A      
Sbjct: 319 EHIIDARAGIGEMG-GAEVNITLDSAGGKLMSAFSRDNIGYPMATSYSEYSRNAQGEVSQ 377

Query: 307 -------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                     Q+    +  I+G    + A  LA +LRAGS+   + IVEER +G  LG++
Sbjct: 378 QTRVISIATIQSQLGNRFSITGAGDYQEAQQLALLLRAGSMTAPVTIVEERTIGPSLGAE 437

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIA 418
           +I  G  A+  G+ + ++FM   Y + G VA+ ++  N+++   LL+L+  A LTLP IA
Sbjct: 438 NIVNGFAALALGMAMTLVFMGFWYRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIA 497

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+VL +G+AVD+N+L+ ERI++  +  +    ++D GF  A+ TI D+N+T +I  VVL+
Sbjct: 498 GLVLTVGMAVDTNVLIFERIKDNLKLGRDFARAIDRGFDSAFGTILDANLTTMITAVVLY 557

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
             G G ++GFA+T+GL +L SMFT I   R ++ +       + + 
Sbjct: 558 SIGNGPIQGFALTLGLGLLTSMFTGIFASRVLINWAYGRNFNRDVR 603



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 92/249 (36%), Gaps = 5/249 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +        S    N +          +    ++ L       G    Q      +  + 
Sbjct: 356 IGYPMATSYSEYSRNAQGEVSQQTRVISIATIQSQLGNRFSITGAGDYQEAQQLALLLRA 415

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +    TI     +GP +  E I  G   + +     L+++   ++      A   LI 
Sbjct: 416 GSMTAPVTIVEERTIGPSLGAENIVNGFAALALGMAMTLVFMGFWYR-RLGWVANVALIA 474

Query: 703 DITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           ++    G  AL  G    L  +A ++  +G +V+  V++++R++ N+KL      F   I
Sbjct: 475 NMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDNLKL---GRDFARAI 531

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           D+  +   G  +  ++   I+ + +   G   I  FA+ +  G++ +  + IF +  ++ 
Sbjct: 532 DRGFDSAFGTILDANLTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRVLIN 591

Query: 822 FIYDWRAKN 830
           + Y      
Sbjct: 592 WAYGRNFNR 600


>gi|238764826|ref|ZP_04625767.1| Acriflavine resistance protein B [Yersinia kristensenii ATCC 33638]
 gi|238696933|gb|EEP89709.1| Acriflavine resistance protein B [Yersinia kristensenii ATCC 33638]
          Length = 1031

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/677 (10%), Positives = 172/677 (25%), Gaps = 51/677 (7%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
              G L  +     +  + ++P+  P               + +  +        +Q   
Sbjct: 1   MLAGTLAIM-----KLPVAQYPTIAPPA-------------ITISANYPGADATTVQNTV 42

Query: 75  -DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
              +   +        +   S      ++TL+F      +    +V   LQ     L  +
Sbjct: 43  TQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQNKLQLAMPLLPQE 102

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            ++  +         ++++    +       + +  +     D I  +            
Sbjct: 103 VQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNVKDPISRTAGVGDVQLFGSQ 162

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +    DP +L     T   +     + NN       G             +  +  +
Sbjct: 163 -YAMRIWMDPHKLNNYGLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQELNSSIIAQTRL 221

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           +                +    +        +        +                   
Sbjct: 222 TNAE-------------EFSQIMLKVNTDGSQVRLKDVAIVQLGAESYNIIARYNGKPAA 268

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                     +   T        A L+         +           S +    T    
Sbjct: 269 GIGIKLATGANALNTSAAVKAELAKLQPFFPAGLKVVYPYDTTPFVKNSINEVVKTLVEA 328

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++ G+VL IGL VD
Sbjct: 329 IILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSINTLTMFGMVLAIGLLVD 388

Query: 430 SNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAV 485
             I+V E +      +      +      +    +    +      V + FFG   G   
Sbjct: 389 DAIVVVENVERVMQEEGLPPKEATKKSMEQIQGALVGIALVLSAVFVPMAFFGGATGAIY 448

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIP 535
           R F+IT+  ++++S+  A+ +  A+   +           +       +           
Sbjct: 449 RQFSITIVSAMVLSVLVALILTPALCATMLKPIAKGDHGPKTGFFGWFNRMFEKSTHHYT 508

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           D +A        + V    +     +  L         + +G     V           +
Sbjct: 509 DSVANILRSTGRYLVIYLAIVIGMGVLFLRLPSSFLPEEDQGVFLTMVQMPAGATQERTQ 568

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L  +    +  +       F V      G           +K         + +    
Sbjct: 569 KVLNQVTDYYLDKEKDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDERPGEQNKVPAIV 628

Query: 656 IVGPKISRELIRKGIVG 672
                   ++    +  
Sbjct: 629 GRASAAFSQIKDGLVFA 645



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 239 SQVRLKDVAIVQLGAESYNIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFF 298

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 299 PAGLKVVYPYDTTPFVKNSINEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 358

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 359 GTFAILSAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 416

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 417 EQIQGALVGIALVLSAVFVPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 473



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 63/166 (37%), Gaps = 7/166 (4%)

Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
             +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 836 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 895

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +L G+E ++     +LT IG S  + +++ +  +  M          +   +++   L 
Sbjct: 896 ASLRGLENDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLEAVRMRLR 953

Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             + TS+A  + VLP+ +    G     +    +  G++ A   +I
Sbjct: 954 PILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 999


>gi|326382131|ref|ZP_08203823.1| preprotein translocase subunit SecF [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198861|gb|EGD56043.1| preprotein translocase subunit SecF [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 362

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 75/296 (25%), Positives = 136/296 (45%), Gaps = 7/296 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R R     IS +  +  I  +   G  +GIDF+GG Q+ + A   V  S V         
Sbjct: 53  RRRRMWYVISGVMMVICILSIAIRGFTFGIDFEGGTQVSLPARGDVTTSEVSKVFSDTLG 112

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            D       G  N           +V +   L     +  +    S   +   V     +
Sbjct: 113 KDPQSVQQAGSGNSATIQVRTETLTVQEGGQLTHALGEAFKPEVTSADVSVSDVSSTWGK 172

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           E+ RK ++ + +  +   IYI IRF    ++ A+ +LI D+  T G ++L G E     V
Sbjct: 173 EITRKMLIALAVFLVVAFIYIAIRFDKEMSIAAMASLIFDLVVTAGIYSLVGWEMTPATV 232

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
             +LT++G+SV D VVV+D++ +N +  L TT  ++ +  + ++N+TL RS+ T++ + +
Sbjct: 233 IGLLTILGFSVYDTVVVFDKVEENTRSVLATTRRTYAEQTNLAVNQTLMRSINTTVISIL 292

Query: 782 SVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++ + V      G   +   A+    G++V   SS+F+A+P+L+ + +      R
Sbjct: 293 PIIALMVVAVWMLGVGTLKDLALIQLVGVIVGTYSSVFLASPLLVTMKERTTDIKR 348


>gi|118474881|ref|YP_891904.1| preprotein translocase subunit SecF [Campylobacter fetus subsp.
           fetus 82-40]
 gi|118414107|gb|ABK82527.1| protein-export membrane protein SecF [Campylobacter fetus subsp.
           fetus 82-40]
          Length = 323

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 98/294 (33%), Positives = 160/294 (54%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +  +     FM  R+     S +    SI L+ T GLNYGIDF GG  + V       
Sbjct: 1   MQIFDNGRIYDFMGKRWLFFCFSFILFFGSIVLICTKGLNYGIDFSGGTLIQVKYEGKAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +R  L + ++   +     G    +        D  +       V   I E      
Sbjct: 61  LDDIRDKLAANEVLKNANVTEFGSDEEITIRYSGSSD--SLGSDPGAVVTSILEGTGKFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  ++VGPK+  EL +KG++ + +S I +LIYI +RF+W FAL AI + I D+  T+G 
Sbjct: 119 IRRVDVVGPKVGSELRQKGLMAIGVSLILILIYIGVRFEWRFALAAIISEIHDVVITIGA 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +L  I+ NL  +AAVLT++GYS+ND ++++DR+R+ +K  +  I   D+I++S++ TL 
Sbjct: 179 ISLLSIDVNLDTLAAVLTVLGYSLNDTIIIFDRIRERVKE-SKFIKLNDVINESVSLTLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+   ++VL +  +GG +I  F+I M  GI++   SS+FIA+P+L +  
Sbjct: 238 RTIMTSITTLLAVLVLFFFGGDMINGFSIIMLIGIIIGTISSVFIASPMLGWFK 291


>gi|149184081|ref|ZP_01862428.1| preprotein translocase subunits D and F [Bacillus sp. SG-1]
 gi|148848210|gb|EDL62513.1| preprotein translocase subunits D and F [Bacillus sp. SG-1]
          Length = 547

 Score =  187 bits (475), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 145/559 (25%), Positives = 247/559 (44%), Gaps = 25/559 (4%)

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           + +G+SE  IQ     RI +QL G +D +  R++L T A +SF  +       G      
Sbjct: 1   NVLGVSEPNIQIEDGDRIRVQLAGVEDQNEAREILSTQANLSFRDINDEVRLDGSDLVAG 60

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             + +          +E+              +  +P   +               +   
Sbjct: 61  AAQQAFDQGNNPIVSLELEDREKFYELTKELSQQPQPSNRLVIWLDFEEGVDSYQEEITK 120

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                    + L+AP +++ I S + QI+G+FTIE A  LA++L AG+LP++L  V   +
Sbjct: 121 ------ATPKFLSAPEVSKPINSNEVQITGSFTIEEAQNLASLLNAGALPVELEEVYSTS 174

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VGA  G  ++ K   A + G+V++ LFM+V Y   G +A  ++ + + L L +  ++   
Sbjct: 175 VGAKFGEQAMDKTVTAGIIGIVIVFLFMLVFYRFPGFIAMITLSVYIFLILWVFDMMNGV 234

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IA ++LG+G+AVD+NI+  ERI+EE +  +SV  +   G   ++ TI D+N+T +
Sbjct: 235 LTLPGIAALILGVGMAVDANIITYERIKEELKVGKSVRAAFQAGNKSSFMTILDANVTTI 294

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN----- 526
           +A  VLF+FG  +V+GFA  + +SIL S  TA+   R ++   +  +             
Sbjct: 295 LAGSVLFYFGTSSVKGFATMLIVSILTSFLTAVWGSRLLLGLWVNSRAFNKKPSWLGVNP 354

Query: 527 --------PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                         L        F + R     IS +     + +L    LN GIDF  G
Sbjct: 355 KDIKDIAENYDTLDLPTKYDKFDFAKQRKKFFAISGILITAGLIVLAIFRLNLGIDFASG 414

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
            ++ +L+N  +    +   LE                   V    +         +    
Sbjct: 415 TRMEILSNGSLTSDSLTEELEEAGFPSDEIVISGDNDEIGVVRYKEVLTKEEIAELKNYF 474

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            +            N   V P I +EL +  ++ V I++I ++IY+ +RF+ Y A+GAI 
Sbjct: 475 SEAYDAE------PNISTVSPVIGKELAKNAMLAVAIASIGIIIYVTLRFELYMAIGAIA 528

Query: 699 TLILDITKTLGFFALFGIE 717
            L+ D    + FF+L  +E
Sbjct: 529 ALLHDAFFIIAFFSLTRLE 547



 Score =  114 bits (284), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 101/283 (35%), Gaps = 10/283 (3%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL-SVVRSNLESLQIGDISFQ 609
            +S+           T  L+        + + +     VD      +      +      
Sbjct: 73  IVSLELEDREKFYELTKELSQQPQPSNRLVIWLDFEEGVDSYQEEITKATPKFLSAPEVS 132

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                    +   +   ++     +L         +        +  VG K   + + K 
Sbjct: 133 KPINSNEVQITGSFTIEEAQNLASLLNA-----GALPVELEEVYSTSVGAKFGEQAMDKT 187

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           +   II  + + +++ + +++     A+ TL + I   L  F +      L  +AA++  
Sbjct: 188 VTAGIIGIVIVFLFMLVFYRFP-GFIAMITLSVYIFLILWVFDMMNGVLTLPGIAALILG 246

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G +V+  ++ Y+R+++ +K+     S R         +    +  ++   ++   +  +
Sbjct: 247 VGMAVDANIITYERIKEELKV---GKSVRAAFQAGNKSSFMTILDANVTTILAGSVLFYF 303

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G S +  FA  +   I+ +  ++++ +  +L    + RA N +
Sbjct: 304 GTSSVKGFATMLIVSILTSFLTAVWGSRLLLGLWVNSRAFNKK 346


>gi|331658616|ref|ZP_08359560.1| integral transmembrane protein [Escherichia coli TA206]
 gi|331054281|gb|EGI26308.1| integral transmembrane protein [Escherichia coli TA206]
          Length = 499

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 62/521 (11%), Positives = 141/521 (27%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E        L           V          
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  +   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +
Sbjct: 456 MAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATL 496



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 260 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFVPMAFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|94310066|ref|YP_583276.1| hydrophobe/amphiphile efflux-1 HAE1 [Cupriavidus metallidurans
           CH34]
 gi|93353918|gb|ABF08007.1| aminoglycoside/multidrug efflux system [Cupriavidus metallidurans
           CH34]
          Length = 1044

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 79/615 (12%), Positives = 163/615 (26%), Gaps = 46/615 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   +  +L  +    GL+      L    + ++P+  P               ++L  
Sbjct: 6   LRRPAFAWVLAILTMVAGLVA-----LNSIPVAQYPAVAPPT-------------VILYA 47

Query: 61  DEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           D        V   +    ++    +        S       +T+ F      +     V 
Sbjct: 48  DYPGATARTVEDRVTAVLEQQMHGIPGLLYIDSSSEAGTATVTIGFRQGTDPQLAQVNVR 107

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  +          +                +       +  +  
Sbjct: 108 NRVSQAEPLLPEVVRRGGVYVDQASASPFMYVSLISKTGTMSETALADYAAGTVLPMLRR 167

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          L    +P +L     TTA +       N S      G    +  
Sbjct: 168 LPGIGKVEAY-SAEYALRVWFNPDQLNAYGLTTADVEAAIRARNGSVTPGQLGGAPSKPG 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q +V     ++                     +                 +    A 
Sbjct: 227 QSYQAVVRPPAPLA-------------DPEAFGRIVLRSAADGSAVLLRDVARVEMAAAD 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +   T  T                   +         
Sbjct: 274 YRYSSTLNGREAASMGLKLADGANVLATSRTVRDALDEAAKAFPAGVAYDISYDTAHFVQ 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S S    T A    LV ++L++ +   +  L+    + ++++ T+A L   G +L + +
Sbjct: 334 SSISRVLMTLAEATVLVFLILYLFLGNLRATLIPCIVVPVSLLGTVACLYAFGLSLNVIT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +    F +           +    +      V
Sbjct: 394 LFGVVLAIGILVDDAIVVVENVERIMREEGVDAFTAASRSMREVSGALLAVTLVLCAVFV 453

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F G   G   R FA+T+ +SI  S+F A+S+  AM   ++R+    +          
Sbjct: 454 PMAFLGSAVGVIYRHFAMTLAISIAFSLFFALSLAPAMCASLLRHGAQPARGPLAWFEHR 513

Query: 533 LIPDCIAIQFMRAR------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                        R       W      + ++C++ L          +  G + + V   
Sbjct: 514 FTAFTTRYAGWVQRLQQRRLRWLAVYLAMAAVCAVGLWQLPSGFLPEEDTGELVIDVELP 573

Query: 587 RPVDLSVVRSNLESL 601
                +  R  +  L
Sbjct: 574 PGSTQAQTRETIAQL 588



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 86/244 (35%), Gaps = 6/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V     +      S      E   +        + +A +R +     +  +  P     
Sbjct: 263 DVARVEMAAADYRYSSTLNGREAASMGLKLADGANVLATSRTVRDALDEAAKAFPAGVAY 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +         +  I + ++ +  + + + + +++        L     + + +  T+   
Sbjct: 323 DISYDTAHFVQSSISRVLMTLAEATVLVFLILYLFLGNLRATLIPCIVVPVSLLGTVACL 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             FG+  N+  +  V+  IG  V+D +VV + +     +    +       +S+ E  G 
Sbjct: 383 YAFGLSLNVITLFGVVLAIGILVDDAIVVVENV--ERIMREEGVDAFTAASRSMREVSGA 440

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++      +PMA  G   G +   FA+ +A  I  +   ++ +A  +   +    A
Sbjct: 441 LLAVTLVLCAVFVPMAFLGSAVGVIYRHFAMTLAISIAFSLFFALSLAPAMCASLLRHGA 500

Query: 829 KNAR 832
           + AR
Sbjct: 501 QPAR 504



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 85/263 (32%), Gaps = 11/263 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +   +L V   +   +S+          G+ + + ++G  +  +     PG S    
Sbjct: 775  MQPEDLARLHVRNAQGQMVSLGAFATLEWGNGEATLERYNGLISVRINADVAPGTSTGTA 834

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI-YIWIRFKWY 691
                    +                  +       +      +S + + +  + +   W 
Sbjct: 835  MTRLESLVRELGPDYEVRWSGRAFEQQQSG----TQAPWLFALSMLFIFLCLVALYESWT 890

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  +  +   +        L G+  ++     V+ ++G +  + ++V +   + ++  
Sbjct: 891  LPLAVLAIVPAGLVGAASAVWLRGLPNDVYFKVGVIVIMGLAAKNAILVVE-YAEQLR-- 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +       ++  + L   V TS+A  + V+P+A+    G     +    +  G++ A
Sbjct: 948  RNGLERVQAATQAARQRLRPVVMTSLAFILGVVPLAISTGPGAGAQRAVGTGVLGGMLGA 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
                  +   +  +I  W    A
Sbjct: 1008 TILGTLVIPLLYAWIARWSKARA 1030


>gi|116252412|ref|YP_768250.1| RND family multidrug efflux transporter [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115257060|emb|CAK08154.1| putative RND family multidrug efflux transporter [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1050

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 79/571 (13%), Positives = 159/571 (27%), Gaps = 41/571 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+      LP   + ++P   P               L +    
Sbjct: 8   RPILAWVFAIFISLAGLIA-----LPFLPVAQYPKVAPP-------------QLSITTSY 49

Query: 63  DDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                      +    +E  + ++       +        IT +FA     +  +  V  
Sbjct: 50  PGASPQDIYQGVTRQIEEELNGVEHLSYFESTSDTSGAMTITATFAAGTDIDQASVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V  +L    K   +         ++          +  +     + R  I ++   
Sbjct: 110 AIRRVEPRLPQSVKDQGITVEEASSGFLMFISLTSTDGKTDEVALGDYLNRNVIGELRRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP ++  L  T + +S      N        G      S 
Sbjct: 170 EGVGRAQLFASQR-AMRIWIDPDKMVGLNLTASDISAAISAQNAQVAAGQIGAAPNPISQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K +++                +    +                 I +     
Sbjct: 229 DLTATVLVKGQLT-------------DIKEFGDIVLRANADGSNVRLRDVARIEEGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +   T          L           V          
Sbjct: 276 SFSTRLNGQPSAAIAIQLSSTGNAVNTSNLVKAKMEELSRFFPDGVEYSVPYDTSPFVSA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+ + +   ++ ++    + + ++ TLA++   G ++ + ++
Sbjct: 336 SIEKVAHTLAEAVALVFVVMLIFLQSFRYTIIPTLVVPVALLGTLAVMYAAGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +      +    I    +      V 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERLMAVEGLSPKEATKKAMRQITGAILGITLVLSCVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R F++TM +SIL S F A+S+  A+    ++  K           F  
Sbjct: 456 MAFFPGSTGIIYRQFSLTMVVSILFSAFLALSLTPALCATFLKPIKGHHEKKGIAGWFNR 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLL 564
             D +  ++ R        S       + LL
Sbjct: 516 NFDRLTGRYARTVEGLAKRSWRVMAVYVALL 546



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V    E  +    S +        +       G++V  + +++   ++++   
Sbjct: 258 SNVRLRDVARIEEGSESYSFSTRLNGQPSAAIAIQLSSTGNAVNTSNLVKAKMEELSRFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P     +            I K    +  +   + + + I    + + +     + + + 
Sbjct: 318 PDGVEYSVPYDTSPFVSASIEKVAHTLAEAVALVFVVMLIFLQSFRYTIIPTLVVPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            TL      G   N+  + A++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTLAVMYAAGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERLMAVEGLSPKEATKKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  +  ++      +PMA + GS       F++ M   I+ +A  ++ +   +
Sbjct: 436 RQITGAILGITLVLSCVFVPMAFFPGSTGIIYRQFSLTMVVSILFSAFLALSLTPAL 492



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 57/166 (34%), Gaps = 11/166 (6%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                +   EL        +     + +++ +      W   L     L++ +       A
Sbjct: 851  EWTGQSLEELRSGSQAPFLFGLSILFVFLLLSGLYESWSIPLS--VMLVVPLGVIGCVLA 908

Query: 713  LFGIEF--NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +   +   ++     ++ +IG S  + +++ +  +          S  D   +       
Sbjct: 909  VMSRDMSNDIYFKVGLIAIIGLSAKNAILIVEFAKDGFAE---GKSLMDAAIEGARLRFR 965

Query: 771  RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + TS+A  + V+P+A+  G    S    +  G++    S+  +A
Sbjct: 966  PIIMTSLAFTLGVVPLAIATGPSAASQN-AIGTGVLGGMISATVLA 1010


>gi|242239929|ref|YP_002988110.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           dadantii Ech703]
 gi|242131986|gb|ACS86288.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           dadantii Ech703]
          Length = 1052

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 82/646 (12%), Positives = 188/646 (29%), Gaps = 47/646 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           + ++P   P               + ++ + 
Sbjct: 9   RPVFAWVIAIVIMLAGALSI-----ESLPVAQYPDVAPP-------------SVSIKTNY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   L            S      +IT++FA     +    +V  
Sbjct: 51  PGASAETLENSVTQVIEQQLTGLDGLLYFSSTSDSSGDVRITVTFAQGTDPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S+L  + ++  L  T  +   ++++        S A + +  ++    D +   
Sbjct: 111 KVQQATSRLPTEVQQQGLTVTKSQSNFLLIAALYDVTDKSSAADIADYLVSNMQDALSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L       + +S      N        G +    + 
Sbjct: 171 AGVGSVQVFGSQ-YAMRIWLDPAKLASYSLMPSDISSAIEAQNTQVSAGKIGGKPASANQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   E             +       
Sbjct: 230 QLTATVTAQSRL-------------KTPEEFRNIIIKSETSGALVRLEDVARVEIGNEDY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T E      A               + +      
Sbjct: 277 SMTTRLNGHPGAGIAVMLSPGANALSTAERVKAKVAEFEPQMPQGYKVAYPKDSTDFIKI 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + ++ T  +L++ G ++   ++
Sbjct: 337 SVEEVVKTLFEAILLVVLVMFLFLQNLRATLIPAVAVPVVLLGTFGVLAVFGYSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL-DMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    R+ +    +  +       S +    +      + 
Sbjct: 397 FGMVLAIGLLVDDAIVVVENVERLMREERMAPAAATEKSMREIGSALVGVAMVLSAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  S+L+S+  A+++  A+   +++     S      +RF  
Sbjct: 457 MAFFGGSTGVIYRQFSITIVSSMLLSVLVALTLTPALCASLLKPTAHASTGNGFFARFNR 516

Query: 534 IPDCIAIQFMRA------RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
             + +  +++        R W         +  + +LF       +  +    + V    
Sbjct: 517 GYNALQTRYVGRVAQVLTRSWRYLALYGLVVAVMGVLFVRLPGGFLPNEDQGDVMVQFTL 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           P   +  R+      I +            +  +         Q  
Sbjct: 577 PAGATDARTQAVGKTIENYFLTQEKDNVEAIFVISGFNFSGSGQNA 622



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 87/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   ++ +        +  +     ++++    ++    +    +P 
Sbjct: 261 VRLEDVARVEIGNEDYSMTTRLNGHPGAGIAVMLSPGANALSTAERVKAKVAEFEPQMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  + + +  +  + + +++ +++  +     L     + + +  T
Sbjct: 321 GYKVAYPKDSTDFIKISVEEVVKTLFEAILLVVLVMFLFLQNLRATLIPAVAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A+FG   N   +  ++  IG  V+D +VV + +     +    ++     +KS+ E
Sbjct: 381 FGVLAVFGYSINTLTLFGMVLAIGLLVDDAIVVVENV--ERLMREERMAPAAATEKSMRE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
                V  +M      LPMA +GGS       F+I +   ++++   ++ +   +
Sbjct: 439 IGSALVGVAMVLSAVFLPMAFFGGSTGVIYRQFSITIVSSMLLSVLVALTLTPAL 493



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 62/156 (39%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + + +   ++ W      +  + L +   +    L G+E ++    A+LT IG 
Sbjct: 879  AISILVVFLCLAALYESWSVPFSVMMVIPLGVVGAVLAATLRGLENDVYFQVALLTTIGL 938

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            S  + +++ +   +    Y    +  +   +     L   + TS+A    VLP+AV    
Sbjct: 939  SAKNAILIVE-FAE--AAYRRGATLYEAALEGARTRLRPVLMTSLAFIAGVLPLAVATGA 995

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G +   S    +  G + A   +IF+     + +  
Sbjct: 996  GANSRISIGSGIVGGTLTATILAIFLVPLFFVLVRR 1031


>gi|85373547|ref|YP_457609.1| preprotein translocase subunit [Erythrobacter litoralis HTCC2594]
 gi|84786630|gb|ABC62812.1| preprotein translocase subunit [Erythrobacter litoralis HTCC2594]
          Length = 326

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 104/303 (34%), Positives = 171/303 (56%), Gaps = 7/303 (2%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-- 585
           +    L+PD   I+F++ R     +S+L    S  L+FT+GLNYG+DF GG ++      
Sbjct: 1   MKLLKLVPDDTNIKFLKWRVPFYVVSLLLMAASWALVFTNGLNYGVDFAGGQEIRATFVG 60

Query: 586 NRPVDLSVVRSNLESL-QIGDISFQNFDGEKNFLVRL---QYQPGDSVAQTRVLEMVKKK 641
                +  VR  L ++  +GD   Q F       +R+       GD     R+   +   
Sbjct: 61  EETAPVPEVRQTLTAIEGVGDPVVQRFGEPNEISIRVKLPPEAEGDKEFADRLTREITAA 120

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           + +  P   I   + V  K+S E     +  ++ + IA+ IYIW+RF+W F +GA+  L+
Sbjct: 121 LRDDHPQVRIDGVDSVSGKVSGEFRETALYALLAAMIAISIYIWVRFEWQFGVGAMFALV 180

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            D++ TLG FALF +EF+L  +AA+L +IGYS+ND +VVYDR+R+N+K +   +   +L+
Sbjct: 181 HDVSLTLGMFALFQLEFSLQIIAAILAIIGYSLNDTIVVYDRIRENLKKFRK-MPIPELL 239

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           D S+NETL R+V TS+   I++LP+ ++G + +      +  GI V   SS+++AAPIL+
Sbjct: 240 DLSVNETLARTVMTSLTLLIALLPLLLFGPASLFGLVAAITLGIFVGTYSSVYMAAPILI 299

Query: 822 FIY 824
           ++ 
Sbjct: 300 WLG 302


>gi|257093302|ref|YP_003166943.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045826|gb|ACV35014.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 1041

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 74/546 (13%), Positives = 162/546 (29%), Gaps = 40/546 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL +L        + ++P   P               +++  + 
Sbjct: 8   RPIFASVISIVIVIAGLLASLV-----LPIAQYPQIAPPT-------------VLITANY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   L   EG+  F+     N    IT +F      +  +  V  
Sbjct: 50  PGASAETLARTVAAPIEEQLNGVEGLAYFTSSAAANGTMTITATFEVGSNVDVASVNVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++    +L  + ++N ++        + +      +     +  S       +D++   
Sbjct: 110 RVKAAEPRLPEEVRRNGVIVQKRSNDILQVVALESAKGRYSTLFLSNYASLNIVDELKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P R+ QL  T + ++      N        G     D  
Sbjct: 170 KGVGDVSIFGAQDYSMRVWLKPDRMAQLGLTASDVAAAIKAQNAQNAAGKIGQEPAPDDQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  K  +                 +    +                 I       
Sbjct: 230 MLVYTVTAKGRL-------------LTPEEFGNIVIRASGPGGVLRLQDVARIELGAYSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +     E        L+         I+          
Sbjct: 277 DQSVQLDGQPTIAMGVFLQTGANALEVAELVRARLDALQKKFPEGMGYIIPFDTTLFVSA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LVL V+++ +   +  L+   ++ +++I T A L L G ++   ++
Sbjct: 337 SISEVIKTLIEAMLLVLAVVYIFLQSWRATLIPMVAVPISLIGTFAGLWLFGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR----AYSTIFDSNITALIA 473
             +VL IG+ VD  I+V E +     + +    +  +   +    A   I        I 
Sbjct: 397 FAMVLAIGIVVDDAIVVLENVERLMAEEKLAPRAAAIKAMQEVQGALVAIVLVLCAVFIP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   + FA+T+ +++++S   A+++  A+   +++ +  +     P +R F 
Sbjct: 457 VAFLGGIAGQLYKQFAVTVAVAVVLSGVVALTLTPALCALLLKPQHSEHQVFKPFNRLFE 516

Query: 534 IPDCIA 539
                 
Sbjct: 517 RFTRSY 522



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/163 (19%), Positives = 65/163 (39%), Gaps = 5/163 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 L+ ++KK  E +      +T +       E+I+  I  +++    + I++    
Sbjct: 305 ELVRARLDALQKKFPEGMGYIIPFDTTLFVSASISEVIKTLIEAMLLVLAVVYIFLQ--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T     LFG   N   + A++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPMVAVPISLIGTFAGLWLFGFSINTLTLFAMVLAIGIVVDDAIVVLENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +    ++ R    K++ E  G  V   +      +P+A  GG
Sbjct: 420 LMAEEKLAPRAAAIKAMQEVQGALVAIVLVLCAVFIPVAFLGG 462



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 64/167 (38%), Gaps = 10/167 (5%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
              +     + + + + +  +++ W   L  I  +   +   L    L G+  ++     +
Sbjct: 865  SSLQAFAFAIVMVFLILAAQYEKWSLPLAVIMAVPFALLGALTAIWLRGMPNDIYFQIGL 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG +  + +++ +      + +   ++  D    +    L   + TS+A  + VLP+
Sbjct: 925  VVLIGLASKNAILIVEFA---ARKHAEGMAIVDAALAAARLRLRPIIMTSLAFVLGVLPL 981

Query: 787  A---VWGGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDWRAK 829
                  G +   S    +  G++ A   ++IFI  P+     +    
Sbjct: 982  VKASGAGAAARQSMGTGVFAGMIAATFIATIFI--PLFFTWLERGKP 1026


>gi|317124979|ref|YP_004099091.1| protein translocase subunit secF [Intrasporangium calvum DSM 43043]
 gi|315589067|gb|ADU48364.1| protein translocase subunit secF [Intrasporangium calvum DSM 43043]
          Length = 387

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 72/310 (23%), Positives = 141/310 (45%), Gaps = 12/310 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     +I F++ R    G S +    ++  +  +GLN+GI+F+GG++  VL 
Sbjct: 4   FAQFGNDLYTGRRSIDFVQRRKTWYGFSAVLIAIALAGILLNGLNFGIEFRGGMEFRVLG 63

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                    ++     + G              VR+Q       AQ +            
Sbjct: 64  VTNTQNYEAKAQEAIGEAGIPGTVTATVVGANTVRVQ----TETAQDKTDAARTTLAKTF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
                  ++ ++GP     +  + + G+I+  + + + + + F+ W  AL  +T L+ D+
Sbjct: 120 DVGRETVSSTLIGPSWGAAVSEQALRGLIVFLVLVTLVMALYFRTWKMALAGLTALLHDL 179

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFRDLID 762
             T+G ++LFG E   +++   LT++GYS+ D VVV+D++R+N      T  +++    +
Sbjct: 180 LITVGIYSLFGFEITPSSMIGFLTILGYSLYDTVVVFDKVRENTAEAFRTKRMTYNQAAN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            ++N+TL RS+ T++ A + +  +        G   +   ++ +  GI V A SSIFIA 
Sbjct: 240 LAVNQTLVRSINTTVVALLPIAAILFVGFTMLGPGTLLDLSLALFIGIGVGAYSSIFIAT 299

Query: 818 PILLFIYDWR 827
           P+L+ +    
Sbjct: 300 PMLVQLRQKE 309


>gi|227496218|ref|ZP_03926517.1| protein translocase subunit SecF [Actinomyces urogenitalis DSM
           15434]
 gi|226834249|gb|EEH66632.1| protein translocase subunit SecF [Actinomyces urogenitalis DSM
           15434]
          Length = 367

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 75/306 (24%), Positives = 136/306 (44%), Gaps = 13/306 (4%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L     ++ F+  R     ++++    S  L+   GLN GIDFKGG ++ +       
Sbjct: 9   NDLYSGRTSMPFVARRKIWYIVALVAIAISAVLVVKPGLNPGIDFKGGTEVTITGVASPS 68

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  L    +   S     G     VR+Q           +   + K        + 
Sbjct: 69  EGPANDVLNQEGMSASSSVTTMGS--SSVRVQTTELTKEQSDSLAAALAKAY---DVDAG 123

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             +   +GP  S ++  K + G++I  + +   IW  F+ W  A+ A+  L+ DI  T+G
Sbjct: 124 AVSATTIGPTWSSDVTDKALRGLVIFFVLVGALIWAYFRTWKMAVAALLALVHDIIITVG 183

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLIDKSINE 767
            +A  G E     +  VLT++GYS+ D VVV+D++R+N K +   T  ++ +L + ++N+
Sbjct: 184 VYAASGFEVTPATIIGVLTILGYSLYDTVVVFDKIRENTKDFATQTRSTYAELANLAVNQ 243

Query: 768 TLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           T  RS+ TS+   + V  +      + G   +   A+ +  G++    SSIF+A P+L+ 
Sbjct: 244 TFIRSINTSVVGVLPVASLLVVGAFILGAGTLRDIALTLFIGMIAGTMSSIFLATPLLVD 303

Query: 823 IYDWRA 828
           +     
Sbjct: 304 LRRREK 309


>gi|294055911|ref|YP_003549569.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coraliomargarita akajimensis DSM 45221]
 gi|293615244|gb|ADE55399.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coraliomargarita akajimensis DSM 45221]
          Length = 1047

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 71/681 (10%), Positives = 177/681 (25%), Gaps = 49/681 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I  +G++  +        + R+P   P               + +  +
Sbjct: 8   KRPIFAAVISIVITVLGIVAMV-----SMPVSRYPDLAPPT-------------INVSAN 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +    +  +   +   E +   S     +    +T++F      +     V 
Sbjct: 50  YPGADAQTVADTVAASIEKEVNGVENMIYMSSVSGNDGSMNLTVTFEPGTDLDVANVLVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  + K+  +         ++            A   S     +  D++  
Sbjct: 110 NRVSLAEPRLPEEVKRTGVSVKKRSTDQVMFIAITSPDGTYDAAYLSNFANLRIRDELLR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                  +        +    DP ++R       ++       N        G       
Sbjct: 170 VPGVGDAMVYGVGQFSIRLWLDPVQMRARNLAATEVLAAVREQNVQVAAGRVGAAPAPSG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y++  +  +              +  +    I       R         +     V
Sbjct: 230 TAFEYVLSARGRL-------------VEIEEFEQIIVATAEDGRAVRLRDVARVELGSDV 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +            A L           +         
Sbjct: 277 YNFKAQLNGAPAASIAIYQVPGSNVIEVANGVRAELAELSRAFPKDVEFDITYDATWVVT 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++ +++ +   +  L+   +I +++I T ++L L+G ++ + +
Sbjct: 337 ASIREVIITLFATLVLVVLTVYVFLQNFRATLIPTVTIPVSLIGTFSVLLLMGFSMNILT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  ILV E       +  S   +           +  + +  L   V 
Sbjct: 397 LFGLVLVIGIVVDDAILVVENTFVHLDRGLSGKEAAAACMKEVTGPVIATTLVLLAVFVP 456

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
                   G   + FAIT+ ++ + S   A+++  A+   ++  K            F  
Sbjct: 457 TAMMSGITGTMFKQFAITISIATVFSSINALTLSPALCGVLL--KPSSKEPRGFFKWFNQ 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   +       +  +++     + +++      G    G +         V + +
Sbjct: 515 AVASSNKFYQMLVRVALKGALVGMCVFVGMMYLALKGMGSLPTGFVPQEDEGYCMVSVQL 574

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                       I            V                               +  
Sbjct: 575 PDGATLERTADVIRRVQEIANSTPGVNDCLGITGFSPIDGTAGA--------NAGFCVLV 626

Query: 654 TEIVGPKISRELIRKGIVGVI 674
            E    +    L ++GI+  +
Sbjct: 627 FEQWDQRQEPHLKQEGILAAL 647



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L    T+ + +  T     L G   N+  +  ++ +IG  V+D ++V +       
Sbjct: 364 FRATLIPTVTIPVSLIGTFSVLLLMGFSMNILTLFGLVLVIGIVVDDAILVVEN---TFV 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                +S ++     + E  G  + T++      +P A+     G++   FAI ++   V
Sbjct: 421 HLDRGLSGKEAAAACMKEVTGPVIATTLVLLAVFVPTAMMSGITGTMFKQFAITISIATV 480

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
            ++ +++ ++  +   +    +K  R
Sbjct: 481 FSSINALTLSPALCGVLLKPSSKEPR 506


>gi|188534606|ref|YP_001908403.1| Acriflavine resistance protein B [Erwinia tasmaniensis Et1/99]
 gi|188029648|emb|CAO97527.1| Acriflavine resistance protein B [Erwinia tasmaniensis Et1/99]
          Length = 1048

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 67/688 (9%), Positives = 175/688 (25%), Gaps = 51/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  ++++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGALSIL-----KLPIEQYPNVAPPA-------------IEITAAY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADAKTLQDSVTQVIEQNMNGIDGLMYMSSSSDSSGALQLTLTFESGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    D       + +  +     D I   
Sbjct: 110 KLQLATPLLPQEVQQQGIKVQKSSSSFLMVAGFINDNDTMTQNDIADYVGSNIKDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +       N        G        
Sbjct: 170 TGVGDTQLFGAQ-YAMRIWMDPHKLNNYQLTPVDVISAINTQNAQVAAGQLGGSPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R       +I       
Sbjct: 229 QLNASIIAQTRLT-------------SPEEFGKILLKVNTDGSRVRLSDVAHIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        + L          +           
Sbjct: 276 EIIARFNGKPASGLGIKLATGANALDTASAVKAELSKLEPFFPSGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+++  G ++   ++
Sbjct: 336 SINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAIINTFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMDQIQGALVGIALVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +                   
Sbjct: 456 MAFFGGSTGVIYRQFSITIVSAMVLSVIVALVLTPALCATMLKPIAKGEHGKTTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D +         + +   ++    +   L         + +G      
Sbjct: 516 NRMFDKSTHHYTDSVGHIVRSTGRYLLIYLLIVVGMAFLFLRLPSSFLPEEDQGVFLTMA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L+ +    ++ +  +    F V      G           +K    
Sbjct: 576 QLPAGATQERTEKVLDQVTDYYLNNEKANVNSVFTVNGFGFAGRGQNTGIAFISLKPWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIV 671
                + +             +    ++
Sbjct: 636 RPGAENKVPAIAGRAMTALSAIKDAMVI 663



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       +  +I  +      + L        +++     ++    K+    
Sbjct: 258 SRVRLSDVAHIELGGENYEIIARFNGKPASGLGIKLATGANALDTASAVKAELSKLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T      FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAIINTFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 436 DQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALVLTPAL 492



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 7/193 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
            G   A     E +         L T    +  G      L       +  IS I + + +
Sbjct: 828  GQPAAGKSSGEAMNLMQELAGKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 887

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +   L F  L G+  ++  V  +LT IG S  + +++ + 
Sbjct: 888  AALYESWSIPFSVMLVVPLGVIGALIFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEF 947

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  M          +   +++   L   + TS+A  + VLP+A+    G     +    
Sbjct: 948  AKDLMDKEGKG--LIEATLEAVRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTG 1005

Query: 801  MAFGIVVAASSSI 813
            +  G+V A   +I
Sbjct: 1006 VMGGMVTATVLAI 1018


>gi|13472859|ref|NP_104426.1| RND multidrug efflux transporter MexF [Mesorhizobium loti
           MAFF303099]
 gi|14023606|dbj|BAB50212.1| RND multidrug efflux transporter; MexF [Mesorhizobium loti
           MAFF303099]
          Length = 1067

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 77/590 (13%), Positives = 165/590 (27%), Gaps = 41/590 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G +        Q  + ++P   P               +V+    
Sbjct: 10  RPIFASVVSIVLLILGGIA-----YTQLPVAQYPEIAPPT-------------IVVRAQY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +       +   +   EG+   S     +    +T++F      +     V  
Sbjct: 52  PGADAETVAATVATPIEQEINGVEGMLYMSSYSSGDGAMALTITFKLGTDLDKAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + TT      +++            +  S     +  D +   
Sbjct: 112 RVSVAEPRLPEEVRRLGITTTKSSPDLMMVVHMLSPDNTYDQLYVSNYARSRVRDILLRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     +        L    DP +L  L  T+  +       N    G   G        
Sbjct: 172 DGVGDLIIFGEREYSLRIWLDPEKLSALGMTSGDVVQALRDQNVQVSGGSIGAPPTNTGT 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY V  +                         I       R         I       
Sbjct: 232 AFQYTVTTQGR-------------FNDARDFRYVIVKSTDDGRLISLQDVARIELGAKDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +              L           +          
Sbjct: 279 VTNSYLNGKPAVALAIFQRPGTNALAAAAEIQDKMKELSRDFPKGLSYDIVYNPTEFVAE 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+ + +   +  +V   +I +++I TLA+L   G +L + ++
Sbjct: 339 SIQEVYKTILEAMLLVIIVIIVFLQSWRMAIVPIVAIPVSLIGTLAVLYAAGFSLNMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +        +   +  +  +   + I   ++  +   V  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIASGLAPNPASHLTMNEVGTAIIAISLVLIAVFVPT 458

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKK--MKSIDINPLSRFF 532
            F  G + +    FAIT+ +S  IS F ++++  A+   + +                  
Sbjct: 459 AFVPGISGQFYLQFAITIAVSTAISAFNSLTLSPALAALLFKPHHAAAAPPRFFLARFGR 518

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            + D     F R   W   I  +     I +     +   + +     + 
Sbjct: 519 ALADGFNRGFDRVAHWYSSIIRVLVGSRIAIAAMLAVFAALIYATVYMVQ 568



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 65/169 (38%), Gaps = 7/169 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               +    +S + + + +  +++ W      +  + L +   L   +  G++ N+     
Sbjct: 882  NAAVYIFGLSVLFVFLALAAQYESWVLPFAIVLVVPLGVLAALLGVSFRGLDNNILVQIG 941

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG +  + +++ +  R   +     +S  +   ++    L   + T+ +  + V+P
Sbjct: 942  LIVLIGLAAKNAILIVEFAR---QAQERGLSAAEAAVEACRLRLRPILMTAFSFILGVVP 998

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +    G  +  S    +  G++      +F+     + +    ++  
Sbjct: 999  LMIATGPGAEMRQSLGTAVFSGMLGVTFVGLFLTPVFYVALRSLFSRRK 1047



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 81/200 (40%), Gaps = 9/200 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 ++ + +   + +    + N      +  +E+ +  +  +++  I +++++    
Sbjct: 307 AEIQDKMKELSRDFPKGLSYDIVYNPTEFVAESIQEVYKTILEAMLLVIIVIIVFLQ--- 363

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  A+  I  + + +  TL      G   N+  +  ++  IG  V+D +VV + + +N+
Sbjct: 364 SWRMAIVPIVAIPVSLIGTLAVLYAAGFSLNMLTLFGLVLAIGIVVDDAIVVVENVERNI 423

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
               + ++       ++NE     +  S+      +P A   G        FAI +A   
Sbjct: 424 A---SGLAPNPASHLTMNEVGTAIIAISLVLIAVFVPTAFVPGISGQFYLQFAITIAVST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A +S+ ++  +   ++ 
Sbjct: 481 AISAFNSLTLSPALAALLFK 500


>gi|332751103|gb|EGJ81506.1| inner membrane domain protein [Shigella flexneri 2747-71]
 gi|332764244|gb|EGJ94481.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Shigella flexneri 2930-71]
          Length = 694

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 148/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +        + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIIMMLAGGLAIM-----NLPVAQYPQIAPPT-------------ITVSATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          ITL+F      +    +V  
Sbjct: 50  PGADAQTVEDSVTQVIEQNMNGLDGLMYMSSTSDAAGNASITLTFETGASPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    D    +  + +  +     D +  +
Sbjct: 110 KLQLAMPSLPEAVQQQGISVDKSSSNILMVAAFISDNGSLNQYDIADYVASNIKDPLSRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +     + +     + NN   G   G        
Sbjct: 170 AGVGSVQLFGS-EYAMRIWLDPQKLNKYNLVPSDVISQIKVQNNQISGGQLGGMPQAADQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +    +        +       
Sbjct: 229 QLNASIIVQTRL-------------QTPEEFGKILLKVQQDGSQVLLRDVARVELGAEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +              A  +   T          L A        +           
Sbjct: 276 STVALYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A+LS +G T+   ++
Sbjct: 336 SIQEVFKTLVEAIILVFLVIYLFLQNFRATIIPTIAVPVVILGTFAILSAVGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDM---GFSRAYSTIFDSNITALIA 473
            G+VL IGL VD  I+V E +     +++     +         RA   I        + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R F+IT+  S+ +S+F A+S+  A+   I
Sbjct: 456 MAFMSGATGEIYRQFSITLISSMRLSVFVAMSLTPALCATI 496



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 71/197 (36%), Gaps = 12/197 (6%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             S A    L  +       +      +T        +E+ +  +  +I+  + + +++ 
Sbjct: 301 DTSRAVKEELNRLSAYFPASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVIYLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   +     + + I  T    +  G   N   +  ++  IG  V+D +VV + + 
Sbjct: 361 ---NFRATIIPTIAVPVVILGTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               +    +  ++   KS+ +     V  ++      +PMA      G +   F+I + 
Sbjct: 417 -ERVIAEDKLPPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL- 474

Query: 803 FGIVVAASSSIFIAAPI 819
              + +   S+F+A  +
Sbjct: 475 ---ISSMRLSVFVAMSL 488


>gi|330829009|ref|YP_004391961.1| putative transporter AmrB [Aeromonas veronii B565]
 gi|328804145|gb|AEB49344.1| Putative transporter AmrB [Aeromonas veronii B565]
          Length = 1044

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 71/572 (12%), Positives = 160/572 (27%), Gaps = 41/572 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G++       P+  + R+PS  P               + L    
Sbjct: 8   RPVFAWVLALFIVLAGVIAI-----PKLPISRYPSVAP-------------VSVTLYATY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L      L       +K       S+    + +IT +F      E     V  
Sbjct: 50  PGATPQTLNDAVVSLIERELSGVKNLLYFESSVDASGSAQITATFKPGTDPELAQIDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V  +L    ++  L   +     +++            +  +  + R  + ++   
Sbjct: 110 RIKAVELRLPQAVRQTGLQVESASSGFLMMVGMTSPDGRFDEVALNDYMARNIVQELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L     T ++++      N        G        
Sbjct: 170 DGVGRVQLFGA-EQAMRIWVDPAKLAAYGLTISEVAQAIEQQNIQIAPGRLGDEPALPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + +++                     +        +        +       
Sbjct: 229 RLTVPLTVQGQLT-------------TPEAFAAIVLRAGGDGAKLVLGDVARVELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                        A        +   T +      A L           +   +      
Sbjct: 276 AFSNRENGVAATSAAIQLSPGANAVRTADAVRTRLAQLAPTLPAGMAYSIPFDSAPFVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+      + ++ T A++ L G ++   ++
Sbjct: 336 SIEKVIHTLLEAMVLVFLVMFLFLQNLRYTLIPAIVAPIALLGTFAVMLLAGFSINSLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERLMATRGLSPREATSQAMKEITGAVIGITLVLTAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      + F ++M +SILIS F A+++  A+   ++R       +       F 
Sbjct: 456 MAFGSGSVGVIYQQFTLSMAVSILISAFLALTLTPALCATLLRPVSPDHHEKRGFFGAFN 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLF 565
                      AR   +       + +   L 
Sbjct: 516 RGFERFTAGYGARVTRLVGRSGRMMATFAALC 547



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 79/205 (38%), Gaps = 14/205 (6%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-W 685
            + A    L  +   +   +  S   ++         ++I   +  +++  + M +++  
Sbjct: 302 TADAVRTRLAQLAPTLPAGMAYSIPFDSAPFVKVSIEKVIHTLLEAMVLVFLVMFLFLQN 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +R+    A+ A   L      T     L G   N   +  ++  IG  V+D +VV + + 
Sbjct: 362 LRYTLIPAIVAPIAL----LGTFAVMLLAGFSINSLTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI----GSFAIP 800
               + T  +S R+   +++ E  G  +   +   ++ + +   +G   +      F + 
Sbjct: 417 -ERLMATRGLSPREATSQAMKEITGAVI--GITLVLTAVFLPMAFGSGSVGVIYQQFTLS 473

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           MA  I+++A  ++ +   +   +  
Sbjct: 474 MAVSILISAFLALTLTPALCATLLR 498



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 68/179 (37%), Gaps = 6/179 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +++   +P            +  +   +  ++ ++ + +  L+   +   W   L  
Sbjct: 835  AEMERLAAQLPPGFALAWTGQSLQERQSAEQAPLLMLLSALVVFLVLAALYESWSIPLSM 894

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +  + L +   +    L G+  ++     ++T+IG S  + +++ +  R   +L++   S
Sbjct: 895  MLVVPLGLLGAVAAVMLRGMPNDVFFKVGMITIIGLSAKNAILIVEFAR---QLHSEGRS 951

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSS 812
              D    +    L   + TS+A  + V+P+ +  G       +    +  G++     +
Sbjct: 952  LLDAAVTAARLRLRPILMTSLAFTLGVVPLMLASGASAETQHAIGTGVFGGMISGTLLA 1010


>gi|154148251|ref|YP_001406064.1| preprotein translocase subunit SecD [Campylobacter hominis ATCC
           BAA-381]
 gi|153804260|gb|ABS51267.1| protein-export membrane protein SecD [Campylobacter hominis ATCC
           BAA-381]
          Length = 526

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 169/546 (30%), Positives = 290/546 (53%), Gaps = 35/546 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M    + +I + +     ++ ++P+                ++I+LGLDL+GG H++LEV
Sbjct: 1   MNKITYRLIAFLIAAVFSVIFSMPSIF---------QFEKGHKINLGLDLQGGIHMLLEV 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           + D+ +   ++  +  L    KK+ + +  ++  +N    S       +          +
Sbjct: 52  EVDEAITSKIKSLAASLSYSAKKDDLLLDDIKIEKNYFDFSIL---DPDEAP-----KFE 103

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   +       +++    +   I L +  I+   ++A+EQ++E IR R+DQ G++E T
Sbjct: 104 AILKDMKG-----IVIDKNVQNYHISLDEKEIEATKTYAVEQAVETIRNRLDQFGLAEPT 158

Query: 181 IQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           I + G   IL++LPG +   D  R + L+   A +    +           +  +   +G
Sbjct: 159 IAKQGKEYILVELPGIKTQEDEQRAKDLIAKAAHLQLMALDDVRQDRAQSISMVEAKSYG 218

Query: 230 VRFLRD--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                D  ++  +YL+++   + G  L  A   FD KT++P+++ + +  GA+ F + T 
Sbjct: 219 DVIYPDVKNESVKYLIKEIPVLDGAMLTDAKVAFDQKTNQPIINFTLNSEGAKIFGDFTG 278

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
           +N+GK LA+VLDG+V +AP IN+ I  G  QISG F++E A  +A  LR+G+L   + + 
Sbjct: 279 ENVGKRLAIVLDGKVYSAPRINERIGGGSGQISGGFSVEEAHDVAIALRSGALLAPVKMS 338

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E R+VG  LG DSI +   A++   VLIVLFMI  YG  G+ AD ++ +N++  +A ++L
Sbjct: 339 EIRSVGPSLGQDSIDQSMAALMGASVLIVLFMIFYYGVAGIFADIALVINILFLIACMAL 398

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            GATLTLP +AGIVL +G+AVD+N+++NER+RE  R   ++  S++ G+  A S I DSN
Sbjct: 399 FGATLTLPGMAGIVLTVGMAVDANVIINERVREVLRSGANIKQSIEKGYENAMSAIIDSN 458

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           +T LI ++ L+ +G G V+GFA+TM + I+ SM TAI     M   I+     K      
Sbjct: 459 LTTLITSMALYAYGTGPVKGFAVTMSIGIIASMITAILGTHGMFELIMDKMLKKGSTRLW 518

Query: 528 LSRFFL 533
                 
Sbjct: 519 FGYKVR 524



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 87/181 (48%), Gaps = 4/181 (2%)

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +     VGP + ++ I + +  ++ +++ +++++   +     + A   L+++I   +  
Sbjct: 337 MSEIRSVGPSLGQDSIDQSMAALMGASVLIVLFMIFYYGV-AGIFADIALVINILFLIAC 395

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            ALFG    L  +A ++  +G +V+  V++ +R+R+ ++   +  + +  I+K     + 
Sbjct: 396 MALFGATLTLPGMAGIVLTVGMAVDANVIINERVREVLR---SGANIKQSIEKGYENAMS 452

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             + +++   I+ + +  +G   +  FA+ M+ GI+ +  ++I     +   I D   K 
Sbjct: 453 AIIDSNLTTLITSMALYAYGTGPVKGFAVTMSIGIIASMITAILGTHGMFELIMDKMLKK 512

Query: 831 A 831
            
Sbjct: 513 G 513


>gi|302206302|gb|ADL10644.1| Protein-export membrane protein secF [Corynebacterium
           pseudotuberculosis C231]
 gi|308276544|gb|ADO26443.1| Protein-export membrane protein secF [Corynebacterium
           pseudotuberculosis I19]
          Length = 373

 Score =  187 bits (475), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 132/303 (43%), Gaps = 11/303 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           + F+  R      +    +  +  +   G + GIDF GG ++ + A      SV ++  +
Sbjct: 17  LDFVGRRRTWYWTTAAILLVCLVSIALRGFSLGIDFVGGTKINMPAGNLETASVSKTFED 76

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ----NTE 655
           +  +     Q        ++ +  +           + + +                   
Sbjct: 77  ATGVEPKLVQIVGAGDTRILEINSKRLSEEQIGSARQALFEAYKPADASGKQTPDAIGDS 136

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V       + ++ ++ + +  +A+ IYI +R +   A+ AIT L++D     G +AL G
Sbjct: 137 TVSESWGSTITKRMLISMFVFLVAVFIYIAVRLEREMAVAAITALLIDFVAIAGIYALLG 196

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLIDKSINETLGRSV 773
            E +   +  +LT++ +S+ D V+V+DR+R+N   Y    S ++ +  + ++N+T+ RS+
Sbjct: 197 FEVSPATIIGLLTVLAFSLYDTVIVFDRVRENTAGYLGNRSRTYAEHANLAVNQTVMRSI 256

Query: 774 YTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            T++ + + +L +      + G   +   A+    G++    SS+F+A PIL+ + +   
Sbjct: 257 STTVISALPILALIVIAVWLLGVGTLKDLALVQLIGVIEGTFSSVFLATPILVSLKNRSK 316

Query: 829 KNA 831
           +  
Sbjct: 317 ETK 319


>gi|308050496|ref|YP_003914062.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ferrimonas balearica DSM 9799]
 gi|307632686|gb|ADN76988.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ferrimonas balearica DSM 9799]
          Length = 1038

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 66/543 (12%), Positives = 152/543 (27%), Gaps = 32/543 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GLL       P   +  FP   P          +           
Sbjct: 9   RPKFAFVISIVLSLAGLLAI-----PALPVAEFPDVSPP---------QISVSTSYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++             +  +T++F      +     V   +Q 
Sbjct: 55  ADVVKDTIGQVIESEVNGVEGMIYMESKSSNDGSYSLTVTFEVGTDADMAQVNVQNRVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  +    +    ++++     +     +  +        D +       
Sbjct: 115 AQPRLPAEVTQQGVKVKKKSPNFLMIANLYSPEGTFDGLYLTNYAGLNIKDTLARVSGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    DP+ +  L  T+A +       N        G   +  +   QY
Sbjct: 175 EVQIIGGMDYAMRIWLDPNAMAALAVTSADVIAALREQNIQVAAGRIGAAPVDPNQQFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +S                +    I        R        +           
Sbjct: 235 SLQAQGRLS-------------HPEEFASVIIRSNPDGSRIVVGDVARVELGSQFYDAQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +        L  G        +          S   
Sbjct: 282 KLDNAPSAIIAVYQSPDANALEVAKGIRAEMTRLSQGFSDDMAYDILYDTTEFVEVSIQE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++V+++ +   +  LV   +I +++I T   L + G T+   S+  ++
Sbjct: 342 VVETLFISVGLVVLVVYIFLQDFRSTLVPAIAIPVSLIGTFLFLLIFGMTINTVSLFALI 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      K      +           I  +++  L         
Sbjct: 402 LAIGIVVDDAIVVVENVTRLMEEKGMDPRTATIEAMKEVTGPIVATSLVLLAVFAPTAVM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     F++T+ +S+LIS   A+++  A+   +++  +      +           
Sbjct: 462 PGITGQMYAQFSVTICVSVLISSINALTLSPALCASLLKPPQQHERGFHAAFNRQFDRLT 521

Query: 538 IAI 540
              
Sbjct: 522 SNY 524



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 96/253 (37%), Gaps = 12/253 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + +  V       Q  D   +  +     +   Q    +++   + +     ++++  
Sbjct: 260 SRIVVGDVARVELGSQFYDAQGKLDNAPSAIIAVYQSPDANALEVAKGIRAEMTRLSQGF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
                 +      +     I++ +  + IS   +++ ++I    +   L     + + + 
Sbjct: 320 SDDMAYDILYDTTEFVEVSIQEVVETLFISVGLVVLVVYIFLQDFRSTLVPAIAIPVSLI 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLID 762
            T  F  +FG+  N  ++ A++  IG  V+D +VV     R+ +        +  R    
Sbjct: 380 GTFLFLLIFGMTINTVSLFALILAIGIVVDDAIVVVENVTRLMEE-----KGMDPRTATI 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++ E  G  V TS+       P AV     G +   F++ +   +++++ +++ ++  +
Sbjct: 435 EAMKEVTGPIVATSLVLLAVFAPTAVMPGITGQMYAQFSVTICVSVLISSINALTLSPAL 494

Query: 820 LLFIYDWRAKNAR 832
              +     ++ R
Sbjct: 495 CASLLKPPQQHER 507



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 80/271 (29%), Gaps = 16/271 (5%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                          +       V LS + S   +L    +S  N  G             
Sbjct: 773  MDFRNSEQDISNFYVRTATGEMVPLSTLVSVTPTLGPEVVSRYNLYGSVTINGIPAPGFS 832

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   +  +  + +                 +  +E+    +   I S   +  Y+++
Sbjct: 833  SGEAIAAMQRVADRVLPSGYQY-------EWTGQTYQEIQAGNLAPFIFSLALVFTYLFL 885

Query: 687  ---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
                  W   L  + ++ + +        +   + NL     ++ LIG +  + +++ + 
Sbjct: 886  VAQYESWTIPLAVMLSVPVAVLGAFLNVLIAQADVNLYTQIGLVLLIGMASKNAILIVEF 945

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
             +   +      S  D   ++        + T+ +  + VLP+ +    G +   S    
Sbjct: 946  AK---QQREAGHSIVDAGQEAARMRFRAVLMTAFSFILGVLPLVLASGAGAASRHSLGYA 1002

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  G++ A      +     + +   R +  
Sbjct: 1003 VFGGMIAAGIVGTLLVPVFYVVLQRMRERFK 1033


>gi|254489122|ref|ZP_05102326.1| RND transporter, HAE1 family [Roseobacter sp. GAI101]
 gi|214042130|gb|EEB82769.1| RND transporter, HAE1 family [Roseobacter sp. GAI101]
          Length = 1043

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 69/621 (11%), Positives = 171/621 (27%), Gaps = 37/621 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G+L  L        + ++P   P                V     
Sbjct: 8   RPIFAWVIAIFIMGVGVLSIL-----SLPVAQYPQIAPPTV---------SVSAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D V   +    ++  + L     I   S       +TL+F      +    +V   L  
Sbjct: 54  ADTVANTVTQVIEQQMTGLDGLRYISSSSTSSGSASVTLTFETGTDPDIAQVQVQNKLAQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    ++  +         +++     +     A +    +    ++++   E   
Sbjct: 114 ATALLPETVQRQGVTVQKSSAGFLMVISLISEDGKLDATDLGDYLSTNLVNELSRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T + +       N       FG R   +      
Sbjct: 174 SVRVFGAQ-YAMRIWLDPAKLAAFELTPSDVVAAVSAENAQISAGAFGSRPSVEGQQLSA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      +   E             +           
Sbjct: 233 TITAQSLL-------------RTPEDFRQIVLRAETDGGLVLVNDVARVEIGAESYATVS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +   T          L          +V          S   
Sbjct: 280 RFNRNPSTGMAISLAPGANALDTASAVESRMEELAQFFPEGVTYVVPFDTTPFVTISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  ++++LG ++   ++  +V
Sbjct: 340 VIKTLIEAIILVFLVMYLFLQNFRATLIPTLAVPVVLLGTFGVMAVLGFSINTLTMLAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +     +       +      +     +  + + + +   V FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEQEGLGPVEATRKSMDQITGALVGIAVVLSAVFVPVAFF 459

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFL 533
            G      + FA+T+  ++ +S+  A+++  A+   +       +K             L
Sbjct: 460 PGSTGVIYKQFAVTIISAMTLSVVVALTLTPALCATMLKAKKHEQKRGPFKWFNTGFDKL 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 +     R   +      +I +           G        +     +    + 
Sbjct: 520 RGGYAGLVGGIVRHPFISGIFYLAIIAAMGALFLRTPQGFLPDEDQGILFTLVQTPTGAT 579

Query: 594 VRSNLESLQIGDISFQNFDGE 614
               L+ ++  +  + + +G+
Sbjct: 580 AERTLDVIKQVEDYYLDQEGD 600



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 88/248 (35%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V ++ V       +      +        +        +++     +E   +++ +  P 
Sbjct: 260 VLVNDVARVEIGAESYATVSRFNRNPSTGMAISLAPGANALDTASAVESRMEELAQFFPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I + I  +I + I + + +++  + +   L     + + +  T
Sbjct: 320 GVTYVVPFDTTPFVTISIEEVIKTLIEAIILVFLVMYLFLQNFRATLIPTLAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A+ G   N   + A++  IG  V+D +VV + +     +    +   +   KS+++
Sbjct: 380 FGVMAVLGFSINTLTMLAMVLAIGLLVDDAIVVVENV--ERIMEQEGLGPVEATRKSMDQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +P+A + GS       FA+ +   + ++   ++ +   +   + 
Sbjct: 438 ITGALVGIAVVLSAVFVPVAFFPGSTGVIYKQFAVTIISAMTLSVVVALTLTPALCATML 497

Query: 825 DWRAKNAR 832
             +    +
Sbjct: 498 KAKKHEQK 505



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 10/158 (6%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             +  +   +S  A+ + +   ++ W      +  + + +   L    L G E  +     
Sbjct: 866  NQAPLLYALSLAAIFLSLAALYESWSIPFAVMLAMPIGVLGALTGAYLGGFENGVFFQVG 925

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +LT+IG +  + +++ +  R     +    S  +    +  +     + TSMA  + VLP
Sbjct: 926  LLTVIGLTGKNAILIVEFARD---RHAEGESMVNAALDAARQRFRPIIMTSMAFSLGVLP 982

Query: 786  MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            + +  G+        +  G++        IAA +L  +
Sbjct: 983  LLLSSGAG-SGGRTAIGSGVLSGT-----IAATVLGVL 1014


>gi|22450139|emb|CAD44523.1| protein-export membrane protein SecF [Streptomyces griseus]
          Length = 361

 Score =  187 bits (475), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 144/301 (47%), Gaps = 14/301 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+R R    GISIL +I +I  +   GL  GI+FKGG        +           E
Sbjct: 18  YDFIRNRKIWYGISILITITAIIGVAVGGLRMGIEFKGGAIFTTDTTQISTAQATDVATE 77

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +     I  +  +G     +R+Q    D+     + E +  ++            ++VGP
Sbjct: 78  ASGHMAIVQELGNGG----LRIQITEVDTAKANEIKETLSDELGIPANDINA---DLVGP 130

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++  K   G+ +  + ++IY+ I F+W  A+ A+  LI DIT T+G +AL G E  
Sbjct: 131 SWGEQIANKAWTGLGVFMVLVVIYLAIAFEWRMAVAALIALIHDITITVGVYALVGFEVT 190

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ ++SIN TL RS+ T++
Sbjct: 191 PGTVIGLLTILGYSLYDTVVVFDSLKEGQKDITKQTRFTYSEIANRSINSTLVRSINTTV 250

Query: 778 AAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A + V  +       +G  ++   ++ +  G+   A SSIFIA P++  + +   +   
Sbjct: 251 VALLPVAGLLFIGGGVFGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLKERDPQMKA 310

Query: 833 I 833
           +
Sbjct: 311 L 311


>gi|323698565|ref|ZP_08110477.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio sp. ND132]
 gi|323458497|gb|EGB14362.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio desulfuricans ND132]
          Length = 1050

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 65/545 (11%), Positives = 153/545 (28%), Gaps = 40/545 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           + ++P   P               + +    
Sbjct: 9   RPIFASVVAIIILLVGVLSLF-----ALPIAQYPQISPP-------------SVSVRATY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   +   + +         +    +T++F   R  E     V  
Sbjct: 51  TGADAATVEQSVAAPIEEQVNGAQDMMYMKSISANDGSLSLTVTFQLGRDLELATVDVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + +   +    +    +++     D+     +  +        D +   
Sbjct: 111 RVNLATPQLPQEVRNTGISVLKQSPEFVLIVSLTSDKPEYDTLFLNNYGKINLYDALRRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E          +   +    DP +L     T + +       N        G+       
Sbjct: 171 EGVGDVNMFGDLDYGMRLWLDPDKLAAYNLTVSDVINAVEEQNTQAPAGQIGMPPTPKDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  K  ++                +    I   E             +       
Sbjct: 231 QFQMTLRVKGRLA-------------DPEEFGNIILKAEADGSTVRIRDVARVELGAKNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        +       +              L           +          
Sbjct: 278 FTFARLNGKANASMLIYQLPGSNALDVASQVRATMEDLSRYFPEGVHYSIPYDTTRFVNS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++    + +++I T AL  +LG ++   ++
Sbjct: 338 SIEEVMSTLYEALILVFLVVFIFLQNWRTTIIPMVCVPVSLIGTFALFPMLGFSINTLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E  +   + +  +   +     S     +  S +  +   + 
Sbjct: 398 FGLVLAIGIVVDDAIVVVEATQRNIDEEGMTPKEATKKAMSEVTGPVIASTLVLIAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FA+T+ +S+ IS   A+++  A+   I+R  K     +      F 
Sbjct: 458 VAFMGGITGQLYKQFALTLSVSVAISSVNALTLSPALSALILRPYKPIRGPLGWFFDKFN 517

Query: 534 IPDCI 538
                
Sbjct: 518 ATFDW 522



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 93/237 (39%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +      +        ++  Q    +++     +    + ++   
Sbjct: 260 STVRIRDVARVELGAKNYFTFARLNGKANASMLIYQLPGSNALDVASQVRATMEDLSRYF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +      +     I + +  +  + I + + ++I  + W   +  +  + + + 
Sbjct: 320 PEGVHYSIPYDTTRFVNSSIEEVMSTLYEALILVFLVVFIFLQNWRTTIIPMVCVPVSLI 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T   F + G   N   +  ++  IG  V+D +VV +  ++N+      ++ ++   K++
Sbjct: 380 GTFALFPMLGFSINTLTLFGLVLAIGIVVDDAIVVVEATQRNIDEE--GMTPKEATKKAM 437

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +E  G  + +++      +P+A  G   G +   FA+ ++  + +++ +++ ++  +
Sbjct: 438 SEVTGPVIASTLVLIAVFIPVAFMGGITGQLYKQFALTLSVSVAISSVNALTLSPAL 494



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/429 (10%), Positives = 121/429 (28%), Gaps = 20/429 (4%)

Query: 413  TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
                + G  L  G        V   + ++     +   SL     +A    +      ++
Sbjct: 606  NYVVLGGFNLLTGAYSSYTSAVF-VVLDDWADRTTPDLSLKSIMGKAQKAFWGIQEAVVM 664

Query: 473  ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
                    G  +  G    +      ++    ++ R  M    +  ++ ++         
Sbjct: 665  GFAPPPIPGLSSTGGLQFELQDRSGNTVSDLAAVTRQYMAEASKRPEIANLFTTFSDSVP 724

Query: 533  LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGVLANR---- 587
                 I    ++     +          +   + +  N YG  ++   Q           
Sbjct: 725  QYFVEIDRDKVKKLGVPISDVFKTLQTYLGGYYINDFNKYGRTYRVMAQAESQFRTRLED 784

Query: 588  -----PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                     +     L +L            ++  + R       + A     + +    
Sbjct: 785  LNRFYMRSNTGQMVPLSTLSHAKRITGPEYIQRYNVFRTVEINAATPAGYSSGQTMAAME 844

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT 699
                                +E    G  G+I     +++++ +      W      I  
Sbjct: 845  DVAQKNLPDGYGYDWTAIAYQEKAAGGQTGLIFGLAIVMVFLVLAAQYESWTTPFAVILC 904

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + L I   +    + G++ N+ A   ++ LIG +  + +++ +  +     + + +S  D
Sbjct: 905  VPLGIFGAMSAQWMRGLDNNVYAQVGLVMLIGLAAKNAIMIVEYAKD---KHDSGMSILD 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                + +      + TS A  + V+P+      G +   +    +  G++ A    + + 
Sbjct: 962  AAKAAASLRFRPILMTSFAFILGVIPLVRASGAGSASRHALGTSVFGGMIAATVLGVLVV 1021

Query: 817  APILLFIYD 825
              +   I  
Sbjct: 1022 PSLYTAIQG 1030


>gi|119488971|ref|ZP_01621906.1| RND multidrug efflux transporter [Lyngbya sp. PCC 8106]
 gi|119454927|gb|EAW36070.1| RND multidrug efflux transporter [Lyngbya sp. PCC 8106]
          Length = 1100

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 66/526 (12%), Positives = 146/526 (27%), Gaps = 39/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +    I  IGL+        +  +  FPS  P                     
Sbjct: 8   KRPVFASVCSLFIILIGLIS-----FSRLPVQEFPSIDPPLVT---------IRTTYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + +        S R+  + I + F   R  E     V   +  
Sbjct: 54  NPEVVETEVTEIIEAEVNSVDGIKTLSSSTREGVSTIRVQFNLERDLEAATQDVRNRVSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D    ++   +  +  I+      +      +E S        + +   +   
Sbjct: 114 VVGRLPDDIDPPVVSKESSDDEQIMWIAVYGENFT--TLELSNYADLFIKNALETVDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    D  ++     T   +       N                     
Sbjct: 172 SIIIGGERRYAMRLWLDSQKMAARNITALDVEQALRRQNVEIPSGRIEGEMTEYPVRTLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                    +  +    I  +     +                    
Sbjct: 232 RL-------------------QQPEEYEDLIIKNNADGSQISLRDIGRAEIGAQDDRTIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S  +  +            A L           +          +   
Sbjct: 273 RFRGLPAVSLGVSKLSGSNLLEVASGIKAQMAELAKIFPEGMSYTIAVDYSEFVEIAIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +   LV++V+F+ +   +  L+   +I +++I  LA++ +LG ++   ++  + 
Sbjct: 333 VWHSLLLSIALVVLVIFVFLRNWRATLIPAITIPVSLIGALAVMFVLGFSVNTLTLFALT 392

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L  GL VD  I+V E I    + K      +           +  + +  +   V + F 
Sbjct: 393 LATGLVVDDTIVVLENIVRYIDEKGMKPLPAALEAVGEVVFAVIATTVVLVAVFVPVGFS 452

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           GG   R    FAIT+  S+++S F A+++  A+   I++ K  +  
Sbjct: 453 GGTTGRLFNEFAITLAGSVIVSSFVALTLAPAVSARILKPKSTEKR 498



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 77/189 (40%), Gaps = 6/189 (3%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           ++    ++ +I P        +   +     I +    +++S   +++ I++  + W   
Sbjct: 299 IKAQMAELAKIFPEGMSYTIAVDYSEFVEIAIDEVWHSLLLSIALVVLVIFVFLRNWRAT 358

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    T+ + +   L    + G   N   + A+    G  V+D +VV + + + +     
Sbjct: 359 LIPAITIPVSLIGALAVMFVLGFSVNTLTLFALTLATGLVVDDTIVVLENIVRYIDE--K 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAAS 810
            +       +++ E +   + T++      +P+   GG+       FAI +A  ++V++ 
Sbjct: 417 GMKPLPAALEAVGEVVFAVIATTVVLVAVFVPVGFSGGTTGRLFNEFAITLAGSVIVSSF 476

Query: 811 SSIFIAAPI 819
            ++ +A  +
Sbjct: 477 VALTLAPAV 485



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 62/160 (38%), Gaps = 7/160 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               ++   ++   + + +  +F+ Y   L  +  + L +        +  +E N+ +   
Sbjct: 862  DATLLIFGLAMTFIFLTLAAQFESYVDPLIILLAVPLSLLGAFAALWIAELELNIYSRIG 921

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG +  + +++ +      +L    +S  +   ++        + T+ +    VLP
Sbjct: 922  LIMLIGLATKNSILIVEFAN---QLRLQGLSITEAALEAGEVRFRPILMTAFSTIFGVLP 978

Query: 786  ---MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   G +   S  + +  G++++   S++I     + 
Sbjct: 979  LALATGAGAASRVSIGLCVLGGMLISTILSLYIVPVFYVI 1018


>gi|315635823|ref|ZP_07891085.1| protein-export membrane protein SecF [Arcobacter butzleri JV22]
 gi|315479802|gb|EFU70473.1| protein-export membrane protein SecF [Arcobacter butzleri JV22]
          Length = 322

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 155/294 (52%), Gaps = 4/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +        FM  ++  +  S +  I S+ L+FT G N+GIDF GG  + V  ++   
Sbjct: 1   MEIFNQKKIYDFMGKKWPFLIFSTILMIISLVLVFTRGFNFGIDFVGGTIVQVKYDQTAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +R  L+  +        F   +   +R+    G S   T  +     KI        
Sbjct: 61  IEKIREVLKDTKYASAIVTEFGSTEEVTIRIT---GSSSDLTHDISDEMNKILVPTGSFE 117

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  ++VG K+  EL  KG++ +I++  A+LIYI  RF+W FA+ +I  LI D+  TLG 
Sbjct: 118 IRKIDMVGSKVGAELREKGVMSLILALAAILIYIGWRFEWRFAIASILGLIHDVIITLGL 177

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +LF ++ NL  +AA+LTL+GY++ND ++V DR+R+ +   T       +I++S++ TL 
Sbjct: 178 LSLFKVDINLDMIAAILTLVGYTINDTIIVNDRIREQV-QITKEKDLDKIINESVSRTLS 236

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R+V TS++    V  M ++GG +I SF+  +  GI++   SSI+  +  L F  
Sbjct: 237 RTVLTSLSTLFVVTTMLIFGGEIIYSFSFTLFVGIIIGTYSSIYFVSSFLKFFG 290


>gi|313681645|ref|YP_004059383.1| protein-export membrane protein secd [Sulfuricurvum kujiense DSM
           16994]
 gi|313154505|gb|ADR33183.1| protein-export membrane protein SecD [Sulfuricurvum kujiense DSM
           16994]
          Length = 525

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 176/548 (32%), Positives = 302/548 (55%), Gaps = 37/548 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ N + V+L  +    GL+ +LP+F   S            +I+LGLDL+GG H++L V
Sbjct: 1   MKLN-YRVVLLIIATVFGLIFSLPSFTQSS---------EGKKITLGLDLQGGLHMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             ++ VN  ++  +  ++ F ++  I +  +   + K+     D      + + +     
Sbjct: 51  KTEEAVNSQIKSIASGVKHFAERNDILIEGISVREGKVVFELLDGDDATTMDEHLKTI-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      +  +V  +E + +I ++   ++++   A++Q++E IR R+DQ G++E T
Sbjct: 109 -----------EGTVVHASEGKYAISITPEAVEKLKLQAVDQAIETIRNRLDQFGLAEPT 157

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLPN--------NSKKGFMFG 229
           + + G  +IL++LPG +      R R+L+   AK+    V  +        +  +   +G
Sbjct: 158 VAKQGIDKILVELPGIKTAEEEQRARELISRAAKLELMAVDEDRSMRVNDLSEAEAASYG 217

Query: 230 VRFLRD--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
            R L D      ++LV +   + G  L         + ++PV++ S +  GA+ F + T 
Sbjct: 218 DRILEDALQPQMKHLVNEIPILDGTMLTD-AQVGYDQNNRPVINFSLNSAGAQVFGDFTG 276

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            ++GK LA+VLDG+V +APVIN+ I  G  QISGN+T+  A  LA  LR+G+L   + ++
Sbjct: 277 KSVGKRLAIVLDGKVYSAPVINERIGGGSGQISGNYTVAEANDLAIALRSGALLAPIYML 336

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E+R+VG  LG+DSI     A+V+G VL+++FMI+ YG  G++A+ ++ +N+ + LA+++L
Sbjct: 337 EKRSVGPSLGADSIKASLLALVSGFVLVMIFMIMYYGLAGIIANLAVVINIFIILAMMAL 396

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           LGATLTLP +AGIVL IGLAVD+NI++NER+RE+ R    +  +L  G+S+A   I DSN
Sbjct: 397 LGATLTLPGMAGIVLHIGLAVDANIIINERVREQIRLGIGLKRALHEGYSKAMRAILDSN 456

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           IT +IA  +L+ +G GA++GFA+T+ + IL SM TAI     +        +        
Sbjct: 457 ITQIIACTILYVYGTGAIKGFAVTLSMGILASMLTAIVGTYGIFQLFTNRIEKSKNYKMW 516

Query: 528 LSRFFLIP 535
                 + 
Sbjct: 517 FGMTRKVN 524



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 86/182 (47%), Gaps = 4/182 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            +     VGP +  + I+  ++ ++   + ++I++ + +     + A   ++++I   L 
Sbjct: 334 YMLEKRSVGPSLGADSIKASLLALVSGFVLVMIFMIMYYGL-AGIIANLAVVINIFIILA 392

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             AL G    L  +A ++  IG +V+  +++ +R+R+ ++L    I  +  + +  ++ +
Sbjct: 393 MMALLGATLTLPGMAGIVLHIGLAVDANIIINERVREQIRL---GIGLKRALHEGYSKAM 449

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              + +++   I+   + V+G   I  FA+ ++ GI+ +  ++I     I     +   K
Sbjct: 450 RAILDSNITQIIACTILYVYGTGAIKGFAVTLSMGILASMLTAIVGTYGIFQLFTNRIEK 509

Query: 830 NA 831
           + 
Sbjct: 510 SK 511


>gi|323936251|gb|EGB32543.1| hydrophobe/amphiphile efflux-1 family protein RND transporter
           [Escherichia coli E1520]
          Length = 569

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 151/552 (27%), Gaps = 46/552 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +                    +                      +      
Sbjct: 228 QQLNASIIAQTR-------------FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +     +K +         
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-----LKPVSAEHHENKG 509

Query: 533 LIPDCIAIQFMR 544
                    F  
Sbjct: 510 GFFGWFNTTFDH 521



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|124268150|ref|YP_001022154.1| acriflavine resistance protein B [Methylibium petroleiphilum PM1]
 gi|124260925|gb|ABM95919.1| acriflavine resistance protein B [Methylibium petroleiphilum PM1]
          Length = 674

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 80/695 (11%), Positives = 188/695 (27%), Gaps = 55/695 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        ++++PS  P               + +    
Sbjct: 8   RPIFAWVIALVIMLAGGLSIL-----SLPINQYPSIAPP-------------QITVTATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        I   S      +ITL+F      +    +V  
Sbjct: 50  PGASAKTLEDTVTQVIEQRMTGLDGLRYIASNSDAAGTAQITLTFQAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   ++L  + ++  L  T      I++     D       + +  +     D +   
Sbjct: 110 KLQLATAQLPQEVQQQGLTVTKSVRNFIMVVGFVSDDPSMTRTDLADFVAANVQDTVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T A ++      N        G        
Sbjct: 170 TGVGEVTLFGAQ-YAMRIWLDPAKLLNYKLTPADVATAVRAQNAQVSAGQLGGLPAAPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I     G           +       
Sbjct: 229 QINATITAQSRL-------------QTAEQFEQIILRTAAGGATVRLRDVARVELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T +        L+         IV          
Sbjct: 276 TSLSFYNGKPAAGLAIRLAAGANALATADAVKARIDALKPYFPAGFDAIVAYDTTPFIKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+++ +   +  L+   ++ + ++ T  ++++ G ++ + ++
Sbjct: 336 SIEEVVKTLAEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVMAVAGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +      +    +    +      + 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKSMGQITGALVGIAMVLSAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  S+++S+  A+ +  A+   +                 + 
Sbjct: 456 MAFFGGSTGVIYRQFSITIVASMVLSVLVALVLTPALCATLLKPIPQGDHGKTTGFFGAF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  + +   +L    +             + +G +   +
Sbjct: 516 NRMFDRSSKGYQGIVGRMLGRSLRYLLIYGVLLLAVAWLFTRLPTAFLPDEDQGILFTQI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L  ++   +  +    +  F V      G+          +K    
Sbjct: 576 QLPAGATQERTLKVLRQVEHHFLETEKDSVQGLFTVAGFSFGGNGQNVGLGFIRMKDWSE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 T++       K   +        +  +  
Sbjct: 636 RPGADHTVKAVAARAMKAFSQFRD----AMGFAFA 666



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 67/174 (38%), Gaps = 6/174 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             ++     +    P               +  I + +  +  + + + + +++  + + 
Sbjct: 304 DAVKARIDALKPYFPAGFDAIVAYDTTPFIKLSIEEVVKTLAEAIVLVFLVMYLFLQNFR 363

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L     + + +  T G  A+ G   N+  +  ++  IG  V+D +VV + +     + 
Sbjct: 364 ATLIPTIAVPVVLLGTFGVMAVAGFSINVLTMFGLVLAIGLLVDDAIVVVENV--ERVMS 421

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +S ++   KS+ +  G  V  +M      LPMA +GGS       F+I + 
Sbjct: 422 EEGLSPKEATKKSMGQITGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSITIV 475


>gi|154706864|ref|YP_001424600.1| protein translocase subunit [Coxiella burnetii Dugway 5J108-111]
 gi|154356150|gb|ABS77612.1| protein translocase subunit [Coxiella burnetii Dugway 5J108-111]
          Length = 622

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 149/531 (28%), Positives = 256/531 (48%), Gaps = 39/531 (7%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N  P++    +  A+    + LGLDLRGG H +L+VD    V          + +
Sbjct: 97  YSVALNLAPRTPR--WLQAIGAKPMRLGLDLRGGIHFLLDVDVGAMVKAQETGDLHTMST 154

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++  I    M   QN + + F D   ++     +                       T
Sbjct: 155 ALREARIRYTEMSSDQNGVMIHFRDQAARDQARTLLEKQFPDYR------------FEAT 202

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +   +S   + Q+  +A++Q   I+R R++++G++E  IQ+ G  +I + LPG QD 
Sbjct: 203 ASSLRGTISITALHQIQQNAVDQITTILRNRVNELGVAEPVIQQQGESQISVDLPGIQDT 262

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHL 254
           +R + ++G  A +    V   +  +           S     +    L++ +V + G  +
Sbjct: 263 ARAKDIIGKVATIRLQLVDVEHDAETASSTGTVPFGSKLYTFEKQPVLLKQQVVLKGTSI 322

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP-------------------LA 295
               ++   +  +P V +         F  +T +N+GKP                   + 
Sbjct: 323 -INASSVIGEDGRPAVRVRVSGSDVPSFNRITGENVGKPLAVVYVETQTTRHLVDGKVVT 381

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +      Q       QI+   T++ A  LA +LR+G+ P+ ++ V+ER VG  
Sbjct: 382 QHRQIERIINIATIQTALGNDFQITNLSTMDYAKNLALLLRSGAYPVPVDFVQERVVGPS 441

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG ++I+ G  +   G +L+++FM   Y  +G++AD ++ LN++  +A+LS+LGATLTLP
Sbjct: 442 LGQENIHMGVLSTEIGALLVIVFMAFYYRLFGVIADIALALNIVFIVAVLSILGATLTLP 501

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVD+N+L+NERIREE R   S   S+  G+ RA++TI D+N+T LI  +
Sbjct: 502 GIAGIVLTVGMAVDANVLINERIREELRNGMSTQASIKAGYDRAFATIVDANVTTLIVMI 561

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +LF  G G V+GFA+T  + +L SM TAI   RA++  +   ++   + I 
Sbjct: 562 ILFALGSGPVQGFAVTTTIGLLSSMVTAIFFTRAVVNLVYGRRRASRLSIG 612



 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 82/179 (45%), Gaps = 4/179 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                 +VGP + +E I  G++   I A+ +++++   ++  F + A   L L+I   + 
Sbjct: 431 DFVQERVVGPSLGQENIHMGVLSTEIGALLVIVFMAFYYRL-FGVIADIALALNIVFIVA 489

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             ++ G    L  +A ++  +G +V+  V++ +R+R+ ++     +S +  I    +   
Sbjct: 490 VLSILGATLTLPGIAGIVLTVGMAVDANVLINERIREELR---NGMSTQASIKAGYDRAF 546

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              V  ++   I ++ +   G   +  FA+    G++ +  ++IF    ++  +Y  R 
Sbjct: 547 ATIVDANVTTLIVMIILFALGSGPVQGFAVTTTIGLLSSMVTAIFFTRAVVNLVYGRRR 605



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 27/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  IL +++  I L+ ALPN   +                              + 
Sbjct: 3   RYPLWRYILLAVLIIISLIYALPNLYGEDPA---------------------------IQ 35

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                +  ++   ++++S L  + I   S+R + N + + F  +  +    D +   +
Sbjct: 36  ISAKNSAPIEAVEEKIKSTLNAQHISYLSVRPVDNTVLVRFPSTEDQLKAQDVIQAVV 93


>gi|22299161|ref|NP_682408.1| multidrug efflux transporter [Thermosynechococcus elongatus BP-1]
 gi|22295343|dbj|BAC09170.1| multidrug efflux transporter [Thermosynechococcus elongatus BP-1]
          Length = 1044

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 71/583 (12%), Positives = 167/583 (28%), Gaps = 33/583 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +G +      LP   ++ +P+  P                     
Sbjct: 8   KRPVFATVCSLLIILVGAIA-----LPTLPIEYYPNVRPPTIQ---------VSANYAGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++       +      + IT++F +   +   A  V   + 
Sbjct: 54  NAETVETNVTTILETQINGVEGMDYIDSTSNSFGNSNITITFTEGYDENIAAVDVNNLVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGISES 179
            V S+L  +     +  +      ++      ++     A   S       +  +   + 
Sbjct: 114 SVTSQLPPEVINTGVNVSKSTNQIVLALALYPEEGYDYDATFISNYATLYVVQPLQRLKG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +     +    +    DP+RL     T   +       N      + G     +    
Sbjct: 174 VGKVQIFGQRTYAMRIWLDPNRLASRGLTAQDVVGALSDQNVQVGAGIIGAPPAPEGQEF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  ++ +  ++                +    I                           
Sbjct: 234 QISIQAQSRLASEE-------------EFADIIIQRGEDGSVVRIRDVGRTELGAQNYNT 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                            +  +            A+L     P     V      A   S 
Sbjct: 281 NFQFDGRNAVGIGIYQLSSANALDIARAVEAEMAILAEKFPPGLKWSVGFSTTDAVQESI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T  +   LV+ V+F+ +   +  ++   +I +++I T A +   G ++   ++ G
Sbjct: 341 KEVVITLIVAIILVIAVIFLFLQDWRATIIPSVTIPVSLIGTFAFMKAFGFSINSLTMFG 400

Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL  GL VD  I+V E +      +  +   +            I  S +   +   V 
Sbjct: 401 LVLATGLVVDDAIVVVENVTRLIEEEGMTPQEAASRSMEEVTGALIATSLVMMAVFIPVA 460

Query: 478 FFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           FF G      + FA+T+  +I +S F A+++   +   ++R ++    +         + 
Sbjct: 461 FFPGVTGRLYQQFALTIVFAIALSTFNALTLSPPLCALLLRRERPPMANFILFRWINRLI 520

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
           +     +  +    V +        + LL      + I   G 
Sbjct: 521 ERTRRGYAGSLNVIVRLKYWVLAGFVALLGVTYWLFQIVPGGF 563



 Score = 95.5 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 91/257 (35%), Gaps = 9/257 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +       +  +R    +         NF  +    V +      S     +   V+ 
Sbjct: 252 IIIQRGEDGSVVRIRDVGRTELGAQNYNTNFQFDGRNAVGIGIYQLSSANALDIARAVEA 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWYFALGA 696
           ++  +           VG   +  +       VI   +A+++ I + F     W   +  
Sbjct: 312 EMAILAEKFPPGLKWSVGFSTTDAVQESIKEVVITLIVAIILVIAVIFLFLQDWRATIIP 371

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             T+ + +  T  F   FG   N   +  ++   G  V+D +VV + +     +    ++
Sbjct: 372 SVTIPVSLIGTFAFMKAFGFSINSLTMFGLVLATGLVVDDAIVVVENV--TRLIEEEGMT 429

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
            ++   +S+ E  G  + TS+      +P+A + G        FA+ + F I ++  +++
Sbjct: 430 PQEAASRSMEEVTGALIATSLVMMAVFIPVAFFPGVTGRLYQQFALTIVFAIALSTFNAL 489

Query: 814 FIAAPILLFIYDWRAKN 830
            ++ P+   +       
Sbjct: 490 TLSPPLCALLLRRERPP 506



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 74/216 (34%), Gaps = 8/216 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            + L R     G +V      + +    +    +                L   G   +I 
Sbjct: 813  HNLFRSAEVTGQNVPPLSDRQAMMTMASLAEEVLPNGIGYSWTGLSLESLRSAGQAPLIF 872

Query: 676  SAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +++ +      +   L  I ++ L I   L    L G+  ++     ++ LIG 
Sbjct: 873  GLGLVFVFLVLSAQYESYIDPLIIILSVPLAIMGALLAQWLRGLNNDVFCQIGLVMLIGL 932

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +    N    +   +    +  +  E L   + T+++  + + P+ +    
Sbjct: 933  ASKNAILIVE--FANQIRESKGTAIVKSVINAAEERLRPILMTAISFILGIFPLVIATGS 990

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G     S    +  G++ A   S F+   I + I +
Sbjct: 991  GAKSRHSLGTSVTGGMIAATFLSFFVVPIIYILIKE 1026


>gi|227112271|ref|ZP_03825927.1| multidrug efflux system transmembrane protein [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 1032

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 81/676 (11%), Positives = 182/676 (26%), Gaps = 44/676 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++       P+  + R+PS  P +            +       
Sbjct: 8   RPVFAWVIAVFIVLFGMIAI-----PKLPVARYPSVAPPSV---------NIYATYAGST 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + +N  +    +   S +K       S     Q  IT++F      E     V   ++ 
Sbjct: 54  PEMMNNNVVSLIERELSSVKNLLYFESSSDTTGQATITVTFKPGTDPELAQVDVQNRIKI 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    ++N L         +++   +  Q      + S    R  ++++   E   
Sbjct: 114 VEPRLPQVVRQNGLNVEASSSGFLMIIGLSSKQGQMSDSDLSDYFSRNMLEELRRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L Q   T   +S      N        G           Y
Sbjct: 174 RVQLFGA-EKAMRVWIDPIKLNQYRLTVNDISQAITAENAQISPGRTGDSPAVPGQQVTY 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K ++S                +             R        +           
Sbjct: 233 PLLVKGQLS-------------SPEEFGNITLRSNRDGSRVILSDVARLELGPQSYTFST 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                +   A        +   T +   +    L           +          S   
Sbjct: 280 RENGQISTGAAIQLAPGANAVRTADQIKLRLDDLSKAMPSGMQYTIPFDTTPFVKISIEK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++  +      + ++ T  ++ + G ++ + ++ G+V
Sbjct: 340 VVHTFIEAMVLVFLVMYLFLQNVRYTFIPAIVAPIALLGTFTVMLMSGFSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +           +    +      + +   
Sbjct: 400 LAIGIIVDDAIVVVENVERIMAEEGLGPKEATQKAMKEITGAVVGITLVLSAVFIPMAMA 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
               G   R F ++M +SILIS F A+S+  A+   +          +       +    
Sbjct: 460 TGSVGTIYRQFTLSMAVSILISAFLALSLTPALCATLLKPIDKNAHEKRGFFGWFNRKFS 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +        +A    R        + L  +  + +          + +G     +     
Sbjct: 520 AMTDRYESGVARMLKRVGRSLAVYAALCVVLFLSMRSVPSSFLPEEDQGYFLTSIQLPS- 578

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            D +  R+        D        E N  +      G           +K         
Sbjct: 579 -DATEERTLGVVKTFEDTVLGREGIETNLSIMGFSFSGSGPNSAMAFTTLKDWGKRQGAT 637

Query: 649 STIQNTEIVGPKISRE 664
           +  ++  ++       
Sbjct: 638 AASESGHVLEALYGHP 653



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 87/257 (33%), Gaps = 16/257 (6%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V LS V       Q    S +                 ++V     +++    ++
Sbjct: 255 RDGSRVILSDVARLELGPQSYTFSTRENGQISTGAAIQLAPGANAVRTADQIKLRLDDLS 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAIT 698
           + +P               +  I K +   I + + + + +++     R+ +  A+ A  
Sbjct: 315 KAMPSGMQYTIPFDTTPFVKISIEKVVHTFIEAMVLVFLVMYLFLQNVRYTFIPAIVAPI 374

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L      T     + G   N+  +  ++  IG  V+D +VV + +     +    +  +
Sbjct: 375 AL----LGTFTVMLMSGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMAEEGLGPK 428

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIF 814
           +   K++ E  G  V  ++    +V          +      F + MA  I+++A  ++ 
Sbjct: 429 EATQKAMKEITGAVVGITL-VLSAVFIPMAMATGSVGTIYRQFTLSMAVSILISAFLALS 487

Query: 815 IAAPILLFIYDWRAKNA 831
           +   +   +     KNA
Sbjct: 488 LTPALCATLLKPIDKNA 504



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 65/168 (38%), Gaps = 7/168 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              + +++S + + + +   ++ W   L  +  + L +   +    +  +  ++     ++
Sbjct: 866  APMLMVLSMLVVFLVLAALYESWAVPLSVLMVVPLGLLGAVLAVMMRDMSNDVFFKVGMI 925

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            T+IG S  + +++ +  +   +++       +   ++    L   + TS+A  + V+P+ 
Sbjct: 926  TIIGLSAKNAILIVEFAK---QMHEGGKGLLESTIEAARMRLRPILMTSLAFTLGVVPLM 982

Query: 788  VWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +  G       +    +  G+V     +IF        +     K  R
Sbjct: 983  IASGASAETQHAIGTGVFGGMVSGTILAIFFVPVFYFSVMKVVEKFTR 1030


>gi|261250922|ref|ZP_05943496.1| protein-export membrane protein SecD [Vibrio orientalis CIP 102891]
 gi|260937795|gb|EEX93783.1| protein-export membrane protein SecD [Vibrio orientalis CIP 102891]
          Length = 615

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 159/512 (31%), Positives = 264/512 (51%), Gaps = 25/512 (4%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            F   S+  ++ S +  + I LGLDLRGG   +L VD D           DE+R FL++E
Sbjct: 116 TFSYVSVAPQWLSELGFSPIKLGLDLRGGVQFLLNVDIDKAFEDQRNSLVDEVRDFLRQE 175

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            I    +  + ++    F      E     V  FL+                      I+
Sbjct: 176 RIRGVQITAVGSE---GFDIKSNSEQAMGAVGDFLKQ--------NYPTWDAKRHSDYIA 224

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +  +  +  +  S  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS  + 
Sbjct: 225 VKPTLQSKSEFQSVTIKQNLKIMRDRIEELGITEALVQRQGEHSIRIELPGVQDPSLAKN 284

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA ++FH+    + +K   +G   L+D+DG    +  +  ++G H+  A A  D  
Sbjct: 285 VIGATATLAFHESRSPSEEKA--YGDIVLKDNDGRDVTLAKRAVLTGEHIINARAGIDKM 342

Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
               V        G            +    V R+              + +    Q+  
Sbjct: 343 GFSEVNISLDHAGGKIMSDFSGTHIGKPMATVYREYTTNAKGETERSEKVISVATIQSQL 402

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  GL 
Sbjct: 403 GSQFRITGAGSMEDAQNLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGLA 462

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432
           + + FM + Y + G VA+ ++ +N++  L L++LL  A LTLP IAG+VL +G+AVD+N+
Sbjct: 463 MTLTFMALWYRRLGWVANVALMVNMVSLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 522

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+ ERI+++  + ++   S+D+GF  A STI D+NIT +I  VVL+  G G ++GFA+T+
Sbjct: 523 LIFERIKDKLAEGRTFAQSIDLGFGSALSTILDANITTMITAVVLYSIGNGPIQGFALTL 582

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GL +L SMF+ +   RA++  +      + + 
Sbjct: 583 GLGLLTSMFSGVFASRAIINLVWGRDARRDVR 614



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 77/176 (43%), Gaps = 5/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +G  +  E I+ G   + +     L ++ + ++      A   L++++   LG  AL  
Sbjct: 440 TIGASLGAENIQNGFAALALGLAMTLTFMALWYR-RLGWVANVALMVNMVSLLGLIALLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  +       +F   ID      L   + 
Sbjct: 499 GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLAE---GRTFAQSIDLGFGSALSTILD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++   I+ + +   G   I  FA+ +  G++ +  S +F +  I+  ++   A+ 
Sbjct: 556 ANITTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFSGVFASRAIINLVWGRDARR 611


>gi|70730635|ref|YP_260376.1| multidrug efflux RND transporter [Pseudomonas fluorescens Pf-5]
 gi|68344934|gb|AAY92540.1| multidrug efflux RND transporter [Pseudomonas fluorescens Pf-5]
          Length = 1032

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 81/687 (11%), Positives = 185/687 (26%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P+  P               + +    
Sbjct: 8   RPVFAWVVAFFILLAGALAI-----PQLPVAQYPTVAPP-------------QIEIYAAY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  L +     +   L                   IT +F      E     V   
Sbjct: 50  PGASAQTLDESVVSLIEQELNGADHLLYFSSQSSLGSATITATFQPGTNPELAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V  +L     +  L         ++L          + +  S  + R  +++I   +
Sbjct: 110 LKAVEPRLPQAVTQQGLQVEKVSAGFLLLITLTSSDGRLNDVALSDYLARNVMNEIRRLD 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +L     T A ++      N        G      S  
Sbjct: 170 GVGKAQLYGA-ERAMRIWLDPQKLIGFNLTPADVNAAVAAQNAQVPAGSIGDLPNPASQE 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +  K ++S                +    +                 +        
Sbjct: 229 ITATILVKGQLS-------------SPEEFADIVLRANPDGSTVRIGDVARVEVGSQEYQ 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G  L                +   T          L           +          S
Sbjct: 276 YGTRLNGKPSTAVGVQLSPGANALNTATLIRAKMDELSRYFPAGVEYKIPYDTSPFVKVS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +    T A    LV +V+F+ +   ++ L+    + + ++ T A +  LG ++ + ++ 
Sbjct: 336 ITKVLYTLAEAMVLVFLVMFLFLQNIRYTLIPTLVVPVALMGTFATMLALGFSINVLTMF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   + +
Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMATEGLSPKEATRKAMQQITGAIIGITLVLVAVFIPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            F  G      + F+++M  SIL S F A+++  A+   +         +++        
Sbjct: 456 AFMPGSVGVIYQQFSLSMATSILFSAFLALTLTPALCATLLKPIAAGEHHERTGFFGWFN 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                L            +  G  + I  ++ +I  L    L             +   +
Sbjct: 516 RRFERLSDSYQGGVTYALKRTGRYLLIYLALLAIMALLFSRLPSSFLPVEDQGYTITDIQ 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +     ++ ++  +    +  G  +  + L +    +     +     K  ++   
Sbjct: 576 LPPGASQNRTIKVVEQIEAHNASEPGVGDSTIILGFSFSGNGQNAALAFTTLKDWSQRSS 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             +  +           +    +  V+
Sbjct: 636 EDSAMSIADRANAALGAIKDAVVYAVL 662



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q      +        +        +++    ++     +++   
Sbjct: 257 STVRIGDVARVEVGSQEYQYGTRLNGKPSTAVGVQLSPGANALNTATLIRAKMDELSRYF 316

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I K +  +  + + + + +++  +   + L     + + + 
Sbjct: 317 PAGVEYKIPYDTSPFVKVSITKVLYTLAEAMVLVFLVMFLFLQNIRYTLIPTLVVPVALM 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++  IG  V+D +VV + +     + T  +S ++   K++
Sbjct: 377 GTFATMLALGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMATEGLSPKEATRKAM 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  ++      +PMA   G   VI   F++ MA  I+ +A  ++ +   +   
Sbjct: 435 QQITGAIIGITLVLVAVFIPMAFMPGSVGVIYQQFSLSMATSILFSAFLALTLTPALCAT 494

Query: 823 IYD 825
           +  
Sbjct: 495 LLK 497



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 83/232 (35%), Gaps = 13/232 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A + V LS       SL    ++  N                   A   +  +V +  T
Sbjct: 788  SAGKMVPLSAFVRASWSLGPAQLTRYNGYPAIAVSGEPAPGHSTGEAMQEIERLVAQLPT 847

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             +    T  + +         ++      + +S + + + +   ++ W      +  + L
Sbjct: 848  GLGLEWTGLSLQERLSGSQAPML------LGLSLLIVFLCLAALYESWSIPTSVLLVVPL 901

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +   +L G+  ++     ++T+IG S  + +++ +  +    LY       D   
Sbjct: 902  GVLGAVLAVSLRGMPNDVFFKVGLITIIGLSAKNAILIIEFAK---SLYDEGHDLIDATV 958

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASS 811
            ++    L   V TS+A  + V+P+A+  G+   S       +  G++ A  +
Sbjct: 959  QAARLRLRPIVMTSLAFILGVVPLAIATGASSASQQAIGTGVIGGMITATLA 1010


>gi|254518558|ref|ZP_05130614.1| protein-export membrane protein SecD [Clostridium sp. 7_2_43FAA]
 gi|226912307|gb|EEH97508.1| protein-export membrane protein SecD [Clostridium sp. 7_2_43FAA]
          Length = 290

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 152/288 (52%), Gaps = 8/288 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  +SI+  I  +    + GLN+GIDF GG ++ +      +       ++ +   
Sbjct: 7   KTKLWFALSIIVIIVGLGFTISRGLNFGIDFLGGTKVVIELGEGFNKPESDEIVKGIVPD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            ++             ++ +  DS   + V + ++ K +  +  + + + + +G  + +E
Sbjct: 67  AVTN----EANETEYEIKAKDLDSEKVSEVFKALQDKYS--LEDNALLSQDEIGASVGKE 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L R  ++ +I++  AMLIYI +RF+  + + AI  L+ D+  T+  FA+F I  N   +A
Sbjct: 121 LTRNSVIALIVACAAMLIYIAMRFEMNYGVAAIVALVHDLFITISVFAIFNIPVNTPFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +V++DR+R+N K      S  ++ +KS+ +T+ RS+ T++   I+++
Sbjct: 181 AILTIVGYSINDTIVIFDRIRENSKNM-RRASATEIANKSLTQTMSRSINTTLTTLITII 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + ++    +  F  P+  GI   A SSI IA+P+ + + D R K ++
Sbjct: 240 AVNIF-VPTVREFTFPLIIGIAAGAYSSICIASPVWVILKDKRGKKSK 286


>gi|94498646|ref|ZP_01305198.1| preprotein translocase subunit [Sphingomonas sp. SKA58]
 gi|94421876|gb|EAT06925.1| preprotein translocase subunit [Sphingomonas sp. SKA58]
          Length = 328

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 100/289 (34%), Positives = 165/289 (57%), Gaps = 2/289 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD   I F+  R W   ++ L ++ +I  +   GLN G+DF GG+ +     +
Sbjct: 1   MKLLKLVPDNTNIGFVAMRKWAFALTALLTVLAIGAVAHRGLNLGVDFVGGLMIEAKFPQ 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV-AQTRVLEMVKKKITEIV 646
            V+   VR+ +  L +G+ S Q F   K   +RL         A   V+E  +  +T   
Sbjct: 61  AVETDRVRATIARLGVGESSLQQFGDPKTVQIRLPLPEQGGAGAANAVVEKTRNAMTAQF 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P  T    + V  K+S ELI+ GI+ V+++ + + I+ W+R++W F +     ++ D+  
Sbjct: 121 PGVTFSRYDTVSGKVSGELIQNGILAVVLAVVGIAIFSWLRYEWQFGVSTFVAIMHDVLM 180

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           TLGFFA+  +EF+L  VAAVLT++GYS+NDK+V+ DR+R+NM+ Y   +  + LID S+N
Sbjct: 181 TLGFFAITQLEFDLNIVAAVLTIVGYSINDKMVIDDRIRENMRKYRK-MDMKALIDLSVN 239

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           ETL R+V TS+   +++  + ++GG V+  F   M  G+VV   SSI++
Sbjct: 240 ETLPRTVMTSLTILLALGSLLLFGGHVLRGFTAAMMLGVVVGTYSSIYV 288


>gi|188992252|ref|YP_001904262.1| multidrug efflux pump [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167734012|emb|CAP52218.1| multidrug efflux pump [Xanthomonas campestris pv. campestris]
          Length = 1075

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/547 (11%), Positives = 155/547 (28%), Gaps = 35/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +P   +  +P  +P +              V     
Sbjct: 32  RPIFAAVLSIIIFAAGLIA-----MPLLPISEYPEVVPPSVQ---------VRAVYPGAN 77

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 78  PKVIAETVATPLEEAINGV--EDMMYMKSVAGSDGVLVVTVTFKPGTDPDQAQVQVQNRV 135

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +   +++  S   + +  D++     
Sbjct: 136 SQAQARLPEDVRRQGVTTQKQSPTLTMVVHLTSPKGKYNSLYLSNYALLKVKDELSRLPG 195

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP ++     T + +       N        G   + +    
Sbjct: 196 VGQIQIFGAGDYAMRIWLDPDKVAARGLTASDVVAAIREQNVQVSAGQLGAEPMPNKSDF 255

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  ++                +    +                 +         
Sbjct: 256 LLSINAQGRLTTEE-------------EFGNIVIRSGNSGEIVRLSDVARLELGAGNYTL 302

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +      A L                      S 
Sbjct: 303 RSQLDNQNAVGMGVFQSPGANAIELSDAVRAKMAELEKQFPQDMAWSAAYDPTVFVRDSI 362

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G
Sbjct: 363 SAVVHTLLEAVLLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAALYLLGFSINTLTLFG 422

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 423 LVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 482

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++           L        
Sbjct: 483 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAMLLKAHDAPKDGPTRLIDRLFGWI 542

Query: 537 CIAIQFM 543
                  
Sbjct: 543 FRPFNRF 549



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 922  SWTLPLAVILIVPMTLLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 979

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+      G  V     I +  G+
Sbjct: 980  -LEMHGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVFGHGAGAEVRSVTGITVFAGM 1038

Query: 806  VVAASSSIFIAAPILLFIYDW 826
            +      +F+     + +  W
Sbjct: 1039 LGVTLFGLFLTPVFYVALRKW 1059



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 55/143 (38%), Gaps = 14/143 (9%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N   +  ++  IG  V+D +VV + + +N++
Sbjct: 387 WRASIIPLLAVPVSVVGTFAALYLLGFSINTLTLFGLVLAIGIVVDDAIVVVENVERNIE 446

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 447 E---GLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 499

Query: 807 VAASS----SIFIAAPILLFIYD 825
           ++       S+ ++  +   +  
Sbjct: 500 ISTVISAINSLTLSPALAAMLLK 522


>gi|134299527|ref|YP_001113023.1| preprotein translocase subunit SecF [Desulfotomaculum reducens
           MI-1]
 gi|134052227|gb|ABO50198.1| protein translocase subunit secF [Desulfotomaculum reducens MI-1]
          Length = 292

 Score =  187 bits (474), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 87/292 (29%), Positives = 151/292 (51%), Gaps = 8/292 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
              ++ R     IS+   +  +  L T GLN GIDF GG  + +   + V    VR+ L 
Sbjct: 2   FHIIKKRKIYYIISLAIILIGMVSLLTKGLNLGIDFTGGNIVELQFKKSVTAESVRAVLA 61

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             ++ D   Q             Y            +     I+E +  +T+   E+VGP
Sbjct: 62  EYKLADSKVQTSGENT-------YLIRTHALTQEESDKAFNAISEKLGGATVLRNELVGP 114

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I +EL R+ I+ + I+++ M++YI  RF++   + AI  L+ D+   +G  +L  IE +
Sbjct: 115 VIGKELTRQAILALAIASVLMILYITWRFEFLQGISAIGALLHDVLVMVGMASLLQIEID 174

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            T VAAVLT+IGYS+ND +V++DR+R+NM+  +      DL++KS+ +T+ RS+ T +  
Sbjct: 175 STFVAAVLTIIGYSINDTIVIFDRIRENMRK-SRKEDLADLVNKSLWQTMARSINTVLTV 233

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              ++ + ++GGS I +F   +  G++  A SSIF A+P+   +   + +  
Sbjct: 234 VFVLVALLLFGGSTIHNFVSLLLIGVISGAYSSIFNASPVWFDLRRIQKERK 285


>gi|323493404|ref|ZP_08098526.1| preprotein translocase subunit SecD [Vibrio brasiliensis LMG 20546]
 gi|323312227|gb|EGA65369.1| preprotein translocase subunit SecD [Vibrio brasiliensis LMG 20546]
          Length = 615

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 157/513 (30%), Positives = 263/513 (51%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           DE+R FL++
Sbjct: 115 ISFSYVSVAPKWLSDMGFSPIKLGLDLRGGVQFLLNVDIDKAFEDQRNSLVDEVRDFLRQ 174

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +    +  + ++   +F      E     V  FL+               V      I
Sbjct: 175 ERLRGVQISAVGSE---AFDVKAASEQALGSVQTFLKQ--------NYPTWDVKRHSDFI 223

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
           ++  +  +  +  S  ++Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS  +
Sbjct: 224 AVKPTLESKTEFQSVTLQQNLKIMRDRIEELGITEALVQRQGEHSIRIELPGVQDPSLAK 283

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++FH+       +G  +G   L+D+DG    +  +  ++G H+  A A  D 
Sbjct: 284 NVIGATATLAFHEA--RTPSEGKSYGDIVLKDNDGRDVTLAKRPVLTGEHIINARAGVDK 341

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+              + +    Q+ 
Sbjct: 342 MGFSEVNISLDHAGGKIMSDFSGGHIGKPMATVYREYTTNAKGETERSERVISVATIQSQ 401

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  GL
Sbjct: 402 LGSQFRITGAGSMEDAQNLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGL 461

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 462 AMTLTFMALWYRRLGWVANVALLVNMVSLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 521

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERI+++  + ++   S+D+GF  A STI D+NIT +I  VVL+  G G ++GFA+T
Sbjct: 522 VLIFERIKDKLAEGRTFAQSIDLGFGSALSTILDANITTMITAVVLYSIGNGPIQGFALT 581

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 582 LGLGLLTSMFSGVFASRAIINLVWGRDARRDVR 614



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 77/176 (43%), Gaps = 5/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +G  +  E I+ G   + +     L ++ + ++      A   L++++   LG  AL  
Sbjct: 440 TIGASLGAENIQNGFAALALGLAMTLTFMALWYR-RLGWVANVALLVNMVSLLGLIALLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  +       +F   ID      L   + 
Sbjct: 499 GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLAE---GRTFAQSIDLGFGSALSTILD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++   I+ + +   G   I  FA+ +  G++ +  S +F +  I+  ++   A+ 
Sbjct: 556 ANITTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFSGVFASRAIINLVWGRDARR 611


>gi|107028347|ref|YP_625442.1| hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|105897511|gb|ABF80469.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
          Length = 1065

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 68/688 (9%), Positives = 183/688 (26%), Gaps = 48/688 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G             + ++P+  P               + +   
Sbjct: 7   KRPILAWVMAIVIMLVGAAAV-----TSLPVAQYPTIAPP-------------SVQVTAT 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L        +   S    Q  ITL+F      +    +V 
Sbjct: 49  YPGASADTVAATVTQVIEQKLSGIDNVLYMSSTSSSAGQATITLTFNPGTNPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  +         +++   +      ++++    I  +  D +  
Sbjct: 109 NKVTQATPTLPQTVQEQGVQVAKASTSFLMIVALSSPGGTWNSVDLGNIIATRIEDPLAQ 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P +L     T + ++      N        G     DS
Sbjct: 169 LNGAGDVTLFGAQ-HAMRIWLNPVKLHSFGLTPSDVTTAITNQNVELSTGQVGGSPATDS 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     ++                +    +        R        +      
Sbjct: 228 QAINATIRSSSLLT-------------TADQFAGILLRVNSDGSRVLLKDVARVEVGGDS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L     +          +            A ++                    
Sbjct: 275 YDTSSRLNGKPASALAIKLATGANALDAANAVRAKLAEIQLQLPKDVAISYPYDTTPFVR 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+    + + ++ T  ++S++G ++ + S
Sbjct: 335 ISIEEVVKTLFEAVVLVFLVMYLFLQNVRATLIPTIVVPVALLGTFGVMSMIGFSINVLS 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     + +     +      +    +           +
Sbjct: 395 MFAMVLAIGLLVDDAIVVVENVERIMSEEKLGPKEATHKAMGQITGALVGVTTVLTAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FF G      R F+IT+  ++L+S+  A+++  A+   +++   ++  +      +F
Sbjct: 455 PMAFFAGSTGAIYRQFSITIVSAMLLSVMLALTLTPALCATLLKRADVEHHEKRGFFGWF 514

Query: 533 LIP-------DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        ++  + AR     +        + LL+    +  +  +      V  
Sbjct: 515 NRWFAKSNAGYSSSLARVVARPARYMLLYGAIAGVVALLYVTLPSSFLPDEDQGYFIVSI 574

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           + P      R+      +     ++  G K  +    +          +  +  K  +  
Sbjct: 575 SAPAGAPASRTLKTVEAVEQYVLKDEPGVKQVIAINGFSFNGQGQNNAIAFVTLKDWSLR 634

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +         +         I  +
Sbjct: 635 GSRDSASAIIARASQHFAGNRDARIFVL 662



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 84/244 (34%), Gaps = 6/244 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V          D S +      + L        +++     +     +I   +
Sbjct: 258 SRVLLKDVARVEVGGDSYDTSSRLNGKPASALAIKLATGANALDAANAVRAKLAEIQLQL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         R  I + +  +  + + + + +++  +     L     + + + 
Sbjct: 318 PKDVAISYPYDTTPFVRISIEEVVKTLFEAVVLVFLVMYLFLQNVRATLIPTIVVPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  ++ G   N+ ++ A++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTFGVMSMIGFSINVLSMFAMVLAIGLLVDDAIVVVENV--ERIMSEEKLGPKEATHKAM 435

Query: 766 NETLGR--SVYTSMAAFISVLPMAVWGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G    V T + A    +         I   F+I +   ++++   ++ +   +   
Sbjct: 436 GQITGALVGVTTVLTAVFIPMAFFAGSTGAIYRQFSITIVSAMLLSVMLALTLTPALCAT 495

Query: 823 IYDW 826
           +   
Sbjct: 496 LLKR 499



 Score = 45.1 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++     +L  IG S  + +++ +  +    L     S  D + ++ +  L   + 
Sbjct: 936  GLSNDIYFKVGLLATIGLSTKNAILIVEFAKD---LQAQGHSLVDAVLEAAHMRLRPILM 992

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
            TS+A    VLP+ +    G     +    +  G++ A   +I
Sbjct: 993  TSLAFVFGVLPLVISTGAGAGARHAIGTGVTGGMIAATVLAI 1034


>gi|315636646|ref|ZP_07891879.1| acriflavine resistance protein B [Arcobacter butzleri JV22]
 gi|315479072|gb|EFU69772.1| acriflavine resistance protein B [Arcobacter butzleri JV22]
          Length = 1041

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 79/640 (12%), Positives = 195/640 (30%), Gaps = 41/640 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++P   P  +I+                 
Sbjct: 9   RPIFAWVISLVIMIAGTVS-----LYTLPVEQYPDIAPP-QIN--------ISTTYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + L         S      +I+++F      +    +V   +  
Sbjct: 55  AETVENSVTQIIEQQLTGLDGMIYFSSSSSSTGNARISVTFQQGTDPDTAQVQVQNKVSA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L  D ++  +     +   ++L+    +   +  I+ +  ++    D I   +   
Sbjct: 115 ILSRLPEDVQRQGVRVVKSQTDFLLLASVYDETRKAQKIDIADYLVSNLQDSIARIDGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L       + +       N+       G     ++     
Sbjct: 175 EVQVYGGQ-YAMRIWLDPIKLESYNLMPSDIQSAINAQNSQASAGSLGALPTLENQQLSV 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +V  +                    +    I    +            +           
Sbjct: 234 IVTARS-------------KFKVVQEFENIIVKSNVDGSFVKIKDVAKVEIGSQSYNVVT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +       +  +   T        A   A             +      S   
Sbjct: 281 SLNGYPSSGIAIQLASGANAVKTANAIKDFLAKSEASLPEGYKIDYPRDSTLFIKASIKE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+ V+++ +   +  L+   ++ + ++ T  +L++LG ++   ++ G+V
Sbjct: 341 VVKTLFEAILLVIAVMYIFLKNYRATLIPAIAVPVVILGTFGILNILGYSINTLTMFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +     +N  S   +  +      S  I  + + +++   + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERNMSENNLSPKEATILSMHEITSALIGVATVLSVVFLPMAFF 460

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
            G      R F+IT+  S+++S+  A+++  A+    +  +K+ +  +      +F    
Sbjct: 461 SGSTGVIYRQFSITIISSMVLSVVVALTLTPALCATILKPHKEQEESNKKGFIYWFTKKF 520

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI-------DFKGGIQLGVLANRPV 589
               +  + R   V  S    +    L+      + +         +    L V    PV
Sbjct: 521 EELTKRYKNRLHKVLESPKKYMFIYILIIGILGIFFMKLPTSFLPKEDQGSLMVRYTLPV 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                R+   +  I +          N +  +      + 
Sbjct: 581 GAVSSRTVDIAENIKNYFLTEEKNNVNSVFTISGISSQNS 620



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 77/196 (39%), Gaps = 12/196 (6%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            + A    L   +  + E   +   +++ +      +E+++     +++    M I++  
Sbjct: 303 TANAIKDFLAKSEASLPEGYKIDYPRDSTLFIKASIKEVVKTLFEAILLVIAVMYIFL-- 360

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +   L     + + I  T G   + G   N   +  ++  IG  V+D +VV + +  
Sbjct: 361 -KNYRATLIPAIAVPVVILGTFGILNILGYSINTLTMFGMVLSIGLLVDDAIVVVENV-- 417

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +   ++S ++    S++E     +  +    +  LPMA + GS       F+I    
Sbjct: 418 ERNMSENNLSPKEATILSMHEITSALIGVATVLSVVFLPMAFFSGSTGVIYRQFSIT--- 474

Query: 804 GIVVAASSSIFIAAPI 819
            I+ +   S+ +A  +
Sbjct: 475 -IISSMVLSVVVALTL 489



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 73/198 (36%), Gaps = 9/198 (4%)

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALG 695
              ++ +I                 +E +  G  G++ +   ++I++    +   W     
Sbjct: 842  MDEMDKIADSQASGTMHAWSGASYQERLSSGQAGILYAISILVIFLCLAALYESWSVPFS 901

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             +  + L +   +      G++ ++    A+LT IG    + +++ + +     LY   +
Sbjct: 902  ILMVIPLGVVGAVLAVYFRGLDNDVYFQVALLTTIGLVAKNAILIVEFV---DTLYKKGV 958

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
               +   K     L   V TS+A    ++P+A+    G +   S    +  G + A   +
Sbjct: 959  PLIEAAIKGATLRLRPIVMTSLAFIAGIIPLAISTGAGANSRISIGTGIIGGTLTATILA 1018

Query: 813  IFIAAPILLFIYDWRAKN 830
            IF      + I +  +K 
Sbjct: 1019 IFFVPLFFVLIKNIFSKK 1036


>gi|332876180|ref|ZP_08443959.1| putative ATP synthase F0, A subunit [Acinetobacter baumannii
           6014059]
 gi|323519166|gb|ADX93547.1| cation/multidrug efflux pump [Acinetobacter baumannii TCDC-AB0715]
 gi|332735614|gb|EGJ66662.1| putative ATP synthase F0, A subunit [Acinetobacter baumannii
           6014059]
          Length = 1031

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 76/691 (10%), Positives = 206/691 (29%), Gaps = 46/691 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   +        ++R+P   P               + +  +
Sbjct: 8   QRPIFANVLAIIVMAFGIFSVM-----NLPVERYPDIAPPK-------------ITVSAN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSSSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVIGLYDSTGKTGNIELSDYLTTHVVDNLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGGGETDVFGSQ-YAMRIWLNPDKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKSNKTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLVEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +     +   S   +           +    +      +
Sbjct: 396 LFALVLAIGLLVDDAIVVVENVERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG      R F+IT+  ++ +S+  A+ +  A+   I++            ++  
Sbjct: 456 PMSFLGGSIGVIYRQFSITLVAAMALSLIVALILTPALCALILKPNLQPQRWAVWFNQKI 515

Query: 533 LIPDCIAIQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                  I+        ++   V    L ++ ++            + +G + + +    
Sbjct: 516 EQLKNQYIKLVQTSIHYSKSVIVIFVALIAVFTLFYNGLKSGFIPKEDQGILSVQIKLVD 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +S  +   E ++   ++ ++ + +   +   +   G      +    +K        
Sbjct: 576 SAPISQSQKIGEQVRQYFLTQEDKNVDLVLIRYGRNYSGTGQNLAQGFIALKPWDVRTGK 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            ++ +  +    K         I   + +++
Sbjct: 636 ENSAEAIQKRAMKYFSHFNNAQINVTLPASV 666



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 8/212 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   +S ++   +S+ E  G  V  ++      +PM+  GG   VI   F+I 
Sbjct: 417 V--ERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   + ++   ++ +   +   I     +  R
Sbjct: 475 LVAAMALSLIVALILTPALCALILKPNLQPQR 506



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 77/246 (31%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 787  NDQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVASGSSSGQAMKDVEQLVNQQK 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             I           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 847  DIGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             +      +  +  
Sbjct: 907  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKNAIQAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 964  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 1023

Query: 826  WRAKNA 831
                 A
Sbjct: 1024 LFRSKA 1029


>gi|71276372|ref|ZP_00652649.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Xylella fastidiosa Dixon]
 gi|71898645|ref|ZP_00680815.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Xylella fastidiosa Ann-1]
 gi|170729423|ref|YP_001774856.1| preprotein translocase subunit SecD [Xylella fastidiosa M12]
 gi|71162834|gb|EAO12559.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Xylella fastidiosa Dixon]
 gi|71731592|gb|EAO33653.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Xylella fastidiosa Ann-1]
 gi|167964216|gb|ACA11226.1| protein-export membrane protein SecD [Xylella fastidiosa M12]
          Length = 614

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 146/520 (28%), Positives = 249/520 (47%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  L+VD+   +N  +  + +E+RS L    I
Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFALQVDQKAALNKRMDAFVEEVRSTLGSNRI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           G   + R+  N I ++F D          +               +  L  + +   +  
Sbjct: 163 GFRMVERRPDNTIRVTFDDDAHLNEARMVLFKE------------QVGLSYSVSGNTLIA 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +S+N + Q+ S A+EQ++  +R RI+++G++E  IQR G  RI+++LPG QD +  ++L
Sbjct: 211 RVSENELRQIASGAVEQNLTTLRNRINELGVAEPIIQRQGDDRIVVELPGVQDTAEAKRL 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  ++ +    G                  L+  +V +SG  +  AT 
Sbjct: 271 IGATATLEFRGVVDGDAYEAVRTGNVPPEARVYYIRGTNQPVLLNKRVIVSGDEMVNATV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
             D      V     +  G R                      T   +       +  + 
Sbjct: 331 GVDENGMPAVNVTLSNVAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A   GK   +       A  L+ +LRAGSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALSPTRIAGVFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G++   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 451 RGVTAVVFSFLFTLVFFTIYYRMFGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A STI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ R++   I   +    
Sbjct: 571 GPLKGFALTMIIGIFASMFTAITVSRSLSALIYGTRNNLK 610



 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 97/280 (34%), Gaps = 4/280 (1%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +     ++  +    +           + V+    +    +    E   +          
Sbjct: 337 MPAVNVTLSNVAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPT 396

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +    ++                +   +          ++GP +  E + +G+  V
Sbjct: 397 RIAGVFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAV 456

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           + S +  L++  I ++  F +     L+ ++   +   +LFG    L   A +   +G S
Sbjct: 457 VFSFLFTLVFFTIYYRM-FGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLS 515

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  V++ +R+R+ ++     +  R  I    ++     +  ++   I  + +  +G   
Sbjct: 516 VDANVLINERIREELR---HGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGTGP 572

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +  FA+ M  GI  +  ++I ++  +   IY  R     +
Sbjct: 573 LKGFALTMIIGIFASMFTAITVSRSLSALIYGTRNNLKSL 612


>gi|262195618|ref|YP_003266827.1| protein-export membrane protein SecF [Haliangium ochraceum DSM
           14365]
 gi|262078965|gb|ACY14934.1| protein-export membrane protein SecF [Haliangium ochraceum DSM
           14365]
          Length = 433

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 66/253 (26%), Positives = 122/253 (48%), Gaps = 6/253 (2%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE-----KNFLVRLQYQPGDSVAQTR 633
            ++ V A   +  +   +           +     E        +   + Q      + +
Sbjct: 157 NRIYVRAQTMITEAEASTFFSEQGKEMKPWDEVQSERFSTLNQAIGVYEQQFAVWGVERQ 216

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
               ++  + E    +++  +  VG +   EL   GI  +  +   +++Y+  RF   +A
Sbjct: 217 FETALEASLQERNLDASLIQSWAVGARAGDELRDDGIKSLFYAIALIMLYLAFRFDVRYA 276

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            GA+  L+ D     G FA+   E +LT+VAA+LT+IGYSVND V+++DR+R+N      
Sbjct: 277 PGAVVALLHDALLVTGVFAVTWTEVSLTSVAALLTVIGYSVNDTVIIFDRIREN-AERLK 335

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
                 +++ S+NETL R++ TS+  F+  + M V+G   + +FA  M  G++V   SSI
Sbjct: 336 DKRLERVVNISLNETLSRTLLTSLTLFVVTVMMNVFGTGEVANFAFAMNIGVIVGVYSSI 395

Query: 814 FIAAPILLFIYDW 826
           F+A+P L+++   
Sbjct: 396 FVASPTLIYLDKK 408


>gi|225163464|ref|ZP_03725779.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Opitutaceae
           bacterium TAV2]
 gi|224801925|gb|EEG20206.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Opitutaceae
           bacterium TAV2]
          Length = 1045

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 65/689 (9%), Positives = 174/689 (25%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GLL           + ++P+                  + +    
Sbjct: 8   RPVFAWVLAILLMGAGLLAI-----RTLPVSQYPNIASP-------------QVEITAFY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +Q      +   +     I     R   +    IT++F +    +    +V  
Sbjct: 50  PGASAETVQNTVAQVIEQQMTGIDHIRYMETRSDSDGRVTITITFNNEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ  +  L  + ++  +         +++     +    +  + +  +     + I   
Sbjct: 110 KLQLADPLLPQEVQQQGVTVKKSVRNFLIVYSFYTEDGSLNKDDMADYVSANLKEPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    +  ++     T  +++      N       FG        
Sbjct: 170 KGVGDVTLFGS-EYSMRIWLNADQMTNYGITVTEIASSLDAQNAQISAGQFGGAPAAPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                      +                 I     + 
Sbjct: 229 RLNANITVRTRL-------------QSPEAFAEVLLRVNEDGSLLRLGDVARIELGSEIA 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T+       A       P    +           
Sbjct: 276 AISAFYNGHETSGLAVKPATGANALETVRLLNEYIATQEQFFPPGMKVVPAYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++ T  +++  G T+   ++
Sbjct: 336 SIEEVIKTLIEAIVLVFLVMFLFLQNIRATLIPTIAVPVVLLGTFGIMAACGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERIMSEEGLSPREATRKSMEQITGALVGIALVLAAVFLP 455

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FF    G   R F+IT+  ++ +S+F A+++  A+   +           +       
Sbjct: 456 MAFFSGATGIIYRQFSITIATAMALSVFVAVTLTPALCATMLKPIPKGHHEEKRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +        L    +           +  + + ++               + +G + L +
Sbjct: 516 NRMFNRSTALYAGGVRRTIRGWGRSLLVYAGIIAVMVWIFGKLPTGFLPEEDQGVLLLQI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                       +  E ++   ++ +    E    V      G           ++    
Sbjct: 576 QLPAGSTQEQTVAVSEKVRDYFLTQEKEAVESVMNVAGVSFGGRGQNAGLGFVKLRDWEE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                                +    I  
Sbjct: 636 RPGKELRANAIAGRAMAHFSSIKEALIFA 664



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 79/214 (36%), Gaps = 6/214 (2%)

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
               E + L        +++   R+L        +  P               R  I + 
Sbjct: 281 YNGHETSGLAVKPATGANALETVRLLNEYIATQEQFFPPGMKVVPAYDTTPFVRISIEEV 340

Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           I  +I + + + + +++  +     L     + + +  T G  A  G   N   +  ++ 
Sbjct: 341 IKTLIEAIVLVFLVMFLFLQNIRATLIPTIAVPVVLLGTFGIMAACGFTINTLTMFGLVL 400

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG  V+D +VV + +     +    +S R+   KS+ +  G  V  ++      LPMA 
Sbjct: 401 AIGLLVDDAIVVVENV--ERIMSEEGLSPREATRKSMEQITGALVGIALVLAAVFLPMAF 458

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + G+       F+I +A  + ++   ++ +   +
Sbjct: 459 FSGATGIIYRQFSITIATAMALSVFVAVTLTPAL 492



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 65/165 (39%), Gaps = 10/165 (6%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS   + + +   ++ W   +  +  + L +   +    L GI  ++     ++T IG 
Sbjct: 876  AISLAIVFLCLAALYESWTVPISVMLVVPLGVIGAVMAVWLRGINNDVYFQVGLITTIGL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +  +     Y       +   ++  + L   + TS+A    VLP+A+    
Sbjct: 936  SAKNAILIVEFAK---AAYDQGTDLIEATIQAARQRLRPILMTSLAFGFGVLPLAIASGA 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL---FIYDWRAKNA 831
            G     +    +  G++ A   +IF+     +   +++  R K  
Sbjct: 993  GSGSQNAIGTSVLGGVIAATFLAIFLIPVFYVTVTWLFQGRKKQK 1037


>gi|313206599|ref|YP_004045776.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Riemerella anatipestifer DSM 15868]
 gi|312445915|gb|ADQ82270.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Riemerella anatipestifer DSM 15868]
          Length = 1055

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 73/540 (13%), Positives = 158/540 (29%), Gaps = 41/540 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  +G+L  L        + +FPS  P               + +  +
Sbjct: 7   KRPVLSIVISLIIVFLGVLSLL-----SLPITQFPSISPPK-------------VNITAE 48

Query: 62  EDDFVNGF-LQMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N   ++     L   L    G+   +     +    I + F         A  V 
Sbjct: 49  YPGANNELLVKSVVIPLEQALNGVQGMKYITSDAGNDGVASIQVVFNLGTDPNLAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL     +  +  T E+   ++      D   +             + ++  
Sbjct: 109 NRVSSAINKLPPLVVREGVKITREEPNMLMYVNLYSDDPKADQKFLFNYADINILPELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P RL     +T ++       +        G    + S
Sbjct: 169 VNGVGFADILGTREYAMRIWLKPDRLTAYNISTDEVMEALSSQSLEASPGRTGESSGKRS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++                           I                ++    ++
Sbjct: 229 QAFEYVLKYPGRFDNE-------------KDYGNIIVKANSNGEFVRLKDVADVEFGSSM 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG-SLPIKLNIVEERNVGAD 355
                 L                + +  I+    L   L            +        
Sbjct: 276 YDIYSTLNGKPSAAITIKQSYGSNASEVIKNVKTLLEELNKTSFPKGMHYEISYDVSRFL 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV IV+F+ +   +  L+   ++ +++I   A++S  G T+ + 
Sbjct: 336 DASMEKVVHTLFEAFVLVGIVVFIFLGDWRSTLIPALAVPVSLIGAFAVMSSFGITVNMI 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +V+ IG+ VD  I+V E +  +  +   S   +           I    +      
Sbjct: 396 TLFALVMAIGVVVDDAIVVIEAVHAKMEEKHLSPLEATQEAMGEISGAIIAITLVMAAVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F  G      R F+ITM  SI++S   A+++  A+   I++    K     P++RF
Sbjct: 456 IPVAFMSGPVGVFYRQFSITMASSIILSGIVALTLTPALCALILKNNHGKERKKTPINRF 515



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 83/249 (33%), Gaps = 13/249 (5%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V      S      S  N        ++  Y    S     V  ++++      P    
Sbjct: 265 DVADVEFGSSMYDIYSTLNGKPSAAITIKQSYGSNASEVIKNVKTLLEELNKTSFPKGMH 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
                   +     + K +  +  + + + I ++I    W   L     + + +      
Sbjct: 325 YEISYDVSRFLDASMEKVVHTLFEAFVLVGIVVFIFLGDWRSTLIPALAVPVSLIGAFAV 384

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            + FGI  N+  + A++  IG  V+D +VV + +    K+    +S  +   +++ E  G
Sbjct: 385 MSSFGITVNMITLFALVMAIGVVVDDAIVVIEAVH--AKMEEKHLSPLEATQEAMGEISG 442

Query: 771 RSVYTSMAAFISVLPMA--VWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPI-LLFI 823
             +       +         +    +      F+I MA  I+++   ++ +   +  L +
Sbjct: 443 AII---AITLVMAAVFIPVAFMSGPVGVFYRQFSITMASSIILSGIVALTLTPALCALIL 499

Query: 824 YDWRAKNAR 832
            +   K  +
Sbjct: 500 KNNHGKERK 508



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 80/250 (32%), Gaps = 10/250 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +               +    Q     ++        + I E   
Sbjct: 790  YVKNDKEEMVPYSDFMHMEKVYGMSEITRHNMYNSAQISGYPSEGYSSGQAIEAIKETAD 849

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWI---RFKWYFALGAITTLILD 703
             +  +   I    IS++ + +G   V I  I +  +Y+ +      +   L  I  L   
Sbjct: 850  KTLPRGYGIDWAGISKDEVGRGNEAVYIFLICLGFVYLILSAQYESFILPLPVILCLPAG 909

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I     F  LFG+E N+ A  A++ LIG    + V++ +     ++      +      +
Sbjct: 910  IFGAFLFLKLFGLENNIYAQVALVMLIGLLGKNAVLIVE---YAVQRKNEGATILKAAIE 966

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    ++P+A+  G   I   +     A G+ +     + +   + 
Sbjct: 967  GAVTRFRPILMTSFAFIAGLIPLALATGPGAIGNRTIGTAAAGGMFIGTIFGVVLIPGLY 1026

Query: 821  LFIYDWRAKN 830
            L       KN
Sbjct: 1027 LIFGKIARKN 1036


>gi|186472344|ref|YP_001859686.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           phymatum STM815]
 gi|184194676|gb|ACC72640.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phymatum STM815]
          Length = 1052

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 63/571 (11%), Positives = 143/571 (25%), Gaps = 46/571 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIILMLAGIASIF-----NLPISQYPTIAPPA-------------VQISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGASAKTVENTVTQVIEQQMSGLDHLLYMSSSSDDSGSATITLTFEAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++     T      +++             + +  +     D +   
Sbjct: 110 KLQLATPLLPESVQQQGTKVTKSSSSFLLVMAFVSTDGSMDRYDLANYVASHVEDPVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D ++L Q   T   +       N        G        
Sbjct: 170 NGVGTVQLFGSQ-FAMRVWLDANKLNQYSLTPVDVETALTNQNVQVAAGSLGGTPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +     +                 +    +        +        I       
Sbjct: 229 VLQATITQATLL-------------QTPEQFGNVLLKVNQDGSQVRVKDVARIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L        +             
Sbjct: 276 NFDTEYNGQPTAGFGIQLATGANALETATLVRAKIDQLSKNFPHGLVVKYPYDTTPFVKM 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A++S  G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLLGTFAIMSAAGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K +          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVAAMVLSVLVALVLTPALCATI-----LKPVPKGHHGAKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLL 564
                   F   R             S   L
Sbjct: 511 FFGWFNRTFDNGRDRYHSGVQHVIRRSGRWL 541



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 87/246 (35%), Gaps = 7/246 (2%)

Query: 591  LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             S     L S+  G   + +   E+   +      G + A     + +         L  
Sbjct: 793  SSGTMMPLTSVASGHWIYGSPKLERYNGIASVELQGQAAAGKSTGQAMSAMEALAAKLPQ 852

Query: 651  IQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
                E  G          +  +   IS + + + +   ++ W      I  + L +   L
Sbjct: 853  GIGYEWTGLSFQERQSGSQAPILYGISILVVFLCLAALYESWSIPFAVILVVPLGVIGAL 912

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                + G+E ++     +LT +G S  + +++ +  R+        ++      ++    
Sbjct: 913  LAVTMRGLENDVFFQVGLLTTVGLSAKNAILIVEFARE--LQTNERMTAMQAALEASRLR 970

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A  + VLP+A+    G S   +    +  G++ A   ++F+     + I  
Sbjct: 971  LRPILMTSLAFVLGVLPLAISNGAGSSSQHAIGTGVIGGMLTATFLAVFMIPMFYVVIRS 1030

Query: 826  WRAKNA 831
              +++ 
Sbjct: 1031 KFSRDG 1036



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 77/220 (35%), Gaps = 6/220 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +  +   +                 +++    ++     ++++  
Sbjct: 258 SQVRVKDVARIELGGENYNFDTEYNGQPTAGFGIQLATGANALETATLVRAKIDQLSKNF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     L     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVKMSIEEVVKTLLEGIVLVFLVMYLFLQNLRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N  ++  ++  IG  V+D +VV + +     +    +S R+   K++
Sbjct: 378 GTFAIMSAAGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
            +  G  V  ++      +P+A  GGSV      F++ + 
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIV 475



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 64/522 (12%), Positives = 146/522 (27%), Gaps = 32/522 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WLV+   +I  +G L        +      P         L     G +       
Sbjct: 536  RSGRWLVLYVVVIVAVGFLFM------RLPKSFLPDEDQGTMFVLVQTPPGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    D + S     G       Q      +   D   +++   KV   +  
Sbjct: 590  LKNVTDYLLNDEKDIVESVFTVNGFSFAGRGQNAGLAFVRMKDYSVRQHANQKVQALVGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI--EQSMEIIRQRIDQIGISES 179
            V           +L         +  +     ++  +A    +++   R ++  +   + 
Sbjct: 650  VFGHYASYKDATVLAVNPPSIPELGTASGFDFELTDNASLGHEALMAARNQLLGMAAKDP 709

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            ++  +  + +      + D  R +        ++   +    S       V    D+DG 
Sbjct: 710  SLALVRPNGLSDTPQFKIDIDREKAQALG---VTVSDIDQTFSIAWASAYVNNFLDTDGR 766

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                  KV + G      T     K +                   +  +          
Sbjct: 767  I----KKVYLQGDAPFRMTPEDMSKWY-------VRGSSGTMMPLTSVASGHWIYGSPKL 815

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             R      +     +   + +G        + A + +           +ER  G      
Sbjct: 816  ERYNGIASVELQGQAAAGKSTGQAMSAMEALAAKLPQGIGYEWTGLSFQERQSG------ 869

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            S       I   +V + L  +             + L VI  L  +++ G    +    G
Sbjct: 870  SQAPILYGISILVVFLCLAALYESWSIPFAVILVVPLGVIGALLAVTMRGLENDVFFQVG 929

Query: 420  IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            ++  +GL+  + IL+ E  RE +  +  +   +           I  +++  ++  + L 
Sbjct: 930  LLTTVGLSAKNAILIVEFARELQTNERMTAMQAALEASRLRLRPILMTSLAFVLGVLPLA 989

Query: 479  FF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
                 G  +       +   +L + F A+ ++    + I   
Sbjct: 990  ISNGAGSSSQHAIGTGVIGGMLTATFLAVFMIPMFYVVIRSK 1031


>gi|222111499|ref|YP_002553763.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Acidovorax ebreus TPSY]
 gi|221730943|gb|ACM33763.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax ebreus TPSY]
          Length = 1055

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 72/643 (11%), Positives = 173/643 (26%), Gaps = 60/643 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L           L+++P   P               + +    
Sbjct: 8   RPIFAWVLSIIIMLAGGLAIF-----TLPLEQYPDIAPP-------------RVTISAQY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   LK    +           ++  TL+FA     +    +V  
Sbjct: 50  TGASAETVENSVTQIIEQQLKGIDNMIYMGSTSDASGRSATTLTFAPGTNIDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   ++L    K   +      +  +V            A++    +    +D IG  
Sbjct: 110 KLQSAMNRLPDAVKSRGVFVNKGGQDYLVTYSFFSGDPNMSAVDIGDYLNSNLVDVIGRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP+++ +     + +       N        G        
Sbjct: 170 DGVGDIRVFGT-FYAMRLWMDPAKMEKFQLMPSDLISALNAQNAQVSAGQLGALPAVPDQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +    +                 +      +
Sbjct: 229 QLNATITARTKL-------------QTVQEFEDIVLKTATDGSVVTVKDVARVELGPDNL 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L+          V   +      
Sbjct: 276 SVKAKLNGRPGAGMGIVLADGANAMAVSDAVAAKLAELKPYFPNQIDYFVSSDSTPFVRA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S             LV+IV+F+ +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SIREVATALGEAMVLVVIVMFIFLQNFRATLIPAIAVPVVLLGTFGVLAAAGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +    S   +           +    +T     V 
Sbjct: 396 FALVLAIGLLVDDAIVVVENVERVMHESGLSPKEATRHSMREITPALVGIGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------------- 517
           + FFGG      R F+IT+  ++ +S+  A+++  A+   I++                 
Sbjct: 456 MAFFGGSTGVIYRQFSITIVAAMALSVLVALTLTPALCASILKPSAHLGKDPQVRRGLLG 515

Query: 518 ---KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
              +     + +  +        +     RA+   +  + +       +          +
Sbjct: 516 LNDRFFVWFNRHFETNTLRYQRGVGWMLHRAKRMLLIFAAICLAVWWIIGRVPTAFLPDE 575

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
            +G I   V        + ++  L+ + +              
Sbjct: 576 DQGYILANVNLPAGATDARLQDVLDQVNLYFKDVPEVISFNQV 618



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 85/242 (35%), Gaps = 6/242 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                  V +  V           +  +        +  +     +++A +  +     +
Sbjct: 253 TATDGSVVTVKDVARVELGPDNLSVKAKLNGRPGAGMGIVLADGANAMAVSDAVAAKLAE 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           +    P               R  IR+    +  + + ++I ++I  + +   L     +
Sbjct: 313 LKPYFPNQIDYFVSSDSTPFVRASIREVATALGEAMVLVVIVMFIFLQNFRATLIPAIAV 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G  A  G   N   + A++  IG  V+D +VV + +     ++ + +S ++ 
Sbjct: 373 PVVLLGTFGVLAAAGYSINTLTMFALVLAIGLLVDDAIVVVENV--ERVMHESGLSPKEA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
              S+ E     V   +      +PMA +GGS       F+I +   + ++   ++ +  
Sbjct: 431 TRHSMREITPALVGIGLTLSAVFVPMAFFGGSTGVIYRQFSITIVAAMALSVLVALTLTP 490

Query: 818 PI 819
            +
Sbjct: 491 AL 492



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 79/268 (29%), Gaps = 11/268 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                     G   +       V          +     +   N       +         
Sbjct: 780  PHRMLPQDIGKWTVRNKNGEMVPFGAFSKAHWAYGSPQLMRYNGAPAYEMVGSAAPGVSS 839

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             VA   V +++K     I    T  + +         L+    + ++   + +     + 
Sbjct: 840  GVAMKIVEDILKGLPPGIAYEWTGASLQERQSGAQAPLLYA--ISILFVFLCLA---ALY 894

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W   L  +  + L +   L      G+  ++     ++T +G +  + +++ +     
Sbjct: 895  ESWTVPLSVMLAVPLGVLGALLATWTRGLANDVYFQVGLITTVGLASKNAILIVEFA--- 951

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFG 804
            ++L        D   +++   L   + TS+A    V+P+      G     +    +  G
Sbjct: 952  VQLQEQGRKLLDATLEAVRMRLRPILMTSLAFGFGVVPLALGTGAGAGGRNAIGTAVLGG 1011

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
             V +    IF+     L I  W    +R
Sbjct: 1012 TVASTVLGIFMVPVFFLLIRSWFKSRSR 1039


>gi|167033485|ref|YP_001668716.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           putida GB-1]
 gi|166859973|gb|ABY98380.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida GB-1]
          Length = 1042

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 83/687 (12%), Positives = 181/687 (26%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P+  P               + +    
Sbjct: 8   RPVFAWVVALFILLAGALAI-----PQLPVAQYPNVAPP-------------QVEIYAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  + +     +   L                   IT +FA     E     V   
Sbjct: 50  PGASAATMDESVVSLIEQELNGADNLLYFESQSSLGSATITATFAPGTNPELAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V S+L     +  L         ++L+    +         S  + R  +D+I   +
Sbjct: 110 LKVVESRLPRPVTQQGLQVEKVSTGFLLLATLTSEDGKLDETALSDILARNVMDEIRRLK 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +L     T   ++      N        G    RD+  
Sbjct: 170 GVGKAQLYGS-ERAMRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPSRDTQE 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K ++S                +    +    +            +        
Sbjct: 229 ITANVVVKGQLS-------------TPEEFAAIVLRANLDGSTVTIGDVARVEIGAQEYQ 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G  L                +   T          L           +          S
Sbjct: 276 YGTRLNGKPATAFSVQLSPGANAMETATLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV  V+F+ +   ++ L+    + + ++ T A++  +G ++ + ++ 
Sbjct: 336 IEQVINTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +      +      +    I    +  +   + +
Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMAEEGLPPKEATRKAMGQISGAIIGITLVLVAVFLPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            F  G      + F+++M +SIL S F A+S+  A+   +         + +        
Sbjct: 456 AFMQGSVGVIYQQFSLSMAVSILFSAFLALSLTPALCATLLKPVAKGEHHARKGFFGWFN 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                +            +  G  + +   + ++       L             +   +
Sbjct: 516 RRFESMSNGYQRWVVQALKRSGRYLVVYAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQ 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +      +     +       G  N  + L +    S     +     K  +E   
Sbjct: 576 LPPGASRMRTEQVAAQIEAHNAEEPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSERGT 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             + Q+          +L       V+
Sbjct: 636 DDSAQSIADRATMAFSQLKDAIAFSVL 662



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 81/243 (33%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q      +                 +++    ++    + +    
Sbjct: 257 STVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANAMETATLVRAKMQDLARYF 316

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I + I  +  + + +   +++  +   + L     + + + 
Sbjct: 317 PEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALM 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 377 GTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPKEATRKAM 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  ++      LPMA   GSV      F++ MA  I+ +A  ++ +   +   
Sbjct: 435 GQISGAIIGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSILFSAFLALSLTPALCAT 494

Query: 823 IYD 825
           +  
Sbjct: 495 LLK 497



 Score = 41.2 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W      +  + L +   +    L G+  ++     +
Sbjct: 866  QAPMLMALSLLVVFLCLAALYESWSIPTAVLLVVPLGVLGAVLAVTLRGMPNDVFFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG S  + +++ +  +    L    +   D   ++    L   V TS+A  + V+P+
Sbjct: 926  ITLIGLSAKNAILIIEFAK---HLVDQGVDAVDAAVQAARLRLRPIVMTSLAFILGVVPL 982

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSS 812
            A+  G+   S    +  G++    S+
Sbjct: 983  AIASGASSAS-QQAIGTGVIGGMLSA 1007


>gi|168700726|ref|ZP_02733003.1| protein-export membrane protein secD [Gemmata obscuriglobus UQM 2246]
          Length = 1137

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 66/215 (30%), Positives = 115/215 (53%), Gaps = 18/215 (8%)

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 + E+V             +  E+   +++ +   K ++ ++ S +A+L+Y+W RF
Sbjct: 897  DQLKALQEIVAGAKRAFDATPEPERLEVFDTQLASDTREKAMMAIVASWVAILLYLWFRF 956

Query: 689  K-WYFALGAITTLILDITKTLGF------------FALFGIE---FNLTAVAAVLTLIGY 732
              W F L A+  L+ D+  T+G             F+  GIE    +LT VAA+LTL+GY
Sbjct: 957  GNWTFGLAAVICLVHDLCFTIGAIAVCHYLHMIPGFSHLGIEDFKIDLTTVAALLTLVGY 1016

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            SVN+ +V + R+R+             +I+ S+N+TL R++ TSM  F++ + +  +GG 
Sbjct: 1017 SVNEIIVNFARLREVRGKNPQLTP--QMINDSVNQTLSRTILTSMTVFLASIVLYAFGGE 1074

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  FA  M  G++V+  SSIF+A+P+LLF+ + R
Sbjct: 1075 GVHLFAFVMVVGVLVSTYSSIFVASPLLLFLGEGR 1109



 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 89/201 (44%), Gaps = 4/201 (1%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
           D  +  R+++++K             +   +GP + ++ I +G   V  + +A+L ++ +
Sbjct: 401 DRKSVDRLVQILKSGALSAELREKPVSENTIGPTLGQDTIVRGTTAVGGAFVAVLAFMLV 460

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            +++   L A   L  ++  T+GF       F L  +A ++  +G +V+  V++Y+R+R+
Sbjct: 461 YYRF-AGLVACVALFANLLLTIGFMVAVNAAFTLPGLAGLVLTLGMAVDANVLIYERLRE 519

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
                    +    +           + T + +  + + +  +G   +  FAI +  G+V
Sbjct: 520 ER---NRGANIATALRNGYERAFLTIIDTHLTSIFTAIVLYTFGNDQLKGFAISLTVGLV 576

Query: 807 VAASSSIFIAAPILLFIYDWR 827
           ++  +S+++   +  F    +
Sbjct: 577 ISLFTSLYMTRLMFDFWLHKK 597



 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 129/766 (16%), Positives = 267/766 (34%), Gaps = 113/766 (14%)

Query: 1   MRNNPWLVILYSMI-CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+ N    +L  +I C +  +                  +      LG+DL GG+ LV E
Sbjct: 1   MQRNFIRGLLVCLIPCLVAAIF----------------VVRPQNYRLGIDLAGGTILVYE 44

Query: 60  VD----------------------------EDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
           ++                             +   +  +   + +++  +    I   ++
Sbjct: 45  INLERTKARKEVQGEAGAAAPAAAPQPGARAEGLSSEDMNTLAAQIKRRIDPTDIKNVTV 104

Query: 92  R-QIQNKITLSFA----------------------------------------DSRFKEN 110
           R    +++ +                                           D      
Sbjct: 105 RPSGNSRVEIILPTGGATTGNRENLSAEGIEEVKRLISQMGVLEFRILANGIDDQAGLIA 164

Query: 111 IADKVTLFL-----QGVNSKLNVDPKKNLLVTT-TEKEISIVLSQNNIDQVISHAIEQSM 164
               +               L  +   +       E +  +    + I      ++  S 
Sbjct: 165 ARQLIEGKSAGELEDRARKGLPPEAPADEFNVDIGESKARVRYVWSEIGPEQRESLGLSN 224

Query: 165 E----------IIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
                      +  QR   + + ++      +  +L+         +L +     A++  
Sbjct: 225 ASEGAGGLWGVLAGQRDKPVAVRDNAPADYVNCSMLLFSRKVVSTEQLAKEEADAARIKG 284

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH---LNGATANFDPKTHKPVVD 271
                 +++   +   +        +   ED + + G        A+A  DPK+  P V+
Sbjct: 285 ENPGKTDAEIEALVNRKKYEYFVLTRVSPEDSLRVGGNDGQITISASAGTDPKSLSPCVE 344

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA----IPSGKAQISGNFTIET 327
             F+  G ++F ++TR N            +L   V++          + QI+G F  ++
Sbjct: 345 FQFNTAGGQQFTKITRRNKPTGSTTRNLAILLDDRVVSAPTLQSEIGNRGQITGKFDRKS 404

Query: 328 AGILAAMLRAGSLPI--KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
              L  +L++G+L    +   V E  +G  LG D+I +GT A+    V ++ FM+V Y  
Sbjct: 405 VDRLVQILKSGALSAELREKPVSENTIGPTLGQDTIVRGTTAVGGAFVAVLAFMLVYYRF 464

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GLVA  ++F N++LT+  +  + A  TLP +AG+VL +G+AVD+N+L+ ER+REE  + 
Sbjct: 465 AGLVACVALFANLLLTIGFMVAVNAAFTLPGLAGLVLTLGMAVDANVLIYERLREERNRG 524

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            ++  +L  G+ RA+ TI D+++T++   +VL+ FG   ++GFAI++ + ++IS+FT++ 
Sbjct: 525 ANIATALRNGYERAFLTIIDTHLTSIFTAIVLYTFGNDQLKGFAISLTVGLVISLFTSLY 584

Query: 506 IVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           + R M  F +  K +  + +        F       I F       V    +F +     
Sbjct: 585 MTRLMFDFWLHKKWLTDLKMMQLFARPNFHPMKMRYIFFPLTAVLTVAGLAVFVVRGEAG 644

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L        +                            +             + ++    
Sbjct: 645 LNVDFRGGTVFAGKLKDGEERGLTKTADGKDGFRELLGEEAQKKRLALKAGDDAVIWENR 704

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
             GD    T +  +  +  T      T +        +  ++ ++ 
Sbjct: 705 PSGDERVNTWIYTVTYEDGTRATVTLTAKPEGGTDADMREDVRQRA 750


>gi|114331920|ref|YP_748142.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Nitrosomonas eutropha C91]
 gi|114308934|gb|ABI60177.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Nitrosomonas eutropha C91]
          Length = 954

 Score =  187 bits (474), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 80/627 (12%), Positives = 185/627 (29%), Gaps = 42/627 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+  L     +  +  FP   P               + +    
Sbjct: 9   RPRFAFVISIVIVLAGLISLL-----KLPVSLFPQITPP-------------QIQVSASY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + S +   EG+   S     N    + ++F      +     V  
Sbjct: 51  PGANAQVVEETVAAPIESVVNGVEGMLYMSSESANNGTYTLDITFEIGTDVDMAMVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L  D  ++ +    +    + +            +  S  I     D +   
Sbjct: 111 RLSLATPRLPEDVTRSGITVRKQSPEFLQMVSFTSPNGTYDQLFLSNFISLNVNDVLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +P ++  L  TT  ++      N        G   L    
Sbjct: 171 PGVSQVSIFGAQDYSIRIWLNPDKMVDLAITTEDVTAAIRDQNIQAAAGQVGQPPLAPDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY ++ K  +S             +  +    I   +             +       
Sbjct: 231 QFQYTIQAKGRLS-------------EVSEFQDIIIRAQADGSTVKMEDIARVELGSQTF 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +     +        L           +   +      
Sbjct: 278 NVLSRLNGSPAVNFAVYQLPEANALEVAQGIETTLKQLAERFPEDVEYALPYDSTRFINN 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T  I   LV++V++  +   +  L+   +I +++I T A+L ++G ++   S+
Sbjct: 338 SLTELVQTLFIALSLVILVVYAFIQDWRATLIPALAIPVSLIGTFAVLLVMGYSINTLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IG+ VD  I+V E ++   ++      +     +     +  + +  L   V +
Sbjct: 398 FALVLAIGIVVDDAIVVVENVQRHLQEGLPPGDATKKTMTEVTGPVIATTLVLLAVFVPI 457

Query: 478 FFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F  G +    R F++T+ +++ IS  TA+++  A+   ++R ++ +             
Sbjct: 458 AFLEGISGQLYRQFSVTIAIAVSISSLTALTLSPALCAMMLRKQQARPWFALRWFEKIFG 517

Query: 535 PDCIAIQFMRA---RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                  F      R   +   +L  I             G   +    +  +  +  D 
Sbjct: 518 KVSEGYLFCVKIVVRRLVLTALLLLIITGGAYWVFKNTPTGFIPQEDQGIIFVDIQLPDG 577

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFL 618
           + +      ++  D    N  G ++ +
Sbjct: 578 ASLNRTDNVVKQVDALLSNLPGVEDIV 604



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 89/246 (36%), Gaps = 7/246 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  +       Q  ++  +            Q    +++   + +E   K++ E  P 
Sbjct: 262 VKMEDIARVELGSQTFNVLSRLNGSPAVNFAVYQLPEANALEVAQGIETTLKQLAERFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                      +     + + +  + I+   +++ +      W   L     + + +  T
Sbjct: 322 DVEYALPYDSTRFINNSLTELVQTLFIALSLVILVVYAFIQDWRATLIPALAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N  ++ A++  IG  V+D +VV + +    +     +   D   K++ E
Sbjct: 382 FAVLLVMGYSINTLSLFALVLAIGIVVDDAIVVVENV---QRHLQEGLPPGDATKKTMTE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  + T++      +P+A      G +   F++ +A  + +++ +++ ++  +   + 
Sbjct: 439 VTGPVIATTLVLLAVFVPIAFLEGISGQLYRQFSVTIAIAVSISSLTALTLSPALCAMML 498

Query: 825 DWRAKN 830
             +   
Sbjct: 499 RKQQAR 504


>gi|300775730|ref|ZP_07085591.1| HAE1 efflux family protein [Chryseobacterium gleum ATCC 35910]
 gi|300505757|gb|EFK36894.1| HAE1 efflux family protein [Chryseobacterium gleum ATCC 35910]
          Length = 1063

 Score =  187 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 76/540 (14%), Positives = 162/540 (30%), Gaps = 41/540 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  +G+L  +     +  + +FPS  P               + +  +
Sbjct: 7   RRPVLSIVISLIIVFMGILSLV-----KLPVTQFPSISPPK-------------VNITAE 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N  L +     L   L    G+   +     +    I + F         A  V 
Sbjct: 49  YPGANNELLIKSVVIPLERGLNGVPGMKYMTSDAGNDGEASIQVVFDLGTDPNVAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V +KL     +  +  T E+   ++      D   +             + ++  
Sbjct: 109 NRVSSVVNKLPPLVVREGVKITREEPNMLMYINLYSDDPKADQKFLFNYADINIMSELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P RL     +  ++       +        G    + S
Sbjct: 169 VSGVGFADILGTREYAMRIWLKPDRLTAYNISADEVMESLNEQSLEASPGKTGESSGKRS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++                           I   +            +I    ++
Sbjct: 229 QSFEYVLKYPGR-------------YNNEKDYGNIILKAKPNGESVRLKDVADIEFGSSM 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA-GSLPIKLNIVEERNVGAD 355
                 L                + +  I+    L   L            +        
Sbjct: 276 YDIYSTLNGKPSAAITVKQSYGSNASDVIKNVKALMKDLEKNNFPKGMHYEISYDVSRFL 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV IV+F+ +   +  L+   ++ ++++ T A++S  G TL + 
Sbjct: 336 DASMEKVIHTLFEAFVLVAIVVFLFLGDWRSTLIPALAVPVSLVGTFAVMSAFGITLNMI 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           S+  +V+ IG+ VD  I+V E +  +  +   S   + +         I    +      
Sbjct: 396 SLFALVMAIGVVVDDAIVVIEAVHAKMEEKHLSPLKATEEAMHEISGAIIAITLVMASVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F  G      R F+ITM  SI++S   A+++  A+   I++    K+    P++ F
Sbjct: 456 IPIAFMSGPVGVFYRQFSITMASSIILSGVVALTLTPALCALILKNNHGKAKKKTPVTLF 515



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 89/241 (36%), Gaps = 7/241 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              S      S  N        V+  Y    S     V  ++K       P         
Sbjct: 270 EFGSSMYDIYSTLNGKPSAAITVKQSYGSNASDVIKNVKALMKDLEKNNFPKGMHYEISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     + K I  +  + + + I +++    W   L     + + +  T    + FG
Sbjct: 330 DVSRFLDASMEKVIHTLFEAFVLVAIVVFLFLGDWRSTLIPALAVPVSLVGTFAVMSAFG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I  N+ ++ A++  IG  V+D +VV + +    K+    +S     +++++E  G  +  
Sbjct: 390 ITLNMISLFALVMAIGVVVDDAIVVIEAVH--AKMEEKHLSPLKATEEAMHEISGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNA 831
           ++      +P+A   G V      F+I MA  I+++   ++ +   +  L + +   K  
Sbjct: 448 TLVMASVFIPIAFMSGPVGVFYRQFSITMASSIILSGVVALTLTPALCALILKNNHGKAK 507

Query: 832 R 832
           +
Sbjct: 508 K 508



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 81/251 (32%), Gaps = 17/251 (6%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            ++ V  S      +   + +++  N                   A   + E+  K +   
Sbjct: 796  DQMVPYSDFMRLEKVYGLSEMTRHNMYNSAQVSGTPAPGYSSGQAIQAIQEVADKTLP-- 853

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWI---RFKWYFALGAITTLI 701
                  +   I    IS++ + +G   V I  + +  +Y+ +      +   L  I +L 
Sbjct: 854  ------RGFGIDWAGISKDEVSRGNEAVFIFLVCLGFVYLILSAQYESFILPLPVILSLP 907

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I        L G+E N+ A  A++ LIG    + V++ +      K     I      
Sbjct: 908  VGIFGAFLCLKLLGLENNIYAQVAMVMLIGLLGKNAVLIVE--FAVQKKAEEGIPVAQAA 965

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +         + TS A    ++P+ +    G     +     A G+++     + I   
Sbjct: 966  IEGAAIRFRPILMTSFAFIAGLIPLVIATGPGAVGNRTIGTAAAGGMLIGTVFGLMIIPG 1025

Query: 819  ILLFIYDWRAK 829
            +         K
Sbjct: 1026 LYYIFGTIADK 1036


>gi|332999346|gb|EGK18932.1| inner membrane domain protein [Shigella flexneri K-272]
 gi|333014715|gb|EGK34061.1| inner membrane domain protein [Shigella flexneri K-227]
          Length = 569

 Score =  187 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 151/552 (27%), Gaps = 46/552 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  +  +P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVALYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +     +K +         
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL-----LKPVSAEHHENKG 509

Query: 533 LIPDCIAIQFMR 544
                    F  
Sbjct: 510 GFFGWFNTTFDH 521



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|218247668|ref|YP_002373039.1| preprotein translocase subunit SecF [Cyanothece sp. PCC 8801]
 gi|218168146|gb|ACK66883.1| protein-export membrane protein SecF [Cyanothece sp. PCC 8801]
          Length = 310

 Score =  187 bits (473), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 69/252 (27%), Positives = 140/252 (55%), Gaps = 10/252 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +     +P+    V+  L    +   + Q  +G    ++ ++ +  D   +T++ + + +
Sbjct: 58  VQGNCEKPISTGEVQEILNQQGLSSSTIQVLEGN---ILSIRSKTLDVDQRTKLQQALTE 114

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           KI +  P       + VG  + +EL   GI+ +++S   +++Y+ +RF++ +A  AI  L
Sbjct: 115 KIGQFDPE--TVQIDTVGATVGKELFTSGILALLVSFFGIIVYLSVRFQFDYAFFAIVAL 172

Query: 701 ILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + D+  T G FA+ G+    E +   + ++LT+IG+SVND VV+YDR+R+N+   T  ++
Sbjct: 173 VHDVLVTAGVFAILGLVAGVEVDSLFLVSLLTIIGFSVNDTVVIYDRIRENL-EKTPELT 231

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             D++D ++N+TL RS+ TS+   + ++ + ++GG  +  FA+ +  G +  A SSIFIA
Sbjct: 232 INDIVDNAVNQTLTRSINTSLTTVLPLIAIFLFGGETLKYFALALIIGFIAGAYSSIFIA 291

Query: 817 APILLFIYDWRA 828
           + +L    + + 
Sbjct: 292 STLLALWRNRQQ 303


>gi|186684141|ref|YP_001867337.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Nostoc
           punctiforme PCC 73102]
 gi|186466593|gb|ACC82394.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Nostoc
           punctiforme PCC 73102]
          Length = 1063

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 80/559 (14%), Positives = 159/559 (28%), Gaps = 40/559 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  IGL+       P   + RFP   P             + + +  +
Sbjct: 8   KRPIFASVCAIVILLIGLISI-----PTLPIARFPEISP-------------TQITVTSN 49

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++   ++ L   +        +   S     + IT +F  SR K+  A  V 
Sbjct: 50  YSGASAEVVESGVTNILERQINGVEGLRYLTSSSSNDGTSTITATFDSSRDKDIAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L    ++  +  + E    ++      +      I  S        D +  
Sbjct: 110 NRVSVAQPQLPDSVQRTGVRVSKESSNILLAIGLYAENREYDNIFLSNYADLYLADALKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    DPSRL     TT  ++      N        G     + 
Sbjct: 170 VKGVSNAQIFGERRYAMRLWLDPSRLANRGLTTKDVANALSEQNLQVGAGRIGQEPAPEG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V     ++             +  +    +                        
Sbjct: 230 QRYQLDVRAASRLA-------------EPAEFEEIVLKTGDDGTLVKLKDVGRAELGAEN 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +     +        L     P     V         
Sbjct: 277 YSSFLRFRGNDAVGLGIYQVPGSNALDVAKGVKDELVRLAPSFPPGLKYQVAFDTTSFVE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S S    T      LV+IV+F+ +   +  L+   +I L++I T A + +   ++   +
Sbjct: 337 ESMSEVIKTLIEAVVLVVIVIFVFLQDWRTTLIPALTIPLSLIGTFAFVKVFNFSINSLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYST-IFDSNITALIAT 474
           + G+ L  G+ VD  I+V E+I      K  +   +        +   I  S +   +  
Sbjct: 397 LFGLTLASGMVVDDAIVVVEQISRFIQDKGINPRRAASESMRELFGAVIATSLVLMAVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V FF G      R FA+T+  SI IS F A+++  ++   ++R  +  S  +  +    
Sbjct: 457 PVAFFPGTTGALYRQFALTIAFSIAISTFLALTLTPSLCALLLRQGQKPSGWLGWIFGKI 516

Query: 533 LIPDCIAIQFMRARFWGVG 551
                      +     + 
Sbjct: 517 NRFLDWVQNGYKRSLTFLT 535



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 60/146 (41%), Gaps = 5/146 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    T+ L +  T  F  +F    N   +  +    G  V+D +VV +++  + 
Sbjct: 363 DWRTTLIPALTIPLSLIGTFAFVKVFNFSINSLTLFGLTLASGMVVDDAIVVVEQI--SR 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    I+ R    +S+ E  G  + TS+      +P+A + G+       FA+ +AF I
Sbjct: 421 FIQDKGINPRRAASESMRELFGAVIATSLVLMAVFVPVAFFPGTTGALYRQFALTIAFSI 480

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
            ++   ++ +   +   +     K +
Sbjct: 481 AISTFLALTLTPSLCALLLRQGQKPS 506



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 97/289 (33%), Gaps = 16/289 (5%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
             +    ++      + +             G + +    N+ V LS +    +++    I
Sbjct: 755  QYVNDFNLQQRNYRVYIQADQQFRSNPKDIGKLYVRSQKNQMVPLSNLVKVTQTVGAQTI 814

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
            +  N                   A   + ++ K+ +                     E+ 
Sbjct: 815  NHYNLFRSIEINGSAAPGSSSGDAIKAMEKVAKEVLPAGYGY-------EWSGTALEEID 867

Query: 667  RKGIVGVIISAIAMLIYIWIRFKW---YFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
              G+  +I     + +++ +  ++         + ++ L I   L   ++ G   ++   
Sbjct: 868  SGGLAPIIFGLGIIFVFLVLAAQYENYVDPFIILLSVPLAIFGALIAQSMRGFANDVYCQ 927

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ LIG +  + +++ +      +L    +S    + ++  E L   + T+ +  + +
Sbjct: 928  IGLVMLIGLASKNAILIVEFAN---QLREQGLSITKAVIEASQERLRPILMTAFSTLLGI 984

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             P+AV    G     S    +  G+++A   S+F+   + + I     +
Sbjct: 985  FPLAVATGAGAGSRQSLGTAVFGGMLIATFLSLFVVPILYIVIKTTTER 1033


>gi|258544912|ref|ZP_05705146.1| protein-export membrane protein SecD [Cardiobacterium hominis ATCC
           15826]
 gi|258519832|gb|EEV88691.1| protein-export membrane protein SecD [Cardiobacterium hominis ATCC
           15826]
          Length = 619

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 175/529 (33%), Positives = 279/529 (52%), Gaps = 38/529 (7%)

Query: 25  NFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL 81
           N +  ++L   P  +     + ++LGLDLRGG   +L+VD ++          D   S  
Sbjct: 97  NAISVNLLPNTPQWLQSMGLSPMNLGLDLRGGISFLLQVDSNELFTRKSAELIDIATSTT 156

Query: 82  KKEGI-GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           +K  I    +       + LSFA    +E   D++          L    ++  L    +
Sbjct: 157 EKNNIPMQGAEAAQNGGVILSFASDGDRERALDELRTL-------LPPGLEQVNLEENGQ 209

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
             + +  S+  I ++   A +Q+ + +  R++ +G++E +IQ +G  R+LIQLPG QD +
Sbjct: 210 YRVRLQYSEQGISELKRRAADQNRQRMTSRVNSLGVAEPSIQVVGDDRLLIQLPGIQDVA 269

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           + +++LG+TA + F+ V                FG +     DG+  L++ KV +SG H+
Sbjct: 270 KAKEMLGSTATLEFYIVDEQGDLAQAVRMKRAPFGSKLAYFEDGSPILLKRKVVLSGEHI 329

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------- 301
               A          VD+  D  G  +  +VTR+N+ KP+A +                 
Sbjct: 330 ID-AAVNPASQQGIAVDVVLDSAGGAQMAQVTRENLKKPMATIYVEYVPVTKNDENGNPV 388

Query: 302 -------VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   +      Q+  + + QI+G   +  A  LAA LRAGSL   + I+EER +G 
Sbjct: 389 TTVEKHETVVNSATIQSQFADRFQITGVTPLSRAQKLAATLRAGSLVAPVYIIEERTIGP 448

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
           + G  +I +G  A + GL  IV+FM++ Y K GL A+ ++ +N++L LAL+SLLGATLTL
Sbjct: 449 NAGKKNIDQGVNASLLGLAFIVIFMLIYYRKLGLYANLALVVNLVLLLALMSLLGATLTL 508

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL +G+AVD+N+L+ ERIREE  ++  +  ++ MGF+ A STI D+NIT LI  
Sbjct: 509 PGIAGIVLTLGMAVDANVLIYERIREEVHEHIEIHQAVRMGFANALSTIVDANITTLIVA 568

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           V+LF FG G ++GFA+T+ L IL +MFTAI + RA++ ++   K    I
Sbjct: 569 VLLFSFGAGPIKGFAVTLSLGILTTMFTAIFVTRALVEYLTLRKPNPKI 617



 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 107/256 (41%), Gaps = 5/256 (1%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K    + V            + + +++  +    +   +  F  R Q      +++ + L
Sbjct: 366 KPMATIYVEYVPVTKNDENGNPVTTVEKHETVVNSATIQSQFADRFQITGVTPLSRAQKL 425

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
               +  + + P+  I+    +GP   ++ I +G+   ++    ++I++ I ++    L 
Sbjct: 426 AATLRAGSLVAPVYIIEERT-IGPNAGKKNIDQGVNASLLGLAFIVIFMLIYYR-KLGLY 483

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A   L++++   L   +L G    L  +A ++  +G +V+  V++Y+R+R+ +  +   I
Sbjct: 484 ANLALVVNLVLLLALMSLLGATLTLPGIAGIVLTLGMAVDANVLIYERIREEVHEH---I 540

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
                +       L   V  ++   I  + +  +G   I  FA+ ++ GI+    ++IF+
Sbjct: 541 EIHQAVRMGFANALSTIVDANITTLIVAVLLFSFGAGPIKGFAVTLSLGILTTMFTAIFV 600

Query: 816 AAPILLFIYDWRAKNA 831
              ++ ++   +    
Sbjct: 601 TRALVEYLTLRKPNPK 616



 Score = 40.1 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 30/114 (26%), Gaps = 27/114 (23%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           W   L   I  +G L+ALPN+  +S                             V     
Sbjct: 8   WKYALIIAITLLGALLALPNWFGKSP---------------------------TVQMQFV 40

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                   + E+ + L    I     +     + L F  +  +    D +T   
Sbjct: 41  SPEAATAAAQEVTTQLHAANIEPSRWKVDGQNLNLFFPQTDVQIQARDLLTGKY 94


>gi|157376531|ref|YP_001475131.1| protein-export membrane protein SecF [Shewanella sediminis HAW-EB3]
 gi|157318905|gb|ABV38003.1| protein-export membrane protein SecF [Shewanella sediminis HAW-EB3]
          Length = 308

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 146/274 (53%), Gaps = 2/274 (0%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R++   IS++  I S+ ++   G N+G+DF GG+   V  +  +  + + S L  +  
Sbjct: 15  KWRYFSSCISLVLMILSLTVISVKGFNWGLDFTGGVVTEVRIDSDIKANQIESLLGKMSE 74

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            ++S  +      +++R              L+ +++ +  +     + N+ IVGP++ +
Sbjct: 75  QEVSVISAGEPGRWVLRYSQAETSGDVSANALD-IEQVLASLHSGVEVLNSSIVGPQVGQ 133

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + ++++ + +L Y+  RF+W  A GA+  L  D+   L FF+L  +EFNLT +
Sbjct: 134 ELAEQGGLALLVAMLCILGYLSFRFEWRLASGALFALFHDVIFVLAFFSLTQMEFNLTVL 193

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AAVL ++GYS+ND +++ DR+R+ +      ++  D+   ++  T  R++ TS    ++V
Sbjct: 194 AAVLAILGYSLNDSIIIADRIRELLTSKPK-MAISDVCTSAVKATFSRTMVTSGTTLMTV 252

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             + V GG  + SF+I M  GI+    SSI +  
Sbjct: 253 SALWVMGGGPLESFSIAMFIGILTGTWSSISVGT 286


>gi|330501836|ref|YP_004378705.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           mendocina NK-01]
 gi|328916122|gb|AEB56953.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           mendocina NK-01]
          Length = 1044

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 72/527 (13%), Positives = 157/527 (29%), Gaps = 40/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL       +    + ++P  +P               + +    
Sbjct: 9   RPVFATVISIVIVLAGLAA-----MRALPIAQYPEILPP-------------QVSVSAAY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIGV----FSMRQIQNKITLSFADSRFKENIADKVTL 117
               +  + +  +  L   +      +     S       +T+ FA     +     V  
Sbjct: 51  PGASSQVIAETVAAPLEQEINGVENMIYQLSNSSSSGAMSLTVYFAVGTDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   +KL  + ++  +    +    + +            I  S   +   ID++   
Sbjct: 111 KVQAALAKLPEEVRRQGVKVEKKSSDILQVITLYSPDGSRDPIFISNYALINVIDELKRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P +L Q   T   +       N+      FG + L++  
Sbjct: 171 KGVGDASQFGSKDYSMRIWLRPDKLAQYNLTPTDVVNAIREQNSQFAAGSFGQQPLKEPQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  +   +                +    I   +             +       
Sbjct: 231 DFTYTVTTQGRFT-------------DPKEFESVILRTDDTGASLLLKDVARVELGAQDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T E        L           +          
Sbjct: 278 SLVTTLNGQQNAAFGIYLQPGANALDTAEAVERTMQRLAKRFPEGIAYKIPYDTTKFVQV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   +I ++++ T A + LLG ++ L ++
Sbjct: 338 SIEEVIHTFFEALVLVVLVVFVFLQNWRATLIPVLAIPVSLVGTFAGMYLLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    R    +   +           I    +      V 
Sbjct: 398 FGMVLAIGIVVDDAIVVIENVERVMRTENLNARDAAIKAMEEVTGPIIAIVLVLCAVFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   + FAIT+ +S++IS   A+++  A+   +++    
Sbjct: 458 VGFLGGLAGQMYKQFAITIAVSVVISGIVALTLSPALCALLLKPGHH 504



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 66/169 (39%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G    +   I + + +  ++ +W   L  +T +   +   +    L GI+ ++     +
Sbjct: 869  SGAQAFVFGLILVFLILAAQYERWTLPLAVVTAVPFAVFGAILAVWLRGIQNDVYFQVGL 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG +  + +++ +     + L        +   ++        V TS+A  +  +P+
Sbjct: 929  VTLIGLAAKNAILIVEFA---VLLRAEGKGIFEAAQEAAKLRFRPIVMTSLAFILGCVPL 985

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+    G +   S    +  G++ A   + F+     L +     + +R
Sbjct: 986  AISSGAGSASRHSIGTGVIGGMLAATLLATFLIPMFYLLVESAAQRMSR 1034



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L  +  + + +  T     L G   NL  +  ++  IG  V+D +VV + +     
Sbjct: 364 WRATLIPVLAIPVSLVGTFAGMYLLGFSINLLTLFGMVLAIGIVVDDAIVVIENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           + T +++ RD   K++ E  G  +   +      +P+   G   G +   FAI +A  +V
Sbjct: 422 MRTENLNARDAAIKAMEEVTGPIIAIVLVLCAVFVPVGFLGGLAGQMYKQFAITIAVSVV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++ ++  +   +  
Sbjct: 482 ISGIVALTLSPALCALLLK 500



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 58/519 (11%), Positives = 136/519 (26%), Gaps = 37/519 (7%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRIS-LGLDLRGGSHLVLEVDEDD 64
                L  ++   G++  +     +      P       I+   L      +   E     
Sbjct: 532  LKRSLIGVLLFGGMIALILLLFARVPGSLVPDEDQGYVINAYYLPPAASLNRT-EALTGA 590

Query: 65   FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                 ++  + +         +  F +R       +   D   +           +    
Sbjct: 591  VSQQLMEHPAVQDVVTFAGFDVLTFGVRSNAGVSFVPLKDWSERTTDELDARNLTREFMG 650

Query: 125  KLNVDPKKNLLVTTTEKEISIVLS----QNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             +    K  L+++     I+ + +    ++ I      ++EQ  E ++  ++        
Sbjct: 651  -MGAAQKDGLVMSFNPPPITGMSTTGGFESYIQDRSGGSVEQLGEKVQAFVEAASKRPEL 709

Query: 181  IQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                      + Q   + D ++ R L  + + +                       +D  
Sbjct: 710  AGVQSTFSANVPQYYIDLDRTKTRALGVSVSDVFTAMQATF----------GSYYVNDFT 759

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             Y    +V +                    V +            + R            
Sbjct: 760  LYGRTWQVSLQSESQFR-----RKPEDLGQVYVRSSSGDLVPLSTLLRVRRILGPDSYDR 814

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              V  +  +      G +       ++               I     E    G+     
Sbjct: 815  FNVYPSAKVLGGPAPGYSSGQALAAMQEVADEVLGEDYSLGWIGSAYQELATQGS----- 869

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                G  A V GL+L+ L +   Y      L    ++   V   +  + L G    +   
Sbjct: 870  ----GAQAFVFGLILVFLILAAQYERWTLPLAVVTAVPFAVFGAILAVWLRGIQNDVYFQ 925

Query: 418  AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             G+V  IGLA  + IL+ E       + + +F +        +  I  +++  ++  V L
Sbjct: 926  VGLVTLIGLAAKNAILIVEFAVLLRAEGKGIFEAAQEAAKLRFRPIVMTSLAFILGCVPL 985

Query: 478  FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
                  G  +       +   +L +   A  ++    + 
Sbjct: 986  AISSGAGSASRHSIGTGVIGGMLAATLLATFLIPMFYLL 1024


>gi|206900440|ref|YP_002251310.1| protein-export membrane protein SecF [Dictyoglomus thermophilum
           H-6-12]
 gi|206739543|gb|ACI18601.1| protein-export membrane protein SecF [Dictyoglomus thermophilum
           H-6-12]
          Length = 290

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 84/291 (28%), Positives = 153/291 (52%), Gaps = 5/291 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           I     + R   + +S++F I  I   FT GLNY IDF+ G  +    + P+  S + + 
Sbjct: 5   INFLGKKVRRTFMLLSLIFIIVGIYFFFTKGLNYSIDFQSGSVVYYKLSSPLSTSQISTL 64

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            +  +          G     V ++ +  +     ++   V++ +         +    +
Sbjct: 65  RDIAKRFYDKSTIQTGSNGKEVWIRTKFLEEDELKKLTSEVERVV----GKYEGREITTI 120

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
            P IS+EL  K I+  +++ I ML+YI IRF++ FA+ AI      +  T+  FA+   E
Sbjct: 121 EPTISKELREKAILASVLAIIVMLVYITIRFRFDFAISAIINEAFVLLATISIFAISQWE 180

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + + +AA+LTL+GY++ND ++V+DR+R+N+K Y     F  L ++SIN+TL R++YT +
Sbjct: 181 VSPSFIAAILTLLGYAINDNIIVFDRIRENLKKYPK-EDFTVLANRSINQTLARTIYTIL 239

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              +++ P+  WGG V+  F + +  GI++   S+I+IA+ IL    + + 
Sbjct: 240 TTLLAITPLLFWGGVVLRPFILAIYLGIIIGTYSTIYIASAILCEWRELQK 290



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 89/264 (33%), Gaps = 4/264 (1%)

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
           +      +   T      I F       +   +  +  +   +    +        Q   
Sbjct: 22  IFIIVGIYFFFTKGLNYSIDFQSGSVVYYKLSSPLSTSQISTLRDIAKRFYDKSTIQTGS 81

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
           +GK        +E   +         +  K    E   +   +  +   K   A V  ++
Sbjct: 82  NGKEVWIRTKFLEEDELKKLTSEVERVVGKYEGREITTIEPTISKELREKAILASVLAII 141

Query: 374 LIVLFMIVLYGK-WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           ++++++ + +   + + A  +    ++ T+++ ++    ++   IA I+  +G A++ NI
Sbjct: 142 VMLVYITIRFRFDFAISAIINEAFVLLATISIFAISQWEVSPSFIAAILTLLGYAINDNI 201

Query: 433 LVNERIREENRKNQSVFC---SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +V +RIRE  +K         +          TI+    T L  T +LF+ G        
Sbjct: 202 IVFDRIRENLKKYPKEDFTVLANRSINQTLARTIYTILTTLLAITPLLFWGGVVLRPFIL 261

Query: 490 ITMGLSILISMFTAISIVRAMMIF 513
                 I+ +  T       +  +
Sbjct: 262 AIYLGIIIGTYSTIYIASAILCEW 285


>gi|78485873|ref|YP_391798.1| hydrophobe/amphiphile efflux-1 HAE1 [Thiomicrospira crunogena
           XCL-2]
 gi|78364159|gb|ABB42124.1| Resistance-Nodulation-Cell Division (RND) superfamily cation efflux
           transporter [Thiomicrospira crunogena XCL-2]
          Length = 1049

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 82/687 (11%), Positives = 193/687 (28%), Gaps = 49/687 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G +  +        + +FP+  P               + +    
Sbjct: 20  RPVFAWVIAFLVMIAGAISVV-----SLPIAQFPAIAPP-------------SITITATY 61

Query: 63  DDFVNGFLQMYSDELR----SFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                  ++    ++       L        +     Q  ITLSF      +    ++  
Sbjct: 62  PGASAKTIEDTVTQIIETKMKGLDGLMYMSSTSESTGQANITLSFKTGTDPDIAQMQIQN 121

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    +K  +      +  +++          +AI+    I    IDQI   
Sbjct: 122 KLQTAMSSLPEAVQKQGIQVVKSVKNFLMVIGFISPDKSLNAIDLGDYIATHVIDQISRV 181

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     +        +    DP +L +     A +       N        G     ++ 
Sbjct: 182 DGVGDVVQFSS-EYAMRIWVDPYKLAKYNLVPADVVNAIKANNAVVTAGQLGAVPAVENQ 240

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +               T +    +                 +       
Sbjct: 241 PINVTVNLQSRL-------------KTTDEFKNVVIKTAQDGATIKVSDVARVEVGADTY 287

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +   T +        L          +           
Sbjct: 288 TKLARYKGAPAAGFAVKLASNANALETGDRVIKRMEELSQFFPAGMDYVNAYDTTPFIKL 347

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++++++ +   +  L+   ++ + ++ T  +LS  G ++   ++
Sbjct: 348 SIEGVIQTLVEAIILVVLIMYLFLGNLRATLIPTITVPVVLLGTFGVLSYFGYSINTLTM 407

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475
             +VL IGL VD  I+V E +    + +N     +     ++     I    + + +   
Sbjct: 408 FAMVLAIGLLVDDAIVVVENVERVMHEENLPAKEATRRSMNQISGALIGIGLVLSAVFLP 467

Query: 476 VLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G  G   + FA+T+  ++++S+  A  +  A+   I++    ++        F  
Sbjct: 468 MAFFPGSAGVIYQQFAVTIVSAMVLSVMAAFILTPALCATILKPVDKEAESKGFFGWFNR 527

Query: 534 IPDCIA-------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLA 585
             D  +          ++ RF   G+ I        L       +  +   G     V+ 
Sbjct: 528 NFDRASNGYGKSVRSIIKHRFAFFGLYIAIVAAVGFLYHKTPAGFLPNEDQGFMFSQVMM 587

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                     + ++ L+   ++ +  + E  F V      G           +K      
Sbjct: 588 PSGATREDTLAVVKKLENHFLNTEKDNIEGLFTVLGFNFSGTGQNTAIAFVRLKDWSERT 647

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVG 672
            P  ++Q           ++    +  
Sbjct: 648 EPSQSVQAIIGRAMGTFSQIKEAMVFA 674



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 87/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + +S V              +                 +++     +    +++++  P 
Sbjct: 272 IKVSDVARVEVGADTYTKLARYKGAPAAGFAVKLASNANALETGDRVIKRMEELSQFFPA 331

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   I  ++ + I +++ +++        L    T+ + +  T
Sbjct: 332 GMDYVNAYDTTPFIKLSIEGVIQTLVEAIILVVLIMYLFLGNLRATLIPTITVPVVLLGT 391

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  + FG   N   + A++  IG  V+D +VV + +     ++  ++  ++   +S+N+
Sbjct: 392 FGVLSYFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEENLPAKEATRRSMNQ 449

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +   +      LPMA + G   VI   FA+ +   +V++  ++  +   +
Sbjct: 450 ISGALIGIGLVLSAVFLPMAFFPGSAGVIYQQFAVTIVSAMVLSVMAAFILTPAL 504



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 78/227 (34%), Gaps = 9/227 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G+    V     P  S  Q         K                      +    
Sbjct: 825  ERYNGQPALEVLGMSPPSVSSGQAMETVEALSKKLPKGTSIEWTGLSYEEKAAGDKASLL 884

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             I+ +++  +A+     +   W   +  +  + L I  TL    L G   ++     +LT
Sbjct: 885  YILSILVVFLALA---ALYESWSLPISVMLIVPLGILGTLVAAFLTGKPSDIYFQVGLLT 941

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            ++G +  + +++ +  ++   L    +   +   ++    L   + TS+A    VLP+A+
Sbjct: 942  IVGLATKNAILIVEFSKE---LVEDGMDIVEASIRAARMRLRPILMTSLAFGFGVLPLAL 998

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G     +    +  G++ A +  IF      + +  W  K  +
Sbjct: 999  SSGAGSGAHNAIGTGVLGGMISATALGIFFVPMFFVIVEHWFIKKVK 1045


>gi|315022094|gb|EFT35123.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Riemerella anatipestifer RA-YM]
 gi|325335959|gb|ADZ12233.1| Cation/multidrug efflux pump [Riemerella anatipestifer RA-GD]
          Length = 1055

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 73/540 (13%), Positives = 158/540 (29%), Gaps = 41/540 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  +G+L  L        + +FPS  P               + +  +
Sbjct: 7   KRPVLSIVISLIIVFLGVLSLL-----SLPITQFPSISPPK-------------VNITAE 48

Query: 62  EDDFVNGF-LQMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N   ++     L   L    G+   +     +    I + F         A  V 
Sbjct: 49  YPGANNELLVKSVVIPLEQALNGVQGMKYITSDAGNDGVASIQVVFNLGTDPNLAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL     +  +  T E+   ++      D   +             + ++  
Sbjct: 109 NRVSSAINKLPPLVVREGVKITREEPNMLMYVNLYSDDPKADQKFLFNYADINILPELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P RL     +T ++       +        G    + S
Sbjct: 169 VNGVGFADILGTREYAMRIWLKPDRLTAYNISTDEVMEALSSQSLEASPGRTGESSGKRS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++                           I                ++    ++
Sbjct: 229 QAFEYVLKYPGRFDNE-------------KDYGNIIVKANSNGEFVRLKDVADVEFGSSM 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG-SLPIKLNIVEERNVGAD 355
                 L                + +  I+    L   L            +        
Sbjct: 276 YDIYSTLNGKPSAAITIKQSYGSNASEVIKNVKTLLEELNKTSFPKGMHYEISYDVSRFL 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV IV+F+ +   +  L+   ++ +++I   A++S  G T+ + 
Sbjct: 336 DASMEKVVHTLFEAFVLVGIVVFIFLGDWRSTLIPALAVPVSLIGAFAVMSSFGITVNMI 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +V+ IG+ VD  I+V E +  +  +   S   +           I    +      
Sbjct: 396 TLFALVMAIGVVVDDAIVVIEAVHAKMEEKHLSPLEATQEAMGEISGAIIAITLVMAAVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F  G      R F+ITM  SI++S   A+++  A+   I++    K     P++RF
Sbjct: 456 IPVAFMSGPVGVFYRQFSITMASSIILSGIVALTLTPALCALILKNNHGKERKKTPINRF 515



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 83/249 (33%), Gaps = 13/249 (5%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V      S      S  N        ++  Y    S     V  ++++      P    
Sbjct: 265 DVADVEFGSSMYDIYSTLNGKPSAAITIKQSYGSNASEVIKNVKTLLEELNKTSFPKGMH 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
                   +     + K +  +  + + + I ++I    W   L     + + +      
Sbjct: 325 YEISYDVSRFLDASMEKVVHTLFEAFVLVGIVVFIFLGDWRSTLIPALAVPVSLIGAFAV 384

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            + FGI  N+  + A++  IG  V+D +VV + +    K+    +S  +   +++ E  G
Sbjct: 385 MSSFGITVNMITLFALVMAIGVVVDDAIVVIEAVH--AKMEEKHLSPLEATQEAMGEISG 442

Query: 771 RSVYTSMAAFISVLPMA--VWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPI-LLFI 823
             +       +         +    +      F+I MA  I+++   ++ +   +  L +
Sbjct: 443 AII---AITLVMAAVFIPVAFMSGPVGVFYRQFSITMASSIILSGIVALTLTPALCALIL 499

Query: 824 YDWRAKNAR 832
            +   K  +
Sbjct: 500 KNNHGKERK 508



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 80/250 (32%), Gaps = 10/250 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +               +    Q     ++        + I E   
Sbjct: 790  YVKNDKEEMVPYSDFMHMEKVYGMSEITRHNMYNSAQISGYPSEGYSSGQAIEAIKETAD 849

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWI---RFKWYFALGAITTLILD 703
             +  +   I    IS++ + +G   V I  I +  +Y+ +      +   L  I  L   
Sbjct: 850  KTLPRGYGIDWAGISKDEVGRGNEAVYIFLICLGFVYLILSAQYESFILPLPVILCLPAG 909

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I     F  LFG+E N+ A  A++ LIG    + V++ +     ++      +      +
Sbjct: 910  IFGAFLFLKLFGLENNIYAQVALVMLIGLLGKNAVLIVE---YAVQRKNEGATILKAAIE 966

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    ++P+A+  G   I   +     A G+ +     + +   + 
Sbjct: 967  GAVTRFRPILMTSFAFIAGLIPLALATGPGAIGNRTIGTAAAGGMFIGTIFGVVLIPGLY 1026

Query: 821  LFIYDWRAKN 830
            L       KN
Sbjct: 1027 LIFGKIARKN 1036


>gi|262394665|ref|YP_003286519.1| acridine efflux pump [Vibrio sp. Ex25]
 gi|262338259|gb|ACY52054.1| acridine efflux pump [Vibrio sp. Ex25]
          Length = 1053

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 72/690 (10%), Positives = 179/690 (25%), Gaps = 46/690 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G++           + ++P+  P             + + +    
Sbjct: 8   RPVFAWVLAILTMLAGVMSLF-----NLPVSQYPTISP-------------TTITISARY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGASAKTVEDSVTQVIEQNMTGLDYLRYLSSSSDAFGNATITLTFDSEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L ++ +   +V        +++     +       +    ++    D I   
Sbjct: 110 KLQLALTSLPMEVQNQGIVVNKSNTAFLMVVAVYSEDPDFTENDIGDFVVTNIQDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP +L Q   T   ++      N        G    ++  
Sbjct: 170 TGVGQVQAFGAQ-YAMRVWLDPFKLTQFNLTAIDVANAISEQNAQVSSGQLGAAPAQEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S +              +    I   +      +      + +     
Sbjct: 229 LLNATISSASRLSSVE-------------EFQNIILKSDASGSNVYLKDVARVERGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    S     +   T          L A                    
Sbjct: 276 DIRGQYNGFPASGLGISLGTGANALETANAVKERLEQLSATFPEGLQIAYPFETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  ++   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIQEVVKTLLEAILLVFLIMYLFLQNFRATIIPTIAVPVVLLGTFAILYATGFSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +        +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEDGLEPKEATKKSMGQITGALIGVGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPL 528
           + F  G      R F+IT+  ++ +S+  AI +  A+   +++         K       
Sbjct: 456 MAFMSGSTGVIYRQFSITIVAAMTLSVLVAIILTPALCATLLKKGDAELLEKKGFFGWFN 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +F  +         +       + ++F   S    +              Q  V +   
Sbjct: 516 RKFDAMTAGYETGVAKLLKRTGRMLVVFLAMSAGAGWLFMNLPTSFLPDEDQGTVFSMAI 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +  +  +   E        F   D + N              Q + + M    + +    
Sbjct: 576 LPPNSTQEQTEKTLEKMRDFYLVDEKDNVKSVFSVAGFSFAGQGQNMGMAFIGLKDWSER 635

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAI 678
                        +          ++ +  
Sbjct: 636 EAPGADAASITGRAMGYFSTIKEALVFAFA 665



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 87/246 (35%), Gaps = 6/246 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +   V L  V       +  DI  Q      + L        +++     ++   ++++ 
Sbjct: 256 SGSNVYLKDVARVERGAESYDIRGQYNGFPASGLGISLGTGANALETANAVKERLEQLSA 315

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
             P               +  I++ +  ++ + + + + +++  + +   +     + + 
Sbjct: 316 TFPEGLQIAYPFETTPFVKASIQEVVKTLLEAILLVFLIMYLFLQNFRATIIPTIAVPVV 375

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T       G   N   + A++  IG  V+D +VV + +     ++   +  ++   K
Sbjct: 376 LLGTFAILYATGFSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEDGLEPKEATKK 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
           S+ +  G  +   +      +PMA   GS       F+I +   + ++   +I +   + 
Sbjct: 434 SMGQITGALIGVGLTLSAVFVPMAFMSGSTGVIYRQFSITIVAAMTLSVLVAIILTPALC 493

Query: 821 LFIYDW 826
             +   
Sbjct: 494 ATLLKK 499



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 75/249 (30%), Gaps = 7/249 (2%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            +      Y +  K      V  ++   +            G    Q FDG     ++   
Sbjct: 769  MMQSDAEYRMQPKDFDSWYVRNSKGEMVPFSAFASGEWTYGSPLLQRFDGLPAMNIQGGA 828

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
             PG S  +         +                      +      + +++     L+ 
Sbjct: 829  APGVSTGEAMAEIEAMVEKLPEGFTVNWNGISYEERLSGNQAPMLYALSILVVF---LVL 885

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +   W      +  + L +   +       ++ ++    ++LT +G +  + +++ + 
Sbjct: 886  AALYESWSVPFAVVLVVPLGVLGAVLAVMTRSMDNDVFFQVSLLTTVGLATKNAILIVEF 945

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
             +     Y       +    ++   L   + TS+A  + V+P+A+  G         +  
Sbjct: 946  AKDY---YEKGAGLIEATLHAVRVRLRPIIMTSLAFGLGVVPLAISSGVGSAGQN-AVGT 1001

Query: 804  GIVVAASSS 812
            G++    S+
Sbjct: 1002 GVLGGMISA 1010


>gi|326577592|gb|EGE27469.1| RND system efflux pump AcrB [Moraxella catarrhalis O35E]
          Length = 1051

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 205/689 (29%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P   P               + +    
Sbjct: 8   RPIFAWVIAILIMLVGILAI-----NNLPIEQYPKIAPP-------------QVKVRAVY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S       +TL+F +    +    +V  
Sbjct: 50  PGADAETVENSVTQIIEQQMKGIDGLMYMSSNSSAAGSASVTLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  L         ++++    +       + +  +    +D I   
Sbjct: 110 KLQSAMSSLPETVQRTGLNVEKSASDFLMVTAFVSEDGSMDQSDIADYVATSIVDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++LR      + +S      N        G        
Sbjct: 170 EGVGGTNVFGS-SYAMRIWLDPAKLRAYNLIPSDVSSAIRSQNVQVSAGQLGTLPTNTDR 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                         I+   +  ++     +    +   +    +        +       
Sbjct: 229 VV------------INATVSVQSYLQTPEQFEDILLKTDTAGAQVRIKDVARVELGSENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +     E  G+    L          +V          
Sbjct: 277 QFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELSQNFPTGLKMVVPYDTTPFVRL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   +  ++   ++ + ++ T A+LS+ G ++ + ++
Sbjct: 337 SITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPVVILGTFAVLSVFGYSINILTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             +VL IGL VD  I+V E +     +N S   +  ++      +   I  + I +++  
Sbjct: 397 FAMVLAIGLLVDDAIIVVENVERILEENPSIQVMDATIQSMREISKVVIGIALILSVVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------S 522
            ++FF G      R FA+T+  S+++S F A+    A+ + I++ +  K           
Sbjct: 457 PMIFFGGSSGVIYRQFAVTLMTSMVLSAFIALVFTPALCVTILKRQAHKDINIQTGFFGW 516

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + I   +     +    + + ++ ++  +         + +G +   
Sbjct: 517 FNRFFYQTSRRYENFIGKTYASKLAYLAVYTGIVAVMALIFMRLPSSFVPEEDQGAVMTL 576

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       L    + ++ L       +  + E  F +      G           +K   
Sbjct: 577 VQLPAGSTLDKTNAVMDKLANYYHDKETDNIESVFTISGFGFMGSGQNSGMAFIKLKDWD 636

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +T Q+       ++  +    ++
Sbjct: 637 ERAGSENTAQSIARRAMVMNMMIPEASLI 665



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 94/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V +  V       +      Q      + L  +     +++     + +   +++
Sbjct: 256 TAGAQVRIKDVARVELGSENYQFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               R  I + +  ++ + + + + +++  + W   +     + +
Sbjct: 316 QNFPTGLKMVVPYDTTPFVRLSITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T    ++FG   N+  + A++  IG  V+D ++V + + + +     SI   D   
Sbjct: 376 VILGTFAVLSVFGYSINILTMFAMVLAIGLLVDDAIIVVENV-ERILEENPSIQVMDATI 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     +  ++   +  +PM  +GGS       FA+ +   +V++A  ++     +
Sbjct: 435 QSMREISKVVIGIALILSVVFVPMIFFGGSSGVIYRQFAVTLMTSMVLSAFIALVFTPAL 494

Query: 820 LLFIYDWR 827
            + I   +
Sbjct: 495 CVTILKRQ 502



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 68/169 (40%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   +S + + + +   ++ W      I  + L +  +L    + G+  ++    A+
Sbjct: 873  QAPILYALSILVVFLCLAALYESWSVPFAVILVIPLGVIGSLLLTKIHGLANDVYLQVAL 932

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT+IG S  + +++ +  ++   +  +  + +  I  +    L   + TS+A  + V+P+
Sbjct: 933  LTVIGLSAKNAILIIEFAKE---IQESGQTLKASIMMAARMRLRPIIMTSLAFGVGVVPL 989

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +    G     +    +  G++ +    IF      +++        +
Sbjct: 990  YIATGAGSGSQNAVGTGVLGGVLTSTFLGIFFIPMFYVWVRTLFPYKPK 1038


>gi|326566819|gb|EGE16958.1| RND system efflux pump AcrB [Moraxella catarrhalis 103P14B1]
          Length = 1051

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 205/689 (29%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P   P               + +    
Sbjct: 8   RPIFAWVIAILIMLVGILAI-----NNLPIEQYPKIAPP-------------QVKVRAVY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S       +TL+F +    +    +V  
Sbjct: 50  PGADAETVENSVTQIIEQQMKGIDGLMYMSSNSSAAGSASVTLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  L         ++++    +       + +  +    +D I   
Sbjct: 110 KLQSAMSSLPETVQRTGLNVEKSASDFLMVTAFVSEDGSMDQSDIADYVATSIVDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++LR      + +S      N        G        
Sbjct: 170 EGVGGTNVFGS-SYAMRIWLDPAKLRAYNLIPSDVSSAIRSQNVQVSAGQLGTLPTNTDR 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                         I+   +  ++     +    +   +    +        +       
Sbjct: 229 VV------------INATISVQSYLQTPEQFEDILLKTDTAGAQVRIKDVARVELGSENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +     E  G+    L          +V          
Sbjct: 277 QFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELSQNFPTGLKMVVPYDTTPFVRL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   +  ++   ++ + ++ T A+LS+ G ++ + ++
Sbjct: 337 SITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPVVILGTFAVLSVFGYSINILTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             +VL IGL VD  I+V E +     +N S   +  ++      +   I  + I +++  
Sbjct: 397 FAMVLAIGLLVDDAIIVVENVERILEENPSIQVMDATIQSMREISKVVIGIALILSVVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------S 522
            ++FF G      R FA+T+  S+++S F A+    A+ + I++ +  K           
Sbjct: 457 PMIFFGGSSGVIYRQFAVTLMTSMVLSAFIALVFTPALCVTILKRQAHKDINIQTGFFGW 516

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + I   +     +    + + ++ ++  +         + +G +   
Sbjct: 517 FNRFFYQTSRRYENFIGKTYASKLAYLAVYTGIVAVMALIFMRLPSSFVPEEDQGAVMTL 576

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       L    + ++ L       +  + E  F +      G           +K   
Sbjct: 577 VQLPAGSTLDKTNAVMDKLANYYHDKETDNIESVFTISGFGFMGSGQNSGMAFIKLKDWD 636

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +T Q+       ++  +    ++
Sbjct: 637 ERAGSENTAQSIARRAMVMNMMIPEASLI 665



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 94/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V +  V       +      Q      + L  +     +++     + +   +++
Sbjct: 256 TAGAQVRIKDVARVELGSENYQFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               R  I + +  ++ + + + + +++  + W   +     + +
Sbjct: 316 QNFPTGLKMVVPYDTTPFVRLSITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T    ++FG   N+  + A++  IG  V+D ++V + + + +     SI   D   
Sbjct: 376 VILGTFAVLSVFGYSINILTMFAMVLAIGLLVDDAIIVVENV-ERILEENPSIQVMDATI 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     +  ++   +  +PM  +GGS       FA+ +   +V++A  ++     +
Sbjct: 435 QSMREISKVVIGIALILSVVFVPMIFFGGSSGVIYRQFAVTLMTSMVLSAFIALVFTPAL 494

Query: 820 LLFIYDWR 827
            + I   +
Sbjct: 495 CVTILKRQ 502



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 68/169 (40%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   +S + + + +   ++ W      I  + L +  +L    + G+  ++    A+
Sbjct: 873  QAPILYALSILVVFLCLAALYESWSVPFAVILVIPLGVIGSLLLTKIHGLANDVYLQVAL 932

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT+IG S  + +++ +  ++   +  +  + +  I  +    L   + TS+A  + V+P+
Sbjct: 933  LTVIGLSAKNAILIIEFAKE---IQESGQTLKASIMMAARMRLRPIIMTSLAFGVGVVPL 989

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +    G     +    +  G++ +    IF      +++        +
Sbjct: 990  YIATGAGSGSQNAVGTGVLGGVLTSTFLGIFFIPMFYVWVRTLFPYKPK 1038


>gi|296112702|ref|YP_003626640.1| RND system efflux pump AcrB [Moraxella catarrhalis RH4]
 gi|295920396|gb|ADG60747.1| RND system efflux pump AcrB [Moraxella catarrhalis RH4]
          Length = 1051

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 205/689 (29%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P   P               + +    
Sbjct: 8   RPIFAWVIAILIMLVGILAI-----NNLPIEQYPKIAPP-------------QVKVRAVY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S       +TL+F +    +    +V  
Sbjct: 50  PGADAETVENSVTQIIEQQMKGIDGLMYMSSNSSAAGSASVTLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  L         ++++    +       + +  +    +D I   
Sbjct: 110 KLQSAMSSLPETVQRTGLNVEKSASDFLMVTAFVSEDGSMDQSDIADYVATSIVDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++LR      + +S      N        G        
Sbjct: 170 EGVGGTNVFGS-SYAMRIWLDPAKLRAYNLIPSDVSSAIRSQNVQVSAGQLGTLPTNTDR 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                         I+   +  ++     +    +   +    +        +       
Sbjct: 229 VV------------INATISVQSYLQTPEQFEDILLKTDTAGAQVRIKDVARVELGSENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +     E  G+    L          +V          
Sbjct: 277 QFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELSQNFPTGLKMVVPYDTTPFVRL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   +  ++   ++ + ++ T A+LS+ G ++ + ++
Sbjct: 337 SITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPVVILGTFAVLSVFGYSINILTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             +VL IGL VD  I+V E +     +N S   +  ++      +   I  + I +++  
Sbjct: 397 FAMVLAIGLLVDDAIIVVENVERILEENPSIQVMDATIQSMREISKVVIGIALILSVVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------S 522
            ++FF G      R FA+T+  S+++S F A+    A+ + I++ +  K           
Sbjct: 457 PMIFFGGSSGVIYRQFAVTLMTSMVLSAFIALVFTPALCVTILKRQAHKDINIQTGFFGW 516

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + I   +     +    + + ++ ++  +         + +G +   
Sbjct: 517 FNRFFYQTSRRYENFIGKTYASKLAYLAVYTGIVAVMALIFMRLPSSFVPEEDQGAVMTL 576

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       L    + ++ L       +  + E  F +      G           +K   
Sbjct: 577 VQLPAGSTLDKTNAVMDKLANYYHDKETDNIESVFTISGFGFMGSGQNSGMAFIKLKDWD 636

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +T Q+       ++  +    ++
Sbjct: 637 ERAGSENTAQSIARRAMVMNMMIPEASLI 665



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 94/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V +  V       +      Q      + L  +     +++     + +   +++
Sbjct: 256 TAGAQVRIKDVARVELGSENYQFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               R  I + +  ++ + + + + +++  + W   +     + +
Sbjct: 316 QNFPTGLKMVVPYDTTPFVRLSITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T    ++FG   N+  + A++  IG  V+D ++V + + + +     SI   D   
Sbjct: 376 VILGTFAVLSVFGYSINILTMFAMVLAIGLLVDDAIIVVENV-ERILEENPSIQVMDATI 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     +  ++   +  +PM  +GGS       FA+ +   +V++A  ++     +
Sbjct: 435 QSMREISKVVIGIALILSVVFVPMIFFGGSSGVIYRQFAVTLMTSMVLSAFIALVFTPAL 494

Query: 820 LLFIYDWR 827
            + I   +
Sbjct: 495 CVTILKRQ 502



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 87/267 (32%), Gaps = 9/267 (3%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
             N  +  +   +  V       +S    +    + G  S   ++G  + ++      G S
Sbjct: 778  PNSRVVPEDINRWYVRNQSGEMVSFGAFSGSQWEYGSPSLARYNGVSSMVLTGSAALGVS 837

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                                       +   K   +      + +++  + +     +  
Sbjct: 838  TGDAMEAMAQMASQLPAGIDFEWTGLSLEQQKSGGQAPILYALSILVVFLCLA---ALYE 894

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      I  + L +  +L    + G+  ++    A+LT+IG S  + +++ +  ++  
Sbjct: 895  SWSVPFAVILVIPLGVIGSLLLTKIHGLANDVYLQVALLTVIGLSAKNAILIIEFAKE-- 952

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             +  +  + +  I  +    L   + TS+A  + V+P+ +    G     +    +  G+
Sbjct: 953  -IQESGQTLKASIMMAARMRLRPIIMTSLAFGVGVVPLYIATGAGSGSQNAVGTGVLGGV 1011

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + +    IF      +++        +
Sbjct: 1012 LTSTFLGIFFIPMFYVWVRTLFPYKPK 1038


>gi|223040441|ref|ZP_03610715.1| protein-export membrane protein SecD [Campylobacter rectus RM3267]
 gi|222878291|gb|EEF13398.1| protein-export membrane protein SecD [Campylobacter rectus RM3267]
          Length = 526

 Score =  187 bits (473), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 174/540 (32%), Positives = 290/540 (53%), Gaps = 35/540 (6%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           + +I++S+    G++ ++P+F                +ISLGLDL+GG H++L V+ ++ 
Sbjct: 8   YRLIIFSLALIFGIIFSVPSFFQTEKGA---------KISLGLDLQGGLHMLLGVETEEA 58

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V+  ++  +  +  F KKE + + S +  ++K+     D+     I   +          
Sbjct: 59  VHSKIKSIAASVNYFAKKEDVLIDSFKIREDKVDFELLDADEAAKIDGMLKDI------- 111

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                 K L V     + S+ L+     + I +AI Q++E IR R+DQ G++E T+ R G
Sbjct: 112 ------KGLDVQKDGLKYSVGLTDAEKAETIEYAINQAVETIRNRLDQFGLAEPTVARQG 165

Query: 186 SHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------- 235
              IL++LPG +   D  R R L+   A +    V      +                  
Sbjct: 166 KDNILVELPGIKTVADEQRARDLIAKAAHLQLMAVDEKRQSQAGSMSKAEAESYGDIIYP 225

Query: 236 ---SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
              ++  +Y+V++   + G  L  A   FD +T+ P++  + +  GAR F + T  N+GK
Sbjct: 226 DVKNEQIKYIVKNVPVLDGAMLTDARVAFDQRTNSPIISFTLNAEGARIFGDFTGANVGK 285

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            LA+VLDG+V +AP IN+ I  G  QISG F++E A  +A  LR+G+L   + ++E+R++
Sbjct: 286 RLAIVLDGKVYSAPSINERIGGGSGQISGGFSVEEAHDVAIALRSGALLAPVKMLEKRSI 345

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG+DSI +   A+ +  VL+VLFMI  YG  G++A+ ++  N+++ +A++++ GA L
Sbjct: 346 GPSLGADSINQSMIALASASVLVVLFMIAYYGFSGILANIALTANILILVAVMAMFGAAL 405

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP +AGIVL IG+AVD+N+++NERIRE  R    +  S+  G+  A S I D+N+T LI
Sbjct: 406 TLPGMAGIVLTIGMAVDANVIINERIRELLRDGVGIATSVKRGYENAMSAIIDANLTTLI 465

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +VVL+ +G G V+GFA+TMG+ I+ SM TAI     M   ++   +             
Sbjct: 466 TSVVLYAYGTGPVKGFAVTMGIGIIASMITAILGTHGMFDTVVNKIEKSGNTRFWFGYKR 525



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 75/158 (47%), Gaps = 4/158 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + I + ++ +  +++ +++++   + +   + A   L  +I   +   A+FG
Sbjct: 344 SIGPSLGADSINQSMIALASASVLVVLFMIAYYGFS-GILANIALTANILILVAVMAMFG 402

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++ +R+R+ ++     +     + +     +   +  
Sbjct: 403 AALTLPGMAGIVLTIGMAVDANVIINERIRELLRD---GVGIATSVKRGYENAMSAIIDA 459

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
           ++   I+ + +  +G   +  FA+ M  GI+ +  ++I
Sbjct: 460 NLTTLITSVVLYAYGTGPVKGFAVTMGIGIIASMITAI 497


>gi|157738361|ref|YP_001491045.1| AcrB/AcrD/AcrF family multidrug efflux protein [Arcobacter butzleri
           RM4018]
 gi|157700215|gb|ABV68375.1| multidrug efflux protein, AcrB/AcrD/AcrF family [Arcobacter
           butzleri RM4018]
          Length = 1041

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 78/640 (12%), Positives = 189/640 (29%), Gaps = 41/640 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++P   P  +I+                 
Sbjct: 9   RPIFAWVISLVIMIAGTVS-----LYTLPVEQYPDIAPP-QIN--------ISTTYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + L         S      +I+++F      +    +V   +  
Sbjct: 55  AETVENSVTQIIEQQLTGLDGMIYFSSSSSSTGNARISVTFQQGTDPDTAQVQVQNKVSA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L  D ++  +     +   ++L+    +   +  I+ +  ++    D I   +   
Sbjct: 115 ILSRLPEDVQRQGVRVVKSQTDFLLLASVYDETRKAQKIDIADYLVSNLQDSIARIDGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L       + +       N+       G     ++     
Sbjct: 175 EVQVYGGQ-YAMRIWLDPIKLESYNLMPSDIQSAINAQNSQASAGSLGALPTLENQQLSV 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +V  +                    +    I    +            +           
Sbjct: 234 IVTARS-------------KFKVVQEFENIIVKSNVDGSFVKIKDVAKVEIGSQSYNVVT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +       +  +   T        A   A             +      S   
Sbjct: 281 SLNGYPSSGIAIQLASGANAVKTANAIKDFLAKSEASLPEGYKIDYPRDSTLFIKASIKE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+ V+++ +   +  L+   ++ + ++ T  +L++LG ++   ++ G+V
Sbjct: 341 VVKTLFEAILLVIAVMYIFLKNYRATLIPAIAVPVVILGTFGILNILGYSINTLTMFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +     +N  S   +  +      S  I  + + +++   + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERNMSENNLSPKEATILSMQEITSALIGVATVLSVVFLPMAFF 460

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
            G      R F+IT+  S+++S+  A+++  A+   I            K        +F
Sbjct: 461 SGSTGVIYRQFSITIISSMVLSVVVALTLTPALCATILKPHKEQEESNKKGFIYWFTKKF 520

Query: 532 FLIPDCIAIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
             +         +            +  I  + + F       +  +    L V    PV
Sbjct: 521 EELTKRYKNILHKILESPKKYMFIYILIIGILAVFFMKLPTSFLPKEDQGSLMVRYTLPV 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                R+   +  I +          N +  +      + 
Sbjct: 581 GAVSSRTVDIAENIKNYFLTEEKNNVNSVFTISGISSQNS 620



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 76/196 (38%), Gaps = 12/196 (6%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            + A    L   +  + E   +   +++ +      +E+++     +++    M I++  
Sbjct: 303 TANAIKDFLAKSEASLPEGYKIDYPRDSTLFIKASIKEVVKTLFEAILLVIAVMYIFL-- 360

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +   L     + + I  T G   + G   N   +  ++  IG  V+D +VV + +  
Sbjct: 361 -KNYRATLIPAIAVPVVILGTFGILNILGYSINTLTMFGMVLSIGLLVDDAIVVVENV-- 417

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +   ++S ++    S+ E     +  +    +  LPMA + GS       F+I    
Sbjct: 418 ERNMSENNLSPKEATILSMQEITSALIGVATVLSVVFLPMAFFSGSTGVIYRQFSIT--- 474

Query: 804 GIVVAASSSIFIAAPI 819
            I+ +   S+ +A  +
Sbjct: 475 -IISSMVLSVVVALTL 489



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 60/157 (38%), Gaps = 6/157 (3%)

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALG 695
             ++ +I                 +E +  G  G++ +   ++I++    +   W     
Sbjct: 842 MDEMDKIADSQASGTMHAWSGASYQERLSSGQAGILYAISILVIFLCLAALYESWSVPFS 901

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + L +   +      G++ ++    A+LT IG    + +++ + +     LY   +
Sbjct: 902 ILMVIPLGVVGAVLAVYFRGLDNDVYFQVALLTTIGLVAKNAILIVEFV---DTLYKKGV 958

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
              +   K     L   V TS+A    ++P+A+  G+
Sbjct: 959 PLIEAAIKGATLRLRPIVMTSLAFIAGIIPLAISTGA 995


>gi|33602323|ref|NP_889883.1| putative efflux system transmembrane protein [Bordetella
           bronchiseptica RB50]
 gi|33576762|emb|CAE33840.1| putative efflux system transmembrane protein [Bordetella
           bronchiseptica RB50]
          Length = 1076

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 85/658 (12%), Positives = 177/658 (26%), Gaps = 48/658 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVALFILLTGILAI-----PNMPVSQYPDVAPPA-------------ITITATY 49

Query: 63  DDFV-NGFLQMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                    +  +  +   L   +G+  +        Q++IT +FA     +     V  
Sbjct: 50  PGASAKEVAESVTSIIEDQLNGAKGLLYYESVSDSYGQSQITATFAPGTDPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V ++L V   +  L         +++   +           +  I R   + +   
Sbjct: 110 RVSNVTAQLPVAVMQQGLQYEQTSAGFLMIVTLSSTDGTLDQTALADYITRNVKNPVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP +L     + A+++      N        G     DS 
Sbjct: 170 PGVGQFQLFAAPR-AMRIWVDPDKLVGFNLSMAEVNQAISQQNVLISAGSIGAPPNPDSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    ++S I                   +        +        I       
Sbjct: 229 RATATVIVNGQLSTIE-------------GFGQIVLRANTDGSKVLLRDVARIEVGADNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G  L                +   T E      A L           +          
Sbjct: 276 QFGARLNGKPTAAFAIVLSPDANALATAEGVRQQMASLSQYFPSNIRYDIPYDTAPYVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + + ++   A++  LG ++ + ++
Sbjct: 336 SIEQVIHTLVEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMLGAFAVMLALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +      +    I    +  +   + 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERIMASEGLSPKEATKKAMPQISGAIVGITLVLVTVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           L F  G      R F++ M +SI  S F A+S   A+   I          +K       
Sbjct: 456 LAFMTGSVGVIYRQFSVAMAVSIFFSAFLALSFTPALCATILKPIPKGHHQEKKGFFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    +            G  +     +  +       L      +      V   
Sbjct: 516 NRKFDATTHNYQNWVSRILHKGGRMMLAFALLVVLLGWLYMRLPSSFLPEEDQGYVVSNI 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                +     +E ++  +  F+N    +N +    Y    +     +     K  +E
Sbjct: 576 ELPTGASANRTIEVIEEVENYFRNIPAVENVITVQGYSFNGNGLNAAIAFTTLKDFSE 633



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +           +     +++A    +      +++  P +   
Sbjct: 264 DVARIEVGADNYQFGARLNGKPTAAFAIVLSPDANALATAEGVRQQMASLSQYFPSNIRY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +         +  I + I  ++ + + + + +++  +   + L     + + +       
Sbjct: 324 DIPYDTAPYVKVSIEQVIHTLVEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMLGAFAVM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  + A++  IG  V+D +VV + +     + +  +S ++   K++ +  G 
Sbjct: 384 LALGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERIMASEGLSPKEATKKAMPQISGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  ++      LP+A   GSV      F++ MA  I  +A  ++     +
Sbjct: 442 IVGITLVLVTVFLPLAFMTGSVGVIYRQFSVAMAVSIFFSAFLALSFTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 60/147 (40%), Gaps = 7/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  + L +   +    + G+  ++     ++T+IG +  + +++ +  +   
Sbjct: 891  SWAIPLSVMLVVPLGMLGAVALVTVLGMSNDVYFQVGMVTVIGLAAKNAILIVEFAKD-- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
              Y       +   ++        + TS+A  + V+P+A+    G +   +  I +  G+
Sbjct: 949  -QYARGQGLYESAVEAARLRFRPILMTSLAFILGVVPLAIATGAGAASQRAVGIGVLGGM 1007

Query: 806  VVAA-SSSIFIAAPILLFIYDWRAKNA 831
            + A   + IF+    ++ +  ++ +  
Sbjct: 1008 LAATPFAVIFVPTFFVVVLGLFKTRPR 1034


>gi|226940350|ref|YP_002795424.1| Cation/multidrug efflux pump [Laribacter hongkongensis HLHK9]
 gi|226715277|gb|ACO74415.1| Cation/multidrug efflux pump [Laribacter hongkongensis HLHK9]
          Length = 1056

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 80/673 (11%), Positives = 181/673 (26%), Gaps = 43/673 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +GLL      L    + ++P+  P               + +    
Sbjct: 11  RPVFAAVLSIIIAILGLL-----GLYSLPVQQYPNIAP-------------VQITVSASY 52

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                          +   +        +   S       I   F      +    +V  
Sbjct: 53  PGADAQTASQSVAAPIEQQIIGVDNLLYLTSSSSSSGNISIQAYFKQDADPDIAQVQVQN 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L     +  +         +++           A++ S  +    +D I   
Sbjct: 113 RVSLATPQLPSVVNQYGVTVNKRSSSILMVVNFYDPSGKMSALDLSNYVTMNVLDTIKRI 172

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP ++  L  TT  +       N        G        
Sbjct: 173 PGAGQASQFGSSNQAIRIWMDPRKMASLGVTTTDIKNAIASQNALVGAGQIGQEPSNSQV 232

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V                 F        + I   +             +       
Sbjct: 233 ELTIPVVA------------AGAFADPRVYENMVIRAAQGNNALVQVKDVARVELGQQNY 280

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +     +      +A  +     +        L+AG  P    +V          
Sbjct: 281 QGQNFVNGKPASTVAVYLQAGANSLEVADQVRATLKTLKAGFPPGMDYLVALDTTTYVRD 340

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LVL+++++ +   +   +A  +I ++++ +   L+LLG ++ L ++
Sbjct: 341 SISEVTKTLIEALALVLVIMYLFLQNLRATFIATIAIGVSLLGSFIGLALLGFSVNLLTL 400

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSV--FCSLDMGFSRAYSTIFDSNITALIATV 475
            G+VL IGL VD  I+V E +      N  +    +         S +F   +      +
Sbjct: 401 FGLVLAIGLVVDDAIVVIENVERVMHDNPDMPVREAAIESMREVSSAVFGMTLVLSSVFI 460

Query: 476 VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLS 529
              F     G   + FA T+   +++S  TA+++   +   +++  +  +          
Sbjct: 461 PALFMSGTTGELYKQFAATIAGGVIVSGITALTLTPTLCAMLLKRSEPHTRGPFAWFNNW 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L      +  +  R   V +  L  +          +      +        A    
Sbjct: 521 FARLTRGYGRLSHLVIRRSLVSVLFLGVMLLGVWQLFRIVPTSFVPQEDQGYLFAALMLP 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           + S +   +++    D   +     +   +   +   D   ++ V               
Sbjct: 581 ESSSMPRTIKAADQLDRIIRRNQAVEANTIIDGFSLLDGQNKSSVATAFINLKPSGERTK 640

Query: 650 TIQNTEIVGPKIS 662
             ++   V   I+
Sbjct: 641 PGESAFAVLEDIA 653



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 42/326 (12%), Positives = 98/326 (30%), Gaps = 6/326 (1%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           +   +  +KM S+ +        I    A+            S +     +         
Sbjct: 188 IRIWMDPRKMASLGVTTTDIKNAIASQNALVGAGQIGQEPSNSQVELTIPVVAAGAFADP 247

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
              +                  V R  L        +F N        V LQ        
Sbjct: 248 RVYENMVIRAAQGNNALVQVKDVARVELGQQNYQGQNFVNGKPASTVAVYLQAGANSLEV 307

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
             +V   +K       P             +   +       +I +   +L+ +++  + 
Sbjct: 308 ADQVRATLKTLKAGFPPGMDYLVALDTTTYVRDSISEVTKT-LIEALALVLVIMYLFLQN 366

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
                 A   + + +  +    AL G   NL  +  ++  IG  V+D +VV + + + + 
Sbjct: 367 LRATFIATIAIGVSLLGSFIGLALLGFSVNLLTLFGLVLAIGLVVDDAIVVIENV-ERVM 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIV 806
                +  R+   +S+ E        ++      +  + + G  G +   FA  +A G++
Sbjct: 426 HDNPDMPVREAAIESMREVSSAVFGMTLVLSSVFIPALFMSGTTGELYKQFAATIAGGVI 485

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           V+  +++ +   +   +      + R
Sbjct: 486 VSGITALTLTPTLCAMLLKRSEPHTR 511



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 75/257 (29%), Gaps = 11/257 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                 A   +       N        +  Q        +         S      LE V 
Sbjct: 789  LYTRTAQGNMVPLSSVVNSSFSSGPTVMSQYNGVPAANVTGTPASGYSSGEAIAALERVA 848

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
              +                           +    +  + + + + + F+ W      + 
Sbjct: 849  TDVLPASYSYGWAGLTYTEVSSGN----DSVFIFGLGLLMVFLILAVLFESWTLPTAVLA 904

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             +   +   L    L G++ ++     +L L+G +  + +++ +     ++L+    S  
Sbjct: 905  AVPFGLLGALLATWLRGLDNDVYMQIGLLVLVGLAAKNAILIVEFA---VQLHKDGKSLL 961

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFI 815
            +    +    L   + TS+A     LP+A+    G +   S    +  G++V +S ++  
Sbjct: 962  EAAVDAGELRLRAIIMTSLAFIFGTLPLALATGSGANARHSIGTGIVGGMIVLSSLALLF 1021

Query: 816  AAPILLFIYDWRAKNAR 832
                      WR    +
Sbjct: 1022 VPMFFYHFERWREGRQK 1038


>gi|326563949|gb|EGE14199.1| RND system efflux pump AcrB [Moraxella catarrhalis 12P80B1]
          Length = 1051

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 205/689 (29%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P   P               + +    
Sbjct: 8   RPIFAWVIAILIMLVGILAI-----NNLPIEQYPKIAPP-------------QVKVRAVY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S       +TL+F +    +    +V  
Sbjct: 50  PGADAETVENSVTQIIEQQMKGIDGLMYMSSNSSAAGSASVTLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  L         ++++    +       + +  +    +D I   
Sbjct: 110 KLQSAMSSLPETVQRTGLNVEKSASDFLMVTAFVSEDGSMDQSDIADYVATSIVDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++LR      + +S      N        G        
Sbjct: 170 EGVGGTNVFGS-SYAMRIWLDPAKLRAYNLIPSDVSSAIRSQNVQVSAGQLGTLPTNTDR 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                         I+   +  ++     +    +   +    +        +       
Sbjct: 229 VV------------INATVSVQSYLQTPEQFEDILLKTDTAGAQVRIKDVARVELGSENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +     E  G+    L          +V          
Sbjct: 277 QFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELSQNFPTGLKMVVPYDTTPFVRL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   +  ++   ++ + ++ T A+LS+ G ++ + ++
Sbjct: 337 SITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPVVILGTFAVLSVFGYSINILTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             +VL IGL VD  I+V E +     +N S   +  ++      +   I  + I +++  
Sbjct: 397 FAMVLAIGLLVDDAIIVVENVERILEENPSIQVMDATIQSMREISKVVIGIALILSVVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------S 522
            ++FF G      R FA+T+  S+++S F A+    A+ + I++ +  K           
Sbjct: 457 PMIFFGGSSGVIYRQFAVTLMTSMVLSAFIALVFTPALCVTILKRQAHKDINIQTGFFGW 516

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + I   +     +    + + ++ ++  +         + +G +   
Sbjct: 517 FNRFFYQTSRRYENFIGKTYASKLAYLAVYTGIVAVMALIFMRLPSSFVPEEDQGAVMTL 576

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       L    + ++ L       +  + E  F +      G           +K   
Sbjct: 577 VQLPAGSTLDKTNAVMDKLANYYHDKETDNIESVFTISGFGFMGSGQNSGMAFIKLKDWD 636

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +T Q+       ++  +    ++
Sbjct: 637 ERAGSENTAQSIARRAMVMNMMIPEASLI 665



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 94/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V +  V       +      Q      + L  +     +++     + +   +++
Sbjct: 256 TAGAQVRIKDVARVELGSENYQFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               R  I + +  ++ + + + + +++  + W   +     + +
Sbjct: 316 QNFPTGLKMVVPYDTTPFVRLSITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T    ++FG   N+  + A++  IG  V+D ++V + + + +     SI   D   
Sbjct: 376 VILGTFAVLSVFGYSINILTMFAMVLAIGLLVDDAIIVVENV-ERILEENPSIQVMDATI 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     +  ++   +  +PM  +GGS       FA+ +   +V++A  ++     +
Sbjct: 435 QSMREISKVVIGIALILSVVFVPMIFFGGSSGVIYRQFAVTLMTSMVLSAFIALVFTPAL 494

Query: 820 LLFIYDWR 827
            + I   +
Sbjct: 495 CVTILKRQ 502



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 68/169 (40%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   +S + + + +   ++ W      I  + L +  +L    + G+  ++    A+
Sbjct: 873  QAPILYALSILVVFLCLAALYESWSVPFAVILVIPLGVIGSLLLTKIHGLANDVYLQVAL 932

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT+IG S  + +++ +  ++   +  +  + +  I  +    L   + TS+A  + V+P+
Sbjct: 933  LTVIGLSAKNAILIIEFAKE---IQESGQTLKASIMMAARMRLRPIIMTSLAFGVGVVPL 989

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +    G     +    +  G++ +    IF      +++        +
Sbjct: 990  YIATGAGSGSQNAVGTGVLGGVLTSTFLGIFFIPMFYVWVRTLFPYKPK 1038


>gi|257093127|ref|YP_003166768.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257045651|gb|ACV34839.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 1068

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 80/684 (11%), Positives = 193/684 (28%), Gaps = 32/684 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++  +GL+      +      +FP+ +P  +I+                +
Sbjct: 8   RPIVAMVISILMTIVGLVA-----MSGLPTAQFPNIVPP-QIN--------VSSTYTGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVF-SMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  S +         +    Q+ + ++FA             +    
Sbjct: 54  ALTVEQAVATPIEQQMSGVDNMDYMYSINANNGQSTLYVNFALGTDANTDQLLAQMREGQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  D +   +         +++            I  +        DQ+   +   
Sbjct: 114 AESQLPSDVRNYGVTVAKSTSSPLIMFALYSPNGTYDNIFLANYAYININDQMTRVKGIA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L +L  T  ++       N        G   +       Y
Sbjct: 174 SVTVFGAGQYAMRMWVKPDQLAKLNITIPEIINAVNAQNTVNPAGTIGGEPVPAGQEFTY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +               T +    +                 I           
Sbjct: 234 AVRAQGRL-------------QSTEEFGNIVLRANPDGSIVRVQDVARIELGAQTYSQQG 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     + A  L   ++    P    ++      +     + 
Sbjct: 281 RLNGKPAALVALYQMPGANALDAADGAKKLMEKIKQSFPPDLDYVIALDTTLSVTEGITE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+IV+F+ +   +  L+   ++ ++++ T  L  + G ++   S+ G+V
Sbjct: 341 IKHTLFEALVLVMIVVFVFLQGWRATLIPLLAVPVSLVGTFMLFPMFGFSINTLSLFGLV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +        S   +           +    +      V   F  
Sbjct: 401 LAIGLVVDDAIVVVEAVEHHIEHGMSPKDATLRAMEEVTGPVIAIAVILAAVFVPTAFIP 460

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI-NPLSRFFLIPDC 537
              G   + FA+T+ +S++IS F A+++  A+   ++R K   S  I      F  +   
Sbjct: 461 GITGQLYQQFAVTIAISVIISAFNALTLSPALCAMLLRPKVKGSGPIQKFYDWFNGVFGR 520

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +   ++      +  S++  +  + +  + G    +   G +           + +  ++
Sbjct: 521 VTGGYVGICRIAIRRSLISLVFLVAVTASAGFFGKLVPAGFLPDEDQGYVFAAVQLPDAS 580

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
                    +       K   V+           ++V           +     +     
Sbjct: 581 SLQRTSEIAAQAEELIMKVPGVQYTTTVVGYSMLSQVTNTYSAFFFVTLKNWADRKQPEE 640

Query: 658 GPKISRELIRKGIVGVIISAIAML 681
                +  + K + G+  +     
Sbjct: 641 QYAAIKAELTKRLAGIPGAIAFAF 664



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 84/204 (41%), Gaps = 9/204 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               +++E +K+     +      +T +   +   E+       +++  I + +++    
Sbjct: 305 DGAKKLMEKIKQSFPPDLDYVIALDTTLSVTEGITEIKHTLFEALVLVMIVVFVFLQ--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T   F +FG   N  ++  ++  IG  V+D +VV + +    
Sbjct: 362 GWRATLIPLLAVPVSLVGTFMLFPMFGFSINTLSLFGLVLAIGLVVDDAIVVVEAV---E 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
                 +S +D   +++ E  G  +  ++      +P A      G +   FA+ +A  +
Sbjct: 419 HHIEHGMSPKDATLRAMEEVTGPVIAIAVILAAVFVPTAFIPGITGQLYQQFAVTIAISV 478

Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829
           +++A +++ ++  +   +   + K
Sbjct: 479 IISAFNALTLSPALCAMLLRPKVK 502



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 69/207 (33%), Gaps = 8/207 (3%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             S    R LE V  +                  K  + +    I     S + + + +  
Sbjct: 833  SSEQVMRALEAVFAETMPSEMGYDYMGMSFQEQKAQQGISPAVIF--GFSLLCVFLILAA 890

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +++ W      +    + +        L G E N+ A   ++ LIG +  + +++ +  +
Sbjct: 891  QYESWSLPFSVLLGTPIAVAGAFFALMLRGQELNVYAQIGLVMLIGLAAKNAILIVEFAK 950

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMA 802
               +     +S  +   K     L   + TS A  +  +P+A+  G   +        + 
Sbjct: 951  MEYEKGE--LSLAEATLKGAQLRLRPILMTSFAFILGCVPLAIASGAGALSRQVMGSAVI 1008

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++ A   +IFI       +     K
Sbjct: 1009 GGMLAATCLAIFIIPVTFFVVEKISHK 1035


>gi|157148845|ref|YP_001456164.1| hypothetical protein CKO_04678 [Citrobacter koseri ATCC BAA-895]
 gi|157086050|gb|ABV15728.1| hypothetical protein CKO_04678 [Citrobacter koseri ATCC BAA-895]
          Length = 1037

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 75/687 (10%), Positives = 183/687 (26%), Gaps = 51/687 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L  +     Q  + ++P+  P               + +    
Sbjct: 8   RPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPA-------------VAISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSSGSVTITLTFQSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    D       + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGISVEKSSSSFLLVAGFVSDNKNLTQDDISDYVASNVKDTISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D + L +   T   +       NN       G        
Sbjct: 170 SGVGDVQLFGAQ-YAMRIWLDSNALNKYQLTPLDVINQLKTQNNQIAAGQLGGTPSIPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      I       
Sbjct: 229 QLNASIIAQTRL-------------KTPEEFGRITLKVNQDGSMVHLKDVARIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +   T        A L+         +           
Sbjct: 276 NMVTKINGQAATGLGIKLATGANALDTAAAIKAKLAELQPFFPQGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAILAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +     S+    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMVEEKLPPKEATQKSMSQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F++T+  ++ +S+  A+ +  A+   +           +       
Sbjct: 456 MAFFGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCATLLKPASADHHEKKGGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + ++    +   + +   ++    +I  L         + +G     V
Sbjct: 516 NTLFEKSVGHYSNSVSGILRKTGRYLLLYVLIVGGMAILFLRLPTSFLPEEDQGVFMTMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +  +  L+ +Q   ++ +  + E  F V      G       V   +K    
Sbjct: 576 QLPAGATQTRTQQVLDQIQNYYLNQEKANVESVFTVNGFSFSGQGQNSGIVFISLKPWEE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGI 670
                + ++       +   ++    +
Sbjct: 636 RPGEENGVEAIVARATRAFSQIKDGLV 662



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 84/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  ++  +        L        +++     ++    ++    
Sbjct: 258 SMVHLKDVARIELGGENYNMVTKINGQAATGLGIKLATGANALDTAAAIKAKLAELQPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +  + I + + +++  +     L     + + + 
Sbjct: 318 PQGLKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 378 GTFAILAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMVEEKLPPKEATQKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  V  +M      +PMA +GGS       F++ +   + ++   ++ +   +   
Sbjct: 436 SQIQGALVGIAMVLSAVFVPMAFFGGSTGAIYRQFSLTIVSAMALSVLVALILTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 66/183 (36%), Gaps = 7/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +    +    L      +  G      L       +  IS I + + +   ++ W   
Sbjct: 838  EAMALMESLAAKLPNGIGHDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L   +L G+  ++     +LT IG S  + +++ +  +  M+    
Sbjct: 898  FSVMLVVPLGVVGALLAASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGR 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +   ++    L   + TS+A  + V+P+ +    G     +    +  G++ A  
Sbjct: 958  G--LIEATLEASRMRLRPILMTSLAFILGVMPLVISHGAGSGAQNAVGTGVMGGMLTATL 1015

Query: 811  SSI 813
             +I
Sbjct: 1016 LAI 1018


>gi|297580280|ref|ZP_06942207.1| protein-export membrane protein SecD [Vibrio cholerae RC385]
 gi|297535926|gb|EFH74760.1| protein-export membrane protein SecD [Vibrio cholerae RC385]
          Length = 612

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 150/513 (29%), Positives = 259/513 (50%), Gaps = 28/513 (5%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           D ++  L+ 
Sbjct: 112 ITYSYVSVAPKWLGNLGFSPIKLGLDLRGGVQFLLNVDVDKAFQEQRDSMMDAVKDSLRA 171

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           E +   +++ +      +F     +      V  +LQ        +  +   +     ++
Sbjct: 172 ERLRGVAVQAMGYD---AFEVKTEQPQALSHVRKYLQ--------ENYRGWEIRQGSDQL 220

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 221 QVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIELPGVQDPSQAK 280

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++           +    L D +G   ++  +  +SG H+  A A  D 
Sbjct: 281 NVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGEHIVNARAGVDN 338

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+         +    + +    Q+ 
Sbjct: 339 MGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSEKVISVATIQSQ 398

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I  G  A+  G+
Sbjct: 399 LGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGM 458

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 459 AMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 518

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  G G ++GFA+T
Sbjct: 519 VLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALT 578

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMFT +   RA++  +      + + 
Sbjct: 579 LGLGLLTSMFTGVFASRALINLVWGRDTRRDVR 611



 Score =  119 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 410 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 469

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 470 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 528

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 529 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 585

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  ++    + 
Sbjct: 586 SMFTGVFASRALINLVWGRDTRR 608


>gi|15842125|ref|NP_337162.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           CDC1551]
 gi|13882409|gb|AAK46976.1| protein-export membrane protein SecF [Mycobacterium tuberculosis
           CDC1551]
 gi|323718859|gb|EGB28015.1| protein-export membrane protein secF [Mycobacterium tuberculosis
           CDC1551A]
          Length = 442

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 133/296 (44%), Gaps = 11/296 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    G+S      +I  +   G  +GIDFKGG  +           V      +L  
Sbjct: 62  GRRRLWFGVSGAIVAVAIASIVFRGFTFGIDFKGGTTVSFPRGSTQVAQVEDVYYRALGS 121

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659
              S        +  V+++ +   S    ++ + + +          P     +   V  
Sbjct: 122 EPQSVVIVGAGASATVQIRSETLTSDQTAKLRDALFEAFGPKGTDGQPSKQAISDSAVSE 181

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++ +K ++ +++  + + +YI +R++ Y  + AIT ++ D+T T G ++L G E  
Sbjct: 182 TWGGQITKKAVIALVVFLVLVALYITVRYERYMTISAITAMLFDLTVTAGVYSLVGFEVT 241

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D V+V+D++ +N     +TT  +F +  + +IN+T  RS+ TS+
Sbjct: 242 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTFMRSINTSL 301

Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + VL +      + G   +   A+    GI++   SSIF A P+L+ + +   
Sbjct: 302 IGVLPVLALMLVAVWLLGVGTLKDLALVQLIGIIIGTYSSIFFATPLLVTLRERTE 357


>gi|308273581|emb|CBX30183.1| hypothetical protein N47_D29920 [uncultured Desulfobacterium sp.]
          Length = 346

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 98/347 (28%), Positives = 165/347 (47%), Gaps = 48/347 (13%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPV 589
              I     I F+  R+    +S L  + SI  L  HG  NYGIDF GG  + +  +  V
Sbjct: 1   MQFIKPGTKIDFIGKRYIAFSLSGLMILISIISLIFHGGLNYGIDFLGGSVIQLKFDSSV 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +++ ++S LES+ I   + Q F  +KN    ++     +  +    ++ +   +     +
Sbjct: 61  EIAKIKSGLESVDIRKATVQTFGEDKNNEYLVRTDTPVTADKEFTDKLEQALKSVTGQNA 120

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL------- 702
            I+  EIVGPK+ ++L  K ++ +  S + + IYI  RF++ +   AI  ++L       
Sbjct: 121 EIRRVEIVGPKVGKDLQEKALLAIFYSLLFLAIYISGRFEFKWLSSAILAVVLMGVVYFC 180

Query: 703 -------------DITKTLGF--------------------------FALFGIEFNLTAV 723
                         +  T  F                          F++ G EFNL  V
Sbjct: 181 SVFKINMALLIAFALFITFVFFWFLDLKYAMAAIVALVHDVIITVGMFSILGKEFNLPIV 240

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AAVL +IGYS+ND ++++DR+R+N+  +   IS   +I+KS+NETL R++ TS    + V
Sbjct: 241 AAVLAIIGYSLNDTIIIFDRIRENLPKHRK-ISLAAVINKSVNETLSRTILTSGLTLLVV 299

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           + + + GG +I  F   +  GI+V   SSI++A+PIL+       K 
Sbjct: 300 IALFILGGGIIHDFTFALIVGIIVGTYSSIYVASPILIAWQGKTKKK 346


>gi|31789383|gb|AAP58500.1| putative multidrug resistance pump [uncultured Acidobacteria
           bacterium]
          Length = 1040

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 68/577 (11%), Positives = 155/577 (26%), Gaps = 32/577 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   ++   G +       P   + ++P   P                     +
Sbjct: 9   RPILASVCSLVLILAGAIAI-----PTMPVAQYPPLAPPVI---------SVSTFYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++       S        I++ F  +R  +  A  V   +  
Sbjct: 55  AQAVETAVTTPLEQAINGVEGMLYMTSSSTNSGAASISVVFDVTRDSDIAAVDVQNRVST 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + + N +     +   ++ +    ++    ++  S  I     D +   E   
Sbjct: 115 ALARLPSEVRTNGVTVQKGQTGFVLAAGVYAEKGEYDSLFISNYIDVYVKDALKRVEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   +       N        G    RD+   Q 
Sbjct: 175 NVQIFGERRYSMRLWLDPGKLASRALTAGDVVNALREQNIQVAAGAIGQSPSRDNQRFQI 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +              +  +    I     G           +           
Sbjct: 235 SVRAAGRL-------------HEAGEFENVIIKAGRGGSLVRMKDIGTVELGAETYGSQL 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +              L     P     V          S   
Sbjct: 282 RFQGIDAVGFGVTQLPSANALDVERGVRAELDRLAVHFPPGLKYQVAFNTTQVVAESIRE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  L+   +I +++I   A + L+  ++   ++ GI+
Sbjct: 342 VLITLVEAIALVVLVMFLFLQSWRSTLIPTITIPVSLIGAFAFVKLMDFSINTLTLFGII 401

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L  G+ VD  I+V E I             +        +  +  + +  +   V + FF
Sbjct: 402 LATGIVVDDAIVVIENIERHIQEFKTPARKAASDAMREVFGAVIATALVLIAVFVPVAFF 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G   R    F++T+  S+ +S F A+++  A+   ++                 +    
Sbjct: 462 PGTTGRLYAQFSMTIAFSVALSAFNALTLTPALSALLLDRGHHGKGAFFSRVERVISGGT 521

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
            A   + +R   +   ++        L          
Sbjct: 522 NAYVSVLSRLLPLRWVVVLVFVICLGLTWLMYRIVPQ 558



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 88/247 (35%), Gaps = 6/247 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V +  + +     +      +    +       Q    +++   R +     ++ 
Sbjct: 257 RGGSLVRMKDIGTVELGAETYGSQLRFQGIDAVGFGVTQLPSANALDVERGVRAELDRLA 316

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P            ++  E IR+ ++ ++ +   +++ +++    W   L    T+ +
Sbjct: 317 VHFPPGLKYQVAFNTTQVVAESIREVLITLVEAIALVVLVMFLFLQSWRSTLIPTITIPV 376

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +     F  L     N   +  ++   G  V+D +VV + +     +       R    
Sbjct: 377 SLIGAFAFVKLMDFSINTLTLFGIILATGIVVDDAIVVIENI--ERHIQEFKTPARKAAS 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
            ++ E  G  + T++      +P+A + G+       F++ +AF + ++A +++ +   +
Sbjct: 435 DAMREVFGAVIATALVLIAVFVPVAFFPGTTGRLYAQFSMTIAFSVALSAFNALTLTPAL 494

Query: 820 LLFIYDW 826
              + D 
Sbjct: 495 SALLLDR 501



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 60/161 (37%), Gaps = 9/161 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +I     +L+Y+ +             +  + L +   L      G   ++     ++ L
Sbjct: 870  LIFGLAILLVYLTLSAQYESLVLPFIVLLGVPLAVLGALTAQWARGFANDVYCQIGLVML 929

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG +  + +++ +   + ++      +  +   ++    L   + TS+A  + VLP+   
Sbjct: 930  IGLAAKNSILIVE-FAEQLRH--KGATVVEAAVQAARIRLRPILMTSLAFILGVLPLVFA 986

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               G     S    +A G++V+   ++     + + +   R
Sbjct: 987  SGAGAEARNSVGTAVAGGMLVSTFLNLIFIPVLYVVVQTIR 1027


>gi|289670145|ref|ZP_06491220.1| RND superfamily protein MexF [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 1058

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 63/547 (11%), Positives = 156/547 (28%), Gaps = 35/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +P   +  +P  +P +              V     
Sbjct: 10  RPIFAAVLSIIIFAAGLIA-----MPLLPISEYPEVVPPSVQ---------VRAVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVVTVTFKPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +   +++  S     +  D++     
Sbjct: 114 SQAQARLPEDVRRQGVTTQKQSPTLTMVVHLTSPKGKYNSLYLSNYATLKVKDELSRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P ++     T + +       N        G   + +    
Sbjct: 174 VGQIQIFGAGDYAMRIWLNPDKVAARGLTASDVVAAIREQNVQVSAGQLGAEPMPNKSDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  ++                +    +                 +         
Sbjct: 234 LLSINAQGRLTTEE-------------EFGNIVIRSGNSGEIVRLSDVARLELGAGNYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +      A L+                     S 
Sbjct: 281 RSQLDNQNAVGMGVFQSPGANAIELSDAVRAKRAELQKQFPQDMAWSAAYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   S+ G
Sbjct: 341 SAVVHTLLEAVLLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++         + L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAMLLKSHDAPKDGPSRLIDRLFGWL 520

Query: 537 CIAIQFM 543
                  
Sbjct: 521 FRPFNRF 527



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTLLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+      G  V     I +  G+
Sbjct: 958  -LEMHGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVFGHGAGAEVRSVTGITVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      +F+     + +  W  +  
Sbjct: 1017 LGVTLFGLFLTPVFYVALRKWVTRRG 1042



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 56/143 (39%), Gaps = 14/143 (9%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 425 E---GLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASS----SIFIAAPILLFIYD 825
           ++       S+ ++  +   +  
Sbjct: 478 ISTVISAINSLTLSPALAAMLLK 500


>gi|206603899|gb|EDZ40379.1| Hydrophobe/amphiphile efflux family protein [Leptospirillum sp.
           Group II '5-way CG']
          Length = 1042

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 81/686 (11%), Positives = 192/686 (27%), Gaps = 41/686 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   +  ++  ++   G++           + +FP  +P               + +  
Sbjct: 6   LKRPIFAGVVAIIMVLTGMIA-----FKLLPVSQFPRIVPP-------------QVTVTA 47

Query: 61  DEDD----FVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKV 115
           +        V   +    +E+ S +     +   S     + IT++F      +  A  V
Sbjct: 48  NYPGASAQVVADTVTTPLEEVISGVPGMAYMSSNSSNDGSSTITITFKVGYPIDIAAVDV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +   + +L     +  +V   +    +++            I  S     Q +D + 
Sbjct: 108 QNRISQASPQLPAIVNQGGIVIQKKNPNFVLIVNLISPDGSIDPITMSNYAYLQIVDPLK 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +    +P +L +L  T   +       N        G      
Sbjct: 168 RLPGVSDAQIFGERRYSMRIWLNPDKLSRLGVTAVDVQNAIAEQNIQVAAGKIGEAPAPR 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
               +Y V     +S                   + +                 I     
Sbjct: 228 GTMFEYQVNALGRLS------------TPEEFGNIIVKAGTTSNAAVRLRDVARIRLGSL 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +                +     +        L           ++       
Sbjct: 276 QYTSAAHMDKNKTIVIGIFQAPGSNALDLDKAVKDKMKELSKRFPKGMTYSIKYDTTMFV 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV+IV+F+ +   +  ++A  +I +++I TLA++ ++G +L   
Sbjct: 336 SASMHEVVFTLLEALILVMIVVFLFLQSWRTMVIAGIAIPVSLIGTLAVMKIVGFSLNTV 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+ G+VL IGL VD  I+V E +  +         ++ +        I  ++       V
Sbjct: 396 SLLGMVLAIGLVVDDAIVVVENVERQLEHGLPPMEAVRIAMGEVTGPIIATSAVLGAVFV 455

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F     G   R FA+T+ +S+ +S F ++++  A+  +++RY+    I +       
Sbjct: 456 PVGFLPGVTGELYRQFALTIAISVGLSAFNSLTLTPALSGWLLRYRGPSEIFVFRKFNEI 515

Query: 533 LIPDCIAIQFMRARFW---GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                     M  R        + +      +       + +            +  +  
Sbjct: 516 FNTVRDGYARMIHRAIEAKWYAMGLFLGGIIMTYGLFVRVPHTFLPVEDQGYFFVIIQLP 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D + +       +    +     G  + +    +       Q+             V   
Sbjct: 576 DGASLERTENVAKTVRDTLLATPGIDHVVSISGFNFLTFANQSNSAAEFAILKPWEVRGR 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGVII 675
               + IV     + L+    + +  
Sbjct: 636 YRTASMIVNEVRPKLLMIPAGLALAF 661



 Score = 88.6 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 83/203 (40%), Gaps = 9/203 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A    ++ + K+  + +  S   +T +       E++   +  +I+  I + +++   
Sbjct: 305 DKAVKDKMKELSKRFPKGMTYSIKYDTTMFVSASMHEVVFTLLEALILVMIVVFLFLQ-- 362

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   + A   + + +  TL    + G   N  ++  ++  IG  V+D +VV + +   
Sbjct: 363 -SWRTMVIAGIAIPVSLIGTLAVMKIVGFSLNTVSLLGMVLAIGLVVDDAIVVVENV--- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +     +   + +  ++ E  G  + TS       +P+       G +   FA+ +A  
Sbjct: 419 ERQLEHGLPPMEAVRIAMGEVTGPIIATSAVLGAVFVPVGFLPGVTGELYRQFALTIAIS 478

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
           + ++A +S+ +   +  ++  +R
Sbjct: 479 VGLSAFNSLTLTPALSGWLLRYR 501



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 61/162 (37%), Gaps = 7/162 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + +++   ++ W      I  + L I   +    L G + ++ +    + LIG 
Sbjct: 875  GISLVFVFLFLAALYESWSMPFMVILAVPLAIFGAIFATWLRGKQLDVYSQIGFVMLIGL 934

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            S  + +++ +  R   +L        +   ++    L   + T+ A  + V+P+ V    
Sbjct: 935  SAKNAILIVEFAR---RLREKGEGIVEAAMEAGRLRLRPILMTAFAFILGVIPLMVATGA 991

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G +   S    +  G++ A   S+         I  +R    
Sbjct: 992  GAASRQSIGTTVFGGMLAATILSLGFVPIFYAVIEKFREGRK 1033


>gi|157960979|ref|YP_001501013.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           pealeana ATCC 700345]
 gi|157845979|gb|ABV86478.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella pealeana ATCC 700345]
          Length = 1043

 Score =  187 bits (473), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 70/686 (10%), Positives = 175/686 (25%), Gaps = 40/686 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ +++  +GL+       P   +  FP   P          +           
Sbjct: 9   RPKFAFVISTVLTLVGLISI-----PVLSVSEFPEIAPP---------QVSVSTSYSGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++             +  + ++F      +    KV   +Q 
Sbjct: 55  ADIVKDTIAQPLEAEVNGVEGMLYMESKSANDGSYSLNVTFEVGTDADMAQVKVQNRVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + K+  +    +    +++           ++  +        D +       
Sbjct: 115 AMPRLPEEVKRQGVKVEKQSPNMLMVVNLVSPNETFDSLFITNYAGLNVKDALARQYGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    DP ++  L  T   +       N        G   +      QY
Sbjct: 175 KVQVIGALDYAMRIWLDPDQMASLGVTATDVIGALQEQNIQVAAGRIGAAPVDPEQQFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  +                 +    +        +        +           
Sbjct: 235 TLQTKGRL-------------KDPQEFYDVMIRANNDGSKVVVGDVARVELGSQTYDAQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +        L           V          S   
Sbjct: 282 KLNNKPSAIISIYQSPDANALEVGKAIKAEMEKLSERFPNDLEYEVLYDTTEFVETSIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+ V+F+ +   +  LV   +I +++I T A L   G ++   S+  ++
Sbjct: 342 VVQTLFISIALVVFVVFIFLQDVRSTLVPAIAIPVSLIGTFAFLLAFGMSINTVSLFALI 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +           I  + +  L         
Sbjct: 402 LAIGIVVDDAIVVVENVTRLMQDEGLSPKEATSKAMKEVTGPIIATTLVLLAVFAPTAVM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIF------IIRYKKMKSIDINPLSRF 531
               G     F++T+ +S+LIS   A+++  A+         +       + + +     
Sbjct: 462 PGITGQMYAQFSVTICISVLISSINALTLSPALCASVLRAPKLHEKGFHAAFNKHFERVT 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 ++    +    G+    L  +              ++ K    + +       L
Sbjct: 522 GKYMKLVSSLTRKLVLVGIVYGCLILLTGGIAKILPSGFVPMEDKKAFMVDIQLPDGASL 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +     +  L    ++    +   +           S     ++  +             
Sbjct: 582 NRTEDVMRDLVELTLAEPGVENVIHASGFSILTGSVSSNGGLMIVTLSTWDERESADMME 641

Query: 652 QNTEIVGPKISRELIRKGIVGVIISA 677
                     ++      +  +  S 
Sbjct: 642 SAIVAKLQ--AKYAANPAVKAMAFSL 665



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 70/226 (30%), Gaps = 9/226 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                +       G   A     + +               T     +  +E+    +  +
Sbjct: 813  NNYNMFSSTTINGFPAAGFSSGDAITAMERAANESLPSGYTYEWTGQTYQEIKAGNLAPL 872

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I     +  Y+++      W      I  + + +        L G + NL A   ++ LI
Sbjct: 873  IFGLALVFTYLFLVAQYESWTIPFAVILAVPIAVLGAFLNILLVGSDLNLYAQIGLVLLI 932

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G +  + +++ +  +   +L     S  +  + +        + T+ +  + VLP+ +  
Sbjct: 933  GLACKNAILIVEFAK---QLREEGKSILEAGETAARLRFRAVLMTAFSFLLGVLPLVIAT 989

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              G     +    +  G++ A      +     + +   R K   +
Sbjct: 990  GAGAGSRRALGYSVFGGMLAATVVGTLLVPVFYVIMQKMREKAKGL 1035



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 81/194 (41%), Gaps = 8/194 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +E + ++    +    + +T        +E+++   + + +    + I++    
Sbjct: 306 KAIKAEMEKLSERFPNDLEYEVLYDTTEFVETSIKEVVQTLFISIALVVFVVFIFLQ--- 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + +  T  F   FG+  N  ++ A++  IG  V+D +VV + +    
Sbjct: 363 DVRSTLVPAIAIPVSLIGTFAFLLAFGMSINTVSLFALILAIGIVVDDAIVVVENV--TR 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S ++   K++ E  G  + T++       P AV     G +   F++ +   +
Sbjct: 421 LMQDEGLSPKEATSKAMKEVTGPIIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICISV 480

Query: 806 VVAASSSIFIAAPI 819
           ++++ +++ ++  +
Sbjct: 481 LISSINALTLSPAL 494


>gi|118591602|ref|ZP_01548999.1| Hydrophobe/amphiphile efflux-1 HAE1 [Stappia aggregata IAM 12614]
 gi|118435930|gb|EAV42574.1| Hydrophobe/amphiphile efflux-1 HAE1 [Stappia aggregata IAM 12614]
          Length = 1045

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/688 (10%), Positives = 178/688 (25%), Gaps = 48/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    G L           + ++P   P             + + +  + 
Sbjct: 8   RPIFAWVIAIVTMLAGALAI-----TTLSVSQYPQIAP-------------TTVNISANY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S      +I+L+F+     +    +V  
Sbjct: 50  PGADAATVENSITKVIEQGMSGIDHLDYMTATSSNTGSAQISLTFSSKADPDVAQMQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ V+S+L    +   +  T      +++           + + +  +     D +   
Sbjct: 110 KLQLVSSQLPQIVQNTGITVTKSTSGFLMVLGFVSTDGRLTSTDIADYVDNTLNDTLKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP +L +     + +S      N        G     +  
Sbjct: 170 EGVGETRLFGSG-YAMRIWLDPKKLLKYNLMPSDVSSAIQAQNTQVSAGQLGGLPQVEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +                 +    I                 +       
Sbjct: 229 QLNATITASSRL-------------QTAQQFRDIILKSSEDGSVVRLNDVARVEVSNESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    S     +   T +        L +        +           
Sbjct: 276 STSAFYNGKPASGLAVSLATGANAIDTAQRVRETIDRLSSTLPAGVDVVYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T  +L+L G ++   ++
Sbjct: 336 SIEKVVHTLLEAVVLVFLVMYLFLQNLRATIIPTLAVPVVLLGTFGVLALFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +           +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMKEITGALIGIAVVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+F A+ +  A+   I++                 
Sbjct: 456 MAFFGGSVGIIYRQFSITIVSAMVLSVFVALILTPALCATILKKGDHGHSRGPFAWFNKG 515

Query: 534 IPDCIAIQF-------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                            R + + V    +                  + +G +   V   
Sbjct: 516 FDASANGYRAANGGILKRGKRFLVLFIAIGVAMGWMFSRLPSSFLPQEDQGILIAMVNLP 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                    + L+ ++   +  +    +  F V      G           +K       
Sbjct: 576 VGATQGRTLTVLDKVRTHFMENEPDAVDSVFTVAGFGFGGQGQNVGLAFVRMKDFTERED 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
           P    Q           +L    +  + 
Sbjct: 636 PRLAAQAVAGRAMGAFSQLKDARVFALA 663



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 91/235 (38%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V     S +    S        + L        +++   + +     +++  +P 
Sbjct: 260 VRLNDVARVEVSNESYSTSAFYNGKPASGLAVSLATGANAIDTAQRVRETIDRLSSTLPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I K +  ++ + + + + +++  +     +     + + +  T
Sbjct: 320 GVDVVYPYDTTPFVKLSIEKVVHTLLEAVVLVFLVMYLFLQNLRATIIPTLAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  ++   KS+ E
Sbjct: 380 FGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMKE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +  ++      +PMA +GGSV      F+I +   +V++   ++ +   +
Sbjct: 438 ITGALIGIAVVLSAVFVPMAFFGGSVGIIYRQFSITIVSAMVLSVFVALILTPAL 492



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 76/262 (29%), Gaps = 9/262 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +         V  +    +            G    + F+G     ++ Q  PG S    
Sbjct: 776  MQPSDLDLWHVRNSNGDMVPFSAFASSRWTYGSPRLERFNGASAVELQGQAAPGVSSGDA 835

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                           +               +      + ++I  + +     +   W  
Sbjct: 836  MAEIDALVSQLPTGFVHQWTGLSYQERLSGDQAASLYAISILIVFLCLA---ALYESWSI 892

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + ++ + +   L    +FG   ++     +LT IG +  + +++ +   +      
Sbjct: 893  PFAVMLSVPIGVFGALAAALIFGQTNDVYFKVGLLTTIGLAAKNAILIVEFAIE---RQR 949

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
                       +  + L   + TS A  + V P+A+    G     S  I +  G++ + 
Sbjct: 950  QGKDLLQATLDAARQRLRPILMTSFAFILGVTPLAIATGAGSGAQNSIGIGVMGGMIAST 1009

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
               IF    + + +    ++  
Sbjct: 1010 LLGIFFVPLLFVTVRRIFSRKQ 1031


>gi|58039159|ref|YP_191123.1| acriflavin resistance protein B [Gluconobacter oxydans 621H]
 gi|58001573|gb|AAW60467.1| Acriflavin resistance protein B (mulitdrug efflux system)
           [Gluconobacter oxydans 621H]
          Length = 1058

 Score =  187 bits (473), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/687 (10%), Positives = 171/687 (24%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G +        +  + ++PS  P               + + V  
Sbjct: 10  RPIFAWVIGLIIMLVGAVAI-----TRMPIAQYPSIAPP-------------QIAISVMY 51

Query: 63  DDFVNGFLQM-YSDELRSFLKKEGIGV----FSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +            S    Q +I L+F      +    +V  
Sbjct: 52  PGASAETVNNTVVRPILQQMYGLDHLEYLSASSYASGQMEIDLTFEQGTDPDIAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  +     L  T   +  +++     +       + +  +     D +   
Sbjct: 112 KLQLAQPRLPSEVTAQGLSITKATKNFMMVLAFISEDGSMSGQDIADYVASNISDPLSRV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DPS+L     T   +       N        G    +   
Sbjct: 172 SGVGDHTLFGS-EYAMRVWLDPSKLYNFGLTVGDVQTAISAQNIQVSSGELGGLPAKKGI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G    +     +S                +    +   +    +        +       
Sbjct: 231 GFDATIIGPTRLS-------------TPEQFKEILLKVQQDGSQVRLKDVARVELGAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G V      +          +   T          L          +           
Sbjct: 278 ALGSVYNNHPASAMALKLAPGANQLKTEAAVRARLNELSRYFPQGLKLVYPLDTEPFITL 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+ + +   +  L+   ++ + ++ T  L+S+LG ++   ++
Sbjct: 338 SIHEVVQTLIEAIVLVFIVMLIFLQNFRATLIPTIAVPVVLLGTFGLMSILGYSINTLTM 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL +GL VD  I+V E +      K  S   +  +        +    +      + 
Sbjct: 398 LAMVLAVGLLVDDAIVVVENVERVMTDKGLSPKEAARVSMDEISGALVGIVLVLTAVFLP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +  FGG      R F+IT+  ++ +S+  A+ +  A+   +++                 
Sbjct: 458 MAAFGGSTGVIYRQFSITIVAAMWLSVLVAMVMTPALCASMLKPTHKGHERGPAAWFNRT 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSI-------CLLFTHGLNYGIDFKGGIQLGVLAN 586
                       ++      +     ++         +   G     + +G I   V   
Sbjct: 518 FDRLTNGYIGGVKWLIRVPVVSMIGFALLTGLVAFLFMRVPGGFLPDEDQGIIFGQVTMR 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                    +    +    +       E  F +      G   +       +K       
Sbjct: 578 NGATQEQTAAVNRKITDYVLKTYGQYVESVFTMTGFSFAGQGQSAGAFFIRMKPWDQRPG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
              T                   I  V
Sbjct: 638 SAHTTMTVSREIMMHFWMDPEAQIFAV 664



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/196 (18%), Positives = 80/196 (40%), Gaps = 8/196 (4%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
              A    L  + +   + + L    +TE        E+++  I  +++  I MLI++  
Sbjct: 304 TEAAVRARLNELSRYFPQGLKLVYPLDTEPFITLSIHEVVQTLIEAIVLVFIVMLIFLQ- 362

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +   L     + + +  T G  ++ G   N   + A++  +G  V+D +VV + +  
Sbjct: 363 --NFRATLIPTIAVPVVLLGTFGLMSILGYSINTLTMLAMVLAVGLLVDDAIVVVENV-- 418

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    +S ++    S++E  G  V   +      LPMA +GGS       F+I +  
Sbjct: 419 ERVMTDKGLSPKEAARVSMDEISGALVGIVLVLTAVFLPMAAFGGSTGVIYRQFSITIVA 478

Query: 804 GIVVAASSSIFIAAPI 819
            + ++   ++ +   +
Sbjct: 479 AMWLSVLVAMVMTPAL 494



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 72/205 (35%), Gaps = 9/205 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            ++     Y+     A          ++ +++                 +L   G    + 
Sbjct: 815  DYNGLNAYEIQGQPAVGASSGQAMAEMEKLLAKLPRGIGYEWTGLSFEQLASGGSTAPLY 874

Query: 676  SAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +   ++I      +   W      +  L L +   +      G+  ++     +LT +G 
Sbjct: 875  ALATVVILFCLAALYESWAIPFAVLLVLPLGVLGAIVATLGRGLSNDVYFQVGLLTTVGL 934

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            SV + +++ +  +     + +  +  D + ++  E L   + TS+A    V P+A+    
Sbjct: 935  SVKNAILIVEFAK---AFFESGETLEDSVLEAGRERLRPILMTSIAFVCGVFPLAIATGA 991

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIF 814
            G +   +    +  G++ A   +I+
Sbjct: 992  GSAARVAIGTCVVGGMLSATLLAIY 1016


>gi|212702501|ref|ZP_03310629.1| hypothetical protein DESPIG_00518 [Desulfovibrio piger ATCC 29098]
 gi|212674162|gb|EEB34645.1| hypothetical protein DESPIG_00518 [Desulfovibrio piger ATCC 29098]
          Length = 366

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 101/345 (29%), Positives = 165/345 (47%), Gaps = 49/345 (14%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICL-LFTHGLNYGIDFKGGIQLGVLANR 587
             F  I     I F+  R     ISIL  +  +   L+ +GL  GIDF GG+ + V   +
Sbjct: 1   MAFAFIKHDTKIDFIGKRHIAYVISILLLLVGLGSALWGNGLRMGIDFAGGVIVQVQFAQ 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFD-GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           PV+  V++ +L+  ++  IS Q F  G +++L+R         A  R   +         
Sbjct: 61  PVEDEVLKKSLDVPELPGISTQRFGEGTRDYLLRFSSAENTDAAALRTNVLAALAKAFPG 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----------------- 689
               IQ  EIVGPK+  +L  K +  +  + + + +YI  RF+                 
Sbjct: 121 NDVEIQRLEIVGPKVGDDLTNKALGALYYATLLIAVYISGRFEQRWMAGVAMAAVLWGGM 180

Query: 690 -----------------------------WYFALGAITTLILDITKTLGFFALFGIEFNL 720
                                          FALGA+  LI D+  T+G  +L  +E +L
Sbjct: 181 YLAGLTGLSMGWLVLVALGITLVVCFVLKLNFALGALVGLIHDVFITVGLLSLMNVEIDL 240

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +AA+LTL+GYS+ND ++VYDR+R+N++          LI++S+N+TL R++ TS   F
Sbjct: 241 NVMAALLTLVGYSLNDTIIVYDRLRENLRAAPK-QPLDFLINRSVNQTLSRTLLTSGTTF 299

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++ L + + GG VI  FA+ M  G+ V  +SSI++++ +LL + D
Sbjct: 300 VATLALYLLGGGVIHDFALTMLIGVFVGTASSIYVSSAVLLALGD 344


>gi|26990169|ref|NP_745594.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida KT2440]
 gi|24985107|gb|AAN69058.1|AE016538_7 multidrug efflux RND transporter [Pseudomonas putida KT2440]
          Length = 1042

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/687 (12%), Positives = 184/687 (26%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P+  P               + +    
Sbjct: 8   RPVFAWVVALFILLAGALAI-----PQLPVAQYPNVAPP-------------QVEIYAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  + +     +   L                   IT +FA     +     V   
Sbjct: 50  PGASAATMDESVVSLIEQELNGADNLLYFESQSSLGSATITATFAPGTHPDLAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V S+L     +  L         ++L+    +         S  + R  +D+I   +
Sbjct: 110 LKVVESRLPRPVTQQGLQVEKVSTGFLLLATLTSEDGKLDETALSDILARNVMDEIRRLK 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +L     T   ++      N        G    R +  
Sbjct: 170 GVGKAQLYGS-ERAMRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPSRSTQE 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K ++S                +    +                 +        
Sbjct: 229 ITANVVVKGQLS-------------SPDEFAAIVLRANPDGSTVTIGDVARVEIGAQEYQ 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G  L                +   T          L           +          S
Sbjct: 276 YGTRLNGKPATAFSVQLSPGANAMETATLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV  V+F+ +   ++ L+    + + ++ T A++  +G ++ + ++ 
Sbjct: 336 IEQVINTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +      +      +    I    +  +   + +
Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMAEEGLPPKQATRKAMGQISGAIVGITLVLVAVFLPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFF 532
            F  G      + F+++M +SIL S F A+S+  A+   +++                F 
Sbjct: 456 AFMQGSVGVIYQQFSLSMAVSILFSAFLALSLTPALCATLLKPVAKGEHHERKGFFGWFN 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG-----IDFKGGIQLGVLANR 587
              + ++  + R     +  S  + +    LL   G  +                +   +
Sbjct: 516 RRFESMSNGYQRWVVQALKRSGRYLLVYAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQ 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +      +     +       G  N  + L +    S     +     K  +E   
Sbjct: 576 LPPGASRMRTEQVAAQIEAHNAEEPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSERGA 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             + Q+          +L       V+
Sbjct: 636 DDSAQSIADRATMAFTQLKDAIAYSVL 662



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 80/243 (32%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q      +                 +++    ++    + +    
Sbjct: 257 STVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANAMETATLVRAKMQDLARYF 316

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I + I  +  + + +   +++  +   + L     + + + 
Sbjct: 317 PEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALM 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++  IG  V+D +VV + +     +    +  +    K++
Sbjct: 377 GTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPKQATRKAM 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      LPMA   G   VI   F++ MA  I+ +A  ++ +   +   
Sbjct: 435 GQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSILFSAFLALSLTPALCAT 494

Query: 823 IYD 825
           +  
Sbjct: 495 LLK 497



 Score = 41.6 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W      +  + L +   +    L G+  ++     +
Sbjct: 866  QAPLLMALSLLVVFLCLAALYESWSIPTAVLLVVPLGVLGAVLAVTLRGMPNDVFFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG S  + +++ +  +    L    +   D   ++    L   V TS+A  + V+P+
Sbjct: 926  ITLIGLSAKNAILIIEFAK---HLVDQGVDAADAAVQAARLRLRPIVMTSLAFILGVVPL 982

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSS 812
            A+  G+   S    +  G++    S+
Sbjct: 983  AIASGASSAS-QQAIGTGVIGGMLSA 1007


>gi|78047097|ref|YP_363272.1| RND superfamily protein MexF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325928733|ref|ZP_08189903.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
 gi|78035527|emb|CAJ23173.1| RND superfamily protein MexF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325540901|gb|EGD12473.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
          Length = 1058

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/547 (11%), Positives = 155/547 (28%), Gaps = 35/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +P   +  +P  +P +              V     
Sbjct: 10  RPIFAAVLSIIIFAAGLIA-----MPLLPISEYPEVVPPSVQ---------VRAVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVVTVTFKPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +   +++  S     +  D++     
Sbjct: 114 SQAQARLPEDVRRQGVTTQKQSPTLTMVVHLTSPKGKYNSLYLSNYATLKVKDELSRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P ++     T + +       N        G   + +    
Sbjct: 174 VGQIQIFGAGDYAMRIWLNPDKVAARGLTASDVVAAIREQNVQVSAGQLGAEPMPNKSDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  ++                +    +                 +         
Sbjct: 234 LLSINAQGRLTTEE-------------EFGNIVIRSGNSGEIVRLSDVARLELGAGNYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +      A L                      S 
Sbjct: 281 RSQLDNQNAVGMGVFQSPGANAIELSDAVRAKMAELEKQFPQDMAWSAAYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   S+ G
Sbjct: 341 SAVVHTLLEAVLLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++         + L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAMLLKSHDAPKDGPSRLIDRLFGWL 520

Query: 537 CIAIQFM 543
                  
Sbjct: 521 FRPFNRF 527



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L   + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTLLSALFGVWLTNGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+      G  V     I +  G+
Sbjct: 958  -LEMHGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVFGHGAGAEVRSVTGITVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      +F+     + +  W  +  
Sbjct: 1017 LGVTLFGLFLTPVFYVALRKWVTRRG 1042



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 56/143 (39%), Gaps = 14/143 (9%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 425 E---GLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASS----SIFIAAPILLFIYD 825
           ++       S+ ++  +   +  
Sbjct: 478 ISTVISAINSLTLSPALAAMLLK 500


>gi|311281341|ref|YP_003943572.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter cloacae SCF1]
 gi|308750536|gb|ADO50288.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter cloacae SCF1]
          Length = 1041

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/521 (12%), Positives = 149/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +           + ++P   P               + +    
Sbjct: 8   RPVFAWVLAIILMLAGAMAI-----SILPIAQYPQIAPPA-------------ITISAAY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +    G+   S          ITL+F+     +    +V  
Sbjct: 50  PGADAATVQGAVTQVIEQNMNGLDGLMYMSSTSDAAGNATITLTFSSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L ++ ++  +  T      ++++    D       + +  +     D +   
Sbjct: 110 KLQLAVPSLPLEVQQQGISVTKSGSSILLVAAFISDDGSLSQYDIADYVASNLKDPLSRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L Q       +       NN   G   G     DS 
Sbjct: 170 PGVGSVQLFGSP-YAMRVWLDPAKLNQYHLQPQDVIAQIQAQNNQVSGGQLGGAPQPDSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +             I       
Sbjct: 229 QLNASIIVQTRL-------------QSADEFGKILMKVQQDGSHVLLRDVARITLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L          +           
Sbjct: 276 GTVARYNGKPAAGIAIKLATGANALDTAKAVRSELTRLSPWFPDSMQVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L++ G T+   ++
Sbjct: 336 SIAEVVKTLVEAIVLVFLVMYLFLQNLRATLIPTLAVPVVILGTFAVLAVTGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    ++   S   +     ++    +    +      + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVIQEEHLSPREATHKSMTQIQGALVGVAVVLAAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           +   G   G   R F++T+  ++ +S+ TA+S   A+   +
Sbjct: 456 MAMLGGSTGEIYRQFSVTIVAAMALSVLTAMSFTPALCATL 496



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++   + +     +++   
Sbjct: 258 SHVLLRDVARITLGAESYGTVARYNGKPAAGIAIKLATGANALDTAKAVRSELTRLSPWF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S             +  I + +  ++ + + + + +++  +     L     + + I 
Sbjct: 318 PDSMQVVYPYDTTPFVKISIAEVVKTLVEAIVLVFLVMYLFLQNLRATLIPTLAVPVVIL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A+ G   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFAVLAVTGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIQEEHLSPREATHKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA+ G   G +   F++ +   + ++  +++     +   
Sbjct: 436 TQIQGALVGVAVVLAAVFIPMAMLGGSTGEIYRQFSVTIVAAMALSVLTAMSFTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 90/266 (33%), Gaps = 10/266 (3%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                          +   +   V +S V +   +     +   N +     L        
Sbjct: 775  MPFRMQPGNIDSWYVRNASGDMVPVSAVTTTGWTRGSPRLERYNGEPAMEILGEAAPGKS 834

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A  ++  +V K    +    T  + +         L+   ++ V++  + +     +
Sbjct: 835  TGEAMAQMAALVAKLPAGVGYDWTGMSYQERLSSGQAPLLY--LISVVVVFLCLA---AL 889

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               W      +  + L +T  L   +L G+  ++     +LT IG S  + +++ +    
Sbjct: 890  YESWSIPFSVMLVVPLGVTGALLATSLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVD 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
             MK      S  +   ++    L   + TS+A  + V+P+ +    G     +    +  
Sbjct: 950  LMKREKK--SLTEAALEAAQMRLRPILMTSLAFILGVMPLVLSHGAGSGAQNAVGTGVMG 1007

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAK 829
            G++ A   +I+     ++ ++   A+
Sbjct: 1008 GMIAATVLAIYFVPAFIVVVFRLFAR 1033


>gi|294665673|ref|ZP_06730949.1| RND superfamily protein MexF [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604568|gb|EFF47943.1| RND superfamily protein MexF [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1058

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/547 (11%), Positives = 155/547 (28%), Gaps = 35/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +P   +  +P  +P +              V     
Sbjct: 10  RPIFAAVLSIIIFAAGLIA-----MPLLPISEYPEVVPPSVQ---------VRAVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVVTVTFKPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +   +++  S     +  D++     
Sbjct: 114 SQAQARLPEDVRRQGVTTQKQSPTLTMVVHLTSPKGKYNSLYLSNYATLKVKDELSRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P ++     T + +       N        G   + +    
Sbjct: 174 VGQIQIFGAGDYAMRIWLNPDKVAARGLTASDVVAAIREQNVQVSAGQLGAEPMPNKSDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  ++                +    +                 +         
Sbjct: 234 LLSINAQGRLTTEE-------------EFGNIVIRSGNSGEIVRLSDVARLELGAGNYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +      A L                      S 
Sbjct: 281 RSQLDNQNAVGMGVFQSPGANAIELSDAVRAKMAELEKQFPQDMAWSAAYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   S+ G
Sbjct: 341 SAVVHTLLEAVLLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++         + L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAMLLKSHDAPKDGPSRLIDRLFGWL 520

Query: 537 CIAIQFM 543
                  
Sbjct: 521 FRPFNRF 527



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L   + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTLLSALFGVWLTNGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+      G  V     I +  G+
Sbjct: 958  -LEMHGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVFGHGAGAEVRSVTGITVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      +F+     + +  W  +  
Sbjct: 1017 LGVTLFGLFLTPVFYVALRKWVTRRG 1042



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 56/143 (39%), Gaps = 14/143 (9%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 425 E---GLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASS----SIFIAAPILLFIYD 825
           ++       S+ ++  +   +  
Sbjct: 478 ISTVISAINSLTLSPALAAMLLK 500


>gi|59711481|ref|YP_204257.1| preprotein translocase subunit SecF [Vibrio fischeri ES114]
 gi|59479582|gb|AAW85369.1| protein translocase subunit SecF-like protein [Vibrio fischeri
           ES114]
          Length = 299

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/276 (28%), Positives = 147/276 (53%), Gaps = 6/276 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R     +S+   I ++ ++ T GLN+G+DF GGI   V  +  +  S +   L++   
Sbjct: 10  KWRHMTSVVSVCLMIFALTMIATKGLNWGLDFTGGIVSEVQLDSKITNSEIAPLLDAGFK 69

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            D++         +++R    P  +         + + +  +     + NT IVGP++ +
Sbjct: 70  QDVAVIASGEPGRWVLRYAIPPHGTELPP-----LTEVLAPLHTDVQVLNTSIVGPQVGQ 124

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + +++S + +L Y+  RF+W  A G++  L  DI   LGFFA   +EFNLT +
Sbjct: 125 ELTEQGGMALLVSVLVILAYLSYRFEWRLASGSLFALTHDIVFVLGFFAATQMEFNLTTL 184

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA+L ++GYS+ND +++ DR+R+ + +    +S +++ ++++  T  R++ TS    I+V
Sbjct: 185 AAILAILGYSLNDSIIIADRIRE-LLIAKPELSIQEINNEAVAATFSRTMVTSGTTLITV 243

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             + + GG  +  FAI M  GIV    SSI +   +
Sbjct: 244 GSLWLLGGGPLEGFAIAMFIGIVTGTWSSISVGTSL 279


>gi|83814610|ref|YP_444863.1| multidrug resistance protein, putative [Salinibacter ruber DSM
           13855]
 gi|83756004|gb|ABC44117.1| multidrug resistance protein, putative [Salinibacter ruber DSM
           13855]
          Length = 1074

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/664 (11%), Positives = 186/664 (28%), Gaps = 43/664 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   +I   G +           +  +P+  P                     
Sbjct: 35  RRPVLSTVFALLIMIFGAV-----GFYFLGVREYPAVDPPII---------SVSTQYRGA 80

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D ++  +    +E  + +          R+ Q+ +T+ F      E  A+ V   +  
Sbjct: 81  NADVIDSQITEPLEEQINGIDGIRTIESVSREGQSTVTVEFDLGADLERAANDVRDRVSR 140

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D +   +  +      IV      +      +E +    ++  +++   E   
Sbjct: 141 AQQQLPPDAEPPSVSKSDASAPPIVFLNIESE--TRSLMELTEIADKRFKERLQTIEGVS 198

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +  E DP +L     T   +                          N  
Sbjct: 199 RVDIWGEKTYSMRLELDPQKLAAYDLTPLDVRQAL-------------------DQSNVE 239

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   ++E   I L   T +           +       +                     
Sbjct: 240 LPSGRIEGETIELTVRTKSRLETVEDFNSLLLKQSPDGQTVRLEDVGKADIAPLNERTLL 299

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   +       +    ++        ++A         +   N      S S 
Sbjct: 300 QRDNVPMVGVVLRPLPGANYIDIVDEFYRRVDDIKAELPSDLELGIGFDNTEPIRDSISE 359

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++++F+ +   +  ++    + + +  +  ++  +G ++ + ++  +V
Sbjct: 360 VQQTIFIAFLLVVLIIFLFLRDWRSTIIPLIVVPIALTGSFFVMYAMGFSINVLTLLALV 419

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I  +  + +    +   G    +  +  ++++ +I    + F G
Sbjct: 420 LAIGLVVDDAIVVLENIYAKIEEGKDTMVAGLEGTREIFFAVVATSVSLVIIFAPIIFMG 479

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F + +  ++  S F A+++   +   +++ +  K          F      
Sbjct: 480 GLTGQLFQEFGMVIAGAVAFSSFVALTLTPMLSTRLLKQRDEKPWIYRKTEPVFESLTDA 539

Query: 539 AIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             +    FM  R+    I     +  I              +    + + A      +  
Sbjct: 540 YRRSLEAFMEYRWAAFVIMAGCIVV-ITTFHFTLPQELAPLEDRSLVRMNATAREGATYD 598

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +    ++ +   +    E          PG   A +     +  ++         Q  
Sbjct: 599 YMSGYVDRMYEALDETIPAEHQRSTISVTSPGFGAASSVNSAFMFTRLVPPGERDVSQMQ 658

Query: 655 EIVG 658
               
Sbjct: 659 YADS 662



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 78/213 (36%), Gaps = 7/213 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              ++                      ++ + V       T     +  +E   + +    
Sbjct: 830  NRYMSATVSARPAPGNTIEDGIGAMDRVADDVLGPAFSTTLTGQSRDFQETSNQLLYVFG 889

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ + + + +  +F+ +   L  + T+ L +   + F   F    N+ +   ++ LIG  
Sbjct: 890  LALVLIYLVLAAQFESFRDPLVILFTVPLALAGAMLFLWYFNQTINIFSQIGMVMLIGLV 949

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ +      +     +S R+ I+++        + T+++  + VLP+A+    G
Sbjct: 950  AKNGILIVEFAN---QRKAAGLSIREAIEEAAAVRFRPILMTALSTILGVLPIALALGAG 1006

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    + +  G++V    S+++      ++
Sbjct: 1007 AQSRVPMGVAVIGGLLVGTVLSLYVIPATYTYL 1039



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 72/199 (36%), Gaps = 9/199 (4%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           ++ +K ++   + L    +          E+ +   +  ++  + + +++     W   +
Sbjct: 330 VDDIKAELPSDLELGIGFDNTEPIRDSISEVQQTIFIAFLLVVLIIFLFL---RDWRSTI 386

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             +  + + +T +       G   N+  + A++  IG  V+D +VV + +          
Sbjct: 387 IPLIVVPIALTGSFFVMYAMGFSINVLTLLALVLAIGLVVDDAIVVLENI---YAKIEEG 443

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASS 811
                   +   E     V TS++  I   P+   G   G +   F + +A  +  ++  
Sbjct: 444 KDTMVAGLEGTREIFFAVVATSVSLVIIFAPIIFMGGLTGQLFQEFGMVIAGAVAFSSFV 503

Query: 812 SIFIAAPILLFIYDWRAKN 830
           ++ +   +   +   R + 
Sbjct: 504 ALTLTPMLSTRLLKQRDEK 522


>gi|326569856|gb|EGE19906.1| RND system efflux pump AcrB [Moraxella catarrhalis BC8]
          Length = 1051

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 205/689 (29%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P   P               + +    
Sbjct: 8   RPIFAWVIAILIMLVGILAI-----NNLPIEQYPKIAPP-------------QVKVRAVY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S       +TL+F +    +    +V  
Sbjct: 50  PGADAETVENSVTQIIEQQMKGIDGLMYMSSNSSAAGSASVTLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  L         ++++    +       + +  +    +D I   
Sbjct: 110 KLQSAMSSLPETVQRTGLNVEKSTSDFLMVTAFVSEDGSMDQSDIADYVATSIVDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++LR      + +S      N        G        
Sbjct: 170 EGVGGTNVFGS-SYAMRIWLDPAKLRAYNLIPSDVSSAIRSQNVQVSAGQLGTLPTNTDR 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                         I+   +  ++     +    +   +    +        +       
Sbjct: 229 VV------------INATVSVQSYLQTPEQFEDILLKTDTAGAQVRIKDVARVELGSENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +     E  G+    L          +V          
Sbjct: 277 QFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELSQNFPTGLKMVVPYDTTPFVRL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   +  ++   ++ + ++ T A+LS+ G ++ + ++
Sbjct: 337 SITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPVVILGTFAVLSVFGYSINILTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             +VL IGL VD  I+V E +     +N S   +  ++      +   I  + I +++  
Sbjct: 397 FAMVLAIGLLVDDAIIVVENVERILEENPSIQVMDATIQSMREISKVVIGIALILSVVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------S 522
            ++FF G      R FA+T+  S+++S F A+    A+ + I++ +  K           
Sbjct: 457 PMIFFGGSSGVIYRQFAVTLMTSMVLSAFIALVFTPALCVTILKRQAHKDINIQTGFFGW 516

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + I   +     +    + + ++ ++  +         + +G +   
Sbjct: 517 FNRFFYQTSRRYENFIGKTYASKLAYLAVYTGIVAVMALIFMRLPSSFVPEEDQGAVMTL 576

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       L    + ++ L       +  + E  F +      G           +K   
Sbjct: 577 VQLPAGSTLDKTNAVMDKLANYYHDKETDNIESVFTISGFGFMGSGQNSGMAFIKLKDWD 636

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +T Q+       ++  +    ++
Sbjct: 637 ERAGSENTAQSIARRAMVMNMMIPEASLI 665



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 94/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V +  V       +      Q      + L  +     +++     + +   +++
Sbjct: 256 TAGAQVRIKDVARVELGSENYQFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               R  I + +  ++ + + + + +++  + W   +     + +
Sbjct: 316 QNFPTGLKMVVPYDTTPFVRLSITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T    ++FG   N+  + A++  IG  V+D ++V + + + +     SI   D   
Sbjct: 376 VILGTFAVLSVFGYSINILTMFAMVLAIGLLVDDAIIVVENV-ERILEENPSIQVMDATI 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     +  ++   +  +PM  +GGS       FA+ +   +V++A  ++     +
Sbjct: 435 QSMREISKVVIGIALILSVVFVPMIFFGGSSGVIYRQFAVTLMTSMVLSAFIALVFTPAL 494

Query: 820 LLFIYDWR 827
            + I   +
Sbjct: 495 CVTILKRQ 502



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 68/169 (40%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   +S + + + +   ++ W      I  + L +  +L    + G+  ++    A+
Sbjct: 873  QAPILYALSILVVFLCLAALYESWSVPFAVILVIPLGVIGSLLLTKIHGLANDVYLQVAL 932

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT+IG S  + +++ +  ++   +  +  + +  I  +    L   + TS+A  + V+P+
Sbjct: 933  LTVIGLSAKNAILIIEFAKE---IQESGQTLKASIMMAARMRLRPIIMTSLAFGVGVVPL 989

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +    G     +    +  G++ +    IF      +++        +
Sbjct: 990  YIATGAGSGSQNAVGTGVLGGVLTSTFLGIFFIPMFYVWVRTLFPYKPK 1038


>gi|29654449|ref|NP_820141.1| protein translocase subunit [Coxiella burnetii RSA 493]
 gi|29541716|gb|AAO90655.1| protein translocase subunit [Coxiella burnetii RSA 493]
          Length = 622

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 149/531 (28%), Positives = 256/531 (48%), Gaps = 39/531 (7%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N  P++    +  A+    + LGLDLRGG H +L+VD    V          + +
Sbjct: 97  YSVALNLAPRTPR--WLQAIGAKPMRLGLDLRGGIHFLLDVDVGAMVKAQETGDLHTMST 154

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++  I    M   QN + + F D   ++     +                       T
Sbjct: 155 ALREARIRYTEMSSDQNGVMIHFRDQAARDQARTLLEKQFPDYR------------FEAT 202

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +   +S   + Q+  +A++Q   I+R R++++G++E  IQ+ G  +I + LPG QD 
Sbjct: 203 ASSLRGTISITALHQIQQNAVDQITTILRNRVNELGVAEPVIQQQGESQISVDLPGIQDT 262

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHL 254
           +R + ++G  A +    V   +  +           S     +    L++ +V + G  +
Sbjct: 263 ARAKDIIGKVATIRLQLVDVEHDAETASSTGTVPFGSKLYTFEKQLVLLKQQVVLKGTSI 322

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP-------------------LA 295
               ++   +  +P V +         F  +T +N+GKP                   + 
Sbjct: 323 -INASSVIGEDGRPAVRVRVSGSDVPSFNRITGENVGKPLAVVYVETQTTRHLVDGKVVT 381

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +      Q       QI+   T++ A  LA +LR+G+ P+ ++ V+ER VG  
Sbjct: 382 QHRQIERIINIATIQTALGNDFQITNLSTMDYAKNLALLLRSGAYPVPVDFVQERVVGPS 441

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG ++I+ G  +   G +L+++FM   Y  +G++AD ++ LN++  +A+LS+LGATLTLP
Sbjct: 442 LGQENIHMGVLSTEIGALLVIVFMAFYYRLFGVIADIALALNIVFIVAVLSILGATLTLP 501

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVD+N+L+NERIREE R   S   S+  G+ RA++TI D+N+T LI  +
Sbjct: 502 GIAGIVLTVGMAVDANVLINERIREELRNGMSPQASIKAGYDRAFATIVDANVTTLIVMI 561

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +LF  G G V+GFA+T  + +L SM TAI   RA++  +   ++   + I 
Sbjct: 562 ILFALGSGPVQGFAVTTTIGLLSSMVTAIFFTRAVVNLVYGRRRASRLSIG 612



 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 82/179 (45%), Gaps = 4/179 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                 +VGP + +E I  G++   I A+ +++++   ++  F + A   L L+I   + 
Sbjct: 431 DFVQERVVGPSLGQENIHMGVLSTEIGALLVIVFMAFYYRL-FGVIADIALALNIVFIVA 489

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             ++ G    L  +A ++  +G +V+  V++ +R+R+ ++     +S +  I    +   
Sbjct: 490 VLSILGATLTLPGIAGIVLTVGMAVDANVLINERIREELR---NGMSPQASIKAGYDRAF 546

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              V  ++   I ++ +   G   +  FA+    G++ +  ++IF    ++  +Y  R 
Sbjct: 547 ATIVDANVTTLIVMIILFALGSGPVQGFAVTTTIGLLSSMVTAIFFTRAVVNLVYGRRR 605



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 27/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  IL +++  I L+ ALPN   +                              + 
Sbjct: 3   RYPLWRYILLAVLIIISLIYALPNLYGEDPA---------------------------IQ 35

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                +  ++   ++++S L  + I   S+R + N + + F  +  +    D +   +
Sbjct: 36  ISAKNSAPIEAVEEKIKSTLNAQHISYLSVRPVDNTVLVRFPSTEDQLKAQDVIQAVV 93


>gi|269960742|ref|ZP_06175113.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834406|gb|EEZ88494.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1053

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 179/686 (26%), Gaps = 38/686 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G++           + ++P+  P              +       
Sbjct: 8   RPVFAWVLAILTMLAGVMSLF-----NLPVSQYPTISPTTI---------SINARYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        S        ITL+F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQNMTGLDYLRYLNSSSDAFGNATITLTFDSEADPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L ++ +   ++        +++     +       +    ++    D I       
Sbjct: 114 AMTSLPMEVQSQGIIVNKSNTSFLMVVAVYSEDPEFTENDIGDFVVTNIQDPISRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L Q   T   ++      N        G    +       
Sbjct: 174 QVQAFGSQ-YAMRVWLDPFKLTQFNLTAIDVANAIREQNAQVSSGQLGAAPAQSGQLLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     ++ +              +    I   E      +      + +         
Sbjct: 233 TISSASRLTSVA-------------EFRNIILKSEANGSNVYLKDVARVERGAESYDIKG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +   T E        L A                    S   
Sbjct: 280 QYNGFPAAGLGISLGTGANALETAEAVKERLGQLSATFPDGLKIAYPFETTPFVDASIKE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  ++   ++ + ++ T A+L   G ++   ++  +V
Sbjct: 340 VIKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLGTFAILYATGFSVNTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +        +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEDGLDPKEATKKSMGQITGALVGVGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPLSRFF 532
            G      R F+IT+  ++ +S+  AI +  A+   +++         K        +F 
Sbjct: 460 SGSTGVIYRQFSITIVAAMTLSVLVAIILTPALCASLLKKGDAEFSDKKGFFGWFNRKFD 519

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      +       + ++F+  S    +              Q  V +   +  +
Sbjct: 520 AATAGYEAGVAKMLKRTGRMLLVFAAMSAGAGWLFMNLPTSFLPDEDQGTVFSMAILPPN 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             +   E       ++   + + N              Q + + M    + +        
Sbjct: 580 STQEQTEKTLEKVRNYFLEEEKDNVASVFSVAGFSFAGQGQNMGMAFIGLKDWSEREAPG 639

Query: 653 NTEIVGPKISRELIRKGIVGVIISAI 678
           +        +          ++ +  
Sbjct: 640 SDAASLTGRAMGYFSTIKEAMVFAFA 665



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 83/244 (34%), Gaps = 6/244 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  Q        L        +++     ++    +++   
Sbjct: 258 SNVYLKDVARVERGAESYDIKGQYNGFPAAGLGISLGTGANALETAEAVKERLGQLSATF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I++ I  ++ + + + + +++  + +   +     + + + 
Sbjct: 318 PDGLKIAYPFETTPFVDASIKEVIKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N   + A++  IG  V+D +VV + +     ++   +  ++   KS+
Sbjct: 378 GTFAILYATGFSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEDGLDPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V   +      +PMA   GS       F+I +   + ++   +I +   +   
Sbjct: 436 GQITGALVGVGLTLSAVFVPMAFMSGSTGVIYRQFSITIVAAMTLSVLVAIILTPALCAS 495

Query: 823 IYDW 826
           +   
Sbjct: 496 LLKK 499



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 75/245 (30%), Gaps = 11/245 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                        +       V  S   +   +     +   N     N            
Sbjct: 776  HRMQPKDFDSWYVRNSQGEMVPFSAFATGEWTYGSPLLQRFNGLPAMNIQGGAAPGVSTG 835

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   +  MV+K            + E         ++        +S + + + +   +
Sbjct: 836  EAMAEIEAMVEKLPPGFTVNWNGISYEERLSGNQAPMLY------ALSILVVFLVLAALY 889

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +  + L +   +      G++ ++    ++LT +G +  + +++ +  ++ 
Sbjct: 890  ESWSVPFAVVLVVPLGVLGAVLAVMTRGMDNDVFFQVSLLTTVGLATKNAILIVEFAKEY 949

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
               Y       +    ++   L   + TS+A  + V+P+A+  G         +  G++ 
Sbjct: 950  ---YEKGAGLIEATLHAVRVRLRPIIMTSLAFGLGVVPLAISTGVGSAGQN-AVGTGVLG 1005

Query: 808  AASSS 812
               S+
Sbjct: 1006 GMVSA 1010


>gi|293608086|ref|ZP_06690389.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828659|gb|EFF87021.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1035

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/633 (12%), Positives = 178/633 (28%), Gaps = 47/633 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   G+L       P+  + RFPS  P               + +   
Sbjct: 8   RRPVFAWVIAIFIILFGVLSI-----PKLPIARFPSVAPPE-------------VNITAS 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   +            +      +IT +F      +     V 
Sbjct: 50  YPGATPKTINDSVITLIEREMSGVKNLLYYSATTDSSGTAEITATFKPGTNVDMAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++++  
Sbjct: 110 NKIKAVEARLPQVVRQQGLAVEASSSGFLMLVGLNSPNHRYSEVDLSDYLVRNVVEELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP++L     + + ++      N        G R L + 
Sbjct: 170 VDGVGKIQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRNNNIDIAPGRLGDRPLVNG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++  +              +         +           ++      
Sbjct: 229 QLITIPLSAQGQLENVE-------------QFKNISLKSNISGANIKLSDVADVEMGAQS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +        A        +   T +        L+          V         
Sbjct: 276 YNFAILENGKPATAAAIQLSPGANAVKTADAVKQKLEELKVNLPEGMQFSVPYDTAPFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 336 ISIEKVVHTLIEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTIMLLTGYSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +     +   S I    +      +
Sbjct: 396 MFGMVLAIGIIVDDAIVVVENVERIMATEGLSPKEATSKAMTEITSPIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +    G      R F ITM +SIL S F A+++  A+   +++            + F 
Sbjct: 456 PMALASGSVGIIYRQFTITMSVSILFSAFLALTLTPALCATLLKPVDANHQKKGFYAWFD 515

Query: 533 LIPDCIAIQFM------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              D +  ++               I  +           +     +  +          
Sbjct: 516 RSFDKVTKKYEAILLKVVKHTIPTLIIFVVITGLTFAGMKYWPTAFMPEEDQGWFLTSFQ 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
            P D +  R+            +  D + N  +
Sbjct: 576 LPSDATAERTTKIVKDFEGHLNEQSDVKSNISI 608



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/246 (16%), Positives = 89/246 (36%), Gaps = 14/246 (5%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + LS V       Q  + +                   ++V     ++   +++   +P
Sbjct: 260 NIKLSDVADVEMGAQSYNFAILENGKPATAAAIQLSPGANAVKTADAVKQKLEELKVNLP 319

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLIL 702
                +         +  I K +  +I + + + I +++     R+    A+ A   L  
Sbjct: 320 EGMQFSVPYDTAPFVKISIEKVVHTLIEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL-- 377

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
               T     L G   N+  +  ++  IG  V+D +VV + +     + T  +S ++   
Sbjct: 378 --LGTFTIMLLTGYSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLSPKEATS 433

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++ E     +  ++      LPMA+  GSV      F I M+  I+ +A  ++ +   +
Sbjct: 434 KAMTEITSPIIGITLVLAAVFLPMALASGSVGIIYRQFTITMSVSILFSAFLALTLTPAL 493

Query: 820 LLFIYD 825
              +  
Sbjct: 494 CATLLK 499



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 88/266 (33%), Gaps = 6/266 (2%)

Query: 553  SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            S+  +           +             +++ +    +    +L  + I   +     
Sbjct: 748  SMYINDFPNQGRMQQVIVQANAKSRMHLKDIISLKVAGANGQLVSLSEVVIPQWNKLPQQ 807

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              +          G         + +++    I  L      E  G  +  +     ++ 
Sbjct: 808  YNRYNGRPSLSIAGVPNIGVSSGDAMREMEKLIAKLPQGIGYEWTGISLQEKQSESQMIF 867

Query: 673  VI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +I +S + + + +   ++ W   L  +  + L I   +    L G+  ++     ++T+I
Sbjct: 868  LIALSMLVVFLVLAALYESWSIPLSVMLVVPLGIFGAVLAIMLRGMPNDIFFKIGLITII 927

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
            G S  + +++ +  +    L    ++  +    +    L   + TS+A    V+P+ +  
Sbjct: 928  GLSAKNAILIVEFAK---MLKEEGMTLIEAAVAAAKLRLRPILMTSLAFTCGVIPLVIAT 984

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIA 816
            G+        +  G+     S+  +A
Sbjct: 985  GAS-SETQHALGTGVFGGMISATILA 1009


>gi|146291202|ref|YP_001181626.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           putrefaciens CN-32]
 gi|145562892|gb|ABP73827.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella putrefaciens CN-32]
          Length = 1044

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/627 (11%), Positives = 162/627 (25%), Gaps = 44/627 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++PS  P   +                  
Sbjct: 8   RPIFAWVIALIIMLAGILSI-----RSLPVSQYPSIAPPTVV---------ISANYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        ITL+F      +    +V   LQG
Sbjct: 54  AKIVEDSVTQVIEQRMTGIDHLRYITSTSDSFGNASITLTFNAEADPDIAQVQVQNKLQG 113

Query: 122 VNSKLNVDPKKNLLVTTTEKE-ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + L  + +   +          ++L             + +  +     D +      
Sbjct: 114 AMTLLPQEVQSQGVNVNKSSSGGFLLLLGFVSTDGSLDKSDIADYVGSNVQDPMSRVPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP +L Q   T+  +       N        G           
Sbjct: 174 GEIQLFGAQ-YAMRIWLDPLKLTQYNLTSIDVVSAIRSQNAQVSSGQLGGTPSVAGQELN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +      F      I          
Sbjct: 233 ATVSAQSRL-------------QTPEEFRKIILKSDTSGAIVFLGDVARIELGSESYSVV 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +   T E      A ++         +           S  
Sbjct: 280 SSYNGKPATGLAIKLATGANALDTAEAVRAKIAEMKPFFPQGLDVVYPYDTTPFVEKSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +++++ +   +  L+   ++ + ++ T A+LS  G ++   ++  +
Sbjct: 340 GVVHTLIEAVVLVFLIMYLFLQNFRATLIPTIAVPVVLLGTFAILSATGFSINTLTMFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    + +  S   +      +    +    +T     V + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERVMSEEGLSPLEATRKSMDQITGALVGIGLTLSAVFVPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDIN 526
             G      R F++T+  ++ +S+  A+ +  A+   +          I        +  
Sbjct: 460 MSGSTGVIYRQFSVTIVSAMALSVMVALILTPALCATMLKPLKKGHGHIETGFFGWFNRG 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +A    R     +    L    +   +         + +G +    +  
Sbjct: 520 FDKLTNRYESSVASIIKRGFRVMMIYVALVVAVAWIFMRMPTAFLPDEDQGILFTQAILP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDG 613
                      L+ +    ++      
Sbjct: 580 TNASQESTIKVLDKVSEHFMAEDGVRS 606



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 77/271 (28%), Gaps = 14/271 (5%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +       V  S             +   N     N           
Sbjct: 774  QYRMQPGDLDSWYVRNNNGDMVPFSAFARGTWEYGSPRLERFNGLPAMNIQGATAAGFST 833

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++VK+            + E              +  + I  +  L+   + 
Sbjct: 834  GAAMDIMEDLVKQLPPGFGIEWNGLSYEERLSGNQAP----ALYALSI-LVVFLVLAALY 888

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L I   L      G+  ++     +LT +G +  + +++ +  ++ 
Sbjct: 889  ESWSVPFAVVLVVPLGIIGALLAMNGRGLPNDVFFQVGLLTTVGLATKNAILIVEFAKEY 948

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
               Y       +    ++   L   + TS+A  + V+P+A+    G     +    +  G
Sbjct: 949  ---YEKGAGLVEATLHAVRVRLRPILMTSLAFGLGVVPLAISTGVGSGSQNAIGTGVLGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYD---WRAKNAR 832
            ++ +    IF      + +      R + A+
Sbjct: 1006 MMSSTFLGIFFVPLFFVIVERIFSKRERKAK 1036



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 81/250 (32%), Gaps = 6/250 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       +   +           L        +++     +     ++ 
Sbjct: 256 TSGAIVFLGDVARIELGSESYSVVSSYNGKPATGLAIKLATGANALDTAEAVRAKIAEMK 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                + I   +  +I + + + + +++  + +   L     + +
Sbjct: 316 PFFPQGLDVVYPYDTTPFVEKSIEGVVHTLIEAVVLVFLIMYLFLQNFRATLIPTIAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T    +  G   N   + A++  IG  V+D +VV + +     +    +S  +   
Sbjct: 376 VLLGTFAILSATGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLSPLEATR 433

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+++  G  V   +      +PMA   GS       F++ +   + ++   ++ +   +
Sbjct: 434 KSMDQITGALVGIGLTLSAVFVPMAFMSGSTGVIYRQFSVTIVSAMALSVMVALILTPAL 493

Query: 820 LLFIYDWRAK 829
              +     K
Sbjct: 494 CATMLKPLKK 503


>gi|212634064|ref|YP_002310589.1| SecD/SecF/SecDF export membrane protein [Shewanella piezotolerans
           WP3]
 gi|212555548|gb|ACJ28002.1| SecD/SecF/SecDF export membrane protein [Shewanella piezotolerans
           WP3]
          Length = 299

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/285 (26%), Positives = 146/285 (51%), Gaps = 7/285 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           +AR+    +S++  + SI ++F+HG N+G+DF GG+   V  +  +  + +   L +   
Sbjct: 11  KARYLSSVLSLIIMLSSIGIIFSHGFNWGLDFTGGVVTEVKVDANIQAAQISQLLAAHSE 70

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            ++S  +      +++R       S         + +    +     + N+ IVGP+I +
Sbjct: 71  QEVSVISAGEPGRWVLRY------SQVDAESSTNIARVFAPLTENVEVLNSSIVGPQIGQ 124

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + ++++ + +L+Y+  RF+W  A GA+  L  D+   L  F+L  +EFNLT +
Sbjct: 125 ELAEQGGLALLVAMLCILVYLSFRFEWRLASGALLALFHDVVFVLAVFSLTQMEFNLTIL 184

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AAVL ++GYS+ND +V+ DR+R+ +      ++  ++   ++  T  R++ TS    I+V
Sbjct: 185 AAVLAILGYSLNDSIVIADRIREVLIAKPK-MAIDEICSSAVKATFSRTMVTSGTTLITV 243

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +   GG  +  F+I M  GI++   SSI +   +   +     
Sbjct: 244 AALWFMGGGPLQGFSIAMFLGILIGTVSSISVGTCLPELLKVKAE 288


>gi|15609723|ref|NP_217102.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           H37Rv]
 gi|148662425|ref|YP_001283948.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           H37Ra]
 gi|148823781|ref|YP_001288535.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           F11]
 gi|215404534|ref|ZP_03416715.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           02_1987]
 gi|215412359|ref|ZP_03421119.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           94_M4241A]
 gi|215446835|ref|ZP_03433587.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           T85]
 gi|218754323|ref|ZP_03533119.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis GM
           1503]
 gi|219558589|ref|ZP_03537665.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           T17]
 gi|253798333|ref|YP_003031334.1| preprotein translocase subunit secF [Mycobacterium tuberculosis KZN
           1435]
 gi|254232705|ref|ZP_04926032.1| protein-export membrane protein secF [Mycobacterium tuberculosis C]
 gi|254366787|ref|ZP_04982830.1| protein-export membrane protein secF [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254551637|ref|ZP_05142084.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260201714|ref|ZP_05769205.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           T46]
 gi|289444124|ref|ZP_06433868.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           T46]
 gi|289553624|ref|ZP_06442834.1| preprotein translocase subunit secF [Mycobacterium tuberculosis KZN
           605]
 gi|289570757|ref|ZP_06450984.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           T17]
 gi|289746378|ref|ZP_06505756.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           02_1987]
 gi|289758716|ref|ZP_06518094.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           T85]
 gi|289762757|ref|ZP_06522135.1| export membrane protein secF [Mycobacterium tuberculosis GM 1503]
 gi|297635196|ref|ZP_06952976.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis KZN
           4207]
 gi|297732188|ref|ZP_06961306.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis KZN
           R506]
 gi|298526059|ref|ZP_07013468.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776860|ref|ZP_07415197.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu001]
 gi|306780624|ref|ZP_07418961.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu002]
 gi|306785387|ref|ZP_07423709.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu003]
 gi|306789987|ref|ZP_07428309.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu004]
 gi|306794068|ref|ZP_07432370.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu005]
 gi|306798465|ref|ZP_07436767.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu006]
 gi|306804345|ref|ZP_07441013.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu008]
 gi|306807615|ref|ZP_07444283.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu007]
 gi|306969817|ref|ZP_07482478.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu009]
 gi|306972974|ref|ZP_07485635.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu010]
 gi|307080685|ref|ZP_07489855.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu011]
 gi|307085272|ref|ZP_07494385.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu012]
 gi|313659522|ref|ZP_07816402.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis KZN
           V2475]
 gi|2498900|sp|Q50635|SECF_MYCTU RecName: Full=Protein-export membrane protein secF
 gi|1478226|emb|CAB01257.1| PROBABLE PROTEIN-EXPORT MEMBRANE PROTEIN SECF [Mycobacterium
           tuberculosis H37Rv]
 gi|124601764|gb|EAY60774.1| protein-export membrane protein secF [Mycobacterium tuberculosis C]
 gi|134152298|gb|EBA44343.1| protein-export membrane protein secF [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148506577|gb|ABQ74386.1| protein export protein SecF [Mycobacterium tuberculosis H37Ra]
 gi|148722308|gb|ABR06933.1| protein-export membrane protein secF [Mycobacterium tuberculosis
           F11]
 gi|253319836|gb|ACT24439.1| preprotein translocase subunit secF [Mycobacterium tuberculosis KZN
           1435]
 gi|289417043|gb|EFD14283.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           T46]
 gi|289438256|gb|EFD20749.1| preprotein translocase subunit secF [Mycobacterium tuberculosis KZN
           605]
 gi|289544511|gb|EFD48159.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           T17]
 gi|289686906|gb|EFD54394.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           02_1987]
 gi|289710263|gb|EFD74279.1| export membrane protein secF [Mycobacterium tuberculosis GM 1503]
 gi|289714280|gb|EFD78292.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           T85]
 gi|298495853|gb|EFI31147.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214786|gb|EFO74185.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu001]
 gi|308326558|gb|EFP15409.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu002]
 gi|308329980|gb|EFP18831.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu003]
 gi|308333597|gb|EFP22448.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu004]
 gi|308337624|gb|EFP26475.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu005]
 gi|308341288|gb|EFP30139.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu006]
 gi|308345937|gb|EFP34788.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu007]
 gi|308349097|gb|EFP37948.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu008]
 gi|308352626|gb|EFP41477.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu009]
 gi|308357665|gb|EFP46516.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu010]
 gi|308361606|gb|EFP50457.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu011]
 gi|308365180|gb|EFP54031.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           SUMu012]
 gi|326904200|gb|EGE51133.1| protein-export membrane protein secF [Mycobacterium tuberculosis
           W-148]
 gi|328458103|gb|AEB03526.1| preprotein translocase subunit secF [Mycobacterium tuberculosis KZN
           4207]
          Length = 442

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 133/296 (44%), Gaps = 11/296 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    G+S      +I  +   G  +GIDFKGG  +           V      +L  
Sbjct: 62  GRRRLWFGVSGAIVAVAIASIVFRGFTFGIDFKGGTTVSFPRGSTQVAQVEDVYYRALGS 121

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659
              S        +  V+++ +   S    ++ + + +          P     +   V  
Sbjct: 122 EPQSVVIVGAGASATVQIRSETLTSDQTAKLRDALFEAFGPKGTDGQPSKQAISDSAVSE 181

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++ +K ++ +++  + + +YI +R++ Y  + AIT ++ D+T T G ++L G E  
Sbjct: 182 TWGGQITKKAVIALVVFLVLVALYITVRYERYMTISAITAMLFDLTVTAGVYSLVGFEVT 241

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D V+V+D++ +N     +TT  +F +  + +IN+T  RS+ TS+
Sbjct: 242 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTFMRSINTSL 301

Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + VL +      + G   +   A+    GI++   SSIF A P+L+ + +   
Sbjct: 302 IGVLPVLALMVVAVWLLGVGTLKDLALVQLIGIIIGTYSSIFFATPLLVTLRERTE 357


>gi|326560958|gb|EGE11323.1| RND system efflux pump AcrB [Moraxella catarrhalis 7169]
 gi|326563806|gb|EGE14057.1| RND system efflux pump AcrB [Moraxella catarrhalis 46P47B1]
 gi|326567341|gb|EGE17456.1| RND system efflux pump AcrB [Moraxella catarrhalis BC1]
 gi|326571538|gb|EGE21553.1| RND system efflux pump AcrB [Moraxella catarrhalis BC7]
          Length = 1051

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 204/689 (29%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P   P               + +    
Sbjct: 8   RPIFAWVIAILIMLVGILAI-----NNLPIEQYPKIAPP-------------QVKVRAVY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S       +TL+F +    +    +V  
Sbjct: 50  PGADAETVENSVTQIIEQQMKGIDGLMYMSSNSSAAGSASVTLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  L         ++++    +       + +  +    +D I   
Sbjct: 110 KLQSAMSSLPETVQRTGLNVEKSASDFLMVTAFVSEDGSMDQSDIADYVATSIVDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++LR      + +S      N        G        
Sbjct: 170 EGVGGTNVFGS-SYAMRIWLDPAKLRAYNLIPSDVSSAIRSQNVQVSAGQLGTLPTNTDR 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                         I+   +  ++     +    +   +    +        +       
Sbjct: 229 VV------------INATVSVQSYLQTPEQFEDILLKTDTAGAQVRIKDVARVELGSENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +     E  G+    L          +V          
Sbjct: 277 QFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELSQNFPTGLKMVVPYDTTPFVRL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   +  ++   ++ + ++ T A+LS+ G ++ + ++
Sbjct: 337 SITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPVVILGTFAVLSVFGYSINILTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             +VL IGL VD  I+V E +     +N S   +  ++      +   I  + I +++  
Sbjct: 397 FAMVLAIGLLVDDAIIVVENVERILEENPSIQVMDATIQSMREISKVVIGIALILSVVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------S 522
            ++FF G      R FA+T+  S+ +S F A+    A+ + I++ +  K           
Sbjct: 457 PMIFFGGSSGVIYRQFAVTLMTSMALSAFIALVFTPALCVTILKRQAHKDINIQTGFFGW 516

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + I   +     +    + + ++ ++  +         + +G +   
Sbjct: 517 FNRFFYQTSRRYENFIGKTYASKLAYLAVYTGIVAVMALIFMRLPSSFVPEEDQGAVMTL 576

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       L    + ++ L       +  + E  F +      G           +K   
Sbjct: 577 VQLPAGSTLDKTNAVMDKLANYYHDKETDNIESVFTISGFGFMGSGQNSGMAFIKLKDWD 636

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +T Q+       ++  +    ++
Sbjct: 637 ERAGSENTAQSIARRAMVMNMMIPEASLI 665



 Score = 81.7 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V +  V       +      Q      + L  +     +++     + +   +++
Sbjct: 256 TAGAQVRIKDVARVELGSENYQFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               R  I + +  ++ + + + + +++  + W   +     + +
Sbjct: 316 QNFPTGLKMVVPYDTTPFVRLSITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T    ++FG   N+  + A++  IG  V+D ++V + + + +     SI   D   
Sbjct: 376 VILGTFAVLSVFGYSINILTMFAMVLAIGLLVDDAIIVVENV-ERILEENPSIQVMDATI 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     +  ++   +  +PM  +GGS       FA+ +   + ++A  ++     +
Sbjct: 435 QSMREISKVVIGIALILSVVFVPMIFFGGSSGVIYRQFAVTLMTSMALSAFIALVFTPAL 494

Query: 820 LLFIYDWR 827
            + I   +
Sbjct: 495 CVTILKRQ 502



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 68/169 (40%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   +S + + + +   ++ W      I  + L +  +L    + G+  ++    A+
Sbjct: 873  QAPILYALSILVVFLCLAALYESWSVPFAVILVIPLGVIGSLLLTKIHGLANDVYLQVAL 932

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT+IG S  + +++ +  ++   +  +  + +  I  +    L   + TS+A  + V+P+
Sbjct: 933  LTVIGLSAKNAILIIEFAKE---IQESGQTLKASIMMAARMRLRPIIMTSLAFGVGVVPL 989

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +    G     +    +  G++ +    IF      +++        +
Sbjct: 990  YIATGAGSGSQNAVGTGVLGGVLTSTFLGIFFIPMFYVWVRTLFPYKPK 1038


>gi|326575182|gb|EGE25110.1| RND system efflux pump AcrB [Moraxella catarrhalis CO72]
          Length = 1051

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/689 (11%), Positives = 204/689 (29%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           ++++P   P               + +    
Sbjct: 8   RPIFAWVIAILIMLVGILAI-----NNLPIEQYPKIAPP-------------QVKVRAVY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K       +   S       +TL+F +    +    +V  
Sbjct: 50  PGADAETVENSVTQIIEQQMKGIDGLMYMSSNSSAAGSASVTLTFENGTDPDTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  L         ++++    +       + +  +    +D I   
Sbjct: 110 KLQSAMSSLPETVQRTGLNVEKSASDFLMVTAFVSEDGSMDQSDIADYVATSIVDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++LR      + +S      N        G        
Sbjct: 170 EGVGGTNVFGS-SYAMRIWLDPAKLRAYNLIPSDVSSAIRSQNVQVSAGQLGTLPTNTDR 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                         I+   +  ++     +    +   +    +        +       
Sbjct: 229 VV------------INATVSVQSYLQTPEQFEDILLKTDTAGAQVRIKDVARVELGSENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +     E  G+    L          +V          
Sbjct: 277 QFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELSQNFPTGLKMVVPYDTTPFVRL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   +  ++   ++ + ++ T A+LS+ G ++ + ++
Sbjct: 337 SITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPVVILGTFAVLSVFGYSINILTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             +VL IGL VD  I+V E +     +N S   +  ++      +   I  + I +++  
Sbjct: 397 FAMVLAIGLLVDDAIIVVENVERILEENPSIQVMDATIQSMREISKVVIGIALILSVVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------S 522
            ++FF G      R FA+T+  S+ +S F A+    A+ + I++ +  K           
Sbjct: 457 PMIFFGGSSGVIYRQFAVTLMTSMALSAFIALVFTPALCVTILKRQAHKDINIQTGFFGW 516

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +           + I   +     +    + + ++ ++  +         + +G +   
Sbjct: 517 FNRFFYQTSRRYENFIGKTYASKLAYLAVYTGIVAVMALIFMRLPSSFVPEEDQGAVMTL 576

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       L    + ++ L       +  + E  F +      G           +K   
Sbjct: 577 VQLPAGSTLDKTNAVMDKLANYYHDKETDNIESVFTISGFGFMGSGQNSGMAFIKLKDWD 636

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +T Q+       ++  +    ++
Sbjct: 637 ERAGSENTAQSIARRAMVMNMMIPEASLI 665



 Score = 81.7 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V +  V       +      Q      + L  +     +++     + +   +++
Sbjct: 256 TAGAQVRIKDVARVELGSENYQFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               R  I + +  ++ + + + + +++  + W   +     + +
Sbjct: 316 QNFPTGLKMVVPYDTTPFVRLSITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T    ++FG   N+  + A++  IG  V+D ++V + + + +     SI   D   
Sbjct: 376 VILGTFAVLSVFGYSINILTMFAMVLAIGLLVDDAIIVVENV-ERILEENPSIQVMDATI 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     +  ++   +  +PM  +GGS       FA+ +   + ++A  ++     +
Sbjct: 435 QSMREISKVVIGIALILSVVFVPMIFFGGSSGVIYRQFAVTLMTSMALSAFIALVFTPAL 494

Query: 820 LLFIYDWR 827
            + I   +
Sbjct: 495 CVTILKRQ 502



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 68/169 (40%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   +S + + + +   ++ W      I  + L +  +L    + G+  ++    A+
Sbjct: 873  QAPILYALSILVVFLCLAALYESWSVPFAVILVIPLGVIGSLLLTKIHGLANDVYLQVAL 932

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT+IG S  + +++ +  ++   +  +  + +  I  +    L   + TS+A  + V+P+
Sbjct: 933  LTVIGLSAKNAILIIEFAKE---IQESGQALKASIMMAARMRLRPIIMTSLAFGVGVVPL 989

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +    G     +    +  G++ +    IF      +++        +
Sbjct: 990  YIATGAGSGSQNAVGTGVLGGVLTSTFLGIFFIPMFYVWVRTLFPYKPK 1038


>gi|294624099|ref|ZP_06702844.1| protein export protein SecD [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601599|gb|EFF45591.1| protein export protein SecD [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 594

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 136/504 (26%), Positives = 241/504 (47%), Gaps = 39/504 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  ++VD+   +   L  +++++R+ L+   I
Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ R+  N I +S  +    +     +               +  L    + + I++
Sbjct: 163 PYRSVERRADNSIQVSLGEGANADAARVALAK------------AQPTLTYDVSGQNIAV 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            + +  + Q+ S AIEQ++  +R R++ +G+SE TIQR G  RI+++LPG QD +  ++L
Sbjct: 211 KVPEAELKQIASGAIEQNLTTLRNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRL 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  N+      G                  L+  +  ++G  +  A+ 
Sbjct: 271 IGATASLEFRAVVDGNADDAVRSGNIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
           + D      V     +  G R F                    T   +       +  + 
Sbjct: 331 STDQNGMPAVAVTLNNVAGQRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A   GK   +       A  LA +L++GSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALSPTRIAGVFGKNFQTTGLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G +   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 451 RGVTAVVYSFLFTLVFFTIYYRVFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A  TI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRLGVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISI 506
           G ++GFA+TM + I    FTAI++
Sbjct: 571 GPLKGFALTMMIGIFAWRFTAITV 594



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 87/249 (34%), Gaps = 4/249 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +        G  + V+    +    +    E   +              +    +Q  
Sbjct: 350 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTT 409

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         K   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 410 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 469

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F       L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 470 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 528

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++L    +  +  I     +  G  +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 529 ELRL---GVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 585

Query: 807 VAASSSIFI 815
               ++I +
Sbjct: 586 AWRFTAITV 594



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 32/123 (26%), Gaps = 34/123 (27%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    W   L  ++  +  L ALPN   +    +                          
Sbjct: 2   LEFPRWKYFLILLVLAVSALYALPNVYQKDPSVQ-------------------------- 35

Query: 61  DEDDFVNGFLQMYSDELRSFLKKE----GIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                         D LRS +  E    GI   ++ +  + + +     + +    D + 
Sbjct: 36  ----ITASRGAQLDDALRSRIDGELKSAGIMPKAITKEGDSLMVRLPSLQAQTRANDVLR 91

Query: 117 LFL 119
             L
Sbjct: 92  QQL 94


>gi|94501959|ref|ZP_01308467.1| protein-export membrane protein SecF [Oceanobacter sp. RED65]
 gi|94425901|gb|EAT10901.1| protein-export membrane protein SecF [Oceanobacter sp. RED65]
          Length = 307

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/288 (31%), Positives = 161/288 (55%), Gaps = 5/288 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM  R     +SI   + S+  L   GL  G+DF GG  + V      D++ +R +L 
Sbjct: 7   INFMGGRKIAAFLSIALIVISLGSLIFQGLKLGLDFTGGTLIEVAYESSADVNSIREDLV 66

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +    D++ Q+F  E++ LVR+Q      +      E++            ++ +E VG 
Sbjct: 67  AAGYKDVAVQHFGSEEDVLVRMQEAYRADLGD----EVLSTLRANTDEDIQLRRSEFVGS 122

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  EL   G + ++++   ++IY+  RF++ F++GA+  L+ D+   LG F+L  I+F+
Sbjct: 123 QVGEELRDDGGIAMLLALAVVMIYVAARFQFKFSVGAVAALMHDVIIVLGIFSLLQIDFD 182

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA+L +IGYS+ND +VV DR+R+N ++    +   D++++S+  TLGR++ TS+  
Sbjct: 183 LNVLAALLAVIGYSLNDTIVVSDRIRENFRII-RQMQAIDIVNRSLTNTLGRTLVTSLTT 241

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + +L +   GG  I +FA+ +  G+VV   SSI++A+ ILL +   R
Sbjct: 242 LLVLLALLFVGGESIHNFALALTIGVVVGTYSSIYVASNILLAMNITR 289


>gi|296100425|ref|YP_003610571.1| multidrug efflux transport protein EefB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295054884|gb|ADF59622.1| multidrug efflux transport protein EefB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 1036

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/683 (10%), Positives = 190/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P + I                 
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----RTLPVAQYPDVAPPS-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + L         S       IT++F      +    +V   +Q
Sbjct: 54  SAQTLENSVTQVIEQQLTGLDNLLYFTSTSSSDGSVSITVTFEQGTDPDTAQVQVQNKVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + +++ +     +   +++         + + + +  ++    D +   +  
Sbjct: 114 QAESRLPTEVQQSGITVEKSQSNFLLIMGVYDKTDTASSSDIADWLVSNMQDPLARVDGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVSAGKIGALPSSNAQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDQFKNIIVKSQSNGAVVHISDVARVEMGSEDYTST 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 AKLNGHPAAGMAVMLSPGANALNTATAVKEKIAEFKKSMPEGYDVAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIILVVVVMYLFLQNIRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSR 530
           FGG      R F++T+  ++L+S+  A+++  A+   I       +     + +      
Sbjct: 460 FGGSTGVIYRQFSVTIISAMLLSVVVALTLTPALCGSILSHTAPHKKGFFGAFNRFYSKT 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                + +     R+    V   +L       +L   G     + +G I +         
Sbjct: 520 EHGYQNKVLRALRRSGGMLVIYVLLCGAMGFAMLKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +        ++   ++ +  +    F +      G           +K         +T
Sbjct: 580 STRTAEVSRQVREWFLTKEKANTNVIFTIEGFSFSGSGQNAGMAFVSLKNWSERKGDENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   +    +    I  +
Sbjct: 640 AQAIALRATQELSTIRDATIFAM 662



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 94/248 (37%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +S V       +    + +        +  +     +++     ++    +  + +P 
Sbjct: 261 VHISDVARVEMGSEDYTSTAKLNGHPAAGMAVMLSPGANALNTATAVKEKIAEFKKSMPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + I +++ +++  +     L     + + +  T
Sbjct: 321 GYDVAYPKDSTEFIKISVEDVIQTLFEAIILVVVVMYLFLQNIRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LPMA +GGS       F++ +   ++++   ++ +   +   I 
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMLLSVVVALTLTPALCGSIL 498

Query: 825 DWRAKNAR 832
              A + +
Sbjct: 499 SHTAPHKK 506



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 76/246 (30%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +               + G  S   ++G   + ++ +   G S              
Sbjct: 786  VRGSDSTMTPFSAFATTRWEYGPESLVRYNGSAAYEIQGENASGASSGTAMSKMEQLANN 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    + +++  + +     +   W   +  I  + L
Sbjct: 846  LPSGSTWAWSGLSLQEKLASGQAMSLYALSILVVFLCLA---ALYESWSVPISVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +       +L G+  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GVLGAAIAASLRGLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AKVAEGYSLTRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVTPLAIATGAGANSRVAIGTGIIGGTLAATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|239817792|ref|YP_002946702.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Variovorax paradoxus S110]
 gi|239804369|gb|ACS21436.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Variovorax paradoxus S110]
          Length = 1054

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/630 (11%), Positives = 167/630 (26%), Gaps = 51/630 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G +        Q  + ++P   P               +V+ V  
Sbjct: 8   RPIFAWVIALFILVGGSVAI-----TQLPISQYPPVAPPA-------------IVINVAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+      +   +    G+         +    IT+SF      +     V  
Sbjct: 50  PGASAQTLEDSVLSVIEREMNGSPGLIYMESVAQADGTGTITISFEAGTNPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L     +  +     +   ++    + D      +       R  + ++   
Sbjct: 110 RLSRATPRLPAAVTQQGVRVDKSRNNFLMFVMLSSDNPNFDPVALGDYAARNVVPELQRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L+    +   ++      N        G        
Sbjct: 170 VGVGQAQLFGS-ENAMRIWIDPNKLQGYNLSATDVNNAIRAQNAQVSSGTIGDLPNIPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    +++ +              +    +                 +       
Sbjct: 229 AIAATVVVNGQLANVD-------------QFKDIVLRANTDGSTVRLKDVARVELGGQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   + +      A L           +   +      
Sbjct: 276 ATSARLNGVPAVGIGVQPTPNGNALQSAKAIRAKMAELERFFPQGVKWNIPYDSSRFVQI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV IV+F+ +   ++ ++    + + ++ T A+L  +G ++ + ++
Sbjct: 336 SITEVVKTLLEAIALVFIVMFLFLQNWRYTIIPTIVVPIALLGTFAMLLAMGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   V 
Sbjct: 396 FGMVLVIGIVVDDAIVVVENVERIMSEEGLSPLEATRKAMKQISGAIIGVTVVLISVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           L FF    G   R F+  M  SI  S F A+S+  A+   +           +       
Sbjct: 456 LAFFAGSTGNIYRQFSAVMVTSIAFSAFMALSLTPALCATLLKPVEAGHHHEKTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    RA  + V    +        L         + +G I + V
Sbjct: 516 NRGFTRTAKGYESVVARILRRAARYLVIYVAIIGAVVFTYLRLPSSFLPAEDQGNIIVNV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                       S ++ ++   +       
Sbjct: 576 QLPPGATQERALSVMQQVEGFILKQPEVQS 605



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 78/210 (37%), Gaps = 6/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                 G+++   + +     ++    P     N      +  +  I + +  ++ +   
Sbjct: 291 VQPTPNGNALQSAKAIRAKMAELERFFPQGVKWNIPYDSSRFVQISITEVVKTLLEAIAL 350

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + I +++  + W + +     + + +  T       G   N+  +  ++ +IG  V+D +
Sbjct: 351 VFIVMFLFLQNWRYTIIPTIVVPIALLGTFAMLLAMGFSINVLTMFGMVLVIGIVVDDAI 410

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           VV + +     +    +S  +   K++ +  G  +  ++      +P+A + GS      
Sbjct: 411 VVVENV--ERIMSEEGLSPLEATRKAMKQISGAIIGVTVVLISVFVPLAFFAGSTGNIYR 468

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            F+  M   I  +A  ++ +   +   +  
Sbjct: 469 QFSAVMVTSIAFSAFMALSLTPALCATLLK 498



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 69/217 (31%), Gaps = 8/217 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L +              +          GD+         + +       L      E  
Sbjct: 797  LSAFATTKWVKGATQTVRYNGYPAIRISGDAAQGYSTGAAMAEMEKLAGQLPQGFGFEWT 856

Query: 658  GPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
            G     +L   + IV    + +A+ + +   ++ W   L  I  + L +   L    L  
Sbjct: 857  GQSREEKLAGSQAIVLYGFAILAVFLCLAALYESWSIPLSVILVVPLGVLGVLLATMLRA 916

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               ++     ++T+IG S  + +++ +  +    L        +    + +      + T
Sbjct: 917  YSNDVYFQVGLITIIGLSAKNAILIIEFAKD---LQAQGKGIVESALAAAHLRFRPIIMT 973

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
            S+A  + V+P+ +    G +   +    +  G+V   
Sbjct: 974  SLAFGLGVVPLVLASGAGSASQRAIGTGVLGGMVTGT 1010


>gi|215431541|ref|ZP_03429460.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           EAS054]
 gi|289754704|ref|ZP_06514082.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           EAS054]
 gi|289695291|gb|EFD62720.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           EAS054]
          Length = 442

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 133/296 (44%), Gaps = 11/296 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    G+S      +I  +   G  +GIDFKGG  +           V      +L  
Sbjct: 62  GRRRLWFGVSGAIVAVAIASIVFRGFTFGIDFKGGTMVSFPRGSTQVAQVEDVYYRALGS 121

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659
              S        +  V+++ +   S    ++ + + +          P     +   V  
Sbjct: 122 EPQSVVIVGAGASATVQIRSETLTSDQTAKLRDALFEAFGPKGTDGQPSKQAISDSAVSE 181

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++ +K ++ +++  + + +YI +R++ Y  + AIT ++ D+T T G ++L G E  
Sbjct: 182 TWGGQITKKAVIALVVFLVLVALYITVRYERYMTISAITAMLFDLTVTAGVYSLVGFEVT 241

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D V+V+D++ +N     +TT  +F +  + +IN+T  RS+ TS+
Sbjct: 242 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTFMRSINTSL 301

Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + VL +      + G   +   A+    GI++   SSIF A P+L+ + +   
Sbjct: 302 IGVLPVLALMVVAVWLLGVGTLKDLALVQLIGIIIGTYSSIFFATPLLVTLRERTE 357


>gi|153832493|ref|ZP_01985160.1| AcrB protein [Vibrio harveyi HY01]
 gi|148871288|gb|EDL70160.1| AcrB protein [Vibrio harveyi HY01]
          Length = 1053

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 178/686 (25%), Gaps = 38/686 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G++           + ++P+  P                      
Sbjct: 8   RPVFAWVLAILTMLAGVMSLF-----NLPVSQYPTISPTTI---------SISARYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        S        ITL+F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQNMTGLDYLRYLNSSSDAFGNATITLTFDSEADPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L ++ +   ++        +++     +       +    ++    D I       
Sbjct: 114 AMTSLPMEVQSQGIIVNKSNTSFLMVVAVYSEDPDFTENDIGDFVVTNIQDPISRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L Q   T   ++      N        G    +       
Sbjct: 174 QVQAFGSQ-YAMRVWLDPFKLTQFNLTAIDVANAIREQNAQVSSGQLGAAPAQSGQLLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     ++ +              +    I   E      +      + +         
Sbjct: 233 TISSASRLTSVA-------------EFRNIILKSEANGSNVYLKDVARVERGAESYDIKG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +   T E        L A                    S   
Sbjct: 280 QYNGFPAAGLGISLGTGANALETAEAVKERLGQLSATFPDGLKIAYPFETTPFVDASIKE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  ++   ++ + ++ T A+L   G ++   ++  +V
Sbjct: 340 VIKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLGTFAILYATGFSVNTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +        +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEDGLDPKEATKKSMGQITGALVGVGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPLSRFF 532
            G      R F+IT+  ++ +S+  AI +  A+   +++         K        +F 
Sbjct: 460 SGSTGVIYRQFSITIVAAMTLSVLVAIILTPALCASLLKKGDAEFSDKKGFFGWFNRKFD 519

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      +       + ++F+  S    +              Q  V +   +  +
Sbjct: 520 AATAGYEAGVAKMLKRTGRMLLVFAAMSAGAGWLFMNLPTSFLPDEDQGTVFSMAILPPN 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             +   E       ++   + + N              Q + + M    + +        
Sbjct: 580 STQEQTEKTLEKVRNYFLEEEKDNVKSVFSVAGFSFAGQGQNMGMAFIGLKDWSEREAPG 639

Query: 653 NTEIVGPKISRELIRKGIVGVIISAI 678
           +        +          ++ +  
Sbjct: 640 SDAASLTGRAMGYFSTIKEAMVFAFA 665



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 83/244 (34%), Gaps = 6/244 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  Q        L        +++     ++    +++   
Sbjct: 258 SNVYLKDVARVERGAESYDIKGQYNGFPAAGLGISLGTGANALETAEAVKERLGQLSATF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I++ I  ++ + + + + +++  + +   +     + + + 
Sbjct: 318 PDGLKIAYPFETTPFVDASIKEVIKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N   + A++  IG  V+D +VV + +     ++   +  ++   KS+
Sbjct: 378 GTFAILYATGFSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEDGLDPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V   +      +PMA   GS       F+I +   + ++   +I +   +   
Sbjct: 436 GQITGALVGVGLTLSAVFVPMAFMSGSTGVIYRQFSITIVAAMTLSVLVAIILTPALCAS 495

Query: 823 IYDW 826
           +   
Sbjct: 496 LLKK 499



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 75/245 (30%), Gaps = 11/245 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                        +       V  S   +   +     +   N     N            
Sbjct: 776  HRMQPKDFDSWYVRNSQGEMVPFSAFATGEWTYGSPLLQRFNGLPAMNIQGGAAPGVSTG 835

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   +  MV+K            + E         ++        +S + + + +   +
Sbjct: 836  EAMAEIEAMVEKLPPGFTVNWNGISYEERLSGNQAPMLY------ALSILVVFLVLAALY 889

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +  + L +   +      G++ ++    ++LT +G +  + +++ +  ++ 
Sbjct: 890  ESWSVPFAVVLVVPLGVLGAVLAVMTRGMDNDVFFQVSLLTTVGLATKNAILIVEFAKEY 949

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
               Y       +    ++   L   + TS+A  + V+P+A+  G         +  G++ 
Sbjct: 950  ---YEKGAGLIEATLHAVRVRLRPIIMTSLAFGLGVVPLAISAGVGSAGQN-AVGTGVLG 1005

Query: 808  AASSS 812
               S+
Sbjct: 1006 GMVSA 1010


>gi|330974467|gb|EGH74533.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 1047

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 181/692 (26%), Gaps = 55/692 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPSLPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEDELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIYTLNYKDGAASKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPAS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSAVHLSDVARVAVGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVEQRLTELSVNFPEGVGFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +     ++  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAKEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGKFTHRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V        S       + Q+ +    + +      + L +          +     K 
Sbjct: 575 DVQLPPGATRS---RTDLTAQLLENYMLSREATGAVTMLLGFSFSGMGENAGLAFPTLKD 631

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +E     +         +    L    ++ V
Sbjct: 632 WSERGKGQSAAEEAAAFNQHFAGLGDGTVMAV 663



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R +E    +++   P 
Sbjct: 262 VHLSDVARVAVGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVEQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVGFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAKEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTSVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLF-IYDWRAKN 830
            A    + +     ++ +   R K 
Sbjct: 1009 ATLLGVVLVPIFFVWVLSVLRRKP 1032


>gi|78059727|ref|YP_366302.1| hydrophobe/amphiphile efflux-1 pump, HAE1 [Burkholderia sp. 383]
 gi|77964277|gb|ABB05658.1| Hydrophobe/amphiphile efflux-1 pump, HAE1 [Burkholderia sp. 383]
          Length = 1063

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/682 (11%), Positives = 176/682 (25%), Gaps = 50/682 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+         +  + ++P+  P               + ++ + 
Sbjct: 8   RPIFAWVIAIVLMLAGVASIF-----KMPIAQYPTIAPPT-------------IQIQANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F+     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFSPGTNPDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +  T      ++    N D       + +  +    +D +   
Sbjct: 110 KLSLATPNLPQVVQQLGMQVTKSSSNWLMWFAFNSDDGSMSKEDLTNYVASHVLDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q L        +    DP +L     T   +S      N    G   G    +   
Sbjct: 170 NGVGQTLLLGSQ-FSMRIWLDPVKLTNYSLTPTDVSAAITQQNVQIAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +                
Sbjct: 229 MLQATITESTLL-------------RTPEQFGNILLKVNQDGSQVRLKDVGRAALGSENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L        +             
Sbjct: 276 TFDTKYMGQPTAGLGIQLATGANALATATALRAKIDELSKYFPHGLVVHYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++ + G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMGVAGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   F R+R    G        S   L  +       F     + V   +      
Sbjct: 511 FFGWFNRTFDRSRDRYTGGVNHVIRRSGRWLVIYL----AVFIAVGVMFVRLPKSFLPDE 566

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            +  +  +             K       Y           +  V          +    
Sbjct: 567 DQGYMFMIVQTPSGSTQETTGKTLDNINTYLTTTEKDVVDSVFTVNGFSFAGRGQNAGLV 626

Query: 654 TEIVGPKISRELIRKGIVGVII 675
              + P   R+   + +  +I 
Sbjct: 627 FVKLKPYEHRQRSDQKVQALIG 648



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        L        +++A    L     ++++  
Sbjct: 258 SQVRLKDVGRAALGSENYTFDTKYMGQPTAGLGIQLATGANALATATALRAKIDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   + +         R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVHYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     + G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMGVAGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 83/257 (32%), Gaps = 10/257 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +   A   V  S   +   S     +   N         +       
Sbjct: 777  PFRMTPEDMNIWYVRNSAGGMVPFSAFSTGHWSYGSPKLERYNGVSSIEIQGQAAEGKST 836

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   +  +  K    I    T  + + +       ++    + +++  + +     + 
Sbjct: 837  GQAMAAMEALASKLPEGIGYSWTGLSFQEIQSGSQAPILYA--ISILVVFLCLA---ALY 891

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L +   L    L G+E ++     +LT +G S  + +++ +  R+ 
Sbjct: 892  ESWSIPFSVIMVVPLGVVGALLATMLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARE- 950

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                  ++       ++    L   + TS+A  + VLP+A+    G +   +    +  G
Sbjct: 951  -LQTRENMGPVRAAIEAARLRLRPILMTSLAFMLGVLPLAISNGAGSASQHAIGTGVIGG 1009

Query: 805  IVVAASSSIFIAAPILL 821
            ++ A   +IF+     +
Sbjct: 1010 MITATFLAIFMIPMFFV 1026



 Score = 45.1 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 53/521 (10%), Positives = 134/521 (25%), Gaps = 56/521 (10%)

Query: 12   SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             ++  + + IA+     +      P              +G   ++++            
Sbjct: 540  WLVIYLAVFIAVGVMFVRLPKSFLPDED-----------QGYMFMIVQ-TPSGSTQETTG 587

Query: 72   MYSDELRSFL--KKEGIGVFSMRQIQ----------NKITLSFADSRFKENIADKVTLFL 119
               D + ++L   ++ +                     + +       ++    KV   +
Sbjct: 588  KTLDNINTYLTTTEKDVVDSVFTVNGFSFAGRGQNAGLVFVKLKPYEHRQRSDQKVQALI 647

Query: 120  QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +  +      +++      I  + +    D  ++       E +     Q+    +
Sbjct: 648  GRTFAHYSQYKDA-MVIPFNPPSIPELGTAAGFDFELTDNAGLGHEALMAARGQLLGMAA 706

Query: 180  TIQRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                L   R        Q   + D  +   L  T A +     +                
Sbjct: 707  KDPALALVRPNGLNDTPQYKVDIDREKANALGVTAAAIDQTFSIAW-------------- 752

Query: 235  DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                    V + +++ G        +  P    P     +    +               
Sbjct: 753  ----ASQYVNNFLDMDGRIKKVYVQSDAPFRMTPEDMNIWYVRNSAGGMVPFSAFSTGHW 808

Query: 295  AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           V +  I    A+         A    A      +      +  + + +
Sbjct: 809  SYGSPKLERYNGVSSIEIQGQAAEGKSTGQAMAAMEALASKLPEGIGYSWTGLSFQEIQS 868

Query: 355  DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
                        AI   +V + L  +             + L V+  L    L G    +
Sbjct: 869  GS----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVVGALLATMLRGLENDV 924

Query: 415  PSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
                G++  +GL+  + IL+ E  RE + R+N     +           I  +++  ++ 
Sbjct: 925  FFQVGLLTTVGLSAKNAILIVEFARELQTRENMGPVRAAIEAARLRLRPILMTSLAFMLG 984

Query: 474  TVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             + L      G  +       +   ++ + F AI ++    
Sbjct: 985  VLPLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|256825355|ref|YP_003149315.1| protein translocase subunit secF [Kytococcus sedentarius DSM 20547]
 gi|256688748|gb|ACV06550.1| protein translocase subunit secF [Kytococcus sedentarius DSM 20547]
          Length = 406

 Score =  186 bits (472), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/314 (22%), Positives = 130/314 (41%), Gaps = 8/314 (2%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L      + F+  R     +S +    ++  LF  G+N G++F GG    V  
Sbjct: 3   FAQFGNDLYTGRRQVDFIGRRKIWYLVSAVLLALTLVGLFGRGINLGLEFTGGTDFRVAG 62

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                    R++                                    +         E 
Sbjct: 63  VSDTTGYEERASDALSDSVGAGEAVRSSIIGGDTVRVQAASLEGGTQAMDAARGALAEEF 122

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
              +      +VGP   +E+ +K ++ + +  + +   + + F+ W  AL A+  L+ D+
Sbjct: 123 DVPAQDVAGSLVGPSWGQEVSQKALMALGVFLVLVSGVLALYFRTWKMALAALVALLHDL 182

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM--KLYTTSISFRDLID 762
             T+G FAL G E +  +V   LT++GYS+ D VVV+D++R+N+       + ++    +
Sbjct: 183 IFTVGAFALAGFEVSPASVIGFLTILGYSLYDTVVVFDKVRENVDDARKHKTKTYSQAAN 242

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +IN+TL RS+ TS+ A + V  + V      G   +   ++ +  GI V   SSIFIA 
Sbjct: 243 MAINQTLVRSINTSVVALLPVGAILVVGFAKLGPGTLLDLSLALFIGIAVGTFSSIFIAT 302

Query: 818 PILLFIYDWRAKNA 831
           P+L+ + +  A+  
Sbjct: 303 PLLVQLREGEAEIK 316


>gi|168702848|ref|ZP_02735125.1| Hydrophobe/amphiphile efflux-1 HAE1 [Gemmata obscuriglobus UQM
           2246]
          Length = 1187

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/572 (12%), Positives = 153/572 (26%), Gaps = 44/572 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   GL         +  + ++P   P                      
Sbjct: 9   RPVLAWVISLIILLFGLAALF-----RLPIAQYPEVAPPTVT---------VSCTYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V+  +    +   + ++       +     +  +T++FA           V   +Q 
Sbjct: 55  AQVVSNSVAAPIELQVNGVEGMLYMSSNSGNDGSYSLTVTFALGTDLNMAQVLVQNRVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +V        ++++           +  S     Q  D+I   E   
Sbjct: 115 ATPLLPEEVQRQGVVVRKRTPDILLIANLFSPDDSRDQLYLSNFATVQVRDEIARIEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP +L     + + +       N        G          QY
Sbjct: 175 DVTVFGQQDYSMKAWLDPDKLAANSLSASDVVNAMREQNVQVAAGRVGAEPATPGVAFQY 234

Query: 242 LVEDKVEI--------------------------SGIHLNGATANFDPKTHKPVVDISFD 275
            +     +                           G   +            P      D
Sbjct: 235 TLNALGRLETVEQFRNIVVKSGATASSQAGSASTGGDSASATNGGMSAVPTSPTPAPPSD 294

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
            +            +            L                +     +        L
Sbjct: 295 ALLRPIVRLGDVARVELTARTQDITNTLDGKASVGLAIFALPGANALDVADRVKAKIEQL 354

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           +    P     V          S      T      LV IV+ + +   +  ++    + 
Sbjct: 355 KKRFPPGVEVAVRYDTTPFIEQSVEEVYNTLFDATLLVAIVVLLFLQDWRAMILPMIDVP 414

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           ++++ TLA++ + G +L   ++ G+VL IG+ VD  I+V E +     +  +   +    
Sbjct: 415 VSLVGTLAVMYVFGFSLNNLTLFGLVLAIGIVVDDAIVVLENVERWIAQGLNARDATLKA 474

Query: 456 FSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMI 512
            S     I    +      +   F G   G   R FA+T+ ++++IS   A+++  +   
Sbjct: 475 MSEITGPIIAITLVLSSVFLPSAFLGGVTGQFFRQFALTISVAMMISALNAMTLTPSRAA 534

Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
            I R ++  + +       +     I     R
Sbjct: 535 AIFRGREKTAHETTETLPRWGWALLIGYAGYR 566



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/203 (18%), Positives = 86/203 (42%), Gaps = 9/203 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              +E +KK+    V ++   +T     +   E+        ++ AI +L+++     W 
Sbjct: 348 KAKIEQLKKRFPPGVEVAVRYDTTPFIEQSVEEVYNTLFDATLLVAIVVLLFLQ---DWR 404

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  +  + + +  TL    +FG   N   +  ++  IG  V+D +VV + +    +  
Sbjct: 405 AMILPMIDVPVSLVGTLAVMYVFGFSLNNLTLFGLVLAIGIVVDDAIVVLENV---ERWI 461

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
              ++ RD   K+++E  G  +  ++      LP A  GG        FA+ ++  ++++
Sbjct: 462 AQGLNARDATLKAMSEITGPIIAITLVLSSVFLPSAFLGGVTGQFFRQFALTISVAMMIS 521

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
           A +++ +       I+  R K A
Sbjct: 522 ALNAMTLTPSRAAAIFRGREKTA 544



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 61/170 (35%), Gaps = 14/170 (8%)

Query: 668  KGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGI-------EFN 719
              I   + + + + + +  +   W      I  + + I   +G    F +       E N
Sbjct: 989  TAIYAFMGAVVLVYLVLAGLYNSWSLPFAIILVVPMCILSAIGGIYGFALLVPAVAPEIN 1048

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            +      + L+G +  + +++ +   +  +        R+ I +S+   L   V TS A 
Sbjct: 1049 IFTQIGFVVLVGLACKNAILIVE-FAEQQRHEGKG--LREAILESVRLRLRPIVMTSFAF 1105

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             + V+P+ +    G  +  +  I +  G++      + +       I  W
Sbjct: 1106 ILGVVPLVLAEGAGAEMRRTLGIAVFSGMLGVTFFGLALTPVFYYLIERW 1155



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 143/540 (26%), Gaps = 56/540 (10%)

Query: 3    NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                   L  +    GLL        ++     P              +G  +L++ V  
Sbjct: 647  RQLLRGALIVLAIYAGLLALTYTGFARTPTGYIPPQD-----------QG--YLLVSVQL 693

Query: 63   DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
             D  +             +         +    N +T++             V       
Sbjct: 694  PDAASAQRSRAV---MQRIDDIVRAQPGVS---NTLTVT---------GQSFVLGATGSN 738

Query: 123  NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
               + V  +              ++ ++   +++    +  + I+     +   S    +
Sbjct: 739  FGTMFVILEPFEARKGDISRNGFMILRDLNAKILREVQDAQVLILPPPPVRGLGSAGGYR 798

Query: 183  RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
             +   R  +   G Q   R    L      +          +  +  +    D    + +
Sbjct: 799  IMVEDRGDLGPEGLQ---RETNALIREINQNPALGASFTVYRANVPQLFVDVDRVRCRQM 855

Query: 243  VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                 ++           +    ++   +          +           +       V
Sbjct: 856  GVPLADVFATLQVYLGGTYVNDFNRFGRNWQVTAQADAPYRMSADTIRNLRVRNDRGEMV 915

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAG---ILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                V      +G   I    T   A     LA     G+    +    ER++ +  G +
Sbjct: 916  PLGSVAKIQDVTGPVVIQRYNTFPAAAVNGNLAPGTSTGTGIQLVTEAAERSMSSQTGYE 975

Query: 360  SIYKGTCAIVAGLVLIVLFM----IVLYGKWGLVADFSIFLNVILTLALLSL-------- 407
                       G   I  FM    +V     GL   +S+   +IL + +  L        
Sbjct: 976  WTDISFLQNQEGSTAIYAFMGAVVLVYLVLAGLYNSWSLPFAIILVVPMCILSAIGGIYG 1035

Query: 408  -------LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
                   +   + + +  G V+ +GLA  + IL+ E   ++  + + +  ++        
Sbjct: 1036 FALLVPAVAPEINIFTQIGFVVLVGLACKNAILIVEFAEQQRHEGKGLREAILESVRLRL 1095

Query: 461  STIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
              I  ++   ++  V L      G    R   I +   +L   F  +++       I R+
Sbjct: 1096 RPIVMTSFAFILGVVPLVLAEGAGAEMRRTLGIAVFSGMLGVTFFGLALTPVFYYLIERW 1155


>gi|157737064|ref|YP_001489747.1| hydrophobe/amphiphile efflux-1 family protein [Arcobacter butzleri
           RM4018]
 gi|157698918|gb|ABV67078.1| hydrophobe/amphiphile efflux-1 family protein [Arcobacter butzleri
           RM4018]
          Length = 1042

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/675 (11%), Positives = 189/675 (28%), Gaps = 42/675 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  +  +L  +I   G++           ++++P  +P               +++   
Sbjct: 8   KNPVFAGVLSIIIFLTGIIAMF-----NLPIEQYPRVLPP-------------QIIVSTS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L   +     +   +     +    I + F      ++    V 
Sbjct: 50  YPGASADTIAKTVAAPLEEQINGAKNMLYMNSLAEDSGRLSINVFFEVGTNPDDAKIDVN 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   +K+    ++  +V        +             +I  S   +   ++ +  
Sbjct: 110 NRVQAALAKMPEQVQRQGVVVGERSPSILQFIMLESPNKTFDSIYLSNYALLNLVESLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +     +        +    DP +L +    T  +       NN           +   
Sbjct: 170 VKGVGDAMIFGAKDYSIRIWMDPLKLSKYSLATTDVITAIKEQNNQYAAGKIAAEPIAQK 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y +                       +    +                 I      
Sbjct: 230 QMYTYTIRTPQR-------------FENPEQFGNIVIRANEDGSSLRLKDIATIELGAND 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            ++  +   T +                    +   +     
Sbjct: 277 YSVTTRLNNAPSIPIGIFLQSGANSLETADAIKKALEEASKTFPEDMTYSIPYDSTDFIT 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++++F+ +   +  ++   ++ ++++   A +  LG ++ L +
Sbjct: 337 ASIHEVVKTFVEALILVILIIFLFLQSWRATIIPFIAVPVSIVGAFAGMYALGFSINLLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E I     + ++   +  +        +    +      + 
Sbjct: 397 LFGLVLAIGIVVDDAIIVIENIERHMEEGKTPKEAAFIAMKEVTGALIAIILVLGAVFIP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFF 532
           + F G   G   R FAIT+ +S++IS F A+++  A+ +  +   K          +  F
Sbjct: 457 VAFMGGLSGEMYRQFAITIVISVVISGFVALTLTPALCVKVLKNKKHEPKGFFKWFNDSF 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSIC--SICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                     ++       IS+L       I       +  G+          +      
Sbjct: 517 AKATQGYSVIVKKSIRFSLISVLLYAGLLFISWDMFKSMKTGLLPDEDQGTIFVFGFNPP 576

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              +  +LE  +  +          N +    Y    S  ++  +  + K        + 
Sbjct: 577 GYSMSKSLELSEEINKIIAEDPSVNNIITLAGYDFTTSAQRSHTVATIIKLKDWSKRPNP 636

Query: 651 IQNTEIVGPKISREL 665
            Q  + +  K S++L
Sbjct: 637 EQEAQALLAKFSKQL 651



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +     + + I          G   NL  +  ++  IG  V+D ++V + +    
Sbjct: 363 SWRATIIPFIAVPVSIVGAFAGMYALGFSINLLTLFGLVLAIGIVVDDAIIVIENI---E 419

Query: 749 KLYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +      + ++    ++ E    L   +    A FI V  M    G +   FAI +   +
Sbjct: 420 RHMEEGKTPKEAAFIAMKEVTGALIAIILVLGAVFIPVAFMGGLSGEMYRQFAITIVISV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           V++   ++ +   + + +   +    +
Sbjct: 480 VISGFVALTLTPALCVKVLKNKKHEPK 506



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/175 (13%), Positives = 62/175 (35%), Gaps = 7/175 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFAL 713
                    +++        I   + + + +  +  +W   L  +  +   I   +    +
Sbjct: 855  WTGTAYQEKQIGGSSAQAFIFGIVFLFLILCALYERWLLPLSVVLAVPFAIFGAILATNI 914

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
              ++ N+     +L L G +  + +++ +     ++     I   D   ++    L   +
Sbjct: 915  RSLDNNIYFQIGLLVLAGLAAKNAILIVEFA---IQKQKEGIKLVDAALEAAKVRLRPII 971

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             TS+A  + V+P+A+    G +   S    +  G++ A   +I       + I  
Sbjct: 972  MTSLAFTVGVMPLAISSGAGAASKHSIGTGVVGGMLTATFIAILFIPLFFVLISR 1026


>gi|21242235|ref|NP_641817.1| RND multidrug efflux transporter MexF [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21107658|gb|AAM36353.1| RND multidrug efflux transporter MexF [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 1058

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 63/547 (11%), Positives = 155/547 (28%), Gaps = 35/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +P   +  +P  +P +              V     
Sbjct: 10  RPIFAAVLSIIIFAAGLIA-----MPLLPISEYPEVVPPSVQ---------VRAVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVVTVTFKPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +   +++  S     +  D++     
Sbjct: 114 SQAQARLPEDVRRQGVTTQKQSPTLTMVVHLTSPKGKYNSLYLSNYATLKVKDELSRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P ++     T + +       N        G   + +    
Sbjct: 174 VGQIQIFGAGDYAMRIWLNPDKVAARGLTASDVVAAIREQNVQVSAGQLGAEPMPNKSDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  ++                +    +                 +         
Sbjct: 234 LLSINAQGRLTTEE-------------EFGNIVIRSGNSGEIVRLSDVARLELGAGNYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +      A L                      S 
Sbjct: 281 RSQLDNQNAVGMGVFQSPGANAIELSDAVRAKMAELERQFPQDMAWSAAYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   S+ G
Sbjct: 341 SAVVHTLLEAVLLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++         + L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAMLLKSHDAPKDGPSRLIDRLFGWL 520

Query: 537 CIAIQFM 543
                  
Sbjct: 521 FRPFNRF 527



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTLLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+      G  V     I +  G+
Sbjct: 958  -LEMHGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVFGHGAGAEVRSVTGITVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      +F+     + +  W  +  
Sbjct: 1017 LGVTLFGLFLTPVFYVALRKWVTRRG 1042



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 56/143 (39%), Gaps = 14/143 (9%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 425 E---GLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASS----SIFIAAPILLFIYD 825
           ++       S+ ++  +   +  
Sbjct: 478 ISTVISAINSLTLSPALAAMLLK 500


>gi|241664999|ref|YP_002983359.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Ralstonia
           pickettii 12D]
 gi|240867026|gb|ACS64687.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ralstonia pickettii 12D]
          Length = 1050

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 66/631 (10%), Positives = 169/631 (26%), Gaps = 52/631 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G +        Q  + ++P+  P               +++    
Sbjct: 8   RPVFAWVLALFIILAGAISI-----TQLPISQYPTIAPP-------------SIIITATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN----KITLSFADSRFKENIADKVT 116
                  L +  +  +   +   +G+              +IT++F            V 
Sbjct: 50  PGANAKTLDESVTSIIEQEMNGADGLLYMESVSQGGNGQAQITVTFKAGTDPALAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V ++L     +  +     +   ++ +           +     I R  +++I  
Sbjct: 110 NRLKRVEARLPSQVTQQGVQVDKARSNFLLFATLASTDGKMDPVALGDYISRNVLNEIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q +        +    DP++L     T   +       N        G       
Sbjct: 170 VPGVGQAILFGT-ERAMRVWIDPAKLVGYKLTPTDVYNAIRAQNALVSAGTIGDLPSVSD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  + +++                +    +   +             +      
Sbjct: 229 QPLAATVVVEGQLTTTE-------------QFGNIVLVAKPDGSLVRVKDVARLELGGQT 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +    I+          +   T +        L           V         
Sbjct: 276 YSTSARINGQPISAIGVQLSPTGNALGTAKAVKAKLEELSKYFPAGVEYKVPYDTSKFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   ++ LV    + ++++   A ++ +G ++ + +
Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLLFLQNIRYTLVPSIVVPISLLGAFATMNAMGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +      +      +    I    +  +   +
Sbjct: 396 MFGLVLAIGILVDDAIVVVENVERIMAEEGLPPREATRKAMGQITGAIIGITLVLMAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FF G      R F+++M  SI  S   A+++  A+   +           +      
Sbjct: 456 PMAFFSGSVGAIYRQFSLSMVSSIFFSALMALTLTPALCSTLLKPIEKGSHHEKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +    +        +     +   + V    L        L         + +G I   
Sbjct: 516 FNRMFSTTTNRYQSFVERMLKKTFRYMVIYVALIVAVVFLFLRLPSSFLPTEDQGYIVTN 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +        +     ++ ++      +  + 
Sbjct: 576 IQLPPGASANRTLEVIKQVENYYKQEKAVEN 606



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 5/143 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + L     + + +          G   N+  +  ++  IG  V+D +VV + +     
Sbjct: 363 IRYTLVPSIVVPISLLGAFATMNAMGFSINVLTMFGLVLAIGILVDDAIVVVENV--ERI 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  R+   K++ +  G  +  ++      +PMA + GSV      F++ M   I 
Sbjct: 421 MAEEGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVSSIF 480

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
            +A  ++ +   +   +     K
Sbjct: 481 FSALMALTLTPALCSTLLKPIEK 503



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 66/179 (36%), Gaps = 8/179 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G  +  +        +  +S +A+ + +   ++ W   
Sbjct: 837  DAMAEMERLAAKLPAGIGYEWTGQSLQEKASGSQAPALYALSLLAVFLVLAALYESWSIP 896

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               I  + L +   L    L  +  ++     ++ ++G S  + +++ +  +    L   
Sbjct: 897  AAVILVVPLGVLGALLGVTLRAMPDDVYFKVGLIAVVGLSAKNAILIIEFAKD---LQAQ 953

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA 809
              S  D   ++++      + TS A  + VLP+A+  G+      +    +  G++ A 
Sbjct: 954  GKSLIDATLEAVHLRFRPIIMTSFAFILGVLPLAIATGASSASQRAIGTGVMGGMITAT 1012


>gi|91227586|ref|ZP_01261890.1| acridine efflux pump [Vibrio alginolyticus 12G01]
 gi|269967988|ref|ZP_06182027.1| acridine efflux pump [Vibrio alginolyticus 40B]
 gi|91188479|gb|EAS74772.1| acridine efflux pump [Vibrio alginolyticus 12G01]
 gi|269827424|gb|EEZ81719.1| acridine efflux pump [Vibrio alginolyticus 40B]
          Length = 1053

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/690 (10%), Positives = 179/690 (25%), Gaps = 46/690 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G++           + ++P+  P             + + +    
Sbjct: 8   RPVFAWVLAILTMLAGVMSLF-----NLPVSQYPTISP-------------TTITISARY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F      +    +V  
Sbjct: 50  PGASAKTVEDSVTQVIEQNMTGLDYLRYLSSSSDAFGNATITLTFDSEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L ++ +   +V        +++     +       +    ++    D I   
Sbjct: 110 KLQLALTSLPMEVQNQGIVVNKSNTAFLMVVAVYSEDPDFTENDIGDFVVTNIQDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP +L Q   T   ++      N        G    ++  
Sbjct: 170 TGVGQVQAFGAQ-YAMRVWLDPFKLTQFNLTAIDVANAISEQNAQVSSGQLGAAPAQEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S +              +    I   +      +      + +     
Sbjct: 229 LLNATISSASRLSSVE-------------EFQDIILKSDASGSNVYLKDVARVERGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    S     +   T          L A                    
Sbjct: 276 DIRGQYNGFPASGLGISLGTGANALETANAVKERLEQLSATFPEGLQIAYPFETTPFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++++ +   +  ++   ++ + ++ T A+L   G ++   ++
Sbjct: 336 SIQEVVKTLLEAILLVFLIMYLFLQNFRATIIPTIAVPVVLLGTFAILYATGFSVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    +        +      +    +    +T     V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMHEDGLEPKEATKKSMGQITGALIGVGLTLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPL 528
           + F  G      R F+IT+  ++ +S+  AI +  A+   +++         K       
Sbjct: 456 MAFMSGSTGVIYRQFSITIVAAMTLSVLVAIILTPALCATLLKKGDAELLEKKGFFGWFN 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +F  +         +       + ++F   S    +              Q  V +   
Sbjct: 516 RKFDAMTAGYETGVAKLLKRTGRMLVVFLAMSAGAGWLFMNLPTSFLPDEDQGTVFSMAI 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +  +  +   E        F   D + N              Q + + M    + +    
Sbjct: 576 LPPNSTQEQTEKTLEKMRDFYLVDEKDNVKSVFSVAGFSFAGQGQNMGMAFIGLKDWSER 635

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAI 678
                        +          ++ +  
Sbjct: 636 EAPGADAASITGRAMGYFSTIKEALVFAFA 665



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 87/246 (35%), Gaps = 6/246 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +   V L  V       +  DI  Q      + L        +++     ++   ++++ 
Sbjct: 256 SGSNVYLKDVARVERGAESYDIRGQYNGFPASGLGISLGTGANALETANAVKERLEQLSA 315

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
             P               +  I++ +  ++ + + + + +++  + +   +     + + 
Sbjct: 316 TFPEGLQIAYPFETTPFVKASIQEVVKTLLEAILLVFLIMYLFLQNFRATIIPTIAVPVV 375

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T       G   N   + A++  IG  V+D +VV + +     ++   +  ++   K
Sbjct: 376 LLGTFAILYATGFSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEDGLEPKEATKK 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
           S+ +  G  +   +      +PMA   GS       F+I +   + ++   +I +   + 
Sbjct: 434 SMGQITGALIGVGLTLSAVFVPMAFMSGSTGVIYRQFSITIVAAMTLSVLVAIILTPALC 493

Query: 821 LFIYDW 826
             +   
Sbjct: 494 ATLLKK 499



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 72/240 (30%), Gaps = 7/240 (2%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  K      V   +   +            G    Q FDG     ++    PG S  + 
Sbjct: 778  MQPKDFDSWYVRNAKGEMVPFSAFASGEWTYGSPLLQRFDGLPAMNIQGGAAPGVSTGEA 837

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                    +                      +      + +++     L+   +   W  
Sbjct: 838  MEEIEAMVEKLPEGFTVNWNGISYEERLSGNQAPMLYALSILVVF---LVLAALYESWSV 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                +  + L +   +       ++ ++    ++LT +G +  + +++ +  +     Y 
Sbjct: 895  PFAVVLVVPLGVLGAVLAVMTRSMDNDVFFQVSLLTTVGLATKNAILIVEFAKDY---YE 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                  +    ++   L   + TS+A  + V+P+A+  G         +  G++    S+
Sbjct: 952  KGAGLIEATLHAVRVRLRPIIMTSLAFGLGVVPLAISSGVGSAGQN-AVGTGVLGGMISA 1010


>gi|288940014|ref|YP_003442254.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Allochromatium vinosum DSM 180]
 gi|288895386|gb|ADC61222.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Allochromatium vinosum DSM 180]
          Length = 1053

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/564 (12%), Positives = 160/564 (28%), Gaps = 40/564 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++  +GL+      L Q  + +FP  +P               + +    
Sbjct: 9   RPRLAIVISVVLTLVGLVA-----LTQLPVAQFPDIVPP-------------QVSVSTSY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      L S +     +         +    +T++FA     +     V  
Sbjct: 51  PGASAAVVESTVAQPLESRINGVDNMLYMKSSSNNDGSYSLTVTFALGTDPDINTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                 ++L  + K+  L    +    + +      +     +  S       ID +   
Sbjct: 111 RANLAMAQLPEEVKRQGLTVKKQSSAMLQVVALYSPKNSYDGLFLSNYAAINVIDTLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +      +   +    D  RL  L  T + +       N        G + +    
Sbjct: 171 PGVGEVSQFGPLDYSMRIWLDSDRLTALGLTPSDVVSAIQSQNVQAAVGRIGAQPMTSDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  ++ +  +S +              +    +        R        +       
Sbjct: 231 QFQITLQTQGRLSDVE-------------EFERILVRANPDGSRILVSDVGRVELGAKQS 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +        L           V          
Sbjct: 278 DAVSRLDGRPTAAMAIYLAPGANAVSVADGVDAAMQKLAERFPDDLDYAVVYDTTDFVKA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + +I TLA L L+G +L   S+
Sbjct: 338 SLEKVVHTLFEAFVLVILVVFLFLGSWRATLIPLIAVPVALIGTLAFLLLIGFSLNTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +      +    I    +  L   + 
Sbjct: 398 LAMVLAIGIVVDDAIVVVENVERLMEEEGLSPREAAKKAMGQITGPIIAITLVLLSVFLP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G   + FA  +  S+LIS   A+++  A+   +++    +   +  +     
Sbjct: 458 VAFIPGITGQLFQQFAAVVAFSMLISAINALTLSPALCALLLKPTHHQRGIMRYVMGGID 517

Query: 534 IPDCIAIQFMRARFWGVGISILFS 557
                    +R       + ++  
Sbjct: 518 RVRDGYAAVVRRLVRFSLLVLVLI 541



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 94/239 (39%), Gaps = 6/239 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +S V       +  D   +        +        ++V+    ++   +K+ E  P   
Sbjct: 264 VSDVGRVELGAKQSDAVSRLDGRPTAAMAIYLAPGANAVSVADGVDAAMQKLAERFPDDL 323

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLG 709
                       +  + K +  +  + + +++ +++    W   L  +  + + +  TL 
Sbjct: 324 DYAVVYDTTDFVKASLEKVVHTLFEAFVLVILVVFLFLGSWRATLIPLIAVPVALIGTLA 383

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  L G   N  ++ A++  IG  V+D +VV + +     +    +S R+   K++ +  
Sbjct: 384 FLLLIGFSLNTISLLAMVLAIGIVVDDAIVVVENV--ERLMEEEGLSPREAAKKAMGQIT 441

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           G  +  ++      LP+A      G +   FA  +AF ++++A +++ ++  +   +  
Sbjct: 442 GPIIAITLVLLSVFLPVAFIPGITGQLFQQFAAVVAFSMLISAINALTLSPALCALLLK 500



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 62/166 (37%), Gaps = 9/166 (5%)

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G   +++    +  Y+++      W      + ++ + +   +    +  +  +L A   
Sbjct: 867  GKTPIVLGLAVLFAYLFLVGLYESWSMPTVVLLSVTVGVLGAMVALLIARLANDLYAQVG 926

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG +  + +++ +   +      +  S  +         +   + TS A  + ++P
Sbjct: 927  LVVLIGLASKNAILIVEFAMEQRA---SGRSILEAAVTGARLRIRAVLMTSFAFILGLVP 983

Query: 786  MAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +  G   +   +    +  G++ AA   IF+   + +     R 
Sbjct: 984  LILASGAGEASQRAVGTAVFGGMLAAALIGIFLIPMLYVVFQRLRE 1029


>gi|241766032|ref|ZP_04763951.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax delafieldii 2AN]
 gi|241363981|gb|EER59250.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax delafieldii 2AN]
          Length = 1052

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/698 (10%), Positives = 183/698 (26%), Gaps = 41/698 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +           L+++P+  P                V     
Sbjct: 8   RPIFAWVIAIIIMLAGAMSI-----KTLPLEQYPNIAPPRV---------SISAVYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L        +      ++ TL+F      +    +V   LQ 
Sbjct: 54  AKTVEESVTQVIEQQLKGLDNLIYMGSTSDASGSSRTTLTFNAGTNIDVAQVQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   +  T      +++            ++    I    +D I   +   
Sbjct: 114 AMSRLPPAVQSRGVTVTKGGSDYLMIITFTSPDPSVTQVDIGDYISSNLVDVISRIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP++L +     + +       N        G            
Sbjct: 174 DVLTLGTG-YAMRVWLDPAKLEKYALMPSDIGNAINAQNAQVSAGQLGALPAVGEQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 I      +    
Sbjct: 233 TITARSKL-------------QSKEEFEQIVLKSAADGAAVRLKDVARIELGAENLTITS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +      A L+                     S   
Sbjct: 280 RLNGQPGAGMGVVLADSANAMAVADAVNAKIAELQPFFPYQLKPFTSYDTTPFVSASIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV++V+++ +   +  L+   ++ + ++ T  +LS  G ++   ++ G+V
Sbjct: 340 VVKALLEAMVLVVLVMYLFLQNFRATLIPAIAVPVVLLGTFGVLSAAGFSINTLTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +     +     +    +T     + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMAEITPALVGIALTLSAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
           GG      R F+IT+  ++++S+  A+++  A+   +       ++    +         
Sbjct: 460 GGSTGVIYRQFSITIVSAMVLSVLVALTLTPALCATLLKPIAKGQHSPFGAPRKGIAGWI 519

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA--NRPV 589
                    +F R                  ++  + L  G      ++L      N   
Sbjct: 520 DRFFVGFNHRFDRTADGYQRGVGGVVRRGKRMMLVYLLICGGMAVLFLRLPTSFLPNEDQ 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               V+  L                + +          +       +    +    +   
Sbjct: 580 GAVSVQITLPPGSSNARLQAVMAQVQKYFAAQPDVISFNSITGSSGDQSSARGFVRLTNW 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           + +               K +  +  + I +L+   +R
Sbjct: 640 SQRKRPDQSADAIARKATKDLAAIRDARIFVLLPPAVR 677



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   I+ +        +  +     +++A    +     ++    P 
Sbjct: 260 VRLKDVARIELGAENLTITSRLNGQPGAGMGVVLADSANAMAVADAVNAKIAELQPFFPY 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                T           I + +  ++ + + +++ +++  + +   L     + + +  T
Sbjct: 320 QLKPFTSYDTTPFVSASIEEVVKALLEAMVLVVLVMYLFLQNFRATLIPAIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ E
Sbjct: 380 FGVLSAAGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSMAE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V  ++      +PMA +GGS       F+I +   +V++   ++ +   +   + 
Sbjct: 438 ITPALVGIALTLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVLVALTLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 79/271 (29%), Gaps = 9/271 (3%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                   + +  +      V  N+   +     +      G    Q ++G  ++      
Sbjct: 776  YMQGDAPFRMLPQDVAPWTVRNNQGQMVPFSAFSSTRWTYGSPQLQRYNGSPSYEFVGNA 835

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
              G S            K   +                  +      V ++   + +   
Sbjct: 836  AAGVSSGAAMAAIDDIMKEMPVGIGYEWTGASFQERLSGSQAPLLYAVSILFVFLCLA-- 893

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +   W      I  + L I   L      G+  ++     +LT +G S  + +++ + 
Sbjct: 894  -ALYESWSVPFSVILVVPLGIVGALLGIGFRGLSNDVYFQVGLLTTVGLSSKNAILIVEF 952

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIP 800
                 +L     +  D   +++   L   + TS+A    VLP+   +  G     +    
Sbjct: 953  A---TQLQERGRNVLDATLEAVRLRLRPILMTSLAFGFGVLPLALGSGAGAGGRQAIGTA 1009

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  G+V A    IF      + I  + A  A
Sbjct: 1010 VLGGMVSATVLGIFFVPVFFVLIRGYFADRA 1040


>gi|262369464|ref|ZP_06062792.1| multidrug resistance protein mexB [Acinetobacter johnsonii SH046]
 gi|262315532|gb|EEY96571.1| multidrug resistance protein mexB [Acinetobacter johnsonii SH046]
          Length = 1034

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 74/607 (12%), Positives = 177/607 (29%), Gaps = 46/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GL         Q  ++R+P   P               + +    
Sbjct: 9   RPIFAGVLAIIVMAFGLFATF-----QLPVERYPDIAPP-------------RITVSATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   +K           S    +++I++SF +    +    +V  
Sbjct: 51  TGASAETVEESVTQVLEQQIKGIDHLLYFSSSSDSNGRSRISISFENGTDPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + GV ++L  D ++  +        + ++         S  I  S  ++      +   
Sbjct: 111 AINGVINRLPEDVQRQGVNVYKSLGDTHMVIGLYDQTGKSSNIALSDYMMTHLEQDLARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    +P +LRQ     + +       N        G        
Sbjct: 171 DGVGEVDVFGAQ-YAMRLWLNPHKLRQYGLMPSDIRASVEAQNTQVAAGAIGELPSLSDQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     +                 +    I          +      +       
Sbjct: 230 YLNAKVTSGTRL-------------KTVEEFENIIVKSTRDGSFIYLKDVARVELGAENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +          S  +  +   T        A L +        +    N      
Sbjct: 277 QSFNTINGFPSAGMGISLSSGANALATSALIKQEVARLSSKLPEGYQIVYPRDNTPFVQE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + ++ TLA+L +LG ++   ++
Sbjct: 337 SIKEVVKTLFEAVLLVIVVMFVFLQNWRATLIPTITVPVVILGTLAILYVLGMSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +  S   +           +    +      + 
Sbjct: 397 FALVLAIGLLVDDAIVVVENVERLMHEQQMSAQQASIASMQEISGALIGITLVLTAVFIP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  ++ +S+  A+ +  A+   I++     +      +    
Sbjct: 457 MAFFGGSTGVIYRQFSMTLVAAMALSLLVALILTPALCALILKPNDKSARWATWFNLKLD 516

Query: 534 IPDCIAIQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                 ++        ++   V    L ++ ++            + +G + +       
Sbjct: 517 QLKQRYLKLSTQTIQHSKIMLVVFVALIAVFALFYRALPTSFIPSEDQGILSVQFKLADG 576

Query: 589 VDLSVVR 595
             +S  R
Sbjct: 577 APMSQSR 583



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 86/210 (40%), Gaps = 8/210 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             S    + +  +  K+ E   +   ++      +  +E+++     V++  + M +++ 
Sbjct: 302 ATSALIKQEVARLSSKLPEGYQIVYPRDNTPFVQESIKEVVKTLFEAVLLVIVVMFVFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L    T+ + I  TL    + G+  N   + A++  IG  V+D +VV + + 
Sbjct: 362 ---NWRATLIPTITVPVVILGTLAILYVLGMSINTLTLFALVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               ++   +S +     S+ E  G  +  ++      +PMA +GGS       F++ + 
Sbjct: 418 -ERLMHEQQMSAQQASIASMQEISGALIGITLVLTAVFIPMAFFGGSTGVIYRQFSMTLV 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             + ++   ++ +   +   I     K+AR
Sbjct: 477 AAMALSLLVALILTPALCALILKPNDKSAR 506



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 80/251 (31%), Gaps = 14/251 (5%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
               +    VR++L  +       Q        +V           +    + V       
Sbjct: 777  PDDLQAWTVRNDLNQMIPFTNFAQVSWSGGPEVVNRFMGYTALEMEADTAQNVSSGQAMQ 836

Query: 646  VPLSTIQNTEIVGPKISRELIR------KGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
               S ++  + +    S           + ++  ++S   + + +   ++ W      ++
Sbjct: 837  DVQSMVRGHDGIDLAWSGLSFEENKSNNQALLLYLVSIGFIFLCLAALYESWSIPTAVMS 896

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             + L I   + F  L G   ++    A+LT IG S  + +++ +             +  
Sbjct: 897  AIPLGIGGNILFSYLAGFPNDIYFQIALLTTIGLSCKNAILIVEFA---SLAQQKGQTAI 953

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGS--VIGSFAIPMAFGIVVAASSSIFI 815
            +   +  +  L   + TS+A    V P+   +G          + +  G++      + +
Sbjct: 954  EAALEGASLRLRPILMTSLAFGAGVTPLVFAFGAGAASRQEIGVSVLGGVIFGTVL-VLL 1012

Query: 816  AAPILLFIYDW 826
              P++  +   
Sbjct: 1013 FTPLMYVLVRR 1023


>gi|313498602|gb|ADR59968.1| Toluene efflux pump membrane transporter ttgB [Pseudomonas putida
           BIRD-1]
          Length = 1042

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/687 (12%), Positives = 184/687 (26%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P+  P               + +    
Sbjct: 8   RPVFAWVVALFILLAGALAI-----PQLPVAQYPNVAPP-------------QVEIYAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  + +     +   L                   IT +FA     +     V   
Sbjct: 50  PGASAATMDESVVSLIEQELNGADNLLYFESQSSLGSATITATFAPGTHPDLAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V S+L     +  L         ++L+    +         S  + R  +D+I   +
Sbjct: 110 LKVVESRLPRPVTQQGLQVEKVSTGFLLLATLTSEDGKLDETALSDILARNVMDEIRRLK 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +L     T   ++      N        G    R +  
Sbjct: 170 GVGKAQLYGS-ERAMRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPSRSTQE 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K ++S                +    +                 +        
Sbjct: 229 ITANVVVKGQLS-------------SPEEFAAIVLRANPDGSTVTIGDVARVEIGAQEYQ 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G  L                +   T          L           +          S
Sbjct: 276 YGTRLNGKPATAFSVQLSPGANAMETATLVRAKMQELARYFPEGVKYDIPYDTSPFVKVS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV  V+F+ +   ++ L+    + + ++ T A++  +G ++ + ++ 
Sbjct: 336 IEQVINTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +      +      +    I    +  +   + +
Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMAEEGLPPKQATRKAMGQISGAIVGITLVLVAVFLPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFF 532
            F  G      + F+++M +SIL S F A+S+  A+   +++                F 
Sbjct: 456 AFMQGSVGVIYQQFSLSMAVSILFSAFLALSLTPALCATLLKPVAKGEHHERKGFFGWFN 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG-----IDFKGGIQLGVLANR 587
              + ++  + R     +  S  + +    LL   G  +                +   +
Sbjct: 516 RRFESMSNGYQRWVVQALKRSGRYLLVYAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQ 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +      +     +       G  N  + L +    S     +     K  +E   
Sbjct: 576 LPPGASRMRTEQVAAQIEAHNAEEPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSERSA 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             + Q+          +L       V+
Sbjct: 636 DDSAQSIADRATMAFTQLKDAIAYSVL 662



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 81/243 (33%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q      +                 +++    ++    +++    
Sbjct: 257 STVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANAMETATLVRAKMQELARYF 316

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I + I  +  + + +   +++  +   + L     + + + 
Sbjct: 317 PEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALM 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++  IG  V+D +VV + +     +    +  +    K++
Sbjct: 377 GTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPKQATRKAM 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      LPMA   G   VI   F++ MA  I+ +A  ++ +   +   
Sbjct: 435 GQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSILFSAFLALSLTPALCAT 494

Query: 823 IYD 825
           +  
Sbjct: 495 LLK 497



 Score = 42.0 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W      +  + L +   +    L G+  ++     +
Sbjct: 866  QAPLLMALSLLVVFLCLAALYESWSIPTAVLLVVPLGVLGAVLAVTLRGMPNDVFFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG S  + +++ +  +    L    +   D   ++    L   V TS+A  + V+P+
Sbjct: 926  ITLIGLSAKNAILIIEFAK---HLVDQGVDAVDAAVQAARLRLRPIVMTSLAFILGVVPL 982

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSS 812
            A+  G+   S    +  G++    S+
Sbjct: 983  AIASGASSAS-QQAIGTGVIGGMLSA 1007


>gi|222109537|ref|YP_002551801.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Acidovorax ebreus TPSY]
 gi|221728981|gb|ACM31801.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax ebreus TPSY]
          Length = 1048

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 76/629 (12%), Positives = 171/629 (27%), Gaps = 50/629 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  IG +        Q  + ++P+  P               + + V  
Sbjct: 8   RPIFAWVIAIFIMVIGAVSI-----TQLPVAQYPTVAPPT-------------IQVTVAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKK---EGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  L+      +   +           + +      I LSF      +     V  
Sbjct: 50  PGATAQTLEDNVLSVIEREMNGATGLAYMETTSQANGTGTIVLSFEPGTNDDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L     +  +     +   ++ S    D    +    +    R  + ++   
Sbjct: 110 RLSRATPRLPAAVTQQGVRVEKSRSNFLLFSILTSDNPDINIDALNDYAARNVVPELQRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L+    +  +++      N        G        
Sbjct: 170 PGVGGVTQFGS-ERAMRIWIDPAKLKGFNLSLDQVNASIRAQNVQVSAGNLGELPSPAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K ++S                +    I                 I       
Sbjct: 229 TISATIVVKGQLS-------------TPEEFGNVILRANTDGSTVRLKDVARIELGAQTY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +   T +      A L+          +          
Sbjct: 276 NFSGRLNGSPSVGMGVQLTSSANALATADAVKSKLAELQRYFPQGVAYTIPYDTSTFISV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV +V+F+ +   ++ ++    + + ++ T   L  +G ++ + ++
Sbjct: 336 SIEKVVYTLLEAIGLVFLVMFLFLQNFRYTIIPTIVVPVALLGTFGALLAMGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +  S +    +  +   V 
Sbjct: 396 FGMVLVIGIVVDDAIVVVENVERIMAEEGLPPLQATRKAMGQISSAVIGMTVVLVSVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           L FF    G   R FA+TM  SI  S F A+S+  A+   +          +       +
Sbjct: 456 LAFFAGSTGNIYRQFAVTMATSIAFSAFLALSLTPALCATLLKPVTEGHHDKTGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           +A    R+    +  ++L    ++  +         + +G +   V 
Sbjct: 516 RSFKHATHSYESFLARLVRRSGRMMIIYAVLLGAVAVVYMRLPTSFLPNEDQGFLISNVQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                     R+ L  ++   +       
Sbjct: 576 LPPGASQERTRAALTKVEEFMLKQPEVRD 604



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 83/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q  + S +        +        +++A    ++    ++    
Sbjct: 258 STVRLKDVARIELGAQTYNFSGRLNGSPSVGMGVQLTSSANALATADAVKSKLAELQRYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I K +  ++ +   + + +++  + + + +     + + + 
Sbjct: 318 PQGVAYTIPYDTSTFISVSIEKVVYTLLEAIGLVFLVMFLFLQNFRYTIIPTIVVPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G     G   N+  +  ++ +IG  V+D +VV + +     +    +       K++
Sbjct: 378 GTFGALLAMGFSINVLTMFGMVLVIGIVVDDAIVVVENV--ERIMAEEGLPPLQATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +     +  ++      +P+A + GS       FA+ MA  I  +A  ++ +   +   
Sbjct: 436 GQISSAVIGMTVVLVSVFVPLAFFAGSTGNIYRQFAVTMATSIAFSAFLALSLTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 69/182 (37%), Gaps = 8/182 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L    + E  G     +L   + +V    + +A+ + +   ++ W   
Sbjct: 834  DAMAEMERLASQLPEGFSFEWTGQSREEKLAGSQALVLYAFALLAVFLCLAALYESWSIP 893

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   +    L G+  ++     ++T+IG S  + +++ +  +    L   
Sbjct: 894  FSVMLVVPLGVLGVVLGVLLRGMANDVYFQIGLVTIIGLSAKNAILIVEFAKD---LQAQ 950

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAAS 810
              +  +   ++ +      V TS+A  + V+P+ +  G+      +    +  G++    
Sbjct: 951  GKNIIEAALEAAHLRFRPIVMTSLAFTLGVVPLYLASGASSASQRAIGTGVVGGMITGTL 1010

Query: 811  SS 812
             +
Sbjct: 1011 LA 1012


>gi|149197622|ref|ZP_01874672.1| hydrophobe/amphiphile efflux-1 family protein [Lentisphaera
           araneosa HTCC2155]
 gi|149139192|gb|EDM27595.1| hydrophobe/amphiphile efflux-1 family protein [Lentisphaera
           araneosa HTCC2155]
          Length = 1042

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/600 (13%), Positives = 180/600 (30%), Gaps = 40/600 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G +  +        + ++P   P               + +   
Sbjct: 9   RRPRFAFVISIIILIAGSIAMV-----NLPVAQYPEITPP-------------QVSVTAS 50

Query: 62  EDDF-VNGFLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +      L S +   E +   S +   +    IT++F  S         V 
Sbjct: 51  YPGADSKTLIDTVITPLESEINGVEDMLYVSSKASNDGNVTITVTFDVSSDPNINTVNVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL  +  +  ++   +    +++      +     +  S        D++  
Sbjct: 111 NRVSAATAKLPAEVTRQGVIVRQKSTSMLLVVNLLSPEKTYDGLFLSNYATINVKDRLLR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP ++  L  +  ++       N      + G    + S
Sbjct: 171 LPGVGDITLFGGQDYSMRVWLDPDKMTALNLSPQEVVSAIEEQNVQVAAGIVGGAPSKAS 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY V+ +  +S             +  +    I                ++      
Sbjct: 231 QKFQYTVQTQGRLS-------------EPEEFGRIIVRANQDGSFVRVNDVASVELGAVN 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +G    +       ++           +         
Sbjct: 278 YDSTSKLNGQPGLVMPIYQLPSANGIAVADAVRAEMDLIAESFPDDIEYDILYDTTKFIE 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  +   LV++V+++ +   +  ++   +I +++I T A L  LG TL   +
Sbjct: 338 ASIDEVISTLFVAVLLVILVVYIFLQDVRSTIIPSLTIPVSLIGTFAFLLALGYTLNTVT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G++L IG+ VD  I+V E ++   + +  S   +           I  + +  L   V
Sbjct: 398 LFGLILAIGIVVDDAIVVLENVQRLMDEEGLSPRAATQKAMEEVSGPIVATTLVLLAVFV 457

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F     G   R FA+T+ +++ IS   A+++  A+    +R +           +F 
Sbjct: 458 PVAFLPGITGTLYRQFAVTISVAVCISSLNALTLSPALCSCFLRPQDKTKKKFFLFEKFN 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +      ++       +   I+  +C   +LF     Y     G +      N  VD+ 
Sbjct: 518 KLVSWSTDKYAGFVKLSIRKIIITMLCFGGMLFLTFQFYTSTPTGFLPDEDQGNFLVDVQ 577



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 61/140 (43%), Gaps = 6/140 (4%)

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           YI+++      +    T+ + +  T  F    G   N   +  ++  IG  V+D +VV +
Sbjct: 359 YIFLQ-DVRSTIIPSLTIPVSLIGTFAFLLALGYTLNTVTLFGLILAIGIVVDDAIVVLE 417

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAI 799
            +     +    +S R    K++ E  G  V T++      +P+A   G    +   FA+
Sbjct: 418 NV--QRLMDEEGLSPRAATQKAMEEVSGPIVATTLVLLAVFVPVAFLPGITGTLYRQFAV 475

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            ++  + +++ +++ ++  +
Sbjct: 476 TISVAVCISSLNALTLSPAL 495



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 91/251 (36%), Gaps = 16/251 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   V L V+ +    +    I+  N      F            A   + E+ +  + 
Sbjct: 793  RSGDMVPLGVLVNLESMVGPDVINRYNLFNSITFNGGAAPGYSSGQAMDAMEEVARSVLP 852

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTL 700
                     + +  G     ++   G VG+I +   + I++++      W+  +  + ++
Sbjct: 853  PG------YSYDWTGMSYQEKI-SSGNVGLIFALAIVFIFLFLVAQYESWFTPISVLMSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             + +   LGF  L  ++ N+ +   ++ L G +    +++ +  ++      +  +  D 
Sbjct: 906  PVAMFGALGFNWLMKMDNNIYSQVGIVLLFGLASKTAILIVEFAKE---KRESGETILDA 962

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
               +        + T+++  + V+P+ +    G +   S  + +  G++VAA     +  
Sbjct: 963  AVIAARLRFRAVLMTAISFILGVIPLVIATGAGSASRRSLGVIVFGGMMVAAILGTLLIP 1022

Query: 818  PILLFIYDWRA 828
                 I   R 
Sbjct: 1023 GFYYTIQSIRE 1033


>gi|108799244|ref|YP_639441.1| preprotein translocase subunit SecF [Mycobacterium sp. MCS]
 gi|119868360|ref|YP_938312.1| preprotein translocase subunit SecF [Mycobacterium sp. KMS]
 gi|126434902|ref|YP_001070593.1| preprotein translocase subunit SecF [Mycobacterium sp. JLS]
 gi|108769663|gb|ABG08385.1| protein translocase subunit secF [Mycobacterium sp. MCS]
 gi|119694449|gb|ABL91522.1| protein translocase subunit secF [Mycobacterium sp. KMS]
 gi|126234702|gb|ABN98102.1| protein translocase subunit secF [Mycobacterium sp. JLS]
          Length = 417

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 142/317 (44%), Gaps = 15/317 (4%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L     A + +  R     IS +  + ++  +   G  +GIDF+GG ++G+   
Sbjct: 23  HGFFVRLYTGTGAFEVVGRRKMWYAISGVIVLIALASILIRGFTFGIDFEGGTKVGMPVA 82

Query: 587 RPVDLSVVRSN----LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                + V        E+L     S        +  V+++ +   +   + +   +  + 
Sbjct: 83  GANGNAEVTQVETVFNETLGKPPESVVIVGSGSSATVQIRSETLSNDEASELRTALFDRF 142

Query: 643 TEIVPLSTIQ----NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
             I           +   V      ++ +K ++ + +  +   +YI IR++ + A+ A+ 
Sbjct: 143 QPIGEDGQPSEQAISDSAVSETWGGQITKKALIALAVFLVLASLYIGIRYERWMAIAAMA 202

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSIS 756
           TL+ D+  T G ++L G E +   V  +LT++G+S+ D V+V+D++ +N     +TT  +
Sbjct: 203 TLLFDLVVTAGVYSLVGFEVSPATVIGLLTILGFSLYDTVIVFDKVEENTHGFEHTTRRT 262

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASS 811
           F +  + ++N+T  RS+ TS+ + + ++ +      + G   +   A+    G++V   S
Sbjct: 263 FAEQANLAVNQTFMRSINTSLISVLPIIALMVIAVWLLGVGTLMDLALVQLVGVIVGTYS 322

Query: 812 SIFIAAPILLFIYDWRA 828
           SIF A P+L+ + +   
Sbjct: 323 SIFFATPLLVSLRERTQ 339


>gi|186893853|ref|YP_001870965.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|186696879|gb|ACC87508.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 1041

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 72/684 (10%), Positives = 192/684 (28%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++      L    + ++P   P +                    
Sbjct: 9   RPVFAWVIAIVIMLGGVVA-----LETLPIAQYPDVAPPSI---------SIKATYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + L        S     N KI  +F      +    +V   +Q 
Sbjct: 55  AETLENSVTQVIEQELTGLDGLLYFSSSSGSDGNAKIVATFKQGTNADTAQVQVQNKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + +   +  T  +   +++     ++      + +  ++    D +   E   
Sbjct: 115 ALTRLPTEVQAQGVTVTKSQTNFLLIMSLYDEKDKHTGTDIADYLVSNLQDPLARLEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P++L       + +       N        G            
Sbjct: 175 SVQVFGSQ-YAMRIWLNPTKLAAYNLMPSDVQSAITAQNTQVSAGKIGALPSGKEQQLTA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +             +           
Sbjct: 234 TVMAQSRL-------------KTPEQFNNIIVKSDSTGAVVRLRDVARVELGNEDYSVTT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T E     AA               + +      S   
Sbjct: 281 RLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELNLPDGYKIAYPKDSTDFIKVSVEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ + ++ T  +L++ G ++   ++ G+V
Sbjct: 341 VVKTLIEAILLVVIVMYIFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    R++      + +   S   S +    +      + + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERVMREDNLPPREATEKSMSEISSALIGIALVLSAVFLPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------IDINPLS 529
           GG      R F+IT+  ++ +S+  A+++  A+    ++               +     
Sbjct: 461 GGATGVIYRQFSITIVSAMALSVLVALTLTPALCATFLKPNHKPPSEHGFFGGFNRRYDR 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R+  + +  ++L  +  +  +         + +G + +        
Sbjct: 521 MQTRYESLVGHVIHRSLRYLLIYAVLIGVMCVLFIRLPTGFLPTEDQGDVMVQYTLPAGA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                    ++++   ++ +  + +  F +      G           +K         +
Sbjct: 581 TSGRTMEVSKAVENYFMTQEKDNTKAVFTISGFGFSGSGQNAGMAFIALKHWRDRPGSEN 640

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
           T         K    +    I  +
Sbjct: 641 TATAIADRAMKALSSIRDAQIFSM 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 99/287 (34%), Gaps = 6/287 (2%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            G   S      +  ++    L     F   I         V L  V       +   ++
Sbjct: 220 IGALPSGKEQQLTATVMAQSRLKTPEQFNNIIVKSDSTGAVVRLRDVARVELGNEDYSVT 279

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +        +  +     +++A    ++    +    +P               +  + 
Sbjct: 280 TRLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELNLPDGYKIAYPKDSTDFIKVSVE 339

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           + +  +I + + ++I ++I  +     L     + + +  T G  A+FG   N   +  +
Sbjct: 340 EVVKTLIEAILLVVIVMYIFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGM 399

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  IG  V+D +VV + +     +   ++  R+  +KS++E     +  ++      LPM
Sbjct: 400 VLSIGLLVDDAIVVVENV--ERVMREDNLPPREATEKSMSEISSALIGIALVLSAVFLPM 457

Query: 787 AVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A +GG+       F+I +   + ++   ++ +   +         K 
Sbjct: 458 AFFGGATGVIYRQFSITIVSAMALSVLVALTLTPALCATFLKPNHKP 504



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 109/361 (30%), Gaps = 25/361 (6%)

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           +   ++     +A S+I D+ I ++    V          G +      +  +  T+   
Sbjct: 640 NTATAIADRAMKALSSIRDAQIFSMTPPAV-------DGLGQSNGFTFELQATGDTSREQ 692

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           +  +   +I       I  +  +        + +     +   +G+SI     ++   + 
Sbjct: 693 LLTLRDQLISKANKDPILASVRANTLQQMPQLQVDIDNDKVAALGLSISDVNATLSAAWG 752

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE------------ 614
                    +G ++   +       S      +    G                      
Sbjct: 753 GTYINDFIDRGRVKKVYMQGDVDTRSKPEDLNQWFVRGSSDAMTSFSAFATTRWIYGPET 812

Query: 615 -KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              +  +  Y+     A          ++ ++       +    G      L     + +
Sbjct: 813 LSRYNGQTSYEIQGQAASGSSSGTAMDQMEKLAAELPGTSYAWSGLSYQERLASGQALSL 872

Query: 674 -IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             IS + + + +   ++ W      +  + L I   +    L G+E ++    A+LT +G
Sbjct: 873 YAISILVVFLCLAALYESWSVPFSVMMVIPLGIIGAVAAATLRGLENDIYFQVALLTPLG 932

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +  + +++ +   +    Y           +     L   + TS+A    V+P+A+  G
Sbjct: 933 LASKNAILIVE-FAE--AAYLRGEPLVAAALQGAATRLRPILMTSLAFIAGVMPLAMSTG 989

Query: 792 S 792
           +
Sbjct: 990 A 990


>gi|90426106|ref|YP_534476.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
 gi|90108120|gb|ABD90157.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
          Length = 1047

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/684 (11%), Positives = 183/684 (26%), Gaps = 46/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +GL+      +    + ++P+ +P               + +    
Sbjct: 9   RPVFAAVISIGIVLVGLIS-----MRALPIAQYPAIVPPE-------------VRISATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  L   +   E +         +    I+++FA     +     V  
Sbjct: 51  PGASAETIAETVAAPLEQQINGVENMLYMRSTSTGSGTLSISVTFAIGTDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q     L  +  +  +V        + +   +        +      +   ID++  +
Sbjct: 111 RVQRATPLLPAEVARQGVVVQKRSSDILQVLTMSSPGERYDTVFIGNYALINVIDELRRT 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P +L Q   T   ++      N       FG       +
Sbjct: 171 PGVGDASLFGASDYSMRIWLRPDKLAQFSLTPGDIAAAIREQNAQFAAGRFGEEPQTKPN 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  +                    +    I   +             +       
Sbjct: 231 AFTYSVTTQGR-------------FADPAEFENIIIRSDEFGGALRVKDVARVELGALNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +              L+A                    
Sbjct: 278 SFAATYNGAPTVPIGVYLQPGANALEVSANVLATMDRLQARFPEGLEYRNPFNTTRFVEA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+F+ +   +  L+   ++ ++VI T A +  LG ++ L ++
Sbjct: 338 SIERVVRTFIEAIVLVTSVVFLFMQNLRATLIPVIAVPVSVIGTFAGMYALGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E I      + +S   +           +  ++++     V 
Sbjct: 398 FGLVLSIGIVVDDAIVVLENIERIMRTEKRSPRDAAIKAMDEVSGPVIATSLSLCAVFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINP 527
           + F G   G   R FA+T+ +S++IS   A+++  A+   I         +  +  +   
Sbjct: 458 VSFLGGLAGELYRQFAVTIAVSVVISSIVALTLTPALAALILKPQHQEPARPFRIFNRGF 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A    R       + ++ +  ++      G     + +G + +      
Sbjct: 518 EWLTDRYGAMVAFFMRRVVVSLAVVGVMLAATAVLFNTVPGSLVPEEDQGRVLMVTSLPP 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              LS  R   +             G                        +K       P
Sbjct: 578 AASLSRTREIGQITANTIKDMPEVSGVVTMSGYDILSSAQKTNAGVSFITLKDWAERTTP 637

Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671
            S  +       +++       ++
Sbjct: 638 ESDARQFAPALSRLNALFRDGVVI 661



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 80/196 (40%), Gaps = 8/196 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             ++ ++ +  E +      NT          ++R  I  +++    + +++        
Sbjct: 310 ATMDRLQARFPEGLEYRNPFNTTRFVEASIERVVRTFIEAIVLVTSVVFLFMQ---NLRA 366

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  +  + + +  T       G   NL  +  ++  IG  V+D +VV + +     + T
Sbjct: 367 TLIPVIAVPVSVIGTFAGMYALGFSINLLTLFGLVLSIGIVVDDAIVVLENI--ERIMRT 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              S RD   K+++E  G  + TS++     +P++  G   G +   FA+ +A  +V+++
Sbjct: 425 EKRSPRDAAIKAMDEVSGPVIATSLSLCAVFVPVSFLGGLAGELYRQFAVTIAVSVVISS 484

Query: 810 SSSIFIAAPILLFIYD 825
             ++ +   +   I  
Sbjct: 485 IVALTLTPALAALILK 500



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 70/170 (41%), Gaps = 8/170 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G  G +   + + + +  ++ +W   L  +T +   +   +    L G+E N+     +
Sbjct: 869  TGYQGFLFGLLMVFLILAAQYERWSLPLAVLTAVPFALFGAILAIWLRGLENNIYFQIGL 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG S  + +++ +      + +   +S  D   ++        + TS+   + V+P+
Sbjct: 929  VTLIGLSAKNAILIVEFA---ARRHREGLSVVDAALEAARLRFRPIIMTSLTFILGVMPL 985

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            A+    G +   S    +  G++ A + +I I  P+   +       A +
Sbjct: 986  AIANGAGSASQHSIGTGVIGGMIAATALAI-IFVPLFFRLLTRSRVKAEV 1034


>gi|307719625|ref|YP_003875157.1| protein-export membrane protein SecF [Spirochaeta thermophila DSM
           6192]
 gi|306533350|gb|ADN02884.1| protein-export membrane protein SecF [Spirochaeta thermophila DSM
           6192]
          Length = 355

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 80/298 (26%), Positives = 151/298 (50%), Gaps = 6/298 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFT---HGLNYGIDFKGGIQLGVLANRPVDLSV 593
              I+F R R   + +S+L  +      F      L          ++ V  +    +  
Sbjct: 1   MKVIRFTRYRALAITLSLLVIVAGGVATFFQGGFNLGIDFRAGLTERVAVAPSVSASIED 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI--VPLSTI 651
           VR  L  +    +        + FL++++ + G    +      +   ++          
Sbjct: 61  VRRALAGIPGVQVQTIGDPEAQEFLIKVKEEEGAENFRETTRTAILSALSAAFGEGNVEE 120

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           ++++ +GP+ S  +  +  + V+++   ML+YIW RF+  +A+GAIT L  D+   LG  
Sbjct: 121 RSSQYIGPRFSESIASQSFLLVLVAIFFMLVYIWFRFQLAYAVGAITALFHDVFVLLGVI 180

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             F +E +   +AA+LT++GYS+ND +VV+DR+R+N +L      FR+++D SI +TL R
Sbjct: 181 GAFQLEVSTATIAAILTIVGYSINDTIVVFDRIRENTQLL-KERPFREIVDGSITQTLSR 239

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++ TS+   ++VL + ++    I  FA  +  GI+V   SSIFIA+P++++I + R +
Sbjct: 240 TLITSLTTLLAVLAIYIFTTGDIKLFAFNLIVGILVGTYSSIFIASPVMMWIRNARHR 297


>gi|220922173|ref|YP_002497474.1| protein-export membrane protein SecF [Methylobacterium nodulans ORS
           2060]
 gi|219946779|gb|ACL57171.1| protein-export membrane protein SecF [Methylobacterium nodulans ORS
           2060]
          Length = 316

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 169/298 (56%), Gaps = 5/298 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L PD     FMR R +    S L S+ ++ L    GLN+GIDFKGG  + +    
Sbjct: 1   MRLLRLWPDESHFDFMRFRRFSFPFSALMSVGTLVLFLMIGLNFGIDFKGGTLIELRPKS 60

Query: 588 -PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D++ VR        G+   Q F  + +  +R   Q G    QT V++          
Sbjct: 61  GQSDVAAVRHTANGFGFGETEVQEFGNQGSISIRFPLQAGGETGQTLVMQKAHAAF---D 117

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                   E VGP++S EL++ G +GV++S +A+L+Y+W RF+   ALGAI   + DI  
Sbjct: 118 KDYVFDRVETVGPRVSGELVQSGTIGVVLSVVAVLLYLWFRFERELALGAIVGTLHDIVL 177

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+G F +  IEFN+T++AA+LT++GYS+N+ VVV+DR R+ M+ Y  ++    L++ SIN
Sbjct: 178 TVGVFVISRIEFNMTSIAAILTIVGYSLNETVVVFDRTRELMRRY-KTMPTEQLLNLSIN 236

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            T+ R+V T+ +  +S++ + ++GG  I  F++ M  G+++   S+IF+++P L++I 
Sbjct: 237 TTMSRTVMTATSTALSLMALVLFGGEAIKGFSVVMLIGVLICTYSAIFVSSPFLIYIG 294


>gi|224025763|ref|ZP_03644129.1| hypothetical protein BACCOPRO_02504 [Bacteroides coprophilus DSM
           18228]
 gi|224018999|gb|EEF76997.1| hypothetical protein BACCOPRO_02504 [Bacteroides coprophilus DSM
           18228]
          Length = 1011

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/687 (12%), Positives = 189/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   GL+           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGLI-----GYTTLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NAEVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+    +  
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVAIQSDS--RSLLELSEIADLTVKEQLQTISNVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +                             
Sbjct: 173 SVSIWGEKRYSMRLWLDPNKLAGYGITPVDIKNAITNE--------------------NL 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                     T K   ++   E+  +              A +    
Sbjct: 213 ELPSGSIEGNTVELTLRTMGQMHTAKEFNNVIIKEVNGQVIRFSDIGYAELGAADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        +R              +      S + 
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYERMEQMRKDLPEDVTYSYGFDSTKFIRASIAE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+I++F+ +   +  L+    I +++I    ++ + G ++ + ++  +V
Sbjct: 333 VESTVYEAFVLVIIIIFLFLRDWRVTLIPCIVIPVSLIGAFFVMYVAGFSINVLTMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K    F +   G    +  +  + IT +   + + F  
Sbjct: 393 LSVGLVVDDAIVMTENIYIRIEKGMKPFDAGIEGAKEIFFAVISTTITLVAVFLPIVFME 452

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK----KMKSIDINPLSRFFLI 534
           G +    R F+  +  S++IS F A++    +   ++  +                   I
Sbjct: 453 GTSGRLFREFSFVVAGSVIISSFAALTFTPMLATKLLIKREKQGWFYRKTEPFFEGMNRI 512

Query: 535 PDCIAIQFMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 +F+  R   +  + I   + +            ++ +  I +   A        
Sbjct: 513 YGRSLDKFLSKRVIAIPFTLITLVLIAFLWNKIPAEMAPLEDRSKITISTRAAEGASYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S              G  N  + L+        Q +V E + K I  
Sbjct: 573 IRDYTEDINDLVDSIVPDAAAVTARVSSGSGNIQITLKDIQDRDYTQMQVAEKISKAIRT 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                T    +         +  + ++
Sbjct: 633 KTKARTFVQQQSSFGGRRSSMPVQYVL 659



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 86/282 (30%), Gaps = 6/282 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI  +   + L     ++   +F   I   V         +  + L +  I      N  
Sbjct: 218 SIEGNTVELTLRTMGQMHTAKEFNNVIIKEVNGQVIRFSDIGYAELGAADIKSYMKMNGV 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +V  Q           V E +++   ++    T          I   +       
Sbjct: 278 PMVGVVVIPQPGANHIEIADAVYERMEQMRKDLPEDVTYSYGFDSTKFIRASIAEVESTV 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + ++I       W   L     + + +        + G   N+  + AV+  +G 
Sbjct: 338 YEAFVLVIIIIFLFLRDWRVTLIPCIVIPVSLIGAFFVMYVAGFSINVLTMLAVVLSVGL 397

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +          +   D   +   E     + T++      LP+    G+
Sbjct: 398 VVDDAIVMTENI---YIRIEKGMKPFDAGIEGAKEIFFAVISTTITLVAVFLPIVFMEGT 454

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  F+  +A  +++++ +++     +   +   R K  
Sbjct: 455 SGRLFREFSFVVAGSVIISSFAALTFTPMLATKLLIKREKQG 496



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 72/196 (36%), Gaps = 7/196 (3%)

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
              KI   V   T +       K  RE     +   I++ + + + +  +F+ +      +
Sbjct: 815  MDKIASEVLDETFRTALSGDSKDYRESSSSLMFAFILALVLIYLILAAQFESFKDPFIIM 874

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             T+ L I   L F     I  N+ +   ++ LIG    + +++ +      +      + 
Sbjct: 875  LTVPLAIAGALVFMFFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN---QKQEAGENK 931

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIF 814
               I  +  + L   + TS +  + +LP+    G            +  G++V+   +++
Sbjct: 932  MQAIRDAALQRLRPILMTSASTILGLLPLTFATGEGANQRIAMGTAVVGGMLVSTFLTMY 991

Query: 815  IAAPILLFIYDWRAKN 830
            I   I  +I   R K 
Sbjct: 992  IVPAIYSYISTNREKK 1007


>gi|325289929|ref|YP_004266110.1| protein-export membrane protein SecF [Syntrophobotulus glycolicus
           DSM 8271]
 gi|324965330|gb|ADY56109.1| protein-export membrane protein SecF [Syntrophobotulus glycolicus
           DSM 8271]
          Length = 308

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 147/302 (48%), Gaps = 11/302 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I+F + R+    ISI F +  I   F +G+   I FKGG  L    +  +D       +E
Sbjct: 2   IRFYKRRYIYFTISICFVLLGIVAAFINGIQLDIQFKGGTILKYTYSDTIDADQANKFVE 61

Query: 600 SLQIGDISFQNFDG-EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI-- 656
                  + Q      KN  + +          ++  E V   +T   P + +  +E   
Sbjct: 62  QAVGRTTNCQLQSNMAKNEQILIVSLGSKEALSSQEQEAVTSALTTAYPNANLALSESLT 121

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFFA 712
           V P I +     G++ + +S + +LIY+ +RF+        + AI  L  D+      F 
Sbjct: 122 VEPFIGKHFFTNGMLAIGLSFLLILIYVGLRFRNIGGLSAGVMAIIALFHDVFIVTAAFV 181

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           +F I  N + +AA+LT+IG+S+ND +V+YDR+R+N +L++  +   +L+D SIN+++ RS
Sbjct: 182 IFKIPLNDSFIAAILTIIGFSINDTIVIYDRIRENERLFSKKVPKEELVDTSINQSMMRS 241

Query: 773 VYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           V T++A F+S+  + ++        I  FA+PM FG V    S+I IA P+     + + 
Sbjct: 242 VNTNIAVFVSITVIYIFAQIYDIGSIRDFALPMMFGTVSGCYSTICIAGPLWTMWQNRKK 301

Query: 829 KN 830
             
Sbjct: 302 TR 303


>gi|300022326|ref|YP_003754937.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524147|gb|ADJ22616.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 1061

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/680 (11%), Positives = 179/680 (26%), Gaps = 39/680 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+      LP   + ++P   P   +            +     
Sbjct: 8   RPVLAWVFAFFIAIAGLIA-----LPFLPISQYPKVAPPQVM---------ISTLYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + + +      +        IT +F      +  +  V   L+ 
Sbjct: 54  PQEIYQGVTRQIEEELNGVDQLVYFESTSDTSGAITITATFKPGSDIDQASIDVQNKLRR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L        +         ++          +  I     + R  + ++   +   
Sbjct: 114 VEPRLPRAVTAQGITVEEASTGFLLFIALTSTDGKTDEIALGDYLSRNVLGELRRIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++     T + +S   +  N        G      +     
Sbjct: 174 RAQLFSAQR-AMRVWIDPDKMVGYNITASDVSDAILAQNAQVAAGQIGAAPNPITQDLTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K ++S                +    I                 +           
Sbjct: 233 TVLVKGQLSDT-------------KEFGEIILRANPDGSTVRLHDVARVEVGAETYSFAG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +        L           +          S   
Sbjct: 280 RLDGQPSAAVGIQLSTSGNAVATAKAIKAKMEELSRFFPQGVAYSIPYDTSPFVSASIEK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   ++ L+    + + ++ TLA++   G ++ + ++  +V
Sbjct: 340 VLHTLVEAIVLVFIVMFVFLQSFRYTLIPTLVVPVALLGTLAVMYAAGFSINVLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +      +    I    +      + + FF
Sbjct: 400 LAIGILVDDAIVVVENVERIMAEEGLSPKDATRKAMGQITGAILGITLVLASVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F++TM +SIL S F A+S+  A+   +           +       +   
Sbjct: 460 PGSTGIIYRQFSLTMVVSILFSAFLALSLTPALCATL------LKPIPHGHHEKKGLGGW 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R               +  ++  +             L        D   +  +
Sbjct: 514 FNRTFDRMTSGYSERIAGLVKRAGRMMVVYLALLAGLGYLFFNLPSAFVPDEDQGYIIVD 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           ++       +      EK   V       D+V   +            +   T+++    
Sbjct: 574 VQGPPEASQNRTIASLEKIEAVFKGEPAVDNVFSVQGFSFSGNGPNAALVFPTLKDWSER 633

Query: 658 GPKISRELIRKGIVGVIISA 677
           G   S + I   +   + + 
Sbjct: 634 GAGNSAQEIANRVNMQLFAL 653



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 91/241 (37%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    + +        +       G++VA  + ++   ++++   P 
Sbjct: 260 VRLHDVARVEVGAETYSFAGRLDGQPSAAVGIQLSTSGNAVATAKAIKAKMEELSRFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
               +            I K +  ++ + + + I +++    + + L     + + +  T
Sbjct: 320 GVAYSIPYDTSPFVSASIEKVLHTLVEAIVLVFIVMFVFLQSFRYTLIPTLVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L      G   N+  + A++  IG  V+D +VV + +     +    +S +D   K++ +
Sbjct: 380 LAVMYAAGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERIMAEEGLSPKDATRKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GS       F++ M   I+ +A  ++ +   +   + 
Sbjct: 438 ITGAILGITLVLASVFIPMAFFPGSTGIIYRQFSLTMVVSILFSAFLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 65/162 (40%), Gaps = 7/162 (4%)

Query: 668  KGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +    + +S + + + +  +   W   L  I  + L +  ++    L G+  +L     +
Sbjct: 866  QAPFLLALSILFVFLLLAGLYESWSIPLAVILVVPLGVIGSVAAVMLRGMPNDLYFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + +IG S  + +++ +  +     Y    S R+   ++    L   + TS+A  + V+P+
Sbjct: 926  IAIIGLSAKNAILIVEFAKDY---YAQGKSLREAAVEAARIRLRPIIMTSLAFALGVVPL 982

Query: 787  AVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            A+  G    S       +  G++ A   +I       +F+  
Sbjct: 983  AIAVGPSAASQNAIGTGVLGGMISATILAIIFVPAFFVFVLG 1024


>gi|157147059|ref|YP_001454378.1| hypothetical protein CKO_02836 [Citrobacter koseri ATCC BAA-895]
 gi|157084264|gb|ABV13942.1| hypothetical protein CKO_02836 [Citrobacter koseri ATCC BAA-895]
          Length = 1035

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/683 (10%), Positives = 187/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P +                   
Sbjct: 8   RRPVFAWVIAILIMLAGILAI-----KTLPVAQYPDVAPPSVK---------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAETLENSVTQVIEQQLTGLDNLLYFTSTSSSDGSVSIDVTFEQGTDPDTAQVQVQNKVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + +++ +     +   ++++        + + + +  ++    D +   E  
Sbjct: 114 QAESRLPSEVQQSGVTVVKSQSNFLLIAAVYDKSDRASSSDIADWLVSNVQDPLARVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     D+    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVSAGKIGALPSPDTQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVEQFKKIIIKSQSDGAVVRIQDVARVEMGSEDYTAI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 AKLNGHPAAGVAVMLAPGANALDTATLVKDKVAEFKRDMPQGYDVAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVVQTLFEAIILVVCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEIAGALVAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN----PLSRFF 532
           FGG      R F++T+  ++L+S+  A+++  A+   I+ +                   
Sbjct: 460 FGGSTGVIYRQFSVTIISAMLLSVVVALTLTPALCGSILSHTAPHKKGFFGIFNRFYSRT 519

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                  +  +  R   V         ++ L         +  +   ++ V    P   +
Sbjct: 520 EQGYQRGVLHVLRRSVSVMGVYALLCGAMALAMWKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR--VLEMVKKKITEIVPLST 650
             R+   + Q+ D          + +  +         Q        +K         +T
Sbjct: 580 ASRTAEVNRQVTDWFLNKEKANTDVIFTVDGFSFSGSGQNAGMAFVSLKNWSERKGEENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   K    +    +  +
Sbjct: 640 AQAIALRASKELGAIRDATLFAM 662



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 91/248 (36%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 261 VRIQDVARVEMGSEDYTAIAKLNGHPAAGVAVMLAPGANALDTATLVKDKVAEFKRDMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   +  +  + I ++  +++  +     L     + + +  T
Sbjct: 321 GYDVAYPKDSTEFIKISVEDVVQTLFEAIILVVCVMYLFLQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LPMA +GGS       F++ +   ++++   ++ +   +   I 
Sbjct: 439 IAGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMLLSVVVALTLTPALCGSIL 498

Query: 825 DWRAKNAR 832
              A + +
Sbjct: 499 SHTAPHKK 506



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 76/253 (30%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +               + G  S   ++G   + ++ +   G S              
Sbjct: 786  VRGSDNSMTPFSAFATTRWEYGPESLVRYNGSAAYEIQGENASGFSSGAAMDKMEALANS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    + +++  + +     +   W      I  + L
Sbjct: 846  LPAGTTWAWSGLSLQEKLASGQAMSLYAISILVVFLCLA---ALYESWSVPFSVILVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVTPLAIATGAGANSRVAIGTGIIGGTLTATLLAIFFVPLF 1019

Query: 820  LLFIYDWRAKNAR 832
             + +     + +R
Sbjct: 1020 FVLVKHLFTRKSR 1032


>gi|258512066|ref|YP_003185500.1| protein-export membrane protein SecF [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478792|gb|ACV59111.1| protein-export membrane protein SecF [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 308

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 84/298 (28%), Positives = 142/298 (47%), Gaps = 3/298 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                  +RA  W   +S   ++  + +    G N   DFK G ++    N+ V  + VR
Sbjct: 1   MKPRFDIIRASRWFFLLSGAITVAGVIVFALFGFNLSTDFKSGSEVQFELNQRVPEARVR 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               S+ +         G     V +   P    A  ++ E+   +              
Sbjct: 61  QMFASIGLPLGDTSLTVGGIQQNVVMVTLPEQLTA-KQISEIQAAEHRFFPDAKQDIQVN 119

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V P ++ +  RK +  V+ +A  +++YI IRF++ FA+  I  L+ D    L  FAL  
Sbjct: 120 SVDPFVAEQTARKAVYAVLAAAACIVVYIAIRFEFRFAISGIIALLHDAFIVLAAFALLR 179

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSV 773
            E +LT VAA+LT++GYS+ND +V++DR+R+N+K     T    R +++KS+ + + RS+
Sbjct: 180 REVDLTFVAALLTIVGYSINDTIVIFDRIRENLKIDKPETVDELRAVVNKSLWQVMNRSI 239

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T +   I+ + +  +GG  I +F   +  G+V  A SSIFIA+PI +       K A
Sbjct: 240 RTVLTVLIAAVILYFFGGISIRNFTFALIIGLVSGAYSSIFIASPIWVAWRSRSMKKA 297


>gi|332526572|ref|ZP_08402682.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Rubrivivax benzoatilyticus JA2]
 gi|332110838|gb|EGJ11015.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Rubrivivax benzoatilyticus JA2]
          Length = 1043

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/673 (12%), Positives = 180/673 (26%), Gaps = 47/673 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GL+       PQ  + R+PS  P               + L   
Sbjct: 7   QRPVFAWVIALFIVLFGLIAI-----PQLPIARYPSVAPP-------------SVSLYAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   L       +   L                   +IT++F      E     V 
Sbjct: 49  YPGATPQTLADSVVAPIERELSGVRKLLYFESSVDSSGTAQITVTFQPGTDPELAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V  +L    ++N L   +     ++L     D      +  +  + R  ++++  
Sbjct: 109 NRLKAVEPRLPQTVRQNGLQVESASSGFLMLVGLVSDDGRHDELALNDYMARHLVEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +                P RL     T   ++      N        G       
Sbjct: 169 IDGIGRVQLFGAEQALRVWVL-PERLAAHGLTMGDVAQAIERQNAQIAPGRLGDEPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S                +    +        +        +      
Sbjct: 228 QRVSVPLTVQGQLS-------------SPEEFAAIVLRAGRDGSKVVLGDVARVELGAQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +     +        L         + V         
Sbjct: 275 YAFSNRENGLPATSAALQLSPGANAVRAAQAVQDRLTELAPTLPAGMRHTVSFNTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T A    LV +V+++ +   +  L+      + ++ T A +  LG ++ + +
Sbjct: 335 ISIEKVLYTLAEAMVLVFLVMYVFLQNLRCTLIPAIVAPIALLGTFAAMLALGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           +    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMASEGLSPKAATAKAMQEITGAVVAITLVLTAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      R F+++M LSI +S F A+S+  A+   +++            + F 
Sbjct: 455 PMAFASGSVGVIYRQFSLSMALSIGLSAFLALSLTPALCATLLQPVSAAHPRSRFFAAFN 514

Query: 533 LIPDCIAIQFMR------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              + +  ++ R      +R   V          + L +    +  +  +          
Sbjct: 515 RGFERLTGRYGRGVAALLSRGGRVMAMFAALCLLLVLAWRELPSSFLPEEDQGYFMTSIQ 574

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            P D +  R+                   N +V+     G           +K       
Sbjct: 575 LPADATAERTLDLVKAFEAHVATRPAIASNLVVQGFSFSGSGPNAAMAFTTLKDWDQRDG 634

Query: 647 PLSTIQNTEIVGP 659
             +T +   ++  
Sbjct: 635 ATATEEVWRVMEA 647



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 82/240 (34%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V       Q    S +                 ++V   + ++    ++ 
Sbjct: 255 RDGSKVVLGDVARVELGAQSYAFSNRENGLPATSAALQLSPGANAVRAAQAVQDRLTELA 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             +P               +  I K +  +  + + + + +++  +     L       +
Sbjct: 315 PTLPAGMRHTVSFNTAPFVKISIEKVLYTLAEAMVLVFLVMYVFLQNLRCTLIPAIVAPI 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  +  ++  IG  V+D +VV + +     + +  +S +    
Sbjct: 375 ALLGTFAAMLALGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMASEGLSPKAATA 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++ E  G  V  ++      +PMA   GSV      F++ MA  I ++A  ++ +   +
Sbjct: 433 KAMQEITGAVVAITLVLTAVFIPMAFASGSVGVIYRQFSLSMALSIGLSAFLALSLTPAL 492



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 69/179 (38%), Gaps = 6/179 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +++   +P            +  +   +  ++ ++ + +  L+   +   W   L  
Sbjct: 834  AEMERLAAQLPPGYTVAWTGQSLQERQSASQAPMLMLLSALVVFLVLAALYESWSLPLSV 893

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +  + L +   +    L G+  ++     ++T+IG S  + +++ +  R   +L+     
Sbjct: 894  MLVVPLGLVGAVAAVVLRGLPDDVFFKVGMITIIGLSAKNAILICEFAR---QLHAQGHG 950

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSS 812
              D   ++    L   + TS+A  + VLP+ +  G+      +    +  G++ A   +
Sbjct: 951  LADAALQAARLRLRPILMTSLAFTLGVLPLMLASGASAATQHAIGTGVFGGMLSATLLA 1009


>gi|319795512|ref|YP_004157152.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Variovorax paradoxus EPS]
 gi|315597975|gb|ADU39041.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Variovorax paradoxus EPS]
          Length = 1042

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 67/680 (9%), Positives = 175/680 (25%), Gaps = 40/680 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I   G +           + ++P   P   +                 
Sbjct: 8   QRPVFAWVIAILIMLAGGVAI-----RTLPVSQYPDIAPPTVV---------VSANYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++    +        +       +I+++F      +    +V   + 
Sbjct: 54  SAQALETSVTQVIEQQLKGIDGLLYFKSTSSSAGWAEISVTFRQGIDPDTAQVQVQNKVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L    ++  L     +   +++             + +  +     D I   +  
Sbjct: 114 QATSRLPQAVQQQGLTVAKSQNNFLLIVALYDQTDQRTDTDIADWMASNLRDPISRVDGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP RL       + ++      N        G R         
Sbjct: 174 GSVQAFGA-AYAMRIWLDPHRLASYQLMPSDVTAAIAAQNTQVSVGEIGARPSSAKQQLN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V     +                 +    +   +             +        + 
Sbjct: 233 ATVTALSRL-------------QTPEQFRDIVLKTQADGAVVRLGDVARVEIGSESYTET 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L       +        +   T        A L A           E        S  
Sbjct: 280 TRLNGHPAAGSAVMLAPGANALTTANAVKARIAELEASLPAGLRVAYAEDTTRFVKISIQ 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+F+ +   +  ++   ++ + ++ T  +L+  G ++ + ++ G+
Sbjct: 340 SVIKTLLEAVALVVVVMFLFLQNWRATVIPAITVPVVLLGTFGVLAAFGYSINVLTLFGM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    + +      +           +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERVMHEEGLDAKAATIKSMGEITGALVGIAVVVSAVFLPMTF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLS 529
           FGG      R F++T+  S+ +S+  AI ++ A+                + + +    +
Sbjct: 460 FGGSVGVIYRQFSVTIIASMALSVVVAIVLIPALCARFLKAGTAPRTRGFLGAFNRRFDA 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   +      + +      L   G     + +G + + +      
Sbjct: 520 AQGRYVGLLGRMLGKPWRFAAIYLAIVAGMGALYLSLPGGFLPEEDQGSVMVQLTLPAGA 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                 +   +++   +  +    +  F +      G    Q      +K          
Sbjct: 580 THGRTDAVNRAVEKHFLETEKDTTDTIFTISGWSYSGSGQNQGMAFVSLKDWSERRDASK 639

Query: 650 TIQNTEIVGPKISRELIRKG 669
             Q              R  
Sbjct: 640 RAQAISERAGTALSAQQRDA 659



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +    T+ + +  T G  A FG   N+  +  ++  IG  V+D +VV + +     
Sbjct: 363 WRATVIPAITVPVVLLGTFGVLAAFGYSINVLTLFGMVLAIGLLVDDAIVVVENV--ERV 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           ++   +  +    KS+ E  G  V  ++      LPM  +GGSV      F++ +   + 
Sbjct: 421 MHEEGLDAKAATIKSMGEITGALVGIAVVVSAVFLPMTFFGGSVGVIYRQFSVTIIASMA 480

Query: 807 VAASSSIFIAAPI 819
           ++   +I +   +
Sbjct: 481 LSVVVAIVLIPAL 493



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 72/218 (33%), Gaps = 9/218 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +        A   +         E V                +E +  G   ++ +   +
Sbjct: 819  VPAVQIQGAAAQGMSSGTAMAAIETVAKKQSGTGYAWSGLSYQERLSGGQAPLLFALSIL 878

Query: 681  LIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            ++++    +   W      +  + L +   +   AL G+  ++     +L  IG S  + 
Sbjct: 879  VVFLCLAALYESWSVPFSVMLVIPLGVLGAVIAAALRGLSNDIYFQVGLLATIGLSAKNA 938

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ +   +        +   + + +     L   + TS+A    V+P+A+    G    
Sbjct: 939  ILIIE-FAE--AALRRGVPLLEAVAEGARLRLRPILMTSLAFLAGVIPLALATGAGSGSQ 995

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +    +  G++ A +  IF      L +    A+  R
Sbjct: 996  TAIGTGVFGGVLAATALGIFFVPLFYLLVKRAAARWGR 1033


>gi|94265218|ref|ZP_01288979.1| Hydrophobe/amphiphile efflux-1 HAE1 [delta proteobacterium MLMS-1]
 gi|93454308|gb|EAT04618.1| Hydrophobe/amphiphile efflux-1 HAE1 [delta proteobacterium MLMS-1]
          Length = 1041

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/683 (12%), Positives = 201/683 (29%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+      L    ++++P  +P   +                 +
Sbjct: 8   RPIFASVISIIIVLAGLVS-----LRILPVEQYPDVVPPQVVVQAF---------YPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + +        +        IT+SFA     +  A  V   +Q 
Sbjct: 54  AEVIADSVAAPLEQEINGVDNMIYLESNSTDAGMLMITVSFAMGTDPDQAAIDVNNRVQA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L    ++  +         +++            I  S   +   ID++       
Sbjct: 114 ATARLPQQVRQQGVRVEARSTNMLMVPVLTSPDGRYDPIFISNYTLLNVIDELVRLPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +  RL +   T A ++      N        G +         Y
Sbjct: 174 EASLFGSQDYSMRIWLETDRLARHNLTPADVANALREQNAQFAAGRLGGQPAPPEVAFTY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    ++                 +    I   +                         
Sbjct: 234 AITSPGQL-------------NSPEEFENVILRADDQGGVLRLGDVARAELGSQNYDLSA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T E      A L+    P     +          S   
Sbjct: 281 TYNGTPAVPLGVYLQPGANALATAERVRETLAQLQENFPPGLQYEIPYDTTEFVRISIRE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++V F+ + + +  L+   +I ++++ T   + LLG ++ L ++ G+V
Sbjct: 341 VATTIFVATALVVLVTFVFLQHLRATLIPVAAIPVSLVGTFTGMYLLGFSINLLTLFGLV 400

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD+ I+V E +      K  + + +      +    +  S +  +     + F 
Sbjct: 401 LAIGIVVDNAIIVMENVERLIMEKGLNAYQAAVETVRQVAGAVVASTLVLVAVFAPVAFL 460

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDINPLSRFFLI 534
           GG +    R FA+T+ +S+++S   A+++  AM   ++  +         +       L 
Sbjct: 461 GGLSGELYRQFAVTIAVSVVVSGIVALTLTPAMCAKLLDKQPHTAAAPFRLFNRVFAQLT 520

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A      R W +G++I  + C+  ++    L  G+  +    + ++  +    S +
Sbjct: 521 SFFVACAGFMLRRWALGLTIFVACCAATIMLLERLPSGLVPQEDQGVALVVGQLPPASAL 580

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV---LEMVKKKITEIVPLSTI 651
             +              +    F     +       ++        +        P    
Sbjct: 581 GRSEAVRDQLSRQLVAMEEVGEFTSIAGFDIFSMSLRSNSLLGFANLTDWRQRPAPEQHA 640

Query: 652 QNTEIVGPKISRELIRKGIVGVI 674
                    +   +    I   I
Sbjct: 641 GALAGRIMGMGFAIQEANIFAFI 663



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 86/239 (35%), Gaps = 6/239 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  D+S          L        +++A    +     ++ E  P     
Sbjct: 265 DVARAELGSQNYDLSATYNGTPAVPLGVYLQPGANALATAERVRETLAQLQENFPPGLQY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  +  R  IR+    + ++   +++  ++  +     L  +  + + +  T    
Sbjct: 325 EIPYDTTEFVRISIREVATTIFVATALVVLVTFVFLQHLRATLIPVAAIPVSLVGTFTGM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   NL  +  ++  IG  V++ ++V + +     +    ++      +++ +  G 
Sbjct: 385 YLLGFSINLLTLFGLVLAIGIVVDNAIIVMENV--ERLIMEKGLNAYQAAVETVRQVAGA 442

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            V +++       P+A  G   G +   FA+ +A  +VV+   ++ +   +   + D +
Sbjct: 443 VVASTLVLVAVFAPVAFLGGLSGELYRQFAVTIAVSVVVSGIVALTLTPAMCAKLLDKQ 501



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 59/154 (38%), Gaps = 10/154 (6%)

Query: 677  AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + + + +  ++ +W   L   T +   +        L G   ++     +L LIG +  
Sbjct: 878  MLMVFLILAAQYERWTLPLAVATAVPFGVLGAASAAWLRGFPNDIYFQVGLLVLIGLAAK 937

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---S 792
            + +++ +   +N       +S  +    +  +     V T++   I VLP+   GG   +
Sbjct: 938  NAILIVEFAAQNRAA---GMSPAEAAITAARQRFRAIVMTALTFIIGVLPLVFAGGAGAA 994

Query: 793  VIGSFAIPMAFGIV-VAASSSIFIAAPILLFIYD 825
                    +  G++  +  + IF+  P+   + +
Sbjct: 995  SRQEIGTVVLGGMLAASTLALIFV--PLFYMLLE 1026


>gi|223934823|ref|ZP_03626742.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [bacterium Ellin514]
 gi|223896276|gb|EEF62718.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [bacterium Ellin514]
          Length = 1059

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 65/626 (10%), Positives = 168/626 (26%), Gaps = 43/626 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L        +  + ++P+  P +              +     
Sbjct: 8   RPVFAWVVSLLIMLMGGLAI-----TKLPVAQYPNIAPPSV---------SVTAIYAGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + +        +     Q+ ITL F      +    +V   LQ 
Sbjct: 54  AETLQDTVTSVIEQQMNGIDGLLYMSSTSEAAGQSTITLYFQPGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +         ++    +        I     I    +D I       
Sbjct: 114 ATPSLPASVQQQGVTVAKATRNFLLFFTLSTGDGSMDEIALGNYIAANVLDPIRRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +P ++       + +       N        G R   +      
Sbjct: 174 EANLFGSQ-YAMRIWMNPDKMNSFNLGASDVINAIQAQNIQVPVGQLGSRPAIEGQQLNV 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +                 +             R        +           
Sbjct: 233 TLQGRSTL-------------RTAEEFGRIQLRVNADGSRVLLRDVAKVSLGGQDYGTQA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +   T +        L               +      S   
Sbjct: 280 RVNGRPSAAVAIKLTPTANALSTADAVREKVKELAKFFPQGVQVDFPYDSSAFVRISVEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+    + + ++ T A +S  G ++ + ++ G+V
Sbjct: 340 VIKTLVEAIVLVFLVMYLFLQNIRATLIPTIVVPVALLGTFATMSAFGFSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +     S+    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPQEATKKAMSQITGALIGITLVLTAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F++++  S++ S+  A+S+  A+   +           +       +   
Sbjct: 460 GGSVGAIYRQFSLSLVASMVFSVILAMSLTPALCATLLKPVEKGHHHEKKGFFGWFNRGF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +A     A  + +   ++    ++  +         + +G I   +    
Sbjct: 520 AASSRKYQSIVARMLGHAAAYLLLYGVILVAVAMLYVKLPSSFLPEEDQGYILTSIQLPV 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDG 613
                     L+  +   +     D 
Sbjct: 580 GATQERTLEVLKKTEDYYLKQPETDS 605



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 97/280 (34%), Gaps = 9/280 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S          +   G +     +   ++ +  N      ++R   +    G        
Sbjct: 221 SRPAIEGQQLNVTLQGRSTLRTAEEFGRIQLRVNADGSRVLLRDVAKVSLGGQDYGTQAR 280

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI---RKG 669
                   +  +   +       + V++K+ E+                S  +     + 
Sbjct: 281 VNGRPSAAVAIKLTPTANALSTADAVREKVKELAKFFPQGVQVDFPYDSSAFVRISVEEV 340

Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           I  ++ + + + + +++  +     L     + + +  T    + FG   N+  +  ++ 
Sbjct: 341 IKTLVEAIVLVFLVMYLFLQNIRATLIPTIVVPVALLGTFATMSAFGFSINVLTMFGMVL 400

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG  V+D +VV + +     +    +S ++   K++++  G  +  ++      +PMA 
Sbjct: 401 AIGLLVDDAIVVVENV--ERIMSEEGLSPQEATKKAMSQITGALIGITLVLTAVFIPMAF 458

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +GGSV      F++ +   +V +   ++ +   +   +  
Sbjct: 459 FGGSVGAIYRQFSLSLVASMVFSVILAMSLTPALCATLLK 498



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 81/229 (35%), Gaps = 8/229 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S     L +L     ++ +   E+   +      G +       E +K        L 
Sbjct: 789  NRSGTMVPLSALATLKWTYGSPRLERYNGLASMEIVGTAAPGKSSGEAMKAMEEMAKQLP 848

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                 E  G      L       +  +S + + + +   ++ W      +  + L I   
Sbjct: 849  VGIGYEWTGQSYEERLSGSQAPALYALSLLIVFLCLAALYESWSIPFSVLLVVPLGIVGA 908

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    + G+  ++     +L  IG S  + +++ +  +    L    +       ++++ 
Sbjct: 909  LVAATMRGLPNDVYFKVGLLATIGLSTKNAILIIEYAKD---LQAAGMGLIQATLEAVHL 965

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             L   + TS+A  + V+P+A+    G +   +    +A G++ A   +I
Sbjct: 966  RLRPILMTSLAFVLGVMPLALSHGAGSASQHAIGTGVAGGMISATVLAI 1014


>gi|82701821|ref|YP_411387.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrosospira multiformis ATCC
           25196]
 gi|82409886|gb|ABB73995.1| Hydrophobe/amphiphile efflux-1 HAE1 [Nitrosospira multiformis ATCC
           25196]
          Length = 1057

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/684 (11%), Positives = 184/684 (26%), Gaps = 45/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +GL+      L    + +FP   P               + ++ D 
Sbjct: 9   RPIFASVLSIIIVVVGLVA-----LRNLPIAQFPEITPPM-------------VQIDADY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  + +  +  +   L           +        + L+F      +    +   
Sbjct: 51  PGASAEVVAESVARPIEVQLPGIDNLLYYESTSSNDGHMTMKLTFEIGTDVDIAQVQTQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +    +L  +  +  +         + +   +        I  S   + + +D +   
Sbjct: 111 RQRLAEPQLPDEVVRQGITVKKTSPDLLAVIALSSSDPRHDTIYLSNYALLRVLDNVKRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP R+ QL  T   ++      N        G        
Sbjct: 171 PGVGDAIIFGSQNYSMRLILDPVRMAQLDLTPTDIAAVVREQNRDFPAGRIGREPSPKGT 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +S             +  +    I                 +       
Sbjct: 231 ELTIPVITQGRMS-------------EVKEFEDMIVRAYPDGSMVRLRDVARVELGAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +       +   T+         L           +          
Sbjct: 278 DLEGRWNGKPNTFLLTFLAPGANALDTVHRVRQEMDKLARSFPAGVSYDIPYDTTIFIEV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  ++   ++ +++I TLA ++ LG ++   ++
Sbjct: 338 SIKEVLKTLVEATLLVILVVFVFLQSWRATIIPAVAVPISLIGTLAGMAALGFSINTLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +    R+      +  +        +    +      V +
Sbjct: 398 FGMVLAIGIVVDDAIVVVENVERHMREGLPPREAARVAMDEVAGPVIAIVLVLGAVFVPV 457

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPL 528
            F G   G   + FAIT+ LS+ IS F A+++  A+   I         K  K  + +  
Sbjct: 458 AFLGGITGELYKQFAITIALSVAISGFVALTLSPALCALILKPGHGEPAKYWKLFNRSFD 517

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                  + + +   R+       +++  +         G     + +G     V     
Sbjct: 518 WMQTRYTNGVGMVLKRSMIALCIFAVMIFVLLGLFRTIPGSFLPEEDQGYFITVVQLPDG 577

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                    L  ++   +S            +          Q  +   ++   T     
Sbjct: 578 ASKERTIDVLSKVEQYFLSIPAVHSTDALAGQNFVFGTRGANQATMFVPLQSWDTRKSAG 637

Query: 649 STIQNTEIVGPKISRELIRKGIVG 672
             +        +   ++    I+ 
Sbjct: 638 EHVTGLIASAFQEFAKIPEALILA 661



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 78/248 (31%), Gaps = 11/248 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             + L+ V +   +     ++  N       L           A   + ++  + +     
Sbjct: 796  MIPLNSVITTEFTSGPDPVTHFNGFNSALVLGGAASGYSSGQALDALEQIADEILAPKGY 855

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                        +       K ++    + + + + +   ++ W   L  I  +   I  
Sbjct: 856  TIDWSGISFQERQAGG----KSVLVFAFALLMVFLVLAALYESWSVPLAVILAIPFGILG 911

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L    +  +  ++     ++TLIG S  + +++ +      + Y       D   ++  
Sbjct: 912  ALLAIWVRELTNDIYFQIGLVTLIGLSAKNAILIVEFAN---QRYANGEPLLDAAMEAAR 968

Query: 767  ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + TSMA  + V P+ +    G +   S    +  G++ A   +IF      + I
Sbjct: 969  LRFRPIIMTSMAFILGVFPLVIASGAGAASRNSIGTGVFGGMLAATFLAIFFVPLFFVVI 1028

Query: 824  YDWRAKNA 831
                 +  
Sbjct: 1029 RKMTHRRG 1036



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 76/190 (40%), Gaps = 9/190 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           + ++ + +     V      +T I      +E+++  +   ++  + + +++     W  
Sbjct: 310 QEMDKLARSFPAGVSYDIPYDTTIFIEVSIKEVLKTLVEATLLVILVVFVFLQ---SWRA 366

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +     + + +  TL   A  G   N   +  ++  IG  V+D +VV + +    +   
Sbjct: 367 TIIPAVAVPISLIGTLAGMAALGFSINTLTLFGMVLAIGIVVDDAIVVVENV---ERHMR 423

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             +  R+    +++E  G  +   +      +P+A  G   G +   FAI +A  + ++ 
Sbjct: 424 EGLPPREAARVAMDEVAGPVIAIVLVLGAVFVPVAFLGGITGELYKQFAITIALSVAISG 483

Query: 810 SSSIFIAAPI 819
             ++ ++  +
Sbjct: 484 FVALTLSPAL 493


>gi|51594844|ref|YP_069035.1| RND family multidrug efflux protein [Yersinia pseudotuberculosis IP
           32953]
 gi|51588126|emb|CAH19732.1| multidrug efflux protein, RND family [Yersinia pseudotuberculosis
           IP 32953]
          Length = 1041

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/684 (10%), Positives = 192/684 (28%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++      L    + ++P   P +                    
Sbjct: 9   RPVFAWVIAIVIMLGGVVA-----LETLPIAQYPDVAPPSI---------SIKATYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + L        S     N KI  +F      +    +V   +Q 
Sbjct: 55  AETLENSVTQVIEQELTGLDGLLYFSSSSGSDGNAKIVATFKQGTNADTAQVQVQNKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + +   +  T  +   +++     ++      + +  ++    D +   E   
Sbjct: 115 ALTRLPTEVQAQGVTVTKSQTNFLLIMSLYDEKDKHTGTDIADYLVSNLQDPLARLEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P++L       + +       N        G            
Sbjct: 175 SVQVFGSQ-YAMRIWLNPTKLAAYNLMPSDVQSAITAQNTQVSAGKIGALPSGKEQQLTA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +             +           
Sbjct: 234 TVMAQSRL-------------KTPEQFNNIIVKSDSTGAVVRLRDVARVELGNEDYSVTT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T E     AA               + +      S   
Sbjct: 281 RLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELNLPDGYKIAYPKDSTDFIKVSVEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ + ++ T  +L++ G ++   ++ G+V
Sbjct: 341 VVKTLIEAILLVVIVMYIFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    R++      + +   S   S +    +      + + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERVMREDNLPPREATEKSMSEISSALIGIALVLSAVFLPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------IDINPLS 529
           GG      R F+IT+  ++ +S+  A+++  A+    ++               +     
Sbjct: 461 GGATGVIYRQFSITIVSAMALSVLVALTLTPALCATFLKPNHKPPSEHGFFGGFNRRYDR 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R+  + +  ++L  +  +  +         + +G + +        
Sbjct: 521 MQTRYESLVGHVIHRSLRYLLIYAVLIGVMCVLFIRLPTGFLPTEDQGDVMVQYTLPAGA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                    ++++   ++ +  + +  F +      G           +K         +
Sbjct: 581 TSGRTMEVSKAVENYFMTQEKDNTKAVFTISGFGFSGSGQNAGMAFIALKHWRDRPGSEN 640

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
           T         K    +    I  +
Sbjct: 641 TATAIADRAMKALSSIRDAQIFSM 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 99/287 (34%), Gaps = 6/287 (2%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            G   S      +  ++    L     F   I         V L  V       +   ++
Sbjct: 220 IGALPSGKEQQLTATVMAQSRLKTPEQFNNIIVKSDSTGAVVRLRDVARVELGNEDYSVT 279

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +        +  +     +++A    ++    +    +P               +  + 
Sbjct: 280 TRLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELNLPDGYKIAYPKDSTDFIKVSVE 339

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           + +  +I + + ++I ++I  +     L     + + +  T G  A+FG   N   +  +
Sbjct: 340 EVVKTLIEAILLVVIVMYIFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGM 399

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  IG  V+D +VV + +     +   ++  R+  +KS++E     +  ++      LPM
Sbjct: 400 VLSIGLLVDDAIVVVENV--ERVMREDNLPPREATEKSMSEISSALIGIALVLSAVFLPM 457

Query: 787 AVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A +GG+       F+I +   + ++   ++ +   +         K 
Sbjct: 458 AFFGGATGVIYRQFSITIVSAMALSVLVALTLTPALCATFLKPNHKP 504



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 109/361 (30%), Gaps = 25/361 (6%)

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           +   ++     +A S+I D+ I ++    V          G +      +  +  T+   
Sbjct: 640 NTATAIADRAMKALSSIRDAQIFSMTPPAV-------DGLGQSNGFTFELQATGDTSREQ 692

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           +  +   +I       I  +  +        + +     +   +G+SI     ++   + 
Sbjct: 693 LLTLRDQLISKANKDPILASVRANTLQQMPQLQVDIDNDKVAALGLSISDVNATLSAAWG 752

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE------------ 614
                    +G ++   +       S      +    G                      
Sbjct: 753 GTYINDFIDRGRVKKVYMQGDVDTRSKPEDLNQWFVRGSSDAMTSFSAFATTRWIYGPET 812

Query: 615 -KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              +  +  Y+     A          ++ ++       +    G      L     + +
Sbjct: 813 LSRYNGQTSYEIQGQAASGSSSGTAMDQMEKLAAELPGTSYAWSGLSYQERLASGQALSL 872

Query: 674 -IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             IS + + + +   ++ W      +  + L I   +    L G+E ++    A+LT +G
Sbjct: 873 YAISILVVFLCLAALYESWSVPFSVMMVIPLGIIGAVAAATLRGLENDIYFQVALLTTLG 932

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +  + +++ +   +    Y           +     L   + TS+A    V+P+A+  G
Sbjct: 933 LASKNAILIVE-FAE--AAYLRGEPLVAAALQGAATRLRPILMTSLAFIAGVMPLAMSTG 989

Query: 792 S 792
           +
Sbjct: 990 A 990


>gi|332286831|ref|YP_004418742.1| AcrB/AcrD/AcrF family protein [Pusillimonas sp. T7-7]
 gi|330430784|gb|AEC22118.1| AcrB/AcrD/AcrF family protein [Pusillimonas sp. T7-7]
          Length = 1029

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/514 (12%), Positives = 156/514 (30%), Gaps = 39/514 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  IGL+        +  +  +P+      +S+  D +G         
Sbjct: 9   KRPVFATVLSLIIVLIGLIS-----YDRLTVREYPAIDEP-VVSVRTDYKG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + ++   +     R  ++ I + F  +R  +  A  V   +  
Sbjct: 55  SPEVVESQVTKPLEDQLAGIEGVDVMTSRSRSERSYINIKFNLTRDPDAAAADVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  + ++         IV    +      + +E S  I R    ++ +     
Sbjct: 115 ARRYLPDEIDEPIISKVEADSSPIVYVGVS--TGSYNQLEASDYINRYIKTRLSVLPGAA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    D ++L         +       N          +    +  +  
Sbjct: 173 EVRIYGERLPSMRIYIDRAKLAAYGLIVQDVEAALRQQNVLIPAGRIESKQREFTVTSST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +   ++    +           ++           
Sbjct: 233 DLQST--------------------EQFRNVIVSTVNGYPVRLSDVADVQIGPLDDRVLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +A  +              +           +   +      S   
Sbjct: 273 RYNGQPSLTIGITKQATANPLELSSYVRKEVEEINQNLPGGMSLAMTYDSSVFIQESIKS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F  +   +  L+   +I +++I    ++  +G ++   ++  +V
Sbjct: 333 VYATVIEAIVLVVLVIFFFLRSLRASLIPIVTIPVSLIGACGIMYFMGFSINTLTLLSMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + ++   +  +G       +    +T +     L F  
Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGKTRLEAAFLGAKEIGFAVVAMTLTLVTVYAPLAFAT 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMI 512
           G   R    FA+T+  ++L+S F A+++   M  
Sbjct: 453 GRTGRLFIEFALTLAGAVLVSGFVALTLTPMMCS 486



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 87/250 (34%), Gaps = 7/250 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PV LS V           +  +        +   +    + +  +  +    ++I + +P
Sbjct: 252 PVRLSDVADVQIGPLDDRVLARYNGQPSLTIGITKQATANPLELSSYVRKEVEEINQNLP 311

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          +E I+     VI + + +++ I+   +    +L  I T+ + +  
Sbjct: 312 GGMSLAMTYDSSVFIQESIKSVYATVIEAIVLVVLVIFFFLRSLRASLIPIVTIPVSLIG 371

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             G     G   N   + +++  IG  V+D +VV + +    +      +  +       
Sbjct: 372 ACGIMYFMGFSINTLTLLSMVLAIGLVVDDAIVVLENI---FRHIEEGKTRLEAAFLGAK 428

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     V  ++       P+A   G        FA+ +A  ++V+   ++ +   +   +
Sbjct: 429 EIGFAVVAMTLTLVTVYAPLAFATGRTGRLFIEFALTLAGAVLVSGFVALTLTPMMCSTV 488

Query: 824 YDWRAKNARI 833
              +A + R+
Sbjct: 489 LRHQAGHGRL 498



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 60/156 (38%), Gaps = 9/156 (5%)

Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            G + ++ +     IY+ +      W   L  + ++ L +T  L    L G   ++ +  
Sbjct: 845 AGSIYLVFAMALAFIYLVLAAQFESWRNPLIIMLSVPLSMTGGLLALWLTGGTLSIYSQI 904

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++TL+G      +++ +      +L    +   + + ++    L   + T+ A  + VL
Sbjct: 905 GLITLVGLITKHGILIVEF---TNQLRAEGVEKFEAVAQASVMRLRPILMTTGAMVLGVL 961

Query: 785 PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           P+A     G          +  G+ +    ++F+  
Sbjct: 962 PLAYASGAGAESRQQIGWVLVGGLSLGTILTLFVVP 997


>gi|33593095|ref|NP_880739.1| putative efflux system transmembrane protein [Bordetella pertussis
           Tohama I]
 gi|33563470|emb|CAE42354.1| putative efflux system transmembrane protein [Bordetella pertussis
           Tohama I]
 gi|332382507|gb|AEE67354.1| putative efflux system transmembrane protein [Bordetella pertussis
           CS]
          Length = 1076

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 84/658 (12%), Positives = 176/658 (26%), Gaps = 48/658 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVALFILLTGILAI-----PNMPVSQYPDVAPPA-------------ITITATY 49

Query: 63  DDFV-NGFLQMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                    +  +  +   L   +G+  +        Q++IT +FA     +     V  
Sbjct: 50  PGASAKEVAESVTSIIEDQLNGAKGLLYYESVSDSYGQSQITATFAPGTDPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V ++L V   +  L         +++   +           +  I R   + +   
Sbjct: 110 RVSNVTAQLPVAVMQQGLQYEQTSAGFLMIVTLSSTDGTLDQTALADYITRNVKNPVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP +L     + A+++      N        G     DS 
Sbjct: 170 PGVGQFQLFAAPR-AMRIWVDPDKLVGFNLSMAEVNQAISQQNVLISAGSIGAPPNPDSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    ++S I                   +        +        I       
Sbjct: 229 RATATVIVNGQLSTIE-------------GFGQIVLRANTDGSKVLLRDVARIEVGADNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G  L                +   T E      A L           +          
Sbjct: 276 QFGARLNGKPTAAFAIVLSPDANALATAEGVRQQMASLSQYFPSNIRYDIPYDTAPYVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + + ++    ++  LG ++ + ++
Sbjct: 336 SIEQVIHTLVEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMLGAFVVMLALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +      +    I    +  +   + 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERIMASEGLSPKEATKKAMPQISGAIVGITLVLVTVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           L F  G      R F++ M +SI  S F A+S   A+   I          +K       
Sbjct: 456 LAFMTGSVGVIYRQFSVAMAVSIFFSAFLALSFTPALCATILKPIPKGHHQEKKGFFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    +            G  +     +  +       L      +      V   
Sbjct: 516 NRKFDATTHNYQNWVSRILHKGGRMMLAFALLVVLLGWLYMRLPSSFLPEEDQGYVVSNI 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                +     +E ++  +  F+N    +N +    Y    +     +     K  +E
Sbjct: 576 ELPTGASANRTIEVIEEVENYFRNIPAVENVITVQGYSFNGNGLNAAIAFTTLKDFSE 633



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +           +     +++A    +      +++  P +   
Sbjct: 264 DVARIEVGADNYQFGARLNGKPTAAFAIVLSPDANALATAEGVRQQMASLSQYFPSNIRY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +         +  I + I  ++ + + + + +++  +   + L     + + +       
Sbjct: 324 DIPYDTAPYVKVSIEQVIHTLVEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMLGAFVVM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  + A++  IG  V+D +VV + +     + +  +S ++   K++ +  G 
Sbjct: 384 LALGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERIMASEGLSPKEATKKAMPQISGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  ++      LP+A   GSV      F++ MA  I  +A  ++     +
Sbjct: 442 IVGITLVLVTVFLPLAFMTGSVGVIYRQFSVAMAVSIFFSAFLALSFTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 60/147 (40%), Gaps = 7/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  + L +   +    + G+  ++     ++T+IG +  + +++ +  +   
Sbjct: 891  SWAIPLSVMLVVPLGMLGAVALVTVLGMSNDVYFQVGMVTVIGLAAKNAILIVEFAKD-- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
              Y       +   ++        + TS+A  + V+P+A+    G +   +  I +  G+
Sbjct: 949  -QYARGQGLYESAVEAARLRFRPILMTSLAFILGVVPLAIATGAGAASQRAVGIGVLGGM 1007

Query: 806  VVAA-SSSIFIAAPILLFIYDWRAKNA 831
            + A   + IF+    ++ +  ++ +  
Sbjct: 1008 LAATPFAVIFVPTFFVVVLGLFKTRPR 1034


>gi|315500252|ref|YP_004089055.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Asticcacaulis excentricus CB 48]
 gi|315418264|gb|ADU14904.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Asticcacaulis excentricus CB 48]
          Length = 1038

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/576 (11%), Positives = 160/576 (27%), Gaps = 46/576 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL           ++++P                   + +    
Sbjct: 9   RPIFAWVVAIVIMLAGLLSI-----RTLPVEQYPDIALP-------------QVRINASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        I   S       +TL F      +    +V  
Sbjct: 51  PGASAKTVEDSVTQIIEQGMTGLDRLKYITASSSDSGSANVTLVFEAGTNIDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q V ++L  D +   +         +++             +    ++    D +   
Sbjct: 111 QVQAVINRLPQDVQAQGVRVNKASNNMLMVISLYSTDGSLTNADLGDYLVSNMQDTLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    +P +L     T A +       N          +   D  
Sbjct: 171 DGVGESNVFGSG-YAMRIWLNPEKLVAFNLTPADVVTAVRAQNAQVSAGQLAAQPTTDDI 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    I   +      +      +       
Sbjct: 230 ALNATITSQSRLTTAD-------------EFQNIIVKSDTSGATVYLRDVARVELGQQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +          S     +   T E        L           +   +      
Sbjct: 277 DSISRINGQPATGIAISLATGANALKTAELVKAEMEKLSKSFPKNITYAIPNDSTDFIKL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  ++   ++ + ++ TL +L+  G ++ L ++
Sbjct: 337 SIKEVVKTLIEAIVLVFIVMYLFLQNWRATIIPTIAVPVVLLGTLGILAAFGYSINLLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +      +           +    +      V 
Sbjct: 397 FGLVLAIGLLVDDAIVVVENVERVMHEEGLDPKEATRKSMDEITGALIGIGLVLSAMFVP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +   +   I     +K +D    +    
Sbjct: 457 MAFFGGTQGIIYRQFSITIVSAMALSVLVALILTPPLCATI-----LKPVDPQRHAEKKG 511

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
                   F RA    +G         +  L  +G+
Sbjct: 512 FFGWFNKSFTRASHGYMGAVGRIIGKPLRYLVIYGM 547



 Score = 88.2 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 96/240 (40%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       Q  D   +        +        +++    +++   +K++
Sbjct: 256 TSGATVYLRDVARVELGQQSYDSISRINGQPATGIAISLATGANALKTAELVKAEMEKLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P +             +  I++ +  +I + + + I +++  + W   +     + +
Sbjct: 316 KSFPKNITYAIPNDSTDFIKLSIKEVVKTLIEAIVLVFIVMYLFLQNWRATIIPTIAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  TLG  A FG   NL  +  ++  IG  V+D +VV + +     ++   +  ++   
Sbjct: 376 VLLGTLGILAAFGYSINLLTMFGLVLAIGLLVDDAIVVVENV--ERVMHEEGLDPKEATR 433

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
           KS++E  G  +   +      +PMA +GG   +I   F+I +   + ++   ++ +  P+
Sbjct: 434 KSMDEITGALIGIGLVLSAMFVPMAFFGGTQGIIYRQFSITIVSAMALSVLVALILTPPL 493



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      I  L L +   L      G++ ++     +LT IG S  + +++ +  R   
Sbjct: 889  SWTIPFSVILVLPLAVLGALVATWGRGLDNDIFFQVGLLTTIGLSCKNAILIVEYAR--- 945

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L    +   D   ++    L   + TS A    VLP+A+    G     +    +  G+
Sbjct: 946  TLQERGMGLIDATLEASRIRLRPILMTSFAFTFGVLPLALANGAGSGAQHAIGTGLIGGV 1005

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + +     +  R
Sbjct: 1006 LSATLLAIFYIPLFFVLVQKVFNRKYR 1032


>gi|66045522|ref|YP_235363.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63256229|gb|AAY37325.1| Hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 1047

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/632 (11%), Positives = 167/632 (26%), Gaps = 52/632 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPSLPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEDELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIYTLNYKDGAASKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPAS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSAVHLSDVARVAVGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVEQRLTELSVNFPEGVGFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGKFTHRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            V        S      + L+   +S +    
Sbjct: 575 DVQLPPGATRSRTDLTAQLLENYMLSREATGA 606



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R +E    +++   P 
Sbjct: 262 VHLSDVARVAVGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVEQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVGFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLF-IYDWRAKN 830
            A    + +     ++ +   R K 
Sbjct: 1009 ATLLGVVLVPIFFVWVLSVLRRKP 1032


>gi|327193578|gb|EGE60467.1| putative multidrug efflux protein, Acr/RND family [Rhizobium etli
           CNPAF512]
          Length = 1060

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/666 (10%), Positives = 164/666 (24%), Gaps = 37/666 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  +   +G +        Q  + ++P+ +P               + +    
Sbjct: 9   RPVLANVLALVFVLVGAVALF-----QLPVAQYPNVVPPT-------------VQVTTRF 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +     +         +    + ++FA     +     V  
Sbjct: 51  PGASAQTLVDTVALPIEQQVNGVQDMLYMQSTSASDGTYSLIVTFAIGTDPDQAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L    +   + T  +    +             ++  S   +    +++   
Sbjct: 111 RVAIAMSSLPEAVQFQGVTTQKKSTAILGFVSLTSPDSRYDSLFLSNYAVINLQNELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+ L+    T   +       +        G+  +    
Sbjct: 171 PGVGNVTVFGAGQYAMRIWMDPNLLQARGLTPQDVVNVVQQQSQEVTAGQIGIPPVPQGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +     ++           +   ++ ++       G R         +       
Sbjct: 231 VFQYTLNVNGRLN-----------EAADYENIIVKVESGQGGRITRVRDIGRVELGAQTY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                               + +     +        L     P     V          
Sbjct: 280 SQSFTQNGRPAAGIGIFQLPEANAIAVAQAVDAKMEELSKSFPPGLEYHVPFDTTKFVKA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+ + +   +  LV   ++ + +I   A ++ LG T+ L ++
Sbjct: 340 SIDEVYVTLIEAGVLVLIVILVFLQDWRAMLVPATTVPVTIIGAFAAMAALGFTVNLSTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIAT 474
             IVL IG+ VD  I++ E +        S   + +            I    +   I  
Sbjct: 400 FAIVLAIGIVVDDAIVIVEGVARHIEAGMSGRKAAEKAMEELLGPVIGITLVLMAVFIPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   R FA+ +  + LIS   A+++        +R              F   
Sbjct: 460 AFLPGLTGQLYRQFALVIAATALISAINAVTLKPTQCALWLRAPVPFEKRNVVYRGFNKG 519

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            D     +          S L ++ ++ L+              + +       V   + 
Sbjct: 520 YDWGERHYAGLIGLMTRHSGLMAVAALALIGLAIWGLTRLPTAFLPIEDQGYVLVSAQLP 579

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
               +      +       E    V                 +    +  +V     +  
Sbjct: 580 DGASKERTDAVMEEVGKIAEDTPGVDQVLTISGLSVLDNNASLQNAGVAYVVLKDWDERG 639

Query: 655 EIVGPK 660
           +  G  
Sbjct: 640 KEKGQD 645



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G +  I +   +L+Y  +      W   L  I+ + L +  T+      G+  NL     
Sbjct: 874  GQIYFIFALAMLLVYFVLAGQYESWILPLAVISAVPLALLGTVAALTAAGVANNLYTQIG 933

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LI  +  + +++ +  R+        +   D   ++        + TS A  + VLP
Sbjct: 934  LILLIALAAKNAILIVEYAREKRAE---GMEILDAAVEAARLRFRPILMTSFAFILGVLP 990

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + +    G S   S  I +  G++ +   +I       + +        R
Sbjct: 991  LVLATGAGASARKSIGISVFSGMIASTCLAILFVPSFYVLLQRLEEYWKR 1040



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 76/188 (40%), Gaps = 9/188 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +E + K     +      +T         E+    I   ++  I +L+++    
Sbjct: 308 QAVDAKMEELSKSFPPGLEYHVPFDTTKFVKASIDEVYVTLIEAGVLVLIVILVFLQ--- 364

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       A  G   NL+ + A++  IG  V+D +V+ + +    
Sbjct: 365 DWRAMLVPATTVPVTIIGAFAAMAALGFTVNLSTLFAIVLAIGIVVDDAIVIVEGV---A 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +     +S R   +K++ E LG  +  ++      +P A      G +   FA+ +A   
Sbjct: 422 RHIEAGMSGRKAAEKAMEELLGPVIGITLVLMAVFIPAAFLPGLTGQLYRQFALVIAATA 481

Query: 806 VVAASSSI 813
           +++A +++
Sbjct: 482 LISAINAV 489


>gi|153948753|ref|YP_001402539.1| RND efflux transporter [Yersinia pseudotuberculosis IP 31758]
 gi|152960248|gb|ABS47709.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pseudotuberculosis IP 31758]
          Length = 1041

 Score =  186 bits (471), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/684 (10%), Positives = 192/684 (28%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++      L    + ++P   P +                    
Sbjct: 9   RPVFAWVIAIVIMLGGVVA-----LETLPIAQYPDVAPPSI---------SIKATYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + L        S     N KI  +F      +    +V   +Q 
Sbjct: 55  AETLENSVTQVIEQELTGLDGLLYFSSSSGSDGNAKIVATFKQGTNADTAQVQVQNKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + +   +  T  +   +++     ++      + +  ++    D +   E   
Sbjct: 115 ALTRLPTEVQAQGVTVTKSQTNFLLIMSLYDEKDKHTGTDIADYLVSNLQDPLARLEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P++L       + +       N        G            
Sbjct: 175 SVQVFGSQ-YAMRIWLNPTKLAAYNLMPSDVQSAITAQNTQVSAGKIGALPSGKEQQLTA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +             +           
Sbjct: 234 TVMAQSRL-------------KTPEQFNNIIVKSDSTGAVVRLRDVARVELGNEDYSVTT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T E     AA               + +      S   
Sbjct: 281 RLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELNLPDGYKIAYPKDSTDFIKVSVEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ + ++ T  +L++ G ++   ++ G+V
Sbjct: 341 VVKTLIEAILLVVIVMYIFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    R++      + +   S   S +    +      + + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERVMREDNLPPREATEKSMSEIASALIGIALVLSAVFLPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------IDINPLS 529
           GG      R F+IT+  ++ +S+  A+++  A+    ++               +     
Sbjct: 461 GGATGVIYRQFSITIVSAMALSVLVALTLTPALCATFLKPNHKPPSEHGFFGGFNRRYDR 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R+  + +  ++L  +  +  +         + +G + +        
Sbjct: 521 MQTRYESLVGHVIHRSLRYLLIYAVLIGVMCVLFIRLPTGFLPTEDQGDVMVQYTLPAGA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                    ++++   ++ +  + +  F +      G           +K         +
Sbjct: 581 TSGRTMEVSKAVENYFMTQEKDNTKAVFTISGFGFSGSGQNAGMAFIALKHWRDRPGSEN 640

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
           T         K    +    I  +
Sbjct: 641 TATAIADRAMKALSSIRDAQIFSM 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 99/287 (34%), Gaps = 6/287 (2%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            G   S      +  ++    L     F   I         V L  V       +   ++
Sbjct: 220 IGALPSGKEQQLTATVMAQSRLKTPEQFNNIIVKSDSTGAVVRLRDVARVELGNEDYSVT 279

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +        +  +     +++A    ++    +    +P               +  + 
Sbjct: 280 TRLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELNLPDGYKIAYPKDSTDFIKVSVE 339

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           + +  +I + + ++I ++I  +     L     + + +  T G  A+FG   N   +  +
Sbjct: 340 EVVKTLIEAILLVVIVMYIFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGM 399

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  IG  V+D +VV + +     +   ++  R+  +KS++E     +  ++      LPM
Sbjct: 400 VLSIGLLVDDAIVVVENV--ERVMREDNLPPREATEKSMSEIASALIGIALVLSAVFLPM 457

Query: 787 AVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A +GG+       F+I +   + ++   ++ +   +         K 
Sbjct: 458 AFFGGATGVIYRQFSITIVSAMALSVLVALTLTPALCATFLKPNHKP 504



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 109/361 (30%), Gaps = 25/361 (6%)

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           +   ++     +A S+I D+ I ++    V          G +      +  +  T+   
Sbjct: 640 NTATAIADRAMKALSSIRDAQIFSMTPPAV-------DGLGQSNGFTFELQATGDTSREQ 692

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           +  +   +I       I  +  +        + +     +   +G+SI     ++   + 
Sbjct: 693 LLTLRDQLISKANKDPILASVRANTLQQMPQLQVDIDNDKAAALGLSISDVNATLSAAWG 752

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE------------ 614
                    +G ++   +       S      +    G                      
Sbjct: 753 GTYINDFIDRGRVKKVYMQGDVDTRSKPEDLNQWFVRGSSDAMTSFSAFATTRWIYGPET 812

Query: 615 -KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              +  +  Y+     A          ++ ++       +    G      L     + +
Sbjct: 813 LSRYNGQTSYEIQGQAASGSSSGTAMDQMEKLAAELPGTSYAWSGLSYQERLASGQALSL 872

Query: 674 -IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             IS + + + +   ++ W      +  + L I   +    L G+E ++    A+LT +G
Sbjct: 873 YAISILVVFLCLAALYESWSVPFSVMMVIPLGIIGAVAAATLRGLENDIYFQVALLTTLG 932

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +  + +++ +   +    Y           +     L   + TS+A    V+P+A+  G
Sbjct: 933 LASKNAILIVE-FAE--AAYLRGEPLVAAALQGAATRLRPILMTSLAFIAGVMPLAMSTG 989

Query: 792 S 792
           +
Sbjct: 990 A 990


>gi|316934007|ref|YP_004108989.1| protein-export membrane protein SecF [Rhodopseudomonas palustris
           DX-1]
 gi|315601721|gb|ADU44256.1| protein-export membrane protein SecF [Rhodopseudomonas palustris
           DX-1]
          Length = 381

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 118/336 (35%), Positives = 194/336 (57%), Gaps = 17/336 (5%)

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
                 ++    A+ +V   +  +     ++ +            D     F + R    
Sbjct: 1   MTSTQWILIGLGAVVVVLTFVSIMNWLPSLRIVP-----------DETHFDFTQFRRISF 49

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRSNLESLQIGDISFQ 609
            IS + SI +I L FTHG+N+GIDFKGG  L V       D++ +R+ L  L +GD+  Q
Sbjct: 50  PISAVLSILAITLFFTHGVNFGIDFKGGTLLEVRDKSGTADIAGMRATLGKLGLGDVQLQ 109

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
            F G    L+RL  QPG   AQ   ++ V+  +         +  E+VGP++S EL+  G
Sbjct: 110 QFGGPSEVLIRLAEQPGGDQAQQDAVQKVRAAL---GESVEYRRVEVVGPRVSSELLAFG 166

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           ++G+I++ + +LIY+W RF+W FALGA+   + DI  T+GF ++  ++F+LT++AA+LT+
Sbjct: 167 MLGLILAILGILIYLWFRFEWQFALGAMIANVHDIVLTIGFMSISQVDFDLTSIAALLTI 226

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +GYS+ND VV+YDR+R+ ++ Y   +    L+++SIN TL RS+ T +   +++L + V+
Sbjct: 227 LGYSLNDTVVIYDRIREMLRRY-KKMPMPQLLNESINSTLSRSIITHVTVTLALLALLVF 285

Query: 790 GGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824
           GG+ I SF   M FG ++V   +SIFIAAPIL+++ 
Sbjct: 286 GGNAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 321


>gi|303326406|ref|ZP_07356849.1| RND efflux system, inner membrane transporter CmeB [Desulfovibrio
           sp. 3_1_syn3]
 gi|302864322|gb|EFL87253.1| RND efflux system, inner membrane transporter CmeB [Desulfovibrio
           sp. 3_1_syn3]
          Length = 1067

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/692 (9%), Positives = 181/692 (26%), Gaps = 47/692 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R      ++  +I  +G L      +    + ++P  +P               + + V
Sbjct: 11  LRRPVLSAVISILITLVGALA-----MKALPIAQYPDLVPPT-------------VNVSV 52

Query: 61  DEDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMR----QIQNKITLSFADSRFKENIADK 114
                    +       L   +   E +   +           I + F+     +     
Sbjct: 53  SYPGASAETIAATVLAPLEVNINGVENMLYMTSTAASGSGSGSINVYFSLGTNPDMALVN 112

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           V   +    + L  + ++  +         +              +     +    +D++
Sbjct: 113 VNNKVNLAQTLLPEEVRRQGVTVVKRSPAMLQAFAYYSPDGRYDEVYIHNWMQINVVDEL 172

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +   +     P +L +   T  +++      N+       G     
Sbjct: 173 KRVPGVGDCSVFGSMSYSMRIWLQPDKLAKYGLTVGEVARAIQDQNSQYAPGRLGDMPSP 232

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            S    + ++ +  +                 +    I      +          I    
Sbjct: 233 SSTQLTWQIDTEGRL-------------VTPEQFGEIIVRTGEDSAMLRLKDVARIELGG 279

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                G      V            +   T +        +           V       
Sbjct: 280 QDYSVGSRYNGMVARMGAVYLLPGANAIATGDLVLARLEEIAKTLPDGMAYKVVVDTNDF 339

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            + S      T      LV IV+++ +   +  L+   ++ +++I T A +  LG ++  
Sbjct: 340 VMESIKEVISTLVEAMILVFIVVYVFLQNWRATLIPCIAVPVSIIGTFAGMYALGYSINT 399

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +             +     +   + +    +     
Sbjct: 400 LTLFGMVLAIGIVVDDAIVVLENVERIMSSEHLPPKEATAKAMNEVTAPVIAIVLVLCAV 459

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDI 525
            + + F G   G   + FAIT+ +S+++S   A+++  ++   +       YK  ++   
Sbjct: 460 FIPVSFMGGLAGQMYKQFAITISVSVVLSGIVALTLTPSLCALLLKPHAHDYKPPRAFTW 519

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
              +   +    +             + +   +    +     +  G+         +  
Sbjct: 520 FNYAFGRVTHRYLRAVRFIKDSGLRAMILFGVMLVAIVWLLKVVPGGLVPNEDQGYILGM 579

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
               D +       ++      F   D   + +  +      S+A           +   
Sbjct: 580 AILADGASQHRT-TAVTDTLTDFVLKDPSVDGIATINGLDITSMAVKSNYGTFFATLKPW 638

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                   +     K    +       V++  
Sbjct: 639 DQRKGPGMSADDLTKKVMAVTMMQPEAVVLGF 670



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 79/200 (39%), Gaps = 6/200 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   ++    ++I + +P        +       E I++ I  ++ + I + I +++  +
Sbjct: 308 ATGDLVLARLEEIAKTLPDGMAYKVVVDTNDFVMESIKEVISTLVEAMILVFIVVYVFLQ 367

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + I  T       G   N   +  ++  IG  V+D +VV + +    
Sbjct: 368 NWRATLIPCIAVPVSIIGTFAGMYALGYSINTLTLFGMVLAIGIVVDDAIVVLENV--ER 425

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            + +  +  ++   K++NE     +   +      +P++  G   G +   FAI ++  +
Sbjct: 426 IMSSEHLPPKEATAKAMNEVTAPVIAIVLVLCAVFIPVSFMGGLAGQMYKQFAITISVSV 485

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++   ++ +   +   +  
Sbjct: 486 VLSGIVALTLTPSLCALLLK 505



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 65/150 (43%), Gaps = 8/150 (5%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +  +++ + + + +  +++ W   L  +T +   +   L    +  +  ++    A++TL
Sbjct: 887  IIFVLALVMVFLILAAQYESWSLPLAVLTAVPFGVFGALVATWMRDLSNDVYFQVALVTL 946

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + +++ +   ++ +      S      ++        V TS+A  +  +P+A+ 
Sbjct: 947  VGLAAKNAILIVEFAVESWRD---GRSLDVAAMQAARLRFRPIVMTSLAFILGCVPLAIS 1003

Query: 790  ---GGSVIGSFAIPMAFGIVVAA-SSSIFI 815
               G +   +    +  G++ A   +++F+
Sbjct: 1004 SGAGANSRHAIGTAVIGGMLAATCIATLFV 1033


>gi|187930809|ref|YP_001901296.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Ralstonia
           pickettii 12J]
 gi|309780195|ref|ZP_07674946.1| inner membrane multidrug efflux protein BpeB [Ralstonia sp.
           5_7_47FAA]
 gi|187727699|gb|ACD28864.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ralstonia pickettii 12J]
 gi|308920898|gb|EFP66544.1| inner membrane multidrug efflux protein BpeB [Ralstonia sp.
           5_7_47FAA]
          Length = 1050

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/631 (10%), Positives = 169/631 (26%), Gaps = 52/631 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G +        Q  + ++P+  P               +++    
Sbjct: 8   RPVFAWVLALFIILAGAISI-----TQLPISQYPTIAPP-------------SIIITATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN----KITLSFADSRFKENIADKVT 116
                  L +  +  +   +   +G+              +IT++F            V 
Sbjct: 50  PGANAKTLDESVTSIIEQEMNGADGLLYMESVSQGGNGQAQITVTFKAGTDPALAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V ++L     +  +     +   ++ +           +     I R  +++I  
Sbjct: 110 NRLKRVEARLPSQVTQQGVQVDKARSNFLLFATLASTDGKMDPVALGDYISRNVLNEIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q +        +    DP++L     T   +       N        G       
Sbjct: 170 VPGVGQAILFGT-ERAMRVWIDPAKLVGYKLTPTDVYNAIRAQNALVSAGTIGDLPSVSD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  + +++                +    +   +             +      
Sbjct: 229 QPLAATVVVEGQLTTTE-------------QFGNIVLVAKPDGSLVRVKDVARLELGGQT 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +    I+          +   T +        L           V         
Sbjct: 276 YSTSARINGQPISAIGVQLSPTGNALGTAKAVKAKLEELSKYFPAGVEYKVPYDTSKFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   ++ LV    + ++++   A ++ +G ++ + +
Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLLFLQNIRYTLVPSIVVPISLLGAFATMNAMGFSINVLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +      +      +    I    +  +   +
Sbjct: 396 MFGLVLAIGILVDDAIVVVENVERIMAEEGLPPREATRKAMGQITGAIIGITLVLMAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            + FF G      R F+++M  SI  S   A+++  A+   +           +      
Sbjct: 456 PMAFFSGSVGAIYRQFSLSMVSSIFFSALMALTLTPALCSTLLKPIEKGSHHEKKGFFGW 515

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +    +        +     +   + V    L        L         + +G I   
Sbjct: 516 FNRMFSTTTNRYQSFVERMLKKTFRYMVIYVALIVAVVFLFLRLPSSFLPTEDQGYIVTN 575

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +        +     ++ ++      +  + 
Sbjct: 576 IQLPPGASANRTLEVIKQVENYYKQEKAVEN 606



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 5/143 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + L     + + +          G   N+  +  ++  IG  V+D +VV + +     
Sbjct: 363 IRYTLVPSIVVPISLLGAFATMNAMGFSINVLTMFGLVLAIGILVDDAIVVVENV--ERI 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  R+   K++ +  G  +  ++      +PMA + GSV      F++ M   I 
Sbjct: 421 MAEEGLPPREATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVSSIF 480

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
            +A  ++ +   +   +     K
Sbjct: 481 FSALMALTLTPALCSTLLKPIEK 503



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 66/179 (36%), Gaps = 8/179 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G  +  +        +  +S +A+ + +   ++ W   
Sbjct: 837  DAMAEMERLAAKLPAGIGYEWTGQSLQEKASGSQAPALYALSLLAVFLVLAALYESWSIP 896

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               I  + L +   L    L  +  ++     ++ ++G S  + +++ +  +    L   
Sbjct: 897  AAVILVVPLGVLGALLGVTLRAMPDDVYFKVGLIAVVGLSAKNAILIIEFAKD---LQAQ 953

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA 809
              S  D   ++++      + TS A  + VLP+A+  G+      +    +  G++ A 
Sbjct: 954  GKSLIDATLEAVHLRFRPIIMTSFAFILGVLPLAIATGASSASQRAIGTGVMGGMITAT 1012


>gi|317152704|ref|YP_004120752.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316942955|gb|ADU62006.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 1063

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/512 (12%), Positives = 146/512 (28%), Gaps = 40/512 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           + ++P   P               + +    
Sbjct: 9   RPIFASVVAIVILMVGTLSIF-----ALPIAQYPEISPP-------------SVRVSASY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++   +  +   +   + +   S     +    +T++F   R  E     V  
Sbjct: 51  TGADAQTVEESVATPIEEQVNGAQDMMYMSSISANDGSLSLTVTFELGRDLELATVDVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + +   +    +    +++     DQ    ++  +        D I   
Sbjct: 111 RVNLALQQLPQEVRNTGVQVKKQSPEFVLIISLTSDQPQYDSLFLNNYAKINLYDAIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    +P +L     T   +       N        G+       
Sbjct: 171 DGVGDVNLFGDQDYGMRIWLNPDKLTSYGLTVTDVINAVNEQNVQAPAGQLGMPPAPKGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QFQMTLRVRGRLTDAE-------------EFGNIILKANPDGSTVKVHDVARVELGAKSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        +       +    ++      A L           V          
Sbjct: 278 YTFARLNGQPTASLLVYQLPGANALDVVKDIKKTMAELETYLPEGIKYSVPYDTTRFVNS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++    + +++I T AL  LL  ++   ++
Sbjct: 338 SIEEVMTTLFEALVLVFLVVFIFLQNWRTTIIPMVCVPVSLIGTFALFPLLDFSINTLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E  +   + +  S   +     +     I  S +  +   + 
Sbjct: 398 FGLVLAIGIVVDDAIVVVEATQRIIDEEGLSPKEATKKAMTEVTGPIIASTLVLVAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAIS 505
           + F G   G   + FA+T+ +S++IS   A++
Sbjct: 458 VAFMGGITGQLYKQFALTLSVSVVISSINALT 489



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 47/429 (10%), Positives = 125/429 (29%), Gaps = 19/429 (4%)

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              G    +  A  S       + ++  +  +   S D    RA           ++    
Sbjct: 609  TLGGFSMLTGAYSSYSTAVFVMLDDWSERTTPELSFDAIMGRAQQEFRTIQEAIVLGFQP 668

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G  +  G    +      S+    ++  A M    +  ++ ++  +  S+      
Sbjct: 669  PSIPGLSSTGGLQFELQDRTGGSIADLSAVATAYMEAAGKRPEVANLFTSFSSQVPQYLV 728

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLN-----YGIDFKGGIQLGVLANR---- 587
             I    ++     +          +   + +  N     Y +  +   Q           
Sbjct: 729  EIDRDKVKKLGVPLNEVFQTLQTYLGGYYINDFNKYGRTYRVMAQAESQYRTRLEDLNKF 788

Query: 588  -PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                 +     L +L   D +      ++  + R       +       + +        
Sbjct: 789  YMRSAAGQMVPLNTLSTADRTMGPEYIQRYNIFRTVEINAATPPGYSSGQTISAMEEVAA 848

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILD 703
                            +E    G  G+I     +++++ +      W      I  + L 
Sbjct: 849  SSLPEGYGFDWTAIAYQEKHSGGQTGLIFGLAIVMVFLVLAAQYESWATPFAVILCVPLG 908

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I   +    + G++ N+ A   ++ LIG +  + +++ +  ++    +   +S  +    
Sbjct: 909  IFGAMASQWIRGLDDNVYAQIGLVMLIGLAAKNAILIVEFAKE---KHEKGMSLTEAALS 965

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            + +      + TS A  + V+P+      G S   +    +  G++ A    + +   + 
Sbjct: 966  AAHLRFRPILMTSFAFILGVIPLVTASGAGSSSRHALGTSVFGGMIAATCLGVLVVPALY 1025

Query: 821  LFIYDWRAK 829
             F+     K
Sbjct: 1026 TFVQGIALK 1034



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 87/234 (37%), Gaps = 15/234 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +      +        L+  Q    +++   + ++    ++   +
Sbjct: 260 STVKVHDVARVELGAKSYYTFARLNGQPTASLLVYQLPGANALDVVKDIKKTMAELETYL 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +      +     I + +  +  + + + + ++I  + W   +  +  + + + 
Sbjct: 320 PEGIKYSVPYDTTRFVNSSIEEVMTTLFEALVLVFLVVFIFLQNWRTTIIPMVCVPVSLI 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLID 762
            T   F L     N   +  ++  IG  V+D +VV +   R+          +S ++   
Sbjct: 380 GTFALFPLLDFSINTLTLFGLVLAIGIVVDDAIVVVEATQRIIDE-----EGLSPKEATK 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
           K++ E  G  + +++      +P+A  G   G +   FA+ ++  +V+   SSI
Sbjct: 435 KAMTEVTGPIIASTLVLVAVFIPVAFMGGITGQLYKQFALTLSVSVVI---SSI 485


>gi|269977304|ref|ZP_06184277.1| protein-export membrane protein SecF [Mobiluncus mulieris 28-1]
 gi|269934607|gb|EEZ91168.1| protein-export membrane protein SecF [Mobiluncus mulieris 28-1]
          Length = 370

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 133/311 (42%), Gaps = 12/311 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     + Q ++ R   +   ++  + +I  +   G+N  IDFKGG    V  
Sbjct: 4   YAEWGNALYSGKKSYQIIKNRRIFLTTGLVLVLIAIIGIAIFGVNPSIDFKGGTDFTVTN 63

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +         +         + + F    N L     Q           E+ K      
Sbjct: 64  TQNNPPQQPAYDALKAAGITENPKVFQMGTNGLRVQTSQLATEKETQIQSELAKAYK--- 120

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
                  +   VGP     + R+  +G+++    + + +   F+ W  A+ A+  L+ D+
Sbjct: 121 -VNVKNVSKGSVGPSWGASVSRQAAIGLVVFLAMVSLLLMAYFRTWTMAVSALFALMHDL 179

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLID 762
             T+G FA   +E     +  +LT++GYS+ D VVV+D++R+N K     +  ++ +L +
Sbjct: 180 MITIGAFAFTQVEVTPATIIGLLTILGYSLYDTVVVFDKIRENTKDMMNQSRSTYDELAN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            SIN+T+ RS+ TS+ A + V  +        G S +   ++P+  G++V   SSIFIA 
Sbjct: 240 LSINQTMVRSINTSITAILPVSAILFLGSVLLGASTLRDISMPLFIGMIVGTFSSIFIAT 299

Query: 818 PILLFIYDWRA 828
           P+L  I +   
Sbjct: 300 PLLTIIRNHSQ 310


>gi|315186571|gb|EFU20330.1| protein-export membrane protein SecF [Spirochaeta thermophila DSM
           6578]
          Length = 355

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 153/298 (51%), Gaps = 6/298 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFT---HGLNYGIDFKGGIQLGVLANRPVDLSV 593
              I+F R R   + +S+L  +      F      L          ++ V  +    +  
Sbjct: 1   MRVIRFTRYRALAITLSLLVIVAGGVATFFQGGFNLGIDFRAGLTERVAVAPSVSASIED 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP--LSTI 651
           VR  L  +Q   +       ++ FLV+++ + G    +      +   +           
Sbjct: 61  VRRALAGIQGVQVQTIGAPEDQEFLVKVKEEEGAENFRETTRTAILSALGAAFGQGNVEE 120

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           ++++ +GP+ S  +  +  + V+++ + ML+YIW RF+  +A+GAIT L  D+   LG  
Sbjct: 121 RSSQYIGPRFSASIASQSFLLVLVAILFMLVYIWFRFQLAYAVGAITALFHDVFVLLGVI 180

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             F +E +   +AA+LT++GYS+ND +VV+DR+R+N +L      FR+++D SI +TL R
Sbjct: 181 GAFQLEVSTATIAAILTIVGYSINDTIVVFDRIRENTQLL-KERPFREIVDGSITQTLSR 239

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++ TS+   ++VL + ++    I  FA  +  GIVV   SSIFIA+P++++I + R +
Sbjct: 240 TLITSLTTLLAVLAIYIFTTGDIKLFAFNLIVGIVVGTYSSIFIASPVMMWIRNARHR 297


>gi|302038264|ref|YP_003798586.1| multidrug efflux transporter [Candidatus Nitrospira defluvii]
 gi|300606328|emb|CBK42661.1| Multidrug efflux transporter [Candidatus Nitrospira defluvii]
          Length = 1065

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/550 (12%), Positives = 156/550 (28%), Gaps = 36/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P   I            +     
Sbjct: 10  RPIFAAVLSIVIFAAGLIAI-----PILPISEYPEVVPPAVI---------VRAIYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVSTPLEEQINGV--ENMMYMKSVAGSDGVLQMTITFRPGTDPDAAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               S+L  +     + T  +    +V+ Q    +    A+        +  D++     
Sbjct: 114 SQALSRLPSEVVSLGVTTQKQSPTFLVMVQLLSPEGKYDALYLRNYANIKIKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P ++     T   +       N        G   +      
Sbjct: 174 VGQVQIFGSGDYAMRIWLNPDKIASRGLTAGDVVAAVREQNIQVSAGQLGAEPIAKDTDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    +     G           I         
Sbjct: 234 LISINAQGRL-------------RTAQEFGNVVLKIGAGGEVVRLSDVARIELGANDYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +        L+    P      +         S 
Sbjct: 281 RGQLDNQDAPPIGIFQAPGANALTVRDAVIAKMEELKTRFPPGLTYRSDYDTTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T A L L G ++   ++ G
Sbjct: 341 QAVVQTLMEAILLVVLVVILFLQTWRASIIPLIAVPVSVVGTFAALYLFGFSINTLTLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     + ++   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGRTPLQAAHQAMQEVSGPIVAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIP 535
                G   + FA+T+ +S +IS   ++++  A+    +  +   K      + R F   
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAKLLKGHGTPKDALSRLIERLFGWV 520

Query: 536 DCIAIQFMRA 545
                +F +A
Sbjct: 521 FRPFNRFFKA 530



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 52/145 (35%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N      ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMCMLCALAGVKLTGGDNNTFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+ +    G  V  +  I +  G+
Sbjct: 958  -LELQGKEIVEAALEACRLRLRPIVMTSVAFIAGTVPLVLSHGAGAEVRSATGITVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +F+     + +     + 
Sbjct: 1017 IGVTLFGLFLTPVFYVGLRMLSGRK 1041


>gi|94497228|ref|ZP_01303800.1| RND superfamily protein [Sphingomonas sp. SKA58]
 gi|94423333|gb|EAT08362.1| RND superfamily protein [Sphingomonas sp. SKA58]
          Length = 1032

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/659 (11%), Positives = 180/659 (27%), Gaps = 41/659 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  ++C +G++           +  +P   P                +    
Sbjct: 9   RRPVFAAVVAVLLCIVGVV-----GYLSLSVREYPDTDPPIV---------SVETIYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + ++       +    Q+ I + F  SR  ++ A+ V   +  
Sbjct: 55  AASVVETRITQLIEDAVAGVQGIQTITSTSEDGQSDINIEFDPSRDIDSAANDVRDRVGS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D     +        SI+    +       +I+ S  + R  +D+    +   
Sbjct: 115 VVEDLPEDALAPEIRKVDSDARSILFLSVSRPGW--SSIQISDYVDRNIVDRFSAIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +               +  +L     T A +       N       F  +          
Sbjct: 173 RVFIGGEARPSTRIWFNAEKLAAFGLTPADVENALRTQNVELPAGRFESKQ--------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                      +             +    +        +        I +         
Sbjct: 224 ----------QNQTLRVERPFATPQQFADLVIGRGADGYQVKLGDVARIEEGPENPYSSF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     + A  L   L           +          +   
Sbjct: 274 RSNGGTAIGLGIIRQSGANTLEVAQKAKALIKELE--LPAGMSIAIGTDESLFIERAIEN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A LV++V+F+ +   +  LV   ++ + ++ T A++ LLG ++ L ++   V
Sbjct: 332 VYDTLLEAALLVIMVIFLFLGSVRATLVPAVTVPICLLATCAVMWLLGLSINLLTLLAFV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     +      +  +G  +    I  + +      V + F  
Sbjct: 392 LAIGLVVDDAIVVLENVYHRVEQGDDPLVAAYLGSRQVGFAIISTTLVVCAVFVPIMFLA 451

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-C 537
           G      R  AI M  +I  S F ++S+   +   +++  +   +     +RF  I    
Sbjct: 452 GQTGLLFRELAIAMIAAIGFSGFISLSLAPMLCSKLLKTAERGRLARWVDNRFQRIESGY 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                   R   + +  +     +   F   L   +       +   +    + +     
Sbjct: 512 ARWLDHVLRKPLLPVLAVVIFLGVAGFFFTRLPTELAPAEDTGVVESSISAPEGTGYDQM 571

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           L  +   +        +      +   PG                       +I   E+
Sbjct: 572 LAYMLKIEKDLNFLREDGTLQNLVVRAPGGFGTTDDFNSGNVIAFLRPWEDRSITTAEV 630



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 69/241 (28%), Gaps = 8/241 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R              N        +  Q          +   ++K+          I
Sbjct: 258 DVARIEEGPENPYSSFRSNGGTAIGLGIIRQSGANTLEVAQKAKALIKELELPAGMSIAI 317

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              E +  + + E +   +  +  + + +++           L    T+ + +  T    
Sbjct: 318 GTDESLFIERAIENVYDTL--LEAALLVIMVIFLFLGSVRATLVPAVTVPICLLATCAVM 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G+  NL  + A +  IG  V+D +VV + +                      +    
Sbjct: 376 WLLGLSINLLTLLAFVLAIGLVVDDAIVVLENV---YHRVEQGDDPLVAAYLGSRQVGFA 432

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + T++      +P+    G         AI M   I  +   S+ +A  +   +     
Sbjct: 433 IISTTLVVCAVFVPIMFLAGQTGLLFRELAIAMIAAIGFSGFISLSLAPMLCSKLLKTAE 492

Query: 829 K 829
           +
Sbjct: 493 R 493



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 65/158 (41%), Gaps = 11/158 (6%)

Query: 667  RKGIVGVIISA--IAMLIYIWIRFKWYFALGAITTLILDITKTLGFF--ALFGIEFNLTA 722
              G + ++     + + + +  +F+ +   G I   +  +    G    AL G   NL +
Sbjct: 847  TGGAIWLVFGLTIVVVFLLLAAQFESFIHPGVIIATV-PLAVAGGVLGLALTGGSVNLYS 905

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ L+G +  + +++ +      +L    +     I ++    L   + TS+A  I 
Sbjct: 906  QIGIVMLVGLAAKNGILIVEFAN---QLRDEGLEIGRAIREAAKRRLRPILMTSIATVIG 962

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             LP+ +    G +   S  + + FG+ +A   ++F+  
Sbjct: 963  ALPLVIRGGAGAAARQSIGVVVVFGVSLATLITLFLIP 1000


>gi|303257120|ref|ZP_07343134.1| RND efflux system, inner membrane transporter CmeB [Burkholderiales
           bacterium 1_1_47]
 gi|331000925|ref|ZP_08324562.1| multidrug efflux pump BpeF [Parasutterella excrementihominis YIT
           11859]
 gi|302860611|gb|EFL83688.1| RND efflux system, inner membrane transporter CmeB [Burkholderiales
           bacterium 1_1_47]
 gi|329569884|gb|EGG51641.1| multidrug efflux pump BpeF [Parasutterella excrementihominis YIT
           11859]
          Length = 1167

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/671 (12%), Positives = 189/671 (28%), Gaps = 42/671 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  +I   GL+        Q  ++++P+  P               +++   
Sbjct: 8   KRPIFAIVVSLVIVISGLISMF-----QLPIEQYPNMAP-------------VQIMVTAS 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEGIGV----FSMRQIQNKITLSFADSRFKENIADKVT 116
                   + +  +  + + +      +     S       +T+ F      +    +V 
Sbjct: 50  YPGADAKTVAETVAAPIETQVNGVDNMIYMTSSSSSTGTMMLTVFFDIGTDPDIAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  +N L         ++L               +       +D I  
Sbjct: 110 NRVNIAQPYLPSEVIQNGLQIEKRSSSILMLIGIYGKGDRYSRDYINNYANVYVVDAIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   Q          +    +P R+  L  TT+ ++      N        G       
Sbjct: 170 VKGAGQSAVMGNANQAMRIWLNPDRMASLGITTSDINSAVANQNKRFAAGNIGAAPALPG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               + V             A +          + I  ++  +         ++      
Sbjct: 230 TIQTFPV------------IAPSPSVDPKGYEDIIIRSNQDQSAIVRLKDVASVDLGSQS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +     +      +A  +     +        L+A         V         
Sbjct: 278 YDVSSNMNGLPTSYIAVYQQAGANALDVAKNVRKTLEQLKANFPEGLDYKVAIDTTEFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V+++ +   K   +A  +I + +  T   +  LG T+ L +
Sbjct: 338 ISIDEVIKTLFEAVLLVIGVIYIFLQSFKSTAIACTAIVVALTGTFVGMLALGFTINLLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +   +   +  +  S     I  + +      V
Sbjct: 398 LFGLVLAIGLVVDDAIVVVENVERNMSEKAMNPIDATILAMSEVSGPIIATVLVLASVFV 457

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLS 529
              F G   G   + FAIT+ +S+ IS F A+++  A+    + +++ K+          
Sbjct: 458 PAAFMGGTTGMLYKQFAITIAISVSISGFVALTLTPALCAAWLSHEEPKTHGFFFRFNQL 517

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L            R   + I +   +          L  G          + A    
Sbjct: 518 FGRLTVKYGEWTRALFRRTLLVIILFAGMGVAIFQMFRVLPTGFVPSEDQGYVLAAIMLP 577

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             + ++ + E++   + +     G +       +   D   +T                 
Sbjct: 578 SSASLQRSTEAMDAIEKALDPVKGIETKNSIGGFSLLDGGVKTNAGTFFMTLAPFDERYK 637

Query: 650 TIQNTEIVGPK 660
             Q  + +   
Sbjct: 638 NSQTAKEMSAD 648



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 106/326 (32%), Gaps = 16/326 (4%)

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
               +    +  L       +       +    G   +      +I        +  +D 
Sbjct: 186 MRIWLNPDRMASLGITTSDINSAVANQNKRFAAGNIGAAPALPGTIQTFPVIAPSPSVDP 245

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT--- 632
           KG   + + +N+     V   ++ S+ +G  S+                   + A     
Sbjct: 246 KGYEDIIIRSNQDQSAIVRLKDVASVDLGSQSYDVSSNMNGLPTSYIAVYQQAGANALDV 305

Query: 633 -----RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                + LE +K    E +      +T         E+I+     V++    + I++   
Sbjct: 306 AKNVRKTLEQLKANFPEGLDYKVAIDTTEFVRISIDEVIKTLFEAVLLVIGVIYIFLQ-- 363

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +     A T +++ +T T       G   NL  +  ++  IG  V+D +VV + +   
Sbjct: 364 -SFKSTAIACTAIVVALTGTFVGMLALGFTINLLTLFGLVLAIGLVVDDAIVVVENV--E 420

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   +++  D    +++E  G  + T +      +P A  GG+       FAI +A  
Sbjct: 421 RNMSEKAMNPIDATILAMSEVSGPIIATVLVLASVFVPAAFMGGTTGMLYKQFAITIAIS 480

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830
           + ++   ++ +   +           
Sbjct: 481 VSISGFVALTLTPALCAAWLSHEEPK 506



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 55/147 (37%), Gaps = 9/147 (6%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      I  +   +   L      G+E ++     +L +IG +  + +++ +   +  
Sbjct: 898  SWALPGSVILAVPFGVIGALLATWARGLENDVYFQIGMLVMIGLAAKNAILIVEFAVE-- 955

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L    +        +        + TS+A     +P+AV    G +   S    +  G+
Sbjct: 956  -LRHKGMDLVRAAIDAGELRFRPIIMTSLAFIGGTIPLAVATGAGAASRHSLGTGIVGGM 1014

Query: 806  V-VAASSSIFIAAPILLFIYDWRAKNA 831
            + V+  + +F+  PI    ++  A+ +
Sbjct: 1015 IGVSTLALLFV--PIFYVWFEGWAERS 1039


>gi|289663000|ref|ZP_06484581.1| RND superfamily protein MexF [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1058

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/547 (11%), Positives = 156/547 (28%), Gaps = 35/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +P   +  +P  +P +              V     
Sbjct: 10  RPIFAAVLSIIIFAAGLIA-----MPLLPISEYPEVVPPSVQ---------VRAVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVVTVTFKPGTDPDQAQLQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +   +++  S     +  D++     
Sbjct: 114 SQAQARLPEDVRRQGVTTQKQSPTLTMVVHLTSPKGKYNSLYLSNYATLKVKDELSRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P ++     T + +       N        G   + +    
Sbjct: 174 VGQIQIFGAGDYAMRIWLNPDKVAARGLTASDVVAAIREQNVQVSAGQLGAEPMPNKSDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  ++                +    +                 +         
Sbjct: 234 LLSINAQGRLTTEE-------------EFGNIVIRSGNSGEIVRLSDVARLELGAGNYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +      A L+                     S 
Sbjct: 281 RSQLDNQNAVGMGVFQSPGANAIELSDAVRAKMAELQKQFPQDMAWSAAYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   S+ G
Sbjct: 341 SAVVHTLLEAVLLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++         + L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAMLLKSHDAPKDGPSRLIDRLFGWL 520

Query: 537 CIAIQFM 543
                  
Sbjct: 521 FRPFNRF 527



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTLLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+      G  V     I +  G+
Sbjct: 958  -LEMHGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVFGHGAGAEVRSVTGITVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      +F+     + +  W  +  
Sbjct: 1017 LGVTLFGLFLTPVFYVALRKWVTRRG 1042



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 56/143 (39%), Gaps = 14/143 (9%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 425 E---GLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASS----SIFIAAPILLFIYD 825
           ++       S+ ++  +   +  
Sbjct: 478 ISTVISAINSLTLSPALAAMLLK 500


>gi|268680504|ref|YP_003304935.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618535|gb|ACZ12900.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 1041

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/687 (10%), Positives = 189/687 (27%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+   L        ++++P   P               + ++   
Sbjct: 9   RPIFAWVISIVIMLTGVGSIL-----TLPVEQYPDIAPP-------------SIRIDTTY 50

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   L            S      +I ++F      +    +V  
Sbjct: 51  TGASAQTVENSVVQIIEQQLTGLDGLLYFSSSSSSAGTARIDVTFEKGTDADTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  + ++L    +   +  T  +   +++           +++ +  ++    D I   
Sbjct: 111 KVAQITTRLPKAVQDEGVRVTKAQSDFLMIFALYDKSNTRTSVDVADYLLSTMQDPIARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP +L       + +S      N        G        
Sbjct: 171 EGVGTVQVFGAQ-YAMRIWLDPYKLASYGLMPSDISSAISNQNVQVSAGSIGALPSASDQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K +                  +    I   +             +       
Sbjct: 230 QLNATVTAKSQ-------------YQTPEQFENIIVKSDSNGAIVRLRDVARVELGSESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   L                +   T +      A ++              +      
Sbjct: 277 KNVTRLNGYPAAGLAVMLAPSANALSTADRVKSTIAKMKPNMPEGYEVAYPRDSTQFIRI 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + ++ T  +L + G ++   ++
Sbjct: 337 SIEEVVKTLFEAILLVVVVMFVFLQNWRATLIPAIAVPVVLLGTFGVLEIFGYSINTLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475
            GIVL IGL VD  I+V E +      +  S   + +       S  I  + + + +   
Sbjct: 397 FGIVLSIGLLVDDAIVVVENVERIMREEKCSAMEATEKSMKEITSALIGIATVLSAVFLP 456

Query: 476 VLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + FF G      R F+IT+  S+++S+  A+++  A+   +                +  
Sbjct: 457 MAFFSGSTGVIYRQFSITIVSSMVLSVIVALTLTPALCASLLKPHEAVPHKGFFGWFNRM 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +        +     +   W +   ++ +  +  +L         + +G I + +   
Sbjct: 517 FDTSIERYKMSVGGVIAKPIRWMMVYGVITAAMAFLILRLPSGFLPDEDQGNIMVQMNLP 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                    +  + ++   +  ++ + E  F +      G           +        
Sbjct: 577 EGASFKRTDAVAKEIERYFLGQESNNTEAIFTISGFNFSGSGQNAGMAFVALSDWDERKG 636

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
             +          +   ++    +  +
Sbjct: 637 IANRSDMIASRATQNFSKIRDAQVYSL 663



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T G   +FG   N   +  ++  IG  V+D +VV + +     
Sbjct: 363 WRATLIPAIAVPVVLLGTFGVLEIFGYSINTLTMFGIVLSIGLLVDDAIVVVENV--ERI 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +     S  +  +KS+ E     +  +       LPMA + GS       F+I +   +V
Sbjct: 421 MREEKCSAMEATEKSMKEITSALIGIATVLSAVFLPMAFFSGSTGVIYRQFSITIVSSMV 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++ +   +   +  
Sbjct: 481 LSVIVALTLTPALCASLLK 499



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 82/252 (32%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V     V              G  S   ++G  ++ ++     G S           ++ 
Sbjct: 787  VQNKDNVMTPFSAFATTYWSYGAQSLTRYNGLASYEIQGAAAHGISSGVAMDRMEELQEA 846

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
              +                S + ++   + +++  + +     +   W      +  + L
Sbjct: 847  LPLGTSFAWSGLSYQERLSSGQTMKLYALSILVVFLCLA---ALYESWSVPFSVLLVIPL 903

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I  ++    +  +  ++    A+LT IG S  + +++ +     M  YT      +   
Sbjct: 904  GIFGSVLAAYVRELNNDVYFQVALLTTIGLSSKNAILIVE--FAEMA-YTQGKGLVEAAI 960

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     L   + TS+A    VLP+A+    G +   S    +  G + A   +IF+    
Sbjct: 961  EGAKLRLRPILMTSLAFIAGVLPLALSSGAGANSRISIGTGIIGGTLSATFLAIFLVPLF 1020

Query: 820  LLFIYDWRAKNA 831
             + +     K +
Sbjct: 1021 FVLVRGLFPKRS 1032


>gi|158604984|gb|EAT97760.3| protein-export membrane protein SecD [Campylobacter concisus 13826]
          Length = 526

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 170/550 (30%), Positives = 286/550 (52%), Gaps = 43/550 (7%)

Query: 1   MRNNP--WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MRN    + +I+  +    G   ++P+F                +ISLGLDL+GG H++L
Sbjct: 1   MRNARVTYRLIILILALVFGFGFSVPSFFQTQSGA---------KISLGLDLQGGLHMLL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF---KENIADKV 115
            V+ ++ ++  ++  +  +  + KKE + +   +  ++ +  +  DS      +    ++
Sbjct: 52  GVETNEAIHSKIKSIAGSINYYAKKEDVLIDKFKIKEDSVDFALLDSDEAPKVDKALAEI 111

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                             L +        I L++      I +AI Q++E IR R+DQ G
Sbjct: 112 KG----------------LDIKKDGLNYHITLTEQERIDTIEYAISQAVETIRNRLDQFG 155

Query: 176 ISESTIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           ++E T+ R G   IL++LPG +   D  R R L+   A +    V      +        
Sbjct: 156 LAEPTVARQGKDNILVELPGIKTEEDEQRARDLIAKAAHLQLMAVDDKRQDQANTMSEAE 215

Query: 233 LRD----------SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
                        +D  +Y+V++   + G  L  A   F  + + P+++ + +  GAR F
Sbjct: 216 AESYGDVIFKDAKNDRVKYVVKNIPVLDGSMLTDAKVAFSQQNNLPIINFTLNSEGARIF 275

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
            + T  N+GK LA+VLDG+V +APVIN+ I  G  QISG FT++ A  +A  LR+G+L  
Sbjct: 276 GDFTGANVGKRLAIVLDGKVYSAPVINERIGGGSGQISGGFTLDEAHDVAIALRSGALLA 335

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
            + ++E+R+VG  LG +SI +   A+ AG +L+VLFM+V YG  G+ A+ ++  +V++ +
Sbjct: 336 PVKMLEKRSVGPSLGQESINQSMVALAAGSILVVLFMLVYYGISGIFANIALVADVVILV 395

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
           A+++L GATLTLP +AGIVL IG+AVD+N+++NERIRE  R+  ++  ++  G+  A S 
Sbjct: 396 AVMALFGATLTLPGMAGIVLTIGMAVDANVIINERIRELLREGVAIRTAVQKGYEHAMSA 455

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           I DSN+T +I   VL+ +G G V+GFA+TM + I+ SM TAI     M   ++   +   
Sbjct: 456 IIDSNLTTIITVAVLYAYGTGPVKGFAVTMAIGIMASMLTAILGTHGMFDAVMDKIEKSG 515

Query: 523 IDINPLSRFF 532
                     
Sbjct: 516 NTRLWFGYKR 525



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + +E I + +V +   +I +++++ + +     + A   L+ D+   +   ALFG
Sbjct: 344 SVGPSLGQESINQSMVALAAGSILVVLFMLVYYGIS-GIFANIALVADVVILVAVMALFG 402

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++ +R+R+ ++     ++ R  + K     +   + +
Sbjct: 403 ATLTLPGMAGIVLTIGMAVDANVIINERIRELLRE---GVAIRTAVQKGYEHAMSAIIDS 459

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
           ++   I+V  +  +G   +  FA+ MA GI+ +  ++I
Sbjct: 460 NLTTIITVAVLYAYGTGPVKGFAVTMAIGIMASMLTAI 497


>gi|186681529|ref|YP_001864725.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Nostoc
           punctiforme PCC 73102]
 gi|186463981|gb|ACC79782.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Nostoc
           punctiforme PCC 73102]
          Length = 1105

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/694 (11%), Positives = 180/694 (25%), Gaps = 44/694 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G +       P   + + P   P               + +  +
Sbjct: 8   KRPVLTTVCTFIILLLGSICI-----PILPISQLPDLAP-------------VQITVSSN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +    + +   +     +   S     +    IT+SF  +   +     V 
Sbjct: 50  NIGADAQTTENTVTNIIERQINGVKDVSYISSNTGNDGSSNITVSFPTNVNSDIAQVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                 + +L    ++  +   T     +++     +      I  S  +    +DQI  
Sbjct: 110 NKEALASPQLPDTVQRTGVTVETASSSLLLVYGFYSENNEYDNIFISNYVDLYILDQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP++L Q   T   ++      N        G     D+
Sbjct: 170 LPGVGSARVFGERKYAMRLWLDPNKLAQHQLTPQDVTTALQQQNIQVGAGAIGKEPAPDN 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              ++ +                     +       S     +          +      
Sbjct: 230 QSFEFALRATSRF--KDAAEFEDMVLKVSQGGTNSTSNSATNSTLVKVRDVGRVELGAEN 287

Query: 297 VLDGRVLTAP-----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
            L     T P                  +              L     P     +    
Sbjct: 288 YLADAKFTIPGNAPKAAVGLGIYQLPGSNALDVAHAVEERIVALEKSFPPGLKAQLAFDT 347

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      LV++V+F+ +   +  ++   +I +++I T A L +LG  
Sbjct: 348 TPFVEISLEEVLHTLVEAIILVVLVIFVFLQDWRTTIIPTVAIPVSLIGTCAALLVLGFQ 407

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           +   ++ G VL IG+ VD  I+V E +  +  +    F +           I  +++  +
Sbjct: 408 INTLTLFGFVLAIGIVVDDAIIVVEAVAVKLEQGMRPFEAAVEAMKELTGAIIATSLVLM 467

Query: 472 IATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KK 519
              + + F  G      + FA+T+  SI IS F A++   +M   ++R            
Sbjct: 468 AVFIPVAFIPGTTGIVYKQFALTVACSIAISTFNALTFSPSMAAILMRPAQTARGPLGWF 527

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
               +             ++                     +            + +G  
Sbjct: 528 FTQFNRGFSWFTRRYVGFVSYLTHVKPIVVGVFITGLVATVLMYRAVPTGFIPEEDQGYF 587

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V     V L    S ++ +     S         F++      G++         +K
Sbjct: 588 FVIVQGPDGVSLKYTESVMDRVVKEVTSAPEVRAS--FMISGFGFDGNASNLGIAFANLK 645

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                     ++        K    +     + V
Sbjct: 646 PWKERAKESQSVYGILQRLNKKLSAITEARAIAV 679



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 73/199 (36%), Gaps = 9/199 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A    +  ++K     +      +T         E++   +  +I+  + + +++     
Sbjct: 323 AVEERIVALEKSFPPGLKAQLAFDTTPFVEISLEEVLHTLVEAIILVVLVIFVFLQ---D 379

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +     + + +  T     + G + N   +   +  IG  V+D ++V + +     
Sbjct: 380 WRTTIIPTVAIPVSLIGTCAALLVLGFQINTLTLFGFVLAIGIVVDDAIIVVEAV---AV 436

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +   +   +++ E  G  + TS+      +P+A   G+       FA+ +A  I 
Sbjct: 437 KLEQGMRPFEAAVEAMKELTGAIIATSLVLMAVFIPVAFIPGTTGIVYKQFALTVACSIA 496

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++  +++  +  +   +  
Sbjct: 497 ISTFNALTFSPSMAAILMR 515



 Score = 45.8 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 76/748 (10%), Positives = 176/748 (23%), Gaps = 68/748 (9%)

Query: 101  SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
                S   +     V   +  +        K  L   TT      +              
Sbjct: 311  QLPGSNALDVAHA-VEERIVALEKSFPPGLKAQLAFDTTPFVEISL-------------- 355

Query: 161  EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
                E++   ++ I +    I           +P    P  L         + F      
Sbjct: 356  ---EEVLHTLVEAIILVVLVIFVFLQDWRTTIIPTVAIPVSLIGTCAALLVLGFQI--NT 410

Query: 221  NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
             +  GF+  +  + D               G+    A      +    ++  S   M   
Sbjct: 411  LTLFGFVLAIGIVVDDAIIVVEAVAVKLEQGMRPFEAAVEAMKELTGAIIATSLVLMAVF 470

Query: 281  RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
                      G            +  +      +    ++             +    + 
Sbjct: 471  IPVAFIPGTTGIVYKQFALTVACSIAISTFNALTFSPSMAAILMRPAQTARGPLGWFFTQ 530

Query: 341  PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
              +      R     +   +  K     V    L+   ++      G + +       ++
Sbjct: 531  FNRGFSWFTRRYVGFVSYLTHVKPIVVGVFITGLVATVLMYRAVPTGFIPEEDQGYFFVI 590

Query: 401  TLA------------LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE---NRKN 445
                           +  ++    + P +    +  G   D N              ++ 
Sbjct: 591  VQGPDGVSLKYTESVMDRVVKEVTSAPEVRASFMISGFGFDGNASNLGIAFANLKPWKER 650

Query: 446  QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
                 S+     R    +        IA       G  +  GF   +      +    + 
Sbjct: 651  AKESQSVYGILQRLNKKLSAITEARAIAVNAPPVRGLSSTGGFEFIIQDRTGSAPIETLV 710

Query: 506  IV-RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
               +  +    +   ++ +     +        +     +A    +          +   
Sbjct: 711  ETAKKFIAAANKKPVLQRVFTQFTADTPQFDIQVNRNQAKALNVEINDIFGALQTYLGSQ 770

Query: 565  FTHGLNYGIDFKGGIQLGVLANRPVDLSVV-----------RSNLESLQIGDISFQNFDG 613
            + +    G        +        +   +              L SL            
Sbjct: 771  YVNNFVQGQRQYRVY-VQADGVFRSNPDDIGKLYVRSANGAMIPLSSLVKVTPFVGPKTI 829

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                L R     G         E +K        +              +E    G  G+
Sbjct: 830  SHYNLYRSIKVQGAPAPGASSGEAIKAMEQVAAEMLPQGFGYEWTGTYLQEKTSGGATGL 889

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV---------- 723
            I +   +++++ +  ++   +  I  L+      LG      +  N+             
Sbjct: 890  IFALAIVIVFLVLAAQYESYVDPIIILLTVPLAVLGAMTAIWLRSNIFMAGSLFPKVVDD 949

Query: 724  ----AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
                  ++TLIG +  + ++V +      +L+   +S+     K+  E L   + TS AA
Sbjct: 950  IYCQVGLVTLIGLAAKNAILVVEFAN---QLHEQGMSYTRAAVKAGQERLRPILMTSFAA 1006

Query: 780  FISVLPMAVW---GGSVIGSFAIPMAFG 804
             +  LP+ +    G S   S    +  G
Sbjct: 1007 LLGFLPLVISQGAGASSRWSLGTALFGG 1034


>gi|289751210|ref|ZP_06510588.1| LOW QUALITY PROTEIN: preprotein translocation complex subunit secF
           [Mycobacterium tuberculosis T92]
 gi|289691797|gb|EFD59226.1| LOW QUALITY PROTEIN: preprotein translocation complex subunit secF
           [Mycobacterium tuberculosis T92]
          Length = 443

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 133/296 (44%), Gaps = 11/296 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    G+S      +I  +   G  +GIDFKGG  +           V      +L  
Sbjct: 62  GRRRLWFGVSGAIVAVAIASIVFRGFTFGIDFKGGTTVSFPRGSTQVAQVEDVYYRALGS 121

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659
              S        +  V+++ +   S    ++ + + +          P     +   V  
Sbjct: 122 EPQSVVIVGAGASATVQIRSETLTSDQTAKLRDALFEAFGPKGTDGQPSKQAISDSAVSE 181

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++ +K ++ +++  + + +YI +R++ Y  + AIT ++ D+T T G ++L G E  
Sbjct: 182 TWGGQITKKAVIALVVFLVLVALYITVRYERYMTISAITAMLFDLTVTAGVYSLVGFEVT 241

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D V+V+D++ +N     +TT  +F +  + +IN+T  RS+ TS+
Sbjct: 242 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTFMRSINTSL 301

Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + VL +      + G   +   A+    GI++   SSIF A P+L+ + +   
Sbjct: 302 IGVLPVLALMVVAVWLLGVGTLKDLALVQLIGIIIGTYSSIFFATPLLVTLRERTE 357


>gi|266624200|ref|ZP_06117135.1| protein-export membrane protein SecF [Clostridium hathewayi DSM
           13479]
 gi|288863962|gb|EFC96260.1| protein-export membrane protein SecF [Clostridium hathewayi DSM
           13479]
          Length = 337

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 157/342 (45%), Gaps = 19/342 (5%)

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +   R +++ IIR  K   +    + +   I        M+ ++    ISI   +     
Sbjct: 1   VWFSRTVLLSIIREGKFHDLKWYKVKKNQKIYP-----IMKRKYIWFAISICMLLAGAVG 55

Query: 564 LFTHGLNYGIDFKGGIQ--LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK---NFL 618
              +G++    F GG      +     V+   V + +      +++ +    +     F+
Sbjct: 56  FVKNGVSLDTQFTGGTTLKYEIEGAADVNSDAVAAKISGETGRNVNVRLTKEDGLGKQFM 115

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V           +++          +    + +     V P + ++ +   ++ ++++A+
Sbjct: 116 VLTFAGQEGISPESQEYVTQILNSYQDGFTAALSEAYAVQPYMGQKTLHNAVIAMVLAAV 175

Query: 679 AMLIYIWIRFKWY----FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +Y+WIRF         + A+  LI D+   L  F +F I  N   VA VLT+IGYS+
Sbjct: 176 LITVYVWIRFSILSGLSAGVSAVIALIHDVLIVLCAFLVFAIPLNDAFVAVVLTIIGYSI 235

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV----WG 790
           ND +V+YDR+R+NM L+    S  +L+D S++++LGRS++TS+   ISVL + +    +G
Sbjct: 236 NDTIVIYDRIRENMNLH-KCSSIDELVDTSVSQSLGRSLHTSLTTCISVLILVIASWHFG 294

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              I  F++P+ FG+V    SSI +A+ +     + R   ++
Sbjct: 295 IQSIFEFSLPLLFGLVSGCFSSICVASVLWAMWKNSRRAESK 336


>gi|294994304|ref|ZP_06799995.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           210]
          Length = 441

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/295 (22%), Positives = 134/295 (45%), Gaps = 10/295 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    G+S      +I  +   G  +GIDFKGG  +           V      +L  
Sbjct: 62  GRRRLWFGVSGAIVAVAIASIVFRGFTFGIDFKGGTTVSFPRGSTQVAQVEDVYYRALGS 121

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT---EIVPLSTIQNTEIVGPK 660
              S        +  V+++ +   S    ++ + + +      +  P     +   V   
Sbjct: 122 EPQSVVIVGAGASATVQIRSETLTSDQTAKLRDALFEAGPKGTDGQPSKQAISDSAVSET 181

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
              ++ +K ++ +++  + + +YI +R++ Y  + AIT ++ D+T T G ++L G E   
Sbjct: 182 WGGQITKKAVIALVVFLVLVALYITVRYERYMTISAITAMLFDLTVTAGVYSLVGFEVTP 241

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSMA 778
             V  +LT++G+S+ D V+V+D++ +N     +TT  +F +  + +IN+T  RS+ TS+ 
Sbjct: 242 ATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTFMRSINTSLI 301

Query: 779 AFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + VL +      + G   +   A+    GI++   SSIF A P+L+ + +   
Sbjct: 302 GVLPVLALMVVAVWLLGVGTLKDLALVQLIGIIIGTYSSIFFATPLLVTLRERTE 356


>gi|170025933|ref|YP_001722438.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Yersinia
           pseudotuberculosis YPIII]
 gi|169752467|gb|ACA69985.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           pseudotuberculosis YPIII]
          Length = 1041

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/684 (10%), Positives = 192/684 (28%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++      L    + ++P   P +                    
Sbjct: 9   RPVFAWVIAIVIMLGGVVA-----LETLPIAQYPDVAPPSI---------SIKATYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + L        S     N KI  +F      +    +V   +Q 
Sbjct: 55  AETLENSVTQVIEQELTGLDGLLYFSSSSGSDGNAKIVATFKQGTNADTAQVQVQNKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + +   +  T  +   +++     ++      + +  ++    D +   E   
Sbjct: 115 ALTRLPTEVQAQGVTVTKSQTNFLLIMSLYDEKDKHTGTDIADYLVSNLQDPLARLEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P++L       + +       N        G            
Sbjct: 175 SVQVFGSQ-YAMRIWLNPTKLAAYNLMPSDVQSAITAQNTQVSAGKIGALPSGKEQQLTA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +             +           
Sbjct: 234 TVMAQSRL-------------KTPEQFNNIIVKSDSTGAVVRLRDVARVELGNEDYSVTT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T E     AA               + +      S   
Sbjct: 281 RLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELNLPDGYKIAYPKDSTDFIKVSVEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ + ++ T  +L++ G ++   ++ G+V
Sbjct: 341 VVKTLIEAILLVVIVMYIFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    R++      + +   S   S +    +      + + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERVMREDNLPPREATEKSMSEIASALIGIALVLSAVFLPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------IDINPLS 529
           GG      R F+IT+  ++ +S+  A+++  A+    ++               +     
Sbjct: 461 GGATGVIYRQFSITIVSAMALSVLVALTLTPALCATFLKPNHKPPSEHGFFGGFNRRYDR 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R+  + +  ++L  +  +  +         + +G + +        
Sbjct: 521 MQTRYESLVGHVIHRSLRYLLIYAVLIGVMCVLFIRLPTGFLPTEDQGDVMVQYTLPAGA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                    ++++   ++ +  + +  F +      G           +K         +
Sbjct: 581 TSGRTMEVSKAVENYFMTQEKDNTKAVFTISGFGFSGSGQNAGMAFIALKHWRDRPGSEN 640

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
           T         K    +    I  +
Sbjct: 641 TATAIADRAMKALSSIRDAQIFSM 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 99/287 (34%), Gaps = 6/287 (2%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            G   S      +  ++    L     F   I         V L  V       +   ++
Sbjct: 220 IGALPSGKEQQLTATVMAQSRLKTPEQFNNIIVKSDSTGAVVRLRDVARVELGNEDYSVT 279

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +        +  +     +++A    ++    +    +P               +  + 
Sbjct: 280 TRLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELNLPDGYKIAYPKDSTDFIKVSVE 339

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           + +  +I + + ++I ++I  +     L     + + +  T G  A+FG   N   +  +
Sbjct: 340 EVVKTLIEAILLVVIVMYIFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGM 399

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  IG  V+D +VV + +     +   ++  R+  +KS++E     +  ++      LPM
Sbjct: 400 VLSIGLLVDDAIVVVENV--ERVMREDNLPPREATEKSMSEIASALIGIALVLSAVFLPM 457

Query: 787 AVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A +GG+       F+I +   + ++   ++ +   +         K 
Sbjct: 458 AFFGGATGVIYRQFSITIVSAMALSVLVALTLTPALCATFLKPNHKP 504



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 62/175 (35%), Gaps = 5/175 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAI 678
           +  Y+     A          ++ ++       +    G      L     + +  IS +
Sbjct: 819 QTSYEIQGQAASGSSSGTAMDQMEKLAAELPGTSYAWSGLSYQERLASGQALSLYAISIL 878

Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + + +   ++ W      +  + L I   +    L G+E ++    A+LT +G +  + 
Sbjct: 879 VVFLCLAALYESWSVPFSVMMVIPLGIIGAVAAATLRGLENDIYFQVALLTTLGLASKNA 938

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +++ +   +    Y           +     L   + TS+A    V+P+A+  G+
Sbjct: 939 ILIVE-FAE--AAYLRGEPLVVAALQGAATRLRPILMTSLAFIAGVMPLAMSTGA 990


>gi|330818162|ref|YP_004361867.1| Transporter, hydrophobe/amphiphile efflux-1 family protein
           [Burkholderia gladioli BSR3]
 gi|327370555|gb|AEA61911.1| Transporter, hydrophobe/amphiphile efflux-1 family protein
           [Burkholderia gladioli BSR3]
          Length = 1063

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 154/574 (26%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIILMLAGIASIF-----TLPIAQYPTIAPP-------------SIQISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S     + ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVVEQQMSGLDNFLYMSSTSDDSGTSTITLTFAAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++     +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLKVTKSSSSFLLVLAFVSEDGSMNKYDLANYVASHVEDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPNKLTNYSLTPVDVTSAITSQNVQIAGGQIGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + ++  +                 +    +        +        +       
Sbjct: 229 VLQATITEQTLL-------------QTPEEFGNILLKVNQDGSQVRLKDVAKLSLGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L                      
Sbjct: 276 NFDTKYNGQPTAGLGIQLATNANALQTANAVRAKIDELSKYFPHGLTVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S +G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSAVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMSEEGLSPKEATKKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F R+R             S   L  +
Sbjct: 511 FFGWFNRTFNRSRDNYHKGVHHVIKRSGRWLIIY 544



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++     +     ++++  
Sbjct: 258 SQVRLKDVAKLSLGGENYNFDTKYNGQPTAGLGIQLATNANALQTANAVRAKIDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLTVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMSAVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPKEATKKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 492



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 79/220 (35%), Gaps = 8/220 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         +   +    +         +   +    
Sbjct: 816  ERYNGISAVEIQGQAAPGKSTGQAMTAMQALAQKLPVGIGYSWTGLSYQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+        +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQVGEKMGPVEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G +   +    +  G++ A   +IF+     + +  
Sbjct: 991  SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFVKVRG 1030



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 61/516 (11%), Positives = 139/516 (26%), Gaps = 32/516 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              D  +  L+   D + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LKDISDYVLKDEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYASRQHANQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA--IEQSMEIIRQRIDQIGISES 179
            +  +        ++         +  +     ++  +A     ++   R ++  +   + 
Sbjct: 650  MFGRYAGYKDAIVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGLAAKDP 709

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            T+Q +  + +      + D  R +        ++   +    S       V    D+DG 
Sbjct: 710  TLQGVRPNGLNDTPQYKVDIDREKANALG---VTASAIDQTFSIAWASQYVNNFLDTDGR 766

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                          +          T + +                              
Sbjct: 767  I-----------KKVYVMADAPFRATPEDLNIWYVRNGAGGMVPFSAFATGHWTYGSPKL 815

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             R      +     +   + +G        +   +             +E   G      
Sbjct: 816  ERYNGISAVEIQGQAAPGKSTGQAMTAMQALAQKLPVGIGYSWTGLSYQEIQSG------ 869

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            S      AI   +V + L  +             + L VI  L   +L G    +    G
Sbjct: 870  SQAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVG 929

Query: 420  IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            ++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  + L 
Sbjct: 930  LLTTVGLSAKNAILIVEFARELQVGEKMGPVEAALEAARLRLRPILMTSLAFILGVLPLA 989

Query: 479  FF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                 G  +       +   +L + F AI ++    
Sbjct: 990  ISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFF 1025


>gi|238791460|ref|ZP_04635098.1| Acriflavine resistance protein B [Yersinia intermedia ATCC 29909]
 gi|238729076|gb|EEQ20592.1| Acriflavine resistance protein B [Yersinia intermedia ATCC 29909]
          Length = 1023

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/663 (10%), Positives = 169/663 (25%), Gaps = 46/663 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKEG-- 85
           +  + ++P+  P               + +  +        +Q      +   +      
Sbjct: 2   KLPVAQYPTIAPPA-------------ITISANYPGADATTVQNTVTQVIEQNMNGIDNL 48

Query: 86  --IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
             +   S      ++TL+F      +    +V   LQ     L  + ++  +        
Sbjct: 49  LYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSS 108

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            ++++    +       + +  +     D I  +               +    DP +L 
Sbjct: 109 FLMVAGFISEDGTMQQEDIADYVGSNVKDPISRTLGVGDVQLFGSQ-YAMRIWMDPHKLN 167

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
               T   +     + NN       G             +  +  ++             
Sbjct: 168 NFKLTPVDVINAIKVQNNQVAAGQLGGTPPVPGQELNSSIIAQTRLTNAE---------- 217

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +    +        +        +                             +   
Sbjct: 218 ---EFSQILLKVNTDGSQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALD 274

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T        A L+         +           S +    T      LV +V+++ +  
Sbjct: 275 TSAAVKAELAKLQPFFPNGLKVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQN 334

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE-EN 442
            +  L+   ++ + ++ T A+LS  G ++   ++ G+VL IGL VD  I+V E +     
Sbjct: 335 FRATLIPTIAVPVVLLGTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENVERVMQ 394

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILIS 499
            +      +      +    +    +      + + FFG   G   R F+IT+  ++++S
Sbjct: 395 EEGLPPKEATKKSMEQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLS 454

Query: 500 MFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +  A+ +  A+   +                   +           D +A        + 
Sbjct: 455 VLVALILTPALCATMLKPITKGEHGPSTGFFGWFNRMFEKSTHHYTDSVANILRSTGRYL 514

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V   ++     +  L         + +G     V           +  L  +    +  +
Sbjct: 515 VIYLVIVIGMGVLFLRLPTSFLPEEDQGVFLTMVQMPAGATQERTQKVLNQVTDYYLDKE 574

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                  F V      G           +K         + +            ++    
Sbjct: 575 KDVVNSVFTVNGFGFSGQGQNTGLAFVSLKNWDERPGDQNKVPAIVGRASAAFSQIKDGL 634

Query: 670 IVG 672
           +  
Sbjct: 635 VFA 637



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +I  +        +        +++  +  ++    K+    
Sbjct: 231 SQVRLKDVAIVKLGAESYNIIARYNGKPAAGIGIKLATGANALDTSAAVKAELAKLQPFF 290

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + I + + +++  + +   L     + + + 
Sbjct: 291 PNGLKVVYPYDTTPFVKISINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 350

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 351 GTFAILSAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMQEEGLPPKEATKKSM 408

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 409 EQIQGALVGIAMVLSAVFIPMAFFGGATGAIYRQFSITIVSAMVLSVLVALILTPAL 465



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
             +  G      L       +  IS I + + +   ++ W      +  + L +   L  
Sbjct: 828 GYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA 887

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +L G+  ++     +LT IG S  + +++ +  +  M          +   +++   L 
Sbjct: 888 ASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKG--LVESTLEAVRMRLR 945

Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             + TS+A  + VLP+ +    G     +    +  G++ A   +I
Sbjct: 946 PILMTSLAFILGVLPLVISSGAGSGAQNAVGTGVMGGMITATVLAI 991


>gi|213966151|ref|ZP_03394338.1| preprotein translocase subunit SecF [Corynebacterium amycolatum
           SK46]
 gi|213951249|gb|EEB62644.1| preprotein translocase subunit SecF [Corynebacterium amycolatum
           SK46]
          Length = 405

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 129/314 (41%), Gaps = 11/314 (3%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L      I  +  R     I+    + +   +   G ++GIDF+GG ++ +      
Sbjct: 23  FRRLYTGEGGINIVGKRKRWYQIAAAIIVVAFAAMLIRGFSFGIDFEGGTKMTMPPASVT 82

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                    E+  +     Q     +  ++ +  +             +      +    
Sbjct: 83  TEQAEEVFTEATGVKPELVQIIGSGEGRILEITSEKLTQDEINSARVALNDAFKPVDVQG 142

Query: 650 TIQ----NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                      V       +  + ++  ++    + IYI I F+   A+ AI  L++D  
Sbjct: 143 QQTPDAIGDSTVSESWGSSITNRMLLAAVVFLGLVFIYITIHFERDMAISAILALVVDAI 202

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDK 763
             +G +AL G++     +  +LT++ +S+ D VVV+D++ +N   Y   T  S+ +L++ 
Sbjct: 203 VIMGIYALIGLDVTPATIIGLLTVLSFSLYDTVVVFDKVDENTAGYRSSTRRSYAELVNL 262

Query: 764 SINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           ++N+T+ RS+ T+++  + +L + V      G   +   A+    GI+    SSIF+A+ 
Sbjct: 263 AVNQTIMRSINTTVSTLLPILALMVIAVGMLGVGTLKDLALVQLIGIIQGTFSSIFLASS 322

Query: 819 ILLFIYDWRAKNAR 832
           +L+ +   + +  +
Sbjct: 323 LLVSLKSRQREYRK 336


>gi|325922882|ref|ZP_08184602.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas gardneri ATCC 19865]
 gi|325546636|gb|EGD17770.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas gardneri ATCC 19865]
          Length = 1057

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 155/547 (28%), Gaps = 35/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +P   +  +P  +P +              V     
Sbjct: 10  RPIFAAVLSIIIFAAGLIA-----MPLLPISEYPEVVPPSVQ---------VRAVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--EDMMYMKSVAGSDGVLVVTVTFKPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +   +++  S   + +  D++     
Sbjct: 114 SQAQARLPEDVRRQGVTTQKQSPTLTMVVHLTSPKGKYNSLYLSNYALLKVKDELSRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP ++     T + +       N        G   + +    
Sbjct: 174 VGQIQIFGAGDYAMRIWLDPDKVAARGLTASDVVAAIREQNVQVSAGQLGAEPMPNKSDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  ++                +    +                 +         
Sbjct: 234 LLSINAQGRLTTEE-------------EFGNIVIRSGNSGEIVRLSDVARLELGAGNYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +      A L                      S 
Sbjct: 281 RSQLDNQNAVGMGVFQSPGANAIELSDAVRAKMAELEKQFPQDMAWSAAYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   S+ G
Sbjct: 341 SAVVSTLLEAVLLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++           L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAMLLKAHDAPKDGPTRLIDRLFGWL 520

Query: 537 CIAIQFM 543
                  
Sbjct: 521 FRPFNRF 527



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTLLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+      G  V     I +  G+
Sbjct: 958  -LEMHGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVFGHGAGAEVRSVTGITVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDW 826
            +      +F+     + +  W
Sbjct: 1017 LGVTLFGLFLTPVFYVALRKW 1037



 Score = 47.4 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 56/143 (39%), Gaps = 14/143 (9%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 425 E---GLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASS----SIFIAAPILLFIYD 825
           ++       S+ ++  +   +  
Sbjct: 478 ISTVISAINSLTLSPALAAMLLK 500


>gi|16331321|ref|NP_442049.1| preprotein translocase subunit SecF [Synechocystis sp. PCC 6803]
 gi|6647856|sp|Q55611|SECF_SYNY3 RecName: Full=Protein-export membrane protein secF
 gi|1001494|dbj|BAA10119.1| protein-export membrane protein; SecF [Synechocystis sp. PCC 6803]
          Length = 315

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 78/304 (25%), Positives = 151/304 (49%), Gaps = 17/304 (5%)

Query: 542 FMRARFWGVGISILFSICSICLLFTH-----GLNYGIDFKGGIQLGVL-----ANRPVDL 591
           F   +   +  S+L  I    +  +          G+DF GG +L +      +N     
Sbjct: 6   FKWEKPAWIVSSLLVLISIFAMAISWAQFQAPFRPGLDFVGGTRLQLQLECASSNNCPAA 65

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             V    + L    +   +    +++ + ++ Q  D   +  V + + + I +  P    
Sbjct: 66  IDVAEVQDILGGVGLGNSSVQVIEDYTLSIRQQTLDVEQREAVQKALNEGIGKFDPE--T 123

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP + + L R G++ ++IS + ++IY+ IRF+  +A+ AI  L+ D   T+G F
Sbjct: 124 IQIDTVGPTVGKALFRSGVLALVISLLGIIIYLTIRFQLDYAVFAIIALLYDALITMGAF 183

Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A+FG+    E +   + A+LT+IG+SVND VV+YDR+R+ ++ + +      ++D ++N+
Sbjct: 184 AIFGLVGGVEVDSLFLVALLTIIGFSVNDTVVIYDRVRETLERH-SDWDINHVVDDAVNQ 242

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL RS+ TS+   + ++ + ++GG  +  FA+ +  G      SSIF+A  +  +   WR
Sbjct: 243 TLTRSINTSLTTSLPLVAIFLFGGDSLKFFALALIIGFASGVYSSIFMATTLWAWWRKWR 302

Query: 828 AKNA 831
           +   
Sbjct: 303 SPKN 306


>gi|117620595|ref|YP_855860.1| putative transporter AmrB [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117562002|gb|ABK38950.1| putative transporter AmrB [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 1042

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 70/572 (12%), Positives = 159/572 (27%), Gaps = 41/572 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++       P+  +  +PS  P               + L    
Sbjct: 8   RPVFAWVIALFIVLAGVIAI-----PKLPISHYPSVAP-------------VSVTLYATY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L      L       +K       S+    + +IT +F      E     V  
Sbjct: 50  SGATPQTLNDAVVSLIERELSGVKNLLYFESSVDASGSAQITATFKPGTDPELAQMDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V  +L    ++N L   +     +++            +  +  + R  + ++   
Sbjct: 110 RIKAVEPRLPQAVRQNGLQVESASSGFLMMVGMTSPDGRFEEVALNDYMARNIVQELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L     T ++++      N        G        
Sbjct: 170 DGVGRVQLFGA-EQAMRIWVDPGKLAAYGLTISEVAQAIEQQNVQIAPGRLGDEPALPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + +++                     +        +        +       
Sbjct: 229 RLTVPLTVEGQLT-------------TPEAFAAIVLRAGTDGAKLVLGDVARVELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                        A        +   T +      A L           +   +      
Sbjct: 276 AFANRENGVAATSAAIQLSPGANAVRTADAVRTRLAQLSPTLPAGMAYSIPFDSAPFVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+      + ++ T A++ L G ++   ++
Sbjct: 336 SIEKVIHTLLEAMVLVFLVMFLFLQNLRYTLIPAIVAPIALLGTFAVMLLAGFSINSLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERLMASRGLSPREATSQAMKEISGAVIGITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      + F ++M +SIL S F A+++  A+   ++R       +       F 
Sbjct: 456 MAFGGGSVGVIYQQFTLSMAVSILFSAFLALTLTPALCATLLRPISPDHHEKRGFFGAFN 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLF 565
                      AR   +       + +   L 
Sbjct: 516 RGVERLTAGYGARVTSLVGRSGRVMATFAALC 547



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 78/204 (38%), Gaps = 12/204 (5%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-W 685
            + A    L  +   +   +  S   ++         ++I   +  +++  + M +++  
Sbjct: 302 TADAVRTRLAQLSPTLPAGMAYSIPFDSAPFVKVSIEKVIHTLLEAMVLVFLVMFLFLQN 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +R+    A+ A   L      T     L G   N   +  ++  IG  V+D +VV + + 
Sbjct: 362 LRYTLIPAIVAPIAL----LGTFAVMLLAGFSINSLTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPM 801
               + +  +S R+   +++ E  G  +  ++    +V     +GG  +      F + M
Sbjct: 417 -ERLMASRGLSPREATSQAMKEISGAVIGITL-VLTAVFIPMAFGGGSVGVIYQQFTLSM 474

Query: 802 AFGIVVAASSSIFIAAPILLFIYD 825
           A  I+ +A  ++ +   +   +  
Sbjct: 475 AVSILFSAFLALTLTPALCATLLR 498



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 66/179 (36%), Gaps = 6/179 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +++   +P            +  +   +  ++ ++   +  L+   +   W   L  
Sbjct: 835  AEMERLVAQLPPGFAVAWTGQSLQERQSAAQAPLLMLLSGLVVFLVLAALYESWSIPLSV 894

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +  + L +   +    L G+  ++     ++T+IG S  + +++ +  R   +L+    S
Sbjct: 895  MLVVPLGLLGAVAAVMLRGMPNDVFFKVGMITIIGLSAKNAILIVEFAR---QLHGEGRS 951

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSS 812
              D    +    L   + TS+A  + V+P+ +  G       +    +  G++     +
Sbjct: 952  LLDAAVTAARLRLRPILMTSLAFTLGVVPLMLASGASAETQHAIGTGVFGGMISGTLLA 1010


>gi|182677893|ref|YP_001832039.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182633776|gb|ACB94550.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1062

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/555 (13%), Positives = 153/555 (27%), Gaps = 39/555 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I  IGL            +  +P  +P               + +    
Sbjct: 10  RPIFATVLSLFITIIGL-----GAYFTLPVAEYPEIVPPT-------------VQITATY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S +   +    IT++F      +        
Sbjct: 52  PGASADVVSRTVATPLEQQINGVENMLYMSSQATGDGKLVITITFKIGTNLDTAQVLTQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +         ++L            +  S        D +   
Sbjct: 112 RVSIALPRLPQEVQRLGVTVRKTTPDILILVHLFSPDGSRDQLYMSNYATLHVRDVLSRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP ++     T  ++       N      +     L  + 
Sbjct: 172 EGIGDVQVFGSRDYSMRIWLDPDKVAAYGLTAGEVVSALQAQNVQVSAGILNQPPLPSAA 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V+    ++             K  +    I   +   R         +       
Sbjct: 232 AFQLNVQTLGRLT-------------KPEEFAEIIIKSDEQGRLTRVKDVGRVEVGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T          L     P     V          
Sbjct: 279 GANGFLDGRNAVPIPVYQQPGSNALETANRVRATMDELARDFPPGLAYDVVYDPTRFIEQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   +I +++I T A+L+ LG +L   S+
Sbjct: 339 SVHEVLHTIIEAIALVVVVVILFLQTWRASIIPIVAIPISLIGTFAILAALGFSLNNLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL +G+ VD  I+V E +    +K  S   +  +       A   I  +     I +
Sbjct: 399 FGLVLAVGIVVDDAIVVVENVERNLQKGLSPREAAHLTMDEVGGALIAIALTLCAVFIPS 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   R FA+T+  S +IS   ++++  A+   ++R    +            +
Sbjct: 459 AFISGISGAFFRQFAVTIAASTIISCLVSLTLSPALCALLLRPHTQEHDHHAKGFGPARL 518

Query: 535 PDCIAIQFMRARFWG 549
                  F R   W 
Sbjct: 519 IQGFFNLFNRGFDWL 533



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               ++    S + + + +  +++ W   L  I  + + +   +    + G+  ++ A   
Sbjct: 881  TSTLLIFGASILFVFLVLAAQYESWKLPLSVILIVPMCLLAAVTGLMMRGMAIDILAQIG 940

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             + L+G +  + +++ +  +   +      + +D   ++    L   + TS+A  + VLP
Sbjct: 941  FVVLVGLAAKNAILIVEFAK---QAEDDGATTKDAAVQAARTRLRPILMTSLAFILGVLP 997

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + +    G  +  S    + FG++      + I  PI       
Sbjct: 998  LVMASGAGAEMRQSLGTAVFFGMLGVTFFGL-IFTPIFYVAARR 1040



 Score = 43.9 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 59/142 (41%), Gaps = 12/142 (8%)

Query: 690 WYFALGAITTLILDIT---KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           W  ++  I  + + +      L      G   N  ++  ++  +G  V+D +VV + + +
Sbjct: 365 WRASIIPIVAIPISLIGTFAILAA---LGFSLNNLSLFGLVLAVGIVVDDAIVVVENVER 421

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAF 803
           N++     +S R+    +++E  G  +  ++      +    + G  G+    FA+ +A 
Sbjct: 422 NLQ---KGLSPREAAHLTMDEVGGALIAIALTLCAVFIPSAFISGISGAFFRQFAVTIAA 478

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
             +++   S+ ++  +   +  
Sbjct: 479 STIISCLVSLTLSPALCALLLR 500


>gi|22124617|ref|NP_668040.1| multidrug efflux protein [Yersinia pestis KIM 10]
 gi|45440455|ref|NP_991994.1| multidrug efflux protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108808975|ref|YP_652891.1| multidrug efflux protein [Yersinia pestis Antiqua]
 gi|108810770|ref|YP_646537.1| multidrug efflux protein [Yersinia pestis Nepal516]
 gi|145600546|ref|YP_001164622.1| multidrug efflux protein [Yersinia pestis Pestoides F]
 gi|153997478|ref|ZP_02022578.1| multidrug efflux protein [Yersinia pestis CA88-4125]
 gi|162421173|ref|YP_001608300.1| RND efflux transporter [Yersinia pestis Angola]
 gi|165925862|ref|ZP_02221694.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165936753|ref|ZP_02225320.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166010028|ref|ZP_02230926.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166214302|ref|ZP_02240337.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167398627|ref|ZP_02304151.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167420764|ref|ZP_02312517.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167423682|ref|ZP_02315435.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167467381|ref|ZP_02332085.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Yersinia pestis FV-1]
 gi|218930496|ref|YP_002348371.1| multidrug efflux protein [Yersinia pestis CO92]
 gi|229839132|ref|ZP_04459291.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229896621|ref|ZP_04511788.1| multidrug efflux protein [Yersinia pestis Pestoides A]
 gi|229899696|ref|ZP_04514837.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900970|ref|ZP_04516094.1| multidrug efflux protein [Yersinia pestis Nepal516]
 gi|270489150|ref|ZP_06206224.1| putative ATP synthase F0, A subunit [Yersinia pestis KIM D27]
 gi|294505184|ref|YP_003569246.1| multidrug efflux protein [Yersinia pestis Z176003]
 gi|21957422|gb|AAM84291.1|AE013672_9 acridine efflux pump [Yersinia pestis KIM 10]
 gi|45435312|gb|AAS60871.1| multidrug efflux protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108774418|gb|ABG16937.1| multidrug efflux protein [Yersinia pestis Nepal516]
 gi|108780888|gb|ABG14946.1| multidrug efflux protein [Yersinia pestis Antiqua]
 gi|115349107|emb|CAL22070.1| multidrug efflux protein [Yersinia pestis CO92]
 gi|145212242|gb|ABP41649.1| multidrug efflux protein [Yersinia pestis Pestoides F]
 gi|149289115|gb|EDM39195.1| multidrug efflux protein [Yersinia pestis CA88-4125]
 gi|162353988|gb|ABX87936.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis Angola]
 gi|165915402|gb|EDR34012.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165922474|gb|EDR39651.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165990935|gb|EDR43236.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166204534|gb|EDR49014.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166961570|gb|EDR57591.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167051131|gb|EDR62539.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Antiqua str. UG05-0454]
 gi|167057852|gb|EDR67598.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229682309|gb|EEO78401.1| multidrug efflux protein [Yersinia pestis Nepal516]
 gi|229687188|gb|EEO79263.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229695498|gb|EEO85545.1| multidrug efflux protein [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229700399|gb|EEO88431.1| multidrug efflux protein [Yersinia pestis Pestoides A]
 gi|262363246|gb|ACY59967.1| multidrug efflux protein [Yersinia pestis D106004]
 gi|262367177|gb|ACY63734.1| multidrug efflux protein [Yersinia pestis D182038]
 gi|270337654|gb|EFA48431.1| putative ATP synthase F0, A subunit [Yersinia pestis KIM D27]
 gi|294355643|gb|ADE65984.1| multidrug efflux protein [Yersinia pestis Z176003]
 gi|320016687|gb|ADW00259.1| multidrug efflux protein [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 1041

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/684 (10%), Positives = 192/684 (28%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++      L    + ++P   P +                    
Sbjct: 9   RPVFAWVIAIVIMLGGVVA-----LETLPIAQYPDVAPPSI---------SIKATYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + L        S     N KI  +F      +    +V   +Q 
Sbjct: 55  AETLENSVTQVIEQELTGLDGLLYFSSSSGSDGNAKIVATFKQGTNADTAQVQVQNKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + +   +  T  +   +++     ++      + +  ++    D +   E   
Sbjct: 115 ALTRLPTEVQAQGVTVTKSQTNFLLIMSLYDEKDKHTGTDIADYLVSNLQDPLARLEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P++L       + +       N        G            
Sbjct: 175 SVQVFGSQ-YAMRIWLNPTKLAAYNLMPSDVQSAITAQNTQVSAGKIGALPSGKEQQLTA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +             +           
Sbjct: 234 TVMAQSRL-------------KTPEQFNNIIVKSDSTGAVVRLRDVARVELGNEDYSVTT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T E     AA               + +      S   
Sbjct: 281 RLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELNLPDGYKIAYPKDSTDFIKVSVEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ + ++ T  +L++ G ++   ++ G+V
Sbjct: 341 VVKTLIEAILLVVIVMYIFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    R++      + +   S   S +    +      + + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERVMREDNLPPREATEKSMSEIASALIGIALVLSAVFLPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------IDINPLS 529
           GG      R F+IT+  ++ +S+  A+++  A+    ++               +     
Sbjct: 461 GGATGVIYRQFSITIVSAMALSVLVALTLTPALCATFLKPNHKPPSEHGFFGGFNRRYDR 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R+  + +  ++L  +  +  +         + +G + +        
Sbjct: 521 MQTRYESLVGHVIHRSLRYLLIYAVLIGVMCVLFIRLPTGFLPTEDQGDVMVQYTLPAGA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                    ++++   ++ +  + +  F +      G           +K         +
Sbjct: 581 TSGRTMEVSKAVENYFMTQEKDNTKAVFTISGFGFSGSGQNAGMAFIALKHWRDRPGSEN 640

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
           T         K    +    I  +
Sbjct: 641 TATAIADRAMKALSSIRDAQIFSM 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 99/287 (34%), Gaps = 6/287 (2%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            G   S      +  ++    L     F   I         V L  V       +   ++
Sbjct: 220 IGALPSGKEQQLTATVMAQSRLKTPEQFNNIIVKSDSTGAVVRLRDVARVELGNEDYSVT 279

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +        +  +     +++A    ++    +    +P               +  + 
Sbjct: 280 TRLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELNLPDGYKIAYPKDSTDFIKVSVE 339

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           + +  +I + + ++I ++I  +     L     + + +  T G  A+FG   N   +  +
Sbjct: 340 EVVKTLIEAILLVVIVMYIFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGM 399

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  IG  V+D +VV + +     +   ++  R+  +KS++E     +  ++      LPM
Sbjct: 400 VLSIGLLVDDAIVVVENV--ERVMREDNLPPREATEKSMSEIASALIGIALVLSAVFLPM 457

Query: 787 AVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A +GG+       F+I +   + ++   ++ +   +         K 
Sbjct: 458 AFFGGATGVIYRQFSITIVSAMALSVLVALTLTPALCATFLKPNHKP 504



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/361 (11%), Positives = 109/361 (30%), Gaps = 25/361 (6%)

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           +   ++     +A S+I D+ I ++    V          G +      +  +  T+   
Sbjct: 640 NTATAIADRAMKALSSIRDAQIFSMTPPAV-------DGLGQSNGFTFELQATGDTSREQ 692

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           +  +   +I       I  +  +        + +     +   +G+SI     ++   + 
Sbjct: 693 LLTLRDQLISKANKDPILASVRANTLQQMPQLQVDIDNDKVAALGLSISDVNATLSAAWG 752

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE------------ 614
                    +G ++   +       S      +    G                      
Sbjct: 753 GTYINDFIDRGRVKKVYMQGDVDTRSKPEDLNQWFVRGSSDAMTSFSAFATTRWIYGPET 812

Query: 615 -KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              +  +  Y+     A          ++ ++       +    G      L     + +
Sbjct: 813 LSRYNGQTSYEIQGQAASGSSSGTAMDQMEKLAAELPGTSYAWSGLSYQERLASGQALSL 872

Query: 674 -IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             IS + + + +   ++ W      +  + L I   +    L G+E ++    A+LT +G
Sbjct: 873 YAISILVVFLCLAALYESWSVPFSVMMVIPLGIIGAVAAATLRGLENDIYFQVALLTTLG 932

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +  + +++ +   +    Y           +     L   + TS+A    V+P+A+  G
Sbjct: 933 LASKNAILIVE-FAE--AAYLRGEPLVVAALQGAATRLRPILMTSLAFIAGVMPLAMSTG 989

Query: 792 S 792
           +
Sbjct: 990 A 990


>gi|325852973|ref|ZP_08171186.1| RND transporter, HAE1 family [Prevotella denticola CRIS 18C-A]
 gi|327314159|ref|YP_004329596.1| RND transporter, HAE1 family [Prevotella denticola F0289]
 gi|325484515|gb|EGC87434.1| RND transporter, HAE1 family [Prevotella denticola CRIS 18C-A]
 gi|326945083|gb|AEA20968.1| RND transporter, HAE1 family [Prevotella denticola F0289]
          Length = 1064

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/616 (12%), Positives = 172/616 (27%), Gaps = 49/616 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  IG+L           + +FPS  P              ++V   D
Sbjct: 7   RRPVLSIVVALVIAFIGVLSLF-----NLPITQFPSISPPK-----------VNVV--AD 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N  L +     L   L    G+         +   +I + F         A  V 
Sbjct: 49  YPGANNELLIKSVIIPLEQALNGVPGMKYIESDAGNDGEAEINVVFKLGTDPNVDAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL  +  +  +  + E+   ++      D    +              ++  
Sbjct: 109 NRVSAATNKLPPEVIREGVKISREEPNILMYINLYSDDPSVNQEFLFNYFDINISPELLR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P ++     +T  +S      N        G       
Sbjct: 169 VDGVGDLDILGTRSYAMRVWLHPDKMVAYGLSTDDVSDALEDQNIEVSPGKLGESGGICP 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +++++     +                +    I       +        +I     V
Sbjct: 229 QVKEFVLKYPGRYT-------------TAEEYGNIIIKSNANGQAVRLKDIADIHLGSEV 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                + +  I+    +   L+                    
Sbjct: 276 YDIYSTLNGRPSAAVTLKQAYGSNASNVIKQVKQVMTRLQKDMPKGMHYEYSYDISRFLD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F+ +   +  ++   ++ ++++ +   + +   TL + S
Sbjct: 336 ASIDKVVHTLFEAFILVALVVFVFLGDWRSAVIPIMAVPVSLLGSFIAMLVFNITLNMIS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +V+ IG+ VD  I+V E +  E  +N+ +   + +         I   ++      +
Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVEISRNKLTPVEATEKAMKEISGAIIAISLVMASVFI 455

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---------I 523
            + F G   G   R F+ITM  SIL S F A+++  A+   I+  ++            +
Sbjct: 456 PVAFMGGPEGMFYRQFSITMASSILFSGFVALTLTPALCALILTKEQENHVKLGFIGRLL 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                           +     +     +  +   C +      GL  G   +    +  
Sbjct: 516 QRFNAQFNVGSKKYAHVLQHTVKHKAFTMIAVLVFCGLAYWVNLGLPSGFIPQEDQGMIY 575

Query: 584 LANRPVDLSVVRSNLE 599
                   S +    E
Sbjct: 576 AVIETPPGSTIERTNE 591



 Score = 93.6 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 101/252 (40%), Gaps = 7/252 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V L  +       ++ DI           +   Q    ++    + ++ V  ++ + +
Sbjct: 259 QAVRLKDIADIHLGSEVYDIYSTLNGRPSAAVTLKQAYGSNASNVIKQVKQVMTRLQKDM 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P            +     I K +  +  + I + + +++    W  A+  I  + + + 
Sbjct: 319 PKGMHYEYSYDISRFLDASIDKVVHTLFEAFILVALVVFVFLGDWRSAVIPIMAVPVSLL 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            +     +F I  N+ ++ A++  IG  V+D +VV + +  N+++    ++  +  +K++
Sbjct: 379 GSFIAMLVFNITLNMISLFALVMAIGIVVDDAIVVIEAV--NVEISRNKLTPVEATEKAM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI-LL 821
            E  G  +  S+      +P+A  GG        F+I MA  I+ +   ++ +   +  L
Sbjct: 437 KEISGAIIAISLVMASVFIPVAFMGGPEGMFYRQFSITMASSILFSGFVALTLTPALCAL 496

Query: 822 FIYDWRAKNARI 833
            +   +  + ++
Sbjct: 497 ILTKEQENHVKL 508



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 79/250 (31%), Gaps = 12/250 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A   V  S   S  ++  + +I+  N                   A   + E+ ++ + 
Sbjct: 793  DAGEMVPYSDFMSLNKTYGMSEITRHNLYNSSEVTGAPAPGYSSGQALKAISEVAQQSLP 852

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
            +                         I+  I+  + + + +  +++ +   L  I  L +
Sbjct: 853  K-GYDYDWAGISKDEVDQGN----TAIIIFIVCLVFVYLILAAQYENFLLPLPIIIFLPV 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        L G+E N+ A  A++ LIG    + V++ +    +++      S      
Sbjct: 908  GVFGAFLLLKLCGLENNIYAQIALVMLIGLLGKNAVLMVE---YSVQRKNMGQSIAQAAI 964

Query: 763  KSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPI 819
            +         + TS+A    ++P+    G   I   +       G+++     + I   +
Sbjct: 965  EGAVARFRPILMTSIAFIAGLIPLVFATGAGAIGNKTIGTAAVGGMMIGTMFGLVIIPGL 1024

Query: 820  LLFIYDWRAK 829
                     K
Sbjct: 1025 YYIFASMADK 1034


>gi|319943413|ref|ZP_08017695.1| multiple transferable resistance system protein MtrD [Lautropia
           mirabilis ATCC 51599]
 gi|319743228|gb|EFV95633.1| multiple transferable resistance system protein MtrD [Lautropia
           mirabilis ATCC 51599]
          Length = 1051

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/685 (11%), Positives = 182/685 (26%), Gaps = 48/685 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +  +G++        Q  + ++P+  P               + +    
Sbjct: 8   RPVFAWVVALFLMVLGVVSI-----TQLPVSQYPNVAPPT-------------IRISTTY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+      +   +    G+         +    ++L+F +   ++     V  
Sbjct: 50  PGASAQTLEDSVLSIIEREMNGSPGLMYMESVAQADGTGTLSLTFENGTNEDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L     +  +     +   +     + +      I       R  + +I   
Sbjct: 110 RLSRATPRLPSAVTQQGVQIEKARSNFLTFVMLSSNDPSLDTIGMGDYASRNILPEIQRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q          +    DP++L     ++A +       N        G        
Sbjct: 170 EGVGQARLFGA-ERAMRIWVDPAKLDSYKLSSADVVSAIQGQNIQVSAGATGALPNLHGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K ++S +              +    +                 I       
Sbjct: 229 PITANVNVKGQLSTVE-------------EFGNIVLRTTSSGAAVRLKDVARIELGGQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +          S     +   T          L+          V          
Sbjct: 276 ATTARINGKPATGIGVSLSNTGNALSTARAVHAKMKELQQFFPQGMEWQVPYDTSDFVDI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + + ++ T  +L  LG ++ + ++
Sbjct: 336 SIEQVVHTLGEAIVLVFLVMFLFLQNIRYTLIPTIVVPVALLATFGVLLSLGMSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +    I    +  +   + 
Sbjct: 396 FGMVLVIGIVVDDAIIVVENVERIMSEEGLPPRQATVKAMGQISGAIVGVTVVLISVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           L FFG   G   R F+  M  SI  S F A+S+  A+             + K       
Sbjct: 456 LAFFGGAVGNIYRQFSAVMATSIGFSAFLALSLTPALCASFLKPVEAGHHHAKSGFFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                       +      R     + +   I  +   F   +  G          V+  
Sbjct: 516 NRGFASTAKRYESSMARVIRRSAWWMLLYGVIIGVTAFFFMRIPSGFLPNEDQGYIVVNV 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    +     L++++  +         KN +  L +    +     +  +  K   E  
Sbjct: 576 QLPPGASQERTLDAMKQIEQFMMAQPEVKNTIGVLGFSFSGNGQNAAIAFVTLKDWNERQ 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIV 671
                        +++   IR   V
Sbjct: 636 GEEHSAAALAQRAQMALAGIRDAFV 660



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 88/242 (36%), Gaps = 6/242 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              +   V L  V       Q    + +        +       G++++  R +    K+
Sbjct: 253 TTSSGAAVRLKDVARIELGGQSYATTARINGKPATGIGVSLSNTGNALSTARAVHAKMKE 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           + +  P                  I + +  +  + + + + +++  +   + L     +
Sbjct: 313 LQQFFPQGMEWQVPYDTSDFVDISIEQVVHTLGEAIVLVFLVMFLFLQNIRYTLIPTIVV 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G     G+  N+  +  ++ +IG  V+D ++V + +     +    +  R  
Sbjct: 373 PVALLATFGVLLSLGMSINVLTMFGMVLVIGIVVDDAIIVVENV--ERIMSEEGLPPRQA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             K++ +  G  V  ++      +P+A +GG+V      F+  MA  I  +A  ++ +  
Sbjct: 431 TVKAMGQISGAIVGVTVVLISVFIPLAFFGGAVGNIYRQFSAVMATSIGFSAFLALSLTP 490

Query: 818 PI 819
            +
Sbjct: 491 AL 492



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 68/161 (42%), Gaps = 9/161 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              S +A+ + +   ++ W   L  +  + L +   +      G+E ++     ++T+IG 
Sbjct: 874  AFSLLAIFLCLAALYESWAIPLSVLLVVPLGVLGVVLAAQWGGLENDVYFKLGMITIIGL 933

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            S  + +++ +  ++         S      ++ +      + TS+A  + V+P+AV  G+
Sbjct: 934  SAKNAILIIEFAKE--LHELQGKSVAAAALQAAHLRFRPILMTSLAFTLGVVPLAVATGA 991

Query: 793  VI---GSFAIPMAFGIVVAASSSIFIAA---PILLFIYDWR 827
                  +  I +  G++ A   ++        I+++++  R
Sbjct: 992  SSTSQRAIGIGVVGGMISATVLALLFVPLFYVIVMWLFRRR 1032


>gi|296272174|ref|YP_003654805.1| hydrophobe/amphiphile efflux transporter [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096349|gb|ADG92299.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 1043

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 82/687 (11%), Positives = 190/687 (27%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +    ++ +P  +P               + ++   
Sbjct: 9   RPIFATVLSLVIIIAGLM-----GIRGLPIEEYPQVIPP-------------QVTVQATY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
           +      +       +   +   E +   S         +I + F      +  A  V  
Sbjct: 51  NGASAETISKTVAAPIEQQINGVEDMIYMSSTASSAGTLQINVYFKIGTDPDQAAVNVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   + L  + +   +    + E  I              I  +   +   +D++   
Sbjct: 111 RVQAALANLPSEVQTQGVTVRKKSESIIEFIALQSPNNSFDQIYMANYALVNILDELKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +     P +L +   T   +       N+      F     + + 
Sbjct: 171 EGVGDAALFGNYDYSMRIWMKPDQLSKYNLTPNDVISAISEQNSQFATGRFNQTPSKSTQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  +                 K  +    I                 +       
Sbjct: 231 AFTYTVTTQGR-------------FDKVKEFENIILKSNKDGSTLRIKDVARVELGAKSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L    +       ++  +   T +    +   L           V          
Sbjct: 278 DVTATLNGKPMVPIGIFLQSGANALGTAQRVDAVMKKLSKTFPKGLEYKVPYDTTKFIKI 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++++++ +   +  ++   +I +++I T A + +LG ++ L ++
Sbjct: 338 SVQEVVKTLLEALLLVVLIVYLFLQNIRATIIPVIAIPISIIGTFAGMYVLGYSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            G+VL IG+ VD  I+V E +      R++ SV  +           +    +      +
Sbjct: 398 FGLVLAIGIVVDDAIIVIENVERILHTRRDISVKDATIQAMKEVTGPVIAIVLVLCAVFI 457

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F G   G   + FA+T+ +S++IS   A+++  A+    +R  + K          F
Sbjct: 458 PVTFMGGFTGSMYQQFAVTIVISVVISGMVALTLTPALCAIFLRKHEPKPFWFMRKFNEF 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY------GIDFKGGIQLGVLAN 586
                       +     G+  +    ++  +              ++ KG +   V   
Sbjct: 518 FDRLTNMFTKGVSNVIRHGVISIIIFAALMGITYQLFQKVPSSLVPMEDKGYLISFVNLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               LS  R  +  +    +  +N                   +      ++K       
Sbjct: 578 PASTLSRTRDVMSEVDNIALKNKNLIDSVVISGYDFISGARKTSSATDFLILKDWDERKD 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
                     V      ++    I  V
Sbjct: 638 SAQHSMELSKVYNGAFSQIAAASIFTV 664



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 65/169 (38%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G    I   + + + +  ++ +W   L  +T++   +   +    + G+  ++     +
Sbjct: 870  SGTQAFIFGIVFIFLILAAQYERWLMPLAVVTSVPFAVFGAILAVYMRGLSNDIYFQIGL 929

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            L LIG S  + +++ +     M+   +  S  D   ++        V TS+A  I V+P+
Sbjct: 930  LVLIGLSAKNAILIIEFA---MQAQKSGKSVFDATLEAARLRFRPIVMTSLAFTIGVVPL 986

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +    G     +    +  G++ A   +IF       ++     K  +
Sbjct: 987  VISSGAGAGSRHAIGTGVLGGMIAATCIAIFFIPLFYNWLARLNTKFTK 1035



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 56/144 (38%), Gaps = 4/144 (2%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +  +  + + I  T     + G   NL  +  ++  IG  V+D ++V + + + + 
Sbjct: 364 IRATIIPVIAIPISIIGTFAGMYVLGYSINLLTLFGLVLAIGIVVDDAIIVIENV-ERIL 422

Query: 750 LYTTSISFRDLIDKSINETLG---RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
                IS +D   +++ E  G     V    A FI V  M  + GS+   FA+ +   +V
Sbjct: 423 HTRRDISVKDATIQAMKEVTGPVIAIVLVLCAVFIPVTFMGGFTGSMYQQFAVTIVISVV 482

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++   ++ +   +           
Sbjct: 483 ISGMVALTLTPALCAIFLRKHEPK 506


>gi|121604206|ref|YP_981535.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120593175|gb|ABM36614.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Polaromonas naphthalenivorans CJ2]
          Length = 1081

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/585 (11%), Positives = 155/585 (26%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GL+      L    +  +P   P + +                  
Sbjct: 10  RPIFASVLSLLMLISGLIA-----LRSLPISEYPEVAPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + +                 +T++F      +     V   +  
Sbjct: 56  PKVIAETVSTPLEESINGVDGMLYMGSQATTDGVMTLTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   +   
Sbjct: 116 AEPRLPEEVRRLGVTTVKSAPDLTMVVHLVSPNDRYDMTYLRNYAVLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   + + +       N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLAGVDMQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    A      
Sbjct: 236 SINAQGRLQSEE-------------EFGDIIVKTGADGAITRLRDIGRLELGSADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              +           +          S   
Sbjct: 283 LLNNKAAVGMGVFQAPGSNALDISAQVRSTMDEIAKNMPEGVEYRIAYDPTQFVRASIES 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++V+ T A+L LLG ++   S+ G+V
Sbjct: 343 VVHTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSVVGTFAVLHLLGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLSPRDATYRAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS   ++++  A+   +++        +       F  +  
Sbjct: 463 GLTGQFYKQFAVTIAISTVISAINSLTLSPALAALLLKGHDQPKDALTRGMDKAFGWLFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R      G           +L  +    G+ F     +
Sbjct: 523 GFNRMFHRGSEAYSGGVKRVIGRKTLMLAVYLALVGVTFGLFKSV 567



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 +  +  + + +   +    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPIAIVLIVPMGLFAAMLGVKLTGGDNNIFTQIGLIVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + VLP+ +    G  +  +  I +  G+
Sbjct: 960  -LEFAGRTPVQAAIEASRLRLRPILMTSLAFIMGVLPLVLSTGAGAEMRQAMGIAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +   +  +F+     + +  
Sbjct: 1019 IGVTAFGLFLTPVFYVLLRR 1038



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 82/223 (36%), Gaps = 17/223 (7%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L +     +      G     +  Q +         + E V+ +I          
Sbjct: 279 SLRSLLNNKAAVGMGVFQAPGSNALDISAQVRSTMDEIAKNMPEGVEYRIAYDPTQFVRA 338

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E V   +   +    +V ++               W  ++  +  + + +  T     
Sbjct: 339 SIESVVHTLLEAVALVVLVVIL-----------FLQTWRASIIPLLAVPVSVVGTFAVLH 387

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G   N  ++  ++  IG  V+D +VV + + +N++     +S RD   +++ E  G  
Sbjct: 388 LLGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEA---GLSPRDATYRAMREVSGPI 444

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           +  ++      +P+A      G     FA+ +A   V++A +S
Sbjct: 445 IAIALVLVAVFVPLAFISGLTGQFYKQFAVTIAISTVISAINS 487


>gi|325280871|ref|YP_004253413.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Odoribacter splanchnicus DSM 20712]
 gi|324312680|gb|ADY33233.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Odoribacter splanchnicus DSM 20712]
          Length = 1061

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/689 (12%), Positives = 190/689 (27%), Gaps = 44/689 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    ++++P+  P               +V+    
Sbjct: 9   RPIFATVLSILIVIAGLVS-----LRGLPVEQYPTITPPT-------------VVVRASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +   EG+   S         ++T++F      +     V  
Sbjct: 51  PGANASTIADMVGTPIEQQVNGVEGMLYMSSTSSSTGSYQLTITFEVGTDLDMATVLVEN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L  +  +  + TT E    ++      D     A+  S        +++G  
Sbjct: 111 RVNMALSTLPQEVTQIGVTTTKESTNVVMFLSLTSDSPQYDALFLSNYAALNITNELGRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     T A +       N        G   L   +
Sbjct: 171 KGVGNVGLFGMGKYSMRIWLDPDQLTIRGITPADIVSAIQGQNIQVTAGSVGSEPLVRKE 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +E K  +                 +    I       +         I       
Sbjct: 231 AYQYTLETKGLLIDEE-------------EFGNIIVKALPDGKYLRIRDLATIELGRESY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L    +           +     +        L +         V          
Sbjct: 278 SSTATLKGGAVAAIAVYQLPGANALDVAQRVKKEMDKLASYFPEGVQYSVTLDTTEFINA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LVL+V+ + +   +  L+   +I ++++ T   +++LG ++   ++
Sbjct: 338 SISGIYETLITAFILVLLVILIFLQNWRAMLIPLITIPVSLVGTFTFMAMLGFSINTLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            G+VL IGL VD  I++ E            +V  ++          +    +  L   +
Sbjct: 398 FGLVLAIGLVVDDAIIIVENSYRLIETGRYPTVKEAVIQAMKEVSGAVVGIVLVLLAVFI 457

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID---INPLS 529
              F G   G   + FA+T+ +S +IS F A+++  A+    ++ K+             
Sbjct: 458 PTAFIGGITGQLYKQFALTIAISTVISGFNALTLSPALCALFLKPKQPAKFFLFKAFNRF 517

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                     +     R   +   +   +  +              +      +   +  
Sbjct: 518 FEKTNHGYTWVITHFMRKSLMTFIVFLILSVLAFWGFIKWPRTFIPEEDQGYFIAFMQLT 577

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D +       +LQ         +G + ++    +    +   +    +           S
Sbjct: 578 DGASSSQTATALQKASAVLNQMEGIETYITINGFSMMSNANASNAATLFVMLKNWDQRKS 637

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAI 678
              + + +  + +             + +
Sbjct: 638 PQLSAQSLVNQFNGMAYEAIPEARTFAVL 666



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 59/146 (40%), Gaps = 6/146 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MRKNM 748
           W   L  + T+ + +  T  F A+ G   N   +  ++  IG  V+D +++ +   R  +
Sbjct: 364 WRAMLIPLITIPVSLVGTFTFMAMLGFSINTLTLFGLVLAIGLVVDDAIIIVENSYR--L 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
                  + ++ + +++ E  G  V   +      +P A  G   G +   FA+ +A   
Sbjct: 422 IETGRYPTVKEAVIQAMKEVSGAVVGIVLVLLAVFIPTAFIGGITGQLYKQFALTIAIST 481

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           V++  +++ ++  +       +    
Sbjct: 482 VISGFNALTLSPALCALFLKPKQPAK 507


>gi|284035940|ref|YP_003385870.1| acriflavin resistance protein [Spirosoma linguale DSM 74]
 gi|283815233|gb|ADB37071.1| acriflavin resistance protein [Spirosoma linguale DSM 74]
          Length = 1037

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/568 (11%), Positives = 156/568 (27%), Gaps = 44/568 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   G++           +  +P+  P                      
Sbjct: 10  RPVFAMVMSIVIVLFGII-----GFTFLGVREYPAIDPPVI---------SVRTNYTGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    ++  + ++       +     + IT+ F      E  A+ V   +   
Sbjct: 56  PDIIESQITEPIEKSLNSIEGIRTISSNSALGASTITVEFNLDADLEQAANDVRDKVAQA 115

Query: 123 NSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +L  D     ++         I+           +  + S        +++       
Sbjct: 116 QRQLPQDIDAPPVVTKADANSDPIIFMTVQST--TRNPTQLSDYAENVLQERLQTIPGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L     T+  +       N                +  + 
Sbjct: 174 QANIYGLKRQAMRLWIDPIKLSAYRLTSQDIQTALNAQNVELPSGKV------YGNTTEL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+    ++                    ++   +   +                     
Sbjct: 228 TVKAVGRLTTED--------------DFNNLILRQTSNQIVRFKDVGYATIGAENEETIS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        +   +     +        L+       +  +          +   
Sbjct: 274 KQNGAVGVILALIPQPGANYVSIADEFYKRFDQLKKDLPEDIIVSIGVDRSTFIRRAIEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V++               I +++I    ++ +   ++ + ++ GIV
Sbjct: 334 VGETLLISFVLVVLVIYFFFRDWLIAFRPLIDIPVSLIGAFFIMYVADFSINVLTLLGIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I ++  +      +   G +  +  +  +++T  I  + + F  
Sbjct: 394 LATGLVVDDGIVVTENIFKKIEQGMDTKEAAREGSNEIFFAVIATSVTLAIVFLPIIFLE 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F I +  ++LIS F ++++   + + +      +S        FF   D  
Sbjct: 454 GFVGRLFREFGIVVAGAVLISAFVSLTLTPVLSVKLTSKNHGRSWFYRKTEPFFEWLDNS 513

Query: 539 AI----QFMRARFWGVGISILFSICSIC 562
                  FM+ R W   +     +    
Sbjct: 514 YRSSLNSFMKKRGWAFVMIGACLLFIFG 541



 Score = 90.9 bits (223), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 90/248 (36%), Gaps = 7/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +N+ V    V       +  +   +        L  +     + V+          ++ 
Sbjct: 249 TSNQIVRFKDVGYATIGAENEETISKQNGAVGVILALIPQPGANYVSIADEFYKRFDQLK 308

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           + +P   I +  +      R  I +    ++IS + +++ I+  F+ W  A   +  + +
Sbjct: 309 KDLPEDIIVSIGVDRSTFIRRAIEEVGETLLISFVLVVLVIYFFFRDWLIAFRPLIDIPV 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +        +     N+  +  ++   G  V+D +VV + +    K     +  ++   
Sbjct: 369 SLIGAFFIMYVADFSINVLTLLGIVLATGLVVDDGIVVTENI---FKKIEQGMDTKEAAR 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +  NE     + TS+   I  LP+     + G +   F I +A  ++++A  S+ +   +
Sbjct: 426 EGSNEIFFAVIATSVTLAIVFLPIIFLEGFVGRLFREFGIVVAGAVLISAFVSLTLTPVL 485

Query: 820 LLFIYDWR 827
            + +    
Sbjct: 486 SVKLTSKN 493



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 66/164 (40%), Gaps = 7/164 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
              +    ++ I + + +  +F  +   L  + T+ L +   +    +F    N+ +   +
Sbjct: 854  NTLFAFGLALILVYLVLAAQFDSFIDPLIIMITVPLALAGAVFSLWMFNQTLNIFSQIGI 913

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + L+G    + +++ +   +      T  +  +   +S    L   + T++ A    LP+
Sbjct: 914  IMLVGLVTKNGILIVEFANEQRL---TGKNKFEAAAESAALRLRPILMTTLVAAFGALPL 970

Query: 787  AVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            A+  GS   S     I +  G++ +   ++++   I  ++   +
Sbjct: 971  ALALGSASKSRVPLGIVIVGGLMFSLILTLYVVPVIYTYMSRRK 1014


>gi|227875444|ref|ZP_03993585.1| protein-export membrane protein SecF [Mobiluncus mulieris ATCC
           35243]
 gi|227843998|gb|EEJ54166.1| protein-export membrane protein SecF [Mobiluncus mulieris ATCC
           35243]
          Length = 370

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 133/311 (42%), Gaps = 12/311 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     + Q ++ R   +   ++  + +I  +   G+N  IDFKGG    V  
Sbjct: 4   YAEWGNALYSGKKSYQIIKNRRIFLTTGLVLVLIAIIGIAIFGVNPSIDFKGGTDFTVTN 63

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +         +         + + F    N L     Q           E+ K      
Sbjct: 64  TQNNPPQQPAYDALKAAGITENPKVFQMGTNGLRVQTSQLATEKETQIQSELAKAYK--- 120

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
                  +   VGP     + R+  +G+++    + + +   F+ W  A+ A+  L+ D+
Sbjct: 121 -VNVKNVSKGSVGPSWGASVSRQAAIGLVVFLAMVSLLLMAYFRTWTMAVSALFALMHDL 179

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLID 762
             T+G FA   +E     +  +LT++GYS+ D VVV+D++R+N K     +  ++ +L +
Sbjct: 180 MITIGAFAFTQVEVTPATIIGLLTILGYSLYDTVVVFDKIRENTKDMMNQSRSTYDELAN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            SIN+T+ RS+ TS+ A + V  +        G S +   ++P+  G++V   SSIFIA 
Sbjct: 240 LSINQTMVRSINTSITAILPVSAILFLGSVLLGASTLRDISMPLFIGMIVGTFSSIFIAT 299

Query: 818 PILLFIYDWRA 828
           P+L  I +   
Sbjct: 300 PLLTIIRNHSQ 310


>gi|148547534|ref|YP_001267636.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           putida F1]
 gi|148511592|gb|ABQ78452.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida F1]
          Length = 1042

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/687 (12%), Positives = 183/687 (26%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P+  P               + +    
Sbjct: 8   RPVFAWVVALFILLAGALAI-----PQLPVAQYPNVAPP-------------QVEIYAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  + +     +   L                   IT +FA     +     V   
Sbjct: 50  PGASAATMDESVVSLIEQELNGADNLLYFESQSSLGSATITATFAPGTHPDLAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V S+L     +  L         ++L+    +         S  + R  +D+I   +
Sbjct: 110 LKVVESRLPRPVTQQGLQVEKVSTGFLLLATLTSEDGKLDETALSDILARNVMDEIRRLK 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +L     T   ++      N        G    R +  
Sbjct: 170 GVGKAQLYGS-ERAMRIWIDPRKLIGFNLTPNDVAEAIAAQNAQVAPGSIGDLPSRSTQE 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K ++S                     +                 +        
Sbjct: 229 ITANVVVKGQLS-------------SPEAFAAIVLRANPDGSTVTIGDVARVEIGAQEYQ 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G  L                +   T          L           +          S
Sbjct: 276 YGTRLNGKPATAFSVQLSPGANAMETATLVRAKMQDLARYFPEGVKYDIPYDTSPFVKVS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV  V+F+ +   ++ L+    + + ++ T A++  +G ++ + ++ 
Sbjct: 336 IEQVINTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALMGTFAVMLAMGFSVNVLTLF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +      +      +    I    +  +   + +
Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMAEEGLPPKDATRKAMGQISGAIVGITLVLVAVFLPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFF 532
            F  G      + F+++M +SIL S F A+S+  A+   +++                F 
Sbjct: 456 AFMQGSVGVIYQQFSLSMAVSILFSAFLALSLTPALCATLLKPVAKGEHHERKGFFGWFN 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG-----IDFKGGIQLGVLANR 587
              + ++  + R     +  S  + +    LL   G  +                +   +
Sbjct: 516 RRFERMSNGYQRWVVQALKRSGRYLLVYAVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQ 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +      +     +       G  N  + L +    S     +     K  +E   
Sbjct: 576 LPPGASRMRTEQVAAQIEAHNAEEPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSERGA 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             + Q+          +L       V+
Sbjct: 636 DDSAQSIADRATMAFTQLKDAIAYSVL 662



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 81/243 (33%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q      +                 +++    ++    + +    
Sbjct: 257 STVTIGDVARVEIGAQEYQYGTRLNGKPATAFSVQLSPGANAMETATLVRAKMQDLARYF 316

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I + I  +  + + +   +++  +   + L     + + + 
Sbjct: 317 PEGVKYDIPYDTSPFVKVSIEQVINTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALM 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++  IG  V+D +VV + +     +    +  +D   K++
Sbjct: 377 GTFAVMLAMGFSVNVLTLFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPKDATRKAM 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      LPMA   G   VI   F++ MA  I+ +A  ++ +   +   
Sbjct: 435 GQISGAIVGITLVLVAVFLPMAFMQGSVGVIYQQFSLSMAVSILFSAFLALSLTPALCAT 494

Query: 823 IYD 825
           +  
Sbjct: 495 LLK 497



 Score = 41.6 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W      +  + L +   +    L G+  ++     +
Sbjct: 866  QAPLLMALSLLVVFLCLAALYESWSIPTAVLLVVPLGVLGAVLAVTLRGMPNDVFFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG S  + +++ +  +    L    +   D   ++    L   V TS+A  + V+P+
Sbjct: 926  ITLIGLSAKNAILIIEFAK---HLVDQGVDAVDAAVQAARLRLRPIVMTSLAFILGVVPL 982

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSS 812
            A+  G+   S    +  G++    S+
Sbjct: 983  AIASGASSAS-QQAIGTGVIGGMLSA 1007


>gi|313675996|ref|YP_004053992.1| acriflavin resistance protein [Marivirga tractuosa DSM 4126]
 gi|312942694|gb|ADR21884.1| acriflavin resistance protein [Marivirga tractuosa DSM 4126]
          Length = 1019

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/620 (13%), Positives = 191/620 (30%), Gaps = 44/620 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  +I   G +           +  +PS  P   I++  D  G         
Sbjct: 10  QRPVLAIVLSLVILIFGFI-----GFNFLGVREYPSVDPP-IITVTTDYAG--------A 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    +E  + +        +  + +++IT+ F  S   E  A+ V   + G
Sbjct: 56  NADVVESQITEPLEEAVNGIAGIRTITSTSAEGRSRITIEFNLSEDLEAAANDVRDKVSG 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D +   +         IV    N +      +E S        +++       
Sbjct: 116 ARRRLPEDAEPPTVNKADADSDPIVFLNINSE--QRSLLELSAIAENTFKERLQTISGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     T   +       N            +      Q 
Sbjct: 174 EVRIWGEKRYAMRLWMDPIKLAAYQLTPLDVLNAVESQNVELPSGSIEGDMIELVVKTQG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + E                      D+   E                    +    
Sbjct: 234 QLSTEKEF--------------------NDLIIAESNNSFVRFSDIGYAELGPLNMRTVL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   +   +   +    ++        ++          +          S + 
Sbjct: 274 KRDGIPMVGVVLIPQPGSNSIDIVDEFYKRVDNIKKDLPEDINLGIGFDQTEYIRESINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++++F  +   +  ++   +I + +I T  ++ L G ++ + ++ GIV
Sbjct: 334 VQQTIIIAFLLVILIIFAFLRDWRTTVIPIATIPVALIGTFFVMYLAGFSINVLTLLGIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD  I+V E I  +         +   G    +  +  + +  +   + + F  
Sbjct: 394 LAIGLVVDDAIVVLENIYTKVEDGMEPMEAAKKGAVEIFFAVIATTVALVAVFMPVIFLE 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F + +  +++IS F A+S+   M   I++ ++  +        FF+  +  
Sbjct: 454 GITGRLFREFGVVVATAVMISSFVALSLTPMMSSRILKRRERHNWFYRKTEPFFVWLNKG 513

Query: 539 AIQ----FMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGVLANRPVDLSV 593
             +    FM+ R+ G+ + +        L  T       ++ +G I +            
Sbjct: 514 YARSLDGFMKVRWMGILLFLGAVGLIYGLFKTLPSELAPLEDRGMISVSTTGPEGATFEY 573

Query: 594 VRSNLESLQIGDISFQNFDG 613
           +   +++L    +     DG
Sbjct: 574 MGEYIDNLVEVTMDTLPTDG 593



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 71/219 (32%), Gaps = 6/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
             ++  Q             + V     ++     +         I   +       +I 
Sbjct: 282 GVVLIPQPGSNSIDIVDEFYKRVDNIKKDLPEDINLGIGFDQTEYIRESINEVQQTIIIA 341

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + +LI       W   +  I T+ + +  T     L G   N+  +  ++  IG  V+
Sbjct: 342 FLLVILIIFAFLRDWRTTVIPIATIPVALIGTFFVMYLAGFSINVLTLLGIVLAIGLVVD 401

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-- 793
           D +VV + +          +   +   K   E     + T++A     +P+    G    
Sbjct: 402 DAIVVLENI---YTKVEDGMEPMEAAKKGAVEIFFAVIATTVALVAVFMPVIFLEGITGR 458

Query: 794 -IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               F + +A  +++++  ++ +   +   I   R ++ 
Sbjct: 459 LFREFGVVVATAVMISSFVALSLTPMMSSRILKRRERHN 497



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 71/168 (42%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +     + I + + +  +F+ +   +  + T+ L +  +     LFG   N+ +   ++ 
Sbjct: 853  LFAFGFAIILIYLVLAAQFESFRDPVIILFTVPLAVGGSFLSLWLFGETLNIFSQIGIIM 912

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +     +S  + I ++        + T+++  + +LP+A+
Sbjct: 913  LIGLVSKNAILIVEFAN---QKKAQGLSLNESITEAAKSRFRPILMTALSTILGILPIAL 969

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G     S  I +  G++ A   ++++   I  F     A+ +R+
Sbjct: 970  ALGAGSESRVSMGIAIIGGLIFATGLTLYVIPAIYSFFASKHARVSRV 1017


>gi|299133746|ref|ZP_07026940.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Afipia
           sp. 1NLS2]
 gi|298591582|gb|EFI51783.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Afipia
           sp. 1NLS2]
          Length = 1055

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/598 (12%), Positives = 169/598 (28%), Gaps = 40/598 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               ++L  ++  +G +           +  +P   P               +V+     
Sbjct: 11  PILAMVLSIVLLIVGAIA-----YTTLPVAEYPQVAPPT-------------VVVTTQYP 52

Query: 64  DFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLF 118
                 +       +   +   E +     +   +   KIT++F      +     V   
Sbjct: 53  GASAQTVSDTVATPIEQQINGVEDMLYMYSQATSDGQLKITITFKLGTDLDKAQVLVQNR 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  + ++N +VT       +++            +  S   +RQ  DQ+   +
Sbjct: 113 VAIAQPQLPEEVQRNGVVTRKNSPDLLMVVFMLSPNDAYDQLYISNYALRQVRDQLLRLD 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP ++  L  T   +       N    G + G   + D   
Sbjct: 173 GIGDIQIFGARDYSMRLWLDPDKIANLGMTAGDVLAAIRAQNLQIAGGILGEPPIADRAL 232

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            + L                        +    +       R         I        
Sbjct: 233 QESLTFTG--------------RLKDPSQFEDIVIKAGADGRTVRLRDVARIELGALSYT 278

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L        + S +   +   T +        L+AG  P     +          S
Sbjct: 279 TNSFLLRKSAVALLVSQRPGSNALATSKNISNEMERLKAGFPPGLEYNIGYNPTEFIAQS 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            S    T      LV+IV+ + +   +  ++   +I ++++ T A+++ LG ++   ++ 
Sbjct: 339 VSELIKTIYEAMVLVVIVVLVFLQGWRPAIIPIVAIPVSLVGTFAVMAALGFSVNNLTLF 398

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATV 475
           G+VL +G+ VD  I+V E +        +   +  +       A  +I        + T 
Sbjct: 399 GLVLAVGIVVDDAIVVVENVERHLGAGMTRRDAALLTMQEVGGALVSIALVLCAVFVPTA 458

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            L    G   + FA+T+ ++  IS F ++++  A+   I+     K              
Sbjct: 459 FLGGISGQFFQQFAVTIAVATAISCFCSLTLSPALASLILESHHEKRPPAKWNLPAQWWG 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                      +     +          +   G+   +    G  L       +    
Sbjct: 519 RFTGYFNRGFDWLSDSYATAADFVIRHSVVMLGVYGLLIGSAGWLLVSTPKGFIPAQD 576



 Score = 62.4 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 65/201 (32%), Gaps = 8/201 (3%)

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688
              +       KK+   +  S                   G+    +  + + + +  ++ 
Sbjct: 842  TSSATAIEEMKKLAADILPSGFSYEWTDLSYQQVTAANAGLYVFPVCVLFVFLVLAAQYG 901

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +        + G + N+      + L+G +  + +++ +  R   
Sbjct: 902  SWTLPLSVILIVPMCLLAATIGVRIIGQDINILTQIGFVVLVGLAAKNAILIVEFARDIE 961

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                        + ++    L   + TS A  + VLP+ +    G  +  +  + + FG+
Sbjct: 962  HE---GKDTLHAVIEACRLRLRPILMTSFAFILGVLPLVISTGSGSEMRQAVGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDW 826
            +      + +  PI   +   
Sbjct: 1019 LGVTLFGL-LFTPIFYMLIRK 1038



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 55/148 (37%), Gaps = 13/148 (8%)

Query: 690 WYFALGAITTLILDIT---KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           W  A+  I  + + +      +      G   N   +  ++  +G  V+D +VV + +  
Sbjct: 364 WRPAIIPIVAIPVSLVGTFAVMAA---LGFSVNNLTLFGLVLAVGIVVDDAIVVVENV-- 418

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
             +     ++ RD    ++ E  G  V  ++      +P A  G   G     FA+ +A 
Sbjct: 419 -ERHLGAGMTRRDAALLTMQEVGGALVSIALVLCAVFVPTAFLGGISGQFFQQFAVTIAV 477

Query: 804 GIVVAASSSIFIAAPIL-LFIYDWRAKN 830
              ++   S+ ++  +  L +     K 
Sbjct: 478 ATAISCFCSLTLSPALASLILESHHEKR 505


>gi|149928041|ref|ZP_01916289.1| acriflavine resistance protein B [Limnobacter sp. MED105]
 gi|149823229|gb|EDM82465.1| acriflavine resistance protein B [Limnobacter sp. MED105]
          Length = 1044

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/626 (10%), Positives = 162/626 (25%), Gaps = 38/626 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           + ++P+  P                      
Sbjct: 8   RPIFAWVIAIVIMLAGALAIF-----NLPVAQYPAIAPPAVT---------IQATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + L        +     + +I L+F      +    +V   L  
Sbjct: 54  AETLQDSVTQVIEQRMTGLDGFRYMKSTSDSTGRLRIELTFEPGTNPDIAQVQVQNKLSL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +  T      +++           + E +  I     D +       
Sbjct: 114 AVPLLPDAVQRQGIQVTKSATGYLLVIAFTAVDGAYTSTELADFITTNVQDTVSRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +P ++ Q   T   +    +  N        G            
Sbjct: 174 EVQVFGSP-YAMRIWLNPDKMNQFKVTPGDIRSAVLAQNAQVSAGELGGAPAVKGQTLTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      I                 I           
Sbjct: 233 TITAQTLL-------------ETPKDFEQIILRTTEDGATVRLKDVARIDYGSENYNILP 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T E        +           V          S   
Sbjct: 280 RWNGRNASGIGIRLASGANALDTAEGVIAEMERITPLIPEGMEWDVAYDTTPFVKISIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++  +V
Sbjct: 340 VVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLSAFGFSINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLSPLEATRKSMDQITGALVGIGLVLSAVFVPMAFF 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFF 532
               G   + F+IT+  ++ +S+  A+ +  A+   +       +   K       +R F
Sbjct: 460 PGSAGVIYKQFSITIVSAMALSVIVALVLTPALCATMLKPVEKGHTHEKKGFFGWFNRKF 519

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
              +      +       G S++     + +           F      GV   +    +
Sbjct: 520 DSSNARYQGAVGRMLHKSGRSLIIYGGLLAITAFMFTRLPTSFLPDEDQGVFFTQVQLPA 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFL 618
                     +  +     + E + +
Sbjct: 580 GATQEQTLQVLAKMEDYFLNEEGDNV 605



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 81/217 (37%), Gaps = 8/217 (3%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            + +N  G    L         +      +E +   I E +      +T          +
Sbjct: 281 WNGRNASGIGIRLASGANALDTAEGVIAEMERITPLIPEGMEWDVAYDTTPFVKISIEGV 340

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           ++  I  +I+  + M +++     +   L     + + +  T    + FG   N   + A
Sbjct: 341 VKTLIEAIILVFLVMYLFLQ---NFRATLIPTIAVPVVLLGTFAVLSAFGFSINTLTMFA 397

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  IG  V+D +VV + +     +    +S  +   KS+++  G  V   +      +P
Sbjct: 398 MVLAIGLLVDDAIVVVENV--ERVMAEEGLSPLEATRKSMDQITGALVGIGLVLSAVFVP 455

Query: 786 MAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
           MA + G   VI   F+I +   + ++   ++ +   +
Sbjct: 456 MAFFPGSAGVIYKQFSITIVSAMALSVIVALVLTPAL 492



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 76/249 (30%), Gaps = 9/249 (3%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                   + +  +   +  V  N    +     +     +     + ++G     ++ Q 
Sbjct: 770  YMQADAPFRMLPEDLNRFYVRNNDGEMVPFSNFSSAQWSMASPRLERYNGLPAVEIQGQA 829

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
             PG S                               +   +      + ++I  + +   
Sbjct: 830  APGMSSGDAMDAMEAIAANLPEGMGIEWTGLSYEERQSGSQAPLLYALSLLIVFLCLA-- 887

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +   W      +  + L +   L   +  G+  ++    A+LT +G S  + +++ + 
Sbjct: 888  -ALYESWSIPFAVMLIVPLGVVGALLAASGRGLANDVYFQVALLTTVGLSAKNAILIVEF 946

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             ++    +       +    ++   L   + TS+A  + V+P+A+    G     +    
Sbjct: 947  AKE---QFDQGRDLLEATLDAVRMRLRPIIMTSLAFGLGVVPLAISTGAGSGSQNAIGTG 1003

Query: 801  MAFGIVVAA 809
            +  G + A 
Sbjct: 1004 VLGGTISAT 1012


>gi|31793770|ref|NP_856263.1| preprotein translocase subunit SecF [Mycobacterium bovis AF2122/97]
 gi|121638471|ref|YP_978695.1| preprotein translocase subunit SecF [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224990965|ref|YP_002645652.1| preprotein translocase subunit [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|31619364|emb|CAD94802.1| PROBABLE PROTEIN-EXPORT MEMBRANE PROTEIN SECF [Mycobacterium bovis
           AF2122/97]
 gi|121494119|emb|CAL72597.1| Probable protein-export membrane protein secF [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224774078|dbj|BAH26884.1| preprotein translocase subunit [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 442

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 133/296 (44%), Gaps = 11/296 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    G+S      +I  +   G  +GIDFKGG  +           V      +L  
Sbjct: 62  GRRRLWFGVSGAIVAVAIASIVFRGFTFGIDFKGGTTVSFPRGSTQVAQVEDVYYRALGS 121

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659
              S        +  V+++ +   S    ++ + + +          P     +   V  
Sbjct: 122 EPQSVVIVGAGASATVQIRSETLTSDQTAKLRDALFEAFGPKGTDGQPSKQAISDSAVSE 181

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++ +K ++ +++  + + +YI +R++ Y  + AIT ++ D+T T G ++L G E  
Sbjct: 182 TWGGQITKKAVIALVVFLVLVALYITVRYERYMTISAITAMLFDLTVTAGVYSLVGFEVT 241

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D V+V+D++ +N     +TT  +F +  + +IN+T  RS+ TS+
Sbjct: 242 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTFMRSINTSL 301

Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + VL +      + G   +   A+    GI++   SSIF A P+L+ + +   
Sbjct: 302 IGVLPVLTLMVVAVWLLGVGTLKDLALVQLIGIIIGTYSSIFFATPLLVTLRERTE 357


>gi|197335732|ref|YP_002155636.1| protein-export membrane protein SecF [Vibrio fischeri MJ11]
 gi|197317222|gb|ACH66669.1| protein-export membrane protein SecF [Vibrio fischeri MJ11]
          Length = 299

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 79/276 (28%), Positives = 147/276 (53%), Gaps = 6/276 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R     +S+   I ++ ++ T GLN+G+DF GGI   V  +  +  S +   L++   
Sbjct: 10  KWRHMTSVVSVCLMIFALTMIATKGLNWGLDFTGGIVSEVQMDSKITNSEIAPLLDAGFK 69

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            D++         +++R    P  +         + + +  +     + NT IVGP++ +
Sbjct: 70  QDVAVIASGEPGRWVLRYAIPPHGTELPP-----LTEVLASLHTDVQVLNTSIVGPQVGQ 124

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + +++S + +L Y+  RF+W  A G++  L  DI   LGFFA   +EFNLT +
Sbjct: 125 ELTEQGGMALLVSVLVILAYLSYRFEWRLASGSLFALTHDIVFVLGFFAATQMEFNLTTL 184

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA+L ++GYS+ND +++ DR+R+ + +    +S +++ ++++  T  R++ TS    I+V
Sbjct: 185 AAILAILGYSLNDSIIIADRIRE-LLIAKPELSIQEINNEAVAATFSRTMVTSGTTLITV 243

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             + + GG  +  FAI M  GIV    SSI +   +
Sbjct: 244 GSLWLLGGGPLEGFAIAMFIGIVTGTWSSISVGTSL 279


>gi|260592047|ref|ZP_05857505.1| HAE1 efflux family protein [Prevotella veroralis F0319]
 gi|260535925|gb|EEX18542.1| HAE1 efflux family protein [Prevotella veroralis F0319]
          Length = 1062

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 68/546 (12%), Positives = 161/546 (29%), Gaps = 40/546 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  IG+L           + +FPS  P               + +  +
Sbjct: 7   RRPVLSIVIALVIAFIGILCLF-----NLPITQFPSISPPK-------------VNVTAE 48

Query: 62  EDDFVNGF-LQMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                N   ++     L   L    G+         +   ++ + F         A  V 
Sbjct: 49  YPGANNELLVKSVIIPLEQALNGVPGMKYIESDAGNDGEAELNVVFKLGTDPNVDAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL  +  +  +  + E+   ++      D    +              ++  
Sbjct: 109 NRVSAATNKLPPEVIREGVQISREEPNILMYINLYSDDPSVNQDFLFNYFDINISPELLR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P ++     +T  +S      N        G       
Sbjct: 169 VDGVGDLDILGTRSYAMRVWLHPDKMTAYGLSTDDVSDALEDQNIEVSPGKLGESGGTRP 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +++++     +                +    I       +        +I     V
Sbjct: 229 QVKEFVLKYPGRYT-------------TAEQYGNIILKSTPDGQAVRLKDIADIHLGSEV 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                + +  I+        L+          +         
Sbjct: 276 YDIYSTLNGRPSAAVTLKQAYGSNASNVIKQVKQTMTRLQKDMPKGMHYEISYDISRFLN 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F+ +   +  ++   ++ ++++ +   +     TL + S
Sbjct: 336 ASIEKVVHTLFEAFVLVALVVFIFLGDWRSAVIPVLAVPVSLLGSFIAMLAFNITLNMIS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +V+ IG+ VD  I+V E +  +  +N+ S   + +         I   ++      +
Sbjct: 396 LFALVMAIGIVVDDAIVVIEAVNVQIARNKLSPVEATEKAMKEISGAIIAISLVMASVFI 455

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F G   G   R F+ITM  SIL S F A+++  A+   I+  ++  ++ +  + R  
Sbjct: 456 PVAFMGGPEGMFYRQFSITMASSILFSGFVALTLTPALCALILTKEQEHNVKLGFIGRLL 515

Query: 533 LIPDCI 538
              +  
Sbjct: 516 KKFNTT 521



 Score = 93.2 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 96/249 (38%), Gaps = 6/249 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V L  +       ++ DI           +   Q    ++    + ++    ++ + +
Sbjct: 259 QAVRLKDIADIHLGSEVYDIYSTLNGRPSAAVTLKQAYGSNASNVIKQVKQTMTRLQKDM 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P            +     I K +  +  + + + + ++I    W  A+  +  + + + 
Sbjct: 319 PKGMHYEISYDISRFLNASIEKVVHTLFEAFVLVALVVFIFLGDWRSAVIPVLAVPVSLL 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            +      F I  N+ ++ A++  IG  V+D +VV + +  N+++    +S  +  +K++
Sbjct: 379 GSFIAMLAFNITLNMISLFALVMAIGIVVDDAIVVIEAV--NVQIARNKLSPVEATEKAM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  +  S+      +P+A  GG        F+I MA  I+ +   ++ +   +   
Sbjct: 437 KEISGAIIAISLVMASVFIPVAFMGGPEGMFYRQFSITMASSILFSGFVALTLTPALCAL 496

Query: 823 IYDWRAKNA 831
           I     ++ 
Sbjct: 497 ILTKEQEHN 505



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 72/255 (28%), Gaps = 11/255 (4%)

Query: 579  IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
                      +        L+ +       ++     + +         S      +  V
Sbjct: 787  HLYTKNDEGNMVPYSDFMTLQKVYGMSEITRHNLYNSSEVTGAPAPGYSSGQALNAISEV 846

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
             +K                            I+  I+  + + + +  +++ +   L  I
Sbjct: 847  AEKSLPKGYDYDWAGISKDEVDQGN----TAIIIFIVCLVFVYLILAAQYENFLLPLPVI 902

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
              L + I     F  L G+E N+ A  A++ LIG    + V++ +     ++        
Sbjct: 903  IFLPVGIFGAFLFLKLCGLENNIYAQIALVMLIGLLGKNAVLMVE---YAVQRKNLGQPI 959

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIF 814
                 +         + TS+A    ++P+    G   I   +       G++V     + 
Sbjct: 960  LHAAIEGAVARFRPILMTSIAFIAGLIPLVFASGAGAIGNKTIGTAAVGGMIVGTMFGLL 1019

Query: 815  IAAPILLFIYDWRAK 829
            +   +         K
Sbjct: 1020 LIPGLYNIFASMADK 1034


>gi|114328206|ref|YP_745363.1| acriflavin resistance plasma membrane protein [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316380|gb|ABI62440.1| acriflavin resistance plasma membrane protein [Granulibacter
           bethesdensis CGDNIH1]
          Length = 1046

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/684 (10%), Positives = 177/684 (25%), Gaps = 52/684 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  IGL            ++++P  +P               + +    
Sbjct: 10  RPILASVVSIFITLIGLGALF-----ALPVEQYPDIVPPT-------------VQISTSY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L+  +   E +   S +   +    +T++F               
Sbjct: 52  PGASAEVVDQSVATPLQQQINGVENMLYMSSQSTGDGKLSLTVTFRLGTDLNMAQVLTQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    ++  +         +++            +  S        D +   
Sbjct: 112 RVTQALPRLPDQVQRLGVTVQKVTPSILLVVHLVSPDESRDQLYLSNYATLHVKDVLARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +      T  ++       N      +   +    ++
Sbjct: 172 PGVGNVQLFGGRDYAMRIWLDPDKAAAHDVTAEEIVSALRAQNIQVSAGVLNQQPTPSAE 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  V+    +                 +    I  ++                     
Sbjct: 232 AYELNVQTLGRL-------------HTAEEFADIIVKNDRQGHIVRIRDIGRAEVGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +     E       +L     P     ++         
Sbjct: 279 SSAAYLDLGEAIPLAIYAQPGANSLAVDEEVKEAMKILSKDFPPGVAYTIQYDPTEFISK 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T  I   LV+ V+ + +   +  LV   +I +++I T  +L+L G TL   S+
Sbjct: 339 SVYEVEDTILIAILLVVGVVILFLQTWRASLVPVIAIPVSLIGTFTVLALFGITLNNLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL +G+ VD  I+V E +    R   S   +          A   I  +     + +
Sbjct: 399 FGLVLAVGIVVDDAIVVVENVERNLRAGMSPSEAAHRTMDEVGGALIAIALTLCAVFVPS 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------------ 522
             L    G   R FA+T+  S +IS   ++++  A+   + R     +            
Sbjct: 459 AFLSGITGAFFRQFAVTIAASTVISAIVSLTLSPALCAVLFRPHDHHTPRGTILSRLVAR 518

Query: 523 -IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              +      +L      +  +  R  G+ +     + ++          G         
Sbjct: 519 GFALFNRGFDWLSDRYGRLTRVLLRGVGLVMLAYAGLIALTGFQFSRAPTGFIPDQDKSY 578

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V   +    + +    ++++          G  + +         S   +    +    
Sbjct: 579 LVTLIQLPPGASLDRTKQAVREVTKIIMETPGVSHAVPFAGLDIASSTNASNAATVFSTL 638

Query: 642 ITEIVPLSTIQNTEIVGPKISREL 665
                      +  ++   + R L
Sbjct: 639 RDFDEREKKGLSAPVILKDMQRRL 662



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 90/234 (38%), Gaps = 6/234 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ + +      ++ +        +  Q           V E +K    +  P       
Sbjct: 270 RAEVGAQDYSSAAYLDLGEAIPLAIYAQPGANSLAVDEEVKEAMKILSKDFPPGVAYTIQ 329

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 IS+ +       +I   + + + I     W  +L  +  + + +  T    ALF
Sbjct: 330 YDPTEFISKSVYEVEDTILIAILLVVGVVILFLQTWRASLVPVIAIPVSLIGTFTVLALF 389

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           GI  N  ++  ++  +G  V+D +VV + + +N++     +S  +   ++++E  G  + 
Sbjct: 390 GITLNNLSLFGLVLAVGIVVDDAIVVVENVERNLRA---GMSPSEAAHRTMDEVGGALIA 446

Query: 775 TSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            ++      +P A      G+    FA+ +A   V++A  S+ ++  +   ++ 
Sbjct: 447 IALTLCAVFVPSAFLSGITGAFFRQFAVTIAASTVISAIVSLTLSPALCAVLFR 500



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/201 (11%), Positives = 69/201 (34%), Gaps = 7/201 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
               +++ E V                +      ++    +A+ + + +  +++ W   L 
Sbjct: 848  AHMERLAEQVLPHGFGVEWTELAYQQQMKGTPTLLVFGAAALFVFLVLAAQYESWKLPLA 907

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             +  + + +   +      G+  ++ A    + L+G +  + +++ +  R   +      
Sbjct: 908  VVLIVPMCLLAAVTGLLWRGMAIDILAQIGFVVLVGLAAKNAILIVEFAR---QAEDEGA 964

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
            +     + +    L   + TS+A  + VLP+ V    G  +  S    +  G++      
Sbjct: 965  TPAAAAEHAARTRLRPILMTSLAFILGVLPLVVATGAGAEMRQSLGTTVFAGMLGVTGFG 1024

Query: 813  IFIAAPILLFIYDWRAKNARI 833
            + +       I     +  R+
Sbjct: 1025 LLLTPSFYTLIARIGRQRGRL 1045


>gi|260769114|ref|ZP_05878047.1| protein-export membrane protein SecD [Vibrio furnissii CIP 102972]
 gi|260614452|gb|EEX39638.1| protein-export membrane protein SecD [Vibrio furnissii CIP 102972]
 gi|315181653|gb|ADT88566.1| protein-export membrane protein SecD [Vibrio furnissii NCTC 11218]
          Length = 611

 Score =  186 bits (470), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 147/513 (28%), Positives = 264/513 (51%), Gaps = 27/513 (5%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            +   S+  ++   +  N I LGLDLRGG   +L VD D           DE++  L++E
Sbjct: 112 TYSYVSVAPKWYGKLGLNPIKLGLDLRGGVQFLLNVDVDKAFQEQRDTMVDEVKDMLRRE 171

Query: 85  GIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
            +    +     + +++        +    KV  + +   S           V  +  ++
Sbjct: 172 HLRGVRVLSQGVDGLSV----DTKSDAALTKVATYFKQNYSG--------WEVKRSSDKL 219

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  ++ N  +  S  ++Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 220 VVTPTKQNKLEFQSVTLQQNLKIMRDRIEELGITEALVQRQGEHSIRIELPGVQDPSQAK 279

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++F++                L+D++G   ++  +  ++G H+  A A  D 
Sbjct: 280 NVIGATASLAFYEAK--TGSDAMSNDSLVLKDNNGRTVVLNKRPVLTGDHIVNARAGVDN 337

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V R+              + +    Q+ 
Sbjct: 338 MGLSEVNISLDHAGGKIMSDFSGKRIGKPMATVYREYKTNARGETERSERVISVATIQSQ 397

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  + + A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  G+
Sbjct: 398 LGSQFRITGAGSADEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFSALALGM 457

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 458 AMTLTFMALWYRRLGWVANLALLANMVCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 517

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERI+++ ++ +S   ++D+GFS A+STI D+NIT +I  ++L+  G G ++GFA+T
Sbjct: 518 VLIFERIKDKLKEGRSFAQAIDLGFSSAFSTILDANITTMITALILYSIGNGPIQGFALT 577

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMFT +   RA++  +      + + 
Sbjct: 578 LGLGLLTSMFTGVFASRAIINLVWGRDNRRDVR 610



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A       +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 409 SADEAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFSALALGMAMTLTFMALWY 468

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L+ ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 469 R-RLGWVANLALLANMVCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDK 527

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +K      SF   ID   +      +  ++   I+ L +   G   I  FA+ +  G++ 
Sbjct: 528 LKE---GRSFAQAIDLGFSSAFSTILDANITTMITALILYSIGNGPIQGFALTLGLGLLT 584

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  I+  ++    + 
Sbjct: 585 SMFTGVFASRAIINLVWGRDNRR 607


>gi|283781747|ref|YP_003372502.1| protein-export membrane protein SecD [Pirellula staleyi DSM 6068]
 gi|283440200|gb|ADB18642.1| protein-export membrane protein SecD [Pirellula staleyi DSM 6068]
          Length = 1192

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/262 (25%), Positives = 121/262 (46%), Gaps = 16/262 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   A R   L+  RS +       +   ++D         ++     V+  +  +++ 
Sbjct: 919  SISAQALRDRVLNAARSAINEDLSVKLENPDWDNLDQTAAFKEWTVTLPVSTDKAAKVID 978

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
               +E+      Q +  +G ++S +   + I  +  S   M+ YIW RF    + + A  
Sbjct: 979  AMKSELDGAPVWQTSSKIGGQVSSDTRWRAIAALAFSIAGMIAYIWYRFNNVTWGIAAAV 1038

Query: 699  TLILDITKTLGFF-------ALFGI------EFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             L+ D    LG         +L G       + +L  VAA LTLIGYSVND +V++DR+R
Sbjct: 1039 ALLHDSLIMLGAIAASLWLTSLLGFAGVEEFKISLPVVAAFLTLIGYSVNDTIVIFDRIR 1098

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
            +      +      +++ S+N+TL RS+ TS    + V  +  +GG  + +FA  +  G+
Sbjct: 1099 E--IRGKSPDITSKIVNDSVNQTLSRSLLTSGTTLMVVTILYFFGGPGVHAFAFALVIGV 1156

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
            +  + S+I+IA+PILL++    
Sbjct: 1157 IAGSYSTIYIASPILLWLLGKE 1178



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 154/649 (23%), Positives = 270/649 (41%), Gaps = 45/649 (6%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD-EDDFV---N 67
             +     L ALP  L  +               LG+DL+GG  LV EVD  +       
Sbjct: 61  LGLVLAAFLGALPMVLFGNY-------------KLGVDLQGGVILVYEVDKVETAALDPQ 107

Query: 68  GFLQM-----YSDELRSFLKKEGIGVFSMR---QIQNKITLSFADSRFKENIADKVTLFL 119
           G             L   L  +G+    +R     Q +I +   DS   E I  ++T   
Sbjct: 108 GRSDNWDMPALIKVLGKRLNPDGLKEIVIRPFGTEQIEIVVPEVDSNEVELIKQRITTGG 167

Query: 120 QG-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                   +    + L+    E+     L      +     I       R+     G  E
Sbjct: 168 ALRFMVVADPSIDQQLVEIAREQSQRPGLELEKSVKNGEELIGFWARAARE---TDGDPE 224

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           S          L         +R  Q++     +             ++  +        
Sbjct: 225 SAETAQFRDPSLFYSVIRD--ARTGQIIDLPPNVIGQLAQNPGFFAPYLQSLGHK--QID 280

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                    +I G  L            +P +  S    G  +   +T  N+ + LA+V 
Sbjct: 281 VLLTFNQDYDIRGEDLGVPAE-GRDSQLRPCILFSMKGEGRAKMGALTSANLQRKLAIVF 339

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV--EERNVGADL 356
           D  +L+AP I Q   S   QI+G F+      +  +L++GS+P+ L      E  +G+ L
Sbjct: 340 DNELLSAPTI-QERISDNGQITGQFSEAEVRFMVEILKSGSMPVVLYKNPISENRIGSIL 398

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G D+I KG+ AI+  L+L++ F++V Y   G+VA F++ LN++LT+A + LL A  TLP 
Sbjct: 399 GMDTIIKGSRAIIVSLLLVLGFVLVYYRVSGIVACFALVLNILLTVAAMILLQAPFTLPG 458

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +AG+VL +G++VD+N+L+ ERIREE  +  ++  ++  GF RA++TI DSN+T L+  VV
Sbjct: 459 LAGLVLTVGMSVDANVLIYERIREELARGAALRMAIRNGFERAFTTILDSNLTTLLTAVV 518

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           L+  G   +RGF I++   IL SMFTA+   R ++    R  + K++++           
Sbjct: 519 LYVIGTDQIRGFGISLIFGILTSMFTAVFCSRVILELGERAFRWKTLEMT------KFMT 572

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGVLANRPVDLSVVR 595
              I +++       +S++  +  +      G   + ID  GG  +      P+  + VR
Sbjct: 573 NPTIDWVKYFAPATTVSVVLILIGLVATIARGPGLFDIDLAGGTSVTFTLKEPIQDAEVR 632

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           + L+S+       ++   + ++L+      G        ++   +++ +
Sbjct: 633 TMLDSV-FKGAVNESTKSKVDYLINEVQVEGSPAGSNYKVDSSLEEVDD 680



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 102/244 (41%), Gaps = 5/244 (2%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             + ++  L  +   ++       E+                  ++E++K     +V   
Sbjct: 327 TSANLQRKLAIVFDNELLSAPTIQERISDNGQITGQFSEAEVRFMVEILKSGSMPVVLYK 386

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              +   +G  +  + I KG   +I+S + +L ++ + ++    + A   L+L+I  T+ 
Sbjct: 387 NPISENRIGSILGMDTIIKGSRAIIVSLLLVLGFVLVYYRVS-GIVACFALVLNILLTVA 445

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L    F L  +A ++  +G SV+  V++Y+R+R+ +       + R  I        
Sbjct: 446 AMILLQAPFTLPGLAGLVLTVGMSVDANVLIYERIREELA---RGAALRMAIRNGFERAF 502

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              + +++   ++ + + V G   I  F I + FGI+ +  +++F  + ++L + +   +
Sbjct: 503 TTILDSNLTTLLTAVVLYVIGTDQIRGFGISLIFGILTSMFTAVF-CSRVILELGERAFR 561

Query: 830 NARI 833
              +
Sbjct: 562 WKTL 565


>gi|163801990|ref|ZP_02195886.1| acridine efflux pump [Vibrio sp. AND4]
 gi|159174131|gb|EDP58939.1| acridine efflux pump [Vibrio sp. AND4]
          Length = 1053

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 179/686 (26%), Gaps = 38/686 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G++           + ++P+  P              +       
Sbjct: 8   RPVFAWVLAILTMLAGVMSLF-----NLPVSQYPTISPTTI---------SINARYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        S        ITL+F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQNMTGLDYLRYLNSSSDAFGNATITLTFDSEADPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L ++ +   ++        +++     +       +    ++    D I       
Sbjct: 114 AMTSLPMEVQSQGIIVNKSNTSFLMVVAVYSENPNFTENDIGDFVVTNIQDPISRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L Q   T   ++      N        G    +       
Sbjct: 174 QVQAFGSQ-YAMRVWLDPFKLTQFNLTAIDVANAIREQNAQVSSGQLGAAPAQSGQLLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     ++ +              +    I   E      +      + +         
Sbjct: 233 TISSASRLTSVA-------------EFRNIILKSEPNGSNVYLKDVARVERGAESYDIKG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +   T E        L A                    S   
Sbjct: 280 QYNGFPAAGLGISLGTGANALETAEAVKERLGQLSATFPDGLKIAYPFETTPFVDASIKE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  ++   ++ + ++ T A+L   G ++   ++  +V
Sbjct: 340 VIKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLGTFAILYATGFSVNTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +        +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEDGLDPKEATKKSMGQITGALVGVGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPLSRFF 532
            G      R F+IT+  ++ +S+  AI +  A+   +++         K        +F 
Sbjct: 460 SGSTGVIYRQFSITIVAAMTLSVLVAIILTPALCASLLKKGDAEFSDKKGFFGWFNRKFD 519

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      +       + ++F+  S    +              Q  V +   +  +
Sbjct: 520 AATAGYEAGVAKMLKRTGRMLLVFAAMSAGAGWLFMNLPTSFLPDEDQGTVFSMAILPPN 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             +   E       ++   + + N              Q + + M    + +        
Sbjct: 580 STQEQTEKTLEKVRNYFLEEEQDNVASVFSVAGFSFAGQGQNMGMAFVGLKDWSEREAPG 639

Query: 653 NTEIVGPKISRELIRKGIVGVIISAI 678
           +        +          ++ +  
Sbjct: 640 SDAASLTGRAMGYFSTIKEAMVFAFA 665



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 83/244 (34%), Gaps = 6/244 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  Q        L        +++     ++    +++   
Sbjct: 258 SNVYLKDVARVERGAESYDIKGQYNGFPAAGLGISLGTGANALETAEAVKERLGQLSATF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I++ I  ++ + + + + +++  + +   +     + + + 
Sbjct: 318 PDGLKIAYPFETTPFVDASIKEVIKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N   + A++  IG  V+D +VV + +     ++   +  ++   KS+
Sbjct: 378 GTFAILYATGFSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEDGLDPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V   +      +PMA   GS       F+I +   + ++   +I +   +   
Sbjct: 436 GQITGALVGVGLTLSAVFVPMAFMSGSTGVIYRQFSITIVAAMTLSVLVAIILTPALCAS 495

Query: 823 IYDW 826
           +   
Sbjct: 496 LLKK 499



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 75/245 (30%), Gaps = 11/245 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                        +       V  S   +   +     +   N     N            
Sbjct: 776  HRMQPKDFDSWYVRNSQGEMVPFSAFATGEWTYGSPLLQRFNGLPAMNIQGGAAPGVSTG 835

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   +  MV+K            + E         ++        +S + + + +   +
Sbjct: 836  EAMAEIEAMVEKLPPGFTVNWNGISYEERLSGNQAPMLY------ALSILVVFLVLAALY 889

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +  + L +   +      G++ ++    ++LT +G +  + +++ +  ++ 
Sbjct: 890  ESWSVPFAVVLVVPLGVLGAVLAVMTRGMDNDVFFQVSLLTTVGLATKNAILIVEFAKEY 949

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
               Y       +    ++   L   + TS+A  + V+P+A+  G         +  G++ 
Sbjct: 950  ---YEKGAGLIEATLHAVRVRLRPIIMTSLAFGLGVVPLAISAGVGSAGQN-AVGTGVLG 1005

Query: 808  AASSS 812
               S+
Sbjct: 1006 GMVSA 1010


>gi|15606286|ref|NP_213665.1| protein export membrane protein SecD [Aquifex aeolicus VF5]
 gi|6647809|sp|O67102|SECD_AQUAE RecName: Full=Protein-export membrane protein secD
 gi|2983481|gb|AAC07060.1| protein export membrane protein SecD [Aquifex aeolicus VF5]
          Length = 501

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 160/485 (32%), Positives = 261/485 (53%), Gaps = 22/485 (4%)

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
            I+LGLDL+GG   +LE D    +    +  +  LR  L K  +      +    + +  
Sbjct: 32  PINLGLDLKGGVEFLLEPDFSVAIEREYEDLARNLREKLSKFNVLEVYATKEG--VIIEL 89

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
            D +  ENI   +             D   N++      ++ +  +Q  ++Q+    + Q
Sbjct: 90  LDKKEVENIKKVIQ------------DINPNVIFEEEGDKLVVKFTQKYVEQLKEDIVRQ 137

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
           S+EIIR RID++G+++  + R+G +RIL+ LPG  D  R ++++G+TA +    V+  ++
Sbjct: 138 SIEIIRDRIDKLGVTQPVVTRVGKYRILVDLPGFLDVERAKKIIGSTASLELKLVIDVST 197

Query: 223 KKG------FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
            +                      +LVE    I+G  L            +P V+     
Sbjct: 198 DRKELEKKLTPDREILPSRDGREWFLVEKAPVITGQDLKT-AYVGVDNLGQPAVNFELKG 256

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
             A +F + T  NIGK LA+VLD +V++APVI     S + QI+GNFT + A  LA +LR
Sbjct: 257 EAAEKFGKFTEQNIGKRLAIVLDRKVVSAPVIRS-KISDRGQITGNFTAQEARDLALILR 315

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
            GSLP  L  ++E+ VG  LG D+I +G  A +  ++L+ + +I  Y   G+ A+ SIFL
Sbjct: 316 TGSLPSPLKFLQEKIVGPSLGKDAIEQGIKAGILAIILLAVVLIARYKTAGITANISIFL 375

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           NV+  LA ++ LGATLTLP IAGI+L +G+AVDSN+L+ ER++EE R   +V  ++++GF
Sbjct: 376 NVLFLLASMAFLGATLTLPGIAGIILNMGIAVDSNVLIFERVKEELRLGNTVSKAIELGF 435

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            R  S ++D+++T L+A+V+LF FG G V+GFA T+ L  + S  + +   +  +  +  
Sbjct: 436 KRTLSAVWDTHVTLLVASVILFQFGSGPVKGFATTLALGTIASFISNVYYAKVFLDLLNS 495

Query: 517 YKKMK 521
            K +K
Sbjct: 496 LKILK 500



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 80/173 (46%), Gaps = 4/173 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I +GI   I++ I + + +  R+K    + A  ++ L++   L   A  G  
Sbjct: 332 GPSLGKDAIEQGIKAGILAIILLAVVLIARYK-TAGITANISIFLNVLFLLASMAFLGAT 390

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++++R+++ ++L     +    I+     TL     T +
Sbjct: 391 LTLPGIAGIILNMGIAVDSNVLIFERVKEELRL---GNTVSKAIELGFKRTLSAVWDTHV 447

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              ++ + +  +G   +  FA  +A G + +  S+++ A   L  +   +   
Sbjct: 448 TLLVASVILFQFGSGPVKGFATTLALGTIASFISNVYYAKVFLDLLNSLKILK 500


>gi|308185401|ref|YP_003929533.1| rnd superfamily transporter [Pantoea vagans C9-1]
 gi|308055681|gb|ADO07851.1| Putative RND superfamily transporter [Pantoea vagans C9-1]
          Length = 1053

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/682 (10%), Positives = 184/682 (26%), Gaps = 39/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++P   P +                    
Sbjct: 28  RPVFAWVVAILIMLLGALSI-----TLLPVEQYPDVAPPSV---------NISATYTGAS 73

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + L        S     N  +T++F+     +    +V   +Q 
Sbjct: 74  AETLENSVTQVIEQQLTGLDNLLYFTSSSSSQGNVSVTVTFSQGTDPDTAQVQVQNKVQQ 133

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  +  T  +   +++         S++ +    ++    + +  +E   
Sbjct: 134 ALSRLPSEVQQLGVTVTKSQSNFLLVMGLYDTTGKSNSTDIGDWLVSNMQEPLARTEGVG 193

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L       + +S      N        G     D+     
Sbjct: 194 DIQVFGGQ-YAMRIWLDPFKLNAFALQPSDVSAAIRSQNIQVSAGKIGGLPSPDNQQLTA 252

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +             +           
Sbjct: 253 TVRAQSRL-------------QTPQQFRNIIVKSDKSGAIVRVGDVARVELGGESYDMTT 299

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T           R              +      S   
Sbjct: 300 RLNGHPAAGVGVMLAPGANALATATLVKNKVEEYRHSMPEGYEVAYALDSTDFIKISVED 359

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   ++ + ++ T  +L+L G T+   ++  +V
Sbjct: 360 VVITLIEAIALVVVVMYLFLQNIRATLIPALAVPVVLLGTFGVLALCGYTINTLTLFAMV 419

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVL 477
           L IGL VD  I+V E +    + +      + +        A   I        +     
Sbjct: 420 LAIGLLVDDAIVVVENVERIMHDEGLPAREATEKSMKEISGALVAIALVLSAVFLPMAFF 479

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN----PLSRFFL 533
               G   R F++T+  ++  S+  A+++  A+   ++R                     
Sbjct: 480 AGSTGVIYRQFSVTIIAAMTFSVVVALTLTPALCGMLLRPTAPHRKGFFGGFNHFYAATE 539

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 +     R   +          + ++FT      +  +    + + A  P   + 
Sbjct: 540 RQYRHKVVRTLRRPLIMVSLYAAMGVVLFVMFTRLPGSFLPTEDQGSIMLQATLPAGATA 599

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR--VLEMVKKKITEIVPLSTI 651
            R+   + QI D          + +  +        AQ        +K         ++ 
Sbjct: 600 SRTEAVNKQIVDWFLTEEKQNIDVVFTINGFNFSGAAQNAGMAFIKLKNWDQRPGSENSA 659

Query: 652 QNTEIVGPKISRELIRKGIVGV 673
           +            +    I  +
Sbjct: 660 EAIAGRATYALASIRDAQIFAL 681



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 96/253 (37%), Gaps = 6/253 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V +  V       +  D++ +        +  +     +++A   +++   ++  
Sbjct: 275 KSGAIVRVGDVARVELGGESYDMTTRLNGHPAAGVGVMLAPGANALATATLVKNKVEEYR 334

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             +P        +      +  +   ++ +I +   +++ +++  +     L     + +
Sbjct: 335 HSMPEGYEVAYALDSTDFIKISVEDVVITLIEAIALVVVVMYLFLQNIRATLIPALAVPV 394

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T G  AL G   N   + A++  IG  V+D +VV + +     ++   +  R+  +
Sbjct: 395 VLLGTFGVLALCGYTINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMHDEGLPAREATE 452

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+ E  G  V  ++      LPMA + GS       F++ +   +  +   ++ +   +
Sbjct: 453 KSMKEISGALVAIALVLSAVFLPMAFFAGSTGVIYRQFSVTIIAAMTFSVVVALTLTPAL 512

Query: 820 LLFIYDWRAKNAR 832
              +    A + +
Sbjct: 513 CGMLLRPTAPHRK 525



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 78/228 (34%), Gaps = 11/228 (4%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
             ++G  ++ ++ Q   G S                           +   +   +     
Sbjct: 832  RYNGSASYEIQGQNAEGFSSGDAMNTIERLANELPAGTTGAWSGLSLQEKQAGGQSTTLY 891

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             + +++  + +     +   W      +  + L +  T+   AL G+  ++    A+LT 
Sbjct: 892  AISILVVFLCLA---ALYESWTVPFSVLLAVPLGVLGTVLAVALRGLSNDIYFQVALLTT 948

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G +  + +++ +     ++      S       +    L   + TS+A    V+P+AV 
Sbjct: 949  VGLTSKNAILIIEFAEDAVR---RGSSLSAAALLAARTRLRPIMMTSLAFIAGVIPLAVA 1005

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW--RAKNAR 832
               G +   +    +  G +     ++F      + +  +  R +NA+
Sbjct: 1006 TGAGANSRIAIGTGIIGGTLAGTVLALFFVPLFFVLVKHYLTRHRNAK 1053


>gi|304398709|ref|ZP_07380580.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. aB]
 gi|304353656|gb|EFM18032.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. aB]
          Length = 1033

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/682 (10%), Positives = 186/682 (27%), Gaps = 39/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++P   P +                    
Sbjct: 9   RPVFAWVVAILIMLLGALSI-----TLLPVEQYPDVAPPSV---------NISATYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + L        S     N  +T++F+     +    +V   +Q 
Sbjct: 55  AETLENSVTQVIEQQLTGLDNLLYFTSSSSSQGNVSVTVTFSQGTDPDTAQVQVQNKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  +  T  +   +++         S++ +    ++    + +  +E   
Sbjct: 115 ALSRLPSEVQQLGVTVTKSQSNFLLVMGLYDTTGKSNSTDIGDWLVSNMQEPLARTEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L       + +S      N        G     D+     
Sbjct: 175 DIQVFGGQ-YAMRIWLDPFKLNAYALQPSDVSAAIRSQNIQVSAGKIGGLPSPDNQQLTA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +             +           
Sbjct: 234 TVRAQSRL-------------QTPEQFRNIIVKSDKSGAIVRVGDVARVELGGESYDMTT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T           R              +      S   
Sbjct: 281 RLNGHPAAGVGVMLAPGANALATATLVKNKVEEYRHSMPQGYEVAYALDSTDFIKISVED 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   ++ + ++ T  +L+L G T+   ++  +V
Sbjct: 341 VVITLIEAIALVVVVMYLFLQNIRATLIPALAVPVVLLGTFGVLALCGYTINTLTLFAMV 400

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVL 477
           L IGL VD  I+V E +    + +      + +        A   I        +     
Sbjct: 401 LAIGLLVDDAIVVVENVERIMHDEGLPAREATEKSMKEISGALVAIALVLSAVFLPMAFF 460

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F+IT+  ++  S+  A+++  A+   +++     S         F     
Sbjct: 461 AGSTGVIYRQFSITIIAAMTFSVVVALTLTPALCGMLLKPISPHSKGFFGGFNRFYAATE 520

Query: 538 IAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
              +        R   +          + ++FT      +  +    + + A  P   + 
Sbjct: 521 RQYRHKVVSTLRRPLIMVSLYAAMGVVLFVMFTRLPGSFLPTEDQGSIMLQATLPAGATA 580

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR--VLEMVKKKITEIVPLSTI 651
            R+   + QI +          + +  +        AQ        +K         ++ 
Sbjct: 581 SRTEAVNQQIVNWFLTEEKQNVDVIFTINGFNFSGAAQNAGMAFIKLKNWDQRPGSENSA 640

Query: 652 QNTEIVGPKISRELIRKGIVGV 673
           +            +    I  +
Sbjct: 641 EAIAGRATYALASIRDAQIFAL 662



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 97/253 (38%), Gaps = 6/253 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V +  V       +  D++ +        +  +     +++A   +++   ++  
Sbjct: 256 KSGAIVRVGDVARVELGGESYDMTTRLNGHPAAGVGVMLAPGANALATATLVKNKVEEYR 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             +P        +      +  +   ++ +I +   +++ +++  +     L     + +
Sbjct: 316 HSMPQGYEVAYALDSTDFIKISVEDVVITLIEAIALVVVVMYLFLQNIRATLIPALAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T G  AL G   N   + A++  IG  V+D +VV + +     ++   +  R+  +
Sbjct: 376 VLLGTFGVLALCGYTINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMHDEGLPAREATE 433

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+ E  G  V  ++      LPMA + GS       F+I +   +  +   ++ +   +
Sbjct: 434 KSMKEISGALVAIALVLSAVFLPMAFFAGSTGVIYRQFSITIIAAMTFSVVVALTLTPAL 493

Query: 820 LLFIYDWRAKNAR 832
              +    + +++
Sbjct: 494 CGMLLKPISPHSK 506



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/226 (11%), Positives = 76/226 (33%), Gaps = 9/226 (3%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
             ++G   + ++ Q   G S                           +   +   +     
Sbjct: 813  RYNGSAAYEIQGQNAEGFSSGDAMNTIERLANQLPAGTTGAWSGLSLQEKQAGGQSTTLY 872

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             + +++  + +     +   W      +  + L +  T+   AL G+  ++    A+LT 
Sbjct: 873  AISILVVFLCLA---ALYESWSVPFSVLLAVPLGVLGTVLAVALRGLSNDIYFQVALLTT 929

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G +  + +++ +     ++      S      ++    L   + TS+A    V+P+AV 
Sbjct: 930  VGLTSKNAILIIEFAEDAVR---RGSSLSAAALQAARTRLRPIMMTSLAFIAGVIPLAVA 986

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G +   +    +  G +     ++F      + +  +  ++ +
Sbjct: 987  TGAGANSRIAIGTGIIGGTLAGTVLALFFVPLFFVLVKHYLTRHRK 1032


>gi|3004984|gb|AAC25691.1| transmembrane efflux pump protein [Agrobacterium tumefaciens]
          Length = 1046

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 60/588 (10%), Positives = 158/588 (26%), Gaps = 41/588 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L  +     +  + ++PS               G  +V+    
Sbjct: 8   RPIFAWVIAIIIMGLGVLSIM-----RLPISQYPSIA-------------GPSVVIGATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        I   +    +  +TL+F      +    +V  
Sbjct: 50  PGASAETVADTVVQIIEKEMTGLDGLRYIDSSTTSTGRATVTLTFNLGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L    + L  +  +  +         +++     D     AI+ +  +    ++ +   
Sbjct: 110 KLSQAEASLPSEVTRQGVTVEKSTTGFLMVIALISDDGARSAIDLADYLNSYMVEPVSRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L+    +   +       N       FG     +  
Sbjct: 170 KGVGKVEVFGS-EYAMRIWLDPQKLKYYGLSPTTVIHAISAQNAQISAGSFGAMPAPEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                      +   +                     
Sbjct: 229 QLNATVTAQSLL-------------KTPQDFERIVLRADTDGGLVLLRDVARAELGTENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T E      A L A        ++          
Sbjct: 276 EISSFYNGKPSSGVAIQLASGANALETAELVKAKMADLGAFLPAGVSYVIPYDTTPFVSL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+ V+ + +   +  L+   ++ + ++ T  +++ LG ++   ++
Sbjct: 336 SIEAVIHTLIEAIVLVVFVMLIFLHNFRATLIPTLAVPVVLLGTFGIMAALGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDS---NITALIA 473
             +VL IGL VD  I+V E +    R        +    + ++ +  + S      +   
Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERIMRDEHLDPVAATKNRWEKSRARSWASPWWFPPSSCR 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
                   G   + F++T+  ++ +S+  A+    A+   +++     +           
Sbjct: 456 WRFSAVQQGEMYKQFSVTIVAAMALSVLVALIFTPALCATMLKAHDHNAKSGLASRFSNW 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                +    R        +       +  L   G    +  K     
Sbjct: 516 FERNFSWLTTRYGNVVRASAKRPLRMFLVYLLLVGAMVFLYQKTPTSF 563



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 90/814 (11%), Positives = 210/814 (25%), Gaps = 61/814 (7%)

Query: 55   HLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI--QNKITLSFADSRFKENIA 112
             +VL  D D      L +  D  R+ L  E   + S       + + +  A        A
Sbjct: 248  RIVLRADTDG----GLVLLRDVARAELGTENYEISSFYNGKPSSGVAIQLASGANALETA 303

Query: 113  DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
            + V   +  + + L       +   TT           +I+            +I   I+
Sbjct: 304  ELVKAKMADLGAFLPAGVSYVIPYDTTP------FVSLSIEA-----------VIHTLIE 346

Query: 173  QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
             I +    +     +     +P    P  L    G  A + F            +     
Sbjct: 347  AIVLVVFVMLIFLHNFRATLIPTLAVPVVLLGTFGIMAALGFSI-NTLTMLAMVLAIGLL 405

Query: 233  LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
            + D+      VE  +    +    AT N   K+        +    +   +  +    G+
Sbjct: 406  VDDAIVVVENVERIMRDEHLDPVAATKNRWEKSRARSWASPWWFPPSSCRWRFSAVQQGE 465

Query: 293  PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                     V    +           +             + L +               
Sbjct: 466  MYKQFSVTIVAAMALSVLVALIFTPALCATMLKAHDHNAKSGLASRFSNWFERNFSWLTT 525

Query: 353  GADLGSDSIYKGTCAIVAGLVLIVLFMIVLY------------------GKWGLVADFSI 394
                   +  K    +    +L+V  M+ LY                           + 
Sbjct: 526  RYGNVVRASAKRPLRMFLVYLLLVGAMVFLYQKTPTSFLPDEDQGTLMTIIQTPPGSTAQ 585

Query: 395  FLNVILTLALLSLLGATLTLPSIAG-----IVLGIGLAVDSNILVNERIREENRKNQSVF 449
                +L       + A              ++ G G  +    +  +   E   K  S  
Sbjct: 586  NTEAVLGKVENYYMNAEAQNVESVFSVSWFLLAGQGQNMGMMFVKLKDWEERKGKENSAQ 645

Query: 450  CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI--- 506
                  F      I ++ +  L+   V           F           +  A ++   
Sbjct: 646  AIAARAFGPLMGGIKEAIVVPLVPPAVTELGNSNGFTAFLQARSGQSHEQLLEARNMLLG 705

Query: 507  ----VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
                   +M       +  S     +         ++   + +    V  S   +     
Sbjct: 706  LAAQSPKLMAVRPNGVEDASQFELNIDWGKAGAVGLSAADVGSFLTTVWSSSYVNDFLYE 765

Query: 563  LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                     G          +   R  + +    +L ++   +  F      +   +   
Sbjct: 766  GRMKRVYVQGEPLARTGPEDLALWRVPNANGDFVDLSTIASQNWVFGPQQVIRYDALPAM 825

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAML 681
               G +       E + +       L    + +  G  +  +    G + +  ++   M 
Sbjct: 826  SIEGSAAPGFSSGEALAEIEALAAKLPPGFSLQWTGMSLEEKDAGAGALPLYGLALATMF 885

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +   ++ W   +  +  + + I   L    + G    +     +LT++G +  + +++
Sbjct: 886  LCLAALYESWTIPVAVLLAMPVGILGALLGAWIGGQSNGVYFQVGLLTVVGLTGKNGIMI 945

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
             +  R+ M       S  + + ++        + TS+A  + V+P+ +    G     + 
Sbjct: 946  VEFARERMAQL--GESAFEAVCQAAKLRFRPILMTSLAFGLGVIPLVISTGAGAGARQAI 1003

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 FG V     +I       + I    ++ +
Sbjct: 1004 GYATFFGTVTGTLLAIVFVPVFFVLISGIFSRRS 1037


>gi|332308423|ref|YP_004436274.1| protein-export membrane protein SecD [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175752|gb|AEE25006.1| protein-export membrane protein SecD [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 608

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 150/511 (29%), Positives = 267/511 (52%), Gaps = 30/511 (5%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
              QS    +   M  + I LGLDL GG   VLEVD +      +    DE    +  +G
Sbjct: 107 LGSQSAAPTWLQGMGMSPIKLGLDLSGGVLFVLEVDTNKADQERIGNAKDEALQIIHDQG 166

Query: 86  IGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           +   S++     NKI L F   +     A  V   +  +  +L          ++ +++ 
Sbjct: 167 LHGMSVKIADTENKINLHFLSHQ-----AASVKSVVNELQQRLPG----VTYSSSGDRDG 217

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
           ++V S+ +I       + Q++  +R RI+++GI+E+  QR G +RI I+LPG +DP + +
Sbjct: 218 TLVFSEQSITTFHHEIMAQALTTLRGRIEELGITEAVTQRQGQNRIRIELPGVKDPEQAK 277

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           +++G TA + F+++           G++   D +G +  +  K   +G ++     +   
Sbjct: 278 RIIGATASLDFYEMAQ-----SGTVGIKTFTDENGRRLRLAPKPIFTGSNIEN-ATSGRD 331

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQA 311
           +    +V+++ D +G ++  E ++DNIG P+  +       +                Q+
Sbjct: 332 EMGVALVNLALDGIGGKKMSEFSKDNIGNPMVTIFSEYHKNSADEMVKSSKVISVATIQS 391

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
               +  I+   + + A  LA +LRAGSL   + IV++R + A LG +++  G  A+  G
Sbjct: 392 QLGNRFSITNLDSPQAASDLALLLRAGSLDAPITIVQQRTIQASLGQENVSNGIMALAIG 451

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDS 430
           L + +LFM + Y K GL+A+ S+ LN+I  L L++LL    LTLP IAG+VL +G+AVD+
Sbjct: 452 LGITLLFMGLWYRKLGLIANTSLVLNLICLLGLMALLPNVVLTLPGIAGLVLTVGMAVDT 511

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
           N+L+ ERI+EE ++ +S F +++ G+  A++TI D+N+T +I  ++L   G G V+GFA+
Sbjct: 512 NVLIFERIKEERKRGRSNFLAIETGYKEAFATILDANVTTMITALILLSIGYGPVKGFAM 571

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           T+ L IL SMFT + +   +   +     +K
Sbjct: 572 TLSLGILTSMFTGVFVAHVLTALVKPQIPVK 602



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 91/226 (40%), Gaps = 5/226 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    N     +      +    ++ L            Q      +  +   +    TI
Sbjct: 367 SEYHKNSADEMVKSSKVISVATIQSQLGNRFSITNLDSPQAASDLALLLRAGSLDAPITI 426

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +   + +E +  GI+ + I     L+++ + ++    L A T+L+L++   LG  
Sbjct: 427 VQQRTIQASLGQENVSNGIMALAIGLGITLLFMGLWYR-KLGLIANTSLVLNLICLLGLM 485

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           AL   +   L  +A ++  +G +V+  V++++R+++  K      S    I+    E   
Sbjct: 486 ALLPNVVLTLPGIAGLVLTVGMAVDTNVLIFERIKEERK---RGRSNFLAIETGYKEAFA 542

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +  ++   I+ L +   G   +  FA+ ++ GI+ +  + +F+A
Sbjct: 543 TILDANVTTMITALILLSIGYGPVKGFAMTLSLGILTSMFTGVFVA 588


>gi|300858590|ref|YP_003783573.1| protein-export membrane protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686044|gb|ADK28966.1| protein-export membrane protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302330859|gb|ADL21053.1| Protein-export membrane protein secF [Corynebacterium
           pseudotuberculosis 1002]
          Length = 373

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 132/303 (43%), Gaps = 11/303 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           + F+  R      +    +  +  +   G + GIDF GG ++ + A      SV ++  +
Sbjct: 17  LDFVGRRRTWYWTTAAILLVCLVSIALRGFSLGIDFVGGTKINMPAGNLETASVSKTFED 76

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ----NTE 655
           +  +     Q        ++ +  +           + + +                   
Sbjct: 77  ATGVEPKLVQIVGAGDTRILEINSKRLSEEQIGSARQALFEAYKPADASGKQTPDAIGDS 136

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V       + ++ ++ + +  +A+ IYI +R +   A+ AIT L++D     G +AL G
Sbjct: 137 TVSESWGSTITKRMLISMFVFLVAVFIYIAVRLEREMAVAAITALLIDFVAIAGIYALLG 196

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLIDKSINETLGRSV 773
            E +   +  +LT++ +S+ D V+V+D++R+N   Y    S ++ +  + ++N+T+ RS+
Sbjct: 197 FEVSPATIIGLLTVLAFSLYDTVIVFDKVRENTAGYLGNRSRTYAEHANLAVNQTVMRSI 256

Query: 774 YTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            T++ + + +L +      + G   +   A+    G++    SS+F+A PIL+ + +   
Sbjct: 257 STTVISALPILALIVIAVWLLGVGTLKDLALVQLIGVIEGTFSSVFLATPILVSLKNRSK 316

Query: 829 KNA 831
           +  
Sbjct: 317 ETK 319


>gi|227488790|ref|ZP_03919106.1| preprotein translocase subunit SecF [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227091212|gb|EEI26524.1| preprotein translocase subunit SecF [Corynebacterium
           glucuronolyticum ATCC 51867]
          Length = 412

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 138/319 (43%), Gaps = 11/319 (3%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            N      L      I F+  R     I+++        +   G   GIDF+GG ++ + 
Sbjct: 15  TNHSFLTRLYTGEGGIDFVGRRKLWYIITLVVLAVCALGIIFRGFTLGIDFQGGTKMTMP 74

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A      +V R+  E+  +     Q    + + ++ +  +           E +  +   
Sbjct: 75  AANLDTAAVSRTFEEATGVTPEGVQIVGAQDSRILEIASERLSDEQIMSAREALYTEFQP 134

Query: 645 IVPL----STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                           V       +  + IV      + + IYI IRF+   ++ AI  L
Sbjct: 135 KDASGEVTPDAVGDSTVSESWGSTITNRMIVAFGAFLLLIFIYIAIRFERDMSVAAIAAL 194

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFR 758
            +D     G +ALFG+E     V  +LT++ +S+ D VVV+D++++N +   +TT  ++ 
Sbjct: 195 GVDGVFIAGCYALFGMEVTPAVVIGLLTVLAFSLYDTVVVFDKVQENTEGFEHTTRKTYA 254

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSI 813
           +L + ++N+T+ RS+ T++ + + ++ +      + G   +   A+    G++    SS+
Sbjct: 255 ELANLAVNQTVMRSISTTVISALPIIALMIVAVWLMGVGTLKDLAVVQLIGVIEGTFSSV 314

Query: 814 FIAAPILLFIYDWRAKNAR 832
           F+A P+L+ + + + K  +
Sbjct: 315 FLATPLLVSMKNRQKKFKK 333


>gi|222106522|ref|YP_002547313.1| AcrB/AcrD/AcrF family protein [Agrobacterium vitis S4]
 gi|221737701|gb|ACM38597.1| AcrB/AcrD/AcrF family protein [Agrobacterium vitis S4]
          Length = 1066

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 59/544 (10%), Positives = 146/544 (26%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +    +  +P  +P + +                  
Sbjct: 10  RPVFAGVLSVLIVVAGLI-----GMRSLPISEYPDVVPPSIV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVATPLEEQINGVEGMLYMSSQATSDGVMTLTVTFKLGTDPDQAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              ++  + K   + T       +++                   +    D++       
Sbjct: 116 AEPRMPEEVKSLGVTTVKSSPDLMMVVNLISPDNRYDITYLRNYGVLNIKDRLARIAGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +     + ++      N      + G          Q 
Sbjct: 176 QVQIFGSGDYSMRIWIDPQQAAEHGLAASDITTAIRAQNVQAAAGIIGGSPSLPGVDVQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                      I       +         +    +      
Sbjct: 236 NVNAQGRL-------------QTPEDFGNIIVKSGANGQITRLRDVARVELGASDYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L +              +     +        L+          +          S   
Sbjct: 283 LLDSKAAVAIPVFQAPGSNAITISDEVVRTMDELQLAMPEGVKYEIVYDTTKFVRSSIEK 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++   G ++   S+ G+V
Sbjct: 343 VVDTLLEAVALVVLVVILFLQTWRASIIPLIAVPVSIIGTFAVMYAFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLSPRQATYRAMKEVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S +IS   ++++  A+   +++        +     F L     
Sbjct: 463 GLSGQFYRQFALTIAISTVISALNSLTLSPALAALLLKGHHAPKDRLTRGLDFMLGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 GFNR 526



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAIIMIVPMGVLAALTGIWLTGGDNNIFTQIGLIVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TSMA  + V+P+      G  +  +  I +  G+
Sbjct: 960  -LEFEGRTPVQAAIEASRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRAAMGIAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      IF+     + I  
Sbjct: 1019 IGVTVFGIFMTPVFYVLIRK 1038



 Score = 45.5 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---IAVPVSIIGTFAVMYAFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI---E 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R    +++ E  G  +  ++      +P+A      G     FA+ +A   V++A
Sbjct: 425 NGLSPRQATYRAMKEVSGPIIAIALVLVAVFVPLAFISGLSGQFYRQFALTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 LNS 487


>gi|114562158|ref|YP_749671.1| preprotein translocase subunit SecF [Shewanella frigidimarina NCIMB
           400]
 gi|114333451|gb|ABI70833.1| protein-export membrane protein SecF [Shewanella frigidimarina
           NCIMB 400]
          Length = 307

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 74/285 (25%), Positives = 152/285 (53%), Gaps = 6/285 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R+    ISI+  + S+ ++   G N+G+DF GG+   +  +  +  S ++  + +   
Sbjct: 18  KWRYASSLISIVLMLLSLTVIGVKGFNWGLDFTGGVVTEIQVDHRITASEIQPLMTAAYK 77

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            D+S  +      +++R    P ++         + + +  +     + N+ IVGP++ +
Sbjct: 78  QDVSVISASEPGRWVLRYANIPDENQRPE-----LAEVLAPLNTDINVLNSSIVGPQVGQ 132

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL+ +G + ++++ + ++ Y+  RF+W  A GA+  L+ D+   L FFAL  +EFNLT +
Sbjct: 133 ELVEQGGLALLVAMLCIMGYLSFRFEWRLASGALFALVHDVVFVLAFFALSQMEFNLTVL 192

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA++ ++GYS+ND +++ DR+R+ +       +  D+ + +I  T  R++ TS    I+V
Sbjct: 193 AAIMAILGYSLNDSIIIADRIREQLVAKPQ-WNITDINNLAIKSTFSRTMVTSGTTLITV 251

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + + + GG+ +  F+I M  GI+    SS+ I A +  F+     
Sbjct: 252 VALWILGGAPLEGFSIAMFIGILTGTWSSVSIGATLPEFLGLKAE 296


>gi|237668532|ref|ZP_04528516.1| protein-export membrane protein SecF [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237656880|gb|EEP54436.1| protein-export membrane protein SecF [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 289

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/279 (28%), Positives = 150/279 (53%), Gaps = 8/279 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                + IS++  +  +   F  GLN+GIDFKGG Q+ +  N  ++ + V + ++     
Sbjct: 7   KSKIWISISLIIVVIGLGFTFFKGLNFGIDFKGGTQVSIQLNDEINKADVDTIVKGYAAD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
             +  + + E             S     + +         +  + + + E +G  + +E
Sbjct: 67  ASTTISNNNEYEIKSTDLDSDKLSSIMNELKDKY------SLEDTALLSQEEIGASVGKE 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L R  ++ +  + + MLIY+ IRF++ F + A+   + DI  T+G +A+FGI  N   +A
Sbjct: 121 LTRNSLLALFAAGVVMLIYVAIRFEFTFGVAALVATLHDILMTIGVYAIFGIPVNTPFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ND +V++DR+R+N K    + ++ ++ D S+ ETL RSVYTS++   +++
Sbjct: 181 AMLTIVGYSMNDTIVIFDRIRENTKKMRRANTY-EIADTSLTETLARSVYTSLSTLATIV 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            + +     +  F IP+  GI+  A SSIFIA+P+ + +
Sbjct: 240 AINIL-VPSVREFTIPLIVGIICGAYSSIFIASPVYVLL 277


>gi|86158961|ref|YP_465746.1| protein translocase subunit secF [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775472|gb|ABC82309.1| protein translocase subunit secF [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 402

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/291 (26%), Positives = 134/291 (46%), Gaps = 7/291 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I+  R            +      L   G  +  +F   I                
Sbjct: 94  HTFLIRVERISLLTEADVARVADAVKAKLPVAGFAFNPEFGDKIDFQFSGAVDAAAVRAA 153

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                +++ D+  +           +  Q      Q  + + +            ++  E
Sbjct: 154 VEAAGVKVRDVREEQGLTAGTRSYAVITQGIQENVQAGLKDHL------GDAQPNVRRVE 207

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP   REL  +G+  ++ +   +++YI +RF + F+ G +  ++ D   T+G+F + G
Sbjct: 208 YVGPAAGRELQAQGLKAILYAIGLIVVYIGLRFDFRFSPGVVIAMLHDAIMTMGYFTITG 267

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            EFNLT++A +LT++GYSVND VV+YDR+R+N        S  D+++ SINE LGR+  T
Sbjct: 268 REFNLTSIAVILTVVGYSVNDTVVIYDRIRENQAKL-RGRSLSDIVNLSINEVLGRTFLT 326

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           S A  +S++ + V+G   I  F++ M FGI+    S+ FIAAP+ +++ + 
Sbjct: 327 SFATALSLIGLLVYGVGTIFDFSMAMLFGIISGTYSTWFIAAPMTIWLEER 377


>gi|124514967|gb|EAY56478.1| Hydrophobe/amphiphile efflux family protein [Leptospirillum
           rubarum]
          Length = 1042

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/686 (11%), Positives = 192/686 (27%), Gaps = 41/686 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   +  ++  ++   G++           + +FP  +P               + +  
Sbjct: 6   LKRPIFAGVVAIIMVLTGMIA-----FKLLPVSQFPRIVPP-------------QVTVTA 47

Query: 61  DEDD----FVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKV 115
           +        V   +    +E+ S +     +   S     + IT++F      +  A  V
Sbjct: 48  NYPGASAQVVADTVTTPLEEVISGVPGMAYMSSNSSNDGSSTITITFKVGYPIDIAAVDV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +   + +L     +  +V   +    +++            I  S     Q +D + 
Sbjct: 108 QNRISQASPQLPAIVNQGGIVIQKKNPNFVLIVNLISPDGSIDPITMSNYAYLQIVDPLK 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +    +P +L +L  T   +       N        G      
Sbjct: 168 RLPGVSDAQIFGERRYSMRIWLNPDKLSRLGVTAVDVQNAIAEQNIQVAAGKIGEAPAPR 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
               +Y V     +S                   + +                 I     
Sbjct: 228 GTMFEYQVNALGRLS------------TPEEFGNIIVKAGTTSNAAVRLRDVARIRLGSL 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +                +     +        L           ++       
Sbjct: 276 QYTSAAHMDKNKTIVIGIFQAPGSNALDLDKAVKDKMKELSKRFPKGMTYSIKYDTTMFV 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV+IV+F+ +   +  ++A  +I +++I TLA++ ++G +L   
Sbjct: 336 SASMHEVVFTLLEALILVMIVVFLFLQSWRTMVIAGIAIPVSLIGTLAVMKIVGFSLNTV 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+ G+VL IGL VD  I+V E +  +         ++ +        I  ++       V
Sbjct: 396 SLLGMVLAIGLVVDDAIVVVENVERQLEHGLPPMEAVRIAMGEVTGPIIATSAVLGAVFV 455

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F     G   R FA+T+ +S+ +S F ++++  A+  +++RY+    I +       
Sbjct: 456 PVGFLPGVTGELYRQFALTIAISVGLSAFNSLTLTPALSGWLLRYRGPSEIYVFRKFNEI 515

Query: 533 LIPDCIAIQFMRARFW---GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                     M  R        + +      +       + +            +  +  
Sbjct: 516 FNTVRDGYARMIRRAIEAKWYAMGLFLGGIIMTYGLFVRVPHTFLPVEDQGYFFVIIQLP 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D + +       +    +     G  + +    +       Q+             V   
Sbjct: 576 DGASLERTENVAKTVRDTLLATPGIDHVVSISGFNFLTFANQSNSAAEFAILKPWEVRGR 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGVII 675
               + IV     + L+    + +  
Sbjct: 636 DRTASMIVNEVRPKLLMIPAGLALAF 661



 Score = 88.6 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 83/203 (40%), Gaps = 9/203 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A    ++ + K+  + +  S   +T +       E++   +  +I+  I + +++   
Sbjct: 305 DKAVKDKMKELSKRFPKGMTYSIKYDTTMFVSASMHEVVFTLLEALILVMIVVFLFLQ-- 362

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   + A   + + +  TL    + G   N  ++  ++  IG  V+D +VV + +   
Sbjct: 363 -SWRTMVIAGIAIPVSLIGTLAVMKIVGFSLNTVSLLGMVLAIGLVVDDAIVVVENV--- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +     +   + +  ++ E  G  + TS       +P+       G +   FA+ +A  
Sbjct: 419 ERQLEHGLPPMEAVRIAMGEVTGPIIATSAVLGAVFVPVGFLPGVTGELYRQFALTIAIS 478

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
           + ++A +S+ +   +  ++  +R
Sbjct: 479 VGLSAFNSLTLTPALSGWLLRYR 501



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 60/162 (37%), Gaps = 7/162 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS + + +++   ++ W      I  + L I   +    L   + ++ +    + LIG 
Sbjct: 875  GISLVFVFLFLAALYESWSMPFMVILAVPLAIFGAIFATWLRRKQLDVYSQIGFVMLIGL 934

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            S  + +++ +  R   +L        +   ++    L   + T+ A  + V+P+ V    
Sbjct: 935  SAKNAILIVEFAR---RLREKGEGIVEAAMEAGRLRLRPILMTAFAFILGVIPLMVATGA 991

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G +   S    +  G++ A   S+         I  +R    
Sbjct: 992  GAASRQSIGTTVFGGMLAATILSLGFVPIFYAVIEKFREGRK 1033


>gi|212212457|ref|YP_002303393.1| protein translocase subunit [Coxiella burnetii CbuG_Q212]
 gi|212010867|gb|ACJ18248.1| protein translocase subunit [Coxiella burnetii CbuG_Q212]
          Length = 622

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 147/531 (27%), Positives = 255/531 (48%), Gaps = 39/531 (7%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
                N  P++    +  A+    + LGLDLRGG H +L+VD    V          + +
Sbjct: 97  YSVALNLAPRTPR--WLQAIGAKPMRLGLDLRGGIHFLLDVDVGAMVKAQETGDLHTMST 154

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            L++  I    M   QN + + F +   ++     +                       T
Sbjct: 155 ALREARIRYTEMSSDQNGVMIHFREQAARDQARTLLEKQFPDYR------------FEAT 202

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              +   +S   + Q+  +A++Q   I+R R++++G++E  IQ+ G  +I + LPG QD 
Sbjct: 203 ASSLRGTISITALHQIQQNAVDQITTILRNRVNELGVAEPVIQQQGESQISVDLPGIQDT 262

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS-----DGNQYLVEDKVEISGIHL 254
           +R + ++G  A +    V   +  +           S     +    L++ +V + G  +
Sbjct: 263 ARAKDIIGKVATIRLQLVDVEHDAETASSTGTVPFGSKLYTFEKQPVLLKQQVVLKGTSI 322

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP-------------------LA 295
               ++   +  +P V +         F  +T +N+GKP                   + 
Sbjct: 323 -INASSVIGEDGRPAVRVRVSGSDVPSFNRITGENVGKPLAVVYVETQTTRHLVDGKVVT 381

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +      Q       QI+   T++    LA +LR+G+ P+ ++ V+ER VG  
Sbjct: 382 QHCQIERIINIATIQTALGNDFQITNLSTMDYGKNLALLLRSGAYPVPVDFVQERVVGPS 441

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG ++I+ G  +   G +L+++FM   Y  +G++AD ++ LN++  +A+LS+LGATLTLP
Sbjct: 442 LGQENIHMGVLSTEIGALLVIVFMAFYYRLFGVIADIALALNIVFIVAVLSILGATLTLP 501

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL +G+AVD+N+L+NERIREE R   S   S+  G+ RA++TI D+N+T LI  +
Sbjct: 502 GIAGIVLTVGMAVDANVLINERIREELRNGMSPQASIKAGYDRAFATIVDANVTTLIVMI 561

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +LF  G G V+GFA+T  + +L SM TAI   RA++  +   ++   + I 
Sbjct: 562 ILFALGSGPVQGFAVTTTIGLLSSMVTAIFFTRAVVNLVYGRRRASRLSIG 612



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 82/179 (45%), Gaps = 4/179 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                 +VGP + +E I  G++   I A+ +++++   ++  F + A   L L+I   + 
Sbjct: 431 DFVQERVVGPSLGQENIHMGVLSTEIGALLVIVFMAFYYRL-FGVIADIALALNIVFIVA 489

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             ++ G    L  +A ++  +G +V+  V++ +R+R+ ++     +S +  I    +   
Sbjct: 490 VLSILGATLTLPGIAGIVLTVGMAVDANVLINERIREELR---NGMSPQASIKAGYDRAF 546

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              V  ++   I ++ +   G   +  FA+    G++ +  ++IF    ++  +Y  R 
Sbjct: 547 ATIVDANVTTLIVMIILFALGSGPVQGFAVTTTIGLLSSMVTAIFFTRAVVNLVYGRRR 605



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 40/118 (33%), Gaps = 27/118 (22%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  IL +++  I L+ ALPN   +                              + 
Sbjct: 3   RYPLWRYILLAVLIIISLIYALPNLYGEDPA---------------------------IQ 35

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                +  ++   ++++S L  + I   S+R + N + + F  +  +    D +   +
Sbjct: 36  ISAKNSAPIEAVEEKIKSTLNAQHISYLSVRPVDNTVLVRFPSTEDQLKAQDVIQAVV 93


>gi|294626584|ref|ZP_06705182.1| RND superfamily protein MexF [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599151|gb|EFF43290.1| RND superfamily protein MexF [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1058

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 155/547 (28%), Gaps = 35/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +P   +  +P  +P +              V     
Sbjct: 10  RPIFAAVLSIIIFAAGLIA-----MPLLPISEYPEVVPPSVQ---------VRAVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVVTVTFKPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +   +++  S     +  D++     
Sbjct: 114 SQAQARLPEDVRRQGVTTQKQSPTLTMVVHLTSPKGKYNSLYLSNYATLKVKDELSRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P ++     T + +       N        G   + +    
Sbjct: 174 VGQIQIFGAGDYAMRIWLNPDKVAARGLTASDVIAAIREQNVQVSAGQLGAEPMPNKSDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +             P   +    +                 +         
Sbjct: 234 LLSINAQGRL-------------PPEEEFGNIVIRSGNSGEIVRLSDVARLELGAGNYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +      A L                      S 
Sbjct: 281 RSQLDNQNAVGMGVFQSPGANAIELSDAVRAKMAELEKQFPQDMAWSAAYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   S+ G
Sbjct: 341 SAVVHTLLEAVLLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++         + L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAMLLKSHDAPKDGPSRLIDRLFGWL 520

Query: 537 CIAIQFM 543
                  
Sbjct: 521 FRPFNRF 527



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L   + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTLLSALFGVWLTNGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+      G  V     I +  G+
Sbjct: 958  -LEMHGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVFGHGAGAEVRSVTGITVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      +F+     + +  W  +  
Sbjct: 1017 LGVTLFGLFLTPVFYVALRKWVTRRG 1042



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 56/143 (39%), Gaps = 14/143 (9%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 425 E---GLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASS----SIFIAAPILLFIYD 825
           ++       S+ ++  +   +  
Sbjct: 478 ISTVISAINSLTLSPALAAMLLK 500


>gi|57241993|ref|ZP_00369933.1| protein-export membrane protein SecD [Campylobacter upsaliensis
           RM3195]
 gi|57017185|gb|EAL53966.1| protein-export membrane protein SecD [Campylobacter upsaliensis
           RM3195]
          Length = 527

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 158/542 (29%), Positives = 283/542 (52%), Gaps = 35/542 (6%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           + ++++  +   G+  +LP+FL               +I+LGLDL+GG +++L VD  + 
Sbjct: 8   YRLLVFIAVFIFGIAFSLPSFL---------QFERGAKINLGLDLQGGLYMLLGVDNKEA 58

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   ++  +  L   + KE I +  +      +  S  D      +   +          
Sbjct: 59  VKSKMKSVASSLHYSINKENILIDQLIVKDEDLEFSLLDEGDMTKMQALLNEI------- 111

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                 K L V        +  +Q  +  + + A+ Q++E IR R+D+ G++E T+ + G
Sbjct: 112 ------KGLNVQKDNLHFVVSFTQEELKNIENFALLQAVETIRNRLDEFGLAEPTVAKQG 165

Query: 186 SHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------- 235
             +IL++L G +   D  R ++ +   A +   +V  +   K                  
Sbjct: 166 EDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDESKMSKASAMSEAEAASYGLVLMS 225

Query: 236 ---SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
              ++  +Y +++   + G  L  A   F   +  PV++ + +  GA++F + T  N+GK
Sbjct: 226 DSRNENLKYTLKNIPILDGSMLTDARVGFSDTSTYPVINFTLNSEGAKKFADYTGANVGK 285

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + ++E+R++
Sbjct: 286 RLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVKLLEQRSI 345

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG+DSI     A++   V I++FM++ YG  G+ A+ ++ +NV++ +A++++ GATL
Sbjct: 346 GPSLGADSIKMSMIALIGASVFIIVFMMLYYGVAGVFANIAMLVNVLVVVAVMAMFGATL 405

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP +AG+VL +G+AVD+N+++NERIRE  R    +  S++ G+  A S I D+NIT+L+
Sbjct: 406 TLPGMAGLVLTVGMAVDANVIINERIRELLRDGAKIRASVEQGYKNAMSAIIDANITSLV 465

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + +   +  +          
Sbjct: 466 TSVALYAYGTGAVKGFAVTLGIGIVVSMITAIWGTHGMFDYFMHKIEKSNNTRFWFGYKR 525

Query: 533 LI 534
            I
Sbjct: 526 KI 527



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ +++++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIIVFMMLYYGV-AGVFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++        R  +++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGAK---IRASVEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             ++ + ++ + +  +G   +  FA+ +  GIVV+  ++I
Sbjct: 458 DANITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAI 497


>gi|325277744|ref|ZP_08143308.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Pseudomonas sp. TJI-51]
 gi|324097118|gb|EGB95400.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Pseudomonas sp. TJI-51]
          Length = 1041

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/687 (12%), Positives = 182/687 (26%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P+  P               + +    
Sbjct: 8   RPVFAWVVALFILLAGALAI-----PQLPVAQYPNVAPP-------------QVEIYAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  + +     +   L                   IT +FA     +     V   
Sbjct: 50  PGASAATMDESVVSLIEQELNGADNLLYFESQSSLGSATITATFAPGTHPDLAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V S+L     +  L         ++L+              S  + R  +D+I   +
Sbjct: 110 LKVVESRLPRPVTQQGLQVEKVSTGFLLLATLTSTDGKLDETALSDILARNVMDEIRRLK 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +L     T   ++      N        G    R +  
Sbjct: 170 GVGKAQLYGS-ERAMRIWIDPRKLVGFNLTPNDVADAIAGQNAQVAPGSIGDLPSRSTQE 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K ++S                     +                 +        
Sbjct: 229 ITANVVVKGQLS-------------TPEAFAAIVLRANPDGSVVTLGDVARVEVGAQEYQ 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G  L                +   T          L           +          S
Sbjct: 276 YGTRLNGKPATAFSVQLAPGANAMQTATLVRAKLQDLARYFPEGVRYDIPYDTSPFVKVS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV  V+F+ +   ++ L+    + + ++ T A++  LG ++ + ++ 
Sbjct: 336 IEQVISTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALMGTFAVMLALGFSINVLTLF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +      +     S+    I    +  +   + +
Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMAEEGLPPRQATRKAMSQISGAIIGITLVLVAVFLPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFF 532
            F  G      + F++ M +SIL S F A+S+  A+   +++      +         F 
Sbjct: 456 AFMQGSVGVIYQQFSVAMAVSILFSAFLALSLTPALCATLLKPVAKGEQHARKGFFGWFN 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG-----IDFKGGIQLGVLANR 587
              + ++  + R     +  S  + +    LL   G                   +   +
Sbjct: 516 RRFEGMSNGYQRWVMQALQRSGRYLLLYALLLGVLGYGLSQLPTAFLPTEDQGYTITDIQ 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +      +     +       G  N  + L +    S     +     K  +E   
Sbjct: 576 LPPGASRMRTEQVAAQIEAHNSEEPGVGNTTLILGFSFSGSGQNAALAFTTLKDWSERGA 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             T Q       +   +L       V+
Sbjct: 636 EHTAQAIAERANQAFTQLKDAVAYAVL 662



 Score = 81.7 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 81/241 (33%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q      +                 +++    ++    + +    P 
Sbjct: 259 VTLGDVARVEVGAQEYQYGTRLNGKPATAFSVQLAPGANAMQTATLVRAKLQDLARYFPE 318

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +         +  I + I  +  + + +   +++  +   + L     + + +  T
Sbjct: 319 GVRYDIPYDTSPFVKVSIEQVISTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALMGT 378

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  V+D +VV + +     +    +  R    K++++
Sbjct: 379 FAVMLALGFSINVLTLFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPRQATRKAMSQ 436

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      LPMA   G   VI   F++ MA  I+ +A  ++ +   +   + 
Sbjct: 437 ISGAIIGITLVLVAVFLPMAFMQGSVGVIYQQFSVAMAVSILFSAFLALSLTPALCATLL 496

Query: 825 D 825
            
Sbjct: 497 K 497



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W      +  + L +   +    L G+  ++     +
Sbjct: 866  QAPMLMALSLLVVFLCLAALYESWSIPTAVLLVVPLGVLGAVLAVTLRGMPNDVFFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG S  + +++ +  +    L    +   D   ++    L   V TS+A  + V+P+
Sbjct: 926  ITLIGLSAKNAILIIEFAK---HLVDQGVDAADAAVQAARLRLRPIVMTSLAFILGVVPL 982

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSS 812
            A+  G+   S    +  G++    S+
Sbjct: 983  AIASGASSAS-QQAIGTGVIGGMLSA 1007


>gi|268680241|ref|YP_003304672.1| protein-export membrane protein SecD [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268618272|gb|ACZ12637.1| protein-export membrane protein SecD [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 522

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 161/543 (29%), Positives = 292/543 (53%), Gaps = 36/543 (6%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           + ++++ +    G+ +++P FL               +ISLGLDL+GG H++L V  ++ 
Sbjct: 3   YRLVIFVIAIIFGVGMSMPTFLQSEKGA---------KISLGLDLQGGLHMLLGVKTEEA 53

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +   ++  +  ++ F +   I +  ++   + ++ +    + +E   D++   + G+ S+
Sbjct: 54  IKSKIKSIASSIKFFSQSNDIIIDDLKINGDVLSFTL-LDKDEEKKLDEMIKTISGLQSE 112

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                        T    ++ L     +    +AI Q++E IR R+DQ G++E  + + G
Sbjct: 113 ------------KTGLAYTLSLEDKEKELTKEYAISQAIETIRNRLDQFGLAEPNVAKQG 160

Query: 186 SHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLP--------NNSKKGFMFGVRFLR 234
           + +IL++LPG +   D  R R+L+   A +    V           +  +   +G   L 
Sbjct: 161 NDKILVELPGIKNAEDEQRARELIAKAAHLQLMAVDEKKQDRANTMSPTEAAQYGDVILS 220

Query: 235 D--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
           D  SD  +Y++++   + G  L  A   F     +PV++ + +  GA+ F + T  NIG 
Sbjct: 221 DAKSDTIRYVLKEIPILDGSMLTDAKVGFSDMK-QPVINFTLNSEGAKIFGDFTASNIGN 279

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            LA+VLD +V +AP I + I  G  QISG F+++ A  +A  LR+G+L   + ++E+R+V
Sbjct: 280 RLAIVLDNKVYSAPNIRERIGGGSGQISGGFSVKEAHDVAIALRSGALLAPVTLLEKRSV 339

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG+DSI   + A+++G  LIV F+I+ Y   G+ A  ++ +N IL +A+++L GATL
Sbjct: 340 GPSLGADSIQASSLALISGFFLIVAFLIMYYHMAGVFASIALLVNFILLIAIMALFGATL 399

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP +AGIVL +G+AVD+N+++NERIRE  R+  ++  +++ G+  A S I D N+T  +
Sbjct: 400 TLPGMAGIVLSLGMAVDANVIINERIRELLRQGIAIRQAVEKGYENAMSAIVDGNLTLAV 459

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           ++++L+ +G G ++GFAI+M +  LISM TAI     M   ++ Y + K           
Sbjct: 460 SSIILYVYGTGPIKGFAISMLIGNLISMLTAILGTHGMYEALMSYIEKKHSINFWFGMKK 519

Query: 533 LIP 535
              
Sbjct: 520 RGH 522



 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 80/175 (45%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I+   + +I     ++ ++ + +     + A   L+++    +   ALFG
Sbjct: 338 SVGPSLGADSIQASSLALISGFFLIVAFLIMYYHM-AGVFASIALLVNFILLIAIMALFG 396

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++ +R+R+ ++     I+ R  ++K     +   V  
Sbjct: 397 ATLTLPGMAGIVLSLGMAVDANVIINERIRELLRQ---GIAIRQAVEKGYENAMSAIVDG 453

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++   +S + + V+G   I  FAI M  G +++  ++I     +   +  +  K 
Sbjct: 454 NLTLAVSSIILYVYGTGPIKGFAISMLIGNLISMLTAILGTHGMYEALMSYIEKK 508


>gi|127514724|ref|YP_001095921.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           loihica PV-4]
 gi|126640019|gb|ABO25662.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella loihica PV-4]
          Length = 1042

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 83/691 (12%), Positives = 204/691 (29%), Gaps = 44/691 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   GLL        +  + +FPS +P               + +    
Sbjct: 8   RPKFAIVLSIVLTLAGLLSLA-----RMPVSQFPSIVPP-------------SIEVFAVF 49

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQNKIT---LSFADSRFKENIADKVTL 117
               +  ++      +   +   E +     +   +      ++FA     +     V  
Sbjct: 50  PGADHNTIRNTVASVIEQEINGVEDMIYIESKSNNDNTYLAYVTFAIGTDPDKAQVLVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    +KL  + K+  +         ++             +  S        D +   
Sbjct: 110 RVNKAMAKLPEEVKRQGVTVEKVANSILMTVNTYSPNGSHDNLYLSNYASLNIKDALLRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    +P ++     T   ++      N +      G R    + 
Sbjct: 170 KGVGKVQVIGEQNYSMRVWLNPEKMAAKAITANDVAAAISAQNTTVAAGKLGERPSSGNQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY ++ K  +  +              +    I   +  A          +       
Sbjct: 230 VFQYTIQTKGRLVDVE-------------EFENIILRADNQAGFITLKDVARVELAAEQY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +     E        L         +++   +      
Sbjct: 277 SAMATYGKNESPILAIYQAPGANALEVAEGVRAEMERLSQRFPADMEHVISYDSTTFIEV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I  GLV++V F+ +   +  L+   +I +++I T  +++ +G  +   S+
Sbjct: 337 SMDEVFETLYIAIGLVVVVTFLFLQSWRATLIPSIAIPVSLIGTFVVMAAMGIDINTISM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L IG+ VD+ I+V E +     +       +         + +  S +  L     
Sbjct: 397 FGLILAIGVVVDAAIVVIENVERLMSEEHLDSKAATSKAMKEVTAPLIASALVLLAVFGP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLS 529
           + F     G   + F +T+ +S +IS   A+++  A+   ++R++  K+       N   
Sbjct: 457 VSFAPGLVGQMYQQFGVTISVSTVISTVVALTLTPALCAALMRHEAPKTRGPLAWFNQFI 516

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                    ++ F   R    G+ +   + +I LL  +     I  +      V  N P 
Sbjct: 517 NRLTNGYVSSVGFFGKRLMLSGVLLALLMGAIMLLGDNMPKGFIPAEDQGSFMVDMNLPE 576

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             ++ R++    ++          +     +       + +    + +V          +
Sbjct: 577 ASALDRTDKMVDEMISEVSALEGVKHVVAAKGYSLLKGASSSNSGMMIVVLDDWSERQTA 636

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                 +V    +     K + G+  S  A+
Sbjct: 637 ETSEFALVAQVQAIIDQNKDVTGMAFSMPAI 667



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 78/242 (32%), Gaps = 14/242 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +  + L   D + +        ++ +      S      +E +                 
Sbjct: 800  ATYKPLVGSDNTARYNLYNTAQVIAIPADGYSSGEAIAAMEQIADTSLPQGYAYEWTGMT 859

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                +            ++ +   +  Y+++      W   L  I  +   +   LGF A
Sbjct: 860  YQELQAGDSA------PILFALALLFTYLFLVAQYESWMIPLAIILCVPTALFGALGFTA 913

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G   NL     ++ LIG +  + +++ +  +  +      +S  D   ++I   L   
Sbjct: 914  LAGGSINLYTQVGLVLLIGMASRNAILIVEFAK--VLREEKGLSIMDAAKQAIALRLRAV 971

Query: 773  VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + T+ +  + V+P+ +    G +   +  I    G+++A      +     + +   R  
Sbjct: 972  LMTAFSFILGVVPLVIASGAGSASRNALGIASFGGMLIATVIGCLLVPICFIALQRLREL 1031

Query: 830  NA 831
              
Sbjct: 1032 RR 1033



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/207 (10%), Positives = 71/207 (34%), Gaps = 8/207 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 +E + ++    +      ++         E+     + + +  +   +++    
Sbjct: 305 EGVRAEMERLSQRFPADMEHVISYDSTTFIEVSMDEVFETLYIAIGLVVVVTFLFLQ--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +  T    A  GI+ N  ++  ++  IG  V+  +VV + +    
Sbjct: 362 SWRATLIPSIAIPVSLIGTFVVMAAMGIDINTISMFGLILAIGVVVDAAIVVIENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +  +    K++ E     + +++       P++      G +   F + ++   
Sbjct: 420 LMSEEHLDSKAATSKAMKEVTAPLIASALVLLAVFGPVSFAPGLVGQMYQQFGVTISVST 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           V++   ++ +   +   +    A   R
Sbjct: 480 VISTVVALTLTPALCAALMRHEAPKTR 506


>gi|304309952|ref|YP_003809550.1| Acriflavine resistance protein B [gamma proteobacterium HdN1]
 gi|301795685|emb|CBL43884.1| Acriflavine resistance protein B [gamma proteobacterium HdN1]
          Length = 1041

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/584 (12%), Positives = 162/584 (27%), Gaps = 38/584 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  +     Q  ++R+P+  P +                    
Sbjct: 8   RPVFAWVIAIIIMLVGGLSIV-----QLAVERYPTIAPPSVT---------VRATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L        S        ITL+F++    +    +V   LQ 
Sbjct: 54  AKVVEDSVTQIIEQNMKGLDGLIYMSASSESTGSASITLTFSNETDPDTAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  +  +   ++++            + S  +    +D +       
Sbjct: 114 AMPLLPQEVQRQGVNVSKARTGFLMVAGFVSKDGSMTRDDISDYVTANLVDPLSRVAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T + ++      N        G     D      
Sbjct: 174 NVQVFGGQ-YAMRIWLDPNKLDTYRLTPSDVAAAIQSQNQQVSLGQLGGTPAIDGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I    +            +           
Sbjct: 233 TITAQSRL-------------QTPEQFRAVIVRSNLDGSALKLGDIARVELGAETYEFIS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +        S     +   T          L+A        +V          S   
Sbjct: 280 RYNSAPATGVAISLATGANALNTAAAVEERLDELQAFFPAGLEVVVPFDTTPFVKVSIEG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+ + +   +  ++   ++ + ++ T  +L+  G ++ + ++  +V
Sbjct: 340 VVKTLFEAIVLVFLVMLLFLQNLRATIIPTLAVPVVLLGTFGVLAATGFSINMLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    R    S   +     S+    +    +      V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERIMRDEGLSPREATRKSMSQITGALVGIGLVLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+IT+  ++ +S+  AI    A+   +     +K I              
Sbjct: 460 SGSTGIIYRQFSITIVSAMALSVIVAIVFTPALCATL-----LKPIKAGEDHGTKGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
               F RA              S+  +       G+      ++
Sbjct: 515 FNRGFERASGAYQRGVNGIIRRSVRFMLLFFALCGLAVFLFTRV 558



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 89/268 (33%), Gaps = 13/268 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G   +       V ++   +         +   N         +       
Sbjct: 776  PFRMVPEDFGHWSVRNAKGEMVPVNSFTTARWEYGSPRLERYNGVPAMEINGQGAEGISS 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             VA   + ++V +    I    T  + +         ++        +S + + + +   
Sbjct: 836  GVAMAEIEKLVSQLPKGIGMEWTALSYQERSAGSQTPMLY------ALSLLVVFLCLAAL 889

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      +    L I  T+   +L G+E ++    A+LT +G +  + +++ +  + 
Sbjct: 890  YESWTVPTAVLLVAPLGILGTIAAASLRGMERDVYFQVAMLTTVGLTSKNAILIVEFAKA 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
            N     + +   +    ++ + L   + TS+A  + VLP+A+    G     +    +  
Sbjct: 950  NF---ESGMELLEATFAAVRDRLRPIIMTSLAFGLGVLPLAIATGAGSGAQVAIGTGVLG 1006

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++V     IF      + +     +  
Sbjct: 1007 GMLVGTLLGIFFIPLFFVVVQRLFGRRN 1034



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +     + + +  T G  A  G   N+  + A++  IG  V+D +VV + +     
Sbjct: 362 LRATIIPTLAVPVVLLGTFGVLAATGFSINMLTMFAMVLAIGLLVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S R+   KS+++  G  V   +      +PMA   GS       F+I +   + 
Sbjct: 420 MRDEGLSPREATRKSMSQITGALVGIGLVLSAVFVPMAFMSGSTGIIYRQFSITIVSAMA 479

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   +I     +   +  
Sbjct: 480 LSVIVAIVFTPALCATLLK 498


>gi|294506718|ref|YP_003570776.1| Multidrug resistance protein containing Acriflavin resistance
           domain [Salinibacter ruber M8]
 gi|294343046|emb|CBH23824.1| Multidrug resistance protein containing Acriflavin resistance
           domain [Salinibacter ruber M8]
          Length = 1048

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 70/664 (10%), Positives = 184/664 (27%), Gaps = 43/664 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   +I   G +           +  +P+  P                     
Sbjct: 9   RRPVLSTVFALLIMIFGAV-----GFYFLGVREYPAVDPPII---------SVSTQYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D ++  +    +E  + +          R+ Q+ +T+ F      E  A+ V   +  
Sbjct: 55  NADVIDSQITEPLEEQINGIDGIRTIESVSREGQSTVTVEFDLGADLERAANDVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D +   +  +      IV      +      +E +    ++  +++   E   
Sbjct: 115 AQQQLPPDAEPPSVSKSDASAPPIVFLNIESE--TRSLMELTEIADKRFKERLQTIEGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +  E DP +L     T   +       N            +  +   + 
Sbjct: 173 RVDIWGEKTYSMRLELDPQKLAAYDLTPLDVRQALDRSNVELPSGRIEGETIELTVRTKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +       +                     
Sbjct: 233 RLETVED-------------------FNSLLLKQSPDGQTVRLEDVGKADIAPLNERTLL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   +       +    ++        ++A         +   N      S S 
Sbjct: 274 QRDNVPMVGVVLRPLPGANYIDIVDEFYRRVDDIKAELPSDLELGIGFDNTEPIRDSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++++F+ +   +  ++    + + +  +  ++  +G ++ + ++  +V
Sbjct: 334 VQQTIFIAFLLVVLIIFLFLRDWRSTIIPLIVVPIALTGSFFVMYAMGFSINVLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I  +  + +    +   G    +  +  ++++ +I    + F G
Sbjct: 394 LAIGLVVDDAIVVLENIYAKIEEGKDTMVAGLEGTREIFFAVVATSVSLVIIFAPIIFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F + +  ++  S F A+++   +   +++ +  K          F      
Sbjct: 454 GLTGQLFQEFGMVIAGAVAFSSFVALTLTPMLSTRLLKQRDEKPWIYRKTEPVFESLTDA 513

Query: 539 AIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             +    FM  R+    I     +  I              +    + + A      +  
Sbjct: 514 YRRSLEAFMEYRWAAFVIMAGCIVV-ITTFHFTLPQELAPLEDRSLVRMNATAREGATYD 572

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +    ++ +   +    E          PG   A +     +  ++         Q  
Sbjct: 573 YMSGYVDKMYEALDETVPDEHQRSTISVTSPGFGAASSVNSAFMFTRLVPPGERDVSQMQ 632

Query: 655 EIVG 658
               
Sbjct: 633 YADS 636



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 86/232 (37%), Gaps = 8/232 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             NL S+       Q F   +     +  +P         +E + +   +++  +      
Sbjct: 786  DNLVSVSEQATPPQIFRFNRYMSATVSARPAPGNTIEDGIEAMDRVADDVLGPAFSTTLT 845

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                        + +    ++ + + + +  +F+ +   L  + T+ L +   + F   F
Sbjct: 846  GQSRDFQET-SNQLLYVFGLALVLIYLVLAAQFESFRDPLVILFTVPLALAGAMLFLWYF 904

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                N+ +   ++ LIG    + +++ +      +     +S R+ I+++        + 
Sbjct: 905  NQTINIFSQIGMVMLIGLVAKNGILIVEFAN---QRKAAGLSIREAIEEAAAVRFRPILM 961

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            T+++  + VLP+A+    G        + +  G++V    S+++      ++
Sbjct: 962  TALSTILGVLPIALALGAGAQSRVPMGVAVIGGLLVGTVLSLYVIPATYTYL 1013



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 72/199 (36%), Gaps = 9/199 (4%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           ++ +K ++   + L    +          E+ +   +  ++  + + +++     W   +
Sbjct: 304 VDDIKAELPSDLELGIGFDNTEPIRDSISEVQQTIFIAFLLVVLIIFLFL---RDWRSTI 360

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             +  + + +T +       G   N+  + A++  IG  V+D +VV + +          
Sbjct: 361 IPLIVVPIALTGSFFVMYAMGFSINVLTLLALVLAIGLVVDDAIVVLENI---YAKIEEG 417

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASS 811
                   +   E     V TS++  I   P+   G   G +   F + +A  +  ++  
Sbjct: 418 KDTMVAGLEGTREIFFAVVATSVSLVIIFAPIIFMGGLTGQLFQEFGMVIAGAVAFSSFV 477

Query: 812 SIFIAAPILLFIYDWRAKN 830
           ++ +   +   +   R + 
Sbjct: 478 ALTLTPMLSTRLLKQRDEK 496


>gi|308064325|gb|ADO06212.1| preprotein translocase subunit SecF [Helicobacter pylori Sat464]
          Length = 323

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILNFMRYSNYGVVVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR              +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFGKEARFKGVQVSEFGSKEEMLI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|241204920|ref|YP_002976016.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240858810|gb|ACS56477.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1050

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 79/571 (13%), Positives = 159/571 (27%), Gaps = 41/571 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+      LP   + ++P   P               L +    
Sbjct: 8   RPILAWVFAIFISIAGLIA-----LPFLPVAQYPKVAPP-------------QLSITTSY 49

Query: 63  DDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                      +    +E  + ++       +        IT +FA     +  +  V  
Sbjct: 50  PGASPQDIYQGVTRQIEEELNGVEHLSYFESTSDTSGAMTITATFAAGTDIDQASVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V  +L    K   +         ++          +  +     + R  I ++   
Sbjct: 110 AIRRVEPRLPQSVKDQGITVEEASSGFLMFISLTSTDGKTDEVALGDYLNRNVIGELRRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP ++  L  T + +S      N        G      S 
Sbjct: 170 EGVGRAQLFASQR-AMRIWIDPDKMVGLNLTASDISAAISAQNAQVAAGQIGAAPNPISQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K +++                +    +                 I +     
Sbjct: 229 DLTATVLVKGQLT-------------DIKEFGDIVLRANADGSNVRLRDVARIEEGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +   T          L           V          
Sbjct: 276 SFSTRLNGQPSAAIAIQLSSTGNAVNTSNLVKAKMEELSRFFPAGVEYSVPYDTSPFVSA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+ + +   ++ ++    + + ++ TLA++   G ++ + ++
Sbjct: 336 SIEKVAHTLAEAVALVFVVMLIFLQSFRYTIIPTLVVPVALLGTLAVMFAAGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +      +    I    +      V 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERLMAVEGLSPKEATKKAMRQITGAILGITLVLSCVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R F++TM +SIL S F A+S+  A+    ++  K           F  
Sbjct: 456 MAFFPGSTGIIYRQFSLTMVVSILFSAFLALSLTPALCATFLKPIKGHHEKKGVAGWFNR 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLL 564
             D +  ++ R        S       + LL
Sbjct: 516 NFDRLTGRYARTVEGLAKRSWRVMAVYVALL 546



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V    E  +    S +        +       G++V  + +++   ++++   
Sbjct: 258 SNVRLRDVARIEEGSESYSFSTRLNGQPSAAIAIQLSSTGNAVNTSNLVKAKMEELSRFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P     +            I K    +  +   + + + I    + + +     + + + 
Sbjct: 318 PAGVEYSVPYDTSPFVSASIEKVAHTLAEAVALVFVVMLIFLQSFRYTIIPTLVVPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            TL      G   N+  + A++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTLAVMFAAGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERLMAVEGLSPKEATKKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  +  ++      +PMA + GS       F++ M   I+ +A  ++ +   +
Sbjct: 436 RQITGAILGITLVLSCVFVPMAFFPGSTGIIYRQFSLTMVVSILFSAFLALSLTPAL 492



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 57/166 (34%), Gaps = 11/166 (6%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                +   EL        +     + +++ +      W   L     L++ +       A
Sbjct: 851  EWTGQSLEELRSGSQAPFLFGLSILFVFLLLSGLYESWSIPLS--VMLVVPLGVIGCVLA 908

Query: 713  LFGIEF--NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +   +   ++     ++ +IG S  + +++ +  +          S  D   +       
Sbjct: 909  VMSRDMSNDIYFKVGLIAIIGLSAKNAILIVEFAKDGFAE---GKSLMDAAIEGARLRFR 965

Query: 771  RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + TS+A  + V+P+A+  G    S    +  G++    S+  +A
Sbjct: 966  PIIMTSLAFTLGVVPLAIATGPSAASQN-AIGTGVLGGMISATVLA 1010


>gi|260466897|ref|ZP_05813080.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mesorhizobium opportunistum WSM2075]
 gi|259029293|gb|EEW30586.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mesorhizobium opportunistum WSM2075]
          Length = 1059

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 75/685 (10%), Positives = 173/685 (25%), Gaps = 41/685 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I      +     L    + ++P   P                     +
Sbjct: 8   RPIFAWVIAIVIM-----LGGLLALTTLPISQYPQIAPTTV---------NISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +     +  ITL+F  S   +    +    LQ 
Sbjct: 54  AQTVENSVTKVIEQGMTGIDNLDYMTATSTSTGSASITLTFTSSADPDTAQVQTQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    + N +  +      +++          ++ + +  +     D +   E   
Sbjct: 114 VQSQLPQVVQSNGITVSKSSTGFLMVIGFVSSDGKMNSTDLADYVDATVNDTLKRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +       ++      N        G    R       
Sbjct: 174 STQLFGSG-YAMRIWLDPDKLAKYALMPNDVATAIEAQNTQVSAGQLGGLPARKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +                 +    I   +             +           
Sbjct: 233 TVTAKSRL-------------QTAEQFRNIILKSQTDGSLVRLNDVATVELGAESYTTQA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T E        L +        +           S   
Sbjct: 280 NYNGKPAAGVAVNLATGANAISTAEAVRTTINRLSSTFPQGVEVVYPYDTSPFVRLSIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+F+ +   +  ++   ++ + ++ T  +LSL G ++   ++  +V
Sbjct: 340 VVKTLAEAIVLVFLVMFIFLQNLRATIIPTIAVPVVLLGTFGVLSLFGYSVNTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +           +           V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMHEITGALIGIATVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLS 529
           GG      R F++T+  ++++S+  A+ +  A+   I         +       +     
Sbjct: 460 GGSTGIIYRQFSVTIVSAMVLSVLVALVLTPALCATILRPPKDHATQTGPFGWFNRTFDR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                 D       R+  +      +                  + +G +   V      
Sbjct: 520 GTTAYRDGSHGIINRSWRFLAVFLAIVVAMGWMFARLPSSFLPEEDQGILITSVQLPVGA 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                   L+ +    ++ +    E  F        G           +K         S
Sbjct: 580 TQDRTERVLKQVTDHYLNDEKDAVEGVFTASGFGFGGAGQNVGIGFVRLKDFSQRKTAAS 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
             Q           ++    +  + 
Sbjct: 640 AAQAIAGRAMGAFSKIRDAQVFALA 664



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 75/201 (37%), Gaps = 8/201 (3%)

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           + + +   G    L         + A    +  +     + V +    +T         E
Sbjct: 280 NYNGKPAAGVAVNLATGANAISTAEAVRTTINRLSSTFPQGVEVVYPYDTSPFVRLSIEE 339

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           +++     +++  + M I++         +     + + +  T G  +LFG   N   + 
Sbjct: 340 VVKTLAEAIVLVFLVMFIFLQ---NLRATIIPTIAVPVVLLGTFGVLSLFGYSVNTLTMF 396

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A++  IG  V+D +VV + +     +    +  ++   KS++E  G  +  +       +
Sbjct: 397 AMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMHEITGALIGIATVLSAVFV 454

Query: 785 PMAVWGGSV---IGSFAIPMA 802
           PMA +GGS       F++ + 
Sbjct: 455 PMAFFGGSTGIIYRQFSVTIV 475



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 80/271 (29%), Gaps = 9/271 (3%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                  N+ +  +   +  V       +            G    + ++G     ++   
Sbjct: 768  YMQSDANFRMQPEDLDKWQVRNASGAMVPFSAFASSHWTFGSPRLERYNGSAAVEIQGAA 827

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
              G S                                   + +    +  ++  + +   
Sbjct: 828  ATGISSGAAMDEIDRLMAQLPAGYSHEWTGLSHQERLSGNQALSLYAISALVVFLCLA-- 885

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +   W      + ++ + I   L    LFG   ++     +LT IG +  + +++ + 
Sbjct: 886  -ALYESWSIPFAVMLSVPIGIFGALVAATLFGQTNDVYFKVGLLTTIGLAAKNAILIVEF 944

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
              +     T  +   +   ++  +     + TS+A  + V P+A+    G     S  I 
Sbjct: 945  AIE---RQTAGMGLVEATLEAARQRSRPILMTSLAFILGVTPLAIASGAGSGAQNSVGIG 1001

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  G++ A    +F+   + + +       A
Sbjct: 1002 VMGGMIAATVIGVFLVPLLFVTVRRIFKGRA 1032


>gi|227542213|ref|ZP_03972262.1| preprotein translocase subunit SecF [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227182042|gb|EEI63014.1| preprotein translocase subunit SecF [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 412

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/319 (20%), Positives = 138/319 (43%), Gaps = 11/319 (3%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            N      L      I F+  R     I+++        +   G   GIDF+GG ++ + 
Sbjct: 15  TNHSFLTRLYTGEGGIDFVGRRKLWYIITLVVLAVCALGIIFRGFTLGIDFQGGTKMTMP 74

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A      +V R+  E+  +     Q    + + ++ +  +           E +  +   
Sbjct: 75  AANLDTAAVSRTFEEATGVTPEGVQIVGAQDSRILEIASERLSDEQIMSAREALYTEFQP 134

Query: 645 IVPL----STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                           V       +  + IV      + + IYI IRF+   ++ AI  L
Sbjct: 135 KDASGEVTPDAVGDSTVSESWGSTITNRMIVAFGAFLLLIFIYIAIRFERDMSVAAIAAL 194

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFR 758
            +D     G +ALFG+E     V  +LT++ +S+ D VVV+D++++N +   +TT  ++ 
Sbjct: 195 GVDGVFIAGCYALFGMEVTPAVVIGLLTVLAFSLYDTVVVFDKVQENTEGFEHTTRKTYA 254

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSI 813
           +L + ++N+T+ RS+ T++ + + ++ +      + G   +   A+    G++    SS+
Sbjct: 255 ELANLAVNQTVMRSISTTVISALPIIALMIVAVWLMGVGTLKDLAVVQLIGVIEGTFSSV 314

Query: 814 FIAAPILLFIYDWRAKNAR 832
           F+A P+L+ + + + K  +
Sbjct: 315 FLATPLLVSMKNRQKKFKK 333


>gi|15836830|ref|NP_297518.1| preprotein translocase subunit SecD [Xylella fastidiosa 9a5c]
 gi|9105034|gb|AAF83038.1|AE003876_3 protein-export membrane protein [Xylella fastidiosa 9a5c]
          Length = 614

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 147/520 (28%), Positives = 251/520 (48%), Gaps = 39/520 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  + K     + LGLDL GG H  L+VD+   +N  +  + +E+RS L  + I
Sbjct: 103 NLASTVPDWLAKLGGRPMVLGLDLVGGVHFALQVDQKAALNKCMDAFVEEVRSTLGSKRI 162

Query: 87  GVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           G   + R+  N I ++F D          +               +  L  + +   +  
Sbjct: 163 GFRMVERRPDNTIRVTFDDDAHLNEARMVLFKE------------QVGLNYSVSGNTLIA 210

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +S+N + Q+ S A+EQ++  +R RI+++G++E  IQR G  RI+++LPG QD +  ++L
Sbjct: 211 RVSENELRQIASGAVEQNLTTLRNRINELGVAEPIIQRQGDDRIVVELPGVQDTAEAKRL 270

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SDGNQYLVEDKVEISGIHLNGATA 259
           +G TA + F  V+  ++ +    G                  L+  +V +SG  +  AT 
Sbjct: 271 IGATATLEFRGVVDGDAYEAVRTGNVPPEAKVYYIRGTNQPVLLNKRVIVSGDEMVNATV 330

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEV-----------------TRDNIGKPLAVVLDGRV 302
             D      V     +  G R                      T   +       +  + 
Sbjct: 331 GVDENGMPAVNVTLSNVAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKE 390

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A   GK   +       A  L+ +LRAGSL   ++ VEE  +G  LG++++ 
Sbjct: 391 EALSPTRIAGVFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVE 450

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G  A+V   +  ++F  + Y  +G++   ++  N+++ +A++SL GAT+TLP  AG+ L
Sbjct: 451 RGVTAVVFSFLFTLVFFTIYYRMFGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLAL 510

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL+VD+N+L+NERIREE R       ++  G+ +A STI D+N+T LI  V L+ FG 
Sbjct: 511 SVGLSVDANVLINERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGT 570

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G ++GFA+TM + I  SMFTAI++ R++   I   +K   
Sbjct: 571 GPLKGFALTMIIGIFASMFTAITVSRSLSALIYGTRKNLK 610



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 97/280 (34%), Gaps = 4/280 (1%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +     ++  +    +           + V+    +    +    E   +          
Sbjct: 337 MPAVNVTLSNVAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPT 396

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +    ++                +   +          ++GP +  E + +G+  V
Sbjct: 397 RIAGVFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAV 456

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           + S +  L++  I ++  F +     L+ ++   +   +LFG    L   A +   +G S
Sbjct: 457 VFSFLFTLVFFTIYYRM-FGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLS 515

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  V++ +R+R+ ++     +  R  I    ++     +  ++   I  + +  +G   
Sbjct: 516 VDANVLINERIREELR---HGMPPRSAIVAGYDKAGSTILDANLTGLIVGVALYAFGTGP 572

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +  FA+ M  GI  +  ++I ++  +   IY  R     +
Sbjct: 573 LKGFALTMIIGIFASMFTAITVSRSLSALIYGTRKNLKSL 612


>gi|315638282|ref|ZP_07893463.1| protein-export membrane protein SecD [Campylobacter upsaliensis
           JV21]
 gi|315481629|gb|EFU72252.1| protein-export membrane protein SecD [Campylobacter upsaliensis
           JV21]
          Length = 527

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 158/542 (29%), Positives = 285/542 (52%), Gaps = 35/542 (6%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           + ++++ ++   G+  +LP+FL               +I+LGLDL+GG +++L VD  + 
Sbjct: 8   YRLLVFIVVFIFGIAFSLPSFLQSE---------RGAKINLGLDLQGGLYMLLGVDNKEA 58

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   ++  +  L   + KE I +  +      +  S  D      +   +          
Sbjct: 59  VKSKMKSVASSLHYSINKENILIDQLIVKDEGLEFSLLDEGDMTKMQALLDEI------- 111

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                 K L V       ++  +Q  +  + + A+ Q++E IR R+D+ G++E T+ + G
Sbjct: 112 ------KGLNVQKDNLHFAVSFTQEELKNIENFALLQAVETIRNRLDEFGLAEPTVAKQG 165

Query: 186 SHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------- 235
             +IL++L G +   D  R ++ +   A +   +V  +   K                  
Sbjct: 166 EDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDESKMSKASAMSEAEAASYGLVLMS 225

Query: 236 ---SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
              ++  +Y +++   + G  L  A   F   +  PV++ + +  GA++F + T  N+GK
Sbjct: 226 DSRNENLKYTLKNIPILDGSMLTDARVGFSDTSTYPVINFTLNSEGAKKFADYTGANVGK 285

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L   + ++E+R++
Sbjct: 286 RLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLAPVKLLEQRSI 345

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG+DSI     A++   V I++FM++ YG  G+ A+ ++ +NV++ +A++++ GATL
Sbjct: 346 GPSLGADSIKMSMIALIGASVFIIVFMMLYYGVAGVFANIAMLVNVLVVVAVMAMFGATL 405

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP +AG+VL +G+AVD+N+++NERIRE  R    +  S++ G+  A S I D+NIT+L+
Sbjct: 406 TLPGMAGLVLTVGMAVDANVIINERIRELLRDGVKIRASVEQGYKNAMSAIIDANITSLV 465

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +V L+ +G GAV+GFA+T+G+ I++SM TAI     M  + +   +  +          
Sbjct: 466 TSVALYAYGTGAVKGFAVTLGIGIVVSMITAIWGTHGMFDYFMHKIEKSNNTRFWFGYKR 525

Query: 533 LI 534
            I
Sbjct: 526 KI 527



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 81/160 (50%), Gaps = 4/160 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I +++ +++++ + +     + A   +++++   +   A+
Sbjct: 342 QRSIGPSLGADSIKMSMIALIGASVFIIVFMMLYYGV-AGVFANIAMLVNVLVVVAVMAM 400

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++        R  +++     +   +
Sbjct: 401 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVK---IRASVEQGYKNAMSAII 457

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             ++ + ++ + +  +G   +  FA+ +  GIVV+  ++I
Sbjct: 458 DANITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAI 497


>gi|91788152|ref|YP_549104.1| acriflavin resistance protein [Polaromonas sp. JS666]
 gi|91697377|gb|ABE44206.1| acriflavin resistance protein [Polaromonas sp. JS666]
          Length = 1051

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 74/547 (13%), Positives = 168/547 (30%), Gaps = 39/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  +I  +G +        +  +  +P                   +     
Sbjct: 9   RRPVFATVLSLLIVLVGAVS-----FNRLTVREYPKIDEPVVT---------VSVRYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +    +     R  Q +I++ F   +  ++ A +V      
Sbjct: 55  SAEVIESQVTKPLEDSIAGIDAVDVITSISRADQAQISVRFRLEKDADSAAAEVRDRTSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L     + ++         ++    + +      ++ +  + R    ++       
Sbjct: 115 VRNRLPQAIDEPVIAKVEADAFPVIQIAFSSES--MTPLQINDLVNRIVKPRLQTVTGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  RL     TT  +       N          +    S  +Q 
Sbjct: 173 DVRIFGERKYAMRVWLDTDRLAAYRLTTQDVEDAIRRSNLELPAGRIESQQREFSVTSQT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +   I +                      +            + +  A      
Sbjct: 233 DLVKPSQFGEIVIK--------------------NVNGFSVKVRDVARVQEGPADERTAV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +       +A  +     +    +   LRA   P  L  +   N      S   
Sbjct: 273 RLNGRSVVAVGVIRQATANPLDLSKGVRDVIPRLRADLPPGMLIDIANDNSVFIDRSVRN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A   GLV +V+F+ +   +  L+   +I +++I T AL++L G T+   ++  +V
Sbjct: 333 VYRTIAEAVGLVALVIFVFLRTLRASLIPIVTIPVSLIGTFALMALAGFTINTLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I     +    F +   G       +     T +     L F  
Sbjct: 393 LAIGLVVDDAIVMLENIFRHIEEGMDPFSAGIRGAREIGFAVVTMTATLVAVYAPLAFTP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA+ +  ++++S F A+++   +   ++R+    ++    + R        
Sbjct: 453 GRTGRLFVEFALALAGAVVVSGFVALTLTPMLCTQLLRHNPKPNLFDRTMERVLTATSDR 512

Query: 539 AIQFMRA 545
               +R 
Sbjct: 513 YGAVLRW 519



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 63/164 (38%), Gaps = 7/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           +   +  +A++I++++R     +L  I T+ + +  T    AL G   N   + A++  I
Sbjct: 337 IAEAVGLVALVIFVFLR-TLRASLIPIVTIPVSLIGTFALMALAGFTINTLTLLALVLAI 395

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ + +    +     +       +   E     V  +        P+A   
Sbjct: 396 GLVVDDAIVMLENI---FRHIEEGMDPFSAGIRGAREIGFAVVTMTATLVAVYAPLAFTP 452

Query: 791 GSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           G        FA+ +A  +VV+   ++ +   +   +     K  
Sbjct: 453 GRTGRLFVEFALALAGAVVVSGFVALTLTPMLCTQLLRHNPKPN 496



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 72/212 (33%), Gaps = 9/212 (4%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            R         A   + E +K        +     +  +          +G + ++     
Sbjct: 818  RSVSITASLAADYSLGEALKFMDQTAAKVLKTGYSTDLNGTSREFRNSQGALAIVFVLAL 877

Query: 680  MLIYIWIRFKWYF---ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + I++ +  ++      L  + ++ L +   L      G   N+ +   ++TL+G     
Sbjct: 878  VFIFLVLSAQFESFIDPLVIMLSVPLSMIGALLALKWSGGSLNVYSQIGLITLVGLITKH 937

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ +      +L    +   D + K+ ++ L   + T+ A  +  +P+A+    G   
Sbjct: 938  GILIVEF---TNQLRGQGMEMVDALVKASSQRLRPILMTTGAMVLGAVPLALADGAGAES 994

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                   +  G+ +    +IF+   +      
Sbjct: 995  RIQIGWVIVGGMSLGTLLTIFVVPTMYSLFAR 1026


>gi|317406703|gb|EFV86866.1| efflux system transmembrane protein [Achromobacter xylosoxidans
           C54]
          Length = 1073

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/621 (11%), Positives = 170/621 (27%), Gaps = 51/621 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L       P   + ++P   P +             + +    
Sbjct: 8   RPIFAWVVALFILLAGILAI-----PNMPVSQYPDVAPPD-------------ITITATY 49

Query: 63  DDFV-NGFLQMYSDELRSFLKKEG--IGVFSMRQ--IQNKITLSFADSRFKENIADKVTL 117
                    +  +  +   L      I   S+      + IT +FA  R  +     V  
Sbjct: 50  PGASAKEVAESVTSIIEDKLNGAKGLIYYESVSDSYGTSTITATFAPGRDPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V ++L    ++  L         +++   +           +  I R   + +   
Sbjct: 110 RVSNVIAQLPSAVQQQGLKYEQTSTGFLMIVTLSSTDGSLDQTALADYITRNIQNPVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L     + ++++      N    G   G     DS 
Sbjct: 170 SGVGQFQLFAAPR-AMRIWVDPAKLVGFSLSMSEVNQAIAAQNVLVSGGSIGAPPNPDSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    ++S +                   +        +        I       
Sbjct: 229 RITATVVANGQLSTVD-------------GFGKIVLRANSDGSKVLLRDVARIEVGADNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G  L                +   T +        L           +          
Sbjct: 276 QFGARLNGKPTAAFAIVLSPDANALATAQGVRQQMDELSKYFPGNITYAIPYDTAPYVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+++ +   ++ L+    + + ++ + A++   G ++ + ++
Sbjct: 336 SIEQVLHTLAEAMVLVFLVMYLFLQNVRYTLIPALVVPVAMLGSFAVMLGFGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    I    +  +   + 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERIMATEGLPPKEATKKAMPQISGAIIGITLVLVTVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           L F  G      R F++ M +SI  S   A++   A+   I           +       
Sbjct: 456 LAFMSGSVGVIYRQFSVAMAVSIFFSALLALTFTPALCATILKPVPKGHHNDKKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    +      + ++    +     +   +L  +     L         + +G +   +
Sbjct: 516 NRKFDATTHGYQNWVSRILHKGGRMMLAFLVLVILLGWLYLRLPSSFLPEEDQGYVISNI 575

Query: 584 LANRPVDLSVVRSNLESLQIG 604
                   +     +E ++  
Sbjct: 576 ELPTGASANRTVQVIEEVEAY 596



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 83/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +           +     +++A  + +     ++++  P +   
Sbjct: 264 DVARIEVGADNYQFGARLNGKPTAAFAIVLSPDANALATAQGVRQQMDELSKYFPGNITY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  +  + + + + +++  +   + L     + + +  +    
Sbjct: 324 AIPYDTAPYVKVSIEQVLHTLAEAMVLVFLVMYLFLQNVRYTLIPALVVPVAMLGSFAVM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             FG   N+  + A++  IG  V+D +VV + +     + T  +  ++   K++ +  G 
Sbjct: 384 LGFGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERIMATEGLPPKEATKKAMPQISGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  ++      LP+A   GSV      F++ MA  I  +A  ++     +
Sbjct: 442 IIGITLVLVTVFLPLAFMSGSVGVIYRQFSVAMAVSIFFSALLALTFTPAL 492



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 61/147 (41%), Gaps = 7/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +  + L +   +   +  G+  ++     ++T+IG +  + +++ +  +   
Sbjct: 891  SWAIPISVMLVVPLGMLGAVALVSALGMSNDVYFQVGMVTVIGLAAKNAILIVEFAKD-- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
              Y   +   +   ++        + TS+A  + V+P+A+    G +   +  + +  G+
Sbjct: 949  -QYARGMGLYEAAVEAARLRFRPILMTSLAFILGVVPLAMATGAGAASQRAVGLGVLGGM 1007

Query: 806  VVAA-SSSIFIAAPILLFIYDWRAKNA 831
            + A   + IF+    ++ +  ++ K  
Sbjct: 1008 LAATPFAVIFVPTFFVVVLGLFKTKPR 1034


>gi|254247350|ref|ZP_04940671.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
 gi|124872126|gb|EAY63842.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
          Length = 1054

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 70/568 (12%), Positives = 155/568 (27%), Gaps = 46/568 (8%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           ++  ++   G+            + ++P+  P               + +  +       
Sbjct: 2   VIAIILMLAGVAAIF-----TLPISQYPTIAPP-------------SIQITANYPGASAK 43

Query: 69  FLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
            ++      +   +        +   S       ITL+FA     +    +V   L    
Sbjct: 44  TVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQNKLSLAT 103

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    ++  L  T      +++   N +    +  + +  +     D I         
Sbjct: 104 PVLPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANFVASHVKDPISRLNGVGTV 163

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                    +    DP+RL     T   +S      N    G   G          Q  +
Sbjct: 164 TLFGSQ-YAMRIWLDPNRLTNYGLTPVDVSSAITAQNVQIAGGQIGGTPATPGTVLQATI 222

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
            +   +                 +    +        +        IG            
Sbjct: 223 TESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGENYNFDTKY 269

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                           +   T +        L        +             S     
Sbjct: 270 NGQPTAALGIQLATNANALATAKAVRAKIDELAPFFPHGLVVKYPYDTTPFVKLSIEEVV 329

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++   S+ G+VL 
Sbjct: 330 KTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINTLSMFGLVLA 389

Query: 424 IGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           IGL VD  I+V E +      +  S   +      +    +    +      V + F GG
Sbjct: 390 IGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVPVAFSGG 449

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R F++T+  ++++S+  A+ +  A+   I     +K I                
Sbjct: 450 SVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKGFFGWFN 504

Query: 540 IQFMRARFWGVGISILFSICSICLLFTH 567
             F  +R             S   L  +
Sbjct: 505 RTFNNSRDKYHVGVHHVIKRSGRWLIIY 532



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     ++    
Sbjct: 246 SQVRLKDVAQIGLGGENYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELAPFF 305

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           +  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 306 PHGLVVKYPYDTTPFVKLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 365

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 366 GTFAIMSMVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 423

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 424 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 480



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 80/219 (36%), Gaps = 8/219 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K   +    +         +   +    
Sbjct: 804  ERYNGVSAMEIQGQAAPGKSTGQAMAAMETLAKKLPVGIGYSWTGLSFQEIQSGSQAPIL 863

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    + G+E ++     +LT
Sbjct: 864  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATMRGLENDVFFQVGLLT 920

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + V+P+A+
Sbjct: 921  TVGLSAKNAILIVEFARE--LQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVMPLAI 978

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G +   +    +  G++ A   +IF+     + I 
Sbjct: 979  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKIR 1017



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 58/521 (11%), Positives = 132/521 (25%), Gaps = 36/521 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 524  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTAKT 577

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L+   + + S     G       Q    + +   D   +++   KV   +  
Sbjct: 578  LANISDYLLKDEKEIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSQRQHANQKVQALIGR 637

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +        ++         +  +     ++  +A      ++  R   +G++    
Sbjct: 638  MFGRYGSYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMASKDP 697

Query: 182  QRLGSH----RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               G          Q     D  +   L  T   +     +                   
Sbjct: 698  TLQGVRPNGLNDTPQYKVNIDREKANALGVTADAIDQTFSIAW----------------- 740

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 V + ++  G           P    P     +                       
Sbjct: 741  -ASKYVNNFLDTDGRIKKVYVQADAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTYG 799

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     V    I    A          A    A      +      +  + + +   
Sbjct: 800  SPKLERYNGVSAMEIQGQAAPGKSTGQAMAAMETLAKKLPVGIGYSWTGLSFQEIQSGS- 858

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                     AI   +V + L  +             + L VI  L   ++ G    +   
Sbjct: 859  ---QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATMRGLENDVFFQ 915

Query: 418  AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  + 
Sbjct: 916  VGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVMP 975

Query: 477  LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            L      G  +       +   ++ + F AI ++    + I
Sbjct: 976  LAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFVKI 1016


>gi|323164267|gb|EFZ50074.1| inner membrane domain protein [Shigella sonnei 53G]
          Length = 530

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 60/521 (11%), Positives = 143/521 (27%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPA-------------VTISASY 49

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  V   +    ++  + +        +       +ITL+F      +    +V  
Sbjct: 50  PGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++             + S  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAANMKDAISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P+ L +   T   +       N        G        
Sbjct: 170 SGVGDVQLFGSQ-YAMRIWMNPNELNKFQLTPVDVITAIKAQNAQVAAGQLGGTPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        R        I       
Sbjct: 229 QLNASIIAQTRLTSTE-------------EFGKILLKVNQDGSRVLLRDVAKIELGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T        A +          +           
Sbjct: 276 DIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKIVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++
Sbjct: 336 SIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +      +      +    +    +      V 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   +
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATM 496



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 82/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +  DI  +      + L        +++     +     K+    P     
Sbjct: 264 DVAKIELGGENYDIIAEFNGQPASGLGIKLATGANALDTAAAIRAELAKMEPFFPSGLKI 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + I + + +++  + +   L     + + +  T    
Sbjct: 324 VYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+ +  G 
Sbjct: 384 AAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLPPKEATRKSMGQIQGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 442 LVGIAMVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 492


>gi|73542746|ref|YP_297266.1| hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134]
 gi|72120159|gb|AAZ62422.1| Hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134]
          Length = 1057

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 73/685 (10%), Positives = 170/685 (24%), Gaps = 42/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L +  + +FP   P                      
Sbjct: 10  RPIFASVLSIIITVGGLVA-----LTKLPIAQFPDITPPTITVT-------------TRY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + Q  +  +   +        +   S       +T  F      E     V  
Sbjct: 52  PGASAEVVAQNVAAPIEQQVNGADRMMYMNSTSSSTGDLTLTSYFEIGTDPELAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +     +         +++          +            +D I   
Sbjct: 112 RVNLALPTLPSEVTSQGVSVQKRSSAFMMVIAIYSPDNSYNQTFVGNYANIYVLDAIKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+  L  TT  +       N        G        
Sbjct: 172 PGANQSSIFGSPDYAMRIWLRPDRMASLGITTEDVKNAVSAQNQQFSAGRIGQSPTNGPV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + +  K  ++                   + +                +        
Sbjct: 232 QLTFPISTKGRMT------------EPAEFDNMILRAQSGETALVRLKDIGHAELGSKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +      A L+    P     +          
Sbjct: 280 SLRSRYKGKTATLMAVYQQPGANALDVAKQVRATLAELKKSFPPGLEYEIALDTTEFVQE 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV++V+++ +   +  LV   ++ +++I     +S  G ++ + ++
Sbjct: 340 SITEVVHTLRDAVILVILVVYLFLQSFRATLVPILAVPVSIIGAFVGMSAFGFSVNMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473
            G+VL IG+ VD  I+V E +             +              I    +   I 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMTEFKLPPKEAAKKAMDEVSGPVVAIVLVLLAVFIP 459

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   + FAIT+ +S+++S   A+++  A+   +++  + K            
Sbjct: 460 VAFLSGITGQLYKQFAITIAVSVVLSGVVALTLSPALAAILLKPGEHKKNRFFTWFNNKF 519

Query: 534 IPDCIAIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                          R   V I+++  + ++ +L    +               A    D
Sbjct: 520 DQLIAGYDKSLQLVIRRTVVSIALILVMVAVSVLMFIRIPSSFLPVEDQGYLFGAVVMPD 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +    +  +  +       G  +      Y   DS  +     +             
Sbjct: 580 AASLDRTGDLTKRAEKWLSGQPGVASVATVDGYSLIDSQNKANAGTLFITLKGFHDRGKG 639

Query: 651 IQNTEIVGPKISRELIRKGIVGVII 675
               +++          +  + + I
Sbjct: 640 ESANDLIAKGKKEFSTYQDGLAIPI 664



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 64/154 (41%), Gaps = 5/154 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              + +L+       +   L  I  + + I       + FG   N+  +  ++  IG  V
Sbjct: 351 AVILVILVVYLFLQSFRATLVPILAVPVSIIGAFVGMSAFGFSVNMLTLFGMVLAIGIVV 410

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + + +NM  +   +  ++   K+++E  G  V   +      +P+A      G
Sbjct: 411 DDAIVVIENVERNMTEF--KLPPKEAAKKAMDEVSGPVVAIVLVLLAVFIPVAFLSGITG 468

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   FAI +A  +V++   ++ ++  +   +  
Sbjct: 469 QLYKQFAITIAVSVVLSGVVALTLSPALAAILLK 502



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
              +     + + + + +  +++ W   LG +  +   +   L    + G+E ++     +
Sbjct: 870  TAVYVFAFALLMVFLILAAQYEKWSLPLGVLLAVPFALFGALLGILMRGMENDVYFQIGL 929

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
              LI  +  + +++++   +  +     +S  D    +    L   + TS+A  +  +P+
Sbjct: 930  TVLIALAAKNAILIFEFAVEMREKE--GLSAYDAAIHASKLRLRPIIMTSLAFILGCVPL 987

Query: 787  AVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+  G+      S    +  G++ A   ++F     + F    R    +
Sbjct: 988  AIASGASAASRQSLGTGVIGGMLGATVIALFFIP--MFFWGLERMSEGK 1034


>gi|218288852|ref|ZP_03493103.1| protein-export membrane protein SecF [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240941|gb|EED08118.1| protein-export membrane protein SecF [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 308

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/298 (27%), Positives = 139/298 (46%), Gaps = 3/298 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                  +RA  W   +S   ++  + +    G N   DFK G ++    N+ V  + VR
Sbjct: 1   MKPRFDIIRASRWFFLLSGAITVAGVIVFALFGFNLSTDFKSGSEVQFELNQRVPEARVR 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               S+ +         G     V +   P    A+        +               
Sbjct: 61  QMFASIGLPLGDTSLTVGGIQQNVVMVTLPEQLTAKQISEIQAAEHRFFPDAKQD-IQVN 119

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V P ++ +  RK +  V+ +A  +++YI IRF++ FA+  I  L+ D    L  FAL  
Sbjct: 120 SVDPFVAEQTARKAVYAVLAAAACIVVYIAIRFEFRFAISGIIALLHDAFIVLAAFALLR 179

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSV 773
            E +LT VAA+LT++GYS+ND +V++DR+R+N+K     T    R +++KS+ + + RS+
Sbjct: 180 REVDLTFVAALLTIVGYSINDTIVIFDRIRENLKIDKPETVDELRAVVNKSLWQVMNRSI 239

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T +   I+ + +  +GG  I +F   +  G+V  A SSIFIA+PI +       K A
Sbjct: 240 RTVLTVLIAAVILYFFGGISIRNFTFALIIGLVSGAYSSIFIASPIWVAWRSRLMKKA 297


>gi|152972544|ref|YP_001337690.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150957393|gb|ABR79423.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 1035

 Score =  185 bits (469), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 75/687 (10%), Positives = 187/687 (27%), Gaps = 47/687 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P               + +   
Sbjct: 8   RRPVFAWVIAILIMLAGVLAI-----RTLPVGQYPDVAPPA-------------VKISAT 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   L+      +   L            S       IT++F      +    +V 
Sbjct: 50  YTGASAETLENSVTQVIEQQLTGLDHLLYFSSTSSSDGSVSITVTFEQGTDPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   S+L  + +++ +     +   +++         + + + S  ++    D +  
Sbjct: 110 NKVQQAESRLPSEVQQSGVTVEKSQSSFLLILAVYDKTNRATSSDISDWLVSNMQDPLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    DP++L       + +       N        G     ++
Sbjct: 170 VEGVGSLQVFGA-EYAMRVWMDPTKLASYSLMPSDVQSAIEAQNVQVSAGKIGALPSSNA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  +  +                 +    I   +             +      
Sbjct: 229 QQLTATVRAQSRL-------------QTPDQFKAIIVKSQADGSVVRLSDVARVEMGSED 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +   T        A  +            + +     
Sbjct: 276 YTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQGYDIAYPKDSTEFIK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   +
Sbjct: 336 ISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGTFGVLALFGYSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +    R        + +         +    +      +
Sbjct: 396 LFAMVLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F++T+  ++++S+  A+++  A+   ++ + K  +          
Sbjct: 456 PMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALLSHSKPHTKGFFGAFNRL 515

Query: 533 LIPDCIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                   Q        R   +  +      ++ L         +  +   ++ V    P
Sbjct: 516 WGRTEAGYQHRVLGGLRRGAVMMGAYALICGAMALAMWKLPGSFLPVEDQGEIMVQYTLP 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR--VLEMVKKKITEIV 646
              + VR+     Q+ D          + +  +         Q        +K       
Sbjct: 576 AGATAVRTAEVRRQVTDWFLTKEKANTDVIFTVDGFSFSGSGQNAGMAFVSLKNWSQRKG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
             +T Q   +   K    +    +  +
Sbjct: 636 DDNTAQAIALRATKELGTIRDATLFAM 662



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +    +          +  +     +++    +++    +    +P 
Sbjct: 261 VRLSDVARVEMGSEDYTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + I ++  +++  + +   L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LPMA +GGS       F++ +   ++++   ++ +   +   + 
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALL 498

Query: 825 DWRAKNAR 832
                + +
Sbjct: 499 SHSKPHTK 506



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 76/252 (30%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +               Q G  S   ++G   F ++ +   G S              
Sbjct: 786  VRGSDNSMTPFSAFATTHWQYGPESLVRYNGSAAFEIQGENAAGFSSGAAMDKMEKLADS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    + +++  + +     +   W      I  + L
Sbjct: 846  LPAGSTWAWSGISLQEKLASGQAMSLYAISILVVFLCLA---ALYESWSVPFSVIMVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        L G+  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAATLRGLSNDVYFQVALLTTIGLSSKNAILIVE-FAE--SAVDEGYSLSRAAI 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   V TS+A    VLP+A+    G +   +    +  G + A   ++F     
Sbjct: 960  RAAQTRLRPIVMTSLAFIAGVLPLAIATGAGANSRVAIGTGIIGGTLTATLLAVFFVPLF 1019

Query: 820  LLFIYDWRAKNA 831
             + +     +  
Sbjct: 1020 FVLVKRLFTRQR 1031


>gi|300866921|ref|ZP_07111595.1| RND multidrug efflux transporter [Oscillatoria sp. PCC 6506]
 gi|300335110|emb|CBN56757.1| RND multidrug efflux transporter [Oscillatoria sp. PCC 6506]
          Length = 1067

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 79/565 (13%), Positives = 164/565 (29%), Gaps = 31/565 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +G +       P   ++RFP   P  +I+         +      
Sbjct: 8   KRPVFASVCALIIILVGAISI-----PSLPIERFPDISP-TQIN--------VNANYSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++       S      + IT +F  SR K+  A  V   + 
Sbjct: 54  SAEIVENAVTNILERQINGVEGLKYLTSSSSNDGTSTITATFDPSRNKDIAAVDVQNRVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L    ++  +  T +    ++      +      I  S        D +   +  
Sbjct: 114 VAQPQLPDAVQRTGVRVTKQSTSLLLAIGLFTENKEYDTIFLSNYADLYLADALKRVKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP++L     T   ++      N        G          Q
Sbjct: 174 GEVRIFGERRYAMRLWIDPNKLAARGLTMQDVTRSLNEQNLQVGAGRVGQEPAPQGQMYQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +    +   E                        
Sbjct: 234 IDLRAESRL-------------KDPAEFEEIVLKTEANGTLVKLKDVGRAELGAENYNSF 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +              L  G  P  ++ V          S +
Sbjct: 281 LRFRGNDAVGLGIYQLPGSNALNVAHAVKAEMERLAVGFPPGLIHRVALDTTLFVEESMA 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+IV+F+ +   +  ++   +I +++I T A + + G T+   S+ G+
Sbjct: 341 EVVKTLFEAVLLVVIVIFVFLQDWRTTIIPTITIPISLIGTFAFIKVFGFTINSLSLFGL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
            L  GL VD  I+V E I    R+  +   +        +S  I  S +   +   V FF
Sbjct: 401 TLATGLVVDDAIIVVENIDRLIRQGMNPRQAAFESMRELFSAVIATSLVLMAVFVPVAFF 460

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      + FA+T+  S+L+S F AI++  ++   ++R  +  S  +            
Sbjct: 461 PGTTGALYKQFALTIAFSVLLSTFIAITLTPSLAAILLRPGQKFSGPVGWFFGRVNSGLD 520

Query: 538 IAIQFMRARFWGVGISILFSICSIC 562
              +  R     +         +  
Sbjct: 521 WMQRQYRQSLIFLTGIKTIVALAFI 545



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T  F  +FG   N  ++  +    G  V+D ++V + +    +L    ++ R    
Sbjct: 377 SLIGTFAFIKVFGFTINSLSLFGLTLATGLVVDDAIIVVENI---DRLIRQGMNPRQAAF 433

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     + TS+      +P+A + G+       FA+ +AF ++++   +I +   +
Sbjct: 434 ESMRELFSAVIATSLVLMAVFVPVAFFPGTTGALYKQFALTIAFSVLLSTFIAITLTPSL 493

Query: 820 LLFIYDWRAK 829
              +     K
Sbjct: 494 AAILLRPGQK 503



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 78/215 (36%), Gaps = 11/215 (5%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                  S    + +E V  ++           T +   +       +  +   +  I + 
Sbjct: 828  PAPGASSGQAIKSMEKVAAQVLPAGFGYEWSGTSLEEIESGG----QAPIIFGLGLIFVF 883

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +  +++ +      +  + L I   L   +L G+  ++     ++ LIG +  + +++
Sbjct: 884  LVLAAQYENYVDPFIILLAVPLAILGALLAQSLRGLANDVYCQIGLVMLIGLASKNAILI 943

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSF 797
             +      +L            ++  E L   + TS++  + + P+      G +   S 
Sbjct: 944  VEFAN---QLRERGYPVAKAAVEAAQERLRPILMTSLSFILGIAPLVNPEGAGAASRRSL 1000

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               +A G++V+   S+FI   + + I   R +  +
Sbjct: 1001 GNAVAGGMIVSTFLSLFIVPVLYVVIVSARDRFKK 1035


>gi|71278690|ref|YP_268098.1| hydrophobe/amphiphile efflux-1 family protein [Colwellia
           psychrerythraea 34H]
 gi|71144430|gb|AAZ24903.1| hydrophobe/amphiphile efflux-1 family protein [Colwellia
           psychrerythraea 34H]
          Length = 1052

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/529 (13%), Positives = 160/529 (30%), Gaps = 39/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GL       +    + ++P   P               + +    
Sbjct: 9   RPIFAFVISIFIVLAGLAA-----MRSLSIAQYPEMSPPV-------------VQVTAVY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  L+      L + +   EG+   S          IT++F      +  +  V  
Sbjct: 51  PGASAEVLEQTVATPLENAITGVEGMMYMSSTSTSAGATTITVTFEIGTDPDQASVNVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V ++L  + ++  +V        + +           A+  S  +    ID+I   
Sbjct: 111 RVKQVEARLPEETRRQGVVVAKGSSSFLHVHAFYSPDDSREALWTSNYVTLNIIDKIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
             T            +     P  + QL  T  ++S      N+       G      S 
Sbjct: 171 PGTTSVQIFGAKDYAMRIWLRPDVMSQLGVTVEEISSAVREQNSQYAAGRIGATPTSVSP 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +                           +    I                 +       
Sbjct: 231 QSLVYSVK------------VQGRLSTAKEFEDIIIRANNDGSSLRLKDIARVELGSKDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +            +   +     +      A L         +++          
Sbjct: 279 DFDGRINGKKAVLLGIFLQPGANALDVADEVNATIAELETRFPTGLEHLLPYDTTRFVKV 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ ++++ T A L +LG ++   ++
Sbjct: 339 SIREVLKTLGEAMLLVFLVVFIFLQNWRATLIPIMAVPVSLLGTFAGLYMLGYSINTLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    + ++ SV  +           +    +      V 
Sbjct: 399 FGMVLSIGIVVDDAIVVLENVERIMHEEDVSVRDAAIKAMKEVSGPVVAIVLVLCSVFVP 458

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           + F G   G   R FAIT+ +S+ +S   A+++  A+ + +++++  K+
Sbjct: 459 IAFLGGLTGELFRQFAITISISVSLSGLVALTMTPALCVLVLKHEDKKT 507



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 71/203 (34%), Gaps = 9/203 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            + + +       +     +        +E    G   + +    +++++    +  +W  
Sbjct: 833  QAIAEIERIANEVLPSDMSYEWTGTAYQEKRSSGSTAIALGMAVIMVFLILAALYERWSL 892

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  +  L   I   L    + G+  ++     ++TL+G +  + +++ +     +    
Sbjct: 893  PLSVLLALPFGIFGALVSVWIAGMTSDVYFQIGLVTLLGLASKNAILIVE---YALMKKQ 949

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
               +      ++        + TS+A  + V+P+A+    G     S    +  G++ A 
Sbjct: 950  EGWTTGAAALEAARLRFRPIIMTSLAFILGVVPLALSSGAGAGARHSVGTGVMGGMIAAT 1009

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
              +IF       ++ + +    R
Sbjct: 1010 FLAIFFVPLFFYWLTERKISENR 1032



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 86/242 (35%), Gaps = 6/242 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +       +  D   +    +   L        +++     +     ++    P     
Sbjct: 267 DIARVELGSKDYDFDGRINGKKAVLLGIFLQPGANALDVADEVNATIAELETRFPTGLEH 326

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  +  +  IR+ +  +  + + + + ++I  + W   L  I  + + +  T    
Sbjct: 327 LLPYDTTRFVKVSIREVLKTLGEAMLLVFLVVFIFLQNWRATLIPIMAVPVSLLGTFAGL 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   N   +  ++  IG  V+D +VV + +     ++   +S RD   K++ E  G 
Sbjct: 387 YMLGYSINTLTLFGMVLSIGIVVDDAIVVLENV--ERIMHEEDVSVRDAAIKAMKEVSGP 444

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V   +      +P+A  G   G +   FAI ++  + ++   ++ +   + + +     
Sbjct: 445 VVAIVLVLCSVFVPIAFLGGLTGELFRQFAITISISVSLSGLVALTMTPALCVLVLKHED 504

Query: 829 KN 830
           K 
Sbjct: 505 KK 506


>gi|330005865|ref|ZP_08305406.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3]
 gi|328536085|gb|EGF62480.1| acriflavine resistance protein B [Klebsiella sp. MS 92-3]
          Length = 1035

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 75/687 (10%), Positives = 187/687 (27%), Gaps = 47/687 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P               + +   
Sbjct: 8   RRPVFAWVIAILIMLAGVLAI-----RTLPVGQYPDVAPPA-------------VKISAT 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   L+      +   L            S       IT++F      +    +V 
Sbjct: 50  YTGASAETLENSVTQVIEQQLTGLDHLLYFSSTSSSDGSVSITVTFEQGTDPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   S+L  + +++ +     +   +++         + + + S  ++    D +  
Sbjct: 110 NKVQQAESRLPSEVQQSGVTVEKSQSSFLLILAVYDKTNRATSSDISDWLVSNMQDPLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    DP++L       + +       N        G     ++
Sbjct: 170 VEGVGSLQVFGA-EYAMRVWMDPTKLASYSLMPSDVQSAIEAQNVQVSAGKIGALPSSNA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  +  +                 +    I   +             +      
Sbjct: 229 QQLTATVRAQSRL-------------QTPDQFKAIIVKSQADGSVVRLSDVARVEMGSED 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +   T        A  +            + +     
Sbjct: 276 YTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQGYDIAYPKDSTEFIK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   +
Sbjct: 336 ISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGTFGVLALFGYSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +    R        + +         +    +      +
Sbjct: 396 LFAMVLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F++T+  ++++S+  A+++  A+   ++ + K  +          
Sbjct: 456 PMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALLSHSKPHTKGFFGAFNRL 515

Query: 533 LIPDCIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                   Q        R   +  +      ++ L         +  +   ++ V    P
Sbjct: 516 WGRTEEGYQRRVLGGLRRGAVMMGAYALICGAMALAMWKLPGSFLPVEDQGEIMVQYPLP 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR--VLEMVKKKITEIV 646
              + VR+     Q+ D          + +  +         Q        +K       
Sbjct: 576 AGATAVRTAEVRRQVTDWFLTKEKANTDVIFTVDGFSFSGSGQNAGMAFVSLKNWSQRKG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
             +T Q   +   K    +    +  +
Sbjct: 636 DDNTAQAIALRATKELGTIRDATLFAM 662



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +    +          +  +     +++    +++    +    +P 
Sbjct: 261 VRLSDVARVEMGSEDYTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + I ++  +++  + +   L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LPMA +GGS       F++ +   ++++   ++ +   +   + 
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALL 498

Query: 825 DWRAKNAR 832
                + +
Sbjct: 499 SHSKPHTK 506



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 76/252 (30%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +               Q G  S   ++G   F ++ +   G S              
Sbjct: 786  VRGSDNSMTPFSAFATTHWQYGPESLVRYNGSAAFEIQGENAAGFSSGAAMDKMEKLADS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    + +++  + +     +   W      I  + L
Sbjct: 846  LPAGSTWAWSGISLQEKLASGQAMSLYAISILVVFLCLA---ALYESWSVPFSVIMVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        L G+  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAATLRGLSNDVYFQVALLTTIGLSSKNAILIVE-FAE--SAVDEGYSLSRAAI 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   V TS+A    VLP+A+    G +   +    +  G + A   ++F     
Sbjct: 960  RAAQTRLRPIVMTSLAFIAGVLPLAIATGAGANSRVAIGTGIIGGTLTATLLAVFFVPLF 1019

Query: 820  LLFIYDWRAKNA 831
             + +     +  
Sbjct: 1020 FVLVKRLFTRQR 1031


>gi|307131768|ref|YP_003883784.1| Multidrug efflux protein [Dickeya dadantii 3937]
 gi|306529297|gb|ADM99227.1| Multidrug efflux protein [Dickeya dadantii 3937]
          Length = 1055

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 79/689 (11%), Positives = 192/689 (27%), Gaps = 50/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           + ++P+  P               + ++   
Sbjct: 9   RPVFAWVIAIVIMLAGALSI-----ESLPVAQYPNVAPP-------------SVAIKASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   L            S      +IT +F      +    +V  
Sbjct: 51  PGASADTLENSVTQVIEQQLTGLDGLLYFSSSSDSSGDVRITATFTQGTNPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S+L  + ++  +  T  ++  +++         S A + +  ++    D +   
Sbjct: 111 KVQQATSRLPTEVQQQGITVTKSQQDFLLIMALYDTTDKSTAADIADYMVSNLQDPLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L       + +S      N        G +      
Sbjct: 171 EGVGSVQVFGSQ-YAMRIWMDPTKLAAYSLMPSDISSAVETQNTQVSAGKIGAQPASSDQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   E             +       
Sbjct: 230 QLTATVTAQSRL-------------KTPAQFRDIIVKSESSGALVRLGDVARVELGNEDY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +   T E      A               + +      
Sbjct: 277 TTTTRLNGHPAAGIAVMLSSGANALATAERVKAKVAEFTPQMPQGYEVSYPKDSTDFIKV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + ++ T  +L++ G ++   ++
Sbjct: 337 SVEEVVQTLFEAIALVVLVMFLFLQNLRATLIPAVAVPVVLLGTFGVLAVFGYSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   + +       S +    +      + 
Sbjct: 397 FGMVLAIGLLVDDAIVVVENVERLMRDQGLSPVAATEQSMREISSALVGVALVLSAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           + FFGG      R F+IT+  S+L+S+  A+++  A+   +                  +
Sbjct: 457 MAFFGGSTGVIYRQFSITIVSSMLLSVVVALTLTPALCAALLKPAAHTPSNGNGFFARFN 516

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               +        +A        +     ++  +  +  L   G     + +G + +   
Sbjct: 517 RGYENLQQRYTGRVAHVITGPWRYLALYGLVIVVMGVLFLRLPGGFLPNEDQGDVMVQFT 576

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                  +      E ++   +S +  + E  F++      G           +K     
Sbjct: 577 LPAGATETRTSKVGERIEHYFLSEEKDNVEAIFVISGFNFSGSGQNAGMAFVALKNWSQR 636

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               ++         +    +    +  +
Sbjct: 637 PGSANSSTAIAHRAMQALSAIRDAQVFTM 665



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    + +        +  +     +++A    ++    + T  +P 
Sbjct: 261 VRLGDVARVELGNEDYTTTTRLNGHPAAGIAVMLSSGANALATAERVKAKVAEFTPQMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +         +  + + +  +  +   +++ +++  +     L     + + +  T
Sbjct: 321 GYEVSYPKDSTDFIKVSVEEVVQTLFEAIALVVLVMFLFLQNLRATLIPAVAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A+FG   N   +  ++  IG  V+D +VV + +     +    +S     ++S+ E
Sbjct: 381 FGVLAVFGYSINTLTLFGMVLAIGLLVDDAIVVVENV--ERLMRDQGLSPVAATEQSMRE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
                V  ++      LPMA +GGS       F+I     IV +   S+ +A  +
Sbjct: 439 ISSALVGVALVLSAVFLPMAFFGGSTGVIYRQFSIT----IVSSMLLSVVVALTL 489



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 59/160 (36%), Gaps = 7/160 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             +  + I  +  L    +   W      +  + L +   +    L G+E ++    A+LT
Sbjct: 877  SLYAMSI-LVVFLCLAALYESWSIPFSVMMVIPLGVVGAVLAATLRGLENDVYFQVALLT 935

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             IG S  + +++ +   +    Y    +  +   +     L   + TS+A    V P+AV
Sbjct: 936  TIGLSAKNAILIVE-FAE--AAYRRGATLYEAALEGARTRLRPVLMTSLAFIAGVFPLAV 992

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G +   S    +  G + A   +IF+     + +  
Sbjct: 993  ATGAGANSRISIGSGIVGGTLTATVLAIFLVPMFFVLVRR 1032


>gi|260187599|ref|ZP_05765073.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           CPHL_A]
 gi|260205907|ref|ZP_05773398.1| preprotein translocase subunit SecF [Mycobacterium tuberculosis
           K85]
 gi|289448235|ref|ZP_06437979.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           CPHL_A]
 gi|289575294|ref|ZP_06455521.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           K85]
 gi|289421193|gb|EFD18394.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           CPHL_A]
 gi|289539725|gb|EFD44303.1| preprotein translocase subunit secF [Mycobacterium tuberculosis
           K85]
          Length = 442

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 67/296 (22%), Positives = 133/296 (44%), Gaps = 11/296 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    G+S      +I  +   G  +GIDFKGG  +           V      +L  
Sbjct: 62  GRRRLWFGVSGAIVAVAIASIVFRGFTFGIDFKGGTTVSFPRGSTQVAQVEDVYYRALGS 121

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTEIVGP 659
              S        +  V+++ +   S    ++ + + +          P     +   V  
Sbjct: 122 EPQSVVIVGAGASATVQIRSETLTSDQTAKLRDALFEAFGPKGTDGQPSKQAISDSAVSE 181

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++ +K ++ +++  + + +YI +R++ Y  + AIT ++ D+T T G ++L G E  
Sbjct: 182 TWGGQITKKAVIALVVFLVLVALYITVRYERYMTISAITAMLFDLTVTAGVYSLVGFEVT 241

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D V+V+D++ +N     +TT  +F +  + +IN+T  RS+ TS+
Sbjct: 242 PATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTFMRSINTSL 301

Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + VL +      + G   +   A+    GI++   SSIF A P+L+ + +   
Sbjct: 302 IGVLPVLTLMVVAVWLLGVGTLKDLALVQLIGIIIGTYSSIFFATPLLVTLRERTE 357


>gi|188528336|ref|YP_001911023.1| preprotein translocase subunit SecF [Helicobacter pylori Shi470]
 gi|188144576|gb|ACD48993.1| preprotein translocase subunit SecF [Helicobacter pylori Shi470]
          Length = 323

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 157/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V  ++   
Sbjct: 1   MELFKQTRILNFMRYSNYGVVVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYSQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEMLI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|84386226|ref|ZP_00989255.1| protein translocase subunit SecD [Vibrio splendidus 12B01]
 gi|84378996|gb|EAP95850.1| protein translocase subunit SecD [Vibrio splendidus 12B01]
          Length = 599

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 162/509 (31%), Positives = 271/509 (53%), Gaps = 39/509 (7%)

Query: 33  DRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
              P  +       I LGLDLRGG   +LEVD +   +   Q   DE+ S ++       
Sbjct: 114 PAAPKWLTDMGFAPIQLGLDLRGGVQFLLEVDMEPVYHAQAQAMVDEITSEVR-----YA 168

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
             + + N++   F      E     +                   L   ++K +++  S+
Sbjct: 169 RGKVVNNQVQFDFRTDADFEKAQKLIRQEF------------PQWLRNRSDKSLTLTQSE 216

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
                + +  ++Q+++I+R RI+++GI+E++IQR G  RI I+LPG QDP+  + ++G T
Sbjct: 217 EEQRTLRNLTVQQNLQIMRSRIEELGITEASIQRQGESRIRIELPGVQDPAAAKDVIGAT 276

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           A ++F+ V  N ++       + L+DSDGN+ +V+ K  +SG H+  A +          
Sbjct: 277 ASLAFYSVYDNATRS-----TQTLKDSDGNRVVVDRKAVLSGEHIIDARSGIGEMG-SAE 330

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPSGKA 317
           V+I+ D  G ++  E +R NIGKP+A V                        Q+    + 
Sbjct: 331 VNITLDSSGGKKMSEFSRHNIGKPMATVYSEYSRDRAGNSKQDSEVISVANIQSQLGSRF 390

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           +I+G  ++  A  LA +LRAGSL   + I+EER +G  LG++++  G  A+  GL L + 
Sbjct: 391 RITGAGSLADAQELALLLRAGSLTAPVTIIEERTIGPSLGAENVTNGFAALALGLGLTLT 450

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNE 436
           FM + Y + G VA+ ++ +N+     L++LL  A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 451 FMALWYRRLGWVANCALVVNMTTLFGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFE 510

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           RIR++ ++ +S   S+D GF  A+S+IFD+N+T +I  V L+  G G ++GFA+T+GL +
Sbjct: 511 RIRDKMKEGRSFASSIDRGFDSAFSSIFDANVTTMIVAVALYTIGNGPIQGFALTLGLGL 570

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           L SMFT I   RA++  +    +   + I
Sbjct: 571 LTSMFTGIFASRAIINLVWGRDQRHDVRI 599



 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 90/240 (37%), Gaps = 5/240 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    +       D    +    ++ L       G           +  +   +    TI
Sbjct: 360 SEYSRDRAGNSKQDSEVISVANIQSQLGSRFRITGAGSLADAQELALLLRAGSLTAPVTI 419

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +GP +  E +  G   + +     L ++ + ++      A   L++++T   G  
Sbjct: 420 IEERTIGPSLGAENVTNGFAALALGLGLTLTFMALWYR-RLGWVANCALVVNMTTLFGLI 478

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           AL  G    L  +A ++  +G +V+  V++++R+R  MK      SF   ID+  +    
Sbjct: 479 ALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKMKE---GRSFASSIDRGFDSAFS 535

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                ++   I  + +   G   I  FA+ +  G++ +  + IF +  I+  ++    ++
Sbjct: 536 SIFDANVTTMIVAVALYTIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRDQRH 595


>gi|319796111|ref|YP_004157751.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Variovorax paradoxus EPS]
 gi|315598574|gb|ADU39640.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Variovorax paradoxus EPS]
          Length = 1054

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 72/630 (11%), Positives = 166/630 (26%), Gaps = 51/630 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G +        Q  + ++P   P               +V+ V  
Sbjct: 8   RPIFAWVIALFILVMGGVAI-----TQLPISQYPPVAPPA-------------IVINVAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+      +   +    G+         +    IT+SF      +     V  
Sbjct: 50  PGASAQTLEDSVLSVIEREMNGSPGLIYMESVAQADGTGTITISFEAGTNDDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L     +  +     +   ++    + D      +       R  + ++   
Sbjct: 110 RLSRATPRLPAAVTQQGVRVDKSRNNFLMFVMLSSDNPDLDPVALGDYAARNVVPELQRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L+    +   ++      N        G        
Sbjct: 170 VGVGQAQLFGS-ENAMRIWIDPAKLQGFNLSATDVNNAIRAQNAQVSSGTIGDLPNIPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    +++ +              +    +                 +       
Sbjct: 229 AIAATVVVNGQLANVE-------------QFKNIVLRANTDGSTVRLKDVARVELGGQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   + +        L           +   +      
Sbjct: 276 ATSARLNGVPAVGIGVQPTPNGNALQSAKAIRAKMTELARFFPQGVKWDIPYDSSRFVQI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   ++ ++    + + ++ T A L  LG ++ + ++
Sbjct: 336 SITEVVKTLLEAVALVFVVMFLFLQNWRYTIIPTIVVPIALLGTFASLLALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   V 
Sbjct: 396 FGMVLVIGIVVDDAIVVVENVERIMSEEGLSPLEATRKAMKQISGAIIGVTVVLISVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           L FF    G   R F+  M  SI  S F A+S+  A+   +           +       
Sbjct: 456 LAFFAGSTGNIYRQFSAVMVTSIAFSAFMALSLTPALCATLLKPVEAGHHHEKRGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    RA  + +    +    +             + +G I + V
Sbjct: 516 NRGFSRTAKGYESLVARILRRAARYLIIYVAIIGAVAYTYTHLPSSFLPQEDQGNIIVNV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                       S ++ ++   +       
Sbjct: 576 QLPPGATQERALSVMQQVEGFILKQPEVQS 605



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/210 (11%), Positives = 78/210 (37%), Gaps = 6/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                 G+++   + +     ++    P     +      +  +  I + +  ++ +   
Sbjct: 291 VQPTPNGNALQSAKAIRAKMTELARFFPQGVKWDIPYDSSRFVQISITEVVKTLLEAVAL 350

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + + +++  + W + +     + + +  T       G   N+  +  ++ +IG  V+D +
Sbjct: 351 VFVVMFLFLQNWRYTIIPTIVVPIALLGTFASLLALGFSINVLTMFGMVLVIGIVVDDAI 410

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           VV + +     +    +S  +   K++ +  G  +  ++      +P+A + GS      
Sbjct: 411 VVVENV--ERIMSEEGLSPLEATRKAMKQISGAIIGVTVVLISVFVPLAFFAGSTGNIYR 468

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            F+  M   I  +A  ++ +   +   +  
Sbjct: 469 QFSAVMVTSIAFSAFMALSLTPALCATLLK 498



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 70/217 (32%), Gaps = 8/217 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L +              +          GD+ A       + +       L      E  
Sbjct: 797  LSAFATTKWVTGATQTVRYNGYPAIRISGDAAAGFSTGAAMAEMEKLASQLPQGFGFEWT 856

Query: 658  GPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
            G     +L   + I+    + +A+ + +   ++ W   L  I  + L +   L    L  
Sbjct: 857  GQSREEKLAGSQAIILYGFAILAVFLCLAALYESWSIPLAVILVVPLGVLGVLLATMLRA 916

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               ++     ++T+IG S  + +++ +  +    L        +    + +      V T
Sbjct: 917  YSNDVYFQVGLITIIGLSAKNAILIIEFAKD---LQAQGKGIVESALAAAHLRFRPIVMT 973

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
            S+A  + V+P+ +    G +   +    +  G+V   
Sbjct: 974  SLAFGLGVVPLVIASGAGSASQRAIGTGVLGGMVTGT 1010


>gi|288960168|ref|YP_003450508.1| hydrophobic/amphiphilic exporter-1 [Azospirillum sp. B510]
 gi|288912476|dbj|BAI73964.1| hydrophobic/amphiphilic exporter-1 [Azospirillum sp. B510]
          Length = 1033

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 68/541 (12%), Positives = 152/541 (28%), Gaps = 39/541 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +  IG++        +  +  +P                      +  
Sbjct: 9   RRPVLATVMSLALMLIGIVS-----YQRLSVREYPRIDEPVVT---------VETTYKGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + ++   +     R  +++ITL F   R  +  A  V   +  
Sbjct: 55  SAQIIESQVTQTLEDSLAGIEGIDVMSSISRAEKSQITLRFRLDRNVDVAASDVRDRVGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +  + ++         I+    + D      +E +    R   D++       
Sbjct: 115 VRAALPSEIDEPVIAKVEADAQPIIYLAFSSD--RHSPLEVTDFADRYVKDRLQNLPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP R+     T   +       N               +  ++ 
Sbjct: 173 QVRIFGERRFAMRLWLDPQRMAAYRVTPQDVETALRRQNVEIPAGRVESVAREFTVVSET 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                       I   +                         
Sbjct: 233 DLRTPAEFEA--------------------IILRDDSGYLVRLRDVGRAELGALDERVSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     +        +RA         V   +      S   
Sbjct: 273 RFNGRGAVAIGVVKQSTANPLDVSKAVNDALPRIRAALPEGMGVDVAYDSSVFIAKSIDA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F  +   +  LV   +I +++I   AL+   G ++   ++  +V
Sbjct: 333 VFHTIFEAIVLVVLVIFFFLRSLRATLVPLVTIPVSLIGGFALMYAFGFSINTLTLLSMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I++ E I     +  S F +   G       +    IT       + F  
Sbjct: 393 LAIGLVVDDAIVMLENIFRYVEEGMSPFQAALKGSREIGFAVIAMTITLAAVYAPIGFMT 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+T+  ++++S F A+++   M   +++++    +    + R        
Sbjct: 453 GRTGRLFTEFALTLAGAVIVSGFVALTLSPMMCSKLLKHEAKHGLLYRAIERLLEGMTYG 512

Query: 539 A 539
            
Sbjct: 513 Y 513



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/207 (12%), Positives = 73/207 (35%), Gaps = 9/207 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    L  ++  + E + +    ++ +   K    +       +++  + +  ++   
Sbjct: 296 SKAVNDALPRIRAALPEGMGVDVAYDSSVFIAKSIDAVFHTIFEAIVLVVLVIFFFL--- 352

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  + T+ + +         FG   N   + +++  IG  V+D +V+ + +   
Sbjct: 353 RSLRATLVPLVTIPVSLIGGFALMYAFGFSINTLTLLSMVLAIGLVVDDAIVMLENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
            +     +S      K   E     +  ++       P+    G        FA+ +A  
Sbjct: 410 FRYVEEGMSPFQAALKGSREIGFAVIAMTITLAAVYAPIGFMTGRTGRLFTEFALTLAGA 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++V+   ++ ++  +   +    AK+ 
Sbjct: 470 VIVSGFVALTLSPMMCSKLLKHEAKHG 496



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 62/161 (38%), Gaps = 7/161 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I++   + + +  +F+ +      + T+ L +T  L    + G   N+ +   ++TL+G 
Sbjct: 859  ILALAFIYLVLAAQFESFIDPFVIMLTVPLSMTGALAALQMSGGTMNVYSQIGLVTLVGL 918

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++ +      +L       R  ++++    L   + T+ A  +  +P+A     
Sbjct: 919  ITKHGILIVEFAN---QLQRAGTDIRKAVEEAAVLRLRPILMTTGAMVLGAVPLAYAEGA 975

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G     +    +  G+ +    ++F+   +  ++       
Sbjct: 976  GAESRQAIGAVIVGGMTLGTLLTLFVVPTVYSYLARKAPMR 1016


>gi|187478949|ref|YP_786973.1| multidrug efflux system transmembrane protein [Bordetella avium
           197N]
 gi|115423535|emb|CAJ50071.1| multidrug efflux system transmembrane protein [Bordetella avium
           197N]
          Length = 1074

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 78/688 (11%), Positives = 175/688 (25%), Gaps = 42/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L       P   + ++P   P                      
Sbjct: 8   RPIFAWVVALFILLAGILAI-----PNMPVSQYPDVAPPAI---------SITATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  +  K             Q +IT +F      +     V   +  
Sbjct: 54  AKEVAETVTSIIEDELNGAKGLLYYESVSDSNGQAQITATFRPGTDPDLAQVDVQNRISN 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L     +  L         ++    +           +  I R   + I       
Sbjct: 114 VTAQLPAAVTQQGLKYEQTSAGFLLFVTLSSTDGSLDQAALADYITRNIKNPISRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L     +   ++      N    G   G      +     
Sbjct: 174 QFQLFAAPR-AMRIWVDPQKLVGYNLSMQDVNQAIASQNVLVSGGTIGAPPNPAAVRVTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++S +                   +        R        I         G 
Sbjct: 233 TVTANGQLSTVE-------------GFGGIVLRANTDGSRVLLRDVARIEVGSDNYQFGA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T E      A L           +          S   
Sbjct: 280 RLNGKPTAAFAIVLSPDANALQTAEGIRKEMAQLARYFPDNIKYEIPYDTAPYVKVSIEK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   ++ L+    + + ++   A++ +LG ++ + ++  +V
Sbjct: 340 VIHTLVEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMMGAFAVMLVLGLSINVLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    I    +  +   + L F 
Sbjct: 400 LAIGILVDDAIVVVENVERIMATEGLPPKEATAKAMPQITGAIVGITLVLVTVFLPLAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530
            G      R FA+ M +SI  S F A+S   A+   +          +K         + 
Sbjct: 460 SGSVGVIYRQFAVAMSVSIFFSAFLALSFTPALCATLLKPIPKGHHNEKKGFFGWFNRNF 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                             G  + +   +  +       L      +      +       
Sbjct: 520 EATTHHYQNWISRVLHKGGRMMLVFALLVVLLGWLYIRLPSSFLPEEDQGYVISNIELPS 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +     +E ++  +  F      +N +    +    +   T ++             + 
Sbjct: 580 GASANRTIEVIEEVEDYFSKLPTTQNIVAVQGFSFNGNGLNTALV--FTTLKDFADRKAP 637

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAI 678
             + + +     + L       ++ + +
Sbjct: 638 QDSAQAIAGAAFQRLFMGIKDAMVFTVV 665



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 81/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +           +     +++     +     ++    P +   
Sbjct: 264 DVARIEVGSDNYQFGARLNGKPTAAFAIVLSPDANALQTAEGIRKEMAQLARYFPDNIKY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I K I  ++ + + + + +++  +   + L     + + +       
Sbjct: 324 EIPYDTAPYVKVSIEKVIHTLVEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMMGAFAVM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G+  N+  + A++  IG  V+D +VV + +     + T  +  ++   K++ +  G 
Sbjct: 384 LVLGLSINVLTMFAMVLAIGILVDDAIVVVENV--ERIMATEGLPPKEATAKAMPQITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  ++      LP+A   GSV      FA+ M+  I  +A  ++     +   +  
Sbjct: 442 IVGITLVLVTVFLPLAFMSGSVGVIYRQFAVAMSVSIFFSAFLALSFTPALCATLLK 498



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 92/281 (32%), Gaps = 9/281 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S   S         +               VL     +       L S      S 
Sbjct: 749  TAVGSAYLSKFPNLGRMQNIWVQADAPYRMHMEDVLNLNARNKDGGMVPLSSFVTAKWSQ 808

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-R 667
                  +          G + A     E + +    +  L      E  G      L   
Sbjct: 809  GPTQVVRYNSYESVRIGGSAAAGYSTGEAMTEMENLVAKLPPGFGYEWNGLSYQERLAGN 868

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            + ++ + ++ + + + +   ++ W      +  + L +   +G  +L G+  ++     +
Sbjct: 869  QAVILMALALLVVFMVLAALYESWAIPASVMLVVPLGMLGAVGLVSLMGMSNDVYFQVGM 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG +  + +++ +  +     Y       +   ++        + TSMA  + VLP+
Sbjct: 929  VTVIGLAAKNAILIIEFAKD---HYARGNGLYESAVEAARLRFRPILMTSMAFILGVLPL 985

Query: 787  AVWGGSVI---GSFAIPMAFGIVVAA-SSSIFIAAPILLFI 823
            A+  G+      +  + +  G++ A   + IF+ +  ++ +
Sbjct: 986  ALATGASAASQRAVGLGVLGGMLAATPFAVIFVPSFFVVVM 1026


>gi|119775630|ref|YP_928370.1| protein-export membrane protein SecF [Shewanella amazonensis SB2B]
 gi|119768130|gb|ABM00701.1| protein-export membrane protein SecF [Shewanella amazonensis SB2B]
          Length = 301

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/288 (28%), Positives = 143/288 (49%), Gaps = 7/288 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              + F R R     IS++  + S+  + T G N G+DF GG    V       +  V +
Sbjct: 1   MKTLNFTRFRHLMTLISVVALLLSVLAISTRGFNLGLDFTGGAFAEVAMATDTRIDEVET 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L  L  G IS    +  +  +                L    + + ++ P   + + + 
Sbjct: 61  ALAHLGDGSISVVATEPGRFLIRM------GGTLDAHTLADFNQSLLQLDPTMQVLDRDS 114

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           V P++ +EL  +G + ++I+ + +L Y+ +RF+W  A GA+  L+ D+   LG FAL G+
Sbjct: 115 VSPQVGQELFEQGGLALLIAMLCILGYLSLRFEWRLAAGALVALVHDVVLVLGVFALTGM 174

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT +AAVL ++GYS+ND +++ DR+R+ +     S    ++ D +I +T  R++ TS
Sbjct: 175 EFNLTVLAAVLAVLGYSLNDSIIIADRIRELLLARPKSR-LTEVNDAAIVQTFSRTMVTS 233

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               I+V  + + GG+ +  FA+ M  GIV    SS+ +   +   + 
Sbjct: 234 GTTLITVGALWLLGGAPLEGFAVAMFVGIVTGTFSSVSVGTVLPELLG 281


>gi|302187589|ref|ZP_07264262.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae 642]
          Length = 1040

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/632 (11%), Positives = 167/632 (26%), Gaps = 52/632 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPSLPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEDELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIYTLNYKDGAANKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPAS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSAVHLSDVARVAVGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVEQRLTELSVNFPEGVGFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGKFTDRYERISSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            V        S      + L+   +S +    
Sbjct: 575 DVQLPPGATRSRTDLTAQLLENYMLSREATGA 606



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R +E    +++   P 
Sbjct: 262 VHLSDVARVAVGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVEQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVGFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGLPNDVYFKVGLITIIGLASKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLF-IYDWRAKN 830
            A    + +      + +   R K 
Sbjct: 1009 ATLLGVVLVPIFFAWVLSVLRRKP 1032


>gi|303327877|ref|ZP_07358317.1| protein-export membrane protein SecF [Desulfovibrio sp. 3_1_syn3]
 gi|302862238|gb|EFL85172.1| protein-export membrane protein SecF [Desulfovibrio sp. 3_1_syn3]
          Length = 366

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 97/345 (28%), Positives = 164/345 (47%), Gaps = 49/345 (14%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISI-LFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
             F  I     I F+  R W  GISI L        L+ +GL  GIDF GG+ + V  ++
Sbjct: 1   MGFAFIKHDTQIDFIGWRHWAYGISIVLLLAGLASALWGNGLKMGIDFAGGVIVQVQFDK 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFD-GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           PV+   ++ +L+   +  I+ Q F  G +++L+R         +  R   +         
Sbjct: 61  PVNDEALKKSLDIPALPGITTQRFGEGGRDYLLRFSSAENADASALRTNVVNALASAFPD 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----------------- 689
             + I   E+VGPK+  +L  K +  +  + + + +YI  RF+                 
Sbjct: 121 NAAQILRLEVVGPKVGDDLTNKALSALYYAVLLIAVYISGRFEQRWMAGAIMAAALWGGM 180

Query: 690 -----------------------------WYFALGAITTLILDITKTLGFFALFGIEFNL 720
                                          FALGA+  L+ D+  T G  ++  +E +L
Sbjct: 181 YVLSFTGLGMGWLVLFALAITMVVCFFLKLNFALGAVVGLLHDVFITAGLLSIMDVEIDL 240

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +AA+LTL+GYS+ND ++VYDR+R+N++     +    LI++SIN+TL R++ TS   F
Sbjct: 241 NVMAALLTLVGYSLNDTIIVYDRLRENLRAAPK-VDLASLINRSINQTLSRTILTSGTTF 299

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++ L + + GG VI  FA+ M  G+ +  +SSI++++ ILL + D
Sbjct: 300 VATLSLFLLGGGVIHDFALTMLIGVFIGTASSIYVSSAILLGLGD 344


>gi|239978428|ref|ZP_04700952.1| preprotein translocase subunit SecF [Streptomyces albus J1074]
 gi|291450324|ref|ZP_06589714.1| preprotein translocase subunit SecF [Streptomyces albus J1074]
 gi|291353273|gb|EFE80175.1| preprotein translocase subunit SecF [Streptomyces albus J1074]
          Length = 378

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/301 (25%), Positives = 137/301 (45%), Gaps = 14/301 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+  R +   +SIL +I +I  L   GL+ GI+F+GG                    +
Sbjct: 18  YDFVGKRKFWYAVSILITITAIAGLAVRGLSMGIEFQGGAVFTTPKTSVSAPQAETIAED 77

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +     +  +  +G     +           +  +   +     +I          +VGP
Sbjct: 78  AAGHDALVQELGNGGLRIQISNVDTEKSDEIRDTLSRELDVAADDINAD-------LVGP 130

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++  K   G+ +  I ++IY+ I F+W  AL A+  LI DIT T+G +AL G E  
Sbjct: 131 SWGSQIANKAWTGLGVFMILVVIYLAIAFEWRMALAALIALIHDITITVGVYALVGFEVT 190

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777
           +  V  +LT++GYS+ D VVV+D ++++ K  T     ++ ++ ++SIN TL RS+ T+ 
Sbjct: 191 VGTVIGLLTILGYSLYDTVVVFDSLKESSKDATKQTRWTYSEIANRSINATLVRSINTTA 250

Query: 778 AAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A + V  +   GG      ++   ++ +  G+   A SSIFIA P++    +   +   
Sbjct: 251 VALLPVGALLFIGGGFLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADFKETEPQMKA 310

Query: 833 I 833
           +
Sbjct: 311 L 311


>gi|212704779|ref|ZP_03312907.1| hypothetical protein DESPIG_02843 [Desulfovibrio piger ATCC 29098]
 gi|212671741|gb|EEB32224.1| hypothetical protein DESPIG_02843 [Desulfovibrio piger ATCC 29098]
          Length = 1066

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/691 (11%), Positives = 196/691 (28%), Gaps = 45/691 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R      ++  +I  +G L      +    + ++P  +P               + + V
Sbjct: 11  LRRPILSSVISIVITLVGALA-----MKALPIAQYPELVPPT-------------VNVTV 52

Query: 61  DEDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQNK----ITLSFADSRFKENIADK 114
                    +       L   +   E +   +           I + F+     +     
Sbjct: 53  FYPGASAETIAGTVLAPLEVNINGVENMLYMTSTASSGSGSGSINVYFSLGTDPDMALVN 112

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           V   +    + L    +   +  T      + +           A+     +     D++
Sbjct: 113 VNNKVNLAQTTLPETVRLQGVQVTKRSPAMLQIIALYSPDGRYDAVYLHNYMQVNVADEL 172

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +   +     P +L +   T  +++      N+       G   + 
Sbjct: 173 KRVPGVGDVNVFGYMDYSMRIWLVPDKLAKYGVTVGEIAAAIQEQNSQFSPGRLGDAPMP 232

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           D+    + ++ K  ++                +    I      +          I    
Sbjct: 233 DTAQLSWQIDTKGRLA-------------TPQEFGEIIIRTGEDSAMLRLKDVARIEMGG 279

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                       V            +   T E        L           +       
Sbjct: 280 KDYSVSSEYNGMVTRAMGIYLLPGANAIATGEAVTARMQELSKNFPEGIDYKIVVDTNDF 339

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            + S +    T      LV +V+F+ +   +  L+   ++ +++I T A +  LG T+  
Sbjct: 340 VMESINEVVHTLVEAMILVFLVVFIFLQNWRATLIPCIAVPVSIIGTFAGMFALGYTINT 399

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +             +     S   + +    +     
Sbjct: 400 LTLFGMVLAIGIVVDDAIVVLENVERIMSTEHLPPKEATAKAMSEVTAPVIAIVLVLCAV 459

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + + F G   G   + FAIT+ +S+++S   A+++  A+   +++          P   
Sbjct: 460 FIPVSFMGGLAGQMYKQFAITISVSVVLSGIVALTLTPALCSLLLKPHAHDHQPAKPFVV 519

Query: 531 FFLIPDCIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           F         +++R     +  G+    LF    + L+F   +  G       Q  +L  
Sbjct: 520 FNYFFGKTTHRYVRTVRFIKDHGLISMALFGCMIVSLVFLFRVVPGGLVPNEDQGYILGM 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             +D   V++    +    +     +   + ++ L      S++           +    
Sbjct: 580 TILDDGAVQNRTRDVTRVVMDVLRKNPAVDTVMTLNGLDITSMSSKSNYGTFFAVLKPWS 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             +T +++          +       V I  
Sbjct: 640 ERTTPESSASAISTKVLGVTMMQPEAVTIGF 670



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 78/205 (38%), Gaps = 8/205 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
                 A T  ++ + K   E +    + +T     +   E++   +  +I+  + + I+
Sbjct: 306 AIATGEAVTARMQELSKNFPEGIDYKIVVDTNDFVMESINEVVHTLVEAMILVFLVVFIF 365

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L     + + I  T       G   N   +  ++  IG  V+D +VV + 
Sbjct: 366 LQ---NWRATLIPCIAVPVSIIGTFAGMFALGYTINTLTLFGMVLAIGIVVDDAIVVLEN 422

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIP 800
           +     + T  +  ++   K+++E     +   +      +P++  G   G +   FAI 
Sbjct: 423 V--ERIMSTEHLPPKEATAKAMSEVTAPVIAIVLVLCAVFIPVSFMGGLAGQMYKQFAIT 480

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  +V++   ++ +   +   +  
Sbjct: 481 ISVSVVLSGIVALTLTPALCSLLLK 505



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 62/147 (42%), Gaps = 8/147 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +++ W   L  +T +   +   L    L  +  ++    A++TL+G 
Sbjct: 890  VLALVMVFLILAAQYESWSLPLAVLTAVPFGVFGALVATWLRDLSNDVYFQVALVTLVGL 949

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +   +  +      S       +        V TS+A  +  +P+A+    
Sbjct: 950  AAKNAILIVEFAVEAWRG---GRSLDVAAMHAARLRFRPIVMTSLAFILGCVPLAISSGA 1006

Query: 790  GGSVIGSFAIPMAFGIVVAA-SSSIFI 815
            G +   +    +  G++ A   +++F+
Sbjct: 1007 GANSRHAIGTAVVGGMLAATCIATLFV 1033


>gi|170287873|ref|YP_001738111.1| protein-export membrane protein SecF [Thermotoga sp. RQ2]
 gi|170175376|gb|ACB08428.1| protein-export membrane protein SecF [Thermotoga sp. RQ2]
          Length = 293

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 145/293 (49%), Gaps = 4/293 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM      + IS++    SI  +FT G N+G++F GG ++ V            
Sbjct: 1   MRKEIDFMGKSKIFITISLILIAISIVSIFTKGFNFGVEFTGGSEIIVRFENKEVTENDI 60

Query: 596 SNLESLQIGDISF---QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
               S    + +           +     +Y            +   ++  E +    + 
Sbjct: 61  RAAISQISEEFANARIVEVRSAGDPSNVQKYSIIVPKTYEPDEKQKIQEEMEKLLSGKVV 120

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +   +    + E+ R     ++++ + +LIYI IRF++ F + A+  LI D+  T+GFF+
Sbjct: 121 SFNEISGTAAEEIRRGTWTAILVALVVLLIYITIRFRFIFGVAAVVALIHDVLITMGFFS 180

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG E N+ AVAA LTL+GYS+ND +V+ DR+R+NM+ Y    +  ++++ SIN+ L R+
Sbjct: 181 LFGYEINVAAVAAFLTLLGYSLNDTIVLSDRIRENMRRY-RGRNMVNIVNMSINQVLART 239

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + TS+  F  V  + ++ G+ +  FA  M  G +V   SS++IA+PI++    
Sbjct: 240 INTSLTTFFVVFVLLLFAGNAVKPFAFGMTVGTIVGTYSSLYIASPIIVKWTK 292


>gi|325521727|gb|EGD00479.1| putative cation/multidrug efflux pump [Burkholderia sp. TJI49]
          Length = 1047

 Score =  185 bits (468), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/557 (10%), Positives = 147/557 (26%), Gaps = 45/557 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I  +GL+       P+  + R+PS  P               + +   
Sbjct: 7   RRPVFAWVIALFIILLGLIAI-----PELPVARYPSVAPPT-------------VTITAT 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +    Q +IT++F            V 
Sbjct: 49  YPGATPQTMSDSVLSLIERELSGVRNLLYFESSADTSGQAQITVTFKPGTDPAMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V  +L    ++N ++  +     ++      +         +  + R  ++ +  
Sbjct: 109 NKLKSVEPRLPPVVRQNGVIVQSAATGFLLFVGLKSESGRYDENALADYMARNVVEDLRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP +L     +   ++      N        G       
Sbjct: 169 VEGVGKVQLFGS-EQAMRIWVDPQKLITYGLSMNDLTTAVSQQNVQIAPGSLGAAPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +        +        +      
Sbjct: 228 QRVTVPLTAQGQLT-------------TPEQFAKIVLRANANGSKVVLGDVARVELGPQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T +       M+           +         
Sbjct: 275 FTFVNSENGKPATFAGVQLAPGANAVKTAQAVRDQLDMIAKTMPAGMTYSIPFDTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 335 ISIEKVVHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAMLGTFTVMLLTGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVLENVERLMVEEGLSPKDATLKAMKEITGAIIGITLVLTAVFL 454

Query: 476 VLFFFGG-------GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            +    G             A+++  S L+++    ++   M+  I      K       
Sbjct: 455 PMAMSSGSVGVIYQQFTLSMAVSILFSALLALTLTPALCATMLKPIEHGHHEKRGFFGWF 514

Query: 529 SRFFLIPDCIAIQFMRA 545
           +R F          +  
Sbjct: 515 NRRFDRLTQWYETRVGR 531



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 80/230 (34%), Gaps = 14/230 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q              F         ++V   + +      I + +
Sbjct: 258 SKVVLGDVARVELGPQSFTFVNSENGKPATFAGVQLAPGANAVKTAQAVRDQLDMIAKTM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I K +  ++ + + + + +++     R+    A+ A   + 
Sbjct: 318 PAGMTYSIPFDTAPFVKISIEKVVHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAM- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T     L G   N+  +  ++  IG  V+D +VV + +     +    +S +D  
Sbjct: 377 ---LGTFTVMLLTGFSINVLTMFGMVLAIGIIVDDAIVVLENV--ERLMVEEGLSPKDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
            K++ E  G  +  ++      LPMA+  GSV      F + MA  I+ +
Sbjct: 432 LKAMKEITGAIIGITLVLTAVFLPMAMSSGSVGVIYQQFTLSMAVSILFS 481



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L +   L    L G+  ++     +
Sbjct: 865  QAPMLMALSMVVVFLVLAALYESWAIPLSVMLVVPLGLIGALAAVMLRGLPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L        +   +S    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAK---QLREEGKGLIEAAVQSSKLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             +  G       +    +  G++ A   +I
Sbjct: 982  VIASGASSETQHAIGTGVLGGMIAATVLAI 1011


>gi|206578026|ref|YP_002235939.1| multidrug efflux permease EefB [Klebsiella pneumoniae 342]
 gi|288932945|ref|YP_003437004.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
 gi|290511740|ref|ZP_06551108.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Klebsiella sp.
           1_1_55]
 gi|206567084|gb|ACI08860.1| multidrug efflux permease EefB [Klebsiella pneumoniae 342]
 gi|288887674|gb|ADC55992.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
 gi|289775530|gb|EFD83530.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Klebsiella sp.
           1_1_55]
          Length = 1035

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/687 (10%), Positives = 187/687 (27%), Gaps = 47/687 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P               + +   
Sbjct: 8   RRPVFAWVIAILIMLAGVLAI-----RTLPVGQYPDVAPPA-------------VKISAT 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   L+      +   L            S       IT++F      +    +V 
Sbjct: 50  YTGASAETLENSVTQVIEQQLTGLDHLLYFSSTSSSDGSVSITVTFEQGTDPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   S+L  + +++ +     +   +++         + + + S  ++    D +  
Sbjct: 110 NKVQQAESRLPSEVQQSGVTVEKSQSSFLLILAVYDKTNRATSSDISDWLVSNMQDPLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    DP++L       + +       N        G     ++
Sbjct: 170 VEGVGSLQVFGA-EYAMRVWMDPTKLASYSLMPSDVQSAIEAQNVQVSAGKIGALPSSNA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  +  +                 +    I   +             +      
Sbjct: 229 QQLTATVRAQSRL-------------QTPDQFKAIIVKSQADGSVVRLSDVARVEMGSED 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +   T        A  +            + +     
Sbjct: 276 YTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQGYDIAYPKDSTEFIK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   +
Sbjct: 336 ISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGTFGVLALFGYSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +    R        + +         +    +      +
Sbjct: 396 LFAMVLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F++T+  ++++S+  A+++  A+   ++ + K  +          
Sbjct: 456 PMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALLSHSKPHTKGFFGAFNRL 515

Query: 533 LIPDCIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                   Q        R   +  +      ++ L         +  +   ++ V    P
Sbjct: 516 WGRTEAGYQRRVLGGLRRGAVMMGAYALICGAMALAMWKLPGSFLPVEDQGEIMVQYTLP 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR--VLEMVKKKITEIV 646
              + VR+     Q+ D          + +  +         Q        +K       
Sbjct: 576 AGATAVRTAEVRRQVTDWFLTKEKANTDVIFTVDGFSFSGSGQNAGMAFVSLKNWSQRKG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
             +T Q   +   K    +    +  +
Sbjct: 636 DDNTAQAIALRATKELGTIRDATLFAM 662



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +    +          +  +     +++    +++    +    +P 
Sbjct: 261 VRLSDVARVEMGSEDYTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + I ++  +++  + +   L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LPMA +GGS       F++ +   ++++   ++ +   +   + 
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALL 498

Query: 825 DWRAKNAR 832
                + +
Sbjct: 499 SHSKPHTK 506



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 76/252 (30%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +               Q G  S   ++G   F ++ +   G S              
Sbjct: 786  VRGSDNSMTPFSAFATTHWQYGPESLVRYNGSAAFEIQGENAAGFSSGAAMDKMEKLADS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    + +++  + +     +   W      I  + L
Sbjct: 846  LPAGSTWAWSGISLQEKLASGQAMSLYAISILVVFLCLA---ALYESWSVPFSVIMVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        L G+  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAATLRGLSNDVYFQVALLTTIGLSSKNAILIVE-FAE--SAVDEGYSLSRAAI 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   V TS+A    VLP+A+    G +   +    +  G + A   ++F     
Sbjct: 960  RAAQTRLRPIVMTSLAFIAGVLPLAIATGAGANSRVAIGTGIIGGTLTATLLAVFFVPLF 1019

Query: 820  LLFIYDWRAKNA 831
             + +     +  
Sbjct: 1020 FVLVKRLFTRQR 1031


>gi|297181289|gb|ADI17481.1| preprotein translocase subunit secd [uncultured beta
           proteobacterium HF0130_04F21]
          Length = 622

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 171/520 (32%), Positives = 288/520 (55%), Gaps = 26/520 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L+ ++P++L +              + LGLDLRGG + +L++D +  +   L+  
Sbjct: 109 VVALNLVSSVPDWLSRLKA---------LPMYLGLDLRGGVYFMLQIDLESAIFSKLETL 159

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             ++RS L+K  I    +R+  N I +        + I++++   L+    +++ +P   
Sbjct: 160 KSDVRSELRKSRIRHSGVRREDNTIIVK----ASSQEISEEIRKSLKTNFPEISWNPSNL 215

Query: 134 LLVTTTEKEISI--VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
              T  +    +   LS+ NI ++  +A++Q++  +  R++++G+SE  IQ+ G  RI++
Sbjct: 216 ETSTEDKSLFFVTGTLSEENIFEIRENALKQNITTLSNRVNELGVSEPVIQQQGLDRIVV 275

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------DSDGNQYLVED 245
           QLPG QD ++ + +LG  A +    V  +      +   +  +      D +GN+  ++ 
Sbjct: 276 QLPGVQDTAKAKDILGRIASLEIRLVDDSPETFSAISEGKIPKRIEIFLDKNGNELALKK 335

Query: 246 KVEISGIHLNGATANFD-PKTHKPVVDISFDEMGARRFFEVTRDNIGKP----LAVVLDG 300
           ++ ++G  L  A A FD     +P V ++ D  G R F +VTR N+GK     L      
Sbjct: 336 EILLTGESLTDAQAGFDSQNPIEPAVHLTLDGKGKRVFRDVTRKNVGKRLAILLVEKGKS 395

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            V+TAPVI   IP G+ QISG  +   A   A +LRAGSL   + I+EER +G  LG+D+
Sbjct: 396 EVITAPVIRSEIPGGRVQISGQMSTVEAADTALLLRAGSLAAPMEIIEERLIGPSLGADN 455

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           + +G  + + G V I +F+I+ Y  +G+ +  ++ LN+ L +ALLSLL ATLTLP IA +
Sbjct: 456 VSQGFQSTLWGFVAITIFIIIYYMIFGMFSALALSLNLTLLIALLSLLQATLTLPGIAAM 515

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+A+DSN+L+NERIREE R   +   ++  G+ RA++TI DSNIT LIA + L  F
Sbjct: 516 ALTLGMAIDSNVLINERIREEIRAGATPHIAISAGYDRAWATILDSNITTLIAGIALLVF 575

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G G +RGFA+   L IL SMF+++   R ++      +K 
Sbjct: 576 GSGPIRGFAVVHVLGILTSMFSSVFFSRGLVNIWYGSRKK 615



 Score =  115 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 52/115 (45%), Gaps = 3/115 (2%)

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                L  +AA+   +G +++  V++ +R+R+ ++      +    I    +      + 
Sbjct: 504 QATLTLPGIAAMALTLGMAIDSNVLINERIREEIRA---GATPHIAISAGYDRAWATILD 560

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +++   I+ + + V+G   I  FA+    GI+ +  SS+F +  ++   Y  R K
Sbjct: 561 SNITTLIAGIALLVFGSGPIRGFAVVHVLGILTSMFSSVFFSRGLVNIWYGSRKK 615


>gi|289641357|ref|ZP_06473522.1| protein-export membrane protein SecF [Frankia symbiont of Datisca
           glomerata]
 gi|289508819|gb|EFD29753.1| protein-export membrane protein SecF [Frankia symbiont of Datisca
           glomerata]
          Length = 415

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 138/306 (45%), Gaps = 11/306 (3%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L  +   + F+  R      S L  I  +  +   G + GIDFKGG      + 
Sbjct: 1   MSWASRLYRNQSHVDFVGRRRIWYAFSALLLIVCVASMLIRGFSLGIDFKGGALFQFPSG 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               ++V    L S  +        + + +  +R+Q     +   + +   ++K+     
Sbjct: 61  GR-SVAVAEEALSSAGVNPADSVIQELDTSQQLRVQTPTLSAEQASALQNTIEKRFEVAP 119

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                 +   VG      +  K + G+ +  + +++Y+ +RF+W  A+ A+T L+ D+  
Sbjct: 120 TDI---DISTVGASWGSTITSKALQGLAVFLVLVVVYLSVRFEWKMAVAAMTALVHDLVI 176

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKS 764
           T+G ++L G +   + V A+L ++G+S+ D VVV+DR+R+N    +T    ++ +  + +
Sbjct: 177 TMGVYSLVGFQVTPSTVIALLAILGFSLYDTVVVFDRVRENTAGMSTTNRRTYAEATNDA 236

Query: 765 INETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +NETL RS+ TS  A + V  +        G   +   A+    GI   A SS+F A P+
Sbjct: 237 LNETLVRSLNTSFIALVPVASLLFVGAGLLGAGTLEDLALAQFVGIASGAYSSLFFATPL 296

Query: 820 LLFIYD 825
           L+ +  
Sbjct: 297 LVDLKK 302


>gi|270261921|ref|ZP_06190193.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Serratia
           odorifera 4Rx13]
 gi|270043797|gb|EFA16889.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Serratia
           odorifera 4Rx13]
          Length = 1056

 Score =  185 bits (468), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/689 (9%), Positives = 181/689 (26%), Gaps = 49/689 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL+           + ++P   P               + +   
Sbjct: 7   RRPVFAWVIAIIIMLCGLMSI-----NSLPISQYPDVSPP-------------QIAISAT 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   L+      +   L            S       I ++F      +    +V 
Sbjct: 49  YPGADAETLENSVTQVIEQQLTGLDGLLYFSSTSSSDGSVSINVTFDQGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   S+L  +     +     +   +++     +   +   + +  ++    D +  
Sbjct: 109 NKVQQAESRLPSEVTSQGVTVKKSQSSFLLIVGLYDETDKATMADIADYLVSNLQDPLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P++L       + +       N        G       
Sbjct: 169 INGVGDVQVFGS-EYAMRIWLNPTKLASYSLMPSDVETAIEAQNTQVSAGKVGDLPAGAD 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V+ +  +                 +    I   +             +      
Sbjct: 228 QQLTATVKAQSRL-------------QTPEQFRNIILKSDSSGALVRLGDVARVELGNED 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L             A  +   T +         ++           + +     
Sbjct: 275 YSSSARLNGHPAAGIAVKLAAGANALNTAKLVKAKVGEYQSSMPDGYKVAYPKDSTDFIN 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+IV+F+ +   +  L+   ++ + ++ T  +L++ G ++   +
Sbjct: 335 ISIEEVVKTLFEAVVLVVIVMFIFLQNLRTTLIPTITVPVVLLGTFGVLAVFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +      +      + +         +    +      +
Sbjct: 395 LFGMVLAIGLLVDDAIVVVENVERVMREEKLPPREATEKSMKEITGALVGIAMVLSAVFL 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIF--------IIRYKKMKSID 524
            + FFGG      R F++T+  S+ +S+  A+++  A+           +     +   +
Sbjct: 455 PMAFFGGSTGVIYRQFSVTIVSSMALSVIMALTLAPALCATLLKPAHEELTDKGLLGKFN 514

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                      D +     R   + +   +L    ++  +         + +G + +   
Sbjct: 515 RGYDRLQAKYADKVGRVIHRPMRYLLMYGLLLIAAAVMYMRLPTGFLPNEDQGMVMVQYT 574

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                  +      + ++   ++ +  +    F +      G           +K     
Sbjct: 575 LPAGATDARTSVVSDEVKDYFLNNEKANVNSIFTINGFGFSGSGQNAGMAFVSLKDWSLR 634

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +T              +    +  +
Sbjct: 635 SGSENTADAIAKRAMGHFAGIRDAQVFSM 663



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    S +        +        +++   ++++    +    +P 
Sbjct: 260 VRLGDVARVELGNEDYSSSARLNGHPAAGIAVKLAAGANALNTAKLVKAKVGEYQSSMPD 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I + +  +  + + ++I ++I  +     L    T+ + +  T
Sbjct: 320 GYKVAYPKDSTDFINISIEEVVKTLFEAVVLVVIVMFIFLQNLRTTLIPTITVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A+FG   N   +  ++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 380 FGVLAVFGYSINTLTLFGMVLAIGLLVDDAIVVVENV--ERVMREEKLPPREATEKSMKE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      LPMA +GGS       F++ +   + ++   ++ +A  +   + 
Sbjct: 438 ITGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSVTIVSSMALSVIMALTLAPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 81/241 (33%), Gaps = 8/241 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +   +       +   +  +   +      G+    T     + +        S   + 
Sbjct: 803  MTPFSAFASSHWIYGPENLSRYNGLSSFEITGEGAPGTSSGTAMDEMEKLAAKFSAGSSY 862

Query: 655  EIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
               G      L       +  I+ + + + +   ++ W      +  + + +  +L    
Sbjct: 863  SWSGLSYQERLTSGQAGSLYAIALLVVFLCLAALYESWSIPFAVMMVVPMGVVGSLLAVT 922

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G+E ++    A+LT+IG S  + +++ +   +    Y    +      ++    L   
Sbjct: 923  LRGLENDIYFQVALLTIIGLSAKNAILIVEFAEE---KYQHGETLIASAVEASRMRLRPI 979

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + TS+A    VLP+A+    G +   +    +  G + A   +IF      + +    A+
Sbjct: 980  LMTSLAFTAGVLPLAISTGAGANSRIAIGTGIIGGTLTATLLAIFFVPLFYVLVRRVFAR 1039

Query: 830  N 830
             
Sbjct: 1040 K 1040


>gi|54302181|ref|YP_132174.1| preprotein translocase subunit SecF [Photobacterium profundum SS9]
 gi|46915602|emb|CAG22374.1| putative protein-export membrane protein SecF [Photobacterium
           profundum SS9]
          Length = 299

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 81/283 (28%), Positives = 147/283 (51%), Gaps = 6/283 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R++   +SI   + SI L+ T GLN+G+DF GG+   V  +  +  S +   L++   
Sbjct: 10  KWRYFTSAVSITLMLVSILLVATKGLNWGLDFTGGVVSEVQLSSKITSSEIEPLLKAGLH 69

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            D++         +++R           +     + + +  I    T+ NT IVGP++ +
Sbjct: 70  QDVAVIASGEPGRWVLRYAIPEAGQELPS-----ITEMLAPISTDITVLNTSIVGPQVGQ 124

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + +++  + +L Y+  RF+W  A G++  L+ D+   LGFFAL  +EFNLT +
Sbjct: 125 ELADQGGLALLVCMLCILGYLSYRFEWRLASGSLFALLHDVVFVLGFFALTQMEFNLTVL 184

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AAVL ++GYS+ND +++ DR+R+ +       S + + +++I  T  R++ TS    ++V
Sbjct: 185 AAVLAILGYSLNDSIIIADRIRELLIAKPK-WSIQKINNEAIAATFSRTMVTSGTTLMTV 243

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             + + GG  +  FAI M  GI+    SSI +   +       
Sbjct: 244 GSLWLLGGGPLEGFAIAMFIGIITGTWSSISVGTTLPELFGLK 286


>gi|317013356|gb|ADU83964.1| preprotein translocase subunit SecF [Helicobacter pylori
           Lithuania75]
          Length = 323

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 156/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEDRFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KG++ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGVLSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|294625400|ref|ZP_06704033.1| acriflavin resistance protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292600318|gb|EFF44422.1| acriflavin resistance protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1039

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 77/678 (11%), Positives = 184/678 (27%), Gaps = 45/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P               +      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  SR  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDALAGIEGISTIEARSRNGSSDISIEFVQSRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARPPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   Q  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARELTVADVEAALQNENVELPAGSIESAQRDFTLRVQRS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLNKGEGGYVVRLGDVARVELTSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +       A   A  ++          V          +    
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVAREARAQAEEVQKSLPKGTNIFVAFDTTTFIDAAVERV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +VL+V+++ +   +  L+   ++ + +I     L     ++ L ++  +VL
Sbjct: 335 YHTLVE--AVVLVVIWVFLGSARAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E I+      +    +   G  +    +  +    +   + + F  G
Sbjct: 393 CIGLVVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEG 452

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP---- 535
                 R  A+ +  ++ IS F A+++   M   ++R       +         +     
Sbjct: 453 NTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRAHGQAKPNRFHHWFDGRMQAVSG 512

Query: 536 -DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +++    R W   + +L ++ +   L     +     +      ++ + P      
Sbjct: 513 AYGRSLERHVHRTWIFALLMLLALGASAWLMGRIPSELAPAEDRGNFQIMIDGPEGAGFD 572

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +  +  Q+ DI       +K  +      PG   +   +         +     T   T
Sbjct: 573 YTVGQMHQVEDILRPFVGPDKPIVRANPRVPGGFGSSEEMHTGRVSVFLQDWEKRTRPTT 632

Query: 655 EIVGPKISRELIRKGIVG 672
           E+      +  +  G+  
Sbjct: 633 EVADEVQQKLNVLSGVRA 650



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 69/168 (41%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 857  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 916

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L G +  + +++ +      +L     S    I +S +  L   + TS+A  +  +P+ V
Sbjct: 917  LAGLAAKNGILIVEFAN---QLRDEGRSVHAAIVESASVRLRPILMTSIATVVGAIPLVV 973

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GG       +  + + FG+ ++   S+++       I  +      +
Sbjct: 974  AGGPGSASRATIGVVVIFGVSLSTLLSLYVVPAFYSLIAPYTKSPEAV 1021



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 8/165 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              E V+K + +   +    +T          +    +  V++  I + +          
Sbjct: 302 AQAEEVQKSLPKGTNIFVAFDTTTFIDAAVERVYHTLVEAVVLVVIWVFLGSA-----RA 356

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           AL    T+ + +         F    NL  + A++  IG  V+D +VV + +    +   
Sbjct: 357 ALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENI---QRRID 413

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                     +   +     + T+       LP+    G+    F
Sbjct: 414 LGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEGNTGRLF 458


>gi|15643624|ref|NP_228670.1| protein-export membrane protein SecF, putative [Thermotoga maritima
           MSB8]
 gi|4981395|gb|AAD35943.1|AE001752_10 protein-export membrane protein SecF, putative [Thermotoga maritima
           MSB8]
          Length = 293

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 145/293 (49%), Gaps = 4/293 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM      + IS++    SI  +FT G N+G++F GG ++ V            
Sbjct: 1   MRKEIDFMGKSKIFITISLILIAISIVSIFTKGFNFGVEFTGGSEIIVRFENKEVTENDI 60

Query: 596 SNLESLQIGDISF---QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
               S    + +           +     +Y            +   ++  E +    + 
Sbjct: 61  RAAISQISEEFANARIVEVRSAGDPSNVQKYSIIVPKTYEPDEKQKIQEEMEKLLSGKVV 120

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +   +    + E+ R     ++++ + +LIYI IRF++ F + A+  LI D+  T+GFF+
Sbjct: 121 SFNEISGTAAEEIRRGTWTAILVALVVLLIYITIRFRFIFGVAAVVALIHDVLITMGFFS 180

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG E N+ AVAA LTL+GYS+ND +V+ DR+R+NM+ Y    +  ++++ SIN+ L R+
Sbjct: 181 LFGYEINVAAVAAFLTLLGYSLNDTIVLSDRIRENMRRY-RGRNMVNIVNMSINQVLART 239

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + TS+  F  V  + ++ G+ +  FA  M  G +V   SS+++A+PI++    
Sbjct: 240 INTSLTTFFVVFVLLLFAGNAVKPFAFGMTVGTIVGTYSSLYVASPIIVKWTK 292


>gi|330958704|gb|EGH58964.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 1048

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 71/632 (11%), Positives = 172/632 (27%), Gaps = 52/632 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P+  P+              + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPNVAPQ-------------QVTITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVL--SQNNIDQVISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++       D      +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLMIFTLNYGGDSANKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPGT 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANQDGSAVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T++        L           V       
Sbjct: 275 QDYSFESRLDGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPEGVEFSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+++ +   ++ L+    + + +  TLA++ LLG ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMYLFLQNIRYTLIPTIVVPVCLAGTLAIMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPTAATIKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGQHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGRFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            V        +   +  + L+   +S +    
Sbjct: 575 DVQLPPGATRARTDATAQLLENYMLSREATGA 606



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   + ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLDGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSVPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMYLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPTAATIKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRALGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A    + I  PI         +  
Sbjct: 1009 ATLLGV-ILVPIFFVWVLSVLRRK 1031


>gi|154250631|ref|YP_001411455.1| acriflavin resistance protein [Parvibaculum lavamentivorans DS-1]
 gi|154154581|gb|ABS61798.1| acriflavin resistance protein [Parvibaculum lavamentivorans DS-1]
          Length = 1046

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 86/644 (13%), Positives = 189/644 (29%), Gaps = 43/644 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+        +  L  +P   P   +S+  D RG          
Sbjct: 10  RPVFAAVISLLLVAFGLVA-----FDRLPLREYPDIDPP-IVSITTDYRG--------AA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E  + ++       S +  +++IT+ F   R  +  A+ +   + G+
Sbjct: 56  AAVVETRITERIEERIAGIEGIAFIQSSSQDGRSRITIEFNPGRDVDAAANDIRDRVSGI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  +     +      +  I+      D    + +E +    R  +D+    +   +
Sbjct: 116 LDDLPTEADPPDIQKVDSSDDVIMWLNVVSD--RMNVLELTDYAERHLVDRFSTLDGVAR 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    D + L     T   +                          N  L
Sbjct: 174 VRLSGARSYAMRIWLDRTALAARELTVGDVEQALRAE-------------------NVEL 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +E +                     +                 I +  A       
Sbjct: 215 PAGNIESTQRQFTARVERSYRTPQDFSEIVLAQGSDGYLVRLGDVARIERAAAEERTFFR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +       ++  +     + A   A  L               +     G+ S  
Sbjct: 275 GNEVPMIGLGIIKQSTANTLTVTDGAKAEAERLAPTLPEGLEFKQSFDSSVFIEGAISEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T  I   LV++ +F+ +   +  LV   ++ ++V+ T  +L + G ++ L ++  +VL
Sbjct: 335 YKTLGIAIVLVVLTIFVFLGSARATLVPAVTVPVSVVATFLVLYIFGFSINLLTLLALVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E I     +  +   +   G  +    +  + I  +   V L F   
Sbjct: 395 AIGLVVDDTIVVLENIYRRMEEGATPLVAAYRGARQVGFAVIATTIALMAVFVPLTFIEG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI-----NPLSRFFLI 534
             G     FAITM  ++  S   A+S+   +   I++     +               L 
Sbjct: 455 EVGRLFSEFAITMAAAVGFSSLVALSLSPMLASKILKPTSNHTKFTIVVDNAFERTKALY 514

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +    MR        + +  +               + +G   + V A      +  
Sbjct: 515 ARALERSLMRPLPVFAAFAGMLLLAYGLFSIIPSEYAPREDRGTFFVMVNAPEGSSYAYT 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
            + +  ++   +           LVR     G++ +    + ++
Sbjct: 575 EAYMTEIEKRLMPLVEDGEISRLLVRAPRSFGNTASFNDGIAVI 618



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 78/228 (34%), Gaps = 9/228 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+  E       +     G              +       E +   + E +      ++
Sbjct: 264 RAAAEERTFFRGNEVPMIGLGIIKQSTANTLTVTDGAKAEAERLAPTLPEGLEFKQSFDS 323

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
            +       E+ +   + +++  + + +++         L    T+ + +  T     +F
Sbjct: 324 SVFIEGAISEVYKTLGIAIVLVVLTIFVFLG---SARATLVPAVTVPVSVVATFLVLYIF 380

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   NL  + A++  IG  V+D +VV + +    +      +      +   +     + 
Sbjct: 381 GFSINLLTLLALVLAIGLVVDDTIVVLENI---YRRMEEGATPLVAAYRGARQVGFAVIA 437

Query: 775 TSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
           T++A     +P+    G V      FAI MA  +  ++  ++ ++  +
Sbjct: 438 TTIALMAVFVPLTFIEGEVGRLFSEFAITMAAAVGFSSLVALSLSPML 485



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 63/157 (40%), Gaps = 7/157 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I+  + + + +  +F+ +   +  I+T+ L IT  L    L G   NL     ++ L+G 
Sbjct: 861  ILGIVVVFLVLAAQFESFVHPVVIISTVPLAITGGLLGIWLTGGTLNLYTQIGLIMLVGL 920

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +      +L      FR+ +  +    L   + T++      +P+ +    
Sbjct: 921  AAKNGILIVEFAN---QLRDEGQDFREALVGAAGIRLRPILMTAITTAAGAIPLILSFGP 977

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G     +  + +  GI+   + ++F+       +   
Sbjct: 978  GAETRAAIGVVIFSGIIATTAFTLFVVPVAYQALAQR 1014


>gi|331657345|ref|ZP_08358307.1| multidrug efflux protein [Escherichia coli TA206]
 gi|331055593|gb|EGI27602.1| multidrug efflux protein [Escherichia coli TA206]
          Length = 760

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 75/670 (11%), Positives = 182/670 (27%), Gaps = 39/670 (5%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
              G+L           + ++P   P   I                   + +   +    
Sbjct: 1   MLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGASAETLENSVTQVI 46

Query: 75  DELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           ++  + L         S       I ++F      +    +V   +Q   S+L  + ++ 
Sbjct: 47  EQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQQAESRLPSEVQQT 106

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +     +   ++++        + + + +  ++    D +   E              +
Sbjct: 107 GVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGVGSLQVFGA-EYAM 165

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP++L       + +       N        G     D+      V  +  +    
Sbjct: 166 RIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPDTQQLTATVRAQSRL---- 221

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                        +    I   +             +            L          
Sbjct: 222 ---------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAIGKLNGHPSAGVAV 272

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
                 +   T        A  +            + +      S      T      LV
Sbjct: 273 MLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVEDVIQTLFEAIVLV 332

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           + V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +VL IGL VD  I+
Sbjct: 333 VCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAMVLAIGLLVDDAIV 392

Query: 434 VNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           V E +    R        + +         +    +      + + FFGG      R F+
Sbjct: 393 VVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFS 452

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR----A 545
           IT+  ++L+S+  A+++  A+   ++++              F        Q        
Sbjct: 453 ITIISAMLLSVVVALTLTPALCGSVLQHVPPHKKGFFGAFNRFYRRTEDKYQRGVIYVLR 512

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R        +     + L+        +  +   ++ V    P   +  R+   + QI D
Sbjct: 513 RAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGATAARTAEVNRQIVD 572

Query: 606 ISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
               N     + +  +      G           +K         +T Q   +   K   
Sbjct: 573 WFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENTAQAIALRATKELG 632

Query: 664 ELIRKGIVGV 673
            +    +  +
Sbjct: 633 TIRDATVFAM 642



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 241 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 300

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 301 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 360

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 361 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 418

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 419 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 469


>gi|281357322|ref|ZP_06243811.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Victivallis vadensis ATCC BAA-548]
 gi|281316353|gb|EFB00378.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Victivallis vadensis ATCC BAA-548]
          Length = 1067

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/604 (10%), Positives = 172/604 (28%), Gaps = 40/604 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+           + ++P+  P               + +    
Sbjct: 9   RPRFAFVISIVITLAGLISIF-----TLPVAQYPNITPSL-------------ISVTTTY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + +     + + L        I   +       I ++F      +        
Sbjct: 51  PGADAKTVQETVIQPIEAQLNGVKRMLYISSTATDTGMATINVTFDIGTDGDQNTVNTQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   ++++  + ++  ++   +    + +      +    ++  +        D++   
Sbjct: 111 RVNWASAQMPEEVRRQSVIVKEKSSNMLQVIALYSPKGTYDSLFLNNYSSINLKDELARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      +   +    D  +L  L  T   +       N        G   +    
Sbjct: 171 PGVGDVQMLGELKYSMRIWLDSDKLAYLNMTVDDVIAAIKAQNVQVSAGALGDAPISGKQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y ++ +   +             +  +    +        +        +       
Sbjct: 231 VFRYSLQTQGRFT-------------EPKEFENIVVRSTSAGEQVRLRDIAKVELGAENY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +G    E A      L+          +          
Sbjct: 278 SSSGSFNGKPAALLAIYQLNDANGLEIAEAARKKLEELKVYFPEDLDYAIPFDMTDFITA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+++ ++ +   +  +V   +I +++I T A+++++G ++ L ++
Sbjct: 338 SIDEVVVTLIEAVLLVILITYLFLQDWRSTMVPTIAIPVSLIGTFAVMAVIGYSINLITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNIT---ALIA 473
            G++L IG+ VD  I+V E +     +       +      +    +  + +      I 
Sbjct: 398 FGLILAIGVVVDDAIVVIENVNRLMEEEHLDPKAAAIKSMEQVTGPVIATTLVLLAMFIP 457

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   R F IT+ +++ IS   A+++  A+   I+R     +        F  
Sbjct: 458 VCFLPGITGEMYRQFGITISVAVAISSVNALTLSPALSAMILRPIDPNAKKFIFFRWFDA 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + +   + +     V  + L  +C   L F     +     G I         V++ +
Sbjct: 518 GFEKLTAGYGKIVSPIVRRTSLMIVCYAGLAFLCVQLFNHLPTGFIPDEDQGKLFVNVQL 577

Query: 594 VRSN 597
             + 
Sbjct: 578 PDAA 581



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/440 (12%), Positives = 139/440 (31%), Gaps = 20/440 (4%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           +  + +T T   +A I +   +  D +          N  +  +   +        S I 
Sbjct: 76  MLYISSTATDTGMATINVTFDIGTDGDQNTVNTQNRVNWASAQMPEEVRRQ-----SVIV 130

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
               + ++  + L+   G     F        L      I  V  + +       M+   
Sbjct: 131 KEKSSNMLQVIALYSPKGTYDSLFLNNYSSINLKDELARIPGVGDVQMLGELKYSMRIWL 190

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISI----LFSICSICLLFTHGLNYGIDFKGGIQ 580
            +    +  +     I  ++A+   V          S   +            + K    
Sbjct: 191 DSDKLAYLNMTVDDVIAAIKAQNVQVSAGALGDAPISGKQVFRYSLQTQGRFTEPKEFEN 250

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V +    +   +R   +     +    +          L     +      + E  +K
Sbjct: 251 IVVRSTSAGEQVRLRDIAKVELGAENYSSSGSFNGKPAALLAIYQLNDANGLEIAEAARK 310

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWYFALGA 696
           K+ E+           +   ++  +       V+    A+L+ I I +     W   +  
Sbjct: 311 KLEELKVYFPEDLDYAIPFDMTDFITASIDEVVVTLIEAVLLVILITYLFLQDWRSTMVP 370

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + + +  T    A+ G   NL  +  ++  IG  V+D +VV + +  N  +    + 
Sbjct: 371 TIAIPVSLIGTFAVMAVIGYSINLITLFGLILAIGVVVDDAIVVIENV--NRLMEEEHLD 428

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSS 812
            +    KS+ +  G  + T++   +++     +     G +   F I ++  + +++ ++
Sbjct: 429 PKAAAIKSMEQVTGPVIATTL-VLLAMFIPVCFLPGITGEMYRQFGITISVAVAISSVNA 487

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + ++  +   I      NA+
Sbjct: 488 LTLSPALSAMILRPIDPNAK 507



 Score = 54.3 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 72/242 (29%), Gaps = 9/242 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             L  +R+      +   +  +                   A   +   V     +     
Sbjct: 801  TLVNIRTRPSPQYLNRYNLYSSATVNGMQRPGYSSGQAMKAMEEIARKVLPAGMKFEWTD 860

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                 +     IS   I   ++ VI +   + +Y+++      W   +  +  + +    
Sbjct: 861  MSYQEQKSAAGISLGSIEINMMAVIFALALLFMYLFLVAQYESWMLPVAVLLAVPIAFFG 920

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +L    L GI+ N+      + L G +    +++ +  +     Y       D    +  
Sbjct: 921  SLLSLYLAGIDNNIYTQVGFVLLFGIACKTAILIVEFAK---NKYDEGTPLYDAALAAAR 977

Query: 767  ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + T+++  +  LP+ +    G +   S    +  G+ VA      +     + +
Sbjct: 978  LRFRAVLMTAISFLLGTLPLVIATGAGAASRRSLGTAVFGGMFVAVIGGTILIPAFYVLV 1037

Query: 824  YD 825
              
Sbjct: 1038 QR 1039


>gi|281411509|ref|YP_003345588.1| protein-export membrane protein SecF [Thermotoga naphthophila
           RKU-10]
 gi|281372612|gb|ADA66174.1| protein-export membrane protein SecF [Thermotoga naphthophila
           RKU-10]
          Length = 293

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 82/293 (27%), Positives = 145/293 (49%), Gaps = 4/293 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM      + IS++    SI  +FT G N+G++F GG ++ V            
Sbjct: 1   MRKEIDFMGKSKIFITISLILIAISIVSIFTKGFNFGVEFTGGSEIIVRFEDKQVTENDI 60

Query: 596 SNLESLQIGDISF---QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
               S    + +           +     +Y            +   ++  E +    + 
Sbjct: 61  RTAISQISEEFAKARIVAVRSAGDPSNVQKYSIIVPKTYEPDEKQKIQEEMEKLLSGKVV 120

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +   +    + E+ R     ++++ + +LIYI IRF++ F + A+  LI D+  T+GFF+
Sbjct: 121 SFNEISGTAAEEIRRGTWTAILVALVVLLIYITIRFRFIFGVAAVVALIHDVLITMGFFS 180

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG E N+ AVAA LTL+GYS+ND +V+ DR+R+NM+ Y    +  ++++ SIN+ L R+
Sbjct: 181 LFGYEINVAAVAAFLTLLGYSLNDTIVLSDRIRENMRRY-RGRNMVNIVNMSINQVLART 239

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + TS+  F  V  + ++ G+ +  FA  M  G +V   SS++IA+PI++    
Sbjct: 240 INTSLTTFFVVFVLLLFAGNAVKPFAFGMTVGTIVGTYSSLYIASPIIVKWTK 292


>gi|91787912|ref|YP_548864.1| hydrophobe/amphiphile efflux-1 HAE1 protein [Polaromonas sp. JS666]
 gi|91697137|gb|ABE43966.1| Hydrophobe/amphiphile efflux-1 HAE1 [Polaromonas sp. JS666]
          Length = 1059

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 73/551 (13%), Positives = 153/551 (27%), Gaps = 46/551 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G +        Q  + ++P   P               +V+    
Sbjct: 8   RPIFAWVIALFILVVGGVSI-----TQLPIAQYPPVAPPA-------------IVINTAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +    G+              ITLSF      E     V  
Sbjct: 50  PGASAQTLEDSVLSVIEREMNGSPGLIYMESVAQADGSGSITLSFQPGTNAELAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L   + +L     +  +     +   ++ +  + D      +       R  + ++   
Sbjct: 110 RLSRASPRLPAAVAQQGVRVDKSRANFLLFTMLSSDNPAHDPVALGDYASRNIVPELQRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L     +   ++      N        G R      
Sbjct: 170 PGIGQAQLFGS-ERAMRIWLDPAKLTGFSLSANDVNTAIRAQNAQVAAGSIGDRPNVAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G    V    +++ +              +    +                 I       
Sbjct: 229 GIAATVVVNGQLANV-------------GQFGNIVLRANPDGSSVRLKDVARIELGGQTY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   + +      A L+          +   +      
Sbjct: 276 ATSARLNGKPAVGIGVQLAPNGNALASAKAVREKMAELQRYFPQGMKWDIPYDSSRFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV +V+F+ +   ++ ++    + ++++ T A L  LG ++ + ++
Sbjct: 336 SISQVAETLFEAVALVFLVMFLFLQNWRYTIIPTIVVPISLLGTFATLLALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +    I    +  +   V 
Sbjct: 396 FGMVLVIGIVVDDAIVVVENVERIMTEEGLPPLEATRKAMKQISGAIIGVTVVLISVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L FF    G   R F+  M  SI  S F A+S+  A+   +     +K ++         
Sbjct: 456 LAFFAGSTGNIYRQFSAVMVSSIGFSAFMALSLTPALCATL-----LKPVEAGHHHEKTG 510

Query: 534 IPDCIAIQFMR 544
                   F R
Sbjct: 511 FFGWFNRGFTR 521



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/203 (11%), Positives = 72/203 (35%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    +  +++   + +      ++         ++       V +  + M +++ 
Sbjct: 301 ASAKAVREKMAELQRYFPQGMKWDIPYDSSRFVRISISQVAETLFEAVALVFLVMFLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W + +     + + +  T       G   N+  +  ++ +IG  V+D +VV + + 
Sbjct: 361 ---NWRYTIIPTIVVPISLLGTFATLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +   +   K++ +  G  +  ++      +P+A + GS       F+  M 
Sbjct: 417 -ERIMTEEGLPPLEATRKAMKQISGAIIGVTVVLISVFVPLAFFAGSTGNIYRQFSAVMV 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 476 SSIGFSAFMALSLTPALCATLLK 498



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 53/140 (37%), Gaps = 7/140 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + +A+ + +   ++ W   L  I  + L +   L    L     ++     ++T+IG 
Sbjct: 874  GFAILAVFLCLAALYESWTIPLAVILVVPLGVIGVLLATLLRAYSNDVYFQVGLITIIGL 933

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            S  + +++ +  +    L        +    + +      + TS+A  + V+P+ +    
Sbjct: 934  SAKNAILIIEFAKD---LQAQGKGVIESALAAAHLRFRPIIMTSLAFGLGVMPLVLASGA 990

Query: 790  GGSVIGSFAIPMAFGIVVAA 809
            G +   +    +  G+V   
Sbjct: 991  GSASQRAIGTAVIGGMVTGT 1010


>gi|261341156|ref|ZP_05969014.1| hydrophobe/amphiphile efflux-1 family protein [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316450|gb|EFC55388.1| hydrophobe/amphiphile efflux-1 family protein [Enterobacter
           cancerogenus ATCC 35316]
          Length = 1031

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 66/614 (10%), Positives = 172/614 (28%), Gaps = 45/614 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   KRPRFAMVIALVITLLGAIA-----LRIIPVEQYPQITPPV-------------VNVSAS 48

Query: 62  EDDFV-NGFLQMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                     +  +  L + L           +     +  + ++FA     +  A  V 
Sbjct: 49  WPGASSADVAEAIATPLETQLNGVDHMLYMESTSSDEGSYSLNITFAAGTDPDLAAIDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    ++L  + ++N +         ++             +  S     Q  + +  
Sbjct: 109 NRVAQALAQLPAEAQQNGVQVRKRATNLMMGVSLYSPNNTHTPLFVSNYASTQVREALSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q          +     P R+  L  TT  ++      N        G   + + 
Sbjct: 169 LPGVGQVQMFGARDYSMRIWLRPDRMNALNVTTDDVAQALREQNVQGAAGQVGTPPVFNG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     +S             +       I       +         I      
Sbjct: 229 QQQTLTINGLGRLS-------------QAGDFADVIIRAGEMGQLVRLKDVATIELGSRS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G  L                +     +        L           V+        
Sbjct: 276 YSSGAQLNGHDSAYLGIYPTPSANALRVADAVRAELERLSTRFPDDLTYEVKFDTTSFVA 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      + A+    V++V+ + +   +  L+   +I ++++ T A+L  LG +    S
Sbjct: 336 ATIKEIGVSLALTMLAVVVVVSLFLQSWRATLIVALAIPVSLVGTFAVLYTLGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  I+L + + VD  I+V E +     + QS   +  +   +    +  + +  L   V 
Sbjct: 396 LFAIILALTMVVDDAIVVVESVETLMAEGQSRTAATALALRQIAGPVIATTLVLLAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINP 527
           +       G   R FA+T+  ++ +S   A+++  A+   ++R +        +  +   
Sbjct: 456 VALLPGIVGELYRQFAVTLSTAVTLSSLVALTLTPALCAMLLRPRPAHPAAIFRGFNRGL 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        ++   +R     +  +   +I     +         + +G     V    
Sbjct: 516 DATRNAYTRMVSALNLRPWLALLATAGAAAIVVFSFMSMPKGFLPQEDQGYFFASVQLPE 575

Query: 588 PVDLSVVRSNLESL 601
              L    + + + 
Sbjct: 576 AASLERTEAVMTTA 589



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/420 (10%), Positives = 116/420 (27%), Gaps = 19/420 (4%)

Query: 425  GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
               ++     N        K+ S    LD         +       ++        G G 
Sbjct: 608  FNILNGTSASNGGFISIMLKDWSERPPLDEVMGTLQRQLLALPEATIMTFAPPTLPGLGN 667

Query: 485  VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF------------ 532
              GF + +      S      + R ++    ++ ++  +     S               
Sbjct: 668  ASGFDLRIQAQAGQSPAELERVTREVLAKANQHPQLSRVFTTWSSNVPQLTLTVDRERAA 727

Query: 533  LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
             +   ++  F   +    G        +  +      N     +   Q+  L  R     
Sbjct: 728  RLDVPVSRIFSSLQTAFGGTRAGDFSVNNRVYHVVMQNEMQWRERAEQISELFVRSNGGE 787

Query: 593  VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             VR +        +          F              +     V  +I      +   
Sbjct: 788  RVRLSNLVTITPSVGAPFLQQYNQFPSVSVSGSAADGVSSSTAMAVMGQILAANLPAGYD 847

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                      ++   + I  V+ + +   +++  +++ W      + +++  I   L + 
Sbjct: 848  YAWSGMSYQEQQTGNQAIWIVLAAVVMAWLFLVAQYESWTLPASVMLSVLFAIGGALVWL 907

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             + G   ++     ++ LI  +  + +++ +  R         ++  D   +  +     
Sbjct: 908  WIAGYANDVYVQIGLVLLIALAAKNAILIVEFAR---ARRMDGMAIVDAAREGASRRFRA 964

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + T+++  I VLPM +    G          +  G++VA    I     + +     R 
Sbjct: 965  VMMTAVSFIIGVLPMMLASGAGAQSRRIIGTTVFSGMLVATVVGILFIPALFVLFQRLRE 1024



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 88/248 (35%), Gaps = 7/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + V L  V +     +      Q    +  +L        +++     +    ++++
Sbjct: 256 EMGQLVRLKDVATIELGSRSYSSGAQLNGHDSAYLGIYPTPSANALRVADAVRAELERLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P       +          I++  V + ++ +A+++ + +    W   L     + +
Sbjct: 316 TRFPDDLTYEVKFDTTSFVAATIKEIGVSLALTMLAVVVVVSLFLQSWRATLIVALAIPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N  ++ A++  +   V+D +VV + +     L     S      
Sbjct: 376 SLVGTFAVLYTLGYSANTLSLFAIILALTMVVDDAIVVVESV---ETLMAEGQSRTAATA 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++ +  G  + T++      +P+A+     G +   FA+ ++  + +++  ++ +   +
Sbjct: 433 LALRQIAGPVIATTLVLLAVFVPVALLPGIVGELYRQFAVTLSTAVTLSSLVALTLTPAL 492

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 493 CAMLLRPR 500


>gi|188575843|ref|YP_001912772.1| RND superfamily protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520295|gb|ACD58240.1| RND superfamily protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 862

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/574 (12%), Positives = 150/574 (26%), Gaps = 42/574 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL      L    ++++P   P               + +    
Sbjct: 8   RPNFAWVVAIFISLAGLLA-----LRTLPVEKYPEVAPP-------------QISIMATY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +       +   L           S      +IT++F            V   
Sbjct: 50  PGASAQLVNDAVTSAIEQELNGARDMLYYDSSSSNGSAQITITFQPGTDPNIAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIGI 176
           ++   S+L     +  L         ++L          +   +  +    R   D+I  
Sbjct: 110 IRQSESRLPAAVTQLGLQVEQTTAGFLMLYSLVYKDATAVQDVVRLNDYAARVVNDEIRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    D   LR    +   ++      N        G R     
Sbjct: 170 VPGVGRVQFFGA-EAAMRVWVDTQALRGYGLSIVDVNNAIRAQNLQVAAGSLGERPGAQD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +                       +    +   +             +   L  
Sbjct: 229 QELTTTL-------------VVPGLMESPQEFGQIVLRAQANGAVVHLSDVAKLELGLEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T+         L           V   +     
Sbjct: 276 YQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRKRLEELSQSFPADIAYSVPFDSSTFVN 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV +V+F+ +   ++ L+    + + ++ T A++ LLG ++ + S
Sbjct: 336 VAIKKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGTFAVMKLLGFSVNMMS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +      +  S   +     ++    I    +      +
Sbjct: 396 MFAMVLAIGILVDDAIVVVENVERLMADEGLSPRDASMKAMTQVGGAIVGITLVLTAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L F  G      R F+  + +SIL S F A+++  A+    +               F 
Sbjct: 456 PLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPALCATFLAPIDGHQEKNGFFGWFD 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
              + +  +F R     V  +    +    LL  
Sbjct: 516 RNFNALTSRFDRLNHRLVHRAGRCMLVYAVLLSV 549



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V      L+      Q   G            G++VA    +    +++++  P 
Sbjct: 261 VHLSDVAKLELGLENYQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRKRLEELSQSFPA 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            I+K +  ++ +   + + +++  +   + L     + + +  T
Sbjct: 321 DIAYSVPFDSSTFVNVAIKKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N+ ++ A++  IG  V+D +VV + +     +    +S RD   K++ +
Sbjct: 381 FAVMKLLGFSVNMMSMFAMVLAIGILVDDAIVVVENV--ERLMADEGLSPRDASMKAMTQ 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LP+A   G   VI   F+  +A  I+ +   ++ +   +
Sbjct: 439 VGGAIVGITLVLTAVFLPLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPAL 493


>gi|317181245|dbj|BAJ59031.1| preprotein translocase subunit SecF [Helicobacter pylori F32]
          Length = 323

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 156/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILNFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|85058662|ref|YP_454364.1| acriflavin efflux protein AcrB [Sodalis glossinidius str.
           'morsitans']
 gi|84779182|dbj|BAE73959.1| acriflavin efflux protein AcrB [Sodalis glossinidius str.
           'morsitans']
          Length = 1054

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 76/689 (11%), Positives = 183/689 (26%), Gaps = 51/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  ++++P+  P               + +    
Sbjct: 8   RPIFAWVIAIIIMLAGALSIL-----KLPIEQYPAIAPPT-------------IRITATY 49

Query: 63  DDFVNGFLQMYSDEL-RSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  LQ    ++    +        +   S       ITL+F      +    +V  
Sbjct: 50  PGADASTLQDSVTQIVEQNMNGIDHLMYMASDSDSSGTATITLTFESGADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    D       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVQVQKSSASFLMVAGFISDDKNMTQEDIADYVGSSLKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T   +     + NN       G        
Sbjct: 170 NGVGEVQLFGAQ-YAMRIWLDPNKLNNFQLTPVDVISALEVQNNQIAAGQLGGSPPVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +               T +             +        I       
Sbjct: 229 QLNTSIIVQTRL-------------KTTDEFGKIQLKVNPDGSQVRLKDVATIALGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +   T          L+A        +           
Sbjct: 276 DIIARINGQPATGLGIKLATGANALDTANAVKAELGRLQANFPAGLKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+L   G T+   ++
Sbjct: 336 SITEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILGAFGYTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FACVLAIGLLVDDAIVVVENVERVMAEEGLSPIEATRKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFGG      R F+IT+  ++++S+  A+ +  A+   +                   
Sbjct: 456 MAFFGGSTGAIYRQFSITIVSAMILSVIVALVLTPALCATLLKPIKKGDHGKTTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           D I         + +   ++    ++  +         + +G      
Sbjct: 516 NKKFDQSTHHYTDSIGHILNSTGRYLLIYLLIVVGMALLFIRLPTSFLPDEDQGVFLTMT 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           L          +  L+ +    ++ +  +    F V      G       V   +K    
Sbjct: 576 LLPAGATQERTQHVLDEVTQYYLNNEKDNVRSVFTVNGFGFAGRGQNSGIVFVSLKDWGE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                + +        +   ++    ++ 
Sbjct: 636 RSGAENKVPAITARANQAFSKIKDGIVLA 664



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 87/247 (35%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +  DI  +        L        +++     ++    ++    
Sbjct: 258 SQVRLKDVATIALGGESYDIIARINGQPATGLGIKLATGANALDTANAVKAELGRLQANF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 318 PAGLKVVYPYDTTPFVKISITEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T      FG   N   + A +  IG  V+D +VV + +     +    +S  +   KS+
Sbjct: 378 GTFAILGAFGYTINTLTMFACVLAIGLLVDDAIVVVENV--ERVMAEEGLSPIEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA +GGS       F+I +   ++++   ++ +   +   
Sbjct: 436 GQIQGALVGIALVLSAVFVPMAFFGGSTGAIYRQFSITIVSAMILSVIVALVLTPALCAT 495

Query: 823 IYDWRAK 829
           +     K
Sbjct: 496 LLKPIKK 502



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 77/228 (33%), Gaps = 7/228 (3%)

Query: 591  LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                   L ++      + +   E+   +      G++       E +         L  
Sbjct: 793  SDNQMVPLSAVTTARWQYGSPRLERYNGLPSMEIQGEAAPGKSTGEAMALMEQLAGKLPA 852

Query: 651  IQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
                +  G      L       +  IS I + + +   ++ W      +  + L +   L
Sbjct: 853  GIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGAL 912

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                L G+  ++     +LT IG S  + +++ +  +  M+         +   +++   
Sbjct: 913  LAATLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LIEATLEAVRMR 970

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
            L   + TS+A  + VLP+A+    G     +    +  G+V A   +I
Sbjct: 971  LRPILMTSLAFILGVLPLAISTGTGSGSQNAVGTGVMGGMVTATLLAI 1018


>gi|217033846|ref|ZP_03439271.1| hypothetical protein HP9810_877g50 [Helicobacter pylori 98-10]
 gi|216943744|gb|EEC23187.1| hypothetical protein HP9810_877g50 [Helicobacter pylori 98-10]
          Length = 323

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 154/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +    ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQARILSFMRYSNYGVVVSAILVFLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEMLI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIIFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|119384518|ref|YP_915574.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Paracoccus
           denitrificans PD1222]
 gi|119374285|gb|ABL69878.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Paracoccus denitrificans PD1222]
          Length = 691

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/622 (11%), Positives = 168/622 (27%), Gaps = 37/622 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +GLL           + ++P   P +                    
Sbjct: 8   RPVFAWVISILIMGLGLLSI-----TSLPVAQYPQIAPPSVT---------IRATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGI-GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D V   +    ++  + L         S     +  TL+F      +    +V   L  
Sbjct: 54  ADTVANTVTQIIEQQMTGLDGLRYFSSSSTSAGTSTTTLTFETGTDPDIAQVQVQNKLAQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    ++  +         +++            ++ +  +I   ++ +   E   
Sbjct: 114 ATALLPEPVQRQGITVEKSASGFLMVIGLTSADDRYEQVDLADYLISNLVNDLSRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DPS+L     T + +       N       FG +          
Sbjct: 174 SVQVFGAQ-YAMRIWLDPSKLAAYELTPSDVVAAVSSENAQISAGSFGSQPAPRGQMLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +S                     +   E             +       +   
Sbjct: 233 TVTAQSLLS-------------TPEDFEQIVLRAEQDGGLILLKDVARVEIGAEDYMTNA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +    S  +  +   T E                   ++        L S   
Sbjct: 280 RYNGQPASGMAISLASGANALDTAERVKARMEEFARFFPEGMDYVIPFDTTPFVLISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+ + +   +  L+   ++ + ++ T  +L+ LG T+   ++  +V
Sbjct: 340 VVKTLVEAIVLVFFVMLLFLQNWRATLIPTLAVPVVLLGTFGVLAALGFTINTLTMLAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEEEGLDPREATRKSMGQITGALIGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLSRFFL 533
           GG      + FAIT+  ++ +S+  A+++  A+   +++ +          +        
Sbjct: 460 GGSTGVIYKQFAITIASAMGLSVLVALTLTPALCATLLKNEHGHKTRGFFGLFNRGFDRT 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           I    +      R     + I   I +  +        G        +  +  +    + 
Sbjct: 520 IHGYGSSVNWLIRRPLRMMLIYLCIGAAMVFLFLRTPTGFLPDEDQGIMFVLVQGPTGAT 579

Query: 594 VRSNLESLQIGDISFQNFDGEK 615
                  +      F   + + 
Sbjct: 580 SERTDAVIDQIQHYFAENESDN 601



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 83/240 (34%), Gaps = 12/240 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +    + +      + +        +++     ++   ++     P     
Sbjct: 264 DVARVEIGAEDYMTNARYNGQPASGMAISLASGANALDTAERVKARMEEFARFFPEGMDY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                        I + +  ++ + + +   + +  + W   L     + + +  T G  
Sbjct: 324 VIPFDTTPFVLISIEEVVKTLVEAIVLVFFVMLLFLQNWRATLIPTLAVPVVLLGTFGVL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINET 768
           A  G   N   + A++  IG  V+D +VV    +R+ +        +  R+   KS+ + 
Sbjct: 384 AALGFTINTLTMLAMVLAIGLLVDDAIVVVENVERIMEE-----EGLDPREATRKSMGQI 438

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  +  ++      +PMA +GGS       FAI +A  + ++   ++ +   +   +  
Sbjct: 439 TGALIGIALVLSAVFVPMAFFGGSTGVIYKQFAITIASAMGLSVLVALTLTPALCATLLK 498


>gi|114799636|ref|YP_760808.1| hydrophobe/amphiphile efflux-1 family protein [Hyphomonas neptunium
           ATCC 15444]
 gi|114739810|gb|ABI77935.1| transporter, hydrophobe/amphiphile efflux-1 family [Hyphomonas
           neptunium ATCC 15444]
          Length = 1066

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 71/600 (11%), Positives = 170/600 (28%), Gaps = 38/600 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I  +G         PQ  L ++P   P               +V+   
Sbjct: 9   RRPIFAAVISVVITLLGAFA-----FPQLPLAQYPEIAPPT-------------VVVTAS 50

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVT 116
                +  +    +  L   +   EG+   +     + +   T++F      +    +V 
Sbjct: 51  YPGASSEDVANQVAAPLEQEINGVEGMIYMTSSSTADGVVMLTITFEPGTDLDTAQVQVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L    ++  +    +    ++L               +        D++  
Sbjct: 111 NRVSRAEPRLPEQVRQTGVSVNQQASGFLLLVAITSPGGQLDKDYVANYAASNIKDRLLR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P R   L  T+A +       N    G   G     ++
Sbjct: 171 INGVGGIEVFGGGNYSMRVWINPERAAALNLTSADIVAALRAQNIQAAGGTLGQPPFAEA 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               + +   V++SG  +            +    +                 +      
Sbjct: 231 GAPPFQI--PVQVSGRLIE---------PEEFGDVVIRRGEDGSVVRLRDVARVDIGAEN 279

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
            L               S     +     E       +           ++         
Sbjct: 280 YLMRSYFDGQPGIGLAVSQLPGSNALEAAEQVLAEMELAAQEFPEGLEYMIPYNPTEFVQ 339

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S S  +        LV+IV+ + +   +  L+   +I +++I   A+   LG ++   S
Sbjct: 340 ASVSAVEHALIEAVFLVMIVILIFLQTWRAALIPILAIPVSIIGVFAVQLALGYSINSLS 399

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  +VL +G+ VD  I+V E +    R+ ++   +     +     +   N+  +   V 
Sbjct: 400 LFALVLAVGIVVDDAIVVVENVERSIREGKTPMQAAITSMNEVGGALIAMNLVLVSVFVP 459

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             F GG        FA+ +  + +IS+  ++++  A+   +++  +  S          L
Sbjct: 460 TLFMGGIPGIFYEQFAVAIASAAVISLLVSLTLSPALCALLLKPHEEHSHKKGSPILAPL 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                        +       + S     L+    +  G+    G +L       +    
Sbjct: 520 RIASNGFNK-GFDWLSNTYGTVVSKLVRMLVIVMIVYAGLLATTGWRLSATPTGFIPEQD 578



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 89/262 (33%), Gaps = 20/262 (7%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G  Q+     + V +S V   ++      +   N         +         +   + E
Sbjct: 798  GQFQVRSSTGQMVPISAVAQIVDGSGPVRMVRHNNFPAIELSGQTAAGVSTGASLAAMEE 857

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFA 693
            M  + + + +                + +     +  +++ I + + +      F   FA
Sbjct: 858  MAAQVLPDGISY-----EWTEIAYQEKAVGNSSTMIFVMAVIFVFLVLAAQYEAFTLPFA 912

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            +  I  + + +  T+G   + G+  ++ A   ++ L+  +  + +++ +  +        
Sbjct: 913  VIFIVPMCI-LAATIGI-NIAGMANDILAQVGLIVLVALAAKNAILLVEFAK--QAEEQR 968

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
             ++  +   +     L   + TS A    V+P+A     G  +  S  I +  G++    
Sbjct: 969  GLTPHEAAVEGSRLRLRPILMTSFAFIFGVMPLAFATGAGAEMRQSIGITVFSGMIG--- 1025

Query: 811  SSIF--IAAPILLFIYDWRAKN 830
             +IF  I  P    I    +K 
Sbjct: 1026 VTIFGLIFTPAFYVIGRMISKR 1047



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 80/240 (33%), Gaps = 6/240 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                 +   G     +  G + +    +  V      + ++      +    FDG+   
Sbjct: 233 PPFQIPVQVSGRLIEPEEFGDVVIRRGEDGSVVRLRDVARVDIGAENYLMRSYFDGQPGI 292

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIIS 676
            + +   PG +  +     + + ++        ++      P    +     +   +I +
Sbjct: 293 GLAVSQLPGSNALEAAEQVLAEMELAAQEFPEGLEYMIPYNPTEFVQASVSAVEHALIEA 352

Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              ++I I I  + W  AL  I  + + I          G   N  ++ A++  +G  V+
Sbjct: 353 VFLVMIVILIFLQTWRAALIPILAIPVSIIGVFAVQLALGYSINSLSLFALVLAVGIVVD 412

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVI 794
           D +VV + +    +      +       S+NE  G  +  ++      +P + + G   I
Sbjct: 413 DAIVVVENV---ERSIREGKTPMQAAITSMNEVGGALIAMNLVLVSVFVPTLFMGGIPGI 469


>gi|88858562|ref|ZP_01133204.1| putative acrB/acrD/acrF acriflavin resistance family protein
           [Pseudoalteromonas tunicata D2]
 gi|88820179|gb|EAR29992.1| putative acrB/acrD/acrF acriflavin resistance family protein
           [Pseudoalteromonas tunicata D2]
          Length = 1030

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 69/668 (10%), Positives = 192/668 (28%), Gaps = 43/668 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G++           L  +P                         
Sbjct: 9   KRPVFAIVINLLLLTFGIVA-----FSMLPLREYPDIDTPIV---------SISTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S ++       S R  ++ IT+ F  +R  +  A+ V   +  
Sbjct: 55  SSEIIETKITQIIENQISGIEGIKNINSSSRNGRSNITIEFNINRDIDAAANDVRERVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +   +  +   +  I     N +    +++E S    R  +D+I + +   
Sbjct: 115 ALNNLPDQVRPPEVTKSDSDDSPIAWFVLNSN--TMNSLELSDYAQRYIVDRIAVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +  ++     T +++       N               +     
Sbjct: 173 NVRVGGERRYAMKIWLNRDQMAARGITASEIETVLRAENVELPAGEIESVDRDFTVRT-- 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A            +    +           ++        +  
Sbjct: 231 -----------------ARSYKNQEDFENLVVKRGLDGYLVRLNEVADVKLEAQDEENLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +A+ +    +E A      ++              +      S + 
Sbjct: 274 RGNGRNMIGLGIIKQAKANTLTVVENARAELNKIKQSLPQGTTIEDSYDSSIFISESINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +   +  L+   ++ + +I +   L  +G ++ L ++  +V
Sbjct: 334 VYRTLIISMILVVLVIYLFLGNLRATLIPALTVPVALIGSFMFLYAMGYSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I       +    +   G       I  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVMLENIHRRIELGEPRLLAAYRGAREVGFAIIATTLVLIAVFVPLVFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FA+ +  +++ S  TA+++  A+   +++    +S     + RF    +  
Sbjct: 454 GRVGSLFTEFAMAVSAAVIFSSITALTLSPALCSKLLKPSNKESKFNQMVERFLTRVEQK 513

Query: 539 A-----IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                     +     + + +      + +          + +G   + +          
Sbjct: 514 YQAVLESNLQKTNSMSLVLILAAVASFLLMQILPSELTPKEDRGTFFIMMNGPEGASYEN 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
             +N+  ++   + +         LVR+    G        ++  + +      +    +
Sbjct: 574 NAANMAKIEDKLLPYAESGELSRVLVRVPGWGGQGGVAIVGMDDWENRTRSTWQVMDEIS 633

Query: 654 TEIVGPKI 661
            E+     
Sbjct: 634 QELQSVTD 641



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 66/166 (39%), Gaps = 8/166 (4%)

Query: 668  KGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              +  V +++ +   + +  +F+ +      + T+ L +   L      G   N+ +   
Sbjct: 849  SAMTAVFVLALMVTFLVLAAQFESFIHPFVIMLTVPLGLVGALLGLHFSGSTINIYSQIG 908

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG S  + +++ +      +L    I F+  I ++ ++ L   V TS+   +S +P
Sbjct: 909  IVMLIGLSAKNGILIVEFAN---QLRDKGIEFKQAIIQAASQRLRPIVMTSLTTVMSSVP 965

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +    G        I +  G++ A   ++FI       +     
Sbjct: 966  LVMATGPGAESRMVIGIVVFTGVIAATVLTLFIVPCAYYALAKKTQ 1011



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 90/248 (36%), Gaps = 7/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       Q  +  F+        L  ++    +++           KI + +P 
Sbjct: 254 VRLNEVADVKLEAQDEENLFRGNGRNMIGLGIIKQAKANTLTVVENARAELNKIKQSLPQ 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
            T             E I +    +IIS I +++ I++        L    T+ + +  +
Sbjct: 314 GTTIEDSYDSSIFISESINEVYRTLIISMILVVLVIYLFLGNLRATLIPALTVPVALIGS 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             F    G   NL  + A++  IG  V+D +V+ + +    +             +   E
Sbjct: 374 FMFLYAMGYSINLLTLLALVLAIGLVVDDAIVMLENIH---RRIELGEPRLLAAYRGARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                + T++      +P+       GS+   FA+ ++  ++ ++ +++ ++  +   + 
Sbjct: 431 VGFAIIATTLVLIAVFVPLVFMEGRVGSLFTEFAMAVSAAVIFSSITALTLSPALCSKLL 490

Query: 825 DWRAKNAR 832
               K ++
Sbjct: 491 KPSNKESK 498


>gi|315585947|gb|ADU40328.1| protein-export membrane protein SecF [Helicobacter pylori 35A]
          Length = 323

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVVVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEDRFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|239995120|ref|ZP_04715644.1| Acriflavin resistance protein [Alteromonas macleodii ATCC 27126]
          Length = 266

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 93/246 (37%), Positives = 153/246 (62%), Gaps = 4/246 (1%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD---SVAQTRVLEMVKKKITEIV 646
               +R+ +ES     ++ Q +  E ++L+R            +  +  + +K+ I++  
Sbjct: 4   TTDELRNVIESNGFDQVAIQEYGSEHHYLLRAPVLDSSGELENSNAKQTDALKRAISQAD 63

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
              +    ++VGPK+S       I+ ++I+   ML+Y+W RF+ +FA  A+ T+ILD+TK
Sbjct: 64  SEVSFDKIDMVGPKVSGGFAELSILALLIAGGGMLVYLWARFEAHFASAALLTVILDLTK 123

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+GFFAL GIEFNLTAVAA+L LIGYS+NDKVVV DR+R+ ++L        D I++++N
Sbjct: 124 TIGFFALTGIEFNLTAVAALLALIGYSINDKVVVLDRIRELLRLDPNK-PLADTINEAVN 182

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            TL R+V+TS+   +++LPMA++GG  + SFA+PM F +V+  SS++FI + +L  +   
Sbjct: 183 STLSRTVFTSVTTLLALLPMAIFGGDAVESFAVPMVFAVVIGTSSTLFITSTLLYLLGSR 242

Query: 827 RAKNAR 832
           R K  +
Sbjct: 243 REKQGK 248


>gi|319787056|ref|YP_004146531.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465568|gb|ADV27300.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 1048

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 67/613 (10%), Positives = 159/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +     
Sbjct: 9   PVFAWVVAILISLAGVISIL-----GLGVESYPNIAPP-------------QVTVSATYP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                 ++      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASAETVEKAVTQVIEQQLTGIDHLLYFSSSSSATGRASITLTFETGTDPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        +++     D         +     + I+QI    
Sbjct: 111 VSLATPRLPTEVTQQGVVVAKANAGFLMVVGLISDNPAVDRNALNDLNGSRVIEQISRIP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P RL+    +  ++       N        G     +   
Sbjct: 171 GVGSVQQFGA-EYAMNIWLNPDRLQGYGLSATQVLSAIRAQNVQFAAGSIGSDPAPEGQA 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +        
Sbjct: 230 FTATVSAESRFS-------------SPEQFEEIILRADEDGTTVRLKDVARVAFGPGAYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                    I           +     +        L++        +    +      S
Sbjct: 277 FDTRYNGKPIGAFAIQLLPGANALNVADAVRAKMDELQSTFPAGVTWMSPYDSTTFVKIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   LS++G T+   ++ 
Sbjct: 337 IEEVVKTLLEAVVLVFLVMLIFLQNLRATIIPTLVIPVALLGTFVGLSIIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IG+ VD  I+V E +      +  +   +      +    +    +      +  
Sbjct: 397 ALVLSIGIVVDDAIVVIENVERIMTEEGLAPRDATIKAMGQITGAVVAITVVLAAVFIPS 456

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDINP 527
              G   G   + FA+T+ +++  S F A+    A+    ++           ++ +   
Sbjct: 457 ALQGGAAGEIYKQFALTIAIAMGFSAFLALGFTPALCATFLKPSHHANSNVVFRTFNKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     I      A  W +   +L  +C   L    G     + +G     V    
Sbjct: 517 DRISRTYVGHIGSAVRHAPRWMILFVVLAVLCGFSLSRMPGSFLPEEDQGYALAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
              L   +     
Sbjct: 577 GASLQRTQDVFAQ 589



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 79/235 (33%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +                 +++     +     ++    P 
Sbjct: 260 VRLKDVARVAFGPGAYGFDTRYNGKPIGAFAIQLLPGANALNVADAVRAKMDELQSTFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                +        +  I + +  ++ + + + + + I  +     +     + + +  T
Sbjct: 320 GVTWMSPYDSTTFVKISIEEVVKTLLEAVVLVFLVMLIFLQNLRATIIPTLVIPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               ++ G   N   + A++  IG  V+D +VV + +     +    ++ RD   K++ +
Sbjct: 380 FVGLSIIGFTINQLTLFALVLSIGIVVDDAIVVIENV--ERIMTEEGLAPRDATIKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +P A+ G   G +   FA+ +A  +  +A  ++     +
Sbjct: 438 ITGAVVAITVVLAAVFIPSALQGGAAGEIYKQFALTIAIAMGFSAFLALGFTPAL 492



 Score = 45.8 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/114 (14%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++     ++T+IG +  + +++ +   +         + RD   ++        + 
Sbjct: 911  GLPNDIFFKIGLITIIGLAAKNAILIVEFAVEQRAA---GKTLRDATIEAARLRFRPILM 967

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            TS A  + V+PMA+    G +   +    +  G++ A    + +     + +  
Sbjct: 968  TSFAFIMGVVPMALSTGAGANARHAIGTGVIGGMLFATFLGLLMIPVFFIVVRR 1021


>gi|119468489|ref|ZP_01611580.1| putative acrB/acrD/acrF acriflavin resistance family protein
           [Alteromonadales bacterium TW-7]
 gi|119447997|gb|EAW29262.1| putative acrB/acrD/acrF acriflavin resistance family protein
           [Alteromonadales bacterium TW-7]
          Length = 1032

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 72/629 (11%), Positives = 180/629 (28%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   GL+           L  +P                         
Sbjct: 9   KRPVFAIVINLLLLTFGLVA-----FSMLPLREYPDIETPIV---------NISTSYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S ++       S R  ++ IT+ F  SR  +  ++ V   +  
Sbjct: 55  SAEIIETKITQVIENRISGIEGIKSINSSSRNGRSNITIEFNISRDIDAASNDVRERVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    +   +  +   E  I     N +     +++ S    R  +D++ + +   
Sbjct: 115 ALDSLPEQVRPPEVSKSNSDESPIAWFVLNSE--TMDSLQLSDYAQRFIVDRLAVVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +   +     T++ +       N               +     
Sbjct: 173 NVRIGGERQYAMKIWLNRQAMAARGITSSDIENTLRTENVELPAGEIESIDRDFTVRT-- 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A            +                ++    A      
Sbjct: 231 -----------------ARSYKDQRDFKNLVIKRGEDGYLVRLGEVADVQLEAADDESLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +A+ +    ++ A      ++              +      S S 
Sbjct: 274 RGNGRNMIGLGIVKQAKANTLTVVDNARSELEKIKRNLPEGTTIQDSYDSSVFIKESISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI  GLV++V+F+ +   +  L+   ++ + ++ +   L  +G ++ L ++  +V
Sbjct: 334 VYSTLAISMGLVVLVIFLFLGNIRATLIPAVTVPVALVGSFMFLLAMGYSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I       +    +   G       I  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVMLENIHRRIELGEPPLLAAYRGAREVGFAIVATTLVLISVFVPLVFMD 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FA+ +  ++  S  TA+++  A+   +++     +     + R F   +  
Sbjct: 454 GRIGALFTEFAMAVSAAVFFSSVTALTLAPALCSKVLKSADKPNKFSQWMDRQFTKLERS 513

Query: 539 AI-----QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                     +     V + +   +    LL         + +G   + +          
Sbjct: 514 YRNSLSTNMTKKWGLLVSLVLAGFVSYSLLLQVPSELTPKEDRGTFFIMMSGPEGASYEN 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
             +N+  ++   + +         LVR+ 
Sbjct: 574 NAANMAKIEERLMPYSESGELSRVLVRVP 602



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 64/157 (40%), Gaps = 9/157 (5%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIG 731
            +++     + +  +F+ +     +  L + +      F L   G+  N+ +   ++ LIG
Sbjct: 856  VLALTVTFLVLAAQFESFMHPF-VIMLTVPLGLMGAMFGLWSTGLTLNIYSQIGIVMLIG 914

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             S  + +++ +      +L    + F + I ++  + L   + TS+   +S +P+ +   
Sbjct: 915  LSAKNGILIVEF---TNQLRDKGVEFSEAILQAATQRLRPIIMTSLTTVMSSVPLVLASG 971

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             G        + +  G++V+   ++F+       +  
Sbjct: 972  PGAESRMVIGVVVFTGVIVSTLLTLFVVPAAYYALAR 1008



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 76/208 (36%), Gaps = 11/208 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IR 687
                 LE +K+ + E   +    ++ +   +   E+     + + +  + + +++  IR
Sbjct: 298 DNARSELEKIKRNLPEGTTIQDSYDSSVFIKESISEVYSTLAISMGLVVLVIFLFLGNIR 357

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                A+     L+      L      G   NL  + A++  IG  V+D +V+ + +   
Sbjct: 358 ATLIPAVTVPVALVGSFMFLLA----MGYSINLLTLLALVLAIGLVVDDAIVMLENIH-- 411

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +             +   E     V T++      +P+       G++   FA+ ++  
Sbjct: 412 -RRIELGEPPLLAAYRGAREVGFAIVATTLVLISVFVPLVFMDGRIGALFTEFAMAVSAA 470

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++ +++ +A  +   +     K  +
Sbjct: 471 VFFSSVTALTLAPALCSKVLKSADKPNK 498


>gi|308183698|ref|YP_003927825.1| preprotein translocase subunit SecF [Helicobacter pylori PeCan4]
 gi|308065883|gb|ADO07775.1| preprotein translocase subunit SecF [Helicobacter pylori PeCan4]
          Length = 323

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVVVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVIALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIIFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNATQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|90411110|ref|ZP_01219123.1| putative protein-export membrane protein SecF [Photobacterium
           profundum 3TCK]
 gi|90327956|gb|EAS44277.1| putative protein-export membrane protein SecF [Photobacterium
           profundum 3TCK]
          Length = 299

 Score =  184 bits (467), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 81/276 (29%), Positives = 147/276 (53%), Gaps = 6/276 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R++   +SI   + SI L+ T GLN+G+DF GG+   V  +  +  S +   L++   
Sbjct: 10  KWRYFTSAVSITLMLVSILLVATKGLNWGLDFTGGVVSEVQLSSKITSSEIEPLLKAGLH 69

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            D++         +++R           +     + + +  I    T+ NT IVGP++ +
Sbjct: 70  QDVAVIASGEPGRWVLRYAIPETGQELPS-----ITEMLAPISSDITVLNTSIVGPQVGQ 124

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + +++  + +L Y+  RF+W  A G++  L+ D+   LGFFAL  +EFNLT +
Sbjct: 125 ELADQGGLALLVCMLCILGYLSYRFEWRLASGSLFALLHDVVFVLGFFALTQMEFNLTVL 184

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AAVL ++GYS+ND +++ DR+R+ +       S + + +++I  T  R++ TS    ++V
Sbjct: 185 AAVLAILGYSLNDSIIIADRIRELLIAKPK-WSIQKINNEAIAATFSRTMVTSGTTLMTV 243

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             + + GG  +  FAI M  GI+    SSI +   +
Sbjct: 244 GALWLLGGGPLEGFAIAMFIGIITGTWSSISVGTTL 279


>gi|21230896|ref|NP_636813.1| RND multidrug efflux transporter MexF [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769105|ref|YP_243867.1| RND multidrug efflux transporter MexF [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21112507|gb|AAM40737.1| RND multidrug efflux transporter MexF [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66574437|gb|AAY49847.1| RND multidrug efflux transporter MexF [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1056

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 153/547 (27%), Gaps = 35/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +P   +  +P  +P +              V     
Sbjct: 10  RPIFAAVLSIIIFAAGLIA-----MPLLPISEYPEVVPPSVQ---------VRAVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVVTVTFKPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +    ++  S     +  D++     
Sbjct: 114 SQAQARLPEDVRRQGVTTQKQSPTLTMVVHLTSPKGKYDSLYLSNYATLKVKDELSRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP ++     T + +       N        G   + +    
Sbjct: 174 VGQIQIFGAGDYAMRIWLDPDKVAARGLTASDVVAAIREQNVQVSAGQLGAEPMPNKSEF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  ++                +    +                 +         
Sbjct: 234 LLSINAQGRLTTEE-------------EFGNIVIRSGTSGEIVRLSDVARLELGAGKYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L +              +     +      A L                      S 
Sbjct: 281 RSQLDSKSAVGMGVFQSPGANAIELSDAVRAKMAELEKQFPQDMAWSAAYDPTIFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T A L +LG ++   ++ G
Sbjct: 341 KAVVSTLLEAVLLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAALYVLGFSINTLTLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++           L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAMLLKAHDAPKDGPTRLIDRLFGWI 520

Query: 537 CIAIQFM 543
                  
Sbjct: 521 FRPFNRF 527



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTLLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+      G  V     I +  G+
Sbjct: 958  -LEMHGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVFGHGAGAEVRSVTGITVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDW 826
            +      +F+     + +  W
Sbjct: 1017 LGVTLFGLFLTPVFYVALRKW 1037



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     + G   N   +  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSVVGTFAALYVLGFSINTLTLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAVWG--GSVIGSFAIPMAFGI 805
                +S      +++ E  G  +  ++   A    +   + G  G     FA+ +A   
Sbjct: 425 E---GLSPLAAAHQAMREVSGPIIAIALVLCAVFVPMA-FLSGVTGQFYKQFAVTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAINSLTLSPALAAMLLK 500


>gi|115379879|ref|ZP_01466941.1| protein-export membrane protein SecD [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822779|ref|YP_003955137.1| protein-export membrane protein secd [Stigmatella aurantiaca
           DW4/3-1]
 gi|115363116|gb|EAU62289.1| protein-export membrane protein SecD [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395851|gb|ADO73310.1| Protein-export membrane protein SecD [Stigmatella aurantiaca
           DW4/3-1]
          Length = 591

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 174/600 (29%), Positives = 284/600 (47%), Gaps = 89/600 (14%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDR------------FPSAMPKNR--ISLG 47
           R   W   +   +    +   +P +   ++LDR             P+  P  +  ++LG
Sbjct: 3   RGWWWKFGVIVAVTLGTVWFLVPTYYSLAVLDRSERNNLAVLEERLPAWAPPAKYRLNLG 62

Query: 48  LDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL---KKEGIGVFSMRQIQNKITLSFAD 104
           LDL+GG H+V+ VD    +    +    ++  ++   KK G         +  +TL+ AD
Sbjct: 63  LDLQGGIHMVMRVDTKTALQKRTERRGQQIVRYITQDKKLGELKADSNPERLTLTLTAAD 122

Query: 105 SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
               + I  +V                  L    ++                  A++Q+M
Sbjct: 123 PATMDAIEKEVLTTFNDFTKVGREGATLTLAPDESQTNFF-----------RGEAVDQAM 171

Query: 165 EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK 224
            +IR RID+ G++E  ++++G+  I I LPG  DP + ++L+GTTA++ F  V   N   
Sbjct: 172 LVIRNRIDKWGVAELDVRKMGTDSIQISLPGRSDPEQAKELVGTTAQLEFRMVDDTNPAF 231

Query: 225 GFMFGVRFLRDSDGN--------------------------------------------- 239
                 +     + N                                             
Sbjct: 232 FQQMFEKTAPPENSNITVTSEEGFPQLQGPNREALLAYVNDKVPEGREVLLECVANPLKK 291

Query: 240 -------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                   YLVE +  ++G  L+ A A F     +P V+I+FD  GAR F  +T   +G+
Sbjct: 292 NECLSYRSYLVEKESPLTGESLSSADARFSELN-EPEVNITFDAAGAREFERLTEAGVGR 350

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISG--------NFTIETAGILAAMLRAGSLPIKL 344
            +A++LD  V +AP IN+ I  G A+I+               A  LA +L+AG+LP  +
Sbjct: 351 RMAIILDDYVQSAPRINEKIAGGSARITMGNPGGKSREEWFSEAQTLALVLKAGALPAPV 410

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
              E R VGA +G + I KG+ A + GL L+V FM + Y   GL+AD ++ LN +L LA 
Sbjct: 411 TTGEIRQVGASMGDELIRKGSLAAIVGLALVVAFMALYYKGAGLIADAALLLNGLLILAG 470

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L++  ATLTLP IAG VL +G+AVD+N+L+NERIREE    ++   ++D G+ RA+ TIF
Sbjct: 471 LAIFNATLTLPGIAGFVLTLGVAVDANVLINERIREELSHGKTARQAVDQGYDRAFWTIF 530

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           DS++TALIA  +LF  G G +RGFA T+ + ++ S++T+I + R +  + +  +  +++ 
Sbjct: 531 DSHVTALIAGFILFATGTGPIRGFATTLIVGLIASLYTSIVVTRTITTYFVHGRNAQTVS 590



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/277 (17%), Positives = 98/277 (35%), Gaps = 6/277 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S+  +      L    +N   D  G  +   L    V   +     + +Q      +   
Sbjct: 312 SLSSADARFSELNEPEVNITFDAAGAREFERLTEAGVGRRMAIILDDYVQSAPRINEKIA 371

Query: 613 GEKNFLVRLQYQPGDSVA--QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
           G    +                     +  K   +    T      VG  +  ELIRKG 
Sbjct: 372 GGSARITMGNPGGKSREEWFSEAQTLALVLKAGALPAPVTTGEIRQVGASMGDELIRKGS 431

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           +  I+    ++ ++ + +K    L A   L+L+    L   A+F     L  +A  +  +
Sbjct: 432 LAAIVGLALVVAFMALYYK-GAGLIADAALLLNGLLILAGLAIFNATLTLPGIAGFVLTL 490

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G +V+  V++ +R+R+ +   +   + R  +D+  +        + + A I+   +   G
Sbjct: 491 GVAVDANVLINERIREEL---SHGKTARQAVDQGYDRAFWTIFDSHVTALIAGFILFATG 547

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              I  FA  +  G++ +  +SI +   I  +    R
Sbjct: 548 TGPIRGFATTLIVGLIASLYTSIVVTRTITTYFVHGR 584


>gi|242238456|ref|YP_002986637.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           dadantii Ech703]
 gi|242130513|gb|ACS84815.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           dadantii Ech703]
          Length = 1047

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 74/686 (10%), Positives = 183/686 (26%), Gaps = 49/686 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  M+   G L  L     +  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIMVMLTGTLAIL-----KLPIAQYPTIAPPA-------------IQITATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  LQ      +   +        +   S      +IT++F      +    +V  
Sbjct: 50  PGADAKTLQDTVTQVIEQNMSGLDNMLYMSSNSDSSGSVQITVTFDSKANPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         +++     +       + +  +     D I   
Sbjct: 110 KLQLAMPLLPQEVQQQGISVQKSSSSFLMVLGFISNDKNMTQQDIADYVGSNIKDPISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     TTA +     + NN       G        
Sbjct: 170 LGVGDTQLFGAQ-YAMRVWLDPDKLNNYQLTTADVVTAITVQNNQIAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +        +        I       
Sbjct: 229 KMNASIIAQTRL-------------NSPEQFGNILLKVNQDGSQVRLKNVARIELGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L          +           
Sbjct: 276 SVVARFNGQPAAGLGIRLATGANALDTAAAVKAEIAKLEQNFPEGMKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS+ G ++   ++
Sbjct: 336 SIYEVLKTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAILSVFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMAEEKLSPKEATRKSMGQIQGALVGIALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  S+++S+  A+ +  A+   I++     +        F  
Sbjct: 456 MAFSGGSTGAIYRQFSVTIVSSMVLSVLVALILTPALCATILKPIDHHAEKKGFFGWFNR 515

Query: 534 IPDCIAIQFMRAR--------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           + D     +  +          + V    + +  ++  +         + +G +   V  
Sbjct: 516 LFDKSTHHYTNSVANILRATGRYVVVYLFIVAGLAVMFMRLPSSFLPQEDQGVLLTMVQL 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                    +  L+ +    ++ +  + +  F V      G           +       
Sbjct: 576 PVGSTQESTQKVLDQVNDYYLTHEKENVKSVFTVNGFGFAGRGQNMGIAFASLNDWDERK 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIV 671
              + +            ++    ++
Sbjct: 636 GAANKVDAIIGRAFGNFSQIKEALVI 661



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   +  +        L        +++     ++    K+ +  
Sbjct: 258 SQVRLKNVARIELGGESYSVVARFNGQPAAGLGIRLATGANALDTAAAVKAEIAKLEQNF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 318 PEGMKVVYPYDTTPFVKISIYEVLKTLLEAIVLVFVVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++FG   N   + A++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFAILSVFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMAEEKLSPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +PMA  GGS       F++ +   +V++   ++ +   +
Sbjct: 436 GQIQGALVGIALVLSAVFVPMAFSGGSTGAIYRQFSVTIVSSMVLSVLVALILTPAL 492



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 71/194 (36%), Gaps = 7/194 (3%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIY 683
            G++ A     E +    +    L      +  G      L       +II  + +  L  
Sbjct: 826  GEAAAGKSTGEAMALMESLATQLPPGVGFDWTGMSFQERLAGNQAPALIIISAIVVFLCL 885

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +   W      +  + L I   +   +L G+E ++     +LT IG S  + +++ + 
Sbjct: 886  AALYESWSIPFSVMLVVPLGIFGAVMAASLRGLENDVYFKVGLLTTIGLSAKNAILIVEF 945

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             +  M+         +   ++I   L   + TS+A  + V+P+ +    G     +    
Sbjct: 946  AKDLMEKENKG--LIEATLEAIRMRLRPILMTSLAFILGVVPLVISTGAGSGAQNAVGTG 1003

Query: 801  MAFGIVVAASSSIF 814
            +  G++ A   +I+
Sbjct: 1004 VMGGMITATVLAIY 1017


>gi|325914019|ref|ZP_08176375.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325539788|gb|EGD11428.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 1056

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/547 (11%), Positives = 154/547 (28%), Gaps = 35/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +P   +  +P  +P +              V     
Sbjct: 10  RPIFAAVLSIIIFAAGLIA-----MPLLPISEYPEVVPPSVQ---------VRAVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLMVTVTFKPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +    ++  S     +  D++     
Sbjct: 114 SQAQARLPEDVRRQGVTTQKQSPTLTMVVHLTSPKGKYDSLYLSNYATLKVKDELSRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P ++     T + +       N        G   + +    
Sbjct: 174 VGQIRVFGAGDYAMRIWLNPDKVAARGLTASDVVAAIREQNVQVSAGQLGAEPMPNKSDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  ++                +    +                 +         
Sbjct: 234 LLSINAQGRLTTEE-------------EFGNIVIRSGNSGEIVRLSDVARLELGAGNYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +      A L                      S 
Sbjct: 281 RSQLDNQNAVGMGVFQSPGANAIELSDAVRAKMAELEKQFPQDMAWSAAYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   S+ G
Sbjct: 341 SAVVHTLLEAVLLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLTPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++         + L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAMLLKAHDAPKDGPSRLIDRLFGWL 520

Query: 537 CIAIQFM 543
                  
Sbjct: 521 FRPFNRF 527



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTLLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+      G  V     I +  G+
Sbjct: 958  -LEMHGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVFGHGAGAEVRSVTGITVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      +F+     + +  W  +  
Sbjct: 1017 LGVTLFGLFLTPVFYVALRKWVTRRG 1042



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 56/143 (39%), Gaps = 14/143 (9%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSVVGTFAALYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                ++      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 425 E---GLTPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASS----SIFIAAPILLFIYD 825
           ++       S+ ++  +   +  
Sbjct: 478 ISTVISAINSLTLSPALAAMLLK 500


>gi|261838832|gb|ACX98598.1| protein-export membrane protein [Helicobacter pylori 51]
          Length = 323

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 156/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVVVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEMLI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|225848938|ref|YP_002729102.1| protein-export membrane protein SecD [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643420|gb|ACN98470.1| protein-export membrane protein SecD [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 512

 Score =  184 bits (467), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 152/530 (28%), Positives = 258/530 (48%), Gaps = 45/530 (8%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L   +  +G +  +    P                 LGLDL+GG  + L+VD D  +  
Sbjct: 9   LLVIFLVLVGSIYVMMTKTP----------------KLGLDLQGGISITLKVDIDKVIKD 52

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
                + ++    K+  I + S +   + + L   D    +   + +             
Sbjct: 53  QYLNVAKDIEKKFKENNIELLSSKLENDTLKLILLDPTKIDKAVEVLKKEF--------- 103

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                L+V +++  I++  +   ++++ +  ++Q++E +R RIDQ G   + I + G  R
Sbjct: 104 ---PQLVVESSQDSITVRFTDWELNRIKTQTMKQAVETLRNRIDQFGTLSANIAQKGKDR 160

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           IL+++PG  D  R + ++G TA++   +V+ +   K  +         D  + L   +  
Sbjct: 161 ILVEIPGVIDIERAKAIIGKTAQLELKEVVDSAYSKEELLKKYPNGIPDDLELLEGQEEV 220

Query: 249 ISGIHLNGA----------------TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
           ++G  +                         +   P V+      GA  F E T+  IGK
Sbjct: 221 VNGQTVKEWFLVKKTPVITGAMLKDARTALDQGGNPAVNFELTSEGAEIFGEATQKMIGK 280

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            LA+VLDG+V++APVI     +   QI+G F+ E A  LA +LRAG+LP  ++IVEE  +
Sbjct: 281 RLAIVLDGKVMSAPVIRS-RITSSGQITGRFSTEEANDLAVILRAGALPAPVSIVEESVI 339

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG +SI K   A +    L+ LFMI  Y   G VA  ++  N++L    + L   TL
Sbjct: 340 GPTLGKESIDKTLMAGIVSFTLVGLFMIYRYALSGFVAVIALVFNLMLLWVAMLLFDITL 399

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAGI+L IG+ VD N+++ ERI+EE  + +++  SL+ GF + +  IFDS++T +I
Sbjct: 400 TLPGIAGIILNIGMGVDGNVVIFERIKEELHQGKTLRVSLEEGFKKGFQAIFDSHVTVII 459

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           A + L  FG   ++GFA T+ +   I++FTA+ + + M+ F I  KK   
Sbjct: 460 AALALLEFGNAPLKGFAATLSIGTFINLFTAVFLTKMMLDFTIGGKKYLK 509



 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 77/166 (46%), Gaps = 4/166 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
            ++GP + +E I K ++  I+S   + +++  R+       A+  L+ ++        LF
Sbjct: 337 SVIGPTLGKESIDKTLMAGIVSFTLVGLFMIYRYALS-GFVAVIALVFNLMLLWVAMLLF 395

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I   L  +A ++  IG  V+  VV+++R+++ +       + R  +++   +       
Sbjct: 396 DITLTLPGIAGIILNIGMGVDGNVVIFERIKEELHQ---GKTLRVSLEEGFKKGFQAIFD 452

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           + +   I+ L +  +G + +  FA  ++ G  +   +++F+   +L
Sbjct: 453 SHVTVIIAALALLEFGNAPLKGFAATLSIGTFINLFTAVFLTKMML 498


>gi|218677222|ref|YP_002396041.1| Protein export [Vibrio splendidus LGP32]
 gi|218325490|emb|CAV27665.1| Protein export [Vibrio splendidus LGP32]
          Length = 599

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 162/509 (31%), Positives = 271/509 (53%), Gaps = 39/509 (7%)

Query: 33  DRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
              P  +       I LGLDLRGG   +LEVD +   +   Q   DE+ S ++       
Sbjct: 114 PAAPKWLTDMGFAPIQLGLDLRGGVQFLLEVDIEPVYHAQAQAMVDEITSEVR-----YA 168

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
             + + N++   F      E     +                   L   ++K +++  S+
Sbjct: 169 RGKVVNNQVQFDFRTDADFEKAQKLIRQEF------------PQWLRNRSDKSLTLTQSE 216

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
                + +  ++Q+++I+R RI+++GI+E++IQR G  RI I+LPG QDP+  + ++G T
Sbjct: 217 EEQRTLRNLTVQQNLQIMRSRIEELGITEASIQRQGESRIRIELPGVQDPAAAKDVIGAT 276

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           A ++F+ V  N ++       + L+DSDGN+ +V+ K  +SG H+  A +          
Sbjct: 277 ASLAFYSVYDNATRS-----TQTLKDSDGNRVVVDRKAVLSGEHIIDARSGIGEMG-SAE 330

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPSGKA 317
           V+I+ D  G ++  E +R NIGKP+A V                        Q+    + 
Sbjct: 331 VNITLDSSGGKKMSEFSRHNIGKPMATVYSEYSRDRAGNSKQDSEVISVANIQSQLGSRF 390

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           +I+G  ++  A  LA +LRAGSL   + I+EER +G  LG++++  G  A+  GL L + 
Sbjct: 391 RITGAGSLADAQELALLLRAGSLTAPVTIIEERTIGPSLGAENVTNGFAALALGLGLTLT 450

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNE 436
           FM + Y + G VA+ ++ +N+     L++LL  A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 451 FMALWYRRLGWVANCALVVNMTTLFGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFE 510

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           RIR++ ++ +S   S+D GF  A+S+IFD+N+T +I  V L+  G G ++GFA+T+GL +
Sbjct: 511 RIRDKMKEGRSFASSIDRGFDSAFSSIFDANVTTMIVAVALYTIGNGPIQGFALTLGLGL 570

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           L SMFT I   RA++  +    +   + I
Sbjct: 571 LTSMFTGIFASRAIINLVWGRDQRHDVRI 599



 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 90/240 (37%), Gaps = 5/240 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    +       D    +    ++ L       G           +  +   +    TI
Sbjct: 360 SEYSRDRAGNSKQDSEVISVANIQSQLGSRFRITGAGSLADAQELALLLRAGSLTAPVTI 419

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +GP +  E +  G   + +     L ++ + ++      A   L++++T   G  
Sbjct: 420 IEERTIGPSLGAENVTNGFAALALGLGLTLTFMALWYR-RLGWVANCALVVNMTTLFGLI 478

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           AL  G    L  +A ++  +G +V+  V++++R+R  MK      SF   ID+  +    
Sbjct: 479 ALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKMKE---GRSFASSIDRGFDSAFS 535

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                ++   I  + +   G   I  FA+ +  G++ +  + IF +  I+  ++    ++
Sbjct: 536 SIFDANVTTMIVAVALYTIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRDQRH 595


>gi|328881163|emb|CCA54402.1| Protein-export membrane protein SecF [Streptomyces venezuelae ATCC
           10712]
          Length = 360

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 87/309 (28%), Positives = 146/309 (47%), Gaps = 14/309 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    +   F+  R    G+SIL +I +I  L   GLN GI+F+GG          V +
Sbjct: 10  RLHRGEVGYDFIGNRKIWYGLSILITITAIVALAVRGLNMGIEFQGGAVFTTP-KSDVSV 68

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S  +   E     D   Q         +R+Q    D+    +V   + K +         
Sbjct: 69  SQAQDYAEEASGHDAIVQKLGNG---SLRIQVGGLDTAQSDKVRTELAKDLNVPEDKI-- 123

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              E+VGP    ++  K   G+ +  I ++IY+ I F+W  A+ A+  LI D+T T+G +
Sbjct: 124 -AAELVGPSWGEQIATKAWTGLGVFMILVVIYLAIAFEWRMAVAALVALIHDLTITVGIY 182

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           +L G E  +  V  +LT++GYS+ D VVV+D +++  K  T     ++ +L ++SIN TL
Sbjct: 183 SLVGFEVTVGTVIGLLTILGYSLYDTVVVFDSLKEQTKDITKQTRYTYSELANRSINGTL 242

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ T++ A + V  +   GG V     +   ++ +  G+   A SSIFIA P++  + 
Sbjct: 243 VRSINTTVVALLPVAGLLFIGGGVLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLK 302

Query: 825 DWRAKNARI 833
           +       +
Sbjct: 303 EREPAIKAL 311


>gi|126642767|ref|YP_001085751.1| RND family drug transporter [Acinetobacter baumannii ATCC 17978]
          Length = 1029

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/527 (11%), Positives = 144/527 (27%), Gaps = 36/527 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKEG--- 85
             + ++P+  P               + +           ++      +   +       
Sbjct: 1   MPIAQYPTIAPPT-------------VTIAATYPGASAETVENTVTQIIEQQMNGLDGLR 47

Query: 86  -IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            I   S    Q  I L+F      +    +V   LQ   + L  D ++  +  T      
Sbjct: 48  YISSNSAGNGQASIQLNFEQGVDPDIAQVQVQNKLQSATALLPEDVQRQGVTVTKSGASF 107

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           + +             +    +     + +       +          +    DP++L  
Sbjct: 108 LQVIAFYSPDNNLSDSDIKDYVNSSIKEPLSRVAGVGEVQVFG-GSYAMRIWLDPAKLTS 166

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T + ++      N+       G             V  +  +               
Sbjct: 167 YQLTPSDIATALQAQNSQVAVGQLGGAPAVQGQVLNATVNAQSLL-------------QT 213

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +       +              +                             +   T
Sbjct: 214 PEQFKNIFLKNTASGAEVRLKDVARVELGSDNYQFDSKFNGKPAAGLAIKIATGANALDT 273

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E      + LR        + +          S      T      LV IV+F+ +   
Sbjct: 274 AEAVEQRLSELRKNYPTGLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNW 333

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  ++   ++ + V+ T A++++ G ++   ++  +VL IGL VD  I+V E +     +
Sbjct: 334 RATIIPTLAVPVVVLGTFAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENVERVMSE 393

Query: 445 NQSVF-CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISM 500
           + +    +      +    +           V + FFGG      R F+IT+  ++++S+
Sbjct: 394 DHTDPVTATSRSMQQISGALVGITSVLTAVFVPMAFFGGTTGVIYRQFSITLVTAMVLSL 453

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
             A++   A+   I++         N +   F          M   +
Sbjct: 454 IVALTFTPALCATILKQHDPNKEPSNNIFARFFRSFNNGFDRMSHSY 500



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 81/236 (34%), Gaps = 8/236 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +        L        +++     +E    ++ +  P 
Sbjct: 231 VRLKDVARVELGSDNYQFDSKFNGKPAAGLAIKIATGANALDTAEAVEQRLSELRKNYPT 290

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I   +  +I + I + I +++  + W   +     + + +  T
Sbjct: 291 GLADKLAYDTTPFIRLSIESVVHTLIEAVILVFIVMFLFLQNWRATIIPTLAVPVVVLGT 350

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N   + A++  IG  V+D +VV + +     +            +S+ +
Sbjct: 351 FAVINIFGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEDHTDPVTATSRSMQQ 408

Query: 768 TLGRSV-YTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  TS+      +PMA +GG   VI   F+I +   +V++   ++     +
Sbjct: 409 ISGALVGITSVLT-AVFVPMAFFGGTTGVIYRQFSITLVTAMVLSLIVALTFTPAL 463



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 75/232 (32%), Gaps = 17/232 (7%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-- 672
                             +       +KI   +P   +Q  +     +S E    G     
Sbjct: 792  NGVSSVNIQGTPAPGVSSGDAMKAMEKIIGKLPSMGLQGFDYEWTGLSLEERESGAQAPF 851

Query: 673  -VIISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALF-----GIEFNLTAV 723
               +S + + + +   ++     F++  +  L +     L +  +       +  N+   
Sbjct: 852  LYALSLLIVFLCLAALYESWSIPFSVLLVVPLGVIGAIVLTYLGMIIKGDPNLSNNIYFQ 911

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             A++ +IG S  + +++ +  ++   L        D    +    L   + T++A    V
Sbjct: 912  VAIIAVIGLSAKNAILIVEFAKE---LQEKGEDLLDATLHAAKMRLRPIIMTTLAFGFGV 968

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            LP+A+    G     S    +  G++ A    IF      ++I        +
Sbjct: 969  LPLALSTGAGAGSQHSVGFGVLGGVLSATFLGIFFIPVFYVWIRSIFKYKPK 1020


>gi|317178264|dbj|BAJ56053.1| preprotein translocase subunit SecF [Helicobacter pylori F16]
          Length = 323

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVIVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEMLI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIIFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|29347662|ref|NP_811165.1| multidrug efflux membrane fusion protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253572122|ref|ZP_04849526.1| multidrug efflux membrane fusion protein [Bacteroides sp. 1_1_6]
 gi|29339563|gb|AAO77359.1| multidrug efflux membrane fusion protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838302|gb|EES66389.1| multidrug efflux membrane fusion protein [Bacteroides sp. 1_1_6]
          Length = 1010

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 89/687 (12%), Positives = 191/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGFI-----GYSYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +       + I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T     ++   E   R              A +    
Sbjct: 233 L--------------------MHTADEFNNLIVKEDNNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYKRMEQMKKDLPEDVTYSYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKETVYVAFILVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K  S   +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYIRIEKGMSPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMQ 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF----LI 534
           G      R F+I +  S++IS F A++    +   ++  ++ ++        FF      
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQNWFYTKTEPFFEGMNRW 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  F+R R+  +  + +                  ++ +  I +       V    
Sbjct: 513 YSRSLAAFLRKRWLALPFTFITICLIGFLWNAIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISF---------QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S          +   G  N  + L+        Q  V E + K + +
Sbjct: 573 IRDYTEDINQLVDSILPDAEAVTARVSSGSGNVRITLKDMKDRDYTQMEVAEKISKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +    +         +  + ++
Sbjct: 633 KTMARSFVQQQSSFGGRRGSMPVQYVL 659



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        L G   N+ ++ A++  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +S ++   +   E     + T++       P+    G        F+I ++  
Sbjct: 410 YIRIEKGMSPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMQGMTGRLFREFSIVISGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   R K  
Sbjct: 470 VIISSFAALTFTPMLATKLLIKREKQN 496



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFASGEGANQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            VV+   +++I   I  +I   R K  +
Sbjct: 983  VVSTLLTMYIVPAIYSYISTNRIKITK 1009


>gi|307130251|ref|YP_003882267.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Dickeya dadantii 3937]
 gi|306527780|gb|ADM97710.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Dickeya dadantii 3937]
          Length = 1044

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 76/634 (11%), Positives = 172/634 (27%), Gaps = 50/634 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G +       PQ  + R+PS  P               + +    
Sbjct: 8   RPVFAWVIALFIVLLGTIAI-----PQLPIARYPSVAPPT-------------VSITASY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +      L       +K       S+    + +I+++F      E     V  
Sbjct: 50  PGATPQTMNDAVVGLIERELSSVKNLLYFESSVDTSGSAQISITFKPGTDPELAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V  +L    ++N L   +     ++L     D      +  S  + R  I+++   
Sbjct: 110 RIKSVEPRLPQTVRQNGLQVESASSGFLLLVSLTSDSGRFDQVALSDYLARNVIEELRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP++L     T   +S      N        G        
Sbjct: 170 EGVGRVQLFGA-EQAMRIWVDPNKLLSYGLTMNDLSTAITQQNAQIAPGRVGDAPTLPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +    +        R        +       
Sbjct: 229 RVTIPLTVQGQL-------------ETPEQFAAIVLRAREDGSRVVLADVARVELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                        A        +   T        A L+          +          
Sbjct: 276 GFSVRENGKDATAAAVQLAPGANAVRTAAAIAQRMAELKPSMPAGMGYSLPFNTAPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+++ +   ++ L+      + ++ T  ++   G ++ + ++
Sbjct: 336 SIEQVIRTLAEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALLGTFTVMLAAGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +     ++  S   +           I    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERLMAQERLSPKAATTQAMKEITGAIVGITLVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           + F  G      R F ++M +SIL S F A+++  A+   +          +       +
Sbjct: 456 MAFASGSVGVIYRQFTLSMAVSILFSAFLALTLTPALCATLLTPVADGHHEKRGFFGGFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                              R+    +  + L    +             + +G     + 
Sbjct: 516 RRFEQLTQHYAAGTRALLRRSGSMLLLFAALTGALAWIFRELPSDFLPQEDQGYFMTSIQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                  +  R  +++ +    S        + L
Sbjct: 576 LPSDATEARTRDVVKTYEQHIASRPGIASNMSIL 609



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 82/242 (33%), Gaps = 16/242 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L+ V       Q    S +    +            ++V     +     ++   +
Sbjct: 258 SRVVLADVARVELGAQSYGFSVRENGKDATAAAVQLAPGANAVRTAAAIAQRMAELKPSM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I + I  +  + + + + +++     R+    A+ A   L+
Sbjct: 318 PAGMGYSLPFNTAPFVKISIEQVIRTLAEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALL 377

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              T  L      G   N+  +  ++  IG  V+D +VV + +     +    +S +   
Sbjct: 378 GTFTVMLAA----GFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAQERLSPKAAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAA 817
            +++ E  G  V  ++    +V     +    +      F + MA  I+ +A  ++ +  
Sbjct: 432 TQAMKEITGAIVGITL-VLSAVFIPMAFASGSVGVIYRQFTLSMAVSILFSAFLALTLTP 490

Query: 818 PI 819
            +
Sbjct: 491 AL 492



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 59/146 (40%), Gaps = 7/146 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + +++S + + + +   ++ W   L  +  + L +   +    L  +  ++     +
Sbjct: 865  QAPMLLLLSMVVVFLVLAALYESWSIPLSVMLVVPLGLLGAVLAVILRDMPNDVFFKVGL 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  R   +L        D    +    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAR---QLRDQGHELVDAAVTAARLRLRPILMTSLAFALGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAA 809
             V  G       +    +  G+V A 
Sbjct: 982  MVASGASAETQHAIGTGVFGGMVSAT 1007


>gi|58617615|ref|YP_196814.1| preprotein translocase subunit SecD [Ehrlichia ruminantium str.
           Gardel]
 gi|58417227|emb|CAI28340.1| Protein-export membrane protein secD [Ehrlichia ruminantium str.
           Gardel]
          Length = 508

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 185/518 (35%), Positives = 298/518 (57%), Gaps = 23/518 (4%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             I+ +++C I + + LPNF+    L      +   +++LGLDL+GG +L+LE D  +++
Sbjct: 11  KPIVVTLLCTIAIYLVLPNFIDNKFL------ISNKKVNLGLDLQGGVYLLLEADFKEYL 64

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    DE+  FL  + I   S    ++K+ L   DS+  + I               
Sbjct: 65  KERMYGLYDEVNEFLLSKNIKYKSFDVYEDKLVLILKDSQDFDQIKSF------------ 112

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                KN+ ++  +  I I    +  + ++ + I  S+  IR+R+D+ G  E TI   G 
Sbjct: 113 ---NDKNVKISKQDVRIVISFYDSYKENLLKNIITDSISNIRRRLDKSGTKEITINSHGK 169

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYLVED 245
            RI +Q+PG  D S+++ LLG TAK++FH +                L+D  GN Y +  
Sbjct: 170 DRISLQIPGIHDTSQIKMLLGKTAKLTFHLLENVTQISSINPLTTVLLKDVRGNTYPILR 229

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
           KVEISG  L    ++        VV+   +   A++F ++T++N  KP A+VLDG VLTA
Sbjct: 230 KVEISGDSLVD-VSSGINSLGNVVVNFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTA 288

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           PVI   I +G  +ISGNFT+E+A  L+ +L++G+LP  L ++EE+ +G+ LG++ I +G 
Sbjct: 289 PVIRDPILTGSGEISGNFTVESAKELSILLKSGALPAPLKVIEEKTIGSSLGAEYIKQGR 348

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A++  +V +  F+I  YG +G++A   +  N+I  +A L+LL ATLTLP IAGI L +G
Sbjct: 349 LAMIVSVVAVSTFIIFFYGIFGVLAVIGLVFNIIFIVAALTLLQATLTLPGIAGITLTVG 408

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           ++VD+N+L+ ERI+EE R  + +  +++ GF  A STIFDSNIT LIA  ++F  G G V
Sbjct: 409 MSVDANVLIFERIKEELRSKKKLRWAVESGFKNAMSTIFDSNITTLIAAAIMFIMGSGPV 468

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            GFAIT+ + IL SMF+AI++ + ++   IR+  +K +
Sbjct: 469 SGFAITLSIGILCSMFSAITLTKMLIDLYIRFFNLKVL 506



 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 33/171 (19%), Positives = 79/171 (46%), Gaps = 5/171 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  E I++G + +I+S +A+  +I   +   F + A+  L+ +I   +    L  
Sbjct: 334 TIGSSLGAEYIKQGRLAMIVSVVAVSTFIIFFYGI-FGVLAVIGLVFNIIFIVAALTLLQ 392

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A +   +G SV+  V++++R+++ ++        R  ++      +     +
Sbjct: 393 ATLTLPGIAGITLTVGMSVDANVLIFERIKEELRSKKK---LRWAVESGFKNAMSTIFDS 449

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++   I+   M + G   +  FAI ++ GI+ +  S+I     +L+ +Y  
Sbjct: 450 NITTLIAAAIMFIMGSGPVSGFAITLSIGILCSMFSAI-TLTKMLIDLYIR 499


>gi|325927807|ref|ZP_08189032.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
 gi|325541797|gb|EGD13314.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
          Length = 1041

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 85/687 (12%), Positives = 182/687 (26%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL      L    ++++P   P               + +    
Sbjct: 8   RPNFAWVVAIFISLAGLLA-----LRTLPVEKYPEVAPP-------------QISISATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +       +   L           S      +IT++F            V   
Sbjct: 50  PGASAQVVNDAVTSVIEQELNGARDMLYYDSSSSNGSAQITITFQPGTDPNIAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI--SHAIEQSMEIIRQRIDQIGI 176
           ++   S+L     +  L         ++L              +  +    R   D+I  
Sbjct: 110 IRQSESRLPAAVTQLGLQVEQTTAGFLMLYSLVYKDATAAQDVVRLNDYAARVVNDEIRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    D   LR    +   ++      N        G R     
Sbjct: 170 VPGVGRVQFFGA-EAAMRVWVDTQALRGYGLSIVDVNNAIRAQNLQVAAGSLGERPGAHD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +                    +    I   +             +   L  
Sbjct: 229 QELTTTLVVRGL-------------MESPQEFGQIILRAQTNGAVVHLSDVAKLELGLEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T+         L           V   +     
Sbjct: 276 YQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRQRLQELSQRFPADITYSVPFDSSTFVN 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV +V+F+ +   ++ L+    + + ++ T A++ LLG ++ + S
Sbjct: 336 VAIRKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGTFAMMKLLGFSVNMMS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +      +  S   +     ++    I    +      +
Sbjct: 396 MFAMVLAIGILVDDAIVVVENVERLMAGEGLSPRDASIKAMTQVGGAIVGITLVLTAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L F  G      R F+  + +SIL S F A+++  A+    +     +       + F 
Sbjct: 456 PLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPALCATFLVPIDGRHEKKGFFAWFD 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL- 591
                +  +F R     V  +  + +    LL   GL Y    +  +         VD+ 
Sbjct: 516 RNFSVLTSRFDRLNHRLVRRAGRYMLVYAVLLCALGLAYVRLPEAFVPQEDEGYMIVDMQ 575

Query: 592 ----SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +       + Q  +         ++  +   +    S A   +     K  +E   
Sbjct: 576 LPPGASYSRTRAAGQQVNDYLAARPSMQDVTLVYGFSFSGSGANAAMAFPSLKDWSERGD 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             ++ +           +    I+ V+
Sbjct: 636 SESVASEVAAANAALGRISDATIMAVM 662



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 94/251 (37%), Gaps = 10/251 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V      L+      Q   G            G++VA    +    +++++  P 
Sbjct: 261 VHLSDVAKLELGLENYQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRQRLQELSQRFPA 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            IRK +  ++ +   + + +++  +   + L     + + +  T
Sbjct: 321 DITYSVPFDSSTFVNVAIRKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N+ ++ A++  IG  V+D +VV + +     +    +S RD   K++ +
Sbjct: 381 FAMMKLLGFSVNMMSMFAMVLAIGILVDDAIVVVENV--ERLMAGEGLSPRDASIKAMTQ 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI----L 820
             G  V  ++      LP+A   GSV      F+  +A  I+ +   ++ +   +    L
Sbjct: 439 VGGAIVGITLVLTAVFLPLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPALCATFL 498

Query: 821 LFIYDWRAKNA 831
           + I     K  
Sbjct: 499 VPIDGRHEKKG 509



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + +          + G+  ++     ++T+IG +  + +++ +  ++  
Sbjct: 888  SWAIPFSVMLIVPIGAIGATAAVWVAGLSNDVYFKVGLITIIGLAAKNAILIVEFAKE-- 945

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             L+       D   ++        V TS+A  + V+P+ +  G+   S    +  G++  
Sbjct: 946  -LHAQGARVPDAAMQAARLRFRPIVMTSLAFILGVIPLVIARGAGAASQN-ALGTGVIGG 1003

Query: 809  AS--SSI-FIAAPILLFI 823
                S++  +  PI    
Sbjct: 1004 MLAASTLGVVFTPIFFTW 1021


>gi|308187718|ref|YP_003931849.1| Multidrug resistance protein [Pantoea vagans C9-1]
 gi|308058228|gb|ADO10400.1| Multidrug resistance protein [Pantoea vagans C9-1]
          Length = 996

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 72/634 (11%), Positives = 173/634 (27%), Gaps = 33/634 (5%)

Query: 58  LEVDEDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIA 112
           +  +        L+      +   +        +   S    Q +ITL+F      +   
Sbjct: 3   ITANYPGASAQTLENTVTQVIEQNMTGIDNLMYMSSNSSNTGQAQITLTFTAGTNPDEAR 62

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
            +V   LQ    KL    +   +      + +I++             + S  +     D
Sbjct: 63  QQVQNQLQSALRKLPQAVQSQGVTVNKTGDSNILMVAFVSTDGSMDKQDISDYVASNIQD 122

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
            +   +   Q          +    DP++L     TT  +       N        G   
Sbjct: 123 PLSRIDGVGQVDAYGSQ-YAMRIWLDPNKLIAYSLTTDDVVSAIQSQNTQVAVGQVGGLP 181

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
             +       V  +  +                 +       +             ++  
Sbjct: 182 SVEKQALNATVNAQSML-------------QTPGQFRAITLKNNPDGSVVTLGDVASVAL 228

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                           +       +  +   T +        L           +     
Sbjct: 229 GAEKYDYLSRYNGQPASGLGVKLASGANEMNTDKLVRARIEELSHYFPHGLEAKIAYETS 288

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S +    T      LV  V+++ +   +  L+   ++ + +  T ++L   G ++
Sbjct: 289 PFVKASITDVVKTLLEAIVLVFGVMYLFMQNFRATLIPTIAVPVVLFGTFSVLYACGFSI 348

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
              ++  +VL IGL VD  I+V E +    + +  S   +      +    +    +   
Sbjct: 349 NTLTMFAMVLAIGLLVDDAIVVVENVERIMHEEGLSPRAATRKSMGQIQGALVGIALVLS 408

Query: 472 IATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYK 518
              V + FFGG      R F+IT+  ++++S+  A+ +  A+   +           R  
Sbjct: 409 AVFVPMAFFGGTVGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPVAKGEQPERRG 468

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                + +           +A    R   W +    +  + +   L        ++ +G 
Sbjct: 469 FFGWFNRHFNRNADRYERGVAGILRRGGRWLLLYLGIIGLMAFLFLRLPTSFLPLEDRGV 528

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
               V       L+   S +  ++   ++ +  +    F        G+     R+   +
Sbjct: 529 FLTQVQLPAGATLAQTASVVAKVEHYYLTEEKANVLSVFSTIGAGPGGNGQNVARLFVRL 588

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           K          T         +  +++    ++ 
Sbjct: 589 KDWEDRPGADRTSFAIIDRATQAFQKIKEGRVIA 622



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V S     +  D   +      + L        + +   +++    ++++   P 
Sbjct: 218 VTLGDVASVALGAEKYDYLSRYNGQPASGLGVKLASGANEMNTDKLVRARIEELSHYFPH 277

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ + + +   +++  + +   L     + + +  T
Sbjct: 278 GLEAKIAYETSPFVKASITDVVKTLLEAIVLVFGVMYLFMQNFRATLIPTIAVPVVLFGT 337

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     ++   +S R    KS+ +
Sbjct: 338 FSVLYACGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMHEEGLSPRAATRKSMGQ 395

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA +G   G++   F+I +   +V++   ++ +   +   + 
Sbjct: 396 IQGALVGIALVLSAVFVPMAFFGGTVGAIYRQFSITIVSAMVLSVLVAMILTPALCATLL 455

Query: 825 D 825
            
Sbjct: 456 K 456



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 68/185 (36%), Gaps = 8/185 (4%)

Query: 653 NTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
             +  G      L       +  IS + + + +   ++ W      +  + L +   L  
Sbjct: 812 GFQWTGASYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVVGALIA 871

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G+E ++     +LT++G S  + +++ +   +   + +      +   ++  + L 
Sbjct: 872 TWMRGLENDVYFQVGLLTVVGLSAKNAILIVEFANE---INSKGRELVESTLEASRQRLR 928

Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +    
Sbjct: 929 PILMTSLAFIFGVLPMAISSGAGSGSQHAVGTGVMGGMISATLLAIFFVPLFFVLVRRRF 988

Query: 828 AKNAR 832
               +
Sbjct: 989 PLKEK 993


>gi|323141728|ref|ZP_08076602.1| putative acriflavine resistance protein B [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413803|gb|EFY04648.1| putative acriflavine resistance protein B [Phascolarctobacterium
           sp. YIT 12067]
          Length = 1043

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 82/682 (12%), Positives = 198/682 (29%), Gaps = 41/682 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  +I  +G +           + ++P+                 +       
Sbjct: 8   RPVFAIVLAIIITLLGTIAGF-----SLPIAQYPNITKPRI---------SVNTNYVGAS 53

Query: 63  DDFVNGFLQMYSDELRSFL-KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D V   +    ++  S +     +   S    + ++ + F   +  +  + +V   +  
Sbjct: 54  ADIVEKAVAQTIEQKVSGVENMLNMSSVSTSSGEYELNVEFNLEKNADIASVEVQNRVSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +     + T  E   +I+       +    A+          +D +   +   
Sbjct: 114 ATSSLPSEVSGYGVTTAKESAETIMYFGLYSPKNTYDAMFLRTYADANFLDAVKRVKGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P ++ QL  T   +S      N        G R   D     Y
Sbjct: 174 TVGEYG-PEYAVRIWLNPEKMAQLGVTVTDVSNAIKTQNIQAAVGSIGNRPTVDKQERTY 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +  ++              T +   ++                 I +     L   
Sbjct: 233 SASAQGRLN--------------TPEEFGNVIIRSNNGDNLKLKDIATIKEGPRNDLVVS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L          S  +  +   T++    +     +        IV + N      S   
Sbjct: 279 KLNGGDSVVFPVSLTSDANAIETVKNIREVLKDAESRFPDDMKLIVIQDNTQFITESLEK 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+FM +   +  L+   ++ ++++ T A   +LG T+   +   ++
Sbjct: 339 VAHTFVEALILVILVVFMFLGSWRATLIPILAVPVSLVGTFASFVILGFTINTLTAFAMI 398

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +         S   +     +     +           + + F 
Sbjct: 399 LAIGLVVDDAIVVVEAVEHHIQENGMSPKEATYRAMNEVSGPVVAIAFVLSAVFIPVAFT 458

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-------KMKSIDINPLSR 530
           G   G   + FAIT+ +S+++S   A+S+  A+   I+  K         K++       
Sbjct: 459 GGTVGELYKQFAITISVSMMLSAIVALSLTPALCSLILVKKEEAPKGFIGKAVKAFDDWF 518

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              +   +       R   + ++ L  +             G        +  ++    +
Sbjct: 519 ARTLAKYVKNVEGCIRKSKLILTCLVVVVICIGFLAKATPTGFVPNEDQGMTAVSIALPE 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +      + +     + +   G KN +            +      V          ++
Sbjct: 579 GASSNRTQQIMAGLAQNMRKLPGVKNVMEVSGIDILSMGQKANAGMAVVTMEDYSKRSNS 638

Query: 651 IQNTEIVGPKISRELIRKGIVG 672
           +Q+   +   +  ++    ++ 
Sbjct: 639 VQDVIPMIFGMGAQIPDATVMA 660



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 92/261 (35%), Gaps = 8/261 (3%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + +       + L  + +  E  +   +  +   G+            +++   + + 
Sbjct: 247 GNVIIRSNNGDNLKLKDIATIKEGPRNDLVVSKLNGGDSVVFPVSLTSDANAIETVKNIR 306

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
            V K      P            +   E + K     + + I +++ +      W   L 
Sbjct: 307 EVLKDAESRFPDDMKLIVIQDNTQFITESLEKVAHTFVEALILVILVVFMFLGSWRATLI 366

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            I  + + +  T   F + G   N     A++  IG  V+D +VV + +     +    +
Sbjct: 367 PILAVPVSLVGTFASFVILGFTINTLTAFAMILAIGLVVDDAIVVVEAV--EHHIQENGM 424

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASS 811
           S ++   +++NE  G  V  +     +V     + G  +      FAI ++  ++++A  
Sbjct: 425 SPKEATYRAMNEVSGPVVAIAF-VLSAVFIPVAFTGGTVGELYKQFAITISVSMMLSAIV 483

Query: 812 SIFIAAPILLFIYDWRAKNAR 832
           ++ +   +   I   + +  +
Sbjct: 484 ALSLTPALCSLILVKKEEAPK 504



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 77/237 (32%), Gaps = 9/237 (3%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                   +  +        +         S      +E V K++             +  
Sbjct: 802  TPKNSSVVMTRFNGASAIQISGDPASGYSSGQAMAAIEEVAKQVLPNTYTYEWTGQSLDE 861

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             +      +  I+ +I   + +     +   W   L  + ++   +          G++ 
Sbjct: 862  IEAGSRSTQVFIISLIFVFLCLA---ALYESWTIPLAVLLSVPSAVFGCFLVQYARGLQN 918

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++     ++TLIG +  + +++ +  + NM      +       ++ +  L   + TS A
Sbjct: 919  DVYMQIGLITLIGLAAKNAILIVEYAKMNM---EQGMDVVHAAVEAAHVRLRPILMTSFA 975

Query: 779  AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +  LP+A+    G     S    +  G+ +A    IF+   + + +  + +   +
Sbjct: 976  FILGCLPLAIATGPGAGARVSMGNAVVGGMTIATLFGIFLIPVLFVVVERFFSHKKK 1032


>gi|298383470|ref|ZP_06993031.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 1_1_14]
 gi|298263074|gb|EFI05937.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 1_1_14]
          Length = 1010

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 90/687 (13%), Positives = 191/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLATVLTIIILLFGFI-----GYSYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +       + I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMAGYGITPIDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T     D+   E   R              A +    
Sbjct: 233 L--------------------MHTADEFNDLIVKEDNNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIADAVYKRMEQMKKDLPEDVTYSYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKETVYVAFILVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K  S   +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYIRIEKGMSPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMQ 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF----LI 534
           G      R F+I +  S++IS F A++    +   ++  ++ ++        FF      
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLIKREKQNWFYTKTEPFFEGMNRW 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  F+R R+  +  + +                  ++ +  I +       V    
Sbjct: 513 YSRSLAAFLRKRWLALPFTFITICLIGFLWNAIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISF---------QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S          +   G  N  + L+        Q  V E + K + +
Sbjct: 573 IRDYTEDINQLVDSILPDAEAVTARVSSGSGNVRITLKDMKDRDYTQMEVAEKISKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +    +         +  + ++
Sbjct: 633 KTMARSFVQQQSSFGGRRGSMPVQYVL 659



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        L G   N+ ++ A++  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +S ++   +   E     + T++       P+    G        F+I ++  
Sbjct: 410 YIRIEKGMSPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMQGMTGRLFREFSIVISGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   R K  
Sbjct: 470 VIISSFAALTFTPMLATKLLIKREKQN 496



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMSAIKDAALQRLRPILMTSASTVLGLIPLAFASGEGANQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            VV+   +++I   I  +I   R K  +
Sbjct: 983  VVSTLLTMYIVPAIYSYISTNRIKITK 1009


>gi|124268764|ref|YP_001022768.1| putative transmembrane multidrug-efflux system lipoprotein
           transmembrane [Methylibium petroleiphilum PM1]
 gi|124261539|gb|ABM96533.1| putative transmembrane multidrug-efflux system lipoprotein
           transmembrane [Methylibium petroleiphilum PM1]
          Length = 1073

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 66/549 (12%), Positives = 147/549 (26%), Gaps = 30/549 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I  +G +        +  +  +P   P   +                  
Sbjct: 10  RPIFAAVLSVFITLVGAIAIF-----KLPISEYPEVAPPQVV---------VRAQFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T+SF      E     V   +  
Sbjct: 56  PRVIAETVATPLEEQINGIENMLYMGSQASADGALTLTISFKIGTNPEVAETAVQNRVNR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + T        ++           A+           D +       
Sbjct: 116 ALPRLPEVVRQIGVTTEKSSPNLTMVVHMVSPDNKYDALYLRNYATLNVRDPLLRIPGMG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T+A +       N      + G     ++   Q 
Sbjct: 176 SVQTFGSGDYAMRIWLDPQKLSARGLTSADVVGAIREQNAQVAAGVVGAPPSPNNTEFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +S                   + +  D              +         G 
Sbjct: 236 AINTQGRLSSEQEF------------GDIIVRADTADGSVIRVRDLGRVELGPNTYSLGS 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+A   P     +          S   
Sbjct: 284 LLNNKEAAAIGIFQAPNSNALQLSNDVRATMERLKADFPPGVDYAIVYDPTRFVATSIEK 343

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T A+L  LG ++   ++ G+V
Sbjct: 344 VIHTLVEAIALVVLVVIVFLQTWRASIIPLLAVPVSIVGTFAVLLALGFSINTLTLFGLV 403

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +      V L F  
Sbjct: 404 LAIGIVVDDAIVVVENVERNIEAGLSPRDASVKAMQEVSGPIIAIGLVLCAVFVPLAFVS 463

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +             
Sbjct: 464 GLSGQFYKQFAVTIAISTVISAFNSLTLSPALSAILLKPHHAKKDWLTRGMDKVFGRFFG 523

Query: 539 AIQFMRARF 547
                  R 
Sbjct: 524 WFNRFFTRN 532



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 9/147 (6%)

Query: 690  WYFALGAITTL-ILDITKTLGFFALFGIEFNLTAV--AAVLTLIGYSVNDKVVVYDRMRK 746
               A+  I  + IL     +      G   +       A + L+G +  + +++ +  R+
Sbjct: 909  LPLAIILIVPMCILSAITGVWLSGFLGQPADNNIFTQIAFVVLVGLACKNAILIVEFARE 968

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
               L     S    + ++    L   + TS+A    V+P+ +    G  +  +  I +A 
Sbjct: 969  ---LEDHGRSTVKAVVEACRLRLRPILMTSIAFIAGVIPLVLSSGAGAEMRQAMGIAVAS 1025

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKN 830
            G++      +F+     + +     K 
Sbjct: 1026 GMLGVTVFGLFLTPVFYVLLRKLAPKK 1052



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T       G   N   +  ++  IG  V+D +VV + + +N++
Sbjct: 366 WRASIIPLLAVPVSIVGTFAVLLALGFSINTLTLFGLVLAIGIVVDDAIVVVENVERNIE 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S RD   K++ E  G  +   +   A    L       G     FA+ +A   V
Sbjct: 426 A---GLSPRDASVKAMQEVSGPIIAIGLVLCAVFVPLAFVSGLSGQFYKQFAVTIAISTV 482

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 483 ISAFNSLTLSPALSAILLK 501


>gi|170696634|ref|ZP_02887753.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
 gi|170138457|gb|EDT06666.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
          Length = 1070

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 67/541 (12%), Positives = 160/541 (29%), Gaps = 41/541 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  IG             ++++PS  P               + +    
Sbjct: 8   RPILAWVIAIVIMMIGGASI-----TTLPVEQYPSVAPA-------------SVQITATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   L        +   S    Q +ITL+F      +    +V  
Sbjct: 50  PGASAETVATTVTQVIEQKLSGIDHLLYMSSTSSSVGQARITLTFQQGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   S L    ++  +         +++   +       +I+    I  Q  D +   
Sbjct: 110 KVEQATSSLPETVQEQGVQVAKAANSFLMIVSLSSTDGSMSSIDLGNVIATQIEDPLTQI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP RL+ +  TT+ ++      N        G      + 
Sbjct: 170 NGVGDVTLFGAQ-HAMRIWLDPVRLQAVGLTTSDVTSAITNQNVQLSVGQIGGSPSTKTQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     ++                +    +        +        +       
Sbjct: 229 ALNATISASSLLT-------------TPAQFGAILLRVNSDGSKVMLKDVARVEVGADDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +     +        L A      +             
Sbjct: 276 STDSRLNGKPAASLAVKLASGANAMSVAKAVRAKLNELSAQLPRNVVVDYPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+    + + ++ T A++S +G ++ + S+
Sbjct: 336 SIEEVVKTLIEAVLLVFVVMYLFLQNLRATLIPTIVVPVALLGTFAVMSAVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +       +   + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERLIAEEKLSPVEATRRAMKQITGALIGITTVLIAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R F++T+  ++L+S+F A+++  A+   ++R   ++  +   +  +F 
Sbjct: 456 MAFFAGTTGAIYRQFSVTIVAAMLLSVFLALTLTPALCATLLRRADVEHHEKRGVLGWFN 515

Query: 534 I 534
            
Sbjct: 516 R 516



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 87/244 (35%), Gaps = 6/244 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V              +        L        ++++  + +     +++  +
Sbjct: 258 SKVMLKDVARVEVGADDYSTDSRLNGKPAASLAVKLASGANAMSVAKAVRAKLNELSAQL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P + + +         R  I + +  +I + + + + +++  +     L     + + + 
Sbjct: 318 PRNVVVDYPYDTTPFVRISIEEVVKTLIEAVLLVFVVMYLFLQNLRATLIPTIVVPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N+ ++  ++  IG  V+D +VV + +     +    +S  +   +++
Sbjct: 378 GTFAVMSAVGFSINVLSMFGMVLAIGLLVDDAIVVVENV--ERLIAEEKLSPVEATRRAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +PMA + G+       F++ +   ++++   ++ +   +   
Sbjct: 436 KQITGALIGITTVLIAVFIPMAFFAGTTGAIYRQFSVTIVAAMLLSVFLALTLTPALCAT 495

Query: 823 IYDW 826
           +   
Sbjct: 496 LLRR 499



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            + I    IS I + + +  +   W   +  I  + L +   +    L G+  ++     +
Sbjct: 897  QAIYLYAISLIVVFLCLAGLYESWSIPIAVILVVPLGVLGAVLGAHLRGLSDDIYFKVGL 956

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            L  IG S  + +++ +  +    L        +   ++    L   + TS+A    VLP+
Sbjct: 957  LATIGLSTKNAILIVEFAKD---LQAQGRGLIEATIEAARLRLRPILMTSLAFVFGVLPL 1013

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             +    G +   +    +  G++ A   +I
Sbjct: 1014 VISTGAGSASRHAIGTGVMGGMIAATVLAI 1043


>gi|330890881|gb|EGH23542.1| AcrB/AcrD/AcrF family transporter [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 1048

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 181/692 (26%), Gaps = 55/692 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPSLPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIFTLNYKDGSATKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGYGLSIDDVNAAIRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAGKGTLDN-------------PEEFGRIVLRANEDGSTVHLSDVARMAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPEGVEFSMPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPATATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +    +         +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGTFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V        S       + Q+ +    + +      + L +          +     K 
Sbjct: 575 DVQLPPGATRS---RTDLTAQLLENYMLSREATGAVTMLLGFSFSGMGENAGLAFPTLKD 631

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +E     +         +    L    ++ V
Sbjct: 632 WSERGKGQSAAEEAAAFNQHFAGLADGTVMAV 663



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 84/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R +     +++   P 
Sbjct: 262 VHLSDVARMAIGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSMPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPATATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A    + I  PI         +  
Sbjct: 1009 ATLLGV-ILVPIFFVWVLSVLRRK 1031


>gi|222081137|ref|YP_002540500.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
 gi|221725816|gb|ACM28905.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
          Length = 1051

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 79/689 (11%), Positives = 177/689 (25%), Gaps = 53/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L      LP   + R+P   P               + +  + 
Sbjct: 8   RPIFAWVVAIFITLAGILT-----LPLMPIARYPQVAPP-------------QITVSTNY 49

Query: 63  DDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTL 117
                      +    +E  + +                 + ++F           +V  
Sbjct: 50  PGATPEDIYQSVTRPIEEELNGVPGLLYFESVSEASGRIALNVTFETGTNVGEAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  +L     +  +         +++     +   + A+     + R  I ++   
Sbjct: 110 RIARVEPRLPSAVTQQGIRVDRAGTSFLMMVVLRSEDGRTDAVGLGDYLSRNVIGELRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP R+  L  T A ++      N        G        
Sbjct: 170 PGVGNAQLFATQRSM-RVWMDPDRMLGLNLTAADITNAITAQNAQVTAGRVGASPNLPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               +V  + ++                 +    I                 +       
Sbjct: 229 QTSAIVNVQGQL-------------RSPQEFDEIILRANPDGSTVRLRDVARVEVGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T E        L     P     V          
Sbjct: 276 NFASRLNGQPSANVGIQLTPTGNALATAEQVRATMEDLSRYFPPGLSYEVSYDTTPFVEV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   ++ ++    + + ++   A++   G ++ + ++
Sbjct: 336 SIEKVVHTLLEAIVLVFIVMFLFLQNIRYTIIPTLVVPVALLGACAVMYAAGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +     S+    I    +      + 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERIMAEEKLSPKEATKKAMSQITGAIIGITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      + F++TM +SIL S   A++   A+    ++             R F 
Sbjct: 456 MAFFPGAVGVIYQQFSLTMVVSILFSGLLALTFTPALCASFLKPVSHGHERKTFFFRGFN 515

Query: 534 IPDCIAIQFM---------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                  +           RA  + +    L        L         + +G +   + 
Sbjct: 516 RGFDSLTRRYSVGVGATVRRAGRFMLIYVALLGGLGWAYLQLPNSFLPNEDQGYLIAELQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A         R  +  ++   +        +N +    +    S     +  +  K  +E
Sbjct: 576 APAEASTDRTREAIRQMEGILMEESAI---RNVVAVSGFSYSGSGQNAGLAFITLKDWSE 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             P  +              +    +  +
Sbjct: 633 RGPSDSAAAIAARVNAKFAAIRDASVRAL 661



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 85/235 (36%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  + + +        +       G+++A    +    + ++   P 
Sbjct: 260 VRLRDVARVEVGGENYNFASRLNGQPSANVGIQLTPTGNALATAEQVRATMEDLSRYFPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I K +  ++ + + + I +++  +   + +     + + +   
Sbjct: 320 GLSYEVSYDTTPFVEVSIEKVVHTLLEAIVLVFIVMFLFLQNIRYTIIPTLVVPVALLGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  + A++  IG  V+D +VV + +     +    +S ++   K++++
Sbjct: 380 CAVMYAAGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERIMAEEKLSPKEATKKAMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +  ++      +PMA + G   VI   F++ M   I+ +   ++     +
Sbjct: 438 ITGAIIGITLVLTAVFIPMAFFPGAVGVIYQQFSLTMVVSILFSGLLALTFTPAL 492



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 6/128 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  + L +  ++    L G+  ++  +  ++ +IG S  + +++ +  +  +
Sbjct: 888  SWSIPLSVMLVVPLGVLGSVLAVMLRGLPNDIYFLVGLIAIIGLSAKNAILIVEFAKDLV 947

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
                   S R+   ++        + TS+A  + V+P+A+  G+   S       +  G+
Sbjct: 948  AE---GRSVREAAIEAARMRFRPILMTSLAFTLGVVPLAIATGASAASQNAIGTGVLGGM 1004

Query: 806  VVAASSSI 813
            + A   +I
Sbjct: 1005 ISATLLAI 1012


>gi|225164868|ref|ZP_03727089.1| acriflavine resistance protein B [Opitutaceae bacterium TAV2]
 gi|224800517|gb|EEG18892.1| acriflavine resistance protein B [Opitutaceae bacterium TAV2]
          Length = 1040

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 81/694 (11%), Positives = 187/694 (26%), Gaps = 45/694 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GLL           + ++P   P            G         
Sbjct: 8   RPVFAWVIAIIMMMGGLLAI-----RTLPISQYPMVAPPTI---------GIQARYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V        ++  + +        +     + ++TL+F      +    +V   LQ 
Sbjct: 54  AQTVQDTCTQIIEQKMNGIDNLRYMESTSNADGSMQLTLTFNQGTNPDIAQMQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++     +     A + S  I     + I       
Sbjct: 114 AMPVLPKEVQQEGVTVQKTSGNFLIIVGFVSEDGSMKAQDISDFIAASVQEPISRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P  L       + ++      N    G   G            
Sbjct: 174 DTQFFGSQ-YAMRIWINPDALNNYGLAISDITTAVTAQNAQISGGELGGLPAVPGQRLAA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 TIVTQTRLNTTD-------------EFADILLKVNADGSQVRLGDVARLELGGESYTVTP 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +       +  +   T     +    L          +           S   
Sbjct: 280 RLNGKPASGLGVKLASGANALETARLVHLKIDELSRFFPEGLKVVYPWDTSPFVRLSIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  L+   ++ + ++ T A+++  G T+   ++ G+V
Sbjct: 340 VVKTLIEAVVLVFIVMFLFLQNIRATLIPTLAVPVVLLGTFAVMAACGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +    + +  S   +      +     I  + + + +   + FF
Sbjct: 400 LAIGLLVDDAIIVVENVERVMSEEGLSPKEATRKSMGQITGALIGIALVLSAVFVPMAFF 459

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G      R F+IT+  ++L+S+  AI    A+   +           +       +   
Sbjct: 460 SGSTGVIYRQFSITIASAMLLSVVVAIVFTPALCATMLKPIDPAHHAAKRGFFGWFNRCF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                      A    R     +   +L    +             + +G   L V    
Sbjct: 520 EKLTAGYSTTTAACIRRWGRTMIIFLVLTGGMAWFFHRIPTAFLPEEDQGMALLVVTLPP 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                   S LE +   DI           +            Q   L  +K +      
Sbjct: 580 GSTQEETLSVLERI--EDIVLNTEKEAVQEMFTAAGFSFGGRGQNTALGFIKFRDWSERK 637

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +++   + G  + +  + KG +   ++  A++
Sbjct: 638 DKSLKVHAVAGRIMGKLQVIKGAMAFAVTPPAIM 671



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +   ++ +      + L        +++   R++ +   +++   
Sbjct: 258 SQVRLGDVARLELGGESYTVTPRLNGKPASGLGVKLASGANALETARLVHLKIDELSRFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I + +  +I + + + I +++  +     L     + + + 
Sbjct: 318 PEGLKVVYPWDTSPFVRLSIEEVVKTLIEAVVLVFIVMFLFLQNIRATLIPTLAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A  G   N   +  ++  IG  V+D ++V + +     +    +S ++   KS+
Sbjct: 378 GTFAVMAACGFTINTLTMFGMVLAIGLLVDDAIIVVENV--ERVMSEEGLSPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  +  ++      +PMA + GS       F+I +A  ++++   +I     +
Sbjct: 436 GQITGALIGIALVLSAVFVPMAFFSGSTGVIYRQFSITIASAMLLSVVVAIVFTPAL 492



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 68/206 (33%), Gaps = 8/206 (3%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY 683
             G     T     +         L    +    G      L       +  IS + + + 
Sbjct: 828  EGQPAPGTSSGTAMATMEAIADKLPRGIDRSWAGLSYEERLSGSQAPALYAISLLVVFLC 887

Query: 684  IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +   ++ W      +  + + +   +    + G+  ++     +LT +G S  + +++ +
Sbjct: 888  LAALYESWTVPFAVMLIVPMGVLGAVLAVMIRGLPNDVYFQVGLLTTVGLSAKNAILIVE 947

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
              ++    Y   +   +    +    L   + TS+A    VLP+A+    G     +   
Sbjct: 948  FAKE---GYDKGMGLVEATVHAARLRLRPILMTSLAFGFGVLPLAIANGAGSGSQNAIGT 1004

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYD 825
             +  G+V     +I +     +FI  
Sbjct: 1005 SVLGGVVGGTLLAIILVPVFFVFITR 1030


>gi|224539976|ref|ZP_03680515.1| hypothetical protein BACCELL_04888 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518402|gb|EEF87507.1| hypothetical protein BACCELL_04888 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1060

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 77/690 (11%), Positives = 178/690 (25%), Gaps = 36/690 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LGILPIAQYPDITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAQTVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L        +    +    ++      +      +  S        DQ+   
Sbjct: 111 RVSVAQASLPTPVVVQGVTVQKQSSNIVMFLTMTSENKEYDGLYLSNYATLNLADQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF---LR 234
                          +    DP+ LR    + A +       N        G        
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPAALRIRNLSAADVYQAIQSQNVEVSAGTVGQPLPGNPA 230

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             + N   V           +           +    I   E G R        +I    
Sbjct: 231 PDNTNIGNVSSGNNAPAYQYSLTVKGRLSSPEEFGNIILRTETGGRVLRLRDVAHIDLGS 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A       L            +   +     +        L           V       
Sbjct: 291 ASYSVVSRLNGQPTAAIAIYQQPGSNSLDVSKGVKEKMQKLSKSFPSGIHYSVTLDTTDV 350

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S      T      LV++V+F+ +   +  ++   +I +++I TLA+++L G ++  
Sbjct: 351 IHASVDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMALFGFSINT 410

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITA 470
            ++ G++L + + VD  I+V E           S   ++          I       +  
Sbjct: 411 LTLFGLILAVAIVVDDAIVVVENSTRLLDTGQYSARQAVIQAMGEITGPIVGVVLVLLAV 470

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSID 524
            I T+++    G   + FA+T+  S ++S F ++++  A+   I       +    +  +
Sbjct: 471 FIPTMLVSGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALILQPTKPAQPPLFRGFN 530

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                   +    +     R     +  +   ++  I  +         +  G     V 
Sbjct: 531 FVYNKTQGIYDKTVGWLLRRPAAALLSYAGFTALAVILFMKWPSTFIPEEDDGYFLAVVQ 590

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 L    +    +     S+                 G+         ++K     
Sbjct: 591 LPPASSLERTEAVGREINEILNSYPEVKNYIGISGFSVMGGGEQSNSGTYFVILKNWDER 650

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                T Q+        +  +    +  ++
Sbjct: 651 KGKEHTAQSVVNRFNAQAYGIQEAEVFAMV 680



 Score = 41.2 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 39/132 (29%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L S     +S  N        +  Q           V E ++K             T  
Sbjct: 287 DLGSASYSVVSRLNGQPTAAIAIYQQPGSNSLDVSKGVKEKMQKLSKSFPSGIHYSVTLD 346

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +    +  +  + + +L+       W   +    T+ + +  TL   ALFG 
Sbjct: 347 TTDVIHASVDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMALFGF 406

Query: 717 EFNLTAVAAVLT 728
             N   +  ++ 
Sbjct: 407 SINTLTLFGLIL 418


>gi|171315747|ref|ZP_02904980.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MEX-5]
 gi|171099159|gb|EDT43935.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MEX-5]
          Length = 1048

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 70/538 (13%), Positives = 153/538 (28%), Gaps = 30/538 (5%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           MI  +G +IA+        +  +P  +P + I                     +   +  
Sbjct: 1   MIILLGGVIAMF----LLPISEYPEVVPPSVI---------VKAQYPGANPKVIAETVAS 47

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             +E  + ++             N  IT++F      +     V   +     +L  D +
Sbjct: 48  PLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQALPRLPEDVQ 107

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  + T        ++                   +    D++   +   Q         
Sbjct: 108 RLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVGQVQLWGSGDY 167

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
            +    DP ++ Q   +   +       N      + G          Q  V  +  +  
Sbjct: 168 AMRVWLDPQKVAQRGLSAEDVVQSIREQNVQVAAGVIGASPSLPGTPLQLSVNARGRLQT 227

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
                          +    +                 I    +      +L        
Sbjct: 228 ED-------------EFGDIVVKTTPDGGVTHLRDIARIELDASEYGLRALLDNKPAVAM 274

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
             +     +     +      A L+          +          S      T      
Sbjct: 275 AINQSPGANSLQISDEVRKTMAELKQDMPAGIDYKIVYDPTQFVRSSIKAVVHTLLEAIA 334

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           LV+IV+ + +   +  L+   ++ +++I T +LL   G ++   S+ G+VL IG+ VD  
Sbjct: 335 LVVIVVIVFLQTWRASLIPLIAVPVSIIGTFSLLLAFGYSINALSLFGMVLAIGIVVDDA 394

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGF 488
           I+V E +        +   +           I    +T +   V L F     G   + F
Sbjct: 395 IVVVENVERNIESGMNARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQF 454

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
           A+T+ +S +IS F ++++  A+   +++    K   +  +    L         +  R
Sbjct: 455 AMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFRGFNKVFHR 512



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 884  SLTLPLAVILIVPMSILSALTGVWLTQGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 941

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+      G  +  +  + + FG+
Sbjct: 942  -LEHDGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHAMGVAVFFGM 1000

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1001 LGVTLFGLMLTPVFYVVLR 1019



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 90/254 (35%), Gaps = 14/254 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 234 IVVKTTPDGGVTHLRDIARIELDASEYGLRALLDNKPAVAMAINQSPGANSLQISDEVRK 293

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  +L 
Sbjct: 294 TMAELKQDMP-AGIDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASLI 352

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+    + +
Sbjct: 353 PLIAVPVSIIGTFSLLLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ESGM 409

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASS 811
           + R    K++ E  G  +       ++V     +     G     FA+ +A   V++A +
Sbjct: 410 NARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFN 468

Query: 812 SIFIAAPILLFIYD 825
           S+ ++  +   +  
Sbjct: 469 SLTLSPALSAILLK 482


>gi|109946905|ref|YP_664133.1| preprotein translocase subunit SecF [Helicobacter acinonychis str.
           Sheeba]
 gi|109714126|emb|CAJ99134.1| protein-export membrane protein SecF [Helicobacter acinonychis str.
           Sheeba]
          Length = 323

 Score =  184 bits (466), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 95/294 (32%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +G  +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGAILSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYPQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR+  E          +  G K  ++     P    AQ   L  +   I +      
Sbjct: 61  IKEVRALFEKETRFKGVQVSEFGSKEEILI--KFPFVETAQNEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   S +    ID++I+ TL 
Sbjct: 179 VILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKSKNAAQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|332674351|gb|AEE71168.1| protein-export membrane protein SecF [Helicobacter pylori 83]
          Length = 323

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVVVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEMLI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|189465645|ref|ZP_03014430.1| hypothetical protein BACINT_02005 [Bacteroides intestinalis DSM
           17393]
 gi|189437919|gb|EDV06904.1| hypothetical protein BACINT_02005 [Bacteroides intestinalis DSM
           17393]
          Length = 1060

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 78/690 (11%), Positives = 181/690 (26%), Gaps = 36/690 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLIT-----LGILPIAQYPDITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAQTVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L        +    +    ++      +      +  S        DQ+   
Sbjct: 111 RVSVAQASLPTPVVVQGVTVQKQSSNIVMFLTMTSENKEYDGLYLSNYATLNLTDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-- 235
                          +    DP+ LR    + A +       N        G   L +  
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPAALRIRNLSAADVYQAIQSQNVEVSAGAVGQPLLGNPT 230

Query: 236 -SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             + N   V           +           +    I   E G R        +I    
Sbjct: 231 PGNTNIGNVSSDSNAPAYQYSLTVKGRLSSPEEFGNIILRTEAGGRVLRLRDVAHIDLGS 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A       L            +   +     +        L           V       
Sbjct: 291 ASYSVVSRLNGQPTAAIAIYQQPGSNSLDVSKGVKEKMQELSESFPSGIHYSVTLDTTDV 350

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S      T      LV++V+F+ +   +  ++   +I +++I TLA+++L G ++  
Sbjct: 351 IHASVDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMALFGFSINT 410

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITA 470
            ++ G++L + + VD  I+V E           S   ++          I       +  
Sbjct: 411 LTLFGLILAVAIVVDDAIVVVENSTRLLDTGQYSARQAVIQAMGEITGPIVGVVLVLLAV 470

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSID 524
            I T+++    G   + FA+T+  S ++S F ++++  A+   I++          +  +
Sbjct: 471 FIPTMLVSGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALILQPTKPAQSPLFRGFN 530

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                   +    +     R     +  +   ++  I  +         +  G     V 
Sbjct: 531 FVYDKTQGIYDKTVGWLLRRPAAALLSYAGFTALAVILFMKWPSTFIPEEDDGYFLAVVQ 590

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 L    +    +     S+                 G+         ++K     
Sbjct: 591 LPPASSLERTEAVGREINEILNSYPEVKNYIGISGFSVMGGGEQSNSGTYFVILKNWDER 650

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                T Q+        +  +    +  ++
Sbjct: 651 KGKEHTAQSVVNRFNTQAYGIQEAEVFAMV 680



 Score = 41.2 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 39/132 (29%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L S     +S  N        +  Q           V E +++             T  
Sbjct: 287 DLGSASYSVVSRLNGQPTAAIAIYQQPGSNSLDVSKGVKEKMQELSESFPSGIHYSVTLD 346

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +    +  +  + + +L+       W   +    T+ + +  TL   ALFG 
Sbjct: 347 TTDVIHASVDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMALFGF 406

Query: 717 EFNLTAVAAVLT 728
             N   +  ++ 
Sbjct: 407 SINTLTLFGLIL 418


>gi|86750414|ref|YP_486910.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           HaA2]
 gi|86573442|gb|ABD07999.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           HaA2]
          Length = 1078

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 71/692 (10%), Positives = 181/692 (26%), Gaps = 47/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L ++I   GLL      LP   +  +P   P   +                  
Sbjct: 10  RPIFAGVLSALIFLAGLLS-----LPVLPISEYPEVAPPTIV---------VTANYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                + ++F      +     V   +  
Sbjct: 56  PKVIAETVSTPIEEQINGVENMLYMSSQATTDGRMTLNVTFRLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T        ++                   +    D++   E   
Sbjct: 116 AEPRLPAEVRALGVTTIKSAPDLTMVVHLMSPNDRYDMTYLRNYAVLNVKDRLARIEGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   + + +       N        G    +     Q 
Sbjct: 176 QVQLFGSGDYSMRVWLDPQKVAERGLSPSDVVAEIRAQNVQAAAGQVGSSPSQPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I  +              I    A      
Sbjct: 236 SINAQGRLQTEE-------------EFGDIIVKNGDNGEVVRLRDVARIELGAADYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 283 LLNNKSAVAIPIFQSPGSNAIQISDNVRATMKELQQNMPDGVAYDIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++VI T A++ + G ++   ++ G+V
Sbjct: 343 VIHTLLEAIALVVLVVILFLQTWRASIIPLIAVPVSVIGTFAVMHVFGFSINALTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  +   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIERGLTPKDAAYQAMREVTGPIIAIALVLVAVFVPLAFIT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRA--------------MMIFIIRYKKMKSID 524
              G   + FA+T+ +S +IS F ++++  A              ++   +         
Sbjct: 463 GLTGQFYKQFALTVAISTVISAFNSLTLSPALAALLLKGHDAPKDVLTRFMDRTLGWFFV 522

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                                    +G+++   +  +     H +  G       Q  V 
Sbjct: 523 RFNRFFARSSEAYGGGVRRVISRRAIGMAVYLLLVGVTGYLFHAVPGGFVPGQDKQYLVG 582

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +  D + +    E ++      Q   G +N +             +    +       
Sbjct: 583 FAQLPDGATLDRTEEVIRRMGEIAQQEPGVENSIQFPGLSINGFTNSSNSGIVFIGLKDF 642

Query: 645 IVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
                   +   +   ++++   I+   + + 
Sbjct: 643 ADRKDKSLSGNAIALSLNKKFAGIQDAFIAMF 674



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 79/232 (34%), Gaps = 17/232 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L +     I      G     +    +      Q  + + V   I 
Sbjct: 270 RIELGAADYALRSLLNNKSAVAIPIFQSPGSNAIQISDNVRATMKELQQNMPDGVAYDIV 329

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   +    +V ++               W  ++  +  + + 
Sbjct: 330 YDPTQFVRASIEAVIHTLLEAIALVVLVVILFLQT-----------WRASIIPLIAVPVS 378

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T     +FG   N   +  ++  IG  V+D +VV + + +N+      ++ +D   +
Sbjct: 379 VIGTFAVMHVFGFSINALTLFGLVLAIGIVVDDAIVVVENVERNI---ERGLTPKDAAYQ 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           ++ E  G  +  ++      +P+A      G     FA+ +A   V++A +S
Sbjct: 436 AMREVTGPIIAIALVLVAVFVPLAFITGLTGQFYKQFALTVAISTVISAFNS 487



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    +   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLSIIMIVPMGLLAAMFGVWISKGDNNVFTQIGLIVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TSMA  + V+P+      G  +  +  + +  G+
Sbjct: 960  -LEFAGRTPVRAAIEASRLRLRPILMTSMAFIMGVVPLVTSSGAGSEMRHAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +   +  IF      + + 
Sbjct: 1019 IGVTAFGIFFTPMFYVALR 1037


>gi|328675962|gb|AEB28637.1| Protein-export membrane protein SecD [Francisella cf. novicida
           3523]
          Length = 645

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 282/542 (52%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D    ++  L      + +
Sbjct: 107 YIIAMNMLSNSP--NWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILN 164

Query: 80  FLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
               +GI + S  +                  ++++ A+S   + +   ++         
Sbjct: 165 AANDKGINISSSTKAEEKSAIKAPQNYLDNGFVSITLANSADVDKLKQYLSTDFTRTQ-- 222

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ T+    + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 223 -----DPNIIYTSKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G      
Sbjct: 278 DNRVVIEIPGLQDATQAKQILGGTSTASFYLVSPVADRLAAEEQGYKVYALDNGRGYQSY 337

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 338 YSLKGAAVAGGADIIGASPSVDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 397

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 398 TTYEKVKDKDGKESNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 457

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E+ +G  LG D+I KG  +IV  LV +V+F++V Y  +G++A+ ++ +N+IL 
Sbjct: 458 VPVHIVQEQQIGPSLGKDNIEKGMLSIVIALVAVVIFILVYYRVFGVIANIALVMNLILI 517

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 518 VAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 577

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 578 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKK 637

Query: 521 KS 522
             
Sbjct: 638 LE 639



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIEKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + +A++I+I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALVAVVIFILVYYRV-FGVIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 45.1 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 31/294 (10%), Positives = 83/294 (28%), Gaps = 43/294 (14%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  ++  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIVLALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVT--- 116
           + D            + S L K+ I     +M   ++ I ++F D + +      +    
Sbjct: 46  QKDA--DVTTQLLVSIESTLAKDKISYQKANMADDKSNIAITFKDVQEQLKAKQALKDSL 103

Query: 117 --------LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168
                     L    + L+      + +    +    ++ + +    I   ++ S+ II 
Sbjct: 104 GNDYIIAMNMLSNSPNWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIIL 163

Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS---FHKVLPNNSKKG 225
              +  GI+ S+  +      +       D   +   L  +A +     +        + 
Sbjct: 164 NAANDKGINISSSTKAEEKSAIKAPQNYLDNGFVSITLANSADVDKLKQYLSTDFTRTQD 223

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
                    ++    Y     +++    ++        + +   V  +      
Sbjct: 224 PNIIYTSKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAG 277


>gi|305432922|ref|ZP_07402080.1| RND efflux system, inner membrane protein CmeB [Campylobacter coli
           JV20]
 gi|304444076|gb|EFM36731.1| RND efflux system, inner membrane protein CmeB [Campylobacter coli
           JV20]
          Length = 1040

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 75/654 (11%), Positives = 183/654 (27%), Gaps = 38/654 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLVNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +        +T+ F      +     V   +  
Sbjct: 55  AQTIATTVANPIEDAINGADNMIYMDSTSSSSGTMNLTVYFNIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+  + KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDEVKKLGVTVRKTSSTTLAAISMYSSNGSMSAVDVYNYITLNILDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGATATDVIAAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QSPSEFENIILRTNEDGSFLRLKDVADVEIGSQQYKSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T +        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKSFPEGLEYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L LLG ++ L ++  ++
Sbjct: 342 VIKTFVEALILVIIVMYMFLKNFRSTLIPMIAVPVSLLGTFAGLYLLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +++       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHEDEKISVKDAAIQAMQEVSSPVISIVLVLCAVFIPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSRFF 532
             G  G   + FA+T+ +S+ IS F A+++  ++    +R  + K        N    + 
Sbjct: 462 ISGFVGEIQKQFALTLAISVTISGFVALTLTPSLCALFLRRNESKPFYIVQKFNDFFDWS 521

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                  + +M  R     +     + +I  L+       +  +    + +        S
Sbjct: 522 TSIFSAGVAYMLKRTIRFVLIFCIMLGAIFYLYKQVPGSLVPEEDQGLM-IGIVNLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            +   +  +          +G K+ +  + +    S  +     M         
Sbjct: 581 ALHRTISEVDSMSQEILKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLEDWKD 634



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 91/246 (36%), Gaps = 13/246 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++   +++E   +++++  P     
Sbjct: 266 DVADVEIGSQQYKSQGRLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKSFPEGLEY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ I   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVIKTFVEALILVIIVMYMFLKNFRSTLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YLLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHEDEK-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + +       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFIPVSFISGFVGEIQKQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRAKN 830
                 
Sbjct: 501 RRNESK 506



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 85/255 (33%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ ++ +++  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNIFPAAQIQGQPAPGYTSGQAIEAISQVAQETLSDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +               G     +  + + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TGSYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       D   ++ 
Sbjct: 906  GSFLLVYLRGFTNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKKIFDAAIEAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   V TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIVMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 67/542 (12%), Positives = 151/542 (27%), Gaps = 47/542 (8%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGL-DLRGGSHLVLE 59
            M       +L   I    +           + +          + +G+ +L   S L   
Sbjct: 532  MLKRTIRFVLIFCIMLGAIFYLYKQVPGSLVPEE------DQGLMIGIVNLPSASALHRT 585

Query: 60   VDEDDFVNGFL--QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
            + E D ++  +       +  + +    +   S+++    + +   D + +   AD++  
Sbjct: 586  ISEVDSMSQEILKTNGVKDAMAMI-GFDLFTSSLKENAAAMFIGLEDWKDRNVSADEI-- 642

Query: 118  FLQGVNSKLNVDPKKNLLVTTTEKEISIVLS---QNNIDQVISHAIEQSMEIIRQRIDQI 174
             +  +N K   D     +         + ++   +  +      + +Q  E + + +   
Sbjct: 643  -IMELNKKFAPDRNAASVFRGLPPIPGLSITGGFEMYVQNKSGKSYDQIQEDVNKLVAAA 701

Query: 175  GISESTIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
               E       +      Q     D  +L+        +                     
Sbjct: 702  NQREELYGVRTTLDTSFPQYKLIIDRDKLKHFNLNMQDVFSTMNATIG------------ 749

Query: 234  RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                   Y V D   +         A  D    +  +   F      +   +      + 
Sbjct: 750  ------TYYVNDFTMLGKNFQVNIRAKGDFINTQNALKNIFVRSNDGKMIPLDSFLTLQR 803

Query: 294  LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +   D +        Q         +    IE    +A    +    I  +    + V 
Sbjct: 804  SSGPDDVKRFNIFPAAQIQGQPAPGYTSGQAIEAISQVAQETLSDDYSIAWSGSAYQEVS 863

Query: 354  ADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGAT 411
                  S   G+ A   G+V + L +   Y      L    ++   V  +  L+ L G T
Sbjct: 864  ------SKGTGSYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLRGFT 917

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNIT 469
              +    G++L IGL+  + IL+ E   EE  K        +++    R    +  S   
Sbjct: 918  NDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKKIFDAAIEAAKLRFRPIVMTSLAF 977

Query: 470  ALIATVVLFFFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
                  ++F  G G+         +   ++ +   AI  V      +  + +        
Sbjct: 978  TFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEWLDKKRGK 1037

Query: 528  LS 529
            + 
Sbjct: 1038 VH 1039


>gi|283779058|ref|YP_003369813.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pirellula staleyi DSM 6068]
 gi|283437511|gb|ADB15953.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pirellula staleyi DSM 6068]
          Length = 1062

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 69/686 (10%), Positives = 185/686 (26%), Gaps = 40/686 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +   IG +        +  ++++P   P               + +     
Sbjct: 10  PVFANVIAILTMVIGGVALW-----RLPVEQYPEITPPT-------------VRVTCVYP 51

Query: 64  DFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                 +       +   +        +   S       +T++F      ++    V   
Sbjct: 52  GADAQVVASTVAAPIEQQVNGVENMLYMSSTSSSDGSYSLTVTFEIGTNLDDAQVLVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +    + L  + K+  L    +    +++     D+    ++  +     +  D++   +
Sbjct: 112 VSSAEALLPEEVKRQGLTVKKQSAALLLVITLASDKPELDSLFLANYATLRIRDELSRVK 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +LR    T   +       N        G   +   + 
Sbjct: 172 GVGEVTVFGTGNYSMRLWLDPDQLRARGLTVQDVQAAVAEQNVQVAAGQVGQPPVVAENA 231

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             +               +T     +  +    +       R  +      +        
Sbjct: 232 LAF-----------QYTVSTLGRLNRPEQFENIVVKTGEDGRLTYLKDVARVELGAQSYD 280

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              +                 +              L           +          S
Sbjct: 281 QFNLKQGAPTANIGIFQLPGANALEVTTEVEHAMERLAKSFPQGVSYTMPLNTTKFVEAS 340

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LVLIV+ + +   +  L+   ++ + +I   A ++ LG ++ + ++ 
Sbjct: 341 IHEVYKTLLEAGVLVLIVILVFLQDWRAVLIPATTVPVTLIGAFAAMAWLGFSVNMLTLF 400

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV-- 476
           G+VL IG+ VD  I++ E       K +    +           I    +  L   +   
Sbjct: 401 GLVLAIGIVVDDAIVIVENAAHHIEKGEKPKQATIRAMDEVLGPIIGITLVLLAVFIPSA 460

Query: 477 -LFFFGGGAVRGFAITMGLSILISMFTAISIVRA-MMIFIIRYKKMKSIDINPLSRFFLI 534
            +    G   R FA+T+  + +IS   A+++  A   +++      K+I     +  +  
Sbjct: 461 AMSGITGQLYRQFALTIAATAVISAINAVTLKPAQCALWLRPPTGKKNIFFRGFNYVYGH 520

Query: 535 PDCIAIQFMR--ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            + + I  +    R   + +    ++  +   +   +  G           +A +  D +
Sbjct: 521 CENVYIWIVGGLLRQMALVVVAFVALVLLTGWWYTRVPTGFLPTEDQGYLFVAVQLPDAA 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                   ++  D    +  G  +++        D+   +    +          L    
Sbjct: 581 SQERTKSVMRQIDDKLASIPGVADWISIGGLSLLDNSTASNAGTLFVTLDNWEERLQHEG 640

Query: 653 NTEIVGPKISRELIRKGIVGVIISAI 678
            +      +      +    VI    
Sbjct: 641 QSLNEIMGMMGAKFAEIDEAVIFPFA 666



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/211 (11%), Positives = 74/211 (35%), Gaps = 11/211 (5%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                  S    ++LE +  +                  ++  E     I   +++ + + 
Sbjct: 829  PAPGFSSGDSLKLLESIADEKLPQSIGFEWTGMSYQEKRVGNE----AIGIFVMAVLLVY 884

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +  +++ W   +  I  + L +   +   ++ G++ NL     ++ +I  +  + +++
Sbjct: 885  LVLAAQYESWITPIAVILVVPLGLLGAIAAVSILGLDNNLYTQIGIVLIIALASKNAILI 944

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +  R+   L     S  +   ++        + TS A  + V+P+ +    G +   + 
Sbjct: 945  VEFARE---LRHQGKSIVEASVEAARMRFRPILMTSFAFILGVVPLVIAEGAGAAGQRAL 1001

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               +  G++ +   S+F      +       
Sbjct: 1002 GTAVFGGMIASTVLSVFFVPIFYVLFQGLSE 1032



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 89/261 (34%), Gaps = 9/261 (3%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N    F+  +       R   L  V       Q  D            +   Q    +++
Sbjct: 245 NRPEQFENIVVKTGEDGRLTYLKDVARVELGAQSYDQFNLKQGAPTANIGIFQLPGANAL 304

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688
             T  +E   +++ +  P        +   K     I +    ++ + + +LI I +   
Sbjct: 305 EVTTEVEHAMERLAKSFPQGVSYTMPLNTTKFVEASIHEVYKTLLEAGVLVLIVILVFLQ 364

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + +       A  G   N+  +  ++  IG  V+D +V+     +N 
Sbjct: 365 DWRAVLIPATTVPVTLIGAFAAMAWLGFSVNMLTLFGLVLAIGIVVDDAIVIV----ENA 420

Query: 749 KLY-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
             +       +    ++++E LG  +  ++      +P A      G +   FA+ +A  
Sbjct: 421 AHHIEKGEKPKQATIRAMDEVLGPIIGITLVLLAVFIPSAAMSGITGQLYRQFALTIAAT 480

Query: 805 IVVAASSSIFIAAPILLFIYD 825
            V++A +++ +          
Sbjct: 481 AVISAINAVTLKPAQCALWLR 501


>gi|167584837|ref|ZP_02377225.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Burkholderia ubonensis Bu]
          Length = 664

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 67/538 (12%), Positives = 150/538 (27%), Gaps = 31/538 (5%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           +I   G++           +  +P  +P + I                     +   +  
Sbjct: 2   VILLAGVIAMF-----LLPISEYPEVVPPSVI---------VKAQYPGANPKVIAETVAS 47

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             +E  + ++             N  IT++F      +     V   +     +L  D +
Sbjct: 48  PLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQALPRLPEDVQ 107

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  + T        ++                   +    D++   +   Q         
Sbjct: 108 RLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVGQVQLWGSGDY 167

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
            +    DP ++ Q       +       N      + G          Q  V  +  +  
Sbjct: 168 AMRVWLDPQKVAQRGLAAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQLSVNARGRLQT 227

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
                          +    +                 IG   +      +L        
Sbjct: 228 EE-------------EFGDIVVKTTPDGGVTHLRDIARIGLDASEYGLRSLLDNKPAVAM 274

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
             +     +     +      A L+          +          S      T      
Sbjct: 275 AINQSPGANSLQISDEVRKTMAELKQDMPAGVDYRIVYDPTQFVRSSIKAVVHTLLEAIA 334

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+VL IG+ VD  
Sbjct: 335 LVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLGFGYSINALSLFGMVLAIGIVVDDA 394

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGF 488
           I+V E +        S   +           I    +T +   V L F     G   + F
Sbjct: 395 IVVVENVERNIESGMSARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQF 454

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
           A+T+ +S +IS F ++++  A+   +++    K   +  +    L         +  R
Sbjct: 455 AMTIAISTVISAFNSLTLSPALSAILLKGHGDKEDWLTRVMNRVLGGFFKRFNKVFHR 512



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 90/253 (35%), Gaps = 12/253 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 234 IVVKTTPDGGVTHLRDIARIGLDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 293

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 294 TMAELKQDMP-AGVDYRIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 352

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+    + +
Sbjct: 353 PLIAVPVSIVGTFSLLLGFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ESGM 409

Query: 756 SFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIVVAASSS 812
           S R    K++ E  G  +  ++   A    L       G     FA+ +A   V++A +S
Sbjct: 410 SARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNS 469

Query: 813 IFIAAPILLFIYD 825
           + ++  +   +  
Sbjct: 470 LTLSPALSAILLK 482


>gi|192360465|ref|YP_001982830.1| RND transporter, Hydrophobe/Amphiphile Efflux family [Cellvibrio
           japonicus Ueda107]
 gi|190686630|gb|ACE84308.1| RND transporter, Hydrophobe/Amphiphile Efflux family [Cellvibrio
           japonicus Ueda107]
          Length = 1038

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 70/641 (10%), Positives = 174/641 (27%), Gaps = 44/641 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVLSMLLIAFGLVA-----FERLTLREYPNIDPPVV---------SIRTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S ++       S     + I + F      +  A+ +   +  
Sbjct: 55  AANIVETRITKVLEDRISGVEGIRFIESSSENGISNIVVQFDTGHDMDAAANDIRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +   +  E  I+      + +     E +    R  ID+  + +   
Sbjct: 115 ALGNLPDEADPPEVQKVSSDEDVIIWFNFAGENMTM--PELTDYAQRYLIDRFSVIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D   L     T   +       N             + +     
Sbjct: 173 RVRIGGEQRYAMRVWLDRRELAARDLTVNDVEMALRAENVELPAGSIESLERQFTVR--- 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A       +    +                 + K         
Sbjct: 230 ----------------MARSYRTVDQFNQLVIKRGNDGYLVRLGDVARVEKGTEEDRTLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +              + A             +      +   
Sbjct: 274 RGNGVTQVGIGIVKQSTANTIDVARGVKAERDKINAILPEGMALRDSYDSSVFVERAIHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T +I   LV+IV+++ +   +  LV   ++ +++I T  +L+++G ++ + ++  +V
Sbjct: 334 VYLTLSIALVLVVIVIYLFLGSVRATLVPAVAVPVSIIATFTVLAVMGFSVNMLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E I     +  +    +   G       +  + +  +   V + F 
Sbjct: 394 LAIGLVVDDAIVVLENIVRHMEEKAKPSLLAAYDGVKEVGFAVIATTLVLIAIFVPIVFL 453

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFF 532
            G   R    FAITM  ++  S   A+++   M   +++    K      I+    +   
Sbjct: 454 KGDIGRLFSEFAITMAAAVGFSSLVALTLSPMMASKVLKSHDTKNPVVEKINEGMQALRV 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                I           +    +  +  + +          + +G   + V        +
Sbjct: 514 RYKKTIRWCLTHKTPMVIVFVAMVGVMFLLMRVIPSEYAPREDRGTFFVMVNGPEGASYA 573

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            +   +  ++   + + +       +VR     G   +   
Sbjct: 574 YMEDYMAEIEKRMMRYVDSGEVTRLMVRAPRSFGAIESFNS 614



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 83/233 (35%), Gaps = 6/233 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V    +  +     F+     +  +  ++    +++   R ++  + KI  I+P 
Sbjct: 254 VRLGDVARVEKGTEEDRTLFRGNGVTQVGIGIVKQSTANTIDVARGVKAERDKINAILPE 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                            I +  + + I+ + ++I I          L     + + I  T
Sbjct: 314 GMALRDSYDSSVFVERAIHEVYLTLSIALVLVVIVIYLFLGSVRATLVPAVAVPVSIIAT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A+ G   N+  + A++  IG  V+D +VV + +     +   +          + E
Sbjct: 374 FTVLAVMGFSVNMLTLLALVLAIGLVVDDAIVVLENI--VRHMEEKAKPSLLAAYDGVKE 431

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
                + T++      +P+    G +      FAI MA  +  ++  ++ ++ 
Sbjct: 432 VGFAVIATTLVLIAIFVPIVFLKGDIGRLFSEFAITMAAAVGFSSLVALTLSP 484



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 81/210 (38%), Gaps = 6/210 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + ++    D++  +  L+ +   + E +P + + + + +             + V+   +
Sbjct: 808  LTIEANLADNLTLSEALDHLNGLVREHLPSTVVVDYKGLSRDYQTASGSIMFIFVLGILV 867

Query: 679  AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
              L+       +   L  + T+ L I   +    + G  FNL +   ++ LIG +  + +
Sbjct: 868  TFLVLAAQFESYVHPLVIMLTVPLAILGGMIGLYVTGSTFNLYSQIGLIMLIGMAAKNGI 927

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ +      +L    + F + +  + +  L   + TS+ A    +P+ +    G     
Sbjct: 928  LIVEFAN---QLRDRGMEFTEALLDASSARLRPILMTSLTAVAGAIPLVISSGAGAETRF 984

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               I + FGI++A   ++F        +  
Sbjct: 985  VIGIVVIFGILLATFLTLFFVPVAYSLLAR 1014


>gi|157165791|gb|ABV24995.1| EefB [Klebsiella pneumoniae]
          Length = 675

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 75/687 (10%), Positives = 187/687 (27%), Gaps = 47/687 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P               + +   
Sbjct: 8   RRPVFAWVIAILIMLAGVLAI-----RTLPVGQYPDVAPPA-------------VKISAT 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   L+      +   L            S       IT++F      +    +V 
Sbjct: 50  YTGASAETLENSVTQVIEQQLTGLDHLLYFSSTSSSDGSVSITVTFEQGTDPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   S+L  + +++ +     +   +++         + + + S  ++    D +  
Sbjct: 110 NKVQQAESRLPSEVQQSGVTVEKSQSSFLLILAVYDKTNRATSPDISDWLVSNMQDPLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    DP++L       + +       N        G     ++
Sbjct: 170 VEGVGSLQVFGA-EYAMRVWMDPTKLASYSLMPSDVQSAIEAQNVQVSAGKIGALPSSNA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  +  +                 +    I   +             +      
Sbjct: 229 QQLTATVRAQSRL-------------QTPDQFKAIIVKSQADGSVVRLSDVARVEMGSED 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +   T        A  +            + +     
Sbjct: 276 YTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQGYDIAYPKDSTEFIK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   +
Sbjct: 336 ISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGTFGVLALFGYSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +    R        + +         +    +      +
Sbjct: 396 LFAMVLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F++T+  ++++S+  A+++  A+   ++ + K  +          
Sbjct: 456 PMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALLSHSKPHTKGFFGAFNRL 515

Query: 533 LIPDCIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                   Q        R   +  +      ++ L         +  +   ++ V    P
Sbjct: 516 WGRTEAGYQRRVLGGLRRGAVMMGAYALICGAMALAMWKLPGSFLPVEDQGEIMVQYTLP 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR--VLEMVKKKITEIV 646
              + VR+     Q+ D          + +  +         Q        +K       
Sbjct: 576 AGATAVRTAEVRRQVTDWFLTKEKANTDVIFTVDGFSFSGSGQNAGMAFVSLKNWSQRKG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
             +T Q   +   K    +    +  +
Sbjct: 636 DDNTAQAIALRATKELGTIRDATLFAM 662



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +    +          +  +     +++    +++    +    +P 
Sbjct: 261 VRLSDVARVEMGSEDYTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + I ++  +++  + +   L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LPMA +GGS       F++ +   ++++   ++ +   +   + 
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALL 498

Query: 825 DWRAKNAR 832
                + +
Sbjct: 499 SHSKPHTK 506


>gi|325518203|gb|EGC97969.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           sp. TJI49]
          Length = 952

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 66/585 (11%), Positives = 162/585 (27%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  +I  IGL+       P      +P  +P + +                  
Sbjct: 10  RPIFAVVLSIVIFAIGLIAI-----PMLPAGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             + ++ ++F      +  A +V   +  
Sbjct: 56  PKEIAESVAEPLEEAINGVEGIMYMKSVAGSDGSLQVVVTFLPGVDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            ++     +     D++       
Sbjct: 116 ALSRLPDEVRQYGVTTQKQSPTPLMYVSLYSPDNSRDSLYLRNYLTLHVKDELSRLTGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL     T + +       N        G   L  ++    
Sbjct: 176 DVGVYGSGDYAMRLWLDPNRLASRGLTASDVIAAVREQNVQVSAGQLGAEPLPKANDFLV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +  +    +         I           
Sbjct: 236 SINVRGRL-------------RTVQEFGDIVLRNGDDGQVVKLSDVARIELGAGDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L     P                S   
Sbjct: 283 YFNDRHSAVVGIFLSPGANALDVAKAVYAKIDELSKRFPPGVAYRPVWDPTVFVRESIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G+V
Sbjct: 343 VQHTLIEAVVLVVLVVILFLQTWRASVIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  +   +           I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVLENVERNIAQGLTPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS   ++++  A+   ++R        +       F  +  
Sbjct: 463 GVTGQFYKQFAVTIAISTVISAINSLTLSPALAAKLLRPHGAPKDALTRALDRAFGWLFH 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R+     G+          +   +             +
Sbjct: 523 PFNRFFERSSGRYHGVVARTLKRRGAVFAVYAALLAATALLFNAV 567



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  +  L G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASVIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLVLAIGIVVDDAIVVLENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                ++ RD   +++ E  G  V  ++      +PMA   G        FA+ +A   V
Sbjct: 425 Q---GLTPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMSGVTGQFYKQFAVTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAINSLTLSPALAAKLLR 500


>gi|145299883|ref|YP_001142724.1| hydrophobe/amphiphile efflux-1 family protein [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142852655|gb|ABO90976.1| transporter, hydrophobe/amphiphile efflux-1 family [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 1034

 Score =  184 bits (466), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 82/687 (11%), Positives = 185/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL       +    ++++P   P               + +    
Sbjct: 9   RPIFSCVISIIIVLAGLAA-----MRSLPVEQYPQITPPV-------------VSVTAFY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +            S    Q  + + F      +     V  
Sbjct: 51  PGATPEAISQTVAAPLEQQINGVEHMVYMQSGSASNGQMNLNVYFEIGTDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  + KK  +    +    + +               S   +   ID++   
Sbjct: 111 RVSAAMAQLPEEVKKQGVTVKKKSTSILQVITLVSPNQSFDTTYLSNYALLNIIDELKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +     P RL QL  T   +       N        G +      
Sbjct: 171 PGVGDTMLFGGTDYAMRIWLRPDRLAQLQLTPGDVIGAIREQNTQFAAGKIGAQPTSTPI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V+ K  +                 +    I        +        +       
Sbjct: 231 DFTYTVQTKGRL-------------EDVKEFENIIIRSMPNGAKIRVKDIARVELGGKDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +      A L+          +          
Sbjct: 278 DIVARANGKPAIGIATYLQPGANSVAVADAVHATMAQLQTRFPQDIEYQIPYDTTEFVKL 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ +++I T A + LLG ++ L ++
Sbjct: 338 SIEEVVHTLFEAMVLVFVVVYLFLQNFRATLIPCIAVPVSLIGTFAGMLLLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    R+ + S   +  +     +S I  + +      + 
Sbjct: 398 FGMVLTIGIVVDDAIVVLENVERSMRERKLSAPQAAILAMQEVFSPIVATTLVLCAVFIP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM---KSIDINPLSR 530
           + F GG      + FAIT+ +S++IS   A+++  A+   +++       +         
Sbjct: 458 VAFMGGMTGVMYKQFAITIAVSVVISSIIALTLSPALCAVLLKDGHQEPARFFVWFNHRF 517

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L    +       R   +  SI+ ++     L    +   +         + A    D
Sbjct: 518 DQLTRGYVRGVAFLNRRVELAFSIIVTMLLASYLLFMKVPGELVPDEDQGYLISAIMLPD 577

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +          D         K+ +    +    S   +                  
Sbjct: 578 AAALTRTQALADKFDQIAMANPNVKDVVTFSGFDILSSAVISNSGLSFITLKDWSERKDA 637

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISA 677
            Q++  +        +     G + S 
Sbjct: 638 GQDSFSLAHTFQGMSLMGLADGFVASF 664



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 61/147 (41%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     L G   NL  +  ++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPCIAVPVSLIGTFAGMLLLGFSINLLTLFGMVLTIGIVVDDAIVVLENV--ERS 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           +    +S       ++ E     V T++      +P+A  G   G +   FAI +A  +V
Sbjct: 422 MRERKLSAPQAAILAMQEVFSPIVATTLVLCAVFIPVAFMGGMTGVMYKQFAITIAVSVV 481

Query: 807 VAASSSIFIAAPI-LLFIYDWRAKNAR 832
           +++  ++ ++  +  + + D   + AR
Sbjct: 482 ISSIIALTLSPALCAVLLKDGHQEPAR 508



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 60/168 (35%), Gaps = 7/168 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               +      + + + +  ++ +W      IT +   +   L      G+  N+     +
Sbjct: 870  SAGMAFGFGIVMIFLILAAQYERWSLPFAVITAVPFALFGALLATWAVGLTNNVYFQIGL 929

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TL+G +  + +++ +     +  +   +S  +   ++        V TS+A  +  +P+
Sbjct: 930  VTLVGLAAKNAILIVEFA---VMKHEEGMSIAESALEAARLRFRPIVMTSLAFILGCIPL 986

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  G +   +   P+  G++ A   +IF        I     K  
Sbjct: 987  ITSSGAGAASRHALGWPVIGGMLAATFIAIFFIPLFFRLIMQGSQKKR 1034


>gi|169335674|ref|ZP_02862867.1| hypothetical protein ANASTE_02094 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258412|gb|EDS72378.1| hypothetical protein ANASTE_02094 [Anaerofustis stercorihominis DSM
           17244]
          Length = 382

 Score =  184 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 80/300 (26%), Positives = 148/300 (49%), Gaps = 4/300 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             + +   I F +     + I+++  + S+  +   GL++GIDFKGG  + +  N+  ++
Sbjct: 1   MTMNNNFKIDFAKHAKKYLIIALVLIVVSLGSVLFRGLDFGIDFKGGTIITMELNQKFNV 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             V++             + D     ++       DS  ++   +    K    +    +
Sbjct: 61  DDVKAISNKYDSKAEVTTSGDNGTQAVISTSKDLSDSERKSLFND---FKSKYDLKEKDL 117

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            + + V   +  EL    +   II+ I MLIYI  RF++   L AI +LI D+   LG F
Sbjct: 118 LSIDNVSGTVGDELRSMAVKACIIAVICMLIYITFRFEFMQGLCAIFSLIFDMCMVLGVF 177

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           ++F I+ N + +AA+LT++GYS+ND ++ +DR+R+N         +  L++ SIN+T+ R
Sbjct: 178 SIFQIQVNSSFIAAMLTILGYSINDTIITFDRVRENSPKVKRG-DYYSLVNVSINQTMTR 236

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           S+ T++   ++V P+ ++G + I  F  PM  G V    SSI +A P+   I + +    
Sbjct: 237 SINTTLTTLLAVTPLLIFGTTSIKEFVFPMMIGFVSGVFSSICVAVPVWYMIKEKQKLKN 296


>gi|307545716|ref|YP_003898195.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Halomonas
           elongata DSM 2581]
 gi|307217740|emb|CBV43010.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Halomonas elongata DSM 2581]
          Length = 1062

 Score =  184 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 196/688 (28%), Gaps = 44/688 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++  IGL+      +    ++++PS +P                     
Sbjct: 9   KRPIFASVLAIILTLIGLMS-----MRVLPIEQYPSVVPPTV---------SVSATFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           + + V   +     E  + ++       +     +  ++++F      +     V   +Q
Sbjct: 55  DAETVAQTVAAPLAEAINGVENMLYMTSTSADNGSMSLSVAFNIGTDGDINTINVNNRVQ 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           G  S+L    +   +         ++L            +          +D++      
Sbjct: 115 GALSQLPEAVQDQGVTVELRSSSILMLVSLISPDDDYDQVFMQNYATLNILDELRQVPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP +L Q   T ++++      N              D     
Sbjct: 175 GDAEVLGGGEFAMRIWMDPDKLAQYDLTPSEVASAIRAQNTEVPAGSLAATPQSDPRAYT 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +     +S                                       I    +     
Sbjct: 235 YTITAGGRLSNTD-------------DFRDIFLRTNPDGSALRLDDVARIELGASFYGID 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L    +   + + +   +   T      +   L     P    +           S  
Sbjct: 282 AKLNGGTMTPIMINQQPGANALETARGVEKVMDELAGRFPPGLEYVTPYDTTQFIDASVE 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      +V ++LF+ +   ++ ++A   + ++V+ T A     G ++ L ++  +
Sbjct: 342 TVLHTFIEAFLIVGVILFIFLQNWRFTVIAMSVVPVSVLATFAGFYAFGFSINLLTLFAL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           VL IG+ VD  ILV E +     ++   +V  +           +  +++      V + 
Sbjct: 402 VLSIGIVVDDAILVVENVERVLSEDEEITVTQATIRAMKEVGGPVIATSLIMAAVFVPVA 461

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-----------ID 524
           F G   G   + FA+T+ +S+  S   A++   A+    I++   +            + 
Sbjct: 462 FLGGFSGQIYQQFALTIAVSVAFSALMALTFTPALSAIFIKHDLHRKESAFMRAVRTPLR 521

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +       +    + +  +  RFWGV + +   + +            +  +    + + 
Sbjct: 522 LFDRLFAGITAVYMWVVKVLVRFWGVALLLTALVGAGSWWLYQSTPSTLVPETDQGIVLA 581

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           + +  D + +      +     + ++ +G K       Y    S   T    +       
Sbjct: 582 SVQLPDSASLERTKNYMDKLSSAIKDVEGVKFSTAVAGYDMLTSSVNTARGIIFVNMEPW 641

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVG 672
                T         +   ++     + 
Sbjct: 642 GERDLTASELIGKIMQFGAQIPGGSAMA 669



 Score = 88.6 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 91/233 (39%), Gaps = 5/233 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  V           I  +   G    ++  Q    +++   R +E V  ++    P   
Sbjct: 265 LDDVARIELGASFYGIDAKLNGGTMTPIMINQQPGANALETARGVEKVMDELAGRFPPGL 324

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
              T     +     +   +   I + + + + ++I  + W F + A++ + + +  T  
Sbjct: 325 EYVTPYDTTQFIDASVETVLHTFIEAFLIVGVILFIFLQNWRFTVIAMSVVPVSVLATFA 384

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F  FG   NL  + A++  IG  V+D ++V + + + +      I+      +++ E  
Sbjct: 385 GFYAFGFSINLLTLFALVLSIGIVVDDAILVVENV-ERVLSEDEEITVTQATIRAMKEVG 443

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           G  + TS+      +P+A  G   G +   FA+ +A  +  +A  ++     +
Sbjct: 444 GPVIATSLIMAAVFVPVAFLGGFSGQIYQQFALTIAVSVAFSALMALTFTPAL 496



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 68/184 (36%), Gaps = 7/184 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
               ++I +                   +      + +I   + + + +  +++ W   L 
Sbjct: 845  EAMEQIVQDELGDGWGMGWTGTAYQESQAGSAATMAIIFGMLMVFLILAAQYESWSLPLA 904

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             +T         +G  AL G++ ++     +L ++G +  + +++ +     ++      
Sbjct: 905  VLTATPFAFLGGIGGIALRGLDTSVYVQIGMLVVVGLAAKNAILIVE--FAELQRREQGK 962

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIV-VAASS 811
            S R+    + +      V TS+A     LP+A+  G+           +A G+  VA   
Sbjct: 963  SIREAAITAAHLRFRPIVMTSLAFIFGTLPLALATGASDTSSHHIGTTVAVGMASVAILG 1022

Query: 812  SIFI 815
            S+F+
Sbjct: 1023 SLFV 1026


>gi|306818756|ref|ZP_07452478.1| protein-export membrane protein SecF [Mobiluncus mulieris ATCC
           35239]
 gi|307701093|ref|ZP_07638118.1| export membrane protein SecF [Mobiluncus mulieris FB024-16]
 gi|304648442|gb|EFM45745.1| protein-export membrane protein SecF [Mobiluncus mulieris ATCC
           35239]
 gi|307614088|gb|EFN93332.1| export membrane protein SecF [Mobiluncus mulieris FB024-16]
          Length = 370

 Score =  184 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 73/311 (23%), Positives = 133/311 (42%), Gaps = 12/311 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     + Q ++ R   +   ++  + +I  +   G+N  IDFKGG    V  
Sbjct: 4   YAEWGNALYSGKKSYQIIKNRRIFLTTGLVLVLIAIIGVAIFGVNPSIDFKGGTDFTVTN 63

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +         +         + + F    N L     Q           E+ K      
Sbjct: 64  TQNNPPQQPAYDALKAAGVTENPKVFQMGTNGLRVQTSQLATEKETQIQSELAKAYK--- 120

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
                  +   VGP     + R+  +G+++    + + +   F+ W  A+ A+  L+ D+
Sbjct: 121 -VNVKNVSKGSVGPSWGASVSRQAAIGLVVFLAMVSLLLMAYFRTWTMAVSALFALMHDL 179

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLID 762
             T+G FA   +E     +  +LT++GYS+ D VVV+D++R+N K     +  ++ +L +
Sbjct: 180 MITIGAFAFTQVEVTPATIIGLLTILGYSLYDTVVVFDKIRENTKDMMNQSRSTYDELAN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            SIN+T+ RS+ TS+ A + V  +        G S +   ++P+  G++V   SSIFIA 
Sbjct: 240 LSINQTMVRSINTSITAILPVSAILFLGSVLLGASTLRDISMPLFIGMIVGTFSSIFIAT 299

Query: 818 PILLFIYDWRA 828
           P+L  I +   
Sbjct: 300 PLLTIIRNHSQ 310


>gi|295839920|ref|ZP_06826853.1| protein-export membrane protein SecF [Streptomyces sp. SPB74]
 gi|197696749|gb|EDY43682.1| protein-export membrane protein SecF [Streptomyces sp. SPB74]
          Length = 367

 Score =  184 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 145/309 (46%), Gaps = 14/309 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L+   I   F+  R    G+SIL +I +I  L   GL+ GI+F+GG             
Sbjct: 10  RLVRGEIGYDFIGKRKIWYGVSILITITAIVGLAVRGLHMGIEFEGGAVFTTPKTSVSAA 69

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +  +S  ++     I  +  +G     +           + ++ + +  K  +I      
Sbjct: 70  AAEQSAEDASGHDAIVQELGNGGMRVQISGIDTGKSDEIRDKLAQDLDVKADDINAD--- 126

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
               +VGP    ++  K   G+ I  + +++Y+ I F+W  A+ A+  LI DIT T+G +
Sbjct: 127 ----LVGPSWGEQIANKAWTGLGIFMVLVVVYLAIAFEWRMAVAALVALIHDITITVGVY 182

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           AL G E     V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ ++SIN TL
Sbjct: 183 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQSKGITKQTRSTYAEIANQSINGTL 242

Query: 770 GRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ T++ A + V  +   GG      ++   ++ +  G+   A SSIFIA P++  + 
Sbjct: 243 VRSINTTVVALLPVAGLLFIGGGFLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVSDLK 302

Query: 825 DWRAKNARI 833
               +   +
Sbjct: 303 SREPQMKAL 311


>gi|149375651|ref|ZP_01893420.1| AcrB/AcrD/AcrF family protein [Marinobacter algicola DG893]
 gi|149360053|gb|EDM48508.1| AcrB/AcrD/AcrF family protein [Marinobacter algicola DG893]
          Length = 1049

 Score =  184 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 74/516 (14%), Positives = 164/516 (31%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   GL   L        +  +P   P   +S+  D  G         
Sbjct: 9   KRPVFATVLSLLIVVFGLAALL-----GLPVREYPDIDPP-VVSISTDYIG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    +   S ++       S  Q +++ ++ F  SR  +  A+ V   +  
Sbjct: 55  AAEVVDTQITQVVEGAISGIEGIRSIESSTEQGESRTSIEFTISRNVDIAANDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  + +  ++         ++      D     + E S    R   D++ + +   
Sbjct: 115 IADQLPEEAEAPVVQKADSDARPMMWVTLRSDVW--DSAELSDFAERVLADRLSVLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  RL     T A++       N              DS    +
Sbjct: 173 NVRIGGERRYAIRVWLDRERLAARDITVAEVERSLRANNVELPAGSV------DSSTRNF 226

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  ++ +                  D+     G          N+   +   +   
Sbjct: 227 TVRAEGRLTNVEQFR--------------DLVIRRDGNDLLRLGEVANVQMGVESDVSRL 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +     +        +R    P                S   
Sbjct: 273 RANGKTAIGMGIIRQSKANTVAVSDAVRAELEKIRETLPPEVTIAESYDESIFIRASIKE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV++V+F+ +   +  L+   +I + VI     L  LG ++ + ++  ++
Sbjct: 333 VVTTLAIAVSLVILVIFLFLRSWRATLIPAVTIPVAVIGAFIGLGFLGFSINVLTLLAVI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I+    + +    +   G  +    +  + +T +   V + F G
Sbjct: 393 LAIGLVVDDAIVMLENIQRRIDEGEPPLLASYRGAKQVAFAVIATTLTLVAVFVPISFMG 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFI 514
           G   R    F  T+  ++++S   A+++   +    
Sbjct: 453 GNIGRLFAEFGFTLAAAVVVSSLVALTLAPMLCSKW 488



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 67/164 (40%), Gaps = 7/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +S + ++I++++R  W   L    T+ + +          G   N+  + AV+  I
Sbjct: 337 LAIAVSLVILVIFLFLR-SWRATLIPAVTIPVAVIGAFIGLGFLGFSINVLTLLAVILAI 395

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ + +    +             +   +     + T++      +P++  G
Sbjct: 396 GLVVDDAIVMLENI---QRRIDEGEPPLLASYRGAKQVAFAVIATTLTLVAVFVPISFMG 452

Query: 791 GSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           G++      F   +A  +VV++  ++ +A  +         ++A
Sbjct: 453 GNIGRLFAEFGFTLAAAVVVSSLVALTLAPMLCSKWLRHSPESA 496



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 66/164 (40%), Gaps = 7/164 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ + + + +  +F+ W   L  + ++ L +T  L      GI  N+ +   ++ L+G 
Sbjct: 860  GLAFVIVFLVLAAQFESWIHPLIIMLSVPLAVTGALLGLWWAGISLNIYSQIGIIMLLGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ +      +L       +D I +  +      + T+++     +P+ +    
Sbjct: 920  MAKNGILIVEFAN---QLRDKGYEVKDAILEGASLRFRPVLMTTISTVFGAVPLVLATGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G     S  I +  G+V A + ++FI   +   +  +      I
Sbjct: 977  GAESRASIGIVILGGLVFATTLTLFIIPVLYNLLARFAKSTNAI 1020


>gi|167618067|ref|ZP_02386698.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis Bt4]
          Length = 1053

 Score =  184 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 68/568 (11%), Positives = 157/568 (27%), Gaps = 46/568 (8%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           ++  ++   G+            + ++P+  P               + +  +       
Sbjct: 1   MIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANYPGASAK 42

Query: 69  FLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
            ++      +   +        +   S       IT++FA     +    +V   L    
Sbjct: 43  TVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITITFAPGTNPDIAQVQVQNKLSLAT 102

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    ++  L  T      +++   N +    +  + +  +     D I         
Sbjct: 103 PILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRINGVGTV 162

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                    +    DP++L     T   ++      N    G   G          Q  +
Sbjct: 163 TLFGSQ-YAMRIWLDPTKLTNYGLTPVDVTSAISAQNVQIAGGQLGGTPAVPGTVLQATI 221

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
            +   +                 +    +        R        IG            
Sbjct: 222 TEATLL-------------QTPEQFGDILLKVNQDGSRVRLKDVAQIGLGGETYNFDTKY 268

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                           +   T +        + A      +             S     
Sbjct: 269 NGQPTAALGIQLATNANALATAKAVRAKIDEMSAYFPHGLVVKYPYDTTPFVRLSIEEVV 328

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T      LV +V+++ +   +  ++   ++ + ++ T A++S++G ++ + S+ G+VL 
Sbjct: 329 KTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSMVGFSINVLSMFGLVLA 388

Query: 424 IGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           IGL VD  I+V E +      +  S   +      +    +    +      V + F GG
Sbjct: 389 IGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMGQITGALVGVALVLSAVFVPVAFSGG 448

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R F++T+  ++++S+  A+ +  A+   I     +K I                
Sbjct: 449 SVGAIYRQFSLTIVSAMVLSVLVALILTPALCATI-----LKPIPQGHHEEKKGFFGWFN 503

Query: 540 IQFMRARFWGVGISILFSICSICLLFTH 567
             F  +R             S   L  +
Sbjct: 504 RTFNASRDKYHVGVHHVIKRSGRWLIIY 531



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++A  + +     +++   
Sbjct: 245 SRVRLKDVAQIGLGGETYNFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDEMSAYF 304

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 305 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 364

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ++ G   N+ ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 365 GTFAIMSMVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 422

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P+A  GGSV      F++ +   +V++   ++ +   +
Sbjct: 423 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIVSAMVLSVLVALILTPAL 479



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         K        +         +   +    
Sbjct: 803  ERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGSQAPIL 862

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 863  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 919

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+     T  +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 920  TVGLSAKNAILIVEFARE--LQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVLPLAI 977

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 978  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1013



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 136/519 (26%), Gaps = 38/519 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I  ++I  +GLL        +      P         +     G +       
Sbjct: 523  RSGRWLIIYLAVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 576

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L    D + S     G       Q    + +   D   +++ + KV   +  
Sbjct: 577  LANISDYLLTQEKDIVESAFTVNGFSFAGRGQNSGLVFVKLKDYSQRQSSSQKVQALIGR 636

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +     K  L++      I  + +    D  ++       + +    +Q+    +  
Sbjct: 637  MFGRY-AGYKDALVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKD 695

Query: 182  QRLGSHRI-----LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              L   R        Q   + D  +   L  T   +     +                  
Sbjct: 696  PTLRGVRPNGLNDTPQYKVDIDREKANALGVTADAIDQTFSIAW---------------- 739

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  V + ++  G        +  P    P     +                      
Sbjct: 740  --ASKYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNGSGGMVPFSAFATGHWTY 797

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +    I    A         TA    A      +      +  + + +  
Sbjct: 798  GSPKLERYNGISAMEIQGQAAPGKSTGQAMTAMETLAKKLPTGIGYSWTGLSFQEIQSGS 857

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      AI   +V + L  +             + L VI  L   +L G    +  
Sbjct: 858  ----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFF 913

Query: 417  IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
              G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  +
Sbjct: 914  QVGLLTTVGLSAKNAILIVEFARELQQTEKMGPIEAALEAARLRLRPILMTSLAFILGVL 973

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             L      G  +       +   ++ + F AI ++    
Sbjct: 974  PLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1012


>gi|308062826|gb|ADO04714.1| preprotein translocase subunit SecF [Helicobacter pylori Cuz20]
          Length = 323

 Score =  184 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 90/294 (30%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LL   G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILNFMRYSNYGVVVSAILALLALGLLLFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEMLI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ +A+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALMAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|302533400|ref|ZP_07285742.1| protein-export membrane protein SecF [Streptomyces sp. C]
 gi|302442295|gb|EFL14111.1| protein-export membrane protein SecF [Streptomyces sp. C]
          Length = 351

 Score =  184 bits (465), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 85/301 (28%), Positives = 147/301 (48%), Gaps = 14/301 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+  RF   G+SIL +I +I  L   GLN GI+FKGG          V ++    + E
Sbjct: 18  YDFVGKRFLWYGVSILITITAIVALAVQGLNMGIEFKGGAVFTTP-KTAVSVAHATESAE 76

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                D   Q         +R+Q    D+ +   V + +   +      +   N ++VGP
Sbjct: 77  KASGHDAIVQELGTGG---LRIQISGLDTDSAASVKKQLGTDLK---VDAAQINADLVGP 130

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++  K   G+ +  + ++IY+ I F+W  A+ A+  LI D+T T+G +AL G E  
Sbjct: 131 SWGEQIANKAWTGLGVFMVLVVIYLAIAFEWRMAVAALIALIHDLTITVGVYALVGFEVT 190

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++GYS+ D VVV+D +++  K  T     +F ++ ++SIN TL RS+ T++
Sbjct: 191 PGTVIGLLTILGYSLYDTVVVFDGLKEGSKDITKQTRYTFSEIANRSINGTLVRSINTTV 250

Query: 778 AAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A + V  +   GG      ++   ++ +  G+   A SSIFIA P+++ + +       
Sbjct: 251 VALLPVAGLLFIGGGFLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVVDLKEREPAMKA 310

Query: 833 I 833
           +
Sbjct: 311 L 311


>gi|167033432|ref|YP_001668663.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           putida GB-1]
 gi|166859920|gb|ABY98327.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida GB-1]
          Length = 1043

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 79/705 (11%), Positives = 185/705 (26%), Gaps = 65/705 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GLL+      P   + ++P+  P               + +   
Sbjct: 7   KRPNFAWVVALFISLAGLLVI-----PTLPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +   +  +   L     +  F      N   ++ ++F      E     V 
Sbjct: 49  YPGASAKVLVDSVTSIIEESLNGAKNLLYFESTNNSNGMAEVVVTFEPGTDPELAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ--VISHAIEQSMEIIRQRIDQI 174
             L+   +++        +         +++   +  +    +          R   +++
Sbjct: 109 NRLKKAEARMPQAVITQGIQVEQTSAGFLLIYALSYKEGAGQADTTALGDYAARNINNEL 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   +S      N       FG     
Sbjct: 169 RRVPGVGKLQFFSS-EAAMRVWVDPQKLVGYGLSIDDVSNAIRGQNVQVPAGSFGSAPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  +  +                      +                 +   +
Sbjct: 228 SQQELTATLAVQGTL-------------DDPQAFGRVVLRANPDGSLVRLADVARLEVGM 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T +      A L A         V       
Sbjct: 275 ESYNFSSRLNGKPAVAGAVQLAPGANALKTADLVKERLAELSAFFPEGVEYSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + ++ TL ++ LLG ++ +
Sbjct: 335 VDVAIEKVIHTLLEAMVLVFLVMFLFLQNIRYTLIPSIVVPVCLLGTLMVMKLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPVDATIKAMGQVSGAIIGITLVLSAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F  G      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FMPLAFMSGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATMLKPVAPGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +                   RA  + +  + + ++     L        ++ +G   +
Sbjct: 515 AFNRGFARLTERYSVMNNALVRRAGRYMLLYAGILAMLGYFYLRLPESFVPVEDQGYAIV 574

Query: 582 GVLANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            V                        R  L S  +      +  GE   L    Y+    
Sbjct: 575 DVQLPPGASRVRTDATGQALEQFLMSREALASAFLVSGFSFSGMGENAALAFPTYKDWSV 634

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +  + ++   + I              V P     L   G   +
Sbjct: 635 RSAEQSVDAETQAINAQFASHGDGTIMAVNPPPIDGLGNAGGFAL 679



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 88/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V      ++  + S +                 +++    +++    +++   P 
Sbjct: 262 VRLADVARLEVGMESYNFSSRLNGKPAVAGAVQLAPGANALKTADLVKERLAELSAFFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  ++ + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEYSVPYDTSRFVDVAIEKVIHTLLEAMVLVFLVMFLFLQNIRYTLIPSIVVPVCLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S  D   K++ +
Sbjct: 382 LMVMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPVDATIKAMGQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +  ++      +P+A   GSV      F++ +A  I+ +   ++     +
Sbjct: 440 VSGAIIGITLVLSAVFMPLAFMSGSVGVIYQQFSLSLAVSILFSGFLALTFTPAL 494



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 56/143 (39%), Gaps = 8/143 (5%)

Query: 693  ALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+     LI+ I       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLTVMLIVPIGALGAVLAVMVTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVV 807
                 S RD   ++        V TSMA  + V+P+A+  G+      +    +  G++ 
Sbjct: 950  -EKGYSLRDAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLFIYDWRAKN 830
            A    +       +++     + 
Sbjct: 1009 ATLLGVLFVPICFVWVLSLLKRK 1031


>gi|295095292|emb|CBK84382.1| The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile
           Efflux-1 (HAE1) Family [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 1036

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 73/683 (10%), Positives = 189/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P + I                 
Sbjct: 8   RRPVFAWVIAILIMLAGMLAI-----RTLPVAQYPDVAPPS-IK--------ISATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + L         S       I ++F      +    +V   +Q
Sbjct: 54  SAQTLENSVTQVIEQQLTGLDNLLYFTSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + +++ +     +   +++         + + + +  ++    D +   +  
Sbjct: 114 QAESRLPTEVQQSGITVEKSQSNFLLIMGVYDKTDTASSSDIADWLVSNMQDPLARVDGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L       + +       N        G     ++    
Sbjct: 174 GSLQVFGA-EYAMRIWLDPAKLASYSLMPSDVQSAIEAQNVQVSAGKIGALPSSNAQQLT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I   +             +          
Sbjct: 233 ATVRAQSRL-------------QTVDEFKKIIVKSQSNGAVVRISDVARVEMGSEDYTAT 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T        A  +            + +      S  
Sbjct: 280 AKLNGHPAAGMAVMLSPGANALNTATAVKDKIAEFKKSMPEGYDVAYPKDSTEFIKISVE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +
Sbjct: 340 DVIQTLFEAIILVVVVMYLFLQNIRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    R        + +         +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALIAIALVLSAVFLPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F++T+  ++ +S+  A+++  A+   I+ +              F    
Sbjct: 460 FGGSTGVIYRQFSVTIISAMFLSVVVALTLTPALCGSILNHTAPHKKGFFGAFNRFYSKT 519

Query: 537 CIAIQFMRARFW----GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               Q    R      G+ +       ++           +  +   ++ V    P   +
Sbjct: 520 EHGYQNKVLRALRRSGGMLVIYALLCGAMGFAMLKLPGSFLPTEDQGEIMVQYTLPAGAT 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR--VLEMVKKKITEIVPLST 650
            VR+   S Q+ +          + +  ++        Q        +K         +T
Sbjct: 580 AVRTAEVSRQVREWFLTKEKANTDVIFTIEGFSFSGSGQNAGMAFVSLKNWSERKGEENT 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            Q   +   +    +    I  +
Sbjct: 640 AQAIALRATQELSTIRDATIFAM 662



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 89/235 (37%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +S V       +    + +        +  +     +++     ++    +  + +P 
Sbjct: 261 VRISDVARVEMGSEDYTATAKLNGHPAAGMAVMLSPGANALNTATAVKDKIAEFKKSMPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + I +++ +++  +     L     + + +  T
Sbjct: 321 GYDVAYPKDSTEFIKISVEDVIQTLFEAIILVVVVMYLFLQNIRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +  ++      LPMA +GGS       F++     I+ A   S+ +A  +
Sbjct: 439 ISGALIAIALVLSAVFLPMAFFGGSTGVIYRQFSVT----IISAMFLSVVVALTL 489



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 76/246 (30%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +               + G  S   ++G   + ++ +   G S              
Sbjct: 786  VRGSDSTMTPFSAFATTRWEYGPESLVRYNGSAAYEIQGENASGASSGTAMSKMEQLANN 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    + +++  + +     +   W   +  I  + L
Sbjct: 846  LPSGSTWAWSGLSLQEKLASGQAMSLYALSILVVFLCLA---ALYESWSVPISVIMVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +       +L G+  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GVLGAAVAASLRGLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AKVAEGYSLTRAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V P+A+    G +   +    +  G + A   +IF     
Sbjct: 960  RAAQTRLRPIIMTSLAFIAGVTPLAIATGAGANSRVAIGTGIIGGTLAATLLAIFFVPLF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVLVKR 1025


>gi|149908463|ref|ZP_01897126.1| Putative membrane protein SecD [Moritella sp. PE36]
 gi|149808626|gb|EDM68561.1| Putative membrane protein SecD [Moritella sp. PE36]
          Length = 612

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 162/521 (31%), Positives = 273/521 (52%), Gaps = 39/521 (7%)

Query: 17  IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE 76
           + L+ A P++L    L           I LGLDLRGG   +L+VD +   N       D 
Sbjct: 117 LALVSAAPSWLQSMGL---------KPIKLGLDLRGGVQFLLDVDMEPVFNIKALQLVDN 167

Query: 77  LRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLV 136
           LR+  + +G+    +    N  ++       +  +A         +   +     +  + 
Sbjct: 168 LRADFRDKGVRGVRISINHNN-SVQLNLPTDEAKVA---------LLKLMPTSYSQWKVT 217

Query: 137 TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196
            ++   + + + Q     +I+  ++Q+++ +R RI ++GI+E+ +QR G HRI I+LPG 
Sbjct: 218 QSSGLLVEVSIPQAAKTDIINLTVQQNLQTMRSRITELGITEAMVQRQGEHRIRIELPGV 277

Query: 197 QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
           QDP+  + ++G TA ++FH++   ++      G   + ++DG    +     + G H+  
Sbjct: 278 QDPATAKNVIGATASLAFHELKTTSN------GSMVVSNNDGAPIRIARDAILGGEHIID 331

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------VLT 304
           A A+         V+I+ D  G ++    T+ NIGKP+A +                 + 
Sbjct: 332 ARASVGEMG-AAQVNITLDNAGGKKMSNFTKHNIGKPMATLYSEYSRNTDGSTKKTNNII 390

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           +    QA    + +I+G  ++  A  LA +LRAGSL   + IVEER +G  LG+++I  G
Sbjct: 391 SVATIQAQLGSQFRITGAGSMADAQELALLLRAGSLTAPVTIVEERTIGPSLGAENIQNG 450

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A+  GL L ++FM + Y + G VA+ ++  N+I+   LL+L+  A LTLP IAG+VL 
Sbjct: 451 FSALALGLGLTLVFMALWYRRLGWVANVALIANIIMLFGLLALIPGAVLTLPGIAGLVLT 510

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+N+LV ERIR++ R+ +S   ++  GF  A++TI D+NIT LI  VVL+  G G
Sbjct: 511 VGMAVDTNVLVFERIRDKLREGRSFAHAIHGGFDSAFNTIIDANITTLIIAVVLYSIGQG 570

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            V+GFA+T+GL IL SMFT I + RA++  +        + 
Sbjct: 571 PVQGFALTLGLGILTSMFTGILVSRALINKLWGRDTRHDLK 611



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 89/240 (37%), Gaps = 5/240 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    N +       +  +    +  L       G           +  +   +    TI
Sbjct: 373 SEYSRNTDGSTKKTNNIISVATIQAQLGSQFRITGAGSMADAQELALLLRAGSLTAPVTI 432

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +GP +  E I+ G   + +     L+++ + ++      A   LI +I    G  
Sbjct: 433 VEERTIGPSLGAENIQNGFSALALGLGLTLVFMALWYR-RLGWVANVALIANIIMLFGLL 491

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           AL  G    L  +A ++  +G +V+  V+V++R+R  ++      SF   I    +    
Sbjct: 492 ALIPGAVLTLPGIAGLVLTVGMAVDTNVLVFERIRDKLRE---GRSFAHAIHGGFDSAFN 548

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  ++   I  + +   G   +  FA+ +  GI+ +  + I ++  ++  ++    ++
Sbjct: 549 TIIDANITTLIIAVVLYSIGQGPVQGFALTLGLGILTSMFTGILVSRALINKLWGRDTRH 608


>gi|197295595|ref|YP_002154136.1| multidrug efflux system transporter protein [Burkholderia
           cenocepacia J2315]
 gi|195945074|emb|CAR57699.1| multidrug efflux system transporter protein [Burkholderia
           cenocepacia J2315]
          Length = 1063

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 67/574 (11%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+         +  + ++P+  P               + ++ + 
Sbjct: 8   RPIFAWVIAIVLMLAGVASIF-----KMPIAQYPTIAPPT-------------IQIQANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F+     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFSPGTNPDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +  T      ++    N +       + +  +    +D +   
Sbjct: 110 KLSLATPNLPQVVQQLGMQVTKSSSNWLMWFAFNSEDGRMSKEDLTNYVASHVLDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q L        +    DP +L     T   ++      N    G   G    +   
Sbjct: 170 NGVGQTLLLGSQ-FSMRIWLDPVKLTNYSLTPTDVTAAITQQNVQIAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +                
Sbjct: 229 VLQATITESTLL-------------RTPEQFGNILLKVNQDGSQVRLKDVGRAALGSENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L        +             
Sbjct: 276 TFDTKYMGQPTAGLGIQLATGANALATANALRAKIDELSKYFPHGLVVHYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++ L G ++   S+
Sbjct: 336 SIEEVVKTLIEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMGLAGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +     S+    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMSQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALVLTPALCATI-----LKPIPQGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F R+R             S   L  +
Sbjct: 511 FFGWFNRTFDRSRDRYTSGVNHVIRRSGRWLVIY 544



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G  +  ++ Q   G S  Q                  +         +   +    
Sbjct: 816  ERYNGVSSIEIQGQAAEGKSTGQAMAAMEALASKLPEGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVVGALLATMLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+ ++        R  I+ +    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE-LQAGGNMGPVRAAIEAA-RLRLRPILMTSLAFMLGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 79/220 (35%), Gaps = 6/220 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        L        +++A    L     ++++  
Sbjct: 258 SQVRLKDVGRAALGSENYTFDTKYMGQPTAGLGIQLATGANALATANALRAKIDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   + +         R  I + +  +I   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVHYPYDTTPFVRLSIEEVVKTLIEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMGLAGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
           ++  G  V  ++      +P+A  GGSV      F++ + 
Sbjct: 436 SQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIV 475



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 52/530 (9%), Positives = 133/530 (25%), Gaps = 60/530 (11%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WLVI  ++   +G++ A      +      P              +G   ++++  
Sbjct: 536  RSGRWLVIYLAVFLAVGVMFA------RLPKSFLPDED-----------QGYMFMIVQ-T 577

Query: 62   EDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQIQ----------NKITLSFADSRFKE 109
                         D + ++L   ++ +                     + +       ++
Sbjct: 578  PSGSTQETTGKTLDNINTYLTTAEKDVVDSVFTVNGFSFAGRGQNAGLVFVKLKPYEHRQ 637

Query: 110  NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
                KV   +    +  +      ++         +  +     ++  +A      ++  
Sbjct: 638  RSDQKVQALIGRTFAHYSTYKDAMVIPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAA 697

Query: 170  RIDQIGIS---ESTIQRLGSHRILIQLPGEQ-DPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
            R   +G++    +      +            D  +   L  T A +     +       
Sbjct: 698  RGQLLGMAAKDPALALVRPNGLNDTPQYKVDIDREKANALGVTAAAIDQTFSIAW----- 752

Query: 226  FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                             V + ++  G        +  P    P     +    +      
Sbjct: 753  -------------ASQYVNNFLDTDGRIKKVYVQSDAPFRMTPEDMNIWYVRNSAGGMVP 799

Query: 286  TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
                                 V +  I    A+         A    A      +     
Sbjct: 800  FSAFSTGHWIYGSPKLERYNGVSSIEIQGQAAEGKSTGQAMAAMEALASKLPEGIGYSWT 859

Query: 346  IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
             +  + + +            AI   +V + L  +             + L V+  L   
Sbjct: 860  GLSFQEIQSGS----QAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVVGALLAT 915

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIF 464
             L G    +    G++  +GL+  + IL+ E  RE           +           I 
Sbjct: 916  MLRGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQAGGNMGPVRAAIEAARLRLRPIL 975

Query: 465  DSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             +++  ++  + L      G  +       +   ++ + F AI ++    
Sbjct: 976  MTSLAFMLGVLPLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|28572647|ref|NP_789427.1| preprotein translocase subunit SecF [Tropheryma whipplei TW08/27]
 gi|28410779|emb|CAD67165.1| protein-export membrane protein SecF [Tropheryma whipplei TW08/27]
          Length = 322

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 137/318 (43%), Gaps = 16/318 (5%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                   L     +I F+         S ++  +  +   F  G  +GI+F GG Q  +
Sbjct: 3   WFARFSDDLYSGRRSIDFVGRYKIWYSASFVILLVAILGPFFHGGYKFGIEFTGGSQFVI 62

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +   + + R  ++           F               D ++ T+   +      
Sbjct: 63  SDVKQKSIELAREVVKKTVDKPSVVTTFGKG-------LVVRTDQLSDTQSNSVRDALAD 115

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                        +GP   +++ R+GI G++I  + + + + + F+ W  +L AI  L  
Sbjct: 116 TYGVSHDAVAASYIGPSWGQDVTRQGIQGLVIFLLLVFVVMALYFRTWRMSLSAIIALFH 175

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T G + L G+E    AV  +LT++GYS+ D VVV+DR+R+N  L  T   ++ +++
Sbjct: 176 DLIITAGIYGLLGLEITPAAVIGLLTILGYSLYDTVVVFDRVRENRALDPTCSDYKGIVN 235

Query: 763 KSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +++N+T  RS+ TS+ A + V  +      + G S +   ++ +  G++  A S+I IA+
Sbjct: 236 RAVNQTFVRSINTSLIAVLPVASILFIGSLILGASTLSDISVALFIGMLAGAYSTIVIAS 295

Query: 818 PILLFIYDW--RAKNARI 833
           P    +       K  R+
Sbjct: 296 PTYALLCKKLPSGKEKRL 313


>gi|330819493|ref|YP_004348355.1| transporter, hydrophobe/amphiphile efflux-1 family [Burkholderia
           gladioli BSR3]
 gi|327371488|gb|AEA62843.1| transporter, hydrophobe/amphiphile efflux-1 family [Burkholderia
           gladioli BSR3]
          Length = 1035

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 83/686 (12%), Positives = 182/686 (26%), Gaps = 41/686 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L   +   GLL      L    + ++P   P                     
Sbjct: 7   RRPIFAWVLAITVMLGGLLA-----LRTLPVAQYPEIAPTTI---------SIFATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        S     + +I L+F +    +    +V   LQ
Sbjct: 53  DARTVENSVTRVIEQGMTGVDNLQYMSASSESTGEVEIRLTFTNRADPDVAQMQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L    + + L  T      +++           + +    ++    D I      
Sbjct: 113 LVTSQLPTIVQTSGLTVTKSSASFLMVVGFASTDGKLDSADLDDFVVSAMNDTIKRVPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L +       +       N        G +         
Sbjct: 173 GNTQLFGA-AYAMRIWLDPAKLHRYALMPGDIEDALRAQNAQVAAGQLGAQPAVPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  +  +                 +    I                 I          
Sbjct: 232 ATVTAQSRL-------------QTPAQFGNVIVKSGADGAIVRLRDVARIELGAETYTYE 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   +    +     +   T        A L                      S  
Sbjct: 279 SRYNGMPASGLGVNLAPGANAIDTARAVKAAIASLSGTMPKGVQVFYPYDTTPFVTLSIE 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV IV+F+ +   +  L+   +I + ++ TL +L+L G ++   ++  +
Sbjct: 339 EVVKTLIEAVVLVFIVMFVFLQSVRATLIPALAIPVVLLGTLGVLALAGYSINTLTMFAM 398

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLF 478
           VL IGL VD  I+V E +    + +  S   +            +  + + + +   + F
Sbjct: 399 VLAIGLLVDDAIVVVENVERVMHEEGLSPREATRKSMREITGALVGIATVLSAVFVPMAF 458

Query: 479 FFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           F G      R F++T+  ++L+S+  A+ +  A+   +++     +        F    D
Sbjct: 459 FSGSTGIIYRQFSVTIVTAMLLSVLVAMVLTPALCATLLKRGGDHAAKRGLAGWFNRHFD 518

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG--------VLANRP 588
             A+ + R     +     F +  + L+   G  +       + +         V     
Sbjct: 519 RGALAYRRGVQGVLARGRRFLLLFVLLVAVTGWMFVRLPGSFLPVEDQGTLITAVQLPAG 578

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                    L  +    +  +    E    V      G           +K         
Sbjct: 579 AMRDRTEQVLSRVTDYYLKDEKHAVEGVMTVAGYGFGGSGQNVGIAFIRMKDFKDRRKAD 638

Query: 649 STIQNTEIVGPKISRELIRKGIVGVI 674
            + Q            +    +  ++
Sbjct: 639 WSAQAVAQRAQAAFSAIRDAQVYALL 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/206 (17%), Positives = 81/206 (39%), Gaps = 8/206 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               + A    +  +   + + V +    +T         E+++  I  V++  I M ++
Sbjct: 299 AIDTARAVKAAIASLSGTMPKGVQVFYPYDTTPFVTLSIEEVVKTLIEAVVLVFIVMFVF 358

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +         L     + + +  TLG  AL G   N   + A++  IG  V+D +VV + 
Sbjct: 359 LQ---SVRATLIPALAIPVVLLGTLGVLALAGYSINTLTMFAMVLAIGLLVDDAIVVVEN 415

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           +     ++   +S R+   KS+ E  G  V  +       +PMA + GS       F++ 
Sbjct: 416 V--ERVMHEEGLSPREATRKSMREITGALVGIATVLSAVFVPMAFFSGSTGIIYRQFSVT 473

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDW 826
           +   ++++   ++ +   +   +   
Sbjct: 474 IVTAMLLSVLVAMVLTPALCATLLKR 499



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 65/179 (36%), Gaps = 8/179 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G      L       +  IS + + + +   ++ W      + ++ + I   L 
Sbjct: 851  FRHEWTGLSFEERLSGNQATALYAISVLVVFLCLAALYESWSIPFAVMLSVPVGIAGALA 910

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               LFG   ++     +LT IG +  + +++ +   +         S  +    +  + L
Sbjct: 911  GAFLFGQTNDVYFKVGLLTTIGLAAKNAILIVEFALE---REARGASLLEATLDAARQRL 967

Query: 770  GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               + TS A  + VLP+A+    G     +  + +  G++ A    IF    + + +  
Sbjct: 968  RPILMTSFAFILGVLPLALARGAGSGAQNAIGVGVLGGMIAATVLGIFFVPLLFVSVRR 1026


>gi|302874948|ref|YP_003843581.1| protein-export membrane protein SecF [Clostridium cellulovorans
           743B]
 gi|307690434|ref|ZP_07632880.1| preprotein translocase subunit SecF [Clostridium cellulovorans
           743B]
 gi|302577805|gb|ADL51817.1| protein-export membrane protein SecF [Clostridium cellulovorans
           743B]
          Length = 293

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 88/293 (30%), Positives = 156/293 (53%), Gaps = 4/293 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
              ++       IS+L  I  I  L T GLN GIDFKGG  + +   + +D +     ++
Sbjct: 2   FSVIKKTKLWFSISVLIIIAGIVSLTTQGLNMGIDFKGGTIVELSVGKTIDEAEEAKIID 61

Query: 600 SLQIGD---ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++  D   I     D + N   ++  +          L  + +++ +  P + I N+++
Sbjct: 62  IVRTYDADVIYNTAVDSKVNDSTQIDLKSNSGNLSEENLAKIIEEVKKDFPEAKIANSDV 121

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           +G  I  EL +K  + V+I+  AMLIYI  RF+  F + +I  L+ DI   + F+++F I
Sbjct: 122 IGATIGNELKQKASIAVVIAVAAMLIYIAFRFEILFGISSIVALLHDILIVITFYSIFQI 181

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           + +   +AA+LT++GYS+ND +VV+DR+R+N+K    S ++ D+ D SI +T+ RS+ T 
Sbjct: 182 QVDSPFIAAMLTVLGYSMNDTIVVFDRIRENLKNAKKSDTYADIADTSIKQTIHRSILTV 241

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               I++  + + G   + +F +P+  GI     SSIFIA+P  + +    +K
Sbjct: 242 TTTLITISAITI-GVPEVRNFGLPLIVGIAAGCYSSIFIASPTWVLLKKKFSK 293


>gi|117619539|ref|YP_857464.1| RND efflux transporter [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
 gi|117560946|gb|ABK37894.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 1042

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 80/685 (11%), Positives = 179/685 (26%), Gaps = 46/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL       +    ++++P   P               + +    
Sbjct: 9   RPIFASVISIIIVLGGLAA-----MRSLPIEQYPQITPPV-------------VSVTAFY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +        +   S    Q  + + F      +     V  
Sbjct: 51  PGATPEVISQTVAAPLEQQINGVERMLYMQSGSASNGQMNLNVYFEIGTDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  + KK  +    +    + +               S   +   ID++   
Sbjct: 111 RVSAAMAQLPEEVKKQGVTVKKKSTSILQVVTLQSPDGTFDTTYLSNYALLNIIDELKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P RL QL  T + +       N        G +      
Sbjct: 171 PGVGDTTLFGGTDYAMRIWLRPDRLAQLELTPSDVIGAIREQNTQFAAGKIGAQPTTAPI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V+ K  +  +              +    I        +        +       
Sbjct: 231 DFTYTVQTKGRLEDVR-------------EFQNIIIRSMPDGSKIRVKDVARVELGGKDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +        L+          +          
Sbjct: 278 DLLAKANGKPAIGIATYLQPGANAVAVADQVHATMLRLKERFPQDIEYQIPYDTTEFVKI 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTLFEAIVLVFVVVYLFLQNFRATLIPCIAVPVSLIGTFAGMLVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      K  S   +  +        +    +      + 
Sbjct: 398 FGMVLAIGIVVDDAIVVLENVERIMQEKKCSPKEAAILAMQEVSGPVVAIVLVLCAVFLP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF-- 531
           + F GG      + FAIT+ +S+ IS   A+++  A+   +++    K            
Sbjct: 458 VAFMGGMTGVMYKQFAITVAVSVAISGLVALTLSPALCAVLLKEGHHKPARFFVWFNNAF 517

Query: 532 ----FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A    R       I+ +       L+   G     + +G +   V+   
Sbjct: 518 DGLTRRYVRGVAFLNRRVGVAFTIIAFILVSIYGLLMKVPGELVPNEDQGYLLSAVMLPD 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L+  ++         ++  N      F                    +K        
Sbjct: 578 AASLTRTQAVANDFDQMAMANPNVKDVITFSGFDILSNAIISNSGISFITLKDWSERQGA 637

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
                +       +S   +  G V 
Sbjct: 638 GQDSFSLAKTFQGMSLMGLADGFVA 662



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 66/197 (33%), Gaps = 7/197 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALG 695
               + + +    +  +          +              + + + +  ++ +W     
Sbjct: 839  AALEAVADESLGNDAKLEWTGSAYQEKAAAGSAGTAFGFGIVMIFLILAAQYERWSLPFA 898

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             IT +   +   L    L G+  N+     ++TL+G +  + +++ +     +  +   +
Sbjct: 899  VITAVPFALFGALLATWLVGLTNNVYFQIGLVTLVGLAAKNAILIVEFA---VMKHEEGM 955

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
            S  +   ++        V TS+A  +  +P+      G +   +   P+  G++ A   +
Sbjct: 956  SLIESALEAARLRFRPIVMTSLAFILGCVPLVTSSGAGAASRHALGWPVIGGMLAATFIA 1015

Query: 813  IFIAAPILLFIYDWRAK 829
            IF        I     +
Sbjct: 1016 IFFIPLFFRLIMRRSER 1032



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   NL  +  ++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPCIAVPVSLIGTFAGMLVLGFSINLLTLFGMVLAIGIVVDDAIVVLENV--ERI 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           +     S ++    ++ E  G  V   +      LP+A  G   G +   FAI +A  + 
Sbjct: 422 MQEKKCSPKEAAILAMQEVSGPVVAIVLVLCAVFLPVAFMGGMTGVMYKQFAITVAVSVA 481

Query: 807 VAASSSIFIAAPI-LLFIYDWRAKNAR 832
           ++   ++ ++  +  + + +   K AR
Sbjct: 482 ISGLVALTLSPALCAVLLKEGHHKPAR 508


>gi|332525404|ref|ZP_08401564.1| preprotein translocase subunit SecF [Rubrivivax benzoatilyticus
           JA2]
 gi|332108673|gb|EGJ09897.1| preprotein translocase subunit SecF [Rubrivivax benzoatilyticus
           JA2]
          Length = 344

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 92/328 (28%), Positives = 156/328 (47%), Gaps = 27/328 (8%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I FMR       IS L  + ++  +F  GL+  I+F GG  + V  ++P D
Sbjct: 1   MEFFRFRRDIPFMRYTLALNVISFLTFLAAVFFIFHRGLHLSIEFTGGTVVEVAYSQPAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT------------------ 632
           L   R  +E+L  G++  QNF   ++ ++RL  + G+   Q                   
Sbjct: 61  LERTRQAVETLGFGEVQVQNFGTSRDVMIRLPIREGEKQDQVASRVFDALCKAESGSVAT 120

Query: 633 --------RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                     +      + +      +  TE+VGP +  EL R G + +  + + ++ Y+
Sbjct: 121 KEYLTPQGEQVSRPSCSVADGSEPLKLSRTELVGPSVGAELARDGALALAFTVLGIMGYL 180

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             RF+W FA+  I   + D+   LGFFA F  EF+L  +AA+L ++GYSVN+ VV++DR+
Sbjct: 181 AFRFEWKFAVAGIIANLHDVVIILGFFAFFQWEFSLAVLAAILAVLGYSVNESVVIFDRI 240

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+  +     +S   +ID +I  T  R++ T  +  + VL M  +GG  +  FA+ +  G
Sbjct: 241 RETFRKMRK-MSTTQVIDHAITSTTSRTIITHGSTQMMVLSMLFFGGPTLHYFAMALTIG 299

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           I+    SSIF+AA I +++   R    +
Sbjct: 300 ILFGIYSSIFVAAGIAMWLGVKREDLVK 327



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 82/171 (47%), Gaps = 5/171 (2%)

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFSIFLNVILTLALLSLLGA 410
           VG  +G++    G  A+   ++ I+ ++   +  K+ +    +   +V++ L   +    
Sbjct: 153 VGPSVGAELARDGALALAFTVLGIMGYLAFRFEWKFAVAGIIANLHDVVIILGFFAFFQW 212

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNI 468
             +L  +A I+  +G +V+ ++++ +RIRE     +  S    +D   +   S    ++ 
Sbjct: 213 EFSLAVLAAILAVLGYSVNESVVIFDRIRETFRKMRKMSTTQVIDHAITSTTSRTIITHG 272

Query: 469 TA-LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           +  ++   +LFF GG  +  FA+ + + IL  ++++I +   + +++   +
Sbjct: 273 STQMMVLSMLFF-GGPTLHYFAMALTIGILFGIYSSIFVAAGIAMWLGVKR 322


>gi|260769113|ref|ZP_05878046.1| protein-export membrane protein SecF [Vibrio furnissii CIP 102972]
 gi|260614451|gb|EEX39637.1| protein-export membrane protein SecF [Vibrio furnissii CIP 102972]
 gi|315181652|gb|ADT88565.1| preprotein translocase subunit SecF [Vibrio furnissii NCTC 11218]
          Length = 300

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 78/291 (26%), Positives = 145/291 (49%), Gaps = 6/291 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           + + +  +  + R+    +SI   + S+  L   GLN G+DF GG+    + N  V    
Sbjct: 1   MIEFLKARMRKIRYITSVLSIALMVISLAALAIRGLNMGLDFTGGMVTEAVVNSEVTNHQ 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   L+      +S      +  +++R         A       +   + +I     I +
Sbjct: 61  LLDALKPTLGDSVSVTKSGEDGRWVIRYPLAEEGHDAPD-----MDHLLNQISDHVEIIS 115

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
             +VG ++ ++L+ +G + +++  I +L Y+  RF+W  A GA+  L+ D+   LGFFAL
Sbjct: 116 NSMVGSQVGQDLVDQGGLALMLCMICILGYLCFRFEWRLASGALLALVHDVVLVLGFFAL 175

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             +EFNLT  AAVL ++GYS+ND +++ DR+R+ +     + +  D+ D+++  T  R++
Sbjct: 176 TQMEFNLTVFAAVLAVLGYSLNDSIIIADRIRELLLAKQKTPTP-DINDQAVIATFSRTM 234

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            TS    I+V  + + GG+ +  FA  M  GI+    SSI I   +  ++ 
Sbjct: 235 VTSGTTLITVAALWLMGGAPLEGFATAMFIGIISGTWSSISIGTVLPEWLK 285


>gi|24372777|ref|NP_716819.1| preprotein translocase subunit SecF [Shewanella oneidensis MR-1]
 gi|24346858|gb|AAN54264.1|AE015563_4 protein-export membrane protein SecF [Shewanella oneidensis MR-1]
          Length = 294

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 151/288 (52%), Gaps = 9/288 (3%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I   + R+    ISI   + S+ ++   G N+G+DF GG+   V  +R +  S ++ 
Sbjct: 1   MKNINLTKWRYISSAISIFLMLASLTIVCVKGFNWGLDFTGGVVTEVQLDRKITSSELQP 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +    D+S  +      +++R         A T    +   +    +    + NT +
Sbjct: 61  LLNAAYQQDVSVISASEPGRWVLRY--------ADTAQSHVDIAQTLAPLGEVQVLNTSV 112

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++ +EL  +G + ++++ +A+L Y+  RF+W  A GA+  L+ D+   L FF+L  +
Sbjct: 113 VGPQVGKELAEQGGLALLVAMLAILGYLSYRFEWRLASGALFALVHDVMFVLAFFSLTQM 172

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT +AAVL ++GYS+ND +++ DR+R+ +      ++ +++ +++I  T  R++ TS
Sbjct: 173 EFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPK-LAIQEINNQAIVATFSRTMVTS 231

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               ++V  + + GG  +  F+I M  GI+    SSI +   +  F+ 
Sbjct: 232 GTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLG 279


>gi|158334930|ref|YP_001516102.1| RND multidrug efflux transporter [Acaryochloris marina MBIC11017]
 gi|158305171|gb|ABW26788.1| RND multidrug efflux transporter [Acaryochloris marina MBIC11017]
          Length = 1058

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 77/618 (12%), Positives = 177/618 (28%), Gaps = 50/618 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +GL+      LP   + ++P   PK              + ++ +
Sbjct: 8   KRPVLTTVCALLILLMGLV-----CLPTLPIAQYPDISPK-------------QVSIQAN 49

Query: 62  EDDFVNGFLQM-YSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                   ++   +  L   +   EG+   +     +    IT +F ++R ++  A  V 
Sbjct: 50  FIGADAATVEDGVTSILEREINGVEGLRYMTSSSSNSGSSSITATFENNRDQDLAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V S+L    ++  +  T +    ++      +     +I  S        + +  
Sbjct: 110 NRVSSVESQLPAAVQQTGVRVTKQSSSILMGFGLFSEDDEYDSIFLSNYADLYLTNALKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP RL +   T   +       N        G     + 
Sbjct: 170 VNGVGNVTIFGERKYAMRLWLDPERLAKRNLTGQDVVDALQEQNIQVGAGQIGQPPAPEG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +  +  ++              T +    +  D              +      
Sbjct: 230 QQFQIDIRAESRLN--------------TIEEFEALVVDSTDGNLIKLQDVGRVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                            S     +            A L     P     +         
Sbjct: 276 YGSFLRFRGKDAVGLGISQIPGSNALDVARGVKETMATLSEDFPPGMTYDIGFDTTDYVE 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S +    T     GLV++V+F+ +   +  ++   +I +++I T   + L G ++   +
Sbjct: 336 QSLTEVIWTLIQAVGLVVLVIFVFLQDWRTTIIPAVTIPISLIGTFVFVKLFGFSINSLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G+ L  G+ VD  I+V E +  + +    +    ++        + I  S +   +  
Sbjct: 396 LFGLTLATGMVVDDAIVVVENVAAKIQNEGIEPRQAAIVAMEELTGAVIATSLVLMAVFV 455

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSI 523
            V FF G      + FA+T+  +I +S F A+++   +   +                  
Sbjct: 456 PVAFFPGTTGALYQQFALTIAFAISLSTFNALTLTPTLSGLLLRQNPSIPDWIAPAFNWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + +        F     + L +  +             + +G     V
Sbjct: 516 NRQQDRLRQSYGNILDWMNRFKYFILAIFAALLTFTAWIYTTVPSAFLPEEDQGYFLTIV 575

Query: 584 LANRPVDLSVVRSNLESL 601
            A   V L      ++ +
Sbjct: 576 GAPDGVSLEYTSDVMKKI 593



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 89/244 (36%), Gaps = 6/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       + L  V       +      +    +   L   Q    +++   R ++   
Sbjct: 252 VVDSTDGNLIKLQDVGRVELGAENYGSFLRFRGKDAVGLGISQIPGSNALDVARGVKETM 311

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
             ++E  P     +          + + + I  +I +   +++ I++    W   +    
Sbjct: 312 ATLSEDFPPGMTYDIGFDTTDYVEQSLTEVIWTLIQAVGLVVLVIFVFLQDWRTTIIPAV 371

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ + +  T  F  LFG   N   +  +    G  V+D +VV + +    K+    I  R
Sbjct: 372 TIPISLIGTFVFVKLFGFSINSLTLFGLTLATGMVVDDAIVVVENV--AAKIQNEGIEPR 429

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
                ++ E  G  + TS+      +P+A + G+       FA+ +AF I ++  +++ +
Sbjct: 430 QAAIVAMEELTGAVIATSLVLMAVFVPVAFFPGTTGALYQQFALTIAFAISLSTFNALTL 489

Query: 816 AAPI 819
              +
Sbjct: 490 TPTL 493



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 58/143 (40%), Gaps = 12/143 (8%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMK 749
             +  + ++ L +   LG   L G   ++     ++ LIG +  + +++ +   ++R+   
Sbjct: 896  PVIIMLSVPLAVLGALGAQVLRGFSNDIYCQIGLVMLIGLASKNSILIVEFANQLREE-- 953

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                 +       ++  + L   + T+++   S+ P+ V    G     S    +  G+ 
Sbjct: 954  ----GLPIPKAALQAAQQRLRPILMTAISTLSSIFPLVVASGAGAGSRQSLGTAVFGGMF 1009

Query: 807  VAASSSIFIAAPILLFIYDWRAK 829
            VA   S+F+   + + I  +  +
Sbjct: 1010 VATFLSLFVVPILYIIIKGFSDR 1032


>gi|117920106|ref|YP_869298.1| acriflavin resistance protein [Shewanella sp. ANA-3]
 gi|117612438|gb|ABK47892.1| acriflavin resistance protein [Shewanella sp. ANA-3]
          Length = 1031

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 71/629 (11%), Positives = 177/629 (28%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISLLLVAFGLVA-----FDKLPLREYPNIDPPIV---------SIETNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++++TL F  SR  E+ A+ V   + G
Sbjct: 55  SAAVVESRITQLIEDRISGVEGIRHVSSSSSDGRSQVTLEFDISRNIEDAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +      +  I+      D      +E +    R   D++ + +   
Sbjct: 115 LLDNLPEEADPPEVQKANGGDEVIMWLNLVSD--QMTTLELTDYTRRYLSDRLSVVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 MIRIGGGKVYAMRVWLDRQALASRSLTVADVEAALRAENVELPAGSLESKERHFTVRLE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RSYRTAEDFANLVISQGEDGYLVKLGDVAKVEIGSEEERIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +          L   +               +      S   
Sbjct: 274 RGNKEAMIGLGVSKQSTANTLEVARAVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFTAMVLVIIVIYLFLGSVRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+ M  +++ S   A+++   M   +          ++ +D         
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSIVALTLSPMMCSKLLKPASQDSWLVRKVDSIMTGISRG 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + +     R     + + I      +            + +G + L V   +      
Sbjct: 514 YQNSLEKAMARPVLMSILVLIALGSSVLLAQKVPQEFAPQEDRGSLFLMVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           + S +  ++   +   +    K  L+R  
Sbjct: 574 IESYMNEVENRLMPLVDSGDIKRLLIRAP 602



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 74/205 (36%), Gaps = 13/205 (6%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   +++ +   +   + +    ++ +      +E+ +     +++  I + +++     
Sbjct: 299 AVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T       G   NL  + A++  IG  V+D +V+ + +    +
Sbjct: 356 VRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S          E     + T++      +P+    G    +   FA+ M+  ++
Sbjct: 413 RIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVI 472

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
               SSI +A  +   +     K A
Sbjct: 473 ---FSSI-VALTLSPMMCSKLLKPA 493



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L      G   N+ +   ++ L+G 
Sbjct: 860  LLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGALIGLWFTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++  + L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVDFDRAIIQASCQRLRPILMTGITTAAGAVPLVLAAGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +  GI++A   +IF+          
Sbjct: 977  GAETRFVIGVVVLSGIMLATLFTIFVIPTAYGLFAR 1012


>gi|114047901|ref|YP_738451.1| acriflavin resistance protein [Shewanella sp. MR-7]
 gi|113889343|gb|ABI43394.1| acriflavin resistance protein [Shewanella sp. MR-7]
          Length = 1031

 Score =  184 bits (465), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 72/629 (11%), Positives = 176/629 (27%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISLLLVAFGLVA-----FDKLPLREYPNIDPPIV---------SIETNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++++TL F  SR  E+ A+ V   + G
Sbjct: 55  SAAVVESRITQLIEDRISGVEGIRHVSSSSSDGRSQVTLEFDISRNIEDAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +      +  I+      D      +E +    R   D++ + +   
Sbjct: 115 LLDNLPEEADPPEVQKANGGDEVIMWLNLVSD--QMTTLELTDYTRRYLSDRLSVVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 MIRIGGGKVYAMRVWLDRQALASRSLTVADVEAALRAENVELPAGSLESKERHFTVRLE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RSYRTAEDFANLVISQGEDGYLVKLGDVAKVEIGSEEERIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +          L   +               +      S   
Sbjct: 274 RGNKEAMIGLGVSKQSTANTLEVARAVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFTAMVLVIIVIYLFLGSVRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+ M  +++ S   A+++   M   +          ++ +D         
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSIVALTLSPMMCSKLLKPASQDSWLVRKVDSIMTGISRG 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     R     V + I      +            + +G + L V   +      
Sbjct: 514 YQSSLEKAMARPVLMSVLVLIALGSSVLLAQKVPQEFAPQEDRGSLFLMVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           + S +  ++   +   +    K  L+R  
Sbjct: 574 IESYMNEVENRLMPLVDSGDIKRLLIRAP 602



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 74/205 (36%), Gaps = 13/205 (6%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   +++ +   +   + +    ++ +      +E+ +     +++  I + +++     
Sbjct: 299 AVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T       G   NL  + A++  IG  V+D +V+ + +    +
Sbjct: 356 VRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S          E     + T++      +P+    G    +   FA+ M+  ++
Sbjct: 413 RIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVI 472

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
               SSI +A  +   +     K A
Sbjct: 473 ---FSSI-VALTLSPMMCSKLLKPA 493



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L      G   N+ +   ++ L+G 
Sbjct: 860  LLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGALIGLWFTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++  + L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVDFDRAIIQASCQRLRPILMTGITTAAGAVPLVLAAGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +  GI++A   +IF+          
Sbjct: 977  GAETRFVIGVVVLSGIMLATLFTIFVIPTAYGLFAR 1012


>gi|150016415|ref|YP_001308669.1| preprotein translocase subunit SecF [Clostridium beijerinckii NCIMB
           8052]
 gi|149902880|gb|ABR33713.1| protein-export membrane protein SecF [Clostridium beijerinckii
           NCIMB 8052]
          Length = 291

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 79/288 (27%), Positives = 147/288 (51%), Gaps = 8/288 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS++  +  +  L   GLN+GIDFKGG ++ +  +  ++   V + + S    
Sbjct: 7   KTKLWFSISLIIIVIGMGFLCVRGLNFGIDFKGGSEIVLQLDESINKDDVDTIIRSYAPD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
             +    + +       + +  D  +    L +   +    +    + +   +G  + RE
Sbjct: 67  ASTNTINNNQ------YEIKSADLDSDKLGLIVSDLESKYKLDDKVLVSQNEIGSSVGRE 120

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L +  I  ++ +   ML+YI IRF++ F + AI   I DI  T+  +++F I  N   +A
Sbjct: 121 LTQNSIYALLAAFAVMLVYIAIRFEFKFGVAAIAATIHDILVTISVYSIFYIPVNTPFIA 180

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT++GYS+ D +V++DR+R+N K+   + S  ++ D S+ ET+ RS+YTS A  ++++
Sbjct: 181 AILTIVGYSMCDTIVIFDRIRENTKIMRRAKSI-EVADVSLTETIARSLYTSSATVVTII 239

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            M       + +F IP+  GI+  A SSI IA+PI +++ D      +
Sbjct: 240 AMNFL-VPSVQAFTIPLIVGIISGAYSSICIASPIWVYLKDRVRSQKK 286


>gi|251790358|ref|YP_003005079.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           zeae Ech1591]
 gi|247538979|gb|ACT07600.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           zeae Ech1591]
          Length = 1044

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 72/634 (11%), Positives = 170/634 (26%), Gaps = 50/634 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G L       PQ  + R+PS  P               + +    
Sbjct: 8   RPVFAWVIALFIVLLGTLAI-----PQLPIARYPSVAPPT-------------VSITASY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  +      L       +K       S+      +I ++F      E     V  
Sbjct: 50  PGATPQTMNDAVVGLIERGLSSVKNLLYFESSVDTSGLAQINVTFKPGTDPELAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ +  +L    ++N L   +     +++     D      +E S  + R  ++++   
Sbjct: 110 RIKSIEPRLPQTVRQNGLQVESASSGFLMMVSLTSDNGRYDQVELSDYMARNIVEELRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L     T   +S      N        G   +    
Sbjct: 170 DGVGRVQLFGA-EQAMRIWVDPNKLLSYGLTMNDLSTAITQQNAQIAPGRVGDAPILAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +    +        R        +       
Sbjct: 229 RVTIPLTVQGQL-------------ETPEQFAAIVLRAREDGSRVTLADVARVELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                        A        +   T        A L+          +          
Sbjct: 276 GFSVRENGKDATAAAIQLAPGANAVRTAAAIVQRMAELKPSMPAGIGYSLPFNTAPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+++ +   ++ L+      + ++ T  ++   G ++ + ++
Sbjct: 336 SIEQVVRTLAEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALLGTFTVMLAAGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +     ++  S   +           I    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERLMAQERLSPKAATTRAMKEITGAIIGITLVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           +    G      R F ++M +SIL S F A+++  A+   +          +       +
Sbjct: 456 MALASGSVGVIYRQFTLSMAVSILFSAFLALTLTPALCATLLTPVTDGHHEKRGFFGGFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                              R+    +    L  + +             + +G     + 
Sbjct: 516 RRFERLTQHYAVGTRALLRRSGSMLLLFVALTGVLAWIFRELPSDFLPQEDQGYFMTSIQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                  +     +++ +    S        + L
Sbjct: 576 LPSDATEARTMEVVKTYEQHIASRPGIQSNMSIL 609



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 86/241 (35%), Gaps = 14/241 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L+ V       Q    S +    +            ++V     +     ++   +
Sbjct: 258 SRVTLADVARVELGAQSYGFSVRENGKDATAAAIQLAPGANAVRTAAAIVQRMAELKPSM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I + +  +  + + + + +++     R+    A+ A   L+
Sbjct: 318 PAGIGYSLPFNTAPFVKISIEQVVRTLAEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALL 377

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              T  L      G   N+  +  ++  IG  V+D +VV + +     +    +S +   
Sbjct: 378 GTFTVMLAA----GFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAQERLSPKAAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            +++ E  G  +  ++      +PMA+  GSV      F + MA  I+ +A  ++ +   
Sbjct: 432 TRAMKEITGAIIGITLVLSAVFIPMALASGSVGVIYRQFTLSMAVSILFSAFLALTLTPA 491

Query: 819 I 819
           +
Sbjct: 492 L 492



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/414 (10%), Positives = 127/414 (30%), Gaps = 15/414 (3%)

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
             +  SI G          +  +    +++ + +N +   S      +  S+I +     L
Sbjct: 603  QSNMSILGFGFSGSGP--NAAMAFTTLKDWSARNGATAQSEVALAQQTMSSIREGTAMTL 660

Query: 472  IATVV--LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
            +   +  L    G ++R    T      +    A  +  A    I+       +      
Sbjct: 661  MPPAIDELGTSSGFSLRLQDRTGQGYNALKAAEATLLTLAAQSRIVTGVYPDGLPPGSTV 720

Query: 530  RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            R  +         +        +S       +      G    +  +      +  +  +
Sbjct: 721  RLNIDRQKAEALGVPFNTLSDTLSAAIGSLYVNDFPNAGRMQQVIIQADAPARMQLDDVL 780

Query: 590  -----DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 + +    +L+ +     +       +          G +       E + +    
Sbjct: 781  KLYVRNNAGGMVSLKEVVTPVWNDTPLQLTRYQGFLAVRISGSAAPGVSSGEAMAEMERL 840

Query: 645  IVPLSTIQNTEIVGPKISR-ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
               L         G  +   +   +  + +++S + + + +   ++ W   L  +  + L
Sbjct: 841  AAQLPPGFTVAWTGQSLQERQSAAQAPMLLLLSMVVVFLVLAALYESWSIPLSVMLVVPL 900

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    L  +  ++     ++T+IG S  + +++ +  R   +L+    +  +   
Sbjct: 901  GLLGAVLAVTLRDMPNDVFFKVGLITVIGLSAKNAILIVEFAR---QLHAQGQTLTEAAV 957

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +    L   + TS+A  + V+P+ +  G+        +  G+     S+  +A
Sbjct: 958  TAARLRLRPILMTSLAFALGVVPLMLASGAS-AETQHAIGTGVFGGMVSATVLA 1010


>gi|103486934|ref|YP_616495.1| hydrophobe/amphiphile efflux-1 HAE1 [Sphingopyxis alaskensis
           RB2256]
 gi|98977011|gb|ABF53162.1| Hydrophobe/amphiphile efflux-1 HAE1 [Sphingopyxis alaskensis
           RB2256]
          Length = 1054

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 81/574 (14%), Positives = 169/574 (29%), Gaps = 41/574 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++      L    ++++PS  P               L + V  
Sbjct: 9   RPIFSWVIAIGILLAGIIA-----LRGLPVEQYPSVAPP-------------SLTIGVTY 50

Query: 63  DDFVNGFLQM-YSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+   +  +   L   EG    +     N    ITL+F      +N   +V  
Sbjct: 51  PGADARTLEQNVTQVIEQELNGVEGFLYMASTSESNGTASITLTFEAGTDIDNAQMEVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L  D ++  +  T      +++         +  +E +     + +D++   
Sbjct: 111 RLRRVEQRLPEDVRRQGISVTEANSGFLLIVAITSKSGNTDPMEVNNFANTRVLDELRRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     + A+        N+   G   G + +    
Sbjct: 171 NGVGNVQAF-APEYAMRVWLDPQKLASYGLSAAEALAAVQEQNSQTPGGQLGDQPIAKGA 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               ++  +   +             K  +    I                 +    A  
Sbjct: 230 QINAVITTQGRFT-------------KPEQFESIILRANPDGSAVTLADVGRVELGAASY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L    +           +   T E      A L  G  P     +          
Sbjct: 277 LFSSELNGKPMAGLAVQLTPGANALSTAEGVRAQMAELEKGFPPDISWSIPYDTTPFVEL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++    + + +      L + G ++ + ++
Sbjct: 337 SIEEVVKTLVEAMILVFLVMFLFLQNWRATVIPTIVVPIALAGACLGLWMFGFSINVLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +     +     + +      +  S I    +  +   + 
Sbjct: 397 FGMVLAIGILVDDAIVVIENVERIMNEEHLPPYEATVKAMGQITSAIIGITLVLIAVFIP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R F++T+ +SI  S   A+++  A+   +++              F  
Sbjct: 457 MAFFPGSTGGIYRQFSMTLAISIAFSALLALTLTPALCATLLKPHDQTRRTGPVGVFFDR 516

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
             D     F R      G         +  L   
Sbjct: 517 FFDRFNGWFGRTTDRYQGGVGKMLAAPLRWLGVF 550



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 77/224 (34%), Gaps = 6/224 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V            S +        L        ++++    +     ++ +  P 
Sbjct: 261 VTLADVGRVELGAASYLFSSELNGKPMAGLAVQLTPGANALSTAEGVRAQMAELEKGFPP 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            I + +  ++ + I + + +++  + W   +     + + +   
Sbjct: 321 DISWSIPYDTTPFVELSIEEVVKTLVEAMILVFLVMFLFLQNWRATVIPTIVVPIALAGA 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   N+  +  ++  IG  V+D +VV + +     +    +   +   K++ +
Sbjct: 381 CLGLWMFGFSINVLTLFGMVLAIGILVDDAIVVIENV--ERIMNEEHLPPYEATVKAMGQ 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVA 808
                +  ++      +PMA +    G +   F++ +A  I  +
Sbjct: 439 ITSAIIGITLVLIAVFIPMAFFPGSTGGIYRQFSMTLAISIAFS 482



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 710  FFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F++F G+  ++     ++T+IG +  + +++ +   +         S  D + +++   
Sbjct: 916  LFSMFRGLSADIYFNVGLITIIGLAAKNAILIVEFAIEQEAE---GKSTLDAVMEAVKLR 972

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A  + ++P+ +    G +   +    +  G++ A    IF      L +  
Sbjct: 973  LRPIIMTSLAFILGMVPLVIATGAGAASRIAVGSGVMGGMIAATLLGIFFIPLFYLSVRK 1032

Query: 826  WRAKNA 831
            W ++  
Sbjct: 1033 WLSRKR 1038


>gi|170694874|ref|ZP_02886024.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
 gi|170140234|gb|EDT08412.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
          Length = 1045

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 66/552 (11%), Positives = 155/552 (28%), Gaps = 39/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ + +  IGL            + ++P  +P               + +    
Sbjct: 10  RPRFATVVSAFLTLIGLGAMFV-----LPVAQYPEIVPPT-------------VQVTTSY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S +   +    +T++F               
Sbjct: 52  PGASAETIARTVATPLEQQINGVENMLYMSSQSTGDGRLTVTVTFRIGTDLNVAQMLTQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q    +L  D ++  +         ++             +  S        D +   
Sbjct: 112 RVQDALPRLPEDVRRLGVQVRKSTPSILLAVHLYSPDRTRDTLYLSNYATLHVKDTLARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP ++       +++       N      +        SD
Sbjct: 172 QGVGDVQFQGAREYAMRIWIDPDKVAANNLNASEVLTALRAQNLQVSAGVLNQPPTAGSD 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  VE    +S                +    +   +   R         +    A  
Sbjct: 232 AYQINVEALGRLS-------------TPQQFSDVVVKSDAQGRVTRIRDIGLVEVGAADY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +     +  +   +   +     +        L+          +          
Sbjct: 279 GSTAFMDRDNASTLLIYAEPGANSLAVEQQVLSAMRGLKNEFPAGMDYKIIYDPTIFIGK 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  +   LV+ V+F+ +   +  ++   +I ++++ +  +L+  G +L   S+
Sbjct: 339 SVDEVIVTIFVAILLVVGVVFLFLQNWRATIIPVVAIPVSLLGSFIVLATFGISLNNLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL +G+ VD  I+V E +    R   S   +          A  +I  +     I +
Sbjct: 399 FGLVLAVGIVVDDAIVVVENVERNMRSGMSPVEAAHRTMDEVGGALLSIALTLCAVFIPS 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   R FA+T+  S +IS F ++++  A+   + +  +        L++  L 
Sbjct: 459 AFLSGISGLFFRQFAVTIAASTVISCFVSLTLSPALCAVLFKSHEPHIASHGGLAQRLLH 518

Query: 535 PDCIAIQFMRAR 546
                      R
Sbjct: 519 AGFDRFNRGFDR 530



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 75/251 (29%), Gaps = 10/251 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V +  V           +   N                   A  R+ E+  + + 
Sbjct: 801  QFGEMVPVGTVAQMENRTIPYRVPRYNLYPAAEVQGVAAPGIATGTALHRMEELAHQVLP 860

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            + +               +  L+  G   + +  + +         W   L  +  + + 
Sbjct: 861  QGISFEWTDLAYQQQQHGTPTLLVFGAAALFVFLVLV----AQYESWKLPLAIVLIVPMC 916

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I  ++      G+  ++ A    + L+G +  + +++ +  R   +      +  D    
Sbjct: 917  ILASVTGLIARGMPIDILAQIGFVVLVGLAAKNAILIVEFAR---QKEDEGTAPVDAAVH 973

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + TS A  + V P+AV    G  +  S    + FG++      +       
Sbjct: 974  AARTRLRPILMTSFAFILGVAPLAVATGAGAEMRQSLGTAVLFGMLGVTCFGLLFTPAFY 1033

Query: 821  LFIYDWRAKNA 831
            +FI  +  K  
Sbjct: 1034 VFIRKFGRKER 1044



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 94/257 (36%), Gaps = 10/257 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V ++    ++ +R                  +++    L            V + V  
Sbjct: 252 VVVKSDAQGRVTRIRDIGLVEVGAADYGSTAFMDRDNASTLLIYAEPGANSLAVEQQVLS 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWYFALGA 696
            +  +           +    +  + +     ++   +A+L+ + + F     W   +  
Sbjct: 312 AMRGLKNEFPAGMDYKIIYDPTIFIGKSVDEVIVTIFVAILLVVGVVFLFLQNWRATIIP 371

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           +  + + +  +    A FGI  N  ++  ++  +G  V+D +VV + + +NM+   + +S
Sbjct: 372 VVAIPVSLLGSFIVLATFGISLNNLSLFGLVLAVGIVVDDAIVVVENVERNMR---SGMS 428

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
             +   ++++E  G  +  ++      +P A   G        FA+ +A   V++   S+
Sbjct: 429 PVEAAHRTMDEVGGALLSIALTLCAVFIPSAFLSGISGLFFRQFAVTIAASTVISCFVSL 488

Query: 814 FIAAPILLFIYDWRAKN 830
            ++  +   ++     +
Sbjct: 489 TLSPALCAVLFKSHEPH 505


>gi|88860104|ref|ZP_01134743.1| hydrophobe/amphiphile efflux-1 family protein [Pseudoalteromonas
           tunicata D2]
 gi|88818098|gb|EAR27914.1| hydrophobe/amphiphile efflux-1 family protein [Pseudoalteromonas
           tunicata D2]
          Length = 1053

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 69/597 (11%), Positives = 169/597 (28%), Gaps = 44/597 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL       +    + ++P   P               + +    
Sbjct: 9   RPIFAFVISIVLVLAGLAA-----MRALPIAQYPEIAPPV-------------VQVTAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  L+      + + +   EG+   S     +    I ++F      +  A  V  
Sbjct: 51  PGASAQVLEQTVAAPIENAITGVEGMMYMSSTSTSSGVTTIEVTFEIGTDVDQAAVNVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V ++L  + ++  ++        + +           ++  S  +    +D+I   
Sbjct: 111 RVKQVEARLPEETRRQGVIVQKGSSSFLQVHAFYSPDGSRESLWTSNYVTMNILDRIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
             T            +     P  + QL  T   ++      N+       G      S 
Sbjct: 171 PGTTNVQIFGAKDYAMRIWLRPDLMSQLKITVDDVTHAVRQQNSQYAAGKIGSTPTSSSP 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                            +           +    I                 +       
Sbjct: 231 QEIVY------------SVTAQGRLSTPEEFANIIVRANPDGSNLRLKDIARVELGSKDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +            +   +            A ++        ++           
Sbjct: 279 DFEGTINGKQAVLLGIFLQPGANALDVAAEVNQTVAEIKEQFPTGLAHLTPYDTTRFVEV 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ ++++ T A L +LG ++   ++
Sbjct: 339 SIREVMKTLVEAMVLVFLVVYLFLQNWRATLIPTLAVPVSLLGTFAGLYMLGYSINTLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    + +  S   +           +    +      V 
Sbjct: 399 FGMVLSIGIVVDDAIVVLENVERLMHEEKLSPRDAAIKAMQEVSGPVVAIVLVLCSVFVP 458

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   R FAIT+ +++ +S   A+++  A+ + I++ +  ++           
Sbjct: 459 IAFLGGLTGELFRQFAITISIAVSLSGVVALTMTPALCVLILKPEHKQTAGFFVWFNKRF 518

Query: 534 IPDCIAI-----QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        F+R    G  +       +I L      +   D   G  +  + 
Sbjct: 519 HAMTGGYVNAVSFFVRRGILGFVLVAGMVFITIGLWQKTPGSLVPDEDQGFYISAVF 575



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 86/242 (35%), Gaps = 6/242 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +       +  D        +   L        +++     +     +I E  P     
Sbjct: 267 DIARVELGSKDYDFEGTINGKQAVLLGIFLQPGANALDVAAEVNQTVAEIKEQFPTGLAH 326

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
            T     +     IR+ +  ++ + + + + +++  + W   L     + + +  T    
Sbjct: 327 LTPYDTTRFVEVSIREVMKTLVEAMVLVFLVVYLFLQNWRATLIPTLAVPVSLLGTFAGL 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   N   +  ++  IG  V+D +VV + +     ++   +S RD   K++ E  G 
Sbjct: 387 YMLGYSINTLTLFGMVLSIGIVVDDAIVVLENV--ERLMHEEKLSPRDAAIKAMQEVSGP 444

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V   +      +P+A  G   G +   FAI ++  + ++   ++ +   + + I     
Sbjct: 445 VVAIVLVLCSVFVPIAFLGGLTGELFRQFAITISIAVSLSGVVALTMTPALCVLILKPEH 504

Query: 829 KN 830
           K 
Sbjct: 505 KQ 506



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 61/161 (37%), Gaps = 7/161 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + + ++ I + + +   + +W   L  +  L       L    + G+  ++     ++TL
Sbjct: 870  LALTLAVIMVFLILAALYERWSLPLSVLLALPFGTFGALIAIWIAGMTNDVYFQIGLVTL 929

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + +++ +     +  Y    S      ++        + TS+A  + V+P+ + 
Sbjct: 930  LGLASKNAILIVE---YALMKYQQGWSASAAALEAARLRFRPIIMTSLAFILGVVPLVLS 986

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               G     S    +  G++ A   +IF       ++   R
Sbjct: 987  SGAGAGARHSVGTGVMGGMMAATFLAIFFVPLFFYWLTQRR 1027


>gi|189485575|ref|YP_001956516.1| protein translocase subunit SecF [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287534|dbj|BAG14055.1| protein translocase subunit SecF [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 310

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 90/304 (29%), Positives = 152/304 (50%), Gaps = 6/304 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 + I F+  R+    IS +L  +     ++  GLNYGIDF GGI + +     V 
Sbjct: 1   MRFFRSVDIDFIGNRYKFFTISGLLLLLTVGAFIYRGGLNYGIDFTGGILMRISFQNEVG 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  VR  +E   I     Q      N ++    +  ++  +   L     ++        
Sbjct: 61  LQDVRIAVEESGINSFELQ---SSGNLVMIRIKKDLEAQEEFETLIKSSIQLRFPDNPVK 117

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLG 709
           I+  E +GP +   L ++ +   + + + M++Y+  RFK     + ++  +I DI  +LG
Sbjct: 118 IEGIEYIGPTVGEYLSKQAVYAFLFAFLVMIVYVAFRFKSSLWGIVSVVGIIHDIVISLG 177

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  L   E N+T VAA+LT++GYS+ND +V++DR+++N+KL      F  +I+KSINE L
Sbjct: 178 FVILANKEINITIVAALLTVVGYSINDTIVLFDRIKENLKLLVK-EDFVAVINKSINEVL 236

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            R++ TS+  FI    +  +GG V+ +FA  M  G V+   S+IF+ AP++        K
Sbjct: 237 VRTIVTSLTVFIVACSLFFFGGEVMHTFAYIMIIGTVLGVFSTIFVCAPLICEWRIKTNK 296

Query: 830 NARI 833
             +I
Sbjct: 297 RLKI 300


>gi|170725718|ref|YP_001759744.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           woodyi ATCC 51908]
 gi|169811065|gb|ACA85649.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella woodyi ATCC 51908]
          Length = 1040

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 69/686 (10%), Positives = 184/686 (26%), Gaps = 40/686 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ +++  +GL+       P   +  FP   P  +I+                 
Sbjct: 9   RPKFAFVISTVLTIVGLISI-----PILSVAEFPEIAPP-QIN--------VSTSYSGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +   + ++             +  ++++F      +    KV   +Q 
Sbjct: 55  ANIVKDTIAQPIEAEVNGVEGMLYMQSKSANDGSYSLSVTFEVGTDPDMAQVKVQNRVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + K+  +    +    +++      +    ++  +        D +       
Sbjct: 115 AMPRLPEEVKRQGVNVEKQSANILMVVNLVSPKETFDSLFITNYAGLNVTDALARQNGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    DP+++  L  T   +       N        G   +      QY
Sbjct: 175 KVQVIGALDYAIRIWLDPNKMASLGVTAKDVIGALQEQNIQVAAGRIGAAPVDPDQQFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  +                 +    +        +        +           
Sbjct: 235 TLQTKGRL-------------KDPKEFRNVMIRANNDGSKVIVGDVARVELGSQTYDAQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +      A L           V          S + 
Sbjct: 282 KLNNKPSAIIAIYQSPDANALDVGKAVKAEMAKLSERFPNDLDYEVLYDTTEFVETSINE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+ V+F+ +   +  L+   +I +++I T A L   G ++   S+  ++
Sbjct: 342 VVQTLFISIALVVFVVFIFLQDVRSTLIPAIAIPVSLIGTFAFLLAFGMSINTVSLFALI 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +           +  + +  L         
Sbjct: 402 LAIGIVVDDAIVVVENVTRLMQDEGLSPKEATSKAMKEVTGPVIATTLVLLAVFAPTAVM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
               G     F++T+ +S+LIS   A+++  A+   +             + +       
Sbjct: 462 PGITGQMYAQFSVTICISVLISSINALTLSPALCASLLRPPKQHTKGFHATFNKYFERVT 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 ++    +     V  + L ++              ++ K    + +       L
Sbjct: 522 GKYMGLVSSLTRKLSLVLVVYACLIAVTGGVAKILPSGFVPMEDKKAFMVDIQLPDGASL 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +     ++ L    ++    +   +           +     ++  +        P    
Sbjct: 582 NRTEEVMKELVELTLAEPGVENVIHASGFSILTGSVASNGGLMIVSLSTWDERDTPDMVE 641

Query: 652 QNTEIVGPKISRELIRKGIVGVIISA 677
                     ++      +  +  S 
Sbjct: 642 SAIVAKLQ--AKYAANPSVKAMAFSL 665



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 66/202 (32%), Gaps = 9/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +               T     +  +E+    +  +I     +  Y+++      W  
Sbjct: 835  DAITAMERAANETLPTGYTFEWTGQTYQEIKAGNLAPLIFGLALLFTYLFLVAQYESWTI 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I  + + +        L G + NL A   ++ LIG +  + +++ +  +   +L  
Sbjct: 895  PFAVILAVPIAVLGAFLNILLVGSDLNLYAQIGLVLLIGLACKNAILIVEFAK---QLRE 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  D  + +        + T+ +  + VLP+ +    G     +    +  G++ A 
Sbjct: 952  EGKSILDAGETAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGSRRALGYSVFGGMLAAT 1011

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
                 +     + +   R K  
Sbjct: 1012 IVGTLLVPVFYVMMQTMREKFK 1033



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 96/251 (38%), Gaps = 8/251 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q  D   +  +     +   Q    +++   + ++    K++E  
Sbjct: 260 SKVIVGDVARVELGSQTYDAQGKLNNKPSAIIAIYQSPDANALDVGKAVKAEMAKLSERF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P            +     I + +  + IS   ++  ++I        L     + + + 
Sbjct: 320 PNDLDYEVLYDTTEFVETSINEVVQTLFISIALVVFVVFIFLQDVRSTLIPAIAIPVSLI 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F   FG+  N  ++ A++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 380 GTFAFLLAFGMSINTVSLFALILAIGIVVDDAIVVVENV--TRLMQDEGLSPKEATSKAM 437

Query: 766 NETLGRSVYTSMAAFISVLP----MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            E  G  + T++   ++V      M    G +   F++ +   +++++ +++ ++  +  
Sbjct: 438 KEVTGPVIATTL-VLLAVFAPTAVMPGITGQMYAQFSVTICISVLISSINALTLSPALCA 496

Query: 822 FIYDWRAKNAR 832
            +     ++ +
Sbjct: 497 SLLRPPKQHTK 507


>gi|237800925|ref|ZP_04589386.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331023781|gb|EGI03838.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 803

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 79/705 (11%), Positives = 176/705 (24%), Gaps = 65/705 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   RRPNLSWVLALFILLAGLMA-----LPALPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                   L       +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLTDSVTSVIEDELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVL--SQNNIDQVISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++       D      +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIFTLNYTGDSANKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNTAIRAQNVQVPAGSFGSSPGT 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSAVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L A         +       
Sbjct: 275 QDYSFESRLNGKRAVAGAVQLSPGANAIGTARAVKQRLTELSANFPEGVEFSIPYDTSSF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+++ +   ++ L+    + + +  TLA++ LLG ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMYLFLQNIRYTLIPTIVVPVCLAGTLAIMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGKFTHRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            V        +               R    ++ +      +  GE   L     +    
Sbjct: 575 DVQLPPAATRARTDVTAQLLENYMLSREATSAVTMLLGFSFSGMGENAGLAFPTLKDWSE 634

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +          +            V P     L   G   +
Sbjct: 635 RGTGQSAAEEAAAFNQHFAGLGDGTVMAVTPPPIDGLGTSGGFAL 679



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 84/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGKRAVAGAVQLSPGANAIGTARAVKQRLTELSANFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSIPYDTSSFVDVAIDKVIYTLIEAMVLVFLVMYLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500


>gi|126668982|ref|ZP_01739921.1| Acriflavin resistance protein [Marinobacter sp. ELB17]
 gi|126626566|gb|EAZ97224.1| Acriflavin resistance protein [Marinobacter sp. ELB17]
          Length = 1047

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 68/522 (13%), Positives = 156/522 (29%), Gaps = 39/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   GL   +        +  +P   P                     
Sbjct: 9   KRPVFATVLSLLIVVFGLAALM-----GLPVREYPDIDPPVV---------SISTDYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    +   S ++       S  Q +++ ++ F  SR  +  A+ V   +  
Sbjct: 55  AAEVVDTQITELIEGAISGIEGIRAIESSTEQGESRTSIEFNTSRNIDIAANDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++++L  +    ++         ++      D     + E S    R   D+  + +   
Sbjct: 115 ISNQLPEEADAPVVSKADSDARPMMWITLRSDVW--DSAELSDYADRVLADRFSVLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  +L     T A++       N               +   + 
Sbjct: 173 DVRIGGERRYAIRVWLDREKLAARDVTVAEVEQALRANNVELPAGSVESSTRNFTVRAEG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                           ++     G          N+   +       
Sbjct: 233 RLTT--------------------VDEFRNLVVRRSGNDLLRLGEVANVQMGVENDSGSL 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +     +      A +R    P                S   
Sbjct: 273 RANGKTSIGLGIIRQSKANTVAVSDAVQAELAQIRESLPPEVSIAESYDESVFIRASIKE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV++V+F+ +   +  L+   +I + VI     L  LG ++ + ++  ++
Sbjct: 333 VITTLAISVALVILVIFLFLRSWRATLIPAVTIPVAVIGAFIGLGFLGFSINVLTLLAVI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I+      ++   +   G  +    +  + +T +   V + F G
Sbjct: 393 LAIGLVVDDAIVMLENIQRRIDNGEAPLLAAYHGARQVAFAVIATTVTLVAVFVPISFMG 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G   R    F  T+  +++ S F A+++   +    +R    
Sbjct: 453 GNVGRLFAEFGFTLAAAVVFSSFVALTLAPMLCSKWLRPSPK 494



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 84/241 (34%), Gaps = 7/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V +    ++    S +        L  ++    ++VA +  ++    +I E +P     
Sbjct: 257 EVANVQMGVENDSGSLRANGKTSIGLGIIRQSKANTVAVSDAVQAELAQIRESLPPEVSI 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFF 711
                     R  I++ I  + IS   +++ I      W   L    T+ + +       
Sbjct: 317 AESYDESVFIRASIKEVITTLAISVALVILVIFLFLRSWRATLIPAVTIPVAVIGAFIGL 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  + AV+  IG  V+D +V+ + +    +      +          +    
Sbjct: 377 GFLGFSINVLTLLAVILAIGLVVDDAIVMLENI---QRRIDNGEAPLLAAYHGARQVAFA 433

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + T++      +P++  GG+V      F   +A  +V ++  ++ +A  +         
Sbjct: 434 VIATTVTLVAVFVPISFMGGNVGRLFAEFGFTLAAAVVFSSFVALTLAPMLCSKWLRPSP 493

Query: 829 K 829
           K
Sbjct: 494 K 494



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 66/161 (40%), Gaps = 7/161 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             +   ++ + + + +  +F+ W   L  + ++ L IT  L      GI  N+ +   ++ 
Sbjct: 856  FITFGLAFLIVFLVLAAQFESWIHPLIIMLSVPLSITGALMALWWTGISLNIYSQIGIIM 915

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G    + +++ +      +L     S RD I +         + T+++     +P+ +
Sbjct: 916  LLGLMAKNGILIVEFAN---QLRDQGYSVRDAIVEGSVLRFRPVLMTTISTVFGAVPLVL 972

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                G     +  + +  G+V A S ++FI   +   +  +
Sbjct: 973  ATGAGAESRTAIGVVILGGLVFATSMTLFIVPVLYNLLARF 1013


>gi|24373447|ref|NP_717490.1| AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
 gi|24347731|gb|AAN54934.1|AE015631_10 AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
          Length = 1031

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 71/629 (11%), Positives = 175/629 (27%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISLLLVAFGLVA-----FGKLPLREYPNIDPPIV---------SIETNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++++TL F  SR  E+ A+ V   + G
Sbjct: 55  SAAVVESRITQLIEDRISGVEGIRHVSSSSSDGRSQVTLEFDISRNIEDAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +      +  I+      D      +E +    R   D++ + +   
Sbjct: 115 LLDNLPEEADPPEVQKANGGDEVIMWLNLESD--QMTTLELTDYTRRYLADRLSVVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 MIRIGGGKVYAMRVWLDRQALASRSLTVADVEAALRAENVELPAGSLESKERHFTVRLE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RSYRSAEDFANLVIVQGEDGYLVKLGDVARVEVGSDEDRIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +          L   +               +      S   
Sbjct: 274 RGNRESMIGLGVSKQSTANTLEVARGVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFTAMVLVIIVIYLFLGSVRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+ M  +++ S   A+++   M   +          ++ +D         
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSIVALTLSPMMCAKLLKPAEQDSWLVRKVDSIMTGISRR 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     +     V + I                   + +G + L V   +      
Sbjct: 514 YQSSLEGAMTKPVLMLVIVLIALGSSVFLAQKVPQEFAPQEDRGSLFLMVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           + S +  ++   +   +    K  L+R  
Sbjct: 574 IESYMTEVESRLMPLVDSGDIKRLLIRAP 602



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 76/244 (31%), Gaps = 10/244 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   + +       V L  V           I F+        L   +    +++   R 
Sbjct: 240 FANLVIVQGEDGYLVKLGDVARVEVGSDEDRIMFRGNRESMIGLGVSKQSTANTLEVARG 299

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFA 693
           +  +  KI   +P                  I++    +  + + ++I I          
Sbjct: 300 VNALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLGSVRAM 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    T+ + +  T       G   NL  + A++  IG  V+D +V+ + +    +    
Sbjct: 360 LIPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIH---RRIEE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAAS 810
             S          E     + T++      +P+    G    +   FA+ M+  ++    
Sbjct: 417 GDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVI---F 473

Query: 811 SSIF 814
           SSI 
Sbjct: 474 SSIV 477



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L      G   N+ +   ++ L+G 
Sbjct: 860  LLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGALLGLWFTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++  + L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVDFDRAIIQASCQRLRPILMTGITTAAGAVPLVLATGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +  GI++A   +I++          
Sbjct: 977  GAETRFVIGVVVLAGIMLATLFTIYVIPTAYGLFAR 1012


>gi|187918871|ref|YP_001887902.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Burkholderia phytofirmans PsJN]
 gi|187717309|gb|ACD18532.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phytofirmans PsJN]
          Length = 1055

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 59/540 (10%), Positives = 133/540 (24%), Gaps = 39/540 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +           + +FP   P               + +    
Sbjct: 10  RPIFASVLSIILVVAGTVAMF-----NLPIAQFPDIAPPT-------------ITVSATY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + Q  +  L   +        +   S       +T  F            V  
Sbjct: 52  PGASAEVVAQNVAAPLEQQVNGADNMMYMNSSSSSTGNMTLTAYFNIGTDPSLAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L        +         +++               +       +D +   
Sbjct: 112 RVNLALPTLPDSVTAQGVSVQKRSSAFMMVIAIYSPDNAFDQSYVANYANVYVLDALKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ +L  T A +       N        G        
Sbjct: 172 PGANQASIFGSADYAMRIWIKPDRMAKLSITVADVQQAISNQNQQFSAGRLGQSPTNAPV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  K  ++                   + +      A         +        
Sbjct: 232 QQTFPVATKGRMT------------KPADFDNIILRAGSGDASTIRIKDIGHAELGAKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +        L+    P     V          
Sbjct: 280 SLRGRYNGKTATLIAVYQQPGANALQVAKQVHATLEQLQKAFPPGLKYEVALDTTEFVQE 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  LV   ++ ++++     + + G ++ + ++
Sbjct: 340 SIGEVIHTLRDAVILVILVVFIFLQSFRATLVPLLAVPVSILGAFIGMLVFGFSVNMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473
            G+VL IG+ VD  I+V E +             +              I    +   I 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMTEFGLPPKEAAKHAMDEVTGPVIAIVLVLLAVFIP 459

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   + FA+T+ +S++IS   A+++  A+   +++    K            
Sbjct: 460 VAFLSGITGQLYKQFAVTIAVSVVISGIVALTLSPALAAILLKPGTHKKNRFFLWFNKRF 519



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 79/200 (39%), Gaps = 8/200 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 LE ++K     +      +T     +   E+I      VI+  + + I++    
Sbjct: 308 KQVHATLEQLQKAFPPGLKYEVALDTTEFVQESIGEVIHTLRDAVILVILVVFIFLQ--- 364

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L  +  + + I        +FG   N+  +  ++  IG  V+D +VV + + +NM
Sbjct: 365 SFRATLVPLLAVPVSILGAFIGMLVFGFSVNMLTLFGMVLAIGIVVDDAIVVIENVERNM 424

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
             +   +  ++    +++E  G  +   +      +P+A      G +   FA+ +A  +
Sbjct: 425 TEF--GLPPKEAAKHAMDEVTGPVIAIVLVLLAVFIPVAFLSGITGQLYKQFAVTIAVSV 482

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++   ++ ++  +   +  
Sbjct: 483 VISGIVALTLSPALAAILLK 502



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 76/222 (34%), Gaps = 6/222 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
             NF              +       ++I   V                ++     I+   
Sbjct: 817  NNFPAAKITGDAAPGHSSGESIAAMEQIAHEVLGEGYSYAWSGQAYEEKQAGSTAILVFG 876

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             + + + + +  +++ W   +G +  +   I   L    L G+E ++     +  LI  +
Sbjct: 877  FALLMVFLILAAQYEKWSLPIGVLLAVPFAIFGALIGILLRGMEDDVYFQIGLTVLIALA 936

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++++   +  +     +S  D   K+    L   + TS+A  +  +P+A+     
Sbjct: 937  AKNAILIFEFAVEMREKEA--LSPYDAALKAAKLRLRPIIMTSLAFILGCVPLAIASGAS 994

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +   S    + FG++ A   ++F        +    ++  +
Sbjct: 995  AASRRSLGTGVIFGMLGATVIALFFIPMFFWGLETLSSRGKK 1036


>gi|78047989|ref|YP_364164.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036419|emb|CAJ24110.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1041

 Score =  184 bits (465), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 81/690 (11%), Positives = 183/690 (26%), Gaps = 53/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL      L    ++++P   P               + +    
Sbjct: 8   RPNFAWVVAIFISLAGLLA-----LRTLPVEKYPEVAPP-------------QISISATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +       +   L           S      +IT++F            V   
Sbjct: 50  PGASAQVVNDAVTSVIEQELNGARDMLYYDSSSSNGSAQITITFQPGTDPNIAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI--SHAIEQSMEIIRQRIDQIGI 176
           ++   S+L     +  L         ++L              +  +    R   D+I  
Sbjct: 110 IRQSESRLPAAVTQLGLQVEQTTAGFLMLYSLVYKDATAAQDVVRLNDYAARVVNDEIRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    D   LR    +   ++      N        G R     
Sbjct: 170 VPGVGRVQFFGA-EAAMRVWVDTQALRGYGLSIVDVNNAIRAQNLQVAAGSLGERPGAQD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +                       +    I   +             +   L  
Sbjct: 229 QELTTTL-------------VVHGLMESPQEFGQIILRAQANGAVVHLSDVAKLELGLEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T+         L           V   +     
Sbjct: 276 YQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRQRLQELSQRFPADITYSVPFDSSTFVN 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV +V+F+ +   ++ L+    + + ++ T A++ LLG ++ + S
Sbjct: 336 VAIRKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGTFAMMKLLGFSVNMMS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +      +  S   +     ++    I    +      +
Sbjct: 396 MFAMVLAIGILVDDAIVVVENVERLMAGEGLSPRDASIKAMTQVGGAIVGITLVLTAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L F  G      R F+  + +SIL S F A+++  A+    +     +       + F 
Sbjct: 456 PLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPALCATFLVPIDGRHEKKGFFAWFD 515

Query: 533 LIPDCIAIQF--------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                +  +F         RA  + +  ++L     +  +         + +G + + + 
Sbjct: 516 RNFSALTSRFDQLNHRLVRRAGRYMLVYAVLLCALGLAYVRLPEAFVPQEDEGYMIVDMQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                  S  R+  + +   +         ++  +   +    S A   +     K  +E
Sbjct: 576 LPPGASYSRTRAAGQQV---NDYLAARPSMQDVTLVYGFSFSGSGANAAMAFPSLKDWSE 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                ++ +           +    I+ V+
Sbjct: 633 RGDSESVASEVAAANAALGRISDATIMAVM 662



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 94/251 (37%), Gaps = 10/251 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V      L+      Q   G            G++VA    +    +++++  P 
Sbjct: 261 VHLSDVAKLELGLENYQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRQRLQELSQRFPA 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            IRK +  ++ +   + + +++  +   + L     + + +  T
Sbjct: 321 DITYSVPFDSSTFVNVAIRKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N+ ++ A++  IG  V+D +VV + +     +    +S RD   K++ +
Sbjct: 381 FAMMKLLGFSVNMMSMFAMVLAIGILVDDAIVVVENV--ERLMAGEGLSPRDASIKAMTQ 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI----L 820
             G  V  ++      LP+A   GSV      F+  +A  I+ +   ++ +   +    L
Sbjct: 439 VGGAIVGITLVLTAVFLPLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPALCATFL 498

Query: 821 LFIYDWRAKNA 831
           + I     K  
Sbjct: 499 VPIDGRHEKKG 509



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + +          + G+  ++     ++T+IG +  + +++ +  ++  
Sbjct: 888  SWAIPFSVMLIVPIGAIGATAAVWVAGLSNDVYFKVGLITIIGLAAKNAILIVEFAKE-- 945

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             L+       D   ++        V TS+A  + V+P+ +  G+   S    +  G++  
Sbjct: 946  -LHAQGARVPDAAMQAARLRFRPIVMTSLAFILGVIPLVIARGAGATSQN-ALGTGVIGG 1003

Query: 809  AS--SSI-FIAAPILLFI 823
                S++  +  PI    
Sbjct: 1004 MLAASTLGVVFTPIFFTW 1021


>gi|108563923|ref|YP_628239.1| preprotein translocase subunit SecF [Helicobacter pylori HPAG1]
 gi|107837696|gb|ABF85565.1| protein-export membrane protein [Helicobacter pylori HPAG1]
          Length = 323

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 156/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILNFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVIALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ + L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEI-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|271501229|ref|YP_003334254.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Dickeya
           dadantii Ech586]
 gi|270344784|gb|ACZ77549.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           dadantii Ech586]
          Length = 1055

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 191/689 (27%), Gaps = 50/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           + ++P   P               + ++   
Sbjct: 9   RPVFAWVIAIVIMLAGALSI-----ESLPVAQYPDVAPP-------------SIAIKASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   L            S      +IT +F      +    +V  
Sbjct: 51  PGASADSLENSVTQVIEQQLTGLDGLLYFSSSSDSSGDVRITATFTQGTNPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S+L  + ++  +  T  ++  +++         S A + +  ++    D +   
Sbjct: 111 KVQQATSRLPTEVQQQGITVTKSQQDFLLIMALYDTTDKSTAADIADYMVSNLQDPLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L       + +S      N        G +      
Sbjct: 171 EGVGSIQVFGSQ-YAMRIWMDPTKLAAYSLMPSDISSAIEAQNTQVSAGKIGAQPASRDQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   E             +       
Sbjct: 230 QLTATVTAQSRL-------------KTPEQFRDIIVKSESSGALVHLGDVARVELGNEDY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +   T E          A           + +      
Sbjct: 277 TTTTRLNGHPAAGIAVMLSSGANALATAERVKAKVEEFTAQMPKGYEVSYPKDSTDFIKV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + ++ T  +L++ G ++   ++
Sbjct: 337 SVEEVVRTLFEAILLVVLVMFLFLQNLRATLIPAVAVPVVLLGTFGVLAVFGYSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      K  S   + +       S +    +      + 
Sbjct: 397 FGMVLAIGLLVDDAIVVVENVERLMRDKGLSPVAATEQSMREISSALVGVALVLSAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           + FFGG      R F+IT+  S+L+S+  A+++  A+   +                  +
Sbjct: 457 MAFFGGSTGVIYRQFSITIVSSMLLSVVVALTLTPALCAALLKPVAHAPSNANGFFARFN 516

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               +        +         +     ++  +  +  +   G     + +G + +   
Sbjct: 517 RGYENVQQRYTGRVTHVITGPWRYLALYGVVIVVMGVLFVRLPGGFLPNEDQGDVMVQFT 576

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                  +      ES++   ++ +  + E  F++      G           +K     
Sbjct: 577 LPAGATEARTSKVGESIEHYFLNEEKNNVEAIFVISGFNFSGSGQNAGMAFVALKNWSQR 636

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               ++         +    +    +  +
Sbjct: 637 PGQANSSTAIAQRAMQALSAIRDAQVFTM 665



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 88/235 (37%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    + +        +  +     +++A    ++   ++ T  +P 
Sbjct: 261 VHLGDVARVELGNEDYTTTTRLNGHPAAGIAVMLSSGANALATAERVKAKVEEFTAQMPK 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +         +  + + +  +  + + +++ +++  +     L     + + +  T
Sbjct: 321 GYEVSYPKDSTDFIKVSVEEVVRTLFEAILLVVLVMFLFLQNLRATLIPAVAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A+FG   N   +  ++  IG  V+D +VV + +     +    +S     ++S+ E
Sbjct: 381 FGVLAVFGYSINTLTLFGMVLAIGLLVDDAIVVVENV--ERLMRDKGLSPVAATEQSMRE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
                V  ++      LPMA +GGS       F+I     IV +   S+ +A  +
Sbjct: 439 ISSALVGVALVLSAVFLPMAFFGGSTGVIYRQFSIT----IVSSMLLSVVVALTL 489



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 63/156 (40%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++S + + + +   ++ W      +  + L +   +    + G+E ++    A+LT IG 
Sbjct: 880  VMSILVVFLCLAALYESWSIPFSVMLVIPLGVVGAVLAATVRGLENDVYFQVALLTTIGL 939

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            S  + +++ +   +    Y    +  +   +  +  L   + TSMA    V P+A+    
Sbjct: 940  SAKNAILIVE-FAE--AAYQRGATLYEAALEGASTRLRPVLMTSMAFIAGVFPLAIATGA 996

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G +   S    +  G + A   +IF+     + +  
Sbjct: 997  GANSRISIGSGIVGGTLTATVLAIFLVPMFFVMVRR 1032


>gi|148269211|ref|YP_001243671.1| protein-export membrane protein SecF [Thermotoga petrophila RKU-1]
 gi|147734755|gb|ABQ46095.1| protein translocase subunit secF [Thermotoga petrophila RKU-1]
          Length = 293

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 143/293 (48%), Gaps = 4/293 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM      + IS++    SI  +FT G N+G++F GG ++ V            
Sbjct: 1   MRKEIDFMGKSKIFITISLILIAVSIVSIFTRGFNFGVEFTGGSEIIVRFENKQVTEDDI 60

Query: 596 SNLESLQIGDISF---QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
               S    + +           +     +Y            +   ++  E +    + 
Sbjct: 61  RTAISQISEEFAKARIVEIRSAGDPSNVQKYSIIVPKTYEPDEKQKIQEEMEKLLSGKVV 120

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +   +    + E+ R     ++++ + +LIYI IRF++ F + A+  LI D+  T+GFF+
Sbjct: 121 SFNEISGTAAEEIRRGTWTAILVALVVLLIYITIRFRFIFGIAAVVALIHDVLITMGFFS 180

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG E N+ AVAA LTL+GYS+ND +V+ DR+R+NM+ Y    +  ++++ SIN+ L R+
Sbjct: 181 LFGYEINVAAVAAFLTLLGYSLNDTIVLSDRIRENMRRY-RGRNMENIVNMSINQVLART 239

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + TS+  F  V  + ++ G+ +  FA  M  G +V   SS +I +PI++    
Sbjct: 240 INTSLTTFFVVFVLLLFAGNAVKPFAFGMTVGTIVGTYSSFYIVSPIIVKWTK 292


>gi|157370718|ref|YP_001478707.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Serratia
           proteamaculans 568]
 gi|157322482|gb|ABV41579.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Serratia
           proteamaculans 568]
          Length = 1051

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 66/689 (9%), Positives = 184/689 (26%), Gaps = 49/689 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL+           + ++P   P               + +   
Sbjct: 7   RRPVFAWVIAIIIMLCGLMSI-----NSLPISQYPDVSPP-------------QISISAT 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   L+      +   L            S       I ++F      +    +V 
Sbjct: 49  YPGADAETLENSVTQVIEQQLTGLDGLLYFSATSSSDGSVSINVTFDQGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   S+L  +     +     +   +++     +   +   + S  ++    D +  
Sbjct: 109 NKVQQAESRLPAEVTAQGVTVKKSQSSFLLIVGLYDETDKASMADISDYLVSNIQDPLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    +P+++       + +       N        G       
Sbjct: 169 IDGVGDVQVFGS-EYAMRIWLNPTKMASFSLMPSDVETAIEAQNTQVSAGKVGDLPSGAD 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V+ +  +                 +    I   +             +      
Sbjct: 228 QQLTATVKAQSRL-------------QTPEQFRNIILKSDSSGALVRLGDVARVELGNED 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L     +       A  +   T +      A  +            + +     
Sbjct: 275 YSSSARLNGHPASGIAVKLAAGANALNTAKLVKAKVAEYQTSMPHGYKVAYPKDSTDFIN 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+IV+F+ +   +  L+   ++ + ++ T  +L+  G ++   +
Sbjct: 335 ISIEEVVKTLIEAVVLVVIVMFVFLQNLRTTLIPTITVPVVLLGTFGVLAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +      +      + +         +    +      +
Sbjct: 395 LFGMVLAIGLLVDDAIVVVENVERVMREEKLPPREATEKSMKEITGALVGIAMVLSAVFL 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIF--------IIRYKKMKSID 524
            + FFGG      R F++T+  S+++S+  A+++  A+           +     +   +
Sbjct: 455 PMAFFGGSTGVIYRQFSVTIVASMVLSVILALTLAPALCATLLKPAHEELTNKGLLGKFN 514

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                      D +         + +   +L    ++  +         + +G + +   
Sbjct: 515 RGYNRLQEKYADKVGRVIHSPMRYLLLYGLLLIAAAVMYMRLPTGFLPNEDQGVVMVQYT 574

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                  +   +  + ++   ++ +  +    F +      G           +K     
Sbjct: 575 LPAGATNARTSAVSDEVKDYFLNDEKANVSTIFTINGFGFSGSGQNAGMAFVSLKDWSLR 634

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +T             ++    +  +
Sbjct: 635 SGSANTADAIAKRAMAHFAKIRDAQVFSM 663



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/139 (22%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T G  A FG   N   +  ++  IG  V+D +VV + +     
Sbjct: 362 LRTTLIPTITVPVVLLGTFGVLAAFGYSINTLTLFGMVLAIGLLVDDAIVVVENV--ERV 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  R+  +KS+ E  G  V  +M      LPMA +GGS       F++ +   +V
Sbjct: 420 MREEKLPPREATEKSMKEITGALVGIAMVLSAVFLPMAFFGGSTGVIYRQFSVTIVASMV 479

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++ +A  +   +  
Sbjct: 480 LSVILALTLAPALCATLLK 498



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            IS + + + +   ++ W      +  + + +  +L    L G+E ++    A+LT+IG 
Sbjct: 878 AISLVVVFLCLAALYESWSIPFAVMMVVPMGVVGSLLAITLRGLENDIYFQVALLTIIGL 937

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           S  + +++ +   +    Y    +      ++    L   + TS+A    VLP+AV  G+
Sbjct: 938 SAKNAILIVEFAEE---KYLRGETLIAAAVEASRMRLRPILMTSLAFSAGVLPLAVSSGA 994


>gi|330829119|ref|YP_004392071.1| protein-export membrane protein SecD [Aeromonas veronii B565]
 gi|328804255|gb|AEB49454.1| Protein-export membrane protein SecD [Aeromonas veronii B565]
          Length = 600

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 151/521 (28%), Positives = 279/521 (53%), Gaps = 31/521 (5%)

Query: 18  GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL 77
           G+  A       S    + + +  + I LGLDLRGGS L++ VD D  ++   +   D L
Sbjct: 96  GVDSAALTLEFHSNAPAWITRLGADPIKLGLDLRGGSQLLIGVDVDFVIDNQTKNLVDTL 155

Query: 78  RSFLKKEGIGVFSMRQI-QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLV 136
           R+  ++  +   S+ +  Q  + ++  +   +E+    +               +    +
Sbjct: 156 RTRFREANLRGASVTRSAQGAVAVTLPEVAEQESWLSIIKESA--------GTRQDQWKL 207

Query: 137 TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196
           T +  ++ +VLS+     ++++A+ Q++ I+++RI+++GI E+++ R G   I I+LPG 
Sbjct: 208 TRSGNDLKLVLSEAERTLLVNNAVTQNLSILKKRINELGIVEASVVRQGQDGIRIELPGV 267

Query: 197 QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
            +P + ++++G TA ++F++   ++          ++ D +G    +  K  ++G H+  
Sbjct: 268 HNPKQAKEVIGATASLAFYEAKADSHF--------YIADRNGQAVGMARKPVLTGEHIVD 319

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP---------- 306
           A AN      +P V+I  D +G  +  + +R ++GKP+A V       A           
Sbjct: 320 ARANMGEMG-QPQVNIVLDTLGGSKMNQFSRQHVGKPMATVFTEYKTNAQGKLRAQSEVI 378

Query: 307 --VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                Q     + +I+G  ++  A  LA +LRAG+L   L I+EER++G  LG  +I  G
Sbjct: 379 NVATIQTALGNQFRITGIGSLPEAQELAMLLRAGALTAPLKILEERSIGPTLGMQNIEAG 438

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLG 423
             A+  G+  ++LFM+  Y K+G VA  ++  N+++ + +L++L  A LTLP IAG+VL 
Sbjct: 439 FTALAFGMAGMMLFMMAWYRKFGWVAITALVANLLMQVGMLAVLPGAVLTLPGIAGLVLT 498

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+AVD+++L+ ERIR+  R+  S+  ++D G+  A+ TIFD+NIT LI  VVL+  G G
Sbjct: 499 VGMAVDTHVLIFERIRDRLREGGSLANAIDFGYRSAFHTIFDANITTLICAVVLYSIGSG 558

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            ++GF+IT+ L +L SM T I   RA++  +      +++ 
Sbjct: 559 PLQGFSITLILGLLSSMITGIWGTRAIINPLWGRSSERTLK 599



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 75/180 (41%), Gaps = 6/180 (3%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I  G   +      M++++   ++  F   AIT L+ ++   +G  A+  
Sbjct: 425 SIGPTLGMQNIEAGFTALAFGMAGMMLFMMAWYR-KFGWVAITALVANLLMQVGMLAVLP 483

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R+R  ++      S  + ID            
Sbjct: 484 GAVLTLPGIAGLVLTVGMAVDTHVLIFERIRDRLRE---GGSLANAIDFGYRSAFHTIFD 540

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL-FIYDWRAKNARI 833
            ++   I  + +   G   +  F+I +  G++ +  + I+    I+         +  ++
Sbjct: 541 ANITTLICAVVLYSIGSGPLQGFSITLILGLLSSMITGIWGTRAIINPLWGRSSERTLKV 600


>gi|300867356|ref|ZP_07112013.1| preprotein translocase subunit SecF [Oscillatoria sp. PCC 6506]
 gi|300334662|emb|CBN57181.1| preprotein translocase subunit SecF [Oscillatoria sp. PCC 6506]
          Length = 329

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 78/315 (24%), Positives = 150/315 (47%), Gaps = 26/315 (8%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-------------- 583
           +    ++ R     +S    +  +  +     N  I       L                
Sbjct: 1   MKFSVIKYRSIWWAVSCAIILAGLVSMVISWTNPNIGAPLRPSLDFIGGTKLQFELDCTQ 60

Query: 584 --LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL---VRLQYQPGDSVAQTRVLEMV 638
               ++P+D++ VR  L+S  + + S Q      N     + ++ +  D   +T++   +
Sbjct: 61  PANCSKPIDIAAVRQILDSQGLANSSIQLVTDANNKSKQGISIRTKTLDVEQRTKLQTAL 120

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            +K+    P       + VGP + R+L   G++ +++S   +  Y+ +RF+  +A  A  
Sbjct: 121 SEKLGAFDPK--STKIDTVGPTLGRQLFTSGLLALMLSFAGITGYLTLRFQLDYAFFAFV 178

Query: 699 TLILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            L  D+  TLG F++ G+    E +   V A+LT+IG+SVND VV+YDR+R+ +KL    
Sbjct: 179 ALFHDVLITLGIFSILGLVQGVEVDSLFVVALLTIIGFSVNDTVVIYDRVREVIKLNPN- 237

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
                ++D ++N+TLGRS+ T+M   +++  + ++GG  +  FA+ +  G +  A SSIF
Sbjct: 238 EPINQVVDDAVNQTLGRSINTTMTTLLTLFAIFLFGGETLKYFALALIVGFIAGAYSSIF 297

Query: 815 IAAPILLFIYDWRAK 829
           +A+ +L +  +   K
Sbjct: 298 VASTLLAWWRERTGK 312


>gi|15646156|ref|NP_208340.1| preprotein translocase subunit SecF [Helicobacter pylori 26695]
 gi|6647833|sp|O26073|SECF_HELPY RecName: Full=Protein-export membrane protein secF
 gi|2314729|gb|AAD08587.1| protein-export membrane protein (secF) [Helicobacter pylori 26695]
          Length = 323

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 156/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKRTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVIALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNATQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|224417823|ref|ZP_03655829.1| hypothetical protein HcanM9_00968 [Helicobacter canadensis MIT
           98-5491]
 gi|253827163|ref|ZP_04870048.1| putative inner membrane efflux pump component [Helicobacter
           canadensis MIT 98-5491]
 gi|253510569|gb|EES89228.1| putative inner membrane efflux pump component [Helicobacter
           canadensis MIT 98-5491]
          Length = 1041

 Score =  183 bits (464), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 86/687 (12%), Positives = 206/687 (29%), Gaps = 44/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   G L  +        ++ +P   P               +V++   
Sbjct: 9   RPVLAMVMSIIIVIAGGLSIM-----SLAVEEYPQVTPP-------------QVVVQATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L + +   EG+         +    I + F +    +     V  
Sbjct: 51  PGASAEVISSSVASVLENSINGVEGMIYMQSSSTSSGSLNINIYFTNETDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q V S L  + ++  +         + +     D         +       ++++   
Sbjct: 111 RVQAVMSSLPQEVQRQGVTVDKRSSTILAVYSLFSDSPAHDTTFIANYAAINILEELKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                     R    +     P +L +   T A++       N+      FG   +R   
Sbjct: 171 PGVGDAALFSRQEYSMRIWLSPDKLTKYNLTPAEVIALVQEQNSQFAAGFFGQEPVRKDL 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  +   +                +    +                 I       
Sbjct: 231 DFTYTVTTQGRFT-------------TPEEFGNILVRTNPDGSSLLLKDLARIELGAEDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     E        L           +          
Sbjct: 278 SVNAFYNGRPSVAFGLFLQPGANALSVAEGVAKRLEELSQSFPEGLQYAIPYDTTSFVNV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV++  +   +  ++   +I +++I T A + LLG ++ L ++
Sbjct: 338 SIKEVIKTFIEAIVLVIIVIYFFLQNFRATIIPVLAIPVSIIGTFAGMYLLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L IG+ VD  I+V E +    + +N SV  +         S +    +      + 
Sbjct: 398 FGLILAIGIVVDDAIIVIENVERLISEENLSVKDATIKAMEEIASPVVAIVLVLSAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI---NPLSR 530
           + F G   G   + FAIT+ +S++IS F A+++  A+ + I++  + K   I        
Sbjct: 458 IAFIGGFSGEIYKQFAITIVISVVISGFVALTLTPALCVSILKKTEPKPFWIVKKFNDFF 517

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            +L            R     + +   + ++       +  G+       + +++ +   
Sbjct: 518 AWLTHQFTDKVAHAIRRGVFYVILFAGLIAVTYGLFTRVPTGLVPAEDKGMLIVSMKLPP 577

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +    ++    + + +N    +  +    Y    S  +T       K     +    
Sbjct: 578 ATALSKTTDTASFMESTIRNNPNVEAVMALAGYDMLSSAVRTFGGTAFVKLKDWDLRKDE 637

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISA 677
            Q ++++   ++ +L++     VI + 
Sbjct: 638 SQKSQVLAQSLTGQLMQN-PNAVIFAL 663



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 77/203 (37%), Gaps = 6/203 (2%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
              +    +++++  P                  I++ I   I + + ++I I+   + +
Sbjct: 305 AEGVAKRLEELSQSFPEGLQYAIPYDTTSFVNVSIKEVIKTFIEAIVLVIIVIYFFLQNF 364

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              +  +  + + I  T     L G   NL  +  ++  IG  V+D ++V + +     +
Sbjct: 365 RATIIPVLAIPVSIIGTFAGMYLLGFSINLLTLFGLILAIGIVVDDAIIVIENV--ERLI 422

Query: 751 YTTSISFRDLIDKSINETLG---RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
              ++S +D   K++ E        V    A FI +  +  + G +   FAI +   +V+
Sbjct: 423 SEENLSVKDATIKAMEEIASPVVAIVLVLSAVFIPIAFIGGFSGEIYKQFAITIVISVVI 482

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +   ++ +   + + I       
Sbjct: 483 SGFVALTLTPALCVSILKKTEPK 505



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 6/163 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G++  I   + + + +  ++ +W   L  +T +   +   +    L G+  ++     +
Sbjct: 869  TGVIAFIFGLVFVFLILAAQYERWLMPLAVLTAVPFAVFGAILATWLRGLNNDIYFQIGL 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LI  S  + +++ +   +         +  D   ++        V TS+A  I VLP+
Sbjct: 929  VMLIALSAKNAILIIEFAME--AREKHGKNIYDSAVEAARLRFRPIVMTSLAFTIGVLPL 986

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            A+    G +   +    +  G++ A   + F       +   +
Sbjct: 987  AISSGAGAASRHAIGTGVIGGMLAATFIATFFIPLFYTYFARF 1029


>gi|116253528|ref|YP_769366.1| transmembrane efflux transporter [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258176|emb|CAK09277.1| putative transmembrane efflux transporter [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 1062

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 77/698 (11%), Positives = 193/698 (27%), Gaps = 58/698 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +   +G +        Q  + ++P   P               +V+    
Sbjct: 10  RPIFAAVISILFLVVGSIA-----YTQLPVSQYPEIAPPT-------------IVVRTSY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     +    +T++F      + +   V  
Sbjct: 52  PGADPQTIADTVSTPLEQQINGVEDMLYMSSYSSADGAMSLTITFKLGTDLDKVQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + T       +++            +  S     +  D +   
Sbjct: 112 RVSIALPRLPEEVQRLGVTTDKSSPDLMMVVHLLSPSHRYDQLYVSNYARNRIRDVLVRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     T+  +       N    G   G   +   +
Sbjct: 172 DGVGDVQIFGERQYSMRIWLDPEKLSAYGMTSDDVVSALRDQNVQVSGGKIGAPPVTGKN 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y V      S +                   I       R         I       
Sbjct: 232 AFEYTVRTDGRFSDVREFRY-------------VIVKSTTSGRLVQLQDVARIELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +   T      L   +     P     +          
Sbjct: 279 VTNSYLNNDPAVALGIFARPGTNALDTAHQVQTLMKDISQNFPPGLEYRIVYDTTEFISD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T A  A LV IV+ + +   +  ++   +I +++I T A+L   G +L + ++
Sbjct: 339 SITEVYRTIAEAAILVAIVVLVFLQSWRTAIIPIIAIPVSLIGTFAVLLAFGFSLNMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  +   +  +      + +   ++  +   V  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNLARGMTPKQASHVTMDEVGTAVVAISLVLIAVFVPT 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID---------- 524
            F     G   R FA+T+ ++  IS   ++++  A+   +++    ++            
Sbjct: 459 AFIPGISGQFYRQFAVTISVTTAISALNSLTLSPALAGILLKAHDHETKRMNVASRLGRG 518

Query: 525 ----INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-----YGIDF 575
                N             ++ + + + G+  +++  +C +   +  G            
Sbjct: 519 LADGFNHGFDRLSSGYSWTVRHLVSSWIGLTAAMVTFVCLLGATWYMGTKVPAGFIPTMD 578

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G   + +       L+   + ++ +     +         F         ++     V 
Sbjct: 579 QGYAIIVIQLPDGASLARTDAVVKQVGDIARTVPGVGNAVQFAGFSGATFTNASNAGVVF 638

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              K                       + +    I+ +
Sbjct: 639 VPFKSFAEREEGGENANKIIGELYGKLQSIQEAFIIAI 676



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 56/436 (12%), Positives = 132/436 (30%), Gaps = 20/436 (4%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
                   AG          +  +V    +    + +    + +      Y  +       
Sbjct: 614  VGNAVQFAGFSGATFTNASNAGVVFVPFKSFAEREEGGENA-NKIIGELYGKLQSIQEAF 672

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +IA       G G   GF + +       M   + + R MM      + +  +       
Sbjct: 673  IIAIPPPSVRGVGNSGGFKMQISDLENADMTRVLGLARQMMGAAATTEGLTGVFTTFSDA 732

Query: 531  FFLIPDCIAIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   I     R            +SI   +  +      G  Y +  +   Q  +  
Sbjct: 733  SPQYFLAIDRDKARFLNVPIPNIFNALSINLGVAYVNDFNAFGRVYQVRAQADRQYRMDR 792

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGE----KNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               + L V  +    + +G +            + + + +      +            K
Sbjct: 793  EDILALKVRSATGALVPLGTLMDIQDASGPALVQRYNMYVSVPLQGNPTPGTSTGDAIAK 852

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAI 697
            +  +      Q T     +++ +    G   + I +   + +++ +      W   L  I
Sbjct: 853  MEALAAKILPQGTTFEWTELAYQETHTGNTAIYIFALSVVFVFLALAAQYESWVLPLAII 912

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
              + L +   L   +L G++ N+     ++ LIG +  + +++ +  R   +      S 
Sbjct: 913  LIVPLAVLAALIGVSLRGMDNNVLTQIGLIVLIGLAAKNAILIVEFAR---QAEDEGKSP 969

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             +   ++ +  L   + T+ A    VLP+A+    G  +  S    +  G++      +F
Sbjct: 970  VEAAIEASHLRLRPILMTAFAFIFGVLPLAIATGPGAEMRQSLGTAVFSGMLGVTIFGLF 1029

Query: 815  IAAPILLFIYDWRAKN 830
            +     + +  WR K 
Sbjct: 1030 LTPVFYVVLRGWRRKR 1045



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 89/248 (35%), Gaps = 7/248 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              + R V L  V       Q    +    +     L        +++     ++ + K 
Sbjct: 256 STTSGRLVQLQDVARIELGAQDYVTNSYLNNDPAVALGIFARPGTNALDTAHQVQTLMKD 315

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           I++  P            +   + I +    +  +AI + I + +    W  A+  I  +
Sbjct: 316 ISQNFPPGLEYRIVYDTTEFISDSITEVYRTIAEAAILVAIVVLVFLQSWRTAIIPIIAI 375

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T      FG   N+  +  ++  IG  V+D +VV + + +N+      ++ +  
Sbjct: 376 PVSLIGTFAVLLAFGFSLNMLTLFGLVLAIGIVVDDAIVVVENVERNLA---RGMTPKQA 432

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              +++E     V  S+      +P A      G     FA+ ++    ++A +S+ ++ 
Sbjct: 433 SHVTMDEVGTAVVAISLVLIAVFVPTAFIPGISGQFYRQFAVTISVTTAISALNSLTLSP 492

Query: 818 PILLFIYD 825
            +   +  
Sbjct: 493 ALAGILLK 500


>gi|77361196|ref|YP_340771.1| acrB/acrD/acrF acriflavin resistance protein [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76876107|emb|CAI87329.1| putative acrB/acrD/acrF acriflavin resistance family protein
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 1032

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 78/668 (11%), Positives = 194/668 (29%), Gaps = 41/668 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   GL+           L  +P                         
Sbjct: 9   KRPVFAIVINLLLLTFGLVA-----FSMLPLREYPDIETPIV---------NISTEYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S ++       S R  ++ IT+ F   R  +  ++ V   +  
Sbjct: 55  SAEIIETKITQVIENRISGIEGIKSINSSSRNGRSNITIEFDIKRDIDAASNDVRERVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    +   +  +   E  IV    N +    ++++ S    R  +D++ + +   
Sbjct: 115 AADSLPEQVRPPEVSKSNSDESPIVWFVLNSE--TMNSMQLSDYAQRFIVDRLAVVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +   +     T + +       N               +     
Sbjct: 173 NVRIGGERKYAMKIWLNRQAMAARGITASDIEQTLRTENVELPAGEIESVDRDFTVRT-- 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A            +                ++    A      
Sbjct: 231 -----------------ARSYKDQRDFQNLVIKRGDDGYLVRLSEVADVQLEAADDESLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +A+ +    ++ A      ++              +      S + 
Sbjct: 274 RGNGRNMIGLGIVKQAKANTLTVVDNARAELEKIKRNLPEGTTIEDSYDSSIFIKESINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI  GLV++++F+ +   +  L+   ++ + ++ +   L  +G ++ L ++  +V
Sbjct: 334 VYSTLAISMGLVVLIIFIFLGNIRATLIPAVTVPVALVGSFMFLLAMGYSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I       +    +   G       I  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVMLENIHRRIELGEPPLLAAYRGAREVGFAIIATTLVLISVFVPLVFMD 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAM---MIFIIRYKKMKSIDINPLSRFFLIP 535
           G        FA+ +  ++  S  TA+++  A+   ++     +   S  +N       + 
Sbjct: 454 GRIGALFTEFAMAVSAAVFFSSITALTLSPALCSKVLKASEKESKFSQSMNRFFAKVELS 513

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              ++     R WG+ IS+L +      LFT   +     +      V+ + P   S   
Sbjct: 514 YRNSLASNMTRKWGLMISLLLAGFVSYSLFTQIPSELTPKEDRGTFFVMMSGPEGASYEN 573

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +     +I D      +  +   V ++           ++ M      +      +    
Sbjct: 574 NAANMSKIEDRLMPYSESGELSRVLVRVPGWGGSGGVAIVGMADWDKRQRSTWEIMDEIS 633

Query: 656 IVGPKISR 663
               +++ 
Sbjct: 634 TKLQEVTD 641



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 77/208 (37%), Gaps = 11/208 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IR 687
                 LE +K+ + E   +    ++ I   +   E+     + + +  + + I++  IR
Sbjct: 298 DNARAELEKIKRNLPEGTTIEDSYDSSIFIKESINEVYSTLAISMGLVVLIIFIFLGNIR 357

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                A+     L+      L      G   NL  + A++  IG  V+D +V+ + +   
Sbjct: 358 ATLIPAVTVPVALVGSFMFLLA----MGYSINLLTLLALVLAIGLVVDDAIVMLENIH-- 411

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +             +   E     + T++      +P+       G++   FA+ ++  
Sbjct: 412 -RRIELGEPPLLAAYRGAREVGFAIIATTLVLISVFVPLVFMDGRIGALFTEFAMAVSAA 470

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++ +++ ++  +   +     K ++
Sbjct: 471 VFFSSITALTLSPALCSKVLKASEKESK 498



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 52/120 (43%), Gaps = 4/120 (3%)

Query: 674 IISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           I++     + +  +F+ +      + T+ L +   +      G+  N+ +   ++ LIG 
Sbjct: 856 ILALTVTFLVLAAQFESFMHPFVIMLTVPLGLMGAMFGLWATGLTLNIYSQIGIVMLIGL 915

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           S  + +++ +      +L    + F + I ++  + L   + TS+   +S +P+ +  G 
Sbjct: 916 SAKNGILIVEF---TNQLRDKGVEFSEAILQAATQRLRPIIMTSLTTVMSAVPLVLASGP 972


>gi|58579561|ref|YP_197773.1| preprotein translocase subunit SecD [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418187|emb|CAI27391.1| Protein-export membrane protein secD [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 508

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 184/518 (35%), Positives = 297/518 (57%), Gaps = 23/518 (4%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             I+ +++C I + + LPNF+    L      +   +++LGLDL+GG +L+LE D  +++
Sbjct: 11  KPIVVTLLCTIAIYLVLPNFIDNKFL------ISNKKVNLGLDLQGGVYLLLEADFKEYL 64

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    DE+  FL  + I   S    ++K+ L   DS+  + I               
Sbjct: 65  KERMYGLYDEVNEFLLSKNIKYKSFDVYEDKLVLILKDSQDFDRIKSF------------ 112

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                KN+ ++  +  I +    +  + ++ + I  S+  IR+R+D+ G  E TI   G 
Sbjct: 113 ---NDKNVRISKQDVRIVMSFYDSYKENLLKNIITDSISNIRRRLDKSGTKEITINSHGK 169

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYLVED 245
            RI +Q+PG  D S+++ LLG TAK++FH +                L+D  GN Y +  
Sbjct: 170 DRISLQIPGIHDTSQIKMLLGKTAKLTFHLLENVTQISSINPLTTVLLKDVRGNTYPILR 229

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
           KVEISG  L    ++        VV+   +   A++F ++T++N  KP A+VLDG VLTA
Sbjct: 230 KVEISGDSLVD-VSSGINSLGNVVVNFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTA 288

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           PVI   I +G  +ISGNFT+E+A  L+ +L++G+LP  L ++EE+ +G+ LG++ I +G 
Sbjct: 289 PVIRDPILTGSGEISGNFTVESAKELSILLKSGALPAPLKVIEEKTIGSSLGAEYIKQGR 348

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A++  +V +  F+I  YG +GL+A   +  N+I  +A L+LL ATLTLP IAGI L +G
Sbjct: 349 LAMIVSVVAVSTFIIFFYGIFGLLAVIGLVFNIIFIVAALTLLQATLTLPGIAGITLTVG 408

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           ++VD+N+L+ ERI+EE R  + +  +++ GF  A STIFDSNIT LI   ++F  G G V
Sbjct: 409 MSVDANVLIFERIKEELRSKKKLRWAVESGFKNAMSTIFDSNITTLIVAAIMFVMGSGPV 468

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            GFAIT+ + IL SMF+AI++ + ++   IR+  +K +
Sbjct: 469 SGFAITLSIGILCSMFSAITLTKMLIDLYIRFFNLKVL 506



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 5/171 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  E I++G + +I+S +A+  +I   +   F L A+  L+ +I   +    L  
Sbjct: 334 TIGSSLGAEYIKQGRLAMIVSVVAVSTFIIFFYGI-FGLLAVIGLVFNIIFIVAALTLLQ 392

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A +   +G SV+  V++++R+++ ++        R  ++      +     +
Sbjct: 393 ATLTLPGIAGITLTVGMSVDANVLIFERIKEELRSKKK---LRWAVESGFKNAMSTIFDS 449

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++   I    M V G   +  FAI ++ GI+ +  S+I     +L+ +Y  
Sbjct: 450 NITTLIVAAIMFVMGSGPVSGFAITLSIGILCSMFSAI-TLTKMLIDLYIR 499


>gi|57239574|ref|YP_180710.1| preprotein translocase subunit SecD [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161653|emb|CAH58582.1| putative protein-export membrane protein SecD [Ehrlichia
           ruminantium str. Welgevonden]
          Length = 505

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 184/518 (35%), Positives = 297/518 (57%), Gaps = 23/518 (4%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             I+ +++C I + + LPNF+    L      +   +++LGLDL+GG +L+LE D  +++
Sbjct: 8   KPIVVTLLCTIAIYLVLPNFIDNKFL------ISNKKVNLGLDLQGGVYLLLEADFKEYL 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    DE+  FL  + I   S    ++K+ L   DS+  + I               
Sbjct: 62  KERMYGLYDEVNEFLLSKNIKYKSFDVYEDKLVLILKDSQDFDRIKSF------------ 109

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                KN+ ++  +  I +    +  + ++ + I  S+  IR+R+D+ G  E TI   G 
Sbjct: 110 ---NDKNVRISKQDVRIVMSFYDSYKENLLKNIITDSISNIRRRLDKSGTKEITINSHGK 166

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYLVED 245
            RI +Q+PG  D S+++ LLG TAK++FH +                L+D  GN Y +  
Sbjct: 167 DRISLQIPGIHDTSQIKMLLGKTAKLTFHLLENVTQISSINPLTTVLLKDVRGNTYPILR 226

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
           KVEISG  L    ++        VV+   +   A++F ++T++N  KP A+VLDG VLTA
Sbjct: 227 KVEISGDSLVD-VSSGINSLGNVVVNFKLNNAAAKKFAKITKENFNKPFAIVLDGVVLTA 285

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           PVI   I +G  +ISGNFT+E+A  L+ +L++G+LP  L ++EE+ +G+ LG++ I +G 
Sbjct: 286 PVIRDPILTGSGEISGNFTVESAKELSILLKSGALPAPLKVIEEKTIGSSLGAEYIKQGR 345

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A++  +V +  F+I  YG +GL+A   +  N+I  +A L+LL ATLTLP IAGI L +G
Sbjct: 346 LAMIVSVVAVSTFIIFFYGIFGLLAVIGLVFNIIFIVAALTLLQATLTLPGIAGITLTVG 405

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           ++VD+N+L+ ERI+EE R  + +  +++ GF  A STIFDSNIT LI   ++F  G G V
Sbjct: 406 MSVDANVLIFERIKEELRSKKKLRWAVESGFKNAMSTIFDSNITTLIVAAIMFVMGSGPV 465

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            GFAIT+ + IL SMF+AI++ + ++   IR+  +K +
Sbjct: 466 SGFAITLSIGILCSMFSAITLTKMLIDLYIRFFNLKVL 503



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 35/171 (20%), Positives = 78/171 (45%), Gaps = 5/171 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +G  +  E I++G + +I+S +A+  +I   +   F L A+  L+ +I   +    L  
Sbjct: 331 TIGSSLGAEYIKQGRLAMIVSVVAVSTFIIFFYGI-FGLLAVIGLVFNIIFIVAALTLLQ 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A +   +G SV+  V++++R+++ ++        R  ++      +     +
Sbjct: 390 ATLTLPGIAGITLTVGMSVDANVLIFERIKEELRSKKK---LRWAVESGFKNAMSTIFDS 446

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++   I    M V G   +  FAI ++ GI+ +  S+I     +L+ +Y  
Sbjct: 447 NITTLIVAAIMFVMGSGPVSGFAITLSIGILCSMFSAI-TLTKMLIDLYIR 496


>gi|297622035|ref|YP_003710172.1| multidrug-efflux transport protein [Waddlia chondrophila WSU
           86-1044]
 gi|297377336|gb|ADI39166.1| multidrug-efflux transport protein [Waddlia chondrophila WSU
           86-1044]
          Length = 1039

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 76/681 (11%), Positives = 176/681 (25%), Gaps = 43/681 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G +  +        + ++P   P+              + +    
Sbjct: 9   RPILSSVISIVIVLAGFMAMV-----NLPIAQYPEITPR-------------QVQVTTAY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   +        +           + + F  SR  +     V  
Sbjct: 51  PGASAEVVSNNVAAPIEQQVNGADDMLYMYSSCSSTGNMTLNVFFDLSRDPDLAQVDVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L     +  +         +++                       +D I   
Sbjct: 111 RVNLALPQLPEIVTRQGVSVKKVSTSFMMIIAVFSPDGRYDNTYVGNYANLYILDAIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ QL  T+  +       N        G     D  
Sbjct: 171 PGANQASVIGVPDYAMRLWVKPDRMAQLGITSQDIIRAVQAQNEQFAAGRVGQPPNMDEV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  +  ++                   + +     GA                  
Sbjct: 231 VMTFPVTTQGRLT------------TPQEFEEIILRAGSEGAAIVKLKDIGRAELGSKDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +     E    L   ++          +          
Sbjct: 279 NVTTHLNKMPATLIAVYQQPGSNALEVSEAVTSLLKEMKKDFPDGIDYKISMDTTQFVRA 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T    A LV +V+ + +   +  L+   ++ ++++     + L+G ++ + ++
Sbjct: 339 SIHEVVRTFFEAAVLVTLVVLIFLGTIRATLIPLVAVPISILGAFIGMILMGFSINMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L IG+ VD  I+V E +         S   +           +  + +  L   + 
Sbjct: 399 FGLILAIGVVVDDAIVVMENVERNMAAFKLSPREAARRAMVEVTGPVIATTLVVLAVFIP 458

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FAIT+ +S+  S   A+++  A+ + ++     K        R F 
Sbjct: 459 VGFMGGVTGELYKQFAITIAISVGFSSIVALTLSPALTVILLTPDMKKKGFFQWFDRKFD 518

Query: 534 IPDCIAI----QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
             +         F+  +    G+ I+  I S  +  T   ++  +   G  L V      
Sbjct: 519 WINEKYASLVEFFLNNKLISAGVFIVAIISSWWMFATISTSFVPEEDQGYLLSVYMLPDA 578

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                 + +          Q    +           G     T V  +      +     
Sbjct: 579 SSLDRTAEVGRQVEKIFLDQPGVSDVATGNGYSLLDGQLKTNTGVAFVALDDYEKRKSPD 638

Query: 650 TIQNTEIVGPKISRELIRKGI 670
                 +         IR+G+
Sbjct: 639 LQAEHIMRATGAKMMQIREGV 659



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 86/207 (41%), Gaps = 8/207 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A T +L+ +KK   + +      +T         E++R      ++  + +LI++   
Sbjct: 306 SEAVTSLLKEMKKDFPDGIDYKISMDTTQFVRASIHEVVRTFFEAAVLVTLVVLIFLG-- 363

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  + + I        L G   N+  +  ++  IG  V+D +VV + + +N
Sbjct: 364 -TIRATLIPLVAVPISILGAFIGMILMGFSINMLTLFGLILAIGVVVDDAIVVMENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
           M  +   +S R+   +++ E  G  + T++      +P+   G   G +   FAI +A  
Sbjct: 423 MAAF--KLSPREAARRAMVEVTGPVIATTLVVLAVFIPVGFMGGVTGELYKQFAITIAIS 480

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  ++  ++ ++  + + +     K  
Sbjct: 481 VGFSSIVALTLSPALTVILLTPDMKKK 507



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 59/168 (35%), Gaps = 7/168 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               V  I   + + + +  ++ +W      I  L   +   L    L GI  ++     +
Sbjct: 869  TSAVAFIFGMVMVFLILAAQYERWSMPFAVILALPFALFGALLAIWLRGISNDVYFQIGM 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LI  +  + +++ +     M+ Y    S  +    +    L     T+ +  +  +P+
Sbjct: 929  VALIALAAKNAILIVEFA---MQKYEEGFSAYESALIAAKLRLRPICMTAFSFILGCVPL 985

Query: 787  AVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A+  G+      S    +  G++ A   +IF      L +      + 
Sbjct: 986  AMATGASANSRHSIGTGVIGGMLGATVIAIFFIPLFYLLLQKISGDHK 1033


>gi|295084206|emb|CBK65729.1| The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile
           Efflux-1 (HAE1) Family [Bacteroides xylanisolvens XB1A]
          Length = 1051

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 78/683 (11%), Positives = 178/683 (26%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  S       +DQ+   
Sbjct: 111 RVSIAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSQDSVYNSLYLSNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-S 236
                          +    DP  +R    +  ++       N        G    +D +
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPQQVYQSIQSQNVEVSAGYIGQPIGQDNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  +                 +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRL-------------KSPEQFGDIIIRREQNGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L A         V         
Sbjct: 278 YSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAASFPKGVSYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I T A+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T+++    G   + FA+T+  S ++S F ++++  A+    +   K  +  I       
Sbjct: 458 PTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSNFFIYKGFNKA 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R     V    L  I  +  +         +  G     V   
Sbjct: 518 YDKTQGVYDKIVKWLLQRPGMALVSYGALTVIAVLLFMHWPSTFIPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  + +     S+                 G+         ++K       
Sbjct: 578 PAASLERTQAVGDKVNAILDSYPEVKNYIGISGFSIMGGGEQSNSATYFVVLKNWDERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+  
Sbjct: 638 KEHTAAAVVNRFNGEAYMTIQAA 660



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 49/542 (9%), Positives = 150/542 (27%), Gaps = 45/542 (8%)

Query: 329  GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                +         K     +      +       G   +  G + ++  ++ ++     
Sbjct: 502  KSKPSNFFIYKGFNKAYDKTQGVYDKIVKWLLQRPGMALVSYGALTVIAVLLFMHWPSTF 561

Query: 389  VADFSIFLNVILTL------------------ALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            + D      + +                    A+L           I+G  +  G    +
Sbjct: 562  IPDEDDGYFIAVVQLPPAASLERTQAVGDKVNAILDSYPEVKNYIGISGFSIMGGGEQSN 621

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +      ++  + +      +  +                + A V     G GA  G  +
Sbjct: 622  SATYFVVLKNWDERKGKEHTAAAVVNRFNGEAYMTIQAAEVFAMVPPAIPGLGASGGLQL 681

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +     +        + A++        + S+     +        I    ++     +
Sbjct: 682  QLEDRRNLGPTEMQQAINALLASYHSKPALGSVSSQYQANVPQYFLNIDRDKVQFMGIAL 741

Query: 551  GISILFSICSICLLFTHGL-----NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
                      +   + +        Y +  +   Q   + +  + LSV  +  E +    
Sbjct: 742  NDVFSTLGYYMGAAYVNDFVEFGRIYQVKIEARDQAQRVIDDVLKLSVPNAAGEMVPFSS 801

Query: 606  ISFQNFDGEKNFLVRLQ-----------YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +       ++ + R                  +    + +E + K+           + 
Sbjct: 802  FTKVEEQLGQDQINRYNMYSTASLTCNVAPGSSTGQAIQEVEALFKEQLGDEFGYEWTSV 861

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +         ++ +I++    L+       W   + A+  L + +   +    + 
Sbjct: 862  AYQETQAGNTTTIVLVMALIVAF---LVLAAQYESWTSPVAAVIGLPVALLGAMIGCLIM 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+  S  + +++ +  R          S R+   ++ +  L   + 
Sbjct: 919  GTPVSIYTQIGIILLVALSAKNGILIVEFARDFRAE---GNSIREAAFEAGHVRLRPILM 975

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA-SSSIFIAAPILLFIYDWRAKN 830
            TS A  + V+P+      G     +    + FG+ +    ++I+I       +   + + 
Sbjct: 976  TSFAFVLGVMPLLFATGAGAQSRIALGAAVVFGMAMNTLLATIYI-PNFYELMQKLQERF 1034

Query: 831  AR 832
            ++
Sbjct: 1035 SK 1036



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 78/245 (31%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S  N        +  Q           V   +++         + 
Sbjct: 267 DIARIDLGSASYSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAASFPKGVSY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  T    
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSN 507


>gi|148548081|ref|YP_001268183.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           putida F1]
 gi|71153757|sp|Q849R0|SEPB_PSEP1 RecName: Full=Probable efflux pump membrane transporter SepB
 gi|28631600|gb|AAO49779.1| periplasmic efflux protein SepB [Pseudomonas putida]
 gi|148512139|gb|ABQ78999.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida F1]
 gi|298682348|gb|ADI95409.1| TtgE [Pseudomonas putida]
          Length = 1046

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 178/687 (25%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G L      L +  + ++P+                  +V     
Sbjct: 8   RPIFAWVLAIIAMLAGALS-----LTKMPISQYPNIAAPAV---------SIQVVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L              +  I ++F      +    +V   LQ 
Sbjct: 54  AKTVQDTVVQVIEQQLNGLDGFRYMAAESASDGSMNIIVTFEQGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  L     +    ++             +    I  Q  D I       
Sbjct: 114 ATPRLPEEVQRQGLRVVKYQMNFFMVVGLVDKTGKMTNFDLGNLIASQLQDPISRINGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP +L     T   ++      N        G    R       
Sbjct: 174 DFLLFGSP-YAMRIWLDPGKLNSYQLTPGDVAQAIREQNVQVSSGQLGGLPTRSGVQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  ++                +    +   +    +        +           
Sbjct: 233 TVVGKTRMT-------------TPAEFEEILVKVKADGSQVRVKDLGRVVLASENFAISA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   T++         +A        I           S   
Sbjct: 280 KYRGQDSAGLGLRLASGGNLLETVKAVKAELEKQKAYLPEGVEVIYPYDTSPVVEASIDS 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   ++ + ++   ALL   G ++ + ++  +V
Sbjct: 340 VVHTILEAVVLVFLVMFLFLQSLRATIIPTLAVPVVLLAAFALLPYFGISINVLTMYAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERLMHDEGLSPLEATRKSMGQISGALVGIGMVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      + FA+T+ + + +S+  A+    A+   I           +       + + 
Sbjct: 460 GGSAGIIYKQFAVTIVICMSLSVLVALIFTPALCATILKAPENDAHHEKKGFFGWFNRSF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +         + +  +++ +                + +G +   V    
Sbjct: 520 DRNSARFERGVGGILKHRGRYLLIFALITAGTGYLFTQIPKAFLPSEDQGLMMTEVRMPL 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     L+ ++   +  +    +    V      G       VL ++K        
Sbjct: 580 NASAERTEVVLQEVKDYLLKEEGQLVDHVMTVNGFNFAGRGQNSGLVLVVLKDWAARQAA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
              + +           +    ++  +
Sbjct: 640 GEDVLSVAERANARFARIKDATVMAFV 666



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 76/197 (38%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A    LE  K  + E V +    +T  V       ++   +  V++  + M +++ 
Sbjct: 301 ETVKAVKAELEKQKAYLPEGVEVIYPYDTSPVVEASIDSVVHTILEAVVLVFLVMFLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +     + + +         FGI  N+  + A++  IG  V+D +VV + + 
Sbjct: 361 ---SLRATIIPTLAVPVVLLAAFALLPYFGISINVLTMYAMVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
               ++   +S  +   KS+ +  G  V   M      +PMA +GGS   +   FA+ + 
Sbjct: 417 -ERLMHDEGLSPLEATRKSMGQISGALVGIGMVLSAVFVPMAFFGGSAGIIYKQFAVTIV 475

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++     +
Sbjct: 476 ICMSLSVLVALIFTPAL 492



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/396 (11%), Positives = 124/396 (31%), Gaps = 17/396 (4%)

Query: 452  LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +     RA +         ++A V       G   GF + +  ++ +   + ++     +
Sbjct: 643  VLSVAERANARFARIKDATVMAFVPPAVLEMGNAMGFDLYLQDNLGLGHESLMAARNQFL 702

Query: 512  IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
                    ++++  N           I  +  RA    +         +   ++ +    
Sbjct: 703  ELAAENPSLRAVRPNGKDDEPQFQVKIDDEKARALQVSIASINDTMSAAWGSMYVNDFID 762

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                K     GV ++R       +  + +     + F  F   +      + +    ++ 
Sbjct: 763  LGRVKRVYIQGVDSSRIAPEDFDKWYVRNALGEMVPFSAFATGEWIHGSPKLERYGGISA 822

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPK---------ISRELIRKGIVGVIISAIAMLI 682
              +L       +    +  I       P             E+       ++ +   +++
Sbjct: 823  VNILGEPAPGFSTGDAMIAIAQIMQQLPSGIGLSYNGLSYEEIRTGDQAPMLYALTVLIV 882

Query: 683  YI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            ++    +   W   +  I  + L I   +      G+E ++     ++T +G S  + ++
Sbjct: 883  FLCLAALYESWSVPMSVILVVPLGIFGAVLATLWRGLEADVYFQVGLMTTVGLSAKNAIL 942

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGS 796
            + +  ++  +     +       ++    L   + TS+A    VLPMA     G     S
Sbjct: 943  IIEFAKELYEKE--GVPLVKAAIEAARLRLRPIIMTSLAFTFGVLPMARATGAGAGSQHS 1000

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             A  +  G++ A   ++F      + +     +N +
Sbjct: 1001 IATGVVGGMITATVLAVFFVPLFYVVVVKVFERNKK 1036


>gi|329904595|ref|ZP_08273883.1| RND efflux system, inner membrane transporter CmeB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327547896|gb|EGF32648.1| RND efflux system, inner membrane transporter CmeB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 1050

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 65/506 (12%), Positives = 140/506 (27%), Gaps = 38/506 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G L           + ++PS  P               +V+    
Sbjct: 8   RPVFAWMLALFIVLAGALSI-----TTLPVSQYPSIAPP-------------SVVIAATY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +   EG+     +   N   +IT+SF         A  V  
Sbjct: 50  PGASAQLLDDSVTSLIEQEMNGAEGLKYMESQSQANGQVRITVSFEPGTDPNLAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L     +  +  T  +   ++ +  +     +  I     I R  +++I   
Sbjct: 110 RLKRVEARLPQVVTQQGVQVTKSRSHILLFASLSSTDGKTDPIALGDYISRNILNEIKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     TTA ++      N +      G      S 
Sbjct: 170 PGVGEAQLFGT-EQAMRIWLDPAKLIGYKLTTADVTSAVRAQNATVTAGTLGELPSPTSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                    + ++G               +    +                 I       
Sbjct: 229 QYSA----PIIVTGQ---------LETPEEFGKVVLRANPDGSTVLLRDVARIDIGGQAY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L     P     +          
Sbjct: 276 GTSARLNGKPTAAIAVQLSPSGNALGTATAVIAKMDELSKFFPPGLRYDIPYNTSTFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++    + + ++ T  +++L G ++ + ++
Sbjct: 336 SIEEVVKTLLEAIVLVFLVMYLFLQNFRATIIPTIVVPIALMGTFGMMALFGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLSARDATRKAMGQITGAIIGITLVLIAVFLP 455

Query: 477 LFFFGGGAVRGFAITMGLSILISMFT 502
           +  FGG     +       +    F+
Sbjct: 456 MALFGGAVGAIYRQFSLSMVSSMAFS 481



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 83/214 (38%), Gaps = 6/214 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q    S +        +       G+++     +     ++++  P     
Sbjct: 264 DVARIDIGGQAYGTSARLNGKPTAAIAVQLSPSGNALGTATAVIAKMDELSKFFPPGLRY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +         +  I + +  ++ + + + + +++  + +   +     + + +  T G  
Sbjct: 324 DIPYNTSTFVKISIEEVVKTLLEAIVLVFLVMYLFLQNFRATIIPTIVVPIALMGTFGMM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           ALFG   N+  +  ++  IG  V+D +VV + +     +    +S RD   K++ +  G 
Sbjct: 384 ALFGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMSEEGLSARDATRKAMGQITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
            +  ++      LPMA++GG+V      F++ M 
Sbjct: 442 IIGITLVLIAVFLPMALFGGAVGAIYRQFSLSMV 475



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/190 (12%), Positives = 71/190 (37%), Gaps = 8/190 (4%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY 683
             GD+       E + +  + +  L      E  G  +  +        +  +S + + + 
Sbjct: 823  SGDAAPGRSSGEALTEMESLMSQLPEGFGYEWTGQSLEEKTSGSQAPALFALSLLIVFMV 882

Query: 684  IWIRFKWY-FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +   ++     +  +  + L +   L   ++ G+  ++     ++  IG S  + +++ +
Sbjct: 883  LAALYESTTIPIAVLLVVPLGVLGALLGASIRGLPNDVYFKVGLIATIGLSAKNAILIIE 942

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +    L     +  +   ++++      + TS+A  + VLP+ +    G +   +   
Sbjct: 943  FAKD---LQAQGKTVIEATLEAVHLRFRPIIMTSLAFILGVLPLVISTGAGSAGQRAIGT 999

Query: 800  PMAFGIVVAA 809
             +  G++ A 
Sbjct: 1000 GVMGGMITAT 1009


>gi|317014977|gb|ADU82413.1| preprotein translocase subunit SecF [Helicobacter pylori
           Gambia94/24]
          Length = 323

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVIVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEVLI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVIALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNATQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|312882173|ref|ZP_07741921.1| AcrB/AcrD/AcrF family protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370135|gb|EFP97639.1| AcrB/AcrD/AcrF family protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 1035

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 84/692 (12%), Positives = 192/692 (27%), Gaps = 44/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L        +  + ++PS  P   I                  
Sbjct: 8   KPIFAWVIAILIMLCGVLAIF-----KLPVSQYPSIAPSTII---------ISTRYNGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        S     N  IT++F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQSLTGIDHLRYFSSSSDNTGNVSITVTFNSDVDPDIAQVQVQNKLQS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L ++ ++  +         ++++            + S  +I    + +       
Sbjct: 114 VLPLLPLEVQQQGVKVNKSSANILLIAGFYSKDGSLDKNDISDFMISNISEPLSRVNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L +   T++ +       N        G     +      
Sbjct: 174 EIQIFGAP-YAMRIWLDPLKLVKYGLTSSDIIKALKEQNAQVSAGQLGANPSNE------ 226

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   + ++ + +  +     H+    I   +      F      +       +   
Sbjct: 227 --------TELNASISAQSRLKTAHEFQEIIIKSDQVGASVFLKDVARVELGADDYIMTN 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T          LR         +           S   
Sbjct: 279 FYNQYPSAALGVKLAPGANALQTSAAVKQKIDELRPFFPDGLDVVYPYDTSPFVGKSIEG 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  ++F+ +   +  L+   +I + ++ T A+L  LG ++   ++  +V
Sbjct: 339 VVHTLFEAVILVFFIMFLFLQNFRATLIPTIAIPVVLLGTFAVLFALGLSVNTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +    S   +      +  S +    +T     V + F 
Sbjct: 399 LAIGLLVDDAIVVVENVERVMHEDGLSPREATHKSMGQISSALVGIALTLSAVFVPMAFM 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F++T+  ++ +S   A+ +  A+   +++  K +         F    D 
Sbjct: 459 SGSTGVIYRQFSVTIITAMALSAVVALVLTPALCATMLKPIKNEKQANGIFRLFNRYFDT 518

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNY--------GIDFKGGIQLGVLANRPV 589
            A  + ++    +   + F    + L                  + +G +   V+     
Sbjct: 519 SAKGYEKSVALMLKRPLRFMFLFLILTGLGAWYAATLPTSFLPDEDQGILFAQVILPTNS 578

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                   +E L       ++   E  F+       G           +K          
Sbjct: 579 TQKQTEQAMEKLSKYFREEESELVENVFIASGFSFAGTGNNMGVAFIGLKDWKYRQGAGQ 638

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
            + +           +     V V  +  A+L
Sbjct: 639 DVNSVVKRSMAFFASMREA--VAVSFAPPAVL 668



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 76/197 (38%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             S A  + ++ ++    + + +    +T     K    ++      VI+    M +++ 
Sbjct: 300 QTSAAVKQKIDELRPFFPDGLDVVYPYDTSPFVGKSIEGVVHTLFEAVILVFFIMFLFLQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T       G+  N   + A++  IG  V+D +VV + + 
Sbjct: 360 ---NFRATLIPTIAIPVVLLGTFAVLFALGLSVNTLTMFAMVLAIGLLVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               ++   +S R+   KS+ +     V  ++      +PMA   GS       F++ + 
Sbjct: 416 -ERVMHEDGLSPREATHKSMGQISSALVGIALTLSAVFVPMAFMSGSTGVIYRQFSVTII 474

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++A  ++ +   +
Sbjct: 475 TAMALSAVVALVLTPAL 491



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 85/251 (33%), Gaps = 13/251 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 + L+       +++   +   N     N    +        A   +  + K    
Sbjct: 789  THGEMIPLNSFIQGHWTIESPRLERFNAVSAVNIQGNVAPGYSTGEAMEYIEGLKKSLPE 848

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                     + E         L+        +S + + + +   ++ W   L  I  + L
Sbjct: 849  GFDITWNGLSYEERLAGSQAPLLY------ALSILVVFLVLAALYESWSVPLAVILVVPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I  TL    L G+  ++     +LT +G +  + +++ +  ++    YT  +S  D   
Sbjct: 903  GILGTLIAVGLRGMSNDIFFQVGLLTTVGLATKNAILIVEFAKE---QYTQGLSLTDATL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             ++   +   + TS+A  + VLP+A+    G     +    +  G++ +    IF     
Sbjct: 960  NAVRTRIRPIIMTSLAFGLGVLPLAMSHGVGSGAKTALGTAVLGGMLSSTFLGIFFIPVF 1019

Query: 820  LLFIYDWRAKN 830
             + +  +  + 
Sbjct: 1020 FIVVMTFATRK 1030



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 62/528 (11%), Positives = 150/528 (28%), Gaps = 35/528 (6%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            ++     + L+ ++  +G   A        + D     +    I         ++   + 
Sbjct: 531  LKRPLRFMFLFLILTGLGAWYAA-TLPTSFLPDEDQGILFAQVILP-------TNST-QK 581

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI-QNKITLSFADSRF---KENIADKVT 116
              +  +    + + +E    ++   I          N + ++F   +    ++     V 
Sbjct: 582  QTEQAMEKLSKYFREEESELVENVFIASGFSFAGTGNNMGVAFIGLKDWKYRQGAGQDVN 641

Query: 117  LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
              ++   +      ++ + V+     +  + +    D  +          +    D++  
Sbjct: 642  SVVKRSMAFF-ASMREAVAVSFAPPAVLELGTSGGFDFYLQDRGNHGHRALLNARDKLIQ 700

Query: 177  SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
              +   +L   R   Q         +         +S   V    S       V    D 
Sbjct: 701  LANKNPKLVGMRANGQEDAPSYQLDIDNSKIRAFNLSVDDVNGIISSAFGSNYVNDFVDR 760

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                     KV I G      T N     +          + +      T ++       
Sbjct: 761  GRI-----KKVYIQGDEDYRLTPNNIGMWYAKNTHGEMIPLNSFIQGHWTIESPRLERFN 815

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
             +               + +  ++  ++   A      L+              +    L
Sbjct: 816  AVSA------------VNIQGNVAPGYSTGEAMEYIEGLKKSLPEGFDITWNGLSYEERL 863

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
               S      A+   +V +VL  +       L     + L ++ TL  + L G +  +  
Sbjct: 864  AG-SQAPLLYALSILVVFLVLAALYESWSVPLAVILVVPLGILGTLIAVGLRGMSNDIFF 922

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              G++  +GLA  + IL+ E  +E+  +  S+  +           I  +++   +  + 
Sbjct: 923  QVGLLTTVGLATKNAILIVEFAKEQYTQGLSLTDATLNAVRTRIRPIIMTSLAFGLGVLP 982

Query: 477  LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            L      G GA       +   +L S F  I  +    I ++ +   K
Sbjct: 983  LAMSHGVGSGAKTALGTAVLGGMLSSTFLGIFFIPVFFIVVMTFATRK 1030


>gi|297380716|gb|ADI35603.1| protein-export membrane protein SecF [Helicobacter pylori v225d]
          Length = 323

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILNFMRYSNYGVVVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEMLI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ +A+++Y+  R++W FAL ++  L  D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALMAIMVYVSFRYEWRFALASVVALAHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|118470626|ref|YP_887281.1| preprotein translocase subunit SecF [Mycobacterium smegmatis str.
           MC2 155]
 gi|118171913|gb|ABK72809.1| protein-export membrane protein SecF [Mycobacterium smegmatis str.
           MC2 155]
          Length = 422

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 137/322 (42%), Gaps = 15/322 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     A + +  R     +S +  + S+  +   G  +GIDF+GG ++ + A
Sbjct: 32  KHGFFVRLYTGTGAFEVIGKRKLWYAVSGIIVVISLASILLRGFTFGIDFEGGTKVSLPA 91

Query: 586 ---NRPVDLSVVRSNLESLQIGDISFQNFDGEK-----NFLVRLQYQPGDSVAQTRVLEM 637
                 + +  V                  G                      +  + + 
Sbjct: 92  AGAQGTITVQQVEDVFNQTLGRSPESVVTVGSGGSATLQIRAETLTNEETEELRNALFDT 151

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           ++ K  +  P   + +   V      ++ +K ++ +++  +   IYI  R++ Y A+ A+
Sbjct: 152 LQPKGADGQPSKQVISDSAVSETWGGQITKKMVIALVVFLVLAAIYITWRYERYMAISAL 211

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSI 755
            T++ DI  T G ++L G E     V  +LT++G+S+ D V+V+D++ +N     +TT  
Sbjct: 212 ATMVFDIVVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFEHTTRR 271

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAAS 810
           +F +  + ++N+T  RS+ TS+ + + ++ +      + G   +   A+    G++V   
Sbjct: 272 TFAEQANLAVNQTFMRSINTSLISVLPIVALMVVAVWLLGVGTLMDLALVQLVGVIVGTY 331

Query: 811 SSIFIAAPILLFIYDWRAKNAR 832
           SSI+ A P+L+ + +      +
Sbjct: 332 SSIYFATPLLVSLRERTELVRK 353


>gi|113970672|ref|YP_734465.1| acriflavin resistance protein [Shewanella sp. MR-4]
 gi|113885356|gb|ABI39408.1| acriflavin resistance protein [Shewanella sp. MR-4]
          Length = 1031

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 71/629 (11%), Positives = 176/629 (27%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISLLLVAFGLVA-----FDKLPLREYPNIDPPIV---------SIETNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++++TL F  SR  E+ A+ V   + G
Sbjct: 55  SAAVVESRITQLIEDRISGVEGIRHVSSSSSDGRSQVTLEFDISRNIEDAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +      +  I+      D      +E +    R   D++ + +   
Sbjct: 115 LLDNLPEEADPPEVQKANGGDEVIMWLNLVSD--QMTTLELTDYTRRYLSDRLSVVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 MIRIGGGKVYAMRVWLDRQALASRSLTVADVEAALRAENVELPAGSLESKERHFTVRLE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RSYRTAEDFANLVISQGEDGYLVKLGDVAKVEIGSEEERIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +          L   +               +      S   
Sbjct: 274 RGNKEAMIGLGVSKQSTANTLEVARAVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFTAMVLVIIVIYLFLGSVRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+ M  +++ S   A+++   M   +          ++ +D         
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSIVALTLSPMMCSKLLKPASQDSWLVRKVDSIMTGISRG 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     R     + + I      +            + +G + L V   +      
Sbjct: 514 YQSSLEKAMARPVLMSILVLIALGSSVLLAQKVPQEFAPQEDRGSLFLMVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           + S +  ++   +   +    K  L+R  
Sbjct: 574 IESYMNEVENRLMPLVDSGDIKRLLIRAP 602



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 74/205 (36%), Gaps = 13/205 (6%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   +++ +   +   + +    ++ +      +E+ +     +++  I + +++     
Sbjct: 299 AVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T       G   NL  + A++  IG  V+D +V+ + +    +
Sbjct: 356 VRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S          E     + T++      +P+    G    +   FA+ M+  ++
Sbjct: 413 RIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVI 472

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
               SSI +A  +   +     K A
Sbjct: 473 ---FSSI-VALTLSPMMCSKLLKPA 493



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L      G   N+ +   ++ L+G 
Sbjct: 860  LLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGALIGLWFTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++  + L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVDFDRAIIQASCQRLRPILMTGITTAAGAVPLVLAAGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +  GI++A   +IF+          
Sbjct: 977  GAETRFVIGVVVLSGIMLATLFTIFVIPTAYGLFAR 1012


>gi|107028581|ref|YP_625676.1| hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|116686583|ref|YP_839830.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia HI2424]
 gi|105897745|gb|ABF80703.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|116652298|gb|ABK12937.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia HI2424]
          Length = 1063

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 67/574 (11%), Positives = 157/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+         +  + ++P+  P               + ++ + 
Sbjct: 8   RPIFAWVIAIVLMLAGVASIF-----KMPIAQYPTIAPPT-------------IQIQANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F+     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFSPGTNPDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +  T      ++    N +       + +  +    +D +   
Sbjct: 110 KLSLATPNLPQVVQQLGMQVTKSSSNWLMWFAFNSEDGRMSKEDLTNYVASHVLDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q L        +    DP +L     T   ++      N    G   G    +   
Sbjct: 170 NGVGQTLLLGSQ-FSMRIWLDPIKLTNYSLTPTDVTAAITQQNVQIAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +                
Sbjct: 229 VLQATITESTLL-------------RTPEQFGNILLKVNQDGSQVRLKDVGRAALGSENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L        +             
Sbjct: 276 TFDTKYMGQPTAGLGIQLATGANALATANALRAKIDELSKYFPHGLVVHYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++ L G ++   S+
Sbjct: 336 SIEEVVKTLIEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMGLAGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +     S+    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMSQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I+         
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALVLTPALCATI-----LKPIEKGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F R+R             S   L  +
Sbjct: 511 FFGWFNRTFDRSRDRYTSGVNHVIKRSGRWLVIY 544



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G  +  ++ Q   G S  Q                  +         +   +    
Sbjct: 816  ERYNGVSSIEIQGQAAEGKSTGQAMAAMEALASKLPEGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVVGALLATMLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+ ++        R  I+ +    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE-LQAGGNMGPVRAAIEAA-RLRLRPILMTSLAFMLGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 79/220 (35%), Gaps = 6/220 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        L        +++A    L     ++++  
Sbjct: 258 SQVRLKDVGRAALGSENYTFDTKYMGQPTAGLGIQLATGANALATANALRAKIDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   + +         R  I + +  +I   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVHYPYDTTPFVRLSIEEVVKTLIEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMGLAGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
           ++  G  V  ++      +P+A  GGSV      F++ + 
Sbjct: 436 SQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIV 475



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 53/528 (10%), Positives = 144/528 (27%), Gaps = 56/528 (10%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WLVI  ++   +G++ A      +      P              +G   ++++  
Sbjct: 536  RSGRWLVIYLAVFLAVGVMFA------RLPKSFLPDED-----------QGYMFMIVQ-T 577

Query: 62   EDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQIQ----------NKITLSFADSRFKE 109
                         D + ++L   ++ +                     + +       ++
Sbjct: 578  PSGSTQETTGKTLDNINTYLTTAEKDVVDSVFTVNGFSFAGRGQNAGLVFVKLKPYEQRQ 637

Query: 110  NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA--IEQSMEII 167
                KV   +    +  +      ++         +  +     ++  +A    +++   
Sbjct: 638  RSDQKVQALIGRTFAHYSTYKDGMVIPFNPPSIPELGTAAGFDFELTDNAGLGHEALMAA 697

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
            R ++  +   +  +  +  + +      + D  R +        ++   +    S     
Sbjct: 698  RGQLLGLAAKDPALALVRPNGLNDTPQYKVDIDREKANALG---VTAAAIDQTFSIAWAS 754

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              V    D+DG          I  +++              +  +     G   F   + 
Sbjct: 755  QYVNNFLDTDG---------RIKKVYVQSDAPFRMTPEDMNIWYVRNSAGGMVPFSAFST 805

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
             +       +     +++  I       + Q +   +   A      L +          
Sbjct: 806  GHWIYGSPKLERYNGVSSIEI-------QGQAAEGKSTGQAMAAMEALASKLPEGIGYSW 858

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
               +        S      AI   +V + L  +             + L V+  L    L
Sbjct: 859  TGLSFQEIQSG-SQAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVVGALLATML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDS 466
             G    +    G++  +GL+  + IL+ E  RE           +           I  +
Sbjct: 918  RGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQAGGNMGPVRAAIEAARLRLRPILMT 977

Query: 467  NITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            ++  ++  + L      G  +       +   ++ + F AI ++    
Sbjct: 978  SLAFMLGVLPLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|257055541|ref|YP_003133373.1| protein translocase subunit secF [Saccharomonospora viridis DSM
           43017]
 gi|256585413|gb|ACU96546.1| protein translocase subunit secF [Saccharomonospora viridis DSM
           43017]
          Length = 414

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 64/324 (19%), Positives = 134/324 (41%), Gaps = 15/324 (4%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L     A   +  R           +     +   G N+GI F+GG Q+ +
Sbjct: 16  PAKQSVFQRLYTGTGAFDIVGHRRKWFLAFGALVLVCFVSMGLKGFNFGIAFEGGTQIQL 75

Query: 584 LANR----PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            A                 ++L       Q     +   ++L+ +        +V + + 
Sbjct: 76  PAQGANGTITTEEAQEVFSDTLGRNPAETQQVGTGEAATIQLRSETLTPAEVAQVKQALF 135

Query: 640 KKITEIVPLSTIQ----NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            ++  +           +   V      E+ R+ ++ + +  + + +++ + F+ + AL 
Sbjct: 136 TELQPLGTDGQPSERAISDSRVSASWGGEISRQALIALAVFLVLVAVFLILYFEKWMALA 195

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTT 753
           A+  L+ D+  T G ++L G +        +LT++GYS+ D VVV+D++++N +  L  T
Sbjct: 196 ALVALLHDVVVTAGVYSLVGFQVTPATAIGLLTILGYSLYDTVVVFDKVKENTRGILNLT 255

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVA 808
             ++ +  + ++N+TL RS+ TS+ A + VL M V      G   +   A+ +  G+V  
Sbjct: 256 RRTYAEAANLAVNQTLMRSINTSVIALLPVLGMLVIGYLLLGSGTLQDLALVLITGMVAG 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
             SS+ +A P+L+       K  +
Sbjct: 316 TFSSVCLATPLLVSFKMRDPKYQK 339


>gi|162452757|ref|YP_001615124.1| protein-export membrane protein SecF [Sorangium cellulosum 'So ce
           56']
 gi|161163339|emb|CAN94644.1| protein-export membrane protein SecF [Sorangium cellulosum 'So ce
           56']
          Length = 413

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 69/250 (27%), Positives = 124/250 (49%), Gaps = 1/250 (0%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           GG ++    +   DL  ++  +E ++  ++     +         + +        ++++
Sbjct: 140 GGDKISTRYDTAPDLEGIKKQIEGIEGVELRAGANNPLIVSERDHKVELHLKSKGDQLMD 199

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +++ +            E +GPK   +L    I  V I+   ++ YI  RF   FA G 
Sbjct: 200 GLREHLGADKVPEQALRVEWIGPKAGAQLRDAAIKSVAITIFFIMAYIAFRFDIRFAPGG 259

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           I  L+ D+   LG   +   E  L+ VAA+LT++GYS+ D VVVYDR+R+N+  +   +S
Sbjct: 260 IVALVHDVGIALGAMVITQREITLSTVAALLTIVGYSITDTVVVYDRIRENLGKH-RDMS 318

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           F  +I+ S++E LGR++  S+   +S++    +G  VI  FA  +  GI V   SSI++A
Sbjct: 319 FAAVINFSLSEMLGRTILVSLTTLLSLVMFLFYGTGVIKDFAFTLVVGIAVGTYSSIYVA 378

Query: 817 APILLFIYDW 826
           AP+  +I   
Sbjct: 379 APLTEWIDRR 388


>gi|255532840|ref|YP_003093212.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Pedobacter heparinus DSM 2366]
 gi|255345824|gb|ACU05150.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pedobacter heparinus DSM 2366]
          Length = 1055

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 67/546 (12%), Positives = 155/546 (28%), Gaps = 41/546 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I  +G+L A      Q  + +FPS  P               + +  + 
Sbjct: 8   RPVLSIVISLIITFLGVLAA-----TQLPVTQFPSISPPK-------------VNITAEY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +     L   +    G+   +     +    I + F         +  +  
Sbjct: 50  PGANGELMIKSVIIPLERAINGVPGMKYMASDAGNDGEATIQVIFNLGTDPNQASVNIQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V +KL     +  +  T E+   ++                        + ++   
Sbjct: 110 RVASVINKLPPLVVREGVKITREESNMLMYINLYSKDPNMDQKFLFNYADINVLSELKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P R+     +  ++       +        G    + S 
Sbjct: 170 DGVGVADILGNREYAMRIWLKPDRMLAYKISADEVLKALDEQSLEASPGKTGESSGKRSQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y+++     S                     I                ++    +  
Sbjct: 230 AFEYVLKYPGRFS-------------TKEGYENIILRSSNKGELLHLKDVADVEFGSSYY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADL 356
                L                + +  I+     L  +            +         
Sbjct: 277 DLYSNLNGKPSAAITVKQSYGSNASQVIKDIKAKLKEIKSTSFPKGMDYEISYDVSKFLD 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F+ +   +  L+   ++ +++I T   +  LG TL L +
Sbjct: 337 ASIEKVIHTLVEAFILVGLVVFLFLGDWRSTLIPAIAVPVSLIGTFLFMQYLGITLNLIT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD+ I+V E +  +  +   S   + +         I           +
Sbjct: 397 LFALVLAIGIVVDNAIVVIEAVHAKMEEKNLSPLKATEEAMHEISGAIIAITFVMAAVFI 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      R F+ITM  SI++S   A+++  A+   +++    K      L++  
Sbjct: 457 PVAFMSGPVGIFYRQFSITMATSIILSGVVALTLTPALCAMMLKNNHGKPKKKTWLNKML 516

Query: 533 LIPDCI 538
              +  
Sbjct: 517 DGFNNW 522



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 104/266 (39%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G   + + ++   +L  ++   +            +        +  +       ++V+
Sbjct: 245 EGYENIILRSSNKGELLHLKDVADVEFGSSYYDLYSNLNGKPSAAITVKQSYGSNASQVI 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISREL----IRKGIVGVIISAIAMLIYIWIRF-KW 690
           + +K K+ EI   S  +  +        +     I K I  ++ + I + + +++    W
Sbjct: 305 KDIKAKLKEIKSTSFPKGMDYEISYDVSKFLDASIEKVIHTLVEAFILVGLVVFLFLGDW 364

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     + + +  T  F    GI  NL  + A++  IG  V++ +VV + +    K+
Sbjct: 365 RSTLIPAIAVPVSLIGTFLFMQYLGITLNLITLFALVLAIGIVVDNAIVVIEAVH--AKM 422

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
              ++S     +++++E  G  +  +       +P+A   G V      F+I MA  I++
Sbjct: 423 EEKNLSPLKATEEAMHEISGAIIAITFVMAAVFIPVAFMSGPVGIFYRQFSITMATSIIL 482

Query: 808 AASSSIFIAAPI-LLFIYDWRAKNAR 832
           +   ++ +   +  + + +   K  +
Sbjct: 483 SGVVALTLTPALCAMMLKNNHGKPKK 508



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 78/250 (31%), Gaps = 10/250 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +               +    +   S A           + E+  
Sbjct: 790  YVKNDHEEMVPFSAFMKIEKVYGLSEITRHNMYNASEISGSAAAGYSSGAAIDAVNEVAK 849

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWI---RFKWYFALGAITTLILD 703
             S  +   I    IS++ + +G   V I  I  + +Y+ +      +      I +L   
Sbjct: 850  TSLPRGFGIDWAGISKDEVGRGNQAVYIFLICLVFVYMLLAAQYESFILPFPVILSLPAG 909

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I        LFG+E N+ A  A++ LIG    + V++ +     ++ +    S      +
Sbjct: 910  IFGAFLLLKLFGLENNIYAQVAMVMLIGLLGKNAVLIIEFA---VQKHRAGSSVLKAAIE 966

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              +      + TS A    ++P+      G +   +     A G++      + I   + 
Sbjct: 967  GASVRFRPILMTSFAFIAGLIPLVFASGPGATGNRTIGSAAAGGMLFGTVFGVIIIPGLY 1026

Query: 821  LFIYDWRAKN 830
                    K+
Sbjct: 1027 YIFGKISEKH 1036


>gi|325998410|gb|ADZ50618.1| Protein-export membrane protein [Helicobacter pylori 2017]
          Length = 323

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKRTRILSFMRYSNYGVIVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNATQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|126657740|ref|ZP_01728894.1| protein export protein SecF [Cyanothece sp. CCY0110]
 gi|126620957|gb|EAZ91672.1| protein export protein SecF [Cyanothece sp. CCY0110]
          Length = 303

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 75/303 (24%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            ++  +   I+   +      + IS       +           +  +    +     + 
Sbjct: 1   MKWERLWWSISALIIAGGIIAMIISYTTFKAPLRPGLDFIGGTRLQLQLACAVEGTCEQS 60

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +D+  VR  L   ++G+ + Q  +G    ++ ++ +  D   ++++ + + +KI +    
Sbjct: 61  IDVGEVREILNQQELGNSTIQVLEGN---ILSIRTKNLDVDERSQLQQELNEKIGDFDSE 117

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                 + VGP I +EL   G++ +++S   +++Y+ +RFK+ +A  AI  L+ DI  T 
Sbjct: 118 --TIQIDTVGPTIGQELFESGVLALLVSFFGIIVYLSVRFKFDYAFFAILALVHDILVTA 175

Query: 709 GFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           G FA+ G+    E +   + A+LT+IG+SVND VV+YDR+R+N   Y+  +S  ++++ S
Sbjct: 176 GVFAVLGLVAGVEVDSLFLVALLTIIGFSVNDTVVIYDRIRENTDRYSEELSINEIVENS 235

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +N+TLGRS+ T++   + ++ + ++GG  +  FA+ +  G +  + SSIFIA+  L +  
Sbjct: 236 VNQTLGRSINTTLTTLLPLIAIFLFGGETLKFFALALILGFIAGSYSSIFIASTSLAWWR 295

Query: 825 DWR 827
           + +
Sbjct: 296 NRQ 298


>gi|317055090|ref|YP_004103557.1| protein-export membrane protein SecF [Ruminococcus albus 7]
 gi|315447359|gb|ADU20923.1| protein-export membrane protein SecF [Ruminococcus albus 7]
          Length = 324

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 133/311 (42%), Gaps = 11/311 (3%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +  +   +  +  R     IS       I L F  GLN  I FKGG  +       +   
Sbjct: 1   MTNEKKNLDVVGHRKVFYCISCGLIALFIVLTFVLGLNVDIMFKGGTIMTYSYTGDISTD 60

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK---KITEIVPLS 649
            V+  +  +     +    +        ++ Q   +     V +   +   +        
Sbjct: 61  DVQDVVTEVLDQKSTVTKGENAATKQTTVKIQLSSTGGINEVKQNELQSALEEKFADNEL 120

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILDIT 705
            +  +  V      +   K +V VI +AI  +IYI  RF+        + ++  L+ D+ 
Sbjct: 121 ALFESSDVNASNGMDFFLKCLVAVIFAAIVTIIYIGFRFRKIGGISAGIFSVVALLHDLC 180

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              G F +   + N   +A +LT++GYS+N  +++YDR+R+N  L  + +   +L++ S+
Sbjct: 181 MVYGCFVICRFDINANFMAVLLTILGYSINATIIIYDRIRENQNLKGSKLELEELVNLSV 240

Query: 766 NETLGRSVYTSMAAFISVLPMAV----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +TLGRS++T++   +++  + +    +G S I SFA P+  G++    SS  IA  + +
Sbjct: 241 TQTLGRSIHTTVTTVMAMSVVCIVCTLYGVSSIISFAFPLIIGMLAGVYSSNCIAPTLWV 300

Query: 822 FIYDWRAKNAR 832
                  K+ +
Sbjct: 301 LWRRHAEKSPK 311


>gi|326316215|ref|YP_004233887.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323373051|gb|ADX45320.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1081

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 69/585 (11%), Positives = 157/585 (26%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P   P + +                  
Sbjct: 10  RPIFAGVLSVLIFLAGLIA-----LRALPISEYPEVAPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++FA     +     V   +  
Sbjct: 56  PKVIAETVATPLEESINGVEGMLYMGSQATTDGVMTLTVTFALGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++       
Sbjct: 116 AEPRLPEEVRRLGVTTVKSAPDLTMVVHMVSPNGRYDIDYLRNYAVLNVKDRLARIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   +   +       N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRAWLDPQKVAQRGLSAGDVVAAIRGQNVQAAAGVVGQSPGLPGVDMQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++ +              +    I                 +    A      
Sbjct: 236 SINARGRLATVE-------------EFGDIIVKTGADGAVTRLRDVARLELGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +            A L+          +          S   
Sbjct: 283 LLNNDPAVGMGVFQAPGSNALDISANVRATMAELQKHMPEGVEFRIAYDPTQFVRASIHS 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++V+ T A+L LLG ++   S+ G+V
Sbjct: 343 VIQTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSVVGTFAVLHLLGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLSPREATYRAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   +++        +             
Sbjct: 463 GLTGQFYRQFAVTIAISTVISAINSLTLSPALSALLLKGHHEPKDALTRGMDRVLGGFFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R      G           +L  + +  G  +     +
Sbjct: 523 RFNRVFHRGSEAYSGGVRRVIGRKALMLAVYLVLVGATWGLFKAV 567



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/396 (10%), Positives = 120/396 (30%), Gaps = 32/396 (8%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
            ++    ++A+ +I D+ I            G G   GF + +     +      + V+A 
Sbjct: 654  AVAGQLNQAFGSIQDAFIAMF---PPPPVAGLGTTGGFKLQIEDRASLGYGAMDAAVKAF 710

Query: 511  MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
            M    +  ++  +  +       +   I     R     V          +  L+ +  N
Sbjct: 711  MAKAYQTPELAGLFTSWQVNVPQLYADIDRTKARQLGVPVTDIFETLQIYLGSLYANDFN 770

Query: 571  YG-----------------IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                                +  G +++       V LS +     S         N   
Sbjct: 771  QFGRTYSVRVQADAPYRARAEDVGLLKVRSTTGEMVPLSALMKIENSFGPERAMRYNGFL 830

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              +             AQ  V  +  + +   +                       ++  
Sbjct: 831  SADVNGGPAPGFSSGQAQAAVERIAAETLPPGIGF-----EWTELTYQEILAGNSAVLVF 885

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ + + + +  +++     +  I  + + +   +    L   + N+     ++ L+G 
Sbjct: 886  PLAILLVFLVLAAQYESLTLPIAIILIVPMGLMAAMAGVWLTRGDNNVFTQIGLIVLVGL 945

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +  R+   L     +      ++    L   + TS+A  + VLP+ +    
Sbjct: 946  SAKNAILIVEFARE---LEFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGA 1002

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  +  +  + +  G++   +  +F+     + +  
Sbjct: 1003 GSEMRSAMGVAVFAGMIGVTAFGLFLTPVFYVALRR 1038



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 83/228 (36%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L +     +      G     +    +   +  Q  + E V+ +I      
Sbjct: 275 AADYSLRSLLNNDPAVGMGVFQAPGSNALDISANVRATMAELQKHMPEGVEFRIAYDPTQ 334

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               +   V   +   +    +V ++               W  ++  +  + + +  T 
Sbjct: 335 FVRASIHSVIQTLLEAIALVVVVVIL-----------FLQTWRASIIPLLAVPVSVVGTF 383

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               L G   N  ++  ++  IG  V+D +VV + + +N++     +S R+   +++ E 
Sbjct: 384 AVLHLLGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEA---GLSPREATYRAMREV 440

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            G  +  ++      +P+A      G     FA+ +A   V++A +S+
Sbjct: 441 SGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTVISAINSL 488


>gi|325068877|ref|ZP_08127550.1| protein-export membrane protein SecF [Actinomyces oris K20]
          Length = 367

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 79/309 (25%), Positives = 143/309 (46%), Gaps = 13/309 (4%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L     +I F+  R     I+++  + S  LL T GL  GIDFKGG ++ V       
Sbjct: 9   NELYSAKTSIPFVGKRKIWYLIAVVIILGSATLLGTVGLTPGIDFKGGSEITVTGLSSPS 68

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  L    +   S     G  +  V+        +++ R+  +  +  T     ++
Sbjct: 69  ERPANEVLSKSDLAASSSVTTMGSSSVRVQT-----TELSKQRLDSLAGQLATAYKTDAS 123

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             +   VGP  S ++ +K I G+I+  I + + IW  F+ W  A  A+  L  DI  T+G
Sbjct: 124 NVSATTVGPTWSSDVTKKAIRGLILFFIFVGLLIWAYFRTWKMAAAALLALCHDIIVTVG 183

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINE 767
            +AL   E     +  VLT++GYS+ D VVV+D++R+N + +   +  ++ +L + ++N+
Sbjct: 184 IYALSRFEVTPATIIGVLTILGYSLYDTVVVFDKIRENTEDFESQSRSTYAELANLAVNQ 243

Query: 768 TLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           T  RS+ TS+   + V  +      + G   +   A+ +  G++    SSIF+A P+L+ 
Sbjct: 244 TFIRSINTSVVGVLPVASLLFVGAFILGAGTLRDIALTLFIGMIAGTLSSIFLATPLLVD 303

Query: 823 IYDWRAKNA 831
           +     +  
Sbjct: 304 LRSREKRIK 312


>gi|28493239|ref|NP_787400.1| preprotein translocase subunit SecF [Tropheryma whipplei str.
           Twist]
 gi|28476280|gb|AAO44369.1| protein-export membrane protein SecF [Tropheryma whipplei str.
           Twist]
          Length = 322

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 71/318 (22%), Positives = 137/318 (43%), Gaps = 16/318 (5%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                   L     +I F+         S ++  +  +   F  G  +GI+F GG Q  +
Sbjct: 3   WFARFSDDLYSGRRSIDFVGRYKIWYSASFVILLVAILGPFFHGGYKFGIEFTGGSQFVI 62

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +   + + R  ++           F               D ++ T+   +      
Sbjct: 63  SDVKQKSIELAREVVKKTVDKPSVVTTFGKG-------LVVRTDQLSDTQSNSVRDALAD 115

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                        +GP   +++ R+GI G++I  + + + + + F+ W  +L AI  L  
Sbjct: 116 TYGVSHDAVAASYIGPSWGQDVTRQGIQGLVIFLLLVFVVMALYFRTWRMSLSAIIALFH 175

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T G + L G+E    AV  +LT++GYS+ D VVV+DR+R+N  L  T   ++ +++
Sbjct: 176 DLIITAGIYGLLGLEITPAAVIGLLTILGYSLYDTVVVFDRVRENRALDPTCSDYKGIVN 235

Query: 763 KSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +++N+T  RS+ TS+ A + V  +      + G S +   ++ +  G++  A S+I IA+
Sbjct: 236 RAVNQTFVRSINTSLIAVLPVASILFIGSLILGASTLSDISVALFIGMLAGAYSTIVIAS 295

Query: 818 PILLFIYDW--RAKNARI 833
           P    +       K  R+
Sbjct: 296 PTYALLCKKLPSGKEKRL 313


>gi|325996818|gb|ADZ52223.1| Protein-export membrane protein [Helicobacter pylori 2018]
          Length = 323

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKRTRILSFMRYSNYGVIVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNATKAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|261840235|gb|ACY00001.1| preprotein translocase subunit SecF [Helicobacter pylori 52]
          Length = 323

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 156/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEVRFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KG++ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGVLSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|241206056|ref|YP_002977152.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859946|gb|ACS57613.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1062

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 78/698 (11%), Positives = 188/698 (26%), Gaps = 58/698 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +   +G +        Q  + ++P   P               +V+    
Sbjct: 10  RPIFAAVISILFLVVGSIA-----YTQLPVSQYPEIAPPT-------------IVVRTSY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     +    +T++F      + +   V  
Sbjct: 52  PGADPQTIADTVSTPLEQQINGVEDMLYMSSYSSADGAMSLTITFKLGTDLDKVQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + T       +++            +  S     +  D +   
Sbjct: 112 RVSIALPRLPEEVQRLGVTTDKSSPDLMMVVHLLSPSHRYDQLYVSNYARNRIRDVLVRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     T+  +       N    G   G   +   +
Sbjct: 172 DGVGDVQIFGERQYSMRIWLDPEKLSAYGMTSDDVVSALRDQNVQVSGGKIGAPPVTGKN 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y V      S +                   I       R         I       
Sbjct: 232 AFEYTVRTDGRFSDVREFRY-------------VIVKSTTSGRLVQLQDVARIELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +   T      L   +     P     +          
Sbjct: 279 VTNSYLNNDPAVALGIFARPGTNALDTAHQVQTLMKDISQNFPPGLEYRIVYDTTEFISD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T A  A LV IV+ + +   +  ++   +I +++I T A+L   G +L + ++
Sbjct: 339 SITEVYRTIAEAAILVAIVVLVFLQSWRTAIIPIIAIPVSLIGTFAVLLAFGFSLNMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  +   +  +      + +   ++  +   V  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNLARGMTPKQASHVTMDEVGTAVVAISLVLIAVFVPT 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI--------- 525
            F     G   R FA+T+ ++  IS   ++++  A+   +++    ++  +         
Sbjct: 459 AFIPGISGQFYRQFAVTISVTTAISALNSLTLSPALAGILLKAHDHETKRMNVASRLGRG 518

Query: 526 ---NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-------NYGIDF 575
                   F  +    +          VG++         L  T  +             
Sbjct: 519 LADGFNHGFDRLSSGYSWTVRHLVSSWVGLTAAMVTFVCLLGATWYMGTKVPAGFIPTMD 578

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G   + +       L+   + ++ +     +         F         ++     V 
Sbjct: 579 QGYAIIVIQLPDGASLARTDAVVKQVGDIARTVPGVGNAVQFAGFSGATFTNASNAGVVF 638

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              K                       + +    I+ +
Sbjct: 639 VPFKSFAEREEGGENANKIIGELYGKLQSIQEAFIIAI 676



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 56/436 (12%), Positives = 132/436 (30%), Gaps = 20/436 (4%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
                   AG          +  +V    +    + +    + +      Y  +       
Sbjct: 614  VGNAVQFAGFSGATFTNASNAGVVFVPFKSFAEREEGGENA-NKIIGELYGKLQSIQEAF 672

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +IA       G G   GF + +       M   + + R MM      + +  +       
Sbjct: 673  IIAIPPPSVRGVGNSGGFKMQISDLENADMTRVLGLARQMMGAAATTEGLTGVFTTFSDA 732

Query: 531  FFLIPDCIAIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   I     R            +SI   +  +      G  Y +  +   Q  +  
Sbjct: 733  SPQYFLAIDRDKARFLNVPIPNIFNALSINLGVAYVNDFNAFGRVYQVRAQADRQYRMDR 792

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGE----KNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               + L V  +    + +G +            + + + +      +            K
Sbjct: 793  EDILALKVRSATGALVPLGTLMDIQDASGPALVQRYNMYVSVPLQGNPTPGTSTGDAIAK 852

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAI 697
            +  +      Q T     +++ +    G   + I +   + +++ +      W   L  I
Sbjct: 853  MEALAAKILPQGTTFEWTELAYQETHTGNTAIYIFALSVVFVFLALAAQYESWVLPLAII 912

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
              + L +   L   +L G++ N+     ++ LIG +  + +++ +  R   +      S 
Sbjct: 913  LIVPLAVLAALIGVSLRGMDNNVLTQIGLIVLIGLAAKNAILIVEFAR---QAEDEGKSP 969

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             +   ++ +  L   + T+ A    VLP+A+    G  +  S    +  G++      +F
Sbjct: 970  VEAAIEASHLRLRPILMTAFAFIFGVLPLAIATGPGAEMRQSLGTAVFSGMLGVTIFGLF 1029

Query: 815  IAAPILLFIYDWRAKN 830
            +     + +  WR K 
Sbjct: 1030 LTPVFYVVLRGWRRKR 1045



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 89/248 (35%), Gaps = 7/248 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              + R V L  V       Q    +    +     L        +++     ++ + K 
Sbjct: 256 STTSGRLVQLQDVARIELGAQDYVTNSYLNNDPAVALGIFARPGTNALDTAHQVQTLMKD 315

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           I++  P            +   + I +    +  +AI + I + +    W  A+  I  +
Sbjct: 316 ISQNFPPGLEYRIVYDTTEFISDSITEVYRTIAEAAILVAIVVLVFLQSWRTAIIPIIAI 375

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T      FG   N+  +  ++  IG  V+D +VV + + +N+      ++ +  
Sbjct: 376 PVSLIGTFAVLLAFGFSLNMLTLFGLVLAIGIVVDDAIVVVENVERNLA---RGMTPKQA 432

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              +++E     V  S+      +P A      G     FA+ ++    ++A +S+ ++ 
Sbjct: 433 SHVTMDEVGTAVVAISLVLIAVFVPTAFIPGISGQFYRQFAVTISVTTAISALNSLTLSP 492

Query: 818 PILLFIYD 825
            +   +  
Sbjct: 493 ALAGILLK 500


>gi|161520902|ref|YP_001584329.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           multivorans ATCC 17616]
 gi|189352915|ref|YP_001948542.1| putative cation/multidrug efflux pump [Burkholderia multivorans
           ATCC 17616]
 gi|160344952|gb|ABX18037.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia multivorans ATCC 17616]
 gi|189336937|dbj|BAG46006.1| putative cation/multidrug efflux pump [Burkholderia multivorans
           ATCC 17616]
          Length = 1047

 Score =  183 bits (464), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 59/557 (10%), Positives = 147/557 (26%), Gaps = 45/557 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I  +GL+       P+  + R+PS  P               + +   
Sbjct: 7   RRPVFAWVIALFIILLGLIAI-----PELPVARYPSVAPPT-------------VTITAT 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +    Q +IT++F            V 
Sbjct: 49  YPGATPQTMSDSVLSLIERELSGVRNLLYFESSADTSGQAQITVTFKPGTDPAMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V  +L    ++N ++  +     ++      +         +  + R  ++ +  
Sbjct: 109 NKLKSVEPRLPPVVRQNGVIVQSAATGFLLFVGLKSESGRYDENALADYMARNVVEDLRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP +L     +   ++      N        G       
Sbjct: 169 VEGVGKVQLFGS-EQAMRIWVDPQKLITYGLSMNDLTTAVSQQNVQIAPGSLGAAPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +        +        +      
Sbjct: 228 QRVTVPLTAQGQLT-------------TPEQFAKIVLRANANGSKVVLGDVARVELGPQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T +       M+           +         
Sbjct: 275 FTFVNSENGKPATFAGVQLAPGANAVKTAQAVRDQLDMIARTMPAGMSYSIPFDTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 335 ISIEKVVHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAMLGTFTIMLLTGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMVEEGLSPKDATIKAMKEITGAIIGITLVLTAVFL 454

Query: 476 VLFFFGG-------GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            +    G             A+++  S L+++    ++   M+  I      K       
Sbjct: 455 PMAMSSGSVGVIYQQFTLSMAVSILFSALLALTLTPALCATMLKPIEHGHHEKRGFFGWF 514

Query: 529 SRFFLIPDCIAIQFMRA 545
           +R F          +  
Sbjct: 515 NRRFDRLTQWYETRVGR 531



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 79/230 (34%), Gaps = 14/230 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q              F         ++V   + +      I   +
Sbjct: 258 SKVVLGDVARVELGPQSFTFVNSENGKPATFAGVQLAPGANAVKTAQAVRDQLDMIARTM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I K +  ++ + + + + +++     R+    A+ A   + 
Sbjct: 318 PAGMSYSIPFDTAPFVKISIEKVVHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAM- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T     L G   N+  +  ++  IG  V+D +VV + +     +    +S +D  
Sbjct: 377 ---LGTFTIMLLTGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMVEEGLSPKDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
            K++ E  G  +  ++      LPMA+  GSV      F + MA  I+ +
Sbjct: 432 IKAMKEITGAIIGITLVLTAVFLPMAMSSGSVGVIYQQFTLSMAVSILFS 481



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L +   L    L G+  ++     +
Sbjct: 865  QAPMLMALSMVVVFLVLAALYESWAIPLSVMLVVPLGLIGALAAVMLRGLPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L        +   +S    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAK---QLREEGKGLIEAAVQSSKLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             +  G       +    +  G++ A   +I
Sbjct: 982  VIASGASSETQHAIGTGVLGGMIAATVLAI 1011


>gi|315500359|ref|YP_004089162.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Asticcacaulis excentricus CB 48]
 gi|315418371|gb|ADU15011.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Asticcacaulis excentricus CB 48]
          Length = 1058

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/588 (11%), Positives = 153/588 (26%), Gaps = 39/588 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL           + ++P              +           
Sbjct: 9   RPIFAWVVAIVIMMAGLLSIA-----NLPVAQYPQIALP---------QVSVSAFYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    +        +        ITL+F      +    +V   LQ 
Sbjct: 55  AKTVEDSVTQIVEQQMKGIDGLLYMNSTSDSSGAASITLTFKAGTDPDIAQVQVQNKLQS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  L         +++     +       +    +    +DQ+   +   
Sbjct: 115 ATPLLPQEVQQQGLTVAKATSSFLMVVGLYAEDPSVSGHDLGDYMSSTLVDQLSRVDGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 175 TIQNFGAQ-YAMRIWLDPAKLNSYSLTPTDVMNAIRAQNTQVSAGQLGGLPAVKGTVLNA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++             +  +    I  +  G           I           
Sbjct: 234 TITAQSRLT-------------RIEQFRNIILKNTSGGAVVKLEDVARIELGAQQYTGTV 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +   T        A L          +V          S   
Sbjct: 281 KFNGREATGVAISLATGANALNTANAVKAKMAELEKNFPKGYRYVVPFDTTPFIELSIHE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   ++ + ++ T  +L+  G ++   ++ G+V
Sbjct: 341 VVKTLIEAVVLVFVVMFLFLQNWRATIIPTIAVPVVLLGTFGVLAAFGYSINTLTLFGLV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS--LDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IGL VD  I+V E +     + +    +  +        + I  + + + +   + FF
Sbjct: 401 LAIGLLVDDAIVVVENVERVMHEEKLPPMAATIKSMEEITGALIGIALVLSAVFIPMAFF 460

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+IT+  ++++S+  A+ +  A+   +                       
Sbjct: 461 GGSQGVIYRQFSITIVSAMVLSVVVALILTPALCATL------LKASDAEHQDKKGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
               F R                   +    +  G+      ++    
Sbjct: 515 FNRNFDRMANGYRNTVGKILGQGGRYMIVFAVIVGLMAFLFTRIPTSF 562



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 85/268 (31%), Gaps = 11/268 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +     + V LS   +   +     +   N     N           
Sbjct: 774  PFRMKPEDLNQWYVRNTQGQMVPLSAFTTAHWAYGSPRLERYNGAPSMNIQGMAAPGKSS 833

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + +++ +    I    T  + +         +    +  + I  + +L+   + 
Sbjct: 834  GQAMAEMEKIIAQLPPGISYEWTGLSLQEKASGAEAPM----LYALSIFVVFILL-AALY 888

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W   +  +  + L +   L    L G+  ++    A+LT+IG S  + +++ +  +  
Sbjct: 889  ESWSIPVAIVMVIPLGVLGALIATLLRGLSNDIYLQVALLTIIGLSAKNAILIVEFAK-- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
               +   +   D   ++    L   + TSMA    +LP+      G     +    +  G
Sbjct: 947  -HNHENGMGLIDATLQAARVRLRPIIMTSMAFTFGILPLFFANGAGSGSQNAIGTGLVGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            I+ A   ++F      + I      + +
Sbjct: 1006 ILSATFLAVFFIPLFFVIIEKMFKADEK 1033



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +     + + +  T G  A FG   N   +  ++  IG  V+D +VV + +     
Sbjct: 363 WRATIIPTIAVPVVLLGTFGVLAAFGYSINTLTLFGLVLAIGLLVDDAIVVVENV--ERV 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
           ++   +       KS+ E  G  +  ++      +PMA +GG   VI   F+I +   +V
Sbjct: 421 MHEEKLPPMAATIKSMEEITGALIGIALVLSAVFIPMAFFGGSQGVIYRQFSITIVSAMV 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++ +   +   +  
Sbjct: 481 LSVVVALILTPALCATLLK 499


>gi|156974045|ref|YP_001444952.1| hypothetical protein VIBHAR_01756 [Vibrio harveyi ATCC BAA-1116]
 gi|156525639|gb|ABU70725.1| hypothetical protein VIBHAR_01756 [Vibrio harveyi ATCC BAA-1116]
          Length = 1053

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 179/686 (26%), Gaps = 38/686 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G++           + ++P+  P              +       
Sbjct: 8   RPVFAWVLAILTMLAGVMSLF-----NLPVSQYPTISPTTI---------SINARYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        S        ITL+F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQNMTGLDYLRYLNSSSDAFGNATITLTFDSEADPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L ++ +   ++        +++     +       +    ++    D I       
Sbjct: 114 AMTSLPMEVQSQGIIVNKSNTSFLMVVAVYSEAPDFTENDIGDFVVTNIQDPISRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L Q   T   ++      N        G    +       
Sbjct: 174 QVQAFGSQ-YAMRVWLDPFKLTQFNLTAIDVANAIREQNAQVSSGQLGAAPAQSGQLLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     ++ +              +    I   E      +      + +         
Sbjct: 233 TISSASRLTSVA-------------EFRNIILKSEANGSNVYLKDVARVERGAESYDIKG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +   T E        L A                    S   
Sbjct: 280 QYNGFPAAGLGISLGTGANALETAEAVKERLGQLSATFPDGLKIAYPFETTPFVDASIKE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +   +  ++   ++ + ++ T A+L   G ++   ++  +V
Sbjct: 340 VIKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLLGTFAILYATGFSVNTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +        +      +    +    +T     V + F 
Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEDGLVPKEATKKSMGQITGALVGVGLTLSAVFVPMAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLSRFF 532
            G      R F+IT+  ++ +S+  AI +  A+   +++         K        +F 
Sbjct: 460 SGSTGVIYRQFSITIVAAMTLSVLVAIILTPALCASLLKKSDAEFSDKKGFFGWFNRKFD 519

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      +       + ++F+  S    +              Q  V +   +  +
Sbjct: 520 AATAGYEAGVAKMLKRTGRMLLVFAAMSAGAGWLFMNLPTSFLPDEDQGTVFSMAILPPN 579

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             +   E       ++   + + N              Q + + M    + +        
Sbjct: 580 STQEQTEKTLEKVRNYFLEEEKDNVASVFSVAGFSFAGQGQNMGMAFIGLKDWSEREAPG 639

Query: 653 NTEIVGPKISRELIRKGIVGVIISAI 678
           +        +          ++ +  
Sbjct: 640 SDAASLTGRAMGYFSTIKEAMVFAFA 665



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 83/245 (33%), Gaps = 6/245 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  DI  Q        L        +++     ++    +++   
Sbjct: 258 SNVYLKDVARVERGAESYDIKGQYNGFPAAGLGISLGTGANALETAEAVKERLGQLSATF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I++ I  ++ + + + + +++  + +   +     + + + 
Sbjct: 318 PDGLKIAYPFETTPFVDASIKEVIKTLLEAIVLVFLIMYLFLQNFRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N   + A++  IG  V+D +VV + +     ++   +  ++   KS+
Sbjct: 378 GTFAILYATGFSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERVMHEDGLVPKEATKKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V   +      +PMA   GS       F+I +   + ++   +I +   +   
Sbjct: 436 GQITGALVGVGLTLSAVFVPMAFMSGSTGVIYRQFSITIVAAMTLSVLVAIILTPALCAS 495

Query: 823 IYDWR 827
           +    
Sbjct: 496 LLKKS 500



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 75/245 (30%), Gaps = 11/245 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                        +       V  S   +   +     +   N     N            
Sbjct: 776  HRMQPKDFDSWYVRNSQGEMVPFSAFATGEWTYGSPLLQRFNGLPAMNIQGGAAPGVSTG 835

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   +  MV+K            + E         ++        +S + + + +   +
Sbjct: 836  EAMAEIEAMVEKLPPGFTVNWNGISYEERLSGNQAPMLY------ALSILVVFLVLAALY 889

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +  + L +   +      G++ ++    ++LT +G +  + +++ +  ++ 
Sbjct: 890  ESWSVPFAVVLVVPLGVLGAVLAVMTRGMDNDVFFQVSLLTTVGLATKNAILIVEFAKEY 949

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
               Y       +    ++   L   + TS+A  + V+P+A+  G         +  G++ 
Sbjct: 950  ---YEKGAGLIEATLHAVRVRLRPIIMTSLAFGLGVVPLAISAGVGSAGQN-AVGTGVLG 1005

Query: 808  AASSS 812
               S+
Sbjct: 1006 GMVSA 1010


>gi|94499695|ref|ZP_01306232.1| cation/multidrug efflux pump protein [Oceanobacter sp. RED65]
 gi|94428449|gb|EAT13422.1| cation/multidrug efflux pump protein [Oceanobacter sp. RED65]
          Length = 1017

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/528 (12%), Positives = 156/528 (29%), Gaps = 39/528 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   +  +L  ++  +GL+        +  +  +P+      I+           +   
Sbjct: 8   LQRPVFATVLNILVVLLGLMA-----YDRLTVREYPNIDVP-VIN--------VETIYLG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    +E  S ++       +    +++IT+ F   R  +  A  V   + 
Sbjct: 54  ANASIMESQVTQVLEESLSGVEGIDYISSTNSFEKSQITVYFKLDRDPDGAASDVRDRVG 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  D ++ ++         I+    + D+     +E +    R+  D +      
Sbjct: 114 RVRGQLPSDIEEPIVAKVEADAQPIIWLAFSSDRHSD--LEVTDIADRRVKDPLQTIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                  +    +    D +++     T   +       N          +    +   Q
Sbjct: 172 ASVQIVGQREFAMRIWLDRNKMAAYQVTAQDIEQSLSQQNLEIPAGTIESKEREFTVLAQ 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    +   I +                       G           +          
Sbjct: 232 TDLNTIEDFENIVI--------------------RNDGGYLVKLKDVARVAIGARNDNIV 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          ++  +     E        +R          V   +      S  
Sbjct: 272 SRFKGESAVALGVVKQSTANPLDVSEMVNERLPDIRNALPEGMNVAVAYDSSKFISKSID 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+F+ +   K  L+   +I +++I   +L+ L G ++   ++  +
Sbjct: 332 SVYTTIIEAVILVILVIFLFLRNLKATLIPLVTIPISLIGAFSLMLLFGFSVNTLTLLAM 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +GL VD  I+V E I     +      +   G       +     T       + F 
Sbjct: 392 VLAVGLVVDDAIVVLENIYRYIEEGMKPLEAAFKGMKEIAFAVIAMTFTLAAVFAPVAFT 451

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G        F++T+  ++++S F A+++   M   ++R+    S   
Sbjct: 452 PGRTGKLFTEFSLTLAGAVVVSGFIALTLSPVMASKLLRHNPNPSRFY 499



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 85/248 (34%), Gaps = 7/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  +I  +        L  ++    + +  + ++      I   +P 
Sbjct: 253 VKLKDVARVAIGARNDNIVSRFKGESAVALGVVKQSTANPLDVSEMVNERLPDIRNALPE 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      K   + I      +I + I +++ I++  +     L  + T+ + +   
Sbjct: 313 GMNVAVAYDSSKFISKSIDSVYTTIIEAVILVILVIFLFLRNLKATLIPLVTIPISLIGA 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                LFG   N   + A++  +G  V+D +VV + +    +     +   +   K + E
Sbjct: 373 FSLMLLFGFSVNTLTLLAMVLAVGLVVDDAIVVLENI---YRYIEEGMKPLEAAFKGMKE 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  +        P+A   G        F++ +A  +VV+   ++ ++  +   + 
Sbjct: 430 IAFAVIAMTFTLAAVFAPVAFTPGRTGKLFTEFSLTLAGAVVVSGFIALTLSPVMASKLL 489

Query: 825 DWRAKNAR 832
                 +R
Sbjct: 490 RHNPNPSR 497



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 71/217 (32%), Gaps = 9/217 (4%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             +Q    + V   + L+ +   + E+     +        +    +     + V      
Sbjct: 801  TVQAGLAEGVTIDQALDFLHGAVDELKQEMNLSVQVDYKGQTREFMESGAGLMVTFLLAL 860

Query: 680  MLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + IY+ +      +   L  + ++   +   L    + G   N+ +   +LTL+G     
Sbjct: 861  IFIYLVLSAQFESFKSPLIIMLSVPPALFGALFTLWIVGGTLNVYSQIGLLTLVGLITKH 920

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ +      +L  +       + ++    L   + T+ A  +  +P+A+    G   
Sbjct: 921  GILIVEFAN---QLQESGQDKLRAVIEASALRLRPILMTTAAMVLGAIPLALASGAGAES 977

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                   +  G+      ++F+     L I     K 
Sbjct: 978  REQIGWVIVGGMSFGTLLTLFVVPSFYLLIASQYRKP 1014


>gi|289548580|ref|YP_003473568.1| protein-export membrane protein SecD [Thermocrinis albus DSM 14484]
 gi|289182197|gb|ADC89441.1| protein-export membrane protein SecD [Thermocrinis albus DSM 14484]
          Length = 497

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 161/489 (32%), Positives = 269/489 (55%), Gaps = 18/489 (3%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
            +     +LGLDL+GG  +VLE D    +    + YS E+ + L+ +GI V  +   +  
Sbjct: 21  ILYYRPPNLGLDLKGGVSMVLEPDLAYALRQEYERYSSEVYAQLRDKGIQVLDVIPSEKG 80

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           + +     +  + +   +                     T     + + L +  I ++  
Sbjct: 81  LKVELLQPQDSQKVGQLIKEKFPSFE-----------TFTEERGGLYLKLKEEEIKKLQL 129

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
             +EQ++++IR+RID++G+ +  I RLG +RIL++LPG  D  R ++++G TA +    V
Sbjct: 130 GILEQTLDVIRKRIDELGVVQPVITRLGENRILVELPGVTDIERAKKVIGRTALLELKLV 189

Query: 218 LPNNSKKGFMFG-----VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
           +    K+  +                  +L+E K  I+G  L  A  + D       V  
Sbjct: 190 VDTGPKEKLITELTKDTELLPSLKGDEWFLLERKPVITGADLKTAYTSTDDMGSPA-VTF 248

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
              + G++ F E T  NIG+ LA+VLDG+V++APVI     S + QISG FT+E A  LA
Sbjct: 249 ELTDRGSKVFAEATEKNIGRRLAIVLDGKVVSAPVIRS-RISDRGQISGGFTLEEAQNLA 307

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
            +LRAG+LP  +  ++E  VG  LG D++ +G  + + G +L+VL ++  Y   G+ A+ 
Sbjct: 308 IVLRAGALPTNVLFLQETVVGPYLGKDAVEQGFKSGIVGFLLLVLLLVGRYKTAGVTANL 367

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           SI LN ++  AL+SLLGATLTLP IAGIVL +G+AVDSN+L+ ER+REE R   SV  ++
Sbjct: 368 SILLNTLMLFALMSLLGATLTLPGIAGIVLNMGIAVDSNVLIFERVREELRLGNSVRKAI 427

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           ++G+ R ++T++D+++T L+A+++LF FG G V+GFA T+ +  + S  + +   +  + 
Sbjct: 428 ELGYRRTWNTVWDTHVTLLVASLILFQFGSGPVKGFATTLTVGTIASFVSNVYFAKYFLE 487

Query: 513 FIIRYKKMK 521
            + + K  K
Sbjct: 488 VLYKLKLFK 496



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 81/175 (46%), Gaps = 4/175 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
              +VGP + ++ + +G    I+  + +++ +  R+K    + A  +++L+        +
Sbjct: 323 QETVVGPYLGKDAVEQGFKSGIVGFLLLVLLLVGRYK-TAGVTANLSILLNTLMLFALMS 381

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G    L  +A ++  +G +V+  V++++R+R+ ++L     S R  I+     T    
Sbjct: 382 LLGATLTLPGIAGIVLNMGIAVDSNVLIFERVREELRL---GNSVRKAIELGYRRTWNTV 438

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             T +   ++ L +  +G   +  FA  +  G + +  S+++ A   L  +Y  +
Sbjct: 439 WDTHVTLLVASLILFQFGSGPVKGFATTLTVGTIASFVSNVYFAKYFLEVLYKLK 493


>gi|212634152|ref|YP_002310677.1| multidrug efflux membrane fusion protein [Shewanella piezotolerans
           WP3]
 gi|212555636|gb|ACJ28090.1| Multidrug efflux membrane fusion protein, putative [Shewanella
           piezotolerans WP3]
          Length = 1040

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/686 (10%), Positives = 175/686 (25%), Gaps = 40/686 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ +++  +GL+       P   +  FP   P          +           
Sbjct: 9   RPKFAFVISTVLTLVGLISI-----PILSVAEFPEIAPP---------QVSVSTSYSGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++             +  + ++F      +    KV   +Q 
Sbjct: 55  ADIVKDTIGQPLEAEVNGVEGMLYMESKSANDGSYSLNVTFEVGTDPDMAQVKVQNRVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + K+  +    +    +++           ++  +        D +       
Sbjct: 115 AMPRLPEEVKRQGVKVEKQSPNILMVVNLVSPNETFDSLFITNYAGLNVKDALARQNGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    DP ++     T   +       N        G   +      QY
Sbjct: 175 KVQIIGALDYAMRIWLDPDKMASFSITATDVIGALQEQNIQVAAGRIGAAPVDPDQQFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  +                 +    +        +        +           
Sbjct: 235 TLQTKGRL-------------KNPKEFANVVVRANDDGSKVIVGDVARVELGSQTYDAQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +        L A         V          S   
Sbjct: 282 KLNNKPSAIISIYQSPDANALDVAKGIRAQMEALSANFPKDLEYEVLYDTTEFVETSIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+ V+F+ +   +  L+   +I +++I T A L L G ++   S+  ++
Sbjct: 342 VVQTLFISVALVIFVVFIFLQDVRSTLIPGIAIPVSLIGTFAFLLLSGMSINTVSLFALI 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +           I  + +  L         
Sbjct: 402 LAIGIVVDDAIVVVENVTRLMQDEGLSPKEATSKAMQEVTGPIIATTLVLLAVFAPTAVM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
               G     F++T+ +S+LIS   A+++  A+   +               + +     
Sbjct: 462 PGITGQMYAQFSVTICISVLISSVNALTLSPALCASVLRPPKEHTQGFHAKFNKHFNVFT 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 + +   +     V    L +               ++ K    + +       L
Sbjct: 522 GKYTKLVHVLTRKLTLVLVVFIALLAATGGLAKILPSGFVPMEDKKAFMVDIQLPDGASL 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +     +  L    ++    +   +           +     ++  +        P    
Sbjct: 582 NRTEDVMRDLVELTLAEPGVENVIHASGFSILTGSVASNGGLMIVTLSTWSERDTPDMAE 641

Query: 652 QNTEIVGPKISRELIRKGIVGVIISA 677
                     ++      +  +  S 
Sbjct: 642 HAIVAKLQ--AKYAANPSVKAMAFSL 665



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 68/202 (33%), Gaps = 9/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +K              +     +  +E+    +  +I +   +  Y+++      W  
Sbjct: 835  DAIKAMERAAAQTLPTGYSYEWTGQTYQEIKAGNLAPLIFALALVFTYLFLVAQYESWTI 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                +  + + I        L G E NL A   ++ LIG +  + +++ +  +   +L  
Sbjct: 895  PFAVMLAVPIAILGAFLNIWLVGAELNLYAQIGLVLLIGLACKNAILIVEFAK---QLRE 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  D  + +        + T+ +  + VLP+ V    G     +    +  G++ A 
Sbjct: 952  EGKSILDAGETAARLRFRAVLMTAFSFLLGVLPLVVATGAGAGSRRALGYSVFGGMLAAT 1011

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
                 +     + +   R K  
Sbjct: 1012 IVGTLLVPVFYVMMQTLREKFK 1033



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 91/238 (38%), Gaps = 8/238 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q  D   +  +     +   Q    +++   + +    + ++   
Sbjct: 260 SKVIVGDVARVELGSQTYDAQGKLNNKPSAIISIYQSPDANALDVAKGIRAQMEALSANF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P            +     I++ +  + IS   ++  ++I        L     + + + 
Sbjct: 320 PKDLEYEVLYDTTEFVETSIKEVVQTLFISVALVIFVVFIFLQDVRSTLIPGIAIPVSLI 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F  L G+  N  ++ A++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 380 GTFAFLLLSGMSINTVSLFALILAIGIVVDDAIVVVENV--TRLMQDEGLSPKEATSKAM 437

Query: 766 NETLGRSVYTSMAAFISVLP----MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            E  G  + T++   ++V      M    G +   F++ +   +++++ +++ ++  +
Sbjct: 438 QEVTGPIIATTL-VLLAVFAPTAVMPGITGQMYAQFSVTICISVLISSVNALTLSPAL 494


>gi|288818941|ref|YP_003433289.1| protein-export membrane protein [Hydrogenobacter thermophilus TK-6]
 gi|288788341|dbj|BAI70088.1| protein-export membrane protein [Hydrogenobacter thermophilus TK-6]
 gi|308752527|gb|ADO46010.1| protein-export membrane protein SecF [Hydrogenobacter thermophilus
           TK-6]
          Length = 288

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I FM  RF+    S L  + S   L+  GLN G+DF GG  + V  +  +D+  VR 
Sbjct: 1   MRQIDFMSLRFYAYVFSALLVLLSFLSLYWKGLNLGLDFTGGTVIEVRYSPKIDIGKVRE 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++   +  +  Q+       +     +  +   Q          + + +  + I + + 
Sbjct: 61  AIQKAGLSSVQVQDTASGTVLVKLKLGESREVALQ----------VLKKLGNAEIVSMQT 110

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           +G  IS EL +K I  ++++   +++Y+  RF+  +A   +  L  D+   +G ++L   
Sbjct: 111 IGGVISDELRKKAIWSLLVAIGGIMLYLGYRFEPVWAFSGVVALAHDVLVVVGAYSLTQR 170

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           E +L  VA+ L + GYS++D VVV+DR+R+++++   +   + +I+ SIN+TL R++ TS
Sbjct: 171 EISLDVVASFLIVAGYSMSDTVVVFDRIRESLRV-RKATDLKQVINLSINQTLSRTLMTS 229

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +   +  + + + GG  + +       GI V   SSIF+A+ ++L I     K
Sbjct: 230 LTVLVVAIALFLLGGPALSNIMFAFVIGIAVGTLSSIFVASALMLDIKSKLFK 282


>gi|209524586|ref|ZP_03273134.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Arthrospira maxima CS-328]
 gi|209495044|gb|EDZ95351.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Arthrospira maxima CS-328]
          Length = 1088

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/525 (11%), Positives = 138/525 (26%), Gaps = 39/525 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +G +        +  +  FPS  P                     
Sbjct: 8   KRPVFATVCSLVIILVGFV-----GFTRLPVQEFPSIDPPIVR---------VRTTYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + ++       S R+  + I + F   R  E     V   +  
Sbjct: 54  NAEVVETEVTEILEAAINGVQGLRTMTSSSREGLSSINVEFELERDLEVAVQDVLSRVSR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++      +  I+      D      +E S    +   + +       
Sbjct: 114 ATGRLPSDVNNPVVSKDGSDDDRIMWIAIYGD--RFSTLELSNYADQFLRNSLETVNGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  R+     T   +       N            +        
Sbjct: 172 SIFIGGERRYAMRIWLDAKRMAARNVTPLDVENALQRQNVEIPSGRIEGETMEFPVRTLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +    I        +                    
Sbjct: 232 RLQTPP-------------------EYEDLIIRRNPDGTQIRIGDIGYAEIGAESDRTIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S  +  +              L           V          +   
Sbjct: 273 RFRGQPAVTIGVSRLSDANLLEVATGVKERMKELSQNFPEGMNYTVAVDYSEFVQVAIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +   LV++V+F+ +   +  L+   +I +++I     +  LG ++ + ++  + 
Sbjct: 333 VWQSLLLAISLVVLVIFLFLKNWRATLIPTITIPVSLIGAFGAMFFLGFSINVLTLFALT 392

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L  GL VD  I+V E I    + K    F +           +  + +  +   V + F 
Sbjct: 393 LATGLVVDDTIVVLENIVRYIDEKKMHPFQAAIHAMGEVVFAVIATTVVLIAVFVPVSFS 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G   G     FAIT+ +S++ S F A+++  A+   I++      
Sbjct: 453 GGATGQIFNEFAITLAISVVFSSFVALTLAPAVSAIILKPSHSSK 497



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + +  +       +      +        +   +    + +     ++   K++++  
Sbjct: 251 TQIRIGDIGYAEIGAESDRTIARFRGQPAVTIGVSRLSDANLLEVATGVKERMKELSQNF 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P        +   +  +  I +    ++++   +++ I++  K W   L    T+ + + 
Sbjct: 311 PEGMNYTVAVDYSEFVQVAIDEVWQSLLLAISLVVLVIFLFLKNWRATLIPTITIPVSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              G     G   N+  + A+    G  V+D +VV + + + +      +        ++
Sbjct: 371 GAFGAMFFLGFSINVLTLFALTLATGLVVDDTIVVLENIVRYIDE--KKMHPFQAAIHAM 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            E +   + T++      +P++  GG+       FAI +A  +V ++  ++ +A  +
Sbjct: 429 GEVVFAVIATTVVLIAVFVPVSFSGGATGQIFNEFAITLAISVVFSSFVALTLAPAV 485



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 90/276 (32%), Gaps = 12/276 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               + +          +  G I +   + + V LS + +  +S     I+  N       
Sbjct: 757  RYEVIVRGQSEFRASPEDIGEISVRSESGQMVPLSNLVTIRDSTLPPQINHFNRFRSATL 816

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                        A   + ++  + I E +       +               I    +S 
Sbjct: 817  EGSAAPGYSLGEALEALQDLADRTIPETMRTDLAGESREFSQAG-----DATIYIFGLSL 871

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
              + + +  +F+ +      +  + L +    G      +E N+ +   ++ LIG S  +
Sbjct: 872  AFIFLTLAAQFESFVDPFVILLAVPLSLLGAFGALWFAELELNIYSRIGLIMLIGLSTKN 931

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ +      +L     S      ++        + T+++    V+P+A     G   
Sbjct: 932  SILIVEFAN---QLREMGRSITQAAIEAGKVRFRPILMTALSTIFGVMPLAFATGAGAVS 988

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              S  + +  G++V+   S++I     +     +++
Sbjct: 989  RVSIGMSVMGGMLVSTLLSLYIVPVFYIIATTLQSR 1024


>gi|86156945|ref|YP_463730.1| hydrophobe/amphiphile efflux-1 HAE1 [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85773456|gb|ABC80293.1| Hydrophobe/amphiphile efflux-1 HAE1 [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 1055

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/687 (11%), Positives = 180/687 (26%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  MI   G L  L        + ++P+  P              +       
Sbjct: 8   RPIFAWVISIMIMLAGGLAIL-----GLPVSQYPAIAPPVVT---------VYATYPGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        +        +TL+F      +    +V   LQ 
Sbjct: 54  AQTLENSVTQVIEQKMTGIDHLRYMSAASDSSGNASVTLTFEAEADPDIAQMQVQNKLQN 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +         ++++    +       + +       +DQI       
Sbjct: 114 AMPLLPQQVQQQGVRVLKTVNNYLLIAGLISEDGSMTRDDLNDYAFSNIVDQISRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D  +L     T   +S      N        G            
Sbjct: 174 EVTAFGTQ-YAMRIWLDADKLASFKLTPLDVSAALRAQNAQVSTGSLGAAPAVPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 + +  +        +                    
Sbjct: 233 TVTSQTRL-------------QTPEQFLNILLRVNPDGSQVRLRDVGTANLGGETYELES 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   T E      A L     P    +    +      S   
Sbjct: 280 YYNGKPAGGMGIRLASGANALKTAELVRAKLAELSQFFPPGMKVVYPVDSTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+F+ +   +  L+   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVKTLAEAIILVFLVMFLFLQNFRATLIPTIAVPVVLLGTFGVLAAAGFTINTLTMLGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQITGALVGIALVLAAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++ +S+  A+++  A+   I                   +   
Sbjct: 460 GGSVGVIYRQFSITVVSAMALSVVVALTLTPALCATILKPVEKGHHASEKGFFGWFNRLY 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                L    +     RA    +  ++L +      L         + +G I   V    
Sbjct: 520 GQGSGLYEKSVGWILRRAGRALIVYAVLLAALGGLFLHLPTGFLPEEDQGSIINMVQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +   R+ ++ +    +  +  + E    +      G           +K        
Sbjct: 580 GATMDRTRTVMQEVTRHYLEDEKDNVEAVMAITGFSFSGRGQNAGLAFVRLKDWSERPKK 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
                       +   ++        +
Sbjct: 640 EQHAPAVAGRAMRAFSQIKDGLAFAFV 666



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +  ++           +        +++    ++     ++++  
Sbjct: 258 SQVRLRDVGTANLGGETYELESYYNGKPAGGMGIRLASGANALKTAELVRAKLAELSQFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P        +      R  I + +  +  + I + + +++  + +   L     + + + 
Sbjct: 318 PPGMKVVYPVDSTPFVRISIEEVVKTLAEAIILVFLVMFLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGVLAAAGFTINTLTMLGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +PMA +GG   VI   F+I +   + ++   ++ +   +
Sbjct: 436 GQITGALVGIALVLAAVFVPMAFFGGSVGVIYRQFSITVVSAMALSVVVALTLTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 9/223 (4%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + F+G    +++ +  PG S  +         K                           
Sbjct: 815  ERFNGSPAMVIQGEPSPGHSSGEAMAAMEEHVKALPDGIGLEWSGLSYEERLSGANAPAL 874

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  +A+     +   W      +  + L +   + F  L  ++  +     +LT
Sbjct: 875  YAISLLVVFLALA---ALYESWSIPFSVMLVVPLGVLGAVLFTELASMDAGVYFQVGLLT 931

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-- 786
             IG S  + +++ +  R    LY   +S  D   ++    L   + TS+A  + VLP+  
Sbjct: 932  TIGLSAKNAILIVEFAR---ALYEQGMSLFDAAVEAARMRLRPIIMTSLAFILGVLPLAI 988

Query: 787  -AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                G +   +  + +  G+V A   +I +     + I   R 
Sbjct: 989  ANGAGAAGQNAIGMAVIGGMVSATFLAILLVPVFFVKIAGKRK 1031


>gi|15612515|ref|NP_224168.1| preprotein translocase subunit SecF [Helicobacter pylori J99]
 gi|6647858|sp|Q9ZJ65|SECF_HELPJ RecName: Full=Protein-export membrane protein secF
 gi|4156068|gb|AAD07023.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
          Length = 323

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQVRILSFMRYSNYGVIVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNATQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|262376615|ref|ZP_06069843.1| multidrug resistance protein mexB [Acinetobacter lwoffii SH145]
 gi|262308325|gb|EEY89460.1| multidrug resistance protein mexB [Acinetobacter lwoffii SH145]
          Length = 1031

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/551 (13%), Positives = 165/551 (29%), Gaps = 41/551 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  IGL   +        ++R+P   P               + +    
Sbjct: 9   RPIFAGVLAIVVMAIGLFAGM-----NLPVERYPDIAPP-------------RITVAATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   +K           S    ++++++SF +    +    +V  
Sbjct: 51  SGASAETVEESVTQVLEQQIKGIDHLLYFSSSSDSSGRSRVSISFENGTDPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + GV ++L  D ++  +        + ++     +   S+ IE S  ++      I   
Sbjct: 111 AINGVLNRLPEDVQRQGVNVFKSLGDTHMVISLYDESGRSNNIELSDYLMTHLEQDISRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    +P +L+Q     + +       N        G     D  
Sbjct: 171 EGIGEVDVFGSQ-YAMRIWLNPVKLKQYNLMPSDVRAAIEAQNTQVAAGAIGDLPAIDEQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     +                 +    I   +      +      +       
Sbjct: 230 YLNAKVTSGSRL-------------KTVEEFQNIIVKSDRAGSFIYLKDIARVELGAENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           S  +  +   T        A +               N      
Sbjct: 277 QSYSTNNGYPSAGLGISLASGANAIATSNLIKAEIARISQQLPEGYKIAYPRDNTPFVQE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+F+ +   +  L+   ++ + ++ T+A+L  LG ++   ++
Sbjct: 337 SIKEVVKTLIEAVILVIIVMFIFLQNWRATLIPTVTVPVVILGTMAVLYALGMSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     + Q S   +           +    +      + 
Sbjct: 397 FALVLAIGLLVDDAIVVVENVERLMHEKQLSAKDAALESMQEISGALIGITLVLTAVFIP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++ +S+  A+ +  A+   I++     +   +  ++   
Sbjct: 457 MAFFGGSTGVIYRQFSITLVAAMSLSLMVALILTPALCALILKPNPKPAKWASWFNQKLE 516

Query: 534 IPDCIAIQFMR 544
                 +   +
Sbjct: 517 HLKYRYLNLSK 527



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/212 (18%), Positives = 88/212 (41%), Gaps = 8/212 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S      +  + +++ E   ++  ++      +  +E+++  I  VI+  I M I+
Sbjct: 300 AIATSNLIKAEIARISQQLPEGYKIAYPRDNTPFVQESIKEVVKTLIEAVILVIIVMFIF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T+      G+  N   + A++  IG  V+D +VV + 
Sbjct: 360 LQ---NWRATLIPTVTVPVVILGTMAVLYALGMSINTLTLFALVLAIGLLVDDAIVVVEN 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           +     ++   +S +D   +S+ E  G  +  ++      +PMA +GGS       F+I 
Sbjct: 417 V--ERLMHEKQLSAKDAALESMQEISGALIGITLVLTAVFIPMAFFGGSTGVIYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   + ++   ++ +   +   I     K A+
Sbjct: 475 LVAAMSLSLMVALILTPALCALILKPNPKPAK 506



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 74/247 (29%), Gaps = 7/247 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         +      S       +           D    +   + ++     I    
Sbjct: 787  NDQNQMVPFSNFSQVGWSGGPEVVNRFMGYTALQMEADRAKDSSSGQAMQDVEALIAEQE 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
             +           ++   + I   +IS   + + +   ++ W      ++ + L I   +
Sbjct: 847  GVDVVWSGLSFEEKQSNNQAIWLYLISIGFIFLCLAALYESWSIPTAVMSAIPLGIGGNI 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  L G   ++    A+LT IG S  + +++ +             S  +   +  +  
Sbjct: 907  IFSYLAGFPNDIYFQIALLTTIGLSCKNAILIVEFA---SLAQQQGKSVVEAALEGASLR 963

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    +LP+      G        + +  G++      +     + + I  
Sbjct: 964  LRPILMTSLAFGAGILPLVFATGAGAVSRQEIGVSVFGGVIFGTLLVLIFIPFMYVLIRR 1023

Query: 826  WRAKNAR 832
               K +R
Sbjct: 1024 LIIKKSR 1030


>gi|32265673|ref|NP_859705.1| hypothetical protein HH0174 [Helicobacter hepaticus ATCC 51449]
 gi|32261721|gb|AAP76771.1| conserved hypothetical membrane protein [Helicobacter hepaticus
           ATCC 51449]
          Length = 1042

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/575 (12%), Positives = 173/575 (30%), Gaps = 38/575 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  +I  +G +           ++ +P  +P   +                  
Sbjct: 8   RPIFAMVLSIVITLVGCISMFV-----LPIEEYPQVVPNEIM---------VQATYSGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + ++       S        +++ F++    +     V+  +Q 
Sbjct: 54  AEVMANTVASIIEDSINGVEGMLYMKSSSTSSGVMNLSVFFSNDTNADMALVNVSNRVQA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + ++  + T       + +     D     A   +   I   I+++       
Sbjct: 114 ALAQLPTEVQRVGITTRKRSSTMLGVYAMYSDNPAYTATFVANYGILNVINELKRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  +L Q   T ++++      N+      FG   +R      Y
Sbjct: 174 DVTPFGTRDYSMRIWLDIDKLSQNNLTPSEVAKVIAEQNSQFAVGSFGKEPVRSDIAFTY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +                    +    I                 I           
Sbjct: 234 SVTTQGR-------------FVSAEEFGNIIIRSNNDGSALRLKDVAKIELGAKDYSVSP 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +           + +   +     +        L                      S   
Sbjct: 281 LFNGKDAAAFGIALQPGANALDVADNVEKKMKELSQNFPEGLHYKNVYNTTDFVKISIKE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+I+++  +   +  ++   +I +++I T A +  LG ++ L ++ G++
Sbjct: 341 VRKTFIEAIVLVVIIMYFFLQNFRATIIPVIAIPVSIIGTFAGMYALGFSINLLTLFGLI 400

Query: 422 LGIGLAVDSNILVNERIREENRK-------NQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           L IG+ VD  I+V E +               SV  +           +    +      
Sbjct: 401 LAIGIVVDDAIIVIENVERILHTETKANGEKYSVKEATLKAMGEIQGPVVAIVLVLCSVF 460

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F G   G   + FAIT+ +S++IS F A+++  A+ + I++ K+ K   I      
Sbjct: 461 IPVAFIGGFSGAIYKQFAITIVISVVISGFVALTLTPALCVSILKAKEPKPFYIVKRFND 520

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           F             R    G ++L    +I ++  
Sbjct: 521 FFDWLTHKFGMQIGRALRRGSALLLCFVAIIVVTW 555



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 87/246 (35%), Gaps = 8/246 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +   +S      +            +++     +E   K++++  P     
Sbjct: 265 DVAKIELGAKDYSVSPLFNGKDAAAFGIALQPGANALDVADNVEKKMKELSQNFPEGLHY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I++     I + + ++I ++   + +   +  +  + + I  T    
Sbjct: 325 KNVYNTTDFVKISIKEVRKTFIEAIVLVVIIMYFFLQNFRATIIPVIAIPVSIIGTFAGM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRM-RKNMKLYTTSISFRDLIDKSINE 767
              G   NL  +  ++  IG  V+D ++V    +R+     K      S ++   K++ E
Sbjct: 385 YALGFSINLLTLFGLILAIGIVVDDAIIVIENVERILHTETKANGEKYSVKEATLKAMGE 444

Query: 768 T---LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               +   V    + FI V  +  + G++   FAI +   +V++   ++ +   + + I 
Sbjct: 445 IQGPVVAIVLVLCSVFIPVAFIGGFSGAIYKQFAITIVISVVISGFVALTLTPALCVSIL 504

Query: 825 DWRAKN 830
             +   
Sbjct: 505 KAKEPK 510



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 59/165 (35%), Gaps = 6/165 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G +  I   I + + +  ++ +W   L  ++ +   +   +    L G++ ++     +
Sbjct: 873  TGEIAFIFGLIFVFLILCAQYERWLMPLSVLSAVPFAVFGAVVATTLRGLDNDIYFNIGL 932

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LI  S  + +++ +                +    +        + TS+A  I VLP+
Sbjct: 933  VMLIALSAKNAILIVE--FAQHLHEKEGKGIMESAIGAAKLRFRPIIMTSLAFSIGVLPL 990

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +    G +   +    +  G++ A   +IF       +I     
Sbjct: 991  VLSTGAGSAARHAIGTGVIGGMMAATFIAIFFIPLFWSYIARLSQ 1035


>gi|291515495|emb|CBK64705.1| Cation/multidrug efflux pump [Alistipes shahii WAL 8301]
          Length = 1013

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 82/676 (12%), Positives = 185/676 (27%), Gaps = 44/676 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   GL+           +  FPS                        
Sbjct: 9   RRPVLASVLTIIILLFGLI-----GYSYLGVREFPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +           Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSSQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++    I       +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVTKADADASPILMV--TIQSDKRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+++     T   +                        D    
Sbjct: 173 GVQIWGEKRYSMRLWLDPAKMAGYGITPTDIKTAL--------------------DRENV 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                     T +   D+   E   R                     
Sbjct: 213 ELPSGSIEGNTTELTIRTMGLMHTTREFNDLVVREDADRIIRMSDVGRAELGPQDTRSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++       +      N      S   
Sbjct: 273 KMNGIPMVGVVVIPQPGANHIEIADAVYARMESMKKDLPDDVVTSYGFDNTRFIRASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+I++F+ +   +  L+    I +++I T  ++   G ++ + S+  +V
Sbjct: 333 VRTTVYEAFILVIIIIFLFLRNWRVTLIPCIVIPVSLIGTFFVMYAAGFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +   G    +  +  ++IT +     + F  
Sbjct: 393 LSVGLVVDDAIVMTENIYIRIERGMTPFDAGIEGAKEIFFAVISTSITLIAVFFPIVFME 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI---- 534
           G      R F++ +  +++IS F A++I   +   ++  ++ KS   +    FF+     
Sbjct: 453 GMTGRLFREFSMVISGAVVISTFAALTITPMLATKLLVRQEKKSWFYSKTEPFFVWLNDF 512

Query: 535 PDCIAIQFMRARFWGVGISILFSI-CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  F+R R+  + + +L                  ++ +  I +    +       
Sbjct: 513 YSRTLASFLRRRWLALPLVLLTMGLIGWLWSAIPAEMAPLEDRSQISINTRGSEGATYEY 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R   E +     S           V                    +        + +++
Sbjct: 573 IRDYTEDINRLVDSLVPEASSVTARVSSGSGNVRIALTDIATRKRSQMEIAEQISAAVRS 632

Query: 654 TEIVGPKISRELIRKG 669
                  + ++    G
Sbjct: 633 KTKARAFVQQQSTFGG 648



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T       G   N+ ++ AV+  +G  V+D +V+ + +     
Sbjct: 355 WRVTLIPCIVIPVSLIGTFFVMYAAGFSINVLSMLAVVLSVGLVVDDAIVMTENI---YI 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                ++  D   +   E     + TS+       P+    G        F++ ++  +V
Sbjct: 412 RIERGMTPFDAGIEGAKEIFFAVISTSITLIAVFFPIVFMEGMTGRLFREFSMVISGAVV 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
           ++  +++ I   +   +   + K +
Sbjct: 472 ISTFAALTITPMLATKLLVRQEKKS 496



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 70/167 (41%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +   I++ + + + +  +F+ +   L  + T+ L I   L F        N+ +   ++ 
Sbjct: 846  MFAFILAVMLIYLILAAQFESFKDPLVIMLTVPLAIAGALVFMWGADQTMNIFSQIGIIM 905

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +     +     I+++  + L   + TS +  + +LP+ V
Sbjct: 906  LIGLVAKNGILIVEFAN---QKQEAGLDKMRAIEEASLQRLRPILMTSASTILGLLPLTV 962

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G          I +  G+VV+   +++I   I  ++   R K ++
Sbjct: 963  ATGEGANGRIAMGIAVVGGMVVSTLLTLYIVPAIYSYVSTNRIKKSK 1009


>gi|167645052|ref|YP_001682715.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Caulobacter
           sp. K31]
 gi|167347482|gb|ABZ70217.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Caulobacter sp. K31]
          Length = 1059

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/544 (12%), Positives = 147/544 (27%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      LP+  +  +P  +P   +                  
Sbjct: 10  RPRFAAVLSIVIFIAGLVA-----LPRLPISEYPEVVPPTVV---------VRAAYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++               I T++FA     +    +V   +  
Sbjct: 56  PAVIGQTVAAPLEQAINGVEGLIYQSSQSASDGAMILTVTFALGTDLDKAQVQVQNRVAQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  + ++  + T        ++            +  S        D++   +   
Sbjct: 116 ALPKLPQEVQRIGVTTDKASPDLTLVVHMISPNNRYDMLYLSNYAQLNVRDRLKRVDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L  L  T   +       N        G          Q 
Sbjct: 176 DVQIFGAGAYSMRIWLDPEKLASLNMTAGDVVKALREQNVQVAAGQLGAPPTPGGAEFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    I                 +           
Sbjct: 236 SVNAPGRLTDEE-------------QFRNVIIRSGDHGEITHLGDVARVEMGANNYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +              L+          +          S   
Sbjct: 283 LLDNKSAVAMPIFQRPGSNALQMAADIKKTMKELKKEFPEGVDYEIIYDTTAFVQESIDS 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A+L +LG  L   ++ G+V
Sbjct: 343 VIHTLIEAIILVVLVVVLFLQGWRASIIPLIAVPVSLIGTFAILLMLGFGLNALTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     S     I  + +      +   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNITNGLEPAAATRKAMSEVTGPIISTALVLCAVFIPTAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S +IS F ++++  A+   +++           +    L     
Sbjct: 463 GLSGQFYRQFALTIAISTVISAFNSLTLSPALAAVLLKSHDAPKDRFQKVIDAALGWLFN 522

Query: 539 AIQF 542
               
Sbjct: 523 PFNR 526



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 17/224 (7%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E ++   L  +     A        +K + ++              +++ + I  G   +
Sbjct: 823  ESHYNGVLTAEINGGPAPGYSTGQAQKALEDLAKQELPNGMGFEWTELTYQQILAGNTAI 882

Query: 674  IIS----AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +      +A L+ +     W   L  I  + + +   L    L   + N+     ++ L
Sbjct: 883  YVFPLCVLLAFLVLVAQYESWTLPLVVILIVPMTLLSALAGVLLTHGDNNIFTQIGLIVL 942

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + +++ +  ++         +    + ++    L   + TS+A  + V P+   
Sbjct: 943  VGLACKNAILIVEFAKE---REEHGDTPLQAVLEACRLRLRPILMTSIAFIMGVWPLVTS 999

Query: 790  ---GGSVIGSFAIPMAFGIVVAAS-SSIF--IAAPILLFIYDWR 827
               G  +       M   +       ++F  I  PI  F+    
Sbjct: 1000 HGAGAEMRR----AMGVAVFSGMLGVTVFGLILTPIFYFVIRRN 1039



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 89/243 (36%), Gaps = 7/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L  V           +     +     +   Q    +++     ++   K++ +  
Sbjct: 261 EITHLGDVARVEMGANNYALRSLLDNKSAVAMPIFQRPGSNALQMAADIKKTMKELKKEF 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +E I   I  +I + I +++ + +  + W  ++  +  + + + 
Sbjct: 321 PEGVDYEIIYDTTAFVQESIDSVIHTLIEAIILVVLVVVLFLQGWRASIIPLIAVPVSLI 380

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     + G   N   +  ++  IG  V+D +VV + + +N+   T  +       K++
Sbjct: 381 GTFAILLMLGFGLNALTLFGLVLAIGIVVDDAIVVVENVERNI---TNGLEPAAATRKAM 437

Query: 766 NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +E  G  + T++      +P A      G     FA+ +A   V++A +S+ ++  +   
Sbjct: 438 SEVTGPIISTALVLCAVFIPTAFISGLSGQFYRQFALTIAISTVISAFNSLTLSPALAAV 497

Query: 823 IYD 825
           +  
Sbjct: 498 LLK 500


>gi|21232598|ref|NP_638515.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767328|ref|YP_242090.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114398|gb|AAM42439.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572660|gb|AAY48070.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1041

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/678 (11%), Positives = 184/678 (27%), Gaps = 43/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P               +      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  +R  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDALAGIEGIETIEARSRNGSSDISIEFVPTRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARPPEISKVESDADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARALTVADVETALQNENVELPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLSKGEGGYVVRLGDVAKVELTSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +       A   A  ++          V          +    
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVAREARAQAEEIQKTLPQGTNIFVAFDTTTFIDAAVERV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LVL+V+++ +   +  L+   ++ + +I     L     ++ L ++  +VL
Sbjct: 335 YHTLIEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E I+      +    +   G  +    +  +    +   + + F  G
Sbjct: 395 CIGLVVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP---- 535
                 R  A+ +  ++ IS F A+++   M   ++R       +         +     
Sbjct: 455 NTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRAHDQAKPNRFHQWFNRRMQAVSA 514

Query: 536 -DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +++    R W   + +L ++ +   L +   +     +      ++ + P      
Sbjct: 515 AYGRSLERHVQRTWIFALLMLLALGASAWLMSRIPSELAPAEDRGNFQIMIDGPEGAGFD 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +  +  Q+ DI       +K  +      PG   +   +         +         T
Sbjct: 575 YTVGQMHQVEDILRPYVGADKPIVRANPRVPGGFGSSEEMHTGRVSVFLQDWEKRDRPTT 634

Query: 655 EIVGPKISRELIRKGIVG 672
           E+      +  +  G+  
Sbjct: 635 EVADELQQKLNVLTGVRA 652



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 859  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     S    I +S +  L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDEGRSVHAAIVESASVRLRPILMTSIATVVGAIPLVV 975

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GG       +  + + FG+ ++   S+++       I  +      +
Sbjct: 976  AGGPGSASRATIGVVVIFGVSLSTLLSLYVVPAFYSLIAPYTKSPEAL 1023



 Score = 44.7 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 4/210 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V     +       FQ+       L  ++    +++   R      ++I + +P 
Sbjct: 254 VRLGDVAKVELTSAERRAYFQSNGVPNVGLGIVRNSTANALDVAREARAQAEEIQKTLPQ 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
            T               + +    +I + + +L+ IW+       AL    T+ + +   
Sbjct: 314 GTNIFVAFDTTTFIDAAVERVYHTLIEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIAA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 F    NL  + A++  IG  V+D +VV + +    +             +   +
Sbjct: 374 FIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENI---QRRIDLGEPPLVAAKRGTGQ 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                + T+       LP+    G+    F
Sbjct: 431 VAFAVIATTAVLVAVFLPVGFLEGNTGRLF 460


>gi|319942115|ref|ZP_08016433.1| RND efflux transporter [Sutterella wadsworthensis 3_1_45B]
 gi|319804325|gb|EFW01209.1| RND efflux transporter [Sutterella wadsworthensis 3_1_45B]
          Length = 1051

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/666 (9%), Positives = 170/666 (25%), Gaps = 51/666 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P               + +    
Sbjct: 9   RPVFSWVIAIIIMLAGILSI-----STLPVSQYPQIAPP-------------QVSITATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   L    G               IT++F      +    +V  
Sbjct: 51  PGASASTIENTVTQVIEQNLTGLDGYLYMQSTSDSAGRVSITVTFETGTNPDMAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L    ++  +         +++             +    +     + +   
Sbjct: 111 KISTALTSLPQVVQQLGVTIQKTSANFLMVVGFVSKDPSIKTADLGDFLTSNIQEPLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L +     + ++      N          +      
Sbjct: 171 SGVGEAQVFGA-SYAMRVWLDPDKLVKYKLNPSDITSAISAQNMQVSTGSLAAQPTDGKQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +                      +          +      +       
Sbjct: 230 EFTATISSSSLL-------------ETPEDFRNILLKVTEEGANVYLRDVAEVKLDQKDY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +          +       +  +   T          L++        +V          
Sbjct: 277 IALGTFNGYAASGMAIKLASGSNALETQAAVLKRVEELKSLMPQGVEVVVPFDTTPFVRA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV+ V+F+ +   +  ++   ++ + ++ T  +L+  G ++ + ++
Sbjct: 337 ALHEVVKTLIEAIILVVCVMFLFLQNWRATIIPTIAVPVVLLGTFGMLAATGFSINMLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +             +      +    +    +      + 
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMREDGTDPHTATVKSMGQITGALVGIAMVLSAVFIP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+++  ++   I++               + 
Sbjct: 457 MAFFGGSTGVIYRQFSITIVSAMVLSVIIALTLTPSLCAKILKPIDHDEHMGKGGFFGWF 516

Query: 534 IPDCIAIQF----------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                A+ F                 V  +++        L T       + +G   + V
Sbjct: 517 NRGFEALTFAVRDGVGGFIHHPLLLVVCYALVVGGMVWGFLKTPTAFMPGEDQGVALMQV 576

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +   +      +  +Q      ++ D +  F VR     G           +K    
Sbjct: 577 QLPQGATMERTDHEVTRIQKFLEKTESRDIDSFFTVRGFSFAGSGQNMALGFVKLKDWSA 636

Query: 644 EIVPLS 649
                 
Sbjct: 637 RPNDDQ 642



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/197 (18%), Positives = 78/197 (39%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A  + +E +K  + + V +    +T         E+++  I  +I+    M +++ 
Sbjct: 302 ETQAAVLKRVEELKSLMPQGVEVVVPFDTTPFVRAALHEVVKTLIEAIILVVCVMFLFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   +     + + +  T G  A  G   N+  + A++  IG  V+D +VV + + 
Sbjct: 362 ---NWRATIIPTIAVPVVLLGTFGMLAATGFSINMLTMFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +            KS+ +  G  V  +M      +PMA +GGS       F+I + 
Sbjct: 418 -ERVMREDGTDPHTATVKSMGQITGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIV 476

Query: 803 FGIVVAASSSIFIAAPI 819
             +V++   ++ +   +
Sbjct: 477 SAMVLSVIIALTLTPSL 493



 Score = 56.2 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 68/208 (32%), Gaps = 11/208 (5%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                  S    + +E +  K+                 +   +     +  +  S + + 
Sbjct: 833  PAAGVSSGEAMQAIEEIAAKVFPEGYSIAWNGVSYQERQAGSQ--EAALYAI--SLLVVF 888

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +   ++ W   +  +  +   I   LG     G+  ++     +LT +G    + +++
Sbjct: 889  LCLAALYESWSVPIAVLLVIPCGIVGALGLTLFLGMNNDVYFKVGMLTTMGLVSKNAILI 948

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +  +  +               ++   L   + TS+A  + VLP+A+    G     + 
Sbjct: 949  VEFAKDLVAA---GEDVVKAALHAVELRLRPILMTSLAFGLGVLPLAIAHGAGSGAQNAI 1005

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + +  G++      + +     +F+  
Sbjct: 1006 GVGVLGGMITGTILCVALVPAFFVFVTR 1033


>gi|316933749|ref|YP_004108731.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Rhodopseudomonas palustris DX-1]
 gi|315601463|gb|ADU43998.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris DX-1]
          Length = 1077

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/692 (10%), Positives = 185/692 (26%), Gaps = 47/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L ++I   GLL      +P   +  +P   P   +                  
Sbjct: 10  RPIFAGVLSALIFLAGLLS-----MPVLPISEYPEVAPPTIV---------VSAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                + ++F      +     V   +  
Sbjct: 56  PKVIAETVSTPIEEQINGVENMLYMSSQATTDGKMTLNVTFRLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T        ++                   +    D++       
Sbjct: 116 AEPRLPAEVRALGITTIKSAPDLTMVVHLMSPNDRYDMTYLRNYAVLNVKDRLARIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   + A +       N        G          Q 
Sbjct: 176 QVQLFGSGDYSMRVWLDPQKVAERGLSPADVVREIRAQNVQAAAGQVGSSPGEPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I  +              I    A      
Sbjct: 236 SVNAQGRLQTEE-------------EFGDIIVKNGDNGEVVRLRDVARIELGAADYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 283 LLNNKSAVAIPIFQSPGSNAIQISDNVRATMKELKQNMPDGVAYDIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++V+ T A++ + G ++   ++ G+V
Sbjct: 343 VIHTLLEAIALVVLVVILFLQTWRASIIPLIAVPVSVVGTFAVMHVFGFSINALTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +      +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIERGLEPKDAAYQAMREVTGPIIAIALVLVAVFVPLAFIT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++        +  +    L    +
Sbjct: 463 GLTGQFYKQFALTVAISTVISAFNSLTLSPALAALLLKGHDAPKDALTKVMDKTLGWFFV 522

Query: 539 AIQFMRAR--------------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                 +R                 +G+++   +        H +  G       Q  V 
Sbjct: 523 RFNRFFSRSSEAYGGGVRRVVSRRALGMTVYLLLVGATFWLFHAVPGGFVPGQDKQYLVG 582

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +  D + +    E ++      Q   G +N +             +    +     + 
Sbjct: 583 FAQLPDGATLDRTEEVIRRMGEIAQQQPGVENSIQFPGLSINGFTNSSNSGIVFIGLKSF 642

Query: 645 IVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
                   +   +   ++++   I+   + + 
Sbjct: 643 DERKDKSLSGNAIAMSLNQKFAGIQDAFIAMF 674



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 78/232 (33%), Gaps = 17/232 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L +     I      G     +    +      +  + + V   I 
Sbjct: 270 RIELGAADYALRSLLNNKSAVAIPIFQSPGSNAIQISDNVRATMKELKQNMPDGVAYDIV 329

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   +    +V ++               W  ++  +  + + 
Sbjct: 330 YDPTQFVRASIEAVIHTLLEAIALVVLVVILFLQT-----------WRASIIPLIAVPVS 378

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T     +FG   N   +  ++  IG  V+D +VV + + +N+      +  +D   +
Sbjct: 379 VVGTFAVMHVFGFSINALTLFGLVLAIGIVVDDAIVVVENVERNI---ERGLEPKDAAYQ 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           ++ E  G  +  ++      +P+A      G     FA+ +A   V++A +S
Sbjct: 436 AMREVTGPIIAIALVLVAVFVPLAFITGLTGQFYKQFALTVAISTVISAFNS 487



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    +   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLSIIMIVPMGLLAAMFGVWISKGDNNVFTQIGLIVLVGLSAKNAILIVEFARELE 961

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                          ++    L   + TSMA  + V+P+      G  +  +  + +  G+
Sbjct: 962  FAGRK---PVQAAIEASRLRLRPILMTSMAFIMGVVPLVTSTGAGSEMRHAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +   +  IF      + + 
Sbjct: 1019 IGVTAFGIFFTPMFYVALR 1037


>gi|317049352|ref|YP_004117000.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Pantoea
           sp. At-9b]
 gi|316950969|gb|ADU70444.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. At-9b]
          Length = 1044

 Score =  183 bits (464), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/622 (11%), Positives = 176/622 (28%), Gaps = 39/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G +  L        ++++P+  P               +      
Sbjct: 8   RPIFAWVIAIIVMLVGAIATL-----NLPVNQYPNISPPAV---------SISVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            +     +    ++  + L        S     + +I  +F      +    +V   +  
Sbjct: 54  AETTQNTVVQVIEQQLNGLDGLRYLESSSASDGSAQIIATFNQGINPDIAQVQVQDRVSL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  D     +     ++  +++             + +  ++ +  D I  +    
Sbjct: 114 AESQLPTDVTDQGIRIRKYQKNFMMVVGLISKDGKLTNGDLADMLVSKLEDPISRTPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    DP++L +     + +S      N        G          Q 
Sbjct: 174 DFMVLGS-EYAMRIWLDPAKLYKYNLMPSDVSTAITNQNVQVSSGSLGGLPTIQGAKTQA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K   +                +    +        +       ++           
Sbjct: 233 TVLGKTRFT-------------TVKQFENVLLKVNSDGSQVRLKDVASVALGPQTYGIDA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L+                     S   
Sbjct: 280 TLNGKPAAGIALRLATGANELNTAKAVRQTIADLKNSLPDNVEVTYPYDTSPVVSASIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+ + +   +  L+    + + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLIEAVILVFFVMLVFLQNLRATLITTLVVPVVLLGTFGILAAFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +      +    +F   +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMHEEKLDPKTATIKSMQQIQGALFGIALVLSAVLLPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+IT+  ++ +S+  A+    A+    ++    +         F    D 
Sbjct: 460 SGSTGVIYRQFSITIVSAMALSVIMALIFTPALCATFLKASSAEHKTTGFAGWFNRKFDS 519

Query: 538 IAIQFMR------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            A+ + R      +R     +  L  +     LFT      +  +    + V    PV+ 
Sbjct: 520 GAMHYTRGVNKVISRRGLFMVVYLVIVGVTGFLFTRVPTTFLPNEDQGLMMVQMTLPVNS 579

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
           S  R+      + D   +N   
Sbjct: 580 SSQRTQQVINDLNDYLQKNEAS 601



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 80/253 (31%), Gaps = 8/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                    +            G   F+ F+G     +      G S  +         + 
Sbjct: 787  FRNTSGTMVPFSAFASGHWVYGSPHFERFNGLTAEEILGSPAAGKSTGEAMKAVEELAQQ 846

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +  +   + +++  + +     +   W      I  + L
Sbjct: 847  LPKGFRVQWYGISYEEQASGNQTAQLYAISILVVFLCLA---ALYESWSIPFSVILVVPL 903

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +  T+    L G++ ++     +LT +G +  + +++ +  ++         S  +   
Sbjct: 904  GVLGTICAVLLRGLQNDVFFQVGLLTTVGLAAKNAILIVEFAKE--LHEREGKSLIEAAV 961

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    +   + TSMA  + VLP+ +    G     S    +A G++ A   +IF     
Sbjct: 962  EAARLRIRPIIMTSMAFILGVLPLTISNGAGAGSQHSIGTAVAGGMITATFLAIFFVPMF 1021

Query: 820  LLFIYDWRAKNAR 832
             + +  + A+  +
Sbjct: 1022 YVVVAQFFARKKK 1034



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 79/237 (33%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V S     Q   I           +        + +   + +      +   +
Sbjct: 258 SQVRLKDVASVALGPQTYGIDATLNGKPAAGIALRLATGANELNTAKAVRQTIADLKNSL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P +           +    I + +  +I + I +   + +  +     L     + + + 
Sbjct: 318 PDNVEVTYPYDTSPVVSASIEEVVKTLIEAVILVFFVMLVFLQNLRATLITTLVVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A FG   N   +  ++  IG  V+D +VV + +     ++   +  +    KS+
Sbjct: 378 GTFGILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMHEEKLDPKTATIKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G     ++     +LPMA + GS       F+I +   + ++   ++     +
Sbjct: 436 QQIQGALFGIALVLSAVLLPMAFFSGSTGVIYRQFSITIVSAMALSVIMALIFTPAL 492


>gi|312171599|emb|CBX79857.1| multidrug efflux transporter [Erwinia amylovora ATCC BAA-2158]
          Length = 1029

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/672 (10%), Positives = 171/672 (25%), Gaps = 43/672 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
              G L  L     +  ++++P+  P                     +   +   +    
Sbjct: 1   MLAGTLSIL-----KLPIEQYPNVAPPAIE---------ITATYPGADAKTLQDSVTQVI 46

Query: 75  DELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           ++  + +        S       ++TL+F      +    +V   LQ     L  + ++ 
Sbjct: 47  EQNMNGIDGLMYMGSSSDSSGTLQLTLTFESGTDADIAQVQVQNKLQLATPLLPQEVQQQ 106

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +         ++++    D       + S  +     D +                  +
Sbjct: 107 GISVQKSSSSFLMVAGFINDSGTMTQNDISDYVGSNIKDPLSRVSGVGDTQLFGAQ-YAM 165

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP +L     T   +       N        G             +  +  ++   
Sbjct: 166 RIWMDPHKLNNYQLTPVDVISAINTQNAQVAAGQLGGSPPVKGQQLNASIIAQTRLTSTE 225

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                        +    +        R       +I                  +    
Sbjct: 226 -------------EFGKILLKVNADGSRVRLSDVAHIELGGENYEVIARYNGQPASGLGI 272

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
                 +   T          L          +           S +    T      LV
Sbjct: 273 KLATGANALDTAAAVKAELGKLEPFFPSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLV 332

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
            +V+++ +   +  L+   ++ + ++ T A++S  G ++   ++ G+VL IGL VD  I+
Sbjct: 333 FLVMYLFLQNFRATLIPTIAVPVVLLGTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIV 392

Query: 434 VNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           V E +      +  S   +      +    +    +      + + FFGG      R F+
Sbjct: 393 VVENVERVMAEEGLSPKEATRKSMDQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFS 452

Query: 490 ITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIA 539
           IT+  ++++S+  A+ +  A+   +                   +           D + 
Sbjct: 453 ITIVSAMVLSVIVALILTPALCATMLKPINKGDHGKTTGFFGWFNRLFDKSTHHYTDSVG 512

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                   + V   ++    +   L         + +G                 +  L+
Sbjct: 513 HIVRSTGRYLVIYLLIVVGMAFLFLRLPTSFLPEEDQGVFLTMAQLPAGATQERTQKVLD 572

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +    ++ +  +    F V      G           +K         + +        
Sbjct: 573 QVTDYYLNKEKTNVNSVFTVNGFGFAGRGQNTGLAFVSLKPWDERSGAENKVPAITGRAM 632

Query: 660 KISRELIRKGIV 671
                +    ++
Sbjct: 633 GALSAIKDAMVI 644



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 89/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       +  ++  +      + L        +++     ++    K+    
Sbjct: 239 SRVRLSDVAHIELGGENYEVIARYNGQPASGLGIKLATGANALDTAAAVKAELGKLEPFF 298

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + + + + +++  + +   L     + + + 
Sbjct: 299 PSGLKVVYPYDTTPFVKISINEVVKTLVEAIVLVFLVMYLFLQNFRATLIPTIAVPVVLL 358

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    + FG   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 359 GTFAIISAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKSM 416

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +PMA +GGS       F+I +   +V++   ++ +   +
Sbjct: 417 DQIQGALVGIALVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMVLSVIVALILTPAL 473



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 7/193 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
           G   A     E +         L T    +  G      L       +  IS I + + +
Sbjct: 809 GQPAAGKSSGEAMNLMQELASKLPTGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCL 868

Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              ++ W      +  + L +   L F  L G+  ++  V  +LT IG S  + +++ + 
Sbjct: 869 AALYESWSIPFAVMLVVPLGVIGALIFTTLRGLSNDVYFVVGLLTTIGLSAKNAILIVEF 928

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
            +  M+         +   +++   L   + TS+A  + VLP+A+    G     +    
Sbjct: 929 AKDLMEKEGKG--LVEATLEAVRMRLRPILMTSLAFILGVLPLAISSGAGSGAQNAVGTG 986

Query: 801 MAFGIVVAASSSI 813
           +  G+V A   +I
Sbjct: 987 VMGGMVTATVLAI 999


>gi|308050491|ref|YP_003914057.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ferrimonas balearica DSM 9799]
 gi|307632681|gb|ADN76983.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ferrimonas balearica DSM 9799]
          Length = 1045

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/680 (11%), Positives = 183/680 (26%), Gaps = 39/680 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  ++  +GL+      +    ++ FP   P                +     
Sbjct: 9   RPKFAIVIALVMVLVGLIA-----MRTMPVNEFPRITPPVVQ---------VSAMYPGSN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
            + V   L    +E  + ++                + ++F      +     V   +  
Sbjct: 55  AEVVEQTLAQPIEEAVNGVENMLYMRSRSANDGGYFLEVTFDIGTDPDMATVLVQNRVNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  +  + +    ++             I  +  +     +Q+       
Sbjct: 115 ATPRLPADVRERGIKVSKKSPDLLMAMTVYSPNETHDDIFLTNYVALNLEEQLKRIPGIS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP RL Q   TT  +       N        G     D      
Sbjct: 175 DVSLLGGARYSMRVWLDPERLAQYGLTTTDVYGALAEQNVVMPAGRIGGAPDLDQPAMTI 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +   E      +      +     +     
Sbjct: 235 PLVTQGRL-------------KTVDEFEHVVVRAESDGSTLYLKDVAQVDLGKEMYDFEA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                +      S +   +   T +      A             +          S + 
Sbjct: 282 TRNGQLAAMLSLSLQPDANALETGQQVKAFLASAAEQFPEDMAYDIVYDTTVFVEESIAS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+ V ++ +   +   V   +I +++I T A +  +G T+   ++ G++
Sbjct: 342 VLETLIQAVLLVVAVTYLFLGSMRATAVPLVAIPVSLIGTFAFMLSMGFTINTVTLFGLI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVV--- 476
           L IG+ VD  ILV E +    R+N   S   +  +        I  S +  L   +    
Sbjct: 402 LAIGIVVDDAILVIENVERNMRENPTISGAEATIIAMKEVTGPIITSTLVLLAVFIPVSL 461

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRF 531
           L    G     FA+T+ +S+++S   A+++  A+   +        +  ++ +       
Sbjct: 462 LPGITGEMYAQFAVTIVISVVLSSVNALTLSPALCAMLLKPGQSGPRWYQAFNRGFERLT 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                  A    ++       +   ++ ++            + KG + + V       L
Sbjct: 522 ERYGRVAATLVRKSGLLLGLFAAALALLALITPSIPTGFVPEEDKGMMLVNVQLPDGASL 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFL-VRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  + ++   +S+   D         L      S   T  + +      +      
Sbjct: 582 RRTMEVSDDIEAVLMSYPEVDAVGAARGFGLLSFSLQSNTSTFFVRLYDWADRDAGLSEI 641

Query: 651 IQNTEIVGPKISRELIRKGI 670
                +       +      
Sbjct: 642 THRLNVWAATQYHDAQVMAF 661



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 79/203 (38%), Gaps = 7/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    L    ++  E +    + +T +   +    ++   I  V++      +++ 
Sbjct: 303 ETGQQVKAFLASAAEQFPEDMAYDIVYDTTVFVEESIASVLETLIQAVLLVVAVTYLFLG 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                      +  + + +  T  F    G   N   +  ++  IG  V+D ++V + + 
Sbjct: 363 ---SMRATAVPLVAIPVSLIGTFAFMLSMGFTINTVTLFGLILAIGIVVDDAILVIENVE 419

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +NM+   T IS  +    ++ E  G  + +++      +P+++     G +   FA+ + 
Sbjct: 420 RNMRENPT-ISGAEATIIAMKEVTGPIITSTLVLLAVFIPVSLLPGITGEMYAQFAVTIV 478

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             +V+++ +++ ++  +   +  
Sbjct: 479 ISVVLSSVNALTLSPALCAMLLK 501



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 54/167 (32%), Gaps = 6/167 (3%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             I    ++ + + +++  +++ W      I  + + +   L       +  NL A   ++
Sbjct: 868  AIYAFALALLFIYLFMVAQYESWTMPTAIILVVPMAVLGALMALKAMALPLNLYAQMGLV 927

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM- 786
             LI  +  + +++ +  R  +K      S  D   ++          TS +    ++PM 
Sbjct: 928  LLIALAAKNAILIVEFAR--LKREEEGRSIDDAAVEAGKLRFRAVNMTSWSFICGMIPMV 985

Query: 787  AVWGGSVIG--SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G   I   S    +  G+                     R + A
Sbjct: 986  LASGAGEISQWSLGWTLLGGLTCVLIVGTCFIPGFFALFQRLRERTA 1032


>gi|253998868|ref|YP_003050931.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylovorus sp. SIP3-4]
 gi|253985547|gb|ACT50404.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylovorus sp. SIP3-4]
          Length = 1040

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/679 (10%), Positives = 175/679 (25%), Gaps = 39/679 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL            L+++P   P              +       
Sbjct: 8   RPIFAWVIAIVIMLAGLAAI-----ETLPLEQYPDIAPPRV---------SINATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++    +        +       ++L+F      +    +V   LQ  
Sbjct: 54  AKTIEDSVTQIIEQYMKGIDNLTYMASTSSSSSASVSLTFDAGTDPDVAQMQVQNKLQQA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    +   +         +++     D       +    I    +DQI   +    
Sbjct: 114 LPRLPQIVQSLGVTVNKTGTDFLMVMSIYSDDPKVTTTDIGDYISSSLLDQISRVDGVGD 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                          +P +L++     + ++      N        G             
Sbjct: 174 VQTMGSGYSM-RIWLNPEKLQKYALIPSDITSAVEAQNTEVSSGQLGALPAVGQQQLNAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  +                    +    +                 +            
Sbjct: 233 ITARS-------------KMQTVAQFRNIVVKSAADGSVVHLGDVARVELGSENYAIAGR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP--IKLNIVEERNVGADLGSDS 360
                         +  +   T E        L             V          S  
Sbjct: 280 YNGKPAAGMGVKLASGANALKTSEAVLAKVKELEPYFPASLKLKTAVTYDTTPFVRISIK 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +      LV++++++ +   +  ++   ++ + ++ T  +L+  G ++   ++ G+
Sbjct: 340 EVVKSLFEAVLLVVLIMYIFLQSWRATIIPAVAVPVVLLGTFGILAAFGYSINTLTMFGL 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +      +  S   +           +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERVMREQGLSAREATRKSMDEITGALIGIALVLSAVFIPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   +++  +                 
Sbjct: 460 FGGSTGVIYRQFSITIVSAMLLSVLVALTLTPALCATVLKPGEHAPRRGFFGWFNRNFDR 519

Query: 537 CIAIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                         R     +     +  + +L+       I  +    L      PV  
Sbjct: 520 GSKAYHGGVQGILKRKALAMLVYAAIVGVMAVLYVRLPTSFIPTEDQGVLMAQVQLPVGA 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +  R      Q+ +   +  D     +       G+S    R+   +K       P  + 
Sbjct: 580 TDQRLQKVMDQVQEYLLKEPDIVAINIFTGLGVSGNSQNTGRIFIRLKDWDERTGPGQSS 639

Query: 652 QNTEIVGPKISRELIRKGI 670
                   +   ++    I
Sbjct: 640 AEIADKATRALGKIRDATI 658



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 5/148 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              + +LI       W   +     + + +  T G  A FG   N   +  ++  IG  V
Sbjct: 348 AVLLVVLIMYIFLQSWRATIIPAVAVPVVLLGTFGILAAFGYSINTLTMFGLVLAIGLLV 407

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +VV + +     +    +S R+   KS++E  G  +  ++      +PMA +GGS  
Sbjct: 408 DDAIVVVENV--ERVMREQGLSAREATRKSMDEITGALIGIALVLSAVFIPMAFFGGSTG 465

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPI 819
                F+I +   ++++   ++ +   +
Sbjct: 466 VIYRQFSITIVSAMLLSVLVALTLTPAL 493



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 83/262 (31%), Gaps = 11/262 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G   +    N  V  S       +     +S  N       +         
Sbjct: 772  PYRMLPENIGQWYVRNANNDMVPFSSFSQGNWTYGSPQLSRFNGISSIELVGESSPGASS 831

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                  V  M+K+  T I      Q+ +         +    +  V +  +  L    + 
Sbjct: 832  GDVMDSVENMMKQMPTGIGYEWAAQSYQERLSGSQAPM----LYAVSVVFVF-LCLAALY 886

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L I   L    L G+  ++     +LT +G +  + +++ +  +  
Sbjct: 887  ESWAVPFSVMLVVPLGILGALLATTLRGLSGDVYFQVGLLTTVGLAAKNAILIVEFAK-- 944

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFG 804
              L    +S  +   +++ + L   + TS+A    VLP+A   G+      +    +  G
Sbjct: 945  -HLQEQGLSLMEATLQAVQQRLRPILMTSLAFIFGVLPLAASSGAGAASRQAIGTGVLGG 1003

Query: 805  IVVAASSSIFIAAPILLFIYDW 826
            ++ A    IF      + +  W
Sbjct: 1004 MLTATLLGIFFVPLFFVLVRGW 1025


>gi|146329406|ref|YP_001208976.1| preprotein translocase, SecD subunit [Dichelobacter nodosus
           VCS1703A]
 gi|146232876|gb|ABQ13854.1| preprotein translocase, SecD subunit [Dichelobacter nodosus
           VCS1703A]
          Length = 621

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 172/531 (32%), Positives = 274/531 (51%), Gaps = 42/531 (7%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  ++L   P  M     +  +LGLDLRGG   +L+VD  + +        D LR+ L++
Sbjct: 99  ISVNLLANTPRWMQALGLDPANLGLDLRGGVSFLLQVDSKELLERRSAELLDTLRATLQE 158

Query: 84  EGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           + +    +         + F     + N  + +        S+L    ++       +  
Sbjct: 159 KSLPHIRLENADNGGALVWFQSQEERANALETL-------YSRLPKGVQQFDAERDGQFG 211

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           +  V S+  I+     A +Q+   +  R++ +G++E ++Q +G+ RILIQLPG QD S+ 
Sbjct: 212 LRFVYSEEAINAAKRRAADQNRMRMASRVNSLGVAEPSVQVVGNDRILIQLPGIQDVSKA 271

Query: 203 RQLLGTTAKMSFHKVLPNNSKKG---------FMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           +++LG+TA + F+ V    +              FG +     DG   L++ +V +SG H
Sbjct: 272 KEILGSTATLEFYMVDDKATPADIANAVRLKRPPFGDKLGFFEDGTPILLKRRVVMSGDH 331

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR------------ 301
           +  A+A +     +P V++  D  G     E+TR+NIGKP+A +                
Sbjct: 332 IIDASAVYGQG--QPQVNVVLDSAGGATMSEITRNNIGKPMATMYVEYLPVEKTDAAGET 389

Query: 302 --------VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                    +      Q   S   QI+G    E A  LAA LRAGSL   + I+EER +G
Sbjct: 390 QTDVEKRETVANSATIQGQFSSNFQITGVTPFERAQKLAATLRAGSLIAPVYIIEERTIG 449

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
              G  +I +G  A + GL  I +FM+V Y K G  +  ++  N+IL +A +SLLGATLT
Sbjct: 450 PSAGQQNIDQGVHASLLGLFAIAVFMLVYYNKLGFYSVIALTFNLILLIASISLLGATLT 509

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL +G+AVD+N+L+ ERIREE   ++ +  S+ MGF+ A S+I D+NIT LI 
Sbjct: 510 LPGIAGIVLTLGMAVDANVLIYERIREELAADRPIKESIRMGFNGALSSIVDANITTLIV 569

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            V+LF FG G ++GFA+T+ + I+ SMFTA+ + RA+  F +  +   +I 
Sbjct: 570 GVLLFIFGAGPIKGFAVTLSVGIMTSMFTAVYVTRALTEFFLLRQAQPTIK 620



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 81/175 (46%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP   ++ I +G+   ++   A+ +++ + +       ++  L  ++   +   +L G
Sbjct: 447 TIGPSAGQQNIDQGVHASLLGLFAIAVFMLVYYN-KLGFYSVIALTFNLILLIASISLLG 505

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++Y+R+R+ +         ++ I    N  L   V  
Sbjct: 506 ATLTLPGIAGIVLTLGMAVDANVLIYERIREELAADR---PIKESIRMGFNGALSSIVDA 562

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++   I  + + ++G   I  FA+ ++ GI+ +  +++++   +  F    +A+ 
Sbjct: 563 NITTLIVGVLLFIFGAGPIKGFAVTLSVGIMTSMFTAVYVTRALTEFFLLRQAQP 617


>gi|53803797|ref|YP_114557.1| AcrB/AcrD/AcrF family protein [Methylococcus capsulatus str. Bath]
 gi|53757558|gb|AAU91849.1| AcrB/AcrD/AcrF family protein [Methylococcus capsulatus str. Bath]
          Length = 1024

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/516 (12%), Positives = 149/516 (28%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +  +GL+        +  +  +P+                   V +  
Sbjct: 9   RRPVLATVMSLALVLVGLM-----CFQRLPVREYPNIDAPVV---------SVRSVYKGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S ++         R+  ++ITL F  SR +++ A  V   +  
Sbjct: 55  SSEVIESQVTRPLEDSLSGIEGIRTMKSVSREEVSQITLEFNVSRDQDSAAADVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  +  + ++         I+    + D      +E +    R   D++       
Sbjct: 115 VRARLPREMDEPVISKIEADAQPILWLAFSSD--RHSPLEITDFADRYVQDRLQTLPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    +  R+     T   +                             
Sbjct: 173 SVIIGGERRYAMRLWLNRERMAAHGVTVQDVEAAL--------------------QKRNV 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +      S        +  D KT +    +   E+                 A   +  
Sbjct: 213 ELPGGRIESAQREFTVFSETDLKTVEEFNALIVREVNGFLVRLSDIGRAELGAADERNIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +A  +      +       +           V          S   
Sbjct: 273 RVNGNPAVALGVVKQATANTLEVARSVRAELPKILQTLPDGMTLEVSFDTSQFIDESIHS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A   GLV +V +  +   +  L+   +I +++I     +  LG ++ + ++  +V
Sbjct: 333 VYKTLAESLGLVTLVTWSFLRSARATLIPFVTIPVSLIGAFIFIYALGFSVNILTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I            +   G       +    +T       L F  
Sbjct: 393 LAIGLVVDDAIVMMENIYRRIEGGTPPLRAAVEGSREIAFAVIAMTLTLASVFAPLAFMS 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFI 514
           G   R    FA+ +  ++L+S F A+++   M   +
Sbjct: 453 GNTGRLFSEFALAVSCAVLVSGFVALTLTPMMCSRL 488



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS +              +        L  ++    +++   R +     KI + +P 
Sbjct: 253 VRLSDIGRAELGAADERNIVRVNGNPAVALGVVKQATANTLEVARSVRAELPKILQTLPD 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKT 707
                      +   E I      +  S   + +  W         L    T+ + +   
Sbjct: 313 GMTLEVSFDTSQFIDESIHSVYKTLAESLGLVTLVTWSFLRSARATLIPFVTIPVSLIGA 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             F    G   N+  + A++  IG  V+D +V+ + +    +             +   E
Sbjct: 373 FIFIYALGFSVNILTLLALVLAIGLVVDDAIVMMENI---YRRIEGGTPPLRAAVEGSRE 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
                +  ++       P+A   G+       FA+ ++  ++V+   ++ +  
Sbjct: 430 IAFAVIAMTLTLASVFAPLAFMSGNTGRLFSEFALAVSCAVLVSGFVALTLTP 482



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 59/157 (37%), Gaps = 9/157 (5%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA--LFGIEFNLTAVAAVLTLIG 731
            + + + + + +  +F+  F+   I  L + +  T    +    G   N+ +   ++ LIG
Sbjct: 856  VFALLFIYLVLAAQFE-SFSDPFIIMLTVPLAVTGALLSLKWTGGTLNVYSQIGMIMLIG 914

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                + +++ +      +L        + + ++        + TS+   +  LP+A+   
Sbjct: 915  LVTKNGILIVEFAN---QLQRAGRGLVEAVVEASVLRFRPILMTSLTMILGALPLALSSG 971

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             G          +  G+++    ++F+   +   +  
Sbjct: 972  AGAESRQQIGWVIVGGLLIGTVFTVFVIPAVYTLLAK 1008


>gi|84569893|gb|ABC59230.1| CmeB [Campylobacter coli]
          Length = 1040

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/683 (11%), Positives = 187/683 (27%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLVNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +        +T+ F      +     V   +  
Sbjct: 55  AQTIATTVANPIEDAINGADNMIYMDSTSSSSGTMNLTVYFNIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+  + KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDEVKKLGVTVRKTSSTTLAAISMYSSNGSMSAVDVYNYITLNILDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGATATDVIAAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QSPSEFENIILRTNEDGSFLRLKDVADVEIGSQQYKSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T +        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKSFPEGLEYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L LLG ++ L ++  ++
Sbjct: 342 VIKTFVEALILVIIVMYMFLKNFRSTLIPMIAVPVSLLGTFAGLYLLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +++       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHEDEKISVKDAAIQAMQEVSSPVISIVLVLCAVFIPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  + +          F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 537 CIAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    ++  R     +     + +I  L+    N  +  +    L +        S
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPN-SLVPEEDQSLMISIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
                  K          V + +
Sbjct: 641 QIIAELNKKFAFDRNASSVFIGL 663



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 91/244 (37%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++   +++E   +++++  P     
Sbjct: 266 DVADVEIGSQQYKSQGRLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKSFPEGLEY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ I   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVIKTFVEALILVIIVMYMFLKNFRSTLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YLLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHEDEK-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + +       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFIPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 85/255 (33%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ ++ +++  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNIFPAAQIQGQPAPGYTSGQAIEAISQVAQETLSDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +               G     +  + + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TGSYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       D   ++ 
Sbjct: 906  GSFLLVYLRGFTNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKKIFDAAIEAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   V TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIVMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|146310742|ref|YP_001175816.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Enterobacter
           sp. 638]
 gi|145317618|gb|ABP59765.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter sp. 638]
          Length = 1032

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/528 (11%), Positives = 155/528 (29%), Gaps = 39/528 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   KRPRFAMVIALVITLLGAIA-----LKLIPVEQYPQITPPV-------------VNVSAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   + +  +  L + +           +        + ++FA     +  A  V 
Sbjct: 49  WPGASAADVAEAIATPLETQINGVDHMLYMESTSSDEGAYSLNITFAAGTDADLAAIDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    ++L  D ++N +         ++       +     +  S     Q  + +  
Sbjct: 109 NRVAQAVAQLPADAQQNGVQVRKRATNLMMGVSLYSPEQTHSPLFVSNYASTQIREALAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q          +     P R+  L  TT  +S      N        G   + + 
Sbjct: 169 LPGVGQVQIFGARDFSMRIWLRPDRMNALNVTTDDISQALREQNVQGAAGQVGTPPVFNG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     ++                     I       +        NI      
Sbjct: 229 QQQTLTINGLGRLNEAD-------------AFGDIIIRAGEMGQLVRLKDVANIELGSRS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G  L                +     E        L A         V+        
Sbjct: 276 YSSGAQLNGHDSAYLGIYPTPSANALRVAEAVRGELERLSARFPADLTYEVKFDTTEFVA 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      + A+    V++++ + +   +  L+   +I +++I T A+L  LG +    S
Sbjct: 336 ATIKEIGVSLALTLLAVVVIVSLFLQSWRATLIVAIAIPVSLIGTFAVLYALGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  I+L + + VD  I+V E +     + QS   +  +   +    +  + +  L   + 
Sbjct: 396 LFAIILALTMVVDDAIVVVENVETLMAEGQSRTAATALALRQIAGPVIATTLVLLAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           +       G   R FA+T+  ++ +S   A+++  A+   ++R +  +
Sbjct: 456 VALLPGIVGELYRQFAVTLSTAVTLSSLVALTLTPALCAMLLRPRPAR 503



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/433 (9%), Positives = 118/433 (27%), Gaps = 19/433 (4%)

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
                    I +     ++     N        K+ S    LD         +       +
Sbjct: 595  ANPAVADVIQVSGFNLLNGTSASNGGFISVMLKDWSERPPLDEVMGTLQRQLLALPEATI 654

Query: 472  IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
            +        G G   GF + +      S      + R ++    ++ ++  +     S  
Sbjct: 655  MTFAPPTLPGLGNASGFDLRIQAQAGQSPADLERVTREVLAKANQHPQLSRVFTTWSSNV 714

Query: 532  F------------LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                          +   ++  F   +    G        +  +      N     +   
Sbjct: 715  PQLTLSVDRERAARLDVPVSRIFSSLQTAFGGTRAGDFSINNRVYHVVMQNEMQWRERAE 774

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            Q+  L  R  +   VR +        +          F              +       
Sbjct: 775  QISELYVRSNNGERVRLSNLVTITPTVGAPFLQQYNQFPSVSVSGSAAPGVSSSTAMAAM 834

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
             ++      +             ++   + +  V+ + +   +++  +++ W      + 
Sbjct: 835  GQLLVDNLPAGYDYAWSGMSYQEQQTGNQAVWIVLAAVVMAWLFLVAQYESWTLPASVML 894

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            +++  I   L +  + G   ++     ++ LI  +  + +++ +  R         ++  
Sbjct: 895  SVLFAIGGALTWLWMAGYANDVYVQIGLVLLIALAAKNAILIVEFAR---ARRNEGMAIV 951

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            D   +  +      + T+++  I VLPM +    G          +  G++VA    I  
Sbjct: 952  DAAREGASRRFRAVMMTAVSFIIGVLPMMLATGAGAQSRRIIGTTVFSGMLVATVVGIVF 1011

Query: 816  AAPILLFIYDWRA 828
               + +     R 
Sbjct: 1012 IPALFVLFQRLRE 1024



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 89/248 (35%), Gaps = 7/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + V L  V +     +      Q    +  +L        +++     +    ++++
Sbjct: 256 EMGQLVRLKDVANIELGSRSYSSGAQLNGHDSAYLGIYPTPSANALRVAEAVRGELERLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P       +    +     I++  V + ++ +A+++ + +    W   L     + +
Sbjct: 316 ARFPADLTYEVKFDTTEFVAATIKEIGVSLALTLLAVVVIVSLFLQSWRATLIVAIAIPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N  ++ A++  +   V+D +VV + +     L     S      
Sbjct: 376 SLIGTFAVLYALGYSANTLSLFAIILALTMVVDDAIVVVENV---ETLMAEGQSRTAATA 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++ +  G  + T++      +P+A+     G +   FA+ ++  + +++  ++ +   +
Sbjct: 433 LALRQIAGPVIATTLVLLAVFIPVALLPGIVGELYRQFAVTLSTAVTLSSLVALTLTPAL 492

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 493 CAMLLRPR 500


>gi|320353349|ref|YP_004194688.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Desulfobulbus propionicus DSM 2032]
 gi|320121851|gb|ADW17397.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfobulbus propionicus DSM 2032]
          Length = 1053

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/684 (12%), Positives = 183/684 (26%), Gaps = 32/684 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  ++  +GL+      +      +FP+ +P   I +     G   L LE   
Sbjct: 8   RPIVAMVLSILMVIVGLVA-----MSGLPTAQFPNIVPP-EIKVSTTYTGADALTLEQAV 61

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVF-SMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +        S +         +    + K+T++F              +    
Sbjct: 62  ATPIEQEM--------SGVDNMNYMYSINANNGETKLTVNFDIKTDTNTDQLLAQMRKGQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  D +   +         +++            +  +        DQ+       
Sbjct: 114 AESQLPSDVRNYGVKVEKSTSSPLIMFGLYSPNGTYDNVFLANYCYININDQMTRIPGIA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L +L  T  ++       N        G   +       Y
Sbjct: 174 SVTIFGAGKYAMRLWVKPDQLAKLNITIPEIVNAINAQNTVNPAGQVGAEPVPTGQEFTY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                      +                 I           
Sbjct: 234 AVRAQGRLQSEA-------------DFGRVVLRANPDGSIVRVSDVARIELGAQTYSLEG 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     + A  L   L+    P    +V      A       
Sbjct: 281 RLNGKPSALIALYQMPGSNAVEAAKGARELMEQLKQRFPPDLDYVVSLDTTLAVTEGIKE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+IV+F+ +   +  L+   ++ ++++ T     L G ++   S+ G+V
Sbjct: 341 IEHTLFEALVLVIIVVFIFLQGWRATLIPLLAVPVSLVGTFMFFPLFGFSINTLSLFGLV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +        S   +           +    I      V   F  
Sbjct: 401 LAIGLVVDDAIVVVEAVEHHIEHGLSPKEATFKAMEEVSGPVIAIAIILAAVFVPTAFIP 460

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID-INPLSRFFLIPDC 537
              G   + FA+T+ LS++IS F A+++  A+   +++ K             F  +   
Sbjct: 461 GITGRLYQQFALTIALSVIISAFNALTLSPALCALLLKPKVKGRGPLQKFYDWFNRVFGR 520

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               ++      V  S +  +  + ++   G        G +           + +  + 
Sbjct: 521 ATDGYVGLCRVAVHKSAISLLFLVGMVVLTGFFGKTVPSGFLPEEDQGYVFAGIQLPDAA 580

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
                            +   V+           ++V           +     +    V
Sbjct: 581 SLQRTRDLTEQAEKLIMETPGVKYTTSVIGYSMLSQVTNTYSAFFFITLDDWAARKEPAV 640

Query: 658 GPKISRELIRKGIVGVIISAIAML 681
             +  ++ + K +  +  +     
Sbjct: 641 QYEAIKQTLNKKLGSLSGAIGFAF 664



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 85/200 (42%), Gaps = 9/200 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            ++E +K++    +      +T +   +  +E+       +++  I + I++     W  
Sbjct: 309 ELMEQLKQRFPPDLDYVVSLDTTLAVTEGIKEIEHTLFEALVLVIIVVFIFLQ---GWRA 365

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  +  + + +  T  FF LFG   N  ++  ++  IG  V+D +VV + +        
Sbjct: 366 TLIPLLAVPVSLVGTFMFFPLFGFSINTLSLFGLVLAIGLVVDDAIVVVEAV---EHHIE 422

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAA 809
             +S ++   K++ E  G  +  ++      +P A   G        FA+ +A  ++++A
Sbjct: 423 HGLSPKEATFKAMEEVSGPVIAIAIILAAVFVPTAFIPGITGRLYQQFALTIALSVIISA 482

Query: 810 SSSIFIAAPILLFIYDWRAK 829
            +++ ++  +   +   + K
Sbjct: 483 FNALTLSPALCALLLKPKVK 502



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 69/193 (35%), Gaps = 10/193 (5%)

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVII---SAIAMLIYIWIRFK-WYFALGAITTL 700
               + +    + +G        +KG+  V+I   S + + + +  +++ W      +   
Sbjct: 846  AETMPSEMGYDYMGMSFQEWQAQKGVSPVVIFGFSLLCVFLILAAQYESWSLPFSVLLGT 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             + +    G   L G E N+ A   ++ LIG S  + +++ +  +     Y       + 
Sbjct: 906  PIAVAGAFGALFLRGQENNVYAQIGLVMLIGLSAKNAILIVEFAK---MEYEKGRPLLEA 962

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFGIVVAASSSIFIAA 817
              +     L   + TS A  +  +P+A+  G   I        +  G++ A    +F+  
Sbjct: 963  TLEGAKLRLRPILMTSFAFILGCVPLAIASGAGAISRQVMGNAVIGGMLAATCIGVFLIP 1022

Query: 818  PILLFIYDWRAKN 830
                 +     + 
Sbjct: 1023 VTFYVVEKLGHRP 1035


>gi|225423371|gb|ACN91197.1| CmeB [Campylobacter coli]
          Length = 1040

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 187/683 (27%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLVNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +        +T+ F      +     V   +  
Sbjct: 55  AQTIATTVANPIEDAINGADNMIYMDSTSSSSGTMNLTVYFNIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+  + KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDEVKKLGVTVRKTSSTTLAAISMYSSNGSMSAVDVYNYITLNILDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGATATDVIAAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QSPSEFENIILRTNEDGSFLRLKDVADVEIGSQQYKSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T +        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKSFPEGLEYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L LLG ++ L ++  ++
Sbjct: 342 VIKTFVEALILVIIVMYMFLKNFRSTLIPMIAVPVSLLGTFAGLYLLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +++       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHEDEKISVKDAAIQAMQEVSSPVISIVLVLCAVFIPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   + FA+T+ +S+ IS F A+++  ++    +R  + +          F    
Sbjct: 462 ISGFVGEIQKQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 537 CIAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    ++  R     +     + +I  L+    N  +  +    L +        S
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPN-SLVPEEDQSLMISIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
                  K          V + +
Sbjct: 641 QIIAELNKKFAFDRNASSVFIGL 663



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 91/244 (37%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++   +++E   +++++  P     
Sbjct: 266 DVADVEIGSQQYKSQGRLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKSFPEGLEY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ I   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVIKTFVEALILVIIVMYMFLKNFRSTLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YLLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHEDEK-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + +       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFIPVSFISGFVGEIQKQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 85/255 (33%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ ++ +++  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNIFPAAQIQGQPAPGYTSGQAIEAISQVAQETLSDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +               G     +  + + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TGSYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       D   ++ 
Sbjct: 906  GSFLLVYLRGFTNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKKIFDAAIEAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   V TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIVMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|317182766|dbj|BAJ60550.1| preprotein translocase subunit SecF [Helicobacter pylori F57]
          Length = 323

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQIRILNFMRYSNYGVIVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEMLI--KFPFVETAENEDLNAIVVNILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|119505402|ref|ZP_01627476.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [marine gamma proteobacterium
           HTCC2080]
 gi|119458857|gb|EAW39958.1| preprotein translocase, auxillary membrane component (General
           Secretory Pathway) [marine gamma proteobacterium
           HTCC2080]
          Length = 304

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 95/292 (32%), Positives = 161/292 (55%), Gaps = 5/292 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              + FM  R +  G S++  + +   L T  LN+G+DF GG  + V      +L  VR 
Sbjct: 1   MKILPFMAWRRFAAGFSLIAMLIAGGALTTQSLNWGLDFTGGTLVEVEYGDTANLREVRK 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            LE      +    F  +++ L+RL     D       + MV            ++  E 
Sbjct: 61  ILEDSGYAGVVVVAFGTDRDVLIRLPINYSDEQG----VAMVDVLRRASSSPIELRRMEF 116

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP +  EL  +G + ++++   +++Y+  RF++ FA+GA+  L  D+   LGFF+L G+
Sbjct: 117 VGPAVGEELREQGGLAMLLALGLVMLYVGFRFQFKFAVGAVMALAHDVLFVLGFFSLLGL 176

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EF+LT +AA+L +IGYS+ND +VV DR+R+N +    S S  ++ID S+ ETLGR++ TS
Sbjct: 177 EFDLTVLAAILAVIGYSLNDTIVVADRIRENFRKLRRSNST-EVIDISLTETLGRTLVTS 235

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   + +L +A++GG +I  FA+ +  G+ +   SSI+++A ILL +   + 
Sbjct: 236 LTTLLVLLALAIFGGEMIHGFALALLAGVAIGTYSSIYVSATILLAMGVSKE 287


>gi|113969360|ref|YP_733153.1| preprotein translocase subunit SecF [Shewanella sp. MR-4]
 gi|113884044|gb|ABI38096.1| protein-export membrane protein SecF [Shewanella sp. MR-4]
          Length = 294

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 150/288 (52%), Gaps = 9/288 (3%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +   + R+    IS+   + S+ ++   G N+G+DF GG+   V  +R +  S ++ 
Sbjct: 1   MKNLNLTKWRYVSSAISLFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQP 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +    +++  +      +++R       +V     L  + +          + NT I
Sbjct: 61  LLNAAYQQEVTVISASEPGRWVLRYADTAQSNVNIQETLAPLGEV--------QVLNTSI 112

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++ +EL  +G + ++++ + +L Y+  RF+W  A GA+  L+ D+   L FF+L  +
Sbjct: 113 VGPQVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFSLTQM 172

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT +AAVL ++GYS+ND +++ DR+R+ +      ++ +++ +++I  T  R++ TS
Sbjct: 173 EFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPK-LAIQEINNQAIVATFSRTMVTS 231

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               ++V  + + GG  +  F+I M  GI+    SSI +   +  F+ 
Sbjct: 232 GTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLG 279


>gi|317179743|dbj|BAJ57531.1| preprotein translocase subunit SecF [Helicobacter pylori F30]
          Length = 323

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +    ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVIVSAILVFLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR+  E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRNLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ + L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEI-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|52842720|ref|YP_096519.1| RND multidrug efflux transporter MexF [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52629831|gb|AAU28572.1| RND multidrug efflux transporter MexF [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 1050

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 68/588 (11%), Positives = 150/588 (25%), Gaps = 28/588 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  IG++           + ++P+ +P               + +    
Sbjct: 9   RPVLANVIALFIVFIGIIAIAV-----LPVSQYPAIVPPT-------------IQVTTTY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L       +   +           +        + ++FA           V  
Sbjct: 51  PGADAKTLINTVALPIEQQVNGVEDMLYMQSTSTSGGTYTLIVTFAIGTDLNYAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   ++L    +K  ++   +    +              +           D++   
Sbjct: 111 RVQAAMAQLPESVQKQGVIVQQKSTAILQFITLTSKNNEYDGVFLDSYATINMQDELSRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP ++       + +       N        G        
Sbjct: 171 PGVGNVVVFGSGSYAMRVWLDPKKMLAFSLNPSDVLNAISYQNKEVSAGQLGAPPTVGKQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V    ++S              T       +      +         +       
Sbjct: 231 AYQFTVNVPGQLSDPKEFENIIIKTIDTPPDQNSSASSSA--QVVRIRDVGRVELGSESY 288

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A +     P     +          
Sbjct: 289 NQLANLNGKPTAAIGIFQLPGANALDVAQEVRKAVAKMAKQFPPGLEYSIPFDTTVFVKA 348

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+ + +   +  LV   ++ + +I T   + LLG ++ L ++
Sbjct: 349 SIEEVYKTLFEAGILVLIVIVVFLQNFRASLVPATTVPVTIIGTFFAMLLLGYSINLLTL 408

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IG+ VD  I++ E + +   K  S   S  +     +  I    +  +   V  
Sbjct: 409 FALVLAIGIVVDDAIVIVEGVTQHIEKGLSPKESAILAMKELFGPIIGITLVLMAVFVPA 468

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G     FA+ +  +  IS   A+++        ++              F  I
Sbjct: 469 GFMPGLTGSMYAQFALVIAATAFISAINAMTLKPTQCALWLKAPDTSKPKNIFFQAFDRI 528

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            + I   +++     V  S    +  I L+            G I + 
Sbjct: 529 YNPIESAYVKFIDRLVHRSGKVCLIGIILVACAIYGLTRIPTGFIPME 576



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 7/220 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V +  V       +  +            +   Q    +++   + +     K+ +  
Sbjct: 271 QVVRIRDVGRVELGSESYNQLANLNGKPTAAIGIFQLPGANALDVAQEVRKAVAKMAKQF 330

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I +    +  + I +LI I +  + +  +L   TT+ + I 
Sbjct: 331 PPGLEYSIPFDTTVFVKASIEEVYKTLFEAGILVLIVIVVFLQNFRASLVPATTVPVTII 390

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   NL  + A++  IG  V+D +V+ + +    +     +S ++    ++
Sbjct: 391 GTFFAMLLLGYSINLLTLFALVLAIGIVVDDAIVIVEGV---TQHIEKGLSPKESAILAM 447

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
            E  G  +  ++      +P        GS+   FA+ +A
Sbjct: 448 KELFGPIIGITLVLMAVFVPAGFMPGLTGSMYAQFALVIA 487



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I +   +L+Y+ +      W      I ++ L +  T+      G++ N+     +L LI
Sbjct: 886  IFALSLVLVYLILSGQYENWLIPSAIILSVPLTLVGTVLALGSLGMDNNMYTQIGLLLLI 945

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
              +  + +++ +  R+  +++    S  +             + TS A  + V+P+    
Sbjct: 946  ALATKNAILIVEVAREQREIHNK--SVLEAAVIGAKTRFRPILMTSFAFIMGVMPLVFAT 1003

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G +   S  I ++ G++ +   ++       + +  W+ K  
Sbjct: 1004 GAGANSRRSIGIAVSSGMLASTCLAVVFVPVFYVLLQTWQDKRK 1047


>gi|60681957|ref|YP_212101.1| putative drug resistance transport-related membrane protein
           [Bacteroides fragilis NCTC 9343]
 gi|60493391|emb|CAH08177.1| putative drug resistance transport-related membrane protein
           [Bacteroides fragilis NCTC 9343]
          Length = 1040

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 188/688 (27%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALIIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAFY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +    G+   S     +    +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSTASSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         +   +  +       +DQ+   
Sbjct: 111 RVNVAQSSLPEPVIVQGVTVQKQSSNIVMFLTMQAQDSVYDGLYLTNYAQLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-DS 236
                          +    DP  +R    + A++       N        G    + ++
Sbjct: 171 PGVGAVNVMGAGNYSMRVWLDPEAMRIRNLSPAQIYQAIQSQNIEVSAGYIGQPIGKNNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  ++                +    I   E G +         I    + 
Sbjct: 231 NAYQYTLNVQGRLT-------------SPEEFGNIIIRTEEGGKMLRLKDVARIDLGSSS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELAQNFPAGVSYNVTLDTTDVIN 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA+++ LG ++   +
Sbjct: 338 ASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMAALGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPKEAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T ++    G   + FA+T+  S ++S   ++++  A+    + + K  +  I       
Sbjct: 458 PTTLISGISGQLYKQFALTIAASTVLSGINSLTLTPALCALFLEHNKPSNFFIYKGFNKV 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L    +    +R     +   I+ ++  I  +         +  G     +   
Sbjct: 518 YDKTQNLYDRIVKGLLIRPGLALISYGIITAVAVILFMKWPSTFVPDEDDGYFIAVIQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++    +     S+                 G+         ++K       
Sbjct: 578 PASSLERTQAVGRKVNQILDSYPEVKDYIGISGFSIMGGGEQSNTGTYFVVLKNWDQRKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T         +++  +    I  ++
Sbjct: 638 KEHTAAAVVERFNEMAYGIQEAQIFAMV 665



 Score = 38.5 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + + L  V          ++  +        +   Q    +S+  ++ ++   +++ 
Sbjct: 258 EGGKMLRLKDVARIDLGSSSYNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELA 317

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P     N  +    +    I + +V  + + + +++ I++  + W   +    T+ +
Sbjct: 318 QNFPAGVSYNVTLDTTDVINASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPV 377

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLT 728
            +  TL   A  G   N   +  ++ 
Sbjct: 378 SLIGTLAVMAALGFSINTLTLFGLIL 403


>gi|262371967|ref|ZP_06065246.1| multidrug resistance protein mexB [Acinetobacter junii SH205]
 gi|262311992|gb|EEY93077.1| multidrug resistance protein mexB [Acinetobacter junii SH205]
          Length = 1034

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 79/686 (11%), Positives = 203/686 (29%), Gaps = 38/686 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  +G+            ++R+P   P                     +
Sbjct: 9   RPIFATVLAIIVMAVGIFSI-----QNLPVERYPDIAPPRIT---------VSATYSGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    +         S     ++I+L F      +    +V   + G
Sbjct: 55  AQAVEDSVTQVLEQQIKGIDNLLYFSSSSDASGNSRISLFFEQGTDPDQAQVQVQNAVNG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  D ++  +        S ++         S  ++ S  +       +   E   
Sbjct: 115 AINRLPEDVQRQGVNVRKSLSDSFMVIGLGDKSGRSTNLDISDYLTNNFELNLSRIEGIG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L+      + +       N        G     ++     
Sbjct: 175 EVNIFGSQ-YAMRIWLDPQKLQSYQLQVSDVRSALENQNTQVAAGAIGELPSVENQYLNA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +                 +    +       +  +      +           
Sbjct: 234 KVTSGSLL-------------RTPEQFENIVVKANNDGQFIYLKDIARVEVGAENYQVFN 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +    S     +     +      A L          +    +      S S 
Sbjct: 281 RLNGYPASGLSLSLTVGANVMQVADAVYKEVARLEKALPEGYFVVYPRDDTPFVKESMSQ 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  LV   ++ + ++ T A+LS+LG ++   ++  +V
Sbjct: 341 VVSTLVEAIILVVLVMFIFLQNWRATLVPAVTVPVVILGTFAVLSVLGMSINTLTLFAMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     + Q S   +           +    +      + + FF
Sbjct: 401 LAIGLLVDDAIVVVENVERLMHEQQLSAKQASIQSMQEISGALVGITLVLTAVFIPMSFF 460

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F+IT+ +++++S+F A+ +  AM   +++ ++ ++      +        
Sbjct: 461 SGATGIIYRQFSITLVVAMVLSLFVALILTPAMCAILLKPQQKQAKWAIWFNNSLDNIKT 520

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-----KGGIQLGVLANRPVDLS 592
             ++F          S++  +  I             F     +G + +     +   +S
Sbjct: 521 RYLKFSSKVIGFKVFSLIAIVGLIASFVLVYRILPTSFLPQEDQGLLGVQFTLPQGTPMS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              +  +++    +  +  +     ++  +   G      +    +K         ++ Q
Sbjct: 581 KTEAVGKTISDYFLENEKANLNGVMVIHGRNFSGTGQNLGQAFISLKHWDDRPGSENSAQ 640

Query: 653 NTEIVGPKISRELIRKGIVGVIISAI 678
                  +   +  +  I+ ++ S I
Sbjct: 641 QIRARAMQYFSKNNQARIMVIMPSVI 666



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 87/207 (42%), Gaps = 8/207 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A  + +  ++K + E   +   ++      +   +++   +  +I+  + M I++    
Sbjct: 305 DAVYKEVARLEKALPEGYFVVYPRDDTPFVKESMSQVVSTLVEAIILVVLVMFIFLQ--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    T+ + I  T    ++ G+  N   + A++  IG  V+D +VV + +    
Sbjct: 362 NWRATLVPAVTVPVVILGTFAVLSVLGMSINTLTLFAMVLAIGLLVDDAIVVVENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            ++   +S +    +S+ E  G  V  ++      +PM+ + G+       F+I +   +
Sbjct: 420 LMHEQQLSAKQASIQSMQEISGALVGITLVLTAVFIPMSFFSGATGIIYRQFSITLVVAM 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           V++   ++ +   +   +   + K A+
Sbjct: 480 VLSLFVALILTPAMCAILLKPQQKQAK 506



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 78/246 (31%), Gaps = 8/246 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S            D        E+           D+ A     + ++   T +  + 
Sbjct: 787  NASGQMVPFTQFSQIDWQGAPPMLERFMGYPAINLEADAAAGFSSGQGMQAIQTLVDQMP 846

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
             +           ++   + I   ++S   + + +   ++ W      +  + L I  T+
Sbjct: 847  EVGLEWSGLSYQEQQSSNQAIWLYLVSVAFIFLCLAALYESWSIPSVVMAAIPLGIGGTI 906

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  LFG   ++    A+LT IG S  + +++ +       L     +  D    +    
Sbjct: 907  IFSYLFGFANDIYFQIALLTTIGLSCKNAILMVEFA---ASLQQQGRNSLDAALHAAGLR 963

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G     +    +  G+V      + I  P +  +  
Sbjct: 964  LRPILMTSIAFGAGVIPLMFSTGAGALSRQAIGFSVFGGVVFGTVL-VLIFIPFMYVLVT 1022

Query: 826  WRAKNA 831
               K  
Sbjct: 1023 HYFKPK 1028


>gi|86144827|ref|ZP_01063159.1| protein translocase subunit SecD [Vibrio sp. MED222]
 gi|85837726|gb|EAQ55838.1| protein translocase subunit SecD [Vibrio sp. MED222]
          Length = 599

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 158/509 (31%), Positives = 266/509 (52%), Gaps = 39/509 (7%)

Query: 33  DRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
              P  +       I LGLDLRGG   +LEVD +   +   Q   DE+ S ++       
Sbjct: 114 PAAPKWLTDMGFAPIQLGLDLRGGVQFLLEVDMEPVYHAQAQAMVDEVTSQVR-----YA 168

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
             + + +++   F      E     +                       ++K +++  S+
Sbjct: 169 RGKVVNDQVQFDFRTDADFEKAQKLIREEFPHWLRD------------RSDKSLTLTQSE 216

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
                + +  ++Q+++I+R RI+++GI+E++IQR G  RI I+LPG QDP+  + ++G T
Sbjct: 217 EEQRTLRNLTVQQNLQIMRSRIEELGITEASIQRQGESRIRIELPGVQDPAAAKDVIGAT 276

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           A ++F+ V             + L+D+DGN+ +V  K  +SG H+  A +          
Sbjct: 277 ASLAFYSVYD-----NATRNTQTLKDTDGNRVVVARKAVLSGEHIIDARSGIGEMG-SAE 330

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPSGKA 317
           V+I+ D  G ++  E +R NIGKP+A V                        Q+    + 
Sbjct: 331 VNITLDSSGGKKMSEFSRHNIGKPMATVYSEYSRDRAGNSKQDSEVISVANIQSQLGSRF 390

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           +I+G  ++  A  LA +LRAGSL   + I+EER +G  LG++++  G  A+  GL L + 
Sbjct: 391 RITGAGSLAEAQELALLLRAGSLTAPVTIIEERTIGPSLGAENVTNGFAALALGLGLTLT 450

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNE 436
           FM + Y + G VA+ ++ +N+     L++LL  A LTLP IAG+VL +G+AVD+N+L+ E
Sbjct: 451 FMALWYRRLGWVANCALVVNMTTLFGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFE 510

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           RIR++ ++ +S   S+D GF  A+S+IFD+N+T +I  V L+  G G ++GFA+T+GL +
Sbjct: 511 RIRDKMKEGRSFASSIDRGFDSAFSSIFDANVTTMIVAVALYTIGNGPIQGFALTLGLGL 570

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           L SMFT I   RA++  +    +   + I
Sbjct: 571 LTSMFTGIFASRAIINLVWGRDQRHDVRI 599



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 90/240 (37%), Gaps = 5/240 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    +       D    +    ++ L       G           +  +   +    TI
Sbjct: 360 SEYSRDRAGNSKQDSEVISVANIQSQLGSRFRITGAGSLAEAQELALLLRAGSLTAPVTI 419

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +GP +  E +  G   + +     L ++ + ++      A   L++++T   G  
Sbjct: 420 IEERTIGPSLGAENVTNGFAALALGLGLTLTFMALWYR-RLGWVANCALVVNMTTLFGLI 478

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           AL  G    L  +A ++  +G +V+  V++++R+R  MK      SF   ID+  +    
Sbjct: 479 ALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKMKE---GRSFASSIDRGFDSAFS 535

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                ++   I  + +   G   I  FA+ +  G++ +  + IF +  I+  ++    ++
Sbjct: 536 SIFDANVTTMIVAVALYTIGNGPIQGFALTLGLGLLTSMFTGIFASRAIINLVWGRDQRH 595


>gi|84624528|ref|YP_451900.1| hypothetical protein XOO_2871 [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368468|dbj|BAE69626.1| conserved hypothetical protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 862

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/558 (12%), Positives = 146/558 (26%), Gaps = 42/558 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL      L    ++++P   P               + +    
Sbjct: 8   RPNFAWVVAISISLAGLLA-----LRTLPVEKYPEVAPP-------------QISIMATY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +       +   L           S      +IT++F            V   
Sbjct: 50  PGASAQLVNDAVTSAIEQELNGARDMLYYDSSSSNGSAQITITFQPGTDPNIAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIGI 176
           ++   S+L     +  L         ++L          +   +  +    R   D+I  
Sbjct: 110 IRQSESRLPAAVTQLGLQVEQTTAGFLMLYSLVYKDATAVQDVVRLNDYAARVVNDEIRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    D   LR    +   ++      N        G R     
Sbjct: 170 VPGVGRVQFFGA-EAAMRVWVDTQALRGYGLSIVDVNNAIRAQNLQVAAGSLGERPGAQD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +                       +    +   +             +   L  
Sbjct: 229 QELTTTL-------------VVPGLMESPQEFGQIVLRAQANGAVVHLSDVAKLELGLEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T+         L           V   +     
Sbjct: 276 YQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRKRLEELSQSFPADIAYSVPFDSSTFVN 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV +V+F+ +   ++ L+    + + ++ T A++ LLG ++ + S
Sbjct: 336 VAIKKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGTFAVMKLLGFSVNMMS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +      +  S   +     ++    I    +      +
Sbjct: 396 MFAMVLAIGILVDDAIVVVENVERLMADEGLSPRDASMKAMTQVGGAIVGITLVLTAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L F  G      R F+  + +SIL S F A+++  A+    +               F 
Sbjct: 456 PLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPALCATFLAPIDGHQEKNGFFGWFD 515

Query: 533 LIPDCIAIQFMRARFWGV 550
              + +  +F R     V
Sbjct: 516 RNFNALTSRFDRLNHRLV 533



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V      L+      Q   G            G++VA    +    +++++  P 
Sbjct: 261 VHLSDVAKLELGLENYQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRKRLEELSQSFPA 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            I+K +  ++ +   + + +++  +   + L     + + +  T
Sbjct: 321 DIAYSVPFDSSTFVNVAIKKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N+ ++ A++  IG  V+D +VV + +     +    +S RD   K++ +
Sbjct: 381 FAVMKLLGFSVNMMSMFAMVLAIGILVDDAIVVVENV--ERLMADEGLSPRDASMKAMTQ 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LP+A   G   VI   F+  +A  I+ +   ++ +   +
Sbjct: 439 VGGAIVGITLVLTAVFLPLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPAL 493


>gi|297155802|gb|ADI05514.1| preprotein translocase subunit SecF [Streptomyces bingchenggensis
           BCW-1]
          Length = 380

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 141/301 (46%), Gaps = 13/301 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+  R    GISIL +I +I  L   GLN GI+F GG          V  S  R   E
Sbjct: 18  YDFVGKRKIWYGISILITITAIVGLAVRGLNLGIEFSGGAVFETP-KTSVSASHAREVAE 76

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           S   G  +     G     +++           +          E+   ++   T++VGP
Sbjct: 77  SASGGHTAVVQELGRGGLRIQISELGTKEALPVQEKLA-----KELDVKTSEIETQLVGP 131

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               E+  K   G+ I  + ++IY+ I F+W  AL A+  LI D+T T+G +AL G E  
Sbjct: 132 SWGEEIANKAWQGLAIFMVLVVIYLAIAFEWRMALAALIALIHDLTITVGVYALVGFEVT 191

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ ++S+N TL RS+ T++
Sbjct: 192 PGTVIGLLTILGYSLYDTVVVFDGLKEASKDLTKQTRFTYSEIANRSLNSTLVRSINTTV 251

Query: 778 AAFISVLPMAVW-----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A + V  +        G  ++   ++ +  G+   A SSIFIA P++  + +   +   
Sbjct: 252 VALLPVGALLFIGGGALGAGMLNDISLALFVGLAAGAYSSIFIATPLVADLKERDPQMKA 311

Query: 833 I 833
           +
Sbjct: 312 L 312


>gi|325523875|gb|EGD02099.1| preprotein translocase subunit SecF [Burkholderia sp. TJI49]
          Length = 232

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/218 (30%), Positives = 121/218 (55%), Gaps = 4/218 (1%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V ++ Q    +   +  + V   +    P  T+Q  E VGP++ REL   G++ +    I
Sbjct: 3   VLIRLQLKQGLTSAQQSDQVMTALKAQSPDVTLQRVEFVGPQVGRELATDGLLALACVVI 62

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++IY+ IRF+W +A+  I   + D+   LGFFA F  EF+L  +AA+L ++GYSVN+ V
Sbjct: 63  GIVIYLSIRFEWKYAVAGIIANLHDVVIILGFFAFFQWEFSLAVLAAILAVLGYSVNESV 122

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V++DR+R+  +     +S  ++I+ +I  T+ R++ T  +  + VL M  +GG  +  FA
Sbjct: 123 VIFDRIRETFRR-ERKMSVPEVINHAITTTMSRTIITHTSTEMMVLSMFFFGGPTLHYFA 181

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRA---KNARI 833
           + +  GI+    SS+F+A  + +++   R    K  ++
Sbjct: 182 LALTVGIMFGIYSSVFVAGSLAMWLGIKREDLIKEKKV 219


>gi|58582641|ref|YP_201657.1| multidrug efflux transporter [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58427235|gb|AAW76272.1| multidrug efflux transporter [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 862

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/574 (12%), Positives = 150/574 (26%), Gaps = 42/574 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL      L    ++++P   P               + +    
Sbjct: 8   RPNFAWVVAISISLAGLLA-----LRTLPVEKYPEVAPP-------------QISIMATY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +       +   L           S      +IT++F            V   
Sbjct: 50  PGASAQLVNDAVTSAIEQELNGARDMLYYDSSSSNGSAQITITFQPGTDPNIAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIGI 176
           ++   S+L     +  L         ++L          +   +  +    R   D+I  
Sbjct: 110 IRQSESRLPAAVTQLGLQVEQTTAGFLMLYSLVYKDATAVQDVVRLNDYAARVVNDEIRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    D   LR    +   ++      N        G R     
Sbjct: 170 VPGVGRVQFFGA-EAAMRVWVDTQALRGYGLSIVDVNNAIRAQNLQVAAGSLGERPGAQD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +                       +    +   +             +   L  
Sbjct: 229 QELTTTL-------------VVPGLMESPQEFGQIVLRAQANGAVVHLSDVAKLELGLEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T+         L           V   +     
Sbjct: 276 YQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRKRLEELSQSFPADIAYSVPFDSSTFVN 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV +V+F+ +   ++ L+    + + ++ T A++ LLG ++ + S
Sbjct: 336 VAIKKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGTFAVMKLLGFSVNMMS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +      +  S   +     ++    I    +      +
Sbjct: 396 MFAMVLAIGILVDDAIVVVENVERLMADEGLSPRDASMKAMTQVGGAIVGITLVLTAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L F  G      R F+  + +SIL S F A+++  A+    +               F 
Sbjct: 456 PLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPALCATFLAPIDGHQEKNGFFGWFD 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
              + +  +F R     V  +    +    LL  
Sbjct: 516 RNFNALTSRFDRLNHRLVHRAGRCMLVYAVLLSV 549



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V      L+      Q   G            G++VA    +    +++++  P 
Sbjct: 261 VHLSDVAKLELGLENYQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRKRLEELSQSFPA 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            I+K +  ++ +   + + +++  +   + L     + + +  T
Sbjct: 321 DIAYSVPFDSSTFVNVAIKKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N+ ++ A++  IG  V+D +VV + +     +    +S RD   K++ +
Sbjct: 381 FAVMKLLGFSVNMMSMFAMVLAIGILVDDAIVVVENV--ERLMADEGLSPRDASMKAMTQ 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LP+A   G   VI   F+  +A  I+ +   ++ +   +
Sbjct: 439 VGGAIVGITLVLTAVFLPLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPAL 493


>gi|329957496|ref|ZP_08297971.1| RND transporter, HAE1 family [Bacteroides clarus YIT 12056]
 gi|328522373|gb|EGF49482.1| RND transporter, HAE1 family [Bacteroides clarus YIT 12056]
          Length = 1010

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 90/687 (13%), Positives = 193/687 (28%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLSTVLTLIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q  ++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGSSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N            +  +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPIDVKNAVDNENVELPSGSIEGNTIELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E G R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLILKEDGNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGIVVIPQPGANHIQIADAVYERMEKMQKDLPEDVHYSYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKQTVYEAFILVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F+I +  S++IS F A++    +   ++  ++ +S        FF   + +
Sbjct: 453 GTTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREKQSWFYRKTEPFFEGMNNV 512

Query: 539 AIQ----FMRARFWGVGISI-LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+R R+  +  +     I      +       ++ +  I +       V    
Sbjct: 513 YSRSLAAFLRKRWIALPFTALTIIIIGFLWNYIPAEMSPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S              G  N  + L+     +  Q  V E + K + +
Sbjct: 573 IRDYTEDINQLVDSIVPDAEAVTARVSSGSGNVRITLKDMQDRNYTQMEVAEKLSKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        L G   N+ ++ A++  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +  ++   +   E     + T++       P+    G+       F+I ++  
Sbjct: 410 YVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMDGTTGRLFREFSIVVSGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   R K +
Sbjct: 470 VIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 56/146 (38%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +   T       I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQETGEDKMQAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +V+   +++I   I  ++   R+K  
Sbjct: 983  LVSTLLTMYIVPAIYSYVSTNRSKLK 1008


>gi|291565988|dbj|BAI88260.1| putative multidrug efflux pump [Arthrospira platensis NIES-39]
          Length = 1098

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/522 (11%), Positives = 138/522 (26%), Gaps = 39/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +G +        +  +  FPS  P                     
Sbjct: 8   KRPVFATVCSLVIILVGFV-----GFTRLPVQEFPSIDPPVVR---------VRTTYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + ++       S R+  + I + F   R  E     V   +  
Sbjct: 54  NAEVVETEVTEILEAAINGVQGLRTMTSSSREGLSSINVEFELERDLEVAVQDVLSRVSR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++      +  I+      D      +E S    +   + +       
Sbjct: 114 ATGRLPSDVNNPVVSKDGSDDDRIMWIAIYGD--RFSTLELSNYADQFLRNSLETVNGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  R+     T   +       N            +        
Sbjct: 172 SIFIGGERRYAMRIWLDAKRMAARNVTPLDVENALQRQNVEIPSGRIEGETMEFPVRTLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +    I        +                    
Sbjct: 232 RLQTPP-------------------EYEDLIIRRNPDGTQIRIGDIGYAEIGAESDRTIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S  +  +              L           V          +   
Sbjct: 273 RFRGQPAVTIGVSRLSDANLLEVATGVKERMKELSQNFPDGMNYTVAVDYSEFVQVAIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +   LV++V+F+ +   +  L+   +I +++I     +  LG ++ + ++  + 
Sbjct: 333 VWQSLLLAISLVVLVIFLFLKNWRATLIPTITIPVSLIGAFGAMFFLGFSINVLTLFALT 392

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L  GL VD  I+V E I    + K    F +           +  + +  +   V + F 
Sbjct: 393 LATGLVVDDTIVVLENIVRYIDEKKMHPFQAAIHAMGEVVFAVIATTVVLIAVFVPVSFS 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           G   G     FAIT+ +S++ S F A+++  A+   I++   
Sbjct: 453 GGATGQIFNEFAITLAISVVFSSFVALTLAPAVSAIILKPSH 494



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + +  +       +      +        +   +    + +     ++   K++++  
Sbjct: 251 TQIRIGDIGYAEIGAESDRTIARFRGQPAVTIGVSRLSDANLLEVATGVKERMKELSQNF 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P        +   +  +  I +    ++++   +++ I++  K W   L    T+ + + 
Sbjct: 311 PDGMNYTVAVDYSEFVQVAIDEVWQSLLLAISLVVLVIFLFLKNWRATLIPTITIPVSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              G     G   N+  + A+    G  V+D +VV + + + +      +        ++
Sbjct: 371 GAFGAMFFLGFSINVLTLFALTLATGLVVDDTIVVLENIVRYIDE--KKMHPFQAAIHAM 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            E +   + T++      +P++  GG+       FAI +A  +V ++  ++ +A  +
Sbjct: 429 GEVVFAVIATTVVLIAVFVPVSFSGGATGQIFNEFAITLAISVVFSSFVALTLAPAV 485



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 92/276 (33%), Gaps = 12/276 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               + +          +  G I +   + + + LS + +  +S     I+  N       
Sbjct: 757  RYEVIVRGQSEFRASPEDIGEISVRSESGQMIPLSNLVTIRDSTLPPQINHFNRFRSATL 816

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                        A   + ++  + I E +       +               I    +S 
Sbjct: 817  EGSAAPGYSLGEALEALQDLADRTIPETMRTDLAGESREFSQAG-----DATIYIFGLSL 871

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
              + + +  +F+ +   L  +  + L +    G   L  +E N+ +   ++ LIG S  +
Sbjct: 872  AFIFLTLAAQFESFVDPLVILLAVPLSLLGAFGALWLAELELNIYSRIGLIMLIGLSTKN 931

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ +      +L     S      ++        + T+++    V+P+A     G   
Sbjct: 932  SILIVEFAN---QLREMGRSISQAAIEAGKVRFRPILMTALSTIFGVMPLAFATGAGAVS 988

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              S  + +  G++V+   S++I     +     +++
Sbjct: 989  RVSIGMSVMGGMLVSTLLSLYIVPVFYIIATTLQSR 1024


>gi|209551090|ref|YP_002283007.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536846|gb|ACI56781.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1060

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/666 (10%), Positives = 166/666 (24%), Gaps = 37/666 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  +   +G +      L Q  + ++P+ +P               + +    
Sbjct: 9   RPVLANVLALVFVLVGAVA-----LYQLPVAQYPNVVPPT-------------VQVTTRF 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +     +         +    + ++FA     +     V  
Sbjct: 51  PGASAQTLVDTVALPIEQQVNGVQNMLYMQSTSASDGTYSLIVTFAIGTDPDQAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L    +   + T  +    +             ++  S   +    +++   
Sbjct: 111 RVAIAMSSLTEAVQLQGVTTQKKSTAILGFVSLTSSDSRYDSLFLSNYAVINLQNELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+ L+    T   +       +        G+  +    
Sbjct: 171 PGVGNVTVFGAGQYAMRIWMDPNLLQARGLTPQDVVSVVQQQSQEVAAGQIGIPPVPKGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +     ++           +   ++ +V       G R         +       
Sbjct: 231 IFQYTLNVNGRLN-----------EAADYENIVVKVESGQGGRITRVRDIGRVELGAQTY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +               + +     +        L     P     +          
Sbjct: 280 SQSFMQNGRPAAGIGIFQLPEANAIAVAQAVRAKMDELSKSFPPGLEYHLPFDTTKFVEA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+ + +   +  LV   ++ + +I   A ++ LG T+ L ++
Sbjct: 340 SIDEVYVTLIEAGVLVLIVILVFLQDWRAMLVPATTVPVTIIGAFAAMAALGFTVNLSTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIAT 474
             IVL IG+ VD  I++ E +        S   + +            I    +   I  
Sbjct: 400 FAIVLAIGIVVDDAIVIVEGVARHIEAGMSGRKAAEKAMEELLGPVIGITLVLMAVFIPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   R FA+ +  + LIS   A+++        +R              F  +
Sbjct: 460 AFLPGLTGQLYRQFALVIAATALISAVNAVTLKPTQCALWLRPPVPPEKRNALYRGFNRV 519

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            D     +          S + +I +  L+              + +       +   + 
Sbjct: 520 YDRGERSYAGLIGSMTRHSGIMAIAAFALIGVAVWGLSRLPTAFLPVEDQGYVLISTQLP 579

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
               +      +       E    V                 +    +  +V     +  
Sbjct: 580 DGASKERTDAVMEEVGKIAEATPGVDQVLTISGISVLDNSASLQNAGVAYVVLKDWDERG 639

Query: 655 EIVGPK 660
           +  G  
Sbjct: 640 KEKGQD 645



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/188 (18%), Positives = 76/188 (40%), Gaps = 9/188 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    ++ + K     +      +T         E+    I   ++  I +L+++    
Sbjct: 308 QAVRAKMDELSKSFPPGLEYHLPFDTTKFVEASIDEVYVTLIEAGVLVLIVILVFLQ--- 364

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       A  G   NL+ + A++  IG  V+D +V+ + +    
Sbjct: 365 DWRAMLVPATTVPVTIIGAFAAMAALGFTVNLSTLFAIVLAIGIVVDDAIVIVEGV---A 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +     +S R   +K++ E LG  +  ++      +P A      G +   FA+ +A   
Sbjct: 422 RHIEAGMSGRKAAEKAMEELLGPVIGITLVLMAVFIPAAFLPGLTGQLYRQFALVIAATA 481

Query: 806 VVAASSSI 813
           +++A +++
Sbjct: 482 LISAVNAV 489



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 9/203 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +                        +E    G +  I +   +L+Y  +      W  
Sbjct: 841  QSLDVMEQIADHTLPPGTGFEWTALSYQEKAVGGQIYFIFALAMLLVYFVLAGQYESWIL 900

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I+ + L +  T+      G+  NL     ++ LI  +  + +++ +  R+      
Sbjct: 901  PLAVISAVPLALLGTVAALMAAGVANNLYTQIGLILLIALAAKNAILIVEYAREKRAE-- 958

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              +   D   ++        + TS A  + VLP+ +    G S   S  I +  G++ + 
Sbjct: 959  -GMEILDAAVEAARLRFRPILMTSFAFILGVLPLVLATGAGASARKSIGISVFSGMIAST 1017

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
              +I       + +        R
Sbjct: 1018 CLAILFVPSFYVLLQRLEEYWKR 1040


>gi|78777771|ref|YP_394086.1| preprotein translocase subunit SecF [Sulfurimonas denitrificans DSM
           1251]
 gi|78498311|gb|ABB44851.1| protein translocase subunit secF [Sulfurimonas denitrificans DSM
           1251]
          Length = 323

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 99/294 (33%), Positives = 158/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                   A+ FM      + +SI+  + S+ +L   GLNYG+DF GG  + V       
Sbjct: 1   MEFFRQTSAMNFMGKSKIAMILSIIMVLSSLAILSLKGLNYGVDFAGGTIVQVKYKGDAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           + ++R  L + QI + +     G  + +V        S      +  V K          
Sbjct: 61  IDMMREKLSTNQIFEGASITEFGSADEVVIRMRT--TSSDVVVDVGDVTKAALVGTGEFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  +IVGPK+  EL  KG++ +I++   +LIY+  RF+W FAL ++  L+ D++  LG 
Sbjct: 119 IRRVDIVGPKVGSELKEKGLMSLILAVAGILIYVAFRFEWRFALSSVLALVHDVSIALGA 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            AL G+E NL  +AA+LT++GYS+ND ++V+DR+R+ +   T    F D+I++SI  TL 
Sbjct: 179 IALVGLEVNLDVLAALLTILGYSLNDTIIVFDRIREGI-TNTRDGEFGDIINESITSTLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R+  TS+     V  + +WGG +I +FA  +  GIVV   SSIF+A+P LL + 
Sbjct: 238 RTTLTSLTTLFVVFTLFIWGGEIIHAFAFTLLVGIVVGTYSSIFVASPTLLTLG 291


>gi|319761176|ref|YP_004125113.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Alicycliphilus denitrificans BC]
 gi|330823036|ref|YP_004386339.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Alicycliphilus denitrificans K601]
 gi|317115737|gb|ADU98225.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Alicycliphilus denitrificans BC]
 gi|329308408|gb|AEB82823.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Alicycliphilus denitrificans K601]
          Length = 1051

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/630 (12%), Positives = 165/630 (26%), Gaps = 51/630 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G +        Q  + ++P+  P               + + V  
Sbjct: 8   RPIFAWVVAIFIMVAGAVSI-----TQLPIAQYPAVAPPT-------------IQVSVAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+      +   +    G+         N    I LSF      +     V  
Sbjct: 50  PGATAQTLEDSVLAVIEREMNGATGLAYMEATAQANGTGSIVLSFEPGTNDDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L     +  +     +   ++ S    +         +    R  + ++   
Sbjct: 110 RLSRATPRLPAAVTQQGVRVEKSRSNFLLFSMLTSETPNVSIDALNDYAARNIVPELQRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L+    +  +++      N        G        
Sbjct: 170 PGVGSVTQFGS-ERAMRVWIDPAKLKGFNLSLDQVNAAIRAQNVQVSAGNLGDLPSAQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++S                +    +                 +       
Sbjct: 229 TTTATIVVQGQLSTTE-------------QFGNIVLRANTDGSTVRLRDVATLELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +      A L+          +          
Sbjct: 276 STSARLNGSPAVGMGVQLTPTANALATAKAVKARLAELQQYFPQGVKYTIPYDTSTFISV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ ++    + + ++ T   L  +G ++ + ++
Sbjct: 336 SIEKVVHTLLEAVVLVFLVMFLFLQNFRYTIIPTIVVPVALLGTFGALLAMGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +    I    +  +   V 
Sbjct: 396 FGMVLVIGIVVDDAIVVVENVERIMSEEGLPPLQATRKAMDQISGAIVGVTVVLVSVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           L FF    G   R FA TM  SI  S F A+S+  A+   +           +       
Sbjct: 456 LAFFAGSTGNIYRQFAATMATSIAFSAFLALSLTPALCGTLLKPVDAGHHMEKKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    S        +A    R     V  + L    +I            + +G +   V
Sbjct: 516 NRAFKSTTHRYESGLARLVRRGGRMAVIYAALIGAVAIVYTRLPTSFLPNEDQGYLITNV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                  L   R+ L  ++   +     + 
Sbjct: 576 QLPAGASLERTRAALTQVENFALKQPEVNN 605



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     Q    S +        +        +++A  + ++    ++ +  
Sbjct: 258 STVRLRDVATLELGAQSYSTSARLNGSPAVGMGVQLTPTANALATAKAVKARLAELQQYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I K +  ++ + + + + +++  + + + +     + + + 
Sbjct: 318 PQGVKYTIPYDTSTFISVSIEKVVHTLLEAVVLVFLVMFLFLQNFRYTIIPTIVVPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G     G   N+  +  ++ +IG  V+D +VV + +     +    +       K++
Sbjct: 378 GTFGALLAMGFSINVLTMFGMVLVIGIVVDDAIVVVENV--ERIMSEEGLPPLQATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  ++      +P+A + GS       FA  MA  I  +A  ++ +   +
Sbjct: 436 DQISGAIVGVTVVLVSVFVPLAFFAGSTGNIYRQFAATMATSIAFSAFLALSLTPAL 492



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 68/182 (37%), Gaps = 8/182 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G     +L   + +V    S +A+ + +   ++ W   
Sbjct: 835  DAMAEMERLAAQLPEGFGFEWTGQSREEKLAGSQAMVLYAFSLLAVFLCLAALYESWSIP 894

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L    L G+  ++     ++T+IG S  + +++ +  +    L  +
Sbjct: 895  FSVLLVVPLGVLGVLLATLLRGMSNDVYFQIGLVTIIGLSAKNAILIIEFAKD---LQAS 951

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAAS 810
              S      ++ +      V TS+A  + VLP+ +  G+      +    +  G++    
Sbjct: 952  GKSVIQAALEAAHLRFRPIVMTSLAFTLGVLPLFLASGASSASQRAIGTGVIGGMITGTL 1011

Query: 811  SS 812
             +
Sbjct: 1012 LA 1013


>gi|188990404|ref|YP_001902414.1| putative RND superfamily phytotoxin exporter [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167732164|emb|CAP50356.1| putative RND superfamily phytotoxin exporter [Xanthomonas
           campestris pv. campestris]
          Length = 1041

 Score =  183 bits (463), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 75/678 (11%), Positives = 184/678 (27%), Gaps = 43/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P               +      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  +R  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDALAGIEGIETIEARSRNGSSDISIEFVPTRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARPPEISKVESDADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARALTVADVETALQNENVELPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLSKGEGGYVVRLGDVAKVELTSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +       A   A  ++          V          +    
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVAREARAQAEEIQKTLPQGTNIFVAFDTTTFIDAAVERV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LVL+V+++ +   +  L+   ++ + +I     L     ++ L ++  +VL
Sbjct: 335 YHTLIEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E I+      +    +   G  +    +  +    +   + + F  G
Sbjct: 395 CIGLVVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP---- 535
                 R  A+ +  ++ IS F A+++   M   ++R       +         +     
Sbjct: 455 NTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRAHDQAKPNRFHQWFNRRMQAVSA 514

Query: 536 -DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +++    R W   + +L ++ +   L +   +     +      ++ + P      
Sbjct: 515 AYGRSLERHVQRTWIFALLMLLALGASAWLMSRIPSELAPAEDRGNFQIMIDGPEGAGFD 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +  +  Q+ DI       +K  +      PG   +   +         +         T
Sbjct: 575 YTVGQMHQVEDILRPYVGADKPIVRANPRVPGGFGSSEEMHTGRVSVFLQDWEKRDRPTT 634

Query: 655 EIVGPKISRELIRKGIVG 672
           E+      +  +  G+  
Sbjct: 635 EVADELQQKLNVLTGVRA 652



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 859  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     S    I +S +  L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDEGRSVHAAIVESASVRLRPILMTSIATVVGAIPLVV 975

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GG       +  + + FG+ ++   S+++       I  +      +
Sbjct: 976  AGGPGSASRATIGVVVIFGVSLSTLLSLYVVPAFYSLIAPYTKSPEAL 1023



 Score = 44.7 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 68/210 (32%), Gaps = 4/210 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V     +       FQ+       L  ++    +++   R      ++I + +P 
Sbjct: 254 VRLGDVAKVELTSAERRAYFQSNGVPNVGLGIVRNSTANALDVAREARAQAEEIQKTLPQ 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
            T               + +    +I + + +L+ IW+       AL    T+ + +   
Sbjct: 314 GTNIFVAFDTTTFIDAAVERVYHTLIEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIAA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 F    NL  + A++  IG  V+D +VV + +    +             +   +
Sbjct: 374 FIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENI---QRRIDLGEPPLVAAKRGTGQ 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                + T+       LP+    G+    F
Sbjct: 431 VAFAVIATTAVLVAVFLPVGFLEGNTGRLF 460


>gi|148272992|ref|YP_001222553.1| preprotein translocase subunit SecF [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830922|emb|CAN01866.1| protein-export membrane protein [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 336

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 133/297 (44%), Gaps = 14/297 (4%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R R W    +I   I  +  L   G  +GI+F GG +  V   +     +    + ++  
Sbjct: 23  RRRLWYSIAAICILISVLGPLVRGGFTFGIEFTGGSEYTVSGVQSQSQDIASDAVATVTP 82

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                 +   +   +   Q QP DS A  + L             ++      +GP   +
Sbjct: 83  VPARVSSVGSDGVRVQTDQLQPADSSAVRQALATAY------GVETSSVTESFIGPSWGQ 136

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           ++ R+ + G+++      + + + F+ W  ++ AI  L+ D+  T G + + G E    A
Sbjct: 137 DITRQALWGLVVFLALAAVVMSVYFRTWKMSVAAIIALLHDLVLTAGIYGITGFEVTPAA 196

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           V   LT++GYS+ D VVV+D++R+N       +  +F   ++ ++N+TL RS+ TS+ A 
Sbjct: 197 VIGFLTILGYSLYDTVVVFDKIRENTAEDGQESRRTFAQSVNLAVNQTLVRSINTSIVAI 256

Query: 781 ISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + V  +        G   +   A+ +  GI+V   S+IFIAAP+   + +   K  R
Sbjct: 257 LPVGSILFIGAVVLGAGTLRDIALSLFIGIIVGTYSTIFIAAPLYAHLREGEPKVKR 313


>gi|28869782|ref|NP_792401.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28853027|gb|AAO56096.1| aliphatic isothiocyanate resistance protein SaxG; AcrB/AcrD/AcrF
           family [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 1047

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 73/632 (11%), Positives = 173/632 (27%), Gaps = 52/632 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P+  P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   +   D      +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLMIYTLSYTGDSANKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAVRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T++        L           V       
Sbjct: 275 QDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPEGVEFSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ LLG ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGKFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            V        +   +  + L+I  +S +    
Sbjct: 575 DVQLPPGATRARTDATAQLLEIYMLSREATGA 606



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   + ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSVPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLF-IYDWRAKN 830
            A    + +     ++ +   R K 
Sbjct: 1009 ATLLGVVLVPIFFVWVLSVLRRKP 1032


>gi|170781152|ref|YP_001709484.1| preprotein translocase subunit SecF [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155720|emb|CAQ00841.1| protein-export membrane protein SecF [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 336

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 71/297 (23%), Positives = 133/297 (44%), Gaps = 14/297 (4%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R R W    +I   +  +  L   G  +GI+F GG +  V   +     +    + ++  
Sbjct: 23  RRRLWYSIAAICILVSVLGPLLRGGFTFGIEFTGGSEYTVSGVQSQSQDIASDAVATVTP 82

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                 +   +   +   Q QP DS A  + L             ++      +GP   +
Sbjct: 83  VPARVSSVGSDGVRVQTDQLQPADSTAVRQALATAY------GVETSSVTESFIGPSWGQ 136

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           ++ R+ + G+++      + + + F+ W  ++ AI  L+ D+  T G + + G E    A
Sbjct: 137 DITRQALWGLVVFLALAAVVMSVYFRTWKMSVAAIIALLHDLVLTAGIYGITGFEVTPAA 196

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           V   LT++GYS+ D VVV+D++R+N       +  +F   ++ ++N+TL RS+ TS+ A 
Sbjct: 197 VIGFLTILGYSLYDTVVVFDKIRENTAEDGQESRRTFAQSVNLAVNQTLVRSINTSIVAI 256

Query: 781 ISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + V  +        G   +   A+ +  GI+V   S+IFIAAP+   + +   K  R
Sbjct: 257 LPVGSILFIGAVVLGAGTLRDIALSLFIGIIVGTYSTIFIAAPLYAHLREGEPKVKR 313


>gi|313200961|ref|YP_004039619.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylovorus sp. MP688]
 gi|312440277|gb|ADQ84383.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylovorus sp. MP688]
          Length = 1040

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/679 (10%), Positives = 175/679 (25%), Gaps = 39/679 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL            L+++P   P              +       
Sbjct: 8   RPIFAWVIAIVIMLAGLAAI-----ETLPLEQYPDIAPPRV---------SINATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++    +        +       ++L+F      +    +V   LQ  
Sbjct: 54  AKTIEDSVTQIIEQYMKGIDNLTYMASTSSSSSASVSLTFDAGTDPDVAQMQVQNKLQQA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    +   +         +++     D       +    I    +DQI   +    
Sbjct: 114 LPRLPQIVQSLGVTVNKTGTDFLMVMSIYSDDPKVTTTDIGDYISSSLLDQISRVDGVGD 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                          +P +L++     + ++      N        G             
Sbjct: 174 VQTMGSGYSM-RIWLNPEKLQKYALIPSDITSAVEAQNTEVSSGQLGALPAVGQQQLNAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  +                    +    +                 +            
Sbjct: 233 ITARS-------------KMQTVAQFRNIVVKAAADGSVVHLGDVARVELGSENYAIAGR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP--IKLNIVEERNVGADLGSDS 360
                         +  +   T E        L             V          S  
Sbjct: 280 YNGKPAAGMGVKLASGANALKTSEAVLAKVKELEPYFPASLKLKTAVTYDTTPFVRISIK 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +      LV++++++ +   +  ++   ++ + ++ T  +L+  G ++   ++ G+
Sbjct: 340 EVVKSLFEAVLLVVLIMYIFLQSWRATIIPAVAVPVVLLGTFGILAAFGYSINTLTMFGL 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +      +  S   +           +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERVMREQGLSAREATRKSMDEITGALIGIALVLSAVFIPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F+IT+  ++L+S+  A+++  A+   +++  +                 
Sbjct: 460 FGGSTGVIYRQFSITIVSAMLLSVLVALTLTPALCATVLKPGEHAPRRGFFGWFNRNFDR 519

Query: 537 CIAIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                         R     +     +  + +L+       I  +    L      PV  
Sbjct: 520 GSKAYHGGVQGILKRKALAMLVYAAIVGVMAVLYVRLPTSFIPTEDQGVLMAQVQLPVGA 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +  R      Q+ +   +  D     +       G+S    R+   +K       P  + 
Sbjct: 580 TDQRLQKVMDQVQEYLLKEPDIVAINIFTGLGVSGNSQNTGRIFIRLKDWDERTGPGQSA 639

Query: 652 QNTEIVGPKISRELIRKGI 670
                   +   ++    I
Sbjct: 640 AEIADKATRALGKIRDATI 658



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 5/148 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              + +LI       W   +     + + +  T G  A FG   N   +  ++  IG  V
Sbjct: 348 AVLLVVLIMYIFLQSWRATIIPAVAVPVVLLGTFGILAAFGYSINTLTMFGLVLAIGLLV 407

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +VV + +     +    +S R+   KS++E  G  +  ++      +PMA +GGS  
Sbjct: 408 DDAIVVVENV--ERVMREQGLSAREATRKSMDEITGALIGIALVLSAVFIPMAFFGGSTG 465

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPI 819
                F+I +   ++++   ++ +   +
Sbjct: 466 VIYRQFSITIVSAMLLSVLVALTLTPAL 493



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 83/262 (31%), Gaps = 11/262 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G   +    N  V  S       +     +S  N       +         
Sbjct: 772  PYRMLPENIGQWYVRNANNDMVPFSSFSQGNWTYGSPQLSRFNGISSIELVGESSPGASS 831

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                  V  M+++  T I      Q+ +         +    +  V +  +  L    + 
Sbjct: 832  GDVMDSVENMMQQMPTGIGYEWAAQSYQERLSGSQAPM----LYAVSVVFVF-LCLAALY 886

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L I   L    L G+  ++     +LT +G +  + +++ +  +  
Sbjct: 887  ESWAVPFSVMLVVPLGILGALLATTLRGLSGDVYFQVGLLTTVGLAAKNAILIVEFAK-- 944

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFG 804
              L    +S  +   +++ + L   + TS+A    VLP+A   G+      +    +  G
Sbjct: 945  -HLQEQGLSLMEATLQAVQQRLRPILMTSLAFIFGVLPLAASSGAGAASRQAIGTGVLGG 1003

Query: 805  IVVAASSSIFIAAPILLFIYDW 826
            ++ A    IF      + +  W
Sbjct: 1004 MLTATLLGIFFVPLFFVLVRGW 1025


>gi|255691898|ref|ZP_05415573.1| multidrug efflux RND transporter MexF [Bacteroides finegoldii DSM
           17565]
 gi|260622451|gb|EEX45322.1| multidrug efflux RND transporter MexF [Bacteroides finegoldii DSM
           17565]
          Length = 1042

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/683 (11%), Positives = 180/683 (26%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSIAQSSLPEPVVVQGVTVQKQSSNIVMFLTMASQDSVYNSLYLTNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
                          +    DP  +R    +  ++       N        G    +D+ 
Sbjct: 171 PGVGAVNVMGAGDYSMRVWLDPEAMRIRNISPQQVYQAIQAQNVEVSAGYIGQPIGQDNK 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  ++                +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRLT-------------SPEQFGNIIIRTEKDGAMLHLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L A         V         
Sbjct: 278 YGVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELGANFPSGVTYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVVLVIFLFLQNWRAVIIPCLTIPVSLIGTLAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G++L I + VD  I+V E           S   ++          I    +  L   V
Sbjct: 398 LFGLILAIAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEITGPIVGVVLVLLAVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
                 G +    + FA+T+  S ++S F ++++  A+    +   K     I       
Sbjct: 458 PTMLISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSKFFIYRGFNKA 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R  F  +  +IL  I  +  +         +  G     V   
Sbjct: 518 YDKTQGVYDGIVKWLLKRPGFSFISYAILTVIAVLLFMRWPSTFVPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++    +     S+                 G+         ++K       
Sbjct: 578 PAASLERTQAVGNQINAILDSYPEVQNYIGITGFSVMGGGEQSNSATYFVVLKNWNERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+ G
Sbjct: 638 KEHTAAAVVNRFNGEAYMTIQAG 660



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/538 (9%), Positives = 133/538 (24%), Gaps = 43/538 (7%)

Query: 329  GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                +         K     +      +       G   I   ++ ++  ++ +      
Sbjct: 502  KSKPSKFFIYRGFNKAYDKTQGVYDGIVKWLLKRPGFSFISYAILTVIAVLLFMRWPSTF 561

Query: 389  VADFSIFLNVILTL------------------ALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            V D      + +                    A+L           I G  +  G    +
Sbjct: 562  VPDEDDGYFIAVVQLPPAASLERTQAVGNQINAILDSYPEVQNYIGITGFSVMGGGEQSN 621

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +      ++  N +      +  +                + A V     G GA  G  +
Sbjct: 622  SATYFVVLKNWNERKGKEHTAAAVVNRFNGEAYMTIQAGQVFAMVPPAIPGLGASGGLQL 681

Query: 491  ---------TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
                     +  +   I    A    +  +  I    +              +       
Sbjct: 682  QVEDRKNLGSTEMQQAIDALLASYHTKPALASISSQYQANVPQYFLNIDRDKVQFMGIAL 741

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR------ 595
                   G  +   +    +     + +      +    +  +    V  S         
Sbjct: 742  NDVFSTLGYYMGAAYVNDFVEFGRIYQVKIEARDQAQRVIDDVLKLSVPNSAGEMVPFSS 801

Query: 596  -SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             + +E     D   +        L         +    + +E + K+           + 
Sbjct: 802  FTKVEEQLGQDQINRYNMYSTAALTCNVAPGSSTGQAIQEMEALFKEQLGDEFGYEWTSV 861

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +         ++ +I++    L+       W   + A+  L + +   +    + 
Sbjct: 862  AYQETQAGNTTTIVLVMALIVAF---LVLAAQYESWTSPVAAVIGLPVALLGAMIGCLIM 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ LI  S  + +++ +  R          S RD   ++ +  L   + 
Sbjct: 919  GTPVSIYTQIGIILLIALSAKNGILIVEFARDFRAE---GNSIRDAAFEAGHVRLRPILM 975

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            TS A  + V+P+      G     +    + FG+ +    +          +   + K
Sbjct: 976  TSFAFVLGVMPLLFATGAGAESRIALGAAVVFGMAMNTLLATVYVPNFYELMQKLQEK 1033



 Score = 42.4 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 51/521 (9%), Positives = 131/521 (25%), Gaps = 31/521 (5%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            ++   +  I Y+++  I +L+ +          R+PS           D   G + +  V
Sbjct: 533  LKRPGFSFISYAILTVIAVLLFM----------RWPSTFVP-------DEDDG-YFIAVV 574

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                  +           + +         ++        S      + N A    +   
Sbjct: 575  QLPPAASLERTQAVG---NQINAILDSYPEVQNYIGITGFSVMGGGEQSNSATYFVVLKN 631

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                K        ++     +    + +      V             Q   +   +  +
Sbjct: 632  WNERKGKEHTAAAVVNRFNGEAYMTIQAGQVFAMVPPAIPGLGASGGLQLQVEDRKNLGS 691

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN- 239
             +   +   L+     +                +   +  +  +     +  +  + G  
Sbjct: 692  TEMQQAIDALLASYHTKPALASISSQYQANVPQYFLNIDRDKVQFMGIALNDVFSTLGYY 751

Query: 240  --QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 V D VE   I+     A    +     V        A      +     +     
Sbjct: 752  MGAAYVNDFVEFGRIYQVKIEARDQAQRVIDDVLKLSVPNSAGEMVPFSSFTKVEEQLGQ 811

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                            +     S    I+    L           +   V  +   A   
Sbjct: 812  DQINRYNMYSTAALTCNVAPGSSTGQAIQEMEALFKEQLGDEFGYEWTSVAYQETQAGN- 870

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                      +   +  +VL          + A   + + ++  +    ++G  +++ + 
Sbjct: 871  ---TTTIVLVMALIVAFLVLAAQYESWTSPVAAVIGLPVALLGAMIGCLIMGTPVSIYTQ 927

Query: 418  AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             GI+L I L+  + IL+ E  R+   +  S+  +           I  ++   ++  + L
Sbjct: 928  IGIILLIALSAKNGILIVEFARDFRAEGNSIRDAAFEAGHVRLRPILMTSFAFVLGVMPL 987

Query: 478  FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
             F    G  +       +   + ++   A   V      + 
Sbjct: 988  LFATGAGAESRIALGAAVVFGMAMNTLLATVYVPNFYELMQ 1028



 Score = 38.9 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S   G +S  N        +  Q           V   +++         T 
Sbjct: 267 DIARIDLGSASYGVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELGANFPSGVTY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  TL   
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVVLVIFLFLQNWRAVIIPCLTIPVSLIGTLAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     ++   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAIAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFVPTMLISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSK 507


>gi|298385654|ref|ZP_06995212.1| multidrug efflux RND transporter MexF [Bacteroides sp. 1_1_14]
 gi|298261795|gb|EFI04661.1| multidrug efflux RND transporter MexF [Bacteroides sp. 1_1_14]
          Length = 1048

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/683 (11%), Positives = 184/683 (26%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVA-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGLPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSVAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSKDSVYNSLYLTNYAKLNLVDQLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
                          +    DP  +R    + A++       N        G    +D+ 
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPAQVYQSIQSQNMEVSAGYIGQPIGQDNK 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  ++                +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRLT-------------SPEQFGNIIIRREQDGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YSVVSRLKGMPTAAIAIYQQPGSNSLDVSKGVKAKMEELATSFPTGVAYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSTREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T+++    G   + FA+T+  S ++S F ++++  A+    +   K  +  I       
Sbjct: 458 PTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSNFFIYKGFNKA 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R     V  +IL  I  I  +         +  G     V   
Sbjct: 518 YDKTQGVYDSTVKWLLQRPLISFVSFAILTVIAVILFMRWPSTFIPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  + +     S+   +             G+         ++K       
Sbjct: 578 PAASLERTQAVGDKINAILDSYPEVENYIGITGFSVMGGGEQSNSATYFVVLKNWDERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+ G
Sbjct: 638 KEHTAAAVVDRFNGEAYMEIQAG 660



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/450 (9%), Positives = 117/450 (26%), Gaps = 27/450 (6%)

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            A+L           I G  +  G    ++      ++  + +      +  +        
Sbjct: 594  AILDSYPEVENYIGITGFSVMGGGEQSNSATYFVVLKNWDERKGKEHTAAAVVDRFNGEA 653

Query: 463  IFDSNITALIATVVLFFFGGGAVRGFAI---------TMGLSILISMFTAISIVRAMMIF 513
              +       A V     G GA  G  +            +   I    A S  +  +  
Sbjct: 654  YMEIQAGQAFAMVPPAIPGLGASGGLQLQLEDRRNLGPTEMQQAIDALLASSHSKPALAS 713

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
            +    +              +                 +   +    +     + +    
Sbjct: 714  VSSQYQANVPQYFLNIDRDKVQFMGIALNDVFSTLSYYMGAAYVNDFVEFGHIYQVKIEA 773

Query: 574  DFKGGIQL-------GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
              +    +          +   +      + +E     D   +        L        
Sbjct: 774  RDQAQRVIDDVLKLSVANSAGEMVPLSSFTKVEEQLGQDQINRYNMYSTAALTCNVAPGS 833

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             S    + +E + K+           +      +         ++ +I++    L+    
Sbjct: 834  SSGQAIQEMETLFKEQLGDEFGYEWTSVAYQETQAGNTTTIVLVMALIVAF---LVLAAQ 890

Query: 687  RFKWYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   + A+  L + +    +G   + G   ++     ++ L+  S  + +++ +  R
Sbjct: 891  YESWTSPVAAVIGLPVALLGAMIGCM-IMGTPVSVYTQIGIILLVALSAKNGILIVEFAR 949

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
                      S R+   ++ +  L   + TS A  + V+P+      G     +    + 
Sbjct: 950  DFRAE---GNSIREAAYEAGHVRLRPILMTSFAFVLGVMPLLFATGAGAQSRIALGTAVV 1006

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            FG+ +    +          +   + K +R
Sbjct: 1007 FGMAMNTLLATVYIPNFYELMQKLQEKFSR 1036



 Score = 41.2 bits (94), Expect = 0.75,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 78/245 (31%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S           +  Q           V   +++  T        
Sbjct: 267 DIARIDLGSASYSVVSRLKGMPTAAIAIYQQPGSNSLDVSKGVKAKMEELATSFPTGVAY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  TL   
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSTREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSN 507


>gi|167763088|ref|ZP_02435215.1| hypothetical protein BACSTE_01455 [Bacteroides stercoris ATCC
           43183]
 gi|167699428|gb|EDS16007.1| hypothetical protein BACSTE_01455 [Bacteroides stercoris ATCC
           43183]
          Length = 1039

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/688 (11%), Positives = 180/688 (26%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LGILPIAQYPDITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSDE-LRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAQTVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTVTFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++      D      +  S       +DQ+   
Sbjct: 111 RVSVAQSSLPTPVVVQGVTVQKQSSNIVMFLTMKSDNKDYDGLYLSNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
                          +    DP+ +R    + A +       N        G     ++ 
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPAAMRIRNLSPADVYQAIQTQNVEVSAGNVGQPIGNENK 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  K  ++                +    I   E G R        +I    A 
Sbjct: 231 NAYQYSLTVKGRLT-------------SPEEFGNIILRTESGGRILRLRDVAHIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +              L           V         
Sbjct: 278 YSVVSQLDGKPTAAIAIYQQPGSNSLDVSTGVKAKMQELSQNFPAGVQYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA++SL G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAIMSLFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           +   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENSTRLLDTGRYTARQAVTEAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID------IN 526
            T+++    G   + FA+T+  S ++S   ++++  A+   +++  K             
Sbjct: 458 PTMLVSGISGQLYKQFALTIAASTVLSGINSLTLTPALCALMLQPTKPSKFPLYKGFNRL 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R     +  +    I  +  +         +  G     V   
Sbjct: 518 YDKTQGMYDKTVGYLLQRPFAAVISYAAFTIIAVLLFVKWPSTFIPEEDDGYFLAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   +   + +     ++                 G+         ++K       
Sbjct: 578 PASSLERTQEVGKQINALLDTYPEVKDYIGISGFSVMGGGEQSNAATYFVVLKNWDERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T           +  +    +  ++
Sbjct: 638 KKHTAAAIVDRFNMEAYGIQEAEVFAMV 665



 Score = 41.2 bits (94), Expect = 0.80,   Method: Composition-based stats.
 Identities = 17/132 (12%), Positives = 38/132 (28%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L S     +S  +        +  Q         T V   +++             T  
Sbjct: 272 DLGSASYSVVSQLDGKPTAAIAIYQQPGSNSLDVSTGVKAKMQELSQNFPAGVQYNVTLD 331

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +    +     + + +L+       W   +    T+ + +  TL   +LFG 
Sbjct: 332 TTDVIHASIDEVMVTFFETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAIMSLFGF 391

Query: 717 EFNLTAVAAVLT 728
             N   +  ++ 
Sbjct: 392 SINTLTLFGLIL 403


>gi|262371077|ref|ZP_06064399.1| IISP family preprotein translocase membrane subunit [Acinetobacter
           johnsonii SH046]
 gi|262313963|gb|EEY95008.1| IISP family preprotein translocase membrane subunit [Acinetobacter
           johnsonii SH046]
          Length = 324

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 163/310 (52%), Gaps = 3/310 (0%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            M  +      ++    D   I FM+       +SI+ +I S+  +FT GLN G+DF GG
Sbjct: 1   MMTDVTQQDSKKYGRPDDERVIDFMKIALPAAILSIVLTIGSLFFIFTKGLNLGLDFTGG 60

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           I   +  ++PV  + V + L      D   Q    +++ +VR+  Q     A   + + +
Sbjct: 61  ISAELNYSKPVKSADVSAALTKAGFHDPVVQTIGSDRDLIVRMPVQE--DTAAEDLTKTI 118

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            + +      +++   ++VG ++  EL  +    V ++ + ML+Y+ IRF++  A+GA+ 
Sbjct: 119 TQAVQLPGNSASVNKVDVVGGQVGNELYIRSAGAVALALLLMLVYVTIRFEFKLAMGAVL 178

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L  D+  T+G FA+    F+LT +AA+L LIG+S+ND +VV DR+R+N +      S  
Sbjct: 179 SLFHDVVVTIGIFAMMQWPFDLTVLAAILALIGFSLNDNIVVSDRIRENFRKI-RGASPL 237

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           ++++ ++ ETL R+++TSM   + V+ M + GG  +  F++ M  G+ V   SSI+I   
Sbjct: 238 EIVNIALTETLRRTIHTSMTLLLVVISMMILGGDGLKWFSVAMFVGVFVGTYSSIYIGTA 297

Query: 819 ILLFIYDWRA 828
             L+    R 
Sbjct: 298 FALWRGLNRQ 307


>gi|255009386|ref|ZP_05281512.1| putative cation efflux pump [Bacteroides fragilis 3_1_12]
 gi|313147143|ref|ZP_07809336.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313135910|gb|EFR53270.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1040

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 188/688 (27%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALIIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAFY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +    G+   S     +    +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSTASSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         +   +  +       +DQ+   
Sbjct: 111 RVSVAQSSLPEPVVVQGVTVQKQSSNIVMFLTMQAKDSVYDGLYLTNYAQLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-DS 236
                          +    DP  +R    + A++       N        G    + ++
Sbjct: 171 PGVGAVNVMGAGNYSMRVWLDPEAMRIRNLSPAQVYQAIQSQNIEVSAGYIGQPIGKNNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  ++                +    I     G +         I    + 
Sbjct: 231 NAYQYTLNVQGRLT-------------SPEEFGNIIIRTGEGGKMLRLKDIARIDLGSSS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELAQNFPAGVSYNVTLDTTDVIN 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA+++ LG ++   +
Sbjct: 338 ASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMAALGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPKDAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T ++    G   + FA+T+  S ++S   ++++  A+    + + K  +  I       
Sbjct: 458 PTTLISGISGQLYKQFALTIAASTVLSGINSLTLTPALCALFLEHNKPSNFFIYKGFNKV 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L    +    +R     +   I+ +I  I  +         +  G     +   
Sbjct: 518 YDKTQNLYDRIVKGLLIRPGLALISYGIITAIAVILFMKWPSTFVPDEDDGYFIAVIQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  + +     S+                 G+         ++K       
Sbjct: 578 PASSLERTQAVGQKVNRILDSYPEVKDYIGISGFSIMGGGEQSNTGTYFVVLKNWDERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T         +++  +    I  ++
Sbjct: 638 KEHTAAAVVERFNEMAYGIQEAQIFAMV 665



 Score = 38.5 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/146 (10%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + + L  +          ++  +        +   Q    +S+  ++ ++   +++ 
Sbjct: 258 EGGKMLRLKDIARIDLGSSSYNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELA 317

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P     N  +    +    I + +V  + + + +++ I++  + W   +    T+ +
Sbjct: 318 QNFPAGVSYNVTLDTTDVINASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPV 377

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLT 728
            +  TL   A  G   N   +  ++ 
Sbjct: 378 SLIGTLAVMAALGFSINTLTLFGLIL 403


>gi|237713203|ref|ZP_04543684.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406658|ref|ZP_06083207.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643452|ref|ZP_06721266.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CC 2a]
 gi|229446670|gb|EEO52461.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355361|gb|EEZ04452.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641200|gb|EFF59404.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CC 2a]
          Length = 1051

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 178/683 (26%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSIAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSQDSVYNSLYLTNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-S 236
                          +    DP  +R    +  ++       N        G    +D +
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPQQVYQSIQSQNVEVSAGYIGQPIGQDNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  +                 +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRL-------------KSPEQFGDIIIRREQNGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L A         V         
Sbjct: 278 YSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAASFPKGVSYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I T A+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T+++    G   + FA+T+  S ++S F ++++  A+    +   K  +  I       
Sbjct: 458 PTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSNFFIYKGFNKA 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R     V    L  I  +  +         +  G     V   
Sbjct: 518 YDKTQGVYDKIVKWLLQRPGMALVSYGALTVIAVLLFMHWPSTFIPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  + +     S+                 G+         ++K       
Sbjct: 578 PAASLERTQAVGDKVNAILDSYPEVKNYIGISGFSIMGGGEQSNSATYFVVLKNWDERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+  
Sbjct: 638 KEHTAAAVVNRFNGEAYMTIQAA 660



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/541 (8%), Positives = 146/541 (26%), Gaps = 43/541 (7%)

Query: 329  GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                +         K     +      +       G   +  G + ++  ++ ++     
Sbjct: 502  KSKPSNFFIYKGFNKAYDKTQGVYDKIVKWLLQRPGMALVSYGALTVIAVLLFMHWPSTF 561

Query: 389  VADFSIFLNVILTL------------------ALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            + D      + +                    A+L           I+G  +  G    +
Sbjct: 562  IPDEDDGYFIAVVQLPPAASLERTQAVGDKVNAILDSYPEVKNYIGISGFSIMGGGEQSN 621

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +      ++  + +      +  +                + A V     G GA  G  +
Sbjct: 622  SATYFVVLKNWDERKGKEHTAAAVVNRFNGEAYMTIQAAEVFAMVPPAIPGLGASGGLQL 681

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +     +        + A++        + S+     +        I    ++     +
Sbjct: 682  QLEDRRNLGPTEMQQAINALLASYHSKPALGSVSSQYQANVPQYFLNIDRDKVQFMGIAL 741

Query: 551  GISILFSICSICLLFTHGL-----NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
                      +   + +        Y +  +   Q   + +  + LSV  +  E +    
Sbjct: 742  NDVFSTLGYYMGAAYVNDFVEFGRIYQVKIEARDQAQRVIDDVLKLSVPNAAGEMVPFSS 801

Query: 606  ISFQNFDGEKNFLVRLQ-----------YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +       ++ + R                  +    + +E + K+           + 
Sbjct: 802  FTKVEEQLGQDQINRYNMYSTASLTCNVAPGSSTGQAIQEVEALFKEQLGDEFGYEWTSV 861

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +         ++ +I++    L+       W   + A+  L + +   +    + 
Sbjct: 862  AYQETQAGNTTTIVLVMALIVAF---LVLAAQYESWTSPVAAVIGLPVALLGAMIGCLIM 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ LI  S  + +++ +  R          S R+   ++ +  L   + 
Sbjct: 919  GTPVSIYTQIGIILLIALSAKNGILIVEFARDFRAE---GNSIREAAFEAGHVRLRPILM 975

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS A  + V+P+      G     +    + FG+ +    +          +   + + +
Sbjct: 976  TSFAFVLGVMPLLFATGAGAQSRIALGAAVVFGMAMNTLLATIYIPNFYELMQKLQERFS 1035

Query: 832  R 832
            +
Sbjct: 1036 K 1036



 Score = 42.4 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 78/245 (31%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S  N        +  Q           V   +++         + 
Sbjct: 267 DIARIDLGSASYSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAASFPKGVSY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  T    
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSN 507


>gi|238028497|ref|YP_002912728.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Burkholderia glumae BGR1]
 gi|237877691|gb|ACR30024.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Burkholderia glumae BGR1]
          Length = 1063

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIILMLAGIAAIF-----TLPISQYPTIAPP-------------SIQISATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S     + ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGTSIITLTFAAGTNPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++     +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLKVTKSSSSFLLVLAFVSEDGSMNKYDLANYVASHVEDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T + ++      N    G   G        
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPNKLTNYSLTPSDVTAAITAQNVQIAGGQIGGTPAVPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + ++  +                 +    +        +        +       
Sbjct: 229 VLQATITEQTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAKMNLGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L        +             
Sbjct: 276 NFDTKYNNQPTAGLGIQLATNANALQTANAVRAKIDELSKYFPHGLVVKYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++S +G ++   S+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMSAVGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMSEERLSPKEATKKAMGQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I          
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALVLTPALCATI-----LKPIPKGHHEEKTG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F R+R             S   L  +
Sbjct: 511 FFGWFNRNFNRSRDKYHSGVHHVIKRSGRWLIIY 544



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 77/216 (35%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ Q  PG S  Q         +        +         +   +    
Sbjct: 816  ERYNGISAMEIQGQAAPGKSTGQAMAAMEKIAQKLPNGIGYSWTGLSFQELQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+        +   +   ++    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE--LQMGEKMGPVEAALEAARLRLRPILMTSLAFILGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFFV 1026



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 78/220 (35%), Gaps = 6/220 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +  +     L        +++     +     ++++  
Sbjct: 258 SQVRLKDVAKMNLGGENYNFDTKYNNQPTAGLGIQLATNANALQTANAVRAKIDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   +           R  I + +  ++   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVKYPYDTTPFVRLSIEEVVKTLLEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMSAVGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMSEERLSPKEATKKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
            +  G  V  ++      +P+A  GGSV      F++ + 
Sbjct: 436 GQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIV 475



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 62/518 (11%), Positives = 131/518 (25%), Gaps = 36/518 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WL+I   +I  +GLL        +      P         +     G +       
Sbjct: 536  RSGRWLIIYLVVIVAVGLLFV------RLPKSFLPDEDQGLMFVIVQTPSGSTQETTART 589

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +  +  L      + S     G       Q    + +   D   +++   KV   +  
Sbjct: 590  LKNIADYLLNDEKSIVESAFTVNGFSFAGRGQNSGLVFVRLKDYSTRQHADQKVQALIGR 649

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  +        ++         +  +     ++  +A      ++  R   +G++    
Sbjct: 650  MFGRYAAYKDAIVVPFNPPSIPELGTAAGFDFELTDNAGLGHDALMAARNQLLGMAAKDP 709

Query: 182  QRLGSH----RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               G          Q   + D  +   L  T A +     +                   
Sbjct: 710  TLQGVRPNGLNDTPQFKVDIDREKANALGVTAASIDQTFSIAW----------------- 752

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 V + ++  G           P    P     +                       
Sbjct: 753  -ASQYVNNFLDTDGRIKKVYVMADAPFRATPQDMDIWYVRNGSGGMVPFSAFASGHWTYG 811

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +    I    A          A    A      +      +       +L 
Sbjct: 812  SPKLERYNGISAMEIQGQAAPGKSTGQAMAAMEKIAQKLPNGIGYSWTGL----SFQELQ 867

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            S S      AI   +V + L  +             + L VI  L   +L G    +   
Sbjct: 868  SGSQAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVIGALLAATLRGLENDVFFQ 927

Query: 418  AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             G++  +GL+  + IL+ E  RE +  +      +           I  +++  ++  + 
Sbjct: 928  VGLLTTVGLSAKNAILIVEFARELQMGEKMGPVEAALEAARLRLRPILMTSLAFILGVLP 987

Query: 477  LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            L      G  +       +   +L + F AI ++    
Sbjct: 988  LAISNGAGSASQHAIGTGVIGGMLTATFLAIFMIPMFF 1025


>gi|224368692|ref|YP_002602854.1| RND efflux pump (AcrB/AcrD/AcrF family protein) [Desulfobacterium
           autotrophicum HRM2]
 gi|223691408|gb|ACN14691.1| RND efflux pump (AcrB/AcrD/AcrF family protein) [Desulfobacterium
           autotrophicum HRM2]
          Length = 1047

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/691 (9%), Positives = 181/691 (26%), Gaps = 51/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL   +        ++++P   P               + +    
Sbjct: 8   RPIFAWVIAIVIMLAGLFAVV-----TLPVEQYPKIAPP-------------SISISTSY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                  ++      +   L       +      +     ITL+F      +    +V  
Sbjct: 50  PGASAEVVENSVAQVIEQNLTGIDYLRYFSSSSDSNGQLTITLTFEPEADPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q V S L    +   +      +  ++++    +       + S  I     + +   
Sbjct: 110 KVQAVKSLLPQAVQTQGVTVKKASKSFLLVAGIYSEDGKMSGNDISDYIKSNMAETLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    +P +L       + ++      N        G        
Sbjct: 170 QGVGDLTVFGDQ-HSMRIWINPEKLHSYSLMPSDITAAIQARNVDVTSGQLGGSPAVAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                      +        +        +       
Sbjct: 229 QLNASISVQSKL-------------KTVADFENILVKVNGDGSQVRLGDLARVELGSQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    +     +   T          L A                    
Sbjct: 276 SRIARYKGMEASAMAVTLSTGANALETASRVKAKIKELSAFMPQGLNVAYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+++ +   +  L+   ++ + ++ T  +LS  G ++ + ++
Sbjct: 336 SIEEVVKTLIEAIVLVFFVMYLFLQNFRATLIPTIAVPVVLLGTFGVLSAFGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +         S   +     S+    +    +      + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMGETGLSPKEATRQSMSQITGALVGIAMVLSAVFIP 455

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIF----------IIRYKKMKSI 523
           + FF    G   R F+IT+  ++++S+  A+ +  A+             + +       
Sbjct: 456 MAFFSGATGAIYRQFSITIVSAMVLSVIVALVLTPALCSTFLKPVKKGHNLGKKGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +  +   +    +     RA  + +   I+                  + +G + + +
Sbjct: 516 NKSFDAGKSIYRKSVGYAATRAVRFIIVYLIIVGGLVYMFKGLPTAFLPDEDQGTLMMMI 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A     +    ++++ ++   ++ +  +    F V      G+          +     
Sbjct: 576 SAPPGATMERTLASIKKVEAYFLNEEAENVNGLFTVTGFSFAGNGQNVGLGFVQLTDWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              P            K    +    +   I
Sbjct: 636 RQRPDQKSAAIAQRAMKNLYGIKDAMVYAFI 666



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 92/237 (38%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  +       Q      +    E + +        +++     ++   K+++  +
Sbjct: 258 SQVRLGDLARVELGSQSYSRIARYKGMEASAMAVTLSTGANALETASRVKAKIKELSAFM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  +I + + +   +++  + +   L     + + + 
Sbjct: 318 PQGLNVAYPYDTTPFVKLSIEEVVKTLIEAIVLVFFVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  + FG   N+  + A++  IG  V+D +VV + +     +  T +S ++   +S+
Sbjct: 378 GTFGVLSAFGFSINVLTMFAMVLAIGLLVDDAIVVVENV--ERVMGETGLSPKEATRQSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  V  +M      +PMA + G+       F+I +   +V++   ++ +   +
Sbjct: 436 SQITGALVGIAMVLSAVFIPMAFFSGATGAIYRQFSITIVSAMVLSVIVALVLTPAL 492



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 81/269 (30%), Gaps = 13/269 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +       V  S     +       +   N    +  L         
Sbjct: 776  QFRMLPQDINLWYVRNSRGEMVPFSSFAKGIWDYGSPKLERYNGSSSQEILGAPAPGVSS 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++ +     I    T  + E         L+        +S + + + +   
Sbjct: 836  GEAMEIIEDLAQNLPQGIGLDWTGISYEERMAGSQTTLLYS------VSLLFVFLCLAAL 889

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W      +  + L +  ++G     G+  ++     +LT IG +  + +++    ++
Sbjct: 890  YESWSIPFSVMLVVPLGVIGSVGATLWAGLSNDVYFQIGLLTTIGLAAKNAILIVAFAKE 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
               LY            +  + L   + TS A  + V P+AV    G +   +  I +  
Sbjct: 950  ---LYEKGTDLVTAAKIAAEQRLRPILMTSFAFILGVTPLAVANGAGSASQNAIGIGVIG 1006

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G+  A S +I       + +     K  +
Sbjct: 1007 GMAAATSLAIIFVPLFFVILEKMTEKRKK 1035


>gi|152987450|ref|YP_001350571.1| RND multidrug efflux transporter MexD [Pseudomonas aeruginosa PA7]
 gi|150962608|gb|ABR84633.1| RND multidrug efflux transporter MexD [Pseudomonas aeruginosa PA7]
          Length = 1043

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 83/705 (11%), Positives = 185/705 (26%), Gaps = 65/705 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GLL+       +  + ++PS  P               + +   
Sbjct: 7   KRPNFAWVVALFISLAGLLVI-----SRLPVAQYPSVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +   +  L   L   +G+  F      N   +I ++F      +     V 
Sbjct: 49  YPGASAKVLVDSVTSVLEESLNGAKGLLYFESTNNSNGTAEIVVTFEPGTDPDLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             L+   +++        +         +++   N  +    S          R   +++
Sbjct: 109 NRLKKAEARMPQAVLTQGVEVEQTSAGFLLIYALNYKEGVQRSDTTALGDYAARNINNEL 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   +S      N       FG     
Sbjct: 169 RRLPGVGKLQFFSS-EAAMRVWIDPQKLVGFGLSIDDVSNAIRGQNVQVPAGAFGSAPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SEQELSATLAVKGTLDN-------------PQEFGQVVLRANEDGSLVRLADVARLELGK 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T        A L A         V       
Sbjct: 275 ESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPEDMQYSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + ++ TL ++ LLG ++ +
Sbjct: 335 VDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLMVMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAEATAKAMRQVSGAIVGITLVLSAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F  G      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLKPIPEGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +              +    RA  + +  + L +      L         +  G + +
Sbjct: 515 AFNRGFARLTGHYSLLNSKLVARAGRFMLVYAGLVAALGYFYLRLPEAFVPAEDLGYMVV 574

Query: 582 GVLANRPVDLS-------------VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            V                        R  ++S+ +      +  G+   L    ++    
Sbjct: 575 DVQLPPGASRMRTDATGEELERFLETREAVDSVFLVSGFSFSGQGDNAALAFPTFKDWSE 634

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +        + E   L        V P     L   G   +
Sbjct: 635 RGPGQSAAAEIAAVNEHFALPDDGTIMAVSPPPIDGLGNSGGFAL 679



 Score = 80.9 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +  +IS +                 +++    +++    +++   P 
Sbjct: 262 VRLADVARLELGKESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 DMQYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S  +   K++ +
Sbjct: 382 LMVMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAEATAKAMRQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A   G   VI   F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIVGITLVLSAVFLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 10/140 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             W   L     LI+ I       A+   G+  ++     ++T+IG S  + +++ +  ++
Sbjct: 890  SWSIPLS--VMLIVPIGAIGAVLAVMVTGMANDVYFKVGLITIIGLSAKNAILIVEFAKE 947

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
                       RD   ++        + TSMA  + V+P+A+  G+      +    +  
Sbjct: 948  LW---EKGHGLRDAAIEAARLRFRPIIMTSMAFILGVVPLALASGAGAASQRAIGTGVIG 1004

Query: 804  GIVVAASSSIFIAAPILLFI 823
            G++ A    +       +++
Sbjct: 1005 GMLSATFLGVLFVPICFVWL 1024


>gi|53713684|ref|YP_099676.1| putative cation efflux pump [Bacteroides fragilis YCH46]
 gi|52216549|dbj|BAD49142.1| putative cation efflux pump [Bacteroides fragilis YCH46]
          Length = 1040

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 188/688 (27%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALIIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAFY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +    G+   S     +    +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSTASSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         +   +  +       +DQ+   
Sbjct: 111 RVSVAQSSLPEPVIVQGVTVQKQSSNIVMFLTMQAQDSVYDGLYLTNYAQLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-DS 236
                          +    DP  +R    + A++       N        G    + ++
Sbjct: 171 PGVGAVNVMGAGNYSMRVWLDPEAMRIRNLSPAQIYQAIQSQNIEVSAGYIGQPIGKNNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  ++                +    I   E G +         I    + 
Sbjct: 231 NAYQYTLNVQGRLT-------------SPEEFGNIIIRTEEGGKMLRLKDVARIDLGSSS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELAQNFPAGVSYNVTLDTTDVIN 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA+++ LG ++   +
Sbjct: 338 ASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMAALGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPKEAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T ++    G   + FA+T+  S ++S   ++++  A+    + + K  +  I       
Sbjct: 458 PTTLISGISGQLYKQFALTIAASTVLSGINSLTLTPALCALFLEHNKPSNFFIYKGFNKV 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L    +    +R     +   I+ ++  I  +         +  G     +   
Sbjct: 518 YDKTQNLYDRIVKGLLIRPGLALISYGIITAVAVILFMKWPSTFVPDEDDGYFIAVIQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++    +     S+                 G+         ++K       
Sbjct: 578 PASSLERTQAVGRKVNQILDSYPEVKDYIGISGFSIMGGGEQSNTGTYFVVLKNWDQRKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T         +++  +    I  ++
Sbjct: 638 KEHTAAAVVERFNEMAYGIQEAQIFAMV 665



 Score = 38.5 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + + L  V          ++  +        +   Q    +S+  ++ ++   +++ 
Sbjct: 258 EGGKMLRLKDVARIDLGSSSYNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELA 317

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P     N  +    +    I + +V  + + + +++ I++  + W   +    T+ +
Sbjct: 318 QNFPAGVSYNVTLDTTDVINASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPV 377

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLT 728
            +  TL   A  G   N   +  ++ 
Sbjct: 378 SLIGTLAVMAALGFSINTLTLFGLIL 403


>gi|325105860|ref|YP_004275514.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pedobacter saltans DSM 12145]
 gi|324974708|gb|ADY53692.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pedobacter saltans DSM 12145]
          Length = 1056

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/542 (12%), Positives = 156/542 (28%), Gaps = 33/542 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  ++  IG +           + ++P+  P                     
Sbjct: 8   KRPVTAMVISILLLIIGGISI-----YTLPISQYPNIAPPTVT---------VSSTYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    +   +          +      ++IT++F      +     V   + 
Sbjct: 54  DAQTVEQTVTTPIESQINGTPGMIYMQSNSTSDGGSRITVTFEVGTDIDIATLDVQNRVG 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L    ++  + T       +++           A   S        D +   +  
Sbjct: 114 IAEPALPEAVRRLGVTTRKANSDILMMVSLVSPNGTRDAKFLSNYANLYLKDALMRVKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +        +    D ++L  L  + A ++      N+   G   G R    +   +
Sbjct: 174 GDVMSFG-QPFSMRVWLDANKLANLGLSPADVTAAIQEQNSRMPGGSVGGRPQETAQVFE 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y V    ++S +                   I                 +          
Sbjct: 233 YPVITDSDLSSVE-------------DFENIIVKTGTDGSIVLLKDVARVELGQFNYSTA 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +        + S     +   T +        L+         +V    V     S  
Sbjct: 280 TKVNGMESTGMMISQTPGGNAVETADGIYKALDQLKKAFPKDVDYVVGYETVSVVHASID 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+F+ +   +  L+   +I ++++ T    +L G ++   ++   
Sbjct: 340 SVIHTLVEALILVTLVVFIFLQNWRATLIPVLAIPVSIVGTFIFFNLFGFSINNLTMLAF 399

Query: 421 VLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E ++        S   + +       + +    +      V + F
Sbjct: 400 VLAIGIVVDDAIVVVEAVQHYIDSYKMSAKEATERAMKDITAPVIAIALILAAVFVPVGF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G      + FAIT+ +S+++S F A+S+  A+   +++   +          F+    
Sbjct: 460 IPGMVGQLYQQFAITIAVSVMLSAFIALSLTPALCSLLLKPTAVTKESTGLNKLFYKFNV 519

Query: 537 CI 538
             
Sbjct: 520 WF 521



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLT 728
            +I S   + +++ +      W      + ++ L +   +    L   I+ N+ A   ++T
Sbjct: 874  MIFSLCIIFVFLLLASLYESWSVPFSILLSVPLGVFGAILTLILIPRIDNNIFAQIGLVT 933

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +IG +  + +++ +  ++        +   +   +++   L   + TS A  + ++P+ +
Sbjct: 934  IIGLAAKNAILIVEFAKE---RVDIGMPLYEATLEAVKLRLRPIIMTSFAFILGIIPLMI 990

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              G+      +    +  G+  A   +IFI   + + I        ++
Sbjct: 991  STGAGAFARQTIGWTVFGGMTAATLLAIFIVPVLFVVITRLAYGKKKL 1038



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 92/243 (37%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V            + +    E   ++  Q   G++V     +     ++ +  
Sbjct: 259 SIVLLKDVARVELGQFNYSTATKVNGMESTGMMISQTPGGNAVETADGIYKALDQLKKAF 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +    I   I  ++ + I + + ++I  + W   L  +  + + I 
Sbjct: 319 PKDVDYVVGYETVSVVHASIDSVIHTLVEALILVTLVVFIFLQNWRATLIPVLAIPVSIV 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  FF LFG   N   + A +  IG  V+D +VV + ++  +  Y   +S ++  ++++
Sbjct: 379 GTFIFFNLFGFSINNLTMLAFVLAIGIVVDDAIVVVEAVQHYIDSY--KMSAKEATERAM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +     +  ++      +P+       G +   FAI +A  ++++A  ++ +   +   
Sbjct: 437 KDITAPVIAIALILAAVFVPVGFIPGMVGQLYQQFAITIAVSVMLSAFIALSLTPALCSL 496

Query: 823 IYD 825
           +  
Sbjct: 497 LLK 499


>gi|265764008|ref|ZP_06092576.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263256616|gb|EEZ27962.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 1040

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 188/688 (27%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALIIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAFY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +    G+   S     +    +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSTASSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         +   +  +       +DQ+   
Sbjct: 111 RVSVAQSSLPEPVIVQGVTVQKQSSNIVMFLTMQAQDSVYDGLYLTNYAQLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-DS 236
                          +    DP  +R    + A++       N        G    + ++
Sbjct: 171 PGVGAVNVMGAGNYSMRVWLDPEAMRIRNLSPAQIYQAIQSQNIEVSAGYIGQPIGKNNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  ++                +    I   E G +         I    + 
Sbjct: 231 NAYQYTLNVQGRLT-------------SPEEFGNIIIRTEEGGKMLRLKDVARIDLGSSS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELTQNFPAGVSYNVTLDTTDVIN 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA+++ LG ++   +
Sbjct: 338 ASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMAALGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPKEAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T ++    G   + FA+T+  S ++S   ++++  A+    + + K  +  I       
Sbjct: 458 PTTLISGISGQLYKQFALTIAASTVLSGINSLTLTPALCALFLEHNKPSNFFIYKGFNKV 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L    +    +R     +   I+ ++  I  +         +  G     +   
Sbjct: 518 YDKTQNLYDRIVKGLLIRPGLALISYGIITAVAVILFMKWPSTFVPDEDDGYFIAVIQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++    +     S+                 G+         ++K       
Sbjct: 578 PASSLERTQAVGRKVNQILDSYPEVKDYIGISGFSIMGGGEQSNTGTYFVVLKNWDQRKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T         +++  +    I  ++
Sbjct: 638 KEHTAAAVVERFNEMAYGIQEAQIFAMV 665



 Score = 38.5 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 53/146 (36%), Gaps = 1/146 (0%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + + L  V          ++  +        +   Q    +S+  ++ ++   +++T
Sbjct: 258 EGGKMLRLKDVARIDLGSSSYNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELT 317

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P     N  +    +    I + +V  + + + +++ I++  + W   +    T+ +
Sbjct: 318 QNFPAGVSYNVTLDTTDVINASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPV 377

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLT 728
            +  TL   A  G   N   +  ++ 
Sbjct: 378 SLIGTLAVMAALGFSINTLTLFGLIL 403


>gi|92117345|ref|YP_577074.1| preprotein translocase subunit SecF [Nitrobacter hamburgensis X14]
 gi|91800239|gb|ABE62614.1| protein translocase subunit secF [Nitrobacter hamburgensis X14]
          Length = 340

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 118/334 (35%), Positives = 197/334 (58%), Gaps = 17/334 (5%)

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
               ++    A+ +V  ++ +      ++ +            D     F R R     I
Sbjct: 1   MTHWILLGLGALIVVLTIVSWFGLLPSLRIVP-----------DDTHFDFTRFRRISFPI 49

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRSNLESLQIGDISFQNF 611
           S + SI +I L FTHGLN+GIDFKGG  L V A     D++ +R+ L  L +G++  Q F
Sbjct: 50  SAVLSIVAITLFFTHGLNFGIDFKGGTLLEVQAKSGEADIATMRTTLNKLGLGEVQLQQF 109

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            G    L+R+  QPG   AQ   ++ V+  +         +  E+VGP++S EL+  G++
Sbjct: 110 GGPTEVLIRVAEQPGGDAAQQDAVQKVRGAL---GESVNYRRVEVVGPRVSGELLAYGML 166

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           G+I++ + +LIY+W RF+W FALGA+   + DI  T+GF ++  ++F+LT++AA+LT++G
Sbjct: 167 GLILAILGILIYLWFRFEWQFALGAMVANVHDIVLTIGFMSISQVDFDLTSIAALLTILG 226

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           YS+ND VV+YDR+R+ ++ Y   +   +L+++SIN TL RS+ T +   +++L + ++GG
Sbjct: 227 YSLNDTVVIYDRIREMLRRY-KKLPMPELLNESINSTLSRSIITHVTVTLALLALLLFGG 285

Query: 792 SVIGSFAIPMAFG-IVVAASSSIFIAAPILLFIY 824
           + I SF   M FG ++V   +SIFIAAPIL+++ 
Sbjct: 286 AAIHSFTAVMMFGVVLVGTYTSIFIAAPILIYLG 319


>gi|253565632|ref|ZP_04843087.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251945911|gb|EES86318.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 1040

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 188/688 (27%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALIIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAFY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +    G+   S     +    +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSTASSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         +   +  +       +DQ+   
Sbjct: 111 RVSVAQSSLPEPVIVQGVTVQKQSSNIVMFLTMQAQDSVYDGLYLTNYAQLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-DS 236
                          +    DP  +R    + A++       N        G    + ++
Sbjct: 171 PGVGAVNVMGAGNYSMRIWLDPEAMRIRNLSPAQIYQAIQSQNIEVSAGYIGQPIGKNNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  ++                +    I   E G +         I    + 
Sbjct: 231 NAYQYTLNVQGRLT-------------SPEEFGNIIIRTEEGGKMLRLKDVARIDLGSSS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELAQNFPAGVSYNVTLDTTDVIN 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA+++ LG ++   +
Sbjct: 338 ASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMAALGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPKEAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T ++    G   + FA+T+  S ++S   ++++  A+    + + K  +  I       
Sbjct: 458 PTTLISGISGQLYKQFALTIAASTVLSGINSLTLTPALCALFLEHNKPSNFFIYKGFNKV 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L    +    +R     +   I+ ++  I  +         +  G     +   
Sbjct: 518 YDKTQNLYDRIVKGLLVRPGLALISYGIITAVAVILFMKWPSTFVPDEDDGYFIAVIQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++    +     S+                 G+         ++K       
Sbjct: 578 PASSLERTQAVGRKVNQILDSYPEVKDYIGISGFSIMGGGEQSNTGTYFVVLKNWDQRKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T         +++  +    I  ++
Sbjct: 638 KEHTAAAVVERFNEMAYGIQEAQIFAMV 665



 Score = 38.5 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + + L  V          ++  +        +   Q    +S+  ++ ++   +++ 
Sbjct: 258 EGGKMLRLKDVARIDLGSSSYNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELA 317

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P     N  +    +    I + +V  + + + +++ I++  + W   +    T+ +
Sbjct: 318 QNFPAGVSYNVTLDTTDVINASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPV 377

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLT 728
            +  TL   A  G   N   +  ++ 
Sbjct: 378 SLIGTLAVMAALGFSINTLTLFGLIL 403


>gi|116620401|ref|YP_822557.1| protein-export membrane protein SecD [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223563|gb|ABJ82272.1| protein-export membrane protein SecD [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 539

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 159/533 (29%), Positives = 268/533 (50%), Gaps = 27/533 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ N     +  ++  +  +  +   +P+S  D   +    + I LGLDL+GG+HLVLE+
Sbjct: 1   MKKNLTARTVIIVVTILICVFGI-IGIPKSGADIARNF--SDNIRLGLDLKGGTHLVLEI 57

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D V       ++ L+  LKK+ I   SM            D+         V     
Sbjct: 58  QVQDAVKADADQTAERLKEDLKKQNITWASMDTPD---VAKVEDADNMAITIKGVPATQS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIV-LSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                L  +     L+T T      + L   ++  +    ++++++ I  RIDQ+G++E 
Sbjct: 115 SAFRSLVGERYPTYLLTATSSTDYTMKLKPTDLQDLKVDTVKRAVDTIGNRIDQLGLAEK 174

Query: 180 TIQR----LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK----------- 224
           ++Q+       + +L+QLPG  DP+R ++L+GT A +    V                  
Sbjct: 175 SVQQYGEAGKKYEVLVQLPGVDDPARAKELIGTAAVLEIVDVKEGPFPSREAALSQKGGI 234

Query: 225 ----GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                 +   +     DG Q+ +  K  +              +  K   + S  + G R
Sbjct: 235 LPLGTKLARTKPRGTQDGEQWYLVAKNAVISGREMRNARPGQDEFRKWETNFSLSQDGGR 294

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
           RF   T  NIG  L V+LD ++++   I         +I+G  + E A  L+  LR+GSL
Sbjct: 295 RFGRYTEANIGNKLGVLLDNQLVSVATIQS-KIEDSGRITGLGSEEEAVDLSRYLRSGSL 353

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P  +  ++ER++G  LG+DSI++G  A +AGL+ +++ M+V Y + GL A  ++ LN +L
Sbjct: 354 PAGVVYLQERSIGPSLGADSIHQGLMAGIAGLLAVIVVMLVYYKRSGLNAVLALILNTVL 413

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
            LA +S   A LTLP IAGI+L IG+AVDSN+L+ ERIREE R  +SV  ++D GF +A+
Sbjct: 414 LLAAVSYFHAVLTLPGIAGIILTIGMAVDSNVLIFERIREELRSGKSVIAAVDAGFGKAW 473

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            TI D+++T +++   LF FG G VRGFA+T+ + ++ ++FTA+ + + +  +
Sbjct: 474 WTIVDTHVTTVVSCAFLFLFGEGPVRGFAVTLTIGLIANIFTAVFVSKTIFDY 526



 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 54/385 (14%), Positives = 131/385 (34%), Gaps = 14/385 (3%)

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM-FTAISIVRAMMI 512
               RA  TI +      +A   +  +G    +   +     +        +    A++ 
Sbjct: 153 DTVKRAVDTIGNRIDQLGLAEKSVQQYGEAGKKYEVLVQLPGVDDPARAKELIGTAAVLE 212

Query: 513 FIIRY-KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
            +        S +     +  ++P    +   + R    G        +  +      N 
Sbjct: 213 IVDVKEGPFPSREAALSQKGGILPLGTKLARTKPRGTQDGEQWYLVAKNAVISGREMRNA 272

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS--- 628
                   +     +   D            IG+      D +   +  +Q +  DS   
Sbjct: 273 RPGQDEFRKWETNFSLSQDGGRRFGRYTEANIGNKLGVLLDNQLVSVATIQSKIEDSGRI 332

Query: 629 ----VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                 +  V      +   +           +GP +  + I +G++  I   +A+++ +
Sbjct: 333 TGLGSEEEAVDLSRYLRSGSLPAGVVYLQERSIGPSLGADSIHQGLMAGIAGLLAVIVVM 392

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + +K    L A+  LIL+    L   + F     L  +A ++  IG +V+  V++++R+
Sbjct: 393 LVYYK-RSGLNAVLALILNTVLLLAAVSYFHAVLTLPGIAGIILTIGMAVDSNVLIFERI 451

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           R+ ++   +  S    +D    +     V T +   +S   + ++G   +  FA+ +  G
Sbjct: 452 REELR---SGKSVIAAVDAGFGKAWWTIVDTHVTTVVSCAFLFLFGEGPVRGFAVTLTIG 508

Query: 805 IVVAASSSIFIAAPIL-LFIYDWRA 828
           ++    +++F++  I    +   R 
Sbjct: 509 LIANIFTAVFVSKTIFDYELSGRRQ 533


>gi|110639043|ref|YP_679252.1| multidrug efflux membrane fusion protein [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110281724|gb|ABG59910.1| multidrug efflux membrane fusion protein [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 1030

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 80/690 (11%), Positives = 191/690 (27%), Gaps = 56/690 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G++           +  +PS  P                     
Sbjct: 9   KRPVFTIVINLLLIVFGII-----GYTFLGIREYPSIDPATI---------SVRTNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +        +  Q  + IT+ F   +  E  A+ V   +  
Sbjct: 55  NADIIESQITEPLEKAINAIDGIKSINSTSNQGSSNITIEFNLDKNLEEAANDVRDKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L +D     +V+  + +   ++    +       ++ S         ++       
Sbjct: 115 ATRSLPLDIDAPPVVSKADADSEPIVI-LTVRSNSRDVLQLSDYAENSIAQRLQTIPGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP +L     T A++       N               S     
Sbjct: 174 SVQIYGQKKYAMRLWIDPMKLSSYGLTVAEVKTALNKENVQLPSGKITGANTELSVNTLG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +   ++     G +         +      +    
Sbjct: 234 NLAT--------------------EEQFQNLIIRTQGNKIIRFSDIGKVQLGPENLETQM 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +   +     + +   +      +     A ++          V   N      S + 
Sbjct: 274 TESGTPMVGLAITPQPGTNYIEIANSFYEQLAKIKQELPSDLELNVAVDNTLFIKQSVTE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+I++++              I +++I T  ++ L G ++ + ++  IV
Sbjct: 334 VAETILISLVLVIIIIYLFFRDWGVAFRPLIDIPVSLIATFFIMYLCGFSVNVLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFFF 480
           L  GL VD  I+V E I ++  +  S   +   G +      I  S   A +   V+F  
Sbjct: 394 LATGLVVDDGIVVTENIYKKVEEGMSPIEAAIKGSNEILIPVISISITLAAVFLPVIFLQ 453

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G   R F I +  ++LIS F ++++   +  ++++    K       +  F +    
Sbjct: 454 GFVGQLFREFGIVIASAVLISAFVSLTLTPMLNAYLMKGGVHKKSRFYEWTEPFFVKMNA 513

Query: 539 AI-----QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ------------- 580
                   FM+ ++    I        +                                
Sbjct: 514 MYADALGVFMKRKWISYPIIFGCIGLIVLFYSLLKKETAPYDDRSYLRVQINTPEGASYD 573

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                 + +   V  S  E      I+   F        R+         + R  + +  
Sbjct: 574 YTNRFMQEMTKLVNDSIPEKYINLVITSPGFGSSSVNSGRMIMSLIQPNERHRSQKQIAN 633

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGI 670
           K+T++    +     +          + G+
Sbjct: 634 KLTQLTKKYSEARAMVTEQPTIAVNKKGGL 663



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 8/154 (5%)

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           Y++ R  W  A   +  + + +  T     L G   N+  + A++   G  V+D +VV +
Sbjct: 350 YLFFR-DWGVAFRPLIDIPVSLIATFFIMYLCGFSVNVLTLLAIVLATGLVVDDGIVVTE 408

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAI 799
            +    K     +S  +   K  NE L   +    T  A F+ V+ +  + G +   F I
Sbjct: 409 NI---YKKVEEGMSPIEAAIKGSNEILIPVISISITLAAVFLPVIFLQGFVGQLFREFGI 465

Query: 800 PMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
            +A  ++++A  S+ +   +    +     K +R
Sbjct: 466 VIASAVLISAFVSLTLTPMLNAYLMKGGVHKKSR 499



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      I T+ + +   L    LFG  +N+ +    + LIG    + +++ +      
Sbjct: 876  SFLDPFIIILTVPMAVGGALFSLWLFGQTWNIFSQIGTIMLIGLVTKNGILIVEFAN--- 932

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
            +L     S  + I ++    L   + TS+A  +  LP+A+  G+         + +  G 
Sbjct: 933  QLKEQGKSKAEAILEASEARLRPILMTSLAIALGALPIALALGAAAKSRIGMGVVIVGGT 992

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            + A   ++F+              N  +
Sbjct: 993  LFALVLTLFVIPAFYAMWSKEHKHNTAL 1020


>gi|332994462|gb|AEF04517.1| RND family efflux transporter [Alteromonas sp. SN2]
          Length = 1036

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/629 (10%), Positives = 179/629 (28%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   G++           L  +P   P                     
Sbjct: 9   KRPVFATVINLLLIIFGVVAI-----SMLALREYPDIDPPIV---------SVSTKYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S ++       +    ++ IT+ F  SR  +  A+ V   +  
Sbjct: 55  SANIVETRITQLLEDRISGIEGIKNITSTSTNGRSDITIEFKLSRDIDAAANDVRERVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L        +      + +IV        +  + +E +    R  +D++ +++   
Sbjct: 115 ALNNLPDQADPPEVSKADSDQSAIVWYNLRSTNL--NTMELTDYAERFLVDRLSVADGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D + +     T A +       N                     
Sbjct: 173 RVQIGGGRRYAMKVFLDRNAMAARGITVADVESVISSENVELPAGEVESLDRNFEVRVAR 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +                                        N+           
Sbjct: 233 TFLSPED-------------------FAALTVAVGDDGYLVRLGEIANVELAAEDDETEF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +++ +      +A      +          +    +      S + 
Sbjct: 274 RGDGVNMIGLGIIKQSKANTLDVARSAKAQIRKIEETLPDNIFIVPSYDSSVFIEASINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   +V+IV+++ +   +  L+   ++ ++++    ++  LG ++ L ++  +V
Sbjct: 334 VYETLAIAMLMVVIVIYLFLGNVRATLIPAVTVPVSLVAAFIVMYALGFSINLLTLLAMV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +   G       +  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVVLENISRRIEMGEPPILAAFRGAREVGFAVIATTLVLISVFVPLVFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FA+ +  ++  S FTA+++   M   I++ +   +     + + F   +  
Sbjct: 454 GNVGRLFTEFALAIAAAVAFSSFTALTLSPMMASKILKKRTRSAGFGAWMDKRFHALENR 513

Query: 539 AIQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +       +     + + +                   + +G   + + +        
Sbjct: 514 YFKSLGSTIHQPFIMVLLLIVSVVALVQISEKLPSEFVPKEDRGNFYILMNSQEGASFES 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
             +NL+ ++   + ++        LVR  
Sbjct: 574 NAANLKLIEDILMPYRESGEIGRLLVRTP 602



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 65/160 (40%), Gaps = 7/160 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I   +++     + +  +F+ W   L  + T+ L +          G+  N+ +   ++ 
Sbjct: 853  IYVFMLALAVTYLILAAQFESWIHPLVIMLTVPLALIGAFIGLYFAGMTLNIYSQIGLVM 912

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG +  + +++ +      +L    ++F D + ++  + L   V T      S LP+  
Sbjct: 913  LIGLAAKNGILIVEFAN---QLRDAGMNFEDALRRAAAQRLRPIVMTGFTTVFSSLPLVF 969

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G        + +A G++V+A  ++++      ++  
Sbjct: 970  ASGPGAESRMVIGMVIAAGVLVSAFMTLYVVPTAYSWLAR 1009



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 72/210 (34%), Gaps = 4/210 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  + +   + +  +  F+        L  ++    +++   R  +   +KI E +P 
Sbjct: 254 VRLGEIANVELAAEDDETEFRGDGVNMIGLGIIKQSKANTLDVARSAKAQIRKIEETLPD 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +                I +    + I+ + ++I I++        L    T+ + +   
Sbjct: 314 NIFIVPSYDSSVFIEASINEVYETLAIAMLMVVIVIYLFLGNVRATLIPAVTVPVSLVAA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   NL  + A++  IG  V+D +VV + +    +             +   E
Sbjct: 374 FIVMYALGFSINLLTLLAMVLAIGLVVDDAIVVLENI---SRRIEMGEPPILAAFRGARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                + T++      +P+    G+V   F
Sbjct: 431 VGFAVIATTLVLISVFVPLVFLEGNVGRLF 460


>gi|124514658|gb|EAY56170.1| SecF export membrane protein [Leptospirillum rubarum]
          Length = 321

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/295 (30%), Positives = 148/295 (50%), Gaps = 5/295 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSV 593
             +I FM  R   + IS +F +  +  L        N GIDF GG  + V   + V L  
Sbjct: 7   NPSIDFMGKRKISLTISAVFLLLGLVALLQISRGKANLGIDFVGGTAVQVHFQKNVSLQS 66

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VRS LE      +  QN     + L+R + +  D    +  L +   +        TI +
Sbjct: 67  VRSLLEKDGFHGVQIQNIQSSSDILIRTKVEKKDGSPVSSAL-LKDLRSGFPGNPMTILS 125

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP I  EL  K  + ++ S   +++YI  RF++ F + A  +   ++   LG   L
Sbjct: 126 ATEIGPTIGNELAGKAFLAILYSIFGIIVYIAFRFEFRFGVAAAISTFHNVMAVLGILYL 185

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G+E NL  V A+LTL GYS+ D VVV+DR+R+ ++   T  S  +LI++ IN+ L R+V
Sbjct: 186 LGVEINLLVVTALLTLAGYSLTDTVVVFDRIREQLRR-ATRQSMEELINQGINQVLSRTV 244

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             S    + ++ +  +GG VI  F++ +  G+V+   +SIF+A+P+LL I   + 
Sbjct: 245 VVSSTVVLVLVALFFFGGPVIHDFSLALLLGVVIGTFASIFVASPLLLVIPKGKK 299


>gi|301163396|emb|CBW22946.1| putative drug resistance transport-related membrane protein
           [Bacteroides fragilis 638R]
          Length = 1040

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/688 (11%), Positives = 188/688 (27%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALIIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAFY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +    G+   S     +    +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSTASSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         +   +  +       +DQ+   
Sbjct: 111 RVSVAQSSLPEPVIVQGVTVQKQSSNIVMFLTMQAQDSVYDGLYLTNYAQLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-DS 236
                          +    DP  +R    + A++       N        G    + ++
Sbjct: 171 PGVGAVNVMGAGNYSMRVWLDPEAMRIRNLSPAQIYQAIQSQNIEVSAGYIGQPIGKNNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  ++                +    I   E G +         I    + 
Sbjct: 231 NAYQYTLNVQGRLT-------------SPEEFGNIIIRTEEGGKMLRLKDVARIDLGSSS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELAQNFPAGVSYNVTLDTTDVIN 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA+++ LG ++   +
Sbjct: 338 ASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMAALGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPKEAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T ++    G   + FA+T+  S ++S   ++++  A+    + + K  +  I       
Sbjct: 458 PTTLISGISGQLYKQFALTIAASTVLSGINSLTLTPALCALFLEHNKPSNFFIYKGFNKV 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L    +    +R     +   I+ ++  I  +         +  G     +   
Sbjct: 518 YDKTQNLYDRIVKGLLVRPGLALISYGIITAVAVILFMKWPSTFVPDEDDGYFIAVIQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++    +     S+                 G+         ++K       
Sbjct: 578 PASSLERTQAVGRKVNQILDSYPEVKDYIGISGFSIMGGGEQSNTGTYFVVLKNWDQRKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T         +++  +    I  ++
Sbjct: 638 KEHTAAAVVERFNEMAYGIQEAQIFAMV 665



 Score = 38.5 bits (87), Expect = 5.2,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + + L  V          ++  +        +   Q    +S+  ++ ++   +++ 
Sbjct: 258 EGGKMLRLKDVARIDLGSSSYNVVSKLKGHPTAAIAIYQQPGSNSLDVSKGVKAKMQELA 317

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P     N  +    +    I + +V  + + + +++ I++  + W   +    T+ +
Sbjct: 318 QNFPAGVSYNVTLDTTDVINASIDEVLVTFLETTLLVVLVIFLFLQNWRAVIIPCITIPV 377

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLT 728
            +  TL   A  G   N   +  ++ 
Sbjct: 378 SLIGTLAVMAALGFSINTLTLFGLIL 403


>gi|298292238|ref|YP_003694177.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Starkeya
           novella DSM 506]
 gi|296928749|gb|ADH89558.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Starkeya
           novella DSM 506]
          Length = 1100

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/574 (12%), Positives = 164/574 (28%), Gaps = 41/574 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G +           + ++P   P               + +    
Sbjct: 10  RPIFASVISIVVMILGGVA-----FVSLPVAQYPDIAPPV-------------VNVTGQY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +   EG+   S     +    I ++F      +    +V  
Sbjct: 52  PGASAETVADTVVSPIEQQINGVEGMIYISSNSTADGRFSIAVTFDIGTDLDIAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +  T      +++           ++  S     Q  DQ+   
Sbjct: 112 RVSTATPRLPQEVQQIGVTVTKSSPDILMVVSLFSPDDSRDSLFISNYANLQIKDQLQRV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++++ L  T   ++      N      +     + +  
Sbjct: 172 QGVGSITVFGSRDYAMQVWLDPTKMQALNLTATDVTAALRAQNLQVASGVLNAPPVPEQL 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V     +S              T +   +I   + G           I       
Sbjct: 232 AFQVAVRTLGRLS--------------TPEEFGNIVVRQSGNAVVRLRDIARIDIEGQDN 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                  +              +   T +      A +                      
Sbjct: 278 SSISYFDSKPSVALGIFQLPGSNALSTGQAIEQEIARISKDFPQGLAYSTAYNPTQFIAE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV+IV+ + +   +  ++   +I +++I T  ++SL G +L   S+
Sbjct: 338 SVRAVEDTILEAIVLVVIVVVLFLQTWRAAIIPIIAIPVSLIGTFFIMSLFGFSLNNLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E +        S   +          A   I     +  I +
Sbjct: 398 FGLVLAIGIVVDDAIVVVESVEHNISTGLSPRDAAYKTMDEVGGALVAISLVLASVFIPS 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFL 533
             +    G   R FA+T+  S LIS+  ++++  AM   +++    +          F  
Sbjct: 458 AFIPGISGEFYRQFALTIAGSTLISLLVSLTLSPAMCALLLKPHPPEGHRPPWYARPFTG 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F         ++      ++ +L  +
Sbjct: 518 FFYYFNKGFNGVSRGYGWLTGKLVRFAVIVLVVY 551



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 62/219 (28%), Gaps = 17/219 (7%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                           ++I                           I    +  + + + +
Sbjct: 836  DVQPGTSQGQAIQKMQQIAAETLPDGFAYEWTALAFQQVRAGNTAIFAFALGVVFVFLVL 895

Query: 685  WIRFK---WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
              +++      A+  I  + L I  ++G   L G + N+ +    + LIG +  + +++ 
Sbjct: 896  AAQYESLTLPLAVILIVPMCL-IAASVGIL-LRGQDNNILSQVGFIVLIGLAAKNAILIV 953

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFA 798
            +  +   +L             +    L   + TS A    V+P+ +    G  +  +  
Sbjct: 954  EFAK---QLEDRGEDRFSAATHAAQLRLRPIIMTSFAFIFGVVPLVIATGAGAELRQALG 1010

Query: 799  IPMAFGIVVAASSSIFIAAPILLF------IYDWRAKNA 831
              +  G++      +       +         + R    
Sbjct: 1011 TAVFSGMIGVTVFGLLFTPTFYVIARWIASFGERRRARK 1049


>gi|317475150|ref|ZP_07934417.1| AcrB/AcrD/AcrF family protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908603|gb|EFV30290.1| AcrB/AcrD/AcrF family protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1010

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/687 (12%), Positives = 194/687 (28%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLSTVLTLIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q  ++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGSSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +       + I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N            +  +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPIDVKNAVDNENVELPSGSIEGNTVELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E G R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLILKEDGNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGIVVIPQPGANHIQIADAVYERMEKMKKDLPEDVHYSYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKQTVYEAFILVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIERGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ +S        FF   + I
Sbjct: 453 GMTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREKQSWFYRKTEPFFEGMNRI 512

Query: 539 AIQ----FMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+R R+  +  +    +       +       ++ +  I +       V    
Sbjct: 513 YSRSLAAFLRKRWIALPFTAATILIIGFLWNYIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E + +   S              G  N  + L+        Q  V E + K + +
Sbjct: 573 IRDYTEDINLLVDSITPDAEAVTARVSSGSGNIRITLKDMQDRDYTQMEVAEKLSKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        L G   N+ ++ A++  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +  ++   +   E     + T++       P+    G        F+I ++  
Sbjct: 410 YVRIERGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMDGMTGRLFREFSIVVSGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   R K +
Sbjct: 470 VIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMQAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +V+   +++I   I  ++   R+K  
Sbjct: 983  LVSTLLTMYIVPAIYSYVSTNRSKLK 1008


>gi|256371734|ref|YP_003109558.1| protein-export membrane protein SecF [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008318|gb|ACU53885.1| protein-export membrane protein SecF [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 349

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/315 (25%), Positives = 154/315 (48%), Gaps = 11/315 (3%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
               +      I+F+    W   +S++        L   GLN+GIDF+GG+   V A   
Sbjct: 15  WWRRVGAGATRIRFVERARWFWAVSLVVIAVGAAALGIRGLNFGIDFRGGLAWQVSAPT- 73

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + ++  RS L  L +   +  +    ++  + ++     S A+   LE            
Sbjct: 74  LSVTQARSALAGLPLSGTTVVSLGTGQHRTIEVEADLPTSGARAHALENEVAARLAAAAH 133

Query: 649 STIQN--TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                     VGP    ++    +  ++   + + +YI +RF+W  AL A+  +I D+  
Sbjct: 134 QPSSAVAINYVGPTWGSQITDASLKALVAFFVGITLYISLRFEWKMALAALIAVIHDLVV 193

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT---SISFRDLIDK 763
           T+G +AL G +   + V AVLT++GYS+ D +V++DR+++N+  +      +++ +++D+
Sbjct: 194 TVGIYALSGFQITPSTVIAVLTVLGYSLYDTIVIFDRIKENVATHVDQAGEMTYSEVVDR 253

Query: 764 SINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           S+N+ L RS+ TS+ A I +L +      + G + + +F + +  G+   A SSI IA+P
Sbjct: 254 SVNQMLARSINTSVVAVIPILSVLVVGAYLLGATTLRNFGLALVVGLTSGAYSSIAIASP 313

Query: 819 ILLFIYDWRAKNARI 833
           IL F+ +   +  ++
Sbjct: 314 ILAFLKEREPRYRQL 328


>gi|189424456|ref|YP_001951633.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Geobacter
           lovleyi SZ]
 gi|189420715|gb|ACD95113.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Geobacter lovleyi SZ]
          Length = 1049

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/671 (11%), Positives = 180/671 (26%), Gaps = 34/671 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+      L  + + ++P+  P                      
Sbjct: 8   RPVFAAVIAIIITLGGLVA-----LKVTPIAQYPNIAPPTVQ---------VSAFYPGAT 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + +        +     N  +T++F      +     V   +  
Sbjct: 54  AEVIANTVAAPIEQQVNGVDGMSYMSSTSASSGNMSLTVTFEPGTDPDMAQVNVQNRVSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            ++ L     +  +      +  +++            +          +D I       
Sbjct: 114 ASALLPDVVSQQGVTVQKRSQSFMMVISVYSPDDRYDPVYLGNYANLYILDAIKRIPGAN 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +     P RL QL  T   ++      N +      G           +
Sbjct: 174 LSSMFPLPDVAMRIWLKPDRLAQLGLTAQDIATAIQQQNKAFGVGSIGQSPSPRGTQQTF 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +V  K  +S                   + I     G+                      
Sbjct: 234 VVTTKGMLS------------DPAEFENIIIRAASAGSALVRLKDVARAELGGKDYSVTT 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +   +   +   T +    L A L+          V          S   
Sbjct: 282 KVNGKKSVAIVVYQQPGANAIETSKQINKLLAGLKKSFPQGMEYKVVLDTSEFTDASIEK 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +   +   ++ + ++ T   +  LG +  + ++ G++
Sbjct: 342 VVHTFFEAVVLVVLVVFLFLQSFRATFIPILAVPIAIVGTYMGILALGFSTNMLTLFGMI 401

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVL 477
           L IGL VD  I+V E +         +   +     S    A   I     +  +    L
Sbjct: 402 LAIGLVVDDAIIVVENVEHNMATYGMTPMEAAKKAMSELTGALIAIVLVLGSVFLPVAFL 461

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSRFFLI 534
               G   + FA+T+ +S+++S   A+++  A+   I++    +              L 
Sbjct: 462 GGMTGTLYKQFAVTIAISMVLSGVVALTLSPALAARILKPGHGEKKGFFKWFEDRFNRLT 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +          +G+ +   + ++ LL    +      +       +     D S +
Sbjct: 522 ELYTSGVRWLINHRSIGLGLFCGVLALVLLLFRIVPGSFVPEEDQGYLFVGTMMPDASSL 581

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                         Q      +      Y   D   +     +               + 
Sbjct: 582 ERTTAVSDRAVQFAQTNKAMGDITQINGYSLIDGSVKDNAGLLFAALKPYSEREGKGTDA 641

Query: 655 EIVGPKISREL 665
             V   + R+L
Sbjct: 642 ASVQKDLGRKL 652



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 86/261 (32%), Gaps = 11/261 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                             ++  +      + +  +    +  +      + L   Q     
Sbjct: 773  PDYRDKPNDLTQIYVRSSSGSMIPLSAMATIRYVAGPSLLPRFNGFPASKLNGSQASGYS 832

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            S      +E V  K+       +         K          +      I + + +  +
Sbjct: 833  SGQAISAMEEVAGKVLPEGYGYSWSGQAFEEKKAGNTST----MAFAFGLIMVFLILAAQ 888

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++ W   +G + ++   +   L F  + G+E ++     ++TL+G S  + +++ +    
Sbjct: 889  YEKWSLPVGVVLSVPFALCGALLFTWVRGLENDVYFQVGLVTLVGLSAKNAILIIEFAAD 948

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
            N+K     +   +   ++    L   V TS+A  +  +PMA+    G + + +    +  
Sbjct: 949  NLK---KGMEPAEAAIEAARLRLRPIVMTSLAFILGCVPMAIAHGAGANSLRAIGTGVIG 1005

Query: 804  GIVVAASSSIFIAAPILLFIY 824
            G++ +   + F      + + 
Sbjct: 1006 GMLASTLVASFFVPLFFVLLE 1026



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 7/135 (5%)

Query: 689 KWYFALGAITTLILDITKT-LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            +      I  + + I  T +G  AL G   N+  +  ++  IG  V+D ++V + +  N
Sbjct: 363 SFRATFIPILAVPIAIVGTYMGILAL-GFSTNMLTLFGMILAIGLVVDDAIIVVENVEHN 421

Query: 748 MKLYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           M  Y   ++  +   K+++E    L   V    + F+ V  +    G++   FA+ +A  
Sbjct: 422 MATY--GMTPMEAAKKAMSELTGALIAIVLVLGSVFLPVAFLGGMTGTLYKQFAVTIAIS 479

Query: 805 IVVAASSSIFIAAPI 819
           +V++   ++ ++  +
Sbjct: 480 MVLSGVVALTLSPAL 494


>gi|329954862|ref|ZP_08295879.1| multidrug efflux pump BpeF [Bacteroides clarus YIT 12056]
 gi|328526966|gb|EGF53977.1| multidrug efflux pump BpeF [Bacteroides clarus YIT 12056]
          Length = 1039

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/688 (10%), Positives = 180/688 (26%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LGILPIAQYPDITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSDE-LRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAQTVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++      D      +  S       +DQ+   
Sbjct: 111 RVSVAQSSLPAPVVVQGVTVQKQSSNIVMFLTMKSDNKNYDGLYLSNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
                          +    DP  +R    + A +       N        G     D+ 
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPDAMRIRNLSPADVYQAIQAQNVEVSAGNVGQPIGNDNR 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  K  ++                +    I   + G +        +I    A 
Sbjct: 231 NAYQYSLTVKGRLT-------------SPEEFGNIILRTDSGGKILRLRDVAHINLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YSVVSQLNGKPTAAIAIYQQPGSNSLDVSKGVKTKMQELSQNFPAGIQYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA++SL G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAIMSLFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           +   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENSMRLLDTGRYTARQAVTEAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID------IN 526
            T ++    G   + FA+T+  S ++S   ++++  A+   +++  K             
Sbjct: 458 PTTLVSGISGQLYKQFALTIAASTVLSGINSLTLTPALCALMLQPAKPSKFPLYKGFNRL 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R        ++   I  +  +         +  G     V   
Sbjct: 518 YDKTQGVYDKVVGYLLQRPFVAMASYAVFTIIAVLLFVKWPSTFIPEEDDGYFLAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  + +     ++                 G+         ++K       
Sbjct: 578 PASSLERTQAVGKQINALLDTYPEVKNYIGISGFSVMGGGEQSNAATYFVVLKNWNERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T           +  +    +  ++
Sbjct: 638 KKHTASAVVDRFNMEAYGIQEAEVFAMV 665



 Score = 40.8 bits (93), Expect = 0.89,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 37/132 (28%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL S     +S  N        +  Q           V   +++             T  
Sbjct: 272 NLGSASYSVVSQLNGKPTAAIAIYQQPGSNSLDVSKGVKTKMQELSQNFPAGIQYNVTLD 331

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +    +     + + +L+       W   +    T+ + +  TL   +LFG 
Sbjct: 332 TTDVIHASIDEVMVTFFETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAIMSLFGF 391

Query: 717 EFNLTAVAAVLT 728
             N   +  ++ 
Sbjct: 392 SINTLTLFGLIL 403


>gi|304317004|ref|YP_003852149.1| protein-export membrane protein SecF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778506|gb|ADL69065.1| protein-export membrane protein SecF [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 312

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/303 (30%), Positives = 150/303 (49%), Gaps = 5/303 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    I  +        IS +  +  +  LF+ GLN+G+DF GG+      +R V 
Sbjct: 1   MRWNNIKWNIDVIGKTKVWFTISGIIILAGLIALFSMGLNWGLDFTGGMVAEFNIHRTVT 60

Query: 591 --LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             ++   +N+        S     G  N  V +     D   +T ++  +K K       
Sbjct: 61  TTINNEITNILRSNGVKESQVKAIGPNNTHVSITTPSLDDKTRTAIINALKSKYKLSDKD 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + +++ V   I +E+    ++   ++A+ MLIYI  RF +     A+  LI DI   +
Sbjct: 121 --LVSSQNVSASIGKEMQFGTLLASAVAALLMLIYIGFRFNFEMGAAAVLALIHDILIMI 178

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             +AL  I  +   VAA+LT+ GYS+ND +V++DR+R N+KL   S S++++ + S+NET
Sbjct: 179 SAYALLRIVVDTPFVAAILTVFGYSINDTIVIFDRIRDNIKLMRKS-SYKEIANVSVNET 237

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + RS+ T M   I ++ M  +G + I SFA+P+  GI   A SSIFIA+P+ +   D   
Sbjct: 238 MTRSINTVMTVLIMLVLMYFFGPASIKSFALPLLVGITSGAYSSIFIASPLWIIFKDREG 297

Query: 829 KNA 831
           KN 
Sbjct: 298 KNR 300


>gi|86150294|ref|ZP_01068520.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85839119|gb|EAQ56382.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 290

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/260 (32%), Positives = 139/260 (53%), Gaps = 3/260 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR RF  + +S +    SI LL+  GL YGIDF GG  + +       ++ +R  LE
Sbjct: 10  YDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +            G    +       G +   +  +      + +      ++  ++VGP
Sbjct: 70  NQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ + +S IA+LIYI +RF+W FAL AI + I D+  TLG  +LF I+ N
Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AAVLT++GYS+ND ++++DR+R+ +K  +       +I++S++ TL R+V TS   
Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIFDRIREGIKT-SKKTELAPIINESVSATLSRTVLTSGLT 246

Query: 780 FISVLPMAVWGGSVIGSFAI 799
             +V+ +  +GG +I  F  
Sbjct: 247 LATVVILYFFGGEMIQGFFF 266


>gi|298484015|ref|ZP_07002184.1| multidrug efflux RND transporter MexF [Bacteroides sp. D22]
 gi|298269796|gb|EFI11388.1| multidrug efflux RND transporter MexF [Bacteroides sp. D22]
          Length = 1051

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 178/683 (26%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSIAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSQDSVYNSLYLTNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-S 236
                          +    DP  +R    +  ++       N        G    +D +
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPQQVYQSIQSQNVEVSAGYIGQPIGQDNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  +                 +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRL-------------KSPEQFGDIIIRREQNGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L A         V         
Sbjct: 278 YSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAASFPKGVSYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I T A+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T+++    G   + FA+T+  S ++S F ++++  A+    +   K  +  I       
Sbjct: 458 PTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSNFFIYKGFNKA 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R     V    L  I  +  +         +  G     V   
Sbjct: 518 YDKTQGVYDKIVKWLLQRPGMALVSYGALTVIAVLLFMHWPSTFIPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  + +     S+                 G+         ++K       
Sbjct: 578 PAASLERTQAVGDKVNAILDSYPEVKNYIGISGFSIMGGGEQSNSATYFVVLKNWDERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+  
Sbjct: 638 KEHTAAAVVNRFNGEAYMTIQAA 660



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/541 (8%), Positives = 146/541 (26%), Gaps = 43/541 (7%)

Query: 329  GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                +         K     +      +       G   +  G + ++  ++ ++     
Sbjct: 502  KSKPSNFFIYKGFNKAYDKTQGVYDKIVKWLLQRPGMALVSYGALTVIAVLLFMHWPSTF 561

Query: 389  VADFSIFLNVILTL------------------ALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            + D      + +                    A+L           I+G  +  G    +
Sbjct: 562  IPDEDDGYFIAVVQLPPAASLERTQAVGDKVNAILDSYPEVKNYIGISGFSIMGGGEQSN 621

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +      ++  + +      +  +                + A V     G GA  G  +
Sbjct: 622  SATYFVVLKNWDERKGKEHTAAAVVNRFNGEAYMTIQAAEVFAMVPPAIPGLGASGGLQL 681

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +     +        + A++        + S+     +        I    ++     +
Sbjct: 682  QLEDRRNLGPTEMQQAINALLASYHSKPALGSVSSQYQANVPQYFLNIDRDKVQFMGIAL 741

Query: 551  GISILFSICSICLLFTHGL-----NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
                      +   + +        Y +  +   Q   + +  + LSV  +  E +    
Sbjct: 742  NDVFSTLGYYMGAAYVNDFVEFGRIYQVKIEARDQAQRVIDDVLKLSVPNAAGEMVPFSS 801

Query: 606  ISFQNFDGEKNFLVRLQ-----------YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +       ++ + R                  +    + +E + K+           + 
Sbjct: 802  FTKVEEQLGQDQINRYNMYSTASLTCNVAPGSSTGQAIQEVEALFKEQLGDEFGYEWTSV 861

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +         ++ +I++    L+       W   + A+  L + +   +    + 
Sbjct: 862  AYQETQAGNTTTIVLVMALIVAF---LVLAAQYESWTSPVAAVIGLPVALLGAMIGCLIM 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ LI  S  + +++ +  R          S R+   ++ +  L   + 
Sbjct: 919  GTPVSIYTQIGIILLIALSAKNGILIVEFARDFRAE---GNSIREAAFEAGHVRLRPILM 975

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS A  + V+P+      G     +    + FG+ +    +          +   + + +
Sbjct: 976  TSFAFVLGVMPLLFATGAGAQSRIALGAAVVFGMAMNTLLATIYIPNFYELMQKLQERFS 1035

Query: 832  R 832
            +
Sbjct: 1036 K 1036



 Score = 42.4 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 78/245 (31%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S  N        +  Q           V   +++         + 
Sbjct: 267 DIARIDLGSASYSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAASFPKGVSY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  T    
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSN 507


>gi|322835503|ref|YP_004215529.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
 gi|321170704|gb|ADW76402.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
          Length = 1038

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 193/687 (28%), Gaps = 47/687 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G++           + ++P   P               + ++  
Sbjct: 8   RRPVFAWVIAILIMMAGIMAI-----RTLPVAQYPDVAPP-------------SVKIKAT 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   L+      +   L            S       IT++F      +    +V 
Sbjct: 50  YSGANAETLENSVTQVIEQQLTGLDNLLYFSSSSSSDGSVDITVTFKQGTNADTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   S+L  + ++  +  T  +   +++         + + + +  ++    D +  
Sbjct: 110 NKVQQAESRLPTEVQEAGVTVTKSQSSFLLIMAVYDKTDKTSSSDIADWLVSNMQDPLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP++L       + +       N        G      S
Sbjct: 170 VSGVGSLQVFGA-EYAMRIWLDPTKLAAYDLMPSDVETAIEAQNVQISAGKIGGLPSSTS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  +  +                 +    I     G           +      
Sbjct: 229 QQLTATVRAQSRL-------------QTPEQFRNIIVKGNTGGAVVRISDIARVEMGSED 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +   T        +  +            + +     
Sbjct: 276 YTASSQLNGHPAAGMAVMLSPGANALDTATLVKNTISEYQRSMPKGYDVAYPKDSTEFIK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+++ +   +  L+   ++ + ++ T  +L+L G ++   +
Sbjct: 336 VSVEDVIKTLIEAIVLVIVVMYLFMQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +    R        + +         +    +      +
Sbjct: 396 LFAMVLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN----PL 528
            + FFGG      R F++T+  ++++S+  A+++  A+    +R+K   +         L
Sbjct: 456 PMAFFGGSTGVIYRQFSVTIISAMILSVVVALTLTPALCGAFLRHKPQATRGFFGGFNRL 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                      +  ++ R   + +        + +L        +  +   ++ V    P
Sbjct: 516 YSRTEQRYENGVTHVQRRPVAMALIYGAIAALMGVLMWQLPTSFLPSEDQGEVMVQYTLP 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
              +  R+   + ++ +          N +  +         Q   +  V  K  +  P 
Sbjct: 576 AGATANRTEAVNSRVTEWFLGKEKANTNVIFTITGFNFSGSGQNAGMAFVSLKNWDERPG 635

Query: 649 STIQNTEIVGPKISR--ELIRKGIVGV 673
           +      + G  +     +    ++ +
Sbjct: 636 AVNTAQAVAGRAMRDLAVIRDAKVIAM 662



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 91/235 (38%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +S +       +    S Q        +  +     +++    +++    +    +P 
Sbjct: 261 VRISDIARVEMGSEDYTASSQLNGHPAAGMAVMLSPGANALDTATLVKNTISEYQRSMPK 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +I + + +++ +++  +     L     + + +  T
Sbjct: 321 GYDVAYPKDSTEFIKVSVEDVIKTLIEAIVLVIVVMYLFMQNLRATLIPALAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F++ +   ++++   ++ +   +
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMILSVVVALTLTPAL 493



 Score = 41.2 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 70/219 (31%), Gaps = 9/219 (4%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
             ++G  ++ ++ +   G S                           +     S + +   
Sbjct: 814  RYNGSTSYEIQGENTDGYSSGAAMAKMEALADKLPAGSTWAWSGLSLQEKLASGQALSLY 873

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             + +++  + +     +   W      I  + L +        L G+  ++    A+LT 
Sbjct: 874  AISILVVFLCLA---ALYESWSVPFSVILVIPLGLLGASLAAELRGLNNDVYFQVALLTT 930

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG S  + +++ +   +         +       +    L   + TS+A    V+P+AV 
Sbjct: 931  IGLSSKNAILIVE-FAE--AALKQGSTLTAAALSAARTRLRPILMTSLAFIAGVMPLAVA 987

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               G +   +    +  G V A   +IF      + +  
Sbjct: 988  TGAGANSRIAIGTGIIGGTVTATLLAIFFVPLFFVLVKK 1026


>gi|120611197|ref|YP_970875.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acidovorax
           citrulli AAC00-1]
 gi|120589661|gb|ABM33101.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax citrulli AAC00-1]
          Length = 1056

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/573 (12%), Positives = 159/573 (27%), Gaps = 41/573 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   G +       PQ  + R+P+  P               + L   
Sbjct: 7   RRPVFAWVIALFIVLFGAIAI-----PQLPIARYPAVAPPA-------------VSLFAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   L       +   L           S+    + +IT +F      E     V 
Sbjct: 49  YPGATPQTLNDSVVSLIERELSGVKNLLYFESSVDTSGSAQITATFKPGTNPELAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V  +L    +++ L   +     ++L            +  +  + R  + ++  
Sbjct: 109 NRIKAVEPRLPQAVRQSGLQVESAASGFLMLIGMTSRDGRYDEVGLNDYMARNIVQELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP+RL         ++      N        G       
Sbjct: 169 IDGVGRVQLFGA-EQAMRVWVDPARLLSYGLAMGDVTQAIEQQNAQVAPGRVGDAPTLPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S                +    +        +        +      
Sbjct: 228 QRVTVPLTVQGQLS-------------TPEQFAAIVLKAGADGSKVVLRDVARVELGAQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                     V   A        +   T +      A L           V         
Sbjct: 275 YAFANRENGRVATSAAIQLSPGANAVRTAQAVQDRLAELARTMPAGMEVSVPFNTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T A    LV  V+F+ +   ++ L+      + ++ T  ++ + G ++ + +
Sbjct: 335 ISIEKVLHTLAEAMVLVFAVMFLFLQNIRYTLIPAIVAPIALLGTFTVMLVAGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           +    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMAAEGLSPRDATVRAMREITGAVVGITLVLTAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      R F ++M +SIL S F A+++  A+   ++R       +       F
Sbjct: 455 PMAFATGSVGVIYRQFTLSMAVSILFSAFLALTLTPALCATLLRPVDPGHHERRGFFGAF 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
                   +   AR   +       + +  L+ 
Sbjct: 515 NRGFDRLSRGYAARVARLAGRSGRMMVAFALVC 547



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 76/204 (37%), Gaps = 12/204 (5%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-W 685
            + A    L  + + +   + +S   NT         +++      +++    M +++  
Sbjct: 302 TAQAVQDRLAELARTMPAGMEVSVPFNTAPFVKISIEKVLHTLAEAMVLVFAVMFLFLQN 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           IR+    A+ A   L      T     + G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 362 IRYTLIPAIVAPIAL----LGTFTVMLVAGFSINVLTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPM 801
               +    +S RD   +++ E  G  V  ++    +V     +    +      F + M
Sbjct: 417 -ERLMAAEGLSPRDATVRAMREITGAVVGITL-VLTAVFIPMAFATGSVGVIYRQFTLSM 474

Query: 802 AFGIVVAASSSIFIAAPILLFIYD 825
           A  I+ +A  ++ +   +   +  
Sbjct: 475 AVSILFSAFLALTLTPALCATLLR 498



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 57/143 (39%), Gaps = 6/143 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            ++  + + +  L+   +   W   L  +  + L +   +    L G+  ++     ++T+
Sbjct: 868  LLMALSALVVFLVLAALYESWSIPLAVMLVVPLGLVGAVAAVMLRGLPNDVFFKVGMITI 927

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG S  + +++ +  R   +L++      D    +    L   + TS+A  + V+P+ + 
Sbjct: 928  IGLSAKNAILIVEFAR---QLHSEGRGLLDAAVTAARLRLRPILMTSLAFALGVVPLMLA 984

Query: 790  GG---SVIGSFAIPMAFGIVVAA 809
             G       +    +  G+V   
Sbjct: 985  SGASAETQHAIGTGVFGGMVSGT 1007


>gi|329961844|ref|ZP_08299858.1| RND transporter, HAE1 family [Bacteroides fluxus YIT 12057]
 gi|328531284|gb|EGF58128.1| RND transporter, HAE1 family [Bacteroides fluxus YIT 12057]
          Length = 1010

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 90/687 (13%), Positives = 191/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLSTVLTLIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPVKMSGYGITPMDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E G R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLILKEDGNRIVRFSDIGRAEVGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +              ++              N      S   
Sbjct: 273 KMNGVPMVGIVVIPQPGANHIEIANAVYDRMEKMQKDLPDDVHYNYGFDNTKFIRASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  +V
Sbjct: 333 VKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFME 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F++ +  S++IS F A++    +   ++  ++ +S        FF   + I
Sbjct: 453 GTTGRLFREFSLVVSGSVIISSFAALTFTPMLATKLLIKRERQSWFYRKTEPFFEGMNRI 512

Query: 539 A----IQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSV 593
                  F++ R+  +  + +       L  T       ++ +  I +  +    V    
Sbjct: 513 YSRSLATFLKHRWIALPFTAVTIALIGYLWNTIPAEMAPLEDRSQISINTMGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S              G  N  + L+        Q  V E + K + +
Sbjct: 573 IRDYTEDINQLVDSIIPDAEAVTARVSSGSGNVRITLKDMKERDYTQMEVAEKLSKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 74/197 (37%), Gaps = 7/197 (3%)

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
              KI +     T +       K  RE     +   I++ + + + +  +F+ +   L  +
Sbjct: 815  MDKIAKETLDDTFRTALTGDSKEYRESSSSLMFAFILAIVLIYLILAAQFESFKDPLIIM 874

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             T+ L I   L F     I  N+ +   ++ LIG    + +++ +      +        
Sbjct: 875  LTVPLAIAGALIFMYFSNITMNIFSQIGIIMLIGLVAKNGILIVEFAN---QKQEVGEDK 931

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIF 814
               I  +  + L   + TS +  + +LP+A   G            +  G++V+   +++
Sbjct: 932  MQAIKDASLQRLRPILMTSASTILGLLPLAFATGEGCNQRIAMGTAVVGGMLVSTLLTMY 991

Query: 815  IAAPILLFIYDWRAKNA 831
            I   I  ++   R+K  
Sbjct: 992  IVPAIYSYVSTNRSKLK 1008



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 85/250 (34%), Gaps = 7/250 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           NR V  S +              +        +V +     + +     +    +K+ + 
Sbjct: 250 NRIVRFSDIGRAEVGPADIKSYMKMNGVPMVGIVVIPQPGANHIEIANAVYDRMEKMQKD 309

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDI 704
           +P     N      K  R  I +    V  + + ++I I      W   L     + + +
Sbjct: 310 LPDDVHYNYGFDNTKFIRASIDEVKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSL 369

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
                   L G   N+ ++ AV+  +G  V+D +V+ + +          +  ++   + 
Sbjct: 370 IGAFFVMYLAGFSINVLSMLAVVLAVGLVVDDAIVMTENI---YVRIEKGMPPKEAGIEG 426

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
             E     + T++       P+    G+       F++ ++  +++++ +++     +  
Sbjct: 427 AKEIFFAVISTTITLVAVFFPIVFMEGTTGRLFREFSLVVSGSVIISSFAALTFTPMLAT 486

Query: 822 FIYDWRAKNA 831
            +   R + +
Sbjct: 487 KLLIKRERQS 496


>gi|171060383|ref|YP_001792732.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Leptothrix
           cholodnii SP-6]
 gi|170777828|gb|ACB35967.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Leptothrix cholodnii SP-6]
          Length = 1058

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/620 (11%), Positives = 166/620 (26%), Gaps = 50/620 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G          +  + ++P+  P               +V+    
Sbjct: 9   RPIFAWVIALFILILGGAAI-----TKLPVAQYPTVAPP-------------SIVINTAY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKKE-GIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   L    G+             +IT +F           ++  
Sbjct: 51  PGASAQVLEDSVLAVIEQELNGAPGLIYMESSADANGSGQITATFEPGTDVSIAQIEIQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L     +  +     +   ++             +       R    ++   
Sbjct: 111 RLSRATPRLPSSVVQQGVRVDKARANFLLFVMLTSKNPAYDPVALGDYAARNIQPELLRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L  L  T A ++      N        G      + 
Sbjct: 171 PGVGQAQLFGT-ERAMRIWIDPAKLVGLGLTPADVNAAIRAQNIQVSAGSIGGLPSVAAQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    +++ +              +    +                 I       
Sbjct: 230 STYATVTVSGQLASVA-------------QFGEILLRSNADGSSVRLKDVARIELGAQTY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +      A L+          V   +      
Sbjct: 277 ATSARLNGVTATGIGVQLAPTGNALATAQAIKARLAELQQFMPEGVSYDVPYDSSRFVSI 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + + ++ T A++  LG ++ + ++
Sbjct: 337 SIEQVVKTLIEAIALVFLVMFLFLQNFRYTLIPTIVVPVALLGTFAVMLTLGFSINVLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   V 
Sbjct: 397 FGMVLAIGILVDDAIVVVENVERIMAEEGLSPVEATRKAMGQITGAIIGITVVLVSVFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           + FF    G   R F+++M  S+L S   A+++  A+   +          +       +
Sbjct: 457 MAFFAGSVGNIYRQFSLSMVASMLFSALMALTLTPALCATLLKPIDPGHHEKKGFFGWFN 516

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        +A    +A  + V   ++ +                +  G + + V 
Sbjct: 517 RAFKRTTHGYEGLVARIIRKAGRYLVIYGVVLAAVGFMYTRLPTSFLPNEDAGYLIVNVQ 576

Query: 585 ANRPVDLSVVRSNLESLQIG 604
                 +    + +  ++  
Sbjct: 577 LPPGAAIERTEAVMAQVEDF 596



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 90/241 (37%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q    S +        +       G+++A  + ++    ++ + +P 
Sbjct: 261 VRLKDVARIELGAQTYATSARLNGVTATGIGVQLAPTGNALATAQAIKARLAELQQFMPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I + +  +I +   + + +++  + + + L     + + +  T
Sbjct: 321 GVSYDVPYDSSRFVSISIEQVVKTLIEAIALVFLVMFLFLQNFRYTLIPTIVVPVALLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  V+D +VV + +     +    +S  +   K++ +
Sbjct: 381 FAVMLTLGFSINVLTLFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPVEATRKAMGQ 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GSV      F++ M   ++ +A  ++ +   +   + 
Sbjct: 439 ITGAIIGITVVLVSVFVPMAFFAGSVGNIYRQFSLSMVASMLFSALMALTLTPALCATLL 498

Query: 825 D 825
            
Sbjct: 499 K 499



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 71/190 (37%), Gaps = 8/190 (4%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIY 683
             GD+       + + +       L      E  G     +L   + ++ +  S +A+ + 
Sbjct: 824  SGDTAKGYSTGDAMAEMERLAAQLPPGFGFEWTGQSREEKLSGSQAMILLAFSMLAVFLC 883

Query: 684  IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +   ++ W   +  +  + L I   L    L  +  ++     ++T+IG S  + +++ +
Sbjct: 884  LAALYESWSIPVAVLLVVPLGILGALSGVWLRDMPNDVYFKVGLITIIGLSAKNAILIIE 943

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
              +    L        +   ++ +      + TS A  + VLP+A+    G +   +   
Sbjct: 944  FAKD---LQAEGKGLLEATLEACHLRFRPIIMTSFAFILGVLPLAIASGAGSASQRAIGT 1000

Query: 800  PMAFGIVVAA 809
             +  G++ A 
Sbjct: 1001 GVMGGMITAT 1010


>gi|71735032|ref|YP_275089.1| AcrB/AcrD/AcrF family transporter [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555585|gb|AAZ34796.1| transporter, AcrB/AcrD/AcrF family [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 1047

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 180/692 (26%), Gaps = 55/692 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPSLPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIFTLNYKDGSATKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGYGLSIDDVNAAIRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLHANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPEGVEFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHSEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGRFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V        S       + Q+ +    + +      + L +          +     K 
Sbjct: 575 DVQLPPGATRS---RTDLTAQLLENYMLSREATGAVTMLLGFSFSGMGENAGLAFPTLKD 631

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +E     +         +    L    ++ V
Sbjct: 632 WSERGKGQSAAEEAAAFNQHFSGLADGTVMAV 663



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 84/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R +     +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 57/144 (39%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++    L   V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRLRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A    + I  PI         +  
Sbjct: 1009 ATLLGV-ILVPIFFVWVLSVLRRK 1031


>gi|294139837|ref|YP_003555815.1| RND multidrug efflux transporter MexF [Shewanella violacea DSS12]
 gi|293326306|dbj|BAJ01037.1| RND multidrug efflux transporter MexF [Shewanella violacea DSS12]
          Length = 1040

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 154/544 (28%), Gaps = 32/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ +++  +GL+       P   +  FP   P  +I+                 
Sbjct: 9   RPKFAFVISTVLTLVGLISI-----PILSVSEFPEIAPP-QIN--------VSTNYAGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +   + ++             +  ++++F      +    KV   +Q 
Sbjct: 55  ANIVRDTIAQPLEAEVNGVEDMLYMESKSSNDGSYSLSVTFDVGTDADMAQVKVQNRVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L ++ ++  +    +    +++           ++  +        D +       
Sbjct: 115 AMPRLPIEVQRQGVKVEKQSPNILMVVNLVSPNDSFDSLFITNYAGLNITDSLARQNGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    DP ++  L  T + +       N        G   +      QY
Sbjct: 175 KVQVIGALDYAMRIWLDPDKMASLGVTASDVIASLQEQNIQVAAGRIGAAPVDPEQQFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  +                 +    +        +        +           
Sbjct: 235 TLQTKGRL-------------KDPQEFREVMIRANNDGSKVIVGDVARVELGSQTYDAQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +              L           V          S   
Sbjct: 282 RLNNKPSAIIAVYQSPDANALEVGAAVKAEMEKLSKHFPKDLHYEVLYDTTEFVETSIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+ V+F+ +   +  LV   +I +++I T A L + G ++   S+  ++
Sbjct: 342 VVQTLFISIALVVFVVFIFLQDVRSTLVPAIAIPVSLIGTFAFLLVFGMSINTVSLFALI 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +           I  + +  L         
Sbjct: 402 LAIGIVVDDAIVVVENVTRLMQDEGLSPKEATSKAMKEVTGPIIATTLVLLAVFAPTAVM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     F++T+ +S+LIS   A+++  A+   ++R  K  +   +     +     
Sbjct: 462 PGITGQMYAQFSVTICISVLISSVNALTLSPALCASLLRRPKEHTSGFHATFNKYFTRVT 521

Query: 538 IAIQ 541
               
Sbjct: 522 GKYM 525



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 66/199 (33%), Gaps = 9/199 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +K              +     +  +E+    +  +I     +  Y+++      W  
Sbjct: 835  DAIKAMERAANETLPAGYSYEWTGQTYQEIKAGNLAPLIFGLALVFTYLFLVAQYESWTI 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I  + + I        L G + NL A   ++ LIG +  + +++ +  +   +L  
Sbjct: 895  PFAVILAVPIAILGAFLNIWLVGSDLNLYAQIGLVLLIGLACKNAILIVEFAK---QLRE 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  +  + +        + T+ +  + VLP+ +    G     +    +  G++ A 
Sbjct: 952  EGKSILEAGETAAKLRFRAVLMTAFSFLLGVLPLIIATGAGAGSRRALGYSVFGGMLAAT 1011

Query: 810  SSSIFIAAPILLFIYDWRA 828
                 +     + +   R 
Sbjct: 1012 IVGTLLVPVFYVMMQTMRE 1030



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 97/249 (38%), Gaps = 8/249 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q  D   +  +     +   Q    +++     ++   +K+++  
Sbjct: 260 SKVIVGDVARVELGSQTYDAQGRLNNKPSAIIAVYQSPDANALEVGAAVKAEMEKLSKHF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P            +     I++ +  + IS   ++  ++I        L     + + + 
Sbjct: 320 PKDLHYEVLYDTTEFVETSIKEVVQTLFISIALVVFVVFIFLQDVRSTLVPAIAIPVSLI 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F  +FG+  N  ++ A++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 380 GTFAFLLVFGMSINTVSLFALILAIGIVVDDAIVVVENV--TRLMQDEGLSPKEATSKAM 437

Query: 766 NETLGRSVYTSMAAFISVLP----MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            E  G  + T++   ++V      M    G +   F++ +   +++++ +++ ++  +  
Sbjct: 438 KEVTGPIIATTL-VLLAVFAPTAVMPGITGQMYAQFSVTICISVLISSVNALTLSPALCA 496

Query: 822 FIYDWRAKN 830
            +     ++
Sbjct: 497 SLLRRPKEH 505


>gi|331014504|gb|EGH94560.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 1047

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/632 (11%), Positives = 172/632 (27%), Gaps = 52/632 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P+  P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   +   D      +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLMIFTLSYTGDSANKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAVRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T++        L           V       
Sbjct: 275 QDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPEGVEFSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ LLG ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGKFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            V        +   +  + L+   +S +    
Sbjct: 575 DVQLPPGATRARTDATAQLLENYMLSREATGA 606



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   + ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSVPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLF-IYDWRAKN 830
            A    + +     ++ +   R K 
Sbjct: 1009 ATLLGMVLVPIFFVWVLSVLRRKP 1032


>gi|262202235|ref|YP_003273443.1| protein-export membrane protein SecF [Gordonia bronchialis DSM
           43247]
 gi|262085582|gb|ACY21550.1| protein-export membrane protein SecF [Gordonia bronchialis DSM
           43247]
          Length = 421

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 65/300 (21%), Positives = 132/300 (44%), Gaps = 7/300 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
            + +  R     ++ +  +     +       GIDF+GG Q+ +  +  +    V   + 
Sbjct: 69  FEIVGRRRMWYLVTAVILLICALSIGLRWFTLGIDFEGGTQISIPVSSGITADSVEKVVT 128

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                        G               + Q   +             +   +   V  
Sbjct: 129 DALGSAPESVQTAGSGASETVQVRTEALELTQAEAVTRALVGEFGPGLTTEEISISDVSS 188

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
              RE+  K ++ +++  + + +YI +RF    ++ A+T+L  DI  T G ++L G E  
Sbjct: 189 TWGREITEKMLIALVVFLVIVFVYIAVRFDREMSIAALTSLFFDIVCTAGVYSLVGWEVT 248

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++G+S+ D VVV+D++ +N +  L T+  ++ +  + +IN+TL RS+ T++
Sbjct: 249 PATVIGLLTILGFSLYDTVVVFDKVSENTRSVLQTSRRTYGEQANLAINQTLMRSINTTV 308

Query: 778 AAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + + ++ +      + G   +    +    G+VV A SSIF+AAP+L+ + + R   AR
Sbjct: 309 ISVLPIIALMVIAVWLLGVGTLKDLGLIQLVGVVVGAYSSIFLAAPLLVTLKERRPDIAR 368


>gi|127512780|ref|YP_001093977.1| acriflavin resistance protein [Shewanella loihica PV-4]
 gi|126638075|gb|ABO23718.1| acriflavin resistance protein [Shewanella loihica PV-4]
          Length = 1042

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/637 (11%), Positives = 182/637 (28%), Gaps = 43/637 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISMLLIAFGLVS-----FDKLPLREYPNIDPPIV---------SVQTNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F   R  E  A+ V   + G
Sbjct: 55  SAAVVESRITQLVEDRISGVEGIRNINSSSSDGRSSVTLEFDVGRDIEAAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  +     +      +  I+      D    + ++ +    R  +D+  + +   
Sbjct: 115 LLNNLPEEADPPEVQKANGGDEVIMWLNLVSD--QMNTLQLTDYARRYLVDRFSVIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +    D   L     T + +       N          +    +   + 
Sbjct: 173 NIRIGGGKVYAMRVWIDRQALAARNLTVSDIESVLRSENVELPAGSVESQDRHFTVRLER 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +                       +  +              +           
Sbjct: 233 TFKTAED-------------------FNNLVLAEGEDGYLIKLGDVARVEIGSEEERITF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +       A  L   +               +      S   
Sbjct: 274 RGNREAMIGLGISKQSTSNTLEVARAANALVDKINPTLPAGMEIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFIAMFLVIVVIYLFLGSVRAMLIPALTVPVSLMATFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVVLENIHRRIEEGDSPLKAAYLGSREVAFAVVATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+ M  +++ S   A+++   M   +          ++ ID         
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSLVALTLSPMMCSKLLKPAGQDPWLVRKIDAGMNWLSAG 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +    +        + I   +    +          + +G + L V   +      
Sbjct: 514 YRATLKRAMIHPFIVSSLVVIALGLSGYLMTKVPQEFAPQEDRGSMFLIVNGPQGASFEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           +   ++ ++   +   +    K  L+R     G S  
Sbjct: 574 ISPYMDEIENRLMPLVDSGDIKRLLIRAPRGFGRSAN 610



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 71/191 (37%), Gaps = 9/191 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   +++ +   +   + +    ++ +      +E+ +   + + +  + + +++     
Sbjct: 299 AANALVDKINPTLPAGMEIKRSYDSSVFIEASIKEVYQTLFIAMFLVIVVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T       G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 356 VRAMLIPALTVPVSLMATFIVLYALGYTINLLTLLAMILAIGMVVDDAIVVLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S          E     V T++      +P+    G    +   FA+ M+  ++
Sbjct: 413 RIEEGDSPLKAAYLGSREVAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVAMSAAVI 472

Query: 807 VAASSSIFIAA 817
            ++  ++ ++ 
Sbjct: 473 FSSLVALTLSP 483



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 60/148 (40%), Gaps = 7/148 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L    + G   N+ +   ++ L+G 
Sbjct: 860  LLALGIVFLVLAAQFESYIHPMVIMLTVPLATLGALIGLWVTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    I F   I ++ ++ L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGIEFDTAIIQAASQRLRPILMTGITTAAGAIPLVLAQGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G        + +  GI++A   ++ +  
Sbjct: 977  GAETRFVIGVVVLSGIILATFFTLLVIP 1004


>gi|46580228|ref|YP_011036.1| preprotein translocase subunit SecF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602387|ref|YP_966787.1| preprotein translocase subunit SecF [Desulfovibrio vulgaris DP4]
 gi|46449645|gb|AAS96295.1| protein-export membrane protein SecF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562616|gb|ABM28360.1| protein translocase subunit secF [Desulfovibrio vulgaris DP4]
 gi|311233786|gb|ADP86640.1| protein-export membrane protein SecF [Desulfovibrio vulgaris RCH1]
          Length = 362

 Score =  182 bits (462), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 93/340 (27%), Positives = 152/340 (44%), Gaps = 48/340 (14%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPVDL 591
            I     I F+  R     +SI+  +     +  +G   YGIDF GG  + V  ++PV+ 
Sbjct: 5   FIKYDTKIDFVGMRRIAYVLSIVVILIGFASIAMNGGLRYGIDFAGGAVVQVKFDKPVED 64

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             ++ +L    +  +S Q F       +      G S    R       +        T+
Sbjct: 65  EAIKKSLADADLPGLSIQRFGEGDEDYLIRISDTGSSADSIRQTVSTALQQNLKDVSFTV 124

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK---------------------- 689
           Q  E+VGPK+  +L  K +  +  + + + +YI  RF+                      
Sbjct: 125 QRLEMVGPKVGADLRSKAVEALYYAVLLIAVYISGRFEQRWMASAVMAATLWGGMYLLSA 184

Query: 690 ------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                                     FALGAI  L+ D+  ++G  +L G EF+L  +AA
Sbjct: 185 IGLGREWLVFVSLLVTVALCWKLKLNFALGAIIALLHDVLISIGLLSLLGKEFDLNIIAA 244

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +LTLIGYS+ND ++VYDR+R+ ++       F  +I++SIN+TL R++ T     + ++ 
Sbjct: 245 LLTLIGYSLNDTIIVYDRIRETLRTNP-DDPFDVIINRSINQTLSRTILTGGTTLMVIVS 303

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +   GG VI  FA+ M FG+ +   SSIF+A+P+LL    
Sbjct: 304 LFFLGGGVIHDFALTMFFGVFIGTLSSIFVASPVLLAFGK 343


>gi|208435429|ref|YP_002267095.1| protein-export membrane protein [Helicobacter pylori G27]
 gi|208433358|gb|ACI28229.1| protein-export membrane protein [Helicobacter pylori G27]
          Length = 323

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 154/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FM    +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMHYSNYGVIVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  VKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVIALMHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNATQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|56551179|ref|YP_162018.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241760855|ref|ZP_04758944.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|260753175|ref|YP_003226068.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|56542753|gb|AAV88907.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241374474|gb|EER63935.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Zymomonas mobilis subsp. mobilis ATCC 10988]
 gi|258552538|gb|ACV75484.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Zymomonas mobilis subsp. mobilis NCIMB 11163]
          Length = 1047

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/521 (11%), Positives = 138/521 (26%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  +     +  + ++P+  P               + + V  
Sbjct: 8   RPVFAWVIGLIIMLLGALAIV-----KMPIAQYPNVAPP-------------QIEISVSY 49

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        I   S    Q  I L+FA     +    +V  
Sbjct: 50  PGASAETINNTVVRPILQQMHGIDNLEYISASSFASGQMTIDLTFAQGTDADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  D     +      +  +++             + +  +     D +   
Sbjct: 110 KLQLAQPRLPSDVVNQGITVNRSAKSFMMIMSFISTDGSMSYQDINDYVASNIADPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L +   T A +       N        G        
Sbjct: 170 SGVGDYTLFGF-EYAMRVWLDPAKLYKYNLTVADVQSAISTQNIQLSSGELGGLPAVQGI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     ++                +    +        +        +       
Sbjct: 229 RLDATIIGPTRLT-------------SPEEFKNILVKALPDGAQIKLGDIAKVELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T +      A L                      
Sbjct: 276 NFDVRYNNQPASGIAIKLAPGANQLQTEKLIRQRLADLEPFFPHGLKVEYPVDTKPFVTA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+ + +   +  L+   ++ + ++ T  +LS+LG ++   ++
Sbjct: 336 SIHEVIETLVEAIALVFLVMLIFLQNFRATLIPTIAVPVVLLGTFGVLSVLGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIA 473
             +VL +GL VD  I+V E +      +      +          A   I        + 
Sbjct: 396 LAMVLAVGLLVDDAIVVVENVERLMRDEKLPPKEAAKRSMDEISGALIGIVLVLSAVFLP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                   G   R F+IT+ +++ +S+  A+ +  A+   +
Sbjct: 456 MAAFSGSTGVIYRQFSITIVVAMGLSVLVAMIMTPALCATM 496



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 83/236 (35%), Gaps = 6/236 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + L  +       Q  +   +  +   + +        + +   +++      +    P
Sbjct: 259 QIKLGDIAKVELGAQSYNFDVRYNNQPASGIAIKLAPGANQLQTEKLIRQRLADLEPFFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                   +         I + I  ++ +   + + + I  + +   L     + + +  
Sbjct: 319 HGLKVEYPVDTKPFVTASIHEVIETLVEAIALVFLVMLIFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G  ++ G   N   + A++  +G  V+D +VV + +     +    +  ++   +S++
Sbjct: 379 TFGVLSVLGFSINTLTMLAMVLAVGLLVDDAIVVVENV--ERLMRDEKLPPKEAAKRSMD 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           E  G  +   +      LPMA + GS       F+I +   + ++   ++ +   +
Sbjct: 437 EISGALIGIVLVLSAVFLPMAAFSGSTGVIYRQFSITIVVAMGLSVLVAMIMTPAL 492



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 72/211 (34%), Gaps = 9/211 (4%)

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
               +N++G  +F +     PG S  +                                  
Sbjct: 816  QKVENYNGYNSFEIMGAPAPGHSSGEAIQAMTEIVHKLPAGVGHEWTGLSFEEQAAGSST 875

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            +    +  I+    +     +   W   L  I  L L +   +    + G+  ++     
Sbjct: 876  MSLYAISAIVVLFCLA---ALYESWAVPLSVILVLPLGVLGAVVATLMRGLSNDVYFQIG 932

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +LT +G +V + +++ +  +     +   +     + ++  E L   + TS+A  + V+P
Sbjct: 933  LLTTVGLTVKNAILIVEFAK---AFFDNGVPLLQSVVQAGRERLRPILMTSIAFVLGVIP 989

Query: 786  MAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            +++  G+      +    +  G+V A   +I
Sbjct: 990  LSIATGASSAARIAIGTAVVGGMVTATLLTI 1020


>gi|330876266|gb|EGH10415.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 1047

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/632 (11%), Positives = 172/632 (27%), Gaps = 52/632 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P+  P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   +   D      +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLMIYTLSYTGDSANKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAVRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T++        L           V       
Sbjct: 275 QDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPEGVEFSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ LLG ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGKFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            V        +   +  + L+   +S +    
Sbjct: 575 DVQLPPGATRARTDATAQLLETYMLSREATGA 606



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   + ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSVPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYLKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLF-IYDWRAKN 830
            A    + +     ++ +   R K 
Sbjct: 1009 ATLLGVVLVPIFFVWVLSVLRRKP 1032


>gi|188997667|ref|YP_001931918.1| protein-export membrane protein SecD [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932734|gb|ACD67364.1| protein-export membrane protein SecD [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 512

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 139/530 (26%), Positives = 255/530 (48%), Gaps = 45/530 (8%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           ++   +  +G +  +                   +  LGLD++GG  + L+VD D  +N 
Sbjct: 9   LIIVFLLLVGSIYLMMT----------------KQPKLGLDIQGGVSITLKVDIDKVIND 52

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
                  ++    K+ GI + + +     +TL   D    +   + +             
Sbjct: 53  QYAHLGKDIEKKFKENGIELLNYKIENQSLTLVLLDPTKIDKAKEVLKKEF--------- 103

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                ++V   +  + +  +   ++++ +  ++Q++E +R RIDQ G   + I + G  R
Sbjct: 104 ---PQVVVEDKDGNLLVRFTDWELNRIKTQTMKQAVETLRNRIDQFGTLSANITQKGKDR 160

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           +L+++PG  D +R + ++G TA++   +V+ +   K  +         D  + L   +  
Sbjct: 161 VLVEIPGVIDLNRAKSIIGKTAQLELKEVVNSALSKEELLKDYPNGLPDDLEILEGQEEV 220

Query: 249 ISGIHLNGA----------------TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
           ++G  +                         +   P V+      GA  F E T   IGK
Sbjct: 221 VNGQPVKEWFLVKKTPVITGAMLKDARVSTDQAGNPAVNFELTSEGAEIFGEATSKMIGK 280

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            LA+VLDG+ + +  + ++  +   QI+G FT E A  LA +LRAG+LP  + I+EE  +
Sbjct: 281 RLAIVLDGK-VMSAPVIRSRITSSGQITGRFTTEEANDLAVVLRAGALPAPVEIIEETVI 339

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG +SI K   A +   VL+ LFMI  Y   G +A  ++  N++L    + L   TL
Sbjct: 340 GPTLGKESIDKTLTAGIVSFVLVGLFMIFRYVVSGFIAVVALLFNLMLLWVTMLLFDITL 399

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP IAGI+L IG+ VD N+++ ERI+EE +  +++  +++ GF R ++ +FDS+IT +I
Sbjct: 400 TLPGIAGIILNIGMGVDGNVVIFERIKEELKNGKTLRVAIEEGFKRGFNAVFDSHITVII 459

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           A + L  FG   ++GFA T+ +   I++FTA+ + + ++  ++  KK   
Sbjct: 460 AALALLEFGNAPLKGFAATLSIGTFINLFTAVFLTKMLLDLVLGGKKYFK 509



 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 79/174 (45%), Gaps = 4/174 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
            ++GP + +E I K +   I+S + + +++  R+       A+  L+ ++        LF
Sbjct: 337 TVIGPTLGKESIDKTLTAGIVSFVLVGLFMIFRY-VVSGFIAVVALLFNLMLLWVTMLLF 395

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I   L  +A ++  IG  V+  VV+++R+++ +K      + R  I++           
Sbjct: 396 DITLTLPGIAGIILNIGMGVDGNVVIFERIKEELK---NGKTLRVAIEEGFKRGFNAVFD 452

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + +   I+ L +  +G + +  FA  ++ G  +   +++F+   +L  +   + 
Sbjct: 453 SHITVIIAALALLEFGNAPLKGFAATLSIGTFINLFTAVFLTKMLLDLVLGGKK 506


>gi|260175027|ref|ZP_05761439.1| putative cation efflux pump [Bacteroides sp. D2]
 gi|315923258|ref|ZP_07919498.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697133|gb|EFS33968.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1051

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 176/683 (25%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSIAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSQDSVYNSLYLTNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-S 236
                          +    DP  +R    +  ++       N        G    +D +
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPQQVYQSIQSQNVEVSAGYIGQPIGQDNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  +                 +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRL-------------KSPEQFGNIIIRREQDGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAESFPSGVAYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I T A+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T+++    G   + FA+T+  S ++S F ++++  A+    +   K  +  I       
Sbjct: 458 PTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSNFFIYKGFNKA 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R          L  I  +  +         +  G     V   
Sbjct: 518 YDKTQGVYDKIVKWLLQRPGMALASYGALTVIALLLFMHWPSTFIPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  E +     S+                 G+         ++K       
Sbjct: 578 PAASLERTQAVGEKINGILDSYPEVKNYIGISGFSIMGGGEQSNSATYFVVLKNWSERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+  
Sbjct: 638 KEHTAAAIVNRFNGEAYMTIQAA 660



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/542 (9%), Positives = 149/542 (27%), Gaps = 45/542 (8%)

Query: 329  GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                +         K     +      +       G      G + ++  ++ ++     
Sbjct: 502  KSKPSNFFIYKGFNKAYDKTQGVYDKIVKWLLQRPGMALASYGALTVIALLLFMHWPSTF 561

Query: 389  VADFSIFLNVILTL------------------ALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            + D      + +                     +L           I+G  +  G    +
Sbjct: 562  IPDEDDGYFIAVVQLPPAASLERTQAVGEKINGILDSYPEVKNYIGISGFSIMGGGEQSN 621

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +      ++  + +      +  +                + A V     G GA  G  +
Sbjct: 622  SATYFVVLKNWSERKGKEHTAAAIVNRFNGEAYMTIQAAEVFAMVPPAIPGLGASGGLQL 681

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +     +        + A++        + S+     +        I    ++     +
Sbjct: 682  QLEDRRNLGPTEMQQAINALLASYHSKPTLASVSSQYQANVPQYFLNIDRDKVQFMGIAL 741

Query: 551  GISILFSICSICLLFTHGL-----NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
                      +   + +        Y +  +   Q   + +  + LSV  S  E +    
Sbjct: 742  NDVFSTLGYYMGAAYVNDFVEFGRIYQVKIEARDQAQRVIDDVLKLSVPNSAGEMVPFSS 801

Query: 606  ISFQNFDGEKNFLVRLQ-----------YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +       ++ + R                  +    + +E + K+           + 
Sbjct: 802  FTKVEEQLGQDQINRYNMYSTASLTCNVAPGSSTGQAIQEVEALFKEQLGDEFGYEWTSV 861

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +         I+ +I++    L+       W   + A+  L + +   +    + 
Sbjct: 862  AYQETQAGNTTTIVLIMALIVAF---LVLAAQYESWTSPVAAVIGLPVALLGAMIGCLIM 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+  S  + +++ +  R          S R+   ++ +  L   + 
Sbjct: 919  GTPVSIYTQIGIILLVALSAKNGILIVEFARDFRAE---GNSIREAAFEAGHVRLRPILM 975

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA-SSSIFIAAPILLFIYDWRAKN 830
            TS A  + V+P+      G     +    + FG+ +    ++I+I      F+   + + 
Sbjct: 976  TSFAFVLGVMPLLFATGAGAQSRIALGAAVVFGMAMNTLLATIYI-PNFYEFMQKLQERF 1034

Query: 831  AR 832
            ++
Sbjct: 1035 SK 1036



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S  N        +  Q           V   +++           
Sbjct: 267 DIARIDLGSASYSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAESFPSGVAY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  T    
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSN 507


>gi|71280234|ref|YP_268279.1| hydrophobe/amphiphile efflux-1 family protein [Colwellia
           psychrerythraea 34H]
 gi|71145974|gb|AAZ26447.1| hydrophobe/amphiphile efflux-1 family protein [Colwellia
           psychrerythraea 34H]
          Length = 1037

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/610 (11%), Positives = 179/610 (29%), Gaps = 38/610 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+      +    ++ +P   P                V     
Sbjct: 9   RPKFAFVISIVITLAGLIA-----MSVLPVNMYPEITPPQVQ---------ISAVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    +E  + ++       S     +  IT+ F      +     V   +  
Sbjct: 55  AQIVEESVIRPIEEQINGVEDMMYIESSASNNGSAVITVFFKVGTDGDIAQVNVQNRVAL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  +  +    +    ++      +Q   + +  S        + +G  +   
Sbjct: 115 ATSSLPSEVTRQGVDVKKKSSSMLLGINLFSEQEGINQLFLSNYATNYLTEPLGRIKGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   +    +P R+  L  T  ++       N        G      +   +Y
Sbjct: 175 SAEVMGEMTYSMRAWLNPERMSSLSITVTEVQQALQEQNMIVAAGKLGASPTLPNQQFEY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  +                 +    I   +             +           
Sbjct: 235 SIQAKGRL-------------QTPEEFGQTIIRAQRNGNFIRLNDIARLELGAEDYSTQA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +       +            A L          ++          S   
Sbjct: 282 RLNGKETAFLVIYQLPDANATEVASLVKAEMAELSQRFPDGLKYVIPYDTTKFIDRSIEE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  ++   +I +++I T A + L+G ++   ++ G+V
Sbjct: 342 VVVTLFQAIVLVILVVFLFLQNWRATIIPTLAIPVSLIGTFAFMVLMGYSINTVTLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +   +  ++     +    I  + +  L   V + F 
Sbjct: 402 LAIGIVVDDAIIVIENVERILKEEQLPIKEAVTKAMDQVSGPIIATTLVLLAVFVPVAFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK------SIDINPLSRF 531
               G   + F++T+  ++LIS   A+++  A+   ++  +KMK        +       
Sbjct: 462 PGITGELYKQFSVTISFAVLISSLNALTLSPALCTVLLSAEKMKPITWLLPFERLITKAT 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +     R    G+ + ++F                 + +G + + +        
Sbjct: 522 GGYTKTVGFMLKRLTRVGLFVGLIFIGAGWLTTAVPTAFLPAEDQGYLFVDIQLPDAASS 581

Query: 592 SVVRSNLESL 601
           +  ++ L+ +
Sbjct: 582 NRTQAVLDKI 591



 Score = 89.0 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 98/251 (39%), Gaps = 6/251 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L+ +       +      +    E  FLV  Q    ++     +++    +++
Sbjct: 257 RNGNFIRLNDIARLELGAEDYSTQARLNGKETAFLVIYQLPDANATEVASLVKAEMAELS 316

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P            K     I + +V +  + + +++ +++  + W   +     + +
Sbjct: 317 QRFPDGLKYVIPYDTTKFIDRSIEEVVVTLFQAIVLVILVVFLFLQNWRATIIPTLAIPV 376

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T  F  L G   N   +  ++  IG  V+D ++V + +     L    +  ++ + 
Sbjct: 377 SLIGTFAFMVLMGYSINTVTLFGLVLAIGIVVDDAIIVIENV--ERILKEEQLPIKEAVT 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++++  G  + T++      +P+A      G +   F++ ++F +++++ +++ ++  +
Sbjct: 435 KAMDQVSGPIIATTLVLLAVFVPVAFMPGITGELYKQFSVTISFAVLISSLNALTLSPAL 494

Query: 820 LLFIYDWRAKN 830
              +       
Sbjct: 495 CTVLLSAEKMK 505



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/441 (10%), Positives = 131/441 (29%), Gaps = 28/441 (6%)

Query: 410  ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            A   + +++G  L  G   ++ + +   + ++  +  +    L     R    ++     
Sbjct: 600  AVEDIITVSGFSLLGGAGSNNGLAII--LLKDWEERTTPELGLKQIIPRLMGQLWTMPDA 657

Query: 470  ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             ++        G G   GF   +  S          ++  ++    +  ++  +     +
Sbjct: 658  QIMVFNPPPIPGLGNSSGFDFKLQDSEGRDPAELAQVMNGLIYEANQRPELSRVFSTYRA 717

Query: 530  RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                    +     +A+   +          +  L+ +  +        + +   +    
Sbjct: 718  NVPQYFLEVDRNKAKAQGVALSDIFATLQAQLGSLYINDFSQ-FGRTYRVTIQAESQYRA 776

Query: 590  DLSVVRSNLESLQIGDISFQNFDGE----------KNFLVRLQYQPGDSVAQTRVLEMVK 639
            + S +R      +  ++                   +F +        + +         
Sbjct: 777  EPSDLRYYFVRNKDDEMVPLTTLASVKPILGPTTISHFNLYRSASITGNASPGYSSGQSI 836

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGA 696
              + E+              +  +EL    +  ++     + +Y+++      W      
Sbjct: 837  DVMEELASTLPQGYIYEWSGQSKQELEAGNLAPILFGLAIIFVYLFLVAQYESWTIPFSV 896

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            I  + L +   +      G+  N+ A   ++ LIG S    +++ +   +      T   
Sbjct: 897  IAAVPLALFGAMLALYTVGMANNIYAQVGLVLLIGLSTKTAILIVEFAMEQRAAGET--- 953

Query: 757  FRDLIDKSINETLGR---SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
               +++ ++N    R    + T+ +  + VLP+      G     S  I +  G++ A  
Sbjct: 954  ---IMNAALNAAKMRFRAVLMTAFSFILGVLPLVFATGAGAGSRVSLGITVLAGMIAATL 1010

Query: 811  SSIFIAAPILLFIYDWRAKNA 831
                +     L I   R K  
Sbjct: 1011 FGTLLVPYFYLLIQRMREKIK 1031


>gi|162147080|ref|YP_001601541.1| acriflavine resistance protein B [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785657|emb|CAP55228.1| putative acriflavine resistance protein B [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1053

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/569 (10%), Positives = 151/569 (26%), Gaps = 41/569 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G +        +  + ++PS  P               + + V  
Sbjct: 8   RPVFAWVIGLVIMLVGAVAVF-----RLPIAQYPSIAPP-------------QIAITVTY 49

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S    Q +I L+FA     +    +V  
Sbjct: 50  PGASAETVNNTVVRPILQQMYGLDHLEYVSAQSYASGQMEIDLTFAQGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  +     L  T   +  +++             + +  +     D +   
Sbjct: 110 KLQLAQPRLPTEVTAQGLTVTKAVKNFMLVLAFISTDGSMSGFDIADYVASNVSDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +   T + +       N        G    R   
Sbjct: 170 SGVGDHTLFGA-EYAMRIWLDPGKLYKYGLTISDVQAAIQDQNIQVSSGEIGGLPARQGA 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     ++                +    +     G  +        +       
Sbjct: 229 RLDATIVGPTRLT-------------SPQEFGNILLRVAQGGSQVRIRDVARVELGPQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L+    P    +         + 
Sbjct: 276 NISSFYNNKPTVGMALKLAPGANQLTTETAVRAQVDELQKFFPPGLKVVYPLDTEPFIVL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV +V+ + +   +  L+   ++ + ++ T  +L+ LG ++   ++
Sbjct: 336 SIKEVVITLMEAIGLVFLVMLVFLQNFRATLIPTIAVPVVLLGTFGILAALGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIA 473
             +VL +GL VD  I+V E +     +   S   +  +       A   I     +  + 
Sbjct: 396 LAMVLAVGLLVDDAIVVVENVERVMAEKNLSPKDAARVSMDEISGALVGIVLVLTSVFLP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
                   G   R F++T+  ++ +S+  A+ I  A+   +++    +            
Sbjct: 456 MAAFGGSTGVIYRQFSVTIVAAMWLSVLVAMIITPALCGTMLKPGTHEKTRGPAGWFNRT 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSIC 562
                       R+      +   +  + 
Sbjct: 516 FARANTGYQSGVRWMLKRAPLSLVLYVLV 544



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 86/240 (35%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V +  V       Q  +IS    +     +        + +     +     ++ 
Sbjct: 255 QGGSQVRIRDVARVELGPQSYNISSFYNNKPTVGMALKLAPGANQLTTETAVRAQVDELQ 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P        +         I++ ++ ++ +   + + + +  + +   L     + +
Sbjct: 315 KFFPPGLKVVYPLDTEPFIVLSIKEVVITLMEAIGLVFLVMLVFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T G  A  G   N   + A++  +G  V+D +VV + +     +   ++S +D   
Sbjct: 375 VLLGTFGILAALGFSINTLTMLAMVLAVGLLVDDAIVVVENV--ERVMAEKNLSPKDAAR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            S++E  G  V   +      LPMA +GGS       F++ +   + ++   ++ I   +
Sbjct: 433 VSMDEISGALVGIVLVLTSVFLPMAAFGGSTGVIYRQFSVTIVAAMWLSVLVAMIITPAL 492



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 78/210 (37%), Gaps = 12/210 (5%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A T + E + K    I    T  + E +    S      G +  +   + +L    +
Sbjct: 832  TGTAITAIQEALAKLPPGIGYEWTGLSYEQMASGSS-----TGPLYALAGTVILLCLAAL 886

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               W   L  +  + L +   LG     G+  ++     +LT +G +V + +++ +  + 
Sbjct: 887  YESWAIPLAVLLVIPLGVLGALGATLWRGLANDVYFQVGLLTTVGLAVKNAILIVEFAK- 945

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                + +     D + K+  E L   + TS+A    V P+A+    G     +    +  
Sbjct: 946  --AFFESGDDLLDSVVKAGRERLRPILMTSIAFVCGVFPLAIATGAGSGARVAIGTAVVG 1003

Query: 804  GIVVAASSSIFIAAPILLF-IYDWRAKNAR 832
            G++ A   +I+      +  +  +R K  +
Sbjct: 1004 GMLSATLLAIYFVPLFFVLVLRLFRVKRVK 1033


>gi|220925207|ref|YP_002500509.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylobacterium nodulans ORS 2060]
 gi|219949814|gb|ACL60206.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium nodulans ORS 2060]
          Length = 1062

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 79/583 (13%), Positives = 159/583 (27%), Gaps = 40/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +   +I  IG +           + ++P  +P               +V+    
Sbjct: 10  RPIFASVTSIVILIIGYVA-----YISLPVSQYPEIVPPT-------------VVVRASY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +       +   +                 N ++T++FA     +     V  
Sbjct: 52  PGANAETVAATIATPIEQEINGVDNMLYMSSLSTNDGNMQLTVTFALGTNLDIANVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L  D +   +         +++               +  I  +  DQ+   
Sbjct: 112 RLSVATPRLPPDVRNLGVTVRKSSPDLMLVVHLLSPDNTYDQNYIANYIYLRIRDQLLRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP +L     +T  +       N        G     +  
Sbjct: 172 NGVGDITVFGGSEYALRLWLDPDKLAAYQLSTTDVIAALQEQNVQVASGALGAPPSPNEQ 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q +V+ +                 +       +       R         +       
Sbjct: 232 AFQLVVQTQGR--------------FQDPNEFRKVIVKASEGRLVRISDIARVDMGQKDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +     E+   L   L     P     +          
Sbjct: 278 VTQSFLNGQPAIGIGVFQRPGTNALEAAESVQSLMRELAKDFPPGLEYKIAYNPTEFIAE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  LV   +I ++++ T A+++ LG +L   ++
Sbjct: 338 SVHEVYKTLGEAVILVVVVIIVFLQSWRTALVPIIAIPVSLVGTFAVMAALGFSLNNLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E +        S   +          A   I        I T
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERNIADGLSPGEAAHKTMDEVGGAVVAIALVLSAVFIPT 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   R FA+T+  S +ISMF ++++  A+   +++           L+R    
Sbjct: 458 AFIPGISGQFYRQFALTIAASTIISMFNSLTLSPALCKLLLQPHHAYERPRFFLARLGTW 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
                 +   A       ++ F       L      YG    G
Sbjct: 518 AARTFNRGFDATATAYAGTVRFLTGRTVPLLVMLALYGGVIAG 560



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 5/139 (3%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  +   +        L   + N+     ++ LIG +  + +++ +     +
Sbjct: 903  SWALPLAILLVVPTGVLAAFAGVQLRAQDNNILTQIGLIVLIGLAAKNAILIVEFAH-QI 961

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +           + ++    L   + T+ A  + V+P+A+    G  +  +    + FG+
Sbjct: 962  EESERRGPVAAAV-EACRLRLRPILMTAFAFILGVVPLAIASGPGAEMRQALGTAVLFGM 1020

Query: 806  VVAASSSIFIAAPILLFIY 824
            + A    +F+     + I 
Sbjct: 1021 LGATIFGLFLTPVFYVVIR 1039



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 16/143 (11%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  AL  I  + + +  T    A  G   N   +  ++  IG  V+D +VV + + +N+
Sbjct: 363 SWRTALVPIIAIPVSLVGTFAVMAALGFSLNNLTLFGLVLAIGIVVDDAIVVVENVERNI 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSM--------AAFISVLPMAVWGGSVIGSFAIP 800
                 +S  +   K+++E  G  V  ++         AFI  +      G     FA+ 
Sbjct: 423 AD---GLSPGEAAHKTMDEVGGAVVAIALVLSAVFIPTAFIPGIS-----GQFYRQFALT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFI 823
           +A   +++  +S+ ++  +   +
Sbjct: 475 IAASTIISMFNSLTLSPALCKLL 497


>gi|325925403|ref|ZP_08186804.1| protein-export membrane protein SecD [Xanthomonas perforans 91-118]
 gi|325544198|gb|EGD15580.1| protein-export membrane protein SecD [Xanthomonas perforans 91-118]
          Length = 491

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 136/498 (27%), Positives = 241/498 (48%), Gaps = 36/498 (7%)

Query: 49  DLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRF 107
           DL GG H  ++VD+   +   L  +++++R+ L+   I   S+ R+  N I ++  +   
Sbjct: 2   DLVGGVHFAMQVDQKAALEKRLDGFAEDIRTTLRDARIPYRSVERRADNSIQVNLGEGAN 61

Query: 108 KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            +     +               +  L    + + I++ + +  + Q+ S AIEQ++  +
Sbjct: 62  ADAARVTLAK------------AQPTLTYDVSGQNIAVKVPEAELKQIASGAIEQNLTTL 109

Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
           R R++ +G+SE TIQR G  RI+++LPG QD +  ++L+G TA + F  V+  N+     
Sbjct: 110 RNRVNALGVSEPTIQRQGEDRIVVELPGLQDTAEAKRLIGATASLEFRAVVDGNADDAVR 169

Query: 228 FGVRFLRD------SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281
            G                  L+  +  ++G  +  A+ + D      V     +  G R 
Sbjct: 170 SGNIPPEAKVYRLRDSNAPVLLNKRALVTGDQMVSASVSTDQNGMPAVAVTLNNVAGQRM 229

Query: 282 FFEV-----------------TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
           F                    T   +       +  +         A   GK   +    
Sbjct: 230 FDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTTGLE 289

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
              A  LA +L++GSL   ++ VEE  +G  LG++++ +G  A+V   +  ++F  + Y 
Sbjct: 290 KTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTIYYR 349

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
            +G +   ++  N+++ +A++SL GAT+TLP  AG+ L +GL+VD+N+L+NERIREE R 
Sbjct: 350 VFGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRL 409

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
                 ++  G+ +A  TI D+N+T LI  V L+ FG G ++GFA+TM + I  SMFTAI
Sbjct: 410 GVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIFASMFTAI 469

Query: 505 SIVRAMMIFIIRYKKMKS 522
           ++ RA+ + I   +K   
Sbjct: 470 TVSRALAVLIYGSRKKLK 487



 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 96/267 (35%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +        G  + V+    +    +    E   +              +    +Q  
Sbjct: 227 QRMFDYTSANVGKLMSVVYIERIPTVTMVDGKEVRSVRVKEEALSPTRIAGVFGKNFQTT 286

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         K   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 287 GLEKTEAENLAKLLKSGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVYSFLFTLVFFTI 346

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F       L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 347 YYRV-FGAITSVALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 405

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++L    +  +  I     +  G  +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 406 ELRL---GVPAKSAIAAGYEKAGGTILDANLTGLIVAVALYAFGTGPLKGFALTMMIGIF 462

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I ++  + + IY  R K   +
Sbjct: 463 ASMFTAITVSRALAVLIYGSRKKLKSV 489


>gi|317010235|gb|ADU80815.1| preprotein translocase subunit SecF [Helicobacter pylori India7]
          Length = 323

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 90/294 (30%), Positives = 156/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKKVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KG++ +I++ +A+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGVLSLILALMAIMVYVSFRYEWRFALASVIALVHDVVLVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    I+++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAINEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|127512096|ref|YP_001093293.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           loihica PV-4]
 gi|126637391|gb|ABO23034.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella loihica PV-4]
          Length = 1040

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/686 (10%), Positives = 181/686 (26%), Gaps = 40/686 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ +++  +GL+       P   +  FP   P          +           
Sbjct: 9   RPKFAFVISTVLTLVGLISI-----PILSVAEFPEIAPP---------QVSVSTSYSGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++             +  + ++F      +    KV   +Q 
Sbjct: 55  ADIVKDTIAQPIEAEVNGVEGMLYMQSKSANDGSYSLNVTFDVGTDADMAQVKVQNRVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + K+  +    +    +++           ++  +        D +       
Sbjct: 115 AMPRLPEEVKRQGVKVEKQSPNILMVVNLVSPNETFDSLFITNYAGLNVKDALARQNGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    DP+++     T + +       N        G   +      QY
Sbjct: 175 KVQVIGALDYAIRIWLDPNQMASFGVTASDVIAALREQNIQVAAGRIGAAPVDPQQQFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  +                 +    +        +        +           
Sbjct: 235 TLQTKGRL-------------KDPEEFGRVMIRANPDGSKVIVSDVARVELGSQTYDAQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +        L +         V          S + 
Sbjct: 282 KLNNKPSAIIAIYQAPDANALEVAKAIKAEMDTLASRFPDDLEYKVLYDTTEFVETSITE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+ V+++ +   +  LV   +I +++I T A L   G ++   S+  ++
Sbjct: 342 VVQTLFISVALVVFVVYIFLQDARSTLVPGIAIPVSLIGTFAFLLAFGMSINTVSLFALI 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +           +  + +  L         
Sbjct: 402 LAIGIVVDDAIVVVENVTRLMEDEGLSPTEATSKAMKEVTGPVIATTLVLLAVFAPTAVM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     F++T+ +S+LIS   A+++  A+   +++  K  +   + L   +     
Sbjct: 462 PGITGQMYAQFSVTICISVLISSVNALTLSPALCASLLKPPKKHTHGFHHLFNTYFERFT 521

Query: 538 IAIQF------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                       +    GV  + L  +              ++ K    + +       L
Sbjct: 522 GGYMKLVSSLVRKLVLVGVAYACLIGVTGGIAKVLPSGFVPMEDKKAFMVDIQLPDGASL 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +     + +L          +   +           S     ++  +        P    
Sbjct: 582 NRTEEVMRNLVKLTQEEPGVENVIHASGFSILTGSVSSNGGLMIVTLSTWEERDSPDMVE 641

Query: 652 QNTEIVGPKISRELIRKGIVGVIISA 677
                     ++      +  +  S 
Sbjct: 642 AAIVAKLQ--AKYAANPSVKAMAFSL 665



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 78/253 (30%), Gaps = 16/253 (6%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +   V LS +      L    ++  N                   A   +    ++ +  
Sbjct: 791  SGEMVPLSTLVKVTPILGPDVMNAYNMFSSTTINGFPAPGFSSGDAIAAMERAAQETLPA 850

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLI 701
                           +  +E+    +  +I +   +  Y+++      W      +  + 
Sbjct: 851  GYKF-------EWTGQTYQEIKAGNLAPLIFALALVFTYLFLVAQYESWSIPFAVMLAVP 903

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I        L G E NL A   ++ LIG +  + +++ +  +   +L     S  D  
Sbjct: 904  IAILGAFLNILLVGSELNLYAQIGLVLLIGLACKNAILIVEFAK---QLREEGKSILDAA 960

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            + +        + T+ +  + VLP+ +    G     +    +  G++ A      +   
Sbjct: 961  ETAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGSRRALGYSVFGGMMAATLVGTLLVPV 1020

Query: 819  ILLFIYDWRAKNA 831
              + +   R +  
Sbjct: 1021 FYVIMQKLRERMK 1033



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 91/248 (36%), Gaps = 6/248 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +S V       Q  D   +  +     +   Q    +++   + ++     +    
Sbjct: 260 SKVIVSDVARVELGSQTYDAQGKLNNKPSAIIAIYQAPDANALEVAKAIKAEMDTLASRF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P            +     I + +  + IS   ++  ++I        L     + + + 
Sbjct: 320 PDDLEYKVLYDTTEFVETSITEVVQTLFISVALVVFVVYIFLQDARSTLVPGIAIPVSLI 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F   FG+  N  ++ A++  IG  V+D +VV + +     +    +S  +   K++
Sbjct: 380 GTFAFLLAFGMSINTVSLFALILAIGIVVDDAIVVVENV--TRLMEDEGLSPTEATSKAM 437

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  + T++       P AV     G +   F++ +   +++++ +++ ++  +   
Sbjct: 438 KEVTGPVIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICISVLISSVNALTLSPALCAS 497

Query: 823 IYDWRAKN 830
           +     K+
Sbjct: 498 LLKPPKKH 505


>gi|213969909|ref|ZP_03398042.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato T1]
 gi|301382184|ref|ZP_07230602.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|213925234|gb|EEB58796.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato T1]
          Length = 1047

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 72/632 (11%), Positives = 172/632 (27%), Gaps = 52/632 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P+  P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   +   D      +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLMIFTLSYTGDSANKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAVRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T++        L           V       
Sbjct: 275 QDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPEGVEFSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ LLG ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGKFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            V        +   +  + L+   +S +    
Sbjct: 575 DVQLPPGATRARTDATAQLLENYMLSREATGA 606



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   + ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSVPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLF-IYDWRAKN 830
            A    + +     ++ +   R K 
Sbjct: 1009 ATLLGVVLVPIFFVWVLSVLRRKP 1032


>gi|217967984|ref|YP_002353490.1| protein-export membrane protein SecF [Dictyoglomus turgidum DSM
           6724]
 gi|217337083|gb|ACK42876.1| protein-export membrane protein SecF [Dictyoglomus turgidum DSM
           6724]
          Length = 290

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/291 (29%), Positives = 154/291 (52%), Gaps = 5/291 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           I     R R   + +S+LF I  +   FT GLNY IDF+ G  +    + P++ + + + 
Sbjct: 5   INFLGKRVRRVFMILSLLFVIIGMYFFFTKGLNYSIDFQSGSVIYYKLSSPLNSNQIANL 64

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            +  +          G     V ++ +  +     R+   V+K I         +    +
Sbjct: 65  RDIARSFYSKSTIQTGSNGKEVWIRTKFLEENELKRLTSEVEKVI----VKYEGREITTI 120

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
            P ISREL  K I+  +++ I ML+YI +RF++ FA+ AI      +  T+  FA+   E
Sbjct: 121 EPTISRELREKAILAAVLAIIVMLVYITVRFRFDFAISAIINEAFVLLATISIFAISQWE 180

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            + + +AA+LTL+GY++ND ++V+DR+R+N K Y     F  + ++SIN+TL R++YT +
Sbjct: 181 VSPSFIAAILTLLGYAINDNIIVFDRIRENSKKYPK-EDFTIIANRSINQTLARTLYTVI 239

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              +++ P+ +WGG V+  F + +  GI++   S+I+IA+ IL    + + 
Sbjct: 240 TTLLAITPLLIWGGVVLRPFILAIYLGIIIGTYSTIYIASAILCEWRELQK 290


>gi|95930203|ref|ZP_01312941.1| Hydrophobe/amphiphile efflux-1 HAE1 [Desulfuromonas acetoxidans DSM
           684]
 gi|95133666|gb|EAT15327.1| Hydrophobe/amphiphile efflux-1 HAE1 [Desulfuromonas acetoxidans DSM
           684]
          Length = 1503

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/540 (12%), Positives = 151/540 (27%), Gaps = 41/540 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++   G+L           + ++P   P               + +    
Sbjct: 9   RPRLAGVVSIVLMLAGILSVF-----ALPIAQYPQVTPP-------------QVNVRASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +   E +   S         ++T+SF      +    KV  
Sbjct: 51  PGASAEVLAATVASPIEDAVNGVENMIYMSSSSDNTGSYQLTISFEVGTDTDMAQVKVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  +   TE    +              +  S    +     +   
Sbjct: 111 RVAQAEPLLPSEVTQQGVTVETESSDMLGFMLLRSTDGSLDDLYLSDYASKIIKPALERI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +               D  RL  L  +   ++      N        G      S 
Sbjct: 171 AGVSRAQVWGAQYSM-RVWMDADRLAALNLSPEDVASAIRAQNLQASIGSLGATPGDGSS 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y ++ +  +                      +          +      + K     
Sbjct: 230 KLVYSLKTEGRL-------------NDPDAFADIVIRTAADGAVVYLKDVARVEKGADQY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L               +     +   T++        L+A        ++          
Sbjct: 277 LYNAKYNGDNCVAMGLNRTPGSNALDTMDAVRSELEHLKAQFPEGLELVLPYDATEFVRT 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  +   LV++V ++ +   +  L+   +I +++  T  +LS+LG ++ + ++
Sbjct: 337 SIWEIATTLGLTFFLVVLVCYVFLQNWRATLIPALTIPVSLCATFMVLSVLGYSINILTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V ER+ E   R+  S   +      +    +  + +  L   V 
Sbjct: 397 FGLVLAIGLVVDDAIVVVERVMELMTREGLSPKEATIKTMEQVSGAVIATTLVLLAIFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G   + F++ +  ++L S   A+++  A+   ++     K           L
Sbjct: 457 VGFMEGITGKIYQQFSVAISAAVLFSTVNALTLSPALCATMLSIVPPKEHGPLKWFNTTL 516



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 91/254 (35%), Gaps = 7/254 (2%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
              D    I +   A+  V      + +E      +    ++G+    + L   PG +  
Sbjct: 242 NDPDAFADIVIRTAADGAVVYLKDVARVEKGADQYLYNAKYNGDNCVAMGLNRTPGSNAL 301

Query: 631 Q--TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                V   ++    +      +         +   +        +   + +L+      
Sbjct: 302 DTMDAVRSELEHLKAQFPEGLELVLPYDATEFVRTSIWEIATTLGLTFFLVVLVCYVFLQ 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    T+ + +  T    ++ G   N+  +  ++  IG  V+D +VV +R+ + M
Sbjct: 362 NWRATLIPALTIPVSLCATFMVLSVLGYSINILTLFGLVLAIGLVVDDAIVVVERVMELM 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                 +S ++   K++ +  G  + T++      +P+       G +   F++ ++  +
Sbjct: 422 T--REGLSPKEATIKTMEQVSGAVIATTLVLLAIFVPVGFMEGITGKIYQQFSVAISAAV 479

Query: 806 VVAASSSIFIAAPI 819
           + +  +++ ++  +
Sbjct: 480 LFSTVNALTLSPAL 493



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 76/237 (32%), Gaps = 6/237 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +L ++             K     +      S +    +  V     + +P     +  
Sbjct: 796  RSLVTIDTMQAPRNIERYNKFTSASINAVAMPSTSSGDAMAKVAAVAQQNLPRGYTFDWS 855

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
             +  + +R      ++ ++      L  +     W   L  I +  + I   L       
Sbjct: 856  SLSYQEARSSGGTYVLLLMAVLFGYLFLVAQYESWIIPLPVIVSTAVAIFGALAGLIAVS 915

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +  ++ A   ++ L+G +  + +++ +  +         +S  +   +   +     + T
Sbjct: 916  LPLSIYAQLGIILLVGLASKNAILIVEFSK---TQREEGLSILEAASEGAGQRFRAVLMT 972

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +    + VLPM      G +   S    + FG+V A    I +   + +    WR K
Sbjct: 973  AFTFILGVLPMVFASGAGSASRRSIGTTVFFGMVAATLVGIVLVPALYVMFQTWREK 1029



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 79/703 (11%), Positives = 188/703 (26%), Gaps = 45/703 (6%)

Query: 7    LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLG-LDLRGGSHLVLEVDEDDF 65
              ++ + +  +G +         S     P       I  G L L  G+ L         
Sbjct: 532  RRLVVTALILLGAIGGSYFLFSHSSTTFLPD--EDQGIIFGMLQLPEGASL---GRTSRV 586

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK-VTLFLQGVNS 124
            ++  +    D     +              +   ++F     +         L +  +  
Sbjct: 587  LDEVVSPLKD--EEGVNFVMQITGFSMMGGSGENVAFFLVGLENWAKRDSADLTISAIQQ 644

Query: 125  KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
            KL                   ++       +    +            ++    ++    
Sbjct: 645  KLQGRVAAVPSAQINLFTPPAIMGLGVSGGMDIRLLS----TEEDDPQKLQAVLNSFLMQ 700

Query: 185  GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
             +    I +      S    L     ++        N     +FGV            V 
Sbjct: 701  LNMAPEIMMAFSTYSSNTPHLHLEVDRVKAAL---MNVDVNRLFGVLQNYFGSLYVNDVN 757

Query: 245  DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
               +++ + +       +       + +            +   +  +    +      T
Sbjct: 758  FAGQVNKVVIQADWPFRNNVDALEGIYVQSTTGAMVPLRSLVTIDTMQAPRNIERYNKFT 817

Query: 305  APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
            +  IN       +       +                  L+  E R+ G           
Sbjct: 818  SASINAVAMPSTSSGDAMAKVAAVAQQNLPRGYTFDWSSLSYQEARSSGGTY-------- 869

Query: 365  TCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               ++  ++   LF++  Y      L    S  + +   LA L  +   L++ +  GI+L
Sbjct: 870  -VLLLMAVLFGYLFLVAQYESWIIPLPVIVSTAVAIFGALAGLIAVSLPLSIYAQLGIIL 928

Query: 423  GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
             +GLA  + IL+ E  + +  +  S+  +   G  + +  +  +  T ++  + + F   
Sbjct: 929  LVGLASKNAILIVEFSKTQREEGLSILEAASEGAGQRFRAVLMTAFTFILGVLPMVFASG 988

Query: 481  -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPLSRFFLI 534
             G  + R    T+   ++ +    I +V A+ +    ++            + L+   L+
Sbjct: 989  AGSASRRSIGTTVFFGMVAATLVGIVLVPALYVMFQTWREKGHAFRLRHSRSHLTTLVLM 1048

Query: 535  PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD---- 590
                 +                 I           ++   F   +   ++     +    
Sbjct: 1049 ILPFIMNGCITVGPDYQRPDPVVIEGAFEQAVDVGDWWTQFNDPLLTELVQQALANNRDL 1108

Query: 591  ------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                  +   R+ L   +       +  G  +     +    ++   T     V      
Sbjct: 1109 KTAVARVREARATLARSKAALWPTLDALGSVSRSKTSENASENAGESTLYDTGVNAAWEI 1168

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             V   T ++ E         LI  G V V ++A   L YI +R
Sbjct: 1169 DVFGGTRRSVEAANADWQSMLIDLGDVQVSVAAETALAYIALR 1211


>gi|302038762|ref|YP_003799084.1| RND efflux system, multidrug resistance protein [Candidatus
           Nitrospira defluvii]
 gi|300606826|emb|CBK43159.1| RND efflux system, multidrug resistance protein [Candidatus
           Nitrospira defluvii]
          Length = 1059

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/685 (10%), Positives = 182/685 (26%), Gaps = 46/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +GL+      L    + +FP   P               + +E D 
Sbjct: 9   RPIFASVLSIVIMVVGLVA-----LKALPVAQFPEITPPV-------------VQIEADY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  +    +  +   L           +        I L+F      +    +   
Sbjct: 51  PGANAEIVADSVARPIEVQLPGIDNLLYYDSTSTNDGHMSIKLTFEIGTDVDIAQVQAQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++    +L  +  +  +         + +   +        +  S   I + +D +   
Sbjct: 111 RVKLAEPQLPPEVVRQGISINKVSPDLLAVVALSSIDPTHDTVYLSNYAILRVLDNVKRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP R+ QL  T   +       N        G        
Sbjct: 171 RGVGNAVVFGSQNYSMRLILDPIRMAQLSLTPTDIVNVVREQNRDFPAGTIGREPALKGT 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  ++             +  +    I                 +       
Sbjct: 231 ELTIPVITQGRLT-------------EVKEFEELIVRAMPNGSMIRLKDVARVELGAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +       +   T++      A +           +          
Sbjct: 278 TLEGRWNGKPNVFLLTFLSPGANALETVKRVRAELAEVSKSFPTGVSYDIPYDTTRFIDV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV++V+++ +   +  L+   ++ ++++ T A +  LG ++   ++
Sbjct: 338 SIKEVVKTLAEAMVLVILVVYLFLQSWRATLIPGVAVPVSLVGTFAGMQALGFSINTLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E       +   S   +           +    +      V 
Sbjct: 398 FGMVLAIGIVVDDAIVVVENCERHMTQGGLSAKQAAKRAMEEVTGPVVAIVLVLCAVFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FAIT+ ++++IS F A+++  A+   +++  + +      L   F 
Sbjct: 458 VGFLGGITGELYKQFAITISIAVIISGFVALTLSPALCALVLKPGQERHHGFFGLFNRFF 517

Query: 534 IPDCIAIQF------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
               +           R        ++L     +            + +G     V    
Sbjct: 518 SWMQLRYISTVGLALTRRVLSVAVFAVLLIGVFMLFRVIPSSFLPEEDQGYFITIVQLPD 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                   + L  ++   ++            +             +   +K       P
Sbjct: 578 GASKQRTDAVLSKIESYFLASPAIHSTDALSGQNFVFNTRGPNAATMFVPLKHWDERTAP 637

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
              +++          ++    I+ 
Sbjct: 638 QHHVKSIIGAAYGEFAKIPEALILA 662



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 75/207 (36%), Gaps = 7/207 (3%)

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +  +VL+ +++   E++                R +  + +       + + + +  +++
Sbjct: 835  SSGQVLDALEQVAKEVLVPRGYGIDWSGISYQERMVGSQSLYAFAFGLLMVFLVLAAQYE 894

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      I  + + +   L      G+  ++     ++TLIG S  + +++ +      
Sbjct: 895  SWVVPFAVILAVPIGLFGALSAVWFKGMTNDIYFQIGLVTLIGLSAKNAILIVEFAN--- 951

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            K +       +   ++        V TSMA  + V+P+ +    G +   S    +  G+
Sbjct: 952  KRFEEGHPLLEATIEAAKLRFRPIVMTSMAFILGVVPLVIATGAGAASRNSIGTGVFGGM 1011

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A   +IF      + I     +  +
Sbjct: 1012 LAATFLAIFFVPLFFVLIRSLSRRLKK 1038



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     + L  V       Q   +  +       FL+       +++   + +     ++
Sbjct: 256 MPNGSMIRLKDVARVELGAQSYTLEGRWNGKPNVFLLTFLSPGANALETVKRVRAELAEV 315

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
           ++  P     +      +     I++ +  +  + + +++ +++    W   L     + 
Sbjct: 316 SKSFPTGVSYDIPYDTTRFIDVSIKEVVKTLAEAMVLVILVVYLFLQSWRATLIPGVAVP 375

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T       G   N   +  ++  IG  V+D +VV +       +    +S +   
Sbjct: 376 VSLVGTFAGMQALGFSINTLTLFGMVLAIGIVVDDAIVVVENC--ERHMTQGGLSAKQAA 433

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            +++ E  G  V   +      +P+   G   G +   FAI ++  ++++   ++ ++  
Sbjct: 434 KRAMEEVTGPVVAIVLVLCAVFVPVGFLGGITGELYKQFAITISIAVIISGFVALTLSPA 493

Query: 819 I 819
           +
Sbjct: 494 L 494


>gi|194364699|ref|YP_002027309.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Stenotrophomonas maltophilia R551-3]
 gi|194347503|gb|ACF50626.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Stenotrophomonas maltophilia R551-3]
          Length = 1033

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/663 (11%), Positives = 183/663 (27%), Gaps = 49/663 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G +        Q  ++++P   P               + +  + 
Sbjct: 9   RPVFAWVLAICIMAFGTIAV-----TQLPVEQYPDIAPP-------------QVNITANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +K           S    Q +IT++F  S   +    +V  
Sbjct: 51  TGASAQTVEDSVTQVIEQQIKGIDHLLYFSSTSSSSGQARITVTFDQSANPDIAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  + ++  +     +  S+++            ++ S  ++    D I   
Sbjct: 111 SVNQAINRLPQEVQQQGVTVAKSQGDSLMVVSLYDTSRRMERVDVSDFLVSNVQDPISRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +LR      + +       N        G      + 
Sbjct: 171 PGVGEINVFGS-AYAMRVWLDPHKLRAYDLMPSDVRAAIQAQNTQVTAGELGAMPSSPTQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I                 +       
Sbjct: 230 SLNATVTAQSRL-------------QTPEQFRAIILRTLPNGAAVLLGDVARVEIGAENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +  +  +   T +        LR    P         +      
Sbjct: 277 QTSSYLNGYPAAGFSVTLASGANALATADAVRAEIERLRPTFPPGLQVAYPRDSTPFVRV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + ++ T  +L++ G T+   ++
Sbjct: 337 SIEGVIHTLIEAIVLVVVVMFLFLQNLRATLIPAITVPVVLLGTFGVLAVAGFTINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     +       + +         +    +      + 
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIIHEEHLPPREATEKSMGEITGALIGITVVLGAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDI 525
           +  FGG      R F+IT+  ++ +S   A+++  A+   +         + +  ++ + 
Sbjct: 457 MALFGGSTGIIYRQFSITIASAMALSALVALTLTPALCATLLKPSSAQKPQGRFFRAFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +     R R W     +L                 ++ +G +      
Sbjct: 517 GVERSQLAYQGRLGGVVSRPRRWMAFYLLLVIAMVALYARMPTGFLPVEDQGQVTFQFST 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                ++   +  E +    +  +  + +  F+V  +   G      +    +K      
Sbjct: 577 PEGTPMARTEALGEQISRYFMEHEKQNLDVVFVVVGRNNAGTGQNAGQGFLALKPWDERT 636

Query: 646 VPL 648
              
Sbjct: 637 GDN 639



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 62/139 (44%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T G  A+ G   N   + A++  IG  V+D +VV + +     
Sbjct: 363 LRATLIPAITVPVVLLGTFGVLAVAGFTINTLTLFAMVLAIGLLVDDAIVVVENV--ERI 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           ++   +  R+  +KS+ E  G  +  ++      LPMA++GGS       F+I +A  + 
Sbjct: 421 IHEEHLPPREATEKSMGEITGALIGITVVLGAVFLPMALFGGSTGIIYRQFSITIASAMA 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A  ++ +   +   +  
Sbjct: 481 LSALVALTLTPALCATLLK 499



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 73/207 (35%), Gaps = 8/207 (3%)

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLI 682
            Q   S A+ R      +++  +V      + +  G     +L     + +   S   + +
Sbjct: 822  QIQGSAAEGRSSGEAMQRMQALVADQPGFDLQWSGLSYQEQLASNQTLWLYTASIAFIFL 881

Query: 683  YIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
             +   ++ W   +  +  + L +  T+      G   ++     +LT IG S  + +++ 
Sbjct: 882  CLAALYESWTVPVAVVLVIPLGVIGTVLATTAAGFVNDIYFQVGLLTTIGLSAKNAILIV 941

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFA 798
            +   +    Y    S  +   +     L   V TS+A    V+P+A+    G        
Sbjct: 942  E-FAE--ARYRAGSSAVEAALQGARLRLRPIVMTSLAFVAGVIPLALATGAGAVSRREIG 998

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYD 825
            + +  G++     ++ +     + +  
Sbjct: 999  MSVIGGMLSGTVLAVLLVPLFFVLVRR 1025


>gi|148265520|ref|YP_001232226.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Geobacter
           uraniireducens Rf4]
 gi|146399020|gb|ABQ27653.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Geobacter uraniireducens Rf4]
          Length = 1056

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/517 (11%), Positives = 141/517 (27%), Gaps = 33/517 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL           + ++P   P          +   + +     
Sbjct: 8   RPIFAWVIAIVIMLTGLLAI-----KALPVSQYPPIAPP---------QISINAMYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        I L+F           +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQKMNGIDNLLYMSSTSDSAGAVAINLTFKAGTDPNVAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +         ++++    +       + +  ++    D I   +   
Sbjct: 114 AVPLLPQVVQRQGIQVVKSTRNFLLIAGLVSEDGTLSRNDLTDYMVSNIQDIISRVQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +P +L     T   +       N        G            
Sbjct: 174 EVTVFGSQ-NAMRIWLNPDKLNNYRLTPNDVITALQAQNAQVSAGQLGGMPASQGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                             
Sbjct: 233 TITARSLL-------------QTPEQFDAIVLRTNPDGSTVKLKDVAESKVGTENYEMLA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +        A  +   T E      A L     P    +           S   
Sbjct: 280 RYKGKPVAAMALRLAAGANALDTAERVKAKMAELEKFCPPGVKVVYPYDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  L+   ++ + ++ T+ +L   G ++   ++  +V
Sbjct: 340 VLHTLIEAVFLVFIVMFLFLQNIRATLIPTIAVPVVLLGTMGVLFASGFSINTLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           + IGL VD  I+V E +      +      +      +  S  I  + +   +   + FF
Sbjct: 400 IVIGLLVDDAIVVVENVERIMSEEGLPPREATIKSMGQITSALIGIATVLTAVFVPMAFF 459

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G      R F+IT+  ++++S+  A+ +  A+   +
Sbjct: 460 PGSTGVIYRQFSITIVSAMILSVLVALILTPALCATL 496



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 83/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V  +    +  ++  +        +        +++     ++    ++ +  P 
Sbjct: 260 VKLKDVAESKVGTENYEMLARYKGKPVAAMALRLAAGANALDTAERVKAKMAELEKFCPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +I +   + I +++  +     L     + + +  T
Sbjct: 320 GVKVVYPYDTTPFVKISIEEVLHTLIEAVFLVFIVMFLFLQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G     G   N   + A++ +IG  V+D +VV + +     +    +  R+   KS+ +
Sbjct: 380 MGVLFASGFSINTLTMFALVIVIGLLVDDAIVVVENV--ERIMSEEGLPPREATIKSMGQ 437

Query: 768 TLGR--SVYTSMAAFISVLPMAVWGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                  + T + A    +        VI   F+I +   ++++   ++ +   +   + 
Sbjct: 438 ITSALIGIATVLTAVFVPMAFFPGSTGVIYRQFSITIVSAMILSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 70/218 (32%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              ++ Q  PG S  +                            K   +      + +++ 
Sbjct: 827  MEIQGQAAPGVSTGEAMAEMERMASKLPEGIGYEWTGLSYEEKKAGAQAPALYAISLLVV 886

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +A+     +   W      +  L L +   +   +L  +  ++     +LT IG S  +
Sbjct: 887  FLAVA---ALYESWTIPFVNLLMLPLGLVGAVTAVSLRMLPNDIYLQIGLLTTIGLSTKN 943

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++   ++  M+     +   +    ++   L   + TS+A F   LP+A+    G   
Sbjct: 944  AILIIQFIKDQMQQ---GLGLMEATLAAVKIRLRPVIMTSLAFFFGTLPLALTKGAGAGA 1000

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +    +  G++ A    +       + +    A+  
Sbjct: 1001 QNAIGTAVTGGLLSATFIDLIFIPFFFVLVSRLFARKR 1038


>gi|323498530|ref|ZP_08103523.1| preprotein translocase subunit SecD [Vibrio sinaloensis DSM 21326]
 gi|323316419|gb|EGA69437.1| preprotein translocase subunit SecD [Vibrio sinaloensis DSM 21326]
          Length = 613

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 155/512 (30%), Positives = 261/512 (50%), Gaps = 25/512 (4%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            F   S+  ++   M  + I LGLDLRGG   +L VD D           DE+R  L++E
Sbjct: 114 TFSYVSVAPQWLGDMGFSPIKLGLDLRGGVQFLLNVDIDKAFEEQRNTLVDEMRDMLRQE 173

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            I      Q+         D    ++ + +          +          V      ++
Sbjct: 174 RIRGVKFTQVG-------VDGFDVKSQSTEALTTASTYIKQNYPGWD----VKRHSDYLA 222

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +  +Q N  +  +  + Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS  + 
Sbjct: 223 VKPTQQNKTEFQTVTLTQNLKIMRDRIEELGITEAAVQRQGEHSIRIELPGVQDPSLAKN 282

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA ++FH+     + +G  +G   L+D+DG   ++  +  ++G H+  A A  D  
Sbjct: 283 VIGATATLAFHEAK--AASEGVGYGDIVLKDNDGRDVILAKRAVLTGEHIVNARAGVDKM 340

Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
               V        G            +    V  +              + +    Q+  
Sbjct: 341 GFSEVNIALDHAGGKIMSDFSGKHIGKPMATVYSEYTTNAKGETERSERVISVATIQSQL 400

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             + +I+G  T+E A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  GL 
Sbjct: 401 GSQFRITGAGTMEEAQNLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALALGLA 460

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432
           + + FM + Y + G VA+ ++ +N++  L L++LL  A LTLP IAG+VL +G+AVD+N+
Sbjct: 461 MTLTFMALWYRRLGWVANVALMINMVSLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 520

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+ ERI+++  + ++   S+D+GF  A STI D+NIT +I  VVL+  G G ++GFA+T+
Sbjct: 521 LIFERIKDKLAEGRTFAQSIDLGFGSALSTILDANITTMITAVVLYSIGNGPIQGFALTL 580

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GL +L SMF+ +   RA++  +      + + 
Sbjct: 581 GLGLLTSMFSGVFASRAIINLVWGRDSRRDVR 612



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 77/176 (43%), Gaps = 5/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +G  +  E I+ G   + +     L ++ + ++      A   L++++   LG  AL  
Sbjct: 438 TIGASLGAENIQNGFAALALGLAMTLTFMALWYR-RLGWVANVALMINMVSLLGLIALLP 496

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  +       +F   ID      L   + 
Sbjct: 497 GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLAE---GRTFAQSIDLGFGSALSTILD 553

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++   I+ + +   G   I  FA+ +  G++ +  S +F +  I+  ++   ++ 
Sbjct: 554 ANITTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFSGVFASRAIINLVWGRDSRR 609


>gi|209544141|ref|YP_002276370.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209531818|gb|ACI51755.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Gluconacetobacter diazotrophicus PAl 5]
          Length = 1053

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/569 (11%), Positives = 152/569 (26%), Gaps = 41/569 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G +        +  + ++PS  P               + + V  
Sbjct: 8   RPVFAWVIGLVIMLVGAVAVF-----RLPIAQYPSIAPP-------------QIAITVTY 49

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S    Q +I L+FA     +    +V  
Sbjct: 50  PGASAETVNNTVVRPILQQMYGLDHLEYVSAQSYASGQMEIDLTFAQGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  +     L  T   +  +++             + +  +     D +   
Sbjct: 110 KLQLAQPRLPTEVTAQGLTVTKAVKNFMLVLAFISTDGSMSGFDIADYVASNVSDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +   T + +       N        G    R   
Sbjct: 170 SGVGDHTLFGA-EYAMRIWLDPGKLYKYGLTISDVQAAIQDQNIQVSSGEIGGLPARQGA 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     ++                +    +     G  +        +       
Sbjct: 229 RLDATIVGPTRLT-------------SPQEFGNILLRVAQGGSQVRIRDVARVELGPQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L+    P    +         + 
Sbjct: 276 NISSFYNNKPTVGMALKLAPGANQLTTETAVRAQVDELQKFFPPGLKVVYPLDTEPFIVL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV +V+ + +   +  L+   ++ + ++ T  +L+ LG ++   ++
Sbjct: 336 SIKEVVITLMEAIGLVFLVMLVFLQNFRATLIPTIAVPVVLLGTFGILAALGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIA 473
             +VL +GL VD  I+V E +     +   S   +  +       A   I     +  + 
Sbjct: 396 LAMVLAVGLLVDDAIVVVENVERVMAEKNLSPKDAARVSMDEISGALVGIVLVLTSVFLP 455

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
                   G   R F++T+  ++ +S+  A+ I  A+   +++    +            
Sbjct: 456 MAAFGGSTGVIYRQFSVTIVAAMWLSVLVAMIITPALCGTMLKPGTHEKTRGPAGWFNRT 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSIC 562
                A      R+      +   +  + 
Sbjct: 516 FARANAGYQSGVRWMLKRAPLSLVLYVLV 544



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 86/240 (35%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V +  V       Q  +IS    +     +        + +     +     ++ 
Sbjct: 255 QGGSQVRIRDVARVELGPQSYNISSFYNNKPTVGMALKLAPGANQLTTETAVRAQVDELQ 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P        +         I++ ++ ++ +   + + + +  + +   L     + +
Sbjct: 315 KFFPPGLKVVYPLDTEPFIVLSIKEVVITLMEAIGLVFLVMLVFLQNFRATLIPTIAVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T G  A  G   N   + A++  +G  V+D +VV + +     +   ++S +D   
Sbjct: 375 VLLGTFGILAALGFSINTLTMLAMVLAVGLLVDDAIVVVENV--ERVMAEKNLSPKDAAR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            S++E  G  V   +      LPMA +GGS       F++ +   + ++   ++ I   +
Sbjct: 433 VSMDEISGALVGIVLVLTSVFLPMAAFGGSTGVIYRQFSVTIVAAMWLSVLVAMIITPAL 492



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 78/210 (37%), Gaps = 12/210 (5%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A T + E + K    I    T  + E +    S      G +  +   + +L    +
Sbjct: 832  TGTAITAIQEALAKLPPGIGYEWTGLSYEQMASGSS-----TGPLYALAGTVILLCLAAL 886

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               W   L  +  + L +   LG     G+  ++     +LT +G +V + +++ +  + 
Sbjct: 887  YESWAIPLAVLLVIPLGVLGALGATLWRGLANDVYFQVGLLTTVGLAVKNAILIVEFAK- 945

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                + +     D + K+  E L   + TS+A    V P+A+    G     +    +  
Sbjct: 946  --AFFESGDDLLDSVVKAGRERLRPILMTSIAFVCGVFPLAIATGAGSGARVAIGTAVVG 1003

Query: 804  GIVVAASSSIFIAAPILLF-IYDWRAKNAR 832
            G++ A   +I+      +  +  +R K  +
Sbjct: 1004 GMLSATLLAIYFVPLFFVLVLRLFRVKRVK 1033


>gi|160891319|ref|ZP_02072322.1| hypothetical protein BACUNI_03768 [Bacteroides uniformis ATCC 8492]
 gi|156859540|gb|EDO52971.1| hypothetical protein BACUNI_03768 [Bacteroides uniformis ATCC 8492]
          Length = 1010

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 87/687 (12%), Positives = 186/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLSTVLTLIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q  ++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGSSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPLDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E G R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLILKEDGNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +              ++              N      S   
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIANAVYDRMEKMKKDLPEDVHYNYGFDNTKFIRASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  +V
Sbjct: 333 VKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFIMYLAGFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK----KMKSIDINPLSRFFLI 534
              G   R F+I +  S++IS F A++    +   ++  +                   +
Sbjct: 453 GTTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREQQSWFYRKTEPFFEGMNRV 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSV 593
                  F++ R+  +  +I+  +    L  T       ++ +  I +  +    V    
Sbjct: 513 YSQSLAAFLKRRWIALPFTIVTILLIGVLWNTIPAEMAPLEDRSQISINTMGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S              G  N  + L+        Q  V E + K + +
Sbjct: 573 IRDYTEDINHLVDSIIPDAEAVTARVSSGSGNVRITLKDMKDRDYTQMEVAEKLSKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +   I++ + + + +  +F+ +   L  + T+ L I   L F     I  N+ +   ++ 
Sbjct: 846  MFAFILAIVLIYLILAAQFESFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIM 905

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +           I  +  + L   + TS +  + ++P+A 
Sbjct: 906  LIGLVAKNGILIVEFAN---QKQEAGEDKMRAIKDASLQRLRPILMTSASTILGLIPLAY 962

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G            +  G++++   +++I   I  ++   R+K  
Sbjct: 963  ATGEGCNQRIAMGTAVVGGMLISTLLTMYIVPAIYSYVSTNRSKLK 1008



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V + ++K   ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIANAVYDRMEKMKKDLPEDVHYNYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASIDEVKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFIMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ AV+  +G  V+D +V+ + +          +  ++   +   E     + 
Sbjct: 380 GFSINVLSMLAVVLAVGLVVDDAIVMTENI---YVRIEKGMPPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G+       F+I ++  +++++ +++     +   +   R + +
Sbjct: 437 TTITLVAVFFPIVFMDGTTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREQQS 496


>gi|307638224|gb|ADN80674.1| Protein-export membrane protein [Helicobacter pylori 908]
          Length = 323

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKRTRILSFMRYSNYGVIVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAL 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ IA+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALIAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNATQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|260777394|ref|ZP_05886288.1| protein-export membrane protein SecD [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607060|gb|EEX33334.1| protein-export membrane protein SecD [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 612

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 152/516 (29%), Positives = 260/516 (50%), Gaps = 34/516 (6%)

Query: 27  LPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKK 83
           +  S +   P  +     + I LGLDLRGG   +L VD D           DE+R  L++
Sbjct: 112 ISFSYVSVAPKWLSDMGFSPIKLGLDLRGGVQFLLNVDVDKAFEEQRNTIVDEMRDMLRQ 171

Query: 84  E---GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           E   G+    +          F           K   +++               +    
Sbjct: 172 EHIRGVKFAQVGVDG------FDLKSNSGEALTKSANYIRQ--------NYPGWDIKRHS 217

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
             +++  +  N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS
Sbjct: 218 DYLAVKPTVQNKSEFQTVTIKQNLKIMRDRIEELGITEALVQRQGEHSIRIELPGVQDPS 277

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           + + ++G TA ++FH+       +G  +G   L+D+DG   ++  +  ++G H+  A A 
Sbjct: 278 QAKNVIGATATLAFHEAKS--PSEGVSYGDIVLKDNDGRDVVLSKRPVLTGEHIVNARAG 335

Query: 261 FDPKTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
            D      V        G            +    V R+              + +    
Sbjct: 336 VDKMGFSEVNISLDHSGGKTMSDFSGKHIGKPMATVYREYTTNANGETERSEKVISVATI 395

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           Q+    + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+ 
Sbjct: 396 QSQLGSQFRITGAGSLDEAQNLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALA 455

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAV 428
            G+ + + FM + Y + G VA+ ++ +N+I  L L++LL  A LTLP IAG+VL +G+AV
Sbjct: 456 LGMAMTLTFMALWYRRLGWVANVALVVNMISLLGLIALLPGAVLTLPGIAGLVLTVGMAV 515

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D+N+L+ ERI+++  + ++   S+D+GF  A STI D+NIT +I  VVL+  G G ++GF
Sbjct: 516 DTNVLIFERIKDKLAEGRTFAQSIDLGFGSALSTILDANITTMITAVVLYSIGNGPIQGF 575

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           A+T+GL +L SMF+ +   RA++  +      + + 
Sbjct: 576 ALTLGLGLLTSMFSGVFASRAIINLVWGRDSRRDVR 611



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 76/176 (43%), Gaps = 5/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +G  +  E I  G   + +     L ++ + ++      A   L++++   LG  AL  
Sbjct: 437 TIGASLGAENIENGFAALALGMAMTLTFMALWYR-RLGWVANVALVVNMISLLGLIALLP 495

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  +       +F   ID      L   + 
Sbjct: 496 GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLAE---GRTFAQSIDLGFGSALSTILD 552

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++   I+ + +   G   I  FA+ +  G++ +  S +F +  I+  ++   ++ 
Sbjct: 553 ANITTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFSGVFASRAIINLVWGRDSRR 608


>gi|315257192|gb|EFU37160.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 85-1]
          Length = 497

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 51/465 (10%), Positives = 121/465 (26%), Gaps = 37/465 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +Q      +   +     +   S          ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
           + G+VL IGL VD  I+V E +     +++          + A  
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKINVANP 439



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/173 (10%), Positives = 56/173 (32%), Gaps = 3/173 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++ 
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEA 430


>gi|77920685|ref|YP_358500.1| cation/multidrug efflux pump [Pelobacter carbinolicus DSM 2380]
 gi|77546768|gb|ABA90330.1| cation/multidrug efflux pump [Pelobacter carbinolicus DSM 2380]
          Length = 1042

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/666 (12%), Positives = 192/666 (28%), Gaps = 43/666 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+ A         + ++P   P               + +    
Sbjct: 9   RPIFAAVISIIIVIAGLVAA-----RTLPVSQYPEIAPPT-------------VRVTTSY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   EG+   S     N    +T++F      +  A  V  
Sbjct: 51  PGANANVVAETVAQPIEEQVNGVEGMLYMSSTCTNNGEYTLTVTFEVGTDLDMAAVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  + K+N + T  +    ++++           +  S     +  D++   
Sbjct: 111 RVAIAEPSLPEEVKRNGISTKKQSTNILLIASLFSPDSRFDTLYLSNYASLRIKDELARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP RLR    TTA +       N        G        
Sbjct: 171 DGVGDVTIFGARDYSMRIWLDPDRLRARSLTTADVIDALQEQNVQVAAGQIGQDPAPAGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V     +                 +    I       R         +       
Sbjct: 231 SFQFTVNTLGRL-------------KDAGQFENIIVKAGKEGRLIRLRDIARVELGAKNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     E      A L           +          
Sbjct: 278 SSLSQLNGTPSVSIGIYQLPGANALEVAERVEAKIAQLSKTFPDGLEYKIPFNTTMFVDT 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T  I   LV + +++ +   +  ++   +I +++I T A+++ +G ++ + S+
Sbjct: 338 AIDEVVMTLLIAVLLVFLTIYVFLQDWRATVIPALTIPVSLIGTFAVMAGMGVSINMLSL 397

Query: 418 AGIVLGIGLAVDSNILVNER-IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            GIVL IG+ VD  I+V E   R  +    +   +           I  + +  L   + 
Sbjct: 398 FGIVLAIGVVVDDAIVVVENTARNIDDHGLTPREATIRAMQEVTGPIIATTLVLLAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSR 530
             F G   G   R FA+T+ ++ + S   A+++  A+   +    +        +   + 
Sbjct: 458 TAFLGGITGQLYRQFALTVAVATVFSSINALTLSPALCALLLRPTKTAHWGFFRLFNWTF 517

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    +     R   + + +  ++ ++       L  G           ++ +  D
Sbjct: 518 ERTSNLYARLLGGLVRRAVLTLVLFVALATMAFWGFVRLPTGFVPSEDQGYCFVSIQLPD 577

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +      ++  +      DG  +++  + +   D  A + +  +          +S 
Sbjct: 578 AASLERTGAVVEQVNQRLAAMDGIGDWVSIIGFSLIDGAASSNMATIWVVFDPWEKRMSA 637

Query: 651 IQNTEI 656
             + + 
Sbjct: 638 DLSQDA 643



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 85/239 (35%), Gaps = 10/239 (4%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +       +      Q        +   Q    +++     +E    ++++  P     
Sbjct: 266 DIARVELGAKNYSSLSQLNGTPSVSIGIYQLPGANALEVAERVEAKIAQLSKTFPDGLEY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                        I + ++ ++I+ + + + I++    W   +    T+ + +  T    
Sbjct: 326 KIPFNTTMFVDTAIDEVVMTLLIAVLLVFLTIYVFLQDWRATVIPALTIPVSLIGTFAVM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLIDKSINETL 769
           A  G+  N+ ++  ++  IG  V         + +N         ++ R+   +++ E  
Sbjct: 386 AGMGVSINMLSLFGIVLAIGVVV----DDAIVVVENTARNIDDHGLTPREATIRAMQEVT 441

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           G  + T++      +P A  G   G +   FA+ +A   V ++ +++ ++  +   +  
Sbjct: 442 GPIIATTLVLLAVFIPTAFLGGITGQLYRQFALTVAVATVFSSINALTLSPALCALLLR 500



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 66/192 (34%), Gaps = 7/192 (3%)

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
            V + +      +++                +G+   +++ + + + +  +++ W   L  
Sbjct: 839  VMESLAAAKLPASMGFEWTGMSYQESTTADQGLFIFLLAVVFVYLVLCAQYESWSSPLAI 898

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            I ++ L +  T     + G+E N+     ++ LI  S    +++ +  +           
Sbjct: 899  ILSVPLALLGTASAVMMRGMEVNVYTQIGIVLLIALSSKTSILIVEFAK---AKRDAGED 955

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
              D   ++        + T++   + V P+ V    G +   +    +  G++ A    I
Sbjct: 956  IADAALEAARLRFRPILMTALTFVLGVAPLVVATGAGAASRQALGTAVFGGMLSATFLLI 1015

Query: 814  FIAAPILLFIYD 825
                   + I  
Sbjct: 1016 LFVPVFYVVIQR 1027


>gi|170727904|ref|YP_001761930.1| protein-export membrane protein SecF [Shewanella woodyi ATCC 51908]
 gi|169813251|gb|ACA87835.1| protein-export membrane protein SecF [Shewanella woodyi ATCC 51908]
          Length = 314

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 77/291 (26%), Positives = 146/291 (50%), Gaps = 2/291 (0%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +            +  + R++   IS+   I S+ ++   G N+G+DF GG+   +  +
Sbjct: 4   NMMNGKSWNFSNMSRLTKWRYFTSFISLTLMILSVTIISVKGFNWGLDFTGGVVTEIRVD 63

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + +    +   L      ++S  +      +++R    P         L+ + + ++ + 
Sbjct: 64  KEISAKQIEVLLAKSSQQEVSVISAGELGRWVLRYSQTPTSGDVSANALD-ITEVLSPLK 122

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               + NT IVGP+I +EL  +G + ++++ + +L Y+  RF+W  A GA+  L  D+  
Sbjct: 123 SEVQVLNTSIVGPQIGQELAEQGGLALLVAMLCILGYLSFRFEWRLASGALFALFHDVIF 182

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L FF+L  +EFNLT +AAVL ++GYS+ND +++ DR+R+ + L    +   D+   ++ 
Sbjct: 183 VLAFFSLTQMEFNLTVLAAVLAILGYSLNDSIIIADRIRELLTLKPK-MPIADVCTSAVK 241

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            T  R++ TS    ++V  + V GG  + SF+I M  GI+    SSI +  
Sbjct: 242 ATFSRTMVTSGTTLMTVSALWVMGGGALESFSIAMFIGILTGTWSSISVGT 292


>gi|82778573|ref|YP_404922.1| N-terminal fragment of integral transmembrane protein involved with
           acridine resistance [Shigella dysenteriae Sd197]
 gi|309785594|ref|ZP_07680225.1| acriflavine resistance protein F [Shigella dysenteriae 1617]
 gi|81242721|gb|ABB63431.1| N-terminal fragment of integral transmembrane protein involved with
           acridine resistance [Shigella dysenteriae Sd197]
 gi|308926714|gb|EFP72190.1| acriflavine resistance protein F [Shigella dysenteriae 1617]
          Length = 569

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/522 (11%), Positives = 146/522 (27%), Gaps = 41/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++            ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGSSVEKSSSSYLMVAGFISDNPDTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +      A L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+    + + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIPVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + FFGG      R F+IT+  ++ +S+  A+ +  A+   +
Sbjct: 455 PMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATL 496



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIPVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|254000182|ref|YP_003052245.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylovorus sp. SIP3-4]
 gi|313202147|ref|YP_004040805.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylovorus sp. MP688]
 gi|253986861|gb|ACT51718.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylovorus sp. SIP3-4]
 gi|312441463|gb|ADQ85569.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylovorus sp. MP688]
          Length = 1069

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 82/696 (11%), Positives = 196/696 (28%), Gaps = 55/696 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+           +  +P  +P               ++++   
Sbjct: 10  RPIFAGVLSVLIFIGGLISMF-----NLPISEYPEVVPP-------------SVIVKAQF 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   EG+   + +   +    +T++F      +     V  
Sbjct: 52  PGANPQTIAETVAAPIEEQINGVEGMLYMASQATSDGLMTLTITFKLGTSPDLAQQLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + T        ++                   +    D++   
Sbjct: 112 RVNQALPRLPEEVQRLGVTTVKSSPDLTMVVHLLSPNGRYDMTYLRNYALLNVKDRLARI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q          +    DP ++ +   T   +       N      + G        
Sbjct: 172 EGVGQVQLFGAGDYSMRIWLDPRKVAERKLTANDVVTAIRQQNVDVAAGVIGASPSLPGT 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V  +  ++                +    +                 +    +  
Sbjct: 232 DYQISVNARGRLNTEE-------------EFENIVIRTSPDGVVTRLSDVARVELGASEY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L                +     E      A L+          +          
Sbjct: 279 ALRSLLDNKSAVAIPIFQAPGSNALQISENVRKTMAELQEDMPEGLEYHIVYDPTQFVRA 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I  GLV++V+ + +   +  ++   ++ ++VI T A++  LG ++   S+
Sbjct: 339 SIHAVTETLLIAVGLVVLVVIIFLQTWRASIIPLLAVPVSVIGTFAVMMGLGFSINTLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +           I    +T     V L
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIERGLSAKEATYRAMREVSGPIVAIALTLSAVFVPL 458

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFF 532
            F     G   + FA+T+ +S +IS F ++++  A+   +++    K           F 
Sbjct: 459 AFVSGLTGQFFKQFALTIAISTVISAFNSLTLSPALASLLLKRHDEKKDAFQRTIDRLFG 518

Query: 533 LIPDCIAIQFMR------------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
                    F R             R   V + +  ++    +L  H +  G       Q
Sbjct: 519 WFFVRFNRVFHRGSEKYGNGVTGVLRHKSVMLVLYGALIGSTMLLIHLVPTGFIPAQDKQ 578

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
             V   +  D + +    + ++          G ++ +                  +   
Sbjct: 579 YLVSFAQLPDAASLDRTEDVIRQMSEIALKHPGVESAVAFPGLSINGFTNSPNSGIVFAT 638

Query: 641 KITEIVPLSTIQNTEIVGPKISRE--LIRKGIVGVI 674
                      Q+   +  +++++   I+   + V 
Sbjct: 639 LKPFDERKGADQSGFAIAQQLNQQYASIQGAFIAVF 674



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/232 (9%), Positives = 72/232 (31%), Gaps = 11/232 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      D + +        +         +      +E +  +               
Sbjct: 813  KMTQSYGPDRAMRYNGFPSADVNGGAAPGYSTGEAQAAVERIAAETLPRGIGFEWTELTY 872

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                    L     V + +S + + + +  +++     L  +  + + +   +    L  
Sbjct: 873  QEKIAGNTL----FVILPLSILLVFLVLSAQYESLTLPLAVLLIVPMGLLSAIFGVWLTN 928

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + N+    +++ L+G +  + +++ +  R+                ++    L   + T
Sbjct: 929  GDNNIFTQVSLVVLVGLACKNAILIVEFARELELEGRK---IYAAAIEAARLRLRPILMT 985

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            S+A    V+P+ V    G  +  +  I +  G++      +F+     + I 
Sbjct: 986  SIAFIAGVVPLVVSTGAGSEMRHAMGIAVFAGMIGVTVFGLFLTPVFYVLIR 1037



 Score = 45.5 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 53/124 (42%), Gaps = 9/124 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  T       G   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---LAVPVSVIGTFAVMMGLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNI---E 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S ++   +++ E  G  V  ++      +P+A      G     FA+ +A   V++A
Sbjct: 425 RGLSAKEATYRAMREVSGPIVAIALTLSAVFVPLAFVSGLTGQFFKQFALTIAISTVISA 484

Query: 810 SSSI 813
            +S+
Sbjct: 485 FNSL 488


>gi|331010361|gb|EGH90417.1| AcrB/AcrD/AcrF family transporter [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 1047

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/693 (10%), Positives = 181/693 (26%), Gaps = 55/693 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPSLPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIFTLNYKDGSATKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGYGLSIDDVNAAIRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPEGVEFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHSEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +  +  L        ++ +G + +
Sbjct: 515 GFNRLFGRFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGLFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V        S       + Q+ +    + +      + L +          +     K 
Sbjct: 575 DVQLPPGATRS---RTDLTAQLLENYMLSREATGAVTMLLGFSFSGMGENAGLAFPTLKD 631

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            +E     +         +    L    ++ V 
Sbjct: 632 WSERGKGQSAAEEAAAFNQHFTGLADGTVMAVA 664



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 84/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R +     +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A    + I  PI         +  
Sbjct: 1009 ATLLGV-ILVPIFFVWVLSVLRRK 1031


>gi|270294561|ref|ZP_06200763.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270276028|gb|EFA21888.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1010

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 87/687 (12%), Positives = 186/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLSTVLTLIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q  ++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGSSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPLDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E G R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLILKEDGNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +              ++              N      S   
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIANAVYDRMEKMKKDLPEDVHYNYGFDNTKFIRASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  +V
Sbjct: 333 VKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK----KMKSIDINPLSRFFLI 534
              G   R F+I +  S++IS F A++    +   ++  +                   +
Sbjct: 453 GTTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREQQSWFYRKTEPFFEGMNRV 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSV 593
                  F++ R+  +  +I+  +    L  T       ++ +  I +  +    V    
Sbjct: 513 YSQSLAAFLKRRWIALPFTIVTILLIGVLWNTIPAEMAPLEDRSQISINTMGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S              G  N  + L+        Q  V E + K + +
Sbjct: 573 IRDYTEDINHLVDSIIPDAEAVTARVSSGSGNVRITLKDMKDRDYTQMEVAEKLSKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 67/166 (40%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +   I++ + + + +  +F+ +   L  + T+ L I   L F    GI  N+ +   ++ 
Sbjct: 846  MFAFILAIVLIYLILAAQFESFKDPLIIMLTVPLAIAGALVFMYFGGITMNIFSQIGIIM 905

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +           I  +  + L   + TS +  + ++P+A 
Sbjct: 906  LIGLVAKNGILIVEFAN---QKQEAGEDKMRAIKDASLQRLRPILMTSASTILGLIPLAY 962

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G            +  G++++   +++I   I  ++   R+K  
Sbjct: 963  ATGEGCNQRIAMGTAVVGGMLISTLLTMYIVPAIYSYVSTNRSKLK 1008



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V + ++K   ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIANAVYDRMEKMKKDLPEDVHYNYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASIDEVKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ AV+  +G  V+D +V+ + +          +  ++   +   E     + 
Sbjct: 380 GFSINVLSMLAVVLAVGLVVDDAIVMTENI---YVRIEKGMPPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G+       F+I ++  +++++ +++     +   +   R + +
Sbjct: 437 TTITLVAVFFPIVFMDGTTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREQQS 496


>gi|293606423|ref|ZP_06688782.1| multidrug efflux RND transporter MexD [Achromobacter piechaudii
           ATCC 43553]
 gi|292815181|gb|EFF74303.1| multidrug efflux RND transporter MexD [Achromobacter piechaudii
           ATCC 43553]
          Length = 1076

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/549 (12%), Positives = 152/549 (27%), Gaps = 46/549 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVALFILLAGVLAI-----PNMPVAQYPDVAPPA-------------ITITATY 49

Query: 63  DDFV-NGFLQMYSDELRSFLKKEG--IGVFSMRQ--IQNKITLSFADSRFKENIADKVTL 117
                    +  +  +   L      I   S+        IT +FA     +     V  
Sbjct: 50  PGASAKEVAESVTSIIEDKLNGAKGLIYYESVSDSYGTATITATFAPGTNPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V ++L    ++  L         +++   + +         +  I R   + +   
Sbjct: 110 RVSNVIAQLPAAVQQQGLQYEQTSTGFLMIVTVSSEDGSLDQTALADYITRNVQNPVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L     +  +++      N    G   G     +S 
Sbjct: 170 AGVGQFQLFAAPR-AMRIWVDPAKLVGFNLSMNEVNQAISAQNVLISGGSIGAPPNPESQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    ++S +                   +        +        +       
Sbjct: 229 RITATVTANGQLSTVE-------------GFGKIVLRANTDGSKVLLRDVARVEVGADNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G  L                +   T +      A L           +          
Sbjct: 276 QFGARLNGKPTAAFAIVLSPDANALATAQGVRQQMAELSKYFPGNIQYAIPYDTAPYVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++ L+    + + ++ + A++  LG ++ + ++
Sbjct: 336 SIEQVLHTLVEAMVLVFLVMYLFLQNVRYTLIPALVVPVAMLGSFAVMLALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    I    +  +   + 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERIMATEGLPPKEATKKAMPQISGAIIGITLVLVTVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F  G      R F++ M +SI  S   A++   A+   I     +K +     +    
Sbjct: 456 LAFMSGSVGVIYRQFSVAMAVSIFFSALLALTFTPALCATI-----LKPVPKGHHNEKKG 510

Query: 534 IPDCIAIQF 542
                  +F
Sbjct: 511 FFGWFNRKF 519



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 83/231 (35%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +           +     +++A  + +     ++++  P +   
Sbjct: 264 DVARVEVGADNYQFGARLNGKPTAAFAIVLSPDANALATAQGVRQQMAELSKYFPGNIQY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +  ++ + + + + +++  +   + L     + + +  +    
Sbjct: 324 AIPYDTAPYVKVSIEQVLHTLVEAMVLVFLVMYLFLQNVRYTLIPALVVPVAMLGSFAVM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  + A++  IG  V+D +VV + +     + T  +  ++   K++ +  G 
Sbjct: 384 LALGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERIMATEGLPPKEATKKAMPQISGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  ++      LP+A   GSV      F++ MA  I  +A  ++     +
Sbjct: 442 IIGITLVLVTVFLPLAFMSGSVGVIYRQFSVAMAVSIFFSALLALTFTPAL 492



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 86/253 (33%), Gaps = 14/253 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS   S         +   N                   A   +  +V +   
Sbjct: 791  TQGGMVPLSTFVSAEWVQGPVQVVRYNSYESMRIGGSAAPGYTTGQAMEEMQNLVAQLPQ 850

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                  T  + +         ++      + +S + + + +   ++ W   L  +  + L
Sbjct: 851  GFGYEWTGLSYQERQAGNQAPIL------MGLSLLIVFLVLAALYESWAIPLSVMLVVPL 904

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +   +  G+  ++     ++T+IG +  + +++ +  +     Y   +   +   
Sbjct: 905  GMLGAVALVSALGMSNDVYFQVGMVTVIGLAAKNAILIVEFAKD---QYARGMGLYESAV 961

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA-SSSIFIAAP 818
            ++        + TS+A  + VLP+A+  G+      +  + +  G++ A   + IF+   
Sbjct: 962  EAARLRFRPILMTSLAFILGVLPLALATGAGAASQRAVGLGVLGGMLAATPFAVIFVPTF 1021

Query: 819  ILLFIYDWRAKNA 831
             ++ +  ++ +  
Sbjct: 1022 FVVVLGLFKTRPR 1034


>gi|218676022|ref|YP_002394841.1| putative protein-export membrane protein SecF [Vibrio splendidus
           LGP32]
 gi|218324290|emb|CAV25603.1| putative protein-export membrane protein SecF [Vibrio splendidus
           LGP32]
          Length = 300

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/284 (29%), Positives = 147/284 (51%), Gaps = 7/284 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              +I   + R     IS++    SI  +   G N+G+DF GG+   +     V    ++
Sbjct: 1   MTKSISVTKIRQLMTMISLILLTLSITSIVARGFNWGLDFTGGVVADIQTKPNVTQVQLK 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S+L+S    D+       E N+ +R      D      + + + + +  I     I N+ 
Sbjct: 61  SHLDSALSQDVQVTAAGSEGNWQLRFNDTDLD------LRDALNQALLPIDSNFHIANSS 114

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
           ++GP++  E++ +G + ++   +  L+Y+  RF+W  ALG+I  LI DI   LG FA+  
Sbjct: 115 VIGPQVGLEMVEQGGLAILACFVLTLLYLSYRFEWRLALGSIAALIYDIVIVLGLFAVTQ 174

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           IEFNLT +AA+L ++GYS+ND +++ DR+R+  +      +   L+D+SI  TL R++ T
Sbjct: 175 IEFNLTVLAALLAVMGYSLNDSIIISDRIREVFRAKPDGET-DALLDQSIVSTLSRTLVT 233

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           S    ++V  + + GGS +  FAI +  GI+    SSI I   +
Sbjct: 234 SGTTLVTVSALWLLGGSALEGFAIALCVGILSGTWSSISIGTLL 277


>gi|220915665|ref|YP_002490969.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953519|gb|ACL63903.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1056

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 74/687 (10%), Positives = 178/687 (25%), Gaps = 43/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  MI   G L  L        + ++P+  P              +       
Sbjct: 8   RPIFAWVISIMIMLAGGLAIL-----GLPVSQYPAIAPPVVT---------VYATYPGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        +        +TL+F      +    +V   LQ 
Sbjct: 54  AQTLENSVTQVIEQKMTGIDHLRYMSAASDSSGNASVTLTFEAEADPDIAQMQVQNKLQN 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +         ++++    +       + +       +D I       
Sbjct: 114 AMPLLPQQVQQQGVRVLKTVSNYLLIAGLISEDGSMTRDDLNDYAFSNIVDPISRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D  +L     T   +S      N        G            
Sbjct: 174 EVTAFGTQ-YAMRIWLDADKLASFKLTPLDVSGALRAQNAQVSTGSLGAAPAVPGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 + +  +        +                    
Sbjct: 233 TVTSQTRL-------------QTPEQFLNILLRVNPDGSQVRLRDVGTANLGGETYELES 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   T +        L     P    +    +      S   
Sbjct: 280 YYNGKPAGGMGIRLASGANALKTADLVRAKLTELSQYFPPGMKVVYPVDSTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+F+ +   +  L+   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVKTLAEAIILVFLVMFLFLQNFRATLIPTIAVPVVLLGTFGVLAAAGFTVNTLTMLGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQITGALVGIALVLAAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      R F+IT+  ++ +S+  A+++  A+   I                   +   
Sbjct: 460 GGSVGVIYRQFSITVVSAMALSVVVALTLTPALCATILKPVEKGHHASEKGFFGWFNRLY 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                +    +     RA    +  ++L +      L         + +G I   V    
Sbjct: 520 GQGSGIYEKSVGWILRRAGRALIVYAVLLAALGGLFLHLPTGFLPEEDQGSIINMVQLPA 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +   R+ ++ +    +  +  + E    +      G           +K        
Sbjct: 580 GATMDRTRTVMQEVTRHYLEDEKDNVEAVMAITGFSFSGRGQNAGLAFVRLKDWSERPKK 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
                       +   ++        +
Sbjct: 640 EQHAPAIAGRAMRAFSQIKDGLAFAFV 666



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 80/218 (36%), Gaps = 8/218 (3%)

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
             + +   G    L         +      L  + +     + +    ++         E
Sbjct: 280 YYNGKPAGGMGIRLASGANALKTADLVRAKLTELSQYFPPGMKVVYPVDSTPFVRISIEE 339

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           +++     +I+  + M +++     +   L     + + +  T G  A  G   N   + 
Sbjct: 340 VVKTLAEAIILVFLVMFLFLQ---NFRATLIPTIAVPVVLLGTFGVLAAAGFTVNTLTML 396

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++  IG  V+D +VV + +     +    +S R+   KS+ +  G  V  ++      +
Sbjct: 397 GLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSMGQITGALVGIALVLAAVFV 454

Query: 785 PMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
           PMA +GG   VI   F+I +   + ++   ++ +   +
Sbjct: 455 PMAFFGGSVGVIYRQFSITVVSAMALSVVVALTLTPAL 492



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 77/223 (34%), Gaps = 9/223 (4%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + F+G    +++ +  PG S  +         K                           
Sbjct: 815  ERFNGSPAMVIQGEPSPGHSSGEAMAAMEEHVKALPAGIGLEWSGLSYEERLSGANAPAL 874

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  +A+     +   W      +  + L +   + F  L  ++  +     +LT
Sbjct: 875  YTISLLVVFLALA---ALYESWSIPFSVMLVVPLGVLGAVLFTELASMDAGVYFQVGLLT 931

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-- 786
             IG S  + +++ +  R    LY   +S  D   ++    L   + TS+A  + VLP+  
Sbjct: 932  TIGLSAKNAILIVEFAR---ALYEQGMSLFDAAVEAARMRLRPIIMTSLAFILGVLPLAI 988

Query: 787  -AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                G +   +  + +  G+V A   +I +     + I   R 
Sbjct: 989  ANGAGAAGQNAIGVAVIGGMVSATFLAILLVPVFFVKIAGKRK 1031


>gi|226329039|ref|ZP_03804557.1| hypothetical protein PROPEN_02941 [Proteus penneri ATCC 35198]
 gi|225202225|gb|EEG84579.1| hypothetical protein PROPEN_02941 [Proteus penneri ATCC 35198]
          Length = 1030

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 64/538 (11%), Positives = 148/538 (27%), Gaps = 38/538 (7%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
              GLL  +     +  + ++P+  P                V    +   V   +    
Sbjct: 1   MLAGLLALI-----KLPVAQYPTIAPPAI---------SISAVYPGADATTVQNTVTQVI 46

Query: 75  DELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           ++  + +        +        ITL+F      +    +V   LQ     L  + ++ 
Sbjct: 47  EQNMNGIDNMVYMSATSDSAGMMNITLTFEAGTDPDIAQVQVQNKLQLAMPLLPQEVQQQ 106

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +         ++++            + +  +     D +       +          +
Sbjct: 107 GISVDKSSSSFLMVAGFISADGSMSQDDIADYVGATIKDPLSRVTGVGETQLFGTQ-YAM 165

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP +L +   TT  +       NN       G             +  +  +    
Sbjct: 166 RIWLDPDKLVKYNMTTLDVIGAIRAQNNQVAAGQLGGTPPVPGQRLNVSIIAQTRL---- 221

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                        +    +        +        +                  +    
Sbjct: 222 ---------NTAEQFGDILMKVNTDGSQVKLKDLGIVEMGAENYSTIARFNGLPASGIGI 272

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
                 +   T        A +          +           S      T      LV
Sbjct: 273 KLATGANALDTATAVRAALAEMEPFFPAGLEVVYPYDTTPFVKISIFEVVKTLIEAIMLV 332

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
            +V+++ +   +  L+   ++ + ++ T A+LS  G ++   ++  +VL IGL VD  I+
Sbjct: 333 FVVMYLFLQNFRATLIPTIAVPVVLLGTFAVLSAFGYSINTLTMFAMVLAIGLLVDDAIV 392

Query: 434 VNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           V E +      +  S   +      +  S +    +      + + FFGG      R F+
Sbjct: 393 VVENVERVMQEEGLSPKEATRKSMGQIQSALVGIALVLSAVFIPMAFFGGSTGAIYRQFS 452

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
           IT+  ++++S+F A+ +  A+         +K I                  F ++  
Sbjct: 453 ITIVSAMILSVFVALILTPALCAT-----MLKPIPKGSHGVQTGFFGWFNRTFEKSSH 505



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 66/151 (43%), Gaps = 6/151 (3%)

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +I + + + + +++  + +   L     + + +  T    + FG   N   + A++  IG
Sbjct: 325 LIEAIMLVFVVMYLFLQNFRATLIPTIAVPVVLLGTFAVLSAFGYSINTLTMFAMVLAIG 384

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +     +    +S ++   KS+ +     V  ++      +PMA +GG
Sbjct: 385 LLVDDAIVVVENV--ERVMQEEGLSPKEATRKSMGQIQSALVGIALVLSAVFIPMAFFGG 442

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           S       F+I +   ++++   ++ +   +
Sbjct: 443 STGAIYRQFSITIVSAMILSVFVALILTPAL 473



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V   V  S+          + +   E+   +      G +       + +        
Sbjct: 773  NNVGQMVPFSSFIDTSKDPWLYGSPRLERYNGLPAVQIQGSATPGQSSGDAMLMMEDLAS 832

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
             L +    E  G      L       +  IS I + + +   ++ W      +  + L +
Sbjct: 833  KLPSGIGYEWTGMSYQERLSGNQAPALYTISLIVVFLCLAALYESWSVPFSVMLVVPLGV 892

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
               L   +L G+E ++     +LT IG S  + +++ +  +  M+         +    S
Sbjct: 893  IGALALTSLRGLENDVYFKVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--LIEATLDS 950

Query: 765  INETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +   L   + TS+A  + V+P+ +    G     S    +  G++ A S +I+      +
Sbjct: 951  VRMRLRPILMTSLAFMLGVIPLVLSNGAGSGAQNSVGTGVFGGMIAATSLAIYFVPIFFV 1010

Query: 822  FIYDWRAKNA 831
             I    AK  
Sbjct: 1011 VIRRRFAKKN 1020


>gi|222100688|ref|YP_002535256.1| Protein-export membrane protein SecF [Thermotoga neapolitana DSM
           4359]
 gi|221573078|gb|ACM23890.1| Protein-export membrane protein SecF [Thermotoga neapolitana DSM
           4359]
          Length = 292

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/293 (27%), Positives = 148/293 (50%), Gaps = 4/293 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I FM    + + +S++  + S+  +FT G N+G++F GG ++ V            
Sbjct: 1   MRREIDFMGKSKFFITVSLILIVVSLVSIFTKGFNFGVEFTGGSEIIVRFENVEITESDI 60

Query: 596 SNLESLQIGDISF---QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            N  S    + +           +    L+Y            +   +K  E +    + 
Sbjct: 61  RNAISRISDEFATARIVQVRSAGDPASVLKYSIVVPKTYEPDEKERIQKELESLLPGKVV 120

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +   +    + E+ R     ++++ + +LIYI IRF++ F + AI  L+ D+  T+GFF+
Sbjct: 121 SFNEISGTAAEEIRRGTWTAILVALVVLLIYITIRFRFVFGVAAIVALVHDVLITMGFFS 180

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG E N+ AVAA LTL+GYS+ND +V+ DR+R+NM+ Y    +  ++++ SIN+ L R+
Sbjct: 181 LFGYEINVAAVAAFLTLLGYSLNDTIVLSDRIRENMRRY-RGRNMANIVNMSINQVLART 239

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + TS+  F  V  + ++ G+ +  FA  M  G V+   SS+++ +PI++    
Sbjct: 240 INTSLTTFFVVFVLLLFAGNAVKPFAFGMTIGTVIGTYSSLYVVSPIVVKWSK 292


>gi|213650160|ref|ZP_03380213.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 551

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 136/457 (29%), Positives = 246/457 (53%), Gaps = 40/457 (8%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS+ ++              + L    +  ++ + +  ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              + ++P V+IS D  G       T+DNIGKP+A +                       
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEE 380

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I 
Sbjct: 381 VINIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIK 440

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
           +G  A +AGLV+ +LFMI  Y K+GL+A  ++  N++L + ++SLL  ATL++P IAGIV
Sbjct: 441 QGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIAGIV 500

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR 458
           L + +AVD+N+L+NERI+EE    ++V  +++    R
Sbjct: 501 LTLAVAVDANVLINERIKEELSNGRTVQQAINERLCR 537



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 56/109 (51%), Gaps = 5/109 (4%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I++G+   +   +  ++++   +K  F L A + L+ ++   +G  +L  
Sbjct: 429 TIGPTLGMQNIKQGLEACLAGLVVSILFMIFFYK-KFGLIATSALVANLVLIVGIMSLLP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           G   ++  +A ++  +  +V+  V++ +R+++ +   +   + +  I++
Sbjct: 488 GATLSMPGIAGIVLTLAVAVDANVLINERIKEEL---SNGRTVQQAINE 533


>gi|170696180|ref|ZP_02887314.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
 gi|170138908|gb|EDT07102.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
          Length = 1059

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/690 (10%), Positives = 177/690 (25%), Gaps = 45/690 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        +  +  +P+ +P + I          H       
Sbjct: 10  RPIFACVLSVVILLAGTIALF-----KLPVSEYPNVVPPSVI---------VHAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++FA     +     V   +  
Sbjct: 56  PKVIAEAVASPIEEQINGVENMLYMQSQANSDGNLTLTVTFALGTNPDLATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D +K  + T        +                    +    D++   +   
Sbjct: 116 ALPRLPDDVQKLGVTTIKSSPTVTMFMHLLSPDGRYDNTYLRNYALINLRDRLERIKGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ +   T  ++       N      + G          Q 
Sbjct: 176 EVQLWGGGDYSMRVWLDPQKVAERDLTATEVVNAIREQNVQVAAGVVGGSPAVPGTLLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    +      
Sbjct: 236 SVNARGRL-------------KTEQEFGGIIVKSSATGAVTHLRDIAKIELGASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +        L           +          S   
Sbjct: 283 LLDNKPAIALSINEAPGANSLQISDDVRAAMKELSVDFPSGLEYRIVYDPTRFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVIVVIVFLQTWRASIIPLLAVPVSIVGTFSLLLAFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +G+ VD  I+V E +     +  S   +           I    +T +   V L F  
Sbjct: 403 LAVGIVVDDAIVVVENVERNIARGLSARDATYTAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------------ID 524
              G   + FA+T+ +S +IS F ++++  A+   ++R    K                 
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLRSHDAKKDGLTRVMDKLFGGFFR 522

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                                +  G  +++   +  + ++    +  G       +  V 
Sbjct: 523 RFNTVFNVGSEKYSRGVAGSLKRKGTMLTVYGVLLGLTVVIMQIVPGGFVPAQDKEYLVS 582

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +  + + +    + L+          G  + +                  +       
Sbjct: 583 FAKLPNGASLDRTEQVLKEMGEMVMKEPGAAHAVAFPGLSVNGFTNIPSAGVLFIPLKPF 642

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                                I+     V 
Sbjct: 643 EERKGHSAADIAASLNRQFSSIKDAFTAVF 672



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    +   + N+     ++ L+  +  + +++ +  R+  
Sbjct: 900  SLSLPLAVILIVPMSILSALTGVWITHGDNNVFTQIGLMVLVALASKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+A+    G  +  +  I + FG+
Sbjct: 958  -LEHDGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLALSTGAGSEMRQAMGIAVFFGM 1016

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1017 LGVTLFGLMLTPVFYVVLR 1035



 Score = 45.8 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 86/241 (35%), Gaps = 12/241 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V ++    ++ +R   +              +    + L           ++ + V+ 
Sbjct: 252 IIVKSSATGAVTHLRDIAKIELGASEYGLRSLLDNKPAIALSINEAPGANSLQISDDVRA 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         E          +R  I  VI + + A+ + +         W  ++ 
Sbjct: 312 AMKELSVDFP-SGLEYRIVYDPTRFVRSSIEAVIHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  +G  V+D +VV + + +N+      +
Sbjct: 371 PLLAVPVSIVGTFSLLLAFGFSINALSLFGMVLAVGIVVDDAIVVVENVERNIA---RGL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIVVAASSS 812
           S RD    ++ E  G  +  ++   A    L       G     FA+ +A   V++A +S
Sbjct: 428 SARDATYTAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNS 487

Query: 813 I 813
           +
Sbjct: 488 L 488


>gi|86605153|ref|YP_473916.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Synechococcus
           sp. JA-3-3Ab]
 gi|86553695|gb|ABC98653.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Synechococcus sp. JA-3-3Ab]
          Length = 1066

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/587 (14%), Positives = 172/587 (29%), Gaps = 43/587 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   +I  +G +       P   +D +P   P               + +   
Sbjct: 8   RRPVFASVCSIIIVLVGAVSI-----PLLPVDYYPQVAPPA-------------VRVTAV 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVT 116
                   ++    + L   +   EGI   S        ++IT++F+  R  +  A  V 
Sbjct: 50  YPGADAETVETAVTNVLEQEINGVEGIRYISSVSSSNGTSQITVTFSPDRDLDTAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTT-EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +  V ++L  +  +N L          + +     +      +  S        D + 
Sbjct: 110 NRVARVQARLPAEVIQNGLSVEKAGDSAFVQVVALRSEAGEYDELFVSNYAELFVRDALR 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                   +        +    DP+RL     T   +       N        G +    
Sbjct: 170 RIRGVSDVIVFGERTYAMRIWLDPTRLAGYGLTALDVVNAVRQQNIQVPAGQIGSQPSPP 229

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
               Q  V+    +S             +  +    +                 +     
Sbjct: 230 DQEVQISVQATGRLS-------------QPEEFAQIVLKASPDGSLVRIADVGRVELGAQ 276

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +          + +   +            A L     P  +  +        
Sbjct: 277 SYDTFFRIGGQEAVGIAITKQPDANALEVSRQVRQTLAELSRSFPPGLIYEIAFDATLFI 336

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV++VLF+ +   +  L+   +I + ++ T A + L G ++   
Sbjct: 337 TESVQEVIFTLLQAIVLVVLVLFIFLQDWRITLIPTVTIPVALLGTFAFVRLFGFSINTL 396

Query: 416 SIAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++ G+ L  GL VD  I+V E I      +          G +     +  + +  L   
Sbjct: 397 TMFGLTLATGLVVDDTIVVVENISRYIRDRGMRPLQGASAGMNEVLGAVIATTLVLLGLF 456

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V + FF G +    R FA+T+ +S+ +S F AI++  A+   +I  +         L  F
Sbjct: 457 VPIAFFPGTSGRIYRQFAVTIAVSVSLSTFNAITLAPALSALLI--RPRSEQMFWLLRWF 514

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
               + I   + R     V + +L     +  L      + +   G 
Sbjct: 515 DRAVEGIRAAYRRFLELVVKLRLLVVAGFVACLGLTYWLFQVVPTGF 561



 Score = 90.1 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 92/287 (32%), Gaps = 9/287 (3%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S          +           +   Q+ + A+    L  +                
Sbjct: 222 IGSQPSPPDQEVQISVQATGRLSQPEEFAQIVLKASPDGSLVRIADVGRVELGAQSYDTF 281

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
           F       V +            V   V++ + E+           +    +  +     
Sbjct: 282 FRIGGQEAVGIAITKQPDANALEVSRQVRQTLAELSRSFPPGLIYEIAFDATLFITESVQ 341

Query: 671 VGVIISAIAMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             +     A+++ + + F     W   L    T+ + +  T  F  LFG   N   +  +
Sbjct: 342 EVIFTLLQAIVLVVLVLFIFLQDWRITLIPTVTIPVALLGTFAFVRLFGFSINTLTMFGL 401

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G  V+D +VV + + + ++     +         +NE LG  + T++      +P+
Sbjct: 402 TLATGLVVDDTIVVVENISRYIR--DRGMRPLQGASAGMNEVLGAVIATTLVLLGLFVPI 459

Query: 787 AVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A + G+       FA+ +A  + ++  ++I +A  +   +   R++ 
Sbjct: 460 AFFPGTSGRIYRQFAVTIAVSVSLSTFNAITLAPALSALLIRPRSEQ 506



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 58/146 (39%), Gaps = 7/146 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   + ++ + + +  +F+ Y   L  +  + L +   L    L G+  ++     +
Sbjct: 876  QAPLIFALGSVFVFLVLAAQFESYVDPLIILLAVPLAVLGALSAQLLRGLANDIFCQVGL 935

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG +  + +++ +      +L    I       ++        + T+++  + + P+
Sbjct: 936  VMLIGLASKNSILIVEFAN---QLVAQGIPLVKAAIQAAETRFRAILMTALSTILGIFPL 992

Query: 787  AVWGGSVI---GSFAIPMAFGIVVAA 809
            AV  G+      S    +  G+ V+ 
Sbjct: 993  AVASGAGAASRQSVGTAVIGGMFVST 1018


>gi|325102897|ref|YP_004272551.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pedobacter saltans DSM 12145]
 gi|324971745|gb|ADY50729.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pedobacter saltans DSM 12145]
          Length = 1056

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 73/545 (13%), Positives = 157/545 (28%), Gaps = 40/545 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I  +G+L A+     Q  + +FPS  P               + +  + 
Sbjct: 8   RPVLSIVISLIIVFLGVLAAV-----QLPITQFPSISPPK-------------VNITAEY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +     L   L    G+   +     +    I + F         +  V  
Sbjct: 50  PGANGELMIKSVIIPLEQALNGVPGMKYMASDAGNDGEATIQVVFNLGTDPNQASLNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V +KL     +  +  T E+   ++           +            + ++   
Sbjct: 110 RVASVVNKLPPIVVREGVKVTREESNMLMYVNLYSKDTSLNGNFLYNYADINVLPELKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P R+     +  ++       +        G    + S 
Sbjct: 170 DGVGMADILGNREYAMRIWLKPDRMLAYKISAEEVMKALGEQSLEASPGKTGESSGKRSQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y+++     +                     +                 I     + 
Sbjct: 230 AFEYVLKYPGRFT-------------TKEGYENIVLRSSANGELLRLKDVAKIEFGSTLY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        +       + +  I+        L A         +          
Sbjct: 277 DLYSTLNNKSSAAIVLKQSYGSNASQVIKDIKAKMKELEASFPKGMKYEISYDVSKFLDA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  L+   ++ +++I T   +   G T+ L ++
Sbjct: 337 SMEKVVHTLVEAFILVGIVVFLFLGDWRSTLIPTIAVPVSLIGTFFFMQFFGITINLITL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +   +N SV  +           I           V 
Sbjct: 397 FALVLAIGIVVDDAIVVVEAVHAKMELENISVLKATKKAMHEISGAIVAITFLMAAVFVP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      R FAITM  SI++S   A+++  A+   +++    +      L+RF  
Sbjct: 457 VAFMSGPVGIFYRQFAITMATSIVLSGIVALTLTPALCAIMLKNNHGRHRKKTVLNRFID 516

Query: 534 IPDCI 538
             +  
Sbjct: 517 GFNHK 521



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 60/169 (35%), Gaps = 7/169 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             + I   +I    + + +  +++ +   L  I +L   I        LFG+E N+ A  A
Sbjct: 871  NQAIYIFLICLGFVYLILAAQYESFILPLSVILSLPAGIFGAFLLLKLFGLENNIYAQVA 930

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG    + V++ +     ++ +    S R    +         + TS A    ++P
Sbjct: 931  LVMLIGLLGKNAVLIVEFA---VQKHRAGYSVRSAALEGAKVRFRPILMTSFAFIAGLIP 987

Query: 786  M-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    G   +   +     A G++      + +   +         K  
Sbjct: 988  LVFASGPGALGNRTIGTAAAGGMLFGTIFGVVLIPGLYYIFGRIAEKRQ 1036



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 107/267 (40%), Gaps = 14/267 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G   + + ++   +L  ++   +      +              +  +       ++V+
Sbjct: 245 EGYENIVLRSSANGELLRLKDVAKIEFGSTLYDLYSTLNNKSSAAIVLKQSYGSNASQVI 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWY 691
           + +K K+ E+           +   +S+ L   + K +  ++ + I + I +++    W 
Sbjct: 305 KDIKAKMKELEASFPKGMKYEISYDVSKFLDASMEKVVHTLVEAFILVGIVVFLFLGDWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L     + + +  T  F   FGI  NL  + A++  IG  V+D +VV + +   M+L 
Sbjct: 365 STLIPTIAVPVSLIGTFFFMQFFGITINLITLFALVLAIGIVVDDAIVVVEAVHAKMELE 424

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVL---PMAVWGGSVI--GSFAIPMAFGIV 806
              IS      K+++E  G  V  ++   ++ +      + G   I    FAI MA  IV
Sbjct: 425 N--ISVLKATKKAMHEISGAIV--AITFLMAAVFVPVAFMSGPVGIFYRQFAITMATSIV 480

Query: 807 VAASSSIFIAAPI-LLFIYDWRAKNAR 832
           ++   ++ +   +  + + +   ++ +
Sbjct: 481 LSGIVALTLTPALCAIMLKNNHGRHRK 507


>gi|206602538|gb|EDZ39019.1| SecF export membrane protein [Leptospirillum sp. Group II '5-way
           CG']
          Length = 321

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 90/295 (30%), Positives = 147/295 (49%), Gaps = 5/295 (1%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSV 593
             +I FM  R   + IS +F +  +  L        N GIDF GG  + V   + V L  
Sbjct: 7   NPSIDFMGKRKISLTISAVFLLLGLVALLQISRGKANLGIDFVGGTAVQVHFQKNVSLQS 66

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VRS LE      +  QN     + L+R +    D    +  L +   +        TI +
Sbjct: 67  VRSLLEKDGFHGVQIQNIQSSSDILIRTKVGKKDGSPVSSAL-LKDLRSGFPGNPMTILS 125

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP I  EL  K  + ++ S   +++YI  RF++ F + A  +   ++   LG   L
Sbjct: 126 ATEIGPTIGNELAGKAFLAILYSIFGIIVYIAFRFEFRFGVAAAISTFHNVMAVLGILYL 185

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G+E NL  V A+LTL GYS+ D VVV+DR+R+ ++   +  S  +LI++ IN+ L R+V
Sbjct: 186 LGVEINLLVVTALLTLAGYSLTDTVVVFDRIREQLRR-ASRQSMEELINQGINQVLSRTV 244

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             S    + ++ +  +GG VI  F++ +  G+V+   +SIF+A+P+LL I   + 
Sbjct: 245 VVSSTVVLVLVALFFFGGPVIHDFSLALLLGVVIGTFASIFVASPLLLVIPKGKK 299


>gi|284052875|ref|ZP_06383085.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Arthrospira
           platensis str. Paraca]
          Length = 1062

 Score =  182 bits (461), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/522 (11%), Positives = 138/522 (26%), Gaps = 39/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +G +        +  +  FPS  P                     
Sbjct: 8   KRPVFATVCSLVIILVGFV-----GFTRLPVQEFPSIDPPVVR---------VRTTYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + ++       S R+  + I + F   R  E     V   +  
Sbjct: 54  NAEVVETEVTEILEAAINGVQGLRTMTSSSREGLSSINVEFELERDLEVAVQDVLSRVSR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++      +  I+      D      +E S    +   + +       
Sbjct: 114 ATGRLPSDVNNPVVSKDGSDDDRIMWIAIYGD--RFSTLELSNYADQFLRNSLETVNGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  R+     T   +       N            +        
Sbjct: 172 SIFIGGERRYAMRIWLDAKRMAARNVTPLDVENALQRQNVEIPSGRIEGETMEFPVRTLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +    I        +                    
Sbjct: 232 RLQTPP-------------------EYEDLIIRRNPDGTQIRIGDIGYAEIGAESDRTIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S  +  +              L           V          +   
Sbjct: 273 RFRGQPAVTIGVSRLSDANLLEVATGVKERMKELSQNFPDGMNYTVAVDYSEFVQVAIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +   LV++V+F+ +   +  L+   +I +++I     +  LG ++ + ++  + 
Sbjct: 333 VWQSLLLAISLVVLVIFLFLKNWRATLIPTITIPVSLIGAFGAMFFLGFSINVLTLFALT 392

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L  GL VD  I+V E I    + K    F +           +  + +  +   V + F 
Sbjct: 393 LATGLVVDDTIVVLENIVRYIDEKKMHPFQAAIHAMGEVVFAVIATTVVLIAVFVPVSFS 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           G   G     FAIT+ +S++ S F A+++  A+   I++   
Sbjct: 453 GGATGQIFNEFAITLAISVVFSSFVALTLAPAVSAIILKPSH 494



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + +  +       +      +        +   +    + +     ++   K++++  
Sbjct: 251 TQIRIGDIGYAEIGAESDRTIARFRGQPAVTIGVSRLSDANLLEVATGVKERMKELSQNF 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P        +   +  +  I +    ++++   +++ I++  K W   L    T+ + + 
Sbjct: 311 PDGMNYTVAVDYSEFVQVAIDEVWQSLLLAISLVVLVIFLFLKNWRATLIPTITIPVSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              G     G   N+  + A+    G  V+D +VV + + + +      +        ++
Sbjct: 371 GAFGAMFFLGFSINVLTLFALTLATGLVVDDTIVVLENIVRYIDE--KKMHPFQAAIHAM 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            E +   + T++      +P++  GG+       FAI +A  +V ++  ++ +A  +
Sbjct: 429 GEVVFAVIATTVVLIAVFVPVSFSGGATGQIFNEFAITLAISVVFSSFVALTLAPAV 485



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 92/276 (33%), Gaps = 12/276 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               + +          +  G I +   + + + LS + +  +S     I+  N       
Sbjct: 757  RYEVIVRGQSEFRASPEDIGEISVRSESGQMIPLSNLVTIRDSTLPPQINHFNRFRSATL 816

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                        A   + ++  + I E +       +               I    +S 
Sbjct: 817  EGSAAPGYSLGEALEALQDLADRTIPETMRTDLAGESREFSQAG-----DATIYIFGLSL 871

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
              + + +  +F+ +   L  +  + L +    G   L  +E N+ +   ++ LIG S  +
Sbjct: 872  AFIFLTLAAQFESFVDPLVILLAVPLSLLGAFGALWLAELELNIYSRIGLIMLIGLSTKN 931

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ +      +L     S      ++        + T+++    V+P+A     G   
Sbjct: 932  SILIVEFAN---QLREMGRSISQAAIEAGKVRFRPILMTALSTIFGVMPLAFATGAGAVS 988

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              S  + +  G++V+   S++I     +     +++
Sbjct: 989  RVSIGMSVMGGMLVSTLLSLYIVPVFYIIATTLQSR 1024


>gi|114798563|ref|YP_760627.1| protein-export membrane protein SecD [Hyphomonas neptunium ATCC
           15444]
 gi|114738737|gb|ABI76862.1| protein-export membrane protein SecD [Hyphomonas neptunium ATCC
           15444]
          Length = 535

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 186/539 (34%), Positives = 301/539 (55%), Gaps = 19/539 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   W V+L   +   G+++ALPN +    +   P  MPK  ++LGLDLRGG +L +E+
Sbjct: 2   LQFPAWKVLLVLGVLVWGVVMALPNAVN---MSNAPGFMPKQAVNLGLDLRGGVYLEMEI 58

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVF-----SMRQIQNKITLSFADSR---FKENIA 112
              + ++  L +++ ++RS   +            +R     I LS  D+      E   
Sbjct: 59  PPAEVISSRLSVFARDVRSAFARTADREPIYFQPELRGRTMLIKLSRPDADGNYPVEEAL 118

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
            ++   + G         K   +    +  I + +S  +   ++  A+ ++M I+R+R+D
Sbjct: 119 RRL-DRINGPIEGGLAGGKTFEITRAGQDGILVSVSSASESAMLEDALSKTMTIVRRRVD 177

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN------SKKGF 226
             G++E ++   G++RI+++ PGE DP RL+ LL    +M+F+ V  +            
Sbjct: 178 PEGVAEISLTPSGNNRIVLEAPGEPDPERLKTLLSRDGRMTFNLVESSPAEIASAQAGIV 237

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
             G R L   +    LV +  E+ G  +    +  + + ++P ++   +  GAR+F+E T
Sbjct: 238 KPGYRLLEGPETGPLLVREIPEVVGSDIAT-ASQGNDEANRPQINFRLNANGARKFYETT 296

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
           R+N G+  A+VLD  +++AP IN+ IP G  +I+G FT+  A  LAA++ AG +P K+  
Sbjct: 297 RNNSGQLFAIVLDDVIMSAPRINEPIPGGSVRITGTFTMTEAQDLAAIIAAGEMPAKVQF 356

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +++R V + LG DSI  G  A + GL L+  FMI+ YG  G+ A FS+  N++L  A LS
Sbjct: 357 LDQRVVSSTLGEDSIESGYRAAIVGLALVAFFMILAYGLQGIFAVFSLVANIVLIFAALS 416

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGI+L IG+AVD+N+LV ERIREE +  +SV+ ++  G+ RA  TI D+
Sbjct: 417 LLGATLTLPGIAGIILTIGMAVDANVLVFERIREEQQNGRSVWTAVQAGYERALITILDA 476

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           NIT L A V+L+  G G V+GFA+T+ L I+ S+FTA    R + IF ++  K K   I
Sbjct: 477 NITTLFAAVILYSLGSGPVKGFAVTLALGIITSVFTAFVFTRMLTIFWMKTFKTKRFAI 535



 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 72/210 (34%), Gaps = 4/210 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G                 E+       +  +V   +  + I  G    I+    + 
Sbjct: 327 VRITGTFTMTEAQDLAAIIAAGEMPAKVQFLDQRVVSSTLGEDSIESGYRAAIVGLALVA 386

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + +     + A+ +L+ +I       +L G    L  +A ++  IG +V+  V+V+
Sbjct: 387 FFMILAYGLQ-GIFAVFSLVANIVLIFAALSLLGATLTLPGIAGIILTIGMAVDANVLVF 445

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+         S    +       L   +  ++    + + +   G   +  FA+ +
Sbjct: 446 ERIREE---QQNGRSVWTAVQAGYERALITILDANITTLFAAVILYSLGSGPVKGFAVTL 502

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           A GI+ +  ++      + +F         
Sbjct: 503 ALGIITSVFTAFVFTRMLTIFWMKTFKTKR 532


>gi|293371578|ref|ZP_06617993.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
 gi|292633441|gb|EFF52009.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
          Length = 1049

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 176/683 (25%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSIAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSQDSVYNSLYLTNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-S 236
                          +    DP  +R    +  ++       N        G    +D +
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPQQVYQSIQSQNVEVSAGYIGQPIGQDNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  +                 +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRL-------------KSPEQFGNIIIRREQDGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAESFPSGVAYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I T A+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T+++    G   + FA+T+  S ++S F ++++  A+    +   K  +  I       
Sbjct: 458 PTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSNFFIYKGFNKA 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R          L  I  +  +         +  G     V   
Sbjct: 518 YDKTQGVYDKIVKWLLQRPGMALASYGALTVIALLLFMHWPSTFIPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  E +     S+                 G+         ++K       
Sbjct: 578 PAASLERTQAVGEKINGILDSYPEVKNYIGISGFSIMGGGEQSNSATYFVVLKNWSERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+  
Sbjct: 638 KEHTAAAIVNRFNGEAYMTIQAA 660



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/541 (8%), Positives = 136/541 (25%), Gaps = 43/541 (7%)

Query: 329  GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                +         K     +      +       G      G + ++  ++ ++     
Sbjct: 502  KSKPSNFFIYKGFNKAYDKTQGVYDKIVKWLLQRPGMALASYGALTVIALLLFMHWPSTF 561

Query: 389  VADFSIFLNVILTL------------------ALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            + D      + +                     +L           I+G  +  G    +
Sbjct: 562  IPDEDDGYFIAVVQLPPAASLERTQAVGEKINGILDSYPEVKNYIGISGFSIMGGGEQSN 621

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +      ++  + +      +  +                + A V     G GA  G  +
Sbjct: 622  SATYFVVLKNWSERKGKEHTAAAIVNRFNGEAYMTIQAAEVFAMVPPAIPGLGASGGLQL 681

Query: 491  ---------TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
                        +   I+   A    +  +  +    +              +       
Sbjct: 682  QLEDRRNLGPTEMQQAINALLASYHSKPALASVSSQYQANVPQYFLNIDRDKVQFMGIAL 741

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR------ 595
                   G  +   +    +     + +      +    +  +    V  S         
Sbjct: 742  NDVFSTLGYYMGAAYVNDFVEFGRIYQVKIEARDQAQRVIDDVLKLSVPNSAGEMVPFSS 801

Query: 596  -SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             + +E     D   +        L         +    + +E + K+           + 
Sbjct: 802  FTKVEEQLGQDQINRYNMYSTASLTCNVAPGSSTGQAIQEVEALFKEQLGDEFRYEWTSV 861

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +         I+ +I++    L+       W   + A+  L + +   +    + 
Sbjct: 862  AYQETQAGNTTTIVLIMALIVAF---LVLAAQYESWTSPVAAVIGLPVALLGAMIGCLIM 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+  S  + +++ +  R          S R+   ++ +  L   + 
Sbjct: 919  GTPVSIYTQIGIILLVALSAKNGILIVEFARDFRAE---GNSIREAAFEAGHVRLRPILM 975

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS A  + V+P+      G     +    + FG+ +    +         F+   + + +
Sbjct: 976  TSFAFVLGVMPLLFATGAGAQSRIALGAAVVFGMAMNTLLATIYIPNFYEFMQKLQERFS 1035

Query: 832  R 832
            +
Sbjct: 1036 K 1036



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S  N        +  Q           V   +++           
Sbjct: 267 DIARIDLGSASYSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAESFPSGVAY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  T    
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSN 507


>gi|293605253|ref|ZP_06687639.1| acriflavin resistance protein [Achromobacter piechaudii ATCC 43553]
 gi|292816309|gb|EFF75404.1| acriflavin resistance protein [Achromobacter piechaudii ATCC 43553]
          Length = 830

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 98/851 (11%), Positives = 234/851 (27%), Gaps = 65/851 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                  L   +   G+L           +   P                          
Sbjct: 10  RPVATSFLMIALLLSGILA-----WRMLPVAALPQVDYPIIQ---------VSTQYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            +     +    +     +        +     + ITL F+          +V   +   
Sbjct: 56  PNVTARAVTAPLERRFGQIPGVKQMSSTSGSGISVITLQFSLDVSLGVAEQEVQAAISAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     +          +L+   I             +  +   ++        
Sbjct: 116 ASLLPNDLPTPPVYRKVNPADVPILT-LAITSHSLPLPTVYDLVDTRMTQRLSQLSGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N+++    F              
Sbjct: 175 VSLAGGQRPAVRVQVNPMALAARGLQMSDVQEAIAKANSNQPKGSFDGPVRS-------- 226

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                           AN    +     ++                 I            
Sbjct: 227 ------------VIMDANDQLHSADEYRELIVAWKNGAPVRLGQVATIEDGAEDRYLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +     +    L   L A         +      +   S    
Sbjct: 275 VDQQPAVLVNIQRQPGANVIAVADQVKALLPQLTASLPAAAQVRILTDRTESIRASVRGV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +       GLV++V F+ +      L+   ++ L++I T   + L G +    ++  + +
Sbjct: 335 QWELVFAVGLVVLVTFLFLRNLPATLIPSLAVPLSLIGTFGFMHLAGFSTNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           G G  VD  I++ E I     +  S   +   G  +   T+    ++ +   + L F   
Sbjct: 395 GAGFVVDDAIVMLENIARYREQGHSPMSAALKGAGQIGFTLVSLTLSLIAVLIPLLFMED 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +     ++S               + 
Sbjct: 455 VVGRLFREFAITLAVAILISLAVSLTLTPMMCARL-LPAHVQSRPGLMDRIQARYAGWLD 513

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           +     R   + +    ++  +  L      + +   G +Q    + +      +    +
Sbjct: 514 VTLRHQRLTLLVMVGTVALTGLLYLLVPKGFFPVQDGGVLQGVTQSAQNTSFDAMARRQQ 573

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           ++    ++  +     +F+         +  +  +      + +  +     +    VG 
Sbjct: 574 AVAQALLADPDVQSLSSFIGIDGMNTTLNTGRLLINLKPWAERSAPLTDIMARLDARVGQ 633

Query: 660 KISRELIRKGIVGVII---------SAIAMLIYIWIRFKWYFALG-------AITTLILD 703
                L  + +  + I                   +  +W  AL        A+T L  D
Sbjct: 634 VQGISLTLQPVQELNIEDRVSRGQYLFSLTSPDNALLTQWSQALMQRLAQSPALTELSSD 693

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +    G      +E +    A +    G +++D V          ++ T  +S ++ I +
Sbjct: 694 L---QGNGRQAYLEVSRDTAARL----GVTMDDVVQALYNAFGQRQVATRGLSPQEAIRE 746

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           +    L   + T++AA    LP+ +    G  +       M  G++V+   ++F    + 
Sbjct: 747 AALLRLRPILMTTLAALFGALPLMLATGSGAELRQPLGWVMVGGLLVSQVLTLFTTPAVY 806

Query: 821 LFIYDWRAKNA 831
           LF +    +  
Sbjct: 807 LFFHRLGQRRG 817


>gi|91202932|emb|CAJ72571.1| strongly similar to RND multidrug efflux transporter MexF
           [Candidatus Kuenenia stuttgartiensis]
          Length = 1139

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/515 (13%), Positives = 147/515 (28%), Gaps = 39/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +GL+           + ++P   P               +V+    
Sbjct: 8   RPIFATVISILIVIVGLIA-----YFTLPVSQYPKVTPPT-------------IVVRASF 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +    +  L   +   E +   S +   N   ++T++FA     +     V  
Sbjct: 50  PGANPEVIADTVATPLEQEINGVEDMLYMSSQSTSNGMMQLTITFAIGTDIDKAQVLVEN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +         +++            +  S     +  D +   
Sbjct: 110 RIAVAEPRLPEEVRRIGITVRKSSPDMLLVVHLLSPDNTYDQLYISNYASIRVYDVLTRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L  +  T   +       N      + G   +   +
Sbjct: 170 GGVGNVTLFGAREYSMRVWLDPEKLYSMGMTVNDVVQSLREQNVEVAAGIIGQPPMPQGN 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V     +                 +    I       R         I       
Sbjct: 230 AFQISVNTLGRLVEE-------------KQFGDVIIRTGEDGRVTRLKDVARIELGARDY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L +              +   T E      A +           +          
Sbjct: 277 GVNSYLDSKSAQGLGIFQLPGSNALATAEAIEKTMARISKDFPKGLEYRIVYNPTKFVQQ 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T  I   LV IV+ + +   K  L+      ++++ T A++S  G +L   ++
Sbjct: 337 SINEVYHTLFIAFILVFIVVIIFLQDWKAALLPMIDAIVSLVGTFAVMSAFGFSLNNLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS---TIFDSNITALIAT 474
            G+V+ IG+ VD +I+V E I+    K      +     +        I     +  I T
Sbjct: 397 FGLVIAIGIVVDDSIVVVENIKRWMSKGLEPREATLKAMAEITGPVLAITLVLSSVFIPT 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
             L    G   R FA+T+ +S ++S   A+++  A
Sbjct: 457 AFLPGISGQFYRQFALTIAVSTILSAINALTLAPA 491



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 59/425 (13%), Positives = 136/425 (32%), Gaps = 19/425 (4%)

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            +T        I   IG  +D   ++ E               L     R   T+  S+ 
Sbjct: 81  QSTSNGMMQLTITFAIGTDIDKAQVLVENRIAVAEPR------LPEEVRRIGITVRKSSP 134

Query: 469 TALIATVVL-----FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
             L+   +L     +     +         +   I     +++  A    +  +   + +
Sbjct: 135 DMLLVVHLLSPDNTYDQLYISNYASIRVYDVLTRIGGVGNVTLFGAREYSMRVWLDPEKL 194

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
               ++   ++          A        +         + T G        G + +  
Sbjct: 195 YSMGMTVNDVVQSLREQNVEVAAGIIGQPPMPQGNAFQISVNTLGRLVEEKQFGDVIIRT 254

Query: 584 LANRPVD-LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
             +  V  L  V       +   ++          L   Q    +++A    +E    +I
Sbjct: 255 GEDGRVTRLKDVARIELGARDYGVNSYLDSKSAQGLGIFQLPGSNALATAEAIEKTMARI 314

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
           ++  P            K  ++ I +    + I+ I + I + I    W  AL  +   I
Sbjct: 315 SKDFPKGLEYRIVYNPTKFVQQSINEVYHTLFIAFILVFIVVIIFLQDWKAALLPMIDAI 374

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T    + FG   N   +  ++  IG  V+D +VV + ++   +  +  +  R+  
Sbjct: 375 VSLVGTFAVMSAFGFSLNNLTLFGLVIAIGIVVDDSIVVVENIK---RWMSKGLEPREAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            K++ E  G  +  ++      +P A      G     FA+ +A   +++A +++ +A  
Sbjct: 432 LKAMAEITGPVLAITLVLSSVFIPTAFLPGISGQFYRQFALTIAVSTILSAINALTLAPA 491

Query: 819 ILLFI 823
             + +
Sbjct: 492 RAVQL 496



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/123 (13%), Positives = 47/123 (38%), Gaps = 3/123 (2%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +      LI   +   W   L  +  + + +   +    L G++ N+ +    + L+G +
Sbjct: 951  VCVLFVFLILSSLYESWSLPLTIVLIVPMCLLSAIFGIWLRGMDNNILSQIGFVVLVGLA 1010

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +  +       T     + + ++    L   + TS A  + V+P+ +  G+ 
Sbjct: 1011 CKNAILIVEFAKDY---QDTGKGCEEAVIEASRVRLRPILMTSFAFILGVIPLLIATGAG 1067

Query: 794  IGS 796
               
Sbjct: 1068 RRD 1070


>gi|257485997|ref|ZP_05640038.1| AcrB/AcrD/AcrF family transporter [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 1047

 Score =  182 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 181/692 (26%), Gaps = 55/692 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPSLPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIFTLNYKDGSATKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGYGLSIDDVNAAIRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPEGVEFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHSEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +  +  L        ++ +G + +
Sbjct: 515 GFNRLFGRFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGLFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V        S       + Q+ +    + +      + L +          +     K 
Sbjct: 575 DVQLPPGATRS---RTDLTAQLLENYMLSREATGAVTMLLGFSFSGMGENAGLAFPTLKD 631

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +E     +         +    L    ++ V
Sbjct: 632 WSERGKGQSAAEEAAAFNQHFTGLADGTVMAV 663



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 84/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R +     +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A    + I  PI         +  
Sbjct: 1009 ATLLGV-ILVPIFFVWVLSVLRRK 1031


>gi|254391319|ref|ZP_05006523.1| protein-export membrane protein secF [Streptomyces clavuligerus
           ATCC 27064]
 gi|294811580|ref|ZP_06770223.1| Protein-export membrane protein secF [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440036|ref|ZP_08214770.1| preprotein translocase subunit SecF [Streptomyces clavuligerus ATCC
           27064]
 gi|197705010|gb|EDY50822.1| protein-export membrane protein secF [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324179|gb|EFG05822.1| Protein-export membrane protein secF [Streptomyces clavuligerus
           ATCC 27064]
          Length = 373

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/309 (28%), Positives = 151/309 (48%), Gaps = 14/309 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    I   F+  R+   G+SIL +I +I  L   GLN GI+FKGG            +
Sbjct: 10  RLHRGEIGYDFVAKRWLWYGVSILITIVAIAGLAIRGLNMGIEFKGGAVFTTP-KTSASV 68

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           SVV+ +           Q         +R+Q    D+   T+V  ++ K +      +  
Sbjct: 69  SVVQESAAEASGHHAIVQKLGNGT---LRVQVSELDTQQATKVQTVLAKDL---DVPADK 122

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            N E+VGP   +E+  K   G+ I  I ++IY+ I F+W  AL A+  LI D+T T+G +
Sbjct: 123 INKELVGPSWGKEIANKAWTGLGIFMILVVIYLAIAFEWRMALAALIALIHDLTITVGVY 182

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           A+ G E     V  +LT++GYS+ D VVV+D +++     T     ++ ++ ++S+N TL
Sbjct: 183 AIVGFEVTPGTVIGLLTILGYSLYDTVVVFDGLKEGAVGITKQTRWTYSEIANRSLNGTL 242

Query: 770 GRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ T++ A + V  +   GG      ++   ++ +  G+   A SSIFIA P++  + 
Sbjct: 243 VRSINTTVVALLPVAGLLFIGGGFLGAGMLNDISLSLFVGLAAGAYSSIFIATPLVADLK 302

Query: 825 DWRAKNARI 833
           +   +   +
Sbjct: 303 ERDPQMKAL 311


>gi|317481186|ref|ZP_07940261.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
 gi|316902682|gb|EFV24561.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
          Length = 1010

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 87/687 (12%), Positives = 186/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLSTVLTLIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q  ++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGSSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPLDVKNAVDNENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E G R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLILKEDGNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +              ++              N      S   
Sbjct: 273 KMNGVPMVGVVVIPQPGANHIEIANAVYDRMEKMKKDLPEDVHYNYGFDNTKFIRASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  +V
Sbjct: 333 VKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK----KMKSIDINPLSRFFLI 534
              G   R F+I +  S++IS F A++    +   ++  +                   +
Sbjct: 453 GTTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREQQSWFYRKTEPFFEGMNRV 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSV 593
                  F++ R+  +  +I+  +    L  T       ++ +  I +  +    V    
Sbjct: 513 YSQSLAAFLKQRWIALPFTIVTILLIGVLWNTIPAEMAPLEDRSQISINTMGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S              G  N  + L+        Q  V E + K + +
Sbjct: 573 IRDYTEDINHLVDSIIPDAEAVTARVSSGSGNVRITLKDMKDRDYTQMEVAEKLSKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 67/166 (40%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +   I++ + + + +  +F+ +   L  + T+ L I   L F    GI  N+ +   ++ 
Sbjct: 846  MFAFILAIVLIYLILAAQFESFKDPLIIMLTVPLAIAGALVFMYFGGITMNIFSQIGIIM 905

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +           I  +  + L   + TS +  + ++P+A 
Sbjct: 906  LIGLVAKNGILIVEFAN---QKQEAGEDKMRAIKDASLQRLRPILMTSASTILGLIPLAY 962

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G            +  G++++   +++I   I  ++   R+K  
Sbjct: 963  ATGEGCNQRIAMGTAVVGGMLISTLLTMYIVPAIYSYVSTNRSKLK 1008



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 76/240 (31%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    I      N       +V  Q           V + ++K   ++         
Sbjct: 260 RAELGPADIKSYMKMNGVPMVGVVVIPQPGANHIEIANAVYDRMEKMKKDLPEDVHYNYG 319

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + ++I       W   L     + + +        L 
Sbjct: 320 FDNTKFIRASIDEVKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLA 379

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+ ++ AV+  +G  V+D +V+ + +          +  ++   +   E     + 
Sbjct: 380 GFSINVLSMLAVVLAVGLVVDDAIVMTENI---YVRIEKGMPPKEAGIEGAKEIFFAVIS 436

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++       P+    G+       F+I ++  +++++ +++     +   +   R + +
Sbjct: 437 TTITLVAVFFPIVFMDGTTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREQQS 496


>gi|207091661|ref|ZP_03239448.1| preprotein translocase subunit SecF [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 323

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 156/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ +A+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALMAIMVYVSFRYEWRFALASVIALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|113869665|ref|YP_728154.1| cation/multidrug efflux pump [Ralstonia eutropha H16]
 gi|113528441|emb|CAJ94786.1| Cation/multidrug efflux pump [Ralstonia eutropha H16]
          Length = 1050

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/659 (11%), Positives = 169/659 (25%), Gaps = 50/659 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G+L  L     Q  + ++P+  P               + +    
Sbjct: 8   RPVFAWVLALIIVLGGILSIL-----QLPIAQYPNIAPPT-------------ISVTATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+      +   L     +  ++     +    IT++FA     +  + +V  
Sbjct: 50  PGASAKTLEDSVTSVIEQELNGAPNLLYYNSTSESSGLASITIAFAPGSNVDLNSVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  +         ++    +     + AI+    +  Q ID I   
Sbjct: 110 RLKRVEARLPAEVRQQGVRVDKAGNNYMMFLTVSSKSGTADAIQLGNYVSAQVIDSIRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L     T   ++      N        G        
Sbjct: 170 PGVGQADLFGT-EYAMRIWLDPAKLTGYNLTPTDVTAAVGEQNIQVAVGELGGTPSPKGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  ++                +    +                 +    A  
Sbjct: 229 ELNATVTTESRLT-------------TPEQFGNILLRTNPDGSSVRIKDVGRVELGGADY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L           V          
Sbjct: 276 STLARTNGKPSAAIAIKLAPTGNALATATAVRAKMEELSKNFPADYQYSVPYDTSAFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+    + + ++ T   L   G ++ + ++
Sbjct: 336 SIEEVIKTLLEAVVLVFLVMYLFLQNFRATLIPTLVVPIALLGTFGALLAFGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    I    +      + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLSPREATRKAMGQITGAIVGITLVLTAVFIP 455

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           + F           +  +  +   F+   I       ++      ++    L        
Sbjct: 456 MAF----------FSGSVGNIYRQFSLSLISSMAFSALLALTLTPALCATLLKPVEAGHH 505

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                F          S       +  +      Y I +   I   V+  + +  S +  
Sbjct: 506 HEKTGFFGWFNRTFARSATSYQGVVARILKRSGRYLIIYAVIIVGVVVLFKRLPSSFLPD 565

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             E         Q  +G          +  +     +  ++V + IT        +   
Sbjct: 566 --EDQGYMITVVQLPNGATQDRTIGVLKQIEDYYLQKESKVVDQMITVAGFSFFGRGQN 622



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 81/218 (37%), Gaps = 6/218 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V              +        +       G+++A    +    +++++  P 
Sbjct: 260 VRIKDVGRVELGGADYSTLARTNGKPSAAIAIKLAPTGNALATATAVRAKMEELSKNFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +         +  I + I  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 DYQYSVPYDTSAFVKISIEEVIKTLLEAVVLVFLVMYLFLQNFRATLIPTLVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N+  +  ++  IG  V+D +VV + +     +    +S R+   K++ +
Sbjct: 380 FGALLAFGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMSEEGLSPREATRKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
             G  V  ++      +PMA + GSV      F++ + 
Sbjct: 438 ITGAIVGITLVLTAVFIPMAFFSGSVGNIYRQFSLSLI 475



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 68/191 (35%), Gaps = 13/191 (6%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   + E   K         + Q+ E         ++        +S I + + +  
Sbjct: 835  TGEAMRVMEENFAKLPPGFGFEWSGQSYEERLAGSQEPILYT------LSLIIVFLCLAA 888

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             ++ W      +  + L +   L    L G+  ++     ++  IG S  + +++ +  +
Sbjct: 889  LYESWSIPFSVLLVVPLGVLGALLGVTLRGMPNDVYFKVGLIATIGLSAKNAILIVEFAK 948

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
                L        +   ++++      + TSMA  + VLP+A+    G +   +    + 
Sbjct: 949  D---LQAQGKGLIEATLEAVHLRFRPILMTSMAFILGVLPLAIATGAGSASQRAIGTGVI 1005

Query: 803  FGIVVAASSSI 813
             G++ A   +I
Sbjct: 1006 GGMITATVLAI 1016


>gi|197336344|ref|YP_002155637.1| protein-export membrane protein SecD [Vibrio fischeri MJ11]
 gi|197317834|gb|ACH67281.1| protein-export membrane protein SecD [Vibrio fischeri MJ11]
          Length = 607

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 149/497 (29%), Positives = 259/497 (52%), Gaps = 31/497 (6%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITL 100
             I LGLDLRGG   +L+VD +          +D L+  L++E I     + +  + + +
Sbjct: 127 EPIKLGLDLRGGVQFLLDVDVNQVYQAQRNELADSLKQELREERIRSVRFQKEGSDSLIV 186

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
                         +                   +    + ++ + L ++    V +  +
Sbjct: 187 RLPSEEASHATRQFIHKNYPTWQ-----------VTNGDDFDLKLTLKEDEKIAVRNLTV 235

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
           +Q+++ +R RI+++GI+E+ +QR G +RI I+LPG QDP+  + ++G TA ++F+ V   
Sbjct: 236 QQNLQTMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFYAVKEQ 295

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                       + D +G    V  K  ++G H+  A A+         V+I  D  G +
Sbjct: 296 -----GTGSTMVIPDQNGQPVRVGRKPVLTGDHIVDARASLGEMGM-AEVNIVLDSSGGK 349

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPSGKAQISGNFTIETA 328
              E +R N+GKP+A   +     +                Q+    + +I+G+ +++ +
Sbjct: 350 IMSEFSRHNVGKPMATSYNEYSRDSAGNTEQSNQIISVATIQSQLGSRFRITGSGSLQES 409

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             LA +LRAGSL   + IVEER +G  LG+++I  G  A+  GL L +LFM V Y + G 
Sbjct: 410 QELALLLRAGSLTAPVTIVEERTIGPTLGAENIQNGFAALGLGLGLTLLFMAVWYRRLGW 469

Query: 389 VADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           VA+ ++  N+++   LL+L+  A LTLP IAG+VL +G+AVD+N+L+ ERI+++ ++ ++
Sbjct: 470 VANIALIGNMVMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKQKEGRT 529

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           +  ++D GFS A+ TIFD+N T +I  VVL+  G G ++GFA+T+GL +L SMFT I   
Sbjct: 530 LAQAIDRGFSSAFGTIFDANFTTMITAVVLYTIGNGPIQGFALTLGLGLLTSMFTGIFAS 589

Query: 508 RAMMIFIIRYKKMKSID 524
           RA++  +        + 
Sbjct: 590 RAIINLVWGRDSRHDVR 606



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 92/260 (35%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  V        +    +            +    ++ L       G    Q
Sbjct: 348 GKIMSEFSRHNVGKPMATSYNEYSRDSAGNTEQSNQIISVATIQSQLGSRFRITGSGSLQ 407

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I+ G   + +     L+++ + ++  
Sbjct: 408 ESQELALLLRAGSLTAPVTIVEERTIGPTLGAENIQNGFAALGLGLGLTLLFMAVWYR-R 466

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++     
Sbjct: 467 LGWVANIALIGNMVMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKD---K 523

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                +    ID+  +   G     +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 524 QKEGRTLAQAIDRGFSSAFGTIFDANFTTMITAVVLYTIGNGPIQGFALTLGLGLLTSMF 583

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  I+  ++   +++
Sbjct: 584 TGIFASRAIINLVWGRDSRH 603


>gi|167625069|ref|YP_001675363.1| protein-export membrane protein SecF [Shewanella halifaxensis
           HAW-EB4]
 gi|167355091|gb|ABZ77704.1| protein-export membrane protein SecF [Shewanella halifaxensis
           HAW-EB4]
          Length = 302

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 74/274 (27%), Positives = 140/274 (51%), Gaps = 7/274 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           +AR+     S+L  + SI ++  +G N+G+DF GGI   V  +  +  + +   L     
Sbjct: 14  KARYLSSIFSVLIMLSSIGIILVNGFNWGLDFTGGIVTEVKLDPKIKSAQISELLAETSE 73

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            ++S  +      +++R                 +K  +  +     + N+ IVGP+I +
Sbjct: 74  QEVSVISAGEPGRWILRYA------KVDNAGAHDIKTVLAPLTDNVEVLNSSIVGPQIGQ 127

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + ++ + + +L Y+  RF+W  A GA+  L  D+   L FF+L  +EFNLT +
Sbjct: 128 ELAEQGGLALLAAMLCILAYLSFRFEWRLASGALLALFHDVIFVLAFFSLTQMEFNLTIL 187

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AAVL ++GYS+ND +V+ DR+R+ +      ++  ++   ++  T  R++ TS     +V
Sbjct: 188 AAVLAILGYSLNDSIVIADRVREVLIAKPK-MAIDEICSSAVQATFSRTMVTSGTTLFTV 246

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             + + GG+ +  F+I M  GI++   SS+ +  
Sbjct: 247 AALWIMGGAPLQGFSIAMFLGIMIGTISSVSVGT 280


>gi|222054325|ref|YP_002536687.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Geobacter sp. FRC-32]
 gi|221563614|gb|ACM19586.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Geobacter sp. FRC-32]
          Length = 1052

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/625 (11%), Positives = 160/625 (25%), Gaps = 55/625 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  M    GLL           + ++P   P               + +    
Sbjct: 8   RPIFAWVIAIMTMLAGLLAI-----KTLPVSQYPPIAPP-------------QITINAMY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +Q      +   L     +   S          I L+F           +V  
Sbjct: 50  PGASAQTVQDTVTQVIEQKLNGIDNLIYMSSTSDSAGAVAINLTFKAGTDPNIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         +++     +         +  ++    D I  +
Sbjct: 110 KLQLATPLLPQIVQRQGIQVVKSTRNFLMVVGLVSEDGSMGRHALTDYMVANIQDIISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    +P +L     TT+ +       N       FG        
Sbjct: 170 EGVGEVTVFGSQ-NAMRIWLNPVKLNNFHLTTSDVIAAVQAQNAQVSAGQFGGNPAPQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +                    +    +                         
Sbjct: 229 QLNATITARTL-------------MQTPEQFDAIVLRTNPDGSTVKLKDVAECKIGTENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     I        A  +   T +      A L          +           
Sbjct: 276 DIEARYKGKPIGGMALRLAAGANALDTADRVKAKMAELEKFVPQGVKVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +++F+ +   +  L+   ++ + ++ T+ +LS  G ++   ++
Sbjct: 336 SIEEVIQTLMEAVFLVFVIMFLFLQNIRATLIPTIAVPVVLLGTMGVLSAAGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +V+ IGL VD  I+V E +      +  S   +      +  S ++          + 
Sbjct: 396 FALVIVIGLLVDDAIVVVENVERIMSEEGLSPHDATIKSMGQITSALWGIATVLTAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519
           + FFGG      R F+IT+  ++++S+ TA+ +  A+   +                   
Sbjct: 456 MAFFGGSTGVIYRQFSITIISAMILSVLTAMILTPALCSTLLKPVAKGHEACESGWFCGF 515

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            +  +             +   F +   + V    + +      L         + +G I
Sbjct: 516 FRLFNKVFDWSRGKYEGIVGRSFGKPVRYLVVYGAIVAAMVFFFLRLPTAFLPDEDQGFI 575

Query: 580 QLGVLANRPVDLSVVRSNLESLQIG 604
              V              +E ++  
Sbjct: 576 ICQVQLPAGATQERTLKVIEQMEQH 600



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 81/199 (40%), Gaps = 12/199 (6%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +      +  ++K + + V +    +T         E+I+  +  V +  + M +++ 
Sbjct: 301 DTADRVKAKMAELEKFVPQGVKVVYPYDTTPFVKISIEEVIQTLMEAVFLVFVIMFLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T+G  +  G   N   + A++ +IG  V+D +VV + + 
Sbjct: 361 ---NIRATLIPTIAVPVVLLGTMGVLSAAGFSINTLTMFALVIVIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGR--SVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
               +    +S  D   KS+ +       + T + A    LPMA +GGS       F+I 
Sbjct: 417 -ERIMSEEGLSPHDATIKSMGQITSALWGIATVLTA--VFLPMAFFGGSTGVIYRQFSIT 473

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   ++++  +++ +   +
Sbjct: 474 IISAMILSVLTAMILTPAL 492



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 79/269 (29%), Gaps = 13/269 (4%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   +      +       V  S   +         +   N       + +      
Sbjct: 779  PKYRMLPEDINNWYVSNKTGEMVPFSAFATAHWQYGSPRLERYNGIPSVEIMGQAAPGVS 838

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   + +M  +    I    T  + E +            +  +  S + + + +  
Sbjct: 839  TGEAMAEMEKMAAQLPPGIGYEWTGLSYEEIQSGKQAP----ALYAI--SLLVVFLSVAA 892

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             ++ W      +  L L +   +    L  +  ++     +LT +G S  + +++   ++
Sbjct: 893  LYESWTIPFVNLLMLPLGLVGAVMAITLRMLPNDVYLQIGLLTTVGLSTKNAILIIQFIK 952

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
              M          +    ++   L   + TS+A F   LP+A+    G +   +    + 
Sbjct: 953  DQMHQ---GHELVEATLAAVKIRLRPVIMTSLAFFFGTLPLALTKGAGAAAQNAIGTAVT 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G++ A    +       + +    A+  
Sbjct: 1010 GGLLSATFIDLLFIPFFFVLVSRIFARKR 1038


>gi|329945616|ref|ZP_08293349.1| export membrane protein SecF [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328528619|gb|EGF55584.1| export membrane protein SecF [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 367

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/309 (25%), Positives = 140/309 (45%), Gaps = 13/309 (4%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L     +I F++ R     I+++    S  LL   GL  GIDFKGG ++ V       
Sbjct: 9   NELYSAKTSIPFVQRRRIWYLIAVVVIAGSAALLGAVGLTPGIDFKGGSEITVTGLSSPS 68

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  L    +   S     G  +  V+      D     R+  +  +  T     ++
Sbjct: 69  ERPANDVLSKDDLTAGSSVTTMGSSSVRVQTSQLSKD-----RLDSLAGELATAYKTDAS 123

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             +   VGP  S ++ +K   G+++  I + + IW  F+ W  A  A+  L  DI  T+G
Sbjct: 124 NVSATTVGPTWSSDVTKKAARGLVLFFIFVGLLIWAYFRTWKMAAAALLALCHDIVVTVG 183

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINE 767
            +AL G E     +  VLT++GYS+ D VVV+D++R+N + +   +  ++ +L + ++N+
Sbjct: 184 IYALSGFEVTPATIIGVLTILGYSLYDTVVVFDKIRENTEGFESQSRSTYAELANLAVNQ 243

Query: 768 TLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           T  RS+ TS+   + V  +      + G   +   A+ +  G++    SSIF+A P+L+ 
Sbjct: 244 TFIRSINTSVVGVLPVASLLVVGAFILGAGTLRDIALTLFIGMIAGTLSSIFLATPLLVD 303

Query: 823 IYDWRAKNA 831
           +     +  
Sbjct: 304 MRSREKRIK 312


>gi|190893579|ref|YP_001980121.1| multidrug efflux protein, Acr/RND family [Rhizobium etli CIAT 652]
 gi|190698858|gb|ACE92943.1| putative multidrug efflux protein, Acr/RND family [Rhizobium etli
           CIAT 652]
          Length = 1060

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 72/666 (10%), Positives = 165/666 (24%), Gaps = 37/666 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  +   +G +        Q  + ++P+ +P               + +    
Sbjct: 9   RPVLANVLALVFVLVGAVALF-----QLPVAQYPNVVPPT-------------VQVTTRF 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +     +         +    + ++FA     +     V  
Sbjct: 51  PGASAQTLVDTVALPIEQQVNGVQDMLYMQSTSASDGTYSLIVTFAIGTDPDQAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L    +   + T  +    +             ++  S   +    +++   
Sbjct: 111 RVAIAMSSLPEAVQLQGVTTQKKSTAILGFVSLTSSDSRYDSLFLSNYAVINLQNELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+ L+    T   +       +        G+  +    
Sbjct: 171 PGVGNVTVFGAGQYAMRIWMDPNLLQARGLTPQDVVNVVQQQSQEVTAGQIGIPPVPQGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +     ++           +   ++ ++       G R         +       
Sbjct: 231 VFQYTLNVNGRLN-----------EAADYENIIVKVESGQGGRITRVRDIGRVELGAQTY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                               + +     +       +L     P     V          
Sbjct: 280 SQSFSQNGRPAAGIGIFQLPEANAIAVAQAVNAKMEVLSKSFPPGLEYHVPFDTTKFVKA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+ + +   +  LV   ++ + +I   A ++ LG T+ L ++
Sbjct: 340 SIDEVYVTLIEAGVLVLIVILVFLQDWRAMLVPATTVPVTIIGAFAAMAALGFTVNLSTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIAT 474
             IVL IG+ VD  I++ E +        S   + +            I    +   I  
Sbjct: 400 FAIVLAIGIVVDDAIVIVEGVARHIEAGISGRKAAERAMEELLGPVIGITLVLMAVFIPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   R FA+ +  + LIS   A+++        +R              F   
Sbjct: 460 AFLPGLTGQLYRQFALVIAATALISAINAVTLKPTQCALWLRAPVPFDKRNVVYRGFNKG 519

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            D     +          S + +I ++ L+              + +       V   + 
Sbjct: 520 YDWGERHYAGLIGSMTRHSGIMAIAALALIGVAVWGLTRLPTAFLPIEDQGYVLVSAQLP 579

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
               +      +       E    V                 +    +  +V     +  
Sbjct: 580 DGASKERTDAVMEEVGKIAEATSGVDQVLTISGLSVLDNNASLQNAGVAYVVLKDWDERG 639

Query: 655 EIVGPK 660
           +  G  
Sbjct: 640 KQKGQD 645



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G +  I +   +L+Y  +      W   L  I+ + L +  T+      G+  NL     
Sbjct: 874  GQIYFIFALAMLLVYFVLAGQYESWILPLAVISAVPLALLGTVAALTAAGVANNLYTQIG 933

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LI  +  + +++ +  R+        +   D   ++        + TS A  + VLP
Sbjct: 934  LILLIALAAKNAILIVEYAREKRAE---GMEILDAAVEAARLRFRPILMTSFAFILGVLP 990

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + +    G S   S  I +  G++ +   +I       + +        R
Sbjct: 991  LVLATGAGASARKSIGISVFSGMIASTCLAILFVPSFYVLLQRLEEYWKR 1040



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/188 (19%), Positives = 77/188 (40%), Gaps = 9/188 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +E++ K     +      +T         E+    I   ++  I +L+++    
Sbjct: 308 QAVNAKMEVLSKSFPPGLEYHVPFDTTKFVKASIDEVYVTLIEAGVLVLIVILVFLQ--- 364

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       A  G   NL+ + A++  IG  V+D +V+ + +    
Sbjct: 365 DWRAMLVPATTVPVTIIGAFAAMAALGFTVNLSTLFAIVLAIGIVVDDAIVIVEGV---A 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +     IS R   ++++ E LG  +  ++      +P A      G +   FA+ +A   
Sbjct: 422 RHIEAGISGRKAAERAMEELLGPVIGITLVLMAVFIPAAFLPGLTGQLYRQFALVIAATA 481

Query: 806 VVAASSSI 813
           +++A +++
Sbjct: 482 LISAINAV 489


>gi|326317487|ref|YP_004235159.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323374323|gb|ADX46592.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1056

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/522 (13%), Positives = 147/522 (28%), Gaps = 41/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   G +       PQ  + R+P+  P               + L   
Sbjct: 7   RRPVFAWVIALFIVLFGAIAI-----PQLPIARYPAVAPPA-------------VSLFAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   L       +   L           S+    + +IT +F      E     V 
Sbjct: 49  YPGATPQTLNDSVVSLIERELSGVKNLLYFESSVDTSGSAQITATFKPGTNPELAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V  +L    +++ L   +     ++L            +  +  + R  + ++  
Sbjct: 109 NRIKAVEPRLPQAVRQSGLQVESASSGFLMLIGMTSRDGRYDEVGLNDYMARNIVQELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP+RL         ++      N        G       
Sbjct: 169 IDGVGRVQLFGA-EQAMRVWVDPARLLSYGLAMGDVTQAIEQQNAQVAPGRVGDAPTLPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S                +    +        +        +      
Sbjct: 228 QRVTVPLTVQGQLS-------------TPEQFAAIVLKAGTDGSKVVLGDVARVELGAQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                     V   A        +   T +      A L           V         
Sbjct: 275 YAFANRENGRVATSAAIQLSPGANAVRTAQAVQDRLAELARTMPAGMEVSVPFNTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T A    LV  V+F+ +   ++ L+      + ++ T  ++ + G ++ + +
Sbjct: 335 ISIEKVLHTLAEAMVLVFAVMFLFLQNVRYTLIPAIVAPIALLGTFTVMLVAGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           +    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMAAEGLSPRDATVRAMREITGAVVGITLVLTAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + F  G      R F ++M +SIL S F A+++  A+   +
Sbjct: 455 PMAFATGSVGVIYRQFTLSMAVSILFSAFLALTLTPALCATL 496



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 76/204 (37%), Gaps = 12/204 (5%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-W 685
            + A    L  + + +   + +S   NT         +++      +++    M +++  
Sbjct: 302 TAQAVQDRLAELARTMPAGMEVSVPFNTAPFVKISIEKVLHTLAEAMVLVFAVMFLFLQN 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +R+    A+ A   L      T     + G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 362 VRYTLIPAIVAPIAL----LGTFTVMLVAGFSINVLTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPM 801
               +    +S RD   +++ E  G  V  ++    +V     +    +      F + M
Sbjct: 417 -ERLMAAEGLSPRDATVRAMREITGAVVGITL-VLTAVFIPMAFATGSVGVIYRQFTLSM 474

Query: 802 AFGIVVAASSSIFIAAPILLFIYD 825
           A  I+ +A  ++ +   +   +  
Sbjct: 475 AVSILFSAFLALTLTPALCATLLR 498



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 58/146 (39%), Gaps = 6/146 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            ++  + + +  L+   +   W   L  +  + L +   +    L G+  ++     ++T+
Sbjct: 868  LLMALSALVVFLVLAALYESWSIPLAVMLVVPLGLVGAVAAVMLRGMPNDVFFKVGMITI 927

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG S  + +++ +  R   +L++      D    +    L   + TS+A  + V+P+ + 
Sbjct: 928  IGLSAKNAILIVEFAR---QLHSEGRGLLDAAVTAARLRLRPILMTSLAFALGVVPLMLA 984

Query: 790  GG---SVIGSFAIPMAFGIVVAASSS 812
             G       +    +  G+V     +
Sbjct: 985  SGASAETQHAIGTGVFGGMVSGTLLA 1010


>gi|325280298|ref|YP_004252840.1| acriflavin resistance protein [Odoribacter splanchnicus DSM 20712]
 gi|324312107|gb|ADY32660.1| acriflavin resistance protein [Odoribacter splanchnicus DSM 20712]
          Length = 1017

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/675 (12%), Positives = 187/675 (27%), Gaps = 52/675 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++  +G +  +        +  +PS  P                     
Sbjct: 9   KRPVFATVMNIIMMLVGCIGLVF-----LGVRDYPSVDPPII---------SVSTSFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +   + +          R  ++ IT+ F      E  A+ V   + G
Sbjct: 55  NADVIETQITEPLESAINGIPGIRSLTSQSRDGRSNITVEFELEVDLETAANDVRDKVSG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D     +         I       D      I+ SM   +   +++       
Sbjct: 115 AMRRLPKDVDPPTVSKADADAQPIFAVSLRSD--QRSLIDLSMYADQYYKERLQTISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DPS L     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSVRMRMDPSLLAAYGITPMDVRNAVTQENVELPSGRIEGENTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                     T +   ++   E G +                     
Sbjct: 233 RL--------------------MTIEDFNNLVIKEEGDKVIRFRDIGIAEVDAEDTRSIM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +   +    ++ A  + A L+          +   N      S + 
Sbjct: 273 KRNGVPMVACAIIPQPGANYIDIVDRAYEVMADLQKDLPDDVEAGIAFDNTVFIRNSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV++++F+ +   +  L+   +I ++++    ++ L G T+ + ++  IV
Sbjct: 333 VKDTIVEAFILVVLIIFLFLRNWRTTLIPVLAIPISLVGAFFVMYLAGFTINILTLLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD  I+V E I  +  +  S   +   G +  +  +  + I  +     + F  
Sbjct: 393 LAIGLVVDDAIVVMENIYTKIEQGMSPLEAGFKGSNEIFFAVIATTIALVAVFFPIVFLQ 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F+I +  +++IS F A++    +   ++      +        FF      
Sbjct: 453 GTTGRLFREFSIVITGAVIISSFVALTFTPMISTKLLIRNVTDNWFYRTTEPFFDGMVDY 512

Query: 539 AIQ----FMRARFWG---------VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    FM+ R+           V   +  +I S         N  I            
Sbjct: 513 YRRALEGFMKYRWIAPLILIGSGVVIWLLWQAIPSEMAPLEDRSNIRITSTAPEGATFEY 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                  +     + +   +   +   G       L     D   + R  + +  ++   
Sbjct: 573 MSRYADELSSYIEQEVPEQEKIIEMIGGGNTNRSNLNLWLVDPEERGRTQQEIADELGVQ 632

Query: 646 VPLSTIQNTEIVGPK 660
           V   T   T +   +
Sbjct: 633 VRNFTGARTMVSQQQ 647



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 72/198 (36%), Gaps = 9/198 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            V+  ++K + + V      +  +       E+    +   I+  + + +++     W  
Sbjct: 301 EVMADLQKDLPDDVEAGIAFDNTVFIRNSINEVKDTIVEAFILVVLIIFLFL---RNWRT 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  +  + + +        L G   N+  + A++  IG  V+D +VV + +        
Sbjct: 358 TLIPVLAIPISLVGAFFVMYLAGFTINILTLLAIVLAIGLVVDDAIVVMENI---YTKIE 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +S  +   K  NE     + T++A      P+    G+       F+I +   +++++
Sbjct: 415 QGMSPLEAGFKGSNEIFFAVIATTIALVAVFFPIVFLQGTTGRLFREFSIVITGAVIISS 474

Query: 810 SSSIFIAAPILLFIYDWR 827
             ++     I   +    
Sbjct: 475 FVALTFTPMISTKLLIRN 492



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 70/191 (36%), Gaps = 7/191 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
                +I   V     + T     K   E     +   +++ I + + +  +F+ +   L 
Sbjct: 816  AEMDRIAADVLDDNFKTTLSGSSKDFVESSSSLMFAFVLALIFIYLVLSAQFESFRDPLI 875

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             + T+ L +   +     F    N+ +   V+ LIG    + +++ +      +      
Sbjct: 876  IMFTVPLALIGAMVSLWYFDQTMNIFSQIGVIMLIGLVSKNGILIVEFAN---QRKAMGE 932

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
                 +  +        + TS++  + +LPMA+    G     +  I +  G+V A   S
Sbjct: 933  PMLIAVKNAAVARFRPILMTSLSTVLGILPMAIATGAGAESRVAMGIAVVGGMVCATFLS 992

Query: 813  IFIAAPILLFI 823
            +F+   I  ++
Sbjct: 993  LFVIPAIYSYL 1003


>gi|313107249|ref|ZP_07793446.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexD [Pseudomonas aeruginosa 39016]
 gi|310879948|gb|EFQ38542.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexD [Pseudomonas aeruginosa 39016]
          Length = 1043

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/705 (11%), Positives = 186/705 (26%), Gaps = 65/705 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GLL+       +  + ++P+  P               + +   
Sbjct: 7   KRPNFAWVVALFISLAGLLVI-----SKLPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +   +  L   L   +G+  F      N   +I ++F      +     V 
Sbjct: 49  YPGASAKVLVDSVTSVLEESLNGAKGLLYFESTNNSNGTAEIVVTFEPGTDPDLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             L+   +++        L         +++   +  +    S          R   +++
Sbjct: 109 NRLKKAEARMPQAVLTQGLQVEQTSAGFLLIYALSYKEGAQRSDTTALGDYAARNINNEL 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   +S      N       FG     
Sbjct: 169 RRLPGVGKLQFFSS-EAAMRVWIDPQKLVGFGLSIDDVSNAIRGQNVQVPAGAFGSAPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +      +  K  +                 +    +                 +    
Sbjct: 228 SAQELTATLAVKGTL-------------DDPQEFGQVVLRANEDGSLVRLADVARLELGK 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T        A L A         V       
Sbjct: 275 ESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPEDMQYSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + ++ TL ++ LLG ++ +
Sbjct: 335 VDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLMVMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGISPAEATVKAMKQVSGAIVGITLVLSAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F  G      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLKPIPEGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +              +    RA  + +  + L ++     L         +  G + +
Sbjct: 515 AFNRGFARVTERYSLLNSKLVARAGRFMLVYAGLVAMLGYFYLRLPEAFVPAEDLGYMVV 574

Query: 582 GVLANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            V                        R  + S+ +      +  G+   L    ++    
Sbjct: 575 DVQLPPGASRVRTDATGEELERFLKSREAVASVFLISGFSFSGQGDNAALAFPTFKDWSE 634

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +        + E   L        V P     L   G   +
Sbjct: 635 RGAEQSAAAEIAALNEHFALPDDGTVMAVSPPPINGLGNSGGFAL 679



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +  +IS +                 +++    +++    +++   P 
Sbjct: 262 VRLADVARLELGKESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 DMQYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    IS  +   K++ +
Sbjct: 382 LMVMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGISPAEATVKAMKQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A   GSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIVGITLVLSAVFLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             W   L     LI+ I       A+   G+  ++     ++T+IG S  + +++ +  ++
Sbjct: 890  SWSIPLS--VMLIVPIGAIGAVLAVMVSGMSNDVYFKVGLITIIGLSAKNAILIVEFAKE 947

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
                     S RD   ++        + TSMA  + V+P+A+  G+      +    +  
Sbjct: 948  LW---EQGHSLRDAAIEAARLRFRPIIMTSMAFILGVVPLALASGAGAASQRAIGTGVIG 1004

Query: 804  GIVVAASSSIFIAAPILLFI 823
            G++ A    +       +++
Sbjct: 1005 GMLSATFLGVLFVPICFVWL 1024


>gi|254780081|ref|YP_003058188.1| preprotein translocase subunit SecF [Helicobacter pylori B38]
 gi|254001994|emb|CAX30253.1| Protein-export membrane protein, SecD/SecF family [Helicobacter
           pylori B38]
          Length = 323

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVIVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ +A+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALMAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|330950806|gb|EGH51066.1| preprotein translocase subunit SecF [Pseudomonas syringae Cit 7]
          Length = 262

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 87/265 (32%), Positives = 147/265 (55%), Gaps = 5/265 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L ++ ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTVLALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIVSLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F+LT +AA L +IGYS+ND +VV+DR+R+N +L     S  + I+ S  +TL R++ TS+
Sbjct: 179 FDLTVLAAGLAIIGYSLNDTIVVFDRVRENFRLLRK-ASLIENINISTTQTLLRTIATSV 237

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMA 802
           +  ++++ + V+GG  +  F+I + 
Sbjct: 238 STLLAIVALWVFGGDSLEGFSIALF 262


>gi|15599794|ref|NP_253288.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexD [Pseudomonas aeruginosa PAO1]
 gi|9950847|gb|AAG07986.1|AE004873_8 Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexD [Pseudomonas aeruginosa PAO1]
          Length = 1043

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/705 (11%), Positives = 186/705 (26%), Gaps = 65/705 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GLL+       +  + ++P+  P               + +   
Sbjct: 7   KRPNFAWVVALFISLAGLLVI-----SKLPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +   +  L   L   +G+  F      N   +I ++F      +     V 
Sbjct: 49  YPGASAKVLVDSVTSVLEESLNGAKGLLYFESTNNSNGTAEIVVTFEPGTDPDLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             L+   +++        L         +++   +  +    S          R   +++
Sbjct: 109 NRLKKAEARMPQAVLTQGLQVEQTSAGFLLIYALSYKEGAQRSDTTALGDYAARNINNEL 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   +S      N       FG     
Sbjct: 169 RRLPGVGKLQFFSS-EAAMRVWIDPQKLVGFGLSIDDVSNAIRGQNVQVPAGAFGSAPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +      +  K  +                 +    +                 +    
Sbjct: 228 SAQELTATLAVKGTL-------------DDPQEFGQVVLRANEDGSLVRLADVARLELGK 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T        A L A         V       
Sbjct: 275 ESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPEDMQYSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + ++ TL ++ LLG ++ +
Sbjct: 335 VDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLMVMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGISPAEATVKAMKQVSGAIVGITLVLSAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F  G      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLKPIPEGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +              +    RA  + +  + L ++     L         +  G + +
Sbjct: 515 AFNRGFARVTERYSLLNSKLVARAGRFMLVYAGLVAMLGYFYLRLPEAFVPAEDLGYMVV 574

Query: 582 GVLANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            V                        R  + S+ +      +  G+   L    ++    
Sbjct: 575 DVQLPPGASRVRTDATGEELERFLKSREAVASVFLISGFSFSGQGDNAALAFPTFKDWSE 634

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +        + E   L        V P     L   G   +
Sbjct: 635 RGAEQSAAAEIAALNEHFALPDDGTVMAVSPPPINGLGNSGGFAL 679



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +  +IS +                 +++    +++    +++   P 
Sbjct: 262 VRLADVARLELGKESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 DMQYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    IS  +   K++ +
Sbjct: 382 LMVMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGISPAEATVKAMKQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A   GSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIVGITLVLSAVFLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             W   L     LI+ I       A+   G+  ++     ++T+IG S  + +++ +  ++
Sbjct: 890  SWSIPLS--VMLIVPIGAIGAVLAVMVSGMSNDVYFKVGLITIIGLSAKNAILIVEFAKE 947

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
                     S RD   ++        + TSMA  + V+P+A+  G+      +    +  
Sbjct: 948  LW---EQGHSLRDAAIEAARLRFRPIIMTSMAFILGVIPLALASGAGAASQRAIGTGVIG 1004

Query: 804  GIVVAASSSIFIAAPILLFI 823
            G++ A    +       +++
Sbjct: 1005 GMLSATFLGVLFVPICFVWL 1024


>gi|218129175|ref|ZP_03457979.1| hypothetical protein BACEGG_00750 [Bacteroides eggerthii DSM 20697]
 gi|217988553|gb|EEC54873.1| hypothetical protein BACEGG_00750 [Bacteroides eggerthii DSM 20697]
          Length = 1010

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/687 (12%), Positives = 194/687 (28%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G +           +  +PS                        
Sbjct: 9   RRPVLSTVLTLIILLFGFI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q  ++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGSSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +       + I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N            +  +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPIDVKNAVDNENVELPSGSIEGNTVELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E G R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLILKEDGNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGIVVIPQPGANHIQIADAVYERMEKMKKDLPEDVHYSYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  IV
Sbjct: 333 VKQTVYEAFILVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIERGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ +S        FF   + I
Sbjct: 453 GMTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLIKREKQSWLYRKTEPFFEGMNRI 512

Query: 539 AIQ----FMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+R R+  +  +    +       +       ++ +  I +       V    
Sbjct: 513 YSRSLAAFLRKRWIALPFTAATILIIGFLWNYIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E + +   S              G  N  + L+        Q  V E + K + +
Sbjct: 573 IRDYTEDINLLVDSITPDAEAVTARVSSGSGNIRITLKDMQDRDYTQMEVAEKLSKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        L G   N+ ++ A++  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAIVLAVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +  ++   +   E     + T++       P+    G        F+I ++  
Sbjct: 410 YVRIERGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMDGMTGRLFREFSIVVSGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   R K +
Sbjct: 470 VIISSFAALTFTPMLATKLLIKREKQS 496



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +           I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMQAIKDAALQRLRPILMTSASTVLGLIPLAFATGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +V+   +++I   I  ++   R+K  
Sbjct: 983  LVSTLLTMYIVPAIYSYVSTNRSKLK 1008


>gi|117919469|ref|YP_868661.1| preprotein translocase subunit SecF [Shewanella sp. ANA-3]
 gi|117611801|gb|ABK47255.1| protein-export membrane protein SecF [Shewanella sp. ANA-3]
          Length = 294

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/288 (26%), Positives = 150/288 (52%), Gaps = 9/288 (3%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I   + R+    ISI   + S+ ++   G N+G+DF GG+   V  +R +  S ++ 
Sbjct: 1   MKNINLTKWRYVSSAISIFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQP 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +    +++  +      +++R         A T    +   +    +    + NT I
Sbjct: 61  LLNAAYQQEVTVISASEPGRWVLRY--------ADTAQSNVDIAQTLAPLGEVQVLNTSI 112

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++ +EL  +G + ++++ + +L Y+  RF+W  A GA+  L+ D+   L FF+L  +
Sbjct: 113 VGPQVGKELAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFSLTQM 172

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT +AAVL ++GYS+ND +++ DR+R+ +      ++ +++ +++I  T  R++ TS
Sbjct: 173 EFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPK-LAIQEINNQAIVATFSRTMVTS 231

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               ++V  + + GG  +  F+I M  GI+    SSI +   +  F+ 
Sbjct: 232 GTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLG 279


>gi|71153374|sp|Q9KWV4|TTGE_PSEPU RecName: Full=Toluene efflux pump membrane transporter TtgE
          Length = 1048

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/687 (11%), Positives = 184/687 (26%), Gaps = 41/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G L      L +  + ++P+                  +V     
Sbjct: 8   RPIFAWVLAIIAMLAGALS-----LTKMPISQYPNIAAPAV---------SIQVVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L              +  I ++F      +    +V   LQ 
Sbjct: 54  AKTVQDTVVQVIEQQLNGLDGFRYMAAESASDGSMNIIVTFEQGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  L     +    ++             +    I  Q  D I       
Sbjct: 114 ATPRLPEEVQRQGLRVVKYQMNFFMVVGLVDKTGKMTNFDLGNLIASQLQDPISRINGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP +L     T   ++      N        G    R       
Sbjct: 174 DFLLFGSP-YAMRIWLDPGKLNSYQLTPGDVAQAIREQNVQVSSGQLGGLPTRSGVQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  ++            P   + ++     +    R  ++ R  +      +    
Sbjct: 233 TVVGKTRMT-----------TPAEFEEILVKVKADGSQVRVKDLDRVVLASENFAISAKY 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   T++         +A        I           S   
Sbjct: 282 RGQDSAGLGLGLRLASGGNLLETVKAVKAELEKQKAYLPEGVEVIYPYDTSPVVEASIDS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   ++ + ++   ALL   G ++ + ++  +V
Sbjct: 342 VVHTILEAVVLVFLVMFLFLQSLRATIIPTLAVPVVLLAAFALLPYFGISINVLTMYAMV 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +    +    +      V + FF
Sbjct: 402 LAIGLLVDDAIVVVENVERLMHDEGLSPLEATRKSMGQISGALVGIGMVLSAVFVPMAFF 461

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
           GG      + FA+T+ + + +S+  A+    A+   I           +       + + 
Sbjct: 462 GGSAGIIYKQFAVTIVICMSLSVLVALIFTPALCATILKAPENDAHHEKKGFFGWFNRSF 521

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +         + +  +++ +                + +G +   V    
Sbjct: 522 DRNSARFERGVGGILKHRGRYLLIFALITAGTGYLFTQIPKAFLPSEDQGLMMTEVRMPL 581

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     L+ ++   +  +    +    V      G       VL ++K        
Sbjct: 582 NASAERTEVVLQEVKDYLLKEEGQLVDHVMTVNGFNFAGRGQNSGLVLVVLKDWAARQAA 641

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
              + +           +    ++  +
Sbjct: 642 GEDVLSVAERANARFARIKDATVMAFV 668



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/197 (17%), Positives = 76/197 (38%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A    LE  K  + E V +    +T  V       ++   +  V++  + M +++ 
Sbjct: 303 ETVKAVKAELEKQKAYLPEGVEVIYPYDTSPVVEASIDSVVHTILEAVVLVFLVMFLFLQ 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +     + + +         FGI  N+  + A++  IG  V+D +VV + + 
Sbjct: 363 ---SLRATIIPTLAVPVVLLAAFALLPYFGISINVLTMYAMVLAIGLLVDDAIVVVENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
               ++   +S  +   KS+ +  G  V   M      +PMA +GGS   +   FA+ + 
Sbjct: 419 -ERLMHDEGLSPLEATRKSMGQISGALVGIGMVLSAVFVPMAFFGGSAGIIYKQFAVTIV 477

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++     +
Sbjct: 478 ICMSLSVLVALIFTPAL 494



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 47/400 (11%), Positives = 128/400 (32%), Gaps = 20/400 (5%)

Query: 452  LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +     RA +         ++A V       G   GF + +  ++ +   + ++     +
Sbjct: 645  VLSVAERANARFARIKDATVMAFVPPAVLEMGNAMGFDLYLQDNLGLGHESLMAARNQFL 704

Query: 512  IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
                    ++++  N           I  +  RA    +         +   ++ +    
Sbjct: 705  ELAAENPSLRAVRPNGKDDEPQFQVKIDDEKARALQVSIASINDTMSAAWGSMYVNDFID 764

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                K     GV ++R       +  + +     + F  F   +      + +    ++ 
Sbjct: 765  LGRVKRVYIQGVDSSRIAPEDFDKWYVRNALGEMVPFSAFATGEWIHGSPKLERYGGISA 824

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPK---------ISRELIRKGIVGVIISAIAMLI 682
              +L       +    +  I       P             E+       ++ +   +++
Sbjct: 825  VNILGEPAPGFSTGDAMIAIAQIMQQLPSGIGLSYNGLSYEEIRTGDQAPMLYALTVLIV 884

Query: 683  YI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            ++    +   W   +  I  + L I   +      G+E ++     ++T +G S  + ++
Sbjct: 885  FLCLAALYESWSVPMSVILVVPLGIFGAVLATLWRGLEADVYFQVGLMTTVGLSAKNAIL 944

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGS 796
            + +  ++  +     +       ++    L   + TS+A    VLPMA   G       S
Sbjct: 945  IIEFAKELYEKE--GVPLVKAAIEAARLRLRPIIMTSLAFTFGVLPMARATGASAGSQHS 1002

Query: 797  FAIPMAFGIVVAASSSIFIAA---PILLFIYDWRAKNARI 833
             A  +  G++ A   ++F       +++ +++   K A +
Sbjct: 1003 IATGVVSGMITATVLAVFFVPLFYVVVVKVFERNRKPAAL 1042


>gi|107099738|ref|ZP_01363656.1| hypothetical protein PaerPA_01000756 [Pseudomonas aeruginosa PACS2]
          Length = 1043

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/705 (11%), Positives = 186/705 (26%), Gaps = 65/705 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GLL+       +  + ++P+  P               + +   
Sbjct: 7   KRPNFAWVVALFISLAGLLVI-----SKLPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +   +  L   L   +G+  F      N   +I ++F      +     V 
Sbjct: 49  YPGASAKVLVDSVTSVLEESLNGAKGLLYFESTNNSNGTAEIVVTFEPGTDPDLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             L+   +++        L         +++   +  +    S          R   +++
Sbjct: 109 NRLKKAEARMPQAVLTQGLQVEQTSAGFLLIYALSYKEGAQRSDTTALGDYAARNINNEL 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   +S      N       FG     
Sbjct: 169 RRLPGVGKLQFFSS-EAAMRVWIDPQKLVGFGLSIDDVSNAIRGQNVQVPAGAFGSAPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +      +  K  +                 +    +                 +    
Sbjct: 228 SAQELTATLAVKGTL-------------DDPQEFGQVVLRANEDGSLVRLADVARLELGK 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T        A L A         V       
Sbjct: 275 ESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPEDMQYSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + ++ TL ++ LLG ++ +
Sbjct: 335 VDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLMVMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGISPAEATVKAMKQVSGAIVGITLVLSAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F  G      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLKPIPEGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +              +    RA  + +  + L ++     L         +  G + +
Sbjct: 515 AFNRGFARVTERYSLLNSKLVARAGRFMLVYAGLVAMLGYFYLRLPEAFVPAEDLGYMVV 574

Query: 582 GVLANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            V                        R  + S+ +      +  G+   L    ++    
Sbjct: 575 DVQLPPGASRVRTDATGEELERFLKSREAVASVFLISGFSFSGQGDNAALAFPTFKDWSE 634

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +        + E   L        V P     L   G   +
Sbjct: 635 RGAEQSAAAEIAALNEHFALPDDGTVMAVSPPPINGLGNSGGFAL 679



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +  +IS +                 +++    +++    +++   P 
Sbjct: 262 VRLADVARLELGKESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 DMQYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    IS  +   K++ +
Sbjct: 382 LMVMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGISPAEATVKAMKQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A   GSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIVGITLVLSAVFLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             W   L     LI+ I       A+   G+  ++     ++T+IG S  + +++ +  ++
Sbjct: 890  SWSIPLS--VMLIVPIGAIGAVLAVMVSGMSNDVYFKVGLITIIGLSAKNAILIVEFAKE 947

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
                     S RD   ++        + TSMA  + V+P+A+  G+      +    +  
Sbjct: 948  LW---EQGHSLRDAAIEAARLRFRPIIMTSMAFILGVIPLALASGAGAASQRAIGTGVIG 1004

Query: 804  GIVVAASSSIFIAAPILLFI 823
            G++ A    +       +++
Sbjct: 1005 GMLSATFLGVLFVPICFVWL 1024


>gi|120553519|ref|YP_957870.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Marinobacter
           aquaeolei VT8]
 gi|120323368|gb|ABM17683.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Marinobacter aquaeolei VT8]
          Length = 1055

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/662 (11%), Positives = 186/662 (28%), Gaps = 46/662 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G++           + R+PS  P               + ++ D 
Sbjct: 8   RPVFSWVLAIVAMLAGIMAIFV-----LPVQRYPSVAPPA-------------VEIQADY 49

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +     +         +    +TL+FA     +    +V  
Sbjct: 50  PGASADTVSNTVVQVIEQEMTGLDNLLYMGSTADSSGHATVTLTFAAGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+    +L    ++  +         +++            ++ +  I  +  + IG  
Sbjct: 110 KLKLAEPRLPEVVRQQGISVEKSSTSFLMVMAFVSTDGRLSKLDIADFISSELAEPIGRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DPS L     T A +S      N        G     +  
Sbjct: 170 TGIGSVQVFGS-EYAMRIWLDPSALTNYGLTVADVSAAIEAQNAQVTAGQLGGLPAVEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  ++                +    +        R        +      V
Sbjct: 229 QLNATVTAQTLLTSTE-------------EFRNILLKSMPDGSRVRLGDVARVELGGGAV 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +     +     E        L              +       
Sbjct: 276 QIDTFYDGEPAAGLGINLAPGANSLAVTEAVKARLQELEPYFPEGVEIRYPYQTAPFVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  L+   +I + ++ T A+++  G ++ + ++
Sbjct: 336 SIDAVVTTIIEAIALVVLVMLVFLQSWRATLIPAIAIPVVLLGTFAIMAAFGFSINMLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    +    S   +      +  S +    +      + 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMHEDGLSPMEATRKSMGQIASALIGIGVVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-----IDINPL 528
           + FF G      R F++++  ++++S+  A+ +   +   I++    ++           
Sbjct: 456 MAFFPGSTGAIYRQFSLSIAGAMVLSVLVALILSPMLCGRILKPTHERTLLQKLFGWFEA 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
               L    + +    AR   +       I  +  +    L  G          V+  + 
Sbjct: 516 GLGRLTRGYVRLVGHTARHAWLYTLAFLGIVGLVAVLFVRLPGGFLPAEDQGFAVVQYQL 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
              +  +  ++++Q+ +  F + D  +       +          +  +  K  +E  P 
Sbjct: 576 PAGATQQRTIDTIQVIEDYFMDQDEVQGLFTIAGFSFAGRAQNAGLAFVNLKPWSERDPE 635

Query: 649 ST 650
           + 
Sbjct: 636 TQ 637



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 85/243 (34%), Gaps = 7/243 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +     V L  V           I           L        +S+A T  ++   ++
Sbjct: 253 SMPDGSRVRLGDVARVELGGGAVQIDTFYDGEPAAGLGINLAPGANSLAVTEAVKARLQE 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           +    P                  I   +  +I +   +++ + +    W   L     +
Sbjct: 313 LEPYFPEGVEIRYPYQTAPFVEASIDAVVTTIIEAIALVVLVMLVFLQSWRATLIPAIAI 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T    A FG   N+  +  ++  IG  V+D +VV + +     ++   +S  + 
Sbjct: 373 PVVLLGTFAIMAAFGFSINMLTLFGLVLAIGLLVDDAIVVVENV--ERVMHEDGLSPMEA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             KS+ +     +   +      +PMA + GS       F++ +A  +V++   ++ I +
Sbjct: 431 TRKSMGQIASALIGIGVVLSAVFIPMAFFPGSTGAIYRQFSLSIAGAMVLSVLVAL-ILS 489

Query: 818 PIL 820
           P+L
Sbjct: 490 PML 492



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 77/242 (31%), Gaps = 11/242 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                LS V +         +   N    +              A   V  ++ +    + 
Sbjct: 792  EMTPLSEVTNGRWEYGSPRLERFNGVPSRQIQGEPAPGYSTGEAMAEVERLIAQLPDGVA 851

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               +  + +         L+   +  +++      +Y      W   +  +  + L +  
Sbjct: 852  GAWSGLSYQERQAGAQASLLY-ALSALVVFLALAALY----ESWTIPISVMLAVPLGVLG 906

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +    + G+  ++     +LT +G +  + +++ +  R    L    +   +   ++  
Sbjct: 907  AVLAAMVRGLPNDVFFQVGILTTVGVTARNAILLVEFAR---SLEDQGMKLIEATKEAAR 963

Query: 767  ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + TS+A  + VLP+A     G +   +    +  G++ A   + F      + +
Sbjct: 964  VRLRPILMTSVAFGMGVLPLAFASGAGATTRIAIGTAVLGGMISATILATFFIPLFYVVV 1023

Query: 824  YD 825
              
Sbjct: 1024 RR 1025


>gi|296391413|ref|ZP_06880888.1| multidrug efflux RND transporter MexD [Pseudomonas aeruginosa PAb1]
          Length = 1043

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 82/705 (11%), Positives = 186/705 (26%), Gaps = 65/705 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GLL+       +  + ++P+  P               + +   
Sbjct: 7   KRPNFAWVVALFISLAGLLVI-----SKLPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +   +  L   L   +G+  F      N   +I ++F      +     V 
Sbjct: 49  YPGASAKVLVDSVTSVLEESLNGAKGLLYFESTNNSNGTAEIVVTFEPGTDPDLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             L+   +++        L         +++   +  +    S          R   +++
Sbjct: 109 NRLKKAEARMPQAVLTQGLQVEQTSAGFLLIYALSYKEGAQRSDTTALGDYAARNINNEL 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   +S      N       FG     
Sbjct: 169 RRLPGVGKLQFFSS-EAAMRVWIDPQKLVGFGLSIDDVSNAIRGQNVQVPAGAFGSAPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +      +  K  +                 +    +                 +    
Sbjct: 228 SAQELTATLAVKGTL-------------DDPQEFGQVVLRANEDGSLVRLADVARLELGK 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T        A L A         V       
Sbjct: 275 ESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPEDMQYSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + ++ TL ++ LLG ++ +
Sbjct: 335 VDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLMVMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGISPAEATVKAMKQVSGAIVGITLVLSAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F  G      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLKPIPEGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +              +    RA  + +  + L ++     L         +  G + +
Sbjct: 515 AFNRGFARVTERYSLLNSKLVARAGRFMLVYAGLVAMLGYFYLRLPEAFVPAEDLGYMVV 574

Query: 582 GVLANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            V                        R  + S+ +      +  G+   L    ++    
Sbjct: 575 DVQLPPGASRVRTDATGEELERFLKSREAVASVFLISGFSFSGQGDNAALAFPTFKDWSE 634

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +        + E   L        V P     L   G   +
Sbjct: 635 RGAEQSAAAEIAALNEHFALPDDGTIMAVSPPPIDGLGNSGGFAL 679



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +  +IS +                 +++    +++    +++   P 
Sbjct: 262 VRLADVARLELGKESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 DMQYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    IS  +   K++ +
Sbjct: 382 LMVMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGISPAEATVKAMKQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A   GSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIVGITLVLSAVFLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             W   L     LI+ I       A+   G+  ++     ++T+IG S  + +++ +  ++
Sbjct: 890  SWSIPLS--VMLIVPIGAIGAVLAVMVAGMSNDVYFKVGLITIIGLSAKNAILIVEFAKE 947

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
                     S RD   ++        + TSMA  + V+P+A+  G+      +    +  
Sbjct: 948  LW---EQGHSLRDAAIEAARLRFRPIIMTSMAFILGVVPLALASGAGAASQRAIGTGVIG 1004

Query: 804  GIVVAASSSIFIAAPILLFI 823
            G++ A    +       +++
Sbjct: 1005 GMLSATFLGVLFVPICFVWL 1024


>gi|210135722|ref|YP_002302161.1| preprotein translocase subunit SecF [Helicobacter pylori P12]
 gi|210133690|gb|ACJ08681.1| protein-export membrane protein SecF [Helicobacter pylori P12]
          Length = 323

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 156/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKRTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ +A+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALMAIMVYVSFRYEWRFALASVIALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|317011776|gb|ADU85523.1| preprotein translocase subunit SecF [Helicobacter pylori
           SouthAfrica7]
          Length = 323

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 94/294 (31%), Positives = 157/294 (53%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVILSAILALLALGLLFFKGFSLGIDFAGGSLVQVRYAQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR+  E          +  G K  ++     P    AQ   L  +   I +      
Sbjct: 61  IKEVRALFEKEDRFKGVQVSEFGSKEEILI--KFPFVETAQNEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ +A+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALMAIMVYVSFRYEWRFALASVIALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VILFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|172040619|ref|YP_001800333.1| preprotein translocase subunit SecF [Corynebacterium urealyticum
           DSM 7109]
 gi|171851923|emb|CAQ04899.1| protein-export membrane protein SecF [Corynebacterium urealyticum
           DSM 7109]
          Length = 403

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 132/310 (42%), Gaps = 12/310 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            +        F+  R     I I   +  I  +   G N GIDF+GG ++ +  +  V  
Sbjct: 27  QMYNGTGNFPFVAKRRLWYQILIAIFVLCIATIGFRGFNLGIDFEGGTRISMPPSANVQQ 86

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKITEIV 646
             V            +     G  +  V        S  Q       + E  K    +  
Sbjct: 87  DAVERVFTEATGVAPNAVQTVGSGDSQVIEINSERLSEDQIRQARAALFEEFKPVNAQGQ 146

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                 N   V       + ++ ++ + +  +A+  YI +R +   A+ AI  +++D+T 
Sbjct: 147 ASEDAVNDSTVSESWGSSITKRMLLALGVFVLAVFAYIGLRMERDMAISAIIGVLIDLTV 206

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLIDKS 764
             G +AL G++ +   V  +LT++ YS+ D VVV+D++++N      +   ++ + ++ +
Sbjct: 207 VSGIYALLGLDVSPATVIGLLTILAYSLYDTVVVFDKVQENTAGLFDSNRATYGEQVNLA 266

Query: 765 INETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           IN+T+ RS+ TS+ + + +  +      + G   +   A+    G++    +SIF AAP+
Sbjct: 267 INQTVMRSINTSIFSLVPIAALLVIAVWLMGVGTLKDLALVQFIGVICGTFNSIFFAAPM 326

Query: 820 LLFIYDWRAK 829
           L+ +   + K
Sbjct: 327 LVSLKMRQKK 336


>gi|187921618|ref|YP_001890650.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Burkholderia phytofirmans PsJN]
 gi|187720056|gb|ACD21279.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phytofirmans PsJN]
          Length = 1064

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/687 (11%), Positives = 192/687 (27%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  IG             ++++PS  P               + +    
Sbjct: 8   RPILAWVIAIVIMMIGGASI-----ETLPVEQYPSVAP-------------VSVQITATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   L        +   S    Q +ITL+F      +    +V  
Sbjct: 50  PGASAETIATTVTQVIEQKLSGIDHLLYMSSTSSSSGQARITLTFQQGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++  +S L    ++  +         +++   +      ++I+    I  Q  D +   
Sbjct: 110 KVEQASSSLPETVQEQGVQVAKAANAFLMIVSLSSTDGSMNSIDLGNIIATQIEDPLTQI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L+ +  TTA ++      N        G      + 
Sbjct: 170 DGVGDVTLFGAQ-HAMRIWLDPVKLQAVGLTTADVTSAITNQNVQLSVGQIGGSPSTKTQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     ++                +    +        +        +       
Sbjct: 229 AINATISASSLLT-------------TPAQFGAILLRVNSDGSKVMLKDVARVEVGGDDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +     +        +        +             
Sbjct: 276 STDSRLNGKPAASLAVKLASGANAMSVAKAVRAKLDEMSGQLPRTVVVDYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+    + + ++ T A++S +G ++ + S+
Sbjct: 336 SIEEVVKTLVEAVMLVFVVMYVFLQNLRATLIPTIVVPVALLGTFAVMSAVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +       +   + 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERLIAEEGLSPVEATRKAMKQITGALVGITTVLIAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R F++T+  ++L+S+F A+++  A+   ++R   ++      +  +F 
Sbjct: 456 MAFFSGSTGAIYRQFSVTIVAAMLLSVFLALTLTPALCATLLRRADVEHQAKRGVLGWFN 515

Query: 534 I-------PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                       A+  +  +     +  +     + LLF    +  +  +    +    +
Sbjct: 516 RVLARGTDRYDSAVSRVIGKPMRYMVIYVLIAGVVALLFVKLPSSYLPDEDQGIIITSIS 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            PV     ++     ++          +K   +      G           +K   T   
Sbjct: 576 TPVGTPAAQTLETVKKVEAYYLGLPQVDKIIALTGFSFNGSGQNNALTFVKLKDWSTRRG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
              +                   I  +
Sbjct: 636 KDGSAAALIQHANMHFAATRDAQIFAL 662



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 87/244 (35%), Gaps = 6/244 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V              +        L        ++++  + +     +++  +
Sbjct: 258 SKVMLKDVARVEVGGDDYSTDSRLNGKPAASLAVKLASGANAMSVAKAVRAKLDEMSGQL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P + + +         +  I + +  ++ + + + + +++  +     L     + + + 
Sbjct: 318 PRTVVVDYPYDTTPFVKISIEEVVKTLVEAVMLVFVVMYVFLQNLRATLIPTIVVPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N+ ++  ++  IG  V+D +VV + +     +    +S  +   K++
Sbjct: 378 GTFAVMSAVGFSINVLSMFGLVLAIGLLVDDAIVVVENV--ERLIAEEGLSPVEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  +       +PMA + GS       F++ +   ++++   ++ +   +   
Sbjct: 436 KQITGALVGITTVLIAVFIPMAFFSGSTGAIYRQFSVTIVAAMLLSVFLALTLTPALCAT 495

Query: 823 IYDW 826
           +   
Sbjct: 496 LLRR 499



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 73/227 (32%), Gaps = 8/227 (3%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                    +   G  +F     E+            + A T   + +      +  L   
Sbjct: 814  DGEMVPFSAFATGKWTFGPPQIERFNRTLAMEITAQTGANTSTGQAMDAVDALVKKLPAG 873

Query: 652  QNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLG 709
               +  G      +   + I    IS I + + +  +   W   +  I  + L +   + 
Sbjct: 874  YGIDWTGQSYQERIAGSQAIYLYAISLIVVFLCLAGLYESWSIPIAVILVVPLGVLGAVL 933

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G+  ++     +L  IG S  + +++ +  +    L        +   ++    L
Sbjct: 934  GAHIRGLSDDIYFKVGLLATIGLSTKNAILIVEFAKD---LQAQGRGLIEATVEAARLRL 990

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
               + TS+A    VLP+ +    G +   +    +  G++ A   +I
Sbjct: 991  RPILMTSLAFIFGVLPLVISSGAGSASRHAIGTGVMGGMIAATLLAI 1037


>gi|172039558|ref|YP_001806059.1| preprotein translocase subunit SecF [Cyanothece sp. ATCC 51142]
 gi|171701012|gb|ACB53993.1| protein export membrane protein [Cyanothece sp. ATCC 51142]
          Length = 308

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/251 (29%), Positives = 143/251 (56%), Gaps = 9/251 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +     + +++  VR  L   ++G+ + Q  +G    ++ ++ +  D   +T++ + +  
Sbjct: 58  VEGTCEQSINVGEVRDILNQQELGNSTIQVLEGN---ILSIRTKNLDVDERTQLQQELND 114

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           KI            + VGP I +EL   GI+ +++S   +++Y+ IRFK+ +A  AI  L
Sbjct: 115 KIGNFDSE--TIQIDTVGPTIGQELFESGILALLVSFFGIIVYLSIRFKFDYAFFAILAL 172

Query: 701 ILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + D+  T G FA+ G+    E +   + A+LT+IG+SVND VV+YDR+R+N   Y+  +S
Sbjct: 173 LHDVLVTAGVFAVLGLVAGVEVDSLFLVALLTIIGFSVNDTVVIYDRIRENTDRYSEELS 232

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             ++++ S+N+TLGRS+ T++   + ++ + ++GG  +  FA+ +  G +  + SSIFIA
Sbjct: 233 INEIVENSVNQTLGRSINTTLTTLLPLVAIFLFGGETLKFFALALILGFIAGSYSSIFIA 292

Query: 817 APILLFIYDWR 827
           +  L +  + +
Sbjct: 293 STSLAWWRNRQ 303


>gi|187734621|ref|YP_001876733.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187424673|gb|ACD03952.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 1058

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/554 (12%), Positives = 169/554 (30%), Gaps = 40/554 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++     ++  +   +GL+           + ++P   P+              + L+  
Sbjct: 7   KHPAIAAVIAIVTTLLGLVCMF-----NLPISQYPEITPRT-------------IQLQAM 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L   +    G+   +     N    +++ F      +       
Sbjct: 49  FPGASAQAVADSVGTPLERQISGVQGMDYMTSVSSNNGVYNLSVIFEPGSDTDIDQVLTN 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           +     +S+L  + +   +    +  + +++          ++++ +     + +D++  
Sbjct: 109 MRYGQASSQLPQEVQSTGVTIKQQPGLPLMIYSLTSPDGSYNSVDLANYAQVKLVDELKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    D S++     +  ++       N +  G   G   + D 
Sbjct: 169 VEGVGEVQVYGAGRYAIRIWLDTSKMTHYGVSVNEVRGAISAQNTTNPGGKIGADPVPDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  +  +S                    DI   + G    +      +      
Sbjct: 229 QEQTITVRTQGRLS--------------EPHEFEDIIIRQNGDEILYLKDIAKVELGAED 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L   V    +       +   T +    L               V      A  
Sbjct: 275 YSATGRLNGEVSAAIVIFQSPGSNAIATADRVEKLLEAKAPLMPEGITGRVSLDTTTAVR 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    K T      LV +V+++ +   +  L+   ++ +++I T  L  +LG +L   S
Sbjct: 335 YSIDEIKHTFMEAVILVALVVYVFLQNWRATLIPLIAVPVSLISTFCLFPVLGFSLNTIS 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473
           + G+VL IGL VD  I+V E ++E   K  +   +              I        + 
Sbjct: 395 LLGMVLAIGLVVDDAIVVVEAVQEHIDKGLNPRMASFAAMQEVSGPVIAIALVLAAVFLP 454

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +++L    G   + FA+T+ +S+LIS F A+++  A+   +++ +      +        
Sbjct: 455 SLLLEGITGTLFKQFAVTIAISMLISAFNALTLSPALCALLLKPRNAGRKSLFSPFHRLF 514

Query: 534 IPDCIAIQFMRARF 547
                 +     R 
Sbjct: 515 NWCYGRVSNGYTRM 528



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 101/279 (36%), Gaps = 7/279 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                 + T G          I +    +  + L  +       +    + +        
Sbjct: 229 QEQTITVRTQGRLSEPHEFEDIIIRQNGDEILYLKDIAKVELGAEDYSATGRLNGEVSAA 288

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +V  Q    +++A    +E + +    ++P        +      R  I +     + + 
Sbjct: 289 IVIFQSPGSNAIATADRVEKLLEAKAPLMPEGITGRVSLDTTTAVRYSIDEIKHTFMEAV 348

Query: 678 IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           I + + +++  + W   L  +  + + +  T   F + G   N  ++  ++  IG  V+D
Sbjct: 349 ILVALVVYVFLQNWRATLIPLIAVPVSLISTFCLFPVLGFSLNTISLLGMVLAIGLVVDD 408

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
            +VV + +++        ++ R     ++ E  G  +  ++      LP  +     G++
Sbjct: 409 AIVVVEAVQE---HIDKGLNPRMASFAAMQEVSGPVIAIALVLAAVFLPSLLLEGITGTL 465

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              FA+ +A  ++++A +++ ++  +   +   R    +
Sbjct: 466 FKQFAVTIAISMLISAFNALTLSPALCALLLKPRNAGRK 504



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 74/232 (31%), Gaps = 7/232 (3%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V LS + +  E      +   N        V  +           + E+  + +      
Sbjct: 793  VPLSALVNIREIEDTEFVMHHNIYNAAKLNVMPRPGHSTQQVMDALEEVFHQTMDPTKVG 852

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               Q+      K+   +    I  +       LI + +  KW   L    T+ + +    
Sbjct: 853  FDYQDMSFQENKVRNSIGLGAIFTMSAVFAF-LILVALYEKWSLPLAVFLTVPIAVLGAY 911

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                  G+E  L A   ++ L+G +  + +++ +     M+         +    +    
Sbjct: 912  AGLFWQGMELTLYAQIGLVMLVGLAAKNAILIVEFANLEMQ---RGKGLMEATLVAARLR 968

Query: 769  LGRSVYTSMAAFISVLPMAV-WGGSVIG--SFAIPMAFGIVVAASSSIFIAA 817
            L   + TS+A  +  +P+ +  G   +   +    +  G+ VA     F+  
Sbjct: 969  LRPILMTSLAFVLGCIPLMLSSGSGALARNAIGTVVVIGMGVATLVGAFLIP 1020


>gi|157374395|ref|YP_001472995.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sediminis HAW-EB3]
 gi|157316769|gb|ABV35867.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sediminis HAW-EB3]
          Length = 1038

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 71/686 (10%), Positives = 178/686 (25%), Gaps = 40/686 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ +++  +GL+       P   +  FP   P  +I+                 
Sbjct: 9   RPKFAFVISTVLTLVGLISI-----PILSVSEFPEIAPP-QIN--------VSTSYSGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    +   + ++             +  + ++F      +    KV   +Q 
Sbjct: 55  AGVVKDTIAQPLEAEVNGVEGMLYMESKSANDGSYALNVTFEVGTDADMAQVKVQNRVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + K+  +    +    +++           ++  +        D +       
Sbjct: 115 AMPRLPEEVKRQGVKVEKQSPNMLMVVNLVSPNETFDSLFITNYAGLNIKDALARQNGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    DP+++     T   +       N        G   +      QY
Sbjct: 175 KVQVIGSLDYAIRIWLDPNQMASFGVTAKDVIAALQEQNIQVAAGRIGAAPVDPDQQFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  +                 +    +        +        +           
Sbjct: 235 TLQTKGRL-------------KDPQEFKDVMIRANNDGSKVVVSDVARVELGSQTYDAQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +            A L           V          S + 
Sbjct: 282 KLNNKPSAIIAVYQSPDANALEVAAGIKTEMAKLSERFPTDLEYEVLYDTTEFVETSITE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +   +  LV   +I +++I T A L L G ++   S+  ++
Sbjct: 342 VVQTLFISISLVVLVVYIFLQDARSTLVPGIAIPVSLIGTFAFLLLFGMSINTVSLFALI 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +           I  + +  L         
Sbjct: 402 LAIGIVVDDAIVVVENVTRLMQDEGLSPKEATSKAMKEVTGPIIATTLVLLAVFAPTAVM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
               G     F++T+ +++LIS   A+++  A+   +             S +       
Sbjct: 462 PGITGQMYAQFSVTICIAVLISSINALTLSPALCASLLRAPKQHETGFHASFNKYFERFT 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 ++    +     V    L ++              ++ K    + +       L
Sbjct: 522 GKYMGLVSSLTRKLSLVVVVYVCLIAVTGGVAKILPSGFVPMEDKKAFMVDIQLPDGASL 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +     ++ L    ++    +   +           S     ++  +        P    
Sbjct: 582 NRTEEVMKELVELTLAEPGVENVIHASGFSILTGSVSSNGGLMIVTLSSWEERDTPDMVE 641

Query: 652 QNTEIVGPKISRELIRKGIVGVIISA 677
                             +  +  S 
Sbjct: 642 AAIVAKLQVKYAANP--SVKAMAFSL 665



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 67/202 (33%), Gaps = 9/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +K              +     +  +E+    +  +I     +  Y+++      W  
Sbjct: 835  DAIKAMERAAEQSLPTGYSYQWTGQTFQEIKAGNLAPLIFGLALVFTYLFLVAQYESWTI 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                +  + + +        L G + NL A   ++ LIG +  + +++ +  +   +L  
Sbjct: 895  PFAVMLAVPIALLGAFLNIWLMGTDLNLYAQIGLVLLIGLACKNAILIVEFAK---QLRE 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  D  + +        + T+ +  + VLP+ +    G     +    +  G++ A 
Sbjct: 952  EGKSILDAGETAARLRFRAVLMTAFSFLLGVLPLVIATGAGAGSRRALGYSVFGGMLAAT 1011

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
                 +     + +   R +  
Sbjct: 1012 IVGTLLVPVFYVMMQKLRERVK 1033



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 93/237 (39%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +S V       Q  D   +  +     +   Q    +++     ++    K++E  
Sbjct: 260 SKVVVSDVARVELGSQTYDAQGKLNNKPSAIIAVYQSPDANALEVAAGIKTEMAKLSERF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P            +     I + +  + IS   +++ ++I        L     + + + 
Sbjct: 320 PTDLEYEVLYDTTEFVETSITEVVQTLFISISLVVLVVYIFLQDARSTLVPGIAIPVSLI 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F  LFG+  N  ++ A++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 380 GTFAFLLLFGMSINTVSLFALILAIGIVVDDAIVVVENV--TRLMQDEGLSPKEATSKAM 437

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            E  G  + T++       P AV     G +   F++ +   +++++ +++ ++  +
Sbjct: 438 KEVTGPIIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICIAVLISSINALTLSPAL 494


>gi|45170565|gb|AAO18187.2| putative resistance-nodulation cell division protein SdeB [Serratia
           marcescens subsp. marcescens ATCC 13880]
          Length = 1047

 Score =  182 bits (460), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/549 (11%), Positives = 148/549 (26%), Gaps = 39/549 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++       P   +  +P  +P               + +  + 
Sbjct: 10  RPIFAAVLSILIFVAGVIAI-----PLLPISEYPDVVPP-------------SVQVRAEY 51

Query: 63  DDFV-NGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                    +  +  L   +   E +         + +   T++F      +    +V  
Sbjct: 52  PGANPKEIAETVATPLEEAINGVENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  D ++  + T  +     ++           ++        +  D++   
Sbjct: 112 RVAQAEARLPEDVRRQGITTQKQSPALTLVVHLVSPSGKYDSLYLRNYATLKVKDELARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP+++     T + +       N        G   +    
Sbjct: 172 PGVGQVQIFGAGEYAMRIWLDPNKVAARGLTASDVVSAMQEQNVQVSAGQLGAEPMPTRS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                 I       
Sbjct: 232 DYLLSINAQGRLQTEE-------------EFGNIILKSGDNGEIVRLRDVARIEMGSGSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L                      
Sbjct: 279 ALRAQLNNKDAVGIGIFQSPGANAIELSDAVRGKMAELATRFPDGMSWKSPYDPTVFVRD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG +L   S+
Sbjct: 339 SIRAVVDTLLEAVILVVLVVILFLQTWRASIIPLLAVPISVVGTFAALYLLGFSLNTLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +           I    +      V +
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIAVVLCAVFVPM 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + FA+T+ +S +IS   ++++  A+   +++         + L      
Sbjct: 459 AFLSGVTGQFYKQFAVTIAISTVISAINSLNLSPALAARLLKPHGAPKDMPSRLIDRLFG 518

Query: 535 PDCIAIQFM 543
                    
Sbjct: 519 WLFRPFNRF 527



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   V TS+A     +P+ +    G  V G   I +  G+
Sbjct: 958  -LEMQGKGIVEAALEACRLRLRPIVMTSIAFIAGTIPLILGHGAGAEVRGVTGITVFSGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      +F+     + +    A+ A
Sbjct: 1017 LGVTLFGLFLTPVFYVTLRRLVARKA 1042



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPISVVGTFAALYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 425 E---GLSPLAAAHQAMREVSGPIIAIAVVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASSS 812
           ++   S
Sbjct: 478 ISTVIS 483


>gi|326773264|ref|ZP_08232547.1| protein-export membrane protein SecF [Actinomyces viscosus C505]
 gi|326636494|gb|EGE37397.1| protein-export membrane protein SecF [Actinomyces viscosus C505]
          Length = 367

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 77/309 (24%), Positives = 144/309 (46%), Gaps = 13/309 (4%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L     +I F+  R     I+++  + S  LL T GL  GIDFKGG ++ +       
Sbjct: 9   NELYSAKTSIPFVGKRKIWYLIAVVIILGSATLLGTVGLTPGIDFKGGSEITITGLSSPS 68

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  L    +   S     G  +  V+        +++ R+  +  +  T     ++
Sbjct: 69  ERPANEVLSKSDLAAGSSVTTMGSSSVRVQT-----SELSKQRLDSLAGQLATAYKTDAS 123

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             +   VGP  S ++ +K + G+++  I + + IW  F+ W  A  A+  L  DI  T+G
Sbjct: 124 NVSATTVGPTWSSDVTKKAVRGLVLFFIFVGLLIWAYFRTWKMAAAALLALCHDIIVTVG 183

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINE 767
            +AL G E     +  VLT++GYS+ D VVV+D++R+N + +   +  ++ +L + ++N+
Sbjct: 184 IYALSGFEVTPATIIGVLTILGYSLYDTVVVFDKIRENTEDFESQSRSTYAELANLAVNQ 243

Query: 768 TLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           T  RS+ TS+   + V  +      + G   +   A+ +  G++    SSIF+A P+L+ 
Sbjct: 244 TFIRSINTSVVGVLPVASLLFVGAFILGAGTLRDIALTLFIGMIAGTLSSIFLATPLLVD 303

Query: 823 IYDWRAKNA 831
           +     +  
Sbjct: 304 LRSRETRIK 312


>gi|194366381|ref|YP_002028991.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Stenotrophomonas maltophilia R551-3]
 gi|194349185|gb|ACF52308.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Stenotrophomonas maltophilia R551-3]
          Length = 1057

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/626 (10%), Positives = 159/626 (25%), Gaps = 48/626 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +     
Sbjct: 9   PVFAWVVAILISLSGVIAIL-----NLGVESYPNIAPP-------------QVTVSATYP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTTEKSVTQVIEQQLTGIDHLLYFSSSSASNGRASITLTFETGTDPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        +++     D    +    +  +  + +DQ+    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVIALRSDTPTINRDALNDIVGSRVLDQVSRIP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +++    + +++       N        G     +   
Sbjct: 171 GVGSTQQFGS-EYAMNIWLNPEKMQGYGLSASQVLAAVRAQNVQFAAGALGSDPSPEGQH 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I        R        +        
Sbjct: 230 FTATVSAEGRFS-------------SPQEFEDIILRANPDGSRVLLKDIARVAFGANNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     +        L+              +      S
Sbjct: 277 FDTQYNGKPTGAFAIQLLPGANALNVADAVRAKMDELQPSFPSGVTWFSPYDSTTFVKIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  L+    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IQEVVKTLFEAVLLVFLVMLIFLQNFRATLIPTLVIPVALLGTFLGMWMIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IG+ VD  I+V E +      +  +   +     ++    +    +      +  
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMTEEGLAPKPATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
              G   G   + FA+T+ +S+  S F A+    A+                 ++ +   
Sbjct: 457 ALQGGAAGEIYKQFALTIAISMAFSAFLALGFTPALCATFLKPTHNDNPNIIYRTFNKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     I      A  W +   +L ++C        G     + +G     V    
Sbjct: 517 DKISHTYVGHITSAVRHAPRWMILFVVLTALCGFLFTRMPGSFLPEEDQGYALAIVQLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDG 613
                        ++        ++G
Sbjct: 577 GSTKGQTNEVFAQMRGVLEKQDGYEG 602



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 78/237 (32%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  +              Q                 +++     +     ++    
Sbjct: 258 SRVLLKDIARVAFGANNYGFDTQYNGKPTGAFAIQLLPGANALNVADAVRAKMDELQPSF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      +        +  I++ +  +  + + + + + I  + +   L     + + + 
Sbjct: 318 PSGVTWFSPYDSTTFVKISIQEVVKTLFEAVLLVFLVMLIFLQNFRATLIPTLVIPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     + G   N   + A++  IG  V+D +VV + +     +    ++ +    K++
Sbjct: 378 GTFLGMWMIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERIMTEEGLAPKPATQKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P A+ G   G +   FA+ +A  +  +A  ++     +
Sbjct: 436 TQITGAVVAITVVLAAVFIPSALQGGAAGEIYKQFALTIAISMAFSAFLALGFTPAL 492



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 47/122 (38%), Gaps = 6/122 (4%)

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L    + G+  +L     ++T+IG +  + +++ +   +         + RD   ++  
Sbjct: 911  ALALSMMRGLPNDLFFKIGLITVIGLAAKNAILIVEFAVEQRAA---GKNLRDATIEAAR 967

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + TS A  + V+PMA+    G +   +    +  G++ A    + +     + +
Sbjct: 968  LRFRPILMTSFAFIMGVIPMAISSGAGANSRHAIGTGVIGGMLFATLLGLLMIPVFFVVV 1027

Query: 824  YD 825
              
Sbjct: 1028 RR 1029


>gi|152966994|ref|YP_001362778.1| protein-export membrane protein SecF [Kineococcus radiotolerans
           SRS30216]
 gi|151361511|gb|ABS04514.1| protein-export membrane protein SecF [Kineococcus radiotolerans
           SRS30216]
          Length = 330

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 146/311 (46%), Gaps = 15/311 (4%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L     +  F+  R     I+ +  + S  LL   GL YGI+F+GG +  V  +  VD
Sbjct: 8   NRLYTGESSFDFVGRRKLWFLIAAVLVLVSAVLLVKPGLTYGIEFEGGSEFRVTGSSDVD 67

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +  R  +ES+  G +      G     V+ +           + E+    +  +    T
Sbjct: 68  AA--REAVESVLPGTVPTVTTVGSDGVRVQTETVTTG-----ELDEIRSGLVERLGVPDT 120

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
              +  +GP   +++  K + G+++  + + I + + F+ W  A+ ++  L  D+  T G
Sbjct: 121 AVTSSSIGPSWGQDVTDKALTGLVVFLVIVSIVMTLYFRAWTMAVASLVALFHDLIITAG 180

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFRDLIDKSINE 767
            +AL G E    +V   LT++GYS+ D VVV+D++R+N +        +FRD  + +IN+
Sbjct: 181 VYALVGFEVTPASVIGFLTILGYSLYDTVVVFDKVRENTEAAFAKKDRTFRDAANLAINQ 240

Query: 768 TLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           T+ RSV T++ A + V  +        G   +   ++ +  G++V A SSIF+A P+L  
Sbjct: 241 TVVRSVNTTVVALLPVAAILFIGDLLLGAGTLRDISLALFVGMLVGAYSSIFVATPLLAA 300

Query: 823 IYDWRAKNARI 833
           +    AK   +
Sbjct: 301 LRSREAKVQEL 311


>gi|257068565|ref|YP_003154820.1| protein translocase subunit secF [Brachybacterium faecium DSM 4810]
 gi|256559383|gb|ACU85230.1| protein translocase subunit secF [Brachybacterium faecium DSM 4810]
          Length = 364

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 123/291 (42%), Gaps = 13/291 (4%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R      S+   +         G N GI+F GG +  +      + +  R  +     G
Sbjct: 24  RRRVWYLFSLALVVLLAVGSVLRGPNLGIEFTGGSEFQIAGVSDTEQTSARDVVRDHLPG 83

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           +       G     V+ +    D  A      +           S   +T  +GP  S +
Sbjct: 84  NEPKITVLGGSTLRVQTEELDSDETA-----ALASDLAGAYDVSSDAVSTSYIGPVWSGD 138

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           + +K + GVI+    +   + + F+    +L A++ LI D+  T+G + + G E     V
Sbjct: 139 VTQKMLRGVIVFLALVAGMMALYFRNLKASLAAMSALIHDMLVTVGVYLVVGFEITPGTV 198

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSMAAFI 781
              LT++GYS+ D +VV+D++R+N          +F D ++++ N+TL RS+ TS+ A +
Sbjct: 199 IGFLTVMGYSLYDTIVVFDKVRENTAGLRRQTRTTFADEVERAANQTLVRSINTSVVALL 258

Query: 782 SVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            V  +      + G   +   ++ +  GI+    SSIF+A   L+ +    
Sbjct: 259 PVGSILAIGAFLLGAGTLKDISLALFIGIIAGTYSSIFLAPGFLVDLRRRE 309


>gi|59711482|ref|YP_204258.1| preprotein translocase subunit SecD [Vibrio fischeri ES114]
 gi|59479583|gb|AAW85370.1| protein translocase subunit SecD-like protein [Vibrio fischeri
           ES114]
          Length = 607

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 149/497 (29%), Positives = 258/497 (51%), Gaps = 31/497 (6%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITL 100
             I LGLDLRGG   +L+VD +          +D L+  L++E I    ++    + + +
Sbjct: 127 EPIKLGLDLRGGVQFLLDVDVNQVYQAQRNELADSLKQELREERIRSVRLQKVDSDTLVV 186

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
                         +                   +      ++ + L ++    V +  +
Sbjct: 187 HLPSEEASHAARQFIHKNYPTWQ-----------ITNDDGFDLKLTLKEDEKIAVRNLTV 235

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
           +Q+++ +R RI+++GI+E+ +QR G +RI I+LPG QDP+  + ++G TA ++F+ V   
Sbjct: 236 QQNLQTMRSRIEELGITEALVQRQGENRIRIELPGVQDPAAAKNVIGATASLAFYAVKEQ 295

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                       + D +G    V  K  ++G H+  A A+         V+I  D  G +
Sbjct: 296 -----GTGSTMVIPDQNGQPVRVGRKPVLTGDHIVDARASLGEMGM-AEVNIVLDSSGGK 349

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPSGKAQISGNFTIETA 328
              E +R N+GKP+A   +     +                Q+    + +I+G+ +++ +
Sbjct: 350 IMSEFSRHNVGKPMATSYNEYSRDSAGNTEQSNQIISVATIQSQLGSRFRITGSGSLQES 409

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             LA +LRAGSL   + IVEER +G  LG+++I  G  A+  GL L +LFM V Y + G 
Sbjct: 410 QELALLLRAGSLTAPVTIVEERTIGPTLGAENIQNGFAALGLGLGLTLLFMAVWYRRLGW 469

Query: 389 VADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           VA+ ++  N+++   LL+L+  A LTLP IAG+VL +G+AVD+N+L+ ERI+++ ++ ++
Sbjct: 470 VANIALIGNMVMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKQKEGRT 529

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           +  ++D GFS A+ TIFD+N T +I  VVL+  G G ++GFA+T+GL +L SMFT I   
Sbjct: 530 LAQAIDRGFSSAFGTIFDANFTTMITAVVLYTIGNGPIQGFALTLGLGLLTSMFTGIFAS 589

Query: 508 RAMMIFIIRYKKMKSID 524
           RA++  +        + 
Sbjct: 590 RAIINLVWGRDSRHDVR 606



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 92/260 (35%), Gaps = 5/260 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G       +  V        +    +            +    ++ L       G    Q
Sbjct: 348 GKIMSEFSRHNVGKPMATSYNEYSRDSAGNTEQSNQIISVATIQSQLGSRFRITGSGSLQ 407

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 +  +   +    TI     +GP +  E I+ G   + +     L+++ + ++  
Sbjct: 408 ESQELALLLRAGSLTAPVTIVEERTIGPTLGAENIQNGFAALGLGLGLTLLFMAVWYR-R 466

Query: 692 FALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               A   LI ++    G  AL  G    L  +A ++  +G +V+  V++++R++     
Sbjct: 467 LGWVANIALIGNMVMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKD---K 523

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                +    ID+  +   G     +    I+ + +   G   I  FA+ +  G++ +  
Sbjct: 524 QKEGRTLAQAIDRGFSSAFGTIFDANFTTMITAVVLYTIGNGPIQGFALTLGLGLLTSMF 583

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           + IF +  I+  ++   +++
Sbjct: 584 TGIFASRAIINLVWGRDSRH 603


>gi|316934462|ref|YP_004109444.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Rhodopseudomonas palustris DX-1]
 gi|315602176|gb|ADU44711.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris DX-1]
          Length = 1055

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/690 (10%), Positives = 180/690 (26%), Gaps = 49/690 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I      +     L    + ++P   P               + +   
Sbjct: 8   RRPIFAWVIAIVIM-----LGGLLALTTLPVSQYPEIAPPT-------------IQISAS 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      +   +        +   S    Q +IT++F +    +    +V 
Sbjct: 50  YPGADAQTVENSVTKVIEQGMTGLDNLDYMTASSTSSGQAEITITFTNKANPDVAQMQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ V + L    +   L  T      +++             + +  +     D++  
Sbjct: 110 NKLQLVTALLPSIVQTTGLSVTKSTNGFLMIVGFVSTNGKMSETDIADYVKSSLNDRLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    DP +L +   T A ++      N        G    R  
Sbjct: 170 VEGVGNTQLFGGG-YAMRIWLDPEKLLKYALTPADVTAAIQAQNTQVSAGQLGGLPARKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  +  +                 +    +   +             +      
Sbjct: 229 QQLNATVTAQSRL-------------QTPAQFRNIVVKSDTNGSMVRINDVATVELGAED 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                            +     +   T      +   +          +          
Sbjct: 276 YTSASTYNGLPATGLAINLATGANALRTAAAVKAVVNEMAPTLPQGVKVVYPYDTTPFVE 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   +  L+   ++ + ++ T  +L+L G ++   +
Sbjct: 336 ISIGDVTRTLVEAIVLVFVVMLVFLQNFRATLIPTLAVPVVLLGTFGVLALAGYSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +    + +  S   +     +     +           V
Sbjct: 396 MFAMVLAIGLLVDDAIVVVENVERVMHDEGLSPREATAKSMTEITGALIGITTVLSAVFV 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R FA+T+  ++++S+  A+ +  A+   I+R  K           F 
Sbjct: 456 PMAFFGGSVGVIYRQFAVTIVSAMVLSVIVALVLTPALCATILRPPKPHDEKRGVFGWFN 515

Query: 533 LIPDCIAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +       +         R R   +   ++    +   +         + +G + + V 
Sbjct: 516 RVLGRGTDAYQAGARGMLRRPRQGLIAFVLVIVAAAALFIRLPTSFLPEEDQGLLMVSVQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                        L+ +    +  +    +    V      G           ++     
Sbjct: 576 LPVGATTDRTERVLDKVTRHFLDHETKAVDGLMTVTGFSFSGAGQNVGMAFVRLRDFAER 635

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                +          +   +    +  + 
Sbjct: 636 KDTDLSANAVAERAMAVFGGVRDAKVFALA 665



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T G  AL G   N   + A++  IG  V+D +VV + +     
Sbjct: 363 FRATLIPTLAVPVVLLGTFGVLALAGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERV 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFG 804
           ++   +S R+   KS+ E  G  +   +   +    +PMA +GGSV      FA+ +   
Sbjct: 421 MHDEGLSPREATAKSMTEITGALI--GITTVLSAVFVPMAFFGGSVGVIYRQFAVTIVSA 478

Query: 805 IVVAASSSIFIAAPI 819
           +V++   ++ +   +
Sbjct: 479 MVLSVIVALVLTPAL 493



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 71/256 (27%), Gaps = 9/256 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +      V  N    +            G    + ++G     ++       S    
Sbjct: 778  MQPEDLDLWYVRNNAGAMVPFSAFASGRWTFGSPRLERYNGAAAVQIQGDAAASVSSGAA 837

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                                           +      + +++  + +     +   W  
Sbjct: 838  MAEIDRLVAGLPGGFGHEWTALSRQEQLSGNQAASLYAISILVVFLCLA---ALYESWSI 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + ++ + +   L    L G   ++     +LT IG +  + +++ +     +    
Sbjct: 895  PFAVMMSVPVGVFGALAAALLLGQSNDVYFKVGLLTTIGLAAKNAILIIEFA---IARQQ 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              +        +  + L   + TS A  + V P+ V    G +   S  I +  G++ A 
Sbjct: 952  AGLGLHRATLLAARQRLRPILMTSFAFILGVAPLVVASGAGSAAQNSIGIGVMGGMLAAT 1011

Query: 810  SSSIFIAAPILLFIYD 825
               IF    + + +  
Sbjct: 1012 VLGIFFVPLLFVLVRR 1027



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 60/532 (11%), Positives = 132/532 (24%), Gaps = 59/532 (11%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R     +I + ++              +      P       +           + L V
Sbjct: 533  LRRPRQGLIAFVLVIVAAAA-----LFIRLPTSFLPEEDQGLLM---------VSVQLPV 578

Query: 61   DEDDFVNGFLQMYSDELRS--------------FLKKEGIGVFSMRQIQNKITLS-FADS 105
                      +   D++                 +                + L  FA+ 
Sbjct: 579  ---GATTDRTERVLDKVTRHFLDHETKAVDGLMTVTGFSFSGAGQNVGMAFVRLRDFAER 635

Query: 106  RFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
            +  +  A+ V      V   +       L     E   +       +  +     ++ M 
Sbjct: 636  KDTDLSANAVAERAMAVFGGVRDAKVFALAPPAIEGLGTSNGFDFYLKDINGAGHDKLMA 695

Query: 166  IIRQRIDQIGISESTIQRLGSHRILIQLPGEQ-DPSRLRQLLGTTAKMSFHKVLPNNSKK 224
            +  Q +   G S        + +          D  +   L    A ++    +      
Sbjct: 696  VRDQLLGAAGKSRLLSGTRPNGQDDTPQFSIDIDQEKASALGLNLADVNSTLSIAW---- 751

Query: 225  GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
                         G+ Y+ +         +   +A       + +               
Sbjct: 752  -------------GSSYVNDFIDRGRVKRVYLQSAADFRMQPEDLDLWYVRNNAGAMVPF 798

Query: 285  VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
                +           R   A  +     +  +  SG    E   ++A +          
Sbjct: 799  SAFASGRWTFGSPRLERYNGAAAVQIQGDAAASVSSGAAMAEIDRLVAGLPGGFGHEWTA 858

Query: 345  NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
               +E+  G    S        AI   +V + L  +            S+ + V   LA 
Sbjct: 859  LSRQEQLSGNQAASLY------AISILVVFLCLAALYESWSIPFAVMMSVPVGVFGALAA 912

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
              LLG +  +    G++  IGLA  + IL+ E      +    +  +  +   +    I 
Sbjct: 913  ALLLGQSNDVYFKVGLLTTIGLAAKNAILIIEFAIARQQAGLGLHRATLLAARQRLRPIL 972

Query: 465  DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
             ++   ++    L      G  A     I +   +L +    I  V  + + 
Sbjct: 973  MTSFAFILGVAPLVVASGAGSAAQNSIGIGVMGGMLAATVLGIFFVPLLFVL 1024


>gi|315125908|ref|YP_004067911.1| acrB/acrD/acrF acriflavin resistance protein [Pseudoalteromonas sp.
           SM9913]
 gi|315014422|gb|ADT67760.1| acrB/acrD/acrF acriflavin resistance protein [Pseudoalteromonas sp.
           SM9913]
          Length = 1032

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/668 (11%), Positives = 196/668 (29%), Gaps = 41/668 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   GL+           L  +P                         
Sbjct: 9   KRPVFAIVINLLLLTFGLVA-----FSMLPLREYPDIETPIV---------NISTEYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S ++       S R  ++ IT+ F  SR  ++ ++ V   +  
Sbjct: 55  SAEIIETKITQVIENRISGIEGIKSINSSSRNGRSNITIEFNISRDIDDASNDVRERVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    +   +  +   E  I     N +     +++ S    R  +D++ + +   
Sbjct: 115 ALDSLPEQVRPPEVSKSNSDESPIAWFVLNSE--TMDSLQLSDYAQRFIVDRLAVVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +   +     T++ +       N               +     
Sbjct: 173 NVRIGGERKYAMKVWLNRQAMAARGITSSDIEQTLRSENVELPAGEIESVDRDFTVRT-- 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A            +                ++    A      
Sbjct: 231 -----------------ARSYKNQRDFQNLVIKRGEDGYLVRLGEVADVKLEAADDESLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +A+ +    ++ A      ++              +      S + 
Sbjct: 274 RGNGRNMIGMGIVKQAKANTLTVVDNARSELEKIKRNLPEGTTIEDSYDSSVFIKESINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI  GLV++++F+ +   +  L+   ++ + ++ +   L  +G ++ L ++  +V
Sbjct: 334 VYKTLAISMGLVVLIIFIFLGNIRATLIPAVTVPVALVSSFMFLLAMGYSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I       +    +   G       I  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVMLENIHRRIELGEPPLLAAYRGAREVGFAIIATTLVLISVFVPLVFME 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FA+ +  ++  S  TA+++  A+   +++  + +S     + RFF   +  
Sbjct: 454 GRIGALFTEFAMAVSAAVFFSSITALTLSPALCSKVLKASEKESKFSQVMDRFFTKLENG 513

Query: 539 AIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                     R WG+ +S++ +      LF    +     +      VL N P   S   
Sbjct: 514 YRNALASNMTRKWGLMLSLVLAGFVSYSLFLQIPSELTPKEDRGTFFVLMNGPEGASYEN 573

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +     +I +      +  +   V ++           ++ M      +      +    
Sbjct: 574 NAANMAKIEERLMPYSESGELSRVLVRVPGWGGSGGVAIVGMADWDKRKRSTWEVMDEIS 633

Query: 656 IVGPKISR 663
               +++ 
Sbjct: 634 GKMQEVTD 641



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 84/241 (34%), Gaps = 11/241 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +   +   + +N  G                     LE +K+ + E   +    ++ 
Sbjct: 265 EAADDESLFRGNGRNMIGMGIVKQAKANTLTVVDNARSELEKIKRNLPEGTTIEDSYDSS 324

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALF 714
           +   +   E+ +   + + +  + + I++  IR     A+     L+      L      
Sbjct: 325 VFIKESINEVYKTLAISMGLVVLIIFIFLGNIRATLIPAVTVPVALVSSFMFLLA----M 380

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   NL  + A++  IG  V+D +V+ + +    +             +   E     + 
Sbjct: 381 GYSINLLTLLALVLAIGLVVDDAIVMLENIH---RRIELGEPPLLAAYRGAREVGFAIIA 437

Query: 775 TSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++      +P+       G++   FA+ ++  +  ++ +++ ++  +   +     K +
Sbjct: 438 TTLVLISVFVPLVFMEGRIGALFTEFAMAVSAAVFFSSITALTLSPALCSKVLKASEKES 497

Query: 832 R 832
           +
Sbjct: 498 K 498



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIG 731
           +++     + +  +F+ +     +  L + +      F L   G+  N+ +   ++ LIG
Sbjct: 856 VLALTVTFLVLAAQFESFMHPF-VIMLTVPLGLMGAMFGLWSMGLTLNIYSQIGIVMLIG 914

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            S  + +++ +      +L    + F + I ++  + L   + TS+   +S +P+ +  G
Sbjct: 915 LSAKNGILIVEF---TNQLRDKGVEFSEAILQAATQRLRPIIMTSLTTVMSAVPLVLASG 971

Query: 792 S 792
            
Sbjct: 972 P 972


>gi|225677136|ref|ZP_03788135.1| Preprotein translocase, SecD subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590803|gb|EEH12031.1| Preprotein translocase, SecD subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 501

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 186/518 (35%), Positives = 298/518 (57%), Gaps = 26/518 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                      IC   L I LPNF    +       + K RI+LGLDL+GG+ L+L +D 
Sbjct: 4   RLIVKSFSVLCICLFALYITLPNFFDNKL------FISKKRINLGLDLKGGASLLLNIDL 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           D +    L M ++E++  L  + I   +++       ++  +    +  +  +       
Sbjct: 58  DFYFKEKLSMLANEIKETLLTKDI-ESNVQNS----VITLNNIDDYKKASVLIN------ 106

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                     NL +   +  I I    +  + +IS    +S+  +++R+D++G  E ++Q
Sbjct: 107 ------AINPNLELNRKDSSILISYKPHYKNSLISEVAAESINNVQRRLDKLGTKEVSVQ 160

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM--FGVRFLRDSDGNQ 240
           + G ++IL+Q+PG +D  +++ LLG TAK++FH    N +K   +       L+DS GN 
Sbjct: 161 KQGQNKILVQVPGVEDTKQIKSLLGKTAKLAFHLANTNIAKVQDIDHETTVMLKDSLGNS 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +  K EI G  L  A+  F     KP V   FD + ++RF ++T++N+GKP A+VLD 
Sbjct: 221 YPIFRKTEIGGDSLVNASVRFG-HLGKPTVHFKFDSIASKRFAKITKENVGKPFAIVLDN 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            VLT P I + I +G+ +ISGNFT + A  LA +L++G+LP  L I+EE+N+G  LG +S
Sbjct: 280 TVLTVPTIREPILNGEGEISGNFTEKQASELAILLKSGALPAPLKIIEEKNIGPSLGEES 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  A    ++ + LF+I+ YGK G++A  ++F NV+L L++L+LL ATLTLP IAGI
Sbjct: 340 IKAGEMAATISIIAVALFIIITYGKLGVLASVALFSNVVLILSILTLLEATLTLPGIAGI 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+AVD+N+L+ ERIREE +  + V  +++ GF  A  TI DSNIT LIA  ++F  
Sbjct: 400 ALTVGMAVDANVLIFERIREEIKSGKRVERAIEEGFKNAIKTILDSNITTLIAAGIMFII 459

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           G GA+RGF++T+ + IL SMF+AI++ + ++   +  K
Sbjct: 460 GSGAIRGFSVTLSIGILCSMFSAITVTKLLIELCMNPK 497



 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  E I+ G +   IS IA+ ++I I +     + A   L  ++   L    L    
Sbjct: 332 GPSLGEESIKAGEMAATISIIAVALFIIITYG-KLGVLASVALFSNVVLILSILTLLEAT 390

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A +   +G +V+  V++++R+R+ +K           I++     +   + +++
Sbjct: 391 LTLPGIAGIALTVGMAVDANVLIFERIREEIKSGKR---VERAIEEGFKNAIKTILDSNI 447

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              I+   M + G   I  F++ ++ GI+ +  S+I + 
Sbjct: 448 TTLIAAGIMFIIGSGAIRGFSVTLSIGILCSMFSAITVT 486


>gi|160901172|ref|YP_001566754.1| hydrophobe/amphiphile efflux-1 family protein [Delftia acidovorans
           SPH-1]
 gi|160366756|gb|ABX38369.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Delftia
           acidovorans SPH-1]
          Length = 1046

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 69/604 (11%), Positives = 174/604 (28%), Gaps = 44/604 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G+L       PQ  + R+P+  P              +       
Sbjct: 8   RPVFAWVIALFIVLLGVLAI-----PQLPISRYPTVAPPTV---------SLYATYPGAT 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +N  +    +   S ++       S+    + +I  +F      E     V   ++ 
Sbjct: 54  PKTLNDSVVSLIERELSSVRHLLYFESSVDTSGSAEIKATFKPGTNPELAQVDVQNRIKA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    ++N L   +     ++L            +  +  + R  ++++   E   
Sbjct: 114 VEPRLPQAVRQNGLQVESATSSFLLLVGLISPGGEFDELALNDYMARNIVEELRRIEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP++L     +   ++      N        G   +        
Sbjct: 174 RVQLFGT-ERAMRVWVDPAKLISYGLSMGDLTQAIQQQNMQIAPGRVGDAPIAPGQRVTT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++                +    +        R        +           
Sbjct: 233 PLTVQGQLT-------------SPEQFAAIVLRANADGSRLVLGDVARVELGAQSYAFSN 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +   T        A L +       + +          S   
Sbjct: 280 REDGKPATSAAVQLSPGANAVRTAAAVQKRMAELASILPRGMEHTISFNTAPFVKISIEK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+      + ++ T A++ + G ++ + ++ G+V
Sbjct: 340 VVQTLVEAMVLVFLVMYLFLQNLRYTLIPAIVAPVALLGTFAVMLVAGFSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +           I    +      + + F 
Sbjct: 400 LAIGIIVDDAIVVVENVERLMAEEGLSPRDATLKAMKEITGAIIGITLVLTAVFIPMAFA 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----------KKMKSIDIN 526
            G      + F ++M +SIL S F A+S+  A+   +++                +    
Sbjct: 460 SGSVGVIYQQFTLSMAVSILFSAFLALSLTPALCATLLKPVAAGHHEKKGFFGWFNRGFE 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            L+  +       ++            +   + ++  L +  L           + + A+
Sbjct: 520 RLTNRYEAHVTGLVRRTGRMMLLFAAIVAILVFALRQLPSAFLPEEDQGYFMASIQLPAD 579

Query: 587 RPVD 590
              +
Sbjct: 580 ATAE 583



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 84/241 (34%), Gaps = 14/241 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q    S +                 ++V     ++    ++  I+P     
Sbjct: 264 DVARVELGAQSYAFSNREDGKPATSAAVQLSPGANAVRTAAAVQKRMAELASILPRGMEH 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILDITKT 707
                     +  I K +  ++ + + + + +++     R+    A+ A   L      T
Sbjct: 324 TISFNTAPFVKISIEKVVQTLVEAMVLVFLVMYLFLQNLRYTLIPAIVAPVAL----LGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N+  +  ++  IG  V+D +VV + +     +    +S RD   K++ E
Sbjct: 380 FAVMLVAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAEEGLSPRDATLKAMKE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA   GSV      F + MA  I+ +A  ++ +   +   + 
Sbjct: 438 ITGAIIGITLVLTAVFIPMAFASGSVGVIYQQFTLSMAVSILFSAFLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 60/146 (41%), Gaps = 7/146 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L +   +    L G+  ++     +
Sbjct: 865  QAPLLMALSMLVVFLVLAALYESWSIPLSVMLVVPLGLLGAVAAVLLRGMPNDVFFKVGL 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L       R+   K+    L   + TS+A  + V+P+
Sbjct: 925  ITIIGLSAKNAILIVEFAK---QLREEGQDLREAAIKAARLRLRPILMTSLAFALGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAA 809
             +  G       +    +  G+V   
Sbjct: 982  MLASGASAETQHAIGTGVFGGMVSGT 1007


>gi|237807129|ref|YP_002891569.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Tolumonas auensis DSM 9187]
 gi|237499390|gb|ACQ91983.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Tolumonas auensis DSM 9187]
          Length = 1048

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/588 (10%), Positives = 160/588 (27%), Gaps = 38/588 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           ++++P+  P +                    
Sbjct: 8   RPIFAWVIAIVIMLAGALAI-----KSLPIEQYPTIAPPSVR---------ISTSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              N  ++LSF      +    +V   +Q 
Sbjct: 54  AQTVEDSVTQVLEQNMTGIDNLLYMSSQSDSSGNVTVSLSFLAGTNADTAQVQVQNKVQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L    +   +      E  ++++    +       + S  ++    + +   +   
Sbjct: 114 ALSSLPQTVQDQGVRVEKSTESFLMVAGLISENGEMDQSDISDYMVTNIKEPLSRIKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   ++      N        G            
Sbjct: 174 TVQIFGSQ-YAMRVWLDPNKLNSFNLTPGDVTSAITSQNTQISVGQLGATPAVAGQQFNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 TITGQGRLT-------------SMDEFKNILLKVNTNGSQVRLRDVARVELGAESYNAVS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       +  +   T E      A L          +           S S 
Sbjct: 280 RYNGKPASGIAIRLASNANALDTAELVKAKMADLSKYFPTGLKVVYPFDTTTFVKISISE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  ++++ +   +  L+   ++ + ++ T  ++S+ G T+   ++ G+V
Sbjct: 340 VAQTLVEAVILVFFIMYLFLQNFRATLIPTIAVPVVLLGTFGIMSVFGYTINTLTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +    + +  S   +      +     I  + + + +   + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEEGLSPLEATRKSMDQITGALIGIALVLSAVFVPMAFF 459

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F++T+  ++ +S+  A+ +  A+         +K +              
Sbjct: 460 SGSTGAIYRQFSLTIVSAMALSVVVALILTPALCAT-----MLKPVPKGDHGIQTGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
               F R               S  +L  + +          ++    
Sbjct: 515 FNHMFERNSRRYRNTVGRILQRSGRMLVIYVVLLLGLVWLFTRMPTSF 562



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +      + +        +++    +++     +++  
Sbjct: 258 SQVRLRDVARVELGAESYNAVSRYNGKPASGIAIRLASNANALDTAELVKAKMADLSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I +    ++ + I +   +++  + +   L     + + + 
Sbjct: 318 PTGLKVVYPFDTTTFVKISISEVAQTLVEAVILVFFIMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  ++FG   N   +  ++  IG  V+D +VV + +     +    +S  +   KS+
Sbjct: 378 GTFGIMSVFGYTINTLTMFGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPLEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  +  ++      +PMA + GS       F++ +   + ++   ++ +   +
Sbjct: 436 DQITGALIGIALVLSAVFVPMAFFSGSTGAIYRQFSLTIVSAMALSVVVALILTPAL 492



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/252 (10%), Positives = 82/252 (32%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V   +   +        +   G    + ++G     +  +   G +  +           
Sbjct: 789  VRNAQEQMVPFSAFAEGNWSYGSPRLERYNGSSAIDIVGEAAEGYTTGEAMATMTRLISQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                             +   +      + +++  + +     +   W      +  + L
Sbjct: 849  LPEGIGFEWTGLSYQEQESGSQAPALYAISLLVVFLCLA---ALYESWTIPFSVMLIVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    L G+  ++     +LT IG +  + +++ +  ++   L+   +  +  + 
Sbjct: 906  GVVGALAAATLRGLSNDIFFQVGLLTTIGLAAKNAILIVEFAKE---LFDKGMGIKQAVI 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + V P+ +    G S   +    +  G++ A   +IF     
Sbjct: 963  EASRMRLRPILMTSLAFILGVFPLVISSGAGASGRHAIGTGVTGGMIAATVLAIFYVPSF 1022

Query: 820  LLFIYDWRAKNA 831
             + +  + +K+ 
Sbjct: 1023 FVLVMKYFSKHR 1034


>gi|28198688|ref|NP_779002.1| multidrug-efflux transporter [Xylella fastidiosa Temecula1]
 gi|182681379|ref|YP_001829539.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Xylella
           fastidiosa M23]
 gi|28056779|gb|AAO28651.1| multidrug-efflux transporter [Xylella fastidiosa Temecula1]
 gi|182631489|gb|ACB92265.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Xylella
           fastidiosa M23]
          Length = 1055

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 67/613 (10%), Positives = 157/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++           ++ +PS  P               + +     
Sbjct: 9   PIFAWVVAILISLAGVISIF-----NLGVESYPSIAPP-------------QVTITAHYP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                 L+      +   L            S    Q  ITL+F      +    +V   
Sbjct: 51  GASADTLEKSVTQVIEQQLTGIDHLLYFSSSSASNGQATITLTFESGTNPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D         +  +    ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPAFDKDALNDFVGTHVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    + +++       N        G      +  
Sbjct: 171 GVGSTNQFGAQ-YAMNIWLNPEKLQGYHLSASQVYNAISTQNVQFAAGSIGADPAPANQS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K   +                +    I                 +        
Sbjct: 230 FTTTVTTKGRFT-------------TPEQFENIILRTNNDGSTVRLKDVARVKIGAESYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +    +E+       L++             +      S
Sbjct: 277 IDSQYNGKPAGAFGVQLLPGANALQVVESIHTKMDELQSTFPQGVTWFTPYESTTFIKIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T A    LV +V+ + +   +  ++    I + ++ T A +  +G T+   ++ 
Sbjct: 337 IKEVVKTLAEAIVLVFLVMLIFLQNFRATIIPTLVIPVALLGTFAGMLAIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMTEEHLEPKAATQKAMTQITGAVIAISIVLTAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A++   A+            +    ++ +   
Sbjct: 457 AMQPGAAGAIYKQFALTIAMSMGFSAFLALTFTPALCASFLKSSHGQNKNWIFRTFEKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     I+    R   W    ++L  +C              + +G     V    
Sbjct: 517 EKLSHRYVRLISNTLKRTPRWTAFFAVLVVLCGFLFTRMPSSFLPEEDQGFALAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
               +        
Sbjct: 577 GATKTRTNEVFTQ 589



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 79/248 (31%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   I  Q                 +++     +     ++    P 
Sbjct: 260 VRLKDVARVKIGAESYGIDSQYNGKPAGAFGVQLLPGANALQVVESIHTKMDELQSTFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                T        +  I++ +  +  + + + + + I  + +   +     + + +  T
Sbjct: 320 GVTWFTPYESTTFIKISIKEVVKTLAEAIVLVFLVMLIFLQNFRATIIPTLVIPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +  +    K++ +
Sbjct: 380 FAGMLAIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERIMTEEHLEPKAATQKAMTQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  S+      +P A+     G++   FA+ +A  +  +A  ++     +     
Sbjct: 438 ITGAVIAISIVLTAVFIPSAMQPGAAGAIYKQFALTIAMSMGFSAFLALTFTPALCASFL 497

Query: 825 DWRAKNAR 832
                  +
Sbjct: 498 KSSHGQNK 505



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + I  T+ F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLLIVPIGILGTIVFSMLRGLPNDLYFKIGLITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----------GGSV 793
               +    T  + R+    +        + TS+A  + VLP+A+            G  V
Sbjct: 949  ---VAQRATGKTLREATIDAARLRFRPILMTSLAFILGVLPLAISSGAGANARHSIGTGV 1005

Query: 794  IGSFAIPMAFGIVV 807
            IG       FG++ 
Sbjct: 1006 IGGMTFATIFGVIF 1019



 Score = 41.6 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 45/527 (8%), Positives = 133/527 (25%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R   W      ++   G L        +      P              +G +  ++++ 
Sbjct: 533  RTPRWTAFFAVLVVLCGFL------FTRMPSSFLPEED-----------QGFALAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS--------------RF 107
                          ++R+ L+K       M+        S  +                 
Sbjct: 575  PPGATKTRTNEVFTQMRAVLEKIPSIEGLMQITGFSFVGSGENVGMGFIRLKPWQERQET 634

Query: 108  KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
             + +  ++     G+            +    +     +  Q+          +    ++
Sbjct: 635  ADQLIQQLNGMFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRNGLGHEALTQARNVVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +   +  +  +       +   +QL    D  +   +  +T+ +               
Sbjct: 695  GKAAQRQDVMVAVRPNGLENSPQLQLT--VDRVQGESMGLSTSDIYKAIQ---------- 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              +     +D        +V +    +   + +     + P    +              
Sbjct: 743  LMLAPTYVNDYFSEGRIKRVNMRADDMYRTSPDSLRNFYTPSSSATDVNGQPLMIPLSNV 802

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                   A     R      IN           G  + +   +LA+++            
Sbjct: 803  VKADWIYAAPSLDRYNGYSAINIV----GNTAPGTSSGQAMKVLASIVNDDLPHGFGIDW 858

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
               +    +  ++        V  + L +  +        +     + + ++ T+    L
Sbjct: 859  SGMSYQEIIAGNAATLLLVLSVVVVFLCLSALYE-SWSIPVAVLLIVPIGILGTIVFSML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G    L    G++  IGLA  + IL+ E    +    +++  +        +  I  ++
Sbjct: 918  RGLPNDLYFKIGLITVIGLAAKNAILIVEFAVAQRATGKTLREATIDAARLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +  ++  + L      G  A       +   +  +    +  +  + 
Sbjct: 978  LAFILGVLPLAISSGAGANARHSIGTGVIGGMTFATIFGVIFIPLLF 1024


>gi|84386227|ref|ZP_00989256.1| putative protein-export membrane protein SecF [Vibrio splendidus
           12B01]
 gi|84378997|gb|EAP95851.1| putative protein-export membrane protein SecF [Vibrio splendidus
           12B01]
          Length = 312

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 150/300 (50%), Gaps = 7/300 (2%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           ++                 R R     ISI+  + S+ L+   G N+G+DF GG+   V 
Sbjct: 1   MSTSKMTISDRYFSNSNMTRLRKVMSVISIVLFMSSVMLVAVKGFNWGLDFTGGVVAEVQ 60

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +  V    +++ L++    D+       +  + +R       S         +   ++ 
Sbjct: 61  LSDQVTKDALKTKLDTAFQQDVQVVGMAEQDRWTIRY------SQLTDAPQPNLVDALSS 114

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           +     + N+ +VGP++ ++++ +G + V++  + +++Y+ +RF+W  ALGA+  +I D+
Sbjct: 115 VSDQVKVLNSSVVGPQVGQDMVDQGGLAVLVCFLMIMLYLSVRFEWRLALGALAAIIYDV 174

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           T  LG FA    EFNLT +AAVL ++GYS+ND +++ DR+R+ ++         +L+++S
Sbjct: 175 TLILGLFAFTQFEFNLTVLAAVLAILGYSLNDSIIIADRVREMLRGNPNG-DTDNLLNES 233

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +  T  R++ TS    I+V  + + GG+ +  FAI +  GIV    SS+ +   +   + 
Sbjct: 234 VKATFSRTMVTSGTTLITVSALWLLGGAALQGFAIALVVGIVSGTWSSVSVGITLPKLLG 293


>gi|91976784|ref|YP_569443.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB5]
 gi|91683240|gb|ABE39542.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB5]
          Length = 1062

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 75/600 (12%), Positives = 174/600 (29%), Gaps = 44/600 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L +++   G +        +  L  +PS  P               + +    
Sbjct: 10  RPIFAIVLSALMLIAGAIALF-----RLSLSEYPSITPPT-------------VQVTASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  L   +   EG+   S +   +    +T++FA     +    +V  
Sbjct: 52  PGANPQVIAETVASPLEQSVNGVEGMLYMSSQAATDGRMTLTVTFAQGTDADIAQIQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +VT       +++            +  S     Q  D +   
Sbjct: 112 RVSRALPRLPEEVQRIGVVTQKTSPDILMVVHLVSPGKRYDPLYISNYATLQIRDTLARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP+++     T   +       N        G +   ++ 
Sbjct: 172 PGIGDVVVWGAGEYAMRVWLDPAKVAARGLTAGDVVTAIREQNVQVAAGSVGQQP-SEAA 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V  +  +S                +    +       +         +G      
Sbjct: 231 SYQVTVSTQGRLSSEE-------------QFGEIVIKTGDDGQIVRLRDVARVGLGADAY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L            +   +              LR          +          
Sbjct: 278 ALRSLLNGDPAVAMQIIQRPGANALDVSNAVHAEMERLRQDFPEGLEYRIAYDPTVFVRA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV++V+ + +   +  ++   ++ ++++ TLA++ LLG +L   S+
Sbjct: 338 SLAAVMMTLLEAIVLVVVVVVLFLQTWRASIIPLVAVPVSLVGTLAVMYLLGFSLNTLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV- 476
            G+VL IG+ VD  I+V E +       ++   +         + I           +  
Sbjct: 398 FGLVLSIGIVVDDAIVVVENVERHIGLGETPKEAARKAMDEVTAPIIAITSVLAAVFIPS 457

Query: 477 --LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSR 530
             L    G   R FA+T+ +S ++S   ++++  A+   +            +       
Sbjct: 458 AFLSGLMGEFYRQFAVTIAISTVLSAINSLTLSPALAGMLLKSHHAESNRDWLTRGIDFA 517

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                      F RA    VG +      S  +L  +    G+ + G   +        D
Sbjct: 518 LGWFFRLFNRFFDRASSAYVGAARGAIRISGVILILYAALVGMTWVGFQSIPTGFVPAQD 577



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/235 (11%), Positives = 71/235 (30%), Gaps = 12/235 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + + +    D            +         S   T  +E +  +      +    +  
Sbjct: 813  ATVVTSSGPDRVMHYNGYPSVDITGGPAPGYSSGQATAAIERIVVETLPDGMMFEWTDLT 872

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +     +    + V+++    LI       W      +    L +   +    L  
Sbjct: 873  FQEKQAGNTAMIVFPLAVLLAF---LILAAQYNSWSLPFTVLLIAPLALLSAIIGVWLSN 929

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDR-MRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             + N+    A + L+G +  + +++ +   ++              + +S    L   + 
Sbjct: 930  GDNNIFTQIAFVVLVGLAAKNAILIVEFAYKEE----KDGREPLAAVLESARLRLRPILM 985

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            TS+A    V+P+ +    G  +  +  I +  G++      + I  P+   +   
Sbjct: 986  TSLAFIAGVVPLVMATGAGAEMRHAMGIAVFAGMLGVTFFGL-ILTPVFYVVIRR 1039



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  TL    L G   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTLAVMYLLGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRSV-YTS-M-AAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
                 + ++   K+++E     +  TS + A FI    ++   G     FA+ +A   V
Sbjct: 421 HIGLGETPKEAARKAMDEVTAPIIAITSVLAAVFIPSAFLSGLMGEFYRQFAVTIAISTV 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAGMLLK 499


>gi|94310642|ref|YP_583852.1| hydrophobe/amphiphile efflux-1 HAE1 [Cupriavidus metallidurans
           CH34]
 gi|93354494|gb|ABF08583.1| multidrug efflux system protein [Cupriavidus metallidurans CH34]
          Length = 1063

 Score =  181 bits (459), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/540 (11%), Positives = 135/540 (25%), Gaps = 39/540 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+  +        + +FP   P                      
Sbjct: 10  RPIFASVLSIIIVVGGLVAMV-----NLPIAQFPDITPPTITVT-------------TTY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
               +  + Q  +  +   +        +   S       +T+ F            V  
Sbjct: 52  PGASSDVVAQNVAAPIEQQVNGADNMLYMSSTSSSTGNMTLTVYFEIGTDPSLAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L     K  +         +++                       +D +   
Sbjct: 112 RVNLALPTLPDAVTKQGVSVQKRSSAFMMVIAVYSPDNSYPQTFVDNFTNIYILDALKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ QL  T   +       N        G        
Sbjct: 172 PGANQASIFGTPDYAMRIWLKPDRMAQLGITVEDIKNAVANQNEQFSAGRIGQSPTDGPV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  K  ++                   + +      A                  
Sbjct: 232 TLTFPVTTKGRMT------------EPAEFENIILRAASGDAALVRLKDVGRAELGSKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     E        ++    P     V          
Sbjct: 280 SLRSRYKGKTATLLAVYQQPGANALAVAEQVRKTLEEVKKSFPPGMEYEVALDTTEFVHE 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV++V+F+ +   +  LV   ++ +++I T   +S  G ++ + ++
Sbjct: 340 SINEVVHTLRDAVILVILVVFLFLQSFRATLVPILAVPVSIIGTFMAMSAFGFSVNMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473
            G+VL IG+ VD  I+V E +             +              I    +   I 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMVEFKMPPKEAAKHAMDEVGGPVIAIVLVLLAVFIP 459

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   + FAIT+ +S+L+S   A+++  A+   +++    +            
Sbjct: 460 VAFLSGITGQLYKQFAITLAVSVLLSGVVALTLSPALAAILLKPGSHEKNRFFRWFNRSF 519



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 81/200 (40%), Gaps = 8/200 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + LE VKK     +      +T     +   E++      VI+  + + +++    
Sbjct: 308 EQVRKTLEEVKKSFPPGMEYEVALDTTEFVHESINEVVHTLRDAVILVILVVFLFLQ--- 364

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L  I  + + I  T    + FG   N+  +  ++  IG  V+D +VV + + +NM
Sbjct: 365 SFRATLVPILAVPVSIIGTFMAMSAFGFSVNMLTLFGMVLAIGIVVDDAIVVIENVERNM 424

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
             +   +  ++    +++E  G  +   +      +P+A      G +   FAI +A  +
Sbjct: 425 VEF--KMPPKEAAKHAMDEVGGPVIAIVLVLLAVFIPVAFLSGITGQLYKQFAITLAVSV 482

Query: 806 VVAASSSIFIAAPILLFIYD 825
           +++   ++ ++  +   +  
Sbjct: 483 LLSGVVALTLSPALAAILLK 502



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 63/168 (37%), Gaps = 6/168 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               +    + + + + +  +++ W   LG +  +   +   L    L G+E ++     +
Sbjct: 870  TAALVFAFALLMVFLILAAQYEKWSLPLGVLLAVPFALFGALMGILLRGMENDVYFQIGL 929

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
              LI  +  + +++++   +        +S  +   K+    L   + TS+A  +  +P+
Sbjct: 930  TVLIALAAKNAILIFEFAVE--MQEKEGLSPFEAAVKAAKMRLRPIIMTSLAFILGCVPL 987

Query: 787  AVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A+  G+      S    +  G++ A   +IF        +     K  
Sbjct: 988  AIASGASAASRQSLGTGVIGGMLGATVIAIFFIPMFFWGLEQRSEKRK 1035


>gi|92113077|ref|YP_573005.1| hydrophobe/amphiphile efflux-1 HAE1 [Chromohalobacter salexigens
           DSM 3043]
 gi|91796167|gb|ABE58306.1| Hydrophobe/amphiphile efflux-1 HAE1 [Chromohalobacter salexigens
           DSM 3043]
          Length = 1066

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 69/553 (12%), Positives = 162/553 (29%), Gaps = 33/553 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I  IG +      +    ++++PS +P                     
Sbjct: 9   KRPVFATVISIIIAVIGFMA-----MRVLPIEQYPSVVPPTV---------SVQATYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             + V+  +     E  + ++       +     + ++ +SF      +     V   +Q
Sbjct: 55  NAETVSKTVAAPIAEAINGVEDMIYMTSTSADNGSMRMNVSFDIGSDGDINTINVNNRVQ 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L    +   +         ++L          + I          ++++      
Sbjct: 115 QALSQLPESVQSQGVTVELSSSSILMLVALTSPTGEYNNIYMQNYATLNILNELRQVPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    +P +L Q   T+A+++      N              D     
Sbjct: 175 GEAEVLGGGEFAMRIWLNPDKLAQYDMTSAEVASAIRSQNTEVPAGSLAQAPQDDPRAYT 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +     ++                +    I                 +    +     
Sbjct: 235 YTITAPGRLADAD-------------QFRDIILRTNSDGSSLRLSDVARVELGASSYSVN 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +    +   I + +   +   T E        L     P     V          S  
Sbjct: 282 ANMNGATMTPIIINQQPGANALETAEAVKSKMDELSERFPPGLKYEVPYDTTLFIDASVE 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      +V +++F+ +   +  ++A   + ++V+ T A L L G ++ L S+  +
Sbjct: 342 SVFHTFIEALLIVAVIVFIFLQNWRTTIIAMSVVPVSVVGTFAGLYLFGFSINLLSLFAM 401

Query: 421 VLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           VL IG+ VD  ILV E +    E   +  +  +           +  ++       + + 
Sbjct: 402 VLAIGIVVDDAILVVENVERLLEEDPDIPIRKAAITAMKEVSGPVIATSFIMAAVFIPVA 461

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F G   G   + FA+T+ +S+ IS   A++   AM    +++K          +      
Sbjct: 462 FLGGFTGQIYQQFALTIAISVAISAVVALTFTPAMSALFVKHKAQLGNSRLARAASTPFR 521

Query: 536 DCIAIQFMRARFW 548
                     R +
Sbjct: 522 LFDRFFEWVTRGY 534



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 88/241 (36%), Gaps = 5/241 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           LS V           ++          ++  Q    +++     ++    +++E  P   
Sbjct: 265 LSDVARVELGASSYSVNANMNGATMTPIIINQQPGANALETAEAVKSKMDELSERFPPGL 324

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
                          +       I + + + + ++I  + W   + A++ + + +  T  
Sbjct: 325 KYEVPYDTTLFIDASVESVFHTFIEALLIVAVIVFIFLQNWRTTIIAMSVVPVSVVGTFA 384

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              LFG   NL ++ A++  IG  V+D ++V + + + +      I  R     ++ E  
Sbjct: 385 GLYLFGFSINLLSLFAMVLAIGIVVDDAILVVENV-ERLLEEDPDIPIRKAAITAMKEVS 443

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  + TS       +P+A  G   G +   FA+ +A  + ++A  ++     +       
Sbjct: 444 GPVIATSFIMAAVFIPVAFLGGFTGQIYQQFALTIAISVAISAVVALTFTPAMSALFVKH 503

Query: 827 R 827
           +
Sbjct: 504 K 504



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 68/184 (36%), Gaps = 7/184 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
               +++ +    +                     + +    + + + +  +++ W   L 
Sbjct: 845  AAMQEVVQQQLGNEWGMGWTGTSFQEANAGNAATIAITFGILMVFLILAAQYESWALPLA 904

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             IT +      ++G   L G++ ++     +L ++G +  + +++ +     ++      
Sbjct: 905  VITAVPFAFIGSIGGVVLRGLDTSVYVQVGMLVVVGLAAKNAILIVE--FAELQRREYGK 962

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIV-VAASS 811
            S RD    +        V TS+A     LP+A+  G+           +A G+V VA  +
Sbjct: 963  SIRDAAITASELRFRPIVMTSLAFIFGTLPLAIASGANDTNSHHIGTTVAMGMVSVAVLA 1022

Query: 812  SIFI 815
            S F+
Sbjct: 1023 SFFV 1026


>gi|71276636|ref|ZP_00652908.1| Hydrophobe/amphiphile efflux-1 HAE1 [Xylella fastidiosa Dixon]
 gi|71900045|ref|ZP_00682189.1| Hydrophobe/amphiphile efflux-1 HAE1 [Xylella fastidiosa Ann-1]
 gi|170730106|ref|YP_001775539.1| multidrug-efflux transporter [Xylella fastidiosa M12]
 gi|71162563|gb|EAO12293.1| Hydrophobe/amphiphile efflux-1 HAE1 [Xylella fastidiosa Dixon]
 gi|71730188|gb|EAO32275.1| Hydrophobe/amphiphile efflux-1 HAE1 [Xylella fastidiosa Ann-1]
 gi|167964899|gb|ACA11909.1| multidrug-efflux transporter [Xylella fastidiosa M12]
          Length = 1055

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 67/613 (10%), Positives = 157/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++           ++ +PS  P               + +     
Sbjct: 9   PIFAWVVAILISLAGVISIF-----NLGVESYPSIAPP-------------QVTITAHYP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                 L+      +   L            S    Q  ITL+F      +    +V   
Sbjct: 51  GASADTLEKSVTQVIEQQLTGIDHLLYFSSSSASNGQATITLTFESGTNPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D         +  +    ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPAFDRDALNDFVGTHVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    + +++       N        G      +  
Sbjct: 171 GVGSTNQFGAQ-YAMNIWLNPEKLQGYHLSASQVYNAISTQNVQFAAGSIGADPAPANQS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K   +                +    I                 +        
Sbjct: 230 FTTTVTTKGRFT-------------TPEQFENIILRTNNDGSTVRLKDVARVKIGAESYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +    +E+       L++             +      S
Sbjct: 277 IDSQYNGKPAGAFGVQLLPGANALQVVESIHTKMDELQSTFPQGVTWFTPYESTTFIKIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T A    LV +V+ + +   +  ++    I + ++ T A +  +G T+   ++ 
Sbjct: 337 IKEVVKTLAEAIVLVFLVMLIFLQNFRATIIPTLVIPVALLGTFAGMLAIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMTEEHLEPKAATQKAMTQITGAVIAISIVLTAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A++   A+            +    ++ +   
Sbjct: 457 AMQPGAAGAIYKQFALTIAMSMGFSAFLALTFTPALCASFLKSSHGQNKNWIFRTFEKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     I+    R   W    ++L  +C              + +G     V    
Sbjct: 517 EKLSHRYVRLISNTLKRTPRWTAFFAVLVVLCGFLFTRMPSSFLPEEDQGFALAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
               +        
Sbjct: 577 GATKTRTNEVFTQ 589



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 79/248 (31%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   I  Q                 +++     +     ++    P 
Sbjct: 260 VRLKDVARVKIGAESYGIDSQYNGKPAGAFGVQLLPGANALQVVESIHTKMDELQSTFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                T        +  I++ +  +  + + + + + I  + +   +     + + +  T
Sbjct: 320 GVTWFTPYESTTFIKISIKEVVKTLAEAIVLVFLVMLIFLQNFRATIIPTLVIPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +  +    K++ +
Sbjct: 380 FAGMLAIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERIMTEEHLEPKAATQKAMTQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  S+      +P A+     G++   FA+ +A  +  +A  ++     +     
Sbjct: 438 ITGAVIAISIVLTAVFIPSAMQPGAAGAIYKQFALTIAMSMGFSAFLALTFTPALCASFL 497

Query: 825 DWRAKNAR 832
                  +
Sbjct: 498 KSSHGQNK 505



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + I  T+ F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLLIVPIGILGTIVFSMLRGLPNDLYFKIGLITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----------GGSV 793
               +    T  + R+    +        + TS+A  + VLP+A+            G  V
Sbjct: 949  ---VAQRATGKTLREATIDAARLRFRPILMTSLAFILGVLPLAISSGAGANARHSIGTGV 1005

Query: 794  IGSFAIPMAFGIVV 807
            IG       FG++ 
Sbjct: 1006 IGGMTFATIFGVIF 1019



 Score = 43.5 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 45/527 (8%), Positives = 132/527 (25%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R   W      ++   G L        +      P              +G +  ++++ 
Sbjct: 533  RTPRWTAFFAVLVVLCGFL------FTRMPSSFLPEED-----------QGFALAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS--------------RF 107
                          ++R+ L+K       M+        S  +                 
Sbjct: 575  PPGATKTRTNEVFTQMRAVLEKIPSIEGLMQITGFSFVGSGENVGMGFIRLKPWQERQET 634

Query: 108  KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
             + +  ++     G+            +    +     +  Q+          +    ++
Sbjct: 635  ADQLIQQLNGMFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRNGLGHEALTQARNVVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +   +  +          +   +QL    D  +   +  +T+ +               
Sbjct: 695  GKAAQRQDVMVGVRPNGLENSPQLQLT--VDRVQGESMGLSTSDIYKAIQ---------- 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              +     +D        +V +    +   + +     + P    +              
Sbjct: 743  LMLAPTYVNDYFSEGRIKRVNMRADDMYRTSPDSLRNFYTPSSSATDVNGQPLMIPLSNV 802

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                   A     R      IN           G  + +   +LA+++            
Sbjct: 803  VKADWIYAAPSLNRYNGYSAINIV----GNTAPGTSSGQAMKVLASIVNDDLPHGFGIDW 858

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
               +    +  ++        V  + L +  +        +     + + ++ T+    L
Sbjct: 859  SGMSYQEIIAGNAATLLLVLSVIVVFLCLSALYE-SWSIPVAVLLIVPIGILGTIVFSML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G    L    G++  IGLA  + IL+ E    +    +++  +        +  I  ++
Sbjct: 918  RGLPNDLYFKIGLITVIGLAAKNAILIVEFAVAQRATGKTLREATIDAARLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +  ++  + L      G  A       +   +  +    +  +  + 
Sbjct: 978  LAFILGVLPLAISSGAGANARHSIGTGVIGGMTFATIFGVIFIPLLF 1024


>gi|332663900|ref|YP_004446688.1| acriflavin resistance protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332332714|gb|AEE49815.1| acriflavin resistance protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 1024

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 76/612 (12%), Positives = 178/612 (29%), Gaps = 42/612 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G +           L  +PS  P                      
Sbjct: 10  RPVMATVISIVIVLFGYI-----GFRSLGLREYPSVDPPIV---------SVSTSYTGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +E  + +        +    ++ I + F      E  A+ V   +   
Sbjct: 56  ADVIESQITEPLEESINGIAGIRSLSSTCSDGRSNIRVEFELGIDLEAAANDVREKVSQA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D    ++  +      I+     +     + ++ S        ++I        
Sbjct: 116 QRLLPPDADPPIVAKSDANSNPIM--SITVQSNRRNLMQLSEFANNVMKERIQTIPGISN 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  + DP++L     T   +       N               +   +  
Sbjct: 174 IRIWGEKRYAIRIKMDPTKLTAYSLTPLDVRNALQRQNLELPSGRIEGYRTELTIRTEGR 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                       +    +  +  GA        D   +        R 
Sbjct: 234 L-------------------FTPEEFSNIVLREAAGATILLSDVADVDLEAQNTRSILRG 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +     +     +     +        ++       +         +   + +  
Sbjct: 275 NNVIPMVGVAITPLPGANYIDIADRVYDRVNEIKKDLPKDIILDYAFDGTTSIRKAITEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV++V+F+ +   +  L+   +I ++++    ++ +   ++ + ++ GIVL
Sbjct: 335 EETLILAFGLVVLVIFLFLRNWRTTLIPVIAIPISLLGAFFIMYVFNFSINILTLLGIVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
             GL VD  I+V E I       Q    +   G    Y  I  ++IT +I  + + F   
Sbjct: 395 ATGLVVDDAIVVMENIYRRIEDGQKPHEAAHEGSKEIYFAIISTSITLIIVFLPIVFLQG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI---PD 536
             G   R F +T+  SILISM  ++++   M    ++++K   I       F  +    +
Sbjct: 455 LTGRLFREFGVTVAGSILISMIVSLTLTPMMCARFLKHQKHGFIYNYTERFFVGMTNLYN 514

Query: 537 CIAIQFMRARFW-GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                FMR R    +   +        L         ++ K  +++ + A       ++ 
Sbjct: 515 RTLKGFMRFRGVSWLITVLAAFGIYTLLQVIPTELAPMEDKSNLRIQMTAPEGTSYEMMD 574

Query: 596 SNLESLQIGDIS 607
             +  +     +
Sbjct: 575 RYVLEVLKMVDT 586



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/330 (11%), Positives = 99/330 (30%), Gaps = 17/330 (5%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           +      +    I ++P          + ++    R      S          L      
Sbjct: 174 IRIWGEKRYAIRIKMDPTKLTAYSLTPLDVRNALQRQNLELPSGR-IEGYRTELTIRTEG 232

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                +    + +       + +       L+  +            +V +   P     
Sbjct: 233 RLFTPEEFSNIVLREAAGATILLSDVADVDLEAQNTRSILRGNNVIPMVGVAITPLPGAN 292

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV----GVIISAIAMLIYIWI 686
              + + V  ++ EI      ++  +         IRK I      +I++   +++ I++
Sbjct: 293 YIDIADRVYDRVNEIKKD-LPKDIILDYAFDGTTSIRKAITEVEETLILAFGLVVLVIFL 351

Query: 687 RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             + W   L  +  + + +        +F    N+  +  ++   G  V+D +VV + + 
Sbjct: 352 FLRNWRTTLIPVIAIPISLLGAFFIMYVFNFSINILTLLGIVLATGLVVDDAIVVMENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +         +   +   E     + TS+   I  LP+    G        F + +A
Sbjct: 411 --YRRIEDGQKPHEAAHEGSKEIYFAIISTSITLIIVFLPIVFLQGLTGRLFREFGVTVA 468

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             I+++   S+ +       +     K+ +
Sbjct: 469 GSILISMIVSLTLTP----MMCARFLKHQK 494



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +   I++   + + +  +F+ +F  L  + T+ L +   L     FG   N+ +   ++ 
Sbjct: 855  MFAFILALALVYLTLAAQFESFFDPLIIMFTVPLALVGALLTLWWFGHTLNIFSQIGIIV 914

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G    + +++ +      +     +   +   +S    L   + TS+A  + VLP+A+
Sbjct: 915  LVGIVTKNGILIVEFAN---QKMEEGMDAYEAAIESATLRLRPILMTSIATILGVLPIAL 971

Query: 789  -WGGSVIG--SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              G +        + +  G+  +   ++++   I  F    +
Sbjct: 972  ALGAASTSRIPMGVAIIGGLSFSLILTLYVIPAIYTFFNRKK 1013


>gi|218893695|ref|YP_002442564.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexD [Pseudomonas aeruginosa LESB58]
 gi|218773923|emb|CAW29737.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexD [Pseudomonas aeruginosa LESB58]
          Length = 1043

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 82/705 (11%), Positives = 186/705 (26%), Gaps = 65/705 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GLL+       +  + ++P+  P               + +   
Sbjct: 7   KRPNFAWVVALFISLAGLLVI-----SKLPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +   +  L   L   +G+  F      N   +I ++F      +     V 
Sbjct: 49  YPGASAKVLVDSVTSVLEESLNGAKGLLYFESTNNSNGTAEIVVTFEPGTDPDLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             L+   +++        L         +++   +  +    S          R   +++
Sbjct: 109 NRLKKAEARMPQAVLTQGLQVEQTSAGFLLIYALSYKEGAQRSDTTALGDYAARNINNEL 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   +S      N       FG     
Sbjct: 169 RRLPGVGKLQFFSS-EAAMRVWIDPQKLVGFGLSIDDVSNAIRGQNVQVPAGAFGSAPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +      +  K  +                 +    +                 +    
Sbjct: 228 SAQELTATLAVKGTL-------------DDPQEFGQVVLRANQDGSLVRLADVARLELGK 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T        A L A         V       
Sbjct: 275 ESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPEDMQYSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + ++ TL ++ LLG ++ +
Sbjct: 335 VDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLMVMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGISPAEATVKAMKQVSGAIVGITLVLSAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F  G      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLKPIPEGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +              +    RA  + +  + L ++     L         +  G + +
Sbjct: 515 AFNRGFARVTERYSLLNSKLVARAGRFMLVYAGLVAMLGYFYLRLPEAFVPAEDLGYMVV 574

Query: 582 GVLANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            V                        R  + S+ +      +  G+   L    ++    
Sbjct: 575 DVQLPPGASRVRTDATGEELERFLKSREAVASVFLISGFSFSGQGDNAALAFPTFKDWSE 634

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +        + E   L        V P     L   G   +
Sbjct: 635 RGAEQSAAAEIAALNEHFALPDDGTVMAVSPPPINGLGNSGGFAL 679



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +  +IS +                 +++    +++    +++   P 
Sbjct: 262 VRLADVARLELGKESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 DMQYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    IS  +   K++ +
Sbjct: 382 LMVMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGISPAEATVKAMKQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A   GSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIVGITLVLSAVFLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             W   L     LI+ I       A+   G+  ++     ++T+IG S  + +++ +  ++
Sbjct: 890  SWSIPLS--VMLIVPIGAIGAVLAVMVSGMSNDVYFKVGLITIIGLSAKNAILIVEFAKE 947

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
                     S RD   ++        + TSMA  + V+P+A+  G+      +    +  
Sbjct: 948  LW---EQGHSLRDAAIEAARLRFRPIIMTSMAFILGVIPLALASGAGAASQRAIGTGVIG 1004

Query: 804  GIVVAASSSIFIAAPILLFI 823
            G++ A    +       +++
Sbjct: 1005 GMLSATFLGVLFVPICFVWL 1024


>gi|170690254|ref|ZP_02881421.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
 gi|170144689|gb|EDT12850.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
          Length = 1081

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 65/675 (9%), Positives = 158/675 (23%), Gaps = 39/675 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           + ++P   P               + +    
Sbjct: 10  RPIFASVISIVITLGGALTMF-----SLPVAQYPDITPP-------------QITISATY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   +        +   S       I   F      +     V  
Sbjct: 52  PGASADVVANNVAAPIEQQVNGADNMIYMNSSSSSTGNLTINAFFEIGTNPQLAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    +   +    +    +++          ++   +       +D +   
Sbjct: 112 RVNLALPQLPQSVQAQGVQVQKKSSAFMMVIAIYSPDQRFNSTYIANYANIYVLDALKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ QL  T   +       N        G        
Sbjct: 172 PGANQSSIFGTPDYAMRVWLKPDRMAQLAITATDVQTAVQNQNQQFAVGRIGQSPTGSPV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V     ++                   + +     G+                  
Sbjct: 232 EQSFAVTTSGRLA------------EPAQFENIILRAASEGSAIVRLKDVGRAELGQKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +      A L           +          
Sbjct: 280 SIRSRFQGKPATIIAVYQQPGANALDVSKQVRASLAELSKSFPEGIKYDIAMDTTEFTRA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV+IV+++ +   +  L+   ++ ++++ T   ++LLG ++ + ++
Sbjct: 340 SISDVIHTFFEALVLVVIVVYIFLQSLRATLIPVLAVPISIVGTCMGMALLGFSINMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +             +           +    +      V 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMTVHKLPPKEAAKAAMDEVAGPVIAIVLVLCAVFVP 459

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G   + FAIT+ +S++IS   A+++  A+   +++    +            
Sbjct: 460 VAFVSGITGQLYKQFAITIAISVVISGLVALTLSPALAAVLLKSTHKEKKGFFRWFENAF 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                             +  L     +  L    +          +        V L  
Sbjct: 520 ARMTSGYSRAIQFIIKRFVLGLLIFVGMIALTVVIVKAIPGAFLPPEDQGYLLGAVQLPD 579

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
             S   +  + D   + F  ++             +            +           
Sbjct: 580 AASLDRTASVSDQVTEYFMKQEAVGSITTVDGYSLLDVQNKNNASTFFVGLKGFDERYTR 639

Query: 654 TEIVGPKISRELIRK 668
                      L   
Sbjct: 640 ANRSTQNAKAVLTDA 654



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 7/148 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  +  + + I  T    AL G   N+  +  ++  IG  V+D +VV + +    
Sbjct: 365 SLRATLIPVLAVPISIVGTCMGMALLGFSINMLTLFGMVLAIGIVVDDAIVVIENV--ER 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFG 804
            +    +  ++    +++E  G  V   +    +V      V G  G +   FAI +A  
Sbjct: 423 NMTVHKLPPKEAAKAAMDEVAGP-VIAIVLVLCAVFVPVAFVSGITGQLYKQFAITIAIS 481

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +V++   ++ ++  +   +     K  +
Sbjct: 482 VVISGLVALTLSPALAAVLLKSTHKEKK 509



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 64/162 (39%), Gaps = 7/162 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I   I + + +  +++ W   +G +  +   +        + G+E ++     +  L+  
Sbjct: 880  IFGLIMVFLILAAQYEKWSLPVGVLMAVPFALFGAFLAIMMRGLENDIYFQIGLTMLVAL 939

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            +  + +++++     +       S  D   ++  E L   V TS+A  +  +P+A+  G+
Sbjct: 940  AAKNAILIFEFA---VINREAGASVLDATVRASEERLRPIVMTSLAFILGCVPLAIAVGA 996

Query: 793  ---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  S    +  G++ A   ++F        +  W ++ +
Sbjct: 997  SANSRHSIGTGVIGGMLGATVIAVFFIPMFYYVLESWSSRKS 1038


>gi|220933884|ref|YP_002512783.1| acriflavin resistance protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995194|gb|ACL71796.1| acriflavin resistance protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1038

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/524 (13%), Positives = 156/524 (29%), Gaps = 38/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + V++  ++   G++        +  L  +P   P     L  D  G         
Sbjct: 9   RRPIFAVVISLLLIAFGIIS-----YDRLPLREYPDINPPVVTIL-TDYPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++            +++IT+ F  SR  +  A+ V   +  
Sbjct: 55  NAAIVETKITQLVEDRVSGIEGIQWIQSDSTDGRSRITVEFDVSRDIDAAANDVREAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  +    ++         I+    +  ++    +E +    R  +D++ + +   
Sbjct: 115 VVRQLPDEADPPMVFKADTNADVILWLNLSSTRLNR--MELTDYAERYLVDRMSVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   +    D   L     T   +       N               +     
Sbjct: 173 LVRVGGSLTYSMRIWLDREALAARSLTVEDVEAALRRENVELPAGRVESVTREFNVRV-- 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A            +                 +    A      
Sbjct: 231 -----------------ARAYSTPEDFARLVVRRGDDGHLIRLGEVARVEIGPADERTEL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       ++  +     +   I A  +R          +   +     G+   
Sbjct: 274 RGNGESMVGLGIIQQSTANTLEVAQAVKIEAERIRPSLPEGVTLNMSYDSSVFIEGAIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   +V++V+++ +   +  L+   ++ +++I     L  LG T+ L ++  +V
Sbjct: 334 VYTTLFIAMAVVILVIYLFLGNLRAMLIPAVTVPVSLIAAFTALYALGFTVNLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +   G  +    +  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVVLENIHRRIELGEPPLLAAYRGARQVGFAVVATTLVLIAVFVPLAFLQ 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G   R    FA+ M  ++  S   A+++   M   +IR    K+
Sbjct: 454 GNIGRLFTEFALAMAAAVAFSSLVALTLSPVMCARLIRADNQKT 497



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 69/210 (32%), Gaps = 4/210 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L  V              +        L  +Q    +++   + +++  ++I   +P 
Sbjct: 254 IRLGEVARVEIGPADERTELRGNGESMVGLGIIQQSTANTLEVAQAVKIEAERIRPSLPE 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               N            I++    + I+   +++ I++        L    T+ + +   
Sbjct: 314 GVTLNMSYDSSVFIEGAIKEVYTTLFIAMAVVILVIYLFLGNLRAMLIPAVTVPVSLIAA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   NL  + A++  IG  V+D +VV + +    +             +   +
Sbjct: 374 FTALYALGFTVNLLTLLALVLAIGLVVDDAIVVLENIH---RRIELGEPPLLAAYRGARQ 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                V T++      +P+A   G++   F
Sbjct: 431 VGFAVVATTLVLIAVFVPLAFLQGNIGRLF 460



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/126 (15%), Positives = 48/126 (38%), Gaps = 8/126 (6%)

Query: 697  ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +      F L   G   N+ +   ++ LIG +  + +++ +      +L    
Sbjct: 884  VIMLTVPLAIAGALFGLWVTGQTLNIYSQIGIVMLIGLAAKNGILIVEFAN---QLRDQG 940

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            I F D +  +    L   + T++   +  LP+ +    G          +  G++ A   
Sbjct: 941  IEFHDALMDAARLRLRPVLMTAVTTVMGTLPLILGSGPGAESRFVIGTVVFSGVLFATFF 1000

Query: 812  SIFIAA 817
            ++F+  
Sbjct: 1001 TLFVVP 1006


>gi|289649230|ref|ZP_06480573.1| AcrB/AcrD/AcrF family transporter [Pseudomonas syringae pv. aesculi
           str. 2250]
          Length = 1047

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 180/692 (26%), Gaps = 55/692 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIFTLNYKDGSATKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 RRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSAVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVKQRLTELSVNFPEGVEFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHSEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGRFTDRYERVSSGMIKRAGRYMLLYVGIVGLMGFFYLRLPDSFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V        S       + Q+ +    + +      + L +          +     K 
Sbjct: 575 DVQLPPGATRS---RTDLTAQLLENYMLSREATGAVTMLLGFSFSGMGENAGLAFPTLKD 631

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +E     +         +    L    ++ V
Sbjct: 632 WSERGKGQSAAEEAAAFNQHFSGLADGTVMAV 663



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVKQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKERW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A    + I  PI         +  
Sbjct: 1009 ATLLGV-ILVPIFFVWVLSVLRRK 1031


>gi|116052740|ref|YP_793057.1| multidrug efflux RND transporter MexD [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587961|gb|ABJ13976.1| multidrug efflux RND transporter MexD [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 1043

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 82/705 (11%), Positives = 186/705 (26%), Gaps = 65/705 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GLL+       +  + ++P+  P               + +   
Sbjct: 7   KRPNFAWVVALFISLAGLLVI-----SKLPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +   +  L   L   +G+  F      N   +I ++F      +     V 
Sbjct: 49  YPGASAKVLVDSVTSVLEESLNGAKGLLYFESTNNSNGSAEIVVTFEPGTDPDLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             L+   +++        L         +++   +  +    S          R   +++
Sbjct: 109 NRLKKAEARMPQAVLTQGLQVEQTSAGFLLIYALSYKEGAQRSDTTTLGDYAARNINNEL 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   +S      N       FG     
Sbjct: 169 RRLPGVGKLQFFSS-EAAMRVWIDPQKLVGFGLSIDDVSNAIRGQNVQVPAGAFGSAPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +      +  K  +                 +    +                 +    
Sbjct: 228 SAQELTATLAVKGTL-------------DDPQEFGQVVLRANQDGSLVRLADVARLELGK 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T        A L A         V       
Sbjct: 275 ESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPEDMQYSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + ++ TL ++ LLG ++ +
Sbjct: 335 VDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLMVMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGISPAEATVKAMKQVSGAIVGITLVLSAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F  G      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLKPIPEGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +              +    RA  + +  + L ++     L         +  G + +
Sbjct: 515 AFNRGFARVTERYSLLNSKLVARAGRFMLVYAGLVAMLGYFYLRLPEAFVPAEDLGYMVV 574

Query: 582 GVLANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            V                        R  + S+ +      +  G+   L    ++    
Sbjct: 575 DVQLPPGASRVRTDATGEELERFLKSREAVASVFLISGFSFSGQGDNAALAFPTFKDWSE 634

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +        + E   L        V P     L   G   +
Sbjct: 635 RGAEQSAAAEIAALNEHFALPDDGTIMAVSPPPIDGLGNSGGFAL 679



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V       +  +IS +                 +++    +++    +++   P 
Sbjct: 262 VRLADVARLELGKESYNISSRLNGTPTVGGAIQLSPGANAIQTATLVKQRLAELSAFFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 DMQYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    IS  +   K++ +
Sbjct: 382 LMVMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGISPAEATVKAMKQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A   GSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIVGITLVLSAVFLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             W   L     LI+ I       A+   G+  ++     ++T+IG S  + +++ +  ++
Sbjct: 890  SWSIPLS--VMLIVPIGAIGAVLAVMVAGMSNDVYFKVGLITIIGLSAKNAILIVEFAKE 947

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
                     S RD   ++        + TSMA  + V+P+A+  G+      +    +  
Sbjct: 948  LW---EQGHSLRDAAIEAARLRFRPIIMTSMAFILGVVPLALASGAGAASQRAIGTGVIG 1004

Query: 804  GIVVAASSSIFIAAPILLFI 823
            G++ A    +       +++
Sbjct: 1005 GMLSATFLGVLFVPICFVWL 1024


>gi|226311466|ref|YP_002771360.1| protein-export membrane protein SecF [Brevibacillus brevis NBRC
           100599]
 gi|226094414|dbj|BAH42856.1| protein-export membrane protein SecF [Brevibacillus brevis NBRC
           100599]
          Length = 305

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 152/307 (49%), Gaps = 8/307 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
             +      I    ++ R      S +  I  +      GL+ G+DFK G +L +   + 
Sbjct: 1   MSYDKDHTVIRFDIVKNRRKFFIASSVIIIIGLLFTLFQGLHLGVDFKAGTRLDMFIGKT 60

Query: 589 VDLSVVRSNLE-SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + + V   ++  +   + S     GE     R      D    +  L  ++  +     
Sbjct: 61  FNPTDVEEVIKKEVPNVNFSKVTPYGENQAYTRF-----DQTISSDTLMKMEMALKAKYG 115

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
               +    V P I++E+++K  + V I+A+ + IYI IRF+W F +  +  L  D+   
Sbjct: 116 QQVSKQVSSVDPSIAQEMVQKAAIAVAIAAVGIAIYIAIRFQWLFGIACVVGLAHDVFIP 175

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSI 765
           +  F++ G+E ++T +AA+LT++GYS+NDK+V++DR+R+N++   +        L++ S+
Sbjct: 176 IALFSILGLEVDITFIAALLTILGYSINDKIVIFDRIRENLRTMKSKTIPELEHLVNVSL 235

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +T+ RSVYT    F + L +AV G   I +F++ + FG+V    SSIFIAA + + + +
Sbjct: 236 WQTMRRSVYTVATVFFTALALAVLGSESIQNFSLALLFGLVSGTYSSIFIAAQVWVNLKE 295

Query: 826 WRAKNAR 832
              K  +
Sbjct: 296 RNMKKKK 302


>gi|270296709|ref|ZP_06202908.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272696|gb|EFA18559.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1037

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 82/688 (11%), Positives = 185/688 (26%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LGILPIAQYPDITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAQTVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++      D      +  S       +DQ+   
Sbjct: 111 RVSVAQSSLPTPVVVQGVTVQKQSSNIVMFLTMTSDSKDYDGLYLSNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
                          +    DP+ +R    + A +       N        G     D+ 
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPAAMRIRYLSPADVYQAIQSQNVEVSAGNVGQPIGTDNK 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  K  ++                +    I   E G +        +I      
Sbjct: 231 NAYQYSLTVKGRLT-------------SPEEFGNIILRTETGGKILRLRDVAHIDLGSTS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YSVVSQLDGKPTAAIAIYQQPGSNSLDVSKGVKAKMQELSQNFPAGIQYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA++SL G ++   +
Sbjct: 338 ASIDEVMVTFLETTLLVVLVIFLFLQNWRAVVIPCITIPVSLIGTLAVMSLFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           +   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENSTRLLDTGRYTSRQAVTEAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPL 528
            T ++    G   + FA+T+  S ++S F ++++  A+   +++  +          N L
Sbjct: 458 PTTLVSGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALMLQPTRPSKNPLYRGFNHL 517

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL--NYGIDFKGGIQLGVLAN 586
                      ++++  R     +S         LLF          +  G     V   
Sbjct: 518 YDKTQGVYDRIVEYLLQRPVASIVSYAVFTLIAVLLFVKWPSTFVPEEDDGYFLAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  + +     S+                 G+         ++K       
Sbjct: 578 PASSLERTQAVGKQINKILDSYPEIKDYIGISGFSVMGGGEQSNAATYFIVLKNWNERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T +            +    I  ++
Sbjct: 638 KEHTAEAVVQRFNMEVYGIQEAEIFAMV 665



 Score = 42.0 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 38/132 (28%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L S     +S  +        +  Q           V   +++             T  
Sbjct: 272 DLGSTSYSVVSQLDGKPTAAIAIYQQPGSNSLDVSKGVKAKMQELSQNFPAGIQYNVTLD 331

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +    +  +  + + +L+       W   +    T+ + +  TL   +LFG 
Sbjct: 332 TTDVIHASIDEVMVTFLETTLLVVLVIFLFLQNWRAVVIPCITIPVSLIGTLAVMSLFGF 391

Query: 717 EFNLTAVAAVLT 728
             N   +  ++ 
Sbjct: 392 SINTLTLFGLIL 403


>gi|170748855|ref|YP_001755115.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655377|gb|ACB24432.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 1065

 Score =  181 bits (459), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 63/540 (11%), Positives = 146/540 (27%), Gaps = 40/540 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +   +   +G +           + ++P  +P               + +    
Sbjct: 10  RPIFASVTSIVFLILGFVA-----YESLPVSQYPEIVPPT-------------VTVRASY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQNKI-TLSFADSRFKENIADKVTL 117
                  +       +   +                 N + T++F      +     V  
Sbjct: 52  PGANAETVAATIATPIEQEVNGVDNMLYMTSLSTNDGNMLLTVTFKVGTNLDIANVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L  D +   +         +++               +  I     D++   
Sbjct: 112 RLSVAQPRLPPDVRNLGVTVRKASPDLMLVVHLLSPNKTYDQNYLANYIYLNIRDELLRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +                   DP++L     +   ++      N                +
Sbjct: 172 DGVGDITIFGGNEYAERVWVDPNKLAAYGLSVTDVTTALQEQNVQVAAGQLNGPPAAKGE 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q +V+ +                 KT +   ++       R         +       
Sbjct: 232 AFQLVVQSQAR--------------FKTPEQFAEVIIKAQDGRLVRVKDIARVEMGQKDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +      +   +   ++    P     +          
Sbjct: 278 TTNSFLNDTPAVGIGAFQRPGTNALDAAASVKKVMEEVKKNFPPDVEYRIAYNPTEFIEE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV+IV+ + +   +  L+   +I +++I T A ++  G +L   ++
Sbjct: 338 SIHEVYKTLFEAVGLVVIVVLVFLQSWRTALIPVIAIPVSLIGTFAAMAAFGFSLNNLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +           +    +      V  
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERNMAEGLSPGDAAHKTMDEVGGAVIAIALVLAAVFVPT 457

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + FA+T+  S LIS F ++++  A+   ++     +      L+RF   
Sbjct: 458 AFIPGISGQFYKQFALTIAASTLISAFNSLTLSPALCKLLLVPHHARKEPKFFLTRFVNW 517



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  +   +   L      G + N+     ++ LIG +  + +++ +      
Sbjct: 903  SWALPLAILLVVPTGVLAALAGVQFRGQDNNILTQIGLIVLIGLAAKNAILIVEFAHDIE 962

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +         +   ++    L   + T+ A  +  LP+ V    G  +  +    + FG+
Sbjct: 963  QREHRG--PVEAAVEACRLRLRPILMTAFAFILGTLPLVVATGPGAEMRQALGTAVFFGM 1020

Query: 806  VVAASSSIFIAAPILL-------FIYDWRAKN 830
            + A    +F+     +       ++  +R K+
Sbjct: 1021 IGATFFGLFLTPVFYVVIRHFSIWLGRFRKKH 1052



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 65/154 (42%), Gaps = 18/154 (11%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  AL  +  + + +  T    A FG   N   +  ++  IG  V+D +VV + + +NM
Sbjct: 363 SWRTALIPVIAIPVSLIGTFAAMAAFGFSLNNLTLFGLVLAIGIVVDDAIVVVENVERNM 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSM--------AAFISVLPMAVWGGSVIGSFAIP 800
                 +S  D   K+++E  G  +  ++         AFI  +      G     FA+ 
Sbjct: 423 AE---GLSPGDAAHKTMDEVGGAVIAIALVLAAVFVPTAFIPGIS-----GQFYKQFALT 474

Query: 801 MAFGIVVAASSSIFIAAPI--LLFIYDWRAKNAR 832
           +A   +++A +S+ ++  +  LL +     K  +
Sbjct: 475 IAASTLISAFNSLTLSPALCKLLLVPHHARKEPK 508


>gi|154244471|ref|YP_001415429.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Xanthobacter
           autotrophicus Py2]
 gi|154158556|gb|ABS65772.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Xanthobacter autotrophicus Py2]
          Length = 1069

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 73/690 (10%), Positives = 180/690 (26%), Gaps = 39/690 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  +   IGL+      L +  + ++P+ +P               + +    
Sbjct: 9   RPVLSNVLALVFVLIGLVS-----LTRLPVSQYPNIVPPT-------------VSVSTSY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +   EG+              + ++F            V  
Sbjct: 51  PGASAKTMIDTVALPIEQQVNGVEGMLYMQSWSASDGTYTLIVTFDIGADPNMAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L    +   +    +    +              +  +   I    +++   
Sbjct: 111 RVNIALASLPTAVQAQGVTILQKGTSILEFVTLISPDGRYDGLFLNNYAIINIQNELERV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP R++    T   +S      +        G+    D+ 
Sbjct: 171 AGVANVGIFGAGTYALRIWMDPDRMQAFGLTPQDISNAIQKQSQIVTPGQLGIPPAPDNA 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY V     +            D K ++ ++    +  G R         +       
Sbjct: 231 AFQYTVNIAGRLD-----------DAKDYENIIVKVDNSDGGRIVRIRDIGRVELGAQSY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +              L+          +          
Sbjct: 280 SKDFMQDNKPAAGIGIFQLPAANALDVAARVSKKMEELKKDFPEGLEYSIPFNTTLFVSA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T    A LVL+V+ + +   +  LV   ++ + +I   A +  +G T+ L ++
Sbjct: 340 SIDEVWKTLFEAAILVLVVILLFLQDWRATLVPATTVPVTIIGAFAAMDAMGFTINLSTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIAT 474
             I+L IG+ VD  I++ E +     +  +   + +      +     I    ++  +  
Sbjct: 400 FAIILAIGIVVDDAIVIVEGVARHIEEGMAGQPAAEKAMDELFGPVVGITLVLMSVFLPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   + FA+ +  +  IS   A ++        +R              F  I
Sbjct: 460 SFIPGLTGQMFKQFALVIAATAFISAINAATLKPTQCALWLRQPVPPEKRNFIFRGFNKI 519

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  +       V  S +  I ++ L+              + +         + + 
Sbjct: 520 YAKAEHGYTGVISRMVHHSKVMVIIALALMGVAAYGLTRVPTSFLPIEDQGYFLAHVQLP 579

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            ++  +     ++  +    K   V                 +    +T I      +  
Sbjct: 580 DASNLNRTKKVMADVSERIRKVPGVETVLAISGISVLDNSSTLANAGVTYITLKPWSERY 639

Query: 655 EIVGPKISR--ELIRKGIVGVIISAIAMLI 682
              G  +      + K +  V+ + + +L+
Sbjct: 640 ATTGQDLLSLYINLNKAVADVVQAEVLILL 669



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 67/216 (31%), Gaps = 15/216 (6%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
              Q   S     ++E +                      +  ++        +     +L
Sbjct: 833  TAQGFSSGQALSLMEQIASATLPPGTGFEWTAMSYQEKAVGNQIYY------VFGLAILL 886

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +Y  +      W   +  I  + L +  T+G     GI  NL     ++ LI  +  + +
Sbjct: 887  VYFVLAGQYESWIQPMAVILAVPLALLGTVGALVGLGISNNLYTQIGLVLLIALASKNAI 946

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ +  R+        +   D   ++        + TS A  + VLP+      G +   
Sbjct: 947  LIVEYAREKRAE---GMEIMDAAVEASRLRFRPILMTSFAFILGVLPLVFATGAGANSRK 1003

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            S  I +  G++ +   ++         +  +  K  
Sbjct: 1004 SIGIAVVSGMLASTCLAVLFVPSFYTVLQRFEEKLK 1039



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 6/117 (5%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I          G   NL+ + A++  IG  V+D +V+ + +    
Sbjct: 365 DWRATLVPATTVPVTIIGAFAAMDAMGFTINLSTLFAIILAIGIVVDDAIVIVEGV---A 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
           +     ++ +   +K+++E  G  V  ++      LP +      G +   FA+ +A
Sbjct: 422 RHIEEGMAGQPAAEKAMDELFGPVVGITLVLMSVFLPASFIPGLTGQMFKQFALVIA 478


>gi|254411372|ref|ZP_05025149.1| protein-export membrane protein SecF [Microcoleus chthonoplastes
           PCC 7420]
 gi|196181873|gb|EDX76860.1| protein-export membrane protein SecF [Microcoleus chthonoplastes
           PCC 7420]
          Length = 295

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 69/247 (27%), Positives = 139/247 (56%), Gaps = 8/247 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + P++L+ VR  L    +G+ + Q     +   + ++ +  D   ++++ + + ++I 
Sbjct: 35  NCDEPIELAEVREVLNEQDLGNSTIQRIGSAQQ-GLTIRTKTLDVEQRSQLQKALSERIG 93

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
           E  P       + VGP I ++L   G++ +++S   +L+Y+  RF++ +A  A   L+ D
Sbjct: 94  EFDP--AATQIDTVGPIIGQQLFTSGLLALLVSFAGILVYLSFRFQFDYAFLAFIALLHD 151

Query: 704 ITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +  TLG F++ G+    E +   V A+LT+IG+SVND VV+YDR+R+ +  +        
Sbjct: 152 VLVTLGIFSILGLVQGVEVDSLFVVALLTIIGFSVNDTVVIYDRIREVIAKHPDQH-IDQ 210

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++D +IN+TL RS+ T++   ++++ + ++GG  +  FA+ +  G +  A SSIF+A+ +
Sbjct: 211 IVDDAINQTLTRSINTTLTTVLTLVSIFLFGGETLKYFALALIVGFIAGAYSSIFVASTL 270

Query: 820 LLFIYDW 826
           L F  + 
Sbjct: 271 LAFWRER 277


>gi|118589922|ref|ZP_01547326.1| hydrophobe/amphiphile efflux-1 family protein [Stappia aggregata
           IAM 12614]
 gi|118437419|gb|EAV44056.1| hydrophobe/amphiphile efflux-1 family protein [Stappia aggregata
           IAM 12614]
          Length = 1051

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 89/681 (13%), Positives = 180/681 (26%), Gaps = 38/681 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   G+L           +++FP+  P                      
Sbjct: 9   RPKFALVISIVITIAGVL-----GYLSLPVEQFPNITPPVV---------NVSATYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +   + +        +     N  + ++FA     +         +  
Sbjct: 55  AEVLEETVAAPIEGQVNGVDDMIYMQSTSNDSGNYSLNVTFAVGTDPDIATVNTQNRVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            NS+L  D   N +         +++            +  S        D +       
Sbjct: 115 ANSQLPSDVTNNGVTVQKASTNMLLVITLFSPNGSYDPVFLSNYASINLKDSLARVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP RL  L  T           N        G   + D    QY
Sbjct: 175 RADVMTDFSYGMRIWLDPDRLASLGMTPTDFITAVRDQNIQVAAGQIGAPPVPDGQQFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  +S                +    +                 +     V     
Sbjct: 235 TIKAKGRLS-------------SPEEFEQIVLRTGADGAVVTIGDVARVELGAQVYNASG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +              +     +        L     P     V          S + 
Sbjct: 282 EYNSKPSTVLAIYQAPGANALQVSQNVLARLDDLAKNFPPDMEYGVPFNTTDFVQASLND 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV+ V+F+ +   +  ++   +I +++I T A+L  LG TL   S+  +V
Sbjct: 342 VITTLFLTFLLVVSVVFIFLGNWRATIIPTVAIPVSLIGTFAVLLALGMTLNTISLFALV 401

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +         S   +      +  S +  + +  L   V   F 
Sbjct: 402 LAIGIVVDDAIVVVENVERIISDEGLSPKEATTKAMEQITSPVIATTLVLLAVFVPTIFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     FA+T+ +S+LIS   A+++  A+   I++ +      I  L    +    
Sbjct: 462 PGITGRLYSQFAVTISVSVLISSINALTLSPALCGLILKARSGPPRGIMGLFDRGITSVR 521

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT------HGLNYGIDFKGGIQLGVLANRPVDL 591
                +  R     I  L  +     L               + +G + + V       L
Sbjct: 522 NGYTAVIRRLVRFAIVGLVVVAGAVALIVTLGGSLPQGFLPSEDQGYLMVDVQLPDGASL 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
               +  + +          +               S     V+  +K       P   I
Sbjct: 582 QRTETVTKQVVELASKTAGVEDVVIVNGYSILNGATSSNAALVIATMKNWEDRQAPDLRI 641

Query: 652 QNTEIVGPKISRELIRKGIVG 672
                        +    I+ 
Sbjct: 642 NAILAKFWAEFSTIPGANIIA 662



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 87/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       Q+ + S +        L   Q    +++  ++ +      + +  P 
Sbjct: 262 VTIGDVARVELGAQVYNASGEYNSKPSTVLAIYQAPGANALQVSQNVLARLDDLAKNFPP 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  +   I  + ++ + ++  ++I    W   +     + + +  T
Sbjct: 322 DMEYGVPFNTTDFVQASLNDVITTLFLTFLLVVSVVFIFLGNWRATIIPTVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G+  N  ++ A++  IG  V+D +VV + +     +    +S ++   K++ +
Sbjct: 382 FAVLLALGMTLNTISLFALVLAIGIVVDDAIVVVENV--ERIISDEGLSPKEATTKAMEQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
                + T++      +P     G        FA+ ++  +++++ +++ ++  +
Sbjct: 440 ITSPVIATTLVLLAVFVPTIFMPGITGRLYSQFAVTISVSVLISSINALTLSPAL 494



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 55/151 (36%), Gaps = 6/151 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            L  +     W   +  + ++   I   L    + G + NL     ++ L+G    + +++
Sbjct: 883  LFLVAQYESWTMPIAILMSVSFAILGALVAVFVTGGDVNLYTQIGMIMLVGMGAKNAILI 942

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +   +         + RD   ++ +      + T+++  + V+P+      G +   + 
Sbjct: 943  VEFAMEQR---DDGKTIRDAAVEAAHLRFRAVMMTALSFLLGVVPLMTASSAGAASQKAI 999

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               +  G++ A    I +   + + +   R 
Sbjct: 1000 GFAVFGGMLFATCIGILMIPILYVNMQTMRE 1030


>gi|39936021|ref|NP_948297.1| putative RND multidrug efflux transporter MexF [Rhodopseudomonas
           palustris CGA009]
 gi|39649875|emb|CAE28397.1| putative RND multidrug efflux transporter MexF [Rhodopseudomonas
           palustris CGA009]
          Length = 1046

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 84/687 (12%), Positives = 186/687 (27%), Gaps = 44/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                  L  +I  +G L  +     +  + ++P  +P               + +    
Sbjct: 9   RPVLSNTLAFLIVLLGALALM-----RLPVSQYPDVVPPT-------------VSVSATY 50

Query: 63  DDFVNGF-LQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                   +   +  +   +   EG+         +    + ++F            V  
Sbjct: 51  PGASARTVMDSVALPIEQQVNGVEGMIYMQSTSASDGSYNLVVTFDIGTDPNMAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   +++L        L    +    +              +  +        +++   
Sbjct: 111 RVSLASAQLPTSVSTQGLNIKKKSTAILQFVSLVSSDGRYDNLFLANYAKINIQNELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L+    T + +       +N     + G        
Sbjct: 171 PGVGDVSVLGSGSYAMRIWLDPDKLQSYGLTPSDVISAVQQQSNQVTAGLVGGPPAPSIV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY ++                 +    + +V  + D+ G +         +    +  
Sbjct: 231 NFQYALDVVGR-----------FNEATDFEKIVVKAVDQGGGQLVRIGDIGRVELGASSY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          S     +     E        +           V   +      
Sbjct: 280 GQNATLDGKPSAAIAISLLTGANALSVAEAVNAKMKEMAGSFPAGLDYKVSFDSTKFITA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I A LVL+V+ M +   +  LV   ++ + +I   A +S +G T+   S+
Sbjct: 340 SVDEVYETLIIAAVLVLVVILMFLQDWRAMLVPATTVPVTIIGAFAAMSAMGFTVNTTSL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIAT 474
             +VL IG+ VD  I++ E +        S   +     S  +  I       +   +  
Sbjct: 400 FALVLAIGIVVDDAIVIVEGVSRHIAGGMSSREAAVKAMSELFGPIIGITLVLMAVFLPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   + FA+ +  + LIS   A+++        +R              F  +
Sbjct: 460 AALPGLTGKMYQQFALVIAATALISAVNAVTLKPTQCALWLRAPVPPEQRGIVYRVFNAV 519

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  +       V  SI  +I  + L+       G+ F G  ++        D    
Sbjct: 520 YARCEAVYAALIRRLVAFSIPTTIVGLALV-------GVAFYGLSRVPTAFLPSEDQGYF 572

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +L+          +    K   +  +    +SV     +  +    T           
Sbjct: 573 IISLKLPDAASAGRSDAAVAKAVELVRKTPGVESVIGVSGISPLDNNATMYNAGMLYVVL 632

Query: 655 EIVGPKISRELIRKGIVGVIISAIAML 681
                + +++L    I   + +A+A L
Sbjct: 633 HDWDQRKTKDLSIDAIAAKVRAALAQL 659



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 75/188 (39%), Gaps = 9/188 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    ++ +       +      ++         E+    I+  ++  + +L+++    
Sbjct: 308 EAVNAKMKEMAGSFPAGLDYKVSFDSTKFITASVDEVYETLIIAAVLVLVVILMFLQ--- 364

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       +  G   N T++ A++  IG  V+D +V+ + +    
Sbjct: 365 DWRAMLVPATTVPVTIIGAFAAMSAMGFTVNTTSLFALVLAIGIVVDDAIVIVEGV---S 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +     +S R+   K+++E  G  +  ++      LP A   G        FA+ +A   
Sbjct: 422 RHIAGGMSSREAAVKAMSELFGPIIGITLVLMAVFLPAAALPGLTGKMYQQFALVIAATA 481

Query: 806 VVAASSSI 813
           +++A +++
Sbjct: 482 LISAVNAV 489



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/444 (11%), Positives = 125/444 (28%), Gaps = 32/444 (7%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
              ++  ++GI      A   N  +   +  +  + ++   S+D   ++  + +   +   
Sbjct: 604  VESVIGVSGISPLDNNATMYNAGMLYVVLHDWDQRKTKDLSIDAIAAKVRAALAQLDTAT 663

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
             +  +     G G   GF + + +    S F A+    A             I     + 
Sbjct: 664  ALVLMPPPIQGIGNTSGFTMMVEMKNGSSDFLAL--QNATEQLAANASTQSGITHAASTF 721

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               +     +                       L +  +N    F    Q+ V A+ P  
Sbjct: 722  KGNVKQLRLVVDRMKAETLGVTVGQVFSAVESYLGSTYVNQFTKFNNVFQVYVQADAPFR 781

Query: 591  LSVVRSNLESLQIGDISFQNFDG-------------------EKNFLVRLQYQPGDSVAQ 631
            L         ++                                  LV        S   
Sbjct: 782  LRPDDVLKLKVKGSGGQMVPVGAVAYLTDEVGPPLITLYNLYPAATLVGSPAAGFSSGEA 841

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
              ++  V  K       +           +  ++         ++ + +   +  +++ W
Sbjct: 842  MSLMSEVAAKSLPASMGTAWTGMSYQEQVVGDQI----YYVFAVALLLVYFVLAGQYESW 897

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + L +  T+      G+  +L     ++ LI  +  + +++ +  R+    
Sbjct: 898  LQPLAVILAVPLTLLGTVAALEWSGLPNDLYTQIGIVLLIALAAKNAILIVEYARE---K 954

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
                +   +   ++        + TS A    +LP+A+  G+  G   S  I +  G++ 
Sbjct: 955  CMEGMPIAEAAVEAARLRFRPILMTSFAFIFGMLPLALATGAGAGARVSLGIAVVAGMLA 1014

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            +   ++         +     +  
Sbjct: 1015 STGLAVLFVPAFFAVLQRLGTRRQ 1038


>gi|88859695|ref|ZP_01134335.1| putative preprotein translocase SecF, auxillary membrane component
           (General Secretory Pathway) [Pseudoalteromonas tunicata
           D2]
 gi|88818712|gb|EAR28527.1| putative preprotein translocase SecF, auxillary membrane component
           (General Secretory Pathway) [Pseudoalteromonas tunicata
           D2]
          Length = 317

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 75/297 (25%), Positives = 143/297 (48%), Gaps = 4/297 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            F +         + RF G+ +S+   + +   L  +GLN+ I+F GG      + + ++
Sbjct: 1   MFKLFLSTRPLATKLRFAGLFLSLFLMLFATLGLVKNGLNFSIEFNGGYITEFQSQQSLN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR+ + +L   + +        +    +  Q  D+  +T   +             T
Sbjct: 61  VPEVRTAISALLGQEQAAGLKVSTADQHHFVIRQNLDAAGETN-QQWFSTLNDTYHGELT 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +     +G ++  EL+ +G + ++ + + +LIY+ +RF+W  A+GA+  L  DI   LG 
Sbjct: 120 LLEANFIGAQVGAELLDQGGMAMLSAILMVLIYLALRFEWRLAVGAVAALFHDILLVLGL 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI---SFRDLIDKSINE 767
           FA   +EF+LT +A++L +IGYS+ND ++V DR+R+ M+              I+ +I  
Sbjct: 180 FAWLQVEFDLTVLASILAIIGYSLNDSIIVADRLRELMRANLPRAEVDPLGCAINDAITS 239

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           TL R++ TS     ++  + +  G  +  F++ +  GIVV   SSI I+A +     
Sbjct: 240 TLSRTLITSGTTLATIASIWLLAGPPLAGFSLALFSGIVVGTLSSICISATLPQLFG 296


>gi|330986056|gb|EGH84159.1| AcrB/AcrD/AcrF family transporter [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 1047

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/692 (10%), Positives = 182/692 (26%), Gaps = 55/692 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPSLPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIFTLNYKDGSATKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGYGLSIDDVNAAIRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPEGVEFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHSEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +  +  L        ++ +G + +
Sbjct: 515 GFNRLFGRFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGLFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +        S     + + Q+ +    + +      + L +          +     K 
Sbjct: 575 DLQLPPGATRS---RTVLTAQLLENYMLSREATGAVTMLLGFSFSGMGENAGLAFPTLKD 631

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +E     +         +    L    ++ V
Sbjct: 632 WSERGKGQSAAEEAAAFNQHFTGLADGTVMAV 663



 Score = 81.7 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 84/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R +     +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A    + I  PI         +  
Sbjct: 1009 ATLLGV-ILVPIFFVWVLSVLRRK 1031


>gi|298487367|ref|ZP_07005415.1| Inner membrane efflux transporter of RND family multidrug efflux
           pump [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298158170|gb|EFH99242.1| Inner membrane efflux transporter of RND family multidrug efflux
           pump [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 1047

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 180/692 (26%), Gaps = 55/692 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIFTLNYKDGSATKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSAVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVKQRLTELSVNFPEGVEFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHSEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGRFTDRYERVSSGMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V        S       + Q+ +    + +      + L +          +     K 
Sbjct: 575 DVQLPPGATRS---RTDLTAQLLENYMLSREATGAVTMLLGFSFSGMGENAGLAFPTLKD 631

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +E     +         +    L    ++ V
Sbjct: 632 WSERGKGQSAAEEAAAFNQHFSGLADGTVMAV 663



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVKQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A    + I  PI         +  
Sbjct: 1009 ATLLGV-ILVPIFFVWVLSVLRRK 1031


>gi|78059939|ref|YP_366514.1| hydrophobe/amphiphile efflux pump [Burkholderia sp. 383]
 gi|77964489|gb|ABB05870.1| Hydrophobe/amphiphile efflux pump [Burkholderia sp. 383]
          Length = 1047

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 61/557 (10%), Positives = 147/557 (26%), Gaps = 45/557 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I  +GL+       P+  + R+PS  P               + +   
Sbjct: 7   RRPVFAWVIALFIILLGLIAI-----PELPVARYPSVAPPT-------------VTITAT 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            S    Q KIT +F           +V 
Sbjct: 49  YPGATPQTMTDSVLSLIERELSGVRNLLYFESASDTSGQAKITATFKPGTDSAMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V  +L    ++N ++  +     ++      +         +  + R  ++ +  
Sbjct: 109 NKLKSVEPRLPPVVRQNGVIVESASTGFLLFVGLKSESGRYDENALADYMARNVVEDLRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP +L     +   ++      N        G       
Sbjct: 169 VEGVGKVQLFGS-EQAMRIWVDPQKLITYGLSMNDLTTAVAQQNVQIAPGSLGAAPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +        +        +      
Sbjct: 228 QRVTVPLTAQGQLT-------------SPEQFAKIVLRANANGSKVVLGDVARVELGPQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T E       M+           +         
Sbjct: 275 FTFVNSENGKPATFAGVQLAPGANAVKTAEAVREQLDMIAKTMPAGMTYSIPFDTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 335 ISIEKVIHTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAMLGTFTVMLLTGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMVEEGLSPKDATIKAMKEITGAIIGITLVLTAVFL 454

Query: 476 VLFFFGG-------GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            +    G             A+++  S L+++    ++   M+  +      K       
Sbjct: 455 PMAMSSGSVGVIYQQFTMSMAVSIMFSALLALTLTPALCATMLKPVEHGHHEKRGFFGWF 514

Query: 529 SRFFLIPDCIAIQFMRA 545
           +R F          +  
Sbjct: 515 NRRFDRMTNWYETRVGK 531



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 79/230 (34%), Gaps = 14/230 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q              F         ++V     +      I + +
Sbjct: 258 SKVVLGDVARVELGPQSFTFVNSENGKPATFAGVQLAPGANAVKTAEAVREQLDMIAKTM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I K I  +I + + + + +++     R+    A+ A   + 
Sbjct: 318 PAGMTYSIPFDTAPFVKISIEKVIHTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAM- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T     L G   N+  +  ++  IG  V+D +VV + +     +    +S +D  
Sbjct: 377 ---LGTFTVMLLTGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMVEEGLSPKDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
            K++ E  G  +  ++      LPMA+  GSV      F + MA  I+ +
Sbjct: 432 IKAMKEITGAIIGITLVLTAVFLPMAMSSGSVGVIYQQFTMSMAVSIMFS 481



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 65/153 (42%), Gaps = 13/153 (8%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L +   LG   L G+  ++     +
Sbjct: 865  QAPMLMALSMVVVFLVLAALYESWAIPLSVMLVVPLGLIGALGAVMLRGMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            +T+IG S  + +++ +   ++R+        +   +   ++    L   + TS+A  + V
Sbjct: 925  ITVIGLSAKNAILIVEVAKQLREE------GMGLIESAVQASKLRLRPILMTSLAFGLGV 978

Query: 784  LPMAVWGG---SVIGSFAIPMAFGIVVAASSSI 813
            +P+ +  G       +    +  G+V A   +I
Sbjct: 979  VPLMIATGASAETQHAIGTGVFGGMVTATVLAI 1011


>gi|332532669|ref|ZP_08408545.1| RND multidrug efflux transporter [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332037885|gb|EGI74334.1| RND multidrug efflux transporter [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 1032

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 71/629 (11%), Positives = 179/629 (28%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   GL+           L  +P                         
Sbjct: 9   KRPVFAIVINLLLLTFGLVA-----FTMLPLREYPDIETPIV---------NISTEYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S ++       S R  ++ IT+ F  +R  +  ++ V   +  
Sbjct: 55  SAEIIETKITQIIENRISGIEGIKSINSSSRNGRSNITIEFDINRDIDAASNDVRERVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    +   +  +   E  I     N +     +++ S    R  +D++ + +   
Sbjct: 115 ALDSLPDQVRPPEVSKSNSDESPIAWFVLNSE--TMDSLQLSDYAQRFIVDRLAVVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +   +     T++ +       N               +     
Sbjct: 173 NVRIGGERQYAMKIWLNRQAMAARGITSSDIENTLRTENVELPAGEIESIDRDFTVRT-- 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A            +                ++    A      
Sbjct: 231 -----------------ARSYKDQRDFKNLVIKRGEEGYLVRLGEVADVKLEAADDESLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +A+ +    ++ A      ++              +      S S 
Sbjct: 274 RGNGRNMIGLGIVKQAKANTLTVVDNARSELEKIKRNLPEGTTIQDSYDSSVFIKESISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI  GLV++V+F+ +   +  L+   ++ + ++ +   L  +G ++ L ++  +V
Sbjct: 334 VYSTLAISMGLVVLVIFLFLGNIRATLIPAVTVPVALVGSFMFLLAMGYSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I       +    +   G       I  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVMLENIHRRIELGEPPLLAAYRGAREVGFAIVATTLVLISVFVPLVFMD 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FA+ +  ++  S  TA+++  A+   +++     +     + R F   +  
Sbjct: 454 GRIGALFTEFAMAVSAAVFFSSVTALTLAPALCSKVLKVSDKPNKFSQWMDRQFTKIEVS 513

Query: 539 AI-----QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                     R     V + +   +     L         + +G   + +          
Sbjct: 514 YRNSLSTNITRKWGLMVSLLLAGFVSYSLFLQVPSELTPKEDRGTFFIMMSGPEGASYEN 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
             +N+  ++   + +         LVR+ 
Sbjct: 574 NAANMAKIEERLMPYSQAGELSRVLVRVP 602



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 63/156 (40%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I++     + +  +F+ +      + T+ L +   +      G+  N+ +   ++ LIG 
Sbjct: 856  ILALTVTFLVLAAQFESFMHPFVIMLTVPLGLMGAMFGLWATGLTLNIYSQIGIVMLIGL 915

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +      +L    + F + I ++  + L   + TS+   +S +P+      
Sbjct: 916  SAKNGILIVEF---TNQLRDKGVEFSEAILQAATQRLRPIIMTSLTTVMSSVPLVFASGP 972

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +  G++V+   ++F+       +  
Sbjct: 973  GAESRMVIGVVVFTGVIVSTLLTLFVVPAAYYALSK 1008



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 76/208 (36%), Gaps = 11/208 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IR 687
                 LE +K+ + E   +    ++ +   +   E+     + + +  + + +++  IR
Sbjct: 298 DNARSELEKIKRNLPEGTTIQDSYDSSVFIKESISEVYSTLAISMGLVVLVIFLFLGNIR 357

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                A+     L+      L      G   NL  + A++  IG  V+D +V+ + +   
Sbjct: 358 ATLIPAVTVPVALVGSFMFLLA----MGYSINLLTLLALVLAIGLVVDDAIVMLENIH-- 411

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +             +   E     V T++      +P+       G++   FA+ ++  
Sbjct: 412 -RRIELGEPPLLAAYRGAREVGFAIVATTLVLISVFVPLVFMDGRIGALFTEFAMAVSAA 470

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++ +++ +A  +   +     K  +
Sbjct: 471 VFFSSVTALTLAPALCSKVLKVSDKPNK 498


>gi|160889588|ref|ZP_02070591.1| hypothetical protein BACUNI_02014 [Bacteroides uniformis ATCC 8492]
 gi|317480078|ref|ZP_07939189.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
 gi|156861105|gb|EDO54536.1| hypothetical protein BACUNI_02014 [Bacteroides uniformis ATCC 8492]
 gi|316903755|gb|EFV25598.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
          Length = 1037

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/688 (12%), Positives = 186/688 (27%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LGILPIAQYPDITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAQTVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++      D      +  S       +DQ+   
Sbjct: 111 RVSVAQSSLPTPVVVQGVTVQKQSSNIVMFLTMTSDSKDYDGLYLSNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
                          +    DP+ +R    + A +       N        G     D+ 
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPAAMRIRYLSPADVYQAIQSQNVEVSAGNVGQPIGTDNK 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  K  ++                +    I   E G +        +I    A 
Sbjct: 231 NAYQYSLTVKGRLT-------------SPEEFGNIILRTETGGKILRLRDVAHIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YSVVSQLDGKPTAAIAIYQQPGSNSLDVSKGVKAKMQELSQNFPAGIQYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA++SL G ++   +
Sbjct: 338 ASIDEVMVTFLETTLLVVLVIFLFLQNWRAVVIPCITIPVSLIGTLAVMSLFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           +   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENSTRLLDTGRYTSRQAVTEAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPL 528
            T ++    G   + FA+T+  S ++S F ++++  A+   +++  +          N L
Sbjct: 458 PTTLVSGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALMLQPTRPSKNPLYRGFNHL 517

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL--NYGIDFKGGIQLGVLAN 586
                      ++++  R     +S         LLF          +  G     V   
Sbjct: 518 YDKTQGVYDRIVEYLLQRPVASIVSYAVFTLIAVLLFVKWPSTFVPEEDDGYFLAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  + +     S+                 G+         ++K       
Sbjct: 578 PASSLERTQAVGKQINKILDSYPEIKDYIGISGFSVMGGGEQSNAATYFIVLKNWNERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T +            +    I  ++
Sbjct: 638 KEHTAEAVVQRFNMEVYGIQEAEIFAMV 665



 Score = 42.4 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 16/132 (12%), Positives = 38/132 (28%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L S     +S  +        +  Q           V   +++             T  
Sbjct: 272 DLGSASYSVVSQLDGKPTAAIAIYQQPGSNSLDVSKGVKAKMQELSQNFPAGIQYNVTLD 331

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +    +  +  + + +L+       W   +    T+ + +  TL   +LFG 
Sbjct: 332 TTDVIHASIDEVMVTFLETTLLVVLVIFLFLQNWRAVVIPCITIPVSLIGTLAVMSLFGF 391

Query: 717 EFNLTAVAAVLT 728
             N   +  ++ 
Sbjct: 392 SINTLTLFGLIL 403


>gi|225630008|ref|YP_002726799.1| Preprotein translocase, SecD subunit [Wolbachia sp. wRi]
 gi|225591989|gb|ACN95008.1| Preprotein translocase, SecD subunit [Wolbachia sp. wRi]
          Length = 502

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 185/518 (35%), Positives = 297/518 (57%), Gaps = 26/518 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                      IC   L I LPNF    +       + K RI+LGLDL+GG+ L+L +D 
Sbjct: 4   RLIVKSFSVLCICLFALYITLPNFFDNKL------FISKKRINLGLDLKGGASLLLNIDL 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           D +    L M ++E++  L  + I   +++       ++  +    +  +  +       
Sbjct: 58  DFYFKEKLSMLANEIKETLLTKNI-ESNVQNS----VITLNNIDDYKKASVLIN------ 106

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                     NL +   +  I I    +  + +IS    +S+  +++R+D++G  E ++Q
Sbjct: 107 ------AINPNLELNRKDSSILISYKPHYKNSLISEVAAESINNVQRRLDKLGTKEVSVQ 160

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM--FGVRFLRDSDGNQ 240
           + G ++IL+Q+PG +D  +++ LLG TAK++FH    N +K   +       L+DS GN 
Sbjct: 161 KQGQNKILVQVPGVEDTKQIKSLLGKTAKLAFHLANTNIAKVQDIDHETTVMLKDSLGNS 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +  K EI G  L  A+  F      P V   FD + ++RF ++T++N+GKP A+VLD 
Sbjct: 221 YPIFRKTEIGGDSLVNASVRFGNLGK-PTVHFKFDSIASKRFAKITKENVGKPFAIVLDN 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            VLT P I + I +G+ +ISGNFT + A  LA +L++G+LP  L I+EE+N+G  LG +S
Sbjct: 280 TVLTVPTIREPILNGEGEISGNFTEKQASELAILLKSGALPAPLKIIEEKNIGPSLGEES 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  A    ++ + LF+I+ YGK G++A  ++F NV+L L++L+LL ATLTLP IAGI
Sbjct: 340 IKAGEMAATISIIAVALFIIITYGKLGVLASVALFSNVVLILSILTLLEATLTLPGIAGI 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+AVD+N+L+ ERIREE +  + V  +++ GF  A  TI DSNIT LIA  ++F  
Sbjct: 400 ALTVGMAVDANVLIFERIREEIKSGKRVERAIEEGFKNAIKTILDSNITTLIAAGIMFII 459

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           G GA+RGF++T+ + IL SMF+AI++ + ++   +  K
Sbjct: 460 GSGAIRGFSVTLSIGILCSMFSAITVTKLLIELCMNPK 497



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  E I+ G +   IS IA+ ++I I +     + A   L  ++   L    L    
Sbjct: 332 GPSLGEESIKAGEMAATISIIAVALFIIITYG-KLGVLASVALFSNVVLILSILTLLEAT 390

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A +   +G +V+  V++++R+R+ +K           I++     +   + +++
Sbjct: 391 LTLPGIAGIALTVGMAVDANVLIFERIREEIKSGKR---VERAIEEGFKNAIKTILDSNI 447

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              I+   M + G   I  F++ ++ GI+ +  S+I + 
Sbjct: 448 TTLIAAGIMFIIGSGAIRGFSVTLSIGILCSMFSAITVT 486


>gi|168334723|ref|ZP_02692855.1| protein-export membrane protein SecF [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 300

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/300 (27%), Positives = 154/300 (51%), Gaps = 11/300 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGL------NYGIDFKGGIQLGVLANRPVDLSV 593
           + +++ R     IS++        +  + +      NY I+F GG  L +      ++  
Sbjct: 1   MNYIQNRKIFFSISLILIAICFAAMGINYVSGRGLLNYDIEFSGGSILHLDLMTDFNVET 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
               L    +GD S           + +  +  D+  +T  ++ V+K++   +  + I  
Sbjct: 61  EIMPLVIEYLGDDSAVIQLVPDTHQIMITTKTTDATMRTEFVKQVQKEL--NLTENIILA 118

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
            + V P IS EL    +  +++ +I MLIYIW+RFK + F   A+  L+ D+   L  +A
Sbjct: 119 EDSVSPTISTELQANAMYAIVLGSILMLIYIWVRFKDFKFGAAAVVALVHDVLIMLFVYA 178

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           +F +  N + +AA+LT+IGYS+ND ++V+DR+R+N ++     S  ++I+KSI++TL RS
Sbjct: 179 VFRVPINNSFIAAILTIIGYSINDTIIVFDRIRENRRVI--GGSDEEVINKSISQTLTRS 236

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + TS+   I V  + + G + +  FA P+  G++    SSIFIA+P+   +     +  +
Sbjct: 237 INTSITTLIMVALLNICGTASVRXFAFPLVIGVISGTYSSIFIASPVWFEMRKIAKRMRK 296


>gi|262276435|ref|ZP_06054244.1| protein-export membrane protein SecD [Grimontia hollisae CIP
           101886]
 gi|262220243|gb|EEY71559.1| protein-export membrane protein SecD [Grimontia hollisae CIP
           101886]
          Length = 585

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 147/509 (28%), Positives = 254/509 (49%), Gaps = 32/509 (6%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +   PS +       I LGLDLRGG   +L+VD     +      +D++R   ++  +  
Sbjct: 92  VPAAPSWLLDMGFKPIKLGLDLRGGVQFLLDVDMQQVFHAHATQAADDIRDHARELRVRG 151

Query: 89  FSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
             ++   +  + +       +  +   +       +           +    +  +   L
Sbjct: 152 VRVQVNSDGNVKIVAPSGHAESELRQFLREQYPQWD-----------VKGQGDNTLIASL 200

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
            +     + +  ++Q+++ +R RI+++GI+E+ +QR G HRI I+LPG QDP+  + ++G
Sbjct: 201 KETEKQTLTNLTVQQNLQTMRSRIEELGITEAAVQRQGDHRIRIELPGVQDPAAAKNVIG 260

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
            TA ++F++V           G   + + DG    V  K  +SG H+  A A+       
Sbjct: 261 ATASLAFYEV-----VSDSKPGSIVIHEQDGRPVHVNRKPVLSGDHIVDARASMGEMGMP 315

Query: 268 PVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316
            V        G            +       +              + +    Q+    +
Sbjct: 316 EVNISLDSTGGKKMSDFSAKHIGKPMATAYSEYSRNAEGKAEQTTSIISVATIQSQLGNR 375

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
            +I+G  T+  A  LA +LRAGSL   + IVEER +G  LG+++I  G  A+  G+ L +
Sbjct: 376 FRITGVGTLSDAQDLALLLRAGSLTAPVTIVEERTIGPSLGAENIQNGFAALAMGMGLTL 435

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVN 435
           LFM V Y K G VA+ ++ +N+++ + L++LL  A LTLP IAG+VL +G+AVD+N+L+ 
Sbjct: 436 LFMAVWYRKLGWVANLALIINMVMLIGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIF 495

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERI+E+ R+ +S+  S+D+GFS A++TI DSNIT LI+   L+  G G ++GFA+T+GL 
Sbjct: 496 ERIKEKIREGRSLAQSIDLGFSSAFATILDSNITTLISAATLYAIGNGPIQGFALTLGLG 555

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +L SMFT I   RA++  +      + + 
Sbjct: 556 LLTSMFTGIFASRAVINLVWGKDSRRGVR 584



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 94/241 (39%), Gaps = 5/241 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    N E       S  +    ++ L       G           +  +   +    TI
Sbjct: 346 SEYSRNAEGKAEQTTSIISVATIQSQLGNRFRITGVGTLSDAQDLALLLRAGSLTAPVTI 405

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +GP +  E I+ G   + +     L+++ + ++      A   LI+++   +G  
Sbjct: 406 VEERTIGPSLGAENIQNGFAALAMGMGLTLLFMAVWYR-KLGWVANLALIINMVMLIGLI 464

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           AL  G    L  +A ++  +G +V+  V++++R+++ ++      S    ID   +    
Sbjct: 465 ALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKEKIRE---GRSLAQSIDLGFSSAFA 521

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             + +++   IS   +   G   I  FA+ +  G++ +  + IF +  ++  ++   ++ 
Sbjct: 522 TILDSNITTLISAATLYAIGNGPIQGFALTLGLGLLTSMFTGIFASRAVINLVWGKDSRR 581

Query: 831 A 831
            
Sbjct: 582 G 582


>gi|91775945|ref|YP_545701.1| hydrophobe/amphiphile efflux-1 HAE1 [Methylobacillus flagellatus
           KT]
 gi|91709932|gb|ABE49860.1| Hydrophobe/amphiphile efflux-1 HAE1 [Methylobacillus flagellatus
           KT]
          Length = 1037

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 84/677 (12%), Positives = 189/677 (27%), Gaps = 34/677 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I      +A      Q  + ++P   P   +                  
Sbjct: 8   RPIFASVVSIIIV-----LAGLAAALQLPIAQYPQIAPPTVM---------VTATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  S ++       S        IT++F      +     V+  +  
Sbjct: 54  AETLAKTVAAPIEEQLSGIEGLLYYQSSADSSGTLTITVTFETGTDVDQATFNVSNRVNI 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  L+        ++             +  S       +D++   +   
Sbjct: 114 ATPRLPEDVRRTGLIVQKRSNDILMALMLVSPNKTYDPLYLSNYATINVLDELKRIKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P ++ QL  TT+ ++      N        G     D     Y
Sbjct: 174 DVTVFGTQDYSMRIWLRPDKMAQLGVTTSDIAAAIASQNAQYAAGRIGQDPAPDDQQIVY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +              +  +    I          +      I           
Sbjct: 234 TVTAKGRL-------------IEPEQFANIIVKANGPRGVLYLKDVARIELGAQNYNIRT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +   T E        L+          +          S   
Sbjct: 281 TLQGQPGVGIPVFLQTGANALDTAEAIKAKMEELKQRFPEDMDYRIPYDTSDFVKASIGE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  L+   ++ +++I T A L L G ++   ++  +V
Sbjct: 341 VVHTLGEAMILVVLVVFLFLQSWRATLIPIIAVPISLIGTFAGLWLFGFSINTLTLFAMV 400

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E I    +++  S   +      +    +    +      + + F 
Sbjct: 401 LAIGIVVDDAIVVLENIERLMSQEKLSPLNAAIKSMQQVSGAVVAIVLVLCAVFIPVAFM 460

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
           G   G   R FA+T+ +S++IS   A+++  A+   +    + + K           L  
Sbjct: 461 GGIAGELYRQFAVTVAVSVVISGIVALTLTPALCAILLKHAHGESKFFRPFNRGFDKLTN 520

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              ++  +  R   +G  +   I          +  G          V A    D + + 
Sbjct: 521 FYTSVVGVTLRHRIIGACVFVGIIIAGAYLFRTVPTGFVPPEDQGYVVTAAIMPDGASLS 580

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              ++++    +        +  V   +       +T    M  +        +T +   
Sbjct: 581 RTSKTMENVRKTIAEDPAVASQFVINGFDLIGGGNKTSAATMFVRLKDWDDRTTTAEQIV 640

Query: 656 IVGPKISRELIRKGIVG 672
                I         + 
Sbjct: 641 QRLFGIGMMQPDGMAIA 657



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 59/147 (40%), Gaps = 5/147 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  I  + + +  T     LFG   N   + A++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPIIAVPISLIGTFAGLWLFGFSINTLTLFAMVLAIGIVVDDAIVVLENI--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S  +   KS+ +  G  V   +      +P+A  G   G +   FA+ +A  +
Sbjct: 420 LMSQEKLSPLNAAIKSMQQVSGAVVAIVLVLCAVFIPVAFMGGIAGELYRQFAVTVAVSV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           V++   ++ +   +   +       ++
Sbjct: 480 VISGIVALTLTPALCAILLKHAHGESK 506



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 10/162 (6%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               I     + + + + +  +F+ W   L  I  +   +   L      G+  ++     
Sbjct: 863  NAAIFAFSFAIVMVFLILAAQFETWALPLAVIMAVPFALVGALLAVMFRGMPNDIYFQIG 922

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++TL+G +  + +++ +      +     +  +    ++        V TSMA  + ++P
Sbjct: 923  LVTLVGLAAKNAILIVEFA---SQKLEEGLPLKQAAIEAAKLRFRPIVMTSMAFVLGIVP 979

Query: 786  MAVWGGSVI---GSFAIPMAFGIVVAAS-SSIFIAAPILLFI 823
            + V  G+      S    +  G+++A   ++IFI  P+    
Sbjct: 980  LVVASGAGAAARQSMGTGVFGGMLMATFIATIFI--PMFFTW 1019


>gi|114046587|ref|YP_737137.1| preprotein translocase subunit SecF [Shewanella sp. MR-7]
 gi|113888029|gb|ABI42080.1| protein-export membrane protein SecF [Shewanella sp. MR-7]
          Length = 294

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 151/288 (52%), Gaps = 9/288 (3%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +   + R+    ISI   + S+ ++   G N+G+DF GG+   V  +R +  S ++ 
Sbjct: 1   MKNLNLTKWRYVSSAISIFLMLASLTIIGMKGFNWGLDFTGGVVTEVQLDRRITSSELQP 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +    +++  +      +++R         A T    +   +    +    + NT I
Sbjct: 61  LLNAAYQQEVTVISASEPGRWVLRY--------ADTAQSNVDIAQTLAPLGEVQVLNTSI 112

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VGP++ +EL  +G + ++++ +A+L Y+  RF+W  A GA+  L+ D+   L FFAL  +
Sbjct: 113 VGPQVGKELAEQGGLALLVAMLAILGYLSYRFEWRLASGALFALVHDVIFVLAFFALTQM 172

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT +AAVL ++GYS+ND +++ DR+R+ +      ++ +++ +++I  T  R++ TS
Sbjct: 173 EFNLTVLAAVLAILGYSLNDSIIIADRIRELLIAKPK-LAIQEINNQAIVATFSRTMVTS 231

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               ++V  + + GG  +  F+I M  GI+    SSI +   +  F+ 
Sbjct: 232 GTTLMTVGALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPEFLG 279


>gi|285017161|ref|YP_003374872.1| rnd superfamily protein [Xanthomonas albilineans GPE PC73]
 gi|283472379|emb|CBA14884.1| probable rnd superfamily protein [Xanthomonas albilineans]
          Length = 1042

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/583 (12%), Positives = 162/583 (27%), Gaps = 33/583 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
                ++  +I  IG+L           ++R+P   P                       
Sbjct: 9   PMVAWVMAIVIVLIGMLAI-----HALPVERYPQMAPPTIT---------VRATYNGASA 54

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGV 122
             V   +    ++ +  L        +       ++ L F      +    +V   LQ V
Sbjct: 55  QTVENTVTQLIEQSQQSLDHLLYMTSTSASDGTAQVNLVFQTGTNPDTAQVQVQNQLQSV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    ++N L+ T        +     D     + + +  +  +  DQI        
Sbjct: 115 MSILPQAVQQNGLIITKSSGSLFEVVAFTSDDGSMDSFDVANYMESRIDDQISRISGVGN 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +LR+     + +       N        G +           
Sbjct: 175 IQPIGS-EYAMRIWLDPEKLRKYALMPSDVENALQSQNTDVSAGELGGQPSLRGQRLDAT 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V  +  +                 +    +   +             IG           
Sbjct: 234 VTTRSRL-------------QTPAQFGAIVLKSDPDGAAVHLSDVARIGLGPETYGTLSR 280

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +     +        L+          V   +    + S    
Sbjct: 281 FNGKPSASLGIELNSDANAVEVSKAIEKRLGELKQYWPHGYNYHVAFSSTPFVITSIKEV 340

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV+ V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++  +VL
Sbjct: 341 VITLIEAVLLVVAVMYLFLQNWRATLIPTIAVPVVLMGTFGVLAAFGYSINTLTMFAMVL 400

Query: 423 GIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
            IGL VD  I+V E +     ++  S   +      +    +    +      V + FF 
Sbjct: 401 AIGLLVDDAIVVVENVERVMGQEGLSPKEATLRSMQQIGGALIGIVLVLTAVFVPMAFFN 460

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F+IT+  S+++S+  A+++  A+ + I++        I    R        
Sbjct: 461 GVTGVIYRQFSITIAASMILSVLVAMTLTPALCVTILKPLHQGEAPIGSHGRLGWFFIWF 520

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +F         +           L  + L   +      +L
Sbjct: 521 NTRFRHMSERYRAVVERVLGQRALGLLAYALLLVVTGVLLWRL 563



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 82/238 (34%), Gaps = 5/238 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R  L     G +S  N     +  + L            + + + +          
Sbjct: 263 SDVARIGLGPETYGTLSRFNGKPSASLGIELNSDANAVEVSKAIEKRLGELKQYWPHGYN 322

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                   P +   +    I  +    + + +       W   L     + + +  T G 
Sbjct: 323 YHVAFSSTPFVITSIKEVVITLIEAVLLVVAVMYLFLQNWRATLIPTIAVPVVLMGTFGV 382

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            A FG   N   + A++  IG  V+D +VV + +     +    +S ++   +S+ +  G
Sbjct: 383 LAAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMGQEGLSPKEATLRSMQQIGG 440

Query: 771 RSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +   +      +PMA + G   VI   F+I +A  ++++   ++ +   + + I  
Sbjct: 441 ALIGIVLVLTAVFVPMAFFNGVTGVIYRQFSITIAASMILSVLVAMTLTPALCVTILK 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 79/273 (28%), Gaps = 20/273 (7%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +       V +S   ++  +     +   N         + +     
Sbjct: 776  HTRMAPQDVERWTVRNTGGDMVPMSAFTTSRWTSAPAALERYNGVSAMELTGQARLGVSS 835

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-I 686
              A   + E+ K+         +    +              +  +  S + + + +  +
Sbjct: 836  GAAMDEMAELSKQLPHGFGYAWSDMAYQEKLSANQAP----ALYAI--SLLFVFLCLAGL 889

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               W      +  + + I   +    L G+E ++     +LT +G S  + +++ +  R 
Sbjct: 890  YESWSIPFAVMLAVPVGIFGAVLLMTLRGLENDVYFQVGLLTTVGLSAKNGILIVEFARD 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
               L     S       ++   L   + TS+A  + VLP+      G +   S       
Sbjct: 950  ---LEHRGESLLAATLHAVQMRLRPILMTSLAFLLGVLPLMFSHGAGSAARHSLGT---- 1002

Query: 804  GIVVAASSSI---FIAAPILLFIYDWRAKNARI 833
            G+     +SI       P+   I        R+
Sbjct: 1003 GVTGGTLASITLGLFFVPLFYVIVRRLFPERRV 1035


>gi|20807645|ref|NP_622816.1| preprotein translocase subunit SecF [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479348|ref|ZP_05092685.1| protein-export membrane protein SecF [Carboxydibrachium pacificum
           DSM 12653]
 gi|20516189|gb|AAM24420.1| Preprotein translocase subunit SecF [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034714|gb|EEB75451.1| protein-export membrane protein SecF [Carboxydibrachium pacificum
           DSM 12653]
          Length = 303

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 74/292 (25%), Positives = 142/292 (48%), Gaps = 4/292 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               I  +        IS +  +  I  +F +G N+GIDF GG  +     +P D   + 
Sbjct: 4   HRFHIDVIGKTKIWFTISGIMILIGIIAMFVNGFNWGIDFTGGTIMEFKIGKPFDTKDII 63

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L   ++ D   Q    + + +        D      + E+   +    +  S +  ++
Sbjct: 64  KILNDYKVKDYQIQKIGTKGDHVSIKTSPISDQTRIAIIKEI---EKKYNLTESDLIMSQ 120

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  E+    I+ ++++++ ML Y+ IRF +  +L A+  L+ ++   +  +A+F 
Sbjct: 121 QVGPSLGAEIRSGMILALVVASLVMLTYLGIRFNFEMSLAAVIGLLHNVFILISVYAVFR 180

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I  +   +AA+LT+  YS++D +V++DR+R N+K+      + ++ + S+N+TL RS+  
Sbjct: 181 ITVDSPFIAALLTVFSYSLHDTIVIFDRIRDNLKVM-RRADYAEVANVSVNQTLVRSINV 239

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +   I +L M   G   +  FA+P+  GI   A SSIFI+ P+ + I +  
Sbjct: 240 VLTVLIMLLLMYFLGPKALKDFALPLLIGITWGAYSSIFISTPLWVLIKNRE 291


>gi|332284258|ref|YP_004416169.1| putative efflux system transmembrane protein [Pusillimonas sp.
           T7-7]
 gi|330428211|gb|AEC19545.1| putative efflux system transmembrane protein [Pusillimonas sp.
           T7-7]
          Length = 1064

 Score =  181 bits (458), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 77/686 (11%), Positives = 178/686 (25%), Gaps = 48/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L           + ++P   P               + ++   
Sbjct: 8   RPVFAWVIALAITLAGILALA-----NMPVSQYPEVAPPT-------------ISIQATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  +       + + L    G+  +          +I+ +FA     +     V  
Sbjct: 50  PGASADDVSKSVASVIENELNGATGLLYYESVSDSYGSAEISATFAPGTDPDMAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  + SKL     +  L  +      +++   +           +  I R   + +   
Sbjct: 110 RISNITSKLPAAVMQQGLKVSKSNSNFLMVVALSSTDGSMDQFALADYITRNIQNSVSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     + ++++             + G     DS 
Sbjct: 170 PGVGSFQLFAAPR-AMRIWVDPDKLTGYNLSMSEVNAAVGSQTALISAGILGSPPNPDSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    E+S +              +    I                 +       
Sbjct: 229 RVSAPIVVNGELSTVE-------------EYENIILRSNQDGSSVRIRDVARVEVGADSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G  L          S     +   T E        L           +          
Sbjct: 276 QFGARLNGKPTAAFAISLATNANALATAEGIKAQMDELSTFFPGNIEYSIPYDTTPYVEI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + + ++    ++ ++G ++ + S+
Sbjct: 336 SIEQVIHTLFEAMILVFVVMFVFLQNVRYTLIPALVVPIAILGAFGVMQVMGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +      +    +    +      + 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERIMVEEGISPKEATKKAMPQISGAVVGMTLVLATVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F  G      + F++ M +SI  S F A+S   A+   I     +K I      +   
Sbjct: 456 LAFMSGSVGVIYQQFSVAMAVSIAFSGFLALSFTPALCATI-----LKPIPKGHHEQKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   F +      G           ++  + +         ++L        D   
Sbjct: 511 FFGWFNKSFDKVTNRYEGWVGRSLKRGGRMMLVYLILVIAMGWMYLRLPTSFLPDEDQGY 570

Query: 594 VRSN--LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           V +N  L S    + +       + + + L         Q                    
Sbjct: 571 VVANIELPSGATANRAMDVIKKVEEYFMALPQMQNIVAVQGFSFNGNGLNSAIAFVPLKD 630

Query: 652 QNTEIVGPKISRELIRKGIVGVIISA 677
            +        ++ +  K    ++   
Sbjct: 631 FSERKGEEDSAQAISAKATQSLLFGL 656



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 83/235 (35%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V              +                 +++A    ++    +++   P 
Sbjct: 260 VRIRDVARVEVGADSYQFGARLNGKPTAAFAISLATNANALATAEGIKAQMDELSTFFPG 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +   +            I + I  +  + I + + +++  +   + L     + + I   
Sbjct: 320 NIEYSIPYDTTPYVEISIEQVIHTLFEAMILVFVVMFVFLQNVRYTLIPALVVPIAILGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G   + G   N+ ++ A++  IG  V+D +VV + +     +    IS ++   K++ +
Sbjct: 380 FGVMQVMGFSINVLSMFAMVLAIGILVDDAIVVVENV--ERIMVEEGISPKEATKKAMPQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LP+A   GSV      F++ MA  I  +   ++     +
Sbjct: 438 ISGAVVGMTLVLATVFLPLAFMSGSVGVIYQQFSVAMAVSIAFSGFLALSFTPAL 492



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/287 (10%), Positives = 96/287 (33%), Gaps = 12/287 (4%)

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
                 F             +          + + A      +V  ++  +        Q 
Sbjct: 754  SFVAKFPNMGWIQNVWVQADQDHRMDVADIMKLNAINNQGEAVPLASFVTADWEQGPVQV 813

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                    +RL        +  + ++ +++ + E+      +          ++   + I
Sbjct: 814  VRYNSYESIRLGGAAAPGYSSGQAMDEMQRLVAELPAGFGYE--WTGLSYQEKQAGSQSI 871

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              + ++ + + + +   ++ W   +  +  + L +   +G     G+  ++     ++T+
Sbjct: 872  YLMALAMLVVFMVLAALYESWAIPVSVMLMVPLGMLGAVGIVTALGMSNDVYFTVGMVTV 931

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG +  + +++ +  +     Y       D   ++        + TS A  + V+P+A+ 
Sbjct: 932  IGLAAKNAILIVEFAKD---TYAQGGDIIDATVEAARLRFRPILMTSFAFILGVVPLAIA 988

Query: 790  GGSVIGSFAIPMAFGIVVAASSS-----IFIAAPILLFIYDWRAKNA 831
             G+   S    +  G+V    ++     +F+    ++ +  ++ K  
Sbjct: 989  TGASSASQN-AVGRGVVGGMLAATPLAMLFVPTFFVVVMGAFKVKPK 1034


>gi|222110156|ref|YP_002552420.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Acidovorax ebreus TPSY]
 gi|221729600|gb|ACM32420.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax ebreus TPSY]
          Length = 1077

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 72/585 (12%), Positives = 160/585 (27%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P   P + +                  
Sbjct: 10  RPIFAGVLSVLIFLAGLIA-----LRALPISEYPEVAPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   + M  +E  + ++                +T++FA     +     V   +  
Sbjct: 56  PKVIAETVAMPLEESINGVEGMLYMGSQATTDGVMTLTVTFALGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  L T        ++                   +    D++   +   
Sbjct: 116 AEPRLPEEVRRLGLTTVKSAPDLTMVVHMVSPNGRYDIDYLRNYAVLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   + + +       N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLPGVDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    I                 +    A      
Sbjct: 236 SINAQGRLTTEE-------------EFGDIIVKTGEDGAVTRLRDVARLELGAADYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +            A L+          +          S   
Sbjct: 283 LLNNDPAVGMGVFQAPGSNALDISTNVRATMAELQKNMPEGVEFRIAYDPTQFVRASIKS 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++V+ T A+L LLG ++   S+ G+V
Sbjct: 343 VIQTLLEAVALVVIVVILFLQTWRASIIPLLAVPVSVVGTFAVLHLLGVSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   +++        +       F     
Sbjct: 463 GLTGQFYRQFAVTIAISTVISAINSLTLSPALSALLLKGHHEPKDALTRGMDRAFGGFFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R      G           +L  +    G+ +     +
Sbjct: 523 RFNHVFHRGSQAYSGGVRRVVGRKALMLAIYLALVGVTWGLFKAV 567



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 66/163 (40%), Gaps = 7/163 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               ++   I+ + + + +  +++     +  I  + + +   +    L G + N+     
Sbjct: 879  NSAVLVFPIAILLVFLVLAAQYESLTLPIAIILIVPMGLLAAMTGVWLSGGDNNVFTQIG 938

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G S  + +++ +  R+   L  +  +      ++    L   + TS+A  + VLP
Sbjct: 939  LIVLVGLSAKNAILIVEFARE---LEFSGRTPVQAAIEASRLRLRPILMTSLAFVMGVLP 995

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + +    G  +  +  + +  G++   +  +F+     + +  
Sbjct: 996  LVLSTGAGSEMRSAMGVAVFAGMIGVTAFGLFLTPVFYVALRR 1038



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 85/228 (37%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L +     +      G     +    +   +  Q  + E V+ +I      
Sbjct: 275 AADYALRSLLNNDPAVGMGVFQAPGSNALDISTNVRATMAELQKNMPEGVEFRIAYDPTQ 334

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + V   +   +    IV ++               W  ++  +  + + +  T 
Sbjct: 335 FVRASIKSVIQTLLEAVALVVIVVIL-----------FLQTWRASIIPLLAVPVSVVGTF 383

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               L G+  N  ++  ++  IG  V+D +VV + + +N++     ++ R+   +++ E 
Sbjct: 384 AVLHLLGVSINALSLFGLVLAIGIVVDDAIVVVENVERNIEA---GLTPREATYRAMREV 440

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            G  +  ++      +P+A      G     FA+ +A   V++A +S+
Sbjct: 441 SGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTVISAINSL 488


>gi|327394900|dbj|BAK12322.1| acriflavine resistance protein B AcrB [Pantoea ananatis AJ13355]
          Length = 1033

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 71/551 (12%), Positives = 148/551 (26%), Gaps = 41/551 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL       P+  +  +PS  P               + +    
Sbjct: 8   RPVFAWVIAVFIILFGLLSI-----PKLPVALYPSVAPPT-------------ISITASY 49

Query: 63  DDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L            S       IT++FA     E     V  
Sbjct: 50  PGSTPETMNNSVVALIERELSSAKHVLYYESSSDTSGMASITVTFAPGTDPELAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ +  +L    ++N L         +++             + S    R   +++   
Sbjct: 110 RIKVIEPRLPQAVRQNGLSVEASGANFLMIVGLTSKDGKLTEADLSDYFSRNITEELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP +L Q   T + +S      N        G        
Sbjct: 170 EGVGRVQLFGA-EKAMRVWVDPVKLSQYRLTVSDISRAINTENTQIAPGRTGDAPAVAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +  K ++                 +             R        +       
Sbjct: 229 QVSYPLLVKGQLG-------------SPQEFASITLRANPDGSRVVLSDVARVELGSQTY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                    V   A        +   T E   +    LR          +          
Sbjct: 276 SFATRENGRVSTAAAIQLSPGANAVKTAERIKLRLNELRQAMPEGMAYSIPFDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++  +      + ++ T  ++ L G ++ + ++
Sbjct: 336 SIEKVIHTFIEAMILVFLVMYLFLQNVRYTFIPAIVAPIALLGTFTVMLLAGFSVNVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERIMTEEGLGPKAATQKAMKEITGAVIGITLVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +    G      R F ++M +SILIS F A+S+  A+   +++     +        +F 
Sbjct: 456 MAMASGSVGAIYRQFTLSMAVSILISAFLALSLTPALCATLLKPVDRHAHQKKGFFGWFN 515

Query: 534 IPDCIAIQFMR 544
                      
Sbjct: 516 HKFAAMTYLYG 526



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 89/247 (36%), Gaps = 14/247 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       Q    + +                 ++V     +++   ++ + +
Sbjct: 258 SRVVLSDVARVELGSQTYSFATRENGRVSTAAAIQLSPGANAVKTAERIKLRLNELRQAM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I K I   I + I + + +++     R+ +  A+ A   L 
Sbjct: 318 PEGMAYSIPFDTTPFVKISIEKVIHTFIEAMILVFLVMYLFLQNVRYTFIPAIVAPIAL- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T     L G   N+  +  ++  IG  V+D +VV + +     +    +  +   
Sbjct: 377 ---LGTFTVMLLAGFSVNVLTMFGMVLAIGIIVDDAIVVVENV--ERIMTEEGLGPKAAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            K++ E  G  +  ++      +PMA+  GSV      F + MA  I+++A  ++ +   
Sbjct: 432 QKAMKEITGAVIGITLVLSAVFIPMAMASGSVGAIYRQFTLSMAVSILISAFLALSLTPA 491

Query: 819 ILLFIYD 825
           +   +  
Sbjct: 492 LCATLLK 498



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
               G    ++   +  + +++S + + + +   ++ W   +  +  + L +   +   +L
Sbjct: 852  WTGGSLQEQQSASEAPMLMVLSMLVVFLVLAALYESWSVPVSVMLVVPLGLLGAVIAVSL 911

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
              ++ ++     ++T+IG S  + +++ +  +   +++       +   ++    L   +
Sbjct: 912  MDMQNDVFFKVGMITIIGLSAKNAILIVEFAK---QMHEGGKGLVEATLEASRMRLRPIL 968

Query: 774  YTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS+A  + V+P+ +  G+   +       +  G++     +IF        +     K 
Sbjct: 969  MTSLAFTLGVVPLILASGASARTQQAIGSGVFGGMISGTLLAIFFVPLFYFSVMKAVEKL 1028

Query: 831  A 831
             
Sbjct: 1029 K 1029


>gi|192291677|ref|YP_001992282.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris TIE-1]
 gi|192285426|gb|ACF01807.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris TIE-1]
          Length = 1046

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 84/687 (12%), Positives = 186/687 (27%), Gaps = 44/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                  L  +I  +G L  +     +  + ++P  +P               + +    
Sbjct: 9   RPVLSNTLAFLIVLLGALALM-----RLPVSQYPDVVPPT-------------VSVSATY 50

Query: 63  DDFVNGF-LQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                   +   +  +   +   EG+         +    + ++F            V  
Sbjct: 51  PGASARTVMDSVALPIEQQVNGVEGMIYMQSTSASDGSYNLVVTFDIGTDPNMAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   +++L        L    +    +              +  +        +++   
Sbjct: 111 RVSLASAQLPTSVSTQGLNIKKKSTAILQFVSLVSSDGRYDNLFLANYAKINIQNELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L+    T + +       +N     + G        
Sbjct: 171 PGVGDVSVLGSGSYAMRIWLDPDKLQSYGLTPSDVISAVQQQSNQVTAGLVGGPPAPSIV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY ++     +                + +V  + D+ G +         +    +  
Sbjct: 231 NFQYALDVVGRFNAA-----------TDFEKIVVKAVDQGGGQLVRIGDIGRVELGASSY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          S     +     E        +           V   +      
Sbjct: 280 GQNATLDGKPSAAIAISLLTGANALSVAEAVNAKMKEMAGSFPAGLDYKVSFDSTKFITA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I A LVL+V+ M +   +  LV   ++ + +I   A +S +G T+   S+
Sbjct: 340 SVDEVYETLIIAAVLVLVVILMFLQDWRAMLVPATTVPVTIIGAFAAMSAMGFTVNTTSL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIAT 474
             +VL IG+ VD  I++ E +        S   +     S  +  I       +   +  
Sbjct: 400 FALVLAIGIVVDDAIVIVEGVSRHIAGGMSSREAAVKAMSELFGPIIGITLVLMAVFLPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   + FA+ +  + LIS   A+++        +R              F  +
Sbjct: 460 AALPGLTGKMYQQFALVIAATALISAVNAVTLKPTQCALWLRAPVPPEQRGIVYRVFNAV 519

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  +       V  SI  +I  + L+       G+ F G  ++        D    
Sbjct: 520 YARCEAVYAALIRRLVAFSIPTTIVGLALV-------GVAFYGLSRVPTAFLPSEDQGYF 572

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +L+          +    K   +  +    +SV     +  +    T           
Sbjct: 573 IISLKLPDAASAGRSDAAVAKAVELVRKTPGVESVIGVSGISPLDNNATMYNAGMLYVVL 632

Query: 655 EIVGPKISRELIRKGIVGVIISAIAML 681
                + +++L    I   + +A+A L
Sbjct: 633 HDWDQRKTKDLSIDAIAAKVRAALAQL 659



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 75/188 (39%), Gaps = 9/188 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    ++ +       +      ++         E+    I+  ++  + +L+++    
Sbjct: 308 EAVNAKMKEMAGSFPAGLDYKVSFDSTKFITASVDEVYETLIIAAVLVLVVILMFLQ--- 364

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       +  G   N T++ A++  IG  V+D +V+ + +    
Sbjct: 365 DWRAMLVPATTVPVTIIGAFAAMSAMGFTVNTTSLFALVLAIGIVVDDAIVIVEGV---S 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +     +S R+   K+++E  G  +  ++      LP A   G        FA+ +A   
Sbjct: 422 RHIAGGMSSREAAVKAMSELFGPIIGITLVLMAVFLPAAALPGLTGKMYQQFALVIAATA 481

Query: 806 VVAASSSI 813
           +++A +++
Sbjct: 482 LISAVNAV 489



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/443 (10%), Positives = 125/443 (28%), Gaps = 32/443 (7%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
              ++  ++GI      A   N  +   +  +  + ++   S+D   ++  + +   +   
Sbjct: 604  VESVIGVSGISPLDNNATMYNAGMLYVVLHDWDQRKTKDLSIDAIAAKVRAALAQLDTAT 663

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
             +  +     G G   GF + + +    S F A+    A             I     + 
Sbjct: 664  ALVLMPPPIQGIGNTSGFTMMVEMKNGSSDFLAL--QNATEQLAANASTQSGITHAASTF 721

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN---- 586
               +     +                       L +  +N    F    Q+ V A+    
Sbjct: 722  KGNVKQLRLVVDRMKAETLGVTVGQVFSAVESYLGSTYVNQFTKFNNVFQVYVQADAPFR 781

Query: 587  ---------------RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                             +      + L       +           LV        S   
Sbjct: 782  LRPDDVLKLKVKGSGDQMVPVGAVAYLTDEVGPPLITLYNLYPAATLVGSPAAGFSSGEA 841

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
              ++  V  K       +           +  ++         ++ + +   +  +++ W
Sbjct: 842  MSLMSEVAAKSLPASMGTAWTGMSYQEQVVGDQI----YYVFAVALLLVYFVLAGQYESW 897

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + L +  T+      G+  +L     ++ LI  +  + +++ +  R+    
Sbjct: 898  LQPLAVILAVPLTLLGTVAALEWSGLPNDLYTQIGIVLLIALAAKNAILIVEYARE---K 954

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
                +   +   ++        + TS A    +LP+A+  G+  G   S  I +  G++ 
Sbjct: 955  CMEGMPIAEAAVEAARLRFRPILMTSFAFIFGMLPLALATGAGAGARVSLGIAVVAGMLA 1014

Query: 808  AASSSIFIAAPILLFIYDWRAKN 830
            +   ++         +     + 
Sbjct: 1015 STGLALLFVPAFFAVLQRMGTRR 1037


>gi|197120967|ref|YP_002132918.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Anaeromyxobacter sp. K]
 gi|196170816|gb|ACG71789.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Anaeromyxobacter sp. K]
          Length = 1056

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/691 (10%), Positives = 181/691 (26%), Gaps = 51/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  MI   G L  L        + ++P+  P               + +    
Sbjct: 8   RPIFAWVISIMIMLAGGLAIL-----GLPVSQYPAIAPPV-------------VTVFATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       +TL+F      +    +V  
Sbjct: 50  PGANAQTLENSVTQVIEQKMTGIDHLRYMSAASDSSGNASVTLTFEAEADPDIAQMQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +         ++++    +       + +       +DQI   
Sbjct: 110 KLQNAMPLLPQQVQQQGVRVLKTVSNYLLIAGLISEDGSMTRDDLNDYAFSNIVDQISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    D  +L     T   +S      N        G        
Sbjct: 170 TGVGEVTAFGTQ-YAMRIWLDADKLASFKLTPLDVSAALRAQNAQVSTGSLGAAPAVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 + +  +        +                
Sbjct: 229 QLNATVTSQTRL-------------QTPEQFLNILLRVNPDGSQVRLRDVGTANLGGETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +   T +      + L     P    +    +      
Sbjct: 276 ELESYYNGKPAGGMGIRLASGANALRTADLVRAKLSELSQYFPPGMKVVYPVDSTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+F+ +   +  L+   ++ + ++ T  +L+  G T+   ++
Sbjct: 336 SIEEVVKTLAEAIVLVFLVMFLFLQNFRATLIPTIAVPVVLLGTFGVLAAAGFTVNTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    + +  S   +      +    +    +      V 
Sbjct: 396 LGLVLAIGLLVDDAIVVVENVERVMSEEGLSPREATRKSMGQITGALVGIALVLAAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSI 523
           + FFGG      R F+IT+  ++ +S+  A+++  A+   I++                 
Sbjct: 456 MAFFGGSVGVIYRQFSITVVSAMALSVVVALTLTPALCATILKPVEKGHHAGETGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +        +    +     R     +  ++L +      L         + +G I   V
Sbjct: 516 NRLYGRGSGVYEKSVGWILRRTGRALIVYAVLLAALGGLFLHLPTGFLPEEDQGSIINMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  +   R+ ++ +    +  +  + E    +      G           +K    
Sbjct: 576 QLPAGATMDRTRTVMQEVTRHYLEDEKDNVEAVMAITGFSFSGRGQNAGLAFVRLKDWAE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                           +   ++        +
Sbjct: 636 RPKKEQHAPAIAGRAMRAFSQIKDGLAFAFV 666



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +  ++           +        +++    ++     ++++  
Sbjct: 258 SQVRLRDVGTANLGGETYELESYYNGKPAGGMGIRLASGANALRTADLVRAKLSELSQYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P        +      R  I + +  +  + + + + +++  + +   L     + + + 
Sbjct: 318 PPGMKVVYPVDSTPFVRISIEEVVKTLAEAIVLVFLVMFLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+
Sbjct: 378 GTFGVLAAAGFTVNTLTMLGLVLAIGLLVDDAIVVVENV--ERVMSEEGLSPREATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +PMA +GG   VI   F+I +   + ++   ++ +   +
Sbjct: 436 GQITGALVGIALVLAAVFVPMAFFGGSVGVIYRQFSITVVSAMALSVVVALTLTPAL 492



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 83/249 (33%), Gaps = 9/249 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V       +     +  +   G    + F+G    +++ +  PG S  +         K 
Sbjct: 789  VRNAGGQMVPFSSFSTGTWVYGPTKLERFNGSPAMVIQGEPSPGHSSGEAMAAMEEHVKA 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                        + +++  +A+     +   W      +  + L
Sbjct: 849  LPPGIGLEWSGLSYEERLSGANAPALYAISLLVVFLALA---ALYESWSIPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   + F  L G+E  +     +LT IG S  + +++ +  R    LY   +S  D   
Sbjct: 906  GVLGAVLFTELAGLEAGVYFQVGLLTTIGLSAKNAILIVEFAR---ALYEQGMSLFDAAV 962

Query: 763  KSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + VLP+      G +   +  + +  G++ A   +I +    
Sbjct: 963  EAARMRLRPIIMTSLAFILGVLPLAIANGAGAAGQNAIGVAVIGGMLSATFLAILLVPVF 1022

Query: 820  LLFIYDWRA 828
             + I   R 
Sbjct: 1023 FVKIAGKRK 1031


>gi|326315277|ref|YP_004232949.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372113|gb|ADX44382.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 1052

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/688 (11%), Positives = 177/688 (25%), Gaps = 49/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G +        +  + ++P+  P               + + V  
Sbjct: 8   RPIFAWVITIFIMVMGGISIA-----KLPIAQYPAVAPPT-------------IQVSVAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKK---EGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  L+      +   +           + +      I LSF      +     V  
Sbjct: 50  PGANAQTLEDSVLAVIEREMNGASGLAYVETTSQANGTGTIVLSFEPGTNADLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L     +  +     +   ++ +    +         +    R  + ++   
Sbjct: 110 RLSRATPRLPSAVTQQGVRVEQSRSNFLMFAMLTTENPDVSIEALNDYAARNVVPELQRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L+    +  +++      N        G        
Sbjct: 170 AGVGTLTQFGA-ERAMRIWVDPAKLKGFNLSLDQVNAAIRAQNVQVSAGNLGDLPAEQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K +++                +    +                 I       
Sbjct: 229 PVSATIVVKGQLNNAE-------------QFGNVVLRANTDGSTVRLKDVARIELGSQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +        L+         +V          
Sbjct: 276 STSARLNGKQAVGLGVQPTPSANALATAKAVKAKLEELKKFFPQGVSYVVPYDTSKFVSV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   ++ ++    + + ++ T   L  +G ++ + ++
Sbjct: 336 SIEKVVHTLIEAVVLVFIVMFLFLQNFRYTIIPTIVVPVALLGTFGALLAMGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +    +    +  +   V 
Sbjct: 396 FGMVLVIGIVVDDAIVVVENVERIMAEEGLPPLQATRKAMGQISGAVIGVTVVLISVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRF 531
           L FF    G   R FA TM  SI  S F A+S+  A+   +++                F
Sbjct: 456 LAFFAGSTGNIYRQFAATMATSIAFSAFLALSLTPALCATLLKPIDPDHHAEKKGFFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICS------ICLLFTHGLNYGIDFKGGIQLGVLA 585
                    ++       +  S    I        + L++T      +  +    +    
Sbjct: 516 NRSFKSTTHRYEGWLGKLLRRSGRMMIIYAVLLGAVALVYTRLPTSFLPNEDQGYIITNI 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             P   +  R++    Q+ D   +  + E    V      G          ++K      
Sbjct: 576 QLPAGAAQSRTSDVLHQVEDFMLKQPEVENIVTVAGFSFSGQGQNAGLAFVILKDWSERS 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +              +    I  +
Sbjct: 636 GAEHSAAAISGRAFMALSSIRDAFIFAL 663



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 80/210 (38%), Gaps = 6/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                  +++A  + ++   +++ +  P            K     I K +  +I + + 
Sbjct: 291 VQPTPSANALATAKAVKAKLEELKKFFPQGVSYVVPYDTSKFVSVSIEKVVHTLIEAVVL 350

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + I +++  + + + +     + + +  T G     G   N+  +  ++ +IG  V+D +
Sbjct: 351 VFIVMFLFLQNFRYTIIPTIVVPVALLGTFGALLAMGFSINVLTMFGMVLVIGIVVDDAI 410

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           VV + +     +    +       K++ +  G  +  ++      +P+A + GS      
Sbjct: 411 VVVENV--ERIMAEEGLPPLQATRKAMGQISGAVIGVTVVLISVFVPLAFFAGSTGNIYR 468

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            FA  MA  I  +A  ++ +   +   +  
Sbjct: 469 QFAATMATSIAFSAFLALSLTPALCATLLK 498



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 66/179 (36%), Gaps = 8/179 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G     +L   +  V    S +A+ + +   ++ W   
Sbjct: 835  DAMAEMEKLAGRLPPGFGFEWTGQSREEKLAGSQASVLYAFSLLAVFLCLAALYESWSIP 894

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L    L G+  ++     ++T+IG S  + +++ +  +    L   
Sbjct: 895  FSVMLVVPLGVLGVLLATLLRGMSNDVYFQIGLVTIIGLSAKNAILIVEFAKD---LQAE 951

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA 809
              S  +   ++ +      V TS+A  + V+P+ +  G+      +    +  G++   
Sbjct: 952  GKSVLEAALEAAHLRFRPIVMTSLAFTLGVVPLFIASGASSASQRAIGTGVIGGMITGT 1010


>gi|119510455|ref|ZP_01629588.1| RND multidrug efflux transporter [Nodularia spumigena CCY9414]
 gi|119464877|gb|EAW45781.1| RND multidrug efflux transporter [Nodularia spumigena CCY9414]
          Length = 1057

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 80/530 (15%), Positives = 160/530 (30%), Gaps = 40/530 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   ++  +GL+      LP   + RFP+  P             + + +  +
Sbjct: 8   KRPVFSTVCAFIVLLLGLI-----CLPTLPIARFPNIAP-------------TQINVTAN 49

Query: 62  EDDFVNGFLQM-YSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++   ++ L   +    GI   +     +    IT +F  SR  +  A  V 
Sbjct: 50  FSGASAEDVESGVTNILERQINGIQGIRYITSSSSNDGSTNITATFDSSRNPDIAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L    ++  +  + +    ++      +      I  S        D +  
Sbjct: 110 NRVSVAQPQLPESVQRTGVRVSKQSNNILLAIGLFAENNEYDNIFLSNYADLYIADALKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    DP+RL     TTA ++      N        G     + 
Sbjct: 170 VKGVGDVRIFGERRYAMRLWLDPNRLAGRGLTTADVANALSEQNLQVGAGRIGQEPAPEG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V     ++             +  +    +                        
Sbjct: 230 QRYQIDVRAVSRLT-------------EPSEFEEIVLRTNDDGTLIKLKDVGRAELGAEN 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                   A              +            A L     P     V         
Sbjct: 277 YNSFLRYRAKDAVGLGIYQLPGSNALDVARGVREEMARLAPNFPPGLQYEVAFDTTRFVE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S S    T      LV+IV+F+ +   +  L+   ++ L++I T     L G ++   +
Sbjct: 337 ESMSEVVKTLITAIILVVIVIFVFLQDWRTTLIPALTVPLSLIGTFIFARLFGFSINSLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYST-IFDSNITALIAT 474
           + G+ L  G+ VD  I+V E+I      K  S   +     +  +   I  S +   +  
Sbjct: 397 LFGLTLASGMVVDDAIVVVEQISRFIKDKGMSPRRAASESMAELFGAVIATSLVLMAVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            V FF G      R FA+T+  SI+IS F A+++  ++   ++R  +  +
Sbjct: 457 PVAFFPGTTGALYRQFALTIAFSIVISTFLALTLTPSLCALLLRPGQQTT 506



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 60/140 (42%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    T+ L +  T  F  LFG   N   +  +    G  V+D +VV +++  + 
Sbjct: 363 DWRTTLIPALTVPLSLIGTFIFARLFGFSINSLTLFGLTLASGMVVDDAIVVVEQI--SR 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S R    +S+ E  G  + TS+      +P+A + G+       FA+ +AF I
Sbjct: 421 FIKDKGMSPRRAASESMAELFGAVIATSLVLMAVFVPVAFFPGTTGALYRQFALTIAFSI 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++   ++ +   +   +  
Sbjct: 481 VISTFLALTLTPSLCALLLR 500



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 71/195 (36%), Gaps = 9/195 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW---YF 692
            + +K        +               E+   G+  +I     + +++ +  ++     
Sbjct: 837  DAIKAMEQLAQEVLPPIFGYEWSGTALEEIESGGLAPIIFGLGIVFVFLVLAAQYENYID 896

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  +  + L I   L   ++ G   ++     ++ LIG +  + +++ +      +L  
Sbjct: 897  PLIILLAVPLAIFGALVAQSMRGFANDVYCQIGLVMLIGLASKNAILIVEFAN---QLRE 953

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +S      ++  E L   + T+ +  + + P+ +    G     S    +  G+++A 
Sbjct: 954  QGLSITKAAVEAAQERLRPILMTAFSTLLGIFPLTIATGAGAGSRQSLGTTVFGGMLIAT 1013

Query: 810  SSSIFIAAPILLFIY 824
              S+F+   + + I 
Sbjct: 1014 FLSLFVVPILYIVIK 1028


>gi|262276436|ref|ZP_06054245.1| protein-export membrane protein SecF [Grimontia hollisae CIP
           101886]
 gi|262220244|gb|EEY71560.1| protein-export membrane protein SecF [Grimontia hollisae CIP
           101886]
          Length = 298

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 80/284 (28%), Positives = 148/284 (52%), Gaps = 6/284 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                   + R  G  IS +  + S+  L T GLN+G+DF GG+   V  +  +  + ++
Sbjct: 1   MVTMKNATKLRRIGSLISCVLMVLSVFSLGTKGLNFGLDFTGGMISEVRLDPALTANHIQ 60

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             LE+     ++  +     ++++R       +         +K  +T       + N  
Sbjct: 61  DKLEAALHQPVTVVSAGEPGDWMLRYAAPEMLAEQPE-----LKPILTSFSQTVEMINVS 115

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
           +VGP++ +EL  +G + V+I+ + +L Y+  RF+W  A GA+  L+ D+   LGFF+   
Sbjct: 116 LVGPQVGQELAEQGGLAVLITLLVILGYLSFRFEWRLASGALLALVHDVVLLLGFFSFTE 175

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +EFNLT +AA+L ++GYS+ND +++ DR+R+ ++     +   +L +++I  TL R++ T
Sbjct: 176 LEFNLTVLAALLAVLGYSLNDSIIISDRIRELLRANVI-LPITELNNRAIANTLSRTLIT 234

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           S    ISV  + + GG  +  F++ M  GIV    S++ +A  I
Sbjct: 235 SGTTLISVGSLWLLGGEPLYGFSVTMFIGIVAGTWSTMTVATII 278


>gi|304397748|ref|ZP_07379625.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. aB]
 gi|304354920|gb|EFM19290.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. aB]
          Length = 1050

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 61/552 (11%), Positives = 146/552 (26%), Gaps = 39/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++       P   +  +P  +P               + +  + 
Sbjct: 10  RPIFAAVLSILIFVTGVISI-----PLLPISEYPDVVPP-------------SVQVRAEY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                  +    +  L   +   E +         + +   T++F      +    +V  
Sbjct: 52  PGANPKVIADSVATPLEEAINGVENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  D ++  + T        ++           ++        +  D++   
Sbjct: 112 RVAQAEARLPEDVRRLGVTTQKMSPTLTLVVHMFSPNNTYDSLYLRNYATLKVKDELARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP+++     T + +       N        G   L+   
Sbjct: 172 PGVGQIQIFGAGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLKKQS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                 I       
Sbjct: 232 DFLLSINTQGRLESEQ-------------EFGDIILKTSEDGSLVRLRDVARIEMGSGSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +              L                      
Sbjct: 279 ALRSQLNNKDAVGIGIFQAPGANAIDLSNAVRAKMDELATRFPNDVKWAAPYDPTVFVRD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   ++ ++++ T ++L LLG +L   S+
Sbjct: 339 SIKAVVQTLLEAVILVVLVVILFLQTWRASIIPLLAVPVSIVGTFSVLYLLGFSLNTLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +        S   +           I    +      V +
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIEMGLSPRAAAHQAMREVSGPIIAIALVLCAVFVPM 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + FA T+ +S +IS   ++++  A+   +++        +  +      
Sbjct: 459 AFLSGVTGQFYKQFATTIAISTVISAINSLTLSPALAAMLLKGHDAPKDRLTRIIDALFG 518

Query: 535 PDCIAIQFMRAR 546
                      R
Sbjct: 519 WLFRPFNRFFQR 530



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSIVGTFSVLYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
           +    +S R    +++ E  G  +        +V     +     G     FA  +A   
Sbjct: 425 M---GLSPRAAAHQAMREVSGPII-AIALVLCAVFVPMAFLSGVTGQFYKQFATTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAINSLTLSPALAAMLLK 500



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 55/147 (37%), Gaps = 8/147 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIVEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGEGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++      +F+     + +     + +
Sbjct: 1016 MLGVTLFGLFLTPVFYVALRKLVTRRS 1042


>gi|237717561|ref|ZP_04548042.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229453147|gb|EEO58938.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 1049

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 176/683 (25%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPVEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSIAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSQDSVYNSLYLTNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-S 236
                          +    DP  +R    +  ++       N        G    +D +
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPQQVYQSIQSQNVEVSAGYIGQPIGQDNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  +                 +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRL-------------KSPEQFGNIIIRREQDGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAESFPSGVAYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I T A+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T+++    G   + FA+T+  S ++S F ++++  A+    +   K  +  I       
Sbjct: 458 PTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSNFFIYKGFNKA 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R          L  I  +  +         +  G     V   
Sbjct: 518 YDKTQGVYDKIVKWLLQRPGMALASYGALTVIALLLFMHWPSTFIPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  E +     S+                 G+         ++K       
Sbjct: 578 PAASLERTQAVGEKINGILDSYPEVKNYIGISGFSIMGGGEQSNSATYFVVLKNWSERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+  
Sbjct: 638 KEHTAAAIVNRFNGEAYMTIQAA 660



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/541 (8%), Positives = 136/541 (25%), Gaps = 43/541 (7%)

Query: 329  GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                +         K     +      +       G      G + ++  ++ ++     
Sbjct: 502  KSKPSNFFIYKGFNKAYDKTQGVYDKIVKWLLQRPGMALASYGALTVIALLLFMHWPSTF 561

Query: 389  VADFSIFLNVILTL------------------ALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            + D      + +                     +L           I+G  +  G    +
Sbjct: 562  IPDEDDGYFIAVVQLPPAASLERTQAVGEKINGILDSYPEVKNYIGISGFSIMGGGEQSN 621

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +      ++  + +      +  +                + A V     G GA  G  +
Sbjct: 622  SATYFVVLKNWSERKGKEHTAAAIVNRFNGEAYMTIQAAEVFAMVPPAIPGLGASGGLQL 681

Query: 491  ---------TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
                        +   I+   A    +  +  +    +              +       
Sbjct: 682  QLEDRRNLGPTEMQQAINALLASYHSKPALASVSSQYQANVPQYFLNIDRDKVQFMGIAL 741

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR------ 595
                   G  +   +    +     + +      +    +  +    V  S         
Sbjct: 742  NDVFSTLGYYMGAAYVNDFVEFGRIYQVKIEARDQAQRVIDDVLKLSVPNSAGEMVPFSS 801

Query: 596  -SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             + +E     D   +        L         +    + +E + K+           + 
Sbjct: 802  FTKVEEQLGQDQINRYNMYSTASLTCNVAPGSSTGQAIQEVEALFKEQLGDEFGYEWTSV 861

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +         I+ +I++    L+       W   + A+  L + +   +    + 
Sbjct: 862  AYQETQAGNTTTIVLIMALIVAF---LVLAAQYESWTSPVAAVIGLPVALLGAMIGCLIM 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+  S  + +++ +  R          S R+   ++ +  L   + 
Sbjct: 919  GTPVSIYTQIGIILLVALSAKNGILIVEFARDFRAE---GNSIREAAFEAGHVRLRPILM 975

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS A  + V+P+      G     +    + FG+ +    +         F+   + + +
Sbjct: 976  TSFAFVLGVMPLLFATGAGAQSRIALGAAVVFGMAMNTLLATIYIPNFYEFMQKLQERFS 1035

Query: 832  R 832
            +
Sbjct: 1036 K 1036



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S  N        +  Q           V   +++           
Sbjct: 267 DIARIDLGSASYSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAESFPSGVAY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  T    
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSN 507


>gi|170735176|ref|YP_001774290.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia MC0-3]
 gi|169821214|gb|ACA95795.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia MC0-3]
          Length = 1063

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 156/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+         +  + ++P+  P               + ++ + 
Sbjct: 8   RPIFAWVIAIVLMLAGVASIF-----KMPIAQYPTIAPPT-------------IQIQANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+F+     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFSPGTNPDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +  T      ++    N +       + +  +    +D +   
Sbjct: 110 KLSLATPNLPQVVQQLGMQVTKSSSNWLMWFAFNSEDGRMSKEDLTNYVASHVLDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q L        +     P +L     T   ++      N    G   G    +   
Sbjct: 170 NGVGQTLLLGSQ-FSMRIWLAPIKLTNYSLTPTDVTAAITQQNVQIAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +                
Sbjct: 229 VLQATITESTLL-------------RTPEQFGNILLKVNQDGSQVRLKDVGRAALGSENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L        +             
Sbjct: 276 TFDTKYMGQPTAGLGIQLATGANALATANALRAKIDELSKYFPHGLVVHYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++   ++ + ++ T A++ L G ++   S+
Sbjct: 336 SIEEVVKTLIEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLLGTFAIMGLAGFSINTLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +     S+    +    +      V 
Sbjct: 396 FGLVLAIGLLVDDAIVVVENVERVMAEEGLSPKEATRKAMSQITGALVGVALVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R F++T+  ++++S+  A+ +  A+   I     +K I+         
Sbjct: 456 VAFSGGSVGAIYRQFSLTIVSAMVLSVLVALVLTPALCATI-----LKPIEKGHHEEKKG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F R+R             S   L  +
Sbjct: 511 FFGWFNRTFDRSRDRYTSGVNHVIKRSGRWLVIY 544



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G  +  ++ Q   G S  Q                  +         +   +    
Sbjct: 816  ERYNGVSSIEIQGQAAEGKSTGQAMAAMEALASKLPEGIGYSWTGLSFQEIQSGSQAPIL 875

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      I  + L +   L    L G+E ++     +LT
Sbjct: 876  YAISILVVFLCLA---ALYESWSIPFSVIMVVPLGVVGALLATMLRGLENDVFFQVGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G S  + +++ +  R+ ++        R  I+ +    L   + TS+A  + VLP+A+
Sbjct: 933  TVGLSAKNAILIVEFARE-LQAGGNMGPVRAAIEAA-RLRLRPILMTSLAFMLGVLPLAI 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                G +   +    +  G++ A   +IF+     +
Sbjct: 991  SNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFFV 1026



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 79/220 (35%), Gaps = 6/220 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        L        +++A    L     ++++  
Sbjct: 258 SQVRLKDVGRAALGSENYTFDTKYMGQPTAGLGIQLATGANALATANALRAKIDELSKYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P   + +         R  I + +  +I   + + + +++  +     +     + + + 
Sbjct: 318 PHGLVVHYPYDTTPFVRLSIEEVVKTLIEGIVLVFLVMYLFLQNLRATIIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N  ++  ++  IG  V+D +VV + +     +    +S ++   K++
Sbjct: 378 GTFAIMGLAGFSINTLSMFGLVLAIGLLVDDAIVVVENV--ERVMAEEGLSPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
           ++  G  V  ++      +P+A  GGSV      F++ + 
Sbjct: 436 SQITGALVGVALVLSAVFVPVAFSGGSVGAIYRQFSLTIV 475



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 53/528 (10%), Positives = 144/528 (27%), Gaps = 56/528 (10%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  WLVI  ++   +G++ A      +      P              +G   ++++  
Sbjct: 536  RSGRWLVIYLAVFLAVGVMFA------RLPKSFLPDED-----------QGYMFMIVQ-T 577

Query: 62   EDDFVNGFLQMYSDELRSFL--KKEGIGVFSMRQIQ----------NKITLSFADSRFKE 109
                         D + ++L   ++ +                     + +       ++
Sbjct: 578  PSGSTQETTGKTLDNINTYLTTAEKDVVDSVFTVNGFSFAGRGQNAGLVFVKLKPYEQRQ 637

Query: 110  NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA--IEQSMEII 167
                KV   +    +  +      ++         +  +     ++  +A    +++   
Sbjct: 638  RSDQKVQALIGRTFAHYSTYKDGMVIPFNPPSIPELGTAAGFDFELTDNAGLGHEALMAA 697

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
            R ++  +   +  +  +  + +      + D  R +        ++   +    S     
Sbjct: 698  RGQLLGLAAKDPALALVRPNGLNDTPQYKVDIDREKANALG---VTAAAIDQTFSIAWAS 754

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              V    D+DG          I  +++              +  +     G   F   + 
Sbjct: 755  QYVNNFLDTDG---------RIKKVYVQSDAPFRMTPEDMNIWYVRNSAGGMVPFSAFST 805

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
             +       +     +++  I       + Q +   +   A      L +          
Sbjct: 806  GHWIYGSPKLERYNGVSSIEI-------QGQAAEGKSTGQAMAAMEALASKLPEGIGYSW 858

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
               +        S      AI   +V + L  +             + L V+  L    L
Sbjct: 859  TGLSFQEIQSG-SQAPILYAISILVVFLCLAALYESWSIPFSVIMVVPLGVVGALLATML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDS 466
             G    +    G++  +GL+  + IL+ E  RE           +           I  +
Sbjct: 918  RGLENDVFFQVGLLTTVGLSAKNAILIVEFARELQAGGNMGPVRAAIEAARLRLRPILMT 977

Query: 467  NITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            ++  ++  + L      G  +       +   ++ + F AI ++    
Sbjct: 978  SLAFMLGVLPLAISNGAGSASQHAIGTGVIGGMITATFLAIFMIPMFF 1025


>gi|50122370|ref|YP_051537.1| multidrug resistance protein [Pectobacterium atrosepticum SCRI1043]
 gi|49612896|emb|CAG76346.1| multidrug resistance protein [Pectobacterium atrosepticum SCRI1043]
          Length = 1047

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 80/684 (11%), Positives = 194/684 (28%), Gaps = 40/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL           + ++P+  P   +                  
Sbjct: 8   RPNFAWVVAIFIAMAGLLAI-----SSLPVSQYPAVAPPQIV---------VTATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + +N  +    +E  +  K               +IT++F      +     V   ++ 
Sbjct: 54  AEVINSGVTSLIEEELNGAKGLLYYESQSNSAGSGEITITFQPGTNPDLAQVDVQNRIKK 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L     +  L         +++         S  +  +    R   ++I       
Sbjct: 114 VESRLPASVTQQGLQVEQASTNFLMIFALTAKDKNSDEVNLADYAARNINNEIRRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP++L     +   +       N    G   G +          
Sbjct: 174 RVQMF-SAERALRVWIDPTKLISYGLSINDVDNAIKAQNAQVSGGSLGEQPSPPDQEISA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++S I              +    +   +             +           
Sbjct: 233 NILVQGQLSSIE-------------EFSRIVLKADADGSTVRLSDVGRVEMGRQDYRLSS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L           V          +   
Sbjct: 280 RLNGEPAVGIGVQLSPGANALETAKAVKSRLAELSMNFPENISYSVPHDTSKFVEVAIKK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+ + +   ++ L+    + + ++ TLA++  LG ++ + ++ G+V
Sbjct: 340 VLMTLLEAVVLVFLVMLLFLQNIRYTLIPTIVVPICLLGTLAVMLPLGFSVNMMTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +     ++    I    +  +   + L F 
Sbjct: 400 LAIGILVDDAIVVVENVERIMAEEGLSPKEATIKAMTQISGAIVGITLVLVAVFLPLAFM 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIP 535
            G      R F++++ +SIL S F A+++  A+   +I+                F    
Sbjct: 460 SGSVGVIYRQFSVSLAISILFSGFLALTLTPALCATLIKPIAKGHHAEKKGLFGWFNRKF 519

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG-----IDFKGGIQLGVLANRPVD 590
             +  ++       +  S    +  + +L    + Y                +   +   
Sbjct: 520 SSLTERYSSTTSTLLSRSGRVMLVYVAILGVLAVAYTRLPSAFLPSEDQGYVMTDIQLPP 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +  +  + S +  +  F       + L    +          +  ++ K  +E     +
Sbjct: 580 GATYQRLMTSTKEMENYFLERPAVADVLTLQGFSFSGMGQNAGMGFVMLKDWSERSSEES 639

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
           +QN       + + +    +  ++
Sbjct: 640 VQNEADQSSGVFQSIKDGTLFSIV 663



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + L     + + +  TL      G   N+  +  ++  IG  V+D +VV + +     
Sbjct: 362 IRYTLIPTIVVPICLLGTLAVMLPLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
           +    +S ++   K++ +  G  V  ++      LP+A   G   VI   F++ +A  I+
Sbjct: 420 MAEEGLSPKEATIKAMTQISGAIVGITLVLVAVFLPLAFMSGSVGVIYRQFSVSLAISIL 479

Query: 807 VAASSSIFIAAPI 819
            +   ++ +   +
Sbjct: 480 FSGFLALTLTPAL 492



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++     ++T+IG +  + +++ +  +    L+    SFR    ++        V TS+A
Sbjct: 919  DVYFKVGLITIIGLAAKNAILIIEFAKD---LHAQGKSFRQSAIEAARLRFRPIVMTSLA 975

Query: 779  AFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              + V+P+A+  G   +   +    +  G++ A    +       +++     K+ 
Sbjct: 976  FILGVVPLAIATGAGALSQRAIGTGVMGGMLSATLLGVLFVPVFYVWVMSLMNKSK 1031


>gi|163853904|ref|YP_001641947.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium extorquens PA1]
 gi|218532848|ref|YP_002423664.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
 gi|240141360|ref|YP_002965840.1| multidrug transport protein, acriflavin resistance protein F (RND
           family) [Methylobacterium extorquens AM1]
 gi|254563866|ref|YP_003070961.1| multidrug transport protein, acriflavin resistance protein F
           [Methylobacterium extorquens DM4]
 gi|163665509|gb|ABY32876.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium extorquens PA1]
 gi|218525151|gb|ACK85736.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
 gi|240011337|gb|ACS42563.1| multidrug transport protein, acriflavin resistance protein F (RND
           family) [Methylobacterium extorquens AM1]
 gi|254271144|emb|CAX27151.1| multidrug transport protein, acriflavin resistance protein F (RND
           family) [Methylobacterium extorquens DM4]
          Length = 1069

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 74/643 (11%), Positives = 171/643 (26%), Gaps = 40/643 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +   +   +G +        +  + ++P  +P               + +    
Sbjct: 10  RPIFASVTSIIFLIVGFVA-----YEKLPVSQYPEIVPPT-------------VTVRASF 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +       L   +     +   +     +    +T++F      +     V  
Sbjct: 52  PGANAETVAATIATPLEQEINGVDNMLYMTSLSTNDGAMLLTVTFKVGTNLDIANVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L  D +   +         +++      +        +  I     D++   
Sbjct: 112 RLSVAQPRLPPDVRNLGVTVRKASPDLMLVVHLLSPKRTYDQNYLANYIYLNIRDELLRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +                   DP ++     TT  ++      N                 
Sbjct: 172 DGVGDISIFGGNEYAERVWIDPQKMAAYGLTTTDVTSALQEQNVQVAAGQLNGPPAAPGA 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q +V+ +                 ++ +   D+       R         +       
Sbjct: 232 AFQLVVQSQGR--------------FQSPEQFADVIVKANDGRLVRVRDIARVEMGQKDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +     E+       L+    P     +          
Sbjct: 278 TTNSFLNDTPAVGIGAFQRPGTNALEAAESVKATMEQLKKNFPPDVEYRIAYNPTEFIEE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+ + +   +  L+   +I ++++ T A++S LG +L   ++
Sbjct: 338 SIHEVYKTLFEAVLLVVIVVLVFLQSWRTALIPVIAIPVSLVGTFAVMSALGFSLNNLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +           +    +      +  
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERNMAEGLSAGEAAHKTMDEVGGAVIAIALVLAAVFIPT 457

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + FA+T+  S +IS F ++++  A+   +++           L+RF   
Sbjct: 458 AFIPGISGQFYKQFALTIAASTIISAFNSLTLSPALCKLLLKPHHEHKPPKFFLTRFLNW 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +  +   A   G   SI F   +   +    + Y     G + L             
Sbjct: 518 LAHLFNRGFDALSNGYAHSIRFLTGTAIGVIAMLILYAGVIAGTLHLARTTPTGFIPDQD 577

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           +  L  +                    +   G       V+  
Sbjct: 578 QGYLIGVVQLPAGSSLDRTTDAVNRAAKIARGVDGITNTVIIA 620



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 12/152 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  +   +   L    L G + N+     ++ LIG +  + +++ +      
Sbjct: 903  SWALPLAILLVVPTGVLAALFGVQLRGQDNNILTQIGLIVLIGLAAKNAILIVEFAHDIE 962

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                      D   ++    L   + T+ A  + VLP+ +    G  +  +    + FG+
Sbjct: 963  NSENKG--PVDAAVQACRLRLRPILMTAFAFILGVLPLVIATGPGAEMRQALGTAVFFGM 1020

Query: 806  VVAASSSIFIAAPI-------LLFIYDWRAKN 830
            + A    +F+           +++I   R K+
Sbjct: 1021 IGATFFGLFLTPVFYVVIRKAVIWIGRKRGKD 1052



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 60/145 (41%), Gaps = 16/145 (11%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  AL  +  + + +  T    +  G   N   +  ++  IG  V+D +VV + + +NM
Sbjct: 363 SWRTALIPVIAIPVSLVGTFAVMSALGFSLNNLTLFGLVLAIGIVVDDAIVVVENVERNM 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSM--------AAFISVLPMAVWGGSVIGSFAIP 800
                 +S  +   K+++E  G  +  ++         AFI  +      G     FA+ 
Sbjct: 423 AE---GLSAGEAAHKTMDEVGGAVIAIALVLAAVFIPTAFIPGIS-----GQFYKQFALT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           +A   +++A +S+ ++  +   +  
Sbjct: 475 IAASTIISAFNSLTLSPALCKLLLK 499


>gi|62261535|gb|AAX77996.1| unknown protein [synthetic construct]
          Length = 680

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 280/542 (51%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D    ++  L      + S
Sbjct: 133 YIIAMNMLSNSP--NWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILS 190

Query: 80  FLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
             K   I + S  +                  ++++ A+S   + +   ++         
Sbjct: 191 AAKDNSINISSSTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLST-------D 243

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 244 FIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAG 303

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G      
Sbjct: 304 DNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNGRGYQSY 363

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 364 YSLKGTAIAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 423

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 424 TTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 483

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ +N+IL 
Sbjct: 484 VPVHIVQEQQIGPSLGKDNIGKGMLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILI 543

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 544 VAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 603

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 604 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKK 663

Query: 521 KS 522
             
Sbjct: 664 LE 665



 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 453 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVI 512

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 513 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 571

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 572 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 628

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 629 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 667



 Score = 43.5 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  +I  + +  ALPN   +S                           L++ 
Sbjct: 37  QFPLWKNLLIVIILALAIFYALPNVFGKSPA-------------------------LQIS 71

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 72  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 129

Query: 120 Q 120
            
Sbjct: 130 S 130


>gi|34557613|ref|NP_907428.1| preprotein translocase subunit SecD [Wolinella succinogenes DSM
           1740]
 gi|34483330|emb|CAE10328.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Wolinella succinogenes]
          Length = 525

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 157/540 (29%), Positives = 285/540 (52%), Gaps = 36/540 (6%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
             + ++ +   +GL ++LP+F                +I+LGLDL+GG +++L V  D+ 
Sbjct: 7   LKLGVFLLAFILGLALSLPSFFSSISGP---------KITLGLDLQGGLNMLLGVKTDEA 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +    +  +  L  + +++ I + S++   + +T    D   K  + + +          
Sbjct: 58  IKTKYKSLASSLGFYTQEQKILIDSLKASSDSVTFELLDMDEKRKVDEFL---------- 107

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  +  +   +    + L ++ I  + + A+EQ++  IR R+DQ G++E ++ + G
Sbjct: 108 ---GKNGHFRIDFDQGRYRVTLMESEITSIKNFAVEQAIGTIRNRLDQFGLAEPSVTKQG 164

Query: 186 SHRILIQLPGE---QDPSRLRQLLGTTAKMSFHKVLP----------NNSKKGFMFGVRF 232
              IL++LPG    Q+  R ++L+  +A +    V                +     +  
Sbjct: 165 QDYILVELPGIKSAQEEQRAKELIAKSAHLQMMAVDEARNDRVASMTPEEAERLGSVILP 224

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
              ++  + L++    + G  L  A   +D    +PV++ S D  GA+ F + +  NIG 
Sbjct: 225 YAQNEQAKILLKAIPILDGSMLTDARVAYDQNN-QPVINFSLDSQGAKIFGDFSGKNIGN 283

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            +A+VLD +V +APVI + I  G  QISG FT++ A  +A  LR+G+LP  + ++E+R+V
Sbjct: 284 RMAIVLDNKVYSAPVIRERIGGGSGQISGGFTVDQASDIAIALRSGALPAPIEMLEKRSV 343

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LGSDSI     A+ +G  L+VLFM+  YG  G++A+ ++  N++L +A+++L GATL
Sbjct: 344 GPSLGSDSIMASMIALASGFALVVLFMMFYYGMAGVIANIALVANLLLIIAVMALFGATL 403

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP +AGIVL +G+AVD+N+++NERIRE  R+ + V  ++  G++ A   IFDSN+T LI
Sbjct: 404 TLPGMAGIVLTVGMAVDANVIINERIRECLREGKGVVKAISEGYANASRAIFDSNLTTLI 463

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +V+L+ +G G ++GFA+T+ + I+ S+ TAI     +  ++                  
Sbjct: 464 TSVLLYAYGTGPIKGFAVTISIGIVASVITAIIGTHGVYEWLGPKIAKSQKTAFWFGFKQ 523



 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 77/177 (43%), Gaps = 4/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I   ++ +      +++++   +     + A   L+ ++   +   ALFG
Sbjct: 342 SVGPSLGSDSIMASMIALASGFALVVLFMMFYYGM-AGVIANIALVANLLLIIAVMALFG 400

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++ +R+R+ ++           I +           +
Sbjct: 401 ATLTLPGMAGIVLTVGMAVDANVIINERIRECLRE---GKGVVKAISEGYANASRAIFDS 457

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++   I+ + +  +G   I  FA+ ++ GIV +  ++I     +  ++    AK+ +
Sbjct: 458 NLTTLITSVLLYAYGTGPIKGFAVTISIGIVASVITAIIGTHGVYEWLGPKIAKSQK 514


>gi|85708080|ref|ZP_01039146.1| preprotein translocase subunit [Erythrobacter sp. NAP1]
 gi|85689614|gb|EAQ29617.1| preprotein translocase subunit [Erythrobacter sp. NAP1]
          Length = 326

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 93/303 (30%), Positives = 162/303 (53%), Gaps = 7/303 (2%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+P    I+F++ R     +SI+  + S   +   GLNYG+DF GG ++      
Sbjct: 1   MKLLKLVPQDTNIKFLKLRVPFFILSIVLIVGSWAAVLALGLNYGVDFAGGQEIRATFTE 60

Query: 588 PVD--LSVVRSNLESL-QIGDISFQNFDGEKNFLVRL---QYQPGDSVAQTRVLEMVKKK 641
             +  +  +R  +  L  I D   Q F       +R+       G+      +   +  +
Sbjct: 61  TAEAPVVELREVIGDLENIEDPIVQRFGEPNEVSIRVKLPPEAEGNPEFANEMTNAIVTE 120

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           I +  P   I   + V  K+S E      + +I + + + +YIWIRF+W F +GA+  L 
Sbjct: 121 IQQSYPDIRIDGVDSVSGKVSGEFRNDAALALIAAMVMVALYIWIRFEWQFGVGALFALF 180

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            D++ TLG FAL  +EF+L  +AA+L +IGYS+ND +VVYDR+R+N+K Y   +   +L+
Sbjct: 181 HDVSVTLGLFALTQMEFSLQIIAAILAIIGYSLNDTIVVYDRIRENLKKYRK-MPLPELL 239

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           D S+NETL R+V TS+   +++LP+  +G + +      +  G+ +   SS+++AAP+L+
Sbjct: 240 DLSVNETLARTVMTSLTLLVALLPLLFFGPASLFGLVAAITAGLFIGTYSSVYLAAPLLV 299

Query: 822 FIY 824
           ++ 
Sbjct: 300 WMG 302


>gi|262040395|ref|ZP_06013640.1| multidrug efflux transport permease protein EefB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259042258|gb|EEW43284.1| multidrug efflux transport permease protein EefB [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 1035

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 75/687 (10%), Positives = 187/687 (27%), Gaps = 47/687 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P               + +   
Sbjct: 8   RRPVFAWVIAILIMLAGVLAI-----RTLPVGQYPDVAPPA-------------VKISAT 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   L+      +   L            S       IT++F      +    +V 
Sbjct: 50  YTGASAETLENSVTQVIEQQLTGLDHLLYFSSTSSSDGSVSITVTFEQGTDPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   S+L  + +++ +     +   +++         + + + S  ++    D +  
Sbjct: 110 NKVQQAQSRLPSEVQQSGVTVEKSQSSFLLILAVYDKTNRATSSDISDWLVSNMQDPLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    DP++L       + +       N        G     ++
Sbjct: 170 VEGVGSLQVFGA-EYAMRVWMDPTKLASYSLMPSDVQSAIEAQNVQVSAGKIGALPSSNA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  +  +                 +    I   +             +      
Sbjct: 229 QQLTATVRAQSRL-------------QTPDQFKAIIVKSQADGSVVRLSDVARVEMGSED 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +   T        A  +            + +     
Sbjct: 276 YTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQGYDIAYPKDSTEFIK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V+++ +   +  L+   ++ + ++ T  +L+L G ++   +
Sbjct: 336 ISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGTFGVLALFGYSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +    R        + +         +    +      +
Sbjct: 396 LFAMVLAIGLLVDDAIVVVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F++T+  ++++S+  A+++  A+   ++ + K  +          
Sbjct: 456 PMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALLSHSKPHTKGFFGAFNRL 515

Query: 533 LIPDCIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                   Q        R   +  +      ++ L         +  +   ++ V    P
Sbjct: 516 WGRTEAGYQRRVLGGLRRGAVMMGAYALICGAMALAMWKLPGSFLPVEDQGEIMVQYTLP 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR--VLEMVKKKITEIV 646
              + VR+     Q+ D          + +  +         Q        +K       
Sbjct: 576 AGATAVRTAEVRRQVTDWFLTKEKANTDVIFTVDGFSFSGSGQNAGMAFVSLKNWSQRKG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
             +T Q   +   K    +    +  +
Sbjct: 636 DDNTAQAIALRATKELGTIRDATLFAM 662



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +    +          +  +     +++    +++    +    +P 
Sbjct: 261 VRLSDVARVEMGSEDYTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQ 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + I ++  +++  + +   L     + + +  T
Sbjct: 321 GYDIAYPKDSTEFIKISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 381 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LPMA +GGS       F++ +   ++++   ++ +   +   + 
Sbjct: 439 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALL 498

Query: 825 DWRAKNAR 832
                + +
Sbjct: 499 SHSKPHTK 506



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 76/252 (30%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +               Q G  S   ++G   F ++ +   G S              
Sbjct: 786  VRGSDNSMTPFSAFATTHWQYGPESLVRYNGSAAFEIQGENAAGFSSGAAMDKMEKLADS 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    + +++  + +     +   W      I  + L
Sbjct: 846  LPAGSTWAWSGISLQEKLASGQAMSLYAISILVVFLCLA---ALYESWLVPFSVIMVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        L G+  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 903  GLLGAALAATLRGLSNDVYFQVALLTTIGLSSKNAILIVE-FAE--SAVDEGYSLSRAAI 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   V TS+A    VLP+A+    G +   +    +  G + A   ++F     
Sbjct: 960  RAAQTRLRPIVMTSLAFIAGVLPLAIATGAGANSRVAIGTGIIGGTLTATLLAVFFVPLF 1019

Query: 820  LLFIYDWRAKNA 831
             + +     +  
Sbjct: 1020 FVLVKRLFTRQR 1031


>gi|153806315|ref|ZP_01958983.1| hypothetical protein BACCAC_00574 [Bacteroides caccae ATCC 43185]
 gi|149130992|gb|EDM22198.1| hypothetical protein BACCAC_00574 [Bacteroides caccae ATCC 43185]
          Length = 1048

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 80/683 (11%), Positives = 182/683 (26%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSVAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSQDSVYNSLYLTNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
                          +    DP  +R    +  ++       N        G     ++ 
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPQQVYQSIQSQNMEVSAGYIGQPIGEENK 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  +S                +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRLS-------------SPEQFGNIIIRREQNGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L A         V         
Sbjct: 278 YSVVSRLKGQPTAAIAIYQQPGSNSLDVSKGVKAKMQELAANFPAGVSYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCLTIPVSLIGTLAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSTREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            T+++    G   + FA+T+  S ++S F ++++  A+    +   K  +  I       
Sbjct: 458 PTMLISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSNFFIYKGFNKA 517

Query: 533 LIPDCIAIQFMRARFWG------VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 A   +            V   IL +I  +  +         +  G     V   
Sbjct: 518 YDKTQGAYDKIVKWLLARPGMALVSYGILTAIAVLLFMHWPSTFIPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  + +     S+   +             G+         ++K       
Sbjct: 578 PAASLERTQAVGDKINRILDSYPEVENYIGISGFSVMGGGEQSNSATYFVVLKNWSERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+ G
Sbjct: 638 KEHTAAAVVNRFNGEAYMTIQAG 660



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/541 (9%), Positives = 146/541 (26%), Gaps = 43/541 (7%)

Query: 329  GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                +         K     +      +       G   +  G++  +  ++ ++     
Sbjct: 502  KSKPSNFFIYKGFNKAYDKTQGAYDKIVKWLLARPGMALVSYGILTAIAVLLFMHWPSTF 561

Query: 389  VADFSIFLNVILTLA------------------LLSLLGATLTLPSIAGIVLGIGLAVDS 430
            + D      + +                     +L           I+G  +  G    +
Sbjct: 562  IPDEDDGYFIAVVQLPPAASLERTQAVGDKINRILDSYPEVENYIGISGFSVMGGGEQSN 621

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +      ++  + +      +  +                + A V     G GA  G  +
Sbjct: 622  SATYFVVLKNWSERKGKEHTAAAVVNRFNGEAYMTIQAGTVFAMVPPAIPGLGASGGLQL 681

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +     +        + AM+        + S+     +        I    ++     +
Sbjct: 682  QLEDRRNLGPTEMQQAINAMLASYHSKPALASVSSQYQANVPQYFLNIDRDKVQFMGIAL 741

Query: 551  GI-----SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
                   S       +      G  Y +  +   Q   + +  + LSV  +  E +    
Sbjct: 742  NDVFSTLSYYMGAAYVNDFVEFGRIYQVKIEARDQAQRVIDDVLKLSVPNAAGEMVPFSS 801

Query: 606  ISFQNFDGEKNFLVRLQ-----------YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +       ++ + R                  +    + +E + K+           + 
Sbjct: 802  FTKVEEQLGQDQINRYNMYSTASLTCNVAPGSSTGQAIQEVEALFKEQLGDEFGYEWTSV 861

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +         ++ +I++    L+       W   + A+  L + +   +    + 
Sbjct: 862  AYQETQAGNTTTIVLVMALIVAF---LVLAAQYESWTSPVAAVIGLPVALLGAMIGCLVM 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+  S  + +++ +  R     +    S R+   ++ +  L   + 
Sbjct: 919  GTPVSIYTQIGIILLVALSAKNGILIVEFARDF---HAEGNSIRESAFEAGHVRLRPILM 975

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS A  + V+P+      G     +    + FG+ +    +          +   + K +
Sbjct: 976  TSFAFVLGVMPLLFASGAGAQSRIALGAAVVFGMAMNTLLATVYIPNFYELMQKLQEKFS 1035

Query: 832  R 832
            +
Sbjct: 1036 K 1036



 Score = 41.6 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 78/245 (31%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S           +  Q           V   +++         + 
Sbjct: 267 DIARIDLGSASYSVVSRLKGQPTAAIAIYQQPGSNSLDVSKGVKAKMQELAANFPAGVSY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  TL   
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCLTIPVSLIGTLAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSTREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFIPTMLISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSN 507


>gi|323493403|ref|ZP_08098525.1| preprotein translocase subunit SecF [Vibrio brasiliensis LMG 20546]
 gi|323312226|gb|EGA65368.1| preprotein translocase subunit SecF [Vibrio brasiliensis LMG 20546]
          Length = 300

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 78/288 (27%), Positives = 147/288 (51%), Gaps = 6/288 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               +  R R+    +S    + S+  L  +GLN G+DF GG+   V  +  V  S +  
Sbjct: 4   FFKQRIRRIRYITSFVSFALMVISLVALAMNGLNMGLDFTGGMVTEVKVDNNVTHSQLVE 63

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L+       +  + D +  +++R         A       + K +  I     + +  +
Sbjct: 64  TLQPELGEFTNVTHSDQDGRWVIRYPIPQQGEQAVD-----LSKTLAPISHQVDVISNSM 118

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG ++ ++L+ +G + ++IS + +L Y+  RF+W  A G++  LI D+   LGFFA   +
Sbjct: 119 VGSQVGQDLVDQGGLALMISMMCILGYLCFRFEWRLASGSLLALIHDVVLVLGFFAATQM 178

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT  AA+L ++GYS+ND +++ DR+R+ + +   ++S  ++ D+++  T  R++ TS
Sbjct: 179 EFNLTVFAAILAILGYSLNDSIIIADRIRE-LLIAKQNLSTEEINDQAVIATFSRTMVTS 237

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               ++V  + + GGS +  FA+ M  GI+    SSI I   +  ++ 
Sbjct: 238 GTTLLTVSALWIMGGSALQGFAVAMFIGILSGTWSSISIGTVLPEWLK 285


>gi|157962888|ref|YP_001502922.1| protein-export membrane protein SecF [Shewanella pealeana ATCC
           700345]
 gi|157847888|gb|ABV88387.1| protein-export membrane protein SecF [Shewanella pealeana ATCC
           700345]
          Length = 302

 Score =  181 bits (458), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 75/274 (27%), Positives = 141/274 (51%), Gaps = 7/274 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           +AR+     S+L  + SI ++ T+G N G+DF GG+   V  +  +  + +   L     
Sbjct: 14  KARYLSSVFSLLIMLASIGIILTNGFNLGLDFTGGVVTEVKLDPNIKAAQISELLGKDSQ 73

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            ++S  +      +++R       S A       ++  +  +     + N+ IVGP+I +
Sbjct: 74  QEVSVISAGEPGRWVLRYAKVDDVSGAD------IRTVLAPLTNQVEVLNSSIVGPQIGQ 127

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + ++ + + +L Y+  RF+W  A GA+  L  D+   L FF+L  +EFNLT +
Sbjct: 128 ELAEQGGLALLAAMLCILGYLSFRFEWRLASGALLALFHDVIFVLAFFSLTQMEFNLTIL 187

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AAVL ++GYS+ND +V+ DR+R+ +       +  ++   ++  T  R++ TS     +V
Sbjct: 188 AAVLAILGYSLNDSIVIADRVREVLIAKPK-AAIDEICSSAVQATFSRTMVTSGTTLFTV 246

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             + + GG+ +  F+I M  GI++   SS+ +  
Sbjct: 247 AALWIMGGAPLQGFSIAMFLGILIGTISSVSVGT 280


>gi|330868821|gb|EGH03530.1| AcrB/AcrD/AcrF family transporter [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 1047

 Score =  181 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 180/692 (26%), Gaps = 55/692 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIFTLNYKDGSATKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 RRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSAVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVKQRLTELSVNFPEGVEFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHSEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGRFTDRYERVSSGMIKRAGRYMLLYVGIVGLLGFFYLRLPDSFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V        S       + Q+ +    + +      + L +          +     K 
Sbjct: 575 DVQLPPGATRS---RTDLTAQLLENYMLSREATGAVTMLLGFSFSGMGENAGLAFPTLKD 631

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +E     +         +    L    ++ V
Sbjct: 632 WSERGKGQSAAEEAAAFNQHFSGLADGTVMAV 663



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVKQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A    + I  PI         +  
Sbjct: 1009 ATLLGV-ILVPIFFVWVLSVLRRK 1031


>gi|291618518|ref|YP_003521260.1| AcrB [Pantoea ananatis LMG 20103]
 gi|291153548|gb|ADD78132.1| AcrB [Pantoea ananatis LMG 20103]
          Length = 1033

 Score =  181 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 70/552 (12%), Positives = 147/552 (26%), Gaps = 41/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL       P+  +  +PS  P               + +    
Sbjct: 8   RPVFAWVIAVFIILFGLLSI-----PKLPVALYPSVAPPT-------------ISITASY 49

Query: 63  DDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L            S       IT++FA     E     V  
Sbjct: 50  PGSTPETMNNSVVALIERELSSAKHVLYYESSSDTSGMASITVTFAPGTDPELAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ +  +L    ++N L         +++             + S    R   +++   
Sbjct: 110 RIKVIEPRLPQAVRQNGLSVEASGANFLMIVGLTSKDGKLTEADLSDYFSRNITEELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP +L     T + +S      N        G        
Sbjct: 170 EGVGRVQLFGA-EKAMRVWVDPVKLSLYRLTVSDISRAINTENTQIAPGRTGDAPAVAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +  K ++                 +             R        +       
Sbjct: 229 QVSYPLLVKGQLG-------------SPQEFASITLRANPDGSRVVLSDVARVELGSQTY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                    V   A        +   T E   +    LR          +          
Sbjct: 276 SFATRENGRVSTAAAIQLSPGANAVKTAERIKLRLNELRQAMPEGMAYSIPFDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++  +      + ++ T  ++ L G ++ + ++
Sbjct: 336 SIEKVIHTFIEAMILVFLVMYLFLQNVRYTFIPAIVAPIALLGTFTVMLLAGFSVNVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERIMTEEGLGPKAATQKAMKEITGAVIGITLVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +    G      R F ++M +SILIS F A+S+  A+   +++     +        +F 
Sbjct: 456 MAMASGSVGAIYRQFTLSMAVSILISAFLALSLTPALCATLLKPVDRHAHQKKGFFGWFN 515

Query: 534 IPDCIAIQFMRA 545
                       
Sbjct: 516 HKFAAMTYLYGR 527



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 89/247 (36%), Gaps = 14/247 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       Q    + +                 ++V     +++   ++ + +
Sbjct: 258 SRVVLSDVARVELGSQTYSFATRENGRVSTAAAIQLSPGANAVKTAERIKLRLNELRQAM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I K I   I + I + + +++     R+ +  A+ A   L 
Sbjct: 318 PEGMAYSIPFDTTPFVKISIEKVIHTFIEAMILVFLVMYLFLQNVRYTFIPAIVAPIAL- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T     L G   N+  +  ++  IG  V+D +VV + +     +    +  +   
Sbjct: 377 ---LGTFTVMLLAGFSVNVLTMFGMVLAIGIIVDDAIVVVENV--ERIMTEEGLGPKAAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            K++ E  G  +  ++      +PMA+  GSV      F + MA  I+++A  ++ +   
Sbjct: 432 QKAMKEITGAVIGITLVLSAVFIPMAMASGSVGAIYRQFTLSMAVSILISAFLALSLTPA 491

Query: 819 ILLFIYD 825
           +   +  
Sbjct: 492 LCATLLK 498



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 71/181 (39%), Gaps = 7/181 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
               G    ++   +  + +++S + + + +   ++ W   +  +  + L +   +   +L
Sbjct: 852  WTGGSLQEQQSASEAPMLMVLSMLVVFLVLAALYESWSVPVSVMLVVPLGLLGAVIAVSL 911

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
              ++ ++     ++T+IG S  + +++ +  +   +++       +   ++    L   +
Sbjct: 912  MDMQNDVFFKVGMITIIGLSAKNAILIVEFAK---QMHEGGKGLVEATLEASRMRLRPIL 968

Query: 774  YTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS+A  + V+P+ +  G+   +       +  G++     +IF        +     K 
Sbjct: 969  MTSLAFTLGVVPLMLASGASARTQQAIGSGVFGGMISGTLLAIFFVPLFYFSVMKAVEKL 1028

Query: 831  A 831
             
Sbjct: 1029 K 1029


>gi|297568607|ref|YP_003689951.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924522|gb|ADH85332.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 1040

 Score =  181 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 87/687 (12%), Positives = 184/687 (26%), Gaps = 46/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G + A         ++++P  +P   +                  
Sbjct: 8   RPIFASVISIIIILAGGVAA-----YTLPVEQYPDVVPPQVVVQ-------------AAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  L    +  L   +   E +              IT+SFA     +  A  V  
Sbjct: 50  PGADAETLAASVAAPLEQEINGVENMIYQESTSTDAGTLMITVSFAMGTDPDQAAINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q    +L    +   +   +     +++            +  S   +   ID++   
Sbjct: 110 RVQAALPRLPQRVRDLGVRVESRSTNLLMVGVLTSPDGSHDTLGLSNYALLNVIDELARL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P RL Q   T + ++      N        G        
Sbjct: 170 PGVGDASLFVSQDYSMRIWLQPDRLAQYQLTPSDIAAALREQNTQFAAGQIGAEPAPQDQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  + ++S                +    I                 +       
Sbjct: 230 AFTYTVATRGQLSA-------------PEEFADIIVRSGPDGAILRLGDVARVELGSQRY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +   T E      A +           V          
Sbjct: 277 DFSATYNGRPTVPIGVYLQPGANALATAERVHNTLAEISQRFPEGIAYTVPFDTTEFVEI 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  + A LV++V F+ +   +  ++   +I +++I T A + L G ++ L ++
Sbjct: 337 SIQEVVKTIFVAAVLVILVTFLFLQRFRATMIPVAAIPVSLIGTFAGMQLFGFSINLLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD+ I+V E +      +      +      +    +  S +  +   V 
Sbjct: 397 FGLVLSIGIVVDNAIIVMENVERLMKEQGLKAKEAAFATMDQVAGAVVASTLVLVAVFVP 456

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK------KMKSIDINP 527
           + F GG +    R FAIT+ +S+++S   A+++  AM   ++  +        K  +   
Sbjct: 457 VSFLGGLSGELYRQFAITIAVSVVVSGVVALTLTPAMCAKLLDGQKSTVLAPFKLFNRLF 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                    C      R     +  + L  +  + L          + +G   +      
Sbjct: 517 AHATSFFVACAGFLIRRWALGLLLFAGLLGVTVVMLERMPTGLVPQEDQGVALVVGNLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              LS      ++L    ++         F            +       +        P
Sbjct: 577 SASLSRTSEVRDTLTQMLVAQPEIAEFTGFAGFDILASSLRTSALIGFANLTDWSERRAP 636

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +   +    I   I
Sbjct: 637 EQHAGAVAQRVMGMGFGIQEANIFAFI 663



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 73/214 (34%), Gaps = 5/214 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L S +    +  N        V LQ          RV   + +           
Sbjct: 265 DVARVELGSQRYDFSATYNGRPTVPIGVYLQPGANALATAERVHNTLAEISQRFPEGIAY 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    +   +        + + + +L+      ++   +  +  + + +  T    
Sbjct: 325 TVPFDTTEFVEISIQEVVKTIFVAAVLVILVTFLFLQRFRATMIPVAAIPVSLIGTFAGM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   NL  +  ++  IG  V++ ++V + +     +    +  ++    ++++  G 
Sbjct: 385 QLFGFSINLLTLFGLVLSIGIVVDNAIIVMENV--ERLMKEQGLKAKEAAFATMDQVAGA 442

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
            V +++      +P++  G   G +   FAI +A
Sbjct: 443 VVASTLVLVAVFVPVSFLGGLSGELYRQFAITIA 476



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/451 (11%), Positives = 125/451 (27%), Gaps = 22/451 (4%)

Query: 401  TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS--LDMGFSR 458
               +L            AG  +       S ++    + + + +      +  +      
Sbjct: 590  LTQMLVAQPEIAEFTGFAGFDILASSLRTSALIGFANLTDWSERRAPEQHAGAVAQRVMG 649

Query: 459  AYSTIFDSNITALIATVVLF------FFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
                I ++NI A I   ++         G   VRG      +  +     A +  R  + 
Sbjct: 650  MGFGIQEANIFAFIPPPIMGMSLTGGVEGYLQVRGETTATAMEAMAQQVVAKANQRPELG 709

Query: 513  FIIRY---KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
             +         +        +   +   I   F   +       +        L   +  
Sbjct: 710  QVRTTLDAGIPRYRAEVDREKARDLGVPINTIFEAMQSTFGANYVNDFSYLGRLWQVNMQ 769

Query: 570  NYGIDFKGGIQLGVLA-----NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
              G        L  +         + LS +           I+  N       +      
Sbjct: 770  AEGEFRSQPEDLRHVFVRSSHGEMIPLSSLLQLELVTGADIINRFNLYPAAKLMADPAPG 829

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                 A+  +  +V +   E     T+        ++       G+   +   +  LI  
Sbjct: 830  YTSGQAKEALEAVVAEMAREAAGSETLMGWIGEAYQLDVAAGAGGLAFGLGLLMVFLILA 889

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                +W   L   + + + +        + G+  ++     +L LIG +  + +++ +  
Sbjct: 890  AQYERWTLPLAVASAVPVAVFGAALAALVRGLPNDIYFQVGLLVLIGLAAKNAILIVEFA 949

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
             +N +     +S  +    +  +     V T+M   I  LP+      G +        +
Sbjct: 950  AQNRRQ---GMSPPEAAMAAARQRFRAIVMTAMTFIIGTLPLVFASGAGAASRQEIGTVV 1006

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G++ A++ ++         +     K +R
Sbjct: 1007 LGGMLAASTLALLFVPLFYSLLESLAGKRSR 1037


>gi|15966508|ref|NP_386861.1| multidrug-efflux system transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|307300455|ref|ZP_07580235.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti BL225C]
 gi|307318320|ref|ZP_07597755.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti AK83]
 gi|15075779|emb|CAC47334.1| Probable multidrug-efflux system transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306896002|gb|EFN26753.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti AK83]
 gi|306904621|gb|EFN35205.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti BL225C]
          Length = 1058

 Score =  181 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 71/570 (12%), Positives = 150/570 (26%), Gaps = 41/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  +G +        Q  + ++P   P               +V+    
Sbjct: 10  RPIFASVLSIVLLIVGSIA-----YFQLPVAQYPEIAPPT-------------IVVRASY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S          +T++F      +     V  
Sbjct: 52  PGADAETVANTVATPLEQEINGVENMLYMSSYATADGSMALTITFKLGTDLDQAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + TT      +++            +  S     +  D +   
Sbjct: 112 RVSIAEPRLPEEVRRIGVTTTKSSPDLMMVVHLLSPNDRYDQLYVSNYARTRIRDILVRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L        L    DP +L     T   +       N    G   G   +    
Sbjct: 172 DGVGDVLLFGEREYALRIWLDPQKLSAYGMTAGDVVSALREQNVQVSGGSIGGPPMSSDS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY V      S                     I       R         I       
Sbjct: 232 AFQYTVTTDGRFSDARQFRY-------------VIVKATEEGRLVQLQDVARIELGAREY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +     +        L           +          
Sbjct: 279 VTNSYLNGSPAVALGIFSRPGSNALAAADAIQATMTELSRDFPEGLEYRIIYNPTEFISE 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A  A LV +V+ + +   +  ++   +I ++++ T ALL   G +L + ++
Sbjct: 339 SIDEVYKTIAEAALLVALVVIVFLQSWRTAIIPIVAIPVSLVGTFALLYAFGFSLNMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  +   +  +      + +   ++      V  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNLARGMTPREAAHVTMDEVGAAVIAISLVLTAVFVPT 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFF 532
            F     G     FA+T+ ++ +IS   ++++  A+   +                    
Sbjct: 459 AFIPGIAGQFYLQFAVTIAVATVISAVNSLTLSPALAAILLRPHENHDHESRNPLTRLGR 518

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSIC 562
              +     F R                I 
Sbjct: 519 GFANGFNRGFDRMADGYAWTVRHLVRTRIA 548



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 53/429 (12%), Positives = 132/429 (30%), Gaps = 20/429 (4%)

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             AG          ++ ++                S +    + +  +       +IA   
Sbjct: 621  FAGFNGATFTNASNSGVIFTPFDSFEE-RLEQKQSAEQIIGQIFGAMQGIQEAFIIAVPP 679

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G G   GF + +       M  A+ +   MM    + + +  +     +       
Sbjct: 680  PSVRGIGNSGGFKMQIMDRQSADMRRALGLAYQMMGAANQTEGLTGVFTTFTASSPQFFL 739

Query: 537  CIAIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I     RA           +SI      +      G  Y +  +   Q  +     + L
Sbjct: 740  AIDRDKARALNVPIPNIFETLSINLGTSYVNDFNAFGRVYQVRAQADQQFRLEREDILAL 799

Query: 592  SVVRSNLESLQIGDISFQNFDGE----KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V  ++   + +G +            + + + +      + A          K+  +  
Sbjct: 800  KVRSASGALVPLGTLVEIRDTSGPALVQRYNMYVSVPVQGNPAPGVSTGSALDKMEALAG 859

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAITTLILD 703
                Q T     +++ +  + G   V I +   + +++ +      W   L  I  + L 
Sbjct: 860  QILPQGTTFEWTELALQERQTGNTAVFIFALSVVFVFLALSAQYESWVLPLAIILIVPLA 919

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +   L   ++ G + N+     ++ LIG +  + +++ +  R   +      +  +    
Sbjct: 920  VLAALLGVSIRGFDNNVLTQIGLIVLIGLAAKNAILIVEFAR---QGEEEGKTPIEAAID 976

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + T+ A  + V+P+ +    G  +  S    +  G++      +F+     
Sbjct: 977  ASRLRLRPILMTAFAFILGVVPLVIATGPGAEMRQSLGTAVFAGMLGVTFLGLFLTPVFY 1036

Query: 821  LFIYDWRAK 829
            + +   R K
Sbjct: 1037 VALRSLRRK 1045



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 87/241 (36%), Gaps = 7/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    +          L        +++A    ++    +++   P 
Sbjct: 263 VQLQDVARIELGAREYVTNSYLNGSPAVALGIFSRPGSNALAAADAIQATMTELSRDFPE 322

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                      +   E I +    +  +A+ + + + +    W  A+  I  + + +  T
Sbjct: 323 GLEYRIIYNPTEFISESIDEVYKTIAEAALLVALVVIVFLQSWRTAIIPIVAIPVSLVGT 382

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N+  +  ++  IG  V+D +VV + + +N+      ++ R+    +++E
Sbjct: 383 FALLYAFGFSLNMLTLFGLVLAIGIVVDDAIVVVENVERNLA---RGMTPREAAHVTMDE 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  S+      +P A   G        FA+ +A   V++A +S+ ++  +   + 
Sbjct: 440 VGAAVIAISLVLTAVFVPTAFIPGIAGQFYLQFAVTIAVATVISAVNSLTLSPALAAILL 499

Query: 825 D 825
            
Sbjct: 500 R 500


>gi|297581142|ref|ZP_06943066.1| protein-export membrane protein SecD [Vibrio cholerae RC385]
 gi|297534458|gb|EFH73295.1| protein-export membrane protein SecD [Vibrio cholerae RC385]
          Length = 484

 Score =  181 bits (457), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 141/492 (28%), Positives = 262/492 (53%), Gaps = 33/492 (6%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +EVD D  +   +    +  RS L+ E I   ++R + + + ++  D+         +  
Sbjct: 2   MEVDMDAAMEKLVSQQEEAFRSDLRDEKIRYRAIRPLSDAVEVTLRDAEQLAQTKLLLES 61

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +        D       +     +    +++ + ++ ++A+EQ++ I+R R++++G++
Sbjct: 62  KHR--------DMTFTTSESDGRFVLVAKFTEDRLQEIRNYAVEQNITILRNRVNELGVA 113

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF-----GVRF 232
           E  +QR G+ RI+++LPG QD +R +++LG TA + F +V                G   
Sbjct: 114 EPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAGSEI 173

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
             D +G   +++ +V + G  +    ++   +  +P V+IS D  G  +    ++ NIGK
Sbjct: 174 KFDRNGRPVVLKKRVILGGSSITD-ASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGK 232

Query: 293 PLAVVLDGRV------------------LTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
            +A V                       +      Q+      +I+G  +   A  LA +
Sbjct: 233 LMATVFAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALL 292

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           LRAG+L   ++IVEER +G  +G  +I  G  A + G+V ++LF ++ Y K+G++A+ ++
Sbjct: 293 LRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMIANIAL 352

Query: 395 FLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
             N++L + ++S++  AT+TLP IAGIVL +G+AVD+N+L+ ERIREE R+ ++   ++ 
Sbjct: 353 MANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIH 412

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            G++ A+STI D+NIT LI  ++LF  G GA++GFA+T+ + IL SMFTAI   R ++  
Sbjct: 413 QGYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNL 472

Query: 514 IIRYKKMKSIDI 525
           +   K++  + I
Sbjct: 473 LYGGKRINKLSI 484



 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 97/248 (39%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D        + +        N    ++ L R     G           +  +   
Sbjct: 238 FAEYKDSGKRSPEGKVILTKHEEVINQATIQSALGRNFRITGIDSPAEAHNLALLLRAGA 297

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++   +I     +GP + ++ I  GI   I   +A++++  + ++  F + A   L+ ++
Sbjct: 298 LIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYR-KFGMIANIALMANL 356

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  ++  G    L  +A ++  +G +V+  V++++R+R+ ++      + +  I +
Sbjct: 357 VLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELRE---GKNPQQAIHQ 413

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                       ++   I+ + +   G   I  FA+ ++ GI+ +  ++I     I+  +
Sbjct: 414 GYANAFSTIADANITTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLL 473

Query: 824 YDWRAKNA 831
           Y  +  N 
Sbjct: 474 YGGKRINK 481


>gi|190570480|ref|YP_001974838.1| protein-export membrane protein SecF [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|213019239|ref|ZP_03335046.1| protein-export membrane protein SecF [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|190356752|emb|CAQ54111.1| protein-export membrane protein SecF [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|212995348|gb|EEB55989.1| protein-export membrane protein SecF [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 291

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 99/289 (34%), Positives = 163/289 (56%), Gaps = 10/289 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIPD + I+F + R     +S++  I S+      G+N GIDF GGI + + ++   D 
Sbjct: 4   RLIPDNLDIRFSKYRNLTALVSVILIIFSMLTFMLRGMNLGIDFTGGILIEIKSSSKDDA 63

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                 L  L+    + Q+     N +VR +    D   + ++ ++     +++  L T 
Sbjct: 64  -----ILGILKESGFTIQSSKAGDNLVVRFK----DEGDEDKIKKVKSILESKLGNLVTY 114

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  + VGP+I    I +GI  ++I+ I +  Y+W+RF W   LG I  LI D+  TLGF 
Sbjct: 115 RKIDYVGPQIGSTQIFEGISAMLIAIIGIFFYVWLRFSWQCGLGGIMALIHDVILTLGFI 174

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L  IEFN+++VAA+LT+IGYS+N+ VV+YDR+R+  K     +   +++D SIN TL R
Sbjct: 175 SLTSIEFNISSVAALLTVIGYSINNSVVIYDRIREY-KKNRKDVEMDEIVDASINSTLFR 233

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ TS    ++ LP+ +    V+  F + ++FGI +   S+IFI+APIL
Sbjct: 234 TMLTSGTTLLAALPLVLICTGVVRDFCLIISFGIAIGTCSAIFISAPIL 282


>gi|206889223|ref|YP_002249413.1| AcrB protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206889776|ref|YP_002249363.1| AcrB protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741161|gb|ACI20218.1| AcrB protein [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741714|gb|ACI20771.1| AcrB protein [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 1043

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 70/573 (12%), Positives = 166/573 (28%), Gaps = 34/573 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    +  ++   I   G L           + ++PS  P +                  
Sbjct: 7   LERPVFAWVIAIAIMGAGCLAI-----YNLPIAQYPSLAPPSIY---------IQATYPG 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
              + V   +    +E  + L +            + +I L+F      +    KV   L
Sbjct: 53  ASAETVENSVTQIIEEKMTGLDRLLYMSAVSDSSGSCRIELTFEPGTDPDLAWAKVQNKL 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q     L    +K  +         +++     +     A +    +       +   E 
Sbjct: 113 QLAMPSLPEAVQKTGISVGKATRNYLLIVSLISEDGRLDAYDLRDYLKSNVEKVLARIEG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +          +    +P +L     T + +       N    G   G    ++    
Sbjct: 173 VGEVETFGFP-YAMRIWIEPHKLVSYGLTISDVISAIKAYNVEVSGGQLGGAPAKEGQRL 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +              +  +                      +         
Sbjct: 232 NAPIIVQSML-------------KEPDEFASIPVRINPDGSSVKIKDVARVELGTDYYDI 278

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                               +     +        L          +           + 
Sbjct: 279 EAFYNGKPAAALAVRPLPGANALDVADKVKNKINELSRNFPAGVKVVYPYDTTPFTKVAI 338

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +    T      LV +++++ +   +  L+   ++ + ++ T A+L L G ++ + ++  
Sbjct: 339 NEVVKTLIEAIVLVFLIMWLFLGSLRATLIPTITVPVVLLGTFAVLGLAGYSINMLTMFA 398

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +    R+ +  V  ++     +  S  I    + + +   + 
Sbjct: 399 MVLAIGLLVDDAIVVVENVERIMREEKLPVRQAVIKSMEQITSALIGIGVVLSAVFAPMA 458

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFFLI 534
           FF G      R FAIT+  ++L+S+F A+++   + + F+  + + +    N    F LI
Sbjct: 459 FFTGSTGIIYRQFAITIISAMLLSVFVALTLAPVLCVTFLRPHSEKQRERKNIFYYFNLI 518

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
            +     F ++RF    +           +  +
Sbjct: 519 YEKFYGFFFKSRFVYTKVVENSFRKVPVYICVY 551



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 82/239 (34%), Gaps = 10/239 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V          DI           L        +++     ++    +++   P 
Sbjct: 261 VKIKDVARVELGTDYYDIEAFYNGKPAAALAVRPLPGANALDVADKVKNKINELSRNFPA 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                        ++  I + +  +I + + + + +W+        L    T+ + +  T
Sbjct: 321 GVKVVYPYDTTPFTKVAINEVVKTLIEAIVLVFLIMWLFLGSLRATLIPTITVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N+  + A++  IG  V+D +VV + +     +    +  R  + KS+ +
Sbjct: 381 FAVLGLAGYSINMLTMFAMVLAIGLLVDDAIVVVENV--ERIMREEKLPVRQAVIKSMEQ 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                +   +       PMA + GS       FAI     I+ A   S+F+A  +   +
Sbjct: 439 ITSALIGIGVVLSAVFAPMAFFTGSTGIIYRQFAIT----IISAMLLSVFVALTLAPVL 493



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/334 (12%), Positives = 98/334 (29%), Gaps = 18/334 (5%)

Query: 510  MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
             +    + +++K++  N +         I  Q   A    +         +    + +  
Sbjct: 708  FLYLANQDRRLKNVRPNGMDDIPEYKVDIDWQKAGALGVPINSINNTISAAFGSSYVNDF 767

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ----- 624
              G   K          R +   + R  + +     + F +F   K      + +     
Sbjct: 768  IKGGRVKRVYVQADTPYRMLPEDMNRLYVRNNDGKMVPFSSFASGKWIYGSPRLERYNGF 827

Query: 625  ----PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     A         K + EIV                +E +  G   ++      
Sbjct: 828  PSMNIWGEPATGTSSGEAMKAVEEIVSKLPKGVGYAWTGSSYQERLATGQAPILYGFSVF 887

Query: 681  LIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            +I++    +   W   +  +  L L I  +     L G+  ++      L  +G S  + 
Sbjct: 888  VIFLCLAALYESWTIPITNLILLPLGIFGSAVATWLMGLYNDVYFQIGFLVTMGLSSKNA 947

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++    R           F+    ++        + TS+A F  +LP+A+    G   +
Sbjct: 948  ILIIQFARD---RIKQGEEFQRATVEAATIRYRPVIMTSLALFFGILPLAIARGAGSGAM 1004

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +  + +  G++     SI       + I     
Sbjct: 1005 NAIGVAIEGGVLAGTFVSIVFVPLFFVLILKLFK 1038


>gi|317047990|ref|YP_004115638.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Pantoea
           sp. At-9b]
 gi|316949607|gb|ADU69082.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Pantoea
           sp. At-9b]
          Length = 1050

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 66/552 (11%), Positives = 150/552 (27%), Gaps = 39/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P               + +  + 
Sbjct: 10  RPIFAAVLSILIFVTGLIAI-----PLLPISEYPDVVPP-------------SVQVRAEY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                  +    +  L   +   E +         + +   T++F      +    +V  
Sbjct: 52  PGANPKVIADSVATPLEEAINGVENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L    ++  L T  +     ++           ++        +  D++   
Sbjct: 112 RVAQAEARLPEAVRQLGLTTQKQSPTLTLVVHLFSPHGKYDSLYLRNYATLKVKDELARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP+++     T + +       N        G   L+   
Sbjct: 172 PGVGQIQIFGSGEYAMRIWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLKKES 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                 I       
Sbjct: 232 DFLLSINTQGRLESEQ-------------QFGDIILKTADDGSLVRLRDVARIEMGSGSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +            A L                      
Sbjct: 279 ALRSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPDDVQWAAPYDPTVFVRD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+
Sbjct: 339 SIKAVVQTLMEAIVLVVLVVILFLQTWRASIIPLLAVPVSVVGTFSVLYLLGFSLNTLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +           I    +      V +
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIEQGLSPVAAAHQAMREVSGPIIAIALVLCAVFVPM 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + FA+T+ +S +IS   ++++  A+   +++         + L    L 
Sbjct: 459 AFLSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAKLLKAHHAPKDLPSRLIDRLLG 518

Query: 535 PDCIAIQFMRAR 546
                      R
Sbjct: 519 WLFRPFNRFFQR 530



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 87/253 (34%), Gaps = 12/253 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +       L  +R                       V +            +   V+ 
Sbjct: 252 IILKTADDGSLVRLRDVARIEMGSGSYALRSQLNNKDAVGIGIFQSPGANAIDLSNAVRA 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-----AMLIYIWIRFKWYFALG 695
           K+ E+       + +   P      +R  I  V+ + +      +L+ I     W  ++ 
Sbjct: 312 KMAEL-ATRFPDDVQWAAPYDPTVFVRDSIKAVVQTLMEAIVLVVLVVILFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 371 PLLAVPVSVVGTFSVLYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNI---EQGL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
           S      +++ E  G  +  ++      +PMA   G        FA+ +A   V++A +S
Sbjct: 428 SPVAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTVISAINS 487

Query: 813 IFIAAPILLFIYD 825
           + ++  +   +  
Sbjct: 488 LTLSPALAAKLLK 500



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 54/147 (36%), Gaps = 8/147 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPVTMLSALVGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEMQGKGIVEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGEGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++      +F+     + +     +  
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRKQ 1042


>gi|312884172|ref|ZP_07743884.1| preprotein translocase subunit SecD [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368220|gb|EFP95760.1| preprotein translocase subunit SecD [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 615

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 163/512 (31%), Positives = 268/512 (52%), Gaps = 25/512 (4%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
            F   S+  ++ S +  N I LGLDLRGG   +L VD D           DELR FL++E
Sbjct: 116 TFSYVSVAPKWFSELGFNPIKLGLDLRGGVQFLLNVDIDKAFEDQRNSLIDELRDFLRQE 175

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            +    +       T SF       +  +K   FL+        +           K +S
Sbjct: 176 HLRNVQI---NATTTDSFEVKSASSDALNKAGKFLK--------ENYPTWSTIRHSKYLS 224

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +  +  +  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDP+  ++
Sbjct: 225 VKPTVESKSEFQTVTIKQNLKIMRDRIEELGITEAMVQRQGDHAIRIELPGVQDPTLAKK 284

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA ++FH+     S  G  +G   L+D+D     +  +  ++G H+  A A  D  
Sbjct: 285 VIGATATLAFHEA--RGSSDGKAYGDIVLKDNDNRDVTLAKRPVLTGEHITNARAGVDKV 342

Query: 265 THKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
               V        G            +    V R+         +    + +    Q+  
Sbjct: 343 GFSEVNISLDHAGGKIMSDFSGSHVGKPMATVYREYTTNAKGETVRSERVISVATIQSQL 402

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  GL 
Sbjct: 403 GSQFRITGAGSMEDAQNLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALGLGLA 462

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNI 432
           + + FM + Y K G VA+ ++ +N++  L L++LL  A LTLP IAG+VL +G+AVD+N+
Sbjct: 463 MTLTFMALWYRKLGWVANVALMINMVSLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNV 522

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+ ERI+++ R+ ++   S+D+GF  A+STI D+NIT +I  VVL+  G G ++GFA+T+
Sbjct: 523 LIFERIKDKLREGRTFAQSIDLGFDSAFSTILDANITTMITAVVLYSIGNGPIQGFALTL 582

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GL +L SMF+ +   RAM+  +      + + 
Sbjct: 583 GLGLLTSMFSGVFASRAMINLMWGRDARRDVR 614



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 77/176 (43%), Gaps = 5/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +G  +  E I  G   + +     L ++ + ++      A   L++++   LG  AL  
Sbjct: 440 TIGASLGAENIENGFAALGLGLAMTLTFMALWYR-KLGWVANVALMINMVSLLGLIALLP 498

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  ++      +F   ID   +      + 
Sbjct: 499 GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLRE---GRTFAQSIDLGFDSAFSTILD 555

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++   I+ + +   G   I  FA+ +  G++ +  S +F +  ++  ++   A+ 
Sbjct: 556 ANITTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFSGVFASRAMINLMWGRDARR 611


>gi|94676707|ref|YP_589027.1| protein-export membrane protein SecF [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94219857|gb|ABF14016.1| protein-export membrane protein SecF [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 306

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 87/289 (30%), Positives = 164/289 (56%), Gaps = 6/289 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR  F     S++  + SI ++F  G N+G+DF GG  + +   + +D+  +R  +E
Sbjct: 19  YDFMRWSFIAFSSSVILFLASIIVIFMQGFNWGLDFTGGTIVELHLEQTIDIDQIRKAIE 78

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                +   QNF   ++ +VR+ +      A     ++            T++  E+VGP
Sbjct: 79  QSGFKEAIVQNFGSSQDIIVRMPFM-----ANNIERKITSVVNEVTQQNITVKRVEVVGP 133

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            +S +L++ G + ++++ I + IY+  RF+W  A G +  LI D+  TLG  ++F IE  
Sbjct: 134 SVSNDLLQTGSIALLLAIICIFIYVIFRFEWRLATGTVLALIHDVVITLGLLSVFKIEIE 193

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            T +A+++++IGYS+ND +VV DR+R+N ++ ++S ++ DL + SI + L R++ TS+  
Sbjct: 194 STIIASLISVIGYSLNDSIVVSDRIRENFRVISSSNTY-DLFNISITQVLNRTIITSVIT 252

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              VL + ++GGS++ SF+I +  G+++   SSI++A+ + L +   R 
Sbjct: 253 MTVVLILIIFGGSMLRSFSITLFIGVLIGTISSIYVASALALKLGIKRE 301


>gi|186683982|ref|YP_001867178.1| preprotein translocase subunit SecF [Nostoc punctiforme PCC 73102]
 gi|186466434|gb|ACC82235.1| protein-export membrane protein SecF [Nostoc punctiforme PCC 73102]
          Length = 328

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 157/312 (50%), Gaps = 24/312 (7%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL--------NYGIDFKGGIQLGV------ 583
           + +   ++R     IS    +  I  +               G+DF GG +L        
Sbjct: 1   MKLSINKSRSLWWTISAAIILAGIISMVISWQQPNIHAPLRPGLDFIGGTRLQFVRDCTK 60

Query: 584 --LANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKK 640
               ++P++++ VR   ++  +GD S Q          V ++ +      +T++   + +
Sbjct: 61  PGNCDKPININAVREVAKAQGLGDSSIQLISENGAENGVLIRTKDLTVDQRTKLQNSLSE 120

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           +I    P       + VGP + +EL+R G++ +I+S I + IY+  RF+  +A+ AI  L
Sbjct: 121 EIGVFDP--QKNQIDSVGPTLGKELLRSGLLALIVSFIGITIYMSFRFQLDYAVFAIVAL 178

Query: 701 ILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             DI  T+G F++ G    IE +   + A+LT+ G+SVND VV+YDR+R+ +K+      
Sbjct: 179 FHDILITVGAFSILGLVAGIEVDSLFIVALLTITGFSVNDTVVIYDRIRETIKINP-EHP 237

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +++D ++N+TL RS+ T++   +++  + ++GG  +  FA+ +  G  + A SSIFIA
Sbjct: 238 IAEIVDDAVNQTLTRSINTTLTVLLTLTSIFLFGGETLRYFALALIIGFTMGAYSSIFIA 297

Query: 817 APILLFIYDWRA 828
           + +L +  +   
Sbjct: 298 STLLTWWRERDE 309


>gi|188584209|ref|YP_001927654.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium populi BJ001]
 gi|179347707|gb|ACB83119.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium populi BJ001]
          Length = 1074

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/540 (11%), Positives = 150/540 (27%), Gaps = 40/540 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +   +   +G +        +  + ++P  +P               + +    
Sbjct: 10  RPIFASVTSIVFLILGFVA-----YEKLPVSQYPEIVPPT-------------VTVRASF 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +       L   +     +   +     +    +T++F      +     V  
Sbjct: 52  PGANAETVAATIATPLEQEINGVDNMLYMTSLSTNDGAMLLTVTFKVGTNLDIANVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L  D +   +         +++      +        +  I     D++   
Sbjct: 112 RLSVAQPRLPPDVRNLGVTVRKASPDLMLVVHLLSPKRTYDQNYLANYIYLNIRDELLRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +                   DP ++     TT  ++      N                 
Sbjct: 172 DGVGDISIFGGNEYAERVWIDPQKMAAYGLTTTDVTSALQEQNVQVAAGQLNGPPAAPGA 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q +V+ +                 ++ +   D+       R         +       
Sbjct: 232 AFQLVVQSQGR--------------FQSPEQFADVIAKASDGRLVRVRDIARVEMGQKDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +     E+       L+    P     +          
Sbjct: 278 TTNSFLNDTPAVGIGAFQRPGTNALEAAESVKATMEELKKRFPPDVEYRIAYNPTEFIEE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+ + +   +  L+   +I ++++ T A++S LG +L   ++
Sbjct: 338 SIHEVYKTLFEAVLLVVIVVLVFLQSWRTALIPVIAIPVSLVGTFAVMSALGFSLNNLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +           +    +      +  
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERNMAEGLSPGEAAHKTMDEVGGAVIAIALVLAAVFIPT 457

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + FA+T+  S +IS F ++++  A+   +++           L+RF   
Sbjct: 458 AFIPGISGQFYKQFALTIAASTIISAFNSLTLSPALCKLLLKPHHEHRPPKFFLTRFVNW 517



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 12/152 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  +   +   L    L G + N+     ++ LIG +  + +++ +      
Sbjct: 903  SWALPLAILLVVPTGVLAALFGVQLRGQDNNILTQIGLIVLIGLAAKNAILIVEFAHDIE 962

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +         D   ++    L   + T+ A  + VLP+ +    G  +  +    + FG+
Sbjct: 963  ESEHKG--PVDAAVQACRLRLRPILMTAFAFILGVLPLVIATGPGAEMRQALGTAVFFGM 1020

Query: 806  VVAASSSIFIAAPI-------LLFIYDWRAKN 830
            + A    +F+           +++I   R K+
Sbjct: 1021 IGATFFGLFLTPVFYVVIRKAVIWIGRKRGKD 1052



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 60/145 (41%), Gaps = 16/145 (11%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  AL  +  + + +  T    +  G   N   +  ++  IG  V+D +VV + + +NM
Sbjct: 363 SWRTALIPVIAIPVSLVGTFAVMSALGFSLNNLTLFGLVLAIGIVVDDAIVVVENVERNM 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSM--------AAFISVLPMAVWGGSVIGSFAIP 800
                 +S  +   K+++E  G  +  ++         AFI  +      G     FA+ 
Sbjct: 423 AE---GLSPGEAAHKTMDEVGGAVIAIALVLAAVFIPTAFIPGIS-----GQFYKQFALT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           +A   +++A +S+ ++  +   +  
Sbjct: 475 IAASTIISAFNSLTLSPALCKLLLK 499



 Score = 42.4 bits (97), Expect = 0.34,   Method: Composition-based stats.
 Identities = 54/538 (10%), Positives = 122/538 (22%), Gaps = 36/538 (6%)

Query: 9    ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            ++  +I    ++    +    +     P       I        G   +      D    
Sbjct: 547  VIAMLIVYAAVIAGTLHLARTTPTGFIPDQDQGYLI--------GVVQLPSGSSLDRTTE 598

Query: 69   FLQMYSDELRSFLKKE-------GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +   +   R  +          G    +     N   +       KE  A         
Sbjct: 599  VVNRAAAIARK-IDGITNTVIIAGFDGATFTNTTNAAVMFLTLKNSKERAAQ--GRSAAV 655

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +   +                   V               +    I   +   G      
Sbjct: 656  ITGDVMKATAGIQEARVIVIPPPPVRGLGQGGGFKMQIESRQSSDIGPLLAAAGEVMGQA 715

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +      +        P     +  T A+M    +    S      G  ++ D   N  
Sbjct: 716  NQSKDVTRVFTTFSNDTPQLYLDIDRTIARMLNVPLANVFSTVQTALGGAYVNDF--NTL 773

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +V + G  +          + + +  +             T  +I +     +  R
Sbjct: 774  GRIYQVRVQGDAVYRM-------SQRDIEQLKVRSSTGALVPMGTLASIREISGPQIVQR 826

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +     +     +G      A      +   +LP   +            +   
Sbjct: 827  FNLYYSVPLQGVAQAGVSTG-----QALDTMEEIAKRALPEGYSYDWTEIAFQQKAAGGT 881

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 A+   LV +VL          L     +   V+  L  + L G    + +  G++
Sbjct: 882  AIYVFALGVLLVFLVLAAQYESWALPLAILLVVPTGVLAALFGVQLRGQDNNILTQIGLI 941

Query: 422  LGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            + IGLA  + IL+ E   +           +           I  +    ++  + L   
Sbjct: 942  VLIGLAAKNAILIVEFAHDIEESEHKGPVDAAVQACRLRLRPILMTAFAFILGVLPLVIA 1001

Query: 480  --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
               G    +     +   ++ + F  + +     + I +                   
Sbjct: 1002 TGPGAEMRQALGTAVFFGMIGATFFGLFLTPVFYVVIRKAVIWIGRKRGKDPHSHDPH 1059


>gi|94968097|ref|YP_590145.1| hydrophobe/amphiphile efflux-1 HAE1 [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550147|gb|ABF40071.1| Hydrophobe/amphiphile efflux-1 HAE1 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1059

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 72/529 (13%), Positives = 155/529 (29%), Gaps = 41/529 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I   G +       P   +  +P   P               + +  +
Sbjct: 7   KRPIFATVCALLIILAGAVCI-----PTLPISLYPELAPP-------------QVTVTSN 48

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   +        I   S     + I ++F         A  V 
Sbjct: 49  YVGANAQVVESAVTTPLEQQINGVEGMHYISSTSSNDGTSSINVTFRTGYDLNIAAVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  + K   +  T      +  +              S  +     D +  
Sbjct: 109 NRVAAAQGRLPQEIKNTGVTITKANPNFVFAAGFYSPDNTLSNQYISNYLDVYVKDALKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +     +        +    DP++L     T A +       N        G       
Sbjct: 169 IQGVGDVVIFGERKYAMRIWLDPTKLAARQLTAADVVAALQEQNVEIPAGQLGRPPADPK 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +     +S                +   DI                +       
Sbjct: 229 QNFQVTLRAVGRLS--------------DPREFEDIILKSTKNGIVQLKDVGHAEVGAEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                + +            +  +     + A    A L     P    +V         
Sbjct: 275 YDTNLLYSGHEAIGIGVQQLSNANALEVDKAAKAELAELSKSFPPGIKYVVAFDTTTVVG 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      +V+IV+F+ +L  +  ++   +I +++I T A + + G ++   +
Sbjct: 335 DSVKEVITTLEEAVLIVIIVIFLFLLDWRATIIPAVTIPVSLIGTFAFIKMFGFSINSLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + GI L  GL VD  I+V E  +    ++      +  +  +   S +  +++  +   V
Sbjct: 395 LFGITLATGLVVDDAIVVIENAQRHINQDHTDPHRATSVAMAEVSSAVVATSLVLISVFV 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            + FF G      R F++T+  SI IS+F A+++  A+   ++R ++ K
Sbjct: 455 PVSFFPGTTGILYRQFSLTIAFSIAISLFNALTLSPALAAILLRSEEKK 503



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 85/247 (34%), Gaps = 9/247 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V  + V +      +     +        L        D  A+  + E+ K     I 
Sbjct: 263 KDVGHAEVGAENYDTNLLYSGHEAIGIGVQQLSNANALEVDKAAKAELAELSKSFPPGIK 322

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            +     T +VG  +   +       V+I  I + +++     W   +    T+ + +  
Sbjct: 323 YVVAFDTTTVVGDSVKEVITT-LEEAVLIVIIVIFLFLL---DWRATIIPAVTIPVSLIG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T  F  +FG   N   +  +    G  V+D +VV +       +             ++ 
Sbjct: 379 TFAFIKMFGFSINSLTLFGITLATGLVVDDAIVVIENA--QRHINQDHTDPHRATSVAMA 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     V TS+      +P++ + G+       F++ +AF I ++  +++ ++  +   +
Sbjct: 437 EVSSAVVATSLVLISVFVPVSFFPGTTGILYRQFSLTIAFSIAISLFNALTLSPALAAIL 496

Query: 824 YDWRAKN 830
                K 
Sbjct: 497 LRSEEKK 503



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 75/192 (39%), Gaps = 10/192 (5%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI-YIWI---RFKWYFALG 695
            + + E+   + IQ        ++ E +  G   ++I A+ +L+ Y+ +      +     
Sbjct: 850  EAMQELAHQNMIQGMSFQWSGLALEEVEAGGKAILIFALGILVVYLTLSAQYESFALPFI 909

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             +  +   +   L F +L G+  ++     ++ LIG S  + +++ +   + +       
Sbjct: 910  ILLAVPTAVLGALSFISLRGLVNDVYVQIGLVMLIGLSAKNSILIVE-FAEQL--IEQGR 966

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSS 812
            S  +   ++    L   + TS A  + VLP+    G   I   S    +  G++ +   +
Sbjct: 967  SITEAAIEAGELRLRPILMTSFAFILGVLPLYFATGAGKIGRHSVGTAIVGGMLFSTVLN 1026

Query: 813  IFIAAPILLFIY 824
            +     + + + 
Sbjct: 1027 LIFIPVLYVIVK 1038


>gi|38233956|ref|NP_939723.1| preprotein translocase subunit SecF [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200218|emb|CAE49902.1| Putative protein export membrane protein [Corynebacterium
           diphtheriae]
          Length = 370

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 135/303 (44%), Gaps = 11/303 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           + F+  R      +++        +   G + GIDF GG ++ + A +     V  +  +
Sbjct: 17  LDFVGRRRTWYRTTLIIVAICFIAIAVRGFSLGIDFVGGTKMNMPAAQLETSEVADTFKD 76

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTIQNTE 655
           +  I     Q        ++ +  +       ++    + +K   +     P        
Sbjct: 77  ATGIEPELVQIVGSGDTRILEINSERLSEDQISQARVALFEKYQPVGSQGQPTPDAIGDS 136

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V       + ++ ++ + +   A+ +YI +R +   A+ AI  L++D+    G +AL G
Sbjct: 137 TVSESWGSTITQRMLISMFVFLAAVFVYITVRLEKEMAVAAIVALLVDLIVISGVYALVG 196

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLIDKSINETLGRSV 773
            E +   +  +LT++ +S+ D V+V+D++R+N   Y    + ++ +  + ++N+T+ RS+
Sbjct: 197 FEVSPATIIGLLTVLAFSLYDTVIVFDKVRENTAGYLGNRTRTYAEHANLAVNQTVMRSI 256

Query: 774 YTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            T++ + + ++ +      + G   +   A+    G++    SS+F+A PIL+ + +   
Sbjct: 257 STTIISALPIIALIVIAVWLMGVGTLKDLALVQLIGVIEGTFSSVFLATPILVSLKNRSK 316

Query: 829 KNA 831
           K A
Sbjct: 317 KTA 319


>gi|78776735|ref|YP_393050.1| resistance-nodulation-cell division family transporter
           [Sulfurimonas denitrificans DSM 1251]
 gi|78497275|gb|ABB43815.1| Resistance-Nodulation-Cell Division Superfamily transporter
           [Sulfurimonas denitrificans DSM 1251]
          Length = 1034

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 88/682 (12%), Positives = 203/682 (29%), Gaps = 47/682 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I   G++      +    +  +P  +P               +V+   
Sbjct: 8   KRPVFASVISILIVLAGVIA-----MRSLPIGEYPRVIPP-------------QIVVTAT 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L   +   + +   S     N    I++ F      ++    V 
Sbjct: 50  YQGASAQTISKTVAAPLEEQINGAKDMLYMSSIAADNGTLSISIFFKVGTNPDDAKIDVN 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   S+L    K+  +    +    + +   N  +        S   +   +D +  
Sbjct: 110 NRVQAALSRLPEQVKRQGVRVNEKSPDMLQVIILNSPKQSRDVGFLSNYALMNIVDDLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    DPS+L++   T + +       N            + + 
Sbjct: 170 VKGIGDVTIFGAKDYSMRVWIDPSKLKKYSLTVSDLVTSIQEQNEQYAAGKLAAEPISNK 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +   Y +E                      +    I                 I      
Sbjct: 230 EMFTYTIETPQR-------------FDDPSQFSEIIVRANEDGSSLKLKDVATIELGSQS 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L        +   ++  +   T +      A +    +     ++         
Sbjct: 277 YDMKNKLNNVPAVPILIFLQSGANAIETAKEVRKTIASISENFVEDVEYVIPYDITDFVQ 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S +    T      LV++++F+ +   +  L+   ++ ++++   A + +LG ++ L +
Sbjct: 337 ISINEVIKTFVEAIILVILIIFLFLQNFRATLIPVLAVPVSIVGAFAGMYMLGFSINLLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIA 473
           + G+VL IG+ VD  I+V E +    ++  S   +          A   I        + 
Sbjct: 397 LFGLVLAIGIVVDDAIIVIENVERHIKEGLSPKEASIKAMQEVSGALIAIVLVLSAVFLP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   R FA+T+ +S+ IS   A+++  A+   +++              F  
Sbjct: 457 VAFLGGLSGEMYRQFAVTIVISLAISGLVALTLTPALCALMLKPIH--KEPKYFFKWFNN 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG------VLANR 587
             D     +  A    V  S L  +    L++     +     G +         V +  
Sbjct: 515 FFDSATRGYSNALKLTVRYSFLSMLLFGGLIYITYDMFINLKTGLVPTEDKGTVFVFSYN 574

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   S+ R+   + +I +I+ +  +  KN +            +T     + K       
Sbjct: 575 PPSASLSRTETLTSEIYEIASKEKESIKNIVQFAGIDFVTFSQRTNSAATILKLQPWDER 634

Query: 648 LSTIQNTEIVGPKISRELIRKG 669
               Q+   +   IS++L R  
Sbjct: 635 KDPTQHASYIAADISKKLSRTS 656



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 70/180 (38%), Gaps = 7/180 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
             I      +++   G +  I   I + + +  ++ +W   +  I  +   I   +    L
Sbjct: 856  WIGTAYQEKQISSAGNLAFIFGIIFLYLILAAQYERWLMPIAVILAVPFGIFGAVVANHL 915

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+E ++     +L L G S  + +++ +     M+     +   + + ++    L   +
Sbjct: 916  RGLENDIYFQIGILVLAGLSAKNAILIVEFA---MQKRAQGMELVEAVLEAAKIRLRPII 972

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS+A  + V+P+A+    G +   S    +  G++ A   +I       + +   R K 
Sbjct: 973  MTSLAFTLGVIPLAISSGAGAASRHSIGTGVVGGMLAATFLAIVFIPLFYILVSKIRNKK 1032



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L  +  + + I        + G   NL  +  ++  IG  V+D ++V + +    +
Sbjct: 364 FRATLIPVLAVPVSIVGAFAGMYMLGFSINLLTLFGLVLAIGIVVDDAIIVIENV---ER 420

Query: 750 LYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
                +S ++   K++ E    L   V    A F+ V  +    G +   FA+ +   + 
Sbjct: 421 HIKEGLSPKEASIKAMQEVSGALIAIVLVLSAVFLPVAFLGGLSGEMYRQFAVTIVISLA 480

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           ++   ++ +   +   +     K  +
Sbjct: 481 ISGLVALTLTPALCALMLKPIHKEPK 506


>gi|284032301|ref|YP_003382232.1| protein-export membrane protein SecF [Kribbella flavida DSM 17836]
 gi|283811594|gb|ADB33433.1| protein-export membrane protein SecF [Kribbella flavida DSM 17836]
          Length = 400

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 71/303 (23%), Positives = 134/303 (44%), Gaps = 10/303 (3%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L    I+  F+  R     +S++    S+  LF  GL  GI+FKGG  +   AN  V  S
Sbjct: 11  LHRGEISYDFVGKRKLWFTVSLVLVAISLLGLFARGLALGIEFKGG--VEYQANVKVTDS 68

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V     +++  +                       ++Q  + ++      E        
Sbjct: 69  TVDDFSNAVKATNAEDLGDPVVTTIGTDKVRVQTRPLSQDDITKVRAAIAQEAGVQPNQV 128

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +   +G     ++  K I  +++    + + IW  F+    ++ AI  L+ D+  T+G +
Sbjct: 129 SNSQIGASWGDQIANKAIWALVVFLFLVFLVIWAYFREPKASMAAIIALVHDVLITIGVY 188

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETL 769
           AL G +     V  VLT++GYS+ D VVV+D++R+N +    +   ++ D  + ++N+T+
Sbjct: 189 ALVGFDVTPATVIGVLTILGYSLYDTVVVFDKVRENTRGITGSNRQTYSDAANLAVNQTV 248

Query: 770 GRSVYTSMAAFISVLPMA-----VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ T++ A + V  +      V G   +   ++ +  GI + A SS+FIA  +L    
Sbjct: 249 VRSINTTLIALMPVGSILVVGTVVLGTGPLKDLSLALFVGIAIGAYSSVFIAPALLAAFK 308

Query: 825 DWR 827
           +  
Sbjct: 309 ERE 311


>gi|325293837|ref|YP_004279701.1| AcrB/AcrD/AcrF family [Agrobacterium sp. H13-3]
 gi|325061690|gb|ADY65381.1| AcrB/AcrD/AcrF family [Agrobacterium sp. H13-3]
          Length = 1064

 Score =  181 bits (457), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 60/552 (10%), Positives = 144/552 (26%), Gaps = 30/552 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL      +    +  +P  +P + +                  
Sbjct: 10  RPVFAGVLSILIVVAGLL-----GMRALPISEYPEVVPPSIV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PAVIAETVATPLEEQINGVEDMLYMGSQATSDGVLTLTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T       I++                        D++   E   
Sbjct: 116 AEPRLPAEVRALGITTVKSSPDFIMVVNLVSKTDAYDITYLRNYATLNVKDRLARIEGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +     + +S      N      + G     +    Q 
Sbjct: 176 QVQVFGAGDYSMRVWLDPQKVAEHDLAASDVSDAIRQQNVQAAAGVIGASPSPNGVDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  ++                +    I       +         I    A      
Sbjct: 236 NVNAQGRLT-------------TPEEFGNIIVKSGANGQITRLRDVARIELGAADYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 283 LLDGEPAVAIAVLQAPGSNSIEIADNVRATMDNLQLAMPDGVKYEIVYDTTKFVRSSIEK 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T     GLV++V+ + +   +  ++   ++ +++I T A++   G ++   ++ G+V
Sbjct: 343 VVDTLLEAVGLVVLVVILFLQTWRASIIPLIAVPVSIIGTFAVMYAFGFSINALTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLSPRDATYKAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G + + +        + ++ +A  +    +   +    +K  D         +       
Sbjct: 463 GLSGQFYRQFALTIAISTVISA--VNSLTLSPALAALLLKEHDAPKDWLTRFMDRIFGWF 520

Query: 542 FMRARFWGVGIS 553
           F          S
Sbjct: 521 FRGFNRAFGAAS 532



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 +  I  + L +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPIAIILIVPLGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+ +    G  +  +  + +  G+
Sbjct: 960  -LEFEGRTPLQAAVEASRLRLRPILMTSLAFIMGVVPLVISTGAGAEMRAAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      IF+     + +       
Sbjct: 1019 IGVTFFGIFMTPVFYVLVRKLSGNR 1043



 Score = 45.5 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T      FG   N   +  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---IAVPVSIIGTFAVMYAFGFSINALTLFGLVLAIGIVVDDAIVVVENVERNI---E 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S RD   K++ E  G  +  ++      +P+A      G     FA+ +A   V++A
Sbjct: 425 NGLSPRDATYKAMREVSGPIIAIALVLVAVFVPLAFISGLSGQFYRQFALTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 VNS 487


>gi|104781429|ref|YP_607927.1| acridine efflux pump [Pseudomonas entomophila L48]
 gi|95110416|emb|CAK15124.1| acridine efflux pump (RND family) [Pseudomonas entomophila L48]
          Length = 1059

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 75/595 (12%), Positives = 162/595 (27%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLVLLIAGSISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   I    D++       
Sbjct: 116 TQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T + +       N        G      S   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    +      
Sbjct: 236 SINTQGRLVNEE-------------EFENIIIRAGANGEITRLKDIARVELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +     +      A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIEISDEVRAKMAELKKEFPEGMDYSIVYDPTVFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+V
Sbjct: 343 VVHTLFEALILVVLVVILFLQTWRASIIPLMAVPVSLIGTFAVMHLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     S     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKDHHAPKDRFSRFLEKLLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F RA    VG        S   LF +    G+ + G            D
Sbjct: 523 APFNRFFDRASHGYVGGVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQD 577



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 73/218 (33%), Gaps = 10/218 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS---- 676
            +  +   + A        +  I +++              ++ + I  G   + +     
Sbjct: 831  ITAEINGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALFVFPLCV 890

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +A L+       W   L  I  + + +   +    + G + N+     ++ L+G +  +
Sbjct: 891  LLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKN 950

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ +  +         +     + ++    L   + TS+A  + V+P+      G  +
Sbjct: 951  AILIVEFAKDEQA---KGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEM 1007

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +  + +  G++      +F+       I  +  +  
Sbjct: 1008 RHAMGVAVFSGMIGVTVFGLFLTPVFFFLIRRFVERRQ 1045



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 87/236 (36%), Gaps = 17/236 (7%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L +     I      G     +  + +   +  +    E +   I     +    
Sbjct: 279 ALRSLLNNQPAVAIPIFQRPGSNAIEISDEVRAKMAELKKEFPEGMDYSIVYDPTVFVRG 338

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E V   +   LI   +V ++               W  ++  +  + + +  T     
Sbjct: 339 SIEAVVHTLFEALILVVLVVIL-----------FLQTWRASIIPLMAVPVSLIGTFAVMH 387

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG   N  ++  ++  IG  V+D +VV + + +N+ L        +   K+++E  G  
Sbjct: 388 LFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIGLGLK---PLEATQKAMSEVTGPI 444

Query: 773 VYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + T++      +    + G  G     FA+ +A   V++A +S+ ++  +   +  
Sbjct: 445 IATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK 500


>gi|15889810|ref|NP_355491.1| RND multidrug efflux transporter [Agrobacterium tumefaciens str.
           C58]
 gi|15157740|gb|AAK88276.1| RND multidrug efflux transporter [Agrobacterium tumefaciens str.
           C58]
          Length = 1029

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 83/685 (12%), Positives = 186/685 (27%), Gaps = 40/685 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P                     
Sbjct: 7   RRPVFAWVIAIVIMLGGVLAIW-----TLSISQYPDIAPTTVR---------VSATYNGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + L        S      ++TL+F +S   +    +V   LQ 
Sbjct: 53  SAETVEKSVTTIIEDGMTGLDDLTYMTSSSSTGSAEVTLTFGNSILPDIAQVQVQNKLQL 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    ++  L  +      +++          ++ +       +  DQI   E   
Sbjct: 113 VQSQLPDTVQQQGLQVSRSTSSILMVGALISTDGKRNSADLGDVFSSRVEDQIKRLEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +   TTA ++      N        G            
Sbjct: 173 SINVFGS-EYAMRIWLDPFKLNKYQLTTADVTGAIQSQNTQVSVGSLGAVPAVKGQQLNV 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + +++                     I   E             I           
Sbjct: 232 TVTAQSQLT-------------TVADFEKVILKVEKDGATVRLSDVARIEIGQETYGGDS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T          +                      S   
Sbjct: 279 RSNGRPSAGFAVNLATGANALDTAARVKAALTNVEGSLPEGVSIEYPYDTTPFVKLSIEK 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +VL + +   +   +   ++ + ++ T  +L+L G ++   ++  +V
Sbjct: 339 VVHTLIEAIILVFVVLLVFLQNLRATFIPMIAVPVVLLGTFGVLALTGYSINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   + +         I    +      + + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERIMSEEGLSPVEATEKSMGEITGAIIGIALVLTAVFIPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++L+S   AI +  A+   +++          P + F      
Sbjct: 459 GGSTGIIYRQFSITIVSAMLLSAVVAIVLTPALCATMLKPIDHHKKKRGPGAWFNRGFGK 518

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNY--------GIDFKGGIQLGVLANRPV 589
               ++ +  + +   +   I    ++      +          + +G +   +      
Sbjct: 519 TTDGYVSSIGYLLKRPLRVMIIFAVVIGGCVWFFSKLPSSFLPQEDQGVLLTIIQTPTGS 578

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++      ++ ++      +  + E  F V      G       V   +K       P  
Sbjct: 579 NIERTNEVVKQVENYFREKEAANVESVFGVLGFSFSGSGQNNAIVFTKLKDFAERTAPDQ 638

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
                               +  ++
Sbjct: 639 HAGAIVQRAMGTFFGFRDAQVFPLL 663



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 47/431 (10%), Positives = 124/431 (28%), Gaps = 21/431 (4%)

Query: 415  PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
                 +      +  +N +V  ++++   +      +      RA  T F      +   
Sbjct: 604  SVFGVLGFSFSGSGQNNAIVFTKLKDFAERTAPDQHA-GAIVQRAMGTFFGFRDAQVFPL 662

Query: 475  VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            +     G G   GF+    +    +   A++     +I +       S   +        
Sbjct: 663  LPPAIQGMGTSSGFS-MYLVDSGRNGTDALTASSKELIALATGNPKISSLRSDSQDNETQ 721

Query: 535  PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +  Q           S+   + +I                 + +   A   +    +
Sbjct: 722  MKIVLDQEKMGAMGVDLSSVNLMLSTIFAGRDVNDFTLNGELKPVYVQGDAPYRMQPDDL 781

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +        G++   +   E  ++         +      LE                  
Sbjct: 782  KYWYARNTTGEMVPFSSFSEVKWVNAPPSLARFNGTGAISLEGTAGTGVASGEAMDEMER 841

Query: 655  EIVGPKISRELIRKGI----------VGVIISAIAMLIYI---WIRFKWYFALGAITTLI 701
                      +  +GI            ++ +   +++++    +   W      I  + 
Sbjct: 842  LTASLPGGYTVAWQGISYQERLSGSQAPMLYALSVLIVFLCLAALYESWSIPFSVILAVP 901

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + +   L     FG   ++     +LT IG +  + +++ +  ++        +S  +  
Sbjct: 902  VGVLGALTAAHFFGQTNDVYFKVGLLTTIGLAAKNAILIVEFAKE---RQEHGLSLVEAA 958

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + TS+A  + V+P+A+    G +   +  I +  G++ A    IF    
Sbjct: 959  LEAAKLRLRPIIMTSLAFILGVVPLAIATGAGSAAQNAIGIGVLGGMLSATLLGIFFVPS 1018

Query: 819  ILLFIYDWRAK 829
              + I     +
Sbjct: 1019 FFVIIRRLSRR 1029



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
                  +  + + +  T G  AL G   N   + A++  IG  V+D +VV + +     
Sbjct: 361 LRATFIPMIAVPVVLLGTFGVLALTGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERI 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S  +  +KS+ E  G  +  ++      +PMA +GGS       F+I +   ++
Sbjct: 419 MSEEGLSPVEATEKSMGEITGAIIGIALVLTAVFIPMAFFGGSTGIIYRQFSITIVSAML 478

Query: 807 VAASSSIFIAAPI 819
           ++A  +I +   +
Sbjct: 479 LSAVVAIVLTPAL 491



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 62/535 (11%), Positives = 140/535 (26%), Gaps = 59/535 (11%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            ++    ++I+++++    +      F  +      P                G  L +  
Sbjct: 531  LKRPLRVMIIFAVVIGGCVW-----FFSKLPSSFLPQEDQ------------GVLLTIIQ 573

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-----------RQIQNKITLS----FADS 105
                           ++ ++ +++                      N I  +    FA+ 
Sbjct: 574  TPTGSNIERTNEVVKQVENYFREKEAANVESVFGVLGFSFSGSGQNNAIVFTKLKDFAER 633

Query: 106  RFKEN-IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
               +      V   +       +      L         S   S   +D   +     + 
Sbjct: 634  TAPDQHAGAIVQRAMGTFFGFRDAQVFPLLPPAIQGMGTSSGFSMYLVDSGRNGTDALTA 693

Query: 165  EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK 224
                      G  + +  R  S     Q+    D  ++  +    + ++         + 
Sbjct: 694  SSKELIALATGNPKISSLRSDSQDNETQMKIVLDQEKMGAMGVDLSSVNLMLSTIFAGRD 753

Query: 225  GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
                       +D         V + G        +     +                  
Sbjct: 754  V----------NDFTLNGELKPVYVQGDAPYRMQPDDLKYWYA-------RNTTGEMVPF 796

Query: 285  VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
             +   +    A     R      I+    +G    SG    E   + A++    ++  + 
Sbjct: 797  SSFSEVKWVNAPPSLARFNGTGAISLEGTAGTGVASGEAMDEMERLTASLPGGYTVAWQG 856

Query: 345  NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
               +ER  G      S      A+   +V + L  +            ++ + V+  L  
Sbjct: 857  ISYQERLSG------SQAPMLYALSVLIVFLCLAALYESWSIPFSVILAVPVGVLGALTA 910

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
                G T  +    G++  IGLA  + IL+ E  +E      S+  +           I 
Sbjct: 911  AHFFGQTNDVYFKVGLLTTIGLAAKNAILIVEFAKERQEHGLSLVEAALEAAKLRLRPII 970

Query: 465  DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
             +++  ++  V L      G  A     I +   +L +    I  V +  + I R
Sbjct: 971  MTSLAFILGVVPLAIATGAGSAAQNAIGIGVLGGMLSATLLGIFFVPSFFVIIRR 1025


>gi|330822018|ref|YP_004350880.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia gladioli BSR3]
 gi|327374013|gb|AEA65368.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia gladioli BSR3]
          Length = 1105

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 71/517 (13%), Positives = 143/517 (27%), Gaps = 33/517 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   GLL       PQ  + ++P   P   +                  
Sbjct: 8   RPVFAWIVALAIVVAGLLAI-----PQLPVAQYPRLAPPRVV---------VSATYPGAA 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V+  +    +E    +        +     N +I ++FA     +     V   L+ 
Sbjct: 54  PETVDEDVASIIEESLDGIDNLQFYETNSDNHGNLEIDVTFAPGTNPDIAVVDVQNRLKQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L     +  +         ++L           +      + R  + +I       
Sbjct: 114 VEPRLPQQVVQQGISVFKSANTFLMLVTLASKDGRQDSTSLGDFLTRNLLREIKRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + L    +P +LR+       +       N +      G            
Sbjct: 174 SAQLWDA-DVALRIWLEPDKLREFGLGADDVIAAVGAQNVAVTAGAIGDAPFEPGQQMTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K +++                +    +   +             +           
Sbjct: 233 SVIVKGQLA-------------SPAEFGRIVLKAKPDGSAVRLADVARVEIGRDDYSYWS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L              + +   T          L           V          +   
Sbjct: 280 RLNGKPAAAVGVQLGPRGNALDTSNAIRERIGELSRRLPAGAQIRVPFDGAHFVRIAIDE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+++ +   ++ LV    I + ++     + + G ++ + ++ G+V
Sbjct: 340 VVLTLAEAVVLVFLVMWVFLRGLRYTLVPTVVIPVTLMGAFVAMWIFGLSINVFTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +         S   +      R    I           V + FF
Sbjct: 400 LAIGILVDDAIVVVESVHRIMEDEGLSPREATRRAMKRIGGAIVGVTAVLTAVFVPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               GG  R F+I M  S+ +S F A+S+  A+   +
Sbjct: 460 PGGVGGIYRQFSIAMIASMGVSSFVALSLTPALCASL 496



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 87/238 (36%), Gaps = 12/238 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V              +        +       G+++  +  +     +++  +P 
Sbjct: 260 VRLADVARVEIGRDDYSYWSRLNGKPAAAVGVQLGPRGNALDTSNAIRERIGELSRRLPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G    R  I + ++ +  + + + + +W+  +   + L     + + +   
Sbjct: 320 GAQIRVPFDGAHFVRIAIDEVVLTLAEAVVLVFLVMWVFLRGLRYTLVPTVVIPVTLMGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKS 764
                +FG+  N+  +  ++  IG  V+D +VV +   R+ +        +S R+   ++
Sbjct: 380 FVAMWIFGLSINVFTMFGLVLAIGILVDDAIVVVESVHRIME-----DEGLSPREATRRA 434

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    G  V  +       +PMA + G V      F+I M   + V++  ++ +   +
Sbjct: 435 MKRIGGAIVGVTAVLTAVFVPMAFFPGGVGGIYRQFSIAMIASMGVSSFVALSLTPAL 492



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 78/238 (32%), Gaps = 13/238 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               + V LS + S   SL    +S  N     +   R         A   +  +     +
Sbjct: 801  TTGQMVPLSAIASRRWSLGPVSLSRFNGYPSLDVSGRSAPGVSSGAAMAEMERLAAALPS 860

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I         E         L+      + +S +A+ + +   ++ W      +T L L
Sbjct: 861  GIGYDWVDAAREERIAARQTPLL------IGLSVLAVFMVLAALYESWTVPFAVLTILPL 914

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                 L      G+  ++     ++T+IG +  + +++    R     Y    S R+ + 
Sbjct: 915  GAAGALAAALARGLPNDVYFKVGLITVIGLAAKNAILIVQFARD---AYRRGASLREAVL 971

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             +        V TSMA  + V+P+ +    G     S       G++ A    +  A 
Sbjct: 972  DAAALRFRPIVMTSMAFLLGVVPLVIATGAGAESRRSIGTGAFGGVLAATLFGLVFAP 1029


>gi|319952121|ref|YP_004163388.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Cellulophaga algicola DSM 14237]
 gi|319420781|gb|ADV47890.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cellulophaga algicola DSM 14237]
          Length = 1081

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 71/545 (13%), Positives = 163/545 (29%), Gaps = 40/545 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  +I   GLL        Q  + +FP   P             + + + +
Sbjct: 6   LKRPVLAIVISVIIVFTGLLAI-----KQLPISQFPQIAP-------------TTVNIFI 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKV 115
                     +      L + +    G+   +       +  + + F            V
Sbjct: 48  AYPGASADVLVNSTLIPLETAINGVQGMRYIASDATSAGEGTLRIIFEPGTDPNQAVVMV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +  V   L    ++  +V T  +   ++       Q     +        + I +I 
Sbjct: 108 KTRVDQVMPLLPELVQREGVVITPVQPSMLMYVNLFSTQEDDDELFLYNYAYTKIIPEIQ 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +              +     P R+R    +  ++       +   +    G    + 
Sbjct: 168 RIDGIASAQILGSRKYAMRVWLKPDRMRAYNVSAEEVMEAMQDQSIIARPGRLGGSSGKT 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S   +Y++  +                 +  +    I                ++     
Sbjct: 228 SQALEYVLTYEER-------------YSEPEQYEDIIIRATEEGELLKLKDVADVELGSE 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  L        I       +G   I+        L+A   P     +        
Sbjct: 275 FFDIYSNLDGHPSASIILKQTLGSNGKDVIDEVKNKLVELKAELPPGVDYKISYDVSNFL 334

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV IV+F+ +   +  L+   ++ +++I    ++ L G ++ L 
Sbjct: 335 DASIEQVIHTLRDAFILVAIVVFLFLGDWRSTLIPIIAVPVSLIGAFFVMQLFGLSINLI 394

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENR----KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           ++  +VL IG+ VD+ I+V E +  +         +   ++      A   I    ++  
Sbjct: 395 TLFALVLAIGIVVDNAIVVVEAVHVKMEEENLTPYNASYAVLGEIGGAIIAITLVMVSVF 454

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           I    +    G   R F+ITM  SI+IS   A+++   +   +++    K    +P+ +F
Sbjct: 455 IPISFMSGPVGVFYRQFSITMAGSIIISAIVALTLTPVLCAVLLKNNHGKPKSKSPIDKF 514

Query: 532 FLIPD 536
               +
Sbjct: 515 IAWFN 519



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/272 (14%), Positives = 103/272 (37%), Gaps = 10/272 (3%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                 + +    + + A    +L  ++   +     +      + + +    +  +   
Sbjct: 237 YEERYSEPEQYEDIIIRATEEGELLKLKDVADVELGSEFFDIYSNLDGHPSASIILKQTL 296

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYI 684
                 V++ VK K+ E+           +   +S  L   I + I  +  + I + I +
Sbjct: 297 GSNGKDVIDEVKNKLVELKAELPPGVDYKISYDVSNFLDASIEQVIHTLRDAFILVAIVV 356

Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           ++    W   L  I  + + +        LFG+  NL  + A++  IG  V++ +VV + 
Sbjct: 357 FLFLGDWRSTLIPIIAVPVSLIGAFFVMQLFGLSINLITLFALVLAIGIVVDNAIVVVEA 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           +   +K+   +++  +     + E  G  +  ++      +P++   G V      F+I 
Sbjct: 417 VH--VKMEEENLTPYNASYAVLGEIGGAIIAITLVMVSVFIPISFMSGPVGVFYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPI-LLFIYDWRAKNA 831
           MA  I+++A  ++ +   +  + + +   K  
Sbjct: 475 MAGSIIISAIVALTLTPVLCAVLLKNNHGKPK 506



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/157 (11%), Positives = 54/157 (34%), Gaps = 9/157 (5%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I + + + +Y  +      +      I +L + I  +     + G+  ++ A   V+ L+
Sbjct: 875  IFAIVLIFVYFVLAAQYESFLLPFAVILSLPVGIFGSFALLKVMGLANDVYAQIGVIMLV 934

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-W 789
            G    + V++ +     ++      +  +   +         + TS A    ++P+ +  
Sbjct: 935  GLLGKNAVLIIEFA---VQKRRQGATVLEAAIEGSRSRFRPILMTSFAFIAGLIPLVIAS 991

Query: 790  GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            G   I   +       G+++     + +   +     
Sbjct: 992  GAGAIGNRTIGGSAMGGMLIGTIFGVILIPGLYYIFG 1028


>gi|239939961|ref|ZP_04691898.1| preprotein translocase subunit SecD [Streptomyces roseosporus NRRL
           15998]
 gi|239986445|ref|ZP_04707109.1| preprotein translocase subunit SecD [Streptomyces roseosporus NRRL
           11379]
          Length = 596

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 111/582 (19%), Positives = 215/582 (36%), Gaps = 58/582 (9%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD---- 61
             +IL  M+   G +    +  P+                LG+DL GG+ + LE      
Sbjct: 21  LALILIVMVALAGGMFLSGHTTPR----------------LGIDLAGGTSITLEAQNQPG 64

Query: 62  -EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
             +      +      +   +   G+    ++   N  I ++       +   ++V    
Sbjct: 65  KPNAINPTNMDTAVGIIERRVNGLGVSEAEVQTQGNKNIIVNIPKGTNSKQAQEQVGTTA 124

Query: 120 QGVNSKL--------------------------NVDPKKNLLVTTTEKEISIVLSQNNID 153
           Q     +                            +  +       E +     +  +  
Sbjct: 125 QLYFRPVLTVQASGPEEPKPSDSASPSASGTPKPGESAQGEDKAKDEDKPQGEEATGSEA 184

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
              + A  Q   +            ++ +   S         +   ++L++         
Sbjct: 185 TPSASATTQGRAVTGALKKDDPTPGASDKPKASESPEASPSADPATAKLQEEFAKLDCTD 244

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQY--LVEDKVEISGIHLNGATANFDPKTHKPVVD 271
             +             +     +    Y   +    E+SG  ++ A    D +T + +V 
Sbjct: 245 PKQRTDAGKNAKATDSIVACGSNVPGSYEKYILGPAEVSGSDVDDAKGAIDQQTGEWIVS 304

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP----SGKAQISGNFTIET 327
           + F   GA++F  +T     +   +     VL   V++        S  AQISG+FT ++
Sbjct: 305 MEFTSAGAKKFQTITGRLSQQQPPMNQFAIVLDGEVVSAPSVRQALSKNAQISGSFTQQS 364

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  L  +L  G+LP+    V    V A LGS+ +  G  A   GL L++++++V Y    
Sbjct: 365 AEDLGNILSYGALPLTFKEVSVTTVTAALGSEQLQAGLIAGAIGLALVIIYLVVYYRGLA 424

Query: 388 LVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +A  S+ ++ ILT  ++SLLG      L LP++ G ++ IG+  DS I+  ER+R+E R
Sbjct: 425 FIALLSLLVSGILTYTIMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIR 484

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
           + +++  +++  + RA  TI  S+  + +A  VLF    G V+GFA T+GL+ L+ +   
Sbjct: 485 EGRTLRPAIERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDVVVV 544

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
               + +M  + R K               +     ++  R 
Sbjct: 545 FLFTKPLMTLMGRTKFFSKGGPWSGLDPKRLGAQPPLRRSRR 586



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 90/282 (31%), Gaps = 8/282 (2%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V  S +          T      ++F                       +   + D    
Sbjct: 282 VSGSDVDDAKGAIDQQTGEWIVSMEFTSAGAKKFQTITGRLSQQQPPMNQFAIVLDGEVV 341

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
           +    +  L +     G    Q+            +       +   V   +  E ++ G
Sbjct: 342 SAPSVRQALSKNAQISGSFTQQSAEDLGNILSYGALPLTFKEVSVTTVTAALGSEQLQAG 401

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAA 725
           ++   I    ++IY+ + ++   A  A+ +L++    T    +L G       NL AV  
Sbjct: 402 LIAGAIGLALVIIYLVVYYR-GLAFIALLSLLVSGILTYTIMSLLGPAIGFALNLPAVCG 460

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +  IG + +  +V ++R+R  ++      + R  I+++        + +   +F++   
Sbjct: 461 AIVAIGITADSFIVYFERVRDEIRE---GRTLRPAIERAWPRARRTILVSDFVSFLAAAV 517

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + +     +  FA  +    ++          P++  +   +
Sbjct: 518 LFIVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPLMTLMGRTK 559


>gi|119476138|ref|ZP_01616490.1| RND family efflux transporter [marine gamma proteobacterium
           HTCC2143]
 gi|119450765|gb|EAW31999.1| RND family efflux transporter [marine gamma proteobacterium
           HTCC2143]
          Length = 1035

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 74/683 (10%), Positives = 189/683 (27%), Gaps = 43/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   G +        Q     +P   P                     
Sbjct: 9   KRPVFATVIALLLAAFGAMA-----FNQLSTREYPDVSPPLI---------SISTEYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  S +        S +  ++ I + F  +R  +  A+ +   +  
Sbjct: 55  AADVIETRITQIIEDEISGIDGVKSVRSSSQDGRSNINIEFDLNRDIDAAANDIRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  D ++  +  +      I+        +    +E +    R  +D+  +     
Sbjct: 115 VINRLPEDAEQPRVQKSDSDAYPIIYISLEAASIP--VMELTDYTERYIVDRFAVLPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D   L     T + +       N                     
Sbjct: 173 SVNVYSSGTKSMRVWIDRKNLAARQLTVSDVVDALRQENIELPA---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++E + +                   +     G +         +    +      
Sbjct: 217 ---GRIESTAMEFPIRLQRSYRSEKDFRELVLKVGDGGQLVRLGDVAKVEVGSSSSRFLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +             +++ +    +         +                      + + 
Sbjct: 274 ITNGSDSMAMGIVKQSKANTVDVLAAINKEVEAIARDLPEGMAISTSGDASAFIRAALNG 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +  GLV +V+ + +      L+    I L+++  +  L   G ++ L ++  +V
Sbjct: 334 VYWAIFLTTGLVALVILLFLGNLSATLIPVVCIPLSLMGAMIALEAFGFSINLITLLAMV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I+V E I     K ++   +   G S+    +  + +  +     + F  
Sbjct: 394 LAIGLVVDDAIVVLENIYRRIEKGEAPLLAAYKGASQVGFAVIATTVVLVAVFTPIVFMQ 453

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G      A+ +  ++++S   A+SIV  M   +++    +S     +       +  
Sbjct: 454 DNMGRIFSELAVAICAAVIVSSIMALSIVPMMCGNLLKANHRQSAIEKFMLPIMSALETG 513

Query: 539 AIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            I+ +R          +G  I                  I+ +  I +  +A     +  
Sbjct: 514 YIRSLRFTLTQPWVPVIGTIIALGTGYYLAANLKTEYAPIEDQDTIFVSAIAQEGTGVET 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R  +E LQ   +  +   G    L     + G +         +         +   ++
Sbjct: 574 MRGIIEQLQAPVLKAKEQGGIGRVLFLSPGRGGSAPTNAFSRISLVPWNERDFSVFDFRD 633

Query: 654 TEIVGPKISRELIRKGIVGVIIS 676
             +   +    +     +   IS
Sbjct: 634 RMVSEWEKIPGIRVMAFLPSGIS 656



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 77/235 (32%), Gaps = 7/235 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V L  V             F     +   +  ++    ++V     +    + I   +
Sbjct: 252 QLVRLGDVAKVEVGSSSSRFLFITNGSDSMAMGIVKQSKANTVDVLAAINKEVEAIARDL 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +T        R  +      + ++   + + I +        L  +  + L + 
Sbjct: 312 PEGMAISTSGDASAFIRAALNGVYWAIFLTTGLVALVILLFLGNLSATLIPVVCIPLSLM 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     FG   NL  + A++  IG  V+D +VV + +    +      +      K  
Sbjct: 372 GAMIALEAFGFSINLITLLAMVLAIGLVVDDAIVVLENI---YRRIEKGEAPLLAAYKGA 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAA 817
           ++     + T++       P+     ++   F   A+ +   ++V++  ++ I  
Sbjct: 429 SQVGFAVIATTVVLVAVFTPIVFMQDNMGRIFSELAVAICAAVIVSSIMALSIVP 483



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 65/165 (39%), Gaps = 9/165 (5%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
              + + + + +  +F+  F    +  + + +    G   L   G   N+ +   +L LIG
Sbjct: 860  GFALVVLFLVMAAQFE-SFVHPTVIMITVPLALVGGMLGLMLSGQSLNIFSQIGLLMLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++ + +    ++  T + F + I K     L   + T+++  +  +P+ +   
Sbjct: 919  IATKNGILIVEFIN---QVRDTGVEFTEAIIKGCQLRLRPVLMTTISTLVGAMPLVLMSG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G        + +  G+ +A   ++F+   +   I        R+
Sbjct: 976  PGSVSRNVLGVVILSGVSLATLLTLFMVPGLYKLIAGNTGSPERL 1020


>gi|90411795|ref|ZP_01219804.1| RND family, acridine/multidrug efflux pump [Photobacterium
           profundum 3TCK]
 gi|90327357|gb|EAS43721.1| RND family, acridine/multidrug efflux pump [Photobacterium
           profundum 3TCK]
          Length = 1045

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 75/682 (10%), Positives = 181/682 (26%), Gaps = 40/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  M+   G++  +        + ++P+  P +              +     
Sbjct: 8   RPVFAWVLAIMVMLAGIIALI-----TLPIAQYPTIAPPSIQ---------ISAIYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
                  +    ++  + L        +     N  ITL+FA     +    +V   L  
Sbjct: 54  AKTAEDSVTQVIEQQMNGLDNLLYMSSTSDSFGNVTITLTFASGTDPDIAQVQVQNKLSA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L +D +   +         +++     +       + S  I    +D I       
Sbjct: 114 ATPLLPLDVQNQGVQVEKASNSILMVIGFVSEDGSMTNEDLSDYISSNLLDTISRVNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    +P +L       + +       N        G            
Sbjct: 174 QTQLFGA-EYAMRIWLNPHKLESYNLMPSDVVAAIQEQNAQVSAGQLGAVPAVKGQEISA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +        +       N+    A      
Sbjct: 233 TITAQSRL-------------QTVDQFKKILLKVNTDGSQVLLKDVSNVELGSASYQTAS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +    +     +   T +        L+    P    +           S   
Sbjct: 280 NYNQQPASGISIALATGKNALETADGIRAKLDELKPFFPPGIKIVYPYDTTPFIKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+ + +   +  L+   ++ + V+ T A+LS+ G ++   ++  +V
Sbjct: 340 VVKTLLEAIFLVFLVMLLFLQSLRATLIPTIAVPVVVLGTFAMLSVFGYSINTLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      + +   +   S +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERLMEEEGLEPREATEKSMTEITSALVGIGMVLCAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530
            G      R F+IT+  ++ +S+  AI +   + I +                + N    
Sbjct: 460 SGSTGAIYRQFSITIVTAVALSVMVAIILTPTLCISLLKTTDGHKETGFPGWFNRNFSKA 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                + +     R+  + +    + +I ++  L         + +G +   V       
Sbjct: 520 TEKYKNAVTFITHRSTRFMLIYLGIAAIMALLFLRLPTGFLPDEDQGIMMSMVQLPSGST 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  L  ++   +  +  +    F V      G       +   +            
Sbjct: 580 QEQTLDVLNKVENHFLVDEKDNVRSVFSVAGFSFAGSGSNTGMMFVSLNDWDERTEKEDK 639

Query: 651 IQNTEIVGPKISRELIRKGIVG 672
           +            E+    +  
Sbjct: 640 VNAIVQRSMMAFTEIPEAQVFA 661



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + +  T    ++FG   N   + A++  IG  V+D +VV + +    
Sbjct: 361 SLRATLIPTIAVPVVVLGTFAMLSVFGYSINTLTMFALVLAIGLLVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +  R+  +KS+ E     V   M      +PMA + GS       F+I +   +
Sbjct: 419 LMEEEGLEPREATEKSMTEITSALVGIGMVLCAVFIPMAFFSGSTGAIYRQFSITIVTAV 478

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++   +I +   + + +  
Sbjct: 479 ALSVMVAIILTPTLCISLLK 498



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 66/184 (35%), Gaps = 10/184 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            + + +    +  L +  + E  G      +   G   ++ +   +++++    +   W  
Sbjct: 834  DAMAQMEKIVSELPSGVSLEWTGMSYQERI-SGGQAPLLYALSILIVFLCLAALYESWAV 892

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I  + L I   +    L G+  ++     +LT IG    + +++ +  +     + 
Sbjct: 893  PFSVILIIPLGILGAVSATGLLGLNNDVYFQVGLLTTIGLGSKNAIMIVEFAK---SYHE 949

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
            +          +    L   + TS+A  + VLP+A+    G     +    +  G++ A 
Sbjct: 950  SGEELFKATIHAAKIRLRPILMTSLAFGMGVLPLAISNGAGSGAQNAVGTGVLGGVLAAT 1009

Query: 810  SSSI 813
               I
Sbjct: 1010 FLGI 1013


>gi|78777772|ref|YP_394087.1| preprotein translocase subunit SecD [Sulfurimonas denitrificans DSM
           1251]
 gi|78498312|gb|ABB44852.1| SecD export membrane protein [Sulfurimonas denitrificans DSM 1251]
          Length = 521

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 176/544 (32%), Positives = 296/544 (54%), Gaps = 37/544 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ N + +++++     GL  +LP+ L               +I+LGLDL+GG H++L V
Sbjct: 1   MKLN-YRIVIFAFAIVFGLFFSLPSILQTQDG---------KKITLGLDLQGGLHMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             ++ V   ++  +  ++ + +KE I + S+   ++ I+    D    + I   +     
Sbjct: 51  KTEEAVKSRIKSIAASVKYYSEKEEILIDSLSFDESSISFLLLDKDDLKKIKSFLHEI-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      K  +V  T + IS+ L+   I +    AI Q++E IR R+DQ G++E  
Sbjct: 109 -----------KGAVVVATGESISLTLTPEEIARTEEQAISQAIETIRNRLDQFGLTEPI 157

Query: 181 IQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + R G  +IL+QL G +   D  R R+L+  +AK+    V           ++     +G
Sbjct: 158 VARQGEEKILVQLAGIKTAEDEQRARELISRSAKLELMAVDEDRNARVNSMSNSDAVSYG 217

Query: 230 VRFLRDSDG--NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              L D      +YLV +   + G  L  A   FD    +P++    +  GA+ F + T 
Sbjct: 218 DVILEDVTNPHMKYLVREIPILDGGMLTDANVGFDQNN-RPLITFKLNAEGAQIFGDFTA 276

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            ++GK LAVVLDG+V +APVIN+ I  G  QISGN+T+  A  L+  LR+GSL   + ++
Sbjct: 277 KSVGKRLAVVLDGKVYSAPVINERIGGGSGQISGNYTVMEAKDLSIALRSGSLLAPIYLM 336

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E+R+VG  LG+DSI     A++ G  L++ FM+V Y   G++++ ++ +N+++ L+++SL
Sbjct: 337 EKRSVGPSLGADSIKASMIALIGGFALVIGFMVVYYRMAGIISNIALIVNILIILSVMSL 396

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            GATLTLP +AGIVL +G+AVD+N+++NERIRE   +  S+  +++ G++ A   I D+N
Sbjct: 397 FGATLTLPGMAGIVLTVGMAVDANVIINERIRELLHQGYSIQKAIEEGYANAMRAILDAN 456

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           IT LIA VVL+ +G GA++GFA+T+ + IL SM TAI     +   +    +    ++  
Sbjct: 457 ITTLIAAVVLYAYGTGAIKGFAVTISIGILASMLTAILGTHGIYEMLQNRIQKSKNNLFW 516

Query: 528 LSRF 531
               
Sbjct: 517 FGIK 520



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 83/182 (45%), Gaps = 4/182 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            +     VGP +  + I+  ++ +I     ++ ++ + ++    + +   LI++I   L 
Sbjct: 334 YLMEKRSVGPSLGADSIKASMIALIGGFALVIGFMVVYYRM-AGIISNIALIVNILIILS 392

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             +LFG    L  +A ++  +G +V+  V++ +R+R+ +       S +  I++     +
Sbjct: 393 VMSLFGATLTLPGMAGIVLTVGMAVDANVIINERIRELLHQ---GYSIQKAIEEGYANAM 449

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  ++   I+ + +  +G   I  FA+ ++ GI+ +  ++I     I   + +   K
Sbjct: 450 RAILDANITTLIAAVVLYAYGTGAIKGFAVTISIGILASMLTAILGTHGIYEMLQNRIQK 509

Query: 830 NA 831
           + 
Sbjct: 510 SK 511


>gi|325927353|ref|ZP_08188606.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
 gi|325928587|ref|ZP_08189772.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
 gi|325541020|gb|EGD12577.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
 gi|325542276|gb|EGD13765.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
          Length = 1049

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 72/681 (10%), Positives = 179/681 (26%), Gaps = 36/681 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        L+++P+  P   I+                 
Sbjct: 8   RPIFAWVIAIVITLAGALSIL-----SLPLEQYPNIAPPT-IN--------VSATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L     +   S       ITL+F      +    +V   +  
Sbjct: 54  AQTVQNSVTQILEQQMTGLDHLLYMSSSSSSAGTASITLTFDSGTDPDTAQVQVQNKVSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEK-EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + L    + N +  T        ++     +     + +    ++    D I      
Sbjct: 114 GEAMLPEAVQSNGVTVTKSTGSSMFMVLAFTSEDGSMDSTDIGDYMVSTLQDPISRLNGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP +LR      A +S      N        G           
Sbjct: 174 GGVNVFGS-EYSMRVWLDPDKLRTYALMPADVSNAISAQNADVSSGALGALPAVQGQQLN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  + ++                 +    +   + G    +      +          
Sbjct: 233 ATVTSRSKL-------------KTPAQFEAIVLKSQPGGATVYLRDVARVELGSKSYASS 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   +          +     +        L+          +          S  
Sbjct: 280 SKYNGKSASGMGLELATGANALDAAKAVEDKLEQLKPYFPTGLKYEIAYDTTPFVRISIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+++ +   +  LV   ++ + ++ T  +L+LLG ++   ++  +
Sbjct: 340 EVVKTLLEAIALVVLVMYLFLQNWRATLVPVIAVPVVLLGTFGVLALLGYSINTLTMFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    + +  S   +      +    +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERLMSEQGMSPRQATHTSMGQISGALVGIALVLTAVFLPMAF 459

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FG   G   R F++T+  ++L+S+  A+++  A+   +      +   ++          
Sbjct: 460 FGGATGEIYRQFSVTIAAAMLLSLLVALTLSPALCASL-LKPIARGGHVSRQGVLGRFFG 518

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               +F R+                     +     +      +L        D  ++  
Sbjct: 519 WFNARFDRSAEGYGRGVGTLIGHRKLGGLVYLALLVVMALLFWRLPSSFLPDEDQGMLMV 578

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              +             ++     L+      +                           
Sbjct: 579 MFTTPAGATQQRTQQSIDQATDFILKQPEVAGMMTISGFSFAGSS-QNSGMGFIKLKDWA 637

Query: 657 VGPKISRELIRKGIVGVIISA 677
                ++E+  +    ++ + 
Sbjct: 638 QRDAPAQEIANRITGAMMGAL 658



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/405 (10%), Positives = 117/405 (28%), Gaps = 10/405 (2%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L  + ++ +    A I L      D +    +   + ++    +  ++         +  
Sbjct: 75  LLYMSSSSSSAGTASITLTFDSGTDPDTAQVQVQNKVSQGEAMLPEAVQSNGVTVTKSTG 134

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            S    L  T          +  + ++     +      +  V            +    
Sbjct: 135 SSMFMVLAFTSEDGSMDSTDIGDYMVSTLQDPISR-LNGVGGVNVFGSEYSMRVWLDPDK 193

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +   +                   G   ++               +          + + 
Sbjct: 194 LRTYALMPADVSNAISAQNADVSSGALGALPAVQGQQLNATVTSRSKLKTPAQFEAIVLK 253

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +        +R              +          +  +           + V+ K+ +
Sbjct: 254 SQPGGATVYLRDVARVELGSKSYASSSKYNGKSASGMGLELATGANALDAAKAVEDKLEQ 313

Query: 645 IVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           + P         +    +  +   I + +  ++ +   +++ +++  + W   L  +  +
Sbjct: 314 LKPYFPTGLKYEIAYDTTPFVRISIEEVVKTLLEAIALVVLVMYLFLQNWRATLVPVIAV 373

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G  AL G   N   + A++  IG  V+D +VV + +     +    +S R  
Sbjct: 374 PVVLLGTFGVLALLGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERLMSEQGMSPRQA 431

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              S+ +  G  V  ++      LPMA +G   G +   F++ +A
Sbjct: 432 THTSMGQISGALVGIALVLTAVFLPMAFFGGATGEIYRQFSVTIA 476



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 80/261 (30%), Gaps = 17/261 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                   G   +   ++  V  S   S+  +     +S  N                   
Sbjct: 779  RMLPADIGRWYVRNSSSEMVPFSAFSSSAWAYAPQVLSRFNGVESMEITGSAASGISSGE 838

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WI 686
            A   +  +V K   ++    +  + +                 ++ +   + +++    +
Sbjct: 839  AMNGIAGLVGKIGKDVGYAWSGMSYQEQAAG--------AQTWMLYAVSLVFVFLCLAAL 890

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               W   +  +  + + I   L    L G+  ++     +L  +G +  + +++ +  ++
Sbjct: 891  YESWSIPISVMLAVPVGIVGALLATWLRGLSNDIYFQVGLLATMGLAAKNGILIVEFAKE 950

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
               L        +    +    L   V TS+A  + VLPM V    G     S    +  
Sbjct: 951  ---LEEKGQPLIEATLHAARMRLRPIVMTSLAFLLGVLPMVVSSGAGSGGRHSLGTGVLG 1007

Query: 804  GIVVAASSSIFIAAPILLFIY 824
            G +V+    IF      + + 
Sbjct: 1008 GTLVSTLLGIFFVPLFYVMVR 1028


>gi|163749464|ref|ZP_02156712.1| putative multidrug efflux membrane fusion protein [Shewanella
           benthica KT99]
 gi|161330873|gb|EDQ01800.1| putative multidrug efflux membrane fusion protein [Shewanella
           benthica KT99]
          Length = 1051

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 153/544 (28%), Gaps = 32/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ +++  IGL+       P   +  FP   P  +I+                 
Sbjct: 19  RPKFAFVISTVLTLIGLISI-----PILSVSEFPEIAPP-QIN--------VSTSYSGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +   + ++             +  ++++F      +    KV   +Q 
Sbjct: 65  ANIVRDTIAQPLEAEVNGVEDMLYMESKSANDGSYSLSVTFKVGTDADMAQVKVQNRVQQ 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +    +    +++           ++  +        D +       
Sbjct: 125 AMPRLPAEVQRQGVKVEKQSPSILMVVNLISPNETFDSLFITNYAGLNITDFLARQNGVS 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    +P ++  L  T + +       N        G   +      QY
Sbjct: 185 KVQVIGALDYAIRIWLNPDKMASLGVTASDVIASLQEQNIQVAAGRIGAAPVDPQQQFQY 244

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  +                 +    +        +        +           
Sbjct: 245 TLQTKGRL-------------KDPQEFREVMIRANNDGSKVIVGDVARVELGSQTYDAQG 291

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +              L           V          S   
Sbjct: 292 RLNNKPSAIIAVYQSPDANALEVGAAIKAEMDRLSKQFPRDLEYEVLYDTTAFVETSIKE 351

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+F+ +   +  LV   +I +++I T A L + G ++   S+  ++
Sbjct: 352 VVQTLFISIALVVLVVFIFLQDIRSTLVPAIAIPVSLIGTFAFLLVFGMSINTVSLFALI 411

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +           I  + +  L         
Sbjct: 412 LAIGIVVDDAIVVVENVTRLMEDEGLSPKEATSKAMKEVTGPIIATTLVLLAVFAPTAVM 471

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     F++T+ +S+LIS   A+++  A+   ++R  K  +   +           
Sbjct: 472 PGITGQMYAQFSVTICISVLISSVNALTLSPALCASLLRRPKKHTKGFHATFNKHFERVT 531

Query: 538 IAIQ 541
               
Sbjct: 532 GKYM 535



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 87/207 (42%), Gaps = 8/207 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    ++ + K+    +    + +T        +E+++   + + +  + + I++    
Sbjct: 316 AAIKAEMDRLSKQFPRDLEYEVLYDTTAFVETSIKEVVQTLFISIALVVLVVFIFLQ--- 372

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + +  T  F  +FG+  N  ++ A++  IG  V+D +VV + +    
Sbjct: 373 DIRSTLVPAIAIPVSLIGTFAFLLVFGMSINTVSLFALILAIGIVVDDAIVVVENV--TR 430

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S ++   K++ E  G  + T++       P AV     G +   F++ +   +
Sbjct: 431 LMEDEGLSPKEATSKAMKEVTGPIIATTLVLLAVFAPTAVMPGITGQMYAQFSVTICISV 490

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++++ +++ ++  +   +     K+ +
Sbjct: 491 LISSVNALTLSPALCASLLRRPKKHTK 517



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 66/202 (32%), Gaps = 9/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +               T     +  +E+    +  +I     +  Y+++      W  
Sbjct: 845  DAITAMERAANQTLPTGYTYEWTGQTYQEIKAGNLAPLIFGLALVFTYLFLVAQYESWTI 904

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I  + + I        L G + NL A   ++ LIG +  + +++ +  +   +L  
Sbjct: 905  PFAVILAVPIAILGAFINIWLMGSDLNLYAQIGLVLLIGLACKNAILIVEFAK---QLRE 961

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S  +  + +        + T+ +  + VLP+ +    G     +    +  G++ A 
Sbjct: 962  EGKSILEAGEMAAKLRFRAVLMTAFSFLLGVLPLIIATGAGAGSRRALGYSVFGGMLAAT 1021

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
                 +     + +   R K  
Sbjct: 1022 IVGTLLVPVFYVMMQTMREKFK 1043


>gi|9963888|gb|AAG09746.1|AF232237_4 multidrug efflux transporter RND family protein [Agrobacterium
           tumefaciens]
          Length = 1029

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 83/685 (12%), Positives = 186/685 (27%), Gaps = 40/685 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G+L           + ++P   P                     
Sbjct: 7   RRPVFAWVIAIVIMLGGVLAIW-----TLSISQYPDIAPTTVR---------VSATYNGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + L        S      ++TL+F +S   +    +V   LQ 
Sbjct: 53  SAETVEKSVTTIIEDGMTGLDDLTYMTSSSSTGSAEVTLTFGNSILPDIAQVQVQNKLQL 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    ++  L  +      +++          ++ +       +  DQI   E   
Sbjct: 113 VQSQLPDTVQQQGLQVSRSTSSILMVGALISTDGKRNSADLGDVFSSRVEDQIKRLEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +   TTA ++      N        G            
Sbjct: 173 SINVFGS-EYAMRIWLDPFKLNKYQLTTADVTGAIQSQNTQVSVGSLGAVPAVKGQQLNV 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + +++                     I   E             I           
Sbjct: 232 TVTAQSQLT-------------TVADFEKVILKVEKDGATVRLSDVARIEIGQETYGGDS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T          +                      S   
Sbjct: 279 RSNGRPSAGFAVNLATGANALDTAARVKAALTNVEGSLPEGVSIEYPYDTTPFVKLSIEK 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +VL + +   +   +   ++ + ++ T  +L+L G ++   ++  +V
Sbjct: 339 VVHTLIEAIILVFVVLLVFLQNLRATFIPMIAVPVVLLGTFGVLALTGYSINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   + +         I    +      + + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERIMSEEGLSPVEATEKSMGEITGAIIGIALVLTAVFIPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++L+S   AI +  A+   +++          P + F      
Sbjct: 459 GGSTGIIYRQFSITIVSAMLLSAVVAIVLTPALCATMLKPIDHHKKKRGPGAWFNRGFGK 518

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNY--------GIDFKGGIQLGVLANRPV 589
               ++ +  + +   +   I    ++      +          + +G +   +      
Sbjct: 519 TTDGYVSSIGYLLKRPLRVMIIFAVVIGGCVWFFSKLPSSFLPQEDQGVLLTIIQTPTGS 578

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++      ++ ++      +  + E  F V      G       V   +K       P  
Sbjct: 579 NIERTNEVVKQVENYFREKEAANVESVFGVLGFSFSGSGQNNAIVFTKLKDFAERTAPDQ 638

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
                               +  ++
Sbjct: 639 HAGAIVQRAMGTFFGFRDAQVFPLL 663



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 47/431 (10%), Positives = 124/431 (28%), Gaps = 21/431 (4%)

Query: 415  PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
                 +      +  +N +V  ++++   +      +      RA  T F      +   
Sbjct: 604  SVFGVLGFSFSGSGQNNAIVFTKLKDFAERTAPDQHA-GAIVQRAMGTFFGFRDAQVFPL 662

Query: 475  VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            +     G G   GF+    +    +   A++     +I +       S   +        
Sbjct: 663  LPPAIQGMGTSSGFS-MYLVDSGRNGTDALTASSKELIALATGNPKISSLRSDSQDNETQ 721

Query: 535  PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +  Q           S+   + +I                 + +   A   +    +
Sbjct: 722  MKIVLDQEKMGAMGVDLSSVNLMLSTIFAGRDVNDFTLNGELKPVYVQGDAPYRMQPDDL 781

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +        G++   +   E  ++         +      LE                  
Sbjct: 782  KYWYARNTTGEMVPFSSFSEVKWVNAPPSLARFNGTGAISLEGTAGTGVASGEAMNEMER 841

Query: 655  EIVGPKISRELIRKGIVG----------VIISAIAMLIYI---WIRFKWYFALGAITTLI 701
                      +  +GI            ++ +   +++++    +   W      I  + 
Sbjct: 842  LTASLPGGYTVAWQGISYQERLSGSQAQMLYALSVLIVFLCLAALYESWSIPFSVILAVP 901

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + +   L     FG   ++     +LT IG +  + +++ +  ++        +S  +  
Sbjct: 902  VGVLGALTAAHFFGQTNDVYFKVGLLTTIGLAAKNAILIVEFAKE---RQEHGLSLVEAA 958

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + TS+A  + V+P+A+    G +   +  I +  G++ A    IF    
Sbjct: 959  LEAAKLRLRPIIMTSLAFILGVVPLAIATGAGSAAQNAIGIGVLGGMLSATLLGIFFVPS 1018

Query: 819  ILLFIYDWRAK 829
              + I     +
Sbjct: 1019 FFVIIRRLSRR 1029



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
                  +  + + +  T G  AL G   N   + A++  IG  V+D +VV + +     
Sbjct: 361 LRATFIPMIAVPVVLLGTFGVLALTGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERI 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S  +  +KS+ E  G  +  ++      +PMA +GGS       F+I +   ++
Sbjct: 419 MSEEGLSPVEATEKSMGEITGAIIGIALVLTAVFIPMAFFGGSTGIIYRQFSITIVSAML 478

Query: 807 VAASSSIFIAAPI 819
           ++A  +I +   +
Sbjct: 479 LSAVVAIVLTPAL 491



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 61/535 (11%), Positives = 140/535 (26%), Gaps = 59/535 (11%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            ++    ++I+++++    +      F  +      P                G  L +  
Sbjct: 531  LKRPLRVMIIFAVVIGGCVW-----FFSKLPSSFLPQEDQ------------GVLLTIIQ 573

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-----------RQIQNKITLS----FADS 105
                           ++ ++ +++                      N I  +    FA+ 
Sbjct: 574  TPTGSNIERTNEVVKQVENYFREKEAANVESVFGVLGFSFSGSGQNNAIVFTKLKDFAER 633

Query: 106  RFKEN-IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
               +      V   +       +      L         S   S   +D   +     + 
Sbjct: 634  TAPDQHAGAIVQRAMGTFFGFRDAQVFPLLPPAIQGMGTSSGFSMYLVDSGRNGTDALTA 693

Query: 165  EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK 224
                      G  + +  R  S     Q+    D  ++  +    + ++         + 
Sbjct: 694  SSKELIALATGNPKISSLRSDSQDNETQMKIVLDQEKMGAMGVDLSSVNLMLSTIFAGRD 753

Query: 225  GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
                       +D         V + G        +     +                  
Sbjct: 754  V----------NDFTLNGELKPVYVQGDAPYRMQPDDLKYWYA-------RNTTGEMVPF 796

Query: 285  VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
             +   +    A     R      I+    +G    SG    E   + A++    ++  + 
Sbjct: 797  SSFSEVKWVNAPPSLARFNGTGAISLEGTAGTGVASGEAMNEMERLTASLPGGYTVAWQG 856

Query: 345  NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
               +ER  G+            A+   +V + L  +            ++ + V+  L  
Sbjct: 857  ISYQERLSGSQAQMLY------ALSVLIVFLCLAALYESWSIPFSVILAVPVGVLGALTA 910

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
                G T  +    G++  IGLA  + IL+ E  +E      S+  +           I 
Sbjct: 911  AHFFGQTNDVYFKVGLLTTIGLAAKNAILIVEFAKERQEHGLSLVEAALEAAKLRLRPII 970

Query: 465  DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
             +++  ++  V L      G  A     I +   +L +    I  V +  + I R
Sbjct: 971  MTSLAFILGVVPLAIATGAGSAAQNAIGIGVLGGMLSATLLGIFFVPSFFVIIRR 1025


>gi|298737168|ref|YP_003729698.1| preprotein translocase subunit SecF [Helicobacter pylori B8]
 gi|298356362|emb|CBI67234.1| preprotein translocase SecF subunit [Helicobacter pylori B8]
          Length = 323

 Score =  181 bits (457), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 91/294 (30%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  +     +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQARYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ +A+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALMAIMVYVSFRYEWRFALASVIALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|299145630|ref|ZP_07038698.1| multidrug efflux RND transporter MexF [Bacteroides sp. 3_1_23]
 gi|298516121|gb|EFI40002.1| multidrug efflux RND transporter MexF [Bacteroides sp. 3_1_23]
          Length = 1049

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 176/683 (25%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LNILPVAQFPGITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSIAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSQDSVYNSLYLTNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-S 236
                          +    DP  +R    +  ++       N        G    +D +
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPQQVYQSIQSQNVEVSAGYIGQPIGQDNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  +                 +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRL-------------NSPEQFGDIIIRREQDGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAESFPSGVAYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I T A+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T+++    G   + FA+T+  S ++S F ++++  A+    +   K  +  I       
Sbjct: 458 PTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSNFFIYKGFNKA 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R          L  I  +  +         +  G     V   
Sbjct: 518 YDKTQGVYDKIVKWLLQRPGMALASYGTLTVIALLLFMHWPSTFIPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  E +     S+                 G+         ++K       
Sbjct: 578 PAASLERTQAVGEKINGILDSYPEVKNYIGISGFSIMGGGEQSNSATYFVVLKNWSERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+  
Sbjct: 638 KEHTAAAIVNRFNGEAYMTIQAA 660



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/541 (8%), Positives = 136/541 (25%), Gaps = 43/541 (7%)

Query: 329  GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                +         K     +      +       G      G + ++  ++ ++     
Sbjct: 502  KSKPSNFFIYKGFNKAYDKTQGVYDKIVKWLLQRPGMALASYGTLTVIALLLFMHWPSTF 561

Query: 389  VADFSIFLNVILTL------------------ALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            + D      + +                     +L           I+G  +  G    +
Sbjct: 562  IPDEDDGYFIAVVQLPPAASLERTQAVGEKINGILDSYPEVKNYIGISGFSIMGGGEQSN 621

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +      ++  + +      +  +                + A V     G GA  G  +
Sbjct: 622  SATYFVVLKNWSERKGKEHTAAAIVNRFNGEAYMTIQAAEVFAMVPPAIPGLGASGGLQL 681

Query: 491  ---------TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
                        +   I+   A    +  +  +    +              +       
Sbjct: 682  QLEDRRNLGPTEMQQAINALLASYHSKPALASVSSQYQANVPQYFLNIDRDKVQFMGIAL 741

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR------ 595
                   G  +   +    +     + +      +    +  +    V  S         
Sbjct: 742  NDVFSTLGYYMGAAYVNDFVEFGRIYQVKIEARDQAQRVIDDVLKLSVPNSAGEMVPFSS 801

Query: 596  -SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             + +E     D   +        L         +    + +E + K+           + 
Sbjct: 802  FTKVEEQLGQDQINRYNMYSTASLTCNVAPGSSTGQAIQEVEALFKEQLGDEFGYEWTSV 861

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +         I+ +I++    L+       W   + A+  L + +   +    + 
Sbjct: 862  AYQETQAGNTTTIVLIMALIVAF---LVLAAQYESWTSPVAAVIGLPVALLGAMIGCLIM 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+  S  + +++ +  R          S R+   ++ +  L   + 
Sbjct: 919  GTPVSIYTQIGIILLVALSAKNGILIVEFARDFRAE---GNSIREAAFEAGHVRLRPILM 975

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS A  + V+P+      G     +    + FG+ +    +         F+   + + +
Sbjct: 976  TSFAFVLGVMPLLFATGAGAQSRIALGAAVVFGMAMNTLLATIYIPNFYEFMQKLQERFS 1035

Query: 832  R 832
            +
Sbjct: 1036 K 1036



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 77/245 (31%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S  N        +  Q           V   +++           
Sbjct: 267 DIARIDLGSASYSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAESFPSGVAY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  T    
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSN 507


>gi|170696242|ref|ZP_02887375.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
 gi|170138886|gb|EDT07081.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia graminis C4D1M]
          Length = 1061

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 66/548 (12%), Positives = 156/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G++        +  +  +P  +P + +          H       
Sbjct: 10  RPIFAGVLSVLVLLAGVISLF-----KLPISEYPEVVPPSVV---------VHAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAEAVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTNPDLATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGVTTIKSSPTLTMVVHLISPNDRYDMTYLRNYAVLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   T  +++      N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLTATEVANAIREQNIQVAAGVIGASPSVPGTQLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      +    +      
Sbjct: 236 SVNARGRLKTED-------------EFGNIIVKTTPDGGVTYLRDIARVELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +        L           +          S   
Sbjct: 283 LLDNKPAVALAINQAPGANSLAISDEVRAAMKDLAQDMPAGVEYKIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLSARDATYKAMQEVSGPIIAIALTLVAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   ++R    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAMLLRSHGAKEDFLTRIMNRLLGRFFK 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSVLSALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+ +    G  +  +  I + FG+
Sbjct: 960  -LEHDGHTPLSAAIEASRLRLRPILMTSIAFIMGVVPLVLSTGAGSEMRHAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 93/285 (32%), Gaps = 14/285 (4%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V  +      +   L  +             + V       ++ +R              
Sbjct: 221 VIGASPSVPGTQLQLSVNARGRLKTEDEFGNIIVKTTPDGGVTYLRDIARVELAASEYGL 280

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
               +    V L            + + V+  + ++         E        + +R  
Sbjct: 281 RSLLDNKPAVALAINQAPGANSLAISDEVRAAMKDLAQDMP-AGVEYKIVYDPTQFVRSS 339

Query: 670 IVGVIISAI-AMLIYIW----IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           I  V+ + + A+ + +         W  ++  +  + + I  T      FG   N  ++ 
Sbjct: 340 IEAVVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLF 399

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++  IG  V+D +VV + + +N+      +S RD   K++ E  G  +       ++V 
Sbjct: 400 GMVLAIGIVVDDAIVVVENVERNI---ENGLSARDATYKAMQEVSGPII-AIALTLVAVF 455

Query: 785 PMAVWG----GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               +     G     FA+ +A   V++A +S+ ++  +   +  
Sbjct: 456 VPLAFMTGLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAMLLR 500


>gi|308185336|ref|YP_003929469.1| preprotein translocase subunit SecF [Helicobacter pylori SJM180]
 gi|308061256|gb|ADO03152.1| preprotein translocase subunit SecF [Helicobacter pylori SJM180]
          Length = 323

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 92/294 (31%), Positives = 155/294 (52%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S +  + ++ LLF  G + GIDF GG  + V   +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVVVSAILVLLALGLLFFKGFSLGIDFAGGSLVQVRYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ +A+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGIELKEKGILSLILALMAIMVYVSFRYEWRFALASVVALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    ID++I+ TL 
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQAIDEAISSTLT 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + L + 
Sbjct: 238 RTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVALLLG 291


>gi|307153214|ref|YP_003888598.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 7822]
 gi|306983442|gb|ADN15323.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 7822]
          Length = 1043

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 78/572 (13%), Positives = 168/572 (29%), Gaps = 40/572 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +G +           +DRFP   P             + + +  +
Sbjct: 8   KRPVFSSVCAIIILLVGSISIF-----TLPVDRFPDISP-------------TQIQVTAN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
            +      ++    + L   +        I   S     + I+++F  SR K+  A  V 
Sbjct: 50  YNGANAEVVENAVTNILERQINGVEGMRYISSSSSNDGTSSISVTFDSSRDKDIAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V S+L  D ++  +  + E    ++      +      +  S    R  +D +  
Sbjct: 110 NQVALVESQLPEDVQRLGVQVSKESNNILLGIGLYDENQQYDNVFLSNYADRYLVDALKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    DPSRL     T   +       N        G       
Sbjct: 170 VKGVGNVRIFGERRYAMRLWLDPSRLASRGLTMQNVIQSLSEQNIQVGAGKIGAEPAPQG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +  + +++                +    +   +                    
Sbjct: 230 QAYQLDLRAESQLT-------------DPAQFENLLLKADENVGLVRLKDVGRAELGAQD 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                               A  +            A L           V         
Sbjct: 277 YNSFLRYRGQEAVGVGVYQLAGSNALDVAHRVKQELARLSKTFPAGIQYRVAFDTTLFVE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  +  GLV++V+ + +   +  L+   +I ++++ T A + + G ++   +
Sbjct: 337 ESLKEVVITLLMSIGLVILVILLFLQDWRTTLIPSLTIPVSLVGTFAYVKVFGFSINSLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYST-IFDSNITALIAT 474
           + G+ L  G+ VD  I+V E+I      +  +   +     +  +   I  S +   +  
Sbjct: 397 LFGLTLATGMVVDDAIIVVEQISRYIQERGMNPKEAASQAMAELFGAVIATSLVLMAVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V FF G      + FA+T+  SI IS F AI++  ++   ++R  +     +      F
Sbjct: 457 PVAFFPGTTGALYKQFALTIAFSISISTFLAITLTPSLCALLLRPGQGLPGWLMGPFSKF 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                   +  R+    +       +     L
Sbjct: 517 NQALDWTRRSYRSALIFLSRIRPIIMSIFVAL 548



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    T+ + +  T  +  +FG   N   +  +    G  V+D ++V +++ + +
Sbjct: 363 DWRTTLIPSLTIPVSLVGTFAYVKVFGFSINSLTLFGLTLATGMVVDDAIIVVEQISRYI 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +     ++ ++   +++ E  G  + TS+      +P+A + G+       FA+ +AF I
Sbjct: 423 QE--RGMNPKEAASQAMAELFGAVIATSLVLMAVFVPVAFFPGTTGALYKQFALTIAFSI 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++   +I +   +   +  
Sbjct: 481 SISTFLAITLTPSLCALLLR 500



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 57/141 (40%), Gaps = 14/141 (9%)

Query: 697  ITTLILDITKTLGFFA--LFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLY 751
            I  L + +      FA  L G   ++     ++ LIG +  + +++ +   ++R+     
Sbjct: 899  IIMLAVPLAIMGALFAQMLRGFPNDVYCQIGLVMLIGLASKNAILIVEFANQLREE---- 954

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S      ++  E L   + T+++  + + P+ +    G     S    +  G+++A
Sbjct: 955  --GLSIVKAAIEASQERLRPILMTAISTLLGIFPLVIAVGAGSGSRQSLGTAVFGGMLIA 1012

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
               S+FI   + + +     +
Sbjct: 1013 TFLSLFIVPILYIVVKSLTER 1033


>gi|149175653|ref|ZP_01854273.1| acriflavine resistance protein B [Planctomyces maris DSM 8797]
 gi|148845638|gb|EDL59981.1| acriflavine resistance protein B [Planctomyces maris DSM 8797]
          Length = 1074

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 73/522 (13%), Positives = 148/522 (28%), Gaps = 30/522 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  +G L           + ++P       +                  
Sbjct: 10  RPIFASVLSMVVLLVGSLA-----YFLLPVAQYPEVALPTVV---------VRASYPGAT 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D ++  +    ++  + +              +  +T+SFA     +     V   +  
Sbjct: 56  PDTISKTVATPLEQEINGVDNMVYMDSQATTDGSMTLTVSFALGTDVDQAQVLVQNRVAI 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  + T       +++            +  S     Q  D +   +   
Sbjct: 116 AEPTLPAEVRQIGVTTRKSSPDLMMVIHLYSPDDSRDQLYISNYAYLQIRDILSRLDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  RL  L  T           N      + G + L ++     
Sbjct: 176 DIQVFGGTQYSMRVWLDVERLAALDLTPGDAVQAMRQQNIQVAAGVIGQQPLPETKEAF- 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       +N  T        +    I       R         I           
Sbjct: 235 -----------QVNVNTLGRLQTAEEFGEIILKTGEEGRLVRLNDVARIELGATDYSVRS 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +   T E        L     P   + V          S   
Sbjct: 284 YLGDKNAVALAMFQRPGSNAVATAERIISKVEELSQQFPPGLKHEVIYNPTAFVEESIDE 343

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV + +F+ +   +  +V   +I ++++ T A++  +G +L   S+ G+V
Sbjct: 344 VFSTLWQAGLLVTLTVFVFLQNWRSTIVPTIAIPISLVGTFAVMHAIGFSLNNLSLFGLV 403

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        S   +         S +  + +  +   V   F  
Sbjct: 404 LAIGIVVDDAIVVVENVERLIATGLSPRDATRKAMDEVGSALIATTLVLIAVFVPTAFIA 463

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              G   R FAIT+ +S  IS F ++++  AM   ++R  + 
Sbjct: 464 GISGQFYRQFAITIAVSTAISTFVSLTLTPAMCALLLRPPRK 505



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 81/249 (32%), Gaps = 17/249 (6%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     VRS L       ++     G              +      +E + ++  
Sbjct: 271 RIELGATDYSVRSYLGDKNAVALAMFQRPGSNAV--------ATAERIISKVEELSQQFP 322

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
             +    I N      +   E+        ++  + + +++     W   +     + + 
Sbjct: 323 PGLKHEVIYNPTAFVEESIDEVFSTLWQAGLLVTLTVFVFLQ---NWRSTIVPTIAIPIS 379

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T       G   N  ++  ++  IG  V+D +VV + +    +L  T +S RD   K
Sbjct: 380 LVGTFAVMHAIGFSLNNLSLFGLVLAIGIVVDDAIVVVENV---ERLIATGLSPRDATRK 436

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           +++E     + T++      +P A      G     FAI +A    ++   S+ +   + 
Sbjct: 437 AMDEVGSALIATTLVLIAVFVPTAFIAGISGQFYRQFAITIAVSTAISTFVSLTLTPAMC 496

Query: 821 LFIYDWRAK 829
             +     K
Sbjct: 497 ALLLRPPRK 505



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 58/169 (34%), Gaps = 13/169 (7%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV--AA 725
            +  I     + +++ +      W   L  I  LI+ +      F ++  E +   +    
Sbjct: 890  IVYIFPLCVLFVFLALSAQYESWILPLAVI--LIVPLCLLCAVFGIWLREMDNNILVQIG 947

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             + LIG +  + +++ +  +       T  S       +    L   + T+ +  + V+P
Sbjct: 948  FIVLIGLACKNAILIVEFAK---AEEDTGKSPFQAAVDACRLRLRPILMTAFSFILGVIP 1004

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +    G  +  +    +  G++      +F+     + +     +  
Sbjct: 1005 LVIATGAGSEMRQALGTAVFSGMLGVTLFGLFLTPVFYVVLRKMATRRN 1053


>gi|330502125|ref|YP_004378994.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           mendocina NK-01]
 gi|328916411|gb|AEB57242.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           mendocina NK-01]
          Length = 1043

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 75/569 (13%), Positives = 156/569 (27%), Gaps = 42/569 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++       PQ  + R+PS  P               + L    
Sbjct: 8   RPVFAWVIALFIVLFGVIAI-----PQLPIARYPSVAPP-------------SVALYASY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  L      L       +K       S+      +IT +F      E     V  
Sbjct: 50  PGATPKTLNDSVVSLVERELSGVKNLLYFESSVDTSGTAQITATFKPGTDPELAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V S+L    +++ L   +     +++            +     + R  + ++   
Sbjct: 110 RIKAVESRLPQVVRQSGLQVESAASGFLMMIGMTSPDGQFDEVMLGDYLARNIVPELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP++L     T   +S      N        G        
Sbjct: 170 EGVGRVQLFGA-EQALRIWVDPNKLNAFGLTMGDLSQAIEQQNAQIAPGRLGDEPALPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +    +        R        +       
Sbjct: 229 RLAVPLTVEGQL-------------ETPEQFAAVVLRATADGSRVTIGDVARVELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                        A        +   T +      A L           V          
Sbjct: 276 GFSNRENGVSATSAAIQLSPGANAVRTAQAVRDRLAELAPSMPTGMSYSVPFDTAPFVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+      + ++ T A++ L G ++   ++
Sbjct: 336 SIEKVIYTLLEAMVLVFLVMFLFLQNMRYTLIPAIVAPIALLGTFAVMLLAGFSINSLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERLMATRGLSPREATLQAMKEITGAVIGITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFF 532
           + F  G      + F ++M +SIL S F A+++  A+    +                F 
Sbjct: 456 MAFASGSVGVIYQQFTLSMAVSILFSAFLALTLTPALCATLLRPVSADHHEKRGFFGAFN 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSI 561
              + +  ++       VG S    +  +
Sbjct: 516 RGFERLTERYTGRVSRLVGRSGRMMVVFM 544



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 86/247 (34%), Gaps = 14/247 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q    S +                 ++V   + +     ++   +
Sbjct: 258 SRVTIGDVARVELGAQSYGFSNRENGVSATSAAIQLSPGANAVRTAQAVRDRLAELAPSM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I K I  ++ + + + + +++     R+    A+ A   L 
Sbjct: 318 PTGMSYSVPFDTAPFVKVSIEKVIYTLLEAMVLVFLVMFLFLQNMRYTLIPAIVAPIAL- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T     L G   N   +  ++  IG  V+D +VV + +     + T  +S R+  
Sbjct: 377 ---LGTFAVMLLAGFSINSLTMFGMVLAIGIIVDDAIVVVENV--ERLMATRGLSPREAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            +++ E  G  +  ++      +PMA   GSV      F + MA  I+ +A  ++ +   
Sbjct: 432 LQAMKEITGAVIGITLVLTAVFIPMAFASGSVGVIYQQFTLSMAVSILFSAFLALTLTPA 491

Query: 819 ILLFIYD 825
           +   +  
Sbjct: 492 LCATLLR 498



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 67/179 (37%), Gaps = 6/179 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +++   +P            +  +   +  ++ V+ + +  L+   +   W   L  
Sbjct: 835  AEMERLVAQLPQGYAVAWTGQSLQERQSAAQAPMLMVLSALVVFLVLAALYESWSIPLSV 894

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +  + L +   +    L G+  ++     ++T+IG S  + +++ +  R   +L+    S
Sbjct: 895  MLVVPLGLLGAVAAVMLRGLPNDVFFKVGMITIIGLSAKNAILIVEFAR---QLHGEGRS 951

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSS 812
              D    +    L   + TS+A  + V+P+ +  G       +    +  G++     +
Sbjct: 952  LVDAAVTAARLRLRPILMTSLAFTLGVVPLMLAAGASAETQHAIGTGVFGGMLSGTLLA 1010


>gi|171912831|ref|ZP_02928301.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 1076

 Score =  180 bits (456), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 158/552 (28%), Gaps = 41/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G +           ++++P   P               +V+    
Sbjct: 10  RPIFAAVLSILITLVGGISLF-----TLPIEQYPEVAPPT-------------VVVTASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  ++ +   +   E +   S     +    IT++F      +    +V  
Sbjct: 52  PGANPQVVSETVANPIEQEINGVENMLYMSSACTADGVCTITVTFKLGTDLDMAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    +KL  + ++  + T  +     ++           ++           D +   
Sbjct: 112 RVSIATAKLPEEVRRLGITTIKQSPNLAMVVHLLSPNDTYDSLYVGNYAFLNVKDHLARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP ++     T +++       N      + G +      
Sbjct: 172 PGVGSVQVFGARDYAMRIWLDPDKISSRSMTPSEVVAAIREQNVQVAAGVLGAQPAPAGT 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V  +  ++             +  +    I       +         +       
Sbjct: 232 PYQLTVTTQGRLT-------------EPSQFENIIVKRGENGQVTRVKDVARVELAARDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        +       +   T +  G     L +   P     +          
Sbjct: 279 NLDSFLNGKPAAALVLFQLPGSNALETRQAVGKKMDELSSAFPPGLKYDIVYDTTIFTQK 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  L+   ++ ++++ T  ++ L G +L   ++
Sbjct: 339 SIDAVVHTFIEALLLVVLVVIVFLQNWRASLIPLLAVPVSIVGTFLVMKLFGFSLNNLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +        S   +           +    +      V  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNMALGLSPLQAARRAMEEVSGPVVAVAVVLTAVFVPT 458

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK--SIDINPLSRFF 532
            F     G   + FA+T+ +S +IS F ++++  A+   +++    K           F 
Sbjct: 459 AFMTGLTGQFYKQFALTIAVSTIISAFNSLTLSPALSAILLKPHHAKPDFFQRLLNFFFG 518

Query: 533 LIPDCIAIQFMR 544
                    F +
Sbjct: 519 WFFKLFNWTFDK 530


>gi|313681927|ref|YP_004059665.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154787|gb|ADR33465.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 1043

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 71/590 (12%), Positives = 166/590 (28%), Gaps = 43/590 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G +           + + P+  P               +V+    
Sbjct: 9   RPIFSAVIAMIIMLLGFVAI-----KTLPISQLPNLTPPT-------------VVVTAQY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQ----IQNKITLSFADSRFKENIADKVT 116
                  +       L S +   +G+   S +         IT +F     ++  A  V 
Sbjct: 51  PGADAQTIANNILTPLESQISGADGLMYMSSKAAALPGSATITCTFNIGVNQDMAAVDVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V ++L    +   +    +    +++           A   S  I    +D++  
Sbjct: 111 NRINSVLAQLPQTTRDLGVTVQKKTSDILLIVAITSPDGSYDATGISNYISANLLDEVKK 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +     +    +    +P ++  L  + ++++      N        G     D 
Sbjct: 171 IPGAGRSQIFGQRDYAMRVWLNPDKMASLGVSASEIAAAIKDQNLQVSPGRLGQAPTNDE 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  K   S                +    I   +             +      
Sbjct: 231 QMWTMQLTSKGRFS-------------TPEEFQNIIVRAKNDGSMIRLRDVARVELGSQN 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T          L           +         
Sbjct: 278 YEFFGRVNGKPAAMIGIFADVNANALDTSAAVAAKMEKLSKKFPKGITYDIPYDTTDFVK 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  ++   SI +++      + LLG ++   +
Sbjct: 338 ISIEEVVFTLLASIVLVSMVIYLFLQSSRAAMIPILSIPISLTGAFIGMYLLGYSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYS---TIFDSNITALI 472
           + G+VL IG+ VD  I+V E +    +  + S   +     ++       I        I
Sbjct: 398 LFGLVLAIGIVVDDAIVVIENMERILQHEKLSPREAAIKAMAQISGPVVAIVLVMCAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
               L    G   + FA T+ +S++ S F A++   A+   I+  K            F 
Sbjct: 458 PATFLGGMTGQLYKQFAATIAISVVFSGFMALTFAPAIGALIL--KHHDKEPARFFRWFN 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                +   ++R   + +  S++F +  +   F  G  +       + + 
Sbjct: 516 RAFGNMTESYVRRSGFMIRKSLIFLVIYLSTYFFIGFFHKTLPSAFLPME 565



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 89/251 (35%), Gaps = 7/251 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  V       Q  +   +        +        +++  +  +    +K+++  
Sbjct: 261 SMIRLRDVARVELGSQNYEFFGRVNGKPAAMIGIFADVNANALDTSAAVAAKMEKLSKKF 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P     +         +  I + +  ++ S + + + I++       A+  I ++ + +T
Sbjct: 321 PKGITYDIPYDTTDFVKISIEEVVFTLLASIVLVSMVIYLFLQSSRAAMIPILSIPISLT 380

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  L G   N   +  ++  IG  V+D +VV + M     L    +S R+   K++
Sbjct: 381 GAFIGMYLLGYSINTLTLFGLVLAIGIVVDDAIVVIENM--ERILQHEKLSPREAAIKAM 438

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI-LL 821
            +  G  V   +      +P    G   G +   FA  +A  +V +   ++  A  I  L
Sbjct: 439 AQISGPVVAIVLVMCAVFIPATFLGGMTGQLYKQFAATIAISVVFSGFMALTFAPAIGAL 498

Query: 822 FIYDWRAKNAR 832
            +     + AR
Sbjct: 499 ILKHHDKEPAR 509



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 60/166 (36%), Gaps = 10/166 (6%)

Query: 673  VIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV-AAVLT 728
            +I++   M++Y+    +  +W   +  +  +   I        L     N       +LT
Sbjct: 873  MIMAFALMMVYLILAALYERWTLPISIMLAVPYGIMGAYAVVWLIPFLNNNVFFQIGLLT 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LI  S  + ++V +   +  +L     S  D   ++        + TS A    +LP+  
Sbjct: 933  LIALSAKNAILVVE-FAEEQRLM--GKSIYDSAMEAARLRYRPMMMTSFAFLAGMLPLIF 989

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                G +   S  + M  G++ A     +    +  ++   + K A
Sbjct: 990  SSGAGAAGRFSIGVAMFGGMLAATFIERYFIPFLYYWVSTIKEKIA 1035


>gi|23015938|ref|ZP_00055701.1| COG0841: Cation/multidrug efflux pump [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1059

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 76/590 (12%), Positives = 165/590 (27%), Gaps = 39/590 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  IG +           + ++P   P               +V+    
Sbjct: 10  RPIFATVVSVLITIIGAIT-----YFALPVAQYPEIAPPT-------------IVVSASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +    +  L   +   E +   + +   +   K+T++FA     +     V  
Sbjct: 52  PGASAQVVADTVATPLEQQINGVENMLYLNSQATGDGNLKLTVTFALGTNLDTAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  D K+  +         +++   N        +  S     Q ID +   
Sbjct: 112 RVAVATARLPDDVKRIGITVAKNSPDMLMVVHLNSPDGSREQLYLSNFATLQMIDVLARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +      T  ++       N      +     + +  
Sbjct: 172 DGVGEVRIFGARDYAMRVWIDPDKAAARNLTAGEVVKALQAQNVQIAAGVLDQPPIPNQG 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V+ +  +                 +    I   +   R         I       
Sbjct: 232 AFQFSVQTQGRL-------------LDPAQFGDVIVKADATGRMVRLKDVARIELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T +        L           +          
Sbjct: 279 SVNGYLNGKNAVPVAVFQRPGSNALATADRVIAKVEELSKTFPSGVSYTIAYNPTQFIAQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  L+   +I ++++ T A+L  LG +L   S+
Sbjct: 339 SVKAVIKTIFEAVLLVVVVVILFLQTWRASLIPLAAIPVSLVGTFAVLGALGYSLNNLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL +G+ VD  I+V E +    +   +   +          A  +I        I  
Sbjct: 399 FGLVLAVGIVVDDAIVVVENVERNMKDGMNARSAAHQTMDEVGSALISIALVLCAVFIPA 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   R FA+T+  S +IS+  ++++  A+   + R             R  + 
Sbjct: 459 AFIPGISGQFFRQFAVTIAASTVISLIVSLTLSPALCALLFRGHGPLDHHDETGWRKVVA 518

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                      R  G   S+  ++     L        I   G       
Sbjct: 519 RFFAWFNHNFDRLAGGYGSLTRTVVRKSALMLVIYGGLIGAAGVEFFQTP 568



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 57/144 (39%), Gaps = 7/144 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              G+     S + + + +  +++ W      +  + + +   +    + G+  N+ A   
Sbjct: 879  NNGLFVFAASVLFVFLLLAAQYESWSLPAAVVLIVPMCLLAAVTGLIIRGLPINILAQIG 938

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             + LIG +  + +++ +  R   +  +  +   +    +    L   + TS+A  + VLP
Sbjct: 939  FIVLIGLAAKNAILIVEFAR---QGESEGLDRIEAAVHAGRTRLRPILMTSLAFILGVLP 995

Query: 786  MAV---WGGSVIGSFAIPMAFGIV 806
            +      G  +  S    + +G++
Sbjct: 996  LVAGTGAGAEMRQSLGTTVFYGML 1019


>gi|300771929|ref|ZP_07081800.1| AcrB/AcrD/AcrF family protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300761315|gb|EFK58140.1| AcrB/AcrD/AcrF family protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 1056

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 75/575 (13%), Positives = 163/575 (28%), Gaps = 41/575 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  +G +           + ++PS  P               + +  +
Sbjct: 8   KRPITAIVISILITILGTISVA-----TLPISQYPSIAPPT-------------VSVTAN 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKVT 116
                   ++      + S +    G+   S       Q++IT++F      +     V 
Sbjct: 50  YTGADAQTVEQTVTTPIESQINGTPGMIYMSSNSTSNGQSQITVTFEVGTDIDIATLDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  + T       ++L      +        S  I     D I  
Sbjct: 110 NRVGIAEPSLPEAVRRLGVTTRKANTDILMLVSLVSPKGTRDDKFLSNYINLYIKDAIMR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    D ++L  L  T A +S      N    G   G R    S
Sbjct: 170 VKGVGDATVFG-QPFSMRVWLDANKLSNLGLTPADVSNAIQEQNIRMPGGSVGGRPQESS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y +    ++S +                   I                 +      
Sbjct: 229 TVFEYPILTDGDLSNVE-------------DFEDIIVKANTDGSIVLLKDVARVELGQFS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                     V    + +     +   T +        L+         +V    +    
Sbjct: 276 YSTSTKTDGMVSTGMMINQTPGGNAVETADGIYKALEQLKKSFPDDVDYVVGYETISVVN 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F  +   +  L+   +I ++++ T     L G ++   +
Sbjct: 336 ASIESVIHTLLEALLLVTVVVFFFLQSWRATLIPVLAIPVSIVGTFIFFLLFGFSINNLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +   VL IG+ VD  I+V E ++      +     +         + +    +      V
Sbjct: 396 MLAFVLAIGIVVDDAIVVVEAVQHYIDHYKLDAKEATRRAMKDITAPVIAIALILSAVFV 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      + FAIT+ +S+++S F A+++  A+   ++R   +          F+
Sbjct: 456 PVGFIPGMVGKLYQQFAITIAVSVMLSAFIALTLTPALCSLMLRPTSVNKEARGLNKFFY 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                      +             +  I LL   
Sbjct: 516 KFNVWFEKVTNKYSKGVQQCIRKAPLVLIILLCIF 550



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLT 728
            +I +   + +++ +      W      + ++ L +   +    L   ++ N+ A   ++T
Sbjct: 874  MIFALCILFVFLLLASLYESWSVPFSILLSVPLGVFGAILTLILIPRLDNNIFAQIGLVT 933

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +IG +  + +++ +  ++        ++  D    ++   L   + TS+A  + ++P+ +
Sbjct: 934  IIGLAAKNAILIVEFAKE---RVDIGMNLIDATLDAVKLRLRPIIMTSLAFILGIIPLML 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G     +    +  G+  A   +IFI   + + I        ++
Sbjct: 991  STGAGAVSRQTIGWTVFGGMTAATFLAIFIVPVLFVAITRMAYGKKKL 1038



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V            S +        ++  Q   G++V     +    +++ +  
Sbjct: 259 SIVLLKDVARVELGQFSYSTSTKTDGMVSTGMMINQTPGGNAVETADGIYKALEQLKKSF 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P             +    I   I  ++ + + + + ++     W   L  +  + + I 
Sbjct: 319 PDDVDYVVGYETISVVNASIESVIHTLLEALLLVTVVVFFFLQSWRATLIPVLAIPVSIV 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  FF LFG   N   + A +  IG  V+D +VV + ++  +  Y   +  ++   +++
Sbjct: 379 GTFIFFLLFGFSINNLTMLAFVLAIGIVVDDAIVVVEAVQHYIDHY--KLDAKEATRRAM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLF 822
            +     +  ++      +P+    G V      FAI +A  ++++A  ++ +   +   
Sbjct: 437 KDITAPVIAIALILSAVFVPVGFIPGMVGKLYQQFAITIAVSVMLSAFIALTLTPALCSL 496

Query: 823 IYD 825
           +  
Sbjct: 497 MLR 499


>gi|196234206|ref|ZP_03133038.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chthoniobacter flavus Ellin428]
 gi|196221765|gb|EDY16303.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chthoniobacter flavus Ellin428]
          Length = 1083

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 75/698 (10%), Positives = 180/698 (25%), Gaps = 54/698 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +    G L  L        + ++P   P               + +    
Sbjct: 10  RPVFASVISIVTVIAGTLAIL-----GLPVSQYPEIAPPT-------------VTITTVY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +     +   S +   +   K+T++F      +    +V  
Sbjct: 52  PGANAQTVSSTVATPIEEQVNGVEHMLYMSSQCTNDGAMKLTVTFQVGTNLDVAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +          V+   +        +  S     Q  D+I   
Sbjct: 112 RVAIAQPQLPAEVQQQGITIKKASPDITVVVALSSPDNSHDTVFMSNYATLQIKDEIARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
                          +    DP +L     T   +       N      + G   L    
Sbjct: 172 PGVGDITIFGVRDYAMRLWLDPDKLASRNMTVGDIVTAVREQNVQVAAGIIGGPPLPPGT 231

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY +  +  ++                +    +       R         +    A 
Sbjct: 232 TQFQYTMNVQGRLT-------------DPSQFSNMVVNVGQDGRITQLRDVGRVELAAAD 278

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +   T +        L+          +         
Sbjct: 279 YSTAMTYDGRPAVAMAIFQLPGSNSIQTADAIYKKMEELKKRFPAGVEYEIPYDTTRFVR 338

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T     GLV +V+ + +   +  LV   +I ++++ T A + + G ++ + S
Sbjct: 339 DSIKDVIITLVEGIGLVALVVLIFLQTWRTSLVPLIAIPVSLVGTFAAMFVAGFSMNILS 398

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E I        S   +           I           + 
Sbjct: 399 LFGLVLAIGIVVDDAIVVVENIERWIEHGLSPRDAAFKAMDEVTPAIIAIAFGLSAVFIP 458

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G   R FA+T+  S L+S F ++++  A+   +++ + ++         + L
Sbjct: 459 VAFVSGITGQFYRQFALTIAFSTLLSAFNSLTLSPALAALLLKPRGVRQDWFTRSMNWVL 518

Query: 534 IPDCIAIQ--------------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                                     R   + + +   +  +       +  G       
Sbjct: 519 GWFFRLFNKTFDAGNRVYITVLRKAVRMSAITLIVYGGLVFLAYKGLKTVPTGFIPPQDQ 578

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              +++ +  D + +    ++L           G +            S   +    M  
Sbjct: 579 GYLIVSVQMPDAASIERTQKTLTELSNVALKTPGVRGAFTVAGLNVLSSSNSSAAGVMFT 638

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             +           T +      ++        +++  
Sbjct: 639 PLLPFDQRAGRADMTAMAIAARLKQQFANIPEALVLVF 676



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 80/230 (34%), Gaps = 11/230 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             L  V     +      +          +   Q    +S+     +    +++ +  P 
Sbjct: 264 TQLRDVGRVELAAADYSTAMTYDGRPAVAMAIFQLPGSNSIQTADAIYKKMEELKKRFPA 323

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  R+ I+  I+ ++     + + + I  + W  +L  +  + + +  T
Sbjct: 324 GVEYEIPYDTTRFVRDSIKDVIITLVEGIGLVALVVLIFLQTWRTSLVPLIAIPVSLVGT 383

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N+ ++  ++  IG  V+D +VV + +    +     +S RD   K+++E
Sbjct: 384 FAAMFVAGFSMNILSLFGLVLAIGIVVDDAIVVVENI---ERWIEHGLSPRDAAFKAMDE 440

Query: 768 TLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIF 814
                +  +       +P+  V G  G     FA+     I  +   S F
Sbjct: 441 VTPAIIAIAFGLSAVFIPVAFVSGITGQFYRQFALT----IAFSTLLSAF 486



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 77/224 (34%), Gaps = 10/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            + + + +  +   + A           + E+V     +        ++ +    G   + 
Sbjct: 827  QRYDLYMSAEINGTTAPGYSSGQGIAAMREVVNKVLPKEYAFEWTDLAFQEELAGNTALF 886

Query: 675  ISAIAMLIYIWIRFKW---YFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTL 729
            I  + +L ++W+        FAL     LI+ +    G   ++   ++ N+      + L
Sbjct: 887  IFPLCIL-FVWLTHSAEYESFALSTAIILIVPMCLLCGIAGVWARHMDNNIFTQIGFVVL 945

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
             G SV + V++ +  +   +     ++  +   ++    L   + TS      V+P+   
Sbjct: 946  AGMSVKNAVLIVEFAK-QQQENNPGMTAAEAAIEAARLRLRPILMTSFTFIFGVMPLIFA 1004

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G  +  +    + FG++      +F        I     KN
Sbjct: 1005 TGAGAEMRQAMGTAVFFGMLGVTFFGVFFTPVFYTVIRKLTGKN 1048


>gi|253700472|ref|YP_003021661.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Geobacter
           sp. M21]
 gi|251775322|gb|ACT17903.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Geobacter sp. M21]
          Length = 1052

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 65/570 (11%), Positives = 155/570 (27%), Gaps = 34/570 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GLL           + ++P   P          +   + V     
Sbjct: 8   RPIFAWVIAIVVMLGGLLAI-----KALPVSQYPPIAPP---------QISINAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        I L+F           +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQKMNGIDNLLYMSSTSDSAGAVSINLTFRAGTDPNVAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +         +++     +    +  + +  ++    D +   +   
Sbjct: 114 ATPLLPQVVQRQGVQVVKSTRNFLLIVGLVSEDESLNRHQLTDYMVSNIQDIVSRVQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D  +L     T   +       N       FG +          
Sbjct: 174 EVTVFGSQ-NAMRVWMDAEKLNNYKLTPNDVVNALQAQNAQVSAGQFGGQPAVQGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                             
Sbjct: 233 TITARTLL-------------QSPEQFDQIVLRTNPDGSTVKLRDVAKTDVGTENYDILA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +        A  +   T +      A L          +           S   
Sbjct: 280 RYKGKPVAAMALRLAAGANALDTADRVKAKMAELEKFVPAGAKVVYPYDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV I++F+ +   +  L+   ++ + ++ TL +L   G ++   ++  +V
Sbjct: 340 VLKTLMEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGTLGILFAAGFSINTLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + IGL VD  I+V E +      +  S   +      +  S ++          + + FF
Sbjct: 400 IVIGLLVDDAIVVVENVERIMTDEGLSPHDATVKSMGQITSALWGIATVLCAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F++T+  ++++S+ TA  +  A+   +++  +   +       F      
Sbjct: 460 GGSTGVIYRQFSVTIVSAMILSVLTAQILTPALCATLLKPVQKGHLP-GEGGWFSGFFRW 518

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
               F  AR     I        +  LF +
Sbjct: 519 FNKVFDAARHKYESIVGNSFGKPLRYLFIY 548



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  DI  +        +        +++     ++    ++ + VP 
Sbjct: 260 VKLRDVAKTDVGTENYDILARYKGKPVAAMALRLAAGANALDTADRVKAKMAELEKFVPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  ++ +   + I +++  +     L     + + +  T
Sbjct: 320 GAKVVYPYDTTPFVKISIEEVLKTLMEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG     G   N   + A++ +IG  V+D +VV + +     +    +S  D   KS+ +
Sbjct: 380 LGILFAAGFSINTLTMFALVIVIGLLVDDAIVVVENV--ERIMTDEGLSPHDATVKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                   +       +PMA +GGS       F++ +   ++++  ++  +   +   + 
Sbjct: 438 ITSALWGIATVLCAVFIPMAFFGGSTGVIYRQFSVTIVSAMILSVLTAQILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 75/252 (29%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N+   +          +      + ++G  +  +     PG S  +         + 
Sbjct: 793  VRNNKGEMVPFSSFATARWEYSSPRLERYNGIPSMEIMGSAAPGVSTGEAMAEMEAIAEK 852

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + +++  +A+     +   W      +  L L
Sbjct: 853  LPQGISYEWTGLSYEEKAAGAQAPALYAISLLVVFLAVA---ALYESWTIPFVNLLMLPL 909

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    L  +  ++     +LT +G S  + +++   ++  M          +   
Sbjct: 910  GLVGAITAVTLRVLPNDIYLQIGLLTTVGLSTKNAILIIQFIKDQMNQ---GHELVEATL 966

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             ++   L   + TS+A F   LP+A+    G     +    +  G++ A    +      
Sbjct: 967  TAVKIRLRPVIMTSLAFFFGTLPLALTKGAGAGAQNAIGTAVTGGLLSATFIDLIFIPFF 1026

Query: 820  LLFIYDWRAKNA 831
             + +  +  K  
Sbjct: 1027 FVMVTKYFMKKK 1038


>gi|108762117|ref|YP_635353.1| HAE1 family efflux transporter [Myxococcus xanthus DK 1622]
 gi|108465997|gb|ABF91182.1| efflux transporter, HAE1 family, inner membrane component
           [Myxococcus xanthus DK 1622]
          Length = 1040

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 73/616 (11%), Positives = 166/616 (26%), Gaps = 47/616 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I  +G +       P   ++++P                   + +   
Sbjct: 8   RRPVFASVVSIIITLVGAISI-----PILPIEQYPDLSLPV-------------VQVTAT 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   L        I   S     + IT++F   R  +  A  V 
Sbjct: 50  YIGASAETVESAVTTVLERQLNGVEGMRYISSTSSNTGVSTITVTFDPGRDLDIAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +   +++L        +  T  +   ++      ++        S        D +  
Sbjct: 110 NRVATASAQLPAAVNALGVTITKAQTQLLMAFGLFDEENRYETGFLSNYADVFIRDALLR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DPS L +       +       N        G       
Sbjct: 170 VTGVGDVRIFGERRFAMRLWLDPSELARRGLAATDVVNALRAQNVQIGAGQVGQPPAPPG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ V    +++                +    +                        
Sbjct: 230 QTYQFTVRVLGQLTSAE-------------EFGNIVVQQGPDGSLVRLKDVGRAELGAEN 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +     +        L+    P            A  
Sbjct: 277 YGQLLRFNGREAVGLGIFQLPGSNALDVRDGIVAELKRLKGNFPPGMRYQRAFDTTAAVQ 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  LV   ++ ++++ T   ++  G ++   +
Sbjct: 337 ASIEEVLVTLGEAIFLVVLVIFIFLHGWRSVLVVATTLPVSLVGTFLFVNAFGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIAT 474
           + G+ L  GL VD  I+V E +     ++      +   G  +     +  + + + +  
Sbjct: 397 LFGLTLATGLVVDDAIIVIENVERTMEQDDVGPREATHRGMKQVAGALVAIALVLSAVFV 456

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V FF G      R FA+T+  SI +S   A+++  A+   ++R  + +   +  +    
Sbjct: 457 PVSFFPGTTGIIYRQFALTLAFSISLSALVALTLSPALCAILLRPHEGQKWKVFRMFDRG 516

Query: 533 LIPDCIAIQFM-------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           L     A   M             +   +  +   +    T       + +G + + V  
Sbjct: 517 LDAFRDAYGRMLAKLIGPLRWPVVIAFVVCLAGTILVYRLTPTGFIPGEDQGYLIIAVQG 576

Query: 586 NRPVDLSVVRSNLESL 601
                L   R+ L   
Sbjct: 577 PEGTSLDYTRNVLLQA 592



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 80/234 (34%), Gaps = 5/234 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L +   G +   N        +           +  ++  +K+      P    Q  
Sbjct: 269 RAELGAENYGQLLRFNGREAVGLGIFQLPGSNALDVRDGIVAELKRLKGNFPPGMRYQRA 328

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +   +    +       + +L+       W   L   TTL + +  T  F   F
Sbjct: 329 FDTTAAVQASIEEVLVTLGEAIFLVVLVIFIFLHGWRSVLVVATTLPVSLVGTFLFVNAF 388

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N   +  +    G  V+D ++V + +     +    +  R+   + + +  G  V 
Sbjct: 389 GFSINTLTLFGLTLATGLVVDDAIIVIENV--ERTMEQDDVGPREATHRGMKQVAGALVA 446

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            ++      +P++ + G+       FA+ +AF I ++A  ++ ++  +   +  
Sbjct: 447 IALVLSAVFVPVSFFPGTTGIIYRQFALTLAFSISLSALVALTLSPALCAILLR 500



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 65/163 (39%), Gaps = 9/163 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +I     + +++ +      +   L  +  + + +   LG   L G++ ++     ++ L
Sbjct: 872  LIFGLGVVFVFLVLSAQYESFALPLVILLGVPVAMLGALGLQNLRGLQNDVFCQVGLVML 931

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G +  + +++ +   + ++      S  D    +    L   + TS A  + V+P+ + 
Sbjct: 932  VGLASKNAILIVE-FAEQLRHE--GRSVEDAAIHAAQTRLRPILMTSFAFLMGVVPLMLA 988

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G S   S    +  G++++   ++     + + +   R +
Sbjct: 989  SGAGASARKSLGTTVFGGMLLSTFVNLIFIPVLYVVLEAARLR 1031


>gi|42520130|ref|NP_966045.1| preprotein translocase subunit SecF [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|99034746|ref|ZP_01314674.1| hypothetical protein Wendoof_01000506 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|42409867|gb|AAS13979.1| protein-export membrane protein SecF [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 291

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 94/291 (32%), Positives = 165/291 (56%), Gaps = 10/291 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIPD + I+F + R     ISI+  I SI  +   G+N GIDF GGI + + +      
Sbjct: 4   RLIPDNLDIKFSKYRDLTALISIILIIFSIFTVVLRGVNLGIDFAGGILIEIKS-----S 58

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
               S L++L+    + Q+     N ++R +    D   + ++ ++      ++    + 
Sbjct: 59  DENHSILDALKENGFTVQSSKAGDNLVMRFK----DEGDEDKIKKIKSILEEKLGSSISY 114

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  + VGP+IS   I +G++ ++I+ + +  Y+W RF W      IT LI D+  T+GF 
Sbjct: 115 RKIDYVGPQISSTQIFEGMLSMLIAIVGIFFYVWFRFNWQCGFSGITALIHDVILTVGFI 174

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L GIEFN+++VAA+LT+IGYS+N+ V++YDR+R+  +   +     +++D SIN TL R
Sbjct: 175 SLTGIEFNISSVAALLTVIGYSINNSVIIYDRIREYRRSGKSGR-MSEVVDASINATLFR 233

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++ TS    ++ LP+ +     +  F++ + FGI++   S+IFI+APIL +
Sbjct: 234 TILTSGTTLLAALPLVLICTDAVRDFSLIIFFGILIGTCSAIFISAPILTY 284


>gi|301630809|ref|XP_002944509.1| PREDICTED: acriflavine resistance protein B-like [Xenopus
           (Silurana) tropicalis]
          Length = 1028

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 86/685 (12%), Positives = 187/685 (27%), Gaps = 42/685 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M       +   ++   GLL           + ++P   P               +++  
Sbjct: 7   MHRPVLAWVSACVVMLAGLLSIW-----LLPVSQYPDIAPPA-------------VLIRA 48

Query: 61  DEDDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKV 115
                    ++      L   LK           S    Q ++ L+F+     +    +V
Sbjct: 49  SYPGASAQAVENSVTKVLEQELKGVERLMYFSSSSSASGQAELLLTFSQGTDIDTALIQV 108

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                    +L    + N L     +   +++             + +  +     D I 
Sbjct: 109 QNLANQAVRRLPSPVQLNGLQVYKLQNSFLMIVSMYDQTDRMSDTDIADWMAATLQDPIS 168

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             E              +    DP +L       + +       N        G R   +
Sbjct: 169 RIEGVGSLRSFDSP-YAMRIWLDPHKLNSYGLIPSDIVEAVRTQNADLSVGELGARPSPE 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  V     +                 +    +                 +     
Sbjct: 228 GQHLNVTVTALSRL-------------QTPEQFREIVIKTLPNGAALRLEQVARVELGSE 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  L     +          +   T +      A L          I  E +    
Sbjct: 275 AYQSTSRLNGHPASAFAVMLTPGANAIRTADAVKQRIAQLAPQFPQGLKVIYPEDSTRFI 334

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T     GLV++V++M +   +  L+   ++ + ++ T A+L+L G ++   
Sbjct: 335 KLSIREVVKTLFEAMGLVILVMYMFLGNWRATLIPAITVPVVLLGTFAVLALGGYSINTL 394

Query: 416 SIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIA 473
           ++ G+VL IGL VD  I+V E ++   +        +         S  +  S +   I 
Sbjct: 395 TLFGMVLAIGLLVDDTIVVVENVQRIMHEDGLDAEAATRRSMDEITSALVGVSLVLGAIF 454

Query: 474 TVVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
             + FF G  G   R F++T+ +S+ +SM  AIS   A+   ++R               
Sbjct: 455 LPMAFFPGSVGVIYRQFSVTLVVSMALSMLMAISFTPALCARLMRSGDG-HRARAEGRMQ 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +A    R   +G+   +L  +               + +G + +     + V  
Sbjct: 514 GFYQRLLAGVLARPLRFGLLYLLLVGVMGYTYPRLPTAFIPDEDQGTVMVRFKLPQGVTA 573

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                  ++++   ++ +  + +  +        G           +   I      +T 
Sbjct: 574 DRTLEVAKAVEQYFLTEEKTNTDAVYTASGLSFDGAGQNAGMAYVSLSDWIRRSGAANTA 633

Query: 652 QNTEIVGPKISRELIRKGIVGVIIS 676
           Q            L    +  ++ +
Sbjct: 634 QAIADRAMARLGNLRNAEVFAMVPA 658



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 80/233 (34%), Gaps = 6/233 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  V       +    + +      +    +     +++     ++    ++    P   
Sbjct: 263 LEQVARVELGSEAYQSTSRLNGHPASAFAVMLTPGANAIRTADAVKQRIAQLAPQFPQGL 322

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLG 709
                    +  +  IR+ +  +  +   +++ +      W   L    T+ + +  T  
Sbjct: 323 KVIYPEDSTRFIKLSIREVVKTLFEAMGLVILVMYMFLGNWRATLIPAITVPVVLLGTFA 382

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             AL G   N   +  ++  IG  V+D +VV + +     ++   +       +S++E  
Sbjct: 383 VLALGGYSINTLTLFGMVLAIGLLVDDTIVVVENV--QRIMHEDGLDAEAATRRSMDEIT 440

Query: 770 GRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
              V  S+      LPMA + G   VI   F++ +   + ++   +I     +
Sbjct: 441 SALVGVSLVLGAIFLPMAFFPGSVGVIYRQFSVTLVVSMALSMLMAISFTPAL 493



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 65/199 (32%), Gaps = 7/199 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694
            E +         +  +           ++   K ++   +S + + + +   ++ W    
Sbjct: 827  EAMAWVERAANRMQGVTYEWSGLSYEEKKSSGKAMLLYGVSLLFVFLCLAALYENWIVPC 886

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
              +    L +   +   +L  +  ++     +LT +G +  + +++ +     +    T 
Sbjct: 887  AVLLVTPLGVLGAMLAVSLRSLPNDIYFQVGLLTTMGLAAKNAILIVEFAEAELL---TG 943

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASS 811
             +    + K+    L   + TS+A    V P+A+  G    S       +  G+V     
Sbjct: 944  ATALVAVLKAAGLRLRPILMTSLAFGAGVAPLALAWGPSSASQNAIGTSVLGGVVSGTLL 1003

Query: 812  SIFIAAPILLFIYDWRAKN 830
            ++       L +       
Sbjct: 1004 ALVFVPLFYLLLAQRGKAR 1022


>gi|26247628|ref|NP_753668.1| acriflavin resistance protein B [Escherichia coli CFT073]
 gi|26108030|gb|AAN80230.1|AE016760_89 Acriflavine resistance protein B [Escherichia coli CFT073]
          Length = 1005

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 71/655 (10%), Positives = 181/655 (27%), Gaps = 34/655 (5%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE-GIGV 88
             + ++P   P   I                   + +   +    ++  + L        
Sbjct: 1   MPVAQYPDVAPPT-IK--------ISATYTGASAETLENSVTQVIEQQLTGLDNLLYFSS 51

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            S       I ++F      +    +V   +Q   S+L  + ++  +     +   ++++
Sbjct: 52  TSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQQAESRLPSEVQQTGVTVEKSQSNFLLIA 111

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                   + + + +  ++    D +   E              +    DP++L      
Sbjct: 112 AVYDTTDKASSSDIADWLVSNVQDPLARVEGVGSLQVFGA-EYAMRIWLDPAKLASYSLM 170

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
            + +       N        G     ++      V  +  +                 + 
Sbjct: 171 PSDVQSAIEAQNVQVTAGKIGALPSPNTQQLTATVRAQSRL-------------QTVDQF 217

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
              I   +             +            L                +   T    
Sbjct: 218 KNIIVKSQSDGAVVRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLV 277

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
               A  +            + +      S      T      LV+ V+++ +   +  L
Sbjct: 278 KDKIAEFQRNMPQGYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATL 337

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK-NQS 447
           +   ++ + ++ T  +L+L G ++   ++  +VL IGL VD  I+V E +    R     
Sbjct: 338 IPALAVPVVLLGTFGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENVERIMRDEGLP 397

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAI 504
              + +         +    +      + + FFGG      R F+IT+  ++L+S+  A+
Sbjct: 398 AREATEKSMGEISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSITIISAMLLSVVVAL 457

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIP----DCIAIQFMRARFWGVGISILFSICS 560
           ++  A+   ++++              F           + ++  R        +     
Sbjct: 458 TLTPALCGSVLQHVPPHKKGFFGAFNRFYRRTEDKYQRGVIYVLRRAARTMGLYVVLGGG 517

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
           + L+        +  +   ++ V    P   +  R+   + QI D    N     + +  
Sbjct: 518 MALMMWKLPGSFLPTEDQGEIMVQYTLPAGATAARTAEVNRQIVDWFLINEKANTDVIFT 577

Query: 621 LQ--YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +      G           +K         +T Q   +   K    +    +  +
Sbjct: 578 VDGFSFSGSGQNTGMAFVSLKNWSQRKGAENTAQAIALRATKELGTIRDATVFAM 632



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 231 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 290

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 291 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 350

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 351 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 408

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 409 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 459



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  +                 G      ++G   + ++ +   G S              
Sbjct: 756 VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 815

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                        +     S + +    V +++  + +     +   W      I  + L
Sbjct: 816 LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 872

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 873 GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 929

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 930 RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 989

Query: 820 LLFIYD 825
            + +  
Sbjct: 990 FVLVKR 995


>gi|282853884|ref|ZP_06263221.1| protein-export membrane protein SecF [Propionibacterium acnes J139]
 gi|282583337|gb|EFB88717.1| protein-export membrane protein SecF [Propionibacterium acnes J139]
          Length = 391

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 11/314 (3%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           S          L    I+  F++ R     I+    I S   L   GLN GI+FKGG+Q 
Sbjct: 23  SKKRKHNFTHALYTGEISYGFIQRRKIWYTITAAVIIISFIGLLIRGLNLGIEFKGGVQF 82

Query: 582 GVLANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              A+     +  VR ++ S    D+         +  V++Q +  +S   T+V E + K
Sbjct: 83  RAPAHVATSTIDEVRKSVLSSGAPDMDATEVVSLGSDAVQVQTRALNSDETTKVQEAIAK 142

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                   ++      VG +   ++  K I  +++  + +++ IW  F+ W  ++ A+  
Sbjct: 143 A---TGTKTSSVTYSKVGSQWGEQITGKAIKALVVFLVLVMLQIWAYFRHWKMSIAALVA 199

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFR 758
           L+ D+  T+G +AL G   + + V  VLT++GYS+ D VVV+D++R+N++       +F 
Sbjct: 200 LLHDLIVTIGIYALVGFTVSPSTVIGVLTILGYSLYDTVVVFDKVRENVQDIDKRDYTFA 259

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSI 813
           +  ++++N+ L RS+ T++   + V  +      V G   +    + +  G++V A SSI
Sbjct: 260 EGANRAVNQVLVRSINTTIVGVLPVAALLFAGAFVLGSGPLEDLGLALFVGMIVGAYSSI 319

Query: 814 FIAAPILLFIYDWR 827
           FIA P+   + +  
Sbjct: 320 FIATPVFTQLREHE 333


>gi|85711868|ref|ZP_01042923.1| RND family efflux transporter [Idiomarina baltica OS145]
 gi|85694265|gb|EAQ32208.1| RND family efflux transporter [Idiomarina baltica OS145]
          Length = 1032

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 70/629 (11%), Positives = 183/629 (29%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   G++           L  FP       +++  D  G         
Sbjct: 9   KRPVFATVVNVLLIIFGIVA-----FTMLPLREFPDIDAP-VVTISTDYPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E  S ++         R   + I++ F  SR  +  ++ V   +  
Sbjct: 55  SAEVVETQVTQLIEERISGIEGIKNISSRSRPGNSSISIEFTLSRDIDAASNDVRERVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +   +  E ++V      +      +E +    R  +D++ + +   
Sbjct: 115 ALDNLPEESDPPEVSKASSDETTVVWYNLRSES--MSILELTDYAERYIVDRLAVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D   +     T   +       N                     
Sbjct: 173 RVRIGGDRRYAMRVWLDRDAMAARQITVTDIVSRLREENIELPA---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +VE +    +   A            +                 +           
Sbjct: 217 ---GEVESTEREFSVRMARAYLSEDDFRNLVIRQGDDGYLVRLGEVARVELGAEDDKTDF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +++ +    +E       +L               +     GS   
Sbjct: 274 RGNGVNMVGIGIIKQSKANTLSVVENVREEMEVLEKTLPETMYLATSYDSSIFIKGSIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +   +  ++   ++ + +I +  +L  LG ++ L ++  +V
Sbjct: 334 VYNTLLIAMALVVVVIYLFLGNIRATIIPALTVPVAIIASYIVLFSLGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD +I+V E I     + +    +   G       +  + +  +   V L F  
Sbjct: 394 LAIGLVVDDSIVVLENIYRRVEEGEPPLLAAYRGAREVGFAVIATTLVLISVFVPLAFLE 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-----IDINPLSRFFL 533
           G   +    FA+ +  ++  S   A+++   +   I+  K+  S      D         
Sbjct: 454 GNIGKLFTEFALAIAAAVAFSSIAALTLTPMLGSKILHKKERTSKFGIAFDRFFKWLEAK 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     R     + + +   +    + F        + +G   + +          
Sbjct: 514 YTTVLEGSIKRPSLALILVVLSGVVSYGAMQFVPQEFAPPEDRGTFYISIKGAEGASFES 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
              +++ ++   + + + +     +VR  
Sbjct: 574 NSRHMDEIEQILLPYIDQNKIDRVIVRAP 602



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 64/159 (40%), Gaps = 7/159 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ I   + +  +F+ +   L  +  + + I        L G   N+ +   ++ LIG 
Sbjct: 856  GLALIITFLVLAAQFESFIHPLVIMLAVPIAIVGAFIGLYLSGNSINIYSQIGIVMLIGL 915

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +      +L    +SFRD +  +  + L   V T+    +S +P+ +    
Sbjct: 916  AAKNGILIVEFAN---QLRDAGLSFRDAVITASRQRLRPIVMTAFTTLMSSVPLILGTGP 972

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            G          +  G+ ++A  ++F+   + + +     
Sbjct: 973  GSESRMVIGTVIFAGVALSAFLTLFVIPALYMLMAQKTQ 1011



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 72/210 (34%), Gaps = 4/210 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +     F+        +  ++    ++++    +    + + + +P 
Sbjct: 254 VRLGEVARVELGAEDDKTDFRGNGVNMVGIGIIKQSKANTLSVVENVREEMEVLEKTLPE 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +    T        +  I +    ++I+   +++ I++        +    T+ + I  +
Sbjct: 314 TMYLATSYDSSIFIKGSIDEVYNTLLIAMALVVVVIYLFLGNIRATIIPALTVPVAIIAS 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   NL  + A++  IG  V+D +VV + +    +             +   E
Sbjct: 374 YIVLFSLGFSINLLTLLALVLAIGLVVDDSIVVLENI---YRRVEEGEPPLLAAYRGARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                + T++      +P+A   G++   F
Sbjct: 431 VGFAVIATTLVLISVFVPLAFLEGNIGKLF 460


>gi|74317435|ref|YP_315175.1| hydrophobe/amphiphile efflux-1 HAE1 [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056930|gb|AAZ97370.1| Hydrophobe/amphiphile efflux-1 HAE1 [Thiobacillus denitrificans
           ATCC 25259]
          Length = 1054

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 65/695 (9%), Positives = 176/695 (25%), Gaps = 51/695 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        + ++P+  P              +       
Sbjct: 8   RPIFAWVIAIVIMLAGALSIL-----TLPVSQYPAIAPPTV---------AINASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L              +  +TL+F      +    +    LQ 
Sbjct: 54  AKTVEDSVTQVIEQKLTGLDNLLYMSSQSDSYGRATVTLTFDAGTDPDIAQVQTQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L +  ++  +         +++             + +  +     + +       
Sbjct: 114 ALPLLPLAVQQQGVQVVKSTRNFLMIIGFVSKDGSMSRTDLADFLNSTVQEPLSRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L +   T   +       NN       G        G   
Sbjct: 174 EVQVFGAQ-YAMRIWVDPGKLNKYRLTPGDVEEAIREQNNQVSAGQLGGTPAVPGQGFTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 +           
Sbjct: 233 SITAQSRL-------------QTVDEFERILLRSSAQGGEVRLKDVARVEIGAENYGIVG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +       A  +   T E        ++A        ++          S   
Sbjct: 280 RFNGQPASGIGIKLAAGANALDTAEAVKARIEQMKAYFPAGLETVIPYDTTPFVQISIMN 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +++  G ++   ++ G+V
Sbjct: 340 VVYTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVMAAFGFSINTLTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMSEEGLSPKEATRKSMGQITGALVGIGLVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSI 523
           GG      R F+IT+  ++ +S+  AI    A+   +                       
Sbjct: 460 GGSTGVIYRQFSITIVAAMALSVLVAIIFTPALCATMLKPVEKGHGHGEGGWFSGFFGWF 519

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R+  +      +  + ++            + +G +   V
Sbjct: 520 NRMFARNTERYESAVGKILGRSLRFLAIYIAIVGVLALLFFRMPTAFLPEEDQGVMFTQV 579

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +             L+ ++   +       + N              Q + + +    + 
Sbjct: 580 ILPAGASQERTVEVLKKVEHQYLEN----EKGNVRSIFAAAGFSFAGQGQNMGIGFVNLE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                   +         +     +    ++ + +
Sbjct: 636 PWDQRHEPEQDVNSIAGRAMGAFSQIKEAMVFAFV 670



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 84/235 (35%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   I  +      + +        +++     ++   +++    P 
Sbjct: 260 VRLKDVARVEIGAENYGIVGRFNGQPASGIGIKLAAGANALDTAEAVKARIEQMKAYFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  +I + I + + +++  + +   L     + + +  T
Sbjct: 320 GLETVIPYDTTPFVQISIMNVVYTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A FG   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+ +
Sbjct: 380 FGVMAAFGFSINTLTMFGLVLAIGLLVDDAIVVVENV--ERIMSEEGLSPKEATRKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V   +      +PMA +GGS       F+I +   + ++   +I     +
Sbjct: 438 ITGALVGIGLVLSAVFVPMAFFGGSTGVIYRQFSITIVAAMALSVLVAIIFTPAL 492



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 70/227 (30%), Gaps = 8/227 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + F+G+ +  +  Q  P  S                         T     +   +    
Sbjct: 819  ERFNGQPSVELLGQAAPSLSSGDAMAAAEEIIAKLPAGIGYEWTGTSFEERRSGSQAPAL 878

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +++  + +     +   W      +  + L +   +   +  G+  ++    A+L 
Sbjct: 879  YALSLLVVFLCLA---ALYESWSVPFAVMLVVPLGVFGAMLAASGLGLSNDVYFQVALLA 935

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             IG S  + +++ +  +  M+             +++   L   + TS+A    VLP+A+
Sbjct: 936  TIGLSSKNAILIVEFAKAQMEKE--GRDLISATREAVRMRLRPILMTSLAFGFGVLPLAL 993

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G     +    +  G +      IF      + I        R
Sbjct: 994  ASGAGSGAQNAVGTGVLGGTIAGTLLGIFFIPLFYVVIKRVFKDKPR 1040


>gi|160884618|ref|ZP_02065621.1| hypothetical protein BACOVA_02607 [Bacteroides ovatus ATCC 8483]
 gi|156110357|gb|EDO12102.1| hypothetical protein BACOVA_02607 [Bacteroides ovatus ATCC 8483]
          Length = 1049

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 76/683 (11%), Positives = 177/683 (25%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTNIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSIAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSQDSVYNSLYLTNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-S 236
                          +    DP  +R    +  ++       N        G    +D +
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPQQVYQSIQSQNVEVSAGYIGQPIGQDNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  +                 +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRL-------------KSPEQFGNIIIRREQDGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAESFPSGVAYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I T A++++ G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVMAVFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T+++    G   + FA+T+  S ++S F ++++  A+    +   K  +  I       
Sbjct: 458 PTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSNFFIYKGFNKA 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R          L  I  +  +         +  G     V   
Sbjct: 518 YDKTQGVYDKIVKWLLQRPGMALASYGALTVIALLLFMHWPSTFIPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  E +     S+                 G+         ++K       
Sbjct: 578 PAASLERTQAVGEKINGILDSYPEVKNYIGISGFSIMGGGEQSNSATYFVVLKNWSERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+  
Sbjct: 638 KEHTAAAIVNRFNGEAYMTIQAA 660



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/541 (8%), Positives = 136/541 (25%), Gaps = 43/541 (7%)

Query: 329  GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                +         K     +      +       G      G + ++  ++ ++     
Sbjct: 502  KSKPSNFFIYKGFNKAYDKTQGVYDKIVKWLLQRPGMALASYGALTVIALLLFMHWPSTF 561

Query: 389  VADFSIFLNVILTL------------------ALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            + D      + +                     +L           I+G  +  G    +
Sbjct: 562  IPDEDDGYFIAVVQLPPAASLERTQAVGEKINGILDSYPEVKNYIGISGFSIMGGGEQSN 621

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +      ++  + +      +  +                + A V     G GA  G  +
Sbjct: 622  SATYFVVLKNWSERKGKEHTAAAIVNRFNGEAYMTIQAAEVFAMVPPAIPGLGASGGLQL 681

Query: 491  ---------TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
                        +   I+   A    +  +  +    +              +       
Sbjct: 682  QLEDRRNLGPTEMQQAINALLASYHSKPALASVSSQYQANVPQYFLNIDRDKVQFMGIAL 741

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR------ 595
                   G  +   +    +     + +      +    +  +    V  S         
Sbjct: 742  NDVFSTLGYYMGAAYVNDFVEFGRIYQVKIEARDQAQRVIDDVLKLSVPNSAGEMVPFSS 801

Query: 596  -SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             + +E     D   +        L         +    + +E + K+           + 
Sbjct: 802  FTKVEEQLGQDQINRYNMYSTASLTCNVAPGSSTGQAIQEVEALFKEQLGDEFGYEWTSV 861

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +         I+ +I++    L+       W   + A+  L + +   +    + 
Sbjct: 862  AYQETQAGNTTTIVLIMALIVAF---LVLAAQYESWTSPVAAVIGLPVALLGAMIGCLIM 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+  S  + +++ +  R          S R+   ++ +  L   + 
Sbjct: 919  GTPVSIYTQIGIILLVALSAKNGILIVEFARDFRAE---GNSIREAAFEAGHVRLRPILM 975

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS A  + V+P+      G     +    + FG+ +    +         F+   + + +
Sbjct: 976  TSFAFVLGVMPLLFATGAGAQSRIALGAAVVFGMAMNTLLATIYIPNFYEFMQKLQERFS 1035

Query: 832  R 832
            +
Sbjct: 1036 K 1036



 Score = 43.5 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 78/245 (31%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S  N        +  Q           V   +++           
Sbjct: 267 DIARIDLGSASYSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAESFPSGVAY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  T    
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A+FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AVFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSN 507


>gi|149177690|ref|ZP_01856291.1| AcrB/AcrD/AcrF family protein [Planctomyces maris DSM 8797]
 gi|148843508|gb|EDL57870.1| AcrB/AcrD/AcrF family protein [Planctomyces maris DSM 8797]
          Length = 1051

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 86/650 (13%), Positives = 192/650 (29%), Gaps = 35/650 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I  +G L      LP   ++ FP   P                     + 
Sbjct: 10  PIFASVVSIVIAIVGALA-----LPLLPVELFPDITPPTV---------AVTATYRGADA 55

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGV 122
           + V   +    +E  + ++       S     N  +T++F      +     V   +   
Sbjct: 56  EVVADTVATPIEEQVNGVENMLYMSSSSTSDGNMTLTVTFDVGTDLDMANVLVQNRVAIA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N  L  D K+  + T  +     ++   N        +  S        D++        
Sbjct: 116 NPSLPEDVKREGVTTQKKSTNMTLVVALNSPDETFDGLYLSNYATININDELARISGVSD 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
               + +   +    DP+++     TT  +       N        G          Q  
Sbjct: 176 VNVVNALDFGMRIWMDPNQMDTRNITTTDVVDALRQQNVQVAAGQIGQEPSPKDQDFQLT 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +S                +    I       +         +            
Sbjct: 236 VTTLGRLSSAD-------------EFEDIIVKTGQEGQITRIKDIGRVELGAQSYSGYSQ 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L                +     E +  +   L           V   +      S    
Sbjct: 283 LDGKPAALIAIYQLPGANALDVAEQSRKVLERLSKDFPKGLEYSVPYDSTEFVTASIDEV 342

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T  +   LV IV+F+ +   +  L+   +I ++++ T+A++  +G T+   S+ GIVL
Sbjct: 343 VKTLIVALVLVFIVIFVFLQDFRATLIPAVTIPVSLLGTMAVMLAMGYTINTLSLFGIVL 402

Query: 423 GIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNIT---ALIATVVLF 478
            IG+ VD  I+V E +    + +  S   + ++        +  + +      + T+VL 
Sbjct: 403 VIGIVVDDAIVVVENVTRILDTEKCSPKKATEIAMMEITGPVIATTLVLLAVFVPTMVLP 462

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF-IIRYKKMKSIDINPLSRFFLIPDC 537
              G   R FA+T+ ++ L S   A+++  AM  F +   ++ +       +  F     
Sbjct: 463 GITGRLYRQFALTISIATLFSSVCALTLSPAMCGFMLRETQERRGFFFRGFNWCFDRSQN 522

Query: 538 IAIQFMR--ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             ++F++   R   + I  L +I +   +    +  G           +  +  D + + 
Sbjct: 523 FYMRFVKSFVRHAFIMIIPLVAIFAATGVGFVSVPGGFLPNEDQGYIFINTQLPDGASLN 582

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              E     +    +     + +    +   ++   +     +       
Sbjct: 583 RTREVQNRINKISADLPSATHVITMGGFSILNNSNASNYSTTIIALEDWS 632



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 91/250 (36%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +   +  +       Q      Q        +   Q    +++        V +++++  
Sbjct: 260 QITRIKDIGRVELGAQSYSGYSQLDGKPAALIAIYQLPGANALDVAEQSRKVLERLSKDF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P     +      +     I + +  +I++ + + I I++    +   L    T+ + + 
Sbjct: 320 PKGLEYSVPYDSTEFVTASIDEVVKTLIVALVLVFIVIFVFLQDFRATLIPAVTIPVSLL 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T+      G   N  ++  ++ +IG  V+D +VV + +     L T   S +   + ++
Sbjct: 380 GTMAVMLAMGYTINTLSLFGIVLVIGIVVDDAIVVVENV--TRILDTEKCSPKKATEIAM 437

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL-L 821
            E  G  + T++      +P  V  G        FA+ ++   + ++  ++ ++  +   
Sbjct: 438 MEITGPVIATTLVLLAVFVPTMVLPGITGRLYRQFALTISIATLFSSVCALTLSPAMCGF 497

Query: 822 FIYDWRAKNA 831
            + + + +  
Sbjct: 498 MLRETQERRG 507


>gi|166712192|ref|ZP_02243399.1| RND superfamily protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 1041

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 84/687 (12%), Positives = 179/687 (26%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL      L    ++++P   P               + +    
Sbjct: 8   RPNFAWVVAIFISLAGLLA-----LRTLPVEKYPEVAPP-------------QISIMATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +       +   L           S      +IT++F            V   
Sbjct: 50  PGASAQVVNDAVTSVIEQELNGARDMLYYDSSSSNGSAQITITFQPGTDPSIAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIGI 176
           ++   S+L     +  L         ++L              +  +    R   D+I  
Sbjct: 110 IRQSESRLPAAVTQLGLQVEQTTAGFLMLYSLVYKDATAAQDVVRLNDYAARVVNDEIRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    D   LR    +   ++      N        G R     
Sbjct: 170 VPGVGRVQFFGA-EAAMRVWVDIQALRGYGLSIVDVNNAIRAQNLQVAAGSLGERPGAQD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +                         +   +             +   L  
Sbjct: 229 QELTTTLVVRGL-------------MESPQDFGQIVLRAQANGAVVHLSDVAKLELGLEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T+         L           V   +     
Sbjct: 276 YQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRKRLQELSQSFPADIAYSVPFDSSTFVN 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV +V+F+ +   ++ L+    + + ++ T A++ LLG ++ + S
Sbjct: 336 VAIKKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGTFAVMKLLGFSVNMMS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +      +  S   +     ++    I    +      +
Sbjct: 396 MFAMVLAIGILVDDAIVVVENVERLMADEGLSPRDASMKAMTQVGGAIVGITLVLTAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L F  G      R F+  + +SIL S F A+++  A+    +               F 
Sbjct: 456 PLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPALCATCLAPIDGHQEKKGFFGWFD 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL- 591
              + +  +F R     V  +    +  + LL   GL Y    +  +         VD+ 
Sbjct: 516 RHFNALTSRFDRLNHRLVHRAGRCMLVYVVLLGVLGLAYVRLPEAFVPQEDEGYMIVDMQ 575

Query: 592 ----SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +       + Q  +         ++  +   +    S A   +     +  +E   
Sbjct: 576 LPPGASYSRTRAAGQQVNDYLAARPSMQDVTLVYGFSFSGSGANAAMAFPSLRDWSERGD 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             +  N           +    I+ V+
Sbjct: 636 SESAANEVAAANVALGRISDATIMAVM 662



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 90/235 (38%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V      L+      Q   G            G++VA    +    +++++  P 
Sbjct: 261 VHLSDVAKLELGLENYQFDVQENGGPAAGAAVQLAPGGNAVATVAAVRKRLQELSQSFPA 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            I+K +  ++ +   + + +++  +   + L     + + +  T
Sbjct: 321 DIAYSVPFDSSTFVNVAIKKVLHTLLEAMALVFLVMFVFLQNIRYTLIPAIVVPVCLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N+ ++ A++  IG  V+D +VV + +     +    +S RD   K++ +
Sbjct: 381 FAVMKLLGFSVNMMSMFAMVLAIGILVDDAIVVVENV--ERLMADEGLSPRDASMKAMTQ 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LP+A   GSV      F+  +A  I+ +   ++ +   +
Sbjct: 439 VGGAIVGITLVLTAVFLPLAFMSGSVGVIYRQFSAVLAVSILFSGFLALTMTPAL 493



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/138 (13%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + +          + G+  ++     ++T+IG +  + +++ +  ++  
Sbjct: 888  SWAIPFSVMLIVPIGAVGATAAVWVAGLSNDVYFKVGLITIIGLAAKNAILIVEFAKE-- 945

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             L+       +   ++        V TS+A  + V+P+ +  G+   S    +  G++  
Sbjct: 946  -LHARGARVPEAAMQAARLRFRPIVMTSLAFILGVIPLVIARGAGAASQN-ALGTGVIGG 1003

Query: 809  AS--SSI-FIAAPILLFI 823
                S++  +  PI    
Sbjct: 1004 MLAASTLGVVFTPIFFTW 1021


>gi|319427315|gb|ADV55389.1| protein-export membrane protein SecF [Shewanella putrefaciens 200]
          Length = 298

 Score =  180 bits (456), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 147/280 (52%), Gaps = 9/280 (3%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R+    ISI   + S+ ++   G N+G+DF GG+   V  +R +  S ++  L +    
Sbjct: 13  WRYISSAISIFLMLASLTIIGVKGFNWGLDFTGGVVTEVQLDRKITSSELQPLLNAAYQQ 72

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           ++S  +      +++R         A T    +   +    +    + NT IVGP++ +E
Sbjct: 73  EVSVVSASEPGRWVLRY--------ADTAQSNVDIAQTLAPLGEIQVLNTSIVGPQVGKE 124

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L  +G + ++++ + +L Y+  RF+W  A GA+  L+ D+   L FFAL  +EFNLT +A
Sbjct: 125 LAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFALTQMEFNLTVLA 184

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           AVL ++GYS+ND +++ DR+R+ +      ++ +++ +++I  T  R++ TS    ++V 
Sbjct: 185 AVLAILGYSLNDSIIIADRIRELLIAKPK-LAIQEINNQAIVATFSRTMVTSGTTLMTVG 243

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            + + GG  +  F+I M  GI+    SSI +   +   + 
Sbjct: 244 ALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLG 283


>gi|83646510|ref|YP_434945.1| cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
 gi|83634553|gb|ABC30520.1| Cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
          Length = 1056

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 71/687 (10%), Positives = 175/687 (25%), Gaps = 46/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +   ++   G L  +        + ++P   P   +             +    
Sbjct: 22  RPVFSWVAAIVVMLAGALGLM-----SMPVSQYPDIAPPTIM-------------ISASY 63

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   LK           S     +++ L+F      +    +V  
Sbjct: 64  PGASAEVVENSVTQILEQELKGLDNLMYFSSRSSSSGASEVMLTFQHGTDADIAQVQVQN 123

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                  +L    ++  L     +   +++             + S  +     D +   
Sbjct: 124 KAAQAAGRLPAPVQQQGLTVNKSQNNFLMILGFYDASDRLSDTDISDWLAGSLQDPLSRV 183

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L         ++      N        G    R   
Sbjct: 184 DGVGAVQNFGSP-YAMRIWLDPHKLNSFRLMPKDVTDAIAAQNTEVSVGELGALPARPGQ 242

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     ++                +    I   +             +       
Sbjct: 243 QLNVTVTSMSRLT-------------SPQQFRDIIIKTDADGAVVRLGDVARVELGAEDY 289

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E      A LR    P       E        
Sbjct: 290 GGTTKLNGHPASGLAVMLAPGANALQVAEAVKQKVAQLRGVFPPGVKVAFPEDTTRFVKL 349

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F  +   +  L+   ++ + ++ T  +L+  G ++   S+
Sbjct: 350 SIHSVLQTLLEAVALVVLVMFAFLQNWRATLIPAITVPVVLLGTFGVLAAAGYSVNTLSL 409

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      R    +           + 
Sbjct: 410 FAMVLAIGLLVDDAIVVVENVERIMREEGLDARAATLKSMDRITGVLIGVAAALAAVFLP 469

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPL 528
           + FF G      R F++T+  ++ +S   AI +  A+ +  +R+ +       + +    
Sbjct: 470 MAFFSGSVGVIYRQFSVTLVAAMALSAVAAICLTPALCVKFLRHGEASAGGFNAFNRGFA 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +     R   +     +   + ++            + +G + +       
Sbjct: 530 RFQQRYVGGLRFMLSRPVRFSAAYILAVGLMALVYWRLPTAFIPDEDQGTVLVQFNLPAG 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                     + ++   +  +  + E  +++      G           +K       P 
Sbjct: 590 ATYDRAAKVAQEIERYFLEQEKANVETVYILSGFSFDGAGQNAGMGFVALKDWSQREGPE 649

Query: 649 STIQNTEIVGPKISRELIRKGIVGVII 675
           ++ Q       +    L       +++
Sbjct: 650 NSAQAIADRATEAFSRLRDAQAYSMVL 676



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 90/241 (37%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    + +      + L  +     +++     ++    ++  + P 
Sbjct: 274 VRLGDVARVELGAEDYGGTTKLNGHPASGLAVMLAPGANALQVAEAVKQKVAQLRGVFPP 333

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  I   +  ++ +   +++ ++   + W   L    T+ + +  T
Sbjct: 334 GVKVAFPEDTTRFVKLSIHSVLQTLLEAVALVVLVMFAFLQNWRATLIPAITVPVVLLGT 393

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A  G   N  ++ A++  IG  V+D +VV + +     +    +  R    KS++ 
Sbjct: 394 FGVLAAAGYSVNTLSLFAMVLAIGLLVDDAIVVVENV--ERIMREEGLDARAATLKSMDR 451

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  + A     LPMA + G   VI   F++ +   + ++A ++I +   + +   
Sbjct: 452 ITGVLIGVAAALAAVFLPMAFFSGSVGVIYRQFSVTLVAAMALSAVAAICLTPALCVKFL 511

Query: 825 D 825
            
Sbjct: 512 R 512



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 67/194 (34%), Gaps = 7/194 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694
            E + +   +   L              +    +  +  + S + + + +   ++ W    
Sbjct: 846  EAMAQVEKQAASLPGTNFEWSGLSYQDKLSSGQAPLLYLASILFVFLCLAALYESWTIPC 905

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                 + L +   L      G+  ++     +LT IG S  + +++ +   +        
Sbjct: 906  AVAPAIPLGVLGALLAVYWRGLPNDIYFQVGLLTTIGLSAKNAILIVE-FAE--AAVRQG 962

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            ++    + +     L   + TS+A    V P+A+    G +   +    +  G++ A + 
Sbjct: 963  MAPMTAVVEGARLRLRPILMTSLAFGAGVAPLALSTGPGSASQNAIGTSVLGGVLAATAL 1022

Query: 812  SIFIAAPILLFIYD 825
            +IF      L++  
Sbjct: 1023 AIFFVPLFYLWVKG 1036


>gi|170722111|ref|YP_001749799.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           putida W619]
 gi|169760114|gb|ACA73430.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida W619]
          Length = 1041

 Score =  180 bits (456), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 85/687 (12%), Positives = 181/687 (26%), Gaps = 47/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P+  P               + +    
Sbjct: 8   RPVFAWVVALFILLAGALAI-----PQLPVAQYPNVAPP-------------QVEIYAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  + +     +   L                   IT +F      +     V   
Sbjct: 50  PGASAATMDESVVSLIEQELNGADNLLYFESQSSLGSATITATFEPGTHPDLAQVDVQNR 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V S+L     +  L         ++L     +         S  + R  +++I   +
Sbjct: 110 LKVVESRLPRPVTQQGLQVEKVSTGFLLLGTLTSEDGSLDETALSDILARNVMNEIRRLK 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    DP +L     T   ++      N        G    R +  
Sbjct: 170 GVGKAQLYGS-ERAMRIWIDPGKLIGFSLTPNDVANAIAAQNAQVAPGSIGDLPARSTQE 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K ++S                +    +                 +        
Sbjct: 229 ITANVVVKGQLS-------------TPEEFSAIVLRANPDGSTVTIGDVARVEIGAQEYQ 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G  L     +          +   T          L           +          S
Sbjct: 276 YGTRLNGKPASAFSVQLAPGANAMETATLVRAKMQELSVYFPEGVKYDIPYDTSPFVKVS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV  V+F+ +   ++ L+    + + ++ T A++  LG ++ + ++ 
Sbjct: 336 IQQVISTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALMGTFAVMLALGFSVNVLTLF 395

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +      +      +    I    +  +   + +
Sbjct: 396 GMVLAIGILVDDAIVVVENVERIMAEEGLPPKEATRKAMGQISGAIIGITLVLVAVFLPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFF 532
            F  G      + F+++M +SIL S F A+S+  A+   +     K            F 
Sbjct: 456 AFMKGSVGVIYQQFSLSMAVSILFSAFLALSLTPALCATLLTPLPKGEHHESKGFFGWFN 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG-----IDFKGGIQLGVLANR 587
              + ++  + R     +  S  + +    LL   G  +                +   +
Sbjct: 516 RNFERMSSGYERWVVQALKRSGRYLLVYGVLLAVLGYGFSQLPTAFLPTEDQGYTITDIQ 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +      +     +       G  N  V L +    S     +     K  +E   
Sbjct: 576 LPPGASRMRTEQVAAQIEAHNAQEPGVGNTTVILGFSFSGSGQNAALTFTTLKDWSERGA 635

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             + Q+           +       V+
Sbjct: 636 DDSAQSIADRANAAFSRIRDAVAFSVL 662



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q      +      +          +++    ++    ++++   
Sbjct: 257 STVTIGDVARVEIGAQEYQYGTRLNGKPASAFSVQLAPGANAMETATLVRAKMQELSVYF 316

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I++ I  +  + + +   +++  +   + L     + + + 
Sbjct: 317 PEGVKYDIPYDTSPFVKVSIQQVISTLFEAMLLVFAVMFLFLQNLRYTLIPTLVVPVALM 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 377 GTFAVMLALGFSVNVLTLFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPKEATRKAM 434

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  +  ++      LPMA   G   VI   F++ MA  I+ +A  ++ +   +
Sbjct: 435 GQISGAIIGITLVLVAVFLPMAFMKGSVGVIYQQFSLSMAVSILFSAFLALSLTPAL 491



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 62/146 (42%), Gaps = 5/146 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W      +  + L +   +    L G+  ++     +
Sbjct: 866  QAPLLMALSLLVVFLCLAALYESWSIPTAVLLVVPLGVLGAVLAVTLRGMPNDVFFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG S  + +++ +  +    L    +   D   ++    L   V TS+A  + V+P+
Sbjct: 926  ITLIGLSAKNAILIIEFAK---SLVDQGVDAVDAAVQAARLRLRPIVMTSLAFILGVVPL 982

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSS 812
            A+  G+   S    +  G++    S+
Sbjct: 983  AIATGASSASQQ-AIGTGVIGGMLSA 1007


>gi|320011895|gb|ADW06745.1| protein-export membrane protein SecD [Streptomyces flavogriseus
           ATCC 33331]
          Length = 582

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 108/542 (19%), Positives = 206/542 (38%), Gaps = 43/542 (7%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD---- 61
             +IL +M+   G +    +  P+                LG+DL GG+ + L+      
Sbjct: 21  LALILIAMVALTGGMFLSGHTTPR----------------LGIDLAGGTSITLKAKSQPG 64

Query: 62  -EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
             +      +      +   +   G+    ++    + I ++           ++V    
Sbjct: 65  KPEAINETNMNTAVSIIERRVNGLGVSEAEVQTQGASNIIVNIPKGTNSAQAREQVGTTA 124

Query: 120 QGVNSKL---------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
           Q     +                    + +   +     ++ +         S     Q 
Sbjct: 125 QLYFRPVLTVAGGAPTPEGSASPSATGSGKPSATPSAKASDPETASDPKATPSDGATTQG 184

Query: 171 IDQIGISESTIQRLGSHRILIQLPGE----QDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
               G  +       S       P         +   Q   T    +             
Sbjct: 185 RAVTGALKKDATPTPSGASESDAPAATETPDAATAALQKKFTELDCTDKAARAAAGDGVK 244

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                    S+G+   +    E+SG  ++ A A FD +    +V + F + G+++F  +T
Sbjct: 245 PEDPTVACSSEGDAKYLLGPAEVSGTDVDDAKAQFDQQRGIWLVSMEFTDKGSKKFQTIT 304

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSG----KAQISGNFTIETAGILAAMLRAGSLPI 342
           +    +          L   V++    +      A+ISG+FT ++A  LA +L  G+LP+
Sbjct: 305 KKLSTQQSPANQFAISLDGEVVSAPQVNETLSGSAEISGSFTQQSAEDLANVLSYGALPL 364

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
             +      V A LG + +  G  A   GL L+V++++  Y    L+A  S+  + ILT 
Sbjct: 365 SFSEDTVTTVTAALGGEQLEAGLIAGAIGLALVVIYLVAYYRGLALIALLSLVASGILTY 424

Query: 403 ALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR 458
            +++LLG      L LP++ G ++ IG+  DS I+  ERIR+E R+ +++  +++  + R
Sbjct: 425 TIMALLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERIRDEIREGRTLRPAVERAWPR 484

Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           A  TI  S+  + +A  VLF    G V+GFA T+GL+ L+ +       + +M  + R K
Sbjct: 485 ARRTILVSDFVSFLAAAVLFLVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPVMTLMARTK 544

Query: 519 KM 520
             
Sbjct: 545 FF 546



 Score =  107 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 87/266 (32%), Gaps = 10/266 (3%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              ++     KG  +   +  +        +       G++       E           
Sbjct: 285 IWLVSMEFTDKGSKKFQTITKKLSTQQSPANQFAISLDGEVVSAPQVNETLSGSAEISGS 344

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               +   +  ++      +    +      V   +  E +  G++   I    ++IY+ 
Sbjct: 345 FTQQSAEDLANVLSYGALPL--SFSEDTVTTVTAALGGEQLEAGLIAGAIGLALVVIYLV 402

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVY 741
             ++   AL A+ +L+     T    AL G       NL AV   +  IG + +  +V +
Sbjct: 403 AYYR-GLALIALLSLVASGILTYTIMALLGPAIGFALNLPAVCGAIVAIGITADSFIVYF 461

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      + R  ++++        + +   +F++   + +     +  FA  +
Sbjct: 462 ERIRDEIRE---GRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFLVTVGKVQGFAFTL 518

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWR 827
               ++          P++  +   +
Sbjct: 519 GLTTLLDVVVVFLFTKPVMTLMARTK 544


>gi|291514046|emb|CBK63256.1| The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile
           Efflux-1 (HAE1) Family [Alistipes shahii WAL 8301]
          Length = 1032

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 75/618 (12%), Positives = 170/618 (27%), Gaps = 48/618 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +GLL      L    +D++P  +P               + +    
Sbjct: 9   RPVFSTVLSVVIVIVGLL-----GLVMLPVDQYPRIVPPV-------------VKISASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   L    G+         +     T++F      +  A ++  
Sbjct: 51  PGASAQTVTQAVATPIEQELNGTPGMLYMESTSSNSGGFSATVTFDIDTDADLAAVEIQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   ++L  +  +N +    +    ++      +      I  S       +D +   
Sbjct: 111 RVKQAEARLPAEVIQNGISVEKQASSRLMTITLLSNDPKFDEIYLSNYATLNVLDMLRRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P RL  L  T   +       N      + G + + D D
Sbjct: 171 KGVGSVSNVGSRYYAMQIWVQPDRLANLGLTVQDLQKALKDQNRESAAGVLGQQPITDLD 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +S                +    +                 I    +  
Sbjct: 231 -VTIPITARGRLS-------------SVGEFEEIVVRANPDGSLIRLRDVARISLEASSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +          +     +      +       +           +          
Sbjct: 277 STESGINGGNAAVMNINMLPGANAMEVARSVRETMEEISRSFPEGISYKIPFDMTSYISQ 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T  ++   G +L + ++
Sbjct: 337 SIREVYHTLFEALLLVILVVFLSLQNWRATLIPTIAVPISLIGTFGVMLAFGFSLNMMTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIA 473
            G++L IG+ VD  I+V E +    N +  S + +     S   S I  ++       + 
Sbjct: 397 LGLILAIGIVVDDAIVVVEAVERIMNEEGLSPYEATKKAMSGLGSAIIATSLVLCAVFVP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   R F IT+ +S+LIS F A+++  A+   I+R    K  +         
Sbjct: 457 VSFLSGITGQLYRQFTITIAVSVLISTFVALTLSPALCALILRPDSGKRKNRLFRRINIW 516

Query: 534 IPDCIAIQFMRAR-------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           +           R              +                   + +G   + +   
Sbjct: 517 LGSGTKFYERMIRGGVRHSKRMLALFGLTLVALWALNKIVPQSFMPQEDQGYFTVELELP 576

Query: 587 RPVDLSVVRSNLESLQIG 604
               L   R   +     
Sbjct: 577 EGATLERTRRVTDRAMKY 594



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 57/145 (39%), Gaps = 8/145 (5%)

Query: 689  KWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  I +L I  I   LG +A  G+E N+     ++ L+G    + +++ +  +  
Sbjct: 888  SWLIPVAVILSLPIAGIGAYLGNWA-CGLENNIYFQIGLVMLVGLVAKNAILIVEFAKDE 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +            +  +        V TS+A  + +LP+      G +        + FG
Sbjct: 947  V---EKGRDILTAVILAARLRFRPIVMTSLAFILGMLPLVFASGPGSASRQGIGTGVFFG 1003

Query: 805  IVVAASSSIFIAAPILLFIYDWRAK 829
            ++VA +  I       +++Y  + K
Sbjct: 1004 MLVAITVGIVFVPLFFVWVYKLKEK 1028



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 60/151 (39%), Gaps = 11/151 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T G    FG   N+  +  ++  IG  V+D +VV + +     
Sbjct: 363 WRATLIPTIAVPISLIGTFGVMLAFGFSLNMMTLLGLILAIGIVVDDAIVVVEAV--ERI 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFG-- 804
           +    +S  +   K+++      + TS+      +P+  + G  G +   F I       
Sbjct: 421 MNEEGLSPYEATKKAMSGLGSAIIATSLVLCAVFVPVSFLSGITGQLYRQFTIT--IAVS 478

Query: 805 IVVAASSSIFIAAPI--LLFIYDWRAKNARI 833
           ++++   ++ ++  +  L+   D   +  R+
Sbjct: 479 VLISTFVALTLSPALCALILRPDSGKRKNRL 509


>gi|196234083|ref|ZP_03132917.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chthoniobacter flavus Ellin428]
 gi|196221832|gb|EDY16368.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chthoniobacter flavus Ellin428]
          Length = 1263

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 67/528 (12%), Positives = 148/528 (28%), Gaps = 39/528 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++  +G+            + +FP  +P               + +    
Sbjct: 8   RPIVAMVISIVMTIVGI-----TAYLSLPVAQFPDIVPPE-------------IQVRTTF 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   +     +         +   K+T++F              +
Sbjct: 50  TGADALTVEQAVATPIEQQMSGVDNMNYMQSVNGNDGTLKLTVNFEVGTDVNTAQILSQM 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                +S+L  D  K  +         +++      +     I  +        D+    
Sbjct: 110 RANQASSQLPQDVNKFGVTVQKSTSSPLIMFALYSPKGTYDNIFLANYANINLSDEFTRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P +L +L  T  ++       N        G   +    
Sbjct: 170 KGIASVTVFGAGQYAMRIWVKPDQLAKLGLTIPEILNAVQAQNTVNPAGTIGGEPVPKGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  K  +                 +    +                 I       
Sbjct: 230 EFTYAVRAKGRL-------------QTAQEFGEIVVRANADGSMMRVKDVARIELGAQNY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     + A      L           V      A   
Sbjct: 277 AIVGRLNGKPAALVALYQLPGSNAVAAADGAKRTMKKLAEKFPADLGYAVCLDTTLAVTE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                + T A    LV++V+F+ +   +  L+   ++ ++++ T AL  + G T+   S+
Sbjct: 337 GMVEIQHTLAEALLLVILVVFLFLQGWRATLIPLLAVPVSLVSTFALFPMFGFTINTISL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +  +        +  + +      V  
Sbjct: 397 FGLVLAIGIVVDDAIIVVEAVEHHIDRGLSPREATLLAMKDVTGPVIATTLVLAAVFVPT 456

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            F     G   + FA+T+ +S+LIS   A+++  A+   ++R KK   
Sbjct: 457 AFIPGITGRLYQQFALTIAISVLISSINALTLSPALAAMLLRPKKKSK 504



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 63/147 (42%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L  +  + + +  T   F +FG   N  ++  ++  IG  V+D ++V + +     
Sbjct: 363 WRATLIPLLAVPVSLVSTFALFPMFGFTINTISLFGLVLAIGIVVDDAIIVVEAV---EH 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                +S R+    ++ +  G  + T++      +P A   G        FA+ +A  ++
Sbjct: 420 HIDRGLSPREATLLAMKDVTGPVIATTLVLAAVFVPTAFIPGITGRLYQQFALTIAISVL 479

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           +++ +++ ++  +   +   + K+  +
Sbjct: 480 ISSINALTLSPALAAMLLRPKKKSKGL 506



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/452 (11%), Positives = 131/452 (28%), Gaps = 36/452 (7%)

Query: 404  LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC--SLDMGFSRAYS 461
            +L          ++ G+    G+    + +    ++  + +        ++    + A+S
Sbjct: 595  ILKNTPGVEYYSTVTGLNFLSGVNTTYSGIFFVSLKGWSERKAPGEQYAAIMKHVNAAFS 654

Query: 462  TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             I  +   A     +      G      +T  L        A+     M        + +
Sbjct: 655  KIPAAQAFAFSPPAI-----PGIGTSGGVTFMLQDRAGRDVAVLAENVMKYVAAARARPE 709

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
               + P+    +    I +   +     V +S          + ++ +NY   F    Q+
Sbjct: 710  LASVTPMFSPAVPQVFINVDRDKVLKQNVELSA-VYQTLQTFMGSYFVNYFNRFGRQWQV 768

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR-------------------LQ 622
             V A      S  +     ++  + +        N                         
Sbjct: 769  FVQAEGDYRTSADQVGQFFVKNKNGAMVPLSALMNSKPISGPEFTMRYNLYRSAQINATP 828

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                 S    R +E V                     +    +    I  +  S + + +
Sbjct: 829  AAGYSSGQAMRAMEEVFHATMSNEMGFAYMGMSYQEKRAQEGVSSSAIFAM--SLLFVFL 886

Query: 683  YIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
             +  +++ W      +  + + +    G       E N+ A   ++ LIG +  + +++ 
Sbjct: 887  ILAAQYESWSLPFSVLLGVPVAVCGAFGGLMCGHYENNIYAQIGLVMLIGLAAKNAILIV 946

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFA 798
            +  +     +   +S  +   +     L   + TS++  +  LP+A   G   +      
Sbjct: 947  EFAK---MKHQEGLSLVEASLEGAKLRLRPILMTSLSFILGCLPLARASGAGALSRQVMG 1003

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +  G++ A+  +IF+   +   +     + 
Sbjct: 1004 YVVIGGMMAASFIAIFLIPVLFYVVEKPHRRK 1035


>gi|15838685|ref|NP_299373.1| multidrug-efflux transporter [Xylella fastidiosa 9a5c]
 gi|9107220|gb|AAF84893.1|AE004025_3 multidrug-efflux transporter [Xylella fastidiosa 9a5c]
          Length = 1055

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 68/626 (10%), Positives = 161/626 (25%), Gaps = 48/626 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++           ++ +PS  P               + +     
Sbjct: 9   PIFAWVVAILISLAGVISIF-----NLGVESYPSIAPP-------------QVTITAHYP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                 L+      +   L            S    Q  ITL+F      +    +V   
Sbjct: 51  GASADTLEKSVTQVIEQQLTGIDHLLYFSSSSDSNGQATITLTFESGTNPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        +++     D         +  +    ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVVALRSDNPAFDRDALNDFVGTHVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    + +++       N        G      +  
Sbjct: 171 GVGSTNQFGAQ-YAMNIWLNPEKLQGYHLSASQVYNAISTQNVQFAAGSIGADPAPANQS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K   +                +    I                 +        
Sbjct: 230 FTTTVTTKGRFT-------------TPEQFENIILRTNSDGSTVQLKDVARVKIGAESYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +    +E+       L++             +      S
Sbjct: 277 IDSQYNGKPAGAFGVQLLPGANALQVVESIHTKMDELQSTFPQGVTWFTPYESTTFIKIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T A    LV +V+ + +   +  ++    I + ++ T A +  +G T+   ++ 
Sbjct: 337 IKEVVKTLAEAIVLVFLVMLIFLQNFRATIIPTLVIPVALLGTFAGMLAIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMTEEHLEPKAATQKAMTQITGAVIAISIVLTAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A++   A+            +    ++ +   
Sbjct: 457 AMQPGAAGAIYKQFALTIAMSMGFSAFLALTFTPALCASFLKSSHGQNKNWIFRTFEKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     I+    R   W    ++L  +C              + +G     V    
Sbjct: 517 EKLSHRYVRLISNTLKRTPRWTAFFAVLVVLCGFLFTRMPSSFLPEEDQGFALAIVQLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDG 613
               +        ++       + +G
Sbjct: 577 GATKTRTNEVFAQMRAVLEKMPSIEG 602



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 79/248 (31%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   I  Q                 +++     +     ++    P 
Sbjct: 260 VQLKDVARVKIGAESYGIDSQYNGKPAGAFGVQLLPGANALQVVESIHTKMDELQSTFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                T        +  I++ +  +  + + + + + I  + +   +     + + +  T
Sbjct: 320 GVTWFTPYESTTFIKISIKEVVKTLAEAIVLVFLVMLIFLQNFRATIIPTLVIPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +  +    K++ +
Sbjct: 380 FAGMLAIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERIMTEEHLEPKAATQKAMTQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  S+      +P A+     G++   FA+ +A  +  +A  ++     +     
Sbjct: 438 ITGAVIAISIVLTAVFIPSAMQPGAAGAIYKQFALTIAMSMGFSAFLALTFTPALCASFL 497

Query: 825 DWRAKNAR 832
                  +
Sbjct: 498 KSSHGQNK 505



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +  T+ F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLLIVPIGVLGTIVFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----------GGSV 793
               +       + R+    +        + TS+A  + VLP+A+            G  V
Sbjct: 949  ---VAQRALGKTLREATIDAARLRFRPILMTSLAFILGVLPLAISTGAGANARHAIGTGV 1005

Query: 794  IGSFAIPMAFGIVV 807
            IG        G++ 
Sbjct: 1006 IGGMTFATILGVIF 1019



 Score = 40.4 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 47/527 (8%), Positives = 132/527 (25%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R   W      ++   G L        +      P              +G +  ++++ 
Sbjct: 533  RTPRWTAFFAVLVVLCGFL------FTRMPSSFLPEED-----------QGFALAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS--------------RF 107
                          ++R+ L+K       M+        S  +                 
Sbjct: 575  PPGATKTRTNEVFAQMRAVLEKMPSIEGLMQISGFSFVGSGENVGMGFIRLKPWQERQET 634

Query: 108  KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
             + +  ++     G+            +    +     +  Q+          +    ++
Sbjct: 635  ADQLIQQLNGMFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRNGLGHEALTQARNVVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +   +  +          +   +QL    D  +   +  +T+ +               
Sbjct: 695  GKAAQRQDVMVGVRPNGLENSPQLQLT--VDRVQGESMGLSTSDIYKAIQ---------- 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              +     +D        +V +    +   + +     + P    +              
Sbjct: 743  LMLAPTYVNDYFSEGRIKRVNMRADDMYRTSPDSLRNFYTPSSSATDANGQPLMIPLSNI 802

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                   A     R      IN           G  + +   +LA ++          + 
Sbjct: 803  VKADWVYAAPSLNRYNGYSAINIV----GNTAPGTSSGQAMKVLAGIVNDDLPHGFGIVW 858

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
               +    L  ++        V  + L +  +        +     + + V+ T+    L
Sbjct: 859  SGMSYQEILAGNAATLLLVLSVVVVFLCLSALYE-SWSIPVAVLLIVPIGVLGTIVFSML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G    L    G++  IGLA  + IL+ E    +    +++  +        +  I  ++
Sbjct: 918  RGLPNDLYFKIGMITVIGLAAKNAILIVEFAVAQRALGKTLREATIDAARLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +  ++  + L      G  A       +   +  +    +  +  + 
Sbjct: 978  LAFILGVLPLAISTGAGANARHAIGTGVIGGMTFATILGVIFIPLLF 1024


>gi|226951712|ref|ZP_03822176.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acinetobacter
           sp. ATCC 27244]
 gi|226837502|gb|EEH69885.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acinetobacter
           sp. ATCC 27244]
          Length = 1054

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 72/588 (12%), Positives = 167/588 (28%), Gaps = 41/588 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V++  +I  +G L        +  L  +P+  P               + +    
Sbjct: 11  RPIFAVVISVLIVILGALSLF-----KLPLSEYPAITPPT-------------VQVMASY 52

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  + +  S  L   +   E +   S +   +    +T++F      +    +V  
Sbjct: 53  PGANPKIIAETVSSPLEQAVNGVENMLYMSSQTAADGKMVLTVTFKQGTDPDKAQIQVQN 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +VT       +++            +  S   +    D++   
Sbjct: 113 RVSRALPRLPEEVQRIGVVTEKTSPDILMVINLVSSNKNHDPLYLSNYALLNVRDELARL 172

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP ++     T   +       N        G +    + 
Sbjct: 173 PGVGNIEIGGAGEYSMRVWIDPEKVAARGLTANDVVAAIREQNMQVAAGSVGQQP-NTTS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V     ++                +    +       +         I       
Sbjct: 232 AYQVTVNTLGRLTTEE-------------QFSEIVVKAGDTGQITRLKDVARIELGSDAY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L     +          +            A L+          +          
Sbjct: 279 TMRALLDGKPTSALQIFMTPGANALDVSSEVRETMAELKKSFPDGVDYKIPYDPNIFVKA 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   ++ +++I T A++   G +L   ++
Sbjct: 339 SLKSVITTLLEAIALVVLVVILFLQTWRASIIPLIAVPVSLIGTFAIMYYFGFSLNTLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT---ALIAT 474
            G+VL IG+ VD  I+V E +       +S   +     S     I           I +
Sbjct: 399 FGLVLSIGIVVDDAIVVVENVERHIALGESPKEAARKAMSEVTGPIIAITAVLSAVFIPS 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFL 533
             L    G   R FA+T+ +S ++S   ++++  A+    +  ++            F  
Sbjct: 459 AFLTGLQGEFYRQFALTIAISTILSAINSLTLSPALAGILLKPHQAGNKKRDLTERLFGW 518

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                   F +A    VG        S  +L  +    G+ + G  ++
Sbjct: 519 FFRGFNRFFDKASDKYVGAVRKGVRLSAIMLILYVGFLGLTWLGFNKV 566



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 81/255 (31%), Gaps = 16/255 (6%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            A   + LS   +   S     +   N     +             A   + ++V++ + +
Sbjct: 801  AGDMIPLSTFVTIKRSSGPDRVMHYNSFPSADISGNAASGYSSGQATAAIEKIVQETLPQ 860

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILD 703
                  +           +      ++   ++ I   +++  ++  W      +    + 
Sbjct: 861  G-----MTYEWTDLVYQEKNTGNTAVMVFALAIILAFLFLAAQYNSWSMPFAVLLIAPMA 915

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +   +    + G + N+      + L+G +  + +++ +  R         ++  D + +
Sbjct: 916  LLSAIVGVWVTGSDNNIFTQIGFVVLVGLAAKNAILIVEFAR---AKEDEGLNPFDAVLE 972

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS-SSIF--IAAPIL 820
            +    L   + TS+A    V+P+ V            M   +       +IF  +  PI 
Sbjct: 973  AARLRLRPILMTSIAFIAGVIPL-VLATGAGAEMRHAMGIAVFSGMLGVTIFGLLFTPIF 1031

Query: 821  LFIYD---WRAKNAR 832
              +      R + A+
Sbjct: 1032 YVVIRNFILRREQAK 1046



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 62/147 (42%), Gaps = 7/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T      FG   N   +  ++  IG  V+D +VV + +    +
Sbjct: 365 WRASIIPLIAVPVSLIGTFAIMYYFGFSLNTLTLFGLVLSIGIVVDDAIVVVENV---ER 421

Query: 750 LYTTSISFRDLIDKSINETLGRSV--YTSM-AAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
                 S ++   K+++E  G  +     + A FI    +    G     FA+ +A   +
Sbjct: 422 HIALGESPKEAARKAMSEVTGPIIAITAVLSAVFIPSAFLTGLQGEFYRQFALTIAISTI 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNAR 832
           ++A +S+ ++  +  + +   +A N +
Sbjct: 482 LSAINSLTLSPALAGILLKPHQAGNKK 508


>gi|115525329|ref|YP_782240.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Rhodopseudomonas palustris BisA53]
 gi|115519276|gb|ABJ07260.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris BisA53]
          Length = 1055

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 74/690 (10%), Positives = 176/690 (25%), Gaps = 49/690 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I      +     L    + ++P   P               + +   
Sbjct: 8   RRPIFAWVIAIVIM-----LGGLLALTTLPVSQYPEIAPPT-------------IQISAS 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      +   +        +   S    Q +ITL+F +    +    +V 
Sbjct: 50  YPGADAQTVENSVTKVIEQGMTGLDNLDYMTASSTSSGQAEITLTFTNKANPDVAQMQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ V + L    +   L  T      +++             + +  +     D +  
Sbjct: 110 NKLQLVTALLPSIVQTTGLSVTKSTNGFLMVVGFVSTNGKMSETDVADYVKSSLNDTLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    DP +L +   T A ++      N        G    R  
Sbjct: 170 VEGVGNTQLFGGG-YAMRIWLDPEKLLKYALTPADVTAAIQAQNTQVSAGQLGGLPARKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  +  +                 +    +   +             +      
Sbjct: 229 QQLNATVTAQSRL-------------QTPAQFRNIVVKSDANGAMVRINDVATVELGAED 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                            +     +   T                     +          
Sbjct: 276 YTSSSTYNGLPATGLAVNLATGANAIRTAAAVKAAIDRQAPTFPQGVKAVYPYDTTPFVE 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   +  L+   ++ + ++ T  +L+L G ++   +
Sbjct: 336 ISIRDVTHTLVEAIVLVFVVMLVFLQNFRATLIPTLAVPVVLLGTFGVLALAGYSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +    + +  S   +     +     +           V
Sbjct: 396 MFAMVLAIGLLVDDAIVVVENVERVMHDEGLSPREATARSMTEITGALIGITTVLSAVFV 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R FA+T+  ++++S+  A+ +  A+   ++R  K           F 
Sbjct: 456 PMAFFGGSVGVIYRQFAVTIVSAMVLSVIVALVLTPALCATLLRPPKPHDEKSGVFGWFN 515

Query: 533 LIPDCIAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +       +         R R      +++        +         + +G + + V 
Sbjct: 516 RVLGRGTDAYHAGARGMLRRPRHGLAAFALVIVAAGALFIRLPSSFLPEEDQGLLMVAVQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                        L+ +    +  +    +    V      G           +K     
Sbjct: 576 LPVGATTDRTERVLDQVTRHFLDHETKAVDGLMTVTGFSFSGSGQNVGMAFVRLKDFDQR 635

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                +          +   +    +  + 
Sbjct: 636 KRAELSASVVAGRAMAVFAGIRDAKVFALA 665



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 61/141 (43%), Gaps = 9/141 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T G  AL G   N   + A++  IG  V+D +VV + +     
Sbjct: 363 FRATLIPTLAVPVVLLGTFGVLALAGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERV 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFG 804
           ++   +S R+   +S+ E  G  +   +   +    +PMA +GGSV      FA+ +   
Sbjct: 421 MHDEGLSPREATARSMTEITGALI--GITTVLSAVFVPMAFFGGSVGVIYRQFAVTIVSA 478

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           +V++   ++ +   +   +  
Sbjct: 479 MVLSVIVALVLTPALCATLLR 499



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/256 (10%), Positives = 72/256 (28%), Gaps = 9/256 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +      V  +    +            G    + ++G     ++    P  S    
Sbjct: 778  MQPEDLDLWYVRNSSGAMVPFSAFASGRWTFGSPRLERYNGTSAVQIQGDAAPSVSSGTA 837

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                                           +      + +++  + +     +   W  
Sbjct: 838  MAEIDRLVAGLPAGFGHEWTALSRQEQLSGNQAASLYAISILVVFLCLA---ALYESWSI 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + ++ + +   L    L G   ++     +LT IG +  + +++ +     +    
Sbjct: 895  PFAVMLSVPVGVFGALAAALLLGQSNDVYFKVGLLTTIGLAAKNAILIIEFA---IARQQ 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              +        +  + L   + TS A  + V P+ V    G +   S  I +  G++ + 
Sbjct: 952  AGLGLHRATLLAARQRLRPILMTSFAFILGVAPLVVASGAGSAAQNSIGIGVMGGMLAST 1011

Query: 810  SSSIFIAAPILLFIYD 825
               IF    + + +  
Sbjct: 1012 LLGIFFVPLLFVVVRR 1027


>gi|308186772|ref|YP_003930903.1| RND efflux system, transporter protein [Pantoea vagans C9-1]
 gi|308057282|gb|ADO09454.1| Putative RND efflux system, transporter protein [Pantoea vagans
           C9-1]
          Length = 1050

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 62/552 (11%), Positives = 146/552 (26%), Gaps = 39/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++       P   +  +P  +P               + +  + 
Sbjct: 10  RPIFAAVLSILIFVTGMIAI-----PLLPISEYPDVVPP-------------SVQVRAEY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                  +    +  L   +   E +         + +   T++F      +    +V  
Sbjct: 52  PGANPKVIADSVATPLEEAINGVENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  D ++  + T        ++           ++        +  D++   
Sbjct: 112 RVAQAEARLPEDVRRLGVTTQKMSPTLTLVVHMFSPNNTYDSLYLRNYATLKVKDELARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP+++     T + +       N        G   L+   
Sbjct: 172 PGVGQIQIFGAGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLKKQS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                 I       
Sbjct: 232 DFLLSINTQGRLESEQ-------------QFGDIILKTSEDGSLVRLRDVARIEMGSGSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +              L                      
Sbjct: 279 ALRSQLNNKDAVGIGIFQAPGANAIDLSNAVRAKMDELATRFPNDVKWAAPYDPTVFVRD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+
Sbjct: 339 SIKAVVQTLLEAVILVVLVVILFLQTWRASIIPLLAVPVSVVGTFSVLYLLGFSLNTLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +        S   +           I    +      V +
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIEMGLSPRAAAHQAMREVSGPIIAIALVLCAVFVPM 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + FA T+ +S +IS   ++++  A+   +++        +  +      
Sbjct: 459 AFLSGVTGQFYKQFATTIAISTVISAINSLTLSPALAAMLLKGHDAPKDRLTRIIDALFG 518

Query: 535 PDCIAIQFMRAR 546
                      R
Sbjct: 519 WLFRPFNRFFQR 530



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSVVGTFSVLYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
           +    +S R    +++ E  G  +        +V     +     G     FA  +A   
Sbjct: 425 M---GLSPRAAAHQAMREVSGPII-AIALVLCAVFVPMAFLSGVTGQFYKQFATTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAINSLTLSPALAAMLLK 500



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 55/147 (37%), Gaps = 8/147 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIIEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGEGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++      +F+     + +     + +
Sbjct: 1016 MLGVTLFGLFLTPVFYVALRKLVTRRS 1042


>gi|303245957|ref|ZP_07332239.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio fructosovorans JJ]
 gi|302492740|gb|EFL52608.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio fructosovorans JJ]
          Length = 1055

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 59/647 (9%), Positives = 172/647 (26%), Gaps = 40/647 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  +I      +     L    + ++P   P               + +    
Sbjct: 9   RPVLSNVLAVLIM-----LLGVVTLLGLPVAQYPDITPPT-------------VQVTTSF 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +    +  +   +           +     +  +T++F      +     V  
Sbjct: 51  PGASPQVIIDSVAAPIEQQVNGVEDMLYMSSNSASDGSYTLTVTFEVGTDVDMATVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L    +   +    +    ++            ++  S     +  D++   
Sbjct: 111 RVNQALARLPQQVQAQGVTVQKKSTAILMCVTLESPDNTYDSLFLSNYGYLRVRDELSRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                   +      +    DP +++    T   +       N        G +      
Sbjct: 171 PGVGSVTVNGSDEYGMRIWLDPDKVKTYGLTAQDVVNAVSQQNVQVAAGQIGQQPAPKDM 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY+++ +  +                   ++  +      +         +       
Sbjct: 231 HFQYMIQTQGRLEDAEQ-----------FGNIILKTDFNQTGQVLRLKDVARVELGSKTY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T +        + A   P  +  +          
Sbjct: 280 DLFAEKDGKPASIIAIYLLPGANALQTADMIKATMKKIAADFPPGLVYNIPFDTTRFVNQ 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVL+V+ + +   K  LV   ++ + ++     +++LG ++ L ++
Sbjct: 340 SIRDVYKTLIEAGILVLLVIMLFLQDFKAMLVPATTVPVTILGAFIAMAMLGFSVNLVTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            GI+L IG+ VD  I++ E       +  +   +  +     +  I    +  +   +  
Sbjct: 400 FGIILAIGIVVDDAIIIVEGTAHHIEQGSTPHDAAILTMKELFGPIIGITLVLISVFLPA 459

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   R F++ +  + +IS   A ++        ++    +             
Sbjct: 460 SFMPGITGQLYRQFSLVIAATAVISALNAATLKPTQCALWMKPHTKEPNAFFRGFNAVYQ 519

Query: 535 ---PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                   I           +     + ++  L    L  G   +      +++ +    
Sbjct: 520 RCENVYATIVGFMVHHAKTAMLGYVVLIAVTFLGFASLPTGFLPEEDQGYAIVSVQLPPA 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + +      ++  D   ++  G  +++        DS+ Q  +  + 
Sbjct: 580 ASLSRTAAVIKQIDGFMKDAPGVADWITFGGMSILDSLNQPNMAAVF 626



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 82/231 (35%), Gaps = 7/231 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + + L  V       +  D+  +      + +        +++    +++   KKI 
Sbjct: 259 QTGQVLRLKDVARVELGSKTYDLFAEKDGKPASIIAIYLLPGANALQTADMIKATMKKIA 318

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P   + N      +   + IR     +I + I +L+ I +    +   L   TT+ +
Sbjct: 319 ADFPPGLVYNIPFDTTRFVNQSIRDVYKTLIEAGILVLLVIMLFLQDFKAMLVPATTVPV 378

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I       A+ G   NL  +  ++  IG  V+D +++ +             +  D   
Sbjct: 379 TILGAFIAMAMLGFSVNLVTLFGIILAIGIVVDDAIIIVE---GTAHHIEQGSTPHDAAI 435

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
            ++ E  G  +  ++      LP +      G +   F++ +A   V++A 
Sbjct: 436 LTMKELFGPIIGITLVLISVFLPASFMPGITGQLYRQFSLVIAATAVISAL 486



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      I  + L +  T+    +  ++ N+     V+ LI  +  + +++ +  R+  
Sbjct: 891  SWCTPTAVILVVPLALLGTMAALMIRHMDNNVYTQIGVVLLIALASKNAILIVEFARE-- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +       ++        + TS A  + V+P+      G +   +    +  G+
Sbjct: 949  -RRAWGMDIAQAAVEAARLRFRPIIMTSFAFILGVVPLLTASGAGAASQRAVGTAVFGGM 1007

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            + +   ++ +     + +  +  +
Sbjct: 1008 LASTLLAVLVVPVFYVLVQGFAER 1031


>gi|118497685|ref|YP_898735.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           novicida U112]
 gi|194323657|ref|ZP_03057433.1| protein-export membrane protein SecD [Francisella tularensis subsp.
           novicida FTE]
 gi|118423591|gb|ABK89981.1| preprotein translocase, subunit D, membrane protein [Francisella
           novicida U112]
 gi|194322021|gb|EDX19503.1| protein-export membrane protein SecD [Francisella tularensis subsp.
           novicida FTE]
          Length = 645

 Score =  180 bits (455), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 280/542 (51%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D    ++  L      + S
Sbjct: 107 YIIAMNMLSNSP--NWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILS 164

Query: 80  FLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
             K   I + S  +                  ++++ A+S   + +   ++         
Sbjct: 165 AAKDNSINISSSTKAEEKSTIKAPQNYLENGFVSITLANSADVDKLKQYLST-------D 217

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 218 FIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G      
Sbjct: 278 DNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNGRGYQSY 337

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 338 YSLKGTAVAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 397

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 398 TTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 457

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ +N+IL 
Sbjct: 458 VPVHIVQEQQIGPSLGKDNIEKGMLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILI 517

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 518 VAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 577

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 578 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKK 637

Query: 521 KS 522
             
Sbjct: 638 LE 639



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIEKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  ++  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIVLALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|332670535|ref|YP_004453543.1| protein-export membrane protein SecF [Cellulomonas fimi ATCC 484]
 gi|332339573|gb|AEE46156.1| protein-export membrane protein SecF [Cellulomonas fimi ATCC 484]
          Length = 364

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/310 (23%), Positives = 137/310 (44%), Gaps = 13/310 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     +   +  R     IS +    S  LL   GLN GI+F+GG +  V  
Sbjct: 5   FAQWGNDLYTGRRSYDIVGRRKVWYTISAILVAVSAVLLVKPGLNPGIEFRGGSEFVVSG 64

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              +D  +    +++   G+       G ++  ++        ++ T V EM        
Sbjct: 65  VTDLDQQLAIDTVQANAPGESPKVTTIGTESLRIQTA-----ELSNTEVEEMQGALAEAY 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
                   +  +GP    ++ RK I G+++  + + + + I F+ W  A+ A+  L  D+
Sbjct: 120 GVPEENVTSSFIGPSWGADISRKAITGIVVFLLFVAVVMTIYFRNWRMAVAALIALFHDL 179

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLID 762
             T G +A  G E     V   LT++GYS+ D VVV+D++R+N    L  T  ++ +  +
Sbjct: 180 IITAGVYAGVGWEVTPATVIGFLTILGYSIYDTVVVFDKVRENTADTLEQTRFTYAEKAN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            ++N+TL RS+ TS+ A + V  +      V G   +   A+ +  G+++   SS+F+A 
Sbjct: 240 LAVNQTLVRSINTSVVALLPVASILFVGAFVLGAGTLRDIALALFVGMLIGTFSSVFLAT 299

Query: 818 PILLFIYDWR 827
           P  + + +  
Sbjct: 300 PAEVSLRERE 309


>gi|209550671|ref|YP_002282588.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536427|gb|ACI56362.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1066

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 147/544 (27%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P  +P + +                  
Sbjct: 10  RPVFAGVLSVLIVVAGLI-----GLRALPISEYPEVVPPSIV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PSVIAETVATPLEEQINGVEGMLYMSSQATSDGVLNVTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T       I++     D                  D++       
Sbjct: 116 AEPRLPTEVRSLGITTVKSSPNFIMVVNLVSDGDNHDITYLRNYATLNIKDRLARIAGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +     + +S      N      + G    +     Q 
Sbjct: 176 QVQVFGAGDYSMRVWIDPQKAAEHDLAASDISNAISSQNVQAAAGIIGASPSQPGVDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    A      
Sbjct: 236 NVNAQGRL-------------RTPEEFGNIIVKTGASGEITRLRDVARIELGAADYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 283 LLDGKPAVAVAVLQAPGSNAIEIADNVHATMDQLQLAMPEGVKYEIVYDTTKFVRASIEK 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G ++   S+ G+V
Sbjct: 343 VIDTLLEAIALVVLVVILFLQTWRASIIPLIAVPVSIIGTFAVMYVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEQGLSPRAATYKAMKEVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S +IS F ++++  A+   +++        +             
Sbjct: 463 GLSGQFYRQFALTIAISTVISAFNSLTLSPALAALLLKGHHQPKDWLTRFMDAIFGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 GFNR 526



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAIIMIVPMGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     + R+   ++    L   + TS+A  + V+P+ V    G  +  +  + +  G+
Sbjct: 960  -LEFEGRTPREAAIEASRLRLRPILMTSLAFIMGVVPLVVSTGAGAEMRAAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      IF+     + +  
Sbjct: 1019 IGVTFFGIFMTPVFYVLLRR 1038



 Score = 45.8 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---IAVPVSIIGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI---E 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R    K++ E  G  +  ++      +P+A      G     FA+ +A   V++A
Sbjct: 425 QGLSPRAATYKAMKEVSGPIIAIALVLVAVFVPLAFISGLSGQFYRQFALTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 FNS 487


>gi|322419315|ref|YP_004198538.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Geobacter
           sp. M18]
 gi|320125702|gb|ADW13262.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Geobacter sp. M18]
          Length = 1053

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/602 (11%), Positives = 163/602 (27%), Gaps = 34/602 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GLL           + ++P   P          +   + +     
Sbjct: 8   RPIFAWVIAIVVMLAGLLSI-----KALPVSQYPPIAPP---------QISVNAMYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        I L+F           +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQKMNGIDNLLYMSSTSDSAGAVSINLTFRAGTDPNVAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    +K  +         +++     +    +  + +  ++    D I  ++   
Sbjct: 114 ATPLLPQVVQKQGVQVVKSTRNFLMIVGLVSEDGSLNRYQLTDYMVSNIQDIISRTQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +P ++     T   +       N       FG            
Sbjct: 174 EVTVFGSQ-NAMRVWLNPDKMNNYKLTPNDVVNALQAQNAQISAGQFGGMPAMLGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                             
Sbjct: 233 TITARTLL-------------QSPEQFDSIVLRTNPDGSTVKLRDVARSDVGTENYDTLA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +        A  +   T +      A L          +           S   
Sbjct: 280 RYKGKPVAAMALRLAAGANALDTADRVKAKMAELEKFVPAGTKVVYPYDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV I++F+ +   +  L+   ++ + ++ TL +L   G ++   ++  +V
Sbjct: 340 VLKTLVEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGTLGILFAAGFSINTLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + IGL VD  I+V E +      +  S   +      +  S ++          + + FF
Sbjct: 400 IVIGLLVDDAIVVVENVERIMTDEGLSPHDATVKSMGQITSALWGIATVLCAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++++S+ TA  +  A+   +      K  +      F      
Sbjct: 460 GGSTGVIYRQFSITIVSAMILSVLTAQILTPALCATL-LKPVGKGHEACESGWFCGFFRW 518

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F  AR     +        +  L  +G   GI     ++L        D   +   
Sbjct: 519 FNKWFEAARHKYESLVGNSFGKPLRYLIVYGCLVGIMAFFFLRLPTAFLPDEDQGFIVCQ 578

Query: 598 LE 599
           ++
Sbjct: 579 IQ 580



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V  +    +  D   +        +        +++     ++    ++ + VP 
Sbjct: 260 VKLRDVARSDVGTENYDTLARYKGKPVAAMALRLAAGANALDTADRVKAKMAELEKFVPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
            T            +  I + +  ++ +   + I +++  +     L     + + +  T
Sbjct: 320 GTKVVYPYDTTPFVKISIEEVLKTLVEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG     G   N   + A++ +IG  V+D +VV + +     +    +S  D   KS+ +
Sbjct: 380 LGILFAAGFSINTLTMFALVIVIGLLVDDAIVVVENV--ERIMTDEGLSPHDATVKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                   +       +PMA +GGS       F+I +   ++++  ++  +   +   + 
Sbjct: 438 ITSALWGIATVLCAVFIPMAFFGGSTGVIYRQFSITIVSAMILSVLTAQILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 76/251 (30%), Gaps = 9/251 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +        + +      + ++G  +  +     PG S  +           
Sbjct: 793  VRNDKGEMVPFSAFATANWEHASPRLERYNGIPSMEIMGSAAPGISTGEAMSEMEAMAAK 852

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                ++      + +++  +A+     +   W      +  L L
Sbjct: 853  LPTGISYEWTGLSYEEKAAGKQAPALYAISLLVVFLAVA---ALYESWTIPFVNLLMLPL 909

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    L  +  ++     +LT +G S  + +++   ++  M          +   
Sbjct: 910  GLVGAVAAVTLRVLPNDIYLQIGLLTTVGLSTKNAILIIQFIKDQMHQ---GHELVEATL 966

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             ++   L   + TS+A F   LP+A+    G     +    +  G++ A    +      
Sbjct: 967  AAVKIRLRPVIMTSLAFFFGTLPLALTKGAGAGAQNAIGTAVTGGLLSATFIDLIFIPFF 1026

Query: 820  LLFIYDWRAKN 830
             + +    +K 
Sbjct: 1027 FVMVTKLFSKK 1037


>gi|217972974|ref|YP_002357725.1| acriflavin resistance protein [Shewanella baltica OS223]
 gi|304409189|ref|ZP_07390810.1| acriflavin resistance protein [Shewanella baltica OS183]
 gi|307303192|ref|ZP_07582947.1| acriflavin resistance protein [Shewanella baltica BA175]
 gi|217498109|gb|ACK46302.1| acriflavin resistance protein [Shewanella baltica OS223]
 gi|304353010|gb|EFM17407.1| acriflavin resistance protein [Shewanella baltica OS183]
 gi|306913552|gb|EFN43974.1| acriflavin resistance protein [Shewanella baltica BA175]
          Length = 1031

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/629 (11%), Positives = 176/629 (27%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISLLLVAFGLVS-----FDKLPLREYPNIDPPVV---------SIDTNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F  SR  E+ A+ V   + G
Sbjct: 55  SAAVVESRITQLIEDRISGVEGIRHVSSSSSDGRSSVTLEFDISRNIEDAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +      +  I+      D      +E +    R   D+  + +   
Sbjct: 115 LLDNLPEEADPPEVQKANGGDEVIMWLNLVSD--QMTTLELTDYTNRYLADRFSVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 RMRIGGGKVYAMRIWLDRQALASRSLTVADVEAALRAENVELPAGSIESKERHFTVRLE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RGYRTAEDFANLVITQGEDGYLVKLGDVARVEIGSEEERIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +          L   +               +      S   
Sbjct: 274 RGNKEAMIGLGVSKQSTANTLEVARAVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFTAMVLVIIVIYLFLGSVRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+TM  ++L S   A+++   M   +          ++ +D         
Sbjct: 454 GDLGKLFKEFAVTMSAAVLFSSIVALTLTPMMCSKLLKPSSQDSWLVRKVDGIMTKVSNR 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           V + I     +  +          + +G + L V   +      
Sbjct: 514 YQLSLKSAMAHPLLMSVLVLIALGSSAYLVQKVPQEFAPQEDRGSLFLMVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           + S +  ++   +   +    K  L+R  
Sbjct: 574 IESYMNEVENRLMPLVDTGDIKRLLIRAP 602



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 70/191 (36%), Gaps = 9/191 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   +++ +   +   + +    ++ +      +E+ +     +++  I + +++     
Sbjct: 299 AVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T       G   NL  + A++  IG  V+D +V+ + +    +
Sbjct: 356 VRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S          E     + T++      +P+    G    +   FA+ M+  ++
Sbjct: 413 RIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVL 472

Query: 807 VAASSSIFIAA 817
            ++  ++ +  
Sbjct: 473 FSSIVALTLTP 483



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 60/156 (38%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L    L G   N+ +   ++ L+G 
Sbjct: 860  LLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGALIGLWLTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++  + L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVDFDKAIIQASAQRLRPILMTGITTAAGAVPLVMAAGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +  GI++A   +IF+          
Sbjct: 977  GAETRFVIGVVVLSGILLATLFTIFVIPAAYGLFAR 1012


>gi|119775040|ref|YP_927780.1| AcrB/AcrD/AcrF family protein [Shewanella amazonensis SB2B]
 gi|119767540|gb|ABM00111.1| AcrB/AcrD/AcrF family protein [Shewanella amazonensis SB2B]
          Length = 1034

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/629 (11%), Positives = 175/629 (27%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P   P                     
Sbjct: 9   KRPVFASVISLLLIAFGLVA-----FDKLPLREYPHIDPPVV---------SIETNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F  +R  E  A+ +   +  
Sbjct: 55  SASVVESRITQLVEDRVSGVEGIRHISSSSSDGRSSVTLEFNINRDIEAAANDIRDRVSS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  +     +      +  I+      D    + +E +    R   D+    +   
Sbjct: 115 MLNNLPEEADPPEIRKANGGDEVIMWLNLVSDS--MNTLELTDYANRYLADRFSAVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  L    D   L     T A +       N          +    +   + 
Sbjct: 173 MLRLGGGKVYALRIWVDRQALAARNLTVADIESKLRSENVELPAGSVESKERHFTVRLER 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +                       +                 I           
Sbjct: 233 TFRTSED-------------------FANLVLAQGDDGYLVKLGDVAKIELGSEEERIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     + ++  +          L   +     P         +      S   
Sbjct: 274 RGNRESMIGLGVTKQSTANTLEVARAVNKLVDQINPTLPPGMEIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +      L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYTTLIIAMLLVILVIYLFLGSVHAMLIPAVTVPVSLLGTFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     + +S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEEGESPLVASFLGAREVAFAVVATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLSRFFL 533
           G      + FA+TM  +++ S   A+S+   M   ++R        +K +D         
Sbjct: 454 GDLGKLFKEFAVTMSAAVMFSSLVALSLSPMMCSKLLRPTSESSWLVKKVDKGMDWLEHT 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           + +     +    +          + +G + L V   +      
Sbjct: 514 YRSSLERTIRHPLAVSLTVIAALGLSVWMMQKVPQEFAPREDRGSMFLMVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           +   +  ++   +        K  L+R  
Sbjct: 574 IEKYMNEVEERLMPMVESGEIKRLLIRAP 602



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 82/233 (35%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   I F+        L   +    +++   R +  +  +I   +P 
Sbjct: 254 VKLGDVAKIELGSEEERIMFRGNRESMIGLGVTKQSTANTLEVARAVNKLVDQINPTLPP 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKT 707
                            I++    +II+ + +++ I++      A L    T+ + +  T
Sbjct: 314 GMEIKRSYDSSVFIEASIKEVYTTLIIAMLLVILVIYLFLGSVHAMLIPAVTVPVSLLGT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   NL  + A++  IG  V+D +V+ + +    +      S          E
Sbjct: 374 FIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIH---RRIEEGESPLVASFLGARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAA 817
                V T++      +P+    G    +   FA+ M+  ++ ++  ++ ++ 
Sbjct: 431 VAFAVVATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVMFSSLVALSLSP 483



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/156 (11%), Positives = 58/156 (37%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +      + T+ L     L    L G   N+ +   ++ L+G 
Sbjct: 860  VLALGVVFLVLAAQFESYIHPAVIMLTVPLATLGALIGLWLTGQTINIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F + +  +  + L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDRGVDFIEALLTASTQRLRPILMTGITTAAGAVPLVMAQGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +  GI++A   ++ +          
Sbjct: 977  GAETRFVIGVVVLSGIILATIFTLMVIPTAYALFAR 1012


>gi|148975336|ref|ZP_01812260.1| putative protein-export membrane protein SecF [Vibrionales
           bacterium SWAT-3]
 gi|145965260|gb|EDK30510.1| putative protein-export membrane protein SecF [Vibrionales
           bacterium SWAT-3]
          Length = 313

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/296 (25%), Positives = 145/296 (48%), Gaps = 7/296 (2%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                            R     ISI+  + S+ L+   G N+G+DF GG+   V  +  
Sbjct: 6   KMTISERYFSNSNMTLLRKVMSVISIVLFMSSVMLVAVKGFNWGLDFTGGVVAEVQLSDQ 65

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V    +++ L++    D+       +  + +R       S         +   +  +   
Sbjct: 66  VTKDALKTQLDAAFQQDVQVVGMAEQDRWTIRY------SQLTDAPQTNLVDALASVSDQ 119

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + N+ +VGP++ ++++ +G + V++  + +++Y+ +RF+W  ALGA+  +I D+T   
Sbjct: 120 VKVLNSSVVGPQVGQDMVDQGGLAVLVCFLMIMLYLSVRFEWRLALGALAAIIYDVTIIF 179

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G FAL   EFNLT +AAVL ++GYS+ND +++ DR+R+ ++         +L+++S+  T
Sbjct: 180 GLFALTQFEFNLTVLAAVLAILGYSLNDSIIIADRVREMLRGNPNG-DTDNLLNESVKAT 238

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             R++ TS    ++V  + + GG+ +  FAI +  GI     SSI +   +   + 
Sbjct: 239 FSRTMVTSGTTLLTVSALWLLGGAALQGFAIALVVGIASGTWSSISVGITLPKLLG 294


>gi|319942027|ref|ZP_08016346.1| hydrophobe/amphiphile efflux-1 family transporter [Sutterella
           wadsworthensis 3_1_45B]
 gi|319804411|gb|EFW01289.1| hydrophobe/amphiphile efflux-1 family transporter [Sutterella
           wadsworthensis 3_1_45B]
          Length = 1045

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/681 (10%), Positives = 190/681 (27%), Gaps = 48/681 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   GL+           ++ +P   P               L +     
Sbjct: 10  PRFAAVVSLVITISGLISLW-----NLPVEEYPEISPPT-------------LFISATYA 51

Query: 64  DFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLF 118
                 +       + + +   E +  FS     +      ++F      +     +   
Sbjct: 52  GASADVVTQTVAIPIENEINGVEDLLYFSSTSSNSGTYNCQVTFKTGTDSDIALVNLQNA 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++  +++L  +  K  +        ++ +     +       E +  + +   D +   +
Sbjct: 112 VKRADAQLPSEVTKTGVSVEKRGSDTLGMFVFRTNGASMDLNELANYVDKTLKDDLARVD 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP R+  +   T+ ++      N        G     DS  
Sbjct: 172 GVSSTSMMSESEYAMRIWLDPVRMAGMGIGTSDVTNAINAQNIQAAPGNVGSEGSSDSVT 231

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            +  V  ++                      + +  D    R         +    +   
Sbjct: 232 YKVNVTGRLA--------------DPAEFGAIILRSDAASGRVVRLSDVARVELGSSSYT 277

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G  +                +   T+       A                        +
Sbjct: 278 GGTTINGEPAVGLALYRSPDANALATMNRVKAKLAEWEPRLPEGVTVSPAYDPTKFIQTT 337

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV+++ +  +   +  L+   +I +++I T  +++ L  ++   ++ 
Sbjct: 338 MEEMVVTILSALLLVILITWAFLQSWRATLIPAAAIPVSLIGTFTVMAALSLSINTLTLF 397

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G++L IG  VD  I+V E       +  S   +           +  + +  +   + L 
Sbjct: 398 GLILVIGSLVDDAIVVVENTERLIAQGLSPHDAAVKSMQEITGAVIATTLVTVACYLPLA 457

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--------KSIDINP 527
           F+GG      R FA++M +++ IS   A+++  A+   ++R            +      
Sbjct: 458 FYGGMVGAIYRQFAVSMCVALSISAVVALTLSPALCALVLRPGDGAADAEQASRGFSAKF 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
              F          ++R   W +  S++ ++  I  +      YG      I        
Sbjct: 518 FKPFNRFLSASRESYVRGSAWLIRRSLIAAVGMIAAVGVTWFLYGRIPTAFIPSEDKGVI 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             ++ +     ++     +            V+   Q       +   E     + ++ P
Sbjct: 578 FANIELPADATQNRTEAVMETVLERLRTIPGVQTVMQNVGMSMLSGSGEYAGMAVLDLKP 637

Query: 648 LSTIQNTEIVGPKISRELIRK 668
            +     E     I  E+ ++
Sbjct: 638 WNERTTPETQLSAIQAEIAKR 658



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 89/236 (37%), Gaps = 9/236 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V                       L   +    +++A    ++    +    +P 
Sbjct: 261 VRLSDVARVELGSSSYTGGTTINGEPAVGLALYRSPDANALATMNRVKAKLAEWEPRLPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
               +      K  +  + + +V ++ + + +++  W     W   L     + + +  T
Sbjct: 321 GVTVSPAYDPTKFIQTTMEEMVVTILSALLLVILITWAFLQSWRATLIPAAAIPVSLIGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSIN 766
               A   +  N   +  ++ +IG  V+D +VV     +N  +L    +S  D   KS+ 
Sbjct: 381 FTVMAALSLSINTLTLFGLILVIGSLVDDAIVVV----ENTERLIAQGLSPHDAAVKSMQ 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           E  G  + T++      LP+A +G   G++   FA+ M   + ++A  ++ ++  +
Sbjct: 437 EITGAVIATTLVTVACYLPLAFYGGMVGAIYRQFAVSMCVALSISAVVALTLSPAL 492



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 47/437 (10%), Positives = 115/437 (26%), Gaps = 10/437 (2%)

Query: 396  LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
            +  ++    +S+L  +     +A + L       +         +     ++   +    
Sbjct: 609  VQTVMQNVGMSMLSGSGEYAGMAVLDLK-PWNERTTPETQLSAIQAEIAKRTQNIAAAEI 667

Query: 456  FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
             S     I     T           G G V    ++  ++   S           M    
Sbjct: 668  VSFTPPAIMGLGGT---GGASFEICGVGTVDTAHLSDAVNRFKSALGDRPETLFAMSSYS 724

Query: 516  RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
                     ++      L      +               F++           +     
Sbjct: 725  ADTPQLRFTLDREKAELLQVPASDVYSTMQTLLASYYVNDFTMNGSNYEVIVQADSKYRG 784

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                   +         V  S L SL       Q     K     +  Q    V+     
Sbjct: 785  SNLSLEEIPTTSSDGNIVPLSALGSLSWEVGPQQITRFNKMTSAGVNAQSAAGVSSGAFY 844

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            + ++      +P         +  +  +   +   +  +    A L  +     W   L 
Sbjct: 845  KAIEDTAAASLPKDYHIEWTGLSYQERQNAGQIVTLMGLALLFAYLFLVAQYESWTIPLS 904

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             + +++  +   L    L G + ++     ++ LIG +  + +++ +  +       + +
Sbjct: 905  VMLSVLFAVMGALLGLELTGGDMSIYTQLGMVMLIGLAGKNAILMVEFAK---TARESGL 961

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
            S  +   +  +      + T+ +    VLP+      G +   +  I    G++ A    
Sbjct: 962  SIIEAAKQGASIRFRAVMMTAWSFLFGVLPLVFATGAGSASRRAIGITTFAGMLTATLIG 1021

Query: 813  IFIAAPILLFIYDWRAK 829
            IF    +       R K
Sbjct: 1022 IFFIPFLFTLFETLREK 1038


>gi|83312524|ref|YP_422788.1| cation/multidrug efflux pump [Magnetospirillum magneticum AMB-1]
 gi|82947365|dbj|BAE52229.1| Cation/multidrug efflux pump [Magnetospirillum magneticum AMB-1]
          Length = 1059

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/552 (12%), Positives = 154/552 (27%), Gaps = 39/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  IG +           + ++P   P               +V+    
Sbjct: 10  RPIFATVVSVLITIIGAIT-----YFALPVAQYPEIAPPT-------------IVVSASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +    +  L   +   E +   + +   +   K+T++FA     +     V  
Sbjct: 52  PGASAQVVADTVATPLEQQINGVENMLYMNSQATGDGNLKLTVTFALGTNLDTAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  D K+  +         +++   N        +  S     Q ID +   
Sbjct: 112 RVAIATARLPDDVKRIGITVAKNSPDMLMVVHVNSPDGSREQLYLSNFATLQMIDVLARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +      T  ++       N      +     +    
Sbjct: 172 DGVGEVRIFGARDYAMRVWIDPDKAAARNLTAGEVVKALQAQNVQIAAGVLDQPPVPKQG 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V+ +  +                 +    I   +   R         I       
Sbjct: 232 AFQLSVQTQGRL-------------LDPAQFGEVIVKADSSGRVVRLKDVARIELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T E        L           +          
Sbjct: 279 SVNGYLNGNNAVPVAVFQRPGSNALATAERVIAKVEELSRTFPSGVSYTIAYNPTQFIAQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+ V+ + +   +  L+   +I ++++ T A+L  +G +L   S+
Sbjct: 339 SVKAVIKTIFEAVILVVFVVILFLQTWRASLIPLAAIPVSLVGTFAVLGAMGYSLNNLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL +G+ VD  I+V E +    +   +   +          A  +I        I  
Sbjct: 399 FGLVLAVGIVVDDAIVVVENVERNMKDGMNARSAAHQTMDEVGSALISIALVLCAVFIPA 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   R FA+T+  S +IS+  ++++  A+   + R             R  + 
Sbjct: 459 AFIPGISGQFFRQFAVTIAASTVISLIVSLTLSPALCALLFRGHGPLDHHEETGWRRQVA 518

Query: 535 PDCIAIQFMRAR 546
                      R
Sbjct: 519 RFFTWFNHNFDR 530



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              G+     S + + + +  +++ W      +  + + +   +    + G+  N+ A   
Sbjct: 879  NNGLFVFAASVLFVFLLLAAQYESWSLPAAVVLIVPMCLLAAVTGLIIRGLPINILAQIG 938

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             + LIG +  + +++ +  R   +  +  +   +    +    L   + TS+A  + VLP
Sbjct: 939  FIVLIGLAAKNAILIVEFAR---QAESEGMDRIEAAVHAGRTRLRPILMTSLAFILGVLP 995

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      G  +  S    + +G++   +  +       + I  
Sbjct: 996  LVAGTGAGAEMRQSLGTAVFYGMLGVTAFGLVFTPIFYVVIRK 1038



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 56/529 (10%), Positives = 127/529 (24%), Gaps = 39/529 (7%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M  +        ++   GL+ A      ++     P       I++     G S    + 
Sbjct: 538  MTRSVVRKSGIMLLLYAGLIGAAGVEFVKTPKGFIPEMDQGYLITVVQLPPGASLSRTDA 597

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-------SRFKENIAD 113
                      +                 F+       I                   I  
Sbjct: 598  AVKRVAAIMAETPGVAHTLAFAGLDGATFTNASNGAAIFTPLKPFEERYAQGLSANVIMA 657

Query: 114  KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
             +   L  V     +      +          ++ Q+          + ++++  +  ++
Sbjct: 658  DLRKRLSTVQDAFIITIAPPPVRGIGTAGGFKMMLQDKGGHGSKALEDVALDMAAE-ANK 716

Query: 174  IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
            I   +        +     +  + D  R + L   T ++S    +   S     F     
Sbjct: 717  IPGLQGIF--TLFNTRTPNVYADIDRVRAQMLGVPTDRVSEALQVYLGSAFVNEFNYLGR 774

Query: 234  RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                  Q     + E+  I       +         V     + G  R            
Sbjct: 775  TFRVTAQADAPFRNEVEDIANIKVRNDKGQMVPIGAVSSFRFDTGPYRV----------- 823

Query: 294  LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                 +         + A                A  L                      
Sbjct: 824  --PRYNLFPAAEVQGSAAPGYASGYALEQMRALAAERLPEGFGFEW-----------TEL 870

Query: 354  ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA--T 411
            A     +   G     A ++ + L +   Y  W L A   + + + L  A+  L+     
Sbjct: 871  ALQELLAGNNGLFVFAASVLFVFLLLAAQYESWSLPAAVVLIVPMCLLAAVTGLIIRGLP 930

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            + + +  G ++ IGLA  + IL+ E  R+   +      +           I  +++  +
Sbjct: 931  INILAQIGFIVLIGLAAKNAILIVEFARQAESEGMDRIEAAVHAGRTRLRPILMTSLAFI 990

Query: 472  IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
            +  + L      G    +     +   +L      +       + I + 
Sbjct: 991  LGVLPLVAGTGAGAEMRQSLGTAVFYGMLGVTAFGLVFTPIFYVVIRKM 1039


>gi|261856013|ref|YP_003263296.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Halothiobacillus neapolitanus c2]
 gi|261836482|gb|ACX96249.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Halothiobacillus neapolitanus c2]
          Length = 1053

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/570 (12%), Positives = 164/570 (28%), Gaps = 38/570 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G             ++++P  +P +             +    + 
Sbjct: 9   RPIFATVLAVVITLAGAAA-----FTGLPVEQYPQIVPPD-----------VQVTATYNG 52

Query: 63  DDFVNGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            D      +  +  L   +        +   S       +T++FA+    +     V   
Sbjct: 53  ADA-ATIAESVAAPLEQRINGVDNMLYMSSSSSDAGTMALTVTFANGTDPDQATIDVNNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +Q   S+L  + +   +V   +    +++     ++        S   +   ID++   +
Sbjct: 112 VQQALSQLPQEVRDQGVVVQKKSNAILMVITLLSEKGQFDTKFISNYALLNIIDELKRIK 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP++L     T   +       +       F         G
Sbjct: 172 GVGDTQLFGAQDYSMRIWLDPAKLAHFKLTPTDVGNAIKAQSAQFAAGKFNDAPNDSRAG 231

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             Y +      + +              +    I                 I        
Sbjct: 232 FTYTITADGRFTDVD-------------QFRNIILRGNPDGGTLRLKDVARIELGSKFYG 278

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +   T+         L+A         +          S
Sbjct: 279 FNATFNGKPTVPIGVFLSPGANALETVAAIRDRMQELQARFPGDLAYKIPLDTTDFVRIS 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV++V+F+ +   +  L+   +I + +I  LA L L G ++ L ++ 
Sbjct: 339 IKEVLKTLLEAMVLVVLVIFVFLQKPRATLIPLIAIPVALIGALAGLFLSGMSINLLTLF 398

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G VL IG+ VD  I+V E +    R+   +   +      +    I  + +  L   + +
Sbjct: 399 GFVLAIGIVVDDAIIVIENVERLMREEMLNARDAAIKAMHQVTGPIIATTLVLLAVFIPV 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   R FAI + +S+++S   A+++  AM   +++  + K   +         
Sbjct: 459 AFIPGLTGEMYRQFAIAISISVVLSAVVALTLTPAMTAVLLKKHEDKPPALPFRVFNRGF 518

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLL 564
                       F+     +   + +  ++
Sbjct: 519 SSLTNAYMGLVHFFLRAWPVGLMLFAGVII 548



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 64/151 (42%), Gaps = 14/151 (9%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MRK 746
              L  +  + + +   L    L G+  NL  +   +  IG  V+D ++V +     MR+
Sbjct: 365 RATLIPLIAIPVALIGALAGLFLSGMSINLLTLFGFVLAIGIVVDDAIIVIENVERLMRE 424

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
            M      ++ RD   K++++  G  + T++      +P+A      G +   FAI ++ 
Sbjct: 425 EM------LNARDAAIKAMHQVTGPIIATTLVLLAVFIPVAFIPGLTGEMYRQFAIAISI 478

Query: 804 GIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
            +V++A  ++ +   +  + +     K   +
Sbjct: 479 SVVLSAVVALTLTPAMTAVLLKKHEDKPPAL 509



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 64/170 (37%), Gaps = 7/170 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            + G + + +  I + + +   + +W   L  IT +   +   L    + G++ ++     
Sbjct: 869  KSGAIALGLGIIMVFLILAALYERWTLPLAVITAIPFAVLGALLANWMRGLDIDVYFQVG 928

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +L LI  S  + +++ +      K++    +  +    +        + TSMA  + VLP
Sbjct: 929  LLVLIAMSAKNAILIVEFA---AKIHAEGKTIAEAAVAAARIRFRPVIMTSMAFILGVLP 985

Query: 786  MAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +A+  G       +    +  G++ A   ++               K +R
Sbjct: 986  LALASGAGEGARHALGTGIVGGMIFATYIAVLFIPMFFELTQTLSEKVSR 1035


>gi|332670536|ref|YP_004453544.1| protein-export membrane protein SecD [Cellulomonas fimi ATCC 484]
 gi|332339574|gb|AEE46157.1| protein-export membrane protein SecD [Cellulomonas fimi ATCC 484]
          Length = 647

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 214/577 (37%), Gaps = 39/577 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R+ P   +L+  +  + L   +     +S     P        +L LDL GG+ ++L+  
Sbjct: 7   RHRPVRTLLWLGLLVVALFGTIFAGTERSTATWTP--------NLALDLEGGTQVILKPV 58

Query: 61  --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
             D     +  +    + +R  +   G+    +        +        E   + V   
Sbjct: 59  SDDPGAITSETISQAIEVIRQRVDSSGVAEAEITSQSGNNIVVALPGTPSEETLELVRTS 118

Query: 119 LQ-GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            Q      L       +             +     +    A  Q         D     
Sbjct: 119 AQMEFRPVLTFGAPTPVGEDDAAAPEPTESAAATDPEAADPAATQ-----EPAADAAATP 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS------KKGFMFGVR 231
           E T                  PS     +    +  F  +   +         G      
Sbjct: 174 EPTPSASAPASDTPAKAAPDTPSDAAYYVTPAVQERFDTLDCTDPSNLTGGAPGDPDAAF 233

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT-----HKPVVDISFDEMGARRFFEVT 286
              D  G    +   VEI G  ++GA++           ++ VV++ F   G  +F +VT
Sbjct: 234 VTCDPAGTAKYILGPVEIEGGEISGASSGLRQTQTGGVTNEWVVNLEFTSKGTTQFTDVT 293

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIP-------SGKAQISGNFTIETAGILAAMLRAGS 339
               G          VL   VI+           +GKA+ISG FT E+A  LA  L  GS
Sbjct: 294 TRLQGLTSPQNQFAVVLDGLVISAPGLDPGTIISNGKAEISGTFTRESAATLANQLNFGS 353

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           LP+   +  E  + A LGS+ + KG  A + GLVL+V++ +  Y   GL+   S+ +  +
Sbjct: 354 LPLTFEVQSEEQISATLGSEQLQKGLVAGLIGLVLVVIYSLFQYRALGLLTVSSLIVAAV 413

Query: 400 LTLALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           +T  +++LL  T     +LP +AG+++ IG+  DS I+  ERIR+E R+ +++  +++ G
Sbjct: 414 ITYGVITLLSWTQGYRLSLPGVAGLIVAIGITADSFIVYFERIRDELREGRTLQAAVERG 473

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           + RA  TI  S+    IA  VL+    G VRGFA T+GL+ +I +         +M  I 
Sbjct: 474 WERARRTILASDAVNFIAAAVLYVLAVGGVRGFAFTLGLTTIIDVIVVFLFTHPVMTLIA 533

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
           R K               +   +     R R      
Sbjct: 534 RTKFWGEGHPWSGLDPRRLGVDVPRYAGRGRVVAPTP 570



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 102/285 (35%), Gaps = 9/285 (3%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                S L    +  +     +N     KG  Q   +  R   L+  ++    +  G + 
Sbjct: 256 ISGASSGLRQTQTGGVTNEWVVNLEFTSKGTTQFTDVTTRLQGLTSPQNQFAVVLDGLVI 315

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP-LSTIQNTEIVGPKISRELI 666
                     +   + +   +  +     +  +     +P    +Q+ E +   +  E +
Sbjct: 316 SAPGLDPGTIISNGKAEISGTFTRESAATLANQLNFGSLPLTFEVQSEEQISATLGSEQL 375

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE----FNLTA 722
           +KG+V  +I  + ++IY   +++    L  +++LI+    T G   L         +L  
Sbjct: 376 QKGLVAGLIGLVLVVIYSLFQYR-ALGLLTVSSLIVAAVITYGVITLLSWTQGYRLSLPG 434

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           VA ++  IG + +  +V ++R+R  ++      + +  +++         + +    FI+
Sbjct: 435 VAGLIVAIGITADSFIVYFERIRDELRE---GRTLQAAVERGWERARRTILASDAVNFIA 491

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + V     +  FA  +    ++          P++  I   +
Sbjct: 492 AAVLYVLAVGGVRGFAFTLGLTTIIDVIVVFLFTHPVMTLIARTK 536


>gi|153001104|ref|YP_001366785.1| acriflavin resistance protein [Shewanella baltica OS185]
 gi|151365722|gb|ABS08722.1| acriflavin resistance protein [Shewanella baltica OS185]
          Length = 1031

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/629 (11%), Positives = 176/629 (27%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISLLLVAFGLVS-----FDKLPLREYPNIDPPVV---------SIDTNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F  SR  E+ A+ V   + G
Sbjct: 55  SAAVVESRITQLIEDRISGVEGIRHVSSSSSDGRSSVTLEFDISRNIEDAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +      +  I+      D      +E +    R   D+  + +   
Sbjct: 115 LLDNLPEEADPPEVQKANGGDEVIMWLNLVSD--QMTTLELTDYTNRYLADRFSVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 RMRIGGGKVYAMRIWLDRQALASRSLTVADVEAALRAENVELPAGSIESKERHFTVRLE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RGYRTAEDFANLVITQGEDGYLVKLGDVARVEIGSEEERIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +          L   +               +      S   
Sbjct: 274 RGNKEAMIGLGVSKQSTANTLEVARAVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFTAMVLVIIVIYLFLGSVRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+TM  ++L S   A+++   M   +          ++ +D         
Sbjct: 454 GDLGKLFKEFAVTMSAAVLFSSIVALTLTPMMCSKLLKPSSQDSWLVRKVDGIMTKVSNR 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           V + I     +  +          + +G + L V   +      
Sbjct: 514 YQLSLKSAMAHPLLMSVLVLIALGSSAYLVEKVPQEFAPQEDRGSLFLMVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           + S +  ++   +   +    K  L+R  
Sbjct: 574 IESYMNEVENRLMPLVDTGDIKRLLIRAP 602



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 70/191 (36%), Gaps = 9/191 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   +++ +   +   + +    ++ +      +E+ +     +++  I + +++     
Sbjct: 299 AVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T       G   NL  + A++  IG  V+D +V+ + +    +
Sbjct: 356 VRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S          E     + T++      +P+    G    +   FA+ M+  ++
Sbjct: 413 RIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVL 472

Query: 807 VAASSSIFIAA 817
            ++  ++ +  
Sbjct: 473 FSSIVALTLTP 483



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 60/156 (38%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L    L G   N+ +   ++ L+G 
Sbjct: 860  LLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGALIGLWLTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++  + L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVDFDKAIIQASAQRLRPILMTGITTAAGAVPLVMAAGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +  GI++A   +IF+          
Sbjct: 977  GAETRIVIGVVVLSGILLATLFTIFVIPAAYGLFAR 1012


>gi|88607954|ref|YP_505865.1| preprotein translocase subunit SecD [Anaplasma phagocytophilum HZ]
 gi|88599017|gb|ABD44487.1| protein-export membrane protein SecD [Anaplasma phagocytophilum HZ]
          Length = 508

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 175/507 (34%), Positives = 280/507 (55%), Gaps = 24/507 (4%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             +   ++C + +   LPNF+           + + + +LGLDLRGG++L+LEVD  +++
Sbjct: 6   KAVATFLLCALSIYFVLPNFVDSKF------FVSQKKANLGLDLRGGTYLLLEVDFQEYL 59

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              L   SDEL+ FL++E I    +      + L   D      +               
Sbjct: 60  KERLYGLSDELQDFLQREKIPYDKLYVKNRTVVLHLGDPADLARVKAF------------ 107

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                KN+  T T   + I  +++    ++   I+ S   I +R+D+ G  E TI+  G 
Sbjct: 108 ----NKNVDFTGTSPHLLISFTESYTKSLLKGVIDDSTNNILRRLDKSGTKEITIKSQGE 163

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYLVED 245
           ++I +Q+PG  +   ++ L+G TAK++FH +    +         R L D+ GN + V  
Sbjct: 164 NKISLQVPGVHNVDNIKSLIGKTAKLTFHLLEDVKNLADINPLTTRLLYDASGNAFPVMK 223

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
           +VEISG  L    +       + VV   FD    ++F ++T+ + GKP A VLD  VLTA
Sbjct: 224 RVEISGDSLVD-ASAGLNSVGRAVVYFKFDSAATKKFADITKQHAGKPFAAVLDNVVLTA 282

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           PVI + I  G  +I+G F +ETA  LA +L++G+LP  LNI+EER VG  LG+ SI KG 
Sbjct: 283 PVIREPILGGNGEITGRFDLETAKELAILLKSGALPAPLNIIEERVVGPSLGARSIEKGR 342

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A ++ + ++ +F+I+ YG  GL A   +  N++  L  ++ LGATLTLP IAGI L +G
Sbjct: 343 LATISSIAVVSIFVIMSYGVLGLFAVIGLVFNIVFVLLAMTFLGATLTLPGIAGITLTVG 402

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +++D+N+L+ ERIREE R +  +  +++ GF  A STIFDSN+T LI  V++   G  +V
Sbjct: 403 MSIDANVLIFERIREEMRASGKLRLAVERGFKNAMSTIFDSNMTTLIVAVIMLVSGSTSV 462

Query: 486 RGFAITMGLSILISMFTAISIVRAMMI 512
           +GFA T+G+ IL SM +A+ + + ++ 
Sbjct: 463 QGFAATLGIGILCSMLSAVVLTKVLID 489



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 74/169 (43%), Gaps = 5/169 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +    I KG +  I S   + I++ + +     L A+  L+ +I   L      G  
Sbjct: 330 GPSLGARSIEKGRLATISSIAVVSIFVIMSYGVL-GLFAVIGLVFNIVFVLLAMTFLGAT 388

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A +   +G S++  V++++R+R+ M+        R  +++     +     ++M
Sbjct: 389 LTLPGIAGITLTVGMSIDANVLIFERIREEMRASGK---LRLAVERGFKNAMSTIFDSNM 445

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              I  + M V G + +  FA  +  GI+ +  S++ +   +L+ +   
Sbjct: 446 TTLIVAVIMLVSGSTSVQGFAATLGIGILCSMLSAV-VLTKVLIDVGVR 493


>gi|307726719|ref|YP_003909932.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1003]
 gi|307587244|gb|ADN60641.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1003]
          Length = 1076

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/687 (11%), Positives = 193/687 (28%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  IG             ++++PS  P               + +    
Sbjct: 8   RPILAWVIAIVIMMIGGASI-----TTLPVEQYPSVAPA-------------SVQITATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   L        +   S    Q +ITL+F      +    +V  
Sbjct: 50  PGASAETVATTVTQVIEQKLSGIDHLLYMSSTSSSVGQARITLTFQQGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   S L    ++  +         +++   +       +I+    I  Q  D +   
Sbjct: 110 KVEQATSSLPETVQEQGVQVAKAANSFLMIVSLSSSDGSISSIDLGNIIATQIEDPLTQI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP RL+ +  TT+ ++      N        G      + 
Sbjct: 170 DGVGDVTLFGAQ-HAMRIWLDPVRLQAVGLTTSDVTTAITNQNVQLSVGQIGGSPSTKTQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     ++                +    +        +        I       
Sbjct: 229 ALNATISASSLLT-------------TPAQFGAILLRVNSDGSKVMLKDVARIEVGADDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +     +        L        +             
Sbjct: 276 STDSRLNGKPAASLAIKLASGANAMSVAKAVRAKLEELSPQLPRNVVVDYPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+    + + ++ T A++S +G ++ + S+
Sbjct: 336 SIEEVVKTLIEAVLLVFVVMYVFLQNLRATLIPTIVVPVALLGTFAVMSAVGFSINVLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +      +    +       +   + 
Sbjct: 396 FGMVLAIGLLVDDAIVVVENVERLMAEEKLSPVEATRRAMKQITGALIGITTVLVAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R F+IT+  ++L+S+F A+++  A+   +++   ++  D   +  +F 
Sbjct: 456 MAFFAGTTGAIYRQFSITIVAAMLLSVFLALTLTPALCATLLKRSDVEHHDRRGVLGWFN 515

Query: 534 I-------PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                       A+  +  +     +  +     + LLF    +  +  +    +    +
Sbjct: 516 RVLSRGTDRYDSAVARVIGKPMRYMVIYVLIAGVVALLFMKLPSSYLPDEDQGSIITSIS 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            PV     ++     ++ +      + ++   +      G           +K       
Sbjct: 576 APVGTPASQTLEVVKKVENYYRSQPEVDQLIALTGFSFNGSGQNNALAFVKLKDWSARRG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
              +              L    +  V
Sbjct: 636 SNGSASAVIQRANMHFAALRDAQVFAV 662



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 76/198 (38%), Gaps = 8/198 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             LE +  ++   V +    +T         E+++  I  V++  + M +++        
Sbjct: 308 AKLEELSPQLPRNVVVDYPYDTTPFVRISIEEVVKTLIEAVLLVFVVMYVFLQ---NLRA 364

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  T    +  G   N+ ++  ++  IG  V+D +VV + +     +  
Sbjct: 365 TLIPTIVVPVALLGTFAVMSAVGFSINVLSMFGMVLAIGLLVDDAIVVVENV--ERLMAE 422

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +S  +   +++ +  G  +  +       +PMA + G+       F+I +   ++++ 
Sbjct: 423 EKLSPVEATRRAMKQITGALIGITTVLVAVFIPMAFFAGTTGAIYRQFSITIVAAMLLSV 482

Query: 810 SSSIFIAAPILLFIYDWR 827
             ++ +   +   +    
Sbjct: 483 FLALTLTPALCATLLKRS 500



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            + I    IS I + + +  +   W   +  I  + L +   +    L G+  ++     +
Sbjct: 903  QAIYLYAISLIVVFLCLAGLYESWSIPIAVILVVPLGVLGAVLGAHLRGLSDDIYFKVGL 962

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            L  IG S  + +++ +  +    L        +   ++    L   + TS+A    VLP+
Sbjct: 963  LATIGLSTKNAILIVEFAKD---LQAQGRGLIEAAVEAARLRLRPILMTSLAFVFGVLPL 1019

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             +    G +   +    +  G++ A   +I
Sbjct: 1020 VISTGAGSASRHAIGTGVMGGMIAATVLAI 1049


>gi|327330394|gb|EGE72143.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL097PA1]
          Length = 391

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 11/312 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L    I+  F++ R     I+ +  I S   L   GLN GI+FKGG+Q   
Sbjct: 25  KRKRSFTHALYTGEISYGFIQRRKVWYTITAVVIIISFIGLLVRGLNLGIEFKGGVQFRA 84

Query: 584 LANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            A+     +  VR ++ S    D+         +  V++Q +  ++   T+V E + K  
Sbjct: 85  PAHVATSTIDDVRKSVLSSGAPDMDATEVVSLGSDAVQVQTRALNNDETTKVQEAIAKA- 143

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                  +      VG +   ++  K I  +++  + +++ IW  F+ W  ++ A+  L+
Sbjct: 144 --TGTKMSSVTYSKVGSQWGEQITGKAIKALVVFLVLVMLQIWAYFRHWKMSIAALVALL 201

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDL 760
            D+  T+G +AL G   + + V  VLT++GYS+ D VVV+D++R+N++       +F + 
Sbjct: 202 HDLIVTIGIYALVGFTVSPSTVIGVLTILGYSLYDTVVVFDKVRENVQDIDKRDYTFAEG 261

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            ++++N+ L RS+ T++   + V  +      V G   +    + +  G++V A SSIFI
Sbjct: 262 ANRAVNQVLVRSINTTIVGVLPVAALLFAGAFVLGSGPLEDLGLALFVGMIVGAYSSIFI 321

Query: 816 AAPILLFIYDWR 827
           A P+   + +  
Sbjct: 322 ATPVFTQLREHE 333


>gi|197104544|ref|YP_002129921.1| Cation/multidrug efflux pump [Phenylobacterium zucineum HLK1]
 gi|196477964|gb|ACG77492.1| Cation/multidrug efflux pump [Phenylobacterium zucineum HLK1]
          Length = 1060

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/695 (11%), Positives = 187/695 (26%), Gaps = 46/695 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G         P   + ++P   P               + +    
Sbjct: 10  RPIFAAVISIIIVLVGAFA-----YPTLPVAQYPEIAPPT-------------ITVTAVY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +    +  L   +   E +   S     +    IT++F            V  
Sbjct: 52  PGASAEVIADTVATPLEQEINGVEDMLYMSSSSTSDGRLTITITFKLGTDLNAAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  + ++  +VT       +++               S     Q  +Q+   
Sbjct: 112 RVASAEARLPEEVRRLGVVTRKASPDLLMVIHLYSPDGSRSPEYISNYATLQLRNQLARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP +      T  ++       N        G     D+ 
Sbjct: 172 EGVGDAQIFGARDYAMRVWIDPDKAAAHNLTAGEIVQALRGQNVQVAAGTVGAPPFSDAG 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                           LN +T        +    +   +                     
Sbjct: 232 AAF------------ELNVSTQGRLVAPEQFEDVVIRADGPQIVRVRDVARVELGAQDYN 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           ++  +           S +   +   T +              P     V          
Sbjct: 280 VNAYLDRGQKAVVIGISQRPGSNALSTADGVLETMKTAAESFPPGLAYTVIYNPTEYVAE 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV++V+ + +   +  ++   +I +++I    +++  GA+L   S+
Sbjct: 340 SIKEVRKTLLEAVVLVVLVVVVFLQTWRAAIIPVLAIPVSLIGAFLVMAGFGASLNNLSL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +        +   +            I  + +   +    
Sbjct: 400 FGLVLAIGIVVDDAIVVVENVERNLAAGMTPKEAAYKTMEEVGGALIAIALVLTAVFVPT 459

Query: 477 LFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDIN 526
            F  G  G   R FA+T+  + LIS   ++++  AM   +         R +  ++    
Sbjct: 460 AFITGISGQFYRQFALTIASATLISCLVSLTLSPAMAALLLRPHPAHPPRPRGWRAPFQR 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             + F    + ++ ++ R     V    L       LL      +     G I       
Sbjct: 520 FGAWFNRAFERLSARYGRLTGHTVRRVALMLAIYAVLLLFTVWRFAATPTGFIPAQDQGY 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               + +   +  +     +     +      V            T         I   +
Sbjct: 580 FIAVVQLPPGSSLARTDAIVRRVADEALDTKGVIHAAAFAGLDGATFTNAPNAGTIFLSL 639

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                +  E V  +   + +R  +  +  + + ++
Sbjct: 640 THFEDRAKEGVDDQEVLDALRARLGAIPGANVLVI 674



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 78/250 (31%), Gaps = 12/250 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   V L  V +  +      +   N           +       A   V +M  +++ 
Sbjct: 801  DSGAMVPLGSVATVRDDSGPYRVVRYNLFPAAELQGDTKPGYSSGQALAAVEQMADERLP 860

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
            E                  +E    G +   ++ + + + +  +++     L  I  + +
Sbjct: 861  EGFGH-----EWTELAYQQKEAGNTGPIAFGLAVVFVFLLLAAQYESVTLPLAIILIVPM 915

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    L G + N+     ++ LIG +  + +++ +  +   +     +       
Sbjct: 916  CLLAAMLGVNLRGQDNNILTQIGLVVLIGLAAKNAILIVEFAK---QAEDRGLDRWAAAV 972

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS A  + VLP+      G  +  +    + FG+    +  +      
Sbjct: 973  EAARTRLRPILMTSFAFILGVLPLVTASGPGAEMRQALGTAVFFGMAGVTAFGLLFTPAF 1032

Query: 820  LLFIYDWRAK 829
             +       +
Sbjct: 1033 YVLCRGISDR 1042



 Score = 39.3 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 94/251 (37%), Gaps = 12/251 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR--VLEM 637
            +     + V +  V       Q  +++     G+K  ++ +  +PG +   T   VLE 
Sbjct: 254 VIRADGPQIVRVRDVARVELGAQDYNVNAYLDRGQKAVVIGISQRPGSNALSTADGVLET 313

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           +K       P             ++  +       +    + +L+ +     W  A+  +
Sbjct: 314 MKTAAESFPPGLAYTVIYNPTEYVAESIKEVRKTLLEAVVLVVLVVVVFLQTWRAAIIPV 373

Query: 698 TTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             +   ++    F  +  FG   N  ++  ++  IG  V+D +VV + + +N+      +
Sbjct: 374 LAI--PVSLIGAFLVMAGFGASLNNLSLFGLVLAIGIVVDDAIVVVENVERNLAA---GM 428

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           + ++   K++ E  G  +  ++      +P A      G     FA+ +A   +++   S
Sbjct: 429 TPKEAAYKTMEEVGGALIAIALVLTAVFVPTAFITGISGQFYRQFALTIASATLISCLVS 488

Query: 813 IFIAAPILLFI 823
           + ++  +   +
Sbjct: 489 LTLSPAMAALL 499


>gi|120609091|ref|YP_968769.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acidovorax
           citrulli AAC00-1]
 gi|120587555|gb|ABM30995.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax citrulli AAC00-1]
          Length = 1052

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/685 (11%), Positives = 173/685 (25%), Gaps = 48/685 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G L        +  + ++P+  P               + + V  
Sbjct: 8   RPIFAWVITIFIMVMGGLSI-----TKLPIAQYPAVAPPT-------------IQVSVAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKK---EGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  L+      +   +           + +      ITLSF      +     V  
Sbjct: 50  PGANAQTLEDSVLAVIEREMNGATGLAYVETTSQANGTGSITLSFEPGTNADLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L     +  +     +   ++ +    +         +    R  + ++   
Sbjct: 110 RLSRATPRLPAAVTQQGVRVEQSRSNFLMFAMLTTENPDVSIEALNDYAARNVVPELQRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L+    +  +++      N        G        
Sbjct: 170 SGVGTLTQFGA-ERAMRVWVDPAKLKGFNLSLDQVNAAIRAQNVQVSAGNLGDLPAEQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K +++                +    +                 I       
Sbjct: 229 PVSATIVVKGQLNNAE-------------QFGNVVLRANTDGSTVRLKDVARIELGSQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +        L+         +V          
Sbjct: 276 STSARLNGKQAVGLGVQPTPSANALATAKAVRAKLEELKKFFPQGVNYVVPYDTSKFVSV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   ++ ++    + + ++ T   L  +G ++ + ++
Sbjct: 336 SIEKVVHTLIEAVVLVFIVMFLFLQNFRYTIIPTIVVPVALLGTFGALLAMGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +    +    +  +   V 
Sbjct: 396 FGMVLVIGIVVDDAIVVVENVERIMAEEGLPPLQATRKAMGQISGAVIGVTVVLISVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           L FF    G   R FA TM  SI  S F A+S+  A+   +           K       
Sbjct: 456 LAFFAGSTGNIYRQFAATMATSIAFSAFLALSLTPALCATLLKPIDPEHHADKKGFFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             S         +      R  G  + I   +     L    L             +   
Sbjct: 516 NRSFKSTTHRYESWMGKLLRRGGRMMIIYAVLLGAVALVYTRLPTSFLPNEDQGYIITNI 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    +      + L   +         +N +    +          +  +V K  +E  
Sbjct: 576 QLPAGAAQSRTSDVLHQVEDYMLKQPEVENIVTVAGFSFSGQGQNAGLAFVVLKDWSERS 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIV 671
                         ++   IR   +
Sbjct: 636 GAEHSAAAISGRAFMALSGIRDAFI 660



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 74/202 (36%), Gaps = 9/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G     +L       +   S +A+ + +   ++ W   
Sbjct: 835  DAMAEMEKLAGQLPPGFGFEWTGQSREEKLAGSQATVLYAFSLLAVFLCLAALYESWSIP 894

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   L    + G+  ++     ++T+IG S  + +++ +  +    L   
Sbjct: 895  FSVMLVVPLGVLGVLLATLMRGMSNDVYFQIGLVTIIGLSAKNAILIVEFAKD---LQAE 951

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAAS 810
              S  +   ++ +      V TS+A  + V+P+ +  G+      +    +  G++    
Sbjct: 952  GRSVLEAALEAAHLRFRPIVMTSLAFTLGVVPLFIASGASSASQRAIGTGVIGGMITGTV 1011

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             ++ I  P+   +     K ++
Sbjct: 1012 LAV-IFVPVFFVLVRSFFKGSK 1032



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 79/210 (37%), Gaps = 6/210 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                  +++A  + +    +++ +  P            K     I K +  +I + + 
Sbjct: 291 VQPTPSANALATAKAVRAKLEELKKFFPQGVNYVVPYDTSKFVSVSIEKVVHTLIEAVVL 350

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + I +++  + + + +     + + +  T G     G   N+  +  ++ +IG  V+D +
Sbjct: 351 VFIVMFLFLQNFRYTIIPTIVVPVALLGTFGALLAMGFSINVLTMFGMVLVIGIVVDDAI 410

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           VV + +     +    +       K++ +  G  +  ++      +P+A + GS      
Sbjct: 411 VVVENV--ERIMAEEGLPPLQATRKAMGQISGAVIGVTVVLISVFVPLAFFAGSTGNIYR 468

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            FA  MA  I  +A  ++ +   +   +  
Sbjct: 469 QFAATMATSIAFSAFLALSLTPALCATLLK 498


>gi|157962014|ref|YP_001502048.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           pealeana ATCC 700345]
 gi|157847014|gb|ABV87513.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella pealeana ATCC 700345]
          Length = 1044

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/678 (11%), Positives = 185/678 (27%), Gaps = 46/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +GL+        Q  +D++P   P               + +    
Sbjct: 8   RPVFASVISIVIVLLGLIAMF-----QLPIDQYPYITPP-------------QVKISASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
               +    +  +  L   L     +   S +   +    IT++F      +  A     
Sbjct: 50  PGATSTTAAESVATPLEQELNGLPNMIYMSSKSTNSGSTNITITFDVGTNPDLAAVDAQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q     L +D +   +  + E  + ++      +      I  S          +   
Sbjct: 110 STQQATGSLPIDVQTEGVSVSKEASVELLKLALTSEDERYDEIYLSNYATINIQSALKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +   +      +    +P  +     TT+ +       N        G +   D+ 
Sbjct: 170 PGVGRVRNTGARSYSMRVWLNPDTMAGYGLTTSDVIDAIKAQNKESPAGSIGSQPNADTL 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S                +    I                NI    +  
Sbjct: 230 SMTLPITAAGRMS-------------SVPQFNEIIVRASADGSIIRLRDIANIELGSSSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L           V          
Sbjct: 277 TLQSQLNGNNATILQVYLLPGANALEVTKKVKSEMAKLAQKFPQGMNWEVFFDASVFIEN 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+FM +   +  L+   ++ +++I TLA +   G T+   S+
Sbjct: 337 SIDEVVKTLVEALILVILVVFMFLQNIRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +    + K  S   +  +        +  +++      V 
Sbjct: 397 LALVLAIGIVVDDAIVVVENVERLMDEKGLSSSQATKVAMKELSGALIATSLVLAAVFVP 456

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G   R FA+ + +++LIS   A+++  A+   ++R     +          L
Sbjct: 457 VSFLSGITGIMYREFAVAITVAVLISTLVALTLSPALCALLLRPGDKATSGFFKWMNDRL 516

Query: 534 IPDCIAI------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                            A+   +  +++     + +          + +G   + V    
Sbjct: 517 DTATTKYVGLVVLTNKHAKRSYLLFALMVGGVYLTMSSLPSSFMPDEDQGRFFIDVSLPN 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++  +  L+  +   ++              +    +       + +          
Sbjct: 577 GATVNRTQDVLKKAEATVLAHPAVAYSFTLAGENRRSGSNQANGQFEIILKPWSDRVDND 636

Query: 648 LSTIQNTEIVGPKISREL 665
            +  +    +   +   L
Sbjct: 637 ATVQKVMNEIKQSLHDVL 654



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            + +         +  Q        L        +++  T+ ++    K+ +  P     
Sbjct: 265 DIANIELGSSSYTLQSQLNGNNATILQVYLLPGANALEVTKKVKSEMAKLAQKFPQGMNW 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                        I + +  ++ + I +++ +++  +     L     + + +  TL   
Sbjct: 325 EVFFDASVFIENSIDEVVKTLVEALILVILVVFMFLQNIRATLIPAIAVPVSLIGTLAAM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             FG   N  ++ A++  IG  V+D +VV + +     +    +S       ++ E  G 
Sbjct: 385 LAFGFTINTVSLLALVLAIGIVVDDAIVVVENV--ERLMDEKGLSSSQATKVAMKELSGA 442

Query: 772 SVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + TS+      +P+  + G + I    FA+ +   ++++   ++ ++  +   +  
Sbjct: 443 LIATSLVLAAVFVPVSFLSGITGIMYREFAVAITVAVLISTLVALTLSPALCALLLR 499



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALG-AITTLILDITKTLGFFALFGIEFNLTAVA 724
             +  + V ++ + + +++   ++ W   +   +   I  +  ++G   + G+E NL    
Sbjct: 866  NQTAIAVTLAMVFVFLFLAALYESWTLPIAVLLIAPIAMLGASVGTL-VSGMESNLFFQV 924

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            A + LIG +  + +++ +      +L+    S  D   ++ N      + TS+A  + VL
Sbjct: 925  AFIALIGMAAKNSILIVEFAN---QLHKEGKSRLDSAIEAANMRFRPILMTSLAFILGVL 981

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            P+      G     S +IP+  G++ A +  I +     +    W
Sbjct: 982  PLVFSVGPGAVSRQSISIPILCGMIFATTIGIIMVPLFFVTTAGW 1026


>gi|310814851|ref|YP_003962815.1| aminoglycoside efflux pump [Ketogulonicigenium vulgare Y25]
 gi|308753586|gb|ADO41515.1| aminoglycoside efflux pump [Ketogulonicigenium vulgare Y25]
          Length = 1035

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/570 (10%), Positives = 157/570 (27%), Gaps = 32/570 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G+       L    + ++P   P                      
Sbjct: 8   RPVFAWVLSIITMLFGVW-----GLQSLPIAQYPEVAPTTVR---------ISASYSGAP 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   S ++     V    Q +  +TL+F DS   +    +V   +Q +
Sbjct: 54  AEAVENAVTTPIENGLSDVEGLLYMVSQSSQGRATVTLTFDDSMDPDMAQIQVQNRMQSI 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    + N +  +   +  ++++    +      ++    +       +   E    
Sbjct: 114 TNQLPDSVQDNGVSVSRSTDSILMVAALVSEDGSYTTLQLGDMMEELIEPTVTRVEGVGG 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP  L Q   T + ++      N++      G + +         
Sbjct: 174 IQAFGT-SYAMRIWMDPFNLVQYQLTPSDITSAISSRNSTVTVGSLGSQPVVPGQQFSVS 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  + +++                +    +          +      +            
Sbjct: 233 MTAQSQLT-------------SPEEFERILLRTNEDGSHVYLGDVARVEIGQQSYGQDSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +  +  +   T          L+                     S    
Sbjct: 280 FNGKPAAGFGVNLSSGANAVDTAHNVTTALTNLQNALPDGVEIAYAYDTSPFVEQSIEKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T A    LV +V+ + +   +  L+   ++ + V+ T  +L++   ++   ++  +VL
Sbjct: 340 YHTLAEAVLLVFLVILIFLQSWRATLIPTLAVPVVVLGTFGVLAVFDMSINTLTMFALVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IGL VD  I+V E +      +      +           +           + + F  
Sbjct: 400 AIGLLVDDAIVVVENVERVMEEEGLDARAATRKSMREITPALVGIVTVLSAVFLPMAFMP 459

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F++T+  ++++S+F A+ +  A+   +++ +               +    
Sbjct: 460 GSTGVIYRQFSVTIISAMVLSLFVALILTPALCATMLKPQHGPRKFPPARWFNNALAGFT 519

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHG 568
                  R+          + +        
Sbjct: 520 NRYASTNRWILKVPVQSIIVLAAITGALWY 549



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 51/408 (12%), Positives = 117/408 (28%), Gaps = 15/408 (3%)

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            + L  D ++  +    +   + QS+   L         ++  S  + L+   ++   G 
Sbjct: 88  TVTLTFDDSMDPDMAQIQVQNRMQSITNQLPDSVQDNGVSVSRSTDSILMVAALVSEDGS 147

Query: 483 GAVRGFAITM--GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
                    M   +   ++    +  ++A          M   ++               
Sbjct: 148 YTTLQLGDMMEELIEPTVTRVEGVGGIQAFGTSYAMRIWMDPFNLVQYQLTPSDITSAIS 207

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR---PVDLSVVRSN 597
                   G   S          +     +     +   ++ +  N     V L  V   
Sbjct: 208 SRNSTVTVGSLGSQPVVPGQQFSVSMTAQSQLTSPEEFERILLRTNEDGSHVYLGDVARV 267

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
               Q      +                 ++V     +      +   +P          
Sbjct: 268 EIGQQSYGQDSRFNGKPAAGFGVNLSSGANAVDTAHNVTTALTNLQNALPDGVEIAYAYD 327

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI 716
                 + I K    +  + + + + I I    W   L     + + +  T G  A+F +
Sbjct: 328 TSPFVEQSIEKVYHTLAEAVLLVFLVILIFLQSWRATLIPTLAVPVVVLGTFGVLAVFDM 387

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             N   + A++  IG  V+D +VV + +     +    +  R    KS+ E     V   
Sbjct: 388 SINTLTMFALVLAIGLLVDDAIVVVENV--ERVMEEEGLDARAATRKSMREITPALV--G 443

Query: 777 MAAFI--SVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +   +    LPMA   GS       F++ +   +V++   ++ +   +
Sbjct: 444 IVTVLSAVFLPMAFMPGSTGVIYRQFSVTIISAMVLSLFVALILTPAL 491



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/242 (11%), Positives = 73/242 (30%), Gaps = 10/242 (4%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S       +              +    R     G   A       + +         
Sbjct: 785  NSSGEMVPFSAFMTQKWEVVPTSLARFGGTRAVSMSGSPAADVSSGAAMDRMEQIAAEQP 844

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITK 706
               +    G              ++ +  A+++++    +   W      +    +    
Sbjct: 845  GGYSVAWTGLSYQER-QSGSQAPLLFALSALVVFLCLAALYESWSVPFAVLLAAPVGALG 903

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             LG   LF    ++     +L  IG +  + +++ +  ++    +   +  +D   ++  
Sbjct: 904  ALGAALLFDQSNDVYFKVGLLATIGLASRNAILIVEFAKE---RFDRGMDLKDAAIEAAR 960

Query: 767  ETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + TS+A  + VLP+      G +   +  I +  G++ +    IF+     + +
Sbjct: 961  LRLRPILMTSIAFMLGVLPLATAKGAGAAAQHAIGIGVLGGMIASTIIGIFLIPAFYVVV 1020

Query: 824  YD 825
              
Sbjct: 1021 TR 1022


>gi|220916517|ref|YP_002491821.1| protein-export membrane protein SecF [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954371|gb|ACL64755.1| protein-export membrane protein SecF [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 402

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 148/361 (40%), Gaps = 9/361 (2%)

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           I  +    +   ++L+           +       + +     +  A        + +  
Sbjct: 23  IAVALSLVVNLAIILWSLPFVHGLNMGVDFAGGTEMEVQFGKPVDPA--DIRKTVEDLGF 80

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +  +          I+  R            +      L   G  +  +F   I   
Sbjct: 81  KGASVQTYGAEAEHTFLIRVERISLLTEADVARVADAVKTKLPVAGFAFNPEFGDKIDFQ 140

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                             +++ D+  +           +  Q      Q  +   +    
Sbjct: 141 FSGAVDAAAVRAAVEAAGVKVRDVREEQGLTAGTRSYAVITQGIQENVQAGLKAQL---- 196

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   ++  E VGP   REL  +G+  ++ +   +++YI +RF + F+ G +  ++ 
Sbjct: 197 --GDSQPNVRRVEYVGPAAGRELQAQGLKAILYAIGLIVVYIGLRFDFRFSPGVVIAMLH 254

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D   T+G+F + G EFNLT++A +LT++GYSVND VV+YDR+R+N        S  D+++
Sbjct: 255 DAIMTMGYFTISGREFNLTSIAVILTVVGYSVNDTVVIYDRIRENQAKL-RGRSLSDIVN 313

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINE LGR+  TS A  +S++ + V+G   I  F++ M FGIV    S+ FIAAP+ ++
Sbjct: 314 LSINEVLGRTFLTSFATALSLIGLLVYGVGTIFDFSMAMLFGIVSGTYSTWFIAAPMTIW 373

Query: 823 I 823
           +
Sbjct: 374 L 374


>gi|332678398|gb|AEE87527.1| Protein-export membrane protein SecD [Francisella cf. novicida Fx1]
          Length = 645

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 280/542 (51%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D    ++  L      + S
Sbjct: 107 YIIAMNMLSNSP--NWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILS 164

Query: 80  FLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
             K   I + S  +                  ++++ A+S   + +   ++         
Sbjct: 165 AAKDNSINISSSTKAEEKSTIKAPQNYLENGFVSITLANSADVDKLKQYLST-------D 217

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 218 FIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G      
Sbjct: 278 DNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNGRGYQSY 337

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 338 YSLKGTAVAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 397

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 398 TTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 457

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ +N+IL 
Sbjct: 458 VPVHIVQEQQIGPSLGKDNIEKGMLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILI 517

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 518 VAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 577

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 578 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKK 637

Query: 521 KS 522
             
Sbjct: 638 LE 639



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIEKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  ++  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIVLALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|314923580|gb|EFS87411.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL001PA1]
 gi|314966625|gb|EFT10724.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL082PA2]
 gi|314981354|gb|EFT25448.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL110PA3]
 gi|315092020|gb|EFT63996.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL110PA4]
 gi|315092853|gb|EFT64829.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL060PA1]
 gi|315103627|gb|EFT75603.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL050PA2]
 gi|327327449|gb|EGE69225.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL103PA1]
          Length = 395

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/314 (25%), Positives = 149/314 (47%), Gaps = 11/314 (3%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           S          L    I+  F++ R     I+    I S   L   GLN GI+FKGG+Q 
Sbjct: 27  SKKRKHNFTHALYTGEISYGFIQRRKIWYTITAAVIIISFIGLLIRGLNLGIEFKGGVQF 86

Query: 582 GVLANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              A+     +  VR ++ S    D+         +  V++Q +  +S   T+V E + K
Sbjct: 87  RAPAHVATSTIDEVRKSVLSSGAPDMDATEVVSLGSDAVQVQTRALNSDETTKVQEAIAK 146

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                   ++      VG +   ++  K I  +++  + +++ IW  F+ W  ++ A+  
Sbjct: 147 A---TGTKTSSVTYSKVGSQWGEQITGKAIKALVVFLVLVMLQIWAYFRHWKMSIAALVA 203

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFR 758
           L+ D+  T+G +AL G   + + V  VLT++GYS+ D VVV+D++R+N++       +F 
Sbjct: 204 LLHDLIVTIGIYALVGFTVSPSTVIGVLTILGYSLYDTVVVFDKVRENVQDIDKRDYTFA 263

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSI 813
           +  ++++N+ L RS+ T++   + V  +      V G   +    + +  G++V A SSI
Sbjct: 264 EGANRAVNQVLVRSINTTIVGVLPVAALLFAGAFVLGSGPLEDLGLALFVGMIVGAYSSI 323

Query: 814 FIAAPILLFIYDWR 827
           FIA P+   + +  
Sbjct: 324 FIATPVFTQLREHE 337


>gi|77458883|ref|YP_348389.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas fluorescens Pf0-1]
 gi|77382886|gb|ABA74399.1| putative cation efflux protein [Pseudomonas fluorescens Pf0-1]
          Length = 1063

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/595 (12%), Positives = 161/595 (27%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   I    D++       
Sbjct: 116 TEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAILNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G      +   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVTAIREQNRQVAAGQLGAPPAPTAQSFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 +    +      
Sbjct: 236 SINTQGRLVTEE-------------EFENIVIRAGEDGEITRLKDIARVELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +              L+ G        +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRAKMEELKKGFPQGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+V
Sbjct: 343 VVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        + F +           I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLNPFDATKKAMGEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF---LIP 535
              G   + FA+T+ +S +IS F ++++  A+   +++         + +        + 
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRVLDKIFGGWLF 522

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F RA    VG        S   LF +     + F G            D
Sbjct: 523 RPFNRFFDRASHSYVGTVRRVIRGSGIALFLYAGLMVLTFFGFSSTPTGFVPGQD 577



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    ++  D   K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLNPFDATKKAMGEVTGPIIATAL-VLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/216 (10%), Positives = 74/216 (34%), Gaps = 10/216 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS---- 676
            +  +   + A        +K I +++              ++ + I  G   + +     
Sbjct: 831  ITAEINGAAAPGYSSGQAEKAIEKLLKDELPNGMTYEWTDLTYQQILSGNTALFVFPLCV 890

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +A L+       W   L  I  + + +   +    + G + N+     ++ L+G +  +
Sbjct: 891  LLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVIISGGDNNIFTQIGLIVLVGLACKN 950

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ +  +         +     + ++    L   + TS A  + V+P+      G  +
Sbjct: 951  AILIVEFAKD---KQQEGLDPLAAVLEACRLRLRPILMTSFAFIMGVVPLVFSSGAGAEM 1007

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  + +  G++      + +     + I ++  +
Sbjct: 1008 RHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNFVER 1043


>gi|42523692|ref|NP_969072.1| SecD, protein-export membrane protein [Bdellovibrio bacteriovorus
           HD100]
 gi|39575899|emb|CAE80065.1| SecD, protein-export membrane protein [Bdellovibrio bacteriovorus
           HD100]
          Length = 564

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 170/577 (29%), Positives = 284/577 (49%), Gaps = 67/577 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M    W   +  +     L+  LPN +  S +  +PS   K +++ GLD++GG HLV+ V
Sbjct: 1   MEGLRWRTFVAVLGVAASLVWVLPNLVNLSEVSWWPS---KQKLNYGLDIQGGLHLVMGV 57

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI---QNKITLSFADSRFKENIADKVTL 117
           D D  V          +++ + K+ +    ++       ++ +  AD+  K  +   ++ 
Sbjct: 58  DVDGVVKESTTRLISTIKAEMTKDNVAYADVKSEKPESGEVQVVVADAAGKAAVEKFISD 117

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               V            +V++T+  ++       ++   +  I+QS+E IR RID+ G++
Sbjct: 118 KYSTVLQ----------VVSSTDTSVTARYFDAYLNDYKNRVIQQSIETIRNRIDEFGVA 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR--- 234
           E +I + G++RILIQLPG  D  + +QL+ TTAK+ F  V    + +     +  +    
Sbjct: 168 EPSISQQGANRILIQLPGMADAEKAKQLINTTAKLDFMIVSHEKTPQELQVMIAEVEKAG 227

Query: 235 -----------------------------------------DSDGNQYLVEDKVEISGIH 253
                                                    D+    YL++   ++ G  
Sbjct: 228 NFNMENTKYSDYVTRVNEALAGKLPEKTVVYFEKAPNATTIDAGAIPYLLKTDTDLGGGA 287

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
           L         +   P V + F+  GA++F ++T +N+GK +A+VLD  V +AP +   I 
Sbjct: 288 L-DDAFVGYDQYGSPQVSLQFNSAGAQKFADLTGNNVGKQMAIVLDKIVKSAPSVRDRIA 346

Query: 314 SGKAQIS------GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
            G A I+       N  +E A +++  LRAG+LP  L  +EER VG  LG+D+I K    
Sbjct: 347 GGSAVITLGGGRDRNGMMEEAKMISTSLRAGALPASLEQLEERRVGPTLGADAIGKAKLG 406

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
              G  +I++FMI  Y   G+VA  ++ LN++   ALL+  GATLTLP IAGI L +G A
Sbjct: 407 SYVGAAIIIIFMIAYYKSMGVVASVALGLNILGIFALLTTFGATLTLPGIAGIALTVGFA 466

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+NERIREE R    +  ++  G++RA S I D+N+T     VVL +FG G VRG
Sbjct: 467 VDANVLINERIREELRMGHGIKVAVAEGYNRAMSAIIDANVTTAATAVVLLYFGTGPVRG 526

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           FA+T+ + I+ SMF  + + + ++  ++    +K + 
Sbjct: 527 FAVTLLIGIVTSMFANVFVSKVIVDTLVNKFNLKKLS 563



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 30/174 (17%), Positives = 78/174 (44%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I K  +G  + A  ++I++   +K    + A   L L+I         FG  
Sbjct: 392 GPTLGADAIGKAKLGSYVGAAIIIIFMIAYYK-SMGVVASVALGLNILGIFALLTTFGAT 450

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A +   +G++V+  V++ +R+R+ +++       +  + +  N  +   +  ++
Sbjct: 451 LTLPGIAGIALTVGFAVDANVLINERIREELRM---GHGIKVAVAEGYNRAMSAIIDANV 507

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               + + +  +G   +  FA+ +  GIV +  +++F++  I+  + +      
Sbjct: 508 TTAATAVVLLYFGTGPVRGFAVTLLIGIVTSMFANVFVSKVIVDTLVNKFNLKK 561


>gi|294146756|ref|YP_003559422.1| HAE1-family efflux protein [Sphingobium japonicum UT26S]
 gi|292677173|dbj|BAI98690.1| HAE1-family efflux protein [Sphingobium japonicum UT26S]
          Length = 1047

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/687 (12%), Positives = 187/687 (27%), Gaps = 49/687 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GL   L        + ++P   P               + +  + 
Sbjct: 9   RPIFAWVIAIGIMMAGLGAML-----TLPIAQYPDIAPP-------------SVNISANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   L            S    Q +IT++F      +    +V  
Sbjct: 51  PGAAAETVETSVTQVIEQQLTGIDGLMYFSSSSTANGQARITVTFKKGTDPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S+L    ++  L  T  +   +++         +   + S  ++    D I   
Sbjct: 111 KVQQALSRLPNAVQQQGLTVTKSQTDFLMVVGLYDRTDAASQADISDYLVNHFQDAIARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP RL  +    + +       N        G     +  
Sbjct: 171 DGVGSSQIFGSQ-YAMRVWLDPYRLATVKLMPSDVQSAIAAQNVEVSAGQIGADPAPEGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +             +       
Sbjct: 230 QLNATVTARARL-------------QTPEQFRNIIVKTQSDGSVVHLSDVARVELGNESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +              T E        L A                    
Sbjct: 277 TSSARLNGHPASGMALQLAPGADALKTAELVKARVEELSADLPHGYTVTYPRDTTPFIKL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV++V+F+ +   +  LV   ++ + ++ T  +L+L G ++   ++
Sbjct: 337 SVEEVVQTLIEAVGLVVVVMFVFLQSWRATLVPAIAVPVVLLGTFGVLALFGYSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +      +  S   +         S +    +      + 
Sbjct: 397 FGMVLAIGLLVDDAIVVVENVERIMEEEGLSPRDATIKSMEEIGSALIGIALVLSAVLLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDI 525
           + FFGG      R F+IT+  S+L+S+  A+ +  A+   I                 + 
Sbjct: 457 MAFFGGSTGVIYRQFSITIVSSMLLSVVVALILSPALCATILKPVSHEHRDRGWTGRFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +     R   + +G + +  +  +  +        ++ +G + + V  
Sbjct: 517 WFGRVTDGYMTRLNGFIGRRTLFWIGYAAMLGLLWLLFVRLPTSFLPVEDQGQVMVQVTL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                 S   + ++ +Q    + +  + +  F+ +     G      +    +       
Sbjct: 577 PAGAKSSRTSAAVDQIQNYFTNDEKDNVDFIFVTQGFSFAGQGENTAQGFVSLAPWDKRK 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVG 672
              +          K    +     + 
Sbjct: 637 GAANGATMIANRATKQLAAIRDAKALA 663



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 15/134 (11%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
            W   L     + + +  T G  ALFG   N   +  ++  IG  V+D +VV    +R+ 
Sbjct: 362 SWRATLVPAIAVPVVLLGTFGVLALFGYSINTLTLFGMVLAIGLLVDDAIVVVENVERIM 421

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
           +        +S RD   KS+ E     +  ++     +LPMA +GGS       F+I   
Sbjct: 422 EE-----EGLSPRDATIKSMEEIGSALIGIALVLSAVLLPMAFFGGSTGVIYRQFSIT-- 474

Query: 803 FGIVVAASSSIFIA 816
             IV +   S+ +A
Sbjct: 475 --IVSSMLLSVVVA 486



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 75/225 (33%), Gaps = 9/225 (4%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
             ++G+  + ++ Q  PG S  +     +  +K                      +     
Sbjct: 816  RYNGQSAYEIQGQAAPGSSSGEAMDEMVRLQKQLPPGTGYAWSGLSYQEQLSGGQAPLLY 875

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             + V++  + +     +   W   L  +  + L +   +    L G+E N+     +LT 
Sbjct: 876  GLSVLVVFLCLA---ALYESWSIPLAVLLVIPLGLIGAVLAVTLRGLENNIYFQVGLLTT 932

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G +  + +++ +     +  Y           ++        + TS+A    V+P+A+ 
Sbjct: 933  MGLAAKNAILIVE--FAELA-YLQGKDAMSAALEAARLRFRPILMTSLAFIAGVIPLAIA 989

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    +  G++ A   +IF      L I     +  
Sbjct: 990  SGAGAQSRVAIGTAVVGGMLTATVLAIFYVPLFFLTIVRIFNRKN 1034


>gi|323528451|ref|YP_004230603.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Burkholderia sp. CCGE1001]
 gi|323385453|gb|ADX57543.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1001]
          Length = 1061

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 67/548 (12%), Positives = 155/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G++        +  +  +P  +P + +          H       
Sbjct: 10  RPIFAGVLSVLVLLAGVISLF-----KLPISEYPEVVPPSVV---------VHAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAEAVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTNPDLATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGVTTIKSSPTLTMVVHLISPNDRYDMTYLRNYALLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   T  ++       N      + G          Q 
Sbjct: 176 QVQLWGSGDYAMRVWLDPQKVAQRGLTATEVVNAIREQNIQVAAGVIGASPSVPGTQLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      I    +      
Sbjct: 236 SVNARGRLRTE-------------GEFGNIIVKTAPDGGVTYLRDIARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +        L           +          S   
Sbjct: 283 LLDNKPAVALAINQAPGANSLAISDEVRSAMKELAQDMPAGVEYRIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLSARDATYKAMQEVSGPIIAIALTLVAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   ++R    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAMLLRSHGAKEDFLTRVMNRVLGRFFK 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSVLSALAGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGHTPLSAAIEASRLRLRPILMTSIAFIMGVVPLVLSTGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 78/201 (38%), Gaps = 9/201 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      ++ + + +   V    + +           ++   +  + +  I +++++   
Sbjct: 306 SDEVRSAMKELAQDMPAGVEYRIVYDPTQFVRSSIEAVVHTLLEAIALVVIVVIVFLQTW 365

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N
Sbjct: 366 RASIIPL---IAVPVSIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           +      +S RD   K++ E  G  +  ++      +P+A      G     FA+ +A  
Sbjct: 423 I---ENGLSARDATYKAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIS 479

Query: 805 IVVAASSSIFIAAPILLFIYD 825
            V++A +S+ ++  +   +  
Sbjct: 480 TVISAFNSLTLSPALSAMLLR 500


>gi|257139189|ref|ZP_05587451.1| multidrug efflux protein [Burkholderia thailandensis E264]
          Length = 878

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/622 (11%), Positives = 171/622 (27%), Gaps = 41/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+            + ++P   P   +SL        +       
Sbjct: 8   RPVFAWVISLFIMLGGIFAI-----RALPVAQYPDIAPP-VVSL--------YATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +        +    Q  ++L+F      +  A  V   L+ V
Sbjct: 54  AQVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      + + ++     +      +E         +  +   E   +
Sbjct: 114 EARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASANVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     ++                                +      I            
Sbjct: 233 VLADAPLT-------------TPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSF 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L     P     +          S S  
Sbjct: 280 VNGKTATGMGIKLAPGSNAVATEKRVRATMDELAKFFPPGVKYQIPYETASFVRVSMSKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+F+ +   +  L+    + + ++ T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLVEAGVLVFAVMFLFMQNFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529
              G   R FA  + +SI  S F A+S+  A+   +++                +     
Sbjct: 460 GAVGNIYRQFAFALAVSIGFSAFLALSLTPALCATLLKPVADDHHEKDGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R   W V    L +  ++ +          + +G   + V+  +  
Sbjct: 520 STHRYTQRVGRVLKRPLRWLVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNF 611
            L+    ++  ++    +    
Sbjct: 580 PLAETMQSVRRVEEYVRTHSPS 601



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 71/203 (34%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    ++ + K     V       T         +++   +   ++    M +++ 
Sbjct: 300 ATEKRVRATMDELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +   +   K++ +  G  V  ++      +PMA +GG+V      FA  +A
Sbjct: 416 -ERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497


>gi|298492750|ref|YP_003722927.1| protein-export membrane protein SecF ['Nostoc azollae' 0708]
 gi|298234668|gb|ADI65804.1| protein-export membrane protein SecF ['Nostoc azollae' 0708]
          Length = 320

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 79/310 (25%), Positives = 152/310 (49%), Gaps = 24/310 (7%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-------------- 583
           + ++  +AR     IS    +  I  +     N  I       L                
Sbjct: 1   MTLRINKARSIWWTISAAIILSGIISMVISSQNPNIKAPLRPSLDFIGGTRLQLVRDCSQ 60

Query: 584 --LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL-VRLQYQPGDSVAQTRVLEMVKK 640
               ++P+D++ VR   +   +GD S Q          + ++ +  ++  +T +   + +
Sbjct: 61  LGNCDKPIDINTVREVAKDQGLGDSSIQLISENGQENGITIRTKNLETEQRTNLQNALSE 120

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           KI            + VGP + REL R G++ +++S   + IY+ +RF+  +A+ AI  L
Sbjct: 121 KIGAFDL--QKNQIDSVGPTLGRELFRSGVLALVVSFTGITIYMSLRFQVDYAIFAIVAL 178

Query: 701 ILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             DI  T+G F++ G    IE +   + A+LT+ G+SVND VV+YDR+R+ +K+      
Sbjct: 179 FHDILVTVGAFSILGLVAGIEVDSLFIVALLTITGFSVNDTVVIYDRIRETLKINPDR-P 237

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             D++D ++N+TL RS+ T++   +++  + ++GG  + +F++ +  G ++ A SSIFIA
Sbjct: 238 IADIVDDAVNQTLSRSINTTLTTLLTLTAIFLFGGETLRNFSLALIIGFLMGAYSSIFIA 297

Query: 817 APILLFIYDW 826
           + +L    + 
Sbjct: 298 STLLTLWRER 307


>gi|331672821|ref|ZP_08373607.1| multidrug efflux protein [Escherichia coli TA280]
 gi|331070042|gb|EGI41411.1| multidrug efflux protein [Escherichia coli TA280]
          Length = 1015

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/670 (10%), Positives = 179/670 (26%), Gaps = 39/670 (5%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
              G+L           + ++P   P   I                   + +   +    
Sbjct: 1   MLAGILAI-----RTLPVAQYPDVAPPT-IK--------ISATYTGASAETLENSVTQVI 46

Query: 75  DELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           ++  + L         S       I ++F      +    +V   +Q   S+L  + ++ 
Sbjct: 47  EQQLTGLDNLLYFSSTSSSDGSVSINVTFEQGTDPDTAQVQVQNKIQQAESRLPSEVQQT 106

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +     +   ++++        + + + +  ++    D +   E              +
Sbjct: 107 GVTVEKSQSNFLLIAAVYDTTDKASSSDIADWLVSNVQDPLARVEGVGSLQVFGA-EYAM 165

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP++L       + +       N        G     ++      V  +  +    
Sbjct: 166 RIWLDPAKLASYSLMPSDVQSAIEAQNVQVTAGKIGALPSPNTQQLTATVRAQSRL---- 221

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                        +    I   +             +            L          
Sbjct: 222 ---------QTVDQFKNIIVKSQSDGAVVRIKDVARVEMGSEDYTAIGKLNGHPSAGVAV 272

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
                 +   T        A  +            + +      S      T      LV
Sbjct: 273 MLSPGANALNTATLVKDKIAEFQRNMPQGYDIAYPKDSTEFIKISVEDVIQTLFEAIVLV 332

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           + V+++ +   +  L+   ++ + ++ T  +L+L G ++   ++  +VL IGL VD  I+
Sbjct: 333 VCVMYLFLQNLRATLIPALAVPVVLLGTFGVLALFGYSINTLTLFAMVLAIGLLVDDAIV 392

Query: 434 VNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           V E +    R        + +         +    +      + + FFGG      R F+
Sbjct: 393 VVENVERIMRDEGLPAREATEKSMGEISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFS 452

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDINPLSRFFLIPDCIAIQFMRAR 546
           IT+  ++L+S+  A+++  A+   ++++                               R
Sbjct: 453 ITIISAMLLSVVVALTLTPALCGSVLQHVPPHIKGFFGAFNRFYRRTEDKYQRGVIYVLR 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLSVVRSNLESLQIGD 605
                + +   +     L    L           ++ V    P   +  R+   + QI D
Sbjct: 513 RAARTMGLYVVLGGGMALMMWKLPGSFLPTEDQGEIMVQYTLPAGATAARTAEVNRQIVD 572

Query: 606 ISFQNFDGEKNFLVRLQ--YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
               N     + +  +      G           +K         +T Q   +   K   
Sbjct: 573 WFLINEKANTDVIFTVDGFSFSGSGQNTGMAFVSLKNWSQRKGAENTAQAIALRATKELG 632

Query: 664 ELIRKGIVGV 673
            +    +  +
Sbjct: 633 TIRDATVFAM 642



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       +      +        +  +     +++    +++    +    +P 
Sbjct: 241 VRIKDVARVEMGSEDYTAIGKLNGHPSAGVAVMLSPGANALNTATLVKDKIAEFQRNMPQ 300

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + + ++  +++  +     L     + + +  T
Sbjct: 301 GYDIAYPKDSTEFIKISVEDVIQTLFEAIVLVVCVMYLFLQNLRATLIPALAVPVVLLGT 360

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 361 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 418

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LPMA +GGS       F+I     I+ A   S+ +A  +
Sbjct: 419 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSIT----IISAMLLSVVVALTL 469



 Score = 42.4 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 72/246 (29%), Gaps = 9/246 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +                 G      ++G   + ++ +   G S              
Sbjct: 766  VRGSDNAMTPFSAFATTRWLYGPERLVRYNGSAAYEIQGENATGFSSGDAMTKMEELANS 825

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    V +++  + +     +   W      I  + L
Sbjct: 826  LPAGTTWAWSGLSLQEKLASGQALSLYAVSILVVFLCLA---ALYESWSVPFSVILVIPL 882

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        +  +  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 883  GLLGAALAAWMRDLNNDVYFQVALLTTIGLSSKNAILIVE-FAE--AAVAEGYSLSRAAL 939

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A    V+P+A+    G +   +    +  G + A   +IF     
Sbjct: 940  RAAQTRLRPIIMTSLAFIAGVMPLAIATGAGANSRIAIGTGIIGGTLTATLLAIFFVPLF 999

Query: 820  LLFIYD 825
             + +  
Sbjct: 1000 FVLVKR 1005


>gi|227540207|ref|ZP_03970256.1| acriflavin resistance protein D [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239931|gb|EEI89946.1| acriflavin resistance protein D [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 1056

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/575 (13%), Positives = 163/575 (28%), Gaps = 41/575 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  +G +           + ++PS  P               + +  +
Sbjct: 8   KRPITAIVISILITILGTISVA-----TLPISQYPSIAPPT-------------VSVTAN 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKVT 116
                   ++      + S +    G+   S       Q++IT++F      +     V 
Sbjct: 50  YTGADAQTVEQTVTTPIESQINGTPGMIYMSSNSTSNGQSQITVTFEVGTDIDIATLDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  + T       ++L      +        S  I     D I  
Sbjct: 110 NRVGIAEPSLPEAVRRLGVTTRKANTDILMLVSLVSPKGTRDDKFLSNYINLYIKDAIMR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    D ++L  L  T A +S      N    G   G R    S
Sbjct: 170 VKGVGDATVFG-QPFSMRVWLDANKLSNLGLTPADVSNAIQEQNIRMPGGSVGGRPQESS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y +    ++S +                   I                 +      
Sbjct: 229 TVFEYPILTDGDLSNVE-------------DFEDIIVKANTDGSIVLLKDVARVELGQFS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                     V    + +     +   T +        L+         +V    +    
Sbjct: 276 YSTSTKTDGMVSTGMMINQTPGGNAVETADGIYKALEQLKKSFPDDVDYVVGYETISVVN 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F  +   +  L+   +I ++++ T     L G ++   +
Sbjct: 336 ASIESVIHTLLEALLLVTVVVFFFLQSWRATLIPVLAIPVSIVGTFIFFLLFGFSINNLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +   VL IG+ VD  I+V E ++      +     +         + +    +      V
Sbjct: 396 MLAFVLAIGIVVDDAIVVVEAVQHYIDHYKLDAKEATRRAMKDITAPVIAIALILSAVFV 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      + FAIT+ +S+++S F A+++  A+   ++R   +          FF
Sbjct: 456 PVGFIPGMVGKLYQQFAITIAVSVMLSAFIALTLTPALCSLMLRPTSVNKEARGLNKFFF 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                      R             +  I LL   
Sbjct: 516 KFNVWFEKVTNRYSKGVQQCIRKAPLVLIILLCIF 550



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 67/168 (39%), Gaps = 10/168 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLT 728
            +I +   + +++ +      W      + ++ L +    L    +  ++ N+ A   ++T
Sbjct: 874  MIFALCILFVFLLLASLYESWSVPFSILLSVPLGVFGAILTLILIPRLDNNIFAQIGLVT 933

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +IG +  + +++ +  ++        ++  +    ++   L   + TS+A  + ++P+ +
Sbjct: 934  IIGLAAKNAILIVEFAKE---RVDIGMNLIEATLDAVKLRLRPIIMTSLAFILGIIPLML 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G     +    +  G+  A   +IFI   + + I        ++
Sbjct: 991  STGAGAVSRQTIGWTVFGGMAAATFLAIFIVPVLFVVITRMAYGKKKL 1038



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V            S +        ++  Q   G++V     +    +++ +  
Sbjct: 259 SIVLLKDVARVELGQFSYSTSTKTDGMVSTGMMINQTPGGNAVETADGIYKALEQLKKSF 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P             +    I   I  ++ + + + + ++     W   L  +  + + I 
Sbjct: 319 PDDVDYVVGYETISVVNASIESVIHTLLEALLLVTVVVFFFLQSWRATLIPVLAIPVSIV 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  FF LFG   N   + A +  IG  V+D +VV + ++  +  Y   +  ++   +++
Sbjct: 379 GTFIFFLLFGFSINNLTMLAFVLAIGIVVDDAIVVVEAVQHYIDHY--KLDAKEATRRAM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLF 822
            +     +  ++      +P+    G V      FAI +A  ++++A  ++ +   +   
Sbjct: 437 KDITAPVIAIALILSAVFVPVGFIPGMVGKLYQQFAITIAVSVMLSAFIALTLTPALCSL 496

Query: 823 IYD 825
           +  
Sbjct: 497 MLR 499


>gi|313837769|gb|EFS75483.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL037PA2]
 gi|314927349|gb|EFS91180.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL044PA1]
 gi|314972706|gb|EFT16803.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL037PA3]
 gi|328907434|gb|EGG27200.1| export membrane protein SecF [Propionibacterium sp. P08]
          Length = 391

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 147/312 (47%), Gaps = 11/312 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L    I+  F+  R     ++ +  + S+  L   GLN GI+FKGG+Q   
Sbjct: 25  KRRHGFTHALYTGEISYGFIERRKVWYTVTAIIIVISLIGLLVRGLNLGIEFKGGVQFRA 84

Query: 584 LANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            A+     +  VR  + S    D+         +  V++Q +   S   T+V E + K  
Sbjct: 85  PAHVAASTIDDVRKLVLSSGAPDMDATEVVSLGSDAVQVQTRALTSDETTKVQEAIAKA- 143

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                 ++      VG +   ++  K I  +++  + +++ IW  F+ W  ++ A+  L+
Sbjct: 144 --TGTKTSSVAYSKVGSQWGEQITSKAIKALVVFLVLVMLQIWAYFRHWKMSIAALIALV 201

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDL 760
            D+  T+G +AL G   + + V  +LT++GYS+ D VVV+D++R+N++       +F + 
Sbjct: 202 HDLIVTIGIYALVGFTVSPSTVIGLLTILGYSLYDTVVVFDKVRENVQDIEKRDYTFAEG 261

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            +++IN+ L RS+ T++   + V  +      V G   +    + +  G++V A SSIFI
Sbjct: 262 ANRAINQVLVRSINTTIVGVLPVASLLFAGAFVLGSGPLEDLGLALFVGMIVGAYSSIFI 321

Query: 816 AAPILLFIYDWR 827
           A P+   + +  
Sbjct: 322 ATPVFTQLRELE 333


>gi|261250923|ref|ZP_05943497.1| protein-export membrane protein SecF [Vibrio orientalis CIP 102891]
 gi|260937796|gb|EEX93784.1| protein-export membrane protein SecF [Vibrio orientalis CIP 102891]
          Length = 300

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 146/288 (50%), Gaps = 6/288 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               +  R R+    +SI   + S+  L  +GLN G+DF GG+   V  +  V    + +
Sbjct: 4   FFKQRIRRIRYITSFVSIALMVVSLIALAANGLNMGLDFTGGMVTEVKVDNNVTHQQLVN 63

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L+       +  + D +  +++R                 + + +  I     + +  +
Sbjct: 64  TLQPELGEFTNVTHSDQDGRWVIRYPIPAQGDEVAD-----LTQTLAPISHQVEVISNSM 118

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG ++ ++L+ +G + ++IS +++L Y+  RF+W  A G++  L+ D+   LGFFA   +
Sbjct: 119 VGSQVGQDLVDQGGLALLISMMSILGYLCFRFEWRLASGSLLALVHDVVLVLGFFAATQM 178

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT  AA+L ++GYS+ND +++ DR+R+ + L   +    ++ D+++  T  R++ TS
Sbjct: 179 EFNLTVFAAILAILGYSLNDSIIIADRIRE-LLLAKQTTPTEEINDQAVLATFSRTMVTS 237

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               ++V  + + GGS +  FAI M  GI+    SSI I   +  ++ 
Sbjct: 238 GTTLMTVSALWIMGGSALQGFAIAMFIGILSGTWSSISIGTVLPEWLK 285


>gi|160875776|ref|YP_001555092.1| acriflavin resistance protein [Shewanella baltica OS195]
 gi|160861298|gb|ABX49832.1| acriflavin resistance protein [Shewanella baltica OS195]
 gi|315267965|gb|ADT94818.1| acriflavin resistance protein [Shewanella baltica OS678]
          Length = 1031

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/629 (11%), Positives = 177/629 (28%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISLLLVAFGLVS-----FDKLPLREYPNIDPPVV---------SIDTNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F  SR  E+ A+ V   + G
Sbjct: 55  SAAVVESRITQLIEDRISGVEGIRHVSSSSSDGRSSVTLEFDISRNIEDAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +      +  I+      D      +E +    R   D+  + +   
Sbjct: 115 LLDNLPEEADPPEVQKANGGDEVIMWLNLVSD--QMTTLELTDYTNRYLADRFSVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 RMRIGGGKVYAMRIWLDRQALASRSLTVADVEAALRAENVELPAGSIESKERHFTVRLE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RGYRTAEDFANLVITQGEDGYLVKLGDVARVEIGSEEERIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +      +   L   +               +      S   
Sbjct: 274 RGNKEAMIGLGVSKQSTANTLEVARSVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFTAMILVIIVIYLFLGSVRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+TM  ++L S   A+++   M   +          ++ +D         
Sbjct: 454 GDLGKLFKEFAVTMSAAVLFSSIVALTLTPMMCSKLLKPSSQDSWLVRKVDGIMTKVSNR 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           V + I     +  +          + +G + L V   +      
Sbjct: 514 YQLSLKSAMAHPLLMSVLVLIALGSSAYLVQKVPQEFAPQEDRGSLFLMVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           + S +  ++   +   +    K  L+R  
Sbjct: 574 IESYMNEVENRLMPLVDTGDIKRLLIRAP 602



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 69/189 (36%), Gaps = 9/189 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             +++ +   +   + +    ++ +      +E+ +     +I+  I + +++       
Sbjct: 301 NALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMILVIIVIYLFLG---SVR 357

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L    T+ + +  T       G   NL  + A++  IG  V+D +V+ + +    +  
Sbjct: 358 AMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIH---RRI 414

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVA 808
               S          E     + T++      +P+    G    +   FA+ M+  ++ +
Sbjct: 415 EEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVLFS 474

Query: 809 ASSSIFIAA 817
           +  ++ +  
Sbjct: 475 SIVALTLTP 483



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 60/156 (38%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L    L G   N+ +   ++ L+G 
Sbjct: 860  LLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGALIGLWLTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++  + L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVDFDKAIIQASAQRLRPILMTGITTAAGAVPLVMAAGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +  GI++A   +IF+          
Sbjct: 977  GAETRFVIGVVVLSGILLATLFTIFVIPAAYGLFAR 1012


>gi|291614459|ref|YP_003524616.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sideroxydans lithotrophicus ES-1]
 gi|291584571|gb|ADE12229.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sideroxydans lithotrophicus ES-1]
          Length = 1048

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/520 (12%), Positives = 145/520 (27%), Gaps = 40/520 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L    +  +PS  P               L + +  
Sbjct: 9   RPIFAWVIALIILLSGILA-----LRNLPVASYPSVAPPA-------------LAITLSY 50

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG---IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  ++      +   L           S  Q +  ITL+F      +  + +    
Sbjct: 51  PGASAQVVEQTAVALVEQELNGIEHLLYMDSSSEQGRGTITLTFEADTDLDVASVETQNR 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++   ++L  + ++  +         ++             +     +    ++ I    
Sbjct: 111 VKRAEARLPDEVRRAGITVAKSARNYLMFIALISPDKSRDNVALGSYMAANILENIQRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              + +        +     P RL+    +   +S      N        G         
Sbjct: 171 GVGEAVLFGT-EYSMRLWLKPERLQAYNLSPGDVSAAVRAQNTQLATGELGDLPAEPRQQ 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              ++  K  +S                +    I                 +        
Sbjct: 230 LNAVIVTKSRLS-------------TPEEFGNIIVRANPDGSTVRVKDVARVELGAQDYS 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +     +          +   T +        L          +V          S
Sbjct: 277 IAARIDGQPASAIAIRLSPSANALDTAKAVKDKMTELAKYFPKGIDWLVPYDTSKFVEIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV IV+++ +   +   +    + + ++  L  L  +G ++   ++ 
Sbjct: 337 IHEVVKTLGEAMVLVFIVIYLFLGNLRATFIPAIVVPVALVGGLVGLYAVGYSINTLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL +G+ VD  I+V E +      +  S   +      + +  I    +      V +
Sbjct: 397 AMVLAVGIVVDDAIVVVENVERIMTEEGLSPRDATRKAMGQIFGAIIAITLVLCAVFVPM 456

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            FFGG      R FA+T+ L+IL S+  A+++  A+   +
Sbjct: 457 TFFGGSVGAIYRQFAVTLILTILFSVLMALTLTPALCAVL 496



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 82/204 (40%), Gaps = 10/204 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    +  + K   + +      +T         E+++     +++  I + +++ 
Sbjct: 301 DTAKAVKDKMTELAKYFPKGIDWLVPYDTSKFVEISIHEVVKTLGEAMVLVFIVIYLFLG 360

Query: 686 -IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            +R  +  A+     L   +   +G +A+ G   N   + A++  +G  V+D +VV + +
Sbjct: 361 NLRATFIPAIVVPVAL---VGGLVGLYAV-GYSINTLTLFAMVLAVGIVVDDAIVVVENV 416

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
                +    +S RD   K++ +  G  +  ++      +PM  +GGSV      FA+ +
Sbjct: 417 --ERIMTEEGLSPRDATRKAMGQIFGAIIAITLVLCAVFVPMTFFGGSVGAIYRQFAVTL 474

Query: 802 AFGIVVAASSSIFIAAPILLFIYD 825
              I+ +   ++ +   +   +  
Sbjct: 475 ILTILFSVLMALTLTPALCAVLLK 498



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             +      +S +A+ + +   ++ W   +  I  + + I   L    + G+  ++     
Sbjct: 867  NQAPFLFGLSVVAVFLCLAALYESWSIPVAVILVVPIGILGALSAVYMRGLTNDVYFKVG 926

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ +IG +  + +++   ++  + L        +   ++        + TS+A  + V+P
Sbjct: 927  LIVIIGLAAKNAILI---IQFALDLQRRGHDLLEATLEASRLRFRPILMTSIAFVLGVMP 983

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAA 809
            + +    G +   +    +  G++ A 
Sbjct: 984  LVISTGAGANGRHAIGTGVMGGMISAT 1010


>gi|29346296|ref|NP_809799.1| putative cation efflux pump [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568284|ref|ZP_04845695.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29338191|gb|AAO75993.1| putative cation efflux pump [Bacteroides thetaiotaomicron VPI-5482]
 gi|251842357|gb|EES70437.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 1048

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/683 (11%), Positives = 184/683 (26%), Gaps = 47/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVA-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGLPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSVAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSKDSVYNSLYLTNYAKLNLVDQLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
                          +    DP  +R    + A++       N        G    +D+ 
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPAQVYQSIQSQNMEVSAGYIGQPIGQDNK 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  +                 +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRL-------------ISPEQFGNIIIRREQDGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YSVVSRLKGMPTAAIAIYQQPGSNSLDVSKGVKAKMEELATSFPTGVAYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSTREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN------ 526
            T+++    G   + FA+T+  S ++S F ++++  A+    ++  K  +  I       
Sbjct: 458 PTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLKKSKPSNFFIYKGFNKA 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R     V  +IL  I  I  +         +  G     V   
Sbjct: 518 YDKTQGVYDSTVKWLLQRPLISFVSFAILTVIAVILFMRWPSTFIPDEDDGYFIAVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   ++  + +     S+   +             G+         ++K       
Sbjct: 578 PAASLERTQAVGDKINAILDSYPEVENYIGITGFSVMGGGEQSNSATYFVVLKNWDERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
              T           +   I+ G
Sbjct: 638 KEHTAAAVVDRFNGEAYMEIQAG 660



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/450 (9%), Positives = 117/450 (26%), Gaps = 27/450 (6%)

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            A+L           I G  +  G    ++      ++  + +      +  +        
Sbjct: 594  AILDSYPEVENYIGITGFSVMGGGEQSNSATYFVVLKNWDERKGKEHTAAAVVDRFNGEA 653

Query: 463  IFDSNITALIATVVLFFFGGGAVRGFAI---------TMGLSILISMFTAISIVRAMMIF 513
              +       A V     G GA  G  +            +   I    A S  +  +  
Sbjct: 654  YMEIQAGQAFAMVPPAIPGLGASGGLQLQLEDRRNLGPTEMQQAIDALLASSHSKPALAS 713

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
            +    +              +                 +   +    +     + +    
Sbjct: 714  VSSQYQANVPQYFLNIDRDKVQFMGIALNDVFSTLSYYMGAAYVNDFVEFGHIYQVKIEA 773

Query: 574  DFKGGIQL-------GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
              +    +          +   +      + +E     D   +        L        
Sbjct: 774  RDQAQRVIDDVLKLSVANSAGEMVPLSSFTKVEEQLGQDQINRYNMYSTAALTCNVAPGS 833

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             S    + +E + K+           +      +         ++ +I++    L+    
Sbjct: 834  SSGQAIQEMETLFKEQLGDEFGYEWTSVAYQETQAGNTTTIVLVMALIVAF---LVLAAQ 890

Query: 687  RFKWYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   + A+  L + +    +G   + G   ++     ++ L+  S  + +++ +  R
Sbjct: 891  YESWTSPVAAVIGLPVALLGAMIGCM-IMGTPVSVYTQIGIILLVALSAKNGILIVEFAR 949

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
                      S R+   ++ +  L   + TS A  + V+P+      G     +    + 
Sbjct: 950  DFRAE---GNSIREAAYEAGHVRLRPILMTSFAFVLGVMPLLFATGAGAQSRIALGTAVV 1006

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            FG+ +    +          +   + K +R
Sbjct: 1007 FGMAMNTLLATVYIPNFYELMQKLQEKFSR 1036



 Score = 40.8 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 77/245 (31%), Gaps = 9/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S           +  Q           V   +++  T        
Sbjct: 267 DIARIDLGSASYSVVSRLKGMPTAAIAIYQQPGSNSLDVSKGVKAKMEELATSFPTGVAY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  TL   
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVVLVIFLFLQNWRAVIIPCITIPVSLIGTLAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSTREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +       
Sbjct: 443 GPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLKK 502

Query: 827 RAKNA 831
              + 
Sbjct: 503 SKPSN 507


>gi|257457343|ref|ZP_05622514.1| protein-export membrane protein SecF [Treponema vincentii ATCC
           35580]
 gi|257445265|gb|EEV20337.1| protein-export membrane protein SecF [Treponema vincentii ATCC
           35580]
          Length = 413

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 126/244 (51%), Gaps = 3/244 (1%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +P+D   VR  L S+    +       ++ F +RL      + A   +  ++   +    
Sbjct: 151 QPIDADEVRHALASIPSVSVQQIGEARDRTFQIRLPDNGTYTNANAELRALINTALVNAY 210

Query: 647 PLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             +     +T+ VG + S  L R+ ++ V+ +   +  Y  +RF+W FALGA+  L+ D+
Sbjct: 211 EANNFAVLSTDFVGSRFSGSLARQAVLLVVGALFLIFFYALVRFRWTFALGAVLALVHDV 270

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              L F     +EFN T +AA+LT++GYS+ND VVV+DR+R+N++L    +S  +++D +
Sbjct: 271 LIMLTFIVWTQMEFNSTTIAAILTIVGYSINDTVVVFDRIRENIRLNPK-LSLIEVLDLA 329

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             E L R++ T++   ++ + + ++    +  FA+ +  G+     S+I+IA   + F  
Sbjct: 330 QTEVLSRTIITTVTTMLAAVSLYIFTTGTMKDFALALLVGMTSGVYSTIYIAGACITFFS 389

Query: 825 DWRA 828
             + 
Sbjct: 390 GKKQ 393


>gi|220927990|ref|YP_002504899.1| protein-export membrane protein SecF [Clostridium cellulolyticum
           H10]
 gi|219998318|gb|ACL74919.1| protein-export membrane protein SecF [Clostridium cellulolyticum
           H10]
          Length = 327

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 149/314 (47%), Gaps = 28/314 (8%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV--------------- 589
            R++   +S L  +  + + F  G    I+F+GG  + + AN  +               
Sbjct: 7   KRYYFFILSALIILAGVAMYFVEGFKLDIEFEGGTIIEMRANEKMFTAANTQDLQTQIAD 66

Query: 590 ----DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                ++      +S        +N +      + +  +   S ++   +E    K  ++
Sbjct: 67  FVTETINKPAKVQKSTAYDVSKNKNAESFDVITISIGSKDTLSNSELTKVEEAVVKEFKL 126

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLI 701
                + + E V P I +E++  G+  ++I+ I +++Y+W RFK        + AI  + 
Sbjct: 127 TAKDPVVSEESVEPYIGKEIMNNGLKAIVIAFILIILYVWYRFKAMSGLSAGVFAIVGVF 186

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            D+   L  + +F I  N + +AA+LT++GYS+ND V++YDR+R+N +L    I   +L+
Sbjct: 187 HDLLIMLAVYVVFQIPLNESFIAAMLTVVGYSMNDTVIIYDRIRENNRLLRK-IPLPELV 245

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           + SI +TL RS+ T + + I++  + ++    G + +  F+ P+  GI     SSIFI++
Sbjct: 246 NSSIIQTLNRSINTVVTSLIAITTVYIFAKINGINSMEQFSFPLIIGIAAGCYSSIFISS 305

Query: 818 PILLFIYDWRAKNA 831
           P+ +   + + K  
Sbjct: 306 PLYVMWKESQKKKK 319


>gi|192292792|ref|YP_001993397.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris TIE-1]
 gi|192286541|gb|ACF02922.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris TIE-1]
          Length = 1050

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 82/617 (13%), Positives = 168/617 (27%), Gaps = 50/617 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       P   + ++P+  P               + +  + 
Sbjct: 8   RPVFAWVVAIFIMIAGALAI-----PFLPVAQYPNIAPAK-------------ISVTANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
               +  + Q     +   L    G+  F        Q  I +SF            V  
Sbjct: 50  PGASSEEIYQGVVRLIEDQLAGIPGLMYFESTTDATGQISIEVSFQPGTSLAQATVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V S+L     +  ++        ++            +I     I R  I +I   
Sbjct: 110 RIRRVESRLPSAVTQRGILVDEASSTFLMFISVQTTDGSLDSIAVGDYITRNIISEIRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +               DP RL  +  T + +S      N        G      S 
Sbjct: 170 EGVGKAQLFGTQRSM-RVWIDPDRLFGVGLTVSDVSAAIAAQNAQVAAGRIGATPNPVSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K ++                 +    +                 +       
Sbjct: 229 EVTAPVLVKGQLG-------------TPEEFGAIVLRANRDGSSVRLRDVARVEVGGEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             A  +   T          L           +          
Sbjct: 276 NSESRLNGQPAASIGVQLSATANALATSRAVTAKMKELSQYFPKGMTYEIPYDTTPFIKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+F+ +   ++ L+    + + ++ T A++   G ++ + ++
Sbjct: 336 SIEKVLYTLAEAIALVFVVMFLFLQNIRYTLIPTLVVPIALLGTCAVMFATGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +      +    I    +      + 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERLMATEGLSPREATIKAMKQIKGAIVGITLVLTAVFLP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSID 524
           + FF    G   R F++TM +SIL S F A+++  A+    ++                +
Sbjct: 456 MAFFPGAVGIIYRQFSLTMVVSILFSSFLALTLTPALCATFLKPVPDDHHEKGGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                      + +     R     V    L +      L         + +G + + + 
Sbjct: 516 RTFARIAGRYRNGVGWATGRTGRLMVVYLALLAGLGWAYLRLPASFLPTEDQGYLIVDMQ 575

Query: 585 ANRPVDLSVVRSNLESL 601
           A      +   +++E  
Sbjct: 576 APTEATQTRAMTSIEQA 592



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 89/240 (37%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V       +  +   +        +        +++A +R +    K+++
Sbjct: 255 RDGSSVRLRDVARVEVGGEDYNSESRLNGQPAASIGVQLSATANALATSRAVTAKMKELS 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               +  I K +  +  +   + + +++  +   + L     + +
Sbjct: 315 QYFPKGMTYEIPYDTTPFIKASIEKVLYTLAEAIALVFVVMFLFLQNIRYTLIPTLVVPI 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  + A++  IG  V+D +VV + +     + T  +S R+   
Sbjct: 375 ALLGTCAVMFATGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERLMATEGLSPREATI 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++ +  G  V  ++      LPMA + G+V      F++ M   I+ ++  ++ +   +
Sbjct: 433 KAMKQIKGAIVGITLVLTAVFLPMAFFPGAVGIIYRQFSLTMVVSILFSSFLALTLTPAL 492



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  + L +   L    L  +  ++     ++ +IG S  + +++ +  +   
Sbjct: 887  SWSIPLSVMLVVPLGVIGALLAVMLRDMPNDIYFKVGLIAIIGLSAKNAILIVEFAKD-- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
             L+    S R+   ++        + TS+A  + V P+A   G       +    +  G+
Sbjct: 945  -LHAEGKSLREAAIEAAAVRFRPIIMTSLAFILGVTPLAFASGVSAGSQNAIGTGVFGGM 1003

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            + A   ++       +F+     +  
Sbjct: 1004 LSATVLAVLFVPVFYVFVLQKVEQRK 1029


>gi|154174145|ref|YP_001408526.1| preprotein translocase subunit SecD [Campylobacter curvus 525.92]
 gi|153793053|gb|EAU00396.2| protein-export membrane protein SecD [Campylobacter curvus 525.92]
          Length = 521

 Score =  180 bits (455), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 165/517 (31%), Positives = 275/517 (53%), Gaps = 35/517 (6%)

Query: 17  IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE 76
            G   ++P+FL               +ISLGLDL+GG H++L V+ D  ++  ++  +  
Sbjct: 14  FGFGFSMPSFLQTQSGA---------KISLGLDLQGGLHMLLGVETDKAIHSKIKSIAGS 64

Query: 77  LRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLV 136
           +  + KKE + +   +  ++ +  +  D+     +   +                  + V
Sbjct: 65  INYYAKKEDVLIDKFKIKEDSVEFALLDNDEVSKVDAALKEI-------------NGINV 111

Query: 137 TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP-- 194
                  +I L+       I +AI Q++E IR R+DQ G++E T+ R G   IL++LP  
Sbjct: 112 EKNGLSYTITLTDKERVDTIEYAISQAVETIRNRLDQFGLAEPTVARQGKDNILVELPGI 171

Query: 195 -GEQDPSRLRQLLGTTAKMSFHKVLP--------NNSKKGFMFGVRFLRD--SDGNQYLV 243
               D  R R L+   A +    V           +  +   +G     D   D  +Y++
Sbjct: 172 KTADDEQRARDLIAKAAHLQLMAVDDKRQDQARTMSPTEAESYGDVIYPDAKDDRIKYVL 231

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           ++   + G  L  A   F  + + P+++ + +  GAR F + T  N+GK LA+VLDG+V 
Sbjct: 232 KNIPVLDGAMLTDAKVAFSQQNNLPIINFTLNSEGARIFGDFTGANVGKRLAIVLDGKVY 291

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           +APVIN+ I  G  QISG FT++ A  +A  LR+G+L   + ++E+R++G  LG +SI +
Sbjct: 292 SAPVINERIGGGSGQISGGFTLDEAHDVAIALRSGALLAPVKMLEKRSIGPSLGQESINQ 351

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
              A+ AG + +VLFM+V YG  G+ A+ ++  +V++ +A+++L GATLTLP +AGIVL 
Sbjct: 352 SMMALAAGSIAVVLFMLVYYGISGVFANIALIADVVILVAVMALFGATLTLPGMAGIVLT 411

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           IG+AVD+N+++NERIRE  R   S+  ++  G+  A S I D+N+T +I   VL+ +G G
Sbjct: 412 IGMAVDANVIINERIRELLRDGVSIKTAVQKGYEHAMSAIIDANLTTIITVAVLYAYGTG 471

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            V+GFA+TM + I+ SM TAI     M    +   + 
Sbjct: 472 PVKGFAVTMSIGIIASMITAILGTHGMFDAFMEKIEK 508



 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 83/174 (47%), Gaps = 4/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP + +E I + ++ +   +IA+++++ + +     + A   LI D+   +   ALFG
Sbjct: 339 SIGPSLGQESINQSMMALAAGSIAVVLFMLVYYGIS-GVFANIALIADVVILVAVMALFG 397

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++ +R+R+ ++     +S +  + K     +   +  
Sbjct: 398 ATLTLPGMAGIVLTIGMAVDANVIINERIRELLRD---GVSIKTAVQKGYEHAMSAIIDA 454

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++   I+V  +  +G   +  FA+ M+ GI+ +  ++I     +     +   K
Sbjct: 455 NLTTIITVAVLYAYGTGPVKGFAVTMSIGIIASMITAILGTHGMFDAFMEKIEK 508


>gi|94986492|ref|YP_594425.1| preprotein translocase subunit SecF [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730741|emb|CAJ54103.1| Preprotein translocase subunit SecF [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 370

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 97/351 (27%), Positives = 160/351 (45%), Gaps = 49/351 (13%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLA 585
                 L      I F+  R     ISI+F +  I  +  +G + YG+DF GGI + +  
Sbjct: 1   MAMTIELFQRQTHINFVAKRHLAYIISIIFILIGIRTIIVNGGVRYGVDFAGGIAVQLQF 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++P++   ++  L  L +  ++ Q F  +    +        +    +            
Sbjct: 61  SQPIEDEHIKEALTKLNLPGLTIQQFGEDNKAYLVRFSSSEFNSMTIKSDISTILHTYSP 120

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK---------------- 689
               TIQ  E+VGPK+  +L    +  +  + + + IYI  RF+                
Sbjct: 121 SNPVTIQRLEVVGPKVGADLRNSALEAIFYAILLITIYISGRFEHRWIIAAGITGVLAAA 180

Query: 690 ------------------------------WYFALGAITTLILDITKTLGFFALFGIEFN 719
                                           FALGAI  L+ D+  T+G   L G EF+
Sbjct: 181 MYCMNLFDFSMVTKVVIALILTILLCWKLKLNFALGAIVGLLHDVLITVGLLTLMGKEFD 240

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINETLGRSVYTSM 777
           L  +AA+LTL+GYS+ND ++VYDR+R+N++       +   ++I+ SIN+TLGR++ TS 
Sbjct: 241 LNVIAALLTLVGYSLNDTIIVYDRIRENLQEQKQKNYLPLSNIINLSINQTLGRTIMTSF 300

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             F++   + + GG+VI  FA+ M  GI++   SSIF+A+PILL   D + 
Sbjct: 301 TTFVTAFSLFILGGTVIHDFALTMIIGIIIGTFSSIFVASPILLIFGDTQQ 351


>gi|27378982|ref|NP_770511.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
 gi|27352132|dbj|BAC49136.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
          Length = 1062

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/548 (10%), Positives = 149/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+           +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLIFLAGLISLF-----AMPISEYPDVVPPSVL---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +Q 
Sbjct: 56  PKVIAETVATPIEEQINGVEGMLYMSSQATTDGAMTLTVTFRLGTDPDKATQLVQNRVQQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  ++T        ++                   +    D++   +   
Sbjct: 116 AEPRLPAVVRQLGIITKKSSPDLTMVVHLLSPNGRYDMTYLRNYAVLNVKDRLARIDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +  +   T + +       N      + G          Q 
Sbjct: 176 DVQLYGAGDYSMRVWVDPQKAAEHGLTASDIVKSIQAQNVEAAAGVVGSSPNVKGIDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  ++                +    +                 I    +      
Sbjct: 236 SVNAEGRLANEE-------------QFGDIVVKTGARGEVVRLRDVARIELGASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A ++          +          S   
Sbjct: 283 LLDNKQAVAIPIFQAPGSNALQISDHVRATMAEIKKNMPEGVSYQIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T A++ + G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFAVMHVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLSPRDATYQAMREVSGPIIAIAMVLIAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++        +  +    L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAVNSLTLSPALSALLLKGHNEPKDRLTIIMEKGLGWFFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 GFNRAFTR 530



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLSIIMIVPMGLLAAMFGVWLSKGDNNVFTQIGLIVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TSMA  + VLP+ +    G  +  +  + +  G+
Sbjct: 960  -LEFAGRTPIRAAIEASRLRLRPILMTSMAFIMGVLPLVLSTGAGSEMRRAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      +F+     + + 
Sbjct: 1019 IGVTVFGLFLTPVFYVLLR 1037



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSIVGTFAVMHVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
                +S RD   +++ E  G  +       I+V     +     G     FA+ +A   
Sbjct: 425 A---GLSPRDATYQAMREVSGPII-AIAMVLIAVFVPLAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAVNSL 488


>gi|315617076|gb|EFU97686.1| inner membrane protein [Escherichia coli 3431]
          Length = 1014

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/640 (10%), Positives = 169/640 (26%), Gaps = 46/640 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKEG-- 85
           Q  + ++P+  P               + +  +        +Q      +   +      
Sbjct: 9   QLPVAQYPTIAPPA-------------VSVSANYPGADAQTVQDTVTQVIEQNMNGIDNL 55

Query: 86  --IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
             +   S       ITL+F      +    +V   LQ     L  + ++  +        
Sbjct: 56  MYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSS 115

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            ++++    D   +   + S  +     D +                  +    D   L 
Sbjct: 116 YLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ-YAMRIWLDADLLN 174

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           +   T   +     + N+       G             +  +                 
Sbjct: 175 KYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTR-------------FK 221

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +                      +            +                +   
Sbjct: 222 NPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALD 281

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T +      A L+         +           S      T      LV +V+++ +  
Sbjct: 282 TAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQN 341

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  L+   ++ + ++ T A+L+  G ++   ++ G+VL +GL VD  I+V E +     
Sbjct: 342 MRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLALGLLVDDAIVVVENVERVMM 401

Query: 444 KNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILIS 499
           +++     + +   S+    +    +      + + FFGG      R F+IT+  ++ +S
Sbjct: 402 EDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALS 461

Query: 500 MFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +  A+ +  A+   +           +       +           + +         + 
Sbjct: 462 VLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILGSTGRYL 521

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           +  +++ +   +  L         + +G     +           +  L+ +    +  +
Sbjct: 522 LIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTDYYLKNE 581

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             + E  F V      G +         +K         +
Sbjct: 582 KANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDEN 621



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 96/269 (35%), Gaps = 7/269 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V ++  V      + +E            +G+    + +
Sbjct: 212 ASIIAQTRFKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGI 271

Query: 622 QYQPGDSVAQT-RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T + ++    ++    P               +  I + +  +  + + +
Sbjct: 272 KLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLV 331

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  +G  V+D +V
Sbjct: 332 FLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLALGLLVDDAIV 391

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +     +    +  ++  +KS+++  G  V  +M      +PMA +GGS       
Sbjct: 392 VVENV--ERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQ 449

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F+I +   + ++   ++ +   +   +  
Sbjct: 450 FSITIVSAMALSVLVALILTPALCATLLK 478



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
             +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 835 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 894

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 895 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 952

Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 953 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 998


>gi|188585912|ref|YP_001917457.1| protein-export membrane protein SecF [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350599|gb|ACB84869.1| protein-export membrane protein SecF [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 305

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 137/282 (48%), Gaps = 3/282 (1%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R     +S++  +  +  L  +GLN GIDF GG  L +       +S VR  +    + 
Sbjct: 14  NRKIWFIVSLVILVIGLGSLMFNGLNVGIDFTGGTLLHIKIGEDYQVSEVRDIMGEHGLE 73

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           D   Q   G++      +               +     +  P S +  T+ VG  I  E
Sbjct: 74  DSVIQEAGGDEAEE--REVIIRTVSLNEEARNEIIDSFRDSWPESEVLRTDNVGGTIGSE 131

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L  +    ++I+++ M+ +I  RF++ FAL AI  +I D    L  F++F IE N   +A
Sbjct: 132 LRSEAFWALLIASLGMIAFISYRFEYRFALAAIAAIIHDAFIVLAVFSIFQIEINEPFIA 191

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LT+IGYSVND +VV+DR+R+ +  +   ++  + I  SI  TL RS+ TS+   + ++
Sbjct: 192 AILTIIGYSVNDTIVVFDRIRETL-KFEKKLTLFETIQISIKRTLKRSLCTSITTLLVLI 250

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + ++ G  I    I +  G++    SSIF+AA +   + + 
Sbjct: 251 SLFIFAGVTIRPLIIALLIGVISGTYSSIFVAANVWSILTEK 292


>gi|42519997|ref|NP_965912.1| preprotein translocase subunit SecD [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42409734|gb|AAS13846.1| protein-export membrane protein SecD [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 501

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 185/518 (35%), Positives = 296/518 (57%), Gaps = 26/518 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                      IC   L I LPNF    +       + K RI+LGLDL+GG+ L+L +D 
Sbjct: 4   RLIVKSFSVLCICLFALYITLPNFFDNKL------FISKKRINLGLDLKGGASLLLNIDL 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           D +    L M ++E++  L  + I   +++       ++       +  +  +       
Sbjct: 58  DFYFKEKLSMLANEIKETLLTKNI-ESNVQNS----VITLNSIDDYKKASVLIN------ 106

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                     NL +   +  I I    +  + +IS    +S+  +++R+D++G  E ++Q
Sbjct: 107 ------TINPNLELNRKDSSILISYKPHYKNSLISEVAAESINNVQRRLDKLGTKEVSVQ 160

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM--FGVRFLRDSDGNQ 240
           + G ++IL+Q+PG +D  +++ LLG TAK++FH    N +K   +       L+DS GN 
Sbjct: 161 KQGQNKILVQVPGVEDTKQIKSLLGKTAKLAFHLANTNIAKVQDIDHETTVMLKDSLGNS 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +  K EI G  L  A+  F      P V   FD + ++RF ++T++N+GKP A+VLD 
Sbjct: 221 YPIFRKTEIGGDSLVNASVRFGNLGK-PTVHFKFDSIASKRFAKITKENVGKPFAIVLDN 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            VLT P I + I +G+ +ISGNFT + A  LA +L++G+LP  L I+EE+N+G  LG +S
Sbjct: 280 TVLTVPTIREPILNGEGEISGNFTEKQASELAILLKSGALPAPLKIIEEKNIGPSLGEES 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  A    ++ + LF+I+ YGK G++A  ++F NV+L L++L+LL ATLTLP IAGI
Sbjct: 340 IKAGEMAATISIIAVALFIIITYGKLGVLASVALFSNVVLILSILTLLEATLTLPGIAGI 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+AVD+N+L+ ERIREE +  + V  +++ GF  A  TI DSNIT LIA  ++F  
Sbjct: 400 ALTVGMAVDANVLIFERIREEIKSGKRVERAIEEGFKNAIKTILDSNITTLIAAGIMFII 459

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           G GA+RGF++T+ + IL SMF+AI++ + ++   +  K
Sbjct: 460 GSGAIRGFSVTLSIGILCSMFSAITVTKLLIELCMNPK 497



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  E I+ G +   IS IA+ ++I I +     + A   L  ++   L    L    
Sbjct: 332 GPSLGEESIKAGEMAATISIIAVALFIIITYG-KLGVLASVALFSNVVLILSILTLLEAT 390

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A +   +G +V+  V++++R+R+ +K           I++     +   + +++
Sbjct: 391 LTLPGIAGIALTVGMAVDANVLIFERIREEIKSGKR---VERAIEEGFKNAIKTILDSNI 447

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              I+   M + G   I  F++ ++ GI+ +  S+I + 
Sbjct: 448 TTLIAAGIMFIIGSGAIRGFSVTLSIGILCSMFSAITVT 486


>gi|124266061|ref|YP_001020065.1| AcrB/AcrD/AcrF family protein [Methylibium petroleiphilum PM1]
 gi|124258836|gb|ABM93830.1| AcrB/AcrD/AcrF family protein [Methylibium petroleiphilum PM1]
          Length = 1080

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 149/548 (27%), Gaps = 33/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GL+      L    +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSLLMLIAGLIA-----LRGLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVATPLEEAINGVEGMLYMGSQATTDGLMTLTVTFRLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   +   
Sbjct: 116 AEPRLPEEVRRLGITTVKSSPDLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLARIDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   + + +       N      + G          Q 
Sbjct: 176 QVQLFGSGDYAMRVWLDPQKVAERGLSASDVVAAIRQQNVQAAAGVVGASPGLPGVDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 I    A      
Sbjct: 236 SINAQGRLQNEE-------------EFGDIIVKTGADGAVTRLRDLGRIELGAAEYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +            A L+          +          S   
Sbjct: 283 LLDNKSAVAVPIFQAPGSNAIEISNQVRATMAELKKYMPEGVDYEIVYDPTQFVRASIES 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++VI T A++ L G ++   S+ G+V
Sbjct: 343 VIHTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSVIGTFAVMHLFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLSPRDATYRAMREVSGPIIAIALVLIAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   +++        +       F     
Sbjct: 463 GLTGQFYRQFALTIAISTVISAINSLTLSPALAAMLLKGHGAPKDALTRGMDRVFGRFFS 522

Query: 537 CIAIQFMR 544
                F R
Sbjct: 523 LFNRAFKR 530



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               +    ++ + + + +  +++     L  I  + + +   +    L G + N+     
Sbjct: 879  NSAMWVFPLAILLVFLVLAAQYESLTLPLSIILIVPMGLLAAMTGVWLDGGDNNVFTQIG 938

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G S  + +++ +  R+   L     +      ++    L   + TS+A  + VLP
Sbjct: 939  LIVLVGLSAKNAILIVEFARE---LEFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLP 995

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + +    G  +  +  + +  G++   +  +F+     + +  
Sbjct: 996  LVLSSGAGAEMRQAMGVAVFAGMIGVTAFGLFLTPVFYVLLRR 1038



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 62/142 (43%), Gaps = 12/142 (8%)

Query: 690 WYFALGAITTLILDIT---KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           W  ++  +  + + +           LFG   N  ++  ++  IG  V+D +VV + + +
Sbjct: 365 WRASIIPLLAVPVSVIGTFAV---MHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVER 421

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
           N++     +S RD   +++ E  G  +  ++      +P+A      G     FA+ +A 
Sbjct: 422 NIEA---GLSPRDATYRAMREVSGPIIAIALVLIAVFVPLAFISGLTGQFYRQFALTIAI 478

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
             V++A +S+ ++  +   +  
Sbjct: 479 STVISAINSLTLSPALAAMLLK 500


>gi|257091813|ref|YP_003165454.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257044337|gb|ACV33525.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
          Length = 1056

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/640 (11%), Positives = 182/640 (28%), Gaps = 48/640 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+           + ++P+  P               + ++   
Sbjct: 9   RPIFAAVVAIILSIAGLVSIFV-----MPVQQYPAITP-------------VQVTVQATY 50

Query: 63  DDF-VNGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +  + + +        +   S    Q  +T+ FA     +    +V  
Sbjct: 51  PGADSKTLADSVAAPIEAQINGVDKMLYMTSSSSATGQLLLTVYFALDADPDIAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L     +  +    +    ++L               +       +D +   
Sbjct: 111 RVNLALPQLPSAVTQQGVSVQKKSSTIMMLLGVTGKGGRYSPGYVANYANVYVLDALKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +P R+  L  TT+ ++      N        G +   D+ 
Sbjct: 171 PGAGQAQIMGVADQAMRIWMNPDRMASLAITTSDIANAINTQNALFGAGQIGQQPTADAV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  +            + F        + +  ++ G+              L   
Sbjct: 231 ELSFPVVTQ------------SPFTDPRQYEKIILRANQDGSAIVRVGDVARAEVGLRQY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    +            +   +G    +        +++        +V          
Sbjct: 279 VVNTRINGEPTTLIAIYQQPGANGLVVSQAVRAALTEMKSRFPEGLDVVVALDTNDFVRL 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV++++++ +   +  L+   +I + ++ T A +  LG ++ L ++
Sbjct: 339 SIEEVLKTLAAAMVLVVLIVYLFLQNLRTTLICAVAIVVALVGTFAGMLALGFSINLLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G++L IG+ VD  I+V E +     ++     +      R+   I  S +  ++    +
Sbjct: 399 FGLILAIGMVVDDAIVVVENVERNMAQHH---LAAKEATIRSLGEIGSSLVAVVLVMASV 455

Query: 478 FFFG-------GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           F          G   R FAIT+ +S+ IS F A+++  AM   ++++             
Sbjct: 456 FVPAAFLAGTTGQLYRQFAITIVISVSISGFVALTLTPAMCALLLKHSPAPQRGFFAWFN 515

Query: 531 FFLIPDCIAIQF---MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
             +     A         +   +   +L           H L             ++A  
Sbjct: 516 RQVDRVTRAFGHAVEWVIKRMLLAFVLLGVFLYSIWHLFHLLPTSFVPNEDQGYAMVAII 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
               + +          D       G     +   Y   D
Sbjct: 576 MPQSASLDRTQAVADRVDAILAQIPGVDRRSMITGYSLID 615



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 87/248 (35%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V      L+   ++ +        +   Q    + +  ++ +     ++    P 
Sbjct: 263 VRVGDVARAEVGLRQYVVNTRINGEPTTLIAIYQQPGANGLVVSQAVRAALTEMKSRFPE 322

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                  +      R  I + +  +  + + +++ +++  +     L     +++ +  T
Sbjct: 323 GLDVVVALDTNDFVRLSIEEVLKTLAAAMVLVVLIVYLFLQNLRTTLICAVAIVVALVGT 382

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   NL  +  ++  IG  V+D +VV + + +NM  +   ++ ++   +S+ E
Sbjct: 383 FAGMLALGFSINLLTLFGLILAIGMVVDDAIVVVENVERNMAQH--HLAAKEATIRSLGE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V   +      +P A   G+       FAI +   + ++   ++ +   +   + 
Sbjct: 441 IGSSLVAVVLVMASVFVPAAFLAGTTGQLYRQFAITIVISVSISGFVALTLTPAMCALLL 500

Query: 825 DWRAKNAR 832
                  R
Sbjct: 501 KHSPAPQR 508



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
              +  +   + + + +  +++ W      +T +   I   L      G+E ++     +
Sbjct: 875 TSALAFVFGLLIVFLVLAAQYESWTLPGAVMTAVPFGILGALLTNWARGLENDVYFQIGL 934

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           L LIG    + V+   R+   +       S  +    +  + L   + TS+A    
Sbjct: 935 LVLIGLGAKNAVL---RVSAAVDFRKQGKSIMEATVLAGEQRLRPIIMTSLAFAFG 987


>gi|326204485|ref|ZP_08194342.1| protein-export membrane protein SecF [Clostridium papyrosolvens DSM
           2782]
 gi|325985278|gb|EGD46117.1| protein-export membrane protein SecF [Clostridium papyrosolvens DSM
           2782]
          Length = 326

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 149/313 (47%), Gaps = 27/313 (8%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ-- 602
            R++   +S +  +  + +    G    I+F+GG  + + AN  +       +L++    
Sbjct: 7   KRYYFFILSAIIILSGVAMYLVEGFKLDIEFEGGTIIEMRANDKMFTEKNTQDLQTQIAD 66

Query: 603 ----------------IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                             D++  N        + +  Q   S  +   +E    K  ++ 
Sbjct: 67  FVTKTLNKPAKVQKSTSYDVNGANAKSFDIIKISIGSQDTLSNTELTKVEEAVVKEFKLN 126

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLIL 702
               + + E V P I +E++  G+  ++I+ + +++Y+W RFK        + A+  +I 
Sbjct: 127 AKDAVVSEESVEPFIGKEIMNNGLKAIVIAFVLIILYVWYRFKAMSGLSAGVFAVVGVIH 186

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+   L  + +F I  N + +AA+LT++GYS+ND V++YDR+R+N +L    +   +L++
Sbjct: 187 DVLVMLSVYVIFQIPLNESFIAAMLTVVGYSMNDTVIIYDRIRENNRLLRK-VPLPELVN 245

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            SI +TL RS+ T + + I++  + ++    G + +  F+ P+  GI     SSIFIA+P
Sbjct: 246 SSIIQTLNRSINTVVTSLIAITTVYIFSKINGINSMEQFSFPLIVGITAGCYSSIFIASP 305

Query: 819 ILLFIYDWRAKNA 831
           + +   + + K  
Sbjct: 306 LYVMWKESQKKKK 318


>gi|119385667|ref|YP_916722.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Paracoccus
           denitrificans PD1222]
 gi|119376262|gb|ABL71026.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Paracoccus denitrificans PD1222]
          Length = 1041

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/666 (11%), Positives = 180/666 (27%), Gaps = 40/666 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G+L      LP   + ++P                          
Sbjct: 8   RPVLAWVISIFIVIAGVLA-----LPMMPIAQYPQVAWPQIT---------ISTAYTGAA 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +N  +    ++  + ++                IT +F            V   +  
Sbjct: 54  PGEINQAVAQPIEDELNGVEGLAYYESVSDSSGAMSITATFEPGTDIARAQVDVQNAVAR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L        ++        +++     D      I     + R    +I   E   
Sbjct: 114 VEPLLPQSVVDQGVLIEEAGTGFLMMVALTSDDGAMDDIALGDYLNRNVAGEIRRIEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP+++  L  ++A++       N        G            
Sbjct: 174 RAQVF-APERALRIWVDPAKMTGLNLSSAEIVAAVRAQNAQVAAGKVGADPNPIGQQLTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K ++  +              +    +                 +           
Sbjct: 233 TVLIKGQLDDVE-------------EFGKIVLRANPDGSTVLLRDVARLEVGAESYSFAS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +             A  +   T E        L         + +          S   
Sbjct: 280 RINGKPAAALGIQLSAAGNALSTSEAVHQKMEELSRFFPDGVSHTIPYDTTPFVEASIEK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   ++ ++    + + +  T+A++   G ++ + ++  +V
Sbjct: 340 VLHTLLEAVALVFVVMFLFLQNFRYTIIPTIVVPIALTGTVAVMLAAGFSINVLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      + +    +    I    +      V + FF
Sbjct: 400 LAIGILVDDAIVVIENVERIMATEGLPPREATEKAMGQISGAIVGITLVLAAVFVPMAFF 459

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G +    R FA+TM +SIL S F A+++  A+    ++        I+           
Sbjct: 460 PGSSGIIYRQFALTMVVSILFSAFLALTLTPALCATFLK-------PISGHHERKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R          L +   + ++  + +  G    G ++L        D   + ++
Sbjct: 513 FNRNFDRLTERYTSAVGLVTRRRLVMMAFYLVLVGATAMGFLRLPTSFLPNEDQGFIIAD 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +++      +  +    +   +  +    ++    R      +     +   T ++    
Sbjct: 573 IQTPATASSNRTDEVLGQATQMFQRSDAVENTVAIRGFSFSGQGPNAGLMFVTFKDWAER 632

Query: 658 GPKISR 663
                 
Sbjct: 633 EQSAQD 638



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 88/231 (38%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +    + +        L       G++++ +  +    ++++   P     
Sbjct: 264 DVARLEVGAESYSFASRINGKPAAALGIQLSAAGNALSTSEAVHQKMEELSRFFPDGVSH 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                        I K +  ++ +   + + +++  + + + +     + + +T T+   
Sbjct: 324 TIPYDTTPFVEASIEKVLHTLLEAVALVFVVMFLFLQNFRYTIIPTIVVPIALTGTVAVM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  + A++  IG  V+D +VV + +     + T  +  R+  +K++ +  G 
Sbjct: 384 LAAGFSINVLTMFAMVLAIGILVDDAIVVIENV--ERIMATEGLPPREATEKAMGQISGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V  ++      +PMA + GS       FA+ M   I+ +A  ++ +   +
Sbjct: 442 IVGITLVLAAVFVPMAFFPGSSGIIYRQFALTMVVSILFSAFLALTLTPAL 492



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 78/268 (29%), Gaps = 7/268 (2%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                    +     ++     +  +  +  + L V       +        + + G    
Sbjct: 748  AYINDFPNAGKMQRVVMQAEDDSRMQAEDILALTVRNAGGGMVPFSSFASVAWEQGPSQV 807

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
              ++G     +     PG S                           +   +   +    
Sbjct: 808  VGYNGYPAIRIAGAAGPGYSSGAAMAEMERLAAELPPGFGYEWTGQSLEEIQAGSQATLL 867

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + ++      L+   +   W   L  +  + L +   +    L  +  ++     ++ 
Sbjct: 868  YAMSILFVF---LLLSGLYESWSIPLSVMLVVPLGVLGCVVAVMLRDMPNDIYFKVGLIA 924

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +IG S  + +++ +  +    L     S  D    +        + TS+A  + V+P+A+
Sbjct: 925  IIGLSAKNAILIVEFAKD---LREQGQSLIDAAVTAAKLRFRPILMTSLAFTLGVVPLAI 981

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              G    S    +  G++    ++  +A
Sbjct: 982  ATGPSAASQN-AIGTGVIGGMVAATVLA 1008


>gi|254507219|ref|ZP_05119356.1| protein-export membrane protein SecD [Vibrio parahaemolyticus 16]
 gi|219549929|gb|EED26917.1| protein-export membrane protein SecD [Vibrio parahaemolyticus 16]
          Length = 609

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 156/513 (30%), Positives = 265/513 (51%), Gaps = 27/513 (5%)

Query: 25  NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE 84
           +F   S+   +   +  + I LGLDLRGG   +L VD D        +  DE+R  L++E
Sbjct: 110 SFSYVSVAPEWLGELGFSPIKLGLDLRGGVQFLLNVDIDKAFEEQRNVLMDEMRDMLRQE 169

Query: 85  GIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
            I             + FA       ++  +    L  V + L  +     +       +
Sbjct: 170 RIRG-----------VKFAQVGVDGFDVKSEAGESLSRVATYLKQNYPGWDVKRH-SDYL 217

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
           ++  +Q N  +  +  I Q+++I+R RI+++GI+E+ +QR G H I I+LPG QDPS+ +
Sbjct: 218 AVKPTQQNKTEFQTITITQNLKIMRDRIEELGITEAAVQRQGEHSIRIELPGVQDPSQAK 277

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            ++G TA ++FH+       +G  +G   L+D+DG   ++  +  ++G H+  A A  D 
Sbjct: 278 NVIGATATLAFHEAKS--PSEGVSYGDIVLQDNDGRDVVLAKRAVLTGEHIVNARAGIDK 335

Query: 264 KTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                V        G            +    V  +              + +    Q+ 
Sbjct: 336 MGFSEVNISLDHAGGKIMSDFSGSHIGKPMATVYSEYTTNAKGETERSERVISVATIQSQ 395

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG+++I  G  A+  GL
Sbjct: 396 LGSQFRITGAGSMEDAQNLALLLRAGSLTAPVTIVEERTIGASLGAENIQNGFAALGLGL 455

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSN 431
            + + FM + Y + G VA+ ++ +N++  L L++LL  A LTLP IAG+VL +G+AVD+N
Sbjct: 456 AMTLTFMALWYRRLGWVANVALLINMVSLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTN 515

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ERI+++  + ++   S+D+GF  A STI D+NIT +I  VVL+  G G ++GFA+T
Sbjct: 516 VLIFERIKDKLAEGRTFAQSIDLGFGSALSTILDANITTMITAVVLYSIGNGPIQGFALT 575

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GL +L SMF+ +   RA++  +      + + 
Sbjct: 576 LGLGLLTSMFSGVFASRAIINLVWGRDSRRDVR 608



 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 77/176 (43%), Gaps = 5/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +G  +  E I+ G   + +     L ++ + ++      A   L++++   LG  AL  
Sbjct: 434 TIGASLGAENIQNGFAALGLGLAMTLTFMALWYR-RLGWVANVALLINMVSLLGLIALLP 492

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  +       +F   ID      L   + 
Sbjct: 493 GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLAE---GRTFAQSIDLGFGSALSTILD 549

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++   I+ + +   G   I  FA+ +  G++ +  S +F +  I+  ++   ++ 
Sbjct: 550 ANITTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFSGVFASRAIINLVWGRDSRR 605


>gi|208779749|ref|ZP_03247093.1| protein-export membrane protein SecD [Francisella novicida FTG]
 gi|208744204|gb|EDZ90504.1| protein-export membrane protein SecD [Francisella novicida FTG]
          Length = 645

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 280/542 (51%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D    ++  L      + S
Sbjct: 107 YIIAMNMLSNSP--NWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILS 164

Query: 80  FLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
             K   I + S  +                  ++++ A+S   + +   ++         
Sbjct: 165 AAKDNSINISSSTKAEEKSTIKAPQNYLENGFVSITLANSADVDKLKQYLST-------D 217

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 218 FIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G      
Sbjct: 278 DNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNGRGYQSY 337

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 338 YSLKGTAVAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 397

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 398 TTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 457

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ +N+IL 
Sbjct: 458 VPVHIVQEQQIGPSLGKDNIEKGMLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILI 517

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 518 VAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 577

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 578 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKK 637

Query: 521 KS 522
             
Sbjct: 638 LE 639



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIEKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 43.5 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  IL  ++  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNILIVIVLALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|148360027|ref|YP_001251234.1| RND multidrug efflux transporter MexF [Legionella pneumophila str.
           Corby]
 gi|296108152|ref|YP_003619853.1| RND multidrug efflux transporter Mex [Legionella pneumophila
           2300/99 Alcoy]
 gi|148281800|gb|ABQ55888.1| RND multidrug efflux transporter MexF [Legionella pneumophila str.
           Corby]
 gi|295650054|gb|ADG25901.1| RND multidrug efflux transporter Mex [Legionella pneumophila
           2300/99 Alcoy]
          Length = 1050

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/588 (11%), Positives = 150/588 (25%), Gaps = 28/588 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  IG++           + ++P+ +P               + +    
Sbjct: 9   RPVLANVIALFIVFIGIIAIAV-----LPVSQYPAIVPPT-------------IQVTTSY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L       +   +           +        + ++FA           V  
Sbjct: 51  PGADAKTLINTVALPIEQQVNGVEDMLYMQSTSTSGGTYTLIVTFAIGTDLNYAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   ++L    +K  +V   +    +              +           D++   
Sbjct: 111 RVQAAMAQLPESVQKQGVVVQQKSTAILQFITLTSKNDEYDGVFLDSYATINMQDELSRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP ++       + +       N        G        
Sbjct: 171 PGVGNVVVFGSGSYAMRVWLDPKKMLAFSLNPSDVLNAISYQNKEVSAGQLGAPPTVGKQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V    ++S              T       +      +         +       
Sbjct: 231 AYQFTVNVPGQLSDPKEFENIIIKTIDTSPDENSSASSSA--QVVRIRDVGRVELGSESY 288

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A +     P     +          
Sbjct: 289 NQLANLNGKPTAAIGIFQLPGANALDVAQEVRKAVAKMAKQFPPGLEYSIPFDTTVFVKA 348

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+ + +   +  LV   ++ + +I T   + LLG ++ L ++
Sbjct: 349 SIEEVYKTLFEAGILVLIVIVVFLQNFRASLVPATTVPVTIIGTFFAMLLLGYSINLLTL 408

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IG+ VD  I++ E + +   K  S   S  +     +  I    +  +   V  
Sbjct: 409 FALVLAIGIVVDDAIVIVEGVTQHIEKGMSPKESAILAMKELFGPIIGITLVLMAVFVPA 468

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G     FA+ +  +  IS   A+++        ++              F  I
Sbjct: 469 GFMPGLTGSMYAQFALVIAATAFISAINAMTLKPTQCALWLKAPDTSKPKNIFFQAFDRI 528

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            + I   +++     V  S    +  I L+            G I + 
Sbjct: 529 YNPIESAYVKFIDRLVHRSGKVCLIGIILVACAIYGLTRIPTGFIPME 576



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 7/220 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V +  V       +  +            +   Q    +++   + +     K+ +  
Sbjct: 271 QVVRIRDVGRVELGSESYNQLANLNGKPTAAIGIFQLPGANALDVAQEVRKAVAKMAKQF 330

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I +    +  + I +LI I +  + +  +L   TT+ + I 
Sbjct: 331 PPGLEYSIPFDTTVFVKASIEEVYKTLFEAGILVLIVIVVFLQNFRASLVPATTVPVTII 390

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   NL  + A++  IG  V+D +V+ + +    +     +S ++    ++
Sbjct: 391 GTFFAMLLLGYSINLLTLFALVLAIGIVVDDAIVIVEGV---TQHIEKGMSPKESAILAM 447

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
            E  G  +  ++      +P        GS+   FA+ +A
Sbjct: 448 KELFGPIIGITLVLMAVFVPAGFMPGLTGSMYAQFALVIA 487



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I +   +L+Y+ +      W      I ++ L +  T+      G++ N+     +L LI
Sbjct: 886  IFALSLVLVYLILSGQYENWLIPSAIILSVPLTLVGTVLALGSLGMDNNMYTQIGLLLLI 945

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
              +  + +++ +  R+  +++    S  +             + TS A  + V+P+    
Sbjct: 946  ALATKNAILIVEVAREQREIHNK--SVLEAAVIGAKTRFRPILMTSFAFIMGVMPLVFAT 1003

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G +   S  I ++ G++ +   ++       + +  W+ K  
Sbjct: 1004 GAGANSRRSIGIAVSSGMLASTCLAVVFVPVFYVLLQTWQDKRK 1047


>gi|254373051|ref|ZP_04988540.1| preprotein translocase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|151570778|gb|EDN36432.1| preprotein translocase [Francisella novicida GA99-3549]
          Length = 645

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 279/542 (51%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D    ++  L      + S
Sbjct: 107 YIIAMNMLSNSP--NWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILS 164

Query: 80  FLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
             K   I + S  +                  ++++ A+S   + +   ++         
Sbjct: 165 AAKDNSINISSSTKAEEKSTIKAPQNYLENGFVSITLANSADVDKLKQYLST-------D 217

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 218 FIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G      
Sbjct: 278 DNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNGRGYQSY 337

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 338 YSLKGTAVAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 397

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 398 TTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 457

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ +N+IL 
Sbjct: 458 VPVHIVQEQQIGPSLGKDNIEKGMLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILI 517

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A +S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 518 VAAMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 577

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 578 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKK 637

Query: 521 KS 522
             
Sbjct: 638 LE 639



 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIEKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAAMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  ++  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIVLALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|78045893|ref|YP_362068.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78034323|emb|CAJ21968.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1025

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/681 (10%), Positives = 179/681 (26%), Gaps = 36/681 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        L+++P+  P   I+                 
Sbjct: 8   RPIFAWVIAIVITLAGALSIL-----SLPLEQYPNIAPPT-IN--------VSATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L     +   S       ITL+F      +    +V   +  
Sbjct: 54  AQTVQNSVTQILEQQMTGLDHLLYMSSSSSSAGTASITLTFDSGTDPDTAQVQVQNKVSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEK-EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             S L    + N +  T        ++     +     + +    ++    D I      
Sbjct: 114 GESMLPEAVQSNGVTVTKSTGSSMFMVLAFTSEDGSMDSTDIGDYMVSTLQDPISRLNGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP +LR      A +S      N        G           
Sbjct: 174 GGVNVFGS-EYSMRVWLDPDKLRTYALMPADVSNAISAQNADVSSGALGALPAVQGQQLN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  + ++                 +    +   + G    +      +          
Sbjct: 233 ATVTSRSKL-------------KTPAQFEAIVLKSQPGGATVYLRDVARVELGSKSYASS 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   +          +     +        L+          +          S  
Sbjct: 280 SKYNGKSASGMGLELATGANALDAAKAVEDKLEQLKPYFPTGLKYEIAYDTTPFVRISIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+++ +   +  LV   ++ + ++ T  +L+LLG ++   ++  +
Sbjct: 340 EVVKTLLEAIALVVLVIYLFLQNWRATLVPVIAVPVVLLGTFGVLALLGYSINTLTMFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    + +  S   +      +    +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERLMSEQGMSPRQATHTSMGQISGALVGIALVLTAVFLPMAF 459

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FG   G   R F++T+  ++L+S+  A+++  A+   +      +   ++          
Sbjct: 460 FGGATGEIYRQFSVTIAAAMLLSLLVALTLSPALCASL-LKPIARGGHVSRQGMLGRFFG 518

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               +F R+                     +     +      +L        D  ++  
Sbjct: 519 RFNARFDRSAEGYGRGVGTLIGHRKLGGLVYLALLVVMALLFWRLPSSFLPDEDQGMLMV 578

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              +             ++     L+      +                           
Sbjct: 579 MFTTPAGATQQRTQQSIDQATDFILKQPEVAGMMTISGFSFAGSS-QNSGMGFIKLKDWA 637

Query: 657 VGPKISRELIRKGIVGVIISA 677
                ++E+  +    ++ + 
Sbjct: 638 QRDAPAQEIANRITGAMMGAL 658



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/405 (10%), Positives = 117/405 (28%), Gaps = 10/405 (2%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L  + ++ +    A I L      D +    +   + ++    +  ++         +  
Sbjct: 75  LLYMSSSSSSAGTASITLTFDSGTDPDTAQVQVQNKVSQGESMLPEAVQSNGVTVTKSTG 134

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            S    L  T          +  + ++     +      +  V            +    
Sbjct: 135 SSMFMVLAFTSEDGSMDSTDIGDYMVSTLQDPISR-LNGVGGVNVFGSEYSMRVWLDPDK 193

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +   +                   G   ++               +          + + 
Sbjct: 194 LRTYALMPADVSNAISAQNADVSSGALGALPAVQGQQLNATVTSRSKLKTPAQFEAIVLK 253

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +        +R              +          +  +           + V+ K+ +
Sbjct: 254 SQPGGATVYLRDVARVELGSKSYASSSKYNGKSASGMGLELATGANALDAAKAVEDKLEQ 313

Query: 645 IVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           + P         +    +  +   I + +  ++ +   +++ I++  + W   L  +  +
Sbjct: 314 LKPYFPTGLKYEIAYDTTPFVRISIEEVVKTLLEAIALVVLVIYLFLQNWRATLVPVIAV 373

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G  AL G   N   + A++  IG  V+D +VV + +     +    +S R  
Sbjct: 374 PVVLLGTFGVLALLGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERLMSEQGMSPRQA 431

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              S+ +  G  V  ++      LPMA +G   G +   F++ +A
Sbjct: 432 THTSMGQISGALVGIALVLTAVFLPMAFFGGATGEIYRQFSVTIA 476



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 80/261 (30%), Gaps = 17/261 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                   G   +   ++  V  S   S+  +     +S  N                   
Sbjct: 755  RMLPADIGRWYVRNSSSEMVPFSAFSSSAWAYAPQVLSRFNGVESMEITGSAASGISSGE 814

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WI 686
            A   +  +V K   ++    +  + +                 ++ +   + +++    +
Sbjct: 815  AMNGIAGLVGKIGKDVGYAWSGMSYQEQAAG--------AQTWMLYAVSLVFVFLCLAAL 866

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               W   +  +  + + I   L    L G+  ++     +L  +G +  + +++ +  ++
Sbjct: 867  YESWSIPISVMLAVPVGIVGALLATWLRGLSNDIYFQVGLLATMGLAAKNGILIVEFAKE 926

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
               L        +    +    L   V TS+A  + VLPM V    G     S    +  
Sbjct: 927  ---LEEKGQPLIEATLHAARMRLRPIVMTSLAFLLGVLPMVVSSGAGSGGRHSLGTGVLG 983

Query: 804  GIVVAASSSIFIAAPILLFIY 824
            G +V+    IF      + + 
Sbjct: 984  GTLVSTLLGIFFVPLFYVMVR 1004


>gi|217976815|ref|YP_002360962.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocella silvestris BL2]
 gi|217502191|gb|ACK49600.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocella silvestris BL2]
          Length = 1053

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/641 (11%), Positives = 173/641 (26%), Gaps = 42/641 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
                +L  +I  IG +      L    +  +P+ +P               + +     
Sbjct: 10  PVLANVLAIIIVLIGSVA-----LYTLPVSEYPNVVPPT-------------VQVTTRYP 51

Query: 64  DFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQNKI-TLSFADSRFKENIADKVTLF 118
                 +       +   +           +       + T++F            V   
Sbjct: 52  GASPQTVVDTVALPIELQVNGVDRMLYMQSTSAADGTYVLTITFDIGTDPNIDQVLVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +    ++L    +   +    +    + +   +       ++  S       ++++    
Sbjct: 112 VNSAMAQLPQAVQSQGVTIQKKNTSILQIVTLDSPDGRYDSLFMSNYATINLVNELARLP 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP +L         +       +        G+        
Sbjct: 172 GVGNVTVFGASNYAMRIWLDPQKLYSYGLQPKDVILAVREQSQEVAAGQVGMPPAPKDQD 231

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            QY ++ +  ++           DP     ++       G +         +        
Sbjct: 232 FQYTIDIQSRLN-----------DPAQFGEIIIKDMTAQGGQLVRVKDVARVDLGAQTYS 280

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L A            + +     +        L A         +          S
Sbjct: 281 QDFKLNAKPGAGIAIFQTPEANSIAVAKAVKAKMDKLSAHFPEGLRFTIPFDTTIFVEDS 340

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +    T      LVLIV+ + +   +  LV   ++ + +I   A ++ LG T+ L ++ 
Sbjct: 341 ITEVYKTLYQAGILVLIVILVFLQNFRATLVPATTVPVTIIGAFAAMAALGFTVNLSTLF 400

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GIVL IG+ VD  I++ E + +   +  S   +     +     I    +  +   +   
Sbjct: 401 GIVLAIGIVVDDAIVIVEGVSKYIERGMSGHDAAITAMNELIGPILGITLVLMSVFIPAA 460

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F     G     FA+ +  + LIS   A ++        +R              F  + 
Sbjct: 461 FMPGLTGQMFAQFALVIAATALISAINAATLKPTQCAMWLREPTPPDQRNAFYRGFNFVY 520

Query: 536 D-----CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                   A+     R  G+ + I  ++  + +     L             ++A +  D
Sbjct: 521 QKMENGYAALIGRMVRHAGLMVLISLALAGLGIWGIARLPTAFIPNDDQGYAMIAVQLPD 580

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            + +     +L +     +   G ++ +        D+ A 
Sbjct: 581 GAALGRTTAALGLATEIAKATPGVEDVIAISGQSVLDNNAT 621



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/235 (17%), Positives = 82/235 (34%), Gaps = 6/235 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +     + V +  V       Q     F+        +   Q    +S+A  + ++    
Sbjct: 256 MTAQGGQLVRVKDVARVDLGAQTYSQDFKLNAKPGAGIAIFQTPEANSIAVAKAVKAKMD 315

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
           K++   P                + I +    +  + I +LI I +  + +   L   TT
Sbjct: 316 KLSAHFPEGLRFTIPFDTTIFVEDSITEVYKTLYQAGILVLIVILVFLQNFRATLVPATT 375

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I       A  G   NL+ +  ++  IG  V+D +V+ + +    K     +S  D
Sbjct: 376 VPVTIIGAFAAMAALGFTVNLSTLFGIVLAIGIVVDDAIVIVEGV---SKYIERGMSGHD 432

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGIVVAASSSI 813
               ++NE +G  +  ++      +P A   G     FA   +      A  S+I
Sbjct: 433 AAITAMNELIGPILGITLVLMSVFIPAAFMPGLTGQMFAQFALVIA-ATALISAI 486



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 66/185 (35%), Gaps = 9/185 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLG 709
              E  G     +L+   +V V      +L+Y+ +      W   L  ++ + L +   + 
Sbjct: 859  GFEWSGMSYQEKLVGNQLVFV-FGLSILLVYLVLAGQYESWILPLSVLSAVPLALLGPVI 917

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 G+  NL     ++ LI  S  + +++ +  R+         S  D   ++     
Sbjct: 918  ALTSLGVANNLYTQIGLMLLIALSAKNGILIVEVAREE--HVKNGKSVIDAAVEAARVRF 975

Query: 770  GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS A  + V+P+ +    G +   S  I +  G++ +   ++         +  +
Sbjct: 976  RPILMTSFAFILGVVPLVIATGAGANARRSLGISVFSGMIASTCLAVLFVPSFFTLLQGF 1035

Query: 827  RAKNA 831
              +  
Sbjct: 1036 EERRK 1040


>gi|307326765|ref|ZP_07605957.1| protein-export membrane protein SecF [Streptomyces violaceusniger
           Tu 4113]
 gi|306887528|gb|EFN18522.1| protein-export membrane protein SecF [Streptomyces violaceusniger
           Tu 4113]
          Length = 373

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 81/301 (26%), Positives = 143/301 (47%), Gaps = 13/301 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+  R    G+SIL +I +I  L   GLN GI+F GG        + V  S +R   E
Sbjct: 18  YDFVGKRKLWYGVSILITITAIVGLAVRGLNMGIEFSGGAVFTTPNTK-VSASDLRQTAE 76

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
               G        G     +++           +          E+   ++  +T++VGP
Sbjct: 77  DASGGHTVVVQELGRGGLRIQISELGTKEALPVQE-----NLAKELGVKTSKIDTQLVGP 131

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               ++  K   G+ I  + ++IY+ I F+W  AL A+  LI D+T T+G +AL G E  
Sbjct: 132 SWGEQIAGKAWQGLAIFMVLVVIYLAIAFEWRMALAALIALIHDLTITVGVYALVGFEVT 191

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++GYS+ D VVV+D +++  +  T     ++ ++ ++S+N TL RS+ T++
Sbjct: 192 PGTVIGLLTILGYSLYDTVVVFDGLKEASRDLTKQTRFTYSEIANRSLNSTLVRSINTTI 251

Query: 778 AAFISV-----LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A + V     +   + G  ++   ++ +  G+   A SSIFIA P++  + +   K   
Sbjct: 252 VALLPVGALLFIGGGLLGAGMLNDISLALFVGLAAGAYSSIFIATPLVADLKERDPKMKA 311

Query: 833 I 833
           +
Sbjct: 312 L 312


>gi|229820488|ref|YP_002882014.1| protein-export membrane protein SecF [Beutenbergia cavernae DSM
           12333]
 gi|229566401|gb|ACQ80252.1| protein-export membrane protein SecF [Beutenbergia cavernae DSM
           12333]
          Length = 358

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 72/312 (23%), Positives = 139/312 (44%), Gaps = 13/312 (4%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L     +   +  R     I++   + S  L+   GLN GI+F+GG +  V
Sbjct: 2   PSFAKFGNDLYTGHRSYDIVGRRKTWFLIALGLIVISGLLVGIRGLNPGIEFRGGSEFVV 61

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 D  + +  L+ +    ++  +  G     V+      D +   +  EM      
Sbjct: 62  SEASTTDQELAQEVLDGIAPEQVARVSIVGSSTVRVQT-----DQLTNEQTDEMQIALAE 116

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                +    +  VGP   R++  + + G++     + + + + F+ W  A GA+  L+ 
Sbjct: 117 AYGVPTEQVTSSFVGPTWGRDVTTRALQGLVTFLAIVSVVMAVYFRTWTMAAGALIALVH 176

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDL 760
           D+  T+G +A  G E     V   LT++GYS+ D VVV+D++R+N    T  T +++ + 
Sbjct: 177 DLIVTVGLYAGVGFEVTPATVIGFLTILGYSLYDTVVVFDKVRENTSGITEQTRVTYAEA 236

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFI 815
            + ++N+T+ RS+ TS+ A + V  +        G   +   A+ +  G +V+ +SSIFI
Sbjct: 237 ANLAVNQTIVRSINTSVVAVLPVASILFVGALLLGAGTLRDIALALFIGTIVSTASSIFI 296

Query: 816 AAPILLFIYDWR 827
           A P+ +   + +
Sbjct: 297 ATPVFVAFRERQ 308


>gi|313896321|ref|ZP_07829874.1| acriflavine resistance protein B [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|320529285|ref|ZP_08030375.1| putative inner membrane multidrug efflux protein BpeB [Selenomonas
           artemidis F0399]
 gi|312975120|gb|EFR40582.1| acriflavine resistance protein B [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|320138459|gb|EFW30351.1| putative inner membrane multidrug efflux protein BpeB [Selenomonas
           artemidis F0399]
          Length = 1063

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/589 (12%), Positives = 160/589 (27%), Gaps = 32/589 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  MI  +G +           + ++P   P                      
Sbjct: 8   RPIFAIVIALMIVIVGTIAGF-----SLPIAQYPQISPPTV---------AVSASYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              VN  +    +E  +  +       +        ++++F      +  A KV     G
Sbjct: 54  AAVVNETVAQVIEEQVNGTQGMDYMDSTSDDTGRYSLSVTFEVGTDGDMDAVKVQNNAAG 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            N+ L    +   + T               +                 +D I       
Sbjct: 114 ANASLPSSVQSAGVTTRKSSGQMAYFVSLYSEDGSYDRAFMKNYATLYFLDAIKRVNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +P RL +L  T A ++      N        G     +    Q+
Sbjct: 174 EVQVFGA-DYAMRVWLNPDRLAELGLTVADITAAINEQNVQAPAGTVGGMPTVNGQEKQF 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + +  ++                +    I                 I           
Sbjct: 233 TGKVQGRLT-------------TPEEFGNVIIASGKDGSFVRLKDVARIETGQRQNNIVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   TI     +     A   P         +      S S 
Sbjct: 280 KFNGYPAVGFGIQLTSDANAMTTIAEVRKILDDAEANFPPGLKMKSIFDSTDYINASISE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  ++   ++ +++I T     LL  ++   ++  +V
Sbjct: 340 VVHTFVEALLLVVLVIFVFLQSWRATVIPLLAVPVSLIGTFGAFVLLDFSINTLTLFAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +        S   + +   +     +           V + F G
Sbjct: 400 LAIGLVVDDAIVVIENVEHHMESGLSPIDATERAMAEVQGPVVAIAFVLAAVFVPVAFLG 459

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA+T+ +S+ +S F A+++  A+   +++ KK  +        F    +  
Sbjct: 460 GMMGVLYKQFALTIAISMALSAFVALTLTPALCALMLKPKKENAKKGFLDRFFDGFNNWF 519

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                              I  + LL   G+   I            ++
Sbjct: 520 NRARKGYIGIVTNSIRKSRIAIVFLLIVCGVTALIYKNLPSTFVPEEDQ 568



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  +  + + +  T G F L     N   + A++  IG  V+D +VV + +    
Sbjct: 361 SWRATVIPLLAVPVSLIGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIVVIENV---E 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGI 805
               + +S  D  ++++ E  G  V  +       +P+A  GG   V+   FA+ +A  +
Sbjct: 418 HHMESGLSPIDATERAMAEVQGPVVAIAFVLAAVFVPVAFLGGMMGVLYKQFALTIAISM 477

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++A  ++ +   +   +   + +NA+
Sbjct: 478 ALSAFVALTLTPALCALMLKPKKENAK 504



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 26/260 (10%), Positives = 81/260 (31%), Gaps = 27/260 (10%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L    +     Q         + +Q   G   +  + +  + + + +  P        
Sbjct: 802  DTLLKPTLTTGPTQISRFNGARSITIQGSAGQGYSSGQAMNAITEIVQKHAPSGYNIEWS 861

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL-------ILDITKT 707
                +  +      +  + ++ + + + +   ++ W      + T+       +      
Sbjct: 862  GQSREERKS-ADSTMQVLALALVFVFLALAALYESWSVPFAVLLTVPTGIFGALFSEYAL 920

Query: 708  LGFFALFGIEF-----NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
               F + GI       ++     V+ +IG +  + +++ +  +         +       
Sbjct: 921  AFIFGMIGIPAAGFQNSVYMQIGVIMVIGLAAKNAILIVEFAK---VRVDRGMDPLKAAI 977

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS A  I  LP+A+  G+   +     + +  G++ A +  IF+    
Sbjct: 978  QAAGLRLRPILMTSFAFIIGCLPLAIASGAGAAARNGMGVAVVGGMLFATALGIFLIPVF 1037

Query: 820  LL-------FIYDWRAKNAR 832
             +        +   +    +
Sbjct: 1038 YVVVDRIARMLGGRKKPKIK 1057


>gi|331697366|ref|YP_004333605.1| protein-export membrane protein SecF [Pseudonocardia dioxanivorans
           CB1190]
 gi|326952055|gb|AEA25752.1| protein-export membrane protein SecF [Pseudonocardia dioxanivorans
           CB1190]
          Length = 408

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 145/323 (44%), Gaps = 15/323 (4%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             P     L     A   +  R           +  +  +   G N GIDF GG Q+   
Sbjct: 6   TRPGKFSGLYTGTGAFDIVGKRKIWYAFFGALVLVCLVSIIFRGFNLGIDFTGGTQIQFP 65

Query: 585 AN----RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           A     +     V +   +S+ I   S Q+     +  ++L+ +P D      + + + +
Sbjct: 66  AAGAQGQITTTQVSQVYEKSVGIPAASVQSAGTGASETIQLRSEPLDVGQTAALKQALFQ 125

Query: 641 KITEIVPL----STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
           ++  + P       + +   V      ++ R+ I+ + +  + + I++   F+   A+ A
Sbjct: 126 ELQPLGPDGQPSQQVISDSDVSGTWGGQITRQAIIALAVFLVLVTIFLAFYFERSMAIAA 185

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTS 754
           +  L+ D+  T G +++ G E +   V  +LT++G+S+ D VVV+D++R+N +  L  T 
Sbjct: 186 LVALLHDVVVTAGIYSIVGFEVSPATVIGLLTILGFSLYDTVVVFDKVRENTRGLLGLTR 245

Query: 755 ISFRDLIDKSINETLGRSVYTSMAA-----FISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
            ++ +  + ++N+TL RS+ TS+ A      + V+ + + G   +   A+    GIV  A
Sbjct: 246 RTYGEAANLALNQTLMRSINTSLIAVLPVLGLLVVGVGLLGVGTLADLALVQLVGIVAGA 305

Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832
            SS+ +A P+L+ +     +  +
Sbjct: 306 LSSLALATPLLVDLKMRDPRFRK 328


>gi|326385760|ref|ZP_08207389.1| putative multidrug efflux pump [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209739|gb|EGD60527.1| putative multidrug efflux pump [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 1062

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/526 (12%), Positives = 152/526 (28%), Gaps = 39/526 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           + ++P  +P               + +    
Sbjct: 10  RPIFAAVIAVIITVVGALA-----FVGLPISQYPDIVPPT-------------VTVSAQY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +     +   S +   +    IT++F      +     V  
Sbjct: 52  PGASAETVAATVATPIEQEINGVDNMLYMSSQSTGDGKVTITVTFKAGVDLDAAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +VT       +++          +    S   + Q  D++   
Sbjct: 112 RVAVATPRLPEEVQRLGVVTRKTTPDFLMVVNLQSPDGSLNRDYLSNYALTQVRDRLARI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP R  +L  T  ++       N        G        
Sbjct: 172 DGVGDIRLVGSRDYAMRIWIDPGRAAELNLTAGEIVAALRAQNVQVSSGEIGQPPYDKGQ 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  VE +  ++                +    +   +    +        +       
Sbjct: 232 AFQLGVETQGRLT-------------DPQQFADIVIRTDAQGHQVRVRDVARVELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L+           +   +              +  G                   
Sbjct: 279 TVNTYLSNKPTVVIAVMQRPGSNALDAALKVKAEMDTIARGFPKGMEYSTIYNPTEFISQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   +I +++I T  +L+ LG +L   S+
Sbjct: 339 SIDAVYHTLFEAVVLVVLVILVFLQNWRAAIIPIIAIPVSLIGTALMLAGLGYSLNNLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E +       QS   +          A   I        + T
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIALGQSPLEAARTSMDEVSTALVAIVLVLCAVFVPT 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + +    G   R FA+T+  + +IS+  ++++  AM   ++R+   
Sbjct: 459 LFITGLSGAFYRQFAVTISTATVISLVLSLTLSPAMAARLLRHGGP 504



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
                V   ++ + + + +  +++     FA+  I  + L     LG   L G++ N+   
Sbjct: 881  NTAGVVFGMAVLFVFLVLAAQYESLALPFAIILIVPMCL-FAAMLGV-NLRGMDNNVLTQ 938

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ LI  +  + ++V +  +         +S  +    +    L   + TS A  +  
Sbjct: 939  IGLVVLIALAAKNAILVVEFAK--QAEDEQGMSPVEAAVFAARTRLRPILMTSFAFILGA 996

Query: 784  LPMAV---WGGSVIGSFAIPMAFGI 805
            +P+      G  +  +    + FG+
Sbjct: 997  VPLVTASGAGAELRQALGTAVFFGM 1021


>gi|109897362|ref|YP_660617.1| acriflavin resistance protein [Pseudoalteromonas atlantica T6c]
 gi|109699643|gb|ABG39563.1| acriflavin resistance protein [Pseudoalteromonas atlantica T6c]
          Length = 1036

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/629 (9%), Positives = 168/629 (26%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   G++           L  +P   P              +      
Sbjct: 9   KRPVFASVVNLLLVVFGIVAVTF-----LSLREYPDVDPPIV---------SINTTYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       + R  ++ I + F  SR  +  ++ V   +  
Sbjct: 55  SAAIIESRITQLLEDRISGIEGIKNIESTSRNGRSSIDVEFNLSRDIDAASNDVRERVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L        +  +T  +  IV      D      +E +    R  +D++ ++E   
Sbjct: 115 ALNNLPDQADPPEVSKSTSDDDVIVWYNLRSDN--MSVMELTDYADRYLVDRLSVAEGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    + + +     T A +       N                     
Sbjct: 173 NVRLGGGRSYAMKVWLNRNAMAARGITVADIEQVIQAENVELPAGEVQSDQRDFDVRV-- 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A                              +           
Sbjct: 231 -----------------ARSYLSPDDFSKLPVKAGADGYLIRLGEVATVELGAEDDETEF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     + +++ +       A      ++         +    +      S + 
Sbjct: 274 RGNGVNMIGLGITKQSKANTLEVARAAKEAIDEIQQTLPDNIFIVPSYDSSVFIEASINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   +V++V+++ +   +  ++   ++ ++++    ++  LG ++ L ++  +V
Sbjct: 334 VYETLAIAMLMVVLVIYIFLGNIRATIIPAVTVPVSLVAAFTVMYALGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +   G       +  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVVLENISRRIELGEPPLLAAYRGAREVGFAVIATTLVLIAVFVPLVFLQ 453

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G   R F            F++++ +  + +   +            +            
Sbjct: 454 GNIGRLFTEFALAIAAAVAFSSVTALTLIPMLSSKLLTKTKSSKGLNAWMNRSFTKFEGS 513

Query: 542 FMR--------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           + R             + I +        +          + +G   + + A        
Sbjct: 514 YFRVLGKTIHQPILMALLILVSVVGLLRLVEILPSEFVPKEDRGNFFIQIQAAEGASFKE 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
              +++ ++   + + +       LVRL 
Sbjct: 574 NSRSMKKVEEIILPYLDSGEATRVLVRLP 602



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 62/160 (38%), Gaps = 7/160 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I   +++ + + + +  +F+ W   L  + T+ L +          G+  N+ +   ++ 
Sbjct: 853  IFIFLMALVIVYLILAAQFESWVHPLVIMLTVPLALVGAFIGLYFAGMTLNIYSQIGLVM 912

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG +  + +++ +      +L      F   + ++    L   V TS     S LP+  
Sbjct: 913  LIGLAAKNGILIVEFAN---QLRDAGAEFESALKRAAMLRLRPIVMTSFTTIFSSLPLVF 969

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G        + +  G++V+   ++F+      ++  
Sbjct: 970  ASGAGSESRTVIGMVIFAGVLVSTLLTLFVVPTAYYWLAR 1009



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 60/168 (35%), Gaps = 6/168 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A    ++ +++ + + + +    ++ +       E+     + +++  + + I++     
Sbjct: 299 AAKEAIDEIQQTLPDNIFIVPSYDSSVFIEASINEVYETLAIAMLMVVLVIYIFLG---N 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +    T+ + +          G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 356 IRATIIPAVTVPVSLVAAFTVMYALGFSINLLTLLALVLAIGLVVDDAIVVLENI---SR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                        +   E     + T++      +P+    G++   F
Sbjct: 413 RIELGEPPLLAAYRGAREVGFAVIATTLVLIAVFVPLVFLQGNIGRLF 460


>gi|307294451|ref|ZP_07574293.1| acriflavin resistance protein [Sphingobium chlorophenolicum L-1]
 gi|306878925|gb|EFN10143.1| acriflavin resistance protein [Sphingobium chlorophenolicum L-1]
          Length = 1034

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/535 (13%), Positives = 159/535 (29%), Gaps = 38/535 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  ++C +G++           +  +P   P                     
Sbjct: 9   RRPVFAAVVAVLLCIVGVV-----GYLSLSIREYPDTDPPIV---------SVETSYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + ++       + R   + + + F  SR  ++ A+ V   + G
Sbjct: 55  AASVVETRITQIIEDGVAGVQGIQNINSTSRDGVSSVNIEFDPSRDIDSAANDVRDRVSG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D     +        +I+      D       + +  + R  +D+    +   
Sbjct: 115 IVEDLPEDALAPEIRKVDADARAILFIVFTRDGWT--PTQIADYLDRNVLDRFSAIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +  G            +  +L     T   +       N       F  +          
Sbjct: 173 RVTGGGDERPSTRIWLNAEKLTAFGITPGDIEAALRAQNVELPAGRFESK---------- 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                      +             +    +        +        I +         
Sbjct: 223 ---------DQNQTLRVERAFSTPEQFAQLVVGRGADGYQVKLGDVARIEQGAENPYTSF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A          ++  +     E A  L A LR    P     +          +   
Sbjct: 274 RSNAATGVGVGIIRQSGANTLEVAEKAKALIAELRTTLPPGMKVTIGSDESLFISRAIDN 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A LV++V+F+ +   +  ++   ++ + ++ T A++ LLG ++ L ++   V
Sbjct: 334 VYDTLGEAALLVVLVIFLFLGSMRATIIPSITVPICLLATCAVMWLLGLSINLLTLLAFV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     + +    +  +G  +    I  + +      V + F  
Sbjct: 394 LAIGLVVDDAIVVLENVYHRIEQGEDPLAAAYLGTRQVGFAIISTTLVVCAVFVPVMFLA 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           G      R  AI M  +I  S F ++S+   +   ++R+ +   +      RF  
Sbjct: 454 GQTGLLFRELAIAMIAAIAFSGFISLSLAPMLCSKLLRHSERSRLSRWVDDRFQR 508



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 61/207 (29%), Gaps = 4/207 (1%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V    +  +    SF++       +  ++    +++      + +  ++   +P
Sbjct: 253 QVKLGDVARIEQGAENPYTSFRSNAATGVGVGIIRQSGANTLEVAEKAKALIAELRTTLP 312

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                             I      +   + + +L+           +    T+ + +  
Sbjct: 313 PGMKVTIGSDESLFISRAIDNVYDTLGEAALLVVLVIFLFLGSMRATIIPSITVPICLLA 372

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T     L G+  NL  + A +  IG  V+D +VV + +                      
Sbjct: 373 TCAVMWLLGLSINLLTLLAFVLAIGLVVDDAIVVLENV---YHRIEQGEDPLAAAYLGTR 429

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +     + T++      +P+    G  
Sbjct: 430 QVGFAIISTTLVVCAVFVPVMFLAGQT 456



 Score = 44.3 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 67/167 (40%), Gaps = 11/167 (6%)

Query: 667  RKGIVGVIISAIAMLIYIWIR--FKWYFALGAITTLILDITKTLGFF--ALFGIEFNLTA 722
              G + ++     +++Y+ +   F+ +   G I   +  +    G    AL G   NL +
Sbjct: 849  TGGSIWLVFGLTILIVYLLLAAQFESFIHPGVIIATV-PLAVAGGVLGLALTGGSVNLYS 907

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ L+G +  + +++ +      +L    +     I ++    L   + TS+A  I 
Sbjct: 908  QIGIVMLVGLAAKNGILIVEFAN---QLRDEGLEIGAAIRQAAARRLRPILMTSIATVIG 964

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             +P+ +    G +   S  + +  G+ +A   ++F+   +   +   
Sbjct: 965  AVPLVIRGGAGAAARHSIGVVVVSGVSLATLITLFLIPILYSRVAGR 1011


>gi|218885144|ref|YP_002434465.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756098|gb|ACL06997.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1048

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 69/679 (10%), Positives = 175/679 (25%), Gaps = 31/679 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  IG++  +        + ++P   P                +     
Sbjct: 9   RPILSNVIGIVLVLIGVVSLIM-----LPISQYPDITPPTVE---------VKAIYPGSN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +     V   +  
Sbjct: 55  SLVLADVVGAPIEQEVNGVEDMLYMSSKSANDGTYTLTITFALGTDIDMATVLVQNRVNV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + K+  +    +    + +            +  S     +  D +       
Sbjct: 115 AMARLPDEVKRQGVTVKKKSTAILQVVTLTSPDGSYDDLFLSNFASLRVRDDLARIPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +    D  RL+ L  TT  +       N        G +   D+   Q+
Sbjct: 175 EAMVFGAASYSMRVWLDAPRLKSLGLTTRDVLNAISEQNVQVAAGQIGAQPAPDTQNFQF 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ +  +S             +    ++  +      R         +           
Sbjct: 235 TVQTQGRLS----------EVSEFEDIIIRTATGGPTGRTVRVRDVARVELGGQTYDLYA 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +  I       +     +        +           +          +   
Sbjct: 285 QKNGKPASLVIIYQLPGANALDVAQKVTATMQRIGKDFPAGVAWDIPYDTTRFVEAAIEQ 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A LVL V+ + +   +  LV    + + ++     +  LG ++ L ++ GI+
Sbjct: 345 VYHTLFEAAVLVLAVILIFLQDWRATLVPATVVPITILGGFMAMMALGFSVNLVTLFGII 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI---TALIATVVLF 478
           L IG+ VD  I+V E          S   +      + +  I    +      +    + 
Sbjct: 405 LAIGIVVDDAIIVVEGAAHHMEHGDSARDATVKAMVQLFGPIIGITLVLSCVFLPASFMS 464

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+ +  + L+S   A ++  A     ++                      
Sbjct: 465 GITGQLYRQFALVIASTALVSALLAATMTPAQCALFLKPIVPGRNAFYRGFNKVYDAVER 524

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSVVR 595
               +         + +     +  +          G          ++A +    S   
Sbjct: 525 FFVALLTTMVHHAWTTMLVFVGLISVTFWFFSTLPTGFLPDEDQGYALVAVQLPGASSQS 584

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              E     D       G  N++        ++        +              Q+  
Sbjct: 585 RTREVTARLDAILAETPGVANWITFGGMSILNNANTPNSATIFVMYKDWSERGDLTQDKL 644

Query: 656 IVGPKISRELIRKGIVGVI 674
           +   +     I++G+V V+
Sbjct: 645 VADLRRKTGTIQEGMVLVV 663



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 50/144 (34%), Gaps = 5/144 (3%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      I  + L +  T    +  G++ N+     ++ LI  +  + +++ +  R+  
Sbjct: 891  SWSAPAAIILVVPLALLGTCIAVSARGMDNNVYTQIGIVLLIALASKNAILIVEFARE-- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +S  +   +     L   + TS A  + V+P+      G +   +    +  G+
Sbjct: 949  LRMHKGMSIPEAAVEGARARLRPILMTSFAFILGVVPLLTASGAGSASQRALGTAVFGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            + +   ++         I     +
Sbjct: 1009 LASTFLAVMFVPVFFTVIQRLSER 1032



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/195 (17%), Positives = 71/195 (36%), Gaps = 13/195 (6%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
              T  ++ + K     V      +T         ++        ++    +LI++    
Sbjct: 309 QKVTATMQRIGKDFPAGVAWDIPYDTTRFVEAAIEQVYHTLFEAAVLVLAVILIFLQ--- 365

Query: 689 KWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            W   L      ++ IT   GF A+   G   NL  +  ++  IG  V+D ++V +    
Sbjct: 366 DWRATLVP--ATVVPITILGGFMAMMALGFSVNLVTLFGIILAIGIVVDDAIIVVE---G 420

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSV-YTSMAAFISVLPMAVWG--GSVIGSFAIPMAF 803
                    S RD   K++ +  G  +  T + + + +    + G  G +   FA+ +A 
Sbjct: 421 AAHHMEHGDSARDATVKAMVQLFGPIIGITLVLSCVFLPASFMSGITGQLYRQFALVIAS 480

Query: 804 GIVVAASSSIFIAAP 818
             +V+A  +  +   
Sbjct: 481 TALVSALLAATMTPA 495


>gi|99034742|ref|ZP_01314671.1| hypothetical protein Wendoof_01000509 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 501

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 185/518 (35%), Positives = 296/518 (57%), Gaps = 26/518 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                      IC   L I LPNF    +       + K RI+LGLDL+GG+ L+L +D 
Sbjct: 4   RLIVKSFSVLCICLFALYITLPNFFDNKL------FISKKRINLGLDLKGGASLLLNIDL 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           D +    L M ++E++  L  + I   +++       ++       +  +  +       
Sbjct: 58  DFYFKEKLSMLANEIKETLLTKNI-ESNVQNS----VITLNSIDDYKKASVLIN------ 106

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                     NL +   +  I I    +  + +IS    +S+  +++R+D++G  E ++Q
Sbjct: 107 ------AISPNLELNRKDSSILISYKPHYKNSLISEVAAESINNVQRRLDKLGTKEVSVQ 160

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM--FGVRFLRDSDGNQ 240
           + G ++IL+Q+PG +D  +++ LLG TAK++FH    N +K   +       L+DS GN 
Sbjct: 161 KQGQNKILVQVPGVEDTKQIKSLLGKTAKLAFHLANTNIAKVQDIDHETTVMLKDSLGNS 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +  K EI G  L  A+  F      P V   FD + ++RF ++T++N+GKP A+VLD 
Sbjct: 221 YPIFRKTEIGGDSLVNASVRFGNLGK-PTVHFKFDSIASKRFAKITKENVGKPFAIVLDN 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            VLT P I + I +G+ +ISGNFT + A  LA +L++G+LP  L I+EE+N+G  LG +S
Sbjct: 280 TVLTVPTIREPILNGEGEISGNFTEKQASELAILLKSGALPAPLKIIEEKNIGPSLGEES 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  A    ++ + LF+I+ YGK G++A  ++F NV+L L++L+LL ATLTLP IAGI
Sbjct: 340 IKAGEMAATISIIAVALFIIITYGKLGVLASVALFSNVVLILSILTLLEATLTLPGIAGI 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+AVD+N+L+ ERIREE +  + V  +++ GF  A  TI DSNIT LIA  ++F  
Sbjct: 400 ALTVGMAVDANVLIFERIREEIKSGKRVERAIEEGFKNAIKTILDSNITTLIAAGIMFII 459

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           G GA+RGF++T+ + IL SMF+AI++ + ++   +  K
Sbjct: 460 GSGAIRGFSVTLSIGILCSMFSAITVTKLLIELCMNPK 497



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  E I+ G +   IS IA+ ++I I +     + A   L  ++   L    L    
Sbjct: 332 GPSLGEESIKAGEMAATISIIAVALFIIITYG-KLGVLASVALFSNVVLILSILTLLEAT 390

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A +   +G +V+  V++++R+R+ +K           I++     +   + +++
Sbjct: 391 LTLPGIAGIALTVGMAVDANVLIFERIREEIKSGKR---VERAIEEGFKNAIKTILDSNI 447

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              I+   M + G   I  F++ ++ GI+ +  S+I + 
Sbjct: 448 TTLIAAGIMFIIGSGAIRGFSVTLSIGILCSMFSAITVT 486


>gi|293605811|ref|ZP_06688184.1| multidrug efflux RND transporter MexD [Achromobacter piechaudii
           ATCC 43553]
 gi|292815806|gb|EFF74914.1| multidrug efflux RND transporter MexD [Achromobacter piechaudii
           ATCC 43553]
          Length = 1050

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 74/632 (11%), Positives = 172/632 (27%), Gaps = 53/632 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL       P   + +FP   P               + +    
Sbjct: 8   RPNFAWVVAIFISLAGLLAI-----PNLPVSQFPVVAPP-------------QVTIAATY 49

Query: 63  DDFVNG-FLQMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +   +  +   L            S      +IT++F      +     V  
Sbjct: 50  PGASASVLVDSVTSVIEEELNGAKNMLYYESSSSSSGSAEITVTFEPGMDPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIG 175
            ++   ++L     +  L         +++       +      +  S    R   ++I 
Sbjct: 110 RIKKAEARLPSAVTQQGLQVEQASSNFLMIYALTYKGEDAHKDVVGLSDYAARHINNEIR 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +   +          +    DP +L  +  + A ++      N       FG R    
Sbjct: 170 RVKGVGKVQFFGA-EAAMRVWIDPQKLLGVGLSVADVNAAIAAQNVQVPAGSFGSRPGSP 228

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  +  K  +                 +    +                 +     
Sbjct: 229 EQELTATLAVKGML-------------DSPEEFGNIVLRANADGSSVHLSDVARVEIGRQ 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  L       A        +   T++        L A         V        
Sbjct: 276 SYDFETRLNGKKSVGAAVQLAPGANAIETVKAVKARLQELSASFPEDVAFSVPFDTSQFV 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             + +    T      LV +V+F+ +   ++ L+    + + ++ T A++S+LG ++ + 
Sbjct: 336 SVAITKVVHTLLEAMVLVFLVMFLFLQNFRYTLIPTIVVPVCLLGTFAVMSVLGFSVNMM 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +      
Sbjct: 396 TMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPREATIKAMEQVSGAIIGITLVLSAVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMK 521
           + L F  G      + F++++ +SIL S F A++   A+               +     
Sbjct: 456 LPLAFMSGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATFLKPIPKGHHDEKKGFFG 515

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +                   R   + V    + ++ ++  +         + +G + +
Sbjct: 516 GFNRAFNRLTGRFEALNTRLVKRTGRYMVIYVAIVAVLAVLYVRVPESFVPAEDQGYVIV 575

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            V        S     +  ++   +S      
Sbjct: 576 DVQLPPGATHSRTDKVVADVEQHLMSLDAMGD 607



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 90/235 (38%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q  D   +    +            +++   + ++   ++++   P 
Sbjct: 262 VHLSDVARVEIGRQSYDFETRLNGKKSVGAAVQLAPGANAIETVKAVKARLQELSASFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K +  ++ + + + + +++  + + + L     + + +  T
Sbjct: 322 DVAFSVPFDTSQFVSVAITKVVHTLLEAMVLVFLVMFLFLQNFRYTLIPTIVVPVCLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               ++ G   N+  +  ++  IG  V+D +VV + +     +    +S R+   K++ +
Sbjct: 382 FAVMSVLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPREATIKAMEQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  +  ++      LP+A   GSV      F++ +A  I+ +   ++     +
Sbjct: 440 VSGAIIGITLVLSAVFLPLAFMSGSVGVIYQQFSLSLAVSILFSGFLALTFTPAL 494



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 67/170 (39%), Gaps = 10/170 (5%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAA 725
            +  +   ++ + + + +   ++  +A+ A   LI+ I       A+   G+  ++     
Sbjct: 869  QAPMLFALAFLVVFLLMVALYE-SWAIPASVMLIVPIGALGSVLAVTVLGMSNDVYFKVG 927

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++T+IG +  + +++ +  +    L     +  D   ++        V TS+A  + V+P
Sbjct: 928  LITIIGLAAKNAILIVEFAK---SLREQGHTLADAAIQAAKLRFRPLVMTSLAFILGVVP 984

Query: 786  MAVWGGSVIGSFAIPMAFGIVVAASSSI---FIAAPILLFIYDWRAKNAR 832
            +A+  G+   S    +  G++    S+     I  PI            R
Sbjct: 985  LALASGAGAASQR-ALGVGVIGGMLSATLLGVIFVPIFFVWVLSLLPKKR 1033


>gi|163758819|ref|ZP_02165906.1| Cation/multidrug efflux pump, RND family protein [Hoeflea
           phototrophica DFL-43]
 gi|162284109|gb|EDQ34393.1| Cation/multidrug efflux pump, RND family protein [Hoeflea
           phototrophica DFL-43]
          Length = 1040

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 75/685 (10%), Positives = 180/685 (26%), Gaps = 41/685 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L  +        + ++P   P                      
Sbjct: 8   RPIFAWVIAIIIMGAGVLSIM-----TLPIAQYPQIAPPTI---------SISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGI-GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + L         S       ITL+F      +    +V   L  
Sbjct: 54  AQTIANTVTQVIEQRLTGLDGLRYFSSSSTSSGTATITLTFETGIDPDIAQVQVQNKLSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    ++  +         +++     +       + +  +    +D     E   
Sbjct: 114 ATALLPETVQRQGVTVQKSAASFMMVIGLISEDGALDQTDLADYLNTNLVDDFSRLEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L       + +       N       FG     +      
Sbjct: 174 EVQVFGA-KYAMRIWLDPVKLSAYGLAPSDVLSAVSTENAQISAGAFGSLPTVEGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                     +                 +           
Sbjct: 233 TITAQSLLT-------------TPEDFEAIVVRAATDGGLVLLKDVARVEIGSENYSTRA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   T E          A        ++          S   
Sbjct: 280 RYNTNPATGMAIRLASGANALDTAELVKTKIEEASAFFPEGVTYVIPYDTTPFVEISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+ + +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VVKTLMEAIVLVFLVMLVFLQNFRATLIPTLAVPVVLLGTFGILAAFGFSINTLTMLAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +      +    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMEEEGLPPLEATRKSMGQITGALIGIALVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F+IT+  ++ +S+  A+++  A+   +++ K        P   F  + D 
Sbjct: 460 GGSTGVIYQQFSITIVSAMGLSVLVALTLTPALCATLLKPKSDHHAKKGPAGWFNRVFDR 519

Query: 538 IA--------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           IA            R    GV    L  +     + T       + +G +   +      
Sbjct: 520 IAGGYGASIGWIVRRPFRVGVIYLGLVGLMGWSFVQTPTAFLPDEDQGILFALIQTPTGA 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                +  +E ++   +  +  + E  F V      G           +K       P  
Sbjct: 580 TAERTQKVVEQVENHFLVKEKDNVESVFGVVGFSFSGQGQNMGLAFVRLKDWSERPSPAQ 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
           + Q            +    +  ++
Sbjct: 640 SAQAIAGRAFPAFMGIKDAMVFPIV 664



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 95/283 (33%), Gaps = 15/283 (5%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S+               +     +    + V A     L +++         +       
Sbjct: 221 SLPTVEGQQLNATITAQSLLTTPEDFEAIVVRAATDGGLVLLKDVARVEIGSENYSTRAR 280

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS---RELIRKG 669
              N    +  +           E+VK KI E         T ++    +      I + 
Sbjct: 281 YNTNPATGMAIRLASGANALDTAELVKTKIEEASAFFPEGVTYVIPYDTTPFVEISIEEV 340

Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +  ++ + + + + + +  + +   L     + + +  T G  A FG   N   + A++ 
Sbjct: 341 VKTLMEAIVLVFLVMLVFLQNFRATLIPTLAVPVVLLGTFGILAAFGFSINTLTMLAMVL 400

Query: 729 LIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            IG  V+D +VV    +R+ +        +   +   KS+ +  G  +  ++      +P
Sbjct: 401 AIGLLVDDAIVVVENVERIMEE-----EGLPPLEATRKSMGQITGALIGIALVLSAVFVP 455

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           MA +GGS       F+I +   + ++   ++ +   +   +  
Sbjct: 456 MAFFGGSTGVIYQQFSITIVSAMGLSVLVALTLTPALCATLLK 498



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 49/432 (11%), Positives = 123/432 (28%), Gaps = 19/432 (4%)

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
              + S+ G+V         N+ +     ++  +  S   S      RA+          +
Sbjct: 601  DNVESVFGVVGFSFSGQGQNMGLAFVRLKDWSERPSPAQSAQAIAGRAFPAFMGIKDAMV 660

Query: 472  IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
               V       G + GF   +      S    ++    ++    +   + S+  + L   
Sbjct: 661  FPIVPPSVPELGMMSGFDFYLEARNGQSHEELLAARNQLLGMASQSPIIGSVRPSGLEDA 720

Query: 532  FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                  I  +   A              +    + +        K    +   A      
Sbjct: 721  AQYNLDIDWRAAGAMGVSASDVAQLLQLAWAGNYVNDFIDRDRIKRVY-IQGEAESRALP 779

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS-- 649
            S +         G +       + ++    Q     +      ++      +        
Sbjct: 780  SDISKWKVRNSSGGLVPFANFAKGSWTYGPQGLIRYNSVNAMQIQGSPAPGSTTGEAMAE 839

Query: 650  ------TIQNTEIVGPKISRELIRKGIVGVII---SAIAMLIYIWIRFK-WYFALGAITT 699
                   +   E+    +S E    G    ++   S  A+ + +   ++ W      +  
Sbjct: 840  IERLASQLPGFEVSWTGLSLEERESGNQAPLLYALSLAAVFLCLAALYESWSIPFAVMLA 899

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + + I   L +    G +  +     +LT++G +  + +++ +  R+    Y    +  D
Sbjct: 900  MPVGILGALLWTLFGGYQNGVFFQVGLLTVVGLTGKNAILIVEFARE---RYEAGEALFD 956

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             + ++  +     + TSMA  + VLP+ +    G     +    +  G +      I   
Sbjct: 957  AVREAARQRFRPIIMTSMAFSLGVLPLVISTGAGSGGRNAIGTSVLGGTISGTVLGILFV 1016

Query: 817  APILLFIYDWRA 828
                + +   R 
Sbjct: 1017 PLFFVLVTRRRK 1028


>gi|238893587|ref|YP_002918321.1| putative acridine efflux pump [Klebsiella pneumoniae NTUH-K2044]
 gi|238545903|dbj|BAH62254.1| putative acridine efflux pump [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 1030

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/614 (10%), Positives = 168/614 (27%), Gaps = 45/614 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  ++  +G +      L    ++++P+  P               + +   
Sbjct: 7   RRPRFAMVIALLLTFVGAVS-----LKLIPVEQYPAITPPV-------------VNVSAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   + +  +  L + L           +       +++++FA     +  A  V 
Sbjct: 49  WPGASASDVAEAIAAPLETQLNGVDHMLYMESTSSDEGTYRLSITFAAGTDADLAAIDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    ++L  + ++N +         ++             +  S     Q  + +  
Sbjct: 109 NRVAQALAQLPAEVQQNGVQVRKRASNLLMGVSLYSPLGTLTPLFVSNYASTQVREALAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +     P R+  L  TT  ++      N        G   + + 
Sbjct: 169 LPGVGEVQMFGARDYSMRIWLRPDRMNALNITTDDVAQALREQNVQGAAGQVGTPPVFNG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     +              +       I       +         I      
Sbjct: 229 QQQTLTINGLGRL-------------NEAASFGEIILRRGAQGQLVRLADVATIELGARS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G  L                +              L           V+        
Sbjct: 276 YSSGAQLNGKASAYLGIYPTPTANALQVASAVRAELNRLHTRFPADLTWEVKFDTTRFVA 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      + A+    V++V+ + +   +  L+   +I +++I T A+L LLG +    S
Sbjct: 336 ATIKEIGVSLALTLLAVVVVVSLFLQSWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  I+L + + VD  I+V E +  +  +      +      +    +  + +  L   V 
Sbjct: 396 LFAIILALTMVVDDAIVVVENVETKMAEGLDRLQATAQALRQIAGPVIATTLVLLAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINP 527
           +       G   R FA+T+  ++ +S   A+++  A+   ++R +        ++ +   
Sbjct: 456 VALLPGIVGELYRQFAVTLSTAMALSSLVALTLTPALCALLLRPRPARPAAVWRAFNRLL 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R            ++ +             + +G +   V    
Sbjct: 516 DGTRDGYGRLVGWMNRRPWLALAATVAAGALVAFSFTSMPKGFLPQEDQGYLFASVQLPE 575

Query: 588 PVDLSVVRSNLESL 601
              L    + +   
Sbjct: 576 AASLERTEAVMAQA 589



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T     L G   N  ++ A++  +   V+D +VV + +    
Sbjct: 362 SWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLSLFAIILALTMVVDDAIVVVENV---E 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
                 +       +++ +  G  + T++      +P+A+     G +   FA+ ++  +
Sbjct: 419 TKMAEGLDRLQATAQALRQIAGPVIATTLVLLAVFVPVALLPGIVGELYRQFAVTLSTAM 478

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNARI 833
            +++  ++ +   +  L +    A+ A +
Sbjct: 479 ALSSLVALTLTPALCALLLRPRPARPAAV 507



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/434 (10%), Positives = 113/434 (26%), Gaps = 19/434 (4%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
                     I +     ++     N        K+      LD   +     +       
Sbjct: 594  MANPAVEDVIQVSGFNILNGTSASNGGFISVMLKDWHQRPPLDAVMADIQRQLLSLPEAT 653

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            ++        G G   GF + +      S      + R ++    ++ ++  +     S 
Sbjct: 654  IMTFAPPTLPGLGNASGFDLRILAQAGQSSAELEQVTREILQLANQHPQLSRVFTTWSSN 713

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSIC---------LLFTHGLNYGIDFKGGIQL 581
               +   +           V         +               + +    + +   + 
Sbjct: 714  VPQLTLTVDRDRAALLDVPVAQIFSSLQTAFGGTRAGDFSRNNRVYHVVMQNEMQWRERA 773

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              ++   V          S  +           + +          S A+          
Sbjct: 774  EQISELYVRSRDGERVRLSNLVTITPTVGAPFIQQYNQFPSVSVSGSAAEGVSSRTAMAA 833

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM----LIYIWIRFKWYFALGAI 697
            + +I+        +     IS +  + G   V I   A+    L  +     W      +
Sbjct: 834  MEQILQAHLPPGYDYAWSGISWQEQQTGNQAVWIVLAAVAMAWLFLVAQYESWTLPASVM 893

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +++  I   L +    G   ++     ++ LI  +  + +++ +  R         +S 
Sbjct: 894  LSVLFAIGGALLWLWTAGYANDVYVQIGLVLLIALAAKNAILIVEFAR---SRREEGLSI 950

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             D   +         + T+++  I ++PM +    G          +  G++VA    I 
Sbjct: 951  VDAAREGATRRFRAVMMTAVSFIIGIMPMMLATGAGAQSRRIIGTTVFSGMLVATMVGIL 1010

Query: 815  IAAPILLFIYDWRA 828
                + +     R 
Sbjct: 1011 FIPSLYVLFQRMRE 1024


>gi|118591574|ref|ZP_01548971.1| multidrug-efflux system, acriflavin resistance protein [Stappia
           aggregata IAM 12614]
 gi|118435902|gb|EAV42546.1| multidrug-efflux system, acriflavin resistance protein [Stappia
           aggregata IAM 12614]
          Length = 1062

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 59/544 (10%), Positives = 145/544 (26%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P  +P + +                  
Sbjct: 10  RPVFAGVLSVLILIAGLI-----GLRALPISEYPEVVPPSIV---------VRAAYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVATPLEEQINGVEGMLYMSSQATSDGVMTLTVTFELGTDPDQAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T       +++                   +    D++   +   
Sbjct: 116 AEPRLPAEVRNLGVTTVKSSPDLMMVVNLTSPDNRYDITYLRNYAVLNIKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +        + ++      N      + G     +    Q 
Sbjct: 176 QVQVFGSGDYSMRVWVDPQKAAGHNLAASDITNAIRQQNVQAAAGIIGASPNLEGVDVQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    A      
Sbjct: 236 SVNAQGRL-------------QTPEEFGNIIVRTGENGEVTRLRDVARIELGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 283 LLDGKPAVAIPVFQAPGSNAIAISDAVVETMNDLQVAMPDGVKYEIVYDTTKFVRSSIEK 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T  ++ + G ++   S+ G+V
Sbjct: 343 VVDTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSIIGTFGVMYVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLNPRQATYKAMKEVSGPIIAIALVLVAVFVPLAFIT 462

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S +IS   ++++  A+   +++        +     F       
Sbjct: 463 GLSGQFYRQFALTIAISTVISAINSLTLSPALAALLLKDHHAPKDWLTRAMDFLFGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 GFNR 526



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 +  +  + + +   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLMLPVAIVMIVPMGVLAALTGVWLTAGDNNIFTQIGLVVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S  +   ++    L   + TSMA  + V+P+ +    G  +  +  + +  G+
Sbjct: 960  -LEFEGRSPVEAAVEASRLRLRPILMTSMAFIMGVVPLVLSTGAGAEMRSAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      IF+     + +       
Sbjct: 1019 IGVTFFGIFMTPVFYVLVRKLSGNR 1043



 Score = 45.8 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T G   +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---IAVPVSIIGTFGVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI---E 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             ++ R    K++ E  G  +  ++      +P+A      G     FA+ +A   V++A
Sbjct: 425 NGLNPRQATYKAMKEVSGPIIAIALVLVAVFVPLAFITGLSGQFYRQFALTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 INS 487


>gi|120597890|ref|YP_962464.1| preprotein translocase subunit SecF [Shewanella sp. W3-18-1]
 gi|146293938|ref|YP_001184362.1| preprotein translocase subunit SecF [Shewanella putrefaciens CN-32]
 gi|120557983|gb|ABM23910.1| protein-export membrane protein SecF [Shewanella sp. W3-18-1]
 gi|145565628|gb|ABP76563.1| protein translocase subunit secF [Shewanella putrefaciens CN-32]
          Length = 298

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 77/280 (27%), Positives = 147/280 (52%), Gaps = 9/280 (3%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R+    ISI   + S+ ++   G N+G+DF GG+   V  +R +  S ++  L +    
Sbjct: 13  WRYISSAISIFLMLASLTIIGVKGFNWGLDFTGGVVTEVQIDRKITSSELQPLLNAAYQQ 72

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           ++S  +      +++R         A T    +   +    +    + NT IVGP++ +E
Sbjct: 73  EVSVVSASEPGRWVLRY--------ADTAQSNVDIAQTLAPLGEIQVLNTSIVGPQVGKE 124

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L  +G + ++++ + +L Y+  RF+W  A GA+  L+ D+   L FFAL  +EFNLT +A
Sbjct: 125 LAEQGGLALLVAMLCILGYLSYRFEWRLASGALFALVHDVIFVLAFFALTQMEFNLTVLA 184

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           AVL ++GYS+ND +++ DR+R+ +      ++ +++ +++I  T  R++ TS    ++V 
Sbjct: 185 AVLAILGYSLNDSIIIADRIRELLIAKPK-LAIQEINNQAIVATFSRTMVTSGTTLMTVG 243

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            + + GG  +  F+I M  GI+    SSI +   +   + 
Sbjct: 244 ALWIMGGGPLEGFSIAMFIGILTGTFSSISVGTSLPELLG 283


>gi|289428337|ref|ZP_06430024.1| protein-export membrane protein SecF [Propionibacterium acnes J165]
 gi|289158486|gb|EFD06702.1| protein-export membrane protein SecF [Propionibacterium acnes J165]
 gi|313807658|gb|EFS46145.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL087PA2]
 gi|313818695|gb|EFS56409.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL046PA2]
 gi|313820465|gb|EFS58179.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL036PA1]
 gi|313822729|gb|EFS60443.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL036PA2]
 gi|313825337|gb|EFS63051.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL063PA1]
 gi|314925074|gb|EFS88905.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL036PA3]
 gi|314960389|gb|EFT04491.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL002PA2]
 gi|314978565|gb|EFT22659.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL072PA2]
 gi|314987983|gb|EFT32074.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL005PA2]
 gi|314989793|gb|EFT33884.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL005PA3]
 gi|315084171|gb|EFT56147.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL027PA2]
 gi|315085514|gb|EFT57490.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL002PA3]
 gi|315088429|gb|EFT60405.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL072PA1]
 gi|327331802|gb|EGE73539.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL096PA3]
 gi|327443579|gb|EGE90233.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL013PA2]
 gi|328753334|gb|EGF66950.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL020PA1]
 gi|332675566|gb|AEE72382.1| protein-export membrane protein SecF [Propionibacterium acnes 266]
          Length = 391

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 11/312 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L    I+  F++ R     I+ +  I S   L   GLN GI+FKGG+Q   
Sbjct: 25  KRKRSFTHALYTGEISYGFIQRRKVWYTITAVVIIISFIGLLVRGLNLGIEFKGGVQFRA 84

Query: 584 LANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            A+     +  VR ++ S    D+         +  V++Q +  ++   T+V E + K  
Sbjct: 85  PAHVATSTIDDVRKSVLSSGAPDMDATEVVSLGSDAVQVQTRALNNDETTKVQEAIAKA- 143

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                  +      VG +   ++  K I  +++  + +++ IW  F+ W  ++ A+  L+
Sbjct: 144 --TGTKMSSVTYSKVGSQWGEQITGKAIKALVVFLVLVMLQIWAYFRHWKMSIAALVALL 201

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDL 760
            D+  T+G +AL G   + + V  VLT++GYS+ D VVV+D++R+N++       +F + 
Sbjct: 202 HDLIVTIGIYALVGFTVSPSTVIGVLTILGYSLYDTVVVFDKVRENVQDIDKRDYTFAEG 261

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            ++++N+ L RS+ T++   + V  +      V G   +    + +  G++V A SSIFI
Sbjct: 262 ANRAVNQVLVRSINTTIVGVLPVAALLFAGAFVLGSGPLEDLGLALFVGMIVGAYSSIFI 321

Query: 816 AAPILLFIYDWR 827
           A P+   + +  
Sbjct: 322 ATPVFTQLREHE 333


>gi|296121604|ref|YP_003629382.1| protein-export membrane protein SecD [Planctomyces limnophilus DSM
           3776]
 gi|296013944|gb|ADG67183.1| protein-export membrane protein SecD [Planctomyces limnophilus DSM
           3776]
          Length = 997

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/258 (24%), Positives = 117/258 (45%), Gaps = 18/258 (6%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D      +   + + D               L  +    V+   + E +K   T++    
Sbjct: 735 DSQPRYDSAIGMVLVDGVSAGGQSTTGKFTELVARVAPDVSNEDLAEALKALATQLANEP 794

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
                      ++ E  +  ++ +++S +A+++YIW RF+  Y+   A+  L  D    L
Sbjct: 795 IFDEFNSFTTSVAAETQQNALLAILLSLVAIVVYIWFRFEKLYYGFAAVAALTHDALVVL 854

Query: 709 GFFAL------------FGIE---FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           G  AL             G+E    N+  +AA+LT+IGYS+ND +V++DR+R+       
Sbjct: 855 GSVALGAWLSQTPIGPILGLEDFKINMGFIAAILTIIGYSLNDTIVIFDRIREIRGKNPN 914

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
                D+I+ S+N+T+ R++ T+    I V+ + ++GG  I +FA     G +    S+I
Sbjct: 915 V--TYDMINLSVNQTMSRTILTATTVLIVVVILYLFGGEGIHTFAYSFIIGTIAGTYSTI 972

Query: 814 FIAAPILLFIYDWRAKNA 831
           FIA P+L ++   +   +
Sbjct: 973 FIANPVLYWLVSRQQAKS 990



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 146/680 (21%), Positives = 265/680 (38%), Gaps = 59/680 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M++  + + L   +  + L   + + +    L           I LG+DL GG++LV ++
Sbjct: 56  MKDIAFRLSLVFFVTALSLTPFIYSGVSGEGL--------LKAIPLGIDLAGGTNLVYQI 107

Query: 61  DEDDFVNG-------FLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIA 112
           D D             ++     +   L   G    ++R++  ++I +    +       
Sbjct: 108 DVDAAKKDGKNLDINTVEQLVQAIGKRLNPSGAEEITIRRVGRDRIEVIIPGAD-----K 162

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
           D V    + +         +  ++       SI+   N +        +  + +   R  
Sbjct: 163 DIVEQKKRLITRL---GSLEFAILANARDHASIISRANQLPDGTDDLRDDKLLVASWRTV 219

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
             G          +     QL   +  +   +L+     +  H+          +    +
Sbjct: 220 ADG-----KNVGQNANDQTQLRVVKRRNDKGELVDVQQFLVVHETPDKQVTGKLLQDAGY 274

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
             D  G   +         I L+  TA +                          D   +
Sbjct: 275 RPDQQGRPAVSFRMTTTGSIRLDALTAKY---------------------APDPVDKFER 313

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV--EER 350
            LA++LDG+V +AP +   + SG  +I+G+F  +    LA +L AG+L + L      E 
Sbjct: 314 RLAILLDGKVYSAPNLRDRLSSGGGEITGDFDRKEVDELAGVLNAGALEVPLIPTPVSEF 373

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            +   LG+D   KG  AI      + +FM V Y   GLVAD  + LN+I+ +  ++ + A
Sbjct: 374 TISPLLGADVQQKGLLAIALSAAAVFIFMAVYYMVSGLVADMCLVLNLIMVVGAMAFIDA 433

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           T TLP +AG+VL IG+AVD+N+L+ ER REE  +  S+  ++  GF +A S I D N+T 
Sbjct: 434 TFTLPGLAGLVLTIGMAVDANVLIYERFREEMARGASLRLTIQNGFDKALSAIVDGNVTT 493

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           LI  V+LF  G  AV+GFA+++ + +  SMF  +   R     I R + +KS+ + P  +
Sbjct: 494 LITAVILFMIGTDAVKGFAVSLFIGLSASMFAILVFGRICFDIIERKRLVKSLSMMPTIK 553

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH-GLNYGIDFKGGIQLGVLANRPV 589
                    + F+  R   +  S++     +  L +    N  IDF GG  + +   +  
Sbjct: 554 LN------GVDFLGMRVPAILFSVVVIAVGMFALVSRGKDNLDIDFTGGTMVTLEFQKSQ 607

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           + +VVR  L++     IS +                  +    R         +   P +
Sbjct: 608 ETAVVREKLDAKFPTAISLEELRLNDESATAGTRFRIRTSLIDREQVRGLINESFADPET 667

Query: 650 TIQNTEIVGPKISRELIRKG 669
            +   ++    I+       
Sbjct: 668 ALTRVQLSFGDITPVTADDS 687



 Score =  119 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 97/253 (38%), Gaps = 5/253 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L             R     L     S  N     +          D      +  ++  
Sbjct: 299 LTAKYAPDPVDKFERRLAILLDGKVYSAPNLRDRLSSGGGEITGDFDRKEVDELAGVLNA 358

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
              E+  + T  +   + P +  ++ +KG++ + +SA A+ I++ + +     L A   L
Sbjct: 359 GALEVPLIPTPVSEFTISPLLGADVQQKGLLAIALSAAAVFIFMAVYY-MVSGLVADMCL 417

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           +L++   +G  A     F L  +A ++  IG +V+  V++Y+R R+ M       S R  
Sbjct: 418 VLNLIMVVGAMAFIDATFTLPGLAGLVLTIGMAVDANVLIYERFREEMA---RGASLRLT 474

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I    ++ L   V  ++   I+ + + + G   +  FA+ +  G+  +   +I +   I 
Sbjct: 475 IQNGFDKALSAIVDGNVTTLITAVILFMIGTDAVKGFAVSLFIGLSASMF-AILVFGRIC 533

Query: 821 LFIYDWRAKNARI 833
             I + +     +
Sbjct: 534 FDIIERKRLVKSL 546


>gi|152969132|ref|YP_001334241.1| putative acridine efflux pump [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953981|gb|ABR76011.1| putative acridine efflux pump [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 1030

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/614 (10%), Positives = 168/614 (27%), Gaps = 45/614 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  ++  +G +      L    ++++P+  P               + +   
Sbjct: 7   RRPRFAMVIALLLTFVGAVS-----LKLIPVEQYPAITPPV-------------VNVSAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   + +  +  L + L           +       +++++FA     +  A  V 
Sbjct: 49  WPGASASDVAEAIAAPLETQLNGVDHMLYMESTSSDEGTYRLSITFAAGTDADLAAIDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    ++L  + ++N +         ++             +  S     Q  + +  
Sbjct: 109 NRVAQALAQLPAEVQQNGVQVRKRASNLLMGVSLYSPLGTLSPLFVSNYASTQVREALAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +     P R+  L  TT  ++      N        G   + + 
Sbjct: 169 LPGVGEVQMFGARDYSMRIWLRPDRMNALNITTDDVAQALREQNVQGAAGQVGTPPVFNG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     +              +       I       +         I      
Sbjct: 229 QQQTLTINGLGRL-------------NEAASFGEIIIRRGAQGQLVRLADVATIELGARS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G  L                +              L           V+        
Sbjct: 276 YSSGAQLNGKASAYLGIYPTPTANALQVASAVRAELNRLHTRFPADLTWEVKFDTTRFVA 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      + A+    V++V+ + +   +  L+   +I +++I T A+L LLG +    S
Sbjct: 336 ATIKEIGVSLALTLLAVVVVVSLFLQSWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  I+L + + VD  I+V E +  +  +      +      +    +  + +  L   V 
Sbjct: 396 LFAIILALTMVVDDAIVVVENVETKMAEGLDRLQATAQALRQIAGPVIATTLVLLAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINP 527
           +       G   R FA+T+  ++ +S   A+++  A+   ++R +        ++ +   
Sbjct: 456 VALLPGIVGELYRQFAVTLSTAVALSSLVALTLTPALCALLLRPRPARPAAVWRAFNRLL 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R            ++ +             + +G +   V    
Sbjct: 516 DGTRDGYGRLVGWMNRRPWLALAATVAAGALVAFSFTSMPKGFLPQEDQGYLFASVQLPE 575

Query: 588 PVDLSVVRSNLESL 601
              L    + +   
Sbjct: 576 AASLERTEAVMAQA 589



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T     L G   N  ++ A++  +   V+D +VV + +    
Sbjct: 362 SWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLSLFAIILALTMVVDDAIVVVENV---E 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
                 +       +++ +  G  + T++      +P+A+     G +   FA+ ++  +
Sbjct: 419 TKMAEGLDRLQATAQALRQIAGPVIATTLVLLAVFVPVALLPGIVGELYRQFAVTLSTAV 478

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNARI 833
            +++  ++ +   +  L +    A+ A +
Sbjct: 479 ALSSLVALTLTPALCALLLRPRPARPAAV 507



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/434 (10%), Positives = 113/434 (26%), Gaps = 19/434 (4%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
                     I +     ++     N        K+      LD   +     +       
Sbjct: 594  MANPAVEDVIQVSGFNILNGTSASNGGFISVMLKDWHQRPPLDAVMADIQRQLLSLPEAT 653

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            ++        G G   GF + +      S      + R ++    +Y ++  +     S 
Sbjct: 654  IMTFAPPTLPGLGNASGFDLRILAQAGQSSAELEQVTREILQLANQYPQLSRVFTTWSSN 713

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSIC---------LLFTHGLNYGIDFKGGIQL 581
               +   +           V         +               + +    + +   + 
Sbjct: 714  VPQLTLTVHRDRAALLDVPVAQIFSSLQTAFGGTRAGDFSRNNRVYHVVMQNEMQWRERA 773

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              ++   V          S  +           + +          S A+          
Sbjct: 774  EQISELYVRSRDGERVRLSNLVTITPTVGAPFIQQYNQFPSVSVSGSAAEGVSSRTAMAA 833

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM----LIYIWIRFKWYFALGAI 697
            + +I+        +     IS +  + G   V I   A+    L  +     W      +
Sbjct: 834  MEQILQAHLPPGYDYAWSGISWQEQQTGNQAVWIVLAAVAMAWLFLVAQYESWTLPASVM 893

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +++  I   L +    G   ++     ++ LI  +  + +++ +  R         +S 
Sbjct: 894  LSVLFAIGGALLWLWTAGYANDVYVQIGLVLLIALAAKNAILIVEFAR---SRREEGLSI 950

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             D   +         + T+++  I ++PM +    G          +  G++VA    I 
Sbjct: 951  VDAAREGATRRFRAVMMTAVSFIIGIMPMMLATGAGAQSRRIIGTTVFSGMLVATMVGIL 1010

Query: 815  IAAPILLFIYDWRA 828
                + +     R 
Sbjct: 1011 FIPSLYVLFQRMRE 1024


>gi|330951991|gb|EGH52251.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae Cit 7]
          Length = 1021

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/525 (11%), Positives = 142/525 (27%), Gaps = 44/525 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPSLPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEDELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIYTLNYKDGAANKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPAS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSAVHLSDVARVAVGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVEQRLTELSVNFPEGVGFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMILVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALI 472
            ++ G+VL IG+ VD  I+V E +     +        +      +    IF   +    
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPPAAATVKAMQQVSGAIFGITLVLAA 454

Query: 473 ATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             + L F GG      + F++++ +SIL S F A++   A+   +
Sbjct: 455 VFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATL 499



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 84/241 (34%), Gaps = 5/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R +E    +++   P 
Sbjct: 262 VHLSDVARVAVGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVEQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + I + + +++  +   + L     + + +  T
Sbjct: 322 GVGFSIPYDTSRFVDVAIDKVIYTLIEAMILVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + + + +              K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV-ERIMAEEGLSPPAAATVKAMQQ 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 441 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 500

Query: 825 D 825
            
Sbjct: 501 K 501



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 53/130 (40%), Gaps = 8/130 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 893  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 950

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 951  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1009

Query: 808  AASSSIFIAA 817
            A    + +  
Sbjct: 1010 ATLLGVVLVP 1019


>gi|325983693|ref|YP_004296095.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Nitrosomonas sp. AL212]
 gi|325533212|gb|ADZ27933.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Nitrosomonas sp. AL212]
          Length = 1066

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/685 (10%), Positives = 183/685 (26%), Gaps = 46/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  IGL+      L +  + +FP   P               + ++ D 
Sbjct: 9   RPIFASVLSIIIVVIGLVA-----LQKLPVAQFPQITPPM-------------VQIDADY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  + +  +  +   L           +        + L+F      +    +   
Sbjct: 51  PGASAEVVAEAVARPIEVQLPGIDNLLYYESTSTNDGHMTMKLTFEIGTDVDIAQVQTQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +    +L  +  +  +         + +   +        +  S   + + +D +   
Sbjct: 111 RQRLAEPQLPDEVVRQGITVKKTSPDLLAVIALSSTDPKHDTVFLSNYTLLRVLDNVKRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP R+ QL  T  +++      N        G        
Sbjct: 171 PGVGDAVIFGGQNYSMRLILDPIRMAQLNITPTEIASVVREQNRDFPAGRIGREPTPKGT 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +S             +  +    I                 +       
Sbjct: 231 ELTIPVITRGRMS-------------EVREFEDMIIRAYPDGAMVRMRDVARVELGAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +       +   T+         +           +          
Sbjct: 278 DLQGRWNGKPNTFLLTFLSPGANALDTVRRVRDEMDKVSNSFPAGVSYDIPYDTTTFIDV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV++V+F+ +   +  L+   ++ +++I TLA + +LG ++   ++
Sbjct: 338 SIREVVKTLAEALILVILVVFLFLQSWRATLIPALAVPISLIGTLAGMDMLGFSINTLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL +G+ VD  I+V E +     +   S   +     +     +    +      V 
Sbjct: 398 FGMVLAVGIVVDDAIVVVENVERHMTQGGLSPRDAAIKAMTEVTGPVIAIVLVLAAVFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FAIT+ LS+ IS F A+++  A+   +++               F 
Sbjct: 458 VAFLGGITGELYKQFAITIALSVAISGFVALTLSPALCALVLKPSHGTPARFWETFNRFF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI------DFKGGIQLGVLANR 587
                             +  L     + ++               + +G     V    
Sbjct: 518 DWAQARYTGAVGAVIKRSVISLAIFAMLIVVIVGLFKTIPGSFLPEEDQGYFITVVQLPE 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++     LE ++    +  +         +          Q  +   +         
Sbjct: 578 GASMTRTIEVLEKIEGYFQTIPSVHSTDTLAGQNFVFGTRGTNQATMFIPLHHWDERTHA 637

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            + +        +   ++    I+ 
Sbjct: 638 DAQVPGMIAAAYQEFAKIPEALILA 662



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 81/253 (32%), Gaps = 11/253 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +  + L  V +   +     ++  N       L           A   + ++  + +T
Sbjct: 793  TTHTMIPLDSVVTTEFNSGPDPVTHFNGFNSALILGGAAPGYSSGQALEALQQVADEILT 852

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                        +   K S +           + + + + +   ++ W      I  +  
Sbjct: 853  PKGYSIDWSGISLQERKASGQST----YVFAFALLMVFLVLAALYESWSIPFAVILAIPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L       +  ++     ++TLIG +  + +++ +      + Y   +S  +   
Sbjct: 909  GILGALLAIWTRDLTNDIYFQIGLVTLIGLAAKNAILIVEFAN---QRYAAGMSLTEAAL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +        + TSMA  + VLP+ +    G +   S    +  G++ A   +IF     
Sbjct: 966  DAARLRFRPIIMTSMAFILGVLPLVIASGAGAASRHSIGTGVFGGMLAATFLAIFFVPLF 1025

Query: 820  LLFIYDWRAKNAR 832
             + I     ++ +
Sbjct: 1026 FVVIGKLMRRDKK 1038



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 88/236 (37%), Gaps = 6/236 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V +  V       Q  D+  +       FL+       +++   R +     K++   P
Sbjct: 261 MVRMRDVARVELGAQSYDLQGRWNGKPNTFLLTFLSPGANALDTVRRVRDEMDKVSNSFP 320

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                +            IR+ +  +  + I +++ +++    W   L     + + +  
Sbjct: 321 AGVSYDIPYDTTTFIDVSIREVVKTLAEALILVILVVFLFLQSWRATLIPALAVPISLIG 380

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           TL    + G   N   +  ++  +G  V+D +VV + +     +    +S RD   K++ 
Sbjct: 381 TLAGMDMLGFSINTLTLFGMVLAVGIVVDDAIVVVENV--ERHMTQGGLSPRDAAIKAMT 438

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           E  G  +   +      +P+A  G   G +   FAI +A  + ++   ++ ++  +
Sbjct: 439 EVTGPVIAIVLVLAAVFVPVAFLGGITGELYKQFAITIALSVAISGFVALTLSPAL 494


>gi|307727274|ref|YP_003910487.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1003]
 gi|307587799|gb|ADN61196.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1003]
          Length = 1061

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/548 (12%), Positives = 155/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G++        +  +  +P  +P + +          H       
Sbjct: 10  RPIFAGVLSVLVLLAGVISLF-----KLPISEYPEVVPPSVV---------VHAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAEAVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTNPDLATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGVTTIKSSPTLTMVVHLISPNNRYDMTYLRNYALLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N      + G          Q 
Sbjct: 176 EVQLWGSGDYAMRVWLDPQKVAQRGLTATEVVNAIREQNIQVAAGVIGASPSVPGTQLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      I    +      
Sbjct: 236 SVNARGRL-------------KTEGEFGDIIVKTAPDGGVTYLRDIARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +        L           +          S   
Sbjct: 283 LLDNKPAVALAINQAPGANSLAISDEVRSAMKELAQDMPAGVEYKIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLSARDATYKAMQEVSGPIIAIALTLVAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   ++R    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAMLLRSHGAKEDFLTRVMNRVLGRFFK 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 GFNKVFHR 530



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSVLSALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGHTPLSAAIEASRLRLRPILMTSIAFIMGVVPLVLSTGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 78/201 (38%), Gaps = 9/201 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      ++ + + +   V    + +           ++   +  + +  I +++++   
Sbjct: 306 SDEVRSAMKELAQDMPAGVEYKIVYDPTQFVRSSIEAVVHTLLEAIALVVIVVIVFLQTW 365

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N
Sbjct: 366 RASIIPL---IAVPVSIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           +      +S RD   K++ E  G  +  ++      +P+A      G     FA+ +A  
Sbjct: 423 I---ENGLSARDATYKAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIS 479

Query: 805 IVVAASSSIFIAAPILLFIYD 825
            V++A +S+ ++  +   +  
Sbjct: 480 TVISAFNSLTLSPALSAMLLR 500


>gi|332307722|ref|YP_004435573.1| acriflavin resistance protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175051|gb|AEE24305.1| acriflavin resistance protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1036

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/629 (10%), Positives = 182/629 (28%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   G++           L  +P   P              +      
Sbjct: 9   KRPVFASVVNLLLVVFGIVAVTF-----LSLREYPDVDPPIV---------SINTTYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       + R  ++ I + F  SR  +  ++ V   +  
Sbjct: 55  SAAIIESRITQLLEDRISGIEGIKNIESTSRNGRSSIDVEFNLSRDIDAASNDVRERVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L        +  +T  +  IV      D      +E +    R  +D++ ++E   
Sbjct: 115 ALNNLPDQADPPEVSKSTSDDDVIVWYNLRSDN--MSVMELTDYADRYLVDRLSVAEGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D + +     + A +       N                     
Sbjct: 173 NVRLGGGRSYAMKVWLDRNAMAARGISVADIEQVIRAENVELPAGEVQSNQRDFDVRV-- 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A                 +            +           
Sbjct: 231 -----------------ARSYLSPEDFSKLPVKAGIDGYLIRLGEVATVELGAEDDETEF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     + +++ +       A      ++         +    +      S + 
Sbjct: 274 RGNGVNMIGLGITKQSKANTLEVARAAQAAIDEIKLTLPDNIFIVPSYDSSVFIEASINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   +V++V+++ +   +  ++   ++ ++++    ++  LG ++ L ++  +V
Sbjct: 334 VYETLAIAMLMVVLVIYLFLGNVRATIIPAVTVPVSLVAAFTVMYALGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +   G       +  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVVLENISRRIELGEPPLLAAYRGAREVGFAVIATTLVLIAVFVPLVFLQ 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA+ +  ++  S  TA++++  +   ++   K  +   + +++ F   +  
Sbjct: 454 GNIGRLFTEFALAIAAAVAFSSVTALTLIPMLSSKLLTKSKRTTGLNSWMNKSFTKFEGS 513

Query: 539 AIQFMRARF-----WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + +           + I +        +          + +G   + + A        
Sbjct: 514 YFKVLGKTIHQPILMALLILVSVVGLLRLVEILPSEFVPKEDRGNFFIQIQAAEGASFKE 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
              +++ ++   + + +       LVRL 
Sbjct: 574 NSRSMKKVEEIILPYLDSGEATRVLVRLP 602



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 62/161 (38%), Gaps = 7/161 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I   +++ + + + +  +F+ W      + ++ L +          G+  N+ +   ++ 
Sbjct: 853  IFIFLMALVIVYLILAAQFESWVHPWVIMLSVPLALVGAFIGLYFAGMTLNIYSQIGLVM 912

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG +  + +++ +      +L    I F   + ++    L   V TS     S LP+  
Sbjct: 913  LIGLAAKNGILIVEFAN---QLRDAGIEFELALKRAAMLRLRPIVMTSFTTVFSSLPLVF 969

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                G        + +  G++V+   ++F+      ++   
Sbjct: 970  ASGAGSESRTVIGMVIFSGVLVSTLLTLFVVPTAYYWLARK 1010



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 59/168 (35%), Gaps = 6/168 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A    ++ +K  + + + +    ++ +       E+     + +++  + + +++     
Sbjct: 299 AAQAAIDEIKLTLPDNIFIVPSYDSSVFIEASINEVYETLAIAMLMVVLVIYLFLG---N 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +    T+ + +          G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 356 VRATIIPAVTVPVSLVAAFTVMYALGFSINLLTLLALVLAIGLVVDDAIVVLENI---SR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                        +   E     + T++      +P+    G++   F
Sbjct: 413 RIELGEPPLLAAYRGAREVGFAVIATTLVLIAVFVPLVFLQGNIGRLF 460


>gi|316934538|ref|YP_004109520.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Rhodopseudomonas palustris DX-1]
 gi|315602252|gb|ADU44787.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris DX-1]
          Length = 1051

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 89/683 (13%), Positives = 183/683 (26%), Gaps = 45/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +GL+      +    + ++P+ +P               + +    
Sbjct: 9   RPVFAAVISILIVLVGLIS-----MRALPVAQYPAIVPPE-------------VRISASY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  L   +   E +              I+++FA     +     V  
Sbjct: 51  PGASAETIAETVAAPLEQQINGVENMLYMRSTSTGAGTLSISVTFAIGTDPDQNTINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q     L  +  +  +V        + +   +        I      +   ID++  +
Sbjct: 111 RVQRATPLLPAEVARQGVVVQKRSSDILQVLTMSSPNGRYDTIFIGNYALINVIDELRRT 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P +L Q   T   ++      N       FG     D  
Sbjct: 171 PGVGDASLFGATDYSMRVWLRPDKLAQFNLTPGDVAAAIREQNAQFAAGRFGEEPQSDPT 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  +                    +    I   +             +       
Sbjct: 231 AFTYSVTTQGR-------------FADPSEFENIIIRSDEFGGALRVKDVARVELGALNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +              L+A                    
Sbjct: 278 SFSATYNGAPTVPIGVYLQPGANALEVSANVLATMDRLQARFPEGLEYRNPFTTTRFVEA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+ V+F+ +   +  L+   ++ +++I T A +  LG ++ L ++
Sbjct: 338 SIRRVIQTFIEAIVLVVAVVFLFMQNARATLIPVIAVPVSIIGTFAGMYALGFSINLLTM 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSV--FCSLDMGFSRAYSTIFDSNITALIATV 475
            G+VL IG+ VD  I+V E I    R  +      ++      +   I  S     +   
Sbjct: 398 FGLVLSIGIVVDDAIVVLENIERIMRTEKKPAREAAIKAMDQVSGPVIATSLSLCAVFVP 457

Query: 476 VLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPL 528
           V F  G  G   R FA+T+ +S++IS   A+++  A+   I++           +     
Sbjct: 458 VSFLGGLAGELYRQFAVTIAVSVVISSIVALTLTPALATLILKPDHRPPARPFRLFNRGF 517

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +    MR     + I       ++ L  T   +       G  L V +  P
Sbjct: 518 EWLTDKYGAVVAFSMRRVAVSLTIVGAMIGATLVLFNTMPGSLVPAEDQGRVLMVTSLPP 577

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                    +  +    I           +               V  +  K  +E    
Sbjct: 578 AASLSRTREIAGITANTIKDMPEVLGVVTMSGFDVLSSAQKTNAGVSFITLKDWSERKAP 637

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
            +       G      L R G+V
Sbjct: 638 ESDARQFAPGLSRLNALFRDGVV 660



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L  +  + + I  T       G   NL  +  ++  IG  V+D +VV + +     +
Sbjct: 365 RATLIPVIAVPVSIIGTFAGMYALGFSINLLTMFGLVLSIGIVVDDAIVVLENI--ERIM 422

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVV 807
            T     R+   K++++  G  + TS++     +P++  G   G +   FA+ +A  +V+
Sbjct: 423 RTEKKPAREAAIKAMDQVSGPVIATSLSLCAVFVPVSFLGGLAGELYRQFAVTIAVSVVI 482

Query: 808 AASSSIFIAAPILLFIYD 825
           ++  ++ +   +   I  
Sbjct: 483 SSIVALTLTPALATLILK 500



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 69/169 (40%), Gaps = 10/169 (5%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G  G +   + + + +  ++ +W   L  +T +   +   +    L G+E ++     +
Sbjct: 869  TGYQGFLFGVLMVFLILAAQYERWTLPLAVLTAVPFALFGAIVAIWLRGLENDIYFQIGL 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG +  + +++ +      + +   +   D   ++        + TS+A  + V+P+
Sbjct: 929  VTLIGLAAKNAILIVEFA---ARRHREGVPVFDAALEAARLRFRPIIMTSLAFILGVMPL 985

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAA-SSSIFIAAPILLFIYDWRAKNA 831
            A+    G +   S    +  G++     +SIF+  P+   +       A
Sbjct: 986  AIASGAGSASQHSIGTGVIGGMIAVTVLASIFV--PLFFRLLTRSRPKA 1032


>gi|197121720|ref|YP_002133671.1| protein-export membrane protein SecF [Anaeromyxobacter sp. K]
 gi|196171569|gb|ACG72542.1| protein-export membrane protein SecF [Anaeromyxobacter sp. K]
          Length = 402

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/361 (22%), Positives = 149/361 (41%), Gaps = 9/361 (2%)

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           I  +    +   ++L+           +       + +     +  A        + +  
Sbjct: 23  IAVALSLVVNLAIILWSLPFVHGLNMGVDFAGGTEMEVQFGKPVDPA--DIRKTVEDLGF 80

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +  +          I+  R            +      L   G  +  +F   I   
Sbjct: 81  KGASVQTYGAEAEHTFLIRVERISLLTEADVARVADAVKTKLPVAGFAFNPEFGDKIDFQ 140

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                             +++ D+  +           +  Q      Q  +   + +  
Sbjct: 141 FSGAVDAAAVRAAVEAAGVKVRDVREEQGLTAGTRSYAVITQGIQENVQAGLKAQLGESQ 200

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                   ++  E VGP   REL  +G+  ++ +   +++YI +RF + F+ G +  ++ 
Sbjct: 201 P------NVRRVEYVGPAAGRELQAQGLKAILYAIGLIVVYIGLRFDFRFSPGVVIAMLH 254

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D   T+G+F + G EFNLT++A +LT++GYSVND VV+YDR+R+N        S  D+++
Sbjct: 255 DAIMTMGYFTISGREFNLTSIAVILTVVGYSVNDTVVIYDRIRENQAKL-RGRSLSDIVN 313

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            SINE LGR+  TS A  +S++ + V+G   I  F++ M FGIV    S+ FIAAP+ ++
Sbjct: 314 LSINEVLGRTFLTSFATALSLIGLLVYGVGTIFDFSMAMLFGIVSGTYSTWFIAAPMTIW 373

Query: 823 I 823
           +
Sbjct: 374 L 374


>gi|313838868|gb|EFS76582.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL086PA1]
          Length = 391

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 11/312 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L    I+  F++ R     I+ +  I S   L   GLN GI+FKGG+Q   
Sbjct: 25  KRKRSFTHALYTGEISYGFIQRRKVWYTITAVVIIISFIGLLVRGLNLGIEFKGGVQFRA 84

Query: 584 LANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            A+     +  VR ++ S    D+         +  V++Q +  ++   T+V E + K  
Sbjct: 85  PAHVATSTIDDVRKSVLSSGAPDMDATEVVSLGSDAVQVQTRALNNDETTKVQEAIAKA- 143

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                  +      VG +   ++  K I  +++  + +++ IW  F+ W  ++ A+  L+
Sbjct: 144 --TGTKMSSVTYSKVGSQWGEQITGKAIKALVVFLVLVMLQIWAYFRHWKMSIAALVALL 201

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDL 760
            D+  T+G +AL G   + + V  VLT++GYS+ D VVV+D++R+N++       +F + 
Sbjct: 202 HDLIVTIGIYALVGFTVSPSTVIGVLTILGYSLYDTVVVFDKVRENVQDIDKRDYTFAEG 261

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            ++++N+ L RS+ T++   + V  +      V G   +    + +  G++V A SSIFI
Sbjct: 262 ANRAVNQVLVRSINTTIVGVLPVAALLFAGAFVLGSGPLEDLGLALFVGMIVGAYSSIFI 321

Query: 816 AAPILLFIYDWR 827
           A P+   + +  
Sbjct: 322 ATPVFTQLREHE 333


>gi|182415172|ref|YP_001820238.1| acriflavin resistance protein [Opitutus terrae PB90-1]
 gi|177842386|gb|ACB76638.1| acriflavin resistance protein [Opitutus terrae PB90-1]
          Length = 1048

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/659 (12%), Positives = 185/659 (28%), Gaps = 45/659 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  IGLL        +  +  +P                         
Sbjct: 9   RRPVVCLVASILIVLIGLLS-----FRRLPVREYPDIDSPII---------SVSTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +    +      + +++IT+ F   R     A+ V   +  
Sbjct: 55  SAEVIESKITEPLEKEISSIDGIRVVRSLSLEQRSEITVEFNLRRDVNEAANDVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  +  T      I+      D       E      R  + +I       
Sbjct: 115 ARRQLPDEVLEPQVTKTEADADPIMGFSLASD--RYSRQELYDIADRFVVQRIQTVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  RL     T A +       N    G          +   Q 
Sbjct: 173 AVQIRG-PRYAMRLWIDSDRLAAHELTVADVERALQQQNVEIPGGRIESVTREFTVRTQG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +  E                      ++        +        +           
Sbjct: 232 SLVEVAEFE--------------------NLILAVRNGYQVKFSDIGRVELGQNDYRGES 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++Q +     +       +++A         +   +      S + 
Sbjct: 272 YYRGVPTVGVQVFRQSQSNLLDLADGVKAQLPLIQASLPKGVTIDIGFDSSVFVDRSVAE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A LV++++F+ +   +   +   +I ++VI + A++S LG +L + ++  +V
Sbjct: 332 VYKTLWEAATLVILMIFVFLRDWRATFIPLLAIPVSVIGSFAIMSWLGFSLNVLTLLALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I       +    +   G  +    I  + +T     + + F  
Sbjct: 392 LAVGLVVDDAIVMLENIYRRIEGGEPPIRAAVHGARQVAFAIIATTLTLAAVFLPVAFQS 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    F +T+ +S+L+S F A+++   +       + +K+  +    +   + +  
Sbjct: 452 GQTGRLFFEFGVTLAISVLVSAFVALTLTPML-----SSRMLKARLVGGHVKHGWLYEKT 506

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              F         +          +L   G    +     +QL        D S  R+  
Sbjct: 507 EPFFEGMNRRYAAMLNWTLRHKFWVLLGAGAVAALGPIFYLQLQRELTPLEDRSAFRAYF 566

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            +       F ++   K   + L     +   +             + P    +     
Sbjct: 567 IAPVGSTPEFGHYYAGKMEQMLLDVPEVERTFRRSGDSNRAFMFVTLKPWEQRERKAQQ 625



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 53/148 (35%), Gaps = 6/148 (4%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + +L+       W      +  + + +  +    +  G   N+  + A++  +G  V
Sbjct: 339 AATLVILMIFVFLRDWRATFIPLLAIPVSVIGSFAIMSWLGFSLNVLTLLALVLAVGLVV 398

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +D +V+ + +    +                 +     + T++      LP+A   G   
Sbjct: 399 DDAIVMLENI---YRRIEGGEPPIRAAVHGARQVAFAIIATTLTLAAVFLPVAFQSGQTG 455

Query: 795 G---SFAIPMAFGIVVAASSSIFIAAPI 819
                F + +A  ++V+A  ++ +   +
Sbjct: 456 RLFFEFGVTLAISVLVSAFVALTLTPML 483



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 60/164 (36%), Gaps = 12/164 (7%)

Query: 675  ISAIAMLIYIWIRFK-WYFAL----GAITTLILDITKTLGF-FALFGIEFNLTAVAAVLT 728
            ++ +   + +  +F+ W   +    G I  L   +       F    +  NL +   ++ 
Sbjct: 857  LALVFTFLILAAQFESWIHPITIFTGIILALAGGVIVLYCTRFWGTAMTDNLYSRFGLIM 916

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +    N        +F    + SI       + T++A  +  +P+A 
Sbjct: 917  LIGLVAKNGILIVE--FANQLQLEGRNAFEAAYEASILR-FRPIIMTAIATILGAVPIAF 973

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                G        I +  G+ +A   ++F+     + +  +  K
Sbjct: 974  ASGAGAETRNPMGIVVVGGLSIATFLTLFVVPIFYVLVDHFAVK 1017


>gi|91793094|ref|YP_562745.1| acriflavin resistance protein [Shewanella denitrificans OS217]
 gi|91715096|gb|ABE55022.1| acriflavin resistance protein [Shewanella denitrificans OS217]
          Length = 1031

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/629 (11%), Positives = 184/629 (29%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++  +GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISILLIVLGLVA-----FDKLPLREYPNIDPPIV---------SIETSYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F  +R  E  A+ V   + G
Sbjct: 55  SASVVESRITQLIEDRLSGVEGIRHVSSSSSDGRSSVTLEFEITRDIEAAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  +     +      +  I+      D      +E +    R  +D+  + +   
Sbjct: 115 LLDRLPDEADTPAIYKANGGDEVIMWLNLVSD--QMSTLELTDYASRYLVDRFSVIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 QIHVGGGKVYAMRIWVDREALASRNLTVADVEAALRSENVELPAGSIESKERHFTLRVER 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               + +                       +                 +           
Sbjct: 233 SFRTETD-------------------FANLVIAHGDDGYLVRLGDVAKVEIGSEEERIIF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     + ++  +       A  L   +               +      S   
Sbjct: 274 RGNKESMIGIGITKQSTANTLDVARAANELVDEINPTLPAGMEIKRSYDSSVFIEASIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFLAIILVIIVIYLFLGSVRAMLIPAITVPVSLLATFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEQGDSPLKAAFLGAREVAFAVVATTLVLVAVFMPITFLE 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+TM  +++ S   A+++   M   +          ++ +D         
Sbjct: 454 GDIGKLFKEFAVTMSAAVMFSSIVALTLTPMMCSKLLKPAGEDPWLVRQVDKGMTRLSQA 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +   F R     + I   F + +  L          + +G + L V   +      
Sbjct: 514 YERTLTQAFKRPFLVSLIIITAFGLSAFLLKQVPQEFAPQEDRGSMFLMVNGPQGASFEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           +   ++ ++   +        K  L+R  
Sbjct: 574 IEKYMDEVEGRLMPLVASGDIKRLLIRAP 602



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 73/205 (35%), Gaps = 13/205 (6%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   +++ +   +   + +    ++ +       E+ +   + +I+  I + +++     
Sbjct: 299 AANELVDEINPTLPAGMEIKRSYDSSVFIEASIDEVYQTLFLAIILVIIVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T       G   NL  + A++  IG  V+D +V+ + +    +
Sbjct: 356 VRAMLIPAITVPVSLLATFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                 S          E     V T++      +P+    G +      FA+ M+  + 
Sbjct: 413 RIEQGDSPLKAAFLGAREVAFAVVATTLVLVAVFMPITFLEGDIGKLFKEFAVTMSAAV- 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
               SSI +A  +   +     K A
Sbjct: 472 --MFSSI-VALTLTPMMCSKLLKPA 493



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 61/156 (39%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L    L G   N+ +   ++ L+G 
Sbjct: 860  VLALGIVFLVLAAQFESYIHPMVIMLTVPLATLGALLGLWLTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F+  I ++ ++ L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDRGLEFQQAILQASSQRLRPILMTGITTAAGAIPLVMASGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +  GI++A   ++ +          
Sbjct: 977  GAETRFVIGVVVISGILLATFFTLVVIPVAYNLFAR 1012


>gi|254369202|ref|ZP_04985214.1| preprotein translocase [Francisella tularensis subsp. holarctica
           FSC022]
 gi|157122152|gb|EDO66292.1| preprotein translocase [Francisella tularensis subsp. holarctica
           FSC022]
          Length = 645

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 162/548 (29%), Positives = 281/548 (51%), Gaps = 55/548 (10%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + +L   PN+L          A+  N ++LGLDLRGG +L+LE D    ++  L   
Sbjct: 108 IIAMSMLSNSPNWLS---------ALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNS 158

Query: 74  SDELRSFLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFL 119
              + S  K   I + S  +                  ++++ A+S   + +   ++   
Sbjct: 159 LSIILSAAKDNSINISSSTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLST-- 216

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                        N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E+
Sbjct: 217 -----DFIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEA 271

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDG 238
           ++ + G +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G
Sbjct: 272 SVAQAGDNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNG 331

Query: 239 N----QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                 Y ++      G  + GA+ +   +T  P+V +  D   A  F ++T  NIG P+
Sbjct: 332 RGYQSYYSLKGTAVAGGADIIGASPSIYRQTGAPIVMVELDRSAASHFRQITGKNIGNPM 391

Query: 295 AVVLDGRVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAML 335
            V+L                           V       G          + A  LA M+
Sbjct: 392 GVMLVNTTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMI 451

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           ++G+L + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ 
Sbjct: 452 KSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVIALIAVVVFILVYYRVFGIIANIALV 511

Query: 396 LNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           +N+IL +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +
Sbjct: 512 MNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHI 571

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G+ +A++TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+
Sbjct: 572 GYEKAFTTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFV 631

Query: 515 IRYKKMKS 522
              +K   
Sbjct: 632 YGKRKKLE 639



 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  +I  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIILALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|26989537|ref|NP_744962.1| multidrug efflux RND transporter MexD [Pseudomonas putida KT2440]
 gi|24984412|gb|AAN68426.1|AE016475_5 multidrug efflux RND transporter MexD [Pseudomonas putida KT2440]
          Length = 1042

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/703 (10%), Positives = 178/703 (25%), Gaps = 64/703 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL+      P   + ++P+  P               + +    
Sbjct: 8   RPNFAWVVALFISLAGLLVI-----PSLPVAQYPNVAPP-------------QISITASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   L   +G+  +      N   ++ ++F      +     V  
Sbjct: 50  PGASAKVMVESVTSIIEQSLNGAKGLLYYESTNNSNGVAEVMVTFEPGTDPDMAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGI 176
            L+   +++        L         +++                +    R   +++  
Sbjct: 110 RLKQAEARMPQAVLTQGLKVEQASSGFLLIYALTSTAGNRGDTTALADYAARNINNELLR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP +L     +   ++      N       FG       
Sbjct: 170 VPGVGKLQFFAS-EAAMRVWVDPQKLVGYGLSIDDINSAIRGQNVQVPAGSFGSTPGASE 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                      +                 +      
Sbjct: 229 QELTATLAVQGTL-------------DTPEAFAGIVLRANPDGSSVRLGDVARMAIGSEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +   T        A L           V         
Sbjct: 276 YNLSARLNGHPAVAGAVQLAPGANAIQTATLVKERLAELSQFFPEGVEYSVPYDTSRFVD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV +V+F+ +   ++ LV    + + ++ TL ++ LLG ++ + +
Sbjct: 336 VAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLVPSIVVPVCLLGTLMIMKLLGFSVNMMT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +      +    I    +      +
Sbjct: 396 MFGMVLAIGILVDDAIVVVENVERLMAEEGLSPVEATIKAMGQVSGAIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---------I 523
            L F  G      + F++++ +SIL S F A++   A+   +++                
Sbjct: 456 PLAFMSGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLKPVPHGHHEKAGFFGAF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +              +    RA  W +    +  +     L         +  G   + V
Sbjct: 516 NRGFARVTERYSLLNSELVARAGRWMLAYVGILVVLGYSYLRLPEAFVPAEDLGYSVVDV 575

Query: 584 LANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                                   R  + +  I      +  G+   L    ++      
Sbjct: 576 QLPPGASRVRTDHTAEALEKFLMSRDAVANSFIVSGFSFSGQGDNAALAFPTFKDWSQRD 635

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           + +  E     I      +       V P     L   G   +
Sbjct: 636 KAQSAEAETAAINAQFAANGDGAITAVMPPPIDGLGNSGGFAL 678



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++S +                 +++    +++    ++++  P 
Sbjct: 261 VRLGDVARMAIGSENYNLSARLNGHPAVAGAVQLAPGANAIQTATLVKERLAELSQFFPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 321 GVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLVPSIVVPVCLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S  +   K++ +
Sbjct: 381 LMIMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERLMAEEGLSPVEATIKAMGQ 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      LP+A   GSV      F++ +A  I+ +   ++     +   + 
Sbjct: 439 VSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLL 498

Query: 825 D 825
            
Sbjct: 499 K 499



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  + +     +    L G+  ++     ++T+IG +  + +++ +  ++  
Sbjct: 889  SWAIPLTVMLIVPIGALGAVWAVTLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGI 805
                   S  D   ++        V TSMA  + V+P+A+  G+      +    +  G+
Sbjct: 949  ---EKGYSLCDAAIEAARLRFRPIVMTSMAFILGVVPLAIASGAGAASQRAIGTGVIGGM 1005

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            + A    +       +++     + 
Sbjct: 1006 LSATLLGVVFVPVCFVWVLTLLKRK 1030


>gi|289209481|ref|YP_003461547.1| acriflavin resistance protein [Thioalkalivibrio sp. K90mix]
 gi|288945112|gb|ADC72811.1| acriflavin resistance protein [Thioalkalivibrio sp. K90mix]
          Length = 1052

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/520 (11%), Positives = 144/520 (27%), Gaps = 38/520 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   ++   GL+           L  +P   P                V    
Sbjct: 9   RRPVLAIVFNLLLITFGLIA-----YDNLPLREYPDVDPPVVT---------IDTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++       S    Q++IT+ F  SR  +  A+ V   +  
Sbjct: 55  SGEIIEREVTQRLEDRVAGIEGIRFVESSSEDGQSRITIEFNLSRDLDAAANDVREAVGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I+    +       A+E +    R  ID+I + +   
Sbjct: 115 ALRDLPEDIDPPEVTKADADANPILWLNLSST--TMDALELADYAERHLIDRISVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D   L     T   ++      N               +     
Sbjct: 173 LVRRGGARSYAMRIWVDREALAARELTVTDIADALGEENVELPAGRLESVEREFTVRV-- 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +     G +         +           
Sbjct: 231 -----------------DRQYRTPEDFANLVLKRGEGGQLVRLSDVAEVNIGADTERSEF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       ++  +          +AA L+         +          G+   
Sbjct: 274 RGNGEDMIGLGIIRQSNANVLDVANGVKAMAADLQDSLPEGTSLVTTYDESVFIEGAIRE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A+    V+ V+++ +   +  ++   ++ + +      ++L G ++ L ++  +V
Sbjct: 334 VYITLAVATAAVVFVIWLFLGSWRATIIPAVTVPVAITAAFIGINLFGFSVNLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD +I++ E I     + +    +   G  +    I  +    +   V L F  
Sbjct: 394 LAVGLVVDDSIVMLENIHRRIERGEPGLLAAYRGAGQVGFAIVATTSVLIAVFVPLAFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           G        FAI M +++  S   A+++   +   ++   
Sbjct: 454 GMVGRLFTEFAIAMAIAVFFSSLVALTLAPVLSGRLMHKG 493



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ L +   L    L G   N+ +   ++ LIG +  + +++ +      
Sbjct: 877  SFVHPFVIMLTVPLAVVGALLGLHLTGQTLNIYSQIGMVMLIGLAAKNGILIVEFAN--- 933

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
            +L      F   + ++    L   + T++      +P+ +  G          + +  G+
Sbjct: 934  QLRDRGRDFDSAVVEAARMRLRPVLMTALTTVAGSIPLILASGPGEETRFVIGVAVFSGV 993

Query: 806  VVAASSSIFIAAP 818
            + A   ++F+   
Sbjct: 994  LFATLFTLFVIPA 1006



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 86/240 (35%), Gaps = 7/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + V LS V             F+    +   L  ++    + +     ++ +   + 
Sbjct: 249 EGGQLVRLSDVAEVNIGADTERSEFRGNGEDMIGLGIIRQSNANVLDVANGVKAMAADLQ 308

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
           + +P  T   T           IR+  + + ++  A++  IW+    W   +    T+ +
Sbjct: 309 DSLPEGTSLVTTYDESVFIEGAIREVYITLAVATAAVVFVIWLFLGSWRATIIPAVTVPV 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            IT       LFG   NL  + A++  +G  V+D +V+ + +    +             
Sbjct: 369 AITAAFIGINLFGFSVNLLTLLALVLAVGLVVDDSIVMLENIH---RRIERGEPGLLAAY 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
           +   +     V T+       +P+A   G V      FAI MA  +  ++  ++ +A  +
Sbjct: 426 RGAGQVGFAIVATTSVLIAVFVPLAFLEGMVGRLFTEFAIAMAIAVFFSSLVALTLAPVL 485


>gi|296447725|ref|ZP_06889641.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylosinus trichosporium OB3b]
 gi|296254757|gb|EFH01868.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylosinus trichosporium OB3b]
          Length = 1054

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/552 (10%), Positives = 149/552 (26%), Gaps = 41/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  +G +        +  + ++PS  P               + + V  
Sbjct: 8   RPVFAWVLGLIVMLLGGISIF-----RLPIAQYPSIAPP-------------QISITVTY 49

Query: 63  DDFVNGF-LQMYSDELRSF---LKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                   +      +      L      + + +   + +I L+FA          +V  
Sbjct: 50  PGASAQTVMDTVVRPILQQMSGLDGLEYLLSTAQSNGSMEIDLTFAQGVDPNIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  +  +  +      +  +++     D     AI+    +     D +   
Sbjct: 110 KLSLAQPNLPTEVTQQGIKVNKSVKSFMLIVGVYSDDGAMSAIDIDDYVSSNLKDPLTRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +   T   ++      N        G       +
Sbjct: 170 TGVGDFTSFGS-EYAMRIWLDPDKLNKYSLTVGDVTSALTAQNVQVSSGELGGLPASRGN 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +                 +    +        +   +    +       
Sbjct: 229 RLDAAIIGPARL-------------ETPEQFENILLKVNPSGSQVRLMDVARVEIGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +   T          L     P                
Sbjct: 276 STTSLYNGKPFGALALKLAPGANQLSTEAAVRAELGRLEKFFPPGLKLAYPLDTEPFITL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+ + +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 336 SIEEVVKTLFEAVALVFVVMLVFLQNFRSTLIPTIAVPIVLLGTFGVLAAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL +GL VD  I+V E +    + K  S   +           +    +      + 
Sbjct: 396 LAMVLAVGLLVDDAIVVVENVERLMSEKRLSPRDATRASMDEISGALVGIALVLSAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  ++ +S+  A+ +  A+   +++     S   +    +F 
Sbjct: 456 MAFFGGSTGVIYRQFSVTIVSAMALSVLVALILTPALCATLLKEPARDSGPRSRFFAWFN 515

Query: 534 IPDCIAIQFMRA 545
                  +  + 
Sbjct: 516 RTFARLTERYKN 527



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/208 (18%), Positives = 85/208 (40%), Gaps = 8/208 (3%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
              A    L  ++K     + L+   +TE        E+++     V +  + ML+++  
Sbjct: 302 TEAAVRAELGRLEKFFPPGLKLAYPLDTEPFITLSIEEVVKTLFEAVALVFVVMLVFLQ- 360

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +   L     + + +  T G  A FG   N   + A++  +G  V+D +VV + +  
Sbjct: 361 --NFRSTLIPTIAVPIVLLGTFGVLAAFGYSINTLTMLAMVLAVGLLVDDAIVVVENV-- 416

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    +S RD    S++E  G  V  ++      LPMA +GGS       F++ +  
Sbjct: 417 ERLMSEKRLSPRDATRASMDEISGALVGIALVLSAVFLPMAFFGGSTGVIYRQFSVTIVS 476

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + ++   ++ +   +   +    A+++
Sbjct: 477 AMALSVLVALILTPALCATLLKEPARDS 504



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/268 (10%), Positives = 82/268 (30%), Gaps = 12/268 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +   + +            +L    +   N       L           
Sbjct: 777  RMSPSDLARWHVRNSSGKMAPFDAFLDGAWTLGPQKVESYNGLTSFEILGAPAPGHSTGE 836

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +++K    +    T  + E              +  + ++ + +L    +   
Sbjct: 837  AMATMRRLIEKLPPGVGYEWTGLSYEEQKSGSQ----TAALYAISLT-VVVLCLAALYES 891

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W   L  +  + L +   +      G+  ++     +LT +G +V + +++ +  +    
Sbjct: 892  WAIPLSVLLVVPLGVIGAIVATLNSGLANDVYFQVGLLTTVGLAVKNAILIVEFAK---A 948

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
             +    +  +    +  E L   + TS+A     LP+      G +   +    +  G++
Sbjct: 949  FFDNGATLAEAAIAAAGERLRPILMTSIAFVAGTLPLVFATGAGSASRIAIGTAVVGGML 1008

Query: 807  VAASSSIFIAAPILLFIYD-WRAKNARI 833
             A   +I+      + +   +R +  R+
Sbjct: 1009 SATLLAIYFVPAFFVAVSRAFRVRPNRV 1036


>gi|126665295|ref|ZP_01736277.1| putative protein-export membrane protein [Marinobacter sp. ELB17]
 gi|126629923|gb|EBA00539.1| putative protein-export membrane protein [Marinobacter sp. ELB17]
          Length = 541

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 221/532 (41%), Positives = 316/532 (59%), Gaps = 16/532 (3%)

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           +PG  DPS +R+LLGTTAKM+FH V    ++            ++G +Y +E +V + G 
Sbjct: 1   MPGVADPSSIRKLLGTTAKMTFHWVANGKNEALMNLPGS----AEGERYSLERRVAMEGQ 56

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
           H++ A   F+  + +PVV+   D  GAR+F E+TR NIG+PLAVVLDG+V+TAPVI  AI
Sbjct: 57  HISDAQLGFNSDSGQPVVNFKLDSNGARQFGEMTRANIGRPLAVVLDGKVITAPVIRSAI 116

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
             G  +ISG FT   A  LA +LR G+LP+ L ++EER VG DLGSD+I  G    + G 
Sbjct: 117 AGGSGEISGGFTSAEASNLALLLRGGALPVPLKVLEERTVGPDLGSDAIAMGLSTGLLGA 176

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
            L+  FM+ LYG+WG++A   + +NV L   +LS+LGATLTLP IAGI+L IG+AVD+NI
Sbjct: 177 ALVFAFMLGLYGRWGVIACVGLAVNVGLVFGVLSVLGATLTLPGIAGIILTIGMAVDANI 236

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           L+NERIREE R   S   ++  GFSRAYSTI DSN+T LIA  +LF FG G VRGFA+T+
Sbjct: 237 LINERIREETRNGLSAPMAVRQGFSRAYSTILDSNVTTLIAISLLFMFGSGPVRGFAVTI 296

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
           G+ +L SMFTAI++ R +M + +R    + + I  +     +     + F+R RF G+ +
Sbjct: 297 GIGLLTSMFTAIAVTRLLMEWRVRAMGRQPLAIQGIKTLDRL-AERGVDFLRGRFIGLAL 355

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S L SI SI L F  GL YG+DF GG  + V A     +  +R  L +  +G  + Q   
Sbjct: 356 SALLSIGSIVLFFGSGLQYGVDFTGGTLVEVRAEN-TSVEQLRQALATAGLGSAAIQESG 414

Query: 613 GEKNFLVRLQ------YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                   ++                 V++ +K  +  + P +     ++VGPK+S    
Sbjct: 415 PADAGQYLVRLPVLNHSASDSDSKVESVVDSLKTAVRTLSPTAEFPKVDMVGPKVSGGFS 474

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL----GFFALF 714
              I+ ++++   ML Y+WIRF+ +FA  A  T+ LD+TKT+    G FA+ 
Sbjct: 475 DATILAILLAGAGMLAYLWIRFESHFAAAATLTIALDLTKTIDLHCGAFAVL 526



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 77/166 (46%), Gaps = 6/166 (3%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGI 716
           GP +  + I  G+   ++ A  +  ++  +  +W   + A   L +++    G  ++ G 
Sbjct: 157 GPDLGSDAIAMGLSTGLLGAALVFAFMLGLYGRW--GVIACVGLAVNVGLVFGVLSVLGA 214

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              L  +A ++  IG +V+  +++ +R+R+  +     +S    + +  +      + ++
Sbjct: 215 TLTLPGIAGIILTIGMAVDANILINERIREETR---NGLSAPMAVRQGFSRAYSTILDSN 271

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +   I++  + ++G   +  FA+ +  G++ +  ++I +   ++ +
Sbjct: 272 VTTLIAISLLFMFGSGPVRGFAVTIGIGLLTSMFTAIAVTRLLMEW 317


>gi|83592222|ref|YP_425974.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodospirillum rubrum ATCC
           11170]
 gi|83575136|gb|ABC21687.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodospirillum rubrum ATCC
           11170]
          Length = 1052

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/589 (12%), Positives = 162/589 (27%), Gaps = 42/589 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ ++I   GL+  +        +  +P  +P               ++++   
Sbjct: 10  RPIFAGVISTVILLAGLISMV-----LLPISEYPEVVPP-------------SVIVKAQF 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S +   +    +T+SF      +     V  
Sbjct: 52  PGANPKVIAQTVATPLEEQINGVEDMLYMSSQAASDGTMTLTISFKLGTDPDLATQLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L    ++  + T        ++            +      +    DQ+   
Sbjct: 112 RVNQALTRLPEVTRQLGVTTVKSSPDLTMVVHLTSPNERYDMLYLRNYALLNVKDQLAKI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP ++ +   T  ++       N      + G        
Sbjct: 172 QGIGSVQLFGSGDYAMRIWLDPQKVAERGMTATEVIAAIRRQNVQVAAGVIGGPPYGTGV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V  +  ++                     I     G           I    A  
Sbjct: 232 AVQVPVNAQGRLTDADEFRE--------------IIIKRDGGVVTRLKDVARIDLDAAQY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L                +            A L+          +         G
Sbjct: 278 GLRSLLDNKPAVAIPVFQAPGSNAIEISNQVRATMAELKKSFPEGLDYAIAYDPTVFVRG 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+ + +   +  ++   ++ +++I T A++ L G ++   S+
Sbjct: 338 SIEAVVHTLLEAVALVVIVVILFLQTWRASIIPLLAVPISIIGTFAVMHLFGFSINALSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +        S   +           I    +      V +
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERNIENGLSPRDATLKAMREVTGPIIAIALVLCAVFVPI 457

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFF 532
            F     G   R FA+T+  S +IS F ++++  A+ + ++R +      +         
Sbjct: 458 AFISGLTGQFYRQFALTIAFSTVISAFNSLTLSPALAVTLLRGEGAPKDALTRGMDRVLG 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                    F  +                  +  +    G  + G  Q+
Sbjct: 518 PFFRGFNRVFHASSHGYGRGVGGILGRKSLAMLVYVGLLGATYLGFAQV 566



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 91/251 (36%), Gaps = 17/251 (6%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +       +RS L++     I      G     +  Q +   +  +    E +   I 
Sbjct: 269 RIDLDAAQYGLRSLLDNKPAVAIPVFQAPGSNAIEISNQVRATMAELKKSFPEGLDYAIA 328

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
               +    + E V   +   +    IV ++               W  ++  +  + + 
Sbjct: 329 YDPTVFVRGSIEAVVHTLLEAVALVVIVVIL-----------FLQTWRASIIPLLAVPIS 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+      +S RD   K
Sbjct: 378 IIGTFAVMHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI---ENGLSPRDATLK 434

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ E  G  +  ++      +P+A      G     FA+ +AF  V++A +S+ ++  + 
Sbjct: 435 AMREVTGPIIAIALVLCAVFVPIAFISGLTGQFYRQFALTIAFSTVISAFNSLTLSPALA 494

Query: 821 LFIYDWRAKNA 831
           + +        
Sbjct: 495 VTLLRGEGAPK 505



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              +  L  I  + L +   +    L G + N+     +  LIG +  + +++ +  R+  
Sbjct: 901  SLFLPLAIILIVPLCLLSAITGVWLTGGDNNMFTQIGLFVLIGLACKNAILIVEFARE-- 958

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L            ++    L   + TS+A  + V+P+ +    G  +  +  I +  G+
Sbjct: 959  -LEIDGQDTVPAAIEAARLRLRPILMTSIAFIMGVVPLVISSGAGAEMRHAMGIAVFSGM 1017

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +      +F+     + +     +
Sbjct: 1018 LGVTVFGLFLTPVFYVLMRSLEKR 1041


>gi|39935442|ref|NP_947718.1| RND multidrug efflux transporter MexB [Rhodopseudomonas palustris
           CGA009]
 gi|39649294|emb|CAE27814.1| RND multidrug efflux transporter MexB [Rhodopseudomonas palustris
           CGA009]
          Length = 1055

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/690 (10%), Positives = 179/690 (25%), Gaps = 49/690 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I      +     L    + ++P   P               + +   
Sbjct: 8   KRPIFAWVIAIVIM-----LGGLLALTTLPVSQYPEIAPPT-------------IQISAS 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      +   +        +   S    Q  IT++F +    +    +V 
Sbjct: 50  YPGADAQTVENSVTKVIEQGMTGLDNLDYMAASSTSSGQADITITFTNKANPDVAQMQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ V + L    +   L  T      +++             + +  +     D++  
Sbjct: 110 NKLQLVTALLPSIVQTTGLSVTKSTSGFLMIVGFVSTNGKMSETDIADYVKSTLNDRLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    DP +L +   T A ++      N        G    R  
Sbjct: 170 VEGVGNTQLFGGG-YAMRIWLDPEKLLKYALTPADVTAAIQAQNTQVSAGQLGGLPARKG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V  +  +                 +    +   +             +      
Sbjct: 229 QQLNATVTAQSRL-------------QTPAQFRNIVVKSDTNGSMVRINDVATVELGAED 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                            +     +   T      +   L          +          
Sbjct: 276 YTSASTYNGLAATGLAINLATGANAIRTAAAVKAVIDGLTPTLPQGIKVVYPYDTTPFVE 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   +  L+   ++ + ++ T  +L+L G ++   +
Sbjct: 336 ISIGDVTRTLVEAVVLVFVVMLVFLQNFRATLIPTLAVPVVLLGTFGVLALAGYSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +    + +  S   +     +     +           V
Sbjct: 396 MFAMVLAIGLLVDDAIVVVENVERVMHDEGLSPREATSRSMTEITGALIGITTVLSAVFV 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R FA+T+  ++++S+  A+ +  A+   I+R  K           F 
Sbjct: 456 PMAFFGGSVGVIYRQFAVTIVSAMVLSVIVALVLTPALCATILRRPKPHDEKRGVFGWFN 515

Query: 533 LIPDCIAIQFM--------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +       +         R R   +   ++    +   +         + +G + + V 
Sbjct: 516 RVLGRGTDAYQAGARGMLRRPRQGLIAFVLVIVAAAALFIRLPTSFLPEEDQGLLMVSVQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                        L+ +    +  +    +    V      G           ++     
Sbjct: 576 LPVGATTDRTERVLDKVTRHFLDHETKAVDGLMTVTGFSFSGAGQNVGMAFVRLRDFAER 635

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                +          +   +    +  + 
Sbjct: 636 KDTDLSASAVAERAMVVFAGIRDAKVFALA 665



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 62/146 (42%), Gaps = 9/146 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T G  AL G   N   + A++  IG  V+D +VV + +     
Sbjct: 363 FRATLIPTLAVPVVLLGTFGVLALAGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERV 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFG 804
           ++   +S R+   +S+ E  G  +   +   +    +PMA +GGSV      FA+ +   
Sbjct: 421 MHDEGLSPREATSRSMTEITGALI--GITTVLSAVFVPMAFFGGSVGVIYRQFAVTIVSA 478

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830
           +V++   ++ +   +   I      +
Sbjct: 479 MVLSVIVALVLTPALCATILRRPKPH 504



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 72/256 (28%), Gaps = 9/256 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +      V  N    +            G    + ++G     ++    P  S    
Sbjct: 778  MQPEDLDLWYVRNNAGAMVPFSAFASGRWTFGSPRLERYNGAAAVQIQGDAAPSVSSGAA 837

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                                           +      + +++  + +     +   W  
Sbjct: 838  MTEIDRLVAGLPAGFGHEWTALSRQEQLSGNQAASLYAISILVVFLCLA---ALYESWSI 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + ++ + +   L    L G   ++     +LT IG +  + +++ +     +    
Sbjct: 895  PFAVMLSVPVGVFGALAAALLLGQSNDVYFKVGLLTTIGLAAKNAILIIEFA---IARQQ 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              +        +  + L   + TS A  + V P+ V    G +   S  I +  G++ A 
Sbjct: 952  AGLGLHRATLLAARQRLRPILMTSFAFILGVTPLVVASGAGSAAQNSIGIGVMGGMLAAT 1011

Query: 810  SSSIFIAAPILLFIYD 825
               IF    + + +  
Sbjct: 1012 VLGIFFVPLLFVVVRR 1027



 Score = 44.3 bits (102), Expect = 0.080,   Method: Composition-based stats.
 Identities = 60/530 (11%), Positives = 131/530 (24%), Gaps = 59/530 (11%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R     +I + ++              +      P       +           + L V
Sbjct: 533  LRRPRQGLIAFVLVIVAAAA-----LFIRLPTSFLPEEDQGLLM---------VSVQLPV 578

Query: 61   DEDDFVNGFLQMYSDELRS--------------FLKKEGIGVFSMRQIQNKITLS-FADS 105
                      +   D++                 +                + L  FA+ 
Sbjct: 579  ---GATTDRTERVLDKVTRHFLDHETKAVDGLMTVTGFSFSGAGQNVGMAFVRLRDFAER 635

Query: 106  RFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
            +  +  A  V      V + +       L     E   +       +  +     ++ M 
Sbjct: 636  KDTDLSASAVAERAMVVFAGIRDAKVFALAPPAIEGLGTSNGFDFYLKDINGAGHDKLMA 695

Query: 166  IIRQRIDQIGISESTIQRLGSHRILIQLPGEQ-DPSRLRQLLGTTAKMSFHKVLPNNSKK 224
            +  Q +  +G S        + +          D  +   L    A ++    +      
Sbjct: 696  VRDQLLGAVGKSRLLSGTRPNGQDDTPQFSIDIDQEKASALGLNLADVNSTLSIAW---- 751

Query: 225  GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
                         G+ Y+ +         +    A       + +               
Sbjct: 752  -------------GSSYVNDFIDRGRVKRVYLQAAADFRMQPEDLDLWYVRNNAGAMVPF 798

Query: 285  VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
                +           R   A  +     +  +  SG    E   ++A +          
Sbjct: 799  SAFASGRWTFGSPRLERYNGAAAVQIQGDAAPSVSSGAAMTEIDRLVAGLPAGFGHEWTA 858

Query: 345  NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
               +E+  G    S        AI   +V + L  +            S+ + V   LA 
Sbjct: 859  LSRQEQLSGNQAASLY------AISILVVFLCLAALYESWSIPFAVMLSVPVGVFGALAA 912

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
              LLG +  +    G++  IGLA  + IL+ E      +    +  +  +   +    I 
Sbjct: 913  ALLLGQSNDVYFKVGLLTTIGLAAKNAILIIEFAIARQQAGLGLHRATLLAARQRLRPIL 972

Query: 465  DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
             ++   ++    L      G  A     I +   +L +    I  V  + 
Sbjct: 973  MTSFAFILGVTPLVVASGAGSAAQNSIGIGVMGGMLAATVLGIFFVPLLF 1022


>gi|171317845|ref|ZP_02907023.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MEX-5]
 gi|171096965|gb|EDT41834.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MEX-5]
          Length = 1060

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/564 (12%), Positives = 157/564 (27%), Gaps = 35/564 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVD 61
             +  +L   I   GL+      L    + ++P+ +P               +       
Sbjct: 11  PRFAAVLSIFITLFGLVT-----LNFLPVAQYPNIVPPT-----------VQVTTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             D +   +    ++  + ++             +  IT++F                +Q
Sbjct: 55  SADTIARTVATPLEQAINGVENMDYISSQSTSNGSLSITVTFKVGTDMNVAQMLTENRVQ 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L  + ++  +         ++            A   S  +I    D+I      
Sbjct: 115 DTLSRLPEEVQRQGVTVKKTIPAVLLGIHPYSPDGSRDAQYISNYMILHVKDEIARLPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      +    DP +      + A++       N            +R S   Q
Sbjct: 175 SDITTTGERQFAMRIWIDPDKAAVHDISAAQILAALRAQNAQVSAGTVNDPTVRGSGAYQ 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +E    ++                +    I   +                  +     
Sbjct: 235 ISIEALGRLT-------------TPEQFEDIIVKSDSDGHVTRIRDIGRAELGSSDYGTL 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                     +        +              LR          +          S  
Sbjct: 282 AYADKSPSASSWVYAIPGSNVVTVEHEVLDKMKELRKSFPSGLDYKIVYDPTTFVSQSID 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV+ V+F+ +   +  ++   +I ++++ T  +L+  G ++   S+ G+
Sbjct: 342 EVIKTIFIAILLVVGVVFVFLQSWRATIIPVVAIPVSLMGTFTILAACGISINNLSLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF---SRAYSTIFDSNITALIATVVL 477
           VL +G+ VD  I+V E +    R   S   +        S A   I  +     +    +
Sbjct: 402 VLAVGIVVDDAIVVVENVERNMRLGMSPREAAHRTMDEVSEALIAIALTLCAVFVPAAFI 461

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA T+  S +IS F ++++  A+   +++          P  RF  +   
Sbjct: 462 TGISGLFFKQFATTIAASTVISCFVSLTLSPALCAILLKPHAEYHSHTEPRGRFNHLVQS 521

Query: 538 IAIQFMRARFWGVGISILFSICSI 561
              +F  A  W        +   +
Sbjct: 522 GFGKFNAAFEWLSSNYGRMTSRFV 545



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 65/163 (39%), Gaps = 7/163 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              +A+ + + +  +++ W   L  +  + + +  +     + G+  ++ A    + L+G 
Sbjct: 888  GAAALCVFLVLAAQYESWKMPLAIVLIVPMCLLASSTGLHVRGMPIDILAQIGFVVLVGL 947

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +V + +++ +  R   +         D    +    L   + TS A  + V P+AV    
Sbjct: 948  AVKNAILIVEFAR---QREHHGDDTEDAAVSAAKTRLRPILMTSFAFILGVAPLAVATGA 1004

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +  S    + FG++      +     I  FI ++   +A+
Sbjct: 1005 GAEMRQSLGTAVLFGMIGVTVFGLLFTPAIYTFIRNFNNPDAK 1047



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 80/224 (35%), Gaps = 9/224 (4%)

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                       + +               ++ ++K     +    + +      +   E
Sbjct: 283 YADKSPSASSWVYAIPGSNVVTVEHEVLDKMKELRKSFPSGLDYKIVYDPTTFVSQSIDE 342

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           +I+   + +++    +         W   +  +  + + +  T    A  GI  N  ++ 
Sbjct: 343 VIKTIFIAILLVVGVVF---VFLQSWRATIIPVVAIPVSLMGTFTILAACGISINNLSLF 399

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++  +G  V+D +VV + + +NM+L    +S R+   ++++E     +  ++      +
Sbjct: 400 GLVLAVGIVVDDAIVVVENVERNMRL---GMSPREAAHRTMDEVSEALIAIALTLCAVFV 456

Query: 785 -PMAVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               + G S +    FA  +A   V++   S+ ++  +   +  
Sbjct: 457 PAAFITGISGLFFKQFATTIAASTVISCFVSLTLSPALCAILLK 500


>gi|295130721|ref|YP_003581384.1| export membrane protein SecF [Propionibacterium acnes SK137]
 gi|291375838|gb|ADD99692.1| export membrane protein SecF [Propionibacterium acnes SK137]
          Length = 391

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 148/312 (47%), Gaps = 11/312 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L    I+  F++ R     ++ +  I S   L   GLN GI+FKGG+Q   
Sbjct: 25  KRKRSFTHALYTGEISYGFIQRRKVWYTVTAVVIIISFIGLLVRGLNLGIEFKGGVQFRA 84

Query: 584 LANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            A+     +  VR ++ S    D+         +  V++Q +  ++   T+V E + K  
Sbjct: 85  PAHVATSTIDDVRKSVLSSGAPDMDATEVVSLGSDAVQVQTRALNNDETTKVQEAIAKA- 143

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                  +      VG +   ++  K I  +++  + +++ IW  F+ W  ++ A+  L+
Sbjct: 144 --TGTKMSSVTYSKVGSQWGEQITGKAIKALVVFLVLVMLQIWAYFRHWKMSIAALVALL 201

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDL 760
            D+  T+G +AL G   + + V  VLT++GYS+ D VVV+D++R+N++       +F + 
Sbjct: 202 HDLIVTIGIYALVGFTVSPSTVIGVLTILGYSLYDTVVVFDKVRENVQDIDKRDYTFAEG 261

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            ++++N+ L RS+ T++   + V  +      V G   +    + +  G++V A SSIFI
Sbjct: 262 ANRAVNQVLVRSINTTIVGVLPVAALLFAGAFVLGSGPLEDLGLALFVGMIVGAYSSIFI 321

Query: 816 AAPILLFIYDWR 827
           A P+   + +  
Sbjct: 322 ATPVFTQLREHE 333


>gi|313827632|gb|EFS65346.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL063PA2]
 gi|315108544|gb|EFT80520.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL030PA2]
          Length = 391

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 11/312 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L    I+  F++ R     I+ +  I S   L   GLN GI+FKGG+Q   
Sbjct: 25  KRKRSFTHALYTGEISYGFIQRRKVWYTITAVVIIISFIGLLVRGLNLGIEFKGGVQFRA 84

Query: 584 LANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            A+     +  VR ++ S    D+         +  V++Q +  ++   T+V E + K  
Sbjct: 85  PAHVATSTIDDVRKSVLSSGTPDMDATEVVSLGSDAVQVQTRALNNDETTKVQEAIAKA- 143

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                  +      VG +   ++  K I  +++  + +++ IW  F+ W  ++ A+  L+
Sbjct: 144 --TGTKMSSVTYSKVGSQWGEQITGKAIKALVVFLVLVMLQIWAYFRHWKMSIAALVALL 201

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDL 760
            D+  T+G +AL G   + + V  VLT++GYS+ D VVV+D++R+N++       +F + 
Sbjct: 202 HDLIVTIGIYALVGFTVSPSTVIGVLTILGYSLYDTVVVFDKVRENVQDIDKRDYTFAEG 261

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            ++++N+ L RS+ T++   + V  +      V G   +    + +  G++V A SSIFI
Sbjct: 262 ANRAVNQVLVRSINTTIVGVLPVAALLFAGAFVLGSGPLEDLGLALFVGMIVGAYSSIFI 321

Query: 816 AAPILLFIYDWR 827
           A P+   + +  
Sbjct: 322 ATPVFTQLREHE 333


>gi|167574214|ref|ZP_02367088.1| multidrug efflux protein [Burkholderia oklahomensis C6786]
          Length = 1043

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/622 (12%), Positives = 170/622 (27%), Gaps = 41/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+            + ++P   P              +       
Sbjct: 8   RPVFAWVISLFIMLGGIFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +   + +        +    Q  + L+F      +  A  V   L+ V
Sbjct: 54  AQVIEESVTAVIEREMNGVPGLLYTSATSSAGQASLYLTFKQGVSADLAAVDVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      +   ++     +     A++         +  +   E   +
Sbjct: 114 EARLPEPVRRDGISVEKAADNIQLVVSLTSEDGRMSAVQLGEYASANVVQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L  L  T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKLAALNLTASDIATAVRAHNARVTIGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +S                                +      I            
Sbjct: 233 VLADAPLS-------------TPDAFGAIALRARADGSTLYLRDVAKIEFGGNDYNYPSF 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +             A  +   T +        L     P     +          S    
Sbjct: 280 VNGKTATGMGIKLAAGSNAVATEKRVRATMDELSKFFPPGVTYQIPYETSSFVRVSMQKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+F+ +   +  L+    + + ++ T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFAVMFLFMQNFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+ + +SI  S F A+S+  A+   +++       +      +F      
Sbjct: 460 GAVGNIYRQFALALAVSIGFSAFLALSLTPALCATLLKPVADDHHEKRGFFGWFNRFVAR 519

Query: 539 AIQFMRAR---------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           A      R          W V    L +  ++ L          + +G   + V+  +  
Sbjct: 520 ATNRYTRRVGQVLKRPLRWLVVYGALTAGAALLLTKLPTAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNF 611
            L+    ++  ++      +  
Sbjct: 580 PLAETMQSVRRVEEYVRKKEPS 601



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 73/203 (35%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    ++ + K     V       T        ++++   I   ++    M +++ 
Sbjct: 300 ATEKRVRATMDELSKFFPPGVTYQIPYETSSFVRVSMQKVVTTLIEAGVLVFAVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +   +   K++ +  G  V  ++      +PMA +GG+V      FA+ +A
Sbjct: 416 -ERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALALA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 70/210 (33%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           I  I              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAAGHSSGEAMAAIERIASTLPAGVGYAWSGQSFEERLSGAQAPMLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W      +  + L +   +    L G+  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPFAVMLVVPLGVIGAVAGVTLRGMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ +  +    L    +S  D   ++    L   V TS+A  + VLP+A   G       
Sbjct: 938  LIVEVAKD---LVAQRMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFATGAASGAQV 994

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +    +  G+V A   +IF+     + +  
Sbjct: 995  AIGTGVLGGVVSATLFAIFLVPLFFVCVGR 1024


>gi|297571397|ref|YP_003697171.1| protein-export membrane protein SecF [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931744|gb|ADH92552.1| protein-export membrane protein SecF [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 365

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 135/312 (43%), Gaps = 13/312 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     ++  +  R     +++   + S+        N GI+F+GG Q  V  
Sbjct: 4   MYKIGNDLYTGRSSVNIIGRRKLWFSLAMALMVLSLLAFVVKSPNTGIEFRGGSQFTVSG 63

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
               +       ++++   D       G     +R+Q    D      V + +       
Sbjct: 64  TSITEHKPAYDVIKTVGKDDSPRVASLGS--SSIRVQTVKLDDKQTQEVRDALASAYK-- 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
               +   +  VGP    +++ K +  +II  + + + + I F+ W  A+GA   LI D 
Sbjct: 120 -VDPSKVTSTFVGPSWGADILSKAVRAMIIFMVLISLVLTIYFRSWAIAVGANGALIHDF 178

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFRDLID 762
             TLG +   G E     V  +LT++GYS+ D VVV+D++R+N +      + ++ +  +
Sbjct: 179 IVTLGVYWWAGFEITPATVIGLLTIMGYSLYDTVVVFDKVRENTEHITNQHTYTYEETAN 238

Query: 763 KSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +++N+TL RS+ TS+   + V  +      V G   +   A+ M  G++++  SS+ IAA
Sbjct: 239 QAMNQTLIRSLNTSITGLLPVAAILFIGVYVLGADTLRDLALVMFVGMLLSTLSSLIIAA 298

Query: 818 PILLFIYDWRAK 829
           P+ + +     K
Sbjct: 299 PLAVVLAMRNPK 310


>gi|288942219|ref|YP_003444459.1| acriflavin resistance protein [Allochromatium vinosum DSM 180]
 gi|288897591|gb|ADC63427.1| acriflavin resistance protein [Allochromatium vinosum DSM 180]
          Length = 1038

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/617 (12%), Positives = 175/617 (28%), Gaps = 43/617 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  L +FP   P                         V   +    +E  + ++    
Sbjct: 29  FDRLPLRQFPDIDPPVV---------SIDTTYRGAAAAVVETRITQVIEERIAGVEGIRT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +    +++I++ F+  R  ++ A+ +   + G+  +L  +     +      +  IV
Sbjct: 80  VESTSEDGRSRISIEFSIDRDVDSAANDIRDRVSGIIDQLPSEADPPEIQKVDSNDDVIV 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               + +       E S    R  +D+  + +   +          +    D   L    
Sbjct: 140 WFNLSSE--RMTVPELSDYARRYLVDRFSVLDGVARVRVGGEQTYAMRVWLDRHALAARG 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A +       N             + S                              
Sbjct: 198 LTVADVEDALRAENIELPAGEVESIDRQFSVRVDRAFNTA-------------------D 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                 + +               +       ++  +     +
Sbjct: 239 DFARLVLKRGADGYLVRLGDVARVERGTEEERTFFRGNGKPMVGLGIIKQSTANTIAVAQ 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A      +        +      +      +      T AI  GLV++V+F+ +   + 
Sbjct: 299 AAKAEVERVNQSLPDGMILSQSFDSSVFVEEAIDEVYKTLAIAIGLVVLVIFLFLGNWRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN-RKN 445
            LV   ++ ++++ T  +L  LG ++ + ++  +VL IGL VD  I+V E I        
Sbjct: 359 TLVPAITVPVSIVSTFTVLLALGFSINILTLLALVLAIGLVVDDAIVVLENIHRRMEEYG 418

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR---GFAITMGLSILISMFT 502
           ++   +   G  +    +  + I  +   V + F  G   R    FA+TM  +++ S F 
Sbjct: 419 ETRLVAAYRGTRQVGFAVVATTIVLVAVFVPIAFLRGDLGRLFAEFALTMAAAVVFSSFV 478

Query: 503 AISIVRAMMIFIIRYKKMKS---------IDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
           A+S+   +   ++                ID   L+        +     R     + + 
Sbjct: 479 ALSLSSMLASKVLPAAHRPEGGRAGLSEGIDRLFLAIRRRYRHLLGFLLRRPWIILLALV 538

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                               + +G   + V        S +++ +E ++   + +     
Sbjct: 539 ATLGAAVWLFERIPQEYTPKEDRGAFFILVNGPEGASHSYMKTYMEEIERRLMPYAESGE 598

Query: 614 EKNFLVRLQYQPGDSVA 630
               LVR      ++  
Sbjct: 599 AIRLLVRSPRAFSNTAT 615



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 87/228 (38%), Gaps = 8/228 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R   E       + +   G              + A    +E V + + + + LS   ++
Sbjct: 264 RGTEEERTFFRGNGKPMVGLGIIKQSTANTIAVAQAAKAEVERVNQSLPDGMILSQSFDS 323

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
            +   +   E+ +   + + +  + + +++     W   L    T+ + I  T       
Sbjct: 324 SVFVEEAIDEVYKTLAIAIGLVVLVIFLFLG---NWRATLVPAITVPVSIVSTFTVLLAL 380

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+  + A++  IG  V+D +VV + + + M+ Y    +      +   +     V 
Sbjct: 381 GFSINILTLLALVLAIGLVVDDAIVVLENIHRRMEEY--GETRLVAAYRGTRQVGFAVVA 438

Query: 775 TSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
           T++      +P+A   G +      FA+ MA  +V ++  ++ +++ +
Sbjct: 439 TTIVLVAVFVPIAFLRGDLGRLFAEFALTMAAAVVFSSFVALSLSSML 486



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +   ++  + + + +  +F+ W   L  + T+ L +   L    + G   N+ +   ++ 
Sbjct: 862  LFVFVLGLMVVYLVLAAQFESWIHPLVIMLTVPLAMAGALFGLWITGQSLNIFSQIGLVM 921

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L    + FR  + ++    L   + T +      +P+ +
Sbjct: 922  LVGLAAKNGILIVEFAN---QLRDQGLEFRAALVEASETRLRPILMTGVTTAAGAIPLLL 978

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
                G        I +  G++ A   ++F+  
Sbjct: 979  SSGAGSETRAVIGIVILAGVLAATVFTLFVVP 1010


>gi|150397841|ref|YP_001328308.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Sinorhizobium
           medicae WSM419]
 gi|150029356|gb|ABR61473.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium medicae WSM419]
          Length = 1058

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/570 (12%), Positives = 153/570 (26%), Gaps = 41/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  +G +        Q  + ++P   P               +V+    
Sbjct: 10  RPIFASVLSIVLLIVGSIA-----YFQLPIAQYPEIAPPT-------------IVVRASY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S          +T++F      +     V  
Sbjct: 52  PGADAETVANTVATPLEQEINGVENMLYMSSYATADGSMALTITFKLGTDLDQAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + TT      +++            +  S     +  D +   
Sbjct: 112 RVSIAEPRLPEEVRRIGVTTTKSSPDLMMVVHLLSPNDRYDQLYVSNYARSRIRDILVRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L        L    DP +L     T   +       N    G   G   +    
Sbjct: 172 DGVGDVLLFGEREYALRVWLDPQKLSAYGMTAGDVVEALRQQNVQVSGGSIGGPPMSSDS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY V                            I       R         I       
Sbjct: 232 AFQYTVTTDGRFGDARQFRY-------------VIVKATDEGRLVQLQDVARIELGAREY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +     +      A L           +          
Sbjct: 279 VTNSYLNGSPAVALGIFSRPGSNALAAADAIQATMADLSRDFPEGLEYRIIYNPTEFISE 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T A  A LV +V+ + +   +  ++   +I ++++ T ALL   G +L + ++
Sbjct: 339 SINEVYKTIAEAALLVALVVIIFLQSWRTAIIPIVAIPVSLVGTFALLFAFGFSLNMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     K  S   +  +      + +   ++      V  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNLAKGLSPREAAHVTMDEVGAAVIAISLVLTAVFVPT 458

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFF 532
            F  G + +    FA+T+ ++ +IS   ++++  A+   +                    
Sbjct: 459 AFIPGISGQFYLQFAVTIAVATVISAINSLTLSPALAAILLRPHENHGHESRNPLTRLGR 518

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSIC 562
              +     F R                I 
Sbjct: 519 GFANGFNRGFDRMADGYAWTVRHLVTTRIA 548



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/430 (12%), Positives = 131/430 (30%), Gaps = 20/430 (4%)

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             AG          ++ ++                S +    + +  +       +IA   
Sbjct: 621  FAGFNGATFTNASNSGVIFTPFNSFEE-RLERKQSSEQIIGQIFGAMQGIQEAFIIAVPP 679

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G G   GF + +       M  A+ +   MM    + + +  +     +       
Sbjct: 680  PSVRGIGNSGGFKMQIMDRQSADMRRALGLAHQMMGAANQTEGLTGVFTTFSASSPQFFL 739

Query: 537  CIAIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I     RA           +SI      +      G  Y +  +   Q  +     + L
Sbjct: 740  AIDRDKARALNVPIPNIFETLSINLGTSYVNDFNAFGRVYQVRAQADQQFRLEREDILAL 799

Query: 592  SVVRSNLESLQIGDISFQNFDGE----KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V  +    + +G +            + + + +      + A          K+  +  
Sbjct: 800  KVRSATGALVPLGTLVEIRDTSGPALVQRYNMYVSVPLQGNPAPGVSTGDALDKMEALAG 859

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAITTLILD 703
                Q T     +++ +  + G   V I +   + +++ +      W   L  I  + L 
Sbjct: 860  QILPQGTTFEWTELALQERQTGNTAVFIFALSVVFVFLALSAQYESWVLPLAIILIVPLA 919

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +   L   ++ G + N+     ++ LIG +  + +++ +  R   +      +  +    
Sbjct: 920  VLAALLGVSIRGFDNNVLTQIGLIVLIGLAAKNAILIVEFAR---QGEEEGKTPVEAAID 976

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + T+ A  + V+P+ +    G  +  S    +  G++      +F+     
Sbjct: 977  ASRLRLRPILMTAFAFILGVVPLVIATGPGAEMRQSLGTAVFSGMLGVTFLGLFLTPVFY 1036

Query: 821  LFIYDWRAKN 830
            + +   R K 
Sbjct: 1037 VALRSLRRKR 1046



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 86/241 (35%), Gaps = 7/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    +          L        +++A    ++     ++   P 
Sbjct: 263 VQLQDVARIELGAREYVTNSYLNGSPAVALGIFSRPGSNALAAADAIQATMADLSRDFPE 322

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                      +   E I +    +  +A+ + + + I    W  A+  I  + + +  T
Sbjct: 323 GLEYRIIYNPTEFISESINEVYKTIAEAALLVALVVIIFLQSWRTAIIPIVAIPVSLVGT 382

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N+  +  ++  IG  V+D +VV + + +N+      +S R+    +++E
Sbjct: 383 FALLFAFGFSLNMLTLFGLVLAIGIVVDDAIVVVENVERNLA---KGLSPREAAHVTMDE 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  S+      +P A   G        FA+ +A   V++A +S+ ++  +   + 
Sbjct: 440 VGAAVIAISLVLTAVFVPTAFIPGISGQFYLQFAVTIAVATVISAINSLTLSPALAAILL 499

Query: 825 D 825
            
Sbjct: 500 R 500


>gi|39936964|ref|NP_949240.1| RND multidrug efflux transporter MexD [Rhodopseudomonas palustris
           CGA009]
 gi|39650821|emb|CAE29344.1| RND multidrug efflux transporter MexD [Rhodopseudomonas palustris
           CGA009]
          Length = 1050

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/617 (13%), Positives = 168/617 (27%), Gaps = 50/617 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       P   + ++P+  P               + +  + 
Sbjct: 8   RPVFAWVVAIFIMIAGALAI-----PFLPVAQYPNIAPAK-------------ISVTANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
               +  + Q     +   L    G+  F        Q  I +SF            V  
Sbjct: 50  PGASSEEIYQGVVRLIEDQLAGIPGLMYFESTTDATGQISIEVSFQPGTSLAQATVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V S+L     +  ++        ++            +I     I R  I +I   
Sbjct: 110 RIRRVESRLPSAVTQRGILVDEASSTFLMFISVQTTDGSLDSIAVGDYITRNIISEIRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +               DP +L  +  T + +S      N        G      S 
Sbjct: 170 EGVGKAQLFGTQRSM-RVWIDPDKLFGVGLTVSDVSAAIAAQNAQVAAGRIGATPNPVSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K ++                 +    +                 +       
Sbjct: 229 EVTAPVLVKGQLG-------------TPEEFGAIVLRANRDGSSVRLRDVARVEVGGEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             A  +   T          L           +          
Sbjct: 276 NSESRLNGQPAASIGVQLSATANALATSRAVTAKMKELSQYFPKGMTYEIPYDTTPFIKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+F+ +   ++ L+    + + ++ T A++   G ++ + ++
Sbjct: 336 SIEKVLYTLAEAIALVFVVMFLFLQNIRYTLIPTLVVPIALLGTCAVMFATGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +      +    I    +      + 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERLMATEGLSPREATIKAMKQIKGAIVGITLVLTAVFLP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSID 524
           + FF    G   R F++TM +SIL S F A+++  A+    ++                +
Sbjct: 456 MAFFPGAVGIIYRQFSLTMVVSILFSSFLALTLTPALCATFLKPVPDDHHEKGGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                      + +     R     V    L +      L         + +G + + + 
Sbjct: 516 RTFARIAGRYRNGVGWATGRTGRLMVVYLALLAGLGWAYLRLPASFLPTEDQGYLIVDMQ 575

Query: 585 ANRPVDLSVVRSNLESL 601
           A      +   +++E  
Sbjct: 576 APTEATQTRAMTSIEQA 592



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 89/240 (37%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V       +  +   +        +        +++A +R +    K+++
Sbjct: 255 RDGSSVRLRDVARVEVGGEDYNSESRLNGQPAASIGVQLSATANALATSRAVTAKMKELS 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               +  I K +  +  +   + + +++  +   + L     + +
Sbjct: 315 QYFPKGMTYEIPYDTTPFIKASIEKVLYTLAEAIALVFVVMFLFLQNIRYTLIPTLVVPI 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  + A++  IG  V+D +VV + +     + T  +S R+   
Sbjct: 375 ALLGTCAVMFATGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERLMATEGLSPREATI 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++ +  G  V  ++      LPMA + G+V      F++ M   I+ ++  ++ +   +
Sbjct: 433 KAMKQIKGAIVGITLVLTAVFLPMAFFPGAVGIIYRQFSLTMVVSILFSSFLALTLTPAL 492



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  + L +   L    L  +  ++     ++ +IG S  + +++ +   +++
Sbjct: 887  SWSIPLSVMLVVPLGVIGALLAVMLRDMPNDIYFKVGLIAIIGLSAKNAILIVE-FAEDL 945

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
              +    S R+   ++        + TS+A  + V P+A   G       +    +  G+
Sbjct: 946  --HAEGKSLREAAIEAAAVRFRPIIMTSLAFILGVTPLAFASGVSAGSQNAIGTGVFGGM 1003

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +     ++       +F+     +  
Sbjct: 1004 LSPTVLAVLFVPVFYVFVLQKVEQRK 1029


>gi|325104157|ref|YP_004273811.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pedobacter saltans DSM 12145]
 gi|324973005|gb|ADY51989.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pedobacter saltans DSM 12145]
          Length = 1512

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/544 (13%), Positives = 154/544 (28%), Gaps = 33/544 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++   I  +G L           + +FP  +P + +                 
Sbjct: 7   KRPVLSLVISLFITLLGGLALF-----TLPVTQFPDIVPPSVV---------VTANYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQ 120
             +     + +  +   + +                 I + F      +  A  V   + 
Sbjct: 53  NAEVSTNAVAIPLERAINGVAGMTYMGSVSTNNGTTLIQVFFKVGTDPDIAAVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  K  + T  E    ++      D   +             + ++   E  
Sbjct: 113 TVLDELPEEVIKAGVTTEKEVNSMLMYLNVFSDDETADERFIYNFTDINILKELKRIEGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P RL     ++  +       N        G+   +  +  Q
Sbjct: 173 GFAQIMGLRDYAMRVWLKPDRLAAYQISSEDVITALRKQNVEAAPGQTGIGSDKSINMQQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y++    + +             K  +                     +I          
Sbjct: 233 YVLRYPGKFT-------------KESEYENIPIRANADGSIIRIKDIADIEFGSLDYEMV 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG-SLPIKLNIVEERNVGADLGSD 359
                      +       +    I+      A L+     P     +          S 
Sbjct: 280 SKTDGRPSASIMLKQLPGSNAQDVIKKVKERMAELKETSFPPGMKYTMGYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV IV+F+ +   +  L+   ++ + +I  L  + +LG ++ L ++  
Sbjct: 340 SSVVKTLIEAFLLVFIVVFIFLQDFRSTLIPALAVPVCLIGALFFMQMLGFSINLLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC----SLDMGFSRAYSTIFDSNITALIATV 475
           +VL IG+ VD+ I+V E +  +  +          +       A   I        +   
Sbjct: 400 LVLAIGIVVDNAIVVVEAVYAKMEEEHLSPMQATIAAMNEVGGAVVAITLVMSAVFVPVA 459

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            L    G   R F++T+  +I+IS   A+++  A+   I+R    K      L+RFF   
Sbjct: 460 FLSGPVGIFYRQFSLTLASAIVISGINALTLTPALCAIILRSPHDKPAAKGWLARFFGQF 519

Query: 536 DCIA 539
           +   
Sbjct: 520 NKAY 523



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 91/250 (36%), Gaps = 10/250 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + + AN    +  ++   +              +      +  +         V++ 
Sbjct: 247 YENIPIRANADGSIIRIKDIADIEFGSLDYEMVSKTDGRPSASIMLKQLPGSNAQDVIKK 306

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV----IISAIAMLIYIWIRF-KWYF 692
           VK+++ E+   S     +          +   I  V    I + + + I ++I    +  
Sbjct: 307 VKERMAELKETSFPPGMKYTMGYDVSRFLDASISSVVKTLIEAFLLVFIVVFIFLQDFRS 366

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +   L F  + G   NL  + A++  IG  V++ +VV + +    K+  
Sbjct: 367 TLIPALAVPVCLIGALFFMQMLGFSINLLTLFALVLAIGIVVDNAIVVVEAV--YAKMEE 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +S       ++NE  G  V  ++      +P+A   G V      F++ +A  IV++ 
Sbjct: 425 EHLSPMQATIAAMNEVGGAVVAITLVMSAVFVPVAFLSGPVGIFYRQFSLTLASAIVISG 484

Query: 810 SSSIFIAAPI 819
            +++ +   +
Sbjct: 485 INALTLTPAL 494



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 78/239 (32%), Gaps = 10/239 (4%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            +     L       +       +            +  A             E V  +  
Sbjct: 793  NEQGKMLPFSSFITMKRVYGPEQITRYNMFSSAMLNGDAADGYSSGEVIAAVEKVAQNLP 852

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAITTLILDITKT 707
            Q  +I    ++RE I  G   + I +   + +Y+ +      +   L  + +L   +   
Sbjct: 853  QGYDIEWTGMTREQIISGNQALYIFALCLLFVYLILAAQYESFLLPLPVLLSLPAGVFGA 912

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
              F  +FG+E N+ A  A++ LIG    + +++ +     +      +S+     +    
Sbjct: 913  FFFLKVFGLENNIYAQVALVMLIGLLGKNAILIVE---YAILKQKQGMSYLQAAIEGAVA 969

Query: 768  TLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             L   + TS A    ++P+    G   +   S  +    G+++     + +   + +  
Sbjct: 970  RLRPILMTSFAFVAGLIPLMFASGAGALGNRSIGVASVGGMLIGTIIGVLVIPGLYVLF 1028


>gi|167627739|ref|YP_001678239.1| preprotein translocase subunit SecD [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
 gi|167597740|gb|ABZ87738.1| preprotein translocase, subunit D, membrane protein [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 645

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 160/542 (29%), Positives = 278/542 (51%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D +  +N  L      + S
Sbjct: 107 YIIAMNMLSNSP--SWLSALGANPMNLGLDLRGGMYLMLEADTNTAINAQLDNSLSTILS 164

Query: 80  FLKKEGIGVFSMR--------------QIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
             K   I +                       ++++ A+S   + +   +    +     
Sbjct: 165 AAKDNNINIVGSTKAEEKSIVKAPQDYIDNGFVSVTLANSTGVDQLKQYLNNEFRKTQ-- 222

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ +  +  + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 223 -----DPNIIYSVKDNTVFISYNSAKILQLRQDAISQVVTVMRNRINALGVAEASVAQAG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP-NNSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G      
Sbjct: 278 DNRVVIEIPGMQDATQAKQILGGTSTASFYLVSPVTDRLAAEEQGYKVYALDNGRGYQSY 337

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +       G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 338 YSLRGAPVAGGADIIGASPSIDHQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 397

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 398 TTYEKVKDKDGKEKNVVNKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 457

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E  +G  LG D+I KG  +IV  L+ +++F++V Y  +G++A+ ++ +N++L 
Sbjct: 458 VPVHIVQETQIGPSLGKDNIEKGMLSIVVALIAVIVFILVYYRVFGVIANIALVMNLVLI 517

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 518 VAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 577

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 578 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKK 637

Query: 521 KS 522
             
Sbjct: 638 LE 639



 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 101/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I     +GP + ++ I KG++ +++
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQETQIGPSLGKDNIEKGMLSIVV 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVIVFILVYYRV-FGVIANIALVMNLVLIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 42.4 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 29/120 (24%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  ++  + L  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIVLALALFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            +   L  + I      +   ++ + + F D   +      +   L
Sbjct: 46  QKD--GNVSTQLVKSIEDTLDTDKIVYQKAELSDDKSNVAIIFKDVEEQLKAKKALKESL 103


>gi|50842643|ref|YP_055870.1| preprotein translocase subunit SecF [Propionibacterium acnes
           KPA171202]
 gi|289425418|ref|ZP_06427195.1| protein-export membrane protein SecF [Propionibacterium acnes
           SK187]
 gi|50840245|gb|AAT82912.1| translocase subunit SecF [Propionibacterium acnes KPA171202]
 gi|289154396|gb|EFD03084.1| protein-export membrane protein SecF [Propionibacterium acnes
           SK187]
 gi|313764317|gb|EFS35681.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL013PA1]
 gi|313772300|gb|EFS38266.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL074PA1]
 gi|313792003|gb|EFS40104.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL110PA1]
 gi|313802047|gb|EFS43281.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL110PA2]
 gi|313810165|gb|EFS47886.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL083PA1]
 gi|313812807|gb|EFS50521.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL025PA1]
 gi|313815855|gb|EFS53569.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL059PA1]
 gi|313830496|gb|EFS68210.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL007PA1]
 gi|313833532|gb|EFS71246.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL056PA1]
 gi|314915307|gb|EFS79138.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL005PA4]
 gi|314918142|gb|EFS81973.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL050PA1]
 gi|314920219|gb|EFS84050.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL050PA3]
 gi|314931742|gb|EFS95573.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL067PA1]
 gi|314955643|gb|EFT00045.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL027PA1]
 gi|314958039|gb|EFT02142.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL002PA1]
 gi|314962659|gb|EFT06759.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL082PA1]
 gi|314967475|gb|EFT11574.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL037PA1]
 gi|314973496|gb|EFT17592.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL053PA1]
 gi|314976176|gb|EFT20271.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL045PA1]
 gi|314983802|gb|EFT27894.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL005PA1]
 gi|315077875|gb|EFT49926.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL053PA2]
 gi|315080500|gb|EFT52476.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL078PA1]
 gi|315096043|gb|EFT68019.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL038PA1]
 gi|315098671|gb|EFT70647.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL059PA2]
 gi|315101326|gb|EFT73302.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL046PA1]
 gi|315105676|gb|EFT77652.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL030PA1]
 gi|327326323|gb|EGE68113.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL096PA2]
 gi|327445783|gb|EGE92437.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL043PA2]
 gi|327448234|gb|EGE94888.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL043PA1]
 gi|327450645|gb|EGE97299.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL087PA3]
 gi|327453278|gb|EGE99932.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL092PA1]
 gi|327454017|gb|EGF00672.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL083PA2]
 gi|328753275|gb|EGF66891.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL025PA2]
 gi|328754063|gb|EGF67679.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL087PA1]
 gi|328760715|gb|EGF74281.1| protein-export membrane protein SecF [Propionibacterium acnes
           HL099PA1]
          Length = 391

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 11/312 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L    I+  F++ R     I+ +  I S   L   GLN GI+FKGG+Q   
Sbjct: 25  KRKRSFTHALYTGEISYGFIQRRKVWYTITAVVIIISFIGLLVRGLNLGIEFKGGVQFRA 84

Query: 584 LANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            A+     +  VR ++ S    D+         +  V++Q +  ++   T+V E + K  
Sbjct: 85  PAHVATSTIDDVRKSVLSSGAPDMDATEVVSLGSDAVQVQTRALNNDETTKVQEAIAKA- 143

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                  +      VG +   ++  K I  +++  + +++ IW  F+ W  ++ A+  L+
Sbjct: 144 --TGTKMSSVTYSKVGSQWGEQITGKAIKALVVFLVLVMLQIWAYFRHWKMSIAALVALL 201

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDL 760
            D+  T+G +AL G   + + V  VLT++GYS+ D VVV+D++R+N++       +F + 
Sbjct: 202 HDLIVTIGIYALVGFTVSPSTVIGVLTILGYSLYDTVVVFDKVRENVQDIDKRDYTFAEG 261

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            ++++N+ L RS+ T++   + V  +      V G   +    + +  G++V A SSIFI
Sbjct: 262 ANRAVNQVLVRSINTTIVGVLPVAALLFAGAFVLGSGPLEDLGLALFVGMIVGAYSSIFI 321

Query: 816 AAPILLFIYDWR 827
           A P+   + +  
Sbjct: 322 ATPVFTQLREHE 333


>gi|56708193|ref|YP_170089.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110670664|ref|YP_667221.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224457296|ref|ZP_03665769.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254370680|ref|ZP_04986685.1| preprotein translocase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254875005|ref|ZP_05247715.1| preprotein translocase subunit secD [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|56604685|emb|CAG45748.1| preprotein translocase, subunit D, membrane protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320997|emb|CAL09131.1| preprotein translocase, subunit D, membrane protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568923|gb|EDN34577.1| preprotein translocase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254841004|gb|EET19440.1| preprotein translocase subunit secD [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|282159409|gb|ADA78800.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 645

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 280/542 (51%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D    ++  L      + S
Sbjct: 107 YIIAMNMLSNSP--NWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILS 164

Query: 80  FLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
             K   I + S  +                  ++++ A+S   + +   ++         
Sbjct: 165 AAKDNSINISSSTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLST-------D 217

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 218 FIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G      
Sbjct: 278 DNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNGRGYQSY 337

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 338 YSLKGTAIAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 397

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 398 TTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 457

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ +N+IL 
Sbjct: 458 VPVHIVQEQQIGPSLGKDNIGKGMLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILI 517

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 518 VAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 577

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 578 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKK 637

Query: 521 KS 522
             
Sbjct: 638 LE 639



 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  +I  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIILALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|114797729|ref|YP_758944.1| AcrB/AcrD/AcrF family protein [Hyphomonas neptunium ATCC 15444]
 gi|114737903|gb|ABI76028.1| AcrB/AcrD/AcrF family protein [Hyphomonas neptunium ATCC 15444]
          Length = 1042

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/661 (12%), Positives = 179/661 (27%), Gaps = 50/661 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   GL+        +  L  FP   P               +     
Sbjct: 9   KRPVFASVLSILLIVFGLVA-----FSRLPLREFPDIDPPVV---------SISVNYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + +          R   + I++ F  +R  +  A+ V   +  
Sbjct: 55  SASVVETRITQIIEERIAGIGGVRFINSRSRDGSSDISIEFNVNRDIDAAANDVRDRVSS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  +     +      +  I+       +      E +    R  +D+    +   
Sbjct: 115 VADRLPPEADAPEVEKADADDDVILWLNFASQE--MTTPELTDYANRFLVDRFSAIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D   +     T   +       N            +  +     
Sbjct: 173 RIQIGGSRDYAMRVWLDRRAMAARGLTAGDVERALRAENVEAPAGTLESGAVAYTLRIDR 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  + +G+ +                     E             + +         
Sbjct: 233 SFQDADDFAGLVIA--------------------EGEGYLVRLGDIARVERGTVDDRTMF 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       ++  +     + A  LAA L           +   +      S   
Sbjct: 273 RGNGEPMVGLGIVKQSTANTVDVAKGAKALAAELNTTLPEGMQLYLSFDSSVFIEASIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV +V+F+ +   +  ++   ++ ++VI T  +L  LG TL L ++  +V
Sbjct: 333 VWTTLAIAVVLVTLVIFLFLGSFRTTIIPAITVPVSVIATFIVLYALGFTLNLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E I    ++   S   +   G  +    +  + +  +   + +   
Sbjct: 393 LAIGLLVDDAIVVLENIHRRMQEEHESPLVAAFNGARQVGFAVIATTMVLMAVFIPITLM 452

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------IDINP 527
            G        FA+T+  ++  S F A+++   +   I++                ID   
Sbjct: 453 EGNTGRLFTEFAVTIAAAVAFSSFVALTLSPMLASKILKPHAESRSGPLSGFIQGIDKTV 512

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                           R     +    +                  + +GG  + +    
Sbjct: 513 DKVRGGYGHVFDFLVRRPLAIALATLAIMVGSWFIFQDLDSEYAPREDRGGFFMSIRGPE 572

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                 +   L+ ++   + +         L+R     G       V  +          
Sbjct: 573 GASFEYMERYLDEIERRLMPYTESGEISRLLIRAPGWGGGYNQGNVVAVLSDWDERRPAD 632

Query: 648 L 648
            
Sbjct: 633 D 633



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 81/235 (34%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +             F+        L  ++    ++V   +  + +  ++   +P 
Sbjct: 253 VRLGDIARVERGTVDDRTMFRGNGEPMVGLGIVKQSTANTVDVAKGAKALAAELNTTLPE 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                            IR+    + I+ + + + I++    +   +    T+ + +  T
Sbjct: 313 GMQLYLSFDSSVFIEASIREVWTTLAIAVVLVTLVIFLFLGSFRTTIIPAITVPVSVIAT 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   NL  + A++  IG  V+D +VV + +    ++     S          +
Sbjct: 373 FIVLYALGFTLNLLTLLALVLAIGLLVDDAIVVLENIH--RRMQEEHESPLVAAFNGARQ 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
                + T+M      +P+ +  G+       FA+ +A  +  ++  ++ ++  +
Sbjct: 431 VGFAVIATTMVLMAVFIPITLMEGNTGRLFTEFAVTIAAAVAFSSFVALTLSPML 485



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 57/157 (36%), Gaps = 7/157 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +I  + + + +  +F+ W   L  + ++   +   L    L G   N+     ++ LIG 
Sbjct: 863  VIGLLIVFLVLAAQFESWIHPLVIMLSVPATLAGGLLGLWLTGQTLNIYTQIGLIMLIGI 922

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L      F   + ++    L   + T +      LP+ +    
Sbjct: 923  AAKNGILIVEFAN---QLRDEGKDFDTALKEAALARLRPILMTGLTTAAGALPLIITSGA 979

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G     +    + FG + A + ++ +       +   
Sbjct: 980  GAETRIAIGAVILFGSLAAVTVALIVVPTAYTLLARR 1016


>gi|50085879|ref|YP_047389.1| putative multidrug efflux protein [Acinetobacter sp. ADP1]
 gi|49531855|emb|CAG69567.1| putative multidrug efflux protein [Acinetobacter sp. ADP1]
          Length = 1042

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/691 (12%), Positives = 195/691 (28%), Gaps = 48/691 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++  +G+   L        ++R+P   P               +V+    
Sbjct: 19  RPIFAIVLAIIVMALGIFSLL-----NLPVERYPDIAPP-------------RIVVSTSY 60

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   +K           S     ++I+L F      +    +V  
Sbjct: 61  SGADAQAVEDSVTQVLEQQIKGIDHLLYFSSSSDANGSSQISLYFQQGTNPDQAQVQVQN 120

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + G  ++L  D ++  ++       S ++         S  I+ S  +       +   
Sbjct: 121 AINGALNRLPDDVQRQGVIVRKSLSDSFLVVGLADRSGKSTNIDISDYLSNNFELNLSRI 180

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP +L+      + +       N        G        
Sbjct: 181 EGVGEINVFGSP-YAMRIWLDPVKLQHYQLMVSDIRSALENQNTQVAAGAIGALPAPKDQ 239

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     +                 +    I          +      +       
Sbjct: 240 YLNAKVTSGSLL-------------KTPEQFENIIVKANANGSFVYLKDVARVEIGAQNY 286

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +     +    S  A  +   T +      + L          I    +      
Sbjct: 287 QVFNRINGYPGSGLSVSLAAGANLVKTADLVYQEISRLEKNLPEGYFIIYPRDDTLFVKE 346

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + ++ T A+LS+LG ++   ++
Sbjct: 347 SIKQVISTLLEAIILVVLVMFIFLQNWRATLIPTITVPVVILGTFAVLSILGMSINTLTL 406

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     + Q     +  +        +    +      + 
Sbjct: 407 FAMVLAIGLLVDDAIVVVENVERLMHEQQLDARQASILSMQEISGALVGITLVLTAVFIP 466

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF    G   R F+IT+  ++++S+  A+ +  A+   +    + KS          L
Sbjct: 467 MSFFSGATGIIYRQFSITLVAAMVLSLMVALILTPALCAIL-LKPQNKSFKWADGFNRKL 525

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY------GIDFKGGIQLGVLANR 587
                    +  R        L     +   F              + +G + +      
Sbjct: 526 DQLRDYYLRLTHRSVQFKTISLIIFVVLIAAFIWIYRSLPTSFLPQEDQGALSVQFTLPE 585

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              LS      + +    +S +  +     ++  +   G      +    +K        
Sbjct: 586 GTPLSKTEDVGKQISDYFMSHEKTNLNGIMVIHGRNNSGTGQNLGQAYVSLKHWDERTGA 645

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            ++ Q       +   +  +  I  ++ S I
Sbjct: 646 ANSAQQIRTRAMQYFAQNNQARIFVLMPSVI 676



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 86/203 (42%), Gaps = 8/203 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           + +  ++K + E   +   ++  +   +  +++I   +  +I+  + M I++     W  
Sbjct: 319 QEISRLEKNLPEGYFIIYPRDDTLFVKESIKQVISTLLEAIILVVLVMFIFLQ---NWRA 375

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L    T+ + I  T    ++ G+  N   + A++  IG  V+D +VV + +     ++ 
Sbjct: 376 TLIPTITVPVVILGTFAVLSILGMSINTLTLFAMVLAIGLLVDDAIVVVENV--ERLMHE 433

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +  R     S+ E  G  V  ++      +PM+ + G+       F+I +   +V++ 
Sbjct: 434 QQLDARQASILSMQEISGALVGITLVLTAVFIPMSFFSGATGIIYRQFSITLVAAMVLSL 493

Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832
             ++ +   +   +   + K+ +
Sbjct: 494 MVALILTPALCAILLKPQNKSFK 516



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 70/209 (33%), Gaps = 14/209 (6%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             +    + L  +   + +     +  + +            + I   +IS   + + +  
Sbjct: 840  STGQAMQKLSNLVDAMPDAGLAWSGMSFQERESSH------QAIWLYVISIAFIFLCLAA 893

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             ++ W      +  + L I  T+ F   F    ++    A+LT IG S  + +++ +   
Sbjct: 894  LYESWSIPTVVMAAIPLGIGGTILFSEWFNFANDIYFQIALLTTIGLSCKNAILMVE--- 950

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
                L     +      K+    L   + TS+A    V+P+    G+      +    + 
Sbjct: 951  YAANLQENGETVLHAALKAAGLRLRPILMTSIAFGAGVVPLMFSSGAGALSRQAIGYSVF 1010

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G++      + I  P +  +     K+ 
Sbjct: 1011 GGVLFGTIL-VLIFIPFMYVLIRSVFKHK 1038


>gi|3868984|dbj|BAA34300.1| MexY [Pseudomonas aeruginosa]
          Length = 1046

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/684 (11%), Positives = 188/684 (27%), Gaps = 43/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPVFAWVISLLIVLAGVLAI-----RFLPVAQYPDIAPPVV---------NVSATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +    Q  +TL+F         A +V   L+ V
Sbjct: 54  AKVVEEAVTAIIEREMNGAPGLLYTKATSSTGQASLTLTFRQGVNANLAAVEVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +++ +      +   ++           A+E         +  +   E   +
Sbjct: 114 ESRLPESVRRDGIYVEKAADSIQLIVTLTSSSGRYDAMELGEIASSNVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP++L  +  + + +       N        G   + DS      
Sbjct: 174 VETWGA-EYAMRIWPDPAKLTSMNLSASDLVNAVRRHNARLTVGDIGNLGVPDSAPISAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+    +                 +                      +    +       
Sbjct: 233 VKVDDTL-------------VTPEQFGEIPLAHPRDGGAIRLRDVARVEFGQSEYGFVSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L           +          S    
Sbjct: 280 VNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSYNIPYDTSAFVEISIRKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+++ +   +  L+    + + ++ T  ++  LG ++ + ++ G+VL
Sbjct: 340 VSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  S   +      +    I    +  +   V + FF 
Sbjct: 400 AIGILVDDAIIVVENVERLMAEEGLSPHDATVKAMRQISGAIVGITVVLVSVFVPMAFFS 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+T+ +SI  S F A+S+  A+   +          +       +   L 
Sbjct: 460 GAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLRPIDADHHEKRGFFGWFNRAFLR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                 + +A    R   W +  +++  + ++  +         + +G   + V+     
Sbjct: 520 LTGRYRNAVAGILARPIRWMLVYTLVIGVVALLFVRLPQAFLPEEDQGDFMIMVMQPEGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            ++   +N+  ++      +       + V      GD  +   +   +K          
Sbjct: 580 PMAETMANVGDVERYLAEHEPVA--YAYAVGGFSLYGDGTSSAMIFATLKDWSERREASQ 637

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            +        +    L  + +  +
Sbjct: 638 HVGAIVERINQRFAGLPNRTVYAM 661



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 82/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +        L        ++VA  + +     +++   P     
Sbjct: 263 DVARVEFGQSEYGFVSRVNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSY 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N            IRK +  ++ + + +   +++  + +   L     + + +  T    
Sbjct: 323 NIPYDTSAFVEISIRKVVSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVM 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  +  ++  IG  V+D ++V + +     +    +S  D   K++ +  G 
Sbjct: 383 LGLGFSINVLTMFGMVLAIGILVDDAIIVVENV--ERLMAEEGLSPHDATVKAMRQISGA 440

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  ++      +PMA + G+V      FA+ +A  I  +A  ++ +   +   +  
Sbjct: 441 IVGITVVLVSVFVPMAFFSGAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLR 497



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/166 (18%), Positives = 64/166 (38%), Gaps = 7/166 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             +  + +  I  L    +   W   L  I  + L +   L   +L G+  ++     ++T
Sbjct: 870  ALFALSV-LIVFLALAALYESWSIPLAVILVVPLGVLGALLGVSLRGLPNDIYFKVGLIT 928

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +IG S  + +++ +  +     Y   +S      ++    L   V TS+A    V+P+A+
Sbjct: 929  IIGLSAKNAILIIEVAKD---HYQEGMSLLQATLEAARLRLRPIVMTSLAFGFGVVPLAL 985

Query: 789  WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G+ I    +    +  GIV A   ++F+     L +        
Sbjct: 986  SSGAGIRAQVAIGTGVLGGIVTATVLAVFLVPLFFLVVGRLFRLRK 1031


>gi|316932820|ref|YP_004107802.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Rhodopseudomonas palustris DX-1]
 gi|315600534|gb|ADU43069.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris DX-1]
          Length = 1050

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 81/617 (13%), Positives = 169/617 (27%), Gaps = 50/617 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       P   + ++P+  P               + +  + 
Sbjct: 8   RPVFAWVVAIFIMIAGALAI-----PFLPVAQYPNIAPAK-------------ISVTANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
               +  + Q     +   L    G+  F        Q  I +SF            V  
Sbjct: 50  PGASSEEIYQGVVRLIEDQLAGIPGLMYFESTTDATGQISIEVSFQPGTSLAQATVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V S+L     +  ++        ++            +I     I R  I +I   
Sbjct: 110 RIRRVESRLPSAVTQRGILVDEASSTFLMFISVQTTDGSLDSIAVGDYITRNIISEIRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +               DP +L  +  T + +S      N        G      S 
Sbjct: 170 EGVGKAQLFGTQRSM-RVWIDPDKLFGVGLTVSDVSAAIAAQNAQVAAGRIGATPNPVSQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K ++                 +    +                 +       
Sbjct: 229 EVTAPVLVKGQLG-------------TPEEFGGIVLRANRDGSSVRLRDVARVEVGGEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             A  +   T          L           +          
Sbjct: 276 NSESRLNGQPAASIGVQLSATANALATSRAVTAKMKELAQYFPKGMTYEIPYDTTPFIKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+F+ +   ++ L+    + + ++ T A++   G ++ + ++
Sbjct: 336 SIEKVLYTLAEAVALVFVVMFLFLQNIRYTLIPTLVVPIALLGTCAVMFATGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +      +    I    +      + 
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERLMATEGLSPRQATIKAMRQIKGAIVGITLVLTAVFLP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSID 524
           + FF    G   R F++TM +SIL S F A+++  A+    ++                +
Sbjct: 456 MAFFPGAVGIIYRQFSLTMVVSILFSSFLALTLTPALCATFLKPVPDDHHEKAGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +         + +     R     V    L +      L         + +G + + + 
Sbjct: 516 RSFARIAGRYRNGVRWATGRTGRLMVVYLALLAGLGWAYLRLPAAFLPTEDQGYLIVDMQ 575

Query: 585 ANRPVDLSVVRSNLESL 601
           A      +   +++E  
Sbjct: 576 APTEATQTRAMTSIEQA 592



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 87/240 (36%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V       +  +   +        +        +++A +R +    K++ 
Sbjct: 255 RDGSSVRLRDVARVEVGGEDYNSESRLNGQPAASIGVQLSATANALATSRAVTAKMKELA 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               +  I K +  +  +   + + +++  +   + L     + +
Sbjct: 315 QYFPKGMTYEIPYDTTPFIKASIEKVLYTLAEAVALVFVVMFLFLQNIRYTLIPTLVVPI 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  + A++  IG  V+D +VV + +     + T  +S R    
Sbjct: 375 ALLGTCAVMFATGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERLMATEGLSPRQATI 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++ +  G  V  ++      LPMA + G+V      F++ M   I+ ++  ++ +   +
Sbjct: 433 KAMRQIKGAIVGITLVLTAVFLPMAFFPGAVGIIYRQFSLTMVVSILFSSFLALTLTPAL 492



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  + L I   L    L  +  ++     ++ +IG S  + +++ +  +   
Sbjct: 887  SWSIPLSVMLVVPLGIIGALLAVMLRDMPNDIYFKVGLIAIIGLSAKNAILIVEFAKD-- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
             L+      R+   ++        + TS+A  + V P+A   G       +    +  G+
Sbjct: 945  -LHADGKPLREAAIEAAGIRFRPIIMTSLAFILGVTPLAFASGVSAGSQNAIGTGVFGGM 1003

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            + A   ++       +F+     +  
Sbjct: 1004 LSATVLAVLFVPVFYVFVLQKVERRK 1029


>gi|304394795|ref|ZP_07376693.1| hydrophobe/amphiphile efflux-1 [Ahrensia sp. R2A130]
 gi|303293094|gb|EFL87496.1| hydrophobe/amphiphile efflux-1 [Ahrensia sp. R2A130]
          Length = 1077

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/529 (12%), Positives = 152/529 (28%), Gaps = 39/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  IG +        Q  + ++P   P               + +    
Sbjct: 9   RPIFATVLSIVIVLIGAIS-----YIQLPVAQYPEIAPPT-------------VSVTATY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +   EG+     +   +    IT++F      +     V  
Sbjct: 51  PGASAEVVADTVSSPIEQQINGVEGMLYMLSQSTGDGRVTITVTFQLGTDLDEAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    +   + T       +++            +  S     Q  D++   
Sbjct: 111 RVSLAEPRLPEIVRALGVTTRQNSPDLMMVVHLVSPDDSRDRLYISNYASTQITDRLTRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP+R+     T  ++       N            +    
Sbjct: 171 GGVGQVTIFGERAYSMRVWLDPNRMSARNLTAGEVVAALRANNLQVAAGTINQSPVPVVG 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  VE +  ++                     I        +        +       
Sbjct: 231 AFRLNVETQGRLA-------------TPEDFANIIVRTGDNGEQVRVSDIGRVELGAQNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T +    L   L     P   + +          
Sbjct: 278 SGNGFLDGRTAIPIGIFQRPGSNALETSQQVIDLMEQLSTSFPPGLEHRIVYNPTEFIEE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   +I +++I T  ++S  G ++   ++
Sbjct: 338 SVDAVITTILEAVLLVIVVIIVFLQSWRAAIIPIIAIPISLIGTFFVMSSFGFSINNLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL +G+ VD  I+V E +  +  +  S + +           +  ++   L   V  
Sbjct: 398 FGLVLAVGIVVDDAIVVVENVERKINEGMSPYEAAKDSMKEVSGALIATSFVLLAVFVPT 457

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            F     G   R FA+T+  + +IS   ++++  AM    ++ K+ K  
Sbjct: 458 AFITGITGQFFRQFAVTIATATVISSIVSLTLSPAMASLFLQSKEEKER 506



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/227 (11%), Positives = 75/227 (33%), Gaps = 12/227 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V L  + +  +      +   N           Q       A T + E++ + + 
Sbjct: 808  KTGNMVPLGSIVTITDKTGAYRVPRYNLFAAGAIQGATQPGFSTGEAITAMEEVLDENLP 867

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                               +      I   I + + + + +  +++ W   +  +  + +
Sbjct: 868  LGFSY-----EWTELALQEKLSGNTAIYAFIAAVVFVFLVLAAQYESWMLPMAVVLIVPM 922

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +      G++ N+     ++ L+G +  + +++ +  +   +        R+   
Sbjct: 923  CLLSAIVGVIWTGLDVNILVQIGLVVLVGLASKNAILIVEFAK---QAEDEGRPIREAAR 979

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
            ++    L   V TS A  + V+P+ +    G  +  S    + +G++
Sbjct: 980  EAARLRLRPIVMTSFAFILGVVPLMIATGPGAEMRQSLGTSVFYGML 1026



 Score = 40.8 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 9/135 (6%)

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           ++         + FG   N   +  ++  +G  V+D +VV + +    +     +S  + 
Sbjct: 378 LIGTFFV---MSSFGFSINNLTLFGLVLAVGIVVDDAIVVVENV---ERKINEGMSPYEA 431

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
              S+ E  G  + TS       +P A      G     FA+ +A   V+++  S+ ++ 
Sbjct: 432 AKDSMKEVSGALIATSFVLLAVFVPTAFITGITGQFFRQFAVTIATATVISSIVSLTLSP 491

Query: 818 PILLFIYDWRAKNAR 832
            +       + +  R
Sbjct: 492 AMASLFLQSKEEKER 506


>gi|170751171|ref|YP_001757431.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657693|gb|ACB26748.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 1062

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/588 (11%), Positives = 160/588 (27%), Gaps = 37/588 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  ++  IG +  L        + ++P+ +P               + +    
Sbjct: 9   RPVLANVLALVMVLIGAVSLL-----NLPVSQYPNVVPPT-------------VQVTTRY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +   EG+         +    +T++FA     +     V  
Sbjct: 51  PGASARTVVDTVALPIEQQVNGVEGMLYMQSTSASDGTYTLTVTFAIGTDGDQAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L    +   + T  +    +     +       ++  S   +    +++   
Sbjct: 111 RVAIAMSSLPQAVQVQGVTTQKKSTAVLQFVTLSASDGKFDSLFLSNYGVINVQNELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP  ++    T   +       +        G+  +    
Sbjct: 171 PGVGNVTVFGAGQYAMRIWLDPDLVQARGLTPDAIINIVQQQSQEVTAGAVGMPPVPAGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +     ++                + +V  +  + G R         +       
Sbjct: 231 DFQYTLNVNGRLNNA-----------PDFENIVIKADAQDGGRITRLRDVGRVELGAQTY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +            A L        +  +          
Sbjct: 280 SQSFTLNGQPAAGIGIYQLPEANALTVANAVRARMAELAKTFPSGLVYAIPFDTTEFVQA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T    A LVLIV+ + V   +  LV   ++ + +I   A ++ +G ++ L ++
Sbjct: 340 SIHEVYRTLFEAAVLVLIVILVFVQDWRAMLVPATTVPVTIIGAFAAMAAMGFSVNLSTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIAT 474
             IVL IG+ VD  I++ E +     +  S   + +      +  I       ++  +  
Sbjct: 400 FAIVLAIGIVVDDAIVIVEGVSHHIDEGLSPRAAAEQAMEELFGPIIGITLVLMSVFVPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   + FA+ +  + LIS   A ++        +R              F  +
Sbjct: 460 AFLPGLTGQLYKQFALVIAATALISAINAATLKPTQCALWLRKPVPPEKRNVFYRGFNRV 519

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +   + R     V  S L    ++ L+   G          +   
Sbjct: 520 YGVLENGYARLIASMVRRSGLMVAAALLLIGLAGWGLTRLPTAFLPTE 567



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 75/225 (33%), Gaps = 15/225 (6%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                +V        S     +++ +  K+                  +  ++       +
Sbjct: 825  PTATIVGGAAPGFSSGQALDLMQQIAAKVLPPGTGYDWTAMSYQEKAVGAQIY------L 878

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +     +L+Y+ +      W   L  +  + L +  T+G   L G+  NL     ++ LI
Sbjct: 879  VFGLAILLVYLVLAGQYESWILPLAVLLGVPLALLGTVGALLLLGVANNLYTQIGLILLI 938

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
              +  + +++ +  R+      + +       ++        + TS A  + VLP+    
Sbjct: 939  ALASKNAILIVEVARE---KRQSGLDIAAAAVEAARLRFRPILMTSFAFILGVLPLVTAS 995

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G +   S  I +  G++ +   ++       + +     + AR
Sbjct: 996  GAGAAARKSIGITVFSGMLASTCLAVLFVPSFYVILQRLEERRAR 1040



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 81/229 (35%), Gaps = 9/229 (3%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           + Q   G   + +        + A    +  + K     +  +   +T         E+ 
Sbjct: 286 NGQPAAGIGIYQLPEANALTVANAVRARMAELAKTFPSGLVYAIPFDTTEFVQASIHEVY 345

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           R      ++  I +L+++     W   L   TT+ + I       A  G   NL+ + A+
Sbjct: 346 RTLFEAAVLVLIVILVFVQ---DWRAMLVPATTVPVTIIGAFAAMAAMGFSVNLSTLFAI 402

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  IG  V+D +V+ + +          +S R   ++++ E  G  +  ++      +P 
Sbjct: 403 VLAIGIVVDDAIVIVEGV---SHHIDEGLSPRAAAEQAMEELFGPIIGITLVLMSVFVPA 459

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           A      G +   FA+ +A   +++A ++  +                +
Sbjct: 460 AFLPGLTGQLYKQFALVIAATALISAINAATLKPTQCALWLRKPVPPEK 508


>gi|330939235|gb|EGH42638.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 818

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 159/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFSGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 SEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGADGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVAATHKTMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLSGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDRMLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQD 577



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVAATHKTMAEVTGPIIATAL-VLCAVFVPAAFISGLSGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|167590051|ref|ZP_02382439.1| Hydrophobe/amphiphile efflux pump [Burkholderia ubonensis Bu]
          Length = 1047

 Score =  179 bits (453), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/590 (11%), Positives = 155/590 (26%), Gaps = 41/590 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I  +G++       PQ  + R+P+  P               + +   
Sbjct: 7   RRPVFAWVVALFIILMGVIAI-----PQLPIARYPTVAPPT-------------VTINAT 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      KIT++F            V 
Sbjct: 49  YPGATPQTMSDGVLSLIERELSGVKNLLYYESSADTSGTAKITVTFKPGTDPALAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V  +L    ++N ++  +     ++      D       E S  + R  ++++  
Sbjct: 109 NKLKAVEPRLPAVVRQNGVIVESASSGFLLFVALKSDSGRFDEGELSDYMARNIVEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DPSRL     + + ++      N        G       
Sbjct: 169 VEGVGRVQMFGS-ERAMRIWVDPSRLITYGLSMSDLTAAISQQNVQIAPGSVGALPAMSG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +        +        +      
Sbjct: 228 QRVTVPLTVQGQLT-------------TPEQFAAIVLRANANGSKVVLGDVARVELGSQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                  +      A        +   T +      A LR        + +         
Sbjct: 275 YNFVNTESGKPAVIAGVQLSPGGNAVKTADAVRARLAELRKSMPSGMSDSIPFDTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++   G ++ + +
Sbjct: 335 ISIEKVLDTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAMLGTFTIMLASGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMAEEGLSPKDATVKAMKEITGAIIGVTLVLTAVFL 454

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            +    G     +        +  +F+A+  +            M     +         
Sbjct: 455 PMAMSSGSVGVIYQQFTMSMAVSILFSALLALTLTPALCAT---MLKPIAHGHHEKRGFF 511

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                +F R   W           +  ++       G+   G  +L    
Sbjct: 512 GWFNRRFDRMTQWYATRVGRLIGRAGRVMLLFVAICGVLAVGFRELPSSF 561



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 82/230 (35%), Gaps = 14/230 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q  +                    G++V     +     ++ + +
Sbjct: 258 SKVVLGDVARVELGSQSYNFVNTESGKPAVIAGVQLSPGGNAVKTADAVRARLAELRKSM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I K +  +I + + + + +++     R+    A+ A   ++
Sbjct: 318 PSGMSDSIPFDTAPFVKISIEKVLDTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAML 377

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              T  L      G   N+  +  ++  IG  V+D +VV + +     +    +S +D  
Sbjct: 378 GTFTIMLA----SGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAEEGLSPKDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
            K++ E  G  +  ++      LPMA+  GSV      F + MA  I+ +
Sbjct: 432 VKAMKEITGAIIGVTLVLTAVFLPMAMSSGSVGVIYQQFTMSMAVSILFS 481



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 62/149 (41%), Gaps = 7/149 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              + + +S I + + +   ++ W   L  +  + L +   +G   L G+  ++     ++
Sbjct: 866  APMLMALSMIVVFLVLAALYESWSIPLSVMLVVPLGLIGAIGAVMLRGLPNDVYFKVGMI 925

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            T+IG S  + +++ +  +   +L        +   ++    L   + TS+A  + V+P+ 
Sbjct: 926  TVIGLSAKNAILIVEFAK---QLREEGKGLLEAAVEASRLRLRPILMTSLAFGLGVVPLM 982

Query: 788  VWGG---SVIGSFAIPMAFGIVVAASSSI 813
            +  G       +    +  G+V A   +I
Sbjct: 983  IATGASAETQHAIGTGVFGGMVTATVLAI 1011


>gi|254500367|ref|ZP_05112518.1| RND transporter, HAE1 family [Labrenzia alexandrii DFL-11]
 gi|222436438|gb|EEE43117.1| RND transporter, HAE1 family [Labrenzia alexandrii DFL-11]
          Length = 1047

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/626 (10%), Positives = 163/626 (26%), Gaps = 45/626 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +   +G L           + +FP+  P               + +    
Sbjct: 9   RPNFAIVIAVLTVLVGALAI-----RFVPIAQFPNIAPP-------------QIQVTASF 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S  +   ++T++F      +  A  V  
Sbjct: 51  PGANAALIQNAVATPIEEQVNGVDGMIYMSSQSSSEGTYQLTVTFEIGTDPDIAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L     K  + T+ +    + +            +  S        D +   
Sbjct: 111 RVALATPLLPEAVTKLGISTSKQNSDMLQVINLLSPNKTFSQLYLSNYAADFIQDPLSRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +          +   +    DP ++  L  + + +S      N        G     D+ 
Sbjct: 171 DGVGLVNQFGPLNYSMRVWLDPEKMAALNLSASDVSSAIEAQNVEAAAGQIGAPPFSDAQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                       +                +    I   +             +       
Sbjct: 231 ------------TSFQFTLDAQGLLETAEQFEQIILGAQDDGSFIRLKDIARVELGAESY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             ++  +     +        L          ++      A   
Sbjct: 279 AATSFYNGEPSAIIAIFEESGANALDVADAVRSQMEELSKQFPEDMEYVLAYDVTTAVRK 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T AI A LV+ V F  +L  +  L+   +I ++++ T+AL+ ++G +  + ++
Sbjct: 339 SIEEIASTLAITAALVISVTFFFLLSIRATLIPAIAIPVSLLGTMALIYVIGFSANMITL 398

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             IVL I L VD  I++ E               +     S+    I  +        V 
Sbjct: 399 FAIVLAITLVVDDAIVIIENTERIMEEDGFEPREATLKAMSQVTRPIIATTFVLAAVFVP 458

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-MKSIDINPLSRFF 532
           + FF    G     FA+T+  +  +S   A+++   +    +  +          +    
Sbjct: 459 VCFFPGITGEIYLQFALTITFAFALSAINALTLGPVLCSLFLSRRTGHPKGLFRLIPMLI 518

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-----KGGIQLGVLANR 587
                  +  +R     + +S+      I             F      G + + +    
Sbjct: 519 DKLRDGYVAVVRLMLRFIPVSLAVFAGVIAATIYMFETTPTGFIPPEDNGVLFVSIELPD 578

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDG 613
              L   +  ++++            
Sbjct: 579 GASLQRTQEVVQNISAEVQKHPGIGA 604



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 83/247 (33%), Gaps = 11/247 (4%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R  L +      SF N +      +  +           V   +++   +       
Sbjct: 267 DIARVELGAESYAATSFYNGEPSAIIAIFEESGANALDVADAVRSQMEELSKQFPEDMEY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                V   + + +        I +A+ + +  +        L     + + +  T+   
Sbjct: 327 VLAYDVTTAVRKSIEEIASTLAITAALVISVTFFFLLSIRATLIPAIAIPVSLLGTMALI 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTTSISFRDLIDKSINET 768
            + G   N+  + A++  I   V+D +V+    +R+ +           R+   K++++ 
Sbjct: 387 YVIGFSANMITLFAIVLAITLVVDDAIVIIENTERIMEE-----DGFEPREATLKAMSQV 441

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               + T+       +P+  +    G +   FA+ + F   ++A +++ +   +      
Sbjct: 442 TRPIIATTFVLAAVFVPVCFFPGITGEIYLQFALTITFAFALSAINALTLGPVLCSLFLS 501

Query: 826 WRAKNAR 832
            R  + +
Sbjct: 502 RRTGHPK 508



 Score = 42.4 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 63/173 (36%), Gaps = 16/173 (9%)

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT----AVA 724
            G+V  I+    +  Y+ +  ++   +  ++ +   +    G         NL     A  
Sbjct: 868  GLVTYILILAVIFAYLCLVAQYESWVLPLSVMASTVFAVFGALIPLQFIPNLNNNIYAQI 927

Query: 725  AVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
             ++ LIG +    ++V +    +R+         S ++   ++ +        T +   +
Sbjct: 928  GMVLLIGLAAKKAIMVVEFAKNLREE------GHSIQEAAIEAAHMRFRPVTMTGLCFIL 981

Query: 782  SVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             VLP+ +    G +   S   P+  G+++ ++  + +   +         + A
Sbjct: 982  GVLPLVLASGAGAAGRVSIGFPVFVGMIIDSTLGLLMIPVLYAVFQLISERIA 1034


>gi|332139589|ref|YP_004425327.1| acriflavine resistance protein B [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549611|gb|AEA96329.1| acriflavine resistance protein B [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 1033

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 172/689 (24%), Gaps = 50/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G+L           ++++P   P               + +    
Sbjct: 8   RPVFAWVLAIITMMAGVLAI-----TSLPIEQYPKVAPP-------------SVTISASY 49

Query: 63  DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  ++       ++  + +        S       ITL+F      +    +    
Sbjct: 50  PGASAETVENSVTQVIEQSLTGIDNLRYFSASSSNSSLSITLTFEPGTDPDIAQVQTQNK 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +QG    L    ++  +  T       +      +       + S  ++    D I    
Sbjct: 110 VQGALPLLPTQVQQQGVTVTKANSAFALAVGFYSEDDSMTQYDLSDMLVSSFQDPISRVN 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                              DP +L     T   +     + N        G     ++  
Sbjct: 170 GVGNVRVFGAQRSM-RIWLDPDKLYSYNLTPTDVQAAVQVQNTDVSAGQLGGLPAIENQQ 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               ++ +  +                      +        +        +        
Sbjct: 229 INATIQAQSRL-------------QTVEDFENIVLRVNTDGSQVRVRDVARVELGAQSYD 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                     +    S  +  +   TI+        LR+        +    +      S
Sbjct: 276 VIVRYDRRPASGMAISLASGANALDTIKAVKARVEELRSNLPDSVKVVYPVDSSPFIELS 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  L+   ++ + ++ T A+L   G ++ + ++ 
Sbjct: 336 IESVVHTLIEAVVLVFLVMLLFLQNWRATLIPTIAVPVVLLGTFAVLLAFGFSINVLTMF 395

Query: 419 GIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIAT 474
            +VL IGL VD  I+V E +      +  S   +     S+       I     T  I  
Sbjct: 396 AMVLAIGLLVDDAIVVVENVERIMEEEGLSPAEATKKSMSQITGALVGIAAVLSTVFIPM 455

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDI 525
                  G   R F++T+  ++  S+  AI +  ++   +                  + 
Sbjct: 456 AFFSGSAGAIYRQFSVTIVSAMAFSVLVAIVLSPSLCATLLKQHSEDHDKNKGFFGWFNR 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             R + + V   +L    +       G     + +G + + V  
Sbjct: 516 TFNKGRDRYQRTTTHMAKRFKRYFVVYGLLVGGMAFIFSQLPGAFLPDEDQGRMMVLVST 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                      +++ +    I  Q  D        + +          +  +     +  
Sbjct: 576 PPGATAGRTLESIKQV-EDYILEQESDAVNGMFAVVGFSFAGQAQNAGMAFLNFNDWSVR 634

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               +             ++       ++
Sbjct: 635 DESDSAFAVTQRAFGAFSQIQDASAFPIV 663



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 80/268 (29%), Gaps = 11/268 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +       V  S   +         +   N     N           
Sbjct: 773  PHRMTPEDLDKWFVRNSDGEMVAFSTFSTTEWVYGSPKLERFNGISSVNIQGSAAPGVSS 832

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V +         +  + E         +    +  + I  I  L    + 
Sbjct: 833  GEAMAEMQKLVGQLPPGFAVEWSGLSYEEQEAGSQAPM----LYALSI-LIVFLCLAALY 887

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L I  ++    +F +  ++    A LT +G +  + +++ +  ++ 
Sbjct: 888  ESWSVPFAVMLVVPLGILGSVTAAFIFNLPNDVYLQVAFLTTVGLAAKNAILIVEFAKE- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFG 804
               Y         +  + ++     + TSMA  + V P+A+  G+   S     I +  G
Sbjct: 947  --QYENGEDLMTAVSNAASQRFRPILMTSMAFILGVTPLALASGAGAASQNAIGIAVMGG 1004

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +  A   +IF      + +     K  +
Sbjct: 1005 MFAATFLAIFFVPMFYVMVEKLFHKEDK 1032



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 57/142 (40%), Gaps = 11/142 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRK 746
           W   L     + + +  T      FG   N+  + A++  IG  V+D +VV    +R+ +
Sbjct: 361 WRATLIPTIAVPVVLLGTFAVLLAFGFSINVLTMFAMVLAIGLLVDDAIVVVENVERIME 420

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAF 803
                   +S  +   KS+++  G  V  +       +PMA + GS   +   F++ +  
Sbjct: 421 E-----EGLSPAEATKKSMSQITGALVGIAAVLSTVFIPMAFFSGSAGAIYRQFSVTIVS 475

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            +  +   +I ++  +   +  
Sbjct: 476 AMAFSVLVAIVLSPSLCATLLK 497


>gi|296274605|ref|YP_003657236.1| hydrophobe/amphiphile efflux transporter [Arcobacter nitrofigilis
           DSM 7299]
 gi|296098779|gb|ADG94729.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 1042

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/583 (11%), Positives = 168/583 (28%), Gaps = 33/583 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL            + ++P   P                     +
Sbjct: 8   RPIFAWVISIIIMLAGLGSI-----YNLPVAQYPDIAPPTIR---------ISATYTGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + L         S       I +SF      +    +V   +  
Sbjct: 54  AETVENSVTQLLEQQLTGLDGLLYFSSSSDSSGDVSIKVSFEQGTDPDIAQVQVQNKISQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++  +  T  +   ++++    +   +   + S  ++    D I   E   
Sbjct: 114 VLTRLPSSVQEQGVNVTKSQSDYLMIAALYDETDKATGSDISDYLVSNIQDSIARVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DPS+L       + +S      N        G      +     
Sbjct: 174 SIRVFGSQ-YAMRIWLDPSKLLAYKLMPSDISAAIKNQNVQVSAGSIGAMPTLANQELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I  ++             +           
Sbjct: 233 TVTAESKL-------------QTPQQFKDIIIKNDKNGALVRLSDVARVEIGNESYGTIP 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +       +  +   T +    +   L+              +      S + 
Sbjct: 280 RLNRHPASGLAVMLSSGANALSTAKRVRDVLTSLQRNMPDGYKIAYPIDSTKFISISINE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  ++   ++ + ++ T  +L + G ++   ++ G+V
Sbjct: 340 VVKTLIEAIVLVVLVVFLFLQSWRATIIPAIAVPVVLLGTFGVLQVFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +      K  S   +         +  I  + + + +   + FF
Sbjct: 400 LSIGLLVDDAIVVIENVERIMREKGLSAHDATVESMKEVSTVLIGIAVVLSAVFLPMAFF 459

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+IT+  S+++S+  A+++  A+   ++    +                 
Sbjct: 460 DGSTGVIYRQFSITIVSSMILSVIVALTLTPALCASLLNSNHLDKETGFFHWFNNTFESI 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
                 +             + +I L+    L Y +       
Sbjct: 520 TKKYSKKVFNILNKPKRWMFLYAIILVVMSYLTYKLPTSFLPL 562



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 75/201 (37%), Gaps = 9/201 (4%)

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALG 695
              +++++        +        +E    G    + S   + +++    +   W     
Sbjct: 834  MNEMSKLAKELPKGTSFAWSGLSYQEYKSSGQSAFLYSVSILFVFLCLAALYESWSIPFS 893

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             +  L L I   +   ++ G+E ++    A+LT+IG S  + +++ + +      Y    
Sbjct: 894  VLLVLPLGIIGAVTITSIRGLENDVYFQVALLTVIGLSSKNAILIVEFV---EAAYKNGH 950

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
            S  +   +         + TS+A  + VLP+AV    G +   +    +  G + A    
Sbjct: 951  SLLEAAVEGARLRFRPILMTSLAFVVGVLPLAVSTGAGANSRIAIGTGIVGGTLSATILG 1010

Query: 813  IFIAAPILLFIYDWRAKNARI 833
            +F+     + I     ++ ++
Sbjct: 1011 VFMIPLFYVLISSIFRRDKKV 1031



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 54/134 (40%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +     + + +  T G   +FG   N   +  ++  IG  V+D +VV + +    
Sbjct: 361 SWRATIIPAIAVPVVLLGTFGVLQVFGYSINTLTMFGMVLSIGLLVDDAIVVIENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  D   +S+ E     +  ++      LPMA + GS       F+I +   +
Sbjct: 419 IMREKGLSAHDATVESMKEVSTVLIGIAVVLSAVFLPMAFFDGSTGVIYRQFSITIVSSM 478

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 479 ILSVIVALTLTPAL 492


>gi|56417239|ref|YP_154313.1| preprotein translocase subunit SecD [Anaplasma marginale str. St.
           Maries]
 gi|222475603|ref|YP_002564020.1| protein-export membrane protein (secD) [Anaplasma marginale str.
           Florida]
 gi|255003593|ref|ZP_05278557.1| preprotein translocase subunit SecD [Anaplasma marginale str.
           Puerto Rico]
 gi|255004726|ref|ZP_05279527.1| preprotein translocase subunit SecD [Anaplasma marginale str.
           Virginia]
 gi|56388471|gb|AAV87058.1| protein-export membrane protein [Anaplasma marginale str. St.
           Maries]
 gi|222419741|gb|ACM49764.1| protein-export membrane protein (secD) [Anaplasma marginale str.
           Florida]
          Length = 501

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 168/514 (32%), Positives = 279/514 (54%), Gaps = 24/514 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
                +   ++C + + + +PNF+  ++L      + K + +LGLDL+GG +L+LEVD  
Sbjct: 3   PIGKAVAAFILCVVSVYLVMPNFVDSNLL------ISKKKANLGLDLQGGVYLLLEVDFH 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           +++ G L   SD L++FL KE I    +    + + LS ++ +    +            
Sbjct: 57  EYLKGRLYGLSDTLQAFLLKEKISYKRLYVKDDSLVLSLSNEKDYARVKRF--------- 107

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                    N+ V+      +I  +      ++   +  S++ +++R+D  G  E  I+ 
Sbjct: 108 -------DANVTVSGAYDRAAISFTSGYTKSLLRGVVSDSIQNVQRRLDTSGTKEIIIKS 160

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYL 242
            G  ++ +Q+PG  +P  ++ L+G TAK++FH +    S           L D+ GN Y 
Sbjct: 161 YGEDKVSLQVPGIYNPDSIKSLIGKTAKLTFHLLEEVKSLSDIDPVVTSLLSDTAGNVYP 220

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V  KVEISG  L    +       +PVV   FD +  ++  E+T+++ GK  A VLD  V
Sbjct: 221 VLKKVEISGDSLVD-ASAGLNSLGRPVVYFKFDSVATKKLAEITKNHAGKQFAAVLDNVV 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           LTAP I + I  G  +ISG F++  A  LA +L++GSLP  L I+EE+ +G  LG+ SI 
Sbjct: 280 LTAPTIREPILGGNGEISGRFSMSEAKELAVLLKSGSLPAPLRIIEEKVIGPSLGAGSIA 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G  A++A +V +  F+   YG  G+ A   +  N++  L  ++ +GATLTLP IAG+ L
Sbjct: 340 MGKVAMLASVVGVSAFVTASYGILGVFAVVGLIFNIVFVLLTMTFIGATLTLPGIAGMTL 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+++D+N+L+ ERIREE R  + +  ++D GF  A STIFDSNIT LI   ++F  G 
Sbjct: 400 TVGMSIDANVLIFERIREEIRTGRKLRLAVDKGFRNAMSTIFDSNITTLIVAAIMFIMGS 459

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            +V GFA+T+G+ IL SM +A+ + + ++   + 
Sbjct: 460 VSVSGFAVTLGVGILCSMLSAVVLTKVLIDVWVH 493



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 72/168 (42%), Gaps = 4/168 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
           ++GP +    I  G V ++ S + +  ++   +     + A+  LI +I   L      G
Sbjct: 328 VIGPSLGAGSIAMGKVAMLASVVGVSAFVTASYGIL-GVFAVVGLIFNIVFVLLTMTFIG 386

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A +   +G S++  V++++R+R+ ++        R  +DK     +     +
Sbjct: 387 ATLTLPGIAGMTLTVGMSIDANVLIFERIREEIRTGRK---LRLAVDKGFRNAMSTIFDS 443

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++   I    M + G   +  FA+ +  GI+ +  S++ +   ++   
Sbjct: 444 NITTLIVAAIMFIMGSVSVSGFAVTLGVGILCSMLSAVVLTKVLIDVW 491


>gi|28900326|ref|NP_799981.1| putative multidrug efflux membrane fusion protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260363671|ref|ZP_05776464.1| RND transporter, HAE1 family [Vibrio parahaemolyticus K5030]
 gi|260880895|ref|ZP_05893250.1| acriflavin resistance plasma membrane protein [Vibrio
           parahaemolyticus AN-5034]
 gi|260896037|ref|ZP_05904533.1| acriflavin resistance plasma membrane protein [Vibrio
           parahaemolyticus Peru-466]
 gi|28808637|dbj|BAC61814.1| putative multidrug efflux membrane fusion protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308087064|gb|EFO36759.1| acriflavin resistance plasma membrane protein [Vibrio
           parahaemolyticus Peru-466]
 gi|308091572|gb|EFO41267.1| acriflavin resistance plasma membrane protein [Vibrio
           parahaemolyticus AN-5034]
 gi|308114458|gb|EFO51998.1| RND transporter, HAE1 family [Vibrio parahaemolyticus K5030]
          Length = 1046

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/687 (10%), Positives = 186/687 (27%), Gaps = 36/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++   +  +G++      L    +  +P   P                +     
Sbjct: 9   RPKFALVISLAMTLMGMIA-----LKVLPISEYPQISPTVIT---------VSTMYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++        +    +  + + F      +    +V   +  
Sbjct: 55  ADVVKKTVAQPIEAKVNGVEDMIYMSSVIGNDGSYTLRIYFRVGADGDMAQVRVNNLVAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  +  +    +    + +      +    +I  S       ++++   E   
Sbjct: 115 ATSSLPQEVNQIGVTVKKKSSDMLGVITLRSPKQSYDSIYLSNYADLNIVERLKRIEGMS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    +P++L  L  + + +       N        G          QY
Sbjct: 175 DITLLGKKDYSMRIWLNPNKLATLKLSASDVIGAIKTQNIQVAAGKIGGMPAPGDQQYQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++ K  ++                +    I                 +           
Sbjct: 235 VLQTKGRLTSAE-------------EFENIIIRASKKGSLIRLKDVARVEVGAQGYEADG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +    +E                 +  +   +      S   
Sbjct: 282 RMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVYDIAYDSTEYVETSIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV  V+++ +   +  ++   +I +++I T A++ ++G T+   S+ G++
Sbjct: 342 VYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIMGVMGMTINTISLFGLI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +       +           +  + +  L   V +   
Sbjct: 402 LAIGIVVDDAIIVVENVERVIHEEHLDPIPATIQAMKEVTGPVLATTLILLAVFVPVALL 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFL 533
            G + R    FA+T+ +S+LIS   A+++  A+   +               N       
Sbjct: 462 PGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLKSTHSQPIAPLRAFNRGFEAIT 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 + F+  R           I  +   F    +  +  +      V    P   ++
Sbjct: 522 RKYQGLVGFLSRRIVLSIGVYGALIAVLAFAFMTVPSSFVPNEDKGVFMVEMRLPDAAAL 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            R+     +  D   Q    E    V        +      + ++K           +  
Sbjct: 582 QRTAPLMKKYVDELKQMEGVENVVSVAGFSVINMASIPNSGMLIIKLDNWSKRKDPELHQ 641

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAM 680
             ++                + +  A+
Sbjct: 642 RALMNKVNQMLNSTPDAASFVFATPAI 668



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  +   +  +     L   Q    +++     ++   K+  +  P   + 
Sbjct: 266 DVARVEVGAQGYEADGRMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +      +     I +    ++I+ + +   +++  + W   +     + + I  T    
Sbjct: 326 DIAYDSTEYVETSIDEVYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G+  N  ++  ++  IG  V+D ++V + +     ++   +       +++ E  G 
Sbjct: 386 GVMGMTINTISLFGLILAIGIVVDDAIIVVENV--ERVIHEEHLDPIPATIQAMKEVTGP 443

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + T++      +P+A+  G        FA+ +   ++++A +++ +   +   +  
Sbjct: 444 VLATTLILLAVFVPVALLPGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLK 500



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 77/279 (27%), Gaps = 10/279 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                  +                    ++  +        ++ +   D            
Sbjct: 763  RSYQVKVQAEEQYRDNIDDIDHLFVRSSSGKMVSLATLVKVKPIFGPDTLSNYNMFSSAT 822

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +         S    + +E +  +                  K          +   +S 
Sbjct: 823  VNGAPAPGYSSGDVVKAIEKLAAESLPSGYSYEWSGMTYQEMKAGNM----APIAFALSL 878

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +   +++  +++ W      +  + + I   +G   L G  F+L     V+ LIG S   
Sbjct: 879  LFTYLFLVAQYESWTIPAAVMMAVPVAILGAMGTLLLVGQPFDLYVQIGVVILIGMSAKV 938

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ +  +  +      +S  D   ++          T+ A    V P+ +    G + 
Sbjct: 939  AILIVEFAK--VLREEKGLSIIDAAKEAARIRFRAVQMTAFAFIWGVFPLVIASGAGAAS 996

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              S    +  G++++      +     + +   R K  R
Sbjct: 997  RHSLGFAVFGGMILSTFVGTLLTPVFFVMMQSLREKFKR 1035


>gi|260903099|ref|ZP_05911494.1| RND transporter, HAE1 family [Vibrio parahaemolyticus AQ4037]
 gi|308107754|gb|EFO45294.1| RND transporter, HAE1 family [Vibrio parahaemolyticus AQ4037]
          Length = 1046

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/687 (10%), Positives = 186/687 (27%), Gaps = 36/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++   +  +G++      L    +  +P   P                +     
Sbjct: 9   RPKFALVISLAMTLMGMIA-----LKVLPISEYPQISPTVIT---------VSTMYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++        +    +  + + F      +    +V   +  
Sbjct: 55  ADVVKKTVAQPIEAKVNGVEDMIYMSSVIGNDGSYTLRIYFRVGADGDMAQVRVNNLVAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  +  +    +    + +      +    +I  S       ++++   E   
Sbjct: 115 ATSSLPQEVNQIGVTVKKKSSDMLGVITLRSPKQSYDSIYLSNYADLNIVERLKRIEGMS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    +P++L  L  + + +       N        G          QY
Sbjct: 175 DITLLGKKDYSMRIWLNPNKLATLKLSASDVIGAIKTQNIQVAAGKIGGMPAPGDQQYQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++ K  ++                +    I                 +           
Sbjct: 235 VLQTKGRLTSAE-------------EFENIIIRASKKGSLIRLKDVARVEVGAQGYEADG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +    +E                 +  +   +      S   
Sbjct: 282 RMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVYDIAYDSTEYVETSIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV  V+++ +   +  ++   +I +++I T A++ ++G T+   S+ G++
Sbjct: 342 VYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIMGVMGMTINTISLFGLI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +       +           +  + +  L   V +   
Sbjct: 402 LAIGIVVDDAIIVVENVERVIHEEHLDPIPATIQAMKEVTGPVLATTLILLAVFVPVALL 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFL 533
            G + R    FA+T+ +S+LIS   A+++  A+   +               N       
Sbjct: 462 PGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLKSTHSQPIAPLRAFNRGFEAIT 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 + F+  R           I  +   F    +  +  +      V    P   ++
Sbjct: 522 RKYQGLVGFLSRRIVLSIGVYGALIAVLAFAFMTVPSSFVPNEDKGVFMVEMRLPDAAAL 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            R+     +  D   Q    E    V        +      + ++K           +  
Sbjct: 582 QRTAPLMKKYVDELKQMEGVENVVSVAGFSVINMASIPNSGMLIIKLDNWSKRKDPKLHQ 641

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAM 680
             ++                + +  A+
Sbjct: 642 RALMNKVNQMLNSTPDAASFVFATPAI 668



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  +   +  +     L   Q    +++     ++   K+  +  P   + 
Sbjct: 266 DVARVEVGAQGYEADGRMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +      +     I +    ++I+ + +   +++  + W   +     + + I  T    
Sbjct: 326 DIAYDSTEYVETSIDEVYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G+  N  ++  ++  IG  V+D ++V + +     ++   +       +++ E  G 
Sbjct: 386 GVMGMTINTISLFGLILAIGIVVDDAIIVVENV--ERVIHEEHLDPIPATIQAMKEVTGP 443

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + T++      +P+A+  G        FA+ +   ++++A +++ +   +   +  
Sbjct: 444 VLATTLILLAVFVPVALLPGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLK 500



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 77/279 (27%), Gaps = 10/279 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                  +                    ++  +        ++ +   D            
Sbjct: 763  RSYQVKVQAEEQYRDNIDDIDHLFVRSSSGKMVSLATLVKVKPIFGPDTLSNYNMFSSAT 822

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +         S    + +E +  +                  K          +   +S 
Sbjct: 823  VNGAPAPGYSSGDVVKAIEKLAAESLPSGYSYEWSGMTYQEMKAGNM----APIAFALSL 878

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +   +++  +++ W      +  + + I   +G   L G  F+L     V+ LIG S   
Sbjct: 879  LFTYLFLVAQYESWTIPAAVMMAVPVAILGAMGTLLLVGQPFDLYVQIGVVILIGMSAKV 938

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ +  +  +      +S  D   ++          T+ A    V P+ +    G + 
Sbjct: 939  AILIVEFAK--VLREEKGLSIIDAAKEAARIRFRAVQMTAFAFIWGVFPLVIASGAGAAS 996

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              S    +  G++++      +     + +   R K  R
Sbjct: 997  RHSLGFAVFGGMILSTFVGTLLTPVFFVMMQSLREKFKR 1035


>gi|186682407|ref|YP_001865603.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Nostoc
           punctiforme PCC 73102]
 gi|186464859|gb|ACC80660.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Nostoc
           punctiforme PCC 73102]
          Length = 1097

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/686 (11%), Positives = 174/686 (25%), Gaps = 45/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G +       P   L+  P   P               + +   
Sbjct: 11  KRPVLTTVCTLLILIVGGVCI-----PLLPLNYLPDIAP-------------IRVQVSAS 52

Query: 62  EDDFVNGFLQMY----SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++       +   + ++       +     ++I++ F     K      V  
Sbjct: 53  YTGADVETVETAVTTTLERQINGVEGMQYMTSNSSAGSSQISVYFGAQTDKNIAQVNVQN 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L    ++  +   T     +++     +     A+  S  I     DQ+  +
Sbjct: 113 RLARATPRLPTTVQQFGVTAQTSSTSILLVYALYPENNEYDALFISNYIDLNLRDQLLRT 172

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+ L     T   ++      N        G   +    
Sbjct: 173 PGVGDLTIFGEKQYAMRLWLDPNALASRGLTVTDVATALRSQNILAGAGTLGQSPIPPGQ 232

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                           +            +    +                         
Sbjct: 233 SY-------------EIPLRINGQFKDASEFENLVIQAGSNGNLIKLQDVGRAELGSETY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +     +        L     P     +    VG    
Sbjct: 280 TSNARNNGKPSIGIAIYQSPGSNALDVSKNVQAQMNELMKDFPPGLKAEIVYDTVGFVQA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  ++   +I +++I  LA   +   +L   ++
Sbjct: 340 SLEEVLKTLVEAIALVVLVIFLFLQNWRATIIPLVAIPVSLIGALAFAYVFRFSLNNLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G++L  GL VD  I+V E I  +  +      +           +  +++  +   + +
Sbjct: 400 FGLILATGLVVDDAIIVVEAIARKVEQGMRPLQASVEAMDELTGAVVSTSLVLMAVFIPV 459

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINPL 528
            FF    G   + FA+ +  SI IS F A+S   ++   ++R  +               
Sbjct: 460 AFFPGSTGKMYQQFALIIAFSIAISTFNALSFSPSISAILLRPPRPARGPLGWFFSRFNR 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
              ++I   +AI     R     I +     +        +  G        + +   + 
Sbjct: 520 ILQWIIEKYLAIVNFLIRIRYAVIGLFVVGLAATYFMFTHVPTGFVPSEDQGIVLGIIQG 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ-PGDSVAQTRVLEMVKKKITEIVP 647
            D   +      ++  +   +      N      +   G    +      +K       P
Sbjct: 580 PDGVALNYTDRVIEKLEQILEKEPEVDNIFATSGFGFAGSGSNRGVFFAKLKPWEERSQP 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
             T         +    +    I  V
Sbjct: 640 NQTASAILTRINREFATIPEAIITAV 665



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 77/201 (38%), Gaps = 9/201 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      +  + K     +    + +T         E+++  +  + +  + + +++   
Sbjct: 307 SKNVQAQMNELMKDFPPGLKAEIVYDTVGFVQASLEEVLKTLVEAIALVVLVIFLFLQ-- 364

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  +  + + +   L F  +F    N   +  ++   G  V+D ++V + +   
Sbjct: 365 -NWRATIIPLVAIPVSLIGALAFAYVFRFSLNNLTLFGLILATGLVVDDAIIVVEAI--- 420

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
            +     +       ++++E  G  V TS+      +P+A + GS       FA+ +AF 
Sbjct: 421 ARKVEQGMRPLQASVEAMDELTGAVVSTSLVLMAVFIPVAFFPGSTGKMYQQFALIIAFS 480

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           I ++  +++  +  I   +  
Sbjct: 481 IAISTFNALSFSPSISAILLR 501



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 91/251 (36%), Gaps = 12/251 (4%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            N+ V LS V     +     IS  N     +   R         A   + + V +  T  
Sbjct: 797  NQMVRLSEVAKITPTTGPSVISHYNGFRAIDIQGREASGYSSGQAIQAMQQAVTEAATP- 855

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDI 704
               S    T              GI+      I + + +  +++ Y      + T+ L +
Sbjct: 856  GVGSDWIGTAREELSAGNL----GILIFGFGIIMVFLTLAAQYESYIDPAIILLTVPLAL 911

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
               L   AL G+  ++ A  A++ LIG +  + +++ +   + ++     ++ R     +
Sbjct: 912  LGALSALALRGLVNDVYANVALVMLIGLASKNAILIVEFANQALEE---GLTIRQAAITA 968

Query: 765  INETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
              E     V TS A+ +   P+ +    G +   S    +  G++VA   S+ I   + +
Sbjct: 969  AQERFRPIVMTSSASLLGFFPLVIATGAGSASRWSLGTALFGGLLVATILSLLIVPVLYV 1028

Query: 822  FIYDWRAKNAR 832
             I +   +  +
Sbjct: 1029 IIKNLEERFLK 1039


>gi|294010575|ref|YP_003544035.1| preprotein translocase SecF subunit [Sphingobium japonicum UT26S]
 gi|292673905|dbj|BAI95423.1| preprotein translocase SecF subunit [Sphingobium japonicum UT26S]
          Length = 328

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/283 (34%), Positives = 159/283 (56%), Gaps = 2/283 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD   I F++ R W   ++ L ++ ++   F  GLN G+DF GG+ +      
Sbjct: 1   MKLLKLVPDNTNIGFVKLRHWAFALTALLTVLAVGATFYKGLNLGVDFVGGLMIEAKFET 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV-AQTRVLEMVKKKITEIV 646
           P     VRS ++ L +GD S Q F   K   +RL         A   ++E  +K +T   
Sbjct: 61  PPQTDRVRSVIDRLGVGDGSLQQFGDPKTVQIRLPLPEQGGAGAANAIVEKARKAMTAEF 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P  T    + V  K+S ELI+ G++ V+++ I + I+ W R++W F +     ++ D+  
Sbjct: 121 PGVTFSRYDTVSGKVSGELIQNGVLAVMLAVIGIAIFSWFRYEWQFGVSTFVAIMHDVLM 180

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           TLGFFA+  +EF+L  VAAVLT++GYS+NDK+V+ DR+R+NM+ Y   +  + LID S+N
Sbjct: 181 TLGFFAVTQLEFDLNIVAAVLTIVGYSINDKMVIDDRIRENMRKYRK-MDMKSLIDLSVN 239

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
           ETL R+V TS+   +++  + + GG V+  F   M  GI+V  
Sbjct: 240 ETLPRTVMTSVTVLLALGALLLLGGHVLRGFTAAMMLGIIVGT 282


>gi|167567306|ref|ZP_02360222.1| multidrug efflux protein [Burkholderia oklahomensis EO147]
          Length = 1043

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/622 (12%), Positives = 170/622 (27%), Gaps = 41/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+            + ++P   P              +       
Sbjct: 8   RPVFAWVISLFIMLGGIFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +        +    Q  + L+F      +  A  V   L+ V
Sbjct: 54  AQVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLYLTFKQGVSADLAAVDVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      +   ++     +     A++         +  +   E   +
Sbjct: 114 EARLPEPVRRDGISVEKAADNIQLVVSLTSEDGRMSAVQLGEYASANVVQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L  L  T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKLAALNLTASDIATAVRAHNARVTIGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +S                                +      I            
Sbjct: 233 VLADAPLS-------------TPDAFGAIALRARADGSTLYLRDVAKIEFGGNDYNYPSF 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +             A  +   T +        L     P     +          S    
Sbjct: 280 VNGKTATGMGIKLAAGSNAVATEKRVRATMDDLSKFFPPGVTYQIPYETSSFVRVSMQKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+F+ +   +  L+    + + ++ T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFAVMFLFMQNFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+ + +SI  S F A+S+  A+   +++       +      +F      
Sbjct: 460 GAVGNIYRQFALALAVSIGFSAFLALSLTPALCATLLKPVADDHHEKRGFFGWFNRFVAR 519

Query: 539 AIQFMRAR---------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           A      R          W V    L +  ++ L          + +G   + V+  +  
Sbjct: 520 ATNRYTRRVGQVLKRPLRWLVVYGALTAGAALLLTKLPTAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNF 611
            L+    ++  ++      +  
Sbjct: 580 PLAETMQSVRRVEEYVRKKEPS 601



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 73/203 (35%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    ++ + K     V       T        ++++   I   ++    M +++ 
Sbjct: 300 ATEKRVRATMDDLSKFFPPGVTYQIPYETSSFVRVSMQKVVTTLIEAGVLVFAVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +   +   K++ +  G  V  ++      +PMA +GG+V      FA+ +A
Sbjct: 416 -ERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALALA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 70/210 (33%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           I  I              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAAGHSSGEAMAAIERIASTLPAGVGYAWSGQSFEERLSGAQAPMLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W      +  + L +   +    L G+  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPFAVMLVVPLGVIGAVAGVTLRGMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ +  +    L    +S  D   ++    L   V TS+A  + VLP+A   G       
Sbjct: 938  LIVEVAKD---LVAQRMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFATGAASGAQV 994

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +    +  G+V A   +IF+     + +  
Sbjct: 995  AIGTGVLGGVVSATLFAIFLVPLFFVCVGR 1024


>gi|325928463|ref|ZP_08189654.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
 gi|325541180|gb|EGD12731.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
          Length = 1073

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/680 (11%), Positives = 185/680 (27%), Gaps = 43/680 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R+    V++  ++  +G++        +  L   P+  P               +    
Sbjct: 40  LRSPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTG 85

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    ++  + ++         R   + I++ F  SR  E  A+ V   + 
Sbjct: 86  ASAAVVESRITQVLEDALAGIEGISTIEARSRNGSSDISIEFVQSRDVEAAANDVRDAVS 145

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+ ++    +   +         I+    +        ++ S    R  +D+    +  
Sbjct: 146 RVSDRMPDQARPPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGV 203

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q     R    +    D  +L     T A +       N               +   +
Sbjct: 204 AQVRIGGRQRYAMRIWLDRDQLAARELTVADVEAALQNENVELPAGSIESAQRDFTLRVE 263

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  +                             G           +    A     
Sbjct: 264 RSYLKPED-------------------FAKLPLNKGEGGYVVRLGDVARVELTSAERRAY 304

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                           +  +       A   A  ++          V          +  
Sbjct: 305 FQSNGVPNVGLGIVRNSTANALDVAREARAQAEEVQKSLPKGTNIFVAFDTTTFIDAAVE 364

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LVL+V+++ +   +  L+   ++ + +I     L     ++ L ++  +
Sbjct: 365 RVYHTLVEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLAL 424

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E I+      +    +   G  +    +  +    +   + + F 
Sbjct: 425 VLCIGLVVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFL 484

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFF 532
            G      R  A+ +  ++ IS F A+++   M   +                +   +  
Sbjct: 485 EGNTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRAHGQAKPNRFHRWFDGRMQAV 544

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                 +++    R W   + +L ++ +   L     +     +      ++ + P    
Sbjct: 545 SGAYGRSLERHVHRTWIFALLMLLALGASAWLMGRIPSELAPAEDRGNFQIMIDGPEGAG 604

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              +  +  Q+ DI       +K  +      PG   +   +         +     +  
Sbjct: 605 FDYTVGQMHQVEDILRPFVGPDKPIVRANPRVPGGFGSSEEMHTGRVSVFLQDWEKRSRP 664

Query: 653 NTEIVGPKISRELIRKGIVG 672
            TE+      +  +  G+  
Sbjct: 665 TTEVADEVQQKLNVLSGVRA 684



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 891  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 950

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     S    I +S +  L   + TS+A  +  +P+ V
Sbjct: 951  LVGLAAKNGILIVEFAN---QLRDEGRSVHAAIVESASVRLRPILMTSIATVVGAIPLVV 1007

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GG       +  + + FG+ ++   S+++       I  +      +
Sbjct: 1008 AGGPGSASRATIGVVVIFGVSLSTLLSLYVVPAFYSLIAPFTKSPEAV 1055



 Score = 43.5 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 3/107 (2%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL    T+ + +         F    NL  + A++  IG  V+D +VV + +    + 
Sbjct: 389 RAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENI---QRR 445

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                       +   +     + T+       LP+    G+    F
Sbjct: 446 IDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEGNTGRLF 492


>gi|150395290|ref|YP_001325757.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Sinorhizobium
           medicae WSM419]
 gi|150026805|gb|ABR58922.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium medicae WSM419]
          Length = 1061

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 53/503 (10%), Positives = 134/503 (26%), Gaps = 28/503 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +    +  +P  +P   +                  
Sbjct: 10  RPVFAGVLSVIIFVAGLI-----GMTGLPISEYPEVVPPQIV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PAVIAETVATPLEEQINGVEGMLYMQSQATADGLMTLTVTFELGTDPDQAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   +   
Sbjct: 116 AEPRLPEEVRRLGVTTVKSSPDLTLVVHLISPNGQYDINYLRNYGVLNVKDRLARVDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +     + ++      N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRVWIDPEKAAERGLAASDIANAVRGQNVQAAAGVIGASPSVPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                      +     G           +    A      
Sbjct: 236 SVNAQGRL-------------KTPEDFADIVVKSGEGGEITRLGDVARVEMGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     E    + A L+          +          S   
Sbjct: 283 LLDNKAAVGMGVFQAPGSNAIEISENVHKVMAELKQTMPEGVDYEIVYDTTQFVRASIES 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T A++ + G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVIVVIVFLQTWRASIIPLVAVPVSIVGTFAVMYVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +     +  S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNISQGLSPVQATYRAMQEVSGPIIAIALVLVAVFVPLAFIT 462

Query: 482 GGAVRGFAITMGLSILISMFTAI 504
           G   + +        + ++ +A+
Sbjct: 463 GLTGQFYRQFALTIAISTVISAL 485



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 77/188 (40%), Gaps = 9/188 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S    +V+  +K+ + E V    + +T          +I   +  + +  I +++++   
Sbjct: 306 SENVHKVMAELKQTMPEGVDYEIVYDTTQFVRASIESVIHTLLEAIALVVIVVIVFLQTW 365

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N
Sbjct: 366 RASIIPL---VAVPVSIVGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           +   +  +S      +++ E  G  +  ++      +P+A      G     FA+ +A  
Sbjct: 423 I---SQGLSPVQATYRAMQEVSGPIIAIALVLVAVFVPLAFITGLTGQFYRQFALTIAIS 479

Query: 805 IVVAASSS 812
            V++A +S
Sbjct: 480 TVISALNS 487



 Score = 45.8 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I   L    L G + N+     ++ L+G S  + +++ +  R+   L  +  +     
Sbjct: 915  MGIMAALTGVWLTGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE---LELSGSNAVSAA 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + TSMA  + V+P+      G  +  +  + +  G++   +  IF+   
Sbjct: 972  IEASRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRSAMGVAVFAGMIGVTAFGIFMTPV 1031

Query: 819  ILLFIYD 825
              + I  
Sbjct: 1032 FYVLIRK 1038


>gi|113474694|ref|YP_720755.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Trichodesmium
           erythraeum IMS101]
 gi|110165742|gb|ABG50282.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Trichodesmium erythraeum IMS101]
          Length = 1068

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/620 (10%), Positives = 168/620 (27%), Gaps = 46/620 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  IGL+           +  FPS                        
Sbjct: 8   KRPVFASVCSLLIILIGLV-----GYISLPVQEFPSIDTPVV---------SVRTNYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + ++       S R+  + I + F  SR  E  A  V   +  
Sbjct: 54  SPEVVETEVTEILEAEINGVEGVKTLTSSTREGSSSINVEFQLSRNIEAAAQDVRSRVSR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +    ++   +  E  I+      +     ++E S    +   + +       
Sbjct: 114 AMRRLPNEVDAPVVSKRSSDEERIIWLSLTGE--KYSSLELSNYADKFIKNILETVNGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P ++     T   +       N          +          
Sbjct: 172 SVFIGGERRYAMRLWLNPQKMAARNITALDVKQALRQQNVEIPSGRIEGKSTEYPIRTIG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +                             
Sbjct: 232 RLQTPEA-------------------YENLVIRRNDDTSLTRFKDIGRAEIGAESNRTIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S  +  +      +       L           V          +   
Sbjct: 273 RYNGKPAIGIGISKLSGANIIEVATSVKTRMKELSKDFPDGMEYYVSVDYSTFVEVAIKE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      LV++V++M +   +  ++   +I +++I    ++  +G ++   ++  + 
Sbjct: 333 VWKSLLFAICLVVLVIYMFLQNWRATIIPTITIPISLIGAFGVMFFMGFSINTLTLFALT 392

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L  GL VD  I++ E I     +K ++   +  +G       +  + I  +   + + F 
Sbjct: 393 LSTGLVVDDAIVILENIVRYIQQKGKTPMEAAILGVGEVVFAVIATTIVLIAVFLPVGFS 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530
           G   G     FA+T+ +S++ S F A+++  ++   I        +   +  +   PL+ 
Sbjct: 453 GGGAGRIFNEFALTIAVSVVFSTFVALTLAPSLSGRILKKQEPEEQKNFISRLFTIPLNL 512

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
           F      I++ + R+    + I  L  +  I   +     +    +G +         V 
Sbjct: 513 FDYALSRISVIYDRSLRLLMRIKPLVILGFILSFWIIVWLFQQLPQGFLPTEDRGRVFVS 572

Query: 591 LSVVRSNLESLQIGDISFQN 610
           ++             +    
Sbjct: 573 VTAPEGVSIEYTDNVMGQVE 592



 Score = 80.9 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 89/281 (31%), Gaps = 9/281 (3%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R   V I                +      +    L +  N    L+  +    +    +
Sbjct: 207 RQQNVEIPSGRIEGKSTEYPIRTIGRLQTPEAYENLVIRRNDDTSLTRFKDIGRAEIGAE 266

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV---KKKITEIVPLSTIQNTEIVGPKIS 662
            +           + +            V   V    K++++  P        +      
Sbjct: 267 SNRTIARYNGKPAIGIGISKLSGANIIEVATSVKTRMKELSKDFPDGMEYYVSVDYSTFV 326

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721
              I++    ++ +   +++ I++  + W   +    T+ + +    G     G   N  
Sbjct: 327 EVAIKEVWKSLLFAICLVVLVIYMFLQNWRATIIPTITIPISLIGAFGVMFFMGFSINTL 386

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            + A+    G  V+D +V+ + + + ++      +  +     + E +   + T++    
Sbjct: 387 TLFALTLSTGLVVDDAIVILENIVRYIQQ--KGKTPMEAAILGVGEVVFAVIATTIVLIA 444

Query: 782 SVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
             LP+   GG        FA+ +A  +V +   ++ +A  +
Sbjct: 445 VFLPVGFSGGGAGRIFNEFALTIAVSVVFSTFVALTLAPSL 485



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 64/156 (41%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ I + + +  +F+ Y   L  + ++ L +    G   L  +E N+ +   ++ LIG 
Sbjct: 869  GLALIFIFLTLAAQFESYIDPLVILLSVPLSLLGAFGALWLADLEVNVYSRIGLIMLIGL 928

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +   + +      +S      ++        + T  +    V+P+A     
Sbjct: 929  ATKNSILIVEFANQLLAE---GMSITKAAIEASRLRFRPILMTGFSTIFGVMPLAFASGP 985

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G +   S  + +  G++V+   ++++     + +  
Sbjct: 986  GAASRVSIGMSVMGGMLVSTVLTLYVVPVFYVVMGK 1021


>gi|307294962|ref|ZP_07574804.1| protein-export membrane protein SecF [Sphingobium chlorophenolicum
           L-1]
 gi|306879436|gb|EFN10654.1| protein-export membrane protein SecF [Sphingobium chlorophenolicum
           L-1]
          Length = 328

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 99/283 (34%), Positives = 163/283 (57%), Gaps = 2/283 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD   I F++ R W   ++ L ++ ++   F  GLN G+DF GG+ +    ++
Sbjct: 1   MKLLKLVPDNTNIGFVKLRHWAFALTALLTVLAVGATFYKGLNMGVDFVGGLMIEAKFDQ 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV-AQTRVLEMVKKKITEIV 646
           PV    VR+ ++ L +GD S Q F   +   +RL         A   ++E  +K +T   
Sbjct: 61  PVQTDKVRTVIDRLGVGDGSLQQFGDPRTVQIRLPLPEQGGAGAANAIVEKARKAMTAEF 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P  T    + V  K+S ELI+ G++ V+++ I + I+ W+R++W F +     ++ D+  
Sbjct: 121 PGVTFSRYDTVSGKVSGELIQNGVLAVMLAVIGIAIFSWLRYEWQFGVSTFVAIMHDVLM 180

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           TLGFFAL  +EF+L  VAAVLT++GYS+NDK+V+ DR+R+NM+ Y   +  + LID S+N
Sbjct: 181 TLGFFALTQLEFDLNIVAAVLTIVGYSINDKMVIDDRIRENMRKYRK-MDMKALIDLSVN 239

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
           ETL R+V TS+   +++  + + GG V+  F   M  GI+V  
Sbjct: 240 ETLPRTVMTSVTVLLALGALLLLGGHVLRGFTAAMMLGIIVGT 282


>gi|288940681|ref|YP_003442921.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Allochromatium vinosum DSM 180]
 gi|288896053|gb|ADC61889.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Allochromatium vinosum DSM 180]
          Length = 1039

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++       PQ  + R+PS  P               + L    
Sbjct: 8   RPVFAWVIALFIVLAGVIAI-----PQLPIARYPSVAPPT-------------VTLYATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L      ++   L           S+    + +IT +F      E     V  
Sbjct: 50  PGATPQTLNDSVVSQIERELSGVKNLLYFESSVDTSGSAQITATFKPGTDAELAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ +  +L    ++N L   +     +++            +  +    R  + ++   
Sbjct: 110 RIKAIEPRLPQAVRQNGLQVESAASGFLMMVGMTSPNGQFDEVALNDYFARNIVQELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L     T  +++      N        G        
Sbjct: 170 DGVGRVQLFGA-EQAMRIWVDPNKLTAYGLTMNELAQAIEQQNAPIAPGRIGDEPALPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + +++                +    +        +        +       
Sbjct: 229 RLTVPLTVQGQLT-------------TPEQFAAVVLRAGADGAKVVLGDVARVELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                        A        +   T        A L           V          
Sbjct: 276 GFSNRENGVAATSAAIQLSPGANAVRTAAAVRARLAELAPSLPAGMAYSVPFDTAPFVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++ L+      + ++ T A++ L G ++   ++
Sbjct: 336 SIEKVIYTLLEAMVLVFLVMYLFLQNLRYTLIPAIVAPIALLGTFAVMLLAGFSINSLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +           I    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERLMATQGLSPREATARAMREITGAIVGITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F  G      + F ++M +SIL S F A+S+  A+   +
Sbjct: 456 MAFGSGSVGVIYQQFTLSMAVSILFSAFLALSLTPALCATL 496



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 83/246 (33%), Gaps = 16/246 (6%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q    S +                 ++V     +     ++   +P 
Sbjct: 260 VVLGDVARVELGAQSYGFSNRENGVAATSAAIQLSPGANAVRTAAAVRARLAELAPSLPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + + +++     R+    A+ A   L   
Sbjct: 320 GMAYSVPFDTAPFVKVSIEKVIYTLLEAMVLVFLVMYLFLQNLRYTLIPAIVAPIAL--- 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N   +  ++  IG  V+D +VV + +     + T  +S R+   +
Sbjct: 377 -LGTFAVMLLAGFSINSLTMFGMVLAIGIIVDDAIVVVENV--ERLMATQGLSPREATAR 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E  G  V  ++    +V     +G   +      F + MA  I+ +A  ++ +   +
Sbjct: 434 AMREITGAIVGITL-VLTAVFIPMAFGSGSVGVIYQQFTLSMAVSILFSAFLALSLTPAL 492

Query: 820 LLFIYD 825
              +  
Sbjct: 493 CATLLR 498



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 66/176 (37%), Gaps = 6/176 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +++   +P            +  +   +  ++ ++ + +  L+   +   W   L  
Sbjct: 835  AEMERLVAQLPSGFAVAWTGQSLQERQSAAQAPLLMLLSALVVFLVLAALYESWSIPLSV 894

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +  + L +   +    L G+  +L     ++T+IG S  + +++ +  R   +L+    +
Sbjct: 895  MLVVPLGLLGAVAAVMLRGMPNDLFFKVGMITIIGLSAKNAILIVEFAR---QLHAEGRT 951

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAA 809
              D    +    L   + TS+A  + V+P+ +  G       +    +  G++   
Sbjct: 952  LIDAATTAARRRLRPILMTSLAFTLGVMPLMLATGASAETQQAIGTGVFGGMLSGT 1007


>gi|254995407|ref|ZP_05277597.1| preprotein translocase subunit SecD [Anaplasma marginale str.
           Mississippi]
          Length = 501

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 167/514 (32%), Positives = 279/514 (54%), Gaps = 24/514 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
                +   ++C + + + +PNF+  ++L      + K + +LGLDL+GG +L+LEVD  
Sbjct: 3   PIGKAVAAFILCVVSVYLVMPNFVDSNLL------ISKKKANLGLDLQGGVYLLLEVDFH 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           +++ G L   SD L++FL KE I    +    + + LS ++ +    +            
Sbjct: 57  EYLKGRLYGLSDTLQAFLLKEKISYKRLYVKDDSLVLSLSNEKDYARVKRF--------- 107

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                    N+ V+      +I  +      ++   +  S++ +++R+D  G  E  I+ 
Sbjct: 108 -------DANVTVSGAYDRAAISFTSGYTKSLLRGVVSDSIQNVQRRLDTSGTKEIIIKS 160

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYL 242
            G  ++ +Q+PG  +P  ++ L+G TAK++FH +    S           L D+ GN Y 
Sbjct: 161 YGEDKVSLQVPGIYNPDSIKSLIGKTAKLTFHLLEEVKSLSDIDPVVTSLLSDTAGNVYP 220

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V  KVEISG  L    +       +PVV   FD +  ++  E+T+++ GK  A VLD  V
Sbjct: 221 VLKKVEISGDSLVD-ASAGLNSLGRPVVYFKFDSVATKKLAEITKNHAGKQFAAVLDNVV 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           LTAP I + I  G  +ISG F++  A  LA +L++G+LP  L I+EE+ +G  LG+ SI 
Sbjct: 280 LTAPTIREPILGGNGEISGRFSMSEAKELAVLLKSGALPAPLRIIEEKVIGPSLGAGSIA 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G  A++A +V +  F+   YG  G+ A   +  N++  L  ++ +GATLTLP IAG+ L
Sbjct: 340 MGKVAMLASVVGVSAFVTASYGILGVFAVVGLIFNIVFVLLTMTFIGATLTLPGIAGMTL 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+++D+N+L+ ERIREE R  + +  ++D GF  A STIFDSNIT LI   ++F  G 
Sbjct: 400 TVGMSIDANVLIFERIREEIRTGRKLRLAVDKGFRNAMSTIFDSNITTLIVAAIMFIMGS 459

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            +V GFA+T+G+ IL SM +A+ + + ++   + 
Sbjct: 460 VSVSGFAVTLGVGILCSMLSAVVLTKVLIDVWVH 493



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 72/168 (42%), Gaps = 4/168 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
           ++GP +    I  G V ++ S + +  ++   +     + A+  LI +I   L      G
Sbjct: 328 VIGPSLGAGSIAMGKVAMLASVVGVSAFVTASYGIL-GVFAVVGLIFNIVFVLLTMTFIG 386

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A +   +G S++  V++++R+R+ ++        R  +DK     +     +
Sbjct: 387 ATLTLPGIAGMTLTVGMSIDANVLIFERIREEIRTGRK---LRLAVDKGFRNAMSTIFDS 443

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++   I    M + G   +  FA+ +  GI+ +  S++ +   ++   
Sbjct: 444 NITTLIVAAIMFIMGSVSVSGFAVTLGVGILCSMLSAVVLTKVLIDVW 491


>gi|89900850|ref|YP_523321.1| hydrophobe/amphiphile efflux-1 HAE1 protein [Rhodoferax
           ferrireducens T118]
 gi|89345587|gb|ABD69790.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodoferax ferrireducens T118]
          Length = 1052

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/630 (12%), Positives = 166/630 (26%), Gaps = 51/630 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G +        Q  + ++P+  P               + +    
Sbjct: 8   RPIFAWVIAIFIMVLGGVSI-----KQLPIAQYPTVAPPT-------------IQISAAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+      +   +    G+         N    I+LSF            V  
Sbjct: 50  PGATAQTLEDSVLAVIEREMNGATGLAYMESTSQANGTGSISLSFEPGTDPALAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L     +  +     +   ++ +  +           +    R  + ++   
Sbjct: 110 RLARATPRLPTIVNQQGVRVEKSRANFLLFTMLSSKNPDVTLDMLNDYAARNVLPELQRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DPS+LR    +  +++      N        G        
Sbjct: 170 TGVGTVTQFGS-ERAMRIWIDPSKLRGFNLSLDQVNAAIRAQNAQISAGNLGDLPSAPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    ++S +                   +                 I       
Sbjct: 229 TMNATIVVPGQLSSVE-------------SFGKIVLRANTDGSTVRLKDVARIELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +   +  A L+          +          
Sbjct: 276 STSARLNGQPAVGLGVQLTPTANALATAKAVKVKLAELQPLFPQGVSYTIPYDTSIFISA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ ++    + + ++ T   L  +G ++ + ++
Sbjct: 336 SIGKVVETLLEAMLLVFLVMFLFLQNIRYTIIPTIVVPVALLGTFGALLAMGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL +G+ VD  I+V E +      +      +      +    I    +  +   V 
Sbjct: 396 FGMVLVVGIVVDDAIVVVENVERIMSEEGLPPLQAARKAMGQISGAIIGITVVLISVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMI----------FIIRYKKMKSI 523
           L FF    G   R F+ TM  SI  S F A+S+  A+             + +       
Sbjct: 456 LAFFAGSTGNIYRQFSATMATSIAFSAFLALSLTPALCATLLKPVEAGHHLEKGGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    S        +A    RA    +   +L  +  +  +         + +G I   V
Sbjct: 516 NRGFKSTAKNYEGGLAKLLKRAGRMMIVYVMLIGVVGLIYMRLPTSFLPNEDQGYIVTNV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                  L   RS L  ++   +       
Sbjct: 576 QLPAGATLERTRSVLTQVEGYMLKQPEIAN 605



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 80/222 (36%), Gaps = 8/222 (3%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           + Q   G    L         + A    L  ++    + V  +   +T I       +++
Sbjct: 282 NGQPAVGLGVQLTPTANALATAKAVKVKLAELQPLFPQGVSYTIPYDTSIFISASIGKVV 341

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
              +  +++  + M +++       + +     + + +  T G     G   N+  +  +
Sbjct: 342 ETLLEAMLLVFLVMFLFLQ---NIRYTIIPTIVVPVALLGTFGALLAMGFSINVLTMFGM 398

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           + ++G  V+D +VV + +     +    +       K++ +  G  +  ++      +P+
Sbjct: 399 VLVVGIVVDDAIVVVENV--ERIMSEEGLPPLQAARKAMGQISGAIIGITVVLISVFVPL 456

Query: 787 AVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           A + GS       F+  MA  I  +A  ++ +   +   +  
Sbjct: 457 AFFAGSTGNIYRQFSATMATSIAFSAFLALSLTPALCATLLK 498



 Score = 45.1 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++     ++T+IG S  + +++ +  +    L     S  +    + +      + 
Sbjct: 916  GLSNDVYFQIGLITIIGLSSKNAILIIEFAKD---LQAEGKSVMESALGAAHLRFRPIIM 972

Query: 775  TSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS A  + VLP+ +  G+      +    +  G++     ++       L +  +   + 
Sbjct: 973  TSTAFTLGVLPLFLSTGASSASQRAIGTGVIGGMLTGTVLAVIFVPAFFLLVRTFFKGSQ 1032

Query: 832  R 832
            R
Sbjct: 1033 R 1033


>gi|187931932|ref|YP_001891917.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712841|gb|ACD31138.1| preprotein translocase, subunit D, membrane protein [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 645

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 280/542 (51%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D    ++  L      + S
Sbjct: 107 YIIAMNMLSNSP--NWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILS 164

Query: 80  FLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
             K   I + S  +                  ++++ A+S   + +   ++         
Sbjct: 165 AAKDNSINISSSTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLST-------D 217

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 218 FIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G      
Sbjct: 278 DNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNGRGYQSY 337

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 338 YSLKGTAVAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 397

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 398 TTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 457

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ +N+IL 
Sbjct: 458 VPVHIVQEQQIGPSLGKDNIGKGMLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILI 517

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 518 VAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 577

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 578 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKK 637

Query: 521 KS 522
             
Sbjct: 638 LE 639



 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  +I  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIILALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|322379137|ref|ZP_08053534.1| preprotein translocase subunit SecF [Helicobacter suis HS1]
 gi|322380433|ref|ZP_08054635.1| preprotein translocase subunit SecF [Helicobacter suis HS5]
 gi|321147144|gb|EFX41842.1| preprotein translocase subunit SecF [Helicobacter suis HS5]
 gi|321148433|gb|EFX42936.1| preprotein translocase subunit SecF [Helicobacter suis HS1]
          Length = 321

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/294 (28%), Positives = 153/294 (52%), Gaps = 5/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FM    WG+G S +  +  + L+   G N G+DF GG    V   +   
Sbjct: 1   MELFKRVRILNFMEYSKWGLGASCVVLLLCLALIIFKGFNLGVDFAGGSVAQVRFEKKAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +R       +  +    F  ++  ++++     +       +  +   +        
Sbjct: 61  LAQIREVFAKAHLNGVQVSAFGSDQEVVIKIPVGKQEIKDLGSQITEILAPL----GKFE 116

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGPK+  EL ++GI+ ++++ +AM++Y+  R++W FAL +I  L+ D   T   
Sbjct: 117 IRKLDSVGPKVGDELKQRGILSLVLAIVAMMLYVSFRYEWRFALASILALVHDSLITATS 176

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AAVLTLIGYS+ND ++++DR+R+ M L   S     +I+++I+ TL 
Sbjct: 177 AIVFNIDLNLEVIAAVLTLIGYSINDTIIIFDRIREKM-LAGRSNDLNFVINEAISSTLT 235

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R++ TS+  F  +L + ++G  ++  F++PM  G VV   SSIF+A  I + + 
Sbjct: 236 RTLLTSLTVFFVLLVLYLFGSRILIGFSLPMLIGTVVGTYSSIFLAPRIAVLLG 289


>gi|299139296|ref|ZP_07032471.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598565|gb|EFI54728.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX8]
          Length = 1076

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 76/564 (13%), Positives = 144/564 (25%), Gaps = 42/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    +++  +   +GL+  +          +FP  +P               +++   
Sbjct: 7   RHPIVAIVIAILTVILGLVTMV-----SLPTSQFPDIVPPE-------------ILVTAT 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQNKIT---LSFADSRFKENIADKVT 116
                   L       +   +     +         N +    + F              
Sbjct: 49  YPGADAKTLTQAVSTPIEQQMNGVDNMIYMDSVSANNGVVQLFVDFDVKTDPNIDQVLAQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           L +    S+L        L         ++L   N           +   I    DQI  
Sbjct: 109 LRVDQAQSQLPAQVTTAGLTVQKALTSPLMLVAVNSPGGKLSQDFLTNYAIINLQDQITR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +              Q P +L QL  T  ++       NN       G   +   
Sbjct: 169 VKGVSRVQTFGGQYALRVWVQ-PDKLAQLGVTAPEVIAAIQTQNNVNPAGQIGAEPIPKG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y V  +  +                 +    I                 I      
Sbjct: 228 QQFTYTVRTQGRL-------------VTPEEFGDIILRANADGSILHLKDVARIELGDQA 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +   T          L A         V      A  
Sbjct: 275 YGISGRYNQAPSGIMAIYQLPGSNAVQTAAAVNQRMKELSATFPAGISYDVPLDTTKAVT 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                   T      LV+IV+F+ +   +  L+   ++ +++I T  +   LG ++   S
Sbjct: 335 AGIHEIVITLLEALALVVIVVFIFLQGWRATLIPLLAVPVSLIGTFIIFPALGFSINTLS 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IGL VD  I+V E +     +      + +         +    +      + 
Sbjct: 395 LFGLVLAIGLVVDDAIIVVEAVEHHIDEGLDPVAATEKAMEEVGGPVVAIALILAAVFIP 454

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             F     G   + FA+T+ +S+LIS F A+    +  +  +  K          +    
Sbjct: 455 TAFIPGITGRLYQQFAVTIAISVLISAFNAL--TLSPALSALLLKPKDKNATKKPNLLNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFS 557
                   F R     V  S +  
Sbjct: 513 GFALFNKFFGRTTDSFVSTSNILI 536



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 84/225 (37%), Gaps = 7/225 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q   IS +        +   Q    ++V     +    K+++   P     
Sbjct: 264 DVARIELGDQAYGISGRYNQAPSGIMAIYQLPGSNAVQTAAAVNQRMKELSATFPAGISY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +  +   K     I + ++ ++ +   ++I ++I  + W   L  +  + + +  T   F
Sbjct: 324 DVPLDTTKAVTAGIHEIVITLLEALALVVIVVFIFLQGWRATLIPLLAVPVSLIGTFIIF 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N  ++  ++  IG  V+D ++V + +          +      +K++ E  G 
Sbjct: 384 PALGFSINTLSLFGLVLAIGLVVDDAIIVVEAV---EHHIDEGLDPVAATEKAMEEVGGP 440

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
            V  ++      +P A   G        FA+ +A  ++++A +++
Sbjct: 441 VVAIALILAAVFIPTAFIPGITGRLYQQFAVTIAISVLISAFNAL 485



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/226 (12%), Positives = 72/226 (31%), Gaps = 14/226 (6%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             ++ +   +  ++  +     +         S    + LE    K               
Sbjct: 807  TVKQITGPEFIYRFNEFNAAQINITGAPGYSSGQIRKALEDTFAKTMPAGSGYDYSGMSY 866

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG- 715
               +  + +    +  + +  +  LI   +   W         L+      LG +     
Sbjct: 867  QEQQAEKGVPSWAVFALSLLFVF-LILAALYSSWTLPFSV---LLSTPVAILGAYIALHA 922

Query: 716  --IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
              +E ++ A   ++ LIG S  + +++ +  + N   Y   +S  +    +        V
Sbjct: 923  RLLENDIFATIGLVMLIGLSAKNAILIVEFAKTN---YEAGLSISEAALAAARVRFRPIV 979

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA-SSSIFI 815
             T++A  +  LP+      G +        +  G++++     IFI
Sbjct: 980  MTALAFIVGCLPLWTATGAGAASRQILGTVVVGGMLLSTGLGLIFI 1025


>gi|153839001|ref|ZP_01991668.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Vibrio parahaemolyticus AQ3810]
 gi|149747545|gb|EDM58481.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Vibrio parahaemolyticus AQ3810]
          Length = 1046

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/687 (10%), Positives = 186/687 (27%), Gaps = 36/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++   +  +G++      L    +  +P   P                +     
Sbjct: 9   RPKFALVISLAMTLMGMIA-----LKVLPISEYPQISPTVIT---------VSTMYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++        +    +  + + F      +    +V   +  
Sbjct: 55  ADVVKKTVAQPIEAKVNGVEDMIYMSSVIGNDGSYTLRIYFRVGADGDMAQVRVNNLVAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  +  +    +    + +      +    +I  S       ++++   E   
Sbjct: 115 ATSSLPQEVNQIGVTVKKKSSDMLGVITLRSPKQSYDSIYLSNYADLNIVERLKRIEGMS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    +P++L  L  + + +       N        G          QY
Sbjct: 175 DITLLGKKDYSMRIWLNPNKLATLKLSASDVIGAIKTQNIQVAAGKIGGMPAPGDQQYQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++ K  ++                +    I                 +           
Sbjct: 235 VLQTKGRLTSAE-------------EFENIIIRASKKGSLIRLKDVARVEVGAQGYEADG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +    +E                 +  +   +      S   
Sbjct: 282 RMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVYDIAYDSTEYVETSIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV  V+++ +   +  ++   +I +++I T A++ ++G T+   S+ G++
Sbjct: 342 VYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIMGVMGMTINTISLFGLI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +       +           +  + +  L   V +   
Sbjct: 402 LAIGIVVDDAIIVVENVERVIHEEHLDPIPATIQAMKEVTGPVLATTLILLAVFVPVALL 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFL 533
            G + R    FA+T+ +S+LIS   A+++  A+   +               N       
Sbjct: 462 PGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLKSTHSQPIAPLRAFNRGFEAIT 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 + F+  R           I  +   F    +  +  +      V    P   ++
Sbjct: 522 RKYQGLVGFLSRRIVLSIGVYGALIAVLAFAFMTVPSSFVPNEDKGVFMVEMRLPDAAAL 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            R+     +  D   Q    E    V        +      + ++K           +  
Sbjct: 582 QRTAPLMKKYVDELKQMEGVENVVSVAGFSVINMASIPNSGMLIIKLDNWSKRKDPELHQ 641

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAM 680
             ++                + +  A+
Sbjct: 642 RALMNKVNQMLNSTPDAASFVFATPAI 668



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  +   +  +     L   Q    +++     ++   K+  +  P   + 
Sbjct: 266 DVARVEVGAQGYEADGRMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +      +     I +    ++I+ + +   +++  + W   +     + + I  T    
Sbjct: 326 DIAYDSTEYVETSIDEVYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G+  N  ++  ++  IG  V+D ++V + +     ++   +       +++ E  G 
Sbjct: 386 GVMGMTINTISLFGLILAIGIVVDDAIIVVENV--ERVIHEEHLDPIPATIQAMKEVTGP 443

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + T++      +P+A+  G        FA+ +   ++++A +++ +   +   +  
Sbjct: 444 VLATTLILLAVFVPVALLPGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLK 500



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 77/279 (27%), Gaps = 10/279 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                  +                    ++  +        ++ +   D            
Sbjct: 763  RSYQVKVQAEEQYRDNIDDIDHLFVRSSSGKMVSLATLVKVKPIFGPDTLSNYNMFSSAT 822

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +         S    + +E +  +                  K          +   +S 
Sbjct: 823  VNGAPAPGYSSGDVVKAIEKLAAESLPSGYSYEWSGMTYQEMKAGNM----APIAFALSL 878

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +   +++  +++ W      +  + + I   +G   L G  F+L     V+ LIG S   
Sbjct: 879  LFTYLFLVAQYESWTIPAAVMMAVPVAILGAMGTLLLVGQPFDLYVQIGVVILIGMSAKV 938

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ +  +  +      +S  D   ++          T+ A    V P+ +    G + 
Sbjct: 939  AILIVEFAK--VLREEKGLSIIDAAKEAARIRFRAVQMTAFAFIWGVFPLVIASGAGAAS 996

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              S    +  G++++      +     + +   R K  R
Sbjct: 997  RHSLGFAVFGGMILSTFVGTLLTPVFFVMMQSLREKFKR 1035


>gi|300313893|ref|YP_003777985.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
 gi|300076678|gb|ADJ66077.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1051

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/628 (10%), Positives = 181/628 (28%), Gaps = 44/628 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++           L+++P   P                      
Sbjct: 8   RPIFAWVIAIIIMLGGMMSI-----RSLSLEQYPDIAPPKV---------NIKATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    L     +   S       ++L+F      +    +V   LQ 
Sbjct: 54  AKTLEDSVTQVIEQQMKGLDNLQYMSASSSSAGSATVSLTFTAGTNPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    + N +  T      +++     D     +I+    I     DQI   E   
Sbjct: 114 VTARLPQAVQNNGVTVTKASTDILMVLSLTSDDPRITSIDIGDFISSTLTDQISRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L++     + ++      N        G    +       
Sbjct: 174 DVTAFGT-NYAMRIWIDPAKLQKYALMPSDITSALQAQNTEVSAGEIGALPAQPGQQINA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++                +    I    +            +           
Sbjct: 233 TITARSKLT-------------TPDEFRNIIVKSSVDGSVVKLSDVARVELGGESYQVAS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL--PIKLNIVEERNVGADLGSD 359
                  +          +   T +      A L             +          S 
Sbjct: 280 QQNGKPSSALAIQLATGANALATADAVKKKLAELEPYFPASMKLKTNIAYDTTPFVRVSL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++++++ +   +   +   ++ + ++ T  +L++ G ++   ++ G
Sbjct: 340 EEVVKTLIEAIVLVVLIMYLFLQNIRATFIPAITVPVVLLGTFGILAMFGYSINTLTMFG 399

Query: 420 IVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IGL VD  I+V E +    + +  S   +           +    +      + + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERLMSEEKLSPKEATRKSMQEITGALVGIAMVLSAVFIPMA 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDIN 526
           FFGG      R F+IT+  ++ +S+  A+++  A+   +          + +     + +
Sbjct: 460 FFGGSTGVIYRQFSITIVSAMALSVMVALTLTPALCATLLKPHAGGHVQQGRFFTWFNRS 519

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +A    R +   +  +++    ++  +         + +G +   +   
Sbjct: 520 FDRSATRYQGGVAGLLKRGKRGLLMYALIAVAMAVLFMRLPTSFLPEEDQGVLMAQIQLP 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGE 614
                    + ++++Q   ++       
Sbjct: 580 TGATAEQTATVVKTVQEYFMNKPESVES 607



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 88/247 (35%), Gaps = 8/247 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + +       +      ++     E+   V      G+  A       + +    +  L 
Sbjct: 791  NAASQMVPFAAFMSSQWTYGPSLLERYNGVSSFEIVGEPAAGVSSGTAMAEVEKLVAQLP 850

Query: 650  TIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                 E  G      L   +  +   IS + + + +   ++ W      I  + L I  T
Sbjct: 851  AGIGFEWTGSSYQERLSGNQAPMLYAISILFVFLCLAALYESWSVPFAVILAVPLGIIGT 910

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            +    +FG+  ++     +LT +G S  + +++ +  +   +L+ +  S  +   +++  
Sbjct: 911  VLLTGIFGMSNDVYFQVGLLTTVGLSAKNAILIVEFAK---QLHESGKSLWEATLEAVQL 967

Query: 768  TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + TS+A    VLP+AV    G +   +    +  G++ A    IF        I 
Sbjct: 968  RLRPILMTSLAFMFGVLPLAVASGAGSASRRAIGTGVLGGMLSATLLGIFFVPLFYYLIG 1027

Query: 825  DWRAKNA 831
             W  + A
Sbjct: 1028 AWLDRRA 1034



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 87/240 (36%), Gaps = 7/240 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R  L        S QN        ++L            V + + +          
Sbjct: 263 SDVARVELGGESYQVASQQNGKPSSALAIQLATGANALATADAVKKKLAELEPYFPASMK 322

Query: 651 IQNTEIVGPKISREL-IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
           ++            + + + +  +I + + +++ +++  +          T+ + +  T 
Sbjct: 323 LKTNIAYDTTPFVRVSLEEVVKTLIEAIVLVVLIMYLFLQNIRATFIPAITVPVVLLGTF 382

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G  A+FG   N   +  ++  IG  V+D +VV + +     +    +S ++   KS+ E 
Sbjct: 383 GILAMFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERLMSEEKLSPKEATRKSMQEI 440

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   +  
Sbjct: 441 TGALVGIAMVLSAVFIPMAFFGGSTGVIYRQFSITIVSAMALSVMVALTLTPALCATLLK 500


>gi|288936666|ref|YP_003440725.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
 gi|288891375|gb|ADC59693.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
          Length = 1030

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/614 (10%), Positives = 168/614 (27%), Gaps = 45/614 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  ++  +G +      L    ++++P+  P               + +   
Sbjct: 7   RRPRFAMVIALLLTFVGAVS-----LKLIPVEQYPAITPPV-------------VNVSAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   + +  +  L + L           +       +++++FA     +  A  V 
Sbjct: 49  WPGASASDVAEAIAAPLETQLNGVDHMLYMESTSSDEGTYRLSITFAAGTDADLAAIDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    ++L  + ++N +         ++             +  S     Q  + +  
Sbjct: 109 NRVAQALAQLPAEVQQNGVQVRKRASNLLMGVSLYSPLGTLSPLFVSNYASTQVREALAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +     P R+  L  TT  ++      N        G   + + 
Sbjct: 169 LPGVGEVQMFGARDYSMRIWLRPDRMNALNITTDDVAQALREQNVQGAAGQVGTPPVFNG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     +              +       I       +         I      
Sbjct: 229 QQQTLTINGLGRL-------------NEAASFGEIILRRGAQGQLVRLADVATIELGARS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G  L                +              L           V+        
Sbjct: 276 YSSGAQLNGKASAYLGIYPTPTANALQVASAVRAELNRLHTRFPADLTWEVKFDTTRFVA 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      + A+    V++V+ + +   +  L+   +I +++I T A+L LLG +    S
Sbjct: 336 ATIKEIGVSLALTLLAVVVVVSLFLQSWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  I+L + + VD  I+V E +  +  +      +      +    +  + +  L   V 
Sbjct: 396 LFAIILALTMVVDDAIVVVENVETKMAEGLDRLQATAQALQQIAGPVIATTLVLLAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINP 527
           +       G   R FA+T+  ++ +S   A+++  A+   ++R +        ++ +   
Sbjct: 456 VALLPGIVGELYRQFAVTLSTAVALSSLVALTLTPALCALLLRPRPARPAAVWRAFNRLL 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R            ++ +             + +G +   V    
Sbjct: 516 DGTRDGYGRLVGWMNRRPWLALAATVAAGALVAFSFTSMPKGFLPQEDQGYLFASVQLPE 575

Query: 588 PVDLSVVRSNLESL 601
              L    + +   
Sbjct: 576 AASLERTEAVMAQA 589



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T     L G   N  ++ A++  +   V+D +VV + +    
Sbjct: 362 SWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLSLFAIILALTMVVDDAIVVVENV---E 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
                 +       +++ +  G  + T++      +P+A+     G +   FA+ ++  +
Sbjct: 419 TKMAEGLDRLQATAQALQQIAGPVIATTLVLLAVFVPVALLPGIVGELYRQFAVTLSTAV 478

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNARI 833
            +++  ++ +   +  L +    A+ A +
Sbjct: 479 ALSSLVALTLTPALCALLLRPRPARPAAV 507



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/434 (10%), Positives = 113/434 (26%), Gaps = 19/434 (4%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
                     I +     ++     N        K+      LD   +     +       
Sbjct: 594  MANPAVEDVIQVSGFNILNGTSASNGGFISVMLKDWHQRPPLDAVMADIQRQLLSLPEAT 653

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            ++        G G   GF + +      S      + R ++    ++ ++  +     S 
Sbjct: 654  IMTFAPPTLPGLGNASGFDLRILAQAGQSSAELEQVTREILQLANQHPQLSRVFTTWSSN 713

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSIC---------LLFTHGLNYGIDFKGGIQL 581
               +   +           V         +               + +    + +   + 
Sbjct: 714  VPQLTLTVDRDRAALLDVPVAQIFSSLQTAFGGTRAGDFSRNNRVYHVVMQNEMQWRERA 773

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              ++   V          S  +           + +          S A+          
Sbjct: 774  EQISELYVRSRDGERVRLSNLVTITPTVGAPFIQQYNQFPSVSVSGSAAEGVSSRTAMAA 833

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM----LIYIWIRFKWYFALGAI 697
            + +I+        +     IS +  + G   V I   A+    L  +     W      +
Sbjct: 834  MEQILQAHLPPGYDYAWSGISWQEQQTGNQAVWIVLAAVAMAWLFLVAQYESWTLPASVM 893

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +++  I   L +    G   ++     ++ LI  +  + +++ +  R         +S 
Sbjct: 894  LSVLFAIGGALLWLWTAGYANDVYVQIGLVLLIALAAKNAILIVEFAR---SRREEGLSI 950

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             D   +         + T+++  I ++PM +    G          +  G++VA    I 
Sbjct: 951  VDAAREGATRRFRAVMMTAVSFIIGIMPMMLATGAGAQSRRIIGTTVFSGMLVATMIGIL 1010

Query: 815  IAAPILLFIYDWRA 828
                + +     R 
Sbjct: 1011 FIPSLYVLFQRMRE 1024


>gi|206577877|ref|YP_002239828.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella pneumoniae 342]
 gi|290510282|ref|ZP_06549652.1| hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter
           [Klebsiella sp. 1_1_55]
 gi|206566935|gb|ACI08711.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella pneumoniae 342]
 gi|289776998|gb|EFD84996.1| hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter
           [Klebsiella sp. 1_1_55]
          Length = 1030

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/614 (10%), Positives = 168/614 (27%), Gaps = 45/614 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  ++  +G +      L    ++++P+  P               + +   
Sbjct: 7   RRPRFAMVIALLLTFVGAVS-----LKLIPVEQYPAITPPV-------------VNVSAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   + +  +  L + L           +       +++++FA     +  A  V 
Sbjct: 49  WPGASASDVAEAIAAPLETQLNGVDHMLYMESTSSDEGTYRLSITFAAGTDADLAAIDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    ++L  + ++N +         ++             +  S     Q  + +  
Sbjct: 109 NRVAQALAQLPAEVQQNGVQVRKRASNLLMGVSLYSPLGTLSPLFVSNYASTQVREALAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +     P R+  L  TT  ++      N        G   + + 
Sbjct: 169 LPGVGEVQMFGARDYSMRIWLRPDRMNALNITTDDVAQALREQNVQGAAGQVGTPPVFNG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     +              +       I       +         I      
Sbjct: 229 QQQTLTINGLGRL-------------NEAASFGEIILRRGAQGQLVRLADVATIELGARS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G  L                +              L           V+        
Sbjct: 276 YSSGAQLNGKASAYLGIYPTPTANALQVASAVRAELNRLHTRFPADLTWEVKFDTTRFVA 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      + A+    V++V+ + +   +  L+   +I +++I T A+L LLG +    S
Sbjct: 336 ATIKEIGVSLALTLLAVVVVVSLFLQSWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  I+L + + VD  I+V E +  +  +      +      +    +  + +  L   V 
Sbjct: 396 LFAIILALTMVVDDAIVVVENVETKMAEGLDRLQATAQALQQIAGPVIATTLVLLAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINP 527
           +       G   R FA+T+  ++ +S   A+++  A+   ++R +        ++ +   
Sbjct: 456 VALLPGIVGELYRQFAVTLSTAVALSSLVALTLTPALCALLLRPRPARPAAVWRAFNRLL 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R            ++ +             + +G +   V    
Sbjct: 516 DGTRDGYGRLVGWMNRRPWLALAATVAAGALVAFSFTSMPKGFLPQEDQGYLFASVQLPE 575

Query: 588 PVDLSVVRSNLESL 601
              L    + +   
Sbjct: 576 AASLERTEAVMAQA 589



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T     L G   N  ++ A++  +   V+D +VV + +    
Sbjct: 362 SWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLSLFAIILALTMVVDDAIVVVENV---E 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
                 +       +++ +  G  + T++      +P+A+     G +   FA+ ++  +
Sbjct: 419 TKMAEGLDRLQATAQALQQIAGPVIATTLVLLAVFVPVALLPGIVGELYRQFAVTLSTAV 478

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNARI 833
            +++  ++ +   +  L +    A+ A +
Sbjct: 479 ALSSLVALTLTPALCALLLRPRPARPAAV 507



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/434 (10%), Positives = 113/434 (26%), Gaps = 19/434 (4%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
                     I +     ++     N        K+      LD   +     +       
Sbjct: 594  MANPAVEDVIQVSGFNILNGTSASNGGFISVMLKDWHQRPPLDAVMADIQRQLLSLPEAT 653

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            ++        G G   GF + +      S      + R ++    ++ ++  +     S 
Sbjct: 654  IMTFAPPTLPGLGNASGFDLRILAQAGQSSAELEQVTRQILQLANQHPQLSRVFTTWSSN 713

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSIC---------LLFTHGLNYGIDFKGGIQL 581
               +   +           V         +               + +    + +   + 
Sbjct: 714  VPQLTLTVDRDRAALLDVPVAQIFSSLQTAFGGTRAGDFSRNNRVYHVVMQNEMQWRERA 773

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              ++   V          S  +           + +          S A+          
Sbjct: 774  EQISELYVRSRDGERVRLSNLVTITPTVGAPFIQQYNQFPSVSVSGSAAEGVSSRTAMAA 833

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM----LIYIWIRFKWYFALGAI 697
            + +I+        +     IS +  + G   V I   A+    L  +     W      +
Sbjct: 834  MEQILQAHLPPGYDYAWSGISWQEQQTGNQAVWIVLAAVAMAWLFLVAQYESWTLPASVM 893

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +++  I   L +    G   ++     ++ LI  +  + +++ +  R         +S 
Sbjct: 894  LSVLFAIGGALLWLWTAGYANDVYVQIGLVLLIALAAKNAILIVEFAR---SRREEGLSI 950

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             D   +         + T+++  I ++PM +    G          +  G++VA    I 
Sbjct: 951  VDAAREGATRRFRAVMMTAVSFIIGIMPMMLATGAGAQSRRIIGTTVFSGMLVATMIGIL 1010

Query: 815  IAAPILLFIYDWRA 828
                + +     R 
Sbjct: 1011 FIPSLYVLFQRMRE 1024


>gi|190575060|ref|YP_001972905.1| putative multidrug resistance efflux pump [Stenotrophomonas
           maltophilia K279a]
 gi|190012982|emb|CAQ46614.1| putative multidrug resistance efflux pump [Stenotrophomonas
           maltophilia K279a]
          Length = 1057

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/547 (10%), Positives = 144/547 (26%), Gaps = 41/547 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +     
Sbjct: 9   PVFAWVVAILISLSGVIAIL-----NLGVESYPNIAPP-------------QVTVSATYP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    + +ITL+F      +    +V   
Sbjct: 51  GASADTTEKSVTQVIEQQLTGIDHLLYFSSSSSSNGRAQITLTFETGTDPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        +++     D    +    +  +  + +DQ+    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVVALQSDTPTINRDALNDIVGSRVLDQVSRIP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +++    + +++       N        G     +   
Sbjct: 171 GVGSTQQFGS-EYAMNIWLNPEKMQGYGLSASQVLAAVRAQNVQFAAGALGSDPSPEGQH 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I        R        +        
Sbjct: 230 FTATVSAEGRFS-------------SPQEFENIILRANADGSRVLLKDIARVAFGANNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E        L+              +      S
Sbjct: 277 FDTQYNGKPTGAFAIQLLPGANALNVAEAVRAKMDELQPSFPAGVTWFSPYDSTTFVKIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  L+    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IQEVVKTLFEAVFLVFLVMLIFLQNFRATLIPTLVIPVALLGTFLGMWMIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IG+ VD  I+V E +      +  +   +     ++    +    +      +  
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMTEEGLAPKPATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
              G   G   + FA+T+ +S+  S F A+    A+    ++     + +I   +     
Sbjct: 457 ALQGGAAGEIYKQFALTIAISMAFSAFLALGFTPALCATFLKPTHNDNPNIVYRTFNKYY 516

Query: 535 PDCIAIQ 541
                  
Sbjct: 517 DKISHTY 523



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 77/237 (32%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  +              Q                 +++     +     ++    
Sbjct: 258 SRVLLKDIARVAFGANNYGFDTQYNGKPTGAFAIQLLPGANALNVAEAVRAKMDELQPSF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      +        +  I++ +  +  +   + + + I  + +   L     + + + 
Sbjct: 318 PAGVTWFSPYDSTTFVKISIQEVVKTLFEAVFLVFLVMLIFLQNFRATLIPTLVIPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     + G   N   + A++  IG  V+D +VV + +     +    ++ +    K++
Sbjct: 378 GTFLGMWMIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERIMTEEGLAPKPATQKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P A+ G   G +   FA+ +A  +  +A  ++     +
Sbjct: 436 TQITGAVVAITVVLAAVFIPSALQGGAAGEIYKQFALTIAISMAFSAFLALGFTPAL 492



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             LG   L G+  +L     ++T+IG +  + +++ +   +         + RD   ++  
Sbjct: 911  ALGLSMLRGLPNDLFFKIGLITVIGLAAKNAILIVEFAVEQRAA---GKNLRDATIEAAR 967

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + TS A  + V+PMA+    G +   +    +  G++ A    + +     + +
Sbjct: 968  LRFRPILMTSFAFIMGVIPMAISTGAGANSRHAIGTGVIGGMLFATLLGLLMIPVFFVVV 1027

Query: 824  YD 825
              
Sbjct: 1028 RR 1029


>gi|328470283|gb|EGF41194.1| putative multidrug efflux membrane fusion protein [Vibrio
           parahaemolyticus 10329]
          Length = 1046

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 72/687 (10%), Positives = 186/687 (27%), Gaps = 36/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++   +  +G++      L    +  +P   P                +     
Sbjct: 9   RPKFALVISLAMTLMGMIA-----LKVLPISEYPQISPTVIT---------VSTMYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++        +    +  + + F      +    +V   +  
Sbjct: 55  ADVVKKTVAQPIEAKVNGVEDMIYMSSVIGNDGSYTLRIYFRVGADGDMAQVRVNNLVAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  +  +    +    + +      +    +I  S       ++++   E   
Sbjct: 115 ATSSLPQEVNQIGVTVKKKSSDMLGVITLRSPKQSYDSIYLSNYADLNIVERLKRIEGMS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    +P++L  L  + + +       N        G          QY
Sbjct: 175 DITLLGKKDYSMRIWLNPNKLATLKLSASDVIGAIKTQNIQVAAGKIGGMPAPGDQQYQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++ K  ++                +    I                 +           
Sbjct: 235 VLQTKGRLTSAE-------------EFENIIIRASKKGSLIRLKDVARVEVGAQGYEADG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +    +E                 +  +   +      S   
Sbjct: 282 RMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVYDIAYDSTEYVETSIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV  V+++ +   +  ++   +I +++I T A++ ++G T+   S+ G++
Sbjct: 342 VYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIMGVMGMTINTISLFGLI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +       +           +  + +  L   V +   
Sbjct: 402 LAIGIVVDDAIIVVENVERVIHEEHLDPIPATIQAMKEVTGPVLATTLILLAVFVPVALL 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFL 533
            G + R    FA+T+ +S+LIS   A+++  A+   +               N       
Sbjct: 462 PGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLKSTHSQPIAPLRAFNRGFEAIT 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 + F+  R           I  +   F    +  +  +      V    P   ++
Sbjct: 522 RKYQGLVGFLSRRIVLSIGVYGALIAVLAFAFMTVPSSFVPNEDKGVFMVEMRLPDAAAL 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            R+     +  D   Q    E    V        +      + ++K           +  
Sbjct: 582 QRTAPLMKKYVDELKQMEGVENVVSVAGFSVINMASIPNSGMLIIKLDNWSKRKDPELHQ 641

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAM 680
             ++                + +  A+
Sbjct: 642 RALMNKVNQMLNSTPDAASFVFATPAI 668



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  +   +  +     L   Q    +++     ++   K+  +  P   + 
Sbjct: 266 DVARVEVGAQGYEADGRMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +      +     I +    ++I+ + +   +++  + W   +     + + I  T    
Sbjct: 326 DIAYDSTEYVETSIDEVYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G+  N  ++  ++  IG  V+D ++V + +     ++   +       +++ E  G 
Sbjct: 386 GVMGMTINTISLFGLILAIGIVVDDAIIVVENV--ERVIHEEHLDPIPATIQAMKEVTGP 443

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + T++      +P+A+  G        FA+ +   ++++A +++ +   +   +  
Sbjct: 444 VLATTLILLAVFVPVALLPGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLK 500



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 75/279 (26%), Gaps = 10/279 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                  +                    ++  +        ++ +   D            
Sbjct: 763  RSYQVKVQAEEQYRDNIDDIDHLFVRSSSGKMVSLATLVKVKPIFGPDTLSNYNMFSSAT 822

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +         S      +E +  +                  K          +   +S 
Sbjct: 823  VNGAPAPGYSSGDVVNAIEKLAAESLPSGYSYEWSGMTYQEMKAGNM----APIAFALSL 878

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +   +++  +++ W      +  + + I   +G   L G  F+L     V+ LIG S   
Sbjct: 879  LFTYLFLVAQYESWTIPAAVMMAVPVAILGAMGTLLLVGQPFDLYVQIGVVILIGMSAKV 938

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ +  +  +      +S  D   ++          T+ A    V P+ +    G   
Sbjct: 939  AILIVEFAK--VLREEKGLSIIDAAKEAARIRFRAVQMTAFAFIWGVFPLVIASGAGAES 996

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              S    +  G++++      +     + +   R K  R
Sbjct: 997  RHSLGFAVFGGMILSTFVGTLLTPVFFVMMQSLREKFKR 1035


>gi|239994873|ref|ZP_04715397.1| acriflavine resistance protein B [Alteromonas macleodii ATCC 27126]
          Length = 1032

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/684 (10%), Positives = 171/684 (25%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G+L           ++++P   P +                    
Sbjct: 8   RPVFAWVLAIITMMAGVLAI-----TSLPIEQYPKVAPPSVT---------ISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++  + +        S       ITL+F      +    +    +QG 
Sbjct: 54  AETVENSVTQVIEQSLTGIDNLRYFSASSSNSSMSITLTFEPGADPDIAQVQTQNKVQGA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    ++  +  T       +      +       + S  ++ Q  D I        
Sbjct: 114 LPLLPTQVQQQGVTVTKANSAFALAVGFYSEDDSMTQYDLSDLLVSQFRDPISRVNGVGN 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                          DP +L     T   +     + N        G     ++      
Sbjct: 174 VRVFGAQRSM-RIWLDPDKLYSYNLTPTDVQGAVQVQNTDVSAGQLGGMPAIENQQINAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++ +  +                      +        +        +            
Sbjct: 233 IQAQSRL-------------QTVEDFENIVLRVNTDGSQVRVRDVARVELGAQSYDVIVR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                 +    S  +  +   TI+        LR+        +    +      S    
Sbjct: 280 YDRKPASGMAISLASGANALDTIKAVKARVEELRSNLPDTVKVVYPVDSSPFIELSIESV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+ + +   +  L+   ++ + ++ T A+L   G ++ + ++  +VL
Sbjct: 340 VHTLIEAVVLVFLVMLLFLQNWRATLIPTIAVPVVLLGTFAVLLAFGFSINVLTMFAMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLF 478
            IGL VD  I+V E +      +  S   +     ++       I     T  I      
Sbjct: 400 AIGLLVDDAIVVVENVERIMEEEGLSPAEATKKSMTQITGALVGIAAVLSTVFIPMAFFS 459

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R F++T+  ++  S+  AI +  ++   +                  +     
Sbjct: 460 GSAGAIYRQFSVTIVSAMAFSVLVAIVLSPSLCATLLKKHPENHDKNKGFFGWFNRTFNK 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                         R + + V   +L    +       G     + +G + + V      
Sbjct: 520 GRDRYQKTTTHMAQRFKRYFVVYGLLVGGMAFIFSQLPGAFLPDEDQGRMMVLVSTPPGA 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                  +++ ++   +  +       F V      G +                    S
Sbjct: 580 TAGRTLESIKQVEDYILEQEQDAVNGMFAVVGFSFAGQAQNAGMAFLNFNDWSVRDENNS 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
                       S+         V
Sbjct: 640 AFAVMNRAFGAFSQIQDASAFPIV 663



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 58/147 (39%), Gaps = 11/147 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRK 746
           W   L     + + +  T      FG   N+  + A++  IG  V+D +VV    +R+ +
Sbjct: 361 WRATLIPTIAVPVVLLGTFAVLLAFGFSINVLTMFAMVLAIGLLVDDAIVVVENVERIME 420

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAF 803
                   +S  +   KS+ +  G  V  +       +PMA + GS   +   F++ +  
Sbjct: 421 E-----EGLSPAEATKKSMTQITGALVGIAAVLSTVFIPMAFFSGSAGAIYRQFSVTIVS 475

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKN 830
            +  +   +I ++  +   +     +N
Sbjct: 476 AMAFSVLVAIVLSPSLCATLLKKHPEN 502



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 81/268 (30%), Gaps = 11/268 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      +       V  +   +         +   N     N           
Sbjct: 773  PHRMTPEDLDKWFVRNSDGEMVAFNTFSTTEWVYGSPKLERFNGVSSVNIQGSAAEGISS 832

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++         +  + E         +    +  + I  I  L    + 
Sbjct: 833  GEAMAEMQKLVEQLPPGFAIEWSGLSYEEQEAGSQAPM----LYALSI-LIVFLCLAALY 887

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L I  ++    +F +  ++    A LT +G +  + +++ +  ++ 
Sbjct: 888  ESWSVPFAVMLVVPLGILGSVTAAFIFNLPNDVYLQVAFLTTVGLAAKNAILIVEFAKE- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFG 804
               Y         +  + ++     + TSMA  + V P+A+  G+   S     I +  G
Sbjct: 947  --QYENGEDLMTAVSNAASQRFRPILMTSMAFILGVTPLALASGAGAASQNAIGIAVMGG 1004

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +  A   +IF      + +     +  +
Sbjct: 1005 MFAATFLAIFFVPMFYVLVEKLFHREDK 1032


>gi|218677221|ref|YP_002396040.1| putative protein-export membrane protein SecF [Vibrio splendidus
           LGP32]
 gi|218325489|emb|CAV27663.1| putative protein-export membrane protein SecF [Vibrio splendidus
           LGP32]
          Length = 307

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 148/290 (51%), Gaps = 7/290 (2%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                    R R     ISI+  + S+ L+   G N+G+DF GG+   V  +  V    +
Sbjct: 6   MTISNSSMTRLRKVMSVISIVLFMSSVMLVAVKGFNWGLDFTGGVVAEVQLSDQVTKDAL 65

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++ L++    D+       +  + +R       S         +   ++ +     + N+
Sbjct: 66  KTKLDTAFQQDVQVVGMAEQDRWTIRY------SQLTDAPQPNLVDALSSVSDQVKVLNS 119

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
            +VGP++ ++++ +G + V++  + +++Y+ +RF+W  ALGA+  +I D+T  LG FA  
Sbjct: 120 SVVGPQVGQDMVDQGGLAVLVCFLMIMLYLSVRFEWRLALGALAAIIYDVTLILGLFAFT 179

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             EFNLT +AAVL ++GYS+ND +++ DR+R+ ++         +L+++S+  T  R++ 
Sbjct: 180 QFEFNLTVLAAVLAILGYSLNDSIIIADRVREMLRGNPNG-DTDNLLNESVKATFSRTMV 238

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           TS    I+V  + + GG+ +  FAI +  GIV    SSI +   +   + 
Sbjct: 239 TSGTTLITVSALWLLGGAALQGFAIALVVGIVSGTWSSISVGITLPKLLG 288


>gi|325972706|ref|YP_004248897.1| protein-export membrane protein SecF [Spirochaeta sp. Buddy]
 gi|324027944|gb|ADY14703.1| protein-export membrane protein SecF [Spirochaeta sp. Buddy]
          Length = 401

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 71/251 (28%), Positives = 133/251 (52%), Gaps = 1/251 (0%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L         +  VRS L SL    +     D  + F VR+  +   + A          
Sbjct: 143 LNFTGTGSTSIEDVRSALASLGNVKVQTVGSDENQTFQVRVGIKDNATQASMEDEVKKAL 202

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                   + +  ++ +GPK S  L+   I+ ++++   +L+Y+WIRF++ +A+ ++  L
Sbjct: 203 ASFFGEGNTVVLQSDYIGPKFSATLLSSSILAIVVAMALILVYVWIRFRFAYAVSSLIAL 262

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           + DI   L   ++  +EF+ T +AA+LT+IGYS+N+ +V++DR+R+N+ L   S      
Sbjct: 263 LHDILMMLTAISILRLEFSSTTIAALLTIIGYSLNNTIVIFDRVRENVMLN-KSAGLAKQ 321

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ID S+++++ R+V +++   +++LP+A++    I  FAI M FG+V    SS F+A  +L
Sbjct: 322 IDLSVSQSVSRTVMSAVTTLVAILPLAIFASGDIQLFAINMMFGLVFGTYSSNFLAPSML 381

Query: 821 LFIYDWRAKNA 831
            +I   + K  
Sbjct: 382 YWISKAQKKQN 392


>gi|330892059|gb|EGH24720.1| multidrug efflux transporter [Pseudomonas syringae pv. mori str.
           301020]
          Length = 633

 Score =  179 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/631 (10%), Positives = 160/631 (25%), Gaps = 50/631 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G+L  L        + ++P+  P                    + 
Sbjct: 8   RPIFAWVLAIVIMLVGVLSIL-----TLPIAQYPAIAPPAIAI-------------TANY 49

Query: 63  DDFVNGFLQMYSDELR----SFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L+    ++       L        +        ITL+F      +    +V  
Sbjct: 50  PGASAKTLEDTVTQIIEQKMKGLDGLSYMSATSESNGQLTITLTFEIGTLADTAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +  T      + +     +       + S  +     D I   
Sbjct: 110 KLSLATPLLPQAVQQQGITVTKSTTNFLNVLAFTSEDGNMSDSDLSDYVAANVQDAISRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E                   DP +L     T   +S      N        G    +   
Sbjct: 170 EGVGDTTLFGSQYSM-RVWLDPDKLTSFSLTPLDVSEAIQAQNAQVSAGQLGALPAQPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    +   +             +       
Sbjct: 229 QINATITAQTRL-------------RTAEEFEDILLRTQSDGSHVRLRDVSRLELGSESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +   T+       + L+                     
Sbjct: 276 NTVGRFNGKPAAGLAIKLASGANALDTVRAVDERLSELQKLFPSGMKVQKPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T  +LS  G T+   ++
Sbjct: 336 SIESVVHTLIEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLSAFGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     +   S   +     S+    +    +      V 
Sbjct: 396 FAVVLAIGLLVDDAIVVVENVERVMEEEHLSPKEATRKSMSQITGALVGVALVLAAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           + FF G      R  +I++  ++ +S+  A+ +  A+   +          R       +
Sbjct: 456 MAFFSGSIGVIYRQVSISIVAAMTLSVLVALVLTPALCATLLKPSQEHSQSRKGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        +     +   +     +L  +     +         + +G + + V 
Sbjct: 516 RFFDRGNNRYLSVVRHMLGKRWRYMAVYVVLLMLVIGGFIKLPVGFLPDEDQGTLFVLVQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                        ++ ++   +  Q    E 
Sbjct: 576 LPPGATYERTSEVIKQVEQHFLVEQKEAVEG 606



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 92/249 (36%), Gaps = 6/249 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  +   +        L        +++   R ++    ++ ++ 
Sbjct: 258 SHVRLRDVSRLELGSESYNTVGRFNGKPAAGLAIKLASGANALDTVRAVDERLSELQKLF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I   +  +I + + + + +++  + +   L     + + + 
Sbjct: 318 PSGMKVQKPYDTTPFVRISIESVVHTLIEAVVLVFLVMYLFLQNFRATLIPTIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  + FG   N   + AV+  IG  V+D +VV + +     +    +S ++   KS+
Sbjct: 378 GTFGVLSAFGFTINTLTMFAVVLAIGLLVDDAIVVVENV--ERVMEEEHLSPKEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  V  ++      +PMA + G   VI    +I +   + ++   ++ +   +   
Sbjct: 436 SQITGALVGVALVLAAVFVPMAFFSGSIGVIYRQVSISIVAAMTLSVLVALVLTPALCAT 495

Query: 823 IYDWRAKNA 831
           +     +++
Sbjct: 496 LLKPSQEHS 504


>gi|152970613|ref|YP_001335722.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|150955462|gb|ABR77492.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 1038

 Score =  179 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/568 (13%), Positives = 158/568 (27%), Gaps = 33/568 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GL        P+  + ++P   P   I           +      
Sbjct: 8   RPIFAWVIALFIVLTGLFSI-----PRLPVAQYPEVAPPGII---------ISVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + +N  +    +   S +        S        IT++F      +     +   ++ 
Sbjct: 54  PEVMNTSVVSLIEREISSVDNLLYFESSSDTTGMASITVTFKPGTDIKLAQMDLQNQIKI 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    ++N +         +++             + S    R   D++       
Sbjct: 114 VESRLPQSVRQNGINVEAANSGFLMMVGLKSPSGAYQEADLSDYFARNVTDELRRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP +L     +   +       N        G      S    Y
Sbjct: 174 KVQLFG-GEKALRIWLDPMKLHSYGLSVTDVLSAISQQNVIVSPGRTGDEPATSSQEVTY 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K ++S +              +        ++ A R        +   L     G 
Sbjct: 233 PITVKGQLSSVE-------------EFRNITIKSQVSAARVTLADVARVESGLQSYAFGI 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +   T          L           V          S   
Sbjct: 280 RENGVPATAAAIQLSPGANAISTASGIRARLTELSGVLPEGMTFTVPFDTAPFVKLSILK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+ + +   +  L+      + ++ T  ++ L G ++ + ++ G++
Sbjct: 340 VVETFVEAMVLVFFVMLLFLHKIRCTLIPAIVAPVALLGTFTVMLLSGYSINILTMFGMI 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      K  S   +           I    +      + + F 
Sbjct: 400 LAIGIIVDDAIVVVENVERLMEDKKMSPQDATREAMREITPAIIGITLVLTAVFIPMAFA 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+I+M +SIL+S F A+++  A+   +++   +     +  S +F     
Sbjct: 460 SGSVGIIYRQFSISMAISILLSAFLALTLTPALCATLLKPHGIHQGKSSVFSAWFNAHFH 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLF 565
               F       V       +     L 
Sbjct: 520 RLTSFYATGLGFVLKRTGRMMMIYAALC 547



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 76/197 (38%), Gaps = 10/197 (5%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWY 691
             L  +   + E +  +   +T         +++   +  +++    ML+++  IR    
Sbjct: 308 ARLTELSGVLPEGMTFTVPFDTAPFVKLSILKVVETFVEAMVLVFFVMLLFLHKIRCTLI 367

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            A+ A   L      T     L G   N+  +  ++  IG  V+D +VV + +     + 
Sbjct: 368 PAIVAPVAL----LGTFTVMLLSGYSINILTMFGMILAIGIIVDDAIVVVENV--ERLME 421

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVA 808
              +S +D   +++ E     +  ++      +PM    G   I    F+I MA  I+++
Sbjct: 422 DKKMSPQDATREAMREITPAIIGITLVLTAVFIPMAFASGSVGIIYRQFSISMAISILLS 481

Query: 809 ASSSIFIAAPILLFIYD 825
           A  ++ +   +   +  
Sbjct: 482 AFLALTLTPALCATLLK 498



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++S + + + +   ++ W      +  + L +   +   ++  +  ++     ++TLIG
Sbjct: 870  IVLSVLVVFMVLAALYESWSIPFAVMLVVPLGLLGAVLAVSVTNMTNDVFFKVGLITLIG 929

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             S  + +++ +  R   +L     S  D    +    L   + TS+A  + V+P+ +  G
Sbjct: 930  LSAKNAILIIEFAR---QLMKEGKSLIDATLTAAKLRLRPILMTSLAFTLGVVPLMLASG 986

Query: 792  SVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      +    +  G++     +IF      + I  +     
Sbjct: 987  ASDSTQHAIGTGVFGGMISGTLLAIFFVPVFFVTITRFTGMRK 1029


>gi|113869541|ref|YP_728030.1| cation/multidrug efflux pump [Ralstonia eutropha H16]
 gi|113528317|emb|CAJ94662.1| Cation/multidrug efflux pump [Ralstonia eutropha H16]
          Length = 1047

 Score =  179 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/611 (13%), Positives = 160/611 (26%), Gaps = 38/611 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   +  +L  +    GL+      L +  + ++P+  P   I          +     
Sbjct: 6   LKRPAFAWVLAILTVVAGLVA-----LNRIPIAQYPAVAPPTVI---------VYADYPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    ++    +        S       +TL F      +     V   + 
Sbjct: 52  ASARTVEDRVTAVLEQQMHGIPGLLYLDSSSEGGTATVTLGFRQGTDPQLAQVNVRNRVA 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L    ++  +        + +      D                 +  +      
Sbjct: 112 QAEPLLPEAVRRGGVYVDQASSSAFMYVSLVSDSGQLDETALGDFAAGSVLPLLRRLPGI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          L    DP +L     TTA++       N +      G          Q
Sbjct: 172 GKAEPYGA-EYALRIWFDPDKLHAFNLTTAEVEAAIRARNGNVTPGQLGAAPALPGQPFQ 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +V     +S                     +                 +    +    G
Sbjct: 231 AIVRPPAPMSDAQ-------------AFGRIVVRAATDGSAVLLRDVARVELAASDYRYG 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T  T          G        +          S S
Sbjct: 278 STLNTRNAASIGLKLADGANVLQTSRTVRAALDAASKGFPGDVRYEISYDGATFVQASIS 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV ++L++ +   +  L+    + ++++ T+A L  LG +L + ++ G+
Sbjct: 338 RVVLTLVEATVLVFLILYLFLGNLRATLIPCIVVPVSLLGTVACLYALGLSLNVITLFGV 397

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E +             +           +    +      V + F
Sbjct: 398 VLAIGILVDDAIVVVENVERIMRTDGVGAMQAAARSMREVSGALVAVTLVLCAVFVPMAF 457

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSR 530
           FG   G   R FA+T+ +SI  S+F A+++  AM   +           +   D    + 
Sbjct: 458 FGSAVGVIYRHFAVTLAVSIAFSLFFALTLAPAMCASLLRHSAAPARGPLAWFDARFAAF 517

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  +     R   W      L   C   L          +  G I + V       
Sbjct: 518 TGRYAGWVQALQRRRLRWLAVYLALTLACGYALWKMPSGFLPEEDTGEIVVDVELPAGST 577

Query: 591 LSVVRSNLESL 601
            +  R  +  L
Sbjct: 578 QADTRRLVAGL 588



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 90/286 (31%), Gaps = 9/286 (3%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                               D +   ++ V A       ++R                  
Sbjct: 221 APALPGQPFQAIVRPPAPMSDAQAFGRIVVRAATDGSAVLLRDVARVELAASDYRYGSTL 280

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV---PLSTIQNTEIVGPKISRELIRKGI 670
                  +  +  D     +    V+  +       P          G    +  I + +
Sbjct: 281 NTRNAASIGLKLADGANVLQTSRTVRAALDAASKGFPGDVRYEISYDGATFVQASISRVV 340

Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           + ++ + + + + +++        L     + + +  T+      G+  N+  +  V+  
Sbjct: 341 LTLVEATVLVFLILYLFLGNLRATLIPCIVVPVSLLGTVACLYALGLSLNVITLFGVVLA 400

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + +     + T  +       +S+ E  G  V  ++      +PMA +
Sbjct: 401 IGILVDDAIVVVENV--ERIMRTDGVGAMQAAARSMREVSGALVAVTLVLCAVFVPMAFF 458

Query: 790 G---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G   G +   FA+ +A  I  +   ++ +A  +   +    A  AR
Sbjct: 459 GSAVGVIYRHFAVTLAVSIAFSLFFALTLAPAMCASLLRHSAAPAR 504



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 88/263 (33%), Gaps = 10/263 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++ V   +   +S+          G+++ + FDG  +  +  +  PG +    
Sbjct: 775  MQPDQLARVHVRNAQGAMVSLAAFASLEWGRGEVTLERFDGFSSVRINAEVAPGHTTGAA 834

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI-YIWIRFKWY 691
                    +                  +       +      +S + + +  + +   W 
Sbjct: 835  MTRLAELVRELGPEYDVRWTGRAFEQEQTG----TQAPWLFALSLLFIFLCLVALYESWT 890

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I  +   +        L G+  ++     V+ ++G +  + +++ +   + ++  
Sbjct: 891  LPLAVIAIVPTGLMGAAAAIWLRGMPNDVYFKVGVVVIMGLAAKNAILIVE-YAEQLRRS 949

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +   +   ++  + L   V TS+A  + V+P+A+    G     +    +  G++ A
Sbjct: 950  GAGMGAVEAATRAARQRLRPVVMTSLAFVLGVVPLAISTGPGAGAQQAVGTGVLGGMLGA 1009

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
                  +A P+L      R   A
Sbjct: 1010 TVLGT-LAVPLLYAAIARRLPRA 1031


>gi|254516129|ref|ZP_05128189.1| AcrB/AcrD/AcrF family protein [gamma proteobacterium NOR5-3]
 gi|219675851|gb|EED32217.1| AcrB/AcrD/AcrF family protein [gamma proteobacterium NOR5-3]
          Length = 1040

 Score =  179 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/685 (10%), Positives = 192/685 (28%), Gaps = 47/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +   +  ++  ++   G++  L     Q     +P   P               +V   E
Sbjct: 9   QRPVFATVIALLLVSFGIMAFL-----QLSTREYPDMSPAQ-----------VSIVTDYE 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D V   +    ++    ++       S    ++ IT+ F   R  +  A+ V   +
Sbjct: 53  GAASDVVETRITQPIEDEIGGIEGIRTIRSSSSDGRSTITVEFELGRDIDAAANDVRDRV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
              + +L  + ++  +     +   +V      +      ++ +    R  +D+  +   
Sbjct: 113 SRASRRLPEEAERPQVSKADSETTPLVYMSVGGEG--MSPMDITDYAERYIVDRFAVLPG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    D  +L       + +       N           ++      
Sbjct: 171 VASVRVFGGAPRSMRIWLDRQKLSARQLAVSDVLAALRRENVELPAGRLDSEYME----L 226

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              VE     +G                    +                 + +  +    
Sbjct: 227 PVRVERSYRSAGD---------------FRRLVLSRGEDGHLVRLAEVARVDEGPSTKRR 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                           ++  +    ++        L A                    + 
Sbjct: 272 LFYSNGENSVSVGVVKQSDANTVEVLDAVHKEMLALEADLPDGMGIASSGDASAFIRAAI 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +    T A+   LV IV+ + +   +  L+    I ++++  +  L  +  +L L ++  
Sbjct: 332 NGVYTTIALTIALVSIVILLFLGTIRATLIPVVCIPVSLLGAVIALQAMDYSLNLITLLA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I+V E I     + +    +   G  +    +  +    L     + F
Sbjct: 392 MVLAVGLVVDDAIVVLENIYRRVEEGEPPLLAAVGGAQQVGFAVIATTAVLLAVFSPVVF 451

Query: 480 FGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
               + R     A+T+ +++ IS   A+S+V  +   I+R     S+    + R      
Sbjct: 452 LQDASSRLFVELAVTISVAVCISSVLALSLVPMLCSQILRAHTSHSVLDRVVERGMRRLR 511

Query: 537 CIAIQFMRARFWGVGISILFSICSIC-----LLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +R       +S++  + +                 ++ +  +   + A    ++
Sbjct: 512 SAYETSLRYLLGHAWLSLVLVVLAFAALPLLFQQLKQEYVPVEDQDSVMAIITAQEGTNI 571

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R  +E LQ   +  +        L    ++   S A       +            +
Sbjct: 572 DSMREIIERLQPPLLELEKSGSLTRVLFVAPFRNSTSTATAFSRISMVPWNQRDYSAFEL 631

Query: 652 QNTEIVGPKISRELIRKGIVGVIIS 676
           ++      +    +     V   + 
Sbjct: 632 RDQMAATWRDVPGIRVMTFVPAGLG 656



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 73/253 (28%), Gaps = 10/253 (3%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               +L +       L  +       +      + F       V +            VL
Sbjct: 238 GDFRRLVLSRGEDGHLVRLAEVARVDEGPSTKRRLFYSNGENSVSVGVVKQSDANTVEVL 297

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKW 690
           + V K++  +                S  +          + + I+ ++++I +      
Sbjct: 298 DAVHKEMLALEADLPDGMGIASSGDASAFIRAAINGVYTTIALTIALVSIVI-LLFLGTI 356

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L  +  + + +   +          NL  + A++  +G  V+D +VV + +    + 
Sbjct: 357 RATLIPVVCIPVSLLGAVIALQAMDYSLNLITLLAMVLAVGLVVDDAIVVLENI---YRR 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                           +     + T+        P+     +    F + +A  I VA  
Sbjct: 414 VEEGEPPLLAAVGGAQQVGFAVIATTAVLLAVFSPVVFLQDASSRLF-VELAVTISVAVC 472

Query: 811 SSIFIAAPILLFI 823
            S  +A  ++  +
Sbjct: 473 ISSVLALSLVPML 485



 Score = 42.4 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 53/122 (43%), Gaps = 4/122 (3%)

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
              ++ + + + +  +F+ +      + T+ L +   L    L G  FNL +   +L LI
Sbjct: 857 AFGLALLVLFLVMAAQFESFIHPAVIMVTVPLALGGGLLGLYLTGQSFNLFSQIGLLMLI 916

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G +  + +++ + +    ++    + F   I K+    L   + T+++  +  LP+ +  
Sbjct: 917 GIATKNGILLVEFIN---QVRDEGLEFMQAIVKASVLRLRPVLMTAVSTIVGTLPLVLMV 973

Query: 791 GS 792
           G 
Sbjct: 974 GP 975


>gi|121592761|ref|YP_984657.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acidovorax
           sp. JS42]
 gi|120604841|gb|ABM40581.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax sp. JS42]
          Length = 1050

 Score =  179 bits (452), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/661 (10%), Positives = 179/661 (27%), Gaps = 40/661 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           + ++P+  P               +      
Sbjct: 8   RPIFAWVIAIVIMLLGVLAI-----KGLAISQYPNVAPPAI---------SISVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L        +     + +I ++F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGLDGLRYITSASESDGSMQIVVTFEQGTDPDIAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +     +   +++     +    ++ + +  I     D +  ++   
Sbjct: 114 ATPMLPQEVQQQGIRVAKYQMNFMMVVGLVSEDGRMNSKDLADYIASNIQDPVSRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFTLFGAP-YAMRIWLDPAKLNAHQLTPTDVIAAVQSQNVQISAGQLGGLP--------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + DKV++    L            +    +        +       ++           
Sbjct: 224 TINDKVQLQATVLGKTR---MKTADEFREIMLKVRPNGAQVRLKDVADVQLGGQFSSISG 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   +I       A L          +           S   
Sbjct: 281 KFDGKPASGLALRLATGGNVLESIAAVRDTIAQLEPNFPQGVKVVYPYDTSPVVQVSIDS 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+ + +   +  ++   ++ + ++ T  +L   G T+ L ++  +V
Sbjct: 341 VITTLLEAVVLVFLVMLLFLQSVRATIIPTLAVPVVLLGTFGILLAAGFTINLLTMFAMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +         S   +      +    +    +      V + F 
Sbjct: 401 LAIGLLVDDAIVVVENVERLMHDEHLSPKEATIKSMGQISGALVGIGVVISAVFVPMAFM 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R FAIT+  ++ +S+  A+    A+   I++            + F  + + 
Sbjct: 461 DGSTGVIYRQFAITIAAAMSLSVLVALIFTPALCATILKAPVPGKKPARFFAWFNRVFNA 520

Query: 538 IAIQF--------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            A  +         R + + +   +L +                + +G + + V      
Sbjct: 521 SASGYAVGVEGILKRNKGFLLIYVLLLAGLVALFARIPTAFLPDEDQGTLMVQVQLPSNA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             +     L+++    +  +    +    V      G       +   +K          
Sbjct: 581 SAARTDKVLQAVSQHLLDNEKDTVQSVMAVNGFNFAGRGQNNGLLFVELKPFDERKGAHQ 640

Query: 650 T 650
            
Sbjct: 641 H 641



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 71/229 (31%), Gaps = 12/229 (5%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     +     PG S  +   +     K                  K   +    
Sbjct: 814  ERYNGVPAVQIVGSTAPGVSTGEAMAILQDMAKQLPPGVDLVWTGLSYEEIKAGDQSAWI 873

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG--IEFNLTAVAAV 726
              + +++  + +     +   W         L++ +       A  G  +  ++     +
Sbjct: 874  MALSMLVVFLCLA---ALYESWSIPFS--VMLVVPLGILGAVLATLGRGLTNDVFFQIGM 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T +G +  + +++ +  R+  +           + ++    L   V TS+A  + V+P+
Sbjct: 929  ITTMGLAAKNAILIVEFARELYE--DEGKPLFQAVVEAARLRLRPIVMTSLAFVLGVVPL 986

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+  G       S    +  G +     +IF        I     +  +
Sbjct: 987  AIATGASSGSQHSIGTSVVGGTLAGTFLAIFFVPLFFYVIASITQRFRK 1035



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +     + + +  T G     G   NL  + A++  IG  V+D +VV + +    
Sbjct: 362 SVRATIIPTLAVPVVLLGTFGILLAAGFTINLLTMFAMVLAIGLLVDDAIVVVENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            ++   +S ++   KS+ +  G  V   +      +PMA   GS       FAI +A  +
Sbjct: 420 LMHDEHLSPKEATIKSMGQISGALVGIGVVISAVFVPMAFMDGSTGVIYRQFAITIAAAM 479

Query: 806 VVAASSSIFIAAPI 819
            ++   ++     +
Sbjct: 480 SLSVLVALIFTPAL 493


>gi|319426109|gb|ADV54183.1| acriflavin resistance protein [Shewanella putrefaciens 200]
          Length = 1031

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 72/629 (11%), Positives = 177/629 (28%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISLLVVAFGLVS-----FDKLPLREYPNIDPPIV---------SIETNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F  SR  E+ A+ V   + G
Sbjct: 55  SAAVVESRITQLIEDRISGVEGIRHVSSSSSDGRSSVTLEFDISRNIEDAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +      +  I+      D      +E +    R   D++ + +   
Sbjct: 115 LLDNLPEEADPPEVQKANGGDEVIMWLNLVSDN--MTTLELTDYTNRYLSDRLSVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 RIRIGGGKVYAMRIWLDRQALASRSLTVADVEAALRAENVELPAGSIESKERHFTVRLE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RSYRTAEDFANLVLTQGDDGYLVKLGDVAKVEIGSEEERIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +          L   +               +      S   
Sbjct: 274 RGNKEAMIGLGVSKQSTANTLEVARAVNALIDKINPTLPAGMSIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFIAMILVIIVIYLFLGSARAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEEGDSPLKAAYLGAREVAFAVIATTLVLVSVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+ M  +++ S   A+++   M   +          ++ +D    S    
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSIVALTLSPMMCSKLLKPATQDSWLVRKVDGIMASIARG 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     +     V +          +          + +G + L V   +      
Sbjct: 514 YQTSLQKAMAKPLLMSVLVLCALGSSFFLVQKVPQEFAPQEDRGSLFLMVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           + S +  ++   +   +    K  L+R  
Sbjct: 574 IESYMTEVENRLMPLVDAGDIKRLLIRAP 602



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 11/216 (5%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             +    +++   R +  +  KI   +P                  I++    + I+ I 
Sbjct: 285 VSKQSTANTLEVARAVNALIDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFIAMIL 344

Query: 680 MLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           ++I I          L    T+ + +  T       G   NL  + A++  IG  V+D +
Sbjct: 345 VIIVIYLFLGSARAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIG 795
           V+ + +    +      S          E     + T++      +P+    G    +  
Sbjct: 405 VMLENIH---RRIEEGDSPLKAAYLGAREVAFAVIATTLVLVSVFMPITFLEGDLGKLFK 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            FA+ M+  ++    SSI +A  +   +     K A
Sbjct: 462 EFAVAMSAAVI---FSSI-VALTLSPMMCSKLLKPA 493



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L      G   N+ +   ++ L+G 
Sbjct: 860  LLALGIVFLVLAAQFESYIHPIVIMLTVPLATVGALAGLWFTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++ ++ L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVDFDRAIIQAASQRLRPILMTGITTAAGAIPLVMAVGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            G        + +  GI++A   +IF+   
Sbjct: 977  GAETRFVIGVVVLSGILLATLFTIFVIPT 1005


>gi|170735053|ref|YP_001774167.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia MC0-3]
 gi|169821091|gb|ACA95672.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia MC0-3]
          Length = 1063

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/519 (11%), Positives = 141/519 (27%), Gaps = 40/519 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               ++L  ++  +G L           +  +P   P               +V++    
Sbjct: 11  PVLAIVLSIVLTIVGALA-----YFSLAVSEYPDIAPPT-------------VVIQATYP 52

Query: 64  DFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
                 +       +   +                 +  IT++F      +     V   
Sbjct: 53  GASAETVSQTVSTPIELEVNGVEDMLYMYSQATSDGSLNITVTFKPGTDVDKAQVLVQNR 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L    +++ +         +              +  S   IR   D +   E
Sbjct: 113 VALATPRLPEPVQRSGVSVRKSSPTQLGTIFLYSPDQRYDPLYVSNYAIRNVADVLKRIE 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP R+     + A +       N    G +     + +   
Sbjct: 173 GVGDINALGAREYSMRIWLDPERVASFGLSPADLIAAVRSQNTQLAGGVVAQAPITNQAF 232

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              L+                    +       +       R         +        
Sbjct: 233 QPNLI--------------FEGRLKRPEDFSDIVVKQGKDGRLVRLKDVARVEVGALAYA 278

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +            +   +   T++      A L        +  +          S
Sbjct: 279 TDSYMLRHPTIALQVLQQPGANAVATMDAVEKKMAELSRDFPNGIVYNIGYNPTAFIGDS 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV+ V+ + +   +  ++   SI ++++ T A +++LG ++   ++ 
Sbjct: 339 IHELVKTIYEAVVLVVFVVLLFLQGWRPSIIPILSIPVSLVGTFAAMAMLGYSINNLTLF 398

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATV 475
           G+VL +G+ VD+ I+V E +            +  +       A   I        + T 
Sbjct: 399 GLVLAVGIVVDNAIVVVENVERHLAAGAGPRDATLLTMKEVGGALFAITLVLCAVFVPTS 458

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            +    G   R F +T+ +S  IS FT++++  A+   +
Sbjct: 459 FIPGISGQFFRQFGVTIAVSTAISFFTSVTLAPALSAMM 497



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  I ++ + +  T    A+ G   N   +  ++  +G  V++ +VV + +    +
Sbjct: 364 WRPSIIPILSIPVSLVGTFAAMAMLGYSINNLTLFGLVLAVGIVVDNAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                   RD    ++ E  G     ++      +P +      G     F + +A    
Sbjct: 421 HLAAGAGPRDATLLTMKEVGGALFAITLVLCAVFVPTSFIPGISGQFFRQFGVTIAVSTA 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++  +S+ +A  +   +  
Sbjct: 481 ISFFTSVTLAPALSAMMLK 499



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 52/145 (35%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +  + + +          G + N+      + L+G +  + +++ +  R   
Sbjct: 910  SWSLPVSILLIVPMCLLAASLGVRALGQDVNILTQIGFIVLVGLAAKNAILIVEVAR--- 966

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L        + + ++  + L   V TS+A  + VLP+ +    G  +  +    + FG+
Sbjct: 967  QLEADGAELVEAVVEACVQRLRPIVMTSLAFILGVLPLVISEGAGAEMRQAVGAAVFFGM 1026

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +       + +     + 
Sbjct: 1027 IGVTFFGLLFTPVFYVMVRRLAMRK 1051


>gi|289625469|ref|ZP_06458423.1| AcrB/AcrD/AcrF family transporter [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
          Length = 679

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 180/692 (26%), Gaps = 55/692 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDLAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIFTLNYKDGSATKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 RRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAIRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSAVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVKQRLTELSVNFPEGVEFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHSEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGRFTDRYERVSSGMIKRAGRYMLLYVGIVGLLGFFYLRLPDSFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V        S       + Q+ +    + +      + L +          +     K 
Sbjct: 575 DVQLPPGATRS---RTDLTAQLLENYMLSREATGAVTMLLGFSFSGMGENAGLAFPTLKD 631

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +E     +         +    L    ++ V
Sbjct: 632 WSERGKGQSAAEEAAAFNQHFSGLADGTVMAV 663



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVKQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500


>gi|302061359|ref|ZP_07252900.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato K40]
          Length = 643

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 72/632 (11%), Positives = 172/632 (27%), Gaps = 52/632 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P+  P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   +   D      +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLMIFTLSYTGDSANKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAVRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T++        L           V       
Sbjct: 275 QDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPEGVEFSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ LLG ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGKFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            V        +   +  + L+   +S +    
Sbjct: 575 DVQLPPGATRARTDATAQLLENYMLSREATGA 606



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   + ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSVPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++      LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVFLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500


>gi|313141364|ref|ZP_07803557.1| multidrug resistance protein mexb [Helicobacter canadensis MIT
           98-5491]
 gi|313130395|gb|EFR48012.1| multidrug resistance protein mexb [Helicobacter canadensis MIT
           98-5491]
          Length = 1028

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/681 (12%), Positives = 205/681 (30%), Gaps = 44/681 (6%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           ++  +I   G L  +        ++ +P   P               +V++         
Sbjct: 2   VMSIIIVIAGGLSIM-----SLAVEEYPQVTPP-------------QVVVQATYPGASAE 43

Query: 69  FLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVN 123
            +       L + +   EG+         +    I + F +    +     V   +Q V 
Sbjct: 44  VISSSVASVLENSINGVEGMIYMQSSSTSSGSLNINIYFTNETDPDQATINVNNRVQAVM 103

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S L  + ++  +         + +     D         +       ++++         
Sbjct: 104 SSLPQEVQRQGVTVDKRSSTILAVYSLFSDSPAHDTTFIANYAAINILEELKRVPGVGDA 163

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
               R    +     P +L +   T A++       N+      FG   +R      Y V
Sbjct: 164 ALFSRQEYSMRIWLSPDKLTKYNLTPAEVIALVQEQNSQFAAGFFGQEPVRKDLDFTYTV 223

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             +   +                +    +                 I             
Sbjct: 224 TTQGRFT-------------TPEEFGNILVRTNPDGSSLLLKDLARIELGAEDYSVNAFY 270

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       +   +     E        L           +          S     
Sbjct: 271 NGRPSVAFGLFLQPGANALSVAEGVAKRLEELSQSFPEGLQYAIPYDTTSFVNVSIKEVI 330

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T      LV+IV++  +   +  ++   +I +++I T A + LLG ++ L ++ G++L 
Sbjct: 331 KTFIEAIVLVIIVIYFFLQNFRATIIPVLAIPVSIIGTFAGMYLLGFSINLLTLFGLILA 390

Query: 424 IGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           IG+ VD  I+V E +    + +N SV  +         S +    +      + + F G 
Sbjct: 391 IGIVVDDAIIVIENVERLISEENLSVKDATIKAMEEIASPVVAIVLVLSAVFIPIAFIGG 450

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI---NPLSRFFLIPD 536
             G   + FAIT+ +S++IS F A+++  A+ + I++  + K   I         +L   
Sbjct: 451 FSGEIYKQFAITIVISVVISGFVALTLTPALCVSILKKTEPKPFWIVKKFNDFFAWLTHQ 510

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R     + +   + ++       +  G+       + +++ +    + +  
Sbjct: 511 FTDKVAHAIRRGVFYVILFAGLIAVTYGLFTRVPTGLVPAEDKGMLIVSMKLPPATALSK 570

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             ++    + + +N    +  +    Y    S  +T       K     +     Q +++
Sbjct: 571 TTDTASFMESTIRNNPNVEAVMALAGYDMLSSAVRTFGGTAFVKLKDWDLRKDESQKSQV 630

Query: 657 VGPKISRELIRKGIVGVIISA 677
           +   ++ +L++     VI + 
Sbjct: 631 LAQSLTGQLMQN-PNAVIFAL 650



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 77/203 (37%), Gaps = 6/203 (2%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
              +    +++++  P                  I++ I   I + + ++I I+   + +
Sbjct: 292 AEGVAKRLEELSQSFPEGLQYAIPYDTTSFVNVSIKEVIKTFIEAIVLVIIVIYFFLQNF 351

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              +  +  + + I  T     L G   NL  +  ++  IG  V+D ++V + +     +
Sbjct: 352 RATIIPVLAIPVSIIGTFAGMYLLGFSINLLTLFGLILAIGIVVDDAIIVIENV--ERLI 409

Query: 751 YTTSISFRDLIDKSINETLG---RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
              ++S +D   K++ E        V    A FI +  +  + G +   FAI +   +V+
Sbjct: 410 SEENLSVKDATIKAMEEIASPVVAIVLVLSAVFIPIAFIGGFSGEIYKQFAITIVISVVI 469

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +   ++ +   + + I       
Sbjct: 470 SGFVALTLTPALCVSILKKTEPK 492



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 6/163 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G++  I   + + + +  ++ +W   L  +T +   +   +    L G+  ++     +
Sbjct: 856  TGVIAFIFGLVFVFLILAAQYERWLMPLAVLTAVPFAVFGAILATWLRGLNNDIYFQIGL 915

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LI  S  + +++ +   +         +  D   ++        V TS+A  I VLP+
Sbjct: 916  VMLIALSAKNAILIIEFAME--AREKHGKNIYDSAVEAARLRFRPIVMTSLAFTIGVLPL 973

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            A+    G +   +    +  G++ A   + F       +   +
Sbjct: 974  AISSGAGAASRHAIGTGVIGGMLAATFIATFFIPLFYTYFARF 1016


>gi|254489801|ref|ZP_05102996.1| RND transporter, HAE1 family [Methylophaga thiooxidans DMS010]
 gi|224464886|gb|EEF81140.1| RND transporter, HAE1 family [Methylophaga thiooxydans DMS010]
          Length = 1056

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/696 (9%), Positives = 185/696 (26%), Gaps = 57/696 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +   +G +  L        ++++PS  P               + +    
Sbjct: 10  RPIFATVISIITVIVGAMAFL-----TLPIEQYPSVAPPT-------------IQVSASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   EG+     +   +    ++++F      +     V  
Sbjct: 52  PGATAETVAETVATPIEQEVNGVEGMLYMFSQASSDGSMTLSITFELGTDLDTAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    +   + T       +++   +           +   +    D++   
Sbjct: 112 RVAIAEPRLPEVVRSMGVTTRKNTPDLMLVVNMSSPDGTYDQNYLANYGVLNVRDRLRRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +     P  L+        +       N              + +
Sbjct: 172 EGVGEVRVFGAADYAMRIWLKPDLLQSYGIAAGDILTALRSQNIQVASGTLNSAPQTEQN 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y+V+ +  +               T +   ++       R         I       
Sbjct: 232 YYEYIVQTQGRLE--------------TPEQFGEVIVKASEGRIVRLKDVARIELGAQEY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +   T +        + A   P                
Sbjct: 278 VTKGYLGEKPAVALPIFQRPGSNAIATTKALMAEMEDIAADFPPGIEYEFAYNPTEFIEQ 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV+IV+ + +   +  ++   +I +++I T A++S LG +L   ++
Sbjct: 338 SVEAVEFTVYEAVFLVVIVILVFLQTWRAAIIPIVAIPVSLIGTFAVMSALGFSLNNLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I++ E +    RK  S   S         + +    +  +   +  
Sbjct: 398 FGLVLAIGIVVDDAIVIVENMERNLRKGLSPRESARKTMDEVGTALIAMGLVLVAVFLPT 457

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR----------------YK 518
            F G   G   + F +T+ ++ +IS+  ++++  A+   +++                  
Sbjct: 458 MFLGGISGKFYQAFGLTVAVATIISVAVSLTLSPALAAILMKVDPNHDKPVIWYKSPVKA 517

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                +             +           +    L +  +               +G 
Sbjct: 518 FFNGFNKGMEGLSERYGWFVGKTIRMTTIMLLIYGGLMTFTAFQFDRVPTGFIPSQDQGS 577

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + +       L+     ++ +    +          F                +   +
Sbjct: 578 LIVAITLPEGASLNETDKVVQEVTRQMLEVPGLANTVGFTGFSGATRTLQSNSAVLFTPL 637

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +     I      Q        +     +   + V 
Sbjct: 638 ESFDKRIAEGIEYQTILSDMRAVGAS-FKNAQIAVF 672



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  A+  I  + + +  T    +  G   N   +  ++  IG  V+D +V+ + M +N++
Sbjct: 364 WRAAIIPIVAIPVSLIGTFAVMSALGFSLNNLTLFGLVLAIGIVVDDAIVIVENMERNLR 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                +S R+   K+++E     +   +      LP    GG       +F + +A   +
Sbjct: 424 ---KGLSPRESARKTMDEVGTALIAMGLVLVAVFLPTMFLGGISGKFYQAFGLTVAVATI 480

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           ++ + S+ ++  +   +      + +
Sbjct: 481 ISVAVSLTLSPALAAILMKVDPNHDK 506



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/195 (12%), Positives = 75/195 (38%), Gaps = 10/195 (5%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
               +++ + +    +           +      I+  +++ + + + +  +++ W   L 
Sbjct: 849  DTMEQLADQILPDGVGYEWTEIAYQQKSTGDTAILAFVLAVVFVFLLLAAQYESWTLPLS 908

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             I  + + +   +    + G++ N+     ++ L+G +  + +++ +  R+   L     
Sbjct: 909  IILIVPMCLLSAITGVYIAGMDNNILTQIGLVVLVGLASKNAILIVEFARE---LEDQGR 965

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV-VAASS 811
               +   ++    L   + TS A  + V+PM +    G  +  +  + +  G++ V A  
Sbjct: 966  DIWEAAVEAARLRLRPILMTSFAFILGVVPMVIAEGAGAEMRQALGVAVFSGMLGVTAFG 1025

Query: 812  SIFIAAPILLFIYDW 826
             IF   P+   +   
Sbjct: 1026 LIF--TPVFYVLCRK 1038


>gi|162453560|ref|YP_001615927.1| acriflavin resistance protein [Sorangium cellulosum 'So ce 56']
 gi|161164142|emb|CAN95447.1| acriflavin resistance protein [Sorangium cellulosum 'So ce 56']
          Length = 1060

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/512 (11%), Positives = 144/512 (28%), Gaps = 20/512 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   +  +L +     GL+        +  + +FP                     LE 
Sbjct: 8   LRKPVFAWMLMAATIVFGLVAV-----SRIGISQFPDVDFPTIT---------ISATLEG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    +E    ++       + RQ    +T+    SR  +     V   + 
Sbjct: 54  AAPEIMEHDVVEPLEEAAVQVEGIRSITSTSRQGSASVTIELDLSRDVDVALQDVQTKIS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L +D    ++  T  ++  I+    +         + +     +  +++      
Sbjct: 114 QAQRRLPLDLDPPVVSKTNPEDQPIMWVGLSGPFSPQLVADIARY---RLKEKLQTVPGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      +   +    D  RL     T A ++      +               +    
Sbjct: 171 GELTLGGYLERNVRIWIDADRLAARGLTVADVTEALRRQHIELPAGRIETEGRELNVRVM 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
               D      I L         +                  +      +      V   
Sbjct: 231 GEALDLATFKRIVLRQGDPGAAAQPGAAAQAAGPPSSARATVYLEDVALVEDGFEDVRRL 290

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +   +            A ++          V   +      S  
Sbjct: 291 ARVNGEPAQGLGVRKQRGSNAVEVARGVRAALAEVQKSLPEGMEVGVNFDSTKFIEESVH 350

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   L  +V +M +      L    +I ++++ T+A +  LG TL   ++ G+
Sbjct: 351 EIELELGMAIALTALVCWMFLGSLSSTLNVVLAIPMSLLGTVAAIYFLGFTLNTFTLLGL 410

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I       +    +   G +        + +  +   + + F 
Sbjct: 411 SLAVGIVVDDAIMVLENIHRHAEGGKDRVRAAREGTAEITFAALAATLAVVAIFLPIIFM 470

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRA 509
               G     F +T+ +++L+S   AI++  A
Sbjct: 471 EGVVGRFFLQFGVTLCIAVLLSYLEAITLAPA 502



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 68/161 (42%), Gaps = 8/161 (4%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  +++  +   + +  +F  +   +  +T L L I        L G   N+ ++  +L 
Sbjct: 872  LFALVLGILVAYMVLASQFNSFLHPVTVLTILPLSIAGAAFALLLTGHTLNIFSMIGILL 931

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTS----ISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            L+G    + +++ D   +  + +       +  R+ + ++    L   + TS+A  ++ +
Sbjct: 932  LMGIVKKNSIILVDHAIEVRRGHGEGAGEVMDAREAMLRAGPVRLRPILMTSIATLMAAV 991

Query: 785  --PMAVWGGSVIG-SFAIPMAFGIVVAASSSIFIAAPILLF 822
               +A+  G+ I    A  +  G+VV+ + S+ +     + 
Sbjct: 992  PSALALGPGAEIRAPMAAAVIGGLVVSTALSLLVVPAFYVV 1032



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 78/250 (31%), Gaps = 8/250 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V    +  +      +        L   + +  ++V   R +     ++ + +P 
Sbjct: 272 VYLEDVALVEDGFEDVRRLARVNGEPAQGLGVRKQRGSNAVEVARGVRAALAEVQKSLPE 331

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKT 707
                      K   E + +  + + ++     +  W         L  +  + + +  T
Sbjct: 332 GMEVGVNFDSTKFIEESVHEIELELGMAIALTALVCWMFLGSLSSTLNVVLAIPMSLLGT 391

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +      G   N   +  +   +G  V+D ++V + +    +             +   E
Sbjct: 392 VAAIYFLGFTLNTFTLLGLSLAVGIVVDDAIMVLENIH---RHAEGGKDRVRAAREGTAE 448

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAP-ILLFI 823
               ++  ++A     LP+    G V      F + +   ++++   +I +A       +
Sbjct: 449 ITFAALAATLAVVAIFLPIIFMEGVVGRFFLQFGVTLCIAVLLSYLEAITLAPARCAQIL 508

Query: 824 YDWRAKNARI 833
              R    R+
Sbjct: 509 DVSREGRGRL 518


>gi|255318925|ref|ZP_05360151.1| EefB inner membrane protein [Acinetobacter radioresistens SK82]
 gi|262378823|ref|ZP_06071980.1| cation/multidrug efflux pump [Acinetobacter radioresistens SH164]
 gi|255304181|gb|EET83372.1| EefB inner membrane protein [Acinetobacter radioresistens SK82]
 gi|262300108|gb|EEY88020.1| cation/multidrug efflux pump [Acinetobacter radioresistens SH164]
          Length = 1032

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 85/683 (12%), Positives = 193/683 (28%), Gaps = 46/683 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+   +        ++R+P   P               + +    
Sbjct: 9   RPIFAGVLAIIVMAFGIFSVI-----NLPVERYPDIAPP-------------QITVAATY 50

Query: 63  DDFVNGFLQMYSDEL-RSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +      ++    +L    +K           S    +++I++SF +    +    +V  
Sbjct: 51  NGASAETVEESVTQLLEQQIKGIDHLLYFSSSSDSSGRSRISISFENGTDPDTAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + GV S+L  D ++  +        + ++         S+ IE S  ++     +I   
Sbjct: 111 SINGVLSRLPEDVQRQGVNVWKSLGDTHMVIGLYDQTGKSNNIELSDYMMTHLEQEISRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP RL+Q     + +       N        G        
Sbjct: 171 EGVGEVDVFGSQ-YAMRIWLDPDRLKQYNLMPSDIRAAVEAQNTQVAAGGIGDLPTASEQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     +                 +    I      A   +      I       
Sbjct: 230 YLNAKVSSGSRL-------------KTVEEFENIIIKSSANAGFVYLKDIARIELGAENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +          S     +   T          L          +    N      
Sbjct: 277 QSFNTINGYPSAGLGISLATGANALQTSALIKQTIDRLTEKLPAGYKIVYPRDNTPFVQE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   ++
Sbjct: 337 SIKEVVTTLIEAVILVILVMFLFLQSWRATLIPTITVPVVILGTFAILYVLGLSVNTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +           +    +      + 
Sbjct: 397 FALVLAIGLLVDDAIVVVENVERLIEERQFSPKQAALESMQEISGALVGITLVLTAVFIP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPL 528
           + FF G      R F+IT+  ++ +S+  A+ +  A+   I        +     +    
Sbjct: 457 MAFFSGSTGVIYRQFSITLVAAMALSLLVALILTPALCALILKPKQQHARWANGFNKKLE 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    I         + V    L ++ ++            + +G + +       
Sbjct: 517 RLRQYYLKVIQSSMQHKMIYSVVFIALIAVFALFYRALPSSFIPSEDQGTLNIQFSLQNG 576

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             ++  +   E +Q   +S +  + E   +   +   G      +    +K         
Sbjct: 577 APMAKSQQVGEEIQRYFLSKEQENVELVLIRYGRNFSGTGQNLGQGFIALKHWDDRPGQE 636

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
           ++ Q       K         I+
Sbjct: 637 NSAQAIRERATKYFSNNPDARIM 659



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 85/210 (40%), Gaps = 8/210 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             S    + ++ + +K+     +   ++      +  +E++   I  VI+  + M +++ 
Sbjct: 302 QTSALIKQTIDRLTEKLPAGYKIVYPRDNTPFVQESIKEVVTTLIEAVILVILVMFLFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L    T+ + I  T     + G+  N   + A++  IG  V+D +VV + + 
Sbjct: 362 ---SWRATLIPTITVPVVILGTFAILYVLGLSVNTLTLFALVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +     S +    +S+ E  G  V  ++      +PMA + GS       F+I + 
Sbjct: 418 -ERLIEERQFSPKQAALESMQEISGALVGITLVLTAVFIPMAFFSGSTGVIYRQFSITLV 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             + ++   ++ +   +   I   + ++AR
Sbjct: 477 AAMALSLLVALILTPALCALILKPKQQHAR 506



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 71/233 (30%), Gaps = 10/233 (4%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
              +    + +       +           D+ +     E ++     I     I      
Sbjct: 795  FSTFASFEWTGGPEVVNRFMGYTALQMEADAGSGFSTGEAMQDVQALIDQFPDIDLAWSG 854

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI 716
                 ++   + I   ++S   + + +   ++ W      +  + L I   + F  L G 
Sbjct: 855  LSFQEQQSSNQAIWLYLVSIGFIFLCLAALYESWSIPTAVMAAIPLGIGGNILFSYLAGF 914

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              ++    A+LT IG S  + +++ +                    +  +  L   + TS
Sbjct: 915  PNDIYFQIALLTTIGLSCKNAILIVEFA---ALAQQRGKDAVAAALEGASLRLRPILMTS 971

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA-SSSIFIAAPILLFIYD 825
            +A    V+P+      G +        +  G++       IFI  P +  +  
Sbjct: 972  LAFGAGVVPLVFASGAGAASRQEIGTSVLGGVIFGTVLVVIFI--PFMYVLVR 1022


>gi|167749239|ref|ZP_02421366.1| hypothetical protein EUBSIR_00190 [Eubacterium siraeum DSM 15702]
 gi|167657790|gb|EDS01920.1| hypothetical protein EUBSIR_00190 [Eubacterium siraeum DSM 15702]
          Length = 337

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 11/302 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+  R     I I+ ++ ++      G+   I+FKGG  L       +D + V+  +E
Sbjct: 7   FDFIGYRKILFLIPIVIAVITVIFNCIFGVEMAIEFKGGTMLTYSYTGEIDTNAVKKTVE 66

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE---IVPLSTIQNTEI 656
               G ++        + L  ++     S   T   +       +        T+ N++ 
Sbjct: 67  GENYGAVTVTTGSSMNSSLEVVEISFSSSEGLTADKQTALSDKLQQTFKDNSLTLVNSQD 126

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFFA 712
           V P    E   K +V V+ S + ++IYI  RFK        + A+  L+ D       F 
Sbjct: 127 VNPTSGTEFFLKCLVAVLFSFVLLVIYIAFRFKKIGGLSAGVFALVALVHDCFMVYAVFV 186

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                 +   +A VLT++G S+N+ +VVYDR+R+N  LY  S+S ++L++ SI +++ RS
Sbjct: 187 FCRFPIDANFMAVVLTVLGNSINNTIVVYDRIRENRNLYGNSLSLKELVNMSITQSITRS 246

Query: 773 VYTSMAAFISVLPM----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           V T++    +VL +    A+ G + I +FAIPM  G++    SS+ I+ P+ +   +   
Sbjct: 247 VNTTVTTAFAVLAICVVCAICGVTSIMTFAIPMMAGLICGTYSSLCISGPLWVLWQEKHG 306

Query: 829 KN 830
           KN
Sbjct: 307 KN 308


>gi|77360318|ref|YP_339893.1| preprotein translocase subunit SecF [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875229|emb|CAI86450.1| putative preprotein translocase SecF, auxillary membrane component
           (General Secretory Pathway) [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 313

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 148/282 (52%), Gaps = 3/282 (1%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R RF G+ +S +  + S+  L   GLN+G+DF GG       ++ ++L  +++ +     
Sbjct: 13  RMRFIGLVLSTVLVLLSVVTLAQKGLNFGLDFTGGYLTEFTTSQSIELKQLKTFIAK--N 70

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            +  F+      N     +    +  A     +            +T+ ++  +G ++  
Sbjct: 71  HNGEFELTAQGNNHFQLREAPAINQSASNSSNDWQSAVTQSTDINATVLSSAYIGSQVGD 130

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + ++ + +A+++Y+ IRF+W  ALG++  L  D+   LG F+L  +EFNLT +
Sbjct: 131 ELFEQGCLALLAAMVAVMLYLAIRFEWRLALGSVVALTHDLILVLGLFSLLQLEFNLTIL 190

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMK-LYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           A++L +IGYS+ND ++V DR+R+ ++     SIS   +I+ +I  TL R++ TS     +
Sbjct: 191 ASLLAIIGYSLNDSIIVGDRVRELLRVKLNASISVSSIINSAIKSTLTRTLITSGTTLAT 250

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           V  + +  G+ +  FAI +  GIVV   SS+ IAA +   + 
Sbjct: 251 VASVWLLAGTPLQGFAIALFSGIVVGTFSSVCIAATLPELMG 292


>gi|146341329|ref|YP_001206377.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           ORS278]
 gi|146194135|emb|CAL78154.1| Putative component of multidrug efflux pump, acrB/acrD/acrF family
           [Bradyrhizobium sp. ORS278]
          Length = 1050

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 58/525 (11%), Positives = 137/525 (26%), Gaps = 39/525 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +      L +  +  +P   P               + +    
Sbjct: 10  RPIFAAVLSIILTIAGAIT-----LTRLPVSEYPEIAPPT-------------VSITASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +     +     +   +    I + F      +     V  
Sbjct: 52  PGASAQVISETVATPIEQEVNGVDDMLYIGSQATGDGRLTINVVFKPGTDIDTAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  D  +  +         +++          +    S        D +   
Sbjct: 112 RVAVATPRLPEDVTRLGITVKKASPDLMMVVHLVSPDGTRNQQYISNYATLYIKDLLARV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP R      T   ++      N             R   
Sbjct: 172 DGVGNINIFGARDYAMRIWVDPDRAAARGLTAGDVTAAVRAANLQVAAGALNQPPARSDG 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  VE    ++                +    +   +             +       
Sbjct: 232 AYEVAVETLGRLT-------------SPEQFEDIVLRADPDGGYLRLRDVARVELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        +   +   +   T +       + +          V          
Sbjct: 279 SVNAYLNGDAATAIVVYQRPGSNALSTAKAVFAAMEIAKRDFPSGLDYKVVYNPTEFIRK 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+ + +   +  ++   +I ++++    ++  +G T    S+
Sbjct: 339 SVDEVVQTLFEAVALVVIVILVFLQSWRAAIIPVVAIPVSLVGCFLVMGAVGLTFNNLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E I     +      +          A   I        + T
Sbjct: 399 FGLVLAIGIVVDDAIVVVENIERYIAEGLDPREASHRTMDEVGGALLAIALVLCAVFVPT 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
             +    G   R FAIT+  + LIS F ++++  A+   +++   
Sbjct: 459 AFILGLQGAFYRQFAITIAAATLISCFVSLTLSPALGAILLKSGH 503



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 83/266 (31%), Gaps = 12/266 (4%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            +         G +++       V +  V    ++     +   N        ++L     
Sbjct: 783  NEFRIDTTDVGSLRMRNSDGDMVPIGSVARFKDASGPYRVPRYNLYPAAEVNLQLAKGYS 842

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   +  +  K +++                  +       V   ++ + + + +  
Sbjct: 843  TGQAIATLEAINAKALSQGFGF-----EWTEIALQEKLSGNTAAVAFGLAVVFVFLLLAA 897

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             ++ W   L  +  + + I   +    L  ++ N+     ++ L+G +  + +++ +  +
Sbjct: 898  LYENWLLPLAVVLIVPMCILAAMIGIDLRSLDRNILVEIGLIVLVGLAAKNAILIVEFAK 957

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
               +         D +  +    L   V TS A  + VLP+A+    G  +  S    + 
Sbjct: 958  ---QAEEQGAKTIDAVSTAARLRLRPIVMTSFAFILGVLPLAIATGAGAEMRQSLGTAVF 1014

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRA 828
            FG++      +       + +     
Sbjct: 1015 FGMIGVTLFGLLFTPTFYVVVRRIEK 1040



 Score = 41.2 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 58/144 (40%), Gaps = 14/144 (9%)

Query: 689 KWYFALGAITTLILDIT---KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            W  A+  +  + + +      +G     G+ FN  ++  ++  IG  V+D +VV + + 
Sbjct: 364 SWRAAIIPVVAIPVSLVGCFLVMGA---VGLTFNNLSLFGLVLAIGIVVDDAIVVVENI- 419

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP--MAVWG--GSVIGSFAIPM 801
              +     +  R+   ++++E  G  +        +V      + G  G+    FAI +
Sbjct: 420 --ERYIAEGLDPREASHRTMDEVGGA-LLAIALVLCAVFVPTAFILGLQGAFYRQFAITI 476

Query: 802 AFGIVVAASSSIFIAAPILLFIYD 825
           A   +++   S+ ++  +   +  
Sbjct: 477 AAATLISCFVSLTLSPALGAILLK 500


>gi|107028456|ref|YP_625551.1| hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|116686451|ref|YP_839698.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia HI2424]
 gi|105897620|gb|ABF80578.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|116652166|gb|ABK12805.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia HI2424]
          Length = 1063

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/519 (11%), Positives = 139/519 (26%), Gaps = 40/519 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               ++L  ++   G L           +  +P   P               +V++    
Sbjct: 11  PVLAIVLSIVLTIAGALA-----YFSLAVSEYPDIAPPT-------------VVIQATYP 52

Query: 64  DFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
                 +       +   +                 +  IT++F      +     V   
Sbjct: 53  GASAETVSQTVSTPIELEVNGVEDMLYMYSQATSDGSLNITVTFKPGTDVDKAQVLVQNR 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L    +++ +         +              +  S   IR   D +   E
Sbjct: 113 VALATPRLPEPVQRSGVSVRKSSPTQLGTIFLYSPDQRYDPLYVSNYAIRNVADVLKRIE 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP R+     + A +       N    G +     + +   
Sbjct: 173 GVGDINALGAREYSMRIWLDPERVASFGLSPADLIAAVRSQNTQLAGGVVAQAPIANQAF 232

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              LV                    +       +       R         +        
Sbjct: 233 QPNLV--------------FEGRLKRPEDFSDIVVKQGKDGRLVRLKDVARVEVGALAYA 278

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +            +   +   T+       A L        +  +          S
Sbjct: 279 TDSYMLRHPTIALQVLQQPGANAVATMAAVEKKMAELSRDFPKGIVYNIGYNPTAFIGDS 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV+ V+ + +   +  ++   SI ++++ T A +++LG ++   ++ 
Sbjct: 339 IHELVKTIYEAVVLVVFVVLLFLQGWRPSIIPILSIPVSLVGTFAAMAVLGYSINNLTLF 398

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATV 475
           G+VL +G+ VD+ I+V E +            +  +       A   I        + T 
Sbjct: 399 GLVLAVGIVVDNAIVVVENVERHLAAGAGPRDATLLTMKEVGGALFAITLVLCAVFVPTS 458

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            +    G   R F +T+ +S  IS FT++++  A+   +
Sbjct: 459 FIPGISGQFFRQFGVTIAVSTAISFFTSVTLAPALSAMM 497



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  I ++ + +  T    A+ G   N   +  ++  +G  V++ +VV + +    +
Sbjct: 364 WRPSIIPILSIPVSLVGTFAAMAVLGYSINNLTLFGLVLAVGIVVDNAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                   RD    ++ E  G     ++      +P +      G     F + +A    
Sbjct: 421 HLAAGAGPRDATLLTMKEVGGALFAITLVLCAVFVPTSFIPGISGQFFRQFGVTIAVSTA 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++  +S+ +A  +   +  
Sbjct: 481 ISFFTSVTLAPALSAMMLK 499



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 52/145 (35%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +  + + +          G + N+      + L+G +  + +++ +  R   
Sbjct: 910  SWSLPVSILLIVPMCLLAASLGVRALGQDVNILTQIGFIVLVGLAAKNAILIVEVAR--- 966

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L        + + ++  + L   V TS+A  + VLP+ +    G  +  +    + FG+
Sbjct: 967  QLEADGAELVEAVVEACVQRLRPIVMTSLAFILGVLPLVISEGAGAEMRQAVGAAVFFGM 1026

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +       + +     + 
Sbjct: 1027 IGVTFFGLLFTPVFYVMVRRLAMRK 1051


>gi|160900568|ref|YP_001566150.1| hydrophobe/amphiphile efflux-1 family protein [Delftia acidovorans
           SPH-1]
 gi|160366152|gb|ABX37765.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Delftia
           acidovorans SPH-1]
          Length = 1102

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 63/548 (11%), Positives = 144/548 (26%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GL+      +    +  +P   P + +                  
Sbjct: 29  RPIFAGVLSLLMLIAGLIA-----MGGLPISEYPEVAPPSVV---------VRAQYPGAN 74

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 75  PKVIAETVATPLEEQINGVEGMLYMGSQATSDGVMTLTVTFRLGTDPDKAQQMVQNRVSQ 134

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D +   E   
Sbjct: 135 AEPRLPEEVRRLGITTVKSAPDLTMVVHLVSPNQRYDINYLRNYAVLNVKDPLARIEGVG 194

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   + + +       N      + G          Q 
Sbjct: 195 QIQIFGGGDYAMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLPGVDMQL 254

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                      I                 +    A      
Sbjct: 255 SINAQGRLQSEE-------------DFGDIIVKSGADGAVTRLRDIGRLEMGAADYSLRS 301

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L           +          S   
Sbjct: 302 LLNNDPAVGMGVFQAPGSNALEISANVRKTMEALNKNMPEGLEYRIAYDPTQFVRASIES 361

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++VI T A+L LLG ++   S+ G+V
Sbjct: 362 VVHTLLEAIVLVVLVVILFLQTWRASIIPLLAVPVSVIGTFAVLHLLGFSINALSLFGLV 421

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +  +   V L F  
Sbjct: 422 LAIGIVVDDAIVVVENVERNIEAGLTPRNATYRAMREVSGPIIAIALVLVAVFVPLAFIS 481

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   ++R        +             
Sbjct: 482 GLTGQFYKQFAVTIAISTVISAINSLTLSPALAALLLRGHDAPKDALTRGMDRAFGWLFR 541

Query: 539 AIQFMRAR 546
               M  R
Sbjct: 542 GFNRMFHR 549



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 +  I  + + +   +    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 921  SLTLPIAIILIVPMGLLAAMTGVWLSGGDSNVFTQIGLIVLVGLSAKNAILIVEFARE-- 978

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + VLP+ +    G  +  +  + +  G+
Sbjct: 979  -LEFEGRTPIQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRRAMGVAVFSGM 1037

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +   +  +F+     + +  
Sbjct: 1038 IGVTAFGLFLTPVFYVLMRR 1057



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 82/232 (35%), Gaps = 17/232 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L +     +      G     +    +         + E ++ +I 
Sbjct: 289 RLEMGAADYSLRSLLNNDPAVGMGVFQAPGSNALEISANVRKTMEALNKNMPEGLEYRIA 348

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   ++   +V ++               W  ++  +  + + 
Sbjct: 349 YDPTQFVRASIESVVHTLLEAIVLVVLVVIL-----------FLQTWRASIIPLLAVPVS 397

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T     L G   N  ++  ++  IG  V+D +VV + + +N++     ++ R+   +
Sbjct: 398 VIGTFAVLHLLGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEA---GLTPRNATYR 454

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           ++ E  G  +  ++      +P+A      G     FA+ +A   V++A +S
Sbjct: 455 AMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYKQFAVTIAISTVISAINS 506


>gi|172063689|ref|YP_001811340.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           ambifaria MC40-6]
 gi|171996206|gb|ACB67124.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MC40-6]
          Length = 1063

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/519 (11%), Positives = 139/519 (26%), Gaps = 40/519 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               ++L  ++   G L           +  +P   P               +V++    
Sbjct: 11  PVLAIVLSIVLTIAGALA-----YFSLAVSEYPDIAPPT-------------VVIQATYP 52

Query: 64  DFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
                 +       +   +                 +  IT++F      +     V   
Sbjct: 53  GASAETVSQTVSTPIELEVNGVEDMLYMYSQATSDGSLNITVTFKPGTDVDKAQVLVQNR 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L    +++ +         +              +  S   IR   D +   E
Sbjct: 113 VALATPRLPEPVQRSGVSVRKSSPTQLGTIFLYSPDQRYDPLYVSNYAIRNVADVLKRIE 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP R+     + + +       N    G +     + +   
Sbjct: 173 GVGDINPLGAREYSMRIWLDPERVASFGLSPSDLIAAVRAQNTQLAGGVVAQAPITNQAF 232

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              L+                    +       +       R         I        
Sbjct: 233 QPNLI--------------FEGRLKRPEDFSDIVVKQGKDGRLVRLKDVARIEVGALAYA 278

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +            +   +   T+       A L        +  +          S
Sbjct: 279 TDSYMLRHPTIALQVLQQPGANAVATMAAVEKKMAELSQDFPRGIVYNIGYNPTAFIGDS 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV+ V+ + +   +  ++   SI ++++ T A +++LG ++   ++ 
Sbjct: 339 IHELVKTIYEAVVLVVFVVLLFLQGWRPSIIPILSIPVSLVGTFAAMAVLGYSINNLTLF 398

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATV 475
           G+VL +G+ VD+ I+V E +            +  +       A   I        + T 
Sbjct: 399 GLVLAVGIVVDNAIVVVENVERHLSTGAGPRDATLLTMKEVGGALFAITLVLCAVFVPTS 458

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            +    G   R F +T+ +S  IS FT++++  A+   I
Sbjct: 459 FIPGISGQFFRQFGVTIAVSTAISFFTSVTLAPALSAMI 497



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 53/133 (39%), Gaps = 6/133 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  I ++ + +  T    A+ G   N   +  ++  +G  V++ +VV + +    +
Sbjct: 364 WRPSIIPILSIPVSLVGTFAAMAVLGYSINNLTLFGLVLAVGIVVDNAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
             +T    RD    ++ E  G     ++      +P +      G     F + +A    
Sbjct: 421 HLSTGAGPRDATLLTMKEVGGALFAITLVLCAVFVPTSFIPGISGQFFRQFGVTIAVSTA 480

Query: 807 VAASSSIFIAAPI 819
           ++  +S+ +A  +
Sbjct: 481 ISFFTSVTLAPAL 493



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +  + + +          G + N+      + L+G +  + +++ +  R   
Sbjct: 910  SWSLPVSILLIVPMCLLAASLGVRALGQDVNILTQIGFIVLVGLAAKNAILIVEVAR--- 966

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    I   + + ++  + L   V TS+A  + VLP+ +    G  +  +    + FG+
Sbjct: 967  QLEADGIDLVEAVVEACVQRLRPIVMTSLAFILGVLPLVISEGAGAEMRQAVGAAVFFGM 1026

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +       + +     + 
Sbjct: 1027 IGVTFFGLLFTPVFYVMVRRLAMRK 1051


>gi|315655413|ref|ZP_07908313.1| protein-export membrane protein SecF [Mobiluncus curtisii ATCC
           51333]
 gi|315490353|gb|EFU79978.1| protein-export membrane protein SecF [Mobiluncus curtisii ATCC
           51333]
          Length = 371

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 133/312 (42%), Gaps = 14/312 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL- 584
                  L     +   ++ R   + +  +    S+  +   GLN  I+F GG +  V  
Sbjct: 4   YAQWGNALYSGKKSYGIIKNRRIPLTVGAILMAISVIGIAIFGLNPSIEFTGGAEFVVTN 63

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +        + +++  + + +     G     V+   QP D   + +        +  
Sbjct: 64  TVKNPPQQPAYNAVKAAGLNEQTKVAQMGTNGLRVQTSQQPNDVELKIQQELAKAYHV-- 121

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
                   +   +GP     + ++ +VG+++    + + +   F+ W  +  A+  L+ D
Sbjct: 122 ---DIKKVSKTSIGPSWGASVSKQALVGLLVFMGMIAVLLMAYFRTWTMSFSALFALLHD 178

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLI 761
              TLG FA   IE     +  +LT++GYS+ D VVV+D++R+N +     +   + +L 
Sbjct: 179 FLITLGVFAYTHIEITPATIIGLLTILGYSLYDTVVVFDKIRENTRDMFNQSRSKYNELA 238

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           + SIN+T+ RS+ TS+   + V  +        G S +   ++P+  G++V   SSIFIA
Sbjct: 239 NLSINQTMVRSINTSITGILPVSAILFLGAALLGTSTLLDISMPLFIGMIVGTFSSIFIA 298

Query: 817 APILLFIYDWRA 828
            P+L  I     
Sbjct: 299 TPMLTLIRGRSQ 310


>gi|91226383|ref|ZP_01261182.1| putative multidrug efflux membrane fusion protein [Vibrio
           alginolyticus 12G01]
 gi|91189197|gb|EAS75477.1| putative multidrug efflux membrane fusion protein [Vibrio
           alginolyticus 12G01]
          Length = 1046

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 72/687 (10%), Positives = 186/687 (27%), Gaps = 36/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++   +  +G++      L    +  +P   P                +     
Sbjct: 9   RPKFALVISLAMTLMGMIA-----LKVLPISEYPQISPTVIT---------VSTMYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++        +    +  + + F      +    +V   +  
Sbjct: 55  ADVVKKTVAQPIEAKVNGVEDMIYMSSVIGNDGSYTLRIYFRVGADGDMAQVRVNNLVAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  +  +    +    + +      +    +I  S       ++++   E   
Sbjct: 115 ATSSLPQEVNQIGVTVKKKSSDMLGVITLRSPKQSHDSIYLSNYADLNIVERLKRIEGMS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    +P++L  L  + + +       N        G          QY
Sbjct: 175 DITLLGKKDYSMRIWLNPNKLATLKLSASDVIGAIKTQNIQVAAGKIGGMPAPGDQQYQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++ K  ++                +    I                 +           
Sbjct: 235 VLQTKGRLTSAE-------------EFENIIIRASKKGSLIRLKDVARVEVGAQGYEADG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +    +E                 +  +   +      S   
Sbjct: 282 RMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVYDIAYDSTEYVETSIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV  V+++ +   +  ++   +I +++I T A++ ++G T+   S+ G++
Sbjct: 342 VYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIMGVMGMTINTISLFGLI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +       +           +  + +  L   V +   
Sbjct: 402 LAIGIVVDDAIIVVENVERVIHEEHLDPIPATIQAMKEVTGPVLATTLILLAVFVPVALL 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFL 533
            G + R    FA+T+ +S+LIS   A+++  A+   +               N       
Sbjct: 462 PGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLKSTHSQPIAPLRAFNRGFEAIT 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 + F+  R           I  +   F    +  +  +      V    P   ++
Sbjct: 522 RKYQGLVGFLSRRIVLSIGVYGALIAVLAFAFMTVPSSFVPNEDKGVFMVEMRLPDAAAL 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            R+     +  D   Q    E    V        +      + ++K           +  
Sbjct: 582 QRTAPLMKKYVDELKQMEGVENVVSVAGFSVINMASIPNSGMLIIKLDNWSKRKDPELHQ 641

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAM 680
             ++                + +  A+
Sbjct: 642 RALMNKVNQMLNSTPDAASFVFATPAI 668



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  +   +  +     L   Q    +++     ++   K+  +  P   + 
Sbjct: 266 DVARVEVGAQGYEADGRMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +      +     I +    ++I+ + +   +++  + W   +     + + I  T    
Sbjct: 326 DIAYDSTEYVETSIDEVYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G+  N  ++  ++  IG  V+D ++V + +     ++   +       +++ E  G 
Sbjct: 386 GVMGMTINTISLFGLILAIGIVVDDAIIVVENV--ERVIHEEHLDPIPATIQAMKEVTGP 443

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + T++      +P+A+  G        FA+ +   ++++A +++ +   +   +  
Sbjct: 444 VLATTLILLAVFVPVALLPGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLK 500



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 77/279 (27%), Gaps = 10/279 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                  +                    ++  +        ++ +   D            
Sbjct: 763  RSYQVKVQAEEQYRDNIDDINHLFVRSSSGKMVSLATLVKVKPIFGPDTLSNYNMFSSAT 822

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +         S    + +E +  +                  K          +   +S 
Sbjct: 823  VNGAPAPGYSSGDVVKAIEKLAAESLPSGYSYEWSGMTYQEMKAGNM----APIAFALSL 878

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +   +++  +++ W      +  + + I   +G   L G  F+L     V+ LIG S   
Sbjct: 879  LFTYLFLVAQYESWTIPAAVMMAVPVAILGAMGTLLLVGQPFDLYVQIGVVILIGMSAKV 938

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ +  +  +      +S  D   ++          T+ A    V P+ +    G + 
Sbjct: 939  AILIVEFAK--VLREEKGLSIIDAAKEAARIRFRAVQMTAFAFIWGVFPLVIASGAGAAS 996

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              S    +  G++++      +     + +   R K  R
Sbjct: 997  RHSLGFAVFGGMILSTFVGTLLTPVFFVMMQSLREKFKR 1035


>gi|332087257|gb|EGI92390.1| inner membrane domain protein [Shigella boydii 5216-82]
          Length = 468

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 54/487 (11%), Positives = 130/487 (26%), Gaps = 38/487 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +        L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLVELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGG 482
            + FFGG
Sbjct: 455 PMAFFGG 461



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 74/206 (35%), Gaps = 3/206 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLVELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV 793
             G  V  +M      +PMA +GGS 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGST 463


>gi|307822819|ref|ZP_07653050.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacter tundripaludum SV96]
 gi|307736423|gb|EFO07269.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacter tundripaludum SV96]
          Length = 1045

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/686 (11%), Positives = 188/686 (27%), Gaps = 46/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+  +I   GLL      L Q  + +FP   P               + +    
Sbjct: 9   RPIFAAIISIVIVMAGLLA-----LRQLPIAQFPDISPP-------------QIQVSAMY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQNKIT---LSFADSRFKENIADKVTL 117
                  +       +   +   E +   +     N      + F      +     V  
Sbjct: 51  PGASAETVAQTIAAPIEQQVNGAENMLYMTSTSSSNGSLGLSIVFDIGTDIDKAQIDVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   ++L  + ++  +  T      +++               S       +D++   
Sbjct: 111 RVKMAEAQLPDEVRRGGVSVTKSTSSILLMVAIKS-DGRYDPTYVSNYASLHVLDKLKQI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P  +  L  TT+ +       N        G +      
Sbjct: 170 PGANQVAPMGSSDYAMRIWLKPDNMAHLGITTSDIRNAISQQNTQFAVGQIGQKPTSQPV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    I                 +       
Sbjct: 230 SLTLPIAAEGRLT-------------DPKEFEDIILRANSDGAAIRLRDVAKVELGAQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +              L A         +          
Sbjct: 277 DMLTRLNGDNATLIAVYQQPGANALDVAAQVRATMDRLSATFPAGISYGIPYDTTEFVEI 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+ V+F+ +   +  L+   ++ +++I TLA + +LG ++   ++
Sbjct: 337 SIEEVIHTLFEAIILVIAVVFLFLQNWRATLIPTLAVPVSIIGTLAGMYILGFSVNTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IGL VD  I+V E +    R+       +     S     +  + +  +   + 
Sbjct: 397 FGMVLAIGLVVDDAIVVIENVERNMRELGLKGREAATHALSEVAGPVIATTLVLIAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      + FAIT+ +S+ +S   A+++  A+   +I+  + +   +       L
Sbjct: 457 VSFLGGMTGQLYKQFAITIAISVALSAIVALTLSPALAAILIKPTEHQKPRLFQWFDATL 516

Query: 534 -----IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                         +R    G+ + +   +  + L      ++      G    V+    
Sbjct: 517 EKATQRYLNGIRWLLRHTAVGIALYLCMILAIVGLFKIVPTSFVPPEDQGTLFTVVMLPD 576

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                    +       +       +   +  +    G +     VL +  KK  + V  
Sbjct: 577 AASLDRTGTVVQQVEALVKNNPALRDIASITGMNLMDGGNATNAGVLFLAMKKWKDRVKP 636

Query: 649 STIQNTEIVGPKISRELIRKGIVGVI 674
                  +         I++ +V V+
Sbjct: 637 ELQAENVLGSLMQQASSIKEALVMVM 662



 Score = 85.5 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 89/235 (37%), Gaps = 6/235 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  D+  +        +   Q    +++     +     +++   P     
Sbjct: 265 DVAKVELGAQSYDMLTRLNGDNATLIAVYQQPGANALDVAAQVRATMDRLSATFPAGISY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  +     I + I  +  + I ++  +++  + W   L     + + I  TL   
Sbjct: 325 GIPYDTTEFVEISIEEVIHTLFEAIILVIAVVFLFLQNWRATLIPTLAVPVSIIGTLAGM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   N   +  ++  IG  V+D +VV + + +NM+     +  R+    +++E  G 
Sbjct: 385 YILGFSVNTLTLFGMVLAIGLVVDDAIVVIENVERNMREL--GLKGREAATHALSEVAGP 442

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            + T++      LP++  G   G +   FAI +A  + ++A  ++ ++  +   +
Sbjct: 443 VIATTLVLIAVFLPVSFLGGMTGQLYKQFAITIAISVALSAIVALTLSPALAAIL 497



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 59/162 (36%), Gaps = 7/162 (4%)

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I   I + + +  ++ +       + ++   +           ++ ++     ++TLI  
Sbjct: 874  IYGIIMVFLILAAQYERLVLPFAVMLSVPFGLFGAFLVVWASHMQDDVYFQIGLVTLIAL 933

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +        +   ++  D   ++        + TS +  + VLP+ +    
Sbjct: 934  SAKNAILIIEFA---SLKHEQGMNVVDAALEACRLRFRPILMTSFSFILGVLPLVLSTGA 990

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G +   S  + +  G+V A   ++F      + +   R   A
Sbjct: 991  GANSRHSIGVGIMGGMVSATLLAVFFVPLFFVLLEGIRVNRA 1032


>gi|291542910|emb|CBL16020.1| Preprotein translocase subunit SecF [Ruminococcus bromii L2-63]
          Length = 341

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/302 (21%), Positives = 131/302 (43%), Gaps = 13/302 (4%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I F+  +    GIS+   I  I   F  G    I F GG  L    +  ++ S +  
Sbjct: 28  HKIIDFVGHKKIFFGISLAIIIIGIVCNFIFGTQLDIQFSGGATLKFSYSGEINQSELTD 87

Query: 597 NLESLQIGDISFQNFDGE---KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ- 652
            ++     D     +  +    +         G+   +T + + ++  + +  P +  + 
Sbjct: 88  FIQVETTEDRITTTYAQDLMGDSGTTVTVQFSGNDSIKTDIQKNLESDLQKKYPDNNFKC 147

Query: 653 -NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILDITKT 707
             +  V   +    + K +  V I+A+ M++Y+ IRFK        + A+  L  D+   
Sbjct: 148 LESNSVDASMGFSFLLKCLTAVAIAAVLMVLYVTIRFKKIGGLSAGVMALVALFHDVAMI 207

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
              + +F +  + + +A VL ++GYS+ND +V+YDR+R+  KL  +      + + S  +
Sbjct: 208 YFMYVIFQMPIDASFIAVVLMILGYSLNDTIVIYDRVREEKKLVGSKTDVGKIFNLSCTK 267

Query: 768 TLGRSVYTSMAAFISVLPMA----VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            + R++ TS+    ++L +      +  + +  FA+PM  GI+    SSI IA P+ +  
Sbjct: 268 CIKRTIMTSVTTLSAILVVYAVACAFNITSVQGFALPMIIGIISGCYSSICIAGPLWVMW 327

Query: 824 YD 825
             
Sbjct: 328 QR 329


>gi|237751573|ref|ZP_04582053.1| export protein [Helicobacter bilis ATCC 43879]
 gi|229372939|gb|EEO23330.1| export protein [Helicobacter bilis ATCC 43879]
          Length = 552

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 287/542 (52%), Gaps = 32/542 (5%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           + ++ + + CC G+  ++P+F   S   ++P      +I+LGLDL+GG  L+L+VD ++ 
Sbjct: 14  YRLLAFILACCFGIFFSIPSFFQDS--SKYPFFDGYKKITLGLDLQGGLSLLLDVDVNEA 71

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V         +L+    K+ I +  +R   + I+    DS   +++   ++         
Sbjct: 72  VGNKYSSMLSDLKHQTDKKNIFINKLRMQGDSISFILLDSSRTKDMESILSNM------- 124

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                 + +  + +    +I L++  I +V  +A++Q++  IR R+   G++E  + R G
Sbjct: 125 ------EGVAWSQSGNTFNIALNEEAIKKVQKNALDQAIFTIRNRLSGFGLTEPNVLREG 178

Query: 186 SHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLPNNSKKGFMFGV------------ 230
            ++I +++PG Q      RL +L+   A++ F  V  + +++     V            
Sbjct: 179 INQIRVEMPGAQSEEEQKRLIKLISQNAQLEFMAVDEDLARRMMNGEVISDEEAMRYNSV 238

Query: 231 -RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                +++  +  ++    + G  +  A +  D   +   V    D  GA  F + T  N
Sbjct: 239 LLPYAENEMAKLPLKAVPILDGSSIVKADSTIDENKNDA-VSFVLDSKGAEIFGDFTGRN 297

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           I K LA+VLD R+++AP INQ I  G   I+G+F  + A  LA  LR+G+L   ++++E+
Sbjct: 298 IKKRLAIVLDKRIISAPSINQRIGGGNGIITGSFDRKAASDLAIALRSGALLAPVSVIEK 357

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG  LG+DSI     A+++G +L+V FMIV Y   G+ A  ++ +N+ L +A+++L  
Sbjct: 358 RVVGPSLGADSIQASVIALISGFILVVGFMIVYYAMAGVFASLALVINLFLIIAVMALFD 417

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  +    V  SL +G+  A   IFD+NIT
Sbjct: 418 ATLTLPGMAGIVLTVGMAVDANIIINERIREGLKSGMGVIKSLRIGYENASRAIFDANIT 477

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G G ++GFAIT G+ IL S+ TAI     + +++    +          
Sbjct: 478 SLIASVLLYVYGTGVIKGFAITTGIGILASIVTAIIGTHGIYLWLGNRIERSKNLAFWFG 537

Query: 530 RF 531
             
Sbjct: 538 IK 539



 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 81/176 (46%), Gaps = 4/176 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+  ++ +I   I ++ ++ + +     + A   L++++   +   ALF   
Sbjct: 361 GPSLGADSIQASVIALISGFILVVGFMIVYYAM-AGVFASLALVINLFLIIAVMALFDAT 419

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ +K   + +     +              ++
Sbjct: 420 LTLPGMAGIVLTVGMAVDANIIINERIREGLK---SGMGVIKSLRIGYENASRAIFDANI 476

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            + I+ + + V+G  VI  FAI    GI+ +  ++I     I L++ +   ++  +
Sbjct: 477 TSLIASVLLYVYGTGVIKGFAITTGIGILASIVTAIIGTHGIYLWLGNRIERSKNL 532


>gi|186473449|ref|YP_001860791.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           phymatum STM815]
 gi|184195781|gb|ACC73745.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phymatum STM815]
          Length = 1061

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 72/548 (13%), Positives = 157/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+        Q  +  +P  +P + +          H       
Sbjct: 10  RPIFAGVLSVLILLAGLIAVF-----QLPISEYPEVVPPSVV---------VHAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAEAVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTNPDLATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGVTTIKSSPTLTMVVHLISPNDRYDMTYLRNYALLNVKDRLERIKGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   T  ++       N      + G          Q 
Sbjct: 176 QVQLWGAGDYSMRVWLDPQKVAQRNLTAMEVVSAIREQNIQVAAGVIGASPSVPGTALQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +          +      I    +      
Sbjct: 236 SVNARGRL-------------KTESEFGDIVVKTAPDGAVTYLRDIARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +        L A         +          S   
Sbjct: 283 LLDNKPAVAMAINQSPGANSLQISDEVRQTMKELSADFPAGVEYRIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGLSARDATYKAMQEVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   ++R    K   +  L    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAMLLRGHGAKEDWLTRLMNRLLGRFFA 522

Query: 539 AIQFMRAR 546
           A   +  R
Sbjct: 523 AFNKVFHR 530



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L   + N+     ++ L+G +  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSVLSALTGVWLTQGDNNIFTQIGLMVLVGLASKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGRTPLQAAIEASRMRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 91/253 (35%), Gaps = 12/253 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V++
Sbjct: 252 IVVKTAPDGAVTYLRDIARIELAASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRQ 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         E        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 312 TMKELSADFP-AGVEYRIVYDPTQFVRSSIEAVVHTLLEAIALVVIVVIVFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+    + +
Sbjct: 371 PLIAVPVSIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ESGL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIVVAASSS 812
           S RD   K++ E  G  +  ++   A    L       G     FA+ +A   V++A +S
Sbjct: 428 SARDATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTVISAFNS 487

Query: 813 IFIAAPILLFIYD 825
           + ++  +   +  
Sbjct: 488 LTLSPALSAMLLR 500


>gi|94676605|ref|YP_589026.1| protein-export membrane protein SecD [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
 gi|94219755|gb|ABF13914.1| protein-export membrane protein SecD [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 612

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 160/520 (30%), Positives = 274/520 (52%), Gaps = 35/520 (6%)

Query: 30  SMLDRFPSAMP---KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    PS +       I LGLDLRGG H ++E+D +  +N   +   D     L+K  I
Sbjct: 104 NLAPAVPSWLTMIGALPIKLGLDLRGGVHFLIEIDMNTVLNNIHKQVIDVFIQELRKNNI 163

Query: 87  GVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S+ +I N  + ++F +S   +    K+    + +           L+    +  I I
Sbjct: 164 PYTSISKINNYGSKVNFLNSSICDEALAKLMSIHRDIA----------LIKKGKKYSIEI 213

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            L  N +    + AI+Q++ I+R RI+++GI+E  IQR G + I+++LPG QD +R +++
Sbjct: 214 YLLDNKLHAASNLAIQQNINILRNRINRLGIAEPLIQRQGVNSIVVELPGIQDTARAKEI 273

Query: 206 LGTTAKMSFHKVL--PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           +G TA + F  V    +                +G   L+  +V ++G H+         
Sbjct: 274 IGATAMLEFRLVNEEQSEEHSKITSNSEIKFTRNGTPILLYKQVLLTGDHITN-ATFSTD 332

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI--------------- 308
           + ++P V+I+ D  G +     T+DNI K +A++      ++  I               
Sbjct: 333 EYNQPQVNITLDHQGGKIMSNFTKDNINKLMAILFIEYKNSSDNIKDNNLFLKQEEVINV 392

Query: 309 --NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              Q+  S   +I+G    + A  L+ +LRAG+L   + IVEE  +G  LG  +I +G  
Sbjct: 393 ATIQSHISNMFRITGLNNRQEARNLSLLLRAGALMAPIKIVEECTIGPTLGMQNINQGLK 452

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL-TLPSIAGIVLGIG 425
           A + GL+  VLFM++ Y K+G++A  ++  N+IL + ++SLL   + T+P IAGIVL + 
Sbjct: 453 ACLWGLIAAVLFMVIRYHKFGIIATIALIANMILIIGMMSLLPGVILTMPGIAGIVLTLA 512

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +AVD+N+L+ ERI+EE  K +S+  ++  G+ RA+S+I D+NIT +I  ++L+ FG G++
Sbjct: 513 VAVDANVLIYERIKEELSKERSIQQAIYQGYRRAFSSIIDANITTIITAIILYEFGTGSI 572

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           +GFAIT  + I  SMFTAI   RA++  +   K +  + I
Sbjct: 573 KGFAITTIIGIATSMFTAILGTRAIVNLLYGNKLIDKLSI 612



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/173 (19%), Positives = 80/173 (46%), Gaps = 5/173 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I +G+   +   IA ++++ IR+   F + A   LI ++   +G  +L  
Sbjct: 437 TIGPTLGMQNINQGLKACLWGLIAAVLFMVIRYH-KFGIIATIALIANMILIIGMMSLLP 495

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G+   +  +A ++  +  +V+  V++Y+R+++ +   +   S +  I +         + 
Sbjct: 496 GVILTMPGIAGIVLTLAVAVDANVLIYERIKEEL---SKERSIQQAIYQGYRRAFSSIID 552

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++   I+ + +  +G   I  FAI    GI  +  ++I     I+  +Y  +
Sbjct: 553 ANITTIITAIILYEFGTGSIKGFAITTIIGIATSMFTAILGTRAIVNLLYGNK 605


>gi|225423361|gb|ACN91189.1| CmeB [Campylobacter coli]
          Length = 1040

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/683 (11%), Positives = 184/683 (26%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS                        +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLVNLPIEQYPSLTSPTV---------KVSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +        +T+ F            V   +  
Sbjct: 55  AQTIASTVASPIEDAINGTDNMIYMDSTSSSSGIMNLTVYFDIGTDPNQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++            +A++    I    ID++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSNGSMNAVDVYNYITLNIIDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGATATDVIAAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QSPSEFENIILRANNDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        I + ++  +   T +        L           +        + S   
Sbjct: 282 RLNGNDAVPIIINLQSGANALNTAKLVEAKMQELSKSFPEGLEYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L LLG ++ L ++  ++
Sbjct: 342 VIKTFVEALILVIIVMYMFLKNFRSTLIPMIAVPVSLLGTFAGLYLLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E I       +  +V  +         S I    +      + + F
Sbjct: 402 LAIGIVVDDAIIVVENIDRLLHENEKITVKDAAVQAMQEVSSPIISIVLVLCAVFIPVSF 461

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSRFF 532
                G   R FA+T+ +S+ IS F A+++  ++    +R  + K        N    + 
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNESKPFYIVQKFNDFFDWS 521

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                  + +M  R     +     + +I  L+       +  +    + +        S
Sbjct: 522 TSIFSAGVAYMLKRTIRFVLIFCIMLGAIFYLYKQVPGSLVPEEDQGLM-IGIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHMSQEILKTNGVKDAMAMIGFDLFTSSLKENAAAMFISLKDWKDRNISAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
                  K          V + +
Sbjct: 641 KVTSELNKKFAFDQNSSSVFIGL 663



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/437 (10%), Positives = 135/437 (30%), Gaps = 17/437 (3%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM---GFSRAYS 461
           +  + +T +   I  + +   +  D N    +     +     +  ++        +  S
Sbjct: 76  MIYMDSTSSSSGIMNLTVYFDIGTDPNQATIDVNNRISAATAKMPDAVKKLGVTVRKTSS 135

Query: 462 TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           T   +         +        +    I     +           R   + I     + 
Sbjct: 136 TTLAAISMYSSNGSMNAVDVYNYITLNIIDELKRVPGVGDANAIGNRNYSLRIWLKPDLL 195

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           +      +      +    Q+   +  G       S     +     L    +F+  I  
Sbjct: 196 NKFGATATDVIAAVNDQNAQYATGK-IGEEPVTQKSPYVYSITMQGRLQSPSEFENIILR 254

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                  + L  V       Q      +    +   ++       +++   +++E   ++
Sbjct: 255 ANNDGSFLRLKDVADVEIGSQQYSSQGRLNGNDAVPIIINLQSGANALNTAKLVEAKMQE 314

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           +++  P            K   E I++ I   + + I ++I +++  K +   L  +  +
Sbjct: 315 LSKSFPEGLEYKIPYDTTKFVIESIKEVIKTFVEALILVIIVMYMFLKNFRSTLIPMIAV 374

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T     L G   NL  + A++  IG  V+D ++V + + + +      I+ +D 
Sbjct: 375 PVSLLGTFAGLYLLGFSINLLTLFALILAIGIVVDDAIIVVENIDRLLHENEK-ITVKDA 433

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSI 813
             +++ E     +    +  + +  + +       + G +   FA+ +A  + ++   ++
Sbjct: 434 AVQAMQEVSSPII----SIVLVLCAVFIPVSFISGFVGEIQRQFALTLAISVTISGFVAL 489

Query: 814 FIAAPILLFIYDWRAKN 830
            +   +           
Sbjct: 490 TLTPSLCALFLRRNESK 506



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 86/256 (33%), Gaps = 15/256 (5%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            N+ + L    +   S    D+   N         +         A   + ++ K+ + + 
Sbjct: 790  NKMIPLDSFLTLQRSSGPDDVKRFNLFPAAQIQGQPAPGYTSGQAIETISQVAKEILGDD 849

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
              ++   +                    I+  + + + +  ++ +W   L  +T +   +
Sbjct: 850  YSIAWSGSAYQEVSSKG-----TANYAFILGMVFVFLILAAQYERWLIPLAVVTAVPFAV 904

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              +  F  L G   ++     +L LIG S  + +++ +   +    +       +   ++
Sbjct: 905  FGSFLFVYLRGFTNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKEIFEATVEA 962

Query: 765  INETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                    + TS+A    VLPM      G +   S    +  G++ A++ +IF       
Sbjct: 963  AKLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFY 1022

Query: 822  FIYDWR----AKNARI 833
             + ++      K  ++
Sbjct: 1023 LLENFNEWLDKKRGKV 1038



 Score = 50.8 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 73/538 (13%), Positives = 153/538 (28%), Gaps = 39/538 (7%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M       +L   I    +         Q      P       I + ++L   S L   +
Sbjct: 532  MLKRTIRFVLIFCIMLGAIFY----LYKQVPGSLVPEEDQGLMIGI-INLPSASALHRTI 586

Query: 61   DEDDFVNGFL--QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
             E D ++  +       +  + +    +   S+++    + +S  D + +   ADKVT  
Sbjct: 587  SEVDHMSQEILKTNGVKDAMAMI-GFDLFTSSLKENAAAMFISLKDWKDRNISADKVTSE 645

Query: 119  LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI-GIS 177
            L    +         + +            +           +Q  E + + +       
Sbjct: 646  LNKKFAFDQNSSSVFIGLPPIPGLSITGGFEMYAQNKSGKTYDQIQEDVNKLVTAANQRK 705

Query: 178  ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
            E T  R        Q     D  +L+ L      +                         
Sbjct: 706  ELTRVRTTLDTTFPQYKLIIDRDKLKYLNLNMQDVFNTMNATIG---------------- 749

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               Y V D   +         A  D +  +  +   F      +   +      +  +  
Sbjct: 750  --TYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDNKMIPLDSFLTLQRSSGP 807

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             D +        Q         +    IET   +A  +      I  +    + V +   
Sbjct: 808  DDVKRFNLFPAAQIQGQPAPGYTSGQAIETISQVAKEILGDDYSIAWSGSAYQEVSSKGT 867

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
            ++       A + G+V + L +   Y      L    ++   V  +   + L G T  + 
Sbjct: 868  ANY------AFILGMVFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLFVYLRGFTNDIY 921

Query: 416  SIAGIVLGIGLAVDSNILVNER-IREENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIA 473
               G++L IGL+  + IL+ E  + E  +K + +F + ++    R    I  S       
Sbjct: 922  FQTGLLLLIGLSAKNAILIVEFAMEERFKKGKEIFEATVEAAKLRFRPIIMTSLAFTFGV 981

Query: 474  TVVLFFFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
              ++F  G G+         +   ++ +   AI  V      +  + +        + 
Sbjct: 982  LPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEWLDKKRGKVH 1039


>gi|120599124|ref|YP_963698.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
 gi|146292805|ref|YP_001183229.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
 gi|120559217|gb|ABM25144.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
 gi|145564495|gb|ABP75430.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
          Length = 1031

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 72/629 (11%), Positives = 177/629 (28%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVFASVISLLVVAFGLVS-----FDKLPLREYPNIDPPIV---------SIETNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F  SR  E+ A+ V   + G
Sbjct: 55  SAAVVESRITQLIEDRISGVEGIRHVSSSSSDGRSSVTLEFDISRNIEDAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +      +  I+      D      +E +    R   D++ + +   
Sbjct: 115 LLDNLPEEADPPEVQKANGGDEVIMWLNLVSDN--MTTLELTDYTNRYLSDRLSVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 RIRIGGGKVYAMRIWLDRQALASRSLTVADVEAALRAENVELPAGSIESKERHFTVRLE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RSYRTAEDFANLVLTQGNDGYLVKLGDVAKVEIGSEEERIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +          L   +               +      S   
Sbjct: 274 RGNKEAMIGLGVSKQSTANTLEVARAVNALIDKINPTLPAGMSIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFIAMILVIIVIYLFLGSARAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEEGDSPLKAAYLGAREVAFAVIATTLVLVSVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+ M  +++ S   A+++   M   +          ++ +D    S    
Sbjct: 454 GDLGKLFKEFAVAMSAAVIFSSIVALTLSPMMCSKLLKPATQDSWLVRKVDGIMASIARG 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     +     V +          +          + +G + L V   +      
Sbjct: 514 YQTSLQKAMAKPLLMSVLVLCALGSSFFLVQKVPQEFAPQEDRGSLFLMVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           + S +  ++   +   +    K  L+R  
Sbjct: 574 IESYMTEVENRLMPLVDAGDIKRLLIRAP 602



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 11/216 (5%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             +    +++   R +  +  KI   +P                  I++    + I+ I 
Sbjct: 285 VSKQSTANTLEVARAVNALIDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFIAMIL 344

Query: 680 MLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           ++I I          L    T+ + +  T       G   NL  + A++  IG  V+D +
Sbjct: 345 VIIVIYLFLGSARAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIG 795
           V+ + +    +      S          E     + T++      +P+    G    +  
Sbjct: 405 VMLENIH---RRIEEGDSPLKAAYLGAREVAFAVIATTLVLVSVFMPITFLEGDLGKLFK 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            FA+ M+  ++    SSI +A  +   +     K A
Sbjct: 462 EFAVAMSAAVI---FSSI-VALTLSPMMCSKLLKPA 493



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L      G   N+ +   ++ L+G 
Sbjct: 860  LLALGIVFLVLAAQFESYIHPIVIMLTVPLATVGALAGLWFTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++ ++ L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVDFDRAIIQAASQRLRPILMTGITTAAGAIPLVMAVGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            G        + +  GI++A   +IF+   
Sbjct: 977  GAETRFVIGVVVLSGILLATLFTIFVIPT 1005


>gi|83310974|ref|YP_421238.1| cation/multidrug efflux pump [Magnetospirillum magneticum AMB-1]
 gi|82945815|dbj|BAE50679.1| Cation/multidrug efflux pump [Magnetospirillum magneticum AMB-1]
          Length = 1052

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/585 (11%), Positives = 155/585 (26%), Gaps = 34/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ ++I   GL+  L        +  +P  +P + I                  
Sbjct: 10  RPIFAGVISTVILLAGLISML-----LLPISEYPEVVPPSVI---------VKAQFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T+SF      +     V   +  
Sbjct: 56  PKVIAQTVATPLEEQINGVENMLYMFSQAASDGTMTLTVSFKIGTDPDLATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    +   + T        ++            +      +    DQ+   +   
Sbjct: 116 ALPRLPEVTRSLGVTTVKSSPDLTMVVHLTSPNERYDMLYLRNYALLNVKDQLAKIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++ +   T  ++       N      + G          Q 
Sbjct: 176 SVQLFGSGDYAMRIWLDPEKVAERSMTADEVVAAIRRQNVQVAAGVIGGPPYGSGVELQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                     I                 +    A      
Sbjct: 236 PINAQGRLTDADQFAE--------------IIIKRDSGVVTRLKDVARVEIDAAQYGLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +            A L+          +         GS   
Sbjct: 282 LLDNKPAVAIPVFQSPGSNAIEISNQVRAAMAELKKNFPEGLDYAIVYDPTVFVRGSIEA 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T A++ + G ++   S+ G+V
Sbjct: 342 VVHTLLEAVALVVLVVILFLQTWRASIIPLLAVPISIVGTFAVMHIFGFSINALSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +      V + F  
Sbjct: 402 LAIGIVVDDAIVVVENVERNIENGLSPRDATIKAMGEVTGPIIAIALVLCAVFVPIAFIS 461

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+  S +IS F ++++  A+ + +++        +       F     
Sbjct: 462 GLTGQFYRQFALTIAFSTVISAFNSLTLSPALAVTLLKGHGAPKDALTRGMDRVFGRFFA 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F                     +  + L  G  + G   +
Sbjct: 522 GFNRVFHGGSHAYGRGVTGILGRKSAAMLIYLLLLGATYVGFQAV 566



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 72/203 (35%), Gaps = 7/203 (3%)

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             T   +    +I +      +                  ++   I  + + + +  +++ 
Sbjct: 842  STGQAQAAMTRILDETLPKGMGYEWTELTYQQILAGNTAMLVFPICVLLVFLVLAAQYES 901

Query: 691  YFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             F   AI  ++ + +   +    L G + N+     +  LIG +  + +++ +  R+   
Sbjct: 902  LFLPAAIILIVPMCLLSAITGVWLTGGDNNMFTQIGLFVLIGLACKNAILIVEFARE--- 958

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
            L        +   ++ +  L   + TS A  + V+P+ +    G  +  +  + + FG++
Sbjct: 959  LEIAGKGTVEAAVEAAHLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFFGML 1018

Query: 807  VAASSSIFIAAPILLFIYDWRAK 829
                  +F+     + +     +
Sbjct: 1019 GVTFFGLFLTPVFYVLMRALEKR 1041



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 90/245 (36%), Gaps = 17/245 (6%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     I      G     +  Q +   +  +    E +   I 
Sbjct: 269 RVEIDAAQYGLRSLLDNKPAVAIPVFQSPGSNAIEISNQVRAAMAELKKNFPEGLDYAIV 328

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
               +    + E V   +   +    +V ++               W  ++  +  + + 
Sbjct: 329 YDPTVFVRGSIEAVVHTLLEAVALVVLVVIL-----------FLQTWRASIIPLLAVPIS 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+      +S RD   K
Sbjct: 378 IVGTFAVMHIFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI---ENGLSPRDATIK 434

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ E  G  +  ++      +P+A      G     FA+ +AF  V++A +S+ ++  + 
Sbjct: 435 AMGEVTGPIIAIALVLCAVFVPIAFISGLTGQFYRQFALTIAFSTVISAFNSLTLSPALA 494

Query: 821 LFIYD 825
           + +  
Sbjct: 495 VTLLK 499


>gi|319763074|ref|YP_004127011.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Alicycliphilus denitrificans BC]
 gi|317117635|gb|ADV00124.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Alicycliphilus denitrificans BC]
          Length = 1047

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/548 (12%), Positives = 155/548 (28%), Gaps = 34/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L           L+ +P   P              +       
Sbjct: 8   RPVFAWVLSIVIMLAGGLSIF-----TLPLEMYPEIAPPRVT---------LNTTYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++    L +      +     +++ TL+FA     +    +    LQG
Sbjct: 54  AETVENSVTQVIEQQLKGLDRLLYMSSTSDSAGRSRTTLTFAPGANIDVAQVQAQNKLQG 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L    K   +      +  +V             +     +    +D I   +   
Sbjct: 114 AMNRLPDAVKSRGVFVNKGGQDYLVTYVFTSPDPNVSQVTIGDYLTSNVVDVIARVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+ + +     + +       N        G            
Sbjct: 174 DVTVFGT-NYAMRIWMDPALMEKYALMPSDLVNALNAQNAQVSAGQLGTLPAVPGQMLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + +++ +              +    +                 +      +    
Sbjct: 233 TVTARSKLTSVQ-------------EFKDIVLKSAPDGSVVTMADVARVELAADSLTVRS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L           V          S   
Sbjct: 280 ILNGQPGAGLGIVLADGANAMQVADAVARKIAELAPYFPDGITGFVSSDTTPFVRASIKE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  L+   ++ + ++ TL +LS +G ++ + ++  +V
Sbjct: 340 VIKTLGEAMVLVTLVMFLFLQNFRATLIPAIAVPVVLLGTLGVLSAMGYSINMLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +           +    +T     V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEQGLPPKEATRKSMKEITPALVGIGLTLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
            G      R F+IT+  ++ +S+F A+++  A+    +      +++   PL        
Sbjct: 460 AGSVGVIYRQFSITIVAAMGLSVFVALTLTPALCASLLKPMAHERTVRRGPLGWVDRFFI 519

Query: 537 CIAIQFMR 544
                F R
Sbjct: 520 WFNHHFDR 527



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 84/235 (35%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V ++ V     +     +           L  +     +++     +     ++    P 
Sbjct: 260 VTMADVARVELAADSLTVRSILNGQPGAGLGIVLADGANAMQVADAVARKIAELAPYFPD 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I++ I  +  + + + + +++  + +   L     + + +  T
Sbjct: 320 GITGFVSSDTTPFVRASIKEVIKTLGEAMVLVTLVMFLFLQNFRATLIPAIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +  G   N+  + A++  IG  V+D +VV + +     +    +  ++   KS+ E
Sbjct: 380 LGVLSAMGYSINMLTMFALVLAIGLLVDDAIVVVENV--ERVMSEQGLPPKEATRKSMKE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
                V   +      +PMA + GSV      F+I +   + ++   ++ +   +
Sbjct: 438 ITPALVGIGLTLSAVFVPMAFFAGSVGVIYRQFSITIVAAMGLSVFVALTLTPAL 492



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 74/256 (28%), Gaps = 9/256 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +   Q  V       +        S   G      ++G     ++    PG S    
Sbjct: 780  MLPQDIAQWSVRNRDGQMVRFSAFATTSWGNGSPQLMRYNGSPALEMQANTPPGASSGDA 839

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                                   +   +   +      V ++   + +     +   W  
Sbjct: 840  MAAVERIMATMPPGIGFEWTGASLQERQSGSQAPMLYAVSILFVFLCLA---ALYESWSV 896

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                +  + L +   L      G+  ++     +LT +G +  + +++ +     ++L  
Sbjct: 897  PFSVMLAVPLGVIGALAATYGRGLANDVYFQVGLLTTVGLASKNAILIVEFA---VQLQE 953

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAA 809
               S  D   +++   L   + TS+A    VLP+      G     +    +  G+V + 
Sbjct: 954  RGRSLIDATVEAVRLRLRPILMTSLAFGFGVLPLAIGTGAGAGGRRAIGTAVLGGMVFST 1013

Query: 810  SSSIFIAAPILLFIYD 825
               IF      L +  
Sbjct: 1014 LLGIFFVPVFFLIVRR 1029


>gi|315656674|ref|ZP_07909561.1| protein-export membrane protein SecF [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492629|gb|EFU82233.1| protein-export membrane protein SecF [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 371

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 133/312 (42%), Gaps = 14/312 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL- 584
                  L     +   ++ R   + +  +    S+  +   GLN  I+F GG +  V  
Sbjct: 4   YAQWGNALYSGKKSYGIIKNRRIPLTVGAILMAISVIGIAIFGLNPSIEFTGGAEFVVTN 63

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +        + +++  + + +     G     V+   QP D   + +        +  
Sbjct: 64  TVKNPPQQPAYNAVKAAGLNEQTKVAQMGTNGLRVQTSQQPNDVELKIQQELAKSYHV-- 121

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
                   +   +GP     + ++ +VG+++    + + +   F+ W  +  A+  L+ D
Sbjct: 122 ---DIKKVSKTSIGPSWGASVSKQALVGLLVFMGMIAVLLMAYFRTWTMSFSALFALLHD 178

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLI 761
              TLG FA   IE     +  +LT++GYS+ D VVV+D++R+N +     +   + +L 
Sbjct: 179 FLITLGVFAYTHIEITPATIIGLLTILGYSLYDTVVVFDKIRENTRDMFNQSRSKYNELA 238

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           + SIN+T+ RS+ TS+   + V  +        G S +   ++P+  G++V   SSIFIA
Sbjct: 239 NLSINQTMVRSINTSITGILPVSAILFLGAALLGTSTLLDISMPLFIGMIVGTFSSIFIA 298

Query: 817 APILLFIYDWRA 828
            P+L  I     
Sbjct: 299 TPMLTLIRGRSQ 310


>gi|329850176|ref|ZP_08265022.1| inner membrane protein [Asticcacaulis biprosthecum C19]
 gi|328842087|gb|EGF91657.1| inner membrane protein [Asticcacaulis biprosthecum C19]
          Length = 1057

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/670 (10%), Positives = 170/670 (25%), Gaps = 41/670 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P              +           
Sbjct: 9   RPIFAWVVAIVIMMAGILSI-----TNLPVAQYPQIALP---------QVSVSAFYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    +        +        +TL+F      +    +V   LQ 
Sbjct: 55  AKTVEDSVTQIIEQQMKGIDGLLYMNSTSDSSGAASVTLTFKAGTDPDIAQVQVQNKLQS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  L         +++     D       +    +    +DQI   +   
Sbjct: 115 ATPLLPQEVQQQGLTVAKAAGGFLMVIGLYSDDATVTDHDLGDYMSSTLVDQISRVDGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 175 TIQNFGAQ-YAMRIWLDPNKLTSYNLTPTDVMGAIRAQNTQVSAGQLGGLPAVKGTALNA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++ I              +    I  +              I           
Sbjct: 234 TITAQSRLTTID-------------QFRQIIVKNSTTGAIVRLDDVARIELGAQQYGGTA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +   T +   +    L         ++V          S   
Sbjct: 281 KFNGRPATGIAISVATGANALDTAKAVKLKMDELAKQFPKGYHHVVPFDTTPFIELSIEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  ++   ++ + ++ T A+L+  G ++   ++ G+V
Sbjct: 341 VVKTLVEAVVLVFVVMFLFLQNWRATIIPTIAVPVVLLGTFAVLAAFGYSINTLTLFGLV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSL----DMGFSRAYSTIFDSNITALIATVVL 477
           L IGL VD  I+V E +     + +    +         + A   I        I     
Sbjct: 401 LAIGLLVDDAIVVVENVERVMHEEKLPPLAATIKSMNEITGALVGIALVLSAVFIPMAFF 460

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLS 529
               G   R F+IT+  ++ +S+  A+ +  A+   +         +       + N   
Sbjct: 461 GGSQGVIYRQFSITLVSAMALSVVVALVLTPALCATLLKPVTQERSQKGFFGWFNRNFDR 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                 + +     ++  W    +++  +  +            + +G +   V      
Sbjct: 521 MANSYRNTVGKILGQSVRWMAVFAVIVVVMGVLFTRIPSSFLPDEDQGILFTIVQLPPGA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                   L+ +          +            PG +     V         +    +
Sbjct: 581 TEERTNLVLDQVADHFKKDPAVESAFTVSGFSFSGPGQNAGMAFVRLKDFHDRKKADEKA 640

Query: 650 TIQNTEIVGP 659
                  +G 
Sbjct: 641 PAVAGRAMGA 650



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 81/253 (32%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  ++   +          + G    + ++G     ++    PG S  +           
Sbjct: 786  VRNDQGQMVPFTAFATSRWEFGSPRLERYNGAPAMNIQGMAAPGKSSGEAMAEMEKIIAT 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +   +   E     +  + I  + +L+   +   W   +  +  + L
Sbjct: 846  LPPGISYEWTGLSLQEKQSGAEAP--MLYALSIFVVFILL-AALYESWSIPIAIVMVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   L    L G+  ++    A+LT+IG S  + +++ +  +     +   +S  D   
Sbjct: 903  GVLGALLATMLRGLSNDIYLQVALLTIIGLSAKNAILIVEFAK---HNHERGMSLIDATL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +    L   + TS+A    + P+      G     +    +  GI+ A   +IF     
Sbjct: 960  AAARIRLRPIIMTSLAFTFGISPLFFANGAGSGSQNAIGTGLIGGILSATFLAIFFIPLF 1019

Query: 820  LLFIYDWRAKNAR 832
             + I      + +
Sbjct: 1020 FVIIERIFKADEK 1032



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +     + + +  T    A FG   N   +  ++  IG  V+D +VV + +     
Sbjct: 363 WRATIIPTIAVPVVLLGTFAVLAAFGYSINTLTLFGLVLAIGLLVDDAIVVVENV--ERV 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
           ++   +       KS+NE  G  V  ++      +PMA +GG   VI   F+I +   + 
Sbjct: 421 MHEEKLPPLAATIKSMNEITGALVGIALVLSAVFIPMAFFGGSQGVIYRQFSITLVSAMA 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++ +   +   +  
Sbjct: 481 LSVVVALVLTPALCATLLK 499


>gi|86144828|ref|ZP_01063160.1| putative protein-export membrane protein SecF [Vibrio sp. MED222]
 gi|85837727|gb|EAQ55839.1| putative protein-export membrane protein SecF [Vibrio sp. MED222]
          Length = 307

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 77/290 (26%), Positives = 149/290 (51%), Gaps = 7/290 (2%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                    R R     ISI+  + S+ L+   G N+G+DF GG+   V  +  V    +
Sbjct: 6   MTISNSSMTRLRKVMSVISIVLFMSSVMLVAVKGFNWGLDFTGGVVAEVQLSDQVTKDAL 65

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++ L++    D+       +  + +R       S         +   ++ +     + N+
Sbjct: 66  KTKLDTAFQQDVQVVGMAEQDRWTIRY------SQLTDAPQPNLVDALSSVSDQVKVLNS 119

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
            +VGP++ ++++ +G + V++  + +++Y+ +RF+W  ALGA+  +I D+T  LG FA  
Sbjct: 120 SVVGPQVGQDMVDQGGLAVLVCFLMIMLYLSVRFEWRLALGALAAIIYDVTLILGLFAFT 179

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             EFNLT +AAVL ++GYS+ND +++ DR+R+ ++   +     +L+++S+  T  R++ 
Sbjct: 180 QFEFNLTVLAAVLAILGYSLNDSIIIADRVREMLRGNPSG-DTDNLLNESVKATFSRTMV 238

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           TS    I+V  + + GG+ +  FAI +  GIV    SSI +   +   + 
Sbjct: 239 TSGTTLITVSALWLLGGAALQGFAIALVVGIVSGTWSSISVGITLPKLLG 288


>gi|254227779|ref|ZP_04921210.1| protein-export membrane protein SecF [Vibrio sp. Ex25]
 gi|262395821|ref|YP_003287674.1| protein-export membrane protein SecF [Vibrio sp. Ex25]
 gi|151939821|gb|EDN58648.1| protein-export membrane protein SecF [Vibrio sp. Ex25]
 gi|262339415|gb|ACY53209.1| protein-export membrane protein SecF [Vibrio sp. Ex25]
          Length = 300

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 146/290 (50%), Gaps = 7/290 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              + R +   +SI+ ++ ++  L   GLN G+DF GG+   V  ++ +    +   L+ 
Sbjct: 8   NIRKIRHFTTLVSIVLTVIALGALGFKGLNLGLDFTGGMVTEVKVDKSLTNHDLLDALQP 67

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 S      +  +L+R           +     V++ +  +     + +  IVG +
Sbjct: 68  KLGESTSVTRTGEDGRWLIRYSAPEEGQTLPS-----VEEVLKPVSHQVDVVSNSIVGAQ 122

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           + ++L  +G + ++I  +++L Y+  RF+W  A G++  L  D+   LGFFA+  +EFNL
Sbjct: 123 VGQDLFDQGGLALLICVLSILGYLCFRFEWRLASGSVFALAHDVIVVLGFFAVTQMEFNL 182

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T  AAVL ++GYS+ND +++ DR+R+ + +   S    D+ D+++  T  R++ TS    
Sbjct: 183 TVFAAVLAILGYSLNDSIIISDRIRE-LLIAKQSWKMEDINDQAVIATFSRTMVTSGTTL 241

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           I+V  + + GG+ +  F+  M  G++    SSI I   +L  ++    K+
Sbjct: 242 ITVGALWIMGGAPLAGFSTAMFIGVLSGTWSSISIGT-VLPELFKLEPKH 290


>gi|262041374|ref|ZP_06014579.1| integral transmembrane protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259041267|gb|EEW42333.1| integral transmembrane protein [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 540

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/528 (11%), Positives = 153/528 (28%), Gaps = 39/528 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  ++  +G +      L    ++++P+  P               + +   
Sbjct: 7   RRPRFAMVIALLLTFVGAVS-----LKLIPVEQYPAITPPV-------------VNVSAS 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   + +  +  L + L           +       +++++FA     +  A  V 
Sbjct: 49  WPGASASDVAEAIAAPLETQLNGVDHMLYMESTSSDEGTYRLSITFAAGTDADLAAIDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    ++L  + ++N +         ++             +  S     Q  + +  
Sbjct: 109 NRVAQALAQLPAEVQQNGVQVRKRASNLLMGVSLYSPLGTLSPLFVSNYASTQVREALAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +     P R+  L  TT  ++      N        G   + + 
Sbjct: 169 LPGVGEVQMFGARDYSMRIWLRPDRMNALNITTDDVAQALREQNVQGAAGQVGTPPVFNG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     +              +       I       +         I      
Sbjct: 229 QQQTLTINGLGRL-------------NEAASFGEIIIRRGAQGQLVRLADVATIELGARS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G  L                +              L           V+        
Sbjct: 276 YSSGAQLNGKASAYLGIYPTPTANALQVASAVRAELNRLHTCFPADLTWEVKFDTTRFVA 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      + A+    V++V+ + +   +  L+   +I +++I T A+L LLG +    S
Sbjct: 336 ATIKEIGVSLALTLLAVVVVVSLFLQSWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  I+L + + VD  I+V E +  +  +      +      +    +  + +  L   V 
Sbjct: 396 LFAIILALTMVVDDAIVVVENVETKMAEGLDRLQATAQALRQIAGPVIATTLVLLAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           +       G   R FA+T+  ++ +S   A+++  A+   ++R +  +
Sbjct: 456 VALLPGIVGELYRQFAVTLSTAVALSSLVALTLTPALCALLLRPRPAR 503



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T     L G   N  ++ A++  +   V+D +VV + +    
Sbjct: 362 SWRATLIVVLAIPVSLIGTFAVLYLLGYSANTLSLFAIILALTMVVDDAIVVVENV---E 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
                 +       +++ +  G  + T++      +P+A+     G +   FA+ ++  +
Sbjct: 419 TKMAEGLDRLQATAQALRQIAGPVIATTLVLLAVFVPVALLPGIVGELYRQFAVTLSTAV 478

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNARI 833
            +++  ++ +   +  L +    A+ A +
Sbjct: 479 ALSSLVALTLTPALCALLLRPRPARPAAV 507


>gi|271499884|ref|YP_003332909.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Dickeya
           dadantii Ech586]
 gi|270343439|gb|ACZ76204.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Dickeya
           dadantii Ech586]
          Length = 1044

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/578 (11%), Positives = 157/578 (27%), Gaps = 43/578 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I  +G L       PQ  + R+PS  P               + +   
Sbjct: 7   QRPVFAWVIALFIVLLGTLAI-----PQLPIARYPSVAPPT-------------ISITAS 48

Query: 62  EDDFVNGFLQMYSDELRSF----LKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                   L      L       +K       S+      +I ++F      E     V 
Sbjct: 49  YPGATPKTLNDAVVGLLERELSGVKNLLYFESSVDTAGLAQINVTFKPGTDPELAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ +  +L    ++N +   +     +++     D      +E    + R  ++++  
Sbjct: 109 NRLKSIEPRLPQTVRQNGMQVESADSGFLLMVSLTSDNGRYDEVELGDYLARHIVEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP++L     T   +S      N        G       
Sbjct: 169 IDGVGRIQLFGA-EQAMRIWVDPNKLLSYGLTMNDLSTAITQQNMQIAPGRLGDAPTLPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++                 +    +        R        +      
Sbjct: 228 QQVTIPLTVQGQL-------------ETPEQFAAIVLRAREDGSRVVLADVARVELGAQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       + A        +   T        A L+          +         
Sbjct: 275 YGFSVRENGKDASAAAVQLAPGANAVRTANAIAQRMAELKISMPAGMDYSLPFNTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++   G ++ + +
Sbjct: 335 LSIEQVLRTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALLGTFTVMLAAGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +     ++  S   +           I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMAQERLSPKAATTRAMKEITGAIIAITLVLSAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--KKMKSIDINPLSR 530
            + F  G      R F ++M +SIL S F A+++  A+   ++        +        
Sbjct: 455 PMAFASGSVGVIYRQFTLSMAVSILFSAFLALTLTPALCATLLTPVADDHHTKRGFFGGF 514

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                          R        +  + ++       
Sbjct: 515 NRRFEQLTHHYATGTRALLRRCGSMLLLFAVLTGSLAW 552



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 84/242 (34%), Gaps = 16/242 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L+ V       Q    S +    + +          ++V     +     ++   +
Sbjct: 258 SRVVLADVARVELGAQSYGFSVRENGKDASAAAVQLAPGANAVRTANAIAQRMAELKISM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I + +  +I + + + + +++     R+    A+ A   L+
Sbjct: 318 PAGMDYSLPFNTAPFVKLSIEQVLRTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALL 377

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              T  L      G   N+  +  ++  IG  V+D +VV + +     +    +S +   
Sbjct: 378 GTFTVMLAA----GFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAQERLSPKAAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAA 817
            +++ E  G  +  ++    +V     +    +      F + MA  I+ +A  ++ +  
Sbjct: 432 TRAMKEITGAIIAITL-VLSAVFIPMAFASGSVGVIYRQFTLSMAVSILFSAFLALTLTP 490

Query: 818 PI 819
            +
Sbjct: 491 AL 492



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 125/410 (30%), Gaps = 17/410 (4%)

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
             +  SI G          +  +    ++  + +  +   +      +A STI +     L
Sbjct: 603  ESNMSILGFGFSGSGP--NAAMAFTTLKGWSERGDTTTRAEIALAQQAMSTIREGTSMIL 660

Query: 472  IATVV--LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
            +   +  L    G  +R    T      +    A  +  A    I+      S+      
Sbjct: 661  MPPAIDELGTSSGFTLRLQDRTGRGYQALKAAEAQLLTLAAHSQIVTSVYPDSLPPGSAV 720

Query: 530  RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            +  +         +        +S       +      G    +  +      +  +  +
Sbjct: 721  QLKIDRQKAEALGVSFSTISDTLSAAIGSLYVNDFPNAGRMQQVIIQADAPARMQLDDVL 780

Query: 590  -----DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 + S    +L+ +     S       +   V      G +         + +    
Sbjct: 781  KLYVRNSSGGMVSLKEVVTPVWSDTPLQLTRYQGVLAARLSGMAATGVSSGAAMAEMERL 840

Query: 645  IVPLSTIQNTEIVGPKISR-ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
               L      E  G  +   + + +  + +++S + + + +   ++ W   +  +  + L
Sbjct: 841  AAQLPPGFTIEWTGQSLQERQSVAQAPMLLLLSMVVVFLVLAALYESWSIPVSVMLVVPL 900

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    L G+  ++     ++T+IG S  + +++ +  R   +L        D   
Sbjct: 901  GLLGAVLAVVLRGMPNDVFFKVGLITVIGLSAKNAILIVEFAR---QLREQGYELVDAAV 957

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAA 809
             +    L   + TS+A  + V+P+ V  G       +    +  G++ A 
Sbjct: 958  TAARLRLRPILMTSLAFVLGVVPLMVASGASAETQHAIGTGVFGGMISAT 1007


>gi|304389427|ref|ZP_07371390.1| protein-export membrane protein SecF [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327237|gb|EFL94472.1| protein-export membrane protein SecF [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 371

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 133/312 (42%), Gaps = 14/312 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL- 584
                  L     +   ++ R   + +  +    S+  +   GLN  I+F GG +  V  
Sbjct: 4   YAQWGNALYSGKKSYGIIKNRRIPLTVGAILMAISVIGIAIFGLNPSIEFTGGAEFVVTN 63

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +        + +++  + + +     G     V+   QP D   + +        +  
Sbjct: 64  TVKNPPQQPAYNAVKAAGLNEQTKVAQMGTNGLRVQTSQQPNDVELKIQQELAKAYHV-- 121

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
                   +   +GP     + ++ +VG+++    + + +   F+ W  +  A+  L+ D
Sbjct: 122 ---DIKKVSKTSIGPSWGASVSKQALVGLLVFMGMIAVLLMAYFRTWTMSFSALFALLHD 178

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLI 761
              TLG FA   IE     +  +LT++GYS+ D VVV+D++R+N +     +   + +L 
Sbjct: 179 FLITLGVFAYTHIEITPATIIGLLTILGYSLYDTVVVFDKIRENTRDMFNQSRSKYNELA 238

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           + SIN+T+ RS+ TS+   + V  +        G S +   ++P+  G++V   SSIFIA
Sbjct: 239 NLSINQTMVRSINTSITGILPVSAILFLGAALLGTSTLLDISMPLFIGMIVGTFSSIFIA 298

Query: 817 APILLFIYDWRA 828
            P+L  I     
Sbjct: 299 TPMLTLIRGRSQ 310


>gi|114332125|ref|YP_748347.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Nitrosomonas eutropha C91]
 gi|114309139|gb|ABI60382.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Nitrosomonas eutropha C91]
          Length = 1064

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 83/680 (12%), Positives = 177/680 (26%), Gaps = 37/680 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +GL+      L    + +FP   P   + +  D  G          
Sbjct: 9   RPIFASVLSIIIVIVGLVS-----LRDLPIAQFPEITPP-VVQIDADYPG--------AS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +     +        +        + L+F      +    +     + 
Sbjct: 55  ADVVAEAVARPIEVQLPGIDNLLYYESTSTNDGHMTMRLTFEIGTDVDIAQVQTQNRQKL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  +         +++   +        I  S   + + +D I       
Sbjct: 115 AEPQLPDEVIRQGITVKKTSPDLLLVVALSSTDPAHDTIFLSNYALLRVLDNIKRLPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP R+ QL  T + +       N        G   + +      
Sbjct: 175 DASIFGGQNYSMRLILDPIRMAQLNFTPSDIVAAVREQNRDFPAGRIGREPVINETELTI 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +S             +  +    I                 +           
Sbjct: 235 PVMTKGRMS-------------EVKEFEDMIIRAYPDGSMVRLKDVAQVELGAQSYDLQA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +       +   T +        L     P     V          S   
Sbjct: 282 RQNGRPNTFLLTYLSPGANALETAQRIRNEMDRLAKDFPPGASYDVPYDTTTFIEVSIYE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV++V+F+ +   +  L+   +  +++I T   +  LG ++   ++ G+V
Sbjct: 342 VVKTLAEALLLVVLVVFIFLQSWRATLIPAIAAPISLIGTFIGMEALGFSVNTLTLFGMV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E +        +   +          A   I     +  +    L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHITNGLTPKNAAIKAMQELFGALIAIVLVLASVFLPVAFLG 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFF 532
              G   + FAIT+ LS++IS F A+++  A+   +         +  K  +        
Sbjct: 462 GITGELYKQFAITIALSVMISGFVALTLSPALCALVLKPGHDSPNRFWKIFNRTFDWAQT 521

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      ++        I             G     + +G     V       +S
Sbjct: 522 RYVSMAGTIIKKSVLSIFVFLIAIFFAVSLFKTVPGGFLPEEDQGYFITIVQLPDGASIS 581

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             +  LE ++   +S                          +   +    T       +Q
Sbjct: 582 RTKKVLEKIENYFLSNPAVHSTDAMAGMNFVFSSRGPNHATMFVPLHHWDTRKNSDEQVQ 641

Query: 653 NTEIVGPKISRELIRKGIVG 672
           +          ++    ++ 
Sbjct: 642 SLIANAFGEFAKIPEALVLA 661



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 79/253 (31%), Gaps = 10/253 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +  + L  + +   +     ++  N       L           A   + E+  + + 
Sbjct: 792  TTSTMIPLDSIVTAEFNSGPDPVTHFNGFNSALVLGSAAPGYSSGQALDALQEVANEVLV 851

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                            K +       I  +  + + + + +   ++ W      I  +  
Sbjct: 852  PKGYTIDWSGITYQEKKAASGQK---IWILSFALLMVFLVLAALYESWSIPFAVILAVPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L      G+  ++     ++TLIG S  + +++ +       LY    S  +   
Sbjct: 909  GILGALLAIWTRGLTDDIYFQVGLITLIGLSAKNAILIVEFAND---LYANGASLTEAAL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++        + TSMA  + V P+ +    G +   +    +  G++ A   +IF     
Sbjct: 966  EAARVRFRPIIMTSMAFIMGVSPLVISSGAGAASRIAIGTTVLGGMLAATFLAIFFVPLF 1025

Query: 820  LLFIYDWRAKNAR 832
             + I     +  R
Sbjct: 1026 FVLIGKITHRTRR 1038


>gi|291558125|emb|CBL35242.1| protein-export membrane protein SecF [Eubacterium siraeum V10Sc8a]
          Length = 337

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/302 (26%), Positives = 140/302 (46%), Gaps = 11/302 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+  R     I I+ ++ ++      G+   I+FKGG  L       +D + V+  +E
Sbjct: 7   FDFIGYRKILFLIPIVIAVITVIFNCIFGIEMAIEFKGGTMLTYSYTGEIDTNAVKKTVE 66

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE---IVPLSTIQNTEI 656
               G ++        + L  ++     S   T   +       +        T+ N++ 
Sbjct: 67  GENYGAVTVTTGSSMNSSLEVVEISFSSSEGLTADKQTALSDKLQQTFKDNSLTLVNSQD 126

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFFA 712
           V P    E   K +V V+ S + ++IYI  RFK        + A+  L+ D       F 
Sbjct: 127 VNPTSGTEFFLKCLVAVLFSFVLLVIYIAFRFKKIGGLSAGVFALVALVHDCFMVYAVFV 186

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                 +   +A VLT++G S+N+ +VVYDR+R+N  LY  S+S ++L++ SI +++ RS
Sbjct: 187 FCRFPIDANFMAVVLTVLGNSINNTIVVYDRIRENRNLYGNSLSLKELVNMSITQSITRS 246

Query: 773 VYTSMAAFISVLPM----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           V T++    +VL +    A+ G + I +FAIPM  G++    SS+ I+ P+ +   +   
Sbjct: 247 VNTTVTTAFAVLAICVVCAICGVTSIMTFAIPMMAGLICGTYSSLCISGPLWVLWQEKHG 306

Query: 829 KN 830
           KN
Sbjct: 307 KN 308


>gi|300779141|ref|ZP_07088999.1| HAE1 efflux family protein [Chryseobacterium gleum ATCC 35910]
 gi|300504651|gb|EFK35791.1| HAE1 efflux family protein [Chryseobacterium gleum ATCC 35910]
          Length = 1040

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 82/680 (12%), Positives = 189/680 (27%), Gaps = 41/680 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +   +G++  L     +  + +FP  +P               + +   
Sbjct: 7   RRKVLSLVISILFVLLGIMALL-----KMPITQFPDIVPP-------------SVTVTAK 48

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                           L   +    G+   S     +    I + F      +  A  V 
Sbjct: 49  YTGANAEVSANAVALPLERAINGVPGMTYMSTVTSNDGLTLIQVFFEVGTDPDVAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  +  +L  +  +  + T  E    ++                        + ++  
Sbjct: 109 NRVTTILDELPEEVIRAGVTTEKEVNSMLMYLNITSTDPSQDEQFIYNFTDINVLQELKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +     +    +    DP ++     +  ++       N S      G    + S
Sbjct: 169 IDGVGRAEIMGQKEYSMRVWLDPQKMAAYNISADEVITSLQKQNISAAPGKVGETSGKTS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY+++                F        V I  D  G     +         +  
Sbjct: 229 SQLQYVIK------------YKGKFFEPKQYEEVPIRSDVDGTILKLKDIAKVEFGAMNY 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
            +  +    P  +  +       +          +  +      P     +         
Sbjct: 277 GMVSKTDGRPSASIMMKQRPGSNASEVIESVKAKMEELKVTSFPPGMEYNMAYDVSRFLD 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S S    T      LV IV+F+ +   +  L+   ++ + ++ T A + +L  ++ L +
Sbjct: 337 ASISAVLTTLIEAFILVGIVVFIFLQDWRSTLIPVLAVPVALVGTFAFMDMLDFSVNLLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIA 473
           +  +VL IG+ VD+ I+V E +  +  +  +   +        + A   I        I 
Sbjct: 397 LFALVLAIGIVVDNAIVVVEAVHVKMEEGMNALDATISATKEIAGAVVAITIVMSAVFIP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSR 530
              L    G   R F++T+ +SI+IS   A+++  A+   I     + K K+I       
Sbjct: 457 VAFLDGPVGVFYRQFSLTLAISIVISGVNALTLTPALCAIILKPHDHHKKKTIIDRAFQS 516

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
           F    + +   ++         + +        +    +       G I +       V 
Sbjct: 517 FNTGFERLTNGYVGILSKFATRTTVTFGLLFLFIGLTFVTSKFLPTGFIPMEDQGMVYVS 576

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++  +          +       +K   V            T +           +    
Sbjct: 577 VTTPQGATVERTEKVLDEVTVIAKKIKGVENVTTLAGYSIVTEIAGSSYGMAMINLKDWK 636

Query: 651 IQNTEIVGPKISRELIRKGI 670
            +N  +           KGI
Sbjct: 637 ERNISVNDLISELSDKTKGI 656



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 91/255 (35%), Gaps = 11/255 (4%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            + K   ++ + ++    +  ++   +              +      +  +       +
Sbjct: 242 FEPKQYEEVPIRSDVDGTILKLKDIAKVEFGAMNYGMVSKTDGRPSASIMMKQRPGSNAS 301

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII----SAIAMLIYIWIRF 688
            V+E VK K+ E+   S     E          +   I  V+     + I + I ++I  
Sbjct: 302 EVIESVKAKMEELKVTSFPPGMEYNMAYDVSRFLDASISAVLTTLIEAFILVGIVVFIFL 361

Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L  +  + + +  T  F  +     NL  + A++  IG  V++ +VV + +   
Sbjct: 362 QDWRSTLIPVLAVPVALVGTFAFMDMLDFSVNLLTLFALVLAIGIVVDNAIVVVEAVH-- 419

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  ++  D    +  E  G  V  ++      +P+A   G V      F++ +A  
Sbjct: 420 -VKMEEGMNALDATISATKEIAGAVVAITIVMSAVFIPVAFLDGPVGVFYRQFSLTLAIS 478

Query: 805 IVVAASSSIFIAAPI 819
           IV++  +++ +   +
Sbjct: 479 IVISGVNALTLTPAL 493



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 58/164 (35%), Gaps = 9/164 (5%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I +   + +Y+ +      +   +  + +L   I  +       G++ N+ A  A++ L+
Sbjct: 874  IFAICLLFVYLLLAAQYESFLLPMPVLLSLPTGIFGSYIALVAAGLDNNIYAQVALVMLV 933

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-W 789
            G    + +++ +     +              +   + L   + TS A    ++P+ +  
Sbjct: 934  GLLAKNAILIVEFA---VARNKQGFDIIPAAIEGARQRLRPILMTSFAFVAGLIPLCIAS 990

Query: 790  GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G   I   S     A G+++     + +   + +F      K  
Sbjct: 991  GAGAIGNRSIGTAAAGGMLIGTIFGLVVIPGLYIFFAKLENKKN 1034


>gi|295691162|ref|YP_003594855.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Caulobacter segnis ATCC 21756]
 gi|295433065|gb|ADG12237.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Caulobacter segnis ATCC 21756]
          Length = 1058

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/549 (12%), Positives = 149/549 (27%), Gaps = 32/549 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      LPQ  +  +P  +P   +                  
Sbjct: 10  RPRFAAVLSIIIFIAGLVS-----LPQLPISEYPEVVPPTVV---------VRAAYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++               + T++FA     +    +V   +  
Sbjct: 56  PSVIGQTVAAPLEQAINGVEGMIYQSSQSAADGAMVLTVTFALGTDLDKAQVQVQNRVAQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  + ++  + T        ++            +  S        D++   +   
Sbjct: 116 ALPKLPQEVQRIGVTTDKASPDLTLVVHMISPNNRYDMLYLSNYAQLNVRDRLKRIDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG-NQ 240
                      +    DP +L  L  T   +       N        G      S    Q
Sbjct: 176 DVQTFGAGAYSMRVWLDPEKLAALSMTAGDVVRALREQNVQVAAGQLGAPPNAGSGADFQ 235

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     ++                +    I       +         +          
Sbjct: 236 LSINAPGRLTDEE-------------QFRNVIIRSGEDGQITRLGDVARVELGANNYALR 282

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L            +   +              L+          +          S  
Sbjct: 283 SLLDNKSAVAMPIFQRPGSNALQMAAEVKKTMKELKKEFPEGVDYEIIYDTTAFVQESID 342

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+IV+ + +   +  ++   ++ +++I T A++ +LG  L   ++ G+
Sbjct: 343 SVVHTLIEAIILVVIVVVIFLQGWRASVIPLIAVPVSLIGTFAVMLMLGFGLNALTLFGL 402

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +            +           I  + +      +   F 
Sbjct: 403 VLAIGIVVDDAIVVVENVERNITNGLEPAAATRKAMGEVTGPIISTALVLCAVFIPTAFI 462

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R FA+T+ +S +IS   ++++  A+   +++           L    L    
Sbjct: 463 SGLSGQFYRQFALTIAISTVISAINSLTLSPALAAVLLKSHDAPKDRFQKLIDRALGWLF 522

Query: 538 IAIQFMRAR 546
                  AR
Sbjct: 523 NPFNRFFAR 531



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 70/243 (28%), Gaps = 16/243 (6%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +       D            +         +    + LE + KK               
Sbjct: 814  SFHETTGPDRESHYNGMLTAEINGGPAPGYSTGQAQKALEDLAKKELPNGMGYEWTELTY 873

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                     I    +  +   +A L+ +     W   L  I  + + +   L    +   
Sbjct: 874  QQILAGNTAI---FIFPLCVLLAFLVLVAQYESWSLPLVVILIVPMTLLSALAGVWISKG 930

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + N+     ++ L+G +  + +++ +  ++         S    + ++    L   + TS
Sbjct: 931  DNNIFTQIGLIVLVGLACKNAILIVEFAKE---REEHGDSPLQAVLEACRLRLRPILMTS 987

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS-SSIF--IAAPILLFIYDWRAKN 830
            +A  + V P+ V    G  +       M   +       ++F  I  PI  ++       
Sbjct: 988  IAFIMGVYPLVVSHGAGAEMRR----AMGVAVFSGMLGVTVFGLILTPIFYYVIRRFTAR 1043

Query: 831  ARI 833
              +
Sbjct: 1044 KAV 1046



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 9/148 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     + G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 366 WRASVIPLIAVPVSLIGTFAVMLMLGFGLNALTLFGLVLAIGIVVDDAIVVVENVERNI- 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
             T  +       K++ E  G  + T++      +P A      G     FA+ +A   V
Sbjct: 425 --TNGLEPAAATRKAMGEVTGPIISTALVLCAVFIPTAFISGLSGQFYRQFALTIAISTV 482

Query: 807 VAASSSIFIAAPIL--LFIYDWRAKNAR 832
           ++A +S+   +P L  + +    A   R
Sbjct: 483 ISAINSL-TLSPALAAVLLKSHDAPKDR 509


>gi|300772129|ref|ZP_07081999.1| AcrB/AcrD/AcrF family protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760432|gb|EFK57258.1| AcrB/AcrD/AcrF family protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 1032

 Score =  178 bits (451), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 78/570 (13%), Positives = 178/570 (31%), Gaps = 39/570 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +      +   +I  +G++        Q  +  FP   P               +V    
Sbjct: 9   KKPVLAGVFSLLIVILGVV-----GWKQLGIREFPLTEPPV-----------ISVVTFYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    +E  +            R+  + I++ F      E+  + V   +
Sbjct: 53  GASPDVIASKITRPMEESIAEANGIRTISSESREQVSVISIEFNREMDIEDALNDVRDKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +L  D    ++   +  +  +   +   D       E S        D++     
Sbjct: 113 SKARKQLPADVDPPIVQKASSPDNLVAFLEVESD--TKDIKEVSHIASTVIKDRVQSIPG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP +L     T   +    +  N               S   
Sbjct: 171 INNVAIVGEHKYAMRLRFDPIKLAAYKLTPEDIRQALLRENIDVPSGRVEGNNSELSIRT 230

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  + +               +T   V+ +                 I +   +   
Sbjct: 231 LGRLTTEND--------FAEMIVKQTENAVIRLKDVGSAELGEMNERTAIINETGNLNR- 281

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                  V        +   +    ++        LR         IV      +   S 
Sbjct: 282 -------VGIGVAIQIQRGANAIQVVDEFYKRLEQLRKDIPSEYRLIVGFDFTQSVRESI 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              + T  I  GLV+I++F+ +   +  ++   +I ++++    ++ + G ++ + ++ G
Sbjct: 335 KEVEETLFIAFGLVVIIIFLFLRDWRSTIIPVIAIPVSILSAFFIMYVSGFSINVLTLLG 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IGL VD  I+V E I ++  +      +   G    Y  +  + IT     + + F
Sbjct: 395 LVLAIGLVVDDAIVVLENIYKKIEEGMPPIQAAFKGSKEIYFAVISTTITLAAVFLPIVF 454

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            GG +    + FAI +  S+L+S F A+++   +  + ++ K+           FF+  +
Sbjct: 455 MGGISGQLFKEFAIVVSGSVLVSAFVALTLTPMLSAYFLKKKEGPGWFYRVTEPFFVRMN 514

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFT 566
                 ++A      ++ +F I +  L++ 
Sbjct: 515 NGYAHLLKAFMRARWLAWIFLIVTTGLIYF 544



 Score = 89.8 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 86/241 (35%), Gaps = 12/241 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L  +                 + +  Q        +V++   K++ ++      +   
Sbjct: 261 AELGEMNERTAIINETGNLNRVGIGVAIQIQRGANAIQVVDEFYKRLEQLRKDIPSEYRL 320

Query: 656 IVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           IVG   ++ +          + +    + ++I++++R  W   +  +  + + I      
Sbjct: 321 IVGFDFTQSVRESIKEVEETLFIAFGLVVIIIFLFLR-DWRSTIIPVIAIPVSILSAFFI 379

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G   N+  +  ++  IG  V+D +VV + +    K     +       K   E   
Sbjct: 380 MYVSGFSINVLTLLGLVLAIGLVVDDAIVVLENI---YKKIEEGMPPIQAAFKGSKEIYF 436

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + T++      LP+   G   G +   FAI ++  ++V+A  ++ +   +  +    +
Sbjct: 437 AVISTTITLAAVFLPIVFMGGISGQLFKEFAIVVSGSVLVSAFVALTLTPMLSAYFLKKK 496

Query: 828 A 828
            
Sbjct: 497 E 497



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 133/385 (34%), Gaps = 24/385 (6%)

Query: 464  FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            + +        ++  +        +   M +  ++      ++  A+  F+   ++ K +
Sbjct: 639  YGAASANFRGFLLFPYLPPTIGSRYGGGMPVQFVLQAQDLDTLTAALPKFLNAVRQSKKL 698

Query: 524  DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC-------LLFTHGLNYGIDFK 576
             +   +   +    I I   R +   +G+SI     ++          +    +   +  
Sbjct: 699  -MFADADLKINKPEIKINIDRQKAALMGVSIEEVARTLQLSLSGLRYAYFLRNDRQYEVI 757

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G ++  +  N   DL+ +     + Q+  ++      E      +      + A      
Sbjct: 758  GQMKRELR-NDITDLNSIYVRSNNGQLIPLNNLITTEEAVSPAAIYRYDQFTSATVSAAP 816

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELI--------RKGIVGVIISAIAMLIYIWI-- 686
                 + E +       TE++G      L          +G +   +    ++IY+ +  
Sbjct: 817  APGVSLAEGIQEIERIKTEVLGDNFKTSLAGQSRDYRESQGNIAFTLILALVIIYMILAA 876

Query: 687  -RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                    L  + T+ + +T  +     FG   N+ +   ++TL+G    + +++ +   
Sbjct: 877  QFESLRDPLTIMLTVPMAVTGAILSLHWFGQSLNVFSQIGIITLVGLITKNGILIVEFAN 936

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
                L  T +S  +   ++  +     + TS+A     LP+A    +   S  I +A G+
Sbjct: 937  ---HLKDTGLSKFEAAIQAAEQRFRPILMTSLAMIFGALPIA-LTANSRQSLGIVIAGGL 992

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            V +   ++FI   +  ++   + + 
Sbjct: 993  VFSGILTLFIIPAVYSYLSSSKRRK 1017


>gi|254523806|ref|ZP_05135861.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14]
 gi|219721397|gb|EED39922.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14]
          Length = 1057

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/626 (10%), Positives = 160/626 (25%), Gaps = 48/626 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +     
Sbjct: 9   PVFAWVVAILISLSGVIAIL-----NLGVESYPNIAPP-------------QVTVSATYP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    + +ITL+F      +    +V   
Sbjct: 51  GASADTTEKSVTQVIEQQLTGIDHLLYFSSSSSSNGRAQITLTFETGTDPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        +++     D    +    +  +  + +DQ+    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVVALQSDTPTINRDALNDIVGSRVLDQVSRIP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +++    + +++       N        G     +   
Sbjct: 171 GVGSTQQFGS-EYAMNIWLNPEKMQGYGLSASQVLAAVRAQNVQFAAGALGSDPSPEGQH 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I        R        +        
Sbjct: 230 FTATVSAEGRFS-------------SPQEFENIILRANADGSRVLLKDIARVAFGANNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E        L+              +      S
Sbjct: 277 FDTQYNGKPTGAFAIQLLPGANALNVAEAVRGKMDELQPSFPSGVTWFSPYDSTTFVKIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  L+    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IQEVVKTLFEAVLLVFLVMLIFLQNFRATLIPTLVIPVALLGTFLGMWMIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IG+ VD  I+V E +      +  +   +     ++    +    +      +  
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEGLAPKPATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
              G   G   + FA+T+ +S+  S F A+    A+                 ++ +   
Sbjct: 457 ALQGGAAGEIYKQFALTIAISMAFSAFLALGFTPALCATFLKPTHNDNPNIIYRTFNKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     I      A  W +   +L ++C        G     + +G     V    
Sbjct: 517 DKISHTYVGHITSAVRHAPRWMILFVVLTALCGFLFTRMPGSFLPEEDQGYALAIVQLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDG 613
                        ++        ++G
Sbjct: 577 GSTKGQTNEVFAQMRGILEKQDGYEG 602



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 78/237 (32%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  +              Q                 +++     +     ++    
Sbjct: 258 SRVLLKDIARVAFGANNYGFDTQYNGKPTGAFAIQLLPGANALNVAEAVRGKMDELQPSF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      +        +  I++ +  +  + + + + + I  + +   L     + + + 
Sbjct: 318 PSGVTWFSPYDSTTFVKISIQEVVKTLFEAVLLVFLVMLIFLQNFRATLIPTLVIPVALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     + G   N   + A++  IG  V+D +VV + +     +    ++ +    K++
Sbjct: 378 GTFLGMWMIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERIMSEEGLAPKPATQKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++      +P A+ G   G +   FA+ +A  +  +A  ++     +
Sbjct: 436 TQITGAVVAITVVLAAVFIPSALQGGAAGEIYKQFALTIAISMAFSAFLALGFTPAL 492



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 48/122 (39%), Gaps = 6/122 (4%)

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             LG   L G+  +L     ++T+IG +  + +++ +   +         + RD   ++  
Sbjct: 911  ALGLSMLRGLPNDLFFKIGLITVIGLAAKNAILIVEFAVEQRAA---GKNLRDATIEAAR 967

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + TS A  + V+PMA+    G +   +    +  G++ A    + +     + +
Sbjct: 968  LRFRPILMTSFAFIMGVIPMAISTGAGANSRHAIGTGVIGGMLFATLLGLLMIPVFFVVV 1027

Query: 824  YD 825
              
Sbjct: 1028 RR 1029


>gi|254374503|ref|ZP_04989984.1| preprotein translocase [Francisella novicida GA99-3548]
 gi|151572222|gb|EDN37876.1| preprotein translocase [Francisella novicida GA99-3548]
          Length = 645

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 280/542 (51%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D    ++  L      + S
Sbjct: 107 YIIAMNMLSNSP--NWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNSLSIILS 164

Query: 80  FLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
             K   I + S  +                  ++++ A+S   + +   ++         
Sbjct: 165 AAKDNSINISSSTKAEEKSTIKAPQNYFENGFVSITLANSVDVDKLKQYLST-------D 217

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 218 FIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAILQVVTVMRNRINALGVAEASVAQAG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G      
Sbjct: 278 DNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNGRGYQSY 337

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 338 YSLKGTAVAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 397

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 398 TTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 457

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ +N+IL 
Sbjct: 458 VPVHIVQEQQIGPSLGKDNIEKGMLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILI 517

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 518 VAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 577

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 578 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKK 637

Query: 521 KS 522
             
Sbjct: 638 LE 639



 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIEKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/121 (13%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  ++  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIVLALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|83945720|ref|ZP_00958065.1| hypothetical protein OA2633_11029 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83850921|gb|EAP88781.1| hypothetical protein OA2633_11029 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 1077

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 149/550 (27%), Gaps = 37/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  IGL        P   L ++P   P               + ++   
Sbjct: 10  RPIFSAVIAVFITLIGLFA-----YPSLPLSQYPEIAPPT-------------IEVQASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  L +  +  L   +   E +   +       Q  +T++F      +     V  
Sbjct: 52  PGATAEDLAEQVAAPLEQEINGVEDMLYMTSSATASGQVALTVTFQPGTDLDTAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    +   +    + +  ++++                       D++   
Sbjct: 112 RVNRAEPRLPEQVRLRGVQVNQQSQGFLLIAALISPDESLDKTFLGNYANTTLRDRLLRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP R      T   +       N    G   G       +
Sbjct: 172 EGISNVQIFGGGNYAMRVWIDPERAAAHDMTAGDVVAALQAQNIQAAGGSLGQPP--FDE 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N    +  + + G  ++           +    I       +         +       
Sbjct: 230 NNPAEFQQAISVQGRLMST---------EEFGNVIVKRGENGQLTHLREVARVELAEEDY 280

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +       A        A         +          
Sbjct: 281 SIKGYFGGDPGVAMAIIQQPGANALDAANAALEALDEASADFPEGMEYFIPYNPTEFVQA 340

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S  + T      LV++V+ + +   +  ++   +I +++I   A+   LG ++   S+
Sbjct: 341 SVSAVQRTLIEAVFLVVLVIVIFLQNWRAAVIPIVAIPVSIIGVFAVQLALGFSINSLSL 400

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL +G+ VD  I+V E +    R+  S   +           +    +  +   V  
Sbjct: 401 FALVLAVGIVVDDAIIVVENVERLMREGMSPRKAAHQSMKEVSGALIAMTLVLVSVFVPT 460

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
                  G   R FA+ +  S +IS+  ++++  A+   I++  K +      L+     
Sbjct: 461 ALVPGIPGIFYRQFAVAVATSAVISLIISLTLSPALSALILKPHKEEDHGPGWLAPLRFA 520

Query: 535 PDCIAIQFMR 544
            +     F  
Sbjct: 521 ANKFNAGFDW 530



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 55/133 (41%), Gaps = 6/133 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  A+  I  + + I          G   N  ++ A++  +G  V+D ++V + +    +
Sbjct: 367 WRAAVIPIVAIPVSIIGVFAVQLALGFSINSLSLFALVLAVGIVVDDAIIVVENV---ER 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           L    +S R    +S+ E  G  +  ++      +P A+  G        FA+ +A   V
Sbjct: 424 LMREGMSPRKAAHQSMKEVSGALIAMTLVLVSVFVPTALVPGIPGIFYRQFAVAVATSAV 483

Query: 807 VAASSSIFIAAPI 819
           ++   S+ ++  +
Sbjct: 484 ISLIISLTLSPAL 496


>gi|307292614|ref|ZP_07572460.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobium chlorophenolicum L-1]
 gi|306880680|gb|EFN11896.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobium chlorophenolicum L-1]
          Length = 1061

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/575 (11%), Positives = 154/575 (26%), Gaps = 34/575 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD-ELRSFLKKEG 85
                + ++P  +P               + +           +       +   +    
Sbjct: 29  FVGLPVSQYPDIVPPT-------------VTVAAQYPGASAETVAQTVAAPIEQEINGVD 75

Query: 86  -IGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
            +   S +   +    IT++F      +     V   +     +L  + ++  +VT    
Sbjct: 76  NMLYQSSQSTGDGKVTITVTFKVGTDLDAAQVLVQNRVAIAVPRLPEEVQRLGVVTRKTT 135

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              +++               S   + Q  D++   +              +    DP R
Sbjct: 136 PDFLMVVNLQSPDGTFDRNYLSNYALTQVRDRLARLDGVGDVQLFGSRDYAMRVWIDPDR 195

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
              L  T  ++       N        G       +  Q  VE +  ++           
Sbjct: 196 AAALNLTAGEIVQALRAQNVQVSAGSIGQPPYEKGEAFQLGVEMQGRLT----------- 244

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
             +  +    +   +   R+        +            L+           +   + 
Sbjct: 245 --EPQQFADIVVRTDTDGRQVRVGDVARVELGAQDYGTNTYLSNKPTVVIATMQRPGSNA 302

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        L           +          S      T      LV++V+ + +
Sbjct: 303 LDAAEKVKAEMEQLSKRFPKGLEYSIIYNPTEFISQSIDAVYQTLFEAVLLVVLVILVFL 362

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  ++   +I +++I T A+L+ LG +L   S+ G+VL IG+ VD  I+V E +   
Sbjct: 363 QNWRAAIIPIIAIPVSLIGTAAILAALGYSLNNLSLFGLVLAIGIVVDDAIVVVENVERN 422

Query: 442 NRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
                +   +          A   I        + T+ +    G   + FA+T+  + +I
Sbjct: 423 IEHGMTPLEAARTSMDEVSAALVAIVLVLCAVFVPTLFITGISGAFYQQFAVTISTATII 482

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           S+  ++++  A    +++ +    +  N      +                   + L   
Sbjct: 483 SLILSLTLSPAAAALLLKPRHGAQLPANAPRWRRIAAQAADRFNRGFDRLSAAYARLTRF 542

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                        G+         V     +    
Sbjct: 543 LVARPKKMLLTYSGLIAATIALFWVTPGGFIPAQD 577


>gi|187919247|ref|YP_001888278.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Burkholderia phytofirmans PsJN]
 gi|187717685|gb|ACD18908.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phytofirmans PsJN]
          Length = 1061

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 67/548 (12%), Positives = 155/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++        +  +  +P  +P + +          H       
Sbjct: 10  RPIFAGVLSVLILLAGIISLF-----KLPISEYPEVVPPSVV---------VHAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAEAVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTNPDLATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGVTTIKSSPTLTMVVHLISPNNRYDMTYLRNYALLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N      + G          Q 
Sbjct: 176 EVQLWGSGDYAMRVWLDPQKVSQRGLTATEVVNAIREQNIQVAAGVIGASPSVPGTQLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      I    +      
Sbjct: 236 SVNARGRLRTE-------------GEFGDIIVKTTPDGGVTYLKDIARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +        L           +          S   
Sbjct: 283 LLDNKPAVALAINQAPGANSLAISDQVRTAMKELAEDMPAGVEYKIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLSARDATYKAMQEVSGPIIAIALTLVAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   ++R    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAMLLRSHGAKEDFLTRVMNRVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 RFNKVFHR 530



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSVLSALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+ +    G  +  +  I + FG+
Sbjct: 960  -LEHDGHTPLSAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 78/201 (38%), Gaps = 9/201 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      ++ + + +   V    + +           ++   +  + +  I +++++   
Sbjct: 306 SDQVRTAMKELAEDMPAGVEYKIVYDPTQFVRSSIEAVVHTLLEAIALVVIVVIVFLQTW 365

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N
Sbjct: 366 RASIIPL---IAVPVSIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           +      +S RD   K++ E  G  +  ++      +P+A      G     FA+ +A  
Sbjct: 423 I---ENGLSARDATYKAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIS 479

Query: 805 IVVAASSSIFIAAPILLFIYD 825
            V++A +S+ ++  +   +  
Sbjct: 480 TVISAFNSLTLSPALSAMLLR 500


>gi|300313244|ref|YP_003777336.1| multidrug efflux system transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076029|gb|ADJ65428.1| multidrug efflux system transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1033

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/517 (12%), Positives = 149/517 (28%), Gaps = 33/517 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++      + Q  + R+PS  P              +       
Sbjct: 8   RPIFAWVVALFIVLFGVIA-----MSQLPIARYPSVAPPTV---------SINATYPGAT 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +N  +    +   S +K       S       +I+++F      E     V   L+ 
Sbjct: 54  PQTMNDGVISLIERELSGVKNLLYFESSADTSGTAQISVTFKPGTDPELAQVDVQNKLKA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L    ++N +   +     +++            +  +  + R  ++++   E   
Sbjct: 114 IEARLPQTVRQNGVTVESAASSFLLMVSLTSVDGRYDEVRLNDYLARNIVEELRRMEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     T   +S      N        G            
Sbjct: 174 RVQLFGA-EQAMRIWLDPFKLNAYGLTVTDISTAISQQNAQIAPGRLGDAPAVRGQQIAM 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +   +    R        +           
Sbjct: 233 PLTVQGQL-------------QSPAQFAAIVLKAKADGSRVLLGDVARVELGAQSYAFAN 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +   T          LR          +          S   
Sbjct: 280 RENGKPAGVAAVQLSPGANAVRTAAAIQARMEELRPSLPQGMAFSLPYNTAPFVKISIQK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ ++      + ++ TLA++ L G ++ + ++ G+V
Sbjct: 340 VVQTLIEAMVLVFLVMYLFLQNVRYTVIPAIVAPIALLGTLAVMQLAGYSVNVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +             +           I    +      + +   
Sbjct: 400 LAIGIIVDDAIVVVENVERIMAHEGLGPREATIKAMGEITGAIIGITLVLTAVFIPMALA 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG      R F++ M +SIL S F A+S+  A+   +
Sbjct: 460 GGSVGVIYRQFSVAMAVSILFSAFLALSLTPALCATL 496



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 91/247 (36%), Gaps = 14/247 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q    + +                 ++V     ++   +++   +
Sbjct: 258 SRVLLGDVARVELGAQSYAFANRENGKPAGVAAVQLSPGANAVRTAAAIQARMEELRPSL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I+K +  +I + + + + +++     R+    A+ A   L 
Sbjct: 318 PQGMAFSLPYNTAPFVKISIQKVVQTLIEAMVLVFLVMYLFLQNVRYTVIPAIVAPIAL- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                TL    L G   N+  +  ++  IG  V+D +VV + +     +    +  R+  
Sbjct: 377 ---LGTLAVMQLAGYSVNVLTMFGMVLAIGIIVDDAIVVVENV--ERIMAHEGLGPREAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            K++ E  G  +  ++      +PMA+ GGSV      F++ MA  I+ +A  ++ +   
Sbjct: 432 IKAMGEITGAIIGITLVLTAVFIPMALAGGSVGVIYRQFSVAMAVSILFSAFLALSLTPA 491

Query: 819 ILLFIYD 825
           +   +  
Sbjct: 492 LCATLLR 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 68/169 (40%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L +   +    L  +  ++     +
Sbjct: 865  QAPMLMALSMLVVFLVLAALYESWSIPLSVMLVVPLGLVGAVAAVILRDMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  R   +L +  +   +   K+    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAR---QLRSEGMGLVEAAIKASVLRLRPILMTSLAFALGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +  G       +    +  G+V A   ++       + +     + AR
Sbjct: 982  MLASGASAETQRAIGTGVFGGMVSATVLAVLFVPVFFVLVLGCAQRLAR 1030


>gi|291532141|emb|CBK97726.1| protein-export membrane protein SecF [Eubacterium siraeum 70/3]
          Length = 337

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 80/302 (26%), Positives = 140/302 (46%), Gaps = 11/302 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+  R     I I+ ++ ++      G+   I+FKGG  L       +D + V+  +E
Sbjct: 7   FDFIGYRKVLFLIPIVIAVITVIFNCIFGIEMAIEFKGGTMLTYSYTGEIDTNAVKKTVE 66

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE---IVPLSTIQNTEI 656
               G ++        + L  ++     S   T   +       +        T+ N++ 
Sbjct: 67  GENYGAVTVTTGSSMNSSLEVIEISFSSSEGLTADKQTALSDKLQQTFKDNSLTLVNSQD 126

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFFA 712
           V P    E   K +V V+ S I ++IYI  RFK        + A+  L+ D       F 
Sbjct: 127 VNPTSGTEFFLKCLVAVLFSFILLVIYIAFRFKKIGGLSAGVFALVALVHDCFMVYAVFV 186

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                 +   +A VLT++G S+N+ +VVYDR+R+N  LY  S+S ++L++ SI +++ RS
Sbjct: 187 FCRFPIDANFMAVVLTVLGNSINNTIVVYDRIRENRNLYGNSLSLKELVNMSITQSITRS 246

Query: 773 VYTSMAAFISVLPM----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           V T++    +VL +    A+ G + I +FAIPM  G++    SS+ I+ P+ +   +   
Sbjct: 247 VNTTVTTAFAVLAICVVCAICGVTSIMTFAIPMMAGLICGTYSSLCISGPLWVLWQEKHG 306

Query: 829 KN 830
           KN
Sbjct: 307 KN 308


>gi|153011372|ref|YP_001372586.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151563260|gb|ABS16757.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 1057

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/567 (12%), Positives = 157/567 (27%), Gaps = 40/567 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  ++   G L  L     +  L  +P   P               + +  + 
Sbjct: 10  RPIFAVVLSVLMLIGGGLTLL-----KLPLSEYPQVTPPT-------------VQVTANY 51

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S +   +    +T++F      +    +V  
Sbjct: 52  PGASPEVITETVAAPLEQVINGVENMLYMSSQAATDGRMTLTVTFQQGTDPDMAQIQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +VT       +++            +  S     Q  DQ+   
Sbjct: 112 RVSRALPRLPQEVQRIGVVTQKTSPDILMVVHLVSPDDRYDPLYLSNFATLQVRDQLARI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 L        +    DP+++     T + +       N        G +    S 
Sbjct: 172 SGVGDVLVWGAGEYSMRVWLDPAKVAARGLTASDVVAAIQEQNAQVAAGSVGQQPDA-SA 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V     +S                +    +       +         I       
Sbjct: 231 ALQVTVNTLGRLSNEE-------------QFGDIVVKTGADGQVTRLRDVSRIELGADGY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L                +              L+ G        +          
Sbjct: 278 ALRSLLDGKPALAMQIVQSPGANALDVASAIRGTMEELQKGFPEGIEYRIAYDPTVFVKA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+ + +   +  ++   ++ ++++ T AL+ + G +L   S+
Sbjct: 338 SLEAVVMTLLEAIVLVVIVVVLFLQTWRASIIPLVAVPISLVGTFALMYMFGFSLNTLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT---ALIAT 474
            G+VL IG+ VD  I+V E +       ++   +           I           I +
Sbjct: 398 FGLVLSIGIVVDDAIVVVENVERHIALGETPKQAARKAMDEVTGPIIAITSVLSAVFIPS 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   R FA+T+ +S ++S   ++++  A+   +++                 +
Sbjct: 458 AFLSGLQGEFYRQFALTIAISTILSAINSLTLSPALAGVLLKPHHGDVKRDLLTRVIDGL 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSI 561
                  F R         +     ++
Sbjct: 518 FGWFFRLFNRFFDSASTAYVWSVRRAL 544



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 72/241 (29%), Gaps = 13/241 (5%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             ++     D            +             T  +E +  +               
Sbjct: 814  TIQHSSGPDRVMHYNSFPSADISGGPAPGYSFGQATAAIERIMTETLPSGMAFEWTELAY 873

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               +     +    + V+++    LI       W   L  +    + +   +    L G 
Sbjct: 874  QEKQAGNTAMYIFPLSVLLAF---LILAAQYNSWSLPLAVLLIAPMALLSAIVGVWLTGG 930

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            + N+      + L+G +  + +++  + R ++N       +   + + ++    L   + 
Sbjct: 931  DNNIFTQIGFVVLVGLAAKNAILIVEFARAKEN-----EGVDPLNAVQEAARLRLRPILM 985

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS+A    V+P+ +    G  +     I +  G++      + +     + +     +  
Sbjct: 986  TSLAFIAGVVPLVIATGAGAEMRHVMGIAVFSGMLGVTLFGLLLTPIFYVVVRKLALRRD 1045

Query: 832  R 832
            +
Sbjct: 1046 K 1046



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPISLVGTFALMYMFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRSV-YTS-M-AAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
                 + +    K+++E  G  +  TS + A FI    ++   G     FA+ +A   +
Sbjct: 421 HIALGETPKQAARKAMDEVTGPIIAITSVLSAVFIPSAFLSGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAGVLLK 499


>gi|153010200|ref|YP_001371414.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151562088|gb|ABS15585.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 1061

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/505 (12%), Positives = 139/505 (27%), Gaps = 31/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +    +  +P  +P   +                  
Sbjct: 10  RPVFAGVLSVLIFVAGLI-----GMTGLPISEYPEVVPPQIV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              ++  +    +E  + ++                +T++FA     +     V   +  
Sbjct: 56  PAVISETVATPLEEQINGVEGMLYMQSQATADGVMTLTVTFALGTDPDQAQQLVQNRISQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T        ++                   +    D+I       
Sbjct: 116 AEPRLPEEVRTLGVTTAKSSPDLTLVVHLISPDGRYDVNYLRNYAVLNVKDRIARIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +   + + ++      N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRVWIDPQKAAERGLSASDIATAIRQQNVQAAAGVIGASPSVSGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 +    A      
Sbjct: 236 SVNAQGRL-------------QSPEEFANIVVKSGSEGEITRLGDVARVEMGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     E      A L+          +          S   
Sbjct: 283 LLDNKSAVGMGVFQAPGSNALEISENVHAAMADLKKTMPEGVDFDIVYDTTAFVKASIES 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ M +   +  ++   ++ ++++ T A++ + G ++   S+ G+V
Sbjct: 343 VIHTLLEAIVLVVIVVIMFLQTWRASIIPLVAVPVSIVGTFAVMYVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEQGLSPVEATYRAMQEVSGPIIAIALVLVAVFVPLAFIT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTA 503
              G   R FA+T+ +S +IS F +
Sbjct: 463 GLTGQFYRQFALTIAISTVISAFNS 487



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLALPLSIIMIVPMGIMAALTGVWLTGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L  +  S      ++    L   + TSMA  + V+P+ +    G  +  +  + +  G+
Sbjct: 960  -LELSGRSVVQAAVEASRLRLRPILMTSMAFIMGVVPLVMSTGAGAEMRSAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +   +  IF+     + I     + 
Sbjct: 1019 IGVTAFGIFMTPVFYVLIRKLSGER 1043



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 76/188 (40%), Gaps = 9/188 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      +  +KK + E V    + +T          +I   +  +++  I +++++   
Sbjct: 306 SENVHAAMADLKKTMPEGVDFDIVYDTTAFVKASIESVIHTLLEAIVLVVIVVIMFLQTW 365

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N
Sbjct: 366 RASIIPL---VAVPVSIVGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           +      +S  +   +++ E  G  +  ++      +P+A      G     FA+ +A  
Sbjct: 423 I---EQGLSPVEATYRAMQEVSGPIIAIALVLVAVFVPLAFITGLTGQFYRQFALTIAIS 479

Query: 805 IVVAASSS 812
            V++A +S
Sbjct: 480 TVISAFNS 487


>gi|91779246|ref|YP_554454.1| RND family hydrophobe/amphiphile efflux pump [Burkholderia
           xenovorans LB400]
 gi|91691906|gb|ABE35104.1| hydrophobe/amphiphile efflux pump, RND family [Burkholderia
           xenovorans LB400]
          Length = 1061

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/548 (12%), Positives = 155/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++        +  +  +P  +P + +          H       
Sbjct: 10  RPIFAGVLSVLILLAGVISLF-----KLPISEYPEVVPPSVV---------VHAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAEAVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTNPDLATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTIKSSPTLTMVVHLISPNNRYDMTYLRNYALLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N      + G          Q 
Sbjct: 176 EVQLWGSGDYAMRVWLDPQKVAQRGLTATEVVNAIREQNIQVAAGVIGASPSVPGTQLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      I    +      
Sbjct: 236 SVNARGRLRTE-------------GEFGDIIVKTAPDGGVTYLRDIARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +        L           +          S   
Sbjct: 283 LLDNKPAVALAINQAPGANSLAISDQVRSAMKELAEDMPAGVEYKIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLSARDATYKAMQEVSGPIIAIALTLVAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   ++R    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAMLLRSHGAKEDFVTRVMNRLLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 RFNKVFHR 530



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSVLSALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+ +    G  +  +  I + FG+
Sbjct: 960  -LEHDGHTPLSAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAIVVVENVERNI- 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGI 805
                +S RD   K++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 424 --ENGLSARDATYKAMQEVSGPII-AIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALSAMLLR 500


>gi|332663872|ref|YP_004446660.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332332686|gb|AEE49787.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 1076

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/546 (12%), Positives = 158/546 (28%), Gaps = 40/546 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +   I  +G+L ++        + +FP   P               + + + 
Sbjct: 7   QRPVLAIAISLAIIFLGILASM-----TMPISQFPQIAPP-------------RVNIFIA 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +Q     L   +        I   +    +  I + F            V 
Sbjct: 49  YPGASADILVQSTLIPLERAINGVQGMQYIISDATSAGEATIQIVFEPDTDPNAAVVNVK 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V + L    ++  ++ T  +   ++          +           + + ++  
Sbjct: 109 TRVDQVMNNLPPLVQREGVIITPIQPSMLMYVNLYSTDKHADEKFLYNYANVKILPELQR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +     P R+R    +T ++       +   +    G    + +
Sbjct: 169 ISGMGRAQILGSRQYAMRIWLKPDRMRAYNVSTEEVMEAVSEQSVIGRPGRIGQSSGKKA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              ++++  K   S             K  +    I                 +      
Sbjct: 229 QSLEFVLTYKGRFS-------------KPEEYEDIIVRANPDGEVLKLHDIAEVELGSEF 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       + +  IE   +    + A   P     +         
Sbjct: 276 FDIYCNKDGYPSASIVLKQNFGSNASKVIEATKVKLKEMEADFPPGMAYEINYDVSKFVG 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F+ +   +  L+   ++ +++I     + L G T+ L +
Sbjct: 336 ASIEKVMHTLIEAFILVALVVFLFLGDWRSTLIPTLAVPVSLIGAFLFMQLFGLTINLIT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD+ I+V E +  +      S F ++          I    +      V
Sbjct: 396 LFALVLAIGIVVDNAIVVVEAVHVKMETKHLSPFKAVKEVLHEISGAIIAITLIMTAVFV 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      R F+ITM  +I++S   A+++   +   I++    K+    P+  F 
Sbjct: 456 PVAFMTGPVGIFYRQFSITMASAIVLSGVVALTLTPILSAMILKNHYGKTRKKTPIDAFL 515

Query: 533 LIPDCI 538
              +  
Sbjct: 516 NWFNRR 521



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/253 (18%), Positives = 102/253 (40%), Gaps = 10/253 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + V AN   ++  +    E     +      + +      +  +       ++V+E 
Sbjct: 247 YEDIIVRANPDGEVLKLHDIAEVELGSEFFDIYCNKDGYPSASIVLKQNFGSNASKVIEA 306

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
            K K+ E+           +   +S+ +   I K +  +I + I + + +++    W   
Sbjct: 307 TKVKLKEMEADFPPGMAYEINYDVSKFVGASIEKVMHTLIEAFILVALVVFLFLGDWRST 366

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + +     F  LFG+  NL  + A++  IG  V++ +VV + +   +K+ T 
Sbjct: 367 LIPTLAVPVSLIGAFLFMQLFGLTINLITLFALVLAIGIVVDNAIVVVEAVH--VKMETK 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +S    + + ++E  G  +  ++      +P+A   G V      F+I MA  IV++  
Sbjct: 425 HLSPFKAVKEVLHEISGAIIAITLIMTAVFVPVAFMTGPVGIFYRQFSITMASAIVLSGV 484

Query: 811 SSIFIAAPILLFI 823
            ++    PIL  +
Sbjct: 485 VAL-TLTPILSAM 496



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 82/250 (32%), Gaps = 12/250 (4%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +  V  S   S  ++    +I+  N     +             A T + E+ K+ + + 
Sbjct: 794  DEMVPYSSFMSLRKTQGPNEITRFNLYTSSSIRGVPAAGFTSGDAITTIQEVAKETLPQ- 852

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
                  +       K   E     +   II  + + + +  +++ +   L  I +L + I
Sbjct: 853  GYDIAWEGLSYDEAKRGNE----ALYIFIIVVVFVYLVLAAQYESFIIPLAVIFSLPVGI 908

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              +     + G+  ++ A   ++ L+G    + V++ +     ++ +   +S  +   + 
Sbjct: 909  FGSFVLLKVMGLSNDIYAQIGIIMLMGLLGKNAVLIVEFA---VQKHLQGLSVLEAAIEG 965

Query: 765  INETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILL 821
                    + TS A    ++P+    G   I   +       G+++     + I   +  
Sbjct: 966  SKARFRPILMTSFAFIAGLIPLVRATGPGAIGNRTIGASALGGMLIGTIFGVIIVPGLYY 1025

Query: 822  FIYDWRAKNA 831
                      
Sbjct: 1026 IFGKMAEGRK 1035


>gi|54298516|ref|YP_124885.1| hypothetical protein lpp2580 [Legionella pneumophila str. Paris]
 gi|53752301|emb|CAH13733.1| hypothetical protein lpp2580 [Legionella pneumophila str. Paris]
          Length = 1050

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/588 (11%), Positives = 150/588 (25%), Gaps = 28/588 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  IG++           + ++P+ +P               + +    
Sbjct: 9   RPVLANVIALFIVFIGIIAIAV-----LPVSQYPAIVPPT-------------IQVTTTY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L       +   +           +        + ++FA           V  
Sbjct: 51  PGADAKTLINTVALPIEQQVNGVEDMLYMQSTSTSGGTYTLIVTFAIGTDLNYAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   ++L    +K  +V   +    +              +           D++   
Sbjct: 111 RVQAAMAQLPESVQKQGVVVQQKSTAILQFITLTSKNNEYDGVFLDSYATINMQDELSRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP ++       + +       N        G        
Sbjct: 171 PGVGNVVVFGSGSYAMRVWLDPKKMLAFSLNPSDVLNAISYQNKEVSAGQLGAPPTVGKQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V    ++S              T       +      +         +       
Sbjct: 231 AYQFTVNVPGQLSDPKEFENIIIKTIDTPPDQNSSASSSA--QVVRIRDVGRVELGSESY 288

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A +     P     +          
Sbjct: 289 NQLANLNGKPTAAIGIFQLPGANALDVAQEVRKAVAKMAKQFPPGLEYSIPFDTTVFVKA 348

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+ + +   +  LV   ++ + +I T   + LLG ++ L ++
Sbjct: 349 SIEEVYKTLFEAGVLVLIVIIVFLQNFRASLVPATTVPVTIIGTFFAMLLLGYSINLLTL 408

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IG+ VD  I++ E + +   K  S   S  +     +  I    +  +   V  
Sbjct: 409 FALVLAIGIVVDDAIVIVEGVTQHIEKGMSPKESAILAMKELFGPIIGITLVLMAVFVPA 468

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G     FA+ +  +  IS   A+++        ++              F  I
Sbjct: 469 GFMPGLTGSMYAQFALVIAATAFISAINAMTLKPTQCALWLKAPDTSKPKNIFFQAFDRI 528

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            + I   +++     V  S    +  I L+            G I + 
Sbjct: 529 YNPIESAYVKFIDRLVHRSGKVCLIGIILVACAIYGLTRIPTGFIPME 576



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 70/177 (39%), Gaps = 9/177 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + +  + K+    +  S   +T +       E+ +      ++  I +++++    
Sbjct: 317 QEVRKAVAKMAKQFPPGLEYSIPFDTTVFVKASIEEVYKTLFEAGVLVLIVIIVFLQ--- 373

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L   TT+ + I  T     L G   NL  + A++  IG  V+D +V+ + +    
Sbjct: 374 NFRASLVPATTVPVTIIGTFFAMLLLGYSINLLTLFALVLAIGIVVDDAIVIVEGV---T 430

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +     +S ++    ++ E  G  +  ++      +P        GS+   FA+ +A
Sbjct: 431 QHIEKGMSPKESAILAMKELFGPIIGITLVLMAVFVPAGFMPGLTGSMYAQFALVIA 487



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I +   +L+Y+ +      W      I ++ L +  T+      G++ N+     +L LI
Sbjct: 886  IFALSLVLVYLILSGQYENWLIPSAIILSVPLTLVGTVLALGSLGMDNNMYTQIGLLLLI 945

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
              +  + +++ +  R+  +++    S  +             + TS A  + V+P+    
Sbjct: 946  ALATKNAILIVEVAREQREIHNK--SVLEAAVIGAKTRFRPILMTSFAFIMGVMPLVFAT 1003

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G +   S  I ++ G++ +   ++       + +  W+ K  
Sbjct: 1004 GAGANSRRSIGIAVSSGMLASTCLAVVFVPVFYVLLQTWQDKRK 1047


>gi|308049840|ref|YP_003913406.1| protein-export membrane protein SecD [Ferrimonas balearica DSM
           9799]
 gi|307632030|gb|ADN76332.1| protein-export membrane protein SecD [Ferrimonas balearica DSM
           9799]
          Length = 597

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 154/512 (30%), Positives = 265/512 (51%), Gaps = 38/512 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           S     PS +       +SLGLDLRGG   +L+VD    +N   Q     LRS ++    
Sbjct: 108 SQQPAAPSWLLNMGFGPMSLGLDLRGGVQFLLDVDMAPVMNAQQQAVMQSLRSTVRGVR- 166

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  Q  + +T S      ++ + + V     G                     +++ 
Sbjct: 167 ---AQAQHDHSVTTSALTDAQRQQVIEVVKKDYPGWQW------------RNHVDGLALS 211

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +     +Q+    + Q+++I+R RI+++GI+E+ +QR G++RI I+LPG QDP   ++++
Sbjct: 212 MKPEEQEQLTRLTVIQNLQILRSRIEELGITEAVVQRQGTNRIRIELPGVQDPVAAKKVI 271

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           G T  ++F++V       G     + L  + G    V+    ++G H+  A A    +  
Sbjct: 272 GATTSLAFYEVNQ-----GEPVQGKTLPFNQGGTVSVKRLPVLTGEHIIDARA-GLDEMS 325

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPS 314
           +P V+I  D  G R   + TR+ IG P+A         A                Q+   
Sbjct: 326 QPQVNIVLDAAGGRIMSDFTRNKIGYPMATAFSEYRQDAAGRSVVDTEVISVATIQSQLG 385

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
            +  I+G+ ++  A  LA +LRAGSL   + IVEER +G  LG+++I  G  A+  G+  
Sbjct: 386 SRFVITGSGSMAEAQQLALLLRAGSLTAPVVIVEERTIGPTLGAENIENGFQALAVGMGA 445

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNIL 433
            +LFM + Y + G VA+ ++  N++    L++LL  A LTLP IAG+VL +G+AVD+N+L
Sbjct: 446 TLLFMALWYRRLGWVANVALVANLVTLFGLMALLPGAVLTLPGIAGLVLTVGMAVDTNVL 505

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
           + ERIR+  R+  S+  ++ +GF RA +TI+D+N+T +I  +VL+  G G ++GFA+T+G
Sbjct: 506 IFERIRDMIRQGHSLARAIHLGFDRALTTIWDANLTTMITALVLYSIGNGPIQGFALTLG 565

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           L ++ S+FT + + RA++  +      + + I
Sbjct: 566 LGLMTSLFTGVFLSRALINLVWGQDTRRKVTI 597



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 91/250 (36%), Gaps = 5/250 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +        S  R +     + D    +    ++ L       G           +  + 
Sbjct: 349 IGYPMATAFSEYRQDAAGRSVVDTEVISVATIQSQLGSRFVITGSGSMAEAQQLALLLRA 408

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +     I     +GP +  E I  G   + +   A L+++ + ++      A   L+ 
Sbjct: 409 GSLTAPVVIVEERTIGPTLGAENIENGFQALAVGMGATLLFMALWYR-RLGWVANVALVA 467

Query: 703 DITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           ++    G  AL  G    L  +A ++  +G +V+  V++++R+R  ++      S    I
Sbjct: 468 NLVTLFGLMALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDMIRQ---GHSLARAI 524

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
               +  L      ++   I+ L +   G   I  FA+ +  G++ +  + +F++  ++ 
Sbjct: 525 HLGFDRALTTIWDANLTTMITALVLYSIGNGPIQGFALTLGLGLMTSLFTGVFLSRALIN 584

Query: 822 FIYDWRAKNA 831
            ++    +  
Sbjct: 585 LVWGQDTRRK 594


>gi|296156420|ref|ZP_06839258.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. Ch1-1]
 gi|295893019|gb|EFG72799.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. Ch1-1]
          Length = 1061

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 67/548 (12%), Positives = 155/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++        +  +  +P  +P + +          H       
Sbjct: 10  RPIFAGVLSVLILLAGVISLF-----KLPISEYPEVVPPSVV---------VHAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAEAVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTNPDLATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGITTIKSSPTLTMVVHLISPNNRYDMTYLRNYALLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N      + G          Q 
Sbjct: 176 EVQLWGSGDYAMRVWLDPQKVAQRGLTATEVVNAIREQNIQVAAGVIGASPSVPGTQLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      I    +      
Sbjct: 236 SVNARGRLRTE-------------GEFGDIIVKTAPDGGVTYLRDIARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +        L           +          S   
Sbjct: 283 LLDNKPAVALAINQAPGANSLAISDQVRSAMKELAEDMPAGVEYKIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLSARDATYKAMQEVSGPIIAIALTLVAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   ++R    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAMLLRSHGAKEDFVTRVMNRLLGGFFK 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 RFNKVFHR 530



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSVLSALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+ +    G  +  +  I + FG+
Sbjct: 960  -LEHDGHTPLSAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 59/140 (42%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAIVVVENVERNI- 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGI 805
                +S RD   K++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 424 --ENGLSARDATYKAMQEVSGPII-AIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALSAMLLR 500


>gi|160895949|ref|YP_001561531.1| hydrophobe/amphiphile efflux-1 family protein [Delftia acidovorans
           SPH-1]
 gi|160361533|gb|ABX33146.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Delftia
           acidovorans SPH-1]
          Length = 1051

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/571 (11%), Positives = 153/571 (26%), Gaps = 39/571 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G +      L +  + ++P   P   +          +       
Sbjct: 8   RPIFAWVVALFIIVLGGIA-----LTKLPIAQYPKVAPPAIV---------INTAYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   +            +      IT+SF      +     V   L  
Sbjct: 54  AKVLEDSVLSVIEREMNGSPGLVYMESVAQADGTGSITISFEAGTNVDLAQVDVQNRLSR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIGISEST 180
              +L     +  +         ++    + +       +       R  + +I      
Sbjct: 114 ATPRLPASVTQQGVRVDKASSNFLLFIMLSSEDAKAYDTVALGDYASRNIVPEIQRVAGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +    DP++L+    +   ++      N        G           
Sbjct: 174 GQAQLFGT-EKAMRIWFDPAKLQGYKLSAEDVTAAIRSQNAQVASGAIGDLPNITGQKIA 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V    ++S                +    +                 +          
Sbjct: 233 ATVTVMGQLS-------------SIGQFENIVLRANPDGSTVRLKDVATVEIGGQAYATS 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T +        L+          +   +      S  
Sbjct: 280 ARLNGKDAVGIGVQLTPSGNALATAKAVHARMEELQKFFPKGVKYSIPYDSSKFVSISIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+F+ +   ++ L+    + + ++ T A++  +G ++ + ++ G+
Sbjct: 340 KVAHTLLEAIVLVFLVMFLFLQNWRYTLIPTIVVPIALLGTFAVMQAVGFSINVLAMFGM 399

Query: 421 VLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E +      +      +      +    I    +  +   + L F
Sbjct: 400 VLVIGIVVDDAIVVVENVERIMSEEGLQPREAAIKAMGQISGAIVGITLVLIAVFIPLAF 459

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           F    G   R F+I M  SI  S F A+++  A+   +     +K ++            
Sbjct: 460 FAGSTGNIYRQFSIVMVASISFSAFMALTLTPALCATL-----LKPVEAGHHHEKKGFFG 514

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTH 567
                F R+     G        S+ ++  +
Sbjct: 515 WFNRTFARSAKSYEGWVARLLKRSVLMIGVY 545



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 91/241 (37%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     Q    S +    +   +       G+++A  + +    +++ +  P 
Sbjct: 261 VRLKDVATVEIGGQAYATSARLNGKDAVGIGVQLTPSGNALATAKAVHARMEELQKFFPK 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      K     I K    ++ + + + + +++  + W + L     + + +  T
Sbjct: 321 GVKYSIPYDSSKFVSISIEKVAHTLLEAIVLVFLVMFLFLQNWRYTLIPTIVVPIALLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+ A+  ++ +IG  V+D +VV + +     +    +  R+   K++ +
Sbjct: 381 FAVMQAVGFSINVLAMFGMVLVIGIVVDDAIVVVENV--ERIMSEEGLQPREAAIKAMGQ 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +P+A + GS       F+I M   I  +A  ++ +   +   + 
Sbjct: 439 ISGAIVGITLVLIAVFIPLAFFAGSTGNIYRQFSIVMVASISFSAFMALTLTPALCATLL 498

Query: 825 D 825
            
Sbjct: 499 K 499



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/202 (11%), Positives = 69/202 (34%), Gaps = 8/202 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G     +L   + I     + +A+ + +   ++ W   
Sbjct: 836  DAMDEMEKLAAKLPEGFGFEWTGQSREEKLAGSQAIFLYAFAILAVFLCLAALYESWSIP 895

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  I  + L +   +    L     ++     ++T+IG S  + +++ +  +    L   
Sbjct: 896  LSVILVVPLGLLGVVLATLLRNYSNDVYFQIGLVTVIGLSAKNAILIVEFAKD---LQAE 952

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAAS 810
                 +   ++ +      + TS+A  + V+P+ +  G+      +    +  G++    
Sbjct: 953  GKGLIEAALEAAHLRFRPIIMTSLAFGLGVVPLVIATGASSASQRAIGTGVLGGMITGTV 1012

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             ++       + +        +
Sbjct: 1013 LAVLFVPTFFVVVRKLFKGKIK 1034


>gi|227536162|ref|ZP_03966211.1| possible acriflavin resistance protein D [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227244059|gb|EEI94074.1| possible acriflavin resistance protein D [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 1032

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 76/570 (13%), Positives = 181/570 (31%), Gaps = 39/570 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +      +   +I  +G++        Q  +  FP   P               +V    
Sbjct: 9   KKPVLAGVFSLLIVILGVV-----GWKQLGIREFPLTEPPV-----------ISVVTFYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    +E  +            R+  + I++ F      E+  + V   +
Sbjct: 53  GASPDVIASKITRPMEESIAEANGIRTISSESREQVSVISIEFNREMDIEDALNDVRDKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +L  D    ++   +  +  +   +   D       E S        D++     
Sbjct: 113 SKARKQLPADVDPPIVQKASSPDNLVAFLEVESD--TKDIKEVSHIASTVIKDRVQSIPG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP +L     T   +    +  N               S   
Sbjct: 171 INNVAIVGEHKYAMRLRFDPIKLAAYRLTPEDIRQALLRENIDVPSGRVEGNNSELSIRT 230

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  + +                 ++ +V  + + +   +               +++
Sbjct: 231 LGRLTTEND----------------FNEMIVKQTENSVIRLKDVGSAELGEMNERTAIIN 274

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                  V        +   +    ++        LR         IV      +   S 
Sbjct: 275 ETGNLNRVGIGVAIQIQRGANAIQVVDEFYKRLDQLRKDIPSEYRLIVGFDFTQSVRESI 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              + T  I  GLV+I++F+ +   +  ++   +I ++++    ++ + G ++ + ++ G
Sbjct: 335 KEVEETLFIAFGLVVIIIFLFLRDWRSTIIPVIAIPVSILSAFFIMYISGFSINVLTLLG 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IGL VD  I+V E I ++  +      +   G    Y  +  + IT     + + F
Sbjct: 395 LVLAIGLVVDDAIVVLENIYKKIEEGMPPIQAAFKGSKEIYFAVISTTITLAAVFLPIVF 454

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            GG +    + FAI +  S+L+S F A+++   +  + ++ K+           FF+  +
Sbjct: 455 MGGISGQLFKEFAIVVSGSVLVSAFVALTLTPMLSAYFLKKKEGPGWFYRVTEPFFVRMN 514

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFT 566
                 ++A      ++ +F I +  L++ 
Sbjct: 515 NGYAHLLKAFMRARWLAWIFLIVTTGLIYF 544



 Score = 90.5 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 86/241 (35%), Gaps = 12/241 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L  +                 + +  Q        +V++   K++ ++      +   
Sbjct: 261 AELGEMNERTAIINETGNLNRVGIGVAIQIQRGANAIQVVDEFYKRLDQLRKDIPSEYRL 320

Query: 656 IVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           IVG   ++ +          + +    + ++I++++R  W   +  +  + + I      
Sbjct: 321 IVGFDFTQSVRESIKEVEETLFIAFGLVVIIIFLFLR-DWRSTIIPVIAIPVSILSAFFI 379

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G   N+  +  ++  IG  V+D +VV + +    K     +       K   E   
Sbjct: 380 MYISGFSINVLTLLGLVLAIGLVVDDAIVVLENI---YKKIEEGMPPIQAAFKGSKEIYF 436

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + T++      LP+   G   G +   FAI ++  ++V+A  ++ +   +  +    +
Sbjct: 437 AVISTTITLAAVFLPIVFMGGISGQLFKEFAIVVSGSVLVSAFVALTLTPMLSAYFLKKK 496

Query: 828 A 828
            
Sbjct: 497 E 497



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 50/385 (12%), Positives = 134/385 (34%), Gaps = 24/385 (6%)

Query: 464  FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            + +   +    ++  +        +   M +  ++      ++  A+  F+   ++ K +
Sbjct: 639  YGAASASFRGFLLFPYLPPTIGSRYGGGMPVQFVLQAQDLDTLTAALPKFLNAVRQSKKL 698

Query: 524  DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC-------LLFTHGLNYGIDFK 576
             +   +   +    I I   R +   +G+SI     ++          +    +   +  
Sbjct: 699  -MFADADLKINKPEIKINIDRQKAALMGVSIEEVARTLQLSLSGLRYAYFLRNDRQYEVI 757

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G ++  +  N   DL+ +     + Q+  ++      E      +      + A      
Sbjct: 758  GQMKRELR-NDITDLNSIYVRSNNGQLIPLNNLITTEEAVSPAAIYRYDQFTSATVSAAP 816

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELI--------RKGIVGVIISAIAMLIYIWI-- 686
                 + E +       TE++G      L          +G +   +    ++IY+ +  
Sbjct: 817  APGVSLAEGIEEIERIKTEVLGENFKTSLAGQSRDYRESQGNIAFTLILALVIIYMILAA 876

Query: 687  -RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                    L  + T+ + +T  +     FG   N+ +   ++TL+G    + +++ +   
Sbjct: 877  QFESLRDPLTIMLTVPMAVTGAILSLHWFGQSLNVFSQIGIITLVGLITKNGILIVEFAN 936

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
                L  T +S  +   ++  +     + TS+A     LP+A    +   S  I +A G+
Sbjct: 937  ---HLKDTGLSKFEAAIQAAEQRFRPILMTSLAMIFGALPIA-LTANSRQSLGIVIAGGL 992

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            V +   ++FI   +  ++   + + 
Sbjct: 993  VFSGILTLFIIPAVYSYLSSSKRRK 1017


>gi|254240455|ref|ZP_04933777.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter [Pseudomonas aeruginosa 2192]
 gi|126193833|gb|EAZ57896.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter [Pseudomonas aeruginosa 2192]
          Length = 1045

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 77/684 (11%), Positives = 189/684 (27%), Gaps = 43/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPVFAWVISLLIVLAGVLAI-----RFLPVAQYPDIAPPVV---------NVSASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +    Q  +TL+F      +  A +V   L+ V
Sbjct: 54  AKVVEEAVTAIIEREMNGAPGLLYTKATSSTGQASLTLTFRQGVNADLAAVEVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +++ +      +   ++           A+E         +  +   E   +
Sbjct: 114 ESRLPESVRRDGIYVEKAADSIQLIVTLTSSSGRYDAMELGEIASSNVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP++L  +  + + +       N        G   + DS      
Sbjct: 174 VETWGA-EYAMRIWPDPAKLTSMNLSASDLVNAVRRHNARLTVGDIGNLGVPDSAPISAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+    +                 +                      +    +       
Sbjct: 233 VKVDDTL-------------VTPEQFGEIPLRIRADGGAIRLRDVARVEFGQSEYGFVSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L           +          S    
Sbjct: 280 VNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSYNIPYDTSAFVEISIRKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+++ +   +  L+    + + ++ T  ++  LG ++ + ++ G+VL
Sbjct: 340 VSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  S   +      +    I    +  +   V + FF 
Sbjct: 400 AIGILVDDAIIVVENVERLMAEEGLSPHDATVKAMRQISGAIVGITVVLVSVFVPMAFFS 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+T+ +SI  S F A+S+  A+   +          +       +   L 
Sbjct: 460 GAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLRPIDADHHEKRGFFGWFNRAFLR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                 + +A    R   W +  +++  + ++  +         + +G   + V+     
Sbjct: 520 LTGRYRNAVAGILARPIRWMLVYALVIGVVALFFVRLPQAFLPEEDQGDFMIMVMQPEGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            ++   +N+  ++      +       + V      GD  +   +   +K          
Sbjct: 580 PMAETMANVGDVERYLAEHEPVA--YAYAVGGFSLYGDGTSSAMIFATLKDWSERREASQ 637

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            +        +    L  + +  +
Sbjct: 638 HVGAIVERINQRFAGLPNRTVYAM 661



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 82/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +        L        ++VA  + +     +++   P     
Sbjct: 263 DVARVEFGQSEYGFVSRVNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSY 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N            IRK +  ++ + + +   +++  + +   L     + + +  T    
Sbjct: 323 NIPYDTSAFVEISIRKVVSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVM 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  +  ++  IG  V+D ++V + +     +    +S  D   K++ +  G 
Sbjct: 383 LGLGFSINVLTMFGMVLAIGILVDDAIIVVENV--ERLMAEEGLSPHDATVKAMRQISGA 440

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  ++      +PMA + G+V      FA+ +A  I  +A  ++ +   +   +  
Sbjct: 441 IVGITVVLVSVFVPMAFFSGAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLR 497



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 89/263 (33%), Gaps = 11/263 (4%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            GID  G + +       V L+       +L    ++  N     N   +         A 
Sbjct: 776  GIDDIGRLHVRNEQGEMVPLATFAKAAWTLGPPQLTRYNGYPSFNLEGQAAPGYSSGEAM 835

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              + ++++     I    + Q+ E              +  + +  I  L    +   W 
Sbjct: 836  QAMEQLMQGLPEGIAHEWSGQSFEERLSGAQAP----ALFALSV-LIVFLALAALYESWS 890

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I  + L +   L   +L G+  ++     ++T+IG S  + +++ +  +     Y
Sbjct: 891  IPLAVILVVPLGVLGALLGVSLRGLPNDIYFKVGLITIIGLSAKNAILIIEVAKD---HY 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S      ++    L   V TS+A    V+P+A+    G     +    +  GIV A
Sbjct: 948  QEGMSLLQATLEAARLRLRPIVMTSLAFGFGVVPLALSSGAGSGAQVAIGTGVLGGIVTA 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F+     L +        
Sbjct: 1008 TVLAVFLVPLFFLVVGRLFRLRK 1030


>gi|323135539|ref|ZP_08070622.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocystis sp. ATCC 49242]
 gi|322398630|gb|EFY01149.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocystis sp. ATCC 49242]
          Length = 1047

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/550 (12%), Positives = 142/550 (25%), Gaps = 40/550 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +           +  +P   P               + +    
Sbjct: 10  RPIFAAVLSVLLTIAGAIA-----QRSLPVSEYPEIAPPT-------------VNITATY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +     +   + +   +    I + F      +     V  
Sbjct: 52  PGASAEVIAQTVASPIEQEVNGVDDMLYIASQSTGDGLLSINVVFKTGVNIDLAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +V        +++               S        D +   
Sbjct: 112 RVAIATPRLPEEVQRFGVVVKKASPDLMMVVHLVSPDGSRSQQYISNYATLYVRDILARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP ++     T  ++       N               + 
Sbjct: 172 EGVGDVRVFGARDYSMRVWLDPEKIAARGMTAGEVIAALRAANLQVAAGAINQPPAGSAG 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V     ++                    DI        +        +       
Sbjct: 232 AFQLSVRTLGRLTDAAEF--------------SDIVLRADADGQVRLRDVARVEIGAQDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            K   +   T E         R          V          
Sbjct: 278 TVNAYLNRDPATAMAIFQKPGSNALATAEAVKAAMIEARKQFPAGLDYSVVYNPTEFIQQ 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+ V+ + +   +  ++   +I +++I + A++ L+G T    S+
Sbjct: 338 SVDEVVRTLGEAIILVVFVVILFLQTWRAAVIPVIAIPVSLIGSFAIMKLVGLTFNTLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E +        +   +          A   I        I  
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERYLDHGMTPKEAAHKTMDEVGGALIAIALVLCAVFIPV 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   + FAIT+  + LIS F ++++  AM   +++ +  +      L+     
Sbjct: 458 AYITGLQGAFYKQFAITIATATLISAFVSLTLSPAMAAVLLKPRSEEKEATGRLAVVMRP 517

Query: 535 PDCIAIQFMR 544
            D    +F R
Sbjct: 518 IDVFFERFNR 527



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/389 (11%), Positives = 121/389 (31%), Gaps = 17/389 (4%)

Query: 450  CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
             +++     A + I D+ +  L    V     GG ++G+    G   L  +  A   +  
Sbjct: 654  EAIEADVRTALAPIKDAFVFVLAPPAVPGIGTGGGLKGYVQDRGGHSLAELEGATWALAG 713

Query: 510  MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR--ARFWGVGISILFSICSICLLFTH 567
             ++      +  ++      + F   D    + +          +SI      +      
Sbjct: 714  PLMHTPGVTQAFTLFNTHTPQIFADIDRTKAEMIGVPISRVFETMSIYLGSIFVNDFNIL 773

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
            G  Y +  +      +  +   +L    ++ +   +G I+          + R    P  
Sbjct: 774  GRTYRVMAQADSPYRLTLSDIANLKTRSASGDMTPLGAIATFRDATGPFRVPRYNLYPAA 833

Query: 628  S-------VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                       +     + +KI                    +       +   ++ + +
Sbjct: 834  ELQLDLQHGVSSGQGIAMVEKIAAEKLPQGYGFEWTEIALQEKLAGNTAGLAFGLAVVFV 893

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +   ++     L  I  + + +   +    + G++ N+     ++ LIG +  + ++
Sbjct: 894  FLLLAALYESVTLPLAVILIVPMCVLAAMTGVTMRGLDRNILVEIGLVVLIGLAAKNAIL 953

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  R   +             ++    L   + TS+A  + VLP+ V    G  +  S
Sbjct: 954  IVEFAR---QGEEEGKDRFTASIEAARTRLRPILMTSLAFVLGVLPLVVSHGAGAEMRQS 1010

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              + +  G++      + I  PI   +  
Sbjct: 1011 LGVAVFSGMIGVTFFGL-IFTPIFYALVR 1038



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 99/252 (39%), Gaps = 7/252 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A+  V L  V       Q   ++          +   Q    +++A    ++    +  
Sbjct: 257 DADGQVRLRDVARVEIGAQDYTVNAYLNRDPATAMAIFQKPGSNALATAEAVKAAMIEAR 316

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLIL 702
           +  P     +      +  ++ + + +  +  + I ++ + I     W  A+  +  + +
Sbjct: 317 KQFPAGLDYSVVYNPTEFIQQSVDEVVRTLGEAIILVVFVVILFLQTWRAAVIPVIAIPV 376

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  +     L G+ FN  ++  ++  IG  V+D +VV + +    +     ++ ++   
Sbjct: 377 SLIGSFAIMKLVGLTFNTLSLFGLVLAIGIVVDDAIVVVENV---ERYLDHGMTPKEAAH 433

Query: 763 KSINETLGRSVYTSM---AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K+++E  G  +  ++   A FI V  +    G+    FAI +A   +++A  S+ ++  +
Sbjct: 434 KTMDEVGGALIAIALVLCAVFIPVAYITGLQGAFYKQFAITIATATLISAFVSLTLSPAM 493

Query: 820 LLFIYDWRAKNA 831
              +   R++  
Sbjct: 494 AAVLLKPRSEEK 505


>gi|227820649|ref|YP_002824619.1| AcrB/AcrD/AcrF family protein [Sinorhizobium fredii NGR234]
 gi|227339648|gb|ACP23866.1| AcrB/AcrD/AcrF family protein [Sinorhizobium fredii NGR234]
          Length = 1061

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/505 (11%), Positives = 137/505 (27%), Gaps = 31/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +    +  +P  +P   +                  
Sbjct: 10  RPVFAGVLSVLIFVAGLI-----GMTGLPISEYPEVVPPQIV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PSVIAETVATPLEEQINGVEGMLYMQSQATADGLMTLTVTFELGTDPDQAQQLVQNRVAQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   E   
Sbjct: 116 AEPRLPEEVRRLGVTTVKSSPDLTLVVHLISPNGQYDINYLRNYGVLNVKDRLARVEGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +     + ++      N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRVWIDPEKAAERGLAASDIANAIRGQNVQAAAGVIGASPSVAGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                      +                 +    A      
Sbjct: 236 SVNAQGRL-------------RTPEDFAEIVVKSGENGEITRLGDVARVEMGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     E      A L+          +          S   
Sbjct: 283 LLDNKAAVGMGVFQAPGSNAIQISENIHKAMAELKQTMPEGVDYEIVYDTTQFVRASIES 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T A++ + G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVLVVIVFLQTWRASIIPLVAVPVSIVGTFAVMYVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAQGLSPVQATYRAMQEVSGPIIAIALVLVAVFVPLAFIT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTA 503
              G   R FA+T+ +S +IS F +
Sbjct: 463 GLTGQFYRQFALTIAISTVISAFNS 487



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 80/232 (34%), Gaps = 17/232 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     +      G     +        +  +  + E V  +I 
Sbjct: 270 RVEMGAADYSLRSLLDNKAAVGMGVFQAPGSNAIQISENIHKAMAELKQTMPEGVDYEIV 329

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   +    +V ++               W  ++  +  + + 
Sbjct: 330 YDTTQFVRASIESVVHTLLEAIALVVLVVIV-----------FLQTWRASIIPLVAVPVS 378

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+      +S      +
Sbjct: 379 IVGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIAQ---GLSPVQATYR 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           ++ E  G  +  ++      +P+A      G     FA+ +A   V++A +S
Sbjct: 436 AMQEVSGPIIAIALVLVAVFVPLAFITGLTGQFYRQFALTIAISTVISAFNS 487



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I   L    L G + N+     ++ L+G S  + +++ +  R+   L  +  S     
Sbjct: 915  MGIMAALTGVWLTGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE---LELSGSSAVSAA 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + TSMA  + V+P+      G  +  +  + +  G++   +  IF+   
Sbjct: 972  IEASRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRSAMGVAVFAGMIGVTAFGIFMTPV 1031

Query: 819  ILLFIYDWRAKN 830
              + I     + 
Sbjct: 1032 FYVLIRKLSGER 1043


>gi|298346868|ref|YP_003719555.1| protein export protein SecF [Mobiluncus curtisii ATCC 43063]
 gi|298236929|gb|ADI68061.1| protein export protein SecF [Mobiluncus curtisii ATCC 43063]
          Length = 371

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 133/312 (42%), Gaps = 14/312 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL- 584
                  L     +   ++ R   + +  +    S+  +   GLN  I+F GG +  V  
Sbjct: 4   YAQWGNALYSGKKSYGIIKNRRIPLTVGAILMAISVIGIAIFGLNPSIEFTGGAEFVVTN 63

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +        + +++  + + +     G     V+   QP D   + +        +  
Sbjct: 64  TVKNPPQQPAYNAVKAAGLNEQTKVAQMGTNGLRVQTSQQPNDVELKIQQELAKAYHV-- 121

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
                   +   +GP     + ++ +VG+++    + + +   F+ W  +  A+  L+ D
Sbjct: 122 ---DIKKVSKTSIGPSWGASVSKQALVGLLVFMGMIAVLLMAYFRTWTMSFSALFALLHD 178

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLI 761
              TLG FA   IE     +  +LT++GYS+ D VVV+D++R+N +     +   + +L 
Sbjct: 179 FLITLGVFAYTHIEITPATIIGLLTILGYSLYDTVVVFDKIRENTRDMFNQSRSKYNELA 238

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           + SIN+T+ RS+ TS+   + V  +        G S +   ++P+  G++V   SSIFIA
Sbjct: 239 NLSINQTMVRSINTSITGILPVSAILFLGAALLGTSTLLDISMPLFIGMIVGTFSSIFIA 298

Query: 817 APILLFIYDWRA 828
            P+L  I     
Sbjct: 299 TPMLTLIRGRSQ 310


>gi|171316132|ref|ZP_02905357.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MEX-5]
 gi|171098736|gb|EDT43530.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MEX-5]
          Length = 1047

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 54/571 (9%), Positives = 144/571 (25%), Gaps = 42/571 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I  +GL+       P+  + R+PS  P               + +   
Sbjct: 7   RRPVFAWVIALFIILLGLIAI-----PELPVARYPSVAPPT-------------VTITAT 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +    Q +IT +F           +V 
Sbjct: 49  YPGATPQTMSDSVLSLIERELSGVRNLLYFESSADTSGQAQITATFKPGTDSAMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V  +L    ++N ++  +     ++      +         +  + R  ++ +  
Sbjct: 109 NKLKSVEPRLPPVVRQNGVIVQSAATGFLLFVGLKSESGRYDENALADYMARNVVEDLRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP +L     +   ++      N        G       
Sbjct: 169 VEGVGKVQLFGS-EQAMRIWVDPQKLITYGLSMNDLTTAVSQQNVQIAPGSLGAAPALSG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +        +        +      
Sbjct: 228 QRVTVPLTAQGQLT-------------TPEQFAKIVLRANANGSKVVLGDVARVELGPQA 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T +       M+           +         
Sbjct: 275 FTFVNSENGKPATFAGVQLAPGANAVKTAQAVREQLDMIARTMPAGMTYSIPFDTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++ + G ++ + +
Sbjct: 335 ISIEKVVHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAMLGTFTVMLMTGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMMEEGLSPKDATIKAMREITGAIIGITLVLTAVFL 454

Query: 476 VLFF----FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
            +       G    +         +  ++             +   +            F
Sbjct: 455 PMAMSSGSVGVIYQQFTLSMAVSIMFSALLALTLTPALCATMLKPVEHGHHEKRGFFGWF 514

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSIC 562
               D + + +       VG +    +  + 
Sbjct: 515 NRRFDRLTLWYETRVGRLVGRTGRVMLLFVA 545



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 79/230 (34%), Gaps = 14/230 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q              F         ++V   + +      I   +
Sbjct: 258 SKVVLGDVARVELGPQAFTFVNSENGKPATFAGVQLAPGANAVKTAQAVREQLDMIARTM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I K +  ++ + + + + +++     R+    A+ A   + 
Sbjct: 318 PAGMTYSIPFDTAPFVKISIEKVVHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAM- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T     + G   N+  +  ++  IG  V+D +VV + +     +    +S +D  
Sbjct: 377 ---LGTFTVMLMTGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMMEEGLSPKDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
            K++ E  G  +  ++      LPMA+  GSV      F + MA  I+ +
Sbjct: 432 IKAMREITGAIIGITLVLTAVFLPMAMSSGSVGVIYQQFTLSMAVSIMFS 481



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 63/150 (42%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L +   LG   L G+  ++     +
Sbjct: 865  QAPMLMALSMVVVFLVLAALYESWAIPLSVMLVVPLGLIGALGAVMLRGLPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L        +   +S    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAK---QLREEGKGLIEAAVQSSKLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             +  G       +    +  G++ A   +I
Sbjct: 982  VIASGASSETQHAIGTGVLGGMITATVLAI 1011


>gi|94969844|ref|YP_591892.1| hydrophobe/amphiphile efflux-1 HAE1 [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551894|gb|ABF41818.1| Hydrophobe/amphiphile efflux-1 HAE1 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1043

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 73/535 (13%), Positives = 158/535 (29%), Gaps = 40/535 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   +I   G +       P   + +FP   P               + +   
Sbjct: 8   RRPVFATVCSLLIILAGAIAI-----PTLPIAQFPQLAPP-------------QVTVTAF 49

Query: 62  EDDFVNGFLQMYSDEL-RSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
            +   +  ++     L    +   EG+   S     +   +IT +F   R  +  A  V 
Sbjct: 50  YNGANSQAVETSVTTLLEQAINGAEGMNYISSVSGNDGTSQITATFHLERNLDIAAVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                   +L  + ++  +         I+ +    D+     +  S  +     D +  
Sbjct: 110 NRASSALGRLPAEVQQTGVTVGKNSGTFIMAAGFYSDKGQYDQLFISNYLDLYVRDALKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +     +        +    DP RL +   T   +       N        G   +   
Sbjct: 170 IKGVGDVIIFGERKYAMRLWLDPVRLAKRSLTAQDVVNALREQNVQVAAGQVGQAPIAKG 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V     +              +  +    I                        
Sbjct: 230 QNFQISVRAVGRL-------------REAKEFEAIILKRGADGSLVQLRDVGRAELGAES 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                               +  +     +      + L A   P     +      A  
Sbjct: 277 YAGNLSYNGYDAIGIGVQQLSTANALDVDKAVKDELSRLSAKFPPGLKYQIAFDTTTAVG 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      +V++V+F+ +   +  L+   +I +++I T A + L G ++   +
Sbjct: 337 ESIREVLTTLVEAIIIVILVIFLFLQSWRSTLIPAITIPVSLIGTFAFVKLFGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + GI L  GL VD  I+V E +     +  +    + ++      S +  +++  +   +
Sbjct: 397 LFGITLATGLVVDDAIVVIENVERHLEEGIRDPRRASEVAMGEVTSAVIATSLVLIAVFI 456

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            +  F    G   + FA+T+  SI +S F A+++  A+   ++R+   K   I  
Sbjct: 457 PISLFPGSTGRLYQQFALTIAFSIGLSAFNALTLTPALSALLLRHSSEKKNPIFR 511



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 59/146 (40%), Gaps = 5/146 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    T+ + +  T  F  LFG   N   +  +    G  V+D +VV + +    
Sbjct: 363 SWRSTLIPAITIPVSLIGTFAFVKLFGFSINTLTLFGITLATGLVVDDAIVVIENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
            L       R   + ++ E     + TS+      +P++++ GS       FA+ +AF I
Sbjct: 421 HLEEGIRDPRRASEVAMGEVTSAVIATSLVLIAVFIPISLFPGSTGRLYQQFALTIAFSI 480

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
            ++A +++ +   +   +    ++  
Sbjct: 481 GLSAFNALTLTPALSALLLRHSSEKK 506



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 86/246 (34%), Gaps = 10/246 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V     +       +           +++ +        + A           + ++  
Sbjct: 784  YVRSDSGQMVPLDNLVTVKETTTSSVIEHYNIFRTTAINGAAAPGYSSGQAIAAMEDLAK 843

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWI---RFKWYFALGAITTLILD 703
             +           ++ E I+ G   +I  +   +++Y+ +      +      +  + + 
Sbjct: 844  QALPVGYTFEWTGLTLEEIQSGSQAIILFALGLLVVYLTLSAQYESFVLPFIILLAVPMA 903

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I   LG   L G + ++     ++ LIG +  + +++ +   + ++     +   +   +
Sbjct: 904  IFGALGAQFLRGQQNDVYCQIGLVMLIGLASKNAILIVE-FAEQLQ--MKGMGLFESAVE 960

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + TS+A  + VLP+      G +   S    +  G++++   ++FI   + 
Sbjct: 961  AARLRLRPILMTSIAFILGVLPLVFATGAGSAGRNSVGTTVFGGMIISTFLNLFIIPILY 1020

Query: 821  LFIYDW 826
            + +  +
Sbjct: 1021 VIVRSF 1026


>gi|86749685|ref|YP_486181.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           HaA2]
 gi|86572713|gb|ABD07270.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           HaA2]
          Length = 1047

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 87/678 (12%), Positives = 188/678 (27%), Gaps = 44/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                  L  +I  +G L  +     +  + ++P  +P               + +    
Sbjct: 9   RPVLSNTLAFLIILLGALSLM-----RLPVSQYPDVVPPT-------------VSVTATY 50

Query: 63  DDFVNGF-LQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                   +   +  +   +   EG+         +    + ++F      +     V  
Sbjct: 51  PGASARTVMDSVALPIEQQVNGVEGMIYMQSTSASDGSYSLVVTFDIGTNPDMAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   +++L        L    +    +              +  +        +++   
Sbjct: 111 RVSLASAQLPTSVSTQGLNVKKKSTAILQFVSLYASDGKYDNLFLANYAKINLENELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP RL+    T + +     L ++     + G     D  
Sbjct: 171 PGVGDVSVLGSGSYAMRIWLDPDRLQSYGLTPSDVVSAIRLQSSEVTAGLVGGPPTPDMV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +    +++G          +    + +V  + DE G           +    A  
Sbjct: 231 NFQYAL----DVTGR-------FNEAADFEKIVVKAVDEGGGNLVRIGDIGRVELGAASY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          S  +  +     ++     A +           V   +      
Sbjct: 280 GQTATLDGKPSAAIAISLLSGANALTVAQSVNAKMAEMAKSFPAGLDYKVSFDSTKFITA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I A LVL+V+ + +   +  LV   ++ + +I   A +S++G T+   S+
Sbjct: 340 SVDEVYETLVIAAVLVLVVILLFLQDWRAMLVPATTVPVTIIGAFAAMSMMGFTVNTTSL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT---ALIAT 474
             +VL IG+ VD  I++ E +        S   +     S  +  I    +      +  
Sbjct: 400 FALVLAIGIVVDDAIVIVEGVARHIAGGMSSRDAAVKAMSELFGPIIGITLVLLAVFLPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   + FA+ +  + LIS   A+++        +R              F  +
Sbjct: 460 AALPGLTGKMYQQFALVIAATALISAVNAVTLKPTQCALWLRAPVPPEQRAFVYRAFNAV 519

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  +       V  SI  ++  + L+       G+ F G  ++        D    
Sbjct: 520 YARCETAYAALIRRLVAFSIPTTLVGLALI-------GVAFYGLSRVPTSFLPSEDQGYF 572

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +L+               K   +  Q    +SV     +  +    T           
Sbjct: 573 IVSLKLPDAASARRTEAAVAKAVDIVRQTAGVESVIGVSGISPLDNNATLYNAGMLYVVL 632

Query: 655 EIVGPKISRELIRKGIVG 672
                + S +L    IV 
Sbjct: 633 HDWDQRKSADLGIDAIVA 650



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/439 (11%), Positives = 126/439 (28%), Gaps = 24/439 (5%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
              ++  ++GI      A   N  +   +  +  + +S    +D   ++    +   +   
Sbjct: 604  VESVIGVSGISPLDNNATLYNAGMLYVVLHDWDQRKSADLGIDAIVAKVRQALQTIDTAT 663

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
             I  +     G G   GF + + +    S F A+    A            SI     + 
Sbjct: 664  AIVLMPPPIQGVGNSSGFTMMVEMKNGSSDFLAL--QNAAEQLAANASTQTSIANAASTF 721

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               +     +                       L +  +N    F    Q+ V A+ P  
Sbjct: 722  KGNVKQLRLVVDRIKAETLGVTVGQVFSAVESYLGSTYVNQFTKFNNVFQVYVQADAPFR 781

Query: 591  LSVVRSNLESLQIGDISFQNFDGE---------------KNFLVRLQYQPGDSVAQTRVL 635
            L         ++                             +          S   +   
Sbjct: 782  LQPADVLKLKVKGTGGQMVPLGAVAYLTDDVGPPLVTLYNLYPAATIVGSPASGFSSGEA 841

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694
              +  ++      S++           + +  +      ++ + +   +  +++ W   L
Sbjct: 842  MTLMSEVAAHSLPSSMGTAWTGMSYQEQVVGNQIYYVFAVALLLVYFVLAGQYESWLQPL 901

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
              I  + L +  T+    L G+  +L     ++ LI  +  + +++ +  R+        
Sbjct: 902  AVILAVPLTLLGTVAALELSGLPNDLYTQIGIVLLIALAAKNAILIVEYAREKCAE---G 958

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASS 811
            +   +   ++        + TS A    +LP+A   G+  G   S  I +  G++ +   
Sbjct: 959  MPAAEAAVEAARLRFRPILMTSFAFIFGMLPLAFASGAGAGARTSLGIAVVAGMLASTGL 1018

Query: 812  SIFIAAPILLFIYDWRAKN 830
            ++         +    ++ 
Sbjct: 1019 AVLFVPAFFTVLERLGSRR 1037



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 57/128 (44%), Gaps = 6/128 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       ++ G   N T++ A++  IG  V+D +V+ + +    
Sbjct: 365 DWRAMLVPATTVPVTIIGAFAAMSMMGFTVNTTSLFALVLAIGIVVDDAIVIVEGV---A 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +     +S RD   K+++E  G  +  ++      LP A   G        FA+ +A   
Sbjct: 422 RHIAGGMSSRDAAVKAMSELFGPIIGITLVLLAVFLPAAALPGLTGKMYQQFALVIAATA 481

Query: 806 VVAASSSI 813
           +++A +++
Sbjct: 482 LISAVNAV 489


>gi|187479402|ref|YP_787427.1| multidrug efflux system transmembrane protein [Bordetella avium
           197N]
 gi|115423989|emb|CAJ50542.1| multidrug efflux system transmembrane protein [Bordetella avium
           197N]
          Length = 1021

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/547 (12%), Positives = 157/547 (28%), Gaps = 39/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  +     +++       +  +  +P                      +  
Sbjct: 9   RRPVFASVLSLI-----IILIGLISYSRLAVREYPKIDEPIV---------SVDTTYKGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++L + ++   +     R  ++ I + F  SR  +  A +V   +  
Sbjct: 55  SPEVIESQVTKPLEDLLAGIEGVDVMTSRSRSERSLINIKFNLSRNPDAAAAEVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  + ++         I+            AI+ S  I R    ++ +     
Sbjct: 115 ARRFLPDEIDEPIIGKVEADSQPIIYISVES--GPYSAIQTSDYINRYIKTRLSVLPGAA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    D  +L     T   +       N          R    S  +  
Sbjct: 173 EVRVFGERLPSMRIYIDRDKLAAYKLTVQDVESALRSQNVEIPAGRIESRAREFSVVSST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                      +I    +            +    A      
Sbjct: 233 DLQTTGQFE--------------------NIIVANVKGYPVRLRDVAKVQIDAANDRVLS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + ++  +              L           +          S   
Sbjct: 273 RFNGKNAINIGITRQSTANPLELSSAVRTEVDRLNESLPAGMKLNISYDTSVFIERSIDS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F  +   +  LV   +I +++I   A++ + G ++   ++  +V
Sbjct: 333 VYHTIGEAIVLVVLVIFFFLRNLRASLVPIVTIPVSLIGACAIMYMFGFSINTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I            +   G       +    +T +     L F  
Sbjct: 393 LAIGLVVDDAIVVLENIFRHIENGMPRMQAAIQGSREIGFAVVAMTMTLVTVYAPLVFAT 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA+T+  ++L+S F A+++   M   ++R++K  +   N +  +       
Sbjct: 453 GRTGRLFIEFALTLAAAVLVSGFVALTLTPMMCAVLLRHEKRHNRCYNLIEGWLEALARG 512

Query: 539 AIQFMRA 545
             + +  
Sbjct: 513 YRRALGW 519



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 80/249 (32%), Gaps = 7/249 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PV L  V           +  +        +   +    + +  +  +     ++ E +P
Sbjct: 252 PVRLRDVAKVQIDAANDRVLSRFNGKNAINIGITRQSTANPLELSSAVRTEVDRLNESLP 311

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                N            I      +  + + +++ I+   +    +L  I T+ + +  
Sbjct: 312 AGMKLNISYDTSVFIERSIDSVYHTIGEAIVLVVLVIFFFLRNLRASLVPIVTIPVSLIG 371

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                 +FG   N   + A++  IG  V+D +VV + +    +     +       +   
Sbjct: 372 ACAIMYMFGFSINTLTLLAMVLAIGLVVDDAIVVLENI---FRHIENGMPRMQAAIQGSR 428

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     V  +M       P+    G        FA+ +A  ++V+   ++ +   +   +
Sbjct: 429 EIGFAVVAMTMTLVTVYAPLVFATGRTGRLFIEFALTLAAAVLVSGFVALTLTPMMCAVL 488

Query: 824 YDWRAKNAR 832
                ++ R
Sbjct: 489 LRHEKRHNR 497



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/131 (14%), Positives = 53/131 (40%), Gaps = 12/131 (9%)

Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            G + ++ +     IY+ +      W      + ++ L +T  L    L G   ++ +  
Sbjct: 845 SGSIYLVFAMALAFIYLVLAAQFESWRNPFIIMLSVPLSMTGALLALWLTGGTLSIYSQI 904

Query: 725 AVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            ++TL+G      +++ +   ++R+            + + ++    L   + T+ A  +
Sbjct: 905 GLITLVGLITKHGILIVEFANQLREE------GKDLMEAVVEASVLRLRPILMTTGAMVL 958

Query: 782 SVLPMAVWGGS 792
             +P+A+  G+
Sbjct: 959 GTVPLALASGA 969


>gi|325272466|ref|ZP_08138848.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           sp. TJI-51]
 gi|324102403|gb|EGB99867.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           sp. TJI-51]
          Length = 692

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/595 (12%), Positives = 163/595 (27%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLVLLIAGSISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   I    D++       
Sbjct: 116 TQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T + +       N        G      S   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    +      
Sbjct: 236 SINTQGRLVNEE-------------EFENIIIRAGADGEITRLKDIARVELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +     +      A L+          +         GS   
Sbjct: 283 LLNNQPAVALPIFQRPGSNAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTVFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+V
Sbjct: 343 VVHTLFEALVLVVLVVILFLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIGLGLKPLEATQKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         + L    L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKEHHAPKDRFSRLLEKLLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F RA    VG        S   LF +    G+ + G            D
Sbjct: 523 APFNRFFDRASHRYVGGVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQD 577



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 60/140 (42%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIG 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAVWG--GSVIGSFAIPMAFGI 805
           L        +   K++ E  G  + T++   A        + G  G     FA+ +A   
Sbjct: 425 LGLK---PLEATQKAMAEVTGPIIATALVLCAVFVPAA-FISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|302134296|ref|ZP_07260286.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 1047

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 72/632 (11%), Positives = 172/632 (27%), Gaps = 52/632 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P+  P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   +   D      +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLMIFTLSYTGDSANKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAVRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T++        L           V       
Sbjct: 275 QDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPEGVEFSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ LLG ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    IF   +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPAAATVKAMQQVSGAIFGITLVLAAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F GG      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 LLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLLKPIPAGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  + +    +  +     L        ++ +G + +
Sbjct: 515 GFNRLFGKFTDRYERVSSSMIKRAGRYMLLYVGIVGLLGFFYLRLPESFVPVEDQGYLII 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            V        +   +  + L+   +S +    
Sbjct: 575 DVQLPPGATRARTDATAQLLENYMLSREATGA 606



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   + ++    +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSVPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAIMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPAAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     ++     +LP+A  GGSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIFGITLVLAAVLLPLAFMGGSVGVIYQQFSLSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  +  LI+ +       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLVVMLIVPVGALGSVLAVTAVGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        V TS+A  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -DQGHSLRDAALQAARLRFRPIVMTSLAFILGVVPLTLATGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLF-IYDWRAKN 830
            A    + +     ++ +   R K 
Sbjct: 1009 ATLLGVVLVPIFFVWVLSVLRRKP 1032


>gi|283850142|ref|ZP_06367431.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio sp. FW1012B]
 gi|283574168|gb|EFC22139.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio sp. FW1012B]
          Length = 1052

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 76/613 (12%), Positives = 174/613 (28%), Gaps = 37/613 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              + +++  +I   GL            + ++P  +P              ++      
Sbjct: 9   RPVFSIVISLVIILAGLAAI-----KSLPIAQYPDIVPPE-----------VNVTTAYPG 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
              + +   +    ++  + +        +     +  +T++FA     +     V   +
Sbjct: 53  ASPEVIAATVAAPLEQQINGVDNMLYMRSTSSGDGSLSMTVTFAVGTNPDQNTINVNNRV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q   + L  + ++  +    +    + +           A+  S  ++   +D++     
Sbjct: 113 QAALTTLPTEVQRQGVTVRKKSSNILQVVTFESPTKRYDAVYISNYVLVNVLDELKRLPG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +     P +L QL  T   ++      N        G          
Sbjct: 173 VGDASIFGAQDYSMRVWLRPDKLAQLKLTPGDVATAIQEQNAQFAAGRIGAEPTNPDQ-- 230

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +   V   G  L            +    I   +             +         
Sbjct: 231 PVALNYMVTTKGRLLT---------PEEFENIILKAQPDGSVLRVKDVARVELGAKDYNS 281

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +T               +   T +      A L           V          S 
Sbjct: 282 VSKITGNPAVNIGIYLSPGANALATADLVTAKLAELSKRFPEGIAYKVPLDTTTFVRVSI 341

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV +V+F+ +   +  L+   ++ +++I T A +  LG T+   ++ G
Sbjct: 342 EEVVHTLVEAMILVFLVVFLFLQNFRATLIPCLAVPVSIIGTFAGMYALGFTINTLTLFG 401

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IG+ VD  I+V E +         S   +           +    +      V + 
Sbjct: 402 MVLAIGIVVDDAIVVLENVERIMTAEHLSPRLATAKAMEEVTGPVIAIVLVLCAVFVPVA 461

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFF 532
           F G   G   + FAIT+ +S++IS   A+++  A+   +      +  +           
Sbjct: 462 FLGGLTGQMYKQFAITIAVSVVISGLVALTLTPALCASLLKAGHREPNRFFRAFNRLFDK 521

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +     A      R   + +++   +C+  L     +  G+         +  N   D +
Sbjct: 522 VTDGYTASVSFLLRHVVIALTLFAVLCAGALALFRVVPGGLVPDEDQGYIIAVNILPDGT 581

Query: 593 VVRSNLESLQIGD 605
            +R+        D
Sbjct: 582 SLRATEHIDDAMD 594



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 53/139 (38%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + I  T       G   N   +  ++  IG  V+D +VV + +     
Sbjct: 366 FRATLIPCLAVPVSIIGTFAGMYALGFTINTLTLFGMVLAIGIVVDDAIVVLENV--ERI 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           +    +S R    K++ E  G  +   +      +P+A  G   G +   FAI +A  +V
Sbjct: 424 MTAEHLSPRLATAKAMEEVTGPVIAIVLVLCAVFVPVAFLGGLTGQMYKQFAITIAVSVV 483

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++ +   +   +  
Sbjct: 484 ISGLVALTLTPALCASLLK 502



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 70/200 (35%), Gaps = 7/200 (3%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            ++  QP D    +  L  + K    ++P            +         +V  +   + 
Sbjct: 824  KIMGQPADGHTSSEALAAMDKAAASVLPSDYTLAWTGSAYQEKAAQGSSMLVFGMGIVMV 883

Query: 680  MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            +LI      +W      I  +   +   +      G+  ++    A++TLIG +  + ++
Sbjct: 884  ILILAAQYERWSLPFAVIMAVPFALFGAIAAVFGRGLSNDIYFQIALVTLIGLAAKNAIL 943

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +     +       +  D    +        V TS+A  +  LP+A+    G +   +
Sbjct: 944  IVEFA---VLEVQAGKTLSDAALSAAKLRFRPIVMTSLAFILGCLPLAISTGAGANSRHA 1000

Query: 797  FAIPMAFGIVVAASSS-IFI 815
                +  G++ A   + +FI
Sbjct: 1001 IGTGVIGGMLGATLLAPLFI 1020


>gi|78061855|ref|YP_371763.1| hydrophobe/amphiphile efflux pump protein [Burkholderia sp. 383]
 gi|77969740|gb|ABB11119.1| Hydrophobe/amphiphile efflux pump, HAE1 family [Burkholderia sp.
           383]
          Length = 1057

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/585 (11%), Positives = 159/585 (27%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  +I  IGL+       P      +P  +P + +                  
Sbjct: 10  RPIFAVVLSIVIFAIGLISI-----PMLPAGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             + ++ ++F      +  A +V   +  
Sbjct: 56  PKEIAESVAEPLEEAINGVEGIMYMKSVAGSDGSLQVVVTFLQGVDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            ++     +     D++       
Sbjct: 116 ALSRLPDEVRQYGVTTQKQSPTPLMYVSLYSPDNSRDSLYLRNYLTLHVKDELSRLTGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +    DP+RL     T + +       N        G       +    
Sbjct: 176 DVGLSGSGDYAMRLWLDPNRLASRGLTASDVIAAVREQNVQVSAGQLGAEPSPKKNDFLL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +       +         I           
Sbjct: 236 SINVRGRL-------------RTVQEFSDIVLRTGDDGQVVKLSDVARIELGAGDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L     P                S   
Sbjct: 283 YFNDKPSAVVGIFLSPGANALEVAKAVYAKFDELSKRFPPGVAYRPVWDPTVFVRESIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G+V
Sbjct: 343 VQHTLIEAVVLVVLVVILFLQTWRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAQGLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   ++R        +       F  +  
Sbjct: 463 GVTGQFYRQFAVTIAISTVISAINSLTLSPALAAKLLRPHGAPKDALTRGLDRAFGWLFH 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R+     G           +   +             +
Sbjct: 523 PFNRFFDRSSDRYHGFVSRTLKRRGVVFAVYAALLAATTLLLNAV 567



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 82/243 (33%), Gaps = 11/243 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V +  + +   +     +   N     N +     +   S      L+ + K++    
Sbjct: 801  EMVPIGSMVTVAPAYGPDPVVRYNGYPAANLIGDADPKVMSSSQAIEKLQQIAKEVLPPG 860

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                  +        S       IV   ++ + + + +   ++ W   L  I  + + I 
Sbjct: 861  ITLEWTDLSYQQVTQSN----AAIVVFPLAVMLVFLVLASLYESWTLPLAVILIVPVCIC 916

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L    L G + N+     ++ L+G +  + +++ +  R+   L        +   ++ 
Sbjct: 917  AALFGVWLSGGDNNVFVQVGLVVLMGLACKNAILIVEFARE---LEIQGKGVIEAALEAC 973

Query: 766  NETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   V TS+A     +P+ + GG    V  +  I +  G++      +F+     + 
Sbjct: 974  KLRLRPIVMTSVAFIAGSVPLLIGGGAGSEVRAATGITVFAGMLGVTLFGLFLTPVFYVA 1033

Query: 823  IYD 825
            I  
Sbjct: 1034 IRK 1036



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  +  L G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAVWG--GSVIGSFAIPMAFGI 805
                +S RD   +++ E  G  V  ++   A    +   + G  G     FA+ +A   
Sbjct: 425 Q---GLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMA-FMSGVTGQFYRQFAVTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAINSLTLSPALAAKLLR 500


>gi|302339722|ref|YP_003804928.1| protein-export membrane protein SecF [Spirochaeta smaragdinae DSM
           11293]
 gi|301636907|gb|ADK82334.1| protein-export membrane protein SecF [Spirochaeta smaragdinae DSM
           11293]
          Length = 451

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 78/247 (31%), Positives = 138/247 (55%), Gaps = 1/247 (0%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               V+++ +R  L +     +        + FL+R+    G +        ++  +   
Sbjct: 149 TESAVEINQIRDALATFDNPQVQVVGDPSRQEFLLRIADPAGGNKDAYEKKIVLDLEKAF 208

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
               + ++ ++ VGP+ S++L  + +   I++ + +L+YIW+RF++ FA+ +IT L+ D+
Sbjct: 209 GDGTAVVKQSDYVGPRFSQDLASQSVSLTILALVLILVYIWVRFRFGFAISSITALVHDV 268

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              LGF  +F +E + T +AAVLT++GYS+ND +VV+DR+R+NM L         +ID S
Sbjct: 269 LIMLGFIGVFRLEVSTTTIAAVLTIVGYSLNDTIVVFDRIRENMGLM-KDRPMDVIIDTS 327

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           I ++L R++ TS+   ++VL +  +G   I  FA+ +  GIVV   SSIFIA+P+LL I 
Sbjct: 328 ITQSLSRTLMTSLTTLLAVLALYFFGTGAIKDFALNLIVGIVVGTYSSIFIASPVLLGIT 387

Query: 825 DWRAKNA 831
               K  
Sbjct: 388 RASDKRK 394


>gi|254502861|ref|ZP_05115012.1| RND transporter, HAE1 family [Labrenzia alexandrii DFL-11]
 gi|222438932|gb|EEE45611.1| RND transporter, HAE1 family [Labrenzia alexandrii DFL-11]
          Length = 1059

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 66/549 (12%), Positives = 153/549 (27%), Gaps = 32/549 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   GLL           +++FP+  P                      
Sbjct: 9   RPKFALVISIVITLAGLL-----GYVSLPVEQFPNITPPVV---------NVAATYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +   + +        +     N  + ++FA     +     V   +  
Sbjct: 55  AEVLEETVAAPIEAQVNGVDDMIYMQSTSNDSGNYSLNVTFAVGTDPDIATVNVQNRVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +  +N +         +++            +  S        D +   +   
Sbjct: 115 AASQLPSEVTQNGVTVQKASTNMLLVVTLYSPNGTYDELFLSNYASIYMKDSLARVQGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP RL  L  T           N        G   +      QY
Sbjct: 175 RADVMTDFAYAMRIWLDPDRLASLGMTPTDFINAVRDQNIQVAAGQIGAPPVPAGQQFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  ++                +    +                 + +         
Sbjct: 235 TIKAEGRLAEAE-------------QFEQIVLRTGSDGAVVTIGDVARVERGAQFYNASG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L           V          S + 
Sbjct: 282 QFNGQPSTVLAIYQAPGANALAVADAVKARLVSLSENFPEDVEYGVPFDTTDFVQQSLND 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV+ V+F+ +   +  ++   +I +++I T  +L  LG +L   S+  +V
Sbjct: 342 VISTLFLTFLLVVSVVFIFLGNWRATIIPTVAIPVSLIGTFGVLLALGMSLNTISLFALV 401

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +  + +  L   V   F 
Sbjct: 402 LAIGIVVDDAIVVVENVERIIADEGLGPKEATAKAMLQITGPVVATTLVLLAVFVPTIFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     FA+T+ +S++IS   A+++  A+   I++ +      I  +    ++   
Sbjct: 462 PGITGQLYSQFAVTISVSVVISSINALTLSPALCGLILKARSGPPKGIMGIFDRGIMSIR 521

Query: 538 IAIQFMRAR 546
                +  R
Sbjct: 522 DGYTAIVRR 530



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 71/218 (32%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             + R      D         ++       V                ++     IV  I+ 
Sbjct: 816  NMFRSAALMADPAPGASTGVVINAVEQAAVEAMPPGYAYEWTGTAQQQQGSGSIVMFILM 875

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y+++      W   +  + ++   +   L   A+ G + NL     ++ LIG  
Sbjct: 876  LSVIFTYLFLVAQYESWTMPVAILMSVTFALLGALVAVAVTGGDVNLYTQIGMIMLIGLG 935

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ +   +        +S +D   ++ +      + T+++  + V+P+      G
Sbjct: 936  AKNAILIVEFAIEQR---ENGMSIKDAAIEAAHLRFRAVMMTALSFLLGVVPLMTASSAG 992

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +   +    +  G+  A +  + +   +   +   R 
Sbjct: 993  AASQKAIGFAVFGGMFFATTIGVILIPVLYASLQSMRE 1030



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 3/204 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       Q  + S Q        L   Q    +++A    ++     ++E  P 
Sbjct: 262 VTIGDVARVERGAQFYNASGQFNGQPSTVLAIYQAPGANALAVADAVKARLVSLSENFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         ++ +   I  + ++ + ++  ++I    W   +     + + +  T
Sbjct: 322 DVEYGVPFDTTDFVQQSLNDVISTLFLTFLLVVSVVFIFLGNWRATIIPTVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G     G+  N  ++ A++  IG  V+D +VV + +     +    +  ++   K++ +
Sbjct: 382 FGVLLALGMSLNTISLFALVLAIGIVVDDAIVVVENV--ERIIADEGLGPKEATAKAMLQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG 791
             G  V T++      +P     G
Sbjct: 440 ITGPVVATTLVLLAVFVPTIFMPG 463



 Score = 41.6 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 52/533 (9%), Positives = 140/533 (26%), Gaps = 55/533 (10%)

Query: 18   GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF-----VNGFLQM 72
            G +  +            P           L+ +G  +L+++V   D        G  Q 
Sbjct: 544  GAVAMIMTLGSTLPQGFLP-----------LEDQG--YLMVDVQLPDGAALGRTEGVTQQ 590

Query: 73   YSDELRSF--------LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
              D             +    I   +       +  +      ++     +   L    +
Sbjct: 591  VVDLATKTPGVENIVLVNGYSILNGATSSNSALVIATMTGWDERQEPGLDINSILGKFWA 650

Query: 125  KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA----IEQSMEIIRQRIDQIGISEST 180
            + +  P  N++         +  +      +   A     + +  +              
Sbjct: 651  EFSTIPGANIIAFNPPPIPGLGTTGGVQAMLQQTAGGSPQDLASAVGSMVYSANQNPAIA 710

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                     + Q+  + D  + + L    + +                G  ++ D +   
Sbjct: 711  RAYSTFRANVPQVFVDLDREKAKTLQVNVSDVFTTLQA--------YLGSYYINDFNIFG 762

Query: 241  YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + +  ++  G   +      +         +            VT +N+  P  +    
Sbjct: 763  RVYKVMIQAEGQFRDRVDDIGNLYVRSADGTMV------PLRSLVTTENVLGPQILTRYN 816

Query: 301  RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
               +A ++    P     +  N   + A        A                   GS S
Sbjct: 817  MFRSAALMADPAPGASTGVVINAVEQAAVEAMPPGYAYEWTG--------TAQQQQGSGS 868

Query: 361  IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
            I      +      + L          +    S+   ++  L  +++ G  + L +  G+
Sbjct: 869  IVMFILMLSVIFTYLFLVAQYESWTMPVAILMSVTFALLGALVAVAVTGGDVNLYTQIGM 928

Query: 421  VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            ++ IGL   + IL+ E   E+     S+  +        +  +  + ++ L+  V L   
Sbjct: 929  IMLIGLGAKNAILIVEFAIEQRENGMSIKDAAIEAAHLRFRAVMMTALSFLLGVVPLMTA 988

Query: 480  --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
               G  + +     +   +  +    + ++  +   +   ++           
Sbjct: 989  SSAGAASQKAIGFAVFGGMFFATTIGVILIPVLYASLQSMRETVKGWFGSKPP 1041


>gi|83646482|ref|YP_434917.1| cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
 gi|83634525|gb|ABC30492.1| Cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
          Length = 1042

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 72/640 (11%), Positives = 185/640 (28%), Gaps = 43/640 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   G L        +  L  +P+  P   +S+  D  G         
Sbjct: 9   KRPVFASVIGLLLIAFGYL-----CFERLPLREYPAIDPP-VVSVTTDYPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E  S ++            +++IT+ F   R  +   + +   +  
Sbjct: 55  AANVVETRITEVIEERISGVQGIVSISSQSSNGRSRITIEFDIGRDIDAATNDIRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  + +   +      +  I+    +         E +    R  +D++ + +   
Sbjct: 115 IADNLPAEAEPPDIAKEDSSDDVILWLNLSATN--MTVPELTDYANRYLVDRLSVLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    D S +     T   +       N          R  + +   + 
Sbjct: 173 RVRVGGGKVYAMRIWLDRSAMAARRITVTDIEGALRAENVELPAGSIESRDTQFTVRTE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RNFHTPEDFRKLVIGAGQDGYLIRLGDVAKVELGSVEERGIF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     + ++  +           A  +               +     G+ + 
Sbjct: 274 RGNGETMVGVGVTKQSTANVLDVARAVQAQAKRINPTLPEGMTLQASYDSSVFVEGAINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++V++  +   +  LV   ++ +++I T   L     T+ + ++  +V
Sbjct: 334 VVKTLFIAIGLVILVIWAFLRDLRATLVPAVTVPISLIATFCALYAFDFTINMFTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E I       N++   +   G  +    +  + +  +   V + F 
Sbjct: 394 LAIGMVVDDAIVVLENIYRRMHEHNETRLVASFRGSRQIGFAVIATTMVLIAVFVPIAFL 453

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
            G   R    FA+T+  ++  S   A+++  A+    +    K + +         +   
Sbjct: 454 QGDIGRLFSEFALTLAAAVAFSSVIALTLSPALASKILPSDDKAQGLSEGGHFFHKVQHV 513

Query: 537 CIAIQFMRARFWGVGISILFSIC---SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
              I     +   + + ++ +IC   +             + +G   + V          
Sbjct: 514 YGRILAGCLKVRWLFVILMLAICAGSAWLYKDLPEEYAPKEDRGAFFILVNGPEGATYDY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +   +  ++   + F +    +  LVR     G+      
Sbjct: 574 MLDYMNEIERRLMKFVDSGEAQRVLVRAPRGFGNIENFNS 613



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 81/235 (34%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L  V             F+        +   +    + +   R ++   K+I   +P 
Sbjct: 254 IRLGDVAKVELGSVEERGIFRGNGETMVGVGVTKQSTANVLDVARAVQAQAKRINPTLPE 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKT 707
                            I + +  + I+   +++ IW         L    T+ + +  T
Sbjct: 314 GMTLQASYDSSVFVEGAINEVVKTLFIAIGLVILVIWAFLRDLRATLVPAVTVPISLIAT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 F    N+  + A++  IG  V+D +VV + +    +++  + +      +   +
Sbjct: 374 FCALYAFDFTINMFTLLALVLAIGMVVDDAIVVLENI--YRRMHEHNETRLVASFRGSRQ 431

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
                + T+M      +P+A   G +      FA+ +A  +  ++  ++ ++  +
Sbjct: 432 IGFAVIATTMVLIAVFVPIAFLQGDIGRLFSEFALTLAAAVAFSSVIALTLSPAL 486



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + + + +  +F+ +      + T+ L +   +    + G   NL     ++ L+G
Sbjct: 860  LVLGILIVFLVLAAQFESYVHPFVIMLTVPLAVAGGMLGLYITGNSLNLYTQIGLIMLVG 919

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++ +      +L    ++F + + ++    L   + T++      +P+ +   
Sbjct: 920  LAAKNGILIVEF---TNQLRDQGLTFDNALVEASMARLRPILMTAVTTIAGAVPLMLSDG 976

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G        I + +G+  A   ++FI       +         +
Sbjct: 977  PGSETRSVIGIVILWGVSAATLFTVFIVPVAYSLLARKTRSPKAV 1021


>gi|73543123|ref|YP_297643.1| hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134]
 gi|72120536|gb|AAZ62799.1| Hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134]
          Length = 1051

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/690 (10%), Positives = 174/690 (25%), Gaps = 51/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL  +     Q  + ++P+  P               + +    
Sbjct: 8   RPVFAWVLALIIVLGGLLSIV-----QLPIAQYPNIAPPT-------------ISVTATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   L            S       IT++FA     +  + +V  
Sbjct: 50  PGASARTLEDSVTSVIEQELNGAPNLLYYQSTSESSGLASITIAFAPGSNVDLNSVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  +         ++    +     + AI+    +  Q ID I   
Sbjct: 110 RLKRVEARLPAEVRQQGVRVDKAGNNYMMFLTVSSKSGEADAIQLGNYVSSQVIDSIRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L     T   ++      N        G        
Sbjct: 170 PGVGQADLFGT-EYAMRVWLDPAKLTGFNLTPLDVTAAVQEQNIQVAVGELGGTPSPKGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  ++                +    +                 +    A  
Sbjct: 229 ELNATVTTESRLT-------------TPEQFGNILLRTNPDGSSVRIKDVGRVELGGADY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L           V          
Sbjct: 276 STLARTNGKPSAAIAIKLAPTGNALATATAVRAKMEELSKYFPADYQYSVPYDTSAFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+    + + ++ T   L   G ++ + ++
Sbjct: 336 SIEEVIKTLLEAVVLVFLVMYLFLQNFRATLIPTLVVPIALLGTFGALLAFGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    I    +      + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLSPRQATRKAMGQITGAIVGITLVLTAVFIP 455

Query: 477 LFFFGG-------GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + FF G               +M  S L+++    ++   ++  +      +        
Sbjct: 456 MAFFSGSVGNIYRQFSLSLIASMAFSALLALTLTPALCATLLKPVEAGHHHEKTGFFGWF 515

Query: 530 RFFLIPDCIAIQFMRARFWG------VGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    + Q +  R         +  +++     +            + +G +   V
Sbjct: 516 NRTFARASTSYQGVVGRILARSGRYLIIYAVIIVGVVVLFKRLPSSFLPDEDQGYMITVV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L+ ++   +  ++   ++   V      G           +K    
Sbjct: 576 QLPNGATQDRTIGVLKQIEDYYLQKESKVVDQMITVAGFSFFGRGQNGGIAFVRLKDWKE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 T Q            +    I  +
Sbjct: 636 RTGANETAQALVGRAFGALSFIKDAIIFPL 665



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 82/224 (36%), Gaps = 6/224 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V              +        +       G+++A    +    +++++  P 
Sbjct: 260 VRIKDVGRVELGGADYSTLARTNGKPSAAIAIKLAPTGNALATATAVRAKMEELSKYFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +         +  I + I  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 DYQYSVPYDTSAFVKISIEEVIKTLLEAVVLVFLVMYLFLQNFRATLIPTLVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N+  +  ++  IG  V+D +VV + +     +    +S R    K++ +
Sbjct: 380 FGALLAFGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMSEEGLSPRQATRKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
             G  V  ++      +PMA + GSV      F++ +   +  +
Sbjct: 438 ITGAIVGITLVLTAVFIPMAFFSGSVGNIYRQFSLSLIASMAFS 481



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 76/236 (32%), Gaps = 9/236 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L V  +    ++          +G    + ++G     +  Q  PG S  +   +     
Sbjct: 787  LRVRNSNGDMVAFAAFATSKWVMGSPRLERYNGMPAVKIAGQAAPGHSTGEAMRVMEENF 846

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                                   +      + +II  + +     +   W      +  +
Sbjct: 847  AKLPPGFGFEWSGQSYEERLAGSQEPMLYTLSLIIVFLCLA---ALYESWSIPFSVLLVV 903

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L +   L    L G+  ++     ++  IG S  + +++ +  +    L        + 
Sbjct: 904  PLGVLGALLGVTLRGMPNDVYFKVGLIATIGLSAKNAILIVEFAKD---LQAQGKGLIEA 960

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
              ++++      + TSMA  + VLP+A+    G     +    +  G++ A + +I
Sbjct: 961  TLEAVHLRFRPILMTSMAFILGVLPLAIATGAGSGSQRAIGTGVMGGMITATALAI 1016



 Score = 38.9 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 53/503 (10%), Positives = 136/503 (27%), Gaps = 30/503 (5%)

Query: 7    LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
              ++   +  +G+++       +      P       I++     G +            
Sbjct: 539  RYLIIYAVIIVGVVV----LFKRLPSSFLPDEDQGYMITVVQLPNGATQDRTIGVLKQIE 594

Query: 67   NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
            + +LQ  S  +   +   G   F   Q      +   D + +    +     +      L
Sbjct: 595  DYYLQKESKVVDQMITVAGFSFFGRGQNGGIAFVRLKDWKERTGANETAQALVGRAFGAL 654

Query: 127  NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS--ESTIQRL 184
            +      +          +  S     ++   + +   +++  R   +G++     +  +
Sbjct: 655  SFIKDAIIFPLNPPAISELGNSSGFDFRLQDRSGQGHAKLMEARNMMLGMAAKNPVLVGV 714

Query: 185  GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                       + D  R +             V   NS     FG  ++ D      + +
Sbjct: 715  RPEGQEDAAQLQIDIDREKAKALGVT------VATINSTLSIAFGSNYVNDFIYEGRVRK 768

Query: 245  DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
              V+  G                 +  +                     +      R   
Sbjct: 769  VIVQAEGADRRL---------PDDLTKLRVRNSNGDMVAFAAFATSKWVMGSPRLERYNG 819

Query: 305  APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
             P +         Q +   +   A  +     A   P             +  + S    
Sbjct: 820  MPAV-----KIAGQAAPGHSTGEAMRVMEENFAKLPPGFGFEWSG-QSYEERLAGSQEPM 873

Query: 365  TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
               +   +V + L  +             + L V+  L  ++L G    +    G++  I
Sbjct: 874  LYTLSLIIVFLCLAALYESWSIPFSVLLVVPLGVLGALLGVTLRGMPNDVYFKVGLIATI 933

Query: 425  GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FG 481
            GL+  + IL+ E  ++   + + +  +        +  I  +++  ++  + L      G
Sbjct: 934  GLSAKNAILIVEFAKDLQAQGKGLIEATLEAVHLRFRPILMTSMAFILGVLPLAIATGAG 993

Query: 482  GGAVRGFAITMGLSILISMFTAI 504
             G+ R     +   ++ +   AI
Sbjct: 994  SGSQRAIGTGVMGGMITATALAI 1016


>gi|332799137|ref|YP_004460636.1| protein-export membrane protein SecF [Tepidanaerobacter sp. Re1]
 gi|332696872|gb|AEE91329.1| protein-export membrane protein SecF [Tepidanaerobacter sp. Re1]
          Length = 289

 Score =  178 bits (450), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 84/284 (29%), Positives = 150/284 (52%), Gaps = 7/284 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            +    GIS+      +  +  HG N+GIDF GG  L     +  +LS  R+ LE L I 
Sbjct: 9   KKHIWFGISLTIIALGLVFMAMHGFNWGIDFTGGNMLHFDIQQTYELSEARNTLEKLDID 68

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
             + +  D  +  +++             + + +   + +  P + +   E +   I +E
Sbjct: 69  FEAKKAGDKGQELIIKTV------NLSKEMQDEILDALKQKWPDTKLVRAETIDAVIGKE 122

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L ++ ++ +II+ I MLIYI  RF++  AL A+  L+ D+   L F+A+F I  + T +A
Sbjct: 123 LQKQAVIALIIANIGMLIYITFRFEFNSALAAVLALLHDVMIVLSFYAIFYIPVDSTIIA 182

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            +LT++GYS+ND +V++DR+R+N+K     +SF ++ + SI++T+ RSV TS+   +++ 
Sbjct: 183 VILTIVGYSINDTIVIFDRVRENLKNMRK-VSFEEVANLSISQTVTRSVNTSLTTLLTIT 241

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + ++GG  I  F + +  GI     SSIFIA+P+         
Sbjct: 242 ALFLFGGETIKDFTLALIVGIGAGTYSSIFIASPLWSMFRGKLK 285


>gi|167033514|ref|YP_001668745.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           putida GB-1]
 gi|166860002|gb|ABY98409.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida GB-1]
          Length = 1059

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 75/595 (12%), Positives = 162/595 (27%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLVLLIAGSISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   I    D++       
Sbjct: 116 TQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T + +       N        G      S   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    +      
Sbjct: 236 SINTQGRLVNEE-------------EFENIIIRAGADGEITRLKDIARVELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +     +      A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+V
Sbjct: 343 VVHTLFEALVLVVLVVILFLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     S     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKDHHAPKDRFSRFLDKLLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F RA    VG        S   LF +    G+ + G            D
Sbjct: 523 APFNRFFDRASHRYVGGVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQD 577



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 74/218 (33%), Gaps = 10/218 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS---- 676
            +  +   + A        +  I +++              ++ + I  G   +++     
Sbjct: 831  ITAEINGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCV 890

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +A L+       W   L  I  + + +   +    + G + N+     ++ L+G +  +
Sbjct: 891  LLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKN 950

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ +  +         +     + ++    L   + TS+A  + V+P+      G  +
Sbjct: 951  AILIVEFAKDEQA---KGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEM 1007

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +  + +  G++      +F+       I  +  +  
Sbjct: 1008 RHAMGVAVFSGMIGVTVFGLFLTPVFFFLIRRFVERRQ 1045



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 87/236 (36%), Gaps = 17/236 (7%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L +     I      G     +  + +   +  +    E +   I     +    
Sbjct: 279 ALRSLLNNQPAVAIPIFQRPGSNAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRG 338

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E V   +   L+   +V ++               W  ++  +  + + +  T     
Sbjct: 339 SIEAVVHTLFEALVLVVLVVILFLQT-----------WRASIIPLLAVPVSLIGTFAVMH 387

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG   N  ++  ++  IG  V+D +VV + + +N+ L        +   K+++E  G  
Sbjct: 388 LFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIGLGLK---PLEATQKAMSEVTGPI 444

Query: 773 VYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + T++      +    + G  G     FA+ +A   V++A +S+ ++  +   +  
Sbjct: 445 IATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK 500


>gi|220910472|ref|YP_002485783.1| preprotein translocase subunit SecF [Cyanothece sp. PCC 7425]
 gi|219867083|gb|ACL47422.1| protein-export membrane protein SecF [Cyanothece sp. PCC 7425]
          Length = 336

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/254 (29%), Positives = 147/254 (57%), Gaps = 10/254 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +P+D++ VR  +    +G+ S Q       + V ++ Q  D   + R+   + + + 
Sbjct: 64  TCAKPIDITTVREVMSEEGLGNSSIQIL---DQYGVSIRTQALDVDRRARLQNRLSQVLG 120

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
           +  P       +IVGP + ++++  G++ ++IS + + +Y+ +RF+  +A  AI  L  D
Sbjct: 121 KFNP--QSTQIDIVGPTLGQQILVSGLLALLISFVGITLYLTVRFQLDYAFFAIVALFHD 178

Query: 704 ITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +  T+GFF++ G+    E +   + A+LT++G+SVND VV+YDR+R+N+KLY    S  +
Sbjct: 179 VLITVGFFSILGLVAGVEVDSLFIVALLTIVGFSVNDTVVIYDRVRENLKLYPER-SISE 237

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +D ++N+TL RS+ T++   +++L + ++GG  +  FA+ +  G  + A SSIFIA+ +
Sbjct: 238 TVDAAVNQTLTRSLNTTLTVLLTLLSIYLFGGETLKYFALALIIGFTMGAYSSIFIASTL 297

Query: 820 LLFIYDWRAKNARI 833
           L +  +  A+  ++
Sbjct: 298 LAWWRERNAEPLQL 311


>gi|13476126|ref|NP_107696.1| multidrug efflux membrane fusion protein MexF [Mesorhizobium loti
           MAFF303099]
 gi|14026886|dbj|BAB53482.1| multidrug efflux membrane fusion protein; MexF [Mesorhizobium loti
           MAFF303099]
          Length = 1061

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/613 (11%), Positives = 159/613 (25%), Gaps = 44/613 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   +  ++   G +           + +FP   P               +V+    
Sbjct: 11  RPIFASAIAIIMVLAGTI-----CYFLLPVSQFPDITPP-------------QVVVSAHY 52

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +    +  L   +    G+   S     +    IT++F         A  V  
Sbjct: 53  PGASAQVVADTVTTPLEQQINGVQGMTYMSSTSSNDGSSTITITFDVGYSLSTAAVDVQN 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L     +  +    +    +++            +  S     Q +D +   
Sbjct: 113 RVSQAASSLPAIVNQGGVTIKKQNPNFVLIVNLTSPDKSVDPVALSNLAYLQVVDPLKRL 172

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L  L  T   +       N        G        
Sbjct: 173 QGVGDVQIFGERRYSMRIWLDPDKLANLGITAVDVQNAIAEQNVQVAAGKIGQSPAPAGT 232

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  V     +S                   + +  +              I       
Sbjct: 233 AFEMQVNAVGRLS------------DPKEFGDIVVRANTDTGSLVRLRDVARIELGALQY 280

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +     +        L A         +          
Sbjct: 281 SSSAFFGKDPTVVLAVYQMPGSNALDLQQRVKDKMQELSARFPKGVSYAMHYDTTRFVSA 340

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+ V+F+ +   +  ++   +I ++++ TL ++ +LG +L + S+
Sbjct: 341 SMHDVLITLGEALVLVVAVVFIFLQSWRTTIIPTIAIPVSLVATLVVMEMLGFSLNMLSL 400

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IGL VD  I+V E +  +         +     +     I  +    +   V +
Sbjct: 401 LGMVLAIGLVVDDAIVVVENVERQLEAGLKPLAATKAAMAEVTGPIIATTAVLMAVFVPV 460

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPL 528
            F  G + R    FA+T+ +S+ IS F ++++  A+    +R++        +  +    
Sbjct: 461 AFIPGVSGRLYNQFALTVAISVGISAFNSLTLSPALSAAFLRHRHGPQFFLFRWFNTGFD 520

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +              +                   ++ +G   + +     
Sbjct: 521 KISHAYAHGVRFLIRLRWIMLGLFAAGLVATYFVWQKLPSTFLPVEDQGYFFVVIQLPDG 580

Query: 589 VDLSVVRSNLESL 601
             L    +  +  
Sbjct: 581 ASLERTDAVAQKA 593



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 64/182 (35%), Gaps = 9/182 (4%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                   +EL    I  V+     + +++ +      W      +  + L +       +
Sbjct: 858  EWTGITFQELKAGSIASVVFGLAIVFVFLILAAQYESWAMPFMVLLAVPLALFGAFAALS 917

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            + G++ ++ +    + LIG +  + +++ +  R   +     +S  +   ++    L   
Sbjct: 918  VRGMQIDVYSQIGFVMLIGLAAKNAILIVEFAR---RRREEGLSIVEAAMEAARLRLRPI 974

Query: 773  VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + T+ A  + VLP+      G +   S    +  G+V A   S+         I   R +
Sbjct: 975  LMTAFAFILGVLPLMFATGAGAASRQSIGTTVFGGMVAATILSLVFVPVFYAVIEQLRER 1034

Query: 830  NA 831
              
Sbjct: 1035 RG 1036



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +     + + +  TL    + G   N+ ++  ++  IG  V+D +VV + +    
Sbjct: 366 SWRTTIIPTIAIPVSLVATLVVMEMLGFSLNMLSLLGMVLAIGLVVDDAIVVVENV---E 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +     +        ++ E  G  + T+       +P+A   G        FA+ +A  +
Sbjct: 423 RQLEAGLKPLAATKAAMAEVTGPIIATTAVLMAVFVPVAFIPGVSGRLYNQFALTVAISV 482

Query: 806 VVAASSSIFIAAPILLFIYDWR 827
            ++A +S+ ++  +       R
Sbjct: 483 GISAFNSLTLSPALSAAFLRHR 504


>gi|289209081|ref|YP_003461147.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Thioalkalivibrio sp. K90mix]
 gi|288944712|gb|ADC72411.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Thioalkalivibrio sp. K90mix]
          Length = 1044

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 66/527 (12%), Positives = 155/527 (29%), Gaps = 40/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I      +A    L    ++++P  +P   +                + 
Sbjct: 8   RPIFSSVISFVIV-----LAGLAALSALPVEQYPDVVPPQVVVQ-------------ANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
               +  L +  +  L   +           +     + +I +SF      +  A  V  
Sbjct: 50  PGASSEVLAESVAAPLEQEINGVDNMIYMESTSTDAGSLQIAVSFEMGTDPDQAAINVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q    +L  + +   +         +++   +       ++  S   +   +D++   
Sbjct: 110 RVQAALPRLPQEVRDQGVRVEARSTNILMVPVLSSPDGRYDSLFISNYALLNVLDELVRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P +L Q   T + ++      N        G     +  
Sbjct: 170 PGVGDASLFGAQDYSMRVWLRPDKLAQFELTPSDVTAAIREQNAQFAAGRIGAEPAPEGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V    ++                      I                 +       
Sbjct: 230 AFTFTVTTDGQLDNAE-------------AFEDIILRSGSDGSTLRLGDVARVSLGAQNY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +   T          L           V          
Sbjct: 277 EFSATYNGEPTVPLGVFLQPGANALDTAREVRSALDELSERFPDGLEYTVAYDITEFVEI 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   LV++V F+ + + +  L+   +I +++I T A +  +G ++ L ++
Sbjct: 337 SVREVFITLLIAVALVVLVTFLFLQHLRATLIPVAAIPVSLIGTFAGMQAMGFSVNLLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD+ I+V E +      K      +      +    +  S +  +     
Sbjct: 397 FGLVLAIGIVVDNAIIVMENVERLMAEKGLKAREASIETMQQVAGAVVASTLVLVAVFAP 456

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F GG +    R FA+T+ +S+++S   A+++  AM   ++  +K 
Sbjct: 457 VAFLGGLSGELYRQFAVTIAVSVVVSGVVALTLTPAMCALLLDKQKH 503



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 87/240 (36%), Gaps = 6/240 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  + S          L        +++   R +     +++E  P     
Sbjct: 265 DVARVSLGAQNYEFSATYNGEPTVPLGVFLQPGANALDTAREVRSALDELSERFPDGLEY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  +     +R+  + ++I+   +++  ++  +     L  +  + + +  T    
Sbjct: 325 TVAYDITEFVEISVREVFITLLIAVALVVLVTFLFLQHLRATLIPVAAIPVSLIGTFAGM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   NL  +  ++  IG  V++ ++V + +     +    +  R+   +++ +  G 
Sbjct: 385 QAMGFSVNLLTLFGLVLAIGIVVDNAIIVMENV--ERLMAEKGLKAREASIETMQQVAGA 442

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V +++       P+A  G   G +   FA+ +A  +VV+   ++ +   +   + D + 
Sbjct: 443 VVASTLVLVAVFAPVAFLGGLSGELYRQFAVTIAVSVVVSGVVALTLTPAMCALLLDKQK 502



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 69/210 (32%), Gaps = 15/210 (7%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
            +  E ++  + E+   +      I                  +  + + + +  ++ +  
Sbjct: 834  QAKEALEAVVAELDSDANTTMGWIGEAYQLDVAAGAAGAAFGLGLLMVFLILAAQYERLT 893

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L   T +   +        L G   ++     +L LIG +  + +++ +   +N +  
Sbjct: 894  LPLAVATAVPFGVLGAALATMLRGFPNDIYFQVGLLVLIGLAAKNAILIVEFAAQNRRE- 952

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG-IVV 807
               +S  D    +  +     V T+M   I  LP+      G +        +  G I  
Sbjct: 953  --GMSSTDAAMAAARQRFRAIVMTAMTFIIGTLPLMFATGAGAASRQEIGTVVVGGMIAA 1010

Query: 808  AASSSIFIAAPILLFIYD-----WRAKNAR 832
            +  + +F+  P+   + +      + +  +
Sbjct: 1011 STLALLFV--PLFYKLLEDLVTWRQQRREK 1038


>gi|116691992|ref|YP_837525.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia HI2424]
 gi|170736014|ref|YP_001777274.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia MC0-3]
 gi|116649992|gb|ABK10632.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia HI2424]
 gi|169818202|gb|ACA92784.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia MC0-3]
          Length = 1047

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/649 (9%), Positives = 158/649 (24%), Gaps = 50/649 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GL+       PQ  + R+PS  P               + +   
Sbjct: 7   RRPVFAWVIALFIILTGLIAI-----PQLPVARYPSVAPP-------------SVTITAS 48

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +    Q +IT++F      E     V 
Sbjct: 49  YPGATPQTMNDGVLSLIERELSGVKNLLYFESSADTSGQAQITVTFKPGTNPEMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V  +L    ++N L+  +     +++     D         +  + R   +++  
Sbjct: 109 NKIKSVEPRLPAAVRQNGLIVESASSGFLMIVSLRSDNGRFDEGALADYMARSVSEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   + L        +    DP +L     + + ++      N        G       
Sbjct: 169 IDGVGRVLQFGS-ERAMRIWVDPQKLINFGLSMSDLTTAIGQQNVQIAPGSLGALPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                     +        +        +      
Sbjct: 228 QRVTVPLTAQGQLT-------------TPEAFAKVVLRANADGSKVVLGDVARVELGSQN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T +      A L           +         
Sbjct: 275 YTFVSRENNKPATLAGVQLAPGANAVKTADAIRARMAELSKSMPSGMSYSIPLDTSPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 335 ISIEKVLHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAMLGTFTVMLLTGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMAEEGLSPKDATSKAMKEITGAIIGVTLVLTAVFL 454

Query: 476 VLFFFGGGAVRGFAITMGLSILISMF------------TAISIVRAMMIFIIRYKKMKSI 523
            +    G     +        +  +F             A  +         +       
Sbjct: 455 PMAMASGSVGVIYKQFTLSMAVSILFSALLALTLTPALCATMLKPIAAGHHEKRGFFGWF 514

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R     +    +     +            + +G      
Sbjct: 515 NRRFDRLTKWYETRVGRLVGRTGRVMLVFVAISGALVLGFRSLPSSFLPDEDQGYFITSF 574

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           L             +++L+    S        + +       G + A  
Sbjct: 575 LLPADATAERTHDVVKTLEKHLASRPAIQSSISVIGYGFSGQGSNAAIN 623



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 83/230 (36%), Gaps = 14/230 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q      +  +              ++V     +     ++++ +
Sbjct: 258 SKVVLGDVARVELGSQNYTFVSRENNKPATLAGVQLAPGANAVKTADAIRARMAELSKSM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +  +      +  I K +  ++ + + + + +++     R+    A+ A   + 
Sbjct: 318 PSGMSYSIPLDTSPFVKISIEKVLHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAM- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T     L G   N+  +  ++  IG  V+D +VV + +     +    +S +D  
Sbjct: 377 ---LGTFTVMLLTGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAEEGLSPKDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
            K++ E  G  +  ++      LPMA+  GSV      F + MA  I+ +
Sbjct: 432 SKAMKEITGAIIGVTLVLTAVFLPMAMASGSVGVIYKQFTLSMAVSILFS 481



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 64/150 (42%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + +++S I + + +   ++ W   L  +  + L +   +G   L G+  ++     +
Sbjct: 865  QAPMLMVLSMIVVFLVLAALYESWSIPLSVMLVVPLGLIGAIGAVLLRGMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L        +   ++    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAK---QLREEGKGLIEAAVQASKLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             +  G       +    +  G+V A   +I
Sbjct: 982  MIATGASAETQHAIGTGVFGGMVTATVLAI 1011


>gi|294012558|ref|YP_003546018.1| RND-family efflux transporter [Sphingobium japonicum UT26S]
 gi|292675888|dbj|BAI97406.1| RND-family efflux transporter [Sphingobium japonicum UT26S]
          Length = 1034

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/535 (13%), Positives = 159/535 (29%), Gaps = 38/535 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  ++C +G++           +  +P   P                     
Sbjct: 9   RRPVFAAVVAVLLCIVGVV-----GYLSLSIREYPDTDPPIV---------SVETSYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + ++       + R   + + + F  SR  ++ A+ V   + G
Sbjct: 55  AASVVETRITQIIEDGVAGVQGIQNINSTSRDGVSSVNIEFDPSRDIDSAANDVRDRVSG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D     +        +I+      D       + +  + R  +D+    +   
Sbjct: 115 IVEDLPEDALAPEIRKVDADARAILFIVFTRDGWT--PTQIADYLDRNVLDRFSAIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +  G            +  +L     T   +       N       F  +          
Sbjct: 173 RVTGGGDERPSTRIWLNAEKLTAFGITPGDIESALRAQNVELPAGRFESK---------- 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                      +             +    +        +        I +         
Sbjct: 223 ---------DQNQTLRVERAFSTPEQFAQLVVGRGADGYQVKLGDVARIEQGAENPYTSF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A          ++  +     E A  L A LR    P     +          +   
Sbjct: 274 RSNAATGVGVGIIRQSGANTLEVAEKAKALIAELRTTLPPGMKVTIGSDESLFIGRAIDN 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A LV++V+F+ +   +  ++   ++ + ++ T A++ LLG ++ L ++   V
Sbjct: 334 VYDTLGEAALLVVLVIFLFLGSMRATIIPSITVPICLLATCAVMWLLGLSINLLTLLAFV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     + +    +  +G  +    I  + +      V + F  
Sbjct: 394 LAIGLVVDDAIVVLENVYHRIEQGEDPLVASYLGTRQVGFAIISTTLVVCAVFVPVMFLA 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           G      R  AI M  +I  S F ++S+   +   ++R+ +   +      RF  
Sbjct: 454 GQTGLLFRELAIAMIAAIAFSGFISLSLAPMLCSKLLRHSERSRLSRWVDDRFQR 508



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 61/207 (29%), Gaps = 4/207 (1%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V    +  +    SF++       +  ++    +++      + +  ++   +P
Sbjct: 253 QVKLGDVARIEQGAENPYTSFRSNAATGVGVGIIRQSGANTLEVAEKAKALIAELRTTLP 312

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                             I      +   + + +L+           +    T+ + +  
Sbjct: 313 PGMKVTIGSDESLFIGRAIDNVYDTLGEAALLVVLVIFLFLGSMRATIIPSITVPICLLA 372

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T     L G+  NL  + A +  IG  V+D +VV + +                      
Sbjct: 373 TCAVMWLLGLSINLLTLLAFVLAIGLVVDDAIVVLENV---YHRIEQGEDPLVASYLGTR 429

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +     + T++      +P+    G  
Sbjct: 430 QVGFAIISTTLVVCAVFVPVMFLAGQT 456



 Score = 44.7 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 67/167 (40%), Gaps = 11/167 (6%)

Query: 667  RKGIVGVIISAIAMLIYIWIR--FKWYFALGAITTLILDITKTLGFF--ALFGIEFNLTA 722
              G + ++     +++Y+ +   F+ +   G I   +  +    G    AL G   NL +
Sbjct: 849  TGGSIWLVFGLTILIVYLLLAAQFESFVHPGVIIATV-PLAVAGGVLGLALTGGSVNLYS 907

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ L+G +  + +++ +      +L    +     I ++    L   + TS+A  I 
Sbjct: 908  QIGIVMLVGLAAKNGILIVEFAN---QLRDEGLEIGAAIRQAAARRLRPILMTSIATVIG 964

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             LP+ +    G +   S  + +  G+ +A   ++F+   +   +   
Sbjct: 965  ALPLVIRGGAGAAARHSIGVVVVSGVSLATLITLFLIPILYSRVAGR 1011


>gi|119472681|ref|ZP_01614651.1| putative preprotein translocase SecF, auxillary membrane component
           (General Secretory Pathway) [Alteromonadales bacterium
           TW-7]
 gi|119444806|gb|EAW26108.1| putative preprotein translocase SecF, auxillary membrane component
           (General Secretory Pathway) [Alteromonadales bacterium
           TW-7]
          Length = 312

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/282 (28%), Positives = 147/282 (52%), Gaps = 6/282 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R RF G+ +S +  + S+  L   GLN+G+DF GG       ++ V+L  ++S +     
Sbjct: 15  RLRFSGMLLSAILVLLSVFTLSQKGLNFGLDFTGGYLTEFTTSQGVELKELQSFITKNHN 74

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
           G+                Q +   S +     +            + + ++  +G ++  
Sbjct: 75  GEFELTAQGNSH-----FQLREAPSDSTANSNDWQSAITQNADINAEVLSSAYIGSQVGD 129

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL  +G + +  + +A+++Y+ +RF+W  ALG++  L+ D+   LG F+L  IEFNLT +
Sbjct: 130 ELFEQGCLALFSAMVAVMLYLAVRFEWRLALGSVVALVHDLLLVLGLFSLLSIEFNLTVL 189

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDLIDKSINETLGRSVYTSMAAFIS 782
           A++L +IGYS+ND ++V DR+R+ +++ + +  S   +I+ +I  TL R++ TS     +
Sbjct: 190 ASLLAIIGYSLNDSIIVGDRVRELLRVKSNNALSPASIINSAIKSTLTRTLITSGTTLAT 249

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           V  + +  G+ +  FAI +  GIVV   SSI IAA +   + 
Sbjct: 250 VASVWLLAGAPLQGFAIALFTGIVVGTFSSICIAATLPELLG 291


>gi|307317993|ref|ZP_07597430.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti AK83]
 gi|306896395|gb|EFN27144.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti AK83]
          Length = 1061

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 51/503 (10%), Positives = 133/503 (26%), Gaps = 28/503 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +    +  +P  +P   +                  
Sbjct: 10  RPVFAGVLSVIIFVAGLI-----GMTGLPISEYPEVVPPQIV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PAVIAETVATPLEEQINGVEGMLYMQSQATADGLMTLTVTFELGTDPDQAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   +   
Sbjct: 116 AEPRLPEEVRRLGVTTVKSSPDLTLVVHLISPNGQYDINYLRNYGVLNVKDRLARVDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +     + ++      N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRVWIDPEKAAERGLAASDIANAVRGQNVQAAAGVIGASPSVPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                      +                 +    A      
Sbjct: 236 SVNAQGRL-------------KTPEDFADIVVKSGESGEITRLGDVARVEMGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     E    + A L+          +          S   
Sbjct: 283 LLDNKAAVGMGVFQAPGSNAIQISENVHKVMAELKQTMPDGVDYEIVYDTTQFVRASIES 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T A++ + G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVVVVIVFLQTWRASIIPLVAVPVSIVGTFAVMYVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +     +  S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNISQGLSPVQATYRAMQEVSGPIIAIALVLVAVFVPLAFIT 462

Query: 482 GGAVRGFAITMGLSILISMFTAI 504
           G   + +        + ++ +A+
Sbjct: 463 GLTGQFYRQFALTIAISTVISAL 485



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 77/188 (40%), Gaps = 9/188 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S    +V+  +K+ + + V    + +T          +I   +  + +  + +++++   
Sbjct: 306 SENVHKVMAELKQTMPDGVDYEIVYDTTQFVRASIESVIHTLLEAIALVVVVVIVFLQTW 365

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N
Sbjct: 366 RASIIPL---VAVPVSIVGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           +   +  +S      +++ E  G  +  ++      +P+A      G     FA+ +A  
Sbjct: 423 I---SQGLSPVQATYRAMQEVSGPIIAIALVLVAVFVPLAFITGLTGQFYRQFALTIAIS 479

Query: 805 IVVAASSS 812
            V++A +S
Sbjct: 480 TVISALNS 487



 Score = 46.2 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I   L    L G + N+     ++ L+G S  + +++ +  R+   L  +  +     
Sbjct: 915  MGIMAALTGVWLTGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE---LELSGSNAVSAA 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + TSMA  + V+P+      G  +  +  + +  G++   +  IF+   
Sbjct: 972  IEASRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRSAMGVAVFAGMIGVTAFGIFMTPV 1031

Query: 819  ILLFIYDWRAKN 830
              + I     + 
Sbjct: 1032 FYVLIRKLSGEK 1043


>gi|77458982|ref|YP_348488.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas fluorescens Pf0-1]
 gi|77382985|gb|ABA74498.1| RND multidrug efflux transporter MexD [Pseudomonas fluorescens
           Pf0-1]
          Length = 1043

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 79/705 (11%), Positives = 185/705 (26%), Gaps = 65/705 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GLL+      P   + ++P+  P               + +   
Sbjct: 7   KRPNFAWVVALFISLAGLLVI-----PMLPVAQYPNVAPP-------------QIKVTAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +   +  +   L     +  F      N   +I ++F      +     V 
Sbjct: 49  YPGASAKVLVDSVTSVIEESLNGAKNLLYFESTNNSNGIAEIAVTFQPGTDPQLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS--HAIEQSMEIIRQRIDQI 174
             L+   +++        L         +++   N  +               R   +++
Sbjct: 109 NRLKKAEARMPQAVLTQGLEVEQTSAGFLLIYALNYKEGTQHSDTTALGDYAARNINNEL 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   +S      N       FG     
Sbjct: 169 RRVPGVGKLQFFSS-EAAMRVWLDPQKLVGYGLSIDDVSAAIRGQNVQVPAGSFGSTPTS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SQQELTATLAVKGTLDN-------------PEEFSRIVLRANEDGSTVKLGDVARVEIGQ 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L       A        +   T        A L A         V       
Sbjct: 275 ESYNFNSRLNGRPAVAAAIQLSPGANAIQTATAVKQRLAELSAYFPDDVEYSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + ++ TL ++ L+G ++ +
Sbjct: 335 VDVAIEKVIHTLIEAMVLVFLVMFLFLQNIRYTLIPSIVVPVCLLGTLMMMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGLSPVDATVKAMGQVSGAIIGITLVLSAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F  G      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FMPLAFMSGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLKPIPQGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +                   RA    +    + ++     L        ++ +G + +
Sbjct: 515 AFNRGFAKLTDRYSVLNNGLVARAGRMMLVYLGIIAMLGFFYLRLPESFVPVEDQGYMIV 574

Query: 582 GVLANRPVDLS-------------VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            V        +               R  ++S  +      +  G+   L    ++    
Sbjct: 575 DVQLPPGATRTRTEATGEQLERYLATRDGVQSTFLVSGFSFSGMGDNAALAFPVFKDWSE 634

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             + +        + E   ++       V P     L   G   +
Sbjct: 635 RGEDQSAMAEVNALNEQFAVTNDGAVMAVPPPPIDGLGNSGGFAL 679



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  + + +                 +++     ++    +++   P 
Sbjct: 262 VKLGDVARVEIGQESYNFNSRLNGRPAVAAAIQLSPGANAIQTATAVKQRLAELSAYFPD 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 DVEYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNIRYTLIPSIVVPVCLLGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G   N+  +  ++  IG  V+D +VV + +     +    +S  D   K++ +
Sbjct: 382 LMMMYLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPVDATVKAMGQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +P+A   GSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIIGITLVLSAVFMPLAFMSGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 49/128 (38%), Gaps = 16/128 (12%)

Query: 693  ALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+     LI+ I       A+   G+  ++     ++T+IG +  + +++ +  ++    
Sbjct: 892  AIPLTVMLIVPIGAIGAVLAVMVAGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-----------VWGGSVIGSFAI 799
                 S RD   ++        V TSMA  + V+P+A             G  VIG    
Sbjct: 950  -EKGYSLRDAAIEAARLRFRPIVMTSMAFILGVVPLALATGAGAASQRAIGTGVIGGMLS 1008

Query: 800  PMAFGIVV 807
                G++ 
Sbjct: 1009 ATLLGVLF 1016


>gi|307942212|ref|ZP_07657563.1| hydrophobe/amphiphile efflux-1 family protein [Roseibium sp.
           TrichSKD4]
 gi|307774498|gb|EFO33708.1| hydrophobe/amphiphile efflux-1 family protein [Roseibium sp.
           TrichSKD4]
          Length = 1051

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 79/684 (11%), Positives = 177/684 (25%), Gaps = 34/684 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   G+L           +++FP   P                      
Sbjct: 9   RPKFALVISLVISIAGVL-----GYLALPVEQFPDITPPVV---------NVSASYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +   + +        +     N  + ++FA     +     V   +  
Sbjct: 55  AEVLEETVAAPIEAQVNGVDDMIYMSSNSADSGNYSLNVTFAVGTDPDIATVNVQNRVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +     +         +++            +  S        D +   +   
Sbjct: 115 ATSQLPSEVTATGVTVQKASTNMLMVITLFSPNSSYDEVFLSNYASINMKDALARVQGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP RL  L              N        G   + D    QY
Sbjct: 175 KADVMTDFAYAMRIWLDPDRLASLGMAPTDFIAAIRDQNIQVAAGQIGAPPVPDGQQFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  ++ +                   I                 + +         
Sbjct: 235 TIKAKGRLTTVE-------------DFENIILRTGQDGAVVTIGDVARVERDAQFYNASG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              L           +          S + 
Sbjct: 282 QFNGQPSTVLAVYQAPGANAVAVAAAVKERLESLSQSFPDDMEYEIPFDTTVFVEQSLND 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV+ V+F+ +   +  ++   +I +++I T  +L  LG +L   S+  +V
Sbjct: 342 VIETLFVTFILVVTVVFIFLGNWRATIIPTVAIPVSLIGTFGVLLALGMSLNTISLFALV 401

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +     ++    +  + +  L   V   F 
Sbjct: 402 LAIGIVVDDAIVVVENVERLIADEGLSPQEATAKAMTQITGPVIATTLVLLAVFVPTIFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     FA+T+ +S++IS   A+++  A+   I+R +         L+ F      
Sbjct: 462 PGITGRLYSQFAVTISVSVIISSINALTLSPALCGLILRPRSGP--ARGLLAVFEGGIGA 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               +       V +S +  +    ++   G       +G + L       VD+ +    
Sbjct: 520 ARNGYTALIRRLVRVSFMGLVAVAGVIVAIGYFGKELPQGFLPLEDQGYLMVDVQLPDGA 579

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
                 G         +    V               L      +   +     +    +
Sbjct: 580 SLERTEGVTQQVVEIAKNTPGVENVTVVNGFSILNSALSSNSALVIATMTNWQERQDPDL 639

Query: 658 GPKISRELIRKGIVGVIISAIAML 681
           G              +  + I   
Sbjct: 640 GINAILAKFWGQFSTIPGANIISF 663



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/215 (8%), Positives = 71/215 (33%), Gaps = 9/215 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                  +      +E    +            T +        ++   ++ ++ +    L
Sbjct: 827  PAPGASTGVIINAMEAGATEALPSGYAYEWTGTALQQQGTGNLVLFILMLAILFAY---L 883

Query: 682  IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
              +     W   +  + ++ + +        + G + NL     ++ L+G    + +++ 
Sbjct: 884  FLVAQYESWTMPVAILMSVTVAMLGAFVAVFVTGGDVNLYTQIGMIMLVGLGAKNAILIV 943

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFA 798
            +   +      +  S +D   ++ +      + T+++  + V+P+      G +   +  
Sbjct: 944  EFAMEQRA---SGKSIKDAAIEAGHLRFRAVMMTALSFLLGVVPLMTASSAGAASQNAIG 1000

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              +  G++ A    + +   + + +   R K   +
Sbjct: 1001 FAVFGGMLFATVFGVILIPVLFVVMQTMREKVKAM 1035



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 74/204 (36%), Gaps = 3/204 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V       Q  + S Q        L   Q    ++VA    ++   + +++  P 
Sbjct: 262 VTIGDVARVERDAQFYNASGQFNGQPSTVLAVYQAPGANAVAVAAAVKERLESLSQSFPD 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                          + +   I  + ++ I ++  ++I    W   +     + + +  T
Sbjct: 322 DMEYEIPFDTTVFVEQSLNDVIETLFVTFILVVTVVFIFLGNWRATIIPTVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G     G+  N  ++ A++  IG  V+D +VV + +     +    +S ++   K++ +
Sbjct: 382 FGVLLALGMSLNTISLFALVLAIGIVVDDAIVVVENV--ERLIADEGLSPQEATAKAMTQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG 791
             G  + T++      +P     G
Sbjct: 440 ITGPVIATTLVLLAVFVPTIFMPG 463


>gi|254248763|ref|ZP_04942083.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia
           PC184]
 gi|124875264|gb|EAY65254.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia
           PC184]
          Length = 1047

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/649 (9%), Positives = 158/649 (24%), Gaps = 50/649 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GL+       PQ  + R+PS  P               + +   
Sbjct: 7   RRPVFAWVIALFIILTGLIAI-----PQLPVARYPSVAPP-------------SVTITAS 48

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +    Q +IT++F      E     V 
Sbjct: 49  YPGATPQTMNDGVLSLIERELSGVKNLLYFESSADTSGQAQITVTFKPGTHPEMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V  +L    ++N L+  +     +++     D         +  + R   +++  
Sbjct: 109 NKIKSVEPRLPAAVRQNGLIVESASSGFLMIVSLRSDNGRFDEGALADYMARSVSEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   + L        +    DP +L     + + ++      N        G       
Sbjct: 169 IDGVGRVLQFGS-ERAMRIWVDPQKLINFGLSMSDLTTAIGQQNVQIAPGSLGALPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                     +        +        +      
Sbjct: 228 QRVTVPLTAQGQLT-------------TPEAFAKVVLRANADGSKVVLGDVARVELGSQN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T +      A L           +         
Sbjct: 275 YTFVSRENNKPATLAGVQLAPGANAVKTADAIRARMAELSKSMPSGMSYSIPLDTSPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 335 ISIEKVLHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAMLGTFTVMLLTGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMAEEGLSPKDATSKAMKEITGAIIGVTLVLTAVFL 454

Query: 476 VLFFFGGGAVRGFAITMGLSILISMF------------TAISIVRAMMIFIIRYKKMKSI 523
            +    G     +        +  +F             A  +         +       
Sbjct: 455 PMAMASGSVGVIYKQFTLSMAVSILFSALLALTLTPALCATMLKPLAPGHHEKRGFFGWF 514

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R     +    +     +            + +G      
Sbjct: 515 NRRFDRMTKWYETRVGRLVGRTGRVMLVFVAISGALVLGFRSLPSSFLPDEDQGYFITSF 574

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           L             +++L+    S        + +       G + A  
Sbjct: 575 LLPADATAERTHDVVKTLEKHLASRPAIQSSISVIGYGFSGQGSNAAIN 623



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 83/230 (36%), Gaps = 14/230 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q      +  +              ++V     +     ++++ +
Sbjct: 258 SKVVLGDVARVELGSQNYTFVSRENNKPATLAGVQLAPGANAVKTADAIRARMAELSKSM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +  +      +  I K +  ++ + + + + +++     R+    A+ A   + 
Sbjct: 318 PSGMSYSIPLDTSPFVKISIEKVLHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAM- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T     L G   N+  +  ++  IG  V+D +VV + +     +    +S +D  
Sbjct: 377 ---LGTFTVMLLTGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAEEGLSPKDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
            K++ E  G  +  ++      LPMA+  GSV      F + MA  I+ +
Sbjct: 432 SKAMKEITGAIIGVTLVLTAVFLPMAMASGSVGVIYKQFTLSMAVSILFS 481



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 64/150 (42%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + +++S I + + +   ++ W   L  +  + L +   +G   L G+  ++     +
Sbjct: 865  QAPMLMVLSMIVVFLVLAALYESWSIPLSVMLVVPLGLIGAIGAVLLRGMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L        +   ++    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAK---QLREEGKGLIEAAVQASKLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             +  G       +    +  G+V A   +I
Sbjct: 982  MIATGASAETQHAIGTGVFGGMVTATVLAI 1011


>gi|46581650|ref|YP_012458.1| AcrB/AcrD/AcrF family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46451073|gb|AAS97718.1| AcrB/AcrD/AcrF family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235291|gb|ADP88145.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio vulgaris RCH1]
          Length = 1047

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 67/621 (10%), Positives = 161/621 (25%), Gaps = 34/621 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  IG++  +        + ++P   P                +     
Sbjct: 9   RPILANVIGIVLILIGVVSVM-----LLPISQYPEITPPTVE---------VKAIYPGSN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +     V   +  
Sbjct: 55  SLVLADTVGAPIEQEVNGVEGMLYMSSKSANDGTYTLTITFALGTNIDMATVLVQNRVNV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + K+  +    +    + +            +  S     +  D++       
Sbjct: 115 AMARLPDEVKRQGVTVKKKSTAILQVVTLTSPDGSYDDLFLSNFASLRIRDELARIPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D  RL+ +  TT  +       N        G +   D+   Q+
Sbjct: 175 EATVFGAASYSMRVWLDAPRLKSMGLTTKDVVNAISEQNVQVAAGQIGAQPAPDTQNFQF 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ +  +S +           +    ++  +      R         +           
Sbjct: 235 TVQTQGRLSNVE----------EFEDIIIRTATSGPAGRVVRVRDVARVELGGQTYDLYA 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I       +     +        L           V          +   
Sbjct: 285 QKNGKPAALVIIYQLPGANALDVAQQVNARMKTLGNDFPQGVAWDVPYDTTRFVEAAIEQ 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A LVL V+ + +   +  LV    + + ++     +  LG ++ L ++ GI+
Sbjct: 345 VYHTLFEAAVLVLAVILIFLQDWRATLVPASVVPITILGGFMAMMGLGFSVNLVTLFGII 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI---TALIATVVLF 478
           L IG+ VD  I+V E              +      + +  I    +      I    + 
Sbjct: 405 LAIGIVVDDAIIVVEGAAHHMEHGDPAREATIKAMMQLFGPIIGITLVLSCVFIPASFMS 464

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFF 532
              G   R FA+ +  + L+S   A ++  A            R    +  + +  +   
Sbjct: 465 GITGQLYRQFALVIASTALVSALLAATLTPAQCALFLKPIVPGRNAFYRGFNKSYDAVEN 524

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L    +      A+   +    L +                + +G   + V        +
Sbjct: 525 LFVTILRTMVRHAKTTMLVFVGLITATFWAFTSLPTGFLPDEDQGYALVAVQLPGAASQA 584

Query: 593 VVRSNLESLQIGDISFQNFDG 613
             R     L       Q    
Sbjct: 585 RTREVTTRLDAIFSETQGVAD 605



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/431 (10%), Positives = 135/431 (31%), Gaps = 21/431 (4%)

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            A+ S         +  G+ +  G    ++  V    ++ + +       +     R  ++
Sbjct: 595  AIFSETQGVADWITFGGMSILNGANTSNSATVFVMYKDWSERGALTQERIVADLRRKVAS 654

Query: 463  IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            I +     +I        G G   GF + +     +      ++  +MM        + +
Sbjct: 655  IQE---GMVIVVTPPPIQGLGNAGGFEMMVQDRAALGAQQLETVAYSMMAAARGQSGLGN 711

Query: 523  IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-----YGIDFKG 577
            +     +R   +   +    ++     +          +   + +  N     Y +  + 
Sbjct: 712  VSTTYNARTPQLFVNVDRTQVKNYDVQLNDVFSTMQSYLGSSYVNDFNKFGKTYQVRVQA 771

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR---- 633
              +  + A     L V  +    + +G ++        + + R    P  S+        
Sbjct: 772  DSRYRLTAEDIGRLEVRNAQGGMVPLGAVTDVKDVVGPDVVTRYNLYPAASLIGAAAPGF 831

Query: 634  ---VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
                   + + +       ++           +    +       + + + + +  +++ 
Sbjct: 832  SSGQALALMEDMARKTLPQSMGFEWTTMAYQEKATGNEAFAVFGFAVLLVFLVLAAQYES 891

Query: 691  YFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            + A  AI  ++ L +  T    A  G++ N+     ++ LI  +  + +++ +  R+   
Sbjct: 892  WSAPAAIIMVVPLALLGTSIAVATRGMDNNVYTQIGIVLLIALASKNAILIVEFARE--L 949

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 +S +D   +         + TS A  + V+P+      G +   +    +  G++
Sbjct: 950  RLQKGMSIQDAAVEGARARFRPILMTSFAFILGVVPLLTASGAGSASQRALGTAVFGGML 1009

Query: 807  VAASSSIFIAA 817
             +   ++    
Sbjct: 1010 ASTFLAVLFVP 1020



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 69/195 (35%), Gaps = 13/195 (6%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 ++ +     + V      +T         ++        ++    +LI++    
Sbjct: 309 QQVNARMKTLGNDFPQGVAWDVPYDTTRFVEAAIEQVYHTLFEAAVLVLAVILIFLQ--- 365

Query: 689 KWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            W   L      ++ IT   GF A+   G   NL  +  ++  IG  V+D ++V +    
Sbjct: 366 DWRATLVP--ASVVPITILGGFMAMMGLGFSVNLVTLFGIILAIGIVVDDAIIVVE---G 420

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSV-YTSMAAFISVLPMAVWG--GSVIGSFAIPMAF 803
                      R+   K++ +  G  +  T + + + +    + G  G +   FA+ +A 
Sbjct: 421 AAHHMEHGDPAREATIKAMMQLFGPIIGITLVLSCVFIPASFMSGITGQLYRQFALVIAS 480

Query: 804 GIVVAASSSIFIAAP 818
             +V+A  +  +   
Sbjct: 481 TALVSALLAATLTPA 495


>gi|120601192|ref|YP_965592.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Desulfovibrio
           vulgaris DP4]
 gi|120561421|gb|ABM27165.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio vulgaris DP4]
          Length = 1047

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 67/621 (10%), Positives = 161/621 (25%), Gaps = 34/621 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  IG++  +        + ++P   P                +     
Sbjct: 9   RPILANVIGIVLILIGVVSVM-----LLPISQYPEITPPTVE---------VKAIYPGSN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +     V   +  
Sbjct: 55  SLVLADTVGAPIEQEVNGVEGMLYMSSKSANDGTYTLTITFALGTNIDMATVLVQNRVNV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + K+  +    +    + +            +  S     +  D++       
Sbjct: 115 AMARLPDEVKRQGVTVKKKSTAILQVVTLTSPDGSYDDLFLSNFASLRIRDELARIPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D  RL+ +  TT  +       N        G +   D+   Q+
Sbjct: 175 EATVFGAASYSMRVWLDAPRLKSMGLTTKDVVNAISEQNVQVAAGQIGAQPAPDTQNFQF 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ +  +S +           +    ++  +      R         +           
Sbjct: 235 TVQTQGRLSNVE----------EFEDIIIRTATSGPAGRVVRVRDVARVELGGQTYDLYA 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I       +     +        L           V          +   
Sbjct: 285 QKNGKPAALVIIYQLPGANALDVAQQVNARMKTLGNDFPQGVAWDVPYDTTRFVEAAIEQ 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A LVL V+ + +   +  LV    + + ++     +  LG ++ L ++ GI+
Sbjct: 345 VYHTLFEAAVLVLAVILIFLQDWRATLVPASVVPITILGGFMAMMGLGFSVNLVTLFGII 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI---TALIATVVLF 478
           L IG+ VD  I+V E              +      + +  I    +      I    + 
Sbjct: 405 LAIGIVVDDAIIVVEGAAHHMEHGDPAREATIKAMMQLFGPIIGITLVLSCVFIPASFMS 464

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFF 532
              G   R FA+ +  + L+S   A ++  A            R    +  + +  +   
Sbjct: 465 GITGQLYRQFALVIASTALVSALLAATLTPAQCALFLKPIVPGRNAFYRGFNKSYDAVEN 524

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L    +      A+   +    L +                + +G   + V        +
Sbjct: 525 LFVTILRTMVRHAKTTMLVFVGLITATFWAFTSLPTGFLPDEDQGYALVAVQLPGAASQA 584

Query: 593 VVRSNLESLQIGDISFQNFDG 613
             R     L       Q    
Sbjct: 585 RTREVTTRLDAIFSETQGVAD 605



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/431 (10%), Positives = 135/431 (31%), Gaps = 21/431 (4%)

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            A+ S         +  G+ +  G    ++  V    ++ + +       +     R  ++
Sbjct: 595  AIFSETQGVADWITFGGMSILNGANTSNSATVFVMYKDWSERGALTQERIVADLRRKVAS 654

Query: 463  IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            I +     +I        G G   GF + +     +      ++  +MM        + +
Sbjct: 655  IQE---GMVIVVTPPPIQGLGNAGGFEMMVQDRAALGAQQLETVAYSMMAAARGQSGLGN 711

Query: 523  IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-----YGIDFKG 577
            +     +R   +   +    ++     +          +   + +  N     Y +  + 
Sbjct: 712  VSTTYNARTPQLFVNVDRTQVKNYDVQLNDVFSTMQSYLGSSYVNDFNKFGKTYQVRVQA 771

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR---- 633
              +  + A     L V  +    + +G ++        + + R    P  S+        
Sbjct: 772  DSRYRLTAEDIGRLEVRNAQGGMVPLGAVTDVKDVVGPDVVTRYNLYPAASLIGAAAPGF 831

Query: 634  ---VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
                   + + +       ++           +    +       + + + + +  +++ 
Sbjct: 832  SSGQALALMEDMARKTLPQSMGFEWTTMAYQEKATGNEAFAVFGFAVLLVFLVLAAQYES 891

Query: 691  YFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            + A  AI  ++ L +  T    A  G++ N+     ++ LI  +  + +++ +  R+   
Sbjct: 892  WSAPAAIIMVVPLALLGTSIAVAARGMDNNVYTQIGIVLLIALASKNAILIVEFARE--L 949

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 +S +D   +         + TS A  + V+P+      G +   +    +  G++
Sbjct: 950  RLQKGMSIQDAAVEGARARFRPILMTSFAFILGVVPLLTASGAGSASQRALGTAVFGGML 1009

Query: 807  VAASSSIFIAA 817
             +   ++    
Sbjct: 1010 ASTFLAVLFVP 1020



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 69/195 (35%), Gaps = 13/195 (6%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 ++ +     + V      +T         ++        ++    +LI++    
Sbjct: 309 QQVNARMKTLGNDFPQGVAWDVPYDTTRFVEAAIEQVYHTLFEAAVLVLAVILIFLQ--- 365

Query: 689 KWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            W   L      ++ IT   GF A+   G   NL  +  ++  IG  V+D ++V +    
Sbjct: 366 DWRATLVP--ASVVPITILGGFMAMMGLGFSVNLVTLFGIILAIGIVVDDAIIVVE---G 420

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSV-YTSMAAFISVLPMAVWG--GSVIGSFAIPMAF 803
                      R+   K++ +  G  +  T + + + +    + G  G +   FA+ +A 
Sbjct: 421 AAHHMEHGDPAREATIKAMMQLFGPIIGITLVLSCVFIPASFMSGITGQLYRQFALVIAS 480

Query: 804 GIVVAASSSIFIAAP 818
             +V+A  +  +   
Sbjct: 481 TALVSALLAATLTPA 495


>gi|254235101|ref|ZP_04928424.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter [Pseudomonas aeruginosa C3719]
 gi|313111168|ref|ZP_07796991.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter [Pseudomonas aeruginosa 39016]
 gi|126167032|gb|EAZ52543.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter [Pseudomonas aeruginosa C3719]
 gi|310883493|gb|EFQ42087.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter [Pseudomonas aeruginosa 39016]
          Length = 1045

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 77/684 (11%), Positives = 189/684 (27%), Gaps = 43/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPVFAWVISLLIVLAGVLAI-----RFLPVAQYPDIAPPVV---------NVSASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +    Q  +TL+F      +  A +V   L+ V
Sbjct: 54  AKVVEEAVTAIIEREMNGAPGLLYTKATSSTGQASLTLTFRQGVNADLAAVEVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +++ +      +   ++           A+E         +  +   E   +
Sbjct: 114 ESRLPESVRRDGIYVEKAADSIQLIVTLTSSSGRYDAMELGEIASSNVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP++L  +  + + +       N        G   + DS      
Sbjct: 174 VETWGA-EYAMRIWPDPAKLTSMNLSASDLVNAVRRHNARLTVGDIGNLGVPDSAPISAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+    +                 +                      +    +       
Sbjct: 233 VKVDDTL-------------VTPEQFGEIPLRIRADGGAIRLRDVARVEFGQSEYGFVSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L           +          S    
Sbjct: 280 VNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSYNIPYDTSAFVEISIRKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+++ +   +  L+    + + ++ T  ++  LG ++ + ++ G+VL
Sbjct: 340 VSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  S   +      +    I    +  +   V + FF 
Sbjct: 400 AIGILVDDAIIVVENVERLMAEEGLSPHDATVKAMRQISGAIVGITVVLVSVFVPMAFFS 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+T+ +SI  S F A+S+  A+   +          +       +   L 
Sbjct: 460 GAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLRPIDADHHEKRGFFGWFNRAFLR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                 + +A    R   W +  +++  + ++  +         + +G   + V+     
Sbjct: 520 LTGRYRNAVAGILARPIRWMLVYALVIGVVALLFVRLPQAFLPEEDQGDFMIMVMQPEGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            ++   +N+  ++      +       + V      GD  +   +   +K          
Sbjct: 580 PMAETMANVGDVERYLAEHEPVA--YAYAVGGFSLYGDGTSSAMIFATLKDWSERREASQ 637

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            +        +    L  + +  +
Sbjct: 638 HVGAIVERINQRFAGLPNRTVYAM 661



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 82/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +        L        ++VA  + +     +++   P     
Sbjct: 263 DVARVEFGQSEYGFVSRVNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSY 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N            IRK +  ++ + + +   +++  + +   L     + + +  T    
Sbjct: 323 NIPYDTSAFVEISIRKVVSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVM 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  +  ++  IG  V+D ++V + +     +    +S  D   K++ +  G 
Sbjct: 383 LGLGFSINVLTMFGMVLAIGILVDDAIIVVENV--ERLMAEEGLSPHDATVKAMRQISGA 440

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  ++      +PMA + G+V      FA+ +A  I  +A  ++ +   +   +  
Sbjct: 441 IVGITVVLVSVFVPMAFFSGAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLR 497



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 89/263 (33%), Gaps = 11/263 (4%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            GID  G + +       V L+       +L    ++  N     N   +         A 
Sbjct: 776  GIDDIGRLHVRNEQGEMVPLATFAKAAWTLGPPQLTRYNGYPSFNLEGQAAPGYSSGEAM 835

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              + ++++     I    + Q+ E              +  + +  I  L    +   W 
Sbjct: 836  QAMEQLMQGLPEGIAHEWSGQSFEERLSGAQAP----ALFALSV-LIVFLALAALYESWS 890

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I  + L +   L   +L G+  ++     ++T+IG S  + +++ +  +     Y
Sbjct: 891  IPLAVILVVPLGVLGALLGVSLRGLPNDIYFKVGLITIIGLSAKNAILIIEVAKD---HY 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S      ++    L   V TS+A    V+P+A+    G     +    +  GIV A
Sbjct: 948  QEGMSLLQATLEAARLRLRPIVMTSLAFGFGVVPLALSSGAGSGAQVAIGTGVLGGIVTA 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F+     L +        
Sbjct: 1008 TVLAVFLVPLFFLVVGRLFRLRK 1030


>gi|253995380|ref|YP_003047444.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylotenera mobilis JLW8]
 gi|253982059|gb|ACT46917.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylotenera mobilis JLW8]
          Length = 1034

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/621 (10%), Positives = 183/621 (29%), Gaps = 38/621 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L        Q  + ++P   P                      
Sbjct: 8   RPIFAWVIAILIVLAGVLAI-----KQLPIAQYPDIAPPVV---------NIAASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +        +       I+++F      +  A  V   L+ +
Sbjct: 54  AKVVEETVTSIIEREMNGIPGLMYVSATSNFGLASISVTFRQGTNPDLAAVDVQNRLKSI 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    +++ +      +   ++     +      I+         I  +   +   +
Sbjct: 114 EVRLPEIVRRSGINVEKSADSFQLIVSLTSEDNRYSEIDLGELASSTVIPTLKRVQGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  + +++S      N        G   + ++      
Sbjct: 174 VQSF-SPEYAMRIWPDPQKMAGLNVSVSEISNVLRSYNTRLTLGQVGANGVPEASPLSVS 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E +  +                          +             +    +       
Sbjct: 233 LEAEATL-------------KTVEDFANVPLRTQADGSALLIKDVARVELGSSDYTFSSK 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T+       A ++A   P  +  +   +      S    
Sbjct: 280 VNGKNAAGMAIKLSPGSNAVETVARVKESMAKMQAYFPPNVMYQLSYDSSAFVSISIKKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+++ +   +  L+    + + ++ T A++  LG ++ + ++ G+VL
Sbjct: 340 IQTLVEAVILVFLVMYLFMQNLRATLIPTIVVPIALMGTFAVMYWLGYSINVLTMFGVVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  S + +     S+    +    +  +   + + FF 
Sbjct: 400 AIGILVDDAIVVVENVERLIVEEGLSAYDATVKAMSQISGAVVGITVVLVSVFIPMAFFS 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSRFF 532
              G   R F++++ +SI  S F A+S+  A+   ++R+      +     + +      
Sbjct: 460 GAVGNIYRQFSLSLSVSIAFSAFLALSLTPALCSTLLRHEPQVKARFFIWFNRSFKRMTE 519

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      +   W V  +++ ++         G     + +G   + V   +   L+
Sbjct: 520 RYTRLTGGLLNKPLRWLVVFALIVTLVGWLFARLPGAFLPEEDQGNFMVMVSLPQSATLA 579

Query: 593 VVRSNLESLQIGDISFQNFDG 613
                L  +       +  + 
Sbjct: 580 ETAEVLGDISSYIQKNEPIEN 600



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 85/245 (34%), Gaps = 6/245 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  V            S +        +        ++V     ++    K+    P + 
Sbjct: 261 IKDVARVELGSSDYTFSSKVNGKNAAGMAIKLSPGSNAVETVARVKESMAKMQAYFPPNV 320

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
           +              I+K I  ++ + I + + +++  +     L     + + +  T  
Sbjct: 321 MYQLSYDSSAFVSISIKKVIQTLVEAVILVFLVMYLFMQNLRATLIPTIVVPIALMGTFA 380

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                G   N+  +  V+  IG  V+D +VV + +     +    +S  D   K++++  
Sbjct: 381 VMYWLGYSINVLTMFGVVLAIGILVDDAIVVVENV--ERLIVEEGLSAYDATVKAMSQIS 438

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V  ++      +PMA + G+V      F++ ++  I  +A  ++ +   +   +   
Sbjct: 439 GAVVGITVVLVSVFIPMAFFSGAVGNIYRQFSLSLSVSIAFSAFLALSLTPALCSTLLRH 498

Query: 827 RAKNA 831
             +  
Sbjct: 499 EPQVK 503



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 9/165 (5%)

Query: 672  GVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             ++     M++++    +   W      I  + L +   L    +  +  ++     ++ 
Sbjct: 865  ALLFGLSIMVVFLVLAALYESWAIPFAVILVVPLGVLGALLGVTVRELPNDIYFKVGLIA 924

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-A 787
             IG S  + +++ +  R+++      +   +    +  E L   V TS+A  + V+P+  
Sbjct: 925  TIGLSAKNAILIVEFAREHVLQ---GMPLLEASLLAAKERLRPIVMTSLAFGVGVMPLAF 981

Query: 788  VWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAKN 830
              G +     AI  +   GI+ A   +IF      + +  W  K 
Sbjct: 982  ATGAASGAQIAIGTSVLGGIIAATLLAIFFVPLFFIVVGRWMHKP 1026


>gi|126174762|ref|YP_001050911.1| acriflavin resistance protein [Shewanella baltica OS155]
 gi|125997967|gb|ABN62042.1| acriflavin resistance protein [Shewanella baltica OS155]
          Length = 1031

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 72/629 (11%), Positives = 175/629 (27%), Gaps = 43/629 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+        +  L  +P+                        
Sbjct: 9   KRPVFASVISLLLVAFGLVS-----FDKLPLREYPNIDTPVV---------SIDTNYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       S    ++ +TL F  SR  E+ A+ V   + G
Sbjct: 55  SAAVVESRITQLIEDRISGVEGIRHVSSSSSDGRSSVTLEFDISRNIEDAANDVRDRISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +      +  I+      D      +E +    R   D+  + +   
Sbjct: 115 LLDNLPEEADPPEVQKANGGDEVIMWLNLVSD--QMTTLELTDYTNRYLADRFSVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    D   L     T A +       N          +    +   + 
Sbjct: 173 RMRIGGGKVYAMRIWLDRQALASRSLTVADVEAALRAENVELPAGSIESKERHFTVRLE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +           
Sbjct: 232 ------------------RGYRTAEDFANLVITQGEDGYLVKLGDVARVEIGSEEERIMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +          L   +               +      S   
Sbjct: 274 RGNKEAMIGLGVSKQSTANTLEVARAVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T+ L ++  ++
Sbjct: 334 VYQTLFTAMVLVIIVIYLFLGSVRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     +  S   +  +G       +  + +  +   + + F  
Sbjct: 394 LAIGMVVDDAIVMLENIHRRIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLE 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G      + FA+TM  ++L S   A+++   M   +          ++ +D         
Sbjct: 454 GDLGKLFKEFAVTMSAAVLFSSIVALTLTPMMCSKLLKPSSQDSWLVRKVDGIMTKVSNR 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           V + I     +  +          + +G + L V   +      
Sbjct: 514 YQLSLKSAMAHPLLMSVLVLIALGSSAYLVQKVPQEFAPQEDRGSLFLMVNGPQGASYEY 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           + S +  ++   +   +    K  L+R  
Sbjct: 574 IESYMNEVENRLMPLVDTGDIKRLLIRAP 602



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 70/191 (36%), Gaps = 9/191 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A   +++ +   +   + +    ++ +      +E+ +     +++  I + +++     
Sbjct: 299 AVNALVDKINPTLPAGMSIKRSYDSSVFIEASIKEVYQTLFTAMVLVIIVIYLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  T       G   NL  + A++  IG  V+D +V+ + +    +
Sbjct: 356 VRAMLIPAITVPVSLLGTFIVLYALGYTINLLTLLAMILAIGMVVDDAIVMLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S          E     + T++      +P+    G    +   FA+ M+  ++
Sbjct: 413 RIEEGDSPLKAAFLGAREVAFAVIATTLVLVAVFMPITFLEGDLGKLFKEFAVTMSAAVL 472

Query: 807 VAASSSIFIAA 817
            ++  ++ +  
Sbjct: 473 FSSIVALTLTP 483



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 60/156 (38%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + +  +F+ +   +  + T+ L     L    L G   N+ +   ++ L+G 
Sbjct: 860  LLALGIVFLVLAAQFESYIHPMVIMLTVPLATVGALIGLWLTGQSLNIYSQIGIIMLVGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +      +L    + F   I ++  + L   + T +      +P+ +    
Sbjct: 920  AAKNGILIVEFAN---QLRDKGVDFDKAIIQASAQRLRPILMTGITTAAGAVPLVMAAGA 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +  GI++A   +IF+          
Sbjct: 977  GAETRFVIGVVVLSGILLATLFTIFVIPAAYGLFAR 1012


>gi|242280750|ref|YP_002992879.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio salexigens DSM 2638]
 gi|242123644|gb|ACS81340.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio salexigens DSM 2638]
          Length = 1045

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/675 (10%), Positives = 171/675 (25%), Gaps = 49/675 (7%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +GLL           + ++P   P               + +           ++   
Sbjct: 20  TLVGLLSIF-----TLPIAQYPEIAPPT-------------VQIAAQYTGASADVVEQTV 61

Query: 75  D-ELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
              +   +   + +   +     +    + ++F   R  E     V   +     +L  +
Sbjct: 62  AAPIEEQVNGAQDMLYMNSISSNDGRMVLNVTFDLGRDLELATVDVQNRVSLATPQLPSE 121

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
             K+ +    +    I +      +    ++  +        D I               
Sbjct: 122 VTKSGVSVKKQSSSMICVISLLSPEGTYDSLFLNNYAKINLFDAISRIPGVGSVSLFGDQ 181

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +    DP ++ +L  T   +       N        G          Q  V  K  +
Sbjct: 182 DYGMRIWLDPDKMARLAITADDIIAAVQEQNLQAPAGQVGQPPAASGQQFQLTVRVKGRL 241

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           S             +  +    I                 +                   
Sbjct: 242 S-------------EPDEFGNIIVKANPDGSTVHIRDVARVEMGSKSYSAFGRQGEIDSA 288

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +       +    +E        L           +          S      T    
Sbjct: 289 MLLVYQLPGANALDIVEQVRSTMDELSKDFPTGMKYDIPYDTTLFVTASIDEVMDTLYEA 348

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV IV+F+ +   +  +V   ++ ++++ T A   +LG ++   ++ G+VL IG+ VD
Sbjct: 349 MALVFIVVFIFLQNLRATIVPMIAVPVSLVGTFAFFQVLGFSINTLTLFGMVLAIGIVVD 408

Query: 430 SNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---V 485
             I+V E ++ + + +      +           I  +    +   V + F GG +    
Sbjct: 409 DAIVVVEAVQSKIDEEGMDAKTATKEAMKEVSGPIVATTAVLIAVFVPVAFMGGISGQLY 468

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
           + FA+T+ +S+ IS   A++   AM   +   + K    +               +    
Sbjct: 469 KQFALTLAVSVAISSINALTFSPAMSALLLRPQKKMRGPLGWFFEQFNKYFSKITSGYTS 528

Query: 544 RARFWGV-------GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
             R              +L                  + +G   + V       L    +
Sbjct: 529 GVRLILRKSIVALGIFGVLMFGTYSLFNTVPTGFVPNEDQGYFMINVQLPEGASLERSDA 588

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++ ++    +                    S   + +   +        P   + +   
Sbjct: 589 VVKKVEDILRNEPGVKTYFALGGFNLITGAYSSYTSTLFASLDPWDERTDPQLHVNSILR 648

Query: 657 VGPKISRELIRKGIV 671
              +    +    ++
Sbjct: 649 KVQQKVLGIQEAVVI 663



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 78/204 (38%), Gaps = 8/204 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 ++ + K     +      +T +       E++      + +  I + I++    
Sbjct: 305 EQVRSTMDELSKDFPTGMKYDIPYDTTLFVTASIDEVMDTLYEAMALVFIVVFIFLQ--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +  +  + + +  T  FF + G   N   +  ++  IG  V+D +VV + +    
Sbjct: 362 NLRATIVPMIAVPVSLVGTFAFFQVLGFSINTLTLFGMVLAIGIVVDDAIVVVEAV--QS 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           K+    +  +    +++ E  G  V T+       +P+A  G   G +   FA+ +A  +
Sbjct: 420 KIDEEGMDAKTATKEAMKEVSGPIVATTAVLIAVFVPVAFMGGISGQLYKQFALTLAVSV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829
            +++ +++  +  +   +   + K
Sbjct: 480 AISSINALTFSPAMSALLLRPQKK 503



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 66/169 (39%), Gaps = 9/169 (5%)

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G V +I +   M++++ +      W   L  +  + L +   +    + G++ N+ A   
Sbjct: 870  GEVVIIFALAVMMVFLVLAAQYESWIIPLAIVFAVPLGVFGAISGQFIRGLDNNVYAQIG 929

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G +  + +++ +  +     Y    S  D   ++        + TS A  + V+P
Sbjct: 930  LIMLVGLAAKNAILIVEFAK---AKYEQGASLLDAAVQAAQLRFRPILMTSFAFILGVVP 986

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +    G +   +    +  G++ A    +       + +  ++ +  
Sbjct: 987  LVIAQGAGSASRHALGTSVFAGMIAATILGVLFVPLFYVTLVKFQNRKG 1035


>gi|222087719|ref|YP_002546256.1| multidrug-efflux system [Agrobacterium radiobacter K84]
 gi|221725167|gb|ACM28323.1| multidrug-efflux system [Agrobacterium radiobacter K84]
          Length = 1059

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 69/571 (12%), Positives = 158/571 (27%), Gaps = 39/571 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  +G +        Q  + ++P   P               +V+    
Sbjct: 10  RPIFASVLSIVLLIVGGIA-----YFQLPVAQYPEVAPPT-------------IVIRTSY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
               +  +    +  +   +        +  +S       +T++F      +     V  
Sbjct: 52  PGADSQTIADTVATPIEQEVNGVEDMLYMSSYSSADGSMSLTITFKLGTDLDKAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  + T       +++            +  S     +  D +   
Sbjct: 112 RVAIAEPRLPEEVRRIGITTVKSSPDLMMVVHLLSPSNRYDQLYISNYARSRIRDLLVRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              L    DP +L     T   +       N    G   G   +  ++
Sbjct: 172 DGVGDVQLFGERQYSLRIWLDPEKLASYGMTAGDIVQALRDQNVQVSGGSIGGPPVSGTN 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY V  +   S                     I       R         I       
Sbjct: 232 AFQYTVTTQGRFSDARQFRY-------------VIVKATDSGRLVQLQDVARIELGAQDY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +              L           +          
Sbjct: 279 VTNSYLNGSPAVALGVFARPGTNALDAAADIEKTMKNLAQDFPQGLEYRIIYNPTEFIAE 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T    A LV IV+ + +   +  ++   +I +++I T A L   G +L + ++
Sbjct: 339 SINEVYKTIFEAAVLVAIVVLVFLQSWRTAIIPIIAIPVSLIGTFAFLLAFGFSLNMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +        +   +  +  +   + +   ++  +   +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNLALGMTPKEASHVTMNEVGTAVLAISLVLIAVFLPT 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   R FA+T+ ++  IS   ++++  A+   ++R    K  +         +
Sbjct: 459 AFIPGITGQFYRQFAVTISIATAISCLNSLTLSPAIAAIVLRPHDHKKSNNIVSRFGHAL 518

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLF 565
            D     F         +        + L  
Sbjct: 519 GDGFNRGFEAMSRGYSWVIRHLVTTWVALGC 549



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 50/451 (11%), Positives = 135/451 (29%), Gaps = 30/451 (6%)

Query: 401  TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
              A+++         + AG          ++ ++    +    + +S   +      + +
Sbjct: 603  ATAIINKTPGVENAVAFAGFNGATFTNASNSGVIFTPFKPFEERLKSGETA-SKIIGQLF 661

Query: 461  STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              +       +IA       G G   GF + +       M   + +   +M    + K +
Sbjct: 662  GNLQGIQEAFIIAIPPPSIRGVGNSGGFKMQIMDRENPDMRRILPLAYQLMGAAAQNKGV 721

Query: 521  KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
              +     +        +     RA    +         ++   + +  N       G  
Sbjct: 722  SGVFTTFSANSPQYFLAVDRDKARALNVPIPNIFETLSINLGTSYVNDFN-----AFGRV 776

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              V A       + R ++ +L++   +           +R    P         + +  +
Sbjct: 777  YQVRAQADQQYRMDREDILALKVRSATGALVPLGTLVDIRDTTGPTLVQRYNMYVSVPLQ 836

Query: 641  KITEIVPLST--------------IQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIW 685
                    +                  T     +++ +    G   V I +   + +++ 
Sbjct: 837  GNPGPGVSTGSALDTMEGLAKNLLPTGTTFEWTELAYQERNTGNTAVYIFALSVIFVFLA 896

Query: 686  I---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +      W   L  I  + L +   L    L G++ N+     ++ LIG +  + +++ +
Sbjct: 897  LAAQYESWTLPLAIILIVPLAVLAALIGVHLRGMDNNILTQIGLIVLIGLAAKNAILIVE 956

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              R   +      S  +   ++ +  L   + T+ A    V+P+ +    G  +  S   
Sbjct: 957  FAR---QAQLEGKSAVEAAIEASHLRLRPILMTAFAFIFGVVPLMIATGPGAEMRQSLGT 1013

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  G++      +F+     + +   R + 
Sbjct: 1014 AVFSGMLGVTLFGLFLTPVFYVVLRRRRKQP 1044



 Score = 39.3 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 84/241 (34%), Gaps = 7/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q    +          L        +++     +E   K + +  P 
Sbjct: 263 VQLQDVARIELGAQDYVTNSYLNGSPAVALGVFARPGTNALDAAADIEKTMKNLAQDFPQ 322

Query: 649 STIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                      +   E I +    +   + +  ++ +     W  A+  I  + + +  T
Sbjct: 323 GLEYRIIYNPTEFIAESINEVYKTIFEAAVLVAIVVLVFLQSWRTAIIPIIAIPVSLIGT 382

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             F   FG   N+  +  ++  IG  V+D +VV + + +N+ L    ++ ++    ++NE
Sbjct: 383 FAFLLAFGFSLNMLTLFGLVLAIGIVVDDAIVVVENVERNLAL---GMTPKEASHVTMNE 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  S+      LP A      G     FA+ ++    ++  +S+ ++  I   + 
Sbjct: 440 VGTAVLAISLVLIAVFLPTAFIPGITGQFYRQFAVTISIATAISCLNSLTLSPAIAAIVL 499

Query: 825 D 825
            
Sbjct: 500 R 500


>gi|218892024|ref|YP_002440891.1| multidrug efflux protein [Pseudomonas aeruginosa LESB58]
 gi|218772250|emb|CAW28032.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter [Pseudomonas aeruginosa LESB58]
          Length = 1045

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 77/684 (11%), Positives = 189/684 (27%), Gaps = 43/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPVFAWVISLLIVLAGVLAI-----RFLPVAQYPDIAPPVV---------NVSASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +    Q  +TL+F      +  A +V   L+ V
Sbjct: 54  AKVVEEAVTAIIEREMNGAPGLLYTKATSSTGQASLTLTFRQGVNADLAAVEVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +++ +      +   ++           A+E         +  +   E   +
Sbjct: 114 ESRLPESVRRDGIYVEKAADSIQLIVTLTSSSGRYDAMELGEIASSNVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP++L  +  + + +       N        G   + DS      
Sbjct: 174 VETWGA-EYAMRIWPDPAKLTSMNLSASDLVNAVRRHNARLTVGDIGNLGVPDSAPISAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+    +                 +                      +    +       
Sbjct: 233 VKVDDTL-------------VTPEQFGEIPLRIRADGGAIRLRDVARVEFGQSEYGFVSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L           +          S    
Sbjct: 280 VNRMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSYNIPYDTSAFVEISIRKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+++ +   +  L+    + + ++ T  ++  LG ++ + ++ G+VL
Sbjct: 340 VSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  S   +      +    I    +  +   V + FF 
Sbjct: 400 AIGILVDDAIIVVENVERLMAEEGLSPHDATVKAMRQISGAIVGITVVLVSVFVPMAFFS 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+T+ +SI  S F A+S+  A+   +          +       +   L 
Sbjct: 460 GAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLRPIDADHHEKRGFFGWFNRAFLR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                 + +A    R   W +  +++  + ++  +         + +G   + V+     
Sbjct: 520 LTGRYRNAVAGILARPIRWMLVYALVIGVVALLFVRLPQAFLPEEDQGDFMIMVMQPEGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            ++   +N+  ++      +       + V      GD  +   +   +K          
Sbjct: 580 PMAETMANVGDVERYLAEHEPVA--YAYAVGGFSLYGDGTSSAMIFATLKDWSERREASQ 637

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            +        +    L  + +  +
Sbjct: 638 HVGAIVERINQRFAGLPNRTVYAM 661



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 76/200 (38%), Gaps = 6/200 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A  + +     +++   P     N            IRK +  ++ + + +   +++  +
Sbjct: 300 ATAKRIRATLDELSRYFPEGVSYNIPYDTSAFVEISIRKVVSTLLEAMLLVFAVMYLFMQ 359

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + +  T       G   N+  +  ++  IG  V+D ++V + +    
Sbjct: 360 NFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVLAIGILVDDAIIVVENV--ER 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  D   K++ +  G  V  ++      +PMA + G+V      FA+ +A  I
Sbjct: 418 LMAEEGLSPHDATVKAMRQISGAIVGITVVLVSVFVPMAFFSGAVGNIYRQFAVTLAVSI 477

Query: 806 VVAASSSIFIAAPILLFIYD 825
             +A  ++ +   +   +  
Sbjct: 478 GFSAFLALSLTPALCATLLR 497



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 89/263 (33%), Gaps = 11/263 (4%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            GID  G + +       V L+       +L    ++  N     N   +         A 
Sbjct: 776  GIDDIGRLHVRNEQGEMVPLATFAKAAWTLGPPQLTRYNGYPSFNLEGQAAPGYSSGEAM 835

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              + ++++     I    + Q+ E              +  + +  I  L    +   W 
Sbjct: 836  QAMEQLMQGLPEGIAHEWSGQSFEERLSGAQAP----ALFALSV-LIVFLALAALYESWS 890

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I  + L +   L   +L G+  ++     ++T+IG S  + +++ +  +     Y
Sbjct: 891  IPLAVILVVPLGVLGALLGVSLRGLPNDIYFKVGLITIIGLSAKNAILIIEVAKD---HY 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S      ++    L   V TS+A    V+P+A+    G     +    +  GIV A
Sbjct: 948  QEGMSLLQATLEAARLRLRPIVMTSLAFGFGVIPLALSSGAGSGAQVAIGTGVLGGIVTA 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F+     L +        
Sbjct: 1008 TVLAVFLVPLFFLVVGRLFRLRK 1030


>gi|15597214|ref|NP_250708.1| multidrug efflux protein [Pseudomonas aeruginosa PAO1]
 gi|107101447|ref|ZP_01365365.1| hypothetical protein PaerPA_01002487 [Pseudomonas aeruginosa PACS2]
 gi|6502952|gb|AAF14523.1|AF147719_3 putative RND transporter [Pseudomonas aeruginosa PAO1]
 gi|9948022|gb|AAG05406.1|AE004628_4 Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter [Pseudomonas aeruginosa PAO1]
          Length = 1045

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 77/684 (11%), Positives = 189/684 (27%), Gaps = 43/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPVFAWVISLLIVLAGVLAI-----RFLPVAQYPDIAPPVV---------NVSASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +    Q  +TL+F      +  A +V   L+ V
Sbjct: 54  AKVVEEAVTAIIEREMNGAPGLLYTKATSSTGQASLTLTFRQGVNADLAAVEVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +++ +      +   ++           A+E         +  +   E   +
Sbjct: 114 ESRLPESVRRDGIYVEKAADSIQLIVTLTSSSGRYDAMELGEIASSNVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP++L  +  + + +       N        G   + DS      
Sbjct: 174 VETWGA-EYAMRIWPDPAKLTSMNLSASDLVNAVRRHNARLTVGDIGNLGVPDSAPISAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+    +                 +                      +    +       
Sbjct: 233 VKVDDTL-------------VTPEQFGEIPLRIRADGGAIRLRDVARVEFGQSEYGFVSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L           +          S    
Sbjct: 280 VNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSYNIPYDTSAFVEISIRKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+++ +   +  L+    + + ++ T  ++  LG ++ + ++ G+VL
Sbjct: 340 VSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  S   +      +    I    +  +   V + FF 
Sbjct: 400 AIGILVDDAIIVVENVERLMAEEGLSPHDATVKAMRQISGAIVGITVVLVSVFVPMAFFS 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+T+ +SI  S F A+S+  A+   +          +       +   L 
Sbjct: 460 GAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLRPIDADHHEKRGFFGWFNRAFLR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                 + +A    R   W +  +++  + ++  +         + +G   + V+     
Sbjct: 520 LTGRYRNAVAGILARPIRWMLVYTLVIGVVALLFVRLPQAFLPEEDQGDFMIMVMQPEGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            ++   +N+  ++      +       + V      GD  +   +   +K          
Sbjct: 580 PMAETMANVGDVERYLAEHEPVA--YAYAVGGFSLYGDGTSSAMIFATLKDWSERREASQ 637

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            +        +    L  + +  +
Sbjct: 638 HVGAIVERINQRFAGLPNRTVYAM 661



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 82/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +        L        ++VA  + +     +++   P     
Sbjct: 263 DVARVEFGQSEYGFVSRVNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSY 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N            IRK +  ++ + + +   +++  + +   L     + + +  T    
Sbjct: 323 NIPYDTSAFVEISIRKVVSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVM 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  +  ++  IG  V+D ++V + +     +    +S  D   K++ +  G 
Sbjct: 383 LGLGFSINVLTMFGMVLAIGILVDDAIIVVENV--ERLMAEEGLSPHDATVKAMRQISGA 440

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  ++      +PMA + G+V      FA+ +A  I  +A  ++ +   +   +  
Sbjct: 441 IVGITVVLVSVFVPMAFFSGAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLR 497



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 89/263 (33%), Gaps = 11/263 (4%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            GID  G + +       V L+       +L    ++  N     N   +         A 
Sbjct: 776  GIDDIGRLHVRNEQGEMVPLATFAKAAWTLGPPQLTRYNGYPSFNLEGQAAPGYSSGEAM 835

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              + ++++     I    + Q+ E              +  + +  I  L    +   W 
Sbjct: 836  QAMEQLMQGLPEGIAHEWSGQSFEERLSGAQAP----ALFALSV-LIVFLALAALYESWS 890

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I  + L +   L   +L G+  ++     ++T+IG S  + +++ +  +     Y
Sbjct: 891  IPLAVILVVPLGVLGALLGVSLRGLPNDIYFKVGLITIIGLSAKNAILIIEVAKD---HY 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S      ++    L   V TS+A    V+P+A+    G     +    +  GIV A
Sbjct: 948  QEGMSLLQATLEAARLRLRPIVMTSLAFGFGVVPLALSSGAGSGAQVAIGTGVLGGIVTA 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F+     L +        
Sbjct: 1008 TVLAVFLVPLFFLVVGRLFRLRK 1030


>gi|254250461|ref|ZP_04943780.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia
           PC184]
 gi|124879595|gb|EAY66951.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia
           PC184]
          Length = 1063

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/515 (11%), Positives = 141/515 (27%), Gaps = 32/515 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               ++L  ++   G L           +  +P   P   +                   
Sbjct: 11  PVLAIVLSIVLTIAGALA-----YFSLAVSEYPDIAPPTVM---------IQATYPGASA 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGV 122
           + V+  +    +   + ++             +  IT++F      +     V   +   
Sbjct: 57  ETVSQTVSTPIELEVNGVEDMLYMYSQATSDGSLNITVTFKPGTDVDKAQVLVQNRVALA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    +++ +         +              +  S   IR   D +   E    
Sbjct: 117 TPRLPEPVQRSGVSVRKSSPTQLGTIFLYSPDQRYDPLYVSNYAIRNVADVLKRIEGVGD 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP R+     + A +       N    G +     + +      L
Sbjct: 177 INALGAREYSMRIWLDPERVASFGLSPADLIAAVRAQNTQLAGGVVAQAPITNQAFQPNL 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                    +       +       R         +            
Sbjct: 237 I--------------FEGRLKRPEDFSDIVVKQGKDGRLVRLKDVARVEVGALAYATDSY 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +   T+       A L        +  +          S    
Sbjct: 283 MLRHPTIALQVLQQPGANAVATMAAVEKKMAELSRDFPKGIVYNIGYNPTAFIGDSIHEL 342

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV+ V+ + +   +  ++   SI ++++ T A +++LG ++   ++ G+VL
Sbjct: 343 VKTIYEAVVLVVFVVLLFLQGWRPSIIPILSIPVSLVGTFAAMAVLGYSINNLTLFGLVL 402

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFF 479
            +G+ VD+ I+V E +            +  +       A   I        + T  +  
Sbjct: 403 AVGIVVDNAIVVVENVERHLAAGAGPRDATLLTMKEVGGALFAITLVLCAVFVPTSFIPG 462

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R F +T+ +S  IS FT++++  A+   +
Sbjct: 463 ISGQFFRQFGVTIAVSTAISFFTSVTLAPALSAMM 497



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  I ++ + +  T    A+ G   N   +  ++  +G  V++ +VV + +    +
Sbjct: 364 WRPSIIPILSIPVSLVGTFAAMAVLGYSINNLTLFGLVLAVGIVVDNAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                   RD    ++ E  G     ++      +P +      G     F + +A    
Sbjct: 421 HLAAGAGPRDATLLTMKEVGGALFAITLVLCAVFVPTSFIPGISGQFFRQFGVTIAVSTA 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++  +S+ +A  +   +  
Sbjct: 481 ISFFTSVTLAPALSAMMLK 499



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 52/145 (35%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +  + + +          G + N+      + L+G +  + +++ +  R   
Sbjct: 910  SWSLPVSILLIVPMCLLAASLGVRALGQDVNILTQIGFIVLVGLAAKNAILIVEVAR--- 966

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L        + + ++  + L   V TS+A  + VLP+ +    G  +  +    + FG+
Sbjct: 967  QLEADGAELVEAVVEACVQRLRPIVMTSLAFILGVLPLVISEGAGAEMRQAVGAAVFFGM 1026

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +       + +     + 
Sbjct: 1027 IGVTFFGLLFTPVFYVMVRRLAMRK 1051


>gi|257461015|ref|ZP_05626113.1| AcrB protein [Campylobacter gracilis RM3268]
 gi|257441389|gb|EEV16534.1| AcrB protein [Campylobacter gracilis RM3268]
          Length = 1052

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/674 (10%), Positives = 186/674 (27%), Gaps = 40/674 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L      L  S ++ +P   P   +                 +
Sbjct: 9   RPVFACVVSIIIVIAGVLA-----LKNSSVEEYPQLTPPQIV---------VSATYSGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S     + +I + F       +    V   +  
Sbjct: 55  AQTIADVVAAPLENAINGVENMIYMESSASSSGDVRINVYFQIGTNPADAKVNVNNRVTP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + ++  +  T      + +            +E    +    +D++       
Sbjct: 115 ALTLLPDEVRRYGVTVTERSSTMLEVLAFYDPSEQMDVVEMQNYVAINVVDELKRVSGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P  L++   TTA++       N+       G + +   +   Y
Sbjct: 175 EAQALGTKDYAMRIWVKPELLKKFNVTTAEIIAAISEQNSQYAAGKMGEQPMNLGNPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +                 +    I   +             +    A      
Sbjct: 235 AIKPEGRL-------------KTVEEFENIIIRAQKDGNFLRVKDVAEVKLGGASYNISA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   +   ++  +    +E        L+          V          S   
Sbjct: 282 KFNGKEMVPVLIFMQSGANALAVVEAVNKRIDELKPNFPGELTYDVAYDTTSFVKVSIEE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  ++   +  +++      +   G ++ L ++  ++
Sbjct: 342 VIHTFIEALILVIIVMYMFLGNLRATIIPTLAAPVSICGAFIGIYAFGFSINLITLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+ VD  I+V E +     +   +  S+    ++A   I    I+ ++    +F   
Sbjct: 402 LAIGIVVDDAIIVIENVERILHEEPDL--SVKEATTKAMGEIVAPVISIVLVLSAVFVPV 459

Query: 480 -----FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---KMKSIDINPLSRF 531
                F G   R FA+T+  S+  S F A+++  A+   I++ K       I        
Sbjct: 460 AFMEGFTGVMQRQFALTLVASVCFSGFVALTLTPALCALILQKKESEPFFFIRWFNNLFS 519

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                  A   M  R   + +  +  I    +        G+         +        
Sbjct: 520 ISTKIYAAGVGMVLRHVLISLVFVGIIIYAMVKLLVLTPSGLVPNEDKGSIMAMTTLPSA 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S +              + +   K+      Y       +        K           
Sbjct: 580 STLPRTEADQDFIASIAKKYPNVKDITQITGYDMLAGALRENAGAFFMKLKDWKDRPGDE 639

Query: 652 QNTEIVGPKISREL 665
            +   +   ++ +L
Sbjct: 640 NSNFALAAALNGQL 653



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 82/242 (33%), Gaps = 5/242 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  V          +IS +    E   ++       +++A    +     ++    P   
Sbjct: 264 VKDVAEVKLGGASYNISAKFNGKEMVPVLIFMQSGANALAVVEAVNKRIDELKPNFPGEL 323

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLG 709
             +         +  I + I   I + I ++I +          +       + I     
Sbjct: 324 TYDVAYDTTSFVKVSIEEVIHTFIEALILVIIVMYMFLGNLRATIIPTLAAPVSICGAFI 383

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               FG   NL  + A++  IG  V+D ++V + + + +      +S ++   K++ E +
Sbjct: 384 GIYAFGFSINLITLFALILAIGIVVDDAIIVIENV-ERILHEEPDLSVKEATTKAMGEIV 442

Query: 770 GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +   +      +P+A    + G +   FA+ +   +  +   ++ +   +   I   
Sbjct: 443 APVISIVLVLSAVFVPVAFMEGFTGVMQRQFALTLVASVCFSGFVALTLTPALCALILQK 502

Query: 827 RA 828
           + 
Sbjct: 503 KE 504



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 69/177 (38%), Gaps = 14/177 (7%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              KG    +   I + + +  ++ +W   L  +T +   +   L F    G+  ++    
Sbjct: 869  TGKGAQAFVFGMIFVFLILAAQYERWLMPLAVLTAVPFSVFGALVFTYFRGLNNDIYFQI 928

Query: 725  AVLTLIGYSVNDKVVVYDR-MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             +L LIG +  + +++ +  M +++  +       +   ++        V TS+A  + V
Sbjct: 929  GLLLLIGLAAKNAILIVEFAMNEHLNNHR---PIAEAAVEAAKMRFRPIVMTSLAFGLGV 985

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF------IYDWRAKNA 831
            LPM +    G +   +    +  G++ A++ +IF                D R K A
Sbjct: 986  LPMVIATGAGAASRHALGTGVVGGMLAASTIAIFFVPLFFYLLESFNAWLDRRGKKA 1042


>gi|163781954|ref|ZP_02176954.1| protein export membrane protein SecD [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883174|gb|EDP76678.1| protein export membrane protein SecD [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 498

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 158/526 (30%), Positives = 281/526 (53%), Gaps = 34/526 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+N  + +I ++++  + L + L                    ++LGLDLRGG  +VLE 
Sbjct: 1   MKNTTYNLIGFALLVILSLAVVLY-----------------KPVNLGLDLRGGISMVLEP 43

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D    +    +  +  +   L+++G+ +  +    +++ + + +      I + V   +Q
Sbjct: 44  DYSKALKHEYEKTARLVEKTLREKGLRILDVLAYPDRLEIEYLEESELPRIEEAVRDIIQ 103

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                        ++    E  + +  S   ++Q     I+Q++E++R RID++G+++  
Sbjct: 104 DA-----------VIERKGEGILRVTFSTAYLEQFRKDIIDQTIEVLRNRIDKLGVAQPV 152

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRD 235
           + RLG  RIL++LPG  D  R ++++G+TA +    V+ ++  +  +          L  
Sbjct: 153 VTRLGKERILVELPGFLDIERAKRIIGSTASLELKLVIDSSYSREELEKKLTKNTEILPS 212

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +G ++ + DKV +              +   P V        A +F E T  NIGK LA
Sbjct: 213 REGQEWFLVDKVPVISGSDLKTAYMTKDEFGAPAVGFELKSEAADKFGEFTYKNIGKRLA 272

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VL+ +V++APVI     S + QI+GNFT +    LA +LR G+LP  L I++E+ VG  
Sbjct: 273 IVLEDKVVSAPVIRS-RISDRGQITGNFTPQEVRDLALILRTGALPTSLKILQEKVVGPS 331

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG D+I +G  A V G  L++L +IV Y   G+ A  SI LN +L  A L+ LGATLTLP
Sbjct: 332 LGKDAIEQGIKAGVLGFFLLLLVVIVRYKTAGVSATVSILLNGLLLWAGLAGLGATLTLP 391

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGI+L +G+AVDSN+L+ ER++EE +   ++  ++++G+ R  S ++D++IT L+A++
Sbjct: 392 GIAGIILNMGIAVDSNVLIFERVKEELKLGNTLRKAIELGYRRTLSAVWDTHITLLVASL 451

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           +LF FG G V+GFA T+ +  + S  + +   +  + F+ + + +K
Sbjct: 452 ILFQFGSGPVKGFATTLAIGTIASFLSNVYYAKVFLDFLAKRRWLK 497



 Score =  107 bits (267), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 37/178 (20%), Positives = 84/178 (47%), Gaps = 4/178 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             ++VGP + ++ I +GI   ++    +L+ + +R+K    + A  +++L+        A
Sbjct: 324 QEKVVGPSLGKDAIEQGIKAGVLGFFLLLLVVIVRYK-TAGVSATVSILLNGLLLWAGLA 382

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G    L  +A ++  +G +V+  V++++R+++ +KL     + R  I+     TL   
Sbjct: 383 GLGATLTLPGIAGIILNMGIAVDSNVLIFERVKEELKL---GNTLRKAIELGYRRTLSAV 439

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T +   ++ L +  +G   +  FA  +A G + +  S+++ A   L F+   R   
Sbjct: 440 WDTHITLLVASLILFQFGSGPVKGFATTLAIGTIASFLSNVYYAKVFLDFLAKRRWLK 497


>gi|319794016|ref|YP_004155656.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Variovorax paradoxus EPS]
 gi|315596479|gb|ADU37545.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Variovorax paradoxus EPS]
          Length = 1095

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 68/585 (11%), Positives = 154/585 (26%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GL+      L    +  +P   P + +                  
Sbjct: 10  RPIFAGVLSLLMLIAGLIA-----LRGLPISEYPEVAPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D +   E   
Sbjct: 116 AEPRLPEEVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   + + +       N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    A      
Sbjct: 236 SINAQGRLQSEE-------------EFGDIIVKSGTDGAVTRLRDIGRLEMGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L           +          S   
Sbjct: 283 LLNNDPAVGMGVFQAPGSNALDISANVRKTMEELNKNMPEGLEYRIAYDPTQFVRASIES 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++VI T A+L +LG ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   ++R        +       F  +  
Sbjct: 463 GLTGQFYRQFAVTIAISTVISAINSLTLSPALAALLLRGHDQPKDALTRGMDKAFGWLFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R      G           +L  +     + F     +
Sbjct: 523 GFNKLFHRGSEAYSGGVKNVISRKALMLAIYVALIAVTFGLFKAV 567



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/396 (10%), Positives = 122/396 (30%), Gaps = 32/396 (8%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
            ++    + A+S+I D+ I            G G   GF + +     +      + V+A 
Sbjct: 654  AVAGQLNGAFSSIQDAFIVMF---PPPPVAGLGTTGGFKLQIEDRASVGYDQMDAAVKAF 710

Query: 511  MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
            M       ++  +  +       +   I     R     V          +  L+ +  N
Sbjct: 711  MAKAYATPELTGMFTSWQVNVPQLYADIDRTKARQLGVPVTDIFDTMQIYLGSLYANDFN 770

Query: 571  YG-----------------IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                                +  G +++   +   V L+ +     +         N   
Sbjct: 771  KFGRTYSVRVQADAPYRARAEDVGLLKVRSTSGEMVPLAALMKVNSTFGPERAMRYNGYL 830

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              +             AQ  + ++  + + + V                        +  
Sbjct: 831  AADINGGPAPGYSSGQAQDAITKIAAETLPKGVSF-----EWTELTYQEILAGNSAFLVF 885

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ + + + +  +++     +  I  + + I   +    + G + N+     ++ L+G 
Sbjct: 886  PLAILLVFLVLAAQYESLTLPIAIILIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGL 945

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +  R+   L     +      ++    L   + TS+A  + VLP+ +    
Sbjct: 946  SAKNAILIVEFARE---LEFAGRTPIQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGA 1002

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  +  +  + +  G++   +  +F+     + +  
Sbjct: 1003 GSEMRKAMGVAVFAGMIGVTAFGLFLTPVFYVLLRR 1038



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 81/232 (34%), Gaps = 17/232 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L +     +      G     +    +         + E ++ +I 
Sbjct: 270 RLEMGAADYSLRSLLNNDPAVGMGVFQAPGSNALDISANVRKTMEELNKNMPEGLEYRIA 329

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   +    +V ++               W  ++  +  + + 
Sbjct: 330 YDPTQFVRASIESVIHTLLEAIALVVLVVILFLQT-----------WRASIIPLLAVPVS 378

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T     + G   N  ++  ++  IG  V+D +VV + + +N++     ++ R+   +
Sbjct: 379 VIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEA---GLTPREATYR 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           ++ E  G  +  ++      +P+A      G     FA+ +A   V++A +S
Sbjct: 436 AMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTVISAINS 487


>gi|327393831|dbj|BAK11253.1| multidrug resistance protein MexB [Pantoea ananatis AJ13355]
          Length = 1051

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 146/552 (26%), Gaps = 39/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P               + +  + 
Sbjct: 10  RPIFAAVLSVLIFMTGLIAI-----PLLPISEYPDVVPP-------------SVQVRAEY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                  +    +  L   +   E +         + +   T++F      +    +V  
Sbjct: 52  PGANPKAIADSVATPLEEAINGVENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  D ++  + T        ++           ++        +  D++   
Sbjct: 112 RVAQAEARLPEDVRRLGITTQKMSPTLTLVVHLFSPNNTYDSLYLRNYATLKVKDELARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP+++     T + +       N        G   L+   
Sbjct: 172 PGVGQIQIFGAGEYAMRVWLDPNKVAARGLTASDVVKAMQEQNVQVSAGQLGAEPLKKQS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                 I       
Sbjct: 232 DFLLSINMQGRLENEQ-------------QFGDIILKTSEDGSLVRLRDVARIEMGSGSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +              L                      
Sbjct: 279 ALRSQLNNKDAVGIGIFQAPGANAIDLSNAVRAKMDELATRFPNDVKWAAPYDPTVFVRD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+
Sbjct: 339 SIKAVVQTLLEAVFLVVLVVILFLQTWRASIIPLLAVPVSVVGTFSVLYLLGFSLNTLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +        S   +           I    +      V +
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIEMGLSPKAAAHQAMREVSGPIIAIALVLCAVFVPM 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + FA T+ +S +IS   ++++  A+   +++  +        L      
Sbjct: 459 AFLSGVTGQFYKQFATTIAISTVISAINSLTLSPALAAMLLKDHQAPKDMPTRLIDRLFG 518

Query: 535 PDCIAIQFMRAR 546
                      R
Sbjct: 519 WIFRPFNRFFQR 530



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSVVGTFSVLYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
           +    +S +    +++ E  G  +        +V     +     G     FA  +A   
Sbjct: 425 M---GLSPKAAAHQAMREVSGPII-AIALVLCAVFVPMAFLSGVTGQFYKQFATTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAINSLTLSPALAAMLLK 500



 Score = 48.1 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 56/149 (37%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPVTMLSALVGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     + +  G
Sbjct: 958  -LEIQGKGITEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGEGAGAEVRGVTGVTVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     + A +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRKAAL 1044


>gi|296389571|ref|ZP_06879046.1| multidrug efflux protein [Pseudomonas aeruginosa PAb1]
          Length = 1045

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 80/682 (11%), Positives = 184/682 (26%), Gaps = 39/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPVFAWVISLLIVLAGVLAI-----RFLPVAQYPDIAPPVV---------NVSASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +    Q  +TL+F      +  A +V   L+ V
Sbjct: 54  AKVVEEAVTAIIEREMNGAPGLLYTKATSSTGQASLTLTFRQGVNADLAAVEVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +++ +      +   ++           A+E         +  +   E   +
Sbjct: 114 ESRLPESVRRDGIYVEKAADSIQLIVTLTSSSGRYDAMELGEIASSNVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP++L  +  + + +       N        G   + DS      
Sbjct: 174 VETWGA-EYAMRIWPDPAKLTSMNLSASDLVNAVRRHNARLTVGDIGNLGVPDSAPISAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+    +                 +                      +    +       
Sbjct: 233 VKVDDTL-------------VTPEQFGEIPLRIRADGGAIRLRDVARVEFGQSEYGFVSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L           +          S    
Sbjct: 280 VNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSYNIPYDTSAFVEISIRKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+++ +   +  L+    + + ++ T  ++  LG ++ + ++ G+VL
Sbjct: 340 VSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  S   +      +    I    +  +   V + FF 
Sbjct: 400 AIGILVDDAIIVVENVERLMAEEGLSPHDATVKAMRQISGAIVGITVVLVSVFVPMAFFS 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +SI  S F A+S+  A+   ++R       +      +F      
Sbjct: 460 GAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLRPIDADHHEKRGFFGWFNRAFLR 519

Query: 539 AIQFMR-------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                R       AR     +     I  + LLF       +  +      ++  +P   
Sbjct: 520 LTGRYRNAVAGILARPVRWMLVYALVIGVVALLFVRLPQAFLPEEDQGDFMIMVMQPEGT 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            +  +      +     ++      + V      GD  +   +   +K           +
Sbjct: 580 PMAETMANVADVERYLAEHEPVAYAYAVGGFSLYGDGTSSAMIFATLKDWSERREASQHV 639

Query: 652 QNTEIVGPKISRELIRKGIVGV 673
                   +    L  + +  +
Sbjct: 640 GAIVERINQRFAGLPNRTVYAM 661



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 82/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +        L        ++VA  + +     +++   P     
Sbjct: 263 DVARVEFGQSEYGFVSRVNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSY 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N            IRK +  ++ + + +   +++  + +   L     + + +  T    
Sbjct: 323 NIPYDTSAFVEISIRKVVSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVM 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  +  ++  IG  V+D ++V + +     +    +S  D   K++ +  G 
Sbjct: 383 LGLGFSINVLTMFGMVLAIGILVDDAIIVVENV--ERLMAEEGLSPHDATVKAMRQISGA 440

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  ++      +PMA + G+V      FA+ +A  I  +A  ++ +   +   +  
Sbjct: 441 IVGITVVLVSVFVPMAFFSGAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLR 497



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 89/263 (33%), Gaps = 11/263 (4%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            GID  G + +       V L+       +L    ++  N     N   +         A 
Sbjct: 776  GIDDIGRLHVRNEQGEMVPLATFAKAAWTLGPPQLTRYNGYPSFNLEGQAAPGYSSGEAM 835

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              + E+++     I    + Q+ E              +  + +  I  L    +   W 
Sbjct: 836  QAMEELMQGLPEGIAHEWSGQSFEERLSGAQAP----ALFALSV-LIVFLALAALYESWS 890

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I  + L +   L   +L G+  ++     ++T+IG S  + +++ +  +     Y
Sbjct: 891  IPLAVILVVPLGVLGALLGVSLRGLPNDIYFKVGLITIIGLSAKNAILIIEVAKD---HY 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S      ++    L   V TS+A    V+P+A+    G     +    +  GIV A
Sbjct: 948  QEGMSLLQATLEAARLRLRPIVMTSLAFGFGVVPLALSSGAGSGAQVAIGTGVLGGIVTA 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F+     L +        
Sbjct: 1008 TVLAVFLVPLFFLVVGRLFRLRK 1030


>gi|150002915|ref|YP_001297659.1| putative cation efflux pump [Bacteroides vulgatus ATCC 8482]
 gi|294777944|ref|ZP_06743380.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides vulgatus PC510]
 gi|149931339|gb|ABR38037.1| putative cation efflux pump [Bacteroides vulgatus ATCC 8482]
 gi|294448208|gb|EFG16772.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides vulgatus PC510]
          Length = 1038

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 77/610 (12%), Positives = 176/610 (28%), Gaps = 46/610 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLFVVAGLVT-----LNILPVAQYPDITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++F      +     V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSASGAYSLTVTFEVGTDIDMATVMVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L    K   +    +    +++   + D +    +  +       +DQ+   
Sbjct: 111 RVSVALNSLPEAVKVQGVTVQKQSSNIVMMLTLSGDSI-YDGLYLTNYANLNLVDQLTRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P  +R    T  ++       N        G      +D
Sbjct: 170 PGVGAVDVMGAGDYSMRVWLNPETMRIRNITPQQVYAAIQSQNMEVSAGYVGQPIGSSAD 229

Query: 238 G-NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY +  K  +S                +    I   E   +         I    A 
Sbjct: 230 NDFQYTLNVKGRLS-------------TPEEFGDIILRVEDQGKVLRLKDVAKIELGSAG 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +     +      A L           V         
Sbjct: 277 YGVVSRLKGQPTAAIAVYQLPGSNSLDVSKHVRARMAELAETFPAGVKYNVTLDTTDVVH 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F  +   +  L+   +I +++I TLA+++ LG ++   +
Sbjct: 337 DSIDEVMKTFVEAIILVVLVIFFFLQSWRAVLIPCLTIPVSLIGTLAVMAALGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L I + VD  I+V E       + +     + +         I       +   I
Sbjct: 397 LFGLILAIAIVVDDAIVVTENATRILDEGKLDARAATEQAMGEITGPIVGVVLVLLAVFI 456

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPL 528
            T ++    G   + FA+T+  S +IS F ++++  A+   +      +K    +  + +
Sbjct: 457 PTTLISGISGQLYKQFALTIAASTVISGFNSLTLTPAVCALLLRPTPTHKARLFLWFDKM 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           + +       +++++ AR      S +       L+F    +  I  +      +    P
Sbjct: 517 NDWMQRVYDASVKWLLARPVIAIGSYIVISVIAILMFVKWPSTFIPEEDDGYFMIAIQLP 576

Query: 589 VDLSVVRSNL 598
              S+ R+ +
Sbjct: 577 AASSLERTQM 586



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 74/238 (31%), Gaps = 10/238 (4%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V +   +      + +E     D   +        +         S      +  + K 
Sbjct: 788  VVNSKGEMVPFSSFTQIEQKLGMDQINRYNMYSAASITCTPAAGSSSGQAIEAMGSLIKN 847

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                       +      +         I+ ++++    L+       W   + A+  L 
Sbjct: 848  QLGGEFGYEWTSVAYQETQAGNTTTIILIMALLVAY---LVLAAQYESWTSPVAAVMGLP 904

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I   +    + G+  ++     ++ LI  S  + +++ +  R   K        R+  
Sbjct: 905  VAILGAMLGCWVMGVPVSIYTQIGIILLIALSAKNGILIVEFARDYRKA---GNPIREAA 961

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA-SSSIFI 815
             ++ +  L   + TS    + V+P+      G     +    + FG+ V    ++I+I
Sbjct: 962  YEAGHVRLRPILMTSFTFVLGVMPLLFATGAGAGSRVALGAAVVFGMAVNTIFATIYI 1019



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 85/240 (35%), Gaps = 12/240 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V           +  +        +   Q    +S+  ++ +     ++ E  P     
Sbjct: 266 DVAKIELGSAGYGVVSRLKGQPTAAIAVYQLPGSNSLDVSKHVRARMAELAETFPAGVKY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +    +  + I + +   + + I +++ I+     W   L    T+ + +  TL   
Sbjct: 326 NVTLDTTDVVHDSIDEVMKTFVEAIILVVLVIFFFLQSWRAVLIPCLTIPVSLIGTLAVM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINET 768
           A  G   N   +  ++  I   V+D +VV +   R+    KL       R   ++++ E 
Sbjct: 386 AALGFSINTLTLFGLILAIAIVVDDAIVVTENATRILDEGKL-----DARAATEQAMGEI 440

Query: 769 LGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  V   +      +P   + G  G +   FA+ +A   V++  +S+ +   +   +  
Sbjct: 441 TGPIVGVVLVLLAVFIPTTLISGISGQLYKQFALTIAASTVISGFNSLTLTPAVCALLLR 500


>gi|311106328|ref|YP_003979181.1| multidrug resistance protein [Achromobacter xylosoxidans A8]
 gi|310761017|gb|ADP16466.1| multidrug resistance protein MexB 2 [Achromobacter xylosoxidans A8]
          Length = 1047

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 71/573 (12%), Positives = 165/573 (28%), Gaps = 44/573 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   I   GLL           + ++PS  P               ++++  
Sbjct: 7   QRPNFALVIAIFISLAGLLAIF-----ALPVAQYPSVAPP-------------QVIIKAT 48

Query: 62  EDDFVNGFLQM-YSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVT 116
                   +       +   L   +G+  +  +   + +   T++F      +     V 
Sbjct: 49  YPGASAEVINNSVISLIEEELNGAKGLLYYESQSNSSGVAETTVTFEPGTNPDLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V S+L     +  L         +++            +  +    R   ++I  
Sbjct: 109 NRIKRVESRLPQAVIQQGLQLEQASSSFLLIYALTYKDAGKDQVGLADYAARNINNEIRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          L    DP++L     +  +++      N    G   G +    +
Sbjct: 169 VPGVGRVQMF-AAERALRIWIDPAKLVGYGLSVDEVNKAIAAQNVQVSGGSTGEQPSPST 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +                 I      
Sbjct: 228 QEITATIMVQGQLT-------------TIPEFEGIVLRANPDGSTVRLGDVARIELGRQD 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +   T +      A L           V         
Sbjct: 275 YRLSSRLNGQPAAAMGVQLAPGANALETAKGIKARLAELSKNFPGDMAYSVPFDTSVFVE 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            + S    T A    LV +V+ + +   ++ L+    + + ++ TLA++  LG ++ + +
Sbjct: 335 VAISKVLMTLAEAVVLVFLVMLLFLQNFRYTLIPTIVVPICLLGTLAVMLPLGFSVNMMT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +      +    I    +      +
Sbjct: 395 MFGMVLAIGILVDDAIVVVENVERLMAEEGLSPKEATIKAMGQISGAIVGITLVLAAVFL 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLS 529
            L F  G      R F++++ +SIL S F A+++  A+ I +   I     +        
Sbjct: 455 PLAFMTGSVGVIYRQFSVSLAVSILFSGFLALTLTPALSILLLKPIEKGHHEKKGFFGWF 514

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
                          AR       ++     + 
Sbjct: 515 NRVFARMTERYSATNARLLARSGRMMVLYAVLV 547



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 59/143 (41%), Gaps = 5/143 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           + + L     + + +  TL      G   N+  +  ++  IG  V+D +VV + +     
Sbjct: 362 FRYTLIPTIVVPICLLGTLAVMLPLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERL 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
           +    +S ++   K++ +  G  V  ++      LP+A   G   VI   F++ +A  I+
Sbjct: 420 MAEEGLSPKEATIKAMGQISGAIVGITLVLAAVFLPLAFMTGSVGVIYRQFSVSLAVSIL 479

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
            +   ++ +   + + +     K
Sbjct: 480 FSGFLALTLTPALSILLLKPIEK 502



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + +     +    + G+  ++     ++T+IG +  + +++ +  +   
Sbjct: 889  SWKIPASVLLIVPVGALGAVAAVIVAGLPNDVYFKVGLVTIIGLAAKNAILIIEFAKD-- 946

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L+    S ++   ++        V TS+A  + V+P+ +    G +   +    +  G+
Sbjct: 947  -LHEQGRSLKEAAIEAARLRFRPIVMTSVAFILGVVPLVIATGAGATSQRAIGTGVLGGM 1005

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            + A    +       ++      +  
Sbjct: 1006 LSATILGVLFVPVFFVWTLSVFKRPK 1031


>gi|220905190|ref|YP_002480502.1| preprotein translocase subunit SecF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869489|gb|ACL49824.1| protein-export membrane protein SecF [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 367

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 99/345 (28%), Positives = 166/345 (48%), Gaps = 49/345 (14%)

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICL-LFTHGLNYGIDFKGGIQLGVLANR 587
             F  +     I F+  R+W  GIS+   +  I   ++ +GL  GIDF GG+ + V    
Sbjct: 1   MSFTFVKHDTNIDFIGKRYWVYGISVALILIGIASAIWGNGLKMGIDFAGGVIVQVQFQE 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFD-GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           PV    ++ +L+   +  IS Q F  G +++L+R          Q R   +     T   
Sbjct: 61  PVADEALKKSLDIPALPGISTQRFGEGGRDYLLRFSSAENADATQLRTSVVDALAATFPG 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF------------------ 688
             + I   EIVGPK+  +L  K +  +  + + + +YI  RF                  
Sbjct: 121 NAAEIVRLEIVGPKVGADLTNKALSALYYAILLIAVYISGRFEQRWMAGVIMAGALWGGI 180

Query: 689 ----------------------------KWYFALGAITTLILDITKTLGFFALFGIEFNL 720
                                       +  FALGA+  LI D+  T+G  +L  +E +L
Sbjct: 181 YLAGLTGLSMGWLVMLALSITVLVCFVLRLNFALGAVVGLIHDVAITVGLLSLLDVEIDL 240

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +AA++TL+G+S+ND +++YDR+R+N++     +    LI+KS+N+TL R++ TS   F
Sbjct: 241 NVMAALMTLVGFSLNDTIIIYDRLRENLRATP-ELDMAHLINKSVNQTLSRTILTSGTTF 299

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +S L + + GG VI  FA+ M  G+VV  +SSI++++ +LL + D
Sbjct: 300 LSTLALYLLGGGVIHDFALTMLIGVVVGTASSIYVSSAMLLALGD 344


>gi|21241102|ref|NP_640684.1| multidrug efflux transporter [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21106401|gb|AAM35220.1| multidrug efflux transporter [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 1049

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 72/629 (11%), Positives = 169/629 (26%), Gaps = 35/629 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        L+++P+  P   I+                 
Sbjct: 8   RPIFAWVIAIVITLAGALSIL-----SLPLEQYPNIAPPT-IN--------VSATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L     +   S       ITL+F      +    +V   +  
Sbjct: 54  AQTVQNSVTQILEQQMTGLDHLLYMSSSSSSAGTASITLTFESGTDPDTAQVQVQNKVSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEK-EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + L    + N +  T        ++     +     + +    ++    D I      
Sbjct: 114 GEAMLPEAVQSNGVTVTKSTGSSMFMVLAFTSEDGSMDSTDIGDYMVSTLQDPISRLNGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP +LR      A +S      N        G           
Sbjct: 174 GGVNVFGS-EYAMRVWLDPEKLRTYSLMPADVSNAISAQNADVSSGALGALPAVQGQQLN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  + ++                 +    +   + G    +      +          
Sbjct: 233 ATVTSRSKL-------------KTPAQFEAIVLKSQPGGATVYLRDVARVELGSKSYASS 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   +          +     +        L+          V          S  
Sbjct: 280 SKYNGKSASGMGLELATGANALDAAKAVEAKLEQLKPYFPTGLTYEVAYDTTPFVRISIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+++ +   +  LV   ++ + ++ T  +L+LLG ++   ++  +
Sbjct: 340 EVVKTLLEAIVLVVLVMYLFLQNWRATLVPVIAVPVVLLGTFGVLALLGYSINTLTMFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    + +  S   +      +    +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERLMSEQGMSPRQATYTSMGQISGALVGIALVLTAVFLPMAF 459

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FG   G   R F++T+  ++L+S+  A+++  A+   +          ++          
Sbjct: 460 FGGATGEIYRQFSVTIAAAMLLSLLVALTLSPALCASL-LRPIAHGQQVSRKGVLGRFFG 518

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              ++F R                      +     +      +L        D  ++  
Sbjct: 519 WFNVRFDRGADGYGRGVGKLIGHRKLGGLVYLALLVVMALLFWRLPSSFLPDEDQGMLMV 578

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              +             ++     L+   
Sbjct: 579 MFTTPAGATQQRTQQSIDQATSFILKQPE 607



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 46/405 (11%), Positives = 119/405 (29%), Gaps = 10/405 (2%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L  + ++ +    A I L      D +    +   + ++    +  ++         +  
Sbjct: 75  LLYMSSSSSSAGTASITLTFESGTDPDTAQVQVQNKVSQGEAMLPEAVQSNGVTVTKSTG 134

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            S    L  T          +  + ++     +      +  V            +    
Sbjct: 135 SSMFMVLAFTSEDGSMDSTDIGDYMVSTLQDPISR-LNGVGGVNVFGSEYAMRVWLDPEK 193

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +   S                   G   ++               +          + + 
Sbjct: 194 LRTYSLMPADVSNAISAQNADVSSGALGALPAVQGQQLNATVTSRSKLKTPAQFEAIVLK 253

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +        +R              +          +  +           + V+ K+ +
Sbjct: 254 SQPGGATVYLRDVARVELGSKSYASSSKYNGKSASGMGLELATGANALDAAKAVEAKLEQ 313

Query: 645 IVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           + P      T  V    +  +   I + +  ++ + + +++ +++  + W   L  +  +
Sbjct: 314 LKPYFPTGLTYEVAYDTTPFVRISIEEVVKTLLEAIVLVVLVMYLFLQNWRATLVPVIAV 373

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G  AL G   N   + A++  IG  V+D +VV + +     +    +S R  
Sbjct: 374 PVVLLGTFGVLALLGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERLMSEQGMSPRQA 431

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              S+ +  G  V  ++      LPMA +G   G +   F++ +A
Sbjct: 432 TYTSMGQISGALVGIALVLTAVFLPMAFFGGATGEIYRQFSVTIA 476



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 58/162 (35%), Gaps = 9/162 (5%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                ++ +   + +++    +   W   +  +  + + I   L    L G+  ++     
Sbjct: 870  AQTWMLYAVSLVFVFLCLAALYESWSIPISVMLAVPVGIVGALLATWLRGLSNDIYFQVG 929

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +L  +G +  + +++ +  ++   L        +    +    L   V TS+A  + VLP
Sbjct: 930  LLATMGLAAKNGILIVEFAKE---LEEKGQPLIEATLHAARMRLRPIVMTSLAFLLGVLP 986

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            M V    G     S    +  G +V+    IF      + + 
Sbjct: 987  MVVSSGAGSGGRHSLGTGVLGGTLVSTLLGIFFVPLFYVMVR 1028


>gi|26990139|ref|NP_745564.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida KT2440]
 gi|148547557|ref|YP_001267659.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           putida F1]
 gi|24985074|gb|AAN69028.1|AE016535_2 multidrug efflux RND transporter MexF [Pseudomonas putida KT2440]
 gi|148511615|gb|ABQ78475.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida F1]
 gi|313498628|gb|ADR59994.1| MexF [Pseudomonas putida BIRD-1]
          Length = 1059

 Score =  177 bits (449), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 75/595 (12%), Positives = 162/595 (27%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLVLLIAGSISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   I    D++       
Sbjct: 116 TQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T + +       N        G      S   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTASDVVAAIREQNRQVAAGQLGAPPAPGSTSFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    +      
Sbjct: 236 SINTQGRLVNEE-------------EFENIIIRAGADGEITRLKDIARVELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +     +      A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+V
Sbjct: 343 VVHTLFEALVLVVLVVILFLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     S     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIGLGLKPLEATQKAMSEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKDHHAPKDRFSRFLDKLLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F RA    VG        S   LF +    G+ + G            D
Sbjct: 523 SPFNRFFDRASHSYVGGVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQD 577



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 74/218 (33%), Gaps = 10/218 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS---- 676
            +  +   + A        +  I +++              ++ + I  G   +++     
Sbjct: 831  ITAEINGAAAPGYSSGQAEAAIEKLLKEELPNGMTFEWTDLTYQQILSGNTALLVFPLCV 890

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +A L+       W   L  I  + + +   +    + G + N+     ++ L+G +  +
Sbjct: 891  LLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKN 950

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ +  +         +     + ++    L   + TS+A  + V+P+      G  +
Sbjct: 951  AILIVEFAKDEQA---KGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEM 1007

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +  + +  G++      +F+       I  +  +  
Sbjct: 1008 RHAMGVAVFSGMIGVTVFGLFLTPVFFFLIRRFVERRQ 1045



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 87/236 (36%), Gaps = 17/236 (7%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L +     I      G     +  + +   +  +    E +   I     +    
Sbjct: 279 ALRSLLNNQPAVAIPIFQRPGSNAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRG 338

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E V   +   L+   +V ++               W  ++  +  + + +  T     
Sbjct: 339 SIEAVVHTLFEALVLVVLVVILFLQT-----------WRASIIPLLAVPVSLIGTFAVMH 387

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG   N  ++  ++  IG  V+D +VV + + +N+ L        +   K+++E  G  
Sbjct: 388 LFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIGLGLK---PLEATQKAMSEVTGPI 444

Query: 773 VYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + T++      +    + G  G     FA+ +A   V++A +S+ ++  +   +  
Sbjct: 445 IATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK 500


>gi|194291699|ref|YP_002007606.1| acriflavin resistance protein f [Cupriavidus taiwanensis LMG 19424]
 gi|193225603|emb|CAQ71549.1| multidrug transport protein, acriflavin resistance protein F (RND
           family); similar to E.coli acrB [Cupriavidus taiwanensis
           LMG 19424]
          Length = 1086

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 76/699 (10%), Positives = 189/699 (27%), Gaps = 54/699 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  IG +        +  +  +P  +P + +                  
Sbjct: 35  RPIFAGVLSVLIFLIGAISMF-----KLPISEYPEVVPPSVV---------VRAQYPGAN 80

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +   S +   +    +T++F      +     V   +
Sbjct: 81  PKVIAETVASPLEEQINGV--EDMLYMSSQSNSDGLLTLTVTFKLGTDPDKAQQLVQNRV 138

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +L  D ++  + T        ++                   +    D++   + 
Sbjct: 139 SQAEPRLPEDVRRLGITTVKSSPDLTMVVHLVSPNDRYDMTYLRNYAVINVKDRLARLQG 198

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P ++ +    T  +       N      + G          
Sbjct: 199 VGQVQLFGSGDYAMRVWLNPEKMAERQLATGDVIKAIREQNVQVAAGVIGQSPSLPGADL 258

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V  +  +S +              +    +          +      I    +    
Sbjct: 259 QLSVNAQGRLSTVE-------------EFGDIVVRTSADGAVTYLKDVARIELGASEYAL 305

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +     +        L+          +          S 
Sbjct: 306 RSLLDNKPAVAIPIFQAPGSNAIQISDDVRKTMEELKQNFPDGIDYSIVYDPTQFVRHSI 365

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++++ T  L+ L G ++   S+ G
Sbjct: 366 EAVTHTLFEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFGLMHLFGFSINALSLFG 425

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +T +   V L F
Sbjct: 426 LVLAIGIVVDDAIVVVENVERNIEEGLTPKEATYKAMREVSGPIIAIALTLIAVFVPLAF 485

Query: 480 F---GGGAVRGFAITMGLSILISMFTAISIVRA--------------MMIFIIRYKKMKS 522
                G   + FA+T+ +S +IS F ++++  A               +   +       
Sbjct: 486 MTGLTGQFYKQFALTISISTIISAFNSLTLSPALSALLLKSHDAPKDWLSRWMDRVFGGF 545

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                                  R  G    +   + ++       +  G       Q  
Sbjct: 546 FKRFNTFFGRSAESYGRGVKGVIRRKGSVFGVYAVMLALTWGVFQLVPKGFVPAQDKQYL 605

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D + +    + ++          G ++ +                  +     
Sbjct: 606 VGFAKLPDGATLDRTEDVIRKMSDIALKHPGVESAVAFPGLSINGFTNSPSAGIVFATLK 665

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                    ++ E+ G  I+ EL +K    +  + IA+ 
Sbjct: 666 PFED----RKSAELGGAAIAAELNQKYA-AIQDAFIAVF 699



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    L   + N+      + L+G S  + +++ +  R+  
Sbjct: 927  SLTLPLAVILIVPMSLLAAMTGVWLTQGDNNIFTQIGFIVLVGLSAKNAILIVEFARE-- 984

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS A  + V+P+ V    G  +  +  + +  G+
Sbjct: 985  -LEHHGRTVVQAASEASRLRLRPILMTSFAFIMGVVPLVVSTGAGAEMRHAMGVAVFAGM 1043

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +     +  R
Sbjct: 1044 LGVTFFGLFLTPVFYVALRLLATRGQR 1070



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 83/233 (35%), Gaps = 17/233 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     I      G     +    +      +    + +   I 
Sbjct: 295 RIELGASEYALRSLLDNKPAVAIPIFQAPGSNAIQISDDVRKTMEELKQNFPDGIDYSIV 354

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   +    +V ++               W  ++  +  + + 
Sbjct: 355 YDPTQFVRHSIEAVTHTLFEAIALVVLVVILFLQT-----------WRASIIPLLAVPVS 403

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T G   LFG   N  ++  ++  IG  V+D +VV + + +N++     ++ ++   K
Sbjct: 404 IVGTFGLMHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEE---GLTPKEATYK 460

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
           ++ E  G  +  ++      +P+A      G     FA+ ++   +++A +S+
Sbjct: 461 AMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTIISAFNSL 513


>gi|161520479|ref|YP_001583906.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           multivorans ATCC 17616]
 gi|189353330|ref|YP_001948957.1| putative cation/multidrug efflux pump [Burkholderia multivorans
           ATCC 17616]
 gi|221209725|ref|ZP_03582706.1| OqxB [Burkholderia multivorans CGD1]
 gi|160344529|gb|ABX17614.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia multivorans ATCC 17616]
 gi|189337352|dbj|BAG46421.1| putative cation/multidrug efflux pump [Burkholderia multivorans
           ATCC 17616]
 gi|221170413|gb|EEE02879.1| OqxB [Burkholderia multivorans CGD1]
          Length = 1057

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/585 (10%), Positives = 157/585 (26%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  +I  +GL+       P      +P  +P + +                  
Sbjct: 10  RPIFAVVLSIVIFALGLIAI-----PMLPAGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             + ++ ++F      +  A +V   +  
Sbjct: 56  PKEIAESVAEPLEEAINGVEGIMYMKSVAGSDGSLQVVVTFLPGVDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            ++     +     D++       
Sbjct: 116 ALSRLPDEVRQYGVTTQKQSPTPLMYVSLYSPDNSRDSLYLRNYLTLHVKDELSRLTGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL     T + +       N        G      +     
Sbjct: 176 DVGVYGSGDYAMRLWLDPNRLASRGLTASDVIAAVREQNVQVSAGQLGAEPSPKAHDFLV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +       +         I           
Sbjct: 236 SINVRGRLRTEQ-------------EFGDIVLRTGDDGQVVKLSDVARIELGAGDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L     P                S   
Sbjct: 283 YFNDRHSAVVGIFLSPGANALDVAKAVYAKLDELSKRFPPGVAYRPVWDPTVFVRESIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+ V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G+V
Sbjct: 343 VQHTLIEAVVLVVFVVILFLQTWRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+ VD  I+V E +     +  S   +           I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAQGLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFLS 462

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS   ++++  A+   ++         +       F  +  
Sbjct: 463 GVTGQFYKQFAVTIAISTVISAINSLTLSPALAAKLLHPHGAPKDALTRALDRGFGWLFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R+     G+          +   +             +
Sbjct: 523 PFNRFFERSSDRYHGVVARTLKRRGAVFAVYAALLAATALLLHAV 567



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  +  L G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S RD   +++ E  G  V  ++      +PMA   G        FA+ +A   V
Sbjct: 425 Q---GLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTV 481

Query: 807 VAASSSIFIAAPILLFI 823
           ++A +S+ ++  +   +
Sbjct: 482 ISAINSLTLSPALAAKL 498



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 81/243 (33%), Gaps = 11/243 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V +  + + + +     +   N     + +     +   S      LE + K +    
Sbjct: 801  EMVPIGSMVTVVPAYGPDPVVRYNGYPAADLIGDTDPKTMSSSQAIAKLEQIAKDVLPPG 860

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                  +        S       IV   ++ + + + +   ++ W   L  I  + + + 
Sbjct: 861  ITLEWTDLSYQQVTQSN----AAIVVFPLAVMLVFLVLASLYESWTLPLAVILIVPVCMC 916

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L    L G + N+     ++ L+G +  + +++ +  R+   L        D   ++ 
Sbjct: 917  AALFGVWLSGGDNNVFVQVGLVVLMGLACKNAILIVEFARE---LEIQGKRTIDAALEAC 973

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   V TS+A     +P+ +    G  V  +  + +  G++      +F+     + 
Sbjct: 974  RLRLRPIVMTSVAFIAGSVPLLIGSGAGSEVRAATGVTVFAGMLGVTLFGLFLTPVFYVT 1033

Query: 823  IYD 825
            I  
Sbjct: 1034 IRK 1036


>gi|326801024|ref|YP_004318843.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
 gi|326551788|gb|ADZ80173.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
          Length = 1058

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 79/578 (13%), Positives = 166/578 (28%), Gaps = 33/578 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  IG +           + ++P   P             +      D
Sbjct: 8   KRPVTAIVISVLIVLIGAIAI-----TTLPISQYPDVAPPTVTV--------TGTYTGAD 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
                   +    +   +          +      + IT++F      +     V   + 
Sbjct: 55  AATV-EQTVTTPIESQINGTPGMTYLQSNSTSDGRSSITVTFDVGTDIDIATLDVQNRVG 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L    ++  ++T       ++++     +        S  I     D +      
Sbjct: 114 IAEPALPEAVRRLGIITRKANNDILMVAGLVSPKGTHDEKFLSNYIQIYVKDALLRVAGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D  +L +L  T A +S      N    G   G +    S    
Sbjct: 174 GDVQAFG-QPFSMRVWLDADKLSRLSLTPADVSAAIQEQNLRIPGGSVGAKPQSSSQA-- 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              E  V + G  +            +    I          +      I          
Sbjct: 231 --FEFNVILDGDLIT---------PEQFENIIVKTNADGSLVYLRDVARIELGEFAYSTS 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +   V +  + +     +   T E        L+         ++    +     S S
Sbjct: 280 SKVNGQVASMMMINQMPGGNAVETAEGIQQALETLKKSFPDDVDYVISYETISMVKASIS 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV IV+F+ +   +  L+   +I ++++ T     LLG ++   ++   
Sbjct: 340 SVIHTLVEALVLVTIVVFVFLQSWRATLIPVLAIPVSIVGTFIFFILLGFSVNTLTMLAF 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E ++        S   +         + +    +      V + F
Sbjct: 400 VLAIGIVVDDAIVVVEAVQHYIDNEHLSAKEATQKAMKDITAPVIAIALILAAVFVPVGF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G      + FAIT+ +S+L+S F A+S+  A+   +++  K+          F+L   
Sbjct: 460 IPGMVGKLYQQFAITIAVSVLLSAFIALSLTPALCSLMLKPMKLDKDSKGLDRIFYLFNS 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
                  +             +  I L+      YG+ 
Sbjct: 520 WFHRVTQKYSRGVQWCIKKTPLVMILLICIFVGTYGLF 557



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/334 (10%), Positives = 99/334 (29%), Gaps = 11/334 (3%)

Query: 508  RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
            R  +         K+ +                               +    +    T 
Sbjct: 708  RPEIAMAYSLFNTKTPNYRVEVNREQAKKMGVPINSVYGTISAYFGSSYINDFVLYGRTF 767

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             +    D      +  + N  V  +   S      +     +N     +F +    +   
Sbjct: 768  RVVTQADTNFRKHIEDINNLYVKNTKGTSVPLGTLVDYKVVENPSIINHFNIFRAIEVSG 827

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-IVGVIISAIAMLIYI-- 684
            + A           + E+   +           +S + +  G    +I +   + +++  
Sbjct: 828  NAAPGYSSGDALNALKEVAAQTLPTGYTYSFAGLSLQELESGNKTVMIFALCIIFVFLLL 887

Query: 685  -WIRFKWYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
              +   W      + ++ + +    L    L  ++ N+ A   ++TLIG +  + +++ +
Sbjct: 888  AALYESWSVPFSILMSVPVGVFGAILALTFLPKLDNNIYAQIGLVTLIGLAAKNAILIVE 947

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              ++        +        ++   L   V TSMA  + ++P+ +    G     +   
Sbjct: 948  FAKE---RVDMGMELIAATIDAVKLRLRPIVMTSMAFILGIIPLMLSSGAGAVSRQTIGW 1004

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             +  G++ A   +IF    + + I        ++
Sbjct: 1005 TVFGGMLAATLLAIFFVPVLFVLITRLAYGKKKL 1038



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 79/203 (38%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +    + LE +KK   + V       T  +       +I   +  +++  I + +++ 
Sbjct: 302 ETAEGIQQALETLKKSFPDDVDYVISYETISMVKASISSVIHTLVEALVLVTIVVFVFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  +  + + I  T  FF L G   N   + A +  IG  V+D +VV + + 
Sbjct: 362 ---SWRATLIPVLAIPVSIVGTFIFFILLGFSVNTLTMLAFVLAIGIVVDDAIVVVEAV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
               +    +S ++   K++ +     +  ++      +P+    G V      FAI +A
Sbjct: 418 -QHYIDNEHLSAKEATQKAMKDITAPVIAIALILAAVFVPVGFIPGMVGKLYQQFAITIA 476

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             ++++A  ++ +   +   +  
Sbjct: 477 VSVLLSAFIALSLTPALCSLMLK 499


>gi|332526655|ref|ZP_08402760.1| acriflavin resistance protein [Rubrivivax benzoatilyticus JA2]
 gi|332110916|gb|EGJ11093.1| acriflavin resistance protein [Rubrivivax benzoatilyticus JA2]
          Length = 1021

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 90/691 (13%), Positives = 205/691 (29%), Gaps = 52/691 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  ++  IGL+        +  +  +P                     L   
Sbjct: 9   RRPVLATVMSLLLVLIGLVS-----FRELTVREYPKIDEPVVT---------VSTTLVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +    I     R  +++IT+ F   +  +  A +V   +  
Sbjct: 55  ASEVIESQVTKPLEDSIAGIDGVDIMTSISRTERSQITVRFKLEKDPDTAAAEVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L     + ++          V      + +    ++ +  I R    ++       
Sbjct: 115 VRGRLPDAVDEPVIAKVEADATPTVWIAYTGEGI--DPLKLTEVITRVIKPRLQTVPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP RL     T   +       N          R    +   + 
Sbjct: 173 DVQIGGDRAYSMRVWLDPDRLAAHRLTVQDVEDALRAQNLEVPAGRIESRQREFNVTART 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +    ++   +G           + +  A      
Sbjct: 233 DLNT--------------------VEQFEQVALKTVGGYTVRLRDVARVEEGAASERSRV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L             A  +          L   L+    P     +   N      S   
Sbjct: 273 RLNGVPSVSTGVIRNATANPLDVAAGVRALLPELQRELPPGVTATLANDNSVFIDRSIKA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+F+ +   +   +   +I +++I + AL++  G ++   ++  +V
Sbjct: 333 VYHTIAEAVVLVALVVFVFLRTLRASFIPLVTIPVSLIGSFALIAAAGFSINTLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +  S F +   G       +    +T       L F  
Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGLSPFQAALKGVREISFAVVAMTLTLAAVFAPLAFTP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA+T+  ++L+S F A+++   +   ++R++   +     + R        
Sbjct: 453 GRTGRLFGEFALTLAGAVLVSGFVALTLTPMLCSKLLRHETKPTRFDRWMERGLDRLSAA 512

Query: 539 AIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + +           + +       +   +        I+ +G I + V A     L  
Sbjct: 513 YSRALVASLNLRWAVVLVMLACGGASAWLFMTAKSELAPIEDRGVIIMPVRAPDGSTLEY 572

Query: 594 VRSNLESLQIGDISFQNF--------DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
               L++L     +F  F         G+ +    +      +  +    E+ +  + ++
Sbjct: 573 TARYLDALDGIAATFPEFDRRFMFVGGGQVSSASAVMRTVDWAERERTTQELAQALLPQV 632

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L  +    I  P + +    + +  V++S
Sbjct: 633 RQLPGVNVFPITPPSLGQGFRERPLNFVVVS 663



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 66/161 (40%), Gaps = 7/161 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +  +++ + + + +  +F+ +      + ++ L +   L    L G   N+ +   ++TL
Sbjct: 850  LVFVLALLFIFLVLSAQFESFIDPFVILLSVPLSMVGALLALKLSGGTLNVYSQIGLVTL 909

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G      +++ +    + +L     + R+ + ++ +  L   + T+ A  +  LP+A+ 
Sbjct: 910  VGLITKHGILIVEF---SNQLRRQGKALREAVVEAASLRLRPILMTTGAMVLGALPLALA 966

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               G          +  G+ +    +IF+   +   +   R
Sbjct: 967  SGAGAESRHQIGWVIVGGMSLGTLLTIFVVPTVYTLLARER 1007



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
              +   + T+ + +  +    A  G   N   + A++  IG  V+D +VV + +    +
Sbjct: 355 LRASFIPLVTIPVSLIGSFALIAAAGFSINTLTLLALVLAIGLVVDDAIVVLENI---FR 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                +S      K + E     V  ++       P+A   G        FA+ +A  ++
Sbjct: 412 HIEEGLSPFQAALKGVREISFAVVAMTLTLAAVFAPLAFTPGRTGRLFGEFALTLAGAVL 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           V+   ++ +   +   +     K  R
Sbjct: 472 VSGFVALTLTPMLCSKLLRHETKPTR 497


>gi|238025541|ref|YP_002909773.1| hydrophobe/amphiphile efflux family protein [Burkholderia glumae
           BGR1]
 gi|237880206|gb|ACR32538.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia glumae BGR1]
          Length = 1043

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 74/515 (14%), Positives = 146/515 (28%), Gaps = 33/515 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   GLL       PQ  + ++P   P   +            +     
Sbjct: 8   RPVFAWIVALAIVVAGLLAI-----PQLPVAQYPRLAPPRVV---------VSAIYPGAA 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V+  +    +E    L +      +     N +I ++F      +     V   L+ 
Sbjct: 54  PETVDEDVASIIEESLDGLDRLQYYETTSDSHGNLEIDVTFEPGTDADIAVVDVQNRLKQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L     +  +         ++L      +    +      + R  + +I       
Sbjct: 114 VEARLPQQVVQQGIDVYKSANTFLMLVTLASTEGGQDSTTLGDFLTRNLLREIKRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + L    DP +LR+       +       N +      G            
Sbjct: 174 AATLWDA-DVALRIWLDPMKLREFGLGVDDVIAAVGAQNATVTAGAIGDTPFEPGQQLTA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K ++S                +    +   +             I           
Sbjct: 233 SVIVKGQLS-------------TPAEFGRIVLKAQPDGSAVRLADVARIEIGRDDYSYWS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L              + +   T        A L+    P     V   +      +   
Sbjct: 280 RLNGKPAAAIGIQLGPRGNALDTSNAIRARIAALQKRLPPGAQIRVPFDSAHFVELAIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ LV    I + ++     +   G ++ + ++ G+V
Sbjct: 340 VVLTLVEAVVLVFLVMWVFLRGLRYTLVPAVVIPVTLMGAFVAMWAFGLSINVFTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +             +      R    I           V + FF
Sbjct: 400 LAIGILVDDAIVVVESVHRIMEDEGLPPREATRRAMRRIGGAIVGVTAVLTAVFVPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMI 512
               GG  R F+I M  S+ +S F A+S+  A+  
Sbjct: 460 PGGVGGIYRQFSIAMIASMAVSSFVALSLTPALCA 494



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 83/238 (34%), Gaps = 12/238 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V              +        +       G+++  +  +      + + +P 
Sbjct: 260 VRLADVARIEIGRDDYSYWSRLNGKPAAAIGIQLGPRGNALDTSNAIRARIAALQKRLPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I + ++ ++ + + + + +W+  +   + L     + + +   
Sbjct: 320 GAQIRVPFDSAHFVELAIHEVVLTLVEAVVLVFLVMWVFLRGLRYTLVPAVVIPVTLMGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKS 764
                 FG+  N+  +  ++  IG  V+D +VV +   R+ +        +  R+   ++
Sbjct: 380 FVAMWAFGLSINVFTMFGLVLAIGILVDDAIVVVESVHRIME-----DEGLPPREATRRA 434

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    G  V  +       +PMA + G V      F+I M   + V++  ++ +   +
Sbjct: 435 MRRIGGAIVGVTAVLTAVFVPMAFFPGGVGGIYRQFSIAMIASMAVSSFVALSLTPAL 492



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 78/238 (32%), Gaps = 13/238 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS + +   S+    +S  N     +   R         A  ++  +      
Sbjct: 794  RSGQMVPLSAIAARHWSVGPVALSRFNGYPSLDVTGRSAPGVSSGAAMAQMERLAAALPA 853

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I         E         L+      + +S +A+ + +   ++ W   L  +T L L
Sbjct: 854  GIDFDWVDAAREQRVAARQTPLL------IGLSVLAVFMVLAALYESWIVPLAVLTILPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                 L       +  ++     ++T+IG +  + +++    R     +      R+ + 
Sbjct: 908  GAAGALAAALARDLPNDVYFKVGLITVIGLAAKNAILIVQFARD---AHRRGAPLREAVL 964

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             +        V TSMA  + V+P+ +    G     S       G++ A    +  A 
Sbjct: 965  DAAGLRFRPIVMTSMAFLLGVVPLVLATGAGAESRRSIGTGAFGGVLAATLFGLVFAP 1022


>gi|227823384|ref|YP_002827356.1| Acr/RND family efflux transmembrane transporter [Sinorhizobium
           fredii NGR234]
 gi|227342385|gb|ACP26603.1| Acr/RND family efflux transmembrane transporter [Sinorhizobium
           fredii NGR234]
          Length = 1050

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 76/661 (11%), Positives = 169/661 (25%), Gaps = 47/661 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++   G L      L Q  + +FP   P               + +    
Sbjct: 10  RPRLAMVIAVVMAIAGALA-----LSQIPIAQFPQITPPE-------------VQVTASY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+      +   +   E +   S     N    +T++FA           V  
Sbjct: 52  PGANASVLEESVGAPIEDQVNGVEDMLYMSSASSNNGTYSLTVTFAVGTDPAMAQVNVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L     +  +         ++       +     I  S        D I   
Sbjct: 112 RVALATPRLPASVTQTGVSVRARSSSMLMGVAIYSPKGTRDEIFISNFAANNIRDAIARV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P +++ L  T A ++      N        G        
Sbjct: 172 AGVGEAGIFG-PSYSMRIWMNPDQMQALGITAADLASAIQAQNAQASAGQLGSPPAASGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                     I                 +       
Sbjct: 231 QLQLTIMAQGRLATEE-------------DFANIIVRANADGAIVRLRDVARVELGAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +    A  +              L           V          
Sbjct: 278 DTTSSFNGQPSATVVVYQSADANALAVSRAVLSELDRLSRQFPEDVAYAVVFDTTAFITE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T AI   LV+ V ++ +   +  ++   +I +++I   A+L LLG +    ++
Sbjct: 338 TIKEIGITLAITFALVVAVTYLFLQDWRATVIPTLTIPVSLIGGFAVLYLLGYSANTITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L I L VD  I+V E ++   + +   V  +     ++    I  + +      V 
Sbjct: 398 FAVILAISLVVDDAIIVVENVQRVMSEEGLDVRDATQRTMTQVTGPIVATTLVLAALFVP 457

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINP 527
           + F     G   R FA+T+ ++I  S   A+++  A+ + +       R       +   
Sbjct: 458 IAFVPGITGQLYRQFAVTILVTISFSTINALTLSPALCVLMLERPRQNRRGIFGRFNRGL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   D +     R     V +  +                 ++ +G + + V    
Sbjct: 518 DVSRQWYLDMLDRMSRRLVIASVLLLAILGGVYGLFRTLPTGFVPMEDQGYLFINVQLPN 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L   +  L+++                        G S A   +  +   +      
Sbjct: 578 AASLERTQQALDAVVGILRRAPGVANSVGIAGNSMVGGGGSNAGMVIAALNPWEERSSAD 637

Query: 648 L 648
            
Sbjct: 638 E 638



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 89/288 (30%), Gaps = 11/288 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S   +      L           +    + V AN    +  +R                 
Sbjct: 223 SPPAASGQQLQLTIMAQGRLATEEDFANIIVRANADGAIVRLRDVARVELGAQSYDTTSS 282

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG--- 669
                   +            V   V  ++  +           V    +  +       
Sbjct: 283 FNGQPSATVVVYQSADANALAVSRAVLSELDRLSRQFPEDVAYAVVFDTTAFITETIKEI 342

Query: 670 --IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              + +  + +  + Y++++  W   +    T+ + +        L G   N   + AV+
Sbjct: 343 GITLAITFALVVAVTYLFLQ-DWRATVIPTLTIPVSLIGGFAVLYLLGYSANTITLFAVI 401

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             I   V+D ++V + +     +    +  RD   +++ +  G  V T++      +P+A
Sbjct: 402 LAISLVVDDAIIVVENV--QRVMSEEGLDVRDATQRTMTQVTGPIVATTLVLAALFVPIA 459

Query: 788 VWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G +   FA+ +   I  +  +++ ++  + + + +   +N R
Sbjct: 460 FVPGITGQLYRQFAVTILVTISFSTINALTLSPALCVLMLERPRQNRR 507



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 63/164 (38%), Gaps = 10/164 (6%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTL 708
               E  G  +         V ++I    +  Y+++      W   L  + ++ + +   L
Sbjct: 851  FGFEWTGLALQERQAGNQTVAILI-MGIIFTYLFLVGQYESWSVPLAVMLSVSVAVLGAL 909

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                L  I+ N+     ++ LIG +  + +++ +  ++        ++ R+       + 
Sbjct: 910  AALMLASIDVNIYVQIGLVLLIGLAAKNAILIVEFAKE---RREEGMTTREAAAAGTAQR 966

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
                + T++A+ + V+P+ +    G     +  + +  G++V  
Sbjct: 967  FRPVLMTAVASILGVVPLVIATGAGAGSRRAIGMTVFGGLLVGT 1010


>gi|218782661|ref|YP_002433979.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764045|gb|ACL06511.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1064

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 67/656 (10%), Positives = 167/656 (25%), Gaps = 44/656 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           + ++P   P               + +E   
Sbjct: 9   RPVFAWVIAIIIMLAGGLAI-----YNLPISQYPPIAPP-------------SIAIEAMY 50

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S      +I ++F      +    KV  
Sbjct: 51  PGASAETVENTVVQIIEQKMVGFENLLYMSAESSSSGMGRIEMTFVPGSDPDMAWAKVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    +   +  +      +++     +       + +  +       +   
Sbjct: 111 KLQLAMPSLPEVVQSQGVSVSKSTRNYLIIVGIISEDGSMDYSDLADYVNSNLEKVLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P +L     T   +       N       FG +   +  
Sbjct: 171 PGVGEVEAFSPQ-YAMRIWFNPDKLNSYNLTVQDVIAALRTYNVEVSAGAFGAQPAVEGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +       +                      
Sbjct: 230 KMNASIVVQNLL-------------QTPAQFAAIPIRNNPDGSVIKVGDVARTELGSESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +              A  +   T +      A +     P                
Sbjct: 277 AVKPLFNGQPSAALAIRQAAGANALETAQNVRDKLAEMEKYFPPGLKVTYPYDTTPFVRV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +V+ + +   +  L+   ++ + ++ T  +L L G ++ + ++
Sbjct: 337 AIHEVVKTLFEAVFLVFLVMLLFLGSFRATLIPTIAVPVVLLGTFGVLGLFGFSINMLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +         S +    +        
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMQEEGLPPKEATRKSMHEITSALIGIGLVLSAVFGP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  ++L+S+  A+ +   +   +++            +    
Sbjct: 457 MAFFGGSTGVIYRQFSLTIISAMLLSVIVALILTPVLCASLLKEGHQTRKGKRTFTPLRA 516

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             D     F   R   + +        +  +       GI F        +    +    
Sbjct: 517 FVDLFNRGFNWVRDIYLMMVGGILRFKVVFMLCF---IGIVFAFVHFFQQMPTAYLPNED 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               L  +Q+   S      E    ++  +   +  A   VL +       +   +
Sbjct: 574 QGIVLAMVQLPTGSTMEQTDEILAEIQDYFLEQEKEAVKSVLTLSGMSFAGMGQNN 629



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 6/135 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + +  T G   LFG   N+  + A++  IG  V+D +VV + +    
Sbjct: 362 SFRATLIPTIAVPVVLLGTFGVLGLFGFSINMLTMFAMVLAIGLLVDDAIVVVENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +  ++   KS++E     +   +       PMA +GGS       F++ +   +
Sbjct: 420 IMQEEGLPPKEATRKSMHEITSALIGIGLVLSAVFGPMAFFGGSTGVIYRQFSLTIISAM 479

Query: 806 VVAASSSIFIAAPIL 820
           +++   ++ I  P+L
Sbjct: 480 LLSVIVAL-ILTPVL 493



 Score = 37.7 bits (85), Expect = 7.7,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 78/261 (29%), Gaps = 27/261 (10%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   V  S V +   +     +   N     NF            A   + E++ K   
Sbjct: 798  NSGTMVPYSSVATGRWTEGAQQLQRYNGFPSINFQGEAAPGRSSGEAMQAMEEIMDKLPQ 857

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                  T  + +         L+         S +A+ + +   ++ W   +  +  L  
Sbjct: 858  GFGFDWTGISYQERMASSQTGLLY------AFSILAIFLCLAALYESWPIPISILLAL-- 909

Query: 703  DITKTLGFFA--LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +    G FA  L G+  ++     +LT +G +  + +++    +         +     
Sbjct: 910  PLGAIGGVFATTLRGLPNDVYFQIGLLTTLGLTTKNAILIVQFAK---AKREEGMDLVSA 966

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA-----SSS 812
              +         + TS+A    VLP+ +    G     +    +  G+V         + 
Sbjct: 967  TLEGAKLRFRPIIMTSLAFGFGVLPLFLANGAGAGAQIAIGTSVLGGMVTGTVLVTLFTP 1026

Query: 813  IFIAAPILLFIYDWRAKNARI 833
            +F      + I        ++
Sbjct: 1027 LF-----YVIIARLFIPRKKL 1042


>gi|148652747|ref|YP_001279840.1| preprotein translocase subunit SecF [Psychrobacter sp. PRwf-1]
 gi|148571831|gb|ABQ93890.1| protein translocase subunit secF [Psychrobacter sp. PRwf-1]
          Length = 398

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 92/269 (34%), Positives = 141/269 (52%), Gaps = 4/269 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM+        SIL  + SI  LF +GLN G+DF GG+   V    PV+ + V  +LE
Sbjct: 89  IPFMKLEKPMAIFSILMVLISIGALFINGLNLGLDFTGGVSADVKYENPVEQTEVIQSLE 148

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                D   Q   G    LVRL  Q   S     + E + K +      + I N  I+G 
Sbjct: 149 KSGFDDAVVQYLGGTTELLVRLPPQ---SDNVAGLNESLGKALDLPGNNAEISNVNIIGS 205

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  E+    ++ ++ +   M++Y+ +RF++  A+GA+  L+ D   TLG FALF   F+
Sbjct: 206 QVGSEVYLSSLIAIVTALGMMMLYVAVRFQFKLAVGALLALVHDAVVTLGVFALFQFPFD 265

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AA+L LIGYS+ND +VV+DR+R+N +      S R +ID S+ ETL R++ T    
Sbjct: 266 LTVLAAILALIGYSLNDTIVVFDRIRENFRR-VRDASPRQIIDLSLTETLRRTIMTVSTV 324

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            + VL M   GG+ +  F+     G++  
Sbjct: 325 LVVVLAMLFLGGAGLYWFSFAFFIGLIAG 353


>gi|330013120|ref|ZP_08307574.1| multidrug efflux pump BpeF [Klebsiella sp. MS 92-3]
 gi|328533600|gb|EGF60317.1| multidrug efflux pump BpeF [Klebsiella sp. MS 92-3]
          Length = 1046

 Score =  177 bits (449), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/550 (11%), Positives = 146/550 (26%), Gaps = 35/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPNGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPQESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV +   + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVGLGGILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++    K      L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAALLLKPHGAKKDLPTRLIDRLFGWI 520

Query: 537 CIAIQFMRAR 546
                    R
Sbjct: 521 FRPFNRFFLR 530



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 80/232 (34%), Gaps = 17/232 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L +     I      G     +    +   +   TR  E ++    
Sbjct: 270 RIEMGSGSYALRSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAP 329

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
               +    +   V   +   +       V++    +L        W  ++  +  + + 
Sbjct: 330 YDPTVFVRDSIRAVVQTLLEAV-------VLVGLGGIL----FLQTWRASIIPLIAVPVS 378

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T     L G   N  ++  ++  IG  V+D +VV + + +N++     ++      +
Sbjct: 379 VVGTFSILYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIEE---GLAPLAAAHQ 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
           ++ E  G  +  ++      +PMA   G        FA+ +A   V++A +S
Sbjct: 436 AMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTVISAINS 487



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     +   +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRRKPV 1044


>gi|260886616|ref|ZP_05897879.1| multidrug efflux RND transporter MexF [Selenomonas sputigena ATCC
           35185]
 gi|330839550|ref|YP_004414130.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Selenomonas sputigena ATCC 35185]
 gi|260863759|gb|EEX78259.1| multidrug efflux RND transporter MexF [Selenomonas sputigena ATCC
           35185]
 gi|329747314|gb|AEC00671.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Selenomonas sputigena ATCC 35185]
          Length = 1065

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 178/672 (26%), Gaps = 34/672 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   G++  L     Q  + ++P   P                +     
Sbjct: 8   RPIFAIVIALLIVICGVIAGL-----QLPIAQYPQISPPTVT---------VGTMYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              VN  +    ++  +  +       +        +T++F      +  + KV   +  
Sbjct: 54  ASVVNQTVAQIIEDQVNGTQGMDYMSSNSDDTGRYSLTVTFETGSDGDMDSVKVQNNVAV 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D K   + T        ++     D  +  +           +D+I       
Sbjct: 114 ATASLPDDVKTVGVTTKKASNDMAMMVSIYSDSDLYDSTFLKNYATIYLLDKIKRVHGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P +L +L  T + ++      N        G   + +    Q 
Sbjct: 174 DVQIFGS-DYSMRVWLNPDKLAELGLTVSDVAAAIKEQNMQAPAGTIGAMPVPEMQEKQA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +    +                 +    I                 +           
Sbjct: 233 TGKVNGRL-------------VTPEQFGNIIVRAAGDGSFVRLKDVARVETGAKTNNIIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   T+     +    R    P         +      S + 
Sbjct: 280 KANGHPALAMGVQLTSDANAMQTVAAVKQVIDEARPNFPPEMRCDTIVDSTNYIRESITE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  L+   ++ +++I T      L  ++   ++  +V
Sbjct: 340 VVHTFVEALLLVVLVIFVFLQSWRATLIPLLAVPVSLIGTFIAFIALDFSINTLTLFAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     +  +V  + +         +           V + F G
Sbjct: 400 LAIGLVVDDAIVVIENVEHHMEEGLNVIDATERAMDEVQGPVVAIAFVLAAVFVPVAFLG 459

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA+T+ +S+ IS F A+S+  A+   I++       D              
Sbjct: 460 GMMGVLYKQFALTIAISMAISAFVALSLTPALCALILKPHAKDKEDKK--GILDRFFAGF 517

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              F + +   +GI       S   +    L   +       +        D      ++
Sbjct: 518 NTWFDKTKSGYLGIVAKMIRKSRFAILFMVLVCALTAIVYKNMPSTFVPDEDQGFYIVSV 577

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                   +      +K      +    D V      +++            +       
Sbjct: 578 SLPPGTSTNVTQESIDKVQASLKELPGVDMVMAINGFDILSFGAKSSAGTIFVGLDPWSE 637

Query: 659 PKISRELIRKGI 670
                  I   I
Sbjct: 638 RTTVETNINMLI 649



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 6/146 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T   F       N   + A++  IG  V+D +VV + +    
Sbjct: 361 SWRATLIPLLAVPVSLIGTFIAFIALDFSINTLTLFAMVLAIGLVVDDAIVVIENV---E 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGI 805
                 ++  D  +++++E  G  V  +       +P+A  GG   V+   FA+ +A  +
Sbjct: 418 HHMEEGLNVIDATERAMDEVQGPVVAIAFVLAAVFVPVAFLGGMMGVLYKQFALTIAISM 477

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
            ++A  ++ +   +   I    AK+ 
Sbjct: 478 AISAFVALSLTPALCALILKPHAKDK 503



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 49/530 (9%), Positives = 136/530 (25%), Gaps = 36/530 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R + + ++   ++C +  +               P       I       G S  V +  
Sbjct: 537  RKSRFAILFMVLVCALTAI-----VYKNMPSTFVPDEDQGFYIVSVSLPPGTSTNVTQES 591

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D       ++   ++   +    I  F  +     I +       +  +   + + +  
Sbjct: 592  IDKVQASLKELPGVDMVMAINGFDILSFGAKSSAGTIFVGLDPWSERTTVETNINMLIGK 651

Query: 122  VNSKLNVDPKKNLLVTTTEKEIS----IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                      ++ ++      +     +      +  +  H  E+   I +Q +  +   
Sbjct: 652  TFGIGAKVAPESQVIAFNMPALPGLGMVGGWTMQLQDMSGHTDEELDAITKQIVQAMNQR 711

Query: 178  ESTIQRLGSHRIL-IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                    ++ I       E D  +++QL    + +     +                  
Sbjct: 712  PELQGVRTTYSIDSPVYDFEIDREKVKQLGVQMSDVFTALQVNF---------------- 755

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
             G Q    ++   +   +  A   +  +             G     +          A 
Sbjct: 756  GGYQVNDFNQFGRTYKVMMQADMPYRSEVEAARFIFVKSNAGTMVPLDTLLKPKRGTGAP 815

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
            ++        V  Q   +               +        ++       EE+  G+  
Sbjct: 816  IISRFNAARAVQIQGNAASGYSSGDAMRAAEEVVSEVAPAGFNIEWSGQSREEKTAGSST 875

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF--SIFLNVILTLALLSLLGAT--- 411
                        +    L   + +       +      ++    +L +  + L       
Sbjct: 876  LRVLALCFVFVFLCLAALYESWSVPFAVLLTVPTGILGALLSEYVLGMGGMILFHHMNAG 935

Query: 412  --LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
               ++    GI++ IGLA  + IL+ E  +    +      +           I  ++  
Sbjct: 936  LQDSIYMQIGIIMIIGLAAKNAILIVEFAKVRVDRGMEPVKAAIEAAGLRLRPILMTSFA 995

Query: 470  ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
             +I  + L      G  A  G  + +   +L +    + ++    + +  
Sbjct: 996  FIIGCLPLALATGAGASARNGMGVAVVGGMLFATILGVFLIPVFYVIVAW 1045


>gi|157164627|ref|YP_001467050.1| preprotein translocase subunit SecD [Campylobacter concisus 13826]
          Length = 510

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 166/534 (31%), Positives = 278/534 (52%), Gaps = 41/534 (7%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
              G   ++P+F                +ISLGLDL+GG H++L V+ ++ ++  ++  +
Sbjct: 1   MVFGFGFSVPSFFQTQSGA---------KISLGLDLQGGLHMLLGVETNEAIHSKIKSIA 51

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRF---KENIADKVTLFLQGVNSKLNVDPK 131
             +  + KKE + +   +  ++ +  +  DS      +    ++                
Sbjct: 52  GSINYYAKKEDVLIDKFKIKEDSVDFALLDSDEAPKVDKALAEIKG-------------- 97

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             L +        I L++      I +AI Q++E IR R+DQ G++E T+ R G   IL+
Sbjct: 98  --LDIKKDGLNYHITLTEQERIDTIEYAISQAVETIRNRLDQFGLAEPTVARQGKDNILV 155

Query: 192 QLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD----------SDG 238
           +LPG +   D  R R L+   A +    V      +                     +D 
Sbjct: 156 ELPGIKTEEDEQRARDLIAKAAHLQLMAVDDKRQDQANTMSEAEAESYGDVIFKDAKNDR 215

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            +Y+V++   + G  L  A   F  + + P+++ + +  GAR F + T  N+GK LA+VL
Sbjct: 216 VKYVVKNIPVLDGSMLTDAKVAFSQQNNLPIINFTLNSEGARIFGDFTGANVGKRLAIVL 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG+V +APVIN+ I  G  QISG FT++ A  +A  LR+G+L   + ++E+R+VG  LG 
Sbjct: 276 DGKVYSAPVINERIGGGSGQISGGFTLDEAHDVAIALRSGALLAPVKMLEKRSVGPSLGQ 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           +SI +   A+ AG +L+VLFM+V YG  G+ A+ ++  +V++ +A+++L GATLTLP +A
Sbjct: 336 ESINQSMVALAAGSILVVLFMLVYYGISGIFANIALVADVVILVAVMALFGATLTLPGMA 395

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GIVL IG+AVD+N+++NERIRE  R+  ++  ++  G+  A S I DSN+T +I   VL+
Sbjct: 396 GIVLTIGMAVDANVIINERIRELLREGVAIRTAVQKGYEHAMSAIIDSNLTTIITVAVLY 455

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +G G V+GFA+TM + I+ SM TAI     M   ++   +             
Sbjct: 456 AYGTGPVKGFAVTMAIGIMASMLTAILGTHGMFDAVMDKIEKSGNTRLWFGYKR 509



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 80/158 (50%), Gaps = 4/158 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + +E I + +V +   +I +++++ + +     + A   L+ D+   +   ALFG
Sbjct: 328 SVGPSLGQESINQSMVALAAGSILVVLFMLVYYGIS-GIFANIALVADVVILVAVMALFG 386

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  V++ +R+R+ ++     ++ R  + K     +   + +
Sbjct: 387 ATLTLPGMAGIVLTIGMAVDANVIINERIRELLRE---GVAIRTAVQKGYEHAMSAIIDS 443

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
           ++   I+V  +  +G   +  FA+ MA GI+ +  ++I
Sbjct: 444 NLTTIITVAVLYAYGTGPVKGFAVTMAIGIMASMLTAI 481


>gi|92115354|ref|YP_575282.1| hydrophobe/amphiphile efflux-1 HAE1 [Chromohalobacter salexigens
           DSM 3043]
 gi|91798444|gb|ABE60583.1| Hydrophobe/amphiphile efflux-1 HAE1 [Chromohalobacter salexigens
           DSM 3043]
          Length = 1067

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 149/547 (27%), Gaps = 36/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G +       P   +  +P  +P + +                  
Sbjct: 10  RPIFAAVLSIIIFAVGAISI-----PNLPVGEYPEVVPPSVL---------VRTTYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +  +      + +   T++F      E    +V   +
Sbjct: 56  PKEIAETVATPLEEAITGV--EDMMYYKSVAGSDGVLQMTITFQPGTDPEQATVRVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L    ++  + T  +    +++            +           DQ+     
Sbjct: 114 SQALARLPEAVRRQGVTTQKQSPTFLMVVHLVSPDDSYDTLYLRNYARLHVRDQLAKISG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +          +    DP R+     T   +       N        G   + DSD  
Sbjct: 174 VGEAQLFGGGDYAMRAWLDPDRIASHGLTAGDVVDAMREQNVQVSAGQIGAEPMPDSDFL 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             +       +                +    +                 +         
Sbjct: 234 TLINAKGRLST--------------EQEFGNIVLKVGEDGEILRLGDVARLEMGAGDYTL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +        L     P                S 
Sbjct: 280 RSRLDGKEAVAIGIFQSPGANALQIRDQVVRTMDELATRFPPGVEYRTVYDTTLFVSDSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  L+   ++ ++V+ T A+L LLG ++   ++ G
Sbjct: 340 RSVIQTLLEAILLVVLVVTLFLQTWRASLIPLLAVPVSVVGTFAVLLLLGYSINTLTLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 400 LVLAIGIVVDDAIVVVENVERNIGQGLAPRAAAHQAMREVSGPIVAIGLVLCAVFVPMAF 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R FA+T+ +S +IS   ++++  A+   ++R        +  +        
Sbjct: 460 LSGVTGQFYRQFAVTIAISTVISTINSLTLSPALAAMLLRPHDAPKDRLTRVIDILFGWL 519

Query: 537 CIAIQFM 543
                  
Sbjct: 520 FRPFNRF 526



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ LIG +  + +++ +  R+  
Sbjct: 899  SWILPLAVILIVPMCLLSALVGVRLSGGDTNVFVQVGLVVLIGLACKNAILIVEFARE-- 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L        +   ++    L   + TS+    +V+P+A+    G  V  +  I +  G+
Sbjct: 957  -LEFQGRGVVEAALEACRLRLRPIIMTSITFTAAVIPLALGHGAGAEVRQALGIAVFAGM 1015

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      +F+     + +  
Sbjct: 1016 LGVTLFGLFLTPVFYVALRK 1035



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  +L  +  + + +  T     L G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 364 WRASLIPLLAVPVSVVGTFAVLLLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNI- 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAVWG--GSVIGSFAIPMAFGI 805
                ++ R    +++ E  G  V   +   A    +   + G  G     FA+ +A   
Sbjct: 423 --GQGLAPRAAAHQAMREVSGPIVAIGLVLCAVFVPMA-FLSGVTGQFYRQFAVTIAIST 479

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++  +S+ ++  +   +  
Sbjct: 480 VISTINSLTLSPALAAMLLR 499


>gi|332295950|ref|YP_004437873.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Thermodesulfobium narugense DSM 14796]
 gi|332179053|gb|AEE14742.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Thermodesulfobium narugense DSM 14796]
          Length = 1040

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/558 (11%), Positives = 161/558 (28%), Gaps = 41/558 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  + +++  +I  +GLL  +        +  +P   P              +++    
Sbjct: 7   KNPIFAIVVSLIIVLVGLLAMV-----NLPIAVYPQITPPQ-----------VNVI--AS 48

Query: 62  EDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   ++       ++  + ++     + +     +  + + F   +  +    +  
Sbjct: 49  YPAANAQTVEQTVAQQMEDQVNGVEGMVSMLSTSTDAGSYTLQVQFELGKDPDIATVQTQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +   +  L  +  +  +        + ++      +    +   +       + Q+  
Sbjct: 109 NRVGQASPLLPPEVVQYGINVMKVTPQNALVFSLYSPKGTYDSTFLANYGNINIVQQLQR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   Q +             +P ++ QL  TT  +       N        G   +   
Sbjct: 169 VKGVGQVMMYGSPFGM-RIWLNPEKMAQLGITTTDVYNAIKEQNVQAASGTIGQMPIPAD 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY+   K  +S                +    I                 +      
Sbjct: 228 QTFQYITRVKGRLS-------------TPQEFENIIVRANPDGSIVRLGDIARVNLGGRF 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
            +    +                    T++    +         P     +   N     
Sbjct: 275 YVYNSTMNGYNAASFGVQLTPDADALKTVDQCKAIIQNASKNFPPDMKYEIIVDNTLFIR 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   K  L+   ++ +++I T +   + G ++   +
Sbjct: 335 ESLKEVLITLFEALLLVMVVIFVFLHSWKATLIPMLAVPVSLIGTFSTFLVFGFSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +    R +  + F +         + I           +
Sbjct: 395 LFAMVLAIGLVVDDAIVVIEAVEHHIRYDNMTPFEAAQRAMKEVSAAIVAIAFVLASVFI 454

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      + FA+T+ +S+++S+  A+S+   +   I+               F 
Sbjct: 455 PVAFFGGTMGVLYKQFALTITVSMILSVVVALSLTPTLCARILTPYDPNKHKGLLAKFFD 514

Query: 533 LIPDCIAIQFMRARFWGV 550
              +       +      
Sbjct: 515 KFNEVFEKIISKYSQIVY 532



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  +       +    +                   D++      + + +  ++  
Sbjct: 258 SIVRLGDIARVNLGGRFYVYNSTMNGYNAASFGVQLTPDADALKTVDQCKAIIQNASKNF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDIT 705
           P        +      RE +++ ++ +  + + +++ I      W   L  +  + + + 
Sbjct: 318 PPDMKYEIIVDNTLFIRESLKEVLITLFEALLLVMVVIFVFLHSWKATLIPMLAVPVSLI 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T   F +FG   N   + A++  IG  V+D +VV + +     +   +++  +   +++
Sbjct: 378 GTFSTFLVFGFSINTLTLFAMVLAIGLVVDDAIVVIEAV--EHHIRYDNMTPFEAAQRAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            E     V  +       +P+A +GG++      FA+ +   ++++   ++ +   +
Sbjct: 436 KEVSAAIVAIAFVLASVFIPVAFFGGTMGVLYKQFALTITVSMILSVVVALSLTPTL 492



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 75/212 (35%), Gaps = 14/212 (6%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VIISAIAML 681
             Q G + A         + + E+               +S E  + G    ++ +   + 
Sbjct: 825  IQIGGNPAPGYSSGQAMQALVEVAHKVLPPTFSYDWADLSLEEQKSGQKAPILFALSLIF 884

Query: 682  IYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
             ++    +   W+  +  I ++   +     F  +  +  N+     ++ LIG +  + +
Sbjct: 885  AFLCLAALYESWFVPISVILSVPTAMFGATFFQYIRHLNNNVYMQIGLVMLIGLAAKNAI 944

Query: 739  VV--YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
            ++  + R+R+        +S  + I ++    L   + TS A     LP+A+    G   
Sbjct: 945  LIIQFSRLREEA-----GMSQIEAIVEAAKVRLRPILMTSFAFIFGCLPLAIASGAGSGA 999

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              +    +  G++      +FI   + + +  
Sbjct: 1000 RIAMGTSVVGGMLTGTFIGVFIIPVLYIAVEK 1031


>gi|134302105|ref|YP_001122074.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134049882|gb|ABO46953.1| protein-export membrane protein SecD [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 645

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 163/542 (30%), Positives = 280/542 (51%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D    ++  L  Y   + S
Sbjct: 107 YIIAMNMLSNSP--NWLSALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNYLSIILS 164

Query: 80  FLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
             K   I + S  +                  ++++ A+S   + +   ++         
Sbjct: 165 AAKDNSINISSSTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLST-------D 217

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 218 FIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEASVAQAG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V    +       G +     +G      
Sbjct: 278 DNRVVIEIPGLQDATQAKQILGGTSTASFYLVNTVADRLAAEEQGYKVYSLDNGRGYQSY 337

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 338 YSLKGTAVAGGADIIGASPSIDRQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 397

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 398 TTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 457

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ +N+IL 
Sbjct: 458 VPVHIVQEQQIGPSLGKDNIGKGMLSIVIALIAVVVFILVYYRVFGIIANIALVMNLILI 517

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 518 VAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 577

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 578 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYSKRKK 637

Query: 521 KS 522
             
Sbjct: 638 LE 639



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYSKRKKLEKI 641



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  +I  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIILALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|297195500|ref|ZP_06912898.1| protein-export membrane protein SecF [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197722115|gb|EDY66023.1| protein-export membrane protein SecF [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 366

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 83/317 (26%), Positives = 146/317 (46%), Gaps = 14/317 (4%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L    +   F+  R    G+SIL +I +I  L   GLN GI+FKGG     
Sbjct: 2   SRLGNLGARLYQGEVGYDFVGKRKVWYGVSILITITAIVALAVQGLNMGIEFKGGAVFTT 61

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V ++      E +       Q         +R+Q    D+    RV   + K + 
Sbjct: 62  P-KSEVGVTRATEVAEEISDHIPIVQELGTGG---LRIQISGVDTAEADRVQAELAKALN 117

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                      ++VGP    ++  K   G+ +  + +++Y+ I F+W  A+ A+  LI D
Sbjct: 118 IEADKINA---DLVGPSWGEQIANKAWTGLGVFMLLVVVYLAIAFEWRMAVAALVALIHD 174

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLI 761
           IT T+G ++L G E  +  V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ 
Sbjct: 175 ITITVGIYSLVGFEVTVGTVIGLLTILGYSLYDTVVVFDSLKEGQKDITKQTRFTYSEIA 234

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIA 816
           ++SIN TL RS+ T++ A + V  +   GG      ++   ++ +  G+   A SSIFIA
Sbjct: 235 NRSINSTLVRSINTTVVALLPVAGLLFIGGGFLGAGMLNDISLSLFVGLAAGAYSSIFIA 294

Query: 817 APILLFIYDWRAKNARI 833
            P++  + +   +   +
Sbjct: 295 TPLVADLKERDPQMKAL 311


>gi|294651160|ref|ZP_06728494.1| multidrug resistance family protein [Acinetobacter haemolyticus
           ATCC 19194]
 gi|292822956|gb|EFF81825.1| multidrug resistance family protein [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 1033

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 84/690 (12%), Positives = 201/690 (29%), Gaps = 46/690 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  +GLL  L        ++R+P   P               + +    
Sbjct: 9   RPIFAGVLAIIVMAVGLLAVL-----NLPVERYPDIAPP-------------RITVATSY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   +K           S     ++I+L FA     +    +V  
Sbjct: 51  SGADAQAVEDSVTQVLEQQIKGIDHLLYFSSSSDASGNSRISLFFAQGTDPDQAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + G  ++L  D ++  +        S ++         S  I+ S  +       +   
Sbjct: 111 AINGAINRLPEDVQRQGVTVRKSLSDSFMVIGLADSSGRSTNIDISDYLTNHFELNLSRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP +L+Q   + +++       N        G     +  
Sbjct: 171 EGVGEISVFGSQ-YAMRIWLDPKKLQQYQLSVSEVRTALESQNAQVAAGAIGQLPSTEDQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     +                 +    I          +      I       
Sbjct: 230 YLNARVTSGSLL-------------QTPEQFEQIIIKAHGDGSLVYLKDIARIEVGAENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +    S     +   T +        ++       + +    +      
Sbjct: 277 QVFNRLNGYPASGLSVSLAVGANVMQTADLIYQEVERIKKDLPEGYIVVYPRDDTPFVKE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV++V+F+ +   +  L+   ++ + ++ T A+L++LG ++   ++
Sbjct: 337 SMSQVLATLIEAIILVVLVMFLFLQNWRATLIPAVTVPVVILGTFAVLAVLGMSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     + +     +           +    +      + 
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMHEQKLDAKQASIQSMQEISGALVGITLVLTAVFIP 456

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPL 528
           + FF    G   R F+IT+  ++ +S+  A+ +  A+   +++ +  K     S +    
Sbjct: 457 MSFFTGATGIIYRQFSITLVAAMSLSLLVALILTPALCAILLKQQHQKAKWAQSFERGLD 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                                V   +L S  +             + +G + +       
Sbjct: 517 RVRAAYLALAKKAIQVKSVAIVSFIVLISAFAWVYRELPTSFLPQEDQGLLGVQFRLAEG 576

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             +S  +   + +    +S +  +     ++  +   G      +    +K         
Sbjct: 577 TPMSQTQLVGQQISDYFLSEEKDNLNGIMVIHGRNFSGTGQNLGQAFVSLKHWDERQGSE 636

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q       K   +  +  I+ V+ + I
Sbjct: 637 NSAQAIRARAMKHFAQNNQARIMVVMPAVI 666



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 86/210 (40%), Gaps = 8/210 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +    + +E +KK + E   +   ++      +   +++   I  +I+  + M +++ 
Sbjct: 302 QTADLIYQEVERIKKDLPEGYIVVYPRDDTPFVKESMSQVLATLIEAIILVVLVMFLFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L    T+ + I  T    A+ G+  N   + A++  IG  V+D +VV + + 
Sbjct: 362 ---NWRATLIPAVTVPVVILGTFAVLAVLGMSINTLTLFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               ++   +  +    +S+ E  G  V  ++      +PM+ + G+       F+I + 
Sbjct: 418 -ERIMHEQKLDAKQASIQSMQEISGALVGITLVLTAVFIPMSFFTGATGIIYRQFSITLV 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             + ++   ++ +   +   +   + + A+
Sbjct: 477 AAMSLSLLVALILTPALCAILLKQQHQKAK 506



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 8/203 (3%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
              DS       + ++        +  I           ++   + I   +IS   + + +
Sbjct: 822  EADSANGFSSGQGMQALTELANNMPGIDLAWSGLSYQEQQSSNQAIWLYVISIAFIFLCL 881

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L I  T+ F   FG   ++    A+LT IG S  + +++ + 
Sbjct: 882  AALYESWSIPSVVMAAIPLGIGGTILFSYCFGFANDIYFQIALLTTIGLSCKNAILMVEF 941

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
                  L     S  D   ++    L   + TS+A    V+P+      G     +    
Sbjct: 942  A---ASLQQQGKSLLDSALRAAGLRLRPILMTSIAFGAGVIPLMFSTGAGALSRQAIGYS 998

Query: 801  MAFGIVVAASSSIFIAAPILLFI 823
            +  G+V      + I  P++  +
Sbjct: 999  VFGGVVFGTIL-VLIFIPLMYVL 1020


>gi|294810154|ref|ZP_06768822.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294442618|gb|EFG11417.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 855

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 96/698 (13%), Positives = 206/698 (29%), Gaps = 56/698 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++           ++++P   P               + +    
Sbjct: 9   RPVFSGVISVVIVLLGVIAMF-----SLPVEQYPDIAPPT-------------INVWASY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +Q      L   +   E +   +          I + F      +  A  V  
Sbjct: 51  PGANAETVQKAVIVPLEEAINGVEDMTYMTSTASNTGDASINIYFKQGANADMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  +  K  + T  ++   ++                +  +      ++   
Sbjct: 111 RVNAALSQLPAEATKTGVTTEKQQNAELLTFALYSPDDRFDQTFLNNYMKINVEPRLKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P R+ Q       +S      N       FG        
Sbjct: 171 SGVGKAQLFGS-NYSMRLWLKPDRMAQYGLIPDDISAVLARQNIEAATGSFGANHPT--- 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N+Y ++ +  +SG               +    +     G          ++       
Sbjct: 227 ANEYTMKYRGRLSGAD-------------EFGELVVKSLPGGNVLRLKEVADVELGDEYY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        + + KA  + + TI     +   L          +V          
Sbjct: 274 NYSSQVNGHPAAMMMINQKAGSNASSTINEIHEVLHELDRDLPEGAEFVVLTDTNKFLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   K  L+   SIF+++I T A++S++G ++ L ++
Sbjct: 334 SIRSVIRTLLEAILLVIVVVYVFLQDIKSTLIPAISIFVSIIGTFAVMSMIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG  VD  I+V E ++ +  +   S   + D       S I  S I  +     
Sbjct: 394 FALVLAIGTVVDDAIVVVEAVQAKFDEGYQSAVLAADDAMKDVSSAILTSTIIFMAVFFP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------------MK 521
           +   GG +      F ITM +++ IS   A ++  A+   +++                 
Sbjct: 454 VAMMGGTSGAFYAQFGITMAVAVGISAINAFTLSPALCALLLKPYIDEHGNTKDNFAARF 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
               N +           + F+  R W +  SI  S   + LL        I  +    +
Sbjct: 514 RKAFNAVFYRLSRRYVRGVMFILHRRWLMWSSIAVSFVLLVLLVNATKTGLIPEEDTGTV 573

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V  N     S+ ++     +I        + E N  V      G   +Q      +K  
Sbjct: 574 MVSMNTKPGTSMAQTVKVMERINSRLDSIGEIEYNGAVAGFSFSGSGPSQAMYFVTLKDW 633

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                   ++ +        + ++    +  +    IA
Sbjct: 634 EQREGEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIA 671



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 118/362 (32%), Gaps = 11/362 (3%)

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + T  L+       + F        +      IS V    +F   Y     +  + ++++
Sbjct: 138 LLTFALYSPDDRFDQTFLNNYMKINVEPRLKRISGVGKAQLFGSNYSMRLWLKPDRMAQY 197

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIPD I+    R        S   +  +                   +L V +    ++
Sbjct: 198 GLIPDDISAVLARQNIEAATGSFGANHPTANEYTMKYRGRLSGADEFGELVVKSLPGGNV 257

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             ++   +     +    +     +    +          +  +  + + + E+      
Sbjct: 258 LRLKEVADVELGDEYYNYSSQVNGHPAAMMMINQKAGSNASSTINEIHEVLHELDRDLPE 317

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI-----AMLIYIWIRFKWYFALGAITTLILDITK 706
               +V    ++ L    I  VI + +      +++           L    ++ + I  
Sbjct: 318 GAEFVVLTDTNKFL-YASIRSVIRTLLEAILLVIVVVYVFLQDIKSTLIPAISIFVSIIG 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T    ++ G   NL  + A++  IG  V+D +VV + ++        S       D ++ 
Sbjct: 377 TFAVMSMIGFSINLLTLFALVLAIGTVVDDAIVVVEAVQAKFDEGYQSAVL--AADDAMK 434

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +     + +++       P+A+ GG+       F I MA  + ++A ++  ++  +   +
Sbjct: 435 DVSSAILTSTIIFMAVFFPVAMMGGTSGAFYAQFGITMAVAVGISAINAFTLSPALCALL 494

Query: 824 YD 825
             
Sbjct: 495 LK 496


>gi|293192656|ref|ZP_06609610.1| protein-export membrane protein SecF [Actinomyces odontolyticus
           F0309]
 gi|292820163|gb|EFF79160.1| protein-export membrane protein SecF [Actinomyces odontolyticus
           F0309]
          Length = 362

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 12/293 (4%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R   VG++    +    L+   GLN  I+F GG Q  V        S     + S  + 
Sbjct: 23  KRKVFVGLAAAVLVLGFALVAILGLNRSIEFTGGSQFDVAHVSDQSESFASRAVTSTGLV 82

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           + + +      +  VR+Q    DS    ++ + +          +T   +  +GP     
Sbjct: 83  EGTPKVTRVGTD-SVRIQTSSLDSAQTAQMRDALASAY---GVDATEVQSSSIGPSWGSS 138

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           +  K    ++I    + + + + F+ W  A  A+  L+ DI  T+G FA+  +E +   V
Sbjct: 139 VTTKAAQSLVIFMALIALLMTVYFRSWRMAASALLALVHDIAVTIGVFAILQVEVSPATV 198

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
              LT++GYS+ D VVV+D++R+           +F + ++ ++N+T+ RS+ TS+ A +
Sbjct: 199 IGFLTILGYSLYDTVVVFDKVRELTSDVYEQKHYTFAEYVNLAVNQTMVRSINTSVVALL 258

Query: 782 SVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            V  + +      G   +   ++ +  G++    SSIFIA+P+L+   +  AK
Sbjct: 259 PVGAILIIGSVALGPGTLVDISLALFVGMIAGTYSSIFIASPLLVTFQELSAK 311


>gi|320105645|ref|YP_004181235.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Terriglobus saanensis SP1PR4]
 gi|319924166|gb|ADV81241.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Terriglobus saanensis SP1PR4]
          Length = 1079

 Score =  177 bits (448), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 73/627 (11%), Positives = 173/627 (27%), Gaps = 29/627 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   +I   G +      LP   +  +P   P          +          
Sbjct: 27  RRPIFATVCALLIVLAGAVS-----LPTIPISLYPQLAPP---------QVNVSCNYVGA 72

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               V   + +  ++  + ++       +      + IT++F      +  A  V   + 
Sbjct: 73  NSADVESAVTIILEQAINGVEGMRYMSSTSSNDGTSSITVTFDTGYDLDIAAVDVQNRVA 132

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L        +  T      +  +              S  +     D +      
Sbjct: 133 TAQGRLPSTVNNTGISITKSNSNFVFAAGFISPDHSLSPSFISNYLDVYVSDALKRVPGV 192

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +        +    DP++L     T   ++      N        G+         Q
Sbjct: 193 GAVVIFGERKYAMRLWLDPNKLAARGLTPLDVTTALASQNIEIAAGQLGIPPSDPKQAYQ 252

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V     +S                     +S    G                      
Sbjct: 253 MAVRVVGRLSDPRQFEN-IIIKSNAPTSSTTVSTTTNGTGLVLLKDVGRAEIGAENYNTN 311

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              +            +  +          + A LR    P    I+          S +
Sbjct: 312 LKYSGGDAVGIGVQQLSNANALDVDRKCRAVLAELRKSFPPGLEGIIAVDTTTVISDSIT 371

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T A    +V++V+F+ +   +  ++   +I +++I T   + + G ++   ++ GI
Sbjct: 372 EVEHTLAEAIVIVIVVIFLFLQDWRATIIPAVTIPVSLIGTFIFIKIFGFSINSLTLFGI 431

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            L  GL VD  I+V E ++    +       +  +      S +  +++  +   V + F
Sbjct: 432 TLATGLVVDDAIVVIENVQRHIEQGVADAHEATSIAMREVTSAVIATSLVLISVFVPVSF 491

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---------IDINP 527
           F G      + F++T+  SI IS F A+++  A+   ++R ++ K+         +D   
Sbjct: 492 FPGTTGILYKQFSLTIAFSIAISAFNALTLSPALAAILLRREQHKTGLLGLILNPVDRGI 551

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +         + +      +      +         + +    + V    
Sbjct: 552 KKVISWYAVAVTWVVKVRYAFLLLFFAGLAATVYMYIHVPTAFVPTEDQSYFLIIVQTPP 611

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGE 614
              L+      + +       ++  G 
Sbjct: 612 GASLTYTADFADKVSKLVRDDKDVFGT 638



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 60/147 (40%), Gaps = 5/147 (3%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   +    T+ + +  T  F  +FG   N   +  +    G  V+D +VV + +
Sbjct: 390 LFLQDWRATIIPAVTIPVSLIGTFIFIKIFGFSINSLTLFGITLATGLVVDDAIVVIENV 449

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
           +++++         +    ++ E     + TS+      +P++ + G+       F++ +
Sbjct: 450 QRHIEQGV--ADAHEATSIAMREVTSAVIATSLVLISVFVPVSFFPGTTGILYKQFSLTI 507

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRA 828
           AF I ++A +++ ++  +   +     
Sbjct: 508 AFSIAISAFNALTLSPALAAILLRREQ 534



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 80/282 (28%), Gaps = 9/282 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S   +                         +        +     L++L + D   
Sbjct: 784  TFMGSSYINDFDFNNRSYRVYVQADQQFRRNAQDLKQYYVRSNANQMIPLDNLILVDEKS 843

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                     L R     G         + +               T         E+   
Sbjct: 844  GPQVIYHYNLFRSAEIDGSPAEGLSSGQGLANMEKLFEKNKMPGMTFSWTGLSLEEIESS 903

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G   +I     +++Y+ +      +      +  +   I   L   AL G+  ++     
Sbjct: 904  GKAIIIFGLGLLVVYLTLSAQYESFALPFIILLAVPTAILGALSLVALRGLSDDVYVQIG 963

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG S  + +++ +   + ++      S  D    +    L   + TS A  + VLP
Sbjct: 964  LVMLIGLSAKNSILIVEFAEQQLEE---GKSIIDAAITASELRLRPILMTSFAFILGVLP 1020

Query: 786  MAV-WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    G   +   S    +  G++++   ++F    + + + 
Sbjct: 1021 LYFASGAGALGRHSVGTAVVGGMLLSTVLNLFFIPVLYVILK 1062


>gi|332185343|ref|ZP_08387091.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Sphingomonas sp. S17]
 gi|332014321|gb|EGI56378.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Sphingomonas sp. S17]
          Length = 1035

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 76/661 (11%), Positives = 171/661 (25%), Gaps = 48/661 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G++       PQ  + RFPS  P               + +    
Sbjct: 8   RPIFAWVIAIAIVLMGIIAI-----PQMPVARFPSVAPPT-------------VSIYASY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L      L       +K       S     +  IT +F      E     V  
Sbjct: 50  PGATPQTLNDSVVSLVQRELSSVKNLLYFESSADTSGSATITATFRPGTNPEMAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ +  +L    ++  +   +     +++            +E S  + R  +D++   
Sbjct: 110 RLKTIEPRLPQVVRQTGVTVESASSGFLMIVSLLS-DGRQDEVELSDYMSRTIVDELKRI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T   ++      N        G        
Sbjct: 169 PGVGRVQNF-SAERAMRIWIDPAKLAGYGLTATDVTAAIAEQNVQIAPGSLGAEPTAGGQ 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    ++                      I                 I       
Sbjct: 228 RVLVPLTADGQL-------------KTPEDFAAIILKANTDGSSVTLDKVARIELGRQSF 274

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    +     +        L     P                
Sbjct: 275 GNDTRENGKFAASVGIQLTPGANAVAASKAVRARMTELAHSLPPGMSWSAPFDTAPFVRI 334

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+++ +   ++ L+      + ++ T+A++   G ++ + ++
Sbjct: 335 SIEKVLHTLAEAMLLVFLVMYLFLQKVRYTLIPAIVAPIALLGTIAVMLATGYSINVLTM 394

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    + +  S   +           I    +      + 
Sbjct: 395 FGMVLAIGIIVDDAIVVVENVERLMHEEKLSPADATRKAMQEITPAIIGITLVLSAVFIP 454

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +       G   R F++ M +SIL S F A+++  A+   +++            +    
Sbjct: 455 MALAAGSVGTIYRQFSMAMAVSILFSAFLALTLTPALCATLLKPLDEGQPKNRFFTWIDH 514

Query: 534 IPDCIAIQFMRARFWGVGISILF------SICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
             D     +       +  S          +  + + F +  +  +  +           
Sbjct: 515 QFDRATRGYQGWVATLLKASGRMMLVFAAIVGMLAIAFVNLPSSFMPEEDQGYFMTSFQL 574

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P D +  R+      +          +    +      G       V  ++K        
Sbjct: 575 PADATAARTLAAVKALEKHMTTRPGVDTTESILGFGFSGSGPNAAMVYTILKDWKDRGGT 634

Query: 648 L 648
            
Sbjct: 635 N 635



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 90/248 (36%), Gaps = 12/248 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V  ++   + + R +  +    +   +        L         S A    +  +   
Sbjct: 258 SVTLDKVARIELGRQSFGNDTREN--GKFAASVGIQLTPGANAVAASKAVRARMTELAHS 315

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTL 700
           +   +  S   +T         +++      +++  + M +++  +R+    A+ A   L
Sbjct: 316 LPPGMSWSAPFDTAPFVRISIEKVLHTLAEAMLLVFLVMYLFLQKVRYTLIPAIVAPIAL 375

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                 T+      G   N+  +  ++  IG  V+D +VV + +     ++   +S  D 
Sbjct: 376 ----LGTIAVMLATGYSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMHEEKLSPADA 429

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             K++ E     +  ++      +PMA+  GSV      F++ MA  I+ +A  ++ +  
Sbjct: 430 TRKAMQEITPAIIGITLVLSAVFIPMALAAGSVGTIYRQFSMAMAVSILFSAFLALTLTP 489

Query: 818 PILLFIYD 825
            +   +  
Sbjct: 490 ALCATLLK 497



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   +  +  + L +   +    L G+  ++     +
Sbjct: 864  QAPMLLALSMLVVFLVLAALYESWSIPMAVMLVVPLGLIGAVSAVMLRGMSNDIFFKVGL 923

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  ++  +      S  D    +    L   V TS+A  + V+P+
Sbjct: 924  ITIIGLSAKNAILIVEFAKQYREA---GRSLIDAAIAAARVRLRPIVMTSLAFTLGVVPL 980

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             + GG       +    +  G++     ++
Sbjct: 981  MLAGGASAETQHAIGTGVFGGMITGTVLAL 1010


>gi|257061655|ref|YP_003139543.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 8802]
 gi|256591821|gb|ACV02708.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 8802]
          Length = 1041

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 84/643 (13%), Positives = 176/643 (27%), Gaps = 41/643 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +G++  L        + RFP   P                     
Sbjct: 6   KRPVFATVCALVILLVGIICLL-----TLPVARFPDISPTTIE---------VQATYSGA 51

Query: 62  EDDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++    +   S     + I+  F  SR K+  A  +   + 
Sbjct: 52  SAEVVENAVTNILERQINGVEGLRYLTSSSSNNGTSTISAVFDASRNKDIAAVDIQNQVS 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L  + +++ +  T +    ++      D      +  S    R  +D +   +  
Sbjct: 112 IVESQLPQEVQQSGISVTKQSNNFLLGIALYSDDNRYDNVFLSNYADRYLVDNLKRIKGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D +RL     TT  +       N        G     +    Q
Sbjct: 172 SNIQIFGERRYAMRLWLDANRLASRGLTTQDVVDALSKQNRQVGAGKIGGEPAIEGQQYQ 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    +++                +    +   +                        
Sbjct: 232 LDLRAVSQLT-------------TPEEFNNLLLKTDENGAIIRLKDVGRAELGAQDYNTF 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +              +     P     +          S +
Sbjct: 279 LRYRGQDAIGMGVLQLTGSNALDVAHKVKEEMNKIALSFPPGLKYTIAFDTTQFVEESLA 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   LV++V+ + +   +  L+   +I L +I T A + L   ++   ++ G+
Sbjct: 339 EVVNTIIMSVVLVVLVILLFLQNWRTTLIPSLTIPLALIGTFAFVKLFDFSVNTLTLFGL 398

Query: 421 VLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLF 478
            L  G+ VD  I+V E+I      +N S   +        +S  I  S +   +   V F
Sbjct: 399 TLATGMVVDDAIIVVEQISRYIEERNMSPQEAATEAMRELFSAVIATSLVLMAVFVPVAF 458

Query: 479 FFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINP 527
           F G      + FA+T+  SI IS F A+++  ++   I               +  D   
Sbjct: 459 FPGTTGALYQQFALTIAFSITISTFLAVTLTPSLCALILRKGQGFPGWIGVMFRRFDNFL 518

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +       R       IL  + +   L         + +G     + A  
Sbjct: 519 EEVRRQYRRSLLGLVQIKRLMVGIFIILLGVTAWLYLKVPTAFLPDEDQGYFLTIIKAPD 578

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
            V L      +  ++   +     DG              + A
Sbjct: 579 GVSLQYTNDVMRKVETAILEEPEIDGTFAIAGFSVTGSSANDA 621



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 60/142 (42%), Gaps = 5/142 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L    T+ L +  T  F  LF    N   +  +    G  V+D ++V +++ + ++
Sbjct: 362 WRTTLIPSLTIPLALIGTFAFVKLFDFSVNTLTLFGLTLATGMVVDDAIIVVEQISRYIE 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
               ++S ++   +++ E     + TS+      +P+A + G+       FA+ +AF I 
Sbjct: 422 E--RNMSPQEAATEAMRELFSAVIATSLVLMAVFVPVAFFPGTTGALYQQFALTIAFSIT 479

Query: 807 VAASSSIFIAAPILLFIYDWRA 828
           ++   ++ +   +   I     
Sbjct: 480 ISTFLAVTLTPSLCALILRKGQ 501



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 80/241 (33%), Gaps = 15/241 (6%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L +L                L R     GD+       + ++                  
Sbjct: 797  LSNLVKVTSQVGPQTINHYNLYRSAEINGDAAPGVSSGQAMQVMEMAAKQALPQGFGYEW 856

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFKW---YFALGAITTLILDITKTLGFFALF 714
                  EL   G+  +I     + +++ +  ++         +  + L I   L    L 
Sbjct: 857  SGISLEELESGGLAPIIFGLGLIFVFLVLAAQYENYIDPFIILLAVPLAILGALIAQFLR 916

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGR 771
            G   ++     ++ LIG +  + +++ +   ++R+        +       ++  E L  
Sbjct: 917  GFPNDVYCQIGLVMLIGLASKNSILIVEFANQLREE------GLPIVKAAVEAAQERLRP 970

Query: 772  SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + T+++  + + P+ V    G     S    +  G+++A+  S+F+   + + +     
Sbjct: 971  ILMTALSTLLGIFPLMVATGAGAGSRQSLGTAVFGGMLIASFLSLFLVPILYIMVKIMTE 1030

Query: 829  K 829
            K
Sbjct: 1031 K 1031


>gi|157376532|ref|YP_001475132.1| preprotein translocase subunit SecD [Shewanella sediminis HAW-EB3]
 gi|157318906|gb|ABV38004.1| protein-export membrane protein SecD [Shewanella sediminis HAW-EB3]
          Length = 604

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 145/516 (28%), Positives = 253/516 (49%), Gaps = 32/516 (6%)

Query: 25  NFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL 81
           + L  S+    P  +       I LGLDLRGG   +L+V+ +         + D +R F 
Sbjct: 104 SQLTLSLAPAAPDWLLSMGFTPIKLGLDLRGGVQFLLDVEVEPVYQLHYDAFVDSVRQFT 163

Query: 82  KKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           + +G+   S+R   +  + ++  D+  + +I   +                   +     
Sbjct: 164 RMQGLNGVSVRLDSEAGVVITMPDTSHRGDIRQFIKTNYPIWQ-----------VTNLEN 212

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
           + +      +   ++    ++Q+++I+R RI+Q+GI+E+ +QR G HRI I+LPG QDP+
Sbjct: 213 RSLKADFKPDEKVKIRDLTVKQNLQIMRSRIEQLGITEALVQRQGEHRIRIELPGVQDPA 272

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
             + ++G TA ++F++V             + L+D       V  K  + G H+  A A+
Sbjct: 273 AAKSVIGATASLAFYEVKD-----AGSVNAKILKDKSELPVYVARKPVLGGEHIVDARAS 327

Query: 261 FDPKTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                   VV       G            +       +        V     + +    
Sbjct: 328 LGEMGMPEVVIHLDRAGGKVMSDFSRDNIGKPMATSYSEYSRDEQGKVTQSTEVISVATI 387

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           Q+    +  I+G      A  LA +LRAGS+   + IVEER +G  LG+++I  G  A+ 
Sbjct: 388 QSQLGDRFSITGAGDYSQAQQLALLLRAGSMTAPVTIVEERTIGPSLGAENITNGFSALG 447

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAV 428
            G+ + +LFM + Y + G VA+ ++  N+++   LL+L+  A LTLP IAG+VL +G+AV
Sbjct: 448 LGMAMTLLFMGLWYRRLGWVANVALIANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAV 507

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D+N+L+ ERI+++ ++ +    ++D GF  A STIFD+N T +I  VVL+  G G ++GF
Sbjct: 508 DTNVLIFERIKDKLKEGRGFAHAIDRGFDSAISTIFDANFTTMITAVVLYSIGNGPIQGF 567

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           A+T+GL +L SMFT I   RA++ ++      + + 
Sbjct: 568 ALTLGLGLLTSMFTGIFASRALINWVYGRDFSRDVK 603



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 75/172 (43%), Gaps = 5/172 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  E I  G   + +     L+++ + ++      A   LI ++    G  AL  
Sbjct: 429 TIGPSLGAENITNGFSALGLGMAMTLLFMGLWYR-RLGWVANVALIANMVILFGLLALIP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  +K       F   ID+  +  +     
Sbjct: 488 GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLKE---GRGFAHAIDRGFDSAISTIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +    I+ + +   G   I  FA+ +  G++ +  + IF +  ++ ++Y  
Sbjct: 545 ANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINWVYGR 596


>gi|170698196|ref|ZP_02889274.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
 gi|170136873|gb|EDT05123.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
          Length = 1059

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 69/520 (13%), Positives = 143/520 (27%), Gaps = 40/520 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   G+L       PQ  + ++P   P               +V+    
Sbjct: 10  RPVFAWIVALAIVVAGVLAI-----PQLPIAQYPRLAPP-------------RVVITAAY 51

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG--IGVFSMRQIQNK--ITLSFADSRFKENIADKVTL 117
                  +       +   L      +   +         I ++F+     +     V  
Sbjct: 52  PGASTETVDGDVGSIIEESLDGADGLLYYGTSSDGHGNLEIDVTFSPGTDPDIALVDVNN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V S+L     +  +         ++L           + +    + R  + ++  +
Sbjct: 112 RLKQVESRLPQQVVQQGIGVFKAANTFLMLVTLTSTDGTRDSAQLGDYLNRYVLRELKRA 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP +LR+       +       N +      G        
Sbjct: 172 PGVGAAELWDA-DQALRVWLDPHKLREYGVGADDVIAAIGTQNATVTAGAIGDAPFPGGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K +++                +    +   +             +       
Sbjct: 231 QLTASIVVKGQLA-------------SPDEFGRIVLKSKTDGSAVRVADVARVEIGRDDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T        A L     P     V          
Sbjct: 278 SFYSRLNGRPAATVGIQLGPRGNALETSNAIRARLAELSRVLPPGVAIEVPFDGAHFVKI 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV  V+++ +   ++ LV    I + ++    ++   G ++ + ++
Sbjct: 338 AIREVVLTLVEAVVLVFCVMWLFLRDLRYTLVPTVVIPVTLMGAFVVMWAFGLSINVFTM 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +      R    I           V +
Sbjct: 398 FGLVLAIGILVDDAIVVVESVHRVMEEGVSPRDATRRAMKRIGGAIVGVTAVLTAVFVPM 457

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            FF G      R FA+ M  S+L+S F A+S+  A+   +
Sbjct: 458 AFFPGTVGGIYRQFAVAMIASMLVSSFMALSLTPALCANL 497



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 89/235 (37%), Gaps = 7/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V ++ V              +        +       G+++  +  +     +++ ++P 
Sbjct: 262 VRVADVARVEIGRDDYSFYSRLNGRPAATVGIQLGPRGNALETSNAIRARLAELSRVLPP 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                    G    +  IR+ ++ ++ + + +   +W+  +   + L     + + +   
Sbjct: 322 GVAIEVPFDGAHFVKIAIREVVLTLVEAVVLVFCVMWLFLRDLRYTLVPTVVIPVTLMGA 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG+  N+  +  ++  IG  V+D +VV + +    ++    +S RD   +++  
Sbjct: 382 FVVMWAFGLSINVFTMFGLVLAIGILVDDAIVVVESVH---RVMEEGVSPRDATRRAMKR 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  +       +PMA +    G +   FA+ M   ++V++  ++ +   +
Sbjct: 439 IGGAIVGVTAVLTAVFVPMAFFPGTVGGIYRQFAVAMIASMLVSSFMALSLTPAL 493



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 13/238 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS + +   ++    ++  N     +   R         A   +  +      
Sbjct: 796  RTGDMVPLSAIAAPHWTIGPVMLNRYNGYPSLDISGRAAPGTSSGAAMAEMERLAGALPA 855

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I         E         L+      V +S +A+ + +   ++ W   L  +T + L
Sbjct: 856  GIGFDWVDAAREEQVAARQTPLL------VGLSVLAVFMALAALYESWSIPLSVLTIVPL 909

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +      G+  ++     ++T++G +  + +++    R    L    +  R  + 
Sbjct: 910  GMIGAIAAVLARGMPNDVYFKVGMITVVGLAAKNAILIVQYARD---LAGRGVPLRQAVI 966

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             +        V TSMA  + V+P+ +    G     S       G++ A    +  A 
Sbjct: 967  DAAAARFRPIVMTSMAFLLGVVPLVLATGAGAESRRSIGTGAFGGVLAATMFGLVFAP 1024


>gi|323498531|ref|ZP_08103524.1| preprotein translocase subunit SecF [Vibrio sinaloensis DSM 21326]
 gi|323316420|gb|EGA69438.1| preprotein translocase subunit SecF [Vibrio sinaloensis DSM 21326]
          Length = 300

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 76/288 (26%), Positives = 142/288 (49%), Gaps = 6/288 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +     R R+    +S+   + S+  L   GLN G+DF GG+   V  +  +  S +  
Sbjct: 4   YLKHNIRRIRYITTFVSVALMVVSLVALGARGLNMGLDFTGGMVTEVAVDNNLTNSDLLK 63

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L        S    D    +++R         A       V+K + +     T+ +  +
Sbjct: 64  VLTPELGEFTSVTRSDEAGRWVIRYPIPQAGQTAPD-----VQKVLEKASHQVTVVSNSM 118

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG ++  +L+ +G + ++IS + +L Y+  RF+W  A G++  L+ D+   LGFFA   +
Sbjct: 119 VGSQVGEDLVDQGGLALLISMMCILGYLCFRFEWRLASGSLLALVHDVVLVLGFFAATQM 178

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT  AA+L ++GYS+ND +++ DR+R+ + +   S    ++ D+++  T  R++ TS
Sbjct: 179 EFNLTVFAAILAILGYSLNDSIIIADRIRE-LLVAKQSTPTEEINDQAVIATFSRTMVTS 237

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               ++V  + + GG+ +  FA  M  GI+    SSI +   +  ++ 
Sbjct: 238 GTTLMTVAALWLMGGNALEGFATAMFIGILSGTWSSISMGTVLPEWLK 285


>gi|187920525|ref|YP_001889557.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Burkholderia phytofirmans PsJN]
 gi|187718963|gb|ACD20186.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phytofirmans PsJN]
          Length = 1043

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 75/677 (11%), Positives = 187/677 (27%), Gaps = 41/677 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G +  +        + ++P   P               + +    
Sbjct: 8   RPVFANVIALIVMLLGAVALI-----NLPIAQYPPITPPT-------------VQVVARF 49

Query: 63  DDFVN-GFLQMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                   +   +  + + +           +        +T++FA     +     V  
Sbjct: 50  PGASAATLIDRVALPIETQVNGVENALYMQSTSTNDGTYTLTVTFAVGTDVDKAQVLVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L    ++  +         + L           ++  S   +    D +   
Sbjct: 110 RVSAATAQLPQAVQQQGVTVRKRSTAILQLYTLQSPDPKYDSLFLSNYAVIYLRDTLARL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +   T A +       +        G        
Sbjct: 170 PGVGDVTVFGTGQYSMRVWLDPQKLSERNLTAADVMNAIQSQSKDVSAGQLGSEPNSGGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V  +  +S           DP     ++  +  + G                +  
Sbjct: 230 AFQLTVTMRGALS-----------DPHEFDDIIVKADPDNGGHFVRIRDVGRTELGSSSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +            A L           +          
Sbjct: 279 GQFFNLDGKPAAGIAIYQLPEANALEVGNAVKATMARLAKDMPKGVSYQLPFDTTTFVRQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T    A LVL V+ + +   +  LV   +I + +I T   + +LG ++ L ++
Sbjct: 339 SVIDVYKTLFEAALLVLAVILLFLQNWRAMLVPATTIPVTIIGTFGAIYMLGFSINLLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             IVL IG+ VD  I+V E I +   + ++   +           I    +  +   +  
Sbjct: 399 FAIVLAIGIVVDDAIVVVEGITQHIEQGKTPKQAAIDAMHELLGPIIGITLVLISVFLPS 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLSR 530
            F G   G   R FA+ +  + +IS   A+++     +  +R+ +         +     
Sbjct: 459 AFLGGVTGQMYRQFALVVVATTVISAINAVTLKPVQSVRWLRHARPGKPNIVYRVFDKGY 518

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +    + +        G+ + I   + +        +             ++A +  D
Sbjct: 519 VRVEKGYVRVVSWFVARCGLALVIALVLGAGSAFLLTRIPTSFIPLEDQGYVLIAAQLAD 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +    E+    +       G  + +      P D+ A      ++   + +      
Sbjct: 579 AASLGRTREASTQIEKRIGAIPGVSHVVSIGGISPLDNNASLPNSALIYVTLDDWSKRGK 638

Query: 651 IQNTEIVGPKISRELIR 667
            Q+   +  +++ EL +
Sbjct: 639 GQDLRSLYLRMNSELAK 655



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 61/169 (36%), Gaps = 7/169 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                    +  + +   +  +++ W   +  +  + L +  T G  A  G   NL     
Sbjct: 870  NSAYWVFAVGVLLVFCVLAAQYESWLLPVAVVLAVPLALLGTAGTLAALGAANNLYTQIG 929

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LI  S  + +++ +  R    L    +   +   ++        + TS A  + V+P
Sbjct: 930  LVLLIALSAKNAILIVEFAR---HLRAQGVGITEAAIEAARLRFRPIMMTSFAFILGVVP 986

Query: 786  MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +  G+      S  I +  G++ +   ++       + +     ++A
Sbjct: 987  LVIATGASASARRSLGIAVFSGMLASTCIAVLFIPSFYVLLQRLGERHA 1035


>gi|307320591|ref|ZP_07600005.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti AK83]
 gi|306893741|gb|EFN24513.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti AK83]
          Length = 1077

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/686 (10%), Positives = 178/686 (25%), Gaps = 47/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+      L +  + +FP  +P               + +    
Sbjct: 9   RPRFAAVISIVLTLAGLIA-----LTRLPIAQFPDIVPP-------------QVSVTASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      L S +     +         +    +T++FA     +     V  
Sbjct: 51  PGAGADVVEATVAQPLESKVVGVDNMLYMKSTSGADGTYSLTVTFAVGTDPDIATVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  + K++ +         + +   + +      +  S       +D I   
Sbjct: 111 RVALAEPVLPAEVKQSGVSVQKRSSSLMQVIAIHGENDEFDNLFLSNYATINVLDTIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D  RL  L  T   +       N        G + + D  
Sbjct: 171 PGVGDATLFGAQDYSMRVVLDIDRLTNLGLTPTDVINALKTQNVQAAIGRIGAQPMTDDP 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  ++ +  ++                +    +   E             +       
Sbjct: 231 LFQLNIQTQGRLT-------------DPAQFEDVVLRAEPDGSFVRIRDVARVELGSVSA 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +    +           +     E        L A         V          
Sbjct: 278 DSTARINGKPVAMIGTYQAPGANALAATEGVQQAMDRLAAAFPEGLTYTVSYDTSDFVQA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV+IV+F+ +   +  L+   ++ + ++ T A++  +G +L   S+
Sbjct: 338 SVENVEHTLFEAFALVIIVVFLFLGNWRAALIPLIAVPVALVGTFAVILAMGFSLNTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E +          S   +  +        I    +  L   V
Sbjct: 398 LALVLAIGIVVDDAIVVVENVERVMEENPGMSAAQAARLAMGEITGAIVAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDIN 526
            + F  G +    + FA+ + +S++IS   A+++  A+   +++            I   
Sbjct: 458 PVAFIPGLSGQLFQQFAVAVSVSMVISAINALTLSPALCAILLKPHHGPKRGILGWISRG 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                            RA    + +++                   + +G     +   
Sbjct: 518 IDRTRNGYAHVAGSIARRAIIGVILLAVAIGASGWLFRIVPTGFLPSEDQGAFFAEIRLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +   + +  ++      +                    +    +  +K       
Sbjct: 578 EGASFNRTDAVVREVETMLGGIEGVANVTTVTGYSFLDGIAKSSSAFAIVTMKPFAERQD 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++             +    +  
Sbjct: 638 ESASVNAAIGTVMAKGAAIRNAQVFA 663



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 80/223 (35%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 + L  QP   ++  + L  +++     +P            +      +  ++  
Sbjct: 817  NNYRSITLNGQPAPGISSGQALAAMEQVSAATLPPGYSFEWTGTALQELEAAGQTTVILA 876

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +    A L  + +   W   +  + ++ + +   L    + G+ F++ A   ++ LI  +
Sbjct: 877  LALLFAYLFLVALYESWTIPIPVLLSVSVGVAGALVAVLVAGLSFDIYAQIGLVVLIALA 936

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +  +          +  D   +         + TS A  + ++P+    G+ 
Sbjct: 937  SKNAILIVEFAK---FQREKGATIVDAAVEGARTRFRAVMMTSFAFIVGLIPLVTADGAG 993

Query: 794  I---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +    +    +A G++ A+   IFI   + +     R +  ++
Sbjct: 994  MLSRRAVGTGVAGGMLAASLLGIFIIPALYVVFQWLRERGHKL 1036



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 86/246 (34%), Gaps = 11/246 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V          D + +        +   Q    +++A T  ++    ++    
Sbjct: 260 SFVRIRDVARVELGSVSADSTARINGKPVAMIGTYQAPGANALAATEGVQQAMDRLAAAF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWYFALGAITTLIL 702
           P               +  +      +  +   ++I   + F     W  AL  +  + +
Sbjct: 320 PEGLTYTVSYDTSDFVQASVENVEHTLFEAFALVII---VVFLFLGNWRAALIPLIAVPV 376

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N  ++ A++  IG  V+D +VV + + + +      +S      
Sbjct: 377 ALVGTFAVILAMGFSLNTVSLLALVLAIGIVVDDAIVVVENV-ERVMEENPGMSAAQAAR 435

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++ E  G  V  ++      +P+A      G +   FA+ ++  +V++A +++ ++  +
Sbjct: 436 LAMGEITGAIVAITLVLLSVFVPVAFIPGLSGQLFQQFAVAVSVSMVISAINALTLSPAL 495

Query: 820 LLFIYD 825
              +  
Sbjct: 496 CAILLK 501


>gi|241765571|ref|ZP_04763530.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax delafieldii 2AN]
 gi|241364631|gb|EER59674.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax delafieldii 2AN]
          Length = 1077

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 66/585 (11%), Positives = 154/585 (26%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P   P + +                  
Sbjct: 10  RPIFAGVLSVLIFLGGLIA-----LRGLPISEYPEVAPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++FA     +     V   +  
Sbjct: 56  PKVIAETVATPLEESINGVEGMLYMGSQATTDGVMTLTVTFALGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++       
Sbjct: 116 AEPRLPEEVRRLGVTTVKSAPDLTMVVHLVSPNNRYDIDYLRNYAVLNVKDRLARIGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   + + +       N      + G          Q 
Sbjct: 176 QVQVFGGGDYSMRAWLDPQKVAQRGLSASDVVTAIRGQNVQAAAGVVGASPGLPGVDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    A      
Sbjct: 236 SINAQGRLQTEE-------------EFGDIIVKTGADGAVTRLRDIARLELGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              ++          +          S   
Sbjct: 283 LLNNDPAVGMGVFQAPGSNALDISANVRKTMDEIQKNMPEGVEYRIAYDPTQFVRASIKS 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++V+ T A+L LLG ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSVVGTFAVLHLLGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   +++        +       F  +  
Sbjct: 463 GLTGQFYRQFAVTIAISTVISAINSLTLSPALSALLLKGHDEPKDALTRGMDKVFGGLFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R      G           +   +    G        +
Sbjct: 523 GFNRLFHRGSEAYSGGVKRVIGRKALMFVIYLALVGATVGLFKIV 567



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/163 (11%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               ++   ++ + + + +  +++     +  I  + + I   +    L   + N+     
Sbjct: 879  NSAVLVFPLAILLVFLVLAAQYESLTLPIAIILIVPMGILAAMTGVWLTKGDNNVFTQIG 938

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G S  + +++ +  R+   L     +      ++    L   + TS+A  + VLP
Sbjct: 939  LIVLVGLSAKNAILIVEFARE---LEFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLP 995

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + +    G  +  +  + +  G++   +  +F+     + +  
Sbjct: 996  LVLSTGAGAEMRSAMGVAVFAGMIGVTAFGLFLTPVFYVLLRK 1038



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 83/228 (36%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L +     +      G     +    +      Q  + E V+ +I      
Sbjct: 275 AADYSLRSLLNNDPAVGMGVFQAPGSNALDISANVRKTMDEIQKNMPEGVEYRIAYDPTQ 334

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + V   +   +    +V ++               W  ++  +  + + +  T 
Sbjct: 335 FVRASIKSVIHTLLEAIALVVLVVILFLQT-----------WRASIIPLLAVPVSVVGTF 383

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               L G   N  ++  ++  IG  V+D +VV + + +N++     ++ R+   +++ E 
Sbjct: 384 AVLHLLGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEA---GLTPREATYRAMREV 440

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            G  +  ++      +P+A      G     FA+ +A   V++A +S+
Sbjct: 441 SGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTVISAINSL 488


>gi|152987095|ref|YP_001348630.1| multidrug efflux protein [Pseudomonas aeruginosa PA7]
 gi|150962253|gb|ABR84278.1| RND multidrug efflux transporter [Pseudomonas aeruginosa PA7]
          Length = 1045

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 78/684 (11%), Positives = 186/684 (27%), Gaps = 43/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPVFAWVVSLLIVLAGILAI-----RFLPVAQYPDIAPPVV---------NVSASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   L    +   +          +    Q  +TL+F      +  A +V   L+ V
Sbjct: 54  AKVVEEALTAIIEREMNGAPGLLYTKATSSTGQASLTLTFRQGVNADLAAVEVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +++ +      +   ++           A+E         +  +   E   +
Sbjct: 114 ESRLPESVRRDGIYVEKAADSIQLIVTLTSASGRYGAMELGEIASSNVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP+RL  +  + + +       N        G   + DS      
Sbjct: 174 VETWGA-EYAMRIWPDPARLTSMNLSASDLVNAVRRHNARLTVGDIGNLGVPDSAPISAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+    +                 +                      +    +       
Sbjct: 233 VKVDDTL-------------VTPEQFGEIPLRIRADGGAIRLRDVARVEFGQSEYGFVSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L           +          S    
Sbjct: 280 VNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSYNIPYDTSAFVEISIRKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+++ +   +  L+    + + ++ T  ++  LG ++ + ++ G+VL
Sbjct: 340 VSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  S   +      +    I    +  +   V + FF 
Sbjct: 400 AIGILVDDAIIVVENVERLMAEEGLSPHDATVKAMRQISGAIVGITVVLVSVFVPMAFFS 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+T+ +SI  S F A+S+  A+   +          +       +   L 
Sbjct: 460 GAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLRPLDAGHHEKRGFFGWFNRTFLR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R   W +  +++  + ++            + +G   + V+     
Sbjct: 520 LTGRYQKAVGGILARPIRWMLVYALVIGVVALLFARLPQAFLPEEDQGDFMIMVMQPEGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            ++   +N+  ++      +       + V      GD  +   +   +K          
Sbjct: 580 PMAETMANVADVERYLAEHEPVA--YAYAVGGFSLYGDGTSSAMIFATLKDWSERQDASQ 637

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            +        +    L  + +  +
Sbjct: 638 HVGAIVERINQRFAGLPNRTVYAM 661



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 82/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +        L        ++VA  + +     +++   P     
Sbjct: 263 DVARVEFGQSEYGFVSRVNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSY 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N            IRK +  ++ + + +   +++  + +   L     + + +  T    
Sbjct: 323 NIPYDTSAFVEISIRKVVSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVM 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  +  ++  IG  V+D ++V + +     +    +S  D   K++ +  G 
Sbjct: 383 LGLGFSINVLTMFGMVLAIGILVDDAIIVVENV--ERLMAEEGLSPHDATVKAMRQISGA 440

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  ++      +PMA + G+V      FA+ +A  I  +A  ++ +   +   +  
Sbjct: 441 IVGITVVLVSVFVPMAFFSGAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLR 497



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 87/263 (33%), Gaps = 11/263 (4%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
             ID  G + +       V L+       +L    ++  N     N   +         A 
Sbjct: 776  SIDDIGKLHVRNEQGEMVPLATFARAAWTLGPPQLTRYNGYPSFNLEGQAAPGYSSGEAM 835

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              + ++++     +    + Q+ E              +  + +  I  L    +   W 
Sbjct: 836  AAMEQLMQGLPEGVAHEWSGQSYEERLSGAQAP----ALFALSV-LIVFLALAALYESWS 890

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I  + L +   L   +L G+  ++     ++T+IG S  + +++ +  +     Y
Sbjct: 891  IPLAVILVVPLGVLGALLGVSLRGLPNDIYFKVGLITIIGLSAKNAILIIEVAKD---HY 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVIGSFAIPMAF--GIVVA 808
               +       ++    L   V TS+A    V+P+A+  G       AI      GIV A
Sbjct: 948  QEGMDLLQATLEAARLRLRPIVMTSLAFGFGVIPLALSSGAGSGAQIAIGTGVLGGIVTA 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F+     L +        
Sbjct: 1008 TVLAVFLVPLFFLVVGRLFRLRK 1030


>gi|320107849|ref|YP_004183439.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
 gi|319926370|gb|ADV83445.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
          Length = 1160

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 75/672 (11%), Positives = 185/672 (27%), Gaps = 38/672 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I  +G++        Q  +   P                    +     
Sbjct: 10  RPVATILLMVAILLVGVVA-----YRQLPISALPEVNYPTIQ---------VQTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + ++  +    ++    ++       +     + I L F  S   +    +V   +   
Sbjct: 56  PEVMSSTVTGPLEKQFGQMQGLSQMTSTSSGGASVIVLQFDLSEDIDVAEQEVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NS L  D       + T    + VL+   +   +    E       +   +I        
Sbjct: 116 NSYLPTDLPIPPTYSKTNPADAPVLT-LALTSKVLPLSEVQDLADTRLAPKISQLAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  + +P+ L     T   +                         G    
Sbjct: 175 VTIQGGQKPAVRIQANPTALASYGLTLEDVRTAIT--------------------GTSVN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                           AN    +      +                 I   +        
Sbjct: 215 TAKGTLNGAQQAYTIDANDQLTSADQYKQVVVAYRNGSAVMLPEVAKITNGVENSRLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +    +++   L   L+A                    S    
Sbjct: 275 KDTTPAIILSIQRQSDANTIKVVDSIKALLPQLQASLPASIEVHTLTDRTITVRASVEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV+ V+++ +   +  ++   ++ L++I T A +  LG +L   ++  + +
Sbjct: 335 EFELLLTIGLVIAVIYVFLRSWRATVIPAVAVPLSLIGTFAAMYALGYSLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +      +   G      TI    ++ +   + L F G 
Sbjct: 395 STGFVVDDAIVMIENISRYLEEGLDPLEAALKGAEEIGFTILSLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++I+IS   ++++   M   ++++   +                I 
Sbjct: 455 ITGRLFREFAVTLAVTIIISAVVSLTLTPMMASRLLKHTPPEEETRFYKWSEHQFERIIG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                 ++     S++  I    ++    L Y I             + +  +   ++ +
Sbjct: 515 FYGRTLKWVLGQQSVVLVIAFSMIICAGLLYYFIPKGFFPTQDTGIIQAITQAPEATSFD 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           ++   + +      E   +  +    G   + T       +   + +    +  TE++  
Sbjct: 575 AMSDREQAVARSVLEDPAVESVSSFIGVEASNTTPNTGRMQINLKALSTRGVSATEVIQR 634

Query: 660 KISRELIRKGIV 671
              +     GI 
Sbjct: 635 LRPKLNRLTGIK 646



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 60/148 (40%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I  +  +IY+++R  W   +     + L +  T       G   N   + A+    G+
Sbjct: 340 LTIGLVIAVIYVFLR-SWRATVIPAVAVPLSLIGTFAAMYALGYSLNNLTLMALTISTGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +     +   +   K   E     +  +++    ++P+   G  
Sbjct: 399 VVDDAIVMIENI---SRYLEEGLDPLEAALKGAEEIGFTILSLTVSLIAVLIPLLFMGDI 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FA+ +A  I+++A  S+ +  
Sbjct: 456 TGRLFREFAVTLAVTIIISAVVSLTLTP 483



 Score = 44.3 bits (102), Expect = 0.078,   Method: Composition-based stats.
 Identities = 13/82 (15%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                 + I  +        + T++AA    LP+A+    G  +     + M  G++++  
Sbjct: 1061 GKDPEEAIYNASLLRFRPIMMTTLAALFGGLPLALGRGIGAELRRPLGVAMVGGLLLSQV 1120

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    I L+      +  R
Sbjct: 1121 LTLYTTPVIYLWFDRMSQRLQR 1142


>gi|15827165|ref|NP_301428.1| preprotein translocase subunit SecF [Mycobacterium leprae TN]
 gi|221229643|ref|YP_002503059.1| preprotein translocase subunit SecF [Mycobacterium leprae Br4923]
 gi|13638490|sp|P38386|SECF_MYCLE RecName: Full=Protein-export membrane protein secF
 gi|3136010|emb|CAA19081.1| protein export membrane protein SecF [Mycobacterium leprae]
 gi|13092713|emb|CAC29996.1| putative protein-export membrane protein [Mycobacterium leprae]
 gi|219932750|emb|CAR70581.1| putative protein-export membrane protein [Mycobacterium leprae
           Br4923]
          Length = 471

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 140/324 (43%), Gaps = 18/324 (5%)

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           +         L       + +  R     +  +    ++  +   G  +GIDFKGG  + 
Sbjct: 58  LARFYTGLSRLYTGTGVFEVVGRRRLWYSVGGVIVAVAVLSIIVRGFTFGIDFKGGTTVS 117

Query: 583 VLANRPVDLSVVRSNLE-------SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +  +  V  +      +       +L     S        +  VR+  +   +   +++ 
Sbjct: 118 MPVSPGVGGTGAIEVAQVADVFKKTLGSDPESVVVVGNGASATVRISSKTLSNDQTSKLR 177

Query: 636 EMVKKKITEIV----PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             +            P     +   V      ++ +K ++ +++  + + +YI +R++ Y
Sbjct: 178 NALFDAFGPKGADAKPSKQAISDAAVSETWGGQITKKVVIALVVFLVLVGLYITVRYERY 237

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK-- 749
            A+ A+TT+  D+T T G ++L G E     V  +LT++G+S+ D V+V+D++ +N    
Sbjct: 238 MAISALTTMCFDLTVTAGVYSLVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGF 297

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFG 804
            +TT  +F +  + +IN+T  RS+ TS+ + + VL +      + G   +   A+    G
Sbjct: 298 QHTTRRTFAEQANLAINQTFMRSINTSLISVLPVLALMVVAVWLLGVGTLKDLALVQLVG 357

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I+V   SSIF A P+L+ + +   
Sbjct: 358 IIVGTYSSIFFATPLLVTLRERTE 381


>gi|307823716|ref|ZP_07653944.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacter tundripaludum SV96]
 gi|307735010|gb|EFO05859.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacter tundripaludum SV96]
          Length = 1039

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 71/686 (10%), Positives = 176/686 (25%), Gaps = 43/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +   +GL+  +        + ++P  +P               + +    
Sbjct: 9   RPIFANVIAIITVILGLVCFM-----NLPVAQYPPIVPPT-------------IQVTARY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++F            V  
Sbjct: 51  PGASAEVVANTVGIPIEQAVNGVENSLYMLSTSASDGSYTLTITFNVGTDLNTSTALVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    +   +         +++     +         S   +    + +   
Sbjct: 111 LVNSALPQLPDSVQPQGVNVKKVSTDILLVVGLYSEDDRFDDTFLSNYAVINLQNPLARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +P +LR L  TT  +       N        G   +  + 
Sbjct: 171 PGVGQIAVRGAGPYSMRVWLNPEKLRYLNLTTQDVVNAIQSQNLQVVAGQLGGPPIPANQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V     ++           D    + +V  S     A+         +       
Sbjct: 231 TFQFTVNAMGRLA-----------DVGQFENIVIKSTRSESAQIVRIRDVARVELSRQSY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +    +               +     E      A +     P     +          
Sbjct: 280 SNFSESSGHKATVMPVFTLPGANALSVAEEVKKAMATMSKDFPPGLKYEIHYDTTKFVRS 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LVLIV+ + +   +  LV   +I + +I + A +S+LG  + L ++
Sbjct: 340 AIHDVYITLFEAGLLVLIVVVVFLQNWRATLVPATTIPVTLIGSFAAMSMLGFGINLLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT---ALIAT 474
             ++L IG+ VD  I++ E       +  +   +           I    +      +  
Sbjct: 400 FALILAIGIVVDDAIVIVENASYHIEQGLAPKEATIKAMQEITGPIMGITLVLTSVFLPA 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSR 530
             L    G   R FA+ +  + +IS   A+++               +          + 
Sbjct: 460 AFLPGITGQLFRQFALVIASTAIISAINALTLKPTQCALWLRPVQDKQVNWFFRGFNKAY 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            FL    + +     +     + +   I  +          G          ++  +  D
Sbjct: 520 GFLERAYVRLVTWMVQRAVAMVLLYMLIIVLSAWRFAYHPTGFLPTEDQGYAMVITQLPD 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM--VKKKITEIVPL 648
            S         Q  +       G + ++        D    + ++    V    ++    
Sbjct: 580 ASSQPRVTAVTQSLNEILHKTQGVEAWVTIGGLSILDGANVSNIVTTFIVFDDWSKRGAD 639

Query: 649 STIQNTEIVGPKISRELIRKGIVGVI 674
            +         +    L   G + ++
Sbjct: 640 LSQDAITANLRRDLTPLEESGSLVLV 665



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 76/213 (35%), Gaps = 12/213 (5%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             S     ++E +   +           T     ++  +     I  + I+ + M++   +
Sbjct: 833  SSGQALNLMEQLANNVLPKGMSFDWTATSFQEKQVGNQAYF--IYALSITLVFMVL-AAL 889

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               W   L  +  + + +   L    + G + NL     ++ +IG +  + +++ +  R 
Sbjct: 890  YESWTSPLAVVLVVPMALVGVLLALMMRGFDNNLYTQVGLILMIGLACKNAILIVEFAR- 948

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMAF 803
              +L    +S  +   ++        V TS A  + V+P+      G +   +    +  
Sbjct: 949  --QLQAEGMSVTEAAVEATRRRFRPIVMTSFAFILGVVPLLGASGAGAASQQAIGTVVFG 1006

Query: 804  GIVVAASSSIFIAAPILLF---IYDWRAKNARI 833
            G++ +   +I     + +    +  W    +++
Sbjct: 1007 GMLSSTLLAIPFVPVLYVMTQRLATWATDRSKL 1039



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L   TT+ + +  +    ++ G   NL  + A++  IG  V+D +V+     +N  
Sbjct: 366 WRATLVPATTIPVTLIGSFAAMSMLGFGINLLTLFALILAIGIVVDDAIVIV----ENAS 421

Query: 750 LY-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    ++ ++   K++ E  G  +  ++      LP A      G +   FA+ +A   
Sbjct: 422 YHIEQGLAPKEATIKAMQEITGPIMGITLVLTSVFLPAAFLPGITGQLFRQFALVIASTA 481

Query: 806 VVAASSSI 813
           +++A +++
Sbjct: 482 IISAINAL 489


>gi|239815545|ref|YP_002944455.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Variovorax paradoxus S110]
 gi|239802122|gb|ACS19189.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Variovorax paradoxus S110]
          Length = 1091

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 79/704 (11%), Positives = 178/704 (25%), Gaps = 37/704 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P   P + +                  
Sbjct: 10  RPIFAGVLSLLILIAGLIA-----LRGLPISEYPEVAPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D +   E   
Sbjct: 116 AEPRLPEEVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   + + +       N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    A      
Sbjct: 236 SINAQGRLQSEE-------------EFGDIIVKSGTDGAVTRLRDIGRLEMGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +            A L           +          S   
Sbjct: 283 LLNNDPAVGMGVFQAPGSNALDISSNVRKTMAELNKNMPEGLEYRIAYDPTQFVRASIES 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++VI T A+L +LG ++   S+ G+V
Sbjct: 343 VIHTLLEAILLVVLVVILFLQTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   ++R        +       F  +  
Sbjct: 463 GLTGQFYRQFAVTIAISTVISAINSLTLSPALAALLLRGHDQPKDALTRGMDKAFGWLFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                F R      G           +L  +    G+ F     +          +  + 
Sbjct: 523 GFNKLFSRGAEAYSGGVKGVISRKTLMLVIYLALIGVTFGLFKAV----PSGFVPAQDKQ 578

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L               ++      +    +   +  +              ++      
Sbjct: 579 YLIGFAQLPDGATLDRTDEVIQRMGEIMKKNPNVEDAIAFPGLSINGFTNSSNSGIVFAT 638

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           + P   R+   +    V          I   F   F    +  L
Sbjct: 639 LKPFDQRKRADQSGGAVAGQLNGAFASIQDAFIVMFPPPPVAGL 682



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/263 (10%), Positives = 86/263 (32%), Gaps = 12/263 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
             +  G +++       V LS +     +         N     +             AQ 
Sbjct: 790  AEDVGMLKVRSTTGEMVPLSALMKVNSTFGPERAMRYNGYLAADINGGPAPGYSSGQAQD 849

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             + ++  + + + V                        +   ++ + + + +  +++   
Sbjct: 850  AITKIAAETLPKGVSF-----EWTELTYQEILAGNSAFLVFPLAILLVFLVLAAQYESLT 904

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  I  + + I   +    + G + N+     ++ L+G S  + +++ +  R+   L 
Sbjct: 905  LPIAIILIVPMGILAAMTGVWISGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE---LE 961

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                +      ++    L   + TS+A  + VLP+ +    G  +  +  + +  G++  
Sbjct: 962  FAGRTPIQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGVAVFAGMIGV 1021

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
             +  +F+     + +       A
Sbjct: 1022 TAFGLFLTPVFYVLLRRLAGNRA 1044



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 83/232 (35%), Gaps = 17/232 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L +     +      G     +    +   +     + E ++ +I 
Sbjct: 270 RLEMGAADYSLRSLLNNDPAVGMGVFQAPGSNALDISSNVRKTMAELNKNMPEGLEYRIA 329

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   ++   +V ++               W  ++  +  + + 
Sbjct: 330 YDPTQFVRASIESVIHTLLEAILLVVLVVILFLQT-----------WRASIIPLLAVPVS 378

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T     + G   N  ++  ++  IG  V+D +VV + + +N++     ++ R+   +
Sbjct: 379 VIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEA---GLTPREATYR 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           ++ E  G  +  ++      +P+A      G     FA+ +A   V++A +S
Sbjct: 436 AMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTVISAINS 487


>gi|300716624|ref|YP_003741427.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Erwinia
           billingiae Eb661]
 gi|299062460|emb|CAX59577.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Erwinia
           billingiae Eb661]
          Length = 1053

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 64/553 (11%), Positives = 151/553 (27%), Gaps = 35/553 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFVSGLIAI-----PLLPISEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSIAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++   +       ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRQGVTTQKQSPTMTLVVHLDSPSGRYDSLYLRNYAQLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T   +       N        G   + +    
Sbjct: 174 VGQVQIFGAGEYAMRIWLDPTKVAARGMTAGDVVSAIQEQNVQVSAGQLGAEPMPNKSDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I       +         I         
Sbjct: 234 LLSINAQGRLQNEE-------------EFGNIILKSGEDGQIVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQAPGANAIDLSNAVRAKMAELATRFPDGVEWKAPYDPTIFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 SSVLHTLLEAILLVVLVVILFLQTWRASIIPLLAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +      +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLEPRAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++    K      +        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAALLLKPHDAKKDRTTRIIDALFGWL 520

Query: 537 CIAIQFMRARFWG 549
                    R   
Sbjct: 521 FRPFNRFFNRNSA 533



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 52/144 (36%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L     +      ++    L   V TS+A     +P+ +    G  V     I +  G+
Sbjct: 958  -LEMQGRTIVQAALEACRLRLRPIVMTSIAFIAGTIPLMLGHGAGAEVRTVTGITVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +      +F+     + +     K
Sbjct: 1017 LGVTLFGLFLTPVFYVALRKLVKK 1040



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++   
Sbjct: 371 PL---LAVPVSVVGTFSILYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIEE-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +  R    +++ E  G  +  ++      +PMA   G        FA+ +A   V++A
Sbjct: 426 -GLEPRAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 INS 487


>gi|222087630|ref|YP_002546167.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
 gi|221725078|gb|ACM28234.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
          Length = 1045

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 85/685 (12%), Positives = 197/685 (28%), Gaps = 41/685 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        + ++P   P              +      +
Sbjct: 8   RPIFAWVIAIVIMLAGALSIL-----TLSISQYPQIAPTTV---------SINATYSGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +     +   S       I+L+F +    +    +V   LQ 
Sbjct: 54  AATVENSVTKVIEQGMTGIDNLDYMTSTSTSTGSASISLTFTNKADPDVAQMQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    +   +V +      +++          ++ + +  +     D +   E   
Sbjct: 114 VTAQLPQTVQTTGIVVSKSTANFLMVVGFVSTDGKLNSNDLADYVSSTLNDTLKRIEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +     + ++      N+       G    R       
Sbjct: 174 NTQIFGAG-YAMRVWVDPDKLAKYQLMVSDVTTAIQAQNSQVSAGQLGALPQRKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +                 +    I                 +    +      
Sbjct: 233 TVTAKSRL-------------QTPEQFNNIILKSLPDGSLVRLNDVATVELGASSYTTSS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   T E        +R    P    +           S   
Sbjct: 280 TYNGHPSAGLAVMLASGANAINTAEAVRSTIDSVRQTLPPNVEIVYPYDTTPFVKLSIED 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  L+   ++ + ++ T  +LSL G ++   ++ G+V
Sbjct: 340 VVKTLFEAIVLVFIVMFVFLQNIRATLIPTLAVPVVLLGTFGVLSLFGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +      +  S   +            I  + + + +   + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEGLSPREATIKSMQEITGALIGIATVLSAVFIPMAFF 459

Query: 480 FG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G  G   R F++T+  ++++S+  A+ +  A+   I++  +  S        F    + 
Sbjct: 460 SGSVGVIYRQFSVTIVSAMILSVIVALILTPALCATILKAPEHGSKQRGAFGWFNRNFER 519

Query: 538 IAIQFMRARFWGVGISILFSICSI--------CLLFTHGLNYGIDFKGGIQLGVLANRPV 589
             +++  +    +  S +F +  +                    + +G +   +      
Sbjct: 520 ATLRYQSSIHGMIRWSAVFLLIFVLIGGAVAYLFNRLPSSFLPDEDQGILLTAIQLPPGA 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S   + L  ++   ++ +    E  F V      G       V   +K       P S
Sbjct: 580 ADSRTWAVLNQVKDYYLNNEKDYVEGAFAVAGFGFSGQGQNVGIVFVRLKDFAERSTPQS 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
             Q           ++    +  + 
Sbjct: 640 KAQAIAGRAMGAFSKIKDGSVFALA 664



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 80/199 (40%), Gaps = 8/199 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               + A    ++ V++ +   V +    +T         ++++     +++  I M ++
Sbjct: 299 AINTAEAVRSTIDSVRQTLPPNVEIVYPYDTTPFVKLSIEDVVKTLFEAIVLVFIVMFVF 358

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +         L     + + +  T G  +LFG   N   +  ++  IG  V+D +VV + 
Sbjct: 359 LQ---NIRATLIPTLAVPVVLLGTFGVLSLFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 415

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           +     +    +S R+   KS+ E  G  +  +       +PMA + GSV      F++ 
Sbjct: 416 V--ERVMEEEGLSPREATIKSMQEITGALIGIATVLSAVFIPMAFFSGSVGVIYRQFSVT 473

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   ++++   ++ +   +
Sbjct: 474 IVSAMILSVIVALILTPAL 492



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 88/271 (32%), Gaps = 13/271 (4%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                    +  G   +       V  S   S       G    + ++G     ++    P
Sbjct: 772  YQDFRMQPEDFGRWYIRNSGGDMVPFSAFSS--GEWTYGSPRLERYNGSSAVEIQGAAAP 829

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
            G S                        +          +  +   + +++  +A+     
Sbjct: 830  GVSSGDAMNEIDQIMATLPPGFSHEWTSLSAQEKLSGNQASQLYAISILVVFLALA---A 886

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +   W   L  + ++ + I   L    +FG   ++     +LT IG +  + +++ +   
Sbjct: 887  LYESWSIPLAVMLSVPIGIFGALLAATIFGQSNDVYFKVGLLTTIGLAAKNAILIVEFAI 946

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
            +      +  +  D   ++  + L   + TS+A  + V+P+A+    G     S  I + 
Sbjct: 947  E---QQNSGKNLIDATLEASRQRLRPILMTSLAFILGVMPLAIANGAGSGSQNSIGIGVM 1003

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G++ A    +F     LLF+   R    ++
Sbjct: 1004 GGMISATVLGVFFIP--LLFVSVRRIFKGKV 1032


>gi|260223048|emb|CBA33221.1| Acriflavine resistance protein F [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 1051

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 80/630 (12%), Positives = 174/630 (27%), Gaps = 51/630 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G +        Q  + ++P   P               +V+    
Sbjct: 8   RPIFAWVISLFILVMGGVAI-----TQLPISQYPPVAPP-------------SIVVNTAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +    G+              ITL+F      +     V  
Sbjct: 50  PGASAQTLEDSVLSVIEREMNGSPGLIYMESVAQADGSGSITLTFETGTNPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L     +  +     +   ++ +  + D   +  IE      R  + ++   
Sbjct: 110 RLSRATPRLPAAVTQQGVRVDKSRSNFLMFTMLSSDNPETSTIELGDYASRNIVPELQRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L     +TA+++      N        G        
Sbjct: 170 PGIGQAQLFGT-ERAMRIWLDPAKLASFNLSTAEVNSAISAQNAQVSAGAIGDLPNITGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K +++ +              +                      I       
Sbjct: 229 SIAATVVVKGQLASVA-------------QFGNIALRSNADGSAVRLKDVARIELGAQAY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +        L+A         +   +      
Sbjct: 276 ATSARLNGKPAIGIGVQLAPSGNAMAAAKAVRARMTELQAYFPKGMSWSIPYDSSRFVNI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ ++    + + ++ T A L  LG ++ + ++
Sbjct: 336 SIKQVAETLVEAVVLVFLVMFLFLQNWRYTIIPTIVVPVALLGTFATLLALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +    I    +  +   V 
Sbjct: 396 FGMVLVIGIVVDDAIVVVENVERIMSEEGLPPLQATKKAMGQISGAIIGVTVVLIAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSI 523
           L FF    G   R F+  M  SI  S F A+S+  A+   +++                 
Sbjct: 456 LAFFAGSVGNIYRQFSAVMVSSIAFSAFLALSLTPALCATLLKPVEAGHAHAKTGFFGWF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    S        +A    +A  + V    + +  ++  L         + +G I + V
Sbjct: 516 NRRFDSTAKGYESLVARLLKKAGRYLVIYVAIIAGVAVVYLRLPTSFLPGEDQGNIIVNV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                         +E ++   +     +G
Sbjct: 576 QLPPGATQQRTLKVMEQVEGFILKQPEVEG 605



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 63/207 (30%), Gaps = 9/207 (4%)

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            +    ++G     +     PG S  +                            K   + 
Sbjct: 810  MQTVRYNGYSAVRISGAAAPGFSTGEAMAEMEQLAAKLPEGFGFEWTGQSREEKKAGSQA 869

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                   ++   + +     +   W   L  I  + L +   +      G   ++     
Sbjct: 870  TVLYAFAILAVFLCLA---ALYESWSIPLAVILVVPLGVFGVVLATLFRGYANDVYFQVG 926

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++T+IG S  + +++ +  +    L     S  +    + +      V TS+A  + VLP
Sbjct: 927  LITIIGLSAKNAILIIEFAKD---LQAQGKSVIESALSAAHLRFRPIVMTSLAFMLGVLP 983

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAA 809
            +A+    G +   +    +  G+V   
Sbjct: 984  LAIASGAGSASQRAIGTGVIGGMVAGT 1010



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q    S +        +       G+++A  + +     ++    P 
Sbjct: 260 VRLKDVARIELGAQAYATSARLNGKPAIGIGVQLAPSGNAMAAAKAVRARMTELQAYFPK 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I++    ++ + + + + +++  + W + +     + + +  T
Sbjct: 320 GMSWSIPYDSSRFVNISIKQVAETLVEAVVLVFLVMFLFLQNWRYTIIPTIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++ +IG  V+D +VV + +     +    +       K++ +
Sbjct: 380 FATLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENV--ERIMSEEGLPPLQATKKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +P+A + GSV      F+  M   I  +A  ++ +   +   + 
Sbjct: 438 ISGAIIGVTVVLIAVFVPLAFFAGSVGNIYRQFSAVMVSSIAFSAFLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|303256619|ref|ZP_07342633.1| RND efflux system, inner membrane transporter CmeB [Burkholderiales
           bacterium 1_1_47]
 gi|302860110|gb|EFL83187.1| RND efflux system, inner membrane transporter CmeB [Burkholderiales
           bacterium 1_1_47]
          Length = 1029

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 83/679 (12%), Positives = 194/679 (28%), Gaps = 34/679 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GLL           + ++P   P                  E  
Sbjct: 8   RRPIFASVMSILIVIAGLLAG-----RVLPMGQYPDITPPVVF---------ISTSYEGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   +   +    ++  S ++       S+R   N +IT +F       +   ++   ++
Sbjct: 54  DAQTLAKTVAAPIEDQLSGVEGLLYYETSIRSNGNVRITCTFEVGTNPNDAMLEINNRVR 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L    ++N +      E ++++            I+ +  +    +D I      
Sbjct: 114 SAERRLPESVRQNGVNVRKRSEETLMIVPFYSPNGTLKPIQLADYVNLNVVDAIKRVPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P ++ QL  T   +       NN       G     D     
Sbjct: 174 GDADVFGNAQSAMRIWLNPKKMAQLGITAIDVRKAIEEQNNQYAAGKVGTSPTTDDQQLV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +  K ++                 +                      +          
Sbjct: 234 YTIRTKGQL-------------LTPEEFGNITVRSRGADGIVRIHDIARVEVGNRSYEAY 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +   T          L          ++ + N      + +
Sbjct: 281 NQLNDVPSVTFAVYLQTGANAMQTAVDVKKRLQELSKNFPDDIAYVITDDNSRFVEAALN 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LVL+V+++ +   +  L+   ++ +++I TLA L  L  +L   ++  +
Sbjct: 341 EVVQTLLEAGLLVLLVVYLFLQNWRATLIPMLAVPVSLIGTLAGLWALNFSLNTLTLFAM 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIATVV 476
            L IG+ VD  I+V E +       + + F +          A   I     T       
Sbjct: 401 TLAIGIVVDDAIVVLENVERIMETEKLNAFQASQKAMKEVAGALVAIVLVLSTVFTPVAF 460

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLI 534
           L    G   R FA+T+G+S+++S F A+++  A+   +   + K  K   +         
Sbjct: 461 LGGIAGELYRQFAVTIGVSVVLSGFVALTLTPALCAILLRNKSKPFKIFRLFNDGFERFK 520

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            + I       R      +IL ++   C  F   +      +    +  +A +  + + +
Sbjct: 521 LNYIKGVSFNLRHRWFTAAILVAVTVGCWEFLQIVPTSFVPREDQGILRVAIQLPEGATL 580

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                 +       +     +N    +      +  ++    ++ +         + +  
Sbjct: 581 NRTGVVVTDLSREIRKIPEVENVTALVANDTIANDTKSNAASLIVQLKPWDQRTRSAETI 640

Query: 655 EIVGPKISRELIRKGIVGV 673
                 +           V
Sbjct: 641 RRQLQTLVNARTDAVGQAV 659



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 7/186 (3%)

Query: 651  IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLG 709
                        + +            I + + +  +F +W   +  +  +   +   L 
Sbjct: 847  YYVDWTGQAFHEKRIGSSSAAAFAFGLIIVFLILAAQFERWSLPIAVVMAVPYSVLGALV 906

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 G   ++     +L LIG +  + +++ +      +     +  R    ++    L
Sbjct: 907  ATYFRGFSNDIYFQIGLLVLIGLTAKNAILIVEFA---AQKMEEGMEARQAALEAAKLRL 963

Query: 770  GRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               V TSMA  + V+P+A   G+      S    +  G++ A   + F       +    
Sbjct: 964  RPIVMTSMAFILGVIPLATATGAGAAARQSMGTGVLGGMLAATFITTFFIPVFFTWFVSK 1023

Query: 827  RAKNAR 832
            + K  R
Sbjct: 1024 KIKTRR 1029



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 5/147 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRK 746
           W   L  +  + + +  TL          N   + A+   IG  V+D +VV    +R+ +
Sbjct: 364 WRATLIPMLAVPVSLIGTLAGLWALNFSLNTLTLFAMTLAIGIVVDDAIVVLENVERIME 423

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             KL     S +  + + +   L   V      F  V  +    G +   FA+ +   +V
Sbjct: 424 TEKLNAFQAS-QKAMKE-VAGALVAIVLVLSTVFTPVAFLGGIAGELYRQFAVTIGVSVV 481

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ +   +   +   ++K  +I
Sbjct: 482 LSGFVALTLTPALCAILLRNKSKPFKI 508


>gi|300024225|ref|YP_003756836.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299526046|gb|ADJ24515.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 1059

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 65/516 (12%), Positives = 138/516 (26%), Gaps = 31/516 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +GL+           +  +P   P              H       
Sbjct: 10  RPIFASVVSLIITILGLISV-----NFLPIAEYPEIAPPTV---------SIHATYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +                 I++ F      +     V   +  
Sbjct: 56  AQVIAETVATPIEQEVNGVDDMLYINSQSTGDGQVTISVIFKPGTDVDQAQVLVQNRVSV 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  +         +++               S        D +   +   
Sbjct: 116 AEPRLPEDVRRLGISVRKASPDLMMVVHMVSPDGTRDQQYISNYATLYVKDVLTRIDGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N                     
Sbjct: 176 DVNVFGARDYSMRIWLDPDKMSSRGLTAGDVVAALQAANLQVAAGSINQPPATSDGAFTL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+    +                 +    +   E G +         +           
Sbjct: 236 NVQTLGRLKATS-------------EFEDIVVRAEPGGQVIRVRDIARVELGAQDYTVNA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +   K   +   T         +L+    P     V          S   
Sbjct: 283 YLDNRNATALVLFQKPGSNALATASAVKQQMELLKKSFPPGLDYTVVYNPTEFIQFSIDA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV++V+ + +   +  ++   +I +++I T  ++SLLG T    S+ G+V
Sbjct: 343 VVKTLAEAILLVVLVVILFLQTWRAAIIPILAIPVSLIGTFFIMSLLGITFNTLSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E +     +  S   +          A   I    I   + T  + 
Sbjct: 403 LAIGIVVDDAIVVVENVERYIEQGMSPKAAAHKTMDEVGTALIAISLVLIGVFLPTAFIT 462

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   + FAIT+  S  +S+  ++++  AM   +
Sbjct: 463 GLQGTFFKQFAITIAASTALSLIVSLTLSPAMAALL 498



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/169 (11%), Positives = 63/169 (37%), Gaps = 7/169 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               I+   +S + + + +   ++ W   L  I  + + I   +    + G++ N+     
Sbjct: 882  NTAILAFGLSVVFVFLLLSALYESWMLPLSVILIVPMCILAAMIGVNIRGLDRNILVEIG 941

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G +  + +++ +  +   +     +S  +   ++    L   + TS+A  + V+P
Sbjct: 942  LIVLVGLAAKNAILIVEFAK---QGEDQGLSRSEAAVEAARTRLRPILMTSLAFILGVVP 998

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +  S    +  G++      +       + +     +  
Sbjct: 999  LVFAEGAGAEMRQSLGTAVFSGMLGVTLFGLIFTPVFYVVVRKLSPRPR 1047



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 56/133 (42%), Gaps = 10/133 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  A+  I  + + +  T    +L GI FN  ++  ++  IG  V+D +VV + +    +
Sbjct: 365 WRAAIIPILAIPVSLIGTFFIMSLLGITFNTLSLFGLVLAIGIVVDDAIVVVENV---ER 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                +S +    K+++E     +  S+      LP A      G+    FAI     I 
Sbjct: 422 YIEQGMSPKAAAHKTMDEVGTALIAISLVLIGVFLPTAFITGLQGTFFKQFAIT----IA 477

Query: 807 VAASSSIFIAAPI 819
            + + S+ ++  +
Sbjct: 478 ASTALSLIVSLTL 490


>gi|320536403|ref|ZP_08036442.1| protein-export membrane protein SecF [Treponema phagedenis F0421]
 gi|320146745|gb|EFW38322.1| protein-export membrane protein SecF [Treponema phagedenis F0421]
          Length = 410

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 67/241 (27%), Positives = 123/241 (51%), Gaps = 3/241 (1%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D   +R  L S+    +       +  F +RL        A   + +M+   + +     
Sbjct: 153 DADEIRHALASVPSASVQQVGLPTDHTFQIRLADDGTHENAGEELRQMINSALGKAYGED 212

Query: 650 TIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            I   +T+ VG + S  L R+  + V+ + + + +Y  IRF+W FA GAI  LI D    
Sbjct: 213 NIAVLSTDFVGSRFSNSLARQAFLLVMGALVLIFLYAAIRFQWRFAFGAILALIHDALIM 272

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           + F     +EFN T +AA+LT+IGYS+ND VVV+DR+R+N+++    I+  D+++ S  E
Sbjct: 273 ITFIVWTQMEFNSTTIAAILTIIGYSINDTVVVFDRIRENIRINPK-ITTVDILNLSQTE 331

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            L R++ T++   ++VL + ++    +  F+  +  G++    S++FI +  + F    +
Sbjct: 332 VLSRTIVTTITTMLAVLMLYIFTSGSMRDFSAALLVGMLSGVYSTVFITSAFIAFTGKNQ 391

Query: 828 A 828
            
Sbjct: 392 R 392


>gi|21244051|ref|NP_643633.1| acriflavin resistance protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21109672|gb|AAM38169.1| acriflavin resistance protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 1041

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 77/678 (11%), Positives = 184/678 (27%), Gaps = 43/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P               +      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  SR  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDALAGIEGISTIEARSRNGSSDISIEFVQSRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARPPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARELTVADVEAALQNENVELPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLNKGEGGYVVRLGDVARVELTSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +       A   A  ++          V          +    
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVAREARAQAEEVQKSLPKGTNIFVAFDTTTFIDAAVERV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LVL+V+++ +   +  L+   ++ + +I     L     ++ L ++  +VL
Sbjct: 335 YHTLVEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E I+      +    +   G  +    +  +    +   + + F  G
Sbjct: 395 CIGLVVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP---- 535
                 R  A+ +  ++ IS F A+++   M   ++R       +         +     
Sbjct: 455 NTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRAHGQAKPNRFHHWFDGRMQAVSG 514

Query: 536 -DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +++    R W   + +L ++ +   L     +     +      ++ + P      
Sbjct: 515 AYGRSLERHVHRTWIFALLMLLALGASAWLMGRIPSELAPAEDRGNFQIMIDGPEGAGFD 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +  +  Q+ DI       +K  +      PG   +   +         +     T   T
Sbjct: 575 YTVGQMHQVEDILRPYVGPDKPIVRANPRVPGGFGSSEEMHTGRVSVFLQDWEKRTRPTT 634

Query: 655 EIVGPKISRELIRKGIVG 672
           E+      +  +  G+  
Sbjct: 635 EVADEVQQKLNVLSGVRA 652



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 859  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     S    I +S +  L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDEGRSVHAAIVESASVRLRPILMTSIATVVGAIPLVV 975

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GG       +  + + FG+ ++   S+++       I  +      +
Sbjct: 976  AGGPGSASRATIGVVVIFGVSLSTLLSLYVVPAFYSLIAPFTKSPEAV 1023



 Score = 43.5 bits (100), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 3/107 (2%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL    T+ + +         F    NL  + A++  IG  V+D +VV + +    + 
Sbjct: 357 RAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENI---QRR 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                       +   +     + T+       LP+    G+    F
Sbjct: 414 IDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEGNTGRLF 460


>gi|30248192|ref|NP_840262.1| multidrug resistance protein MexB [Nitrosomonas europaea ATCC
           19718]
 gi|30180077|emb|CAD84079.1| multidrug resistance protein MexB [Nitrosomonas europaea ATCC
           19718]
          Length = 1064

 Score =  177 bits (448), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 82/680 (12%), Positives = 182/680 (26%), Gaps = 37/680 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +GL+      L    + +FP   P   + +  D  G          
Sbjct: 9   RPIFASVLSIIIVIVGLVS-----LKNLPIAQFPEITPP-VVQIDADYPG--------AS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +     +        +        + L+F      +    +     + 
Sbjct: 55  ADVVAEAVARPIEVQLPGIDNLLYYESTSTNDGHMTMRLTFEIGTDIDIAQVQTQNRQKL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  +         +++   +        I  S   + + +D I       
Sbjct: 115 AEPQLPDEVIRQGITVKKTSPDLLLVVALSSTDPSHDTIFLSNYALLRVLDNIKRLPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP R+ QL  T + +       N        G   + +      
Sbjct: 175 DASIFGGQNYSMRLILDPVRMAQLNFTPSDIVAAVREQNRDFPAGRIGREPMVNETELTI 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +S             +  +    I                 +           
Sbjct: 235 PVMTKGRMS-------------EVKEFEEMIIRAYPDGSMVRLKDVSRVELGAQSYDLQA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +       +   T +        L           V          S   
Sbjct: 282 RWNGRPNTFLLTYLSPGANALETAQRIRNEMDKLAKDFPAGASYDVPYDTTTFIEVSIQE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV++V+F+ +   +  L+   +  +++I T   +  LG ++   ++ G+V
Sbjct: 342 VVKTLAEALLLVVLVVFIFLQSWRATLIPAIAAPISLIGTFMGMEALGFSINTLTLFGMV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E +     +  +   +          A   I     +  +    L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHIAEGLTPKNAAIKAMQELFGALIAIILVLASVFLPVAFLG 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRFF 532
              G   + FA+T+ LS++IS F A+++  A+   +++          K+ +        
Sbjct: 462 GITGELYKQFAVTIALSVMISGFVALTLSPALCALVLKPGHDSPNKLWKTFNRTFDWAQT 521

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R+    +   ++            G     + +G     V       +S
Sbjct: 522 RYVSMAGTIIKRSALSILIFLMVIFFAIGLFKTVPGGFLPEEDQGYFITVVQLPDGASIS 581

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             +  LE ++   +S  +                       +   +    T       +Q
Sbjct: 582 RTQKVLEKIESYFLSIPSVHSTDAMAGMNFVFSSRGPNHATMFVPLHHWDTRKNADEQVQ 641

Query: 653 NTEIVGPKISRELIRKGIVG 672
           N          ++    ++ 
Sbjct: 642 NLIANAFGEFAKIPEALVLA 661



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 79/252 (31%), Gaps = 10/252 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +  + L  V +   +     ++  N       L           A   + E+  + + 
Sbjct: 792  TTSTMIPLDSVVTTEFNSGPDPVTHFNGFNSALVLGSAAPGYSSGQALDALQEVANEVLA 851

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                              +       I  +  + + + + +   ++ W      I  +  
Sbjct: 852  PKGYTIDWSGITYQEKMAASGQK---IWILSFALLMVFLVLAALYESWSVPFAVILAVPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L      G+  ++     ++TLIG S  + +++ +       LY    S  +   
Sbjct: 909  GILGALLAIWARGLTDDIYFQVGLITLIGLSAKNAILIVEFA---SDLYAKGASLTEAAL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++        + TSMA  + V P+A+    G +   +    +  G++ A   +IF     
Sbjct: 966  EAARVRFRPIIMTSMAFIMGVFPLAISSGAGAASRIAIGTTVLGGMLAATFLAIFFVPLF 1025

Query: 820  LLFIYDWRAKNA 831
             + I     ++ 
Sbjct: 1026 FVLIGKITRRDK 1037


>gi|254695447|ref|ZP_05157275.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           3 str. Tulya]
 gi|261215830|ref|ZP_05930111.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           3 str. Tulya]
 gi|260917437|gb|EEX84298.1| hydrophobe/amphiphile efflux-1 family protein [Brucella abortus bv.
           3 str. Tulya]
          Length = 1074

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 62/547 (11%), Positives = 154/547 (28%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAAGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++G               +    I                 +   +   
Sbjct: 231 QIQLTLTTQGRLTGA-------------KQFENIIIRANPDGSSVRLKDVARVELAVQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|221196021|ref|ZP_03569068.1| OqxB [Burkholderia multivorans CGD2M]
 gi|221202695|ref|ZP_03575714.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia multivorans CGD2]
 gi|221176629|gb|EEE09057.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia multivorans CGD2]
 gi|221182575|gb|EEE14975.1| OqxB [Burkholderia multivorans CGD2M]
          Length = 1057

 Score =  177 bits (448), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 64/585 (10%), Positives = 157/585 (26%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  +I  +GL+       P      +P  +P + +                  
Sbjct: 10  RPIFAVVLSIVIFALGLIAI-----PMLPAGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             + ++ ++F      +  A +V   +  
Sbjct: 56  PKEIAESVAEPLEEAINGVEGIMYMKSVAGSDGSLQVVVTFLPGVDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            ++     +     D++       
Sbjct: 116 ALSRLPDEVRQYGVTTQKQSPTPLMYVSLYSPDNSRDSLYLRNYLTLHVKDELSRLTGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL     T + +       N        G      +     
Sbjct: 176 DVGVYGSGDYAMRLWLDPNRLASRGLTASDVIAAVREQNVQVSAGQLGAEPTPKAHDFLV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +       +         I           
Sbjct: 236 SINVRGRL-------------RTAQEFGDIVLRTGDDGQVVKLSDVARIELGAGDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L     P                S   
Sbjct: 283 YFNDKHSAVVGIFLSPGANALDVAKAVYAKLDELSKRFPPGVAYRPVWDPTVFVRESIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+ V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G+V
Sbjct: 343 VQHTLIEAVVLVVFVVILFLQTWRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+ VD  I+V E +     +  S   +           I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAQGLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFLS 462

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS   ++++  A+   ++         +       F  +  
Sbjct: 463 GVTGQFYKQFAVTIAISTVISAINSLTLSPALAAKLLHPHGAPKDALTRALDRGFGWLFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R+     G+          +   +             +
Sbjct: 523 PFNRFFERSSDRYHGVVARTLKRRGAVFAVYAALLAATALLLHAV 567



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 6/137 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  +  L G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S RD   +++ E  G  V  ++      +PMA   G        FA+ +A   V
Sbjct: 425 Q---GLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTV 481

Query: 807 VAASSSIFIAAPILLFI 823
           ++A +S+ ++  +   +
Sbjct: 482 ISAINSLTLSPALAAKL 498



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 82/247 (33%), Gaps = 11/247 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V +  + + + +     +   N     + +     +   S      LE + K +    
Sbjct: 801  EMVPIGSMVTVVPAYGPDPVVRYNGYPAADLIGDTDPKTMSSSQAIAKLEQIAKDVLPPG 860

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                  +        S       IV   ++ + + + +   ++ W   L  I  + + + 
Sbjct: 861  ITLEWTDLSYQQVTQSN----AAIVVFPLAVMLVFLVLASLYESWTLPLAVILIVPVCMC 916

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L    L G + N+     ++ L+G +  + +++ +  R+   L        D   ++ 
Sbjct: 917  AALFGVWLSGGDNNVFVQVGLVVLMGLACKNAILIVEFARE---LEIQGKRTIDAALEAC 973

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   V TS+A     +P+ +    G  V  +  + +  G++      +F+     + 
Sbjct: 974  RLRLRPIVMTSVAFIAGSVPLLIGSGAGSEVRAATGVTVFAGMLGVTLFGLFLTPVFYVT 1033

Query: 823  IYDWRAK 829
            I     +
Sbjct: 1034 IRKLAGR 1040


>gi|218779038|ref|YP_002430356.1| preprotein translocase subunit SecF [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760422|gb|ACL02888.1| protein-export membrane protein SecF [Desulfatibacillum
           alkenivorans AK-01]
          Length = 347

 Score =  177 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 153/342 (44%), Gaps = 48/342 (14%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPV 589
              I   I I  +  RF+    S +    S+  L  HG    G+DF GG ++        
Sbjct: 1   MEWIKPGINIDIIGKRFFAYAFSGILIAVSLVSLVMHGGPKMGVDFAGGAEMIFKFETLP 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               VRS L ++ +   + Q    E      ++    D        ++       +    
Sbjct: 61  TAQEVRSALATIGLDKATVQETHVEGQTEFLIRTDVADGKGSDIAEQIEAVLEQTLGTGV 120

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW------------------- 690
            +   ++VGP++ ++L  + ++ +  + + + +YI  RF+                    
Sbjct: 121 ELGKVDMVGPQVGKDLKEQALMAMFYALLFITVYISGRFELKWIPPLVMALAIIGVAYFM 180

Query: 691 ---------------------------YFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
                                       +A+GAI  LI D+  T+G F+L G EFNL  +
Sbjct: 181 DKFDLGIPAQIAVALVIAVAGFWVLKLQYAMGAIVALIHDVIITVGVFSLVGKEFNLPII 240

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AA+LT++GYS+ND ++V+DR+R+N   ++       +I++SINET  R++ TS+   + V
Sbjct: 241 AALLTIVGYSLNDTIIVFDRIRENKTRHSRRA-LDFIINRSINETFSRTLLTSLTTLVVV 299

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + + ++GGS+I  FA  +  G+++   SSIF+A+PILL    
Sbjct: 300 VCLYLFGGSIIADFAFALLIGVLIGTYSSIFVASPILLAWQK 341


>gi|16265076|ref|NP_437868.1| putative acriflavin resistence protein [Sinorhizobium meliloti
           1021]
 gi|15141215|emb|CAC49728.1| putative acriflavin resistence protein [Sinorhizobium meliloti
           1021]
          Length = 1077

 Score =  177 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 71/686 (10%), Positives = 178/686 (25%), Gaps = 47/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+      L +  + +FP  +P               + +    
Sbjct: 9   RPRFAAVISIVLTLAGLIA-----LTRLPIAQFPDIVPP-------------QVSVTASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      L S +     +         +    +T++FA     +     V  
Sbjct: 51  PGAGADVVEATVAQPLESKVVGVDNMLYMKSTSGADGTYSLTVTFAVGTDPDIATVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  + K++ +         + +   + +      +  S       +D I   
Sbjct: 111 RVALAEPVLPAEVKQSGVSVQKRSSSLMQVIAIHGENDEFDNLFLSNYATINVLDTIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D  RL  L  T   +       N        G + + D  
Sbjct: 171 PGVGDATLFGAQDYSMRVVLDIDRLTNLGLTPTDVINALKTQNVQAAIGRIGAQPMTDDP 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  ++ +  ++                +    +   E             +       
Sbjct: 231 LFQLNIQTQGRLT-------------DPAQFEDVVLRAEPDGSFVRIRDVARVELGSVSA 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +    +           +     E        L A         V          
Sbjct: 278 DSTARINGKPVAMIGTYQAPGANALAATEGVQQAMNRLAAAFPEGLTYTVSYDTSDFVQA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV+IV+F+ +   +  L+   ++ + ++ T A++  +G +L   S+
Sbjct: 338 SVENVEHTLLEAFALVIIVVFLFLGNWRAALIPLIAVPVALVGTFAVILAMGFSLNTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E +          S   +  +        I    +  L   V
Sbjct: 398 LALVLAIGIVVDDAIVVVENVERVMEENPGMSAAQAARLAMGEITGAIVAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDIN 526
            + F  G +    + FA+ + +S++IS   A+++  A+   +++            I   
Sbjct: 458 PVAFIPGLSGQLFQQFAVAVSVSMVISAINALTLSPALCAILLKPHHGPKRGILGWISRG 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                            RA    + +++                   + +G     +   
Sbjct: 518 IDRTRNGYAHVAGSIARRAIIGVILLAVAIGASGWLFRIVPTGFLPSEDQGAFFAEIRLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +   + +  ++      +                    +    +  +K       
Sbjct: 578 EGASFNRTDAVVREVETMLGGIEGVANVTTVTGYSFLDGIAKSSSAFAIVTMKPFAERQD 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++             +    +  
Sbjct: 638 ESASVNAAIGTVMAKGAAIRNAQVFA 663



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 80/223 (35%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 + L  QP   ++  + L  +++     +P            +      +  ++  
Sbjct: 817  NNYRSITLNGQPAPGISSGQALAAMEQVSAATLPPGYSFEWTGTALQELEAAGQTTVILA 876

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +    A L  + +   W   +  + ++ + +   L    + G+ F++ A   ++ LI  +
Sbjct: 877  LALLFAYLFLVALYESWTIPIPVLLSVSVGVAGALVAVLVAGLSFDIYAQIGLVVLIALA 936

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +  +          +  D   +         + TS A  + ++P+    G+ 
Sbjct: 937  SKNAILIVEFAK---FQREKGATIVDAAVEGARTRFRAVMMTSFAFIVGLIPLVTADGAG 993

Query: 794  I---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +    +    +A G++ A+   IFI   + +     R +  ++
Sbjct: 994  MLSRRAVGTGVAGGMLAASLLGIFIIPALYVVFQWLRERGHKL 1036



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 87/246 (35%), Gaps = 11/246 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V          D + +        +   Q    +++A T  ++    ++    
Sbjct: 260 SFVRIRDVARVELGSVSADSTARINGKPVAMIGTYQAPGANALAATEGVQQAMNRLAAAF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWYFALGAITTLIL 702
           P               +  +      ++ +   ++I   + F     W  AL  +  + +
Sbjct: 320 PEGLTYTVSYDTSDFVQASVENVEHTLLEAFALVII---VVFLFLGNWRAALIPLIAVPV 376

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N  ++ A++  IG  V+D +VV + + + +      +S      
Sbjct: 377 ALVGTFAVILAMGFSLNTVSLLALVLAIGIVVDDAIVVVENV-ERVMEENPGMSAAQAAR 435

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++ E  G  V  ++      +P+A      G +   FA+ ++  +V++A +++ ++  +
Sbjct: 436 LAMGEITGAIVAITLVLLSVFVPVAFIPGLSGQLFQQFAVAVSVSMVISAINALTLSPAL 495

Query: 820 LLFIYD 825
              +  
Sbjct: 496 CAILLK 501


>gi|332995075|gb|AEF05130.1| acriflavine resistance protein B [Alteromonas sp. SN2]
          Length = 1032

 Score =  177 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 64/626 (10%), Positives = 153/626 (24%), Gaps = 41/626 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G+L           ++++P   P                      
Sbjct: 8   RPVFAWVLAIITMMAGVLAI-----YTLPIEQYPKVAPPTVT---------ITATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++  S +        S       I+L+F      +    +    +Q  
Sbjct: 54  AETVENSVTQVVEQNLSGIDNLRYFSASSSNSSMSISLTFEPGTDPDIAQVQTQNKVQAA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    ++  +          +      +       + S  ++ Q  D +        
Sbjct: 114 LPLLPAQVQQQGVTVAKSNSAFSLAIGFYDETGQMSQYDLSDLLVSQFRDSVSRVNGVGS 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                          DP +L     T   +     + N        G             
Sbjct: 174 VRVFGAQRSM-RIWLDPDKLYSYNLTPVDVQAAVEVQNTDVSAGQLGGLPAIQGQQINAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++ +  +                      +        +        +            
Sbjct: 233 IQAQSRL-------------QTVDDFESIVLRVNTDGSQVRVRDVARVELGAESYDVIVR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                 +    S  +  +   TI         LR         +           S    
Sbjct: 280 YDRHPASGMAISLASGANALDTINAVKQRVEELRVNLPDSVKVVYPVDASPFIELSIESV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+ + +   +  L+   ++ + ++ T A+L   G ++ + ++  +VL
Sbjct: 340 VHTLIEAVVLVFFVMLLFLQNWRATLIPTIAVPVVLLGTFAVLLAFGYSINVLTMFAMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLF 478
            IGL VD  I+V E +      +      +     ++       I     T  I      
Sbjct: 400 AIGLLVDDAIVVVENVERIMEEEGLPPAEATKKSMTQITGALVGIAAVLSTVFIPMAFFS 459

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R F+IT+  ++  S+  AI +  ++   +                  +     
Sbjct: 460 GSAGAIYRQFSITIVSAMGFSVLVAIILSPSLCATLLKQHDPEHDKDKGFFGWFNRTFNK 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                         RA+ +     IL +  +       G     + +G + + +      
Sbjct: 520 GRDRYQRTTTHMAKRAKRYFAVYGILVAGMAYIFAQLPGAFLPDEDQGRLMVLISTPPGA 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEK 615
                  +++  +   +  +      
Sbjct: 580 TAGRTLESVKKAEDFFLDHEQSAVNG 605



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 88/282 (31%), Gaps = 15/282 (5%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +               +          + +  N       VR         +        
Sbjct: 221 LPAIQGQQINATIQAQSRLQTVDDFESIVLRVNTDGSQVRVRDVARVELGAESYDVIVRY 280

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGI 670
           +++    +             +  VK+++ E+          +     S  +   I   +
Sbjct: 281 DRHPASGMAISLASGANALDTINAVKQRVEELRVNLPDSVKVVYPVDASPFIELSIESVV 340

Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +I + + +   + +  + W   L     + + +  T      FG   N+  + A++  
Sbjct: 341 HTLIEAVVLVFFVMLLFLQNWRATLIPTIAVPVVLLGTFAVLLAFGYSINVLTMFAMVLA 400

Query: 730 IGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           IG  V+D +VV    +R+ +        +   +   KS+ +  G  V  +       +PM
Sbjct: 401 IGLLVDDAIVVVENVERIMEE-----EGLPPAEATKKSMTQITGALVGIAAVLSTVFIPM 455

Query: 787 AVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           A + GS   +   F+I +   +  +   +I ++  +   +  
Sbjct: 456 AFFSGSAGAIYRQFSITIVSAMGFSVLVAIILSPSLCATLLK 497



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 80/253 (31%), Gaps = 9/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V       ++           G    + F+G  +  ++     G S  +           
Sbjct: 786  VRNADGDMVAFSTFASTEWVYGSPKLERFNGISSVNIQGSPAEGISSGEAMEEMEKLVAQ 845

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                             +   +      + ++I  + +     +   W      +  + L
Sbjct: 846  LPDGYAIEWSGLSFEEQQAGSQAPMLYAISILIVFLCLA---ALYESWSVPFAVMLVVPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I  ++    LF +  ++    A LT +G +  + +++ +  ++    Y   I     + 
Sbjct: 903  GILGSVTAAFLFNLPNDVYLQVAFLTTVGLAAKNAILIVEFAKE---QYEEGIDLMTAVS 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             + ++     + TSMA  + V P+A+    G +   +  I +  G+  A   +IF     
Sbjct: 960  NAASQRFRPILMTSMAFILGVTPLAMASGAGSASQNAIGIAVMGGMFAATFLAIFFVPMF 1019

Query: 820  LLFIYDWRAKNAR 832
             + +     K  +
Sbjct: 1020 YVMVEKLFHKQDK 1032


>gi|225873735|ref|YP_002755194.1| protein-export membrane protein SecD [Acidobacterium capsulatum
           ATCC 51196]
 gi|225793017|gb|ACO33107.1| protein-export membrane protein SecD [Acidobacterium capsulatum
           ATCC 51196]
          Length = 540

 Score =  177 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 155/540 (28%), Positives = 266/540 (49%), Gaps = 42/540 (7%)

Query: 1   MRNN-PWLVILYSMICCIGL--LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           MR N     IL  +I    +  +  +P     + L         NRI LGLDL+GG+HL+
Sbjct: 1   MRTNLRAKTILIVVILIAFVYGIFGIPKGFSGAALQT----AILNRIQLGLDLKGGTHLI 56

Query: 58  LEVDEDDFVNGFLQMYSDELR-----SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA 112
           L+V  D+ V       ++ ++     + +  E +     +Q    +T+  A +   ++I 
Sbjct: 57  LQVMTDEAVAAQAAQDAETIQGDLQQNGITGEQVTNPEPKQNPGLVTIQGAPAAHVQDIN 116

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
             +                +  +        ++ +      Q+   A+ QS+E+IRQR+D
Sbjct: 117 SVLQQQFSQ----------EYTISQNGNTSWTLQMKPTVETQMKQKAVTQSIEVIRQRVD 166

Query: 173 QIGISESTIQRLG--SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL------------ 218
            +G++   +      S +IL++LPG  DP+R+R ++ +TAK+ FH V             
Sbjct: 167 ALGVTSPVVAPYNLGSDQILVELPGVDDPARVRNVIQSTAKLEFHLVEGGPWPDQQSALQ 226

Query: 219 ------PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
                 P +S+            S    Y V     + G  +  A    +P T++P V+ 
Sbjct: 227 AIGGSVPYDSELVQSVIGASGPGSPAAWYEVTKVPVVGGTDIRDAQPGTNPNTNEPQVNF 286

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                   +F   T  N GKPL +VLD R+     IN  I        G  +++ A  L+
Sbjct: 287 YLTTSAGDKFGRFTTANKGKPLGIVLDNRLQEVATINDTIRDQGTISGGGISMQEAKDLS 346

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
            MLR G+LP  +  ++E  +G  LG DSI+ G  A + G+  +++FM++ Y   G+ AD 
Sbjct: 347 LMLRTGALPASIKYLQESTIGPSLGMDSIHAGVMASIFGMSAVLIFMLIYYKGAGINADL 406

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++ LN+++ L  +    + LTLP IAG++L +G+ VDSN+L+ ERIREE R  ++   ++
Sbjct: 407 ALILNLVILLGFMGYTHSVLTLPGIAGVILTVGMGVDSNVLIFERIREELRAGKAPSAAV 466

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           D GF+ A++TI D+++T +++  +LF FG GAVRGFA+T+   +L ++FTA+ + R +  
Sbjct: 467 DQGFAHAWTTILDTHVTTVVSAAILFIFGTGAVRGFAVTLTFGLLANLFTAVFVSRVIFE 526



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 87/216 (40%), Gaps = 4/216 (1%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 +     G    Q      +  +   +           +GP +  + I  G++  
Sbjct: 323 NDTIRDQGTISGGGISMQEAKDLSLMLRTGALPASIKYLQESTIGPSLGMDSIHAGVMAS 382

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I    A+LI++ I +K    + A   LIL++   LGF         L  +A V+  +G  
Sbjct: 383 IFGMSAVLIFMLIYYK-GAGINADLALILNLVILLGFMGYTHSVLTLPGIAGVILTVGMG 441

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  V++++R+R+ ++      +    +D+         + T +   +S   + ++G   
Sbjct: 442 VDSNVLIFERIREELRA---GKAPSAAVDQGFAHAWTTILDTHVTTVVSAAILFIFGTGA 498

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +  FA+ + FG++    +++F++  I     + + +
Sbjct: 499 VRGFAVTLTFGLLANLFTAVFVSRVIFEANLNRKQR 534


>gi|254884718|ref|ZP_05257428.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642388|ref|ZP_07997042.1| cation efflux pump [Bacteroides sp. 3_1_40A]
 gi|254837511|gb|EET17820.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317386003|gb|EFV66928.1| cation efflux pump [Bacteroides sp. 3_1_40A]
          Length = 1038

 Score =  177 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 76/610 (12%), Positives = 175/610 (28%), Gaps = 46/610 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLFVVAGLVT-----LNILPVAQYPDITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++F      +     V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSASGAYSLTVTFEVGTDIDMATVMVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L    K   +    +    +++   + D +    +  +       +DQ+   
Sbjct: 111 RVSVALNSLPEAVKVQGVTVQKQSSNIVMMLTLSGDSI-YDGLYLTNYANLNLVDQLTRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR-DS 236
                          +    +P  +R    T  ++       N        G        
Sbjct: 170 PGVGAVDVMGAGDYSMRVWLNPETMRIRNITPQQVYAAIQSQNMEVSAGYVGQPIGSLAD 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  K  +S                +    I   E   +         I    A 
Sbjct: 230 NDFQYTLNVKGRLS-------------TPEEFGDIILRVEDQGKVLRLKDVAKIELGSAG 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +     +      A L           V         
Sbjct: 277 YGVVSRLKGQPTAAIAVYQLPGSNSLDVSKHVRARMAELAETFPAGVKYNVTLDTTDVVH 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F  +   +  L+   +I +++I TLA+++ LG ++   +
Sbjct: 337 DSIDEVMKTFVEAIILVVLVIFFFLQSWRAVLIPCLTIPVSLIGTLAVMAALGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L I + VD  I+V E       + +     + +         I       +   I
Sbjct: 397 LFGLILAIAIVVDDAIVVTENATRILDEGKLDARAATEQAMGEITGPIVGVVLVLLAVFI 456

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPL 528
            T ++    G   + FA+T+  S +IS F ++++  A+   +      +K    +  + +
Sbjct: 457 PTTLISGISGQLYKQFALTIAASTVISGFNSLTLTPAVCALLLRPTPTHKARLFLWFDKM 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           + +       +++++ AR      S +       L+F    +  I  +      +    P
Sbjct: 517 NDWMQRVYDASVKWLLARPVIAIGSYIVISVIAILMFVKWPSTFIPEEDDGYFMIAIQLP 576

Query: 589 VDLSVVRSNL 598
              S+ R+ +
Sbjct: 577 AASSLERTQM 586



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 74/238 (31%), Gaps = 10/238 (4%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V +   +      + +E     D   +        +         S      +  + K 
Sbjct: 788  VVNSKGEMVPFSSFTQIEQKLGMDQINRYNMYSAASITCTPAAGSSSGQAIEAMGSLIKN 847

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                       +      +         I+ ++++    L+       W   + A+  L 
Sbjct: 848  QLGGEFGYEWTSVAYQETQAGNTTTIILIMALLVAY---LVLAAQYESWTSPVAAVMGLP 904

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I   +    + G+  ++     ++ LI  S  + +++ +  R   K        R+  
Sbjct: 905  VAILGAMLGCWVMGVPVSIYTQIGIILLIALSAKNGILIVEFARDYRKA---GNPIREAA 961

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA-SSSIFI 815
             ++ +  L   + TS    + V+P+      G     +    + FG+ V    ++I+I
Sbjct: 962  YEAGHVRLRPILMTSFTFVLGVMPLLFATGAGAGSRVALGAAVVFGMAVNTIFATIYI 1019



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/430 (10%), Positives = 133/430 (30%), Gaps = 14/430 (3%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           +  + +  +      + +   +  D ++         +    S+  ++ +          
Sbjct: 76  MLYMSSNSSASGAYSLTVTFEVGTDIDMATVMVQNRVSVALNSLPEAVKVQGVTVQKQSS 135

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +  +   ++   ++             +     +    A+ ++ A    +  +   +++ 
Sbjct: 136 NIVMMLTLSGDSIYDGLYLTNYANLNLVDQLTRVPGVGAVDVMGAGDYSMRVWLNPETMR 195

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL--G 582
           I  ++   +     +     +  +        +                  + G  +   
Sbjct: 196 IRNITPQQVYAAIQSQNMEVSAGYVGQPIGSLADNDFQYTLNVKGRLSTPEEFGDIILRV 255

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
               + + L  V           +  +        +   Q    +S+  ++ +     ++
Sbjct: 256 EDQGKVLRLKDVAKIELGSAGYGVVSRLKGQPTAAIAVYQLPGSNSLDVSKHVRARMAEL 315

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
            E  P     N  +    +  + I + +   + + I +++ I+     W   L    T+ 
Sbjct: 316 AETFPAGVKYNVTLDTTDVVHDSIDEVMKTFVEAIILVVLVIFFFLQSWRAVLIPCLTIP 375

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFR 758
           + +  TL   A  G   N   +  ++  I   V+D +VV +   R+    KL       R
Sbjct: 376 VSLIGTLAVMAALGFSINTLTLFGLILAIAIVVDDAIVVTENATRILDEGKL-----DAR 430

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFI 815
              ++++ E  G  V   +      +P   + G  G +   FA+ +A   V++  +S+ +
Sbjct: 431 AATEQAMGEITGPIVGVVLVLLAVFIPTTLISGISGQLYKQFALTIAASTVISGFNSLTL 490

Query: 816 AAPILLFIYD 825
              +   +  
Sbjct: 491 TPAVCALLLR 500


>gi|328470963|gb|EGF41874.1| preprotein translocase subunit SecF [Vibrio parahaemolyticus 10329]
          Length = 297

 Score =  177 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              + R++   +SI+ ++ ++  L   GLN G+DF GG+   V  ++ +    +   L+ 
Sbjct: 5   NIRKIRYFTTLVSIILTVIALVALGFKGLNLGLDFTGGMVTEVKVDKQLTNHDLLDVLQP 64

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 S      +  +++R           +     V   +  I     + +  IVG +
Sbjct: 65  KLGESTSVTRSGEDGRWVIRYSAPEEGQTLPS-----VADVLKPISHQVDVVSNSIVGAQ 119

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           + ++L  +G + ++I  +++L Y+  RF+W  A G++  L  D+   LGFFA+  +EFNL
Sbjct: 120 VGQDLFEQGGLALLICVLSILGYLCFRFEWRLASGSLFALAHDVILVLGFFAITQMEFNL 179

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T  AAVL ++GYS+ND +++ DR+R+ + +   S    D+ D+++  T  R++ TS    
Sbjct: 180 TVFAAVLAILGYSLNDSIIIADRIRE-LLIAKQSWKTEDINDQAVIATFSRTMVTSGTTL 238

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           I+V  + + GG+ +  F+  M  G++    SSI I   +  ++ 
Sbjct: 239 ITVGALWIMGGAPLAGFSTAMFIGVLSGTWSSISIGTVLPEWLK 282


>gi|298290453|ref|YP_003692392.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Starkeya
           novella DSM 506]
 gi|296926964|gb|ADH87773.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Starkeya
           novella DSM 506]
          Length = 1059

 Score =  177 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 69/692 (9%), Positives = 177/692 (25%), Gaps = 47/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL      L    +  +P  +P   I                  
Sbjct: 10  RPIFAGVLSVVIFLAGLLA-----LRVMPISEYPEVVPPQVI---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAATVATPIEEQINGVEDMLYMSSQATTDGVMTLTVTFKLGTDPDKATQLVQNRVAQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T       I++                   +    D++       
Sbjct: 116 AEPRLPEEVRALGITTAKSSPNFIMVVHLLSPNDRYDITYLRNYAVLNVKDRLARISGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   +   ++      N      + G     +    Q 
Sbjct: 176 QIDIFGAGDYSMRVWLDPQKIAEHGLSAGDVANEIRAQNVQAAAGIVGASPAAEGVDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +       +         I    A      
Sbjct: 236 SVNAQGRLETEE-------------EFGDIVVKTGTDGQVVRLRDVARIELGAADYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     E        ++          +          S   
Sbjct: 283 LLDNKQAVGIGVFQAPGSNALEIAENVRKTMEEVKKTMPEGVDYAIVYDTTRFVDASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T A++ + G ++   S+ G+V
Sbjct: 343 VVHTLFEAVLLVVIVVVVFLQTWRASIIPLLAVPVSIVGTFAVMYIFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +     +     I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLTPRAAAYQAMTEVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIV--------------RAMMIFIIRYKKMKSID 524
              G   R FA+T+ +S +IS   ++++                 M+  +I         
Sbjct: 463 GLSGQFYRQFALTIAISTVISAINSLTLSPALAALLLRGHDAPPDMLQRVINALFGWFFR 522

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                         +      +   + +     +          +  G       Q  V 
Sbjct: 523 GFNFVFSRGSRGYGSGVRGTLKVKSLVMIFYALMLGATWWLFQAVPSGFVPAQDKQYLVG 582

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +  D + +    E ++          G  + +             +    +       
Sbjct: 583 FAQLPDGATLDRTEEVIRKMTEITLAEPGVASAVAFPGLSIAGFSNSSNAGIVFSVLKPF 642

Query: 645 IVPLSTIQNTEIVGPKISRE--LIRKGIVGVI 674
                   +   +   ++++  +I+   + + 
Sbjct: 643 EERTDPSLSAGAIAASLNQKYGVIKDAFIAMF 674



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/233 (10%), Positives = 75/233 (32%), Gaps = 11/233 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +E     + + +                  S       + + +++          +   
Sbjct: 813  KVEQTAGPERAQRYNGFLTADFNASPAPGFSSGQAQDAAKRIAEEVLPPGFDYEWTDLTY 872

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                          +   I+ + + + +  +++     +  I  + + +   L    L G
Sbjct: 873  QEILAGN----SATLVFPIAILLVFLVLAAQYESLTLPIAIILIVPMGLLAALFGVWLGG 928

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + N+     ++ L+G S  + +++ +  R+   L     +  D   ++    L   + T
Sbjct: 929  GDNNIFTQIGLVVLVGLSAKNAILIVEFARE---LEFVGRNPVDAAIEAARLRLRPILMT 985

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            S A  + VLP+ +    G  +  +  + +  G++      +F+     + +  
Sbjct: 986  SFAFIMGVLPLVLSTGAGAEMRHAMGVAVFAGMIGVTFFGLFLTPVFYVLLRR 1038



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 54/127 (42%), Gaps = 8/127 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFAVMYIFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI- 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
                ++ R    +++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 424 --ENGLTPRAAAYQAMTEVSGPII-AIALVLVAVFVPLAFISGLSGQFYRQFALTIAIST 480

Query: 806 VVAASSS 812
           V++A +S
Sbjct: 481 VISAINS 487


>gi|289668558|ref|ZP_06489633.1| acriflavin resistance protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1041

 Score =  177 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 75/678 (11%), Positives = 184/678 (27%), Gaps = 43/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P               +      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  SR  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDALAGIEGISTIEARSRNGSSDISIEFVQSRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARPPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARQLTVADVEAALQNENVELPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLNKGEGGYVVRLGDVARVELTSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +       A   A  ++          V          +    
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVAREARAQAEEVQKSLPQGTNIFVAFDTTTFIDAAVERV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LVL+V+++ +   +  L+   ++ + +I +   L     ++ L ++  +VL
Sbjct: 335 YHTLVEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIASFIALYAFDFSINLLTLLALVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E I+      +    +   G  +    +  +    +   + + F  G
Sbjct: 395 CIGLVVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP---- 535
                 R  A+ +  ++ IS F A+++   M   ++R  +    +         +     
Sbjct: 455 NTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRSHRQAKPNRFHQWFDGRMQAVSG 514

Query: 536 -DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +++    R W   + +L ++ +   L     +     +      ++ + P      
Sbjct: 515 AYGRSLERHVHRTWIFALLMLLALGASAWLMGRIPSELAPAEDRGNFQIMIDGPEGAGFD 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +  +  Q+  I       +K  +      PG   +   +         +         T
Sbjct: 575 YTVGQMHQVEAILRPYVGPDKPIVRANPRVPGGFGSSEEMHTGRVSVFLQDWQKRNRPTT 634

Query: 655 EIVGPKISRELIRKGIVG 672
           E+      +  +  G+  
Sbjct: 635 EVADEVQQKLNVLSGVRA 652



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 859  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     S    I +S +  L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDEGRSVHAAIVESASVRLRPILMTSIATVVGAIPLVV 975

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GG       +  + + FG+ ++   S+++       I  +      +
Sbjct: 976  AGGPGSASRATIGVVVIFGVSLSTLLSLYVVPAFYSLIAPYTKSPEAV 1023



 Score = 42.8 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL    T+ + +  +      F    NL  + A++  IG  V+D +VV + +    + 
Sbjct: 357 RAALIPAVTVPVCLIASFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENI---QRR 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                       +   +     + T+       LP+    G+    F
Sbjct: 414 IDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEGNTGRLF 460


>gi|254412058|ref|ZP_05025833.1| RND transporter, HAE1/HME family, permease protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196181024|gb|EDX76013.1| RND transporter, HAE1/HME family, permease protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 1016

 Score =  177 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 70/604 (11%), Positives = 168/604 (27%), Gaps = 40/604 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L+ ++   GL+        +  +D  P+      +           +     
Sbjct: 11  KKPVPTIVLFLILGIFGLVS-----FFRLGIDSNPNIDIPAVM---------VTVTQPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L        ++ +  +  T+SF      +   + V   +  
Sbjct: 57  GPTELETQVTKKIEDSVAGLGNIDELTSTVTEGSSTTTVSFVLGTDSDRATNDVRNAVAQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D  + ++        SI+      +       + S  + R     +       
Sbjct: 117 IRQDLPQDVNEPIVKRLEFAGGSIMTYAVASE--TRSVEQLSDLVDRTISRALLNVPGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++  + DPSRL+    T  +++      N    G    V     +     
Sbjct: 175 QIDRLGGVDREIRVDLDPSRLQAYGITATQVNDQIRNLNIDLPGGRGNVGGSEQNIRTLG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   E+    +                               +   +    A      
Sbjct: 235 SAETVAELRSYRIVLP--------------------NGATVPLSSLGEVEDSFAEQRQAA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           +     E        L           +      A   S   
Sbjct: 275 SLNGESVVAFSVRRSTGSTLVTVEEGVREAVTELEKTLPDDVTLALIFTRADAIRDSYQA 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   L +I + + +   +  L+   ++ L++I T  ++ LLG TL   ++  + 
Sbjct: 335 TIDALVLACILTVIAVGLFLRDWRVTLITATALPLSIIPTFGVMKLLGYTLNGMTLLALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I + E I +     +  F +           +  +  T +   + + F G
Sbjct: 395 LAVGNLVDDAICMIENIDQHLDMGKKPFNAALDASREIGLAVVATTATIVAVFIPVAFMG 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +S + S   A ++   +  + ++ K+ +  + +            
Sbjct: 455 GVPGQFFQPFGVTVAVSTMFSTLVACTMTPMLSAYWLKSKRNREQETSKKRIHPYRNLLT 514

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                R     + +   F      +       +     G   + V       LS     +
Sbjct: 515 WALRHRITTLLIAL-AFFIGSLQLVPLIPKGLFDSGDTGLSTVMVELPPGSTLSETEEIM 573

Query: 599 ESLQ 602
           + L 
Sbjct: 574 QQLN 577



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 84/257 (32%), Gaps = 8/257 (3%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
            ++ +     V LS +    +S      +              +      V     +   
Sbjct: 245 YRIVLPNGATVPLSSLGEVEDSFAEQRQAASLNGESVVAFSVRRSTGSTLVTVEEGVREA 304

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAI 697
             ++ + +P               R+  +  I  ++++ I  +I +      W   L   
Sbjct: 305 VTELEKTLPDDVTLALIFTRADAIRDSYQATIDALVLACILTVIAVGLFLRDWRVTLITA 364

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
           T L L I  T G   L G   N   + A+   +G  V+D + + + + +++ +      F
Sbjct: 365 TALPLSIIPTFGVMKLLGYTLNGMTLLALALAVGNLVDDAICMIENIDQHLDMGKK--PF 422

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIF 814
              +D S  E     V T+       +P+A  GG        F + +A   + +   +  
Sbjct: 423 NAALDAS-REIGLAVVATTATIVAVFIPVAFMGGVPGQFFQPFGVTVAVSTMFSTLVA-C 480

Query: 815 IAAPILLFIYDWRAKNA 831
              P+L   +    +N 
Sbjct: 481 TMTPMLSAYWLKSKRNR 497



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 59/151 (39%), Gaps = 7/151 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
             KI +++  +    +  + +++  I + +   + +  G +  L L I   L    +   
Sbjct: 830 DAKIMQDIFTRFATALGAAILSIYAILVLLYSNFLYPFGILVALPLSIGGALLGLLVTQK 889

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           E  L A+  ++ L+G    + +++ D     +            + ++    L   + TS
Sbjct: 890 ELGLFALIGIVLLMGLVTKNAILLVDFA---LAGIKEGKPQFKAVVEAGVSRLRPILMTS 946

Query: 777 MAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           ++    ++P+A+     G V    AI +  G
Sbjct: 947 VSTIAGMMPIALELGADGEVRSPMAIAVIGG 977


>gi|124266235|ref|YP_001020239.1| nodulation protein [Methylibium petroleiphilum PM1]
 gi|124259010|gb|ABM94004.1| nodulation protein precursor [Methylibium petroleiphilum PM1]
          Length = 1069

 Score =  177 bits (447), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 57/546 (10%), Positives = 153/546 (28%), Gaps = 29/546 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N     ++      +GL         +  +D+FP+      +                  
Sbjct: 10  NPVMATMVMLAFVVLGLFS-----YQRLSVDQFPNIDFPTVV---------VQFEYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +E  + +           +  + + + F         A+ V   +  V
Sbjct: 56  PEIVESEVTKKVEEAVNTVAGINSLYSRSYEGSSIVIIEFNLDVDGRKAAEDVREKVALV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  + ++  +         +       +       E +    +    ++        
Sbjct: 116 RPLLREEVEEPRVSRFDPASQPVFNVAVLSEDGRRSTQELTTWATQVLQKRLENVRGVGA 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  ++     P+ +  L  +  ++       N          R           
Sbjct: 176 VSLIGGLEREINIYLRPAAMEALGVSVEQVLAAVKSENQELPMGAIRSREQERVVQINAR 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +   I +    A  +                          ++      +    +
Sbjct: 236 MKTPEDFRDIVVARKGAAGNNL------------SAGAPIRLRQLADVVDGPQELETLAL 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    ++         R  + P     +   N  +   S +  
Sbjct: 284 YNGQRTVLLSVQKSQGENTIAVVDGLQRALENARDVTPPGIRTEINRDNSRSIRVSVANV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T    A L ++++F+ +   +  ++   ++ + +I T   +   G T+   ++  + L
Sbjct: 344 KRTLIEGAALTILIVFLFLNSWRSTVITGLTLPIALIGTFLFMYAFGFTINTITMMALSL 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +GL +D  I+V E I    +  +S   +   G       +  + ++ +   + + F G 
Sbjct: 404 CVGLLIDDAIVVRENIVRHVQMGKSPHQAALDGTQEIGLAVLATTLSIVAVFLPIGFMGG 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     F +T+  ++LISMF + ++   +       +        PL+ +      + 
Sbjct: 464 IVGKFFHEFGLTIVAAVLISMFVSFTLDPMLSSVWNDPQAHGIHRGPPLTLYDRTIGRVT 523

Query: 540 IQFMRA 545
             F R 
Sbjct: 524 GAFDRF 529



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 78/240 (32%), Gaps = 12/240 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R   + +                 V L  Q         V++ +++ +     ++    
Sbjct: 265 LRQLADVVDGPQELETLALYNGQRTVLLSVQKSQGENTIAVVDGLQRALENARDVTPPGI 324

Query: 654 TEIVGPKISRELIRKGIVG----VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              +    SR +           +  +A+ +LI       W   +    TL + +  T  
Sbjct: 325 RTEINRDNSRSIRVSVANVKRTLIEGAALTILIVFLFLNSWRSTVITGLTLPIALIGTFL 384

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINET 768
           F   FG   N   + A+   +G  ++D +VV    R+N+  +     S          E 
Sbjct: 385 FMYAFGFTINTITMMALSLCVGLLIDDAIVV----RENIVRHVQMGKSPHQAALDGTQEI 440

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               + T+++     LP+   GG V      F + +   ++++   S  +   +     D
Sbjct: 441 GLAVLATTLSIVAVFLPIGFMGGIVGKFFHEFGLTIVAAVLISMFVSFTLDPMLSSVWND 500



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 91/266 (34%), Gaps = 10/266 (3%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
             + +     + L V A       +VR +  +           +                 
Sbjct: 778  RHSLADLARLPLNVTAAADGTPRIVRLSQVAEVSPSTGPNQINRRDLNREINIDANAFGR 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +   V   ++K +  +      + +     K  +E     I  + ++ + + + +  +F+
Sbjct: 838  SSGDVSADIRKLLDSVAWPPGYRYSFGGSTKNMQESFSYAIGALALAVVFIYMILASQFR 897

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMR 745
             +   L  +++L L +   +     F    N+ ++  ++ L+G    + +++ D   R R
Sbjct: 898  SFLQPLALMSSLPLTLIGVVLALLAFRSTLNMFSIIGIVMLMGLVTKNAILLVDFAIRSR 957

Query: 746  KNMKLYTTSISF---RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
            +         +     D +  +    L   + T++A    ++P+A     G         
Sbjct: 958  EGTHGAAGEHAPMGREDALLHAAQVRLRPILMTTLAMIFGMVPLAFALSEGSEQRAPMGQ 1017

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYD 825
             +  G++ ++  ++ +   I  ++ D
Sbjct: 1018 AVIGGVITSSLLTLVVVPVIYCYLDD 1043


>gi|330825153|ref|YP_004388456.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Alicycliphilus denitrificans K601]
 gi|329310525|gb|AEB84940.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Alicycliphilus denitrificans K601]
          Length = 1047

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 155/548 (28%), Gaps = 34/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L           L+ +P   P              +       
Sbjct: 8   RPVFAWVLSIVIMLAGGLSIF-----TLPLEMYPEIAPPRVT---------LNTTYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++    L +      +     +++ TL+FA     +    +    LQG
Sbjct: 54  AETVENSVTQVIEQQLKGLDRLLYMSSTSDSAGRSRTTLTFAPGANIDVAQVQAQNKLQG 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L    K   +      +  +V             +     +    +D I   +   
Sbjct: 114 AMNRLPDAVKSRGVFVNKGGQDYLVTYVFTSPDPNVSQVTIGDYLTSNVVDVIARVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ + +     + +       N        G            
Sbjct: 174 DVTVFGT-NYAMRIWMNPALMEKYALMPSDLVNALNAQNAQVSAGQLGTLPAVPGQMLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + +++ +              +    +                 +      +    
Sbjct: 233 TVTARSKLTSVQ-------------EFKDIVLKSAPDGSVVTMADVARVELAADSLTVRS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L           V          S   
Sbjct: 280 ILNGQPGAGLGIVLADGANAMQVADAVARKIAELAPYFPDGITGFVSSDTTPFVRASIKE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  L+   ++ + ++ TL +LS +G ++ + ++  +V
Sbjct: 340 VIKTLGEAMVLVTLVMFLFLQNFRATLIPAIAVPVVLLGTLGVLSAMGYSINMLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +      +           +    +T     V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMSEQGLPPKEATRKSMKEITPALVGIGLTLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
            G      R F+IT+  ++ +S+F A+++  A+    +      +++   PL        
Sbjct: 460 AGSVGVIYRQFSITIVAAMGLSVFVALTLTPALCASLLKPMAHERTVRRGPLGWVDRFFI 519

Query: 537 CIAIQFMR 544
                F R
Sbjct: 520 WFNHHFDR 527



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 84/235 (35%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V ++ V     +     +           L  +     +++     +     ++    P 
Sbjct: 260 VTMADVARVELAADSLTVRSILNGQPGAGLGIVLADGANAMQVADAVARKIAELAPYFPD 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         R  I++ I  +  + + + + +++  + +   L     + + +  T
Sbjct: 320 GITGFVSSDTTPFVRASIKEVIKTLGEAMVLVTLVMFLFLQNFRATLIPAIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG  +  G   N+  + A++  IG  V+D +VV + +     +    +  ++   KS+ E
Sbjct: 380 LGVLSAMGYSINMLTMFALVLAIGLLVDDAIVVVENV--ERVMSEQGLPPKEATRKSMKE 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
                V   +      +PMA + GSV      F+I +   + ++   ++ +   +
Sbjct: 438 ITPALVGIGLTLSAVFVPMAFFAGSVGVIYRQFSITIVAAMGLSVFVALTLTPAL 492



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 74/256 (28%), Gaps = 9/256 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +   Q  V       +        S   G      ++G     ++    PG S    
Sbjct: 780  MLPQDIAQWSVRNRDGQMVRFSAFATTSWGNGSPQLMRYNGSPALEMQANTPPGASSGDA 839

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                                   +   +   +      V ++   + +     +   W  
Sbjct: 840  MAAVERIMATMPPGIGFEWTGASLQERQSGSQAPMLYAVSILFVFLCLA---ALYESWSV 896

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                +  + L +   L      G+  ++     +LT +G +  + +++ +     ++L  
Sbjct: 897  PFSVMLAVPLGVIGALAATYGRGLANDVYFQVGLLTTVGLASKNAILIVEFA---VQLQE 953

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAA 809
               S  D   +++   L   + TS+A    VLP+      G     +    +  G+V + 
Sbjct: 954  RGRSLIDATVEAVRLRLRPILMTSLAFGFGVLPLAIGTGAGAGGRRAIGTAVLGGMVFST 1013

Query: 810  SSSIFIAAPILLFIYD 825
               IF      L +  
Sbjct: 1014 LLGIFFVPVFFLIVRR 1029


>gi|88705197|ref|ZP_01102908.1| AcrB/AcrD/AcrF family protein [Congregibacter litoralis KT71]
 gi|88700287|gb|EAQ97395.1| AcrB/AcrD/AcrF family protein [Congregibacter litoralis KT71]
          Length = 1042

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 68/685 (9%), Positives = 189/685 (27%), Gaps = 47/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +   +  ++  ++   G++  L     Q     +P   P               +V   E
Sbjct: 9   QRPVFATVIALLLVSFGVMAFL-----QLSTREYPDMSPAQ-----------VSIVTNYE 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D V   +    ++    ++       S    ++ IT+ F   R  ++ A+ V   +
Sbjct: 53  GAASDVVETRITQPIEDEIGGIEGIRTIRSSSSDGRSTITVEFELGRDIDSAANDVRDRV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
              + +L  + ++  +     +   +V      +      ++ +    R  +D+  +   
Sbjct: 113 SRASRRLPEEAERPQVTKADSETTPLVYMSVGGEG--MSPMDITDYAERYIVDRFAVLPG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    D  +L       + +       N          +++      
Sbjct: 171 VASVRVFGGAPRSMRVWLDRQKLSARELAVSDVLAALRQENVELPAGRLDSQYM------ 224

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                         L                 +                 + +  +    
Sbjct: 225 -------------ELPVRVERSYRSATDFRRLVVRRGDDGHLVRLAEVARVEEGPSTRRR 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                           ++  +    ++        +                      + 
Sbjct: 272 LFFSNGENSVSVGVVKQSDANTVEVLDAVHKEMLAVERDLPDGMGIASSGDASAFIRAAI 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +    T A+   LV IV+ + +   +  L+    I ++++  +  L  +  +L L ++  
Sbjct: 332 NGVYTTIALTIVLVSIVILLFLGTIRATLIPVVCIPVSLLGAVIALQAMDYSLNLITLLA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I+V E I       +    +   G  +    +  +    L     + F
Sbjct: 392 MVLAVGLVVDDAIVVLENIYRRVEDGEPPLLAAAGGAQQVGFAVIATTAVLLAVFSPVIF 451

Query: 480 FGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
               + R     A+T+ +++ IS   A+S+V  +   ++R K+  S+    +        
Sbjct: 452 LQDASSRLFVELAVTISVAVCISSVLALSLVPMLCSQVLRRKESHSVLDRAVETVMTRLR 511

Query: 537 CIAIQFMRA-----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +R          V  ++   +  +           ++ +  +   +      ++
Sbjct: 512 SAYEASLRYLLSHAWMSLVIAALALVMLPLLFQQLKQEYVPVEDQDSVMAIINTQEGTNI 571

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R+ +E LQ   +  +        L    ++   S +       +            +
Sbjct: 572 DSMRAVIEQLQPPLLELEKAGSLTRVLFVAPFRNSTSTSTAFSRISMVPWDERDYSAFEL 631

Query: 652 QNTEIVGPKISRELIRKGIVGVIIS 676
           ++      +    +     V   + 
Sbjct: 632 RDQMAATWRDVPGIRVMTFVPAGLG 656



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 73/261 (27%), Gaps = 10/261 (3%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               +L V       L  +       +      + F       V +            VL
Sbjct: 238 TDFRRLVVRRGDDGHLVRLAEVARVEEGPSTRRRLFFSNGENSVSVGVVKQSDANTVEVL 297

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKW 690
           + V K++  +                S  +          + + I  ++++I +      
Sbjct: 298 DAVHKEMLAVERDLPDGMGIASSGDASAFIRAAINGVYTTIALTIVLVSIVI-LLFLGTI 356

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L  +  + + +   +          NL  + A++  +G  V+D +VV + +    + 
Sbjct: 357 RATLIPVVCIPVSLLGAVIALQAMDYSLNLITLLAMVLAVGLVVDDAIVVLENI---YRR 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                           +     + T+        P+     +    F + +A  I VA  
Sbjct: 414 VEDGEPPLLAAAGGAQQVGFAVIATTAVLLAVFSPVIFLQDASSRLF-VELAVTISVAVC 472

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            S  +A  ++  +     +  
Sbjct: 473 ISSVLALSLVPMLCSQVLRRK 493



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 68/158 (43%), Gaps = 7/158 (4%)

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
               ++ + + + +  +F+ +      + T+ L +   L    + G  FNL +   +L LI
Sbjct: 857  AFGLALLVLFLVMAAQFESFIHPAVIMVTVPLALGGGLLGLFVTGQSFNLFSQIGLLMLI 916

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G +  + +++ + +    ++     +F + I K+    L   + T+++  +  LP+ +  
Sbjct: 917  GIATKNGILLVEFIN---QVRDEGWAFGEAIVKASVLRLRPVLMTAVSTIVGTLPLVLME 973

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G +      I + FG+ VA   ++++   I   +  
Sbjct: 974  GPGSTSRNVLGIVVLFGVSVATLFTLYLVPAIYSIVAR 1011


>gi|261378922|ref|ZP_05983495.1| multiple transferable resistance system protein MtrD [Neisseria
           cinerea ATCC 14685]
 gi|269144620|gb|EEZ71038.1| multiple transferable resistance system protein MtrD [Neisseria
           cinerea ATCC 14685]
          Length = 1067

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 67/574 (11%), Positives = 160/574 (27%), Gaps = 48/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS                 ++ L    
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAP-------------NITLRATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   +       ++L+F     ++    +V  
Sbjct: 50  PGASAQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPETDEDLAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   
Sbjct: 110 KLSEVLSMLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q          +    DP +L+    + A +       N        G        
Sbjct: 168 EGVGQVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVQGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  + ++S                +    I          +      +G  +   
Sbjct: 227 TVTATVTAQGQLS-------------TAEEFGNVILRANTDGSNVYLKDVAKVGLGMEDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +      A L                      
Sbjct: 274 SSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEI 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++
Sbjct: 334 SIEKVIHTLLEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM----GFSRAYSTIFDSNITALIA 473
             +VL IG+ VD  I+V E +            +         S A   I    ++  + 
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMAGEGLPPKAATKKAMGQISGAVIGITAVLMSVFVP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             +     G   + FA+TM  SI  S F A+++  A+         +K+I          
Sbjct: 454 LAMFSGATGNIYKQFALTMSASIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKG 508

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                  +F        G        ++ ++  +
Sbjct: 509 FFGWFNKKFDNWTHGYEGWVAKVLRKTLRMMVVY 542



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV-------------AAVL 727
            L+   +   W   L     L++ +        + G       +                +
Sbjct: 883  LVLAALYESWSIPLA--VLLVMPLGLAGAAAGVTGRNLTELMLGGIPAFANDIYFQVGFV 940

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            T++G S  + +++ +  +    L     S  +   ++        + TS A  + V+P+ 
Sbjct: 941  TVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGVVPLY 997

Query: 788  VWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + GG+      +    + +G++V    S+F+     + +  +  + A
Sbjct: 998  IAGGASSASQRAIGTTVFWGMLVGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 93/247 (37%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVAKVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  ++ + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLLEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  +    K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKAATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ M+  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMSASIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|226945439|ref|YP_002800512.1| multidrug efflux RND transporter MexF [Azotobacter vinelandii DJ]
 gi|226720366|gb|ACO79537.1| Multidrug efflux RND transporter MexF [Azotobacter vinelandii DJ]
          Length = 1057

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 74/595 (12%), Positives = 159/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLTLIGGAIALF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAIVGVEGMLYMSSQATSDGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +          ++            +  S        D++   +   
Sbjct: 116 TMPTLPTEVQRLGVTVDKASPDLTMVVHLTSPDERYDMLYLSNYATLNVKDELARLDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP R+     T   +       N        G        G Q 
Sbjct: 176 DVQLFGLGNYSLRVWLDPHRVASRGLTAMDVVDAIREQNRQVAAGSLGAPPAPGDTGFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENIIVRAGEDGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +     +      A L+          +         GS   
Sbjct: 283 QLNNRPAVAMPVFQRPGSNAIDISDAVRARMAELKQSFPQGVDYSIVYDPTVFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+V
Sbjct: 343 VVHTLFEAIVLVVLVVILFLQTWRASIIPLAAVPVSLIGTFAVMHLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +       +    +           I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIALGKPPLEATRQAMQEVTGPIVATALVLCAVFVPTAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         + +    L     
Sbjct: 463 GLTGQFYQQFALTIAISTVISAFNSLTLSPALAAVLLKDHHAPKDRFSRVLDRLLGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F RA    V         S   L  +G   G+ + G          P D
Sbjct: 523 GPFNRLFERASHGYVATVRHVLRGSAIALLVYGGLMGLTWLGFSSTPTGFVPPQD 577



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLAAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP--MAVWG--GSVIGSFAIPMAFGI 805
           L        +   +++ E  G  V T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GKPPLEATRQAMQEVTGPIVATAL-VLCAVFVPTAFISGLTGQFYQQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 64/184 (34%), Gaps = 8/184 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGV--IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
               E       + L     + V  +   +A L+       W   L  I  + + +   + 
Sbjct: 864  MTFEWTELTYQQILAGNTAIFVFPLCVLLAFLVLAAQYESWGLPLAVILIVPMTLLSAIV 923

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               + G + N+     ++ L+G +  + +++ +  +         +     + ++    L
Sbjct: 924  GVRIAGGDNNVFTQIGLIVLVGLACKNAILIVEFAKD---RQAEGLDRIAAVLEACRLRL 980

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A  + V+P+ +    G  +  +  + +  G++      + +     + +  +
Sbjct: 981  RPILMTSIAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGMIGVTLFGLLLTPVFFVLVRAF 1040

Query: 827  RAKN 830
              + 
Sbjct: 1041 VERR 1044


>gi|328952941|ref|YP_004370275.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328453265|gb|AEB09094.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 1059

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 75/634 (11%), Positives = 181/634 (28%), Gaps = 44/634 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L           + ++P   P               + +E   
Sbjct: 9   RPVFAWVIAIIMMLAGGLAI-----YNLPISQYPPIAPP-------------SIAIEAFY 50

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S      KI L+FA     +    +V  
Sbjct: 51  PGASAETVENSVIQIIEQKMTGFDKLLYMSATSDASGAGKIELTFAPGTDPDLAWAQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L    ++  +  +      ++++    +       + +          +   
Sbjct: 111 KLQLALASLPDVVQRQGVRVSKSTINWLLVTGLISEDASMDEFDLADYAQANVEQVLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P RL     T   +       N       FG        
Sbjct: 171 PGVGEVEVFSSQ-YAMRLWINPDRLNDYRLTMEDVIQGLQAYNVEVSAGQFGGAPAVAGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +           +                  
Sbjct: 230 RLNASVIVQNLL-------------KTPEEFAAIPLRINPDSSIVRVRDVGRTELGTERY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
              ++                 +   T +        L     P    I          G
Sbjct: 277 GRHQLFDGKPAAVLAVRLAPGANALKTADLVKAKMQELARYFPPGIKVIYPLDTTPFVRG 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +    T      LV +V+++ +   +  L+   ++ + ++ T A+L L G ++ + ++
Sbjct: 337 AINEVVMTLLEAILLVFLVMYLFLGNIRATLIPTLAVPVVILGTFAVLGLFGFSINMLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +      +         S +    +        
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMREITSALIGIGLVLAAVFGP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI---NPLSR 530
           + FFGG      R F++T+  ++L+S+  A+ +   +   +++              L R
Sbjct: 457 MAFFGGSTGVIYRQFSVTIIAAMLLSVVVALILTPVLCASLLQPLTKGHEAAETGFFLFR 516

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            F      A  ++R R+  +   IL       +++   +         + +  L N    
Sbjct: 517 PFFRWFDQAFLWIRNRYQILVGRILAKKLRYLVIYLLIVAILGFLYQRMPIAYLPNEDQG 576

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +  V++ L +    + + Q  D  +N+L+  + +
Sbjct: 577 IMYVQAMLPAGSTLEQTKQVLDEVRNYLLVEEKK 610



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 86/239 (35%), Gaps = 7/239 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +  V +  V       +               L        +++    +++   +++   
Sbjct: 258 SSIVRVRDVGRTELGTERYGRHQLFDGKPAAVLAVRLAPGANALKTADLVKAKMQELARY 317

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
            P        +      R  I + ++ ++ + + + + +++        L     + + I
Sbjct: 318 FPPGIKVIYPLDTTPFVRGAINEVVMTLLEAILLVFLVMYLFLGNIRATLIPTLAVPVVI 377

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T     LFG   N+  + A++  IG  V+D +VV + +     +    +  ++   KS
Sbjct: 378 LGTFAVLGLFGFSINMLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKS 435

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
           + E     +   +       PMA +GGS       F++ +   ++++   ++ I  P+L
Sbjct: 436 MREITSALIGIGLVLAAVFGPMAFFGGSTGVIYRQFSVTIIAAMLLSVVVAL-ILTPVL 493



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 58/160 (36%), Gaps = 9/160 (5%)

Query: 668  KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            K    ++ +   ++I++    +   W   +  +  L L +   +   +L G+  ++    
Sbjct: 875  KSQAPLLYAFSIIVIFLCLAAMYESWTIPITILLALPLGVVGGVVASSLRGLPNDVYFQI 934

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LT++G +  + +++   ++  M      +             L   V TS+A    VL
Sbjct: 935  GLLTVLGLTSKNAILI---VQFAMAKSKEGMELIQATLTGSKLRLRPIVMTSLAFGFGVL 991

Query: 785  P---MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            P       G     +    +  G+V A   +IF      +
Sbjct: 992  PLALATGAGAGAQIAIGTGVLGGMVTATFLAIFFIPLFFV 1031


>gi|154508890|ref|ZP_02044532.1| hypothetical protein ACTODO_01401 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798524|gb|EDN80944.1| hypothetical protein ACTODO_01401 [Actinomyces odontolyticus ATCC
           17982]
          Length = 362

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 12/293 (4%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R   VG++    +    L+   GLN  I+F GG Q  V        S     + S  + 
Sbjct: 23  KRKVFVGLAAAVLVLGFALVAILGLNRSIEFTGGSQFDVAHVSDQSESFASRAVTSTGLV 82

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           + + +      +  VR+Q    DS    ++ + +          +T   +  +GP     
Sbjct: 83  EGTPKVTRVGAD-SVRIQTSSLDSAQTAQMRDALASAY---GVDATEVQSSSIGPSWGSS 138

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           +  K    ++I    + + + + F+ W  A  A+  L+ DI  T+G FA+  +E +   V
Sbjct: 139 VTTKAAQSLVIFMALIALLMTVYFRSWRMAASALLALVHDIAVTIGVFAILQVEVSPATV 198

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
              LT++GYS+ D VVV+D++R+           +F + ++ ++N+T+ RS+ TS+ A +
Sbjct: 199 IGFLTILGYSLYDTVVVFDKVRELTSDVYEQKHYTFAEYVNLAVNQTMVRSINTSVVALL 258

Query: 782 SVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            V  + +      G   +   ++ +  G++    SSIFIA+P+L+   +  AK
Sbjct: 259 PVGAILIIGSVALGPGTLVDISLALFVGMIAGTYSSIFIASPLLVTFQELSAK 311


>gi|54295349|ref|YP_127764.1| hypothetical protein lpl2434 [Legionella pneumophila str. Lens]
 gi|53755181|emb|CAH16674.1| hypothetical protein lpl2434 [Legionella pneumophila str. Lens]
          Length = 1050

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 70/588 (11%), Positives = 150/588 (25%), Gaps = 28/588 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  IG++           + ++P+ +P               + +    
Sbjct: 9   RPVLANVIALFIVFIGIIAIAV-----LPVSQYPAIVPPT-------------IQVTTTY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L       +   +           +        + ++FA           V  
Sbjct: 51  PGADAKTLINTVALPIEQQVNGVEDMLYMQSTSTSGGTYTLIVTFAIGTDLNYAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   ++L    +K  +V   +    +              +           D++   
Sbjct: 111 RVQAAMAQLPESVQKQGVVVQQKSTAILQFITLTSKNNEYDGVFLDSYATINMQDELSRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP ++       + +       N        G        
Sbjct: 171 PGVGNVVVFGSGSYAMRVWLDPKKMLAFSLNPSDVLNAISYQNKEVSAGQLGAPPTVGKQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V    ++S              T       +      +         +       
Sbjct: 231 AYQFTVNVPGQLSDPKEFENIIIKTIDTPPDQNSSASSSA--QVVRIRDVGRVELGSESY 288

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A +     P     +          
Sbjct: 289 NQLANLNGKPTAAIGIFQLPGANALDVAQEVRKAVAKMAKQFPPGLEYSIPFDTTVFVKA 348

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+ + +   +  LV   ++ + +I T   + LLG ++ L ++
Sbjct: 349 SIEEVYKTLFEAGILVLIVIVVFLQNFRASLVPATTVPVTIIGTFFAMLLLGYSINLLTL 408

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IG+ VD  I++ E + +   K  S   S  +     +  I    +  +   V  
Sbjct: 409 FALVLAIGIVVDDAIVIVEGVTQHIEKGLSPKESAILAMKELFGPIIGITLVLMAVFVPA 468

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G     FA+ +  +  IS   A+++        ++              F  I
Sbjct: 469 GFMPGLTGSMYAQFALVIAATAFISAINAMTLKPTQCALWLKAPDTSKPKNIFFQAFDRI 528

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            + I   +++     V  S    +  I L+            G I L 
Sbjct: 529 YNPIESAYVKFIDRLVHRSGKVCLIGIILVACAIYGLTRIPTGFIPLE 576



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 79/220 (35%), Gaps = 7/220 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V +  V       +  +            +   Q    +++   + +     K+ +  
Sbjct: 271 QVVRIRDVGRVELGSESYNQLANLNGKPTAAIGIFQLPGANALDVAQEVRKAVAKMAKQF 330

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I +    +  + I +LI I +  + +  +L   TT+ + I 
Sbjct: 331 PPGLEYSIPFDTTVFVKASIEEVYKTLFEAGILVLIVIVVFLQNFRASLVPATTVPVTII 390

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   NL  + A++  IG  V+D +V+ + +    +     +S ++    ++
Sbjct: 391 GTFFAMLLLGYSINLLTLFALVLAIGIVVDDAIVIVEGV---TQHIEKGLSPKESAILAM 447

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
            E  G  +  ++      +P        GS+   FA+ +A
Sbjct: 448 KELFGPIIGITLVLMAVFVPAGFMPGLTGSMYAQFALVIA 487



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I +   +L+Y+ +      W      I ++ L +  T+      G++ N+     +L LI
Sbjct: 886  IFALSLVLVYLILSGQYENWLIPSAIILSVPLTLVGTVLALGSLGLDNNMYTQIGLLLLI 945

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
              +  + +++ +  R+  +++    S  +             + TS A  + V+P+    
Sbjct: 946  ALATKNAILIVEVAREQHEIHNK--SVLEAAVIGAKTRFRPILMTSFAFIMGVMPLVFAT 1003

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G +   S  I ++ G++ +   ++       + +  W+ K  
Sbjct: 1004 GAGANSRRSIGIAVSSGMLASTCLAVVFVPVFYVLLQTWQDKRK 1047


>gi|114320343|ref|YP_742026.1| acriflavin resistance protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226737|gb|ABI56536.1| acriflavin resistance protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1036

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 61/516 (11%), Positives = 149/516 (28%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G+       L Q  +  +P   P                     
Sbjct: 9   KRPVLATVISLVIVVLGVAS-----LSQLPIREYPDIDPPVV---------SVTTTYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  +    +   S +          R  + + T+ F  SR  +N A+ V   +  
Sbjct: 55  APQVIDTEITEVIESAVSGVDGIRTITSESRDGRGQTTIEFRTSRDVDNAANDVRDAINR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  + ++         ++    + ++      E S    R  +D++ + +   
Sbjct: 115 TLDDLPNEADQPVVAKADADARPMMWITLSSERWTPE--EVSDYAERFLVDRLSVLDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D   +     T A +       N          R    +   + 
Sbjct: 173 DIFIGGERRYAMRVWLDRRAMAARGITVADVESALRANNVELPAGRVESRMRDLTVRTET 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +  E + + +                                   + + +       
Sbjct: 233 RLAEPEEFANLVIRR--------------------TDDYLVRLGEVAQVERGVEDDDTTV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            ++Q +     +        +RA         V          S   
Sbjct: 273 RMNDQTAIGLGILRQSQANTIAVSDRVQEEMEAIRASLPEGMAMEVGYDESIFVRDSIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++ +F+ +   +   +   +I + VI    +++ LG ++ + ++  ++
Sbjct: 333 VVRTLLIAVGLVILTIFIFLRSLRATFIPSVTIPVAVIGAFTVMAPLGFSVNVLTLLALI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I+    + +    +   G  +    I  + +T +   V L F  
Sbjct: 393 LAIGLVVDDAIVMLENIQRRIDEGEPPLLAAYRGARQVAFAIIATTVTLIAVFVPLSFME 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G        F   +  ++  S   A+++   +    
Sbjct: 453 GNVGRLFTEFGFVLAAAVAFSSLVALTLAPMLCSKW 488



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 79/238 (33%), Gaps = 9/238 (3%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R   +      ++ Q   G              S      +E ++  + E + +  
Sbjct: 259 AQVERGVEDDDTTVRMNDQTAIGLGILRQSQANTIAVSDRVQEEMEAIRASLPEGMAMEV 318

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
             +  I      RE++R  ++ V +  + + I++              T+ + +      
Sbjct: 319 GYDESIFVRDSIREVVRTLLIAVGLVILTIFIFL---RSLRATFIPSVTIPVAVIGAFTV 375

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            A  G   N+  + A++  IG  V+D +V+ + +    +             +   +   
Sbjct: 376 MAPLGFSVNVLTLLALILAIGLVVDDAIVMLENI---QRRIDEGEPPLLAAYRGARQVAF 432

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + T++      +P++   G+V      F   +A  +  ++  ++ +A  +      
Sbjct: 433 AIIATTVTLIAVFVPLSFMEGNVGRLFTEFGFVLAAAVAFSSLVALTLAPMLCSKWLR 490



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 66/168 (39%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  +  + L +T  L    + G+  N+ +   ++ 
Sbjct: 856  VLTFALALLIVFLVLSAQFESFIHPLIILVAVPLAVTGALAALFVGGLTLNIYSQIGMIL 915

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-A 787
            LIG    + +++ +      ++    ++ R+ I +         + T+++     LP+  
Sbjct: 916  LIGLMAKNGILIVEFAN---QMRDRGMTVREAILEGATLRFRPVLMTAISTIFGALPLVL 972

Query: 788  VWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             +G       AI      G+  A+  ++ +   +   +  +      +
Sbjct: 973  AFGAGAESRMAIGTVIIGGMSFASLLTLVVIPVLYDLLARFTRPVNAV 1020


>gi|326387052|ref|ZP_08208662.1| hydrophobe/amphiphile efflux-1 HAE1 [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208233|gb|EGD59040.1| hydrophobe/amphiphile efflux-1 HAE1 [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 1041

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 187/687 (27%), Gaps = 37/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +           +++FP   P              +      +
Sbjct: 9   RPIFAWVLAILVMIGGAISVA-----TMGVEQFPDIAPPTI---------SVNATYPGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    +        +       I  +F      +    +V   L   
Sbjct: 55  AQTVENTVTQVLEQQLKGIDGLAYFTSASNNGSANIVGTFNKGVNPDIAQVQVQNVLTKA 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +   L     +   ++L+        S   + +  +    +D +        
Sbjct: 115 MSRLPTQVQTQGLQINKAQSDMLLLAGLYDTSSKSSVADLADYLAVHIVDPVSRINGVGS 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP+RL  +      +       N        G+     +      
Sbjct: 175 ADIYGTQ-YAMRIWLDPTRLAAVKLMPQDVISALTAQNAQISAGEVGMTPSPATQRLNAT 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  +  +               + +    +   ++   R        +            
Sbjct: 234 ITSRSRL-------------QTSEQFGNVVLKTQVDGSRVLLKDVARVELGQENYASISK 280

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L          +  +  +   T E      A L     P    +    +      S    
Sbjct: 281 LDGYPAVGLAITLASGANAMTTAEAVKTRIAELSRDMPPGYRIVYPRDSSVFVKISIMEV 340

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV++V+++ +   +  L+   ++ + ++ T  +L+ +G T+   ++ G+VL
Sbjct: 341 VKTLIEAIVLVVVVMYVFLQNWRATLIPAIAVPVVLLGTFGILAAVGYTVNTLTMFGLVL 400

Query: 423 GIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IGL VD  I+V E +     ++      +     +     +   ++      + + FFG
Sbjct: 401 AIGLLVDDAIVVVENVERVMSEDHLPPREATIRSMTEITPALIGISLVLAAVFIPMAFFG 460

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRA----MMIFIIRYKKMKSIDINPLSRFFLI 534
              G   R F+IT+  ++ +S+  A+ +  A    ++  +           N        
Sbjct: 461 GSTGTIYRQFSITIVSAMGLSVLVALILTPALAGTLLAHVDGPSGRLFTGFNRRYDALQN 520

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                ++    R        L    +   L        +  +    L V    P   ++ 
Sbjct: 521 RYQSRLEGFVRRPLPWFGVFLAICATAGWLDMRMQTSFLPEEDQANLFVSIIMPAGTTME 580

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +   S  +     +           +  +   +     V +               +  
Sbjct: 581 ETRKFSESVMAYVRKAEAANIEHAFMVVGRNQSAGTAQNVAQGFITLKNWDERPGADRTA 640

Query: 655 EIVGPKISRELIRKG-IVGVIISAIAM 680
             +  +++  L +      V ++  A+
Sbjct: 641 AAITQRLNAHLFQIYEGQAVALAPPAI 667



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T G  A  G   N   +  ++  IG  V+D +VV + +     
Sbjct: 362 WRATLIPAIAVPVVLLGTFGILAAVGYTVNTLTMFGLVLAIGLLVDDAIVVVENV--ERV 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  R+   +S+ E     +  S+      +PMA +GGS       F+I +   + 
Sbjct: 420 MSEDHLPPREATIRSMTEITPALIGISLVLAAVFIPMAFFGGSTGTIYRQFSITIVSAMG 479

Query: 807 VAASSSIFIAAPILLFI 823
           ++   ++ +   +   +
Sbjct: 480 LSVLVALILTPALAGTL 496



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/193 (12%), Positives = 65/193 (33%), Gaps = 7/193 (3%)

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
            +                  +    +       S + + + +   ++ W      +  + L
Sbjct: 843  QDDLGGGFTLAWSGLSYQQQVAANQAPALFAASILFIFLCLAALYESWSVPFSVMLVIPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   +    L G+  ++    A+LT IG S  + +++ +   +        +S      
Sbjct: 903  GIIGAVLAATLRGLSNDIFFQVALLTTIGLSAKNAILIIE-FAE--AALGRGLSPLAAAL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++        V TS+A    V+P+ +    G +   +    +  G++ A   ++F     
Sbjct: 960  EAARLRFRPIVMTSVAFIAGVVPLVLARGAGANGRQAIGTTVLGGMISATVLAVFFVPLF 1019

Query: 820  LLFIYDWRAKNAR 832
             + +  W A+  +
Sbjct: 1020 FIVVKGWFARTKK 1032


>gi|241668307|ref|ZP_04755885.1| preprotein translocase subunit SecD [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254876840|ref|ZP_05249550.1| preprotein translocase subunit secD [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842861|gb|EET21275.1| preprotein translocase subunit secD [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 645

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 160/542 (29%), Positives = 278/542 (51%), Gaps = 48/542 (8%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRS 79
            I   N L  S    + SA+  N ++LGLDLRGG +L+LE D +  +N  L      + S
Sbjct: 107 YIIAMNMLSNSP--SWLSALGANPMNLGLDLRGGMYLMLEADTNTAINAQLDNSLSTILS 164

Query: 80  FLKKEGIGVFSMR--------------QIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
             K   I +                       ++++ A+S   + +   +    +     
Sbjct: 165 AAKDNNINIVGSTKAEEKSIVKAPQDYVDNGFVSVTLANSIGVDQLKQYLNNEFRKTQ-- 222

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                  N++ +  +  + I  +   I Q+   AI Q + ++R RI+ +G++E+++ + G
Sbjct: 223 -----DPNIIYSVKDNTVFISYNSAKILQLRQDAISQVVTVMRNRINALGVAEASVAQAG 277

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP-NNSKKGFMFGVRFLRDSDGN----Q 240
            +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G      
Sbjct: 278 DNRVVIEIPGMQDATQAKQILGGTSTASFYLVSPVTDRLAAEEQGYKVYALDNGRGYQSY 337

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +       G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+ V+L  
Sbjct: 338 YSLRGAPVAGGADIIGASPSIDHQTGTPIVMVELDRSAASHFRQITGKNIGNPMGVMLVN 397

Query: 301 RVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                    V       G          + A  LA M+++G+L 
Sbjct: 398 TTYEKVKDKDGKEKNVVNKTEKLINVATIQSALGSQFQITGLNQKEANNLALMIKSGALQ 457

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           + ++IV+E  +G  LG D+I KG  +IV  L+ +++F++V Y  +G++A+ ++ +N++L 
Sbjct: 458 VPVHIVQETQIGPSLGKDNIEKGMLSIVVALIAVIVFILVYYRVFGVIANIALVMNLVLI 517

Query: 402 LALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +G+ +A+
Sbjct: 518 VAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHIGYEKAF 577

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+   +K 
Sbjct: 578 TTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKK 637

Query: 521 KS 522
             
Sbjct: 638 LE 639



 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 101/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I     +GP + ++ I KG++ +++
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQETQIGPSLGKDNIEKGMLSIVV 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVIVFILVYYRV-FGVIANIALVMNLVLIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 15/120 (12%), Positives = 33/120 (27%), Gaps = 29/120 (24%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  ++  + L  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIVLALALFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            +   L  + I      +   ++ + + F D   +      +   L
Sbjct: 46  QKD--GNVSTQLVKSIEDTLNTDKIVYQKAELSDDKSNVAIIFKDVEEQLKAKKALKESL 103


>gi|170721628|ref|YP_001749316.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           putida W619]
 gi|169759631|gb|ACA72947.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas putida W619]
          Length = 1059

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 75/595 (12%), Positives = 161/595 (27%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLVLLIAGSISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   I    D++       
Sbjct: 116 TQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAILNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G      S   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTAGDVVAAIREQNRQVAAGQLGAPPAPGSTSFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    +      
Sbjct: 236 SINTQGRLVNEE-------------EFENIIIRAGADGEITRLKDIARVELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +     +      A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+V
Sbjct: 343 VVHTLFEALVLVVLVVILFLQTWRASIIPLLAVPVSLIGTFAVMHLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +           I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIGLGLKPLEATQKAMGEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         + L    L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKDHHAPKDRFSRLLEKLLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F RA    VG        S   LF +    G+ + G            D
Sbjct: 523 APFNRFFDRASHSYVGGVRRVIRSSGIALFVYAGLMGLTYLGFSSTPTGFVPAQD 577



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/218 (10%), Positives = 74/218 (33%), Gaps = 10/218 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS---- 676
            +  +   + A        +  I +++              ++ + I  G   +++     
Sbjct: 831  ITAEINGAAAPGYSSGQAEAAIEKLLNEELPNGMTFEWTDLTYQQILSGNTALLVFPLCV 890

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +A L+       W   L  I  + + +   +    + G + N+     ++ L+G +  +
Sbjct: 891  LLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGGDNNIFTQIGLIVLVGLACKN 950

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ +  +         +     + ++    L   + TS+A  + V+P+      G  +
Sbjct: 951  AILIVEFAKDEQA---KGLDPLAAVLEACRLRLRPILMTSIAFIMGVVPLVFSSGAGSEM 1007

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +  + +  G++      +F+       I  +  +  
Sbjct: 1008 RHAMGVAVFSGMIGVTVFGLFLTPVFFFLIRRFVERRQ 1045



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 86/236 (36%), Gaps = 17/236 (7%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L +     I      G     +  + +   +  +    E +   I     +    
Sbjct: 279 ALRSLLNNQPAVAIPIFQRPGSNAIEISDEVRAKMAELKKDFPEGMDYSIVYDPTIFVRG 338

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E V   +   L+   +V ++               W  ++  +  + + +  T     
Sbjct: 339 SIEAVVHTLFEALVLVVLVVILFLQT-----------WRASIIPLLAVPVSLIGTFAVMH 387

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG   N  ++  ++  IG  V+D +VV + + +N+ L        +   K++ E  G  
Sbjct: 388 LFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIGLGLK---PLEATQKAMGEVTGPI 444

Query: 773 VYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + T++      +    + G  G     FA+ +A   V++A +S+ ++  +   +  
Sbjct: 445 IATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK 500


>gi|115314675|ref|YP_763398.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           holarctica OSU18]
 gi|115129574|gb|ABI82761.1| RND superfamily resistance-nodulation-cell division antiporter
           [Francisella tularensis subsp. holarctica OSU18]
          Length = 645

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 163/548 (29%), Positives = 282/548 (51%), Gaps = 55/548 (10%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + +L   PN+L          A+  N ++LGLDLRGG +L+LE D    ++  L   
Sbjct: 108 IIAMSMLSNSPNWLS---------ALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNS 158

Query: 74  SDELRSFLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFL 119
              + S  K   I + S+ +                  ++++ A+S   + +   ++   
Sbjct: 159 LSIILSAAKDNSINISSLTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLST-- 216

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                        N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E 
Sbjct: 217 -----DFIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEV 271

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDG 238
           ++ + G +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G
Sbjct: 272 SVAQAGDNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNG 331

Query: 239 N----QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                 Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+
Sbjct: 332 RGYQSYYSLKGTAVAGGADIIGASPSIDRQTGAPIVMVELDRSAASHFRQITGKNIGNPM 391

Query: 295 AVVLDGRVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAML 335
            V+L                           V       G          + A  LA M+
Sbjct: 392 GVMLVNTTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMI 451

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           ++G+L + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ 
Sbjct: 452 KSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVIALIAVVVFILVYYRVFGIIANIALV 511

Query: 396 LNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           +N+IL +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +
Sbjct: 512 MNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHI 571

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G+ +A++TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+
Sbjct: 572 GYEKAFTTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFV 631

Query: 515 IRYKKMKS 522
              +K   
Sbjct: 632 YGKRKKLE 639



 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  +I  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIILALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|115380500|ref|ZP_01467473.1| acriflavin resistance protein [Stigmatella aurantiaca DW4/3-1]
 gi|115362492|gb|EAU61754.1| acriflavin resistance protein [Stigmatella aurantiaca DW4/3-1]
          Length = 634

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 68/598 (11%), Positives = 163/598 (27%), Gaps = 44/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L +     GL+ A      +  + +FP       I+          +  E  
Sbjct: 9   RKPVLAWMLMAATIVFGLVAA-----QRIGISQFPDVDFPT-IN--------VSVTWEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   L    +E    ++       + RQ    IT+    SR  +     V   +  
Sbjct: 55  SPEAVESDLIEPLEEAVMQVEGVKSITSTARQGSASITVELDLSRNVDLALQDVQTKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              ++  D    +   T  ++  I+              + +     +  +++       
Sbjct: 115 AQRRMPEDVDPPVTSKTNPEDQPIMWLGVAGPFSQQVVSDYARY---RVREKLQTVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    D  ++     T   +       +               +     
Sbjct: 172 EVTLGGSLERNVRIWVDAQKMDAQGLTVTDVINALQREHVELPAGRIETEGREVNVRVMG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D   +                      I   +      +      +           
Sbjct: 232 EALDLTAL--------------------RSIVLRQQEGATVYLSDVALVEDGFEDTRRLS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +     +    +   LR  +       V   +      S   
Sbjct: 272 RANGNPAQGLGIRKQRGANAVAVAQGVHQVLEELRKDAPEGMEIGVNFDSTRFIEESVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   L  +V +M +      L    +I ++++ T+A++  LG TL   ++ G+ 
Sbjct: 332 IEFELMLACILTALVCWMFLGSLSSTLNVILAIPMSLLGTVAVIYFLGFTLNTFTLLGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+V E I       +    +   G S        + +  +   + + F  
Sbjct: 392 LAVGIVVDDAIMVLENIYRHAEMGKERTRAAREGTSEITFAALAATLAVVAIFIPVVFMK 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP--- 535
           G   R    F +T+ +++L+S   AI++  A    +++  +     +        +    
Sbjct: 452 GIIGRFFLQFGVTLCVAVLLSYVEAITLAPARCAQLLKTSREHRGRVGQWVDRVFVKLEG 511

Query: 536 -DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +       W V    +  +     +F    +  +  +   +L V     V  +
Sbjct: 512 LYARVLDKALTHPWWVLAGAVVLLSVSAFVFQALPSEFVPSQDQSRLTVRLQTAVGSN 569



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 87/284 (30%), Gaps = 10/284 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK- 615
                  +    +   +D      + +       + +    L      D    +      
Sbjct: 218 IETEGREVNVRVMGEALDLTALRSIVLRQQEGATVYLSDVALVEDGFEDTRRLSRANGNP 277

Query: 616 -NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              L   + +  ++VA  + +  V +++ +  P            +   E + +    ++
Sbjct: 278 AQGLGIRKQRGANAVAVAQGVHQVLEELRKDAPEGMEIGVNFDSTRFIEESVHEIEFELM 337

Query: 675 ISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           ++ I   +  W         L  I  + + +  T+      G   N   +  +   +G  
Sbjct: 338 LACILTALVCWMFLGSLSSTLNVILAIPMSLLGTVAVIYFLGFTLNTFTLLGLALAVGIV 397

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+D ++V + +    +             +  +E    ++  ++A     +P+    G +
Sbjct: 398 VDDAIMVLENI---YRHAEMGKERTRAAREGTSEITFAALAATLAVVAIFIPVVFMKGII 454

Query: 794 IG---SFAIPMAFGIVVAASSSIFIAAP-ILLFIYDWRAKNARI 833
                 F + +   ++++   +I +A       +   R    R+
Sbjct: 455 GRFFLQFGVTLCVAVLLSYVEAITLAPARCAQLLKTSREHRGRV 498


>gi|254254282|ref|ZP_04947599.1| Cation/multidrug efflux pump [Burkholderia dolosa AUO158]
 gi|124898927|gb|EAY70770.1| Cation/multidrug efflux pump [Burkholderia dolosa AUO158]
          Length = 1057

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 66/585 (11%), Positives = 161/585 (27%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  +I  IGL+       P      +P  +P + +                  
Sbjct: 10  RPIFAVVLSIVIFAIGLIAI-----PMLPAGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             + ++ ++F      +  A +V   +  
Sbjct: 56  PKEIAESVAEPLEEAINGVEGIMYMKSVAGSDGSLQVVVTFLQGVDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            ++     +     D++       
Sbjct: 116 ALSRLPEEVRQYGVTTQKQSPTPLMYVSLYSPDNSRDSLYLRNYLTLHVKDELSRLTGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL     T + +       N        G      ++    
Sbjct: 176 DVGVYGSGDYAMRIWLDPNRLASRGLTASDVIAAVREQNVQVSAGQLGAEPSPKANDFLV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +  +    +         +           
Sbjct: 236 SINVRGRL-------------RTVQEFGDIVLRNGDDGQVVKLSDVARVELGAGDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L     P                S   
Sbjct: 283 YFNDRHSAVVGIFLSPGANALDVAKAVYAKLDELSKRFPPGVAYRPVWDPTVFVRESIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G+V
Sbjct: 343 VQHTLIEAVVLVVLVVILFLQTWRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAQGLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   ++R        +       F  +  
Sbjct: 463 GVTGQFYRQFAVTIAISTVISAVNSLTLSPALAAKLLRPHGAPKDALTRALDRAFGWLFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R+     G+          +   +             +
Sbjct: 523 PFNRFFERSSGRYHGVVARTLKRRGAVFAVYAALLAATALLFNAV 567



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  +  L G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S RD   +++ E  G  V  ++      +PMA   G        FA+ +A   V
Sbjct: 425 Q---GLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMSGVTGQFYRQFAVTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAVNSLTLSPALAAKLLR 500



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 72/216 (33%), Gaps = 8/216 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              F         D    +    + K +      L      E       +   R   + V 
Sbjct: 824  NGFPAADLIGDADPNVMSSSQAIAKLEQIAKDVLPPGIVLEWTDLSYQQVTQRNAAIVVF 883

Query: 675  -ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ + + + +   ++ W   L  I  + + +   L    L G + N+     ++ L+G 
Sbjct: 884  PLAVMLVFLVLASLYESWTLPLAVILIVPVCMCAALFGVWLSGGDNNVFVQVGLVVLMGL 943

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +  R+   L        D   ++    L   V TS+A     +P+ +    
Sbjct: 944  ACKNAILIVEFARE---LEIQGSGPIDAALEACRLRLRPIVMTSVAFIAGSVPLLIGSGA 1000

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  V  +  + +  G++      +F+     + I  
Sbjct: 1001 GSEVRAATGVTVFAGMLGVTLFGLFLTPVFYVAIRK 1036


>gi|107029113|ref|YP_626208.1| hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|116689728|ref|YP_835351.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia HI2424]
 gi|105898277|gb|ABF81235.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|116647817|gb|ABK08458.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia HI2424]
          Length = 1059

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 143/520 (27%), Gaps = 40/520 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   G+L       PQ  + ++P   P               +V+    
Sbjct: 10  RPVFAWIVALAIVVAGVLAI-----PQLPIAQYPRLAPP-------------RVVITAAY 51

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG--IGVFSMRQIQNK--ITLSFADSRFKENIADKVTL 117
                  +       +   L      +   +         I ++F+     +     V  
Sbjct: 52  PGASTETVDGDVGSIIEESLDGADGLLYYATSSDGHGNLEIDVTFSPGTDPDIALVDVNN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L     +  +         ++L           + +    + R  + ++  +
Sbjct: 112 RLKQVEPRLPQQVVQQGISVFKAANTFLMLVTLTSTDGTRDSAQLGDYLNRYVLRELKRA 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP++LR+       +     + N +      G        
Sbjct: 172 PGVGAAELWDAGE-ALRVWLDPNKLREYDLGADDVIAAIGVQNATVTAGAIGDAPFERGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K +++                +    +   +             +       
Sbjct: 231 QLTATIVVKGQLT-------------SPEEFGRIVLKSKQDGSVVRVADVARVEIGRDDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T        A L     P     +          
Sbjct: 278 SFYSRLNGRPAATVGIQLGPRGNALETSNAIRARLAELSRVLPPGVAMEIPFDGAHFVTI 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV  V+++ +   ++ LV    I + ++     +   G ++ + ++
Sbjct: 338 AIREVVLTLVEAVVLVFCVMWLFLRDLRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTM 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +      R    I           V +
Sbjct: 398 FGLVLAIGILVDDAIVVVESVHRVMEEGVSPRDATRRAMKRIGGAIVGVTAVLTAVFVPM 457

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            FF G      R FA+ M  S+L+S F A+S+  A+   +
Sbjct: 458 AFFPGAVGGIYRQFAVAMIASMLVSSFMALSLTPALCANL 497



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 78/194 (40%), Gaps = 7/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
             +  +     +++ ++P          G       IR+ ++ ++ + + +   +W+  +
Sbjct: 303 ETSNAIRARLAELSRVLPPGVAMEIPFDGAHFVTIAIREVVLTLVEAVVLVFCVMWLFLR 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              + L     + + +         FG+  N+  +  ++  IG  V+D +VV + +    
Sbjct: 363 DLRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTMFGLVLAIGILVDDAIVVVESVH--- 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           ++    +S RD   +++    G  V  +       +PMA +    G +   FA+ M   +
Sbjct: 420 RVMEEGVSPRDATRRAMKRIGGAIVGVTAVLTAVFVPMAFFPGAVGGIYRQFAVAMIASM 479

Query: 806 VVAASSSIFIAAPI 819
           +V++  ++ +   +
Sbjct: 480 LVSSFMALSLTPAL 493



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 82/252 (32%), Gaps = 16/252 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS + +   ++    ++  N     +   R         A   +  +      
Sbjct: 796  RTGDMVPLSAIAAPHWTVGPVMLNRYNGYPSLDISGRAATGTSSGAAMAEMERLAGALPV 855

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I         E         L+      V +S +A+ + +   ++ W   L  +T + L
Sbjct: 856  GIGFDWVDAAREEQVAARQTPLL------VGLSVLAVFMALAALYESWTVPLSVLTIVPL 909

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +      G+  ++     ++T++G +  + +++    R    L  + +  R  + 
Sbjct: 910  GMIGAIAAALARGLPNDVYFKVGMITVVGLAAKNAILIVQYARD---LAGSGVPLRQAVI 966

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA-- 817
             +        + TSMA  + V+P+ +    G     S       G++ A    +  A   
Sbjct: 967  DAAAARFRPIMMTSMAFLLGVVPLVLATGAGAESRRSIGTGAFGGVLAATMFGLVFAPVA 1026

Query: 818  -PILLFIYDWRA 828
              +++ I     
Sbjct: 1027 FRVVVSIGRRGR 1038


>gi|91223993|ref|ZP_01259256.1| putative protein-export membrane protein SecF [Vibrio alginolyticus
           12G01]
 gi|91190904|gb|EAS77170.1| putative protein-export membrane protein SecF [Vibrio alginolyticus
           12G01]
          Length = 300

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 144/284 (50%), Gaps = 6/284 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              + R++   +SI+ ++ +I  L   GLN G+DF GG+   V  ++ +    +   L+ 
Sbjct: 8   NIRKIRYFTTLVSIILTVIAIVALGFKGLNLGLDFTGGMVTEVKVDKQLTNHDLLDVLQP 67

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 S      +  +++R           +     V++ +  I     + +  IVG +
Sbjct: 68  KLGESASVTRSGEDGRWVIRYSAPEDGQTLPS-----VEEVLKPISHQVDVVSNSIVGAQ 122

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           + ++L  +G + ++I  +++L Y+  RF+W  A G++  L  D+   LGFFA+  +EFNL
Sbjct: 123 VGQDLFEQGGLALLICVLSILGYLCFRFEWRLASGSLFALAHDVILVLGFFAITQMEFNL 182

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T  AAVL ++GYS+ND +++ DR+R+ + +   S    D+ D+++  T  R++ TS    
Sbjct: 183 TVFAAVLAILGYSLNDSIIIADRIRE-LLIAKQSWKTEDINDQAVIATFSRTMVTSGTTL 241

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           I+V  + + GG+ +  F+  M  G++    SSI I   +  ++ 
Sbjct: 242 ITVGALWIMGGAPLAGFSTAMFIGVLSGTWSSISIGTVLPEWLK 285


>gi|78048999|ref|YP_365174.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037429|emb|CAJ25174.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1041

 Score =  177 bits (447), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 75/678 (11%), Positives = 182/678 (26%), Gaps = 43/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P               +      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  SR  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDALAGIEGISTIEARSRNGSSDISIEFVQSRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARPPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARELTVADVEAALQNENVELPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLNKGEGGYVVRLGDVARVELTSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +       A   A  ++          V          +    
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVAREARAQAEEVQKSLPKGTNIFVAFDTTTFIDAAVERV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LVL+V+++ +   +  L+   ++ + +I     L     ++ L ++  +VL
Sbjct: 335 YHTLVEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E I+      +    +   G  +    +  +    +   + + F  G
Sbjct: 395 CIGLVVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLI 534
                 R  A+ +  ++ IS F A+++   M   +                +   +    
Sbjct: 455 NTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRAHGQAKPNRFHRWFDGRMQAVSG 514

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +++    R W   + +L ++ +   L     +     +      ++ + P      
Sbjct: 515 AYGRSLERHVHRTWIFALLMLLALGASAWLMGRIPSELAPAEDRGNFQIMIDGPEGAGFD 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +  +  Q+ DI       +K  +      PG   +   +         +     +   T
Sbjct: 575 YTVGQMHQVEDILRPFVGPDKPIVRANPRVPGGFGSSEEMHTGRVSVFLQDWEKRSRPTT 634

Query: 655 EIVGPKISRELIRKGIVG 672
           E+      +  +  G+  
Sbjct: 635 EVADEVQQKLNVLSGVRA 652



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 859  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     S    I +S +  L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDEGRSVHAAIVESASVRLRPILMTSIATVVGAIPLVV 975

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GG       +  + + FG+ ++   S+++       I  +      +
Sbjct: 976  AGGPGSASRATIGVVVIFGVSLSTLLSLYVVPAFYSLIAPFTKSPEAV 1023



 Score = 43.1 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 3/107 (2%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL    T+ + +         F    NL  + A++  IG  V+D +VV + +    + 
Sbjct: 357 RAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENI---QRR 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                       +   +     + T+       LP+    G+    F
Sbjct: 414 IDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEGNTGRLF 460


>gi|71907784|ref|YP_285371.1| hydrophobe/amphiphile efflux-1 HAE1 [Dechloromonas aromatica RCB]
 gi|71847405|gb|AAZ46901.1| Hydrophobe/amphiphile efflux-1 HAE1 [Dechloromonas aromatica RCB]
          Length = 1040

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/541 (12%), Positives = 158/541 (29%), Gaps = 40/541 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+ +         + ++P   P               +++    
Sbjct: 8   RPIFASVISIIIVIAGLVAS-----QVLPIAQYPQIAPPT-------------VLITATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   L   E +  F+     N    IT +F      +  +  V  
Sbjct: 50  PGASAETLAKTVAAPIEEQLNGVENMLYFTSSASANGAVTITATFEVGTNVDMASVNVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++    +L    ++N ++        + +     +    + +  S       +D++   
Sbjct: 110 RVKAAEPRLPEAVRRNGVIVQKRSNDILQVVALKSEGGKYNTLFLSNYASLNIVDELKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P R+ QL  TT ++S      N        G     +  
Sbjct: 170 KGVGDVTIFGAQDYSMRVWLKPDRMAQLGLTTTEVSNAISAQNAQNAAGKIGQEPAPNDQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  K  +                 +    +                 I       
Sbjct: 230 QLVYTVTAKGRLLSEE-------------EFGNIVIRASGPGGVLRLKDIARIELGAYSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +     +        L+         ++          
Sbjct: 277 DQRVTLDGQPTIAMGVFLQTGANALEVADLVKAKMVELKTKFPEAMDYVIPFDTTRFVSA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVL V+F+ +   +  L+   ++ +++I T A L L G ++   ++
Sbjct: 337 SIHEVVHTLVEAMILVLAVVFLFLQSWRATLIPMVAVPISLIGTFAGLWLFGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIA 473
             +VL IG+ VD  I+V E +      +      +      +   A   I        I 
Sbjct: 397 FAMVLAIGIVVDDAIVVLENVERLMAEEKLPPKQAAIKAMHQVTGALIAIVLVLCAVFIP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   + FA+T+ +++++S   A+++  A+   +++ +  ++    P +R F 
Sbjct: 457 VAFLGGIAGQLYKQFAVTVAVAVVLSGVVALTLTPALCALLLKAQHTENKLFAPFNRMFE 516

Query: 534 I 534
            
Sbjct: 517 R 517



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 79/208 (37%), Gaps = 8/208 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 +  +K K  E +      +T         E++   +  +I+    + +++    
Sbjct: 305 DLVKAKMVELKTKFPEAMDYVIPFDTTRFVSASIHEVVHTLVEAMILVLAVVFLFLQ--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T     LFG   N   + A++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPMVAVPISLIGTFAGLWLFGFSINTLTLFAMVLAIGIVVDDAIVVLENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +  +    K++++  G  +   +      +P+A  G   G +   FA+ +A  +
Sbjct: 420 LMAEEKLPPKQAAIKAMHQVTGALIAIVLVLCAVFIPVAFLGGIAGQLYKQFAVTVAVAV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833
           V++   ++ +   +   +   +    ++
Sbjct: 480 VLSGVVALTLTPALCALLLKAQHTENKL 507



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 64/166 (38%), Gaps = 10/166 (6%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
              +     + I + + +  +++ W   +  +  +   +   L    L G+  ++     +
Sbjct: 865  SSLQAFGFAIIMVFLILAAQYEKWSLPVAVVMAVPFALMGALTAIWLRGMPNDIYFQIGL 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG +  + +++ +      + Y   +S  +   ++    L   + TS+A  + V P+
Sbjct: 925  VVLIGLASKNAILIVEFA---AQKYAEGMSAAEAAVEAARLRLRPIIMTSLAFVLGVFPL 981

Query: 787  A---VWGGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDWRA 828
                  G S   S    +  G++ A   +++FI  P+     +   
Sbjct: 982  VKATGAGASARQSMGTGVFGGMLAATFIATLFI--PLFFKWLERGK 1025


>gi|78066464|ref|YP_369233.1| hydrophobe/amphiphile efflux-1 pump, HAE1 [Burkholderia sp. 383]
 gi|77967209|gb|ABB08589.1| Hydrophobe/amphiphile efflux-1 pump, HAE1 [Burkholderia sp. 383]
          Length = 1053

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/520 (13%), Positives = 143/520 (27%), Gaps = 40/520 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   G+L       PQ  + ++P   P               +V+    
Sbjct: 8   RPVFAWIVALAIVVAGVLAI-----PQLPIAQYPRLAPP-------------RVVITASY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG--IGVFSMRQIQNK--ITLSFADSRFKENIADKVTL 117
                  +       +   L      +   +         I ++F+ S   +     V  
Sbjct: 50  PGASTETVDADVGSIIEESLDGADGLLYYETSSDGHGNLEIDVTFSPSTDPDIALVDVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L     +  +         ++L           + +    + R  + ++  +
Sbjct: 110 RLKQVEPRLPQQVVQQGIGVFKAANTFLMLVTLTSTDGARDSAQLGDYLNRYVLRELKRA 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP++LR+       +       N +      G        
Sbjct: 170 PGVGAAELWDA-DEALRVWLDPAKLREYDLGADDVIAAISAQNATVTAGAIGDAPFVRGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K +++                +    +   +             +       
Sbjct: 229 QLTATVVVKGQLT-------------SPEEFGRIVLKSKQDGSVVRVADVARVEIGRDDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T        A L     P     +          
Sbjct: 276 SFYSRLNGRPAATVGIQLGPRGNALETSNAIRARLAELSRTLPPGVAVEIPFDGAHFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV  V+++ +   ++ LV    I + ++     +   G ++ + ++
Sbjct: 336 AIHEVVLTLVEAVVLVFCVMWLFLRDLRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +      R    I           V +
Sbjct: 396 FGLVLAIGILVDDAIVVVESVHRVMEEGVSPRDATRRAMKRIGGAIVGVTAVLTAVFVPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            FF G      R FA+ M  S+L+S F A+S+  A+   +
Sbjct: 456 AFFPGSVGGIYRQFAVAMIASMLVSSFMALSLTPALCANL 495



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 77/194 (39%), Gaps = 7/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
             +  +     +++  +P          G    +  I + ++ ++ + + +   +W+  +
Sbjct: 301 ETSNAIRARLAELSRTLPPGVAVEIPFDGAHFVKIAIHEVVLTLVEAVVLVFCVMWLFLR 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              + L     + + +         FG+  N+  +  ++  IG  V+D +VV + +    
Sbjct: 361 DLRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTMFGLVLAIGILVDDAIVVVESVH--- 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           ++    +S RD   +++    G  V  +       +PMA +    G +   FA+ M   +
Sbjct: 418 RVMEEGVSPRDATRRAMKRIGGAIVGVTAVLTAVFVPMAFFPGSVGGIYRQFAVAMIASM 477

Query: 806 VVAASSSIFIAAPI 819
           +V++  ++ +   +
Sbjct: 478 LVSSFMALSLTPAL 491



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 81/253 (32%), Gaps = 16/253 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS + +   ++    ++  N     +   R         A   +  +      
Sbjct: 794  RTGDMVPLSAIAAPHWTIGPVMLNRYNGYPSLDISGRAATGTSSGAAMAEMERLAGALPA 853

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I         E         L+      V +S +A+ + +   ++ W   L  +T + L
Sbjct: 854  GIGFDWVDAAREEQVAARQTPLL------VGLSVLAVFMALAALYESWTIPLSVLTIVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +      G+  ++     ++T++G +  + +++    R    L    +  R  + 
Sbjct: 908  GMIGAIAAALARGMPNDVYFKVGMITVVGLAAKNAILIVQYARD---LAGHGVPLRQAVV 964

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA-- 817
             +        V TSMA  + V+P+ +    G     S       G++ A    +  A   
Sbjct: 965  DAAAARFRPIVMTSMAFLLGVVPLVLATGAGAESRRSIGTGAFGGVLAATVFGLVFAPVA 1024

Query: 818  -PILLFIYDWRAK 829
              ++  +     +
Sbjct: 1025 FRVVASVGRRGRR 1037


>gi|307309501|ref|ZP_07589157.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti BL225C]
 gi|306900086|gb|EFN30706.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti BL225C]
          Length = 1070

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/686 (10%), Positives = 178/686 (25%), Gaps = 47/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+      L +  + +FP  +P               + +    
Sbjct: 9   RPRFAAVISIVLTLAGLIA-----LTRLPIAQFPDIVPP-------------QVSVTASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      L S +     +         +    +T++FA     +     V  
Sbjct: 51  PGAGADVVEATVAQPLESKVVGVDNMLYMKSTSGADGTYSLTVTFAVGTDPDIATVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  + K++ +         + +   + +      +  S       +D I   
Sbjct: 111 RVALAEPVLPAEVKQSGVSVQKRSSSLMQVIAIHGENDEFDNLFLSNYATINVLDTIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D  RL  L  T   +       N        G + + D  
Sbjct: 171 PGVGDATLFGAQDYSMRVVLDIDRLTNLGLTPTDVINALKTQNVQAAIGRIGAQPMTDDP 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  ++ +  ++                +    +   E             +       
Sbjct: 231 LFQLNIQTQGRLT-------------DPAQFEDVVLRAEPDGSFVRIRDVARVELGSVSA 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +    +           +     E        L A         V          
Sbjct: 278 DSTARINGKPVAMIGTYQAPGANALAATEGVQQAMDRLAAAFPEGLTYTVSYDTSDFVQA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV+IV+F+ +   +  L+   ++ + ++ T A++  +G +L   S+
Sbjct: 338 SVENVEHTLFEAFALVIIVVFLFLGNWRAALIPLIAVPVALVGTFAVILAMGFSLNTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E +          S   +  +        I    +  L   V
Sbjct: 398 LALVLAIGIVVDDAIVVVENVERVMEENPGMSAAQAARLAMGEITGAIVAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDIN 526
            + F  G +    + FA+ + +S++IS   A+++  A+   +++            I   
Sbjct: 458 PVAFIPGLSGQLFQQFAVAVSVSMVISAINALTLSPALCAILLKPHHGPKRGILGWISRG 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                            RA    + +++                   + +G     +   
Sbjct: 518 IDRTRNGYAHVAGSIARRAIIGVILLAVAIGASGWLFRIVPTGFLPSEDQGAFFAEIRLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +   + +  ++      +                    +    +  +K       
Sbjct: 578 EGASFNRTDAVVREVETMLGGIEGVANVTTVTGYSFLDGIAKSSSAFAIVTMKPFAERQD 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++             +    +  
Sbjct: 638 ESASVNAAIGTVMAKGAAIRNAQVFA 663



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 80/223 (35%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 + L  QP   ++  + L  +++     +P            +      +  ++  
Sbjct: 817  NNYRSITLNGQPAPGISSGQALAAMEQVSAATLPPGYSFEWTGTALQELEAAGQTTVILA 876

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +    A L  + +   W   +  + ++ + +   L    + G+ F++ A   ++ LI  +
Sbjct: 877  LALLFAYLFLVALYESWTIPIPVLLSVSVGVAGALVAVLVAGLSFDIYAQIGLVVLIALA 936

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +  +          +  D   +         + TS A  + ++P+    G+ 
Sbjct: 937  SKNAILIVEFAK---FQREKGATIVDAAVEGARTRFRAVMMTSFAFIVGLIPLVTADGAG 993

Query: 794  I---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +    +    +A G++ A+   IFI   + +     R +  ++
Sbjct: 994  MLSRRAVGTGVAGGMLAASLLGIFIIPALYVVFQWLRERGHKL 1036



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 86/246 (34%), Gaps = 11/246 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V          D + +        +   Q    +++A T  ++    ++    
Sbjct: 260 SFVRIRDVARVELGSVSADSTARINGKPVAMIGTYQAPGANALAATEGVQQAMDRLAAAF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWYFALGAITTLIL 702
           P               +  +      +  +   ++I   + F     W  AL  +  + +
Sbjct: 320 PEGLTYTVSYDTSDFVQASVENVEHTLFEAFALVII---VVFLFLGNWRAALIPLIAVPV 376

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N  ++ A++  IG  V+D +VV + + + +      +S      
Sbjct: 377 ALVGTFAVILAMGFSLNTVSLLALVLAIGIVVDDAIVVVENV-ERVMEENPGMSAAQAAR 435

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++ E  G  V  ++      +P+A      G +   FA+ ++  +V++A +++ ++  +
Sbjct: 436 LAMGEITGAIVAITLVLLSVFVPVAFIPGLSGQLFQQFAVAVSVSMVISAINALTLSPAL 495

Query: 820 LLFIYD 825
              +  
Sbjct: 496 CAILLK 501


>gi|229590389|ref|YP_002872508.1| putative cation efflux protein [Pseudomonas fluorescens SBW25]
 gi|229362255|emb|CAY49157.1| putative cation efflux protein [Pseudomonas fluorescens SBW25]
          Length = 1059

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/583 (12%), Positives = 160/583 (27%), Gaps = 34/583 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYALLNVKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G +    +   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVTAIREQNRQVAAGALGAQPAPTATAFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    +      
Sbjct: 236 SVNTQGRLVTEE-------------EFENIVIRSGANGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +              L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIEISNEVRGKMDELKKSFPQGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+V
Sbjct: 343 VVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +          F + +   S     I  +        I    + 
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPFAATEKAMSEVTGPIVATALVLCAVFIPAAFIS 462

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF---FLIP 535
              G   + FA+T+ +S +IS F ++++  A+   ++R         + +        + 
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLRSHDAPKDRFSKVLDKLFGGWLF 522

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                 F +A    VG        S   LF +     + + G 
Sbjct: 523 KPFNRFFDKASHGYVGTVRRVIRGSGIALFLYAGLMVLTWFGF 565



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/216 (10%), Positives = 73/216 (33%), Gaps = 10/216 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS---- 676
            +  +   + A        +  I +++              ++ + I  G   + +     
Sbjct: 831  ITAEINGNAAPGYSSGQAQAAIEKLLKEELPNGMTYEWTDLTYQQILSGNTALFVFPLCV 890

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +A L+       W   L  I  + + +   +    + G + N+     ++ L+G +  +
Sbjct: 891  LLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVIISGGDNNIFTQIGLIVLVGLACKN 950

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ +  +         +     + ++    L   + TS A  + V+P+ +    G  +
Sbjct: 951  AILIVEFAKD---KQAEGLDPLAAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEM 1007

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  + +  G++      + +     + I  +  +
Sbjct: 1008 RHAMGVAVFSGMIGVTFFGLLLTPVFYVLIRRYVER 1043



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 88/236 (37%), Gaps = 17/236 (7%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L +     I      G     +  + +      +    + +   I     +    
Sbjct: 279 ALRSLLNNQPAVAIPIFQRPGSNAIEISNEVRGKMDELKKSFPQGMDYSIVYDPTIFVRG 338

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E V   +   LI   +V ++               W  ++  +  + + +  T     
Sbjct: 339 SIEAVVHTLFEALILVVLVVIL-----------FLQTWRASIIPLVAVPVSLIGTFAVMH 387

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG   N  ++  ++  IG  V+D +VV + + +N++L    +      +K+++E  G  
Sbjct: 388 LFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIEL---GLEPFAATEKAMSEVTGPI 444

Query: 773 VYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           V T++      +    + G  G     FA+ +A   V++A +S+ ++  +   +  
Sbjct: 445 VATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLR 500


>gi|256832597|ref|YP_003161324.1| protein-export membrane protein SecF [Jonesia denitrificans DSM
           20603]
 gi|256686128|gb|ACV09021.1| protein-export membrane protein SecF [Jonesia denitrificans DSM
           20603]
          Length = 366

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 135/312 (43%), Gaps = 13/312 (4%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L     +   +  R     +++   + S+ +L   GLN GI+F+GG Q  +
Sbjct: 3   RRFSQWGNDLYTGARSYDVVGKRRTFFLLALATILISVAILGIRGLNLGIEFRGGSQFTL 62

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 D +     + S+   +++     G     V+        +    V E+ +    
Sbjct: 63  TNVDTSDQTSAVDAVTSVSPSEVARVANVGTNALRVQT-----SELTDIEVQEVRQALAD 117

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                +    +  VGP   +++  K   G+ +  + +++ + + F+ W  A   I  L  
Sbjct: 118 AYGVTADDVASSYVGPTWGQDVSTKAFTGIAVFLVLVMLVMSLYFRAWRSAAATILALFH 177

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM--KLYTTSISFRDL 760
           D+  TLG +AL G E +   +  +LT++ YS+ D VVV+D++R+N          ++ + 
Sbjct: 178 DLIITLGVYALVGWEVSPATIIGLLTILAYSIYDTVVVFDKVRENTDNLNGQYLATYAER 237

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            + ++N+T+ RS+ TS+ A + V  +      + G   +   ++ +  G+ +   SSIF+
Sbjct: 238 ANLAVNQTMVRSINTSVVALLPVASILFIGAFLLGAGTLRDISLALFVGMGIGTYSSIFL 297

Query: 816 AAPILLFIYDWR 827
           A PI + + +  
Sbjct: 298 ATPIQVALRERE 309


>gi|194291259|ref|YP_002007166.1| component of acridine efflux pump, multidrug efflux system
           [Cupriavidus taiwanensis LMG 19424]
 gi|193225094|emb|CAQ71105.1| component of acridine efflux pump, multidrug efflux system
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1050

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 76/690 (11%), Positives = 176/690 (25%), Gaps = 51/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G+L  +     Q  + ++P+  P               + +    
Sbjct: 8   RPVFAWVLALIIVLGGILSIM-----QLPIAQYPNIAPPT-------------ISVTATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   L            S       IT++FA     +  + +V  
Sbjct: 50  PGASAKTLEDSVTSVIEQELNGAPNLLYYNSTSESTGLATITIAFAPGSNVDLNSVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  +         ++    +     + AI+    +  Q ID I   
Sbjct: 110 RLKRVEARLPAEVRQQGVRVDKAGNNYMMFLTVSSKSGTASAIQLGNYVSAQVIDSIRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DPS+L     T   ++      N        G        
Sbjct: 170 PGVGQADLFGT-EYAMRIWLDPSKLTGYNLTPLDVTAAVSEQNVQVAVGELGGTPSPKGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +S                +    +                 +    A  
Sbjct: 229 ELNATVTTESRLS-------------TPEQFANILLRTNPDGSSVRIKDVGRVELGGADY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L           V          
Sbjct: 276 STLARTNGKPSAAIAIKLAPTGNALATATAVRAKMEELSKTFPADYQYTVPYDTSAFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  ++    + + ++ T   L   G ++ + ++
Sbjct: 336 SIEEVIKTLLEAVVLVFLVMYLFLQNFRATIIPTLVVPIALLGTFGALLAFGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    I    +      + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLSPREATRKAMGQITGAIVGITLVLTAVFIP 455

Query: 477 LFFFGG-------GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + FF G               +M  S L+++    ++   ++  +      +        
Sbjct: 456 MAFFSGSVGNIYRQFSLSLIASMAFSALLALTLTPALCATLLKPVEAGHHHEKKGFFGWF 515

Query: 530 RFFLIPDCIAIQFMRAR------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                      Q + AR       + +  +++ +   +            + +G +   V
Sbjct: 516 NRTFATASTGYQGVVARILKRTGRYLIIYALIIAGVVVLFKRLPSSFLPDEDQGYMITVV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L+ ++   +  ++   ++   V      G           +K    
Sbjct: 576 QLPNGATQDRTIGVLKQIEDYYLQKESKVVDQMITVAGFSFFGRGQNGGIAFVRLKDWKE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 T Q            +    I  +
Sbjct: 636 RTGDGETAQALVGRAFGALSFIKDAIIFPL 665



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 82/224 (36%), Gaps = 6/224 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V              +        +       G+++A    +    +++++  P 
Sbjct: 260 VRIKDVGRVELGGADYSTLARTNGKPSAAIAIKLAPTGNALATATAVRAKMEELSKTFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + I  ++ + + + + +++  + +   +     + + +  T
Sbjct: 320 DYQYTVPYDTSAFVKISIEEVIKTLLEAVVLVFLVMYLFLQNFRATIIPTLVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N+  +  ++  IG  V+D +VV + +     +    +S R+   K++ +
Sbjct: 380 FGALLAFGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMSEEGLSPREATRKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
             G  V  ++      +PMA + GSV      F++ +   +  +
Sbjct: 438 ITGAIVGITLVLTAVFIPMAFFSGSVGNIYRQFSLSLIASMAFS 481



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 67/191 (35%), Gaps = 13/191 (6%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   + E   K         + Q+ E         ++        +S I + + +  
Sbjct: 835  TGEAMRAMEENFAKLPPGFGFEWSGQSYEERLAGSQEPILYT------LSLIIVFLCLAA 888

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             ++ W      +  + L +   L    L G+  ++     ++  IG S  + +++ +  +
Sbjct: 889  LYESWSIPFSVLLVVPLGVLGALLGVTLRGMPNDVYFKVGLIATIGLSAKNAILIVEFAK 948

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
                L        +   ++++      + TSMA  + VLP+A+    G     +    + 
Sbjct: 949  D---LQAQGKGLIEATLEAVHLRFRPILMTSMAFILGVLPLAIATGAGSGSQRAIGTGVM 1005

Query: 803  FGIVVAASSSI 813
             G++ A   +I
Sbjct: 1006 GGMITATVLAI 1016


>gi|307153451|ref|YP_003888835.1| acriflavin resistance protein [Cyanothece sp. PCC 7822]
 gi|306983679|gb|ADN15560.1| acriflavin resistance protein [Cyanothece sp. PCC 7822]
          Length = 1064

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 78/646 (12%), Positives = 177/646 (27%), Gaps = 49/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   GL+           +   P+      I +  +L G S   +   
Sbjct: 9   RRPIMTTLLMVAILISGLI-----GYRSLSVSDLPNVDFPT-IQVSANLPGASPETMAAS 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +            S +        +      +ITL F  +R  +  A  V   +  
Sbjct: 63  VATPLEQQ--------FSSIDGLSSMNSTSALGSTQITLQFNLTRDIDGAAQDVQAAIAK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  D                I     N + +    +++  E +     ++ + E  
Sbjct: 115 AQRQLPDDMPSPPSYRKVNPADQPIFFLSLNSEIIPLSTVDKYAETL--IAQRLSMVEGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +    DP  +        +++      N +             +    
Sbjct: 173 AQVQVYGSQKYAVRVLVDPQSISAKGIGLDEVADAIASGNANLPTGTLYGTQQNYTIQAS 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + +  +                       +                 +   +      
Sbjct: 233 GQLNNAED--------------------YRSLIVTYQNGAPVRLGEIAQVTDSVENDKVA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    +E    L   LR          +      +   S +
Sbjct: 273 SWYNGTRAIVLAIQRQPGTNTLAVVEAIQKLLPSLREQIPAAINVNILYDRSESIRESVN 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T      LV+ V+F+ +       +   ++ L+++ T  ++ LL  +L   S+  +
Sbjct: 333 DVQFTLLFTIALVVGVIFLFLRNFWATFIPSLAVPLSIVATFGVMKLLNFSLDNLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  +++ E I       +S   +   G      TI    I+ +   + + F 
Sbjct: 393 TLCVGFVVDDAVVMLENIVRHQEMGESRSRAALNGSKEIGFTILSMTISLVAVFIPVLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--------KSIDINPLS 529
           G   G     FA+T+ ++ILI    ++++   +    +R             +   N   
Sbjct: 453 GGILGRLFHEFAVTISVAILIYGVISLTLTPMLCSRFLRATHHEVPNGNGNGNGHKNSQK 512

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           R  L    +   F     +    S+  ++     +        +   G + + V      
Sbjct: 513 RNLLNFYNLLESFFDFWLYLYEWSLKLALKHH-RITMAISALIVVMTGYLFMTVPKGFIP 571

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           ++ V +  +      DISF      +  +  +  +  +  A    +
Sbjct: 572 NVDVGQITVNLQAAQDISFDEMVKHQQAVASIIRKDKNVEAVNSSV 617



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 93/244 (38%), Gaps = 9/244 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  +    +S++   ++          L   +    +++A    ++ +  
Sbjct: 246 VTYQNGAPVRLGEIAQVTDSVENDKVASWYNGTRAIVLAIQRQPGTNTLAVVEAIQKLLP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
            + E +P +   N      +  RE +      ++ +   ++  I++  + ++        
Sbjct: 306 SLREQIPAAINVNILYDRSESIRESVNDVQFTLLFTIALVVGVIFLFLRNFWATFIPSLA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + L I  T G   L     +  ++ A+   +G+ V+D VV+ + +   ++      S   
Sbjct: 366 VPLSIVATFGVMKLLNFSLDNLSLMALTLCVGFVVDDAVVMLENI---VRHQEMGESRSR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFI 815
                  E +G ++ +   + ++V    ++ G ++      FA+ ++  I++    S+ +
Sbjct: 423 AALNGSKE-IGFTILSMTISLVAVFIPVLFMGGILGRLFHEFAVTISVAILIYGVISLTL 481

Query: 816 AAPI 819
              +
Sbjct: 482 TPML 485



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/282 (10%), Positives = 95/282 (33%), Gaps = 12/282 (4%)

Query: 554  ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               +   + +               + +   + + + L+ V +  +S+    I+      
Sbjct: 763  APDAQYQVIIGVETPYQQDPLALDLLSVRAPSGQLIPLNAVATINKSVGPLTITHLGQLP 822

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                   L+          ++ ++    +   +      + +     +           +
Sbjct: 823  SVTLSFNLKPGVSLGSVTDKINQLAASTLPSSITTGFQGSAQAFQSSLQGL-----GWLL 877

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + I + I ++ +   L  +++L       L    +FG   ++ A   ++ LIG 
Sbjct: 878  VVAIVTIYIVLGILYENFIHPLTILSSLPSAGFGALLTLLIFGYALDIYAFVGIILLIGI 937

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D  R+         +  + I  +        + T+MAA +  LP+A+    
Sbjct: 938  VKKNGIMMIDFARE---ARQQGKTAYNAIYTACIVRFRPIMMTTMAALMGTLPIALGWGA 994

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G        + +  G++ +   ++++      ++     K +
Sbjct: 995  GAEARRPLGLAVVGGLLFSQFLTLYLTPVFYTYMEALSKKPS 1036


>gi|319442161|ref|ZP_07991317.1| preprotein translocase subunit SecF [Corynebacterium variabile DSM
           44702]
          Length = 420

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 130/296 (43%), Gaps = 12/296 (4%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R     I  L ++  I ++   G   GIDF+GG ++ +  +     S V    E      
Sbjct: 29  RRRWYWIYALVTVACILIIAIKGFTLGIDFEGGTKMTMPPSNGATESSVSETFEDATGLA 88

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                  G  +  V        +  Q       + +    +           N   V   
Sbjct: 89  PQSTQTVGSGDSRVIEITAERLTDDQIRDARVALFDEFAPEDNSGTASPDAINDSTVSES 148

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
               + ++ ++G++I    + +YI +R +   A+ A+ +L+LD     G ++L G E + 
Sbjct: 149 WGASITQRMLLGMVIFLAVVFVYISVRLERDMAISAVVSLLLDGIVVAGVYSLVGFEVSP 208

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSMA 778
             V  +LT++ YS+ D V+V+D++ +N +  L +T  ++ + ++ + N+T+ RS+ TS+ 
Sbjct: 209 ATVIGLLTILAYSLYDTVIVFDKVHENTQDVLSSTRSTYGEQVNLATNQTIMRSLNTSLF 268

Query: 779 AFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + I +  +      + G   +   A+    G++    SSI+ +AP+L+ +  ++ +
Sbjct: 269 SVIPIAALLVVAVWLMGVGTLKDLALVQLVGVIAGTISSIYFSAPLLVTLKSFQKR 324


>gi|329959987|ref|ZP_08298483.1| multidrug efflux pump BpeF [Bacteroides fluxus YIT 12057]
 gi|328533121|gb|EGF59890.1| multidrug efflux pump BpeF [Bacteroides fluxus YIT 12057]
          Length = 1042

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/688 (11%), Positives = 182/688 (26%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LGILPIAQYPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAQTVAQTVGIPIERQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++      D      +  S       +DQ+   
Sbjct: 111 RVSVAQSSLPAPVVVQGVTVQKKSSNIVMFLTMKSDNKDYDGLYLSNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS- 236
                          +    DP+ +R    + A +       N        G      + 
Sbjct: 171 RGVGAVNVMGAGDYSMRVWLDPAAMRIRNLSPADVYQAIQTQNVEVSAGNVGQPVGAGNK 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  K  ++                +    I   E G R        +I    A 
Sbjct: 231 NSYQYSLTVKGRLT-------------SPEEFGNIILRTEAGGRVLRLRDVAHIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L           V         
Sbjct: 278 YSVVSQLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMQELSQNFPAGIQYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I TLA+++L G ++   +
Sbjct: 338 ASIDEVMVTFLETTLLVVLVIFLFLQNWRAVVIPCITIPVSLIGTLAVMALFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           +   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENSTRLLDTGRYTARQAVTEAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPL 528
            T ++    G   + FA+T+  S ++S F ++++  A+   +++  K          N L
Sbjct: 458 PTTLVSGISGQLYKQFALTIAASTILSGFNSLTLTPALCALMLQPTKPSKFLLYKGFNHL 517

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL--NYGIDFKGGIQLGVLAN 586
                      + ++  R     IS         LLF          +  G         
Sbjct: 518 YDKTQGVYDKMVSYLLKRPSAAIISYAVFTLIAVLLFAKWPSTFIPEEDDGYFLAVAQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   +   + +      +                 G+         ++K       
Sbjct: 578 PASSLERTQDVGKQINAILDGYPEVKDYIGISGFSIMGGGEQSNAATYFIVLKNWDERKG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T  +        +  +    I  ++
Sbjct: 638 KKHTAASVVQRFNMEAYSIQEAEIFAMV 665



 Score = 42.0 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 18/132 (13%), Positives = 38/132 (28%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L S     +S  N        +  Q           V   +++             T  
Sbjct: 272 DLGSASYSVVSQLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMQELSQNFPAGIQYNVTLD 331

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +    +  +  + + +L+       W   +    T+ + +  TL   ALFG 
Sbjct: 332 TTDVIHASIDEVMVTFLETTLLVVLVIFLFLQNWRAVVIPCITIPVSLIGTLAVMALFGF 391

Query: 717 EFNLTAVAAVLT 728
             N   +  ++ 
Sbjct: 392 SINTLTLFGLIL 403


>gi|94312520|ref|YP_585730.1| hydrophobe/amphiphile efflux-1 HAE1 [Cupriavidus metallidurans
           CH34]
 gi|93356372|gb|ABF10461.1| multidrug efflux system protein [Cupriavidus metallidurans CH34]
          Length = 1050

 Score =  177 bits (447), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/690 (11%), Positives = 179/690 (25%), Gaps = 51/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L  L     Q  + ++P+  P               + +    
Sbjct: 8   RPVFAWVLALIIVLGGALAIL-----QLPIAQYPNIAPPI-------------ITVSTTY 49

Query: 63  DDFVNGFLQM-YSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   L     +  +  +   +    I +SFA     +  + +V  
Sbjct: 50  PGASAKTIEDTVVTPIEQELNGAPNLLYYESQSESSGLATINISFAPGSSSDLNSVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  +         ++    +     S AIE    +  Q +D I   
Sbjct: 110 RLKRVEARLPAEVRQQGVKVDKAGNNYMMFITVSSKSGNSDAIELGNFVSAQVVDSIRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +       N        G        
Sbjct: 170 PGVGAADLFGT-EYAMRIWLDPAKLTGYNLTPLDVKAAVAEQNIQVAVGELGGTPSPSGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    +                 +    A  
Sbjct: 229 ELNATVSTESRL-------------NTPEEFANILLRVNPDGSSVRIKDVGRVELGGADY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +     +          +   T          L     P     V          
Sbjct: 276 STLARINGKPASAIAIKLAPTGNALATATAVRAKMEELSRFFPPDYEFSVPYDTSAFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+    + + ++ T   +   G ++ + ++
Sbjct: 336 SIEEVVKTLLEAVVLVFLVMYLFLQNFRATLIPTLVVPVALLGTFGAMLAFGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    I    +      + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLSPREATRKAMGQITGAIIGITLVLTAVFIP 455

Query: 477 LFFFGG-----------GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + FF G             +     +  L++ ++     ++++ +       KK      
Sbjct: 456 MAFFSGSVGNIYRQFSLSLIASMGFSALLALTLTPALCATMLKPVEAGHHHEKKGFFGWF 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY--GIDFKGGIQLGV 583
           N             I  +  R     I  L  I  + +LF    +     + +G +   V
Sbjct: 516 NRTFTTASGSYQGMIARILKRTGRYVIIYLVIIAGVVVLFKRLPSSFLPDEDQGYMITVV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L+ ++   +  ++   ++   V      G           +K    
Sbjct: 576 QLPTGATQERTIGVLKQIEDYYLQKESKVVDQMITVAGFSFFGRGQNGGIAFVRLKDWKE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 T Q            +    I  +
Sbjct: 636 RPGADQTAQALVGRAFGALSFIKDAIIFPL 665



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 81/218 (37%), Gaps = 6/218 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V              +      + +       G+++A    +    ++++   P 
Sbjct: 260 VRIKDVGRVELGGADYSTLARINGKPASAIAIKLAPTGNALATATAVRAKMEELSRFFPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +         +  I + +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 320 DYEFSVPYDTSAFVKISIEEVVKTLLEAVVLVFLVMYLFLQNFRATLIPTLVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G    FG   N+  +  ++  IG  V+D +VV + +     +    +S R+   K++ +
Sbjct: 380 FGAMLAFGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMSEEGLSPREATRKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
             G  +  ++      +PMA + GSV      F++ + 
Sbjct: 438 ITGAIIGITLVLTAVFIPMAFFSGSVGNIYRQFSLSLI 475



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 69/191 (36%), Gaps = 13/191 (6%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   + E   K         + Q+ E         ++        +S + + + +  
Sbjct: 835  TGEAMRVMEENFAKLPPGFGFEWSGQSYEERLAGSQEPILYT------LSLVIVFLCLAA 888

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             ++ W   +  +  + L +   L    L G+  ++     ++  IG S  + +++ +  +
Sbjct: 889  LYESWSIPVAVLLVVPLGVIGALLGVTLRGMPNDVYFKVGLIATIGLSAKNAILIVEFAK 948

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
                L     S  D   ++++      + TSMA  + VLP+A+    G     +    + 
Sbjct: 949  D---LQAQGRSLVDATLEAVHLRFRPILMTSMAFILGVLPLAIATGAGSGSQRAIGTGVM 1005

Query: 803  FGIVVAASSSI 813
             G++ A   +I
Sbjct: 1006 GGMITATLLAI 1016


>gi|302186717|ref|ZP_07263390.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae 642]
          Length = 1063

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 158/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 SEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     +    Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNDTSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGADGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLSGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDKMLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQD 577



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 89/271 (32%), Gaps = 18/271 (6%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   D  G +++       + L+      ++     +   N                
Sbjct: 785  QQFRQDADQIGQLKVRNNLGEMIPLATFVKVSDTAGPDRVMHYNGFITAEINGAAAPGYS 844

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAMLI 682
               AQ  V +++++++                  ++ + I  G   + +      +A L+
Sbjct: 845  SGQAQAAVEKLLREELP--------TGMIYEWTDLTYQQILSGNTALFVFPLCVLLAFLV 896

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                   W   L  I  + + +   +    + G + N+     ++ L+G +  + +++ +
Sbjct: 897  LAAQYESWSLPLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVE 956

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +         +S  D + ++    L   + TS A  + V+P+ +    G  +  +  +
Sbjct: 957  FAKD---KQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGV 1013

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  G++      + +     + I ++  + 
Sbjct: 1014 AVFSGMLGVTFFGLLLTPVFYVLIRNYVERQ 1044



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVAATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLSGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|89092654|ref|ZP_01165607.1| cation/multidrug efflux pump protein [Oceanospirillum sp. MED92]
 gi|89083166|gb|EAR62385.1| cation/multidrug efflux pump protein [Oceanospirillum sp. MED92]
          Length = 1016

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 79/682 (11%), Positives = 185/682 (27%), Gaps = 41/682 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  ++  +GLL        +  +  +P                         
Sbjct: 9   KRPVLATVMSILVLLVGLLA-----YERLTVREYPKIDLPVVT---------VETTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++         R   ++IT++F   R  ++ A  V   +  
Sbjct: 55  SASIIETQVTQIIEDSLSGIEGIDFMNSISRTENSQITITFKIDRDPDSAAADVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    ++  T      I+    N D    + +E S    +Q  DQ+       
Sbjct: 115 ITGDLPEDVDPPVVAKTEADAQPIIWLAFNSD--RHNIMEVSDIADQQVKDQLQTVSGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    DP+R+         +                         G   
Sbjct: 173 NVMIFGERKYSMRIWLDPARMAAYKVIPKDIEETLR--------------------GQNV 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +      S           D    +    +                 +      V    
Sbjct: 213 EIPAGRIESKEREFTLLTKTDVNDIEAFKQLIIRNDEGYPVRIQDVARVEIAPENVRRIT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +            A L           V   +      S   
Sbjct: 273 RYKGESAVALGVVKQSTANPLDVSNGIREKLAKLAPTLPEGMNVEVAYDSSIFIDESIKS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++VLF  +   +  L+   +I L++I   A++  +  ++   ++  +V
Sbjct: 333 VYQTLIQAGVLVVLVLFFFLRNIRATLIPVVTIPLSLIGAFAMMYWMDFSINTLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD  I++ E I        S   +   G       +  + +  +     + F  
Sbjct: 393 LAIGLVVDDAIVMLENIYRHVEAGLSPIQAAFKGAKEIGFAVLATTVVLVAVFAPVAFSE 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIPD 536
              G     FA+T+  ++++S F A+++   M   +     +     ++       L   
Sbjct: 453 GRTGKLFTEFALTLAGAVVVSTFIALTLSPMMSSRLLKHETRHSAIFNLIEGFLQGLTDG 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R   + + I+ +       +   L   +         +      D S V  
Sbjct: 513 YKNLLNKLLRSRLLAVVIMLASFGGAAFYYMQLPQELAPYEDRGTILNFALAPDGSSVDY 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
                +  + +         F   + +    +    + L+  +++  +   ++  Q  ++
Sbjct: 573 IDRYTRQIEGTISQTPETDRFFAVVGFPSETNAMVFQGLDRWEERDRKQQAIAQEQTPKL 632

Query: 657 VGPKISRELIRKGIVGVIISAI 678
            G           +  +  S I
Sbjct: 633 YGGIPGIMSFSLNLPSLGQSFI 654



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 86/250 (34%), Gaps = 13/250 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS +    E++   +++  +         +L        A T + + + +   
Sbjct: 769  QHGDMVQLSNLVEVRETVAPRELNHFDKVKAVKIQAQLAPGYSLGEALTFLEQNLAEIAP 828

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
            +     T  + E      S ++         ++ I + + +  +F+ +   L  + ++  
Sbjct: 829  QATYDYTGPSREFKTSSSSMQIT------FALALIVVFLVLAAQFESFKNPLIIMLSVPP 882

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L      G   ++ +   ++TL+G      +++ +      +L       R  I 
Sbjct: 883  AIFGALFALHYSGGSLSVYSQIGLITLVGLVTKHGILIVEFAN---QLQDQGRDLRSSII 939

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++ +  L   + T+ A  +  +P+A+    G          +  G+      ++F+   +
Sbjct: 940  EAASLRLRPILMTTGATVLGAVPLAIAFGAGAESRQQIGWVIVGGMTFGTLLTLFVIPTV 999

Query: 820  LLFIYDWRAK 829
              ++     K
Sbjct: 1000 YSYLGKRTFK 1009



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  + T+ L +              N   + A++  IG  V+D +V+ + +    +
Sbjct: 355 IRATLIPVVTIPLSLIGAFAMMYWMDFSINTLTLLALVLAIGLVVDDAIVMLENI---YR 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                +S      K   E     + T++       P+A   G        FA+ +A  +V
Sbjct: 412 HVEAGLSPIQAAFKGAKEIGFAVLATTVVLVAVFAPVAFSEGRTGKLFTEFALTLAGAVV 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           V+   ++ ++  +   +     +++ I
Sbjct: 472 VSTFIALTLSPMMSSRLLKHETRHSAI 498


>gi|254250293|ref|ZP_04943613.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
 gi|124876794|gb|EAY66784.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
          Length = 1057

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/585 (11%), Positives = 160/585 (27%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  +I  +GL+       P      +P  +P + +                  
Sbjct: 10  RPIFAVVLSIVIFALGLISI-----PMLPAGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             + ++ ++F      +  A +V   +  
Sbjct: 56  PKEIAESVAEPLEEAINGVEGIMYMKSVAGSDGSLQVVVTFLQGVDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            ++     +     D++       
Sbjct: 116 ALSRLPDEVRQYGVTTQKQSPTPLMYVSLYSPDNSRDSLYLRNYLTLHVKDELSRLTGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL     T + +       N        G       +    
Sbjct: 176 DVGVYGSGDYAMRLWLDPNRLASRGLTASDVIAAVREQNVQVSAGQLGAEPSPKKNDFLV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +  +    +         I           
Sbjct: 236 SINVRGRL-------------RTVQEFSDIVLRNGDDGQVVKLSDVARIELGAGDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L     P                S   
Sbjct: 283 YFNDRHSAVVGIFLSPGANALDVAKAVYAKLDELSKRFPPGVAYRPVWDPTVFVRESIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G+V
Sbjct: 343 VQHTLIEAVVLVVLVVILFLQTWRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAQGLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS   ++++  A+   ++R        +       F  +  
Sbjct: 463 GVTGQFYKQFAVTIAISTVISAINSLTLSPALAAKLLRPHGAPKDALTRALDRAFGWLFH 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R+     G+          +   +             +
Sbjct: 523 PFNRFFERSSDRYHGVVGRTLKRRGVVFAVYAALLAATALLFNAV 567



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  +  L G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S RD   +++ E  G  V  ++      +PMA   G        FA+ +A   V
Sbjct: 425 Q---GLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMSGVTGQFYKQFAVTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAINSLTLSPALAAKLLR 500



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 77/208 (37%), Gaps = 10/208 (4%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII---SAIAML 681
             GD+  +T        K+ +I          +    +S + + +    +++   + + + 
Sbjct: 832  IGDADPKTMSSSQAIAKLQQIAKDVLPPGITLEWTDLSYQQVTQSNAAIVVFPLAVMLVF 891

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +   ++ W   L  I  + + +   L    L G + N+     ++ L+G +  + +++
Sbjct: 892  LVLASLYESWTLPLAVILIVPVCMCAALFGVWLSGGDNNVFVQVGLVVLMGLACKNAILI 951

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +  R+   L        +   ++    L   V TS+A     +P+ +    G  V  + 
Sbjct: 952  VEFARE---LEIQGKGVVEAALEACKLRLRPIVMTSVAFIAGSVPLLIGSGAGSEVRAAT 1008

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + +  G++      +F+     + I  
Sbjct: 1009 GVTVFAGMLGVTLFGLFLTPVFYVAIRK 1036


>gi|170743177|ref|YP_001771832.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium sp. 4-46]
 gi|168197451|gb|ACA19398.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium sp. 4-46]
          Length = 1062

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/583 (14%), Positives = 160/583 (27%), Gaps = 40/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +   +I  IG +           + ++P  +P               +V+    
Sbjct: 10  RPIFASVTSIVILIIGYVS-----YISLPVSQYPEIVPPT-------------VVVRASY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +       +   +                 N ++T++FA     +     V  
Sbjct: 52  PGANAETVAATIATPIEQEINGVDNMLYMSSLSTNDGNMQLTITFALGTNLDIANVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L  D +   +         +++               +  I  +  DQ+   
Sbjct: 112 RLSVATPRLPPDVRNLGVTVRKSSPDLMMVVHLLSPDNTYDQNYIANYIYLRIRDQLLRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP +L     +T  +       N        G      S 
Sbjct: 172 NGVGDITVFGGSEYALRLWLDPDKLAAYQLSTTDVIGALQEQNVQVASGALGAPPSPTSQ 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q +V+ +                 +       +       R         +       
Sbjct: 232 AFQLVVQTQGR--------------FQDPNEFRKVIVKASEGRLVRISDIARVEMGQKDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +     ET   L   L     P     +          
Sbjct: 278 VTQSFLNGQPAIGVGVFQRPGTNALEAAETVQSLMKELAKDFPPGLEYRIAYNPTEFIAE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  LV   +I ++++ T A+++ LG +L   ++
Sbjct: 338 SVHEVYKTLGEAVVLVVVVILVFLQSWRTALVPIIAIPVSLVGTFAVMAALGFSLNNLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E +        S   +          A   I        I T
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERNISDGLSPGEAAHKTMDEVGGAVVAIALVLSAVFIPT 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   R FA+T+  S +ISMF ++++  A+   +++           L+R    
Sbjct: 458 AFIPGISGQFYRQFALTIAASTIISMFNSLTLSPALCKLLLQPHHAHGRSRFVLARLGSF 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
                 +   A   G   +I F       L      YG    G
Sbjct: 518 AANTFNRAFDATANGYAATIRFLTGRTVPLLVMLALYGGVIAG 560



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 5/139 (3%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  +   +        L   + N+     ++ LIG +  + +++ +     +
Sbjct: 903  SWALPLAILLVVPTGVLAAFAGVQLRAQDNNILTQIGLIVLIGLAAKNAILIVEFAH-QI 961

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +           + ++    L   + T+ A  + V+P+A+    G  +  +    + FG+
Sbjct: 962  EESEHRGPVAAAV-EACRLRLRPILMTAFAFILGVVPLAIATGPGAEMRQALGTAVLFGM 1020

Query: 806  VVAASSSIFIAAPILLFIY 824
            + A    +F+     + I 
Sbjct: 1021 LGATVFGLFLTPVFYVVIR 1039



 Score = 42.4 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 56/136 (41%), Gaps = 9/136 (6%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              + AI    + +  T    A  G   N   +  ++  IG  V+D +VV + + +N+  
Sbjct: 368 LVPIIAI---PVSLVGTFAVMAALGFSLNNLTLFGLVLAIGIVVDDAIVVVENVERNISD 424

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVV 807
               +S  +   K+++E  G  V  ++      +P A      G     FA+ +A   ++
Sbjct: 425 ---GLSPGEAAHKTMDEVGGAVVAIALVLSAVFIPTAFIPGISGQFYRQFALTIAASTII 481

Query: 808 AASSSIFIAAPILLFI 823
           +  +S+ ++  +   +
Sbjct: 482 SMFNSLTLSPALCKLL 497


>gi|123440823|ref|YP_001004814.1| multidrug efflux protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087784|emb|CAL10570.1| multidrug efflux protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 1041

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/684 (10%), Positives = 189/684 (27%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      +    + ++P   P +                    
Sbjct: 9   RPVFAWVIAIVIMLGGAVA-----MQTLPIAQYPDVAPPSV---------SIKATYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + L        S        I  +F      +    +V   +Q 
Sbjct: 55  AETLENSVTQVIEQELTGLDGLLYFSSSSSSDGKANIVATFKQGTNADTAQVQVQNKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + +   +  T  +   +++     ++      + +  ++    D +   E   
Sbjct: 115 ALTRLPTEVQSQGVTVTKSQTNFLLIMALYDEKDKHTGTDIADYMVSNLQDPLARLEGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P++L       + +       N        G            
Sbjct: 175 SVQVFGSQ-YAMRIWLNPTKLAAYSLMPSDIQTAIEAQNTQVSAGKIGALPSGKEQQLTA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +             +           
Sbjct: 234 TVMAQSRL-------------KTPEQFNNIIVKSDSTGAVVRLSDVARVELGNEDYSVTT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T E     AA               + +      S   
Sbjct: 281 RLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELSLPDGYKIAYPKDSTDFIKVSVEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ + ++ T  +L++ G ++   ++ G+V
Sbjct: 341 VVKTLIEAILLVVIVMYVFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    R++      + +       S +    +      + + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERVMREDNLPPREATEKSMGEISSALVGIALVLSAVFLPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK--------SIDINPLS 529
           GG      R F+IT+  ++ +S+  A+++  A+    ++               + +   
Sbjct: 461 GGATGVIYRQFSITIVSAMALSVLVALTLTPALCAAFLKPNHKPPSNTGFFGWFNRHYDR 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R+  + +  ++L  +  I  +         + +G + +        
Sbjct: 521 MQTRYESMVGNVIHRSLRYLLIYAVLIVVMGILFIRLPTGFLPTEDQGDVMVQYTLPAGA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                    ++++   ++ +  + +  F +      G           +K         +
Sbjct: 581 TSGRTMEVSKAVENYFLTQEKDNTKAVFTISGFGFSGSGQNAGMAFIALKNWSERPGSEN 640

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
           T         K    +    I  +
Sbjct: 641 TATAIADRAMKALSIIRDAQIFSM 664



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 99/287 (34%), Gaps = 6/287 (2%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            G   S      +  ++    L     F   I         V LS V       +   ++
Sbjct: 220 IGALPSGKEQQLTATVMAQSRLKTPEQFNNIIVKSDSTGAVVRLSDVARVELGNEDYSVT 279

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +        +  +     +++A    ++    +    +P               +  + 
Sbjct: 280 TRLNGHPAAGIAVMLAPGANALATAERVKAKAAEFELSLPDGYKIAYPKDSTDFIKVSVE 339

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           + +  +I + + ++I +++  +     L     + + +  T G  A+FG   N   +  +
Sbjct: 340 EVVKTLIEAILLVVIVMYVFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSINTLTLFGM 399

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  IG  V+D +VV + +     +   ++  R+  +KS+ E     V  ++      LPM
Sbjct: 400 VLSIGLLVDDAIVVVENV--ERVMREDNLPPREATEKSMGEISSALVGIALVLSAVFLPM 457

Query: 787 AVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A +GG+       F+I +   + ++   ++ +   +         K 
Sbjct: 458 AFFGGATGVIYRQFSITIVSAMALSVLVALTLTPALCAAFLKPNHKP 504



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 71/729 (9%), Positives = 187/729 (25%), Gaps = 62/729 (8%)

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I +  A        A++V          L                               
Sbjct: 290 IAVMLAPGANALATAERVKAKAAEFELSLPDG-----------------YKIAYPKDSTD 332

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
                  E+++  I+ I +    +     +     +P    P  L    G  A   +   
Sbjct: 333 FIKVSVEEVVKTLIEAILLVVIVMYVFLQNIRATLIPAIAVPVVLLGTFGVLAIFGYSIN 392

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                      G   + D+      VE  +    +    AT     +    +V I+    
Sbjct: 393 TLTLFGMVLSIG-LLVDDAIVVVENVERVMREDNLPPREATEKSMGEISSALVGIALVLS 451

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
                        G          V    +      +    +   F        +     
Sbjct: 452 AVFLPMAFFGGATGVIYRQFSITIVSAMALSVLVALTLTPALCAAFLKPNHKPPSNTGFF 511

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL--------------Y 383
           G      + ++ R                 I A L++++  + +                
Sbjct: 512 GWFNRHYDRMQTRYESMVGNVIHRSLRYLLIYAVLIVVMGILFIRLPTGFLPTEDQGDVM 571

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            ++ L A  +    + ++ A+ +         + A   +       S             
Sbjct: 572 VQYTLPAGATSGRTMEVSKAVENYFLTQEKDNTKAVFTISGFGFSGSGQNAGMAFIALKN 631

Query: 444 KNQ-----SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
            ++     +   ++     +A S I D+ I ++    V          G +      +  
Sbjct: 632 WSERPGSENTATAIADRAMKALSIIRDAQIFSMTPPAV-------DGLGQSNGFTFELQA 684

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           +  T+   +  +   +I       I  +  +        + +     +   +G+SI    
Sbjct: 685 AGDTSREQLLTLRDQLIGNASKDPILTSVRANTLQQMPQLQVDIDNDKAAALGLSISDVN 744

Query: 559 CSICLLFTHGLNYGIDFKGGIQ---LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            ++   +          +G ++   +    +       +           ++  +     
Sbjct: 745 ATLSAAWGGTYINDFIDRGRVKKVYMQGDVDSRSKPEDINQWFVRGSSDAMTSFSAFATT 804

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ----------NTEIVGPKISREL 665
            ++   +     +   +  ++      +                   +    G      L
Sbjct: 805 RWIYGPETLSRYNGQASYEIQGQAASGSSSGTAMDRMEKLAAELPGTSYSWSGLSYQERL 864

Query: 666 IRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
                + +  IS + + + +   ++ W      +  + L I   +    L G+E ++   
Sbjct: 865 ASGQALSLYAISILVVFLCLAALYESWSVPFSVMMVIPLGIIGAVAAATLRGLENDIYFQ 924

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            A+LT +G +  + +++ +   +    Y           +     L   + TS+A    V
Sbjct: 925 VALLTTLGLASKNAILIVE-FAE--AAYLRGEPLVAAALQGAATRLRPILMTSLAFVAGV 981

Query: 784 LPMAVWGGS 792
           +P+A+  G+
Sbjct: 982 MPLAISTGA 990



 Score = 47.4 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 67/542 (12%), Positives = 140/542 (25%), Gaps = 51/542 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSH-LVLEV 60
            R+  +L+I   +I  +G+L        +      P+    + +       G +    +EV
Sbjct: 535  RSLRYLLIYAVLIVVMGILFI------RLPTGFLPTEDQGDVMVQYTLPAGATSGRTMEV 588

Query: 61   DEDDFVNGFLQMYSDELRS--FLKKEGIGVFSMRQIQNKITL----SFADSRFKENI-AD 113
                  N FL    D  ++   +   G            I L        S       AD
Sbjct: 589  S-KAVENYFLTQEKDNTKAVFTISGFGFSGSGQNAGMAFIALKNWSERPGSENTATAIAD 647

Query: 114  KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +    L  +            +    +        Q   D      +    ++I      
Sbjct: 648  RAMKALSIIRDAQIFSMTPPAVDGLGQSNGFTFELQAAGDTSREQLLTLRDQLIGNASKD 707

Query: 174  IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
              ++     R  + + + QL  + D  +   L  + + ++                    
Sbjct: 708  PILT---SVRANTLQQMPQLQVDIDNDKAAALGLSISDVNATLSAAWGG----------- 753

Query: 234  RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                            + I+             +  VD         ++F     +    
Sbjct: 754  ----------------TYINDFIDRGRVKKVYMQGDVDSRSKPEDINQWFVRGSSDAMTS 797

Query: 294  LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +     R +  P          +          +    AM R   L  +L        G
Sbjct: 798  FSAFATTRWIYGPETLSRYNGQASYEIQGQAASGSSSGTAMDRMEKLAAELPGTSYSWSG 857

Query: 354  ADLGSDSIYKGTCAIVAGLVLIVLFMIVL---YGKWGLVADFSIFLNVILTLALLSLLGA 410
                         ++ A  +L+V   +                I L +I  +A  +L G 
Sbjct: 858  LSYQERLASGQALSLYAISILVVFLCLAALYESWSVPFSVMMVIPLGIIGAVAAATLRGL 917

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
               +     ++  +GLA  + IL+ E       + + +  +   G +     I  +++  
Sbjct: 918  ENDIYFQVALLTTLGLASKNAILIVEFAEAAYLRGEPLVAAALQGAATRLRPILMTSLAF 977

Query: 471  LIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            +   + L      G  +       +    L +   A+  V    + I R    KS     
Sbjct: 978  VAGVMPLAISTGAGANSRISIGSGIIGGTLTATALAVFFVPLFFVLIRRVFSGKSKKTTE 1037

Query: 528  LS 529
              
Sbjct: 1038 HK 1039


>gi|226951520|ref|ZP_03821984.1| multidrug efflux protein [Acinetobacter sp. ATCC 27244]
 gi|226837739|gb|EEH70122.1| multidrug efflux protein [Acinetobacter sp. ATCC 27244]
          Length = 1033

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/690 (12%), Positives = 201/690 (29%), Gaps = 46/690 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  +GLL  L        ++R+P   P               + +    
Sbjct: 9   RPIFAGVLAIIVMAVGLLAVL-----NLPVERYPDIAPP-------------RITVATSY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   +K           S     ++I+L FA     +    +V  
Sbjct: 51  SGADAQAVEDSVTQVLEQQIKGIDHLLYFSSSSDASGNSRISLFFAQGTDPDQAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + G  ++L  D ++  +        S ++         S  I+ S  +       +   
Sbjct: 111 AINGAINRLPEDVQRQGVTVRKSLSDSFMVIGLADSSGRSTNIDISDYLTNHFELNLSRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP +L+Q   + +++       N        G     +  
Sbjct: 171 EGVGEISVFGSQ-YAMRIWLDPKKLQQYQLSVSEVRTALESQNAQVAAGAIGQLPSTEDQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     +                 +    I          +      I       
Sbjct: 230 YLNARVTSGSLL-------------QTPEQFEQIIIKAHGDGSLVYLKDIARIEVGAENY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +    S     +   T +        ++       + +    +      
Sbjct: 277 QVFNRLNGYPASGLSVSLAVGANVMQTADLIYQEVERIKKDLPEGYIVVYPRDDTPFVKE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV++V+F+ +   +  L+   ++ + ++ T A+L++LG ++   ++
Sbjct: 337 SMSQVLATLIEAIILVVLVMFLFLQNWRATLIPAVTVPVVILGTFAVLAVLGMSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     + +     +           +    +      + 
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMHEQKLDAKQASIQSMQEISGALVGITLVLTAVFIP 456

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPL 528
           + FF    G   R F+IT+  ++ +S+  A+ +  A+   +++ +  K     S +    
Sbjct: 457 MSFFTGATGIIYRQFSITLVAAMSLSLLVALILTPALCAILLKQQHQKAKWAQSFERGLD 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                                +   +L S  +             + +G + +       
Sbjct: 517 RVRAAYLALAKKAIQVKSVAIISFIVLISAFAWVYRELPTSFLPQEDQGLLGVQFRLAEG 576

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             +S  +   + +    +S +  +     ++  +   G      +    +K         
Sbjct: 577 TPMSQTQLVGQQISDYFLSEEKDNLNGIMVIHGRNFSGTGQNLGQAFVSLKHWDERQGSE 636

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q       K   +  +  I+ V+ + I
Sbjct: 637 NSAQAIRARAMKHFAQNNQARIMVVMPAVI 666



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/210 (15%), Positives = 86/210 (40%), Gaps = 8/210 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +    + +E +KK + E   +   ++      +   +++   I  +I+  + M +++ 
Sbjct: 302 QTADLIYQEVERIKKDLPEGYIVVYPRDDTPFVKESMSQVLATLIEAIILVVLVMFLFLQ 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L    T+ + I  T    A+ G+  N   + A++  IG  V+D +VV + + 
Sbjct: 362 ---NWRATLIPAVTVPVVILGTFAVLAVLGMSINTLTLFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               ++   +  +    +S+ E  G  V  ++      +PM+ + G+       F+I + 
Sbjct: 418 -ERIMHEQKLDAKQASIQSMQEISGALVGITLVLTAVFIPMSFFTGATGIIYRQFSITLV 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             + ++   ++ +   +   +   + + A+
Sbjct: 477 AAMSLSLLVALILTPALCAILLKQQHQKAK 506



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 71/203 (34%), Gaps = 8/203 (3%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
              DS +     + ++        +  I           ++   + I   +IS   + + +
Sbjct: 822  EADSASGFSSGQGMQALTELANNMPGIDLAWSGLSYQEQQSSNQAIWLYVISIAFIFLCL 881

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L I  T+ F   FG   ++    A+LT IG S  + +++ + 
Sbjct: 882  AALYESWSIPSVVMAAIPLGIGGTILFSYWFGFANDIYFQIALLTTIGLSCKNAILMVEF 941

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
                  L     S  D   ++    L   + TS+A    V+P+      G     +    
Sbjct: 942  A---ASLQQQGKSLLDSALRAAGLRLRPILMTSIAFGAGVIPLMFSTGAGALSRQAIGYS 998

Query: 801  MAFGIVVAASSSIFIAAPILLFI 823
            +  G+V      + I  P++  +
Sbjct: 999  VFGGVVFGTIL-VLIFIPLMYVL 1020


>gi|319428568|gb|ADV56642.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella putrefaciens 200]
          Length = 1043

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/573 (12%), Positives = 160/573 (27%), Gaps = 41/573 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  IG++       PQ  + R+PS  P               + +    
Sbjct: 8   RPVFAWVIALFIVLIGVIAI-----PQLPISRYPSVAP-------------VSVSIYAAY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L      L       +K       S+    + +IT +F      E     V  
Sbjct: 50  PGATPQTLNDSVVSLVERELSGVKNLLYFESSVDSSGSAQITATFKPGTNAEMAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V  +L    +++ L   +     +++            I  +  + R  ++++   
Sbjct: 110 RIKAVEPRLPQVVRQSGLQVESAASSFLMMIGMTSPNGQFDEIALNDYLARNIVEELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L     T   ++      N        G   +    
Sbjct: 170 DGVGRVQLFGA-EQAMRVWVDPNKLTAYNLTMNDLATAIEQQNAQIAPGRLGDEPVLQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++S                +    +   +    +        +       
Sbjct: 229 RLTIPLTVQGQLS-------------TPEEFAAIVLRADADGAKLVLADVARVELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                        A        +   T        A L           V          
Sbjct: 276 GFSNRENGVAATSAAIQLSPGANAVRTASAVRKCLAELAPMMPTGMNYSVPFDTAPFVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+      + ++ T A++ L G ++   ++
Sbjct: 336 SIEKVIYTLFEAMALVFMVMFLFLQNLRYTLIPAIVAPIALLGTFAVMLLAGFSINSLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERLMATQGLSPREATSQAMKEITGAVIGITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      + F ++M +SIL S F A+++  A+   ++R               F 
Sbjct: 456 MAFGSGSVGVIYQQFTLSMAVSILFSAFLALTLTPALCATLLRPVSADHHQKGGFFGAFN 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
                       R   +       + +  +L  
Sbjct: 516 RSFERLTAGYSERVARLVGRSGRMMAAFAVLCM 548



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 73/196 (37%), Gaps = 12/196 (6%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFA 693
           L  +   +   +  S   +T         ++I      + +  + M +++  +R+    A
Sbjct: 310 LAELAPMMPTGMNYSVPFDTAPFVKVSIEKVIYTLFEAMALVFMVMFLFLQNLRYTLIPA 369

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           + A   L      T     L G   N   +  ++  IG  V+D +VV + +     + T 
Sbjct: 370 IVAPIAL----LGTFAVMLLAGFSINSLTMFGMVLAIGIIVDDAIVVVENV--ERLMATQ 423

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAA 809
            +S R+   +++ E  G  +  ++    +V     +G   +      F + MA  I+ +A
Sbjct: 424 GLSPREATSQAMKEITGAVIGITL-VLTAVFIPMAFGSGSVGVIYQQFTLSMAVSILFSA 482

Query: 810 SSSIFIAAPILLFIYD 825
             ++ +   +   +  
Sbjct: 483 FLALTLTPALCATLLR 498



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 67/180 (37%), Gaps = 6/180 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +++   +P            +  +   +  ++ ++ + +  L+   +   W   L  
Sbjct: 835  AEMERLVAQLPQGFAIAWTGASLQEHQSTAQAPLLMLLSALVVFLVLAALYESWSIPLSV 894

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +  + L +   +    L  +  ++     ++T+IG S  + +++ +  R   +L+    +
Sbjct: 895  MLVVPLGLLGAVTAVILRDMPNDVFFKVGMITIIGLSAKNAILIVEFAR---QLHAEGHT 951

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSI 813
              D    +    L   + TS+A  + V+P+ +  G       +    +  G++     +I
Sbjct: 952  LIDAAVTAARLRLRPILMTSLAFTLGVVPLMLASGASAETQHAIGTGVFGGMLSGTLLAI 1011


>gi|332978407|gb|EGK15124.1| protein-export membrane protein SecF [Psychrobacter sp. 1501(2011)]
          Length = 400

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 85/269 (31%), Positives = 141/269 (52%), Gaps = 4/269 (1%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I FM+        S +  + SI  +F +GLN G+DF GG+   V   + V+ + V  +LE
Sbjct: 91  IPFMKLEKPMAIFSAIMILVSIAAIFINGLNLGLDFTGGVSADVKYEKSVEQAEVIQSLE 150

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                D   Q   G    LVRL  Q   S     + E + K +      ++I N  I+G 
Sbjct: 151 KAGFEDAVVQYLGGTTELLVRLPPQ---SDNVEGLNESLGKALDLPNNHASISNVNIIGS 207

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++  E+    ++ ++ +   M++Y+ +RF++  A+GA+  L+ D   T+G FALF   F+
Sbjct: 208 QVGGEIYLSSMLAILTALGMMMLYVAVRFQFKLAVGALLALVHDAVVTVGIFALFQFPFD 267

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           LT +AA+L LIGYS+ND +VV+DR+R+N +      + R ++D S+ ETL R++ T    
Sbjct: 268 LTVLAAILALIGYSLNDTIVVFDRIRENFRR-VRDATPRQIVDLSLTETLRRTIMTVSTV 326

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            + VL M   GG  +  F++    G++  
Sbjct: 327 LVVVLAMLFLGGDGLFWFSVAFFIGLIAG 355


>gi|28901063|ref|NP_800718.1| preprotein translocase subunit SecF [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837117|ref|ZP_01989784.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AQ3810]
 gi|260362495|ref|ZP_05775428.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           K5030]
 gi|260879914|ref|ZP_05892269.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AN-5034]
 gi|260894590|ref|ZP_05903086.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           Peru-466]
 gi|260900464|ref|ZP_05908859.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AQ4037]
 gi|28809576|dbj|BAC62551.1| putative protein-export membrane protein SecF [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149749534|gb|EDM60280.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AQ3810]
 gi|308086452|gb|EFO36147.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           Peru-466]
 gi|308091810|gb|EFO41505.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AN-5034]
 gi|308106951|gb|EFO44491.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           AQ4037]
 gi|308113350|gb|EFO50890.1| protein-export membrane protein SecF [Vibrio parahaemolyticus
           K5030]
          Length = 300

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              + R++   +SI+ ++ ++  L   GLN G+DF GG+   V  ++ +    +   L+ 
Sbjct: 8   NIRKIRYFTTLVSIILTVIALVALGFKGLNLGLDFTGGMVTEVKVDKQLTNHDLLDVLQP 67

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 S      +  +++R           +     V   +  I     + +  IVG +
Sbjct: 68  KLGESTSVTRSGEDGRWVIRYSAPEEGQTLPS-----VADVLKPISHQVDVVSNSIVGAQ 122

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           + ++L  +G + ++I  +++L Y+  RF+W  A G++  L  D+   LGFFA+  +EFNL
Sbjct: 123 VGQDLFEQGGLALLICVLSILGYLCFRFEWRLASGSLFALAHDVILVLGFFAITQMEFNL 182

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T  AAVL ++GYS+ND +++ DR+R+ + +   S    D+ D+++  T  R++ TS    
Sbjct: 183 TVFAAVLAILGYSLNDSIIIADRIRE-LLIAKQSWKTEDINDQAVIATFSRTMVTSGTTL 241

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           I+V  + + GG+ +  F+  M  G++    SSI I   +  ++ 
Sbjct: 242 ITVGALWIMGGAPLAGFSTAMFIGVLSGTWSSISIGTVLPEWLK 285


>gi|254245407|ref|ZP_04938728.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
 gi|124870183|gb|EAY61899.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
          Length = 1059

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 143/520 (27%), Gaps = 40/520 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   G+L       PQ  + ++P   P               +V+    
Sbjct: 10  RPVFAWIVALAIVVAGVLAI-----PQLPIAQYPRLAPP-------------RVVITAAY 51

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG--IGVFSMRQIQNK--ITLSFADSRFKENIADKVTL 117
                  +       +   L      +   +         I ++F+     +     V  
Sbjct: 52  PGASTETVDGDVGSIIEESLDGADGLLYYATSSDGHGNLEIDVTFSPGTDPDIALVDVNN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L     +  +         ++L           + +    + R  + ++  +
Sbjct: 112 RLKQVEPRLPQQVVQQGIGVFKAANTFLMLVTLTSTDGTRDSAQLGDYLNRYVLRELKRA 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP++LR+       +     + N +      G        
Sbjct: 172 PGVGAAELWDAGE-ALRVWLDPNKLREYDLGADDVIAAIGVQNATVTAGAIGDAPFERGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K +++                +    +   +             +       
Sbjct: 231 QLTATIVVKGQLT-------------SPEEFGRIVLKSKQDGSVVRVADVARVEIGRDDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T        A L     P     +          
Sbjct: 278 SFYSRLNGRPAATVGIQLGPRGNALETSNAIRARLAELSRVLPPGVAMEIPFDGAHFVTI 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV  V+++ +   ++ LV    I + ++     +   G ++ + ++
Sbjct: 338 AIREVVLTLVEAVVLVFCVMWLFLRDLRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTM 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +      R    I           V +
Sbjct: 398 FGLVLAIGILVDDAIVVVESVHRVMEEGVSPRDATRRAMKRIGGAIVGVTAVLTAVFVPM 457

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            FF G      R FA+ M  S+L+S F A+S+  A+   +
Sbjct: 458 AFFPGAVGGIYRQFAVAMIASMLVSSFMALSLTPALCANL 497



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 78/194 (40%), Gaps = 7/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
             +  +     +++ ++P          G       IR+ ++ ++ + + +   +W+  +
Sbjct: 303 ETSNAIRARLAELSRVLPPGVAMEIPFDGAHFVTIAIREVVLTLVEAVVLVFCVMWLFLR 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              + L     + + +         FG+  N+  +  ++  IG  V+D +VV + +    
Sbjct: 363 DLRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTMFGLVLAIGILVDDAIVVVESVH--- 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           ++    +S RD   +++    G  V  +       +PMA +    G +   FA+ M   +
Sbjct: 420 RVMEEGVSPRDATRRAMKRIGGAIVGVTAVLTAVFVPMAFFPGAVGGIYRQFAVAMIASM 479

Query: 806 VVAASSSIFIAAPI 819
           +V++  ++ +   +
Sbjct: 480 LVSSFMALSLTPAL 493



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 85/256 (33%), Gaps = 15/256 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS + +   ++    ++  N     +   R         A   +  +      
Sbjct: 796  RTGDMVPLSAIAAPHWTVGPVMLNRYNGYPSLDISGRAATGTSSGAAMAEMERLAGALPV 855

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I         E         L+      V +S +A+ + +   ++ W   L  +T + L
Sbjct: 856  GIGFDWVDAAREEQVAARQTPLL------VGLSVLAVFMALAALYESWTVPLSVLTIVPL 909

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +      G+  ++     ++T++G +  + +++    R    L  + +  R  + 
Sbjct: 910  GMIGAIAAALARGMPNDVYFKVGMITVVGLAAKNAILIVQYARD---LAGSGVPLRQAVI 966

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +        + TSMA  + V+P+ +    G     S       G++ A    +  A   
Sbjct: 967  DAAAARFRPIMMTSMAFLLGVVPLVLATGAGAESRRSIGTGAFGGVLAATMFGLVFAPVA 1026

Query: 820  --LLFIYDWRAKNARI 833
              ++     R ++A +
Sbjct: 1027 FRVVVSAGRRGRHAAV 1042


>gi|16330661|ref|NP_441389.1| cation or drug efflux system protein [Synechocystis sp. PCC 6803]
 gi|1653153|dbj|BAA18069.1| cation or drug efflux system protein [Synechocystis sp. PCC 6803]
          Length = 1061

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/538 (13%), Positives = 150/538 (27%), Gaps = 32/538 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +G +           + +FP   P                     
Sbjct: 8   KRPVFSSVCAIIILLVGTISIF-----SLPIAQFPEVAPTTIQ---------VSSNYSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++       +      + IT++F  S+ K+  A  V   + 
Sbjct: 54  NAEVVERAVTDILERQINGVQGMRYISSTSSNDGTSSITVTFDRSQNKDIAAVDVQNRVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L    ++  +    E    ++             +  S    R  +D I   E  
Sbjct: 114 LAEPQLPEAVRRTGIRVNKESNALLLGIGITSPDGEYDNVFLSNYADRYLVDPIRRLEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                    L  +    DP +L     T A +S      N        G          Q
Sbjct: 174 GDVRIFGERLYAMRLWVDPMKLAAQQLTMADLSRALQEQNLQVGAGQIGAEPAPPGQEYQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    ++              +       I                 +          
Sbjct: 234 LDLLASSQL-------------VEVKDFEDLIVKSGASGSVVRFKDIGRVELGAQNYNSF 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +            A L           V          S S
Sbjct: 281 LRFRGDEAVGLGIYQLLDSNALEVARLVKDEMARLAQNFPEGIEYSVAFDTTEFVQESLS 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV++V+ + +   +  L+   +I L +I T A + +   ++   ++ G+
Sbjct: 341 EVVETLLIAVVLVILVILVFLQDWRSALIPALTIPLALIGTFAFVKVFNFSINSLTLFGL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            L  GL VD  I+V E+I    +         + +       + I  S +   +   V F
Sbjct: 401 TLATGLVVDDAIIVVEQISRFIKVKHEDPQEAAQEAMGELTGAVIATSLVLMAVFIPVAF 460

Query: 479 FFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F G      + FA+T+  SIL+S F A+++  ++   ++R  +     I     +F  
Sbjct: 461 FPGTTGALYQQFALTIAFSILLSTFLALTLTPSLCALLLREGQEPPAFIAGFFNWFNR 518



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 63/147 (42%), Gaps = 6/147 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  AL    T+ L +  T  F  +F    N   +  +    G  V+D ++V +++  + 
Sbjct: 363 DWRSALIPALTIPLALIGTFAFVKVFNFSINSLTLFGLTLATGLVVDDAIIVVEQI--SR 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +       ++   +++ E  G  + TS+      +P+A + G+       FA+ +AF I
Sbjct: 421 FIKVKHEDPQEAAQEAMGELTGAVIATSLVLMAVFIPVAFFPGTTGALYQQFALTIAFSI 480

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNA 831
           +++   ++ +   +  L + + +   A
Sbjct: 481 LLSTFLALTLTPSLCALLLREGQEPPA 507



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  + ++ L I   L   +L G   ++     ++ LIG S  + +++ +      +L  
Sbjct: 897  PVIILLSVPLAILGALTAQSLRGFPNDVYCQIGLVMLIGLSSKNAILIVEFAN---QLRA 953

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                      ++  + L   + T+++    + P+A+    G     +    +  G++VA 
Sbjct: 954  EGYPIAKAALEASKDRLRPILMTALSTLFGIFPLAIATGAGAGSRQALGTAVFGGMLVAT 1013

Query: 810  SSSIFIAAPILLFIYDWRAK 829
              S+F+   + + +     +
Sbjct: 1014 FLSLFVVPVLYIVVKTISGR 1033


>gi|294811581|ref|ZP_06770224.1| Protein-export membrane protein secD [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324180|gb|EFG05823.1| Protein-export membrane protein secD [Streptomyces clavuligerus
           ATCC 27064]
          Length = 611

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 107/560 (19%), Positives = 201/560 (35%), Gaps = 61/560 (10%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD- 64
            ++IL +++   G + A                       LG+DL GG+ + L+   +  
Sbjct: 32  LVLILIALVALTGGMFA----------------TGDTTPRLGIDLAGGTTITLKAKAEPG 75

Query: 65  ----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
                    +      L   +   G+    ++    + I ++       E    +V    
Sbjct: 76  KESAVNETNMNTAVGILERRVNGLGVSEAEVQTQGRSHIIVNIPKGTDSEQARRQVGTTA 135

Query: 120 QGVNSKLNVDPKKNLLVTT---------------------TEKEISIVLSQNNIDQVISH 158
           Q     +        +                           + S   S     Q    
Sbjct: 136 QLYFRPVLQVAAGAPVPQQPTPGASESGKPAEGKDAKDAKDGDKASPSASTGTSAQPGGS 195

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
             +        +    G SE      G+          + P           + +F  + 
Sbjct: 196 TPQGRAVTDALKDPSPGASEPGKPAEGAKDGKDGKDAAKTPDPAPTGDVAALQTAFATLN 255

Query: 219 PNNSKKGFMFGVRFLRDSD----------GNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
             + K           ++             +  +    E+ G  ++ A   FD      
Sbjct: 256 CEDQKARAAVTESARPENPMVSCGKNSAGQWEKYLLGPAEVDGKDVDDAKGQFDQNRGIW 315

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSG----KAQISGNFT 324
           +V + F + G+++F ++T     +         VL   V++    +      A+ISG+F 
Sbjct: 316 IVTMDFTDKGSKKFQKITSKLSQQQSPANQFAIVLDGEVVSAPQVNQTLTANAEISGSFN 375

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            ++A  L  ML  G+LP+         V A LG + +  G  A   GL L++++++  Y 
Sbjct: 376 QKSAQELGNMLSYGALPLTFQEESVTTVSAALGGEQLRAGLIAGAIGLALVIIYLVAYYR 435

Query: 385 KWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
               +A  S+ ++  LT  L+SLLG      L LP++ G ++ IG+  DS I+  ERIR+
Sbjct: 436 GLAAIAILSLLVSAALTYVLMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERIRD 495

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E R+ +++  +++  + RA  TI  S+  + +A  VLF    G V+GFA T+GL+ L+ +
Sbjct: 496 EVREGRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDV 555

Query: 501 FTAISIVRAMMIFIIRYKKM 520
                  + +M    R K  
Sbjct: 556 VVVFFFTKPLMTLAARSKFF 575



 Score =  113 bits (281), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 88/261 (33%), Gaps = 10/261 (3%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              +      KG  +   + ++        +      + D    +       L       
Sbjct: 314 IWIVTMDFTDKGSKKFQKITSKLSQQQSPANQF--AIVLDGEVVSAPQVNQTLTANAEIS 371

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
           G    ++            +      ++   V   +  E +R G++   I    ++IY+ 
Sbjct: 372 GSFNQKSAQELGNMLSYGALPLTFQEESVTTVSAALGGEQLRAGLIAGAIGLALVIIYLV 431

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVY 741
             ++   A+ AI +L++    T    +L G       NL AV   +  IG + +  +V +
Sbjct: 432 AYYRGLAAI-AILSLLVSAALTYVLMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVYF 490

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      + R  ++++        + +   +F++   + +     +  FA  +
Sbjct: 491 ERIRDEVRE---GRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTL 547

Query: 802 AFGIVVAASSSIFIAAPILLF 822
               ++      F   P++  
Sbjct: 548 GLTTLLDVVVVFFFTKPLMTL 568


>gi|282864185|ref|ZP_06273241.1| protein-export membrane protein SecD [Streptomyces sp. ACTE]
 gi|282560672|gb|EFB66218.1| protein-export membrane protein SecD [Streptomyces sp. ACTE]
          Length = 583

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 107/568 (18%), Positives = 213/568 (37%), Gaps = 44/568 (7%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD---- 61
             +IL +M+   G +    +  P+                LG+DL GG+ + L+      
Sbjct: 21  LALILIAMVALTGGMFLSGHTTPR----------------LGIDLAGGTSITLQAKNQPG 64

Query: 62  -EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFL 119
             +      +      +   +   G+    ++   ++ I ++       +   ++V    
Sbjct: 65  KPNAINKTNMDTAVSIIERRVNGLGVSEAEVQTQGDRNIIVNIPKGTNSKQAQEQVGTTA 124

Query: 120 QGVNSKL---------NVDPKKNLLVTTTEKEISIVL--SQNNIDQVISHAIEQSMEIIR 168
           Q     +             +      + +   +     S +            S     
Sbjct: 125 QLYFRPVLTVADGAPTPAGSESPSATGSDKPTATPSAEKSADETASGSETTPSPSSTTQG 184

Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL---GTTAKMSFHKVLPNNSKKG 225
           + +     +++T     S          + P      L    T    S            
Sbjct: 185 RAVTGALKADATPTPGASDEAADTPAATETPDAATAALEKKFTELDCSDAAARATAGDGV 244

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                     S+G+   +    E+SG  ++ A A FD +    +V + F   G+++F  +
Sbjct: 245 KPEDPTVACSSEGDAKYLLGPSEVSGTDVDDAKAQFDQQRGIWLVSMEFTSKGSKKFQAI 304

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSG----KAQISGNFTIETAGILAAMLRAGSLP 341
           T+    +          L   V++    +      A+ISG+F  ++A  LA +L  G+LP
Sbjct: 305 TKKLSAQQSPQNQFAISLDGEVVSAPQVNETLSGSAEISGSFNQQSAEDLANVLSYGALP 364

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           +         V A LG D +  G  A   GL L+V++++  Y    L+A  S+  + +L+
Sbjct: 365 LSFQEQSVTTVSAALGGDQLKAGLIAGAIGLALVVIYLVAYYRGLALIALLSLAASGVLS 424

Query: 402 LALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
             +++LLG      L LP++ G ++ IG+  DS I+  ER+R+E R+ +++  +++ G+ 
Sbjct: 425 YTIMALLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIREGRTLRPAIERGWP 484

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           RA  TI  S+  + +A  VLF    G V+GFA T+GL+ L+ +       + ++  +   
Sbjct: 485 RARRTILVSDFVSFLAAAVLFLVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPVLTMMGGT 544

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           K   S           +     ++  R 
Sbjct: 545 KFFSSGHPWSGLDPKRLGAKPPLRRSRR 572



 Score = 93.2 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 87/266 (32%), Gaps = 10/266 (3%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              ++     KG  +   +  +       ++       G++       E           
Sbjct: 286 IWLVSMEFTSKGSKKFQAITKKLSAQQSPQNQFAISLDGEVVSAPQVNETLSGSAEISGS 345

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
            +  +   +  ++      +      Q+   V   +  + ++ G++   I    ++IY+ 
Sbjct: 346 FNQQSAEDLANVLSYGALPL--SFQEQSVTTVSAALGGDQLKAGLIAGAIGLALVVIYLV 403

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVY 741
             ++    +  ++     +  +    AL G       NL AV   +  IG + +  +V +
Sbjct: 404 AYYRGLALIALLSLAASGVL-SYTIMALLGPAIGFALNLPAVCGAIVAIGITADSFIVYF 462

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      + R  I++         + +   +F++   + +     +  FA  +
Sbjct: 463 ERVRDEIRE---GRTLRPAIERGWPRARRTILVSDFVSFLAAAVLFLVTVGKVQGFAFTL 519

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWR 827
               ++          P+L  +   +
Sbjct: 520 GLTTLLDVVVVFLFTKPVLTMMGGTK 545


>gi|116692839|ref|YP_838372.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia HI2424]
 gi|170737895|ref|YP_001779155.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia MC0-3]
 gi|116650839|gb|ABK11479.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia HI2424]
 gi|169820083|gb|ACA94665.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia MC0-3]
          Length = 1057

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/585 (11%), Positives = 160/585 (27%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  +I  +GL+       P      +P  +P + +                  
Sbjct: 10  RPIFAVVLSIVIFALGLISI-----PMLPAGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             + ++ ++F      +  A +V   +  
Sbjct: 56  PKEIAESVAEPLEEAINGVEGIMYMKSVAGSDGSLQVVVTFLQGVDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            ++     +     D++       
Sbjct: 116 ALSRLPDEVRQYGVTTQKQSPTPLMYVSLYSPDNSRDSLYLRNYLTLHVKDELSRLTGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL     T + +       N        G       +    
Sbjct: 176 DVGVYGSGDYAMRLWLDPNRLASRGLTASDVIAAVREQNVQVSAGQLGAEPSPKKNDFLV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +  +    +         I           
Sbjct: 236 SINVRGRL-------------RTVQEFSDIVLRNGDDGQVVKLSDVARIELGAGDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L     P                S   
Sbjct: 283 YFNDRHSAVVGIFLSPGANALDVAKAVYAKLDELSKRFPPGVAYRPVWDPTVFVRESIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G+V
Sbjct: 343 VQHTLIEAVVLVVLVVILFLQTWRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAQGLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS   ++++  A+   ++R        +       F  +  
Sbjct: 463 GVTGQFYKQFAVTIAISTVISAINSLTLSPALAAKLLRPHGAPKDALTRALDRAFGWLFH 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R+     G+          +   +             +
Sbjct: 523 PFNRFFERSSDRYHGVVGRTLKRRGVVFAVYAALLAATALLFNAV 567



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  +  L G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S RD   +++ E  G  V  ++      +PMA   G        FA+ +A   V
Sbjct: 425 Q---GLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMSGVTGQFYKQFAVTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAINSLTLSPALAAKLLR 500



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 76/208 (36%), Gaps = 10/208 (4%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII---SAIAML 681
             GD+  +         K+ +I          +    +S + + +    +++   + + + 
Sbjct: 832  IGDADPKAMSSSQAIAKLQQIAKDVLPPGITLEWTDLSYQQVTQSNAAIVVFPLAVMLVF 891

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +   ++ W   L  I  + + +   L    L G + N+     ++ L+G +  + +++
Sbjct: 892  LVLASLYESWTLPLAVILIVPVCMCAALFGVWLSGGDNNVFVQVGLVVLMGLACKNAILI 951

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +  R+   L        +   ++    L   V TS+A     +P+ +    G  V  + 
Sbjct: 952  VEFARE---LEIQGKGVVEAALEACKLRLRPIVMTSVAFIAGSVPLLIGSGAGSEVRAAT 1008

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + +  G++      +F+     + I  
Sbjct: 1009 GVTVFAGMLGVTLFGLFLTPVFYVAIRK 1036


>gi|194291133|ref|YP_002007040.1| aminoglycoside/multidrug efflux pump (rnd family) [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224968|emb|CAQ70979.1| aminoglycoside/multidrug efflux pump (RND family) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 1046

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/611 (13%), Positives = 161/611 (26%), Gaps = 38/611 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   +  +L  +    GLL      L +  + ++P+  P   I          +     
Sbjct: 6   LKRPAFAWVLAILTVVAGLLA-----LNRIPIAQYPAVAPPTVI---------IYADYPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    ++    +        S       +TL F      +     V   + 
Sbjct: 52  ASARTVEDRVTAVLEQQMHGIPGLLYLDSSSEGGTATVTLGFRQGTDPQLAQVNVRNRVA 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L    ++  +        + +      D                 +  +      
Sbjct: 112 QAEPLLPEAVRRGGVYVDQASSSAFMYVSLVSDSGQLDETALGDFAAGSVLPLLRRLPGI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          L    DP +L     TTA++       N +      G          Q
Sbjct: 172 GKAEPYGA-EYALRIWFDPDKLNAFNLTTAEVEAAIRARNGNVTPGQLGGAPAVPGQPFQ 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +V     +S                     +                 +    +    G
Sbjct: 231 AIVRPPAPMSDAQ-------------AFGRIVVRAATDGSAVLLRDVARVELAASDYRYG 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T  T          G        +          S S
Sbjct: 278 STLNTRNAASIGLKLADGANVLQTSRTVRAALDAASKGFPGDVRYEISYDGATFVQASIS 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV ++L++ +   +  L+    + ++++ T+A L  LG +L + ++ G+
Sbjct: 338 RVVLTLIEATVLVFLILYLFLGNLRATLIPCIVVPVSLLGTVACLYALGLSLNVITLFGV 397

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E +             +           +    +      V + F
Sbjct: 398 VLAIGILVDDAIVVVENVERIMRTDGVGAMEAAARSMREVSGALVAVTLVLCAVFVPMAF 457

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSR 530
           FG   G   R FA+T+ +SI  S+F A+++  AM   +           +   D    + 
Sbjct: 458 FGSAVGVIYRHFAVTLAVSIAFSLFFALTLAPAMCASLLRHSAAPARGPLAWFDARFAAF 517

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  +     R   W      L   C   L          +  G I + V       
Sbjct: 518 TARYAGWVQALQRRRLRWLAVYLALTLACGYALWKMPSGFLPEEDTGEIVVDVELPAGST 577

Query: 591 LSVVRSNLESL 601
            +  R  + SL
Sbjct: 578 QADTRRLVASL 588



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 91/286 (31%), Gaps = 9/286 (3%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                               D +   ++ V A       ++R                  
Sbjct: 221 APAVPGQPFQAIVRPPAPMSDAQAFGRIVVRAATDGSAVLLRDVARVELAASDYRYGSTL 280

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV---PLSTIQNTEIVGPKISRELIRKGI 670
                  +  +  D     +    V+  +       P          G    +  I + +
Sbjct: 281 NTRNAASIGLKLADGANVLQTSRTVRAALDAASKGFPGDVRYEISYDGATFVQASISRVV 340

Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           + +I + + + + +++        L     + + +  T+      G+  N+  +  V+  
Sbjct: 341 LTLIEATVLVFLILYLFLGNLRATLIPCIVVPVSLLGTVACLYALGLSLNVITLFGVVLA 400

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + +     + T  +   +   +S+ E  G  V  ++      +PMA +
Sbjct: 401 IGILVDDAIVVVENV--ERIMRTDGVGAMEAAARSMREVSGALVAVTLVLCAVFVPMAFF 458

Query: 790 G---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G   G +   FA+ +A  I  +   ++ +A  +   +    A  AR
Sbjct: 459 GSAVGVIYRHFAVTLAVSIAFSLFFALTLAPAMCASLLRHSAAPAR 504



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 86/261 (32%), Gaps = 13/261 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++ V   +   +S+          G+++ + FDG  +  +  +  PG +    
Sbjct: 775  MHPDQLARVHVRNAQGAMVSLAAFASLEWGQGEVTLERFDGFSSVRINAEVAPGYTTGAA 834

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI-YIWIRFKWY 691
                    +                  +       +      +S + + +  + +   W 
Sbjct: 835  MTRLAELVRELGPEFDVRWTGRAYEQEQTG----TQAPWLFALSLLFIFLCLVALYESWT 890

Query: 692  FALGAITTLILDITKTLGFFALFG-IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L A+  ++               +  ++     V+ ++G +  + +++ +   + ++ 
Sbjct: 891  LPL-AVIAIVPTGLMGAAAAIWLRAMPNDVYFKVGVVVIMGLAAKNAILIVE-YAEQLRR 948

Query: 751  YTTS-ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                 +   +   ++  + L   V TS+A  + V+P+A+    G     +    +  G++
Sbjct: 949  GAAGAMDVVEAATRAARQRLRPVVMTSLAFVLGVVPLAISTGPGAGAQQAVGTGVLGGML 1008

Query: 807  VAASSSIFIAAPILLFIYDWR 827
             A      +A P+L      R
Sbjct: 1009 GATVLGT-LAVPLLYAAIARR 1028


>gi|213609626|ref|ZP_03369452.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|289809967|ref|ZP_06540596.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 440

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/465 (10%), Positives = 116/465 (24%), Gaps = 38/465 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYS 461
             +VL IGL VD  I+V E +      +  +   +      +   
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQG 440



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 63/180 (35%), Gaps = 3/180 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437


>gi|183600421|ref|ZP_02961914.1| hypothetical protein PROSTU_03992 [Providencia stuartii ATCC 25827]
 gi|188020217|gb|EDU58257.1| hypothetical protein PROSTU_03992 [Providencia stuartii ATCC 25827]
          Length = 1046

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/566 (12%), Positives = 161/566 (28%), Gaps = 36/566 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +   + ++L   I   G+L        +  L  +PS  P               ++    
Sbjct: 9   QRPIFAMVLSIFILIAGILS-----FYKLPLSEYPSVTPPT-----------VQVIASYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLF 118
                 +   +    ++  + ++        M      + T+SF      +    +V   
Sbjct: 53  GATPKVIADTVASPIEQAVNGVEGMLYMSSQMSTDGKMVLTISFRQDVDPDIAQIQVQNL 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  V  +L  + ++  + T       +++        +   +  S   +    D+I    
Sbjct: 113 VSRVIPRLPQEVQQIGVTTEKTSPDVLMVVHMYSPNNVYDPLFVSNYALLNVRDEIARLP 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                L        +    DP+++  L  T   +       N        G +    S  
Sbjct: 173 GVASALVWGEGEYAMRAWIDPTKVASLGLTANDIVTAIREQNIQVATGSIGQQPNSTSS- 231

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            Q  V     ++                +    I       +  +      +        
Sbjct: 232 FQISVNALGRLTTEE-------------QFGNIIIQTGEDGQSTYLKDVARLELGADNYS 278

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              +L                +     E+     A L+A  +      +          S
Sbjct: 279 LRSLLNGQNAVGLQIVMSPGANALEVAESVRETMARLQANFIEGIDYKIAYDPTIFVSAS 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV+IV+ + +   +  ++   ++ ++++ T A + L G +L   S+ 
Sbjct: 339 LKSVAITLLEATILVVIVVVLFLQSWRASIIPLVAVPVSLVGTFAFMYLFGFSLNTLSLF 398

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV-- 476
           G+V+ IG+ VD  I+V E +     +  +   +           I           +   
Sbjct: 399 GLVISIGIVVDDAIVVVENVERHITEGLTPKEAAFKAMEEVTGPIIAITSVLAAVFIPTA 458

Query: 477 -LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            L    G   R F++T+ +S +IS   ++++  A+   +++     S           I 
Sbjct: 459 FLSGLQGEFYRQFSLTIVISTIISAINSLTLSPALSAILLKPHDKNSKPDWLTRIINAIF 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSI 561
                +F           +      I
Sbjct: 519 SRFFAKFNLFFNALSNKYVQIVRRCI 544



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 91/244 (37%), Gaps = 6/244 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L +      S  N        + +            V E + +     +     
Sbjct: 266 DVARLELGADNYSLRSLLNGQNAVGLQIVMSPGANALEVAESVRETMARLQANFIEGIDY 325

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +        +S  L    I  +  + + +++ +     W  ++  +  + + +  T  F 
Sbjct: 326 KIAYDPTIFVSASLKSVAITLLEATILVVIVVVLFLQSWRASIIPLVAVPVSLVGTFAFM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   N  ++  ++  IG  V+D +VV + +    +  T  ++ ++   K++ E  G 
Sbjct: 386 YLFGFSLNTLSLFGLVISIGIVVDDAIVVVENV---ERHITEGLTPKEAAFKAMEEVTGP 442

Query: 772 SV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  TS   A FI    ++   G     F++ +    +++A +S+ ++  +   +     
Sbjct: 443 IIAITSVLAAVFIPTAFLSGLQGEFYRQFSLTIVISTIISAINSLTLSPALSAILLKPHD 502

Query: 829 KNAR 832
           KN++
Sbjct: 503 KNSK 506



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 68/238 (28%), Gaps = 9/238 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      D            +         S   T  +E + ++           +   
Sbjct: 814  TITRTNGPDRVIHYNGYPSVDITGNAAPGFTSGQATDAMEKILRETLPEGMSFEWTDLTY 873

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                     +    + V+ +    LI       W      +    + +   +    L   
Sbjct: 874  QEQLAGNSALYIFPLAVLFAF---LILAAQYNSWSLPFSVLLIAPMALLSAIAGVWLLNG 930

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + N+    A + L+G +  + +++ +     +            + ++ +  L   + TS
Sbjct: 931  DNNIFTQIAFIVLVGLAAKNAILIVEFA---IAQEKQGKDPLAAVSEAAHLRLRPILMTS 987

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             A    V+P+ +    G  +  +  + + FG++      + +     + I     K +
Sbjct: 988  FAFIAGVIPLVLATGAGSEMRQAVGVAVFFGMLGVTLFGLLLTPVFYMMIRKLAGKKS 1045


>gi|153832929|ref|ZP_01985596.1| protein-export membrane protein SecF [Vibrio harveyi HY01]
 gi|148870852|gb|EDL69751.1| protein-export membrane protein SecF [Vibrio harveyi HY01]
          Length = 300

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 145/284 (51%), Gaps = 6/284 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              + R++   +S++ +I ++  L   GLN G+DF GG+   V  ++ +    + + L+ 
Sbjct: 8   NIRKIRYFTTAVSVVLTIIALVALGMKGLNLGLDFTGGMVTEVKVDKQLTNHDLLNALQP 67

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 S      +  +++R         A+ + L  V   +  I     + +  IVG +
Sbjct: 68  KLGESTSVTRSGEDGRWVIRYSAP-----AEGQTLPSVADVLKPISHQVDVVSNSIVGAQ 122

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           + ++L  +G + ++IS + +L Y+  RF+W  A G++  L  D+   LGFFA+  +EFNL
Sbjct: 123 VGQDLFDQGGLALLISVLTILGYLCFRFEWRLASGSLFALAHDVILVLGFFAITQMEFNL 182

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T  AA+L ++GYS+ND +++ DR+R+ + +   +     + D+++  T  R++ TS    
Sbjct: 183 TVFAAILAILGYSLNDSIIIADRIRE-LLVAKQNWKTEQINDEAVLATFSRTMVTSGTTL 241

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           I+V  + + GGS +  F+  M  G++    SSI I   +  ++ 
Sbjct: 242 ITVGALWIMGGSALAGFSTAMFIGVLSGTWSSISIGTVLPEWLK 285


>gi|121605777|ref|YP_983106.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120594746|gb|ABM38185.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Polaromonas naphthalenivorans CJ2]
          Length = 1057

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/703 (12%), Positives = 187/703 (26%), Gaps = 54/703 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G +        Q  + ++P   P               +V+    
Sbjct: 8   RPIFAWVIALFILVMGSVAI-----TQLPISQYPPVAPP-------------SIVVTASY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKE-GIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +    G+              +TL+F      +     V  
Sbjct: 50  PGASARTLEDSVLSVIEREMNGSPGLIYMESVAQANGSGTLTLTFETGTNPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L   + +L     +  +     +   ++ +  + D      I       R  I ++   
Sbjct: 110 RLSRASPRLPQAVTQQGVRVDKSRSNFLLFTMLSSDNPAIDPIALGDYASRNVIPELQRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L     ++  ++      N        G        
Sbjct: 170 PGIGQAQLFGT-ERAMRIWIDPAKLTGFALSSLDVTRAIAAQNAQIASGTIGDLPNVAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G    V    ++S +              +    +                 I       
Sbjct: 229 GIAATVVVNGQLSSVE-------------QFGNIVLRAATDGSTVRLKDVARIELGAQTY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +        L+          +   +      
Sbjct: 276 ATSARLNGKPATGIGLQLAPSGNALGAAKAVRAKMEQLKPYFPQGVSYSIPYDSSRFVSI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ ++    + + ++ T A L  LG ++ + ++
Sbjct: 336 SIKQVAETLVEAVVLVFLVMFLFLQNWRYTVIPTIVVPIALLGTFATLLALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  +   +      +    I    +  +   V 
Sbjct: 396 FGMVLVIGIVVDDAIVVVENVERIMSEEGLAPLEATRKAMGQISGAIIGVTVVLISVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L FF    G   R F+  M  SI  S F A+S+  A+   +             L     
Sbjct: 456 LAFFAGSVGNIYRQFSAVMVASIGFSAFLALSLTPALCATL-------------LKPVEA 502

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   F      G   +       +  L      Y + +   I +  L    +  S 
Sbjct: 503 GHHHEKTGFFGWFNRGFSRTAKGYEGLVARLLKRAGRYLVIYAAIIGVVALVYTRLPTSF 562

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + +  +   + ++        +     ++   G  + Q  V  MV               
Sbjct: 563 LPAEDQGNLLVNVQLPPGATVERTRAVMEQVEGFMLKQPEVQSMVGVLGFSFSGQGQNAG 622

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
              V  K   E   KG     ++  A   +  IR  + F L  
Sbjct: 623 LAFVTLKDWDERKEKGQQADALAGRAFGAFSGIRDAFVFPLSP 665



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 87/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q    S +        +       G+++   + +    +++    
Sbjct: 258 STVRLKDVARIELGAQTYATSARLNGKPATGIGLQLAPSGNALGAAKAVRAKMEQLKPYF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +      +     I++    ++ + + + + +++  + W + +     + + + 
Sbjct: 318 PQGVSYSIPYDSSRFVSISIKQVAETLVEAVVLVFLVMFLFLQNWRYTVIPTIVVPIALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++ +IG  V+D +VV + +     +    ++  +   K++
Sbjct: 378 GTFATLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENV--ERIMSEEGLAPLEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  ++      +P+A + GSV      F+  M   I  +A  ++ +   +   
Sbjct: 436 GQISGAIIGVTVVLISVFVPLAFFAGSVGNIYRQFSAVMVASIGFSAFLALSLTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 65/208 (31%), Gaps = 11/208 (5%)

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            +    ++G     +     PG S                               +     
Sbjct: 810  MQTVRYNGYSAMRISGSAAPGYSTGAAMAEMEKLAAQLPQGFGYEWTGQSREEKQAGS-- 867

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              + ++    + +A+ + +   ++ W   L  I  + L +   L    L     ++    
Sbjct: 868  --QAMILYGFAILAVFLCLAALYESWSIPLAVILVVPLGVVGVLLATLLRSYANDVYFQV 925

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++T+IG S  + +++ +  +    L        +    + +      + TS A  + VL
Sbjct: 926  GLITIIGLSAKNAILIIEFAKD---LQAQGKGVIESALTAAHLRFRPIIMTSFAFMLGVL 982

Query: 785  PMAVWGGSVI---GSFAIPMAFGIVVAA 809
            P+A+  G+      +    +  G++   
Sbjct: 983  PLAIATGASSASQRAIGTGVIGGMITGT 1010


>gi|328953229|ref|YP_004370563.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328453553|gb|AEB09382.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 1060

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/521 (10%), Positives = 142/521 (27%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L           + ++P   P               + ++   
Sbjct: 9   RPVFAWVIAIIMMLAGGLAI-----YNMPISQYPPIAPP-------------SIAIDAFY 50

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S      +I L+FA     +     V  
Sbjct: 51  PGASAETVENSVVQIIEQKMTGFDKLLYMSGTSDASGAGRIELTFAPGADPDLAWAMVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L    +++ +  +   +  +++     +       + +          +   
Sbjct: 111 KLQLAMASLPDTVQRSGVKVSKSTKNWLIIVGLTSEDGSMDEFDLADYAQANIEQVLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P +L     T   +       N       FG     +  
Sbjct: 171 PGVGEVETFTSQ-YAMRVWVNPDKLNDYQLTMEDVIKGLQAYNVEVSAGQFGGIPAVEGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                              
Sbjct: 230 RLNASIIVQNLL-------------KTPEEFAAIPLRINPDGSIVRVRDVGRTELGTERY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +              A  +   T +      A L     P    +           
Sbjct: 277 GSKVLYNGQPGAALAIRQAAGANALKTADGVKAKMAELAKYFPPGMKAMYPYDTTPFVRV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +    T      LV +V+++ +   +  L+   ++ + ++ T A+L L G ++ + ++
Sbjct: 337 AINEVVWTLFEAILLVFLVMYVFLGNLRATLIPTLAVPVVILGTFAILGLFGFSINMLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +      +         S +    +        
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERVMSEEGLPPKEATRKSMGEITSALIGIGLVLAAVFGP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + FFGG      R F+IT+  ++L+S+  A+ +   +   +
Sbjct: 457 MAFFGGSTGVIYRQFSITVIAAMLLSVVVALILTPVLCASL 497



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 82/238 (34%), Gaps = 7/238 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       +               L   Q    +++     ++    ++ +  
Sbjct: 259 SIVRVRDVGRTELGTERYGSKVLYNGQPGAALAIRQAAGANALKTADGVKAKMAELAKYF 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               R  I + +  +  + + + + +++        L     + + I 
Sbjct: 319 PPGMKAMYPYDTTPFVRVAINEVVWTLFEAILLVFLVMYVFLGNLRATLIPTLAVPVVIL 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     LFG   N+  + A++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 379 GTFAILGLFGFSINMLTMFAMVLAIGLLVDDAIVVVENV--ERVMSEEGLPPKEATRKSM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
            E     +   +       PMA +GGS       F+I +   ++++   ++ I  P+L
Sbjct: 437 GEITSALIGIGLVLAAVFGPMAFFGGSTGVIYRQFSITVIAAMLLSVVVAL-ILTPVL 493



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 72/202 (35%), Gaps = 10/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            E ++     +  L      +  G      +  K   G++ +   ++I++    +   W  
Sbjct: 844  EAMQAMEEIVAKLPKGVGYDWTGISYQERMA-KAQTGLLYTFSIIVIFLCLAALYESWTI 902

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  L L +   +   +L G+  ++     +LT++G +  + +++   ++  M    
Sbjct: 903  PITILLALPLGVVGGVVASSLRGLPNDVYFQIGLLTVLGLTTKNAILI---VQFAMAKIE 959

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAA 809
              +   +   +     L   V TS+A    VLP+      G     +    +  G++ A 
Sbjct: 960  EGMGLVEATLEGSKLRLRPIVMTSLAFGFGVLPLALATGAGAGAQMAIGTGVLGGMITAT 1019

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
              +IF      + +     K  
Sbjct: 1020 FLAIFFIPLFFVGVVQLFGKKK 1041


>gi|209519777|ref|ZP_03268563.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. H160]
 gi|209499787|gb|EDZ99856.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. H160]
          Length = 1061

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 66/548 (12%), Positives = 155/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++        +  +  +P  +P + +          H       
Sbjct: 10  RPIFAGVLSVLILLGGIISLF-----KLPISEYPEVVPPSVV---------VHAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAEAVAAPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTNPDLATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGVTTIKSSPTLTMVVHLISPNDRYDMTYLRNYALLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N      + G          Q 
Sbjct: 176 EVHLWGSGDYAMRVWLDPQKVAQRGLTATEVVNAIREQNIQVAAGVIGASPSVPGTQLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      +    +      
Sbjct: 236 SVNARGRL-------------KTEGEFGDIIVKTTPDGGVTYLRDIARVELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +        L           +          S   
Sbjct: 283 LLDNKPAVALAINQAPGANSLAISDQVRAAMKELAEDMPAGVEYRIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIASGLSARDATYKAMREVSGPIIAIALTLVAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   ++R    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAMLLRSHGEKEDWLTRVMNLVLGGFFR 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 RFNKVFHR 530



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSVLSALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S      ++    L   + TS+A  + V+P+ +    G  +  +  I + FG+
Sbjct: 960  -LEHDGRSPLQAAIEASRMRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 102/282 (36%), Gaps = 7/282 (2%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            G   S+  +   + +     L    +F   I           L  +     +     + 
Sbjct: 222 IGASPSVPGTQLQLSVNARGRLKTEGEFGDIIVKTTPDGGVTYLRDIARVELAASEYGLR 281

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
               +     L   Q    +S+A +  +    K++ E +P            +  R  I 
Sbjct: 282 SLLDNKPAVALAINQAPGANSLAISDQVRAAMKELAEDMPAGVEYRIVYDPTQFVRASIE 341

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             I  ++ +   ++I + +  + W  ++  +  + + I  T      FG   N  ++  +
Sbjct: 342 AVIHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGM 401

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVL 784
           +  IG  V+D +VV + + +N+    + +S RD   K++ E  G  +  ++   A    L
Sbjct: 402 VLAIGIVVDDAIVVVENVERNIA---SGLSARDATYKAMREVSGPIIAIALTLVAVFVPL 458

Query: 785 PMAV-WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  G     FA+ +A   V++A +S+ ++  +   +  
Sbjct: 459 AFMTGLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAMLLR 500


>gi|120600849|ref|YP_965423.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. W3-18-1]
 gi|120560942|gb|ABM26869.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. W3-18-1]
          Length = 1043

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/573 (12%), Positives = 158/573 (27%), Gaps = 41/573 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  IG++       P+  + R+PS  P               + +    
Sbjct: 8   RPVFAWVIALFIVLIGVIAI-----PKLPISRYPSVAP-------------VSVSIYAAY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L      L       +K       S+    + +IT +F      E     V  
Sbjct: 50  PGATPQTLNDSVVSLVERELSGVKNLLYFESSVDSSGSAQITATFKPGTDAEMAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V  +L    ++  L   +     +++            I  +  + R  ++++   
Sbjct: 110 RIKAVEPRLPQVVRQIGLQVESAASSFLMMIGMTSPNGQFDEIALNDYLARNIVEELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L     T   ++      N        G   +    
Sbjct: 170 DGVGRVQLFGA-EQAMRVWVDPNKLTAYSLTMNDLAIAIEQQNAQIAPGRLGDEPVLQGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++S                +    +        +        +       
Sbjct: 229 RLTVPLTVQGQLS-------------TPEEFAAIVLRAGADGAKLVLADVAWVELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                        A        +   T        A L           V          
Sbjct: 276 GFSNRENGVAATSAAIQLSPGANAVRTASAVRERLAELAPMMPAGMNYSVPFDTAPFVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+      + ++ T A++ L G ++   ++
Sbjct: 336 SIEKVIYTLFEAMALVFMVMFLFLQNLRYTLIPAIVAPIALLGTFAVMLLAGFSINSLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERLMATQGLSPREATSQAMKEITGAVIGITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      + F ++M +SIL S F A+++  A+   ++R               F 
Sbjct: 456 MAFGSGSVGVIYQQFTLSMAVSILFSAFLALTLTPALCATLLRPVSADHHQKGGFFGTFN 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
                       R   +       + +  +L  
Sbjct: 516 RGFEHLTAGYSERVARLVGRSGRMMAAFAVLCM 548



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 75/204 (36%), Gaps = 12/204 (5%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-W 685
            + A    L  +   +   +  S   +T         ++I      + +  + M +++  
Sbjct: 302 TASAVRERLAELAPMMPAGMNYSVPFDTAPFVKVSIEKVIYTLFEAMALVFMVMFLFLQN 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +R+    A+ A   L      T     L G   N   +  ++  IG  V+D +VV + + 
Sbjct: 362 LRYTLIPAIVAPIAL----LGTFAVMLLAGFSINSLTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPM 801
               + T  +S R+   +++ E  G  +  ++    +V     +G   +      F + M
Sbjct: 417 -ERLMATQGLSPREATSQAMKEITGAVIGITL-VLTAVFIPMAFGSGSVGVIYQQFTLSM 474

Query: 802 AFGIVVAASSSIFIAAPILLFIYD 825
           A  I+ +A  ++ +   +   +  
Sbjct: 475 AVSILFSAFLALTLTPALCATLLR 498



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 67/178 (37%), Gaps = 6/178 (3%)

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
             +++   +P            +  +   +  ++ ++ + +  L+   +   W   L  + 
Sbjct: 837  MERLVAQLPQGFAVAWTGASLQERQSAAQAPLLMLLSALVVFLVLAALYESWSIPLSVML 896

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             + L +   +    L  +  ++     ++T+IG S  + +++ +  R   +L+    +  
Sbjct: 897  VVPLGLLGAVAAVILRDMPNDVFFKVGMITIIGLSAKNAILIVEFAR---QLHAEGHTLI 953

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSI 813
            D    +    L   + TS+A  + V+P+ +  G       +    +  G++     +I
Sbjct: 954  DAAVTAARLRLRPILMTSLAFTLGVVPLMLASGASAETQHAIGTGVFGGMLSGTLLAI 1011


>gi|320181537|gb|EFW56455.1| RND efflux system, inner membrane transporter CmeB [Shigella boydii
           ATCC 9905]
          Length = 468

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/487 (10%), Positives = 129/487 (26%), Gaps = 38/487 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLIVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +       +     + N+       G       
Sbjct: 169 LNGVGDVQLFGAQ-YAMRIWLDADLLNKYKLPPVDVINQLKVQNDQIAAGQLGGTPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +        L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLVELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGG 482
            + FFGG
Sbjct: 455 PMAFFGG 461



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 74/206 (35%), Gaps = 3/206 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLVELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV 793
             G  V  +M      +PMA +GGS 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGST 463


>gi|213582963|ref|ZP_03364789.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 191

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 107/171 (62%), Gaps = 1/171 (0%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  +L + G + ++++ I++L+Y+  RF+W  A G +  L  D+  TLG  +LF IE
Sbjct: 3   GPSVGADLAQTGAMALLVALISILVYVGFRFEWRLAAGVVIALAHDVIITLGILSLFHIE 62

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + S+ +TL R++ TS 
Sbjct: 63  IDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNVSLTQTLHRTLITSG 121

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +   R 
Sbjct: 122 TTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKLGMKRE 172


>gi|330897819|gb|EGH29238.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 1063

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 159/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 SEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGADGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLSGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDRMLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQD 577



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/252 (10%), Positives = 80/252 (31%), Gaps = 6/252 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +     +      +    +       +           +        +  +    V+K 
Sbjct: 796  QLKVRNNLGEMSPLATFVKVSDTAGPDRVMHYNGFITAEINGAAAPGYSSGQAQAAVEKL 855

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
            + E +P   I     +  +          V  +   +A L+       W   L  I  + 
Sbjct: 856  LREELPTGMIYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQYESWSLPLAVILIVP 915

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + +   +    + G + N+     ++ L+G +  + +++ +  +         +S  D +
Sbjct: 916  MTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAKD---KQAEGMSPLDAV 972

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + TS A  + V+P+ +    G  +  +  + +  G++      + +   
Sbjct: 973  LEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPV 1032

Query: 819  ILLFIYDWRAKN 830
              + I ++  + 
Sbjct: 1033 FYVLIRNYVERQ 1044



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVAATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLSGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|170733064|ref|YP_001765011.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           cenocepacia MC0-3]
 gi|169816306|gb|ACA90889.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia MC0-3]
          Length = 1059

 Score =  176 bits (446), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 143/520 (27%), Gaps = 40/520 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   G+L       PQ  + ++P   P               +V+    
Sbjct: 10  RPVFAWIVALAIVVAGVLAI-----PQLPIAQYPRLAPP-------------RVVITAAY 51

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG--IGVFSMRQIQNK--ITLSFADSRFKENIADKVTL 117
                  +       +   L      +   +         I ++F+     +     V  
Sbjct: 52  PGASTETVDGDVGSIIEESLDGADGLLYYATSSDGHGNLEIDVTFSPGTDPDIALVDVNN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L     +  +         ++L           + +    + R  + ++  +
Sbjct: 112 RLKQVEPRLPQQVVQQGIGVFKAANTFLMLVTLTSTDGTRDSAQLGDYLNRYVLRELKRA 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP++LR+       +     + N +      G        
Sbjct: 172 PGVGAAELWDAGE-ALRVWLDPNKLREYDLGADDVIAAIGVQNATVTAGAIGDAPFERGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K +++                +    +   +             +       
Sbjct: 231 QLTATIVVKGQLT-------------SPEEFGRIVLKSKQDGSVVRVADVARVEIGRDDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T        A L     P     +          
Sbjct: 278 SFYSRLNGRPAATVGIQLGPRGNALETSNAIRARLAELSRVLPPGVAMEIPFDGAHFVTI 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV  V+++ +   ++ LV    I + ++     +   G ++ + ++
Sbjct: 338 AIREVVLTLVEAVVLVFCVMWLFLRDLRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTM 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +      R    I           V +
Sbjct: 398 FGLVLAIGILVDDAIVVVESVHRVMEEGVSPRDATRRAMKRIGGAIVGVTAVLTAVFVPM 457

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            FF G      R FA+ M  S+L+S F A+S+  A+   +
Sbjct: 458 AFFPGAVGGIYRQFAVAMIASMLVSSFMALSLTPALCANL 497



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 78/194 (40%), Gaps = 7/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
             +  +     +++ ++P          G       IR+ ++ ++ + + +   +W+  +
Sbjct: 303 ETSNAIRARLAELSRVLPPGVAMEIPFDGAHFVTIAIREVVLTLVEAVVLVFCVMWLFLR 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              + L     + + +         FG+  N+  +  ++  IG  V+D +VV + +    
Sbjct: 363 DLRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTMFGLVLAIGILVDDAIVVVESVH--- 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           ++    +S RD   +++    G  V  +       +PMA +    G +   FA+ M   +
Sbjct: 420 RVMEEGVSPRDATRRAMKRIGGAIVGVTAVLTAVFVPMAFFPGAVGGIYRQFAVAMIASM 479

Query: 806 VVAASSSIFIAAPI 819
           +V++  ++ +   +
Sbjct: 480 LVSSFMALSLTPAL 493



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 82/252 (32%), Gaps = 16/252 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS + +   ++    ++  N     +   R         A   +  +      
Sbjct: 796  RTGDMVPLSAIAAPHWTVGPVMLNRYNGYPSLDISGRAATGTSSGAAMAEMERLAGALPV 855

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             +         E         L+      V +S +A+ + +   ++ W   L  +T + L
Sbjct: 856  GVGFDWVDAAREEQVAARQTPLL------VGLSVLAVFMALAALYESWTVPLSVLTIVPL 909

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +      G+  ++     ++T++G +  + +++    R    L  + +  R  + 
Sbjct: 910  GMIGAIAAALARGMPNDVYFKVGMITVVGLAAKNAILIVQYARD---LAGSGVPLRQAVI 966

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA-- 817
             +        + TSMA  + V+P+ +    G     S       G++ A    +  A   
Sbjct: 967  DAAAARFRPIMMTSMAFLLGVVPLVLATGAGAESRRSIGTGAFGGVLAATMFGLVFAPVA 1026

Query: 818  -PILLFIYDWRA 828
              +++ I     
Sbjct: 1027 FRVVVSIGRRGR 1038


>gi|58585045|ref|YP_198618.1| preprotein translocase subunit SecD [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58419361|gb|AAW71376.1| Preprotein translocase subunit SecD [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 493

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 186/505 (36%), Positives = 291/505 (57%), Gaps = 23/505 (4%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
              I  + L + LPNF            + K RISLGLDL+GGS L+L VD D +    L
Sbjct: 1   MLCIFLLALYVILPNFFNNKF------FISKKRISLGLDLKGGSSLLLNVDLDFYFKEKL 54

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
            M +DE++  L        S++    ++ +   +    + ++  V               
Sbjct: 55  GMLADEIKESL-LIKNIESSVQ-SGKQVVVILNNIDDYKKVSALVYK------------I 100

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
             NL +      I I       + +I+  I +S+  +++R+D++G  E ++Q+ G ++IL
Sbjct: 101 NPNLELNRKSTSILISYKPYYKNSLINEVISESISNVQRRLDKLGTKEVSVQKQGQNKIL 160

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPN--NSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           +Q+PG +D  +++ LLG TAK++FH V  N    +      +  L+DS GN Y +  K E
Sbjct: 161 VQVPGVEDTEQIKSLLGKTAKLAFHLVNTNVAKMQDVDHKTIVILKDSLGNSYPIFRKTE 220

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           I G  L    +       KP V   FD + ++RF ++T++N+GKP A+VLD  VLT P I
Sbjct: 221 IGGDSLVN-ASVRSGSLGKPTVHFKFDSIASKRFAKITKENVGKPFAIVLDNTVLTVPTI 279

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            + I +G+ +ISGNFT + A  LA +L++G+LP  L I+EE+N+G  LG +SI  G  A+
Sbjct: 280 REPILNGEGEISGNFTEKQASELAILLKSGALPAPLKIIEEKNIGPSLGEESIKAGEIAV 339

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
           +  +V + LF+I++YGK GL+A  ++  NVI  L +L+LL ATLTLP IAGI L +G++V
Sbjct: 340 IISIVAVALFIIMIYGKLGLLASVALLFNVISILLILTLLEATLTLPGIAGIALTVGMSV 399

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D+N+L+ ERIREE R  + +  +++ GF  A  TI DSNIT LIA  ++F  G G +RGF
Sbjct: 400 DANVLIFERIREEIRSGKRIVRAIEEGFKNAIKTILDSNITTLIAAGIMFVIGSGTIRGF 459

Query: 489 AITMGLSILISMFTAISIVRAMMIF 513
           +IT+ + IL SMF+AI++ + ++  
Sbjct: 460 SITLSIGILCSMFSAITVTKLLVEL 484



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 77/163 (47%), Gaps = 4/163 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  E I+ G + VIIS +A+ ++I + +     L A   L+ ++   L    L    
Sbjct: 324 GPSLGEESIKAGEIAVIISIVAVALFIIMIYG-KLGLLASVALLFNVISILLILTLLEAT 382

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A +   +G SV+  V++++R+R+ ++           I++     +   + +++
Sbjct: 383 LTLPGIAGIALTVGMSVDANVLIFERIREEIRSGKR---IVRAIEEGFKNAIKTILDSNI 439

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              I+   M V G   I  F+I ++ GI+ +  S+I +   ++
Sbjct: 440 TTLIAAGIMFVIGSGTIRGFSITLSIGILCSMFSAITVTKLLV 482


>gi|307579825|gb|ADN63794.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 1055

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 74/679 (10%), Positives = 173/679 (25%), Gaps = 48/679 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  MI   G++           ++ +PS  P               + +     
Sbjct: 9   PIFAWVVAIMISLAGVISIF-----NLGVESYPSIAPP-------------QVTITAHYP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                 L+      +   L            S    Q  ITL+F      +    +V   
Sbjct: 51  GASADTLEKSVTQVIEQQLTGIDHLLYFSSSSSSNGQATITLTFESGTNPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D         +  +    ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPAFDKDALNDFVGTHVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    + +++       N        G      +  
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYHLSASQVYNAISTQNVQFAAGSIGADPAPANQS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K   +                +    I                 +        
Sbjct: 230 FTTTVTTKGRFT-------------TPEQFENIILRTNNDGSTVRLKDVARVKIGAESYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                     +          +    +E        L++                    S
Sbjct: 277 IDSQYNGKPASAFGVQLLPGANALKVVEGIHSKMDELQSTFPQGVTWFTPYETTTFIKIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T A    LV +V+ + +   +  ++    I + ++ T A +  +G T+   ++ 
Sbjct: 337 IKEVVKTLAEAIVLVFLVMLIFLQNFRATIIPTLVIPVALLGTFAGMLAIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMTEEHLEPKAATQKAMTQITGAVIAISIVLTAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A++   A+            +    ++ +   
Sbjct: 457 AMQPGAAGAIYKQFALTIAMSMGFSAFLALTFTPALCASFLKSSHGQNKNWIFRTFEKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     I+    R   W    ++L  +C              + +G     V    
Sbjct: 517 EKLSHRYVRLISNALKRTPRWTAFFAVLVVLCGFLFTRMPSSFLPEEDQGFALAIVQLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +        ++       + +G            GD+V    +     ++  E   
Sbjct: 577 GATKTRTNEVFTQMRAVLEKIPSIEGLMQITGFSFVGSGDNVGMGFIRLKPWQERQETAD 636

Query: 648 LSTIQNTEIVGPKISRELI 666
               Q   +       ++ 
Sbjct: 637 QLIQQLNGMFYGIKGAQIF 655



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 80/248 (32%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   I  Q      +          +++     +     ++    P 
Sbjct: 260 VRLKDVARVKIGAESYGIDSQYNGKPASAFGVQLLPGANALKVVEGIHSKMDELQSTFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                T        +  I++ +  +  + + + + + I  + +   +     + + +  T
Sbjct: 320 GVTWFTPYETTTFIKISIKEVVKTLAEAIVLVFLVMLIFLQNFRATIIPTLVIPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    +  +    K++ +
Sbjct: 380 FAGMLAIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERIMTEEHLEPKAATQKAMTQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  S+      +P A+     G++   FA+ +A  +  +A  ++     +     
Sbjct: 438 ITGAVIAISIVLTAVFIPSAMQPGAAGAIYKQFALTIAMSMGFSAFLALTFTPALCASFL 497

Query: 825 DWRAKNAR 832
                  +
Sbjct: 498 KSSHGQNK 505



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + I  T+ F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLLIVPIGILGTIVFSMLRGLPNDLYFKIGLITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----------GGSV 793
               +    T  + R+    +        + TS+A  + VLP+A+            G  V
Sbjct: 949  ---VAQRATGKTLREATIDAARLRFRPILMTSLAFILGVLPLAISSGAGANARHSIGTGV 1005

Query: 794  IGSFAIPMAFGIVV 807
            IG       FG++ 
Sbjct: 1006 IGGMTFATIFGVIF 1019



 Score = 42.8 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 48/527 (9%), Positives = 134/527 (25%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R   W      ++   G L        +      P              +G +  ++++ 
Sbjct: 533  RTPRWTAFFAVLVVLCGFL------FTRMPSSFLPEED-----------QGFALAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKE-------GIGVFSMRQIQNKITLSF----ADSRFKEN 110
                          ++R+ L+K         I  FS     + + + F         +E 
Sbjct: 575  PPGATKTRTNEVFTQMRAVLEKIPSIEGLMQITGFSFVGSGDNVGMGFIRLKPWQERQET 634

Query: 111  IADKVTLF---LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
                +        G+            +    +     +  Q+          +    ++
Sbjct: 635  ADQLIQQLNGMFYGIKGAQIFVVNLPTIRGLGQFGGFDMWLQDRNGLGHEALTQARNVVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +   +  +          +   +QL    D  +   +  +T+ +               
Sbjct: 695  GKAAQRQDVMVGVRPNGLENSPQLQLT--VDRVQGESMGLSTSDIYKAIQ---------- 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              +     +D        +V +    +   + +     + P    +              
Sbjct: 743  LMLAPTYVNDYFSEGRIKRVNMRADDMYRTSPDSLRNFYTPSSSATDVNGQPLMIPLSNV 802

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                   A     R      IN           G  + +   +LA+++            
Sbjct: 803  VKADWIYAAPSLDRYNGYSAINIV----GNTAPGTSSGQAMKVLASIVNDDLPHGFGIDW 858

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
               +    +  ++        V  + L +  +        +     + + ++ T+    L
Sbjct: 859  SGMSYQEIIAGNAATLLLVLSVVVVFLCLSALYE-SWSIPVAVLLIVPIGILGTIVFSML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G    L    G++  IGLA  + IL+ E    +    +++  +        +  I  ++
Sbjct: 918  RGLPNDLYFKIGLITVIGLAAKNAILIVEFAVAQRATGKTLREATIDAARLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +  ++  + L      G  A       +   +  +    +  +  + 
Sbjct: 978  LAFILGVLPLAISSGAGANARHSIGTGVIGGMTFATIFGVIFIPLLF 1024


>gi|206563791|ref|YP_002234554.1| putative quinoxaline efflux system transporter protein
           [Burkholderia cenocepacia J2315]
 gi|198039831|emb|CAR55805.1| putative quinoxaline efflux system transporter protein
           [Burkholderia cenocepacia J2315]
          Length = 1057

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 65/585 (11%), Positives = 160/585 (27%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  +I  +GL+       P      +P  +P + +                  
Sbjct: 10  RPIFAVVLSIVIFALGLISI-----PMLPAGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             + ++ ++F      +  A +V   +  
Sbjct: 56  PKEIAESVAEPLEEAINGVEGIMYMKSVAGSDGSLQVVVTFLQGVDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            ++     +     D++       
Sbjct: 116 ALSRLPDEVRQYGVTTQKQSPTPLMYVSLYSPDNSRDSLYLRNYLTLHVKDELSRLTGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL     T + +       N        G       +    
Sbjct: 176 DVGVYGSGNYAMRLWLDPNRLASRGLTASDVIAAVREQNVQVSAGQLGAEPSPKKNDFLV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +  +    +         I           
Sbjct: 236 SINVRGRL-------------RTVQEFGDIVLRNGDDGQVVKLSDVARIELGAGDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L     P                S   
Sbjct: 283 YFNDKHSAVVGIFLSPGANALDVAKAVYAKLDELSKRFPPGVAYRPVWDPTVFVRESIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G+V
Sbjct: 343 VQHTLVEAVVLVVLVVILFLQTWRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAQGLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS   ++++  A+   ++R        +       F  +  
Sbjct: 463 GVTGQFYKQFAVTIAISTVISAINSLTLSPALAAKLLRPHGAPKDALTRGLDRAFGWLFH 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R+     G+          +   +             +
Sbjct: 523 PFNRFFERSSDRYHGVVGRTLKRRGVVFAVYAALLAATALLFNAV 567



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  +  L G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S RD   +++ E  G  V  ++      +PMA   G        FA+ +A   V
Sbjct: 425 Q---GLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMSGVTGQFYKQFAVTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAINSLTLSPALAAKLLR 500



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 76/208 (36%), Gaps = 10/208 (4%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII---SAIAML 681
             GD+  +         K+ +I          +    +S + + +    +++   + + + 
Sbjct: 832  IGDADPKMMSSSQAIAKLQQIAKEVLPPGITLEWTDLSYQQVTQSNAAIVVFPLAVMLVF 891

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +   ++ W   L  I  + + +   L    L G + N+     ++ L+G +  + +++
Sbjct: 892  LVLASLYESWTLPLAVILIVPVCMCAALFGVWLSGGDNNVFVQVGLVVLMGLACKNAILI 951

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +  R+   L        +   ++    L   V TS+A     +P+ +    G  V  + 
Sbjct: 952  VEFARE---LEIQGKGVVEAALEACKLRLRPIVMTSVAFIAGSVPLLIGSGAGSEVRAAT 1008

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYD 825
             I +  G++      +F+     + I  
Sbjct: 1009 GITVFAGMLGVTLFGLFLTPVFYVAIRK 1036


>gi|34557170|ref|NP_906985.1| multidrug resistance protein MEXB [Wolinella succinogenes DSM 1740]
 gi|34482886|emb|CAE09885.1| MULTIDRUG RESISTANCE PROTEIN MEXB [Wolinella succinogenes]
          Length = 1030

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/567 (11%), Positives = 154/567 (27%), Gaps = 40/567 (7%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           ++  +I   GL+           ++ +P  +P               + +  +       
Sbjct: 1   MISIIIVLAGLVSI-----ETLPIEEYPEVVPP-------------QVQVAANYPGASAD 42

Query: 69  FLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
            L       L   +        I   +    +  + + F      +     V   +Q   
Sbjct: 43  TLAQTVGAPLEQEINGVDNMIYISSVATSTGEMNLNVYFEIGTDPDQATIDVNNRVQAAL 102

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           SKL  + ++  +    +    + +            +  S   +   +D +   +     
Sbjct: 103 SKLPEEVQRQGVTARKKSSSIVEVLSIYSPDSSQTPLYISNYALINVVDDLKRVKGVGDI 162

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
           +        +     P RL +   T   +       N+      FG   + +     Y V
Sbjct: 163 VLFGGKDYSIRVWLKPDRLAKHSLTPNDVIAAIKEQNSQFATGQFGQEPIANKPMFTYTV 222

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             K                    +    I   +             +            +
Sbjct: 223 TTKGR-------------MVDAEEFGNIILRADKSGATLRLKEVATVELGAKSYTFDATM 269

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       +   +   T+         L           +          S     
Sbjct: 270 DGKPAVPIGVFLQPGANALETVGLVNAEMDRLAEKFPSGMSYAIPYNTTKFVQISIQEVI 329

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T      LV +++++ +   +  ++   ++ +++I T A +  LG ++ L ++ G++L 
Sbjct: 330 KTFIEAMALVALIVYLFLQNLRTTIIPLLAVPVSIIGTFAGMYALGFSINLLTLFGLILA 389

Query: 424 IGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           IG+ VD  I+V E +      +   +  +         S +    +      + + F G 
Sbjct: 390 IGIVVDDAIIVIENVERIHRTEGLPIKEATIKAMQEVTSPVISIVLVLAAVFIPVSFMGG 449

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   + FA+T+ +S+ IS F A+++  A+    ++    +          F       
Sbjct: 450 FTGQMYKQFAMTIVVSVTISGFVALTLTPALCTVFLKEHDSEPFWFVRKFNEFFDFSTRI 509

Query: 540 IQFMRARFWGVGISILFSICSICLLFT 566
                          L  +  I  +  
Sbjct: 510 FTQGVRLVLKYVAISLLLVVGIIYVAF 536



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 70/179 (39%), Gaps = 7/179 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                    +E+   G+   I + I + + +  ++ +W   L  IT +   +   +    L
Sbjct: 842  WSGSSYQEKEMGGTGMQAFIFALIFVFLILAAQYERWLMPLAVITAVPFAVFGAISATWL 901

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+  ++     ++ LIG S  + +++ +     M+     +S  +   ++        V
Sbjct: 902  RGLSNDVYFQIGLVMLIGLSAKNAILIVEFA---MQKREEGLSIVEASLEAARLRFRPIV 958

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             TS+A  I V+P+A+    G +   +    +  G+V A + +IF        +     +
Sbjct: 959  MTSLAFTIGVIPLAISSGAGAASRHAIGTGVIGGMVAATTIAIFFVPLFYTLLERLNER 1017



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 77/231 (33%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V +     +               +        +++    ++     ++ E  P     
Sbjct: 252 EVATVELGAKSYTFDATMDGKPAVPIGVFLQPGANALETVGLVNAEMDRLAEKFPSGMSY 311

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K  +  I++ I   I +   + + +++  +     +  +  + + I  T    
Sbjct: 312 AIPYNTTKFVQISIQEVIKTFIEAMALVALIVYLFLQNLRTTIIPLLAVPVSIIGTFAGM 371

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   NL  +  ++  IG  V+D ++V + +       T  +  ++   K++ E    
Sbjct: 372 YALGFSINLLTLFGLILAIGIVVDDAIIVIENV--ERIHRTEGLPIKEATIKAMQEVTSP 429

Query: 772 ---SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               V    A FI V  M  + G +   FA+ +   + ++   ++ +   +
Sbjct: 430 VISIVLVLAAVFIPVSFMGGFTGQMYKQFAMTIVVSVTISGFVALTLTPAL 480


>gi|148554374|ref|YP_001261956.1| protein translocase subunit secF [Sphingomonas wittichii RW1]
 gi|148499564|gb|ABQ67818.1| protein translocase subunit secF [Sphingomonas wittichii RW1]
          Length = 321

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 106/283 (37%), Positives = 162/283 (57%), Gaps = 2/283 (0%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD   I F+R RF    I+ L +I S+ ++   GLN G+DF GG+ +      
Sbjct: 1   MRLLKLVPDNTNIGFVRVRFIAFVITALLTIASLAVVGARGLNMGVDFVGGLMIEAKFQT 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG-DSVAQTRVLEMVKKKITEIV 646
              L  VRSN++ L +G  S Q F   K   +RL      D  A   V+  V   + +  
Sbjct: 61  VPQLDAVRSNIDGLGVGVSSLQQFGDPKTVSIRLPIPESSDEGATNAVVSKVSASLVKQF 120

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P  T    + V  K+S ELI+ G++ VI++ + + I+ W+R++W F +     ++ D+  
Sbjct: 121 PGVTFTRYDTVSGKVSEELIQNGVLAVILAVLGIAIFSWLRYEWQFGVSTFVAIVHDVLM 180

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           TLGFFAL  +EF+L  VAAVLT+IGYS+NDK+V+ DR+R+NM+ Y   +  + LID S+N
Sbjct: 181 TLGFFALTQLEFDLNIVAAVLTIIGYSINDKMVIDDRIRENMRKY-RQMDMKALIDLSVN 239

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
           ETL R+V TS+   +++  + ++GG V+  FA  M  GIVV  
Sbjct: 240 ETLPRTVMTSVTVMLALGALLLFGGHVLRGFAAAMMLGIVVGT 282


>gi|332086392|gb|EGI91539.1| inner membrane domain protein [Shigella dysenteriae 155-74]
          Length = 468

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/487 (11%), Positives = 130/487 (26%), Gaps = 38/487 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  L     Q  + ++P+  P               + +  +
Sbjct: 7   RRPIFAWVLAIILMMAGALAIL-----QLPVAQYPTIAPPA-------------VSVSAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +Q      +   +        +   S       ITL+F      +    +V 
Sbjct: 49  YPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ     L  + ++  +         ++++    D   +   + S  +     D +  
Sbjct: 109 NKLQLATPLLPQEVQQQGISVEKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D   L +   T   +     + N+       G       
Sbjct: 169 LNGVGDIQLFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTLALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                 +                      +      
Sbjct: 228 QQLNASIIAQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T +        L+         +          
Sbjct: 275 YNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLVELQPFFPQGMKVLYPYDTTPFVQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   +
Sbjct: 335 LSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IGL VD  I+V E +     +++     + +   S+    +    +      +
Sbjct: 395 MFGMVLAIGLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFI 454

Query: 476 VLFFFGG 482
            + FFGG
Sbjct: 455 PMAFFGG 461



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 74/206 (35%), Gaps = 3/206 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 260 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLVELQPFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 320 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 380 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV 793
             G  V  +M      +PMA +GGS 
Sbjct: 438 IQGALVGIAMVLSAVFIPMAFFGGST 463


>gi|66046199|ref|YP_236040.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63256906|gb|AAY38002.1| Hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 1063

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 159/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 SEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGADGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKQSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLSGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDKMLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQD 577



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 89/271 (32%), Gaps = 18/271 (6%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   D  G +++       + L+      ++     +   N                
Sbjct: 785  QQFRQDADQIGQLKVRNNLGEMIPLATFVKVSDTAGPDRVMHYNGFITAEINGAAAPGYS 844

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAMLI 682
               AQ  V +++++++                  ++ + I  G   + +      +A L+
Sbjct: 845  SGQAQAAVEKLLREELP--------TGMIYEWTDLTYQQILSGNTALFVFPLCVLLAFLV 896

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                   W   L  I  + + +   +    + G + N+     ++ L+G +  + +++ +
Sbjct: 897  LAAQYESWSLPLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVE 956

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +         +S  D + ++    L   + TS A  + V+P+ +    G  +  +  +
Sbjct: 957  FAKD---KQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGV 1013

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  G++      + +     + I ++  + 
Sbjct: 1014 AVFSGMLGVTFFGLLLTPVFYVLIRNYVERQ 1044



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVAATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLSGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|107026815|ref|YP_624326.1| hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|105896189|gb|ABF79353.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
          Length = 1047

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/649 (9%), Positives = 158/649 (24%), Gaps = 50/649 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GL+       PQ  + R+PS  P               + +   
Sbjct: 7   RRPVFAWVIALFIILTGLIAI-----PQLPVARYPSVAPP-------------SVTITAS 48

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +    Q +IT++F      E     V 
Sbjct: 49  YPGATPQTMNDGVLSLIERELSGVKNLLYFESSADTSGQAQITVTFKPGTNPEMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V  +L    ++N L+  +     +++     D         +  + R   +++  
Sbjct: 109 NKIKSVEPRLPAAVRQNGLIVESASSGFLMIVSLRSDNGRFDEGALADYMARSVSEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   + L        +    DP +L     + + ++      N        G       
Sbjct: 169 IDGVGRVLQFGS-ERAMRIWVDPQKLINFGLSMSDLTTAIGQQNVQIAPGSLGALPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                     +        +        +      
Sbjct: 228 QRVTVPLTAQGQLA-------------TPEAFAKVVLRANADGSKVVLGDVARVELGSQN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T +      A L           +         
Sbjct: 275 YTFVSRENNKPATLAGVQLAPGANAVKTADAIRARMAELSKSMPSGMSYSIPLDTSPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 335 ISIEKVLHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAMLGTFTVMLLTGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMAEEGLSPKDATSKAMKEITGAIIGVTLVLTAVFL 454

Query: 476 VLFFFGGGAVRGFAITMGLSILISMF------------TAISIVRAMMIFIIRYKKMKSI 523
            +    G     +        +  +F             A  +         +       
Sbjct: 455 PMAMASGSVGVIYKQFTLSMAVSILFSALLALTLTPALCATMLKPIAAGHHEKRGFFGWF 514

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +     R     +    +     +            + +G      
Sbjct: 515 NRRFDRLTKWYETRVGRLVGRTGRVMLVFVAISGALVLGFRSLPSSFLPDEDQGYFITSF 574

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           L             +++L+    S        + +       G + A  
Sbjct: 575 LLPADATAERTHDVVKTLEKHLASRPAIQSSISVIGYGFSGQGSNAAIN 623



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 83/230 (36%), Gaps = 14/230 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q      +  +              ++V     +     ++++ +
Sbjct: 258 SKVVLGDVARVELGSQNYTFVSRENNKPATLAGVQLAPGANAVKTADAIRARMAELSKSM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +  +      +  I K +  ++ + + + + +++     R+    A+ A   + 
Sbjct: 318 PSGMSYSIPLDTSPFVKISIEKVLHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAM- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T     L G   N+  +  ++  IG  V+D +VV + +     +    +S +D  
Sbjct: 377 ---LGTFTVMLLTGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAEEGLSPKDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
            K++ E  G  +  ++      LPMA+  GSV      F + MA  I+ +
Sbjct: 432 SKAMKEITGAIIGVTLVLTAVFLPMAMASGSVGVIYKQFTLSMAVSILFS 481



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 64/150 (42%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + +++S I + + +   ++ W   L  +  + L +   +G   L G+  ++     +
Sbjct: 865  QAPMLMVLSMIVVFLVLAALYESWSIPLSVMLVVPLGLIGAIGAVLLRGMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L        +   ++    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAK---QLREEGKGLIEAAVQASKLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             +  G       +    +  G+V A   +I
Sbjct: 982  MIATGASAETQHAIGTGVFGGMVTATVLAI 1011


>gi|269966122|ref|ZP_06180212.1| putative multidrug efflux membrane fusion protein [Vibrio
           alginolyticus 40B]
 gi|269829269|gb|EEZ83513.1| putative multidrug efflux membrane fusion protein [Vibrio
           alginolyticus 40B]
          Length = 1007

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 187/687 (27%), Gaps = 36/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++   +  +G++      L    +  +P   P                +     
Sbjct: 9   RPKFALVISLAMTLMGMIA-----LKVLPISEYPQISPTVIT---------VSTMYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++        +    +  + + F      +    +V   +  
Sbjct: 55  ADVVKKTVAQPIEAKVNGVEDMIYMSSVIGNDGSYTLRIYFRVGADGDMAQVRVNNLVAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  +  +    +    + +      +    +I  S       ++++   E   
Sbjct: 115 ATSSLPQEVNQIGVTVKKKSSDMLGVITLRSPKQSHDSIYLSNYADLNIVERLKRIEGMS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    +P++L  L  + + +       N        G          QY
Sbjct: 175 DITLLGKKDYSMRIRLNPNKLATLKLSASDVIGAIKTQNIQVAAGKIGGMPAPGDQQYQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++ K  ++                +    I                 +           
Sbjct: 235 VLQTKGRLTSAE-------------EFENIIIRASKKGSLIRLKDVARVEVGAQGYEADG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +    +E                 +  +   +      S   
Sbjct: 282 RMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVYDIAYDSTEYVETSIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV  V+++ +   +  ++   +I +++I T A++ ++G T+   S+ G++
Sbjct: 342 VYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIMGVMGMTINTISLFGLI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +       +           +  + +  L   V +   
Sbjct: 402 LAIGIVVDDAIIVVENVERVIHEEHLDPIPATIQAMKEVTGPVLATTLILLAVFVPVALL 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFL 533
            G + R    FA+T+ +S+LIS   A+++  A+   +         +     N       
Sbjct: 462 PGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLKSTHSQPIVPLRAFNRGFEAIT 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 + F+  R           I  +   F    +  +  +      V    P   ++
Sbjct: 522 RKYQGVVGFLSRRIVLSIGVYGALIAVLAFAFMTVPSSFVPNEDKGVFMVEMRLPDAAAL 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            R+     Q  D   Q    E    V        +      + ++K           +  
Sbjct: 582 QRTAPLMKQYVDELKQMEGVENVVSVAGFSVINMASIPNSGMLIIKLDNWSKRKDPELHQ 641

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAM 680
             ++                + +  A+
Sbjct: 642 RALMNKVNQMLNSTPDAASFVFATPAI 668



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  +   +  +     L   Q    +++     ++   K+  +  P   + 
Sbjct: 266 DVARVEVGAQGYEADGRMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +      +     I +    ++I+ + +   +++  + W   +     + + I  T    
Sbjct: 326 DIAYDSTEYVETSIDEVYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G+  N  ++  ++  IG  V+D ++V + +     ++   +       +++ E  G 
Sbjct: 386 GVMGMTINTISLFGLILAIGIVVDDAIIVVENV--ERVIHEEHLDPIPATIQAMKEVTGP 443

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + T++      +P+A+  G        FA+ +   ++++A +++ +   +   +  
Sbjct: 444 VLATTLILLAVFVPVALLPGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLK 500



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 66/249 (26%), Gaps = 10/249 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                  +                    ++  +        ++ +   D            
Sbjct: 763  RSYQVKVQAEEQYRDNIDDINHLFVRSSSGKMVSLATLVKVKPIFGPDTLSNYNMFSSAT 822

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +         S    + +E +  +                  K          +   +S 
Sbjct: 823  VNGAPAPGYSSGDVVKAIEKLAAESLPSGYSYEWSGMTYQEMKAGNM----APIAFALSL 878

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +   +++  +++ W      +  + + I   +G   L G  F+L     V+ LIG S   
Sbjct: 879  LFTYLFLVAQYESWTIPAAVMMAVPVAILGAMGTLLLVGQPFDLYVQIGVVILIGMSAKV 938

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ +  +  +      +S  D   ++          T+ A    V P+ +    G + 
Sbjct: 939  AILIVEFAK--VLREEKGLSIIDAAKEAARIRFRAVQMTAFAFIWGVFPLVIASGAGAAS 996

Query: 794  IGSFAIPMA 802
              S    + 
Sbjct: 997  RHSLGFAVF 1005


>gi|213582101|ref|ZP_03363927.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 448

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/473 (10%), Positives = 118/473 (24%), Gaps = 38/473 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           +          
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++
Sbjct: 336 SIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNIT 469
             +VL IGL VD  I+V E +      +  +   +      +    +    + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMV 448



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 65/186 (34%), Gaps = 3/186 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A  +++     ++ +  P 
Sbjct: 260 VKLGDVATVELGAEKYDYLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 320 GLEYKIAYETTSFVKASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 380 FSVLYAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 437

Query: 768 TLGRSV 773
             G  V
Sbjct: 438 IQGALV 443


>gi|254229048|ref|ZP_04922468.1| acriflavin resistance plasma membrane protein [Vibrio sp. Ex25]
 gi|151938339|gb|EDN57177.1| acriflavin resistance plasma membrane protein [Vibrio sp. Ex25]
          Length = 1046

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 69/626 (11%), Positives = 174/626 (27%), Gaps = 36/626 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++   +  +G++      L    +  +P   P                +     
Sbjct: 9   RPKFALVISLAMTLMGMIA-----LKVLPISEYPQISPTVIT---------VSTMYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +   + ++        +    +  + + F      +    +V   +  
Sbjct: 55  ANVVKKTVAQPIEAKVNGVEDMIYMSSVIGNDGSYTLRIYFRVGADGDMAQVRVNNLVAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  +  +    +    + +      +    +I  S       ++++   E   
Sbjct: 115 ATSSLPQEVNQIGVTVKKKSSDMLGVITLRSPKQSHDSIYLSNYADLNIVERLKRIEGMS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    +P++L  L  + + +       N        G          QY
Sbjct: 175 DITLLGKKDYSMRIWLNPNKLATLKLSASDVIGAIKTQNIQVAAGKIGGMPAPGDQQYQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++ K  ++                +    I                 +           
Sbjct: 235 VLQTKGRLTSAE-------------EFENIIIRASKKGSLIRLKDVARVEVGAQGYEADG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +    +E                 +  +   +      S   
Sbjct: 282 RMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVYDIAYDSTEYVETSIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV  V+++ +   +  ++   +I +++I T A++ ++G T+   S+ G++
Sbjct: 342 VYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIMGVMGMTINTISLFGLI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +       +           +  + +  L   V +   
Sbjct: 402 LAIGIVVDDAIIVVENVERVIHEEHLDPIPATIQAMKEVTGPVLATTLILLAVFVPVALL 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFL 533
            G + R    FA+T+ +S+LIS   A+++  A+   +               N       
Sbjct: 462 PGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLKSTHSQPIAPLRAFNRGFEAIT 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 + F+  R           I  +   F    +  +  +      V    P   ++
Sbjct: 522 RKYQGLVGFLSRRIVLSIGVYGALIAVLAFAFMTVPSSFVPNEDKGVFMVEMRLPDASAL 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLV 619
            R+     +  D   Q    E    V
Sbjct: 582 QRTAPLMKKYVDELKQMEGVENVVSV 607



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  +   +  +     L   Q    +++     ++   K+  +  P   + 
Sbjct: 266 DVARVEVGAQGYEADGRMNNEPAAVLALYQLPTANALDVMERVKEAMKEYEKSFPDDLVY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +      +     I +    ++I+ + +   +++  + W   +     + + I  T    
Sbjct: 326 DIAYDSTEYVETSIDEVYETLVIAVLLVTFVVYVFLQNWRATIIPTLAIPVSIIATFAIM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G+  N  ++  ++  IG  V+D ++V + +     ++   +       +++ E  G 
Sbjct: 386 GVMGMTINTISLFGLILAIGIVVDDAIIVVENV--ERVIHEEHLDPIPATIQAMKEVTGP 443

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + T++      +P+A+  G        FA+ +   ++++A +++ +   +   +  
Sbjct: 444 VLATTLILLAVFVPVALLPGISGRMFNQFAVTICVSVLISAINALTLTPALCALMLK 500



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 77/279 (27%), Gaps = 10/279 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                  +                    ++  +        ++ +   D            
Sbjct: 763  RSYQVKVQAEEQYRDNIDDIDHLFVRSSSGKMVSLATLVKVKPIFGPDTLSNYNMFSSAT 822

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +         S    + +E +  +                  K          +   +S 
Sbjct: 823  VNGAPAPGYSSGDVVKAIEKLAAESLPSGYSYEWSGMTYQEMKAGNM----APIAFALSL 878

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +   +++  +++ W      +  + + I   +G   L G  F+L     V+ LIG S   
Sbjct: 879  LFTYLFLVAQYESWTIPAAVMMAVPVAILGAMGTLLLVGQPFDLYVQIGVVILIGMSAKV 938

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ +  +  +      +S  D   ++          T+ A    V P+ +    G + 
Sbjct: 939  AILIVEFAK--VLREEKGLSIIDAAKEAARIRFRAVQMTAFAFIWGVFPLVIASGAGAAS 996

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              S    +  G++++      +     + +   R K  R
Sbjct: 997  RHSLGFAVFGGMILSTFVGTLLTPVFFVMMQSLREKFKR 1035


>gi|227887507|ref|ZP_04005312.1| aminoglycoside/multidrug efflux system [Escherichia coli 83972]
 gi|227835857|gb|EEJ46323.1| aminoglycoside/multidrug efflux system [Escherichia coli 83972]
 gi|307554501|gb|ADN47276.1| C-terminal part of acriflavine resistance protein AcrD [Escherichia
           coli ABU 83972]
          Length = 977

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/618 (11%), Positives = 158/618 (25%), Gaps = 29/618 (4%)

Query: 70  LQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
           +    ++  + L              Q  +TLSF      +    +V   LQ    KL  
Sbjct: 1   MTQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQNQLQSAMRKLPQ 60

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
             +   +      + +I+              + +  +     D +              
Sbjct: 61  AVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRVNGVGDIDAYGS 120

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
                    DP++L     T   ++      N        G     D       +  +  
Sbjct: 121 QYSM-RIWLDPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQALNATINAQSL 179

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +                 +                      +                  
Sbjct: 180 L-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKYDYLSRFNGKPA 226

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
           +       +  +   T E        L           V          S      T   
Sbjct: 227 SGLGVKLASGANEMATAELVLNRLDELAQYFPHGLEYKVAYETTSFVKASIEDVVKTLLE 286

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              LV +V+++ +   +  L+   ++ + ++ T ++L   G ++   ++  +VL IGL V
Sbjct: 287 AIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSVNTLTMFAMVLAIGLLV 346

Query: 429 DSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---A 484
           D  I+V E +      +  +   +      +    +    +      V + FFGG     
Sbjct: 347 DDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLSAVFVPMTFFGGTTGAI 406

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLI 534
            R F+IT+  ++++S+  A+ +  A+   +           +       +          
Sbjct: 407 YRQFSITIVAAMVLSVLVAMILTPALCATLLKPLKKGEHHGQKGFFAWFNQMFNRNSERY 466

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A    R+  W V   +L        L        ++ +G     V           
Sbjct: 467 EKGVAKILHRSLRWIVIYVLLLGGMVFLFLRLPTSFLPLEDRGMFTTSVQLPSGSTQQQT 526

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              +E ++    + +  +    F        G+     R+   +K          T    
Sbjct: 527 LKVVEQIEKYYFTHEKDNIMSVFATVGSGPGGNGQNVARMFIRLKDWSERDSKTGTSFAI 586

Query: 655 EIVGPKISRELIRKGIVG 672
                K   ++    ++ 
Sbjct: 587 IERATKAFNKIKEARVIA 604



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 87/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D   +      + L        + +A   ++     ++ +  P 
Sbjct: 200 VRLGDVATVEMGAEKYDYLSRFNGKPASGLGVKLASGANEMATAELVLNRLDELAQYFPH 259

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I   +  ++ +   + + +++  + +   L     + + +  T
Sbjct: 260 GLEYKVAYETTSFVKASIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGT 319

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A++  IG  V+D +VV + +     +    ++ R+   KS+ +
Sbjct: 320 FSVLYAFGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEGLTPREATRKSMGQ 377

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PM  +GG+       F+I +   +V++   ++ +   +   + 
Sbjct: 378 IQGALVGIAMVLSAVFVPMTFFGGTTGAIYRQFSITIVAAMVLSVLVAMILTPALCATLL 437

Query: 825 DWRAK 829
               K
Sbjct: 438 KPLKK 442



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            IS + + + +   ++ W      +  + L +   L    + G+E ++     +LT+IG 
Sbjct: 816 AISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLATWMRGLENDVYFQVGLLTVIGL 875

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
           S  + +++ +   +   +        +    +  + L   + TS+A    VLPMA     
Sbjct: 876 SAKNAILIVEFANE---MNQKGHDLFEATLHACRQRLRPILMTSLAFIFGVLPMATSTGA 932

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G     +    +  G++ A   +I+      + +        R
Sbjct: 933 GSGGQHAVGTGVMGGMISATILAIYFVPLFFVLVRRRFPLKPR 975


>gi|153955750|ref|YP_001396515.1| preprotein translocase subunit SecF [Clostridium kluyveri DSM 555]
 gi|219856118|ref|YP_002473240.1| hypothetical protein CKR_2775 [Clostridium kluyveri NBRC 12016]
 gi|146348608|gb|EDK35144.1| SecF [Clostridium kluyveri DSM 555]
 gi|219569842|dbj|BAH07826.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 294

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 10/288 (3%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R     IS++  +  I  + T GL YG+DFKGG  + +      +   V S ++     
Sbjct: 10  KRKIWFTISLIVIVIGIFTMATKGLEYGLDFKGGTIVEINLGSNFNKEDVDSIIKKYSKD 69

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
             S ++                 +   +  +  + K +      S++ N E +G  I +E
Sbjct: 70  FQSTKSD--------NKSITIKSTSLSSDNVNNIVKDVKAKYKKSSLTNQENIGAVIGKE 121

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              K I  VI++ IAM IYI IRF+  + + A+ +L+ +I   L  +A+F I  +   +A
Sbjct: 122 TRVKAIQAVIVAIIAMFIYIGIRFELSYGIAAMISLVHNILVMLSVYAIFRISIDTNFIA 181

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A LT++GYSV+D +VV+DR+R+N   Y        + D S+ +TL RS+ T +   I++ 
Sbjct: 182 ATLTVMGYSVHDTIVVFDRIREN-HKYMRGQEPEMVADASVTQTLARSINTVLTVVITLA 240

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + V     I  F+ P+  G++    SSI IA+P  + I        +
Sbjct: 241 SVYVL-VPSIRIFSEPILIGVITGCYSSICIASPCWVIIKKRMINRKK 287


>gi|144897817|emb|CAM74681.1| multidrug resistance protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 1022

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 73/525 (13%), Positives = 156/525 (29%), Gaps = 39/525 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL+        +  +  +P+                     +  
Sbjct: 9   RRPVLATVMSLMIVLVGLVA-----YDRLPVREYPNIDEPVVT---------VETTYKGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + ++   +     R   ++IT+ F  +R  ++ A  V   +  
Sbjct: 55  SAEIVETQVSKILEDSLAGIEGIDVLSSLSRSESSQITIRFKVTRDADSAASDVRDRVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D ++ ++         I+    + D     A+  S    R    ++       
Sbjct: 115 VRGKLPEDVEEPVIAKVEADAQPIIYLAFSSD--RHDALFVSDYAWRFVRTRLQNLTGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  R+     T   +       N               +  ++ 
Sbjct: 173 DIRIFGERKYAMRIWLDRVRMAAYGMTPQDVENALKRQNLEVPAGRIESAEREFTVLSET 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + S                     I   E             +           
Sbjct: 233 DLKTPEQFSA--------------------IILAESKGYPIRLGDIAKVEIGPQDERRVT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +          +   +R          V   +      S   
Sbjct: 273 RFNGSSAVALGVVKQSVANPLDVSSAVRGVLPEIRENLPEGMSVDVGYDSSVFIERSIEA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F  +   +  L+   +I +++I   AL+ +LG T+   ++  +V
Sbjct: 333 VFRTIVEAVILVVLVIFFFLRTVRATLIPLVTIPVSLIGAFALMYVLGFTINTLTLLSMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G       +    IT     V L F  
Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGVEPVKAALDGSREIAFAVIAMTITLAAVYVPLAFMT 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           G   +    FA+T+  ++++S F A+++   M   ++R++   S 
Sbjct: 453 GRTGKLFVEFALTLAAAVMVSGFAALTLSPMMCSRLLRHETKHSR 497



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 86/250 (34%), Gaps = 7/250 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P+ L  +       Q      +        L  ++    + +  +  +  V  +I E +P
Sbjct: 252 PIRLGDIAKVEIGPQDERRVTRFNGSSAVALGVVKQSVANPLDVSSAVRGVLPEIRENLP 311

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                +            I      ++ + I +++ I+   +     L  + T+ + +  
Sbjct: 312 EGMSVDVGYDSSVFIERSIEAVFRTIVEAVILVVLVIFFFLRTVRATLIPLVTIPVSLIG 371

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                 + G   N   + +++  IG  V+D +VV + +    +     +           
Sbjct: 372 AFALMYVLGFTINTLTLLSMVLAIGLVVDDAIVVLENI---FRHIEEGVEPVKAALDGSR 428

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     +  ++      +P+A   G        FA+ +A  ++V+  +++ ++  +   +
Sbjct: 429 EIAFAVIAMTITLAAVYVPLAFMTGRTGKLFVEFALTLAAAVMVSGFAALTLSPMMCSRL 488

Query: 824 YDWRAKNARI 833
                K++RI
Sbjct: 489 LRHETKHSRI 498



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 65/168 (38%), Gaps = 8/168 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               V   ++ + + + +  +F+ +      + T+ L +   L    L G   N+ +   +
Sbjct: 847  AMWVTFALALLFIYLVLAAQFESFVDPFVIMLTVPLSMAGALAALKLTGGTINVYSQIGL 906

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG      +++ +    + +L        + + ++    L   + T+ A  +  +P+
Sbjct: 907  VTLIGLITKHGILIVEF---SNQLRDQGKPMMEAVVEAAALRLRPILMTTGAMVLGAIPL 963

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A+    G          +  GI V    ++F+  P+   +   + ++ 
Sbjct: 964  ALAHGAGAESRQQIGWVIVGGITVGTFFTLFVV-PVAYTLLAKKTRHG 1010


>gi|186681519|ref|YP_001864715.1| acriflavin resistance protein [Nostoc punctiforme PCC 73102]
 gi|186463971|gb|ACC79772.1| acriflavin resistance protein [Nostoc punctiforme PCC 73102]
          Length = 1115

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 64/537 (11%), Positives = 157/537 (29%), Gaps = 22/537 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   I   GL+        Q  +   P+            L+      L   
Sbjct: 9   RRPIMTTLVMVGILIFGLIS-----YQQLPVSDLPNVDYPT-------LQ--VTANLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +        +      ++TL F  +R  +  A  V   +  
Sbjct: 55  SPETMAASVATPLEQQFSSIAGLSSMNSTSSLGTTQLTLQFDLNRDIDGAAQDVQSAIAK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  +                ++    N   +    +++  E +     ++ + +  
Sbjct: 115 GAKQLPTNMPNPPSYRKVNPADQPVLYISLNSSILPLSTVDKYAETL--LAQRLSMVDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  + DP  L        +++      N +        +    +    
Sbjct: 173 AQVQVFGSQKYAVRIQLDPEALSVKGIGIDEVADAIANGNVNLPTGTLYGKQQNSTIQAN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + D      + +               V  S +      ++   +       A     
Sbjct: 233 GQLNDAASYRSLSVAYQNGAPVQLGELGQVLDSVENDKIASWYFPVKK--ESREAGEKSQ 290

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              +           +   +    ++    L    R          +      +   S  
Sbjct: 291 SKNSGVRAIVLAIQRQPGTNTVQVVDAIKKLLPTFRTQIPAAVNMDILYDRSQSIRESVD 350

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  +   LV++V+F+ +      ++   ++ L+++ T  ++ LLG +L   S+  +
Sbjct: 351 DVQFTLLLTIALVVLVIFLFLRNISATVIPSLAVPLSIVATFGVMVLLGFSLDNLSLMAL 410

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  +++ E I       +S   +   G      TI    I+ +   + + F 
Sbjct: 411 TLSVGFVVDDAVVMLENIVRHMEMGESRMEAALNGSREIGFTILSMTISLVAVFIPILFM 470

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
               G   R FA+T+ ++IL+S   ++S+   +    +     +           L 
Sbjct: 471 EGILGRLFREFAVTISVAILVSGVISLSLTPMLCSRFLSPPHHEQESEGDEEHTSLR 527



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 91/264 (34%), Gaps = 12/264 (4%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L     N      G +   + +     ++     ++                   + L  
Sbjct: 244 LSVAYQNGAPVQLGELGQVLDSVENDKIASWYFPVKKESREAGEKSQSKNSGVRAIVLAI 303

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAM 680
           Q        +V++ +KK +              +    S+ +          ++++   +
Sbjct: 304 QRQPGTNTVQVVDAIKKLLPTFRTQIPAAVNMDILYDRSQSIRESVDDVQFTLLLTIALV 363

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ++ I++  +     +     + L I  T G   L G   +  ++ A+   +G+ V+D VV
Sbjct: 364 VLVIFLFLRNISATVIPSLAVPLSIVATFGVMVLLGFSLDNLSLMALTLSVGFVVDDAVV 423

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----G 795
           + + +   ++      S  +       E +G ++ +   + ++V    ++   ++     
Sbjct: 424 MLENI---VRHMEMGESRMEAALNGSRE-IGFTILSMTISLVAVFIPILFMEGILGRLFR 479

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ ++  I+V+   S+ +   +
Sbjct: 480 EFAVTISVAILVSGVISLSLTPML 503



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 101/289 (34%), Gaps = 24/289 (8%)

Query: 554  ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               S   + +          +    + +   + + V L+ V +  + +    I+ +    
Sbjct: 834  APDSQYQVIMGVEPKYQQNANALDLLSVRAPSGQLVPLNAVATLSKDVGPLTINHKGQLA 893

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               F   L+          ++ E+ ++ +   +      + +     I    +   +  +
Sbjct: 894  SVTFSFNLKPGVSLGNVTGKIEELARQTLPPTISTGFQGSAQAFQSSIQGLGLLLLVAIL 953

Query: 674  IISAIAMLIY------IWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +I  +  ++Y      + I         GAI TL+           LF ++ N+ A   +
Sbjct: 954  VIYIVLGILYENFIHPLTILSSLPSAGFGAILTLL-----------LFQVDLNIYAFVGI 1002

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + L+G    + +++ D     +       +  D I ++        + T+MAA +  LP+
Sbjct: 1003 ILLVGIVKKNGIMMVDFA---IVARHNGKTPYDAIYEACLVRFRPIMMTTMAALMGTLPI 1059

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+    G        + +  G+V +   ++++      ++  W+ K  +
Sbjct: 1060 ALGLGAGADTRRPLGLAVVGGLVFSQFLTLYLTPVFYTYMESWQTKMKK 1108


>gi|71897997|ref|ZP_00680202.1| Hydrophobe/amphiphile efflux-1 HAE1 [Xylella fastidiosa Ann-1]
 gi|71732241|gb|EAO34296.1| Hydrophobe/amphiphile efflux-1 HAE1 [Xylella fastidiosa Ann-1]
          Length = 1055

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/679 (10%), Positives = 173/679 (25%), Gaps = 48/679 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++           ++ +PS  P               + +     
Sbjct: 9   PIFAWVVAILISLAGVISIF-----NLGVESYPSIAPP-------------QVTITAHYP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                 L+      +   L            S    Q  ITL+F      +    +V   
Sbjct: 51  GASADTLEKSVTQVIEQQLTGIDHLLYFSSSSSSNGQATITLTFESGTNPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D         +  +    ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPAFDRDALNDFVGTHVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    + +++       N        G      +  
Sbjct: 171 GVGSTNQFGAQ-YAMNIWLNPEKLQGYHLSASQVYNAISTQNVQFAAGSIGADPAPANQS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  K   +                +    I                 +        
Sbjct: 230 FTTTVTTKGRFT-------------TPEQFENIILRTNNDGSTVRLKDVARVKIGAESYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +    +E        L++                    S
Sbjct: 277 IDSQYNGKPAGAFGIQLLPGANALKVVEGIHSKMDELQSTFPQGVTWFTPYETTTFIKIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T A    LV +V+ + +   +  ++    I + ++ T A + ++G T+   ++ 
Sbjct: 337 IKEVVKTLAEAIVLVFLVMLIFLQNFRATIIPTLVIPVALLGTFAGMLVIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMTEEHLEPKAATQKAMTQITGAVIAISIVLTAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A++   A+            +    ++ +   
Sbjct: 457 AMQPGAAGAIYKQFALTIAMSMGFSAFLALTFTPALCASFLKSSHGQNKNWIFRTFEKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     I+    R   W    ++L  +C              + +G     V    
Sbjct: 517 EKLSHRYVSLISNTLKRTPRWTAFFAVLVVLCGFLFTRMPSSFLPEEDQGFALAIVQLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +        ++       + +G            G++V    +     ++  E   
Sbjct: 577 GATKTRTNEVFTQMRAVLEKMPSIEGLMQITGFSFVGSGENVGMGFIRLKPWQERQETAD 636

Query: 648 LSTIQNTEIVGPKISRELI 666
               Q   +       ++ 
Sbjct: 637 QLIQQLNGMFYGIKGAQIF 655



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 80/248 (32%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   I  Q                 +++     +     ++    P 
Sbjct: 260 VRLKDVARVKIGAESYGIDSQYNGKPAGAFGIQLLPGANALKVVEGIHSKMDELQSTFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                T        +  I++ +  +  + + + + + I  + +   +     + + +  T
Sbjct: 320 GVTWFTPYETTTFIKISIKEVVKTLAEAIVLVFLVMLIFLQNFRATIIPTLVIPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N   + A++  IG  V+D +VV + +     +    +  +    K++ +
Sbjct: 380 FAGMLVIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERIMTEEHLEPKAATQKAMTQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  S+      +P A+     G++   FA+ +A  +  +A  ++     +     
Sbjct: 438 ITGAVIAISIVLTAVFIPSAMQPGAAGAIYKQFALTIAMSMGFSAFLALTFTPALCASFL 497

Query: 825 DWRAKNAR 832
                  +
Sbjct: 498 KSSHGQNK 505



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 53/134 (39%), Gaps = 14/134 (10%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + I  T+ F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLLIVPIGILGTIVFSMLRGLPNDLYFKIGLITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----------GGSV 793
               +    T  + R+    +        + TS+A  + VLP+A+            G  V
Sbjct: 949  ---VAQRATGKTLREATIDAARLRFRPILMTSLAFILGVLPLAISSGAGANARHSIGTGV 1005

Query: 794  IGSFAIPMAFGIVV 807
            IG       FG++ 
Sbjct: 1006 IGGMTFATIFGVIF 1019



 Score = 42.4 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 45/527 (8%), Positives = 132/527 (25%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R   W      ++   G L        +      P              +G +  ++++ 
Sbjct: 533  RTPRWTAFFAVLVVLCGFL------FTRMPSSFLPEED-----------QGFALAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS--------------RF 107
                          ++R+ L+K       M+        S  +                 
Sbjct: 575  PPGATKTRTNEVFTQMRAVLEKMPSIEGLMQITGFSFVGSGENVGMGFIRLKPWQERQET 634

Query: 108  KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
             + +  ++     G+            +    +     +  Q+          +    ++
Sbjct: 635  ADQLIQQLNGMFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRNGLGHEALTQARNVVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +   +  +          +   +QL    D  +   +  +T+ +               
Sbjct: 695  GKAAQRQDVMVGVRPNGLENSPQLQLT--VDRVQGESMGLSTSDIYKAIQ---------- 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              +     +D        +V +    +   + +     + P    +              
Sbjct: 743  LMLAPTYVNDYFSEGRIKRVNMRADDMYRTSPDSLRNFYTPSSSATDVNGQPLMIPLSNV 802

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                   A     R      IN           G  + +   +LA+++            
Sbjct: 803  VKADWIYAAPSLDRYNGYSAINIV----GNTAPGTSSGQAMKVLASIVNDDLPHGFGIDW 858

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
               +    +  ++        V  + L +  +        +     + + ++ T+    L
Sbjct: 859  SGMSYQEIIAGNAATLLLVLSVVVVFLCLSALYE-SWSIPVAVLLIVPIGILGTIVFSML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G    L    G++  IGLA  + IL+ E    +    +++  +        +  I  ++
Sbjct: 918  RGLPNDLYFKIGLITVIGLAAKNAILIVEFAVAQRATGKTLREATIDAARLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +  ++  + L      G  A       +   +  +    +  +  + 
Sbjct: 978  LAFILGVLPLAISSGAGANARHSIGTGVIGGMTFATIFGVIFIPLLF 1024


>gi|307726118|ref|YP_003909331.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1003]
 gi|307586643|gb|ADN60040.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1003]
          Length = 1043

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/677 (10%), Positives = 189/677 (27%), Gaps = 41/677 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G +  +        + ++P   P               + +    
Sbjct: 8   RPVFANVIALIVMLLGAVALI-----NLPVAQYPPITPPT-------------VQVVAHF 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +    +  + + +           +        +T++FA     +     V  
Sbjct: 50  PGASAATVIDRVALPIETQVNGVENALYMQSTSTNDGTYTLTVTFAVGTDVDKAQVLVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L    ++  +         + L           ++  S   +    D +   
Sbjct: 110 RVSAATAQLPQAVQQQGVTVRKRSTAILQLYTLQSPDPKYDSLFLSNYAVIYLRDTLARL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +   + A +       +        G        
Sbjct: 170 PGVGDVTVFGTGQYSMRVWLDPQKLSERNLSAADVMQAIQSQSKDVSAGQLGSEPNAGGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V  +  +S            P+    ++  +    G          +     +  
Sbjct: 230 AFQLTVSMRGALS-----------TPREFDDIIVKADSNDGGHFVRIRDVGHTELGSSSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +            A L           +          
Sbjct: 279 SQFFNLDGKPAAGIAIYQLPEANALEVGNAVKATMARLAKDMPKGVTYQLPFDTTTFVRQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T    A LVL V+ + +   +  LV   +I + +I T   + ++G ++ L ++
Sbjct: 339 SVIDVYKTLFEAALLVLAVILLFLQNWRAMLVPATTIPVTIIGTFGAIYMMGFSINLLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             IVL IG+ VD  I+V E I +   + ++   +           I    +  +   +  
Sbjct: 399 FAIVLAIGIVVDDAIVVVEGITQHIEQGKTPKQAAIDAMHELLGPIVGITLVLVSVFLPS 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLSR 530
            F G   G   R FA+ +  + +IS   A+++     +  +R+++             + 
Sbjct: 459 AFLGGVTGQMYRQFALVVVATTVISAINAVTLKPVQSVRWLRHQRPGKPNVVYRGFDRAY 518

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +    +++         + + I   + +        +             ++A +  D
Sbjct: 519 ARVEKGYVSVVSWFVARCKLALVIALVLGAASAYLLTRVPTSFIPLEDQGYMLIAAQIAD 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +R   E+    +       G  + +      P D+ A      ++   + +      
Sbjct: 579 AASLRRTREASTEIEKRIGAIPGVSHVVSIGGISPLDNNASLANAALIYVTLDDWSKRGK 638

Query: 651 IQNTEIVGPKISRELIR 667
            ++   +  +++ EL +
Sbjct: 639 GEDLRSLYLRMNSELAK 655



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 60/169 (35%), Gaps = 7/169 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                    +  + +   +  +++ W   +  +  + L +  T G  AL G   NL     
Sbjct: 870  NSAYWVFAVGVLLVFCVLAAQYESWLLPVAVVLAVPLALLGTAGTLALLGAANNLYTQIG 929

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LI  S  + +++ +  R    L    +       ++        + TS A  + V+P
Sbjct: 930  LVLLIALSAKNAILIVEFAR---HLRLQGVDIPQAAIEAARLRFRPIMMTSFAFILGVVP 986

Query: 786  MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +  G+      S  I +  G++ +   ++       + +     + A
Sbjct: 987  LVIATGASASARRSLGIAVFSGMLASTCIAVLFIPSFYVLLQRIAERQA 1035


>gi|269963503|ref|ZP_06177828.1| Preprotein translocase subunit SecF [Vibrio harveyi 1DA3]
 gi|269831678|gb|EEZ85812.1| Preprotein translocase subunit SecF [Vibrio harveyi 1DA3]
          Length = 300

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 145/284 (51%), Gaps = 6/284 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              + R++   +S++ +I ++  L   GLN G+DF GG+   V  ++ +    + + L+ 
Sbjct: 8   NIRKIRYFTTVVSVILTIIALVALGMKGLNLGLDFTGGMVTEVKVDKQLTNHDLLNALQP 67

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 S      +  +++R         A+ + L  V   +  I     + +  IVG +
Sbjct: 68  KLGESTSVTRSGEDGRWVIRYSAP-----AEGQTLPSVADVLKPISHQVDVVSNSIVGAQ 122

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           + ++L  +G + +++S + +L Y+  RF+W  A G++  L  D+   LGFFA+  +EFNL
Sbjct: 123 VGQDLFDQGGLALLVSVLTILGYLCFRFEWRLASGSLFALAHDVILVLGFFAITQMEFNL 182

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T  AA+L ++GYS+ND +++ DR+R+ + +   S     + D+++  T  R++ TS    
Sbjct: 183 TVFAAILAILGYSLNDSIIIADRIRE-LLVAKQSWKTEQINDEAVLATFSRTMVTSGTTL 241

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           I+V  + + GGS +  F+  M  G++    SSI I   +  ++ 
Sbjct: 242 ITVGALWIMGGSALAGFSTAMFIGVLSGTWSSISIGTVLPEWLK 285


>gi|110678893|ref|YP_681900.1| RND multidrug efflux transporter MexF [Roseobacter denitrificans
           OCh 114]
 gi|109455009|gb|ABG31214.1| RND multidrug efflux transporter MexF [Roseobacter denitrificans
           OCh 114]
          Length = 1063

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/611 (12%), Positives = 178/611 (29%), Gaps = 39/611 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  ++  +G+L        Q  ++++P   P               +V+  + 
Sbjct: 24  RPIFAIVMSVIMTIVGMLA-----YTQLPIEQYPQIAPP-------------SIVVRANY 65

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   EG+   S          +T++F      +     V  
Sbjct: 66  PGADAETIAATVATPLEQEINGVEGMLYLSSFSTADGSMSLTITFELGTDLDAAQVLVQN 125

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + +   + TT      +++            +  S     +  D++   
Sbjct: 126 RVAIAEPRLPQEVRALGVTTTKSSPDLMMVVHMLSPDETFDQLYVSNYARARVRDRLVRL 185

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L             DP RL  L  T A +       N    G   G      + 
Sbjct: 186 DGVGDLLIFGEREFSARVWLDPDRLSSLSLTAADVVDALREQNVQVSGGALGAPPNDMNS 245

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  +                 +    I       R         +       
Sbjct: 246 AFQVTITTQGRL-------------ESPREFGRVIVKASEDGRVVRVRDVARVEIGARSY 292

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           ++   L            +   +   + +    +   L           V          
Sbjct: 293 VNNSYLNNKPAVALGIFQRPGSNALASADEIIAVMDELAEDFPRGLEYQVVYNPTEFIAA 352

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV++V+ + +   +  ++   +I +++I T A++  LG TL L ++
Sbjct: 353 SVNAVYRTLFEAVLLVVVVILVFLQSWRTAIIPLLAIPVSLIGTFAVMFALGYTLNLLTL 412

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G++L IG+ VD  I+V E +    +   +   +         S I  +++  +   V  
Sbjct: 413 FGLILAIGIVVDDAIVVVENVERNIKNGMTPRQASARTMDEVQSAIIGTSLVLIAVFVPA 472

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
                  G   + FA+T+ ++ +IS   ++S+  A+   I+R                 +
Sbjct: 473 ALVPGITGQFYKQFAVTISVATVISTINSLSLSPALAASILRPHSETPSRNPLTLLTQPL 532

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  F +     V I  +       L  +     G+          +    +  +  
Sbjct: 533 ARGFNRGFDKLTAGYVAIVSVLVRSYRMLALSFVAFAGLLGTTYWLSQQVPTGFIPDADQ 592

Query: 595 RSNLESLQIGD 605
              +  +Q+ D
Sbjct: 593 GYAIVVVQLPD 603



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 51/139 (36%), Gaps = 5/139 (3%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L      G++ N+     ++ L+G +  + +++ +  +   
Sbjct: 917  SWALPVAIILVVPLAVLGALAGVMYRGMDNNILTQVGLIVLVGLAAKNAILIVEFAK--Q 974

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                   S  +   ++    L   + T++A  + V+P+ +    G  +  +    + FG+
Sbjct: 975  AHEERGCSAVEAAVEASKLRLRPILMTALAFILGVVPLMIATGPGSEMRQALGTAVFFGM 1034

Query: 806  VVAASSSIFIAAPILLFIY 824
                   +F      + I 
Sbjct: 1035 SGVTFLGLFFTPVFYVAIR 1053



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L AI    + +  T       G   NL  +  ++  IG  V+D +VV + + +N+K   
Sbjct: 385 PLLAI---PVSLIGTFAVMFALGYTLNLLTLFGLILAIGIVVDDAIVVVENVERNIK--- 438

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             ++ R    ++++E     + TS+      +P A+     G     FA+ ++   V++ 
Sbjct: 439 NGMTPRQASARTMDEVQSAIIGTSLVLIAVFVPAALVPGITGQFYKQFAVTISVATVIST 498

Query: 810 SSSIFIAAPILLFIYD 825
            +S+ ++  +   I  
Sbjct: 499 INSLSLSPALAASILR 514


>gi|289665104|ref|ZP_06486685.1| RND superfamily protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1041

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/678 (11%), Positives = 185/678 (27%), Gaps = 43/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P               +      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  SR  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDALAGIEGISTIEARSRNGSSDISIEFVQSRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARPPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARQLTVADVEAALQNENVELPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLNKGEGGYVVRLGDVARVELTSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +       A   A  ++          V          +    
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVAREARAQAEEVQKSLPQGTNIFVAFDTTTFIDAAVERV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LVL+V+++ +   +  L+   ++ + +I +   L     ++ L ++  +VL
Sbjct: 335 YHTLVEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIASFIALYAFDFSINLLTLLALVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E I+      +    +   G  +    +  +    +   + + F  G
Sbjct: 395 CIGLVVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP---- 535
                 R  A+ +  ++ IS F A+++   M   ++R  +    +         +     
Sbjct: 455 NTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRSHRQAKPNRFHQWFDGRMQAVSG 514

Query: 536 -DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +++    R W   + +L ++ +   L     +     +      ++ + P      
Sbjct: 515 AYGRSLERHVHRTWIFALLMLLALGASAWLMGRIPSELAPAEDRGNFQIMIDGPEGAGFD 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +  +  Q+  I       +K  +      PG   +   +         +     +   T
Sbjct: 575 YTVGQMHQVEAILRPYVGPDKPIVRANPRVPGGFGSSEEMHTGRVSVYLQDWQKRSRPTT 634

Query: 655 EIVGPKISRELIRKGIVG 672
           E+      +  +  G+  
Sbjct: 635 EVADEVQQKLNVLSGVRA 652



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 859  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     S    I +S +  L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDEGRSVHAAIVESASVRLRPILMTSIATVVGAIPLVV 975

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GG       +  + + FG+ ++   S+++       I  +      +
Sbjct: 976  AGGPGSASRATIGVVVIFGVSLSTLLSLYVVPAFYSLIAPYTKSPEAV 1023



 Score = 42.8 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL    T+ + +  +      F    NL  + A++  IG  V+D +VV + +    + 
Sbjct: 357 RAALIPAVTVPVCLIASFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENI---QRR 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                       +   +     + T+       LP+    G+    F
Sbjct: 414 IDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEGNTGRLF 460


>gi|254509469|ref|ZP_05121536.1| RND transporter, HAE1 family [Rhodobacteraceae bacterium KLH11]
 gi|221533180|gb|EEE36168.1| RND transporter, HAE1 family [Rhodobacteraceae bacterium KLH11]
          Length = 1045

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/623 (11%), Positives = 163/623 (26%), Gaps = 38/623 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++  +G +           + +FP   P                      
Sbjct: 9   RPKLALVISLVLTILGGI-----GYLVLPVAQFPDITPPVV---------SVTTTYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +   + +        +     +  + ++F      +  +  V   +  
Sbjct: 55  AETVENTVAAPIEAQVNGVDDMIYMTSTSSDNGSYSLNVTFEVGTDPDIASVNVQNRVAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +   + +VT       ++L           ++  S        D +   +   
Sbjct: 115 AMASLPSEVTSSGVVTQKASTNMLLLVTLTSPNGTYDSVFLSNYASINLKDALARVQGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    DP ++  L  T   +       N        G   + +    QY
Sbjct: 175 KADVLTNLEYAMRIWMDPDKMAALSITPGDVINAIREQNIEVSAGSIGAPPVPEGQTFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  ++                +    +                             
Sbjct: 235 TIKSKGRLTSAE-------------EFGDIVIRTGDAGAIVRVRDIARTELGAEFYAASG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +              +     E        L           V          S + 
Sbjct: 282 YFQSVPATVLGIYQAPGANALAVSERVQAELERLSRSFPTDVEYDVPFNTTDFVEQSLND 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV+ V+F+ +   +  ++   +I +++I T A L   G +L   S+  +V
Sbjct: 342 VVSTLILTFILVITVVFIFLGSWRATIIPAVAIPVSLIGTFAFLLAFGMSLNTISLFALV 401

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +  + +  L   V + F 
Sbjct: 402 LAIGIVVDDAIVVVENVERIIADEGLPPAEATRKAMGQITGPVIATTLVLLAVFVPVTFM 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIF-IIRYKKMKSIDINPLSRFFLIPD 536
            G + R    FA+T+  +++IS   A+++  A+    +          +     F     
Sbjct: 462 PGISGRLYSQFAVTISTAVVISSINALTLSPALCGLVLKPRSGPPKGLLAMFETFIGGMR 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-----KGGIQLGVLANRPVDL 591
              +  +R       +S+           T   N    F      G + + V       L
Sbjct: 522 SGYVAIVRKLLILPVVSLGIIAAFAMGTGTIMGNTSKGFIPLEDNGYLFVDVQLPDAATL 581

Query: 592 SVVRSNLESLQIGDISFQNFDGE 614
               +    +             
Sbjct: 582 ERTETVTARIDEQIQQIPGVSST 604



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 74/199 (37%), Gaps = 9/199 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +     E                  ++L   G+V VI+    +  Y+++      W  
Sbjct: 834  DAINVMTEESANALPPGYAFEWTGTAQQQLASGGLVVVILGLAILFGYLFLVGQYESWTM 893

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  + ++ + +   +   A+ G + NL     ++ L+G +  + +++ +   +      
Sbjct: 894  PVSILMSVTVALFGAVAAVAIVGSDINLYTQIGMIMLVGLASKNGILIVEFAMEQRA--- 950

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA 809
              +S ++   ++  +     + T+++  + V+P+    G+      +  + +  G++ A 
Sbjct: 951  NGLSIKEAAAEAAYQRFRAVMMTALSFLLGVVPLLAANGAGAASQKAIGVAVFGGMLAAT 1010

Query: 810  SSSIFIAAPILLFIYDWRA 828
               + +   +   +   R 
Sbjct: 1011 LFGVILVPVLYAVMQSLRE 1029



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 92/240 (38%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V +  +       +    S          L   Q    +++A +  ++   ++++
Sbjct: 257 DAGAIVRVRDIARTELGAEFYAASGYFQSVPATVLGIYQAPGANALAVSERVQAELERLS 316

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P     +          + +   +  +I++ I ++  ++I    W   +     + +
Sbjct: 317 RSFPTDVEYDVPFNTTDFVEQSLNDVVSTLILTFILVITVVFIFLGSWRATIIPAVAIPV 376

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T  F   FG+  N  ++ A++  IG  V+D +VV + +     +    +   +   
Sbjct: 377 SLIGTFAFLLAFGMSLNTISLFALVLAIGIVVDDAIVVVENV--ERIIADEGLPPAEATR 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
           K++ +  G  + T++      +P+    G        FA+ ++  +V+++ +++ ++  +
Sbjct: 435 KAMGQITGPVIATTLVLLAVFVPVTFMPGISGRLYSQFAVTISTAVVISSINALTLSPAL 494


>gi|332970455|gb|EGK09447.1| multiple transferable resistance system protein MtrD [Kingella
           kingae ATCC 23330]
          Length = 1055

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/686 (11%), Positives = 182/686 (26%), Gaps = 50/686 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++      + +  + ++PS                  + L    
Sbjct: 8   RPIFAWVIAIFIMLAGVI-----GISKLPISQYPSVAAPT-------------ITLTATY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  L+     +       ++       S        ITL+F      +     V  
Sbjct: 50  PGASAQVLEDSVLAIIERNMYGVEGLDYMSTSATSSGQGSITLTFTPDTNPDLAQVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  VNS+L    ++N +  +  +   +++     D    +  E +    R  I ++   
Sbjct: 110 KLSEVNSQLPSIVQQNGVNVSKARSNFLMVVMLTSD--TRNTEEIADYAQRNVIPELQRI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L+    + A +S      N        G +      
Sbjct: 168 DGVGNVNLFGAQR-AMRVWVDPAKLKSYGLSFADVSSAISAQNAQLAIGSLGAQPANVGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    ++                 +    +          +      I       
Sbjct: 227 TISATITADGQL-------------KTAEEFGAIMLKSNATGANVYLRDVAKIELGSQSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          S     +   T        A L          +           
Sbjct: 274 GSTSRLNGKPTTGMAVSLSTTGNAMATATAVRAKMAELEEFFPSGVTWVAPYDTSKFVEL 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + ++++   A +S LG ++ + ++
Sbjct: 334 SIKKVVSTLFEAIALVFLVMFLFLQNFRYTLIPTIVVPISLLGAFAAISYLGMSINVMTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +      +    +       +   V 
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMAEEGLSPRQATKKAMRQISGAVIGITAVLISVFVP 453

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L  F    G   R FA+TM  +I  S F A+S+  A+         +K I          
Sbjct: 454 LAMFSGATGNIYRQFALTMAFAIGFSAFLALSLTPALCAT-----MLKPIAKGHNHAKTG 508

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  +F        G        +  ++  +            +L        D   
Sbjct: 509 FFGWFNRKFNSGTRTYSGWIATTLRKAGVMVVIYLAIIAGAAVLIKRLPTAFLPNEDQGF 568

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +  +++          +        +       +++                +  + +++
Sbjct: 569 IMMSMQLPAGATQERTDASLATATQIITNMPEVENLITVSGFSFSGNGQNMAMGFAMLKD 628

Query: 654 TEIVGP--KISRELIRKGIVGVIISA 677
                     +  L  K    ++ + 
Sbjct: 629 WSERTAPGSDANSLANKITGALMGTL 654



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 88/236 (37%), Gaps = 6/236 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       Q    + +        +       G+++A    +     ++ E  P
Sbjct: 257 NVYLRDVAKIELGSQSYGSTSRLNGKPTTGMAVSLSTTGNAMATATAVRAKMAELEEFFP 316

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                       K     I+K +  +  +   + + +++  + + + L     + + +  
Sbjct: 317 SGVTWVAPYDTSKFVELSIKKVVSTLFEAIALVFLVMFLFLQNFRYTLIPTIVVPISLLG 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                +  G+  N+  + A++ +IG  V+D +VV + +     +    +S R    K++ 
Sbjct: 377 AFAAISYLGMSINVMTMFAMVLVIGIVVDDAIVVVENV--ERIMAEEGLSPRQATKKAMR 434

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +  G  +  +       +P+A++ G+       FA+ MAF I  +A  ++ +   +
Sbjct: 435 QISGAVIGITAVLISVFVPLAMFSGATGNIYRQFALTMAFAIGFSAFLALSLTPAL 490



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      I  + L I        +     ++     ++T++G S  + +++ +  +   
Sbjct: 891  SWSIPFAVILVVPLGILGVGAGALIRSYGNDIYFTIGMITVMGLSAKNAILIIEFAKD-- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGI 805
             L  T  +  +   ++        + TS A  + V+P+ +  G+      +    + +G+
Sbjct: 949  -LQETGKTAAESALRAAKLRFRPILMTSFAFILGVVPLYIATGASAASQRAIGTSVFWGM 1007

Query: 806  VVAASSSIFIAAPILLFIYD 825
            ++    S+F+     + +  
Sbjct: 1008 LIGTILSVFLVPMFYVMVRK 1027


>gi|269795062|ref|YP_003314517.1| protein translocase subunit secF [Sanguibacter keddieii DSM 10542]
 gi|269097247|gb|ACZ21683.1| protein translocase subunit secF [Sanguibacter keddieii DSM 10542]
          Length = 371

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/310 (21%), Positives = 131/310 (42%), Gaps = 13/310 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     +   +  R      S++  + S+ +L T G N GI+F+GG +  V  
Sbjct: 5   FAQWGNDLYTGRKSYDIVGKRRKFYIASVVIVLLSLVVLLTRGFNLGIEFRGGSEFTVSD 64

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              +        + S+   +    +  G     V+      D      V+ +        
Sbjct: 65  VSTLSQQEALDAVASVAPAEQPRISSVGSSALRVQTAALDED-----EVVAVRDALAAAY 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
              +    +  +GP    ++  K + G+++  + + + + + F+ W  A  A+  L  D+
Sbjct: 120 GVSADEVTSSFIGPSWGADVSGKALTGLVVFLVLVTLVMSVYFRAWRMAAAALVALFHDL 179

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLID 762
             T G +AL G E     V   LT++GYS+ D VVV+D++R+N    T     ++ +  +
Sbjct: 180 IITAGVYALIGWEVTPATVIGFLTILGYSIYDTVVVFDKVRENTADITKQTRSTYAERAN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            ++N+TL RS+ TS+ A + V  +      + G   +   A+ +  G+ V   SSIF+A 
Sbjct: 240 LAVNQTLVRSINTSVVALLPVASILFIGAFILGAGTLRDIALALFVGMAVGTYSSIFLAT 299

Query: 818 PILLFIYDWR 827
           P+ + +    
Sbjct: 300 PLEVTLRMRE 309


>gi|37523736|ref|NP_927113.1| preprotein translocase subunit SecF [Gloeobacter violaceus PCC
           7421]
 gi|35214741|dbj|BAC92108.1| protein-export membrane protein [Gloeobacter violaceus PCC 7421]
          Length = 308

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/261 (29%), Positives = 140/261 (53%), Gaps = 12/261 (4%)

Query: 572 GIDFKGGIQLGVLANRPV-DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           G+DF GG  L +   + + D++ VR+ +      +   Q    +                
Sbjct: 41  GLDFTGGTLLQLKFVKAIPDIAKVRAEVGEAGYPNSVVQQIGSDT-------IAVRTRPL 93

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
                  ++  +   +    ++  E VGP + +EL+  G++ + ++  A+L+Y+  RF+ 
Sbjct: 94  SQPERSKLQDALKADLGNFQLERIESVGPTLGQELLFNGLLSLALALAAILVYLAFRFQL 153

Query: 691 YFALGAITTLILDITKTLGFFA----LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            +A+ A   +  ++  T+G FA    L GIE +   V A+LT++G+SV D VVV+DR+R+
Sbjct: 154 DYAICAAVAMFHNVIATMGVFAILGLLLGIEVDTLFVVAILTIVGFSVQDTVVVFDRVRE 213

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
           N+K  +    F D+++ S+N+T  RSV  ++AA + +LP++++GG  I  FA+ +  G V
Sbjct: 214 NLKFLSRKKPFPDIVNDSVNQTWVRSVNNNIAALLVLLPLSIFGGESIRYFALALIIGFV 273

Query: 807 VAASSSIFIAAPILLFIYDWR 827
           V   SSIFIAA +L++  + +
Sbjct: 274 VGTYSSIFIAAALLVWWRERQ 294


>gi|306840832|ref|ZP_07473579.1| hydrophobe/amphiphile efflux-1 family transporter [Brucella sp.
           BO2]
 gi|306289227|gb|EFM60476.1| hydrophobe/amphiphile efflux-1 family transporter [Brucella sp.
           BO2]
          Length = 1074

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/548 (11%), Positives = 153/548 (27%), Gaps = 40/548 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I   GL+        +  + +FP  +P               + +   
Sbjct: 8   KRPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTAT 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++      + + +     +   S     N    +T++F            V 
Sbjct: 50  YPGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++   + L  +  +  +    +    + +            +  +   +   +D++  
Sbjct: 110 NRVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q          +    +   L  L  T   +       N        G   + D 
Sbjct: 170 VPGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAVSSQNVQAAVGRLGAPPMTDQ 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +  +  ++                +    I                 +      
Sbjct: 230 QQIQLTLTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQS 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L     +          +     E    +   L+          +         
Sbjct: 277 YDTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVS 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S
Sbjct: 337 STIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTIS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  ++L IG+ VD  I+V E +             +         + I    +  L   V
Sbjct: 397 LFAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFV 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   
Sbjct: 457 PVAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDK 516

Query: 533 LIPDCIAI 540
           L      I
Sbjct: 517 LSSGIEKI 524



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQLSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|227823325|ref|YP_002827297.1| RND multidrug efflux transporter MexF [Sinorhizobium fredii NGR234]
 gi|227342326|gb|ACP26544.1| RND multidrug efflux transporter MexF [Sinorhizobium fredii NGR234]
          Length = 1058

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/699 (11%), Positives = 182/699 (26%), Gaps = 59/699 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  +G +        Q  + ++P   P               +V+    
Sbjct: 10  RPIFASVLSIVLLIVGGIA-----YFQLPVAQYPEIAPPT-------------IVVRASY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S          +T++F      +     V  
Sbjct: 52  PGADAETVANTVATPLEQEINGVENMLYMSSYSTADGSMSLTITFKLGTDLDQAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  D ++  + TT      +++            +  S     +  D +   
Sbjct: 112 RVSIAEPRLPEDVRRIGVTTTKSSPDLMMVVHLLSPNDRYDQLYVSNYARTRIRDLLVRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     +        L    DP +L     T+  +       N    G   G   +    
Sbjct: 172 DGVGDVILFGEREYALRVWLDPQKLSAYGMTSGDVVEALRQQNVQVSGGSIGGPPMSGDT 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY V      S                     I       R         +       
Sbjct: 232 AFQYTVTTDGRFSDARQFRY-------------VIVKATQDGRLVQLQDVARVELGAREY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L            +   +     +        L         + +          
Sbjct: 279 VTNSYLNGSPAVALGIFSRPGTNALAAADAIQATMTDLAKDFPEGLEHRIIYNPTEFISE 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+ + +   +  ++   +I +++I T ALL   G +L + ++
Sbjct: 339 SIDEVYMTIGEAVILVALVVIVFLQSWRTAIIPIVAIPVSLIGTFALLFAFGFSLNMLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  +   +  +      + +   ++      V  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNLARGMTPREAAHVTMDEVGAAVIAISLVLTAVFVPT 458

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMK 521
            F  G + +    FA+T+ ++ +IS   ++++  A+   +                +  +
Sbjct: 459 AFIPGISGQFYLQFAVTIAVATVISAINSLTLSPALAAILLRPHDDHEHESRNPVTRFGR 518

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-------GID 574
           ++     + F  + D  A    R     V +     +    L  T  +            
Sbjct: 519 ALANGFNNGFDRMADGYAWTVRRLVQTRVALVAALVVFVALLGATWYMAQVVPRGFIPTM 578

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +G   + +       L    + ++                 F         ++     +
Sbjct: 579 DQGYAIVVIQLPDGASLERTDAVVQRASAMIREVPGVRDAVAFAGFNGATFTNASNSGVI 638

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                     +                 + +    I+ V
Sbjct: 639 FTPFDSFEERLEHGQNATQIIGQLFGAMQSIQEAFIIAV 677



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 672  GVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              I +   + +++ +      W   L  I  + L +   L   +L G++ N+     ++ 
Sbjct: 885  AFIFALSVIFVFLALAAQYESWVLPLAIILIVPLAVLAALLGVSLRGMDNNVLTQIGLIV 944

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG +  + +++ +  R   +      +  +   ++    L   + T+ A  + V+P+ +
Sbjct: 945  LIGLAAKNAILIVEFAR---QGEEEGKTPIEAAIEASRLRLRPILMTAFAFILGVVPLVI 1001

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G  +  S    +  G++      +F+     + +   R K A +
Sbjct: 1002 ATGPGAEMRQSLGTAVFSGMLGVTFLGLFLTPVFYVTLRSLRRKPAAL 1049



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  A+  I  + + +  T      FG   N+  +  ++  IG  V+D +VV + + +N+
Sbjct: 364 SWRTAIIPIVAIPVSLIGTFALLFAFGFSLNMLTLFGLVLAIGIVVDDAIVVVENVERNL 423

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSM--AAFISVLPMAV-WGGSVIGSFAIPMAFGI 805
                 ++ R+    +++E     +  S+   A            G     FA+ +A   
Sbjct: 424 A---RGMTPREAAHVTMDEVGAAVIAISLVLTAVFVPTAFIPGISGQFYLQFAVTIAVAT 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAINSLTLSPALAAILLR 500


>gi|167738647|ref|ZP_02411421.1| multidrug efflux protein [Burkholderia pseudomallei 14]
          Length = 961

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/622 (11%), Positives = 171/622 (27%), Gaps = 41/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+            + ++P   P   +SL        +       
Sbjct: 8   RPVFAWVISLFIMLGGIFAI-----RALPVAQYPDIAPP-VVSL--------YATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +        +    Q  ++L+F      +  A  V   L+ V
Sbjct: 54  AQVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      + + ++     +      +E         +  +   E   +
Sbjct: 114 EARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASANVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     ++                                +      I            
Sbjct: 233 VLADAPLT-------------TPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSF 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L     P     +          S S  
Sbjct: 280 VNGKTATGMGIKLAPGSNAVATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+F+ +   +  L+    + + ++ T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLVEAGVLVFAVMFLFMQNFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529
              G   R FA  + +SI  S F A+S+  A+   +++                +     
Sbjct: 460 GAVGNIYRQFAFALAVSIGFSAFLALSLTPALCATLLKPVADDHHEKDGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R   W V    L +  ++ +          + +G   + V+  +  
Sbjct: 520 STHRYTRRVGRVLERPLRWLVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNF 611
            L+    ++  ++    +    
Sbjct: 580 PLAETMQSVRRVEEYVRTHSPS 601



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 71/203 (34%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +E + K     V       T         +++   +   ++    M +++ 
Sbjct: 300 ATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +   +   K++ +  G  V  ++      +PMA +GG+V      FA  +A
Sbjct: 416 -ERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497


>gi|225025203|ref|ZP_03714395.1| hypothetical protein EIKCOROL_02100 [Eikenella corrodens ATCC
           23834]
 gi|224941961|gb|EEG23170.1| hypothetical protein EIKCOROL_02100 [Eikenella corrodens ATCC
           23834]
          Length = 1082

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/687 (11%), Positives = 181/687 (26%), Gaps = 53/687 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L        +  + ++PS                    L    
Sbjct: 8   RPVFAWVISIFIILAGVLAI-----QKLPVSQYPSVAAPT-------------FNLTATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   +       +TL+F     ++    +V  
Sbjct: 50  PGASAQVMEDSVLAVIERNMNGVEGLDYMSTSANSSGSGSVTLTFTTDTDEDVAQLEVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V S L    ++  +  +  +   +++   +         E +    R  + ++   
Sbjct: 110 KLNEVLSSLPATVQQYGVNVSKSRSNFLMVVALSSQ--TQDLEEMADYAKRNIVPELQRV 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP +L+    + A +S      N        G        
Sbjct: 168 EGVGAVRLF-AAERAMRIWVDPQKLQNFNLSFADVSAAISAQNVQISVGSLGSLPSVQGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    ++S                +    I          +      I       
Sbjct: 227 TISATITANGQLS-------------TPEEFGNIILRSTTDGANVYLRDVAKIELGSEDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T        A L                      
Sbjct: 274 SASTRLNGKPTVGMAVMLSNSGNATATATLVKERMAKLEQYFPGDVTWSAPYDTSTFVEI 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   ++ L+    + ++++   A +   G ++ + ++
Sbjct: 334 SIEQVVHTLVEAMVLVFIVMFVFLQNIRYTLIPTIVVPISLLGGFAGIYYFGMSINVLTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    +       +   V 
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMSEEGLPPREATHKAMGQISGAVVGITAVLISVFVP 453

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           L  F    G   + FAITM LSI  S F A+S+  A+   +           +       
Sbjct: 454 LAMFSGATGKIYQQFAITMVLSIAFSAFLALSLTPALCASLLKPIEKGHHEEKTGFFGWF 513

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    +        +A+   RA    +    L +   +            + +G + + +
Sbjct: 514 NRKFTAGNKRYEGWVAVILHRAGRMLIVYLALVAAAGLLYTRIPSSFLPSEDQGNLMVSI 573

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L +++                       G ++A   V+     +  
Sbjct: 574 QLPAGATKERTDQTLLAVEQIAKGTPGVKDVFTVSGFSFSGSGQNMAMGFVILKNWDERK 633

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGI 670
                +   + ++ G  ++  +IR G 
Sbjct: 634 GPGEDAASISQKLTGTFMASGMIRDGF 660



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 90/246 (36%), Gaps = 6/246 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +    S +        +  +    G++ A   +++    K+ +  P
Sbjct: 257 NVYLRDVAKIELGSEDYSASTRLNGKPTVGMAVMLSNSGNATATATLVKERMAKLEQYFP 316

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                +            I + +  ++ + + + I +++  +   + L     + + +  
Sbjct: 317 GDVTWSAPYDTSTFVEISIEQVVHTLVEAMVLVFIVMFVFLQNIRYTLIPTIVVPISLLG 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                  FG+  N+  + A++ +IG  V+D +VV + +     +    +  R+   K++ 
Sbjct: 377 GFAGIYYFGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMSEEGLPPREATHKAMG 434

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  V  +       +P+A++ G+       FAI M   I  +A  ++ +   +   +
Sbjct: 435 QISGAVVGITAVLISVFVPLAMFSGATGKIYQQFAITMVLSIAFSAFLALSLTPALCASL 494

Query: 824 YDWRAK 829
                K
Sbjct: 495 LKPIEK 500



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 18/274 (6%)

Query: 571  YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                 +    L +       ++V  S + S        Q+        + +        A
Sbjct: 773  PQARMQAEQILAMTVPNGQGVAVPLSTVVSASWEAGMEQSTRFNGYPAMSISGAVKPGFA 832

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
                +  V++ ++++   S     E                 V+++   +L  ++  +  
Sbjct: 833  SGDAMAEVERIVSQMDGYSVEWAGESRQQASGSSQRTMLYGFVLLATFLVLAALYESWSI 892

Query: 691  YFALGAITTLILDITKTLGFFA--LFGIEF--------NLTAVAAVLTLIGYSVNDKVVV 740
              A+  +  L   +   LG F   LF   F        ++  +  ++T++G S  + +++
Sbjct: 893  PAAVLLVAPLGF-LGVVLGVFGRNLFNGVFHIREVFFNDIYFMVGMITVVGLSAKNAILI 951

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSF 797
             +  +    L     S  +    + +      + TS A  + V+P+ +  G+      + 
Sbjct: 952  IEFAKD---LQAQGKSAMESALAAAHLRFRPILMTSFAFILGVVPLYIASGASSASQRAI 1008

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               + +G+ V    S+F+  P+   +     K +
Sbjct: 1009 GTTVFWGMSVGTLLSVFLV-PLFYVLVRKLFKPS 1041


>gi|309781106|ref|ZP_07675844.1| multidrug efflux pump AmrB [Ralstonia sp. 5_7_47FAA]
 gi|308920172|gb|EFP65831.1| multidrug efflux pump AmrB [Ralstonia sp. 5_7_47FAA]
          Length = 1051

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/690 (11%), Positives = 188/690 (27%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L      LP+  + ++P+  P              ++ +  + 
Sbjct: 8   RPVFAWVIALAIILAGVLA-----LPKLPVAQYPNIAPP-------------NVSISANY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          I LSF      +  A +V  
Sbjct: 50  PGASARTVESAVTAIIEREMNGAPGLLYMSSSSDAAGNVSINLSFTQGTSPDLAAVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L    ++N +      E  ++      ++     I+         I Q+   
Sbjct: 110 RLKIVEERLPEVVRRNGIRIEKAAENYMMYLSLTAERGRFDGIDLGDLASSDLIPQLRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D  +L  L  T   +S      N        G   +  S 
Sbjct: 170 PGVGTAQLFDA-EYAMRIWPDADKLTALGLTAGDLSDAVRRYNARITVGEIGSGAVPGSA 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     ++                         +   R         +    +  
Sbjct: 229 PINASVTGDDGLT-------------TPDAFGQIPLRADAQGRMVLLRDVARVELGGSDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    +                +     +    +    +A   P     V   +      
Sbjct: 276 LYLSRMNGKPATTIGIKLAPGANAVGVAKRVRAVLDQAQARFPPGVRYEVAYDSSRFVGI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +V+ + +   +  L+    + + ++ T A++  +G ++ + ++
Sbjct: 336 AIEQVVKTLLEAVVLVFLVMMLFMQNLRATLIPTLVVPIALLGTFAVMLPMGFSINVLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    + +  S   +      +    I   ++      V 
Sbjct: 396 FGLVLAIGILVDDAIVVVENVERVMHEEGLSPREATAKAMRQISGAIVGISLVLTAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F++++ +S++ S F A+++  A+   +           R     + 
Sbjct: 456 MAFFGGAVGNIYRQFSLSLAVSMVFSAFLALTLTPALCATLLKPVQPDHGAERKGFFGAF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A+   R     V    +  +  +  +         +  G     V
Sbjct: 516 NRGFARLTARYRGGVAMLLNRTGRALVAYGAVIGVVVLLFMQLPTAFLPEEDTGEFMTVV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +       +     +          Q         +      G+      +   +K    
Sbjct: 576 MLPTGATQAQTLDVVRQA-EQYFMTQEPAVASTLAITGFSLYGNGQNAAMLFLTLKDWKQ 634

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                  +            ++    ++ +
Sbjct: 635 RKGAGQHVDAVVERANAAFGKIKGAMVMAM 664



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 84/242 (34%), Gaps = 6/242 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V              +        +        ++V   + +  V  +     P
Sbjct: 259 MVLLRDVARVELGGSDYLYLSRMNGKPATTIGIKLAPGANAVGVAKRVRAVLDQAQARFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                       +     I + +  ++ + + + + + +  +     L     + + +  
Sbjct: 319 PGVRYEVAYDSSRFVGIAIEQVVKTLLEAVVLVFLVMMLFMQNLRATLIPTLVVPIALLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T       G   N+  +  ++  IG  V+D +VV + +     ++   +S R+   K++ 
Sbjct: 379 TFAVMLPMGFSINVLTLFGLVLAIGILVDDAIVVVENV--ERVMHEEGLSPREATAKAMR 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  V  S+      +PMA +GG+V      F++ +A  +V +A  ++ +   +   +
Sbjct: 437 QISGAIVGISLVLTAVFVPMAFFGGAVGNIYRQFSLSLAVSMVFSAFLALTLTPALCATL 496

Query: 824 YD 825
             
Sbjct: 497 LK 498



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 63/179 (35%), Gaps = 8/179 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
            E +    +    L      E  G     +L       +  +S + + + +   ++ W   
Sbjct: 836  EAMAAMESIARGLPAGFGYEWTGQSFEEQLSGAQAPALFALSILVVFLCLAALYESWSIP 895

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  +  + L +   L    L  +  ++     ++  IG S  + +++ +  +    L   
Sbjct: 896  LAVLLVVPLGVLGALLGATLRFLPNDIYFKVGLIATIGLSAKNAILIIEVAKD---LVAQ 952

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAA 809
             +   +   ++        V TS+A    V+P+A+  G   +   +    +  GI+ A 
Sbjct: 953  GMGLIEATLEAARLRFRPIVMTSLAFAFGVVPLALASGTASASQRAIGTGVLGGIIAAT 1011


>gi|237752860|ref|ZP_04583340.1| multidrug resistance protein mexb [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375127|gb|EEO25218.1| multidrug resistance protein mexb [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 1029

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 83/681 (12%), Positives = 208/681 (30%), Gaps = 44/681 (6%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           ++  +I   G L           ++ +P   P               +V++         
Sbjct: 2   VMSIIIVIAGSLSIF-----SLAVEEYPQVTPP-------------QVVVQATYPGASAE 43

Query: 69  FLQM-YSDELRSFLKK-EGIGVFS---MRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
            +    +  L + +   EG+              I + F +    +     V   +Q V 
Sbjct: 44  VISSGVASVLENSINGVEGMLYMQSSSTSSGALSINIYFTNETDPDQATINVNNRVQAVL 103

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S+L  + ++  +         + +   + D     A+  +       +D++         
Sbjct: 104 SQLPQEVQRMGVTVEKRSSTILAVYSLSSDTPSHDAVFIANYATINILDELKRIPGVGDA 163

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
               R    +     P +L +   T  ++       N+      FG   +R      Y V
Sbjct: 164 SLFSRSEYSMRIWLAPDKLTKYNLTPTEVIAAVQEQNSQFAVGAFGQEPIRKDLDFTYSV 223

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             +   +                +    +    +            +             
Sbjct: 224 TTQGRFTSTD-------------EFGEILIRTNLDGSSLRLKDVAKVSLGAEDYSVNAFY 270

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       +   +     E+       L           +          S     
Sbjct: 271 NGKPAVAFGVFLQPGANALNVAESVSAKLEELSKSFPDGLEYAIPYDTTAFVDVSVKEVI 330

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T      LV+IV++  +   +  ++   ++ +++I   A + +LG ++ L ++ G++L 
Sbjct: 331 KTFIEAIILVVIVIYFFLQNFRATIIPVLAVPVSIIGAFAGMYILGFSINLLTLFGLILA 390

Query: 424 IGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           IG+ VD  I+V E +    + +  SV  +         S +    +      + + F G 
Sbjct: 391 IGIVVDDAIIVIENVERLIHEEKLSVKEATTKAMEEIASPVIAIVLVLSAVFIPVAFIGG 450

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI---NPLSRFFLIPD 536
             G   + FAIT+ +S++IS F A+++  A+ + +++ K+ K   I     +   +L   
Sbjct: 451 FAGEIYKQFAITIVISVIISGFVALTLTPALCVSLLKTKEPKPFWIVRKFNIFFDWLTHQ 510

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R   + + +   +  I       +  G+       + +++ +    + +  
Sbjct: 511 FTDKVAHAIRRGTLYVILFVGLIGITYGLFTRVPTGLVPSEDKGVLLISMKLPPATALSK 570

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +     + + +N    +  +    Y    S  +T       K     +     Q+++ 
Sbjct: 571 TTDVASFMEQTVRNHPDTEAIMALAGYDLLSSAVRTFGGAAFVKLKDWDLRKKDNQHSQA 630

Query: 657 VGPKISRELIRKGIVGVIISA 677
           +   ++ +L+R     +I + 
Sbjct: 631 IANTLTGQLMRN-PNAIIFAL 650



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 84/242 (34%), Gaps = 6/242 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +   ++                   +++     +    +++++  P     
Sbjct: 253 DVAKVSLGAEDYSVNAFYNGKPAVAFGVFLQPGANALNVAESVSAKLEELSKSFPDGLEY 312

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                        +++ I   I + I ++I I+   + +   +  +  + + I       
Sbjct: 313 AIPYDTTAFVDVSVKEVIKTFIEAIILVVIVIYFFLQNFRATIIPVLAVPVSIIGAFAGM 372

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG- 770
            + G   NL  +  ++  IG  V+D ++V + +     ++   +S ++   K++ E    
Sbjct: 373 YILGFSINLLTLFGLILAIGIVVDDAIIVIENV--ERLIHEEKLSVKEATTKAMEEIASP 430

Query: 771 --RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               V    A FI V  +  + G +   FAI +   ++++   ++ +   + + +   + 
Sbjct: 431 VIAIVLVLSAVFIPVAFIGGFAGEIYKQFAITIVISVIISGFVALTLTPALCVSLLKTKE 490

Query: 829 KN 830
             
Sbjct: 491 PK 492



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 59/166 (35%), Gaps = 6/166 (3%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              G +  +   + + + +  ++ +W   +  +T +   +   +    L G+  ++     
Sbjct: 855  NTGSLAFVFGLVFVFLILAAQYERWLMPMAVLTAVPFAVFGAIFATWLRGLNVDIYFNIG 914

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LI  +  + +++ +                D   ++        V TS+A  I VLP
Sbjct: 915  LVMLIALAAKNAILIIE--FAMQAREVEGKDIYDSAIEAARLRFRPIVMTSLAFTIGVLP 972

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +A+    G +   +    +  G++ A   + F       +   +  
Sbjct: 973  LAISTGAGAASRHAIGTGVIGGMLAATFIATFFIPLFYTYFARFSE 1018


>gi|206562781|ref|YP_002233544.1| multidrug efflux system transporter protein [Burkholderia
           cenocepacia J2315]
 gi|198038821|emb|CAR54783.1| multidrug efflux system transporter protein [Burkholderia
           cenocepacia J2315]
          Length = 1047

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/590 (10%), Positives = 150/590 (25%), Gaps = 41/590 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GL+       PQ  + R+PS  P               + +  +
Sbjct: 7   RRPVFAWVIALFIILTGLIAI-----PQLPVARYPSVAPP-------------SVTITAN 48

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +      +IT++F      E     V 
Sbjct: 49  YPGATPQTMNDGVLSLIERQLSGVKNLLYFESSADTSGSAQITVTFKPGTNPEMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V  +L    ++N L+  +     +++     D         +  + R   +++  
Sbjct: 109 NKIKSVEPRLPAAVRQNGLIVESASSGFLMIVSLRSDNGRFDEGALADYMARSVSEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   + L        +    DP +L     + + ++      N        G       
Sbjct: 169 IDGVGRVLQFGS-ERAMRIWVDPQKLINFGLSMSDLTTAIGQQNVQIAPGSLGALPALPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +        +        +      
Sbjct: 228 QRVTVPLTAQGQLATSE-------------EFAKVVLRANADGSKVVLGDVARVELGSQN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T +      A L           +         
Sbjct: 275 YTFVSRENNKPATLAGVQLAPGANAVKTADAIRARMAELSKSMPSGMSYSIPLDTSPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++ L G ++ + +
Sbjct: 335 ISIEKVLHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAMLGTFTVMLLTGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +           I    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMAEEGLSPKDATSKAMKEITGAIVGVTLVLTAVFL 454

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            +    G     +        +  +F+A+  +            M               
Sbjct: 455 PMAMASGSVGVIYKQFTLSMAVSILFSALLALTLTPALCAT---MLKPLAPGHHEKRGFF 511

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                +F R   W           +  ++       G    G   L    
Sbjct: 512 GWFNRRFDRLTKWYETRVGRLVGRTGRVMLVFVAISGALVLGFRSLPSSF 561



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 83/230 (36%), Gaps = 14/230 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q      +  +              ++V     +     ++++ +
Sbjct: 258 SKVVLGDVARVELGSQNYTFVSRENNKPATLAGVQLAPGANAVKTADAIRARMAELSKSM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +  +      +  I K +  ++ + + + + +++     R+    A+ A   + 
Sbjct: 318 PSGMSYSIPLDTSPFVKISIEKVLHTLLEAMVLVFLVMYLFLQNVRYTLIPAIVAPVAM- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T     L G   N+  +  ++  IG  V+D +VV + +     +    +S +D  
Sbjct: 377 ---LGTFTVMLLTGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAEEGLSPKDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
            K++ E  G  V  ++      LPMA+  GSV      F + MA  I+ +
Sbjct: 432 SKAMKEITGAIVGVTLVLTAVFLPMAMASGSVGVIYKQFTLSMAVSILFS 481



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 64/150 (42%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + +++S I + + +   ++ W   L  +  + L +   +G   L G+  ++     +
Sbjct: 865  QAPMLMVLSMIVVFLVLAALYESWSIPLSVMLVVPLGLIGAIGAVLLRGMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L        +   ++    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAK---QLREEGRGLIEAAVQASKLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             +  G       +    +  G+V A   +I
Sbjct: 982  MIATGASAETQHAIGTGVFGGMVTATVLAI 1011


>gi|162449899|ref|YP_001612266.1| RND family efflux transporter [Sorangium cellulosum 'So ce 56']
 gi|161160481|emb|CAN91786.1| RND family efflux transporter [Sorangium cellulosum 'So ce 56']
          Length = 1075

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/603 (10%), Positives = 167/603 (27%), Gaps = 45/603 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  ++  +G        + +     FP  +                 VL   
Sbjct: 10  RRPVFASVIVLLLTVLGAFSYFGLGVDRFPKVEFPFIV--------------VTTVLPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   L    +   + +        +  +  +++ +SF   +  +  A +V   ++G
Sbjct: 56  APEEVETELSDKIESAVNTISGIDELRSASVEGLSQVMISFQLEKDVDVAAQEVRDKVEG 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L       ++         I+    +  +        +    +    ++       
Sbjct: 116 ILADLPEGIDPPVVGKLDPDAAPILTLAVSSPKA--DVRSVTEFADKTLRRELESLAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L       Q+    DP +L +   T   ++      N                     
Sbjct: 174 QVLLIGGRSRQINIWIDPEKLEKYSLTGGVVAQALASQNVEIPAGRIEQ----------- 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G            ++ + + DI                 +   +A      
Sbjct: 223 ---------GGRALTLRTRGRVQSVQQMADIVLANRDGYSVRLGDVAEVQDGMAEPESAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +    I+      + +           +          S   
Sbjct: 274 FRGLDPAVLLSIRKQSGTNTVEVIDGLKARISEVEKRLPEGYSIAIARDQSEFIKNSVHA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K    + A L  I++ + +   +  L++  +I  ++I T AL+ + G TL   ++  + 
Sbjct: 334 VKEHLVLGAVLAAIIVALFLANARSTLISAIAIPTSIISTFALMKVAGFTLNGITLLALT 393

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L +G+ +D  I+V E        K  S + +   G       +  + ++ +   + + F 
Sbjct: 394 LAVGIVIDDAIVVLENCYRWIEEKGASPWEAALQGTKEIGPAVLATTLSLVAVFLPVAFM 453

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFF 532
               G  +  F +TM  SIL+S+  + ++   +    ++  +                  
Sbjct: 454 SGIVGRFLNSFGLTMAFSILVSLIVSFTLTPMLSARWLKKPEKHDAGSSKESRFYGPIER 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +           +   +      +           I+ +   Q+ + A   V L 
Sbjct: 514 GYMAILRWSMAHRWVIVLASLLALFSIPVLGGMAKFNFLPIEDESQFQVSMRAPEGVSLD 573

Query: 593 VVR 595
             R
Sbjct: 574 GTR 576



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 93/278 (33%), Gaps = 10/278 (3%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            ++ +   + +      I         V      ++    +  ES     +        +
Sbjct: 227 LTLRTRGRVQSVQQMADIVLANRDGYSVRLGDVAEVQDGMAEPESAGFRGLDPAVLLSIR 286

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
                   +  D       +  V+K++ E   ++  ++           +    ++G ++
Sbjct: 287 KQSGTNTVEVIDG--LKARISEVEKRLPEGYSIAIARDQSEFIKNSVHAVKEHLVLGAVL 344

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           +AI + +++        +  AI T    I  T     + G   N   + A+   +G  ++
Sbjct: 345 AAIIVALFLANARSTLISAIAIPT---SIISTFALMKVAGFTLNGITLLALTLAVGIVID 401

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-- 793
           D +VV +       +     S  +   +   E     + T+++     LP+A   G V  
Sbjct: 402 DAIVVLENC--YRWIEEKGASPWEAALQGTKEIGPAVLATTLSLVAVFLPVAFMSGIVGR 459

Query: 794 -IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            + SF + MAF I+V+   S  +   +         K+
Sbjct: 460 FLNSFGLTMAFSILVSLIVSFTLTPMLSARWLKKPEKH 497



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 77/195 (39%), Gaps = 7/195 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +   V L        +Q  V++ + K + E+   S      +   K   ++++  +V +
Sbjct: 800 NRQRQVMLTANLEAGYSQQTVIQELDKAVAEMNLASGYSAGPVGASKELIKMMKSFLVAL 859

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++S + M + +  +F+ W   +  + +L L +        +F    N+ ++  ++ L G 
Sbjct: 860 LLSLVFMYLVLAAQFESWLHPITILLSLPLTVPFAFIAVIIFRQSLNIFSLLGIVVLFGV 919

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
              + ++  D     +KL    +     I ++  + L   + T++A    ++P+ V    
Sbjct: 920 VKKNSILQIDH---TIKLREHGLPRAQAILEANRDRLRPILMTTLAFVAGMIPLVVSSGA 976

Query: 790 GGSVIGSFAIPMAFG 804
           G     +    +  G
Sbjct: 977 GSGTNRATGFVIIGG 991


>gi|160895613|ref|YP_001561195.1| hydrophobe/amphiphile efflux-1 family protein [Delftia acidovorans
           SPH-1]
 gi|160361197|gb|ABX32810.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Delftia
           acidovorans SPH-1]
          Length = 1064

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/548 (11%), Positives = 156/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  ++  +GL+       PQ  +  +P  +P + +                  
Sbjct: 10  RPIFAVVLSIILFAVGLVAI-----PQLPVGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   + +  +E  + ++             + ++  +F      +  A +V   +  
Sbjct: 56  PKEVAESVAVPLEEAINGVEGLMYMKSVAASDGSLQVVSTFRPDVDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            A+     +  +  D +       
Sbjct: 116 AQSRLPEEVRQFGVTTQKQSSTPLMYVGLVSQDGQHDALYLRNYVTLKIKDVLARIPGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T  ++       N        G +    S     
Sbjct: 176 DVGIYGAGDYAMRVWLDPDKVAARQLTAPEVIAAIREQNIQVSAGQLGAQPSPQSADKLL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +       +         I    +      
Sbjct: 236 SINVRGRL-------------KTPEEFGSIVLKGGADGQVVRLADVARIELGASDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +     E        L                      S   
Sbjct: 283 WSDKKNMAAVGIFLSPGANALGVAEQVYAAMDKLSQDLPEGVAFETVWDPTVFVRDSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ ++++ T A L LLG ++   ++ G+V
Sbjct: 343 VQSTLIEAVILVVLVVIVFLQTWRASIIPLLAVPVSIVGTFAGLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+ VD  I+V E +     +  +   +  +        I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERYIEEGHTPLEAAHLAMKEVSGPIIAIALVLCAVFVPMAFLS 462

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++ +      +       L     
Sbjct: 463 GVTGQFYKQFAVTIAISTVISAINSLTLSPALAAKLLQPRGAPRDPLARGLDRSLGWLFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 PFNRFFDR 530



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 6/156 (3%)

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +  L+   +   W   L  I  + + I   L    L G + N+     ++ L+G +  +
Sbjct: 888  MLVFLVLAALYESWTLPLAVILIVPVCICAALFGVWLAGGDNNVFVQVGLVVLMGLACKN 947

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SV 793
             +++ +  R+   L    +   D   ++    L   V TS+A     +P+ + GG    V
Sbjct: 948  AILIVEFARE---LELRGVGIVDAALQACRLRLRPIVMTSIAFIAGAVPLLIGGGAGSEV 1004

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  + +  G++      +F+     + +     +
Sbjct: 1005 RAATGVTVFSGMLGVTLFGLFLTPVFYVTLRRLSGR 1040



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 18/143 (12%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN------DKVVVYDR 743
           W  ++  +  + + I  T     L G   N   +  ++  IG  V+      + V   +R
Sbjct: 365 WRASIIPLLAVPVSIVGTFAGLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENV---ER 421

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
             +         +  +    ++ E  G  +  ++      +PMA   G        FA+ 
Sbjct: 422 YIEE------GHTPLEAAHLAMKEVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFAVT 475

Query: 801 MAFGIVVAASSSIFIAAPILLFI 823
           +A   V++A +S+ ++  +   +
Sbjct: 476 IAISTVISAINSLTLSPALAAKL 498


>gi|51245974|ref|YP_065858.1| multidrug ABC transporter [Desulfotalea psychrophila LSv54]
 gi|50877011|emb|CAG36851.1| related to multidrug-efflux transport protein [Desulfotalea
           psychrophila LSv54]
          Length = 1017

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/639 (12%), Positives = 187/639 (29%), Gaps = 41/639 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  IGL+        +  +  +P+                   V +  
Sbjct: 9   RRPVLATVMSLLIVLIGLVA-----YDRLTVREYPNIDEPTV---------SVVTVYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S ++          Q +++I++ F   R  ++ A +V   +  
Sbjct: 55  SPEIIETEITTIIEDSLSGIEGIKTISSESLQERSQISIVFKMERNADDAAAEVRDRVGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L +D ++ ++         I+    + D+  +   E +  + R   DQI + +   
Sbjct: 115 VRADLPLDVEEPVIAKVEADADPILYMAFSSDKHSNE--EITDYVDRYVTDQIEMIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP+ L     T   +       N    G          +  +  
Sbjct: 173 EAQVLGARKYSMRIWLDPALLTGHGVTPQDVEEAIRAQNIEVPGGRLESSTREFTVLSDT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                      +I   + G                  V    
Sbjct: 233 SLNSTEEFE--------------------NIIVRKSGTTLVRLKDIGRAEIGPQSVRSSL 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +          +   L+A         +   +      S   
Sbjct: 273 RYNGAQAVALGLVKQSVANPLDISIALHKMLPELKASLPEGMKTKIVYDSSIFIERSIEN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      LVL+++F+ +   +  L+   +I +++I +  L+   G ++   ++  +V
Sbjct: 333 VFSSIFEAVALVLLIIFIFLRSVRSTLIPLVTIPVSLIGSFVLMWAFGFSINTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +     K      +   G       +    +T     V +    
Sbjct: 393 LAVGLVVDDAIVVLENVHRHVEKGLKPAEAAIKGMREIGFAVVLMTMTLAAVFVPVAMME 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMI--FIIRYKKMKSIDINPLSRFFLIPD 536
           G        FA+T+  ++++S F A+++   M       + K MK   I       +   
Sbjct: 453 GRTGKLFTEFALTLAGAVIVSGFVALTLTPMMCAKMLRHQDKHMKIFTIMENIFIAIEQG 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     +    G++I     +        L   +       + +      D + ++ 
Sbjct: 513 YKRVLAWSLKTVIFGLTIAVLAGAGSYYLLQQLPSEMSPLEDRGVFMTFAIAPDGANLKY 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +   L+  +   Q                  + A + V 
Sbjct: 573 SDHYLRQTEKLLQPIPESNGVFSVAGMGGKVTEAISFVQ 611



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 80/207 (38%), Gaps = 9/207 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A  ++L  +K  + E +    + ++ I   +    +       V +  + + I++     
Sbjct: 298 ALHKMLPELKASLPEGMKTKIVYDSSIFIERSIENVFSSIFEAVALVLLIIFIFL---RS 354

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  + T+ + +  +      FG   N   + A++  +G  V+D +VV + +    +
Sbjct: 355 VRSTLIPLVTIPVSLIGSFVLMWAFGFSINTLTLLAMVLAVGLVVDDAIVVLENVH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                +   +   K + E     V  +M      +P+A+  G        FA+ +A  ++
Sbjct: 412 HVEKGLKPAEAAIKGMREIGFAVVLMTMTLAAVFVPVAMMEGRTGKLFTEFALTLAGAVI 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           V+   ++ +   +   +   + K+ +I
Sbjct: 472 VSGFVALTLTPMMCAKMLRHQDKHMKI 498



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 66/173 (38%), Gaps = 9/173 (5%)

Query: 663  RELIRKGIVGVIISAIAMLIY--IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
              +     + +  +   ++IY  +  +F+ +   L  + T+ L +   L      G   +
Sbjct: 841  EFMESNSGLIMTFALALIMIYLMMAAQFESFVDPLIILFTVPLSMVGALLALYCTGNSLS 900

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + +   ++TL+G      +++ +      +L     S  + + ++    L   + T+ A 
Sbjct: 901  IYSQVGLITLVGLITKHGILIVEFAN---QLQEQGKSKLEAVLEAATLRLRPILMTTGAM 957

Query: 780  FISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +  +P+A+    G          +  G+ +  + ++F+   + + +   R  
Sbjct: 958  VLGSVPLALASGAGAESRSQIGWVIVGGLTLGTALTLFVVPSVYMLLAKKRQP 1010


>gi|327405833|ref|YP_004346671.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Fluviicola taffensis DSM 16823]
 gi|327321341|gb|AEA45833.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Fluviicola taffensis DSM 16823]
          Length = 1039

 Score =  176 bits (445), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/579 (12%), Positives = 161/579 (27%), Gaps = 37/579 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                +++   I  +GLL      +    + ++P   P               +      
Sbjct: 8   RPVLSLVISIFIVLLGLLA-----MTSLPVTQYPDIAPPA-----------VSVTTRYTG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFL 119
              +  +  +    +   + +                I  + F      +  A  V   +
Sbjct: 52  ANAEVCSKAVVTPLERAINGVPGMTYMSSVSGNDGTSIIQIYFEVGTDPDLAAVNVQNRV 111

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V  +L  +  K  + T  E    ++        V               + ++     
Sbjct: 112 ATVLDELPEEVIKAGVSTEKEINSMLMYINLKSSDVSLDEKFIYNFSDINVLPELRRING 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +     P RL     +   +       N        G    R S   
Sbjct: 172 VGYADIMGNREYAMRIWLKPQRLDAYEISAQDVIEALRKQNLEAAPGKIGESSGRKSQSM 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           QY++    +++                +    +                 +         
Sbjct: 232 QYVLRYTGKLTEKE-------------QYGNIVIKVTETGEMLRLKDIAEVEFGSVEYDV 278

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADLGS 358
                       +   +   + +  I+     LA M +    P     +          S
Sbjct: 279 ISKENGSPSAAIVLKQRPGSNASNVIQQVKERLAEMKQKSFPPGMDYTISYDVSRFLDAS 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            S    T      LV +V+F+ +   +  L+  F++ +++I T A + L G ++ L ++ 
Sbjct: 339 ISEVIKTLIEAFILVALVVFLFLQDWRSTLIPIFAVPVSLIGTFAFMQLFGFSINLLTLF 398

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IG+ VD+ I+V E +  +  +       +           I    +      + +
Sbjct: 399 ALVLSIGIVVDNAIVVVEAVHAKMHEKHLDAKTATIESMKEITGAILAITLVMSAVFIPV 458

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F  G      R F++TM +SI+IS   A+++  A+   +++   + +        F   
Sbjct: 459 AFLSGPVGVFYRQFSVTMAISIVISGINALTLTPALCAIMLKPVDVNAKKSWIQRFFDRF 518

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
                    R +     I    ++    L       +GI
Sbjct: 519 NKGYDKISDRYKRLLELIVNRRTLTIAILCLFILGTWGI 557



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 93/233 (39%), Gaps = 6/233 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              S++   IS +N       +++ +     S    +V E + +   +  P         
Sbjct: 270 EFGSVEYDVISKENGSPSAAIVLKQRPGSNASNVIQQVKERLAEMKQKSFPPGMDYTISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I + I  +I + I + + +++    W   L  I  + + +  T  F  LFG
Sbjct: 330 DVSRFLDASISEVIKTLIEAFILVALVVFLFLQDWRSTLIPIFAVPVSLIGTFAFMQLFG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL  + A++  IG  V++ +VV + +    K++   +  +    +S+ E  G  +  
Sbjct: 390 FSINLLTLFALVLSIGIVVDNAIVVVEAVH--AKMHEKHLDAKTATIESMKEITGAILAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++      +P+A   G V      F++ MA  IV++  +++ +   +   +  
Sbjct: 448 TLVMSAVFIPVAFLSGPVGVFYRQFSVTMAISIVISGINALTLTPALCAIMLK 500



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 89/296 (30%), Gaps = 12/296 (4%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            F      G   +  F             +     +    L +         V  S+   +
Sbjct: 747  FNLQALIGSYYATNFIRYGQMYKVMVQADPKYRAQPEDVLRLRIKNAAGEMVPYSSFTRI 806

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
            +      Q           L  +  D  +    ++ +++   + +P         +    
Sbjct: 807  ERVYGPEQLTRYNMYVSAMLNGEAADGFSSGEAIQAIEETAAKHLPRGFDYEWSGMTR-- 864

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG---FFALFGIEF 718
              E++    V  I     + +Y+ +  ++   L  +  L+       G   F  + G++ 
Sbjct: 865  -EEVLSGSQVFYIFGICLLFVYLLLAAQYESFLLPLPVLLFLPIGIFGSLFFLKILGLDN 923

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            N+ A  A++ LIG    + +++ +     +   +   +            L   + TS A
Sbjct: 924  NIYAQVAMVMLIGLLGKNAILIIEFA---ILKRSEGRTVVQAAIDGAVARLRPILMTSFA 980

Query: 779  AFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                ++P+    G   I   +     A G++      + I   + +      +K+ 
Sbjct: 981  FTAGMIPLMMASGAGEIGNSTIGSAAAGGMLFGTIFGVIIIPGLYVIFASMSSKSK 1036


>gi|306845630|ref|ZP_07478199.1| transporter, hydrophobe/amphiphile efflux-1 family [Brucella sp.
           BO1]
 gi|306273951|gb|EFM55778.1| transporter, hydrophobe/amphiphile efflux-1 family [Brucella sp.
           BO1]
          Length = 1070

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/548 (10%), Positives = 153/548 (27%), Gaps = 40/548 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I   GL+        +  + +FP  +P               + +   
Sbjct: 8   KRPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTAT 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++      + + +     +   S     N    +T++F            V 
Sbjct: 50  YPGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++   + L  +  +  +    +    + +            +  +   +   +D++  
Sbjct: 110 NRVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q          +    +   L  L  T   +       N        G   + D 
Sbjct: 170 VPGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAVSSQNVQAAVGRLGAPPMTDQ 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +  +  ++                +    I                 +      
Sbjct: 230 QQIQLTLTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQS 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L     +          +     E    +   L+          +         
Sbjct: 277 YDTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQNFPAGLDYKITYDTTVFVS 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S
Sbjct: 337 STIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTIS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  ++L IG+ VD  I+V E +             +         + I    +  L   +
Sbjct: 397 LFAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFI 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   
Sbjct: 457 PVAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDK 516

Query: 533 LIPDCIAI 540
           L      I
Sbjct: 517 LSSGIEKI 524



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFIPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|72384095|ref|YP_293449.1| hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134]
 gi|72123438|gb|AAZ65592.1| Hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134]
          Length = 1076

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/686 (11%), Positives = 183/686 (26%), Gaps = 50/686 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL       P   + +FP+  P               +++  + 
Sbjct: 25  RPKFAWVVAIFILLAGLLAI-----PNLPIAQFPNVAPP-------------QILITANY 66

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLF 118
                  +       +   L      ++      N    IT++F      +     V   
Sbjct: 67  PGASAQTITDTVTSVIEEELASAKHLLYFSSNNSNNVVEITVTFEPGTEPDLAQVDVQNR 126

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIGI 176
           L+   S+L    ++  LV        ++        +      +E +   +R    +I  
Sbjct: 127 LKNAESRLPDSVRQLGLVVEQANAGFLMFYGLTFKDNDPSRSTVELADYAVRNINKEIRR 186

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP ++     +  +++      N       FG R     
Sbjct: 187 IPGVGKLQFYSS-DPSMRVWLDPQKMVGYGVSVDQVNQAIRNQNVQIPAGAFGARPSNAG 245

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +                       +    I                     L  
Sbjct: 246 QELTASLL-------------IQGMKRDPKEFGNIIVRANPDGSTVRLSDLGRTEVDLQS 292

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T          L          ++         
Sbjct: 293 FAYESRVNGRPAVTGAIQLAPGANSLETSAAIKAKMEELSKSFPEHISYVLAYDTSLFVK 352

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV +V+ + +   ++ LV    + + ++ T A++  +G ++ + +
Sbjct: 353 VAMKKVLATLLEAVVLVFLVILLFLQNVRYTLVPTIVVPVCLLGTFAVMYAIGFSINMMT 412

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +     S+    I    +      +
Sbjct: 413 MFGMVLAIGILVDDAIVVVENVERIMAEEGLSPVDATVKAMSQVAGAIVGITLVLTAIFL 472

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L F  G      + FAI++ +SIL S F A+++  A+         +K + I       
Sbjct: 473 PLAFMSGSVGIIYKQFAISLAVSILFSGFLALTLTPALCAT-----MLKPLPIGHHHEKK 527

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    F         ++      +   +  +     I     +++       V   
Sbjct: 528 GYFGWFNRIFSGLTNRFDWLNRKLIKRAGRGMLVYAALVVILGVAYVRV---PEAFVPQE 584

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
               NL  + +   +      +    V       D+V Q   L       T     +   
Sbjct: 585 DQGYNLVDILLPPGASYARSEKVTAEVEKYLSSRDAVDQVISLVGWSYSGTGENTATIFP 644

Query: 653 NTEIVGPKISRELIRKGIVGVIISAI 678
           + +    + + + + +    +  +  
Sbjct: 645 SFKHWTERSAEQSVDQETNALNEAFA 670



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + L     + + +  T       G   N+  +  ++  IG  V+D +VV + +     
Sbjct: 380 VRYTLVPTIVVPVCLLGTFAVMYAIGFSINMMTMFGMVLAIGILVDDAIVVVENV--ERI 437

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S  D   K++++  G  V  ++      LP+A   GSV      FAI +A  I+
Sbjct: 438 MAEEGLSPVDATVKAMSQVAGAIVGITLVLTAIFLPLAFMSGSVGIIYKQFAISLAVSIL 497

Query: 807 VAASSSIFIAAPI 819
            +   ++ +   +
Sbjct: 498 FSGFLALTLTPAL 510



 Score = 44.3 bits (102), Expect = 0.087,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 52/148 (35%), Gaps = 14/148 (9%)

Query: 689  KWYFALGAI----TTLILDITKTLGFFALFGIEF---NLTAVAAVLTLIGYSVNDKVVVY 741
             W   L  +       +  +   +    L G      ++     ++T++G +  + +++ 
Sbjct: 907  SWSIPLSVMLVVPIGALGSVLAVMLVNLLPGATTMANDVYFKVGLVTIVGLAAKNAILIV 966

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFA 798
            +  +    L     S R+   ++        V TSMA  + V+P+ V    G +   S  
Sbjct: 967  EFAK---TLVADGRSVREAAIEAARLRFRPIVMTSMAFILGVVPLVVATGAGAASQSSLG 1023

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +  G + A    + +  PI +     
Sbjct: 1024 TGVIGGTIAATVLGV-VFVPIFVDFVMR 1050


>gi|288573272|ref|ZP_06391629.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569013|gb|EFC90570.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 1049

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/539 (12%), Positives = 151/539 (28%), Gaps = 41/539 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  ++   G + AL        + ++P   P               + +E   
Sbjct: 9   RPRFAMVIAVVLALAGGIAAL-----NLPVKQYPDIAPP-------------QISVEAMY 50

Query: 63  DDFVNGFLQMYSDE-LRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       L   +     +   +          +T++F      +    KV  
Sbjct: 51  PGADAETLANTVGIPLEEAINGVDDMIYMNSTSSNTGRYSLTITFKTGTDTDMALVKVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q     L  +     + T +     +             +   +        + +   
Sbjct: 111 RVQQAEPLLPGEVTARGITTESRFSDVLGFVALISPNGTRDSTFMTDYAQNNVSNALKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP RL  +  +T+ ++      N        G      S+
Sbjct: 171 PGLGDVQVMGA-KYSIRVWLDPDRLASMGLSTSDVAGAISSQNRQASLGSIGAAPGDGSN 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +  K  +  +                   +                 I       
Sbjct: 230 SLVYTLTTKGRLGSVR-------------DFENVVIRTTEDGAMVKLKDVARIELGSEDY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L    +   + S  +  +    +         L          ++   +      
Sbjct: 277 TFHAGLNGAPVAMMLLSQASDSNALDAMRATEKALKDLSKTLPSDMEFVIGYDSTEYVKE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T A+   LV++V ++ +   +  LV   +I ++++ T   L  LG ++ + ++
Sbjct: 337 TIHEILFTLALTFSLVVLVCYVFLQDWRVTLVPVMAIPISLLATFIGLMTLGFSINILTL 396

Query: 418 AGIVLGIGLAVDSNILVNERI-REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              VL IG  VD  I+V ER+     R       +           +  + +  L   V 
Sbjct: 397 FAFVLVIGTVVDDAIIVVERVLYVMERDGVGSVEATVQAMKDVTGPMTATTLVFLAIFVP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           + F GG      R FA+T+  S++ S+  A+++  AM   ++   K K+          
Sbjct: 457 VAFMGGMTGEIYRQFAVTVSFSVVFSLVVALTLSPAMCAHMLHGIKPKTRGPLAWFNRM 515



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 90/264 (34%), Gaps = 11/264 (4%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
               + +       +  ++         +    +       +  +             + 
Sbjct: 246 DFENVVIRTTEDGAMVKLKDVARIELGSEDYTFHAGLNGAPVAMMLLSQASDSNALDAMR 305

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWY 691
             +K + ++          ++G   +  +          + +  S + ++ Y++++  W 
Sbjct: 306 ATEKALKDLSKTLPSDMEFVIGYDSTEYVKETIHEILFTLALTFSLVVLVCYVFLQ-DWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L  +  + + +  T       G   N+  + A + +IG  V+D ++V +R+     + 
Sbjct: 365 VTLVPVMAIPISLLATFIGLMTLGFSINILTLFAFVLVIGTVVDDAIIVVERVL--YVME 422

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVA 808
              +   +   +++ +  G    T++      +P+A  G   G +   FA+ ++F +V +
Sbjct: 423 RDGVGSVEATVQAMKDVTGPMTATTLVFLAIFVPVAFMGGMTGEIYRQFAVTVSFSVVFS 482

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
              ++ ++  +   +        R
Sbjct: 483 LVVALTLSPAMCAHMLHGIKPKTR 506



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 72/172 (41%), Gaps = 12/172 (6%)

Query: 668  KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
             G   +II+   +  Y+++      W   LG I +L   +        +F ++ +L+  A
Sbjct: 864  SGQTVMIIAIAVLFGYLFLVAQYESWSVPLGVILSL--PVALLGALVGIFVMKLSLSIYA 921

Query: 725  --AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               +L L+G S  + +++ +  ++  +     +   D +  + +E     + T+    I 
Sbjct: 922  QLGILLLVGLSAKNAILIVEFAKE--QHDEKGLPVIDAVGIAASERFRSVMMTAFTCVIG 979

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +LPM      G          M FG+ +A++  IF+   + +F+  +R +  
Sbjct: 980  ILPMLFATGAGAGSRLHVGTTMFFGMSIASTFGIFLIPGLYVFLQTYRERIK 1031


>gi|326440035|ref|ZP_08214769.1| preprotein translocase subunit SecD [Streptomyces clavuligerus ATCC
           27064]
          Length = 600

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 107/560 (19%), Positives = 201/560 (35%), Gaps = 61/560 (10%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD- 64
            ++IL +++   G + A                       LG+DL GG+ + L+   +  
Sbjct: 21  LVLILIALVALTGGMFA----------------TGDTTPRLGIDLAGGTTITLKAKAEPG 64

Query: 65  ----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
                    +      L   +   G+    ++    + I ++       E    +V    
Sbjct: 65  KESAVNETNMNTAVGILERRVNGLGVSEAEVQTQGRSHIIVNIPKGTDSEQARRQVGTTA 124

Query: 120 QGVNSKLNVDPKKNLLVTT---------------------TEKEISIVLSQNNIDQVISH 158
           Q     +        +                           + S   S     Q    
Sbjct: 125 QLYFRPVLQVAAGAPVPQQPTPGASESGKPAEGKDAKDAKDGDKASPSASTGTSAQPGGS 184

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
             +        +    G SE      G+          + P           + +F  + 
Sbjct: 185 TPQGRAVTDALKDPSPGASEPGKPAEGAKDGKDGKDAAKTPDPAPTGDVAALQTAFATLN 244

Query: 219 PNNSKKGFMFGVRFLRDSD----------GNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
             + K           ++             +  +    E+ G  ++ A   FD      
Sbjct: 245 CEDQKARAAVTESARPENPMVSCGKNSAGQWEKYLLGPAEVDGKDVDDAKGQFDQNRGIW 304

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSG----KAQISGNFT 324
           +V + F + G+++F ++T     +         VL   V++    +      A+ISG+F 
Sbjct: 305 IVTMDFTDKGSKKFQKITSKLSQQQSPANQFAIVLDGEVVSAPQVNQTLTANAEISGSFN 364

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            ++A  L  ML  G+LP+         V A LG + +  G  A   GL L++++++  Y 
Sbjct: 365 QKSAQELGNMLSYGALPLTFQEESVTTVSAALGGEQLRAGLIAGAIGLALVIIYLVAYYR 424

Query: 385 KWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
               +A  S+ ++  LT  L+SLLG      L LP++ G ++ IG+  DS I+  ERIR+
Sbjct: 425 GLAAIAILSLLVSAALTYVLMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERIRD 484

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E R+ +++  +++  + RA  TI  S+  + +A  VLF    G V+GFA T+GL+ L+ +
Sbjct: 485 EVREGRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDV 544

Query: 501 FTAISIVRAMMIFIIRYKKM 520
                  + +M    R K  
Sbjct: 545 VVVFFFTKPLMTLAARSKFF 564



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 88/261 (33%), Gaps = 10/261 (3%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              +      KG  +   + ++        +      + D    +       L       
Sbjct: 303 IWIVTMDFTDKGSKKFQKITSKLSQQQSPANQF--AIVLDGEVVSAPQVNQTLTANAEIS 360

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
           G    ++            +      ++   V   +  E +R G++   I    ++IY+ 
Sbjct: 361 GSFNQKSAQELGNMLSYGALPLTFQEESVTTVSAALGGEQLRAGLIAGAIGLALVIIYLV 420

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVY 741
             ++   A+ AI +L++    T    +L G       NL AV   +  IG + +  +V +
Sbjct: 421 AYYRGLAAI-AILSLLVSAALTYVLMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVYF 479

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      + R  ++++        + +   +F++   + +     +  FA  +
Sbjct: 480 ERIRDEVRE---GRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTL 536

Query: 802 AFGIVVAASSSIFIAAPILLF 822
               ++      F   P++  
Sbjct: 537 GLTTLLDVVVVFFFTKPLMTL 557


>gi|116049969|ref|YP_791221.1| multidrug efflux protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585190|gb|ABJ11205.1| RND multidrug efflux transporter [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 1045

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/682 (11%), Positives = 185/682 (27%), Gaps = 39/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPVFAWVISLLIVLAGVLAI-----RFLPVAQYPDIAPPVV---------NVSASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +    Q  +TL+F      +  A +V   L+ V
Sbjct: 54  AKVVEEAVTAIIEREMNGAPGLLYTKATSSTGQASLTLTFRQGVNADLAAVEVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +++ +      +   ++           A+E         +  +   E   +
Sbjct: 114 ESRLPESVRRDGIYVEKAADSIQLIVTLTSSSGRYDAMELGEIASSNVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP++L  +  + + +       N        G   + DS      
Sbjct: 174 VQTWGA-EYAMRIWPDPAKLTSMNLSASDLVNAVRRHNARLTVGDIGNLGVPDSAPISAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+    +                 +                      +    +       
Sbjct: 233 VKVDDTL-------------VTPEQFGEIPLRIRADGGAIRLRDVARVEFGQSEYGFVSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L           +          S    
Sbjct: 280 VNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSYNIPYDTSAFVEISIRKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+++ +   +  L+    + + ++ T  ++  LG ++ + ++ G+VL
Sbjct: 340 VSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +     ++  S   +      +    I    +  +   V + FF 
Sbjct: 400 AIGILVDDAIIVVENVERLMAQEGLSPHDTTVKAMRQISGAIVGITVVLVSVFVPMAFFS 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +SI  S F A+S+  A+   ++R       +      +F      
Sbjct: 460 GAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLRPIDADHHEKRGFFGWFNRAFLR 519

Query: 539 AIQFMR-------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                R       AR     +     I  + LLF       +  +      ++  +P   
Sbjct: 520 LTGRYRNAVAGILARPVRWMLVYALVIGVVALLFVRLPQAFLPEEDQGDFMIMVMQPEGT 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            +  +      +     ++      + V      GD  +   +   +K           +
Sbjct: 580 PMAETMANVADVERYLAEHEPVAYAYAVGGFSLYGDGTSSAMIFATLKDWSERREASQHV 639

Query: 652 QNTEIVGPKISRELIRKGIVGV 673
                   +    L  + +  +
Sbjct: 640 GAIVERINQRFAGLPNRTVYAM 661



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 82/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +        L        ++VA  + +     +++   P     
Sbjct: 263 DVARVEFGQSEYGFVSRVNQMTATGLAVKMAPGSNAVATAKRIRATLDELSRYFPEGVSY 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N            IRK +  ++ + + +   +++  + +   L     + + +  T    
Sbjct: 323 NIPYDTSAFVEISIRKVVSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVM 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  +  ++  IG  V+D ++V + +     +    +S  D   K++ +  G 
Sbjct: 383 LGLGFSINVLTMFGMVLAIGILVDDAIIVVENV--ERLMAQEGLSPHDTTVKAMRQISGA 440

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  ++      +PMA + G+V      FA+ +A  I  +A  ++ +   +   +  
Sbjct: 441 IVGITVVLVSVFVPMAFFSGAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLR 497



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 89/263 (33%), Gaps = 11/263 (4%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            GID  G + +       V L+       +L    ++  N     N   +         A 
Sbjct: 776  GIDDIGRLHVRNEQGEMVPLATFAKAAWTLGPPQLTRYNGYPSFNLEGQAAPGYSSGEAM 835

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              + E+++     I    + Q+ E              +  + +  I  L    +   W 
Sbjct: 836  QAMEELMQGLPEGIAHEWSGQSFEERLSGAQAP----ALFALSV-LIVFLALAALYESWS 890

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I  + L +   L   +L G+  ++     ++T+IG S  + +++ +  +     Y
Sbjct: 891  IPLAVILVVPLGVLGALHGVSLRGLPNDIYFKVGLITIIGLSAKNAILIIEVAKD---HY 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S      ++    L   V TS+A    V+P+A+    G     +    +  GIV A
Sbjct: 948  QEGMSLLQATLEAARLRLRPIVMTSLAFGFGVVPLALSSGAGSGAQVAIGTGVLGGIVTA 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F+     L +        
Sbjct: 1008 TVLAVFLVPLFFLVVGRLFRLRK 1030


>gi|187918509|ref|YP_001884072.1| preprotein translocase subunit SecF [Borrelia hermsii DAH]
 gi|119861357|gb|AAX17152.1| protein translocase subunit SecF [Borrelia hermsii DAH]
          Length = 299

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 135/300 (45%), Gaps = 8/300 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHG--LNYGIDFKGGIQLGVLANRPVDLSV 593
                 F++     + +SI          F +    N+GIDF  G+ +  + ++      
Sbjct: 1   MQKVFNFLKYGNKAIIVSICMIFSGFIYTFMYHDGYNWGIDFSSGVNINFVIDKAGIKDY 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI-----TEIVPL 648
               +                              +    + + +   +      E    
Sbjct: 61  DMQKVLFPVYKTFDVNEIISSDASKSHFSIIVKSDITDYTLKKEIHTTLIDKLNAEFGVN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I ++  +    S  L  K ++ V ++   +L+Y+ +RF+  +A+ +I   I DI   +
Sbjct: 121 VEILDSYFIDSNFSSILRTKSMLLVCLTFALILVYVALRFRLSYAVASIFATIHDILFVV 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  +F IE N + + ++LT+IGYS+ND ++++DR+R+N +   T  SF ++++ SI +T
Sbjct: 181 AFLGVFRIEINSSIIVSILTIIGYSLNDTIIIFDRIRENSRNM-TDTSFLNVLNLSIRQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TS+  F++VL + V+    I  F++    G+VV   SSIFIA+PILL  Y    
Sbjct: 240 LSRTILTSITTFVAVLSIYVFTDGAIKDFSLIFMVGVVVGTYSSIFIASPILLSCYKKIK 299


>gi|126696268|ref|YP_001091154.1| preprotein translocase subunit SecF [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543311|gb|ABO17553.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9301]
          Length = 304

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 117/230 (50%), Gaps = 8/230 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++ S +    + +      N L+ ++           ++  +   I  +   S      
Sbjct: 77  RDISSNKNFINNIKLQFQNNNKLISIRTPYLSIEESNNLITNLDNIIGPLNYESKDSRL- 135

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GPK+ + L+   +  +++S  A+ +YI IRF   +AL A+  L  D+    G F+  G
Sbjct: 136 -IGPKLGKRLLTNCVTSLLVSLFAISLYITIRFDKKYALFALLALFHDLLIVFGIFSWLG 194

Query: 716 I----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           I    E N     ++LT+ GYSVND VV++DR+R+N+K  +    + + I  S+NE+  R
Sbjct: 195 IILSVEVNSLFAVSLLTIAGYSVNDTVVIFDRIRENLK--SKEEGYNETIQLSVNESFRR 252

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + +TS+   I +L + ++G   +  F++ ++ GI+V + SSI +A  +LL
Sbjct: 253 TTFTSITTLIPLLSIILFGSYSLFWFSLALSLGIIVGSYSSILLAPSLLL 302


>gi|117620730|ref|YP_857102.1| protein-export membrane protein SecD [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562137|gb|ABK39085.1| protein-export membrane protein SecD [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 617

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 149/518 (28%), Positives = 271/518 (52%), Gaps = 31/518 (5%)

Query: 21  IALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF 80
            +       S    + S +    I LGLDLRGGS L++ VD    V+   +   D LR+ 
Sbjct: 116 SSALTLEFYSNAPGWISQLGAAPIKLGLDLRGGSQLLIGVDLSFVVDNQTKNLVDMLRTQ 175

Query: 81  LKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            ++  +   ++ R  + ++ +   +   +      +               +    +  +
Sbjct: 176 FREARLRGANVARVSEGEVRVILPEVADQAPWLTIIKDSA--------GTRQDQWTLKRS 227

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             E+ +V+S+     + ++A+ Q++ I+++RI+++GI E+++QR G   I I+LPG  +P
Sbjct: 228 GNELRLVMSEAERTLLANNAVTQNLSILKKRINELGIVEASVQRQGQDGIRIELPGVHNP 287

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
            + ++++G TA ++F++   ++          F+ D +G    +  K  ++G H+  A A
Sbjct: 288 KQAKEVIGATASLAFYEAQADSRF--------FMADRNGQAVGLARKPVLTGEHIVDARA 339

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------V 307
           N      +P V+I  D +G  +  + +R N+GKP+A V       A              
Sbjct: 340 NMGEMG-QPQVNIVLDSLGGSKMNQFSRQNVGKPMATVFTEYKTNAEGKLRARSEVINVA 398

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             Q     + +I+G  ++  A  LA +LRAG+L   L I+EER++G  LG  +I  G  A
Sbjct: 399 TIQTALGNQFRITGIGSLPEAQELAMLLRAGALTAPLKILEERSIGPTLGLQNIEAGFTA 458

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGL 426
           +  G+  ++LFM+  Y K+G VA  ++  N+++ + +L++L  A LTLP IAG+VL +G+
Sbjct: 459 LAFGMAGMMLFMMAWYRKFGWVAITALIANLLMQVGMLAVLPGAVLTLPGIAGLVLTVGM 518

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+++L+ ERI++  R+  S+  ++D G+  A+ TIFD+NIT LI  VVL+  G G ++
Sbjct: 519 AVDTHVLIFERIKDRLREGGSLANAIDFGYRSAFRTIFDANITTLICAVVLYAIGSGPLQ 578

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GF+IT+ L ++ SM T I   RA++  +      K + 
Sbjct: 579 GFSITLILGLISSMVTGIWGTRAIINPLWGKSSAKLLR 616



 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 76/180 (42%), Gaps = 6/180 (3%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I  G   +      M++++   ++  F   AIT LI ++   +G  A+  
Sbjct: 442 SIGPTLGLQNIEAGFTALAFGMAGMMLFMMAWYR-KFGWVAITALIANLLMQVGMLAVLP 500

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  ++      S  + ID            
Sbjct: 501 GAVLTLPGIAGLVLTVGMAVDTHVLIFERIKDRLRE---GGSLANAIDFGYRSAFRTIFD 557

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL-FIYDWRAKNARI 833
            ++   I  + +   G   +  F+I +  G++ +  + I+    I+        AK  R+
Sbjct: 558 ANITTLICAVVLYAIGSGPLQGFSITLILGLISSMVTGIWGTRAIINPLWGKSSAKLLRV 617


>gi|295136196|ref|YP_003586872.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Zunongwangia
           profunda SM-A87]
 gi|294984211|gb|ADF54676.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Zunongwangia
           profunda SM-A87]
          Length = 1027

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/549 (12%), Positives = 160/549 (29%), Gaps = 35/549 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKK-EGI 86
                +FP   P               + +           L +  +  +   +   E +
Sbjct: 2   SLPTSQFPDVAPPT-------------IEVVASYPGANAKTLSETVAAPIEKEINGVEDM 48

Query: 87  GVFSMRQI-QNKITLS--FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
              + +     ++ +   F      +    +V   +     +L    ++  + T      
Sbjct: 49  IYMTSQSSADGRVIVQIAFKLGTDLDKAQVQVQNRVAIAEPRLPESVRRLGVTTRKVSPD 108

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +++      +        +   + Q  D++   +              +    DP ++ 
Sbjct: 109 MLMVINLYSPEETYDQTYMANYAVLQLRDELARIKGIGDIQLFGAAEYAMRIWLDPDKIA 168

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            L  T A++       N    G         +    +  ++ + ++              
Sbjct: 169 SLDLTAAEVVAALRAQNVQIAGGTLNTLPSGNQSAFEINIQTQGKL-------------- 214

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
            + +   D+   +   R                      L            +   +   
Sbjct: 215 VSPQQFEDVIIKDNDGRIVRLKDIGRAELGAQNYTTRGYLGKKPAIAMPVFQQPGGNALE 274

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T          L           +          S      T      LV+ V+ + +  
Sbjct: 275 TAHEIQEKMKTLSERFPEDLNYDIAYNPTKFIQKSIDEVYHTIFEAILLVIFVILLFLQS 334

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  ++   +I +++I T A++  +G +L   ++ G+VL IG+ VD  I+V E +     
Sbjct: 335 WRAAVIPILAIPVSLIGTFAVMQAIGFSLNTLTLFGLVLAIGIVVDDAIVVVENMERYLS 394

Query: 444 KNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           K  S   +          A   I    I   I T  L    G   + F +T+ ++  IS+
Sbjct: 395 KGLSPKEAAIKTMDEVGGALVAIGLVLIAVFIPTAFLEGISGQFYKQFGMTIAVATAISV 454

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
           F ++++  AM   ++R+++        L R F+        FM +     G S+   + +
Sbjct: 455 FVSLTLSPAMAALLMRHEEKTDKKPFILLRPFVFIGDKFNHFMISLSNNYGKSVQKLVRT 514

Query: 561 ICLLFTHGL 569
             L+     
Sbjct: 515 AMLVMIVYF 523



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 74/253 (29%), Gaps = 19/253 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A         R  L       +      G        + Q        R  E +   I 
Sbjct: 240 RAELGAQNYTTRGYLGKKPAIAMPVFQQPGGNALETAHEIQEKMKTLSERFPEDLNYDIA 299

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   ++ + V   I   +            + + + +     W  A+  I  + + 
Sbjct: 300 YNPTKFIQKSIDEVYHTIFEAI-----------LLVIFVILLFLQSWRAAVIPILAIPVS 348

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLID 762
           +  T       G   N   +  ++  IG  V         + +NM+ Y +  +S ++   
Sbjct: 349 LIGTFAVMQAIGFSLNTLTLFGLVLAIGIVV----DDAIVVVENMERYLSKGLSPKEAAI 404

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K+++E  G  V   +      +P A      G     F + +A    ++   S+ ++  +
Sbjct: 405 KTMDEVGGALVAIGLVLIAVFIPTAFLEGISGQFYKQFGMTIAVATAISVFVSLTLSPAM 464

Query: 820 LLFIYDWRAKNAR 832
              +     K  +
Sbjct: 465 AALLMRHEEKTDK 477



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 92/264 (34%), Gaps = 13/264 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
             +    I++     + V +  + S+  +     I   N     +             A  
Sbjct: 759  PEDLDKIRIRNRDGQMVPMGTIASHENTAGASRIPRFNLYPSASLNGDFSPGYSSGEAIE 818

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
            R+ ++  + + + V                ++      V   ++ + + + +  +F+   
Sbjct: 819  RMEQLANEVLPDGVSF-----EWTEIAYQEKQAGNTAGVAFFLAVVFVFLLLAAQFESLI 873

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I  + + +   +    L G++ N+     ++ L+G +  + +++ +  +   +L 
Sbjct: 874  LPLAVIFIVPMVLLFAILGIDLAGLDNNIMVQIGLVVLVGLASKNAILIVEFAK---QLE 930

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS- 810
               +  +  + ++    L   + T+MA  + V+P+A+  G+      + +   +      
Sbjct: 931  EQGMELKKAVIEASKLRLRPILMTAMAFILGVVPLALATGAG-AELRVSLGIAVFSGMLG 989

Query: 811  SSIF--IAAPILLFIYDWRAKNAR 832
             +IF     P+  ++        R
Sbjct: 990  VTIFGIFLTPVFYYLGRKWTTKRR 1013


>gi|16263363|ref|NP_436156.1| Cation/multidrug efflux pump [Sinorhizobium meliloti 1021]
 gi|14524047|gb|AAK65568.1| Cation/multidrug efflux pump [Sinorhizobium meliloti 1021]
          Length = 1044

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/675 (10%), Positives = 165/675 (24%), Gaps = 47/675 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++   G L        Q  + +FP   P               + +    
Sbjct: 10  RPRLATVIAVVMAIAGALALF-----QIPIAQFPQITPPE-------------VQVTASY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+      +   +   E +   S     N    +T++FA           V  
Sbjct: 52  PGANASVLEESVGAPIEDQVNGVEDMLYMSSSSTNNGTYSLTVTFAVGTDPALAQVNVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L     +  +         ++       +     I  S        D I   
Sbjct: 112 RVALATPRLPASVTQTGVSVRARSSSMLMGVAIYSPEGTRDEIFISNYAANNIRDAIARV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P R++ L  T   ++      N        G        
Sbjct: 172 AGVGEAGIFG-PSYSMRIWMNPDRMQALGLTATDLTSAIQAQNAQASAGQLGSPPATSGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                     I                 +       
Sbjct: 231 QLQLTIMAQGRLATEE-------------DFSNIIVRTNTEGALVRLRDVARVELGAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +    A+ +              L           +          
Sbjct: 278 DTASTFNGQPSATVVVYQSAEANALAVSRAVLSELDRLSRQFPEDVAYAIVFDTTAFITE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T AI   LV+ V +  +   +  ++   +I +++I   A+L LL  +    ++
Sbjct: 338 TIKEIAITLAITFALVVAVTYFFLQDWRATVIPTLTIPVSLIGGFAVLYLLDYSANTITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L I L VD  I+V E ++     +  +V  +     S+    I  + +      V 
Sbjct: 398 FAVILAISLVVDDAIIVVENVKRLMAEERLNVHDATRRTMSQVTGPIVATTLVLAALFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINP 527
           + F     G   R F++T+ ++I  S   A+++  A+ + +       R     + +   
Sbjct: 458 IAFVAGITGQLYRQFSVTILITITFSTINALTLSPALCVLMLRSPREQRSGIFGTFNRGL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R     V +  +                  + +G + + V    
Sbjct: 518 DFSRNWYVAMLDRMSRRLWIASVILLAILGGVYGLFRALPTGFVPSEDQGYLFINVQLPN 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L   +  L+++                        G S A   +  +          
Sbjct: 578 AASLERTQQALDTVSRILQRTPGVANSVGIAGNSMVGGGGSNAGMVITALKPWGERRSAE 637

Query: 648 LSTIQNTEIVGPKIS 662
            S       +     
Sbjct: 638 ESIDAIMNRLRADFG 652



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 65/167 (38%), Gaps = 9/167 (5%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              +I+    +  Y+++      W   L  + ++ + +   L    L  I+ N+ A   ++
Sbjct: 869  TALILLMGLIFTYLFLVGQYESWSVPLAVMLSVAVAVLGALVGLMLASIDINIYAQIGLV 928

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG +  + +++ +  ++        ++  +       +     + T+MA+ + V+P+ 
Sbjct: 929  LLIGLAAKNAILIVEFAKE---RRDKGMATPEAAAAGTAQRFRPVLMTAMASILGVIPLV 985

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    G     +  + +  G++V     + +     + +   R +  
Sbjct: 986  IATGAGAGSRRAIGMTVFGGLLVGTVVGLLLIPVFYVLVQTVREQAK 1032



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 83/280 (29%), Gaps = 9/280 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S   +      L           +    + V  N    L  +R                 
Sbjct: 223 SPPATSGQQLQLTIMAQGRLATEEDFSNIIVRTNTEGALVRLRDVARVELGAQSYDTAST 282

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-V 671
                   +            V   V  ++  +           +    +  +      +
Sbjct: 283 FNGQPSATVVVYQSAEANALAVSRAVLSELDRLSRQFPEDVAYAIVFDTTAFITETIKEI 342

Query: 672 GVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            + ++    L+     F    W   +    T+ + +        L     N   + AV+ 
Sbjct: 343 AITLAITFALVVAVTYFFLQDWRATVIPTLTIPVSLIGGFAVLYLLDYSANTITLFAVIL 402

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            I   V+D ++V + +++ M      ++  D   +++++  G  V T++      +P+A 
Sbjct: 403 AISLVVDDAIIVVENVKRLMAEE--RLNVHDATRRTMSQVTGPIVATTLVLAALFVPIAF 460

Query: 789 ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G +   F++ +   I  +  +++ ++  + + +  
Sbjct: 461 VAGITGQLYRQFSVTILITITFSTINALTLSPALCVLMLR 500



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 68/549 (12%), Positives = 153/549 (27%), Gaps = 60/549 (10%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M    W+  +  +    G+           +       +               ++ L  
Sbjct: 531  MSRRLWIASVILLAILGGVYGLFRALPTGFVPSEDQGYLF-------------INVQL-- 575

Query: 61   DEDDFVNGFLQMYSDELRSFL-------KKEGIGVFSMRQIQNK-----ITLSFADSR-- 106
              +       Q   D +   L          GI   SM           IT         
Sbjct: 576  -PNAASLERTQQALDTVSRILQRTPGVANSVGIAGNSMVGGGGSNAGMVITALKPWGERR 634

Query: 107  FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
              E   D +   L+    ++                 +       +      + ++  E+
Sbjct: 635  SAEESIDAIMNRLRADFGRIPTASVVPFNPPAIPGLGTTGGFDLRLQARSGQSQQEIAEV 694

Query: 167  IRQRIDQIGISESTIQRLGSHRILIQLPGE-QDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
            +R  I +   +        +    +       D  R      +TA +         S   
Sbjct: 695  MRGLIVKANQTPGLASVFSTFSADVPQVFLNVDRRRAELFGVSTATIFNAMQSHLGSSYV 754

Query: 226  FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
              F +         Q   + +  I  I      +          +       G       
Sbjct: 755  DDFNIFSRVYQVRIQDEPQFRSRIEDIQRLRVRSRNGELVPLQSLLSISTSYG------- 807

Query: 286  TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
                       +    +  +  IN    +G +      T+ +          G     L 
Sbjct: 808  --------PTAINRYNLFPSASINGQAATGTSTGQALATMASLAEQNLPEGFGFEWTGLA 859

Query: 346  IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            + EE+         +  +    ++ GL+   LF++  Y  W +     + + V +  AL+
Sbjct: 860  LQEEQ---------AGNQTALILLMGLIFTYLFLVGQYESWSVPLAVMLSVAVAVLGALV 910

Query: 406  SLLGATLTLPSIA--GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
             L+ A++ +   A  G+VL IGLA  + IL+ E  +E   K  +   +   G ++ +  +
Sbjct: 911  GLMLASIDINIYAQIGLVLLIGLAAKNAILIVEFAKERRDKGMATPEAAAAGTAQRFRPV 970

Query: 464  FDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              + + +++  + L      G G+ R   +T+   +L+     + ++    + +   ++ 
Sbjct: 971  LMTAMASILGVIPLVIATGAGAGSRRAIGMTVFGGLLVGTVVGLLLIPVFYVLVQTVREQ 1030

Query: 521  KSIDINPLS 529
                     
Sbjct: 1031 AKERFFRTR 1039


>gi|296314388|ref|ZP_06864329.1| multiple transferable resistance system protein MtrD [Neisseria
           polysaccharea ATCC 43768]
 gi|296838947|gb|EFH22885.1| multiple transferable resistance system protein MtrD [Neisseria
           polysaccharea ATCC 43768]
          Length = 1067

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 161/574 (28%), Gaps = 48/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS                 ++ L    
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAP-------------NITLRATY 49

Query: 63  DDFVNGFLQ----MYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                  ++       +   + ++       S        ++L+F     ++    +V  
Sbjct: 50  PGASAQVMEDSVLSVIERNMNGVEGLDYMTTSADSSGSGSVSLTFTPETDEDLAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   
Sbjct: 110 KLSEVLSMLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q          +    DP +L+    + A +       N        G        
Sbjct: 168 EGVGQVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNIQISAGSIGSLPAVRGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  + ++S                +    I          +      +G  +   
Sbjct: 227 TVTATVTAQGQLS-------------TAEEFGNVILRANTDGSNVYLKDVAKVGLGMEDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +      A L                      
Sbjct: 274 SSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEI 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++
Sbjct: 334 SIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM----GFSRAYSTIFDSNITALIA 473
             +VL IG+ VD  I+V E +            +         S A   I    ++  + 
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMAGEGLPPKAATKKAMGQISGAVIGITAVLMSVFVP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             +     G   + FA+TM  SI  S F A+++  A+         +K+I          
Sbjct: 454 LAMFSGATGNIYKQFALTMAASIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKG 508

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                  +F        G        ++ ++  +
Sbjct: 509 FFGWFNKKFDNWTHGYEGWVAKVLRKTLRMMVVY 542



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 93/247 (37%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVAKVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  +    K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKAATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMAASIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV-------------AAVL 727
            L+   +   W   L     L++ +        + G       +                +
Sbjct: 883  LVLAALYESWSIPLA--VLLVMPLGLAGAAAGVTGRNLTELMLGGIPAFANDIYFQVGFV 940

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            T++G S  + +++ +  +    L     S  +   ++        + TS A  + V+P+ 
Sbjct: 941  TVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGVVPLY 997

Query: 788  VWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + GG+      +    + +G++V    S+F+     + +  +  + A
Sbjct: 998  IAGGASSASQRAIGTTVFWGMLVGTLLSVFLVPLFYVVVRKFFKETA 1044


>gi|239833390|ref|ZP_04681718.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ochrobactrum intermedium LMG 3301]
 gi|239821453|gb|EEQ93022.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ochrobactrum intermedium LMG 3301]
          Length = 1123

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/505 (12%), Positives = 141/505 (27%), Gaps = 31/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +    +  +P  +P   +                  
Sbjct: 72  RPVFAGVLSVLIFVAGLI-----GMTGLPISEYPEVVPPQIV---------VRAQYPGAN 117

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              ++  +    +E  + ++                +T++FA     +     V   +  
Sbjct: 118 PAVISETVATPLEEQINGVEGMLYMQSQATADGVMTLTVTFALGTDPDQAQQLVQNRISQ 177

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T        ++                   +    D+I       
Sbjct: 178 AEPRLPEEVRTLGVTTAKSSPDLTLVVHIISPDGRYDVNYLRNYAVLNVKDRIARIPGVG 237

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +   + + ++      N      + G          Q 
Sbjct: 238 QVQIFGGGDYSMRVWIDPQKAAERGLSASDIANAIRQQNVQAAAGVIGASPSVSGLDLQL 297

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 +    A      
Sbjct: 298 SVNAQGRL-------------QSPEEFANIVVKSGNEGEITRLGDVARVEMGAADYSLRS 344

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L   +            +     E      A L+          +     G    S   
Sbjct: 345 LLDNKLAVGMGVFQSPGSNALDISENVHAAMADLKKTMPEGVDFDIVYDTTGFVKASIES 404

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T A++ + G ++   S+ G+V
Sbjct: 405 VIHTLLEAIVLVVIVVILFLQTWRASIIPLVAVPVSIVGTFAVMYVFGFSINALSLFGLV 464

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +  +   V L F  
Sbjct: 465 LAIGIVVDDAIVVVENVERNIEQGLSPVEATYRAMQEVSGPIIAIALVLVAVFVPLAFIT 524

Query: 481 --GGGAVRGFAITMGLSILISMFTA 503
              G   R FA+T+ +S +IS F +
Sbjct: 525 GLTGQFYRQFALTIAISTVISAFNS 549



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 964  SLALPLSIIMIVPMGIMAALTGVWLTGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE-- 1021

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L  +         ++    L   + TSMA  + V+P+      G  +  +  I +  G+
Sbjct: 1022 -LELSGRGVVQAAVEASRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRSAMGIAVFAGM 1080

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +   +  IF+     + I     + 
Sbjct: 1081 IGVTAFGIFMTPVFYVLIRKLSGER 1105



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 81/232 (34%), Gaps = 17/232 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     +      G     +        +  +  + E V   I 
Sbjct: 332 RVEMGAADYSLRSLLDNKLAVGMGVFQSPGSNALDISENVHAAMADLKKTMPEGVDFDIV 391

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   ++   IV ++               W  ++  +  + + 
Sbjct: 392 YDTTGFVKASIESVIHTLLEAIVLVVIVVILFLQT-----------WRASIIPLVAVPVS 440

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+      +S  +   +
Sbjct: 441 IVGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI---EQGLSPVEATYR 497

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           ++ E  G  +  ++      +P+A      G     FA+ +A   V++A +S
Sbjct: 498 AMQEVSGPIIAIALVLVAVFVPLAFITGLTGQFYRQFALTIAISTVISAFNS 549


>gi|157413297|ref|YP_001484163.1| preprotein translocase subunit SecF [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387872|gb|ABV50577.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9215]
          Length = 304

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 119/242 (49%), Gaps = 9/242 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +    L  +R   ++    +     F    N L+ ++           ++  +   + 
Sbjct: 66  NFSPDSVLEKLRETSKNKNFLNNIKLQFQ-NNNKLISIRTPYLSIEESNNLINTLDNIVG 124

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +   S       +GPK+ + L+   +  +++S  A+ +YI IRF   +AL ++  L  D
Sbjct: 125 PLNYESKDSRL--IGPKLGKRLLINCVTSLLVSLFAISLYITIRFDKKYALFSLLALFHD 182

Query: 704 ITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +    G F+  GI    E N     ++LT+ GYSVND VV++DR+R+N+K  +    + +
Sbjct: 183 LVIVFGLFSWLGIILSVEVNSLFAVSLLTIAGYSVNDTVVIFDRIRENLK--SKKGGYNE 240

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            I+ S+NE+  R+ +TS+     +L + ++G   +  F++ ++ GI+V + SSI +A  +
Sbjct: 241 TIELSVNESFRRTTFTSITTLFPLLSIVLFGSYSLFWFSLALSLGIIVGSYSSILLAPSL 300

Query: 820 LL 821
           LL
Sbjct: 301 LL 302


>gi|15964179|ref|NP_384532.1| multidrug-efflux system transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|307301323|ref|ZP_07581085.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti BL225C]
 gi|15073355|emb|CAC41863.1| Probable multidrug-efflux system transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306903779|gb|EFN34366.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti BL225C]
          Length = 1061

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/505 (11%), Positives = 137/505 (27%), Gaps = 31/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +    +  +P  +P   +                  
Sbjct: 10  RPVFAGVLSVIIFVAGLI-----GMTGLPISEYPEVVPPQIV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PAVIAETVATPLEEQINGVEGMLYMQSQATADGLMTLTVTFELGTDPDQAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   +   
Sbjct: 116 GEPRLPEEVRRLGVTTVKSSPDLTLVVHLISPNGQYDINYLRNYGVLNVKDRLARVDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +     + ++      N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRVWIDPEKAAERGLAASDIANAVRGQNVQAAAGVIGASPSVPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                      +                 +    A      
Sbjct: 236 SVNAQGRL-------------KTPEDFADIVVKSGESGEITRLGDVARVEMGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     E    + A L+          +          S   
Sbjct: 283 LLDNKAAVGMGVFQAPGSNAIQISENVHKVMAELKQTMPDGVDYEIVYDTTQFVRASIES 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T A++ + G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVVVVIVFLQTWRASIIPLVAVPVSIVGTFAVMYVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNISQGLSPVQATYRAMQEVSGPIIAIALVLVAVFVPLAFIT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTA 503
              G   R FA+T+ +S +IS   +
Sbjct: 463 GLTGQFYRQFALTIAISTVISALNS 487



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 77/188 (40%), Gaps = 9/188 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S    +V+  +K+ + + V    + +T          +I   +  + +  + +++++   
Sbjct: 306 SENVHKVMAELKQTMPDGVDYEIVYDTTQFVRASIESVIHTLLEAIALVVVVVIVFLQTW 365

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N
Sbjct: 366 RASIIPL---VAVPVSIVGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           +   +  +S      +++ E  G  +  ++      +P+A      G     FA+ +A  
Sbjct: 423 I---SQGLSPVQATYRAMQEVSGPIIAIALVLVAVFVPLAFITGLTGQFYRQFALTIAIS 479

Query: 805 IVVAASSS 812
            V++A +S
Sbjct: 480 TVISALNS 487



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I   L    L G + N+     ++ L+G S  + +++ +  R+   L  +  +     
Sbjct: 915  MGIMAALTGVWLTGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE---LELSGSNAVSAA 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + TSMA  + V+P+      G  +  +  + +  G++   +  IF+   
Sbjct: 972  IEASRLRLRPILMTSMAFIMGVVPLVTSTGAGAEMRSAMGVAVFAGMIGVTAFGIFMTPV 1031

Query: 819  ILLFIYDWRAKN 830
              + I     + 
Sbjct: 1032 FYVLIRKLSGEK 1043


>gi|294669168|ref|ZP_06734249.1| inner membrane multidrug efflux protein BpeB [Neisseria elongata
           subsp. glycolytica ATCC 29315]
 gi|291308912|gb|EFE50155.1| inner membrane multidrug efflux protein BpeB [Neisseria elongata
           subsp. glycolytica ATCC 29315]
          Length = 1058

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 70/635 (11%), Positives = 174/635 (27%), Gaps = 48/635 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++      +    + ++PS                  + L    
Sbjct: 8   RPIFAWVIAIFIILAGVI-----GIRSLPVSQYPSVGAPT-------------ITLTAAY 49

Query: 63  DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTL 117
                  ++       +   + ++       +        ++L+F     +     +V  
Sbjct: 50  PGASAQVMEDSVLSVIERNMNGVEGLDYMTTNATSSGGGTVSLTFTPETDESFAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V + L    ++N +  +  +   +++   + D + +   E +  + R    +I   
Sbjct: 110 KLSEVTAMLPATVQQNGVTVSKSRSNFLMVLMMSSDTIGTE--EIADYVERNIKPEIQRI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L+    + A++S      N        G        
Sbjct: 168 DGVGEARLFGSQR-AMRVWVDPKKLQNYNLSMAEVSSAISTQNAQISAGSLGDLPNVPGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +    I          +      +       
Sbjct: 227 AITATITAEGQL-------------KTAEEFGNIIVRANTDGSNVYLKDVARVELGSQDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T          L+                     
Sbjct: 274 STSTRLNGKPAVGMAVMLSNKGNAMATATAVRERMDELQKFFPGDMKWDAPYDTSKFVSI 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + ++++   A L  LG ++ + ++
Sbjct: 334 SIKKVVQTLVEAILLVFVVMFLFLQNIRYTLIPTIVVPISLLGAFACLQYLGMSINVLTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +     S+    +       +   V 
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMSEEGLPPKEATKKAMSQISGAVIGITAVLISVFVP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L FF G +      FA TM ++I  S F A+S+  A+   +     +K I          
Sbjct: 454 LLFFTGASGKIYTQFAATMAIAIAFSAFFALSLTPALCATL-----LKPIPKGHHEEKKG 508

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   F +       +       ++ +L  +    G+       +        D   
Sbjct: 509 FFGWFNRTFSKGTHKYESVVAKVLKHAVPMLVVYAALGGVAVLLYKNIPDSFLPQEDQGS 568

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           +   ++          +        +  +    +S
Sbjct: 569 LMMMVQLPAGATKERTDATLATANEIITKMPEVES 603



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 82/255 (32%), Gaps = 24/255 (9%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V LS + +      +      N                   A   V  +V +        
Sbjct: 796  VPLSTIATAKWENGMEQSVRFNGYPSMKLEGVAASGYSTGQAMAEVKRLVDELEGGYSLE 855

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               Q+ E         L+        ++ +A+ + +   ++ W   L  I  + L     
Sbjct: 856  WAGQSREEAKGSSQTYLVY------GLAILAVFLVLAALYESWSIPLSVILVVPLGFLGV 909

Query: 708  L-------GFFALFGIEF----NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +       GF ALFG+      ++     ++T+IG S  + +++ +  +    L    + 
Sbjct: 910  VLGITGRNGFLALFGVPPQYLNDIYFQVGLITVIGLSAKNAILIIEFAKD---LQEQGMD 966

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSI 813
                  ++ +      + TS A  + V+P+    G+      +    +  G++V    S+
Sbjct: 967  AVKSALQAAHLRFRPIIMTSFAFILGVVPLFFASGASSASQRAIGTSVLSGMLVGTILSV 1026

Query: 814  FIAAPILLFIYDWRA 828
            F+     + I     
Sbjct: 1027 FLVPLFYVVIRKLFK 1041



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q    S +        +  +    G+++A    +     ++ +  
Sbjct: 256 SNVYLKDVARVELGSQDYSTSTRLNGKPAVGMAVMLSNKGNAMATATAVRERMDELQKFF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +      K     I+K +  ++ + + + + +++  +   + L     + + + 
Sbjct: 316 PGDMKWDAPYDTSKFVSISIKKVVQTLVEAILLVFVVMFLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GAFACLQYLGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMSEEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  +  +       +P+  + G+       FA  MA  I  +A  ++ +   +   
Sbjct: 434 SQISGAVIGITAVLISVFVPLLFFTGASGKIYTQFAATMAIAIAFSAFFALSLTPALCAT 493

Query: 823 IYD 825
           +  
Sbjct: 494 LLK 496


>gi|145298706|ref|YP_001141547.1| protein-export membrane protein SecD [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851478|gb|ABO89799.1| protein-export membrane protein SecD [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 621

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 141/517 (27%), Positives = 259/517 (50%), Gaps = 29/517 (5%)

Query: 21  IALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF 80
            A       S    + S +    I LGLDLRGGS L++ VD    V+   +   D LRS 
Sbjct: 120 SAALTLEFYSNAPTWISQLGAAPIKLGLDLRGGSQLLIGVDLSFVVDNQTRNLVDMLRSQ 179

Query: 81  LKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            ++  +   ++ R  + ++ +   +   +    + +               +    +  +
Sbjct: 180 FREARLRGANVARVSEGEVRVILPEVADQAPWLNIIKDAA--------GTRQDQWTLNRS 231

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             E+ +V+S+     + ++A+ Q++ I+++RI+++GI E+++QR G   I I+LPG  +P
Sbjct: 232 GNELRLVMSEAERTLLANNAVTQNLSILKKRINELGIVEASVQRQGQDGIRIELPGVHNP 291

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
            + ++++G TA ++F++  P +          F+ D +G    +  K  ++G H+  A A
Sbjct: 292 KQAKEVIGATASLAFYQAQPESRF--------FMADRNGQAVGMARKPVLTGEHIVDARA 343

Query: 260 NFDPKTHKPVVDISFDEMGARR-----------FFEVTRDNIGKPLAVVLDGRVLTAPVI 308
                    V  +     G++               V  +        +     +     
Sbjct: 344 GMGEMGQPQVSIVLDTLGGSKMNQFSRQHVGSAMATVFTEYKTNAQGKLRAQSEVINVAT 403

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q     + +I+G  ++  A  LA +LRAG+L   L I+EER++G  LG  +I  G  A+
Sbjct: 404 IQTALGNQFRITGLASVPEAQELAMLLRAGALTAPLKILEERSIGPTLGLQNIEAGFTAL 463

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
             G+  ++LFM+  Y K+G VA  ++  N+++ + +L++L  A LTLP IAG+VL +G+A
Sbjct: 464 AFGMAGMMLFMMAWYRKFGWVAITALIANLLMQVGMLAVLPGAVLTLPGIAGLVLTVGMA 523

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+++L+ ERI++  R+  S+  ++D G+  A+ TIFD+NIT LI  VVL+  G G ++G
Sbjct: 524 VDTHVLIFERIKDRLREGGSLANAIDFGYRSAFRTIFDANITTLICAVVLYSIGSGPLQG 583

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           F+IT+ L ++ SM T I   RA++  +      K + 
Sbjct: 584 FSITLILGLISSMVTGIWGTRAIINPLWGKSSAKLLR 620



 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 33/180 (18%), Positives = 76/180 (42%), Gaps = 6/180 (3%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  + I  G   +      M++++   ++  F   AIT LI ++   +G  A+  
Sbjct: 446 SIGPTLGLQNIEAGFTALAFGMAGMMLFMMAWYR-KFGWVAITALIANLLMQVGMLAVLP 504

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  ++      S  + ID            
Sbjct: 505 GAVLTLPGIAGLVLTVGMAVDTHVLIFERIKDRLRE---GGSLANAIDFGYRSAFRTIFD 561

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL-FIYDWRAKNARI 833
            ++   I  + +   G   +  F+I +  G++ +  + I+    I+        AK  R+
Sbjct: 562 ANITTLICAVVLYSIGSGPLQGFSITLILGLISSMVTGIWGTRAIINPLWGKSSAKLLRV 621


>gi|315638626|ref|ZP_07893800.1| RND efflux system, inner membrane protein CmeB [Campylobacter
           upsaliensis JV21]
 gi|315481250|gb|EFU71880.1| RND efflux system, inner membrane protein CmeB [Campylobacter
           upsaliensis JV21]
          Length = 1041

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 81/674 (12%), Positives = 184/674 (27%), Gaps = 35/674 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++P+  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAIS-----LSSLPVEQYPTLTPPTV---------SVSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQG 121
              ++  + +  ++  + ++       +     Q ++T  F            V   +  
Sbjct: 55  AQTISESVAIPIEDAINGVENMIYLESTSSASGQMRLTAYFDIGTDPNQATVDVNNRISS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +KL    KK  +         + +          +A++    I    ID I       
Sbjct: 115 ATAKLPEAVKKLGVTVRKSNSSILEVIALYSTDGSMNAVDIYNYITLNIIDDIKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+ L +   T+ ++       N        G   +       Y
Sbjct: 175 DAFAIGNRNYSMRVWLDPNLLNKYQITSKEVLSAIEEQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +               + +    I                +I       +   
Sbjct: 235 SITMQGRL-------------KSSQEFGEVILRVNEDGSFLRLKDVADIELGSQQYVAQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I + ++  +   T +  G     L           V          S   
Sbjct: 282 RYDGNDAVPIIINLQSGANSVNTAKLVGEKLEELSKNFPAGLAYQVPYDTTTFVKASIYE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ ++++ T A L LLG ++ L ++  +V
Sbjct: 342 VLKTFVEALILVIIVMYLFLKNFRSTLIPMIAVPVSLLGTFAGLYLLGFSVNLLTLFALV 401

Query: 422 LGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVV 476
           L IG+ VD  I+V E +        N SV  +  +      S    I        I    
Sbjct: 402 LAIGIVVDDAIIVVENVDRILHEDPNISVKDATIIAMEEVASPVISIVLVLCAVFIPVSF 461

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +  F G   + FA+T+ +S+ IS F A+++  ++    ++    +          F    
Sbjct: 462 ISGFVGEIQKQFALTLAISVAISGFVALTLTPSLCALFLKRNNGEPFIFVKKFNDFFDWS 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                   A      +  +     +     +            +        ++L    S
Sbjct: 522 TKIFSAGVAYILKRVVRFIMIFGIMLGGTYYLYQSVPSSLVPTEDQGTVMSIINLPAASS 581

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              ++   D   +N     N +       G  +      E       ++           
Sbjct: 582 LHRTIDFIDNMSKNDIDGLNGVKASMALIGFDLFTNSPKENAGAMFIQLEDW--ADRNVS 639

Query: 657 VGPKISRELIRKGI 670
               +    I+   
Sbjct: 640 SFEIVQNLNIKNAF 653



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 87/243 (35%), Gaps = 13/243 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +SV   +++    +++++  P     
Sbjct: 266 DVADIELGSQQYVAQGRYDGNDAVPIIINLQSGANSVNTAKLVGEKLEELSKNFPAGLAY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 QVPYDTTTFVKASIYEVLKTFVEALILVIIVMYLFLKNFRSTLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   NL  + A++  IG  V+D ++V + +   +     +IS +D    ++ E    
Sbjct: 386 YLLGFSVNLLTLFALVLAIGIVVDDAIIVVENV-DRILHEDPNISVKDATIIAMEEVASP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + +       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFIPVSFISGFVGEIQKQFALTLAISVAISGFVALTLTPSLCALFL 500

Query: 825 DWR 827
              
Sbjct: 501 KRN 503



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 74/205 (36%), Gaps = 10/205 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALG 695
             V +++T+                        G +  ++  I + + +  ++ +W   L 
Sbjct: 837  AVMEELTKEFLGEEYTLAWSGTSYQEATNSNTGSIAFVLGMIFVFLILAAQYERWLMPLA 896

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             IT +   +  +L F  L     ++     +L LIG S  + +++ +   +         
Sbjct: 897  VITAVPFALFGSLLFIWLRDFYNDVYFQTGLLLLIGLSAKNAILIVEFAMEE--HLKKGK 954

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
            S  D   ++        V TS+A  + +LP+ +    G +   +    +  G++ A++ +
Sbjct: 955  SIFDASVEAAKLRFRPIVMTSLAFTLGILPLVISSGAGSAARHALGTGLIGGMIAASTLA 1014

Query: 813  IFIAAPILLFIYDWR----AKNARI 833
            IF        +  +      K  ++
Sbjct: 1015 IFFVPLFFYLLESFNAWLDKKRGKV 1039


>gi|262384500|ref|ZP_06077634.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262293793|gb|EEY81727.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 1045

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 76/688 (11%), Positives = 186/688 (27%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + ++P   P               + +    
Sbjct: 8   RPIFATVLALIIVVAGLVT-----LNILPIAQYPEITPPT-------------VQVSAVY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +     V  
Sbjct: 50  PGADAQTVAQTVGLPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVMVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        + T  +    +++   +    I   +  S       IDQ+   
Sbjct: 110 RVSIAQSSLPEPVIVQGITTRKQSSNIVMMLTLSSKDSIYDGLYLSNYATLNMIDQLTRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP  +R    T   +       N        G   LR  +
Sbjct: 170 PGVGSVQVMGAGNYSMRIWLDPEAMRIRNLTPDMVYQAISTQNAQVSAGYVGQPILRADN 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  ++                +    +     G +         I    +  
Sbjct: 230 PYQYTLTVKGRLT-------------TPDEFGNIVLKTGQGGKILRLKDIARIELGSSSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L+               +     +        L +         V          
Sbjct: 277 NVVSKLSGQPTAAIAIYQLPGSNSLDVSKVVKAKMKELGSSLPEGVEYKVTLDTTEVIDA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  ++   +I +++I TLA+++ LG ++   ++
Sbjct: 337 SIHEVLITFLETTLLVVLVIFLFLQNFRAVVIPFITIPVSLIGTLAVMAALGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L I + VD  I+V E           +   ++          I    +  L   + 
Sbjct: 397 FGLILAIAVVVDDAIVVVENSTRLLDTGKYTAHEAVSKAMDEIVGPIVGVVLVLLAVFIP 456

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDIN 526
             F  G +    + FA+T+  + ++S F ++++  ++    +            K  +  
Sbjct: 457 TTFISGISGQLYKQFALTIAAATVLSGFNSLTLTPSLCALFLEKNTEEPKFFLFKGFNKV 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R     +   I+ ++  I  +         +  G   +     
Sbjct: 517 YGKTQKMYDSIVERMLKRPGAAMIVYGIITAVAVILFMRWPTTFIPEEDDGYFLIVSQLP 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L+   +  + +     ++       +         G+         ++K       
Sbjct: 577 PAASLNRTEAVTKQIDEILKTYPEVKSFISVSGFSVMGGGEQSNTATFFVILKNWNERKG 636

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T +       + +  +    + G++
Sbjct: 637 KEHTAEAVTNRFNREASAIQEAQVFGMV 664



 Score = 39.3 bits (89), Expect = 3.2,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 96/245 (39%), Gaps = 8/245 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          ++  +        +   Q    +S+  ++V++   K++   +P     
Sbjct: 265 DIARIELGSSSYNVVSKLSGQPTAAIAIYQLPGSNSLDVSKVVKAKMKELGSSLPEGVEY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
              +   ++    I + ++  + + + +++ I++  + +   +    T+ + +  TL   
Sbjct: 325 KVTLDTTEVIDASIHEVLITFLETTLLVVLVIFLFLQNFRAVVIPFITIPVSLIGTLAVM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDLIDKSINETLG 770
           A  G   N   +  ++  I   V+D +VV +    + +L  T   +  + + K+++E +G
Sbjct: 385 AALGFSINTLTLFGLILAIAVVVDDAIVVVEN---STRLLDTGKYTAHEAVSKAMDEIVG 441

Query: 771 RSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V   +      +P   + G  G +   FA+ +A   V++  +S+ +   +     +  
Sbjct: 442 PIVGVVLVLLAVFIPTTFISGISGQLYKQFALTIAAATVLSGFNSLTLTPSLCALFLEKN 501

Query: 828 AKNAR 832
            +  +
Sbjct: 502 TEEPK 506


>gi|183222733|ref|YP_001840729.1| acriflavin resistance protein B [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|167781155|gb|ABZ99453.1| Multidrug resistance protein, RND family, putative acriflavine
           resistance protein B; putative membrane protein
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 1069

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/576 (11%), Positives = 158/576 (27%), Gaps = 41/576 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  ++  +GL+           + +FP   P               + + +
Sbjct: 6   LQRPVLAIVISVLVVFVGLISI-----KNIPVSQFPEIAPP-------------RVTITL 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKV 115
                     +Q     L   +        +   S       I + F       +   +V
Sbjct: 48  SFPGASAQVLVQSTITTLEQAINGVAGMRYMISSSTSSGDAIIQVLFEPGTNPNDALVQV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +  +  ++    +   +     +   ++          +             + ++ 
Sbjct: 108 KTRVDQMMYRVPELVRLEGIFVQPVQPSMLLYVNLYSKDPNASEKFLYNYATVFLLPELK 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 Q          +    +P R+R    TTA++       +   +    G    + 
Sbjct: 168 RIHGIGQAKILGTRQYAMRVWLNPDRMRAYNVTTAEVMKAIENQSIIARPGRLGQSSGKQ 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +   +Y +                 +  +  +    I   + G    +      +     
Sbjct: 228 AQSLEYTLT-------------YEGWFNEPGQYENIIIRAKNGGELLYLKDISKVELDSE 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +        +       +    IE        L+    P     +        
Sbjct: 275 FYNIYSDVDGHPAAAIMFKQTEGSNAKDVIEDIKAKLEELKQTFPPEMDYKLSYDVSNFI 334

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      T      LV IV+F+ +   +  L+   ++ +++I   + +  LG T+ L 
Sbjct: 335 DAAIEKVIHTLIEAFVLVAIVVFIFLGDWRSTLIPIIAVPVSLIGAFSFMMALGLTINLI 394

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQS----VFCSLDMGFSRAYSTIFDSNITAL 471
           ++  +VL IG+ VD  I+V E +  +  ++         ++    S A   I        
Sbjct: 395 TLFAMVLAIGIVVDDAIVVVEAVHAKMAEDHLSVYFSVKAVLGEISGAVIAITLLMTAVF 454

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF-IIRYKKMKSIDINPLSR 530
           +    L    G   R FAITM  SI++S   A+++   +    +  +   K         
Sbjct: 455 VPVTFLPGPVGVFYRQFAITMATSIVLSGLVALTLTPVLTAMILKPHSHHKKARNPIDLF 514

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
                    I   R        S         LLF 
Sbjct: 515 LEKFNFYFEIVTDRYVNLMKRFSGSKVFIVSLLLFF 550



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 103/274 (37%), Gaps = 13/274 (4%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
              +  +      + + A    +L  ++   +     +      D + +    + ++  +
Sbjct: 237 YEGWFNEPGQYENIIIRAKNGGELLYLKDISKVELDSEFYNIYSDVDGHPAAAIMFKQTE 296

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYI 684
                 V+E +K K+ E+      +    +   +S  +   I K I  +I + + + I +
Sbjct: 297 GSNAKDVIEDIKAKLEELKQTFPPEMDYKLSYDVSNFIDAAIEKVIHTLIEAFVLVAIVV 356

Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +I    W   L  I  + + +     F    G+  NL  + A++  IG  V+D +VV + 
Sbjct: 357 FIFLGDWRSTLIPIIAVPVSLIGAFSFMMALGLTINLITLFAMVLAIGIVVDDAIVVVEA 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFA 798
           +    K+    +S    +   + E  G  +  ++   +    +P+    G V      FA
Sbjct: 417 VH--AKMAEDHLSVYFSVKAVLGEISGAVI--AITLLMTAVFVPVTFLPGPVGVFYRQFA 472

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           I MA  IV++   ++ +   +   I    + + +
Sbjct: 473 ITMATSIVLSGLVALTLTPVLTAMILKPHSHHKK 506



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 73/246 (29%), Gaps = 13/246 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V  S   +  +     +I+  N        V              + E+ K       
Sbjct: 795  EMVPYSSFMTLEQKQGANEITRYNAYTSSVINVLPSDGYTTGDVIKAIREVSKTLPKGFE 854

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                  + +              I   I+  + + + +  +++ +      I +L   I 
Sbjct: 855  VGWEGLSYDEASRGNE------AIYIFIVVIVFVYLVLSAQYESFIIPFSVIFSLPPGIF 908

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G+  ++ A   ++ LIG    + V++ +  R   +     +S  D   +  
Sbjct: 909  GSFFLLRLLGLANDIYAQIGMIMLIGLLGKNAVLIVEFAR---QRQEAGLSVFDAALEGA 965

Query: 766  NETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS A    ++P+ V  G   I   +       G++      + +   + + 
Sbjct: 966  KARFRPILMTSFAFIAGLIPLVVATGPGAIANHTIGACALGGMLFGTIFGVIVVPGLYII 1025

Query: 823  IYDWRA 828
              +   
Sbjct: 1026 FANIAK 1031


>gi|78189170|ref|YP_379508.1| hydrophobe/amphiphile efflux-1 HAE1 [Chlorobium chlorochromatii
           CaD3]
 gi|78171369|gb|ABB28465.1| Hydrophobe/amphiphile efflux-1 HAE1 [Chlorobium chlorochromatii
           CaD3]
          Length = 1055

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/642 (10%), Positives = 168/642 (26%), Gaps = 41/642 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G++      L Q  + RFP   P +                    
Sbjct: 8   RPVLATVISILLVILGVV-----GLSQLPVTRFPDIAPPSV---------SVSATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +E+ + ++       +     +  I++ F      +  A  V   +  
Sbjct: 54  AETVARSVAPPLEEVINGVENMTYMTSTSSNDGSLNISVFFKQGTNPDQAAVNVQNRVSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +  +  + T   +   I+L            +          +D +       
Sbjct: 114 ATSRLPAEVNQIGVSTVKRQNSQIMLINLASTNPEYDVVFLQNYAKINLVDDLSRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +   +     P  +     T  ++       N       FG            
Sbjct: 174 QVSVYGNLDYSMRIWLKPQVMAAYSITPQEVLSAIQSQNFEAAPGSFGENSNEAMQ---- 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                               +    +    +                 +           
Sbjct: 230 ------------YVMRYKGKNRYPVEYEQMVIRAGEDGTLLRLGDVARVEFGAYRYGVNT 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             + N    +   +   +           +   +      S + 
Sbjct: 278 KANGLPAVVLAIFQAPGSNANAVESSLQKVLQKVSPTFPKGITYSIPYSSKKVVDESITQ 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  L+   ++ + ++ TL  + L G ++ + ++ G+V
Sbjct: 338 VLHTLIEAFLLVFLVVFIFLQDLRSTLIPAIAVPVALVGTLFFMKLFGFSINVLTLFGLV 397

Query: 422 LGIGLAVDSNILVNERIR-EENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVL 477
           L IG+ VD  I+V E +  +  +K      +        ++A  TI     +  +    L
Sbjct: 398 LAIGIVVDDAIVVVEAVHAKMEQKGYGAKVATVSAMRDITKAIVTITLVMSSVFLPAGFL 457

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRF 531
               G   R FA T+ ++IL+S   A+++  A+    +  +        +       +  
Sbjct: 458 EGSTGVFYRQFAFTLAIAILLSALNALTLSPALCALFLEKEHRHSSIGKRFFTSFNTAFE 517

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            +    +       R   V  S L  + ++                     +++      
Sbjct: 518 AMKRKYLGALLYLLRHKKVAYSGLALLTALSFWMFKATPTAFIPDEDNGFVIVSATMPPG 577

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +        +     + Q     K  +           +   
Sbjct: 578 ASFARTKVVMDDAARTLQAMPTVKKVIEVAGINILTRTSSPS 619



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/279 (16%), Positives = 102/279 (36%), Gaps = 16/279 (5%)

Query: 569 LNYGIDFKGGIQLGVLANRPVD----------LSVVRSNLESLQIGDISFQNFDGEKNFL 618
           + Y + +KG  +  V   + V           L  V           ++ +        L
Sbjct: 228 MQYVMRYKGKNRYPVEYEQMVIRAGEDGTLLRLGDVARVEFGAYRYGVNTKANGLPAVVL 287

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              Q    ++ A    L+ V +K++   P     +      K+  E I + +  +I + +
Sbjct: 288 AIFQAPGSNANAVESSLQKVLQKVSPTFPKGITYSIPYSSKKVVDESITQVLHTLIEAFL 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + + ++I        L     + + +  TL F  LFG   N+  +  ++  IG  V+D 
Sbjct: 348 LVFLVVFIFLQDLRSTLIPAIAVPVALVGTLFFMKLFGFSINVLTLFGLVLAIGIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    K+       +     ++ +     V  ++      LP     GS     
Sbjct: 408 IVVVEAVH--AKMEQKGYGAKVATVSAMRDITKAIVTITLVMSSVFLPAGFLEGSTGVFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FA  +A  I+++A +++ ++  +     +   +++ I
Sbjct: 466 RQFAFTLAIAILLSALNALTLSPALCALFLEKEHRHSSI 504



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 45/152 (29%), Gaps = 6/152 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
             +   +   +   L  + ++   +        L GI  N+    A++ LIG    + +++
Sbjct: 880  FLLAALYESYLLPLAVMLSIPTGLLGVFIGIKLAGIANNIYVQVAIIMLIGLLAKNAILI 939

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---F 797
             +     ++             +     L   + TS A    +LP+    G         
Sbjct: 940  VEFA---LQRRIAGRPLAVAAIEGARARLRPILMTSFAFMAGLLPLLFVSGPAAQGNHSI 996

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                  G+       I +   + +     + +
Sbjct: 997  GAAALGGMFAGLVFGILVVPLLFVTFQYLQER 1028



 Score = 38.1 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 44/443 (9%), Positives = 112/443 (25%), Gaps = 29/443 (6%)

Query: 80   FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
             +    I   +       + +   D          +   +  ++ KL        ++   
Sbjct: 605  EVAGINILTRTSSPSSGLLFVQLQDH-NVRGKQGDIKNVIGAMSKKLANREASFFVLAQP 663

Query: 140  EKEISIVLSQNNIDQVISHAIEQS--MEIIRQRIDQIGISESTIQR-LGSHRILIQLPGE 196
                   +    +     + +E S   EI +  ++ +    +             Q   E
Sbjct: 664  TVPGFSTVGGLELVLQDRNGVELSRFNEIAQNFLNGLRQHPAIGVAFTNFKANNPQYELE 723

Query: 197  QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
             DP +  QL  +T  +         S +   F           Q    ++ + S      
Sbjct: 724  VDPMQASQLGVSTRDVMSVLQAYYGSVQVSDFNRFGKYYRVIMQAEPSERTDESS----- 778

Query: 257  ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316
                        +  +    +        +   + +   V           I+    +  
Sbjct: 779  ------------INSMFIRNVRGDMVPLSSVVRLKRVYGVEAVDHFNLFNAISVNAVAKP 826

Query: 317  AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
               +G    +    +  + R           + ++      S  +       +  +  ++
Sbjct: 827  GFSTG----QAIQAVDDVARKTLPTGFTYDWKGQSREEISASGGLLLIFLLSIIFVYFLL 882

Query: 377  LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
              +   Y     V   SI   ++     + L G    +     I++ IGL   + IL+ E
Sbjct: 883  AALYESYLLPLAVML-SIPTGLLGVFIGIKLAGIANNIYVQVAIIMLIGLLAKNAILIVE 941

Query: 437  RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV-LFFFGG--GAVRGFAITMG 493
               +     + +  +   G       I  ++   +   +  LF  G              
Sbjct: 942  FALQRRIAGRPLAVAAIEGARARLRPILMTSFAFMAGLLPLLFVSGPAAQGNHSIGAAAL 1001

Query: 494  LSILISMFTAISIVRAMMIFIIR 516
              +   +   I +V  + +    
Sbjct: 1002 GGMFAGLVFGILVVPLLFVTFQY 1024


>gi|114562157|ref|YP_749670.1| preprotein translocase subunit SecD [Shewanella frigidimarina NCIMB
           400]
 gi|114333450|gb|ABI70832.1| protein-export membrane protein SecD [Shewanella frigidimarina
           NCIMB 400]
          Length = 603

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 157/509 (30%), Positives = 259/509 (50%), Gaps = 33/509 (6%)

Query: 32  LDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
               P  +       I LGLDLRGG   +L+VD D        + SD ++ F++++ I  
Sbjct: 111 APAAPDWLLNLGVKPIKLGLDLRGGVQFLLDVDLDLVFQNQAVLVSDAVKQFVREQHISG 170

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             +R            +   ++   ++  F+     +  V   +  L     +   + L+
Sbjct: 171 VMVRFGTGA---ELTVNSASDDARGQIRQFIGQQYPQWQVTGHQQTLSINLSQSEQLKLT 227

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                      ++Q+++I+R RI+++GI+E+ +QR G +RI I+LPG QDP+  + ++G 
Sbjct: 228 NL--------TVQQNLQIMRSRIEELGITEALVQRQGENRIRIELPGVQDPATAKNVIGA 279

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           TA ++F+ V+              + D       V  K  + G H+  A A         
Sbjct: 280 TASLAFYPVVQ-----ADSLYAVVMNDEQNKPVYVSKKPVLGGDHIIDARATTGDFGM-A 333

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPSGK 316
            V+IS D  G +   + +RDNIGKP+A                          Q+    +
Sbjct: 334 KVNISLDAAGGKLMSDFSRDNIGKPMATAYSEYSRDQQGKAKQTTKIISVATIQSQLGNR 393

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
            +I+G  + + A  LA +LRAGS+   + IVEER +G  LG+++I  G  A+  GL   +
Sbjct: 394 FEITGAGSHQEAQQLALLLRAGSMTAPVTIVEERTIGPSLGAENIVNGFAALALGLSATL 453

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVN 435
           LFM   Y + G VA+ ++  N+++   LL+L+  A LTLP IAG+VL +G+AVD+N+L+ 
Sbjct: 454 LFMACWYRRLGWVANVALIANLVMLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIF 513

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERI+E+  + +S   ++D+GF  A+STIFD+N T +I  VVLF  G G ++GFA+T+GL 
Sbjct: 514 ERIKEKLAEGRSFASAIDVGFDSAFSTIFDANFTTMITAVVLFSIGNGPIQGFALTLGLG 573

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +L SMFT I   RA++  +      ++I 
Sbjct: 574 LLTSMFTGIFASRALINLVYGRDTRRAIK 602



 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 89/241 (36%), Gaps = 5/241 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    + +          +    ++ L       G    Q      +  +   +    TI
Sbjct: 364 SEYSRDQQGKAKQTTKIISVATIQSQLGNRFEITGAGSHQEAQQLALLLRAGSMTAPVTI 423

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                +GP +  E I  G   + +   A L+++   ++      A   LI ++    G  
Sbjct: 424 VEERTIGPSLGAENIVNGFAALALGLSATLLFMACWYR-RLGWVANVALIANLVMLFGLL 482

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           AL  G    L  +A ++  +G +V+  V++++R+++ +       SF   ID   +    
Sbjct: 483 ALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKEKLAE---GRSFASAIDVGFDSAFS 539

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                +    I+ + +   G   I  FA+ +  G++ +  + IF +  ++  +Y    + 
Sbjct: 540 TIFDANFTTMITAVVLFSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINLVYGRDTRR 599

Query: 831 A 831
           A
Sbjct: 600 A 600


>gi|307308373|ref|ZP_07588078.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti BL225C]
 gi|306901174|gb|EFN31781.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti BL225C]
          Length = 1044

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/623 (11%), Positives = 165/623 (26%), Gaps = 44/623 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++   G L        Q  + +FP   P               + +    
Sbjct: 10  RPRLATVIAVVMAIAGALALF-----QIPIAQFPQITPPE-------------VQVTASY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+      +   +   E +   S     N    +T++FA           V  
Sbjct: 52  PGANASVLEESVGAPIEDQVNGVEDMLYMSSSSTNNGTYSLTVTFAVGTDPALAQVNVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L     +  +         ++       +     I  S        D I   
Sbjct: 112 RVALATPRLPASVTQTGVSVRARSSSMLMGVAIYSPEGTRDEIFISNYAANNIRDAIARV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P R++ L  T   ++      N        G        
Sbjct: 172 AGVGEAGIFG-PSYSMRIWMNPDRMQALGLTATDLTSAIQAQNAQASAGQLGSPPATSGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                     I                 +       
Sbjct: 231 QLQLTIMAQGRLATEE-------------DFSNIIVRTNTEGALVRLRDVARVELGAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +    A+ +              L           +          
Sbjct: 278 DTASTFNGQPSATVVVYQSAEANALAVSRAVLSELDRLSRQFPEDVAYAIVFDTTAFITE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T AI   LV+ V +  +   +  ++   +I +++I   A+L LL  +    ++
Sbjct: 338 TIKEIAITLAITFALVVAVTYFFLQDWRATVIPTLTIPVSLIGGFAVLYLLDYSANTITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L I L VD  I+V E ++     +  +V  +     S+    I  + +      V 
Sbjct: 398 FAVILAISLVVDDAIIVVENVKRLMAEERLNVHDATRRTMSQVTGPIVATTLVLAALFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSR 530
           + F     G   R F++T+ ++I  S   A+++  A+ + ++R  + +            
Sbjct: 458 IAFVAGITGQLYRQFSVTILITITFSTINALTLSPALCVLMLRSPREQRSGIFGTFNRGL 517

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            F     +A+    +R   +   IL +I          L  G           +  +  +
Sbjct: 518 DFSRNWYVAMLDRMSRQLWIASVILLAILGGVYGLFRALPTGFVPSEDQGYLFINVQLPN 577

Query: 591 LSVVRSNLESLQIGDISFQNFDG 613
            + +    ++L       Q   G
Sbjct: 578 AASLERTQQALDTVSRILQRTPG 600



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 65/167 (38%), Gaps = 9/167 (5%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              +I+    +  Y+++      W   L  + ++ + +   L    L  I+ N+ A   ++
Sbjct: 869  TALILLMGLIFTYLFLVGQYESWSVPLAVMLSVAVAVLGALVGLMLASIDINIYAQIGLV 928

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG +  + +++ +  ++        ++  +       +     + T+MA+ + V+P+ 
Sbjct: 929  LLIGLAAKNAILIVEFAKE---RRDKGMATPEAAAAGTAQRFRPVLMTAMASILGVIPLV 985

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    G     +  + +  G++V     + +     + +   R +  
Sbjct: 986  IATGAGAGSRRAIGMTVFGGLLVGTVVGLLLIPVFYVLVQTVREQAK 1032



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 83/280 (29%), Gaps = 9/280 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S   +      L           +    + V  N    L  +R                 
Sbjct: 223 SPPATSGQQLQLTIMAQGRLATEEDFSNIIVRTNTEGALVRLRDVARVELGAQSYDTAST 282

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-V 671
                   +            V   V  ++  +           +    +  +      +
Sbjct: 283 FNGQPSATVVVYQSAEANALAVSRAVLSELDRLSRQFPEDVAYAIVFDTTAFITETIKEI 342

Query: 672 GVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            + ++    L+     F    W   +    T+ + +        L     N   + AV+ 
Sbjct: 343 AITLAITFALVVAVTYFFLQDWRATVIPTLTIPVSLIGGFAVLYLLDYSANTITLFAVIL 402

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            I   V+D ++V + +++ M      ++  D   +++++  G  V T++      +P+A 
Sbjct: 403 AISLVVDDAIIVVENVKRLMAEE--RLNVHDATRRTMSQVTGPIVATTLVLAALFVPIAF 460

Query: 789 ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G +   F++ +   I  +  +++ ++  + + +  
Sbjct: 461 VAGITGQLYRQFSVTILITITFSTINALTLSPALCVLMLR 500



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 68/549 (12%), Positives = 152/549 (27%), Gaps = 60/549 (10%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M    W+  +  +    G+           +       +               ++ L  
Sbjct: 531  MSRQLWIASVILLAILGGVYGLFRALPTGFVPSEDQGYLF-------------INVQL-- 575

Query: 61   DEDDFVNGFLQMYSDELRSFL-------KKEGIGVFSMRQIQNK-----ITLSFADSR-- 106
              +       Q   D +   L          GI   SM           IT         
Sbjct: 576  -PNAASLERTQQALDTVSRILQRTPGVANSVGIAGNSMVGGGGSNAGMVITALKPWGERR 634

Query: 107  FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
              E   D +   L+    ++                 +       +      + +   E+
Sbjct: 635  SAEESIDAIMNRLRAEFGRIPTASVVPFNPPAIPGLGTTGGFDLRLQARSGQSQQGIAEV 694

Query: 167  IRQRIDQIGISESTIQRLGSHRILIQLPGE-QDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
            +R  I +   +        +    +       D  R      +TA +         S   
Sbjct: 695  MRGLIVKANQTPGLASVFSTFSADVPQVFLNVDRRRAELFGVSTATIFNAMQSHLGSSYV 754

Query: 226  FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
              F +         Q   + +  I  I      +          +       G       
Sbjct: 755  DDFNIFSRVYQVRIQDEPQFRSRIEDIQRLRVRSRNGELVPLQSLLSISTSYG------- 807

Query: 286  TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
                       +    +  +  IN    +G +      T+ +          G     L 
Sbjct: 808  --------PTAINRYNLFPSASINGQAATGTSTGQALATMASLAEQNLPEGFGFEWTGLA 859

Query: 346  IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            + EE+         +  +    ++ GL+   LF++  Y  W +     + + V +  AL+
Sbjct: 860  LQEEQ---------AGNQTALILLMGLIFTYLFLVGQYESWSVPLAVMLSVAVAVLGALV 910

Query: 406  SLLGATLTLPSIA--GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
             L+ A++ +   A  G+VL IGLA  + IL+ E  +E   K  +   +   G ++ +  +
Sbjct: 911  GLMLASIDINIYAQIGLVLLIGLAAKNAILIVEFAKERRDKGMATPEAAAAGTAQRFRPV 970

Query: 464  FDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              + + +++  + L      G G+ R   +T+   +L+     + ++    + +   ++ 
Sbjct: 971  LMTAMASILGVIPLVIATGAGAGSRRAIGMTVFGGLLVGTVVGLLLIPVFYVLVQTVREQ 1030

Query: 521  KSIDINPLS 529
                     
Sbjct: 1031 AKERFFRTR 1039


>gi|319947805|ref|ZP_08021999.1| preprotein translocase subunit SecF [Dietzia cinnamea P4]
 gi|319438529|gb|EFV93455.1| preprotein translocase subunit SecF [Dietzia cinnamea P4]
          Length = 352

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/299 (19%), Positives = 127/299 (42%), Gaps = 11/299 (3%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R     ++++     +  +   G  +GIDF GG +L + A       V     ES+   
Sbjct: 38  NRRKFYVLTVVIVAICLASIIFRGFTFGIDFTGGTKLSMPAGNHDQDRVAAVVEESIGEE 97

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL----STIQNTEIVGPK 660
             + Q        +V ++ +   S         + ++   +                   
Sbjct: 98  PQTVQVVGAGDARIVEVETRFLTSDEIRAAKNAMFEEFQPVTADGVASVEAIGDSARSES 157

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
              ++ +  ++ + +  + +  YI  RF+W  A  AI  L+ D+  T G +++ G E   
Sbjct: 158 WGGQVTQNALIALGVFLVIVFGYIAFRFEWQMATAAIVALLFDVVTTAGVYSIIGFEVTP 217

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSMA 778
             V  +LT++G+S+ D V+V+D++ +N +      + ++ +  +  +N+TL RS++T++ 
Sbjct: 218 ATVIGLLTILGFSLYDTVIVFDKVEENTRGIRHTATRTYAEEANLGVNQTLMRSIHTTII 277

Query: 779 AFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             + +L +      + G   +   A+    GIV    SS+F+A P+L+ + +      R
Sbjct: 278 GVLPLLALVVIAVWILGVGTLLDLALVQMVGIVTGTFSSVFLATPLLVSLKNRDPDIRR 336


>gi|254497410|ref|ZP_05110209.1| RND multidrug efflux transporter MexF [Legionella drancourtii
           LLAP12]
 gi|254353366|gb|EET12102.1| RND multidrug efflux transporter MexF [Legionella drancourtii
           LLAP12]
          Length = 1061

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/688 (9%), Positives = 177/688 (25%), Gaps = 32/688 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G++           + ++P+ +P               + +    
Sbjct: 9   RPILANVIALLLVLLGMVAIAV-----LPVAQYPAIVPPT-------------IQVTTTY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +   E +         +    + ++FA           V  
Sbjct: 51  PGADAKTLINTVALPIEQQVNGVEKMLYMQSTSTDSGSYTLIVTFAIGTDLNFAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   ++L    +K  +V   +    +       +      +           D++   
Sbjct: 111 RVQAAMAQLPESVQKQGVVVQQKSTAILQFITLTSENGKYDGLFLDNYAAINMQDELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 L        +    DP ++       + +       N               + 
Sbjct: 171 PGVGNVLIFGTGTYAMRVWLDPQKMLSYALNPSDVLNAISRQNQEVSAGQIAAPPTSGAQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V    + +              T       +     A+         +    +  
Sbjct: 231 PYQFTVNVPGQRANQEEFADIIIKTIATQPNES--ANGSSSAKIVRIRDVGRVELGSSSY 288

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A +     P     V          
Sbjct: 289 SQLAKLNNKPTAAIGIYQLPGANALQVAKEVRATVAEMAKKFPPGMQYSVPFDTTIFVNA 348

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LVLIV+   +   +  LV   ++ + +I     + LL  ++ L ++
Sbjct: 349 SVTEVYKTLFEAGILVLIVILFFLQNFRATLVPTTTVPVTIIGAFFAMLLLSYSINLLTL 408

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IG+ VD  I++ E + +   +  S   S  +  +     I    +  +   V  
Sbjct: 409 FALVLAIGIVVDDAIVIVEGVTQYIERGTSPKESAIIAMNELLGPIIGITLVLMAVFVPA 468

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G     FA+ +  +  IS   A+++        ++              F  I
Sbjct: 469 GFMPGLTGAMYAQFALVIAATAFISAINAMTLKPTQCALWLKPVDSHKEKNFVFRWFDKI 528

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +   ++      V  + +     + L+    L       G I +       +++ + 
Sbjct: 529 YYPVENTYISFIDRLVHKNKMVCSIGLLLVLLAILGLSRIPTGFIPIEDQGYVMMNVQLP 588

Query: 595 RSN----LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                   E+L     +          ++ +        +           + +   +  
Sbjct: 589 DGASLGRTEALLHKLSAQVAKVDGIQDVITIDGISLLDNSANLANAGALYIMFKDWSVRG 648

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAI 678
            +   +       E+ +K +   ++  +
Sbjct: 649 SKEGLLPLYTKLNEIAQKTLEAKVLVMV 676



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 66/185 (35%), Gaps = 9/185 (4%)

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLG 709
            + E        ++       + I    +L+Y+ +      W      + ++ L +  T+ 
Sbjct: 866  SYEWTSTAYQEKIAGNMSYYIFI-LSLILVYMILAGQYENWVTPAAILLSVPLALIGTVL 924

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              +  G+  N+     VL LI  +  + +++ +  R+  + +    S  +          
Sbjct: 925  ALSALGLANNMYTQIGVLLLIALAAKNAILIVEVAREQRQFHNK--SIMESAVLGAKTRF 982

Query: 770  GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS A  + V+P+      G +   S  I +  G++ +   ++       + +  W
Sbjct: 983  RPILMTSFAFILGVMPLVFATGAGANARRSIGIAVCSGMLASTCLAVVFVPAFYVMLQSW 1042

Query: 827  RAKNA 831
            + +  
Sbjct: 1043 QERRQ 1047



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 76/223 (34%), Gaps = 7/223 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            + + V +  V              +  +     +   Q    +++   + +     ++ 
Sbjct: 268 SSAKIVRIRDVGRVELGSSSYSQLAKLNNKPTAAIGIYQLPGANALQVAKEVRATVAEMA 327

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P     +            + +    +  + I +LI I    + +   L   TT+ +
Sbjct: 328 KKFPPGMQYSVPFDTTIFVNASVTEVYKTLFEAGILVLIVILFFLQNFRATLVPTTTVPV 387

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I        L     NL  + A++  IG  V+D +V+ + +    +      S ++   
Sbjct: 388 TIIGAFFAMLLLSYSINLLTLFALVLAIGIVVDDAIVIVEGV---TQYIERGTSPKESAI 444

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
            ++NE LG  +  ++      +P        G++   FA+ +A
Sbjct: 445 IAMNELLGPIIGITLVLMAVFVPAGFMPGLTGAMYAQFALVIA 487


>gi|156976588|ref|YP_001447494.1| preprotein translocase subunit SecF [Vibrio harveyi ATCC BAA-1116]
 gi|156528182|gb|ABU73267.1| hypothetical protein VIBHAR_05362 [Vibrio harveyi ATCC BAA-1116]
          Length = 300

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 145/284 (51%), Gaps = 6/284 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              + R++   +S++ +I ++  L   GLN G+DF GG+   V  ++ +    + + L+ 
Sbjct: 8   NIRKIRYFTTAVSVVLTIIALVALGMKGLNLGLDFTGGMVTEVKVDKQLTNYDLLNALQP 67

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 S      +  +++R         A+ + L  V   +  I     + +  IVG +
Sbjct: 68  KLGESTSVTRSGEDGRWVIRYSAP-----AEGQTLPSVADVLKPISHQVDVVSNSIVGAQ 122

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           + ++L  +G + ++IS + +L Y+  RF+W  A G++  L  D+   LGFFA+  +EFNL
Sbjct: 123 VGQDLFDQGGLALLISVLTILGYLCFRFEWRLASGSLFALAHDVILVLGFFAITQMEFNL 182

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T  AA+L ++GYS+ND +++ DR+R+ + +   +     + D+++  T  R++ TS    
Sbjct: 183 TVFAAILAILGYSLNDSIIIADRIRE-LLVAKQNWKTEQINDEAVLATFSRTMVTSGTTL 241

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           I+V  + + GGS +  F+  M  G++    SSI I   +  ++ 
Sbjct: 242 ITVGALWIMGGSALAGFSTAMFIGVLSGTWSSISIGTVLPEWLK 285


>gi|197104653|ref|YP_002130030.1| AcrB/AcrD/AcrF family protein [Phenylobacterium zucineum HLK1]
 gi|196478073|gb|ACG77601.1| AcrB/AcrD/AcrF family protein [Phenylobacterium zucineum HLK1]
          Length = 1079

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/518 (12%), Positives = 137/518 (26%), Gaps = 31/518 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   ++C +G             +   PS  P                V    
Sbjct: 9   RRPVFAAVAAIILCVVGFAS-----FQALTVRELPSVDPPVV---------SVSTVYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + L+       + R   ++I +SF   R  +  A+ V   +  
Sbjct: 55  SAEVIEERITEVIERQVAGLEGIDRINSASRDGSSRINISFTLDRDLDAAANDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L        +         I+    +   +    ++ +    R  ++++       
Sbjct: 115 VMAALPEQADPPQIQKANADASPIMFLSFSSATLNR--LQLTDYAQRYLVERLSTVPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP  +     T   +       N               +     
Sbjct: 173 NVGVGGAQNYAMRIWLDPDAMAAAGVTVEDVESSLNAQNLELPAGSLEAPAKDFTIRVAR 232

Query: 242 LVEDKVEI---------------SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                 +                +   L GA A             +  +          
Sbjct: 233 GYATPEQFARLPITRARTTAASQTSAALGGAAAGAGAAQGAVRDVTTATQGETYITRLGD 292

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
              + +               +       ++  +     E        +R G        
Sbjct: 293 IARVEEGPDEHRRSFRSNGSEMVGIAIFRQSLANDLEISEGVRNAIEQIRPGLPEGSKLE 352

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           V          +      T AI  G V +V F+ +   +  L+      + ++ T  +L+
Sbjct: 353 VSVDYTEFTRHAIDEVWWTMAIALGCVALVNFLFLGTWRAALIPSIVAPICILSTFIVLA 412

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
            LG ++ L ++  +VL IGL VD  I+V E I+      +    +   G  + +  +  +
Sbjct: 413 PLGFSINLLTLLALVLAIGLVVDDAIVVVENIQRRIDDGEPPVVAAQRGARQVFFAVVAT 472

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            I  +     L F  G   R F            F+A+
Sbjct: 473 TIVLVSVFAPLMFLPGFIGRLFVELAVAVAGAVAFSAL 510



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 66/206 (32%), Gaps = 4/206 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    E       SF++   E   +   +    + +  +  +    ++I   +P  +  
Sbjct: 292 DIARVEEGPDEHRRSFRSNGSEMVGIAIFRQSLANDLEISEGVRNAIEQIRPGLPEGSKL 351

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKTLGFF 711
              +   + +R  I +    + I+   + +        W  AL       + I  T    
Sbjct: 352 EVSVDYTEFTRHAIDEVWWTMAIALGCVALVNFLFLGTWRAALIPSIVAPICILSTFIVL 411

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A  G   NL  + A++  IG  V+D +VV + +    +             +   +    
Sbjct: 412 APLGFSINLLTLLALVLAIGLVVDDAIVVVENI---QRRIDDGEPPVVAAQRGARQVFFA 468

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSF 797
            V T++       P+    G +   F
Sbjct: 469 VVATTIVLVSVFAPLMFLPGFIGRLF 494



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/111 (17%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ L+G +  + +++ +      +L    +S R+ + +S +  L   + TS++A    
Sbjct: 950  IGLIILVGIAAKNGILIVEFAN---QLRDEGLSIREAVIESASLRLRPIIMTSISAAAGA 1006

Query: 784  LPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ VWGG       +  + + FG + A   ++F+       +  +     
Sbjct: 1007 IPLIVWGGAGGEARKTIGVTIFFGAIFATMVTLFVVPVFYNMLARFTKSPN 1057


>gi|197118749|ref|YP_002139176.1| RND family efflux pump inner membrane protein [Geobacter
           bemidjiensis Bem]
 gi|197088109|gb|ACH39380.1| efflux pump, RND family, inner membrane protein [Geobacter
           bemidjiensis Bem]
          Length = 1052

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 173/689 (25%), Gaps = 47/689 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +GLL           + ++P   P          +   + +     
Sbjct: 8   RPIFAWVIAIVVMLVGLLAI-----KALPVSQYPPIAPP---------QISINAMYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +        I L+F           +V   LQ 
Sbjct: 54  AQTVQDTVTQVIEQKMNGIDNLLYMASTSDSAGAVSINLTFRAGTDPNVAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +         +++     +    +  + +  ++    D +   +   
Sbjct: 114 ATPLLPQVVQRQGVQVVKSTRNFLLIVGLVSEDESLNRHQLTDYMVSNIQDIVSRVQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D  ++     T   +       N       FG +          
Sbjct: 174 EVTVFGSQ-NAMRVWMDAEKMNNYKLTPNDVVNALQAQNAQVSAGQFGGQPAVHGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                             
Sbjct: 233 TITARTLL-------------QSPEEFDQIVLRTNPDGSTVKLRDIAKTDVGTENYDILA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +        A  +   T +      A L          +           S   
Sbjct: 280 RYKGKPVAAMALRLAAGANALDTADRVKAKMAELEKFVPAGAKVVYPYDTTPFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV I++F+ +   +  L+   ++ + ++ TL +L   G ++   ++  +V
Sbjct: 340 VLKTLMEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGTLGVLFAAGFSINTLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + IGL VD  I+V E +      +  S   +      +  S ++          + + FF
Sbjct: 400 IVIGLLVDDAIVVVENVERIMTDEGLSPHDATVKSMGQITSALWGIATVLCAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSI 523
            G      R F++T+  ++++S+ TA  +  A+   +                 +     
Sbjct: 460 SGSTGVIYRQFSVTIVSAMILSVLTAQILTPALCATLLKPVQKGHTPGEGSWFSRFFSWF 519

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    +        +   F +   +      L  I +   L         + +G I   V
Sbjct: 520 NKVFEAARHRYESIVGNSFGKPLRYLFIYGCLVGIMAFFFLRLPTAFLPDEDQGFIVCQV 579

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         LE ++   +  +N   +    V      G           +K    
Sbjct: 580 QLPAGATQERTLKVLEQVEHYFLEKENKTVDSLITVAGFSFAGRGQNMGLAFVKLKDWKL 639

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              P                ++       
Sbjct: 640 RPTPDLKAPALAGRAMGAFSKIKDGMAFA 668



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 84/241 (34%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +       +  DI  +        +        +++     ++    ++ + VP 
Sbjct: 260 VKLRDIAKTDVGTENYDILARYKGKPVAAMALRLAAGANALDTADRVKAKMAELEKFVPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  ++ +   + I +++  +     L     + + +  T
Sbjct: 320 GAKVVYPYDTTPFVKISIEEVLKTLMEAVFLVFIIMFLFLQNIRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG     G   N   + A++ +IG  V+D +VV + +     +    +S  D   KS+ +
Sbjct: 380 LGVLFAAGFSINTLTMFALVIVIGLLVDDAIVVVENV--ERIMTDEGLSPHDATVKSMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                   +       +PMA + GS       F++ +   ++++  ++  +   +   + 
Sbjct: 438 ITSALWGIATVLCAVFIPMAFFSGSTGVIYRQFSVTIVSAMILSVLTAQILTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/268 (10%), Positives = 74/268 (27%), Gaps = 11/268 (4%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   +      +       V  S   +         +   N       +        
Sbjct: 779  PKYRMVPEDINRWYVKNNTGEMVPFSAFATAHWDYASPRLERYNGIPSMEIMGSAARGIS 838

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   +  +       I    T  + E          +    + +++  +A+     +
Sbjct: 839  TGEAMAEMETIAATLPPGISYEWTGLSYEEKAAGAQAPALYA--ISLLVVFLAVA---AL 893

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               W      +  L L +   +    L  +  ++     +LT +G S  + +++   ++ 
Sbjct: 894  YESWTIPFVNLLMLPLGLVGAITAVTLRVLPNDIYLQIGLLTTVGLSTKNAILIIQFIKD 953

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
             M          +    ++   L   + TS+A F   LP+A+    G     +    +  
Sbjct: 954  QMHQ---GHELVEATLTAVKIRLRPVIMTSLAFFFGTLPLALTKGAGAGAQNAIGTAVTG 1010

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++ A    +       + +  +  K  
Sbjct: 1011 GLLSATFIDLIFIPFFFVMVTKFFMKKK 1038


>gi|307321187|ref|ZP_07600590.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti AK83]
 gi|306893178|gb|EFN23961.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti AK83]
          Length = 1044

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/623 (11%), Positives = 165/623 (26%), Gaps = 44/623 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++   G L        Q  + +FP   P               + +    
Sbjct: 10  RPRLATVIAVVMAIAGALALF-----QIPIAQFPQITPPE-------------VQVTASY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+      +   +   E +   S     N    +T++FA           V  
Sbjct: 52  PGANASVLEESVGAPIEDQVNGVEDMLYMSSSSTNNGTYSLTVTFAVGTDPALAQVNVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L     +  +         ++       +     I  S        D I   
Sbjct: 112 RVALATPRLPASVTQTGVSVRARSSSMLMGVAIYSPEGTRDEIFISNYAANNIRDAIARV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P R++ L  T   ++      N        G        
Sbjct: 172 AGVGEAGIFG-PSYSMRIWMNPDRMQALGLTATDLTSAIQAQNAQASAGQLGSPPATSGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                     I                 +       
Sbjct: 231 QLQLTIMAQGRLATEE-------------DFSNIIVRTNTEGALVRLRDVARVELGAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +    A+ +              L           +          
Sbjct: 278 DTASTFNGQPSATVVVYQSAEANALAVSRAVLSELDRLSRQFPEDVAYAIVFDTTAFITE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T AI   LV+ V +  +   +  ++   +I +++I   A+L LL  +    ++
Sbjct: 338 TIKEIAITLAITFALVVAVTYFFLQDWRATVIPTLTIPVSLIGGFAVLYLLDYSANTITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L I L VD  I+V E ++     +  +V  +     S+    I  + +      V 
Sbjct: 398 FAVILAISLVVDDAIIVVENVKRLMAEERLNVHDATRRTMSQVTGPIVATTLVLAALFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSR 530
           + F     G   R F++T+ ++I  S   A+++  A+ + ++R  + +            
Sbjct: 458 IAFVAGITGQLYRQFSVTILITITFSTINALTLSPALCVLMLRSPREQRSGIFGTFNRGL 517

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            F     +A+    +R   +   IL +I          L  G           +  +  +
Sbjct: 518 DFSRNWYVAMLDRMSRRLWIASVILLAILGGVYGLFRALPTGFVPSEDQGYLFINVQLPN 577

Query: 591 LSVVRSNLESLQIGDISFQNFDG 613
            + +    ++L       Q   G
Sbjct: 578 AASLERTQQALDTVSRILQRTPG 600



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 65/167 (38%), Gaps = 9/167 (5%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              +I+    +  Y+++      W   L  + ++ + +   L    L  I+ N+ A   ++
Sbjct: 869  TALILLMGLIFTYLFLVGQYESWSVPLAVMLSVAVAVLGALVGLMLASIDINIYAQIGLV 928

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG +  + +++ +  ++        ++  +       +     + T+MA+ + V+P+ 
Sbjct: 929  LLIGLAAKNAILIVEFAKE---RRDKGMATPEAAAAGTAQRFRPVLMTAMASILGVIPLV 985

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    G     +  + +  G++V     + +     + +   R +  
Sbjct: 986  IATGAGAGSRRAIGMTVFGGLLVGTVVGLLLIPVFYVLVQTVREQAK 1032



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/280 (10%), Positives = 83/280 (29%), Gaps = 9/280 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S   +      L           +    + V  N    L  +R                 
Sbjct: 223 SPPATSGQQLQLTIMAQGRLATEEDFSNIIVRTNTEGALVRLRDVARVELGAQSYDTAST 282

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-V 671
                   +            V   V  ++  +           +    +  +      +
Sbjct: 283 FNGQPSATVVVYQSAEANALAVSRAVLSELDRLSRQFPEDVAYAIVFDTTAFITETIKEI 342

Query: 672 GVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            + ++    L+     F    W   +    T+ + +        L     N   + AV+ 
Sbjct: 343 AITLAITFALVVAVTYFFLQDWRATVIPTLTIPVSLIGGFAVLYLLDYSANTITLFAVIL 402

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            I   V+D ++V + +++ M      ++  D   +++++  G  V T++      +P+A 
Sbjct: 403 AISLVVDDAIIVVENVKRLMAEE--RLNVHDATRRTMSQVTGPIVATTLVLAALFVPIAF 460

Query: 789 ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G +   F++ +   I  +  +++ ++  + + +  
Sbjct: 461 VAGITGQLYRQFSVTILITITFSTINALTLSPALCVLMLR 500



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 68/549 (12%), Positives = 153/549 (27%), Gaps = 60/549 (10%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M    W+  +  +    G+           +       +               ++ L  
Sbjct: 531  MSRRLWIASVILLAILGGVYGLFRALPTGFVPSEDQGYLF-------------INVQL-- 575

Query: 61   DEDDFVNGFLQMYSDELRSFL-------KKEGIGVFSMRQIQNK-----ITLSFADSR-- 106
              +       Q   D +   L          GI   SM           IT         
Sbjct: 576  -PNAASLERTQQALDTVSRILQRTPGVANSVGIAGNSMVGGGGSNAGMVITALKPWGERR 634

Query: 107  FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
              E   D +   L+    ++                 +       +      + ++  E+
Sbjct: 635  SAEESIDAIMNRLRAEFGRIPTASVVPFNPPAIPGLGTTGGFDLRLQARSGQSQQEIAEV 694

Query: 167  IRQRIDQIGISESTIQRLGSHRILIQLPGE-QDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
            +R  I +   +        +    +       D  R      +TA +         S   
Sbjct: 695  MRGLIVKANQTPGLASVFSTFSADVPQVFLNVDRRRAELFGVSTATIFNAMQSHLGSSYV 754

Query: 226  FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
              F +         Q   + +  I  I      +          +       G       
Sbjct: 755  DDFNIFSRVYQVRIQDEPQFRSRIEDIQRLRVRSRNGELVPLQSLLSISTSYG------- 807

Query: 286  TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
                       +    +  +  IN    +G +      T+ +          G     L 
Sbjct: 808  --------PTAINRYNLFPSASINGQAATGTSTGQALATMASLAEQNLPEGFGFEWTGLA 859

Query: 346  IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            + EE+         +  +    ++ GL+   LF++  Y  W +     + + V +  AL+
Sbjct: 860  LQEEQ---------AGNQTALILLMGLIFTYLFLVGQYESWSVPLAVMLSVAVAVLGALV 910

Query: 406  SLLGATLTLPSIA--GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
             L+ A++ +   A  G+VL IGLA  + IL+ E  +E   K  +   +   G ++ +  +
Sbjct: 911  GLMLASIDINIYAQIGLVLLIGLAAKNAILIVEFAKERRDKGMATPEAAAAGTAQRFRPV 970

Query: 464  FDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              + + +++  + L      G G+ R   +T+   +L+     + ++    + +   ++ 
Sbjct: 971  LMTAMASILGVIPLVIATGAGAGSRRAIGMTVFGGLLVGTVVGLLLIPVFYVLVQTVREQ 1030

Query: 521  KSIDINPLS 529
                     
Sbjct: 1031 AKERFFRTR 1039


>gi|302880079|ref|YP_003848643.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Gallionella capsiferriformans ES-2]
 gi|302582868|gb|ADL56879.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Gallionella capsiferriformans ES-2]
          Length = 1044

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 78/687 (11%), Positives = 185/687 (26%), Gaps = 44/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L      L    + ++PS  P               L + V+ 
Sbjct: 9   RPIFAWVIALIILLGGALA-----LKNLPISQYPSVAPPA-------------LTITVNY 50

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG---IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  ++      L   +           +       ITL+F      +  + +    
Sbjct: 51  PGASAQVIEETAVALLEQEMNGIEHLLYMESASELGTGSITLTFEAGSNLDLASVEAQNR 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++   ++L  D ++  +V T      ++             +          ID +    
Sbjct: 111 IKRAEARLPEDVRRLGIVVTKTARNFVMFVALFSPDKSLDNVALGSYATSSVIDSLRRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              + L        +     P RL+    + A +S      N+       G         
Sbjct: 171 GVGEVLMFGT-EYSMRLWLKPERLQHFNLSPADVSAAVRAQNSQLATGELGQLPSAPDQE 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              ++  +  +S                +    I                 +        
Sbjct: 230 LNAVIVTRSRLS-------------TPEEFGNIIVRTNPDGSTLRVKDVARVELGAQDYS 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +                +   T++   +    L          +V          S
Sbjct: 277 RTARIDGNPTAAIAIRLSPGANALDTVKAVNVKMTELAKFFPKSIDWVVPYDTSKFIDVS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 + A    LV++V+++ +   +  L+    I + ++  L  L LLG ++ + ++ 
Sbjct: 337 IGEVLKSLAEALVLVVLVMYLFLENWRATLIPTIVIPIALVGALVGLYLLGYSINVLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IG+ VD  I+V E +      +  S   +      +    I    +  +   + +
Sbjct: 397 AMVLAIGIVVDDAIVVVENVERIMTTEGLSPRAATRKAMDQIVGAIIAITLVLMAVFIPM 456

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSR 530
            FF G      R F++T+ L+++ S   A+++  A+   +       + M S        
Sbjct: 457 AFFPGSTGAIYRQFSVTLVLTMMFSALMALTLTPALCATLLKHEPGREMMPSRGFFGWFN 516

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            F            ++        L     + +                +        V 
Sbjct: 517 RFFARTTQGYTANVSKNIRKTSRYLLVYAVVLIAMGWLFTKLPGSFLPEEDQGYFINMVQ 576

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L    +   +L +     Q +  +      +         + +   +V  ++        
Sbjct: 577 LPSGATQARTLDVLSQVEQFYVKQPEVEHVIGVAGFSFFGRGQNAALVFVRLKSWDERPD 636

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISA 677
             +      K +  L  +    +I + 
Sbjct: 637 AASAAPAMVKKANMLFFRIKQAMIFAI 663



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 85/269 (31%), Gaps = 11/269 (4%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                   +     + +      +        ++L V  N+   + +          G   
Sbjct: 752  VAYINDFVRQGRILRVQMQADADMRRTPADIMKLTVRNNKGAMVPLSELATPRWIAGSPK 811

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
               ++G+    +     PG S  +         K            T     +       
Sbjct: 812  LDRYNGQPAMKISGGPAPGRSSGEAVAAMEEVAKKLPPGFGFEWSGTSFEERQSGA---- 867

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   IS I + + +   ++ W      +  + L +   +    L G+  ++     +
Sbjct: 868  QAPLLFGISLIVVFLCLAALYESWSIPFAVLLVVPLGVFGAVLAVTLRGLPNDVYFKVGL 927

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + +IG S  + +++ +  R   KL    +S  D   ++        + TS+A  + VLP+
Sbjct: 928  IAIIGLSSKNAILIIEFAR---KLQDDGMSLIDATLEACRLRFRPILMTSIAFIVGVLPL 984

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSS 812
            A+    G     +    +  G++ A   +
Sbjct: 985  AISTGAGAQSRHAIGTGVMGGMIAATLLA 1013



 Score = 45.1 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   L     + + +   L    L G   N+  + A++  IG  V+D +VV + +
Sbjct: 357 LFLENWRATLIPTIVIPIALVGALVGLYLLGYSINVLTLFAMVLAIGIVVDDAIVVVENV 416

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFAI 799
                + T  +S R    K++++ +G  +  ++   +    +PMA + GS       F++
Sbjct: 417 --ERIMTTEGLSPRAATRKAMDQIVGAII--AITLVLMAVFIPMAFFPGSTGAIYRQFSV 472

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +   ++ +A  ++ +   +   +    
Sbjct: 473 TLVLTMMFSALMALTLTPALCATLLKHE 500


>gi|170748695|ref|YP_001754955.1| protein-export membrane protein SecF [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655217|gb|ACB24272.1| protein-export membrane protein SecF [Methylobacterium
           radiotolerans JCM 2831]
          Length = 313

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 108/298 (36%), Positives = 177/298 (59%), Gaps = 6/298 (2%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L PD     FMR R +   +S + S+ ++ L  T GLN+GIDFKGG  + + A  
Sbjct: 1   MRLLRLWPDESHFDFMRFRRFTFPLSAVLSLATVALFLTIGLNFGIDFKGGTLVELQAKS 60

Query: 588 -PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D++ +R        G+   Q    +   LVRL  QPG+         ++ K      
Sbjct: 61  GTADVASIRHTAAGFGFGEPEVQELGNQGTVLVRLPLQPGEQGQTA----VMNKAHAAFD 116

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                + TE VGP++S EL++ G +GV++S +A+L+Y+W RF+   ALGAI   + DI  
Sbjct: 117 KDYDFRRTETVGPRVSGELVQSGTLGVVLSVVAVLLYLWFRFERELALGAIVGTLHDIVL 176

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T+G F +  IEFN+T++AA+LT++GYS+N+ VVV+DR R+ M+ Y  +I   DL++ SIN
Sbjct: 177 TVGVFIISRIEFNMTSIAAILTIVGYSLNETVVVFDRTRELMRRY-KTIPTVDLLNLSIN 235

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            T+ R+V TS+++ +S+L + ++GG  I  FA+ M  G+++   S+IF++ P+L+++ 
Sbjct: 236 STMSRTVMTSISSALSLLALVLFGGEAIKGFAVVMLCGVLICTYSAIFVSTPVLIYLG 293


>gi|121998517|ref|YP_001003304.1| acriflavin resistance protein [Halorhodospira halophila SL1]
 gi|121589922|gb|ABM62502.1| acriflavin resistance protein [Halorhodospira halophila SL1]
          Length = 1038

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/520 (11%), Positives = 152/520 (29%), Gaps = 39/520 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   +I  +G+         Q  +  +P   P                     
Sbjct: 9   RRPVLATVASVLIVVLGIASLA-----QLPVREYPDIDPPLV---------SIETRYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  +    +   S +          R  + +  + F   R  +  A+ V   +  
Sbjct: 55  APAVIDTEITERIESAVSSVDGIRSMTSESRDGRGETNIEFELGRDIDAAANDVRDAIGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L VD    ++  T      ++    +  ++     E +    RQ +D++ + +   
Sbjct: 115 ILDDLPVDADPPVVAKTEADARPMMWLSLSSSRMTPE--EMTDYADRQLVDRLSVLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D   L     T   +       N             + +     
Sbjct: 173 RVRIGGERRYAMRVWLDSDALAARDLTVEDVENALRRENIELPAGEIESTARQLTVRTDT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D+                         +  +  G           + + +       
Sbjct: 233 RLRDR--------------------DAFARLVIERRGDELVRLEEVARVERGVEDDDTAV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +++ +     +      A +          +V          S   
Sbjct: 273 RLNGETAVGLGVIRQSRANTIAVADAVLEEMARIEEQLPGDLRLVVGYDESQFVRQSIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++ +F+ +   +  L+   +I + VI    +++ LG +L + ++  ++
Sbjct: 333 VVRTLLIAVALVVLTIFIFLRSLRATLIPSVTIPVAVIGAFTVMAPLGFSLNVLTLLALI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I+    + +    +   G  +    +  + I+ +   V + F  
Sbjct: 393 LAIGLVVDDAIVVLENIQRRIDEGEPPLLAAYRGVRQVGFAVIATTISLVAVFVPIAFME 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           G        F + +  +++ S F A+++   +    +R +
Sbjct: 453 GNVGRLFTEFGLVLAAAVVFSSFVALTLTGMLCSKWLRPR 492



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 96/255 (37%), Gaps = 7/255 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    +  V L  V      ++  D + +        L  ++    +++A    +    
Sbjct: 244 VIERRGDELVRLEEVARVERGVEDDDTAVRLNGETAVGLGVIRQSRANTIAVADAVLEEM 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            +I E +P            +  R+ IR+ +  ++I+   +++ I+I  +     L    
Sbjct: 304 ARIEEQLPGDLRLVVGYDESQFVRQSIREVVRTLLIAVALVVLTIFIFLRSLRATLIPSV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ + +       A  G   N+  + A++  IG  V+D +VV + +    +         
Sbjct: 364 TIPVAVIGAFTVMAPLGFSLNVLTLLALILAIGLVVDDAIVVLENI---QRRIDEGEPPL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFI 815
               + + +     + T+++     +P+A   G+V      F + +A  +V ++  ++ +
Sbjct: 421 LAAYRGVRQVGFAVIATTISLVAVFVPIAFMEGNVGRLFTEFGLVLAAAVVFSSFVALTL 480

Query: 816 AAPILLFIYDWRAKN 830
              +       RA++
Sbjct: 481 TGMLCSKWLRPRAEH 495



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 64/161 (39%), Gaps = 7/161 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             +   ++ + + + +  +F+ +   L  +T + L IT  LG   L G   NL +   ++ 
Sbjct: 856  FLTFGLALLIVFLVLSAQFESFIHPLIIMTAVPLAITGALGALLLSGGSLNLYSQIGMIL 915

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +L     + R+ I           + T+++     +P+ +
Sbjct: 916  LIGLMTKNGILIVEFAN---QLRDQGYTVREAIHAGAALRFRPVLMTAVSTVFGAVPLVL 972

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                G     +    +  G+  A   ++F+   +  ++  +
Sbjct: 973  ALGAGAESRAAIGTVIIGGMGFATLLTLFVIPVLYDWLARY 1013


>gi|167581941|ref|ZP_02374815.1| multidrug efflux protein [Burkholderia thailandensis TXDOH]
          Length = 1043

 Score =  176 bits (444), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/622 (11%), Positives = 171/622 (27%), Gaps = 41/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+            + ++P   P   +SL        +       
Sbjct: 8   RPVFAWVISLFIMLGGIFAI-----RALPVAQYPDIAPP-VVSL--------YATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +        +    Q  ++L+F      +  A  V   L+ V
Sbjct: 54  AQVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      + + ++     +      +E         +  +   E   +
Sbjct: 114 EARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASANVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     ++                                +      I            
Sbjct: 233 VLADAPLT-------------TPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSF 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L     P     +          S S  
Sbjct: 280 VNGKTATGMGIKLAPGSNAVATEKRVRATMDELAKFFPPGVKYQIPYETASFVRVSMSKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+F+ +   +  L+    + + ++ T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLVEAGVLVFAVMFLFMQNFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529
              G   R FA  + +SI  S F A+S+  A+   +++                +     
Sbjct: 460 GAVGNIYRQFAFALAVSIGFSAFLALSLTPALCATLLKPVAGDHHEKDGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R   W V    L +  ++ +          + +G   + V+  +  
Sbjct: 520 STHRYTQRVGRVLKRPLRWLVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNF 611
            L+    ++  ++    +    
Sbjct: 580 PLAETMQSVRRVEEYVRTHSPS 601



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 71/203 (34%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    ++ + K     V       T         +++   +   ++    M +++ 
Sbjct: 300 ATEKRVRATMDELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +   +   K++ +  G  V  ++      +PMA +GG+V      FA  +A
Sbjct: 416 -ERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 65/177 (36%), Gaps = 9/177 (5%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFF 711
                 +   E +      ++ +   +++++ +      W      +  + L +   +   
Sbjct: 851  YAWSGQSYEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAVMLVVPLGVIGAVAGV 910

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             L G+  ++     ++  IG S  + +++ +  +    L    +S  D   ++    L  
Sbjct: 911  TLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKD---LVAQGMSLADAALEAARLRLRP 967

Query: 772  SVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
             V TS+A  + VLP+    G +     AI      G++ A   +IF+     + +  
Sbjct: 968  IVMTSLAFGVGVLPLAFATGAASGAQIAIGTGVLGGVISATLFAIFLVPLFFVCVGR 1024


>gi|121609214|ref|YP_997021.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Verminephrobacter eiseniae EF01-2]
 gi|121553854|gb|ABM58003.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Verminephrobacter eiseniae EF01-2]
          Length = 1054

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 66/517 (12%), Positives = 145/517 (28%), Gaps = 30/517 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G +      L Q  + ++P   P   +            +     
Sbjct: 8   RPIFAWVIALFIMVLGGVA-----LTQLPISQYPPVAPPTIV---------VSAIYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   +            +   +  ITLSF      +     V   L  
Sbjct: 54  APTLEDSVLSVIEREMNGAPGLIYMESVAQADGSGSITLSFETGTNPDLAQVDVQNRLSR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L     +  +     +   ++ +        +  +       R  + ++       
Sbjct: 114 ATPRLPAAVAQQGVRVDKARSNFLLFTMLASTNPATDQVALGDYASRNVLPELQRLPGIG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP+++     + A+++      N        G         +Q 
Sbjct: 174 QAQLFGT-ERAMRIWIDPAKMAGFSLSAAEITAAIRAQNAQVTSGAIGDLPHIAGQADQ- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V   V ++G   +           +    +                 +           
Sbjct: 232 QVTATVVVNGQLTSTE---------QFGNVVLRANPDGSTVRIKDVARVELGGQAYATAA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +              L        +  +   +      S   
Sbjct: 283 RLNGQPAVGVGLQLAPGGNALQAARAVRARMDELARHFPQGMVWSIPYDSSRFVSLSIRQ 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   ++ ++    + + ++ T A L  LG ++ + ++ G+V
Sbjct: 343 VAETLLEAVALVFLVMFLFLQNWRYTIIPTIVVPVALLGTFATLLALGFSINVLTMFGMV 402

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +      +    I    +  +   V L FF
Sbjct: 403 LVIGIVVDDAIVVVENVERIMRTEGLSPLDATRKAMRQISGAIIGVTVVLISVFVPLAFF 462

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               G   R FA  M  SI +S F A+S+  A+   +
Sbjct: 463 AGSTGNIYRQFATVMVASISLSAFMALSLTPALCATL 499



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 76/200 (38%), Gaps = 6/200 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
              R +     ++    P   + +      +     IR+    ++ +   + + +++  +
Sbjct: 304 QAARAVRARMDELARHFPQGMVWSIPYDSSRFVSLSIRQVAETLLEAVALVFLVMFLFLQ 363

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W + +     + + +  T       G   N+  +  ++ +IG  V+D +VV + +    
Sbjct: 364 NWRYTIIPTIVVPVALLGTFATLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENV--ER 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            + T  +S  D   K++ +  G  +  ++      +P+A + GS       FA  M   I
Sbjct: 422 IMRTEGLSPLDATRKAMRQISGAIIGVTVVLISVFVPLAFFAGSTGNIYRQFATVMVASI 481

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A  ++ +   +   +  
Sbjct: 482 SLSAFMALSLTPALCATLLR 501



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 92/282 (32%), Gaps = 11/282 (3%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L + A+      V  S   S +    + Q      
Sbjct: 761  FPNQGRLQRVVVQADAPARMQPEDLLQINAHNRQGQPVPLSAFASTRWVTGAQQTVRYNG 820

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVI 674
               +R+        +    +  +++   ++         E  G     +L   + ++   
Sbjct: 821  YAAMRISGSAAPGYSTGAAMAEMERLAAQL---PAGFGFEWTGQSREEKLAGAQALILYS 877

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             S +A+ + +   ++ W   L  I  + L +   L    L G   ++     ++T+IG S
Sbjct: 878  FSILAVFLCLAALYESWSIPLAVILVVPLGVLGVLLATLLRGYANDIYFQVGLITIIGLS 937

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ +  +    L        +    +        V TSMA  + V+P+ +    G
Sbjct: 938  AKNAILIIEFAKD---LQAQGQGLIESARAAARLRFRPIVMTSMAFGLGVMPLVIASGAG 994

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +   +    +  G++   + ++F      + +      +AR
Sbjct: 995  SASQRAIGTGVLGGMITGTALALFFVPWFFVMVRGLFKGSAR 1036


>gi|330829036|ref|YP_004391988.1| hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter
           [Aeromonas veronii B565]
 gi|328804172|gb|AEB49371.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Aeromonas veronii B565]
          Length = 1034

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 77/685 (11%), Positives = 174/685 (25%), Gaps = 46/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL       +    ++++P   P               + +    
Sbjct: 9   RPIFASVISIIIVLGGLAA-----MRALPIEQYPQITPPV-------------VSVTAFY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +           Q  + + F      +     V  
Sbjct: 51  PGATPEVISQTVAAPLEQQINGVERMIYMQSGSASNGQMNLNVYFEIGTDPDQATINVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  + KK  +    +    + +               S   +   ID++   
Sbjct: 111 RVSAAMAQLPEEVKKQGVTVKKKSTSILQVVTLQSPNGSFDTTYLSNYALLNIIDELKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P RL QL  T + +       N        G +      
Sbjct: 171 PGIGDTTLFGGTDYAMRIWLRPDRLAQLELTPSDVIGAIREQNTQFAAGKIGAQPTTAPI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V+ K  +                 +    I        +        +       
Sbjct: 231 DFTYTVQTKGRL-------------EDVKEFQNIIVRSMPDGSKIRVRDVARVELGGKDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +        L+          +          
Sbjct: 278 DLVARANGKPAIGIATYLQPGANAVAVADAVHATMERLKERFPQDIEYQIPYDTTEFVKI 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ +++I T A + +LG ++ L ++
Sbjct: 338 SIEEVVHTLFEAIVLVFVVVYLFLQNFRATLIPCIAVPVSLIGTFAGMLVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      K  S   +  +        +    +      + 
Sbjct: 398 FGMVLAIGIVVDDAIVVLENVERIMSEKKCSAKEAAILAMQEVSGPVVAIVLVLCAVFLP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      + FAIT+ +S+ IS   A+++  A+   +++    K            
Sbjct: 458 VAFMGGMTGVMYKQFAITVAVSVAISGLVALTLSPALCAVLLKEGHHKPARFFVWFNEKF 517

Query: 534 IPDCIAIQF-----MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG-VLANR 587
                          R       I  +  +    L          +   G  +  V+   
Sbjct: 518 DQLTRGYVRGVAFLNRRVGVAFAIIAVLILSIYGLFLKVPGELVPNEDQGYLISAVMLPD 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +S  ++  +      ++  +      F                    +K        
Sbjct: 578 AAAMSRTQAVADQFDKIAMANPHVKDVITFSGFDILSNAIISNSGMTFITLKDWSERQGA 637

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
                +       +S   +  G V 
Sbjct: 638 GQDSFSLAKTFQGLSLMGLADGFVA 662



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 62/168 (36%), Gaps = 7/168 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               +      + + + +  ++ +W      IT +   +   L    L G+  N+     +
Sbjct: 870  SAGMAFGFGIVMIFLILAAQYERWSLPFAVITAVPFALFGALLATWLVGLTNNVYFQIGL 929

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TL+G +  + +++ +     +  +   +S  +   ++        V TS+A  +  +P+
Sbjct: 930  VTLVGLAAKNAILIVEFA---VMKHEEGMSLIESALEAARLRFRPIVMTSLAFILGCVPL 986

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  G +   +   P+  G++ A   +IF        I     K A
Sbjct: 987  VTSSGAGAASRHALGWPVIGGMLAATFIAIFFIPLFFRLIMRRSEKRA 1034



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   NL  +  ++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPCIAVPVSLIGTFAGMLVLGFSINLLTLFGMVLAIGIVVDDAIVVLENV--ERI 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           +     S ++    ++ E  G  V   +      LP+A  G   G +   FAI +A  + 
Sbjct: 422 MSEKKCSAKEAAILAMQEVSGPVVAIVLVLCAVFLPVAFMGGMTGVMYKQFAITVAVSVA 481

Query: 807 VAASSSIFIAAPI-LLFIYDWRAKNAR 832
           ++   ++ ++  +  + + +   K AR
Sbjct: 482 ISGLVALTLSPALCAVLLKEGHHKPAR 508


>gi|71734859|ref|YP_274580.1| multidrug efflux transporter [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71555412|gb|AAZ34623.1| multidrug efflux transporter [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 1048

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/519 (13%), Positives = 148/519 (28%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTV---------KISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASINLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVTGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISGRSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     + Q S   +         S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 498



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 303 GEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 421 VMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 481 LLSVLVAMTLTPAL 494



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 89/266 (33%), Gaps = 13/266 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +    +  V  S    +  S     +   N +     +           
Sbjct: 778  RMQSADLNHWFVRNSNDEMVPFSSFARSSWSYGSPLLERYNGNSSLEVVGDPAPGVSSGT 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  ++K+    I    T Q+ ++        ++        +S + + + +   ++
Sbjct: 838  AMDAVEAIIKQLPEGIGYEWTGQSYQLRLSGSQAPMLY------AVSVLFVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L +   +    L G+  ++     +LT +G +  + +++ +  +   
Sbjct: 892  SWSVPFSVMLVVPLGVVGAVLATRLSGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK--- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S RD    +  + L   + TS+A    VLP+A+    G +   +    +  G+
Sbjct: 949  HLQEQGKSLRDATLIAARQRLRPILMTSLAFMFGVLPLALSTGAGSAGRNAIGTGVLGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A    IF+     + +    +++A
Sbjct: 1009 FSATVLGIFLVPLFFVEVRRRFSRSA 1034


>gi|313672537|ref|YP_004050648.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939293|gb|ADR18485.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 1058

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/647 (10%), Positives = 167/647 (25%), Gaps = 44/647 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   +  ++   I   G+L           + ++P   P               + +E 
Sbjct: 7   LKRPVFAWVIAISIMTFGILGIKF-----LPVSQYPEIAPPL-------------ISVEA 48

Query: 61  DEDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKV 115
                     +      +   L        I   S    Q +I L+FA     +    KV
Sbjct: 49  FYPGASAETAESTVTQIIEQKLTGLDGLWYISSKSSSSGQVRIELTFAPGTDPDIAWSKV 108

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +Q   + L    ++  +  +      +++     +       +            + 
Sbjct: 109 QNKVQLATASLPDVVQQQGVKVSKSTRNFLLIVGLVSEDGKYDGKDLRDYAKSNLESILA 168

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 +          +    D  RL +   T   +       N       FG      
Sbjct: 169 RVPGVGEVEVFGT-EYAMRVWLDRDRLIKYNLTIEDIVQALKSYNAEVSAGQFGAAPAVK 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  +               +++     +               +      +     
Sbjct: 228 GQKLNATIT-------------ISHYLQTPEEFYKIPVRINKDGSTIYIRDIGKVELGTD 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                       +       ++  +     E        +          +         
Sbjct: 275 RYDINATYNGKPVAMLAIRKQSSANSLSVAENIKKTLTEMSRYFPQNVKVVYPYDTTPFT 334

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      T      LV IV+F+ +   +  ++   ++ + V+ T  ++ LLG T+ + 
Sbjct: 335 KVAIDEVIKTLYEAVILVFIVMFVFLGSFRATIIPTIAVPVVVLGTFGIIWLLGFTVNML 394

Query: 416 SIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIA 473
           ++  +VL IGL VD  I+V E +      +  S + +            I    + + + 
Sbjct: 395 TMFAMVLAIGLLVDDAIVVVENVDRIMEEEGLSPYEATAKSMEEITGALIGIGLVLSAVF 454

Query: 474 TVVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
             + FF G      R F++T+  ++L+S+  A+ +   +   I++    K          
Sbjct: 455 LPMAFFPGSTGIIYRQFSVTVAAAMLLSVVVALVLTPVLCATILK---PKKKGEEHYKHA 511

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           F I       F      G  + +     ++       + Y +       L +        
Sbjct: 512 FFIFRPFLRLFDYILNKGRNLYVKMVGYTLAKKIRFIVLYVVIVGVTGYLFMNMKTGYLP 571

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +  +  L    I          +       +Y   +          V
Sbjct: 572 NEDQGILFVQAILPSGATMEQTDTVLNKVAKYIEENEKGSIESFAAV 618



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/180 (20%), Positives = 70/180 (38%), Gaps = 14/180 (7%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + L  + +   + V +    +T         E+I+     VI+  I M +++    
Sbjct: 305 ENIKKTLTEMSRYFPQNVKVVYPYDTTPFTKVAIDEVIKTLYEAVILVFIVMFVFLG--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
            +   +     + + +  T G   L G   N+  + A++  IG  V+D +VV    DR+ 
Sbjct: 362 SFRATIIPTIAVPVVVLGTFGIIWLLGFTVNMLTMFAMVLAIGLLVDDAIVVVENVDRIM 421

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
           +        +S  +   KS+ E  G  +   +      LPMA + GS       F++ +A
Sbjct: 422 EE-----EGLSPYEATAKSMEEITGALIGIGLVLSAVFLPMAFFPGSTGIIYRQFSVTVA 476



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 64/182 (35%), Gaps = 7/182 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                    +    +G +    +   + + +   ++ W   +  + ++ L +   +     
Sbjct: 864  WTGLSYQEKMATSQGPLVYGFAIFVIFLVLAALYESWPIPIAIMLSMPLGVIGGIIATKY 923

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++     ++T++G +  + +++    R+         +  D + ++    L   +
Sbjct: 924  RGFDNDVYFQIGLVTILGLTTKNAILIVQFARE---RIDAGYNLLDAVLEAAKLRLRPIL 980

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS A    VLP+A+    G     +    +  G + +   +  +     + IY    K 
Sbjct: 981  MTSFAFGFGVLPLAISKGAGAGAQNAIGTVVVGGTIASTFLATILIPLFYVVIYKLLGKR 1040

Query: 831  AR 832
             +
Sbjct: 1041 RK 1042


>gi|170699993|ref|ZP_02891019.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
 gi|170135093|gb|EDT03395.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
          Length = 1064

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/598 (12%), Positives = 165/598 (27%), Gaps = 37/598 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    GL+        +  +  +P  +P + +          H       
Sbjct: 10  RPIFACMLSVVALLAGLISLF-----RLPVSEYPEVVPPSIV---------VHAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +     +   +    +T++F      +     V   +
Sbjct: 56  PKVIAESVAAPLEEQINGV--EDMLYMQSQANGDGNLTLTVTFQVGTDPDKAQQLVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  D ++  + T        ++                   I    D++     
Sbjct: 114 SQALPHLPDDVQRLGVTTAKSSPTQTLVVHLVSPDNRYDMTYLRNYGILNIKDRLERVPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +          +    DP+++     T   +       N      + G   +  +   
Sbjct: 174 VGEVKIWGGGDYAMRIWLDPAKVAARGLTANDVVAAIREQNVQVAAGVVGGSPMAVNAPM 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V  +  +S               H+    +     G    +      +    +    
Sbjct: 234 QLSVNARGRLSTE-------------HEFGDIVLKAAPGGGVTYLRDVARVELAASEYGL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +          +    +          +          S 
Sbjct: 281 RSLLDGKPAVAFAILQAPNGNALEISRQVREIMTQAKRDMPKGVDYRIVFDPTQFVRASI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T A    LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G
Sbjct: 341 DAVIRTLAEAVALVVIVVVLFLQTWRASIIPLLAVPISIVGTFSLLLAFGFSINALSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +        S   +           I    +T +   V L F
Sbjct: 401 MVLAIGIVVDDAIVVVENVERNIAAGLSPREATYRAMREVSGPIVAIALTLVAVFVPLAF 460

Query: 480 F---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK--MKSIDINPLSRFFLI 534
                G   + FA+T+ +S +IS F ++++  A+   +++        +       F   
Sbjct: 461 MSGLTGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLKRHDASQDWLTRTMHRIFGPF 520

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                  F R      G           +L  +    G     G  + V      D  
Sbjct: 521 FARFNTVFHRVSGAYGGGVARVVGRKTAVLGVYAALLGATVFIGKTVPVGFVPAQDKE 578



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               +    IS + + I +   ++     L  I  + + +   L    L   + N+     
Sbjct: 879  NSALWVFPISVLLVFIVLAAFYESLTLPLAIILVVPMGMLSALAGVWLTRGDNNIFTQIG 938

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G S  + +++ +  R+   L     +      ++    L   + TS+A  + V+P
Sbjct: 939  LMVLVGLSAKNAILIVEFARE---LEQQGRTIVAAAVEASRLRLRPILMTSIAFVMGVVP 995

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +A+    G  +  +  I + FG++      + +     + +  
Sbjct: 996  LALSSGAGSEMRRAMGIAVFFGMLGVTLFGLLLTPVFYVVLRK 1038



 Score = 45.5 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPISIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S R+   +++ E  G  V  ++   A    L       G     FA+ +A   V
Sbjct: 425 A---GLSPREATYRAMREVSGPIVAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTV 481

Query: 807 VAASSSI 813
           ++A +S+
Sbjct: 482 ISAFNSL 488


>gi|71281350|ref|YP_270584.1| AcrB/AcrD/AcrF family protein [Colwellia psychrerythraea 34H]
 gi|71147090|gb|AAZ27563.1| AcrB/AcrD/AcrF family protein [Colwellia psychrerythraea 34H]
          Length = 1029

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/668 (11%), Positives = 189/668 (28%), Gaps = 43/668 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G++  L        L  +P   P                     
Sbjct: 9   KRPVFATVLNLLIITFGIVAFLM-----LPLREYPDIDPPIV---------NISTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       + R  ++ IT+ F   R  +   + V   +  
Sbjct: 55  SAAIVETKITQLLEDRISGIEGVKTINSNSRVGRSSITIEFNLDRDIDAATNDVRDRISR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L        +    + E  IV      +      +  +    R  +D+  + +   
Sbjct: 115 ALNNLPEQSDPPEVSKANDDESVIVWFVLQSE--TMSTLALTDYANRYIVDRFAVVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    + + +     T   +                          N  
Sbjct: 173 RVRVGGGRTYAMKIRLNRASMAARDITVQDIESTLRDE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   ++E      +                +                 +        +  
Sbjct: 214 LPAGRIESIDRDFSIRVERSYLTEQDFANMVINHSESKSVVRLGDVAEVFIGAQDDENMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +++ +    ++TA      +R              +     GS   
Sbjct: 274 RGNGKNMVGLGVIKQSKANTLDVVKTARKEMIAIRDSLPVGTTITNSYDSSVFIQGSIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   +V++V+F+ +   +  L+   ++ + +I ++  LS  G ++ L ++  +V
Sbjct: 334 VYNTLIIAMVMVVLVIFLFLGNVRATLIPAVTVPVALIGSMMALSWFGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       Q+   +   G       +  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVVLENIYRRIENGQAPLMAAYEGGREVAFAVIATTLVLVAVFVPLVFLS 453

Query: 482 GGAVRGFA---ITMGLSILISMFTAISIVRAMMIFIIRYKKM-----KSIDINPLSRFFL 533
           G   R F    I +  +++ S  TA+S+   M   ++++++      + +D         
Sbjct: 454 GNMGRLFTEFAIAIAAAVVFSSLTALSLTPMMCSKMLKHRERSSSFGQKLDRAFARFEAA 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +A    +     + + +  +   +            + +G   L +          
Sbjct: 514 YGRALASSIHQPLLIVLVLGLSLAAVFLLFNKLPSEYTPKEDRGNFFLIMQGAEGASYES 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
              N+  ++   + +Q        LVR+    G        L    K+  +        N
Sbjct: 574 NVKNMHKIEEKLLGYQAEGELDRVLVRVPGFGGSGGIAIVGLPEWDKRSIDTFSFINKIN 633

Query: 654 TEIVGPKI 661
            ++     
Sbjct: 634 RDVQNVTD 641



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 66/158 (41%), Gaps = 7/158 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +   +++ +   + +  +F+ +      + T+ L +   L    L G+  N+ +   ++ 
Sbjct: 854  LFVFLLALLITYLVLAAQFESFIHPFVILLTVPLALVGALAGLELMGMSLNIYSQIGIVM 913

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG +  + +++ +      +L    I+F + +  +  + L   V T+     S +P+ +
Sbjct: 914  LIGLAAKNGILIVEFAN---QLRDRGIAFEEALISAAQQRLRPIVMTTFTTVTSAIPLVL 970

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                G        + +  G+ +A+  ++FI      ++
Sbjct: 971  AVGPGAESRMVIGVVIFAGVSLASIFTLFIVPGAYYWL 1008



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 76/215 (35%), Gaps = 4/215 (1%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V L  V       Q  +  F+        L  ++    +++   +        I 
Sbjct: 249 ESKSVVRLGDVAEVFIGAQDDENMFRGNGKNMVGLGVIKQSKANTLDVVKTARKEMIAIR 308

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           + +P+ T            +  I +    +II+ + +++ I++        L    T+ +
Sbjct: 309 DSLPVGTTITNSYDSSVFIQGSIDEVYNTLIIAMVMVVLVIFLFLGNVRATLIPAVTVPV 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  ++   + FG   NL  + A++  IG  V+D +VV + +    +      +      
Sbjct: 369 ALIGSMMALSWFGFSINLLTLLALVLAIGLVVDDAIVVLENI---YRRIENGQAPLMAAY 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +   E     + T++      +P+    G++   F
Sbjct: 426 EGGREVAFAVIATTLVLVAVFVPLVFLSGNMGRLF 460


>gi|309811449|ref|ZP_07705235.1| export membrane protein SecF [Dermacoccus sp. Ellin185]
 gi|308434596|gb|EFP58442.1| export membrane protein SecF [Dermacoccus sp. Ellin185]
          Length = 375

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/307 (24%), Positives = 130/307 (42%), Gaps = 9/307 (2%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      I F+  R     ++ L    +   LF  GLN+G++F GG +L V       
Sbjct: 9   NDLFTGRRQIDFIGKRKRWYALTALLLALAAVGLFGRGLNFGLEFTGGSELRVPGVSSTH 68

Query: 591 LSVVRSNLESLQIGDISFQNFDGE-KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               R+          +      +  +  +R+Q +   +        +      E     
Sbjct: 69  DYDTRAEKAVQSATGSNADIVVTKLGSDTIRVQSEKLGNGTADATDAVKTSLAKEFGVSP 128

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
           +   +  +GP     +  K IV + +    + + + + F+ W  A  A+  L+ D+  T+
Sbjct: 129 SNVTSSFIGPSWGETVTHKAIVALFVFLAFVSVLLALYFRTWTMAAAALIALLHDLFFTV 188

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFRDLIDKSIN 766
           G +AL G+E     +   LT++GYS+ D VVV+D++R+N      T   SF    + ++N
Sbjct: 189 GIYALTGLEVTPATMIGFLTILGYSIYDTVVVFDKVRENTSEAFATGRRSFDQAANYAVN 248

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGG-----SVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +TL RS+ TS+ A + +  + V G      S +   A+ +  GI V   SSIFIA P L 
Sbjct: 249 QTLVRSINTSVVALLPISAILVVGALFIGPSTLLDIAVALFIGIAVGTFSSIFIATPALT 308

Query: 822 FIYDWRA 828
            +     
Sbjct: 309 DLRRREK 315


>gi|168702179|ref|ZP_02734456.1| Hydrophobe/amphiphile efflux-1 HAE1 [Gemmata obscuriglobus UQM
           2246]
          Length = 1219

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/528 (10%), Positives = 141/528 (26%), Gaps = 49/528 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD- 61
              +  +L  ++   G L           + ++P   P                 +++D 
Sbjct: 9   RPVFATVLSVVVTLAGALSV-----GALPVSQYPKVTPP---------------TIQIDC 48

Query: 62  -EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKV 115
                    + +  +  +   +   E +   + +   +    +T++F           +V
Sbjct: 49  NYPGASAQVVSETIASPIEQQVNGVEDMLYMTSQCTSDGTYTLTVTFKSGTDLNMAQVRV 108

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQ 169
              +     +L    +   + T       ++                   +  S   +  
Sbjct: 109 QNRVNLAFPQLPEVVRATGITTRKRSPELLMTVGITSPPEPGFPDGRYDQLYLSNYAVLN 168

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
             +++             +    +    DP RL     T A +       N         
Sbjct: 169 LKEELQRLPGISDVTIFGQRDYAMRLWVDPDRLAARDLTAADVLAALRQQNLPIAAGQIN 228

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                     Q  +     +  +              +    +       +         
Sbjct: 229 QPPAGSGQPYQVTLAAHGRLVDVE-------------EFEQVVVKVGPLGQLVKVKDVAR 275

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +                           + +   T E      A +     P     +  
Sbjct: 276 VELGAKTQDVANRFDDKPTVGLAIFILPEANAIETAEAVKGHMAKMGKDFPPGITYDIGY 335

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   S      +      LV +V+ + +   +  ++   ++ + +I T   ++L G
Sbjct: 336 DTSPFIRESIVEVFKSLRDAVVLVAVVVLVFLQTWRAAIIPLAAVPVAIIGTFGAMALAG 395

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI---FDS 466
            T+   ++ G+VL +G+ VD  I+V E ++ +  K  S   +           I      
Sbjct: 396 FTINNLTLFGLVLAVGIVVDDAIVVVEAVQHQLEKGLSPREATVRAMRDVSGPIVAVGVV 455

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                +    L    G   R FA+T+ +S +IS F ++++  A+   +
Sbjct: 456 LAAVFLPCAFLSGIVGAFFRQFALTIAVSTMISTFNSLTLSPALCALM 503



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 59/145 (40%), Gaps = 7/145 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  A+  +  + + I  T G  AL G   N   +  ++  +G  V+D +VV + +     
Sbjct: 370 WRAAIIPLAAVPVAIIGTFGAMALAGFTINNLTLFGLVLAVGIVVDDAIVVVEAV---QH 426

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV 806
                +S R+   +++ +  G  V   +      LP A   G   +    FA+ +A   +
Sbjct: 427 QLEKGLSPREATVRAMRDVSGPIVAVGVVLAAVFLPCAFLSGIVGAFFRQFALTIAVSTM 486

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
           ++  +S+   +P L  +     + A
Sbjct: 487 ISTFNSL-TLSPALCALMLKGPRPA 510



 Score = 45.1 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 43/115 (37%), Gaps = 6/115 (5%)

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + N+      + LIG +  + +++ +  +            R  I ++        + TS
Sbjct: 1003 DVNIFTQVGFVVLIGLACKNAILIVEFAK---VARDQGADLRTAILEACTLRFRPIMMTS 1059

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +A  + V+P+A+    G  +  +  I +  G++   +  +F+       +     
Sbjct: 1060 IAFMLGVVPLAIASGAGAEMRQALGIAVLGGMLGVTAFGVFLTPVFFALVDRLTR 1114


>gi|150376503|ref|YP_001313099.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Sinorhizobium
           medicae WSM419]
 gi|150031050|gb|ABR63166.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium medicae WSM419]
          Length = 1065

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/686 (10%), Positives = 179/686 (26%), Gaps = 47/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+      L +  + +FP  +P               + +    
Sbjct: 9   RPRFAAVISIVLTLAGLIA-----LTRLPVAQFPDIVPP-------------QVSITASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + S +     +         +    +T++FA     +     V  
Sbjct: 51  PGAGADVVEATVAQPIESKVVGVDDMLYMKSTSGADGTYSLTVTFAVGTDPDIATVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  + K++ +         + +   + +      +  S       +D I   
Sbjct: 111 RVALAEPVLPAEVKQSGVSVQKRSSSLMQVIAIHGENDEFDNLFLSNYATINVLDTIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D  RL  L  T   +       N        G + + D  
Sbjct: 171 PGVGDATLFGAQDYSMRIVLDIDRLTNLGLTPTDVINALKAQNVQAAIGRIGAQPMTDDP 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  ++ +  ++                +    +                ++       
Sbjct: 231 LFQLNIQTQGRLT-------------DPAQFGDVVLRAGADGSFVRIRDVAHVELGSVSS 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +    +           +     E        L A         V          
Sbjct: 278 DSTARINGKPVAMIGTYQAPGANALAATEGVQQALERLSAAFPEGLTYSVSYDTSDFVQA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV+IV+F+ +   +  L+   ++ + ++ T A++  +G +L   S+
Sbjct: 338 SVENVEHTLLEAFALVIIVVFLFLGNWRATLIPLIAVPVALVGTFAVILAMGFSLNTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E +          S   +  +        I    +  L   V
Sbjct: 398 LALVLAIGIVVDDAIVVVENVERVMEENPGMSAAEASRLAMGEITGAIVAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDIN 526
            + F  G +    + FA+ + +S++IS   A+++  A+   +++            I   
Sbjct: 458 PVAFIPGLSGQLFQQFAVAVSVSMVISAINALTLSPALCAILLKPHHGPKRGVLGWISRG 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                            RA    V +++                   + +G     +   
Sbjct: 518 IDRTRNGYAHLAGGIARRAILGLVLLAVAIGASGWLFRIVPTGFLPSEDQGAFFAEIRLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +   + +  ++    S +                    +    +  +K       
Sbjct: 578 EGASFNRTDAVVRQVESLLGSIEGVANVTTVTGYSFLDGIAKSSSAFAIVTMKPFAERES 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++             +    +  
Sbjct: 638 ETASVNAAIATVMAQGAAIRNAQVFA 663



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 81/250 (32%), Gaps = 9/250 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + +     + S+   +         +    R     G         + +           
Sbjct: 790  NAAGDMVPVASVARVNYIVGPQSIVRYNNYRSITLNGQPAPGVSSGQALAAMEQISAATL 849

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY---IWIRFKWYFALGAITTLILDITK 706
                +        +EL   G   VI++      Y   + +   W   +  + ++ + +  
Sbjct: 850  PPGYSFEWTGTALQELEAAGQTTVILALAVFFAYLFLVALYESWTIPIPVLLSVSVGVAG 909

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L    L G+ F++ A   ++ LI  +  + +++ +  +         +   D   +   
Sbjct: 910  ALVAVLLAGLSFDIYAQIGLVVLIALASKNAILIVEFAK---FQREKGVPIVDAAVEGAR 966

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + TS A  + ++P+    G+ +    +    +A G++ A+   IFI   + +  
Sbjct: 967  TRFRAVMMTSFAFIVGLVPLVTAEGAGMLSRRAVGTGVAGGMLAASLLGIFIIPALYVVF 1026

Query: 824  YDWRAKNARI 833
               R +  ++
Sbjct: 1027 QWLRERGHKL 1036



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 91/243 (37%), Gaps = 5/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V          D + +        +   Q    +++A T  ++   ++++   
Sbjct: 260 SFVRIRDVAHVELGSVSSDSTARINGKPVAMIGTYQAPGANALAATEGVQQALERLSAAF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  +      ++ +   ++I +++    W   L  +  + + + 
Sbjct: 320 PEGLTYSVSYDTSDFVQASVENVEHTLLEAFALVIIVVFLFLGNWRATLIPLIAVPVALV 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N  ++ A++  IG  V+D +VV + + + +      +S  +    ++
Sbjct: 380 GTFAVILAMGFSLNTVSLLALVLAIGIVVDDAIVVVENV-ERVMEENPGMSAAEASRLAM 438

Query: 766 NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  V  ++      +P+A      G +   FA+ ++  +V++A +++ ++  +   
Sbjct: 439 GEITGAIVAITLVLLSVFVPVAFIPGLSGQLFQQFAVAVSVSMVISAINALTLSPALCAI 498

Query: 823 IYD 825
           +  
Sbjct: 499 LLK 501


>gi|323702490|ref|ZP_08114154.1| acriflavin resistance protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323532629|gb|EGB22504.1| acriflavin resistance protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 1045

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/520 (10%), Positives = 145/520 (27%), Gaps = 40/520 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++  +   +GL            ++ +P+                  +     
Sbjct: 9   KRPKMMTMVILVFVILGLYT-----YRHIGVELYPAINTPFV---------SISVSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S + +      +       I L F  +      A  V   L  
Sbjct: 55  GAEEIETQVVKPIEDAVSSISQLKTITSTSSAGLANINLEFELTADANQAAIDVQKKLDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L       +++        +++   + D       + + ++I++R   +       
Sbjct: 115 LRQRLPDGADDPVVIKRDMNASPVMMLALSGDASQVELYDLANDVIKER---LQRVAGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  + D S+L     +  ++       N +             +     
Sbjct: 172 EVNIFGGQQREIKIDIDRSKLEGYGLSINQVVNQLRAENLNDPSGRMDRPEAEYNVRVLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 EI  I +                                   +      V    
Sbjct: 232 EFRSVQEIEDIQI--------------------PTASGYSVPLKDIATVTDGYKEVRVYS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            ++  S            A ++          +   N      S + 
Sbjct: 272 RVNGQNAVGIQIYKQSDASMVAVGNAVKQELASIQRQLPAGMNLKISRDNSDFVQRSVNG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +            VLF+ +   +   +   +I  +++ T+ ++   G T  + S+ G+ 
Sbjct: 332 TRSNILEGIITTSFVLFIFLRQWRSSFIVLLAIPTSLMATVMMMYFCGFTFNMMSLMGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSL---DMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD +I+V E I    R  ++ + +          A   I  S++        + 
Sbjct: 392 LCIGILVDDSIVVLENIHRHIRMGKTPWQAAIEGRSEIGMAAVAITLSDVVVFTPLAFMN 451

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
              G   R F +T+  + L S+F + ++   +   + +  
Sbjct: 452 GMIGQFFRQFGLTIVFATLFSLFVSFTLTPMLASRLYKEG 491



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 75/239 (31%), Gaps = 10/239 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           ++                       V +Q       +   V   VK+++  I        
Sbjct: 254 LKDIATVTDGYKEVRVYSRVNGQNAVGIQIYKQSDASMVAVGNAVKQELASIQRQLPAGM 313

Query: 654 TEIVGPKISRELIR--KGIVGVIISAIAMLIYIWIRF--KWYFALGAITTLILDITKTLG 709
              +    S  + R   G    I+  I    ++   F  +W  +   +  +   +  T+ 
Sbjct: 314 NLKISRDNSDFVQRSVNGTRSNILEGIITTSFVLFIFLRQWRSSFIVLLAIPTSLMATVM 373

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                G  FN+ ++  +   IG  V+D +VV + +    +      +      +  +E  
Sbjct: 374 MMYFCGFTFNMMSLMGLALCIGILVDDSIVVLENIH---RHIRMGKTPWQAAIEGRSEIG 430

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +V  +++  +   P+A      G     F + + F  + +   S  +   +   +Y 
Sbjct: 431 MAAVAITLSDVVVFTPLAFMNGMIGQFFRQFGLTIVFATLFSLFVSFTLTPMLASRLYK 489



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 83/223 (37%), Gaps = 7/223 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E    +              V++ ++K++ +I   +          +  RE   +    +
Sbjct: 809  EDKQRIITVTAGVKDRPLGNVMDDIRKELAKIKLPAGYSIEFSGQDQSMRESFSELASAL 868

Query: 674  IISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++S I + ++ + +   +   L  + +L L I   L   AL     N+  +  ++ L G 
Sbjct: 869  VLSVILVYMVLVMLYESFSTPLIRMLSLPLGIVGALTALALTKNNINVFTLIGIIMLDGL 928

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               +  ++ D       L     + ++ + ++ N  L   + T++     +LP A+    
Sbjct: 929  VAKNGTLLID---YTHTLMGRGRTLKEALIEACNTRLKPILMTTITMVAGMLPTALSITE 985

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G       A  +  G++ +   ++F+   +     D++ K  +
Sbjct: 986  GAENRSGMAWVLIGGLLTSTIFTLFVIPVVYTIFNDYKTKWHK 1028


>gi|83720423|ref|YP_442965.1| multidrug efflux protein [Burkholderia thailandensis E264]
 gi|167620103|ref|ZP_02388734.1| multidrug efflux protein [Burkholderia thailandensis Bt4]
 gi|83654248|gb|ABC38311.1| RND multidrug efflux transporter PA2018 [Burkholderia thailandensis
           E264]
          Length = 1043

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 73/622 (11%), Positives = 171/622 (27%), Gaps = 41/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+            + ++P   P   +SL        +       
Sbjct: 8   RPVFAWVISLFIMLGGIFAI-----RALPVAQYPDIAPP-VVSL--------YATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +        +    Q  ++L+F      +  A  V   L+ V
Sbjct: 54  AQVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      + + ++     +      +E         +  +   E   +
Sbjct: 114 EARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASANVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     ++                                +      I            
Sbjct: 233 VLADAPLT-------------TPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSF 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L     P     +          S S  
Sbjct: 280 VNGKTATGMGIKLAPGSNAVATEKRVRATMDELAKFFPPGVKYQIPYETASFVRVSMSKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+F+ +   +  L+    + + ++ T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLVEAGVLVFAVMFLFMQNFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529
              G   R FA  + +SI  S F A+S+  A+   +++                +     
Sbjct: 460 GAVGNIYRQFAFALAVSIGFSAFLALSLTPALCATLLKPVADDHHEKDGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R   W V    L +  ++ +          + +G   + V+  +  
Sbjct: 520 STHRYTQRVGRVLKRPLRWLVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNF 611
            L+    ++  ++    +    
Sbjct: 580 PLAETMQSVRRVEEYVRTHSPS 601



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 71/203 (34%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    ++ + K     V       T         +++   +   ++    M +++ 
Sbjct: 300 ATEKRVRATMDELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +   +   K++ +  G  V  ++      +PMA +GG+V      FA  +A
Sbjct: 416 -ERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 65/177 (36%), Gaps = 9/177 (5%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFF 711
                 +   E +      ++ +   +++++ +      W      +  + L +   +   
Sbjct: 851  YAWSGQSYEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAVMLVVPLGVIGAVAGV 910

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             L G+  ++     ++  IG S  + +++ +  +    L    +S  D   ++    L  
Sbjct: 911  TLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKD---LVAQGMSLADAALEAARLRLRP 967

Query: 772  SVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
             V TS+A  + VLP+    G +     AI      G++ A   +IF+     + +  
Sbjct: 968  IVMTSLAFGVGVLPLAFATGAASGAQIAIGTGVLGGVISATLFAIFLVPLFFVCVGR 1024


>gi|89256208|ref|YP_513570.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           holarctica LVS]
 gi|167009755|ref|ZP_02274686.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           holarctica FSC200]
 gi|254367534|ref|ZP_04983560.1| preprotein translocase, subunit D, membrane protein secD
           [Francisella tularensis subsp. holarctica 257]
 gi|89144039|emb|CAJ79287.1| preprotein translocase, subunit D, membrane protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|134253350|gb|EBA52444.1| preprotein translocase, subunit D, membrane protein secD
           [Francisella tularensis subsp. holarctica 257]
          Length = 645

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 163/548 (29%), Positives = 282/548 (51%), Gaps = 55/548 (10%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + +L   PN+L          A+  N ++LGLDLRGG +L+LE D    ++  L   
Sbjct: 108 IIAMSMLSNSPNWLS---------ALGANPMNLGLDLRGGMYLMLEADTKTSIDAQLDNS 158

Query: 74  SDELRSFLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFL 119
              + S  K   I + S+ +                  ++++ A+S   + +   ++   
Sbjct: 159 LSIILSAAKDNSINISSLTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLST-- 216

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                        N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E 
Sbjct: 217 -----DFIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEV 271

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDG 238
           ++ + G +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G
Sbjct: 272 SVAQAGDNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNG 331

Query: 239 N----QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                 Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+
Sbjct: 332 RGYQSYYSLKGTAVAGGADIIGASPSIDRQTGAPIVMVELDRSAASHFRQITGKNIGNPM 391

Query: 295 AVVLDGRVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAML 335
            V+L                           V       G          + A  LA M+
Sbjct: 392 GVMLVNTTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMI 451

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           ++G+L + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ 
Sbjct: 452 KSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVIALIAVVVFILVYYHVFGIIANIALV 511

Query: 396 LNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           +N+IL +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +
Sbjct: 512 MNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHI 571

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G+ +A++TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+
Sbjct: 572 GYEKAFTTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFV 631

Query: 515 IRYKKMKS 522
              +K   
Sbjct: 632 YGKRKKLE 639



 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 101/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + +   F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYHV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  +I  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIILALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|32475946|ref|NP_868940.1| RND multidrug efflux transporter MexF [Rhodopirellula baltica SH 1]
 gi|32446489|emb|CAD76325.1| RND multidrug efflux transporter MexF [Rhodopirellula baltica SH 1]
          Length = 1037

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/627 (14%), Positives = 171/627 (27%), Gaps = 48/627 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +           +++FP   P               + +    
Sbjct: 8   RPIFATVISIVIVIAGAVS-----FFGLPIEKFPPITPPT-------------VQVTAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   EG+   S          +T++F      +  +  V  
Sbjct: 50  PGANARTVAETVAAPIEQAVNGVEGMIYMSSTSTNEGLYTLTVTFELGMDLDIASVLVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L  + ++  + T      ++              +  S   +  R D+I   
Sbjct: 110 LVGSAEASLPQEVRQQGITTKKRSTQTLQFIALTSPGGAHDGLFLSNFSLDVR-DEISRI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP  L+Q   TT  +       N        G        
Sbjct: 169 KGVGDVQSFGDGDYSMRVWLDPRLLKQRGLTTEDVVSVISEQNVQVAAGQIGAPPAESGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V  +   S +              +    I                 I       
Sbjct: 229 AFQFSVNTQGRFSSVE-------------QFQDIIVRTGDNGEVLRLGDLARIELGAEAY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR--AGSLPIKLNIVEERNVGAD 355
                 T               +   T E   I    L   A         V        
Sbjct: 276 TYSSSFTGDAAATLAIYQLPGANALETAEAIRIKMDELSSAANWPDDVEYQVAYDATEFV 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S +    T A+   LV+ V+F+ +   +  +V   +I +++I T A+++ +G +L + 
Sbjct: 336 TASITEVYKTLAMAIALVVFVIFVFLQDWRATVVPVAAIPVSLIGTFAIMAGIGFSLNML 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+ GIVL IG+ VD  I+V E +        S   +     S     +  + +  L   V
Sbjct: 396 SLFGIVLAIGIVVDDAIVVVENVSRHIADGLSSRDAAVKAMSEITGPVIATTLVLLAVFV 455

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
              F     G   R FA+T+  S++IS   A+++  A+    +R           L    
Sbjct: 456 PCAFMPGITGELFRQFALTISASVIISTINALTLSPALCAIFLRPPTETKFIGFRLFNQA 515

Query: 533 LIPDCIAIQFMRAR------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                       AR         V    L       L          + +G + + V   
Sbjct: 516 FERTTAIYGATVARLVRLTLVVSVASIALVMATGWILTQLPTGFVPDEDQGVLFVNVQLP 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDG 613
                      ++ L           G
Sbjct: 576 DAASKERTDEVIKDLDQIFEQTPGVHG 602



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 80/203 (39%), Gaps = 7/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    ++ +         +      +      +        + + I+ +  +I+++
Sbjct: 301 ETAEAIRIKMDELSSAANWPDDVEYQVAYDATEFVTASITEVYKTLAMAIALVVFVIFVF 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           ++  W   +  +  + + +  T    A  G   N+ ++  ++  IG  V+D +VV + + 
Sbjct: 361 LQ-DWRATVVPVAAIPVSLIGTFAIMAGIGFSLNMLSLFGIVLAIGIVVDDAIVVVENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +S RD   K+++E  G  + T++      +P A      G +   FA+ ++
Sbjct: 419 --SRHIADGLSSRDAAVKAMSEITGPVIATTLVLLAVFVPCAFMPGITGELFRQFALTIS 476

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             ++++  +++ ++  +      
Sbjct: 477 ASVIISTINALTLSPALCAIFLR 499



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/186 (10%), Positives = 66/186 (35%), Gaps = 10/186 (5%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLI--LDITKTL 708
             + E  G     +    G   +  ++ + + + +  +++ + +  A+  ++    +   L
Sbjct: 851  FSYEWTGMSFQEKQASGGQYLIFGLAILFVFLVLAAQYESWTSPAAVIAVVPLAALGVAL 910

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                L G + N      ++ L+  +  + +++ +   +         S RD    +    
Sbjct: 911  SLM-LRGSDNNTYTQIGIVLLVALASKNAILIVEFASEQRAE---GKSPRDAATTAAKLR 966

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + T+ ++ +  LP+ V    G +   +    +  G++ A   ++ +     +    
Sbjct: 967  FRAILMTAFSSILGFLPLLVATGAGAASRQAVGTAVVGGMIAATVFALLLVPTFFVVFRT 1026

Query: 826  WRAKNA 831
               + A
Sbjct: 1027 LSERMA 1032


>gi|253997659|ref|YP_003049723.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylotenera mobilis JLW8]
 gi|253984338|gb|ACT49196.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylotenera mobilis JLW8]
          Length = 1062

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/561 (12%), Positives = 156/561 (27%), Gaps = 33/561 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  +I  +G L             +FP   P   I           L     
Sbjct: 7   KRPVMAIVLSLIIVFLGFLSI-----RTLPTSQFPDIAPPRVI---------VSLAYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQ 120
             D +     +  +   + +      V       +  I + F            V   L 
Sbjct: 53  SADVLVQSSLITIERAINGVPGMKYIVSDATSAGEATIQVIFGLGTDPNQAMINVKTRLD 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L    +   +V    +   ++          +             I +I      
Sbjct: 113 QVMSRLPELVQLEGVVVERVQPSMLMYINLFSKDKDADEKFLYNYANVNLIPEIQRVNGI 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P R+R    +  ++       +   +    G      +   +
Sbjct: 173 ASAKILGSRQYAMRIWLNPDRMRAYKVSVEEVMKAMNEQSIIGRPGRLGQSSGIAAQSKE 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y++  +                 K  +    I                 +          
Sbjct: 233 YVLVYQGR-------------YNKPEQYEDIIIRASSDGEILKLKDIAKVELGSEFFDIY 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   +  I       + +  IE        L+          ++         S  
Sbjct: 280 SNKDGYPSSAIILKQNYGSNASEVIEQVKEKMEELKGTFPAGMEYEIDYDVSKFLDASID 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+F+ +   +  L+   ++ +++I T   + + G T+ L ++  +
Sbjct: 340 KVLHTLVEAFILVALVVFIFLGDWRSTLIPILAVPVSLIGTFFCMQIFGITINLITLFAL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           VL IG+ VD+ I+V E +  +  +N   S + +           I    +      V + 
Sbjct: 400 VLAIGIVVDNAIVVVEAVHAKMEENAELSPYKATQQVLGEIGGAIVAITLVMTAVFVPVA 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F  G      R F+ITM  SI+IS   A+S+   +   +++          P+  F  + 
Sbjct: 460 FMTGPVGVFYRQFSITMAASIVISGVVALSLTPVLCAMLLKNHHGHVKRKTPIGYFIDVF 519

Query: 536 DCIAIQFMRARFWGVGISILF 556
           + +  +        +   +  
Sbjct: 520 NRVFEKLTGRYTNFLSKIVTL 540



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 43/265 (16%), Positives = 101/265 (38%), Gaps = 8/265 (3%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                   +    + + A+   ++  ++   +     +      + +      +  +   
Sbjct: 237 YQGRYNKPEQYEDIIIRASSDGEILKLKDIAKVELGSEFFDIYSNKDGYPSSAIILKQNY 296

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYI 684
               + V+E VK+K+ E+           +   +S+ L   I K +  ++ + I + + +
Sbjct: 297 GSNASEVIEQVKEKMEELKGTFPAGMEYEIDYDVSKFLDASIDKVLHTLVEAFILVALVV 356

Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +I    W   L  I  + + +  T     +FGI  NL  + A++  IG  V++ +VV + 
Sbjct: 357 FIFLGDWRSTLIPILAVPVSLIGTFFCMQIFGITINLITLFALVLAIGIVVDNAIVVVEA 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           +   M+     +S      + + E  G  V  ++      +P+A   G V      F+I 
Sbjct: 417 VHAKMEENA-ELSPYKATQQVLGEIGGAIVAITLVMTAVFVPVAFMTGPVGVFYRQFSIT 475

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           MA  IV++   ++ +   +   +  
Sbjct: 476 MAASIVISGVVALSLTPVLCAMLLK 500



 Score = 44.3 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 80/248 (32%), Gaps = 10/248 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +     Q  +    + +        + A+    +   K + E+  
Sbjct: 789  YVKNEDGEMVPYSSFMKMKKIQGPNEITRYNLYNSATIRATPAKGYTTDDAIKAVQEVAA 848

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIYIWI---RFKWYFALGAITTLILD 703
             +     +I    +S +  ++G   +II + + + +Y+ +      +   L  I +L   
Sbjct: 849  ATLPHGYDIGWEGLSFDEAKRGNEAMIIFAVVLVFVYMVLAAQYESFLLPLAVILSLPAG 908

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +  T       G+  ++ A   ++ L+G    + V++ +     ++ +   +S  +   +
Sbjct: 909  VFGTFFLLKTLGLANDVYAQLGLVMLVGLLGKNAVLIVEFA---VQKHEQGMSVAEAAIE 965

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    ++P+ V    G     +       G++      + +   + 
Sbjct: 966  GARARFRPILMTSFAFIAGLIPLVVATGAGAVGNRTIGSSALGGMLFGTVFGVILIPGLY 1025

Query: 821  LFIYDWRA 828
                    
Sbjct: 1026 YLFAKMEE 1033


>gi|123968465|ref|YP_001009323.1| preprotein translocase subunit SecF [Prochlorococcus marinus str.
           AS9601]
 gi|123198575|gb|ABM70216.1| preprotein translocase subunit [Prochlorococcus marinus str.
           AS9601]
          Length = 304

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/230 (26%), Positives = 116/230 (50%), Gaps = 8/230 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +   +    + +      N L+ ++           ++  ++  I  +   S      
Sbjct: 77  REISINKNFINNIKLQFQNNNKLISIRTPYLSIEESNNLITNLENIIGPLNYESKDSRL- 135

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GPK+ + L+   +  +++S  A+ +YI IRF   +AL A+  L  D+    G F+  G
Sbjct: 136 -IGPKLGKRLLTNCVTSLLVSLFAISLYITIRFDKKYALFALIALFHDLLIVFGIFSWLG 194

Query: 716 I----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           I    E N     ++LT+ GYSVND VV++DR+R+N+K  +    + + I  S+NE+  R
Sbjct: 195 IILSVEVNSLFAVSLLTIAGYSVNDTVVIFDRIRENLK--SKEEGYNETIQLSVNESFRR 252

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + +TS+   I +L + ++G   +  F++ ++ GI+V + SSI +A  +LL
Sbjct: 253 TTFTSITTLIPLLSIILFGSYSLFWFSLALSVGIIVGSYSSILLAPSLLL 302


>gi|225423381|gb|ACN91205.1| CmeB [Campylobacter upsaliensis]
          Length = 1041

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 80/652 (12%), Positives = 181/652 (27%), Gaps = 33/652 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++P+  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAIS-----LSSLPVEQYPTLTPPTV---------SVSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQG 121
              ++  + +  ++  + ++       +     Q ++T  F            V   +  
Sbjct: 55  AQTISESVAIPIEDAINGVENMIYLESTSSASGQMRLTAYFDIGTDPNQATVDVNNRISS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +KL    KK  +         + +          +A++    I    ID I       
Sbjct: 115 ATAKLPEAVKKLGVTVRKSNSSILEVIALYSTDGSMNAVDIYNYITLNIIDDIKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+ L +   T+ ++       N        G   +       Y
Sbjct: 175 DAFAIGNRNYSMRVWLDPNLLNKYQITSKEVLSAIEEQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +               + +    I                +I       +   
Sbjct: 235 SITMQGRL-------------KSSQEFGEVILRVNEDGSFLRLKDVADIELGSQQYVAQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I + ++  +   T +  G     L           V          S   
Sbjct: 282 RYDGNDAVPIIINLQSGANSVNTAKLVGEKLEELSKNFPAGLAYQVPYDTTTFVKASIYE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ ++++ T A L LLG ++ L ++  +V
Sbjct: 342 VLKTFVEALILVIIVMYLFLKNFRSTLIPMIAVPVSLLGTFAGLYLLGFSVNLLTLFALV 401

Query: 422 LGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVV 476
           L IG+ VD  I+V E +        N SV  +  +      S    I        I    
Sbjct: 402 LAIGIVVDDAIIVVENVDRILHEDPNISVKDATIIAMEEVASPVISIVLVLCAVFIPVSF 461

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +  F G   + FA+T+ +S+ IS F A+++  ++    ++    +          F    
Sbjct: 462 ISGFVGEIQKQFALTLAISVAISGFVALTLTPSLCALFLKRNNGEPFVFVKKFNDFFDWS 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                   A      +  +     +     +            +        ++L    S
Sbjct: 522 TKIFSAGVAYILKRVVRFVMIFGIMLGGTYYLYQSVPSSLVPTEDQGTVMSIINLPAASS 581

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
              ++   D   +N     N +       G  +      E       ++   
Sbjct: 582 LHRTIDFIDNMSKNDIDGLNGVKASMALIGFDLFTNSPKENAGAMFIQLEDW 633



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 87/243 (35%), Gaps = 13/243 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +SV   +++    +++++  P     
Sbjct: 266 DVADIELGSQQYVAQGRYDGNDAVPIIINLQSGANSVNTAKLVGEKLEELSKNFPAGLAY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I + +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 QVPYDTTTFVKASIYEVLKTFVEALILVIIVMYLFLKNFRSTLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   NL  + A++  IG  V+D ++V + +   +     +IS +D    ++ E    
Sbjct: 386 YLLGFSVNLLTLFALVLAIGIVVDDAIIVVENV-DRILHEDPNISVKDATIIAMEEVASP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + +       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFIPVSFISGFVGEIQKQFALTLAISVAISGFVALTLTPSLCALFL 500

Query: 825 DWR 827
              
Sbjct: 501 KRN 503



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 74/205 (36%), Gaps = 10/205 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALG 695
             V +++T+                        G +  ++  I + + +  ++ +W   L 
Sbjct: 837  AVMEELTKEFLGEEYTLAWSGTSYQEATNSNTGSIAFVLGMIFVFLILAAQYERWLMPLA 896

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             IT +   +  +L F  L     ++     +L LIG S  + +++ +   +         
Sbjct: 897  VITAVPFALFGSLLFIWLRDFYNDVYFQTGLLLLIGLSAKNAILIVEFAMEE--HLKKGK 954

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
            S  D   ++        V TS+A  + +LP+ +    G +   +    +  G++ A++ +
Sbjct: 955  SIFDASVEAAKLRFRPIVMTSLAFTLGILPLVISSGAGSAARHALGTGLIGGMIAASTLA 1014

Query: 813  IFIAAPILLFIYDWR----AKNARI 833
            IF        +  +      K  ++
Sbjct: 1015 IFFVPLFFYLLESFNAWLDKKRGKV 1039


>gi|158522905|ref|YP_001530775.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Desulfococcus
           oleovorans Hxd3]
 gi|158511731|gb|ABW68698.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfococcus oleovorans Hxd3]
          Length = 1059

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/678 (10%), Positives = 167/678 (24%), Gaps = 41/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L           + ++P   P               + ++   
Sbjct: 9   RPVFAWVIAIIMMIGGGLAI-----YNMPISQYPPIAPP-------------SIAIDAFY 50

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S      +I L+F      +    +V  
Sbjct: 51  PGASAETVENSVVQIIEQKMTGFDKLLYMTASSDASGSGRIELTFQPGTDPDLAWSQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   S L    ++  +  +      +++     D    +  +            +   
Sbjct: 111 KLQLAMSSLPDVIQRQGVKVSKSTRNYLLIVGLICDDGSMNGNDLRDYAQSSLEKVLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L     T   +     + N       FG        
Sbjct: 171 PGVGEVESFGSQ-YAMRVWLDPDKLNSYHMTIEDVIAALRVYNVEVSAGQFGGMPSVKGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +        +                     
Sbjct: 230 RLNASIIVQSLL-------------KTPEEFADIPLRIDADGAVVRLGDVARTELGTERY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +              A  +   T +        L     P                
Sbjct: 277 DVDALFNGNPAAALAIRQAAGANALDTADAIRAKLDELSEYFPPGVKVFYPFDTTPFIRV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +++F+ +   +  L+   ++ + ++ T A+L   G T+ + ++
Sbjct: 337 AIDDVVKTLFEAILLVFLIMFLFLGNIRATLIPTLAVPVVILGTFAVLGFFGYTINMLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +    + +      +         S +    +        
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMHDEGLGPRQATAKSMEEITSALIGIGLVLAAVFGP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F++T+  ++L+S+  A+ +   +   ++R   M+      +   F 
Sbjct: 457 MAFFGGSTGVIYRQFSVTIIAAMLLSVVVALILTPVLCASLLRPVAMREEKAKTVLAPFR 516

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  +         G +I   +          L               A  P +   
Sbjct: 517 RFYHRFDKGFNWARDRYGAAIGNILQRRYRYMVLYLLIVAALAFLFLRMPTAYLPDEDQG 576

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V      L  G    Q                 ++V     L                  
Sbjct: 577 VMLFQAQLPSGSTEEQTSKVLNEVKAYFLENETEAVDSVMTLSGRSFAGGGQNVGMGFVR 636

Query: 654 TEIVGPKISRELIRKGIV 671
            +    +   +L  K +V
Sbjct: 637 LKDWDLRDRPDLKVKAVV 654



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 76/198 (38%), Gaps = 9/198 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    L+ + +     V +    +T         ++++     +++  + M +++ 
Sbjct: 302 DTADAIRAKLDELSEYFPPGVKVFYPFDTTPFIRVAIDDVVKTLFEAILLVFLIMFLFLG 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + I  T      FG   N+  + A++  IG  V+D +VV + + 
Sbjct: 362 ---NIRATLIPTLAVPVVILGTFAVLGFFGYTINMLTMFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               ++   +  R    KS+ E     +   +       PMA +GGS       F++ + 
Sbjct: 418 -ERIMHDEGLGPRQATAKSMEEITSALIGIGLVLAAVFGPMAFFGGSTGVIYRQFSVTII 476

Query: 803 FGIVVAASSSIFIAAPIL 820
             ++++   ++ I  P+L
Sbjct: 477 AAMLLSVVVAL-ILTPVL 493



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 668  KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                G++ +   ++I++    +   W   +  +  L L +   +    L G   ++    
Sbjct: 875  TAQTGLLYTFSTIVIFLCLAALYESWTVPISVMLALPLGLIGGMIASMLRGFPNDVYFQI 934

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LT++G +  + +++   ++  M      +   D         L   V TSMA    VL
Sbjct: 935  GLLTVVGLTTKNAILI---VQFAMAKSAEGMRLVDATLMGARLRLRPIVMTSMAFGFGVL 991

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+ +    G     +    +  G++ A   +IF      + + +   +  
Sbjct: 992  PLTLATGAGAGAQTAIGTGVLGGMITATFLAIFFIPLFYVIVVNLFGRKK 1041


>gi|327543544|gb|EGF29963.1| multidrug efflux RND transporter MexF [Rhodopirellula baltica WH47]
          Length = 1037

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 89/627 (14%), Positives = 171/627 (27%), Gaps = 48/627 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +           +++FP   P               + +    
Sbjct: 8   RPIFATVISIVIVIAGAVS-----FFGLPIEKFPPITPPT-------------VQVTAVY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   EG+   S          +T++F      +  +  V  
Sbjct: 50  PGANARTVAETVAAPIEQAVNGVEGMIYMSSTSTNEGLYTLTVTFELGMDLDIASVLVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L  + ++  + T      ++              +  S   +  R D+I   
Sbjct: 110 LVGSAEASLPQEVRQQGITTKKRSTQTLQFIALTSPGGAHDGLFLSNFSLDVR-DEISRI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP  L+Q   TT  +       N        G        
Sbjct: 169 KGVGDVQSFGDGDYSMRVWLDPRLLKQRGLTTEDVVSVISEQNVQVAAGQIGAPPAESGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V  +   S +              +    I                 I       
Sbjct: 229 AFQFSVNTQGRFSSVE-------------QFQDIIVRTGDNGEVLRLGDLARIELGAEAY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR--AGSLPIKLNIVEERNVGAD 355
                 T               +   T E   I    L   A         V        
Sbjct: 276 TYSSSFTGDAAATLAIYQLPGANALETAEAIRIKMDELSSAANWPDDVEYQVAYDATEFV 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S +    T A+   LV+ V+F+ +   +  +V   +I +++I T A+++ +G +L + 
Sbjct: 336 TASITEVYKTLAMAIALVVFVIFVFLQDWRATVVPVAAIPVSLIGTFAIMAGIGFSLNML 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+ GIVL IG+ VD  I+V E +        S   +     S     +  + +  L   V
Sbjct: 396 SLFGIVLAIGIVVDDAIVVVENVSRHIADGLSSRDAAVKAMSEITGPVIATTLVLLAVFV 455

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
              F     G   R FA+T+  S++IS   A+++  A+    +R           L    
Sbjct: 456 PCAFMPGITGELFRQFALTISASVIISTINALTLSPALCAIFLRPPTETKFIGFRLFNQA 515

Query: 533 LIPDCIAIQFMRAR------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                       AR         V    L       L          + +G + + V   
Sbjct: 516 FERTTAIYGATVARLVRLTLVVSVASIALVMATGWILTQLPTGFVPDEDQGVLFVNVQLP 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDG 613
                      ++ L           G
Sbjct: 576 DAASKERTDEVIKDLDQIFEQTPGVHG 602



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/203 (12%), Positives = 80/203 (39%), Gaps = 7/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    ++ +         +      +      +        + + I+ +  +I+++
Sbjct: 301 ETAEAIRIKMDELSSAANWPDDVEYQVAYDATEFVTASITEVYKTLAMAIALVVFVIFVF 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           ++  W   +  +  + + +  T    A  G   N+ ++  ++  IG  V+D +VV + + 
Sbjct: 361 LQ-DWRATVVPVAAIPVSLIGTFAIMAGIGFSLNMLSLFGIVLAIGIVVDDAIVVVENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +S RD   K+++E  G  + T++      +P A      G +   FA+ ++
Sbjct: 419 --SRHIADGLSSRDAAVKAMSEITGPVIATTLVLLAVFVPCAFMPGITGELFRQFALTIS 476

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             ++++  +++ ++  +      
Sbjct: 477 ASVIISTINALTLSPALCAIFLR 499



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/186 (10%), Positives = 66/186 (35%), Gaps = 10/186 (5%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLI--LDITKTL 708
             + E  G     +    G   +  ++ + + + +  +++ + +  A+  ++    +   L
Sbjct: 851  FSYEWTGMSFQEKQASGGQYLIFGLAILFVFLVLAAQYESWTSPAAVIAVVPLAALGVAL 910

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                L G + N      ++ L+  +  + +++ +   +         S RD    +    
Sbjct: 911  SLM-LRGSDNNTYTQIGIVLLVALASKNAILIVEFASEQRAE---GKSPRDAATTAAKLR 966

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + T+ ++ +  LP+ V    G +   +    +  G++ A   ++ +     +    
Sbjct: 967  FRAILMTAFSSILGFLPLLVATGAGAASRQAVGTAVVGGMIAATIFALLLVPTFFVVFRT 1026

Query: 826  WRAKNA 831
               + A
Sbjct: 1027 LSERMA 1032


>gi|282857955|ref|ZP_06267158.1| efflux transporter, AcrB/AcrD/AcrF family, inner membrane component
           [Pyramidobacter piscolens W5455]
 gi|282584214|gb|EFB89579.1| efflux transporter, AcrB/AcrD/AcrF family, inner membrane component
           [Pyramidobacter piscolens W5455]
          Length = 1034

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/616 (11%), Positives = 186/616 (30%), Gaps = 43/616 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR    ++I    +   G+       L Q  ++R P+      +             LE 
Sbjct: 8   MRRPVGVIIGTLALIVFGIY-----GLYQIGIERMPNVDIPVVM---------VRTTLEG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V+  +    +   + ++       S  + ++ I + F   R  +N A  V     
Sbjct: 54  ASPAIVDNDVTDVLEARINTIEGIKNISSSSYEGRSFIIVEFVLERDIDNAAADVRGKAS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S L  D K   +      +  ++          +   + S  + +  ++++   +  
Sbjct: 114 MVQSSLPDDAKSPQIDKFNMDDRPVMFIAVEST-GQTSRRDLSRFVDKVALERLQTVQGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+    DP +L     T  ++       +                    
Sbjct: 173 GGAENGGFQERQIRVWVDPDKLESRNLTALEVKNAIQSKHVELPAGRVE----------- 221

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    +G    G   N +  +   + ++    +            I      V + 
Sbjct: 222 ---------TGSQEYGIRLNGEYASVDELANLPIKNVNGAIIRLRDIARIEDGFEDVRNV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +             +   +              L A + P     V + N    L S  
Sbjct: 273 ALYNGEDSILIFIRKQRGANEVNLAAGVKKRLEELNAIAPPGVTLKVVQDNSVYILNSMH 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +        L  +++F+ +   +  +V   +I + ++ ++ +L  +G TL   S  G+
Sbjct: 333 GVRDDIVWGILLTSLIMFLFLRTFRATVVTVITIPVCLLGSIIVLWGMGLTLNNMSAMGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD+  +V E ++      ++   +   G     +++     T +   + +   
Sbjct: 393 SLAVGMVVDATTVVIENVQRHREMGKTAVRAALDGTGEVSASVIAGAATTIAVFLPVALM 452

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G        F  T+ ++I IS+  ++++   +   ++   K  +   N + +  +  + 
Sbjct: 453 PGMIGRFFSSFGTTVTVTIAISLLLSVTLTPFLCANLLGRMKKPARWQNWMEKPLICLER 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-----KGGIQLGVLANRPVDLS 592
              + ++A       ++  ++ +           G +F     +G   + +       + 
Sbjct: 513 GYSRVLKAAVRHRLATLAIAVGAFAGGIFIAGKLGSEFFPNEDQGRFNISIEMAADASIE 572

Query: 593 VVRSNLESLQIGDISF 608
              + ++ L       
Sbjct: 573 STLAFMKELSETVQQD 588



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 63/139 (45%), Gaps = 7/139 (5%)

Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           + G++ + + + + + ++F+ +   L  + +L L  +   GF  L G+  ++ ++  ++ 
Sbjct: 846 LTGIVFAVVLVYMVMAVQFESFLHPLTVMFSLPLMTSGAFGFLYLMGLRLSVMSLMGIIL 905

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           LIG  VN+ +++ D   +        +     +  +    L   + T+++  I  LP+A+
Sbjct: 906 LIGIVVNNAIMLVDFANQERA---KGLDKVTAMLNAGPLRLRAILMTTVSTMIGTLPIAL 962

Query: 789 ---WGGSVIGSFAIPMAFG 804
               GG V    +  +  G
Sbjct: 963 GLSLGGEVRQPMSAAVIGG 981



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 11/205 (5%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKW 690
            + LE +       V L  +Q+  +        +    + G++++++ M +++   R   
Sbjct: 301 KKRLEELNAIAPPGVTLKVVQDNSVYILNSMHGVRDDIVWGILLTSLIMFLFLRTFRATV 360

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              +     L+  I    G     G+  N  +   +   +G  V+   VV + +    + 
Sbjct: 361 VTVITIPVCLLGSIIVLWG----MGLTLNNMSAMGLSLAVGMVVDATTVVIENV---QRH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
                +          E     +  +       LP+A+  G +     SF   +   I +
Sbjct: 414 REMGKTAVRAALDGTGEVSASVIAGAATTIAVFLPVALMPGMIGRFFSSFGTTVTVTIAI 473

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +   S+ +   +   +     K AR
Sbjct: 474 SLLLSVTLTPFLCANLLGRMKKPAR 498


>gi|150008364|ref|YP_001303107.1| putative cation efflux pump [Parabacteroides distasonis ATCC 8503]
 gi|255015611|ref|ZP_05287737.1| putative cation efflux pump [Bacteroides sp. 2_1_7]
 gi|256839347|ref|ZP_05544856.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298375020|ref|ZP_06984977.1| multidrug efflux RND transporter MexF [Bacteroides sp. 3_1_19]
 gi|149936788|gb|ABR43485.1| putative cation efflux pump [Parabacteroides distasonis ATCC 8503]
 gi|256738277|gb|EEU51602.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|298267520|gb|EFI09176.1| multidrug efflux RND transporter MexF [Bacteroides sp. 3_1_19]
          Length = 1045

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/688 (11%), Positives = 186/688 (27%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + ++P   P               + +    
Sbjct: 8   RPIFATVLALIIVVAGLVT-----LNILPIAQYPEITPPT-------------VQVSAVY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +     V  
Sbjct: 50  PGADAQTVAQTVGLPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVMVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        + T  +    +++   +    I   +  S       IDQ+   
Sbjct: 110 RVSIAQSSLPEPVIVQGITTRKQSSNIVMMLTLSSKDSIYDGLYLSNYATLNMIDQLTRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP  +R    T   +       N        G   LR  +
Sbjct: 170 PGVGSVQVMGAGNYSMRIWLDPEAMRIRNLTPDMVYQAISTQNAQVSAGYVGQPILRADN 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  ++                +    +     G +         I    +  
Sbjct: 230 PYQYTLTVKGRLT-------------TPDEFGNIVLKTGQGGKILRLKDIARIELGSSSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L+               +     +        L +         V          
Sbjct: 277 NVVSKLSGQPTAAIAIYQLPGSNSLDVSKVVKAKMKELGSSLPEGVEYKVTLDTTEVIDA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  ++   +I +++I TLA+++ LG ++   ++
Sbjct: 337 SIHEVLITFLETTLLVVLVIFLFLQNFRAVVIPFITIPVSLIGTLAVMAALGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L I + VD  I+V E           +   ++          I    +  L   + 
Sbjct: 397 FGLILAIAVVVDDAIVVVENSTRLLDTGKYTAHEAVSKAMDEIVGPIVGVVLVLLAVFIP 456

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDIN 526
             F  G +    + FA+T+  + ++S F ++++  ++    +            K  +  
Sbjct: 457 TTFISGISGQLYKQFALTIAAATVLSGFNSLTLTPSLCALFLEKNTEEPKFFLFKGFNKV 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R     +   I+ ++  I  +         +  G   +     
Sbjct: 517 YGKTQKMYDSIVERMLKRPGAAMIVYGIITAVAVILFMRWPTTFIPEEDDGYFLVVSQLP 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L+   +  + +     ++       +         G+         ++K       
Sbjct: 577 PAASLNRTEAVTKQIDEILKTYPEVKSFISVSGFSVMGGGEQSNTATFFVILKNWNERKG 636

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T +       + +  +    + G++
Sbjct: 637 KEHTAEAVTNRFNREASAIQEAQVFGMV 664



 Score = 39.3 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 96/245 (39%), Gaps = 8/245 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          ++  +        +   Q    +S+  ++V++   K++   +P     
Sbjct: 265 DIARIELGSSSYNVVSKLSGQPTAAIAIYQLPGSNSLDVSKVVKAKMKELGSSLPEGVEY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
              +   ++    I + ++  + + + +++ I++  + +   +    T+ + +  TL   
Sbjct: 325 KVTLDTTEVIDASIHEVLITFLETTLLVVLVIFLFLQNFRAVVIPFITIPVSLIGTLAVM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDLIDKSINETLG 770
           A  G   N   +  ++  I   V+D +VV +    + +L  T   +  + + K+++E +G
Sbjct: 385 AALGFSINTLTLFGLILAIAVVVDDAIVVVEN---STRLLDTGKYTAHEAVSKAMDEIVG 441

Query: 771 RSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V   +      +P   + G  G +   FA+ +A   V++  +S+ +   +     +  
Sbjct: 442 PIVGVVLVLLAVFIPTTFISGISGQLYKQFALTIAAATVLSGFNSLTLTPSLCALFLEKN 501

Query: 828 AKNAR 832
            +  +
Sbjct: 502 TEEPK 506


>gi|254882517|ref|ZP_05255227.1| multidrug resistance protein [Bacteroides sp. 4_3_47FAA]
 gi|254835310|gb|EET15619.1| multidrug resistance protein [Bacteroides sp. 4_3_47FAA]
          Length = 1037

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 94/694 (13%), Positives = 210/694 (30%), Gaps = 48/694 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++           ++++P   P   I+                 
Sbjct: 9   RPVFSGVISVVIVLLGMISMF-----SLPVEQYPDIAPPT-IN--------VSATYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +E  + ++       +        I + F      +  A  V   + G
Sbjct: 55  AETVQKAVITPLEEAINGVEDMTYMTSTASNTGDASIDIYFKQGTNADMAAVNVQNRVNG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +  K  + T  ++   ++                +  +      ++       
Sbjct: 115 ALSQLPAEATKTGVTTEKQQNAELMTFALYSPDDRFDQTFLNNYVKINVEPRLKRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P ++ Q       +S      N       FG         N+Y
Sbjct: 175 KAQMFGS-NYSMRLWLRPDKMAQYGLIPDDISTVLARQNIEAATGSFGANHPT---ANEY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +SG               +    +     G          ++           
Sbjct: 231 TMKYRGRLSGAE-------------EFGELVIKSLPGGNVLRLKEVADVELGDEYYKYSS 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        + + KA  + + TI+    +   L          +V          S + 
Sbjct: 278 EVNGHPAAMMLINQKAGSNASSTIKEIHEVLDDLSRDLPEGTEFVVLTDTNKFLYASINS 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   K  L+   SIF+++I T A++S++G ++ L ++  +V
Sbjct: 338 VIRTLIEAILLVIVVVYVFLQDIKSTLIPTISIFVSIIGTFAVMSMIGFSVNLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++ +  +   S   + D       S I  S I  +     +   
Sbjct: 398 LAIGTVVDDAIVVVEAVQAKFDEGYQSAVLAADDAMKGVSSAILTSTIIFMAVFFPVAMM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------------IRYKKMKSIDI 525
           GG +      F ITM +++ IS   A ++  A+   +              +        
Sbjct: 458 GGTSGAFYTQFGITMAVAVGISAVNAFTLSPALCALLLKPYIDEQGNTKNNFAARFRKAF 517

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           N +           + F+  R W +   I  S   + LL        I  +    + V  
Sbjct: 518 NAVFDRLSRRYVRGVMFIIHRRWLLWSIIGISFGLLVLLVNVTKTGLIPEEDTGTVMVSM 577

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           N     S+ +++    +I        + E +  V      G   +Q      +K      
Sbjct: 578 NTKPGTSMAQTSKVMERINSRLDSIGEIEYSGAVAGFSFSGSGPSQAMYFVTLKDWEQRK 637

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
               ++ +        + ++    +  +    IA
Sbjct: 638 GEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIA 671



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ + I  T    ++ G   NL  + A++  IG  V+D +VV + ++   
Sbjct: 359 DIKSTLIPTISIFVSIIGTFAVMSMIGFSVNLLTLFALVLAIGTVVDDAIVVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                S       D ++       + +++       P+A+ GG+       F I MA  +
Sbjct: 419 DEGYQSAVL--AADDAMKGVSSAILTSTIIFMAVFFPVAMMGGTSGAFYTQFGITMAVAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A ++  ++  +   +  
Sbjct: 477 GISAVNAFTLSPALCALLLK 496



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/418 (9%), Positives = 117/418 (27%), Gaps = 21/418 (5%)

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +  +     ++  + +    S++    + Y+   D     + A       G G   GF +
Sbjct: 622  SQAMYFVTLKDWEQRKGEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIAGYGMGNGFEL 681

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +      ++          +  + +  ++  +  +  + +      I            
Sbjct: 682  YLQDKAGGNIAAFKEEADKFVEALSQRPEIGEVYSSFATDYPQYWVDIDAAKCEQSGVSP 741

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF-- 608
               +          +    N        + +   A   V+   +         G +S   
Sbjct: 742  ADVLSTLSGYYTGQYVSDFNR-FSKLYHVTMQAPAEYRVNAESLHHMYVRATDGGMSPLS 800

Query: 609  -----QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                    +G  +      +                + +  I   +          +   
Sbjct: 801  RFVRLTKTNGPSDLTRFNLFNAISISGSPAQGYSSGQVLEAIGETAREVLPSNYTYEFGG 860

Query: 664  ELIRKGIV---GVIISAIAM----LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                +        +I  + M    LI   +    +     + ++   +  +  F  LFG+
Sbjct: 861  ISREESKTTNNATLIFLLCMVLVYLILCALYESVFIPFAVLLSVTCGLMGSFLFAWLFGL 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            E N+     ++ +IG      +++ +      K  +  ++       +    L   + T 
Sbjct: 921  ENNIYMQTGLIMIIGLLAKTAILLTE---YAGKRRSEGMTLAQAAYSAAKVRLRPILMTV 977

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++    ++P+ +    G +   S A  +  G++V   + +F+   + +     + +  
Sbjct: 978  LSMVFGLVPLMMAHGVGANGSRSLATGVIGGMIVGTLALLFLVPSLFIVFQYIQERVK 1035


>gi|218248589|ref|YP_002373960.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Cyanothece sp. PCC 8801]
 gi|218169067|gb|ACK67804.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 8801]
          Length = 1041

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/643 (12%), Positives = 174/643 (27%), Gaps = 41/643 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   +I  +G++  L        + RFP   P                     
Sbjct: 6   KRPVFATVCALVILLVGIICLL-----TLPVARFPDISPTTIE---------VQATYSGA 51

Query: 62  EDDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + V   +    +   + ++    +   S     + I+  F  SR K+  A  +   + 
Sbjct: 52  SAEVVENAVTNILERQINGVEGLRYLTSSSSNNGTSTISAVFDASRNKDIAAVDIQNQVS 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L  + +++ +  T +    ++      D      +  S    R  +D +   +  
Sbjct: 112 IVESQLPQEVQQSGISVTKQSNNFLLGIALYSDDNRYDNVFLSNYADRYLVDNLKRIKGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D +RL     TT  +       N        G     +    Q
Sbjct: 172 SNIQIFGERRYAMRLWLDANRLASRGLTTQDVVDALSKQNRQVGAGKIGGEPAIEGQQYQ 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    +++                +    +   +                        
Sbjct: 232 LDLRAVSQLT-------------TPEEFNNLLLKTDENGAIIRLKDVGRAELGAQDYNTF 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +              +     P     +          S +
Sbjct: 279 LRYRGQDAIGMGVLQLTGSNALDVAHKVKEEIKKIALSFPPGLKYTIAFDTTQFVEESLA 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   LV++V+ + +   +  L+   +I   +  T A +   G ++   ++ G+
Sbjct: 339 EVVNTIIMSVVLVVLVILLFLQNWRTTLIPSLTIPFALFGTFAFVKFFGFSINTLTLFGL 398

Query: 421 VLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLF 478
            LG G+ VD  I+V E+I      +  S + +        +S  I  S +   +   V F
Sbjct: 399 SLGTGMVVDDAIIVVEQISRYIEDQGMSPYEATIQAMRELFSAVIATSLVLMAVFIPVAF 458

Query: 479 FFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINP 527
           F G      + FA+T+  SI IS F A+++  A+   I                  +   
Sbjct: 459 FPGTTGALYQQFALTIAFSITISTFLAVTLTPALCALILRKGQGFPGWVGVMFHRFNEFL 518

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +       R       +L  + +   L         + +G     + A  
Sbjct: 519 DWVRRQYRRSLLGLVQIKRLMVGVFILLLGLTAWLYLKVPTAFLPDEDQGYFLTIIKAPD 578

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
            V L      +  ++   +     DG              + A
Sbjct: 579 GVSLQYTNEVMRKVETAILEEPEIDGTFAIAGFSVTGSSANDA 621



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 56/142 (39%), Gaps = 5/142 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L    T+   +  T  F   FG   N   +  +    G  V+D ++V +++  +  
Sbjct: 362 WRTTLIPSLTIPFALFGTFAFVKFFGFSINTLTLFGLSLGTGMVVDDAIIVVEQI--SRY 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S  +   +++ E     + TS+      +P+A + G+       FA+ +AF I 
Sbjct: 420 IEDQGMSPYEATIQAMRELFSAVIATSLVLMAVFIPVAFFPGTTGALYQQFALTIAFSIT 479

Query: 807 VAASSSIFIAAPILLFIYDWRA 828
           ++   ++ +   +   I     
Sbjct: 480 ISTFLAVTLTPALCALILRKGQ 501



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 64/168 (38%), Gaps = 13/168 (7%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              +   +  I + + +  +++ +      +  + L I   L   +L G   ++     ++
Sbjct: 870  APIIFGLGLIFVFLVLAAQYENYIDPFIILLAVPLAILGALIAQSLRGFPNDIYCQIGLV 929

Query: 728  TLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             LIG +  + +++ +   ++R+        +       ++  E L   V T+ +  +  L
Sbjct: 930  MLIGLASKNSILIVEFANQLREE------GLPIVKAAVEAAQERLRPIVMTAFSTLLGTL 983

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            P+ +    G     S    +  G+ +A   S+F+   + + +     K
Sbjct: 984  PLMIATGAGSGSRQSLGTAVFGGMFIATFLSLFLVPILYIMVKIMTEK 1031


>gi|330996773|ref|ZP_08320645.1| RND transporter, HAE1 family [Paraprevotella xylaniphila YIT 11841]
 gi|329572495|gb|EGG54146.1| RND transporter, HAE1 family [Paraprevotella xylaniphila YIT 11841]
          Length = 1489

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/662 (10%), Positives = 180/662 (27%), Gaps = 49/662 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I  +G +      L    +D++P   P               + +    
Sbjct: 9   RPVFSMVISILIVIVGFI-----GLTLLPIDQYPQITPPV-------------VKISASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                  +       +   L    G+         +     T++F  S   +  A ++  
Sbjct: 51  PGASALTVSQAVATPIEQELNGTPGMLYMESSSSNSGGFSATVTFDISADPDLAAVEIQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   S+L  +  +N +    +    ++      D      I  S       +D +   
Sbjct: 111 RVKLAESRLPAEVIQNGISVEKQAPSQLMTLCLTSDDPKFDEIYLSNFATINVLDVLRRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P +L     T   +       N      + G + +   D
Sbjct: 171 PGVGRVSNIGSRYYAMQIWVQPDKLANFGLTVQDVQNALKDQNRESAAGVLGQQPIEGLD 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               +       +                +    +   +             I       
Sbjct: 231 ITIPISTKGRLST--------------VSQFEEIVLRADADGSLIRLRDVARISLEAQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +     E        +           +          
Sbjct: 277 NTESGINGGNAAVLGIYMLPGANAMEVAENVKKAMDEISKSFPEGLEYEIPFDMTTYISE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+ V+F+ +   +  L+   ++ +++I T   + + G +L + ++
Sbjct: 337 SIHEVYKTLFEALVLVIFVVFLSLQSWRATLIPVVAVPISLIGTFGFMLIFGFSLNMLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR-AYSTIFDSNITALIATV 475
            G++L IG+ VD  I+V E +     +     + +     +  A + I  S + A +   
Sbjct: 397 LGLILAIGIVVDDAIVVVENVERIMEEEHLGAYEATKKAMTGLAGALIATSLVLAAVFVP 456

Query: 476 VLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDI 525
           V F  G  G   R F +T+ +S+LIS   A+++   M   I         +    + I+ 
Sbjct: 457 VSFLPGITGQLYRQFTVTIVVSVLISTVVALTLSPVMCSLILKPADPNKPKNIVFRKINE 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       I    +  +   +   ++  +  +           ++ +G  ++ +  
Sbjct: 517 WLSVGNHKYIQGIQKVLIHPKRIILSFCLVIGLTFVLHRMVPTSFLPVEDQGYFKVELEL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                L   R+  E      +     +  +N                  + +   +  + 
Sbjct: 577 PEGATLERTRNVTERAIRYLMENPAVEYVQNVTGSSPRVGTSQARSELTVILKPWEERDK 636

Query: 646 VP 647
             
Sbjct: 637 TT 638



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/421 (9%), Positives = 139/421 (33%), Gaps = 23/421 (5%)

Query: 430  SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
            ++   +E         +    ++D   +   +   +     +  +      G G+  GF 
Sbjct: 617  TSQARSELTVILKPWEERDKTTIDEVMAEVKTHFKEYPECKVYLSTPPVIPGLGSSGGFE 676

Query: 490  ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
            + +      +    +     ++ +  + K++  +  +  +    +   +    ++     
Sbjct: 677  MQLEARGDATFENLVQATDTLLYYAAQRKELSGLSSSLQAEIPQLYFDVDRDKVKLSGVP 736

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
            +             ++ +  N   +    + +   A+       +           +   
Sbjct: 737  MADVFSTMKAYTGSVYVNDFNM-FNRIYRVYIQAEADYREHPENINLFFVRGSNNAMIPL 795

Query: 610  NFDGEKNFLV--------------RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               G  ++                 ++    D  +  + +E++++   E +P +      
Sbjct: 796  TSLGTTSYTTGPGSIKRFNMFNSAIIRGDAADGYSSGQAMEVIEQVAREHLPDNIGVEWS 855

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
             +  +  +   + G+V +++  I + +++   ++ W   +  + +L +          L 
Sbjct: 856  GLSYQEKQAGGQTGLV-LMLVFIFVFLFLAALYESWMVPIAVLLSLPVAALGAYLGITLC 914

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+E ++     ++ L+G +  + +++ +  +  +               +        + 
Sbjct: 915  GLENDIYFQIGLVMLVGLAAKNAILIVEFAKDEV---DRGGDLVASTLHAARLRFRPILM 971

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS+A  + +LPM V    G +   +    + FG++VA S  I +     + IY  + K  
Sbjct: 972  TSLAFILGMLPMVVASGPGSASRQAIGTGVFFGMIVAVSVGILLVPFFFVLIYKAKGKFN 1031

Query: 832  R 832
            R
Sbjct: 1032 R 1032



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 91/286 (31%), Gaps = 16/286 (5%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  +               ++ + A+    L  +R                     
Sbjct: 226 IEGLDITIPISTKGRLSTVSQFEEIVLRADADGSLIRLRDVARISLEAQSYNTESGINGG 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGV 673
               L            V E VKK + EI           +   ++  +          +
Sbjct: 286 NAAVLGIYMLPGANAMEVAENVKKAMDEISKSFPEGLEYEIPFDMTTYISESIHEVYKTL 345

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + + ++  +++    W   L  +  + + +  T GF  +FG   N+  +  ++  IG 
Sbjct: 346 FEALVLVIFVVFLSLQSWRATLIPVVAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGI 405

Query: 733 SVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            V+D +VV    +R+ +   L        +   K++    G  + TS+      +P++  
Sbjct: 406 VVDDAIVVVENVERIMEEEHLGA-----YEATKKAMTGLAGALIATSLVLAAVFVPVSFL 460

Query: 790 G---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G +   F + +   ++++   ++   +P++  +    A   +
Sbjct: 461 PGITGQLYRQFTVTIVVSVLISTVVAL-TLSPVMCSLILKPADPNK 505


>gi|298290517|ref|YP_003692456.1| acriflavin resistance protein [Starkeya novella DSM 506]
 gi|296927028|gb|ADH87837.1| acriflavin resistance protein [Starkeya novella DSM 506]
          Length = 1024

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 63/523 (12%), Positives = 143/523 (27%), Gaps = 39/523 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++  IG++        +  +  +P+                        
Sbjct: 9   RRPVFATVLSLLMVLIGIVS-----FSRLTVREYPNIDEPVV---------SVVTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +   + ++   +   + R   ++IT+ F      +  A  V   +  
Sbjct: 55  SASIVESQVTQVLEGSIAGIEGIDVLESTSRSESSRITVRFRLEIDPDVAASDVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  +  + ++         ++      D      +E S  I R  +D+        
Sbjct: 115 VRQRLPDEIDEPVISKVEADAQPVMFVVFRSD--RMTPLELSDYIDRYIVDRFKNITGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  RL     T   +       N                     
Sbjct: 173 DVQIYGERRYAMRIWIDRERLAAYNLTVQDVEDALSAQNVEIPSGRIESV---------- 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            +       +   +I        +        +    A      
Sbjct: 223 ----------DREFTVLSRTALANVEQFNNIVVKRADGAQVHMSDVARVELGAADERRAS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +          +   +           +   N      S   
Sbjct: 273 RFNGGAAIIVGLIKQAVANPLDVSAGVREVLPAVNESLPEGMSGAIGNDNAVFIDRSIKS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   +I +++I T  ++  LG ++   ++   V
Sbjct: 333 VFHTIFEAVLLVVLVIVVFLRSIRASIIPIVTIPISLITTFGIMYALGFSVNTLTLLAFV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I            +   G       +    +T       + F  
Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEHGMKPIPAAIKGAREIGFAVIAMTMTLAAVYAPVAFAP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           G   R    FA+T+  ++++S F A+S+   M   +++++   
Sbjct: 453 GRTGRLFLEFALTLAGAVIVSGFVALSLTPMMCSRLLKHEDKP 495



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 52/149 (34%), Gaps = 6/149 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                ++  I T+ + +  T G     G   N   + A +  IG  V+D +VV + +   
Sbjct: 353 RSIRASIIPIVTIPISLITTFGIMYALGFSVNTLTLLAFVLAIGLVVDDAIVVLENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
            +     +       K   E     +  +M       P+A   G        FA+ +A  
Sbjct: 410 FRHIEHGMKPIPAAIKGAREIGFAVIAMTMTLAAVYAPVAFAPGRTGRLFLEFALTLAGA 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++V+   ++ +   +   +     K  R+
Sbjct: 470 VIVSGFVALSLTPMMCSRLLKHEDKPGRV 498



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 63/163 (38%), Gaps = 7/163 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            +  ++  +++   + + +  +F+ +   +  + T+ L +T  L      G   N+ +   
Sbjct: 846  QSLVLVFLLALGFIYLVLSAQFESFRDPVIIMLTVPLSMTGALAALYFSGGSLNVYSQIG 905

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++TL+G      +++ +      +   + +  R  + ++    L   + T+ A  +  +P
Sbjct: 906  LVTLVGLITKHGILIVEFAN---QQQESGLDRRAAVIEAAVLRLRPILMTTGAMVLGAVP 962

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +A     G          +  G+ +    ++F+   +   I  
Sbjct: 963  LAFAAGAGAESRAQIGWVIVGGMSLGTLLTLFVVPTVYSLIGR 1005


>gi|310821660|ref|YP_003954018.1| acriflavin resistance family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394732|gb|ADO72191.1| Acriflavin resistance family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1028

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 68/598 (11%), Positives = 163/598 (27%), Gaps = 44/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L +     GL+ A      +  + +FP       I+          +  E  
Sbjct: 9   RKPVLAWMLMAATIVFGLVAA-----QRIGISQFPDVDFPT-IN--------VSVTWEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   L    +E    ++       + RQ    IT+    SR  +     V   +  
Sbjct: 55  SPEAVESDLIEPLEEAVMQVEGVKSITSTARQGSASITVELDLSRNVDLALQDVQTKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              ++  D    +   T  ++  I+              + +     +  +++       
Sbjct: 115 AQRRMPEDVDPPVTSKTNPEDQPIMWLGVAGPFSQQVVSDYARY---RVREKLQTVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    D  ++     T   +       +               +     
Sbjct: 172 EVTLGGSLERNVRIWVDAQKMDAQGLTVTDVINALQREHVELPAGRIETEGREVNVRVMG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D   +                      I   +      +      +           
Sbjct: 232 EALDLTAL--------------------RSIVLRQQEGATVYLSDVALVEDGFEDTRRLS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +     +    +   LR  +       V   +      S   
Sbjct: 272 RANGNPAQGLGIRKQRGANAVAVAQGVHQVLEELRKDAPEGMEIGVNFDSTRFIEESVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   L  +V +M +      L    +I ++++ T+A++  LG TL   ++ G+ 
Sbjct: 332 IEFELMLACILTALVCWMFLGSLSSTLNVILAIPMSLLGTVAVIYFLGFTLNTFTLLGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+V E I       +    +   G S        + +  +   + + F  
Sbjct: 392 LAVGIVVDDAIMVLENIYRHAEMGKERTRAAREGTSEITFAALAATLAVVAIFIPVVFMK 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP--- 535
           G   R    F +T+ +++L+S   AI++  A    +++  +     +        +    
Sbjct: 452 GIIGRFFLQFGVTLCVAVLLSYVEAITLAPARCAQLLKTSREHRGRVGQWVDRVFVKLEG 511

Query: 536 -DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +       W V    +  +     +F    +  +  +   +L V     V  +
Sbjct: 512 LYARVLDKALTHPWWVLAGAVVLLSVSAFVFQALPSEFVPSQDQSRLTVRLQTAVGSN 569



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 64/167 (38%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I  + +      + +  +F  +   +  +T L L +        + G+  N+ ++  +L 
Sbjct: 850  IFALFLGIGVAYMVLASQFNSFLHPVTVLTILPLSVAGAAFALGIAGMTLNIFSMIGLLL 909

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G    + +++ D     ++         + + ++    L   + TS+A  ++ +P A+
Sbjct: 910  LMGIVKKNSIILMD---YALQQREEGADALEAMRRAGPVRLRPILMTSLATMMAAIPAAL 966

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G       +I +  G+ V+   S+ +     +     + +  R
Sbjct: 967  ALGAGSETRAPMSIAVLGGLSVSTVLSLLVVPAFYVVADRLKDRVGR 1013



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/284 (11%), Positives = 86/284 (30%), Gaps = 10/284 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK- 615
                  +    +   +D      + +       + +    L      D    +      
Sbjct: 218 IETEGREVNVRVMGEALDLTALRSIVLRQQEGATVYLSDVALVEDGFEDTRRLSRANGNP 277

Query: 616 -NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              L   + +  ++VA  + +  V +++ +  P            +   E + +    ++
Sbjct: 278 AQGLGIRKQRGANAVAVAQGVHQVLEELRKDAPEGMEIGVNFDSTRFIEESVHEIEFELM 337

Query: 675 ISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           ++ I   +  W         L  I  + + +  T+      G   N   +  +   +G  
Sbjct: 338 LACILTALVCWMFLGSLSSTLNVILAIPMSLLGTVAVIYFLGFTLNTFTLLGLALAVGIV 397

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET---LGRSVYTSMAAFISVLPMAVWG 790
           V+D ++V + +    +             +  +E       +    +A FI V+ M    
Sbjct: 398 VDDAIMVLENI---YRHAEMGKERTRAAREGTSEITFAALAATLAVVAIFIPVVFMKGII 454

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAP-ILLFIYDWRAKNARI 833
           G     F + +   ++++   +I +A       +   R    R+
Sbjct: 455 GRFFLQFGVTLCVAVLLSYVEAITLAPARCAQLLKTSREHRGRV 498


>gi|241662523|ref|YP_002980883.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Ralstonia
           pickettii 12D]
 gi|240864550|gb|ACS62211.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ralstonia pickettii 12D]
          Length = 1051

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/690 (11%), Positives = 188/690 (27%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L      LP+  + ++P+  P              ++ +  + 
Sbjct: 8   RPVFAWVIALAIILAGVLA-----LPKLPVAQYPNIAPP-------------NVSISANY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          I LSF      +  A +V  
Sbjct: 50  PGASARTVESAVTAIIEREMNGAPGLLYMSSSSDAAGNVSINLSFTQGTSPDLAAVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L    ++N +      E  ++    + ++     I+         I Q+   
Sbjct: 110 RLKIVEERLPEVVRRNGIRIEKAAENYMMYLSLSAERGRFDGIDLGDLASSDLIPQLRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D  +L     T   +S      N        G   +  S 
Sbjct: 170 PGVGTAQLFDA-EYAMRIWPDADKLTASGLTAGDLSDAVRRYNARITVGEIGSGAVPGSA 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     ++                         +   R         +    +  
Sbjct: 229 PINASVTGDDGLT-------------TPEAFGQIPLRADAQGRVVLLRDVARVELGGSDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    +                +     +    +    +A   P     V   +      
Sbjct: 276 LYLSRMNGKPATTIGIKLAPGANAVGVAKRVRAVLDQAQAQFPPGVRYEVAYDSSRFVGI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +V+ + +   +  L+    + + ++ T A++  +G ++ + ++
Sbjct: 336 AIEQVVKTLLEAVVLVFLVMMLFMQNLRATLIPTLVVPIALLGTFAVMLPMGFSINVLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    + +  S   +      +    I   ++      V 
Sbjct: 396 FGLVLAIGILVDDAIVVVENVERVMHEEGLSPREATAKAMRQISGAIVGISLVLTAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F++++ +S++ S F A+++  A+   +           R     + 
Sbjct: 456 MAFFGGAVGNIYRQFSLSLAVSMVFSAFLALTLTPALCATLLKPVQADHGAERKGFFGAF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A+   R     V    +  +  +  +         +  G     V
Sbjct: 516 NRGFARLTARYRGGVAMLLNRTGRALVAYGAVIGVVVLLFMQLPTAFLPEEDTGEFMTVV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +       +     +          Q         +      G+      +   +K    
Sbjct: 576 MLPTGATQAQTLDVVRQA-EQYFMTQEPAVASTLAITGFSLYGNGQNAAMLFLTLKDWKQ 634

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                  +            ++    ++ +
Sbjct: 635 RKGAGQHVDAVVERANAAFGKIKGAMVMAM 664



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 88/238 (36%), Gaps = 7/238 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L       +S  N        ++L           RV  ++ +   +  P    
Sbjct: 264 DVARVELGGSDYLYLSRMNGKPATTIGIKLAPGANAVGVAKRVRAVLDQAQAQFPPGVRY 323

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
           +        +   +  + +  ++ + + + + + +  +     L     + + +  T   
Sbjct: 324 EVAYDSSRFVGIAI-EQVVKTLLEAVVLVFLVMMLFMQNLRATLIPTLVVPIALLGTFAV 382

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   N+  +  ++  IG  V+D +VV + +     ++   +S R+   K++ +  G
Sbjct: 383 MLPMGFSINVLTLFGLVLAIGILVDDAIVVVENV--ERVMHEEGLSPREATAKAMRQISG 440

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             V  S+      +PMA +GG+V      F++ +A  +V +A  ++ +   +   +  
Sbjct: 441 AIVGISLVLTAVFVPMAFFGGAVGNIYRQFSLSLAVSMVFSAFLALTLTPALCATLLK 498


>gi|322435721|ref|YP_004217933.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX9]
 gi|321163448|gb|ADW69153.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX9]
          Length = 1055

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/566 (12%), Positives = 160/566 (28%), Gaps = 22/566 (3%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   +I   G +      LP   +  +P   P   I                 
Sbjct: 7   RRPIFATVCALLIVLAGAVS-----LPTLPISLYPELAPPQVI---------VACNYVGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               V   + +  +E  + ++       +      + IT++F      +  A  V   + 
Sbjct: 53  NSSTVESAVTVPLEEAINGVEGMRYISSTSSNDGTSTITITFQTGYSLDIAAVDVQNRVA 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L        +  T      ++ +              S  +     D +      
Sbjct: 113 TAQGRLPAVVNNTGISITKANSNFVLAAGFVSPDHSLSPAFISNYLDVYVSDALKRVPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +        +    DP++L     T   ++      N        G+         Q
Sbjct: 173 GAVVIFGERKYAMRIWLDPTKLAARGLTPLDVNNALGEQNIEVAAGQLGIPPSDPKQAYQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V     +S                        + +G                      
Sbjct: 233 MAVRVVGRLSDPRQFENIIIKSNAASGAGAT---NPVGTGIVLLKDVGRAELGAETYNTN 289

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              +            +  +     +    + A L     P    I+          S  
Sbjct: 290 LRFSGNDAVGLGIQQLSNANALDVDKRCRQVLADLEKSYPPGLKGIIAVDTTTVVSDSIK 349

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T A    +V++V+F+ +   +  ++   +I +++I T A + + G ++   ++ GI
Sbjct: 350 EVESTLAEAIIIVIVVIFLFLQDWRATIIPAVTIPVSLIGTFAFIKIFGFSINSLTLFGI 409

Query: 421 VLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            L  GL VD  I+V E ++    +  Q    +  +      S +  +++  +   V + F
Sbjct: 410 TLATGLVVDDAIVVIENVQRHLEEGVQDPMEATSIAMREVTSAVIATSLVLISVFVPVSF 469

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           F G      + F++T+  SI IS F A+++  A+   ++R ++ K+              
Sbjct: 470 FPGTTGILYKQFSLTIAFSIAISAFNALTLSPALSAILLRKEQHKTGIQGFFLNPIDKAI 529

Query: 537 CIAIQFMRARFWGVGISILFSICSIC 562
              I +               +    
Sbjct: 530 KKLISWYAVAVTFAVKIRYAVLIVFF 555



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 60/147 (40%), Gaps = 5/147 (3%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   +    T+ + +  T  F  +FG   N   +  +    G  V+D +VV + +
Sbjct: 368 LFLQDWRATIIPAVTIPVSLIGTFAFIKIFGFSINSLTLFGITLATGLVVDDAIVVIENV 427

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
           +++++         +    ++ E     + TS+      +P++ + G+       F++ +
Sbjct: 428 QRHLEEGV--QDPMEATSIAMREVTSAVIATSLVLISVFVPVSFFPGTTGILYKQFSLTI 485

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRA 828
           AF I ++A +++ ++  +   +     
Sbjct: 486 AFSIAISAFNALTLSPALSAILLRKEQ 512



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 82/284 (28%), Gaps = 9/284 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S   +                         +        S     L++L   + + 
Sbjct: 762  TYMGSSYINDFDFNNRSYRVYVQADQQFRRNVQDLRQYYVRSNSNQMIPLDNLVAINETS 821

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                     L R     G         +     +           T         E+   
Sbjct: 822  GPQVINHYNLFRSAEIDGSPAPGLSSGQGNDNMVKLFEKNKLQGMTYSWTGLALEEVESS 881

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G   VI     +++Y+ +      +      +  +   I   LG  +L GI  ++     
Sbjct: 882  GKAIVIFGLGLLVVYLTLSAQYESFTLPFIILLAVPTAILGALGLVSLRGISDDVYVQIG 941

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG S  + +++ +   + + L     S  D    +    L   + TS A  + VLP
Sbjct: 942  MVMLIGLSAKNSILIVEFAEQQLGL---GKSIIDAAITASELRLRPILMTSSAFILGVLP 998

Query: 786  MAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +    G+      S    +  G+V++   ++F    + + +  +
Sbjct: 999  LYFATGAGAYGRHSVGTAIVGGMVLSTVLNLFFIPVLYVILKTF 1042


>gi|194334207|ref|YP_002016067.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Prosthecochloris aestuarii DSM 271]
 gi|194312025|gb|ACF46420.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Prosthecochloris aestuarii DSM 271]
          Length = 1055

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/527 (12%), Positives = 147/527 (27%), Gaps = 44/527 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++      +GL+      + Q  L +FP   P               + +    
Sbjct: 8   RPVLATVISVFFVLLGLI-----GISQLPLTQFPDIAPP-------------SVSVSTSY 49

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +        +E  + ++       +     +  I++ F      +  A  V  
Sbjct: 50  PGASAETIARSVAPSLEEAINGVEDMTYMTSTSSNDGSLNISVFFKLGTDPDQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV-ISHAIEQSMEIIRQRIDQIGI 176
            +    S+L  + +   + T+ ++   I+L     D      A           I +I  
Sbjct: 110 RVSRATSQLPEEVRNIGVTTSKKQNSMIMLITLYSDDPDTYDATFLQNYAKINLIPEIQR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q          +    +P+R+     T  ++       N       FG       
Sbjct: 170 VNGVGQASVFGSKDYSMRIWLEPARMAAYRITPQEVISAVQNQNLEAAPGRFGEGSR--- 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                          + L         +       +                 +      
Sbjct: 227 -------------EALELIIRYKGKMKEPSDYEGIVLRVNADGSLLRLRDIARVELGSYS 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                               A  + N        +              ++      +  
Sbjct: 274 YAVQADANGKESVTMAIYQSAGSNSNDIQIGLQAVLEKASVSFPHGIGYMIPYSTKRSLD 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F+ +   +  L+   ++ + +I T   ++L G ++ L +
Sbjct: 334 KSIDQVLHTLFEAFLLVFLVVFIFLQDFRSTLIPALAVPVAIIGTFFFMTLFGFSINLLT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCS---LDMGFSRAYSTIFDSNITALI 472
           +  ++L IG+ VD  I++ E +  +   N+     +   +    + A  +I     +  +
Sbjct: 394 LFALILAIGIVVDDAIVIVEAVHAKMEHNRLPARKATHLVMSEITGAIISITLVMASVFL 453

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
               L    G   R FA T+ ++ILIS   A+++  A+    +  + 
Sbjct: 454 PVGFLEGSTGVFYRQFAFTLAIAILISAVNALTLSPALCALFLTNEH 500



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 88/267 (32%), Gaps = 9/267 (3%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L         +      + +  N    L  +R                D      V +  
Sbjct: 231 LIIRYKGKMKEPSDYEGIVLRVNADGSLLRLRDIARVELGSYSYAVQADANGKESVTMAI 290

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAM 680
                     +   ++  + +           ++     R L   I + +  +  + + +
Sbjct: 291 YQSAGSNSNDIQIGLQAVLEKASVSFPHGIGYMIPYSTKRSLDKSIDQVLHTLFEAFLLV 350

Query: 681 LIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + ++I    +   L     + + I  T  F  LFG   NL  + A++  IG  V+D +V
Sbjct: 351 FLVVFIFLQDFRSTLIPALAVPVAIIGTFFFMTLFGFSINLLTLFALILAIGIVVDDAIV 410

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           + + +    K+    +  R      ++E  G  +  ++      LP+    GS       
Sbjct: 411 IVEAVH--AKMEHNRLPARKATHLVMSEITGAIISITLVMASVFLPVGFLEGSTGVFYRQ 468

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFI 823
           FA  +A  I+++A +++ ++  +    
Sbjct: 469 FAFTLAIAILISAVNALTLSPALCALF 495



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 77/287 (26%), Gaps = 9/287 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  S  +    +   +             +      + S     + S+      +
Sbjct: 756  AFYGSLQVSDFNRFGKYYRVVMQARAEDRTEPSSLEGVFVKNASGEMVPMNSMVKLKRVY 815

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                 +   L                 + +K      +       +         E+   
Sbjct: 816  GPQTVDHFNLFNALTVNASVAPGYTTGQAIKAAEEVALSTLPAGFSYDWKGVSREEIESG 875

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G    I     + +Y+ +      +   L  I ++   I          GIE N+    A
Sbjct: 876  GQSVYIFILSLIFVYLLLSAQYESYILPLAVIFSIPTGIVGIFAGIRALGIENNIYVQVA 935

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG    + +++ +     ++     +   D   +         + TS+A  + +LP
Sbjct: 936  MIMLIGLLAKNAILIVE---YAIQRRRAGMPLLDSAIEGSRMRFRPILMTSLAFVVGLLP 992

Query: 786  MAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +    G       S       G++      + I   + +     + K
Sbjct: 993  LLWASGPSALGNHSIGAAAVGGMLSGVFLGVLIIPVLYMVFQGLQEK 1039


>gi|169656579|ref|YP_001428332.2| preprotein translocase subunit SecD [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290952963|ref|ZP_06557584.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313835|ref|ZP_06804407.1| preprotein translocase subunit SecD [Francisella tularensis subsp.
           holarctica URFT1]
 gi|164551647|gb|ABU61376.2| protein-export membrane protein SecD [Francisella tularensis subsp.
           holarctica FTNF002-00]
          Length = 645

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 162/548 (29%), Positives = 282/548 (51%), Gaps = 55/548 (10%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           I  + +L   PN+L          A+  N ++LGLDLRGG +L+LE +    ++  L   
Sbjct: 108 IIAMSMLSNSPNWLS---------ALGANPMNLGLDLRGGMYLMLEANTKTSIDAQLDNS 158

Query: 74  SDELRSFLKKEGIGVFSMRQ--------------IQNKITLSFADSRFKENIADKVTLFL 119
              + S  K   I + S+ +                  ++++ A+S   + +   ++   
Sbjct: 159 LSIILSAAKDNSINISSLTKAEEKSTIKAPQNYFDNGFVSITLANSVDVDKLKQYLST-- 216

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                        N++ T     + I  +   I Q+   AI Q + ++R RI+ +G++E 
Sbjct: 217 -----DFIKTQDPNIIYTNKGNTVFISYNSAKILQLKQDAISQVVTVMRNRINALGVAEV 271

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-NSKKGFMFGVRFLRDSDG 238
           ++ + G +R++I++PG QD ++ +Q+LG T+  SF+ V P  +       G +     +G
Sbjct: 272 SVAQAGDNRVVIEIPGLQDATQAKQILGGTSTASFYLVNPVADRLAAEEQGYKVYSLDNG 331

Query: 239 N----QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                 Y ++      G  + GA+ + D +T  P+V +  D   A  F ++T  NIG P+
Sbjct: 332 RGYQSYYSLKGTAVAGGADIIGASPSIDRQTGAPIVMVELDRSAASHFRQITGKNIGNPM 391

Query: 295 AVVLDGRVLTA-------------------PVINQAIPSGKAQISGNFTIETAGILAAML 335
            V+L                           V       G          + A  LA M+
Sbjct: 392 GVMLVNTTYEKVKDKDGKEKNVVSKTEKLINVATIQSALGSQFQITGLNQKEANNLALMI 451

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           ++G+L + ++IV+E+ +G  LG D+I KG  +IV  L+ +V+F++V Y  +G++A+ ++ 
Sbjct: 452 KSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVIALIAVVVFILVYYRVFGIIANIALV 511

Query: 396 LNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           +N+IL +A++S++  ATLTLP IAGIVL +G+++D N+L+ ERIREE R       ++ +
Sbjct: 512 MNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSIDGNVLIFERIREEIRAGMPRQSAIHI 571

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G+ +A++TI DSNIT LI  V+LFF G GAV+GFAIT+ + I+ SMFT++++ RAM  F+
Sbjct: 572 GYEKAFTTIVDSNITTLIVAVILFFIGSGAVKGFAITLMIGIVTSMFTSVTVSRAMTNFV 631

Query: 515 IRYKKMKS 522
              +K   
Sbjct: 632 YGKRKKLE 639



 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 102/219 (46%), Gaps = 5/219 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q+Q      +      +  K   +     I   + +GP + ++ I KG++ ++I
Sbjct: 427 QSALGSQFQITGLNQKEANNLALMIKSGALQVPVHIVQEQQIGPSLGKDNIGKGMLSIVI 486

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
           + IA++++I + ++  F + A   L++++   +   ++  G    L  +A ++  +G S+
Sbjct: 487 ALIAVVVFILVYYRV-FGIIANIALVMNLILIVAVMSIIPGATLTLPGIAGIVLNLGMSI 545

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  V++++R+R+ ++     +  +  I     +     V +++   I  + +   G   +
Sbjct: 546 DGNVLIFERIREEIRA---GMPRQSAIHIGYEKAFTTIVDSNITTLIVAVILFFIGSGAV 602

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI +  GIV +  +S+ ++  +  F+Y  R K  +I
Sbjct: 603 KGFAITLMIGIVTSMFTSVTVSRAMTNFVYGKRKKLEKI 641



 Score = 43.1 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 36/121 (29%), Gaps = 29/121 (23%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L  +I  + +  ALPN   +S                           L++ 
Sbjct: 11  QFPLWKNLLIVIILALAIFYALPNVFGKSPA-------------------------LQIS 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGV--FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           + D            + + L K+ I      +   ++ I ++F D   +      +   L
Sbjct: 46  QKD--GDVTTQLLVSVENTLAKDKISYQKADIADDKSNIAITFKDVEEQLKAKKVLKDSL 103

Query: 120 Q 120
            
Sbjct: 104 S 104


>gi|152988263|ref|YP_001348104.1| RND multidrug efflux transporter MexF [Pseudomonas aeruginosa PA7]
 gi|150963421|gb|ABR85446.1| RND multidrug efflux transporter MexF [Pseudomonas aeruginosa PA7]
          Length = 1062

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/608 (11%), Positives = 160/608 (26%), Gaps = 31/608 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G +        Q  +  +P  +P   +                 
Sbjct: 9   QRPIFAAVLSLLILIGGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +N   +V   + 
Sbjct: 55  NPKVIGETVASPLEQAITGVENMLYMSSQSTSDGKLTLTITFALGTDLDNAQVQVQNRVT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               KL  +  +  +          ++            +  S   +    D++   +  
Sbjct: 115 RTEPKLPEEVTRLGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAVLNVKDELARLDGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++     T   +       N        G      +   Q
Sbjct: 175 GDVQLFGLGDYSLRVWLDPNKVASRNLTATDVVNAIREQNRQVAAGTLGAPPAPSATSFQ 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +    I                 +    +     
Sbjct: 235 LSINTQGRLVNEE-------------EFENIIIRTGANGEITRLRDIARVELGSSQYALR 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L            +   +            A L+          +         GS  
Sbjct: 282 SLLNNKPAVAIPIFQRPGSNAIEISNLVREKMAELKQSFPQGMDYSIVYDPTIFVRGSIE 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ +++I T A++ +LG +L   S+ G+
Sbjct: 342 AVVHTLFEALVLVVLVVILFLQTWRASIIPLAAVPVSLIGTFAVMHMLGFSLNALSLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +            +           I  + +      +   F 
Sbjct: 402 VLAIGIVVDDAIVVVENVERNIGLGLKPVEATKRAMREVTGPIIATALVLCAVFIPTAFI 461

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R FA+T+ +S +IS F ++++  A+   +++         +      L    
Sbjct: 462 SGLTGQFYRQFALTIAISTVISAFNSLTLSPALAAVLLKGHHEPKDRFSVFLDKLLGGWL 521

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                        G     +           +  G+               V     +  
Sbjct: 522 FRPFNRFFDRASHGYVGTVNRVLRGSSIALLVYGGLMVLTYFGFSSTPTGFVPQQDKQYL 581

Query: 598 LESLQIGD 605
           +   Q+ D
Sbjct: 582 VAFAQLPD 589



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 69/237 (29%), Gaps = 9/237 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      D            L         S      +E + K+               
Sbjct: 816  KVSDTSGPDRVMHYNGFITAELNGAPAAGYSSGQAQAAIEKLLKEELPNGMTYEWTELTY 875

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                     +    V  +   +A L+       W   L  I  + + +   +    L G 
Sbjct: 876  QQILAGNTAL---FVFPLCVLLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVILAGS 932

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + N+     ++ L+G +  + +++ +  +         +     + ++    L   + TS
Sbjct: 933  DNNIFTQIGLIVLVGLACKNAILIVEFAKD---KQEEGMDRVAAVLEACRLRLRPILMTS 989

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +A  + V+P+ +    G  +  +  + +  G++      + +     + I  +    
Sbjct: 990  IAFIMGVVPLVISTGAGAEMRHAMGVAVFSGMIGVTFFGLLLTPVFYVLIRRFVENR 1046



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 60/148 (40%), Gaps = 9/148 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     + G   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLAAVPVSLIGTFAVMHMLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIG 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
           L        +   +++ E  G  + T++      +P A      G     FA+ +A   V
Sbjct: 425 LGLK---PVEATKRAMREVTGPIIATALVLCAVFIPTAFISGLTGQFYRQFALTIAISTV 481

Query: 807 VAASSSIFIAAPILL--FIYDWRAKNAR 832
           ++A +S+   +P L    +        R
Sbjct: 482 ISAFNSL-TLSPALAAVLLKGHHEPKDR 508


>gi|88802064|ref|ZP_01117592.1| HAE1 efflux family protein [Polaribacter irgensii 23-P]
 gi|88782722|gb|EAR13899.1| HAE1 efflux family protein [Polaribacter irgensii 23-P]
          Length = 1083

 Score =  175 bits (443), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/575 (12%), Positives = 161/575 (28%), Gaps = 40/575 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  IG L        Q  + +FP   P             + + + + 
Sbjct: 7   KRPVLAIVISVIILFIGGLAI-----KQLPISQFPQIAP-------------TTVNIFIA 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKVT 116
                    +      L + +     +   +       +  I + F           +V 
Sbjct: 49  YPGSSAEVLVNSTLIPLETAINGVQDMRYIASDATSAGEATIRVIFEPGTDPNEAVVRVK 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V   L    ++  ++ T  +   ++    +     +             I +I  
Sbjct: 109 TRVDQVLPLLPELVQREGVIITPVQPSMLMYVNLSSTDKNNDEKFLYNYAYTIVIPEIQR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P R+R    +  ++       +   +    G      S
Sbjct: 169 IKGIASAQILGSRKYAMRVWLKPDRMRAYNISAEEVLKAMEAQSILARPGRLGRSSGMTS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y++                N   +  +    I                N+      
Sbjct: 229 QSLEYVLT-------------YENRYNEPEQYEEIIIRANKKGEIIQLKDIANVRLGSEF 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L        +       +G+  I+      A L     P     +         
Sbjct: 276 FDIYSNLDGKPSASIVLKQTLGTNGSDVIKEVKAKLAELEVDLPPDVDFQISYDVSNFLD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+F+ +   +  L+   ++ +++I    ++ L G ++ L +
Sbjct: 336 ASIEQVLHTLRDAFILVAIVVFLFLGDWRSTLIPIIAVPVSLIGAFFVMQLFGLSINLIT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD+ I+V E +  +   +  + + +           I    +  +   +
Sbjct: 396 LFALVLAIGIVVDNAIVVVEAVHVKMEEEKLTPYKASYEVLGEIGGAIIAITLVMVSVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      R F+ITM  SI+IS   A+++   +   +++    K+         F
Sbjct: 456 PICFMTGPVGVFYRQFSITMAGSIVISAIVALTLTPVLCAMLLKNNHGKAKKSPIDKFIF 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                      +       I     +    L    
Sbjct: 516 WFNKGFERLTGKYVVILNKIVARRIVTFGILAAFC 550



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 103/283 (36%), Gaps = 9/283 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                        N   + +   ++ + AN+  ++  ++         +      + +  
Sbjct: 226 MTSQSLEYVLTYENRYNEPEQYEEIIIRANKKGEIIQLKDIANVRLGSEFFDIYSNLDGK 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGV 673
               +  +       + V++ VK K+ E+           +   +S  L   I + +  +
Sbjct: 286 PSASIVLKQTLGTNGSDVIKEVKAKLAELEVDLPPDVDFQISYDVSNFLDASIEQVLHTL 345

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + I + I +++    W   L  I  + + +        LFG+  NL  + A++  IG 
Sbjct: 346 RDAFILVAIVVFLFLGDWRSTLIPIIAVPVSLIGAFFVMQLFGLSINLITLFALVLAIGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V++ +VV + +   +K+    ++      + + E  G  +  ++      +P+    G 
Sbjct: 406 VVDNAIVVVEAVH--VKMEEEKLTPYKASYEVLGEIGGAIIAITLVMVSVFIPICFMTGP 463

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           V      F+I MA  IV++A  ++ +   +   +       A+
Sbjct: 464 VGVFYRQFSITMAGSIVISAIVALTLTPVLCAMLLKNNHGKAK 506



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/196 (9%), Positives = 62/196 (31%), Gaps = 6/196 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +  +K+   + +P       E +    +        + +++      +       +  
Sbjct: 836  DAINAIKEVAAKELPKGYDIAWEGLSYDEASRGNESTYIFIVVLIFVYFVLAAQYESFLL 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I +L + +  +     + G+  ++ A   V+ L+G    + V++ +    +++   
Sbjct: 896  PFAVILSLPVGVFGSFFLLKVMGLANDVYAQIGVIMLVGLLGKNAVLIVE---LSVQKQK 952

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAA 809
               +  +   +         + TS A    ++P+    G   I   +       G+++  
Sbjct: 953  QGATVLEAAIEGSRARFRPILMTSFAFIAGLIPLVMATGAGAIGNRTIGGSSLGGMLIGT 1012

Query: 810  SSSIFIAAPILLFIYD 825
               + I   +      
Sbjct: 1013 LGGVLIIPGLYYIFAK 1028


>gi|330816304|ref|YP_004360009.1| transporter, hydrophobe/amphiphile efflux-1 family [Burkholderia
           gladioli BSR3]
 gi|327368697|gb|AEA60053.1| transporter, hydrophobe/amphiphile efflux-1 family [Burkholderia
           gladioli BSR3]
          Length = 1054

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/552 (11%), Positives = 148/552 (26%), Gaps = 39/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ + +  IGL            + ++P  +P               + +    
Sbjct: 10  RPRFATVVSAFLTLIGLGAMFV-----LPVAQYPEIVPPT-------------VQVTTSY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S +   N    +T++F               
Sbjct: 52  PGASADTIARTVATPLEQQINGVENMLYMSSQSTGNGQLTVTVTFRIGTDLNVAQMLTQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q    +L  D ++  +         ++             +  S        D +   
Sbjct: 112 RVQDALPRLPEDVQRLGVQVRKSTPSILLAVHLYSPNHSHDTLYLSNYATLHVKDTLARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP R      T +++       N      +     +    
Sbjct: 172 QGVGDVQIQGAREYAMRIWIDPDRAAAHDLTASEILAALRAQNVQVSAGILNQPPVARGA 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  VE    ++                +    +   +   R         +    A  
Sbjct: 232 AYQINVEALGRLA-------------TPEQFGDIVLKSDPQGRVTHLRDIGRVEVGAADY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +   +   +              L+          +          
Sbjct: 279 GATSFKDRDDATAMLIYAEPGANSLAVEHEVLAAMEGLKKEFPAGVDYQIIYDPTIFIGK 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  +   LV+ V+F+ +   +  ++   +I ++++ +  +L+  G +L   S+
Sbjct: 339 SVDEVITTIFVAILLVVGVVFVFLQNWRATIIPVVAIPVSLLGSFIVLATFGISLNNLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL +G+ VD  I+V E +    R   S   +          A  +I  +     + +
Sbjct: 399 FGLVLAVGIVVDDAIVVVENVERNMRAGMSAVEAAHRTMDEVGGALLSIALTLCAVFVPS 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G   R FA+T+  S +IS F ++++  A+   + +               FL 
Sbjct: 459 AFLSGISGLFFRQFAVTIAASTVISCFVSLTLSPALCAVLFKSHHGHEAGRGGRIARFLD 518

Query: 535 PDCIAIQFMRAR 546
                      R
Sbjct: 519 AGFARFNRGFER 530



 Score = 65.9 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 80/251 (31%), Gaps = 10/251 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A   V +  V +  +      +   +                   A  R+ E+  + + 
Sbjct: 801  QAGEMVPIGSVATFEDRTIPYRVPRYDLYPAAEVQGAAAPGVATGTALHRMEELAHEVLP 860

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            + +             K +  L+  G   + +  + +         W   L  +  + + 
Sbjct: 861  QGISFEWTDLAYQQQQKGTPTLVVFGAAALFVFLVLV----AQYESWKLPLAIVLIVPMC 916

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I  ++   +L G+  ++ A    + L+G +  + +++ +  R   +         +    
Sbjct: 917  ILASVTGLSLRGMPIDILAQIGFVVLVGLAAKNAILIVEFAR---QKEEEGSDAAEAAVH 973

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + TS A  + V P+AV    G  +  S    + FG++      +       
Sbjct: 974  AARTRLRPILMTSFAFILGVAPLAVATGAGAEMRQSLGTAVLFGMLGVTGFGLLFTPAFY 1033

Query: 821  LFIYDWRAKNA 831
            +FI  +  K  
Sbjct: 1034 VFIRRFGLKKK 1044



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +  +  + + +  +    A FGI  N  ++  ++  +G  V+D +VV + + +NM+
Sbjct: 365 WRATIIPVVAIPVSLLGSFIVLATFGISLNNLSLFGLVLAVGIVVDDAIVVVENVERNMR 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S  +   ++++E  G  +  ++      +P A   G        FA+ +A   V
Sbjct: 425 A---GMSAVEAAHRTMDEVGGALLSIALTLCAVFVPSAFLSGISGLFFRQFAVTIAASTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   S+ ++  +   ++ 
Sbjct: 482 ISCFVSLTLSPALCAVLFK 500


>gi|1707645|emb|CAA67864.1| hypothetical protein [Pseudomonas aeruginosa PAO1]
          Length = 1062

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 67/608 (11%), Positives = 159/608 (26%), Gaps = 31/608 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G +        Q  +  +P  +P   +                 
Sbjct: 9   QRPIFAAVLSLLILIGGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +N   +V   + 
Sbjct: 55  NPKVIGETVASPLEQAITGVENMLYMSSQSTSDGKLTLTITFALGTDLDNAQVQVQNRVT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               KL  +  +  +          ++            +  S   +    D++   +  
Sbjct: 115 RTEPKLPEEVTRLGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAVLNVKDELARLDGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++     T   +       N        G     +    Q
Sbjct: 175 GDVQLFGLGDYSLRVWLDPNKVASRNLTATDVVNAIREQNRQVAAGTLGAPPAPNDTIFQ 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +    I                 +          
Sbjct: 235 LSINTQGRLVTEE-------------EFENIIIRAGANGEITRLRDIARVELGSNQYALR 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L            +   +            A L+          +         GS  
Sbjct: 282 SLLNNKPAVAIPIFQRPGSNAIEISNLVREKMAELKHSFPQGMDYSIVYDPTIFVRGSIE 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ +++I T A++ +LG +L   S+ G+
Sbjct: 342 AVVHTLFEALVLVVLVVILFLQTWRASIIPLAAVPVSLIGTFAVMHMLGFSLNALSLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +            +           I  + +      +   F 
Sbjct: 402 VLAIGIVVDDAIVVVENVERNIGLGLKPVEATKRAMREVTGPIIATALVLCAVFIPTAFI 461

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R FA+T+ +S +IS F ++++  A+   +++         +      L    
Sbjct: 462 SGLTGQFYRQFALTIAISTVISAFNSLTLSPALAAVLLKGHHEPKDRFSVFLDKLLGSWL 521

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                        G     +           +  G+               V     +  
Sbjct: 522 FRPFNRFFDRASHGYVGTVNRVLRGSSIALLVYGGLMVLTYFGFSSTPTGFVPQQDKQYL 581

Query: 598 LESLQIGD 605
           +   Q+ D
Sbjct: 582 VAFAQLPD 589



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 69/237 (29%), Gaps = 9/237 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      D            L         S      +E + K+               
Sbjct: 816  KVSDTSGPDRVMHYNGFITAELNGAPAAGYSSGQAQAAIEKLLKEELPNGMTYEWTELTY 875

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                     +    V  +   +A L+       W   L  I  + + +   +    L G 
Sbjct: 876  QQILAGNTAL---FVFPLCVLLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVILAGS 932

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + N+     ++ L+G +  + +++ +  +         +     + ++    L   + TS
Sbjct: 933  DNNIFTQIGLIVLVGLACKNAILIVEFAKD---KQEEGMDRVAAVLEACRLRLRPILMTS 989

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +A  + V+P+ +    G  +  +  + +  G++      + +     + I  +    
Sbjct: 990  IAFIMGVVPLVISTGAGAEMRHAMGVAVFSGMIGVTFFGLLLTPVFYVLIRRFVENR 1046



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 9/148 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     + G   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLAAVPVSLIGTFAVMHMLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIG 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP--MAVWG--GSVIGSFAIPMAFGI 805
           L        +   +++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 LGLK---PVEATKRAMREVTGPIIATAL-VLCAVFIPTAFISGLTGQFYRQFALTIAIST 480

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNAR 832
           V++A +S+ ++  +  + +        R
Sbjct: 481 VISAFNSLTLSPALAAVLLKGHHEPKDR 508


>gi|301309120|ref|ZP_07215064.1| multidrug efflux RND transporter MexF [Bacteroides sp. 20_3]
 gi|300832802|gb|EFK63428.1| multidrug efflux RND transporter MexF [Bacteroides sp. 20_3]
          Length = 1045

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/688 (11%), Positives = 186/688 (27%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + ++P   P               + +    
Sbjct: 8   RPIFATVLALIIVVAGLVT-----LNILPIAQYPEITPPT-------------VQVSAVY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +     V  
Sbjct: 50  PGADAQTVAQTVGLPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVMVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        + T  +    +++   +    I   +  S       IDQ+   
Sbjct: 110 RVSIAQSSLPEPVIVQGITTRKQSSNIVMMLTLSSKDSIYDGLYLSNYATLNMIDQLTRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP  +R    T   +       N        G   LR  +
Sbjct: 170 PGVGSVQVMGAGNYSMRIWLDPEAMRIRNLTPDMVYQAISTQNAQVSAGYVGQPILRADN 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  ++                +    +     G +         I    +  
Sbjct: 230 PYQYTLTVKGRLT-------------TPDEFGNIVLKTGQGGKILRLKDIARIELGSSSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L+               +     +        L +         V          
Sbjct: 277 NVVSKLSGQPTAAIAIYQLPGSNSLDVSKVVKAKMKELGSSLPEGVEYKVTLDTTEVIDA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  ++   +I +++I TLA+++ LG ++   ++
Sbjct: 337 SIHEVLITFLETTLLVVLVIFLFLQNFRAVVIPFITIPVSLIGTLAVMAALGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L I + VD  I+V E           +   ++          I    +  L   + 
Sbjct: 397 FGLILAIAVVVDDAIVVVENSTRLLDTGKYTAHEAVSKAMDEIVGPIVGVVLVLLAVFIP 456

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDIN 526
             F  G +    + FA+T+  + ++S F ++++  ++    +            K  +  
Sbjct: 457 TTFISGISGQLYKQFALTIAAATVLSGFNSLTLTPSLCALFLEKNTEEPKFFLFKGFNKV 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +     R     +   I+ ++  I  +         +  G   +     
Sbjct: 517 YGKTQKMYDSIVERMLKRPGAAMIVYGIITAVAVILFMRWPTTFIPEEDDGYFLVVSQLP 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L+   +  + +     ++       +         G+         ++K       
Sbjct: 577 PAASLNRTEAVTKQIDEILKTYPEVKSFISVSGFSVMGGGEQSNTATFFVILKNWNERKG 636

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              T +       + +  +    + G++
Sbjct: 637 KEHTAEAVTNRFNREASAIQEAQVFGMV 664



 Score = 38.9 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 96/245 (39%), Gaps = 8/245 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          ++  +        +   Q    +S+  ++V++   K++   +P     
Sbjct: 265 DIARIELGSSSYNVVSKLSGQPTAAIAIYQLPGSNSLDVSKVVKAKMKELGSSLPEGVEY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
              +   ++    I + ++  + + + +++ I++  + +   +    T+ + +  TL   
Sbjct: 325 KVTLDTTEVIDASIHEVLITFLETTLLVVLVIFLFLQNFRAVVIPFITIPVSLIGTLAVM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDLIDKSINETLG 770
           A  G   N   +  ++  I   V+D +VV +    + +L  T   +  + + K+++E +G
Sbjct: 385 AALGFSINTLTLFGLILAIAVVVDDAIVVVEN---STRLLDTGKYTAHEAVSKAMDEIVG 441

Query: 771 RSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V   +      +P   + G  G +   FA+ +A   V++  +S+ +   +     +  
Sbjct: 442 PIVGVVLVLLAVFIPTTFISGISGQLYKQFALTIAAATVLSGFNSLTLTPSLCALFLEKN 501

Query: 828 AKNAR 832
            +  +
Sbjct: 502 TEEPK 506


>gi|167590210|ref|ZP_02382598.1| multidrug efflux pump BpeF [Burkholderia ubonensis Bu]
          Length = 681

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/507 (12%), Positives = 147/507 (28%), Gaps = 31/507 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L ++I   G++      L    +  +P  +P              +       
Sbjct: 10  RPIFAGVLSTLILLAGIIS-----LYFLPIAEYPEVVPPVI---------AVNAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVEGMLYMQSQANSDGNLTLTVTFKVGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  D ++  + T        +                    I     ++       
Sbjct: 116 AFPKLPADVQRLGVTTVKSSTTQTIAVHLVSPNNRYDVNYLRNYGILNIKSRLERIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++     T   +       N      + G + +R +   Q 
Sbjct: 176 EVRIWGGGDYSMRIWLDPQKIAARGLTATDVVNAIREQNVQVAAGVIGSQPMRGNVPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +          +     +I    +      
Sbjct: 236 SVNTRGRLQSED-------------EFGAIVIKTAQAGGVTYLRDVAHIELGASDYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++                +     +      A ++A         +          S + 
Sbjct: 283 MVDGKPAVGFGIFQAPGGNALTISDKVREAMAEIKADMPAGVDYRIVFDPTKFVRSSIAA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T  LL + G ++   S+ G+V
Sbjct: 343 VVSTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIVGTFTLLLMFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +     +  S   +  +      + I    +T     + L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIARGLSPKDATYLAMKEVSTPIIAIALTLSSVFIPLAFMP 462

Query: 482 ---GGAVRGFAITMGLSILISMFTAIS 505
              G   R FA+T+ +S +IS F +++
Sbjct: 463 GLSGEFYRQFALTIAISTIISAFNSLT 489



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFTLLLMFGFSINALSLFGMVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV 806
                +S +D    ++ E     +  ++      +P+A   G        FA+     I 
Sbjct: 425 ---RGLSPKDATYLAMKEVSTPIIAIALTLSSVFIPLAFMPGLSGEFYRQFALT----IA 477

Query: 807 VAASSSIF 814
           ++   S F
Sbjct: 478 ISTIISAF 485


>gi|126664107|ref|ZP_01735100.1| multidrug efflux membrane fusion protein [Flavobacteria bacterium
           BAL38]
 gi|126623821|gb|EAZ94516.1| multidrug efflux membrane fusion protein [Flavobacteria bacterium
           BAL38]
          Length = 1029

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/550 (12%), Positives = 154/550 (28%), Gaps = 38/550 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L   I   G +           +  +PS  P          +          
Sbjct: 9   KRPVLTIVLNLTIILFGFI-----GYKFLGVREYPSIDPA---------QISVRTNYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +        S  Q  + IT+ F   +  E  A+ V   +  
Sbjct: 55  NADIIESQITEPLEKAINAIDGIKNITSSSNQGSSIITIEFNLDKDLEAAANDVRDKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +  +     S  +    +     +A+E S         ++       
Sbjct: 115 AVRSLPEDIDSQPI-VSKADANSEAIISMTVQSNTKNALELSDYAENVISQRLETIPGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP +L     T A +       N               +     
Sbjct: 174 GIQIWGQKRYAMRLWIDPDKLAAYGITVADVRTALNTQNVELPSGKITGNNTELTVKTIG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + E                      DI       +                +    
Sbjct: 234 NLTSEKEF--------------------NDIIIRSENDKIVRLSDVGRATLEAENIETQM 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +   +           +     +        L+          +          S + 
Sbjct: 274 TQSGKPLVGVAIVPLPGANYLDISKAFYKEFDQLKKELPKDIDLNIAIDTTTFVKRSVTE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV++++++              I +++I T  ++ L G ++ + ++  IV
Sbjct: 334 VAETLAISILLVILIIYLFFRDWAIAFRPLIDIPVSLIATFFIMWLFGFSINVLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478
           L  GL VD  I+V E I ++  +  S   +   G +    A  +I  +     +  + L 
Sbjct: 394 LATGLVVDDGIVVTENIYKKVEEGMSPIEAAIKGSNEIFFAVISISITLAAVFLPVIFLE 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
            F G   R F I +G ++L+S F ++++   +  ++++  + K       +  +      
Sbjct: 454 GFVGRLFREFGIVIGAAVLVSAFVSLTLTPMLNAYLMKGGEQKKSKFYLATEPYFEKLNA 513

Query: 539 AIQFMRARFW 548
                  RF 
Sbjct: 514 TYASNLKRFI 523



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 7/151 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  A   +  + + +  T     LFG   N+  + A++   G  V+D +VV + + 
Sbjct: 352 FFRDWAIAFRPLIDIPVSLIATFFIMWLFGFSINVLTLLAIVLATGLVVDDGIVVTENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
              K     +S  +   K  NE     +    T  A F+ V+ +  + G +   F I + 
Sbjct: 411 --YKKVEEGMSPIEAAIKGSNEIFFAVISISITLAAVFLPVIFLEGFVGRLFREFGIVIG 468

Query: 803 FGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
             ++V+A  S+ +   +    +     K ++
Sbjct: 469 AAVLVSAFVSLTLTPMLNAYLMKGGEQKKSK 499



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 54/143 (37%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      I T+ + +   L    LFG  +N+ +    + LIG    + +++ +      
Sbjct: 877  SFIDPFIIILTVPMAVAGALFSLWLFGQTWNIFSQIGTIMLIGLVTKNGILIVEFAN--- 933

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L     S  D I ++    L   + TS+A  +  LP+A+             + +  G 
Sbjct: 934  QLREQGKSKYDAILEASEARLRPILMTSLAIALGALPIALSLGAASESRMGMGVVIVGGT 993

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
            + +   ++F+   I L     + 
Sbjct: 994  MFSLILTLFVIPTIYLMWSRAKK 1016


>gi|126642694|ref|YP_001085678.1| RND efflux transporter [Acinetobacter baumannii ATCC 17978]
          Length = 1003

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/648 (12%), Positives = 195/648 (30%), Gaps = 38/648 (5%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKEGI- 86
              ++R+P   P               + +  +        ++      L   ++     
Sbjct: 2   NLPVERYPDIAPPK-------------ITVSANYSGADAQTVEQSVTQILEQQIQGIDHL 48

Query: 87  ---GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
                 S    +++IT+SF +    +    +V   + GV  +L  + ++  +  +     
Sbjct: 49  LYFSSSSDSSGRSRITISFDNGTNPDTAQVQVQNSISGVIRRLPDEVQRQGVTVSKSLGD 108

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
           + ++         +  IE S  +    +D +   E   +          +    +P +L+
Sbjct: 109 TFMVIGLYDSTGKTGNIELSDYLTTHVVDNLNRIEGVGETDVFGSQ-YAMRIWLNPDKLK 167

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           Q     + ++      N        G   + D       V     +              
Sbjct: 168 QYNLMPSDVANAITAQNTQVAAGAIGDLPVIDGQYLNTKVTAGSRL-------------K 214

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
                   +      A   +      +            +          S  +  +   
Sbjct: 215 TVEDFKNIVVKSNKTASYVYLKDIARVELGAENYQSFNTINGYPAAGLGISLSSGANAIQ 274

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T +        L          +    N      S      T      LV++V+F+ +  
Sbjct: 275 TSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLFLQS 334

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  L+   ++ + ++ T A+L +LG ++   ++  +VL IGL VD  I+V E +     
Sbjct: 335 WRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVENVERLMH 394

Query: 444 KNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILIS 499
           +   S   +           +    +      + + F GG      R F+IT+  ++ +S
Sbjct: 395 EQHLSPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSITLVAAMALS 454

Query: 500 MFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +  A+ +  A+   I++                  L    I +      +    I I  +
Sbjct: 455 LIVALILTPALCALILKPNPQPQRWAVWFNQKIEQLKNQYIKLVQTSIHYSKSVIVIFVA 514

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           + ++  LF +GL  G   K    +  +  + VD + +  + +  +     F   + +   
Sbjct: 515 LIAVFTLFYNGLKSGFIPKEDQGILSVQIKLVDSAPIYQSQKIGEQVRQYFLTQEDKNVD 574

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           LV ++Y    S     + +         V      + E +  +  +  
Sbjct: 575 LVLIRYGRNYSGTGQNLAQGFIALKPWDVRTGKENSAEAIQKRAMKYF 622



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 85/212 (40%), Gaps = 8/212 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 272 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 331

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV + 
Sbjct: 332 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVVVEN 388

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIP 800
           +     ++   +S ++   +S+ E  G  V  ++      +PM+  GG   VI   F+I 
Sbjct: 389 V--ERLMHEQHLSPKEAAIESMGEISGALVGITLVLTAVFIPMSFLGGSIGVIYRQFSIT 446

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   + ++   ++ +   +   I     +  R
Sbjct: 447 LVAAMALSLIVALILTPALCALILKPNPQPQR 478



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 77/246 (31%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         S             ++           D  + +   + +K     +    
Sbjct: 759  NDQNEMVPFSSFANFSWGGAPEIVKRYMGYSALQLQADVASDSSSGQAMKDVEQLVNQQK 818

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTL 708
             I           ++   + +   +ISA  + + +   ++      A+ T I L +  ++
Sbjct: 819  DIGLAWTGLSFEEQKSTNQAVWLYLISAGFIFLCLAALYESLSIPAAVMTSIPLGVGGSV 878

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F  +FG+  ++    A+LT IG S  + +++ +             +      +  +  
Sbjct: 879  IFSYIFGLPNDVYFQIALLTTIGLSCKNAILIVEFA---ALAQEKGKNAIQAALEGASLR 935

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TS+A    V+P+      G        I +  G++      +F    + + +  
Sbjct: 936  LRPILMTSLAFGAGVIPLVFAQGAGAVSRQEIGISILGGVMFGTVLVLFFIPVMYVLLRS 995

Query: 826  WRAKNA 831
                 A
Sbjct: 996  LFKSKA 1001


>gi|221067345|ref|ZP_03543450.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Comamonas testosteroni KF-1]
 gi|220712368|gb|EED67736.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Comamonas testosteroni KF-1]
          Length = 1076

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/585 (11%), Positives = 157/585 (26%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +    +  +P   P + +                  
Sbjct: 10  RPIFAGVLSVLIFLAGLIA-----MRTLPISEYPEVAPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++FA     +     V   +  
Sbjct: 56  PKVIAETVATPLEESINGVEGMLYMGSQATTDGVMTLTVTFALGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   +   
Sbjct: 116 AEPRLPEEVRRLGITTVKSAPDLTMVVHMVSPNGRYDIDYLRNYAVLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   + A +       N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRAWLDPQKVAQRGLSAADVVAAIRGQNVQAAAGVVGASPGLPGVDMQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    A      
Sbjct: 236 SINAQGRLQTEE-------------EFGDIIVKTGSDGAVTRLRDVARLELGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +            A L+          +          S   
Sbjct: 283 LLNNDPAVGMGVFQAPGSNALEISANVRSTMAELQKHMPEGVEFRIAYDPTQFVRASIKS 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++V+ T A+L LLG ++   S+ G+V
Sbjct: 343 VIQTLLEAVALVVVVVILFLQTWRASIIPLLAVPVSVVGTFAVLHLLGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLSPRQATYRAMQEVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   ++R        +             
Sbjct: 463 GLTGQFYRQFAVTIAISTVISAINSLTLSPALSALLLRGHDAPKDALTRGMERVLGGFFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R      G           +L  + +  G  +     +
Sbjct: 523 RFNALFRRGSDAYSGGVQRVIGRKALMLVIYAVLVGATWGLFKLV 567



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 85/257 (33%), Gaps = 12/257 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
             +  G +++       V LS +   LE     + + +        +         S    
Sbjct: 790  AEDVGLLKVRSTTGEMVPLSALMK-LEPSFGPERAMRYNGFLAADVNGGPAPGFSSGQAQ 848

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +E +  +                            ++   I+ + + + +  +++   
Sbjct: 849  AAVERIAAETLPPGIGFEWTELTYQEILAGN----SAVLVFPIAILLVFLVLAAQYESLT 904

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  I  + + +   +    L G + N+     ++ L+G S  + +++ +  R+   L 
Sbjct: 905  LPIAIILIVPMGLLAAMTGVWLSGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE---LE 961

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                +      ++    L   + TS+A  + VLP+ +    G  +  +  + +  G++  
Sbjct: 962  FAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGAEMRSAMGVAVFAGMIGV 1021

Query: 809  ASSSIFIAAPILLFIYD 825
             +  +F+     + +  
Sbjct: 1022 TAFGLFLTPVFYVVLRR 1038



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 83/228 (36%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L +     +      G     +    +   +  Q  + E V+ +I      
Sbjct: 275 AADYSLRSLLNNDPAVGMGVFQAPGSNALEISANVRSTMAELQKHMPEGVEFRIAYDPTQ 334

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + V   +   +    +V ++               W  ++  +  + + +  T 
Sbjct: 335 FVRASIKSVIQTLLEAVALVVVVVILFLQT-----------WRASIIPLLAVPVSVVGTF 383

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               L G   N  ++  ++  IG  V+D +VV + + +N++     +S R    +++ E 
Sbjct: 384 AVLHLLGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEA---GLSPRQATYRAMQEV 440

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            G  +  ++      +P+A      G     FA+ +A   V++A +S+
Sbjct: 441 SGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTVISAINSL 488


>gi|149921273|ref|ZP_01909729.1| SecF protein [Plesiocystis pacifica SIR-1]
 gi|149817933|gb|EDM77395.1| SecF protein [Plesiocystis pacifica SIR-1]
          Length = 540

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 1/196 (0%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
            +  V  K      +  I  +E VG K+  +L   G   ++ +   + +++ IRF   FA
Sbjct: 247 DISHVLDKRLGDGTVDHIVASETVGAKVGNQLKLDGAKAMMFAIGFIFLFVMIRFDLRFA 306

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            G I  L  D    +G FAL G EFNL ++AAVLT+IGYS+ND +VV+DR+R+ + L+  
Sbjct: 307 PGGIVALAHDALIVIGAFALTGKEFNLQSIAAVLTIIGYSINDTIVVFDRVRERVALH-R 365

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
                +  + ++NETL R++ TS    I VL   + G   I  F+  +  G++    SS+
Sbjct: 366 DDPIEETTNTALNETLSRTILTSTTTLIVVLTTWILGSGPIKDFSFALFIGLIAGTYSSL 425

Query: 814 FIAAPILLFIYDWRAK 829
           F+A+P+ L++ +   K
Sbjct: 426 FVASPVFLWVNEKIYK 441


>gi|291543402|emb|CBL16511.1| protein-export membrane protein SecF [Ruminococcus sp. 18P13]
          Length = 320

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/304 (25%), Positives = 140/304 (46%), Gaps = 13/304 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             ++      + IS +  +C+I      G+   I+FKGG  L       VD + V +  +
Sbjct: 8   RDYVGHMHIYIIISAIMILCAIAGSLIFGVEVAIEFKGGTILNYSYTGDVDTAQVETLAK 67

Query: 600 SLQIGDISFQNF-----DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +    ++ Q          K   +      G    + +       +         +  +
Sbjct: 68  GILNTPVTIQTGEALGDGSGKTMTISFSCAEGSFTPEVQGQLTTSIQGKFPDNQIKLLES 127

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILDITKTLGF 710
             V P   ++   K +V  + +++ ++IYI +RFK    W   + AI  L+ D+    G 
Sbjct: 128 NDVSPTSGKQFFYKCLVAALAASVILIIYIALRFKRISGWSAGMCAILALVHDLIAAYGT 187

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           F + G E N   +A +LT++GYSVN+ +V+YDR+R+N KL     S R+L++ SI++T+ 
Sbjct: 188 FVIAGFEINSNFMAVLLTILGYSVNNTMVIYDRIRENQKLMDKKTSIRELVNTSISQTMS 247

Query: 771 RSVYTSMAAFISVLPM----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           RS+ TS+    ++L +     +     I SF+IP+  G++    SSI IA  + ++  + 
Sbjct: 248 RSIRTSVTTISTMLIISIVAVIMQVDSILSFSIPLTVGLISGTYSSICIAPVVWVWWTEK 307

Query: 827 RAKN 830
           R K 
Sbjct: 308 RGKK 311


>gi|289672946|ref|ZP_06493836.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae FF5]
          Length = 645

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 159/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 SEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGADGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLSGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDRMLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQD 577



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVAATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLSGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|220922960|ref|YP_002498262.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylobacterium nodulans ORS 2060]
 gi|219947567|gb|ACL57959.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium nodulans ORS 2060]
          Length = 1056

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 87/683 (12%), Positives = 181/683 (26%), Gaps = 40/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   +   I  +G +           + ++P   P                  +   
Sbjct: 8   RPIFAWAISIFIMLVGAISIAF-----LPISQYPDVAPVTIQ---------VTATYQGAP 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + +        +     Q +IT SFA           V   ++ 
Sbjct: 54  PEPLYDGVTRIIEEELNGIPGLMYFESTSDTSGQAQITASFAPGSDPAKAMVAVQNRIKR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L     +  +         +     +        IE      R+ + ++       
Sbjct: 114 IEGRLPRAVIQQGIQVEEASTSFLQFVTVSSRDGSMSEIELGDLATRRILGELRRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP+RL  L  T   ++      N      + G    R+      
Sbjct: 174 RATMF-SPEKAMRIWIDPARLVGLSLTAGDVTAAVGAQNAQIASGIIGAPPAREGQRIAA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K +++ +              +    +                 +           
Sbjct: 233 SVLVKGQLTSVR-------------EFEEIVLRANPDGSLVRLRDVAEVELGGQTYQYQS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T        A L           V          S   
Sbjct: 280 RLDGHPAAGIGVQLAPGGNALATATAVRAKIAHLSKTLPANVRVDVPYDTTPFVRVSIQK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+F+ +   ++ L+    + + ++ T A L + G ++ + ++ G+V
Sbjct: 340 VLMTLGEAMVLVFAVMFLFLQNIRYTLIPAIVVPVALLGTCAALLVAGFSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    I       +   V + FF
Sbjct: 400 LAIGILVDDAIVVVENVERIMAEEGLPPREATRKAMGQITGAIIGITAVLVAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
            G      R F+I M  SI  S F A+S+  A+    +    + K+   +    +F    
Sbjct: 460 PGSVGVIYRQFSIVMATSIAFSAFLALSLTPALCATLLKPVDEGKNYAESGFFGWFNRWF 519

Query: 537 CIAIQFMRA------RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               +  RA      R     + I   I          +             ++  +   
Sbjct: 520 RTGTRAYRAGVGGILRRPVRALVIYVVILGTLGWGVLRMPSSFLPLEDQGYVLVDVQTPP 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S     L+ L+  +  F       N +  L Y          +  +  K   E  P  +
Sbjct: 580 ESAAGRTLDVLKRVEEHFAAEPAVANRVTLLGYGFSGQGQNAGLAFITLKDWNERGPNDS 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
                     +   L    ++ +
Sbjct: 640 ADALSARANAVLGTLPDAIVMSL 662



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q      +        +       G+++A    +      +++ +P 
Sbjct: 260 VRLRDVAEVELGGQTYQYQSRLDGHPAAGIGVQLAPGGNALATATAVRAKIAHLSKTLPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +   +         R  I+K ++ +  + + +   +++  +   + L     + + +  T
Sbjct: 320 NVRVDVPYDTTPFVRVSIQKVLMTLGEAMVLVFAVMFLFLQNIRYTLIPAIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N+  +  ++  IG  V+D +VV + +     +    +  R+   K++ +
Sbjct: 380 CAALLVAGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPREATRKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  +       +PMA + GSV      F+I MA  I  +A  ++ +   +   + 
Sbjct: 438 ITGAIIGITAVLVAVFVPMAFFPGSVGVIYRQFSIVMATSIAFSAFLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 65/160 (40%), Gaps = 7/160 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            + +  + +S   + + +   ++ W   +  +  +   +  ++    L  +  ++     +
Sbjct: 867  QAMYLLALSLFCVFLCLAALYESWSIPIAVLLVVPTGVVGSVFAMLLRDMPNDVYFKVGL 926

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T++G +  + +++ +  +    L       R+ + ++        + TS A  + V+P+
Sbjct: 927  ITVVGLTTKNAILIIEMAKD---LVAQGRPIREAVIEACELRFRPILMTSFAFILGVVPL 983

Query: 787  AVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            A+  G+ +         +  G+V A   ++FI     + I
Sbjct: 984  AIATGASMNSQRVIGTGVFGGMVTATVLAVFITPLFYVLI 1023


>gi|149187811|ref|ZP_01866107.1| putative protein-export membrane protein SecF [Vibrio shilonii AK1]
 gi|148838207|gb|EDL55148.1| putative protein-export membrane protein SecF [Vibrio shilonii AK1]
          Length = 300

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/283 (27%), Positives = 144/283 (50%), Gaps = 8/283 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R RF    IS L    ++  +   G N+G+DF GG+   V  +  +  + ++++L++  +
Sbjct: 10  RVRFSMSAISALLFALAVAFISFKGFNWGLDFTGGLVAEVRLDASIVATELKASLDNALM 69

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            D+   +      +++R             V+  +   +  I     I N+ +VGP++ +
Sbjct: 70  QDVQVVSSTEPGRWILRY-------NQLDDVVLSLTPALESISTSVEILNSSMVGPQVGQ 122

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           +++ +G V ++   +  ++Y+  RF+W  ALGA+  L+ DI   LG FA+  +EFNLT +
Sbjct: 123 DMVEQGGVAILACFMLTMLYLSYRFEWRLALGALVALVHDIVIVLGLFAVTQMEFNLTIL 182

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           AAVL ++GYS+ND +++ DR R+  K     ++   LI+ S+  T  R++ TS    ++V
Sbjct: 183 AAVLAVLGYSLNDSIIIADRARELFKAKPNELA-DTLINNSVLATFSRTLITSGTTLVTV 241

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             + + GG  +  FAI +  GI     SSI +   +   +   
Sbjct: 242 SSLWLLGGPALEGFAIALCVGIACGTWSSISLGVTLPQMMGVR 284


>gi|212690649|ref|ZP_03298777.1| hypothetical protein BACDOR_00136 [Bacteroides dorei DSM 17855]
 gi|237709691|ref|ZP_04540172.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|212666749|gb|EEB27321.1| hypothetical protein BACDOR_00136 [Bacteroides dorei DSM 17855]
 gi|229456327|gb|EEO62048.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 1038

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/610 (12%), Positives = 175/610 (28%), Gaps = 46/610 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLFVVAGLVT-----LNILPVAQYPDITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++F      +     V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSASGAYSLTVTFEVGTDIDMATVMVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L    K   +    +    +++   + D +    +  +       +DQ+   
Sbjct: 111 RVSVALNSLPEAVKVQGVTVQKQSSNIVMMLTLSGDSI-YDGLYLTNYANLNLVDQLTRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-LRDS 236
                          +    +P  +R    T  ++       N        G       +
Sbjct: 170 PGVGAVNVMGAGDYSMRVWLNPETMRIRNITPQQVYSAIQSQNMEVSAGYVGQPIGSSAN 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  K  +S                +    I   E   +         I    A 
Sbjct: 230 NDFQYTLNVKGRLSTSE-------------EFGDIILRVEDQGKVLRLRDVAKIELGSAE 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +     +      A L           V         
Sbjct: 277 YGVVSKLKGQPTAGIAVYQLPGSNSLDVSKGVRARMAELAETFPAGVKYNVTLDTTDVVH 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F  +   +  L+   +I +++I TLA+++ LG ++   +
Sbjct: 337 DSIDEVMKTFVEAIVLVVLVIFFFLQSWRAVLIPCLTIPVSLIGTLAVMAALGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L I + VD  I+V E       + +     + +         I       +   I
Sbjct: 397 LFGLILAIAIVVDDAIVVTENATRILDEGKLDARAATEQAMGEITGPIVGVVLVLLAVFI 456

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPL 528
            T ++    G   + FA+T+  S +IS F ++++  A+   +      +K       + +
Sbjct: 457 PTTLISGISGQLYKQFALTIAASTVISGFNSLTLTPAVCALLLRPTPMHKARLFRWFDSM 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           + +       +++++ AR      S +       L+F    +  I  +      +    P
Sbjct: 517 NDWMQRVYDASVKWLLARPVIAIGSYIVISVIAILMFVKWPSTFIPEEDDGYFMIAIQLP 576

Query: 589 VDLSVVRSNL 598
              S+ R+ +
Sbjct: 577 AASSLERTQM 586



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 74/238 (31%), Gaps = 10/238 (4%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V +   +      + +E     D   +        +         S      +  + K 
Sbjct: 788  VVNSKGEMVPFSSFTQIEQKLGMDQINRYNMYSAASITITPAAGSSSGQAIEAVGSLIKN 847

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                       +      +         I+ ++++    L+       W   + A+  L 
Sbjct: 848  QLGGEFGYEWTSVAYQETQAGNTTTIILIMALLVAY---LVLAAQYESWTSPVAAVMGLP 904

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I   +    + G+  ++     ++ LI  S  + +++ +  R   K        R+  
Sbjct: 905  VAILGAMLGCWVMGVPVSIYTQIGIILLIALSAKNGILIVEFARDYRKA---GNPIREAA 961

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA-SSSIFI 815
             ++ +  L   + TS    + V+P+      G     +    + FG+ V    ++++I
Sbjct: 962  YEAGHVRLRPILMTSFTFVLGVMPLLFATGAGAGSRVALGAAVVFGMAVNTIFATVYI 1019



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/431 (11%), Positives = 135/431 (31%), Gaps = 16/431 (3%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           +  + +  +      + +   +  D ++         +    S+  ++ +          
Sbjct: 76  MLYMSSNSSASGAYSLTVTFEVGTDIDMATVMVQNRVSVALNSLPEAVKVQGVTVQKQSS 135

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA---MMIFIIRYKKMK 521
           +  +   ++   ++             +     +    A++++ A    M   +  + M+
Sbjct: 136 NIVMMLTLSGDSIYDGLYLTNYANLNLVDQLTRVPGVGAVNVMGAGDYSMRVWLNPETMR 195

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +I P   +  I               +G S          +              +++
Sbjct: 196 IRNITPQQVYSAIQSQNMEVSAGYVGQPIGSSANNDFQYTLNVKGRLSTSEEFGDIILRV 255

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + + L  V           +  +        +   Q    +S+  ++ +     +
Sbjct: 256 E-DQGKVLRLRDVAKIELGSAEYGVVSKLKGQPTAGIAVYQLPGSNSLDVSKGVRARMAE 314

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           + E  P     N  +    +  + I + +   + + + +++ I+     W   L    T+
Sbjct: 315 LAETFPAGVKYNVTLDTTDVVHDSIDEVMKTFVEAIVLVVLVIFFFLQSWRAVLIPCLTI 374

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISF 757
            + +  TL   A  G   N   +  ++  I   V+D +VV +   R+    KL       
Sbjct: 375 PVSLIGTLAVMAALGFSINTLTLFGLILAIAIVVDDAIVVTENATRILDEGKL-----DA 429

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIF 814
           R   ++++ E  G  V   +      +P   + G  G +   FA+ +A   V++  +S+ 
Sbjct: 430 RAATEQAMGEITGPIVGVVLVLLAVFIPTTLISGISGQLYKQFALTIAASTVISGFNSLT 489

Query: 815 IAAPILLFIYD 825
           +   +   +  
Sbjct: 490 LTPAVCALLLR 500


>gi|84569890|gb|ABC59228.1| CmeB [Campylobacter jejuni]
          Length = 1039

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/570 (12%), Positives = 162/570 (28%), Gaps = 32/570 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +       +  I + IA    L    ++++PS  P                     +
Sbjct: 9   RPVFAS-----VVAIIISIAGIIGLANLPVEQYPSLTPPTVQ---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  + +        +    Q K+T+ F      +  A  V   +   
Sbjct: 55  AQTIASTVATPIEDAINGVDNMIYMDSTSSPGQMKLTVYFNIGTDPDQAAIDVNNRISAA 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            +KL    KK  +         + +     +    + I+    +    +D++        
Sbjct: 115 TAKLPEAVKKLGVTVRKSSSTILEVVSVYSEDSSMNDIDIYNYVSLNILDELKRIPGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +P  L +   T   +       N        G   + +       
Sbjct: 175 ASAIGNKNYSMRIWLEPDLLNKFGVTANDVINAVNDQNAQYATGKIGEEPVVNKSPQVIS 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  +  +                 +    I                 +            
Sbjct: 235 ITMQGRL-------------QTPQEFENIILRVNEDKSFLRIKDVAKVEIGAEQYNSTGR 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L        + + ++  +   T +        L           +          S    
Sbjct: 282 LNTSAAVPIMINLQSGANAVNTAKLINEKMQELSKNFPQGLKYQIPYDTTIFVKASIKEV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LVL+V+++ +   K  ++   ++ ++++ T A+L +LG ++ L ++  +VL
Sbjct: 342 IKTFVEALALVLVVMYLFLKNFKSTIIPMIAVPVSLLGTFAVLYVLGFSINLLTLFALVL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            IG+ VD  I+V E I     ++ +      ++      +   I    +   +   V F 
Sbjct: 402 AIGIVVDDAIIVVENIDRILHEDSNISVKDAAIKAMNEVSSPVISIVLVLCAVFIPVSFI 461

Query: 480 FG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G  G   R FA+T+ +S+ IS F A+++  ++    +   + K          F     
Sbjct: 462 SGFVGEIQRQFALTLAISVAISGFVALTLTPSLSALFLTRNESKPFYFIQKFNDFFDWST 521

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
                  A      I  +   C +     +
Sbjct: 522 SVFSSGVAYILKRTIRFVLVFCIMIGFIAY 551



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 92/248 (37%), Gaps = 13/248 (5%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  V       +  + + +        ++       ++V   +++    +++++  P   
Sbjct: 263 IKDVAKVEIGAEQYNSTGRLNTSAAVPIMINLQSGANAVNTAKLINEKMQELSKNFPQGL 322

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
                       +  I++ I   + +   +L+ +++  K +   +  +  + + +  T  
Sbjct: 323 KYQIPYDTTIFVKASIKEVIKTFVEALALVLVVMYLFLKNFKSTIIPMIAVPVSLLGTFA 382

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              + G   NL  + A++  IG  V+D ++V + +   +    ++IS +D   K++NE  
Sbjct: 383 VLYVLGFSINLLTLFALVLAIGIVVDDAIIVVENI-DRILHEDSNISVKDAAIKAMNEVS 441

Query: 770 GRSVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              +    +  + +  + +       + G +   FA+ +A  + ++   ++ +   +   
Sbjct: 442 SPVI----SIVLVLCAVFIPVSFISGFVGEIQRQFALTLAISVAISGFVALTLTPSLSAL 497

Query: 823 IYDWRAKN 830
                   
Sbjct: 498 FLTRNESK 505



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 67/187 (35%), Gaps = 10/187 (5%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                          G    ++  I + + +  ++ +W   L  IT +   +  ++   AL
Sbjct: 853  WSGSAYQEVSSKGAGAYAFVLGMIFVFLILAAQYERWLMPLAVITAVPFAVFGSILLVAL 912

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++     +L LIG S  + +++ +   +         S  +    +        V
Sbjct: 913  RGFDNDIYFQTGLLLLIGLSAKNAILIIEFAMEE--RLKKGKSIFEAAINAAKLRFRPIV 970

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR--- 827
             TS+A    VLPM      G +   S    +  G++ A++ +IF        + ++    
Sbjct: 971  MTSLAFTFGVLPMIFATGAGSASRHSLGTGLVGGMIAASTLAIFFVPLFFYLLENFNEWL 1030

Query: 828  -AKNARI 833
              K  +I
Sbjct: 1031 DKKRGKI 1037


>gi|224436481|ref|ZP_03657495.1| hypothetical protein HcinC1_00980 [Helicobacter cinaedi CCUG 18818]
          Length = 1043

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 77/591 (13%), Positives = 180/591 (30%), Gaps = 40/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  +I  +G +           ++ +P  +P   +                  
Sbjct: 8   RPIFAMVLSIVITLVGAICI-----TILPVEEYPQVVPNEIV---------VSATYSGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + ++       S        + + F++    +     VT  +Q 
Sbjct: 54  AEVMANTVASIIEDSINGVEGMLYMKSSSTSSGVMNLNVFFSNDANADMALVNVTNRVQS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + ++  + T       + +     D     +   +   I   I+++       
Sbjct: 114 ALAQLPAEVQRVGITTRKRSSTLLAVYAMYSDNPAHSSTFVANYGILNVINELKRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  +L Q   T ++++      N+      FG   +R      Y
Sbjct: 174 DVTPFGSQDYSMRIWLDIDKLSQNNLTPSEVAKVVSEQNSQFAVGSFGKEPMRSDIAFTY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +                    +    I                 +           
Sbjct: 234 SVTTQGR-------------FVSAEEFGNIIIRSNADGSALRLKDVAKVELGAKDYSVSP 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L     +    + +   +              L                      S + 
Sbjct: 281 LLDGKHASAFGIALQPGANALDVASAVEKKMQELSLSFPNGLHYKNVYNTTSFVKISINE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+I+++  +   +  ++   +I +++I T A + +LG ++ L ++ G++
Sbjct: 341 VIKTFIEAIVLVIIIMYFFLQNFRATIIPVIAIPVSIIGTFAGMYVLGFSINLLTLFGLI 400

Query: 422 LGIGLAVDSNILVNERIREENRK-------NQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           L IG+ VD  I+V E +               SV  +           +    +      
Sbjct: 401 LAIGIVVDDAIIVIENVERILHTETNELGEKYSVKEATLKAMGEIQGPVVAIVLVLCSVF 460

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F G   G   + FAIT+ +S++IS F A+S+  A+ + I++ K+ K      + RF
Sbjct: 461 IPVAFIGGFSGAIYKQFAITIVISVVISGFVALSLTPALCVSILKAKEPK--PFYLVRRF 518

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
               D +  +F       +   IL     + +L T    +     G +   
Sbjct: 519 NDFFDWLTHKFGEQIGKALRRGILLVALFVAILITTWELFSKLPTGLVPSE 569



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 78/207 (37%), Gaps = 8/207 (3%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
              +E   ++++   P               +  I + I   I + + ++I ++   + +
Sbjct: 304 ASAVEKKMQELSLSFPNGLHYKNVYNTTSFVKISINEVIKTFIEAIVLVIIIMYFFLQNF 363

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRM-RK 746
              +  +  + + I  T     + G   NL  +  ++  IG  V+D ++V    +R+   
Sbjct: 364 RATIIPVIAIPVSIIGTFAGMYVLGFSINLLTLFGLILAIGIVVDDAIIVIENVERILHT 423

Query: 747 NMKLYTTSISFRDLIDKSINET---LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
                    S ++   K++ E    +   V    + FI V  +  + G++   FAI +  
Sbjct: 424 ETNELGEKYSVKEATLKAMGEIQGPVVAIVLVLCSVFIPVAFIGGFSGAIYKQFAITIVI 483

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKN 830
            +V++   ++ +   + + I   +   
Sbjct: 484 SVVISGFVALSLTPALCVSILKAKEPK 510



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 59/165 (35%), Gaps = 6/165 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G +  I   I + + +  ++ +W   L  +T +   +        L G+  ++     +
Sbjct: 873  TGKLAFIFGLIFVFLILCAQYERWLMPLSVLTAVPFAVFGACLATMLRGLSNDIYFQIGL 932

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LI  S  + +++ +                +    +        + TS+A  I VLP+
Sbjct: 933  VMLIALSAKNAILIVE--FAQHLHEKEGKGILESAIGAAKLRFRPIIMTSLAFSIGVLPL 990

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            A+    G +   +    +  G++ A   +IF       ++  +  
Sbjct: 991  ALSSGAGSASRHAIGTGVIGGMLAATFIAIFFIPLFWSYVARFNE 1035


>gi|209515072|ref|ZP_03263941.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. H160]
 gi|209504698|gb|EEA04685.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. H160]
          Length = 1077

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 69/675 (10%), Positives = 163/675 (24%), Gaps = 39/675 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +           + ++P   P               + +    
Sbjct: 10  RPIFASVISIVITLGGAIAMF-----ALPVAQYPDVTPP-------------QITVSATY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   +        +   S       + + F      E     V  
Sbjct: 52  PGASADVVSNNVAAPIEQQVNGSDNMIYMNSSSSSTGNYTLNVYFQIGTNPELAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    +   +    +    +++           A   +       +D I   
Sbjct: 112 RVNLALPQLPTSVQSQGVQVQKKSSAFMMVIAVYSPTDRYDATYIANFTNIYVLDAIKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ QL  T A +       N        G      + 
Sbjct: 172 PGANQSSIFGNPDYAMRIWLKPDRMAQLGVTAADVQRVVANQNQQFAVGSIGQSPTGSAV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V     ++                   + +     GA                  
Sbjct: 232 QQSFAVTTTGRLAETSQFDN------------IIVRAASGGAAIVRLKDIGRAELGQKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +      A L+          +          
Sbjct: 280 SIRSRFQGKPATVLAVYQQPGANALDVSKQVRATLAELKKSFPEGMTYEIAMDTTEFTRA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV+IV+F+ +   +  L+   ++ ++++ T   + L+G ++ + ++
Sbjct: 340 SISDVIHTFFEALVLVVIVVFVFLQSLRATLIPIVAVPVSIVGTCMFMLLVGFSINMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +         S   +           +    +      V 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMTVHKLSPKEAAKQAMDEVAGPVVAIVLVLCAVFVP 459

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FAIT+ +S+++S   A+++  A+   +++    +            
Sbjct: 460 VAFLGGITGQLYKQFAITIAISVVLSGIVALTLSPALAALLLKSTHHEKKGFFRWFDNQF 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                             I  L    ++ +L    +          +        V +  
Sbjct: 520 ARMTAGYTRAVRLVIKRCIMGLVFFVALIVLSVLMVRSIPSAFLPPEDQGYLLGAVIMPD 579

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
             S   +  +       F   +             +            +           
Sbjct: 580 AASLDRTGAVSQRVTDYFKEREGVGSITTIDGYSLLDSQNKNNAGTFFVGLKGFDERYTR 639

Query: 654 TEIVGPKISRELIRK 668
             I        L+  
Sbjct: 640 ANIRTQNARSILLDA 654



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  I  + + I  T  F  L G   N+  +  ++  IG  V+D +VV + +    
Sbjct: 365 SLRATLIPIVAVPVSIVGTCMFMLLVGFSINMLTLFGMVLAIGIVVDDAIVVIENV--ER 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S ++   ++++E  G  V   +      +P+A  G   G +   FAI +A  +
Sbjct: 423 NMTVHKLSPKEAAKQAMDEVAGPVVAIVLVLCAVFVPVAFLGGITGQLYKQFAITIAISV 482

Query: 806 VVA 808
           V++
Sbjct: 483 VLS 485



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 72/201 (35%), Gaps = 9/201 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFA 693
             V   + E+              +   E    G  G++     +++++ +     KW   
Sbjct: 841  QVISTLEELAAQMPDGYDVAWSGEAFEERQSGGTSGLVFVFGLVMVFLILAAQYEKWTLP 900

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             G +  +   +   L    L G+  ++     +  L+  +  + +++++     +    T
Sbjct: 901  FGVLMAVPFALFGALLAIMLRGLSNDVYFQIGLTMLVALAAKNAILIFEFA---VLNRET 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAAS 810
              S  D    +  E L   V TS+A  +  +P+A+  G+      S    +  G++ A +
Sbjct: 958  GASVFDATMTAAEERLRPIVMTSLAFILGCVPLAIATGASANSRHSIGTGVIGGMLGATA 1017

Query: 811  SSIFIAAPILLFIYDWRAKNA 831
             ++F        +    +++ 
Sbjct: 1018 IAVFFIPMFYYLLESMSSRSK 1038


>gi|146302589|ref|YP_001197180.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Flavobacterium johnsoniae UW101]
 gi|146157007|gb|ABQ07861.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Flavobacterium johnsoniae UW101]
          Length = 1055

 Score =  175 bits (442), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/590 (10%), Positives = 160/590 (27%), Gaps = 41/590 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  +G+L  L        + +FP+  P               + +  D
Sbjct: 7   QRPVLSIVISLIIVFLGVLSVL-----NLPITQFPTISPPM-------------VNVTAD 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   + +     L   L    G+   +     +    I + F         A  V 
Sbjct: 49  YPGSNGELMIKAVVIPLERALNGVPGMKYMASDAGNDGEATIKVVFNLGTDPNQAAINVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V +KL     +  +  T E    ++          +             + ++  
Sbjct: 109 NRVASVTNKLPPLVIREGIKITREVPSMLMYVNLYSTDKNTDMKFLYNYADINVLSELKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P R+     +  ++       +        G    + S
Sbjct: 169 VNGIGSGDILGTREYAMRIWLKPDRMLAYKISADEIMEALSSQSLEASPGKTGESSGKRS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++     +                +    +                 +    ++
Sbjct: 229 QAFEYVLKYSGRFT-------------TKEQYENIVVKANPNGELLRLKDVAKVEFGSSM 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L        +       + N  IE        ++          +         
Sbjct: 276 YDIYSNLNGRPSAAIVLKQSFGSNANQVIEEVKAKLEKIKQRFPKGMDYEISYDVSKFLD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F+ +   +  ++   ++ ++++ T   ++    +L L +
Sbjct: 336 ASIEKVIHTLVEAFILVGLVVFLFLGDWRSTVIPAIAVPVSLVGTFVFMTFFDISLNLIT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +  +  +   S F +           I           +
Sbjct: 396 LFALVLAIGVVVDDAIVVIEAVHAKMEEEHLSPFKATKKAMHEIAGAIIAITFLMAAVFI 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-MKSIDINPLSRF 531
            + F  G      R F++TM  +I++S   A+++  A+   +++                
Sbjct: 456 PVAFMSGPVGVFYRQFSVTMATAIILSGIVALTLTPALCAMMLKNNHGQPKKKTPANRFI 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
               +   +   + +     I     +  + LL      + I        
Sbjct: 516 DAFNEKFNLAQGKYQNLLGKIVNRRVVTIVALLVFCAGTWLISSTVPSGF 565



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 75/239 (31%), Gaps = 11/239 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             LE +       ++       +         S    +V++ +  +               
Sbjct: 805  KLEKVYGLSEITRHNMYTSTQISGSPAAGYSSGTAIKVIQKIAAEKLPRGYDIDWAGISA 864

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                       + I   +I    + + +  +++ +   L  I +L   I        L G
Sbjct: 865  DEVAQGN----QAIWVFLICLGFVYLVLAAQYESFILPLSVIFSLPAGIFGAFLLLKLTG 920

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +E N+ A  A++ LIG    + V++ +     ++ +   +S      +         + T
Sbjct: 921  LENNIYAQVAMVMLIGLLGKNAVLIVEFA---IQRHAAGLSVLQAAMEGAKARFRPILMT 977

Query: 776  SMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            S A    +LP+    G   I   +     A G+++     +F+   +         K+ 
Sbjct: 978  SFAFIAGLLPLTFATGPGKIGNRTIGTAAAGGMLIGTICGVFVIPGLYFIFAKIAEKHK 1036



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 103/267 (38%), Gaps = 14/267 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +    + V AN   +L  ++   +      +     +        +  +        +V+
Sbjct: 245 EQYENIVVKANPNGELLRLKDVAKVEFGSSMYDIYSNLNGRPSAAIVLKQSFGSNANQVI 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWY 691
           E VK K+ +I           +   +S+ L   I K I  ++ + I + + +++    W 
Sbjct: 305 EEVKAKLEKIKQRFPKGMDYEISYDVSKFLDASIEKVIHTLVEAFILVGLVVFLFLGDWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +     + + +  T  F   F I  NL  + A++  IG  V+D +VV + +    K+ 
Sbjct: 365 STVIPAIAVPVSLVGTFVFMTFFDISLNLITLFALVLAIGVVVDDAIVVIEAVH--AKME 422

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI----GSFAIPMAFGIV 806
              +S      K+++E  G  +  ++   ++ + +   +    +      F++ MA  I+
Sbjct: 423 EEHLSPFKATKKAMHEIAGAII--AITFLMAAVFIPVAFMSGPVGVFYRQFSVTMATAII 480

Query: 807 VAASSSIFIAAPI-LLFIYDWRAKNAR 832
           ++   ++ +   +  + + +   +  +
Sbjct: 481 LSGIVALTLTPALCAMMLKNNHGQPKK 507


>gi|265754323|ref|ZP_06089512.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263235032|gb|EEZ20587.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1038

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 76/610 (12%), Positives = 175/610 (28%), Gaps = 46/610 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLFVVAGLVT-----LNILPVAQYPDITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++F      +     V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSASGAYSLTVTFEVGTDIDMATVMVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L    K   +    +    +++   + D +    +  +       +DQ+   
Sbjct: 111 RVSVALNSLPEAVKVQGVTVQKQSSNIVMMLTLSGDSI-YDGLYLTNYANLNLVDQLTRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-LRDS 236
                          +    +P  +R    T  ++       N        G       +
Sbjct: 170 PGVGAVNVMGAGDYSMRVWLNPETMRIRNITPQQVYSAIQSQNMEVSAGYVGQPIGSSAN 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  K  +S                +    I   E   +         I    A 
Sbjct: 230 NDFQYTLNVKGRLSTSE-------------EFGDIILRVEDQGKVLRLRDVAKIELGSAE 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +     +      A L           V         
Sbjct: 277 YGVVSKLKGQPTAGIAVYQLPGSNSLDVSKGVRARMAELAETFPAGVKYNVTLDTTDVVH 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F  +   +  L+   +I +++I TLA+++ LG ++   +
Sbjct: 337 DSIDEVMKTFVEAIVLVVLVIFFFLQSWRAVLIPCLTIPVSLIGTLAVMAALGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L I + VD  I+V E       + +     + +         I       +   I
Sbjct: 397 LFGLILAIAIVVDDAIVVTENATRILDEGKLDARAATEQAMGEITGPIVGVVLVLLAVFI 456

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPL 528
            T ++    G   + FA+T+  S +IS F ++++  A+   +      +K       + +
Sbjct: 457 PTTLISGISGQLYKQFALTIAASTVISGFNSLTLTPAVCALLLRPTPMHKARLFRWFDSM 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           + +       +++++ AR      S +       L+F    +  I  +      +    P
Sbjct: 517 NDWMQRVYDASVKWLLARPVIAIGSYIVISVIAILMFVKWPSTFIPEEDDGYFMIAIQLP 576

Query: 589 VDLSVVRSNL 598
              S+ R+ +
Sbjct: 577 AASSLERTQM 586



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 74/238 (31%), Gaps = 10/238 (4%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V +   +      + +E     D   +        +         S      +  + K 
Sbjct: 788  VVNSKGEMVPFSSFTQIEQKLGMDQINRYNMYSAASITITPAAGSSSGQAIEAVGSLIKN 847

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                       +      +         I+ ++++    L+       W   + A+  L 
Sbjct: 848  QLGGEFGYEWTSVAYQETQAGNTTTIILIMALLVAY---LVLAAQYESWTSPVAAVMGLP 904

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I   +    + G+  ++     ++ LI  S  + +++ +  R   K        R+  
Sbjct: 905  VAILGAMLGCWVMGVPVSIYTQIGIILLIALSAKNGILIVEFARDYRKA---GNPIREAA 961

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA-SSSIFI 815
             ++ +  L   + TS    + V+P+      G     +    + FG+ V    ++++I
Sbjct: 962  YEAGHVRLRPILMTSFTFVLGVMPLLFATGAGAGSRVALGAAVVFGMAVNTIFATVYI 1019



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/431 (11%), Positives = 135/431 (31%), Gaps = 16/431 (3%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           +  + +  +      + +   +  D ++         +    S+  ++ +          
Sbjct: 76  MLYMSSNSSASGAYSLTVTFEVGTDIDMATVMVQNRVSVALNSLPEAVKVQGVTVQKQSS 135

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA---MMIFIIRYKKMK 521
           +  +   ++   ++             +     +    A++++ A    M   +  + M+
Sbjct: 136 NIVMMLTLSGDSIYDGLYLTNYANLNLVDQLTRVPGVGAVNVMGAGDYSMRVWLNPETMR 195

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +I P   +  I               +G S          +              +++
Sbjct: 196 IRNITPQQVYSAIQSQNMEVSAGYVGQPIGSSANNDFQYTLNVKGRLSTSEEFGDIILRV 255

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + + L  V           +  +        +   Q    +S+  ++ +     +
Sbjct: 256 E-DQGKVLRLRDVAKIELGSAEYGVVSKLKGQPTAGIAVYQLPGSNSLDVSKGVRARMAE 314

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           + E  P     N  +    +  + I + +   + + + +++ I+     W   L    T+
Sbjct: 315 LAETFPAGVKYNVTLDTTDVVHDSIDEVMKTFVEAIVLVVLVIFFFLQSWRAVLIPCLTI 374

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISF 757
            + +  TL   A  G   N   +  ++  I   V+D +VV +   R+    KL       
Sbjct: 375 PVSLIGTLAVMAALGFSINTLTLFGLILAIAIVVDDAIVVTENATRILDEGKL-----DA 429

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIF 814
           R   ++++ E  G  V   +      +P   + G  G +   FA+ +A   V++  +S+ 
Sbjct: 430 RAATEQAMGEITGPIVGVVLVLLAVFIPTTLISGISGQLYKQFALTIAASTVISGFNSLT 489

Query: 815 IAAPILLFIYD 825
           +   +   +  
Sbjct: 490 LTPAVCALLLR 500


>gi|187735392|ref|YP_001877504.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425444|gb|ACD04723.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 1034

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/553 (12%), Positives = 154/553 (27%), Gaps = 42/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I  +GLL       P   + ++P   P               + L   
Sbjct: 7   RRPIFAWVVALLISLMGLLAI-----PSLPIAQYPDIAPPV-------------ITLRTT 48

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +      +   +    G+   S     +   +I  +F      +  A +V 
Sbjct: 49  YPGASARDTEEAVTAVIEKEINGAPGLMYMSATSSSDGAVEIAATFTQGTDPDIAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V S+L    ++  +           +   +    ++   E       + I ++  
Sbjct: 109 NRLKIVESRLPESVRREGVFVEKSSNNIQAMISLSSTGSLND-TELGEWASARIIPELKR 167

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP +L  L  T   +       +        G   + +S
Sbjct: 168 VKGVGRVELFGA-ETSMRIWPDPEKLEALGLTPTDIVNAVAAQSERIIIGDIGGAAVPES 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V                +      +                      +      
Sbjct: 227 APINAGV-------------VAEDAFRTPEEFASIALRTLSDGSSVKLGDVARVELGANS 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +   T+         L     P     +         
Sbjct: 274 YAFFSRCNGQTATGMAIKMAPGSNAVETMGLLKAKMDELSRDFPPGVSYQIPYETTHFVE 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F+ +   +  L+    + + ++ T A++ L G ++ + +
Sbjct: 334 ISIRKVISTLLEAVLLVFLVMFLFLQNFRATLIPTLVVPVALLGTFAVMWLSGFSINMLT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +      +      +    I       +   V
Sbjct: 394 MFGMVLSIGILVDDAIVVVENVERIMMEEGLDARRATVKAMKQIGGAIVGITAVLVAVFV 453

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FF    G   R FA+T+ +SI  S F A+S+  A+   +++   ++  +      +F
Sbjct: 454 PMAFFSGAVGNIYRQFAVTLIVSISFSAFLALSLTPALCAAMLKPSSVEHQEKKGFFGWF 513

Query: 533 LIPDCIAIQFMRA 545
                 +      
Sbjct: 514 NRTIHRSTDRYGR 526



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 82/242 (33%), Gaps = 6/242 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +     V L  V              +        +        ++V    +L+    +
Sbjct: 252 TLSDGSSVKLGDVARVELGANSYAFFSRCNGQTATGMAIKMAPGSNAVETMGLLKAKMDE 311

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           ++   P                  IRK I  ++ + + + + +++  + +   L     +
Sbjct: 312 LSRDFPPGVSYQIPYETTHFVEISIRKVISTLLEAVLLVFLVMFLFLQNFRATLIPTLVV 371

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T     L G   N+  +  ++  IG  V+D +VV + +     +    +  R  
Sbjct: 372 PVALLGTFAVMWLSGFSINMLTMFGMVLSIGILVDDAIVVVENV--ERIMMEEGLDARRA 429

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             K++ +  G  V  +       +PMA + G+V      FA+ +   I  +A  ++ +  
Sbjct: 430 TVKAMKQIGGAIVGITAVLVAVFVPMAFFSGAVGNIYRQFAVTLIVSISFSAFLALSLTP 489

Query: 818 PI 819
            +
Sbjct: 490 AL 491



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 74/235 (31%), Gaps = 8/235 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L S    D +       +          G S       + +         L      E  
Sbjct: 795  LSSFVRLDWTAGPPQLTRYNNYPSFTINGSSAPGKSSGDAMNALEQITASLPQGVGFEWT 854

Query: 658  GPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
            G     +L   +  +   +S + + + +   ++ W   L  I  + L +   L    L  
Sbjct: 855  GQSYEEKLAGSQATLLFGLSILIVFLVLAALYESWSIPLAVILVVPLGLLGALMAVFLRD 914

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +  ++     ++T IG S  + +++ +  R+    +   ++  +    +    L   + T
Sbjct: 915  MPNDIYFKVGLITTIGLSAKNAILIVEVAREF---HREGMNAAEAAVAAAKLRLRPILMT 971

Query: 776  SMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            S+A    V+P+            +    +  GI+ A   +IF+           R
Sbjct: 972  SLAFGAGVIPLAFAHGAAAGAQRAVGTGVLGGIITATLLAIFLVPLFFRLTAGKR 1026


>gi|218261699|ref|ZP_03476434.1| hypothetical protein PRABACTJOHN_02102 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223833|gb|EEC96483.1| hypothetical protein PRABACTJOHN_02102 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1040

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 77/687 (11%), Positives = 181/687 (26%), Gaps = 46/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GL+      L    + ++P   P               + +    
Sbjct: 8   RPIFATVLALILVVAGLVT-----LHILPIAQYPEITPPT-------------VQVSAFY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +     V  
Sbjct: 50  PGADAETVAQTVGLPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVMVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        + T  +    +++   +        +  S        D++   
Sbjct: 110 RVSIAQSSLPEAVIVQGITTKKQSSNIVMMLTLSSRDSTYSGLYLSNYASLNMTDELTRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+ +R    T   +       N        G    +  +
Sbjct: 170 PGVGSVSVMGAGSYSMRIWLDPNAMRIRNLTPDMIFQAISTQNTQVSAGYVGQPIAKADN 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  ++                +    I   E G +         I    +  
Sbjct: 230 PFQYTLTVKGRLT-------------TPEEFGDIILRTEEGGKILRLKDVARIELGSSSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +        L A      +  V          
Sbjct: 277 NVTSKLKGQPSAAIAIYQLPGSNSLEVAKGVREKMEQLAANLPEGVVYDVTLDTTQVINA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  ++   +I +++I TLA++S LG ++   ++
Sbjct: 337 SIDEVLVTFLETTALVILVIFLFLQNFRAVIIPCITIPVSLIGTLAVMSALGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L I + VD  I+V E           +   ++          I    +  L   + 
Sbjct: 397 FGLILAIAIVVDDAIVVVENSSRLMDTGKYTAREAVTEAMGEIVGPIVGVVLVLLAVFIP 456

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             F  G +    + FA+T+  + ++S F ++++  A+    ++  K     +        
Sbjct: 457 TTFISGISGQLYKQFALTIAAATVLSGFNSLTLTPALCALFLQANKEPKFFVFKAFNKVF 516

Query: 534 IPDCIAIQFMRARFWG------VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                    +  R         V   I+  I  +  +         +  G   +      
Sbjct: 517 GKTQKIYDDIVGRMLKSPLVTMVIFGIITIIAIVMFMRWPTTFIPEEDDGYFLVSTQLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L+   +  + +     S+                 G+         ++K        
Sbjct: 577 AASLNRTEAVGKQIDKILDSYPEVKTYIGVNGFSIMGGGELSNAGTYFVILKNWNERRGK 636

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             T         + +  +    I  ++
Sbjct: 637 EHTASAVVNRFNREAYGIQEAQIFAMV 663


>gi|206560142|ref|YP_002230906.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
 gi|198036183|emb|CAR52078.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
          Length = 1057

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 144/520 (27%), Gaps = 40/520 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   G+L       PQ  + ++P   P               +V+    
Sbjct: 8   RPVFAWIVALAIVVAGMLAI-----PQLPIAQYPRLAPP-------------RVVITAAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG--IGVFSMRQIQNK--ITLSFADSRFKENIADKVTL 117
                  +       +   L      +   +         I ++F+     +     V  
Sbjct: 50  PGASTETVDGDVGSIIEESLDGADGLLYYATSSDGHGNLEIDVTFSPGTDPDIALVDVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L     +  +         ++L           + +    + R  + ++  +
Sbjct: 110 RLKQVEPRLPQQVVQQGIGVFKAANTFLMLVTLTSTDGTRDSAQLGDYLNRYVLRELKRA 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP++LR+       +     + N +      G        
Sbjct: 170 PGVGAAELWDAGE-ALRVWLDPNKLREYDLGADDVIAAIGVQNATVTAGAIGDAPFERGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K +++                +    +   +             +       
Sbjct: 229 QLTATIVVKGQLT-------------SPEEFGQIVLKSKQDGSVVRVADVARVEIGRDDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T        A L     P     +          
Sbjct: 276 SFYSRLNGRPAATVGIQLGPRGNALETSNAIRARLAELSRVLPPGVAMEIPFDGAHFVTI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV  V+++ +   ++ LV    I + ++     +   G ++ + ++
Sbjct: 336 AIREVVLTLVEAVVLVFCVMWLFLRDLRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           +G+VL IG+ VD  I+V E +     +  S   +      R    I           V +
Sbjct: 396 SGLVLAIGILVDDAIVVVESVHRVMEEGVSPRDATRRAMKRIGGAIVGVTAVLTAVFVPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            FF G      R FA+ M  S+L+S F A+S+  A+   +
Sbjct: 456 AFFPGAVGGIYRQFAVAMIASMLVSSFMALSLTPALCANL 495



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/194 (14%), Positives = 79/194 (40%), Gaps = 7/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
             +  +     +++ ++P          G       IR+ ++ ++ + + +   +W+  +
Sbjct: 301 ETSNAIRARLAELSRVLPPGVAMEIPFDGAHFVTIAIREVVLTLVEAVVLVFCVMWLFLR 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              + L     + + +         FG+  N+  ++ ++  IG  V+D +VV + +    
Sbjct: 361 DLRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTMSGLVLAIGILVDDAIVVVESVH--- 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           ++    +S RD   +++    G  V  +       +PMA +    G +   FA+ M   +
Sbjct: 418 RVMEEGVSPRDATRRAMKRIGGAIVGVTAVLTAVFVPMAFFPGAVGGIYRQFAVAMIASM 477

Query: 806 VVAASSSIFIAAPI 819
           +V++  ++ +   +
Sbjct: 478 LVSSFMALSLTPAL 491



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 82/252 (32%), Gaps = 16/252 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS + +   ++    ++  N     +   R         A   +  +      
Sbjct: 794  RTGDMVPLSAIAAPHWTVGPVMLNRYNGYPSLDISGRAATGTSSGAAMAEMERLAGALPV 853

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I         E         L+      V +S +A+ + +   ++ W   L  +T + L
Sbjct: 854  GIGFDWVDAAREEQVAARQTPLL------VGLSVLAVFMALAALYESWTVPLSVLTIVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +      G+  ++     ++T++G +  + +++    R    L  + +  R  + 
Sbjct: 908  GMIGAIAAALARGMPNDVYFKVGMITVVGLAAKNAILIVQYARD---LAGSGVPLRQAVV 964

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA-- 817
             +        + TSMA  + V+P+ +    G     S       G++ A    +  A   
Sbjct: 965  DAAAARFRPIMMTSMAFLLGVVPLVLATGAGAESRRSIGTGAFGGVLAATMFGLVFAPVA 1024

Query: 818  -PILLFIYDWRA 828
              +++ +     
Sbjct: 1025 FRVVVSVGRRGR 1036


>gi|91774729|ref|YP_544485.1| hydrophobe/amphiphile efflux-1 HAE1 [Methylobacillus flagellatus
           KT]
 gi|91708716|gb|ABE48644.1| Hydrophobe/amphiphile efflux-1 HAE1 [Methylobacillus flagellatus
           KT]
          Length = 1059

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/541 (13%), Positives = 152/541 (28%), Gaps = 32/541 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  +I  +G L             +FP   P   I           L     
Sbjct: 7   KRPVMAIVLSLLIVFMGFLSI-----KTLPTSQFPDIAPPRVI---------VSLAYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQ 120
             D +     +  +   + +      V       +  I + F            V   + 
Sbjct: 53  SADVLVQSSLITIERAINGVPGMKYIVSDATSAGEATIQVIFDLGVDPNQAMINVKTRID 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L    +   +V    +   ++          +             I +I      
Sbjct: 113 QVMSRLPELVQMEGVVVERVQPSMLMYINLYSKDKHADEKFLFNYANVNIIPEIQRVNGI 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +    +P R+R    +T ++       +   +    G      +   +
Sbjct: 173 AQAKILGSRQYAMRIWLNPERMRAYNVSTEEVMKAINSQSVIGRPGRLGQSSGITAQSKE 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y++  +                 K  +    I                 +          
Sbjct: 233 YVLIYQGR-------------YNKPEQYADIIIRANSEGEILHLKDIAKVELNSEFYDIY 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      +       +    IE        L+A         V          S  
Sbjct: 280 SNKDGYPSAAIVLKQNYGSNATEVIEHVKERMEELKASFPEGMDYEVNYDVSKFLDASIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+F+ +   +  L+   ++ +++I T  ++ + G ++ L ++  +
Sbjct: 340 KVIHTLIEAFVLVALVVFIFLGDWRSTLIPILAVPVSLIGTFFVMQMFGISINLITLFAL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD+ I+V E +  +      + + +           I    +      V + F
Sbjct: 400 VLAIGIVVDNAIVVVEAVHAKMETEHLTPYKATQKVLGEIGGAIVAITLVMTAVFVPVAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G      R F+ITM  SI+IS   A+S+   +   +++    +     P+S F    +
Sbjct: 460 MTGPVGVFYRQFSITMAASIIISGVVALSLTPVLCAMLLKNNHGQPKRKTPVSLFINAFN 519

Query: 537 C 537
            
Sbjct: 520 H 520



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 102/265 (38%), Gaps = 9/265 (3%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                   +    + + AN   ++  ++   +     +      + +      +  +   
Sbjct: 237 YQGRYNKPEQYADIIIRANSEGEILHLKDIAKVELNSEFYDIYSNKDGYPSAAIVLKQNY 296

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYI 684
               T V+E VK+++ E+           V   +S+ L   I K I  +I + + + + +
Sbjct: 297 GSNATEVIEHVKERMEELKASFPEGMDYEVNYDVSKFLDASIEKVIHTLIEAFVLVALVV 356

Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +I    W   L  I  + + +  T     +FGI  NL  + A++  IG  V++ +VV + 
Sbjct: 357 FIFLGDWRSTLIPILAVPVSLIGTFFVMQMFGISINLITLFALVLAIGIVVDNAIVVVEA 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           +    K+ T  ++      K + E  G  V  ++      +P+A   G V      F+I 
Sbjct: 417 VH--AKMETEHLTPYKATQKVLGEIGGAIVAITLVMTAVFVPVAFMTGPVGVFYRQFSIT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           MA  I+++   ++ +   +   +  
Sbjct: 475 MAASIIISGVVALSLTPVLCAMLLK 499



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 78/245 (31%), Gaps = 10/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +     Q  +    + +          A     +   K + ++  
Sbjct: 788  YVKNEEGEMVPYSAFMKLKKMQGPNEITRYNLYNSATIRAMPADGYTTDDAIKAVEQVAK 847

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIYIWI---RFKWYFALGAITTLILD 703
             +     +I    +S +   +G   +II   + + +Y+ +      +   L  + +L   
Sbjct: 848  ATLPHGYDIGWEGLSFDEANRGNEAIIIFGVVLVFVYMVLAAQYESFILPLVVVLSLPAG 907

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +  +       G+  ++ A   ++ L+G    + V++ +     ++ +   +S +D   +
Sbjct: 908  VFGSFFMLKALGLANDIYAQVGLVMLVGLLGKNAVLIVE---YAVQKHAQGLSIKDAAIE 964

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            S        + TS A    ++P+ V    G     +       G++      + +   + 
Sbjct: 965  SARVRFRPILMTSFAFIAGLIPLVVATGAGAVGNRTIGSSALGGMLFGTIFGVILIPGLY 1024

Query: 821  LFIYD 825
                 
Sbjct: 1025 YIFAK 1029


>gi|254699613|ref|ZP_05161441.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 5
           str. 513]
 gi|261750072|ref|ZP_05993781.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 5
           str. 513]
 gi|261739825|gb|EEY27751.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 5
           str. 513]
          Length = 1074

 Score =  175 bits (442), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNAQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLTLTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|313201428|ref|YP_004040086.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylovorus sp. MP688]
 gi|312440744|gb|ADQ84850.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylovorus sp. MP688]
          Length = 1037

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/542 (13%), Positives = 159/542 (29%), Gaps = 32/542 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G   A+     +  + ++P   P   I                  
Sbjct: 8   RPIFASVLSIIIVLAGFAAAM-----KLPIAQYPQIAPPTVI---------VTATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + ++  +    +E  S ++       S        IT +F      +     V+  +  
Sbjct: 54  AETLSKTVAAPIEEQLSGVEGLLYFQSSADSSGTLTITATFETGTEVDQATFNVSNRVNI 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  +V        ++             +  S       +D++   +   
Sbjct: 114 ALPRLPEDVRRTGVVVQKRSNDILMALMLISPSKKYDPLFLSNYATLNVVDELKRIKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P R+ QL  TT  +S      N        G   +       Y
Sbjct: 174 DVTIFGSQDYSMRIWLKPDRMAQLGVTTTDISTAIQAQNAQYAAGKIGQEPVVGQQQLVY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +              +  +    I                 I     +     
Sbjct: 234 TVTAKGRL-------------VEPEQFADIIVRSNGPRGTLRLKDVATIELGAQMYNVRT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +   T          L+          +          S   
Sbjct: 281 SLDGQPGVGIPVFLQTGANALDTANAIKARMEELKQRFPEGVDYAIPYDTSDFVKASIEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  L+   ++ ++++ T A L + G ++   ++  +V
Sbjct: 341 VVKTLGEAMVLVVLVVFLFLQNWRATLIPIIAVPISLVGTFAGLWIFGFSINTLTLFAMV 400

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E I    + +  S   +      +    +    +      V + F 
Sbjct: 401 LSIGIVVDDAIVVLENIERLMSEEKLSPVNAAIKSMQQVSGAVVAIVLVLCAVFVPVAFM 460

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FA+T+ ++++IS   A+++  A+   I++    +S    P +R F     
Sbjct: 461 GGIAGELYRQFAVTVAVAVVISGIVALTLTPALCSLILKSVHEESRFFRPFNRGFEKLTN 520

Query: 538 IA 539
             
Sbjct: 521 FY 522



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 8/221 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               L       G     +     + +KI         Q T        +      I    
Sbjct: 811  NGLLAAKVLAGGAPGVSSGDAIKLVEKIAAQSLPDGYQMTWTGQAYQEKRTGSAAIYAFS 870

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             + I + + +  +F+ W   L  I  +   +   L    + G+  ++     ++TL+G +
Sbjct: 871  FAIIMVFLILAAQFETWALPLAVIMAVPFALAGALLAVLVRGMPNDIYFQIGLVTLVGLA 930

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +      +     +       ++        V TSMA  + ++P+ V+    
Sbjct: 931  AKNAILIVEFA---SQKLEEGLPVAQAAVEAARLRFRPIVMTSMAFVLGIVPL-VFASGA 986

Query: 794  IGSFAIPMAFGIVVAASSSIFIAA---PILLFIYDWRAKNA 831
              +    M  G+      + F+A    P+         K  
Sbjct: 987  GAAARRSMGTGVFGGMLLATFVATVFIPLFFTWLTGTQKRN 1027



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L  I  + + +  T     +FG   N   + A++  IG  V+D +VV + +     
Sbjct: 363 WRATLIPIIAVPISLVGTFAGLWIFGFSINTLTLFAMVLSIGIVVDDAIVVLENI--ERL 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           +    +S  +   KS+ +  G  V   +      +P+A  GG
Sbjct: 421 MSEEKLSPVNAAIKSMQQVSGAVVAIVLVLCAVFVPVAFMGG 462


>gi|154492889|ref|ZP_02032515.1| hypothetical protein PARMER_02528 [Parabacteroides merdae ATCC
           43184]
 gi|154087194|gb|EDN86239.1| hypothetical protein PARMER_02528 [Parabacteroides merdae ATCC
           43184]
          Length = 1040

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 74/687 (10%), Positives = 177/687 (25%), Gaps = 46/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GL+      L    + ++P   P               + +    
Sbjct: 8   RPIFATVLALILVVAGLVT-----LHILPIAQYPEITPPT-------------VQVSAFY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +     V  
Sbjct: 50  PGADAETVAQTVGLPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVMVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        + T  +    +++   +        +  S        D++   
Sbjct: 110 RVSIAQSSLPEAVIVQGITTKKQSSNIVMMLTLSSRDSTYSGLYLSNYASLNMTDELTRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+ +R    T   +       N        G    +  +
Sbjct: 170 PGVGSVSVMGAGSYSMRIWLDPNAMRIRNLTPDMIFQAISTQNTQVSAGYVGQPIAKADN 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  ++                +    I   E G +         I    +  
Sbjct: 230 PFQYTLTVKGRLT-------------TPEEFGNIILRTEEGGKILRLKDVARIELGSSSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +        L        +  V          
Sbjct: 277 NVTSKLKGQPSAAIAIYQLPGSNSLEVAKGVRAKMEQLAGNLPEGVVYDVTLDTTQVINA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  ++   +I +++I TLA++S LG ++   ++
Sbjct: 337 SIDEVLVTFLETTALVILVIFLFLQNFRAVIIPCITIPVSLIGTLAVMSALGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L I + VD  I+V E           +   ++          I    +  L   + 
Sbjct: 397 FGLILAIAIVVDDAIVVVENSSRLMDTGKYTAREAVTEAMGEIVGPIVGVVLVLLAVFIP 456

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             F  G +    + FA+T+  + ++S F ++++  A+    ++  K     +        
Sbjct: 457 TTFISGISGQLYKQFALTIAAATVLSGFNSLTLTPALCALFLQANKEPKFFVFKAFNKVF 516

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI------DFKGGIQLGVLANR 587
                    +  R        +     I  +               +  G   +      
Sbjct: 517 GKTQKIYDDIVGRMLKNPFVTMVIFGIITAIAIVMFMRWPTTFIPEEDDGYFLISTQLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L+   +  + +     S+                 G+         ++K        
Sbjct: 577 AASLNRTEAVGKQIDKILDSYPEIKTYIGVNGFSIMGGGELSNAGTYFVILKNWNERKGK 636

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
             T         + +  +    I  ++
Sbjct: 637 EHTASAVVNRFNREAYGIQEAQIFAMV 663


>gi|108761482|ref|YP_632083.1| AcrB/AcrD/AcrF family efflux transporter inner membrane protein
           [Myxococcus xanthus DK 1622]
 gi|108465362|gb|ABF90547.1| efflux transporter, AcrB/AcrD/AcrF family, inner membrane component
           [Myxococcus xanthus DK 1622]
          Length = 1041

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/598 (11%), Positives = 179/598 (29%), Gaps = 44/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++ +     GL+ A      +  + +FP       I+          +  E  
Sbjct: 9   KKPVLAWMIMAATIVFGLVAA-----QRIGISQFPDVDFPT-IN--------ISVTWEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +  + +E  + ++       + RQ    IT+    SR  +     V   +  
Sbjct: 55  NPEAVESDVLEFIEEAVTQVEGVTAINSTARQGGGNITVELDLSRNVDLALQDVQTKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L +D    ++  +  ++  I+    +         + +     +  +++       
Sbjct: 115 VQRRLPLDIDPPIISKSNPEDQPILWVGVSGPFSQQVVSDYARY---RVKEKLQTIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    D  +L  L  T   +S      +          +          
Sbjct: 172 EVQLGGMLERNVRIWVDAQKLDALGLTVTDVSAALQREHVELPAGRIETQGR-------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E  V + G  L+  T             I   E G    +      +      V    
Sbjct: 224 --EVNVRVMGEALDLETLR----------RIIVREQGGFPVYLKDVALVEDGFEDVRRMA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +   +     +        ++          +   +      S   
Sbjct: 272 RINGEPAQGLGIKKQRGANAVAVAQGIRAELDKMQKDLPEGMQLGINFDSTQFIEESVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   L   V ++ +      +    +I ++++ T+A++  LG TL   ++ G+ 
Sbjct: 332 IEFELMLACILTAFVCWVFLGSISSTMNVVLAIPMSLLGTVAVIYFLGFTLNTFTLLGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+V E I   + + +    +   G +        +    +   + + F  
Sbjct: 392 LAVGIVVDDAIMVLENIYRHSEEGKDRVRAAREGTAEITFAALAATAAVVAIFLPVVFMS 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRA----MMIFIIRYKKMKSIDINPLSRFFLI 534
           G   +    F +T+ +++L+S   AI++  A    ++      +    + ++        
Sbjct: 452 GVIGKYFLQFGVTLCVAVLLSYVEAITLAPARCAQLLKTSREGRSRIGVWVDRGFEKLER 511

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                + +   R W V  + +    S   +F       +  +   +L V     V  +
Sbjct: 512 VYARTLAWGLKRPWWVLGAAVVLTASSVFVFRALPGEFVPSQDQSRLLVRMQTAVGSN 569



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 61/166 (36%), Gaps = 11/166 (6%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAV 726
               + +      + +  +F  +   +      IL ++     FALF  G   N+ ++  +
Sbjct: 850  FFALFLGIGVAYMVLGAQFNSFLHPV--TVLTILPLSVAGAAFALFATGTTLNIFSMIGL 907

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            L L+G    + +++ D     ++           + ++    L   + TS A  ++ +P 
Sbjct: 908  LLLMGIVKKNSIILVD---YALQERERGADAMQAMLRAGPVRLRPILMTSTATMMAAVPA 964

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            A+    G       +I +  G+ V+   S+ +     +     + +
Sbjct: 965  ALALGAGSETRAPMSIAVLGGLSVSTVLSLLVVPAFYVVADRMKTR 1010



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 74/227 (32%), Gaps = 8/227 (3%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 L   + +  ++VA  + +     K+ + +P            +   E + +   
Sbjct: 275 GEPAQGLGIKKQRGANAVAVAQGIRAELDKMQKDLPEGMQLGINFDSTQFIEESVHEIEF 334

Query: 672 GVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++++ I      W+        +  +  + + +  T+      G   N   +  +   +
Sbjct: 335 ELMLACILTAFVCWVFLGSISSTMNVVLAIPMSLLGTVAVIYFLGFTLNTFTLLGLALAV 394

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D ++V + +    +             +   E    ++  + A     LP+    
Sbjct: 395 GIVVDDAIMVLENI---YRHSEEGKDRVRAAREGTAEITFAALAATAAVVAIFLPVVFMS 451

Query: 791 GSVIG---SFAIPMAFGIVVAASSSIFIAAP-ILLFIYDWRAKNARI 833
           G +      F + +   ++++   +I +A       +   R   +RI
Sbjct: 452 GVIGKYFLQFGVTLCVAVLLSYVEAITLAPARCAQLLKTSREGRSRI 498


>gi|33240218|ref|NP_875160.1| preprotein translocase subunit SecF [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237745|gb|AAP99812.1| Preprotein translocase subunit SecF [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 321

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 140/312 (44%), Gaps = 12/312 (3%)

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF---THGLNYGID 574
           K   ++  N    + +    + I F+   F     SI F +             L    D
Sbjct: 11  KYTFNVSRNRSKVWLISGFAVLISFLGFFFSWTNQSIGFPLRPGFDFTGGTQIILERKCD 70

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +      +  +   + +   +   S ++ D   Q  DG K+ L+R          +   
Sbjct: 71  SECNKITTINISEAFNNAKFSNQETSQKLFDARIQFLDGYKSLLIRSPELSPSESKEVIE 130

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
                    E       Q+ E +GP +  +L++  ++ ++++   + IYI IRF   F+L
Sbjct: 131 SIEFVAGPLEDGG----QSVESIGPTLGAKLLQTTLISLLVAFSCVAIYISIRFDRMFSL 186

Query: 695 GAITTLILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+  L  D+    G F+  GI    E N     A+LT+ GYSVND VVV+DR+R+ +  
Sbjct: 187 YALLALFHDVLIVCGVFSWLGIINEVEVNSLFAVALLTIAGYSVNDTVVVFDRIRE-INK 245

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
             + ++F+  +D +++ TL R++YTS    + ++ +  +GG+ +  FAI +A G+VV + 
Sbjct: 246 QESRMNFKQKVDFAVSATLTRTLYTSGTTLLPLIALIFFGGTTLYWFAIALALGVVVGSW 305

Query: 811 SSIFIAAPILLF 822
           SSI +   +L  
Sbjct: 306 SSIALVPSLLTL 317


>gi|53719416|ref|YP_108402.1| multidrug efflux protein [Burkholderia pseudomallei K96243]
 gi|76811441|ref|YP_333453.1| multidrug efflux protein [Burkholderia pseudomallei 1710b]
 gi|126438721|ref|YP_001058925.1| multidrug efflux protein [Burkholderia pseudomallei 668]
 gi|126454286|ref|YP_001066169.1| multidrug efflux protein [Burkholderia pseudomallei 1106a]
 gi|167815873|ref|ZP_02447553.1| multidrug efflux protein [Burkholderia pseudomallei 91]
 gi|167824245|ref|ZP_02455716.1| multidrug efflux protein [Burkholderia pseudomallei 9]
 gi|167845791|ref|ZP_02471299.1| multidrug efflux protein [Burkholderia pseudomallei B7210]
 gi|167894362|ref|ZP_02481764.1| multidrug efflux protein [Burkholderia pseudomallei 7894]
 gi|167902763|ref|ZP_02489968.1| multidrug efflux protein [Burkholderia pseudomallei NCTC 13177]
 gi|167911008|ref|ZP_02498099.1| multidrug efflux protein [Burkholderia pseudomallei 112]
 gi|167919023|ref|ZP_02506114.1| multidrug efflux protein [Burkholderia pseudomallei BCC215]
 gi|217421591|ref|ZP_03453095.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 576]
 gi|226196300|ref|ZP_03791882.1| multidrug efflux pump AmrB [Burkholderia pseudomallei Pakistan 9]
 gi|237812182|ref|YP_002896633.1| acriflavine resistance protein B [Burkholderia pseudomallei
           MSHR346]
 gi|242317789|ref|ZP_04816805.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 1106b]
 gi|254197728|ref|ZP_04904150.1| multidrug efflux pump AmrB [Burkholderia pseudomallei S13]
 gi|254259937|ref|ZP_04950991.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 1710a]
 gi|254297699|ref|ZP_04965152.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 406e]
 gi|52209830|emb|CAH35802.1| multidrug efflux system transporter protein AmrB [Burkholderia
           pseudomallei K96243]
 gi|76580894|gb|ABA50369.1| multidrug efflux system transporter protein AmrB [Burkholderia
           pseudomallei 1710b]
 gi|126218214|gb|ABN81720.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 668]
 gi|126227928|gb|ABN91468.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 1106a]
 gi|157807171|gb|EDO84341.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 406e]
 gi|169654469|gb|EDS87162.1| multidrug efflux pump AmrB [Burkholderia pseudomallei S13]
 gi|217395333|gb|EEC35351.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 576]
 gi|225931517|gb|EEH27522.1| multidrug efflux pump AmrB [Burkholderia pseudomallei Pakistan 9]
 gi|237506460|gb|ACQ98778.1| acriflavine resistance protein B [Burkholderia pseudomallei
           MSHR346]
 gi|242141028|gb|EES27430.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 1106b]
 gi|254218626|gb|EET08010.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 1710a]
          Length = 1043

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/622 (11%), Positives = 171/622 (27%), Gaps = 41/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+            + ++P   P   +SL        +       
Sbjct: 8   RPVFAWVISLFIMLGGIFAI-----RALPVAQYPDIAPP-VVSL--------YATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +        +    Q  ++L+F      +  A  V   L+ V
Sbjct: 54  AQVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      + + ++     +      +E         +  +   E   +
Sbjct: 114 EARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASANVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     ++                                +      I            
Sbjct: 233 VLADAPLT-------------TPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSF 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L     P     +          S S  
Sbjct: 280 VNGKTATGMGIKLAPGSNAVATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+F+ +   +  L+    + + ++ T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLVEAGVLVFAVMFLFMQNFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529
              G   R FA  + +SI  S F A+S+  A+   +++                +     
Sbjct: 460 GAVGNIYRQFAFALAVSIGFSAFLALSLTPALCATLLKPVADDHHEKDGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R   W V    L +  ++ +          + +G   + V+  +  
Sbjct: 520 STHRYTRRVGRVLERPLRWLVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNF 611
            L+    ++  ++    +    
Sbjct: 580 PLAETMQSVRRVEEYVRTHSPS 601



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 71/203 (34%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +E + K     V       T         +++   +   ++    M +++ 
Sbjct: 300 ATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +   +   K++ +  G  V  ++      +PMA +GG+V      FA  +A
Sbjct: 416 -ERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 67/195 (34%), Gaps = 9/195 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFA 693
                 I  I              +   E +      ++ +   +++++ +      W   
Sbjct: 833  EAMAAIERIASTLPAGTGYAWSGQSYEERLSGAQAPMLFALSVLVVFLALAALYESWSIP 892

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   +    L G+  ++     ++  IG S  + +++ +  +    L   
Sbjct: 893  FAVMLVVPLGVIGAVAGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKD---LVAQ 949

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAAS 810
             +S  D   ++    L   V TS+A  + VLP+    G +     AI      G++ A  
Sbjct: 950  RMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFATGAASGAQIAIGTGVLGGVISATL 1009

Query: 811  SSIFIAAPILLFIYD 825
             +IF+     + +  
Sbjct: 1010 FAIFLVPLFFVCVGR 1024


>gi|149908462|ref|ZP_01897125.1| putative protein-export membrane protein SecF [Moritella sp. PE36]
 gi|149808625|gb|EDM68560.1| putative protein-export membrane protein SecF [Moritella sp. PE36]
          Length = 313

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 78/300 (26%), Positives = 151/300 (50%), Gaps = 6/300 (2%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +             +    + R+    IS++F + +I  +  +GLN+G+DF GG+   V 
Sbjct: 1   MMMTININNSNKNNSNNHSKLRYISSAISVIFMLVAIVFISVNGLNWGLDFTGGVITEVQ 60

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +  + +S +   L++     +S         +++R                 + + +  
Sbjct: 61  LDPSITMSEISPLLQAALNQHVSVIEGGDVGRWILRYAEPAAGMNIPD-----ITQVLAP 115

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           +     + NT IVG +I +EL  +G + +++S + ++ Y+  RF+W  A GA+  L+ D+
Sbjct: 116 LATNIQVLNTSIVGSQIGQELAEQGGLALLVSMLCIMAYLSYRFEWRLASGALFALVHDV 175

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              LG FA   +EFNLT  AA+L +IGYS+ND +++ DR+R+ + L  T ++  D+ +++
Sbjct: 176 LFVLGVFAALQLEFNLTVFAAILAIIGYSLNDSIIIGDRIRELLILKPT-LAIADVNNQA 234

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           I+ T+ R++ TS    ++V  + + GG  +  F+I M  G++V   SSI +A  +     
Sbjct: 235 ISATISRTLVTSGTTLMTVSALWLLGGGPLAGFSIAMFVGLIVGTWSSIAVATTLPELWG 294


>gi|237725157|ref|ZP_04555638.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|229436423|gb|EEO46500.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
          Length = 1038

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 76/610 (12%), Positives = 175/610 (28%), Gaps = 46/610 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    GL+      L    + ++P   P               + +    
Sbjct: 9   RPIFATVLALLFVVAGLVT-----LNILPVAQYPDITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++F      +     V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSASGAYSLTVTFEVGTDIDMATVMVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L    K   +    +    +++   + D +    +  +       +DQ+   
Sbjct: 111 RVSVALNSLPEAVKVQGVTVQKQSSNIVMMLTLSGDSI-YDGLYLTNYANLNLVDQLTRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-LRDS 236
                          +    +P  +R    T  ++       N        G       +
Sbjct: 170 PGVGAVNVMGAGDYSMRVWLNPETMRIRNITPQQVYSAIQSQNMEVSAGYVGQPIGSSAN 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  K  +S                +    I   E   +         I    A 
Sbjct: 230 NDFQYTLNVKGRLSTSE-------------EFGDIILRVEDQGKVLRLRDVAKIELGSAE 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +     +      A L           V         
Sbjct: 277 YGVVSKLKGQPTAGIAVYQLPGSNSLDVSKGVRARMAELAETFPAGVKYNVTLDTTDVVH 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F  +   +  L+   +I +++I TLA+++ LG ++   +
Sbjct: 337 DSIDEVMKTFVEAIVLVVLVIFFFLQSWRAVLIPCLTIPVSLIGTLAVMAALGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L I + VD  I+V E       + +     + +         I       +   I
Sbjct: 397 LFGLILAIAIVVDDAIVVTENATRILDEGKLDARAATEQAMGEITGPIVGVVLVLLAVFI 456

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPL 528
            T ++    G   + FA+T+  S +IS F ++++  A+   +      +K       + +
Sbjct: 457 PTTLISGISGQLYKQFALTIAASTVISGFNSLTLTPAVCALLLRPTPTHKARLFRWFDSM 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           + +       +++++ AR      S +       L+F    +  I  +      +    P
Sbjct: 517 NDWMQRVYDASVKWLLARPVIAIGSYIVISVIAILMFVKWPSTFIPEEDDGYFMIAIQLP 576

Query: 589 VDLSVVRSNL 598
              S+ R+ +
Sbjct: 577 AASSLERTQM 586



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 74/238 (31%), Gaps = 10/238 (4%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V +   +      + +E     D   +        +         S      +  + K 
Sbjct: 788  VVNSKGEMVPFSSFTQIEQKLGMDQINRYNMYSAASITITPAAGSSSGQAIEAVGSLIKN 847

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                       +      +         I+ ++++    L+       W   + A+  L 
Sbjct: 848  QLGGEFGYEWTSVAYQETQAGNTTTIILIMALLVAY---LVLAAQYESWTSPVAAVMGLP 904

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I   +    + G+  ++     ++ LI  S  + +++ +  R   K        R+  
Sbjct: 905  VAILGAMLGCWVMGVPVSIYTQIGIILLIALSAKNGILIVEFARDYRKA---GNPIREAA 961

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA-SSSIFI 815
             ++ +  L   + TS    + V+P+      G     +    + FG+ V    ++++I
Sbjct: 962  YEAGHVRLRPILMTSFTFVLGVMPLLFATGAGAGSRVALGAAVVFGMAVNTIFATVYI 1019



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/431 (11%), Positives = 135/431 (31%), Gaps = 16/431 (3%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           +  + +  +      + +   +  D ++         +    S+  ++ +          
Sbjct: 76  MLYMSSNSSASGAYSLTVTFEVGTDIDMATVMVQNRVSVALNSLPEAVKVQGVTVQKQSS 135

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA---MMIFIIRYKKMK 521
           +  +   ++   ++             +     +    A++++ A    M   +  + M+
Sbjct: 136 NIVMMLTLSGDSIYDGLYLTNYANLNLVDQLTRVPGVGAVNVMGAGDYSMRVWLNPETMR 195

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +I P   +  I               +G S          +              +++
Sbjct: 196 IRNITPQQVYSAIQSQNMEVSAGYVGQPIGSSANNDFQYTLNVKGRLSTSEEFGDIILRV 255

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + + L  V           +  +        +   Q    +S+  ++ +     +
Sbjct: 256 E-DQGKVLRLRDVAKIELGSAEYGVVSKLKGQPTAGIAVYQLPGSNSLDVSKGVRARMAE 314

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           + E  P     N  +    +  + I + +   + + + +++ I+     W   L    T+
Sbjct: 315 LAETFPAGVKYNVTLDTTDVVHDSIDEVMKTFVEAIVLVVLVIFFFLQSWRAVLIPCLTI 374

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISF 757
            + +  TL   A  G   N   +  ++  I   V+D +VV +   R+    KL       
Sbjct: 375 PVSLIGTLAVMAALGFSINTLTLFGLILAIAIVVDDAIVVTENATRILDEGKL-----DA 429

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIF 814
           R   ++++ E  G  V   +      +P   + G  G +   FA+ +A   V++  +S+ 
Sbjct: 430 RAATEQAMGEITGPIVGVVLVLLAVFIPTTLISGISGQLYKQFALTIAASTVISGFNSLT 489

Query: 815 IAAPILLFIYD 825
           +   +   +  
Sbjct: 490 LTPAVCALLLR 500


>gi|224539080|ref|ZP_03679619.1| hypothetical protein BACCELL_03980 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519298|gb|EEF88403.1| hypothetical protein BACCELL_03980 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1010

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 89/687 (12%), Positives = 188/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   GL+           +  +PS                        
Sbjct: 9   RRPVLSTVLTLIILLFGLI-----GYSYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q  ++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGSSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N            +  +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPIDVKNAVDKENVELPSGSIEGNTVELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E   R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLILREDNNRIIRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S S 
Sbjct: 273 KMNGVPMVGIVVVPQPGANHIKIADAVYERMEQMQKDLPDDVQYSYGFDNTKFIRASISE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  +V
Sbjct: 333 VKETVYVAFILVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIERGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ K+        FF   + I
Sbjct: 453 GMTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLVKQEKKNWFYMKTEPFFEGMNRI 512

Query: 539 A-----IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 I   +       I     I              ++ +  I +       V    
Sbjct: 513 YSRSLEIFLHKRWLAMPLILATLIIIVFLWNAIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISF---------QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S          +   G  N  + L+        Q  V E + K + +
Sbjct: 573 IRDYTEDINQLVDSILPDAESVTARVSSGSGNVRITLKDMKDRDYTQMEVAEQISKAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTKARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +    N+
Sbjct: 866  SFKDPLIIMLTVPLAIAGALIFMYFNDITMNIFSQIGIIMLIGLVAKNGILIVE--FANL 923

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            K         + I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 924  KQ-EAGEDKMEAIKDASLQRLRPILMTSASTILGLIPLAFASGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   +++I   I  ++   R+K  +
Sbjct: 983  LVSTFLTMYIVPAIYSYVSTNRSKLKK 1009



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        L G   N+ ++ AV+  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAVVLAVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +  ++   +   E     + T++       P+    G        F+I ++  
Sbjct: 410 YVRIERGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMDGMTGRLFREFSIVVSGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   + K  
Sbjct: 470 VIISSFAALTFTPMLATKLLVKQEKKN 496


>gi|319410962|emb|CBY91358.1| drug efflux transport protein MtrD [Neisseria meningitidis WUE
           2594]
          Length = 1067

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/570 (12%), Positives = 160/570 (28%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I  D       +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRDNTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMADEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 102/291 (35%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    +++       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMADEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|303246255|ref|ZP_07332535.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio fructosovorans JJ]
 gi|302492318|gb|EFL52190.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio fructosovorans JJ]
          Length = 1048

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/681 (9%), Positives = 173/681 (25%), Gaps = 44/681 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G L           + ++P   P               + +    
Sbjct: 9   RPVFAWVIAIILLSLGGLSI-----YSMPIAQYPPIAPP-------------SISITAYY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S    + ++ ++F      +    KV  
Sbjct: 51  PGASAETVENTVTQIIEQKMTGLDGMLYLSGSSSSSGEARVEMTFTPGTDPDIAWSKVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L    +++ +  +      +++     +       +            +   
Sbjct: 111 KLQLAMASLPETVQQSGVKVSKSTRNYLIVVGLISEDGSMGGEDLRDYAQSTLEKVLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L     T   +       N       FG        
Sbjct: 171 PGVGEVENFGTQ-YAMRVWLDPDKLHSFNLTMGDVISALKAYNVEVSAGQFGGAPAVPGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +                +      +                              
Sbjct: 230 HLNSPI-------------IVQHLLQTPQQFADIPLRINQDGSMVRIKDVGRTELGSERS 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +   T +        +          +           
Sbjct: 277 DVVAYHNGRPAAAMAIRQASGANALSTAQAIKDKMEEMSRYFPHGMKVVYPYDTTPFTKV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +++F+ +   +  L+   ++ + ++ T A+L+  G ++ + ++
Sbjct: 337 AIHEVVKTLFEAVVLVFLIMFLFMGNIRATLIPTIAVPVVLMGTFAVLNFCGYSINMLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475
             +VL IGL VD  I+V E +      +  S   +         S  I    + + +   
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMSEEGISPREATAKSMDEITSALIGIGLVLSAVFGP 456

Query: 476 VLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R F+IT+  S+L+S+  A+ +   +          K  + +    FFL
Sbjct: 457 MAFFQGSTGVLYRQFSITIIASMLLSVLVALILTPVLCATF-LKPVAKGHESSETVVFFL 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            P       +  +     +S++    +    +       +   G +   +  +   D   
Sbjct: 516 RPFFRWFDAVFFKVRAAYVSLVGHSFAKATRYLVLYCAIVVLVGYLFHRMPTSYIPDEDQ 575

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST--I 651
               +++      S           VR  +   +  A    +++                
Sbjct: 576 GILTVQATLPPGTSTLEQTQAVMQKVRNYFLEKEKDAVESFMDISGVSFGGQGQNMALGF 635

Query: 652 QNTEIVGPKISRELIRKGIVG 672
              +    +    L  K I  
Sbjct: 636 VKLKDWDKRPGDNLKVKAIAA 656



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 76/197 (38%), Gaps = 9/197 (4%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            + A    +E + +     + +    +T         E+++     V++  + M +++  
Sbjct: 303 TAQAIKDKMEEMSRYFPHGMKVVYPYDTTPFTKVAIHEVVKTLFEAVVLVFLIMFLFMG- 361

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                  L     + + +  T       G   N+  + A++  IG  V+D +VV + +  
Sbjct: 362 --NIRATLIPTIAVPVVLMGTFAVLNFCGYSINMLTMFAMVLAIGLLVDDAIVVVENV-- 417

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    IS R+   KS++E     +   +       PMA + GS       F+I +  
Sbjct: 418 ERIMSEEGISPREATAKSMDEITSALIGIGLVLSAVFGPMAFFQGSTGVLYRQFSITIIA 477

Query: 804 GIVVAASSSIFIAAPIL 820
            ++++   ++ I  P+L
Sbjct: 478 SMLLSVLVAL-ILTPVL 493



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 73/246 (29%), Gaps = 13/246 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A + V +S       ++    +   N     N             A   +     K   
Sbjct: 800  TAGKMVPVSAFAKGRWAIGSPKLERYNAFPSINLWGEPAPGHSTGEAMALMESFASKLPQ 859

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +         ++         S   + + +   ++ W   +  +  L L
Sbjct: 860  GIGFDWTGLSYQERMATAQGPILY------AFSIFVIFLCVAALYESWTIPIVNMLMLPL 913

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +   ++ G+  ++      LT +G S  + +++   +++                
Sbjct: 914  GVLGAIVATSMRGLPNDVYFQIGFLTTLGLSTKNAILIIQFIKE---RMGHGEGLVRATL 970

Query: 763  KSINETLGRSVYTSMAAFISVLP---MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             ++       + TS+A F  VLP       G   + +    +  G++ A    +      
Sbjct: 971  GAVKVRFRPVMMTSLAFFFGVLPLALANGAGAGAMNAIGTAVCGGMISATFIDLVFIPLF 1030

Query: 820  LLFIYD 825
             + I +
Sbjct: 1031 FVVISN 1036


>gi|170077280|ref|YP_001733918.1| protein-export membrane protein SecF [Synechococcus sp. PCC 7002]
 gi|169884949|gb|ACA98662.1| protein-export membrane protein SecF [Synechococcus sp. PCC 7002]
          Length = 270

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/237 (29%), Positives = 135/237 (56%), Gaps = 7/237 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             N+ + Q    S     G++     ++    D   ++R+L+ ++ ++  + P       
Sbjct: 20  IQNVVNNQGVGSSTVQILGQERTTFSVRTPQLDVDQRSRLLDALESEVGALDPG--TIQI 77

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           + VGP I REL  +G++ +++S   +++Y+ IRF++ +AL AI  L  D+  T G FAL 
Sbjct: 78  DSVGPTIGRELFVQGMLALLVSFFGIIVYLSIRFQFDYALFAIAALFHDVLVTAGVFALL 137

Query: 715 GI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           G+    E +   + A+LT+IG+SVND VV+YDR+R+N+K      +   ++D S+ +TLG
Sbjct: 138 GLVLGVEVDSLFLVALLTIIGFSVNDTVVIYDRVRENLKA-DEGDNIDQVVDHSVQQTLG 196

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           RS+ T++   + ++ + ++GGS +  FA+ +  G +  + SSIF+A+ +L +  +  
Sbjct: 197 RSINTTLTTLLPLVAIFLFGGSTLKFFALALIIGFICGSYSSIFVASTLLAWWRNRN 253


>gi|256424339|ref|YP_003124992.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
 gi|256039247|gb|ACU62791.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
          Length = 1057

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/573 (11%), Positives = 163/573 (28%), Gaps = 41/573 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  +G++           + +FPS  P              ++  E  
Sbjct: 7   QRPVLSIVISLIIVFLGVISI-----TSLPVTQFPSISPPK-----------VNVTCE-- 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   + +     L   +    G+   +     +    + + F         +  V 
Sbjct: 49  YPGANGELMIKSVIIPLERAINGVPGMKYMTSDAGNDGEATLQVVFNLGTDPNQASLNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V +KL     +  +  +  +   ++      +   +             + ++  
Sbjct: 109 NRVASVVNKLPPLVVREGVKVSRVESSMLMYVNLYSEDPNADQKFLFNFADINLLPELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P R+     +  ++       +        G    R S
Sbjct: 169 VDGVGFVDILGNREYAMRIWLKPDRMLAYKISADEVMKSLAEQSLEASPGKTGESSGRRS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++                      +    I                 I    ++
Sbjct: 229 QSFEYVLKYSGR-------------FNSKEQYENVILRSNPNGEILRLKDVAEIEFGSSM 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG-SLPIKLNIVEERNVGAD 355
                 L        +       + +  I+        ++           +        
Sbjct: 276 YDIYSNLNGKPSAAIVLKQSYGSNASQVIKDVKAKLKEIKGNSFPKGMNYEISYDVSKFL 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV IV+F+ +   +  L+   ++ +++I T   +   G TL L 
Sbjct: 336 DASIEKVIHTLVEAFVLVGIVVFLFLGDWRSTLIPAMAVPVSLIGTFVFMQFFGITLNLI 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IG+ VD  I+V E +  +  +   S   +           I           
Sbjct: 396 TLFALVLAIGVVVDDAIVVIEAVHAKMEEEHLSPLKATKKAMHEIAGAIIAITFLMSAVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V + F  G      R F+ITM  +I++S   A+++  A+   I++    K   ++P+ +F
Sbjct: 456 VPVAFMSGPVGIFYRQFSITMATAIILSGVVALTLTPALCAMILKNNHGKKKKLSPVDKF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
               +    +        +   I   + +  +L
Sbjct: 516 LAAFNRGFDKTQGRYMRILKSIINRRLVTFAML 548



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/244 (16%), Positives = 89/244 (36%), Gaps = 11/244 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              S      S  N       +++  Y    S     V   +K+      P         
Sbjct: 270 EFGSSMYDIYSNLNGKPSAAIVLKQSYGSNASQVIKDVKAKLKEIKGNSFPKGMNYEISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              K     I K I  ++ + + + I +++    W   L     + + +  T  F   FG
Sbjct: 330 DVSKFLDASIEKVIHTLVEAFVLVGIVVFLFLGDWRSTLIPAMAVPVSLIGTFVFMQFFG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I  NL  + A++  IG  V+D +VV + +    K+    +S      K+++E  G  +  
Sbjct: 390 ITLNLITLFALVLAIGVVVDDAIVVIEAVH--AKMEEEHLSPLKATKKAMHEIAGAII-- 445

Query: 776 SMAAFI-SVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAK 829
           ++   + +V     +    +      F+I MA  I+++   ++ +   +  + + +   K
Sbjct: 446 AITFLMSAVFVPVAFMSGPVGIFYRQFSITMATAIILSGVVALTLTPALCAMILKNNHGK 505

Query: 830 NARI 833
             ++
Sbjct: 506 KKKL 509



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 78/250 (31%), Gaps = 10/250 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +             + +    Q   S A         + I E+  
Sbjct: 790  YVKNDRDEMVPFSAFMKMEKVYGLSEITRYNMYNSSQISGSAAPGYSSGQAIQVIDEVAK 849

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWI---RFKWYFALGAITTLILD 703
             +  +   I    IS++ + +G   + I  I +  +Y+ +      +      I +L   
Sbjct: 850  KTLPRGFGIDWAGISKDEVAQGNQAIYIFLICLGFVYLILAAQYESFILPFAVILSLPAG 909

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I        + G+E N+ A  A++ LIG    + V++ +     ++ + +  +      +
Sbjct: 910  ICGAFFLLTVLGLENNIYAQVAMVMLIGLLGKNAVLIVEFA---VQKHRSGSTVLAAAME 966

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    ++P+ +  G       +     A G++      + I   + 
Sbjct: 967  GSKVRFRPILMTSFAFIAGLIPLVIATGPGKIGNRTIGTAAAGGMLFGTIFGVLIIPGLY 1026

Query: 821  LFIYDWRAKN 830
                    K 
Sbjct: 1027 YIFGKIAEKR 1036


>gi|149277678|ref|ZP_01883818.1| acriflavin resistance protein D [Pedobacter sp. BAL39]
 gi|149231366|gb|EDM36745.1| acriflavin resistance protein D [Pedobacter sp. BAL39]
          Length = 1068

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 74/554 (13%), Positives = 162/554 (29%), Gaps = 28/554 (5%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
            +    + ++P+  P      G              + + V   +    +   +      
Sbjct: 27  VITTLPISQYPNIAPPTVTVSG---------TYTGADAETVEQTVTTPIESQINGTPGMK 77

Query: 86  IGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
               +      + IT++F      +  A  V   +      L    ++  + T       
Sbjct: 78  YLQSNSTSDGRSAITVTFDVGTNIDIAALDVQNRVGIAEPALPEAVRRLGVTTKKANNDI 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +++               S  +     D +                  +    D ++L +
Sbjct: 138 LMVVGLYSPNGTYDQKFISNYVNLYVKDALLRIPGVGDVQAFG-QPFSMRVWLDANKLAR 196

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L  T A +S      N+   G   G     +S   ++ V    +++              
Sbjct: 197 LGLTPADVSTAIAEQNSRIPGGTVGGPPQANSQTFEFSVVLDGDLNTEE----------- 245

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    I  +       +      +            +   V +    +     +   T
Sbjct: 246 --QFRDIIIKNGTDGSPVYLRDVARVELGEFSYATRSKINGKVSSMMAINQTPGGNAVQT 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            +        L+A         +    V     S S    T      LV IV+F  +   
Sbjct: 304 ADGIEKALKELKASFPKDLDYAIGYETVSIVKVSISEVIHTLVEALILVTIVVFFFLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   +I +++I T  L ++LG ++ + ++ G VL IG+ VD  I+V E ++     
Sbjct: 364 RATLIPVLAIPVSIIGTFILFTVLGFSINVLTMFGFVLAIGIVVDDAIVVVEAVQHYMDH 423

Query: 445 -NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISM 500
              S   +         + +    +      + + F  G      + FAIT+ +S+LIS 
Sbjct: 424 DGLSAPDATRRAMKDITAPVIAIALILAAVFIPVGFIPGMVGQLYQQFAITIAVSVLISA 483

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
           F A+S+  A+   ++    +          F+      A                  +  
Sbjct: 484 FIALSLTPALCSLLLTPMNLTKESRGLNKFFYKFNIWFAKVTHNYSNGVKWCLKKAPLVM 543

Query: 561 ICLLFTHGLNYGID 574
           + L+  +    G+ 
Sbjct: 544 VILVCLYVGTVGLF 557



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 69/168 (41%), Gaps = 10/168 (5%)

Query: 673  VIISAIAMLIYI---WIRFKWYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLT 728
            +I + I + +++    +   W      + ++ L +    L    L  ++ N+ A   ++T
Sbjct: 874  LIFALIIVFVFLLLAALYESWSVPFSILLSVPLGLFGAILALTFLPKLDNNIYAQVGLIT 933

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG S  + +++ +  ++        +       +++   L   V TS+A  + V+P+ +
Sbjct: 934  LIGLSAKNAILIVEFAKE---RVDWGMELIAATIEAVRLRLRPIVMTSLAFILGVIPLII 990

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G     +    +A G++ A   +IFI   + + I        ++
Sbjct: 991  SHGAGAVSRMTIGWTVAAGMLSATLLAIFIVPVLFVLITKLAYGKKKL 1038



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            PV L  V              +      + +   Q   G++V     +E   K++    
Sbjct: 259 SPVYLRDVARVELGEFSYATRSKINGKVSSMMAINQTPGGNAVQTADGIEKALKELKASF 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P             I +  I + I  ++ + I + I ++     W   L  +  + + I 
Sbjct: 319 PKDLDYAIGYETVSIVKVSISEVIHTLVEALILVTIVVFFFLQSWRATLIPVLAIPVSII 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T   F + G   N+  +   +  IG  V+D +VV + ++  M      +S  D   +++
Sbjct: 379 GTFILFTVLGFSINVLTMFGFVLAIGIVVDDAIVVVEAVQHYMDH--DGLSAPDATRRAM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +     +  ++      +P+       G +   FAI +A  ++++A  ++ +   +   
Sbjct: 437 KDITAPVIAIALILAAVFIPVGFIPGMVGQLYQQFAITIAVSVLISAFIALSLTPALCSL 496

Query: 823 I 823
           +
Sbjct: 497 L 497


>gi|134282398|ref|ZP_01769103.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 305]
 gi|134246436|gb|EBA46525.1| multidrug efflux pump AmrB [Burkholderia pseudomallei 305]
          Length = 1043

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/622 (11%), Positives = 171/622 (27%), Gaps = 41/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+            + ++P   P   +SL        +       
Sbjct: 8   RPVFAWVISLFIMLGGIFAI-----RALPVAQYPDIAPP-VVSL--------YATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +        +    Q  ++L+F      +  A  V   L+ V
Sbjct: 54  AQVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      + + ++     +      +E         +  +   E   +
Sbjct: 114 EARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASANVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     ++                                +      I            
Sbjct: 233 VLADAPLT-------------TPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSF 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L     P     +          S S  
Sbjct: 280 VNGKTATGMGIKLAPGSNAVATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+F+ +   +  L+    + + ++ T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLVEAGVLVFAVMFLFMQNFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529
              G   R FA  + +SI  S F A+S+  A+   +++                +     
Sbjct: 460 GAVGNIYRQFAFALAVSIGFSAFLALSLTPALCATLLKPVADDHHEKDGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R   W V    L +  ++ +          + +G   + V+  +  
Sbjct: 520 STHRYTRRVGRVLERPLRWLVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNF 611
            L+    ++  ++    +    
Sbjct: 580 PLAETMQSVRRVEEYVRTHSPS 601



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 71/203 (34%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +E + K     V       T         +++   +   ++    M +++ 
Sbjct: 300 ATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +   +   K++ +  G  V  ++      +PMA +GG+V      FA  +A
Sbjct: 416 -ERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 67/195 (34%), Gaps = 9/195 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFA 693
                 I  I              +   E +      ++ +   +++++ +      W   
Sbjct: 833  EAMAAIERIASTLPAGTGYAWSGQSYEERLSGAQAPMLFALSVLVVFLALAALYESWSIP 892

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   +    L G+  ++     ++  IG S  + +++ +  +    L   
Sbjct: 893  FAVMLVVPLGVIGAVAGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKD---LVAQ 949

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAAS 810
             +S  D   ++    L   V TS+A  + VLP+    G +     AI      G++ A  
Sbjct: 950  RMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFATGAASGAQIAIGTGVLGGVISATL 1009

Query: 811  SSIFIAAPILLFIYD 825
             +IF+     + +  
Sbjct: 1010 FAIFLVPLFFVCVGR 1024


>gi|291443392|ref|ZP_06582782.1| export membrane protein SecD [Streptomyces roseosporus NRRL 15998]
 gi|291346339|gb|EFE73243.1| export membrane protein SecD [Streptomyces roseosporus NRRL 15998]
          Length = 562

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 106/543 (19%), Positives = 205/543 (37%), Gaps = 42/543 (7%)

Query: 45  SLGLDLRGGSHLVLEVD-----EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KI 98
            LG+DL GG+ + LE        +      +      +   +   G+    ++   N  I
Sbjct: 10  RLGIDLAGGTSITLEAQNQPGKPNAINPTNMDTAVGIIERRVNGLGVSEAEVQTQGNKNI 69

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKL--------------------------NVDPKK 132
            ++       +   ++V    Q     +                            +  +
Sbjct: 70  IVNIPKGTNSKQAQEQVGTTAQLYFRPVLTVQASGPEEPKPSDSASPSASGTPKPGESAQ 129

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
                  E +     +  +     + A  Q   +            ++ +   S      
Sbjct: 130 GEDKAKDEDKPQGEEATGSEATPSASATTQGRAVTGALKKDDPTPGASDKPKASESPEAS 189

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY--LVEDKVEIS 250
              +   ++L++           +             +     +    Y   +    E+S
Sbjct: 190 PSADPATAKLQEEFAKLDCTDPKQRTDAGKNAKATDSIVACGSNVPGSYEKYILGPAEVS 249

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
           G  ++ A    D +T + +V + F   GA++F  +T     +   +     VL   V++ 
Sbjct: 250 GSDVDDAKGAIDQQTGEWIVSMEFTSAGAKKFQTITGRLSQQQPPMNQFAIVLDGEVVSA 309

Query: 311 AIP----SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                  S  AQISG+FT ++A  L  +L  G+LP+    V    V A LGS+ +  G  
Sbjct: 310 PSVRQALSKNAQISGSFTQQSAEDLGNILSYGALPLTFKEVSVTTVTAALGSEQLQAGLI 369

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVL 422
           A   GL L++++++V Y     +A  S+ ++ ILT  ++SLLG      L LP++ G ++
Sbjct: 370 AGAIGLALVIIYLVVYYRGLAFIALLSLLVSGILTYTIMSLLGPAIGFALNLPAVCGAIV 429

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+  DS I+  ER+R+E R+ +++  +++  + RA  TI  S+  + +A  VLF    
Sbjct: 430 AIGITADSFIVYFERVRDEIREGRTLRPAIERAWPRARRTILVSDFVSFLAAAVLFIVTV 489

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
           G V+GFA T+GL+ L+ +       + +M  + R K               +     ++ 
Sbjct: 490 GKVQGFAFTLGLTTLLDVVVVFLFTKPLMTLMGRTKFFSKGGPWSGLDPKRLGAQPPLRR 549

Query: 543 MRA 545
            R 
Sbjct: 550 SRR 552



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 90/282 (31%), Gaps = 8/282 (2%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V  S +          T      ++F                       +   + D    
Sbjct: 248 VSGSDVDDAKGAIDQQTGEWIVSMEFTSAGAKKFQTITGRLSQQQPPMNQFAIVLDGEVV 307

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
           +    +  L +     G    Q+            +       +   V   +  E ++ G
Sbjct: 308 SAPSVRQALSKNAQISGSFTQQSAEDLGNILSYGALPLTFKEVSVTTVTAALGSEQLQAG 367

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAA 725
           ++   I    ++IY+ + ++   A  A+ +L++    T    +L G       NL AV  
Sbjct: 368 LIAGAIGLALVIIYLVVYYR-GLAFIALLSLLVSGILTYTIMSLLGPAIGFALNLPAVCG 426

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +  IG + +  +V ++R+R  ++      + R  I+++        + +   +F++   
Sbjct: 427 AIVAIGITADSFIVYFERVRDEIRE---GRTLRPAIERAWPRARRTILVSDFVSFLAAAV 483

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + +     +  FA  +    ++          P++  +   +
Sbjct: 484 LFIVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPLMTLMGRTK 525


>gi|225686173|ref|YP_002734145.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           ATCC 23457]
 gi|256262703|ref|ZP_05465235.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           bv. 2 str. 63/9]
 gi|225642278|gb|ACO02191.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           ATCC 23457]
 gi|263092488|gb|EEZ16741.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           bv. 2 str. 63/9]
 gi|326410509|gb|ADZ67573.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           M28]
 gi|326553800|gb|ADZ88439.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           M5-90]
          Length = 1074

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/547 (11%), Positives = 153/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++G               +    I                 +       
Sbjct: 231 QIQLTLTTQGRLTGA-------------KQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYGTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 42.0 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRK 746
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV    +R+  
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENVERVMA 423

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
                   +  ++   +++ E     +  ++      +P+A      G++   FA+ ++ 
Sbjct: 424 ET-----GLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSV 478

Query: 804 GIVVAASSSIFIAAPIL-LFIYDWRAKNARI 833
            ++++A +++ ++  +  +F+   + +   +
Sbjct: 479 AMLISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|227822504|ref|YP_002826476.1| AcrB/AcrD/AcrF family protein [Sinorhizobium fredii NGR234]
 gi|227341505|gb|ACP25723.1| AcrB/AcrD/AcrF family protein [Sinorhizobium fredii NGR234]
          Length = 1076

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 182/686 (26%), Gaps = 47/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GL+      L    + +FP  +P               + +    
Sbjct: 9   RPRFAAVISIVLTLAGLIA-----LTALPVAQFPDIVPP-------------QVSVTASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + S +     +         +    +T++FA     +     V  
Sbjct: 51  PGAGAEVVESTVAQPIESQIVGVDDMLYMKSTSGADGSYTLTVTFAVGTDPDIATVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  + K++ +    +    + +   + +      +  S       +D I   
Sbjct: 111 RVSLAEARLPSEVKQSGVSVRKKSSALMQVIAIHGENDSFDNLFLSNYATINVMDTIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D  RL  L  T   +       N        G + + D  
Sbjct: 171 PGVGDAALFGAQDYSMRVVLDIDRLTSLGMTPTDVINALKAQNVQAAIGRIGAQPMTDDP 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  ++ +  ++                +    +   E             +    A  
Sbjct: 231 LFQLNLQTQGRLA-------------DPKQFEDVVLRAEADGSFVRIRDVAKVELGAASA 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +           +     E        L           +          
Sbjct: 278 DSSSRFNGKPVAMIGTYLAPGANALAAAEGVRTALERLSQAFPEGLTYKISYDTSEFVEA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + +I T A++  +G +L   S+
Sbjct: 338 SVENVVHTLIEAFVLVILVVFLFLGNWRATLIPLIAVPVALIGTFAVILAMGFSLNTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E +              +  +        I    +  L   V
Sbjct: 398 LALVLAIGIVVDDAIVVVENVERVMEENPGMQAPEAARLAMGEITGAIVAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G +    + FA+ + +S++IS   A+++  A+   +++    +   I       
Sbjct: 458 PVAFIPGLSGQLFQQFAVAVSVSMVISAINALTLSPALCAVLLKPHHGEKRGILGWISRR 517

Query: 533 LIPDCIAIQF------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           +        F       RA    V +++  +                + +G     V   
Sbjct: 518 IDNGRDGYVFVAEKIARRAVIGLVLLAVAIAASGWLFRVVPTGFLPSEDQGMFFTEVRLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +   + L  ++      +      +                  +  +K       
Sbjct: 578 EGASYNRTDAALRRVETFLRDIEGVQDVTSVSGYSFLDGLSKSNSAFAVVTMKPFGEREA 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
             +++ +           +    +  
Sbjct: 638 ASASVNSAIATAMAKGLTVREAQVFS 663



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 74/216 (34%), Gaps = 9/216 (4%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            R     G         E ++              +        +EL   G   VI++   
Sbjct: 820  RSITLNGQPATGVSSGEALQAMAALSATTLPPGYSYEWTGTALQELEAAGQTTVILALAV 879

Query: 680  MLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +  Y   + +   W   +  + ++ + +T  L    + G+ F++ A   ++ LI  +  +
Sbjct: 880  LFAYLFLVALYESWTIPVPVLLSVAIGVTGALISVLIAGLSFDVYAQIGLVVLIALASKN 939

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI-- 794
             +++ +  +             +   +         + TS A  + ++P+    G+ +  
Sbjct: 940  AILIVEFAK---FQREKGAGIVEAAVEGARARFRAVMMTSFAFIVGLIPLVTADGAGMLS 996

Query: 795  -GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +    +A G++ A+   IF+   + +     R +
Sbjct: 997  RRAVGTGVAGGMLAASLLGIFVIPALYVTFQWLRER 1032



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 89/243 (36%), Gaps = 5/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V          D S +        +        +++A    +    +++++  
Sbjct: 260 SFVRIRDVAKVELGAASADSSSRFNGKPVAMIGTYLAPGANALAAAEGVRTALERLSQAF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P            +     +   +  +I + + +++ +++    W   L  +  + + + 
Sbjct: 320 PEGLTYKISYDTSEFVEASVENVVHTLIEAFVLVILVVFLFLGNWRATLIPLIAVPVALI 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N  ++ A++  IG  V+D +VV + + + +      +   +    ++
Sbjct: 380 GTFAVILAMGFSLNTVSLLALVLAIGIVVDDAIVVVENV-ERVMEENPGMQAPEAARLAM 438

Query: 766 NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  V  ++      +P+A      G +   FA+ ++  +V++A +++ ++  +   
Sbjct: 439 GEITGAIVAITLVLLSVFVPVAFIPGLSGQLFQQFAVAVSVSMVISAINALTLSPALCAV 498

Query: 823 IYD 825
           +  
Sbjct: 499 LLK 501


>gi|190574156|ref|YP_001972001.1| putative multidrug ACR family efflux system [Stenotrophomonas
           maltophilia K279a]
 gi|190012078|emb|CAQ45700.1| putative multidrug ACR family efflux system [Stenotrophomonas
           maltophilia K279a]
          Length = 1049

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/589 (12%), Positives = 150/589 (25%), Gaps = 41/589 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G+L       P+  ++R+P+  P               + +    
Sbjct: 8   RPVFAWVLAIFIILAGVLAI-----PRLAVERYPAVAPP-------------SVSIYASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L       +   L                 +  IT +F      E     V  
Sbjct: 50  PGASPQTLNDAVVGLIERELSSVKHLLYFESSVDTSGEASITATFKPGTNPELAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ +  +L    ++N L         ++L                  + R  I+++   
Sbjct: 110 RIKAIEPRLPRSVRQNGLFVEAADSGFLMLVGLRSPDASVSEAALGDFMARNIIEELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP+RL     T   ++      N        G        
Sbjct: 170 DGVGRVQLFGA-EQAMRVWLDPTRLTGYGLTMGDVAAAIEQQNLEISPGRIGDSPGVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    ++S                +    +        R        +       
Sbjct: 229 RITVPLSADGQLS-------------TPEQFAAIVLRAGADGSRVVLGDVARVELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G          A    +   +   T        A L         + +          
Sbjct: 276 AWGTREDGHPATAAGVQLRPGANAVRTASAVRERMAELAPLLPRGVESSIPFDTAPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+++ +   ++ L+      + ++ T A++  LG ++ + ++
Sbjct: 336 SIQKVVQTLLEAMLLVFAVMYLFLQNWRYTLIPALVAPIALLGTFAVMLALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVEGVERIMAEEGLPPREATIKAMRELTGAVIGITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +    G      R F + M +SIL S   A+S+  A+   ++R           L   F 
Sbjct: 456 MALASGSVGAIYRQFTVAMAVSILFSALLALSLTPALCATLLRPNTHGHHGRGGLFGAFN 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                     +     V       +     L    L       G     
Sbjct: 516 RGFERMTGRYQRGVASVLQRSGRVMGVFAALVAALLLGLHWLPGAFLPE 564



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 6/223 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q      +                 ++V     +     ++  ++
Sbjct: 258 SRVVLGDVARVELGAQSYAWGTREDGHPATAAGVQLRPGANAVRTASAVRERMAELAPLL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I+K +  ++ + + +   +++  + W + L       + + 
Sbjct: 318 PRGVESSIPFDTAPFVKISIQKVVQTLLEAMLLVFAVMYLFLQNWRYTLIPALVAPIALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++  IG  V+D +VV + +     +    +  R+   K++
Sbjct: 378 GTFAVMLALGFSINVLTMFGMVLAIGIIVDDAIVVVEGV--ERIMAEEGLPPREATIKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            E  G  +  ++      +PMA+  GSV      F + MA  I
Sbjct: 436 RELTGAVIGITLVLTAVFIPMALASGSVGAIYRQFTVAMAVSI 478



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 62/150 (41%), Gaps = 5/150 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +    +++S + + + +   ++ W   L  +  + L +   +    L G+  ++     +
Sbjct: 865  QAPWLLLLSMLVVFLVLAALYESWSIPLAVMLVVPLGLLGAVAAVLLRGMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  R   +L        +   ++    L   V TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAR---QLQQQGRGLVEAALEAARLRLRPIVMTSLAFALGVVPL 981

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +  G+        +  G+     S+  +A
Sbjct: 982  MLAQGAS-KETQQAIGTGVFGGMVSATVLA 1010


>gi|146311546|ref|YP_001176620.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Enterobacter
           sp. 638]
 gi|145318422|gb|ABP60569.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter sp. 638]
          Length = 1050

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/550 (11%), Positives = 146/550 (26%), Gaps = 35/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++        +  D++     
Sbjct: 114 SQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPGGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRIWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPKESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +              L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMDELSTRFPEDMKWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++++ T  +L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVALVVLVVILFLQTWRASIIPLIAVPVSIVGTFGILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++           L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAALLLKPHGAPKDYPTRLIDRLFGWI 520

Query: 537 CIAIQFMRAR 546
                    R
Sbjct: 521 FRPFNRFFHR 530



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 88/266 (33%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPKESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+             P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMDELSTRFPEDMKWAA-PYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                  A+ +L+ I     W  ++  +  + + I  T G   L G   N  ++  ++  
Sbjct: 345 QTLLEAVALVVLVVILFLQTWRASIIPLIAVPVSIVGTFGILYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 8/142 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDW 826
            ++      +F+     + +  +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKF 1037


>gi|299531720|ref|ZP_07045124.1| transporter, hydrophobe/amphiphile efflux-1 [Comamonas testosteroni
           S44]
 gi|298720279|gb|EFI61232.1| transporter, hydrophobe/amphiphile efflux-1 [Comamonas testosteroni
           S44]
          Length = 1076

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/585 (11%), Positives = 157/585 (26%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +    +  +P   P + +                  
Sbjct: 10  RPIFAGVLSVLIFLAGLIA-----MRTLPISEYPEVAPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++FA     +     V   +  
Sbjct: 56  PKVIAETVATPLEESINGVEGMLYMGSQATTDGVMTLTVTFALGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   +   
Sbjct: 116 AEPRLPEEVRRLGITTVKSAPDLTMVVHMVSPNGRYDIDYLRNYAVLNVKDRLARIKGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   + A +       N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRAWLDPQKVAQRGLSAADVVAAIRGQNVQAAAGVVGASPGLPGVDMQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    A      
Sbjct: 236 SINAQGRLQTEE-------------EFGDIIVKTGADGAVTRLRDVARLELGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +            A L+          +          S   
Sbjct: 283 LLNNDPAVGMGVFQAPGSNALEISANVRSTMAELQKHMPEGVEFRIAYDPTQFVRASIKS 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++V+ T A+L LLG ++   S+ G+V
Sbjct: 343 VIQTLLEAVALVVVVVILFLQTWRASIIPLLAVPVSVVGTFAVLHLLGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLSPRQATYRAMQEVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+ +S +IS   ++++  A+   ++R        +             
Sbjct: 463 GLTGQFYRQFAVTIAISTVISAINSLTLSPALSALLLRGHDAPRDALTRGMERVLGGFFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R      G           +L  + +  G  +     +
Sbjct: 523 RFNALFRRGSDAYSGGVQRVIGRKALMLVIYAVLVGATWGLFKLV 567



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 85/257 (33%), Gaps = 12/257 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
             +  G +++       V LS +   LE     + + +        +         S    
Sbjct: 790  AEDVGLLKVRSTTGEMVPLSALMK-LEPSFGPERAMRYNGFLAADVNGGPAPGFSSGQAQ 848

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +E +  +                            ++   I+ + + + +  +++   
Sbjct: 849  AAVERIAAETLPPGIGFEWTELTYQEILAGN----SAVLVFPIAILLVFLVLAAQYESLT 904

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  I  + + +   +    L G + N+     ++ L+G S  + +++ +  R+   L 
Sbjct: 905  LPIAIILIVPMGLLAAMTGVWLSGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE---LE 961

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                +      ++    L   + TS+A  + VLP+ +    G  +  +  + +  G++  
Sbjct: 962  FAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGAEMRSAMGVAVFAGMIGV 1021

Query: 809  ASSSIFIAAPILLFIYD 825
             +  +F+     + +  
Sbjct: 1022 TAFGLFLTPVFYVVLRR 1038



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 83/228 (36%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L +     +      G     +    +   +  Q  + E V+ +I      
Sbjct: 275 AADYSLRSLLNNDPAVGMGVFQAPGSNALEISANVRSTMAELQKHMPEGVEFRIAYDPTQ 334

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + V   +   +    +V ++               W  ++  +  + + +  T 
Sbjct: 335 FVRASIKSVIQTLLEAVALVVVVVILFLQT-----------WRASIIPLLAVPVSVVGTF 383

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               L G   N  ++  ++  IG  V+D +VV + + +N++     +S R    +++ E 
Sbjct: 384 AVLHLLGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEA---GLSPRQATYRAMQEV 440

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            G  +  ++      +P+A      G     FA+ +A   V++A +S+
Sbjct: 441 SGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTVISAINSL 488


>gi|121600140|ref|YP_992987.1| multidrug efflux protein [Burkholderia mallei SAVP1]
 gi|254177686|ref|ZP_04884341.1| AcrB protein [Burkholderia mallei ATCC 10399]
 gi|121228950|gb|ABM51468.1| acriflavine resistance protein B [Burkholderia mallei SAVP1]
 gi|160698725|gb|EDP88695.1| AcrB protein [Burkholderia mallei ATCC 10399]
          Length = 1041

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/622 (11%), Positives = 171/622 (27%), Gaps = 41/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+            + ++P   P   +SL        +       
Sbjct: 8   RPVFAWVISLFIMLGGIFAI-----RALPVAQYPDIAPP-VVSL--------YATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +        +    Q  ++L+F      +  A  V   L+ V
Sbjct: 54  AQVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      + + ++     +      +E         +  +   E   +
Sbjct: 114 EARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRLSGVELGEYASANVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     ++                                +      I            
Sbjct: 233 VLADAPLT-------------TPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSF 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L     P     +          S S  
Sbjct: 280 VNGKTATGMGIKLAPGSNAVATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+F+ +   +  L+    + + ++ T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLVEAGVLVFAVMFLFMQNFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529
              G   R FA  + +SI  S F A+S+  A+   +++                +     
Sbjct: 460 GAVGNIYRQFAFALAVSIGFSAFLALSLTPALCATLLKPVADDHHEKDGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R   W V    L +  ++ +          + +G   + V+  +  
Sbjct: 520 STHRYTRRVGRVLERPLRWLVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNF 611
            L+    ++  ++    +    
Sbjct: 580 PLAETMQSVRRVEEYVRTHSPS 601



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 71/203 (34%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +E + K     V       T         +++   +   ++    M +++ 
Sbjct: 300 ATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +   +   K++ +  G  V  ++      +PMA +GG+V      FA  +A
Sbjct: 416 -ERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 67/195 (34%), Gaps = 11/195 (5%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFA 693
                 I  I              +   E +      ++ +   +++++ +      W   
Sbjct: 833  EAMAAIERIASTLPAGTGYAWSGQSYEERLSGAQAPMLFALSVLVVFLALAALYESWSIP 892

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   +    L G+  ++     ++  IG S  + +++ +  +    L   
Sbjct: 893  FAVMLVVPLGVIGAVAGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKD---LVAQ 949

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAAS 810
             +S  D   ++    L   V TS+A  + VLP+    G +     AI      G++ A  
Sbjct: 950  RMSLADAALEAAR--LRPIVMTSLAFGVGVLPLAFATGAASGAQIAIGTGVLGGVISATL 1007

Query: 811  SSIFIAAPILLFIYD 825
             +IF+     + +  
Sbjct: 1008 FAIFLVPLFFVCVGR 1022


>gi|237751572|ref|ZP_04582052.1| export protein secF [Helicobacter bilis ATCC 43879]
 gi|229372938|gb|EEO23329.1| export protein secF [Helicobacter bilis ATCC 43879]
          Length = 324

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 79/293 (26%), Positives = 151/293 (51%), Gaps = 2/293 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +        F+R   +G+  SIL ++ S  L F  G N GIDF GG    +   +   
Sbjct: 1   MEIFKQQKIFDFVRWSKYGLIASILLTLASFYLFFGVGFNLGIDFAGGSTAQIQYTQQNA 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                  L +      + Q      +  + ++    +++    +   +   +       +
Sbjct: 61  PMAEIRKLLATDERFKNAQVSRFGADNEIIIKIPFNENLKANEIDTTLHTLLESSGEF-S 119

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGPK+  EL +  I+ ++++ IAM+ Y+  R++W FAL +I  L+ DI  T   
Sbjct: 120 IRKLDTVGPKVGDELRKSAILSLVLATIAMMAYVSFRYEWRFALASIIALVHDIVITAAS 179

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F I+ NL  +AA+LTL+GYS+ND ++++DR+R+ M      ++  ++I+++++ TL 
Sbjct: 180 VIIFKIDLNLEVIAALLTLLGYSINDTIIIFDRIREKMLEG-KKMNANEVINEAVSSTLT 238

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           R+  TS+  F  VL + ++GG +I  F++P+  G+V    SS+F+A  + + +
Sbjct: 239 RTTLTSLTMFFVVLTLYLFGGQIIVGFSLPLLVGVVFGTYSSMFVAPKLAILL 291


>gi|330969954|gb|EGH70020.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 944

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 158/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL     +  +          ++            +  S   +    D++       
Sbjct: 116 SEPKLPEKVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGADGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKQSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLSGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDKMLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQD 577



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVAATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLSGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|301058966|ref|ZP_07199935.1| acriflavine resistance protein B [delta proteobacterium NaphS2]
 gi|300446962|gb|EFK10758.1| acriflavine resistance protein B [delta proteobacterium NaphS2]
          Length = 1060

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 55/538 (10%), Positives = 139/538 (25%), Gaps = 41/538 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L           + ++P   P               + ++   
Sbjct: 9   RPVFAWVIAIVMMAAGGLAI-----YSLPVSQYPPIAPP-------------SIAIDAFF 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S     ++I L+FA     +    KV  
Sbjct: 51  PGASAETVENTVTQIIEQKMTGLDDMIYLTGNSSSSGASRIELTFAPGTDPDLAWSKVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L    ++  +  +      ++L     +      ++            +   
Sbjct: 111 KLQLAMASLPDMVQRQGVKVSKSTRNYLILVGLISEDGSMDGVDLRDYAQSNLEKILSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L     T   +       N       FG      + 
Sbjct: 171 PGVGEVENFGSQ-YAMRIWVDPDKLTSYNLTMEDVVMALEAYNVEVSAGQFGGAPATKNQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +                +      +                              
Sbjct: 230 RLNAAI-------------IVQHLLQTPEEFAAIPVRTNPDGSVIRIKDIGRTELGTERY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          +     P    +         + 
Sbjct: 277 DVINDYNGKPAAAMAIRQVAGANALDTANAVKEKLKEMSRYFPPGMKVVYPYDTTPFTVV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV  ++++ +   +  L+   ++ + ++ T  +L   G ++ + ++
Sbjct: 337 AIEEVVKTLIEAVLLVFAIMYLFMGTFRATLIPTIAVPVVLLGTFGVLGFFGFSINMLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +  S +    +        
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATAKSMDQITSALVGIGLVLSAVFGP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + FF G      R F++T+  S+L+S+  A+ +   +   +++         +    F
Sbjct: 457 MAFFSGSTGVIYRQFSVTVIASMLLSVLVALILTPVLCASLLKPTPKGHEPADHAVFF 514



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 79/198 (39%), Gaps = 9/198 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    L+ + +     + +    +T         E+++  I  V++    M +++ 
Sbjct: 302 DTANAVKEKLKEMSRYFPPGMKVVYPYDTTPFTVVAIEEVVKTLIEAVLLVFAIMYLFMG 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G    FG   N+  + A++  IG  V+D +VV + + 
Sbjct: 362 ---TFRATLIPTIAVPVVLLGTFGVLGFFGFSINMLTMFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +S R+   KS+++     V   +       PMA + GS       F++ + 
Sbjct: 418 -ERIMSEEGLSPREATAKSMDQITSALVGIGLVLSAVFGPMAFFSGSTGVIYRQFSVTVI 476

Query: 803 FGIVVAASSSIFIAAPIL 820
             ++++   ++ I  P+L
Sbjct: 477 ASMLLSVLVAL-ILTPVL 493



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 85/255 (33%), Gaps = 19/255 (7%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A + V  S   S   +L    +   N     N             A   + E+  K   
Sbjct: 799  SAGKMVPFSSFASGRWTLGSPKLERYNAFPAINIWGEPAPGMSSGEAMAAMEEIASKLPQ 858

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +         ++         S   + + +   ++ W   +  + TL L
Sbjct: 859  GIGFDWTGLSYQERMATAQGPILY------AFSIFVIFLVLAALYESWPIPIAILMTLPL 912

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +   ++ G   ++     +LT++G +  + +++    +                 
Sbjct: 913  GVIGGVISSSMRGFPNDVYFQIGLLTILGLTTKNAILIVQFAK---ARVAEGADLVAATL 969

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS---IFIAAPI 819
            ++    L   V TS+A    VLP+A+  G+  G+    +  G++    +S   + + AP+
Sbjct: 970  EAAKLRLRPIVMTSLAFGFGVLPLAIATGAGAGA-QTAIGTGVLGGMVTSTVLVTVFAPL 1028

Query: 820  LLF-----IYDWRAK 829
                    +  +R +
Sbjct: 1029 FYVVIYKGLGKYRKR 1043


>gi|259415450|ref|ZP_05739371.1| hydrophobe/amphiphile efflux-1 HAE1 [Silicibacter sp. TrichCH4B]
 gi|259348680|gb|EEW60442.1| hydrophobe/amphiphile efflux-1 HAE1 [Silicibacter sp. TrichCH4B]
          Length = 1042

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 63/535 (11%), Positives = 149/535 (27%), Gaps = 40/535 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL+      +    + ++P   P               + +   
Sbjct: 8   RRPRLAMVISIVITIAGLIA-----MSAIPVAQYPEIAPPT-------------VQVSAS 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++      + S +    G+              +T+SF      +     V 
Sbjct: 50  YSGADTETVEEAVAVPIESQVNGVSGMRYMRSNSNNAGEYSLTVSFELGEDPDIATVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++    +L    +   L         + +   + +      +  +  +    ID++  
Sbjct: 110 NRVKLAEPRLPQAVRDQGLKIKKASTDILQVFTFHSENPDHDQMFLANFVAINIIDELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    DP ++  L  T   +       +        G   L + 
Sbjct: 170 IDGVGDVFNYGVRDYAMRIWLDPQKMSDLQMTVDDVVGAIRSQHLQASAGRIGAAPLVED 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                         G+ +   T        +    I   +             +    A 
Sbjct: 230 GA------------GLQMTIVTKGKLRNADEFKEIILRSDADGSFVRVKDVARVELGAAT 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +     E        L+                    
Sbjct: 278 YDVETRFEGNPNAPIAVFLSPGANAVAVAENVRHKLEELQQRFPEGVSYSFIYDTAEFVE 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                 + T      LV IV+F+ +   +  ++   ++ ++++ T A+L  LG +    S
Sbjct: 338 AMIKKVEHTLIEAFILVGIVVFVFLGRLRPTIIPLIAVPVSIVGTFAVLLALGYSANTIS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENR--KNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  ++L IG+ VD  I+V E + +      + S   +           I    +  L   
Sbjct: 398 LLAMILAIGIVVDDAIVVVENVEKVMHEEPDLSPADATRKAMKEITGPIIAITLVLLSVF 457

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           V + F  G +    R FA+T+  +++IS   A+++  A+   +++  +  S    
Sbjct: 458 VPVAFLPGSSGVLFRQFAVTISAAMVISAINALTLSPALCAVLMKPGQPVSFMRR 512



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 92/243 (37%), Gaps = 5/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V          D+  +        +        ++VA    +    +++ +  
Sbjct: 261 SFVRVKDVARVELGAATYDVETRFEGNPNAPIAVFLSPGANAVAVAENVRHKLEELQQRF 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P     +      +    +I+K    +I + I + I +++   +    +  +  + + I 
Sbjct: 321 PEGVSYSFIYDTAEFVEAMIKKVEHTLIEAFILVGIVVFVFLGRLRPTIIPLIAVPVSIV 380

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N  ++ A++  IG  V+D +VV + + + +      +S  D   K++
Sbjct: 381 GTFAVLLALGYSANTISLLAMILAIGIVVDDAIVVVENV-EKVMHEEPDLSPADATRKAM 439

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  +  ++      +P+A   GS       FA+ ++  +V++A +++ ++  +   
Sbjct: 440 KEITGPIIAITLVLLSVFVPVAFLPGSSGVLFRQFAVTISAAMVISAINALTLSPALCAV 499

Query: 823 IYD 825
           +  
Sbjct: 500 LMK 502



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/191 (10%), Positives = 59/191 (30%), Gaps = 8/191 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VIISAIAMLIY---IWIRFKWYF 692
                 + EI   S           ++ E+        +++    +  Y   + +   W  
Sbjct: 835  EAIAAMEEIGAASMPNGFAYEWTGMASEVKSSAGQAGIVLGFALLFAYLFLVALYESWNV 894

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +G + +++  +   +    + G   ++     ++ LI  +  + +++ +     +    
Sbjct: 895  PVGVMLSVVAAVMVAIFGVWVAGSSVDVYVQIGIVVLIALAAKNAILIVEFA---LLRLG 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
               S  +       E     + TS A    ++P+    G    S    +   +      S
Sbjct: 952  EGKSIEEAAVLGAQERFRPVMMTSFAFIAGLVPLVTASGPGADSM-FAVGVPVFAGMIGS 1010

Query: 813  IFIAAPILLFI 823
              I   ++  +
Sbjct: 1011 AVIGVILIPLL 1021


>gi|254712167|ref|ZP_05173978.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M644/93/1]
 gi|254715238|ref|ZP_05177049.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M13/05/1]
 gi|261216959|ref|ZP_05931240.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M13/05/1]
 gi|261319829|ref|ZP_05959026.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M644/93/1]
 gi|260922048|gb|EEX88616.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M13/05/1]
 gi|261292519|gb|EEX96015.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M644/93/1]
          Length = 1074

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/547 (11%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLTLTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMVLAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 74/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +   +                    +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMVQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG-- 791
              + +++ +  ++        +           +     + TS A  + ++P+ +  G  
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 792  -SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +   +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMVLAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|108762552|ref|YP_628375.1| HAE1 family efflux transporter [Myxococcus xanthus DK 1622]
 gi|108466432|gb|ABF91617.1| efflux transporter, HAE1 family, inner membrane component
           [Myxococcus xanthus DK 1622]
          Length = 1046

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 73/618 (11%), Positives = 161/618 (26%), Gaps = 51/618 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G +       P+  ++R+PS  P               + +    
Sbjct: 8   RPVFAWVIAIFIVLAGAISI-----PRLPIERYPSIAPP-------------SVTITATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L            S      +I ++FA     +     +  
Sbjct: 50  PGATPAAMNDSVVSLIERGLSGVKNILYFESSSDTSGIAQIVVTFAPGTDPDLAQVDIQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V S+L    ++  L   T     ++ S            E    + R  ++ +   
Sbjct: 110 RLKTVESRLPQMVRQLGLQVETTTTNFLLFSTLVSSDGRYDEAELGDFLSRNVVEDLRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP RL     +  +++      N        G        
Sbjct: 170 PGVGRVQLF-TPARALRVWLDPERLISHGISVDEVAAAIRAQNAEASPGRLGDMPAVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                      I                 +       
Sbjct: 229 RVTTPLMLQGQL-------------LDVADFERVIIRANPDGSNVLLKELAKVELGPQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T E      A L           +          
Sbjct: 276 ASSTRQNGKNAATFGVQLAPGANALDTSERIRERMADLSRAFPAGVEYTIPYDAAPFVRV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+++ +   ++ L+      + ++ T A++   G ++ + ++
Sbjct: 336 SIQKVVQTFFEAMLLVFAVMYLFLQSVRYTLIPAIVAPIALLGTFAVMLASGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERLMAEEGLSPLEATKKAMKEITGAVIGITLVLTSVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + F     G   R F++ M +SIL S F A+++  A+   +           R       
Sbjct: 456 MAFATGSVGTIYRQFSLAMAVSILFSAFLALTLTPALCATLLRPVEPGHAGKRRGFFGGF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           +       R        +++ ++ ++      G  +  + +G + + V
Sbjct: 516 NRLLERVTGRYANWTRAIVGRLGRAFFAYAVVVAMVALAFWRLPGAFFPEEDQGFLNVSV 575

Query: 584 LANRPVDLSVVRSNLESL 601
                       S L  L
Sbjct: 576 QLPSDATAERTNSVLGEL 593



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 75/204 (36%), Gaps = 10/204 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI- 684
             S      +  + +     V  +   +         +++++     +++    M +++ 
Sbjct: 301 DTSERIRERMADLSRAFPAGVEYTIPYDAAPFVRVSIQKVVQTFFEAMLLVFAVMYLFLQ 360

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            +R+    A+ A   L      T       G   N+  +  ++  IG  V+D +VV + +
Sbjct: 361 SVRYTLIPAIVAPIAL----LGTFAVMLASGFSINVLTMFGMVLAIGIIVDDAIVVVENV 416

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPM 801
                +    +S  +   K++ E  G  +  ++      +PMA   G    I   F++ M
Sbjct: 417 --ERLMAEEGLSPLEATKKAMKEITGAVIGITLVLTSVFIPMAFATGSVGTIYRQFSLAM 474

Query: 802 AFGIVVAASSSIFIAAPILLFIYD 825
           A  I+ +A  ++ +   +   +  
Sbjct: 475 AVSILFSAFLALTLTPALCATLLR 498



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 70/200 (35%), Gaps = 8/200 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-GIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G      L      + + +S + + + +   ++ W   
Sbjct: 833  DAMAEMERIAGELPPGFAVEWTGLSYQERLSGSEAPILLALSMLVVFLVLAALYESWSIP 892

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  +  + L +   L      G+  ++     ++T+IG S  + +++ +  +   +L   
Sbjct: 893  LSVMLVVPLGLIGALAAVMSRGLMNDIFFKVGLITIIGLSAKNAILIVEFAK---QLEEQ 949

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAAS 810
              S      ++        + TS+A  + V+P+ V  G       +    +  G+V    
Sbjct: 950  GRSPLQAAVEAARLRFRPILMTSLAFALGVVPLVVASGASAETQRAIGTGVFGGMVSGTV 1009

Query: 811  SSIFIAAPILLFIYDWRAKN 830
             +IF+     + +     + 
Sbjct: 1010 LAIFLVPAFYVAVRSLLKRR 1029


>gi|17548891|ref|NP_522231.1| transporter lipoprotein transmembrane [Ralstonia solanacearum
           GMI1000]
 gi|17431141|emb|CAD17821.1| probable transporter lipoprotein transmembrane [Ralstonia
           solanacearum GMI1000]
          Length = 1405

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 70/546 (12%), Positives = 169/546 (30%), Gaps = 40/546 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ +I   GL+           +  FP                     L   
Sbjct: 385 RKPIPSILLFILITVAGLVS-----FRMLSIQNFPDIDFPAV---------SVTATLPGA 430

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    +   + F   +  +   + V   +  
Sbjct: 431 TPSQMETEVTRKVEDSIASIGAIKHISSTINDGSSTTMVEFQLEKDVQEAVNDVRDAVSR 490

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  D ++ ++   T   + ++            A + S  +      ++       
Sbjct: 491 IRAQLPSDVQEPVISRVTFASMPVLTYAVQATG--MDAEDLSWYVDNTVNKRLLSVRGVA 548

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  + DP RL+ L  T A++S           G    +     +     
Sbjct: 549 KVTRQGGADREVRVQLDPVRLQALNVTAAEISVQLRGMQQEAPGGRGNIGGQEQAVRTLG 608

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   E+                      +       RR       ++    A      
Sbjct: 609 TVKSAAEL--------------------ARMDIPLSDGRRIRLSDVADVRDTAAEPRQMA 648

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +           S     +      A L+A    +++       V     +   
Sbjct: 649 LLEGKPVVSFQVFRSRGASEISVAQDVRAAIAGLQAERPNVRVTE-VYNLVKPVSDAYRA 707

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +   V+  ++ L++I T A + +LG TL   ++  + 
Sbjct: 708 SMHALYEGAILAVLVVWLFLRDWRATFVSAVALPLSIIPTFAAMQMLGFTLNGVTLLALT 767

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  +  F +           +  +++T +   +   F G
Sbjct: 768 LVVGILVDDAIVEVENIVRHLRNGKPPFEAAMEAAQEIGLAVIATSLTLVAVFLPTAFMG 827

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F  T  +++L S+  A  +   M  ++++ ++  + D   ++R+       
Sbjct: 828 GISGKFFRQFGWTASIAVLASLLVARLLTPMMAAYLLKPQREGNRDGWIMTRYLRAARWC 887

Query: 539 AIQFMR 544
                R
Sbjct: 888 LAHPWR 893



 Score = 85.9 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 56/161 (34%), Gaps = 6/161 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +A+L+       W     +   L L I  T     + G   N   + A+  ++G  V
Sbjct: 715 GAILAVLVVWLFLRDWRATFVSAVALPLSIIPTFAAMQMLGFTLNGVTLLALTLVVGILV 774

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +V  + +   ++         +   ++  E     + TS+      LP A  GG   
Sbjct: 775 DDAIVEVENI---VRHLRNGKPPFEAAMEAAQEIGLAVIATSLTLVAVFLPTAFMGGISG 831

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                F    +  ++ +   +  +   +  ++   + +  R
Sbjct: 832 KFFRQFGWTASIAVLASLLVARLLTPMMAAYLLKPQREGNR 872



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 70/193 (36%), Gaps = 4/193 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   V + V+   +       +        +  +EL    ++ + 
Sbjct: 1167 DRSRNVTISVGLEGGALGEVNQAVEALPSVRKLPPGVHRIASGDVEGMQELFGGFLLAMF 1226

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               + +   + + F  +   +  +  L L +    G  ALFG   +L A+  +L L+G  
Sbjct: 1227 AGVLCVYAVLVLLFHDFTQPVTILAALPLSVGGAFGLLALFGFSLSLPALIGLLMLMGIV 1286

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +     +      +S  + +  + ++     V T++A    ++PMA  G   
Sbjct: 1287 TKNSILLVE--YAIVARRDFGMSRTEALIDACHKRARPIVMTTVAMTAGMVPMA-LGLEG 1343

Query: 794  IGSFAIPMAFGIV 806
               F  PMA  ++
Sbjct: 1344 DAGFRAPMAVAVI 1356


>gi|253999405|ref|YP_003051468.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylovorus sp. SIP3-4]
 gi|253986084|gb|ACT50941.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylovorus sp. SIP3-4]
          Length = 1037

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 75/542 (13%), Positives = 159/542 (29%), Gaps = 32/542 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G   A+     +  + ++P   P   I                  
Sbjct: 8   RPIFASVLSIIIVLAGFAAAM-----KLPIAQYPQIAPPTVI---------VTATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + ++  +    +E  S ++       S        IT +F      +     V+  +  
Sbjct: 54  AETLSKTVAAPIEEQLSGVEGLLYFQSSADSSGTLTITATFETGTEVDQATFNVSNRVNI 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  +V        ++             +  S       +D++   +   
Sbjct: 114 ALPRLPEDVRRTGVVVQKRSNDILMALMLISPSKKYDPLFLSNYATLNVVDELKRIKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P R+ QL  TT  +S      N        G   +       Y
Sbjct: 174 DVTIFGSQDYSMRIWLKPDRMAQLGVTTTDISTAIQAQNAQYAAGKIGQEPVVGQQQLVY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +              +  +    I                 I     +     
Sbjct: 234 TVTAKGRL-------------VEPEQFADIIVRSNGPRGTLRLKDVATIELGAQMYNVRT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +   T          L+          +          S   
Sbjct: 281 SLDGQPGVGIPVFLQTGANALDTANAIKARMEELKQRFPEGVDYAIPYDTSDFVKASIEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  L+   ++ ++++ T A L + G ++   ++  +V
Sbjct: 341 VVKTLGEAMVLVVLVVFLFLQNWRATLIPIIAVPISLVGTFAGLWIFGFSINTLTLFAMV 400

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E I    + +  S   +      +    +    +      V + F 
Sbjct: 401 LSIGIVVDDAIVVLENIERLMSEEKLSPVNAAIKSMQQVSGAVVAIVLVLCAVFVPVAFM 460

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FA+T+ ++++IS   A+++  A+   I++    +S    P +R F     
Sbjct: 461 GGIAGELYRQFAVTVAVAVVISGIVALTLTPALCSLILKSVHEESRFFRPFNRGFEKLTN 520

Query: 538 IA 539
             
Sbjct: 521 FY 522



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 69/221 (31%), Gaps = 8/221 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               L       G     +     + +KI         Q T        +      I    
Sbjct: 811  NGLLAAKVLAGGAPGVSSGDAIKLVEKIAAQSLPDGYQMTWTGQAYQEKRTGSAAIYAFS 870

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             + I + + +  +F+ W   L  I  +   +   L    + G+  ++     ++TL+G +
Sbjct: 871  FAIIMVFLILAAQFETWALPLAVIMAVPFALAGALLAVLVRGMPNDIYFQIGLVTLVGLA 930

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +      +     +       ++        V TSMA  + ++P+ V+    
Sbjct: 931  AKNAILIVEFA---SQKLEEGLPVAQAAVEAARLRFRPIVMTSMAFVLGIVPL-VFASGA 986

Query: 794  IGSFAIPMAFGIVVAASSSIFIAA---PILLFIYDWRAKNA 831
              +    M  G+      + F+A    P+         K  
Sbjct: 987  GAAARRSMGTGVFGGMLLATFVATVFIPLFFTWLTGTQKRN 1027



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 2/102 (1%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L  I  + + +  T     +FG   N   + A++  IG  V+D +VV + +     
Sbjct: 363 WRATLIPIIAVPISLVGTFAGLWIFGFSINTLTLFAMVLSIGIVVDDAIVVLENI--ERL 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           +    +S  +   KS+ +  G  V   +      +P+A  GG
Sbjct: 421 MSEEKLSPVNAAIKSMQQVSGAVVAIVLVLCAVFVPVAFMGG 462


>gi|207724398|ref|YP_002254795.1| transporter protein [Ralstonia solanacearum MolK2]
 gi|206589618|emb|CAQ36579.1| transporter protein [Ralstonia solanacearum MolK2]
          Length = 1029

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 74/612 (12%), Positives = 185/612 (30%), Gaps = 43/612 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ +I   GL+           +  FP                     L   
Sbjct: 9   RKPIPSILLFILITVAGLVS-----FRMLSIQNFPDIDFPAV---------SVTATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    +   + F   +  +   + V   +  
Sbjct: 55  TPSQMETEVTRKIEDSIASIGAIKHITSTINDGSSSTIVEFQLEKDVQEAVNDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  D ++ ++   T   + ++            A + S  +      ++       
Sbjct: 115 IRAQLPSDVQEPVISRVTFASMPVLTYAVQATD--MDAEDLSWYVDNTVNKRLLSVRGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++  + DP RL+ L  T A++S           G    V     +     
Sbjct: 173 KVTRQGGVDREVRVQLDPVRLQALNVTAAEISVQLRGMQQEAPGGRGNVGGQEQAVRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   E+                      +       RR       ++    A      
Sbjct: 233 TVKSAREL--------------------AQMDIPLSDGRRIHLSDVADVRDTAAEPRQMA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +           S     E      A L+A    +++       V     + + 
Sbjct: 273 LLDGKPVVSFQVFRSRGASEISVAEGVRAAIARLQAERPNVRVTE-VYNLVKPVSDAYTA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +   V+  ++ L++I T A + +LG TL   ++  + 
Sbjct: 332 SMHALYEGAILAVLVVWLFLRDWRATFVSAVALPLSIIPTFAAMQVLGFTLNGVTLLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  +  F +           +  +++T +   +   F G
Sbjct: 392 LVVGILVDDAIVEVENIVRHLRNGKPPFEAALEAAQEIGLAVIATSLTLVAVFLPTAFMG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F  T  +++L S+  A  +   M  ++++ +   + D   ++ +       
Sbjct: 452 GISGKFFKQFGWTASIAVLASLLVARLLTPMMAAYLLKPRHEGNRDGWVMTHYLRAARWC 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                +           F      +          +    +Q+ V       ++  R   
Sbjct: 512 LAHPWKTGSMAT---AFFVASVAIIGLIPATFLPPEDWAQLQMTVEMPPGSTIAQTREAT 568

Query: 599 ESLQIGDISFQN 610
           E ++    + ++
Sbjct: 569 ERVRQVVKAHKD 580



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 6/161 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +A+L+       W     +   L L I  T     + G   N   + A+  ++G  V
Sbjct: 339 GAILAVLVVWLFLRDWRATFVSAVALPLSIIPTFAAMQVLGFTLNGVTLLALTLVVGILV 398

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +V  + +   ++         +   ++  E     + TS+      LP A  GG   
Sbjct: 399 DDAIVEVENI---VRHLRNGKPPFEAALEAAQEIGLAVIATSLTLVAVFLPTAFMGGISG 455

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                F    +  ++ +   +  +   +  ++   R +  R
Sbjct: 456 KFFKQFGWTASIAVLASLLVARLLTPMMAAYLLKPRHEGNR 496



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 70/193 (36%), Gaps = 4/193 (2%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                       +  A   V + V+   +       ++       +  +EL     + + 
Sbjct: 791 DRSRNVTISVGLEGGALGDVNQAVEALPSIRKLPPGVRRIASGDVEGMQELFGGFFLAMF 850

Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
              + +   + + F  +   +  +  L L +    G  ALFG   +L A+  +L L+G  
Sbjct: 851 AGVLCVYAVLVLLFHDFTQPVTILAALPLSVGGAFGLLALFGFSLSLPALIGLLMLMGIV 910

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
             + +++ +     +      +S  + +  + ++     V T++A    ++PMA  G   
Sbjct: 911 TKNSILLVE--YAIVAQRDHGMSRTEALIDACHKRARPIVMTTVAMTAGMVPMA-LGLEG 967

Query: 794 IGSFAIPMAFGIV 806
              F  PMA  ++
Sbjct: 968 DTGFRAPMAVAVI 980


>gi|145295777|ref|YP_001138598.1| preprotein translocase subunit SecF [Corynebacterium glutamicum R]
 gi|140845697|dbj|BAF54696.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 403

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 133/321 (41%), Gaps = 11/321 (3%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                      L      I F+        I+ +  + SI  +   G +  IDF+GG ++
Sbjct: 15  KPAKKRSWFNSLYTGDGGIDFIAKTKLWYWITGILLVISILFIAIRGFSLSIDFQGGTKM 74

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR----VLEM 637
            + A+      V  +  E+  I     Q         + +  +        +    + E 
Sbjct: 75  SMPASDYSTEQVEETFTEATGITPEIVQIVGSGDARTLEIHSERLSDEDVEKARLAIYEE 134

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
            +   +E  P         V       + ++ ++ +I   +   IYI  R +   A+ A+
Sbjct: 135 YQPLNSEGQPSPDAIGNSTVSESWGSTITKRMVLALIAFLVIAAIYIAFRLEREMAIAAM 194

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSI 755
             L++D     G +A+ G E +   V  +LT++ +S+ D VVV+D++R+N +    +   
Sbjct: 195 AALVVDGIVIAGIYAVIGFEVSPATVIGLLTVLTFSIYDTVVVFDKVRENTEGFEGSRRR 254

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAAS 810
           ++ +  + ++N+T  RS+ T++ + + ++ + V      G   +   A+    G++    
Sbjct: 255 TYAEQANLAVNQTFMRSISTTIISALPIIALMVVAVWMMGVGTLKDLALIQLIGVIEGTF 314

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
           SS+F+A P+L+ + +  +K  
Sbjct: 315 SSVFLATPLLVSLKNRLSKTK 335


>gi|466825|gb|AAA17100.1| secD [Mycobacterium leprae]
          Length = 394

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 137/304 (45%), Gaps = 18/304 (5%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE--- 599
           M  R     +  +    ++  +   G  +GIDFKGG  + +  +  V  +      +   
Sbjct: 1   MGRRRLWYSVGGVIVAVAVLSIIVRGFTFGIDFKGGTTVSMPVSPGVGGTGAIEVAQVAD 60

Query: 600 ----SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV----PLSTI 651
               +L     S        +  VR+  +   +   +++   +            P    
Sbjct: 61  VFKKTLGSDPESVVVVGNGASATVRISSKTLSNDQTSKLRNALFDAFGPKGADAKPSKQA 120

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            +   V      ++ +K ++ +++  + + +YI +R++ Y A+ A+TT+  D+T T G +
Sbjct: 121 ISDAAVSETWGGQITKKVVIALVVFLVLVGLYITVRYERYMAISALTTMCFDLTVTAGVY 180

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETL 769
           +L G E     V  +LT++G+S+ D V+V+D++ +N     +TT  +F +  + +IN+T 
Sbjct: 181 SLVGFEVTPATVIGLLTILGFSLYDTVIVFDKVEENTHGFQHTTRRTFAEQANLAINQTF 240

Query: 770 GRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            RS+ TS+ + + VL +      + G   +   A+    GI+V   SSIF A P+L+ + 
Sbjct: 241 MRSINTSLISVLPVLALMVVAVWLLGVGTLKDLALVQLVGIIVGTYSSIFFATPLLVTLR 300

Query: 825 DWRA 828
           +   
Sbjct: 301 ERTE 304


>gi|256043249|ref|ZP_05446186.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|265989676|ref|ZP_06102233.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           bv. 1 str. Rev.1]
 gi|263000345|gb|EEZ13035.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           bv. 1 str. Rev.1]
          Length = 1074

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/547 (11%), Positives = 153/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++G               +    I                 +       
Sbjct: 231 QIQLTLTTQGRLTGA-------------KQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYGTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGESLAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 42.0 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRK 746
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV    +R+  
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENVERVMA 423

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
                   +  ++   +++ E     +  ++      +P+A      G++   FA+ ++ 
Sbjct: 424 ET-----GLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSV 478

Query: 804 GIVVAASSSIFIAAPIL-LFIYDWRAKNARI 833
            ++++A +++ ++  +  +F+   + +   +
Sbjct: 479 AMLISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|170727905|ref|YP_001761931.1| preprotein translocase subunit SecD [Shewanella woodyi ATCC 51908]
 gi|169813252|gb|ACA87836.1| protein-export membrane protein SecD [Shewanella woodyi ATCC 51908]
          Length = 604

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 142/499 (28%), Positives = 251/499 (50%), Gaps = 29/499 (5%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNK 97
           +    I LGLDLRGG   +L+V+ +         + D +R F +++GI   ++ +   + 
Sbjct: 121 LGVRPIKLGLDLRGGVQFLLDVELEPVYQLHYDAFIDSVRQFARQQGIPRVTVHQSADSN 180

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           + ++  +S +K  +   +                   +  +    +   +  +   ++  
Sbjct: 181 VVINLVNSDYKGKVRQFIATNYPTWQ-----------VSNSDNSGLKADIKADEKIKIRD 229

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
             ++Q+++I+R RI+Q+GI+E+ +QR G HRI I+LPG QDP+  + ++G TA ++F++V
Sbjct: 230 LTVKQNLQIMRSRIEQLGITEALVQRQGEHRIRIELPGVQDPAAAKNVIGATASLAFYQV 289

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                        + LR+  GN   V  K  + G H+  A A+        VV       
Sbjct: 290 KQ-----EGSVNAQILRERSGNPVYVARKPVLGGEHIVDARASLGEMGMSEVVINLDRSG 344

Query: 278 G-----------ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           G            +       +        V     + +    Q+    +  I+G     
Sbjct: 345 GKFMSDFSRDNIGKPMATSYSEYSRDEQGKVRQTTDIISVATIQSQLGDRFSITGAGDYA 404

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA +LRAGS+   + IVEER +G  LG+++I  G  A+  G+ + +LFM + Y + 
Sbjct: 405 QAQQLALLLRAGSMTAPVTIVEERTIGPSLGAENIENGFSALALGMAMTLLFMGLWYRRL 464

Query: 387 GLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
           G VA+ ++  N+++   LL+L+  A LTLP IAG+VL +G+AVD+N+L+ ERI+++ ++ 
Sbjct: 465 GWVANVALLANMVILFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLQEG 524

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +    ++D GF  A +TIFD+N T +I  VVL+  G G ++GFA+T+GL +L SMFT I 
Sbjct: 525 RGFAHAIDRGFDSAVATIFDANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIF 584

Query: 506 IVRAMMIFIIRYKKMKSID 524
             RA++ +       + + 
Sbjct: 585 ASRALINWKYGRDFSRDVR 603



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 74/172 (43%), Gaps = 5/172 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  E I  G   + +     L+++ + ++      A   L+ ++    G  AL  
Sbjct: 429 TIGPSLGAENIENGFSALALGMAMTLLFMGLWYR-RLGWVANVALLANMVILFGLLALIP 487

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  ++       F   ID+  +  +     
Sbjct: 488 GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKLQE---GRGFAHAIDRGFDSAVATIFD 544

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +    I+ + +   G   I  FA+ +  G++ +  + IF +  ++ + Y  
Sbjct: 545 ANFTTMITAVVLYSIGNGPIQGFALTLGLGLLTSMFTGIFASRALINWKYGR 596


>gi|331008189|gb|EGH88246.1| multidrug efflux transporter [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 1048

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/519 (13%), Positives = 147/519 (28%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTVK---------ISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSANINLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+       
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVTGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     + Q S   +         S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 498



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 303 GEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 421 VMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 481 LLSVLVAMTLTPAL 494



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 88/266 (33%), Gaps = 13/266 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +    +  V  S    +  S     +   N +     +           
Sbjct: 778  RMQSADLNHWFVRNSNDEMVPFSSFARSSWSYGSPLLERYNGNSSLEVVGDPAPGVSSGT 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  ++K+    I    T Q+ ++        ++        +S + + + +   ++
Sbjct: 838  AMDAVEAIIKQLPEGIGYEWTGQSYQLRLSGAQAPMLY------AVSVLFVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L +   +    L G+  ++     +LT +G +  + +++ +  +   
Sbjct: 892  SWSVPFSVMLVVPLGVVGAVLATRLSGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK--- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S  +    +  + L   + TS+A    VLP+A+    G +   +    +  G+
Sbjct: 949  HLQEQGKSLHEATLLAARQRLRPILMTSLAFMFGVLPLALSTGAGSAGRNAIGTGVLGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A    IF+     + +    +++A
Sbjct: 1009 FSATVLGIFLVPLFFVEVRRRFSRSA 1034


>gi|320324370|gb|EFW80449.1| multidrug efflux transporter [Pseudomonas syringae pv. glycinea
           str. B076]
          Length = 1048

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/519 (13%), Positives = 148/519 (28%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTV---------KISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASINLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVTGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     + Q S   +         S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 498



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 303 GEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 421 VMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 481 LLSVLVAMTLTPAL 494



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 89/266 (33%), Gaps = 13/266 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +    +  V  S    +  S     +   N +     +           
Sbjct: 778  RMQSADLNHWFVRNSNDEMVPFSSFARSSWSYGSPLLERYNGNSSLEVVGDPAPGVSSGT 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  ++K+    I    T Q+ ++        ++        +S + + + +   ++
Sbjct: 838  AMDAVEAIIKQLPEGIGYEWTGQSYQLRLSGSQAPMLY------AVSVLFVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L +   +    L G+  ++     +LT +G +  + +++ +  +   
Sbjct: 892  SWSVPFSVMLVVPLGVVGAVLATRLSGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK--- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S RD    +  + L   + TS+A    VLP+A+    G +   +    +  G+
Sbjct: 949  HLQEQGKSLRDATLIAARQRLRPILMTSLAFMFGVLPLALSTGAGSAGRNAIGTGVLGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A    IF+     + +    +++A
Sbjct: 1009 FSATVLGIFLVPLFFVEVRRRFSRSA 1034


>gi|325679945|ref|ZP_08159514.1| export membrane protein SecF [Ruminococcus albus 8]
 gi|324108383|gb|EGC02630.1| export membrane protein SecF [Ruminococcus albus 8]
          Length = 324

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 11/300 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R     IS       I L F  GLN  I FKGG  L       +D + V+S +  +  
Sbjct: 12  GKRKVFYSISCGLIALFIILTFVLGLNVDIMFKGGTILTYSYTGDIDTNGVQSVVTDVLG 71

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE---MVKKKITEIVPLSTIQNTEIVGPK 660
              +    +        ++ Q   +     V +    V  +         +  +  V   
Sbjct: 72  QKSTVTKGENTATKQSTVKIQLSSTGGINEVKQNELQVALEEKFADNELALFESSDVKAS 131

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILDITKTLGFFALFGI 716
              +   K +V VI +A+  +IYI  RF+        + ++  L+ D+    G F +   
Sbjct: 132 NGLDFFLKCMVAVIFAAVVTIIYIGFRFRKIGGISAGIFSVVALLHDLCMVYGCFVICRF 191

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           + N   +A +LT++GYS+N  +++YDR+R+N  L  + +   +L++ S+ +TLGRS++T+
Sbjct: 192 DINANFMAVLLTILGYSINATIIIYDRIRENQNLKGSKLELEELVNLSVTQTLGRSIHTT 251

Query: 777 MAAFISVLPMA----VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   +++  +     ++G S I SFA P+  G++    SS  IA  + +       KN +
Sbjct: 252 VTTVMAMAVVCVVCTIYGVSSIISFAFPLIIGMLAGVYSSNCIAPTLWVMWRRHAEKNPK 311


>gi|241206042|ref|YP_002977138.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240859932|gb|ACS57599.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1066

 Score =  174 bits (441), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 146/544 (26%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P  +P + +                  
Sbjct: 10  RPVFAGVLSVLILVAGLI-----GLRALPISEYPEVVPPSIV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PSVIAETVATPLEEQINGVEGMLYMASQATSDGVLNVTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T       I++     D                  D++       
Sbjct: 116 AEPRLPAEVRSLGITTVKSSPNFIMVVNLVSDGNSHDITYLRNYATLNVKDRLARIAGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +     + +S      N      + G    +     Q 
Sbjct: 176 QVQVFGAGDYSMRVWIDPQKAAEHNLAASDISSAISSQNIQAAAGIIGASPSQPGVDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    A      
Sbjct: 236 NVNAQGRL-------------RTPEEFGNIIVKTGASGEITRLRDVARIELGAADYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 283 LLDGKPAVAVAVLQAPGSNAIEIADNVNATMDQLQLAMPEGVKYEIVYDTTKFVRASIEK 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G ++   S+ G+V
Sbjct: 343 VIDTLLEAIALVVLVVILFLQTWRASIIPLIAVPVSIIGTFAVMYVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEHGLSPRAATYKAMKEVSGPIVAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S +IS F ++++  A+   +++        +             
Sbjct: 463 GLSGQFYRQFALTIAISTVISAFNSLTLSPALAALLLKGHDQPKDWLTRFMDAIFGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 GFNR 526



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAIIMIVPMGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     + R+   ++    L   + TS+A  + V+P+ V    G  +  +  + +  G+
Sbjct: 960  -LEFEGRTPREAAIEASRLRLRPILMTSLAFIMGVVPLVVSTGAGAEMRAAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      IF+     + +  
Sbjct: 1019 IGVTFFGIFMTPVFYVLLRR 1038



 Score = 46.6 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---IAVPVSIIGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI---E 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R    K++ E  G  V  ++      +P+A      G     FA+ +A   V++A
Sbjct: 425 HGLSPRAATYKAMKEVSGPIVAIALVLVAVFVPLAFISGLSGQFYRQFALTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 FNS 487


>gi|307747301|gb|ADN90571.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni M1]
          Length = 1040

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 79/683 (11%), Positives = 185/683 (27%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGVIS-----LTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNDDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  +V
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  + +S         F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGESFKFVKKFNDFFDWS 521

Query: 537 CIAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    ++  R     +     + +I  L     N  +  +    + +        S
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLNKAVPNSLVPEEDQGLM-ISIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
                  K          V + +
Sbjct: 641 QIIAELNKKFAFDRNASSVFIGL 663



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALVLAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|294853332|ref|ZP_06794004.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. NVSL
           07-0026]
 gi|294818987|gb|EFG35987.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. NVSL
           07-0026]
          Length = 1074

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLTLTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|148554868|ref|YP_001262450.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Sphingomonas
           wittichii RW1]
 gi|148500058|gb|ABQ68312.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingomonas wittichii RW1]
          Length = 1036

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 76/686 (11%), Positives = 180/686 (26%), Gaps = 47/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +GL+       PQ  ++R+P+  P               + +    
Sbjct: 8   RPVFAWVIAIVIVLMGLIAI-----PQLPIERYPTIAPP-------------SITITATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L            +      +IT +F      E     V  
Sbjct: 50  PGATPRTMNDSVVGLIERELSSVKNLLYFESSTDTSGVAQITATFKPGTDPELAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+    +L    ++  +         +V+                    R   +++   
Sbjct: 110 RLKTAEPRLPQVVRQTGVFVEAASSGFLVMIAIESKDPHVDPGVLGDYAARNVSEELKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP++L     T + ++      N        G        
Sbjct: 170 PGVGRVQLFTS-ERAMRVWIDPAKLLSYSLTMSDVNAAIAAQNAQIAPGAIGSEPTVGEQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    ++                 +    +                 +       
Sbjct: 229 RVTIPLTVDGQL-------------QTPEEFRQIVLRANSDGSSVLLGDVARVELASQSF 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L           V          
Sbjct: 276 AASARTNGRPTAILAVQLAPGANAVATSRGVLERMDELSKSMPDGISYSVPFDTAPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+F+ +   ++ LV      + ++ TL+++ + G ++ + ++
Sbjct: 336 SIEKVVETLAEAMVLVFLVMFLFLQKFRYTLVPAIVAPIALLGTLSVMLVAGFSVNVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +           I    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERLMAEEGLSPRDATRKAMREITGAIIGITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      R F I+M +SIL S F A+S+  A+   I++              F  
Sbjct: 456 MAFASGSVGAIYRQFTISMAVSILFSAFLALSLTPALCATILKPVHGHEEKRGFFGWFDR 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLF-----THGLNYGIDFKGGIQLGVLANRP 588
             D +A  +       +  +         +L         L      +      + A + 
Sbjct: 516 KFDALAGGYQGWIARLLKRTGRMMASFAVVLVLLGVGFMNLPSAFLPEEDQGFYITAFQM 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
              + +    E++ + +   ++    ++      +    S A   ++  + K   +    
Sbjct: 576 PADATISRTSEAVSVLERHNKSRPAVRDTTAVQGFGFSGSGANAALVFTMLKDWKDRDGA 635

Query: 649 STIQNTEIVGPKISRELIRKGIVGVI 674
           +               +    ++ ++
Sbjct: 636 TAQSEVASAQQATGA-IREGVVMSLL 660



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 78/191 (40%), Gaps = 10/191 (5%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWY 691
             ++ + K + + +  S   +T         +++      +++  + M +++   R+   
Sbjct: 308 ERMDELSKSMPDGISYSVPFDTAPFVKISIEKVVETLAEAMVLVFLVMFLFLQKFRYTLV 367

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            A+ A   L      TL    + G   N+  +  ++  IG  V+D +VV + +     + 
Sbjct: 368 PAIVAPIAL----LGTLSVMLVAGFSVNVLTMFGMVLAIGIIVDDAIVVVENV--ERLMA 421

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
              +S RD   K++ E  G  +  ++      +PMA   GSV      F I MA  I+ +
Sbjct: 422 EEGLSPRDATRKAMREITGAIIGITLVLTAVFIPMAFASGSVGAIYRQFTISMAVSILFS 481

Query: 809 ASSSIFIAAPI 819
           A  ++ +   +
Sbjct: 482 AFLALSLTPAL 492



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 66/170 (38%), Gaps = 7/170 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             + ++ + +S   + + +   ++ W   L  I  + L +   L    + G+  ++     
Sbjct: 863  DEALMLLGLSMFVVFLVLAALYESWAIPLSVIMVVPLGLLGALAAVMVAGLSNDVFFKVG 922

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++T+IG S  + +++ +  +         +S  +    +    L   + TS+A  + V+P
Sbjct: 923  LITIIGLSAKNAILIVEFAK---AARDEGMSTIEATIHAARLRLRPIIMTSLAFTLGVMP 979

Query: 786  MAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + +  G       +    +  G++ A   +IF      + +     +  +
Sbjct: 980  LMLATGASKETQRAIGTGVFGGMISATLLAIFFVPVFFVVMMKLVERYKK 1029


>gi|150398587|ref|YP_001329054.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Sinorhizobium
           medicae WSM419]
 gi|150030102|gb|ABR62219.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium medicae WSM419]
          Length = 1048

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 75/687 (10%), Positives = 181/687 (26%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++       P   + ++P   P               + +  + 
Sbjct: 8   RPIFAWVVAIFIMIAGIIAI-----PLLPVSQYPDVAPP-------------QISINTNY 49

Query: 63  DDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTL 117
               +      +    ++  + ++       S     +  I  +F         +  +  
Sbjct: 50  PGASSQDTYQSVTRLIEDELNGVEGLLYFESSTSASGSVSIDATFQPGTDPSQASVDIQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q V  +L    ++  +         +++           AI     + R  + +I   
Sbjct: 110 RVQRVEPRLPDPVRQQGVQVDEAGAGFLLIISLTSTDGSMDAIGLGDYLSRNVLSEIQRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP ++  L  T A ++      N        G +    + 
Sbjct: 170 PGVGRAQLF-ATERSMRVWLDPDKMLGLNLTAADVTAAIQAQNAQIASGSIGAQPNPITQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K ++S                +    +                 +       
Sbjct: 229 QVTAPVVIKGQLS-------------SPEEFGAIVLRANADGSAVRLRDVARLEIGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L A         +          
Sbjct: 276 TFSTRLNGSPSAAIAVQLSPSGNAMSTSAAIKTRMDELAAFFPQGLEYSIPYDTSPFVAV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV +V+F+ +   ++ L+    + + ++ T A++  +G ++ + ++
Sbjct: 336 SIEKVLHTLVEAVGLVFLVMFLFLQNVRYTLIPTIVVPVALLGTCAVMLAMGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  +   +      +    +    +      + 
Sbjct: 396 FGMVLAIGILVDDAIIVVENVERIMSEEGLTPKDATRKAMKQITGAVIGITLVLASVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + FF G      R F++TM +SIL S   A+S+  A+             + K       
Sbjct: 456 MAFFPGAVGVIYRQFSLTMVVSILFSALLALSLTPALCASFLKQVPKGHHHAKRGFFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                              R  G  + I   + +        L             ++  
Sbjct: 516 NRGFDRTSHGYTRFVGSVIRRTGRFMIIYLILLAAMAWAFIRLPSSFLPDEDQGFVIVMM 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    +      E ++  +  F         +    +    S     +  +  K  +E  
Sbjct: 576 QLPSEATANRTTEVIEQTEKIFGQEPAVDTIVAINGFSFFGSGQNAGLAFVTLKDWSERD 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
             +  Q+          ++       +
Sbjct: 636 ADNAAQSIAGRATMAMSQIKDAISFAL 662



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 79/221 (35%), Gaps = 6/221 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    S +        +       G++++ +  ++    ++    P 
Sbjct: 260 VRLRDVARLEIGGESYTFSTRLNGSPSAAIAVQLSPSGNAMSTSAAIKTRMDELAAFFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            I K +  ++ +   + + +++  +   + L     + + +  T
Sbjct: 320 GLEYSIPYDTSPFVAVSIEKVLHTLVEAVGLVFLVMFLFLQNVRYTLIPTIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  V+D ++V + +     +    ++ +D   K++ +
Sbjct: 380 CAVMLAMGFSINVLTMFGMVLAIGILVDDAIIVVENV--ERIMSEEGLTPKDATRKAMKQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
             G  +  ++      +PMA + G+V      F++ M   I
Sbjct: 438 ITGAVIGITLVLASVFIPMAFFPGAVGVIYRQFSLTMVVSI 478



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/394 (9%), Positives = 116/394 (29%), Gaps = 18/394 (4%)

Query: 435  NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
               +  ++   +    +      RA   +         A       G G   GF+  +  
Sbjct: 623  LAFVTLKDWSERDADNAAQSIAGRATMAMSQIKDAISFALSPPAIQGLGTTGGFSFRLQD 682

Query: 495  SILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554
               +           ++    + K +  +    +     +   I  +             
Sbjct: 683  RAGLGEAALAEARDQLLGLASQSKILTGVRFEGMPDAAQVSVDIDREKANTFGVTFADIN 742

Query: 555  LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                 ++   + +        +          R     ++  N+ +   G +    F   
Sbjct: 743  STISTNLGSSYVNDFPNAGRMQRVTVQADETKRMQPADLLNLNVRNSNGGMVPLSAFANV 802

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP---------KISREL 665
            +      Q    +     R+        +    ++ ++      P         +  +E+
Sbjct: 803  EWVKAPTQTVGYNGYPAVRISGEAAPGYSSGDAIAEMERLVAQLPAGFGYEWTGQSLQEI 862

Query: 666  IRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
                   ++I+   +L+++    +   W   +  I  + L +   +    +  +  ++  
Sbjct: 863  QSGTQAPLLIALSCLLVFLCLAALYESWSIPVSVIMVVPLGVIGAVLAVTMRDMPNDVYF 922

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ +IG S  + +++ +  ++   L     S  D   ++ +      + TS+A  + 
Sbjct: 923  KVGLIAIIGLSAKNAILIIEFAKE---LRDQGKSLIDATLEAAHLRFRPILMTSLAFTLG 979

Query: 783  VLPMAVWGG---SVIGSFAIPMAFGIVVAASSSI 813
            VLP+A+  G       +    +  G++ A   +I
Sbjct: 980  VLPLAIATGASSGSQRAIGTGVMGGMISATVLAI 1013


>gi|281417623|ref|ZP_06248643.1| protein-export membrane protein SecF [Clostridium thermocellum
           JW20]
 gi|281409025|gb|EFB39283.1| protein-export membrane protein SecF [Clostridium thermocellum
           JW20]
          Length = 318

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 139/312 (44%), Gaps = 18/312 (5%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANRPV------ 589
                ++  R +   +S +  +  +  L   G  N  I F+GG Q+ +            
Sbjct: 1   MFNFDYVGKRKYFFILSTVLLLIGLVALIVRGGLNLDIQFRGGTQIEIEMENEDFDVIKA 60

Query: 590 --DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                              +F   + ++     +    G      R   +   K    V 
Sbjct: 61  ENIAKEAIGKSGIHVQKSYTFNPTNSDEAISFLVIKSSGKLTDDERNKVLDALKAEFNVK 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL----GAITTLILD 703
            +       V P I  EL+ KG++ V +S I +++YI IRF     L     A+  ++ D
Sbjct: 121 ENGEMRVRDVDPSIGAELLTKGLLAVALSLILLILYIGIRFNIMSGLLAGFTAVVAVLHD 180

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   +  +A+F I  N + +AAVLT++GYSVND +V+YDR+R+N +  +   S R +++ 
Sbjct: 181 VLMMVAVYAVFNIPVNESFIAAVLTILGYSVNDTIVIYDRIRENSR-ISRKDSIRTIVNN 239

Query: 764 SINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           SI +++ R++ TS+   ISV+ +  +    G   +  F  P+  G++    SSIFIA+P+
Sbjct: 240 SITQSMSRTINTSVTTLISVITVYAFAAYNGIGSMKEFTFPLIIGLICGTYSSIFIASPL 299

Query: 820 LLFIYDWRAKNA 831
              + + +AK  
Sbjct: 300 WELLKEKQAKRK 311


>gi|302341465|ref|YP_003805994.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfarculus baarsii DSM 2075]
 gi|301638078|gb|ADK83400.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfarculus baarsii DSM 2075]
          Length = 1047

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/679 (10%), Positives = 176/679 (25%), Gaps = 49/679 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  +I   GL+  L        + ++P   P               +V+    
Sbjct: 9   RPRLAVVISLVITLAGLIALL-----NISVAQYPKITPPE-------------IVVRATY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       + + +   E +   +     +    +T++F      +     V  
Sbjct: 51  PGASAEVVAQSVAAPIEAQVNGVEDMIYMTSTSGNDGSYSLTVTFDADANADIAQVNVLN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+   SKL  +     L         + +      +     +  S  +     D +   
Sbjct: 111 RLKQAESKLPNEVVAQGLTVRARSSDMLAIINFFSPKGTRDQLFLSNFVSINVQDALARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      +   +    DP RL  L  + + ++      N        G        
Sbjct: 171 NGVSDANIFGELSYSMRVWMDPERLAALGLSASDINQAIASQNIQAAAGALGSSPGPAGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +                      +                 +       
Sbjct: 231 QLQYPLRAKGRL-------------VTVEDFSNIVVRVNKDGGVLRLGDVARVELGAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L             +  +   T++        L           +          
Sbjct: 278 AGNNLLDGAPAVPLGIYQSSDANALETMDQVRAELERLARTFPDDIEYRLTMDATLFVRA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T  +   LV+ V F+ +   +  L+   +I +++I   A L  LG +  + ++
Sbjct: 338 TIHEIVLTLLMTFVLVVGVTFLFLQDWRATLIPTLTIPVSLIGAFAALLALGYSANIITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E ++   + +      +      +    I  + +  L   + 
Sbjct: 398 FALILAIGVVVDDAIVVVENVQRILDEERIDAKSATIKAMGQVTGPIIAATLVLLAMFLP 457

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           + F     G   + FA+T+  ++L+S   A+++  A+   I          R   +   +
Sbjct: 458 VAFLPGITGRLYQQFAVTICFAVLLSGVCALTLSPALCALILRPAAGGHQARRGPLGWFE 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                              R       ++++ +   +  + +       + +G   L + 
Sbjct: 518 ALLGRSRNGYVRGAGWLAGRRALTLGLLALVLTGGYLLFVGSPTSFLPDEDQGLFYLEIQ 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 L         +              N   R             V+ +       
Sbjct: 578 LPPTASLERTSLVSRQIHAAIKDTPGIAAVTNINGRSALSGTGENLGRAVIMLKPWDERT 637

Query: 645 IVPLSTIQNTEIVGPKISR 663
                     + V  +++ 
Sbjct: 638 ADDEQLPAIIKAVQARVAA 656



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 78/255 (30%), Gaps = 10/255 (3%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G + +   +     LS + S   +     I   N                   A   +  
Sbjct: 785  GQLYVRSDSGAMTPLSTLVSLKITTGPQVIYRYNQFPSTQINGAAAEGKSSGQAMDAMAA 844

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            + ++ + +               +   + +   +  ++      L  +     W   L  
Sbjct: 845  LARRTLPQ-GYGFDWSGLSYQEQQAGGQTVAIFLTALLFGY---LFLVAQYESWSIPLTV 900

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            I ++ + +   L    +FG   ++     ++ L+G +  + +++ +  +           
Sbjct: 901  ILSISVAVLGALAGLFIFGRALSIYGQIGLVLLLGLASKNAILIVEFAK---TSREAGAP 957

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
                            + T+ +  + V P+ V    G +      + + FG++ A    I
Sbjct: 958  IVQAALDGARVRFRAVLMTAFSFILGVFPLVVATGAGAASRRDIGVTVFFGMLAATMLGI 1017

Query: 814  FIAAPILLFIYDWRA 828
            F+  P+ + +  WR 
Sbjct: 1018 FLIPPLFVVLQGWRE 1032



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 83/234 (35%), Gaps = 12/234 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q    +          L   Q    +++     +    +++    P     
Sbjct: 266 DVARVELGAQSYAGNNLLDGAPAVPLGIYQSSDANALETMDQVRAELERLARTFPDDIEY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +      R  I + ++ ++++ + ++   ++    W   L    T+ + +       
Sbjct: 326 RLTMDATLFVRATIHEIVLTLLMTFVLVVGVTFLFLQDWRATLIPTLTIPVSLIGAFAAL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINET 768
              G   N+  + A++  IG  V+D +VV +   R+    ++   S + +     ++ + 
Sbjct: 386 LALGYSANIITLFALILAIGVVVDDAIVVVENVQRILDEERIDAKSATIK-----AMGQV 440

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
            G  +  ++      LP+A   G        FA+ + F ++++   ++ ++  +
Sbjct: 441 TGPIIAATLVLLAMFLPVAFLPGITGRLYQQFAVTICFAVLLSGVCALTLSPAL 494


>gi|218891356|ref|YP_002440223.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas aeruginosa LESB58]
 gi|222110362|ref|YP_002552626.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Acidovorax ebreus TPSY]
 gi|218771582|emb|CAW27354.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas aeruginosa LESB58]
 gi|221729806|gb|ACM32626.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax ebreus TPSY]
          Length = 1058

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 62/525 (11%), Positives = 147/525 (28%), Gaps = 40/525 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +        Q  L  +P   P               + +    
Sbjct: 10  RPIFAIVLSVLMLIAGAIS-----YFQLPLSEYPQVTPPT-------------VQVTASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +    +  L   +   EG+     +   +    +T+SF      +    +V  
Sbjct: 52  PGANPQVIADTVASPLEQAVNGVEGMMYMQSQMSTDGRMVLTISFEQHIDPDVAQIQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +VT       +++            +  S   +    D++   
Sbjct: 112 RVSRALPRLPPEVQRIGVVTDKTAPDILMVVHMLSPGDRYDPLYVSNYAMLNVRDELARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP ++     T + +       N        G +    S 
Sbjct: 172 PGIANVIIGGEGEYAMRVWLDPEKVASRGMTASDVVAAIREQNVQVAAGSIGQQPNA-SA 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V     ++                +    +       +         +       
Sbjct: 231 AFQVSVNALGRLTTEE-------------QFGDIVIKAGANGQVTRLRDVARLELGSDNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L+A         +          
Sbjct: 278 TMRGQLDGENAVGLQILMTPGSNALDTSSAVRATMERLQAKFPEGIEYKIAYDPTVFVRA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+ + +   +  ++   ++ ++++ T A++ + G +L   S+
Sbjct: 338 SLQSVAVTLLEAILLVVIVVVLFLQSWRASIIPLIAVPVSLVGTFAVMHMFGFSLNTLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV- 476
            G+VL IG+ VD  I+V E +       +S   +           I           +  
Sbjct: 398 FGLVLSIGIVVDDAIVVVENVERHMALGESPKDAARKAMDEVTGPILAITSVLAAVFIPS 457

Query: 477 --LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
             L    G   R FA+T+  S ++S   ++++  A+   +++   
Sbjct: 458 AFLSGLQGEFYRQFALTIAFSTILSAINSLTLSPALAAILLKPHH 502



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 48/145 (33%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +    + +   +    L G + N+      + L+G +  + +++ +  R   
Sbjct: 903  SWSLPFAVLLIAPMALLSAIAGVWLSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR--- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
               +        + ++    L   + TS A    V+P+ +    G  +  +  I +  G+
Sbjct: 960  AKESEGADPLAAVLEAARLRLRPILMTSFAFIAGVVPLVLASGAGAEMRHAMGIAVFAGM 1019

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      + +     + +     + 
Sbjct: 1020 LGVTVFGLVLTPVFYVVVRKLALRR 1044



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 97/258 (37%), Gaps = 16/258 (6%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I +   AN  V      + LE            DGE    +++   PG +   T    
Sbjct: 249 GDIVIKAGANGQVTRLRDVARLELGSDNYTMRGQLDGENAVGLQILMTPGSNALDTSSAV 308

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-----AMLIYIWIRFKWY 691
               +  +      I+      P +    +R  +  V ++ +      +++ +     W 
Sbjct: 309 RATMERLQAKFPEGIEYKIAYDPTV---FVRASLQSVAVTLLEAILLVVIVVVLFLQSWR 365

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            ++  +  + + +  T     +FG  F+L  ++    +   S+   V     + +N++ +
Sbjct: 366 ASIIPLIAVPVSLVGTFAVMHMFG--FSLNTLSLFGLV--LSIGIVVDDAIVVVENVERH 421

Query: 752 TT-SISFRDLIDKSINETLGRSV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
                S +D   K+++E  G  +  TS   A FI    ++   G     FA+ +AF  ++
Sbjct: 422 MALGESPKDAARKAMDEVTGPILAITSVLAAVFIPSAFLSGLQGEFYRQFALTIAFSTIL 481

Query: 808 AASSSIFIAAPILLFIYD 825
           +A +S+ ++  +   +  
Sbjct: 482 SAINSLTLSPALAAILLK 499


>gi|150025014|ref|YP_001295840.1| multidrug resistance protein precursor AcrB/AcrD/AcrF family
           protein [Flavobacterium psychrophilum JIP02/86]
 gi|149771555|emb|CAL43026.1| Probable multidrug resistance protein precursor. AcrB/AcrD/AcrF
           family protein [Flavobacterium psychrophilum JIP02/86]
          Length = 1055

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 68/592 (11%), Positives = 158/592 (26%), Gaps = 46/592 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  MI  +G+L      +    + + PS  P               + +    
Sbjct: 8   RPVLSIVISLMIVLLGVLA-----MTSLPVTQLPSISPPK-------------VNVAASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
               N  L +     L   +    G+   +     +    I + F         +  +  
Sbjct: 50  PGANNELLIKAVVIPLERAINGVPGMKYIASDAGNDGEASIQVIFNLGTDPNQASINIQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V +KL     +  +  T E+  +++                        I ++   
Sbjct: 110 RVASVVNKLPPLVVREGVKITREESNNLMYINLYSKDPTMDQKFLFNFADINLISELKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P R+     + A++       +        G    + S 
Sbjct: 170 NGVGVADIVGNREYAMRVWLKPDRMLAYKISAAEVMEALSQQSLEAAPGKTGESSGKRSQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y+++     +                +    I                NI    ++ 
Sbjct: 230 AFEYVLKYSGRFTTQE-------------QYGNIIIKSSPNGEILRLKDVANIEFGSSMY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADL 356
                L                + +  I+     L  + +          +         
Sbjct: 277 DIYSNLNGNPSAAITIKQSYGSNASQVIKDVKARLEEIKKESFPKGIDYEISYDASKFLD 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F+ +   +  ++   ++ ++++ T A ++  G  + L +
Sbjct: 337 ASIEKVLHTLIEAFILVGLVVFLFLGNWRSTIIPAIAVPVSLVGTFAFMNFFGININLVT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +  +  +       +           I           +
Sbjct: 397 LFALVLAIGVVVDDAIVVIEAVHAKMEEEHLGPLKATKKAMHEISGAIIAITFLMAAVFI 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINP 527
            + F  G      R F+ITM   I++S   A+++  A+   +++      +K   ++   
Sbjct: 457 PVAFMSGPVGIFYRQFSITMATGIILSGIVALTLTPALCAMMLKKTHGVARKKTPLNNFL 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                                    SI F            LN  +      
Sbjct: 517 DGFNHKFEQLTGKYQGVLGKIVNKRSITFIAFIGFCTGIFFLNNSLPTGFIP 568



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 85/234 (36%), Gaps = 6/234 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              S      S  N +      ++  Y    S     V   +++   E  P         
Sbjct: 270 EFGSSMYDIYSNLNGNPSAAITIKQSYGSNASQVIKDVKARLEEIKKESFPKGIDYEISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
              K     I K +  +I + I + + +++    W   +     + + +  T  F   FG
Sbjct: 330 DASKFLDASIEKVLHTLIEAFILVGLVVFLFLGNWRSTIIPAIAVPVSLVGTFAFMNFFG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I  NL  + A++  IG  V+D +VV + +    K+    +       K+++E  G  +  
Sbjct: 390 ININLVTLFALVLAIGVVVDDAIVVIEAVH--AKMEEEHLGPLKATKKAMHEISGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +       +P+A   G V      F+I MA GI+++   ++ +   +   +   
Sbjct: 448 TFLMAAVFIPVAFMSGPVGIFYRQFSITMATGIILSGIVALTLTPALCAMMLKK 501



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 80/250 (32%), Gaps = 12/250 (4%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +  V  S      +   + +I+  N         +         A   + ++ +KK+   
Sbjct: 796  DEMVPFSAFMKMEKVYGLSEITRHNMYNASEISGQSAPGYSSGQAIKAIQDVAQKKLPR- 854

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
                              E     I   +I  + + + +  +++ +      I +L   I
Sbjct: 855  GYGIDWAGISKDEVGRGNE----AIYIFLICLLFVYLVLAAQYESFVLPFAVILSLPAGI 910

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              +    ++ G+E N+ A  A + LIG    + V++ +     ++ +    +  +   + 
Sbjct: 911  FGSFLLLSMCGLENNIYAQVAFVMLIGLLGKNAVLIVEFA---VQKHEAGATILEAAMEG 967

Query: 765  INETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                    + TS A    ++P+A+  G       +       G+++     + +   +  
Sbjct: 968  AKVRFRPILMTSFAFIAGLVPLALASGPGKIGNRTIGTAALGGMLLGTVIGVLLIPGLYY 1027

Query: 822  FIYDWRAKNA 831
                  AK  
Sbjct: 1028 IFGSIAAKIK 1037


>gi|15597690|ref|NP_251184.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexF [Pseudomonas aeruginosa PAO1]
 gi|107101940|ref|ZP_01365858.1| hypothetical protein PaerPA_01002987 [Pseudomonas aeruginosa PACS2]
 gi|116050438|ref|YP_790743.1| RND multidrug efflux transporter MexF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296389087|ref|ZP_06878562.1| RND multidrug efflux transporter MexF [Pseudomonas aeruginosa PAb1]
 gi|313107388|ref|ZP_07793579.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexF [Pseudomonas aeruginosa 39016]
 gi|9948546|gb|AAG05882.1|AE004676_14 Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexF [Pseudomonas aeruginosa PAO1]
 gi|115585659|gb|ABJ11674.1| RND multidrug efflux transporter MexF [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310880081|gb|EFQ38675.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexF [Pseudomonas aeruginosa 39016]
          Length = 1062

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 67/608 (11%), Positives = 158/608 (25%), Gaps = 31/608 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G +        Q  +  +P  +P   +                 
Sbjct: 9   QRPIFAAVLSLLILIGGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +N   +V   + 
Sbjct: 55  NPKVIGETVASPLEQAITGVENMLYMSSQSTSDGKLTLTITFALGTDLDNAQVQVQNRVT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               KL  +  +  +          ++            +  S   +    D++   +  
Sbjct: 115 RTEPKLPEEVTRLGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAVLNVKDELARLDGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++     T   +       N        G          Q
Sbjct: 175 GDVQLFGLGDYSLRVWLDPNKVASRNLTATDVVNAIREQNRQVAAGTLGAPPAPSDTSFQ 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +    I                 +          
Sbjct: 235 LSINTQGRLVTEE-------------EFENIIIRAGANGEITRLRDIARVELGSNQYALR 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L            +   +            A L+          +         GS  
Sbjct: 282 SLLNNKPAVAIPIFQRPGSNAIEISNLVREKMAELKHSFPQGMDYSIVYDPTIFVRGSIE 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ +++I T A++ +LG +L   S+ G+
Sbjct: 342 AVVHTLFEALVLVVLVVILFLQTWRASIIPLAAVPVSLIGTFAVMHMLGFSLNALSLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +            +           I  + +      +   F 
Sbjct: 402 VLAIGIVVDDAIVVVENVERNIGLGLKPVEATKRAMREVTGPIIATALVLCAVFIPTAFI 461

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R FA+T+ +S +IS F ++++  A+   +++         +      L    
Sbjct: 462 SGLTGQFYRQFALTIAISTVISAFNSLTLSPALAAVLLKGHHEPKDRFSVFLDKLLGSWL 521

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                        G     +           +  G+               V     +  
Sbjct: 522 FRPFNRFFDRASHGYVGTVNRVLRGSSIALLVYGGLMVLTYFGFSSTPTGFVPQQDKQYL 581

Query: 598 LESLQIGD 605
           +   Q+ D
Sbjct: 582 VAFAQLPD 589



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 69/237 (29%), Gaps = 9/237 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      D            L         S      +E + K+               
Sbjct: 816  KVSDTSGPDRVMHYNGFITAELNGAPAAGYSSGQAQAAIEKLLKEELPNGMTYEWTELTY 875

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                     +    V  +   +A L+       W   L  I  + + +   +    L G 
Sbjct: 876  QQILAGNTAL---FVFPLCVLLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVILAGS 932

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + N+     ++ L+G +  + +++ +  +         +     + ++    L   + TS
Sbjct: 933  DNNIFTQIGLIVLVGLACKNAILIVEFAKD---KQEEGMDRVAAVLEACRLRLRPILMTS 989

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +A  + V+P+ +    G  +  +  + +  G++      + +     + I  +    
Sbjct: 990  IAFIMGVVPLVISTGAGAEMRHAMGVAVFSGMIGVTFFGLLLTPVFYVLIRRFVENR 1046



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 9/148 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     + G   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLAAVPVSLIGTFAVMHMLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIG 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP--MAVWG--GSVIGSFAIPMAFGI 805
           L        +   +++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 LGLK---PVEATKRAMREVTGPIIATAL-VLCAVFIPTAFISGLTGQFYRQFALTIAIST 480

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNAR 832
           V++A +S+ ++  +  + +        R
Sbjct: 481 VISAFNSLTLSPALAAVLLKGHHEPKDR 508


>gi|260564460|ref|ZP_05834945.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           bv. 1 str. 16M]
 gi|260152103|gb|EEW87196.1| hydrophobe/amphiphile efflux-1 family protein [Brucella melitensis
           bv. 1 str. 16M]
          Length = 1074

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 62/547 (11%), Positives = 153/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVNDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++G               +    I                 +       
Sbjct: 231 QIQLTLTTQGRLTGA-------------KQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYGTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 42.0 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRK 746
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV    +R+  
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENVERVMA 423

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
                   +  ++   +++ E     +  ++      +P+A      G++   FA+ ++ 
Sbjct: 424 ET-----GLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSV 478

Query: 804 GIVVAASSSIFIAAPIL-LFIYDWRAKNARI 833
            ++++A +++ ++  +  +F+   + +   +
Sbjct: 479 AMLISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|159026054|emb|CAO86295.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 310

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 70/307 (22%), Positives = 141/307 (45%), Gaps = 6/307 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
             F +       +  +    +G  +   I    +      +        IQ+ +   +  
Sbjct: 1   MAFRVTKQRKFWWTVSSLLTIGSILAMVISWFTIQAPLRPSLDFVGGTRIQIELACAKKN 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                 +  E   I D         +            ++A+ +  +++     +I    
Sbjct: 61  TCEKPLTTAEVQGILDEEGLGNSSVQVLDKYTLSVRTKTLAEEQRTKLLDTLNQKIGAFD 120

Query: 650 TIQNT-EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
              +  + VGP I +EL R G + +++S   + +Y+  RF+  +A  AI  L+ D+  TL
Sbjct: 121 PETSQIDTVGPTIGQELFRSGFLALLVSFFGIAVYLSFRFQRDYAFFAIVALLHDVLITL 180

Query: 709 GFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           G FA+ G+    E +   + ++LT++G+SVND VV+YDR+R+N    T  +S  +++D +
Sbjct: 181 GVFAVLGLIAGVEVDSLFLVSLLTIVGFSVNDTVVIYDRVRENFA-NTPELSVDEIVDNA 239

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +++TL RS+ T++   + ++ + ++GG+ +  FA+ +  G V  A SSIFIA+ +L +  
Sbjct: 240 VSQTLTRSINTTLTTLLPLVAIFLFGGTTLKYFALALIIGFVAGAYSSIFIASTLLAWWR 299

Query: 825 DWRAKNA 831
               +  
Sbjct: 300 GRSHRTK 306


>gi|84624852|ref|YP_452224.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368792|dbj|BAE69950.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 1041

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 77/678 (11%), Positives = 186/678 (27%), Gaps = 43/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P              ++      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVNVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  SR  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDGLAGIEGISTIEAHSRNGSSDISIEFVQSRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARAPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARDLTVADVEAALQNENVEVPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    +       
Sbjct: 234 YLKPED-------------------FAKLPLNKGEGGYVVRLGDVARVELSSSERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +       A   A  ++          V          +    
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVARKARARAIEVQKSLPQGTNIFVAFDTTTFIDAAVERV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LVL+V+++ +   +  L+   ++ + +I +   L     ++ L ++  +VL
Sbjct: 335 YHTLVEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIASFIALYAFDFSINLLTLLALVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E I+      +    +   G  +    +  +    +   V + F  G
Sbjct: 395 CIGLVVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFVPVGFLQG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP---- 535
                 R  A+ +  ++ IS F A+++   M   ++R       +         +     
Sbjct: 455 NTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRAHGQAKPNRFHQWFDGRMQAVSG 514

Query: 536 -DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +++    R W   + +L ++ +   L     +     +      ++ + P      
Sbjct: 515 AYGRSLERHVHRTWVFALLMLLALGASAWLMGRIPSEVAPAEDRGNFQIMIDGPEGAGFD 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +  +  Q+ DI       +K  +      PG   +   +         +     T   T
Sbjct: 575 YTVGQMHQVEDILRPFVGPDKPIVRANPRVPGSFGSSEEMHTGRVSVFLQDWEKRTRPTT 634

Query: 655 EIVGPKISRELIRKGIVG 672
           E+      +  +  G+  
Sbjct: 635 EVADEVQQKLNVLSGVRA 652



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 7/158 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 859  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     S    I  S +  L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDEGRSVHAAIVASASVRLRPILMTSIATVVGAIPLVV 975

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             GG       +  + + FG+ ++   S+++       I
Sbjct: 976  AGGPGSASRATIGVVVIFGVSLSTVLSLYVVPAFYSLI 1013



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL    T+ + +  +      F    NL  + A++  IG  V+D +VV + +    + 
Sbjct: 357 RAALIPAVTVPVCLIASFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENI---QRR 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                       +   +     + T+       +P+    G+    F
Sbjct: 414 IDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFVPVGFLQGNTGRLF 460


>gi|329114850|ref|ZP_08243606.1| Multidrug resistance protein MexB [Acetobacter pomorum DM001]
 gi|326695747|gb|EGE47432.1| Multidrug resistance protein MexB [Acetobacter pomorum DM001]
          Length = 1051

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/546 (11%), Positives = 146/546 (26%), Gaps = 41/546 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L        +  + ++PS  P               + + V  
Sbjct: 10  RPIFAWVISLIIMLVGGLSIF-----RLPISQYPSIAPP-------------QIAISVTY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        I   S    Q +I L+FA     +    +V  
Sbjct: 52  PGASADTVNDTVVRPILQQMFGLDHLEYISAQSYASGQMEIDLTFAQGTDPDIAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  +     L  T   +  +++          +  + +  +     D +   
Sbjct: 112 KLQLAQPKLPTEVTAQGLSITKAVKNFMLVVAFISTDGSMNGGDIADYVASNISDPLSRV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +       N        G        
Sbjct: 172 SGVGDHTLFGS-EYSMRIWMDPAKLFNYGLTVRDVETAIQNQNIQLSSGELGGLPATKGI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     ++                +    +   +    +        +       
Sbjct: 231 RLDATIIGPQRLT-------------SPEEFERILLKVQPDGSQVRIRDIAKVELGPQTY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T          L     P    +           
Sbjct: 278 NTNSYYNNMPASGMALKLAPGANQIATEAAVRAQLHELEQFFPPGLKTVYPLDTEPFITL 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV +V+ + +   +  L+   ++ + ++ T  LL+LLG ++   ++
Sbjct: 338 SIGEVVETLLEAIGLVFLVMLVFLQNFRATLIPTIAVPVVLLGTFGLLNLLGYSINTLTM 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIA 473
             +VL +GL VD  I+V E +     + Q S   +  +       A   I        + 
Sbjct: 398 LAMVLAVGLLVDDAIVVVENVERVMTEKQLSPREAARVSMDEISGALVGIVLVLSAVFLP 457

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
                   G   R F+IT+  ++ +S+  A+ +  A+   +++  + +            
Sbjct: 458 MAAFSGSVGVIYRQFSITIVAAMWLSVLVAMVLTPALCATMLKPGQHEKTKGLAGWFNRH 517

Query: 534 IPDCIA 539
                 
Sbjct: 518 FTRLTN 523



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 77/199 (38%), Gaps = 8/199 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
           Q     A    L  +++     +      +TE        E++   +  + +  + ML++
Sbjct: 301 QIATEAAVRAQLHELEQFFPPGLKTVYPLDTEPFITLSIGEVVETLLEAIGLVFLVMLVF 360

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     +   L     + + +  T G   L G   N   + A++  +G  V+D +VV + 
Sbjct: 361 LQ---NFRATLIPTIAVPVVLLGTFGLLNLLGYSINTLTMLAMVLAVGLLVDDAIVVVEN 417

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           +     +    +S R+    S++E  G  V   +      LPMA + GSV      F+I 
Sbjct: 418 V--ERVMTEKQLSPREAARVSMDEISGALVGIVLVLSAVFLPMAAFSGSVGVIYRQFSIT 475

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   + ++   ++ +   +
Sbjct: 476 IVAAMWLSVLVAMVLTPAL 494



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/114 (14%), Positives = 50/114 (43%), Gaps = 4/114 (3%)

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++ I +L+ +   ++ W   L  +  + L +   +    + G+  ++     +LT +G 
Sbjct: 875 ALAMIVILLCLAALYESWAIPLAVLLVIPLGVVGAIIATLMRGLANDVYFQVGLLTTVGL 934

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +V + +++ +  +     +    +  + +  +  E L   + TS+A  + V P+
Sbjct: 935 AVKNAILIVEFAK---MGFEQGKTLEEAVLTAARERLRPILMTSIAFVVGVFPL 985


>gi|83747316|ref|ZP_00944357.1| Acriflavin resistance plasma membrane protein [Ralstonia
           solanacearum UW551]
 gi|207739109|ref|YP_002257502.1| transporter protein [Ralstonia solanacearum IPO1609]
 gi|83726016|gb|EAP73153.1| Acriflavin resistance plasma membrane protein [Ralstonia
           solanacearum UW551]
 gi|206592482|emb|CAQ59388.1| transporter protein [Ralstonia solanacearum IPO1609]
          Length = 1029

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 74/612 (12%), Positives = 185/612 (30%), Gaps = 43/612 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ +I   GL+           +  FP                     L   
Sbjct: 9   RKPIPSILLFILITVAGLVS-----FRMLSIQNFPDIDFPAV---------SVTATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    +   + F   +  +   + V   +  
Sbjct: 55  TPSQMETEVTRKIEDSIASIGAIKHITSTINDGSSSTIVEFQLEKDVQEAVNDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  D ++ ++   T   + ++            A + S  +      ++       
Sbjct: 115 IRAQLPSDVQEPVISRVTFASMPVLTYAVQATD--MDAEDLSWYVDNTVNKRLLSVRGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++  + DP RL+ L  T A++S           G    V     +     
Sbjct: 173 KVTRQGGVDREVRVQLDPVRLQALNVTAAEISVQLRGMQQEAPGGRGNVGGQEQAVRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   E+                      +       RR       ++    A      
Sbjct: 233 TVKSAREL--------------------AQMDIPLSDGRRIHLSDVADVRDTAAEPRQMA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +           S     E      A L+A    +++       V     + + 
Sbjct: 273 LLDGKPVVSFQVFRSRGASEISVAEGVRAAIARLQAERPNVRVTE-VYNLVKPVSDAYTA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +   V+  ++ L++I T A + +LG TL   ++  + 
Sbjct: 332 SMHALYEGAILAVLVVWLFLRDWRATFVSAVALPLSIIPTFAAMQVLGFTLNGVTLLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  +  F +           +  +++T +   +   F G
Sbjct: 392 LVVGILVDDAIVEVENIVRHLRNGKPPFEAALEAAQEIGLAVIATSLTLVAVFLPTAFMG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F  T  +++L S+  A  +   M  ++++ +   + D   ++ +       
Sbjct: 452 GISGKFFKQFGWTASIAVLASLLVARLLTPMMAAYLLKPRHEGNRDGWVMTHYLRAARWC 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                +           F      +          +    +Q+ V       ++  R   
Sbjct: 512 LAHPWKTGSMAT---AFFVASVAIIGLIPATFLPPEDWAQLQMTVEMPPGSTIAQTREAT 568

Query: 599 ESLQIGDISFQN 610
           E ++    + ++
Sbjct: 569 ERVRQVVKAHKD 580



 Score = 84.4 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 6/161 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +A+L+       W     +   L L I  T     + G   N   + A+  ++G  V
Sbjct: 339 GAILAVLVVWLFLRDWRATFVSAVALPLSIIPTFAAMQVLGFTLNGVTLLALTLVVGILV 398

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +V  + +   ++         +   ++  E     + TS+      LP A  GG   
Sbjct: 399 DDAIVEVENI---VRHLRNGKPPFEAALEAAQEIGLAVIATSLTLVAVFLPTAFMGGISG 455

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                F    +  ++ +   +  +   +  ++   R +  R
Sbjct: 456 KFFKQFGWTASIAVLASLLVARLLTPMMAAYLLKPRHEGNR 496



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 70/193 (36%), Gaps = 4/193 (2%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                       +  A   V + V+   +       ++       +  +EL     + + 
Sbjct: 791 DRSRNVTISVGLEGGALGDVNQAVEALPSIRKLPPGVRRIASGDVEGMQELFGGFFLAMF 850

Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
              + +   + + F  +   +  +  L L +    G  ALFG   +L A+  +L L+G  
Sbjct: 851 AGVLCVYAVLVLLFHDFTQPVTILAALPLSVGGAFGLLALFGFSLSLPALIGLLMLMGIV 910

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
             + +++ +     +      +S  + +  + ++     V T++A    ++PMA  G   
Sbjct: 911 TKNSILLVE--YAIVAQRDHGMSRTEALIDACHKRARPIVMTTVAMTAGMVPMA-LGLEG 967

Query: 794 IGSFAIPMAFGIV 806
              F  PMA  ++
Sbjct: 968 DTGFRAPMAVAVI 980


>gi|57242721|ref|ZP_00370658.1| hydrophobe/amphiphile efflux-1 family protein [Campylobacter
           upsaliensis RM3195]
 gi|57016650|gb|EAL53434.1| hydrophobe/amphiphile efflux-1 family protein [Campylobacter
           upsaliensis RM3195]
          Length = 1041

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 75/651 (11%), Positives = 181/651 (27%), Gaps = 36/651 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++P+  P                     +
Sbjct: 9   RPVFASVVAIIISLAGTIA-----LYSLPVEQYPNLTPPTV---------SVSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQG 121
              ++  + +  ++  + ++       +     Q ++T  F            V   +  
Sbjct: 55  AQTISESVAIPIEDAINGVENMIYLESTSSASGQMRLTAYFDIGTDPNQATVDVNNRISS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +KL    KK  +         +            +A++    I    ID I       
Sbjct: 115 ATAKLPEAVKKLGVTVRKSNSSILEAIALYSTDGSMNAVDIYNYITLNIIDDIKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+ L +   T+ ++       N        G   +       Y
Sbjct: 175 DAFAIGNRNYSMRVWLDPNLLNKYQITSKEVLSAIEEQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +               + +    I                +I       +   
Sbjct: 235 SITMQGRL-------------KSSQEFGEVILRVNEDGSFLRLKDVADIELGSQQYVAQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I + ++  +   T +  G     L           V          S   
Sbjct: 282 RYEGNDAVPIIINLQSGANSVNTAKLVGEKLEELSKNFPSGLAYQVPYDTTTFIKASIYE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+++ +   +  L+   ++ ++++ T A L LLG ++ L ++  ++
Sbjct: 342 VLKTFVEALILVIIVMYLFLKNFRSTLIPMIAVPVSLLGTFAGLYLLGFSVNLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVV 476
           L IG+ VD  I+V E +        N SV  +  +      S    I        I    
Sbjct: 402 LAIGIVVDDAIIVVENVDRILHEDPNISVKDATIIAMEEVASPVISIVLVLCAVFIPVSF 461

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +  F G   + FA+T+ +S+ IS F A+++  ++    ++    +          F    
Sbjct: 462 ISGFVGEIQKQFALTLAISVAISGFVALTLTPSLCALFLKRNNGEPFVFVKKFNDFFDWS 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSV 593
                   A      +  +     +     +        +       + +        S 
Sbjct: 522 TKIFSAGVAYILKRVMRFVMIFGIMLGGTYYLYQSVPSSLVPTEDQGIIMSIINLPAASS 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +   ++ +     +        N  + L      + +       +  ++ +
Sbjct: 582 LHRTIDFIDKTAKNDILGQNGINSSMALIGFDLFTNSPKENAGAMFIQLED 632



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/434 (10%), Positives = 130/434 (29%), Gaps = 17/434 (3%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM---GFSRAYS 461
           +  L +T +      +     +  D N    +     +     +  ++        ++ S
Sbjct: 76  MIYLESTSSASGQMRLTAYFDIGTDPNQATVDVNNRISSATAKLPEAVKKLGVTVRKSNS 135

Query: 462 TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           +I ++         +        +    I     +           R   + +     + 
Sbjct: 136 SILEAIALYSTDGSMNAVDIYNYITLNIIDDIKRVPGVGDAFAIGNRNYSMRVWLDPNLL 195

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           +             +    Q+   +  G       S     +     L    +F   I  
Sbjct: 196 NKYQITSKEVLSAIEEQNAQYATGK-IGEEPVTQKSPYVYSITMQGRLKSSQEFGEVILR 254

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                  + L  V       Q      +    +   ++       +SV   +++    ++
Sbjct: 255 VNEDGSFLRLKDVADIELGSQQYVAQGRYEGNDAVPIIINLQSGANSVNTAKLVGEKLEE 314

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           +++  P               +  I + +   + + I ++I +++  K +   L  +  +
Sbjct: 315 LSKNFPSGLAYQVPYDTTTFIKASIYEVLKTFVEALILVIIVMYLFLKNFRSTLIPMIAV 374

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T     L G   NL  + A++  IG  V+D ++V + +   +     +IS +D 
Sbjct: 375 PVSLLGTFAGLYLLGFSVNLLTLFALILAIGIVVDDAIIVVENV-DRILHEDPNISVKDA 433

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSI 813
              ++ E     +    +  + +  + +       + G +   FA+ +A  + ++   ++
Sbjct: 434 TIIAMEEVASPVI----SIVLVLCAVFIPVSFISGFVGEIQKQFALTLAISVAISGFVAL 489

Query: 814 FIAAPILLFIYDWR 827
            +   +        
Sbjct: 490 TLTPSLCALFLKRN 503



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 74/205 (36%), Gaps = 10/205 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALG 695
             V +++T+                        G +  ++  I + + +  ++ +W   L 
Sbjct: 837  AVMEELTKEFLGEDYTLAWSGTSYQEATNSNTGSIAFVLGMIFVFLILAAQYERWLMPLA 896

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             IT +   +  +L F  L     ++     +L LIG S  + +++ +   +         
Sbjct: 897  VITAVPFALFGSLLFIWLRDFYNDVYFQTGLLLLIGLSAKNAILIVEFAMEE--HLKKGK 954

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
            S  D   ++        V TS+A  + +LP+ +    G +   +    +  G++ A++ +
Sbjct: 955  SIFDASVEAAKLRFRPIVMTSLAFTLGILPLVISSGAGSAARHALGTGLIGGMIAASTLA 1014

Query: 813  IFIAAPILLFIYDWR----AKNARI 833
            IF        +  +      K  ++
Sbjct: 1015 IFFVPLFFYLLESFNAWLDKKRRKV 1039


>gi|218768729|ref|YP_002343241.1| probable drug efflux protein [Neisseria meningitidis Z2491]
 gi|121052737|emb|CAM09080.1| probable drug efflux protein [Neisseria meningitidis Z2491]
          Length = 1067

 Score =  174 bits (441), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 159/570 (27%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMADEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 102/291 (35%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    +++       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMADEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|307638223|gb|ADN80673.1| Protein-export membrane protein [Helicobacter pylori 908]
 gi|325996817|gb|ADZ52222.1| Protein-export membrane protein [Helicobacter pylori 2018]
 gi|325998409|gb|ADZ50617.1| Protein-export membrane protein [Helicobacter pylori 2017]
          Length = 526

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 157/545 (28%), Positives = 276/545 (50%), Gaps = 31/545 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFIFALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALL----- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L +       +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 106 -----LELQGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVL--------PNNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGREEISVQLPGIKTLEEERRAKDLISKSAHLQMMAVDEEHNKDAMNMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D++    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDAEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMNAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG  LG DSI     A++ G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIVGPSLGKDSIKTSIIALIGGFILVMGFMVLYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+ + V  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLREGEGVVKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIIGTQGIYQALLPKLAQTKSLYFWFG 520

Query: 530 RFFLI 534
                
Sbjct: 521 VKNKR 525



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ +I   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALIGGFILVMGFMVLYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRE---GEGVVKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+ + +  +G   I  FA+    GI+ +  ++I
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAI 495


>gi|254429991|ref|ZP_05043698.1| RND transporter, HAE1/HME family, permease protein [Alcanivorax sp.
           DG881]
 gi|196196160|gb|EDX91119.1| RND transporter, HAE1/HME family, permease protein [Alcanivorax sp.
           DG881]
          Length = 997

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/697 (9%), Positives = 191/697 (27%), Gaps = 58/697 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I   G+   +     +  +  +P   P               +     
Sbjct: 9   KRPVFATVISLLIVVFGVSALM-----KLPIREYPDIDPPEV---------SISVDYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   S ++         R    + T+ F   R  +  A+ V   +  
Sbjct: 55  APEVIDTQIIQVIEGAISGVEGVRKIESRSRLGSARTTVEFTLERDVDIAANDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  + +  ++         I+        +     E +    R  +D+  + +   
Sbjct: 115 VLNRLPEEAETPVIAKADADARPIIWVTLTSSTLAPQ--ELTDFAERSLVDRFAVLDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +    D   +     T   +       N               +     
Sbjct: 173 EVIIGGERRYAMRVWLDRQSMAANQVTVTDIEQALRSNNVELPAGKLESESRGFTIRADN 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +    +     G           +   +       
Sbjct: 233 RLAT--------------------VQAFEALVVSRQGDYLLRLGDVARVALGVENDDSVL 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +     +        +R          +          S   
Sbjct: 273 RANGEAAIGLGVVRQSKANTVAVSDRVREEIVAVRDNLPADIHLDINSDESLFIRASIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+ V+F  +   +  L+   +I ++VI       ++  ++ + ++  ++
Sbjct: 333 VLITLGISVVLVIAVIFAFLGNLRATLIPAVTIPVSVIGAFIGFGVMDFSINVLTLLALI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I+    + +S   +  +G  +    +  + +T +   V + F G
Sbjct: 393 LAIGLVVDDAIVMLENIQRRIDEGESRLVAAYLGARQVAFAVVATTLTLVAVFVPISFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDINPLSRF 531
              G     F  T+  +++IS   A+S+   +    +     K        +        
Sbjct: 453 GDVGRLFSEFGFTLASAVIISSIVALSLAPMLCSRWLHRHSRKEMQGQNNFLQRGLTRLN 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +           VG  +L    ++            + +G   +   + +   +
Sbjct: 513 QAYASRLQRTLASPWPLAVGCVLLCLAAALLFRQLPQELAPTEDRGVFIIPATSPQGSTV 572

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFL------------VRLQYQPGDSVAQTRVLEMVK 639
                + ++++   +        +  L              +         +    E+V 
Sbjct: 573 EYGAHHTQAVEKMLMPLVENGEAERVLAIIGFRGVPERAFTIVRLKDWEERERTQQEIVG 632

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
           +   ++  ++ ++   +  P + +    + +  V+  
Sbjct: 633 ELRGQLSQVTGLRAFAVNPPGLGQSAFDQALEVVVAG 669



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 88/255 (34%), Gaps = 7/255 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    +  + L  V      ++  D   +        L  ++    ++VA +  +    
Sbjct: 244 VVSRQGDYLLRLGDVARVALGVENDDSVLRANGEAAIGLGVVRQSKANTVAVSDRVREEI 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAIT 698
             + + +P     +         R  IR+ ++ + IS + ++  I          L    
Sbjct: 304 VAVRDNLPADIHLDINSDESLFIRASIREVLITLGISVVLVIAVIFAFLGNLRATLIPAV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ + +      F +     N+  + A++  IG  V+D +V+ + +    +      S  
Sbjct: 364 TIPVSVIGAFIGFGVMDFSINVLTLLALILAIGLVVDDAIVMLENI---QRRIDEGESRL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFI 815
                   +     V T++      +P++  GG V      F   +A  +++++  ++ +
Sbjct: 421 VAAYLGARQVAFAVVATTLTLVAVFVPISFMGGDVGRLFSEFGFTLASAVIISSIVALSL 480

Query: 816 AAPILLFIYDWRAKN 830
           A  +        ++ 
Sbjct: 481 APMLCSRWLHRHSRK 495



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 14/113 (12%), Positives = 46/113 (40%), Gaps = 4/113 (3%)

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++ + + + +  +F+ W   L  + T+ L +   +   ++ G   N+ +   ++ L+G 
Sbjct: 858 ALALVIVFLVLAAQFESWIHPLIIMLTVPLALAGAVIAISVTGDSLNIYSQIGMIMLLGL 917

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
              + +++ +      +L     S ++ I +         + T ++     +P
Sbjct: 918 MAKNGILIVEFAN---QLRDQGRSVKEAIYEGAIVRFRPVLMTGVSTIFGAVP 967


>gi|23500089|ref|NP_699529.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis 1330]
 gi|81751517|sp|Q8FWV9|BEPG_BRUSU RecName: Full=Efflux pump membrane transporter BepG
 gi|23463681|gb|AAN33534.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis 1330]
          Length = 1074

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLLSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLTLTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPSGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|163748953|ref|ZP_02156204.1| putative aminoglycoside efflux pump (Acriflavine resistance
           protein) [Shewanella benthica KT99]
 gi|161331329|gb|EDQ02217.1| putative aminoglycoside efflux pump (Acriflavine resistance
           protein) [Shewanella benthica KT99]
          Length = 1055

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 74/678 (10%), Positives = 184/678 (27%), Gaps = 46/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +GL+  +        +D++P   P               + +    
Sbjct: 8   RPVFACVISIVIVLLGLIGMV-----NLPIDQYPYITPP-------------QVKVSASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
               +    +  +  L   L     +   S +   +    +T++F      +  A  V  
Sbjct: 50  PGATSTTAAESVATPLEQELNGLPNMIYMSSKSTNSGSTNVTITFDVGTNPDLAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q  N  L +D +   +  + E  + ++             I  S          +   
Sbjct: 110 STQQANGSLPIDVQTEGVTVSKEASVELLKLALTSSDERYDEIYLSNYGTINIESALKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +   +      +     P  +     TT  +       N        G +   DS 
Sbjct: 170 PGVGRVRNTGARSYSMRVWLKPDTMAGYGLTTGDVIAAIKAQNKEYPVGTIGSQPNSDSL 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S                +    I                 I    +  
Sbjct: 230 SMTLPITAAGRMS-------------SVPQFNEIIVRANTDGSIIRLRDIAQIELGSSAY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L           V          
Sbjct: 277 TLQSQLNGANATILQVYLLPGSNALEVTKNVKKEMAKLAEKFPQGMNWEVFFDASVFIQN 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +  L+   ++ +++I T+A + + G T+   S+
Sbjct: 337 SIDEVVKTLVEALILVILVVYLFLQNVRATLIPAIAVPVSLIGTMAAMLVFGFTINTVSL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +    N    S   +           +  +++      V 
Sbjct: 397 LALVLAIGIVVDDAIVVVESVERLMNENGLSPVEATRTAMKELSGALVATSLVLAAVFVP 456

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G   R FA T+ +++LIS   A+++  A+   +++     +          L
Sbjct: 457 VSFLSGITGIMYREFAATITVAVLISTVVALTLSPALCALLLKPGDKATSGFFKWINDRL 516

Query: 534 IPDCIAIQF------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                            A+     ++++     + +          + +G   + +    
Sbjct: 517 DTSTSKYVALVALTTKHAKRSYFVLALMVGGVFLIMSNLPSSFMPNEDQGRFFIDMTLPD 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++  ++ L+  +   ++              +    +       + +          
Sbjct: 577 GATVNRTQAVLKKAEAKVLANPAVAYSFTLAGENRRSGSNQANGQFEIILKPWSERVETD 636

Query: 648 LSTIQNTEIVGPKISREL 665
            +  +  + +   +   L
Sbjct: 637 ATVHKVMKQIQASLQGIL 654



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 69/167 (41%), Gaps = 9/167 (5%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            + V ++ + + +++   ++ W   +   +   I  +   LG   + G+E NL    A + 
Sbjct: 870  IAVTLAMVFVFLFLAALYESWTIPIAVLLIAPIAMLGAALGTL-VSGMESNLFFQVAFIA 928

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG +  + +++ +      +L+    S  D   ++        + TSMA  + VLP+ +
Sbjct: 929  LIGMAAKNSILIVEFAN---QLHKQGKSRLDAALEAATMRFRPILMTSMAFILGVLPLVL 985

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G     S +IP+  G++ A +  I +     +    W     +
Sbjct: 986  SVGPGAVSRQSISIPILCGMIFATTIGIVMVPLFFVTTAGWLKSKVK 1032



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 96/319 (30%), Gaps = 9/319 (2%)

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
                 +K   +                  +    G   S   S      L         
Sbjct: 183 YSMRVWLKPDTMAGYGLTTGDVIAAIKAQNKEYPVGTIGSQPNSDSLSMTLPITAAGRMS 242

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                 ++ V AN    +  +R   +                     LQ           
Sbjct: 243 SVPQFNEIIVRANTDGSIIRLRDIAQIELGSSAYTLQSQLNGANATILQVYLLPGSNALE 302

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----K 689
           V + VKK++ ++           V    S  +       V     A+++ I + +     
Sbjct: 303 VTKNVKKEMAKLAEKFPQGMNWEVFFDASVFIQNSIDEVVKTLVEALILVILVVYLFLQN 362

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T+    +FG   N  ++ A++  IG  V+D +VV + +     
Sbjct: 363 VRATLIPAIAVPVSLIGTMAAMLVFGFTINTVSLLALVLAIGIVVDDAIVVVESV--ERL 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIV 806
           +    +S  +    ++ E  G  V TS+      +P+  + G + I    FA  +   ++
Sbjct: 421 MNENGLSPVEATRTAMKELSGALVATSLVLAAVFVPVSFLSGITGIMYREFAATITVAVL 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++ ++  +   +  
Sbjct: 481 ISTVVALTLSPALCALLLK 499


>gi|116748518|ref|YP_845205.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697582|gb|ABK16770.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 1063

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 77/663 (11%), Positives = 181/663 (27%), Gaps = 42/663 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+      +    + ++P+  P               + +    
Sbjct: 9   RPIFATVVSLIIVIAGLVS-----MKALPVSQYPTITP-------------VQIQVTTTY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
               +  +    +  +   +        +   S    Q  IT+ F+     +    +V  
Sbjct: 51  PGADSKTVGDSVAAPIEEQINGVDNMLYMTSTSSNTGQLTITVFFSLDTDPDIAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L     +  +    +    +++           +   +       +D +   
Sbjct: 111 RVNLAAPQLPAAVVQYGVSVQKKSSSMLMIIGVTNKDGRFSSEYVTNYANVYVLDAVKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +P R+  L  TT  +       N        G +      
Sbjct: 171 NGAGQAQIFGVPDQAMRIWMNPDRMASLGITTTDIQNAVTRQNALFGAGQIGQQPNAGHI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  +              F   +    + +     G+                  
Sbjct: 231 QLTFPVVTQ------------PPFVQPSQYEDIILRGSRDGSAIVRLKDVARAEVGRKAY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +D   L            +   +G    +        L+          V          
Sbjct: 279 VDDNRLNGAPSALIAVYQQPGANGLDVSKAVRQTLEKLKRTMPDGIEYQVVLDTTDFVRL 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +  ++   +IF+ +I T   +  +G ++ L ++
Sbjct: 339 SIEEIIHTLIEAIILVVLVVYLFLQSFRATVICSVAIFVALIGTFPGMLAMGFSINLLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCS---LDMGFSRAYSTIFDSNITALIA 473
            G++L IG+ VD  I+V E +     K   +   +          +   +     +  I 
Sbjct: 399 FGLILAIGMVVDDAIVVVENVERNMVKYHLAPREATIRAMEQIGTSLIAVVLVMASVFIP 458

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSR 530
              L    G   + FAIT+ +S+ +S F A+++  AM   +++++               
Sbjct: 459 AAFLPGTTGQLYKQFAITIVISVALSGFVALTLTPAMCGILLKHRPPPQRGPFAWFNRQF 518

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                          R  GV   +L  +                        +      D
Sbjct: 519 DRFTVAFGNAVVFMIRRMGVAFVLLAVLIGGLAYLFRTTPTSFVPNEDQGYLMSMIVMPD 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +     + ++ D  F       +  V   Y   D   +T V  +           S+
Sbjct: 579 AASLNRTSRTTEVVDGLFAENPAVADRAVVNGYSLIDGQYKTNVATIFVPLKDFKERYSS 638

Query: 651 IQN 653
           I+ 
Sbjct: 639 IER 641



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 55/147 (37%), Gaps = 5/147 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   +     + + +  T       G   NL  +  ++  IG  V+D +VV + + +NM
Sbjct: 364 SFRATVICSVAIFVALIGTFPGMLAMGFSINLLTLFGLILAIGMVVDDAIVVVENVERNM 423

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
             Y   ++ R+   +++ +     +   +      +P A   G+       FAI +   +
Sbjct: 424 VKY--HLAPREATIRAMEQIGTSLIAVVLVMASVFIPAAFLPGTTGQLYKQFAITIVISV 481

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++   ++ +   +   +   R    R
Sbjct: 482 ALSGFVALTLTPAMCGILLKHRPPPQR 508



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 70/215 (32%), Gaps = 8/215 (3%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
                  +  +           +   D+           +         S    +V+E  
Sbjct: 791 RLYTRSRDNQMVPLSAVVETRYVTGPDLVPHFNGFPAAQVTGSAAVGYSSGDAIKVMEET 850

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
            +++                 K         +       I + + +  +F+ W      +
Sbjct: 851 AREVLPDGYDFAWSGMAFEEKKAGA----TSMAAFAFGLIIVFLVLAAQFESWTLPGSVM 906

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
           T +   I   L F  L G+E ++     +L LIG    + V+   R+   ++L    +S 
Sbjct: 907 TAVPFGILGALAFNWLRGLENDVYFQIGLLVLIGLGAKNAVL---RVTFAVELRQQGLSI 963

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            D   K+  E L   + TS+A  + VLP+A+  G+
Sbjct: 964 MDATIKAGEERLRPIIMTSLAFILGVLPLAIATGA 998


>gi|330980898|gb|EGH79001.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 1063

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 68/595 (11%), Positives = 158/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 SEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++          +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLPATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGADGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLSGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDRMLGSWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASNGYVGTVARVIRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQD 577



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/271 (10%), Positives = 89/271 (32%), Gaps = 18/271 (6%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   D  G +++       + L+      ++     +   N                
Sbjct: 785  QQFRQDADQIGQLKVRNNLGEMIPLATFVKVSDTAGPDRVMHYNGFITAEINGAAAPGYS 844

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAMLI 682
               AQ  V +++++++                  ++ + I  G   + +      +A L+
Sbjct: 845  SGQAQAAVEKLLREELP--------TGMIYEWTDLTYQQILSGNTALFVFPLCVLLAFLV 896

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                   W   L  I  + + +   +    + G + N+     ++ L+G +  + +++ +
Sbjct: 897  LAAQYESWSLPLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVE 956

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +         +S  D + ++    L   + TS A  + V+P+ +    G  +  +  +
Sbjct: 957  FAKD---KQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGV 1013

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  G++      + +     + I ++  + 
Sbjct: 1014 AVFSGMLGVTFFGLLLTPVFYVLIRNYVERQ 1044



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVAATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLSGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|84496347|ref|ZP_00995201.1| protein export protein SecF [Janibacter sp. HTCC2649]
 gi|84383115|gb|EAP98996.1| protein export protein SecF [Janibacter sp. HTCC2649]
          Length = 397

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 69/306 (22%), Positives = 134/306 (43%), Gaps = 11/306 (3%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L     +I  +  R     +SI+    +I  L  + LN G++F GG +  V ++   +
Sbjct: 8   NDLYTGKKSIPVVAKRKSFYLVSIVLMAIAIAGLGVNKLNLGLEFSGGSEFRVTSSSIPN 67

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                +        D          N  VR+Q +  D     RV   + +          
Sbjct: 68  DYEFVARDALGASDDSQGVRVSKLGNNTVRVQTERLDDTESARVAAELAQTFK---VDQK 124

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             ++  +GP     + ++ +  ++I  + +   + I F+ W  AL A+  L  D+  T+G
Sbjct: 125 NVSSTFIGPSWGDSVTKQALRALVIFLVLVAAVLSIYFRNWKMALAALLALAHDLIITVG 184

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFRDLIDKSINE 767
            ++  G E +   +   LT++GYS+ D VVV+D++R+N         ++F    + ++N+
Sbjct: 185 IYSFTGFEVSPATMIGFLTVLGYSIYDTVVVFDKVRENTNEAFANGRLNFAQAANLALNQ 244

Query: 768 TLGRSVYTSMAAFISVLPMA-----VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           TL RS+ T++   + +L +        G   +   A+ +  GI++ A SSIF+A P+L+ 
Sbjct: 245 TLVRSINTTVIGILPILAVLTVGAIFLGPGTLLDLALVLFIGIMIGAYSSIFLATPLLVS 304

Query: 823 IYDWRA 828
           +     
Sbjct: 305 LRSKDE 310


>gi|320324760|gb|EFW80834.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 1063

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 158/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTELDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVTEE-------------EFENVVVRAGADGEITCLKDVARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++  ++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPASLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVQATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDRILGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQD 577



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 72/201 (35%), Gaps = 10/201 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAMLIYIWIRFKWYF 692
              +  + +++              ++ + I  G   + +      +A L+       W  
Sbjct: 847  QAQAAVEKLLREELPNGMVYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQYESWSL 906

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I  + + +   +    + G + N+     ++ L+G +  + +++ +  +       
Sbjct: 907  PLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAKD---KQA 963

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +S  D + ++    L   + TS A  + V+P+ +    G  +  +  + +  G++   
Sbjct: 964  EGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGMLGVT 1023

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
               + +     + I ++  + 
Sbjct: 1024 FFGLLLTPVFYVLIRNYVERQ 1044



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  +   +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPASLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVQATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|323165228|gb|EFZ51018.1| inner membrane protein [Shigella sonnei 53G]
          Length = 978

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 60/599 (10%), Positives = 163/599 (27%), Gaps = 29/599 (4%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNS 124
           +   +    ++  + +        +     +  ITL+F      +    +V   LQ    
Sbjct: 1   MQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATP 60

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
            L  + ++  +         ++++    D   +   + S  +     D +          
Sbjct: 61  LLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSRLNGVGDVQ 120

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                   +    D   L +   T   +     + N+       G             + 
Sbjct: 121 LFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASII 179

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            +  +                 +                      +            + 
Sbjct: 180 AQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARIN 226

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                          +   T +      A L+         +           S      
Sbjct: 227 GKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVK 286

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+VL I
Sbjct: 287 TLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 346

Query: 425 GLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           GL VD  I+V E +     +++     + +   S+    +    +      + + FFGG 
Sbjct: 347 GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 406

Query: 484 ---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSR 530
                R F+IT+  ++ +S+  A+ +  A+   +           +       +      
Sbjct: 407 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHS 466

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                + +         + +  +++ +   +  L         + +G     +       
Sbjct: 467 VNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGAT 526

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               +  L+ +    ++ +  + E  F V      G +         +K         +
Sbjct: 527 QERTQKVLDQVTDYYLNNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERSGDEN 585



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 204 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 263

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 264 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 323

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 324 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 381

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 382 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 441

Query: 825 D 825
            
Sbjct: 442 K 442



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
             +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 799 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 858

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 859 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKKGKG--VVEATLMAVRMRLR 916

Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 917 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 962


>gi|257094039|ref|YP_003167680.1| acriflavin resistance protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046563|gb|ACV35751.1| acriflavin resistance protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 1026

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 72/529 (13%), Positives = 160/529 (30%), Gaps = 35/529 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L   I  +GL+        +  +  +P                         
Sbjct: 9   RRPVFATVLSLSIMLVGLVS-----YTRLPVREYPKIDEPVVT---------VDTTYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + ++   +     RQ  ++I++ F   R  ++ A  V   +  
Sbjct: 55  SAEIVESQISKPLEDSLAGIEGVDVITSISRQENSQISVRFKLERNPDSAASDVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V +KL  D  + ++         I+    + D     A+E +    R    ++       
Sbjct: 115 VRNKLPTDIDEPVIAKVEADANPIIWIAFSSD--QHSALEVTDVANRIVKPRLQTLPGAA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  RL     T   +       N               S   ++
Sbjct: 173 DVRVFGERKFAMRIWLDRDRLAAFNLTAQDVEDALRRQNVEVPAGRIE------SQSREF 226

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + +++             +  + +V  + D  G+          +    A      
Sbjct: 227 SVVARTDLT----------EPAQFAEIIVKQATDAKGSYPVRIADLGRVEIGAASERSSV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +              + +         +   +      S   
Sbjct: 277 RFNGRPAVALGVIKQATANPLELSRALRGELPKVISELPQGMRASIAYDSSVFIDRSIDA 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LVL+++F+ +   +  L+   +I +++I    L+ +LG T+   ++  +V
Sbjct: 337 VFKTIGEAMALVLLIIFLFLRNFRATLIPLVTIPVSLIGAFTLMLVLGFTINTLTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G       +    IT       + F  
Sbjct: 397 LAIGLVVDDAIVVLENIFRHIEEGMPRRQAAFQGAQEIGFAVVAMTITLAAVYAPVAFMT 456

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           G   +    FA+T+  ++L+S F A+++   M   +++++         
Sbjct: 457 GRTGKLFVEFALTLAGAVLVSGFVALTLSPMMCSLLLKHETRHGKAYVW 505



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 54/146 (36%), Gaps = 6/146 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L  + T+ + +        + G   N   + A++  IG  V+D +VV + +    +
Sbjct: 359 FRATLIPLVTIPVSLIGAFTLMLVLGFTINTLTLLALVLAIGLVVDDAIVVLENI---FR 415

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                +  R    +   E     V  ++       P+A   G        FA+ +A  ++
Sbjct: 416 HIEEGMPRRQAAFQGAQEIGFAVVAMTITLAAVYAPVAFMTGRTGKLFVEFALTLAGAVL 475

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           V+   ++ ++  +   +     ++ +
Sbjct: 476 VSGFVALTLSPMMCSLLLKHETRHGK 501



 Score = 41.2 bits (94), Expect = 0.81,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 74/238 (31%), Gaps = 9/238 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L +L   D S    +       R      +      + E +K        +         
Sbjct: 779  LANLLTVDESVSPRELNHFAQRRAVTITANLAPGYAMGEALKFLEEAAGRVLPPGYAIDY 838

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALF 714
              +     +    + +        IY+ +      +      + T+ L +T  L    L 
Sbjct: 839  AGQSREFRLSSSSLALTFVLALAFIYLVLAAQFESFRDPFIIMLTVPLSMTGALLALLLS 898

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ +   ++TL+G      +++ +      +L     + +  +  +    L   + 
Sbjct: 899  GGTLNVYSQIGLVTLVGLITKHGILIVEFAN---QLQEQGRAIKQAVIDASELRLRPILM 955

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+ A  +  +P+A+    G          +  G+++    ++F+   +   +     +
Sbjct: 956  TTGAMVLGAIPLALARGAGAESRQQIGWVIVGGLLLGTLFTLFVVPTVYTLLAKRTKR 1013


>gi|330958419|gb|EGH58679.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 1063

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 159/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGSISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 SEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGADGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKQSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLSGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKAHDAPKDGFSRFLDKLLGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWMGFASTPTGFVPSQD 577



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 72/201 (35%), Gaps = 10/201 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAMLIYIWIRFKWYF 692
              +  + +++              ++ + I  G   + +      +A L+       W  
Sbjct: 847  QAQAAVEKLLREELPSGMIYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQYESWSL 906

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I  + + +   +    + G + N+     ++ L+G +  + +++ +  +       
Sbjct: 907  PLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAKD---KQA 963

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +S  D + ++    L   + TS A  + V+P+ +    G  +  +  + +  G++   
Sbjct: 964  EGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGMLGVT 1023

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
               + +     + I ++  + 
Sbjct: 1024 FFGLLLTPVFYVLIRNYVERK 1044



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVAATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLSGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|289625708|ref|ZP_06458662.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646317|ref|ZP_06477660.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330987295|gb|EGH85398.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 1063

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 159/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTELDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVTEE-------------EFENVVVRAGADGEITRLKDVARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVQATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDRILGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQD 577



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 72/201 (35%), Gaps = 10/201 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAMLIYIWIRFKWYF 692
              +  + +++              ++ + I  G   + +      +A L+       W  
Sbjct: 847  QAQAAVEKLLREELPNGMVYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQYESWSL 906

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I  + + +   +    + G + N+     ++ L+G +  + +++ +  +       
Sbjct: 907  PLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAKD---KQA 963

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +S  D + ++    L   + TS A  + V+P+ +    G  +  +  + +  G++   
Sbjct: 964  EGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGMLGVT 1023

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
               + +     + I ++  + 
Sbjct: 1024 FFGLLLTPVFYVLIRNYVERQ 1044



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVQATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|254418244|ref|ZP_05031968.1| RND transporter, HAE1 family [Brevundimonas sp. BAL3]
 gi|196184421|gb|EDX79397.1| RND transporter, HAE1 family [Brevundimonas sp. BAL3]
          Length = 1090

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 67/559 (11%), Positives = 152/559 (27%), Gaps = 38/559 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  IG+        P   L ++P   P               + +    
Sbjct: 10  RPIFAAVIAVVITIIGVFA-----YPLLPLSQYPEIAPPT-------------ITINAAY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L +  +  +   +        I   S       IT++F      +     V  
Sbjct: 52  PGASAETLAETVAAPIEQEVNGVEDMLYITSSSTSDGAVAITVTFQPGTDLDAAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    ++  +V    +   +++                        D++   
Sbjct: 112 RVSLAEPRLPDAVRQTGVVVNKAESGFLMVLGLTSPDGSLSNDYVGNYGNSTLRDRLLRL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++  +   T   +       N        G     +S 
Sbjct: 172 EGVGAVQVFGGGNYSMRIWIDPAKAAERGLTGPDIVAALRAQNVQAAAGSIGQPPFPNSA 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                       S   L            +    +   +   R  +      I       
Sbjct: 232 ------------SAFQLPIQVEGRLTDPDQFSNVVLKTDSQGRVTYLRDVARIELGAQDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +   T E        ++A         V          
Sbjct: 280 GIRGFFDGQRGVGLAVVQQPGANALGTAERVLAEVEAVKAELPAGMDLSVPYNPTEFVAA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV+IV+ + +   +  ++   +I + ++ T A+   LG ++   S+
Sbjct: 340 SVESVQHTLIEAVILVVIVVMIFLQTWRAAIIPIVAIPVALVGTFAVQLALGYSINSLSL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
             +VL +G+ VD  I+V E +     +  +   +          A   I    I+  I T
Sbjct: 400 FALVLAVGIVVDDAIVVVENVERAISEGLTPKEAAYRSMQEVSGALIAIGLVLISVFIPT 459

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           + +    G   R FA+ +  + +IS+F ++++  AM   +++  +    +         +
Sbjct: 460 MFVPGIPGIFYRQFAVVIASASVISLFVSLTLSPAMAALLLKPHRKDHENDRKPGVLGSV 519

Query: 535 PDCIAIQFMRARFWGVGIS 553
                    +       +S
Sbjct: 520 VYYGGWAGRKFNEGFDWLS 538


>gi|325293922|ref|YP_004279786.1| acriflavin resistance protein B [Agrobacterium sp. H13-3]
 gi|325061775|gb|ADY65466.1| acriflavin resistance protein B [Agrobacterium sp. H13-3]
          Length = 1029

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 83/685 (12%), Positives = 183/685 (26%), Gaps = 40/685 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G L  +        + ++P   P                     
Sbjct: 7   RRPVFAWVIAIVIMLGGALAIV-----TLSISQYPDIAPTTVR---------VSATYNGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + L        S      ++TL+F +S   +    +V   LQ 
Sbjct: 53  SAETVEKSVTTIIEDGMTGLDDLTYMTSSSSTGSAEVTLTFGNSILPDIAQVQVQNKLQL 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    ++  +  +      +++          ++ +       +  DQI   E   
Sbjct: 113 VQSQLPDTVQQRGIQVSRSTSSILMVGALISTDGKRNSADLGDVFSSRVEDQIKRLEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +   TTA ++      N        G            
Sbjct: 173 SINVFGS-EYAMRIWLDPFKLNKYQLTTADVTGAIESQNTQVSVGSLGAVPAVQGQQLNV 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + +++                     I   E             I           
Sbjct: 232 TVTAQSQLT-------------TVADFESVILKVEKDGATVRLSDVARIEIGQETYGGDS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T          +                      S   
Sbjct: 279 RSNGRPSAGFAVNLATGANALDTAARVKSALTAVEGSLPAGVSIEYPYDTTPFVKLSIEK 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +VL + +   +   +   ++ + ++ T  +L++ G ++   ++  +V
Sbjct: 339 VVHTLIEAIILVFVVLLVFLQNLRATFIPMIAVPVVLLGTFGILAVTGYSINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   + +         I    +      + + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERIMSEEGLSPVEATEKSMGEITGAIIGIALVLTAVFIPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++L+S   AI +  A+   +++          P + F      
Sbjct: 459 GGSTGIIYRQFSITIVSAMLLSAVVAIVLTPALCATMLKPIDHTKKQRGPGAWFNRGFGK 518

Query: 538 IAIQF--------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               +         R     +   I+   C+             + +G +   +      
Sbjct: 519 TTDGYVSSIGYLLKRPLRVTILFLIVVGGCAWFFTKLPSSFLPQEDQGVLLTIIQTPTGS 578

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++      ++ ++      +  + E  F V      G       V   +K       P  
Sbjct: 579 NIERTNEVVKQVESYFREKEAANVESVFGVLGFSFSGSGQNNAIVFTKLKDFSERTAPDQ 638

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
                               +  ++
Sbjct: 639 HAAAIVQRAMGTFFGFRDAQVFPLL 663



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 48/431 (11%), Positives = 125/431 (29%), Gaps = 21/431 (4%)

Query: 415  PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
                 +      +  +N +V  ++++ + +      +      RA  T F      +   
Sbjct: 604  SVFGVLGFSFSGSGQNNAIVFTKLKDFSERTAPDQHAA-AIVQRAMGTFFGFRDAQVFPL 662

Query: 475  VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            +     G G   GF+    +    +   A++     +I +       S   +        
Sbjct: 663  LPPAIQGMGTSSGFS-MYLVDSGRNGTDALTATSKDLIALATSNPKISSLRSDSQDNETQ 721

Query: 535  PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               I  Q           S+   + +I                 + +   A   +    +
Sbjct: 722  MKIILDQEKMGAMGVDLSSVNLMLSTIFAGRDVNDFTLNGELKPVYVQGDAPYRMQPDDL 781

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +        G++   +   E  ++         +      LE                  
Sbjct: 782  KFWYARNTSGEMVPFSSFSEVKWINAPPSLARYNGTGAISLEGTAGAGVASGEAMDEMER 841

Query: 655  EIVGPKISRELIRKGI----------VGVIISAIAMLIYI---WIRFKWYFALGAITTLI 701
                      +  +GI            ++ +   +++++    +   W      I  + 
Sbjct: 842  LTASMPGGYTVAWQGISYQERLSGSQAPMLYALSVLIVFLCLAALYESWSIPFSVILAVP 901

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + +   L     FG   ++     +LT IG +  + +++ +  ++        +S  +  
Sbjct: 902  VGVLGALTAAHFFGQTNDVYFKVGLLTTIGLAAKNAILIVEFAKE---RQEHGLSLVEAA 958

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + TS+A  + V+P+A+    G +   +  I +  G++ A    IF    
Sbjct: 959  LEAAKLRLRPIIMTSLAFILGVVPLAIATGAGSAAQNAIGIGVLGGMLSATLLGIFFVPS 1018

Query: 819  ILLFIYDWRAK 829
              + I     +
Sbjct: 1019 FFVIIRRLSRR 1029



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
                  +  + + +  T G  A+ G   N   + A++  IG  V+D +VV + +     
Sbjct: 361 LRATFIPMIAVPVVLLGTFGILAVTGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERI 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S  +  +KS+ E  G  +  ++      +PMA +GGS       F+I +   ++
Sbjct: 419 MSEEGLSPVEATEKSMGEITGAIIGIALVLTAVFIPMAFFGGSTGIIYRQFSITIVSAML 478

Query: 807 VAASSSIFIAAPI 819
           ++A  +I +   +
Sbjct: 479 LSAVVAIVLTPAL 491


>gi|15612514|ref|NP_224167.1| preprotein translocase subunit SecD [Helicobacter pylori J99]
 gi|6647818|sp|Q9ZJ66|SECD_HELPJ RecName: Full=Protein-export membrane protein
 gi|4156069|gb|AAD07024.1| PROTEIN-EXPORT MEMBRANE PROTEIN [Helicobacter pylori J99]
          Length = 526

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 158/545 (28%), Positives = 275/545 (50%), Gaps = 31/545 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFIFALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALL----- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L +       +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 106 -----LELQGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVL--------PNNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGREEISVQLPGIKTLEEERRAKDLISKSAHLQMMAVDEEHNKDAMNMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D++    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDAEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMNAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG  LG DSI     A+V G +L++ FM + Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIVGPSLGKDSIKTSIIALVGGFILVMGFMALYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+ + V  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLREGEGVVKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIIGTQGIYQALLPKLAQTKSLYFWFG 520

Query: 530 RFFLI 534
                
Sbjct: 521 VKNKR 525



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMALYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRE---GEGVVKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+ + +  +G   I  FA+    GI+ +  ++I
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAI 495


>gi|313669430|ref|YP_004049857.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sulfuricurvum kujiense DSM 16994]
 gi|313156627|gb|ADR35304.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sulfuricurvum kujiense DSM 16994]
          Length = 1042

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 64/576 (11%), Positives = 162/576 (28%), Gaps = 41/576 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L +  +  +P+ +P               ++++   
Sbjct: 9   RPIFSTVLSVIIILAGLI-----GLNKLPIQEYPAVVPP-------------QIMVQATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       L   +     +   S     +    I+++FA           +  
Sbjct: 51  PGADAETLAKTVASPLEDAINGAKNMIYMSSTASPSGTLSISVTFATGTDPAAANVDINN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   +KL  + ++  +         + +        +  A+  +   +   +D I   
Sbjct: 111 RVQVALTKLPEEVRRQGISVRERSPDILRVVGFTSKGEVHDALWLNNYALINVMDDIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P ++     T   +       N        G   +  + 
Sbjct: 171 KGVGDAFLFGSKEYAVRIWLRPDKMAAYNLTPKDVLGVIEGQNVQMSAGHIGEEPVASNQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  +  +                 +    +                 +       
Sbjct: 231 AFDYTVTTEGRL-------------KTAEEFGNILVRSNEDGSSLHLKDVARVELGAERY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +   +L    +  A        +          + A                        
Sbjct: 278 MLKGMLNKQDMAVAGVFLAPGANALEVSAELDKVLAEASKEFPKDVQYTSLYDTTKFVQT 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  K T      +V+I++++ +   +  ++   +I +++I T A L + G ++ L ++
Sbjct: 338 SINEVKHTLLEAFIMVVIIIYLFLGNWRATIIPVLAIPVSIIGTFAGLYMAGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             ++L IGL VD  I+V E +       +  +V  +  +        +    +      +
Sbjct: 398 FALILAIGLVVDDAIVVIENVERVLRTDEKITVKEATVIAMKEIAGPVIAIVLVLSAVFI 457

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
                G   G   + FA+T+ +S+ IS   A+++  A+    ++  + + I I  L   F
Sbjct: 458 PAGLSGGFSGVMYQQFAMTIVISVAISGLVALTLTPALCAVFLKKHESEPIFIIRLFNRF 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                +       +        +     +       
Sbjct: 518 FERLTLWFSASVKKMIRYAALNVLIFGVMIASAVWM 553



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 78/208 (37%), Gaps = 15/208 (7%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S    +VL    K+  + V  +++ +T         E+    +   I+  I + +++   
Sbjct: 305 SAELDKVLAEASKEFPKDVQYTSLYDTTKFVQTSINEVKHTLLEAFIMVVIIIYLFLG-- 362

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  +  + + I  T     + G   NL  + A++  IG  V+D +VV + + + 
Sbjct: 363 -NWRATIIPVLAIPVSIIGTFAGLYMAGFSINLLTLFALILAIGLVVDDAIVVIENV-ER 420

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-------WGGSVIGSFAIP 800
           +      I+ ++    ++ E  G  +    A  + +  + +       + G +   FA+ 
Sbjct: 421 VLRTDEKITVKEATVIAMKEIAGPVI----AIVLVLSAVFIPAGLSGGFSGVMYQQFAMT 476

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +   + ++   ++ +   +         
Sbjct: 477 IVISVAISGLVALTLTPALCAVFLKKHE 504



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 62/164 (37%), Gaps = 9/164 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIG 731
            + + + + + +   ++ W      + T+   +   +LG +   G+E ++     ++TL+G
Sbjct: 876  VYAIVFIFLILAALYESWSIPFAVLMTVPFALLGASLGVY-WRGLENDIYFQVGLVTLVG 934

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++ +  ++ +K     +S  D             V TS+A     LP+ +   
Sbjct: 935  LAAKNAILIVEFAQQKLKE---GMSLYDATIAGATIRFRPIVMTSLAFIGGTLPLVISTG 991

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G +        +  G+ +    +IF        I     K  R
Sbjct: 992  AGANSRHIIGTTVVSGMTLLTVVAIFFIPLFYYLIIKLTNKFKR 1035


>gi|294676173|ref|YP_003576788.1| acriflavine resistance protein B [Rhodobacter capsulatus SB 1003]
 gi|294474993|gb|ADE84381.1| acriflavine resistance protein B [Rhodobacter capsulatus SB 1003]
          Length = 1041

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 57/549 (10%), Positives = 147/549 (26%), Gaps = 41/549 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L  L     +  + ++PS                  +V++   
Sbjct: 8   RPIFAWVIALVIMGVGALAIL-----RLPVSQYPSIASPA-------------VVIQAAY 49

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   +    +  ITL+FA     +    +V  
Sbjct: 50  PGASAETVTDTVVQVIEKQMTGLDGLRYLKSDTTATGRATITLTFALGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L    + L     +  +         ++++          ++E S  +    ++     
Sbjct: 110 KLAQAEASLPEAVTRQGVTVEKSTTGFLMVAALISPDKSRSSVELSDYMNASMVESFSRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L+      A +       N       FG     +  
Sbjct: 170 KGVGAVTVFGS-EHAMRIWLDPGKLKAYDMAPAAVIAAVKGQNAQISAGSFGALPAPEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                      +   +             +       
Sbjct: 229 MLNATITAQSLL-------------KTPADFERIVLRADTDGGLVLLRDVARVELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +   T +      A L          ++          
Sbjct: 276 DINAFYNGTPSAGMAIQLASGANALDTAKLVKDKLAELAPYFPSGMEYVIPYDTTPFVTL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  L+   ++ + ++ T  +++  G ++   ++
Sbjct: 336 SIEEVIKTLFEAIVLVVLVMLVFLHNLRATLIPTLAVPVVLLGTFGVMAASGFSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +     +   S   +           +    +      V 
Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERIMAEEHLSPREATRKSMGEISGALVGIALVLSAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFG   G   + F++T+  ++ +S+  A+    A+   I++                 
Sbjct: 456 MAFFGGSTGEIYKQFSVTIVSAMALSVLVALVFTPALCATILKPHAEAKGGFANWFGGHF 515

Query: 534 IPDCIAIQF 542
                 +  
Sbjct: 516 ETRFGRLTR 524



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 54/133 (40%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G  A  G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 LRATLIPTLAVPVVLLGTFGVMAASGFSINTLTMLAMVLAIGLLVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           +    +S R+   KS+ E  G  V  ++      +PMA +G   G +   F++ +   + 
Sbjct: 420 MAEEHLSPREATRKSMGEISGALVGIALVLSAVFVPMAFFGGSTGEIYKQFSVTIVSAMA 479

Query: 807 VAASSSIFIAAPI 819
           ++   ++     +
Sbjct: 480 LSVLVALVFTPAL 492



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIG 731
            +S  A+ + +   ++ W   +  I  + + I   L   A  G + N       +LT++G
Sbjct: 877 ALSLAAVFLCLAALYESWVIPVAVILAMPVGIIGAL-IGAWLGGQANGVYFQVGLLTVVG 935

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +  + +++ +  R  M+             ++        + TS+A  + V+P+ +  G
Sbjct: 936 LTGKNGIMIVEFARDRMRTL--GEDALTAAVEAARLRFRPILMTSLAFTLGVVPLILSTG 993

Query: 792 S 792
           +
Sbjct: 994 A 994


>gi|320666844|gb|EFX33823.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family precursor
           [Escherichia coli O157:H7 str. LSU-61]
          Length = 996

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 62/599 (10%), Positives = 163/599 (27%), Gaps = 29/599 (4%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNS 124
           V   +    ++  + +        +     +  ITL+F      +    +V   LQ    
Sbjct: 19  VQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATP 78

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
            L  + ++  +         ++++    D   +   + S  +     D +    S     
Sbjct: 79  LLPQEVQQQGISVEKSSSSYLMVAGFVSDNPDTTQDDISDYVASNVKDTLSRLNSVGDVQ 138

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                   +    D   L +   T   +     + N+       G             + 
Sbjct: 139 LFGAQ-YAMRIWLDADLLNKYKLTPVDVINQLKVQNDQIAAGQLGETPALPGQQLNASII 197

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            +  +                 +                      +            + 
Sbjct: 198 AQTRL-------------KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARIN 244

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                          +   T +      A L+         +           S      
Sbjct: 245 GKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVK 304

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+VL I
Sbjct: 305 TLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAI 364

Query: 425 GLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           GL VD  I+V E +     +++     + +   S+    +    +      + + FFGG 
Sbjct: 365 GLLVDDAIVVVENVERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGS 424

Query: 484 ---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSR 530
                R F+IT+  ++ +S+  A+ +  A+   +           +       +      
Sbjct: 425 TGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPTSAEHHENKGGFFGWFNTTFDHS 484

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                + +         + +  +++ +   +  L         + +G     +       
Sbjct: 485 VNHYTNSVGKILGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGAT 544

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               +  L+ +    +  +  + E  F V      G +         +K         +
Sbjct: 545 QERTQKVLDQVTDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDEN 603



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 222 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 281

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 282 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 341

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 342 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 399

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 400 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 459

Query: 825 D 825
            
Sbjct: 460 K 460



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
             +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 817 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 876

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 877 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 934

Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 935 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 980


>gi|125973420|ref|YP_001037330.1| protein translocase subunit secF [Clostridium thermocellum ATCC
           27405]
 gi|256004399|ref|ZP_05429380.1| protein-export membrane protein SecF [Clostridium thermocellum DSM
           2360]
 gi|125713645|gb|ABN52137.1| protein translocase subunit secF [Clostridium thermocellum ATCC
           27405]
 gi|255991683|gb|EEU01784.1| protein-export membrane protein SecF [Clostridium thermocellum DSM
           2360]
 gi|316940344|gb|ADU74378.1| protein-export membrane protein SecF [Clostridium thermocellum DSM
           1313]
          Length = 318

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 139/312 (44%), Gaps = 18/312 (5%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGL-NYGIDFKGGIQLGVLANR-------- 587
                ++  R +   +S +  +  +  L   G  N  I F+GG Q+ +            
Sbjct: 1   MFNFDYVGKRKYFFILSTVLLLIGLVALIVRGGLNLDIQFRGGTQIEIEMENGDFDVIKA 60

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                              +F   + ++     +    G      R   +   K    V 
Sbjct: 61  ENIAKEAIGKSGIHVQKSYTFNPTNSDEAISFLVIKSSGKLTDDERNKVLDALKAEFNVK 120

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL----GAITTLILD 703
            +       V P I  EL+ KG++ V +S I +++YI IRF     L     A+  ++ D
Sbjct: 121 ENGEMRVRDVDPSIGAELLTKGLLAVALSLILLILYIGIRFNIMSGLLAGFTAVVAVLHD 180

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   +  +A+F I  N + +AAVLT++GYSVND +V+YDR+R+N +  +   S R +++ 
Sbjct: 181 VLMMVAVYAVFNIPVNESFIAAVLTILGYSVNDTIVIYDRIRENSR-ISRKDSIRTIVNN 239

Query: 764 SINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           SI +++ R++ TS+   ISV+ +  +    G   +  F  P+  G++    SSIFIA+P+
Sbjct: 240 SITQSMSRTINTSVTTLISVITVYAFAAYNGIGSMKEFTFPLIIGLICGTYSSIFIASPL 299

Query: 820 LLFIYDWRAKNA 831
              + + +AK  
Sbjct: 300 WELLKEKQAKRK 311


>gi|326797473|ref|YP_004315292.1| acriflavin resistance protein [Sphingobacterium sp. 21]
 gi|326548237|gb|ADZ76622.1| acriflavin resistance protein [Sphingobacterium sp. 21]
          Length = 1038

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 71/590 (12%), Positives = 169/590 (28%), Gaps = 42/590 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  ++   G++           +  FPS  P                     
Sbjct: 9   KRPVLTIVMNLILILFGII-----GYTFLGIREFPSIDPPIV---------SVRTNYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +        S  Q  + I + F   +  E  A+ V   +  
Sbjct: 55  NPDIIESQITEPLEKSINQIDGIRNISSSSNQGSSNINIEFVLGKNLEEAANDVRDKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +V+  + +   +L+   +       ++ +         ++       
Sbjct: 115 ALRSLPQDIDAPPVVSKADADSEPILT-LTVRSDTRDPLDLNDIAENVIAQRLQTLPGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    +P RL     T   +     L N               +     
Sbjct: 174 TVQIWGQQRYAMRLWIEPMRLAAYGLTPLDVRNALTLQNVELPSGKITGANTELTVKTAG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +                       +     G R                +    
Sbjct: 234 NLVTEEDF--------------------NRLIIKTDGNRIIRFSDVGRAVLGPENIETKM 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +   +       +   +     E        ++       +  V   N      S + 
Sbjct: 274 TESGIPMVGLAVIPQPGTNYIEIAEAFYKRIEQIKNEIPTDIILDVALDNTLFIKKSVTE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV++++F+              I +++I T  ++ L G ++ + ++  IV
Sbjct: 334 VAETIAIALVLVILIIFLFFRNWGIAFRPLIDIPVSLIATFFIMYLFGFSINVLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478
           L  GL VD  I+V E I ++  +  S   +   G +    A  +I  +     +  + L 
Sbjct: 394 LATGLVVDDGIVVTENIYKKVEEGMSPMQAAIKGSNEIFFAVISISITLAAVFLPVMFLE 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
            F G   R F + +  ++LIS F ++++   +  ++++    K      L+  + +    
Sbjct: 454 GFVGRLFREFGVVIASAVLISAFVSLTLTPMLNAYLMKKGGTKHSRFYELTEPYFVKMTT 513

Query: 539 ----AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               ++       W     +      I   +TH       ++    + V 
Sbjct: 514 GYGKSLTHFLQHKWLSFPILFICFGLIAFFWTHIKKETAPYEDRSLIRVN 563



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           + I+ + +++ I++ F+ W  A   +  + + +  T     LFG   N+  + A++   G
Sbjct: 338 IAIALVLVILIIFLFFRNWGIAFRPLIDIPVSLIATFFIMYLFGFSINVLTLLAIVLATG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
             V+D +VV + +    K     +S      K  NE     +  S+      LP+     
Sbjct: 398 LVVDDGIVVTENI---YKKVEEGMSPMQAAIKGSNEIFFAVISISITLAAVFLPVMFLEG 454

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
           + G +   F + +A  ++++A  S+ +   +    +     K++R
Sbjct: 455 FVGRLFREFGVVIASAVLISAFVSLTLTPMLNAYLMKKGGTKHSR 499



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      I T+ + +   L    + G  +N+ +    + LIG    + +++ +      
Sbjct: 876  SFLDPFIIILTVPMAVAGALLSLWVVGESWNVFSQIGTIMLIGLVTKNGILIVEFAN--- 932

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVIG--SFAIPMAFGI 805
            +L     + ++ I ++    L   + TS A  +  LP+A+  G +        + +  G 
Sbjct: 933  QLKEEGKTVKEAILEASEARLRPILMTSFAIALGALPIALALGAAATSRIGMGVVIVGGT 992

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            + +   ++F+   I          N
Sbjct: 993  IFSLILTLFVIPAIYSLWSREYKPN 1017


>gi|238913271|ref|ZP_04657108.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 1055

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 73/587 (12%), Positives = 169/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRIWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +              I        I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPVLSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F RA    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDRASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGR--SVYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G   S+ + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPVLSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|58583017|ref|YP_202033.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188577843|ref|YP_001914772.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58427611|gb|AAW76648.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|188522295|gb|ACD60240.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 1041

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/678 (11%), Positives = 186/678 (27%), Gaps = 43/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P              ++      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVNVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  SR  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDGLAGIEGISTIEAHSRNGSSDISIEFVQSRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARAPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARDLTVADVEAALQNENVEVPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLNKGEGGYVVRLGDVARVELSSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +       A   A  ++          V          +    
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVARKARARAIEVQKSLPQGTNIFVAFDTTTFIDAAVERV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LVL+V+++ +   +  L+   ++ + +I +   L     ++ L ++  +VL
Sbjct: 335 YHTLVEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIASFIALYAFDFSINLLTLLALVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E I+      +    +   G  +    +  +    +   V + F  G
Sbjct: 395 CIGLVVDDAIVVVENIQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFVPVGFLQG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP---- 535
                 R  A+ +  ++ IS F A+++   M   ++R       +         +     
Sbjct: 455 NTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRAHGQAKPNRFHQWFDGRMQAVSG 514

Query: 536 -DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +++    R W   + +L ++ +   L     +     +      ++ + P      
Sbjct: 515 AYGRSLERHVHRTWVFALLMLLALGASAWLMGRIPSEVAPAEDRGNFQIMIDGPEGAGFD 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +  +  Q+ DI       +K  +      PG   +   +         +     T   T
Sbjct: 575 YTVGQMHQVEDILRPFVGPDKPIVRANPRVPGSFGSSEEMHTGRVSVFLQDWEKRTRPTT 634

Query: 655 EIVGPKISRELIRKGIVG 672
           E+      +  +  G+  
Sbjct: 635 EVADEVQQKLNVLSGVRA 652



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 7/158 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 859  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     S    I  S +  L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDEGRSVHAAIVASASVRLRPILMTSIATVVGAIPLVV 975

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             GG       +  + + FG+ ++   S+++       I
Sbjct: 976  AGGPGSASRATIGVVVIFGVSLSTVLSLYVVPAFYSLI 1013



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL    T+ + +  +      F    NL  + A++  IG  V+D +VV + +    + 
Sbjct: 357 RAALIPAVTVPVCLIASFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENI---QRR 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                       +   +     + T+       +P+    G+    F
Sbjct: 414 IDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFVPVGFLQGNTGRLF 460


>gi|83592454|ref|YP_426206.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodospirillum rubrum ATCC
           11170]
 gi|83575368|gb|ABC21919.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodospirillum rubrum ATCC
           11170]
          Length = 1052

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 83/683 (12%), Positives = 183/683 (26%), Gaps = 35/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +    I   G++      LP   + ++P+  P     L L      +      
Sbjct: 7   KRPILAWVFAIFISIAGIIA-----LPLLPVAQYPNVAPPQ---LSL------YTTYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
               +   +    +E  + +        +        I  +F      +  +  V   ++
Sbjct: 53  SPQEIYQGVTRLIEEELNSVDNLIYFESTSDSTGGITINATFQPGTNLQQASVNVQNAIR 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L        +         ++L            +     + R  + ++   +  
Sbjct: 113 SVASRLPAAVTAQGVTVEEVTAGFLMLITLTSTDGAVDEVGLGDYLNRNMLGELRRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP ++  L  T   ++      N        G      S    
Sbjct: 173 GKAQLFSAQR-AMRVWIDPDKMVGLKLTVGDINTAITTQNAQVAAGQIGAAPNPVSQDLT 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  K +++ I              +    +                 +          
Sbjct: 232 ATVLVKGQLTDIE-------------EFGNIVLRANPDGSTVRLKDVARLEVGAESYNFS 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L             +  +   T          L           V          S  
Sbjct: 279 SRLNGQPSAAVAIQLSSTGNAVATSAAIKAKLDELSRFFPSGVQYDVPYDTSPFVSASIQ 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T     GLV +V+F+ +   ++ ++    + + ++ T A +   G ++ + ++  +
Sbjct: 339 KVLMTLLEAVGLVFLVMFVFLQNFRYTVIPTLVVPIALLGTSAAMLATGFSINVLTMFAM 398

Query: 421 VLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E +      +  S   + +   ++  S I    +      + + F
Sbjct: 399 VLAIGILVDDAIVVVENVERIMAEEGLSPKAATNKAMTQITSAILGITLVLSSVFIPMAF 458

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIP 535
           F G      R F++TM +SIL S F A+S+  A+   F+   K+           F    
Sbjct: 459 FPGSTGIIYRQFSLTMVVSILFSAFLALSLTPALCATFLKPIKQGHHDKKGLGGWFNRKF 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           D +   + R+    V  +    +  + L+   G  +     G +         VD+    
Sbjct: 519 DRLTAGYSRSVTGLVRRAGRVMVVYLALVVGLGYLFVNLPSGFVPNEDQGYFLVDVQGPP 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               +  +  I       +    VR                     +T            
Sbjct: 579 EASANRTVASIKQIEEIFKGESAVRDVLVIQGFSFSGSGANAAMVFVTLKDWKERGAGNT 638

Query: 656 IVGPKISRELIRKGIV-GVIISA 677
           +        +    +      + 
Sbjct: 639 VDEITERVNMRLFALKDATSFAL 661



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 90/235 (38%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  + S +        +       G++VA +  ++    +++   P 
Sbjct: 260 VRLKDVARLEVGAESYNFSSRLNGQPSAAVAIQLSSTGNAVATSAAIKAKLDELSRFFPS 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            I+K ++ ++ +   + + +++  + + + +     + + +  T
Sbjct: 320 GVQYDVPYDTSPFVSASIQKVLMTLLEAVGLVFLVMFVFLQNFRYTVIPTLVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  + A++  IG  V+D +VV + +     +    +S +   +K++ +
Sbjct: 380 SAAMLATGFSINVLTMFAMVLAIGILVDDAIVVVENV--ERIMAEEGLSPKAATNKAMTQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
                +  ++      +PMA + GS       F++ M   I+ +A  ++ +   +
Sbjct: 438 ITSAILGITLVLSSVFIPMAFFPGSTGIIYRQFSLTMVVSILFSAFLALSLTPAL 492



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/200 (11%), Positives = 63/200 (31%), Gaps = 13/200 (6%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
              +        +       ++  +              +   E+       ++     + 
Sbjct: 818  TVRIAGEPVPGQSTGAAIAEMERLASELPEGFGFEWTGQALEEIKSGSQAPMLFGLSILF 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVND 736
            +++ +      W   L     L++ +       A+   G+  ++     ++ +IG S  +
Sbjct: 878  VFLLLAGLYESWSIPLS--VMLVVPLGAIGCVLAVMMRGMPNDIYFKVGLIAIIGLSAKN 935

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
             +++ +  +          S  D    +        V TS+A  + V+P+A+  G    S
Sbjct: 936  AILIVEFAKDYFAQ---GRSLFDSAVDAARVRFRPIVMTSLAFALGVVPLAIATGPSAAS 992

Query: 797  ---FAIPMAFGIVVAASSSI 813
                   +  GI++    +I
Sbjct: 993  QNAIGTGVLGGIILGTILAI 1012


>gi|262277721|ref|ZP_06055514.1| AcrB/AcrD/AcrF family protein [alpha proteobacterium HIMB114]
 gi|262224824|gb|EEY75283.1| AcrB/AcrD/AcrF family protein [alpha proteobacterium HIMB114]
          Length = 1034

 Score =  174 bits (440), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/680 (11%), Positives = 182/680 (26%), Gaps = 42/680 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  ++   GL+        +  L   P      ++++  D            
Sbjct: 9   KRPVVATVMSLVLVIFGLVT-----FNKIPLRELPDVD-SAKVNIRTD--------YTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  +    ++             +    ++ ITL F      +  A+ V   +  
Sbjct: 55  SATIIDTQITQKIEDRIGGTPGIVTIDSTSEDGRSSITLEFDLDVDLDTAANDVREKIAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L    +   +  ++    + +        +    +E +    R   D         
Sbjct: 115 IVDNLPEGAEPPEIYKSSAARTTTMWLAFQSPSMSD--LELTDYADRYLKDLFSTVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP  +     T  ++       N          +++        
Sbjct: 173 NIRLGGEREFSLRVWLDPIAMAARNITVLELESILKKENVEFPAGKIESKYV-------- 224

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       L         K       +                 +           
Sbjct: 225 -----------DLVIKVEKAYKKLQDYKDLVLKRAGDGSLIKLGDIARLEFGALNSSTLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +              +           V          +   
Sbjct: 274 KGNGNQTVGIGIYQQSTANTIEVARAVKKKIKEIEPSLPEDSTLTVSFDRSTYIEAAIGE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++V+++ +      ++   +I + +I T   + L G TL L ++  +V
Sbjct: 334 VYKTLFIAVILVVLVIYLFLGNITGVIIPAVAIPVALISTFLAIYLAGFTLNLFTLMALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I     K ++   +   G  +    I  + +  +   + L F  
Sbjct: 394 LAIGIVVDDAIVMGENISRRLEKGETALVAAYRGSKQVAFAIIATTVVLISVFLPLVFIK 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSRFFLIP 535
           G   +     A+T+  +++IS F A+S+   +    ++  K K    +      + F   
Sbjct: 454 GLIGKLFSEMALTLSFAVIISSFVALSLSPMIGSKFLKTSKKKPGFILKFEKYLQAFQKF 513

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               + FM  R   + + +   + SI +LF       +  +       +  +  + S   
Sbjct: 514 YEETLHFMLKRKKSIFVFLGTVLVSIIILFNFTKKELLPKEDRGVF-FVIIQAPEGSGFN 572

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              E     +  F    G+      L   PG      ++       + E          +
Sbjct: 573 YTSEKALNIESKFLPKVGKGEIRRLLLRVPGFGKRSKQLNSAFIIVLLEDWAKRKRSGQQ 632

Query: 656 IVGPKISRELIRKGIVGVII 675
           I+           G+    +
Sbjct: 633 ILRESFGIISSVPGVRAFPV 652



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 82/238 (34%), Gaps = 11/238 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L S  +   +     G   +          + A  + ++ ++  + E   L+   +   
Sbjct: 266 ALNSSTLFKGNGNQTVGIGIYQQSTANTIEVARAVKKKIKEIEPSLPEDSTLTVSFDRST 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI-TTLILDITKTLGFFALFG 715
                  E+ +   + VI+  + + +++           AI   LI           L G
Sbjct: 326 YIEAAIGEVYKTLFIAVILVVLVIYLFLGNITGVIIPAVAIPVALISTFLAI----YLAG 381

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL  + A++  IG  V+D +V+ + +    +      +      +   +     + T
Sbjct: 382 FTLNLFTLMALVLAIGIVVDDAIVMGENI---SRRLEKGETALVAAYRGSKQVAFAIIAT 438

Query: 776 SMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++      LP+    G +   F   A+ ++F +++++  ++ ++  I         K 
Sbjct: 439 TVVLISVFLPLVFIKGLIGKLFSEMALTLSFAVIISSFVALSLSPMIGSKFLKTSKKK 496



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 63/167 (37%), Gaps = 13/167 (7%)

Query: 671  VGVIISAIAMLIY--IWIRFK-WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAA 725
            + +I     +  Y  +  +F+ W   L     L + +    G   L   G   N+ +   
Sbjct: 857  IYLIFVLALVTAYLSMAAQFESWRHPL--TIMLTVPLAIFGGIIGLLVAGSSLNIYSQIG 914

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG +  + +++ +      +L          I ++    L   + TS++    V+P
Sbjct: 915  LIILIGLAAKNGILIVEFAN---QLRAEGKDIEKAILEAAKIRLRPILMTSLSTIAGVVP 971

Query: 786  MAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + +  G    S     + +  G++ +   ++++   I L I     +
Sbjct: 972  LIIGSGPGEASRLTVGVVIFSGMIFSTFFTLYVIPTIYLLIGRNTQR 1018


>gi|254706131|ref|ZP_05167959.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis M163/99/10]
          Length = 1074

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 60/547 (10%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLTLTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAXQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     +    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAKGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 42.0 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 64/151 (42%), Gaps = 12/151 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRK 746
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV    +R+  
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENVERVMA 423

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
                   +  ++   +++ E     +  ++      +P+A      G++   FA+ ++ 
Sbjct: 424 ET-----GLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSV 478

Query: 804 GIVVAASSSIFIAAPIL-LFIYDWRAKNARI 833
            ++++A +++ ++  +  +F+   + +   +
Sbjct: 479 AMLISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|119713412|gb|ABL97474.1| protein-export membrane protein SecF [uncultured marine bacterium
           HF130_81H07]
          Length = 300

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 89/287 (31%), Positives = 157/287 (54%), Gaps = 8/287 (2%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DLSVVRS 596
           + IQFM+ R   +  S    + SI  L    L  G+DF GG+ + +     + DL  +R 
Sbjct: 1   MNIQFMKFRKLALTFSFALLLISIVSLVFKNLELGLDFTGGVLVEIQLKENLEDLEQIRG 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L+   I +        + +  +++      S A++       K + E      ++  E 
Sbjct: 61  LLDEKNIDNYVLNFSGSQNDVSIKIPGGADSSNAES------LKIVLEENYEFDLRKEEF 114

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           +GP+I  EL  +G +G++++ + M +YI  RF++ FA+GAI  L+ D+   +G F+LF I
Sbjct: 115 IGPQIGEELRDQGGLGLLLALLIMAVYIMFRFQYKFAVGAIFALVHDVLIVVGMFSLFSI 174

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           +F+LT +AAVL +IGYS+ND +VV DR+R+N +    S +   LID+S+ + LGR++ TS
Sbjct: 175 DFDLTVLAAVLAVIGYSLNDTIVVSDRIRENFRKKRRSETIA-LIDRSLTQMLGRTLITS 233

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +   + +  + ++GG  I +F+I +  G++    SSI+I    L+ +
Sbjct: 234 LTTLLVLFALLIFGGDAIQNFSIALIIGVIAGTYSSIYIVCNTLISM 280


>gi|226225928|ref|YP_002760034.1| multidrug resistance protein [Gemmatimonas aurantiaca T-27]
 gi|226089119|dbj|BAH37564.1| multidrug resistance protein [Gemmatimonas aurantiaca T-27]
          Length = 1037

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 71/612 (11%), Positives = 171/612 (27%), Gaps = 47/612 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ S I   G+L        +  +   P+                    L   
Sbjct: 9   RRPVMTTLVMSAILIFGVLA-----YQRLPVSDLPTIDYPTIT---------VSANLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +           Q    +T+ F   R  +  A  V   +  
Sbjct: 55  SPEVMAASVATPLEQQFATISGIDNITSGSSQGSTNVTIQFNLDRDIDKAAADVQSGISK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L               +  I++   N D +     E +         ++       
Sbjct: 115 ALRQLPQGINPPSYNKANAADAPIMMYSLNSDVLSR--TELNEYAETFIAQRLSTITGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  + DPS L Q      ++       N++    +        +     
Sbjct: 173 QVQVFGSAKYAVRVQLDPSALAQRGIGIDEVQSAINSGNSNSPAGVLMGPNQSFTLQATG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +++  E                       +                N+   L  +    
Sbjct: 233 QLKNAAEFRA--------------------LVVAYRNGTPVRLGDLGNVFDGLQNMRGMS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +   T +        +     P            +   S   
Sbjct: 273 ELNGRSNISLAIIRQPGANTVGTAKGVDAAMQEMLPQLPPSVQVETIFNRAESIEHSVWD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +   +  ++   ++  ++I T  ++  LG +L   ++  + 
Sbjct: 333 VQFTLLLTVALVVMVIFLFLRNMRATIIPSLALPFSIIGTCIVMYALGFSLNNLTLMALT 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E I       +    +   G      TI    ++ +   + L F  
Sbjct: 393 LAVGFVVDDAIVMLENIVRHMEMGKGPIRAALDGSREISFTILSMTLSLVAVFIPLLFMP 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLSR 530
              G   R FA+T+G++IL+S F ++++   +                K +S++      
Sbjct: 453 GLVGRLFREFAVTIGVAILVSGFVSLTLTPMLAAKFLKGGEGHAATEGKWRSVERLYQGT 512

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L  D +           +  ++  +   +  +         +  G +Q  V     + 
Sbjct: 513 EKLYVDSLNWVMRHRPLTMLFSALTLAATVVLFVIIPKGFLPSEDTGRLQGSVEGPEGIG 572

Query: 591 LSVVRSNLESLQ 602
              + + +  + 
Sbjct: 573 YDALAAKVREVG 584



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 70/228 (30%), Gaps = 6/228 (2%)

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
             +  +S  N     +  +  Q           V   +++ + ++ P   ++        
Sbjct: 266 QNMRGMSELNGRSNISLAIIRQPGANTVGTAKGVDAAMQEMLPQLPPSVQVETIFNRAES 325

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           I   +       ++  A+ +++           +     L   I  T       G   N 
Sbjct: 326 IEHSVWDVQFTLLLTVALVVMVIFLFLRNMRATIIPSLALPFSIIGTCIVMYALGFSLNN 385

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             + A+   +G+ V+D +V+ + +   ++                 E     +  +++  
Sbjct: 386 LTLMALTLAVGFVVDDAIVMLENI---VRHMEMGKGPIRAALDGSREISFTILSMTLSLV 442

Query: 781 ISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              +P+    G V      FA+ +   I+V+   S+ +   +      
Sbjct: 443 AVFIPLLFMPGLVGRLFREFAVTIGVAILVSGFVSLTLTPMLAAKFLK 490



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 69/172 (40%), Gaps = 7/172 (4%)

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIW--IRFKWYFALGAITTLILDITKTLGFFALFG 715
            G   +    + G++ +++ AI ++  +   +   +   L  ++ L       L    LFG
Sbjct: 842  GDTQAFAQAQSGLLALLVVAIFVIYVVLGILYESFIHPLTILSGLPFAAVGALATLMLFG 901

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + ++ A   V+ LIG    + +++ D   +        ++  D I ++          T
Sbjct: 902  KDLSVYAYVGVIMLIGLVKKNAIMMIDFAIE--AERKEGMNPTDAILEAARVRFRPITMT 959

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +MAA +  LP+A+    G        + +  G+  +   ++++   +  ++ 
Sbjct: 960  TMAALMGTLPIAIGYGAGAESRQPLGLAVVGGLAFSQLITLYVTPVVYTYLD 1011


>gi|207108203|ref|ZP_03242365.1| preprotein translocase subunit SecF [Helicobacter pylori
           HPKX_438_CA4C1]
          Length = 286

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 130/244 (53%), Gaps = 3/244 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V   +   +  VR   E          +  G K  ++     P    A+   L  +  
Sbjct: 1   MQVRYTQNAPIKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVA 58

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            I +      I+  + VGP++  EL  KGI+ +I++ +A+++Y+  R++W FAL ++  L
Sbjct: 59  NILKPSGDFEIRKFDTVGPRVGSELKEKGILSLILALMAIMVYVSFRYEWRFALASVIAL 118

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           + D+        +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M L   + +    
Sbjct: 119 VHDVILVASSVIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM-LSQKTKNAIQA 177

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ID++I+ TL R++ TS+  F  VL + V+G  +I  F++PM  G +V   SSIFIA  + 
Sbjct: 178 IDEAISSTLTRTLLTSLTVFFVVLILCVFGSKIIIGFSLPMLIGTIVGTYSSIFIAPKVA 237

Query: 821 LFIY 824
           L + 
Sbjct: 238 LLLG 241


>gi|225159129|ref|ZP_03725435.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Opitutaceae bacterium TAV2]
 gi|224802284|gb|EEG20550.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Opitutaceae bacterium TAV2]
          Length = 1073

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 72/563 (12%), Positives = 160/563 (28%), Gaps = 39/563 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++  IG +           + +FP  +P               + ++   
Sbjct: 32  RPIVAMVIAILMVVIGAVSI-----TSLPIAQFPDIVPPE-------------VQIKAMY 73

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   +    Q  +T++FA             +
Sbjct: 74  PGADAMTLEQAVATPIEQQMSGVDNMNYMYSVNANNGQMTLTVNFALGTDPNTDQVLAQM 133

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                +S+L    +   +         +V+   +       +   +        D +   
Sbjct: 134 RASQADSQLPQSVRDQGVTVQKSLASPLVVFALSSPNGTYDSTFLANYAYINLNDAMTRV 193

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P +L +L  T  ++       N        G   +    
Sbjct: 194 KGIASVTVFGAGQYAMRVWIRPDQLAKLNITVPEIVSAIQSQNTVNPSGQIGGDPVPKGQ 253

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  +  +                 +    +   +             +       
Sbjct: 254 EFTWAVRSQGRLETEE-------------QFSQIVLRADPDGSIVRLGDVARLELGSQTY 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +       A  L A L          ++      A   
Sbjct: 301 GLHGTLDGKPSAILALYQLPGSNALAAANGAKELMAELSKSFPDDMTYVLAIDTTLAVTE 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                  T      LV+IV+F+ +   +  L+   ++ +++I T AL  LLG +L   S+
Sbjct: 361 GMKEIVHTLVEALILVIIVVFVFLQGWRATLIPLLAVPVSLIGTFALFPLLGFSLNTLSL 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IGL VD  I+V E +     K  S   +           +    I      +  
Sbjct: 421 FGLVLAIGLVVDDAIVVVEAVEHHIEKGLSPRDATLKAMQEVSGPVIAIAIILAAVFIPT 480

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + FA+T+ +S+L+S F A+++  A+   +++ K    +     + F  I
Sbjct: 481 AFIPGITGRLYQQFAVTIAVSVLLSAFNALTLSPALSSLLLKPKTKGGLLQPFYNGFNRI 540

Query: 535 PDCIAIQFMRARFWGVGISILFS 557
                  ++    + +  S++  
Sbjct: 541 FGRATDGYVGICRFFIRKSLVAI 563



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 74/185 (40%), Gaps = 9/185 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                ++  + K   + +      +T +   +  +E++   +  +I+  I + +++    
Sbjct: 329 NGAKELMAELSKSFPDDMTYVLAIDTTLAVTEGMKEIVHTLVEALILVIIVVFVFLQ--- 385

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T   F L G   N  ++  ++  IG  V+D +VV + +    
Sbjct: 386 GWRATLIPLLAVPVSLIGTFALFPLLGFSLNTLSLFGLVLAIGLVVDDAIVVVEAV---E 442

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                 +S RD   K++ E  G  +  ++      +P A   G        FA+ +A  +
Sbjct: 443 HHIEKGLSPRDATLKAMQEVSGPVIAIAIILAAVFIPTAFIPGITGRLYQQFAVTIAVSV 502

Query: 806 VVAAS 810
           +++A 
Sbjct: 503 LLSAF 507



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 75/256 (29%), Gaps = 9/256 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                AN  +      + +ES Q  + + +        L         S      LE    
Sbjct: 810  YVRNANGDMVPLSALTKVESTQGPEFTMRYNLFRSAQLNISAAPGYSSAQAMAALEETFA 869

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                               +  + +    I     S   + + +  +++ W      +  
Sbjct: 870  ATMPKEMGYDYLGMSFQEKQAQQGIGAAAIFS--FSLFCVFLILAAQYESWTLPFSVLLG 927

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
              + I        +   E N+ A   ++ LIG +  + +++ +  +             D
Sbjct: 928  TPIAIFGAFLGLMVGHYENNIYAQIGLVMLIGLAAKNAILIVEFAK---MGVEQGKPLID 984

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIA 816
               +     L   + TS A  +  +P+A   G+           +  G++ A   +IF+ 
Sbjct: 985  ATLEGARLRLRPILMTSFAFILGCVPLAKAAGAGALSRQVMGFAVIGGMLAATLLAIFLI 1044

Query: 817  APILLFIYDWRAKNAR 832
                  +  +  ++ +
Sbjct: 1045 PVTFYLVERFTVRHQK 1060


>gi|330869644|gb|EGH04353.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 943

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 159/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTELDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVTEE-------------EFENVVVRAGADGEITRLKDVARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVQATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDRILGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQD 577



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVQATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|260774863|ref|ZP_05883764.1| RND multidrug efflux transporter [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609118|gb|EEX35276.1| RND multidrug efflux transporter [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1036

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 64/651 (9%), Positives = 179/651 (27%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+L  ++C  G++        +  +   P                      E  
Sbjct: 9   KRPVAAVVLSLLLCVFGIVS-----FSKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITTALEDQLSGISGIDEIESTTRNGSSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +  + R  +D+  +     
Sbjct: 115 AQRSLPDEADDPIVYKNNGSGEASLYINLSSSE--MDRTQLTDYVDRVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P+++     TT+ ++      N    G                
Sbjct: 173 SVDVSGGLYKVMYVKLKPAQMAGRGVTTSDITAALNNENIESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V    I ++  TA            +          +     ++           
Sbjct: 219 -----VRNDQIVMSVRTARSYNVAEDFEYLVVKRASDNTPIYLKDVADVYIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S + 
Sbjct: 274 KSDGVVNVSMGIVPQSDANPLEVADLVHDEVEKIQQFLPSGTRLAIDYDSTVFIERSIAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVVATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIPD 536
           G        F++ + +S++ S   A+++   +   +++     +            L   
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQLLKANVKPNRFNRFIDRMFGRLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     ++      I+ +           +   +       +     R  D +    
Sbjct: 514 YRKVLRGALKWKWAAPLIILTCIGGSWGLMKQVPSQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       GE          P            V   + +   
Sbjct: 574 MAANMDIVEERLLPLLGEGFLKSFSIQSPAFGGNAGDQTGFVIMILDDWND 624



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 90/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDQIVMSVRTARSYNVAEDFEYLVVKRASDNTPIYLKDVADVYIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V ++V  ++ +I           +    +  + R        +
Sbjct: 279 VNVSMGIVPQSDANPLEVADLVHDEVEKIQQFLPSGTRLAIDYDSTVFIERSIAEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFMAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGEKPLLAAYKGTREVGFAVVATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQLLKANVKPNR 498



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 8/132 (6%)

Query: 697  ITTLILDITKTLGFFALFGIE--FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +    + +    GF  LF +    N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMFTVPMGVFGGFLGLFFMSQGLNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
              F   I  +    L   + T+       +P+ +    G     +    + FG+  A   
Sbjct: 937  FEFEKAIVDAAARRLRPIMMTAFTTLAGAIPLLLSTGAGYESRVAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFI 823
            ++F+   +   I
Sbjct: 997  TLFVIPAMYRLI 1008


>gi|262278395|ref|ZP_06056180.1| multidrug ABC transporter [Acinetobacter calcoaceticus RUH2202]
 gi|262258746|gb|EEY77479.1| multidrug ABC transporter [Acinetobacter calcoaceticus RUH2202]
          Length = 1059

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 149/548 (27%), Gaps = 33/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPTNSPVQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 +    +      
Sbjct: 236 NAQGRL---------------TTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRSSIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIEAGLSPRDATYRAMREVSGPIIAIALTLVAVFVPLAFMT 460

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +  +          
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALAAMLLKGHDAKPDALTRIMNRIFGRFFA 520

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 521 LFNRVFTR 528



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 119/395 (30%), Gaps = 18/395 (4%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
            ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 652  AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 711

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   +  M           ++D++ +           +      + G      F+   
Sbjct: 712  AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 771

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +          L +         V  S+L ++                   
Sbjct: 772  RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 831

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 832  INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 890

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++     L  I  + + I   L    L G + N+     ++ L+G +  + ++
Sbjct: 891  FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTGGDNNIFTQIGLMVLVGLACKNAIL 950

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  R+   L     +  +   ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 951  IVEFARE---LEMQGATAFNAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 1007

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I + FG++      +F+     + I    +K+ 
Sbjct: 1008 MGIAVFFGMIGVTLFGLFLTPAFYVLIRKLNSKHK 1042



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 363 WRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S RD   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 423 A---GLSPRDATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 480 ISAFNSLTLSPALAAMLLK 498


>gi|254424651|ref|ZP_05038369.1| RND transporter, HAE1 family [Synechococcus sp. PCC 7335]
 gi|196192140|gb|EDX87104.1| RND transporter, HAE1 family [Synechococcus sp. PCC 7335]
          Length = 1092

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 63/595 (10%), Positives = 160/595 (26%), Gaps = 30/595 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  IG +       P   ++  P   P          +          
Sbjct: 9   KRPVLTTVCTIVIMLIGGVCI-----PLLPINYLPDISPV---------QIRVSSFYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   V   +    +   + +              + I++ F     K+     V   +  
Sbjct: 55  DVQTVENTVTTILEREINGVAGMDYISSETYAGTSNISVYFPPGSDKDISQVNVQNRVAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL    ++  + T       +++     +      I  S  +    +D +   +   
Sbjct: 115 ALPKLPSTVQQLGVTTKATSSSILMVYGIYGENGEYDDIFISDYVDANIVDTLKRIKGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DPS L     T   +S      +        G   + +    + 
Sbjct: 175 DVTVFGSKQNAMRLWLDPSALAARGLTILDVSNALRTQSVVVGAGAIGQAPVPEGQNFEL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +   +                +    +                             
Sbjct: 235 PIRIQGRFTDTA-------------EFENLVVKTLPDGGLVRLRDVGYAKIGGENYATNA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          S     +          + A L     P     +          S   
Sbjct: 282 LINGQQGVAIAVSQLPGSNALDVGNNTKAVIAELSKKFPPGMTASLVYDTTEFIQVSIQE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T     GLV++V+F+ +   +  ++   +I + ++  L      G +L   ++ G++
Sbjct: 342 VLITLMQAIGLVILVIFIFLQDWRTTIIPAVAIPVALVGALGFAFAFGFSLNSLTLFGLI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I++ E +  +  +      +           +  +++  +   + + FF 
Sbjct: 402 LATGLVVDDAIVIVEAVTTKINEGLLPKQASLAVMDEIAGAVVSTSLVLMAVFIPVAFFP 461

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA+ +  S+ +S F A+S   +M   +++ K  ++   +      L     
Sbjct: 462 GTTGALYQQFALIIAFSVAVSTFNALSFSPSMAAILLKPKSTEAATNHSGRVNPLQWFFN 521

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                +        S++     +  +       G+     + + V +    +   
Sbjct: 522 KFNQAQDWLIAKYRSVVALFVRMRYIIIGVFVLGLIATYQMFMIVPSGFVPNEDQ 576



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 77/200 (38%), Gaps = 9/200 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                V+  + KK    +  S + +T        +E++   +  + +  + + I++    
Sbjct: 306 NNTKAVIAELSKKFPPGMTASLVYDTTEFIQVSIQEVLITLMQAIGLVILVIFIFLQ--- 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +     + + +   LGF   FG   N   +  ++   G  V+D +V+ + +    
Sbjct: 363 DWRTTIIPAVAIPVALVGALGFAFAFGFSLNSLTLFGLILATGLVVDDAIVIVEAV---T 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 +  +      ++E  G  V TS+      +P+A + G+       FA+ +AF +
Sbjct: 420 TKINEGLLPKQASLAVMDEIAGAVVSTSLVLMAVFIPVAFFPGTTGALYQQFALIIAFSV 479

Query: 806 VVAASSSIFIAAPILLFIYD 825
            V+  +++  +  +   +  
Sbjct: 480 AVSTFNALSFSPSMAAILLK 499



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 67/168 (39%), Gaps = 7/168 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            G++      I + + +  +++ Y   +  + T+ L +   L F A+  ++ ++    A++
Sbjct: 880  GLLVFAFGIIMVFLTLSAQYESYIDPIIILLTVPLALLGALSFVAVRDMQNDVYVQVALV 939

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG +  + +++ +   +         +  +   ++        + T++++ +   P+ 
Sbjct: 940  MLIGLASKNAILIVEFANQE---KEAGATIVEAAKRAGEARFRAILMTAVSSLVGFFPLV 996

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +    G +        +  G++V+   S  +   + + I    A   +
Sbjct: 997  ISTGAGSASRRVIGTALFGGLLVSTVLSFLVVPVLYVVIKSLEANFLK 1044


>gi|15677562|ref|NP_274718.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis MC58]
 gi|7226970|gb|AAF42062.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis MC58]
 gi|316985726|gb|EFV64671.1| inner membrane protein [Neisseria meningitidis H44/76]
 gi|325140824|gb|EGC63334.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis CU385]
 gi|325199693|gb|ADY95148.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis H44/76]
          Length = 1067

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 156/574 (27%), Gaps = 48/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS                  + L    
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-------------ITLRATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   +       ++L+F     +     +V  
Sbjct: 50  PGASAQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   
Sbjct: 110 KLSEVLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q          +    DP +L+    + A +       N        G        
Sbjct: 168 EGVGQVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNVQISAGSIGSLPAVRGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  + ++                 +    I          +      +G  +   
Sbjct: 227 TVTATVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +      A L                      
Sbjct: 274 SSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEI 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++
Sbjct: 334 SIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    +       +   V 
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVP 453

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L  F    G   + FA+TM  SI  S F A+++  A+         +K+I          
Sbjct: 454 LAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKG 508

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                  +F        G        +  ++  +
Sbjct: 509 FFGWFNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 102/291 (35%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    +++       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|254295097|ref|YP_003061120.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Hirschia
           baltica ATCC 49814]
 gi|254043628|gb|ACT60423.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Hirschia
           baltica ATCC 49814]
          Length = 1043

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/688 (10%), Positives = 182/688 (26%), Gaps = 42/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L      L    + ++P   P              +       
Sbjct: 8   RPVFAWVIAIVIMLAGALS-----LNSLPIAQYPDIAPTTIT---------INATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + L     +   S     + ITL+F      +    +V   L  
Sbjct: 54  AKSIEDSVTQTIEQQMTGLDGLDYMTSTSSSSGTSSITLTFKTGTDPDTAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +         +++      +     ++       Q ID +   +   
Sbjct: 114 ATPLLPNAVQRQGVTVNKAASGFLLVVGLTSPESTYDTVDLGDFAKTQLIDDVSRLDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +     + +       N+       G     +      
Sbjct: 174 SIQLFGSQ-YAMRIWLDPHKLNKFKLMPSDVIAAIQAQNSQISSGSIGGSPSVEGQEITA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                     +          +      + K         
Sbjct: 233 TITLQSLLTTAD-------------DFKKLLIRSSTEGTPIYLEDVARVEKGAETYSFEA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +   T E        L          +           S S 
Sbjct: 280 RFNRAPAAGFAVSLATGANALDTAELVRARVLELSENFPSDIEIVFPYDATPFIKESISA 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV +V+F+ +   +   +   ++ + ++ T A+L+L G ++ + ++  +V
Sbjct: 340 VEHTLLEAIVLVFLVIFVFLQSLRASFIPMIAVPVVLLGTFAVLALFGYSINVLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFF 479
           L IGL VD  I+V E +         S   +      +     I  + + + +   + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEDGLSPIEATRKSMKQITGALIGIAVVLSSVFIPMAFF 459

Query: 480 FG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G  G   R F++T+  ++ +S+  AI +  A+   I++                +    
Sbjct: 460 PGSVGVIYRQFSVTIVSAMTLSVIVAIVLSPALCATILKNTHGNKSKHWINKPGDMFNTG 519

Query: 538 IAIQFMRA--------RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                           R   + + I   I +I  +    L           + +   +  
Sbjct: 520 FRKLENGYTHMVDRVIRRRWIFVGIFIVISAIAGINFKSLPTSFLPDEDQGMVMTLAQLP 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             +        +      +   +G+    V        + A   +               
Sbjct: 580 VDASQERTRAVMDRLGKYYMEKEGDNLKGVFTVAGFSFAGAGQNMGMSFLPLKDWEERHG 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISA 677
              + + +  + S+      +  +I + 
Sbjct: 640 PANSAQSIAGRASQAFAGD-VEAMIFAI 666



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            P+ L  V    +  +      +                 +++    ++     +++E  
Sbjct: 258 TPIYLEDVARVEKGAETYSFEARFNRAPAAGFAVSLATGANALDTAELVRARVLELSENF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P               +E I      ++ + + + + I++       +   +  + + + 
Sbjct: 318 PSDIEIVFPYDATPFIKESISAVEHTLLEAIVLVFLVIFVFLQSLRASFIPMIAVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    ALFG   N+  + A++  IG  V+D +VV + +     +    +S  +   KS+
Sbjct: 378 GTFAVLALFGYSINVLTMFAMVLAIGLLVDDAIVVVENV--ERVMEEDGLSPIEATRKSM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  +  ++      +PMA + GSV      F++ +   + ++   +I ++  +
Sbjct: 436 KQITGALIGIAVVLSSVFIPMAFFPGSVGVIYRQFSVTIVSAMTLSVIVAIVLSPAL 492



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 78/260 (30%), Gaps = 11/260 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 D  G  ++   +     +  + S       G    + F+G     ++    PG S
Sbjct: 778  YRMQPDDFGEWRVRNASGELTPIEEIIST--EWAFGSPQLKRFNGLPALNIQGAATPGTS 835

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                                           +   +     I+ V+   + +     +  
Sbjct: 836  SGDALNTMESLVDQLPGNLGIAWSGLSAQEKQSGNQATSLYILSVLFIFLCLA---ALYE 892

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +    L IT  +    L G+  ++     +LT +G +  + +++ +  +   
Sbjct: 893  SWTVPIAVLLVAPLGITGAVAAAHLTGLANDVFFQVGILTTVGLASKNAILIIEFAK--- 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP---MAVWGGSVIGSFAIPMAFGI 805
             L            +++   L   + TS+A    VLP       G     +  + +  G+
Sbjct: 950  SLEEQGKELVQATLEAVKMRLRPILMTSLAFGFGVLPLALATGAGAGARIAIGVTVLGGL 1009

Query: 806  VVAASSSIFIAAPILLFIYD 825
            + +   +IF A    + I  
Sbjct: 1010 IASTVFAIFFAPLFYVVIRK 1029


>gi|167771364|ref|ZP_02443417.1| hypothetical protein ANACOL_02730 [Anaerotruncus colihominis DSM
           17241]
 gi|167666004|gb|EDS10134.1| hypothetical protein ANACOL_02730 [Anaerotruncus colihominis DSM
           17241]
          Length = 309

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 134/306 (43%), Gaps = 11/306 (3%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +  +  R     IS    +  I   F  G+   I F GG  +        D +    
Sbjct: 1   MKQVDIVGRRKIWFSISSALIVLIIAASFVLGVKLDIQFSGGTIITYTFTGQADKASFEK 60

Query: 597 NLESLQIGDISFQNFDGEKN---FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            +E      ++ +            +             ++      +           +
Sbjct: 61  TVEDSLGQPVTLREQYDVNTGLPNYIITLTNKSGITPDQQIAVNEALQTQFPDNNVNAAS 120

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLILDITKTLG 709
              V P I R+   K IV V+ ++I M+IYI  RF+    W   + A+  L+ D+    G
Sbjct: 121 ISNVDPTIGRDFFLKSIVAVVAASILMIIYIAFRFRKMNGWSAGVIAVMALLHDLIIAYG 180

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F + G   N + +A +LT++GYS+N+ ++VYDR+R+N +L     +++DL++ S+N+++
Sbjct: 181 AFVICGFPLNDSFIAVMLTILGYSINNTIIVYDRVRENRRLLPVKTTYKDLVNLSVNQSM 240

Query: 770 GRSVYTSMAAFISVLPM----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            RS+ T+++  I+V  +     ++  + I +F++P+  G+     SS+FI+ P+  F  +
Sbjct: 241 TRSINTTVSTVIAVGCVCAMSLIYHVNSILTFSLPLLVGMFAGFFSSMFISGPLWAFWQE 300

Query: 826 WRAKNA 831
            +    
Sbjct: 301 RKRAQK 306


>gi|330810538|ref|YP_004355000.1| Acriflavine resistance protein B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378646|gb|AEA69996.1| Acriflavine resistance protein B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 1048

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 70/615 (11%), Positives = 164/615 (26%), Gaps = 45/615 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        Q  L+++P   P                      
Sbjct: 8   RPIFAWVIAIVIMLAGALSI-----SQLPLEQYPDIAPPTVR---------ISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L     +   S       I+L+F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDNLTYMSASSSSDGSASISLTFTAGTNPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++++    D       +    I    +D I   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGGSDFLMIAALASDNPSVTGTQIGDYISSTLLDSISRIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+ L +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPALLEKYALMPSDVSTALEAQNTEVSAGQLGAMPAVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTVEEFRNVVVKSTSDGAVVLLGDVARVELGSESYDVSS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             A  +     E        L                        S 
Sbjct: 280 ALNGKPAAAMGVQLAAGANALNVGEAVKAKLKELEPFYPTEMQLKNVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 EEVVKSLGEAIVLVVLIMFLFLQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IGL VD  I+V E +      +  S   +         S +    +      + + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMGEQGLSALDATRQSMDEITSALVGIALVLSAVFIPMA 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDI 525
           FFGG      R F++T+  ++++S+  A+++  A+   +           +       + 
Sbjct: 460 FFGGSTGVIYRQFSVTIVSAMVLSVLVAMTLTPALCATLLKPSDGQGHGAQRGFFGWFNR 519

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +     R R   +   ++  + +             + +G +   V  
Sbjct: 520 TFERAAEAYKRQVGGILQRGRVGWLVYGLVLLVMAAGYFSLPTSFLPDEDQGILMAQVQL 579

Query: 586 NRPVDLSVVRSNLES 600
                 S  ++ ++ 
Sbjct: 580 PVGATDSRTQAVVKQ 594



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 89/239 (37%), Gaps = 7/239 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L S      S  N        V+L            V   +K+          +
Sbjct: 264 DVARVELGSESYDVSSALNGKPAAAMGVQLAAGANALNVGEAVKAKLKELEPFYPTEMQL 323

Query: 652 QNTEIVGPKISREL-IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
           +N           L I + +  +  + + +++ +++  +     L    T+ + +  T G
Sbjct: 324 KNVIAYDTTPFVSLSIEEVVKSLGEAIVLVVLIMFLFLQNLRATLIPAITVPVVLLGTFG 383

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             ALFG   N   + A++  IG  V+D +VV + +     +    +S  D   +S++E  
Sbjct: 384 VLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERVMGEQGLSALDATRQSMDEIT 441

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              V  ++      +PMA +GGS       F++ +   +V++   ++ +   +   +  
Sbjct: 442 SALVGIALVLSAVFIPMAFFGGSTGVIYRQFSVTIVSAMVLSVLVAMTLTPALCATLLK 500



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 86/263 (32%), Gaps = 11/263 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +    +  V  S   S+  S     +   N +     +           
Sbjct: 778  RMQAADLEHWFVRNSNDEMVPFSSFASSSWSYGSPLLERYNGNASLEVVGDPAPGVSSGD 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  +VK+    I    T Q+ ++        L+    + V+   + +     +   
Sbjct: 838  AMDAVEALVKQLPEGIGYEWTGQSYQLRLSGSQAPLLYG--ISVLFVFLCLA---ALYES 892

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W      +  + L +   +    + G+  ++     +LT +G +  + +++ +  +    
Sbjct: 893  WSVPFSVMLVVPLGVVGAVLATRVSGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK---H 949

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
            L     S R+    ++ + L   + TS+A    VLP+A+    G +   +    +  G++
Sbjct: 950  LQEQGNSLREATLIAVRQRLRPILMTSLAFMFGVLPLALSSGAGSAGRQAIGTGVLGGML 1009

Query: 807  VAASSSIFIAAPILLFIYDWRAK 829
             A    IF      + I     +
Sbjct: 1010 SATVLGIFFVPLFFVQIRRRFGR 1032


>gi|289623894|ref|ZP_06456848.1| multidrug efflux transporter [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289648447|ref|ZP_06479790.1| multidrug efflux transporter [Pseudomonas syringae pv. aesculi str.
           2250]
          Length = 1048

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 69/519 (13%), Positives = 148/519 (28%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTV---------KISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASINLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVTGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVAWVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     + Q S   +         S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 498



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVAWVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 303 GEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 421 VMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 481 LLSVLVAMTLTPAL 494



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 85/265 (32%), Gaps = 11/265 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +    +  V  S    +  S     +   N +     +           
Sbjct: 778  RMQSADLNHWFVRNSNDEMVPFSSFARSSWSYGSPLLERYNGNSSLEVVGDPAPGVSSGT 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  ++K+    I    T Q+ ++        ++    + V+   + +     +   
Sbjct: 838  AMDAVETIIKQLPEGIGYEWTGQSYQLRLSGSQAPMLYA--ISVLFVFLCLA---ALYES 892

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W      +  + L +   +    + G+  ++     +LT +G +  + +++ +  +    
Sbjct: 893  WSVPFSVMLVVPLGVVGAVLATRISGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK---H 949

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIV 806
            L     S  +    +  + L   + TS+A    VLP+A+  G+           +  G+ 
Sbjct: 950  LQEQGKSLHEATLLAARQRLRPILMTSLAFMFGVLPLALSSGAGSAGRNAIGTGVLGGMF 1009

Query: 807  VAASSSIFIAAPILLFIYDWRAKNA 831
             A    IF+     + +    ++++
Sbjct: 1010 SATVLGIFLVPLFFVEVRRRFSRSS 1034


>gi|285018695|ref|YP_003376406.1| secf transmembrane protein [Xanthomonas albilineans GPE PC73]
 gi|283473913|emb|CBA16414.1| probable secf transmembrane protein [Xanthomonas albilineans]
          Length = 321

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 84/281 (29%), Positives = 156/281 (55%), Gaps = 4/281 (1%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    LIP+   I FMR R   + + ++ ++ S+ ++F  G NY ++F GG  +    
Sbjct: 1   MKIFPLHLIPNDTKIDFMRWRHPTLALMVVLALASLGVIFAKGFNYALEFTGGALVQTSF 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ--PGDSVAQTRVLEMVKKKIT 643
            + VD+  VR+ L      ++  QN       ++RLQ Q    +      + E V+K +T
Sbjct: 61  QKTVDVDQVRAQLAKAGFENVQVQNVGSGNQVVIRLQPQGEHNNEDITKNLAEQVRKAVT 120

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                +T+Q  E VGP++ ++L   G+   +   I  LIYI  RF+W FA+ A  T + D
Sbjct: 121 TPENPATVQPGEFVGPQVGKDLALNGVYATVFMLIGFLIYIAFRFEWKFAVVASMTALFD 180

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T+ + ++ G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   +++++
Sbjct: 181 LLVTVAYVSVTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSL--RVEPTEVLNR 238

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           SIN+TL R+V T++  F+S L + ++GG+ +   A+    G
Sbjct: 239 SINQTLSRTVITAVMFFLSALALYLYGGASMQGLALTHMIG 279


>gi|256059440|ref|ZP_05449642.1| hydrophobe/amphiphile efflux-1 family protein [Brucella neotomae
           5K33]
 gi|261323410|ref|ZP_05962607.1| hydrophobe/amphiphile efflux-1 family protein [Brucella neotomae
           5K33]
 gi|261299390|gb|EEY02887.1| hydrophobe/amphiphile efflux-1 family protein [Brucella neotomae
           5K33]
          Length = 1074

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLAHV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLTLTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|330868305|gb|EGH03014.1| multidrug efflux transporter [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 932

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 69/519 (13%), Positives = 148/519 (28%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTV---------KISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASINLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVTGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVAWVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     + Q S   +         S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 498



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVAWVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 303 GEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 421 VMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 481 LLSVLVAMTLTPAL 494


>gi|323529605|ref|YP_004231757.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Burkholderia sp. CCGE1001]
 gi|323386607|gb|ADX58697.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1001]
          Length = 1046

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 71/677 (10%), Positives = 186/677 (27%), Gaps = 41/677 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G +  +        + ++P   P               + +    
Sbjct: 8   RPVFANVIALIVMLLGAVALI-----NLPVAQYPPITPPT-------------VQVVAHF 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +    +  + + +           +        +T++FA     +     V  
Sbjct: 50  PGASAATVIDRVALPIETQVNGVENALYMQSTSTNDGTYTLTVTFAVGTDVDKAQVLVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L    ++  +         + L           ++  S   +    D +   
Sbjct: 110 RVSAATAQLPQAVQQQGVTVRKRSTAILQLYTLQSPDPKYDSLFLSNYAVIYLRDTLARL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +   T A +       +        G        
Sbjct: 170 PGVGDVTVFGTGQYSMRVWLDPQKLSERNLTAADVMQAIQSQSKDVSAGQLGSEPNAGGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V               A    +    ++  +    G R        +     +  
Sbjct: 230 AFQLTV-----------TMHGALSTAREFDDIIVKADSNDGGRFVRIRDVGHTELGSSSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +            A L           +          
Sbjct: 279 GQFFNLDGKPAAGIAIYQLPEANALEVGNAVKATMARLAKDMPKGVSYQLPFDTTIFVRQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T    A LVL V+ + +   +  LV   +I + +I T   + ++G ++ L ++
Sbjct: 339 SVIDVYKTLFEAALLVLAVILLFLQNWRAMLVPATTIPVTIIGTFGAIYMMGFSINLLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             IVL IG+ VD  I+V E I +   + ++   +           I    +  +   +  
Sbjct: 399 FAIVLAIGIVVDDAIVVVEGITQHIEQGKTPKQAAIDAMHELLGPIVGITLVLVSVFLPS 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLSR 530
            F G   G   R FA+ +  + +IS   A+++     +  +R+++  +      +   + 
Sbjct: 459 AFLGGVTGQMYRQFALVVVATTVISAINAVTLKPVQSVRWLRHQRPGTPNVVYRVFDRAY 518

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +    + +         + + I   +          +             ++A +  D
Sbjct: 519 ARVEKGYVGVVSWFVARCKLALVIALLLGGASAYLLTRVPTSFIPLEDQGYMLIAAQIAD 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +    E+    +       G  + +      P D+ A      ++   + +      
Sbjct: 579 AASLGRTREASTEIEKRIGAIPGVSHVVSIGGISPLDNNASLANAALIYVTLDDWSERGK 638

Query: 651 IQNTEIVGPKISRELIR 667
            ++   +  +++ EL +
Sbjct: 639 GKDLRSLYQRMNSELAK 655



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 80/267 (29%), Gaps = 12/267 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 D    +Q+   +   V+L        ++     +  N                  
Sbjct: 777  FRRDTDDIRRLQIRSNSGHMVELGTFIDAHTNVGPAVAALYNLAPAAAVNGNPASGYSTG 836

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A     E   + +   V                + +         +  + +   +  ++
Sbjct: 837  DAIRAFEEEAARILPAGVGY-----EWTAMSYQEKLVGNSAYWVFAVGVLLVFCVLAAQY 891

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +  + L +  T G  AL G   NL     ++ LI  S  + +++ +  R  
Sbjct: 892  ESWLLPAAVVLAVPLALLGTAGTLALLGTANNLYTQIGLVLLIALSAKNAILIVEFAR-- 949

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
              L    +   +   ++        + TS A  + V+P+ +  G+      S  I +  G
Sbjct: 950  -HLRLQGVGMTEAAIEAARLRFRPIMMTSFAFILGVVPLVIATGASASARRSLGIAVFSG 1008

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++ +   ++       + +     ++A
Sbjct: 1009 MLASTCIAVLFIPSFYVLLQRMAERHA 1035


>gi|190570897|ref|YP_001975255.1| protein-export membrane protein SecD [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|190357169|emb|CAQ54584.1| protein-export membrane protein SecD [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
          Length = 504

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 180/509 (35%), Positives = 292/509 (57%), Gaps = 23/509 (4%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             +   +I  + L I LPNF+             K RI+LGLDL+GGS L+L VD D + 
Sbjct: 8   KSLSVLLIFLLSLYIILPNFIDNKF------FTSKKRINLGLDLKGGSSLLLNVDLDFYF 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              L M +DE++  L  + I      +   ++ ++  +    + ++  +           
Sbjct: 62  KEKLSMLTDEIKEGLLTQKIEFS--AKNDKQVVVTLNNIDDYKKVSTLIHK--------- 110

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                 NL ++     I I    +  + +I+  + +S+  +++R+D++G  E ++Q+ G 
Sbjct: 111 ---INPNLELSRKNTAIFISYKPHYKNSLINEVVSESIVNVQRRLDKLGTKEVSVQKQGQ 167

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN--NSKKGFMFGVRFLRDSDGNQYLVE 244
           ++IL+Q+PG +D  +++ LLG TAK++FH    N    +         L+DS GN Y + 
Sbjct: 168 NKILVQVPGVEDTQQIKSLLGKTAKLAFHLANTNVAKMQDIDHDTTIMLKDSLGNSYPIF 227

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            K EI G  L  A+  F      P V   FD + +++F ++T++N+GKP A+VLD  VLT
Sbjct: 228 RKTEIGGDSLVNASVRFGNLGK-PTVHFKFDSIASKKFAKITKENVGKPFAIVLDNTVLT 286

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
            P I + I +G+ +ISGNFT + A  LA +L++G+LP  L I+EE+N+G  LG +SI  G
Sbjct: 287 VPTIREPILNGEGEISGNFTEKQASELAILLKSGALPAPLKIIEEKNIGPSLGEESIKAG 346

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             A +  ++ + L +I+ YGK GL+A  ++  NVI  L +L+LL ATLTLP IAGI L +
Sbjct: 347 EIAAIISIIAVGLSIIITYGKLGLLASVALVFNVISILLILTLLEATLTLPGIAGIALTV 406

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G++VD+N+L+ ERIREE R  +    +++ GF  A  TI DSN+T LIA+ ++F  G GA
Sbjct: 407 GMSVDANVLIFERIREEIRAGKRTARAIEEGFKNAIKTILDSNLTTLIASGIMFIIGSGA 466

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIF 513
           +RGF+IT+ + +L SMF+AI + + ++  
Sbjct: 467 IRGFSITLSIGVLCSMFSAIIVTKLLIEL 495



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 78/166 (46%), Gaps = 5/166 (3%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  E I+ G +  IIS IA+ + I I +     L A   L+ ++   L    L    
Sbjct: 335 GPSLGEESIKAGEIAAIISIIAVGLSIIITYG-KLGLLASVALVFNVISILLILTLLEAT 393

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A +   +G SV+  V++++R+R+ ++    +      I++     +   + +++
Sbjct: 394 LTLPGIAGIALTVGMSVDANVLIFERIREEIRAGKRTA---RAIEEGFKNAIKTILDSNL 450

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              I+   M + G   I  F+I ++ G++ +  S+I I   +L+ +
Sbjct: 451 TTLIASGIMFIIGSGAIRGFSITLSIGVLCSMFSAI-IVTKLLIEL 495


>gi|3328118|gb|AAC27754.1| putative transporter AmrB [Burkholderia pseudomallei 1026b]
          Length = 1043

 Score =  174 bits (440), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 73/622 (11%), Positives = 171/622 (27%), Gaps = 41/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+            + ++P   P   +SL        +       
Sbjct: 8   RPVFAWVISLFIMLGGIFAI-----RALPVAQYPDIAPP-VVSL--------YATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +        +    Q  ++L+F      +  A  V   L+ V
Sbjct: 54  AQVVEESVTAVIEREMNGVPGLLYTSATSSAGQASLSLTFKQGVSADLAAVDVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      + + ++     +      +E         +  +   E   +
Sbjct: 114 EARLPEPVRRDGISIEKAADNAQIIVSLTSEDGRISGVELGEYASANVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKMAALGLTASDIASAVRAHNARVTIGDVGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     ++                                +      I            
Sbjct: 233 VLADAPLT-------------TPDAFGAIALRARADGSTLYLRDVARIEFGGNDYNYPSF 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L     P     +          S S  
Sbjct: 280 VNGKTATGMGIKLAPGSNAVATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+F+ +   +  L+    + + ++ T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLVEAGVLVFAVMFLFMQNFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529
              G   R FA  + +SI  S F A+S+  A+   +++                +     
Sbjct: 460 GAVGNIYRQFAFALAVSIGFSAFLALSLTPALCATLLKPVADDHHEKDGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R   W V    L +  ++ +          + +G   + V+  +  
Sbjct: 520 STHRYTRRVGRVLERPLRWLVVYGALTAAAALLITKLPAAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIGDISFQNF 611
            L+    ++  ++    +    
Sbjct: 580 PLAETMQSVRRVEEYVRTHSPS 601



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 71/203 (34%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    +E + K     V       T         +++   +   ++    M +++ 
Sbjct: 300 ATEKRVRATMEELAKFFPPGVKYQIPYETASFVRVSMSKVVTTLVEAGVLVFAVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NFRATLIPTLVVPVALLGTFGAMLAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +   +   K++ +  G  V  ++      +PMA +GG+V      FA  +A
Sbjct: 416 -ERLMVEEKLPPYEATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFAFALA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 67/195 (34%), Gaps = 9/195 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFA 693
                 I  I              +   E +      ++ +   +++++ +      W   
Sbjct: 833  EAMAAIERIASTLPAGTGYAWSGQSYEERLSGAQAPMLFALSVLVVFLALAALYESWSIP 892

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + L +   +    L G+  ++     ++  IG S  + +++ +  +    L   
Sbjct: 893  FAVMLVVPLGVIGAVAGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKD---LVAQ 949

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAAS 810
             +S  D   ++    L   V TS+A  + VLP+    G +     AI      G++ A  
Sbjct: 950  RMSLADAALEAARLRLRPIVMTSLAFGVGVLPLAFATGAASGAQIAIGTGVLGGVISATL 1009

Query: 811  SSIFIAAPILLFIYD 825
             +IF+     + +  
Sbjct: 1010 FAIFLVPLFFVCVGR 1024


>gi|238021947|ref|ZP_04602373.1| hypothetical protein GCWU000324_01852 [Kingella oralis ATCC 51147]
 gi|237866561|gb|EEP67603.1| hypothetical protein GCWU000324_01852 [Kingella oralis ATCC 51147]
          Length = 1063

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 81/690 (11%), Positives = 192/690 (27%), Gaps = 53/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++      +    + ++PS                 ++ L    
Sbjct: 8   RPIFAWVIAIFIMIAGVI-----GIQNLPISQYPSVAAP-------------NITLTATY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                  ++     +       ++       S     +  +TL+F     ++     V  
Sbjct: 50  PGASAKVMEDSVLAVIERNMYGVEGLDYMTTSADSSGRGSVTLTFTPETNEDLAQMNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V + L    ++N +  +  +   +++   N D     + E +    R  + ++   
Sbjct: 110 KLSEVTALLPSTVQQNGITVSKARSNFLMVVFLNSD--TKSSEEMADYAQRNVVPELQRI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L+    + A ++      N        G        
Sbjct: 168 DGVGNVRLFGAQR-AMRVWVDPAKLKNYNISFADVTAAISAQNAQLSVGALGDLPSSQGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + +                  +    +   ++     +      IG      
Sbjct: 227 QITATISAEGQ-------------MKTAEEFGNILLRSDINGANVYLKDVAEIGLGSQSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          S     +              L+                     
Sbjct: 274 NASSFLNGKKAAGMAVSLSNTGNALAAATAIKAKMNELQNFFPQGVTWSAPYDTSTFVSL 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV IV+F+ +   ++ L+    + ++++   A +S LG ++ + ++
Sbjct: 334 SIEKVIHTLAEAIVLVFIVMFIFLQNFRYTLIPTIVVPISLLGAFAAISYLGMSINVMTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSR---AYSTIFDSNITALIA 473
             +VL IG+ VD  I+V E +      +  S   +      +   A   I    ++  + 
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMAEEGLSPKQATKKAMGQISGAVVGITAVLVSVFVP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
             +L    G   R F++TM  +I  S F A+++  A+   +           +       
Sbjct: 454 LSLLSGAAGNIYRQFSLTMVFAIGFSAFLALTLTPALCATMLKPIPKGHNHTKKGFFGWF 513

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    +        I     +A    V    L +   + +          + +G I   V
Sbjct: 514 NRVFNAGTRTYSGWIGKTLRKAGVMFVIYLALGAGAFVLISRLPSSFIPSEDQGFIMTTV 573

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         L +L     S                  G ++    ++     + T
Sbjct: 574 QLPSGATAERTEKTLSTLNQVAHSMPEVQDVITVSGFSFTGSGQNMGMGFIMLKDWSERT 633

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +    +T    +I G  +S  +     + +
Sbjct: 634 QAGSDATSVAGKITGAMMSGAIQDGFALAL 663



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 6/236 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       Q  + S      +   +       G+++A    ++    ++    P
Sbjct: 257 NVYLKDVAEIGLGSQSYNASSFLNGKKAAGMAVSLSNTGNALAAATAIKAKMNELQNFFP 316

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                +            I K I  +  + + + I ++I  + + + L     + + +  
Sbjct: 317 QGVTWSAPYDTSTFVSLSIEKVIHTLAEAIVLVFIVMFIFLQNFRYTLIPTIVVPISLLG 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                +  G+  N+  + A++ +IG  V+D +VV + +     +    +S +    K++ 
Sbjct: 377 AFAAISYLGMSINVMTMFAMVLVIGIVVDDAIVVVENV--ERIMAEEGLSPKQATKKAMG 434

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +  G  V  +       +P+++  G+   +   F++ M F I  +A  ++ +   +
Sbjct: 435 QISGAVVGITAVLVSVFVPLSLLSGAAGNIYRQFSLTMVFAIGFSAFLALTLTPAL 490



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 57/138 (41%), Gaps = 8/138 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               F++  +  L + +   LG   +     ++     ++T++G S  + +++ +  +   
Sbjct: 895  SIPFSVLLVVPLGI-LGVALGA-KIRNYSNDVYFTVGMITVMGLSAKNAILIIEFAKD-- 950

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGI 805
             L+ +  S  +   ++        + TS A  + V+PM +  G+      +    + +G+
Sbjct: 951  -LHESGKSVAESALRAAKLRFRPILMTSFAFILGVVPMYIATGASSASQRAIGTAVFWGM 1009

Query: 806  VVAASSSIFIAAPILLFI 823
            +V    S+F+     + +
Sbjct: 1010 LVGTFLSVFLVPMFYIIV 1027


>gi|168701202|ref|ZP_02733479.1| Cation/multidrug efflux pump [Gemmata obscuriglobus UQM 2246]
          Length = 1119

 Score =  174 bits (439), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 65/552 (11%), Positives = 157/552 (28%), Gaps = 39/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +  +        + ++P   P              ++ +    
Sbjct: 9   RPVFATVLSLVVTLAGGVALV-----NLPMTQYPPITPP-------------NITVVASY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +   E +   S     +    +T++F      +     V  
Sbjct: 51  PGASAQVVADAVAAPIEQEVNGVENMMYMSSNSANDGSYSLTVTFKPGTNLDFAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L    ++  + T       +++            +  S        +++   
Sbjct: 111 RVNLALPLLPDVVRQAGVTTRKRNPDMLMVINLYSPTGEYDQLHLSNYSSIYVREELARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +          +   +    DP RL  +  T   +       N        G   + D  
Sbjct: 171 KGVGDVGLFGSLDYSMRVWVDPDRLASMGITAGDVLAAIREQNQPFAAGQVGQSPVPDGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             ++ +  +   S                +    +       R+        +      V
Sbjct: 231 TFEFPLHVRGRQSA-------------PEEFADIVIRRAPDGRQVRIKDVGRVELGAKSV 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +     +        L+    P     +   +      
Sbjct: 278 DTSDKLDGRPTANIGVFQLSDANALDVADRVRAKMEELKEAFPPGIDYTIANDSTPFIRE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV +V+ + +   +  LV   ++ + ++ T A ++ LG TL   ++
Sbjct: 338 SVRGVVTTLLEAIGLVAVVVLLFLQSWRAALVPLAAVPVAIVGTFAAMAALGFTLNTLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E ++ +    Q+   +     +     +  + +  +   V  
Sbjct: 398 FGLVLAIGIVVDDAIVVVEAVQHKIEHGQAPREATRQAMAEVSGPVVATGLVLVAVFVPC 457

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F GG      R FA+T+ +S  +S   ++++  AM   +++    +      +  F   
Sbjct: 458 AFLGGITGLFFRQFAVTIAVSTALSALNSLTLSPAMCAILLQPAGARKDIPARVIDFLFG 517

Query: 535 PDCIAIQFMRAR 546
                      R
Sbjct: 518 WFFRLFNTGVVR 529



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 69/189 (36%), Gaps = 9/189 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                  S     V++ +  ++              +     + +  K I  +  + + + 
Sbjct: 838  TAPGVSSGDGITVIDRLASRVFPEGTAHEWTEINYIQIDAGKNVWNKLIFPL--AVLFVF 895

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +  +++ W   L  I  + L +  +L    + G + N+      + LIG +  + V++
Sbjct: 896  LVLAAQYESWALPLAVIPIVPLCVLSSLAGVVVAGSDINVFTQIGFVVLIGLACKNAVLI 955

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +  R    L     S R  + ++    L   V TS+A  + V+P+      G  +  + 
Sbjct: 956  VEFAR---ALRAAGNSPRTAVVEACRLRLRPIVMTSVAFILGVVPLVFATGSGAEMRRAL 1012

Query: 798  AIPMAFGIV 806
               +  G++
Sbjct: 1013 GTAVFAGMI 1021



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 10/140 (7%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  AL  +  + + I  T    A  G   N   +  ++  IG  V+D +VV + +    
Sbjct: 363 SWRAALVPLAAVPVAIVGTFAAMAALGFTLNTLTLFGLVLAIGIVVDDAIVVVEAV---Q 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAVWGGSV---IGSFAIPMAF 803
                  + R+   +++ E  G  V T +   A          GG        FA+ +A 
Sbjct: 420 HKIEHGQAPREATRQAMAEVSGPVVATGLVLVAVFVPCA--FLGGITGLFFRQFAVTIAV 477

Query: 804 GIVVAASSSIFIAAPILLFI 823
              ++A +S+ ++  +   +
Sbjct: 478 STALSALNSLTLSPAMCAIL 497


>gi|269968471|ref|ZP_06182483.1| Preprotein translocase subunit SecF [Vibrio alginolyticus 40B]
 gi|269826924|gb|EEZ81246.1| Preprotein translocase subunit SecF [Vibrio alginolyticus 40B]
          Length = 276

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 71/267 (26%), Positives = 135/267 (50%), Gaps = 6/267 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           + +I  L   GLN G+DF GG+   V  ++ +    +   L+       S      +  +
Sbjct: 1   MIAIVALGFKGLNLGLDFTGGMVTEVKVDKQLTNHDLLDVLQPKLGESASVTRSGEDGRW 60

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R           +     V++ +  I     + +  IVG ++ ++L  +G + ++I  
Sbjct: 61  VIRYSAPEDGQTLPS-----VEEVLKPISHQVDVVSNSIVGAQVGQDLFEQGGLALLICV 115

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           +++L Y+  RF+W  A G++  L  D+   LGFFA+  +EFNLT  AAVL ++GYS+ND 
Sbjct: 116 LSILGYLCFRFEWRLASGSLFALAHDVILVLGFFAITQMEFNLTVFAAVLAILGYSLNDS 175

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +++ DR+R+ + +   S    D+ D+++  T  R++ TS    I+V  + + GG+ +  F
Sbjct: 176 IIIADRIRE-LLIAKQSWKTEDINDQAVIATFSRTMVTSGTTLITVGALWIMGGAPLAGF 234

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIY 824
           +  M  G++    SSI I   +  ++ 
Sbjct: 235 STAMFIGVLSGTWSSISIGTVLPEWLK 261


>gi|254491650|ref|ZP_05104829.1| RND transporter, HAE1 family [Methylophaga thiooxidans DMS010]
 gi|224463128|gb|EEF79398.1| RND transporter, HAE1 family [Methylophaga thiooxydans DMS010]
          Length = 1052

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 152/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL           +  +P   P + +          +       
Sbjct: 10  RPIFAGVISLLIFIAGLLSMF-----NLPISEYPEVAPPSVV---------VNASFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  S ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVARPLEEQLSGVENMLYMFSQATSDGRMTLTVTFKIGTDPDLAQQMVQNRVTQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  +          ++            +      +    D++   E   
Sbjct: 116 ATPRLPEVTRQLGVTVVKSSPDLTMVVHLISPDDSYDELYLRNYALMHVKDELAKVEGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P ++ +   T   +       N      + G   + +    Q 
Sbjct: 176 NVRLFGSGDYAMRIWLNPEKIAERGLTATDVVAAIREQNVQVAAGVIGGAPMTNPVDVQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    I       +         +    A      
Sbjct: 236 PINAKGRL-------------ESPEEFENIIIRAGEQGQITRLKDVARVELEAAEHSLNS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L+          V          S + 
Sbjct: 283 MLNNQPAVAIPIFQSPGANAISISDNVRASMAELQQRFPKGVDYEVVYDPTVFVKESINA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  L+   ++ +++I T AL+ + G ++   S+ G+V
Sbjct: 343 VIKTLLEALALVVIVVVVFLQTWRASLIPLLAVPVSIIGTFALMHVFGFSINTLSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I   ++T +   V + F  
Sbjct: 403 LSIGIVVDDAIVVVENVERNIESGLSPLEASYQAMREVSGPIIAISLTLVAVFVPIAFVS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   ++R        +  +  F       
Sbjct: 463 GLTGQFYQQFALTIAISTVISAINSLTLSPALSALLLRSHDAPKDRLTKVIDFLFGWFFK 522

Query: 539 AIQFMRAR 546
                  +
Sbjct: 523 LFNKTFKK 530



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 82/189 (43%), Gaps = 9/189 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      +  ++++  + V    + +  +   +    +I+  +  + +  I +++++   
Sbjct: 306 SDNVRASMAELQQRFPKGVDYEVVYDPTVFVKESINAVIKTLLEALALVVIVVVVFLQ-- 363

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  +L  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N
Sbjct: 364 -TWRASLIPLLAVPVSIIGTFALMHVFGFSINTLSLFGLVLSIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           +    + +S  +   +++ E  G  +  S+      +P+A      G     FA+ +A  
Sbjct: 423 I---ESGLSPLEASYQAMREVSGPIIAISLTLVAVFVPIAFVSGLTGQFYQQFALTIAIS 479

Query: 805 IVVAASSSI 813
            V++A +S+
Sbjct: 480 TVISAINSL 488



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  IT + L I   +    +   + N+    +   L G +  + +++ +  R+  
Sbjct: 902  SLILPLVVITIVPLSILAAVFGVWVTNGDSNIFTQISFFVLAGLASKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L    +       K+    L   + TS A  + V+PM +    G  +     I +  G+
Sbjct: 960  -LEMNGMETVKAAIKASRMRLRPILMTSFAFIMGVVPMVLSTGAGSEMRNDIGITVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      +F      + +     +  
Sbjct: 1019 LGVTFFGLFFTPIFYVLLRKLEGRRR 1044


>gi|45658379|ref|YP_002465.1| preprotein translocase subunit SecF [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|45601622|gb|AAS71102.1| SecF [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
          Length = 322

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 87/318 (27%), Positives = 150/318 (47%), Gaps = 21/318 (6%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG--LNYGIDFKGGIQLGVLANRPVD- 590
                   F++ ++  + IS+   +      +         +DF GG++  V  ++ +D 
Sbjct: 6   WSPKRMFDFIKYKYVSICISLALIVFGFSYTYAVHGGFANSLDFNGGLRTVVEFDQNMDR 65

Query: 591 -----------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                      +  V   L+  +             + L++ + + G        L  + 
Sbjct: 66  KKLENYFAENKIEAVLLLLDKEKHHYQIDIGLGSVDSILLKYREKNGLKPTDKVELSGID 125

Query: 640 KKITEIVPLSTIQ-----NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
             I+ ++    I      +   VG  +  EL   G   + ++   +L YI  RF++ FAL
Sbjct: 126 ALISILIADFRIDKSNILSANQVGAIVGGELSSTGTTLLGLTMAIILAYISFRFQFKFAL 185

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
           GAI  L  D+  T+ F   F I+ ++  +AA+LTL+GYS+ND +VV+DR+R+N       
Sbjct: 186 GAILALTHDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSAGNLN- 244

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            +F   I+ +IN+TLGR+  TS A  IS++ + + G + +  FA  + FGIV+   SSIF
Sbjct: 245 QTFGQTINSAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYVLTFGIVIGTYSSIF 304

Query: 815 IAAPILLFIYDWRAKNAR 832
           IAAP+ + IYD   + AR
Sbjct: 305 IAAPL-VDIYDQVIRKAR 321


>gi|253571751|ref|ZP_04849157.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838959|gb|EES67044.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 1037

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 94/694 (13%), Positives = 209/694 (30%), Gaps = 48/694 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++           ++++P   P   I+                 
Sbjct: 9   RPVFSGVISVVIVLLGMISMF-----SLPVEQYPDIAPPT-IN--------VFATYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +E  + ++       +        I + F      +  A  V   + G
Sbjct: 55  AETVQKAVITPLEEAINGVEDMTYMTSTASNTGDASINIYFKQGTNADMAAVNVQNRVNG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +  K  + T  ++   ++                +  +      ++       
Sbjct: 115 ALSQLPAEATKTGVTTEKQQNAELMTFALYSPDDRFDQTFLNNYVKINVEPRLKRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P ++ Q       +S      N       FG         N+Y
Sbjct: 175 KAQLFGS-NYSMRLWLRPDKMAQYGLIPDDISAVLARQNIEAATGSFGANHPT---ANEY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +SG               +    +     G          ++           
Sbjct: 231 TMKYRGRLSGAE-------------EFGELVVKSLPGGNVLRLKEVADVELGDEYYNYSS 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        + + KA  + + TI+    +   L          +V          S   
Sbjct: 278 EVNGHPAAMMLINQKAGSNASSTIKEIHDVLDDLSRDLPEGTEFVVLTDTNKFLYASIHS 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   K  L+   SIF+++I T A++S++G ++ L ++  +V
Sbjct: 338 VLRTLLEAILLVIVVVYVFLQDIKSTLIPTISIFVSIIGTFAVMSMIGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++ +  +   S   + D       S I  S I  +     +   
Sbjct: 398 LAIGTVVDDAIVVVEAVQAKFDEGYQSAVLAADDAMKGVSSAILTSTIIFMAVFFPVAMM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------------IRYKKMKSIDI 525
           GG +      F ITM +++ IS   A ++  A+   +              +        
Sbjct: 458 GGTSGAFYTQFGITMAVAVGISAVNAFTLSPALCALLLKPYIDEQGNTKNNFAARFRKAF 517

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           N +           + F+  R W +   I  S   + LL        I  +    + V  
Sbjct: 518 NAVFDSLSRRYVRGVMFIIHRRWLLWSIIGISFGLLVLLVNVTKTGLIPEEDTGTVMVSM 577

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           N     S+ +++    +I        + E +  V      G   +Q      +K      
Sbjct: 578 NTKPGTSMAQTSKVMERINSRLDSIGEIEYSGAVAGFSFSGSGPSQAMYFVTLKDWEDRK 637

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
               ++ +        + ++    +  +    IA
Sbjct: 638 GEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIA 671



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ + I  T    ++ G   NL  + A++  IG  V+D +VV + ++   
Sbjct: 359 DIKSTLIPTISIFVSIIGTFAVMSMIGFSINLLTLFALVLAIGTVVDDAIVVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                S       D ++       + +++       P+A+ GG+       F I MA  +
Sbjct: 419 DEGYQSAVL--AADDAMKGVSSAILTSTIIFMAVFFPVAMMGGTSGAFYTQFGITMAVAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A ++  ++  +   +  
Sbjct: 477 GISAVNAFTLSPALCALLLK 496



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/418 (9%), Positives = 116/418 (27%), Gaps = 21/418 (5%)

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +  +     ++    +    S++    + Y+   D     + A       G G   GF +
Sbjct: 622  SQAMYFVTLKDWEDRKGEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIAGYGMGNGFEL 681

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +      ++          +  + +  ++  +  +  + +      I            
Sbjct: 682  YLQDKAGGNIAAFKEEADKFVEALSQRPEIGEVYSSFATDYPQYWVDIDAAKCEQSGVSP 741

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF-- 608
               +          +    N        + +   A   V+   +         G +S   
Sbjct: 742  ADVLSTLSGYYTGQYVSDFNR-FSKLYHVTMQAPAEYRVNAESLHHMYVRASDGGMSPLS 800

Query: 609  -----QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                    +G  +      +                + +  I   +          +   
Sbjct: 801  RFVRLTKTNGPSDLTRFNLFNAISISGSPAQGYSSGQVLEAIGETAREVLPSNYTYEFGG 860

Query: 664  ELIRKGIV---GVIISAIAM----LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                +        +I  + M    LI   +    +     + ++   +  +  F  LFG+
Sbjct: 861  ISREESKTTNNATLIFLLCMVLVYLILCALYESVFIPFAVLLSVPCGLMGSFLFAWLFGL 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            E N+     ++ +IG      +++ +      K  +  ++       +    L   + T 
Sbjct: 921  ENNIYMQTGLIMIIGLLAKTAILLTE---YAGKRRSEGMTLAQAAYSAAKVRLRPILMTV 977

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++    ++P+ +    G +   S A  +  G++V   + +F+   + +     + +  
Sbjct: 978  LSMVFGLVPLMMAHGVGANGSRSLATGVIGGMIVGTLALLFLVPSLFIVFQYIQERVK 1035


>gi|320328507|gb|EFW84509.1| multidrug efflux transporter [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 1048

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 69/519 (13%), Positives = 148/519 (28%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTV---------KISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASINLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVAFASDNESVTGTQIGDYISSTLLDQLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVTGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     + Q S   +         S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 498



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 303 GEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 421 VMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 481 LLSVLVAMTLTPAL 494



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 89/266 (33%), Gaps = 13/266 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +    +  V  S    +  S     +   N +     +           
Sbjct: 778  RMQSADLNHWFVRNSNDEMVPFSSFARSSWSYGSPLLERYNGNSSLEVVGDPAPGVSSGT 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  ++K+    I    T Q+ ++        ++        +S + + + +   ++
Sbjct: 838  AMDAVEAIIKQLPEGIGYEWTGQSYQLRLSGSQAPMLY------AVSVLFVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L +   +    L G+  ++     +LT +G +  + +++ +  +   
Sbjct: 892  SWSVPFSVMLVVPLGVVGAVLATRLSGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK--- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S RD    +  + L   + TS+A    VLP+A+    G +   +    +  G+
Sbjct: 949  HLQEQGKSLRDATLIAARQRLRPILMTSLAFMFGVLPLALSTGAGSAGRNAIGTGVLGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A    IF+     + +    +++A
Sbjct: 1009 FSATVLGIFLVPLFFVEVRRRFSRSA 1034


>gi|194365571|ref|YP_002028181.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Stenotrophomonas maltophilia R551-3]
 gi|194348375|gb|ACF51498.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Stenotrophomonas maltophilia R551-3]
          Length = 1049

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 73/589 (12%), Positives = 150/589 (25%), Gaps = 41/589 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G+L       P+  ++R+P+  P               + +    
Sbjct: 8   RPVFAWVLAIFIILAGVLAI-----PRLAVERYPAVAPP-------------SVSIYASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L       +   L                 +  IT +F      E     V  
Sbjct: 50  PGASPQTLNDAVVGLIERELSSVKHLLYFESSVDTSGEASITATFKPGTNPELAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ +  +L    ++N L         ++L                  + R  I+++   
Sbjct: 110 RIKAIEPRLPRSVRQNGLFVEAADSGFLMLVGLRSPDASVSEAALGDFMARNIIEELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP+RL     T   ++      N        G        
Sbjct: 170 DGVGRVQLFGA-EQAMRVWLDPTRLTGYGLTMGDVASAIEQQNLEISPGRIGDSPGVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    ++S                +    +        R        I       
Sbjct: 229 RITVPLSADGQLS-------------TPEQFAAIVLRAGADGSRVLLGDVARIELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G          A    +   +   T        A L         + +          
Sbjct: 276 AWGTREDGHPATAAGVQLRPGANAVRTASAVRERMAELAPLLPRGVQSSIPFDTAPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  ++++ +   ++ L+      + ++ T A++  LG ++ + ++
Sbjct: 336 SIQKVVQTLLEAMLLVFAMMYLFLQNWRYTLIPALVAPIALLGTFAVMLALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVEGVERIMAEEGLPPREATIKAMRELTGAVIGITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +    G      R F + M +SIL S   A+S+  A+   ++R           L   F 
Sbjct: 456 MALASGSVGAIYRQFTVAMAVSILFSALLALSLTPALCATLLRPNTHGHHGRGGLFGAFN 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                     +     V       +     L    L       G     
Sbjct: 516 RGFEKMTGRYQRGVASVLQRSGRVMGVFAALVVALLLGLHWLPGAFLPE 564



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 6/223 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q      +                 ++V     +     ++  ++
Sbjct: 258 SRVLLGDVARIELGAQSYAWGTREDGHPATAAGVQLRPGANAVRTASAVRERMAELAPLL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I+K +  ++ + + +   +++  + W + L       + + 
Sbjct: 318 PRGVQSSIPFDTAPFVKISIQKVVQTLLEAMLLVFAMMYLFLQNWRYTLIPALVAPIALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++  IG  V+D +VV + +     +    +  R+   K++
Sbjct: 378 GTFAVMLALGFSINVLTMFGMVLAIGIIVDDAIVVVEGV--ERIMAEEGLPPREATIKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            E  G  +  ++      +PMA+  GSV      F + MA  I
Sbjct: 436 RELTGAVIGITLVLTAVFIPMALASGSVGAIYRQFTVAMAVSI 478



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 62/150 (41%), Gaps = 5/150 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +    +++S + + + +   ++ W   L  +  + L +   +    L G+  ++     +
Sbjct: 865  QAPWLLLLSMLVVFLVLAALYESWSIPLAVMLVVPLGLLGAVAAVLLRGMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  R   +L        +   ++    L   V TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAR---QLQQQGRGLVEAALEAARLRLRPIVMTSLAFALGVVPL 981

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +  G+        +  G+     S+  +A
Sbjct: 982  MLAQGAS-KETQQAIGTGVFGGMVSATVLA 1010


>gi|254711570|ref|ZP_05173381.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis B2/94]
 gi|256029794|ref|ZP_05443408.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis M292/94/1]
 gi|256157965|ref|ZP_05455883.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M490/95/1]
 gi|256253076|ref|ZP_05458612.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti B1/94]
 gi|260167100|ref|ZP_05753911.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. F5/99]
 gi|261220175|ref|ZP_05934456.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti B1/94]
 gi|261319189|ref|ZP_05958386.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis B2/94]
 gi|261756495|ref|ZP_06000204.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. F5/99]
 gi|265986808|ref|ZP_06099365.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis M292/94/1]
 gi|265996478|ref|ZP_06109035.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M490/95/1]
 gi|260918759|gb|EEX85412.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti B1/94]
 gi|261298412|gb|EEY01909.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis B2/94]
 gi|261736479|gb|EEY24475.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. F5/99]
 gi|262550775|gb|EEZ06936.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ceti
           M490/95/1]
 gi|264659005|gb|EEZ29266.1| hydrophobe/amphiphile efflux-1 family protein [Brucella
           pinnipedialis M292/94/1]
          Length = 1074

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 60/547 (10%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLTLTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     +    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAKGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|315931555|gb|EFV10521.1| putative aminoglycoside efflux pump [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 1040

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 78/683 (11%), Positives = 184/683 (26%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGVIS-----LTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNDDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  +V
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  + +          F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 537 CIAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    ++  R     +     + +I  L     N  +  +    + +        S
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLNKAVPNSLVPEEDQGLM-ISIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
                  K          V + +
Sbjct: 641 QIIAELNKKFAFDRNASSVFIGL 663



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALVLAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|283955160|ref|ZP_06372662.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283793373|gb|EFC32140.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 1039

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/645 (11%), Positives = 184/645 (28%), Gaps = 32/645 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +++ +  I + IA    L    ++++PS  P                     +   +   
Sbjct: 11  IFASVVAIIISIAGAIGLVNLPVEQYPSLTPPTVQ---------VSATYTGADAQTIAST 61

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    ++  + +        +    Q K+T+ F      +     V   +    +KL   
Sbjct: 62  VASPIEDAINGVDNMIYMDSTSSPGQMKLTVYFNIGTNPDQATVDVNNRISAATAKLPEA 121

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +         + +     +    + I+         +D++               
Sbjct: 122 VKKLGVTVRKSSSTILEVVSIYSEDGSMNDIDIYNYTSLNILDELKRIPGVGNASAIGNK 181

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +     P  L +   T   +       N        G   + +       +  +  +
Sbjct: 182 NYSMRIWLKPDLLNKFGVTANDVISAINEQNAQYATGKIGEEPVVNKSPQVLSITMQGRL 241

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                            +    I                 +            L      
Sbjct: 242 -------------QTPQEFENIILRVNEDNSFLRIKDIAQVEIGAEQYNSTGRLNISAAV 288

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I + ++  +   T +        L           +          S      T    
Sbjct: 289 PIIINLQSGANAVNTAKLIEEKMQELSKNFPQGLKYKIPYDTTIFVKASIKEVIKTFIEA 348

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LVLIV+++ +   +  ++   ++ ++++ T A+L LLG ++ L ++  ++L IG+ VD
Sbjct: 349 LALVLIVMYLFLKNFRSTIIPMIAVPVSLLGTFAILYLLGFSINLLTLFALILAIGIVVD 408

Query: 430 SNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG--GGA 484
             I+V E I     ++ +      ++      +   I    +   +   V F  G  G  
Sbjct: 409 DAIIVVENIDRILHEDPNISVKDAAIQAMNEVSSPVISIVLVLCAVFIPVSFISGFVGEI 468

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
            R FA+T+ +S+ IS F A+++  ++    +   + K          F            
Sbjct: 469 QRQFALTLAISVAISGFVALTLTPSLSALFLTRNESKPFYFVQKFNDFFDWSTSVFSNGV 528

Query: 545 ----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
                R     +     I +I  L+    N  +  +    + +        S +   +E 
Sbjct: 529 AYILKRTIRFLLLFCIMIGAIIYLYKIVPNSLVPSEDQGVI-MSIINLPSGSSIHRTIEE 587

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +   + +    +  ++ +  + Y    S  +     +  K     
Sbjct: 588 VDTINKNVTQIESIESSVSLIGYDLFTSSLKENAAAVFFKLKDWS 632



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 92/248 (37%), Gaps = 13/248 (5%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  +       +  + + +        ++       ++V   +++E   +++++  P   
Sbjct: 263 IKDIAQVEIGAEQYNSTGRLNISAAVPIIINLQSGANAVNTAKLIEEKMQELSKNFPQGL 322

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
                       +  I++ I   I +   +LI +++  K +   +  +  + + +  T  
Sbjct: 323 KYKIPYDTTIFVKASIKEVIKTFIEALALVLIVMYLFLKNFRSTIIPMIAVPVSLLGTFA 382

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G   NL  + A++  IG  V+D ++V + +   +     +IS +D   +++NE  
Sbjct: 383 ILYLLGFSINLLTLFALILAIGIVVDDAIIVVENI-DRILHEDPNISVKDAAIQAMNEVS 441

Query: 770 GRSVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              +    +  + +  + +       + G +   FA+ +A  + ++   ++ +   +   
Sbjct: 442 SPVI----SIVLVLCAVFIPVSFISGFVGEIQRQFALTLAISVAISGFVALTLTPSLSAL 497

Query: 823 IYDWRAKN 830
                   
Sbjct: 498 FLTRNESK 505



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 65/187 (34%), Gaps = 10/187 (5%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                          G    I+  + + + +  ++ +W      IT +   +  +    AL
Sbjct: 853  WSGSAYQEVSSKGTGAYAFILGMVFVFLILAAQYERWLMPFAVITAVPFAVFGSFLLVAL 912

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++     +L LIG S  + +++ +   +         S  +    +        V
Sbjct: 913  RGFDNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RLKKGKSVFEAAINAAKLRFRPIV 970

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR--- 827
             TS+A    VLPM      G +   +    +  G++ A++ +IF        + ++    
Sbjct: 971  MTSLAFTFGVLPMIFATGAGSASRHALGTGLVGGMIAASTLAIFFVPLFFYLLENFNEWL 1030

Query: 828  -AKNARI 833
              K  ++
Sbjct: 1031 DKKRGKV 1037


>gi|320328867|gb|EFW84866.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 1063

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 68/595 (11%), Positives = 158/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTELDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVTEE-------------EFENVVVRAGADGEITCLKDVARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVQATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS   ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISALNSLTLSPALAAVLLKGHDAPKDRFSRFLDRILGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQD 577



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 72/201 (35%), Gaps = 10/201 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAMLIYIWIRFKWYF 692
              +  + +++              ++ + I  G   + +      +A L+       W  
Sbjct: 847  QAQAAVEKLLREELPNGMVYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQYESWSL 906

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I  + + +   +    + G + N+     ++ L+G +  + +++ +  +       
Sbjct: 907  PLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAKD---KQA 963

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +S  D + ++    L   + TS A  + V+P+ +    G  +  +  + +  G++   
Sbjct: 964  EGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGMLGVT 1023

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
               + +     + I ++  + 
Sbjct: 1024 FFGLLLTPVFYVLIRNYVERQ 1044



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVQATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISALNSLTLSPALAAVLLK 500


>gi|239905072|ref|YP_002951811.1| efflux system protein [Desulfovibrio magneticus RS-1]
 gi|239794936|dbj|BAH73925.1| efflux system protein [Desulfovibrio magneticus RS-1]
          Length = 1043

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 67/577 (11%), Positives = 168/577 (29%), Gaps = 42/577 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G +  L        + ++P  +P               + +    
Sbjct: 8   RPVFSAVISIVITLVGAICIL-----TLPIAQYPQIVPPT-------------VQVSATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
           D      ++   +  +   +   + +   +     +    + ++F  SR  +     V  
Sbjct: 50  DGASAQVVEESVATPIEQEVNGAQDMLYMNSVSSNDGRMVLNVTFDISRDLDLATVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   NS+L  +     +    +    +++   +        +  +        D +   
Sbjct: 110 RVALANSRLPSEVVSRGISVKKQSPDMLLVINLSSPDGSRDTLFLNNYAKINITDALARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +L  T++ ++      N        G+       
Sbjct: 170 PGVGNVAVFGERDYGMRVWLDPDKLARLGLTSSDVAQAIREQNVQAPAGQIGLPPAPPGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V+ K  ++                +    I     GA          +       
Sbjct: 230 EFQLSVQVKGRLA-------------DPEEFADIIVRTGKGAEMVRVRDVGRVELGSQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +    +E    + A       P     +          
Sbjct: 277 SAFTRLNGNPTCTIQVYQLPGANALDVVEKIRAIMAEQAGYFPPGVSYTIPYDTTKFVTA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+++ +  G+  L+   ++ ++++   A + + G ++   ++
Sbjct: 337 SIHEVIKTLFEAVLLVLIVVYVFLQNGRATLIPMLTVPVSLVGAFAFMQVFGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E ++ +    +     +     +     +   ++  +   V 
Sbjct: 397 FGLVLAIGIVVDDAIVVVEAVQHKIDHEKLPPREATKAAMAEVAGPVIAISLVLISVFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRF 531
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I+R        +        
Sbjct: 457 VAFMGGVTGRLYQQFALTLAVSVALSAICALTLSPALCALILRPAGEGKGPLGAFFRGFN 516

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
            +   C        R     + +              
Sbjct: 517 RVFDACTRGYAAGVRVAIRRMLLTIICLFAVGAGAWH 553



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 62/157 (39%), Gaps = 7/157 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            + +    ++ + + + +  +++ W      I  + + +   +G   L G+E N+ A   +
Sbjct: 871  QSVFIFGLALLMVFLVLAAQYESWAVPFAVILAVPMAVLGAMGAQMLRGLENNVYAQIGL 930

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG +  + +++ +  +     +    S  +    +        + TS A  + V+PM
Sbjct: 931  VMLIGLAAKNAILIVEFAK---ARHEAGDSPAEAAVSASILRFRPILMTSFAFILGVVPM 987

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             V    G +   +    +  G++ A    ++    + 
Sbjct: 988  LVAKGAGAASRHALGTAVFGGMIAATVLGVYFVPALY 1024


>gi|212694238|ref|ZP_03302366.1| hypothetical protein BACDOR_03764 [Bacteroides dorei DSM 17855]
 gi|212663225|gb|EEB23799.1| hypothetical protein BACDOR_03764 [Bacteroides dorei DSM 17855]
          Length = 1037

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 94/694 (13%), Positives = 210/694 (30%), Gaps = 48/694 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++           ++++P   P   I+                 
Sbjct: 9   RPVFSGVISVVIVLLGMISMF-----SLPVEQYPDIAPPT-IN--------VFATYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +E  + ++       +        I + F      +  A  V   + G
Sbjct: 55  AETVQKAVITPLEEAINGVEDMTYMTSTASNTGDASINIYFKQGTNADMAAVNVQNRVNG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +  K  + T  ++   ++                +  +      ++       
Sbjct: 115 ALSQLPAEATKTGVTTEKQQNAELMTFALYSPDDRFDQTFLNNYVKINVEPRLKRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P ++ Q       +S      N       FG         N+Y
Sbjct: 175 KAQLFGS-NYSMRLWLRPDKMAQYGLIPDDISTVLARQNIEAATGSFGANHPT---ANEY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +SG               +    +     G          ++           
Sbjct: 231 TMKYRGRLSGAE-------------EFGELVIKSLPGGNVLRLKEVADVELGDEYYNYSS 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        + + KA  + + TI+    +   L          +V          S + 
Sbjct: 278 EVNGHPAAMMLINQKAGSNASSTIKEIHEVLDDLSRDLPEGTEFVVLTDTNKFLYASINS 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   K  L+   SIF+++I T A++S++G ++ L ++  +V
Sbjct: 338 VIRTLIEAILLVIVVVYVFLQDIKSTLIPTISIFVSIIGTFAVMSMIGFSVNLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++ +  +   S   + D       S I  S I  +     +   
Sbjct: 398 LAIGTVVDDAIVVVEAVQAKFDEGYQSAVLAADDAMKGVSSAILTSTIIFMAVFFPVAMM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------------IRYKKMKSIDI 525
           GG +      F ITM +++ IS   A ++  A+   +              +        
Sbjct: 458 GGTSGAFYTQFGITMAVAVGISAVNAFTLSPALCALLLKPYIDEQGNTKNNFAARFRKAF 517

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           N +           + F+  R W +   I  S   + LL        I  +    + V  
Sbjct: 518 NAVFDRLSRRYVRGVMFIIHRRWLLWSIIGISFGLLVLLVNVTKTGLIPEEDTGTVMVSM 577

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           N     S+ +++    +I        + E +  V      G   +Q      +K      
Sbjct: 578 NTKPGTSMAQTSKVMERINSRLDSIGEIEYSGAVAGFSFSGSGPSQAMYFVTLKDWEQRK 637

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
               ++ +        + ++    +  +    IA
Sbjct: 638 GEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIA 671



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ + I  T    ++ G   NL  + A++  IG  V+D +VV + ++   
Sbjct: 359 DIKSTLIPTISIFVSIIGTFAVMSMIGFSVNLLTLFALVLAIGTVVDDAIVVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                S       D ++       + +++       P+A+ GG+       F I MA  +
Sbjct: 419 DEGYQSAVL--AADDAMKGVSSAILTSTIIFMAVFFPVAMMGGTSGAFYTQFGITMAVAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A ++  ++  +   +  
Sbjct: 477 GISAVNAFTLSPALCALLLK 496



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/418 (9%), Positives = 117/418 (27%), Gaps = 21/418 (5%)

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +  +     ++  + +    S++    + Y+   D     + A       G G   GF +
Sbjct: 622  SQAMYFVTLKDWEQRKGEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIAGYGMGNGFEL 681

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +      ++          +  + +  ++  +  +  + +      I            
Sbjct: 682  YLQDKAGGNIAAFKEEADKFVEALSQRPEIGEVYSSFATDYPQYWVDIDAAKCEQSGVSP 741

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF-- 608
               +          +    N        + +   A   V+   +         G +S   
Sbjct: 742  ADVLSTLSGYYTGQYVSDFNR-FSKLYHVTMQAPAEYRVNAESLHHMYVRATDGGMSPLS 800

Query: 609  -----QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                    +G  +      +                + +  I   +          +   
Sbjct: 801  RFVRLTKTNGPSDLTRFNLFNAISISGSPAQGYSSGQVLEAIGETAREVLPSNYTYEFGG 860

Query: 664  ELIRKGIV---GVIISAIAM----LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                +        +I  + M    LI   +    +     + ++   +  +  F  LFG+
Sbjct: 861  ISREESKTTNNATLIFLLCMVLVYLILCALYESVFIPFAVLLSVPCGLMGSFLFAWLFGL 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            E N+     ++ +IG      +++ +      K  +  ++       +    L   + T 
Sbjct: 921  ENNIYMQTGLIMIIGLLAKTAILLTE---YAGKRRSEGMTLAQAAYSAAKVRLRPILMTV 977

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++    ++P+ +    G +   S A  +  G++V   + +F+   + +     + +  
Sbjct: 978  LSMVFGLVPLMMAHGVGANGSRSLATGVIGGMIVGTLALLFLVPSLFIVFQYIQERVK 1035


>gi|71736728|ref|YP_274481.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557281|gb|AAZ36492.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 1063

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 159/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVAAPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTELDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVTEE-------------EFENVVVRAGADGEITRLKDVARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKKSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVQATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKGHDAPKDRFSRFLDRILGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQD 577



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 72/201 (35%), Gaps = 10/201 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAMLIYIWIRFKWYF 692
              +  + +++              ++ + I  G   + +      +A L+       W  
Sbjct: 847  QAQAAVEKLLREELPNGMVYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQYESWSL 906

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I  + + +   +    + G + N+     ++ L+G +  + +++ +  +       
Sbjct: 907  PLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAKD---KQA 963

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +S  D + ++    L   + TS A  + V+P+ +    G  +  +  + +  G++   
Sbjct: 964  EGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGMLGVT 1023

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
               + +     + I ++  + 
Sbjct: 1024 FFGLLLTPVFYVLIRNYVERQ 1044



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +       K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVQATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|261392065|emb|CAX49558.1| drug efflux transport protein MtrD [Neisseria meningitidis 8013]
          Length = 1067

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 160/570 (28%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMADEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI +S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIALSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 102/291 (35%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    +++       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 95/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMADEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I ++A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIALSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|319779582|ref|YP_004130495.1| putative efflux system transmembrane protein [Taylorella
           equigenitalis MCE9]
 gi|317109606|gb|ADU92352.1| putative efflux system transmembrane protein [Taylorella
           equigenitalis MCE9]
          Length = 1069

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 181/689 (26%), Gaps = 41/689 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    + ++P   P               + +    
Sbjct: 8   RPIFAWVVAILISLFGYIS-----LTNMPISQYPEVAPP-------------SVTVSAIY 49

Query: 63  DDFV-NGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +  + S L            +        T++F            V  
Sbjct: 50  PGASPQEQSDQVTSVIESQLSGVKNMIYYSSTTSTNGMASTTVTFEPGTDPALAQIDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  + S+L     +  L  + +    +++            +E +  I     + +   
Sbjct: 110 VVSNITSQLPAAVIQQGLTFSRKNSNFLMIGSLYSPNNEFTPLELADYIENNIKNSLTSL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   Q          L    +P++L     T   +       N S    + G   + +  
Sbjct: 170 KGVGQFQVFGA-NKSLRVWVNPNKLSSFNLTITDVVNAITSQNISISAGVLGSPPVPEEQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               ++    ++                      +                NI    +  
Sbjct: 229 TFTAVITANGQL-------------QSVEDFKNVVLTARPDGSSVKLKDVANIEIGNSSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          S     +   T          L +         +   +      
Sbjct: 276 AFSAALNGKANVSFAISLAPGANAIETNGLVLEELKQLSSFFPEGIKYSIPYDSTPYVKS 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +    T      LV IV+F+ +   ++ L+    + + ++ T+ +L  LG ++ + S+
Sbjct: 336 TLNKVFNTLIEAIVLVFIVMFLFLQNWRYTLIPAIVVPIALLGTITVLLALGYSINILSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    I    +  ++    
Sbjct: 396 FAMVLAIGILVDDAIVVVENVERIMATEKLPPKAATIKAMPQISGAIIGITLVLIVVFFP 455

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F     G     FA+TM +SI  S F AI++  A+   +++              +F 
Sbjct: 456 LIFMSGSAGIIYEQFAVTMAISIAFSGFLAITLSPALCATLLKPVTKDPHSKRGFFGWFN 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                           +     F +     L                        V   V
Sbjct: 516 RSFEWVTGRYSKGVASLIRKSFFMMILYLGLVFGTFFTFSRLPTSFLPQEDQGYVVTNIV 575

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           + + + + +  D+  Q         +   +      +            T + P +    
Sbjct: 576 LPTGVSAKRTQDVIDQVGAYYMKNPLVENFIGIRGFSFNGTGLNAGLAFTTLKPFNQRLR 635

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLI 682
            +   P I+       + G+  + +  ++
Sbjct: 636 PDQSAPAIAGAATGALMYGIPDAIVFSIV 664



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +          S                   +++    ++    K+++   P 
Sbjct: 260 VKLKDVANIEIGNSSYAFSAALNGKANVSFAISLAPGANAIETNGLVLEELKQLSSFFPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +         +  + K    +I + + + I +++  + W + L     + + +  T
Sbjct: 320 GIKYSIPYDSTPYVKSTLNKVFNTLIEAIVLVFIVMFLFLQNWRYTLIPAIVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +      G   N+ ++ A++  IG  V+D +VV + +     + T  +  +    K++ +
Sbjct: 380 ITVLLALGYSINILSMFAMVLAIGILVDDAIVVVENV--ERIMATEKLPPKAATIKAMPQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++   +   P+    G   +I   FA+ MA  I  +   +I ++  +   + 
Sbjct: 438 ISGAIIGITLVLIVVFFPLIFMSGSAGIIYEQFAVTMAISIAFSGFLAITLSPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 98/297 (32%), Gaps = 8/297 (2%)

Query: 517  YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                  + IN      L     +I  +     G  ++  F +                  
Sbjct: 719  PGPQLDLKINREKAATLGVPIASIANVIRVAMGSSMAGKFPLEGRLRNVWVQAEGDYRDS 778

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
                L +         V  SNL +    +   Q         + +   P    A    ++
Sbjct: 779  LDDILKLKVKNINGQLVDISNLVTTSWSNGPSQVKRFNGYEAINISATPAPGYANGDAMK 838

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
             V+  +++ +P         +  +  +    +  + + ++ + + + +   ++ W   L 
Sbjct: 839  AVEDTVSQKLPKGYGVEWSGLSYQEVQA-GNQAPIMLGLAVLVIFLVLAALYESWTIPLA 897

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            AI  + + I  T+      G+  ++     ++T++G SV + +++ +  +  +       
Sbjct: 898  AILIVPMGIFGTVMITRFLGLANDIYFQVGLITVMGLSVKNAILIVEFAKDAVAE---GK 954

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
               +    + +      V TS+A  + V+P+ +    G +   +    +  G++ A 
Sbjct: 955  DLWEAAVDAAHLRFRPIVMTSLAFIMGVIPLTMATGEGAASQKAIGFSVLGGMLAAT 1011


>gi|295701079|ref|YP_003608972.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1002]
 gi|295440292|gb|ADG19461.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1002]
          Length = 1077

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 65/573 (11%), Positives = 150/573 (26%), Gaps = 39/573 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +           + ++P   P               + +    
Sbjct: 10  RPIFASVISIVITLGGAIAMF-----ALPVAQYPDVTPP-------------QITVSATY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   +        +   S       + + F      E     V  
Sbjct: 52  PGASAEVVANNVAAPIEQQVNGADNMIYMNSSSSSTGAFTLNVYFNIGTNPELAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    +   +    +    +++           A   +       +D I   
Sbjct: 112 RVNLALPQLPSSVQSQGVQVQKKSSAFMMVIAVYSPTDRYDATYIANFTNIYVLDAIKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ QL  T A +       N        G      + 
Sbjct: 172 PGANQSSIFGNPDYAMRIWLKPDRMAQLGVTAADVQKVVSNQNQQFAVGSIGQSPTGSAV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V     ++              +    + +     GA                  
Sbjct: 232 QQSFAVTTTGRLA------------EPSQFDNIIVRAASGGAAIVRLKDIGRAELGQKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +      A L+          +          
Sbjct: 280 SIRSRFQGKPATVLAVYQQPGANALEVSKQVRKTLAELKKSFPEGMTYEIAMDTTEFTRA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV+IV+F+ +   +  L+   ++ ++++ T   + L+G ++ + ++
Sbjct: 340 SISDVIHTFFEALVLVVIVVFVFLQSLRATLIPIVAVPVSIVGTCMFMLLVGFSINMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +         S   +  M        +    +      V 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMTVHKLSPKEAAKMAMDEVAGPVVAIVLVLCAVFVP 459

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FAIT+ +S+++S   A+++  A+   +++    +            
Sbjct: 460 VAFLGGITGQLYKQFAITIAISVVLSGIVALTLSPALAALLLKSTHHEKKGFFRWFDNQF 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
                             I  L    ++  L  
Sbjct: 520 ARMTAGYTRAVKVVIKRCIMGLVFFVALIALSV 552



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 52/123 (42%), Gaps = 5/123 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  I  + + I  T  F  L G   N+  +  ++  IG  V+D +VV + +    
Sbjct: 365 SLRATLIPIVAVPVSIVGTCMFMLLVGFSINMLTLFGMVLAIGIVVDDAIVVIENV--ER 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S ++    +++E  G  V   +      +P+A  G   G +   FAI +A  +
Sbjct: 423 NMTVHKLSPKEAAKMAMDEVAGPVVAIVLVLCAVFVPVAFLGGITGQLYKQFAITIAISV 482

Query: 806 VVA 808
           V++
Sbjct: 483 VLS 485



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/201 (13%), Positives = 72/201 (35%), Gaps = 9/201 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFA 693
             V   + E+              +   E    G  G++     +++++ +     KW   
Sbjct: 841  QVISTLEELAAQMPDGYDIAWSGEAFEERQSGGTSGLVFVFGMVMVFLILAAQYEKWTLP 900

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             G +  +   +   L    L G+  ++     +  L+  +  + +++++     +    T
Sbjct: 901  FGVLMAVPFALFGALLAIMLRGLSNDVYFQIGLTMLVALAAKNAILIFEFA---VLNRET 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAAS 810
              S  D    +  E L   V TS+A  +  +P+A+  G+      S    +  G++ A +
Sbjct: 958  GASVFDATMTAAEERLRPIVMTSLAFILGCVPLAIATGASANSRHSIGTGVIGGMLGATA 1017

Query: 811  SSIFIAAPILLFIYDWRAKNA 831
             ++F        +    +++ 
Sbjct: 1018 IAVFFIPMFYYLLESMSSRSK 1038


>gi|325204672|gb|ADZ00126.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis M01-240355]
          Length = 1067

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 158/574 (27%), Gaps = 48/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS                 ++ L    
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAP-------------NITLRATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   +       ++L+F     ++    +V  
Sbjct: 50  PGASAQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPETNEDLAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   
Sbjct: 110 KLSEVLSMLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q          +    DP +L+    + A +       N        G        
Sbjct: 168 EGVGQVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  + ++                 +    I          +      +G  +   
Sbjct: 227 TVTATVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +      A L                      
Sbjct: 274 SSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEI 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++
Sbjct: 334 SIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    +       +   V 
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVP 453

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L  F    G   + FA+TM  SI  S F A+++  A+         +K+I          
Sbjct: 454 LAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKG 508

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                  +F        G        +  ++  +
Sbjct: 509 FFGWFNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 101/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|300022674|ref|YP_003755285.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299524495|gb|ADJ22964.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 1054

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 63/573 (10%), Positives = 154/573 (26%), Gaps = 40/573 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G +        +  + ++P   P               + +    
Sbjct: 10  RPIFAAVVSIVIMILGAVSV-----TRLPIAQYPDIAPPV-------------VNVTGQY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +        I   S    +  I+++F      +    +V  
Sbjct: 52  PGASAEVVAATVATPLEQQINGVERMLFISSNSTNDGRFSISVTFDIGTNLDIAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  D +   +         +++            +  S       +D +   
Sbjct: 112 RVAIAQPRLPADVRNIGVTVAKASPDLMMVVHLLSPDNSRDTLFISNYANVNLVDTLSRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP RL+ L  T   +       N      +     ++D  
Sbjct: 172 QGIGSITVFGGRDYSMRVWLDPDRLQSLAMTAGDVVTALQGQNVQVAAGILNQPPMKDPG 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V+    +                 K   +I     G                   
Sbjct: 232 AFQITVQTLGRL--------------ADPKQFGEIIVKRSGDAVVRLKDVARTELAGLDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +        +     P     +          
Sbjct: 278 GVNSYLDKTAAVGLGVFQLPGSNAIDTAQKIKDTMEEISKNFPPGIKYDIIYNPTDYIQQ 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV++V+ + +   +  ++   +I ++++ T  ++++ G +L   S+
Sbjct: 338 SVNAVVETILEAIVLVVLVVVLFLQTWRAAIIPIVAIPVSLVGTFFIMAMFGFSLNNLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E +        S   +          A   I        + +
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERNIANGLSPREASYRTMEEVGTALIAIALVLTAVFVPS 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   R FA+T+  + +IS+  ++++  A+   +++           +      
Sbjct: 458 AFITGISGQFYRQFALTIAGATVISLIVSLTLSPALCALLLKPHAETHRSSLIMWPVHAF 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                  F +               ++ +L  +
Sbjct: 518 FRLFNWSFDKLSSGYSWFVGKIVRFAVIMLVVY 550



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/200 (11%), Positives = 64/200 (32%), Gaps = 8/200 (4%)

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
                   + +K+                           I    +    + + +  +F+ 
Sbjct: 841  SQGQAIDIMQKLAAETLPPGFSYEWTDLAFQQIRAGNTAIFAFALGVAFVFLVLAAQFES 900

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
                L  I  + + +  ++    L G++ N+      + LIG +  + +++ +   + ++
Sbjct: 901  LTLPLAVILIVPMSLIASITGVILRGMDNNILTQVGFIVLIGLAAKNAILIVE-FAEQLE 959

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                         ++    +   + TS+A  + V+P+      G  +  +    +  G++
Sbjct: 960  A--QGRDRFAAATEAARLRMRPILMTSLAFILGVVPLVWAVGAGAELRQALGTAVFSGMI 1017

Query: 807  VAASSSIFIAAPILLFIYDW 826
                  + I  P+   I  W
Sbjct: 1018 GVTVFGL-IFTPVFYVICRW 1036



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 46/550 (8%), Positives = 134/550 (24%), Gaps = 62/550 (11%)

Query: 7    LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
               +  ++  +GL+    N   ++ +   P              + G +L+  V      
Sbjct: 541  RFAVIMLVVYVGLIAFGLNEFRKTPIGFIPD-------------QDGGYLITVVQLPPAA 587

Query: 67   N----GFLQMYSDELRSFLKKEGIGVFSMRQIQNK---------ITLSFAD----SRFKE 109
                   +     +L   +      V  +               + +        SR   
Sbjct: 588  ALDRTDAVNRRIVDLALTVPGVAHAVSIVGFSGATRVNASNAGAVFIVLKPFEERSRDPA 647

Query: 110  NIADKVTL----FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
              A  +          +   + +      +          ++ +N      +   +    
Sbjct: 648  QSAKGIQSALLAKFSAIQEGMVLVVSPPPVRGLGSAGGFRMMVENRSGASSTVLQDAVNA 707

Query: 166  IIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
            ++ +     G+      ++ S           D  R++  +           L +     
Sbjct: 708  MMGKAAQTPGV-----MQVFSLFETATPQLYLDIDRVKAEMLGINIPEVFAALQSYLGSI 762

Query: 226  FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
            ++     +  +       +    ++                 P+   +     +      
Sbjct: 763  YVNDFNIIGRTYRVTAQADSAYRLTSKDALNIRVRNANGDAVPLGSFTTISDVSGPSRVP 822

Query: 286  TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
              +                               +  F+   A  +   L A +LP   +
Sbjct: 823  RYNLY--------------------PAAELDGSAAPGFSQGQAIDIMQKLAAETLPPGFS 862

Query: 346  IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
                      + + +      A+    V +VL          L     + +++I ++  +
Sbjct: 863  YEWTDLAFQQIRAGNTAIFAFALGVAFVFLVLAAQFESLTLPLAVILIVPMSLIASITGV 922

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             L G    + +  G ++ IGLA  + IL+ E   +   + +  F +           I  
Sbjct: 923  ILRGMDNNILTQVGFIVLIGLAAKNAILIVEFAEQLEAQGRDRFAAATEAARLRMRPILM 982

Query: 466  SNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++  ++  V L +    G    +     +   ++      +       +       +  
Sbjct: 983  TSLAFILGVVPLVWAVGAGAELRQALGTAVFSGMIGVTVFGLIFTPVFYVICRWLAGLGR 1042

Query: 523  IDINPLSRFF 532
                      
Sbjct: 1043 RRRAEPELHP 1052


>gi|317480620|ref|ZP_07939708.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
 gi|316903246|gb|EFV25112.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
          Length = 1037

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 94/694 (13%), Positives = 209/694 (30%), Gaps = 48/694 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++           ++++P   P   I+                 
Sbjct: 9   RPVFSGVISVVIVLLGMISMF-----SLPVEQYPDIAPPT-IN--------VFATYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +E  + ++       +        I + F      +  A  V   + G
Sbjct: 55  AETVQKAVITPLEEAINGVEDMTYMTSTASNTGDASINIYFKQGTNADMAAVNVQNRVNG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +  K  + T  ++   ++                +  +      ++       
Sbjct: 115 ALSQLPAEATKTGVTTEKQQNAELMTFALYSPDDRFDQTFLNNYVKINVEPRLKRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P ++ Q       +S      N       FG         N+Y
Sbjct: 175 KAQLFGS-NYSMRLWLRPDKMAQYGLIPDDISTVLARQNIEAATGSFGANHPT---ANEY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +SG               +    +     G          ++           
Sbjct: 231 TMKYRGRLSGAE-------------EFGELVIKSLPGGNVLRLKEVADVELGDEYYNYSS 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        + + KA  + + TI+    +   L          +V          S   
Sbjct: 278 EVNGHPAAMMLINQKAGSNASSTIKEIHEVLDDLSRDLPEGTEFVVLTDTNKFLYASIHS 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   K  L+   SIF+++I T A++S++G ++ L ++  +V
Sbjct: 338 VLRTLLEAILLVIVVVYVFLQDIKSTLIPTISIFVSIIGTFAVMSMIGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++ +  +   S   + D       S I  S I  +     +   
Sbjct: 398 LAIGTVVDDAIVVVEAVQAKFDEGYQSAVLAADDAMKGVSSAILTSTIIFMAVFFPVAMM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------------IRYKKMKSIDI 525
           GG +      F ITM +++ IS   A ++  A+   +              +        
Sbjct: 458 GGTSGAFYTQFGITMAVAVGISAVNAFTLSPALCALLLKPYIDEQGNTKNNFAARFRKAF 517

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           N +           + F+  R W +   I  S   + LL        I  +    + V  
Sbjct: 518 NAVFDSLSRRYVRGVMFIIHRRWLLWSIIGISFGLLVLLVNVTKTGLIPEEDTGTVMVSM 577

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           N     S+ +++    +I        + E +  V      G   +Q      +K      
Sbjct: 578 NTKPGTSMAQTSKVMERINSRLDSIGEIEYSGAVAGFSFSGSGPSQAMYFVTLKDWEQRK 637

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
               ++ +        + ++    +  +    IA
Sbjct: 638 GEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIA 671



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ + I  T    ++ G   NL  + A++  IG  V+D +VV + ++   
Sbjct: 359 DIKSTLIPTISIFVSIIGTFAVMSMIGFSINLLTLFALVLAIGTVVDDAIVVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                S       D ++       + +++       P+A+ GG+       F I MA  +
Sbjct: 419 DEGYQSAVL--AADDAMKGVSSAILTSTIIFMAVFFPVAMMGGTSGAFYTQFGITMAVAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A ++  ++  +   +  
Sbjct: 477 GISAVNAFTLSPALCALLLK 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/418 (9%), Positives = 117/418 (27%), Gaps = 21/418 (5%)

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +  +     ++  + +    S++    + Y+   D     + A       G G   GF +
Sbjct: 622  SQAMYFVTLKDWEQRKGEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIAGYGMGNGFEL 681

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +      ++          +  + +  ++  +  +  + +      I            
Sbjct: 682  YLQDKAGGNIAAFKEEADKFVEALSQRPEIGEVYSSFATDYPQYWVDIDAAKCEQSGVSP 741

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF-- 608
               +          +    N        + +   A   V+   +         G +S   
Sbjct: 742  ADVLSTLSGYYTGQYVSDFNR-FSKLYHVTMQAPAEYRVNAESLHHMYVRATDGGMSPLS 800

Query: 609  -----QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                    +G  +      +                + +  I   +          +   
Sbjct: 801  RFVRLTKTNGPSDLTRFNLFNAISISGSPAQGYSSGQVLEAIGETAREVLPSNYTYEFGG 860

Query: 664  ELIRKGIV---GVIISAIAM----LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                +        +I  + M    LI   +    +     + ++   +  +  F  LFG+
Sbjct: 861  ISREESKTTNNATLIFLLCMVLVYLILCALYESVFIPFAVLLSVPCGLMGSFLFAWLFGL 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            E N+     ++ +IG      +++ +      K  +  ++       +    L   + T 
Sbjct: 921  ENNIYMQTGLIMIIGLLAKTAILLTE---YAGKRRSEGMTLAQAAYSAAKVRLRPILMTV 977

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++    ++P+ +    G +   S A  +  G++V   + +F+   + +     + +  
Sbjct: 978  LSMVFGLVPLMMAHGVGANGSRSLATGVIGGMIVGTLALLFLVPSLFIVFQYIQERVK 1035


>gi|237716523|ref|ZP_04547004.1| multidrug resistance protein [Bacteroides sp. D1]
 gi|262405302|ref|ZP_06081852.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|301308328|ref|ZP_07214282.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           20_3]
 gi|229442506|gb|EEO48297.1| multidrug resistance protein [Bacteroides sp. D1]
 gi|262356177|gb|EEZ05267.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|300833798|gb|EFK64414.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           20_3]
          Length = 1037

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 96/698 (13%), Positives = 206/698 (29%), Gaps = 56/698 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++           ++++P   P               + +    
Sbjct: 9   RPVFSGVISVVIVLLGVIAMF-----SLPVEQYPDIAPPT-------------INVWASY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +Q      L   +   E +   +          I + F      +  A  V  
Sbjct: 51  PGANAETVQKAVIVPLEEAINGVEDMTYMTSTASNTGDASINIYFKQGANADMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  +  K  + T  ++   ++                +  +      ++   
Sbjct: 111 RVNAALSQLPAEATKTGVTTEKQQNAELLTFALYSPDDRFDQTFLNNYMKINVEPRLKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P R+ Q       +S      N       FG        
Sbjct: 171 SGVGKAQLFGS-NYSMRLWLKPDRMAQYGLIPDDISAVLARQNIEAATGSFGANHPT--- 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N+Y ++ +  +SG               +    +     G          ++       
Sbjct: 227 ANEYTMKYRGRLSGAD-------------EFGELVVKSLPGGNVLRLKEVADVELGDEYY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        + + KA  + + TI     +   L          +V          
Sbjct: 274 NYSSQVNGHPAAMMMINQKAGSNASSTINEIHEVLHELDRDLPEGAEFVVLTDTNKFLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   K  L+   SIF+++I T A++S++G ++ L ++
Sbjct: 334 SIRSVIRTLLEAILLVIVVVYVFLQDIKSTLIPAISIFVSIIGTFAVMSMIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG  VD  I+V E ++ +  +   S   + D       S I  S I  +     
Sbjct: 394 FALVLAIGTVVDDAIVVVEAVQAKFDEGYQSAVLAADDAMKDVSSAILTSTIIFMAVFFP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------------MK 521
           +   GG +      F ITM +++ IS   A ++  A+   +++                 
Sbjct: 454 VAMMGGTSGAFYAQFGITMAVAVGISAINAFTLSPALCALLLKPYIDEHGNTKDNFAARF 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
               N +           + F+  R W +  SI  S   + LL        I  +    +
Sbjct: 514 RKAFNAVFYRLSRRYVRGVMFILHRRWLMWSSIAVSFVLLVLLVNATKTGLIPEEDTGTV 573

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V  N     S+ ++     +I        + E N  V      G   +Q      +K  
Sbjct: 574 MVSMNTKPGTSMAQTVKVMERINSRLDSIGEIEYNGAVAGFSFSGSGPSQAMYFVTLKDW 633

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                   ++ +        + ++    +  +    IA
Sbjct: 634 EQREGEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIA 671



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 118/362 (32%), Gaps = 11/362 (3%)

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + T  L+       + F        +      IS V    +F   Y     +  + ++++
Sbjct: 138 LLTFALYSPDDRFDQTFLNNYMKINVEPRLKRISGVGKAQLFGSNYSMRLWLKPDRMAQY 197

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIPD I+    R        S   +  +                   +L V +    ++
Sbjct: 198 GLIPDDISAVLARQNIEAATGSFGANHPTANEYTMKYRGRLSGADEFGELVVKSLPGGNV 257

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             ++   +     +    +     +    +          +  +  + + + E+      
Sbjct: 258 LRLKEVADVELGDEYYNYSSQVNGHPAAMMMINQKAGSNASSTINEIHEVLHELDRDLPE 317

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI-----AMLIYIWIRFKWYFALGAITTLILDITK 706
               +V    ++ L    I  VI + +      +++           L    ++ + I  
Sbjct: 318 GAEFVVLTDTNKFL-YASIRSVIRTLLEAILLVIVVVYVFLQDIKSTLIPAISIFVSIIG 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T    ++ G   NL  + A++  IG  V+D +VV + ++        S       D ++ 
Sbjct: 377 TFAVMSMIGFSINLLTLFALVLAIGTVVDDAIVVVEAVQAKFDEGYQSAVL--AADDAMK 434

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +     + +++       P+A+ GG+       F I MA  + ++A ++  ++  +   +
Sbjct: 435 DVSSAILTSTIIFMAVFFPVAMMGGTSGAFYAQFGITMAVAVGISAINAFTLSPALCALL 494

Query: 824 YD 825
             
Sbjct: 495 LK 496



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/417 (11%), Positives = 126/417 (30%), Gaps = 19/417 (4%)

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +  +     ++  + +    S++    + Y+   D     + A       G G   GF +
Sbjct: 622  SQAMYFVTLKDWEQREGEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIAGYGMGNGFEL 681

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM-----RA 545
             +       +          +  + +  ++  +  +  + +      I            
Sbjct: 682  YLQDKAGGDITAFKKEADKFVEALSQRPEIGEVYSSFATDYPQYWVDIDAAKCEQSGVSP 741

Query: 546  RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR----PVDLSVVRSNLESL 601
                  +S  ++   +         Y +  +   +  V A       V  S       S 
Sbjct: 742  AEVLSTLSGYYTGQYVSDFNRFSKLYHVTMQAPAEYRVNAESIHHIYVRTSDGGMAPLSR 801

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
             +             F +        S A+      V + I+E        N       I
Sbjct: 802  FVRLTKTNGPSDLTRFNLFNAISINGSPARGYSSGQVLEAISETARKVLPANYTYEFGGI 861

Query: 662  SRELIRKGIVGVIISAIAM-LIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
            SRE  +      +I  + M L+Y+    +    +     +  +   +  +  F  LFG+E
Sbjct: 862  SREESKTTNNATLIFLLCMVLVYMILCALYESVFIPFAVLLAVPCGLMGSFLFAWLFGLE 921

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             N+     ++ +IG      +++ +      K  +  ++       +    L   + T +
Sbjct: 922  NNIYMQTGLIMIIGLLAKTAILLTE---YAGKRRSEGMTLAQAAYSAAKVRLRPILMTVL 978

Query: 778  AAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    ++P+ +    G +   S A  +  G++V   + +F+   + +     + +  
Sbjct: 979  SMVFGLIPLMLAHGVGANGSRSLATGVIGGMIVGTLALLFLVPSLFIVFQYIQERIK 1035


>gi|200390869|ref|ZP_03217480.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|199603314|gb|EDZ01860.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
          Length = 1055

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTFTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGTDPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|86749359|ref|YP_485855.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           HaA2]
 gi|86572387|gb|ABD06944.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           HaA2]
          Length = 1048

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 184/689 (26%), Gaps = 45/689 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL      L    + ++P   P             + + +    
Sbjct: 8   RPVFAWVIAITIMLGGLLA-----LQTLPIAQYPQIAP-------------TTVRITGTY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S    Q++ITL+F  +   +    +V  
Sbjct: 50  AGADAQTVENSVTKVIEQGMTGIDHLDYMTSTSTSTGQSQITLTFTAAADPDVAQMQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ V + L    +   L  T      +++           +I+ +  +     D +   
Sbjct: 110 KLQLVTALLPQIVQNTGLSVTKSSTGFLMVIAFVSTDGKLTSIDLADYVNSTLNDTLKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP +L +     + ++      N        G    R   
Sbjct: 170 EGVGDTQLFGSG-YAMRIWLDPDKLAKYALMPSNVATAVEAQNTQVSAGQLGGLPSRKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I                 +       
Sbjct: 229 QLNATVTARSRL-------------QTPEQFRNIILKSTTDGSLVRLNDVATVELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +     +   T +      + L A        +           
Sbjct: 276 TTTAAFDGMPAAGLGVNLATGANALDTAKNVQSTISRLSATFPQGVSVVYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++ T+ +LS  G ++   ++
Sbjct: 336 SIEEVVKTLIEAIALVFVVMFVFLQNIRATLIPTIAVPVVLLGTVGVLSAFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +           +           + 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLSPKEATRKSMDEITGALVGIATVLSAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLS 529
           + FFGG      R F++T+  ++++S+ TA+ +  A+   I      +   K +      
Sbjct: 456 MAFFGGSVGVIYRQFSVTIVTAMVLSVITALVLTPALCATILRPPQAHATGKGLFGWFNR 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F                  +   +LF   S+ +                Q  ++ +  +
Sbjct: 516 TFDRSAQAYRNGAQGVIARSLRFGLLFVAISVGVGLMFMRIPSSFLPQEDQGVLITSVQL 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +   +            +     +                Q + + +   K+       
Sbjct: 576 PVGATQDRTLRALEQVREYYATKEKDAVDSVFYTAGFGFSGQGQNIGIAFVKLKPFDQRK 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +   +       +    R+   G++ +  
Sbjct: 636 SAALSAQAVAGRAMMAFRQIKDGMVFALA 664



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 80/197 (40%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +      +  +     + V +    +T         E+++  I  + +  + M +++ 
Sbjct: 301 DTAKNVQSTISRLSATFPQGVSVVYPYDTTPFVRLSIEEVVKTLIEAIALVFVVMFVFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T+G  + FG   N   + A++  IG  V+D +VV + + 
Sbjct: 361 ---NIRATLIPTIAVPVVLLGTVGVLSAFGYSINTLTMFAMVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +S ++   KS++E  G  V  +       +PMA +GGSV      F++ + 
Sbjct: 417 -ERVMQEEGLSPKEATRKSMDEITGALVGIATVLSAVFIPMAFFGGSVGVIYRQFSVTIV 475

Query: 803 FGIVVAASSSIFIAAPI 819
             +V++  +++ +   +
Sbjct: 476 TAMVLSVITALVLTPAL 492



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 81/266 (30%), Gaps = 9/266 (3%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
             N+ +      +  V  +  V +            G    + ++G     ++ +   G S
Sbjct: 773  RNFRMQPDDIGRWYVRNSSGVMVPFSAFASGQWSFGSPRLERYNGSAAVEIQGEAAAGVS 832

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                        K                      +      +  ++  + +     +  
Sbjct: 833  SGTAMDEIDTLVKQLPSGFGHQWTGLSAQERLSGSQATSLYAISTLVVFLCLA---ALYE 889

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   LG +  + + I   L    LFG   ++     +LT IG +  + +++ +   +  
Sbjct: 890  SWSIPLGVMLAVPIGIFGALLAALLFGQTNDVYFKVGLLTTIGLAAKNAILIVEFAIE-- 947

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                      +   ++  + L   + TS A  + V P+A+    G     S  I +  G+
Sbjct: 948  -RQAAGQPLVEATLEAARQRLRPILMTSFAFILGVTPLAIASGAGSGAQNSIGIGVMGGM 1006

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            + A    IF    + + +     + +
Sbjct: 1007 IAATVLGIFFVPLLYVGVRRLFDRKS 1032


>gi|1399758|gb|AAB41957.1| RND family exporter MexD [Pseudomonas aeruginosa]
          Length = 1043

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 82/705 (11%), Positives = 187/705 (26%), Gaps = 65/705 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GLL+       +  + ++P+  P               + +   
Sbjct: 7   KRPNFAWVVALFISLGGLLVI-----SKLPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +   +  L   L   +G+  F      N   +I ++F      +     V 
Sbjct: 49  YPGASAKVLVDSVTSVLEESLNGAKGLLYFESTNNSNGTAEIVVTFEPGTDPDLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             L+   +++        L         +++   +  +    S          R   +++
Sbjct: 109 NRLKKAEARMPQAVLTQGLQVEQTSAGFLLIYALSYKEGAQRSDTTALGDYAARNINNEL 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   +S      N       FG     
Sbjct: 169 RRLPGVGKLQFFSS-EAAMRVWIDPQKLVGFGLSIDDVSNAIRGQNVQVPAGAFGSAPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +      +  K  +                 +    +                  G   
Sbjct: 228 SAQELTATLAVKGTL-------------DDPQEFGQVVLRANEDGSLVPARRCRAPGTRQ 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
             +                   A+   +          A L A         V       
Sbjct: 275 GELQHFLATERHAHRGRGYPAVARGQRDPDPTLVKQRLAELSAFFPEDMQYSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + ++ TL ++ LLG ++ +
Sbjct: 335 VDVAIEKVIHTLIEAMVLVFLVMFLFLENVRYTLIPSIVVPVCLLGTLMVMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMAEEGISPAEATVKAMKQVSGAIVGITLVLSAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFII---------RYKKMK 521
            + L F  G      + F++++ +SIL S F A++   A+   +          +     
Sbjct: 455 FLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLFKPIPEGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +              +    RA  + +  + L ++     L         +  G + +
Sbjct: 515 AFNRGFARVTERYSLLNSKLVARAGRFMLVYAGLVAMLGYFYLRLPEAFVPAEDLGYMVV 574

Query: 582 GVLANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            V                        R  + S+ +      +  G+   L    ++    
Sbjct: 575 DVQLPPGASRVRTDATGEELERFLKSREAVASVFLISGFSFSGQGDNAALAFPTFKDWSE 634

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +        + E   L        V P     L   G   +
Sbjct: 635 RGAEQSSAAEIAALNEHFALPDDGTVMAVSPPPINGLGNSGGFAL 679



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/204 (15%), Positives = 79/204 (38%), Gaps = 6/204 (2%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
           G       +++    +++   P     +      +     I K I  +I + + + + ++
Sbjct: 299 GQRDPDPTLVKQRLAELSAFFPEDMQYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMF 358

Query: 686 IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           +  +   + L     + + +  TL    L G   N+  +  ++  IG  V+D +VV + +
Sbjct: 359 LFLENVRYTLIPSIVVPVCLLGTLMVMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV 418

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPM 801
                +    IS  +   K++ +  G  V  ++      LP+A   G   VI   F++ +
Sbjct: 419 --ERIMAEEGISPAEATVKAMKQVSGAIVGITLVLSAVFLPLAFMAGSVGVIYQQFSVSL 476

Query: 802 AFGIVVAASSSIFIAAPILLFIYD 825
           A  I+ +   ++     +   ++ 
Sbjct: 477 AVSILFSGFLALTFTPALCATLFK 500



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             W   L     LI+ I       A+   G+  ++     ++T+IG S  + +++ +  ++
Sbjct: 890  SWSIPLS--VMLIVPIGAIGAVLAVMVSGMSNDVYFKVGLITIIGLSAKNAILIVEFAKE 947

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
                     S RD   ++        + TSMA  + V+P+A+  G+      +    +  
Sbjct: 948  LW---EQGHSLRDAAIEAARLRFRPIIMTSMAFILGVIPLALASGAGAASQRAIGTGVIG 1004

Query: 804  GIVVAASSSIFIAAPILLFI 823
            G++ A    +       +++
Sbjct: 1005 GMLSATFLGVLFVPICFVWL 1024


>gi|116626860|ref|YP_829016.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116230022|gb|ABJ88731.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 1047

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 67/540 (12%), Positives = 156/540 (28%), Gaps = 28/540 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I  +G +       P   +  +P  +P +       L G +        
Sbjct: 8   RPVFAMVIAIVIVILGAVAI-----PGLPISAYPQVVPPSVQVTATYLGGNAQ------- 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E    L        +        I ++F      +  A +    +  
Sbjct: 56  --DLEKTVAQPIEEQLVGLDGMLYYQSTSANNGQLVINVTFKLGTDPDIAAVQTQNRVNV 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  ++        ++            A+  +       ++QIG      
Sbjct: 114 ALPRLPPEVQRQGVIVKKVSTAFLMAVSLVASNDQYDALFLTNYAQINLVNQIGSLAGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S + +  +    +P ++ +L  T   +S      N        G          QY
Sbjct: 174 ESRLSSQQVYSMRVWLNPDKMTKLGVTATDVSNAVQAQNRQNPAGAIGQAPAPRGTDFQY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +   +  A         +            
Sbjct: 234 AVSAPGRLT-------------DPAQFDDIVVRAQPDASLLRIRDIGHSELGAQTYNGFS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        I       +   T +        ++         +V   +      +   
Sbjct: 281 RLNGKPSANVIVYLSPGANAVQTADQVIAYMESVKPTFPKGVDYVVPYNSTMFVRAAIKD 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T     GLV++V+F+ +   +  L+   ++ + VI T  L  LLG ++ + S+ G+V
Sbjct: 341 VLVTLMEAIGLVILVVFIFLQSWRATLIPLLTVPVAVIGTFGLFPLLGFSINITSMFGLV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E ++       S   +     S   + +           + + F G
Sbjct: 401 LAIGIVVDDAIVVVEAVQRHIDDGLSPKEATSRAMSEVSAPVVAIAFILAAVFIPVAFIG 460

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G +   +           + +A S +           + +    + L+R F   +     
Sbjct: 461 GISGEIYKQFALTIAASVLLSAFSALSLSPALAALLLRPRKKTTSLLARPFTWFNRTFEW 520



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 85/268 (31%), Gaps = 10/268 (3%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                      G   +   +   V L  + +   S     I   N       L        
Sbjct: 774  PEFRDQPSSVGRFYVRNASGGMVPLDTLATITPSGGPDVIYRYNRFRAIQLLGTPAAGYS 833

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A + + ++ K+ + +         T         E    G   V++      +Y   
Sbjct: 834  SGQASSAMEQVAKESLPQGYGYEWTGTTYQEKQAQGNEGAIFGFAAVLVFLFLAALY--- 890

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               W      +  L L +   L    L    +++     ++TLIG +  + +++ +  ++
Sbjct: 891  -ESWSIPFAVLFALPLGMFGALAGVYLRSYPYDIYTQIGIVTLIGLAAKNAILIVEFAKE 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAF 803
                +    S RD   ++ +  L   + TS A  + VLP+ +  G       S    +  
Sbjct: 950  ---SHEHGKSVRDAAIEAAHLRLRPILMTSFAFILGVLPLVLASGASSGARRSLGTAVFS 1006

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++ A   +IFI   + + I     +  
Sbjct: 1007 GMLSATLLAIFIVPVLYVIIESLVERRR 1034



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 92/246 (37%), Gaps = 12/246 (4%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            D      + V A     L  +R    S                    +           
Sbjct: 242 TDPAQFDDIVVRAQPDASLLRIRDIGHSELGAQTYNGFSRLNGKPSANVIVYLSPGANAV 301

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRF--- 688
           +  + V   +  + P    +  + V P  S   +R  I  V+++ + A+ + I + F   
Sbjct: 302 QTADQVIAYMESVKPTFP-KGVDYVVPYNSTMFVRAAIKDVLVTLMEAIGLVILVVFIFL 360

Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L  + T+ + +  T G F L G   N+T++  ++  IG  V+D +VV + +   
Sbjct: 361 QSWRATLIPLLTVPVAVIGTFGLFPLLGFSINITSMFGLVLAIGIVVDDAIVVVEAV--- 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +     +S ++   ++++E     V  +       +P+A  G   G +   FA+ +A  
Sbjct: 418 QRHIDDGLSPKEATSRAMSEVSAPVVAIAFILAAVFIPVAFIGGISGEIYKQFALTIAAS 477

Query: 805 IVVAAS 810
           ++++A 
Sbjct: 478 VLLSAF 483


>gi|254464266|ref|ZP_05077677.1| RND transporter, HAE1 family [Rhodobacterales bacterium Y4I]
 gi|206685174|gb|EDZ45656.1| RND transporter, HAE1 family [Rhodobacterales bacterium Y4I]
          Length = 1041

 Score =  174 bits (439), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 62/525 (11%), Positives = 156/525 (29%), Gaps = 40/525 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  ++  +G++           + +FP   P               + +    
Sbjct: 9   RPKFAIVISLVLTVMGVI-----GYFVLPVAQFPEITPPV-------------VNVTASY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +    G+   S     N    ++++F      +  +  V  
Sbjct: 51  PGANAETVEKSVAAPIEAQVNGVDGMLYMSSNSADNGSYSLSVTFEVGTDPDIASVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L  +   N +VT       ++++          ++  S        D +   
Sbjct: 111 RVAQAVAALPAEVTANGVVTQKSSSNMLLVTALTSPDGTYDSVFLSNYAAINIKDALARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP+++  L  +   +       N        G   +    
Sbjct: 171 AGVGKADILTNFEYAMRVWLDPNKMAGLGISPGDVINAVREQNIEVSAGQVGAPPVPGDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY ++ K  ++             +  +    +     G           +    +  
Sbjct: 231 VFQYTIKSKGRLT-------------EVSEFEDIVIRTGDGGSTVRLSDIARVELGASNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +     E        L           V          
Sbjct: 278 SASGFYDGVPATILAVYQAPGANALAVSEAVLAEMDRLAQDFPADVAYSVPFNTTDFVEQ 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T  +   LV+ V+F+ +   +  ++   +I +++I T A L  LG +L   S+
Sbjct: 338 SLNDVVSTLMMTFVLVISVVFIFLGSFRATVIPAVAIPVSLIGTFAFLLALGMSLNTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    +  + +  L   V 
Sbjct: 398 FALVLAIGIVVDDAIVVVENVERIIAEEGLPPAEATRKAMGQITGPVIATTLVLLAVFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           + F     G     FA+T+ ++++IS   A+++  A+   +++ +
Sbjct: 458 VTFMPGITGKLYSQFAVTISVAVVISSINALTLSPALCAIVLKPR 502



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 78/202 (38%), Gaps = 9/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + ++    E                  ++L   G+V VI++   +  Y+++      W  
Sbjct: 834  DAIRVMQEEAATALPPGYAFEWTGTAQQQLDSAGLVTVILAMAVLFGYLFLVAQYESWSM 893

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  + ++I+ +   +   A+ G + NL     ++ LIG +  + +++ +   +      
Sbjct: 894  PVAILLSVIVALFGAVAAVAIAGNDINLYTQIGMIMLIGLASKNAILIVEFAMEQRAA-- 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA 809
              +S RD   ++  +     + T+++  + V+P+    G+      +  I +  G++ A 
Sbjct: 952  -GLSIRDAAQEAAKQRFRAVMMTALSFLLGVVPLMAASGAGAASQRAIGIAVFGGMLAAT 1010

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
               + +   +   +   R +  
Sbjct: 1011 VVGVIVVPVLYAMMQGVRERIK 1032



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 91/250 (36%), Gaps = 7/250 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS +            S          L   Q    +++A +  +     ++ +  P 
Sbjct: 262 VRLSDIARVELGASNYSASGFYDGVPATILAVYQAPGANALAVSEAVLAEMDRLAQDFPA 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
               +          + +   +  ++++ + ++  ++I    +   +     + + +  T
Sbjct: 322 DVAYSVPFNTTDFVEQSLNDVVSTLMMTFVLVISVVFIFLGSFRATVIPAVAIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             F    G+  N  ++ A++  IG  V+D +VV + +     +    +   +   K++ +
Sbjct: 382 FAFLLALGMSLNTISLFALVLAIGIVVDDAIVVVENV--ERIIAEEGLPPAEATRKAMGQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI-LLFI 823
             G  + T++      +P+    G        FA+ ++  +V+++ +++ ++  +  + +
Sbjct: 440 ITGPVIATTLVLLAVFVPVTFMPGITGKLYSQFAVTISVAVVISSINALTLSPALCAIVL 499

Query: 824 YDWRAKNARI 833
                    +
Sbjct: 500 KPRSGPPKGL 509


>gi|94967177|ref|YP_589225.1| protein-export membrane protein SecD [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549227|gb|ABF39151.1| protein-export membrane protein SecD [Candidatus Koribacter
           versatilis Ellin345]
          Length = 535

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 146/500 (29%), Positives = 249/500 (49%), Gaps = 34/500 (6%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----- 96
           NRI LGLDLRGG+HL+L+V  +D VN       + ++  L    +    + +        
Sbjct: 43  NRIHLGLDLRGGTHLILQVVVNDAVNAETDRAIERIKEDLANNKVTYSDITKPDAANAPE 102

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +I +        +                 +    +    +  E   ++ +    +  + 
Sbjct: 103 RIAIK---GITPDGATTL--------RRVSDERLPEYSFGSGPEGSYTLTMKPAQLKDLK 151

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSH--RILIQLPGEQDPSRLRQLLGTTAKMSF 214
             A++Q+++ IR+R+D +G+SE  IQ  G    +IL+QLPG  DP+R+++++ +TA +  
Sbjct: 152 DRAVQQAIQKIRERVDSLGVSEPVIQEHGLGDYQILVQLPGVDDPARVKEVMQSTAMLEI 211

Query: 215 HKV--------------LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
            +V                       + G           YLV     ++G  L  A   
Sbjct: 212 RQVFGGPYSKESEAAQGQMQQPDTVVLPGKSESDPGTQVFYLVARSSAVAGHDLRQARV- 270

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
              +     V  +    G  RF + T  ++G  L V+LDG+V+    I     S   +I 
Sbjct: 271 GRDQNGGANVQFNLTRDGGVRFSQFTSAHVGDKLGVILDGKVMEVANIKSE-ISDSGEIE 329

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
           G FT + A  LA +L +G+LP  +  +EER VG  LG DSI +G  A + G V +++FM+
Sbjct: 330 GRFTDQQASDLALILNSGALPASIKYLEERTVGPSLGMDSIRQGVRAAIIGFVAVIIFML 389

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           + Y   G+ AD S+ LN+++ L  +   GA LTLP IAG++L +G+ VDSN+L+ ERIRE
Sbjct: 390 IYYKGAGINADLSLLLNLVILLGFMGYFGAVLTLPGIAGVILTVGMGVDSNVLIFERIRE 449

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E R  ++   +++ GF  A+ TI D+++T +++ ++LF FG G V+GFA+T+   +  ++
Sbjct: 450 ELRNGKTPPSAVEQGFGHAWLTIIDTHVTTIVSAIILFLFGTGPVKGFAVTLSFGLFANL 509

Query: 501 FTAISIVRAMMIFIIRYKKM 520
           FTA+ + R +   I+   + 
Sbjct: 510 FTAVFVSRVIFDSILNRHQR 529



 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 105/247 (42%), Gaps = 7/247 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  ++     V       L    +   N   E +    ++ +  D  A    L +    +
Sbjct: 290 VRFSQFTSAHVGDKLGVILDGKVMEVANIKSEISDSGEIEGRFTDQQASDLALILNSGAL 349

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         VGP +  + IR+G+   II  +A++I++ I +K    + A  +L+L
Sbjct: 350 PAS---IKYLEERTVGPSLGMDSIRQGVRAAIIGFVAVIIFMLIYYK-GAGINADLSLLL 405

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           ++   LGF   FG    L  +A V+  +G  V+  V++++R+R+ ++      +    ++
Sbjct: 406 NLVILLGFMGYFGAVLTLPGIAGVILTVGMGVDSNVLIFERIREELR---NGKTPPSAVE 462

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +         + T +   +S + + ++G   +  FA+ ++FG+     +++F++  I   
Sbjct: 463 QGFGHAWLTIIDTHVTTIVSAIILFLFGTGPVKGFAVTLSFGLFANLFTAVFVSRVIFDS 522

Query: 823 IYDWRAK 829
           I +   +
Sbjct: 523 ILNRHQR 529


>gi|167624091|ref|YP_001674385.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354113|gb|ABZ76726.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella halifaxensis HAW-EB4]
          Length = 1044

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 77/678 (11%), Positives = 185/678 (27%), Gaps = 46/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +GL+        Q  +D++P   P               + +    
Sbjct: 8   RPVFASVISIVIVLLGLIAMF-----QLPIDQYPYITPP-------------QVKISASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
               +    +  +  L   L     +   S +   +    IT++F      +  A     
Sbjct: 50  PGATSTTAAESVATPLEQELNGLPNMIYMSSKSTNSGSSNITITFDVGTNPDLAAVDAQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q     L +D +   +  + E  + ++      +      I  S          +   
Sbjct: 110 STQQATGSLPIDVQTEGVSVSKEASVELLKLALTSEDERYDEIYLSNYATINIQSALKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +   +      +    +P  +     TT+ +       N        G +   D+ 
Sbjct: 170 PGVGRVRNTGARSYSMRVWLNPDTMAGYGLTTSDVIDAIKAQNKESPAGSIGSQPNADTL 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S                +    I                NI    +  
Sbjct: 230 SMTLPITAAGRMS-------------SVPQFNEIIVRASADGSIIRLRDIANIELGSSSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L           V          
Sbjct: 277 TLQSQLNGNNATILQVYLLPGANALEVTKKVKAEMAKLAQKFPQGMNWEVFFDASVFIEN 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+FM +   +  L+   ++ +++I TLA +   G T+   S+
Sbjct: 337 SIDEVVKTLVEALILVILVVFMFLQNIRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +    + K  S   +  +        +  +++      V 
Sbjct: 397 LALVLAIGIVVDDAIVVVENVERLMDEKGLSSSQATKVAMKELSGALIATSLVLAAVFVP 456

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G   R FA+ + +++LIS   A+++  A+   +++     +          L
Sbjct: 457 VSFLSGITGIMYREFAVAITVAVLISTVVALTLSPALCALLLKPGDKATSGFFKWMNDRL 516

Query: 534 IPDCIAIQF------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                            A+   +  +++     + +          + +G   + V    
Sbjct: 517 DTATTKYVRLVVLTNKHAKRSYLLFALMVGGVYLTMSSLPSSFMPDEDQGRFFIDVSLPN 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++  +  L+  +   ++              +    +       + +          
Sbjct: 577 GATVNRTQDVLKKAEATVLAHPAIAYSFTLAGENRRSGSNQANGQFEIILKPWSDRVDND 636

Query: 648 LSTIQNTEIVGPKISREL 665
            +  +    +   +   L
Sbjct: 637 ATVQKVMNEIKQSLHDVL 654



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            + +         +  Q        L        +++  T+ ++    K+ +  P     
Sbjct: 265 DIANIELGSSSYTLQSQLNGNNATILQVYLLPGANALEVTKKVKAEMAKLAQKFPQGMNW 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                        I + +  ++ + I +++ +++  +     L     + + +  TL   
Sbjct: 325 EVFFDASVFIENSIDEVVKTLVEALILVILVVFMFLQNIRATLIPAIAVPVSLIGTLAAM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             FG   N  ++ A++  IG  V+D +VV + +     +    +S       ++ E  G 
Sbjct: 385 LAFGFTINTVSLLALVLAIGIVVDDAIVVVENV--ERLMDEKGLSSSQATKVAMKELSGA 442

Query: 772 SVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + TS+      +P+  + G + I    FA+ +   ++++   ++ ++  +   +  
Sbjct: 443 LIATSLVLAAVFVPVSFLSGITGIMYREFAVAITVAVLISTVVALTLSPALCALLLK 499



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 70/165 (42%), Gaps = 9/165 (5%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALG-AITTLILDITKTLGFFALFGIEFNLTAVA 724
             +  + V ++ + + +++   ++ W   +   +   I  +  ++G   + G+E NL    
Sbjct: 866  NQTAIAVTLAMVFVFLFLAALYESWTLPIAVLLIAPIAMLGASVGTL-VSGMESNLFFQV 924

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            A + LIG +  + +++ +      +L+    S  D   ++ N      + TS+A  + VL
Sbjct: 925  AFIALIGMAAKNSILIVEFAN---QLHKAGKSRLDSAIEAANMRFRPILMTSLAFILGVL 981

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            P+      G     S +IP+  G++ A +  I +     +    W
Sbjct: 982  PLVFSVGPGAVSRQSISIPILCGMIFATTIGIIMVPLFFVTTAGW 1026


>gi|152987267|ref|YP_001347009.1| RND efflux transporter [Pseudomonas aeruginosa PA7]
 gi|150962425|gb|ABR84450.1| probable RND efflux transporter [Pseudomonas aeruginosa PA7]
          Length = 1055

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/523 (12%), Positives = 151/523 (28%), Gaps = 36/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              + ++L  ++   G++        Q  L  +P+  P               +      
Sbjct: 10  RPIFAIVLSVLMMIGGIVS-----FFQLPLSEYPAVTPPT-----------VQVTTAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFL 119
              + +   +    ++  + ++               I T++F      +    +V   +
Sbjct: 54  ANPEVIAETVATPLEQAITGVEGMLYMSSQSATDGRLILTITFDQHVDPDMAQIQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V S+L  + ++  +VT       +++      +     +  S     Q  D++     
Sbjct: 114 SRVLSRLPEEVQRQGVVTQKTSPDILMVVHLLSPEKRYDPLYISNYAYLQVRDELLRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               +        +    DP  +     T  ++       N        G      +   
Sbjct: 174 ISDVVVWGAGEYSMRLWLDPDLIAARGLTAGEVIAAVREQNVQVAAGSVGQAP-DSTAAF 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V     ++                +    I       +         I         
Sbjct: 233 QVTVNTLGRLTDEE-------------QFGDIIVRTGADGQVTRLREVARIEMGGDAYAL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +     E      A L           +          S 
Sbjct: 280 RSLLDGEPAVALQIIQSPGANALDVAEAVRGTVARLEGNFPAGISARIAYDPTVFVRASL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV+IV+ + +   +  L+   ++ ++++ T A++ L+G +L   S+ G
Sbjct: 340 QTVATTLLEAILLVVIVVVVFLRSWRASLIPLLAVPVSLVGTFAVMHLMGFSLNTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV--- 476
           +VL IG+ VD  I+V E +       +    +           I           +    
Sbjct: 400 LVLSIGIVVDDAIVVVENVERHIENGEPPLQAARRAMEEVTGPIVAITSVLAAVFIPTAF 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           L    G   R FA+T+ +S ++S   ++++  A+   ++R ++
Sbjct: 460 LSGLQGEFYRQFALTIAISTILSAINSLTLSPALAGLLLRPRQ 502



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 62/166 (37%), Gaps = 6/166 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +  +   +A LI       W   L  +  + + +   +    L G + N+     ++ L
Sbjct: 879  FIFPLCVLLAYLILAAQYNSWLLPLAVLLIVPMCLLSAIAGVWLVGGDNNVFVQIGLVVL 938

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G +  + +++ +  R    L     +  + + ++    L   + TS+A    V+P+ + 
Sbjct: 939  VGLAAKNAILIVEFAR---ALEARGAATLEAVVEACRLRLRPILMTSLAFIAGVVPLVMA 995

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +  +  + +  G++      +F+     + +     +  R
Sbjct: 996  SGAGAEMRQAMGVAVFAGMLGVTLFGLFLTPVFYVLVRALALRLER 1041



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 6/146 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  +L  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + 
Sbjct: 360 FLRSWRASLIPLLAVPVSLVGTFAVMHLMGFSLNTLSLFGLVLSIGIVVDDAIVVVENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMA 802
              +             +++ E  G  V  TS   A FI    ++   G     FA+ +A
Sbjct: 419 --ERHIENGEPPLQAARRAMEEVTGPIVAITSVLAAVFIPTAFLSGLQGEFYRQFALTIA 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRA 828
              +++A +S+ ++  +   +   R 
Sbjct: 477 ISTILSAINSLTLSPALAGLLLRPRQ 502


>gi|330988877|gb|EGH86980.1| multidrug efflux transporter [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 1048

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 69/519 (13%), Positives = 147/519 (28%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTV---------KISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASINLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+       
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVTGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     + Q S   +         S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 498



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 303 GEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 421 VMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 481 LLSVLVAMTLTPAL 494



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 88/266 (33%), Gaps = 13/266 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +    +  V  S    +  S     +   N +     +           
Sbjct: 778  RMQSADLNHWFVRNSNDEMVPFSSFARSSWSYGSPLLERYNGNSSLEVVGDPAPGVSSGT 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  ++K+    I    T Q+ ++        ++        +S + + + +   ++
Sbjct: 838  AMDAVETIIKQLPEGIGYEWTGQSYQLRLSGSQAPMLY------AVSVLFVFLCLAALYE 891

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  + L +   +    L G+  ++     +LT +G +  + +++ +  +   
Sbjct: 892  SWSVPFSVMLVVPLGVVGAVLATRLSGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK--- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S  +    +  + L   + TS+A    VLP+A+    G +   +    +  G+
Sbjct: 949  HLQEQGKSLHEATLLAARQRLRPILMTSLAFMFGVLPLALSTGAGSAGRNAIGTGVLGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A    IF+     + +    +++A
Sbjct: 1009 FSATVLGIFLVPLFFVEVRRRFSRSA 1034


>gi|148557997|ref|YP_001257358.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ovis ATCC
           25840]
 gi|148369282|gb|ABQ62154.1| hydrophobe/amphiphile efflux-1 family protein [Brucella ovis ATCC
           25840]
          Length = 1074

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEATIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLALTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 74/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +        S  +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIISARQRFRPVMMTSFAFILGLVPLVIVVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|116253515|ref|YP_769353.1| AcrB/D/F RND family transporter [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258163|emb|CAK09264.1| putative transmembrane AcrB/D/F RND family transporter [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1066

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 147/544 (27%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P  +P + +                  
Sbjct: 10  RPVFAGVLSVLILVAGLI-----GLRALPISEYPEVVPPSIV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PSVIAETVATPLEEQINGVEGMLYMASQATSDGVLNVTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T       I++     D                  D++       
Sbjct: 116 AEPRLPAEVRSLGITTVKSSPNFIMVVNLVSDGNNHDITYLRNYATLNVKDRLARIAGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +     + +S      N      + G    +     Q 
Sbjct: 176 QVQVFGAGDYSMRVWIDPQKAAEHNLAASDISSAISSQNIQAAAGIIGASPSQPGVDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    A      
Sbjct: 236 NVNAQGRL-------------RTPEEFGNIIVKTGANGEITRLRDVARIELGAADYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 283 LLDGKPAVAVAVLQAPGSNAIEIADNVNATMDQLQLAMPEGVKYEIVYDTTKFVRASIEK 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G ++   S+ G+V
Sbjct: 343 VIDTLLEAIALVVLVVILFLQTWRASIIPLIAVPVSIIGTFAVMYVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEEGLSPRAATYKAMREVSGPIVAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S +IS F ++++  A+   +++        +             
Sbjct: 463 GLSGQFYRQFALTIAISTVISAFNSLTLSPALAALLLKSHDQPKDWLTRFMDAIFGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 GFNR 526



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAIIMIVPMGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     + R+   ++    L   + TS+A  + V+P+ V    G  +  +  + +  G+
Sbjct: 960  -LEFEGRTPREAAIEASRLRLRPILMTSLAFIMGVVPLVVSTGAGAEMRAAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      IF+     + +  
Sbjct: 1019 IGVTFFGIFMTPVFYVLLRR 1038



 Score = 45.8 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N++   
Sbjct: 371 PL---IAVPVSIIGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEE-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R    K++ E  G  V  ++      +P+A      G     FA+ +A   V++A
Sbjct: 426 -GLSPRAATYKAMREVSGPIVAIALVLVAVFVPLAFISGLSGQFYRQFALTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 FNS 487


>gi|209966989|ref|YP_002299904.1| acriflavine resistance protein B [Rhodospirillum centenum SW]
 gi|209960455|gb|ACJ01092.1| acriflavine resistance protein B [Rhodospirillum centenum SW]
          Length = 1044

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/571 (12%), Positives = 158/571 (27%), Gaps = 41/571 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +GL+      LPQ  + R+PS  P               + +    
Sbjct: 8   RPVFAWVVALFIILLGLIA-----LPQLPIARYPSVAPPT-------------VSIYASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L            +      ++T++F      E     V  
Sbjct: 50  PGAAPQTMNDSVLGLIERELSGVKNLLYFESSADTSGTAQVTVTFKPGTDPEMAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ +  +L    ++N L   +     ++L     +         S  + R  I+++   
Sbjct: 110 RLKAIEPRLPQAVRQNGLTVESADSGFLMLVSLRSEDGRFDETTLSDYLARNIIEELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          L    DP RL     T A +S      N        G        
Sbjct: 170 DGVGRVQLFGA-EQALRIWVDPLRLVSFGLTMADLSAAITQQNTQIAPGRVGDAPTIPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++                 +    +        +        +       
Sbjct: 229 RVSIPLTVQGQL-------------QTPEEFAAIVLHANADGSKVTLGDVARVELGAQTY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                        A        +   T E+     A L                      
Sbjct: 276 SFANRENGQAAAVAAVQLSPGANAVRTAESVKTRLAELSRVMPAGVTYTTPFDTAPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+ + +   ++ L+      + ++ T A++ + G ++ + ++
Sbjct: 336 SIEKVIQTLVEAMVLVFLVMLLFLQNIRYTLIPAIVAPIALLGTFAVMLVAGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERLMASEGLSPKDATVKAMKEITGAVIAITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +   G       R F ++M +SIL S F A+S+  A+   +++              +F 
Sbjct: 456 MALAGSSVGVIYRQFTLSMAVSILFSAFLALSLTPALCATLLKPVDPGHHARGGFFGWFN 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLL 564
                  +    R   +       + +  ++
Sbjct: 516 RRFDHLTRSYETRVAALVRRTGRMMAAFAVI 546



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 9/143 (6%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           IR+    A+ A   L      T     + G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 362 IRYTLIPAIVAPIAL----LGTFAVMLVAGFSINVLTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               + +  +S +D   K++ E  G  +  ++      +PMA+ G   G +   F + MA
Sbjct: 417 -ERLMASEGLSPKDATVKAMKEITGAVIAITLVLTAVFIPMALAGSSVGVIYRQFTLSMA 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I+ +A  ++ +   +   +  
Sbjct: 476 VSILFSAFLALSLTPALCATLLK 498



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 60/146 (41%), Gaps = 7/146 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L +   +    L G+  ++     +
Sbjct: 865  QAPLLMALSMLVVFLVLAALYESWSIPLSVMLAVPLGLLGAVAAVMLRGMPNDIFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  R   +L+       D    +    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAR---QLHAEGKELLDAAVTAARLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAA 809
             +  G       +    +  GI+ A 
Sbjct: 982  MLAQGASAETQNAIGTGVFGGILCAT 1007


>gi|325130755|gb|EGC53491.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis OX99.30304]
          Length = 1067

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 159/570 (27%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 102/291 (35%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    +++       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|332530604|ref|ZP_08406538.1| cation/multidrug efflux pump protein [Hylemonella gracilis ATCC
           19624]
 gi|332039941|gb|EGI76333.1| cation/multidrug efflux pump protein [Hylemonella gracilis ATCC
           19624]
          Length = 1039

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 79/665 (11%), Positives = 182/665 (27%), Gaps = 32/665 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G          +  L+++P   P              +       
Sbjct: 8   RPIFAWVIAIVIMLAGGFSI-----NRMSLEQYPDIAPVRI---------SVNASYTGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++    L        S     + + L+F      +    +V   +Q  
Sbjct: 54  AQTIEDSVTQVIEQQMKGLDGLQNMAASSSAGSSTVVLNFVAGTDADVAQMQVQNKVQQA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +   +  T      +++     + V   + + +  +     DQ    +    
Sbjct: 114 LSRLPQAVQSMGVTVTKSGTDFLMVITLVSEDVSVTSADIADYVSSTLSDQFARIDGVGD 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
             G       +    DP++L Q     + +S      N        G             
Sbjct: 174 VTGMGS-SYAMRIWLDPNKLAQYALMPSDVSGAIESQNTQVAVGQLGALPAVADQALNAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  + ++                 +    I   +             +            
Sbjct: 233 ITARSKL-------------RTVEQFQEIILKYDAKGAVVKLSDVARVELGSQSYTVNTT 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +     E      A L  G       +V          S    
Sbjct: 280 FNGKPSAGMGIKLATGANALGVAEAVKTKLAQLEPGFPMRLKAVVAYDTTPFVRISIKEV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T A    LV++V+ + +   +   +   ++ + ++ T+ +L+  G ++   ++ G+VL
Sbjct: 340 LITLAEAMVLVVLVMGLFMQSLRATFIPAIAVPVVLLGTVGVLAAAGYSINTLTMFGLVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IGL VD  I+V E +      +  S   +           +   ++      + + FF 
Sbjct: 400 AIGLLVDDAIVVVENVERLMREEGLSPREATRKSMGEITGALVGISLVLSAVFIPMAFFS 459

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+IT+  ++ +S+  A+++  A+   ++R      +               
Sbjct: 460 GSTGVIYRQFSITIVSAMALSVLVALTLTPALCATLLRPHGAIDLAGGRFGFMRRFFGAF 519

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
             QF R      G         + ++  +G+       G ++L        D  V+ + +
Sbjct: 520 NRQFERRTTQYQGWVQYLLSRGLRVMIVYGVLAVALVIGFLRLPTSFLPDEDQGVLMAMV 579

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           +       +      +       Q     S    R L   +      + L      E  G
Sbjct: 580 QLPSGATDARTVAVLKDVQDYLRQQPEVKSYLSIRGLNGDQASANFFLMLKDWSEREKPG 639

Query: 659 PKISR 663
              + 
Sbjct: 640 QSAAE 644



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q   ++          +        +++     ++    ++    P+
Sbjct: 259 VKLSDVARVELGSQSYTVNTTFNGKPSAGMGIKLATGANALGVAEAVKTKLAQLEPGFPM 318

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                         R  I++ ++ +  + + +++ + +              + + +  T
Sbjct: 319 RLKAVVAYDTTPFVRISIKEVLITLAEAMVLVVLVMGLFMQSLRATFIPAIAVPVVLLGT 378

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  A  G   N   +  ++  IG  V+D +VV + +     +    +S R+   KS+ E
Sbjct: 379 VGVLAAAGYSINTLTMFGLVLAIGLLVDDAIVVVENV--ERLMREEGLSPREATRKSMGE 436

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  S+      +PMA + GS       F+I +   + ++   ++ +   +   + 
Sbjct: 437 ITGALVGISLVLSAVFIPMAFFSGSTGVIYRQFSITIVSAMALSVLVALTLTPALCATLL 496

Query: 825 D 825
            
Sbjct: 497 R 497



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 79/261 (30%), Gaps = 11/261 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                     G  Q+       V LS   S   +     +   N       +         
Sbjct: 775  PFRMQPQDIGRWQVRGGNGDMVPLSAFTSITWTSGPQKLERYNGFSAMEIVGSPAPGVSS 834

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   V ++V K    I      Q+ +              +  V I  +  L    + 
Sbjct: 835  GAAMVAVEDIVAKLPQGITYEWAGQSYQERLSGSQAP----ALYAVSILFVF-LCLAALY 889

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +  + L +   +G   L G+  ++     +LT +G S  + +++ +     
Sbjct: 890  ESWSVPFSVMLVVPLGLIGAVGATWLAGLNNDVYFQIGLLTTVGLSAKNAILIVEFA--- 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
             +L          + +++   L   + TS+A    VLP+A+    G     +    +  G
Sbjct: 947  QQLVDQGQGVMRAVLQAVKLRLRPILMTSLAFIFGVLPLALASGAGAGSRQAIGTGVVGG 1006

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++ A    +F      + +  
Sbjct: 1007 MLSATVLGVFFIPVFYVVVRR 1027


>gi|198243203|ref|YP_002214303.1| hypothetical protein SeD_A0382 [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937719|gb|ACH75052.1| OqxB [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|326622049|gb|EGE28394.1| OqxB [Salmonella enterica subsp. enterica serovar Dublin str. 3246]
          Length = 1055

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDIARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTFTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSTVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHEGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|332526779|ref|ZP_08402881.1| acriflavin resistance protein [Rubrivivax benzoatilyticus JA2]
 gi|332111182|gb|EGJ11214.1| acriflavin resistance protein [Rubrivivax benzoatilyticus JA2]
          Length = 1073

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/523 (12%), Positives = 151/523 (28%), Gaps = 38/523 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  +  ++   +C +G+         +  +++ P                   +     
Sbjct: 9   RNPVFATMVMVALCVLGVFS-----YMRLGVEQMPDIALPGAY---------VEVSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E  + +           + +++ ++ F            V   +  
Sbjct: 55  SPEAVEREITKPLEESVNGIAGVKRLTSRSFEGRSQTSIEFTLDTDMGRAMQDVRDRVAA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++   D K  L+     +    V+    +        E S+   +    ++   +   
Sbjct: 115 AQARFPDDAKPPLINRFDNENSQPVV-ALALLSDTRSQRELSIIADQVVSRRLQRVDGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S   L ++  + DP RLR    T A+++      N  +   +            + 
Sbjct: 174 RVDVSGLALREVRIDLDPERLRAYAVTPAEVAKALDEANADEPVGLLSNERADAILRVEG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V D  E     +                                   + +         
Sbjct: 234 RVRDPREFENTIVA--------------------HRNGLPLRLGDLGRLVEREREPDSFA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +   T E        L     P     +         GS   
Sbjct: 274 RLNGRTAINFNVFKQQDANIVATGEKVKEAMDELGRTLPPDTQIELVYAASDWVKGSLVG 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A L + ++F+ +   +  ++   ++ + VI +   +   G TL   ++  + 
Sbjct: 334 LRHTLIEGALLTVAIVFLFLHSWRSTVITGLTLPIAVISSFIAVHAFGFTLNFMTMMALS 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +  + + D G       +  +        V + F G
Sbjct: 394 LCIGLLIDDAIVVRENIVRHVHMGKDHYTAADEGTREIGLAVMATTFAICAVFVPVAFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G     F IT+ +++L+S+F + ++   +          +
Sbjct: 454 GIIGKFFYPFGITVVVAVLVSLFVSFTLDPMLSSVWRDPPSAR 496



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 56/157 (35%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + I       W   +    TL + +  +      FG   N   + A+   IG 
Sbjct: 339 IEGALLTVAIVFLFLHSWRSTVITGLTLPIAVISSFIAVHAFGFTLNFMTMMALSLCIGL 398

Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+  +           D+   E     + T+ A     +P+A  GG
Sbjct: 399 LIDDAIVV----RENIVRHVHMGKDHYTAADEGTREIGLAVMATTFAICAVFVPVAFMGG 454

Query: 792 SVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      F I +   ++V+   S  +   +     D
Sbjct: 455 IIGKFFYPFGITVVVAVLVSLFVSFTLDPMLSSVWRD 491



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 66/180 (36%), Gaps = 7/180 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
             V   V+K I E               K   E     +  + ++ I + I +  +F  + 
Sbjct: 854  DVGADVQKLIAETSLPPGFTFDVGGQTKDQNEAFTAMLGAMALAVIFIYIVLASQFGSFV 913

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  + +L L +   +    + G   N+ ++  ++ L+G    + +++ D         
Sbjct: 914  QPVAIMASLPLSLIGVMIALLVSGSTLNVFSMIGLVMLMGLVTKNAILLVDFAN---HAR 970

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                S  + + ++    +   V T+ A    +LP+A+    GG +       +  G++ +
Sbjct: 971  RDGASVPEALLQAGLTRMRPIVMTTAAMVFGMLPLAMALNDGGEIQAPMGRAIIGGVITS 1030


>gi|326798543|ref|YP_004316362.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
 gi|326549307|gb|ADZ77692.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
          Length = 1524

 Score =  174 bits (439), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 68/559 (12%), Positives = 157/559 (28%), Gaps = 33/559 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++   I      +     L    + +FP  +P + +          +      
Sbjct: 7   KRPVLSLVISLFIT-----LLGLLSLFTLPVTQFPDIVPPSVV---------VNANYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQ 120
             +     + +  ++  + +              N  I + F      +  A  V   + 
Sbjct: 53  NAEVSTNAVAIPLEKAINGVPGMTYMSSVSTNNGNTLIQVYFEVGTDPDIAAVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  K  + T  E    ++      D   +             + ++   +  
Sbjct: 113 TVLDELPEEVIKAGVTTEKEVNSMLMYLNIYSDDETADERFIYNFTDINILKELKRIQGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +     P RL     ++  +       N        G+   +  +  Q
Sbjct: 173 GRAEIMGFKDYAMRVWLKPDRLTAYRVSSEDVIKAIRAQNVEAAPGQTGIGSDKSVNMQQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y++                    +  +                     ++          
Sbjct: 233 YVL-------------RYPGKFDRPEQYENIPLRANPDGSILRLRDVADVEFGSLEYEMA 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSD 359
                      +       + +  I+        L+     P     +          S 
Sbjct: 280 SKADGRPSASIMIKQLPGSNASEVIDAIKAKMEELKGTTFPPGMKYAMGYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +    T      LV +V+F+ +   +  LV   ++ + +I  L  + +LG ++ L ++  
Sbjct: 340 NEVLHTLVEAFILVFLVVFIFLQDFRSTLVPALAVPVCLIGALFCMQMLGFSINLLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC----SLDMGFSRAYSTIFDSNITALIATV 475
           +VL IG+ VD+ I+V E +  +  +          +     S A   I        +   
Sbjct: 400 LVLAIGIVVDNAIVVVEAVYVKMEEEHMQPMEATLAAMREISGAIIAITLVMSAVFVPVA 459

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            L    G   R F++T+  SILIS   A+++  A+   I+R    +      L+ FF   
Sbjct: 460 FLSGPVGVFYRQFSLTLAGSILISGINALTLTPALCAIILRSPHDRPEPRGALATFFRKF 519

Query: 536 DCIAIQFMRARFWGVGISI 554
           + +           +    
Sbjct: 520 NSVYNSISGRYAGLISRIA 538



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 91/254 (35%), Gaps = 10/254 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
             +    + + AN    +  +R   +              +      +  +       + 
Sbjct: 243 RPEQYENIPLRANPDGSILRLRDVADVEFGSLEYEMASKADGRPSASIMIKQLPGSNASE 302

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRF- 688
           V++ +K K+ E+   +     +          +   I      ++ + I + + ++I   
Sbjct: 303 VIDAIKAKMEELKGTTFPPGMKYAMGYDVSRFLDASINEVLHTLVEAFILVFLVVFIFLQ 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + +   L    + G   NL  + A++  IG  V++ +VV + +   +
Sbjct: 363 DFRSTLVPALAVPVCLIGALFCMQMLGFSINLLTLFALVLAIGIVVDNAIVVVEAV--YV 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           K+    +   +    ++ E  G  +  ++      +P+A   G V      F++ +A  I
Sbjct: 421 KMEEEHMQPMEATLAAMREISGAIIAITLVMSAVFVPVAFLSGPVGVFYRQFSLTLAGSI 480

Query: 806 VVAASSSIFIAAPI 819
           +++  +++ +   +
Sbjct: 481 LISGINALTLTPAL 494



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 51/138 (36%), Gaps = 6/138 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  I +L   +     F  L G+E N+ A  A++ LIG    + +++   +   +
Sbjct: 895  SFLLPLPVILSLPAGVFGAFLFLKLLGLENNIYAQVALIMLIGLLGKNAILI---IEYAI 951

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGI 805
              +    S  +   +     L   + TS A    ++P+    G   +   S       G+
Sbjct: 952  LKHKQGASILNAAIEGSVARLRPILMTSFAFVAGLIPLAMASGAGALGNRSIGTTAIGGM 1011

Query: 806  VVAASSSIFIAAPILLFI 823
            ++   + + +   + +  
Sbjct: 1012 IIGTLAGVIVIPGLYVLF 1029


>gi|325128746|gb|EGC51609.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis N1568]
 gi|325138699|gb|EGC61251.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis ES14902]
 gi|325198808|gb|ADY94264.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis G2136]
          Length = 1067

 Score =  173 bits (438), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 159/570 (27%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 101/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|209527792|ref|ZP_03276285.1| acriflavin resistance protein [Arthrospira maxima CS-328]
 gi|209491779|gb|EDZ92141.1| acriflavin resistance protein [Arthrospira maxima CS-328]
          Length = 1051

 Score =  173 bits (438), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 71/605 (11%), Positives = 170/605 (28%), Gaps = 31/605 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ ++  +G++        Q  +D  P+                  +     
Sbjct: 14  RQPVPTLVLFLILTLVGVMS-----FFQLGIDDTPNIDIPAVT---------VTVTQPGA 59

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + L        ++R   +  T+SF      +   + V   +  
Sbjct: 60  GPNELENQVTKPVEDAIAGLGNIDQLTSTVRDGVSTTTVSFVLGTDSDRATNDVRNAIAQ 119

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    ++        SI+              E S  + R     +       
Sbjct: 120 IRQSLPQDINDPIVQRLRFAGGSIMTYAVTSP--TRSVEELSDLVDRNISRALLNVPGVA 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++  E  P R++ L  TT +++      N +  G                
Sbjct: 178 QIQRIGGVDREICIELHPDRIQGLGLTTTQVNDQIRAFNINLPGGRS----------QVG 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E  +   G           P        +    +G           + K     LD  
Sbjct: 228 GSEKSIRTLGSAQTVEALRDYPIILPNGNSVPLSSIGTVTDGLAEVRQVAKFADFPLDSN 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +     +        L+          +      +   S   
Sbjct: 288 SQMGTPVVAFSVLRSTGSTLVSVEQGIRNRVVDLQKTLPEDINLELIVTRANSIRESYQA 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I + L ++V+ + +   +  L+   ++ L+++ T  ++ +   TL   ++  + 
Sbjct: 348 SVDALVIGSILTVVVVGIFLRNWRPTLITAIALPLSILPTFLVMRMFDYTLNGMTLLALA 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I + E I +     +  F +           +  +  T +   + + F G
Sbjct: 408 LAMGNLVDDAICMMENIDQHVEMGKPPFKAAIDASREIGLAVVATTATIVAVFLPVAFMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFFLIPDC 537
              G   + F +T+  S + S   A ++   +    + +       D N   R F     
Sbjct: 468 GVPGQFFQPFGVTVATSTMFSTLVACTMTPLLGARLLQQKSTPPKTDTNHTRRRFSPYRS 527

Query: 538 IAIQFMRARFWG-VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
           +    +R R    +     F      +       +     G   + +       L+ +++
Sbjct: 528 LLGWSLRHRITTLLLAIAFFVASLQLVPLIPRGLFNSGDTGLSTISLELPPGSTLAELQT 587

Query: 597 NLESL 601
             +  
Sbjct: 588 TTQEA 592



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 55/410 (13%), Positives = 119/410 (29%), Gaps = 9/410 (2%)

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            +    VLG      +N + N   +      Q +   +      A  +I    +T+   +
Sbjct: 95  TTTVSFVLGTDSDRATNDVRNAIAQIRQSLPQDINDPIVQRLRFAGGSIMTYAVTSPTRS 154

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           V             A+      +  +     + R + I +   +              + 
Sbjct: 155 VEELSDLVDRNISRALLNVPG-VAQIQRIGGVDREICIELHPDRIQGLGLTTTQVNDQIR 213

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              I +   R++  G   SI     +  +         +     + L  +      L+ V
Sbjct: 214 AFNINLPGGRSQVGGSEKSIRTLGSAQTVEALRDYPIILPNGNSVPLSSIGTVTDGLAEV 273

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R   +       S             L+      V+  + +      + + +P       
Sbjct: 274 RQVAKFADFPLDSNSQMGTPVVAFSVLRSTGSTLVSVEQGIRNRVVDLQKTLPEDINLEL 333

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            +      RE  +  +  ++I +I  ++ + I  + W   L     L L I  T     +
Sbjct: 334 IVTRANSIRESYQASVDALVIGSILTVVVVGIFLRNWRPTLITAIALPLSILPTFLVMRM 393

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F    N   + A+   +G  V+D + + + +    +              +  E     V
Sbjct: 394 FDYTLNGMTLLALALAMGNLVDDAICMMENI---DQHVEMGKPPFKAAIDASREIGLAVV 450

Query: 774 YTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
            T+       LP+A  GG        F + +A   + +   +     P+L
Sbjct: 451 ATTATIVAVFLPVAFMGGVPGQFFQPFGVTVATSTMFSTLVA-CTMTPLL 499



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 69/173 (39%), Gaps = 8/173 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGF 710
            Q       +I  ++  + +  + ++ + +  I + +   +   +  +  L L +   L  
Sbjct: 847  QQQSEGDARIMIDVFTRFLSALGLAVLGIYAILVLLYNNFIIPVTILMALPLSLGGALLA 906

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              +   E  L A+  ++ L+G    + +++ D    +M      +S  + + ++    L 
Sbjct: 907  LMITQKELGLFALIGIVLLMGLVTKNAILLVDC---SMANQQMGMSRFNAVLEAGCSRLR 963

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              + T+ +    +LP+A+    G  V    AI +  G+  +   ++ I  P+ 
Sbjct: 964  PILMTTFSTIAGMLPIALEWGAGSQVRSPMAIAVIGGMTTSTLLTL-IVVPVW 1015


>gi|168819055|ref|ZP_02831055.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205344038|gb|EDZ30802.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320084623|emb|CBY94414.1| Antibiotic efflux pump membrane transporter arpB [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 1055

 Score =  173 bits (438), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQRNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTFTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|298374266|ref|ZP_06984224.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 3_1_19]
 gi|298268634|gb|EFI10289.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 3_1_19]
          Length = 1011

 Score =  173 bits (438), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 76/605 (12%), Positives = 172/605 (28%), Gaps = 44/605 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G +           +  FPS                 ++      
Sbjct: 11  RPVLSTVMMLVILLFGFI-----GYRFLGVREFPSVDQPII---------SVNVSYPGAN 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    ++  + +           Q  ++IT+ F  S   E  A+ V   +   
Sbjct: 57  ADVIMNQITEPLEQNINGIPGIRSLSSVSSQGSSRITVEFELSVDMETAANDVRDKVSRA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D     +         I+      +      +E S        +++   E+   
Sbjct: 117 QRYLPRDCDPPTVSKADADASPIMQIAIRSN--KRSLMELSEIAELTVKERLQTIENVSG 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +    +    DP ++     T   +       N            +  S     L
Sbjct: 175 VDIWGQKRYSMRLWLDPIKMAGYGVTPMDVKNAVDNENVELPSGSIEGNTISLSIRTLGL 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                 T K   D+   E                    +     
Sbjct: 235 --------------------MHTAKEFNDLIIKEDNNNIVRFSDVGRAEVAPEDLRSLLK 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   +   +     + A      L+          +   N      S    
Sbjct: 275 KNGEPMVMTVIIPQPGANHIEIADEAYKRIEQLQKDLPEDVTIEMMYDNTRFIRASIGEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      LV++++F+ +   +  LV    I ++++    ++ + G ++ + ++  +VL
Sbjct: 335 QQTIYEAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYISGFSVNVLTMLAVVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL VD  I+V E I     +  S   +   G    +  +  + IT +   + + F  G
Sbjct: 395 SVGLVVDDAIVVAENIYVRIEQGMSPKEAGIEGSKEIFFAVVSTTITLISVFLPIVFMEG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 + F+I +  S+ IS F A++    +   +++ ++ K+        FF   + I 
Sbjct: 455 MTGRLFKEFSIVIAGSVAISSFVALTFTPMLATKLLKRREKKNWFYRKTEPFFEGLNTIY 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNY-----GIDFKGGIQLGVLANRPVDLSVV 594
            + + A       SI   I     +     N       ++ +  I + +          +
Sbjct: 515 AKSLNAFLNHKIWSIPIVILLFGSIGYFWKNIRSELSPLEDRSMISVNMRGPEGATFEFI 574

Query: 595 RSNLE 599
           R   +
Sbjct: 575 RDYAD 579



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 74/165 (44%), Gaps = 7/165 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  +I++ + + + +  +F+ +   L  + T+ L I   L F +  GI  N+ +   ++ 
Sbjct: 847  MFAMILALLMIYLVLAAQFESFKDPLVVMFTVPLAIAGALMFMSYSGITMNIFSQIGIIM 906

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +   + +S  + I  S  + L   + TS++  + ++P+  
Sbjct: 907  LIGLVAKNGILIVEFAN---QRQESGLSLPEAIRSSATQRLRPILMTSVSTILGLVPLVY 963

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              G          + +  G++V+   ++FI   +  FI   R KN
Sbjct: 964  ATGEGAQGRIAMGVAVVGGMLVSTFLTLFIVPAMYSFISTNRKKN 1008



 Score = 81.7 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 84/246 (34%), Gaps = 15/246 (6%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V    +RS L+      +            + +           + +E ++K + E V +
Sbjct: 264 VAPEDLRSLLKKNGEPMVMTVIIPQPGANHIEIA------DEAYKRIEQLQKDLPEDVTI 317

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + +          E+ +      ++  + + +++     W   L  +  + + +    
Sbjct: 318 EMMYDNTRFIRASIGEVQQTIYEAFLLVVLIIFLFL---RDWRVTLVPVVVIPVSLVGAF 374

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               + G   N+  + AV+  +G  V+D +VV + +          +S ++   +   E 
Sbjct: 375 FVMYISGFSVNVLTMLAVVLSVGLVVDDAIVVAENI---YVRIEQGMSPKEAGIEGSKEI 431

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               V T++      LP+    G        F+I +A  + +++  ++     +   +  
Sbjct: 432 FFAVVSTTITLISVFLPIVFMEGMTGRLFKEFSIVIAGSVAISSFVALTFTPMLATKLLK 491

Query: 826 WRAKNA 831
            R K  
Sbjct: 492 RREKKN 497


>gi|114763046|ref|ZP_01442476.1| probable multidrug efflux transporter protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114544370|gb|EAU47378.1| probable multidrug efflux transporter protein [Roseovarius sp.
           HTCC2601]
          Length = 1037

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 71/573 (12%), Positives = 161/573 (28%), Gaps = 32/573 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  M    G    L        + ++P   P                     
Sbjct: 7   RRPVFAWVLALMTMLAGAWSFL-----SLPVSQYPDIAPTTVR---------VSASYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + L+          Q    ++L+F DS    +  ++V   +  
Sbjct: 53  TAEAVENSVTRVIEDSMTGLEGMIYMTARSSQGSASLSLTFDDSVDPIDAQNEVQTKVSQ 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    +   +         +++            +E    +       I  ++   
Sbjct: 113 VESQLPSAVQSQGVSIRRSTSSILMVGALVSTDGAHSTLELGDILSETVEGPIQRTDGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P  L +   T + +       N +      G +          
Sbjct: 173 GINVFGSG-YAMRIWLKPLALARYQLTPSDVVAAVQNQNTTVSVGSLGEQPTVQGQQFTA 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++G+              +    +   E            ++           
Sbjct: 232 TITAQSQLTGVE-------------QFERILLKTEEDGGAVRLADVADVEIGQESYGGDS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +   T        A L           +          S   
Sbjct: 279 RFNGLNAAGFGVNLETGANAVDTANAVKATMARLENTLPEGVAFRISYDTSPFVELSIEQ 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +VL + +   +  L+   ++ + +  T A+L   G T+   ++  +V
Sbjct: 339 VYHTLIEAVVLVFLVLIVFLQSWRATLIPLIAVPVVLSGTFAVLYATGFTINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    + +  S   +      +  S +   N+      + + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERIMDEEGLSAREATKKSMGQITSALLGINVVLAAVFLPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+ITM  ++ +S+  AI +   M   ++R +               +   
Sbjct: 459 GGSTGVIYRQFSITMVTAMTLSLLVAIILSPPMSAKLLRPRDEMIRFAPARWFNRSLDRV 518

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
                   +      +++  + ++ L     +N
Sbjct: 519 TDAYGGGVKASLRAPAVMLGLLALVLGGAWWVN 551



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/147 (20%), Positives = 61/147 (41%), Gaps = 5/147 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + ++ T       G   N   + A++  IG  V+D +VV + +    
Sbjct: 360 SWRATLIPLIAVPVVLSGTFAVLYATGFTINTLTMFAMVLAIGLLVDDAIVVVENV--ER 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S R+   KS+ +     +  ++      LPMA +GGS       F+I M   +
Sbjct: 418 IMDEEGLSAREATKKSMGQITSALLGINVVLAAVFLPMAFFGGSTGVIYRQFSITMVTAM 477

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++   +I ++ P+   +   R +  R
Sbjct: 478 TLSLLVAIILSPPMSAKLLRPRDEMIR 504



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/228 (10%), Positives = 68/228 (29%), Gaps = 9/228 (3%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
               +    S Q + G     +      G S               +    S         
Sbjct: 802  TDWEPVAPSLQRYGGTAALEISGSAANGVSSGAAMDAMEEMVASLDGGYGSAWTGISYQE 861

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             +   +      +    + +  L    +   W      +  + + +   L     FG   
Sbjct: 862  RQSGDQAPYLYAIS---ALVIFLALAALYESWSIPFSVMLAVPVGVLGALLAAWAFGQSN 918

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++     +LT IG +  + +++ +   + ++      S  +   ++    L   + T++ 
Sbjct: 919  DVYFKVGMLTTIGLAARNAILIVE-FAEELR--REGRSITEAAVEAARLRLRPILMTALT 975

Query: 779  AFISVLPM---AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              + V+P+   +  G +   +    +  G++ +    IF+       I
Sbjct: 976  FILGVVPLATASGAGAAAQNAIGTGVIGGMIASTFVGIFLVPAFYALI 1023


>gi|330888478|gb|EGH21139.1| multidrug/solvent transporter [Pseudomonas syringae pv. mori str.
           301020]
          Length = 410

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 47/431 (10%), Positives = 113/431 (26%), Gaps = 29/431 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLAPGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNI 432
           L IGL VD  I
Sbjct: 400 LAIGLLVDDAI 410



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 1/153 (0%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLAPGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            T G  A FG   N   +  ++  IG  V+D +
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAI 410


>gi|254670147|emb|CBA05171.1| putative efflux system transmembrane protein [Neisseria
           meningitidis alpha153]
          Length = 1067

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 156/574 (27%), Gaps = 48/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS                  + L    
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-------------ITLRATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   +       ++L+F     +     +V  
Sbjct: 50  PGASAQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   
Sbjct: 110 KLSEVLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q          +    DP +L+    + A +       N        G        
Sbjct: 168 EGVGQVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  + ++                 +    I          +      +G  +   
Sbjct: 227 TVTATVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +      A L                      
Sbjct: 274 SSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEI 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++
Sbjct: 334 SIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    +       +   V 
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVP 453

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L  F    G   + FA+TM  SI  S F A+++  A+         +K+I          
Sbjct: 454 LAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKG 508

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                  +F        G        +  ++  +
Sbjct: 509 FFGWFNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 102/291 (35%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    +++       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|116073844|ref|ZP_01471106.1| Hydrophobe/amphiphile efflux-1 HAE1 [Synechococcus sp. RS9916]
 gi|116069149|gb|EAU74901.1| Hydrophobe/amphiphile efflux-1 HAE1 [Synechococcus sp. RS9916]
          Length = 1136

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 73/525 (13%), Positives = 148/525 (28%), Gaps = 33/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I  +GL+       P   ++  P   P                     +
Sbjct: 10  RPVLSTVCSLLIVIVGLIAI-----PILPIENLPDIAPPTVK---------VQATYVGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +++      +      + I++SF            V   +  
Sbjct: 56  AVSVEQGVTSVLEQQINGVEEMDFITSNSSADGVSSISVSFNSGTDGNINQVNVQNRVSL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE---QSMEIIRQRIDQIGISE 178
              +L  + +K  +         +++           A      S  + +   D I    
Sbjct: 116 AEPQLPEEVRKAGVTVNKASNSILLVYNFVNSDPSKTAYSVETISGYLDKNLTDNIKRVP 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +        +      DP +L     T+  +       N        G     D   
Sbjct: 176 GVGEVTYFGNRKVAFRLWLDPDKLAANGLTSTDVVNQLKSQNRLVPAGKVGGPPSPDGQE 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + V+ +  ++                   + +   + G                   +
Sbjct: 236 FTFTVQLQGRLTTEEEF------------ANIVLRTTDDGGLIRLRDVGRVSLGGETYGI 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D   L             +  +     +    + A           + V          S
Sbjct: 284 DAMDLQGTPSVGVAVYQLSGSNAIQVSDGVKDVIAEFERTLPVGLESQVIYDTTDFINQS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 +      LV+++LF+ +   K  LV   +I + +I T AL+   G +L   ++ 
Sbjct: 344 IKGVTNSLRDAVILVVLILFLFLQNWKATLVPAIAIPVALIGTFALVLAFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           G+VL  GL VD  I V E    +  +  +   +        +S  I  S +   +   VL
Sbjct: 404 GLVLATGLVVDDAITVVEDTSAKKAEGLTSVQAAMATMDELFSAVIATSLVKMAVFLPVL 463

Query: 478 FFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           FF G  G   + FA T+  SI IS F A++    +   ++     
Sbjct: 464 FFPGATGTIYKQFAATILFSIGISTFNALTFSPMLAALLLSRDTK 508



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 6/143 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T      FG   N   +  ++   G  V+D + V +       
Sbjct: 369 WKATLVPAIAIPVALIGTFALVLAFGFSLNQLTLFGLVLATGLVVDDAITVVE---DTSA 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
                ++       +++E     + TS+      LP+  + G    I   FA  + F I 
Sbjct: 426 KKAEGLTSVQAAMATMDELFSAVIATSLVKMAVFLPVLFFPGATGTIYKQFAATILFSIG 485

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
           ++  +++  +  +   +     K
Sbjct: 486 ISTFNALTFSPMLAALLLSRDTK 508



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 88/244 (36%), Gaps = 10/244 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V+ +   S   +      +        +F +    +   + A+ +        +  I  
Sbjct: 879  YVNNAKGESIPLAEFFTVEATTGPSVIPHFNLYRSIKVEGNPAEGKSSGQAITAMKTIFN 938

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVII---SAIAMLIYIWIRFK-WYFALGAITTLILD 703
              + Q        ISRE ++ G + V+I     +A+ + +  +++ +   +  + T+   
Sbjct: 939  DGSFQGLGFDWTGISREEVKAGSLAVVIFALGILAVFLVLSAQYESYTDPIIILLTVPTA 998

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +   L F    G   N+ A   ++ LIG +  + +++ D      +      S  D    
Sbjct: 999  LLGALVFLGAAGQVLNIYAQVGLVMLIGLAGGNAILIVD---LANQKMGEGASALDAARF 1055

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + T++++    LP+ +    G     S  + +  G++VA   S  +     
Sbjct: 1056 AAKSRLRPILMTAISSLTGFLPLMLASGAGAQSQSSLGLVVFGGLLVATFLSTLVVPVFY 1115

Query: 821  LFIY 824
            + + 
Sbjct: 1116 VVMK 1119


>gi|254702736|ref|ZP_05164564.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 3
           str. 686]
 gi|260568359|ref|ZP_05838828.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 4
           str. 40]
 gi|261753326|ref|ZP_05997035.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 3
           str. 686]
 gi|260155024|gb|EEW90105.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 4
           str. 40]
 gi|261743079|gb|EEY31005.1| hydrophobe/amphiphile efflux-1 family protein [Brucella suis bv. 3
           str. 686]
          Length = 1074

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLLSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQARSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLTLTTRGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPSGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|254796975|ref|YP_003081812.1| protein-export membrane protein SecD [Neorickettsia risticii str.
           Illinois]
 gi|254590220|gb|ACT69582.1| protein-export membrane protein SecD [Neorickettsia risticii str.
           Illinois]
          Length = 502

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 172/522 (32%), Positives = 296/522 (56%), Gaps = 20/522 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR+      L   +  I   +   NF             P  +I+LGLDLRGG  + + +
Sbjct: 1   MRSLRVKCFLLLFLFLISAFVVWGNFSSG----------PNKKINLGLDLRGGVSITMSI 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           + + +++  L+    E+  F K++GI +  +   ++   +S +    KEN    +  F +
Sbjct: 51  NRNGYIHEKLRRLVSEILEFAKEKGIKIKKIGIDESNQIISISLEHSKENNIAVIRDFFK 110

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                +  +  +          + +  S+  ++++    +E S+  +R+R+D+ G+ E+ 
Sbjct: 111 TSGEIVFDNIDQ------KRAYMQLSYSERYLNEINKKLLEDSITNLRRRVDEFGVRETL 164

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           I  LG  RI I++PG  DP  L  LLG TAK+SFH V+ +      + G  FL+D  G  
Sbjct: 165 IYSLGGDRIAIEVPGLHDPEELVTLLGKTAKLSFHIVVNDT---ATILGKFFLKDKFGRN 221

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +E    ++G  L+ A+  F  +   PVV   F+  G ++  ++++ N+G+ +A+VLD 
Sbjct: 222 LPLERTPSLTGDLLDDASVAFSQRG-VPVVRFKFNAYGTKKLEQLSKANVGRAMAIVLDD 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +LTAPVI   I +G+ +ISGNF ++ A  LA +L++GSLP +L ++E+R +G  LG+++
Sbjct: 281 LILTAPVIRDPIINGRGEISGNFDVKEAKELALLLKSGSLPAELTVIEQRAIGPSLGAEA 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  A +  ++L+V FM+  YG +G+ A  ++ +N+ L +A L+LL ATLTLP IAG+
Sbjct: 341 ILLGKRASLLAMLLVVTFMLFAYGWYGVAATIALIVNLTLLVASLTLLEATLTLPGIAGL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L IG+AVD+N+L+ ER+REE ++   +  SL  GF  A +TIFD+NIT ++A V++ F 
Sbjct: 401 ILTIGMAVDANVLIFERMREEFKRTGVLRNSLINGFEHAKATIFDANITTILAAVMMIFI 460

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G G +R FA+T+ L I+ S+F++I + R ++   +  KK   
Sbjct: 461 GSGPIRSFAVTLSLGIITSVFSSIFVTRVLLEAFVLSKKPSK 502



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 79/178 (44%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  E I  G    +++ + ++ ++   + W + + A   LI+++T  +    L
Sbjct: 329 QRAIGPSLGAEAILLGKRASLLAMLLVVTFMLFAYGW-YGVAATIALIVNLTLLVASLTL 387

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 L  +A ++  IG +V+  V++++RMR+  K    +   R+ +            
Sbjct: 388 LEATLTLPGIAGLILTIGMAVDANVLIFERMREEFK---RTGVLRNSLINGFEHAKATIF 444

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             ++   ++ + M   G   I SFA+ ++ GI+ +  SSIF+   +L      +  + 
Sbjct: 445 DANITTILAAVMMIFIGSGPIRSFAVTLSLGIITSVFSSIFVTRVLLEAFVLSKKPSK 502


>gi|224824200|ref|ZP_03697308.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Lutiella
           nitroferrum 2002]
 gi|224603619|gb|EEG09794.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Lutiella
           nitroferrum 2002]
          Length = 1069

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 66/624 (10%), Positives = 172/624 (27%), Gaps = 43/624 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  IG L  +     +  + ++PS  P +                    
Sbjct: 8   RPVFAWVIALLILLIGGLSVV-----KLPVAQYPSIAPPSV---------SVSATYAGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + +        + +      ITL F      +    +V   LQ 
Sbjct: 54  AETLQNSVTTVIEQQMNGIDGLLYMSSNSQSSGQATITLYFQPGTNPDIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +         ++    +       A+     I    +DQ+       
Sbjct: 114 AMPRLPTEVQQQGVKVAKATRNYLMFVTLSSTDGSVDAVGLGNYISSSLLDQLSRVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P +L     TT+ +       N        G            
Sbjct: 174 EANLFGS-EYAMRVWVSPDKLNSFKMTTSDIIAAIKAQNVQVSAGELGGLPAIKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +S                +    +        R        I           
Sbjct: 233 TIRAQSRLS-------------TPEQFGNILLRVNKDGSRVLLRDVARIELGAQTFTTKA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +   T +        L           V          S   
Sbjct: 280 YVDGKPAAAVGIKLAPSANALATAQAVRDKVKALSPYFPAGVKADVPYDTSKFVKISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+    + + +  TL  ++  G ++ + ++ G+V
Sbjct: 340 VVKTLIEAVALVFLVMYLFLQNFRATLIPTIVVPVALAGTLGAMAAFGFSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +  + +   ++      + + FF
Sbjct: 400 LAIGMLVDDAIVVVENVERIMSEEGLPPRKATRKAMEQITNALIGISLVLTAVFIPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSIDINP 527
           GG      R F++++  S++ S+  A+++  A+   +++                 + + 
Sbjct: 460 GGSVGAIYRQFSLSLVASMVFSVLLALTLTPALCATLLKPVDAGHHHAKSGFFGWFNRSF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +A    +   + +   ++  + ++            + +G     V    
Sbjct: 520 AASTNKYQGAVAKIIHKTGRYMLLYFVIIGVVALLFARLPSSFLPEEDQGYSITMVQLPT 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNF 611
                  R  LE ++   +     
Sbjct: 580 GATAENTRGILEKVEQYYLKQPET 603



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 74/183 (40%), Gaps = 6/183 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A  + +    K ++   P     +      K  +  I + +  +I +   + + +++  +
Sbjct: 301 ATAQAVRDKVKALSPYFPAGVKADVPYDTSKFVKISIEEVVKTLIEAVALVFLVMYLFLQ 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + +  TLG  A FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 361 NFRATLIPTIVVPVALAGTLGAMAAFGFSINVLTMFGMVLAIGMLVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +  R    K++ +     +  S+      +PMA +GGSV      F++ +   +
Sbjct: 419 IMSEEGLPPRKATRKAMEQITNALIGISLVLTAVFIPMAFFGGSVGAIYRQFSLSLVASM 478

Query: 806 VVA 808
           V +
Sbjct: 479 VFS 481



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 81/229 (35%), Gaps = 8/229 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S       +      S+ +   E+   V      G +       E ++     +  L 
Sbjct: 789  NASGTMVPFSAFASAKWSYGSPRLERYNGVPSMEIVGTAAPGKSSGEAMQAIEEIVAKLP 848

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                 E  G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 849  AGFGIEWTGQSYEERLSGSQAPALFAISLVVVFLCLAALYESWSIPFSVMLVVPLGVFGA 908

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L G+  ++     +LT IG S  + +++ +  +    L     S  +   ++++ 
Sbjct: 909  LLAAHLRGLPNDVFFKVGLLTTIGLSTKNAILIIEFAKD---LQAQGKSVIEATLEAVHL 965

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             L   + TSMA  + VLP+A+    G +   +    +  G++ A   +I
Sbjct: 966  RLRPILMTSMAFVLGVLPLAISNGAGSASQHAIGTGVIGGMLSATFLAI 1014


>gi|332305123|ref|YP_004432974.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172452|gb|AEE21706.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1055

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 63/536 (11%), Positives = 149/536 (27%), Gaps = 39/536 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  IG L           ++++P   P               + +    
Sbjct: 10  RPKFASVLAIIVLIIGSLA-----YFSLPVEQYPQIAPPT-------------VQVVATY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                          L   +   E +   S +   +    IT++F      +N   +V  
Sbjct: 52  PGASAEVAAKTVATPLEQEINGVENMLYMSSQSTADGRVTITVTFKLGTDLDNAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    ++  + T       +++               +     Q  DQ+   
Sbjct: 112 RVAIAEPRLPETVRRLGITTKKNSPDLMLVVNMYSPNGTYDQTYIANYAALQIRDQLSRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L        +    DP  +  L  T +++       N            +    
Sbjct: 172 DGVGDILTFGASQYSMRVWLDPDIIASLDMTASEVVTALQGQNIQVASGTLNQSPVDAGQ 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               L                        +   ++       +         +       
Sbjct: 232 TAFEL-------------NVQTQGQLIEPEEFENVIIKNQDGKIVRLRDVGRVELGAESY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T +        +     P     +          
Sbjct: 279 TTRGYLGDKKAVAMPVFQRPGSNAIKTADAIKAAMVEVAKNFPPDLTYEIAYNPTDFISE 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  + T      LV++V+ + +   +  L+   +I ++++ T A+LS LG +L   ++
Sbjct: 339 SITAVEHTIYEAIALVVLVIMVFLQNWRAALIPIIAIPISLVGTFAVLSALGFSLNNLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +      +     +     +    +  +   +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERLMAQGMRPLKAARQTMTEVGGAVLAIGLVLVAVFLPT 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            F     G     F IT+ ++ +IS+  ++ +  A+   + +  K +S        
Sbjct: 459 AFVDGISGQFYSQFGITIAVATIISVSVSLILSPAISAVLFKPHKDESEKTGMFHY 514



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 11/143 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRK 746
             W   L  I  + + +   +    L G++ N+     ++ L+G +  + +++  + R R+
Sbjct: 897  SWTLPLSVILIVPMCLLSAIVGVHLMGLDNNILTQVGLIVLVGLASKNAILIVEFARHRE 956

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                        +    +    L   + TS A  + VLP+AV    G  +  +  + +  
Sbjct: 957  -----HEGAGLYEAASDAAKLRLRPILMTSFAFILGVLPLAVATGAGAEMRQALGVAVFS 1011

Query: 804  GIVVAASSSIFIAAPILLFIYDW 826
            G++      + I  P+   +   
Sbjct: 1012 GMLGVTFFGL-IFTPVFYVLMRK 1033



 Score = 44.7 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 70/207 (33%), Gaps = 9/207 (4%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                 + A    +  V K     +      N      +    +       + +  + ++
Sbjct: 300 SNAIKTADAIKAAMVEVAKNFPPDLTYEIAYNPTDFISESITAVEHTIYEAIALVVLVIM 359

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++     W  AL  I  + + +  T    +  G   N   +  ++  IG  V+D +VV 
Sbjct: 360 VFLQ---NWRAALIPIIAIPISLVGTFAVLSALGFSLNNLTLFGLVLAIGIVVDDAIVVV 416

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFA 798
           + M    +L    +       +++ E  G  +   +      LP A      G     F 
Sbjct: 417 ENM---ERLMAQGMRPLKAARQTMTEVGGAVLAIGLVLVAVFLPTAFVDGISGQFYSQFG 473

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYD 825
           I +A   +++ S S+ ++  I   ++ 
Sbjct: 474 ITIAVATIISVSVSLILSPAISAVLFK 500


>gi|313202877|ref|YP_004041534.1| acriflavin resistance protein [Paludibacter propionicigenes WB4]
 gi|312442193|gb|ADQ78549.1| acriflavin resistance protein [Paludibacter propionicigenes WB4]
          Length = 1019

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 74/574 (12%), Positives = 168/574 (29%), Gaps = 40/574 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     ++L  +I  +G +           +  +P+  P                    
Sbjct: 8   LKRPIGSIVLSLVIILMGAV-----GFNFLSVRLYPAIDPPIIT---------VQTSYTG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    ++  + ++             + IT+ F      E  A+ V   + 
Sbjct: 54  ANGEIIESQITEPLEKAINGIEGVKSISSQSAIGSSNITVEFELGADLEKAANDVRDKVS 113

Query: 121 GVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                L  D     ++         I++          +AIE S        +++     
Sbjct: 114 QGMRSLPQDIDAPPIVTKADANGDPIIMLTVQSAN--MNAIELSDYAETVLQEKLQTIPG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                   +    +    +P+++  L  T   +S      N    G          +   
Sbjct: 172 VSSVSIFGQQRPAMRLWFNPAKMAALNVTPGDVSTALQKENVEMPGGKIRGNATELTVKT 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  + +                      ++   +   +                   
Sbjct: 232 FGRLLTEKDF--------------------NNLIIRQTDNQVIRLSDIGEAVLGPQNEES 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G  +                +     +      A ++          V          S 
Sbjct: 272 GGTINGNTGLNLAIIPLPGANTIQISDEFNKRLAQIKLNLPKGVELNVGRDKSDFVRQSV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T  I   LV++++F+        L     I ++++ T  ++ + G ++ + S+ G
Sbjct: 332 KDVVETLLISIFLVVLIIFLFFRNWIIALRPLIDIPVSLVGTFFIMYIFGFSINVLSLLG 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL  GL VD  I+V E I +   +  + F +   G    +  +  +++T  I  + + F
Sbjct: 392 IVLATGLVVDDGIVVTENIFKRIEQGMNKFQAALEGTREIFFAVISTSLTLAIVFIPVIF 451

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
              F G   R F I +  ++LIS   ++++   + +F+       S        FF+  +
Sbjct: 452 LQGFTGRLFREFGIVVASAVLISALVSLTLTPVLNVFLGGSASHHSNFYVKSEFFFVGME 511

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
               +F+        IS       I ++F  G N
Sbjct: 512 KKYRRFLSFFIKNKWISFSILGLCIVIIFALGRN 545



 Score = 89.0 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 97/255 (38%), Gaps = 7/255 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +    N+ + LS +   +   Q  +            L  +     +++  +  
Sbjct: 240 DFNNLIIRQTDNQVIRLSDIGEAVLGPQNEESGGTINGNTGLNLAIIPLPGANTIQISDE 299

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
                 +I   +P     N         R+ ++  +  ++IS   +++ I++ F+ W  A
Sbjct: 300 FNKRLAQIKLNLPKGVELNVGRDKSDFVRQSVKDVVETLLISIFLVVLIIFLFFRNWIIA 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  +  + + +  T     +FG   N+ ++  ++   G  V+D +VV + +    K    
Sbjct: 360 LRPLIDIPVSLVGTFFIMYIFGFSINVLSLLGIVLATGLVVDDGIVVTENI---FKRIEQ 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
            ++      +   E     + TS+   I  +P+     + G +   F I +A  ++++A 
Sbjct: 417 GMNKFQAALEGTREIFFAVISTSLTLAIVFIPVIFLQGFTGRLFREFGIVVASAVLISAL 476

Query: 811 SSIFIAAPILLFIYD 825
            S+ +   + +F+  
Sbjct: 477 VSLTLTPVLNVFLGG 491



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ + I   +    +FG   N+ +   ++ LIG    + +++     +  
Sbjct: 875  SFRDPFIIMLTVPMAIAGAMLSLWIFGQTLNIFSEIGMILLIGIVTKNGILIV----EFA 930

Query: 749  KLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                   ++ R    +S        + TS+A     LP+A+    G +      I +  G
Sbjct: 931  NQKRKLGMNKRVAAFESAAARFRPILMTSLATIFGALPIALALGAGSTSRIPLGIVVVGG 990

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            +  +   ++F+   + + +      N
Sbjct: 991  LCFSLLLTLFVIPIMYIVMSSKNKTN 1016


>gi|325142862|gb|EGC65229.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis 961-5945]
          Length = 1067

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 159/570 (27%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 102/291 (35%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    +++       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|322614632|gb|EFY11561.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620151|gb|EFY17023.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623445|gb|EFY20284.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629257|gb|EFY26036.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631977|gb|EFY28731.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637285|gb|EFY33987.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642170|gb|EFY38779.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646265|gb|EFY42779.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322652467|gb|EFY48821.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653370|gb|EFY49703.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660481|gb|EFY56717.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664633|gb|EFY60826.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669314|gb|EFY65464.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670860|gb|EFY66993.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678902|gb|EFY74957.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681930|gb|EFY77955.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322688056|gb|EFY84022.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194411|gb|EFZ79606.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197053|gb|EFZ82195.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203378|gb|EFZ88403.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206877|gb|EFZ91830.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210353|gb|EFZ95245.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214595|gb|EFZ99346.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223152|gb|EGA07495.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323224877|gb|EGA09140.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230081|gb|EGA14201.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233819|gb|EGA17908.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238487|gb|EGA22545.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244175|gb|EGA28184.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246335|gb|EGA30318.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251961|gb|EGA35824.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257958|gb|EGA41637.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261583|gb|EGA45161.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265041|gb|EGA48540.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272604|gb|EGA56011.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 1055

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRSSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|204926737|ref|ZP_03217939.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|204323402|gb|EDZ08597.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 1055

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRIWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|302060322|ref|ZP_07251863.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato K40]
          Length = 451

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 49/470 (10%), Positives = 122/470 (25%), Gaps = 30/470 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------AIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVRDAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLRDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S   
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLLGTFGILAGFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           L IGL VD  I+V E +      +  S   +     ++    +    +  
Sbjct: 400 LAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSMTQIQGALVGIALVL 449



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 62/178 (34%), Gaps = 4/178 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLRDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I+  +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESIKGVVHTLIEAIVLVFLVMYLFLQNFRATVITTLTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDL 760
            T G  A FG   N   +  ++  IG  V+D +VV    +R+ +  KL     + + +
Sbjct: 378 GTFGILAGFGFTINTLTMFGMVLAIGLLVDDAIVVVENVERVMEEEKLSPRDATIKSM 435


>gi|301307783|ref|ZP_07213739.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 20_3]
 gi|300834126|gb|EFK64740.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 20_3]
          Length = 1012

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 77/605 (12%), Positives = 173/605 (28%), Gaps = 44/605 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G +           +  FPS                 ++      
Sbjct: 11  RPVLSTVMMLVILLFGFI-----GYRFLGVREFPSVDQPII---------SVNVSYPGAN 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    ++  + +           Q  ++IT+ F  S   E  A+ V   +   
Sbjct: 57  ADVIMNQITEPLEQNINGIPGIRSLSSVSSQGSSRITVEFELSVDMETAANDVRDKVSRA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D     +         I+      +      +E S        +++   E+   
Sbjct: 117 QRYLPRDCDPPTVSKADADASPIMQIAIRSN--KRSLMELSEIAELTVKERLQTIENVSG 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +    +    DP ++     T   +       N            +  S     L
Sbjct: 175 VDIWGQKRYSMRLWLDPIKMAGYGVTPMDVKNAVDNENVELPSGSIEGNTISLSIRTLGL 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                 T K   D+   E                    +     
Sbjct: 235 --------------------MHTAKEFNDLIIKEDNNNIVRFSDIGRAEVAPEDLRSLLK 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   +   +     + A      L+          +   N      S S  
Sbjct: 275 KNGEPMVMTVIIPQPGANHIEIADEAYKRIEQLQKDLPEDVTIEMMYDNTRFIRASISEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      LV++++F+ +   +  LV    I ++++    ++ + G ++ + ++  +VL
Sbjct: 335 QQTIYEAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYISGFSVNVLTMLAVVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL VD  I+V E I     +  S   +   G    +  +  + IT +   + + F  G
Sbjct: 395 SVGLVVDDAIVVAENIYVRIEQGMSPKEAGIEGSKEIFFAVVSTTITLISVFLPIVFMEG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 + F+I +  S+ IS F A++    +   +++ ++ K+        FF   + I 
Sbjct: 455 MTGRLFKEFSIVIAGSVAISSFVALTFTPMLATKLLKRREKKNWFYRKTEPFFEGLNTIY 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNY-----GIDFKGGIQLGVLANRPVDLSVV 594
            + + A       SI   I     +     N       ++ +  I + +          +
Sbjct: 515 AKSLNAFLNHKIWSIPIVILLFGSIGYFWKNIRSELSPLEDRSMISVNMRGPEGATFEFI 574

Query: 595 RSNLE 599
           R   +
Sbjct: 575 RDYAD 579



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 73/166 (43%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  +I++ + + + +  +F+ +   L  + T+ L I   L F +  GI  N+ +   ++ 
Sbjct: 847  MFAMILALLMIYLVLAAQFESFKDPLVVMFTVPLAIAGALMFMSYSGITMNIFSQIGIIM 906

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +   + +S  + I  S  + L   + TS++  + ++P+  
Sbjct: 907  LIGLVAKNGILIVEFAN---QRQESGLSLPEAIRLSATQRLRPILMTSVSTILGLVPLVY 963

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G          + +  G++V+   ++FI   +  FI   R K  
Sbjct: 964  ATGEGAQGRIAMGVAVVGGMLVSTFLTLFIVPAMYSFISTNRKKQN 1009



 Score = 81.7 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 79/240 (32%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ +    +  +  +N +     ++  Q             + +++   ++    TI+  
Sbjct: 261 RAEVAPEDLRSLLKKNGEPMVMTVIIPQPGANHIEIADEAYKRIEQLQKDLPEDVTIEMM 320

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + +LI       W   L  +  + + +        + 
Sbjct: 321 YDNTRFIRASISEVQQTIYEAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYIS 380

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+  + AV+  +G  V+D +VV + +          +S ++   +   E     V 
Sbjct: 381 GFSVNVLTMLAVVLSVGLVVDDAIVVAENI---YVRIEQGMSPKEAGIEGSKEIFFAVVS 437

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++      LP+    G        F+I +A  + +++  ++     +   +   R K  
Sbjct: 438 TTITLISVFLPIVFMEGMTGRLFKEFSIVIAGSVAISSFVALTFTPMLATKLLKRREKKN 497


>gi|254673965|emb|CBA09749.1| putative efflux system transmembrane protein [Neisseria
           meningitidis alpha275]
          Length = 1067

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 159/570 (27%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 102/291 (35%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    +++       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|308389833|gb|ADO32153.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis alpha710]
 gi|325201633|gb|ADY97087.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis M01-240149]
 gi|325208632|gb|ADZ04084.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis NZ-05/33]
          Length = 1067

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 159/570 (27%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 102/291 (35%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    +++       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSLE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|86751134|ref|YP_487630.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           HaA2]
 gi|86574162|gb|ABD08719.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           HaA2]
          Length = 1053

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 76/663 (11%), Positives = 173/663 (26%), Gaps = 49/663 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC +G +       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVALFICLLGAISI-----PFLPIAQYPIIAPP-------------SISVSTQY 49

Query: 63  DDFVNG----FLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                      +    +E  +          +     Q +I  +F      E  +  V  
Sbjct: 50  PGASPENLYNSVTRLIEEELNGANGILNFESTSDSLGQVEIIANFEPGTDTEMASVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ + ++L     +  ++        + +   +        +     +IR  + +I   
Sbjct: 110 RIKRIEARLPRAVLQQGILVEEASSAVLQIITLSSTDGSLDEVGLGDFMIRNVLGEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +L     T  +++      N        G        
Sbjct: 170 PGVGRATLY-STERALRIWIDPDKLVGYNLTADEVTKAIEAQNAQVASGAVGAEPSAKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  K ++S                +    +                 I       
Sbjct: 229 KTSVLVLVKGQLSSAD-------------EFGAVVLRANPDGSTVRLRDVARIEIGGFSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 QFNTRLNGKPTAGLSVLMSPTGNALATASAVEAKMKELSRFFPANISYQIPYNITPVVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   ++ ++    + + ++ T   L L G ++ + ++
Sbjct: 336 SITKVVHTLLEAVALVFVVMFLFLQNIRYTIIPTIVVPVALLGTCVSLLLFGYSINMLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +     ++  S I    +  +   V 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMAEEGLPPKEATRKAMTQITSAIIGITLVLIAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + FF G      R F++TM  +I  S   A+++  A+   +         + +       
Sbjct: 456 MAFFPGSVGIIYRQFSVTMVSAIAFSALMALTLTPALCATLLKPVVKGHAHAERGFFGRF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI-DFKGGIQLGVLA 585
                        I        G  + +   +  +       +  G         + V  
Sbjct: 516 NRILDGTRERYSRIVRWNLGRTGRLMILYAVLLGVLGWGLVRMPGGFLPIDDQGFITVDL 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             P D S  R+     ++ D   +    +    +      G  +   +    +K      
Sbjct: 576 QTPSDSSYNRTFEVIKKVEDYLLKRDGVDNVTFLTGFSFLGQGMNAAQAFVTLKDWSERD 635

Query: 646 VPL 648
              
Sbjct: 636 GKS 638



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V            + +        L  L    G+++A    +E   K+++   P 
Sbjct: 260 VRLRDVARIEIGGFSYQFNTRLNGKPTAGLSVLMSPTGNALATASAVEAKMKELSRFFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +           +    I K +  ++ +   + + +++  +   + +     + + +  T
Sbjct: 320 NISYQIPYNITPVVEASITKVVHTLLEAVALVFVVMFLFLQNIRYTIIPTIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                LFG   N+  +  ++  IG  V+D +VV + +     +    +  ++   K++ +
Sbjct: 380 CVSLLLFGYSINMLTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPKEATRKAMTQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  ++      +PMA + GSV      F++ M   I  +A  ++ +   +   + 
Sbjct: 438 ITSAIIGITLVLIAVFVPMAFFPGSVGIIYRQFSVTMVSAIAFSALMALTLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/426 (10%), Positives = 122/426 (28%), Gaps = 15/426 (3%)

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            +   +       +G  +++            R  +S   ++    ++A  ++ D+ I A 
Sbjct: 603  VDNVTFLTGFSFLGQGMNAAQAFVTLKDWSERDGKSSAAAIVDDANKALGSVRDARIAAQ 662

Query: 472  IATVVL-------FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                +        F F             +     +  A +    +    +       + 
Sbjct: 663  QPPPIDNLGNSSGFSFRLQDRGQKGYPALIQASQQLVAAANASPILENVYVEGLPPAPVI 722

Query: 525  INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               + R       +  Q +         S   +           +             +L
Sbjct: 723  NLMIDREKAGAFGVTFQDINNTISTNLGSAYVNDFPNRGRMQRVIVQADIPDRMKADDIL 782

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 +       L S    + S                  G + A     + + +    
Sbjct: 783  TYSVKNSRGQLVPLSSFATIEWSKGPTQVVGFNYYPAIRVSGQARAGYTSGDAIAEMERL 842

Query: 645  IVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
               L      +  G  +  +L   +    + +SA+ + + +   ++ W   +  + T+ L
Sbjct: 843  AAQLPRGFGYDWTGQSLQEKLSGSQAPFLLALSALVVFLVLAALYESWTIPVAVLLTVPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   +       +  ++     ++T+IG +  D +++ +  +    L     S R+   
Sbjct: 903  GIIGAVVAATTRSLPNDVYFTVGLITIIGLAAKDAILIVEFAKD---LRKEGKSLREATL 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPI 819
            ++ +      V T +A    VLPMA+  G+   S       +  G++     ++ +    
Sbjct: 960  EACHLRFRPIVMTGLAFCSGVLPMAIATGAGAKSQQALGTSVMGGMIAVVVLALLMVPVF 1019

Query: 820  LLFIYD 825
             + +  
Sbjct: 1020 FVVVQR 1025


>gi|325134752|gb|EGC57389.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis M13399]
          Length = 1067

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 159/570 (27%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERHMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 101/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|161615477|ref|YP_001589442.1| hypothetical protein SPAB_03248 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161364841|gb|ABX68609.1| hypothetical protein SPAB_03248 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1055

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTTKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|119953431|ref|YP_945640.1| preprotein translocase subunit SecF [Borrelia turicatae 91E135]
 gi|119862202|gb|AAX17970.1| protein translocase subunit SecF [Borrelia turicatae 91E135]
          Length = 299

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 138/300 (46%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +           +   V   ++ S      ++  G N+GIDF  G+ +  + ++      
Sbjct: 1   MQKVFNFLKYGNKVIIVSFCMILSGFIYTFMYHGGYNWGIDFSSGVNINFVIDKSGIKDY 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI-----TEIVPL 648
               + S                   +        +    + + +   +     TE    
Sbjct: 61  DIQRILSSVYKTFDVNKIISSDESKSQFSIIVKSDITDYALKKEIHSTLIDKLNTEFGAN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I ++  +    S  L  K ++ V ++   +L Y+ +RF+  +A+ +I   I DI   +
Sbjct: 121 VEILDSYFIDSNFSSILRTKSMLLVCLTFTLILFYVALRFRLSYAVASIFATIHDILFVV 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  +F IE N + + ++LT+IGYS+ND ++++DR+R+N +  T ++ F ++++ SI +T
Sbjct: 181 AFLGIFRIEINSSIIVSILTIIGYSLNDTIIIFDRIRENSRNMTDTL-FLNILNVSIKQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R++ TSM  F++VL + V+    I  F++    G+VV   SSIFIA+PILL  Y    
Sbjct: 240 LSRTILTSMTTFVAVLSIYVFTEGAIKDFSLIFMVGVVVGTYSSIFIASPILLSCYKKIK 299


>gi|116695059|ref|YP_840635.1| cation/multidrug efflux pump [Ralstonia eutropha H16]
 gi|113529558|emb|CAJ95905.1| Cation/multidrug efflux pump [Ralstonia eutropha H16]
          Length = 1078

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 76/699 (10%), Positives = 189/699 (27%), Gaps = 54/699 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  IG +        +  +  +P  +P + +                  
Sbjct: 27  RPIFAGVLSVLIFLIGAISMF-----KLPISEYPEVVPPSVV---------VRAQFPGAN 72

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +   S +   +    +T++F      +     V   +
Sbjct: 73  PKVIAETVASPLEEQINGV--EDMLYMSSQSNSDGLLTLTVTFKLGTDPDKAQQLVQNRV 130

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +L  D ++  + T        ++                   +    D++   + 
Sbjct: 131 SQAEPRLPEDVRRLGITTVKSSPDLTMVVHLVSPNDRYDMTYLRNYAVINVKDRLARLQG 190

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P ++ +    T+ +       N      + G          
Sbjct: 191 VGQVQLFGSGDYAMRVWLNPEKMAERQLATSDVVRAIREQNVQVAAGVIGQSPALPGADL 250

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V  +  +S +              +    +          +      I    +    
Sbjct: 251 QLSVNAQGRLSTVE-------------EFADIVVRTSADGAVTYLKDVARIELGASEYAL 297

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +     +        L+          +          S 
Sbjct: 298 RSLLDNKPAVAIPIFQAPGSNAIQISDDVRKTMEELKQNFPDGIDYSIVYDPTQFVRHSI 357

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++++ T  L+   G ++   S+ G
Sbjct: 358 EAVTHTLFEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFGLMHAFGFSINALSLFG 417

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +T +   V L F
Sbjct: 418 LVLAIGIVVDDAIVVVENVERNIEEGLTPKEATYKAMREVSGPIIAIALTLIAVFVPLAF 477

Query: 480 F---GGGAVRGFAITMGLSILISMFTAISIVRA--------------MMIFIIRYKKMKS 522
                G   + FA+T+ +S +IS F ++++  A               +   +       
Sbjct: 478 MTGLTGQFYKQFALTISISTIISAFNSLTLSPALSALLLRSHDAPKDWLSRWMDRVFGGF 537

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                                  R  G    +   + ++       +  G       Q  
Sbjct: 538 FKRFNRFFGRSAESYGRGVKGVIRRKGSVFGVYAVMLALTWGVFQLVPKGFVPAQDKQYL 597

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D + +    + ++          G ++ +                  +     
Sbjct: 598 VGFAKLPDGATLDRTEDVIRKMSDIALKHPGVESAVAFPGLSINGFTNSPSAGIVFATLK 657

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               P    +  E+ G  I+ +L +K    V  + IA+ 
Sbjct: 658 ----PFEERKTKELSGAAIAADLNQKYA-AVQDAFIAVF 691



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    L   + N+      + L+G S  + +++ +  R+  
Sbjct: 919  SLTLPLAVILIVPMSLLAAMTGVWLTQGDNNIFTQIGFIVLVGLSAKNAILIVEFARE-- 976

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS A  + V+P+ +    G  +  +  + +  G+
Sbjct: 977  -LEHHGRTVVQAAIEASRLRLRPILMTSFAFIMGVVPLVISTGAGSEMRHAMGVAVFAGM 1035

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +     +  R
Sbjct: 1036 LGVTFFGLFLTPVFYVALRLLATRGQR 1062



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 82/233 (35%), Gaps = 17/233 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     I      G     +    +      +    + +   I 
Sbjct: 287 RIELGASEYALRSLLDNKPAVAIPIFQAPGSNAIQISDDVRKTMEELKQNFPDGIDYSIV 346

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   +    +V ++               W  ++  +  + + 
Sbjct: 347 YDPTQFVRHSIEAVTHTLFEAIALVVLVVILFLQT-----------WRASIIPLLAVPVS 395

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T G    FG   N  ++  ++  IG  V+D +VV + + +N++     ++ ++   K
Sbjct: 396 IVGTFGLMHAFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEE---GLTPKEATYK 452

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
           ++ E  G  +  ++      +P+A      G     FA+ ++   +++A +S+
Sbjct: 453 AMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTIISAFNSL 505


>gi|86358946|ref|YP_470838.1| multidrug-efflux system, acriflavin resistance protein [Rhizobium
           etli CFN 42]
 gi|86283048|gb|ABC92111.1| multidrug-efflux system, acriflavin resistance protein [Rhizobium
           etli CFN 42]
          Length = 1066

 Score =  173 bits (438), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 147/544 (27%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P  +P + +                  
Sbjct: 10  RPVFAGVLSVLIVVAGLI-----GLRALPISEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PSVIAETVATPLEEQINGVEGMLYMSSQATSDGVLNVTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T       I++     D                  D++       
Sbjct: 116 AEPRLPAEVRALGITTVKSSPDFIMVVNLVSDGDSHDITYLRNYATLNIKDRLARIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +     + +S      N      + G    +     Q 
Sbjct: 176 QVQVFGAGDYSMRVWLDPQKAAEHDLAASDISNAISSQNVQAAAGIIGASPSQPGVDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    A      
Sbjct: 236 NVNAQGRL-------------RTPEEFGNIIVKTGANGEITRLRDVARIELGAADYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 283 LLDGKPAVAVAVLQAPGSNAIEIADNVRATMDQLQLAMPEGVKYEIVYDTTKFVRSSIEK 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G ++   S+ G+V
Sbjct: 343 VIDTLLEAIALVVLVVIVFLQTWRASIIPLIAVPVSIIGTFAVMYVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEQGLSPRAATYKAMKEVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S +IS F ++++  A+   +++        +             
Sbjct: 463 GLSGQFYRQFALTIAISTVISAFNSLTLSPALAALLLKGHHAPKDWLTRFMDAIFGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 GFNR 526



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAIIMIVPMGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     + R+   ++    L   + TSMA  + V+P+ V    G  +  +  + +  G+
Sbjct: 960  -LEFEGRTPREAAVEASRLRLRPILMTSMAFIMGVVPLVVSTGAGAEMRAAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      IF+     + +  
Sbjct: 1019 IGVTFFGIFMTPVFYVLLRR 1038



 Score = 45.8 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---IAVPVSIIGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI---E 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R    K++ E  G  +  ++      +P+A      G     FA+ +A   V++A
Sbjct: 425 QGLSPRAATYKAMKEVSGPIIAIALVLVAVFVPLAFISGLSGQFYRQFALTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 FNS 487


>gi|168465425|ref|ZP_02699307.1| OqxB [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|205351668|ref|YP_002225469.1| cation efflux protein [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207855833|ref|YP_002242484.1| cation efflux protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|195631644|gb|EDX50164.1| OqxB [Salmonella enterica subsp. enterica serovar Newport str.
           SL317]
 gi|205271449|emb|CAR36263.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206707636|emb|CAR31920.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326626699|gb|EGE33042.1| OqxB [Salmonella enterica subsp. enterica serovar Gallinarum str.
           9]
          Length = 1055

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|16763731|ref|NP_459346.1| cation efflux system protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167992185|ref|ZP_02573283.1| OqxB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|197262845|ref|ZP_03162919.1| OqxB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|16418852|gb|AAL19305.1| putative cation efflux system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|197241100|gb|EDY23720.1| OqxB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA23]
 gi|205329480|gb|EDZ16244.1| OqxB [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261245634|emb|CBG23430.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992044|gb|ACY86929.1| putative cation efflux system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301156963|emb|CBW16446.1| putative cation efflux protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911382|dbj|BAJ35356.1| putative cation efflux system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225067|gb|EFX50128.1| RND efflux system, inner membrane transporter CmeB [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323128664|gb|ADX16094.1| putative cation efflux system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332987299|gb|AEF06282.1| putative cation efflux system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 1055

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ M +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVMFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 87/240 (36%), Gaps = 17/240 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            D   +RS L       +      G     V    +      Q    + ++ +I     +
Sbjct: 274 ADAYTLRSLLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTV 333

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + V   +   L+   +V V+               W  ++  +  + + +  T 
Sbjct: 334 FVRASLQSVAITLLEALVLVVLVVVMFLQT-----------WRASIIPLVAVPVSLVGTF 382

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               LFG   N  ++  ++  IG  V+D +VV + +    +  +   S  +   K+++E 
Sbjct: 383 ALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ERHISQGKSPGEAAKKAMDEV 439

Query: 769 LGRSV-YTSMAA--FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  +  TS+    FI    +A   G     FA+ +A   +++A +S+ ++  +   +  
Sbjct: 440 TGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLR 499


>gi|222106970|ref|YP_002547761.1| acriflavin resistance protein B [Agrobacterium vitis S4]
 gi|221738149|gb|ACM39045.1| acriflavin resistance protein B [Agrobacterium vitis S4]
          Length = 1044

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/686 (12%), Positives = 183/686 (26%), Gaps = 41/686 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   G L           + ++P   P +                   
Sbjct: 7   RRPIFAWVIAIVIMLGGGLAI-----TSLSISQYPEIAPPSV---------KISATYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    ++  + L        S     + ITL+F +S   +    +V   LQ 
Sbjct: 53  SADTVKKTVTQIIEDGMTGLDGLTYMTSSSTSGSSSITLTFDNSIDPDMAQVQVQNKLQL 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    +   +  T      +++           + +       Q  DQ+   E   
Sbjct: 113 VESQLPSVVQNLGIEVTKSTSSILLVGALVSTDGKRTSADLGDIFSAQIEDQVKRLEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +LR+   T A ++      N        G     +      
Sbjct: 173 NINAFGS-AFAMRIWLDPFKLRKFQLTPADVTSAIEAQNTQISVGSVGGLPAVEGQQINV 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++                     I   +             +           
Sbjct: 232 TMTAQSQLT-------------TVSDFERIILKVDTSGANVRLSDVARVEIGQESYTSTS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +    +     +   T        A +          I           S   
Sbjct: 279 RSNRQAASGFAVNLATGANALDTASRVKAKLAQIAPALPQNVSIIYPYDTTPFVSLSIEK 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  VL + +   +   +   ++ + ++ T  +L+L G ++   ++  +V
Sbjct: 339 VVHTLIEAIVLVFFVLLIFLQNLRATFIPMIAVPVVLLGTFGILALTGYSINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +           I    +      V + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERIMTEEGLPPLEATQKSMGEITGAIVGIALVLTAVFVPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F++T+  ++L+S   A+ +  A+   I++            + +F     
Sbjct: 459 GGSTGIIYRQFSVTIISAMLLSAVVALVLTPALCATILKPIDKSHRKTTGPAAWFNRNFD 518

Query: 538 IAIQFMRAR---------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                                +  ++L   C+   L         + +G +   V     
Sbjct: 519 RTTNGYVWSIGHLLRRPLRLLLIFAVLVGGCAWLFLRLPSSFLPQEDQGVLMTIVQLPNG 578

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
              +     ++ ++   +  ++   +  F V      G       V   +K       P 
Sbjct: 579 STSAQTGEVMKKVEDYLLDKESSVVDSVFAVNGFSFNGSGQNYGLVFAKLKDFDLRKKPD 638

Query: 649 STIQNTEIVGPKISRELIRKGIVGVI 674
                           +    +  ++
Sbjct: 639 MAASAIVQRAMGYFMTIREAQVFPIL 664



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 87/240 (36%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +   V LS V       +    + ++     +          +++     ++    +I 
Sbjct: 254 TSGANVRLSDVARVEIGQESYTSTSRSNRQAASGFAVNLATGANALDTASRVKAKLAQIA 313

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             +P +                I K +  +I + + +   + I  +        +  + +
Sbjct: 314 PALPQNVSIIYPYDTTPFVSLSIEKVVHTLIEAIVLVFFVLLIFLQNLRATFIPMIAVPV 373

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T G  AL G   N   + A++  IG  V+D +VV + +     +    +   +   
Sbjct: 374 VLLGTFGILALTGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMTEEGLPPLEATQ 431

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+ E  G  V  ++      +PMA +GGS       F++ +   ++++A  ++ +   +
Sbjct: 432 KSMGEITGAIVGIALVLTAVFVPMAFFGGSTGIIYRQFSVTIISAMLLSAVVALVLTPAL 491



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 78/248 (31%), Gaps = 10/248 (4%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S       S                  V      G +       + + +    +  + 
Sbjct: 789  NSSNEMVPFSSFTDAKWVNGLPSISAFNAVTAFSLDGSAAPGVSSGDAMNEVERLVSKME 848

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITK 706
                    G      L       ++ +   +++++    +   W      I  + + +  
Sbjct: 849  GGYTVAWQGISYQERL-SGSQAPLLYALSVLIVFLCLSALYESWSIPFSVIMAVPIGVLG 907

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +    L G + ++     +LT IG +  + +++ +  ++        +S  D   ++  
Sbjct: 908  AVAAATLMGQDNDVYFKVGLLTTIGLAAKNAILIVEFAKE---RQEHGLSLMDATLEAAR 964

Query: 767  ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + TS+A  + V+P+A+    G +   +  I +  G++ A    IF      + +
Sbjct: 965  LRLRPIIMTSLAFILGVVPLAIATGAGSAAQNAIGIGVLGGMLSATLLGIFFVPSFFVIV 1024

Query: 824  YDWRAKNA 831
                 +  
Sbjct: 1025 RRASNRAK 1032


>gi|189463433|ref|ZP_03012218.1| hypothetical protein BACCOP_04152 [Bacteroides coprocola DSM 17136]
 gi|189429862|gb|EDU98846.1| hypothetical protein BACCOP_04152 [Bacteroides coprocola DSM 17136]
          Length = 1011

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/689 (12%), Positives = 197/689 (28%), Gaps = 57/689 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L  +I   GL+           +  +PS                  +     
Sbjct: 9   RRPVLATVLTIIILLFGLI-----GYTTLGVREYPSVDNPI-----------ISVTCSYS 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    ++  + +          RQ Q +IT+ F  S   E  A+ V   +
Sbjct: 53  GANADIIESQITEPLEQNINGIPGIRSLSSVSRQGQCRITVEFELSVDLETAANDVRDKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  D     +         I++    I       +E S        +Q+     
Sbjct: 113 SRAQRYLPRDCDPPTVSKADADASPILMV--AIQSNTRSLLELSEIADLTVKEQLQTISD 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP+++     T   +                        D  
Sbjct: 171 VSSVSIWGEKRYSMRLWLDPTKMAGYGITPVDIKNAI--------------------DNE 210

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                     T     ++   E+  +              A +  
Sbjct: 211 NVELPSGSIEGNTMELTLRTMGQMHTATEFNNVVIKEVNGQVIRLSDIGYAELGAADIKS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +    +   +   +   +     +        ++              N      S 
Sbjct: 271 YMKMNGVPMVGVVVIPQPGANHIEIADAVYERMEQMKKDLPEDVSFSYGFDNTKFIRASI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  + T      LV+I++F+ +   +  L+    I +++I    ++ + G ++ + ++  
Sbjct: 331 AEVESTVYEAFILVIIIIFLFLRDWRVTLIPCIVIPVSLIGAFFVMYVAGFSINVLTMLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I++ E I     +    F +   G    +  +  + IT +   + + F
Sbjct: 391 VVLSVGLVVDDAIVMTENIYIRIERGMKPFDAGIEGAKEIFFAVISTTITLVAVFLPIVF 450

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R F+  +  S+LIS F A++    +   ++ +++ +S        FF   +
Sbjct: 451 MEGTSGRLFREFSFVVAGSVLISSFAALTFTPMLATKMLVHREKQSWFYRKTEPFFEGMN 510

Query: 537 CIAIQ----FMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            I  +    F++ RF  + +S I   +  +           ++ +  I +   A      
Sbjct: 511 RIYSRSLNAFLKKRFIAIPVSIITLILIGVLWNVIPAEMAPLEDRSKITISTKAAEGASY 570

Query: 592 SVVRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
             +R   E +     S              G  N  + L+       +Q  V E + K I
Sbjct: 571 EYIRDYTEDINALVDSIIPDAEAVTARVSSGSGNVQITLKDIKDRDYSQMEVAEKISKAI 630

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                       +         +  + ++
Sbjct: 631 KSKTKARAFVQQQSSFGGRKSSMPVQYVL 659



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 72/200 (36%), Gaps = 7/200 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
                KI       T +       K  RE     +   I++ + + + +  +F+ +     
Sbjct: 813  EEMDKIASETLDETFRTALSGDSKDYRESSSSLMFAFILALVLIYLILAAQFESFKDPFI 872

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      +      
Sbjct: 873  IMLTVPLAIAGALIFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN---QKQEAGE 929

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSS 812
                 I  +  + L   + TS +  + ++P+A   G            +  G++++   +
Sbjct: 930  DKMLAIRDAALQRLRPILMTSASTILGLIPLAFATGEGANQRIAMGTAVVGGMLISTFLT 989

Query: 813  IFIAAPILLFIYDWRAKNAR 832
            ++I   I  +I   R K  +
Sbjct: 990  MYIVPAIYTYISTNRIKKEK 1009



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        + G   N+  + AV+  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLIPCIVIPVSLIGAFFVMYVAGFSINVLTMLAVVLSVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +   D   +   E     + T++      LP+    G+       F+  +A  
Sbjct: 410 YIRIERGMKPFDAGIEGAKEIFFAVISTTITLVAVFLPIVFMEGTSGRLFREFSFVVAGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   R K +
Sbjct: 470 VLISSFAALTFTPMLATKMLVHREKQS 496


>gi|161620407|ref|YP_001594293.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Brucella
           canis ATCC 23365]
 gi|161337218|gb|ABX63522.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Brucella
           canis ATCC 23365]
          Length = 1074

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLLSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQARSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLTLTTRGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPSGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|325122861|gb|ADY82384.1| RND multidrug efflux transporter MexF [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 1059

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/523 (12%), Positives = 145/523 (27%), Gaps = 33/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDSRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVTAIREQNIQVAAGTIGASPSNSPLQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 +    +      
Sbjct: 236 NAQGRL---------------TTEQEFADIILKTASDGAVTRLGDVARVELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIEAGLSPRDATYRAMREVSGPIIAIALTLVAVFVPLAFMT 460

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G   + FA+T+ +S +IS F ++++  A+   +++    K
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALAAMLLKGHDAK 503



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 118/395 (29%), Gaps = 18/395 (4%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
            ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 652  AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 711

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   +  M           ++D++ +           +      + G      F+   
Sbjct: 712  AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 771

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +          L +         V  S+L ++                   
Sbjct: 772  RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 831

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 832  INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 890

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++     L  I  + + I   L    L G + N+     ++ L+G +  + ++
Sbjct: 891  FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTGGDNNIFTQIGLMVLVGLACKNAIL 950

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  R+   L     +      ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 951  IVEFARE---LEMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 1007

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I + FG++      +F+     + I    +K+ 
Sbjct: 1008 MGIAVFFGMIGVTLFGLFLTPAFYVLIRTLNSKHK 1042



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 363 WRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S RD   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 423 A---GLSPRDATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 480 ISAFNSLTLSPALAAMLLK 498


>gi|116748895|ref|YP_845582.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697959|gb|ABK17147.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 1055

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/535 (13%), Positives = 145/535 (27%), Gaps = 28/535 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++  IGL+      +    + +FP+ +P   I +     G   + +E   
Sbjct: 8   RPIVAMVIAILMVIIGLVA-----MSGLPIAQFPNIVPP-EIQVKTTYTGADAITVEQSV 61

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVF-SMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +        S +         +    Q  + ++F              +    
Sbjct: 62  ATPIEQQM--------SGVDNMNYMYSLNANNGQMTLYVNFDVKTDPNTDQILAQMREGQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  D +   +         +++            I  +        DQ+       
Sbjct: 114 AESQLPSDVRNYGVTVQKSTSAPLIMFALYSPNGTYDGIFLANYAYININDQMTRVRGIA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L +L  T  ++       N        G   +       Y
Sbjct: 174 SVTIFGAGQYSMRFWVKPDQLAKLNITIPEIVNAIQAQNTVNPAGQIGAEPVPPGQEFTY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +                 +    I   +             I           
Sbjct: 234 AVRAKGRLETER-------------EFGEIIVRAQPDGSFVRLNDVARIELGSQTYNLMG 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     E A  L A L+    P     V      A       
Sbjct: 281 RLNGKPAALVALYQLPGSNAIEAAEGAKNLMARLKESFPPDLEYAVALDTTLAVTEGMKE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+IV+F+ +   +  L+   ++ ++++ T AL  L G ++   S+ G+V
Sbjct: 341 IRKTLVEALVLVIIVVFLFLQGWRATLIPLLAVPVSLVGTFALFPLFGFSINTLSLFGLV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +        +   +           +    I      V   F  
Sbjct: 401 LAIGLVVDDAIVVVEAVEHHIEHGMTPKDATLKAMEEVSGPVIAIAIILAAVFVPTAFIP 460

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           G   R +        +  + +A + +           + K     PL+ FF   +
Sbjct: 461 GITGRLYQQFAVTIAVSVVISAFNALTLSPALASLLLRPKKESRGPLAVFFRWFN 515



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 79/188 (42%), Gaps = 9/188 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                ++  +K+     +  +   +T +   +  +E+ +  +  +++  I + +++    
Sbjct: 305 EGAKNLMARLKESFPPDLEYAVALDTTLAVTEGMKEIRKTLVEALVLVIIVVFLFLQ--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T   F LFG   N  ++  ++  IG  V+D +VV + +    
Sbjct: 362 GWRATLIPLLAVPVSLVGTFALFPLFGFSINTLSLFGLVLAIGLVVDDAIVVVEAV---E 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                 ++ +D   K++ E  G  +  ++      +P A   G        FA+ +A  +
Sbjct: 419 HHIEHGMTPKDATLKAMEEVSGPVIAIAIILAAVFVPTAFIPGITGRLYQQFAVTIAVSV 478

Query: 806 VVAASSSI 813
           V++A +++
Sbjct: 479 VISAFNAL 486



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 58/167 (34%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +V    S + + + +  +++ W      +    + +        +   E N+ A   ++ 
Sbjct: 874  VVIFGFSLLCVFLILAAQYESWSLPFSVLLGTPVAVAGAFAGLWVGRFENNIYAQIGLVM 933

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA- 787
            LIG +  + +++ +  +             +   +     L   + TS A  +  +P+A 
Sbjct: 934  LIGLAAKNAILIVEFAK---MGVEQGKPLVEATLEGARLRLRPILMTSFAFILGCVPLAK 990

Query: 788  VWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G   +        +  G++ A+  +IF+       I     +  R
Sbjct: 991  ASGAGALSRQVMGFAVIGGMLAASFIAIFLIPVTFYVIEKLSHRGKR 1037


>gi|121533333|ref|ZP_01665161.1| acriflavin resistance protein [Thermosinus carboxydivorans Nor1]
 gi|121307892|gb|EAX48806.1| acriflavin resistance protein [Thermosinus carboxydivorans Nor1]
          Length = 1028

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/677 (10%), Positives = 195/677 (28%), Gaps = 45/677 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   +  +    +  +G             +D +P+                  +    
Sbjct: 8   LKRPVFATVTILALIVLGFFS-----YATLNVDEWPNVEFPYVT---------VMVTYRG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  S +        ++R+  +  T+ F         A  V   + 
Sbjct: 54  ASPEQVETKITQKVEEAVSSIAGVKHIYSTIREGVSYTTIEFTLETSPATAAQDVRDKIG 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +L  D  + +++     E  I       +       E ++ +      ++      
Sbjct: 114 RIRGELPQDADEPVIMRFDPSEAPIASVVVTGN---MSVRELTILVDDVIKRRLETVNGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      ++    D  ++     T  ++  +                      G  
Sbjct: 171 GAINVYGASKREIQINLDKDKIAAYGLTIPEIVDNLR--------------------GEN 210

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V       G          + KT +  ++         + +      +          
Sbjct: 211 LEVPGGKVTHGDREVVMRTAGNYKTVQDFLNAPVGRRDNVQLYVANIATVTDTTEEPTSI 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          ++  +    ++    +   L+    P    ++   N      S  
Sbjct: 271 TKFNGREAIGLDIMKQSGTNTVQVVKDVKKVLEELKKDLPPGVELVLVRDNSRTIKESVD 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   L + ++F+ +   +  +++  +I  ++I T  ++ LL  TL   S+  +
Sbjct: 331 DVIFNLVLGGVLAVAIVFLFLGNWRSTMISAIAIPASIISTFFIMKLLNFTLNTMSLMAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL +D  I+V E I       +  F +   G       +  + +T +   V +   
Sbjct: 391 SLAVGLLIDDAIVVIENIVRHMEMGKDKFTAALEGTQEIGLAVTATTLTLVAVFVPVGLM 450

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + F IT+  S+L+S+F A ++   +    +     +  +       +     
Sbjct: 451 SGIVGQFFKQFGITVAFSVLVSLFVAFTLTPMLSANYLDIAHGQKNNALGRFITWWNRHF 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG----VLANRPVDLSV 593
             +    + F    ++    + +  +L        + F G   +        +  VD+  
Sbjct: 511 DRLTERYSAFLASALTKRGKVAAAAVLMFIASLGLVPFLGSNFISRTDNAEFSVTVDVDA 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMVKKKITEIVPLSTIQ 652
             S   S  + D   +         +       D+    TR+ E  ++K ++   ++ ++
Sbjct: 571 GMSVAGSSALADRLTEIIRAVPEVTMTYSVADADTIKIYTRLTEKQQRKRSDDQIIAELR 630

Query: 653 NTEIVGPKISRELIRKG 669
                 P +   + +K 
Sbjct: 631 GKLNAIPGVKVSVTKKA 647



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 7/151 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+   +A+ I       W   + +   +   I  T     L     N  ++ A+   +G 
Sbjct: 337 VLGGVLAVAIVFLFLGNWRSTMISAIAIPASIISTFFIMKLLNFTLNTMSLMALSLAVGL 396

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            ++D +VV + +   ++             +   E       T++      +P+ +    
Sbjct: 397 LIDDAIVVIENI---VRHMEMGKDKFTAALEGTQEIGLAVTATTLTLVAVFVPVGLMSGI 453

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            G     F I +AF ++V+   + F   P+L
Sbjct: 454 VGQFFKQFGITVAFSVLVSLFVA-FTLTPML 483



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 77/220 (35%), Gaps = 9/220 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  +  +  +++ +K+ +I              +   E      + + 
Sbjct: 797  DRQKQIQLSANLEGTSLGKFNKVLTEKLKQIPLPPGYSFVATGEAERMGESFTSIGMALA 856

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI--EFNLTAVAAVLTLIGY 732
            ++ I +   +  +F+ Y    AI  L L +        L  +  + ++ ++  V+ L+G 
Sbjct: 857  LAVIFIFFVLAAQFESYIDPFAI-MLSLPLAIIGAILGLLVMKSDLSIMSLIGVIMLMGL 915

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D  +   +     I     + ++    +   + T+ A    +LP+A     
Sbjct: 916  VTKNAILLIDFTK---QRRAEGIDRDTALVEAARIRMRPIMMTTAAMVFGMLPLAFGIGP 972

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G       A  +  G++ +   ++ +   +   + D + K
Sbjct: 973  GAEARAPMAHAIIGGLITSTILTLLVVPVVYSLLDDGKQK 1012


>gi|325168781|ref|YP_004280571.1| hydrophobe/amphiphile efflux-1 HAE1 [Agrobacterium sp. H13-3]
 gi|325064504|gb|ADY68193.1| hydrophobe/amphiphile efflux-1 HAE1 [Agrobacterium sp. H13-3]
          Length = 1026

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 74/626 (11%), Positives = 164/626 (26%), Gaps = 42/626 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++       PQ  + RFP   P +            +       
Sbjct: 8   RPVFAWVIAILIVIAGVISI-----PQLPVSRFPVIAPPSV---------SIYATYTGAT 53

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +N  +    + EL S          +       IT++F      E     V   L+ 
Sbjct: 54  PKTINDSVTSLIERELSSAKNILYFDSSADSSGSANITVTFKPGTNPELAQVDVQNRLKA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    ++  L   +     +++           A+     ++R    ++       
Sbjct: 114 VEPRLPEQVRRAGLTVESASSGFLMIVSLKSKDGSLDALALDDYLVRNIAPELKRVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP RL     + A+ +      N        G            
Sbjct: 174 RVQSFGS-EAAMRIWLDPVRLVAHSISMAEATQAIQQQNVPVAPGRLGESPTVPGQKVTV 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    ++                 +    I        R        I           
Sbjct: 233 PLNVSGQL-------------QTPEQFAQIILRSNPDGSRLTLGDVSTIEVGSQSSSFSI 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +        A        +   T        A L           +          S   
Sbjct: 280 LDGGKPATAAAIQMTPGANAVSTSNGVRERLAELATTMPQGMEYAISYDTAPFVKVSIQK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +++ + +   ++ L+      + ++ T A++  +G ++   ++ G+V
Sbjct: 340 VVQTLAEAMVLVFLIMLLFLQNLRYTLIPAIVAPIALLGTFAVMLAIGYSINALTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +     +     +    +      + +   
Sbjct: 400 LAIGIIVDDAIVVVENVERLMATEGLSPLEATRKAMTEISGAVIGITLVLTAVFLPMGMA 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
            G      R F ++M +SIL S F A+S+  A+   +          +       +    
Sbjct: 460 SGSVGAIYRQFTVSMAVSILFSAFLALSLTPALCATLLKPVSHDHDQKKGFFGWFNRAFE 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +AI   +     V    + +                + +G           
Sbjct: 520 RLTERYAGWVAILLRKTGRTMVVYLAIIAAVGYGYAKVSTAFVPDEDQGSFMTSYTLPAD 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGE 614
                 R+ ++  +    +  +    
Sbjct: 580 STAERTRAVVDLFEDHVKTRPDIANN 605



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 79/203 (38%), Gaps = 10/203 (4%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-W 685
            S      L  +   + + +  +   +T        +++++     +++  + ML+++  
Sbjct: 302 TSNGVRERLAELATTMPQGMEYAISYDTAPFVKVSIQKVVQTLAEAMVLVFLIMLLFLQN 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +R+    A+ A   L      T       G   N   +  ++  IG  V+D +VV + + 
Sbjct: 362 LRYTLIPAIVAPIAL----LGTFAVMLAIGYSINALTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMA 802
               + T  +S  +   K++ E  G  +  ++      LPM    G  G++   F + MA
Sbjct: 417 -ERLMATEGLSPLEATRKAMTEISGAVIGITLVLTAVFLPMGMASGSVGAIYRQFTVSMA 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I+ +A  ++ +   +   +  
Sbjct: 476 VSILFSAFLALSLTPALCATLLK 498



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 67/166 (40%), Gaps = 7/166 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + +  S + + + +   ++ W   L  +  + L I   +    L G+E ++     +
Sbjct: 864  QAPILMAFSFLIVFLVLAALYESWTVPLSVMMVVPLGILGAVIAVHLRGLENDVFFKVGL 923

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG S  + V++ +  R   K      S  D + ++    L   V TS+A  + ++P+
Sbjct: 924  ITLIGLSAKNAVLIVEFAR---KRQQDGQSLIDAVIEASRLRLRPIVMTSLAFTLGIVPL 980

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +  G       +    +  G++ A   ++       + +   + +
Sbjct: 981  VIAKGASSETQNAIGTGLFGGMISATVLAVMFVPVFYVLVASLKRR 1026


>gi|19552867|ref|NP_600869.1| preprotein translocase subunit SecF [Corynebacterium glutamicum
           ATCC 13032]
 gi|62390538|ref|YP_225940.1| preprotein translocase subunit SecF [Corynebacterium glutamicum
           ATCC 13032]
 gi|13346827|gb|AAK19843.1|AF331924_8 SecF [Corynebacterium glutamicum]
 gi|21324426|dbj|BAB99050.1| Preprotein translocase subunit SecF [Corynebacterium glutamicum
           ATCC 13032]
 gi|41325876|emb|CAF20039.1| Preprotein translocase subunit SecF [Corynebacterium glutamicum
           ATCC 13032]
          Length = 403

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/321 (19%), Positives = 134/321 (41%), Gaps = 11/321 (3%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                      L      I F+        I+ +  + SI  +   G +  IDF+GG ++
Sbjct: 15  KPAKKRSWFNSLYTGDGGIDFIAKTKLWYWITGILLVISILFIAIRGFSLSIDFQGGTKM 74

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR----VLEM 637
            + A+      V  +  E+  I     Q         + +  +        +    + E 
Sbjct: 75  SMPASDYSTEQVEETFTEATGITPEIVQIVGSGDARTLEIYSERLSDEDVEKARLAIYEE 134

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
            +   +E  P         V       + ++ ++ +I   +   IYI  R +   A+ A+
Sbjct: 135 YQPLNSEGQPSPDAIGNSTVSESWGSTITQRMVLALIAFLVIAAIYIAFRLEREMAIAAM 194

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSI 755
             L++D     G +A+ G+E +   V  +LT++ +S+ D VVV+D++R+N +    +   
Sbjct: 195 AALVVDGIVIAGIYAVIGLEVSPATVIGLLTVLTFSIYDTVVVFDKVRENTEGFEGSRRR 254

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAAS 810
           ++ +  + ++N+T  RS+ T++ + + ++ + V      G   +   A+    G++    
Sbjct: 255 TYAEQANLAVNQTFMRSISTTIISALPIIALMVVAVWMMGVGTLKDLALIQLIGVIEGTF 314

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
           SS+F+A P+L+ + +  +K  
Sbjct: 315 SSVFLATPLLVSLKNRLSKTK 335


>gi|299531193|ref|ZP_07044604.1| hydrophobe/amphiphile efflux-2 transporter [Comamonas testosteroni
           S44]
 gi|298720776|gb|EFI61722.1| hydrophobe/amphiphile efflux-2 transporter [Comamonas testosteroni
           S44]
          Length = 1059

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/694 (9%), Positives = 187/694 (26%), Gaps = 53/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +   G++        +  + +FPS  P               + +    
Sbjct: 8   RPIFAWVIAIFVIIAGVISI-----TKLPVAQFPSVAPPT-------------INVTATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
               +  +       +   +   +G+           Q  +T++FA     +     V  
Sbjct: 50  PGATSQTMTDSVLQLIEREINGAQGLMYMEASAPAGGQGTLTVTFAPGTNPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V  +L    +   +         +++     +   +   + +  + R  + +I   
Sbjct: 110 RLSRVLPRLPQVVQALGVRVDKSMSNFLMILAFQAESGETSRDDIADYVNRNVVPEIQRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L+    + A ++      N    G   G        
Sbjct: 170 DGVGKAQLFASGR-AMRVWVDPAKLQGFGLSIASVNAAIAAQNQQISGGALGNLPSTPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    +++                +    +                 I   +   
Sbjct: 229 TTTATIVVPGQLT-------------TPEEFGEVVLRSNSDGSTVRLKDVARIELGIESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +   T +      A +                      
Sbjct: 276 AFESRLDGKPAVAMAVQLTSTANAMATAKLVKAKMAEMEPFLPAGVKWSSPYDTSKFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+ + +   ++ L+    + + ++ T A++ + G T+ + ++
Sbjct: 336 SIEKVVHTLLEAIVLVFIVMLIFLQNIRYTLIPTIVVPIALLGTFAVMLVAGLTINILAM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    +    +  +   + 
Sbjct: 396 FAMVLVIGIVVDDAIVVVENVERIMAEEGLPPKEATIKAMGQIQGAVVGITVILVTVFLP 455

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L  F    G   R F++ M +SI  S F A+++  A+   +++                 
Sbjct: 456 LAMFSGATGNIYRQFSLVMAISIFFSGFFALTLTPALCATMLKPIPKGHAHDKKTGLLGP 515

Query: 534 IPDCIAIQFM------------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +    +F               +       +   + +  +     L            
Sbjct: 516 FYNWFNRKFDAGTKRYSSALSGVVKRSAQAFIVYLLVIAGVVFMFMRLPTAFLPTEDQGY 575

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +   +    + +    +++   +    +     + +  L +          +     K 
Sbjct: 576 VISLAQLPPGASLERTSKTMAELEKFALSQPETDHIVSILGFSFMGQGQNVGLAFTTLKD 635

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            +E     +   +     K +   +R G +  ++
Sbjct: 636 WSERAGAGSDAKSFADRAKGAMSALRDGFIFTLV 669



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 97/264 (36%), Gaps = 11/264 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +  ++L V   +   + +          G +    ++G  +  +  Q +PG +    
Sbjct: 782  MQPEDVMRLTVPNAQGQLVELSTMVSAKWISGPMQLTRYNGYPSMSITGQAKPGFTSGDA 841

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
                    +              +   K         ++    S +A+ + +   ++ W 
Sbjct: 842  MKEMEKLAQELPDGFGYEWTGQSLDEKKAGS----SAMLLYAFSILAVFLCLAALYESWS 897

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  +  + L +   +    + G+  ++    A++T+IG S  + +++ +  +    L+
Sbjct: 898  IPLSVLLVVPLGVFGAVAGMLMRGMPNDIYFQVALITVIGLSAKNAILIVEFAKD---LH 954

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVA 808
                S  +   ++ +      + TS+A  + V+P+ +  G+           + +G+V+ 
Sbjct: 955  AEGKSALEAALEAGHLRFRPILMTSLAFILGVVPLYIASGASAASQKEIGTGVFWGMVIG 1014

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               S+F+     + +++   K ++
Sbjct: 1015 TPISVFLVPVFFVAVFNLFGKKSK 1038



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 93/235 (39%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V      ++      +        +        +++A  ++++    ++   +P 
Sbjct: 260 VRLKDVARIELGIESYAFESRLDGKPAVAMAVQLTSTANAMATAKLVKAKMAEMEPFLPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               ++     K  +  I K +  ++ + + + I + I  +   + L     + + +  T
Sbjct: 320 GVKWSSPYDTSKFVKISIEKVVHTLLEAIVLVFIVMLIFLQNIRYTLIPTIVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G+  N+ A+ A++ +IG  V+D +VV + +     +    +  ++   K++ +
Sbjct: 380 FAVMLVAGLTINILAMFAMVLVIGIVVDDAIVVVENV--ERIMAEEGLPPKEATIKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LP+A++ G+       F++ MA  I  +   ++ +   +
Sbjct: 438 IQGAVVGITVILVTVFLPLAMFSGATGNIYRQFSLVMAISIFFSGFFALTLTPAL 492


>gi|270487610|ref|ZP_06204684.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Yersinia pestis KIM D27]
 gi|270336114|gb|EFA46891.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Yersinia pestis KIM D27]
          Length = 921

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 189/686 (27%), Gaps = 47/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITLVGWVS-----LYVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +       L + +           +     + +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAVASPLEAQVNGVSHMLYMESTSANNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       Q    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPQQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP R+  L  +   +       N        G      +
Sbjct: 169 ISGVGDVQVFGARDYSMRVWLDPQRMESLNVSVQDIVAALQQQNVQAAAGQIGSSPSMPN 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  ++                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLTDAR-------------QFADVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A         +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLSAAFPADLTYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL V+++ +   +   +   ++ ++++ T A+L + G +    S
Sbjct: 336 ATLHEIAVSLTLTLIVVLAVVYLFLQSLRATFIVALTVPVSLLGTFAVLYVFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +     N  + S   +     S+    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLSNDPHLSPAEATRQAMSQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V +    G      R FA+T+  ++++S   A+++  A+   +++ + + +  +      
Sbjct: 456 VPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPALCAVLLKRRTLATTGMFGTINK 515

Query: 532 FLIP----DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            L             +  R      ++L    +    ++      +  +      V    
Sbjct: 516 GLDRARDGYVGLTGRINRRAVFSIAALLLVGLATWWGYSRLPTSFLPEEDQGYFFVSLQL 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   S+ R+     Q+      N   E    +        + A      +V   +     
Sbjct: 576 PDGASLNRTQTVMDQMYQQVSTNEAVEDVIKITGFSLLSGNNAPNAGFAIVM--LKPWGQ 633

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
              I             +    I+ V
Sbjct: 634 RPHIDRVLASIQANLAAIPSAMIMAV 659



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P                  + +  V + ++ I +L  +++             T+ +
Sbjct: 316 AAFPADLTYEINYDSTLPVTATLHEIAVSLTLTLIVVLAVVYLFLQSLRATFIVALTVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +      +S  +   
Sbjct: 376 SLLGTFAVLYVFGYSANTLSLFAIILALTIVVDDAIVVVENV-ERLLSNDPHLSPAEATR 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++++  G  + T++      +P+A+     G +   FA+ ++  +++++ +++ ++  +
Sbjct: 435 QAMSQIAGPIIATTLVLMAVFVPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPAL 494

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 495 CAVLLKRR 502


>gi|168237454|ref|ZP_02662512.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194737679|ref|YP_002113380.1| OqxB [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|194713181|gb|ACF92402.1| OqxB [Salmonella enterica subsp. enterica serovar Schwarzengrund
           str. CVM19633]
 gi|197289541|gb|EDY28904.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 1055

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|168232308|ref|ZP_02657366.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194471234|ref|ZP_03077218.1| OqxB [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|194457598|gb|EDX46437.1| OqxB [Salmonella enterica subsp. enterica serovar Kentucky str.
           CVM29188]
 gi|205333403|gb|EDZ20167.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 1055

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|150009913|ref|YP_001304656.1| multidrug efflux membrane fusion protein [Parabacteroides
           distasonis ATCC 8503]
 gi|149938337|gb|ABR45034.1| multidrug efflux membrane fusion protein [Parabacteroides
           distasonis ATCC 8503]
          Length = 1011

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 77/605 (12%), Positives = 173/605 (28%), Gaps = 44/605 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G +           +  FPS                 ++      
Sbjct: 11  RPVLSTVMMLVILLFGFI-----GYRFLGVREFPSVDQPII---------SVNVSYPGAN 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    ++  + +           Q  ++IT+ F  S   E  A+ V   +   
Sbjct: 57  ADVIMNQITEPLEQNINGIPGIRSLSSVSSQGSSRITVEFELSVDMETAANDVRDKVSRA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D     +         I+      +      +E S        +++   E+   
Sbjct: 117 QRYLPRDCDPPTVSKADADASPIMQIAIRSN--KRSLMELSEIAELTVKERLQTIENVSG 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +    +    DP ++     T   +       N            +  S     L
Sbjct: 175 VDIWGQKRYSMRLWLDPIKMAGYGVTPMDVKNAVDNENVELPSGSIEGNTISLSIRTLGL 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                 T K   D+   E                    +     
Sbjct: 235 --------------------MHTAKEFNDLIIKEDNNNIVRFSDIGRAEVAPEDLRSLLK 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   +   +     + A      L+          +   N      S S  
Sbjct: 275 KNGEPMVMTVIIPQPGANHIEIADEAYKRIEQLQKDLPEDVTIEMMYDNTRFIRASISEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      LV++++F+ +   +  LV    I ++++    ++ + G ++ + ++  +VL
Sbjct: 335 QQTIYEAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYISGFSINVLTMLAVVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL VD  I+V E I     +  S   +   G    +  +  + IT +   + + F  G
Sbjct: 395 SVGLVVDDAIVVAENIYVRIEQGMSPKEAGIEGSKEIFFAVVSTTITLISVFLPIVFMEG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 + F+I +  S+ IS F A++    +   +++ ++ K+        FF   + I 
Sbjct: 455 MTGRLFKEFSIVIAGSVAISSFVALTFTPMLATKLLKRREKKNWFYRKTEPFFEGLNTIY 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNY-----GIDFKGGIQLGVLANRPVDLSVV 594
            + + A       SI   I     +     N       ++ +  I + +          +
Sbjct: 515 AKSLNAFLNHKIWSIPIVILLFGSIGYFWKNIRSELSPLEDRSMISVNMRGPEGATFEFI 574

Query: 595 RSNLE 599
           R   +
Sbjct: 575 RDYAD 579



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 74/165 (44%), Gaps = 7/165 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  +I++ + + + +  +F+ +   L  + T+ L I   L F +  GI  N+ +   ++ 
Sbjct: 847  MFAMILALLMIYLVLAAQFESFKDPLVVMFTVPLAIAGALMFMSYSGITMNIFSQIGIIM 906

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +   + +S  + I  S  + L   + TS++  + ++P+  
Sbjct: 907  LIGLVAKNGILIVEFAN---QRQESGLSLPEAIRSSATQRLRPILMTSVSTILGLVPLVY 963

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              G          + +  G++V+   ++FI   +  FI   R KN
Sbjct: 964  ATGEGAQGRIAMGVAVVGGMLVSTFLTLFIVPAMYSFISTNRKKN 1008



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 79/240 (32%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ +    +  +  +N +     ++  Q             + +++   ++    TI+  
Sbjct: 261 RAEVAPEDLRSLLKKNGEPMVMTVIIPQPGANHIEIADEAYKRIEQLQKDLPEDVTIEMM 320

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + +LI       W   L  +  + + +        + 
Sbjct: 321 YDNTRFIRASISEVQQTIYEAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYIS 380

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+  + AV+  +G  V+D +VV + +          +S ++   +   E     V 
Sbjct: 381 GFSINVLTMLAVVLSVGLVVDDAIVVAENI---YVRIEQGMSPKEAGIEGSKEIFFAVVS 437

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++      LP+    G        F+I +A  + +++  ++     +   +   R K  
Sbjct: 438 TTITLISVFLPIVFMEGMTGRLFKEFSIVIAGSVAISSFVALTFTPMLATKLLKRREKKN 497


>gi|104782184|ref|YP_608682.1| multidrug efflux pump MexD [Pseudomonas entomophila L48]
 gi|95111171|emb|CAK15891.1| multidrug efflux pump MexD (RND family) [Pseudomonas entomophila
           L48]
          Length = 1042

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/703 (11%), Positives = 180/703 (25%), Gaps = 64/703 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL+      P   + ++PS  P               + +    
Sbjct: 8   RPNFAWVMALFISLAGLLVI-----PALPVAQYPSVAPP-------------QISITASY 49

Query: 63  DDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                   ++  +  +   L   +G+  +      N   ++ ++F      +     V  
Sbjct: 50  PGASAKVLVESVTSIIEESLNGAKGLLYYESTNNSNGVAEVLVTFEPGTEADMAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID-QVISHAIEQSMEIIRQRIDQIGI 176
            L+   +++        L         +++                +    R   +++  
Sbjct: 110 RLKQAEARMPQAVLTQGLKVEQASAGFLLIYALTSKASDSGDTTALADYAARNINNELRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP +L     +   ++      N       FG       
Sbjct: 170 VPGVGKLQFFAS-EAAMRVWVDPQKLVGYGLSIDDINNAIRGQNVQVPAGSFGSTPGASE 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +                      +        R        +      
Sbjct: 229 QELTATLAVQGTL-------------DTPEAFAGIVLRANPDGSRVLLGDVARLAIGSEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +   T        A L           V         
Sbjct: 276 YNLSSRLDGHPAVAGAVQLAPGANAIQTATLVKERLAELSQFFPEGVEYAVPYDTSRFVD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T A    LV +V+F+ +   ++ L+    + + ++ TL ++ LLG ++ + +
Sbjct: 336 VAIEKVLHTLAEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLMVMKLLGFSVNMMT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +      +    I    +      +
Sbjct: 396 MFGMVLAIGILVDDAIVVVENVERLMAEEGLSPVAATVKAMGQVSGAIIGITLVLAAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---------I 523
            L F  G      + F++++ +SIL S F A++   A+   +++                
Sbjct: 456 PLAFMSGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLKPVPHGHHEKGGFFGAF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +              +    RA  W +    +  +     L         +  G   + V
Sbjct: 516 NRAFARVTERYSVMNSALVARAGRWMLAYVGILVVLGYSYLRLPEAFVPSEDLGYSIVDV 575

Query: 584 LANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                                   R  + S  I      +  G+   L    Y+      
Sbjct: 576 QLPPGASRVRTDHTAEALEQFLMSREAVASSFIVSGFSFSGQGDNAALAFPTYKDWSVRG 635

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           Q +  E     I      +       V P     L   G   +
Sbjct: 636 QEQSAEAETAAINAQFAANGDGTITAVMPPPIDGLGNSGGFAL 678



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  ++S +                 +++    +++    ++++  
Sbjct: 259 SRVLLGDVARLAIGSENYNLSSRLDGHPAVAGAVQLAPGANAIQTATLVKERLAELSQFF 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P            +     I K +  +  + + + + +++  +   + L     + + + 
Sbjct: 319 PEGVEYAVPYDTSRFVDVAIEKVLHTLAEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLL 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            TL    L G   N+  +  ++  IG  V+D +VV + +     +    +S      K++
Sbjct: 379 GTLMVMKLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERLMAEEGLSPVAATVKAM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  ++      LP+A   GSV      F++ +A  I+ +   ++     +   
Sbjct: 437 GQVSGAIIGITLVLAAVFLPLAFMSGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCAT 496

Query: 823 IYD 825
           +  
Sbjct: 497 LLK 499



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  +  + +     +    L G+  ++     ++T+IG +  + +++ +  ++  
Sbjct: 889  SWAIPLTVMLIVPIGALGAVWAVMLTGMPNDVYFKVGLITIIGLAAKNAILIVEFAKELW 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                   S RD   ++        V TSMA  + V+P+A+    G +   +    +  G+
Sbjct: 949  ---EKGYSLRDAAIEAARLRFRPIVMTSMAFILGVVPLAIATGAGAASQRAIGTGVIGGM 1005

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            + A    +       +F+     + 
Sbjct: 1006 LSATLLGVVFVPICFVFVLTLLKRK 1030


>gi|320106436|ref|YP_004182026.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Terriglobus saanensis SP1PR4]
 gi|319924957|gb|ADV82032.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Terriglobus saanensis SP1PR4]
          Length = 1066

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/596 (11%), Positives = 172/596 (28%), Gaps = 34/596 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +    I  IG +        +  L  +P  +P   I                 
Sbjct: 9   KRPIFAAVFSITIFVIGAVA-----YFRLPLSEYPDVVPPTVI---------VKATFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++F      +    +V   + 
Sbjct: 55  NPRVIADTVASPLEQQINGVENMLYTFSQATSDGAMTLTITFRLGTDLDKAQVQVQNRVA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L    ++  + T       ++L          + +  +   + Q  D++      
Sbjct: 115 QALPRLPEVVQRLGVTTEKSSPDLLLLVHLVSPNNRYNMLYLANLGVLQVKDELKRLPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD-GN 239
                       +    DP +L     T   +       N      + G   L+  +   
Sbjct: 175 GDVTIFGAGDFSMRIWLDPDKLNTHNLTVNDVVQAVRDQNLQVAAGVLGTPPLKTGETAF 234

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q LV  +  ++ +              +    I                +     +    
Sbjct: 235 QLLVNTQGRLTTVE-------------QFDNIIIRSTKDGALTRVRDVGHTEMGSSNYAL 281

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L            +   +   T +      A L+          +          S 
Sbjct: 282 RSLLDLRPAAAISVYLRPGSNALATAQQVRDTMARLKKSFPDGVDYQMPYDPTVFVRNSL 341

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++++ T +++ LLG +L   S+ G
Sbjct: 342 LAVAHTFVEALILVVLVVLVFLQTWRASIIPILALPVSLVGTFSIMLLLGFSLNTLSLFG 401

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +            +           I    +      +   F
Sbjct: 402 LVLAIGIVVDDAIVVVENVERNIELGYEPKEATRRAMHEVSGPIIAIALVLCAVFIPTAF 461

Query: 480 F---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLI 534
                G   + FA+T+ +S +IS F+++++  AM   +++ K  +  ++       F   
Sbjct: 462 IVGVSGQFYKQFALTIAISTVISAFSSLTLSPAMAALLLKPKGSEPDALTRGIDFAFGWF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  F  +     G+       SI ++  +     +   G  ++        D
Sbjct: 522 FRLFNHAFETSSNRYRGLVKKSLRGSIVVVIIYFGFTALTGLGFYRVPSGFIPNQD 577



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E       + L    ++ +  +S   + + +  +++ W      I  + + +   +G
Sbjct: 865  MTYEWSELTFQKILAGNTMIYIFPLSVFLVYLVLAAQYESWSLPFVIILIVPMTLFSAIG 924

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               L   + N+    +++ L+G +  + +++ +  R+  +     ++  D + ++    L
Sbjct: 925  GVWLTHGDNNIFTQISLIVLVGLACKNAILIVEFARE--REILEGMNRVDAVLEACRLRL 982

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS A  + V+P+      G  +  +  + + FG++      + +  P+   +   
Sbjct: 983  RPILMTSFAFTMGVVPLVFSNGAGSEMRRAIGVAVFFGMLGVTLFGL-LFTPVFYVLVTR 1041

Query: 827  RAKN 830
              K 
Sbjct: 1042 ERKR 1045



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 74/184 (40%), Gaps = 11/184 (5%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAI-----AMLIYIWIRFKWYFALGAITTLILDI 704
                +   P      +R  ++ V  + +      +L+ +     W  ++  I  L + +
Sbjct: 321 FPDGVDYQMPYDPTVFVRNSLLAVAHTFVEALILVVLVVLVFLQTWRASIIPILALPVSL 380

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T     L G   N  ++  ++  IG  V+D +VV + + +N++L       ++   ++
Sbjct: 381 VGTFSIMLLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIEL---GYEPKEATRRA 437

Query: 765 INETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++E  G  +  ++      +P A      G     FA+ +A   V++A SS+ ++  +  
Sbjct: 438 MHEVSGPIIAIALVLCAVFIPTAFIVGVSGQFYKQFALTIAISTVISAFSSLTLSPAMAA 497

Query: 822 FIYD 825
            +  
Sbjct: 498 LLLK 501


>gi|326576732|gb|EGE26639.1| RND system efflux pump AcrB [Moraxella catarrhalis 101P30B1]
          Length = 1032

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/677 (11%), Positives = 200/677 (29%), Gaps = 51/677 (7%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +G+L           ++++P   P               + +           ++   
Sbjct: 1   MLVGILAI-----NNLPIEQYPKIAPP-------------QVKVRAVYPGADAETVENSV 42

Query: 75  -DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
              +   +K       +   S       +TL+F +    +    +V   LQ   S L   
Sbjct: 43  TQIIEQQMKGIDGLMYMSSNSSAAGSASVTLTFENGTDPDTAQVQVQNKLQSAMSSLPET 102

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            ++  L         ++++    +       + +  +    +D I   E           
Sbjct: 103 VQRTGLNVEKSASDFLMVTAFVSEDGSMDQSDIADYVATSIVDPISRVEGVGGTNVFGS- 161

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +    DP++LR      + +S      N        G                    
Sbjct: 162 SYAMRIWLDPAKLRAYNLIPSDVSSAIRSQNVQVSAGQLGTLPTNTDRVV---------- 211

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I+   +  ++     +    +   +    +        +                  +
Sbjct: 212 --INATISVQSYLQTPEQFEDILLKTDTAGAQVRIKDVARVELGSENYQFRAQYNGQAAS 269

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                     +     E  G+    L          +V          S +    T    
Sbjct: 270 GLAIMLAPGANALEVREAVGVRLDELSQNFPTGLKMVVPYDTTPFVRLSITQVVYTLLEA 329

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV +V+F+ +   +  ++   ++ + ++ T A+LS+ G ++ + ++  +VL IGL VD
Sbjct: 330 VVLVFLVMFLFLQNWRATIIPTLAVPVVILGTFAVLSVFGYSINILTMFAMVLAIGLLVD 389

Query: 430 SNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG--A 484
             I+V E +     +N S   +  ++      +   I  + I +++   ++FF G     
Sbjct: 390 DAIIVVENVERILEENPSIQVMDATIQSMREISKVVIGIALILSVVFVPMIFFGGSSGVI 449

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------SIDINPLSRFFLI 534
            R FA+T+  S+++S F A+    A+ + I++ +  K            +          
Sbjct: 450 YRQFAVTLMTSMVLSAFIALVFTPALCVTILKRQAHKDINIQTGFFGWFNRFFYQTSRRY 509

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            + I   +     +    + + ++ ++  +         + +G +   V       L   
Sbjct: 510 ENFIGKTYASKLAYLAVYTGIVAVMALIFMRLPSSFVPEEDQGAVMTLVQLPAGSTLDKT 569

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + ++ L       +  + E  F +      G           +K         +T Q+ 
Sbjct: 570 NAVMDKLANYYHDKETDNIESVFTISGFGFMGSGQNSGMAFIKLKDWDERAGSENTAQSI 629

Query: 655 EIVGPKISRELIRKGIV 671
                 ++  +    ++
Sbjct: 630 ARRAMVMNMMIPEASLI 646



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 94/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V +  V       +      Q      + L  +     +++     + +   +++
Sbjct: 237 TAGAQVRIKDVARVELGSENYQFRAQYNGQAASGLAIMLAPGANALEVREAVGVRLDELS 296

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P               R  I + +  ++ + + + + +++  + W   +     + +
Sbjct: 297 QNFPTGLKMVVPYDTTPFVRLSITQVVYTLLEAVVLVFLVMFLFLQNWRATIIPTLAVPV 356

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T    ++FG   N+  + A++  IG  V+D ++V + + + +     SI   D   
Sbjct: 357 VILGTFAVLSVFGYSINILTMFAMVLAIGLLVDDAIIVVENV-ERILEENPSIQVMDATI 415

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S+ E     +  ++   +  +PM  +GGS       FA+ +   +V++A  ++     +
Sbjct: 416 QSMREISKVVIGIALILSVVFVPMIFFGGSSGVIYRQFAVTLMTSMVLSAFIALVFTPAL 475

Query: 820 LLFIYDWR 827
            + I   +
Sbjct: 476 CVTILKRQ 483



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 69/169 (40%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   +S + + + +   ++ W  +   I  + L +  +L    + G+  ++    A+
Sbjct: 854  QAPILYALSILVVFLCLAALYESWSVSFAVILVIPLGVIGSLLLTKIHGLANDVYLQVAL 913

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT+IG S  + +++ +  ++   +  +  + +  I  +    L   + TS+A  + V+P+
Sbjct: 914  LTVIGLSAKNAILIIEFAKE---IQESGQTLKASIMMAARMRLRPIIMTSLAFGVGVVPL 970

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +    G     +    +  G++ +    IF      +++        +
Sbjct: 971  YIATGAGSGSQNAVGTGVLGGVLTSTFLGIFFIPMFYVWVRTLFPYKPK 1019


>gi|163858829|ref|YP_001633127.1| AcrB/AcrD/AcrF family protein [Bordetella petrii DSM 12804]
 gi|163262557|emb|CAP44860.1| AcrB/AcrD/AcrF family protein [Bordetella petrii]
          Length = 1061

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/700 (11%), Positives = 169/700 (24%), Gaps = 29/700 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVIVLLAGLLAMF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T+ F      +     V   +  
Sbjct: 56  PKVIAATVASPLEESINGVEDMLYMQSQANSDGNLAVTVYFKLGVDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + TT       ++                   +    D++       
Sbjct: 116 ALPRLPPDVQRLGVTTTKSSPTLTLVVHLISPNDRYDITYLRNYAVLNVKDRLSRIGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T   +       N      + G    +     Q+
Sbjct: 176 EVQIWGSGSYSMRVWLDPQKVAQRGLTATDVVNAIREQNVQVAAGVIGASPTQGDVPMQF 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I           
Sbjct: 236 SVNAQGRLQNE-------------TEFGNIILKSSPDGAVTRLSDVARIELGAQEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L A   P     +E         S   
Sbjct: 283 LLNNKPAIGMGIMQSPGANALDVSAQVRETMKELSADFPPGLEYRIEYDPTQFVRSSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T +LL L G ++   S+ G+V
Sbjct: 343 VISTLLEAIALVVLVVIVFLQTWRASIIPLLAVPVSIVGTFSLLLLFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +           I    +T     V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAAGLTPREATYRAMREVSGPIIAIALTLCAVFVPLAFMT 462

Query: 482 GGAVRGFAITMGLSILISMFTAI-SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G + + +        + ++ +A  S+  +  +  +  K               +      
Sbjct: 463 GLSGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLKGHHDKPDWLTRGMNRVFGGFFN 522

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
            F R                I         Y +     + +  L       +  +  L  
Sbjct: 523 WFNRFFGRASDSYATGITGVIRRKGGAMAVYAVLLAATVGISYLVPGGFVPAQDKQYLIG 582

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                        E            +   ++ +              S       + P 
Sbjct: 583 FAQLPNGASLDRTEDVIRRMSDIALKEPGVESAIAFPGLSINGFTNSSSAGIVFVTLKPF 642

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             R         +  S  A    I   F   F    +  L
Sbjct: 643 DERHSAELSGNAITGSLNAKFASIKDAFIAVFPPPPVMGL 682



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILAALTGVWLTSGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEMQGSTPLQAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +F+     + +    A+ 
Sbjct: 1019 LGVTLFGLFLTPVFYVLLRTLSARK 1043



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFSLLLLFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                ++ R+   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 425 A---GLTPREATYRAMREVSGPIIAIALTLCAVFVPLAFMTGLSGQFYKQFAMTIAISTV 481

Query: 807 VAASSSI 813
           ++A +S+
Sbjct: 482 ISAFNSL 488


>gi|86153782|ref|ZP_01071985.1| probable aminoglycoside efflux pump [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|85842743|gb|EAQ59955.1| probable aminoglycoside efflux pump [Campylobacter jejuni subsp.
           jejuni HB93-13]
          Length = 1040

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/683 (11%), Positives = 185/683 (27%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  + +S         F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGESFKFVKKFNDFFDWS 521

Query: 537 CIAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    ++  R     +     + +I  L+    N  +  +    + +        S
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEEDQGLM-ISIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
                  K          V + +
Sbjct: 641 QIIAELNKKFAFDRNASSVFIGL 663



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|134293642|ref|YP_001117378.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           vietnamiensis G4]
 gi|134136799|gb|ABO57913.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia vietnamiensis G4]
          Length = 1053

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/528 (13%), Positives = 148/528 (28%), Gaps = 40/528 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+  +I   G+L       PQ  + ++P   P               +V+    
Sbjct: 8   RPVFAWIVALVIVVAGVLAI-----PQLPIAQYPRLAPP-------------RVVITAAY 49

Query: 63  DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +        +E             S     N +I ++FA     +     V  
Sbjct: 50  PGASTETVDGDVGSIIEESLDGADGLQYYETSSDGHGNLEIDVTFAPGTDPDIALVDVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L     +  +         ++L           + +    + R  + ++  +
Sbjct: 110 RLKQVEPRLPQQVVQQGIGVFKAANTFLMLVTLTSTDGTRDSAQLGDYLNRYVLRELKRA 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP +LR+       +       N +      G        
Sbjct: 170 PGVGSAQLWDA-DEALRVWLDPGKLREYDLGADDVIAAIAAQNATVTAGAIGDAPSVHGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K +++                +    +   +             +       
Sbjct: 229 QLTATIVVKGQLT-------------TPEEFGRIVLKSKQDGSVVRVADVARVEIGRDDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T        A L     P     +          
Sbjct: 276 SFYSRLNGRPAATVGIQLGPRGNALETSNAIRARLAALSKTLPPGVAIEIPFDGAHFVTI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T A    LV  V+++ +   ++ LV    I + ++     +   G ++ + ++
Sbjct: 336 AIREVVLTLAEAVVLVFCVMWLFLRELRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +      R    I           V +
Sbjct: 396 FGLVLAIGILVDDAIVVVESVHRVMEEGVSPREATRRAMKRIGGAIVGVTAVLTAVFVPM 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            FF G      R FA++M  S+L+S F A+S+  A+   +++    + 
Sbjct: 456 AFFPGSVGGIYRQFAVSMIASMLVSSFMALSLTPALCANLLKPVGRRE 503



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 75/194 (38%), Gaps = 7/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRF 688
             +  +      +++ +P          G       IR+ ++ +  + + +   +W    
Sbjct: 301 ETSNAIRARLAALSKTLPPGVAIEIPFDGAHFVTIAIREVVLTLAEAVVLVFCVMWLFLR 360

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +  + L     + + +         FG+  N+  +  ++  IG  V+D +VV + +    
Sbjct: 361 ELRYTLVPTVVIPVTLMGAFVAMWAFGLSINVFTMFGLVLAIGILVDDAIVVVESVH--- 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           ++    +S R+   +++    G  V  +       +PMA +    G +   FA+ M   +
Sbjct: 418 RVMEEGVSPREATRRAMKRIGGAIVGVTAVLTAVFVPMAFFPGSVGGIYRQFAVSMIASM 477

Query: 806 VVAASSSIFIAAPI 819
           +V++  ++ +   +
Sbjct: 478 LVSSFMALSLTPAL 491



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 80/238 (33%), Gaps = 13/238 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS + +   ++    ++  +     +   R         A   +  +      
Sbjct: 794  RTGDMVPLSAIAAPHWTVGPVMLNRYDGYPSLDISGRAAAHTSSGAAMAEMERLAAMLPA 853

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I         +    +    L+      V +S +A+ + +   ++ W   L  +T + L
Sbjct: 854  GIGYDWVDAARQERIAERQTPLL------VGLSVLAVFMALAALYESWTIPLSVLTIVPL 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   +      G+  ++     ++T+IG S  + +++    R+   L    +  R  + 
Sbjct: 908  GIVGAVAAALARGMPNDVYFKVGMITVIGLSAKNAILIVQFARE---LGGRGVPLRQAVV 964

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            ++        V TSMA  + V+P+ +    G     S       G++ A    +  A 
Sbjct: 965  EAAAARFRPIVMTSMAFLLGVVPLVLATGAGAESRRSIGTGAFGGVLAATVFGLVFAP 1022


>gi|109897065|ref|YP_660320.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Pseudoalteromonas atlantica T6c]
 gi|109699346|gb|ABG39266.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudoalteromonas atlantica T6c]
          Length = 1055

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 143/524 (27%), Gaps = 39/524 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  IG L           ++++P   P               + +    
Sbjct: 10  RPKFASVLAIIVLIIGSLA-----YFSLPVEQYPQIAPPT-------------VQVVASY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                          L   +   E +   S +   +    IT++F      +N   +V  
Sbjct: 52  PGASAEIAAKTVATPLEQEINGVENMLYMSSQSTADGRVTITVTFKLGTDLDNAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L     +  + T       +++               +     Q  DQ+   
Sbjct: 112 RVAIAEPRLPETVSRLGITTKKNSPDLMLVVNMYSPNGTYDQTYIANYAALQIRDQLSRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L        +    DP  +  L  T A++       N            +    
Sbjct: 172 DGVGDILTFGASQYSMRVWLDPDIIASLDMTAAEVVTALRGQNIQVASGTLNQSPVDAGQ 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               L                        +   ++       +         +       
Sbjct: 232 TAFEL-------------NVQTQGQLIEPEEFENVIIKNQDGKIVRLRDVGRVELGAESY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T +        +     P     +          
Sbjct: 279 TTRGYLGDKKAVAMPVFQRPGSNAIETADAIKAAMVEVGKNFPPDLTYEIAYNPTNFISE 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  + T      LV++V+ + +   +  L+   +I ++++ T A+LS  G +L   ++
Sbjct: 339 SITAVEHTIYEAIALVVLVIMVFLQNWRAALIPIIAIPISLVGTFAVLSAFGFSLNNLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +            +     +     +    +  +   +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENMERLMADGMRPLKAARQTMTEVGGAVLAIGLVLVAVFLPT 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
            F     G     F IT+ ++ +IS+  ++ +  A+   + +  
Sbjct: 459 AFVDGISGQFYSQFGITIAVATIISVSVSLILSPAISAVLFKPH 502



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 86/265 (32%), Gaps = 17/265 (6%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  D  G I++   +   V LS V +         +   N     + +         
Sbjct: 780  PYRMEADDIGRIRVRNSSGEMVPLSSVATFEYRSGPSRVPRYNLYPAADLIGSTAPGFSS 839

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY-IWI 686
              A   +  +  + + + +                ++    GI+    + + + +  + +
Sbjct: 840  GEAIATMERLAAEILPDGITY-----EWTELAYQEQQSGSTGILAFGFAVVFVFLLLVAL 894

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRM 744
               W   L  I  + + +   +    L G++ N+     ++ L+G +  + +++  + R 
Sbjct: 895  YESWTLPLSVILIVPMCLLSAIIGVHLMGLDNNILTQVGLIVLVGLASKNAILIVEFARH 954

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
            R+            +    +    L   + TS A  + VLP+A     G  +  +  + +
Sbjct: 955  RE-----HEGAGLYEAASDAAKLRLRPILMTSFAFILGVLPLAAATGAGAEMRQALGVAV 1009

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW 826
              G++      + I  P+   +   
Sbjct: 1010 FSGMLGVTFFGL-IFTPVFYVLMRK 1033



 Score = 44.7 bits (103), Expect = 0.068,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 71/207 (34%), Gaps = 9/207 (4%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                 + A    +  V K     +      N      +    +       + +  + ++
Sbjct: 300 SNAIETADAIKAAMVEVGKNFPPDLTYEIAYNPTNFISESITAVEHTIYEAIALVVLVIM 359

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++     W  AL  I  + + +  T    + FG   N   +  ++  IG  V+D +VV 
Sbjct: 360 VFLQ---NWRAALIPIIAIPISLVGTFAVLSAFGFSLNNLTLFGLVLAIGIVVDDAIVVV 416

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFA 798
           + M    +L    +       +++ E  G  +   +      LP A      G     F 
Sbjct: 417 ENM---ERLMADGMRPLKAARQTMTEVGGAVLAIGLVLVAVFLPTAFVDGISGQFYSQFG 473

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYD 825
           I +A   +++ S S+ ++  I   ++ 
Sbjct: 474 ITIAVATIISVSVSLILSPAISAVLFK 500


>gi|303248549|ref|ZP_07334806.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio fructosovorans JJ]
 gi|302490079|gb|EFL50000.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio fructosovorans JJ]
          Length = 1036

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/529 (12%), Positives = 160/529 (30%), Gaps = 40/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G +  L        + ++P  +P               + +    
Sbjct: 8   RPVFSAVLSIVITLVGAICIL-----TLPIAQYPQIVPPT-------------VQVTATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
           D      ++   +  +   +   + +   +     +    + ++F  SR  +     V  
Sbjct: 50  DGASAQVVEESVATPIEQEVNGAQDMLYMNSVSSNDGRMVLNVTFDISRDLDLATVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   NS+L  +  +  +    +    +++   N        +  +        D +   
Sbjct: 110 RVALANSRLPSEVVRRGISVKKQSPDMLLVINLNSPDGSRDTLFLNNYAKINITDALARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +L  T + ++      N        G+       
Sbjct: 170 PGVGNVAVFGERDYSMRVWLDPDKLARLGLTASDVANAIRQQNVQAPAGQIGMPPAPPGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V+ K  ++                +    I     GA+         +       
Sbjct: 230 EFQLTVQVKGRLA-------------DPEEFADIIVRSGKGAQLVRVRDVGRVDLGSQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +    ++    + A             +          
Sbjct: 277 TAFTRLNGKPTCTIQIFQLPGANALEVVKRIRAIMAEQATYFPSGVAYTIPYDTTKFVNA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVL+V+++ +   +  L+   ++ ++++   A + L G ++   ++
Sbjct: 337 SIHEVIKTLFEAVFLVLLVVYVFLQNARATLIPMLTVPVSLVGAFAFMQLFGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E ++ +          +     +     +   ++  +   V 
Sbjct: 397 FGLVLAIGIVVDDAIVVVEAVQHKIDHEGLPAREATKAAMAEVAGPVVAISLVLISVFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I+R      
Sbjct: 457 VAFMGGVTGRLYQQFALTLAVSVALSAICALTLSPALCALILRPAGTPK 505



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 68/171 (39%), Gaps = 11/171 (6%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            + I    ++ + + + +  +++ W      I  + L +   +G   L G++ N+ A   +
Sbjct: 871  QSIYIFALALVMVFLVLAAQYESWAVPFAVILAVPLAVFGAMGAQMLRGLDNNVYAQIGL 930

Query: 727  LTLIGYSVNDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            + LIG +  + +++  + +MR+         +  +    +        + TS A  + V+
Sbjct: 931  VMLIGLAAKNAILIVEFAKMRREA-----GDAPEEAAVSASRLRFRPILMTSFAFILGVV 985

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            PM V    G +   +    +  G+V A    ++    +  FI     +  R
Sbjct: 986  PMMVATGAGAASRHALGTAVFGGMVAATILGVYFVPALYCFIQRAVERLRR 1036


>gi|256838379|ref|ZP_05543889.1| multidrug efflux membrane fusion protein [Parabacteroides sp. D13]
 gi|256739298|gb|EEU52622.1| multidrug efflux membrane fusion protein [Parabacteroides sp. D13]
          Length = 1011

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 77/605 (12%), Positives = 173/605 (28%), Gaps = 44/605 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G +           +  FPS                 ++      
Sbjct: 11  RPVLSTVMMLVILLFGFI-----GYRFLGVREFPSVDQPII---------SVNVSYPGAN 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    ++  + +           Q  ++IT+ F  S   E  A+ V   +   
Sbjct: 57  ADVIMNQITEPLEQNINGIPGIRSLSSVSSQGSSRITVEFELSVDMETAANDVRDKVSRA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D     +         I+      +      +E S        +++   E+   
Sbjct: 117 QRYLPRDCDPPTVSKADADASPIMQIAIRSN--KRSLMELSEIAELTVKERLQTIENVSG 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +    +    DP ++     T   +       N            +  S     L
Sbjct: 175 VDIWGQKRYSMRLWLDPIKMAGYGVTPMDVKNAVDNENVELPSGSIEGNTISLSIRTLGL 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                 T K   D+   E                    +     
Sbjct: 235 --------------------MHTAKEFNDLIIKEDNNNIVRFSDIGRAEVAPEDLRSLLK 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   +   +     + A      L+          +   N      S S  
Sbjct: 275 KNGEPMVMTVIIPQPGANHIEIADEAYKRIEQLQKDLPEDVTIEMMYDNTRFIRASISEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      LV++++F+ +   +  LV    I ++++    ++ + G ++ + ++  +VL
Sbjct: 335 QQTIYEAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYISGFSINVLTMLAVVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL VD  I+V E I     +  S   +   G    +  +  + IT +   + + F  G
Sbjct: 395 SVGLVVDDAIVVAENIYVRIEQGMSPKEAGIEGSKEIFFAVVSTTITLISVFLPIVFMEG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 + F+I +  S+ IS F A++    +   +++ ++ K+        FF   + I 
Sbjct: 455 MTGRLFKEFSIVIAGSVAISSFVALTFTPMLATKLLKRREKKNWFYRKTEPFFEGLNTIY 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNY-----GIDFKGGIQLGVLANRPVDLSVV 594
            + + A       SI   I     +     N       ++ +  I + +          +
Sbjct: 515 AKSLNAFLNHKIWSIPIVILLFGSIGYFWKNIRSELSPLEDRSMISVNMRGPEGATFEFI 574

Query: 595 RSNLE 599
           R   +
Sbjct: 575 RDYAD 579



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 74/165 (44%), Gaps = 7/165 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  +I++ + + + +  +F+ +   L  + T+ L I   L F +  GI  N+ +   ++ 
Sbjct: 847  MFAMILALLMIYLVLAAQFESFKDPLVVMFTVPLAIAGALMFMSYSGITMNIFSQIGIIM 906

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +   + +S  + I  S  + L   + TS++  + ++P+  
Sbjct: 907  LIGLVAKNGILIVEFAN---QRQESGLSLPEAIRSSATQRLRPILMTSVSTILGLVPLVY 963

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              G          + +  G++V+   ++FI   +  FI   R KN
Sbjct: 964  ATGEGAQGRIAMGVAVVGGMLVSTFLTLFIVPAMYSFISTNRKKN 1008



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 79/240 (32%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ +    +  +  +N +     ++  Q             + +++   ++    TI+  
Sbjct: 261 RAEVAPEDLRSLLKKNGEPMVMTVIIPQPGANHIEIADEAYKRIEQLQKDLPEDVTIEMM 320

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + +LI       W   L  +  + + +        + 
Sbjct: 321 YDNTRFIRASISEVQQTIYEAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYIS 380

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+  + AV+  +G  V+D +VV + +          +S ++   +   E     V 
Sbjct: 381 GFSINVLTMLAVVLSVGLVVDDAIVVAENI---YVRIEQGMSPKEAGIEGSKEIFFAVVS 437

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++      LP+    G        F+I +A  + +++  ++     +   +   R K  
Sbjct: 438 TTITLISVFLPIVFMEGMTGRLFKEFSIVIAGSVAISSFVALTFTPMLATKLLKRREKKN 497


>gi|270261371|ref|ZP_06189644.1| hypothetical protein SOD_a06010 [Serratia odorifera 4Rx13]
 gi|270044855|gb|EFA17946.1| hypothetical protein SOD_a06010 [Serratia odorifera 4Rx13]
          Length = 1047

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 55/507 (10%), Positives = 133/507 (26%), Gaps = 36/507 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++       P   +  +P  +P               + +    
Sbjct: 10  RPIFAAVLSILIFVGGVIAI-----PLLPISEYPDVVPP-------------SVQVRAQY 51

Query: 63  DDFV-NGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                    +  +  L   +     +         + +   T++F      +    +V  
Sbjct: 52  PGANPKEIAETVATPLEEAINGVEHMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  D ++  + T  +     ++           ++        +  D++   
Sbjct: 112 RVAQAEARLPEDVRRQGVTTQKQSPALTLVVHLVSPSGKYDSLYLRNYATLKVKDELARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP+++     T + +       N        G   + +  
Sbjct: 172 PGVGQVQIFGAGEYAMRVWLDPNKVASRGLTASDVVTAMQEQNVQVSAGQLGAEPMPNRS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                 I       
Sbjct: 232 DYLLSINAQGRLQTEE-------------EFGNIILKSGDNGEIVRLRDVARIEMGSGSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L                      
Sbjct: 279 ALRAQLNNKDAVGIGIFQAPGANAIELSDAVRAKMAELSTRFPDGMSWKSPYDPTVFVRD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   ++ ++++ T A L LLG +L   S+
Sbjct: 339 SIRAVVDTLLEAVLLVVLVVILFLQTWRASIIPLLAVPISIVGTFAALYLLGFSLNTLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +           I    +      V +
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIAVVLCAVFVPM 458

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAI 504
            F  G   + +        + ++ +AI
Sbjct: 459 AFLSGVTGQFYKQFAVTIAISTVISAI 485



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 56/147 (38%), Gaps = 8/147 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L     S  +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LELQGKSIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFAG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++      +F+     + +     + A
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRRMVTRKA 1042



 Score = 45.8 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPISIVGTFAALYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 425 E---GLSPLAAAHQAMREVSGPIIAIAVVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASSS 812
           ++   S
Sbjct: 478 ISTVIS 483


>gi|262382787|ref|ZP_06075924.1| multidrug efflux membrane fusion protein [Bacteroides sp. 2_1_33B]
 gi|262295665|gb|EEY83596.1| multidrug efflux membrane fusion protein [Bacteroides sp. 2_1_33B]
          Length = 1010

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 75/571 (13%), Positives = 164/571 (28%), Gaps = 39/571 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G +           +  FPS                 ++      
Sbjct: 11  RPVLSTVMMLVILLFGFI-----GYRFLGVREFPSVDQPII---------SVNVSYPGAN 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    ++  + +           Q  ++IT+ F  S   E  A+ V   +   
Sbjct: 57  ADVIMNQITEPLEQNINGIPGIRSLSSVSSQGSSRITVEFELSVDMETAANDVRDKVSRA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D     +         I+      +      +E S        +++   E+   
Sbjct: 117 QRYLPRDCDPPTVSKADADASPIMQIAIRSN--KRSLMELSEIAELTVKERLQTIENVSG 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +    +    DP ++     T   +       N            +  S     L
Sbjct: 175 VDIWGQKRYSMRLWLDPIKMAGYGVTPMDVKNAVDNENVELPSGSIEGNTISLSIRTLGL 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                 T K   D+   E                    +     
Sbjct: 235 --------------------MHTAKEFNDLIIKEDNNNIVRFSDIGRAEVAPEDLRSLLK 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   +   +     + A      L+          +   N      S S  
Sbjct: 275 KNGEPMVMTVIIPQPGANHIEIADEAYKRIEQLQKDLPEDVTIEMMYDNTRFIRASISEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      LV++++F+ +   +  LV    I ++++    ++ + G ++ + ++  +VL
Sbjct: 335 QQTIYEAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYISGFSVNVLTMLAVVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL VD  I+V E I     +  S   +   G    +  +  + IT +   + + F  G
Sbjct: 395 SVGLVVDDAIVVAENIYVRIEQGMSPKEAGIEGSKEIFFAVVSTTITLISVFLPIVFMEG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 + F+I +  S+ IS F A++    +   +++ ++ K+        FF   + I 
Sbjct: 455 MTGRLFKEFSIVIAGSVAISSFVALTFTPMLATKLLKRREKKNWFYRKTEPFFEGLNTIY 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLN 570
            + + A       SI   I     +     N
Sbjct: 515 AKSLNAFLNHKIWSIPIVILLFGSIGYFWKN 545



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 73/166 (43%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  +I++ + + + +  +F+ +   L  + T+ L I   L F +  GI  N+ +   ++ 
Sbjct: 847  MFAMILALLMIYLVLAAQFESFKDPLVVMFTVPLAIAGALMFMSYSGITMNIFSQIGIIM 906

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +   + +S  + I  S  + L   + TS++  + ++P+  
Sbjct: 907  LIGLVAKNGILIVEFAN---QRQESGLSLPEAIRSSATQRLRPILMTSVSTILGLVPLVY 963

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G          + +  G++V+   ++FI   +  FI   R K  
Sbjct: 964  ATGEGAQGRIAMGVAVVGGMLVSTFLTLFIVPAMYSFISTNRKKQN 1009



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 79/240 (32%), Gaps = 6/240 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ +    +  +  +N +     ++  Q             + +++   ++    TI+  
Sbjct: 261 RAEVAPEDLRSLLKKNGEPMVMTVIIPQPGANHIEIADEAYKRIEQLQKDLPEDVTIEMM 320

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +            + +LI       W   L  +  + + +        + 
Sbjct: 321 YDNTRFIRASISEVQQTIYEAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYIS 380

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+  + AV+  +G  V+D +VV + +          +S ++   +   E     V 
Sbjct: 381 GFSVNVLTMLAVVLSVGLVVDDAIVVAENI---YVRIEQGMSPKEAGIEGSKEIFFAVVS 437

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++      LP+    G        F+I +A  + +++  ++     +   +   R K  
Sbjct: 438 TTITLISVFLPIVFMEGMTGRLFKEFSIVIAGSVAISSFVALTFTPMLATKLLKRREKKN 497


>gi|189468230|ref|ZP_03017015.1| hypothetical protein BACINT_04626 [Bacteroides intestinalis DSM
           17393]
 gi|189436494|gb|EDV05479.1| hypothetical protein BACINT_04626 [Bacteroides intestinalis DSM
           17393]
          Length = 1010

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/687 (12%), Positives = 194/687 (28%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   G++           +  +PS                        
Sbjct: 9   RRPVLSTVLTLIILLFGII-----GYSYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q  ++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGSSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +       + I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADAMPILMVALQSD--KRSLLELSEIADLTVKEQLQTIADVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N            +  +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPIDVKNAVDKENVELPSGSIEGNTVELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E   R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLILREDNNRIVRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S   
Sbjct: 273 KMNGVPMVGIVVIPQPGANHIKIADAVYERMKQMKKDLPEDVQYSYGFDNTKFIRASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+I++F+ +   +  LV    I +++I    ++ L G ++ + S+  +V
Sbjct: 333 VKETVYVAFILVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIERGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMD 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ K+        FF   + I
Sbjct: 453 GMTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLVKQEKKNWFYIKTEPFFEGMNRI 512

Query: 539 AIQ----FMRARFWGVGISI-LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+R R+  + + +    I              ++ +  I +       V    
Sbjct: 513 YSRSLEIFLRKRWLAMPLVLGTLFIIVFLWNAIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISF---------QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S          +   G  N  + L+        Q  V E + + + +
Sbjct: 573 IRDYTEDINQLVDSILPDAESVTARVSSGSGNVRITLKDMKDRDYTQMEVAEQISRAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTKARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 57/147 (38%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   L F     I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPLIIMLTVPLAIAGALVFMYFGDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +         + I  +  + L   + TS +  + ++P+A   G            +  G+
Sbjct: 923  QKQEAGEDKMEAIKDASLQRLRPILMTSASTILGLIPLAFASGEGCNQRIAMGTAVVGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   +++I   I  +I   R+K  +
Sbjct: 983  LVSTFLTMYIVPAIYSYISTNRSKLKK 1009



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        L G   N+ ++ AV+  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLVPCIVIPVSLIGAFFVMYLAGFSINVLSMLAVVLAVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +  ++   +   E     + T++       P+    G        F+I ++  
Sbjct: 410 YVRIERGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMDGMTGRLFREFSIVVSGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   + K  
Sbjct: 470 VIISSFAALTFTPMLATKLLVKQEKKN 496


>gi|99078396|ref|YP_611654.1| hydrophobe/amphiphile efflux-1 HAE1 [Ruegeria sp. TM1040]
 gi|99035534|gb|ABF62392.1| Hydrophobe/amphiphile efflux-1 HAE1 [Ruegeria sp. TM1040]
          Length = 1042

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/536 (12%), Positives = 151/536 (28%), Gaps = 42/536 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL+      +    + ++P   P               + +   
Sbjct: 8   RRPRLAMVISIVITIAGLIA-----MSAIPVAQYPEIAPPT-------------VQVSAS 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++      + S +    G+              +T+SF      +     V 
Sbjct: 50  YSGADTATVEEAIAVPIESQVNGVSGMRYMRSNSNNAGEYSLTVSFELGEDPDLATVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++    +L    +   L         + +   + D      +  +  +    ID++  
Sbjct: 110 NRVKLAEPRLPQAVRDQGLQIKKASTDILQVFTFHSDDPAHDQLFLANFVAINIIDELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-LRD 235
            +              +    DP ++     +   +       +        G    + D
Sbjct: 170 IDGVGDVFNYGVRDYAMRIWLDPQKMSDREMSVDDIVSAIRSQHLQASAGRIGAAPLVED 229

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G Q  +  K +++                +    I   E             +    A
Sbjct: 230 GAGLQMTIVTKGKLTSAD-------------EFENIILRSETDGSFVRVKDVARVELGAA 276

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                                   +     ET       L+                   
Sbjct: 277 TYDVETRFEGTPSAPIAVFLSPGANAVAVAETVRHKLEELQERFPDGVSYSFIYDTAEFV 336

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
                  + T      LV IV+F+ +   +  L+   ++ ++++ T A+L  LG +    
Sbjct: 337 EAMIKKVEHTLIEAFVLVGIVVFVFLGRLRPTLIPLIAVPVSIVGTFAVLLALGYSANTI 396

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENR--KNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           S+  ++L IG+ VD  I+V E + +      + S   +           I    +  L  
Sbjct: 397 SLLAMILAIGIVVDDAIVVVENVEKVMHEEPHLSPADATRKAMKEITGPIIAITLVLLSV 456

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            V + F  G +    R FA+T+  +++IS   A+++  A+   +++  +       
Sbjct: 457 FVPVAFLPGSSGVLFRQFAVTISAAMVISAINALTLSPALCAILMKPGEPIRFMRR 512



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 92/243 (37%), Gaps = 5/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V          D+  +        +        ++VA    +    +++ E  
Sbjct: 261 SFVRVKDVARVELGAATYDVETRFEGTPSAPIAVFLSPGANAVAVAETVRHKLEELQERF 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P     +      +    +I+K    +I + + + I +++   +    L  +  + + I 
Sbjct: 321 PDGVSYSFIYDTAEFVEAMIKKVEHTLIEAFVLVGIVVFVFLGRLRPTLIPLIAVPVSIV 380

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N  ++ A++  IG  V+D +VV + + + +      +S  D   K++
Sbjct: 381 GTFAVLLALGYSANTISLLAMILAIGIVVDDAIVVVENV-EKVMHEEPHLSPADATRKAM 439

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  +  ++      +P+A   GS       FA+ ++  +V++A +++ ++  +   
Sbjct: 440 KEITGPIIAITLVLLSVFVPVAFLPGSSGVLFRQFAVTISAAMVISAINALTLSPALCAI 499

Query: 823 IYD 825
           +  
Sbjct: 500 LMK 502



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 73/241 (30%), Gaps = 4/241 (1%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +         V  S+  + ++   +           V +   P   V     +  +++  
Sbjct: 785  IRIRNASGEMVPVSSFATARLESGTRSQVRYNNYRAVAINGSPAAGVGDGDAITAMEEIG 844

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
               +P         +  ++     + GIV       A L  + +   W   +G + +++ 
Sbjct: 845  AATIPDGFAYEWTGMASEVKSSAGQTGIVLGFALLFAYLFLVALYESWNVPVGVMLSVVA 904

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    + G   ++     ++ LI  +  + +++ +     +       S  D   
Sbjct: 905  AVMVAIFGVWVAGSSLDVYVQIGIVVLIALAAKNAILIVEFA---LLRLGEGKSIEDAAA 961

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                E     + TS A    ++P+    G    S    +   +      S  I   ++  
Sbjct: 962  LGAQERFRPVMMTSFAFIAGLVPLVTASGPGADSM-FAVGVPVFAGMIGSAVIGVILIPL 1020

Query: 823  I 823
            +
Sbjct: 1021 L 1021


>gi|329965209|ref|ZP_08302140.1| putative multidrug efflux pump BpeF [Bacteroides fluxus YIT 12057]
 gi|328523572|gb|EGF50669.1| putative multidrug efflux pump BpeF [Bacteroides fluxus YIT 12057]
          Length = 1037

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 94/694 (13%), Positives = 210/694 (30%), Gaps = 48/694 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++           ++++P   P   I+                 
Sbjct: 9   RPVFSGVISVVIVLLGMISMF-----SLPVEQYPDIAPPT-IN--------VFATYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +E  + ++       +        I + F      +  A  V   + G
Sbjct: 55  AETVQKAVITPLEEAINGVEDMTYMTSTASNTGDASINIYFKQGTNADMAAVNVQNRVNG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +  K  + T  ++   ++                +  +      ++       
Sbjct: 115 ALSQLPAEATKTGVTTEKQQNAELMTFALYSPDDRFDQTFLNNYLKINVEPRLKRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P ++ Q       +S      N       FG         N+Y
Sbjct: 175 KAQLFGS-NYSMRLWLRPDKMAQYGLIPDDISTVLARQNIEAATGSFGANHPT---ANEY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +SG               +    +     G          ++           
Sbjct: 231 TMKYRGRLSGAE-------------EFGELVIKSLPGGNVLRLKEVADVELGDEYYNYSS 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        + + KA  + + TI+    +   L          +V          S + 
Sbjct: 278 EVNGHPAAMMLINQKAGSNASSTIKEIHEVLDDLSRDLPEGTEFVVLTDTNKFLYASINS 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   K  L+   SIF+++I T A++S++G ++ L ++  +V
Sbjct: 338 VIRTLIEAILLVIVVVYVFLQDIKSTLIPTISIFVSIIGTFAVMSMIGFSVNLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++ +  +   S   + D       S I  S I  +     +   
Sbjct: 398 LAIGTVVDDAIVVVEAVQAKFDEGYQSAVLAADDAMKGVSSAILTSTIIFMAVFFPVAMM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------------IRYKKMKSIDI 525
           GG +      F ITM +++ IS   A ++  A+   +              +        
Sbjct: 458 GGTSGAFYTQFGITMAVAVGISAVNAFTLSPALCALLLKPYIDEQGNTKNNFAARFRKAF 517

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           N +           + F+  R W +   I  S   + LL        I  +    + V  
Sbjct: 518 NAVFDRLSRRYVRGVMFIIHRRWLLWSIIGISFGLLVLLVNVTKTGLIPEEDTGTVMVSM 577

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           N     S+ +++    +I        + E +  V      G   +Q      +K      
Sbjct: 578 NTKPGTSMAQTSKVMERINSRLDSIGEIEYSGAVAGFSFSGSGPSQAMYFVTLKDWEQRK 637

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
               ++ +        + ++    +  +    IA
Sbjct: 638 GEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIA 671



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ + I  T    ++ G   NL  + A++  IG  V+D +VV + ++   
Sbjct: 359 DIKSTLIPTISIFVSIIGTFAVMSMIGFSVNLLTLFALVLAIGTVVDDAIVVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                S       D ++       + +++       P+A+ GG+       F I MA  +
Sbjct: 419 DEGYQSAVL--AADDAMKGVSSAILTSTIIFMAVFFPVAMMGGTSGAFYTQFGITMAVAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A ++  ++  +   +  
Sbjct: 477 GISAVNAFTLSPALCALLLK 496



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/418 (9%), Positives = 117/418 (27%), Gaps = 21/418 (5%)

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +  +     ++  + +    S++    + Y+   D     + A       G G   GF +
Sbjct: 622  SQAMYFVTLKDWEQRKGEGQSVNDVIGKIYAATSDIPDATVFAMSPPMIAGYGMGNGFEL 681

Query: 491  TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +      ++          +  + +  ++  +  +  + +      I            
Sbjct: 682  YLQDKAGGNIAAFKEEADKFVEALSQRPEIGEVYSSFATDYPQYWVDIDAAKCEQSGVSP 741

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF-- 608
               +          +    N        + +   A   V+   +         G +S   
Sbjct: 742  ADVLSTLSGYYTGQYVSDFNR-FSKLYHVTMQAPAEYRVNAESLHHMYVRATDGGMSPLS 800

Query: 609  -----QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                    +G  +      +                + +  I   +          +   
Sbjct: 801  RFVRLTKTNGPSDLTRFNLFNAISISGSPAQGYSSGQVLEAIGETAREVLPSNYTYEFGG 860

Query: 664  ELIRKGIV---GVIISAIAM----LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                +        +I  + M    LI   +    +     + ++   +  +  F  LFG+
Sbjct: 861  ISREESKTTNNATLIFLLCMVLVYLILCALYESVFIPFAVLLSVPCGLMGSFLFAWLFGL 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            E N+     ++ +IG      +++ +      K  +  ++       +    L   + T 
Sbjct: 921  ENNIYMQTGLIMIIGLLAKTAILLTE---YAGKRRSEGMTLAQAAYSAAKVRLRPILMTV 977

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++    ++P+ +    G +   S A  +  G++V   + +F+   + +     + +  
Sbjct: 978  LSMVFGLVPLMMAHGVGANGSRSLATGVIGGMIVGTLALLFLVPSLFIVFQYIQERVK 1035


>gi|330809922|ref|YP_004354384.1| RND multidrug efflux transporter MexF [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327378030|gb|AEA69380.1| putative RND multidrug efflux transporter MexF [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1059

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/595 (11%), Positives = 158/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVTAIREQNRQVAAGALGAPPAPNAQAFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    +      
Sbjct: 236 SINTQGRLVNEE-------------EFENIIIRSGANGEITRLKDIARVELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +              L+ G        +         GS   
Sbjct: 283 LLDNQPAVAIPIFQRPGSNAIQISNDVREKMEELKKGFPAGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+V
Sbjct: 343 VVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLTPVEATKRAMGEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF---FLIP 535
              G   + FA+T+ +S +IS   ++++  A+   +++         +          + 
Sbjct: 463 GLTGQFYKQFALTIAISTVISAVNSLTLSPALAAVLLKGHDAPKDRFSKFLDKLFGGWLF 522

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F RA    VG        S   L  +     + F G            D
Sbjct: 523 RPFNRFFERASHGYVGTVARVIRSSGIALVLYAGLMVLTFFGFSTTPTGFVPGQD 577



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 75/216 (34%), Gaps = 10/216 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS---- 676
            +  +   + A        +K I +++              ++ + I  G   + +     
Sbjct: 831  ITAEINGAAAPGYSSGQAEKAIEKLLKDELPNGMTYEWTDLTYQQILSGNTALFVFPLCV 890

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +A L+       W   L  I  + + +   +    L G + N+     ++ L+G +  +
Sbjct: 891  LLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVILSGGDNNIFTQIGLIVLVGLACKN 950

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ +  +         ++    + ++    L   + TS A  + V+P+      G  +
Sbjct: 951  AILIVEFAKD---KQLEGMNPLAAVLEACRLRLRPILMTSFAFIMGVVPLVFSSGAGAEM 1007

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  + +  G++      + +     + I ++  +
Sbjct: 1008 RHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNFVER 1043



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 87/236 (36%), Gaps = 17/236 (7%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L++     I      G     +    +      +      +   I     +    
Sbjct: 279 ALRSLLDNQPAVAIPIFQRPGSNAIQISNDVREKMEELKKGFPAGMDYSIVYDPTIFVRG 338

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E V   +   LI   +V ++               W  ++  +  + + +  T     
Sbjct: 339 SIEAVVHTLFEALILVVLVVIL-----------FLQTWRASIIPLVAVPVSLIGTFAVMH 387

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG   N  ++  ++  IG  V+D +VV + + +N++L    ++  +   +++ E  G  
Sbjct: 388 LFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIEL---GLTPVEATKRAMGEVTGPI 444

Query: 773 VYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + T++      +    + G  G     FA+ +A   V++A +S+ ++  +   +  
Sbjct: 445 IATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAVNSLTLSPALAAVLLK 500


>gi|78066238|ref|YP_369007.1| multidrug efflux protein [Burkholderia sp. 383]
 gi|77966983|gb|ABB08363.1| Hydrophobe/amphiphile efflux-1 pump, HAE1 [Burkholderia sp. 383]
          Length = 1045

 Score =  173 bits (438), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/612 (10%), Positives = 166/612 (27%), Gaps = 41/612 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G             + ++P   P              +       
Sbjct: 8   RPVFAWVIAIFIMLGGAFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLMYTSATSSAGMASLYLTFKQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      +   ++     D     A++         +  +   E   +
Sbjct: 114 EARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTAVQLGEYASANVVQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++     T + ++      N        G   +  +      
Sbjct: 174 VQVWGT-EYAMRIWPDPVKMAGHGLTASDIASAVRAHNARVTIGDIGRTAVPANAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +      +      I            
Sbjct: 233 VFADAPL-------------KTPADFGAIALRTQADGSALYLRDVARIEFGGNDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L A         +          S +  
Sbjct: 280 VNGKVATGMGIKLAPGSNAVSTEKRVRATMDELSAYFPSGVKYQIPFETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+    + + +  T  ++   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      + + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEGLGPYDATVKAMKQISGAIIGITVVLTSVFLPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+++ +SI  S F A+S+  A+   +          +       +    +
Sbjct: 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVSGDHHEKRGFFGWFNRFVAN 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   W V    L  + ++ L          + +G   + V+  +  
Sbjct: 520 STQRYATRVGAMLKKPVRWLVVYGALTGVAALMLTQLPTAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESL 601
            L+    +++ +
Sbjct: 580 PLAETMQSVQEV 591



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 71/202 (35%), Gaps = 8/202 (3%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                   ++ +       V       T         +++   I   ++  + M +++  
Sbjct: 301 TEKRVRATMDELSAYFPSGVKYQIPFETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ- 359

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                  L     + + +  T G     G   N+  +  ++  IG  V+D +VV + +  
Sbjct: 360 --NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENV-- 415

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    +   D   K++ +  G  +  ++      LPMA +GG+V      FA+ +A 
Sbjct: 416 ERLMVEEGLGPYDATVKAMKQISGAIIGITVVLTSVFLPMAFFGGAVGNIYRQFALSLAV 475

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            I  +A  ++ +   +   +  
Sbjct: 476 SIGFSAFLALSLTPALCATLLK 497



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 71/210 (33%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           I  +              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAAGHSSGEAMTAIERLAGKLPAGTGFSWSGQSFEERLSGAQAPMLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W      +  + L +   +    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRMMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ +  +    L    +S  D   ++    L   V TS+A  + VLP+A   G+  G+  
Sbjct: 938  LIVEVAKD---LVAQRMSLVDAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQM 994

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +  G++ A   ++F+     + +  
Sbjct: 995  AIGTGVLGGVITATVLAVFLVPLFFVIVGR 1024


>gi|46446185|ref|YP_007550.1| multidrug ABC transporter [Candidatus Protochlamydia amoebophila
           UWE25]
 gi|46399826|emb|CAF23275.1| probable multidrug-efflux transport protein, acrB [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 1037

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/585 (12%), Positives = 163/585 (27%), Gaps = 40/585 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL       L    ++++P+  P               + +    
Sbjct: 9   RPIFAFVLSIIITLAGLFA-----LRMLPIEQYPNITPP-------------QIQVTASY 50

Query: 63  DDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTL 117
                  +        ++L + ++             +  +++ F      +     V  
Sbjct: 51  AGADASTVAASVAAPIEQLVNGVEDMIYMYSQNSSNGDIALSIFFEIGSNIDMAQVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +    +    + L            I  S       +D+I   
Sbjct: 111 RVNMALPQLPEEVQRTGVQIKKQTPNILQLVAIQSPDQRYDNIFVSNYTTINVVDEILRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +  +     +     P RL QL  TT  +       NN+    + G      S 
Sbjct: 171 PGISNAMIVNARDYSMRIWLRPDRLAQLQLTTHDVIKAVQAQNNNFTAGLLGYPPTNSST 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                 +    A  
Sbjct: 231 QLTVPLTGQGRLDN-------------PKQFENIILRANNDGSYVQIKDVGRVELGAATY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +              L           +          
Sbjct: 278 DVDGSLNGKTTSMIAIYPLFGANALEVAGEVRKTMERLSKNFPEGLEYTIPYDTTDFITA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T    A LV +V+ + +   +  L+   ++ ++++ T A + +LG +L   ++
Sbjct: 338 SIHEVTKTIFEAAILVSLVVLIFLQNLRATLIPIIAMIVSIVGTFAGMYVLGFSLNTLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS----TIFDSNITALIA 473
            G+VL IG+ VD  I+V E +    R+ + +  +         S     I        I 
Sbjct: 398 FGMVLAIGIVVDDAIVVIENVERNMRELKLLPRAAAHKAMEEVSGPVVAIVFVLCAVFIP 457

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   + FAIT+ +S++IS F A+++  A+   I++     S      ++ F 
Sbjct: 458 VAFLGGIAGQLYKQFAITISVSVVISGFVALTLSPALAALILKPHTSPSRFSLLFNKGFD 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                 +   +         +L     I +L          F   
Sbjct: 518 AFTNGYMHITKWILNHAWAGLLLFTSVITILVILNHVIPTSFIPQ 562



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/440 (10%), Positives = 124/440 (28%), Gaps = 18/440 (4%)

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS--LDMGFSRAYSTIFD 465
            +     + S+ G  L   L           ++  +++   V  +  +    ++ YSTI D
Sbjct: 597  IPGVENMVSLTGFSLLESLNRLQMGTNFITLKNWDQRRTPVLQAGAIQAALNKKYSTISD 656

Query: 466  SNITALIATVVLFFFGGGAVRGF------AITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            + I       +      G    +           L  +   F A +  R  +  +    +
Sbjct: 657  AQIMTFNPPAIQGLGTVGGFEFWIENRGDGDIQALETVTQNFIAKARGRPELQGLTTSIQ 716

Query: 520  MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
              ++ +      +             +   + +  L+            +N   +     
Sbjct: 717  TNNMQLYVDLDRYKAETLGVTISEVFQTLQIFLGSLYINNFNKFGRVFQVNVQAEPTYRS 776

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L  L +  V             +     +  +    F      +     A         
Sbjct: 777  NLQNLEDMYVRSIHNEMVPLKSFLSTHYTKGANLVSRFNGFTSAKIIGGAAPGYSSGQAM 836

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVG----VIISAIAMLIYIWIRFKWYFALG 695
              + ++      +         + +  + G       +I   +  LI   +  +W     
Sbjct: 837  AAMEQLAKEELPEQMTYAWSGEAYQEKKTGGTSTNVLLIGVLMVFLILSALYERWSLPFA 896

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             I  +   +        + GI  ++     ++TLI  S  + +++ +     +      +
Sbjct: 897  IILAVPFGLMGAFLAIWIRGISNDVYFNVGLVTLIALSAKNAILIVEFA---IIKREEGL 953

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
            S  +   ++        + TS+   + V P+ +    G +   S    +  G++ A   +
Sbjct: 954  SVLEAAMEAAKLRFRAILMTSLTFILGVFPLVISSGAGAASRHSVGTGVFGGMIAATILA 1013

Query: 813  IFIAAPILLFIYDWRAKNAR 832
            +F+   +   I     K  +
Sbjct: 1014 VFLVPLLYKLIDQRIEKKEK 1033



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 85/243 (34%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V          D+         + +        +++     +    +++++  
Sbjct: 260 SYVQIKDVGRVELGAATYDVDGSLNGKTTSMIAIYPLFGANALEVAGEVRKTMERLSKNF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P                  I +    +  +AI + + + I  +     L  I  +I+ I 
Sbjct: 320 PEGLEYTIPYDTTDFITASIHEVTKTIFEAAILVSLVVLIFLQNLRATLIPIIAMIVSIV 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     + G   N   +  ++  IG  V+D +VV + + +NM+     +  R    K++
Sbjct: 380 GTFAGMYVLGFSLNTLTLFGMVLAIGIVVDDAIVVIENVERNMREL--KLLPRAAAHKAM 437

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E  G  V          +P+A  G   G +   FAI ++  +V++   ++ ++  +   
Sbjct: 438 EEVSGPVVAIVFVLCAVFIPVAFLGGIAGQLYKQFAITISVSVVISGFVALTLSPALAAL 497

Query: 823 IYD 825
           I  
Sbjct: 498 ILK 500


>gi|168702181|ref|ZP_02734458.1| RND multidrug efflux transporter MexF [Gemmata obscuriglobus UQM
           2246]
          Length = 1135

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/528 (12%), Positives = 149/528 (28%), Gaps = 47/528 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  M    GL+      L    + ++P   P      G+              
Sbjct: 9   RPIFAAVLAIMTVLAGLV-----GLDSRPVAQYPDITPPTVEVYGI-------------Y 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  +   +   E +   S     +    +T++F            V  
Sbjct: 51  PGANARDVSETVASPIEQQVNGVEDMMYMSSTCGNDGSYTLTVTFKPGIDLNIAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH--------AIEQSMEIIRQ 169
            +      L    K+  +    +    +++                    ++ S     Q
Sbjct: 111 RVNLAEPVLPDIVKRRGVTVKKKSPSQLMIINLYNTADAPADERERQTVLLQLSNYATIQ 170

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
             D++   +         +    +    DP  +     +TA +       N        G
Sbjct: 171 LRDELARLQGVGDITYLGQRDYSMRLWLDPELMAVKGLSTADVLHAVEQQNAQVAAGQVG 230

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                     QY +     ++                +    I   +  +R         
Sbjct: 231 QPPAPRGQAFQYTINTLGRLT-------------DAGQFGDIIIKADADSRPVRLKDVGR 277

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +                             +   T        A L+A         +  
Sbjct: 278 VELGALSYDQSCTFDGKPSVALAVYQLPGTNAIDTARRVREKMAELKARFPAGVEYQIAY 337

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   S S    T      LV +V+ + +   +  ++   ++ + ++ T A ++ LG
Sbjct: 338 DTTPFIDESISEVFKTLRDAVVLVALVMLVFLQSWRAAIIPLAAVPVAIVGTFAAMAALG 397

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS-LDMGFSRAYSTIFDSNI 468
            ++   ++ G+VL +G+ VD  I+V E ++           + +      +   I    +
Sbjct: 398 YSVNNLTLFGLVLAVGIVVDDAIVVVEAVQHHIEHGLEPRAATIKALDEVSGPVIAVGLV 457

Query: 469 TALIATVVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + +    +F  G  G   R FA+T+ +S L+S F ++++  A+   +
Sbjct: 458 LSAVFVPCVFITGIVGEFYRQFAVTIAVSTLLSAFNSLTLSPALCALL 505



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 56/149 (37%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L  I  + + I    LG  A   ++ N+      + L+G +  + +++ +  +  
Sbjct: 989  SWALPLAVILVVPMCILSAALGVLA-ARLDVNIFTQVGFVVLVGLACKNAILIVEFAK-- 1045

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
             +      S  +   ++    L   V TS+A  I V+P+ +    G  +  +    +  G
Sbjct: 1046 -QKADAGASRWEAALEACKLRLRPIVMTSVAFIIGVVPLVLAEGAGAEMRRALGTAVFAG 1104

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++   +  +F+     + +        R+
Sbjct: 1105 MLGVTAFGLFLTPVFFVELDRLTTAVRRL 1133



 Score = 39.3 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 53/137 (38%), Gaps = 11/137 (8%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L A+    + I  T    A  G   N   +  ++  +G  V+D +VV + +        
Sbjct: 378 PLAAV---PVAIVGTFAAMAALGYSVNNLTLFGLVLAVGIVVDDAIVVVEAV---QHHIE 431

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVA 808
             +  R    K+++E  G  V        +V    V+   ++      FA+ +A   +++
Sbjct: 432 HGLEPRAATIKALDEVSGP-VIAVGLVLSAVFVPCVFITGIVGEFYRQFAVTIAVSTLLS 490

Query: 809 ASSSIFIAAPILLFIYD 825
           A +S+ ++  +   +  
Sbjct: 491 AFNSLTLSPALCALLLK 507


>gi|299769344|ref|YP_003731370.1| hypothetical protein AOLE_05500 [Acinetobacter sp. DR1]
 gi|298699432|gb|ADI89997.1| hypothetical protein AOLE_05500 [Acinetobacter sp. DR1]
          Length = 1059

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/523 (12%), Positives = 145/523 (27%), Gaps = 33/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        +  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----KLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVSAIREQNIQVAAGTIGASPTNSPVQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 +    +      
Sbjct: 236 NAQGRL---------------TTEQEFSDIILKTAPDGAVTRLGDVARVELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIEAGLSPRDATYRAMREVSGPIIAIALTLVAVFVPLAFMT 460

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G   + FA+T+ +S +IS F ++++  A+   +++    K
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALAAMLLKGHDAK 503



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 118/395 (29%), Gaps = 18/395 (4%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
            ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 652  AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 711

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   +  M           ++D++ +           +      + G      F+   
Sbjct: 712  AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 771

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +          L +         V  S+L ++                   
Sbjct: 772  RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 831

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 832  INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 890

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++     L  I  + + I   L    L G + N+     ++ L+G +  + ++
Sbjct: 891  FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTGGDNNIFTQIGLMVLVGLACKNAIL 950

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  R+   L     +      ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 951  IVEFARE---LEMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 1007

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I + FG++      +F+     + I    +K+ 
Sbjct: 1008 MGIAVFFGMIGVTLFGLFLTPAFYVLIRTLNSKHK 1042



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 363 WRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S RD   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 423 A---GLSPRDATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 480 ISAFNSLTLSPALAAMLLK 498


>gi|316933825|ref|YP_004108807.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Rhodopseudomonas palustris DX-1]
 gi|315601539|gb|ADU44074.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris DX-1]
          Length = 1046

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/661 (11%), Positives = 177/661 (26%), Gaps = 39/661 (5%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF-LQMYSDELRSFLKK-EGI 86
           +  + ++P  +P               + +            +   +  +   +   EG+
Sbjct: 30  RLPVSQYPDVVPPT-------------VSVSASYPGASARTVMDSVALPIEQQVNGVEGM 76

Query: 87  GVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
                    +    + ++F            V   +    ++L        L    +   
Sbjct: 77  IYMQSTSASDGSYNLVVTFDIGTDPNMAQVLVQNRVSLATAQLPASVSTQGLNVKKKSTS 136

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +              +  S        +++                  +    DP +L+
Sbjct: 137 ILQFVSLYSADGRYDNLFLSNYAKINIQNELARLPGVGDVSVLGSGSYAMRIWLDPDKLQ 196

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
               T + +       +N     + G          QY ++                 + 
Sbjct: 197 SYGLTPSDVVSAVQQQSNQVTAGLVGGPPAPSIVNFQYALDVVGR-----------FNEA 245

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              + +V  + D+ G +         +    +       L          S     +   
Sbjct: 246 TDFEKIVVKAIDQGGGKLVRIGDIGRVELGASSYGQTATLDGKPSAAIAISLLTGANALS 305

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
             +        +           V   +      S      T  I A LVL+V+ M +  
Sbjct: 306 VAQAVNAKMKEMAGAFPTGLDYKVSFDSTKFITASVDEVYETLIIAAVLVLLVILMFLQD 365

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  LV   ++ + +I   A +S +G T+   S+  +VL IG+ VD  I++ E +     
Sbjct: 366 WRAMLVPATTVPVTIIGAFAAMSAMGFTVNTTSLFALVLAIGIVVDDAIVIVEGVSRHIA 425

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
              S   +     S  +  I       +   +    +    G   + FA+ +  + LIS 
Sbjct: 426 GGMSSREAAVKAMSELFGPIIGITLVLMAVFLPAAAISGLTGKMYQQFALVIAATALISA 485

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
             A+++        +R              F  +       +       V  SI  +I  
Sbjct: 486 INAVTLKPTQCALWLRAPVPPEQRNVVYRIFNAVYARCETVYAALIRRLVAFSIPTTIVG 545

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
           + L+       G+ F G  ++        D      +L+               K   + 
Sbjct: 546 LALI-------GVAFYGLSRVPTAFLPSEDQGYFIVSLKLPDSASAGRSEAAVAKAVELV 598

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +    +SV     +  +    T                + +++L    I   + +A+A 
Sbjct: 599 RKTAGVESVIGVSGISPLDNNATMYNAGMLYVVLRDWDQRKTKDLSIDAIAARVRAALAT 658

Query: 681 L 681
           L
Sbjct: 659 L 659



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 98/267 (36%), Gaps = 7/267 (2%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             SI+    ++ ++         +      +     + V +  +            +   
Sbjct: 226 APSIVNFQYALDVVGRFNEATDFEKIVVKAIDQGGGKLVRIGDIGRVELGASSYGQTATL 285

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                  +        ++++  + +    K++    P            K     + +  
Sbjct: 286 DGKPSAAIAISLLTGANALSVAQAVNAKMKEMAGAFPTGLDYKVSFDSTKFITASVDEVY 345

Query: 671 VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +II+A+ +L+ I +    W   L   TT+ + I       +  G   N T++ A++  
Sbjct: 346 ETLIIAAVLVLLVILMFLQDWRAMLVPATTVPVTIIGAFAAMSAMGFTVNTTSLFALVLA 405

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM---AAFISVLPM 786
           IG  V+D +V+ + +    +     +S R+   K+++E  G  +  ++   A F+    +
Sbjct: 406 IGIVVDDAIVIVEGV---SRHIAGGMSSREAAVKAMSELFGPIIGITLVLMAVFLPAAAI 462

Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSI 813
           +   G +   FA+ +A   +++A +++
Sbjct: 463 SGLTGKMYQQFALVIAATALISAINAV 489



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/443 (10%), Positives = 125/443 (28%), Gaps = 32/443 (7%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
              ++  ++GI      A   N  +   +  +  + ++   S+D   +R  + +   +   
Sbjct: 604  VESVIGVSGISPLDNNATMYNAGMLYVVLRDWDQRKTKDLSIDAIAARVRAALATLDTAT 663

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
             +  +     G G       TM + +       +++  A            +I     + 
Sbjct: 664  ALVLMPPPIQGIGNTS--GFTMMVEMKNGSSDFLALQNAAQQLAANASTQSAITHAASTF 721

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               +     +                       L +  +N    F    Q+ V A+ P  
Sbjct: 722  NADVKQLRLVVDRMKAETLGVTVGQVFSAVESYLGSTYVNQFTKFNNVFQVYVQADAPFR 781

Query: 591  LSVVRSNLESLQIGDISFQNFDG-------------------EKNFLVRLQYQPGDSVAQ 631
            L         ++  +                               LV        S   
Sbjct: 782  LRPGDVLKLKVKGSNGQMVPVGAVAYLTDEVGPPLITLYNLYPAATLVGSPATGFSSGEA 841

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
              ++  V  K       +           +  ++         ++ + +   +  +++ W
Sbjct: 842  MSLMSEVAAKSLPSSMGTAWTGMSYQEQVVGNQI----YYVFAVALLLVYFVLAGQYESW 897

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + L +  T+      G+  +L     ++ LI  +  + +++ +  R+    
Sbjct: 898  LQPLAVILAVPLTLLGTVAALEWSGLPNDLYTQIGIVLLIALAAKNAILIVEYARE---K 954

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
                +   +   ++        + TS A    +LP+A+  G+  G   S  I +  G++ 
Sbjct: 955  CIEGMPIAEAAIEAARLRFRPILMTSFAFIFGMLPLALATGAGAGARVSLGIAVVAGMLA 1014

Query: 808  AASSSIFIAAPILLFIYDWRAKN 830
            +   ++         +     + 
Sbjct: 1015 STGLAVLFVPAFFAVLQRMGTRR 1037


>gi|264676484|ref|YP_003276390.1| hydrophobe/amphiphile efflux-2 transporter [Comamonas testosteroni
           CNB-2]
 gi|262206996|gb|ACY31094.1| hydrophobe/amphiphile efflux-2 transporter [Comamonas testosteroni
           CNB-2]
          Length = 1059

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/694 (9%), Positives = 187/694 (26%), Gaps = 53/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +   G++        +  + +FPS  P               + +    
Sbjct: 8   RPIFAWVIAIFVIIAGVISI-----TKLPVAQFPSVAPPT-------------INVTATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
               +  +       +   +   +G+           Q  +T++FA     +     V  
Sbjct: 50  PGATSQTMTDSVLQLIEREINGAQGLMYMEASAPAGGQGTLTVTFAPGTNPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V  +L    +   +         +++     +   +   + +  + R  + +I   
Sbjct: 110 RLSRVLPRLPQVVQALGVRVDKSMSNFLMILAFQAESGETSRDDIADYVNRNVVPEIQRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L+    + A ++      N    G   G        
Sbjct: 170 DGVGKAQLFASGR-AMRVWVDPAKLQGFGLSIASVNAAIAAQNQQISGGALGNLPSTPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    +++                +    +                 I   +   
Sbjct: 229 TTTATIVVPGQLT-------------TPEEFGEVVLRSNSDGSTVRLKDVARIELGIESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +   T +      A +                      
Sbjct: 276 AFESRLDGKPAVAMAVQLTSTANAMATAKLVKAKMAEMEPFLPAGVKWSSPYDTSKFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+ + +   ++ L+    + + ++ T A++ + G T+ + ++
Sbjct: 336 SIEKVVHTLLEAIVLVFIVMLIFLQNIRYTLIPTIVVPIALLGTFAVMLVAGLTINILAM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    +    +  +   + 
Sbjct: 396 FAMVLVIGIVVDDAIVVVENVERIMAEEGLPPKEATIKAMGQIQGAVVGITVILVTVFLP 455

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L  F    G   R F++ M +SI  S F A+++  A+   +++                 
Sbjct: 456 LAMFSGATGNIYRQFSLVMAISIFFSGFFALTLTPALCATMLKPIPKGHAHDKKTGLLGP 515

Query: 534 IPDCIAIQFM------------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +    +F               +       +   + +  +     L            
Sbjct: 516 FYNWFNRKFDAGTKRYSSALSGVVKRSAQAFIVYLLVIAGVVFMFMRLPTAFLPTEDQGY 575

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +   +    + +    +++   +    +     + +  L +          +     K 
Sbjct: 576 VISLTQLPPGASLERTSKTVAELEKFVLSQPEVDHIVSILGFSFMGQGQNVGLAFTTLKD 635

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            +E     +   +     K +   +R G +  ++
Sbjct: 636 WSERTAPGSDAKSFADRAKGAMSALRDGFIFTLV 669



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 96/264 (36%), Gaps = 11/264 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +  ++L V   +   + +          G +    ++G  +  +  Q +PG +    
Sbjct: 782  MQPEDVMRLTVPNAQGQLVELSTMVSAKWISGPMQLTRYNGYPSMSITGQAKPGFTSGDA 841

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
                    +              +   K         ++    S +A+ + +   ++ W 
Sbjct: 842  MKEMEKLAQELPDGFGYEWTGQSLDEKKAGS----SAMLLYAFSILAVFLCLAALYESWS 897

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  +  + L +   +    +  +  ++    A++T+IG S  + +++ +  +    L+
Sbjct: 898  IPLSVLLVVPLGVFGAVAGMLMRSMPNDIYFQVALITVIGLSAKNAILIVEFAKD---LH 954

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVA 808
                S  +   ++ +      + TS+A  + V+P+ +  G+           + +G+V+ 
Sbjct: 955  AEGKSALEAALEAGHLRFRPILMTSLAFILGVVPLYIASGASAASQKEIGTGVFWGMVIG 1014

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               S+F+     + +++   K ++
Sbjct: 1015 TPISVFLVPVFFVAVFNLFGKKSK 1038



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 93/235 (39%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V      ++      +        +        +++A  ++++    ++   +P 
Sbjct: 260 VRLKDVARIELGIESYAFESRLDGKPAVAMAVQLTSTANAMATAKLVKAKMAEMEPFLPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               ++     K  +  I K +  ++ + + + I + I  +   + L     + + +  T
Sbjct: 320 GVKWSSPYDTSKFVKISIEKVVHTLLEAIVLVFIVMLIFLQNIRYTLIPTIVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G+  N+ A+ A++ +IG  V+D +VV + +     +    +  ++   K++ +
Sbjct: 380 FAVMLVAGLTINILAMFAMVLVIGIVVDDAIVVVENV--ERIMAEEGLPPKEATIKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LP+A++ G+       F++ MA  I  +   ++ +   +
Sbjct: 438 IQGAVVGITVILVTVFLPLAMFSGATGNIYRQFSLVMAISIFFSGFFALTLTPAL 492


>gi|87308287|ref|ZP_01090428.1| Hydrophobe/amphiphile efflux-1 [Blastopirellula marina DSM 3645]
 gi|87288844|gb|EAQ80737.1| Hydrophobe/amphiphile efflux-1 [Blastopirellula marina DSM 3645]
          Length = 1139

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/546 (12%), Positives = 141/546 (25%), Gaps = 45/546 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G +           + ++P   P               + +    
Sbjct: 9   RPIFAWVISIVIILVGTICVW-----ILPIAQYPEIAPPT-------------VQVTCSY 50

Query: 63  DDFVNGFL-QMYSDELRSFL----KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   +        +   S       +T++FA     +     V  
Sbjct: 51  PGASAQVVADTVAAPIEQQVVGVEDAIYMSSQSASDGSYTLTVTFALGTDLDMAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRI 171
            +    + L    K   + T  +    ++      +            +  S     Q  
Sbjct: 111 RVSQAVALLPDVVKATGVTTKKKSPNILMAVTLVAEDNPESGKADYDQLFISNYATIQVR 170

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           DQ+   +         +    +    +P  L     T   +       N        G  
Sbjct: 171 DQLAGLDGVGDVAILGQQDYSMRIWLNPDALATRSMTAGDVINAVKEQNVQVAAGQIGQP 230

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
            +      Q  +     +                 +    +       +         + 
Sbjct: 231 PVPPGQELQLTMTTLGRL-------------QDPEQFADIVVKTGSDGQITRVRDVAKVE 277

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                +     L                +              L+    P     +    
Sbjct: 278 LGAKNLNTQSRLDGRASVSLGVFQLPGSNALNVGALVKTRMKELKESFPPGLTYEIAYDT 337

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      LV IV+ + +   K  ++    + ++++ T A+++++G T
Sbjct: 338 TPFIEESVEEVFKTLRDAIILVAIVVLLFLQDWKAVMLPMIDVAVSLVGTFAIMAMMGFT 397

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L   ++ G+VL IG+ VD  I+V E I     K   V  +           I    +   
Sbjct: 398 LNNLTLFGLVLAIGIVVDDAIVVLENIERWIAKGYKVRDATIHAMEEITGPIIAITLVLS 457

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
                  F G   G   R FA+T+  ++LIS   A+++  A    I R  K      +  
Sbjct: 458 SVFFPSAFLGGITGQFFRQFALTIAAAMLISALNAMTMTPARATSIFRDPKPGEEHTDHR 517

Query: 529 SRFFLI 534
                 
Sbjct: 518 EALPWW 523



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 74/187 (39%), Gaps = 9/187 (4%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           ++ +K+     +      +T     +   E+ +     +I+ AI +L+++     W   +
Sbjct: 318 MKELKESFPPGLTYEIAYDTTPFIEESVEEVFKTLRDAIILVAIVVLLFLQ---DWKAVM 374

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             +  + + +  T    A+ G   N   +  ++  IG  V+D +VV + +    +     
Sbjct: 375 LPMIDVAVSLVGTFAIMAMMGFTLNNLTLFGLVLAIGIVVDDAIVVLENI---ERWIAKG 431

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASS 811
              RD    ++ E  G  +  ++       P A  G   G     FA+ +A  ++++A +
Sbjct: 432 YKVRDATIHAMEEITGPIIAITLVLSSVFFPSAFLGGITGQFFRQFALTIAAAMLISALN 491

Query: 812 SIFIAAP 818
           ++ +   
Sbjct: 492 AMTMTPA 498



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/222 (8%), Positives = 71/222 (31%), Gaps = 12/222 (5%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                L  +              + +   +       +    +       +++++  I  +
Sbjct: 900  NGVNLPIISTGQVLETMNHLAKQELPTTMEAEWTEISFLQEQASQFTSFKDVLQNPISAL 959

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV-----AAVL 727
            + + + + + +  +++ W      I  + + +   L    +  +  +   +        +
Sbjct: 960  LGAVVLVYLILAAQYESWELPFTIILVVPMCVLAALAGLVISTMSGSPMDLNIFVQIGFV 1019

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G +  + ++V +  +   ++    +   +   ++    L   V TS A  + V P+ 
Sbjct: 1020 VLVGLACKNAILVVEFAKD--RMERDGLPLMEATVEACTTRLRPIVMTSFAFVLGVAPL- 1076

Query: 788  VWGGSVIGSFAIPMAFGIVVAASSSIF---IAAPILLFIYDW 826
            ++G          +   +        F   +  P+  ++  W
Sbjct: 1077 LFGHGAGAEMRYALGVAVFSGMLGVTFFGLVFTPVFYYVVMW 1118



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 58/542 (10%), Positives = 138/542 (25%), Gaps = 58/542 (10%)

Query: 4    NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            +   +   +++  +GL+        +  +   PS             +   +L+ +V   
Sbjct: 606  SLLRISAVALVVYVGLITLTGYGFTKIPVGFIPS-------------QDKGYLLFDVQLP 652

Query: 64   DFVN-GFLQMYSDELRSFL---KKEGIGVFSMRQI--QNKITLSFADS------------ 105
            D  +    +    E+   +   +  G  +    Q   QN I+ +FA              
Sbjct: 653  DAASLERTKAVVQEIEKIVLETEGVGHILAVSGQSFIQNAISSNFAGGFVVLKPFDERGT 712

Query: 106  --RFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
                  ++A ++      +            +          ++ ++  D  +     Q+
Sbjct: 713  EATGAIHVASELRKKFSQIQEARVSVFNAPAVDGLGNAGGFKLMVEDRGDNGLPVLQAQA 772

Query: 164  MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
              +    +D  GI  +      +           D  R++              L     
Sbjct: 773  DHLANTALDTPGIVMA-----FNSFRANTPQLYIDIDRVKCKTMGVELEQVFSALQGYMG 827

Query: 224  KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
              ++        +       E    ++   +             P+  I+  E       
Sbjct: 828  GVYVNDFNRFGRTWQVNVQAESSFRVNAESVRQLKVRGRNDQMVPIGTIATIEDS----- 882

Query: 284  EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343
                   G  L    +G                 Q+           L   + A    I 
Sbjct: 883  ------TGPVLINRYNGFPAAVINGVNLPIISTGQVLETMNHLAKQELPTTMEAEWTEIS 936

Query: 344  LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI---- 399
                +     +                 LV ++L       +        + + V+    
Sbjct: 937  FLQEQASQFTSFKDVLQNPISALLGAVVLVYLILAAQYESWELPFTIILVVPMCVLAALA 996

Query: 400  -LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFS 457
             L ++ +S     L +    G V+ +GLA  + ILV E  ++   R    +  +     +
Sbjct: 997  GLVISTMSGSPMDLNIFVQIGFVVLVGLACKNAILVVEFAKDRMERDGLPLMEATVEACT 1056

Query: 458  RAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                 I  ++   ++    L F    G        + +   +L   F  +         +
Sbjct: 1057 TRLRPIVMTSFAFVLGVAPLLFGHGAGAEMRYALGVAVFSGMLGVTFFGLVFTPVFYYVV 1116

Query: 515  IR 516
            + 
Sbjct: 1117 MW 1118


>gi|58582104|ref|YP_201120.1| preprotein translocase subunit SecF [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624006|ref|YP_451378.1| preprotein translocase subunit SecF [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|188576290|ref|YP_001913219.1| preprotein translocase subunit SecF [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58426698|gb|AAW75735.1| protein-export membrane protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84367946|dbj|BAE69104.1| protein-export membrane protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188520742|gb|ACD58687.1| protein-export membrane protein SecF [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 322

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/282 (30%), Positives = 152/282 (53%), Gaps = 5/282 (1%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    LIP+   I FMR R   + + ++ ++ S+ ++   G NY ++F GG  +    
Sbjct: 1   MKIFPLHLIPNDTKIDFMRWRKPVLILMLVLAVASVGIIVGKGFNYALEFTGGTLVQTSF 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR---VLEMVKKKI 642
            + VD+  VR  L      +   QN  G  + ++RLQ     +        V E V+K +
Sbjct: 61  QKTVDVDQVREKLSKAGFENAQVQNARGGNDVMIRLQPHGQSNNRDDAARTVAEEVRKAV 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
           T     +T+Q  E VGP++ ++L   G+   +   +  LIYI  RF+W FA+ A  T + 
Sbjct: 121 TSDENPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALF 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+ F +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   ++++
Sbjct: 181 DLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRAL--RVEPLEVLN 238

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           +SIN+TL R+V T++  F+S L + ++GG  +   A     G
Sbjct: 239 RSINQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIG 280


>gi|226228396|ref|YP_002762502.1| multidrug resistance protein [Gemmatimonas aurantiaca T-27]
 gi|226091587|dbj|BAH40032.1| multidrug resistance protein [Gemmatimonas aurantiaca T-27]
          Length = 1054

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/690 (12%), Positives = 186/690 (26%), Gaps = 47/690 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      ++  +I  +GL       +    + R+P   P               +     
Sbjct: 11  RRPVLAAVISMVITLLGLFA-----MQSLPVSRYPQITPPA-----------VQVTAFYP 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                 V   +    ++  S L         +       +++ F  SR ++  A  V   
Sbjct: 55  GASAADVATAVAAPIEQQLSSLNGLLYYKSSNTSDGTMSMSIYFDISRNQDLAAVDVQNA 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L    ++  +  T      + L     D     A   S        ++I    
Sbjct: 115 VGVATPQLPAAVRQTGVTITKANSDILALVAITSDDPRYDASYLSNYAKIYVENEIKRIP 174

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                     +   +    +P R+ QL  T   +       N +K G   G         
Sbjct: 175 GVGDSRVFGNLDFAMLISMNPERMAQLGITVEDVQQAVSAQNATKPGGRLGREPSPMGTQ 234

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V     ++             +  +    I                 +        
Sbjct: 235 LTIPVVTTGRLT-------------QPSEFGEIIVRARPDGSLVRVKDIAEVTMGSRGYD 281

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +        +  G+   +              L     P     +          S
Sbjct: 282 AKARVNGKPTANLLVFGRPGANNLEVKNAIVKRMQELAPTFPPGVRYEIPFDTTPFITES 341

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+F+ +   +  L+   ++ +++I T   L  LG T+   ++ 
Sbjct: 342 IKEVVKTLFEAMLLVTLVVFLFLKSWRATLIPVLAVPVSIIGTFLGLQALGFTINTLTLF 401

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +     ++  S   + +    +    +    +      + +
Sbjct: 402 GLVLAIGIVVDDAIVVIENVERIMEQDHVSPRVATNRAMKQVGGALVAIVLVLCAVFIPV 461

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-------KKMKSIDINP 527
            F GG      + FA T+ +S++IS   A+++  A+   ++R+       K  ++ D   
Sbjct: 462 AFVGGITGAMYKQFAATIVISVVISGLVALTLTPALCATLLRHKTYEEEGKFFQAFDRGF 521

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                           R R W  G +++  +  +      G     + KG   + +    
Sbjct: 522 ARLTRKYVSGATGVIDRPRTWVAGFAVILVLIGVLYKAVPGGFLPNEDKGYFAVSIQLPD 581

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L      +  +           G             +      +   +K        
Sbjct: 582 AASLQRTSDVVTEVNRIVRDDPMVRGTVALEGFALLTGSNLTNVATMFVTLKPWGERTGK 641

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             +++       K    L       V+   
Sbjct: 642 DESLEAVLARINKKLGGLKE----AVVFGF 667



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 77/203 (37%), Gaps = 8/203 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A  + ++ +       V      +T     +  +E+++     +++  + + +++   
Sbjct: 308 KNAIVKRMQELAPTFPPGVRYEIPFDTTPFITESIKEVVKTLFEAMLLVTLVVFLFL--- 364

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L  +  + + I  T       G   N   +  ++  IG  V+D +VV + +   
Sbjct: 365 KSWRATLIPVLAVPVSIIGTFLGLQALGFTINTLTLFGLVLAIGIVVDDAIVVIENV--E 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
             +    +S R   ++++ +  G  V   +      +P+A  G   G++   FA  +   
Sbjct: 423 RIMEQDHVSPRVATNRAMKQVGGALVAIVLVLCAVFIPVAFVGGITGAMYKQFAATIVIS 482

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
           +V++   ++ +   +   +   +
Sbjct: 483 VVISGLVALTLTPALCATLLRHK 505



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  +   I   L    L G   ++     + T++G +  + +++ +      
Sbjct: 896  SWSIPFAVLLGIPFGIVGALFGVWLRGSPSDVYLQVGLFTVVGLAAKNAILIVEFA---T 952

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
             L     S RD   ++  E     + TS A  + VLP+ + GG       S    +  G+
Sbjct: 953  SLRAQGYSIRDAAIEAARERFRPILMTSFAFILGVLPLVIAGGAGAGSRRSLGTGVFAGM 1012

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +VA    IF        I  +  +
Sbjct: 1013 LVATLVGIFFIPLFFALIRRFTER 1036


>gi|221632666|ref|YP_002521887.1| protein-export membrane protein SecF [Thermomicrobium roseum DSM
           5159]
 gi|221155382|gb|ACM04509.1| protein-export membrane protein SecF [Thermomicrobium roseum DSM
           5159]
          Length = 307

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/293 (27%), Positives = 142/293 (48%), Gaps = 15/293 (5%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R++   +S++  I  +  L  HGL   IDF GG    +  +RPV    VR  L    I
Sbjct: 6   GKRYYWFLLSLIVIIPGLVSLAVHGLRLSIDFTGGTLWEIQLSRPVQPGDVRQVLAQNGI 65

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            D   Q  D     +   + + G         E + + +       T    E VGP +  
Sbjct: 66  DDAIVQTADNNVVLIRMRELKEGSPE-----KEKLTQALRASFGDITELRLESVGPTLGT 120

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGFFALFGI-- 716
            +  + I  V ++ + +L+YI   F+     + + + AI  ++ D+   LG F++ G   
Sbjct: 121 AIRNRAITAVALTTVGILLYIAWAFRNTNNPFLYGIAAIIAMLHDVAVVLGVFSILGWLR 180

Query: 717 --EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             E +   V A+LT+IG+SV+D +VV+DR+R+N+     + +F  +++ S+ +TL RS+ 
Sbjct: 181 GVEVDALFVTALLTVIGFSVHDTIVVFDRIRENLAR-RAAPTFEQIVNYSLVQTLVRSIN 239

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TS+   +++L + + GG  I +F + +  GIV    SSIF A+ I++   +  
Sbjct: 240 TSLTVVLTLLALYLLGGETIRTFVLALLIGIVSGTYSSIFNASQIVVVWENRE 292


>gi|260550882|ref|ZP_05825088.1| multidrug ABC transporter [Acinetobacter sp. RUH2624]
 gi|260406009|gb|EEW99495.1| multidrug ABC transporter [Acinetobacter sp. RUH2624]
          Length = 1059

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/585 (11%), Positives = 155/585 (26%), Gaps = 35/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPSNSPLQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 +    +      
Sbjct: 236 NAQGRL---------------TTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIEAGLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMT 460

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +       F     
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALAAILLKGHDAKPDALTRIMNRVFGRFFA 520

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F RA                  +  +    G+       +
Sbjct: 521 LFNRVFSRASDRYSQGVSRVISHKASAMGVYAALLGLTVGISYIV 565



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 117/395 (29%), Gaps = 18/395 (4%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
            ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 652  AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 711

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   +  M           ++D++ +           +      + G      F+   
Sbjct: 712  AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 771

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +          L +         V  S+L ++                   
Sbjct: 772  RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 831

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 832  INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 890

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++     L  I  + + I   L    L   + N+     ++ L+G +  + ++
Sbjct: 891  FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTAGDNNIFTQIGLMVLVGLACKNAIL 950

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  R+   L     +      ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 951  IVEFARE---LEMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 1007

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              + + FG++      +F+     + I    +K+ 
Sbjct: 1008 MGVAVFFGMIGVTFFGLFLTPAFYVLIRTLNSKHK 1042



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 363 WRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                ++ R+   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 423 A---GLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 480 ISAFNSLTLSPALAAILLK 498


>gi|224582189|ref|YP_002635987.1| cation efflux system protein [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224466716|gb|ACN44546.1| putative cation efflux system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 1055

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRSSLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGAVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|66046098|ref|YP_235939.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae B728a]
 gi|63256805|gb|AAY37901.1| Hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 1048

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/519 (12%), Positives = 150/519 (28%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P   P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPDIAPPTVK---------ISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I+L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASISLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+R+ +     + +S      N        G     +      
Sbjct: 174 DVQTLGSG-YAMRIWLDPARMEKYSLMPSDISSALEAQNTEVSAGQLGALPAVEGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL--PIKLNIVEERNVGADLGSD 359
            L             +  +     E        L            ++          S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPAQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     +   S   +         S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMDEEHLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 498



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 303 GEAIKAKLKELEPFYPAQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 421 VMDEEHLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 481 LLSVLVAMTLTPAL 494



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 77/252 (30%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +        S   G    + ++G  +  V     PG S            K 
Sbjct: 789  VRNSNDEMVPFSSFASSSWSYGSPLLERYNGSSSLEVVGDPAPGVSSGTAMDAVEAIIKQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + V+   + +     +   W      +  + L
Sbjct: 849  LPEGIGYEWTGQSYQLRLSGSQAPMLYAISVLFVFLCLA---ALYESWSVPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    + G+  ++     +LT +G +  + +++ +  +    L     S  +   
Sbjct: 906  GVVGAVLATRISGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK---HLQEQGKSLHEATL 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPI 819
             +  + L   + TS+A    VLP+A+  G+           +  G+  A    IF+    
Sbjct: 963  LAARQRLRPILMTSLAFMFGVLPLALSSGAGSAGRNAIGTGVLGGMFSATVLGIFLVPLF 1022

Query: 820  LLFIYDWRAKNA 831
             + +    ++++
Sbjct: 1023 FVEVRRRFSRSS 1034


>gi|256424552|ref|YP_003125205.1| acriflavin resistance protein [Chitinophaga pinensis DSM 2588]
 gi|256039460|gb|ACU63004.1| acriflavin resistance protein [Chitinophaga pinensis DSM 2588]
          Length = 1037

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/639 (10%), Positives = 186/639 (29%), Gaps = 41/639 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++        +  +   P                    V     
Sbjct: 11  RPVLAAVMSVLILLLGIVGYFFLGTREYPVVDSPVVTITT--------------VYPGAS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +E  +            R+  + I++ F  +   E  A  V   +   
Sbjct: 57  ADVIASQVTKPLEEAIAEANGIRTIKSVSREQVSVISVEFNLNTDLEAAASDVRDKVSKS 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  D +  ++  +   E  + L   +         + +  +     +++        
Sbjct: 117 RMQLPTDIEPPVVEKSGPSEALVFLIVQSKT---KSLEDITDFVNTNIKERLQSIPGVRL 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++     T A +       N          +    S   +  
Sbjct: 174 VNVYVGRKRSMRLRMDPVKMSAYGLTPADIQQALQRENVELPSGRIEGQNAEVSLRTKGR 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  + + + + ++                +S                             
Sbjct: 234 LVTEEDFNNMIISQKNGAMIRFKDIGTAVMSSKNERTSMITFSG---------------- 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            TA        S +   +    ++        ++  +       + +        S    
Sbjct: 278 PTANFSVGTNVSPQRGANSLAIVDEFNKRFEEIKKTAPKDYEITLGKDFTEPVRNSLEEV 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +  +   LV +++F+ +   +  ++   +I +++I    ++ +   ++ + ++ G+VL
Sbjct: 338 EESLFLAFMLVSLIIFIFLRDWRSTIIPLVAIPVSIISAFFIMYVANYSINVLTLLGLVL 397

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E I  +     +   +   G    +  +  + IT     + + F G 
Sbjct: 398 AIGLVVDDAIVVLENIYSKVEAGMTPEEAAIKGSDEIFFAVISTTITLATVFLPILFLGG 457

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+ +  S+++S F A+++   M  ++      +  +          F    
Sbjct: 458 VTGQLFREFAVVVSGSVMVSAFVALTLSPMMSAYLLKAHTGHNWLYRKTEPYFIAFNNAY 517

Query: 536 DCIAIQFMRARFWGVG-ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
           +     F+R R+     ++  F +    L         ++ +  I + V+A        +
Sbjct: 518 ERSLNAFLRVRWVAFILLAASFGLTFCLLPKLPSELAPLEDRSSIGIAVIAPEGTSFESM 577

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            ++++ +            +           GD      
Sbjct: 578 EASMKEIGQYIKDSIPDHKDDITYAVTAGALGDLEQPVN 616



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 70/230 (30%), Gaps = 6/230 (2%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             N  I  K G  +         +S        +     +     G      R       
Sbjct: 240 FNNMIISQKNGAMIRFKDIGTAVMSSKNERTSMITFSGPTANFSVGTNVSPQRGANSLAI 299

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                +  E +KK   +   ++  ++          E+     +  ++ ++ + I++   
Sbjct: 300 VDEFNKRFEEIKKTAPKDYEITLGKDFTEPVRNSLEEVEESLFLAFMLVSLIIFIFL--- 356

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  +  + + I        +     N+  +  ++  IG  V+D +VV + +   
Sbjct: 357 RDWRSTIIPLVAIPVSIISAFFIMYVANYSINVLTLLGLVLAIGLVVDDAIVVLENI--- 413

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                  ++  +   K  +E     + T++      LP+   GG     F
Sbjct: 414 YSKVEAGMTPEEAAIKGSDEIFFAVISTTITLATVFLPILFLGGVTGQLF 463



 Score = 42.4 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 22/220 (10%), Positives = 74/220 (33%), Gaps = 8/220 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++ +   +   P   V+    ++ + +   +++P     +        +       +   
Sbjct: 808  DQAYSATISATPAPGVSLGEAIKEMDQITKKVLPKDFRTSLAGQSRDYAEG-SSSLMYAF 866

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + + + +  +F+        + T+ + +   L          N+ +   ++ LIG 
Sbjct: 867  LFAIVLIYLVLAAQFESLRDPFIILLTVPMALAGALMSLWFTAQTVNIFSQIGIIMLIGL 926

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ +             S  +    S        + T++A  +  LP+A+    
Sbjct: 927  ITKNGILIVEFAN---HTKQEGASPLEAARASAVSRFRPILMTTLAMILGTLPIALSLGA 983

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                  S  I +  G+V A   ++++   +  +    +  
Sbjct: 984  SSGSRKSLGIVVVGGLVFAGILTLYVIPAVYSYFSAHKKP 1023


>gi|168240156|ref|ZP_02665088.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194448317|ref|YP_002044380.1| hypothetical protein SeHA_C0444 [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194406621|gb|ACF66840.1| OqxB [Salmonella enterica subsp. enterica serovar Heidelberg str.
           SL476]
 gi|205340310|gb|EDZ27074.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
          Length = 1055

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGIVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQADNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|114761191|ref|ZP_01441106.1| hydrophobe/amphiphile efflux-1 family protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114545439|gb|EAU48441.1| hydrophobe/amphiphile efflux-1 family protein [Roseovarius sp.
           HTCC2601]
          Length = 1053

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/519 (14%), Positives = 154/519 (29%), Gaps = 29/519 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   GL+           +++FP   P   +++     G S   +E   
Sbjct: 9   RPKFALVISLVISLFGLIS-----YLTLPVEKFPDITPP-EVNVSTAFLGASATTVEESV 62

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    D          +   S       +T++FA     +     V   +   
Sbjct: 63  AAPLEEQINGVDD-------MMYMSSSSADSGLYTMTVTFAVGTDPDIATVNVQNRVSQA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NSKL  D  +N + T+      +++     +      +  S        D +       +
Sbjct: 116 NSKLPADVVRNGVSTSKSSSNMLLMVALYSEDGSYDELFLSNYANINLRDPLARVPGVGR 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +   +    DP RL  L  T +         N        G     D     Y 
Sbjct: 176 ADVLTDLKYAMRIWMDPERLAALGMTPSDFVAAIQDQNAIVPAGTVGGPPGGDDPQLTYT 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V  +  +                 +    +        +        +            
Sbjct: 236 VTAQGLLDA-------------PEEFEQIVLRTGRDGAQVTVGDVARVELGSQFYTYSGS 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                 +          +     E        L A         V   N      S    
Sbjct: 283 FNGVPSSVIGVYQAPGANAVAVSEGVISTIDRLAANLPEGMDYAVTYNNTDFIESSIDDV 342

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T  +   LVL V+++ +   +  L+   +I +++I   A++   G +L   S+  +VL
Sbjct: 343 IQTLLLALVLVLAVVYIFLGSWRATLIPAVAIPVSLIGAFAVMQAAGMSLNTISLFALVL 402

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG+ VD  I+V E       +  +   +         + +  + +  L   V + F   
Sbjct: 403 AIGIVVDDAIVVVENTERLIAEGLAPKEATRRAMREVTAPVIATTLVLLAVFVPVTFMPG 462

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
             G     FAIT+  ++LIS   A+++  A+   I++ +
Sbjct: 463 ITGRLYSEFAITISGAVLISSLNALTLSPALCSLILKPR 501



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 77/219 (35%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R      ++   T   E +               +        +E    GIV VI+ 
Sbjct: 815  NLYRSAALTANTSPGTSTGEAIALLEQVAAETLPPGYSFEWTGSALQEQESGGIVVVILG 874

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y+++      W   L  + T+ L +        + G + NL     ++ LIG  
Sbjct: 875  LAVIFAYLFLVAQYESWTMPLAILLTVPLALLGAYVAVLIAGRDVNLYTQIGMIMLIGLG 934

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ +     M L  +  S  D   ++        + T+++  + V+P+ +    G
Sbjct: 935  AKNAILIVE---YAMHLRASGRSIFDAGTEAARLRFRAVMMTALSFLLGVVPLVIASGAG 991

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                 +  I +  G+  A++  + +   + + +   R K
Sbjct: 992  AGSQQAIGIAVFGGMAFASTFGVILTPILYVALQSGREK 1030



 Score = 39.3 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 55/148 (37%), Gaps = 8/148 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   L     + + +          G+  N  ++ A++  IG  V         +
Sbjct: 359 IFLGSWRATLIPAVAIPVSLIGAFAVMQAAGMSLNTISLFALVLAIGIVV----DDAIVV 414

Query: 745 RKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIP 800
            +N  +L    ++ ++   +++ E     + T++   A    +       G +   FAI 
Sbjct: 415 VENTERLIAEGLAPKEATRRAMREVTAPVIATTLVLLAVFVPVTFMPGITGRLYSEFAIT 474

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++  +++++ +++ ++  +   I   R 
Sbjct: 475 ISGAVLISSLNALTLSPALCSLILKPRK 502


>gi|285018538|ref|YP_003376249.1| rnd superfamily protein [Xanthomonas albilineans GPE PC73]
 gi|283473756|emb|CBA16259.1| probable rnd superfamily protein [Xanthomonas albilineans]
          Length = 1057

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/626 (10%), Positives = 150/626 (23%), Gaps = 48/626 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +PS  P               + +     
Sbjct: 9   PVFAWVVAILISLSGVIAIL-----NLGVESYPSIAPP-------------QVTVSATYP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S       ITL+F      +    +V   
Sbjct: 51  GASASTTERSVTQVIEQQLTGIDHLLYFNSSSSSSGIATITLTFETGTNPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +     +V        + +     D         +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTAQGVVVAKANAGFLSVIALRSDNPSIDRDALNDIVGSRVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    + + +       N        G         
Sbjct: 171 GVGSTQQFGA-EYAMDIWLNPEKLQGYHMSASDVLNAIRAQNVQFAAGSIGSDPAPQGQS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   +                +    I   +             +        
Sbjct: 230 FTATVSAEGRFT-------------SPEEFENIILRADGNGTVVRLKDVARVAFGPTSFG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +              L+              +      S
Sbjct: 277 IDTQYNGKPTGAFGIQLLPGANALNVSAAVKAKMEELQPSFPQGVTWFTPYESTTFVKIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T A    LV +V+ + +   +  L+    I + ++ T   +  +G T+   ++ 
Sbjct: 337 IEEVVKTLAEAIVLVFLVMLVFLQNFRATLIPTLVIPVALLGTFLGMWAIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLAPKAATHKAMSQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S   A+S   A+                 ++ +   
Sbjct: 457 AMQPGAAGAIYKQFAVTIAMSMGFSALLALSFTPALCAAFLKPTHSDNPNWFYRTFNTYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +         W    ++L  +C        G     + +G     V    
Sbjct: 517 DKLSRRYVGAVGGSIRHTPRWMAVFALLVVLCGFLFTRMPGSFLPEEDQGFALAIVQLPP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDG 613
               +        ++      +  +G
Sbjct: 577 GATKARTNQVFAQMRGILQQQKAVEG 602



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 81/235 (34%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V           I  Q                 +++  +  ++   +++    P 
Sbjct: 260 VRLKDVARVAFGPTSFGIDTQYNGKPTGAFGIQLLPGANALNVSAAVKAKMEELQPSFPQ 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                T        +  I + +  +  + + + + + +  + +   L     + + +  T
Sbjct: 320 GVTWFTPYESTTFVKISIEEVVKTLAEAIVLVFLVMLVFLQNFRATLIPTLVIPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   + A++  IG  V+D +VV + +     +    ++ +    K++++
Sbjct: 380 FLGMWAIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERIMSEEHLAPKAATHKAMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +P A+     G++   FA+ +A  +  +A  ++     +
Sbjct: 438 ITGAVVAITVVLAAVFIPSAMQPGAAGAIYKQFAVTIAMSMGFSALLALSFTPAL 492



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 54/134 (40%), Gaps = 14/134 (10%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +  T+ F  L G+  ++     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVSVLLVVPIGVLGTVAFSLLRGLPNDIYFKIGLITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----------GGSV 793
             +   +     + R+   ++ +      + TS A  + VLP+A+            G  V
Sbjct: 949  VEQRAM---GKTLREAATEAAHLRFRPILMTSFAFILGVLPLAISSGAGANARHAIGTGV 1005

Query: 794  IGSFAIPMAFGIVV 807
            IG      A G++ 
Sbjct: 1006 IGGMLFATALGLLF 1019



 Score = 43.5 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 45/536 (8%), Positives = 136/536 (25%), Gaps = 52/536 (9%)

Query: 3    NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               W+ +   ++   G L        +      P              +G +  ++++  
Sbjct: 534  TPRWMAVFALLVVLCGFL------FTRMPGSFLPEED-----------QGFALAIVQL-P 575

Query: 63   DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT----------LSFADSRFKENIA 112
                         ++R  L+++      ++                 +       +   A
Sbjct: 576  PGATKARTNQVFAQMRGILQQQKAVEGMLQVAGFSFLGRGENVGMGFIRLKPWEERNITA 635

Query: 113  DKVTLFLQGVNSKLNVD----PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168
             ++   L G+   +            +    +     +  Q+         ++    ++ 
Sbjct: 636  TELIQQLNGMFYGIKDAQIFVVNLPTVQGLGQLGGFDMWLQDRSGAGQEALLQARNMLLG 695

Query: 169  QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
                +             +   +QL    D  + + +  +   +                
Sbjct: 696  MAAQRQDTLTGVRPNGLENAPQLQLK--VDRVQAQSMGLSINDIYQSIQ---LMLAPVYA 750

Query: 229  GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
               F         +  D    SG                     + D+ G R+   ++  
Sbjct: 751  NDFFYEGRIKRVNMQADAPFRSGPESLRNFYVP--------SSTATDDSGLRQMIPLSTV 802

Query: 289  NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 +               + + +     S    +     +        L +  + + 
Sbjct: 803  VKSDWVYGSPSLSRYNGYSAVEIVGNPAPGRSSGQAMSAMEDIVNNDLPKGLGLDWSGMS 862

Query: 349  ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
             + + A   +  +   +  +V   +  +           +     + + V+ T+A   L 
Sbjct: 863  YQEIIAGNTATLLLVLSIVVVFLCLAAL----YESWSIPVSVLLVVPIGVLGTVAFSLLR 918

Query: 409  GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            G    +    G++  IGLA  + IL+ E   E+    +++  +        +  I  ++ 
Sbjct: 919  GLPNDIYFKIGLITVIGLAAKNAILIVEFAVEQRAMGKTLREAATEAAHLRFRPILMTSF 978

Query: 469  TALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              ++  + L      G  A       +   +L +    +  +    + +      K
Sbjct: 979  AFILGVLPLAISSGAGANARHAIGTGVIGGMLFATALGLLFIPLFFVVVRHMLGDK 1034


>gi|197249206|ref|YP_002145329.1| OqxB [Salmonella enterica subsp. enterica serovar Agona str. SL483]
 gi|197212909|gb|ACH50306.1| OqxB [Salmonella enterica subsp. enterica serovar Agona str. SL483]
          Length = 1055

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGIVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|304386804|ref|ZP_07369069.1| RND superfamily drug:proton (H+) antiporter [Neisseria meningitidis
           ATCC 13091]
 gi|304339113|gb|EFM05202.1| RND superfamily drug:proton (H+) antiporter [Neisseria meningitidis
           ATCC 13091]
          Length = 1067

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 159/570 (27%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYLSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 101/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|121635351|ref|YP_975596.1| drug efflux protein [Neisseria meningitidis FAM18]
 gi|161870561|ref|YP_001599733.1| drug efflux protein [Neisseria meningitidis 053442]
 gi|120867057|emb|CAM10821.1| probable drug efflux protein [Neisseria meningitidis FAM18]
 gi|161596114|gb|ABX73774.1| drug efflux protein [Neisseria meningitidis 053442]
 gi|325132796|gb|EGC55476.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis M6190]
 gi|325145095|gb|EGC67378.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis M01-240013]
 gi|325205573|gb|ADZ01026.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis M04-240196]
          Length = 1067

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/574 (11%), Positives = 156/574 (27%), Gaps = 48/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS                  + L    
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-------------ITLRATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   +       ++L+F     +     +V  
Sbjct: 50  PGASAQVMEDSVLSVIERNMNGVEGLDYLSTSADSSGSGSVSLTFTPDTDENLAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   
Sbjct: 110 KLSEVLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q          +    DP +L+    + A +       N        G        
Sbjct: 168 EGVGQVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  + ++                 +    I          +      +G  +   
Sbjct: 227 TVTATVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +      A L                      
Sbjct: 274 SSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEI 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++
Sbjct: 334 SIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    +       +   V 
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVP 453

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L  F    G   + FA+TM  SI  S F A+++  A+         +K+I          
Sbjct: 454 LAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKG 508

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                  +F        G        +  ++  +
Sbjct: 509 FFGWFNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 101/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|284041417|ref|YP_003391347.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Spirosoma
           linguale DSM 74]
 gi|283820710|gb|ADB42548.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Spirosoma linguale DSM 74]
          Length = 1072

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/668 (10%), Positives = 178/668 (26%), Gaps = 51/668 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G+L      L    + +FP  +P               + +   
Sbjct: 7   KRPLLSTVISVLIVLLGVLA-----LTGLPVTQFPDIVPP-------------SVTVTTK 48

Query: 62  EDDFVNGF-LQMYSDELRSFLKKE-GIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                    ++  +  L   +     +   +     +    I + F      +  A  V 
Sbjct: 49  YTGASADVCVKAVATPLERAINGVPNMTYMTSISGNDGSTLIQVFFKVGTDPDLAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V  +L  +  K  +VT  E    ++      D                 + ++  
Sbjct: 109 NRVTTVMDELPEEVIKAGVVTEKEVNSMLLYLNIVSDDPKVDEKFIYNFADINVLAELKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P R+     +  ++       N        G    +  
Sbjct: 169 IDGVGFAAIMGSRDYSMRVWLKPDRMTAYDISADEVIAGIRKQNVEAAPGKAGESADQTP 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY++                    +  +    +                ++      
Sbjct: 229 QSLQYVL-------------RYTGKFFEPAQYENIVLRANADGSLLRLKDIADVEFGSLD 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG-SLPIKLNIVEERNVGAD 355
                          +   +   + +  I       A L+                    
Sbjct: 276 YGVLSKNDGRPSAAIMLKQRPGSNASDVIANVKARMAELKETSFPAGMTYNYAYDVSRFL 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV +++F+ +   +  L+   ++ + ++ T A +S +  ++ L 
Sbjct: 336 DASIHEVIRTLIEAFVLVFLIVFLFLQDWRSTLICALAVPVALVGTFAFMSAIDFSINLL 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC----SLDMGFSRAYSTIFDSNITAL 471
           ++  +VL IG+ VD+ I+V E +  +  +          +     + A   I        
Sbjct: 396 TLFALVLAIGIVVDNAIVVVEAVHAKMEEEHLTPRAATFAAMSDIAGAIVAITLVMSAVF 455

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMK 521
           +    +    G   R F++T+ ++I+IS   A+++  A+   ++R           +   
Sbjct: 456 VPVAFMSGPVGIFYRQFSLTLAIAIVISGVNALTLTPALCAILLRPMHGEKTGLLGRFFI 515

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +    S        +     R       + +             G     + +G + +
Sbjct: 516 KFNRGYESLASWYQGLLRRVVSRGIITWGLLLLFVLATWGISTVLPGGFIPTEDQGMLYV 575

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V       +S     L++++      ++ D             G   +    +  +K  
Sbjct: 576 NVTTPVGATVSRTEKVLDAIEAVASEQESVDNVSTLAGFSLLTDGAGASYGMAMINLKPW 635

Query: 642 ITEIVPLS 649
                 + 
Sbjct: 636 EERNESMQ 643



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 91/261 (34%), Gaps = 10/261 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      + + AN    L  ++   +              +      +  +       +
Sbjct: 242 FEPAQYENIVLRANADGSLLRLKDIADVEFGSLDYGVLSKNDGRPSAAIMLKQRPGSNAS 301

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRF 688
            V+  VK ++ E+   S                +   I      +I + + + + +++  
Sbjct: 302 DVIANVKARMAELKETSFPAGMTYNYAYDVSRFLDASIHEVIRTLIEAFVLVFLIVFLFL 361

Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +  T  F +      NL  + A++  IG  V++ +VV + +   
Sbjct: 362 QDWRSTLICALAVPVALVGTFAFMSAIDFSINLLTLFALVLAIGIVVDNAIVVVEAVH-- 419

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
            K+    ++ R     ++++  G  V  ++      +P+A   G V      F++ +A  
Sbjct: 420 AKMEEEHLTPRAATFAAMSDIAGAIVAITLVMSAVFVPVAFMSGPVGIFYRQFSLTLAIA 479

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           IV++  +++ +   +   +  
Sbjct: 480 IVISGVNALTLTPALCAILLR 500



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 69/222 (31%), Gaps = 10/222 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV- 673
              + +          A       V K I E+      +        +SRE +  G   + 
Sbjct: 815  TRYNMYTSAMINGDAAPGYSSGDVIKAIEEVAAKELPKGYAYEWSGMSREEVMSGDQAIY 874

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA---VLTLI 730
            I +   + +Y+ +  ++      +  L+   T   G FA   +      + A   ++ LI
Sbjct: 875  IFAICLVFVYLLLVAQYESLFLPLPVLLSLPTGVFGSFAFLQLAGLQNNIYAQVSLVMLI 934

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G    + +++ +      +     +   +   +     L   + TS A    ++P+    
Sbjct: 935  GLLGKNAILIVEFAN---QRQKEGLPIIEAALEGAVSRLRPILMTSFAFIAGLIPLCMAS 991

Query: 790  GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G   +   S     A G+       + I   + +       +
Sbjct: 992  GAGALGNRSIGTAAAGGMFTGTIFGLVIIPGLYVIFAKLAER 1033


>gi|168261233|ref|ZP_02683206.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|194446408|ref|YP_002039588.1| hypothetical protein SNSL254_A0390 [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194405071|gb|ACF65293.1| OqxB [Salmonella enterica subsp. enterica serovar Newport str.
           SL254]
 gi|205349760|gb|EDZ36391.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 1055

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDIARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|203288085|ref|YP_002223100.1| protein-export membrane protein [Borrelia recurrentis A1]
 gi|201085305|gb|ACH94879.1| protein-export membrane protein [Borrelia recurrentis A1]
          Length = 298

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/299 (23%), Positives = 137/299 (45%), Gaps = 7/299 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHG--LNYGIDFKGGIQLGVLANRPVDLSV 593
                 F++     +  S           F +    N+G+DF  G+ +  + ++      
Sbjct: 1   MQKVFNFLKYGNKAIIASFCMIFLGFIYTFMYHGGYNWGVDFSSGLNINFVIDKAGIKDS 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT----EIVPLS 649
               + SL              +          +    +   E+    +     E     
Sbjct: 61  DIKRVLSLFYKTFDVNEIIANDSKSHFDIIIKSEVTDYSLKKEIHSMLLDKLGIEFDANV 120

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I ++  +  + S  L  K ++ V ++   +L+Y+ +RF+  +A+ +I   + DI   + 
Sbjct: 121 EILDSYFIDSRFSSVLRTKSVLLVCLTFALILVYVTLRFRLSYAVSSIFATMHDILFVIA 180

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  LF IE N + + ++LT+IGYS+ND ++++DR+R+N +   T  SF ++++ SI++TL
Sbjct: 181 FLGLFRIEINSSIIVSILTIIGYSLNDTIIIFDRIRENSRNI-TDSSFLNILNISIHQTL 239

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS+  F++V  + ++    I  F++    G+VV   SS+FIA+PILL  Y    
Sbjct: 240 SRTILTSITTFVAVFSIYIFTEGAIKDFSLIFMVGVVVGTFSSVFIASPILLSCYKKIK 298


>gi|254720583|ref|ZP_05182394.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. 83/13]
 gi|265985621|ref|ZP_06098356.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. 83/13]
 gi|306838048|ref|ZP_07470905.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Brucella
           sp. NF 2653]
 gi|264664213|gb|EEZ34474.1| hydrophobe/amphiphile efflux-1 family protein [Brucella sp. 83/13]
 gi|306406785|gb|EFM63007.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Brucella
           sp. NF 2653]
          Length = 1050

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTAAY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLTLTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVVKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.3 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|254805464|ref|YP_003083685.1| putative efflux system transmembrane protein [Neisseria
           meningitidis alpha14]
 gi|254669006|emb|CBA07388.1| putative efflux system transmembrane protein [Neisseria
           meningitidis alpha14]
          Length = 1067

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 159/570 (27%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYLSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 101/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|85704670|ref|ZP_01035772.1| hypothetical protein ROS217_06309 [Roseovarius sp. 217]
 gi|85671078|gb|EAQ25937.1| hypothetical protein ROS217_06309 [Roseovarius sp. 217]
          Length = 1057

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 57/518 (11%), Positives = 136/518 (26%), Gaps = 26/518 (5%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87
           P   +  +P  +P + +                     +   +    +E  + ++     
Sbjct: 30  PNLPISEYPEVVPPSIV---------VRATYPGANPKVIAETVATPLEEQINGVEGMLYM 80

Query: 88  VFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                      +T++F      +     V   +     +L  + +   + T       ++
Sbjct: 81  SSQATSDGVLTLTVTFELGTDADQAQQLVQNRVSQAEPRLPAEVRSLGVSTVKSSPDLMM 140

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +                   +    D++   +   Q          +    DP +  Q  
Sbjct: 141 VVHLTSPNDRYDITYLRNYAVLNIKDRLARIDGVGQVQVFGSGDYSMRVWIDPQKAAQYD 200

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
              + ++      N      + G     D    Q  V  +  +                 
Sbjct: 201 LAASDITNAIREQNVQAAAGIIGASPNVDGVDLQLSVNAQGRL-------------QTPE 247

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                I       +         I    A      +L                +      
Sbjct: 248 DFGNIIVRTGETGQVTRLHDVARIELGAADYSLRSLLDGKAAVALPVFQSPGSNAIAISN 307

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L           +          S      T      LV+IV+ + +   + 
Sbjct: 308 EVLTTMEELEEAMPDDVEFEIVYDTTKFVRSSIEKVVHTLLEAVALVVIVVIVFLQTWRA 367

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            ++   ++ ++++ T  ++ + G ++   S+ G+VL IG+ VD  I+V E +        
Sbjct: 368 SIIPLIAVPVSIVGTFGVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIENGL 427

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTA 503
           +   +           I    +  +   V L F     G   R FA+T+ +S +IS   +
Sbjct: 428 NPRQATYKAMKEVSGPIIAIALVLVAVFVPLAFISGLSGQFFRQFALTIAISTVISAINS 487

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           +++  A+   +++        +             A  
Sbjct: 488 LTLSPALAALLLKDHHAPKDWLTKGMDRLFGWFFRAFN 525



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 +  I  + + +   L    L G + N+     ++ LIG SV + +++ +  R+  
Sbjct: 902  SMTLPIAIIMIVPMGVMAALTGIWLTGGDNNVFTQIGLVVLIGLSVKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + VLP+ +    G  +  +  + +  G+
Sbjct: 960  -LEIEGKTPVEAAIEASRLRLRPILMTSIAFILGVLPLVLSTGAGAEMRVAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      IF+     + +  
Sbjct: 1019 IGVTVFGIFMTPVFYVLLRK 1038



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 82/232 (35%), Gaps = 17/232 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L+      +      G     +  +        +  + + V+ +I 
Sbjct: 270 RIELGAADYSLRSLLDGKAAVALPVFQSPGSNAIAISNEVLTTMEELEEAMPDDVEFEIV 329

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   +    IV ++               W  ++  +  + + 
Sbjct: 330 YDTTKFVRSSIEKVVHTLLEAVALVVIVVIV-----------FLQTWRASIIPLIAVPVS 378

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T G   +FG   N  ++  ++  IG  V+D +VV + + +N+      ++ R    K
Sbjct: 379 IVGTFGVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI---ENGLNPRQATYK 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           ++ E  G  +  ++      +P+A      G     FA+ +A   V++A +S
Sbjct: 436 AMKEVSGPIIAIALVLVAVFVPLAFISGLSGQFFRQFALTIAISTVISAINS 487


>gi|213586868|ref|ZP_03368694.1| acriflavin resistance protein B [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 796

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/591 (10%), Positives = 153/591 (25%), Gaps = 29/591 (4%)

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +ITL+F      +    +V   LQ     L  + ++  +         +++         
Sbjct: 3   RITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGT 62

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
               + S  +     D I  +               +    +P+ L +   T   +    
Sbjct: 63  MTQEDISDYVAANMKDPISRTSGVGDVQLFGSQ-YAMRIWMNPTELTKYQLTPVDVINAI 121

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
              N        G             +  +  ++                +    +    
Sbjct: 122 KAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRLTSTD-------------EFGKILLKVN 168

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
               +        I                  +          +   T          + 
Sbjct: 169 QDGSQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKME 228

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
               P    +           S      T      LV +V+++ +   +  L+   ++ +
Sbjct: 229 PFFPPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPV 288

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMG 455
            ++ T A+L+  G ++   ++ G+VL IGL VD  I+V E +      +      +    
Sbjct: 289 VLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKS 348

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMI 512
             +    +    +      + + FFGG      R F+IT+  ++ +S+  A+ +  A+  
Sbjct: 349 MGQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCA 408

Query: 513 FI-----------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            +            +       +           D +         + +   I+    + 
Sbjct: 409 TMLKPVAKGDHGEGKKGFFGWFNRLFDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAY 468

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         + +G     V           +  L+ +    ++ +  + E  F V  
Sbjct: 469 LFVRLPSSFLPDEDQGVFLTMVQLPAGATQERTQKVLDEVTDYYLNKEKANVESVFAVNG 528

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
               G           +K         + ++           ++    +  
Sbjct: 529 FGFAGRGQNTGIAFVSLKDWADRPGEKNKVEAITQRATAAFSQIKDAMVFA 579



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 172 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 231

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 232 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 291

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 292 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 349

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 350 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 406


>gi|260777395|ref|ZP_05886289.1| protein-export membrane protein SecF [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260607061|gb|EEX33335.1| protein-export membrane protein SecF [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 300

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/284 (25%), Positives = 146/284 (51%), Gaps = 6/284 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              R R+    +S+   + S+      GLN G+DF GG+   V  ++ ++ + +   L+ 
Sbjct: 8   NIRRIRYITSFVSVALMVISLGAFAVKGLNMGLDFTGGMVTEVQVDKNLNNNDLLEVLQP 67

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 S  + D +  +++R      ++ A       +   ++ +     + +  +VG +
Sbjct: 68  SLGEFTSVTHSDQDGRWIIRYPIPEDEATAPD-----ITSVLSGVSHQVDVVSNSMVGSQ 122

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           + ++L+ +G + ++IS + +L Y+  RF+W  A G++  L+ D+   LGFFA   +EFNL
Sbjct: 123 VGQDLVDQGGLALLISMLCILGYLCFRFEWRLASGSLLALLHDVVLVLGFFAATQMEFNL 182

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T  AA+L ++GYS+ND +++ DR+R+ +     +    ++ D+++  T  R++ TS    
Sbjct: 183 TVFAAILAILGYSLNDSIIIADRIRELLVAKQKT-PTDEINDQAVIATFSRTMVTSGTTL 241

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           ++V  + + GG+ +  FAI M  GI+    SSI I   +  ++ 
Sbjct: 242 LTVSALWIMGGNALEGFAIAMFIGILSGTWSSISIGTVLPEWLK 285


>gi|19352356|ref|NP_598114.1| hypothetical protein pB4p17 [uncultured bacterium]
 gi|19070023|emb|CAD24339.1| mexD [uncultured bacterium]
          Length = 1047

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/692 (11%), Positives = 179/692 (25%), Gaps = 55/692 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL      +P   + ++PS  P               + +   
Sbjct: 7   RRPNFAWVVALFISMAGLLA-----MPFLPVAQYPSVAPP-------------QITISAT 48

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKEGIG---VFSMRQIQ-NKITLSFADSRFKENIADKVT 116
                   L       +   L           S       +IT++F      E    +V 
Sbjct: 49  YPGASAQVLTDSVTGVIEEELNGAKNLLYFESSSNANGIAEITVTFQPGTNPELAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI--SHAIEQSMEIIRQRIDQI 174
             L+   +++        + T       +++        +   +    +   +R    +I
Sbjct: 109 NRLKKAEARMPQAVLTQGIQTEQASAGFLLIYALRYKDGVNHENTTALADYAVRNINPEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    +P +L     +   ++      N       FG     
Sbjct: 169 RRLPGVGKLQFFDS-EAAMRVWINPQKLVGFGLSIDDVNNAIRGQNVQVPAGAFGSTPGT 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SEQELTATLAVKGTL-------------DTPEEFGRIVLRANQDGSSVLLGDVARLEVGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                           A        +   T E        L A         V       
Sbjct: 275 QSYNFSSRQDGKPAVAAAVQLSPGANAIRTAEAVKQRLDELSASLPDNVEVSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + S    T      LV +V+F+ +   ++ L+    + + +  TL  + LLG ++ +
Sbjct: 335 VDVAISKVITTLVEAMVLVFLVMFLFLQNVRYTLIPGIVVPVCLAGTLTFMYLLGFSVNM 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++ G+VL IG+ VD  I+V E +      +      +      +    I    +     
Sbjct: 395 MTMFGMVLAIGILVDDAIVVVENVERIMADEGLPPVEATIKAMGQVSGAIIGITLVLSAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMK 521
            + L F  G      + F++++ +SI+ S F A++   A+   +          +     
Sbjct: 455 FLPLAFMAGSVGVIYQQFSLSLAVSIMFSGFLALTFTPALCATLLKPIPQGHHEKRGFFG 514

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +              +    RA  +      +  +     L         + +G + +
Sbjct: 515 GFNRVFGRLTQRYTALNSKLVPRAGRFMFIYLAIVVVMGFFYLRLPESFVPAEDQGYMIV 574

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V                 L+   +S +         + L +          +   V K 
Sbjct: 575 DVQLPPGATRERTSETGAQLEEFLMSREAMGSS---FLVLGFSFSGMGENAALAFPVLKD 631

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +E     +++       +    L    I+ V
Sbjct: 632 WSERNSDQSVEAETAAVNEHFANLDDGTIMAV 663



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q  + S +                 +++     ++    +++  +P 
Sbjct: 262 VLLGDVARLEVGSQSYNFSSRQDGKPAVAAAVQLSPGANAIRTAEAVKQRLDELSASLPD 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +   +      +     I K I  ++ + + + + +++  +   + L     + + +  T
Sbjct: 322 NVEVSVPYDTSRFVDVAISKVITTLVEAMVLVFLVMFLFLQNVRYTLIPGIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L F  L G   N+  +  ++  IG  V+D +VV + +     +    +   +   K++ +
Sbjct: 382 LTFMYLLGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMADEGLPPVEATIKAMGQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      LP+A   GSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIIGITLVLSAVFLPLAFMAGSVGVIYQQFSLSLAVSIMFSGFLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 51.2 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 693  ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A+     LI+ I       A+   G+  ++     ++T+IG +  + +++ +  +     
Sbjct: 892  AIPLTVMLIVPIGALGSVLAVTSVGLSNDVYFKVGLITIIGLAAKNAILIVEFAKDLW-- 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S RD   ++        + TSMA  + V+P+ +    G +   +    +  G++ 
Sbjct: 950  -EQGYSLRDAAIEAARIRFRPIIMTSMAFILGVVPLVIASGAGAASQRAIGTGVIGGMLS 1008

Query: 808  AASSSIFIAAPILLFI 823
            A    + I  PI    
Sbjct: 1009 ATLLGV-IFVPIFFVW 1023


>gi|264677905|ref|YP_003277812.1| hydrophobe/amphiphile efflux-3 transporter [Comamonas testosteroni
           CNB-2]
 gi|262208418|gb|ACY32516.1| hydrophobe/amphiphile efflux-3 transporter [Comamonas testosteroni
           CNB-2]
          Length = 1048

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/690 (12%), Positives = 190/690 (27%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   GLL       P   + +FP+  P               + +    
Sbjct: 8   RPKLAWVVAIFILLAGLLAI-----PALPVAQFPNVAPP-------------QISISATY 49

Query: 63  DDFVNGF-LQMYSDELRSFLKK-EGIGVFSMRQIQ---NKITLSFADSRFKENIADKVTL 117
                   ++  +  +   L   +G+  F          +IT +FA          +V  
Sbjct: 50  PGASATTVMESVTSVIEEELNGTKGLLYFDSSSGATGLAEITATFAPGTDPALAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIG 175
            ++   ++L     +  L         +++       D    + +  S   +R   ++I 
Sbjct: 110 RIKKAEARLPASVMQMGLQVEQASANFLLIYSLTYKGDDSGKNEVRLSDYAVRNINNEIR 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 +        + +    DP +L     + A ++      N       FG +    
Sbjct: 170 RVPGVGKVQYFGA-DVAMRVWVDPQKLLGYGLSVADVNAAIAAQNAQVPAGSFGSQPGSS 228

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  +  K  +S                +    +                 +     
Sbjct: 229 EQELSATIAVKGTLS-------------SPEEFGQIVLQARADGSAVHLADVARLEVGQL 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                          A        +   T +      A L           V        
Sbjct: 276 DYSFASREDGHKGVAAAVQLAPGANAMQTAKAVKARLAELSQNFPDDIQYAVPYDTSRFV 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      T      LV +V+++ +   ++ L+    + + +  TLA++  LG ++ + 
Sbjct: 336 EVAIGKVIQTLVEAVVLVFLVMWLFLQNLRYTLIPTIVVPVCLAGTLAVMYALGFSVNMM 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   
Sbjct: 396 TMFGMVLAIGILVDDAIVVVENVERLMAEEGLSPLAATVRAMQQVSGAIVGITLVLVAVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           + L F  G      R F++++ +SIL S   A++   A+   +        +K+ K +  
Sbjct: 456 LPLAFMSGSVGVIYRQFSLSLAVSILFSGLLALTFTPALCATLLKPVAEDHHKEKKGLFG 515

Query: 526 NPLSRFFLIPDCIAIQFMR--ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                F  + +  ++   R   R     +     +  +   +T      + ++      V
Sbjct: 516 WFNRHFAKLTERFSLLNQRLVRRTGRYMLIYAAIVGGLGFAYTRMPESFVPYEDMGYYIV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               P   +  R+    L +           +   +      G           +K    
Sbjct: 576 SVQLPPGATEARTEAVVLDMEAYVQSRPATAQAEFLMGYSFSGMGQNAAMAFVTLKDWSL 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                ++    +    +    L     + V
Sbjct: 636 RGKGQASWDEVQAFNQRFGS-LSDGAAMAV 664



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V            + +    +            +++   + ++    ++++  P 
Sbjct: 262 VHLADVARLEVGQLDYSFASREDGHKGVAAAVQLAPGANAMQTAKAVKARLAELSQNFPD 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +     I K I  ++ + + + + +W+  +   + L     + + +  T
Sbjct: 322 DIQYAVPYDTSRFVEVAIGKVIQTLVEAVVLVFLVMWLFLQNLRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L      G   N+  +  ++  IG  V+D +VV + +     +    +S      +++ +
Sbjct: 382 LAVMYALGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERLMAEEGLSPLAATVRAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A   G   VI   F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIVGITLVLVAVFLPLAFMSGSVGVIYRQFSLSLAVSILFSGLLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 61/146 (41%), Gaps = 11/146 (7%)

Query: 693  ALGAITTLILDITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            ++ A   LI+ I         +  G+  ++     ++T+IG +  + +++ +  +    L
Sbjct: 893  SIPAAVMLIVPIGALGSVLATSALGLSNDVYFKVGLITIIGLAAKNAILIVEFAKD---L 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
            +    S  +   ++        V TS+A  + V+P+A+  G+   S A  +  G++    
Sbjct: 950  HERGHSLAEAALQAARLRFRPIVMTSLAFILGVVPLALATGAGASSQA-AIGVGVIGGML 1008

Query: 811  SS-----IFIAAPILLFIYDWRAKNA 831
            S+     +F+    +  +   R + A
Sbjct: 1009 SATLLGVLFVPIFFVFVLSLRRKRPA 1034


>gi|328954014|ref|YP_004371348.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454338|gb|AEB10167.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 1046

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/585 (10%), Positives = 162/585 (27%), Gaps = 31/585 (5%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +  + ++P  +P              +        + +   + +  ++  + ++      
Sbjct: 30  RLPVAQYPEIVPPVVQ---------VNTRYPGASAEVIANTVGIPIEQAVNGVENALYYT 80

Query: 89  FSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
            +     +  + ++FA           V   +     +L    +   L         +++
Sbjct: 81  STSGSDGSYTLNVTFAVGTDLNTSMSLVQNMVNKAMPELPGPVQSQGLTVKKVSTNILLV 140

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
                          S   +      +G  +              +    DP++L+    
Sbjct: 141 VSLYSQDERFDPAYLSNYGMINLQYPLGRLDGVGNVQVFGAGQYSMRVWLDPNKLQTFEL 200

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           TT  +       N        G   + +S   Q+ V     ++           +    +
Sbjct: 201 TTLDVVDAIQRQNIEVVAGQMGGPPVPESQVFQFTVNALGRLT-----------EVSQFE 249

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
            ++  S      +         +     + ++   L+     Q +       +     E 
Sbjct: 250 DIIVKSIRGEAPQVVRVRDIARVELSQQLFINFGGLSGKKSAQILIYPLPGANSLAVAEE 309

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
                A +          ++E         +      T      LVL+V+ + +   +  
Sbjct: 310 VRQAVAEMSKNFPEGLTYVIEHDTTKFIQQAIHAVYETLFEAGILVLVVIMVFLQNWRAT 369

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           LV   ++ + +I   A ++LLG T+ L ++  ++L IG+ VD  I++ E       +  S
Sbjct: 370 LVPATTVPVTIIGAFAAMALLGFTVNLMTLFALILAIGIVVDDAIVIVENASYYLEQGLS 429

Query: 448 VFCSLDMGFSRAYST---IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
              +              I     +  +    L    G   R FA+ +  + +IS   A+
Sbjct: 430 PKDAAIKTMEEMTGPVIGITLVLTSVFLPAAFLPGINGQLFRQFALVIASTAVISALNAL 489

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFL-------IPDCIAIQFMRARFWGVGISILFS 557
           ++        ++ +  K +         L           +       +   +    L +
Sbjct: 490 TLKPVQCAQYLKPRGEKKVGWFYCHFNQLYAKVEAAYMAIVTRMVHHPKVMLIIFFSLIT 549

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           +     +         + +G   + V          V +    + 
Sbjct: 550 VTGFFFVQHPTGFLPDEDQGYAIVTVRLPEGAAQPRVEAVSRKVN 594



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/189 (19%), Positives = 74/189 (39%), Gaps = 11/189 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + +  + K   E +      +T     +    +        I+  + +++++    
Sbjct: 308 EEVRQAVAEMSKNFPEGLTYVIEHDTTKFIQQAIHAVYETLFEAGILVLVVIMVFLQ--- 364

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       AL G   NL  + A++  IG  V+D +V+     +N 
Sbjct: 365 NWRATLVPATTVPVTIIGAFAAMALLGFTVNLMTLFALILAIGIVVDDAIVIV----ENA 420

Query: 749 KLY-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
             Y    +S +D   K++ E  G  +  ++      LP A      G +   FA+ +A  
Sbjct: 421 SYYLEQGLSPKDAAIKTMEEMTGPVIGITLVLTSVFLPAAFLPGINGQLFRQFALVIAST 480

Query: 805 IVVAASSSI 813
            V++A +++
Sbjct: 481 AVISALNAL 489



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 63/162 (38%), Gaps = 7/162 (4%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITK-TLGFFALFGIEFNLTAVAAVLTLIGY 732
             +S I + + +  +++ +F   A+  ++       L    + G + +L     ++ +I  
Sbjct: 876  ALSIILVFLVLSAQYESWFHPAAVILVVPTALVGVLIGLNVRGYDNDLYTQVGLVLMIAL 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            +  + ++V +  R+   L    +S  +   ++    L   + TS A  + V P+ + GG+
Sbjct: 936  ASKNAILVVEFARE---LKEKGLSTVEAAIEATRRRLRPIIMTSFAFILGVAPLLLAGGA 992

Query: 793  VI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  +    +  G++ +   +I       + +     +  
Sbjct: 993  GAASQRAIGTVVFGGMISSTLVAIPFVPVFYVVMEGLSERLK 1034


>gi|85858610|ref|YP_460812.1| acriflavin resistance plasma membrane protein [Syntrophus
           aciditrophicus SB]
 gi|85721701|gb|ABC76644.1| acriflavin resistance plasma membrane protein [Syntrophus
           aciditrophicus SB]
          Length = 1054

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/623 (11%), Positives = 160/623 (25%), Gaps = 31/623 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++  +GL+      +      +FP+ +P      G         +    +
Sbjct: 8   RPIVAMVIAILMVIVGLVA-----MSGLPTAQFPNIVPPEMKVTG---------MYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVF-SMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  S +         +    +  +T++F              +    
Sbjct: 54  AQTIEQSVATPIEQQMSGVDNMNYMYSLNSNDGKMSLTVNFDIKTDPSTDQILAQMRTNQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            NS+L  D     +         +++      +     +  +        DQ+       
Sbjct: 114 ANSQLPSDVISQGVTVQKSMSAPLIVFALFSPKGTYDNVFLANYCYININDQMTRVPGIA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L +L  T  ++       N        G   +       Y
Sbjct: 174 SVTVFGAGQYAMRLWVRPDQLAKLGITIPEIVNAVQQQNTVNPAGQVGGEPVPPGQEFTY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I           
Sbjct: 234 AVRSQGRLQNE-------------GEFGNIVIRANRDGSLVHVKDVGRIELGAQSYNLIG 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     + A  L   L+         +V      A       
Sbjct: 281 RLNGRPAAIIALYQLPGTNAIEAADGAKKLMTQLKERFPADLDYVVALDTTLAVTEGIKE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +  L+   ++ ++++ T     L G ++   S+ G+V
Sbjct: 341 IVHTLFEALALVIVVVFIFLQGWRATLIPLLAVPVSLVGTFMFFPLFGFSINTLSLFGLV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     +      +           +    +      V   F  
Sbjct: 401 LAIGLVVDDAIVVVEAVEHHIEQGMPPREATLKAMEEVSGPVIAIAVILAAVFVPTAFVP 460

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G   R +        +  + +A + +           + K      L +F    D     
Sbjct: 461 GITGRLYQQFAVTIAVSVIISAFNALTLSPALAALLLRPKKKSRGALQKF---FDGFNRI 517

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
           F R+    V     F   S   L        +    G  L        D   V + L+  
Sbjct: 518 FGRSTDGYVSWCDHFIRKSRMSLLFLFGTVILAAFFGKHLPTSFLPDEDQGYVYAGLQLP 577

Query: 602 QIGDISFQNFDGEKNFLVRLQYQ 624
               +   +   +K   + L+  
Sbjct: 578 DAASLQRTDAATKKAEEIILKTP 600



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 75/185 (40%), Gaps = 9/185 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               +++  +K++    +      +T +   +  +E++      + +  + + I++    
Sbjct: 305 DGAKKLMTQLKERFPADLDYVVALDTTLAVTEGIKEIVHTLFEALALVIVVVFIFLQ--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T  FF LFG   N  ++  ++  IG  V+D +VV + +    
Sbjct: 362 GWRATLIPLLAVPVSLVGTFMFFPLFGFSINTLSLFGLVLAIGLVVDDAIVVVEAV---E 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                 +  R+   K++ E  G  +  ++      +P A   G        FA+ +A  +
Sbjct: 419 HHIEQGMPPREATLKAMEEVSGPVIAIAVILAAVFVPTAFVPGITGRLYQQFAVTIAVSV 478

Query: 806 VVAAS 810
           +++A 
Sbjct: 479 IISAF 483



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 60/167 (35%), Gaps = 10/167 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              S + + + +  +++ W      +    + +    G   +   E N+ A   ++ LIG 
Sbjct: 878  GFSLLCVFLILAAQYESWSLPFSVLLGTPIAVMGAFGALWVLRFENNVYAQIGLVMLIGL 937

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
            +  + +++ +  +     Y       +         L   + TS A  +  +P+    G 
Sbjct: 938  AAKNAILIVEFAK---MEYEKGKPVVEAALTGARLRLRPILMTSFAFILGCVPLAMASGA 994

Query: 792  SVI--GSFAIPMAFGIVVAASSSIFIAA---PILLFIYDWRAKNARI 833
              +        +  G++ A+  +IF+      ++  +     + A+I
Sbjct: 995  GALSRRVMGWAVIGGMLAASFIAIFLIPVTFTVVEKLSHREERGAQI 1041


>gi|261399981|ref|ZP_05986106.1| multiple transferable resistance system protein MtrD [Neisseria
           lactamica ATCC 23970]
 gi|269210444|gb|EEZ76899.1| multiple transferable resistance system protein MtrD [Neisseria
           lactamica ATCC 23970]
          Length = 1067

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/614 (11%), Positives = 170/614 (27%), Gaps = 45/614 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A+L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMAVLGKYFPQGMGWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAAEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
               G   + FA+TM  SI  S F A+++  A+   +           +       +   
Sbjct: 458 SGATGNIYKQFALTMAASIAFSAFLALTLTPALCATMLKAIPKGHHEEKKGFFGWFNKKF 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +A    +     V    L  +     +         + +G + + V    
Sbjct: 518 DNWTHGYEGRVAKVLRKTVRMMVVYIGLAVVGVFLFMRLPTSFLPTEDQGFVMVSVQLPA 577

Query: 588 PVDLSVVRSNLESL 601
                   + LE +
Sbjct: 578 GATKERTDATLEQV 591



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 102/291 (35%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADGDARMQPADILNLTVPNKSGIAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               + L   P   V+  + +E V+K + E+    +++       +   +   + ++   +
Sbjct: 819  YPSMELSASPATGVSTGQAMEAVQKMVDELGGGYSLE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 92/237 (38%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMAVLGKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMGWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAAEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMAASIAFSAFLALTLTPAL 490


>gi|254526809|ref|ZP_05138861.1| protein-export membrane protein SecF [Prochlorococcus marinus str.
           MIT 9202]
 gi|221538233|gb|EEE40686.1| protein-export membrane protein SecF [Prochlorococcus marinus str.
           MIT 9202]
          Length = 304

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 118/244 (48%), Gaps = 6/244 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
               +     SV+    E+ +  +         +N    +  +      +     +    
Sbjct: 61  EEECSNFSPDSVIEKLRETSKNKNFLNNIKLQFQNNNKLISIRTPYLSIEESNNLINNLD 120

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                     +++ ++GPK+ + L+   +  +++S  A+ +YI IRF   +AL A+  L 
Sbjct: 121 NIVGPLNYESKDSRLIGPKLGKRLLINCVTSLLVSLFAISLYITIRFDKKYALFALLALF 180

Query: 702 LDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            D+    G F+  GI    E N     ++LT+ GYSVND VV++DR+R+N+K  +    +
Sbjct: 181 HDLVIVFGIFSWLGIILSVEVNSLFAVSLLTIAGYSVNDTVVIFDRIRENLK--SKKGGY 238

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            + I+ S+NE+  R+ +TS+     +L + ++G   +  F++ ++ GI+V + SSI +A 
Sbjct: 239 NETIELSVNESFRRTTFTSITTLFPLLSIVLFGSYSLFWFSLALSLGIIVGSYSSILLAP 298

Query: 818 PILL 821
            +LL
Sbjct: 299 SLLL 302


>gi|330820840|ref|YP_004349702.1| RND family hydrophobe/amphiphile efflux pump [Burkholderia gladioli
           BSR3]
 gi|327372835|gb|AEA64190.1| RND family hydrophobe/amphiphile efflux pump [Burkholderia gladioli
           BSR3]
          Length = 1088

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/685 (12%), Positives = 169/685 (24%), Gaps = 45/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +IC IG +  L     +  +D +P   P               + +    
Sbjct: 8   RPVFAWVIPILICLIGTISLL-----KMGIDSYPDIAPP-------------QVTVTATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   L            S    Q  ITLSFA     +    +V  
Sbjct: 50  PGANAATLESTVTQVIEQQLTGIDNLLYFSSASNGNGQATITLSFATGTNADIAEVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  L         ++            A   S  I  Q    I   
Sbjct: 110 KVALAEPLLPTEVTQQGLQVAKASPDILMFLSLQSSNPDIDAARLSDVIASQIQPVIARI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L+    +T ++       N        G        
Sbjct: 170 NGVGNTFMLGA-EYAMRIWLDPDKLQAYGLSTTQVQNAVSAQNAQFATGSVGADPAVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V      S                +    I   +             I       
Sbjct: 229 TFTATVSGDTLFS-------------SLQQFRDIILLSKNDGTVVRLGDVARITFGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +     +      A+L           V          
Sbjct: 276 GTSAIYQGKPAGGLGIYLLPGANALAVAKAVKAEMAVLAKDLPNGVTWDVPYDTTPFITA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+ + +   +  L+    I + ++ T   LS L  ++   ++
Sbjct: 336 SILDVVKTLVEAIVLVFFVMLIFLQNIRATLIPTLVIPVALLGTFIGLSALHFSINQLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +    I    +      V 
Sbjct: 396 FGMVLAIGIVVDDAIVVIENVERIMREEGLDPRAATRKAMGQITGAIIAITVVLAAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLS 529
                   G     FA+T+ +S+  S F A+S   ++   I+++ +              
Sbjct: 456 SALQPGATGIIYAQFALTIAVSMAFSAFLAMSFTPSLCATILKHDRHGEPNLVFRRFESG 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L    I       R     +    ++C +       L             +      
Sbjct: 516 FNRLSETYIGQVARAVRHVPRWMMAFVTVCVLAGFLYTRLPTSFVPDEDQGFVLALVNLP 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S ++S    ++      ++    K+       +    V  +  + M   K+T+    S
Sbjct: 576 PGSTLQSTDRVMKEVRERLKHSAIGKDIDDVFGIEGFSFVGSSENVGMAFIKLTDWSQRS 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
                 I         I    + V+
Sbjct: 636 DTAMQLIPKANGILHGINDAQIFVV 660



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 76/217 (35%), Gaps = 8/217 (3%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
              +   G   +L+        + A    + ++ K +   V      +T         ++
Sbjct: 281 YQGKPAGGLGIYLLPGANALAVAKAVKAEMAVLAKDLPNGVTWDVPYDTTPFITASILDV 340

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           ++  +  +++    MLI++         L     + + +  T    +      N   +  
Sbjct: 341 VKTLVEAIVLVFFVMLIFLQ---NIRATLIPTLVIPVALLGTFIGLSALHFSINQLTLFG 397

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  IG  V+D +VV + +     +    +  R    K++ +  G  +  ++      +P
Sbjct: 398 MVLAIGIVVDDAIVVIENV--ERIMREEGLDPRAATRKAMGQITGAIIAITVVLAAVFVP 455

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            A+  G+       FA+ +A  +  +A  ++     +
Sbjct: 456 SALQPGATGIIYAQFALTIAVSMAFSAFLAMSFTPSL 492



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/323 (11%), Positives = 102/323 (31%), Gaps = 10/323 (3%)

Query: 506  IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
            +    +       ++K + +   + F +  D +   +          S   +  S     
Sbjct: 747  LAPFYVNQFTYAGRVKRVYLEADAPFRMSLDALGHFYTPTNASASTTSGGTASASASSSG 806

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
            T   +            +     V LS V  +  S+    +   N       +       
Sbjct: 807  TVSTSTAPVDPSSSNASISPYNMVPLSSVIHSGWSVGPQALPRYNGYSAVEIVGNAAPGY 866

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                A   + ++V K +  +   +                 +  ++ V++  + +     
Sbjct: 867  STGQAMQALQQIVDKSLP-LGFAADWTGQSYQEIIAGDSATQLMLLSVVVVFLCLA---A 922

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +   W   +  +  + L +   L F  L     ++     ++T+IG +  + +++ +   
Sbjct: 923  LYESWSVPVSVLLVVPLGLLGMLSFCLLTNTPNDIYFKIGMVTVIGLAAKNAILIVEFAI 982

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            +        ++  D + ++    L   + TSMA  + VLP+ +    G +      I + 
Sbjct: 983  EGQAE---GLTLYDAVLRAAKLRLRPILMTSMAFILGVLPLVLSSGAGSTSRHEIGIGVI 1039

Query: 803  FGIVVAASSSIFIAAPILLFIYD 825
             G++ A +  + +     + +  
Sbjct: 1040 GGMLFATALGVLLIPVFYVAVRR 1062


>gi|270158447|ref|ZP_06187104.1| acriflavine resistance protein B [Legionella longbeachae D-4968]
 gi|289166715|ref|YP_003456853.1| multidrug efflux pump [Legionella longbeachae NSW150]
 gi|269990472|gb|EEZ96726.1| acriflavine resistance protein B [Legionella longbeachae D-4968]
 gi|288859888|emb|CBJ13874.1| putative multidrug efflux pump [Legionella longbeachae NSW150]
          Length = 1057

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/662 (9%), Positives = 173/662 (26%), Gaps = 23/662 (3%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD-ELRSFLKK-EGIG 87
             + ++P+ +P               + +           L       +   +   E + 
Sbjct: 31  LPVSQYPAIVPPT-------------IQVTTTYPGADAETLIKTVALPIEQQVNGVENML 77

Query: 88  VFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   N    + ++FA           V   +Q   ++L    +K  ++   +    
Sbjct: 78  YMQSTSTNNGTYTLIVTFAIGTDLNFAQVLVQNRVQSAMAQLPQSVQKQGVLVQQKSTNI 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +              +           D++         +        +    DP ++  
Sbjct: 138 LQFITLTSKNNEYDGLFLDNYAAINMQDELSRLPGVGNVIIFGTGTYAMRVWLDPQKMLA 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG-IHLNGATANFDP 263
                + +       N        G      +   Q+ V    +++     +        
Sbjct: 198 YSLNPSDVLEAITHQNQEISSGQIGAPPSAGTPAYQFTVNVPGQLADVEQFSNIIVKTIA 257

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
           +      + +     A+         +            L                +   
Sbjct: 258 QKPNQSANSNRINNSAQIVRIRDVGRVELGSNSYNQLAKLNNKPAAAIGIFQLPGANALE 317

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
                      +     P     V          S      T      LVLIV+ + +  
Sbjct: 318 VATEVRKAVEKMSKKFPPGMQYSVPFDTTIFVKASIDEVYKTLFEAGILVLIVILVFLQN 377

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  LV   ++ + +I     +  L  ++ L ++  +VL IG+ VD  I++ E + +   
Sbjct: 378 ARATLVPTTTVPVTIIGAFFAMLALSYSINLLTLFALVLAIGIVVDDAIVIVEGVTQHIE 437

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
           +      S     +     +    +  +   V   F     G     FA+ +  +  IS 
Sbjct: 438 RGTPPKESAIHAMAELMGPVIGITLVLMAVFVPAGFMPGLTGAMYAQFALVIAATAFISA 497

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
             A+++        ++    +         F  +   I   +++     V  +    +  
Sbjct: 498 INAMTLKPTQCALWLKPIDPQKKKNAAFRFFDRVYLPIENTYIKFIDKLVHKNKTVCLIG 557

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR-SNLESLQIGDISFQNFDGEKNFLV 619
           + L+    L       G I +       +++ +   S+LE  +           + + + 
Sbjct: 558 LSLVVIAILGLSRIPTGFIPIEDQGYAMLNVQLPDGSSLERTEALMHDLSEQISKIDGVE 617

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +    G S+            +  +    +++  +    ++ + L       +    + 
Sbjct: 618 NVISIDGISLLDNSASLPNGGALYVMFKDWSVRGKKEDLLEMYKRLNEVAQKNLGAKILV 677

Query: 680 ML 681
           M+
Sbjct: 678 MI 679



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 74/215 (34%), Gaps = 10/215 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +  Q   S     VLE V  ++          +T                   ++S I +
Sbjct: 842  MAAQGYSSGQAMEVLEKVAHQVLPAGISFEWTSTAYQEKIAGNL----SYYIFMLSLILV 897

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++ W      + ++ L +  T+   +  GI  N+     VL LI  +  + ++
Sbjct: 898  YLILAGQYENWVAPAAILLSVPLALIGTVLALSALGIANNMYTQIGVLLLIALAAKNAIL 957

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + +  R+  + +    S  +             + TS A  + V+P+      G +   S
Sbjct: 958  IVEVAREQHEYHNK--SIMEAAVLGAKTRFRPILMTSFAFILGVMPLVFATGAGANARKS 1015

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +  G++ +   ++       + +  W  +  
Sbjct: 1016 IGIAVCSGMLASTCLAVVFVPAFYVMLQSWHERRK 1050



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 73/203 (35%), Gaps = 9/203 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           + +E + KK    +  S   +T I       E+ +      I+  I +L+++        
Sbjct: 324 KAVEKMSKKFPPGMQYSVPFDTTIFVKASIDEVYKTLFEAGILVLIVILVFLQ---NARA 380

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L   TT+ + I              NL  + A++  IG  V+D +V+ + +    +   
Sbjct: 381 TLVPTTTVPVTIIGAFFAMLALSYSINLLTLFALVLAIGIVVDDAIVIVEGV---TQHIE 437

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                ++    ++ E +G  +  ++      +P        G++   FA+ +A    ++A
Sbjct: 438 RGTPPKESAIHAMAELMGPVIGITLVLMAVFVPAGFMPGLTGAMYAQFALVIAATAFISA 497

Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832
            +++ +                +
Sbjct: 498 INAMTLKPTQCALWLKPIDPQKK 520


>gi|255038386|ref|YP_003089007.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
 gi|254951142|gb|ACT95842.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
          Length = 1052

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/609 (13%), Positives = 183/609 (30%), Gaps = 42/609 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I  +G+L  L     +  + +FP  +P               +V+    
Sbjct: 8   RPVLSLVISIFITLLGVLAVL-----ELPVSQFPDIVPP-------------SVVVTATY 49

Query: 63  DDFVNGF-LQMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                   +   +  L   +    G+   +     +    I +SF      +  A  V  
Sbjct: 50  TGANAEVCVDAVAVPLEKAINGVPGMTYMTSVSGNDGVTTINISFNVGVDPDLAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q V  +L  +  K  + T  E    ++                        + ++   
Sbjct: 110 RVQTVIDELPEEVIKAGVTTEKEVNSMLMYLDIMSSDTTVGEDFVYNFADINILKELKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    +P R+     +  ++       N        GV   R+ +
Sbjct: 170 DGVGRAQIMGSKDYSMRVWLEPDRMNSYNVSADEVIQAIRDQNVVAAPGKTGVSSGREKN 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY+++   ++              +  +    +                 I       
Sbjct: 230 VLQYVLKYTGKL-------------FEPAQYENIVLRSNPDGSILKLKDVAKIEFGTLEY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADL 356
                         +   +   +    I+      A L+ A   P     V         
Sbjct: 277 DMASKSNGRPSASIMIKQRPGSNAQEVIQNIKDKVAELKGATFPPGMDYFVSYDVSRFLD 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++++++ +   +  L+   ++ + ++ T A + L G ++ L +
Sbjct: 337 ASIHEVIRTLIEAFILVILIVYLFLQDFRSTLIPALAVPVALVGTFAFMQLFGFSINLLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD+ I+V E +  +  +   + + +           I    +      V
Sbjct: 397 LFALVLAIGIVVDNAIVVVEAVHAKMAEKHLNAYEATIESMKEMSGAIIAITLVMSAVFV 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP-LSRF 531
            + F  G      R F+IT+ +SI+IS   A+++  A+   +++    + +  NP    F
Sbjct: 457 PVAFMSGPVGIFYRQFSITLAISIVISGINALTLTPALCALMLKNTHGQPVKNNPLTRFF 516

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                         R     I     I    L+      +GI+           ++ V  
Sbjct: 517 NGFNKGYNGVQSGYRKLLTAIVGRRMITIGLLIGFCVATFGINTILPSGFIPTEDQGVIN 576

Query: 592 SVVRSNLES 600
             V + + +
Sbjct: 577 VNVTTPVGA 585



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 90/261 (34%), Gaps = 10/261 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      + + +N    +  ++   +                     +  +        
Sbjct: 242 FEPAQYENIVLRSNPDGSILKLKDVAKIEFGTLEYDMASKSNGRPSASIMIKQRPGSNAQ 301

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-----ISAIAMLIYIWIR 687
            V++ +K K+ E+   +     +          +   I  VI        + +LI     
Sbjct: 302 EVIQNIKDKVAELKGATFPPGMDYFVSYDVSRFLDASIHEVIRTLIEAFILVILIVYLFL 361

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +   L     + + +  T  F  LFG   NL  + A++  IG  V++ +VV + +   
Sbjct: 362 QDFRSTLIPALAVPVALVGTFAFMQLFGFSINLLTLFALVLAIGIVVDNAIVVVEAVH-- 419

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
            K+    ++  +   +S+ E  G  +  ++      +P+A   G V      F+I +A  
Sbjct: 420 AKMAEKHLNAYEATIESMKEMSGAIIAITLVMSAVFVPVAFMSGPVGIFYRQFSITLAIS 479

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           IV++  +++ +   +   +  
Sbjct: 480 IVISGINALTLTPALCALMLK 500



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 74/224 (33%), Gaps = 10/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV- 673
              + +          A         K +  +   S  +        ++RE I  G   V 
Sbjct: 817  TRYNMYTSAMINGDAAPGFSSGDAIKAVERVAATSLPKGYTYDWSGMTREEILSGNQAVF 876

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I +   + +Y+ +      +   L  I +L   +        L G+E N+ A  +++ LI
Sbjct: 877  IFAICLIFVYLLLAAQYESFLLPLPVILSLPTGVFGAFLALKLMGLENNIYAQVSLVMLI 936

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G    + +++ +     +       +  + + +   E L   + TS A    ++P+    
Sbjct: 937  GLLGKNAILIVE---YAIIRQKEGRTVIEAVLEGATERLRPILMTSFAFVAGLIPLVMAS 993

Query: 790  GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G   I   S     A G+++     + I   + +       +  
Sbjct: 994  GAGAIGNRSIGAAAAGGMLIGTIFGVIIIPGLYVVFAGMAREKK 1037


>gi|70730605|ref|YP_260346.1| multidrug efflux RND transporter MexF [Pseudomonas fluorescens
           Pf-5]
 gi|68344904|gb|AAY92510.1| multidrug efflux RND transporter MexF [Pseudomonas fluorescens
           Pf-5]
          Length = 1059

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 73/583 (12%), Positives = 159/583 (27%), Gaps = 34/583 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVAAPLEQAITGVENMLYMSSQSTADGKITLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYALLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G      +   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVTAIREQNRQVAAGALGAPPAPTATSFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    +      
Sbjct: 236 SVNTQGRLVTEE-------------EFENIIIRSGEDGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIEISNEVRAKMAELKQSFPQGMDFSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+V
Sbjct: 343 VVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIGLGLNPVEATKRAMREVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         + +    L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKEHHAPKDRFSKILDKLLGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                 F RA    VG        S   LF +     + + G 
Sbjct: 523 KPFNRFFDRASHGYVGTVRRVIRGSGIALFLYAGLMVLTWFGF 565



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/236 (9%), Positives = 70/236 (29%), Gaps = 9/236 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      D            +         S      +E + K+               
Sbjct: 814  KVSDTAGPDRVMHYNGFVTAEINGAAAPGYSSGQAEAAIEKLLKEELPNGMTYEWTELTY 873

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                     +    V  +   +A L+       W   L  I  + + +   +    + G 
Sbjct: 874  QQILAGNTAL---FVFPLCVLLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVIVSGG 930

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + N+     ++ L+G +  + +++ +  +         +     + ++    L   + TS
Sbjct: 931  DNNIFTQIGLIVLVGLACKNAILIVEFAKD---KQEEGLDPLAAVLEACRLRLRPILMTS 987

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             A  + V+P+ +    G  +  +  + +  G++      + +     + I ++  +
Sbjct: 988  FAFIMGVVPLVISSGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNYVER 1043



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 88/236 (37%), Gaps = 17/236 (7%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L +     I      G     +  + +   +  +    + +   I     +    
Sbjct: 279 ALRSLLNNQPAVAIPIFQRPGSNAIEISNEVRAKMAELKQSFPQGMDFSIVYDPTIFVRG 338

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E V   +   LI   +V ++               W  ++  +  + + +  T     
Sbjct: 339 SIEAVVHTLFEALILVVLVVIL-----------FLQTWRASIIPLVAVPVSLIGTFAVMH 387

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG   N  ++  ++  IG  V+D +VV + + +N+ L    ++  +   +++ E  G  
Sbjct: 388 LFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIGL---GLNPVEATKRAMREVTGPI 444

Query: 773 VYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + T++      +    + G  G     FA+ +A   V++A +S+ ++  +   +  
Sbjct: 445 IATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK 500


>gi|330897352|gb|EGH28771.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 934

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 66/519 (12%), Positives = 151/519 (29%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTV---------KISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I+L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASISLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+++ +     + +S      N        G     +      
Sbjct: 174 DVQTLGSG-YAMRIWLDPAKMEKYSLMPSDISSALEAQNTEVSAGQLGALPAVEGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL--PIKLNIVEERNVGADLGSD 359
            L             +  +     E        L            ++          S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPAQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     +   S   +         S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMGEEHLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 498



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 303 GEAIKAKLKELEPFYPAQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 421 VMGEEHLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 481 LLSVLVAMTLTPAL 494


>gi|222824046|ref|YP_002575620.1| protein-export membrane protein SecF [Campylobacter lari RM2100]
 gi|222539268|gb|ACM64369.1| protein-export membrane protein SecF [Campylobacter lari RM2100]
          Length = 323

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 100/294 (34%), Positives = 163/294 (55%), Gaps = 3/294 (1%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                      FM+ RF  + +S +    SI +LFT GLN+GIDF GG  + +   +   
Sbjct: 1   MQFFSQKHVYDFMKMRFAAISLSFILFFGSIFILFTKGLNFGIDFTGGTLVQLQYEQKAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +R  L   +    +     G  N ++       D  +    + +    + +      
Sbjct: 61  LAEIRKALAINENLKGASVTEFGSANEVIIRFSGSSD--SLGSDIGVSIANLLQSTGKFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++  ++VGPK+  EL  KG++ V IS IA+LIY+ +RF+W FA+ +I   I DI  TLG 
Sbjct: 119 VRRVDVVGPKVGDELRNKGLMAVGISLIAILIYLAVRFEWRFAMASIVCEIHDIVITLGA 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            ALF I+ NL  +AAVLT++GYS+ND ++++DR+R+ +K  + +     +I++S++ TL 
Sbjct: 179 IALFEIDVNLDILAAVLTVLGYSLNDTIIIFDRIREGVKT-SKNSKLDLIINESVSATLS 237

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           R+  T+    ISV+ +  +GGS+I  FA+ M  GIV   +SSIF+A+P LL+  
Sbjct: 238 RTTLTTGLTLISVVVLYFFGGSMIEGFALTMIVGIVAGTASSIFVASPALLWFK 291


>gi|88859694|ref|ZP_01134334.1| preprotein translocase subunit SecD [Pseudoalteromonas tunicata D2]
 gi|88818711|gb|EAR28526.1| preprotein translocase subunit SecD [Pseudoalteromonas tunicata D2]
          Length = 621

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 156/514 (30%), Positives = 261/514 (50%), Gaps = 34/514 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
            + Q+   ++  A+    I LGLDL GG   VLEVD    +   LQ    + +S L+ E 
Sbjct: 126 IVSQATSPKWLQALGLAPIKLGLDLNGGVLFVLEVDTTQALREQLQSVEQQAKSVLRSEK 185

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL---VTTTEKE 142
           I           +TL+  D+   E              + L    K          TE+ 
Sbjct: 186 IRG---------VTLTIDDATPAEGKVMLGFNAQPTELNTLISQLKHTFTGLSTKQTEQS 236

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           +++  + + I       + Q++  +R RI ++GI+E+  QR GS++I ++LPG QDP+  
Sbjct: 237 VTLFFTPDAIQTFHQQVMLQAISTLRGRISELGITEAVTQRQGSNKIRVELPGVQDPTAA 296

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           ++++G TA + FH +           G +     DG+   +  KV +SG ++ GA ++ D
Sbjct: 297 KRIIGATASLDFHALQE--------IGGKRFTMEDGSSISLNPKVILSGQYIKGAQSSRD 348

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQ 310
                  V +  D  G +   E ++ NIG P+A V       A                 
Sbjct: 349 EMGKPA-VQLQLDAQGGKLMAEFSKHNIGNPMATVFSEYFKDANGNSVKKSKVINVATIN 407

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
           +    +  I+   + + A  LA +LRAGSL   + IV ++ +G  LG  +I  G  A+  
Sbjct: 408 SALGARFSITNMQSPQAAQELALLLRAGSLITPVTIVHQQTIGPSLGKANIENGFAALAL 467

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVD 429
           G+ +   FM + Y + G+VA+  + LN+I  + L+SLL  A LTLP IAG+VL IG+AVD
Sbjct: 468 GIAITFAFMALWYRRLGMVANTVLLLNLICLIGLMSLLPGAVLTLPGIAGLVLTIGMAVD 527

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +N+++ ERI+EE    +S   +L+ G+++A+ +I D+NIT L+  V+L+  G G ++GFA
Sbjct: 528 TNVIIFERIKEERALGRSPMMALEAGYNKAFHSIVDANITTLLTAVILYSIGYGPIKGFA 587

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           +T+GL IL SMFT + + +A+   + R ++ ++I
Sbjct: 588 LTLGLGILTSMFTGVFVAKALSYLVYRPRQSRTI 621



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 100/285 (35%), Gaps = 5/285 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
           +     S    +    +        G       +  +        S    +     +   
Sbjct: 339 YIKGAQSSRDEMGKPAVQLQLDAQGGKLMAEFSKHNIGNPMATVFSEYFKDANGNSVKKS 398

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              N     + L            Q      +  +   ++   TI + + +GP + +  I
Sbjct: 399 KVINVATINSALGARFSITNMQSPQAAQELALLLRAGSLITPVTIVHQQTIGPSLGKANI 458

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAA 725
             G   + +       ++ + ++    + A T L+L++   +G  +L  G    L  +A 
Sbjct: 459 ENGFAALALGIAITFAFMALWYR-RLGMVANTVLLLNLICLIGLMSLLPGAVLTLPGIAG 517

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  IG +V+  V++++R+++   L     S    ++   N+     V  ++   ++ + 
Sbjct: 518 LVLTIGMAVDTNVIIFERIKEERAL---GRSPMMALEAGYNKAFHSIVDANITTLLTAVI 574

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +   G   I  FA+ +  GI+ +  + +F+A  +   +Y  R   
Sbjct: 575 LYSIGYGPIKGFALTLGLGILTSMFTGVFVAKALSYLVYRPRQSR 619


>gi|323700496|ref|ZP_08112408.1| acriflavin resistance protein [Desulfovibrio sp. ND132]
 gi|323460428|gb|EGB16293.1| acriflavin resistance protein [Desulfovibrio desulfuricans ND132]
          Length = 1033

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/612 (11%), Positives = 167/612 (27%), Gaps = 46/612 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ + I   G++  L   +       FP+                    L   
Sbjct: 9   RRPVMTTLVMTAILVFGVMAYLRLPVSDLPSVDFPTIE--------------VSASLSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +               +ITL F   R  ++ A  V   +  
Sbjct: 55  NPETMASSVATPLEKQFSTIAGLDSMTSISSLGSTRITLQFTLERNIDDAALDVQSAITT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D              S +L   ++        + +         +I +     
Sbjct: 115 ALRRLPDDMTSTPSFRKVNPADSPILY-LSLSSPTMRLSDVNEYAENFMAQRISMVNGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  +  P RL  +     +++      N +                +  
Sbjct: 174 QVQVYGSQKYAVRIQLSPERLSAMELGVDEVAEAVRKGNVNLPVGTVAGPVREYIVRSSG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +    +                ++   +       
Sbjct: 234 KL--------------------MNAEDYKPLVVAWRKGAPVRLSDVADVFDSVEQTRRRN 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++    L    ++         V      +   S   
Sbjct: 274 WYNGQPGMVLAIQRQPGTNTVEVVKAVRALLPSFQSQLPAAINLNVLYDRSESIKESIGD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +  GLV++V+F+ +      ++   ++ ++VI T +++ L G +L   S+  + 
Sbjct: 334 VQFTLLLTVGLVILVIFLFLRRLSATIIPSLALPMSVIGTFSVMYLYGFSLNNISLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E I       +S   ++  G      TI    I+     + + F G
Sbjct: 394 LSVGFVVDDAIVMLENIVRHGEMGKSTLEAVMDGSKEIAFTIVSMTISLAAVFLPVLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLSR 530
              G     FA+T+  SILIS   ++++   +   I           K     +      
Sbjct: 454 GIVGRLFHEFAVTICASILISGLVSLTLTPMLCSLIIKPHNGETHHGKLFNLFERGFEGL 513

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  +       R   +   ++  +  +            +  G + +   A + V 
Sbjct: 514 RRFYARTLDWTLRHHRLTMLASILVLILTVVLFRAIPKGFLPTEDAGRLMVSTEAEQGVA 573

Query: 591 LSVVRSNLESLQ 602
             +++   + L 
Sbjct: 574 FDIMKERQQQLM 585



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 71/204 (34%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           V  ++    +++     +         I   +       ++   +
Sbjct: 285 IQRQPGTNTVEVVKAVRALLPSFQSQLPAAINLNVLYDRSESIKESIGDVQFTLLLTVGL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +L+      +    +     L + +  T     L+G   N  ++ A+   +G+ V+D +
Sbjct: 345 VILVIFLFLRRLSATIIPSLALPMSVIGTFSVMYLYGFSLNNISLMALTLSVGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +   ++      S  + +     E     V  +++     LP+   GG V     
Sbjct: 405 VMLENI---VRHGEMGKSTLEAVMDGSKEIAFTIVSMTISLAAVFLPVLFMGGIVGRLFH 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ +   I+++   S+ +   +
Sbjct: 462 EFAVTICASILISGLVSLTLTPML 485



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 87/244 (35%), Gaps = 11/244 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L    +G          +     + +      +    ++ V K   E+VP S   + +
Sbjct: 784  ETLAKWGLGVGPLSVNHSGQLPSATISFNLPPGESLGSAVDAVSKLAAEVVPASVSTSFQ 843

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                     +     + V++    ++IY+ +      +   L  ++ L       L    
Sbjct: 844  GEAQAFQDSMRG---LWVLLVMAILVIYMVLGVLYESFVHPLTILSGLPSAGVGALLTLM 900

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            +FG + N+     ++ LIG    + +++ D   +  + +       + I +         
Sbjct: 901  VFGQDLNIYGFVGIIMLIGIVKKNAIMMIDFAVEAQRGHGHGA--AEAIREGALIRFRPI 958

Query: 773  VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + T+MAA +  LP+A+    G        + +  G++V+   +++      +++   + +
Sbjct: 959  MMTTMAALMGTLPIALGLGAGAEARRPLGLAVVGGLLVSQLLTLYFTPVYYMYLDAAQQR 1018

Query: 830  NARI 833
              R+
Sbjct: 1019 LNRL 1022


>gi|299530225|ref|ZP_07043651.1| hydrophobe/amphiphile efflux-3 transporter [Comamonas testosteroni
           S44]
 gi|298721882|gb|EFI62813.1| hydrophobe/amphiphile efflux-3 transporter [Comamonas testosteroni
           S44]
          Length = 1048

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/690 (11%), Positives = 189/690 (27%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   GLL       P   + +FP+  P               + +    
Sbjct: 8   RPKLAWVVAIFILLAGLLAI-----PALPVAQFPNVAPP-------------QISISATY 49

Query: 63  DDFVNGF-LQMYSDELRSFLKK-EGIGVFSMRQIQ---NKITLSFADSRFKENIADKVTL 117
                   ++  +  +   L   +G+  F          +IT +FA          +V  
Sbjct: 50  PGASATTVMESVTSVIEEELNGTKGLLYFDSSSGATGLAEITATFAPGTDPALAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIG 175
            ++   ++L     +  L         +++       D    + +  S   +R   ++I 
Sbjct: 110 RIKKAEARLPASVMQMGLQVEQASANFLLIYSLTYKGDDSGKNEVRLSDYAVRNINNEIR 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 +        + +    DP +L     + A ++      N       FG +    
Sbjct: 170 RVPGVGKVQYFGA-DVAMRVWVDPQKLLGYGLSVADVNAAIAAQNAQVPAGSFGSQPGSS 228

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  +  K  +S                +    +                 +     
Sbjct: 229 EQELSATIAVKGTLS-------------SPEEFGQIVLQARADGSAVHLADVARLEVGQL 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                          A        +   T +      A L           V        
Sbjct: 276 DYSFASREDGHKGVAAAVQLAPGANAMQTAKAVKARLAELSQNFPDDIQYAVPYDTSRFV 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      T      LV +V+++ +   ++ L+    + + +  TLA++  LG ++ + 
Sbjct: 336 EVAIGKVIQTLVEAVVLVFLVMWLFLQNLRYTLIPTIVVPVCLAGTLAVMYALGFSVNMM 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   
Sbjct: 396 TMFGMVLAIGILVDDAIVVVENVERLMAEEGLSPLAATVKAMQQVSGAIVGITLVLVAVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           + L F  G      R F++++ +SIL S   A++   A+   +        +K+ K +  
Sbjct: 456 LPLAFMSGSVGVIYRQFSLSLAVSILFSGLLALTFTPALCATLLKPVAEDHHKEKKGLFG 515

Query: 526 NPLSRFFLIPDCIAIQFMR--ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                F  + +  ++   R   R     +     +  +   +T      + ++      V
Sbjct: 516 WFNRHFAKLTERFSLLNQRLVRRTGRYMLIYAAIVGGLGFAYTRMPESFVPYEDMGYYIV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               P   +  R+      +           +   +      G           +K    
Sbjct: 576 SVQLPPGATEARTEAVVRDMEAYVQSRPATAQAEFLMGYSFSGMGQNAAMAFVTLKDWSL 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                ++    +    +    L     + V
Sbjct: 636 RGKGQASWDEVQAFNQRFG-RLSDGAAMAV 664



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V            + +    +            +++   + ++    ++++  P 
Sbjct: 262 VHLADVARLEVGQLDYSFASREDGHKGVAAAVQLAPGANAMQTAKAVKARLAELSQNFPD 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +     I K I  ++ + + + + +W+  +   + L     + + +  T
Sbjct: 322 DIQYAVPYDTSRFVEVAIGKVIQTLVEAVVLVFLVMWLFLQNLRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L      G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LAVMYALGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERLMAEEGLSPLAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A   G   VI   F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIVGITLVLVAVFLPLAFMSGSVGVIYRQFSLSLAVSILFSGLLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 61/146 (41%), Gaps = 11/146 (7%)

Query: 693  ALGAITTLILDITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            ++ A   LI+ I         +  G+  ++     ++T+IG +  + +++ +  +    L
Sbjct: 893  SIPAAVMLIVPIGALGSVLATSALGLSNDVYFKVGLITIIGLAAKNAILIVEFAKD---L 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
            +    S  +   ++        V TS+A  + V+P+A+  G+   S A  +  G++    
Sbjct: 950  HERGHSLAEAALQAARLRFRPIVMTSLAFILGVVPLALATGAGASSQA-AIGVGVIGGML 1008

Query: 811  SS-----IFIAAPILLFIYDWRAKNA 831
            S+     +F+    +  +   R + A
Sbjct: 1009 SATLLGVLFVPIFFVFVLSLRRKRPA 1034


>gi|203284551|ref|YP_002222291.1| protein-export membrane protein [Borrelia duttonii Ly]
 gi|201083994|gb|ACH93585.1| protein-export membrane protein [Borrelia duttonii Ly]
          Length = 298

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/299 (23%), Positives = 136/299 (45%), Gaps = 7/299 (2%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHG--LNYGIDFKGGIQLGVLANRPVDLSV 593
                 F++     +  S           F +    N+G+DF  G+ +  + ++      
Sbjct: 1   MQKVFNFLKYGNKAIIASFCMIFLGFIYTFMYHGGYNWGVDFSSGVNINFVIDKAGIKDS 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT----EIVPLS 649
               + S               +          +    +   E+    +     E     
Sbjct: 61  DIKRVLSSFYKTFDVNEIIANDSKSHFDIIIKSEVTDYSLKKEIHSMLLDKLGIEFDANV 120

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I ++  +  + S  L  K ++ V ++   +L+Y+ +RF+  +A+ +I   + DI   + 
Sbjct: 121 EILDSYFIDSRFSSVLRTKSVLLVCLTFALILVYVTLRFRLSYAVSSIFATMHDILFVIA 180

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  LF IE N + + ++LT+IGYS+ND ++++DR+R+N +   T  SF ++++ SI++TL
Sbjct: 181 FLGLFRIEINSSIIVSILTIIGYSLNDTIIIFDRIRENSRNI-TDSSFLNILNISIHQTL 239

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            R++ TS+  F++V  + ++    I  F++    G+VV   SS+FIA+PILL  Y    
Sbjct: 240 SRTILTSITTFVAVFSIYIFTEGAIKDFSLIFMVGVVVGTFSSVFIASPILLSCYKKIK 298


>gi|161524788|ref|YP_001579800.1| multidrug efflux protein [Burkholderia multivorans ATCC 17616]
 gi|189350458|ref|YP_001946086.1| multidrug efflux protein [Burkholderia multivorans ATCC 17616]
 gi|160342217|gb|ABX15303.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia multivorans ATCC 17616]
 gi|189334480|dbj|BAG43550.1| HAE1 familyhydrophobic/amphiphilic exporter-1 [Burkholderia
           multivorans ATCC 17616]
          Length = 1045

 Score =  173 bits (437), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 71/615 (11%), Positives = 170/615 (27%), Gaps = 41/615 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G             + ++P   P              +       
Sbjct: 8   RPVFAWVIALFIMLGGAFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSATSSAGMASLYLTFRQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      +   ++     D      ++         +  +   +   +
Sbjct: 114 EARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTGVQLGEYASANVVQALRRVDGVGR 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKLAGHGLTASDIAAAVRAHNARVTVGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +      +      I    +       
Sbjct: 233 VFADAPL-------------KTPADFGAIALRSQADGAALYLRDVARIEFGGSDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L A   P     +          S +  
Sbjct: 280 VNGKVAVGMGIKLAPGSNAVATEKRVRAAMDELSAYFPPGVKYQIPYETSSFVRMSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    A LV +V+F+ +   +  L+    + + +  T  ++   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAAVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  + + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEERLAPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+++ +SI  S F A+S+  A+   +          +       +     
Sbjct: 460 GAVGNIYRQFALSLAVSIAFSAFLALSLTPALCATLLKPVDDGHHDKRGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   W V    L ++ ++ L          + +G   + V+  +  
Sbjct: 520 STQRYATRVGAMLNKPLRWLVVYGALTAVAALMLTRLPSAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIG 604
            L+    ++  ++  
Sbjct: 580 PLAETMQSVREVESY 594



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 78/200 (39%), Gaps = 6/200 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A  + +     +++   P               R  + K +  +I +A+ + + +++  +
Sbjct: 300 ATEKRVRAAMDELSAYFPPGVKYQIPYETSSFVRMSMNKVVTTLIEAAVLVFLVMFLFMQ 359

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + +  T G     G   N+  +  ++  IG  V+D +VV + +    
Sbjct: 360 NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENV--ER 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    ++  D   K++ +  G  V  ++      +PMA +GG+V      FA+ +A  I
Sbjct: 418 LMVEERLAPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAVSI 477

Query: 806 VVAASSSIFIAAPILLFIYD 825
             +A  ++ +   +   +  
Sbjct: 478 AFSAFLALSLTPALCATLLK 497



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           +  I              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAPGHSSGEAMAAMERIAATLPAGIGHAWSGQSFEERLSGAQAPLLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W   L  +  + L +   +    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPLAVMLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ +  +  +      +S      ++    L   V TS+A  + VLP+A   G+  G+  
Sbjct: 938  LIVEVAKDLLAQ---RMSLAQAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQT 994

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +  G++ A   ++F+     + +  
Sbjct: 995  AIGTGVLGGVIAATVLAVFLVPLFFVVVGR 1024


>gi|330882880|gb|EGH17029.1| multidrug/solvent transporter [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 410

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 47/431 (10%), Positives = 113/431 (26%), Gaps = 29/431 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++   ++ + ++ T  +L+  G T+   ++ G+V
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLLGTFGILAAFGFTINTLTMFGMV 399

Query: 422 LGIGLAVDSNI 432
           L IGL VD  I
Sbjct: 400 LAIGLLVDDAI 410



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 1/153 (0%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +      Q      + L        +++   + +      +    
Sbjct: 258 SQVRLKDVATVGLGAENYSTDSQFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P             +  E I   +  +I + + + + +++  + +   +    T+ + + 
Sbjct: 318 PPGMKVVYPYDTTPVVSESINGVVHTLIEAIVLVFLVMYLFLQNFRATVITTMTVPVVLL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            T G  A FG   N   +  ++  IG  V+D +
Sbjct: 378 GTFGILAAFGFTINTLTMFGMVLAIGLLVDDAI 410


>gi|300856537|ref|YP_003781521.1| putative protein-export membrane protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300436652|gb|ADK16419.1| predicted protein-export membrane protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 291

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 80/288 (27%), Positives = 136/288 (47%), Gaps = 10/288 (3%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R     IS++     I  + T GL YG+DFKGG  + +   +  +   V + ++     
Sbjct: 7   KRKIWFTISLIIIAIGIFTMATKGLEYGLDFKGGTVVEINVGQDFNKQDVDNIVKKYSGD 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
             S        N +         +      +  + K +      S++ N E +G  I +E
Sbjct: 67  FQS--------NKVDNKSISIKAATLSNNDVSNIVKAVKAKYKKSSLTNQENIGAVIGQE 118

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              K +  VI++ IAM IYI IRF+  F + AI +L  ++   L  +A+  +  +   +A
Sbjct: 119 TRTKALQAVIVAIIAMFIYIGIRFELSFGIAAIISLTHNVLVMLSVYAVLRVPIDSNFIA 178

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A LT+IGYSV+D +VV+DR+R+N + Y        + D S+ +TL RS+ T +   I++ 
Sbjct: 179 AALTVIGYSVHDTIVVFDRIREN-QKYMRGQEPIVVADASVTQTLARSINTVLTVVITLT 237

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + V     +  F+ P+  GI+    SSI IA+P  + I     +N +
Sbjct: 238 AVYVL-VPSVRVFSEPILIGIITGCYSSICIASPCWVIIKKHMLRNKK 284


>gi|256015116|ref|YP_003105125.1| hydrophobe/amphiphile efflux-1 family protein [Brucella microti CCM
           4915]
 gi|255997776|gb|ACU49463.1| hydrophobe/amphiphile efflux-1 family protein [Brucella microti CCM
           4915]
          Length = 1050

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 152/547 (27%), Gaps = 40/547 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QIQLTLTTQGRLT-------------DAKQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYDTTVFVSS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  L+   ++ +++I T A+L +LG +    S+
Sbjct: 338 TIHEVIKTLLEAFVLVVVVVFIFLGNFRATLIPTLAVPVSLIGTFAVLLVLGFSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E +             +         + I    +  L   V 
Sbjct: 398 FAMILAIGIVVDDAIVVVENVERVMAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        FA+T+ +++LIS   A+++  A+    ++  + +   +   +   L
Sbjct: 458 VAFIPGITGALYAQFALTVSVAMLISAINALTLSPALCGVFLKPHQGRKKSLYGRTMDKL 517

Query: 534 IPDCIAI 540
                 I
Sbjct: 518 SSGIEKI 524



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 73/218 (33%), Gaps = 9/218 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G++       E +                        +EL   G   +I++
Sbjct: 820  NNYRSASIQGNAAPGVSSGEALAAMAQVSKTTLPPGYGYEWTGTALQELQAAGQTSMILA 879

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +G + ++   +   +    + G+  ++ A   ++ LI  +
Sbjct: 880  LAVLFAYLFLVALYESWTIPVGVLLSVTAGLAGAMLALWITGLSNDIYAQIGIVVLIALA 939

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++        +           +     + TS A  + ++P+ +  G+ 
Sbjct: 940  SKNGILIVEFAKE---RREEGVPLEQAAIIGARQRFRPVMMTSFAFILGLVPLVIAVGAA 996

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    +  G++ A++  IF+   + + +   R 
Sbjct: 997  AASRRAVGTSVFGGMIAASAVGIFLIPMLYVVLERVRE 1034



 Score = 39.3 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + +  T     + G   N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 FRATLIPTLAVPVSLIGTFAVLLVLGFSANTISLFAMILAIGIVVDDAIVVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGI--V 806
           +  T +  ++   +++ E     +  ++      +P+A   G     +A   +   +  +
Sbjct: 422 MAETGLPPKEAAKQAMQEITAPIIAITLVLLSVFVPVAFIPGITGALYAQFALTVSVAML 481

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNARI 833
           ++A +++ ++  +  +F+   + +   +
Sbjct: 482 ISAINALTLSPALCGVFLKPHQGRKKSL 509


>gi|282891751|ref|ZP_06300232.1| hypothetical protein pah_c197o060 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498335|gb|EFB40673.1| hypothetical protein pah_c197o060 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 1039

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 68/679 (10%), Positives = 171/679 (25%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL            +++FP+ +P               + ++   
Sbjct: 9   RPILSTVFSIFILLAGLASLFF-----LPIEQFPNLLPP-------------QINVQTSY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +    +  L   +           +     +  + + F      E     V  
Sbjct: 51  AGASAQTVANSVAAPLEQQINNVENMIYMYSNSSYTGDYSLNVFFNIGSDIEEALINVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                   L  + +K+ +    +    ++             I  S       ++++  +
Sbjct: 111 QASIAQPLLPPEVQKSGVTILKQTPAILLAIGIQSPDDRYDEIFLSNYATVNIVEELQRT 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                    +     +    DP+ L +   +T  ++   +  N+       G        
Sbjct: 171 PGVSSVSIINDRTYAMRIWLDPALLVKYELSTQDVANAIIDQNSEYAVGRLGEPPTAGPT 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S                +    I          +              
Sbjct: 231 ELTISITSTGRLS-------------TPEEFNQIILKANPNGSVVYLKDVGYAQLGAQNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +     E        + +         +          
Sbjct: 278 NVVSKLNGVPTISIGVYQQFGANALQVAENIKNKMEEIASHFPQGITYSIPYDTTKFVNA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++   ++ ++++   A + ++G ++   ++
Sbjct: 338 SIHEVIKTIIEAGFLVALVVFVFLQNVRLTIIPLQAMVISIVGAFAGMLVMGLSINTLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            GIVL IG+ VD  I+V E +    R    S   +         + I    +      + 
Sbjct: 398 FGIVLAIGIVVDDAIVVIENVERNMRLLKTSANEAAHQAMREVTAPIIAIVLVLCAVFLP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-----IDINPL 528
           + F G   G   + FA+T+ +S++IS   A+++  A+   +I+ +K  S      D    
Sbjct: 458 VAFLGGITGQLYKQFALTISVSVIISGCVALTLSPALSAILIKPQKTPSKFTQLFDRFFD 517

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                                    I   +  +            + +G +   +     
Sbjct: 518 RFTNFYIKGAEWLVDHPWTGIFSFLIFCGLTGVLFYIIPTSFIPEEDQGYLITMINMPEG 577

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             L+             +     +              +   Q     ++K       P 
Sbjct: 578 ASLNRTEEVSAEAAKIALQNPAVEEVFELTGFSFIDSLNRTNQGSSFTVLKDWALRTDPK 637

Query: 649 STIQNTEIVGPKISRELIR 667
              +   +   K    + +
Sbjct: 638 EHAEAVLMDLSKKYSHIAQ 656



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 83/207 (40%), Gaps = 8/207 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 +E +     + +  S   +T         E+I+  I    + A+ + +++    
Sbjct: 306 ENIKNKMEEIASHFPQGITYSIPYDTTKFVNASIHEVIKTIIEAGFLVALVVFVFLQ--- 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +  +  +++ I        + G+  N   +  ++  IG  V+D +VV + + +NM
Sbjct: 363 NVRLTIIPLQAMVISIVGAFAGMLVMGLSINTLTLFGIVLAIGIVVDDAIVVIENVERNM 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +L  TS +  +   +++ E     +   +      LP+A  G   G +   FA+ ++  +
Sbjct: 423 RLLKTSAN--EAAHQAMREVTAPIIAIVLVLCAVFLPVAFLGGITGQLYKQFALTISVSV 480

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           +++   ++ ++  +   +   +   ++
Sbjct: 481 IISGCVALTLSPALSAILIKPQKTPSK 507



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 87/287 (30%), Gaps = 10/287 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                +         +          +     Q+ V + +   + +          G    
Sbjct: 752  FYVNNFNMFGRVYRVTIMAQPRLRENPLDIEQIYVKSTQGQMIPLKSLVTIKNTSGPNLV 811

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
              F+   +  +     PG S  Q   +     K      ++     E    K++     K
Sbjct: 812  SRFNSFPSAKINGSSAPGYSSGQAMRIMEEVAKEVLPSDMAFAWGGESYQEKVAGGTSTK 871

Query: 669  GIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             ++    S + + + +  +  +W   L  +  +   I        L  +  ++     ++
Sbjct: 872  MLMA---SLLMVFLILAGLYERWNIPLVIVLAIPFGIFGAFLSVWLAEMTNDIYFQIGLI 928

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            T+I  +  + +++ +     M  +   +S R+   ++        + TS+     V+P+ 
Sbjct: 929  TIIALAAKNAILIVEFA---MIKHEEGMSIREAAIEAGRLRFRAILMTSLTFIFGVVPLV 985

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 G +   S  + +  G++ A   ++F        I  +     
Sbjct: 986  FSSGAGANSRHSVGMGVMGGMIAATFLAVFFVPLFFNLIASYSEAKK 1032


>gi|325136641|gb|EGC59241.1| multiple transferable resistance system protein MtrD [Neisseria
           meningitidis M0579]
          Length = 1067

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 159/570 (27%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H       
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEDSVLSVIERNMNGVEGLDYLSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADIGSALSAQNVQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  +V
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFNSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 101/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADASARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|330875387|gb|EGH09536.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 735

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/595 (11%), Positives = 160/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRASFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTELDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGPDGEITRLKDVARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+ G        +         GS   
Sbjct: 283 LLNNQPAVAMPIFQRPGSNAIDISNDVRARMAELKKGFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVVLFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVEATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKAHDAPKDRFSRFLDKILGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQD 577



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +   +   K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVEATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|255007498|ref|ZP_05279624.1| AcrB/AcrD/AcrF family efflux transporter [Bacteroides fragilis
           3_1_12]
 gi|313145192|ref|ZP_07807385.1| multidrug efflux membrane fusion protein [Bacteroides fragilis
           3_1_12]
 gi|313133959|gb|EFR51319.1| multidrug efflux membrane fusion protein [Bacteroides fragilis
           3_1_12]
          Length = 1011

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/687 (12%), Positives = 189/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   GL+           +  +PS                        
Sbjct: 9   RRPVLSTVLTIIILLFGLI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPIDVKNAVDKENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E   R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLIIKEENDRIIRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S   
Sbjct: 273 KMNGVPMVGIVVIPQPGANHIKIADAVYERMEKMQKDLPEDVKYSYGFDNTKFIRASIYE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+I++F+ +   +  LV    I +++I    ++ L   ++ + S+  +V
Sbjct: 333 VKETVYVAFILVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLADFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFME 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+I +  S++IS F A++    +   ++  ++ ++        FF   + +
Sbjct: 453 GMTGRLFREFSIVVSGSVIISSFAALTFTPMLATKLLVKREKQNWFYMKTEPFFEGMNRL 512

Query: 539 AIQ----FMRARFWGVGISILFS-ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +    F+  R+  +    +   I +            ++ +  I +       V    
Sbjct: 513 YSRSLAAFLNKRWISLPFVAITIGIIAFLWNHIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S              G  N  + L+        Q  + E +   + +
Sbjct: 573 IRDYTEDINDLVDSIVPDAESVTARVSSGSGNVRITLKDMKDRDYTQMDIAEKLSAAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 76/198 (38%), Gaps = 7/198 (3%)

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
              KI +     T +       K  RE     +   I++ + + + +  +F+ +   L  +
Sbjct: 815  MDKIAKETLDDTFRTALTGDSKEYRESSSSLMFAFILAIVLIYLILAAQFESFKDPLIIM 874

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             T+ L I   L F    GI  N+ +   ++ LIG    + +++ +      +   T    
Sbjct: 875  LTVPLAIAGALVFMYFGGITMNIFSQIGIIMLIGLVAKNGILIVEFAN---QKQETGEDK 931

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIF 814
               I  +  + L   + TS +  + ++P+A   G            +  G++V+   +++
Sbjct: 932  LTAIKDAALQRLRPILMTSASTILGLIPLAFASGEGCNQRIAMGTAVVGGMLVSTLLTMY 991

Query: 815  IAAPILLFIYDWRAKNAR 832
            I   I  +I   R+   +
Sbjct: 992  IVPAIYSYISTNRSNKLK 1009



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        L     N+ ++ AV+  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLVPCIVIPVSLIGAFFVMYLADFSINVLSMLAVVLAVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +  ++   +   E     + T++       P+    G        F+I ++  
Sbjct: 410 YVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMEGMTGRLFREFSIVVSGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   R K  
Sbjct: 470 VIISSFAALTFTPMLATKLLVKREKQN 496


>gi|293609594|ref|ZP_06691896.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828046|gb|EFF86409.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1059

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/523 (12%), Positives = 145/523 (27%), Gaps = 33/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDSRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPSNSPLQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 I    +      
Sbjct: 236 NAQGRL---------------TTEQEFADIILKTAPEGAVTRLGDVARIELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIEAGLSPRDATYRAMREVSGPIIAIALTLVAVFVPLAFMT 460

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G   + FA+T+ +S +IS F ++++  A+   +++    K
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALAAMLLKGHDAK 503



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 118/395 (29%), Gaps = 18/395 (4%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
            ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 652  AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 711

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   +  M           ++D++ +           +      + G      F+   
Sbjct: 712  AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 771

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +          L +         V  S+L ++                   
Sbjct: 772  RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 831

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 832  INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 890

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++     L  I  + + I   L    L G + N+     ++ L+G +  + ++
Sbjct: 891  FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTGGDNNIFTQIGLMVLVGLACKNAIL 950

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  R+   L     +      ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 951  IVEFARE---LEMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 1007

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I + FG++      +F+     + I    +K+ 
Sbjct: 1008 MGIAVFFGMIGVTLFGLFLTPAFYVLIRTLNSKHK 1042



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 363 WRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S RD   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 423 A---GLSPRDATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 480 ISAFNSLTLSPALAAMLLK 498


>gi|166363306|ref|YP_001655579.1| preprotein translocase subunit SecF [Microcystis aeruginosa
           NIES-843]
 gi|166085679|dbj|BAG00387.1| protein-export membrane protein [Microcystis aeruginosa NIES-843]
          Length = 310

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 143/306 (46%), Gaps = 6/306 (1%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
             F +       +  +    +G  +   I    +      +        IQ+ +   +  
Sbjct: 1   MAFNVTKQRNFWWTVSALLTIGSILAMVISWFTIQAPLRPSLDFVGGTRIQIELACAKKN 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +     +  E   I D         +            ++A+ +  +++     +I    
Sbjct: 61  NCEKPLTTAEVQVILDEEGLGNSSVQVLDKYTLSVRTKTLAEEQRTKLLDTLNQKIGAFD 120

Query: 650 TIQNT-EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
              +  + VGP I +EL R G + +++S   + +Y+  RF+  +A  AI  L+ D+  TL
Sbjct: 121 PETSQIDTVGPTIGQELFRSGFLALLVSFFGIAVYLSFRFQRDYAFFAIVALLHDVLITL 180

Query: 709 GFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           G FA+ G+    E +   + ++LT++G+SVND VV+YDR+R+N  + T  +S  +++D +
Sbjct: 181 GVFAVLGLIAGVEVDSLFLVSLLTIVGFSVNDTVVIYDRVRENF-VNTPELSVDEIVDNA 239

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +++TL RS+ T++   + ++ + ++GG+ +  FA+ +  G V  A SSIFIA+ +L +  
Sbjct: 240 VSQTLTRSINTTLTTLLPLVAIFLFGGTTLKYFALALIIGFVAGAYSSIFIASTLLAWWR 299

Query: 825 DWRAKN 830
               + 
Sbjct: 300 SRSHRP 305


>gi|117920438|ref|YP_869630.1| acriflavin resistance protein [Shewanella sp. ANA-3]
 gi|117612770|gb|ABK48224.1| acriflavin resistance protein [Shewanella sp. ANA-3]
          Length = 1055

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/678 (10%), Positives = 180/678 (26%), Gaps = 46/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++        +  +D++P   P               + +    
Sbjct: 8   RPIFASVISIVIVLLGVIAMF-----KLPVDQYPYITPP-------------QVTISASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
               +    +  +  L   +     +   S +        +T++F      +  A  V  
Sbjct: 50  PGASSTTAAESVATPLEQEVNGVPNMIYMSSKSTNSGGTSVTITFDVGTNADLAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q  +  L +D +   +  + +  + ++      +      I  S          +   
Sbjct: 110 SAQQASGGLPIDVQTEGVTVSKDASVELLKLALTSNDERFDEIYLSNYATINIESALRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +   +      +     P  +     TT  +       N        G +   D  
Sbjct: 170 PGVGRTRNTGSRSYAMRIWLKPDAMAGYSLTTTDVINAIKAQNKESPAGTIGTQPNNDDI 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S +                   I                 +    +  
Sbjct: 230 SLTLPISVAGRLSSVQ-------------AFNEIIVRANPDGSIIRLRDIAGVELGSSAY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +            A L           V          
Sbjct: 277 TLQSQLNGENATILQVYLLPGANALEVTRKVKQTMAELSQKFPQGMKWEVFYDASIFIQE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +  L+   ++ +++I TLA +   G T+   S+
Sbjct: 337 SIDEVIHTLIEALVLVVLVVYLFLQNVRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIA 473
             +VL IG+ VD  I+V E +    + K  S   +  +        +  ++       + 
Sbjct: 397 LALVLAIGIVVDDAIVVVENVERLIHEKGMSAIDATRIAMKELSGALVATSLVLCAVFVP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINP 527
              L    G   R FA+ + +++LIS   A+++  A+   +              ++   
Sbjct: 457 VSFLAGITGIMYREFAVAITVAVLISTLVALTLSPALCALLLKPSKAPERGFFHWLNRKL 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A+    A+   +  +I+F      +          + +G   + +    
Sbjct: 517 DVGTNQYVGLVALTNKYAKRSYLAFAIMFGGTYFIMSHLPSSFMPDEDQGRFFIDMTLPD 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++   + L+  +    +              +    +       + +      E   
Sbjct: 577 GSTVNRTEAILKKAEQYVRANPAVAYSFTLAGENRRSGANQANGQFEVVLKPWAEREASH 636

Query: 648 LSTIQNTEIVGPKISREL 665
            +     + +   +   L
Sbjct: 637 ATVQSVMKAIDKDLKNVL 654



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +    + +        + G++ NL    A + LIG +  + +++ +      
Sbjct: 889  SWSIPVAVLLIAPIALLGAAVTTLISGMQSNLFFQVAFIALIGMAAKNAILIVEFAN--- 945

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L+    +      ++        + TSMA  + VLP+ +    G     S ++P+  G+
Sbjct: 946  QLHQQGRTRISAALEAATMRFRPILMTSMAFILGVLPLVLSEGPGAVSRQSISLPILGGM 1005

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            V+A +  I       +    W  K 
Sbjct: 1006 VLATTIGIVFVPLFFVTTAGWVKKK 1030



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 57/146 (39%), Gaps = 5/146 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  TL     FG   N  ++ A++  IG  V+D +VV + +     
Sbjct: 363 VRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSLLALVLAIGIVVDDAIVVVENV--ERL 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAFG--IV 806
           ++   +S  D    ++ E  G  V TS+      +P+  + G + I      +A    ++
Sbjct: 421 IHEKGMSAIDATRIAMKELSGALVATSLVLCAVFVPVSFLAGITGIMYREFAVAITVAVL 480

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           ++   ++ ++  +   +        R
Sbjct: 481 ISTLVALTLSPALCALLLKPSKAPER 506


>gi|110835607|ref|YP_694466.1| AcrB/AcrD/AcrF family protein [Alcanivorax borkumensis SK2]
 gi|110648718|emb|CAL18194.1| AcrB/AcrD/AcrF family protein [Alcanivorax borkumensis SK2]
          Length = 1030

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 57/525 (10%), Positives = 149/525 (28%), Gaps = 39/525 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +I   G+   L     +  +  +P   P               +     
Sbjct: 9   KRPVFATVISLLIVVFGVSALL-----KLPIREYPDIDPPEV---------SVSVDYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   S ++         R    + T+ F   R  +  A+ V   +  
Sbjct: 55  APEVIDTQIIQVIEGAISGVEGVRKIESRSRLGSARTTVEFTLERDVDIAANDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  + +  ++         I+        +     E +    R  +D+  + +   
Sbjct: 115 VLNRLPEEAESPVIAKADADARPIIWVTLTSSSLAPQ--ELTDFAERSLVDRFAMLDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +    D   +     T   +       N               +     
Sbjct: 173 EVIIGGERRYAMRVWLDRQSMAANQVTVTDIEQALRNNNVELPAGKLESESRAFTIRADN 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +   ++     G           +   +       
Sbjct: 233 RLAT--------------------VQAFENLVVSRQGDYLLRLGDVARVALGVENDDSVL 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +     +        +R          +          S   
Sbjct: 273 RANGQTAIGLGVVRQSKANTVAVSDRVREEIVAVRDNLPADIQLDINSDESLFIRASIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+ V+F  +   +  L+   +I ++VI       ++  ++ + ++  ++
Sbjct: 333 VLITLGISVVLVIAVIFAFLGNLRATLIPAVTIPVSVIGAFIGFGVMDFSINVLTLLALI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I+    + +S   +  +G  +    +  + +T +   V + F G
Sbjct: 393 LAIGLVVDDAIVMLENIQRRIDEGESRLVAAYLGARQVAFAVVATTLTLVAVFVPISFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G     F  T+  +++IS   A+S+   +    +     K  
Sbjct: 453 GDVGRLFSEFGFTLASAVIISSIVALSLAPMLCSRWLHRHSHKER 497



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 63/153 (41%), Gaps = 7/153 (4%)

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ + + + +  +F+ W   L  + T+ L +   +   ++ G   N+ +   ++ L+G  
Sbjct: 859  LALVIVFLVLAAQFESWIHPLIIMLTVPLALAGAVIAISITGDSLNIYSQIGMIMLLGLM 918

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ +      +L     S +D I +         + T ++     +P+ +    G
Sbjct: 919  AKNGILIVEFAN---QLRDQGRSVKDAIYEGAIVRFRPVLMTGVSTIFGAVPLVLATGAG 975

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                 +  + +  G++ A   ++FI   +  ++
Sbjct: 976  AESRFTIGVVILGGLLFATVLTLFIIPVLYQWL 1008



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 88/257 (34%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    +  + L  V      ++  D   +        L  ++    ++VA +  +    
Sbjct: 244 VVSRQGDYLLRLGDVARVALGVENDDSVLRANGQTAIGLGVVRQSKANTVAVSDRVREEI 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAIT 698
             + + +P     +         R  IR+ ++ + IS + ++  I          L    
Sbjct: 304 VAVRDNLPADIQLDINSDESLFIRASIREVLITLGISVVLVIAVIFAFLGNLRATLIPAV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ + +      F +     N+  + A++  IG  V+D +V+ + +    +      S  
Sbjct: 364 TIPVSVIGAFIGFGVMDFSINVLTLLALILAIGLVVDDAIVMLENI---QRRIDEGESRL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFI 815
                   +     V T++      +P++  GG V      F   +A  +++++  ++ +
Sbjct: 421 VAAYLGARQVAFAVVATTLTLVAVFVPISFMGGDVGRLFSEFGFTLASAVIISSIVALSL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           A  +        +   R
Sbjct: 481 APMLCSRWLHRHSHKER 497


>gi|83649548|ref|YP_437983.1| cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
 gi|83637591|gb|ABC33558.1| Cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
          Length = 1057

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/595 (11%), Positives = 164/595 (27%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  MI   G L        +  +  +P  +P   +          +       
Sbjct: 10  RPILAGVLSIMIFIAGALAVF-----ELPITEYPEVVPPTVV---------VNATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +     V   +  
Sbjct: 56  PKVIAETVASPLEQEINGVENMLYMSSQASSDGRMALTVTFALGTDLDEAQVDVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++            +  +        D +   E   
Sbjct: 116 ALPRLPNEVQRLGVTTEKSSPDLTMVVHMVSPDNRYDTLYLANYATLNVKDALSRIEGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP ++  L  TT+ +       N +             +   Q 
Sbjct: 176 AVRVFGAGDYSLRIWLDPEKVAALNLTTSDVLHAIREQNRAVAAGTLAAPPSPSASDFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+  K  +                 +    I                 +    +      
Sbjct: 236 LINVKGRLESTE-------------EFENIIVRVGPNGEMTRLKDVGRVELGSSTYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +     +      A L+          +         GS   
Sbjct: 283 LLNNKPAAALPIFQRPGSNAIEISDNVRATMAELKKTFPEGVDYSIVYDPTVFVKGSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T A++ L G +L   S+ G+V
Sbjct: 343 VVQTLLEAILLVVIVVVLFLQTWRASIIPLVAVPVSLVGTFAVMYLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I  +++      +   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGMTPVEATKQAMKEVTGPIIATSLVLSAVFIPTAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSRFFLIP 535
              G   + FA+T+ +S +IS   ++++  A+   +++    K      I        + 
Sbjct: 463 GLTGQFYKQFALTIAISTIISTINSLTLSPALSAVLLKPHSAKKDLLSRIIDGLFGRWLF 522

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A               + +L  +G   G+ +       V      D
Sbjct: 523 APFNKFFAKASNAYTWGVKRIIRGGLVILVVYGGLIGLTYHQFQATPVGFVPQQD 577



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 7/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   +    L G + N+     ++ L+G +  + +++ +  ++  
Sbjct: 903  SWSLPLAIILIVPMTLLSAMTGVILSGGDNNIFTQIGLIVLVGLATKNAILIVEFAKE-- 960

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                  +S  D I ++    L   + TS+A  + V P+    G+        M   +   
Sbjct: 961  -RQDAGLSLMDAILEACRLRLRPILMTSLAFIMGVAPLVYSSGAG-AEMRHAMGVAVFSG 1018

Query: 809  AS-SSIF--IAAPILLFIYDWRAKNA 831
                +IF  +  P+   +     K  
Sbjct: 1019 MIGVTIFGLLLTPLFYHLIRRWVKKR 1044



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 62/135 (45%), Gaps = 7/135 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLVGTFAVMYLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIV 806
           L    ++  +   +++ E  G  + TS+      +P   + G  G     FA+ +A   +
Sbjct: 425 L---GMTPVEATKQAMKEVTGPIIATSLVLSAVFIPTAFISGLTGQFYKQFALTIAISTI 481

Query: 807 VAASSSIFIAAPILL 821
           ++  +S+   +P L 
Sbjct: 482 ISTINSL-TLSPALS 495


>gi|15963945|ref|NP_384298.1| putative multidrug-efflux system transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|307306357|ref|ZP_07586101.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti BL225C]
 gi|307319244|ref|ZP_07598673.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti AK83]
 gi|15073120|emb|CAC41579.1| Putative multidrug-efflux system transmembrane protein
           [Sinorhizobium meliloti 1021]
 gi|306895080|gb|EFN25837.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti AK83]
 gi|306902199|gb|EFN32796.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sinorhizobium meliloti BL225C]
          Length = 1048

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 182/687 (26%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++       P   + ++P   P               + +  + 
Sbjct: 8   RPIFAWVVAIFIMIAGIIAI-----PLLPVSQYPDVAPP-------------QISINTNY 49

Query: 63  DDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTL 117
               +      +    ++  + ++       S     +  I  +F         +  +  
Sbjct: 50  PGASSQDTYQSVTRLIEDELNGVEGLLYFESSTSSSGSVSIDATFQPGTDPSQASVDIQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q V  +L    ++  +         +++           AI     + R  + +I   
Sbjct: 110 RVQRVEPRLPDPVRQQGVQVDEAGAGFLLIISLTSTDGSMDAIGLGDYLSRNVLSEIQRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP ++  L  T A ++      N        G +    + 
Sbjct: 170 PGVGRAQLF-ATERSMRVWLDPDKMLGLNLTAADVTAAIQAQNAQIASGSIGAQPNPITQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K ++S                +    +                 +       
Sbjct: 229 QVTAPVVIKGQLS-------------SPEEFGAIVLRANADGSAVRLRDVARLEIGGESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 TFSTRLNGSPSAAIAVQLSPSGNAMSTSAAIKARMDELAEFFPEGLEYSIPYDTSPFVAV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV +V+F+ +   ++ ++    + + ++ T A++  +G ++ + ++
Sbjct: 336 SIEKVLHTLVEAVGLVFLVMFLFLQNVRYTIIPTIVVPVALLGTCAVMLAMGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  +   +      +    +    +      + 
Sbjct: 396 FGMVLAIGILVDDAIIVVENVERIMSEEGLTPKDATRKAMKQITGAVIGITLVLASVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + FF G      R F++TM +SIL S   A+S+  A+             + K       
Sbjct: 456 MAFFPGAVGVIYRQFSLTMVVSILFSALLALSLTPALCASFLKQVPKGHHHAKRGFFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                              R  G  + I  ++ +        L             ++  
Sbjct: 516 NRGFDRTSHGYTRAVGGIVRRTGRFMVIYLALLAGLGWAFLQLPSSFLPDEDQGFVIVMM 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    +      E ++  +  F         +    +    S     +  +  K  +E  
Sbjct: 576 QLPSEATANRTTEVIEQTETIFGQEKAVDTIVAINGFSFFGSGQNAGLAFVTLKDWSERD 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
             ++ Q+          ++       +
Sbjct: 636 ADNSAQSIAGRATMAMSQIKDAISFAL 662



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 80/221 (36%), Gaps = 6/221 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    S +        +       G++++ +  ++    ++ E  P 
Sbjct: 260 VRLRDVARLEIGGESYTFSTRLNGSPSAAIAVQLSPSGNAMSTSAAIKARMDELAEFFPE 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            I K +  ++ +   + + +++  +   + +     + + +  T
Sbjct: 320 GLEYSIPYDTSPFVAVSIEKVLHTLVEAVGLVFLVMFLFLQNVRYTIIPTIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  V+D ++V + +     +    ++ +D   K++ +
Sbjct: 380 CAVMLAMGFSINVLTMFGMVLAIGILVDDAIIVVENV--ERIMSEEGLTPKDATRKAMKQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
             G  +  ++      +PMA + G+V      F++ M   I
Sbjct: 438 ITGAVIGITLVLASVFIPMAFFPGAVGVIYRQFSLTMVVSI 478



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 84/796 (10%), Positives = 205/796 (25%), Gaps = 46/796 (5%)

Query: 56   LVLEVDEDDFVNGFLQMYSD----ELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFK 108
            +  +V     + G L    +     LR+      +    V  +       T S   +   
Sbjct: 226  ITQQVTAPVVIKGQLSSPEEFGAIVLRANADGSAVRLRDVARLEIGGESYTFSTRLNGSP 285

Query: 109  ENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME-II 167
                  V L                        E      + +I    S  +  S+E ++
Sbjct: 286  SAAIA-VQLSPS---GNAMSTSAAIKARMDELAEFFPEGLEYSIPYDTSPFVAVSIEKVL 341

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
               ++ +G+    +     +     +P    P  L         M F   +         
Sbjct: 342  HTLVEAVGLVFLVMFLFLQNVRYTIIPTIVVPVALLGTCAVMLAMGFSINVLTMFGMVLA 401

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
             G+    D+      VE  +   G+    AT     +    V+ I+              
Sbjct: 402  IGILV-DDAIIVVENVERIMSEEGLTPKDATRKAMKQITGAVIGITLVLASVFIPMAFFP 460

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK--LN 345
              +G          V++         S    +  +F  +         R          +
Sbjct: 461  GAVGVIYRQFSLTMVVSILFSALLALSLTPALCASFLKQVPKGHHHAKRGFFGWFNRGFD 520

Query: 346  IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL-------YGKWGLVADFSIFLNV 398
                    A  G          I   L+  + +  +            G V       + 
Sbjct: 521  RTSHGYTRAVGGIVRRTGRFMVIYLALLAGLGWAFLQLPSSFLPDEDQGFVIVMMQLPSE 580

Query: 399  ILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV------NERIREENRKNQSVFCSL 452
                    ++  T T+      V  I      +            +  ++   +    S 
Sbjct: 581  ATANRTTEVIEQTETIFGQEKAVDTIVAINGFSFFGSGQNAGLAFVTLKDWSERDADNSA 640

Query: 453  DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
                 RA   +         A       G G   GF+  +     +           ++ 
Sbjct: 641  QSIAGRATMAMSQIKDAISFALSPPAIQGLGTTGGFSFRLQDRAGLGQAALAEARDQLLD 700

Query: 513  FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG 572
               + K +  +    +     +   I  +                  ++   + +     
Sbjct: 701  LASQSKVLTGVRFEGMPDAAQVSVNIDREKANTFGVTFADINSTISTNLGSSYVNDFPNA 760

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               +          R     ++  N+ +   G +    F   +      Q    +     
Sbjct: 761  GRMQRVTVQADETKRMQTADLLNLNVRNSNGGMVPLSAFADVEWVKAPTQTVGYNGYPAV 820

Query: 633  RVLEMVKKKITEIVPLSTIQN---------TEIVGPKISRELIRKGIVGVIISAIAMLIY 683
            R+        +    ++ ++                +  +E+       ++I+   +L++
Sbjct: 821  RISGEAAPGYSSGDAIAEMERLVAELPAGFGYEWTGQSLQEIQSGSQAPLLIALSCLLVF 880

Query: 684  I---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            +    +   W   +  I  + L +   +    +  +  ++     ++ +IG S  + +++
Sbjct: 881  LCLAALYESWSIPVSVIMVVPLGVIGAVLAVTMRDMPNDVYFKVGLIAIIGLSAKNAILI 940

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSF 797
             +  ++   L     S  D   ++ +      + TS+A  + VLP+A+  G       + 
Sbjct: 941  IEFAKE---LREQGKSLIDSTLEAAHLRFRPILMTSLAFTLGVLPLAIATGASSGSQRAI 997

Query: 798  AIPMAFGIVVAASSSI 813
               +  G++ A   +I
Sbjct: 998  GTGVMGGMISATVLAI 1013


>gi|296122541|ref|YP_003630319.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces limnophilus DSM 3776]
 gi|296014881|gb|ADG68120.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces limnophilus DSM 3776]
          Length = 1102

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/657 (11%), Positives = 177/657 (26%), Gaps = 45/657 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD- 61
              +  +L  ++   G +        +  + +FP+  P                 ++VD 
Sbjct: 10  RPIFAAVLSILVTLAGAIALF-----RLPIAQFPAVAPP---------------TVQVDC 49

Query: 62  -EDDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKV 115
                 +  +       +   +   E +   S +   +    +T++F            V
Sbjct: 50  NYPGASSLVVAQTIAAPIEQQVNGVEEMLYMSSQSTSDGSYTLTVTFKPGVDLNLAQVLV 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +     +L    +   + T       ++    N        +  S   +    D+I 
Sbjct: 110 QNRVSLARPQLPDVVRATGVTTKKRAPDILLTISINSPDNRYDQLYISNYALLHLRDEIA 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 + L   +    +    DP +L     T   +       N        G      
Sbjct: 170 RIPGISEVLLFGQRDYSMRVWIDPEQLSTRNLTANDVVNAIREQNFQVAAGSIGQPPHSG 229

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S   Q  +     ++                    DI       +         +     
Sbjct: 230 SSTRQIPLAVVGRLTNET--------------AFEDIVVRADHDQLIRIRDIGRVELGAR 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                                +  +   T +        L           +        
Sbjct: 276 SQDINNRFDGKPTVGLAIFQLSDANALTTADLIKAKIEELSKDFPEGLAYEIGYDTTPFI 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S             LV +V+ + +   +  ++   ++ + ++ T A ++++G ++   
Sbjct: 336 RESIDEVFKALRDATILVALVVLVFLQGWRPAIIPLIAVPVAIVGTFAAMAVVGFSINNL 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT---ALI 472
           ++ G+VL IG+ VD  I+V E ++    +  +   +           +    +      I
Sbjct: 396 TLFGLVLAIGIVVDDAIVVVEAVQHHISQGLNPREAAVRAMDEVAGPVVAVGLVLSSVFI 455

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
               +    G   R FA+T+ +S ++SM  ++++  A+   +++ K  +  DI      F
Sbjct: 456 PCAFITGIVGEFFRQFALTIAISTILSMLNSLTLSPALAAILLQGKDDRP-DILTRIINF 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L     A      R      +          +    +  G+ F  G     L    +   
Sbjct: 515 LFGWFFAAFDWSFRTSTSLYTRFVGQLLRIPVLVLIVYGGLLFLTGWGFNQLPKGFIPSQ 574

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +   + S+Q+ D +      +    +         V     +      ++      
Sbjct: 575 DMGYLIASIQLPDSAAAGRTRDTVARIEEITLKTPGVKNVNSIAGNSFILSSYGSNF 631



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 69/196 (35%), Gaps = 7/196 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
             + +++        +         + R+    G+    ++   + + +   ++ W   L 
Sbjct: 850  DMVEQLAASELPIGLATEWSELSYMERQAGNTGMFVFYMAIAFVFLVLAALYESWALPLA 909

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             I  + + I  ++   A   ++ N+      + LIG +  + +++ +  R          
Sbjct: 910  VILVVPMCILSSITGVAYAAMDINVFTQIGFVVLIGLACKNAILIVEFAR---SRRHEGA 966

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
            + R+   ++ +  L   + TS A  + V+P+ +    G  +  +  + +  G++      
Sbjct: 967  TIREATLEACHLRLRPILMTSCAFILGVIPLILATGAGAEMRRTLGVAVFSGMLGVTCFG 1026

Query: 813  IFIAAPILLFIYDWRA 828
            I +       I     
Sbjct: 1027 ILLTPVFFYVIEHLSE 1042



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 96/255 (37%), Gaps = 7/255 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    ++ + +  +       +  DI+ +        L   Q    +++    +++   
Sbjct: 253 VVRADHDQLIRIRDIGRVELGARSQDINNRFDGKPTVGLAIFQLSDANALTTADLIKAKI 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
           +++++  P               RE I +    +  + I + + + +  + W  A+  + 
Sbjct: 313 EELSKDFPEGLAYEIGYDTTPFIRESIDEVFKALRDATILVALVVLVFLQGWRPAIIPLI 372

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + I  T    A+ G   N   +  ++  IG  V+D +VV + +       +  ++ R
Sbjct: 373 AVPVAIVGTFAAMAVVGFSINNLTLFGLVLAIGIVVDDAIVVVEAV---QHHISQGLNPR 429

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   ++++E  G  V   +      +P   + G  G     FA+ +A   +++  +S+ +
Sbjct: 430 EAAVRAMDEVAGPVVAVGLVLSSVFIPCAFITGIVGEFFRQFALTIAISTILSMLNSLTL 489

Query: 816 AAPILLFIYDWRAKN 830
           +  +   +   +   
Sbjct: 490 SPALAAILLQGKDDR 504


>gi|254507228|ref|ZP_05119365.1| protein-export membrane protein SecF [Vibrio parahaemolyticus 16]
 gi|219549938|gb|EED26926.1| protein-export membrane protein SecF [Vibrio parahaemolyticus 16]
          Length = 300

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/284 (25%), Positives = 145/284 (51%), Gaps = 6/284 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              + R+    +S+   I S+  L   GLN G+DF GG+   V  ++ +    + + L+ 
Sbjct: 8   NIRKIRYVTSIVSVALMIVSLVALGARGLNMGLDFTGGMVTEVQVDKSLTSHDLLNTLKP 67

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 S  + D    +++R                 + + ++++    ++ ++ +VG +
Sbjct: 68  ELGEFTSVTHSDDAGRWVIRYPIPEAGQTIPD-----INQVLSKVSHHVSVVSSSMVGSQ 122

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +  +L+ +G + ++IS + +L Y+  RF+W  A G++  LI D+   LGFFA   +EFNL
Sbjct: 123 VGDDLVDQGGLALLISMMCILGYLCFRFEWRLASGSLLALIHDVVLVLGFFAATQMEFNL 182

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T  AA+L ++GYS+ND +++ DR+R+ + +   S     + D+++  T  R++ TS    
Sbjct: 183 TVFAAILAILGYSLNDSIIIADRIRE-LLVAKQSTPTETINDQAVIATFSRTMVTSGTTL 241

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           ++V  + + GG+ +  FA+ M  GI+    SSI I   +  ++ 
Sbjct: 242 MTVSALWLMGGNALEGFAVAMFIGILSGTWSSISIGTVLPEWLK 285


>gi|57237421|ref|YP_178434.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni RM1221]
 gi|57166225|gb|AAW35004.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni RM1221]
 gi|225423357|gb|ACN91186.1| CmeB [Campylobacter jejuni]
 gi|315057789|gb|ADT72118.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni S3]
          Length = 1040

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 184/683 (26%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  + +          F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 537 CIAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    ++  R     +     + +I  L+    N  +  +    + +        S
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEEDQGLM-ISIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
                  K          V + +
Sbjct: 641 QIIAELNKKFAFDRNASSVFIGL 663



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  + + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|121612937|ref|YP_001000077.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|167005035|ref|ZP_02270793.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni 81-176]
 gi|18496807|gb|AAL74245.1|AF466820_2 CmeB [Campylobacter jejuni subsp. jejuni 81-176]
 gi|87250188|gb|EAQ73146.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni 81-176]
          Length = 1040

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 184/683 (26%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  + +          F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 537 CIAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    ++  R     +     + +I  L+    N  +  +    + +        S
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEEDQGLM-ISIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
                  K          V + +
Sbjct: 641 QIIAELNKKFAFDRNASSVFIGL 663



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|167624824|ref|YP_001675118.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167354846|gb|ABZ77459.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella halifaxensis HAW-EB4]
          Length = 1037

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/630 (11%), Positives = 183/630 (29%), Gaps = 42/630 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++       P+  ++RFPS  P +          G +L      
Sbjct: 8   RPVFAWVIAILISIAGVIAI-----PKLAVERFPSVAPPSI---------GLYLSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +N  +    +   S +         S       IT++F +    E    ++   ++ 
Sbjct: 54  PQTINDSVVTLIEREISGINGLLYFSSSSDASGSASITVTFENGTDPEMAQVEIQNKIRA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L +  ++  +   T    +++              + S  ++R  +++I       
Sbjct: 114 IEPRLPLAVRQIGITVETTSSNNLMYLGLISPSGEYSEQQLSDYMVRNIVEEIKRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP  L     T   ++      N        G           +
Sbjct: 174 RVQMYGA-EFAMRIWVDPVALTGYNLTMEDVTSAIAEQNVQISPGKVGDSPTSGGQMTVH 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +    + A          +       L   
Sbjct: 233 SLTAQGQL-------------ETPEQFRAIVLRSNIDAGMVQLGDVAKVELGAQNYLFSN 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +   T +      A L+          +          S   
Sbjct: 280 RENGQQSTSAAIQLSPGANAIATSQGIRDRLAELKLAMPSNMDYSITSDAAIFAKISIQK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+      + ++ T A++ L+G ++ + ++ G+V
Sbjct: 340 VVVTLLEAMVLVFLVMYLFLQKIRYTLIPAIVAPIALLGTFAVMWLMGFSINVFTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +             + +      YS +           + + F 
Sbjct: 400 LAIGIIVDDAIVVVENVERVMAETGLPPKAATEQAMKSIYSAVIGITAVLSAVFIPMAFA 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPL 528
               G   + F++ M +SIL S F A+++  A+   +++                + N  
Sbjct: 460 SGSVGTIFQQFSLAMAVSILFSAFLALTLTPALCATLLKPLTEHDHKSGGFFGWFNRNFH 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +    +   +A    R         +L   C              + +G     +     
Sbjct: 520 NFTQKVTAGVAHLVKRTGRVMALYIVLVVACIYSFTLVPSTFLPEEDQGYYMTSIQLPPD 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             +      +  ++   +  +  D   + L
Sbjct: 580 ATVERTMDVVSKIEAFTLGREAIDASMSVL 609



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 90/244 (36%), Gaps = 6/244 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              V L  V       Q    S +    +            +++A ++ +     ++   
Sbjct: 257 AGMVQLGDVAKVELGAQNYLFSNRENGQQSTSAAIQLSPGANAIATSQGIRDRLAELKLA 316

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
           +P +   +        ++  I+K +V ++ + + + + +++   K  + L       + +
Sbjct: 317 MPSNMDYSITSDAAIFAKISIQKVVVTLLEAMVLVFLVMYLFLQKIRYTLIPAIVAPIAL 376

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T     L G   N+  +  ++  IG  V+D +VV + +     +  T +  +   +++
Sbjct: 377 LGTFAVMWLMGFSINVFTMFGMVLAIGIIVDDAIVVVENV--ERVMAETGLPPKAATEQA 434

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +       +  +       +PMA   GSV      F++ MA  I+ +A  ++ +   +  
Sbjct: 435 MKSIYSAVIGITAVLSAVFIPMAFASGSVGTIFQQFSLAMAVSILFSAFLALTLTPALCA 494

Query: 822 FIYD 825
            +  
Sbjct: 495 TLLK 498



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 62/146 (42%), Gaps = 7/146 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            + +  ++ S + + + +   ++ W   L  I  + L I   +GF  L G+  ++     +
Sbjct: 865  QTVWLLLFSMLVIFLVLAALYESWSIPLAVILVVPLGIIGAVGFVLLNGVANDVFFKVGL 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +     I   D + ++  + L   + TS+A    ++P+
Sbjct: 925  VTIIGLSAKNAILIVEFAK---QAQAEGICLVDSVLQATKQRLRPILMTSLAFSCGIIPL 981

Query: 787  AVWGGSV--IGS-FAIPMAFGIVVAA 809
             +  G    I +     +  G+    
Sbjct: 982  YLATGPSSEIQNSIGTGVLGGMFTGT 1007


>gi|121534445|ref|ZP_01666268.1| acriflavin resistance protein [Thermosinus carboxydivorans Nor1]
 gi|121306938|gb|EAX47857.1| acriflavin resistance protein [Thermosinus carboxydivorans Nor1]
          Length = 1032

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/620 (11%), Positives = 180/620 (29%), Gaps = 56/620 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   GL     N  P   +D +P                   +     
Sbjct: 8   KRPVFTTMLVLLLVVFGL-----NSYPSLGIDLYPDVEFPIV---------NVTVTYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +          R+  +++TL F      +  A++V   + G
Sbjct: 54  SPEEMESLITKPIEDAVSSVSGIKTLSSVSREGVSQVTLEFEFGTNPKLAANEVREKVAG 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L     + ++         I+    + D    +  E     +    D++   +   
Sbjct: 114 VRRRLPDQIDEPVVQRYDITAQPIIYFSLSSDTRSRN--EIRKLAVDIVKDELQRLDGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++    DP +L     T  ++       N +  G     +    +     
Sbjct: 172 EVNVYGATEREILLYADPKKLEAYGITFQQILDIVNSQNLNTPGGRVNEKGTELTVRTLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             ++  +I                     +I       R        N+           
Sbjct: 232 KFKNVEDIK--------------------NIIVANQDGRLIRLGDVVNVVDGWGEERVHA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS-LPIKLNIVEERNVGADLGSDS 360
                         ++  +     E A      +++    P     +   +      S  
Sbjct: 272 RTNGTPSVLVAVQKQSGTNTVDVAERAKKAMQRMQSTVLPPDIKVTIVRDSSTYIRDSVE 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +      L +I+ F+ +   +  ++   +I  +VI T  L+  +  TL   S+ G+
Sbjct: 332 DVMVSLFFGGLLAVIITFLFLQNIRATIIGAIAIPTSVIATFFLMKAMNFTLNNMSLMGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ +D  I+V E I     + +S   +   G +     +  +  + L   V +   
Sbjct: 392 SLAVGILIDDAIVVIENIFRHLEEGKSAMQAARDGTAEIALAVLATTFSILAVFVPVGNM 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------------IRYKKMK 521
           G   G   + F +T+  ++  S+F A ++   +  +                      + 
Sbjct: 452 GLVIGQFFKQFGLTVAFAVAFSLFVAFTLTPMLSAYWLKASHGEAGKLKGGWRWLQNILD 511

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +   +S   +  D +     R +       +   +  + L F           G   +
Sbjct: 512 AWERGFVSLRQVYQDVLRWALQRPKKIVAVALLSLFLNVLLLPFLGVEFQPTYDSGEFNI 571

Query: 582 GVLANRPVDLSVVRSNLESL 601
            + A     L  +R  +  +
Sbjct: 572 NMAAPAGTSLEKMRELVGPV 591



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/238 (10%), Positives = 69/238 (28%), Gaps = 7/238 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            VV       +    +  N        V+ Q          R  + +++  + ++P    
Sbjct: 256 DVVNVVDGWGEERVHARTNGTPSVLVAVQKQSGTNTVDVAERAKKAMQRMQSTVLPPDIK 315

Query: 652 QNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                      R+ +   +V +     +A++I           +     +   +  T   
Sbjct: 316 VTIVRDSSTYIRDSVEDVMVSLFFGGLLAVIITFLFLQNIRATIIGAIAIPTSVIATFFL 375

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                   N  ++  +   +G  ++D +VV + +    +      S          E   
Sbjct: 376 MKAMNFTLNNMSLMGLSLAVGILIDDAIVVIENI---FRHLEEGKSAMQAARDGTAEIAL 432

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + T+ +     +P+   G   G     F + +AF +  +   +  +   +  +   
Sbjct: 433 AVLATTFSILAVFVPVGNMGLVIGQFFKQFGLTVAFAVAFSLFVAFTLTPMLSAYWLK 490



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 91/237 (38%), Gaps = 8/237 (3%)

Query: 594  VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            VR    +           D E      + Y     V+   ++  VK+ +  +        
Sbjct: 784  VRLADIADVRLASGPTQIDREARQRQVIVYANTVGVSAGEIINKVKEIVPTLNLPLGYSY 843

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
              +   +  +E  ++    +I++ + + + +   F+ +      + +L   +   +    
Sbjct: 844  KFVGQAQTMQESFQEIAKALILAVVLIYMVLAAEFESFVHPFTIMLSLPFSLIGAILGLL 903

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            + G   N+ ++  V+ L+G    + +++ D      +L +  +   + + ++    L   
Sbjct: 904  VSGKTINIMSLIGVIMLMGLVTKNAILLVD---YTNQLRSRGMGITEALVEAGAVRLRPI 960

Query: 773  VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + T+MA    +LP+A+    G  +  S  + +  G++ +   ++ I  P++  + D 
Sbjct: 961  LMTTMAMIFGMLPVALGIGAGAELRSSMGVVLIGGLITSTFLTL-IVVPLVYLLVDR 1016


>gi|258541243|ref|YP_003186676.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256632321|dbj|BAH98296.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256635378|dbj|BAI01347.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256638433|dbj|BAI04395.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256641487|dbj|BAI07442.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256644542|dbj|BAI10490.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256647597|dbj|BAI13538.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256650650|dbj|BAI16584.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256653641|dbj|BAI19568.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 1051

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/569 (11%), Positives = 149/569 (26%), Gaps = 41/569 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L        +  + ++PS  P               + + V  
Sbjct: 10  RPIFAWVISLIIMLVGGLSIF-----RLPISQYPSIAPP-------------QIAISVTY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        I   S    Q +I L+FA     +    +V  
Sbjct: 52  PGASADTVNDTVVRPILQQMFGLDHLEYISAQSYASGQMEIDLTFAQGTDPDIAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  +     L  T   +  +++          +  + +  +     D +   
Sbjct: 112 KLQLAQPKLPTEVTAQGLSITKAVKNFMLVVAFISTDGSMNGGDIADYVASNISDPLSRV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L     T   +       N        G        
Sbjct: 172 SGVGDHTLFGS-EYSMRIWMDPAKLFNYGLTVRDVETAIQTQNIQLSSGELGGLPATKGI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     ++                +    +   +    +        +       
Sbjct: 231 RLDATIIGPQRLT-------------SPEEFQRILLKVQPDGSQVRIRDIAKVELGPQTY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T          L     P    +           
Sbjct: 278 NTNSYYNNMPASGMALKLAPGANQIATEAAVRAQLHELEQFFPPGLKTVYPLDTEPFITL 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV +V+ + +   +  L+   ++ + ++ T  LL+LLG ++   ++
Sbjct: 338 SIGEVVETLLEAIGLVFLVMLVFLQNFRATLIPTIAVPVVLLGTFGLLNLLGYSINTLTM 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIA 473
             +VL +GL VD  I+V E +     + Q S   +  +       A   I        + 
Sbjct: 398 LAMVLAVGLLVDDAIVVVENVERVMTEKQLSPREAARVSMDEISGALVGIVLVLSAVFLP 457

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
                   G   R F+IT+  ++ +S+  A+ +  A+   +++  + +            
Sbjct: 458 MAAFSGSVGVIYRQFSITIVSAMWLSVLVAMVLTPALCATMLKPGQHEKTKGLAGWFNRN 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSIC 562
                        +      +      + 
Sbjct: 518 FTKLTNGYLGGVNYLLRHFVLAMGAFVLI 546



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/199 (17%), Positives = 77/199 (38%), Gaps = 8/199 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
           Q     A    L  +++     +      +TE        E++   +  + +  + ML++
Sbjct: 301 QIATEAAVRAQLHELEQFFPPGLKTVYPLDTEPFITLSIGEVVETLLEAIGLVFLVMLVF 360

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     +   L     + + +  T G   L G   N   + A++  +G  V+D +VV + 
Sbjct: 361 LQ---NFRATLIPTIAVPVVLLGTFGLLNLLGYSINTLTMLAMVLAVGLLVDDAIVVVEN 417

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           +     +    +S R+    S++E  G  V   +      LPMA + GSV      F+I 
Sbjct: 418 V--ERVMTEKQLSPREAARVSMDEISGALVGIVLVLSAVFLPMAAFSGSVGVIYRQFSIT 475

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   + ++   ++ +   +
Sbjct: 476 IVSAMWLSVLVAMVLTPAL 494



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 77/231 (33%), Gaps = 10/231 (4%)

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
               +N++    F +  Q   G S  Q         K                        
Sbjct: 811  QKVENYNSFNAFEILGQPAEGYSSGQALATITNILKKLPAGIGYEWTGLSFEQNASGSST 870

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                 + +I+  + +     +   W   L  +  + L +   +    + G+  ++     
Sbjct: 871  GPLYALAMIVILLCLA---ALYESWAIPLAVLLVIPLGVVGAIIATLMRGLANDVYFQVG 927

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +LT +G +V + +++ +  +     +    S  + +  +  E L   + TS+A  + V P
Sbjct: 928  LLTTVGLAVKNAILIVEFAK---MGFEQGKSLEESVLTAARERLRPILMTSIAFVVGVFP 984

Query: 786  MAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +A+  G+   +       +  G+  A   +++   P+   I     K  RI
Sbjct: 985  LAIASGAGSAARVAIGTAVVGGMASATLLAVYFV-PVFFVIVLRLFKVKRI 1034


>gi|113970278|ref|YP_734071.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. MR-4]
 gi|113884962|gb|ABI39014.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. MR-4]
          Length = 1055

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/678 (10%), Positives = 182/678 (26%), Gaps = 46/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++        +  +D++P   P               + +    
Sbjct: 8   RPIFASVISIVIVLLGVIAMF-----KLPVDQYPYITPP-------------QVTISASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
               +    +  +  L   +     +   S +   +    +T++F      +  A  V  
Sbjct: 50  PGASSTTAAESVATPLEQEVNGVPNMIYMSSKSTNSGSTSVTITFDVGTNADLAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q  +  L +D +   +  + +  + ++      +      I  S          +   
Sbjct: 110 SAQQASGGLPIDVQTEGVTVSKDASVELLKLALTSNDERFDEIYLSNYATINIESALKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +   +      +     P  +     TT  +       N        G +   D  
Sbjct: 170 PGVGRTRNTGSRSYAMRIWLKPDAMAGYSLTTTDVINAIKAQNKESPAGTIGTQPNNDDI 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S +                   I                 +    +  
Sbjct: 230 SLTLPISVAGRLSSVQ-------------AFNEIIVRANPDGSIIRLRDIAGVELGSSAY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +            A L           V          
Sbjct: 277 TLQSQLNGENATILQVYLLPGANALEVTHKVKQAMAELSQKFPQGMKWEVFYDASIFIQE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +  L+   ++ +++I TLA +   G T+   S+
Sbjct: 337 SIDEVIHTLIEALVLVVLVVYLFLQNVRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIA 473
             +VL IG+ VD  I+V E +    + K  S   +  +        +  ++       + 
Sbjct: 397 LALVLAIGIVVDDAIVVVENVERLIHEKGMSAIDATRIAMKELSGALVATSLVLCAVFVP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINP 527
              L    G   R FA+ + +++LIS   A+++  A+   +       +      ++   
Sbjct: 457 VSFLAGITGIMYREFAVAITVAVLISTLVALTLSPALCALLLKPSKAPQRGFFHWLNRKL 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A+    A+   +  +I+F      +          + +G   + +    
Sbjct: 517 DLGTNQYVGLVALTNKYAKRSYLAFAIMFGGTYFIMSHLPSSFMPDEDQGRFFIDMTLPD 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++   + L+  +    +              +    +       + +      E   
Sbjct: 577 GSTVNRTEAILKKAEQYVRANPAVAYSFTLAGENRRSGANQANGQFEVVLKPWAEREASH 636

Query: 648 LSTIQNTEIVGPKISREL 665
            +     + +   +   L
Sbjct: 637 ATVQSVMKAIDKDLKNVL 654



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 9/148 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  TL     FG   N  ++ A++  IG  V         + +N++
Sbjct: 363 VRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSLLALVLAIGIVV----DDAIVVVENVE 418

Query: 750 LY--TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFG 804
                  +S  D    ++ E  G  V TS+      +P+  + G + I    FA+ +   
Sbjct: 419 RLIHEKGMSAIDATRIAMKELSGALVATSLVLCAVFVPVSFLAGITGIMYREFAVAITVA 478

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++++   ++ ++  +   +        R
Sbjct: 479 VLISTLVALTLSPALCALLLKPSKAPQR 506



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +    + +        + G++ NL    A + LIG +  + +++ +      
Sbjct: 889  SWSIPVAVLLIAPIALLGAAVTTLISGMQSNLFFQVAFIALIGMAAKNAILIVEFAN--- 945

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L+    +      ++        + TSMA  + VLP+ +    G     S ++P+  G+
Sbjct: 946  QLHQQGRTRISAALEAATMRFRPILMTSMAFILGVLPLVLSEGPGAVSRQSISLPILGGM 1005

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            V+A +  I       +    W  K 
Sbjct: 1006 VLATTIGIVFVPLFFVTTAGWVKKK 1030


>gi|163800320|ref|ZP_02194221.1| putative protein-export membrane protein SecF [Vibrio sp. AND4]
 gi|159175763|gb|EDP60557.1| putative protein-export membrane protein SecF [Vibrio sp. AND4]
          Length = 300

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 140/284 (49%), Gaps = 6/284 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              + R++   +S++ +I ++  L   GLN G+DF GG+   V  +  +    +   L+ 
Sbjct: 8   NIRKIRYFTTAVSVVLTIIALVALGMKGLNLGLDFTGGMVTEVKVDTQLTNQDLLDALQP 67

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 S      E  +++R           +     V   +  I     + +  IVG +
Sbjct: 68  KLGESTSVTRSGEEGRWVIRYSAPVEGHTLPS-----VADVLAPISHQVDVVSNSIVGAQ 122

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           + ++L  +G + ++IS + +L Y+  RF+W  A G++  L  D+   LGFFA+  +EFNL
Sbjct: 123 VGQDLFDQGGLALLISVLTILGYLCFRFEWRLASGSLFALAHDVILVLGFFAMTQMEFNL 182

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T  AA+L ++GYS+ND +++ DR+R+ + +   +     + D++I  T  R++ TS    
Sbjct: 183 TVFAAILAILGYSLNDSIIIADRIRE-LLVARQNWKTEQINDEAILATFSRTMVTSGTTL 241

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           I+V  + + GGS +  F+  M  G++    SSI I   +  ++ 
Sbjct: 242 ITVSALWIMGGSALAGFSTAMFIGVLSGTWSSISIGTMLPEWLK 285


>gi|299139609|ref|ZP_07032783.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598537|gb|EFI54701.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX8]
          Length = 1060

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/579 (13%), Positives = 159/579 (27%), Gaps = 38/579 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   +I   G ++      P   +  +P   P                V    
Sbjct: 8   RRPVFASVCALLIVLAGAVVI-----PGLPISLYPDLAPPQVT---------VSSVYIGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
               V   +    +E  + ++    I   S     + IT++F         A  V   + 
Sbjct: 54  NSQTVEHDVTTPLEESINGVEGMRYITSSSSNDGSSTITITFQTGYDINIAAVDVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L    K   +  T      +  +    D         S  I     D +      
Sbjct: 114 SAQGLLPQAVKNTGVTITKSNPNFVFAAGFYSDNNRYSQDFISNYIDLYVKDPLERISGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP++L     T   +       N        G + +      Q
Sbjct: 174 GAAQIFGVRKYAMRLWLDPTKLAARQLTATDVISALQEQNVEIAAGNVGQQPMSPPQDFQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y V     ++              T +   +I                            
Sbjct: 234 YSVRAVGRLT--------------TPEQFNNIVLKNGPTGIIQLRDVGRAELGAEDYGTN 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              +            +  +              L     P     V          S  
Sbjct: 280 LNFSGATAVGIGVQQLSTANALDVDRKGKAALLELSKSFPPGLHYTVAFDTTTVIGDSIH 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T A    +V+ V+F+ +L  +  ++   +I +++I T A + + G ++   ++ GI
Sbjct: 340 EVVITLAEAIVIVIAVIFLFLLDWRATIIPAITIPVSLIGTFAFIKIFGFSINSLTLFGI 399

Query: 421 VLGIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            L  GL VD  I+V E ++        N  +     +  +  +   S +  +++  +   
Sbjct: 400 TLATGLVVDDAIVVIENVQRHLSEADPNNPDHDPHKATSVAMAEVTSAVIATSLVLISVF 459

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V + FF G      + F++T+  +I IS F A+++  A+    +R ++ K   ++     
Sbjct: 460 VPVSFFPGTTGILYKQFSLTIAFAIAISAFNALTLSPALAALFLRGEEDKYKLLDWTHIE 519

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           FL         +         S         L     + 
Sbjct: 520 FLKRAYRGFVHLVDNSLTTLSSAYGRAIHFILRIRWVMM 558



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 83/251 (33%), Gaps = 10/251 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V  + + +      +              L        D   +  +LE+ K     +   
Sbjct: 266 VGRAELGAEDYGTNLNFSGATAVGIGVQQLSTANALDVDRKGKAALLELSKSFPPGLHYT 325

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                T ++G  I   +I      ++I    + +++     W   +    T+ + +  T 
Sbjct: 326 VAFDTTTVIGDSIHEVVITLA-EAIVIVIAVIFLFLL---DWRATIIPAITIPVSLIGTF 381

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSI 765
            F  +FG   N   +  +    G  V+D +VV +   R                    ++
Sbjct: 382 AFIKIFGFSINSLTLFGITLATGLVVDDAIVVIENVQRHLSEADPNNPDHDPHKATSVAM 441

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     + TS+      +P++ + G+       F++ +AF I ++A +++ ++  +   
Sbjct: 442 AEVTSAVIATSLVLISVFVPVSFFPGTTGILYKQFSLTIAFAIAISAFNALTLSPALAAL 501

Query: 823 IYDWRAKNARI 833
                    ++
Sbjct: 502 FLRGEEDKYKL 512



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 86/252 (34%), Gaps = 15/252 (5%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
              S     L+ L   D S          L R     G +       E +           
Sbjct: 807  TNSGQMVPLDDLVTIDESSGPQTISHYNLFRSAEILGSAAPGKSSSEGLAAMEAVAKKNM 866

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                +         E+   G   VI +   +++Y+ +      +      +  + + +  
Sbjct: 867  LQGMSFEWSGLALEEIESSGKAIVIFALGLLVVYLALSAQYESFALPFIILLAVPMAVLG 926

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTTSISFRDLIDK 763
             L F A  G+  ++     ++ LIG S  + +++    +++R+        +S  +   +
Sbjct: 927  ALSFVAWRGLVDDVYVQIGLVMLIGLSAKNSILIVEFAEQIRE------RGLSIAEAAIQ 980

Query: 764  SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + TS A  + VLP+    G   +   S    +  G++++   ++F    + 
Sbjct: 981  AGELRLRPILMTSSAFILGVLPLVFATGAGKLGRHSVGTAIVGGMILSTVLNLFFIPVLY 1040

Query: 821  LFIYDWRAKNAR 832
            + +  +  + ++
Sbjct: 1041 VLLKSFLERFSK 1052


>gi|332295014|ref|YP_004436937.1| protein-export membrane protein SecF [Thermodesulfobium narugense
           DSM 14796]
 gi|332178117|gb|AEE13806.1| protein-export membrane protein SecF [Thermodesulfobium narugense
           DSM 14796]
          Length = 291

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/296 (27%), Positives = 148/296 (50%), Gaps = 13/296 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           +  +  R W  G+S+L  +  +  L   GL   IDF GG  + +    PV +S++RS LE
Sbjct: 1   MNIIGLRKWFYGLSLLIILPGVVSLILFGLKPSIDFTGGTMIQMRPENPVSISILRSVLE 60

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           S  + D   Q             +            + +   +   +   +    +++GP
Sbjct: 61  SNNLKDTMIQQSGNS--------FIIRTKPLSIEEQKALVSSLESKLGKISFDKIDMIGP 112

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG---- 715
            +S EL+R+ I+ V ++A  +++Y+  R+K  FA+  +  L+ D+    G F++FG    
Sbjct: 113 TVSAELVRQAIILVFVAAFLIIVYLSFRYKPVFAICGVIALLHDVLVITGLFSIFGVLFH 172

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E +   V AVL+ IGYS++D ++++DR+R+NM  +    SF ++ + S  +T+ RS+ T
Sbjct: 173 AEVDSLFVTAVLSTIGYSMHDSIIIFDRIRENM-KFIKKHSFEEIANFSTLQTISRSINT 231

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           S    + +L + ++G  VI  F + +  GI+    SSIF A  +++   ++R K  
Sbjct: 232 SFTVVLVLLSLLIFGSPVIKWFIVALLIGIISGTYSSIFNATALVVDWTNFRKKMK 287


>gi|224369816|ref|YP_002603980.1| preprotein translocase subunit SecF [Desulfobacterium autotrophicum
           HRM2]
 gi|223692533|gb|ACN15816.1| SecF [Desulfobacterium autotrophicum HRM2]
          Length = 344

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/344 (27%), Positives = 153/344 (44%), Gaps = 49/344 (14%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVLANRPV 589
              I + I +     R  G   S      SI  L  H   NYGIDF GG  + V  +   
Sbjct: 1   MQFISNDINLNITGRRRVGFIFSFALIAISIVSLIIHNGPNYGIDFSGGTLVQVKFSDLP 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               +R+ L  + + + S QNF    +    ++        +     +            
Sbjct: 61  STKDIRTGLSQVGLENSSVQNFGEINDNEFLIRTSMPAMTGEGFSQSISDALKASTGMTP 120

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-------------------- 689
            I+  E+VGP++ ++L +K ++ V  S + + IYI  RF+                    
Sbjct: 121 EIRRVEMVGPQVGKDLRKKALLAVFYSLLFITIYISGRFEMKWMLSGVMAGALMTAVYFL 180

Query: 690 ---------------------------WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
                                        +A+GAI  LI D+T T+G F++  +EF+L+ 
Sbjct: 181 SLFSWSNMVVLITAALAVTLVLFWVLELKYAMGAIVALIHDVTITVGLFSILNLEFSLSI 240

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +AA+LT+IGYS+ND ++V+DR+R+N K     +    +I++SINETL R+  TS+   I 
Sbjct: 241 IAALLTIIGYSLNDTIIVFDRIRENTKQL-HKVPLETIINRSINETLSRTTLTSLTTLIV 299

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +  +   GG +I  FA  M  GI++   SSIF+A+PILL     
Sbjct: 300 LFSLYFLGGEIIHDFAFSMIVGIIIGTYSSIFVASPILLAWSKR 343


>gi|167551850|ref|ZP_02345603.1| OqxB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
 gi|205323435|gb|EDZ11274.1| OqxB [Salmonella enterica subsp. enterica serovar Saintpaul str.
           SARA29]
          Length = 1055

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 72/587 (12%), Positives = 168/587 (28%), Gaps = 36/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  ++   G +  L     +  L  +P+  P                      
Sbjct: 10  RPIFAIVLSLLMLLAGAIAFL-----KLPLSEYPAVTPPTVQ---------VSASYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
              +   +    +++ + +         M       I+++F      +    +V   +  
Sbjct: 56  PQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRIVISIAFEQGTDPDMAQIQVQNRVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +VT       +++      Q    ++  S   IRQ  D++       
Sbjct: 116 ALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFAIRQVRDELARLPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP+++     T + +       N        G +    S   Q 
Sbjct: 176 DVLVWGAGEYAMRVWLDPTKIANRGLTASDIVTALREQNVQVAAGSVGQQPEA-SAAFQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    +                 +           
Sbjct: 235 TVNTLGRLTSEE-------------QFGEIVVKIGADGEVTRLRDVARVTLGADAYTLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 282 LLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQRNFPQDIEYRIAYDPTVFVRASLQS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T AL+ L G +L   S+ G+V
Sbjct: 342 VAITLLEALVLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +     + +S   +           I           I +  L 
Sbjct: 402 LSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLA 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLI 534
              G   R FA+T+ +S ++S   ++++  A+   ++R          +     +     
Sbjct: 462 GLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKADWLTRLMGTVTGGF 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  F  A    V         S+ ++  +    G+ + G  Q+
Sbjct: 522 FHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFHQV 568



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 79/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +  G +++       + LS   + +       I   N     +           
Sbjct: 786  PFRMQQEDIGLLKVRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSS 845

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              A   + ++V++ + E +               +  L    I  + +  +A LI     
Sbjct: 846  GQATDAIEKIVRETLPEGMVFEWTDLVYQEKQAGNSAL---AIFALAV-LLAFLILAAQY 901

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      +    + +   +    + G + N+      + L+G +  + +++ +  R  
Sbjct: 902  NSWSLPFAVLLIAPMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR-- 959

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                         + ++    L   + TS A    V+P+ +    G  +  +  I +  G
Sbjct: 960  -AKEHDGADPLTAVLEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAG 1018

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      + +     + +     K 
Sbjct: 1019 MLGVTLFGLLLTPVFYVVVRRMALKR 1044



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     LFG   N  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRASIIPLVAVPVSLVGTFALMHLFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRS--VYTSMA-AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   S  +   K+++E  G    + + +   FI    +A   G     FA+ +A   +
Sbjct: 421 HISQGKSPGEAAKKAMDEVTGPILSITSVLTAVFIPSAFLAGLQGEFYRQFALTIAISTI 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 LSAINSLTLSPALAAILLR 499


>gi|166713193|ref|ZP_02244400.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 1041

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/678 (10%), Positives = 183/678 (26%), Gaps = 43/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P              ++      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVNVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  SR  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDGLAGIEGISTIEAHSRNGSSDISIEFVQSRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARAPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T   +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARSLTVTDVEAALQNENVEVPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLNKGEGGYVVRLGDVARVELSSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +       A   A  ++          V          +    
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVAREARARAIEVQKSLPQGTNIFVAFDTTTFIDAAVERV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LVL+V+++ +   +  L+   ++ + +I +   L     ++ L ++  +VL
Sbjct: 335 YHTLVEAVVLVLVVIWVFLGSARAALIPAVTVPVCLISSFIALYAFDFSINLLTLLALVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E ++      +    +   G  +    +  +    +   + + F  G
Sbjct: 395 CIGLVVDDAIVVVENVQRRIDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLQG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLI 534
                 R  A+ +  ++ IS F A+++   M   +                +   +    
Sbjct: 455 NTGRLFRELAVALAAAVAISAFVALTLTPMMSSKLLRAHGQAKPNRFHQWFDGRMQAVSC 514

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               +++    R W   + +L ++ +   L     +     +      ++ + P      
Sbjct: 515 AYGRSLERHVHRTWVFALLMLLALGTSAWLMGRIPSEVAPAEDRGNFQIMIDGPEGAGFD 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +  +  Q+ +I       +K  +      PG   +   +         +     T   T
Sbjct: 575 YTVGQMHQVENILRPFVGPDKPIVRANPRVPGSFGSSEEMHTGRVSVFLQDWEKRTRPTT 634

Query: 655 EIVGPKISRELIRKGIVG 672
           E+      +  +  G+  
Sbjct: 635 EVADEVQQKLNVLSGVRA 652



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 67/158 (42%), Gaps = 7/158 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 859  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     S    I  S +  L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDEGRSVHAAIVASASVRLRPILMTSIATVVGAIPLVV 975

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             GG       +  + + FG+ ++   S+++       I
Sbjct: 976  AGGPGSASRATIGVVVIFGVSLSTVLSLYVVPAFYSLI 1013



 Score = 41.2 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 3/107 (2%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL    T+ + +  +      F    NL  + A++  IG  V+D +VV + +    + 
Sbjct: 357 RAALIPAVTVPVCLISSFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENV---QRR 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                       +   +     + T+       LP+    G+    F
Sbjct: 414 IDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLQGNTGRLF 460


>gi|260433996|ref|ZP_05787967.1| RND multidrug efflux transporter protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417824|gb|EEX11083.1| RND multidrug efflux transporter protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 1044

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/681 (11%), Positives = 172/681 (25%), Gaps = 33/681 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G +           + +FP   P                      
Sbjct: 9   RPKLAFVISLVLTIMGAI-----GYMVLPVAQFPDITPPVV---------SVSTTYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +   + +        +     +  + ++F      +  +  V   +  
Sbjct: 55  AETVENTVAAPIEAQVNGVDDMIYMTSTSSDNGSYSLNITFEVGTDPDIASVNVQNRVAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +   + +VT       ++L           ++  S        D +   +   
Sbjct: 115 AMSSLPSEVTASGVVTQKASTNMLLLVTLTSPNGTYDSVFLSNYASINLKDALARVQGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    DP ++  L  T   +       N        G   + +    QY
Sbjct: 175 KAEVLTNLEYAMRIWMDPDKMAALSITPGDVIAAIREQNIEVSAGSIGAPPVPEGQTFQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  ++                +    +                 +           
Sbjct: 235 TIKTKGRLT-------------SAAEFGDIVIRAGDAGSIVRVRDIARVELGAQYYAASG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A              +     E        L           V          S + 
Sbjct: 282 FYQAVPATVIGIYQAPGANALAVSERVQAELERLSRAFPTDVEYDVPFNTTDFVEQSLND 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV+ V+F+ +   +  ++   +I +++I T A L L G +L   S+  +V
Sbjct: 342 VVSTLVLTFTLVISVVFVFLGSWRATIIPAVAIPVSLIGTFAFLLLFGMSLNTISLFALV 401

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +  + +  L   V + F 
Sbjct: 402 LAIGIVVDDAIVVVENVERIIAEEGLPPAEATRKAMGQITGPVIATTLVLLAVFVPVTFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIF-IIRYKKMKSIDINPLSRFFLIPD 536
               G     FA+T+  +++IS   A+++  A+    +          +    RF     
Sbjct: 462 PGILGRLYSQFAVTISTAVVISSINALTLSPALCGLVLRARSGPPKGLLAVFERFIGSTR 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +  +R       +S+           T   N    F      G L            
Sbjct: 522 AGYVAIVRKLLIIPVVSLGIIAGFAFGGVTIMSNTSSGFLPLEDNGYLFVDIQLPDAATL 581

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
                    +  Q  +        L          T     V   +           +  
Sbjct: 582 ERTEAVSKRVDDQIREIPGVANTVLINGFSILNGTTTNGAAVFVNLDNWDDRQDEDLSAE 641

Query: 657 VGPKISRELIRKGIVGVIISA 677
              +    +  +     I++ 
Sbjct: 642 AILQKVLAIANREAAASIVAF 662



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 79/219 (36%), Gaps = 9/219 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            + L R               + +     E                  ++L   G+V VI+
Sbjct: 814  HNLFRSATVTAVPAEGLSTGDAIAVMTEESATALPPGYAFEWTGTAQQQLASGGLVVVIL 873

Query: 676  SAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                +  Y+++      W   +  + ++I+ +   +   A+ G + NL     ++ L+G 
Sbjct: 874  GLAILFGYLFLVGQYESWTMPVSILLSVIVALFGAVAAVAIVGSDINLYTQIGMIMLVGL 933

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            +  + +++ +   +        +S ++   ++ ++     + T+++  + V+P+    G+
Sbjct: 934  ASKNGILIVEFAMEQRA---KGMSIKEAAAEAAHQRFRAVMMTALSFLLGVVPLLAANGA 990

Query: 793  VI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                  +  + +  G++ A    + +   +   +   R 
Sbjct: 991  GAASQKAIGVAVFGGMLAATLVGVIVVPVLYAVMQGLRE 1029



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 91/240 (37%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V +  +       Q    S          +   Q    +++A +  ++   ++++
Sbjct: 257 DAGSIVRVRDIARVELGAQYYAASGFYQAVPATVIGIYQAPGANALAVSERVQAELERLS 316

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLIL 702
              P     +          + +   +  ++++   ++ +       W   +     + +
Sbjct: 317 RAFPTDVEYDVPFNTTDFVEQSLNDVVSTLVLTFTLVISVVFVFLGSWRATIIPAVAIPV 376

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T  F  LFG+  N  ++ A++  IG  V+D +VV + +     +    +   +   
Sbjct: 377 SLIGTFAFLLLFGMSLNTISLFALVLAIGIVVDDAIVVVENV--ERIIAEEGLPPAEATR 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
           K++ +  G  + T++      +P+    G +      FA+ ++  +V+++ +++ ++  +
Sbjct: 435 KAMGQITGPVIATTLVLLAVFVPVTFMPGILGRLYSQFAVTISTAVVISSINALTLSPAL 494


>gi|187927937|ref|YP_001898424.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter [Ralstonia
           pickettii 12J]
 gi|187724827|gb|ACD25992.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ralstonia pickettii 12J]
          Length = 1051

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/690 (10%), Positives = 186/690 (26%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L      LP+  + ++P+  P              ++ +  + 
Sbjct: 8   RPVFAWVIALAIILAGVLA-----LPKLPVAQYPNIAPP-------------NVSISANY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          I LSF      +  A +V  
Sbjct: 50  PGASARTVESAVTAIIEREMNGAPGLLYMSSSSDAAGNVSINLSFTQGTSPDLAAVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L    ++N +      E  ++      ++     I+         I Q+   
Sbjct: 110 RLKIVEERLPEVVRRNGIRIEKAAENYMMYLSLTAERGRFDGIDLGDLASSDLIPQLRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    D  +L  L  T   +S      N        G   +  + 
Sbjct: 170 PGVGTAQLFDA-EYAMRIWPDADKLTALGLTAGDLSDAVRRYNARITVGEIGSGAVPGNA 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V     ++                             R         +    +  
Sbjct: 229 PINASVTGDDGLT-------------TPDAFGQIPLRAGAQGRMVLLRDVARVELGGSDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    +                +     +    +    +A   P     V   +      
Sbjct: 276 LYLSRMNGKPATTIGIKLAPGANAVGVAKRVRAVLDEAQAHFPPGVRYEVAYDSSRFVGI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +V+ + +   +  L+    + + ++ T A++  +G ++ + ++
Sbjct: 336 AIEQVVKTLLEAVVLVFLVMMLFMQNPRATLIPTLVVPIALLGTFAVMLPMGFSINVLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +     +   S   +      +    I   ++      V 
Sbjct: 396 FGLVLAIGILVDDAIVVVENVERVMHEEVLSPREATAKAMRQISGAIVGISLVLTAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + FFG   G   R F++++ +S++ S F A+++  A+   +           R     + 
Sbjct: 456 MAFFGGAVGNIYRQFSLSLAVSMVFSAFLALTLTPALCATLLKPVQAGHGVERKGFFGAF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +             +A    R     V    +  +  +            +  G      
Sbjct: 516 NRGFARLTARYQGGVARLLNRTGRALVAYGAVIGVVVLLFTQLPTAFLPEEDTGEFMTVA 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +       +     +   +   ++ +         +      G+      +   +K    
Sbjct: 576 MLPTGATQAQTLDVVRQAEQHFMTQEPAVAST-LAITGFSLYGNGQNAAMLFLTLKDWKE 634

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                  +            ++    ++ +
Sbjct: 635 RKGGDQHVDAVVARANAAFGKIKGAMVMAM 664



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 79/196 (40%), Gaps = 8/196 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            VL+  +      V      ++         ++++  +  V++  + M++++        
Sbjct: 308 AVLDEAQAHFPPGVRYEVAYDSSRFVGIAIEQVVKTLLEAVVLVFLVMMLFMQ---NPRA 364

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  T       G   N+  +  ++  IG  V+D +VV + +     ++ 
Sbjct: 365 TLIPTLVVPIALLGTFAVMLPMGFSINVLTLFGLVLAIGILVDDAIVVVENV--ERVMHE 422

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +S R+   K++ +  G  V  S+      +PMA +GG+V      F++ +A  +V +A
Sbjct: 423 EVLSPREATAKAMRQISGAIVGISLVLTAVFVPMAFFGGAVGNIYRQFSLSLAVSMVFSA 482

Query: 810 SSSIFIAAPILLFIYD 825
             ++ +   +   +  
Sbjct: 483 FLALTLTPALCATLLK 498



 Score = 45.1 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 67/225 (29%), Gaps = 8/225 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + +     L +             ++          G         E +    +    L 
Sbjct: 790  NAAGAMVPLSAFTTTKWIVGPLKLDRYNGFPAMTITGSPAPGHSSGEAMAAMESIARGLP 849

Query: 650  TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                 E  G      L       +  +S + + + +   ++ W   L  +  + L +   
Sbjct: 850  EGFGYEWTGQSFEERLSGAQAPALFALSILVVFLCLAALYESWSIPLAVMLVVPLGVLGA 909

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    L  +  ++     ++  IG S  + +++ +  +    L    +   +   ++   
Sbjct: 910  LLGATLRFLPNDIYFKVGLIATIGLSAKNAILIIEVAKD---LVAQGMGLIEATLEAARL 966

Query: 768  TLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAA 809
                 V TS+A    V+P+   +    +   +    +  GI+ A 
Sbjct: 967  RFRPIVMTSLAFAFGVVPLAIASGAASASQRAIGTGVLGGIIAAT 1011


>gi|47027985|gb|AAT09012.1| CmeB [Campylobacter coli]
          Length = 1040

 Score =  172 bits (436), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 184/683 (26%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLTNLPIEQYPSLTPPTV---------KVSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSATLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAINDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QSPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T +        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  + +          F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 537 CIAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    +M  R     +     + +I  L+    N  +  +    + +        S
Sbjct: 522 TSIFSAGVAYMLKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEEDQGLM-ISIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
                  K          V + +
Sbjct: 641 QIIAELNKKFAFDRNASSVFIGL 663



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 91/244 (37%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++   +++E   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 62/538 (11%), Positives = 142/538 (26%), Gaps = 39/538 (7%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M       +L   I    +           + +     M        ++L   S L   +
Sbjct: 532  MLKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEEDQGLMISI-----INLPSASALHRTI 586

Query: 61   DEDDFVNGFL--QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
             E D ++  +       +  + +    +   S+++    + +   D + +   AD++   
Sbjct: 587  SEVDHISQEVLKTNGVKDAMAMI-GFDLFTSSLKENAAAMFIGLQDWKDRNVSADQIIAE 645

Query: 119  LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            L    +         + +            +  +      + +Q  E + + +      E
Sbjct: 646  LNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNKSGKSYDQIQEDVNKLVAAANQRE 705

Query: 179  STIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                   +      Q     D  +L+        +                         
Sbjct: 706  ELYGVRTTLDTSFPQYKLIIDRDKLKHFNLNMQDVFSTMNATIG---------------- 749

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               Y V D   +         A  D +  +  +   F      +   +      +  +  
Sbjct: 750  --TYYVNDFTMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSFLTLQRSSGP 807

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             D +        Q         +    IE    +A         I  +    + V +   
Sbjct: 808  DDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSGSAYQEVSSKGT 867

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
            +        A   G++ + L +   Y      L    ++   V  +  L+ L G +  + 
Sbjct: 868  ASY------AFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLRGFSNDIY 921

Query: 416  SIAGIVLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIA 473
               G++L IGL+  + IL+ E   EE  K        ++     R    I  S       
Sbjct: 922  FQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIMTSLAFTFGV 981

Query: 474  TVVLFFFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
              ++F  G G+         +   ++ +   AI  V      +  + +        + 
Sbjct: 982  LPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEWLDKKRGKVH 1039


>gi|166711673|ref|ZP_02242880.1| preprotein translocase subunit SecF [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 322

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/276 (30%), Positives = 151/276 (54%), Gaps = 5/276 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIP+   I FMR R   + + ++ ++ S+ ++   G NY ++F GG  +     + VD+
Sbjct: 7   HLIPNDTKIDFMRLRKPVLILMLVLAVASVGIIVGKGFNYALEFTGGTLVQTSFQKTVDV 66

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR---VLEMVKKKITEIVPL 648
             VR  L      +   QN  G  + ++RLQ     +        V E V+K +T     
Sbjct: 67  DQVREKLSKAGFENAQVQNARGGNDVMIRLQPHGQSNNRDDAARTVAEEVRKAVTSDENP 126

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           +T+Q  E VGP++ ++L   G+   +   +  LIYI  RF+W FA+ A  T + D+  T+
Sbjct: 127 ATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALFDLLVTV 186

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   +++++SIN+T
Sbjct: 187 AFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRAL--RVEPLEVLNRSINQT 244

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           L R+V T++  F+S L + ++GG  +   A     G
Sbjct: 245 LSRTVITAVMFFLSALALYIYGGESMEGLAETHMIG 280


>gi|149187513|ref|ZP_01865810.1| preprotein translocase subunit SecF [Vibrio shilonii AK1]
 gi|148838393|gb|EDL55333.1| preprotein translocase subunit SecF [Vibrio shilonii AK1]
          Length = 300

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/291 (28%), Positives = 145/291 (49%), Gaps = 6/291 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           + +         R++   +SI   + SI  +   GLN+G+DF GG+   V        + 
Sbjct: 1   MKNFFKTNIRSIRYFTNVLSIALVVISIIAVGMRGLNFGLDFTGGVVSEVQLASNTSQNE 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           ++  LE +    I+      E  + +R                  K+ + +  P STI +
Sbjct: 61  LKQTLEPVLGDGITVTQSGEEGRWTIRYAA-----DQGAAKHNEFKETLLKAYPGSTIVS 115

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
             IVG ++ ++L  +G + +++  + +L Y+  RF+W  A GA+  L+ D+   LGFFAL
Sbjct: 116 DSIVGAQVGQDLYDQGGLALLVCLLCILGYLSFRFEWRLASGALAALLHDVILVLGFFAL 175

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             +EFNLT  AA+L ++GYS+ND +++ DR+R+ +KL     +  D+ D+++  T  R++
Sbjct: 176 TQMEFNLTVFAAILAILGYSLNDSIIIADRIREILKLRPNEQT-ADVSDQAVIATFARTM 234

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            TS    I+V  + + GG  +  FA  M  GI     SSI +   I  +++
Sbjct: 235 VTSGTTLITVAALWLLGGDALQGFATAMFIGIFSGTWSSISMGTVIPEWLH 285


>gi|309779684|ref|ZP_07674443.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ralstonia sp. 5_7_47FAA]
 gi|308921625|gb|EFP67263.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ralstonia sp. 5_7_47FAA]
          Length = 1031

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/612 (11%), Positives = 183/612 (29%), Gaps = 43/612 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ +I   GL+           +  FP                     L   
Sbjct: 9   RKPIPSILLFILITVAGLVS-----FKMLSIQNFPDIDFPAV---------SVTASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    +   + F   +  +   + V   +  
Sbjct: 55  TPTQMETEVTRKIEDSIASIGAIKHITSTINDGSSTTMVEFQLEKDVQEAVNDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  D ++ ++   T   + ++            A + S  +      ++       
Sbjct: 115 IRAQLPSDVQEPVISRVTFASMPVLTYAVESTD--MDAEDLSWFVDNTVNKRLLSVHGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++  + DP RL+ L  + A +S           G    +     +     
Sbjct: 173 KVTRQGGVDREVRVQLDPVRLQALNVSAADISAQVRGMQQEAPGGRGNIGGQEQAVRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   E+                      +       RR       ++    A      
Sbjct: 233 TVKSAREL--------------------AQMDIPLSDGRRIRLADVADVRDTAAEPRQMA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +           S     +      A L+A    + +       V     + + 
Sbjct: 273 LFDGKPVVSFQVFRSRGASEISVAKGVREALAALQAERPNVHVTE-VYNMVKPVSDAYTA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+++ +   +   V+  ++ L++I T A + LL  TL   ++  + 
Sbjct: 332 SMHALYEGAILAVIVVWLFLRDWRATFVSAVALPLSIIPTFAAMQLLDFTLNGITLLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  +    +           +  +++T +   +   F G
Sbjct: 392 LVVGILVDDAIVEVENIVRHLRNGKKPLEAAMEAAQEIGLAVVATSLTLVAVFLPTAFMG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F  T  L++L S+  A  +   M  ++++ +   + D   ++R+       
Sbjct: 452 GISGKFFKQFGWTASLAVLASLLVARLLTPMMAAYMLKPQDEPNRDGWVMTRYLQAARWC 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                +           F +    +          +    +Q+ V +     ++  R N 
Sbjct: 512 LEHPWKTGGMAA---AFFVVSVAIIGLIPATFLPPEDWAQLQMTVESPPGSTIAQTRDNT 568

Query: 599 ESLQIGDISFQN 610
           E ++   +  + 
Sbjct: 569 ERVRKIVMQHKE 580



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/258 (11%), Positives = 77/258 (29%), Gaps = 6/258 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + + +   R + L+ V    ++                     + +    ++  + +  
Sbjct: 242 QMDIPLSDGRRIRLADVADVRDTAAEPRQMALFDGKPVVSFQVFRSRGASEISVAKGVRE 301

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
               +    P   +     +   +S             + +A+++       W     + 
Sbjct: 302 ALAALQAERPNVHVTEVYNMVKPVSDAYTASMHALYEGAILAVIVVWLFLRDWRATFVSA 361

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             L L I  T     L     N   + A+  ++G  V+D +V  + +   ++        
Sbjct: 362 VALPLSIIPTFAAMQLLDFTLNGITLLALTLVVGILVDDAIVEVENI---VRHLRNGKKP 418

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIF 814
            +   ++  E     V TS+      LP A  GG        F    +  ++ +   +  
Sbjct: 419 LEAAMEAAQEIGLAVVATSLTLVAVFLPTAFMGGISGKFFKQFGWTASLAVLASLLVARL 478

Query: 815 IAAPILLFIYDWRAKNAR 832
           +   +  ++   + +  R
Sbjct: 479 LTPMMAAYMLKPQDEPNR 496



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 60/146 (41%), Gaps = 4/146 (2%)

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL 720
            +EL     + +    + +   + + F  +   +  +  L L +    G  ALFG   +L
Sbjct: 838 MQELFSSFFLAMFAGVLCVYAVLVLLFHDFTQPVTILAALPLSVGGAFGLLALFGFSLSL 897

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            A+  +L L+G    + +++ +     +      +S  + I  + ++     V T++A  
Sbjct: 898 PALIGLLMLMGIVTKNSILLVE--YAIVARRDLGMSRTEAIIDACHKRARPIVMTTVAMT 955

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIV 806
             ++PMA  G      F  PMA  ++
Sbjct: 956 AGMVPMA-LGLEGDTGFRAPMAVAVI 980


>gi|1408202|gb|AAC45560.1| RND protein [Neisseria gonorrhoeae]
          Length = 1067

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/672 (10%), Positives = 183/672 (27%), Gaps = 40/672 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H +     
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HAIYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              + G +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEGSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLRTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNVVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNIYLKDVAKVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A+L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  ++
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMI 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +F        G        +  ++  +     +     ++L        D   V  +
Sbjct: 513 FNKKFDSWTHGYEGRVAKVLRKTFRMMVVYIGLAVVGVFLFMRLPTSFLPTEDQGFVMVS 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           ++          +    +   +       +++                +  +  ++    
Sbjct: 573 VQLPAGATKERTDATLAQVTQLAKSIPEIENIITVSGFSFSGSGQNMAMGFAIFKDWNER 632

Query: 658 GPKISRELIRKG 669
               S  +   G
Sbjct: 633 TASGSDAVAVAG 644



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 100/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +E V+K + E+    + +       +       + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMEAVQKMVDELGGGYSFEWGGQSSEEAKGG--SQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ +  G+      +    + +G++V    S+F+     + +  +  + A
Sbjct: 994  VPLYIAAGASSASQRAIGTTVFWGMLVGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 95/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNIYLKDVAKVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMILVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+   +   FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|300776992|ref|ZP_07086850.1| HAE1 efflux family protein [Chryseobacterium gleum ATCC 35910]
 gi|300502502|gb|EFK33642.1| HAE1 efflux family protein [Chryseobacterium gleum ATCC 35910]
          Length = 1053

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/528 (12%), Positives = 153/528 (28%), Gaps = 40/528 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I  +G +      + Q   ++FP   P             + + + +  
Sbjct: 8   RPVFAIVISVVILFMGGIA-----MKQLPTEQFPKIAP-------------TTVAVSIAY 49

Query: 63  DDFVNG-FLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117
                   ++     + + +    G+   +       +  + + F            V  
Sbjct: 50  PGASADVLVKSSLITIENAINGVQGMRYITTDATSAGEATVNVVFDPGTDPNEAVVLVKT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V   L    +K  +V    +   ++                    +   I +I   
Sbjct: 110 RVDQVMPLLPELVQKEGVVVNPIQPSMLMYVNLYSTNKSMDEKFLYNYSMVNIIPEINRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P R+R    +  ++       +   +    G      + 
Sbjct: 170 HGIAKSQILGSRRYAMRIWLNPDRMRAYDISVDEVMKAIGEQSIIGRPGRIGQSSGIAAQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y++                    K  +    I                 +       
Sbjct: 230 SLEYVLT-------------YKGQYNKPEEYENIIVRSNAEGENVKLKDIAKVELGSEFF 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        +       + N  I       A ++    P     +          
Sbjct: 277 DIYSNLDGHPSASIVLKQNYGSNANDVIRDVKAKLAEMKGNFPPGVDYKISYDVSQFLDA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  L+   ++ +++I T  ++   G T+ L ++
Sbjct: 337 SIEQVMHTLRDAFILVAIVVFIFLGDWRSTLIPIIAVPVSLIGTFFVIQFFGLTINLVTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD+ I+V E +  +    N S + ++          I       +   + 
Sbjct: 397 FALVLAIGIVVDNAIVVIEAVHAKMEDSNISPYKAVKEVMGEIAGAIIAITAVMVAVFIP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           + F  G      R F+ITM  SI+IS   A+++   +   +++    K
Sbjct: 457 ISFMTGPVGTFYRQFSITMASSIVISAVVALTLTPVLAAMLLKNHHGK 504



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 104/285 (36%), Gaps = 10/285 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                              +    + V +N   +   ++   +     +      + + +
Sbjct: 226 IAAQSLEYVLTYKGQYNKPEEYENIIVRSNAEGENVKLKDIAKVELGSEFFDIYSNLDGH 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGV 673
               +  +         V+  VK K+ E+           +   +S+ L   I + +  +
Sbjct: 286 PSASIVLKQNYGSNANDVIRDVKAKLAEMKGNFPPGVDYKISYDVSQFLDASIEQVMHTL 345

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + I + I ++I    W   L  I  + + +  T      FG+  NL  + A++  IG 
Sbjct: 346 RDAFILVAIVVFIFLGDWRSTLIPIIAVPVSLIGTFFVIQFFGLTINLVTLFALVLAIGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V++ +VV + +    K+  ++IS    + + + E  G  +  +       +P++   G 
Sbjct: 406 VVDNAIVVIEAVH--AKMEDSNISPYKAVKEVMGEIAGAIIAITAVMVAVFIPISFMTGP 463

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
           V      F+I MA  IV++A  ++ +   +  + + +   K  ++
Sbjct: 464 VGTFYRQFSITMASSIVISAVVALTLTPVLAAMLLKNHHGKPKKV 508



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 47/146 (32%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + +L + +  +       G+E ++ A   ++ +IG    + V++ +     +
Sbjct: 893  SFLIPFAVLCSLPVGVFGSFLLLKAMGLENDIYAQVGLIMIIGLLGKNAVLIVEFA---V 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGI 805
            K      S  +   +         + TS A    ++P+    G   I   +       G+
Sbjct: 950  KRRQAGDSILEAAVEGSKARFRPILMTSFAFIAGLVPLVFARGAGAIGNHTIGASSLGGM 1009

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            ++     + +   +      W     
Sbjct: 1010 LIGTLFGVIVIPGLYYIFAKWSDGKK 1035


>gi|149277406|ref|ZP_01883547.1| Hydrophobe/amphiphile efflux-1 HAE1 [Pedobacter sp. BAL39]
 gi|149231639|gb|EDM37017.1| Hydrophobe/amphiphile efflux-1 HAE1 [Pedobacter sp. BAL39]
          Length = 1055

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 61/522 (11%), Positives = 146/522 (27%), Gaps = 41/522 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I  +G+L      +    + +FPS  P               + +  + 
Sbjct: 8   RPVLSIVISLIIVFLGVLA-----MTHLPVTQFPSISPPK-------------VNITAEY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +     L   +    G+   +     +    I + F         +  +  
Sbjct: 50  PGANGELMIKSVIIPLERAINGVPGMKYMASDAGNDGEATIQVVFNLGTDPNQASVNIQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V +KL     +  +  T E+   ++                        + ++   
Sbjct: 110 RVASVVNKLPPLVVREGVKITREESNMLMYINLYSKDPKMDQKFLFNFADINVLSELKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P R+     +  ++       +        G    + S 
Sbjct: 170 DGVGVADILGNREYAMRIWLKPDRMLAYKISADEVLEALNQQSLEASPGKTGESSGKRSQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y+++     +                     I                N+    ++ 
Sbjct: 230 SFEYVLKYPGRFT-------------TKEGYQNIILRSSANGEILRLKDVANVEFGSSMY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG-SLPIKLNIVEERNVGADL 356
                L                + +  I+        ++           +         
Sbjct: 277 DIYSNLNGHASAAITVKQSYGSNASQVIKDIKTKMEEIKKTSFPKGVDYEISYDVSKFLN 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+F+ +   +  L+   ++ +++I T   +   G TL L +
Sbjct: 337 ASIEKVIHTLVEAFILVGLVVFLFLGDWRSTLIPAIAVPVSLIGTFVFMQFFGITLNLIT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +  +  +   S F +           I           +
Sbjct: 397 LFALVLAIGVVVDDAIVVIEAVHAKMHEEHLSAFKATKKAMHEISGAIIAITFLMAAVFI 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + F  G      R F+ITM  +I++S   A+++  A+   +
Sbjct: 457 PVAFMSGPVGIFYRQFSITMATAIILSGVVALTLTPALCAMM 498



 Score = 65.9 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/236 (18%), Positives = 85/236 (36%), Gaps = 6/236 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V      S      S  N        V+  Y    S     +   +++      P    
Sbjct: 265 DVANVEFGSSMYDIYSNLNGHASAAITVKQSYGSNASQVIKDIKTKMEEIKKTSFPKGVD 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
                   K     I K I  ++ + I + + +++    W   L     + + +  T  F
Sbjct: 325 YEISYDVSKFLNASIEKVIHTLVEAFILVGLVVFLFLGDWRSTLIPAIAVPVSLIGTFVF 384

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              FGI  NL  + A++  IG  V+D +VV + +    K++   +S      K+++E  G
Sbjct: 385 MQFFGITLNLITLFALVLAIGVVVDDAIVVIEAVH--AKMHEEHLSAFKATKKAMHEISG 442

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +  +       +P+A   G V      F+I MA  I+++   ++ +   +   +
Sbjct: 443 AIIAITFLMAAVFIPVAFMSGPVGIFYRQFSITMATAIILSGVVALTLTPALCAMM 498



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 57/165 (34%), Gaps = 7/165 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             I   +I    + + +  +++ +   L  I +L   I        L G+E N+ A  +++
Sbjct: 874  AIYIFLICLGFVYLILAAQYESFVLPLAVILSLPAGIFGAFLVLKLCGLENNIYAQVSLV 933

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM- 786
             LIG    + V++ +     ++ +    S      +         + TS A    ++P+ 
Sbjct: 934  MLIGLLGKNAVLIVEFA---VQKHRMGASVLSAALEGAAVRFRPILMTSFAFIAGLIPLA 990

Query: 787  AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G   I   +     A G++      + I   +         K
Sbjct: 991  FASGPGAIGNRTIGSAAAGGMLFGTVFGVLIIPGLYYIFGKIAEK 1035


>gi|113955253|ref|YP_730794.1| preprotein translocase subunit SecD [Synechococcus sp. CC9311]
 gi|113882604|gb|ABI47562.1| protein-export membrane protein SecD [Synechococcus sp. CC9311]
          Length = 494

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 129/498 (25%), Positives = 220/498 (44%), Gaps = 50/498 (10%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFV----NGFLQMYSDELRSFLKKEGIGVFSMR 92
           S +    + LGLDLRGGS L LEV     +       L+     L   +   G+   +++
Sbjct: 20  SVLTSFPLQLGLDLRGGSQLTLEVQPSGEITKVKAEQLEAVKAVLDRRVNGLGVAESTLQ 79

Query: 93  Q-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
               N++ L           A  +               ++ L      +     +   N
Sbjct: 80  TVGDNQLVLQLPGVTDPSRAARVLGSTALLEFRAQKPGSEQELRGLIQLRAQLRSVLALN 139

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
             +  S  ++Q     R+++ +                                L  TA 
Sbjct: 140 ASKDASDPVDQEDGPTREQLAKAQKELG--------------------------LEGTAD 173

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
               ++    ++       RF                ++G  L  A            V 
Sbjct: 174 SEQEQLEQLLARANEEIVDRFEP------------AALTGKDLVTAGRQQQQNGSSWEVT 221

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI-------NQAIPSGKAQISGNFT 324
           ++F+  G  +F E+TR   G    + +                    I  G A I+GNF+
Sbjct: 222 LTFNREGGDKFAELTRSIAGTGRLLGIVLDGRPISEAGVGEQFKAAGITGGSAVITGNFS 281

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  L   LR GSLP+ + I+E R +G  LG++++ +   A +AGLVL+ +FM+++Y 
Sbjct: 282 AEEARDLEVQLRGGSLPLPVEILEVRTIGPSLGAENVRRSLIAALAGLVLVAIFMLLVYR 341

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             G VA  ++ L  +  +A  +L+  TLTLP  AG +L IG+AVD+N+L+ ERI++E R+
Sbjct: 342 LAGAVAVLALSLYALFNMAAYALIPVTLTLPGTAGFILSIGMAVDANVLIFERIKDELRR 401

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
             ++  S++ GFS+A+S+I D +IT LI+   LFF G G V+GFA T+G+ +L+S+FTA+
Sbjct: 402 GNTLIRSIETGFSQAFSSIVDGHITTLISCAALFFLGTGLVKGFAATLGIGVLLSLFTAL 461

Query: 505 SIVRAMMIFIIRYKKMKS 522
           +  R ++ F++ Y+ ++ 
Sbjct: 462 TCTRTLLRFLMSYQSLRR 479



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 77/176 (43%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E +R+ ++  +   + + I++ + ++      A+  L L     +  +AL  
Sbjct: 308 TIGPSLGAENVRRSLIAALAGLVLVAIFMLLVYRL-AGAVAVLALSLYALFNMAAYALIP 366

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L   A  +  IG +V+  V++++R++  ++      +    I+   ++     V  
Sbjct: 367 VTLTLPGTAGFILSIGMAVDANVLIFERIKDELR---RGNTLIRSIETGFSQAFSSIVDG 423

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS   +   G  ++  FA  +  G++++  +++     +L F+  +++   
Sbjct: 424 HITTLISCAALFFLGTGLVKGFAATLGIGVLLSLFTALTCTRTLLRFLMSYQSLRR 479


>gi|302343869|ref|YP_003808398.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfarculus baarsii DSM 2075]
 gi|301640482|gb|ADK85804.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfarculus baarsii DSM 2075]
          Length = 1042

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/688 (11%), Positives = 194/688 (28%), Gaps = 44/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+      L    + ++P+  P               + ++ + 
Sbjct: 9   RPIFAAVVSIVIVLGGLIT-----LSTLPIAQYPNIEPPT-------------VTVKANY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +    +  +   +   EG+   S     +    +T++F      +  +  V  
Sbjct: 51  PGANAKVVADTVAAPIEQQVNGVEGMIYMSSVSASDGSYSLTVTFETGVDLDMASVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L  D K+  + T  +      +     +      I           D++   
Sbjct: 111 RVAIATNSLPEDVKRLGVTTMKQSTNFAAMITLVSEDGRYDDIYLCNYATINVRDELSRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P ++R L  T A +       N      + G        
Sbjct: 171 YGAGSVNVIGAGDYSMRLWLNPEKMRYLGLTAADVVNAVSAQNVQVAAGIVGQPPAPKDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY V     +                 +    +       R         +       
Sbjct: 231 AFQYTVTVLGRL-------------EDVGQFENIVVKTGADGRLVRVRDVGRVELGSVSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G           +       +     +        L           +          
Sbjct: 278 TTGSQRDGKPAALIMVYQLPGSNLLDLTDNISAKMEELSKRFPESINYQITYNAADVVHA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I A LV++ +++ +   +  L+   +I +++I T  ++++LG ++   ++
Sbjct: 338 SIDEIVETLVIAAILVILTVYVFLQDLRATLIPAITIPVSLIGTFLVMAILGFSINTLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERI-REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E + R  +    +   +           +  +    L   V 
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVARNIDETGLAPKEATIKAMQEVTGPVIATTAVLLAVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             F GG      + FA+T+  +   S   A+++  A+   ++R                +
Sbjct: 458 TAFMGGMTGILYKQFALTIATATFFSSINALTLSPALCALVLRPTPEHHRGFFAWFNTVM 517

Query: 534 IPDCIAIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                          +  G+ + +   I  +          G   +      ++  +  D
Sbjct: 518 QKATGGYLSTVSLSIKRMGLAMVVFLIIGGLAFFGIVRTPTGFVPEEDQGYLMVNVQLPD 577

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +   +  ++  +       G  +F+    Y   D  A + V  +V          + 
Sbjct: 578 AASLERTVAVMERLNKIIAATPGVDHFITVRGYSFLDGAANSNVGGIVVVFKPWDERTTP 637

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAI 678
             +   +   + R+   +    +I + +
Sbjct: 638 ETDQYAILTHLQRQ-FSQVQEAIIFAFL 664



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 19/200 (9%), Positives = 69/200 (34%), Gaps = 6/200 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
             +  K+ +    S +                + +    I+ + + +++  +++ W     
Sbjct: 838  ELMTKMADAKLPSQMGFQWSGMSYQEVATGSQAVFIFGIAVVFVYLFLAAQYESWKIPFS 897

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             I  + L +          G++ N+     ++ LIG +  + +++ +  ++        +
Sbjct: 898  VILAVPLALFGAFAAIMARGLDNNVYTQIGLVLLIGLATKNAILIVEFAKE--AHEQRGL 955

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
               +   ++        + T+ A  + V+P+ +    G     +    +  G++ A    
Sbjct: 956  GPMEAAIEAARLRFRPILMTAFAFILGVVPLLIASGAGAGSRRALGTAVFGGMLAATILG 1015

Query: 813  IFIAAPILLFIYDWRAKNAR 832
            +     + + I +   +  +
Sbjct: 1016 VVFVPTLFVAIENLAQRLGK 1035



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 91/235 (38%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V              Q        ++  Q    + +  T  +    +++++  P 
Sbjct: 262 VRVRDVGRVELGSVSYTTGSQRDGKPAALIMVYQLPGSNLLDLTDNISAKMEELSKRFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
           S           +    I + +  ++I+AI +++ +++        L    T+ + +  T
Sbjct: 322 SINYQITYNAADVVHASIDEIVETLVIAAILVILTVYVFLQDLRATLIPAITIPVSLIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A+ G   N   +  ++  IG  V+D +VV + + +N+    T ++ ++   K++ E
Sbjct: 382 FLVMAILGFSINTLTLFGLVLAIGIVVDDAIVVVENVARNIDE--TGLAPKEATIKAMQE 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + T+       +P A  GG        FA+ +A     ++ +++ ++  +
Sbjct: 440 VTGPVIATTAVLLAVFVPTAFMGGMTGILYKQFALTIATATFFSSINALTLSPAL 494


>gi|330950380|gb|EGH50640.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae Cit 7]
          Length = 1048

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/519 (12%), Positives = 151/519 (29%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTVK---------ISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I+L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASISLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+++ +     + +S      N        G     +      
Sbjct: 174 DVQTLGSG-YAMRIWLDPAKMEKYSLMPSDISSALEAQNTEVSAGQLGALPAVEGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL--PIKLNIVEERNVGADLGSD 359
            L             +  +     E        L            ++          S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPAQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIALVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     +   S   +         S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMGEEHLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSLTIVSAMLLSVLVAMTLTPALCATM 498



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 93/254 (36%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  +   +++ +++  +
Sbjct: 303 GEAIKAKLKELEPFYPAQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIALVVLIMFLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 421 VMGEEHLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSLTIVSAM 480

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 481 LLSVLVAMTLTPAL 494



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 77/252 (30%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +        S   G    + ++G  +  V     PG S            K 
Sbjct: 789  VRNSNDEMVPFSSFASSSWSYGSPLLERYNGSSSLEVVGDPAPGVSSGTAMDAVEAIIKQ 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + V+   + +     +   W      +  + L
Sbjct: 849  LPEGIGYEWTGQSYQLRLSGSQAPMLYAISVLFVFLCLA---ALYESWSVPFSVMLVVPL 905

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    + G+  ++     +LT +G +  + +++ +  +    L     S  +   
Sbjct: 906  GVVGAVLATRISGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK---HLQEQGKSLHEATL 962

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPI 819
             +  + L   + TS+A    VLP+A+  G+           +  G+  A    IF+    
Sbjct: 963  LAARQRLRPILMTSLAFMFGVLPLALSSGAGSAGRNAIGTGVLGGMFSATVLGIFLVPLF 1022

Query: 820  LLFIYDWRAKNA 831
             + +    ++++
Sbjct: 1023 FVEVRRRFSRSS 1034


>gi|198274244|ref|ZP_03206776.1| hypothetical protein BACPLE_00384 [Bacteroides plebeius DSM 17135]
 gi|198272919|gb|EDY97188.1| hypothetical protein BACPLE_00384 [Bacteroides plebeius DSM 17135]
          Length = 1046

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/555 (12%), Positives = 167/555 (30%), Gaps = 33/555 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I C+G L  +        + +FP  +P +                   
Sbjct: 7   RRPILSAVISVIIVCLGGLALM-----SLPITQFPDIVPPSVT---------VTTRYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D +   +    +   + +                +T + F      +  A  V   + 
Sbjct: 53  SADVMAKTVATPLERAINGVPGMTYMTTVCTNDGMSLTTVYFKVGTDPDVAAVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  +VT  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVVTEKEVNSMLMYLNVFSTDTTHTEKFVYNFADINVLRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P+R+         ++      N        G+   +     Q
Sbjct: 173 GLVEIMGSRDYAMRVWLNPARMAAYNLVPQDVTDAIRRQNIEAAPGKTGISSDKLPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++                      +    +                 I          
Sbjct: 233 YVLQ-------------YTGKFSTPEEYGEIVLKALPDGSLLRLRDVATIEFDSEDYNMV 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSD 359
            +         +   +   +    IE        ++ +   P     +          S 
Sbjct: 280 SMTDGRPSASIMIKQRPGSNAREVIENIKQRMEEIKESSFAPGMDYNIAYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +    T      LV +V+++ +   +  L+   ++ +++I T   + +LG ++ + ++  
Sbjct: 340 TSVLKTLLEAFLLVFVVVYLFLQDLRSTLIPAIAVPVSLIGTFFFMQMLGFSINMLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IG+ VD+ I+V E +  + + +  S + +           I    +      V + 
Sbjct: 400 LVLAIGIVVDNAIVVVEAVHVKMHEEKLSPYKASVAAIKEIGGAIIAITLVMSAVFVPVG 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F  G      R F++T+ ++I+IS   A+++  A+   ++R           L +FF++ 
Sbjct: 460 FMEGTVGIFYRQFSLTLAVAIVISGINALTLSPALCALLLRPAGHGRKKATWLRKFFVVF 519

Query: 536 DCIAIQFMRARFWGV 550
           +    +F R+   G+
Sbjct: 520 NRRYDRFERSYQLGL 534



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 93/256 (36%), Gaps = 10/256 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             ++ + A     L  +R         +        +      +  +         V+E 
Sbjct: 247 YGEIVLKALPDGSLLRLRDVATIEFDSEDYNMVSMTDGRPSASIMIKQRPGSNAREVIEN 306

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI----ISAIAMLIYIWIRF-KWYF 692
           +K+++ EI   S     +          +   I  V+     + + + + +++       
Sbjct: 307 IKQRMEEIKESSFAPGMDYNIAYDVSRFLDASITSVLKTLLEAFLLVFVVVYLFLQDLRS 366

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  T  F  + G   N+  + A++  IG  V++ +VV + +   +K++ 
Sbjct: 367 TLIPAIAVPVSLIGTFFFMQMLGFSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHE 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +S       +I E  G  +  ++      +P+    G+V      F++ +A  IV++ 
Sbjct: 425 EKLSPYKASVAAIKEIGGAIIAITLVMSAVFVPVGFMEGTVGIFYRQFSLTLAVAIVISG 484

Query: 810 SSSIFIAAPILLFIYD 825
            +++ ++  +   +  
Sbjct: 485 INALTLSPALCALLLR 500



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/292 (15%), Positives = 92/292 (31%), Gaps = 14/292 (4%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
            + G   S  F             +            + A       V  SN  ++     
Sbjct: 752  YIGSFYSSNFIRFGQMYKVMIQASPEYRMNPEDLYRLYAKNNDGNVVPYSNFMTMDRVFG 811

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              Q           +  +    ++   V++ V++   E++P         +  +      
Sbjct: 812  PSQITRYNMFTSALITGEGEGGISSGEVIQAVEEISKEVLPRGYDVEWSGITREEKD--- 868

Query: 667  RKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
              G   +I     + +Y+ +             I +L   I  +  F  L G+E N+ A 
Sbjct: 869  SGGQTILIFGICLLFVYLLLAAQYESLLLPFPVILSLPAGIFGSYFFLQLAGLENNIYAQ 928

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFIS 782
             A++ LIG    + +++     +    Y  + +S  +   K     L   + TS A    
Sbjct: 929  VALVMLIGLLGKNAILII----EMANQYRQSGLSIMEAAVKGAVSRLRPILMTSFAFICG 984

Query: 783  VLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++P+ V  G   +   S     A G+ +     IF+   + +    W ++  
Sbjct: 985  LIPLLVATGAGALGNRSIGTAAAGGMFIGTFVGIFLVPGLYILFETWSSRLK 1036


>gi|170700334|ref|ZP_02891346.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
 gi|170134768|gb|EDT03084.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
          Length = 1057

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/585 (10%), Positives = 158/585 (27%), Gaps = 33/585 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  +I  IGL+       P      +P  +P + +                  
Sbjct: 10  RPIFAVVLSIVIFAIGLISI-----PMLPAGEYPEVVPSSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             + ++ ++F      +  A +V   +  
Sbjct: 56  PKEIAESVAEPLEEAINGVEGIMYMKSVAGSDGSLQVVVTFLQGVDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            ++     +     D++       
Sbjct: 116 ALSRLPDEVRQYGVTTQKQSPTPLMYVSLYSPDNSRDSLYLRNYLTLHVKDELSRLTGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL       + +       N        G     + +    
Sbjct: 176 DVGVYGSGDYAMRLWLDPNRLASRGLAASDVIAAVREQNVQVSAGQLGAEPSPNKNDFLM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +                 +    +  +    +         I           
Sbjct: 236 SINVHGRL-------------RTVQEFGDIVLRNGDDGQVVKLSDVARIELGAGDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L     P                S   
Sbjct: 283 YFNDKHSAVVGIFLSPGANALEVAKAVYAKLDELSKRFPPGIAYRPVWDPTVFVRESIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G+V
Sbjct: 343 VQHTLIEAVVLVVLVVILFLQTWRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L  G+ VD  I+V E +     +  S   +           I    +      V + F  
Sbjct: 403 LATGIVVDDAIVVVENVERNIARGLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS   ++++  A+   ++R        +       F  +  
Sbjct: 463 GVTGQFYKQFAVTIAISTVISAINSLTLSPALAAKLLRPHGAPKDALTRALDRAFGWLFH 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                F R+     G+          +   +             +
Sbjct: 523 PFNRFFERSSDRYHGVVGRTLKRRGMVFAVYAALLAATALLFNAV 567



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  +  L G   N   +  ++   G  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLVAVPVSVVGTFAWLYLLGYSINTLTLFGLVLATGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S RD   +++ E  G  V  ++      +PMA   G        FA+ +A   V
Sbjct: 425 ---RGLSPRDAAHQAMREVSGPIVAIALVLCAVFVPMAFMSGVTGQFYKQFAVTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAINSLTLSPALAAKLLR 500



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 80/243 (32%), Gaps = 11/243 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V +  + +   +     +   N     + +     +   S      L+ + K +    
Sbjct: 801  EMVPIGSMVTVAPAYGPDPVVRYNGYPAADLIGDADPKVMSSSQAIAKLQQIAKDVLPPG 860

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                  +        S       IV   ++ + + + +   ++ W   L  I  + + + 
Sbjct: 861  ITLEWTDLSYQQVTQSN----AAIVVFPLAVMLVFLVLASLYESWTLPLAVILIVPVCMC 916

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L    L G + N+     ++ L+G +  + +++ +  R+   L        +   ++ 
Sbjct: 917  AALFGVWLSGGDNNVFVQVGLVVLMGLACKNAILIVEFARE---LEIQGKGVIEAALEAC 973

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   V TS+A     +P+ +    G  V  +  + +  G++      +F+     + 
Sbjct: 974  KLRLRPIVMTSVAFIAGSVPLLIGSGAGSEVRAATGVTVFAGMLGVTLFGLFLTPVFYVA 1033

Query: 823  IYD 825
            I  
Sbjct: 1034 IRK 1036


>gi|114047531|ref|YP_738081.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. MR-7]
 gi|113888973|gb|ABI43024.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. MR-7]
          Length = 1055

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/678 (10%), Positives = 182/678 (26%), Gaps = 46/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++        +  +D++P   P               + +    
Sbjct: 8   RPIFASVISIVIVLLGVIAMF-----KLPVDQYPYITPP-------------QVTISASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
               +    +  +  L   +     +   S +   +    +T++F      +  A  V  
Sbjct: 50  PGASSTTAAESVATPLEQEVNGVPNMIYMSSKSTNSGSTSVTITFDVGTNADLAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q  +  L +D +   +  + +  + ++      D      I  S          +   
Sbjct: 110 SAQQASGGLPIDVQTEGVTVSKDASVELLKLALTSDDERFDEIYLSNYATINIESALRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +   +      +     P  +     TT  +       N        G +   D  
Sbjct: 170 PGVGRTRNTGSRSYAMRIWLKPDAMAGYSLTTTDVINAIKAQNKESPAGTIGTQPNNDDI 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S +                   I                 +    +  
Sbjct: 230 SLTLPISVAGRLSSVQ-------------AFNEIIVRANPDGSIIRLRDIAGVELGSSAY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +            A L           V          
Sbjct: 277 TLQSQLNGENATILQVYLLPGANALEVTHKVKQAMAELSQKFPQGMKWEVFYDASIFIQE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +  L+   ++ +++I TLA +   G T+   S+
Sbjct: 337 SIDEVIHTLIEALVLVVLVVYLFLQNVRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIA 473
             +VL IG+ VD  I+V E +    + K  S   +  +        +  ++       + 
Sbjct: 397 LALVLAIGIVVDDAIVVVENVERLIHEKGMSAIDATRIAMKELSGALVATSLVLCAVFVP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINP 527
              L    G   R FA+ + +++LIS   A+++  A+   +       +      ++   
Sbjct: 457 VSFLAGITGIMYREFAVAITVAVLISTLVALTLSPALCALLLKPSKAPQRGFFHWLNRKL 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A+    A+   +  +I+F      +          + +G   + +    
Sbjct: 517 DLGTNQYVGLVALTNKYAKRSYLAFAIMFGGTYFIMSHLPSSFMPDEDQGRFFIDMTLPD 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++   + L+  +    +              +    +       + +      E   
Sbjct: 577 GSTVNRTEAILKKAEQYVRANPAVAYSFTLAGENRRSGSNQANGQFEVVLKPWAEREATH 636

Query: 648 LSTIQNTEIVGPKISREL 665
            +     + +   +   L
Sbjct: 637 ATVQSVMKAIDKDLKNVL 654



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 9/148 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  TL     FG   N  ++ A++  IG  V         + +N++
Sbjct: 363 VRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSLLALVLAIGIVV----DDAIVVVENVE 418

Query: 750 LY--TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFG 804
                  +S  D    ++ E  G  V TS+      +P+  + G + I    FA+ +   
Sbjct: 419 RLIHEKGMSAIDATRIAMKELSGALVATSLVLCAVFVPVSFLAGITGIMYREFAVAITVA 478

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++++   ++ ++  +   +        R
Sbjct: 479 VLISTLVALTLSPALCALLLKPSKAPQR 506



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  +    + +        + G++ NL    A + LIG +  + +++ +      
Sbjct: 889  SWSIPVAVLLIAPIALLGAAVTTLISGMQSNLFFQVAFIALIGMAAKNAILIVEFAN--- 945

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L+    +      ++        + TSMA  + VLP+ +    G     S ++P+  G+
Sbjct: 946  QLHQQGKTHISAALEAATMRFRPILMTSMAFILGVLPLVLSEGPGAVSRQSISLPILGGM 1005

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            V+A +  I       +    W  KN
Sbjct: 1006 VLATTIGIVFVPLFFVTTAGWVKKN 1030


>gi|294808638|ref|ZP_06767375.1| RND transporter, HAE1/HME family, permease protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|294444164|gb|EFG12894.1| RND transporter, HAE1/HME family, permease protein [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 528

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/539 (12%), Positives = 151/539 (28%), Gaps = 41/539 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    + +FP   P               + +    
Sbjct: 9   RPIFATVLALLIVVAGLVT-----LNILPVAQFPEITPPT-------------VQVSAVY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        +   S       +T++FA     +    +V  
Sbjct: 51  PGANAETVAQTVGIPIEQQVNGVDGMLYMSSNSSSSGAYSLTITFAVGTDIDMATVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L        +    +    ++         + +++  +       +DQ+   
Sbjct: 111 RVSIAQSSLPEPVVVQGVTVQKQSSNIVMFLTMTSQDSVYNSLYLTNYAKLNLVDQLTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD-S 236
                          +    DP  +R    +  ++       N        G    +D +
Sbjct: 171 PGVGAVNVMGAGDYSMRIWLDPEAMRIRNISPQQVYQSIQSQNVEVSAGYIGQPIGQDNN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY +  +  +                 +    I   E             I    A 
Sbjct: 231 NAFQYTLNVQGRL-------------KSPEQFGDIIIRREQNGAMLRLKDIARIDLGSAS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +        L A         V         
Sbjct: 278 YSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAASFPKGVSYNVTLDTTDVIH 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I T A+++  G ++   +
Sbjct: 338 ASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVMAAFGFSINTLT 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTI---FDSNITALI 472
           + G++L + + VD  I+V E           S   ++          I       +   I
Sbjct: 398 LFGLILAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEITGPIVGVVLVLLAVFI 457

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
            T+++    G   + FA+T+  S ++S F ++++  A+    +   K  +  I      
Sbjct: 458 PTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEKSKPSNFFIYKGFNK 516



 Score = 41.6 bits (95), Expect = 0.59,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 77/243 (31%), Gaps = 9/243 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R +L S     +S  N        +  Q           V   +++         + 
Sbjct: 267 DIARIDLGSASYSVVSRLNGKPTAAIAIYQQPGSNSLDVSKGVKAKMEELAASFPKGVSY 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T      I   +    +     + + +L+       W   +    T+ + +  T    
Sbjct: 327 NVTLDTTDVIHASIDEVMVTFFETTLLVILVIFLFLQNWRAVIIPCITIPVSLIGTFAVM 386

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI--SFRDLIDKSINETL 769
           A FG   N   +  ++     +V   V     + +N      +   S R+ + K++ E  
Sbjct: 387 AAFGFSINTLTLFGLI----LAVAIVVDDAIVVVENASRLLETGQYSPREAVTKAMGEIT 442

Query: 770 GRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  V   +      +P M + G  G +   FA+ +A   V++  +S+ +   +     + 
Sbjct: 443 GPIVGVVLVLLAVFIPTMMISGISGQLYKQFALTIAASTVLSGFNSLTLTPALCALFLEK 502

Query: 827 RAK 829
              
Sbjct: 503 SKP 505


>gi|325286521|ref|YP_004262311.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Cellulophaga lytica DSM 7489]
 gi|324321975|gb|ADY29440.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cellulophaga lytica DSM 7489]
          Length = 1080

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/575 (11%), Positives = 163/575 (28%), Gaps = 40/575 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I   GLL        Q  + +FP   P             + + + + 
Sbjct: 7   KRPVLAIVISVIIIFTGLLAI-----NQLPISQFPQIAP-------------TTVNIFIA 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKVT 116
                    ++     L + +    G+   +       +  + + F           K+ 
Sbjct: 49  YPGASADVLVKSTLIPLETSINGVQGMRYIASDATSAGEGTLRVIFEPGTDPNEAVVKIK 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V   L    ++  ++ T  +   ++      ++  +           + + +I  
Sbjct: 109 TRVDQVMPLLPELVQREGVIITPVQPSMLMYVNLYSNKKHTDEKFLYNYAYTKMVPEIQR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P R+R    +  ++       +   +    G    + S
Sbjct: 169 IDGIASAKILGSRKYAMRVWLKPDRMRAYNVSAEEVLKAMEDQSILARPGRIGRSSGKKS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y +  +                 +  +    I                ++      
Sbjct: 229 QALEYTLVYQNR-------------YSEPDQYKDIIIKANEEGEILTLKDIADVELGSEF 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L        +       +G+  I+        L+    P     +         
Sbjct: 276 FDIYSNLDGKPSASIVLKQTFGSNGSDVIDAVKDKLKELKEDLPPGIDYKISYDVSNFLD 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+F+ +   +  L+   ++ +++I    ++ L G ++ L +
Sbjct: 336 ASIEQVLHTLRDAFILVAIVVFLFLGDWRSTLIPIIAVPVSLIGAFFIMQLFGLSINLIT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +  +  +   + + ++          I    +  +   V
Sbjct: 396 LFALVLAIGIVVDDAIVVVEAVHAKMEEEHLTPYKAVKSVVGEIGGAIIAITLVMVSVFV 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      R F+ITM  SI+IS   A+++   +   ++++   K           
Sbjct: 456 PISFMTGPVGVFYRQFSITMAGSIVISALVALTLTPVLCAMLLKHNDGKRKKSAVDKFID 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                              I     +    L    
Sbjct: 516 WFNRGFERLTGSYVKILNKIVARRILTFGVLAIFC 550



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 98/274 (35%), Gaps = 13/274 (4%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             N   +      + + AN   ++  ++   +     +      + +      +  +   
Sbjct: 237 YQNRYSEPDQYKDIIIKANEEGEILTLKDIADVELGSEFFDIYSNLDGKPSASIVLKQTF 296

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYI 684
               + V++ VK K+ E+           +   +S  L   I + +  +  + I + I +
Sbjct: 297 GSNGSDVIDAVKDKLKELKEDLPPGIDYKISYDVSNFLDASIEQVLHTLRDAFILVAIVV 356

Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           ++    W   L  I  + + +        LFG+  NL  + A++  IG  V+D +VV + 
Sbjct: 357 FLFLGDWRSTLIPIIAVPVSLIGAFFIMQLFGLSINLITLFALVLAIGIVVDDAIVVVEA 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS-VLPMAVWGGSVI----GSFA 798
           +    K+    ++    +   + E  G  +  ++   +  V     +    +      F+
Sbjct: 417 VH--AKMEEEHLTPYKAVKSVVGEIGGAII--AITLVMVSVFVPISFMTGPVGVFYRQFS 472

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           I MA  IV++A  ++ +   +   +        +
Sbjct: 473 ITMAGSIVISALVALTLTPVLCAMLLKHNDGKRK 506



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/278 (10%), Positives = 78/278 (28%), Gaps = 15/278 (5%)

Query: 554  ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            I F               G+               +        +E     +   +    
Sbjct: 760  IRFGRFFKVYTQAAPEYRGLPSDLEKLFVKSEEGKMVPYSAFMKIEKALGPNEITRYNLY 819

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                +  L      S    + ++ V K+          +       +   E I       
Sbjct: 820  NSAAIRGLPAPGYTSGDAIKAIQEVAKESLPHGYDVAWEGLSYDEARRGNESIY------ 873

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I + + + +Y+ +      +   L  I +L + I  +     + G+  ++ A   ++ L+
Sbjct: 874  IFAIVLVFVYLVLAAQYESFLLPLAVILSLPVGIFGSFFLLKIMGLSNDVYAQIGMIMLV 933

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G    + V++ +     ++      +  +   +         + TS A    ++P+ +  
Sbjct: 934  GLLGKNGVLIVEFA---VQKRNQGSTILEAAIEGAKARFRPILMTSFAFIAGLIPLIIAT 990

Query: 790  GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G   I   +       G+++     + I   +      
Sbjct: 991  GAGAIGNKTIGGSSLGGMLLGTLFGVLIIPGLYYIFAK 1028


>gi|313667899|ref|YP_004048183.1| drug efflux protein [Neisseria lactamica ST-640]
 gi|313005361|emb|CBN86795.1| probable drug efflux protein [Neisseria lactamica 020-06]
          Length = 1067

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/618 (11%), Positives = 166/618 (26%), Gaps = 53/618 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS                  + L    
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-------------ITLRATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   +       ++L+F     +     +V  
Sbjct: 50  PGASAQVMEDSVLSVIERNMNGVEGLDYLSTSADSSGSGSVSLTFTPDTDENLAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   
Sbjct: 110 KLSEVLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNIVPELQRI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q          +    DP +L+    + A +       N        G        
Sbjct: 168 EGVGQVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNVQISAGSIGSLPAVRGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  + ++                 +    I          +      +G  +   
Sbjct: 227 TVTATVTAQGQLG-------------TAEEFGNVILRANTDGSNVYLKDVARVGLGMEDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +      A L                      
Sbjct: 274 SSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYFPQGMGWKTPYDTSKFVEI 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++
Sbjct: 334 SIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    +       +   V 
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMAAEGLPPKEATKKAMGQISGAVVGITAVLISVFVP 453

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           L  F    G   + FA+TM  SI  S F A+++  A+   +           +       
Sbjct: 454 LAMFSGATGNIYKQFALTMAASIAFSAFLALTLTPALCATMLKAIPKGHHEEKKGFFGWF 513

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    +        +A    +A    V    L  +     +         + +G + + V
Sbjct: 514 NKKFTAWTHGYEGRVAKVLRKALRMMVVYVGLAVVGVFLFMRLPTSFLPTEDQGFVMVSV 573

Query: 584 LANRPVDLSVVRSNLESL 601
                       + L  +
Sbjct: 574 QLPAGATKERTDATLAQV 591



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 102/291 (35%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADGDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               + L   P   V+  + +E V+K + E+    +++       +   +   + ++   +
Sbjct: 819  YPSMELSASPATGVSTGQAMEAVQKMVDELGGGYSLE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ + GG+      +    + +G++V    S+F+     + +  +  + A
Sbjct: 994  VPLYIAGGASSASQRAIGTTVFWGMLVGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 92/237 (38%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNVYLKDVARVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERMATLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMGWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAAEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +       +P+A++ G+       FA+ MA  I  +A  ++ +   +
Sbjct: 434 GQISGAVVGITAVLISVFVPLAMFSGATGNIYKQFALTMAASIAFSAFLALTLTPAL 490


>gi|53711972|ref|YP_097964.1| multidrug efflux membrane fusion protein [Bacteroides fragilis
           YCH46]
 gi|60680172|ref|YP_210316.1| AcrB/AcrD/AcrF family efflux transporter [Bacteroides fragilis NCTC
           9343]
 gi|265765316|ref|ZP_06093591.1| multidrug efflux membrane fusion protein [Bacteroides sp. 2_1_16]
 gi|52214837|dbj|BAD47430.1| multidrug efflux membrane fusion protein [Bacteroides fragilis
           YCH46]
 gi|60491606|emb|CAH06358.1| putative AcrB/AcrD/AcrF family efflux transporter [Bacteroides
           fragilis NCTC 9343]
 gi|263254700|gb|EEZ26134.1| multidrug efflux membrane fusion protein [Bacteroides sp. 2_1_16]
          Length = 1011

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/687 (12%), Positives = 187/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   GL+           +  +PS                        
Sbjct: 9   RRPVLSTVLTIIILLFGLI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPIDVKNAVDKENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E   R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLIVKEENDRIIRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S S 
Sbjct: 273 KMNGVPMVGIVVIPQPGANHIKIADAVYERMEKMQKDLPEDVKYSYGFDNTKFIRASISE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+I++F+ +   +  LV    I +++I    ++ L   ++ + S+  +V
Sbjct: 333 VKETVYVAFILVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLADFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFME 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLI 534
           G      R F+I +  S++IS F A++    +   ++  ++ ++               +
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLVKREKQNWFYLKTEPFFEGMNRL 512

Query: 535 PDCIAIQFMRARFWGVGISILFS-ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  F+  R+  +    +   I +    +       ++ +  I +       V    
Sbjct: 513 YSRSLAVFLHKRWIALPFVAITIGIIAFLWNYIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S              G  N  + L+        Q  V E +   + +
Sbjct: 573 IRDYTEDINDLVDSIVPDAESVTARVSSGSGNVRITLKDMKDRDYTQMDVAEKLSAAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 78/198 (39%), Gaps = 7/198 (3%)

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
              KI +     T +       K  RE     +   I++ + + + +  +F+ +   L  +
Sbjct: 815  MDKIAKETLDDTFRTALTGDSKEYRESSSSLMFAFILAIVLIYLILAAQFESFKDPLIIM 874

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             T+ L I   L F    GI  N+ +   ++ LIG    + +++ +    N+K   T    
Sbjct: 875  LTVPLAIAGALVFMYFGGITMNIFSQIGIIMLIGLVAKNGILIVE--FANLKQ-ETGEDK 931

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIF 814
               I  +  + L   + TS +  + ++P+A   G            +  G++V+   +++
Sbjct: 932  MTAIKDAALQRLRPILMTSASTILGLIPLAFASGEGCNQRIAMGTAVVGGMLVSTLLTMY 991

Query: 815  IAAPILLFIYDWRAKNAR 832
            I   I  +I   R+   +
Sbjct: 992  IVPAIYSYISTNRSNKLK 1009



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        L     N+ ++ AV+  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLVPCIVIPVSLIGAFFVMYLADFSINVLSMLAVVLAVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +  ++   +   E     + T++       P+    G        F+I ++  
Sbjct: 410 YVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMEGMTGRLFREFSIVISGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   R K  
Sbjct: 470 VIISSFAALTFTPMLATKLLVKREKQN 496


>gi|221067759|ref|ZP_03543864.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Comamonas testosteroni KF-1]
 gi|220712782|gb|EED68150.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Comamonas testosteroni KF-1]
          Length = 1048

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/690 (11%), Positives = 189/690 (27%), Gaps = 52/690 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   GLL       P   + +FP+  P               + +    
Sbjct: 8   RPKLAWVVAIFILLAGLLAI-----PALPVAQFPNVAPP-------------QISISATY 49

Query: 63  DDFVNGF-LQMYSDELRSFLKK-EGIGVFSMRQIQ---NKITLSFADSRFKENIADKVTL 117
                   ++  +  +   L   +G+  F          +IT +FA          +V  
Sbjct: 50  PGASATTVMESVTSVIEEELNGTKGLLYFDSSSGATGLAEITATFAPGTDPALAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIG 175
            ++   ++L     +  L         +++       D    + +  S   +R   ++I 
Sbjct: 110 RIKKAEARLPASVMQMGLQVEQASANFLLIYSLTYKGDDSGKNEVRLSDYAVRNINNEIR 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 +        + +    DP +L     + A ++      N       FG +    
Sbjct: 170 RVPGVGKVQYFGA-DVAMRVWVDPQKLLGYGLSVADVNAAIAAQNAQVPAGSFGSQPGSS 228

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  +  K  +S                +    +                 +     
Sbjct: 229 EQELSATIAVKGTLS-------------SPEEFGQIVLQARDDGSAVHLADVARLEVGQL 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                          A        +   T +      A L           V        
Sbjct: 276 DYSFASREDGHKGVAAAVQLAPGANAMQTAKAVKARLAELSQNFPDDIQYAVPYDTSRFV 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      T      LV +V+++ +   ++ L+    + + +  TLA++  LG ++ + 
Sbjct: 336 EVAIGKVIQTLVEAVVLVFLVMWLFLQNLRYTLIPTIVVPVCLAGTLAVMYALGFSVNMM 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++ G+VL IG+ VD  I+V E +      +  +   +      +    I    +  +   
Sbjct: 396 TMFGMVLAIGILVDDAIVVVENVERLMAEEGLTPLAATVKAMQQVSGAIVGITLVLVAVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDI 525
           + L F  G      R F++++ +SIL S   A++   A+   +        +++ K +  
Sbjct: 456 LPLAFMSGSVGVIYRQFSLSLAVSILFSGLLALTFTPALCATLLKPVAEDHHEEKKGLFG 515

Query: 526 NPLSRFFLIPDCIAIQFMR--ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                F  + +  ++   R   R     +     +  +   +T      + ++      V
Sbjct: 516 WFNRHFAKLTERFSLLNQRLLKRTGRYMLIYAAIVGGLGFAYTRMPESFVPYEDMGYYIV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               P   +  R+      +           +   +      G           +K    
Sbjct: 576 SVQLPPGATEARTEAVVRDMEAYVQSRPATAQAEFLMGYSFSGMGQNAAMAFVTLKDWSL 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                ++    +    +    L     + V
Sbjct: 636 RGKGQASWDEVQAFNQRFGS-LSDGAAMAV 664



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V            + +    +            +++   + ++    ++++  P 
Sbjct: 262 VHLADVARLEVGQLDYSFASREDGHKGVAAAVQLAPGANAMQTAKAVKARLAELSQNFPD 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +     I K I  ++ + + + + +W+  +   + L     + + +  T
Sbjct: 322 DIQYAVPYDTSRFVEVAIGKVIQTLVEAVVLVFLVMWLFLQNLRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L      G   N+  +  ++  IG  V+D +VV + +     +    ++      K++ +
Sbjct: 382 LAVMYALGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERLMAEEGLTPLAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A   G   VI   F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIVGITLVLVAVFLPLAFMSGSVGVIYRQFSLSLAVSILFSGLLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 61/146 (41%), Gaps = 11/146 (7%)

Query: 693  ALGAITTLILDITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            ++ A   LI+ +         +  G+  ++     ++T+IG +  + +++ +  +    L
Sbjct: 893  SIPAAVMLIVPVGALGSVLATSALGLSNDVYFKVGLITIIGLAAKNAILIVEFAKD---L 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
            +    S  +   ++        V TS+A  + V+P+A+  G+   S A  +  G++    
Sbjct: 950  HERGHSLTEAALQAARLRFRPIVMTSLAFILGVVPLALATGAGASSQA-AIGVGVIGGML 1008

Query: 811  SS-----IFIAAPILLFIYDWRAKNA 831
            S+     +F+    +  +   R + A
Sbjct: 1009 SATLLGVLFVPIFFVFVLSLRRKRRA 1034


>gi|224024519|ref|ZP_03642885.1| hypothetical protein BACCOPRO_01244 [Bacteroides coprophilus DSM
           18228]
 gi|224017741|gb|EEF75753.1| hypothetical protein BACCOPRO_01244 [Bacteroides coprophilus DSM
           18228]
          Length = 1047

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/554 (12%), Positives = 167/554 (30%), Gaps = 31/554 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I C+G L  +        + +FP  +P +                   
Sbjct: 7   RRPILSAVISVIIVCLGALAIV-----SLPITQFPDIVPPSVT---------VTARYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D ++  +    +   + +                +T + F      +  A  V   + 
Sbjct: 53  SADVMSKTVATPLERAINGVSGMTYMTTVCTNDGMSLTTIYFKVGTDPDVAAVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  +VT  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVVTEKEVNSMLMYLNVFSTDSTHTEKFVYNFADINILRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P RL         ++      N        G+   +     Q
Sbjct: 173 GLVEIMGSRDYAMRVWLNPGRLAAYNMVPQDVTEAIRRQNIEAAPGKTGIGSDKLPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y++              T  F        + +     G+    +             +  
Sbjct: 233 YVL------------QYTGKFSTPEEYGEIVLKAMPDGSLLRLKDVAQIEFDSEDYNMIS 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P  +  I       +          +  +  +   P     +          S  
Sbjct: 281 MTDGRPSASIMIKQRPGSNAREVIQNIKQRMEEIKESSFAPGMDYNIAYDVSRFLDASIQ 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV IV+++ +   +  L+   ++ ++++ T   + LLG ++ + ++  +
Sbjct: 341 SVLKTLLEAFLLVFIVVYIFLQDFRSTLIPAIAVPVSLVGTFFFMQLLGFSVNMLTLFAL 400

Query: 421 VLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD+ I+V E +  + + +  S + +           I    +      V + F
Sbjct: 401 VLAIGIVVDNAIVVVEAVHVKMHEEKLSPYKASVAAMKEIGGAIVAITLVMSAVFVPVGF 460

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G      R F++T+ ++I+IS   A+++  A+   ++R           L +FF++ +
Sbjct: 461 MEGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLRPAGKGKKKAVWLRKFFVVFN 520

Query: 537 CIAIQFMRARFWGV 550
               +F R    G+
Sbjct: 521 RGYDRFERRYDLGL 534



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 93/245 (37%), Gaps = 6/245 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V +   +S     IS  +     + +++ +           + + +++           
Sbjct: 265 DVAQIEFDSEDYNMISMTDGRPSASIMIKQRPGSNAREVIQNIKQRMEEIKESSFAPGMD 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
            N      +     I+  +  ++ + + + I ++I    +   L     + + +  T  F
Sbjct: 325 YNIAYDVSRFLDASIQSVLKTLLEAFLLVFIVVYIFLQDFRSTLIPAIAVPVSLVGTFFF 384

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             L G   N+  + A++  IG  V++ +VV + +   +K++   +S       ++ E  G
Sbjct: 385 MQLLGFSVNMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHEEKLSPYKASVAAMKEIGG 442

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V  ++      +P+    G+V      F++ +A  IV++  +++ ++  +   +    
Sbjct: 443 AIVAITLVMSAVFVPVGFMEGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLRPA 502

Query: 828 AKNAR 832
            K  +
Sbjct: 503 GKGKK 507



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 94/293 (32%), Gaps = 14/293 (4%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
            + G   S  F             +     K      + A       V  SN  ++     
Sbjct: 752  YIGSFYSSNFIRFGQMYKVMIQASPEYRMKPEDLYRLYAKNNDGNVVPYSNFMTMDRVYG 811

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              Q           +  +    V+   V+ +V++   E++P         V  +      
Sbjct: 812  PSQITRYNMFTSALITGEGEPGVSTGDVIRVVEEICKEVLPRGYDVEWSGVTREEKD--- 868

Query: 667  RKGIVGVIISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
              G   +I     + +Y+ +  +       L  I +L   +  +  F  L G+E N+ A 
Sbjct: 869  SGGQTFLIFGICLLFVYLLLAAQYENLLLPLSVILSLPAGVFGSYFFLQLAGLENNIYAQ 928

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFIS 782
             A++ LIG    + +++     +    +    +S  D   K     L   + TS A    
Sbjct: 929  VALVMLIGLLGKNAILIV----EMANQFRHQGLSAFDAAVKGAVSRLRPILMTSFAFICG 984

Query: 783  VLP-MAVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++P +   G   +   S     A G+ +     IF+   + L      A+ +R
Sbjct: 985  LIPLLMASGAGALGNRSIGTAAAGGMFIGTVVGIFLVPGLYLIFETLSARLSR 1037


>gi|329118133|ref|ZP_08246845.1| RND superfamily drug:proton (H+) antiporter [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465793|gb|EGF12066.1| RND superfamily drug:proton (H+) antiporter [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 1059

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 75/631 (11%), Positives = 174/631 (27%), Gaps = 40/631 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++      +    + ++PS      ISL                
Sbjct: 8   RPIFAWVIAIFIILAGII-----GINNLPVSQYPSVGAPT-ISL--------SATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S       ++TL+F     +     +V   L  
Sbjct: 54  AQVMEDSVLAVIERNMNGVEGLDYMSTSADSSGSGQVTLTFTPETDENFAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    ++N +  +  +   +++   +         E +  + R    +I   +   
Sbjct: 114 VLSQLPSTVQQNGVTVSKSRSNFLMVLMMSSK--TMGTEEIADYVERNIKPEIQRIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     + A++S      N        G            
Sbjct: 172 TARLFGSQR-AMRVWVDPKKLENYNLSMAEVSSAISSQNVQISAGELGALPNVAGQTISA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++S                +    I          +     +I           
Sbjct: 231 TITVEGQLS-------------TAEQFGNIIVRSNTDGSNVYLKDVADIKLGSQDYSTAT 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L              + +   T          L+                     S   
Sbjct: 278 RLNGEPAVGMAVMLSNKGNAMATATAVRKRMDELKRFFPGDMQWSAPYDTSTFVSISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A L  LG ++ + ++  +V
Sbjct: 338 VVHTLGEAILLVFVVMYIFLQNFRYTLIPTIVVPISLLGAFACLQYLGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +     S+    +       +   V L FF
Sbjct: 398 LVIGIVVDDAIVVVENVERIMSEEGLLPKEATKKAMSQISGAVVGITAVLISVFVPLLFF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     FA TM ++I  S F A+S+  A+   +     +K I              
Sbjct: 458 SGAQGKIFTQFAATMAIAIGFSAFFALSLTPALCATL-----LKPIPKGHHVEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F +      G        ++ +L  +     +     +++        D   +   
Sbjct: 513 FNRTFSKGTHGYEGWVAKLIKRAVPMLAVYIGLAAVAGLLYVRIPTSFLPSEDQGSLMMM 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           ++          +        + ++     S
Sbjct: 573 VQLPAGATKERTDATLATANDIIMKMPEVKS 603



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 65/170 (38%), Gaps = 18/170 (10%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL-------GFFALFGIEF----NLT 721
             ++ +A+ + +   ++ W   L  I  + L     +       GF ALFG+      ++ 
Sbjct: 875  GLAILAVFLVLAALYESWSIPLAVILVVPLGFLGIVLGVTGRNGFLALFGVAPQYLNDIY 934

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
                ++T+IG S  + +++ +  +    L    +       ++ +      + TS A  +
Sbjct: 935  FKVGMITVIGLSAKNAILIIEFAKD---LQEQGLGTVKAALQAAHLRFRPIIMTSFAFIL 991

Query: 782  SVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             V+P+    G+      +    +  G++V    S+F+     + +     
Sbjct: 992  GVVPLFFASGASSASQRAIGTTVLSGMLVGTILSVFLVPLFYVVVRRLFK 1041



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 86/243 (35%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q    + +        +  +    G+++A    +     ++    
Sbjct: 256 SNVYLKDVADIKLGSQDYSTATRLNGEPAVGMAVMLSNKGNAMATATAVRKRMDELKRFF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +            I K +  +  + + + + ++I  + + + L     + + + 
Sbjct: 316 PGDMQWSAPYDTSTFVSISIEKVVHTLGEAILLVFVVMYIFLQNFRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GAFACLQYLGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMSEEGLLPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++  G  V  +       +P+  + G+   +   FA  MA  I  +A  ++ +   +   
Sbjct: 434 SQISGAVVGITAVLISVFVPLLFFSGAQGKIFTQFAATMAIAIGFSAFFALSLTPALCAT 493

Query: 823 IYD 825
           +  
Sbjct: 494 LLK 496


>gi|94969857|ref|YP_591905.1| acriflavin resistance protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551907|gb|ABF41831.1| acriflavin resistance protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 1092

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/553 (11%), Positives = 149/553 (26%), Gaps = 44/553 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                 +L + I   G++        Q  +   P                   ++     
Sbjct: 10  RPVATSLLMAAILLAGMVA-----YFQLPVSALPQVDYPT-----------IQVITFYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D     +    +     +        +     + I L F  +   +    +V   + 
Sbjct: 54  ASPDVTASAVTAPLERQFGEVPGLQQMTSTSSSGASVIVLQFELNLNIDVAEQEVQAGIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S L  D     + + T    + +L+   +        +       +   +I      
Sbjct: 114 AAQSYLPTDLPTPPIYSKTNPADAPILT-LALTSKTVPLTQVEDLADTRLAQKIAQLPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  + +P++L         +       +  +    F            
Sbjct: 173 GLVSISGGQKPAVRIQVNPTQLSSYGLNLEDVRTAIQNTSLDQAKGSFDGPHQNFQIQAN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    +                      +I          F     N+          
Sbjct: 233 DQLLSSADFK--------------------NIVVAYRNNSPVFMKDVANVVDGAENEKQA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +   +    ++    L   L+          V          S  
Sbjct: 273 AWINTTPAVIMNIQRQPGANIIQVVDRITRLLPQLKTNLPASVDVSVVTDRTTTIRASVK 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +  GLV++V+F+ +      ++   ++ L++I T  ++ L G +L   ++  +
Sbjct: 333 DVEFELMLTVGLVVMVIFLFLRSVSATIIPSVAVPLSLIGTFGIMYLCGYSLNNLTLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I++ E I     +      +   G  +   TI    I+ +   + L F 
Sbjct: 393 TISTGFVVDDAIVMIENISRFIEEGDPPLQAALKGAEQIGFTIVSLTISLIAVLIPLLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FAIT+ ++IL+S   ++++   M   ++  K       +   R+      
Sbjct: 453 GDIVGRLFREFAITLSVTILVSAVVSLTLTPMMSARLL--KHTPESKRSNFYRWSENAFE 510

Query: 538 IAIQFMRARFWGV 550
             I F       V
Sbjct: 511 KTIAFYGRTLTWV 523



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 90/258 (34%), Gaps = 12/258 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+A R      ++     +   +   Q         V +  Q        +V++ + + +
Sbjct: 245 VVAYRNNSPVFMKDVANVVDGAENEKQAAWINTTPAVIMNIQRQPGANIIQVVDRITRLL 304

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAI 697
            ++           V    +  +          + + +  + M+I++++R      +   
Sbjct: 305 PQLKTNLPASVDVSVVTDRTTTIRASVKDVEFELMLTVGLVVMVIFLFLR-SVSATIIPS 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + L +  T G   L G   N   + A+    G+ V+D +V+ + +    +        
Sbjct: 364 VAVPLSLIGTFGIMYLCGYSLNNLTLMALTISTGFVVDDAIVMIENI---SRFIEEGDPP 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                K   +     V  +++    ++P+   G   G +   FAI ++  I+V+A  S+ 
Sbjct: 421 LQAALKGAEQIGFTIVSLTISLIAVLIPLLFMGDIVGRLFREFAITLSVTILVSAVVSLT 480

Query: 815 IAAPILLFIYDWRAKNAR 832
           +   +   +     ++ R
Sbjct: 481 LTPMMSARLLKHTPESKR 498


>gi|283852696|ref|ZP_06369961.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio sp. FW1012B]
 gi|283571874|gb|EFC19869.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio sp. FW1012B]
          Length = 1040

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 158/521 (30%), Gaps = 40/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +           + ++P  +P               + +    
Sbjct: 8   RPVFSAVLSIIITLAGAVCIA-----TLPIAQYPQIVPPT-------------VQVAATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
           D      ++   +  +   +   + +   +     +    + ++F  SR  +     V  
Sbjct: 50  DGASAQVVEESVATPIEQEVNGAQDMLYMNSVSSNDGRMVLNVTFDISRDLDLATVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   NS+L  +  +  +    +    +++   N        +  +        D +   
Sbjct: 110 RVALANSRLPSEVTRRGISVKKQSPDMLLVINLNSPDGSRDTLFLNNYAKINITDALARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +L  T + ++      N        G+       
Sbjct: 170 PGVGNVAVFGERDYGMRVWLDPDKLARLGLTASDVANAVRQQNVQAPAGQIGMPPAPPGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V+ K  +                 +    I     GA          +       
Sbjct: 230 EFQLTVQVKGRL-------------IDPGEFADIIVRTGSGAEIVRIRDVGRVELGSQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +G   ++    + A             +          
Sbjct: 277 SAFTRLNGQPTCTIQVFQLPGANGLDVVKQIRAIMAEQAGYFPSGMAYTIPYDTTKFVTA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+++ +  G+  L+   ++ ++++ T A + + G ++   ++
Sbjct: 337 SIHEVIKTLFEAVLLVLIVVYVFLQNGRATLIPMLTVPVSLVGTFAFMQVFGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E ++ +      +   +     +     +   ++  +   V 
Sbjct: 397 FGLVLAIGIVVDDAIVVVEAVQHKIDHGGLAPREATRAAMAEVAGPVIAISLVLISVFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F G   G   + FA+T+ +S+ +S   A+++  A+   I
Sbjct: 457 VAFMGGVTGRLYQQFALTLAVSVALSAICALTLSPALCALI 497



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 64/164 (39%), Gaps = 11/164 (6%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            + +    ++ + + + +  +++ W      I  + L +   +      G++ N+ A   +
Sbjct: 871  QSVFIFGLALVMVFLVLAAQYESWAVPFAVILAVPLAVFGAMAAQMWRGLDNNVYAQIGL 930

Query: 727  LTLIGYSVNDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            + LIG +  + +++  + +MR+         +  +    +        + TS A  + V+
Sbjct: 931  VMLIGLAAKNAILIVEFAKMRRE-----KGDTPAEAAVAASVLRFRPILMTSFAFILGVV 985

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            PM V    G +   +    +  G++ A    ++    +  FI  
Sbjct: 986  PMLVATGAGAASRHALGTAVFGGMLAATILGVYFVPALYCFIQR 1029



 Score = 38.9 bits (88), Expect = 3.6,   Method: Composition-based stats.
 Identities = 54/531 (10%), Positives = 138/531 (25%), Gaps = 45/531 (8%)

Query: 7    LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             + + +++C   ++      L        P       I   + L  G+ L    + +D V
Sbjct: 535  RLFVVTLVCLGAVVGGTYWLLKSVPTGFVPDEDQGYFIVNTI-LPEGASL----ERNDAV 589

Query: 67   NGFLQMYS--DELRS---FLKKEGIGVFSMRQIQNKITLSFA-------DSRFKENIADK 114
               ++     D   +    L    +   +     + + +               +   ++
Sbjct: 590  VRRMEETIAADPAVADVLSLGGYNLLTSTYSSYASALFVILKPWEERATPELSLDAAMNR 649

Query: 115  VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
               F  G+   + +    + +             Q+     +      + E + +   + 
Sbjct: 650  ARQFFAGIQEAMVMAFNPSPIPGLGTTGGFQFELQDRAGGQVGDLARVAYEFLDEARKEP 709

Query: 175  GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             ++            + QL    D  +++ L    + +             ++       
Sbjct: 710  AVT---GLFTDFSVDVPQLFYNLDRDKVQTLGIPPSDVFEAL--QTYLGGLYVNDFNKFG 764

Query: 235  DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             +       E +   S   +         +   P+  +          +    +      
Sbjct: 765  RTYRVMLQAEPRFRRSPSDIERFYVRSATREMVPLSTLGQTTDIRGPEYIRRFNLFRT-- 822

Query: 295  AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                        F+   +    A L    LP+            
Sbjct: 823  ------------------VEISGGTPPGFSSGQSLAAMAGLARSKLPLGYGYDWTGIAFQ 864

Query: 355  DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            ++ + S       +   +V +VL               ++ L V   +A     G    +
Sbjct: 865  EVKAGSQSVFIFGLALVMVFLVLAAQYESWAVPFAVILAVPLAVFGAMAAQMWRGLDNNV 924

Query: 415  PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
             +  G+V+ IGLA  + IL+ E  +    K  +   +        +  I  ++   ++  
Sbjct: 925  YAQIGLVMLIGLAAKNAILIVEFAKMRREKGDTPAEAAVAASVLRFRPILMTSFAFILGV 984

Query: 475  VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            V +      G  +       +   +L +    +  V A+  FI R      
Sbjct: 985  VPMLVATGAGAASRHALGTAVFGGMLAATILGVYFVPALYCFIQRTVDRLR 1035



 Score = 37.7 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 691 YFALGAITTLILDITKTLGFFALFG---IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              L  + T+ + +  T  F  +FG      N   +  ++  IG  V+D +VV + +   
Sbjct: 364 RATLIPMLTVPVSLVGTFAFMQVFGFSI---NTLTLFGLVLAIGIVVDDAIVVVEAV--Q 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
            K+    ++ R+    ++ E  G  +  S+      +P+A  GG        FA+ +A  
Sbjct: 419 HKIDHGGLAPREATRAAMAEVAGPVIAISLVLISVFVPVAFMGGVTGRLYQQFALTLAVS 478

Query: 805 IVVAASSSIFIAAPI 819
           + ++A  ++ ++  +
Sbjct: 479 VALSAICALTLSPAL 493


>gi|225423386|gb|ACN91209.1| CmeB [Campylobacter lari]
          Length = 1040

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 79/635 (12%), Positives = 171/635 (26%), Gaps = 41/635 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++      L    ++++P+  P               + +    
Sbjct: 9   RPVFASVVAIIISLAGII-----GLYSLPVEQYPALTPPV-------------VKVSATY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEGIGV----FSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +      +     S       +++ F      +     V  
Sbjct: 51  SGADAQTVAQTVAIPLEDAINGVENMIYMDSTSSSSGDMSLSVYFNIGTDPDQATVDVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    +KL  D KK  +         + ++           +E         +D +   
Sbjct: 111 RISAAMAKLPEDVKKTGVSVRKTGSSILAVASLYSPDGSMDELEVYNYAALNILDDLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    +P  L +   T   +       N        G   + +  
Sbjct: 171 PGVGNAVAIGSRNYSMRIWLNPDLLNKYQVTATDVIAAVREQNAQYATGKIGQEPVVERS 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  +  +                 +    I                 +G      
Sbjct: 231 PYVYSVTMQGRL-------------KNAKEFENIILRTNSDGSFLRLKDVAEVGLGSREY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        +   +   +   T E        L           V          
Sbjct: 278 TFNGRLNGNNATPILIFLQTGANAVNTAELVKAKFEELSKSFPEGLAYKVPYDTTLFIKA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+++ +   +  ++   ++ ++V+ T A L +LG ++ L ++
Sbjct: 338 SIQEVIKTFFEALILVVIVMYLFLKNFRSTIIPMIAVPVSVLGTFAGLYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             +VL IG+ VD  I+V E I     ++++      ++      A   +    +   +  
Sbjct: 398 FALVLAIGIVVDDAIIVVENIDRIIHEDENISIKDAAIQAMEEVAAPVVSIVLVLCAVFI 457

Query: 475 VVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V F  G  G   R FAIT+ +S+ IS F A+++  ++    +R  + K   I       
Sbjct: 458 PVSFISGFVGEIQRQFAITLAVSVTISGFVALTLTPSLCAIFLRRNESKPFYIVKKFNDI 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                       A      +  +       +                +        V+L 
Sbjct: 518 FDWSIEVFGAGVAYMLKRVVRFVLVFFIFLIALLGLFKIVPHSLVPNEDQGSFLSVVNLP 577

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
              S   + Q  D   +     +N    +     D
Sbjct: 578 AASSLNRTTQAMDTLAEQLGKNENIENIVGLIGYD 612



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 88/246 (35%), Gaps = 13/246 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +    + +        ++       ++V    +++   +++++  P     
Sbjct: 266 DVAEVGLGSREYTFNGRLNGNNATPILIFLQTGANAVNTAELVKAKFEELSKSFPEGLAY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I++ I     + I ++I +++  K +   +  +  + + +  T    
Sbjct: 326 KVPYDTTLFIKASIQEVIKTFFEALILVVIVMYLFLKNFRSTIIPMIAVPVSVLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + +   +     +IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALVLAIGIVVDDAIIVVENI-DRIIHEDENISIKDAAIQAMEEVAAP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            V    +  + +  + +       + G +   FAI +A  + ++   ++ +   +     
Sbjct: 445 VV----SIVLVLCAVFIPVSFISGFVGEIQRQFAITLAVSVTISGFVALTLTPSLCAIFL 500

Query: 825 DWRAKN 830
                 
Sbjct: 501 RRNESK 506



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 65/178 (36%), Gaps = 6/178 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                          G +   +  + + + +  ++ +W   L AIT +   +  +L F  L
Sbjct: 854  WSGSAYQEATSSGAGQIAFALGLLFVFLILAAQYERWLMPLAAITAVPFAVFGSLLFVWL 913

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             GI+ ++     +L LIG S  + +++ +   +         S  D    +        V
Sbjct: 914  RGIDNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--HLKKGKSIFDAAISAAKLRFRPIV 971

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             TS+A    +LP+      G +   +    +  G++ A++ +IF        +  +  
Sbjct: 972  MTSLAFICGILPLVFAYGAGSASRHAIGTGVVGGMIAASTVAIFFVPLFFYILESFNK 1029


>gi|311104645|ref|YP_003977498.1| multidrug efflux protein [Achromobacter xylosoxidans A8]
 gi|310759334|gb|ADP14783.1| multidrug efflux protein [Achromobacter xylosoxidans A8]
          Length = 1045

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/553 (11%), Positives = 155/553 (28%), Gaps = 42/553 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L           + ++P   P   +++G               
Sbjct: 8   RPVFAWVISLLIVLVGILSI-----RALPVAQYPDIAPP-VVNVG------------ASY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQ---NKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          I L+F      +  A +V  
Sbjct: 50  PGASAKVVEEAVTAIIEREMNGAPGLMYTSSSSDSTGWASINLTFKQGTNPDLAAVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L    +++ +      +   ++     D  +   ++         +  +   
Sbjct: 110 RLKAVEPRLPESVRRDGVRVEKAADNIQLVVSLKSDGGLDD-MQLGELAASNVLQALRRV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP++L  +  T   +       N        G + +    
Sbjct: 169 EGVGKVQSFGA-EAAMRIWPDPAKLTAMALTPGDIVSALRSHNARVTIGELGNQAVPKDA 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +                 +        +             +       
Sbjct: 228 PLNASIVAGESL-------------HTPEQFGNIPLRAQSDGATLRLKDVARVELGGTDY 274

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    +                +   T +        L     P     +          
Sbjct: 275 MYLSRVNGMTGTGLGIKLAPGSNAVETTKRIRATMQELAQYFPPGVTWDIPYETSTFVEI 334

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+++ +   +  L+    + + ++ TL ++  LG ++ + ++
Sbjct: 335 SIKKVLMTLLEAVALVFCVMYLFMQNFRATLIPTLVVPVALLGTLGVMLWLGYSINVLTM 394

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +    I    +  +   V 
Sbjct: 395 FGMVLAIGILVDDAIVVVENVERIMAEEGLPPREATVKAMGQISGAIVGITVVLVSVFVP 454

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF    G   R FA+T+ +SI  S F A+S+  A+   +++       +      +F 
Sbjct: 455 MAFFDGAVGNIYRQFAVTLAVSIAFSAFLALSLTPALCASLLKPIAAGHHEKRGFFGWFN 514

Query: 534 IPDCIAIQFMRAR 546
                       R
Sbjct: 515 RAFTRLTARYTTR 527



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 87/238 (36%), Gaps = 7/238 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L       +S  N        ++L           R+   +++      P  T 
Sbjct: 263 DVARVELGGTDYMYLSRVNGMTGTGLGIKLAPGSNAVETTKRIRATMQELAQYFPPGVTW 322

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
                    +   + +K ++ ++ +   +   +++  + +   L     + + +  TLG 
Sbjct: 323 DIPYETSTFVEISI-KKVLMTLLEAVALVFCVMYLFMQNFRATLIPTLVVPVALLGTLGV 381

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   N+  +  ++  IG  V+D +VV + +     +    +  R+   K++ +  G
Sbjct: 382 MLWLGYSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPREATVKAMGQISG 439

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             V  ++      +PMA + G+V      FA+ +A  I  +A  ++ +   +   +  
Sbjct: 440 AIVGITVVLVSVFVPMAFFDGAVGNIYRQFAVTLAVSIAFSAFLALSLTPALCASLLK 497



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 70/195 (35%), Gaps = 8/195 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            E ++        L      +  G      L   +  +   +S + + + +   ++ W   
Sbjct: 833  EAMRAMEALAAELPRGIGFDWSGQSYEERLSGNQAPILFALSVLVVFLALAALYESWSIP 892

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  I  + L +   +    L G+  ++     ++  IG S  + +++ +  +  ++    
Sbjct: 893  LAVILVVPLGVIGAVLGVTLRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVRD--- 949

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAAS 810
                     ++    L   V TS+A  + VLP+A+  G       +    +  GI+ A  
Sbjct: 950  GQGIVSATLEAARLRLRPIVMTSLAFGVGVLPLALATGAASGAQAAIGTGVLGGIITATV 1009

Query: 811  SSIFIAAPILLFIYD 825
             +IF+     L +  
Sbjct: 1010 LAIFLVPLFFLIVGR 1024


>gi|299069523|emb|CBJ40792.1| multidrug transport protein, acriflavin resistance protein domain
           [Ralstonia solanacearum CMR15]
          Length = 1069

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/692 (10%), Positives = 187/692 (27%), Gaps = 47/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L ++I  +G++        +  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSTLILLVGIISIW-----RLPISEYPEVVPPSVV---------VRAQFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + T        ++                   +    D++       
Sbjct: 116 AMPRLPDVVQRLGVTTIKSSPDLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLARINGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP+++ +   T  ++       N      + G          Q 
Sbjct: 176 QVQLFGSGDYSMRVWLDPNKVAERGLTANEVVRAIRDQNVQVAAGVIGGSPSLPGTDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    +      
Sbjct: 236 SVNAQGRLKTEQ-------------EFGDIILKSSPNGAVTTLRDVARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L+          +          S   
Sbjct: 283 LLDNKQAVAIPIFQAPGSNALQISDDVRKTMAELKEDFPEGVDYRIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T  L+ + G ++   S+ G+V
Sbjct: 343 VTHTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSIIGTFGLMLMFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAEGLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRA--------------MMIFIIRYKKMKSID 524
              G   + FA+T+ +S +IS F ++++  A              ++  ++         
Sbjct: 463 GLTGQFYKQFALTISISTVISAFNSLTLSPALAALLLKSHDAPKDLLARVMERGLGWIFR 522

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                                    V + I  ++  + +L  + +  G       Q  V 
Sbjct: 523 PFNRVFGAASESYGRSTSRVIGRKAVMLGIYLALIGLTVLLFNRVPGGFVPMQDKQYLVS 582

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +  D + +    + ++          G ++ +                  +       
Sbjct: 583 FAQLPDGASLDRTEDVIRRMSDIALKHPGVESAVAFPGLSINGFTNSPSAGIVFVTLKPF 642

Query: 645 IVPLSTIQNTEIVGPKISRE--LIRKGIVGVI 674
               +   +   +  +++++   I+   + V 
Sbjct: 643 DQRKTPNLSGGAIAGQLNQQYGAIKDAFIAVF 674



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    L   + N+     ++ L+G +  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSLFAAMLGVWLSHGDNNIFTQIGLVVLVGLACKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S      ++    L   + TS+A  + V+P+ +    G  +  +  + +  G+
Sbjct: 960  -LELQGRSIVAAAIEACRLRLRPILMTSIAFIMGVVPLVMSTGAGAEMRHAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +    ++  R
Sbjct: 1019 LGVTLFGLFLTPVFYVVLRTLASRRRR 1045



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T G   +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---LAVPVSIIGTFGLMLMFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIAE-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R+   K++ E  G  +  ++      +P+A      G     FA+ ++   V++A
Sbjct: 426 -GLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 FNS 487


>gi|157414662|ref|YP_001481918.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni 81116]
 gi|157385626|gb|ABV51941.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni 81116]
          Length = 1040

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 185/683 (27%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++            +A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMNAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  + +          F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 537 CIAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    ++  R     +     + +I  L+    N  +  +    + +        S
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEEDQGLM-ISIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
                  K          V + +
Sbjct: 641 QIIAELNKKFAFDRNASSVFIGL 663



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|322647910|gb|EFY44385.1| acriflavine resistance protein B [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
          Length = 973

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/602 (10%), Positives = 155/602 (25%), Gaps = 29/602 (4%)

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           +   S      +ITL+F      +    +V   LQ     L  + ++  +         +
Sbjct: 2   MSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFL 61

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++             + S  +     D I  +               +    +P+ L + 
Sbjct: 62  MVVGVINTDGTMTQEDISDYVAANMKDPISRTSGVGDVQLFGSQ-YAMRIWMNPTELTKY 120

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T   +       N        G             +  +  ++               
Sbjct: 121 QLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNASIIAQTRLTSTD------------ 168

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +        +        I                  +          +   T 
Sbjct: 169 -EFGKILLKVNQDGSQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTA 227

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                    +     P    +           S      T      LV +V+++ +   +
Sbjct: 228 TAIRAELKKMEPFFPPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFR 287

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE-ENRK 444
             L+   ++ + ++ T A+L+  G ++   ++ G+VL IGL VD  I+V E +      +
Sbjct: 288 ATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENVERVMTEE 347

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMF 501
                 +      +    +    +      + + FFGG      R F+IT+  ++ +S+ 
Sbjct: 348 GLPPKEATRKSMGQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVL 407

Query: 502 TAISIVRAMMIFI-----------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
            A+ +  A+   +            +       +           D +         + +
Sbjct: 408 VALILTPALCATMLKPVAKGDHGEGKKGFFGWFNRLFDKSTHHYTDSVGNILRSTGRYLL 467

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              I+    +   +         + +G     V           +  L+ +    ++ + 
Sbjct: 468 LYLIIVVGMAYLFVRLPSSFLPDEDQGVFLTMVQLPAGATQERTQKVLDEVTDYYLNKEK 527

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
            + E  F V      G           +K         + ++           ++    +
Sbjct: 528 ANVESVFAVNGFGFAGRGQNTGIAFVSLKDWADRPGEKNKVEAITQRATAAFSQIKDAMV 587

Query: 671 VG 672
             
Sbjct: 588 FA 589



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  D+  +      + L        +++     +    KK+    
Sbjct: 182 SQVRLRDVAKIELGGENYDVIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFF 241

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P               +  I + +  ++ + I + + +++  + +   L     + + + 
Sbjct: 242 PPGMKIVYPYDTTPFVKISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLL 301

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A FG   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 302 GTFAVLAAFGFSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMTEEGLPPKEATRKSM 359

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +
Sbjct: 360 GQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPAL 416



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 7/183 (3%)

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFA 693
           E +         L +    +  G      L       +  IS I + + +   ++ W   
Sbjct: 763 EAMAMMEELASKLPSGIGYDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIP 822

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
              +  + L +   L      G+  ++     +LT IG S  + +++ +  +  M     
Sbjct: 823 FSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGK 882

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                +   +++   L   + TS+A  + V+P+ +    G     +    +  G+V A  
Sbjct: 883 G--LVEATLEAVRMRLRPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATV 940

Query: 811 SSI 813
            +I
Sbjct: 941 LAI 943


>gi|170022988|ref|YP_001719493.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Yersinia
           pseudotuberculosis YPIII]
 gi|169749522|gb|ACA67040.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           pseudotuberculosis YPIII]
          Length = 966

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 189/686 (27%), Gaps = 47/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITLVGWVS-----LYVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +       L + +           +     + +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAVASPLEAQVNGVSHMLYMESTSANNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       Q    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPQQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP R+  L  +   +       N        G      +
Sbjct: 169 ISGVGDVQVFGARDYSMRVWLDPQRMESLNVSVQDIVAALQQQNVQAAAGQIGSSPSMPN 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  ++                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLTDAR-------------QFADVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A         +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLSAAFPADLTYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL V+++ +   +   +   ++ ++++ T A+L + G +    S
Sbjct: 336 ATLHEIAVSLTLTLIVVLAVVYLFLQSLRATFIVALTVPVSLLGTFAVLYVFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +     N  + S   +     S+    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLSNDPHLSPAEATRQAMSQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V +    G      R FA+T+  ++++S   A+++  A+   +++ + + +  +      
Sbjct: 456 VPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPALCAVLLKRRTLATTGMFGTINK 515

Query: 532 FLIP----DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            L             +  R      ++L    +    ++      +  +      V    
Sbjct: 516 GLDRARDGYVGLTGRINRRAVFSIAALLLVGLATWWGYSRLPTSFLPEEDQGYFFVSLQL 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   S+ R+     Q+      N   E    +        + A      +V   +     
Sbjct: 576 PDGASLNRTQTVMDQMYQQVSTNEAVEDVIKITGFSLLSGNNAPNAGFAIVM--LKPWGQ 633

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
              I             +    I+ V
Sbjct: 634 RPHIDRVLASIQANLAAIPSAMIMAV 659



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P                  + +  V + ++ I +L  +++             T+ +
Sbjct: 316 AAFPADLTYEINYDSTLPVTATLHEIAVSLTLTLIVVLAVVYLFLQSLRATFIVALTVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +      +S  +   
Sbjct: 376 SLLGTFAVLYVFGYSANTLSLFAIILALTIVVDDAIVVVENV-ERLLSNDPHLSPAEATR 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++++  G  + T++      +P+A+     G +   FA+ ++  +++++ +++ ++  +
Sbjct: 435 QAMSQIAGPIIATTLVLMAVFVPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPAL 494

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 495 CAVLLKRR 502


>gi|224826094|ref|ZP_03699197.1| acriflavin resistance protein [Lutiella nitroferrum 2002]
 gi|224601731|gb|EEG07911.1| acriflavin resistance protein [Lutiella nitroferrum 2002]
          Length = 1010

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/600 (11%), Positives = 168/600 (28%), Gaps = 46/600 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +    +L +++   G++        +  +DR+P+                    L   
Sbjct: 9   RRHVLAFVLSAVVVLFGVVA-----YQRIGVDRYPAIEQPVLT---------VSTRLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +    I   +    ++ +T+ F   +       +V   ++ 
Sbjct: 55  SPEVIDQSVTQVIEAAVNGIPGVDILDSTSYTGRSSVTILFDLDKDINVAFAEVQSKIEQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    +  ++  T +    I+      D+      E  +        Q+   +   
Sbjct: 115 VRRSLPEQAESPVISKTDDNASPILFLALTGDRTER---ELYLFANNVLKKQLETIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    +  E DP +L     T  ++       +  + G                
Sbjct: 172 EVGIRGRGERVIRVELDPVQLAAYKLTAKEVQTAFAREHRQEAGGYLTDGPREYLVDLDQ 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  + G+ +                       G           +    A V    
Sbjct: 232 EFHSVSALKGLVIGWY--------------------GQAPVKLGDVARVIDGEADVRALS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                             +    ++     L   +R    P     +   +         
Sbjct: 272 RFNHQPCVTIGIVRIPNTNTVAIVDAVLKRLDTQIRPTLPPGLRLDIAGNSADFIREMVR 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +        L  +V+++ +   +  L+   +I ++++  +A++  LG T    S+  +
Sbjct: 332 ALQEHLLEGTLLAALVVWVFLRNWRATLIVALAIPVSLLGAVAVMYFLGYTFNAISLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L IG+ VD  I+V E I       +    +   G       +  + +  +   + + F 
Sbjct: 392 LLLIGVVVDDAIVVLEAIHRREENGEDPVPAAIHGAREVVFAVVAATLALVAIFLPVVFL 451

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFF 532
                R    FA+ +   +L+S+  A+++   +            +  +  +        
Sbjct: 452 SSTVGRLFNTFAVVVSCGVLVSLLVAVTLTPMLCSRFLKAQPRHGRVFRGFEQVFEGLER 511

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +    ++          V   +L       L       Y  + +G  Q+ V       L+
Sbjct: 512 VYKVMLSWALHHPWSVLVAALLLVVAGLTSLSQIKVEFYPKEDEGRFQMSVKVPVGASLA 571



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 80/222 (36%), Gaps = 7/222 (3%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +              VL+ +  +I   +P     +         RE++R     ++ 
Sbjct: 280 TIGIVRIPNTNTVAIVDAVLKRLDTQIRPTLPPGLRLDIAGNSADFIREMVRALQEHLLE 339

Query: 676 SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
             +   + +W+  + W   L     + + +   +      G  FN  ++ A+L LIG  V
Sbjct: 340 GTLLAALVVWVFLRNWRATLIVALAIPVSLLGAVAVMYFLGYTFNAISLLALLLLIGVVV 399

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +D +VV + +    +                 E +   V  ++A     LP+     +V 
Sbjct: 400 DDAIVVLEAIH---RREENGEDPVPAAIHGAREVVFAVVAATLALVAIFLPVVFLSSTVG 456

Query: 795 G---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               +FA+ ++ G++V+   ++ +   +       + ++ R+
Sbjct: 457 RLFNTFAVVVSCGVLVSLLVAVTLTPMLCSRFLKAQPRHGRV 498



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 71/203 (34%), Gaps = 9/203 (4%)

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF---KW 690
            + + ++    E               +        G +  +    ++++Y+ +      +
Sbjct: 811  LADAMQLVRREAATFLPPGYRIEFLDEARELDRTGGELVSVFVLASLMLYLILAAQFNSF 870

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                  +    L +   L    L G   N+ +V  ++ LIG    + +++ D      + 
Sbjct: 871  RQPALIMLAEPLALVGGLLALWLTGQTLNVYSVIGLVLLIGLVAKNGILLVDI---TNQY 927

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
            +   ++  + +  S    L   + T++   +++LP A+    G    G  A+ +  G++ 
Sbjct: 928  HVQGLTVDEALRVSCPIRLRPVLMTTLTVILAMLPAALGLSAGAETNGPLAVAVIGGLIF 987

Query: 808  AASSSIFIAAPILLFIYDWRAKN 830
            +   ++ I     L +     + 
Sbjct: 988  STVLTLLIIPCGYLLLERHGLRR 1010


>gi|58584446|ref|YP_198019.1| preprotein translocase subunit SecF [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
 gi|58418762|gb|AAW70777.1| Preprotein translocase subunit SecF [Wolbachia endosymbiont strain
           TRS of Brugia malayi]
          Length = 293

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 92/289 (31%), Positives = 160/289 (55%), Gaps = 10/289 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIPD + I+F + R     ISI+  I S+ ++   G+N GIDF GGI + + +      
Sbjct: 4   RLIPDNLNIKFSKYRKLTALISIILVIFSLFIVVLRGVNLGIDFTGGILMEIKS-----S 58

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S   + L  L+    + Q+     N ++  +    +   + ++ ++      ++    + 
Sbjct: 59  SEDHAVLNILKENGFTIQSSKAGNNLVMYFR----EEGNEGKIKKIKSVLEEKLGSSISY 114

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  + +GP+IS   I +GI+ + I+ + +  Y+W RF W    G    LI D+  T+GF 
Sbjct: 115 RKIDYIGPRISSTQILEGILSMFIAIVGIFFYVWFRFNWQCGFGGTIALIHDVILTVGFV 174

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L GI+FN+++VAA+LT+IGYS+N+ VV+YDR+R+  K         D++D SIN TL R
Sbjct: 175 SLTGIKFNISSVAALLTVIGYSINNSVVIYDRIREYQKSGKNRQ-MSDIVDASINVTLFR 233

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           +V TS    ++ +P+ +     +  F++ + FGI++   S+IFI+APIL
Sbjct: 234 TVLTSGTTLLATIPLTLICTDTVRDFSLIIFFGILIGTCSAIFISAPIL 282


>gi|221069408|ref|ZP_03545513.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Comamonas testosteroni KF-1]
 gi|220714431|gb|EED69799.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Comamonas testosteroni KF-1]
          Length = 1059

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/590 (11%), Positives = 164/590 (27%), Gaps = 42/590 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +   G++        +  + +FPS  P               + +    
Sbjct: 8   RPIFAWVIAIFVIIAGVISI-----TKLPVAQFPSVAPPT-------------INVTATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
               +  +       +   +   +G+           Q  +T++FA     +     V  
Sbjct: 50  PGATSQTMTDSVLQLIEREINGAQGLMYMEASAPAGGQGTLTVTFAPGTNPDLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V  +L    +   +         +++     +   +   + +  + R  + +I   
Sbjct: 110 RLSRVLPRLPQVVQALGVRVDKSMSNFLMILAFQAESGETSRDDIADYVNRNVVPEIQRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP++L+    + A ++      N    G   G        
Sbjct: 170 DGVGKAQLFASGR-AMRVWVDPAKLQGFGLSIASVNAAIAAQNQQISGGALGNLPSTPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    ++S                +    +                 I   +   
Sbjct: 229 TTTATIVVPGQLS-------------TPEEFGEVVLRSNSDGSTVRLKDVARIELGIESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L             +  +   T +      A +                      
Sbjct: 276 AFESRLDGKPAVAMAVQLTSTANAMATAKLVKAKMAEMEPFLPAGVKWSSPYDTSKFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+ + +   ++ L+    + + ++ T A++ + G T+ + ++
Sbjct: 336 SIEKVVHTLLEAIVLVFIVMLIFLQNIRYTLIPTIVVPIALLGTFAVMLVAGLTINILAM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +      +      +    +    +  +   + 
Sbjct: 396 FAMVLVIGIVVDDAIVVVENVERIMAEEGLPPKEATIKAMGQIQGAVVGITVILVTVFLP 455

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L  F    G   R F++ M +SI  S F A+++  A+   +++                 
Sbjct: 456 LAMFSGATGNIYRQFSLVMAISIFFSGFFALTLTPALCATMLKPIPKGHAHDKKTGLLGP 515

Query: 534 IPDCIAIQFM-RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +    +F    R +   +S +        +    +  G+ F       
Sbjct: 516 FYNWFNRKFEAGTRRYSAALSGVVKRSVQAFIVYLLVIAGVVFMFLRLPT 565



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 97/264 (36%), Gaps = 11/264 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +  ++L V   +   + +          G +    ++G  +  +  Q +PG +    
Sbjct: 782  MQPEDVMRLTVPNAQGQLVELSTMVNAKWISGPMQLTRYNGYPSMSITGQAKPGFTSGDA 841

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
                    +              +   K         ++    S +A+ + +   ++ W 
Sbjct: 842  MKEMEKLAQELPDGFGYEWTGQSLDEKKAGS----SAMLLYAFSILAVFLCLAALYESWS 897

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  +  + L +   +    + G+  ++    A++T+IG S  + +++ +  +    L+
Sbjct: 898  IPLSVLLVVPLGVFGAVAGMLMRGMPNDIYFQVALITVIGLSAKNAILIVEFAKD---LH 954

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVA 808
                S  +   ++ +      + TS+A  + V+P+ +  G+           + +G+V+ 
Sbjct: 955  AEGKSALEAALEAGHLRFRPILMTSLAFILGVVPLYIASGASAASQKEIGTGVFWGMVIG 1014

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               S+F+     + +++   K ++
Sbjct: 1015 TPISVFLVPVFFVAVFNLFGKKSK 1038



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 93/235 (39%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V      ++      +        +        +++A  ++++    ++   +P 
Sbjct: 260 VRLKDVARIELGIESYAFESRLDGKPAVAMAVQLTSTANAMATAKLVKAKMAEMEPFLPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               ++     K  +  I K +  ++ + + + I + I  +   + L     + + +  T
Sbjct: 320 GVKWSSPYDTSKFVKISIEKVVHTLLEAIVLVFIVMLIFLQNIRYTLIPTIVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G+  N+ A+ A++ +IG  V+D +VV + +     +    +  ++   K++ +
Sbjct: 380 FAVMLVAGLTINILAMFAMVLVIGIVVDDAIVVVENV--ERIMAEEGLPPKEATIKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      LP+A++ G+       F++ MA  I  +   ++ +   +
Sbjct: 438 IQGAVVGITVILVTVFLPLAMFSGATGNIYRQFSLVMAISIFFSGFFALTLTPAL 492


>gi|116328772|ref|YP_798492.1| preprotein translocase subunit SecF [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331683|ref|YP_801401.1| preprotein translocase subunit SecF [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121516|gb|ABJ79559.1| Preprotein translocase, SecF subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125372|gb|ABJ76643.1| Preprotein translocase, SecF subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 312

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 86/312 (27%), Positives = 150/312 (48%), Gaps = 21/312 (6%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHG--LNYGIDFKGGIQLGVLANRPVD------- 590
             F++ ++  +G S++  +      +         +DF GG++  +  ++  D       
Sbjct: 2   FDFIKYKYVSIGFSLVLIVFGFGYTYFVHGGFANSLDFNGGLRTVIEFDQNTDRKKLESY 61

Query: 591 -----LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                +  V   L+  +               L + + + G        L  +   I+ +
Sbjct: 62  FAENKIEAVLLLLDKEKHHYQIDIGLGSLDLILQKYKEKSGLKPTDKVELSGIDALISIL 121

Query: 646 VPLSTIQ-----NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           +    I      +   VG  +  EL   GI  + ++   +L YI  RF++ FALGAI  L
Sbjct: 122 IADFGIDKSNVLSANQVGAIVGGELSSTGITLLGLTMAIILAYISFRFQFKFALGAIVAL 181

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             D+  T+ F   F I+ ++  +AA+LTL+GYS+ND +VV+DR+R+N        +F + 
Sbjct: 182 THDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSSGNL-DQTFGET 240

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I+ +IN+TLGR+  TS A  IS++ + + G + +  FA  + FGI++   SSIFIAAP+ 
Sbjct: 241 INAAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYILTFGIIIGTYSSIFIAAPL- 299

Query: 821 LFIYDWRAKNAR 832
           + IYD   + AR
Sbjct: 300 VDIYDHIIRKAR 311


>gi|116748678|ref|YP_845365.1| preprotein translocase subunit SecF [Syntrophobacter fumaroxidans
           MPOB]
 gi|116697742|gb|ABK16930.1| protein translocase subunit secF [Syntrophobacter fumaroxidans
           MPOB]
          Length = 351

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 90/348 (25%), Positives = 149/348 (42%), Gaps = 47/348 (13%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             LI   I + F+  R+     S++  +  +   +  GLN G+DF GG  L V  ++P +
Sbjct: 1   MELIKPGINLNFVGMRYKAFLASVVVLLIGLAAFYLKGLNMGVDFAGGTLLQVKFSQPTN 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              +R  L+         Q    E N  +         +                   +T
Sbjct: 61  PDAIREALKEEAANSTIQQVGSKENNEYLIRTDAMPSELQALSQKFDRDLAKAFGEGKAT 120

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY------------------- 691
           +   E+VGPK+  +L +K +  +  + + + IYI  RF++                    
Sbjct: 121 VLRVEMVGPKVGEDLRQKALKAMYYALLFIAIYISGRFEFKWVTSAVMGGVLMVGIYFME 180

Query: 692 ---------------------------FALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                                      +ALGA+ +L+ DI  T+G F +F  EF +   A
Sbjct: 181 ALQTNVTYLVVAALCVTLVLCWILKLPYALGALVSLVHDILITIGIFIIFDKEFTIEVFA 240

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+LTL GYS+ND ++VYDR+R+N +       F  +++ +IN+TL R++ TS      +L
Sbjct: 241 ALLTLAGYSLNDTIIVYDRIREN-RNKDRKQKFDVMVNDAINQTLSRTLLTSTCVLFVLL 299

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +   GG+VI  F   M  GI+    SS+F+A+PIL+   D   K  +
Sbjct: 300 CLFFLGGAVIHDFTFAMLIGIITGTYSSVFVASPILIIYEDLTKKGLK 347


>gi|291617390|ref|YP_003520132.1| MexB [Pantoea ananatis LMG 20103]
 gi|291152420|gb|ADD77004.1| MexB [Pantoea ananatis LMG 20103]
          Length = 1051

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/552 (11%), Positives = 147/552 (26%), Gaps = 39/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P               + +  + 
Sbjct: 10  RPIFAAVLSVLIFMTGLIAI-----PLLPISEYPDVVPP-------------SVQVRAEY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                  +    +  L   +   E +         + +   T++F      +    +V  
Sbjct: 52  PGANPKAIADSVATPLEEAINGVENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  D ++  + T        ++           ++        +  D++   
Sbjct: 112 RVAQAEARLPEDVRRLGITTQKMSPTLTLVVHLFSPNNTYDSLYLRNYATLKVKDELARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP+++     T + +       N        G   L++  
Sbjct: 172 PGVGQIQIFGAGEYAMRVWLDPNKVAARGLTASDVVKAMQEQNVQVSAGQLGAEPLKNRA 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +             +    +    +                   I       
Sbjct: 232 IFCCPLICR-------------DGWKTSSSLAISFLKTSEDGSLVRLRDVARIEMGSGSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +              L                      
Sbjct: 279 ALRSQLNNKDAVGIGIFQAPSANAIDLSNAVRAKMDELATRFPNDVKWAAPYDPTVFVRD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+
Sbjct: 339 SIKAVVQTLLEAVFLVVLVVILFLQTWRASIIPLLAVPVSVVGTFSVLYLLGFSLNTLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +        S   +           I    +      V +
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIEMGLSPKAAAHQAMREVSGPIIAIALVLCAVFVPM 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + FA T+ +S +IS   ++++  A+   +++  +        L      
Sbjct: 459 AFLSGVTGQFYKQFATTIAISTVISAINSLTLSPALAAMLLKDHQAPKDMPTRLIDRLFG 518

Query: 535 PDCIAIQFMRAR 546
                      R
Sbjct: 519 WIFRPFNRFFQR 530



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 55/147 (37%), Gaps = 8/147 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPVTMLSALVGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     + +  G
Sbjct: 958  -LEIQGKGITEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGEGAGAEVRGVTGVTVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++      +F+     + +     + A
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRKA 1042



 Score = 45.5 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 54/142 (38%), Gaps = 12/142 (8%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG--YSVNDKVVVYDRMRKN 747
           W  ++  +  + + +  T     L G   N       L+L G   ++   V     + +N
Sbjct: 365 WRASIIPLLAVPVSVVGTFSVLYLLGFSLNT------LSLFGLVLAIGIVVDDAIVVVEN 418

Query: 748 M-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
           + +     +S +    +++ E  G  +  ++      +PMA   G        FA  +A 
Sbjct: 419 VERNIEMGLSPKAAAHQAMREVSGPIIAIALVLCAVFVPMAFLSGVTGQFYKQFATTIAI 478

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
             V++A +S+ ++  +   +  
Sbjct: 479 STVISAINSLTLSPALAAMLLK 500


>gi|83858616|ref|ZP_00952138.1| putative acrB/acrD/acrF acriflavin resistance family protein
           [Oceanicaulis alexandrii HTCC2633]
 gi|83853439|gb|EAP91291.1| putative acrB/acrD/acrF acriflavin resistance family protein
           [Oceanicaulis alexandrii HTCC2633]
          Length = 1044

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 74/580 (12%), Positives = 174/580 (30%), Gaps = 38/580 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +  ++I   G +      L    L   P       +S+  D  G         
Sbjct: 9   RRPVLAFVASALIIVFGFM-----GLRDLPLREMPDVDRP-VVSVSADYPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S ++       S R   +++T++F   R  E  A+ V   +  
Sbjct: 55  NAEVMENRVTQVIEDSLSGIEGVDTISSSSRDGSSRVTITFTLERDIEAAANDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  ++  D +   +          +      D++ S   E +    R  +D+  + +   
Sbjct: 115 IRDRMPDDVQNLEVSKQDSDARPFLWYMLGSDRMTSE--ELTDYADRYIVDRFTVLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP  +     T A +       N    G                
Sbjct: 173 NVRIGGQRRYAMRIWLDPYEMAARSITVADIENALRSENVEAPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                VE +   L                                  ++           
Sbjct: 217 ---GAVETTDTQLFVRVERLFANEEAFARMPIRVSEDGHVIRLGEVADVELAAEEHRAMF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +++ +     E        L+         I    +      S   
Sbjct: 274 RGNGQNMVGLGFVRQSKANSVAVAEQINAAIDRLQPQLPEGMEIIRGSDDTVFIKESIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A+ A LV++V+++ +   +  +V    + + ++ T A+L+  G ++ + ++  +V
Sbjct: 334 VWRTFAVAATLVVLVIYLFLGSFRAAIVPAAVVPVCMVGTFAILAAGGFSINILTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD +I+V E I+      +    + + G  + +  +  +  T +   + L F  
Sbjct: 394 LAIGLVVDDSIVVLENIQRRVDLGEPPMLASERGGRQVFFAVIATTATLVAVFMPLIFLP 453

Query: 482 GGAVRGF---AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R F   A+T+  ++++S F A+++   M   +++           ++         
Sbjct: 454 GLIGRIFAELAVTITGAVVLSSFVALTLSPMMTSKLLKPSTELRGPAKWVNDGLDKVQNS 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
             Q ++       I     + ++            +    
Sbjct: 514 YRQSLKLILGVPWIVAPLILVAVAGSAFMFSKLPGELTPP 553



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 85/258 (32%), Gaps = 12/258 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           ++ +  +    +  +    +     +     F G    +V L +          V E + 
Sbjct: 242 RMPIRVSEDGHVIRLGEVADVELAAEEHRAMFRGNGQNMVGLGFVRQSKANSVAVAEQIN 301

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWI-RFKWYFA 693
             I  + P        I G   +  +            V  + + ++IY+++  F+    
Sbjct: 302 AAIDRLQPQLPEGMEIIRGSDDTVFIKESIKEVWRTFAVAATLVVLVIYLFLGSFRAAIV 361

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             A+  + +    T    A  G   N+  + A++  IG  V+D +VV + +    +    
Sbjct: 362 PAAVVPVCM--VGTFAILAAGGFSINILTLLALVLAIGLVVDDSIVVLENI---QRRVDL 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
                   ++   +     + T+       +P+    G +   FA  +A  I  A   S 
Sbjct: 417 GEPPMLASERGGRQVFFAVIATTATLVAVFMPLIFLPGLIGRIFA-ELAVTITGAVVLSS 475

Query: 814 FIAAPILLFIYDWRAKNA 831
           F+A  +   +     K +
Sbjct: 476 FVALTLSPMMTSKLLKPS 493



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 78/222 (35%), Gaps = 17/222 (7%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV--GVIISA 677
            R             + + V+            +       ++   L     +     ++ 
Sbjct: 803  RAVTVSATIQGDYTIGQAVEWLDQWAADTLPPEVGTTYVGEVREFLRSNNAIYFAFGLAL 862

Query: 678  IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVN 735
            + + + +  +F+  F   A+  L + +    G F L+  G   N+ +   ++ LIG +  
Sbjct: 863  LIVFLVLAAQFE-SFIQPAVIMLTVPLAVAGGLFGLYMGGSSLNIFSQIGLIILIGLAAK 921

Query: 736  DKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            + +++ +   ++R+        +S  +   ++    L   + T ++  I   P+ +    
Sbjct: 922  NGILIVEFANQLREE------GLSLAEATLEASVTRLRPILMTGVSTAIGAFPLVIATGP 975

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G     +  + +  G++VA   ++F+   +   +  +     
Sbjct: 976  GSETRVTIGLVIFTGVMVATLFTLFVVPAVYGVLGRYTKTPN 1017


>gi|313637723|gb|EFS03090.1| protein-export membrane protein SecF [Listeria seeligeri FSL
           S4-171]
          Length = 267

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 120/253 (47%), Gaps = 9/253 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            + A++ +  + ++ +L  + +          +    V             +     +  
Sbjct: 2   EISADKTLTETQIKKDLNDIGMPSDDIVFQGADSKTAVVSYKGTLSQDDVAKFKSYFE-- 59

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                      +   V P + +EL + G + + +++I +++YI +RF++Y  + AI +L+
Sbjct: 60  ----DKYKHEPSISTVSPTVGKELAKNGFLALGVASILIVLYIAVRFEFYMGIAAILSLL 115

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK---NMKLYTTSISFR 758
            D      FF++  +E +LT +AAVLT+IGYS+ND +V  DR+R     M+ + T     
Sbjct: 116 FDAFVIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRVRDISMKMQRFKTQEEIA 175

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++K++ +T  RS+ T +    +VL + ++G   I +F+I +  G+V +  SSIF+A  
Sbjct: 176 GAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSIFMAMQ 235

Query: 819 ILLFIYDWRAKNA 831
           +       + +  
Sbjct: 236 LWYVFKARQLRKK 248


>gi|239978429|ref|ZP_04700953.1| preprotein translocase subunit SecD [Streptomyces albus J1074]
          Length = 583

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 113/575 (19%), Positives = 220/575 (38%), Gaps = 47/575 (8%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD- 64
             +IL +++   G +    +  P+                LG+DL GG+ + L+   +  
Sbjct: 20  LALILIALVALTGGMFLSGHTTPR----------------LGIDLAGGTSITLQARSEPG 63

Query: 65  ----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
                    +      +   +   G+    ++    + I ++      ++   ++V    
Sbjct: 64  QESAVNQTNMNTAVGIIERRVNGLGVSEAEVQTQGTDHIIVNIPKGTNEKQAREQVGTTA 123

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE-QSMEIIRQRIDQIGISE 178
           Q     +            +    +              A + +S E       Q   + 
Sbjct: 124 QLFFRPVLQLASGEPAPEGSPSPSASGSPDEAEQGDGDKATDGKSGEPEATPTTQGRAAS 183

Query: 179 STIQRLGSHRILIQLPGEQDPS---------RLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
             ++   +        G+ DP+             L+     ++                
Sbjct: 184 GALKADATPSPSASADGKADPTPSPSASEGGADEALMKKFEALTCTDTEERTDAAEGTKP 243

Query: 230 VRF-----LRDSDGNQYLVEDKVEISGIHLNG-ATANFDPKTHKPVVDISFDEMGARRFF 283
                          +  +     ++G  ++    A         +V++ F   G ++F 
Sbjct: 244 SEPIVACGQNSQGQWEKYILGPSAVAGTEIDDATAAIDQQGAQGWLVNMEFTNKGKKQFA 303

Query: 284 EVTRDN-----IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG 338
           +VT D           A+VLDG V++AP + + +  G AQISG+FT E+A  LA ML  G
Sbjct: 304 DVTTDISAKPSPQNQFAIVLDGDVVSAPYVREPLTGGTAQISGSFTQESAQDLANMLSYG 363

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
           +LP+        +V A LG + +  G  A   GL+L++++++V Y    L+A  S+ ++ 
Sbjct: 364 ALPLSFVEESVTSVTAALGGEQLEAGLIAGGIGLILVIVYLVVYYRGLSLIAIISLLMSA 423

Query: 399 ILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
            LT  ++ LLG      L LP++ G ++ IG+  DS I+  ER+R+E R+ +S+  ++  
Sbjct: 424 ALTYTIMVLLGPAIGFALNLPAVCGAIVAIGITADSFIVFFERVRDEIREGRSLQPAVAR 483

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G+ RA  TI  S+  + ++  VLF    G V+GFA T+GL+ L+ +       + ++  +
Sbjct: 484 GWPRARRTILVSDFVSFLSAAVLFVVTVGKVQGFAFTLGLTTLLDVVVVFFFTKPLLTIL 543

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
            R K   S           +     ++  R     
Sbjct: 544 ARKKFFASGHPWSGLDPKRLGVKPPLRRARRTVPA 578



 Score =  112 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 88/266 (33%), Gaps = 11/266 (4%)

Query: 567 HGLNYGIDFKGGIQL-GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
             +N     KG  Q   V  +     S        L    +S                  
Sbjct: 288 WLVNMEFTNKGKKQFADVTTDISAKPSPQNQFAIVLDGDVVSAPYVREPLTGGTAQISGS 347

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               +   +  M+      +      ++   V   +  E +  G++   I  I +++Y+ 
Sbjct: 348 FTQESAQDLANMLSYGALPL--SFVEESVTSVTAALGGEQLEAGLIAGGIGLILVIVYLV 405

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + ++   +L AI +L++    T     L G       NL AV   +  IG + +  +V +
Sbjct: 406 VYYR-GLSLIAIISLLMSAALTYTIMVLLGPAIGFALNLPAVCGAIVAIGITADSFIVFF 464

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      S +  + +         + +   +F+S   + V     +  FA  +
Sbjct: 465 ERVRDEIRE---GRSLQPAVARGWPRARRTILVSDFVSFLSAAVLFVVTVGKVQGFAFTL 521

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWR 827
               ++      F   P+L  +   +
Sbjct: 522 GLTTLLDVVVVFFFTKPLLTILARKK 547


>gi|229591550|ref|YP_002873669.1| multidrug efflux protein [Pseudomonas fluorescens SBW25]
 gi|229363416|emb|CAY50593.1| multidrug efflux protein [Pseudomonas fluorescens SBW25]
          Length = 1044

 Score =  172 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/552 (11%), Positives = 147/552 (26%), Gaps = 34/552 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        Q  L+++P   P                      
Sbjct: 8   RPIFAWVIAIVIMLGGSLSI-----SQLPLEQYPDIAPPTV---------KISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L     +   S       I+L+F      +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDNLTYMSATSSSAGSASISLTFTAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      +++     D       +    I    +D I   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGGSDFLMIVALASDDPSVTGTQIGDYISTTLLDSISRIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+ L +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPALLEKYALMPSDISSALEAQNTEVSAGQLGGLPAVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                      +                 +           
Sbjct: 233 TISARSKL-------------QTVEAFREVVVKSNSDGAVVLLGDVATLELGSESYDIST 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             A  +     +        +                        S 
Sbjct: 280 ALNGKPAAAMGVQLAAGANALNVGKAVKAKLKEMEPFYPTQMQLKNVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                       LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 EEVVKALGEAIVLVVLIMFLFLQSLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IGL VD  I+V E +     +  S   +           +    +      + + F
Sbjct: 400 MVLAIGLLVDDAIVVVENVERLMGEGLSPVAATRQSMREISGALVGITLVLSAVFIPMAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG      R F++T+  ++++S+  A+++  A+   +++ +  +          +    
Sbjct: 460 FGGSTGIIYRQFSVTIVSAMVLSVLVAMTLTPALCASLLKARNGQGHGAQRGFFGWFNRT 519

Query: 537 CIAIQFMRARFW 548
                    R+ 
Sbjct: 520 FERASAGYERWV 531



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/166 (19%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 666 IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           I + +  +  + + +++ +++        L    T+ + +  T G  ALFG   N   + 
Sbjct: 339 IEEVVKALGEAIVLVVLIMFLFLQSLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMF 398

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A++  IG  V+D +VV + +    +L    +S      +S+ E  G  V  ++      +
Sbjct: 399 AMVLAIGLLVDDAIVVVENV---ERLMGEGLSPVAATRQSMREISGALVGITLVLSAVFI 455

Query: 785 PMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           PMA +GGS       F++ +   +V++   ++ +   +   +   R
Sbjct: 456 PMAFFGGSTGIIYRQFSVTIVSAMVLSVLVAMTLTPALCASLLKAR 501



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 75/250 (30%), Gaps = 9/250 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +    +        +   G    + ++G  +  +     PG S            + 
Sbjct: 788  VRNSNNEMVPFSSFANSTWGYGSPLLERYNGNASLEIVGDPAPGVSSGDAMDAVEAIVRQ 847

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                                 +      + V+   + +     +   W      I  + L
Sbjct: 848  LPQGIGYEWTGQSYQLRLSGSQAPLLYGISVLFVFLCLA---ALYESWSVPFSVILVVPL 904

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    + G+  ++     +LT +G +  + +++ +  +    L     S  D   
Sbjct: 905  GVIGAVLATRVAGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK---HLQEQGNSVVDATL 961

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             ++ + L   + TS+A    VLP+A+    G +   +    +  G+  A    IF     
Sbjct: 962  IAVRQRLRPILMTSLAFMFGVLPLALSTGAGSAGRQAIGTGVLGGMFSATVLGIFFVPLF 1021

Query: 820  LLFIYDWRAK 829
             + +     +
Sbjct: 1022 FVLVRRRFGR 1031


>gi|325918758|ref|ZP_08180849.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas vesicatoria ATCC 35937]
 gi|325535028|gb|EGD06933.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas vesicatoria ATCC 35937]
          Length = 1056

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/613 (10%), Positives = 155/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PIFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKAVTQVIEQQLTGIDHLLYFNSSSASNGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D         +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSIDRDALNDIVGSRVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G         
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPQGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPGEFENIILRTDNNGATVRLKDVARVSVGPSNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E  G     L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSEAVGAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   +  +G T+   ++ 
Sbjct: 337 IEEVVHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYAIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A++   A+            +    ++ D   
Sbjct: 457 SLQPGASGAIYKQFALTIAMSMGFSAFLALTFTPALCASFLKATHSDKKNWVYRTFDKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R+  W +   +L  +C        G     + +G     V    
Sbjct: 517 DKLAHRYVGVVGHTLKRSPPWMIVFVVLVVLCGFLFTRMPGSFLPEEDQGFAVAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
                        
Sbjct: 577 GATKIRTNEAFAQ 589



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLMVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         + R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 949  VEQRAA---GKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANSRHSIGTGV 1005

Query: 802  AFGIVVAA-SSSIFIAAPILLFIYDW 826
              G+V A     IFI  P+   +   
Sbjct: 1006 IGGMVFATVLGVIFI--PLFFVVVRR 1029



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 53/148 (35%), Gaps = 9/148 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T       G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYAIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 477

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  +A  ++     +          + +
Sbjct: 478 MGFSAFLALTFTPALCASFLKATHSDKK 505



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 46/527 (8%), Positives = 132/527 (25%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+ PW+++   ++   G L        +      P              +G +  ++++ 
Sbjct: 533  RSPPWMIVFVVLVVLCGFL------FTRMPGSFLPEED-----------QGFAVAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT----------LSFADSRFKENI 111
                          ++R+ L+K+      ++                 +       ++  
Sbjct: 575  PPGATKIRTNEAFAQMRAVLEKQPAVEGMLQIAGFSFLGSGENVGMGFIRLKPWEERDVT 634

Query: 112  ADKVTLFLQGVNSKLNVD----PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A+++   L G    +            +    +     +  Q+          +    ++
Sbjct: 635  AEQLIQQLNGAFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALTQARNIVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +   +             +   +QL    D  + + +    + +               
Sbjct: 695  GKAAQKADTMVGVRPNGLENSPQLQLH--VDRVQAQSMGLEVSDIYSSIQ---------- 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              +  +  +D        +V I                  P    +  +           
Sbjct: 743  LMLAPVYVNDYFSEGRIKRVNIRADDQFRTGPESLRNFFTPSSTATGADGQPGMIPLSNV 802

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                   A     R      +N          SG        I+   L  G       + 
Sbjct: 803  VKAEWTYASPALNRYNGYSAVNIVGNPAPGGSSGQAMTAMEEIVNNDLPPGFGFDWSGMS 862

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
             +  +  +  +  +      +   L  +            +     + + V+  +    L
Sbjct: 863  YQEIIAGNAATLLLALSVVVVFLCLAAL-----YESWSIPVAVLMVVPIGVLGAITFSML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G    L    G++  IGLA  + IL+ E   E+    +++  +        +  I  ++
Sbjct: 918  RGLPNDLYFKIGMITVIGLAAKNAILIVEFAVEQRAAGKTLREATLEAAHLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               ++  + L      G  +       +   ++ +    +  +    
Sbjct: 978  FAFILGVLPLAISTGAGANSRHSIGTGVIGGMVFATVLGVIFIPLFF 1024


>gi|332876756|ref|ZP_08444514.1| RND transporter, HAE1 family [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332685315|gb|EGJ58154.1| RND transporter, HAE1 family [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 1067

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/633 (11%), Positives = 175/633 (27%), Gaps = 46/633 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +       +  +I  +G +      L    ++++P   P                     
Sbjct: 8   KRPVMAFSISILILIVGFIS-----LGTLPIEQYPDIAPPTVC---------VSATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             D V   +    +E  + ++       +     +  I++ F      +  A  V   + 
Sbjct: 54  SADAVMKSVVQPLEEAINGVENMTYMQSTATNSGSADISIYFKQGTDPDMAAVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L V+  +  + TT  +   + +               +  +    + +I   E  
Sbjct: 114 KAQGLLPVEVTQIGVTTTKRQTSFLQIGSLYSPNNRYDKTFIANYLDINVVPRIKRVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +        +     P  + Q       ++      N        G           
Sbjct: 174 GDVMAMGD-TYSMRIWLKPDVMAQYGLVPTDITSALGEQNLESPTGSLGENSTNTFQFTM 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  +IS                +    +                 +          
Sbjct: 233 KYKGRLTDIS----------------QFEDIVVRSLPDGNILRVKDVARVELGTQSYAFD 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +        +    A  +          L + +          +    +      S  
Sbjct: 277 SNVDGHPSCTFMVFQVAGSNATEVNAEISKLLSEINEELPEGLEFMTMMSSNDFLFASIH 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV++V++  +   K  L+   SI ++++ T A + + G ++ + ++  +
Sbjct: 337 EVVETLVIAIILVILVVYFFLQDFKSTLIPSISIIVSLVGTFAAMQIAGFSINILTLFAL 396

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG  VD +I+V E ++ +      S + +     S     +    +  +   + + F
Sbjct: 397 VLVIGTVVDDSIVVVEAVQSKFDVGYTSPYLATKDALSDVTMAVITCTLVFMAVFIPVTF 456

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL-------- 528
            GG +      F +TM +++ IS   A+++  A+    +R    K    +          
Sbjct: 457 MGGTSGIFYTQFGVTMAVAVGISCLNALTLCPALCAMWMRPASGKKGKRSINGIVKAAYN 516

Query: 529 --SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +      + F     W    S++ S   +           +  +    + V  +
Sbjct: 517 ASFNAMMSKYKNGVMFFIHHRWISWGSLVVSCVLLVYFMKTTKTALVPQEDQGTMMVNVS 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
                S+  +N    +I +I  Q  + +    +
Sbjct: 577 MSPGSSLATTNKTMAKIENIIKQIPEVDHYSKI 609



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/364 (11%), Positives = 118/364 (32%), Gaps = 9/364 (2%)

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+ +    L+       + F        ++     +  V  +M     Y     +  + +
Sbjct: 135 TSFLQIGSLYSPNNRYDKTFIANYLDINVVPRIKRVEGVGDVMAMGDTYSMRIWLKPDVM 194

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +++ L+P  I              S+  +  +             D      + V +   
Sbjct: 195 AQYGLVPTDITSALGEQNLESPTGSLGENSTNTFQFTMKYKGRLTDISQFEDIVVRSLPD 254

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            ++  V+              + + + +               T V   + K ++EI   
Sbjct: 255 GNILRVKDVARVELGTQSYAFDSNVDGHPSCTFMVFQVAGSNATEVNAEISKLLSEINEE 314

Query: 649 STIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
                  +     +  L       +  ++I+ I +++ ++     +   L    ++I+ +
Sbjct: 315 LPEGLEFMTMMSSNDFLFASIHEVVETLVIAIILVILVVYFFLQDFKSTLIPSISIIVSL 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T     + G   N+  + A++ +IG  V+D +VV + ++    +  T  S       +
Sbjct: 375 VGTFAAMQIAGFSINILTLFALVLVIGTVVDDSIVVVEAVQSKFDVGYT--SPYLATKDA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +++     +  ++      +P+   GG+       F + MA  + ++  +++ +   +  
Sbjct: 433 LSDVTMAVITCTLVFMAVFIPVTFMGGTSGIFYTQFGVTMAVAVGISCLNALTLCPALCA 492

Query: 822 FIYD 825
               
Sbjct: 493 MWMR 496



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/433 (12%), Positives = 126/433 (29%), Gaps = 20/433 (4%)

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
             +  S  G + G G +  S I+  +   E   K Q    S+    +    +I ++     
Sbjct: 606  YSKISGYGFIAGQGTSYGSFIIRLKDWNERTGKGQDA-TSVMNKLNFMLQSIKEAQSFTF 664

Query: 472  IATVVLFFFGGGAVR-------GFAITMGLSILISMFTAISIVRAMMIFI-----IRYKK 519
               ++  +  G ++        G  +T      +    A++    + +          + 
Sbjct: 665  QPGMIPGYGMGNSIELQLQDRVGGDLTSFYQNTMKFIGALNQRPEVAMAYTTFNPNFPQY 724

Query: 520  MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
               ID     R  + P  +              +         ++      Y +D K   
Sbjct: 725  AIDIDAAKCKRAGISPSEVLSVLGGYCGGIYASNFNLFSKVYRIMIQADPKYRLDEKSLN 784

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             + V  N  +       +++     +++ +    +             S    + +E V 
Sbjct: 785  NIFVRVNGEMAPISQFLSVKKTMGPEVTNRFNLFDAIACNVNPAPGYSSGQTMQAIEEVF 844

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +                  + +       I    I  I  LI   +   +   +  I +
Sbjct: 845  AQTMPNRYNYEYGGISREEKETAGSNDTVFIYVFCIVLIF-LILSCLYESFLVPMAVILS 903

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +   +  +  F  LFG+E N+     V+ LIG      +++ +   +        +   +
Sbjct: 904  VPCGLMGSFLFAWLFGLENNIYLQTGVIMLIGLLAKTAILITEYATE---RRRKGMGIIE 960

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +        + T +     +LP+      G +   S    +  G+++   + +FI 
Sbjct: 961  AAYSAAQVRFRPILMTVLTMIFGMLPLMFATGAGANGNSSLGTGVVGGMLIGTLALLFIT 1020

Query: 817  APILLFIYDWRAK 829
                +     + K
Sbjct: 1021 PVFFIVFQYLQEK 1033


>gi|313618801|gb|EFR90696.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           innocua FSL S4-378]
          Length = 292

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 134/279 (48%), Gaps = 9/279 (3%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+++ +            
Sbjct: 1   IVIVGIVILSIFKLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSNDIVFQGSGS 60

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V             +  +  +             +   V P + +EL + G   + +
Sbjct: 61  KTAVVSYKGTLSQNDVAKFKDYFE------DKYKHEPSISTVSPTVGKELAKNGFWALGV 114

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           +++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS+N
Sbjct: 115 ASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSIN 174

Query: 736 DKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           D +V  DR+R     M+ + T     D ++K++ +T  RS+ T +    +VL + ++G  
Sbjct: 175 DTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSE 234

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 235 SILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 273


>gi|284052844|ref|ZP_06383054.1| acriflavin resistance protein [Arthrospira platensis str. Paraca]
 gi|291569778|dbj|BAI92050.1| acriflavin resistance protein family protein [Arthrospira platensis
           NIES-39]
          Length = 1052

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/665 (11%), Positives = 180/665 (27%), Gaps = 31/665 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ ++  +GL+        Q  +D  P+                  +     
Sbjct: 14  RQPVPTLVLFLILTLVGLMS-----FFQLGIDDTPNIDIPAVT---------VTVTQPGA 59

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + L        ++R   +  T+SF      +   + V   +  
Sbjct: 60  GPNELENQVTKQVEDAIAGLGNIDQLTSTVRDGVSTTTVSFVLGTDSDRATNDVRNAIAQ 119

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    ++        SI+              E S  + R     +       
Sbjct: 120 IRQSLPQDINDPIVQRLRFAGGSIMTYAVTSP--TRSVEELSDLVDRTISRALLNVPGVA 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++  E  P R++ L  TT +++      N +  G                
Sbjct: 178 QIQRLGGVDREIRVELHPDRIQSLGITTTQVNDQIRAFNINLPGGRS----------QVG 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E  +   G           P        +    +G           + K     L+  
Sbjct: 228 GSEKSIRTLGSAQTVEALRDYPIILPNGNSVPLSSIGTVTDGLAEVRQVAKFADFPLESN 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +     +        L+          +      +   S   
Sbjct: 288 SEIGTPVVGFSVLRSTGSTLVSVEQGIRERVVDLQKTLPEDINLELIVTRANSIRESYQA 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I + L ++V+ + +   +  L+   ++ L+++ T  ++ +   TL   ++  + 
Sbjct: 348 SVDALVIGSILTVVVVGVFLRNWRPTLITAIALPLSILPTFLVMRMFDYTLNGMTLLALA 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I + E I +     +  F +           +  +  T +   + + F G
Sbjct: 408 LAMGNLVDDAICMMENIDQHVEMGKPPFKAAIDASREIGLAVVATTATIVAVFLPVAFMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFFLIPDC 537
              G   + F +T+  S + S   A ++   +    + +       D N   R F     
Sbjct: 468 GVPGQFFQPFGVTVATSTMFSTLVACTMTPLLGARLLKQKSTPPKTDTNHTRRRFSPYRS 527

Query: 538 IAIQFMRARFWG-VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
           +    +R R    +     F      +       +     G   + +       L+ + +
Sbjct: 528 LLAWSLRHRITTLLLAIAFFIASLQLVPLIPKGLFSSGDTGLSTISLQLPPGSTLAELET 587

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +            D     L        +    T  + +V     EI           
Sbjct: 588 TTQEAIAHLAENPAVDNVLAVLGNRGEGVVEVNQATLSVNLVPSDDREISQAEFETQMRT 647

Query: 657 VGPKI 661
              +I
Sbjct: 648 RFAQI 652



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 74/234 (31%), Gaps = 8/234 (3%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ VR   +       S             L+      V+  + +      + + +P   
Sbjct: 270 LAEVRQVAKFADFPLESNSEIGTPVVGFSVLRSTGSTLVSVEQGIRERVVDLQKTLPEDI 329

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
                +      RE  +  +  ++I +I  ++ + +  + W   L     L L I  T  
Sbjct: 330 NLELIVTRANSIRESYQASVDALVIGSILTVVVVGVFLRNWRPTLITAIALPLSILPTFL 389

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              +F    N   + A+   +G  V+D + + + +    +              +  E  
Sbjct: 390 VMRMFDYTLNGMTLLALALAMGNLVDDAICMMENI---DQHVEMGKPPFKAAIDASREIG 446

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
              V T+       LP+A  GG        F + +A   + +   +     P+L
Sbjct: 447 LAVVATTATIVAVFLPVAFMGGVPGQFFQPFGVTVATSTMFSTLVA-CTMTPLL 499



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 67/170 (39%), Gaps = 7/170 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGF 710
            Q       +I  ++  + +  + ++ + +  I + +   +   +  +  L L +   L  
Sbjct: 847  QQQSEGDARIMIDVFTRFLSALALAVLGIYAILVLLYNNFIIPVTILMALPLSLGGALLA 906

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              +   E  L A+  ++ L+G    + +++ D    +M      +S  + + ++    L 
Sbjct: 907  LMVTQKELGLFALIGIVLLMGLVTKNAILLVDC---SMANQQMGMSRFNAVLEAGCSRLR 963

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
              + T+ +    +LP+A+    G  V    AI +  G+  +   ++ +  
Sbjct: 964  PILMTTFSTIAGMLPIALEWGAGSQVRSPMAIAVIGGMTTSTLLTLVVVP 1013


>gi|56461404|ref|YP_156685.1| RND family efflux transporter [Idiomarina loihiensis L2TR]
 gi|56180414|gb|AAV83136.1| RND family efflux transporter [Idiomarina loihiensis L2TR]
          Length = 1032

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/633 (11%), Positives = 189/633 (29%), Gaps = 51/633 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G++           L  +P                   + ++ D
Sbjct: 9   KRPVFATVLNILLVVFGIVA-----FTMLPLREYPDIDRPI-------------VTIDTD 50

Query: 62  ED----DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 + V   +    ++  S ++       S R  ++ I++ F  +R  +  ++ V  
Sbjct: 51  YPGASAEVVETQVTQLVEDRISGIEGIKNISSSSRNGRSSISIEFNLTRDIDAASNDVRE 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V   L  +     +   +  E +IV      +      +E +    R  +D++ ++
Sbjct: 111 RVSRVLDNLPEEADPPEVSKASSDESTIVWYNLRSES--MSILELTDYAERYIVDRLSVA 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   + +        +    D   +     T   +                         
Sbjct: 169 DGVARVVIGGDRRYAMRVWLDRDAMAARQVTVTDIVSRLREE------------------ 210

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N  L   +VE +    +   A            +                 +       
Sbjct: 211 -NVELPAGEVESTDREFSVRMARAYLSPEDFKNLVIRQGDDGYLVRLGEVARVELGAEDD 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +       +++ +    ++        ++              +     G
Sbjct: 270 KTDFRGNGVNMVGVGVIKQSKGNTLDVVKNVHREMKKIQETLPETMYLAPSYDSSIFIQG 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A+   LV++V+++ +   +  +V   ++ + +I +  +L  LG ++ L ++
Sbjct: 330 SVDEVYNTLAVAMALVIVVIYLFLGNIRATIVPALTVPVAIIASYMVLFALGFSINLLTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD +I+V E I     + +    +   G       +  + +  +   V L
Sbjct: 390 LALVLAIGLVVDDSIVVLENIYRRIEEGEPPVLAAYRGAREVGFAVIATTLVLISVFVPL 449

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-----KSIDINPLS 529
            F  G   +    FA+ +  ++  S   A+++   +   I+  K+      K+ D     
Sbjct: 450 AFLDGNIGKLFTEFALAIAAAVAFSSIAALTLTPMLSSKILSKKERTSKFGKAFDATFNW 509

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R     V + +   +      F        + +G   + V +    
Sbjct: 510 LEQGYRGVLEKSVKRPMMAIVLVVMSGVVAFGLFSFIPQEFAPPEDRGTFYIQVRSAEGA 569

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                  +++ ++   + + +       +VR  
Sbjct: 570 SFESSSRHMDEIEQILLPYIDEGKIDRLIVRAP 602



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 67/156 (42%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ +   + +  +F+ +   L  +  + + I   L    L G+  N+ +   ++ LIG 
Sbjct: 856  GLALVITFLVLAAQFESFIHPLVIMLAVPMAIVGALMALYLAGMSINIYSQIGIVMLIGL 915

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +      +L  + + F++ + K+  + L   V T+    +S +P+ +    
Sbjct: 916  AAKNGILIVEFAN---QLRDSGVEFKEAVLKAAQQRLRPIVMTAFTTLMSSVPLILGSGP 972

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G          +  G+ V+A  ++F+   + + +  
Sbjct: 973  GAESRMVIGTVIFAGVAVSAFLTLFVIPALYIALAK 1008



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 77/259 (29%), Gaps = 9/259 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R R   V +       +            +  +    L +       L  +         
Sbjct: 206 RLREENVELPAGEVESTDREFSVRMARAYLSPEDFKNLVIRQGDDGYLVRLGEVARVELG 265

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            +    +F G    +V +            V++ V +++ +I                S 
Sbjct: 266 AEDDKTDFRGNGVNMVGVGVIKQSKGNTLDVVKNVHREMKKIQETLPETMYLAPSYDSSI 325

Query: 664 ELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
            +          + V ++ + ++IY+         +    T+ + I  +       G   
Sbjct: 326 FIQGSVDEVYNTLAVAMALVIVVIYL-FLGNIRATIVPALTVPVAIIASYMVLFALGFSI 384

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           NL  + A++  IG  V+D +VV + +    +             +   E     + T++ 
Sbjct: 385 NLLTLLALVLAIGLVVDDSIVVLENI---YRRIEEGEPPVLAAYRGAREVGFAVIATTLV 441

Query: 779 AFISVLPMAVWGGSVIGSF 797
                +P+A   G++   F
Sbjct: 442 LISVFVPLAFLDGNIGKLF 460


>gi|209966503|ref|YP_002299418.1| AcrB [Rhodospirillum centenum SW]
 gi|209959969|gb|ACJ00606.1| AcrB [Rhodospirillum centenum SW]
          Length = 1052

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/651 (11%), Positives = 186/651 (28%), Gaps = 44/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L +++   GLL           +   P   P                     
Sbjct: 9   QRPVLAFVLSAVLVVFGLL-----GYDSLPVRELPRIDPPIV---------SIDTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    + + + ++         R+  + +++ F  +R  +  A+ V   +  
Sbjct: 55  SAEVVDNEITERIESVVNGIEGIRTIRSRSREGNSSVSIEFELTRDIDGAANDVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +     +         I+      D    + +E +  + R  +D +       
Sbjct: 115 VVDNLPEEADPPEVTKVDSDSQPIMWITLTSD--RMNQLELTDYVRRYYLDTLNTVPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S R    +    D   +     T   +       N               +     
Sbjct: 173 SIRISGRRDFAMRVWLDRDAMAARGVTVRDVETAIRRENTELPAGRIESSQREFTVRTDT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    + + I +                       GA          +           
Sbjct: 233 RLSTPGQFAAIVVRQ--------------------DGANLVRIGDVARVEVGPRDDRGDF 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            ++  +     +    +    RA   P     V + +      S   
Sbjct: 273 RLNGIQAVGMGIQRQSTANTVEVSQAVHAVLNQFRASLPPGMTLEVRQDDAVFINQSIYE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   LV++V+++ +   +  ++   +I ++++    +L+LLG ++ + ++   V
Sbjct: 333 VFHAIGVAILLVVLVVWVFLRTVRATVIPVVAIPVSLVAAFGVLALLGYSINVLTLLAFV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +GL VD  I+V E       + +    +   G  +    +  + +  L     L    
Sbjct: 393 LAVGLVVDDAIIVVENAARRIEEGEPPLLASFRGARQIGFAVIATTLVLLAVIFPLTMLD 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  +R FA+ +  ++  S   A+++   +   ++R     +       + F     +
Sbjct: 453 NEQGRLLREFAVALMAAVGFSCAVALTLSPMLCSKLLRVHDEGNRFFTATEKVFTGMADL 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLN-----YGIDFKGGIQLGVLANRPVDLSV 593
             + +RA      + +     ++  L     +        + +G  ++ V       L  
Sbjct: 513 YGRALRAALGAPVVVLTLFAATVGGLVVTYQSLESELAPQEDRGVFRISVQTPEGATLDF 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               +++++     +       + L  L    G +     +L +      E
Sbjct: 573 TDREVKAVEGLLEPYLANGDVNSILTILAPGWGGAGVNRAMLVVRTPPWDE 623



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 64/158 (40%), Gaps = 8/158 (5%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
                 ++ +   + +  +F+ +   L  I  + L +   +   A+ G+  N+     ++ 
Sbjct: 857  FFAFGMALLVAFLVLAAQFENFRMPLIIILAVPLALFGGVLAMAVTGMTDNIYTQIGLIL 916

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G    + +++ +      +L    +  R+ + ++    L   + TS+A     LP+A+
Sbjct: 917  LVGLICKNAILIVEFAN---QLRDEGLVMREAVIEASKLRLRPILMTSIATVFGALPLAL 973

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                G     +    +  G+ +    S+F+  P+L  +
Sbjct: 974  AEGAGAESRMAIGWVIVGGVTIGTLLSLFV-TPLLYNL 1010



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +  +  + + +    G  AL G   N+  + A +  +G  V+D ++V +      +
Sbjct: 355 VRATVIPVVAIPVSLVAAFGVLALLGYSINVLTLLAFVLAVGLVVDDAIIVVENA---AR 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                        +   +     + T++     + P+ +     G ++  FA+ +   + 
Sbjct: 412 RIEEGEPPLLASFRGARQIGFAVIATTLVLLAVIFPLTMLDNEQGRLLREFAVALMAAVG 471

Query: 807 VAASSSIFIAAPI 819
            + + ++ ++  +
Sbjct: 472 FSCAVALTLSPML 484


>gi|58697092|ref|ZP_00372538.1| protein-export membrane protein SecF [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698733|ref|ZP_00373619.1| protein-export membrane protein SecF [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|225630054|ref|YP_002726845.1| protein-export membrane protein SecF [Wolbachia sp. wRi]
 gi|58534752|gb|EAL58865.1| protein-export membrane protein SecF [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58536624|gb|EAL59945.1| protein-export membrane protein SecF [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|225592035|gb|ACN95054.1| protein-export membrane protein SecF [Wolbachia sp. wRi]
          Length = 292

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 94/291 (32%), Positives = 167/291 (57%), Gaps = 10/291 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIPD + I+F + R     +SI+  I S+ ++   G+N GIDF GGI + + +      
Sbjct: 4   RLIPDNLNIKFSKYRNLTALVSIILIIFSMLIVVLRGVNLGIDFAGGILIEIKS-----S 58

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
               S L++L+    + Q+     N ++R +    D   + ++ ++      ++    + 
Sbjct: 59  DENHSILDALKENGFTVQSSKAGDNLVMRFK----DEGDEDKIKKIKSILEEKLGSSISY 114

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  + VGP+IS   I +G++ ++I+ + +  Y+W RF W      IT LI D+  T+GF 
Sbjct: 115 RKIDYVGPQISSTQIFEGMLSMLIAIVGIFFYVWFRFNWQCGFSGITALIHDVILTVGFI 174

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L GIEFN+++VAA+LT+IGYS+N+ V++YDR+R+  K   +     +++D SIN TL R
Sbjct: 175 SLTGIEFNISSVAALLTVIGYSINNSVIIYDRIREYCKSGKSGR-MSEIVDASINATLFR 233

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++ TS    ++ LP+A+     +  F++ + FGI++   S+IFI+APIL +
Sbjct: 234 TILTSGTTLLAALPLALICTDAVKDFSLIIFFGILIGTCSAIFISAPILTY 284


>gi|326388448|ref|ZP_08210044.1| multidrug efflux protein, RND family [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207180|gb|EGD58001.1| multidrug efflux protein, RND family [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 1067

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/676 (11%), Positives = 181/676 (26%), Gaps = 40/676 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+   +     +  + ++P   P                      
Sbjct: 10  RPIFAWVIAIVIMMAGIGSIM-----RLPVAQYPDVAPPAV---------DVRATYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + +        +        IT++FA     +    +V   +Q 
Sbjct: 56  AETLETSVTQVIEQQLTGIDNMIYFSSTSDSSGTATITVTFAKGTDPDVAQVQVQNKVQQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  L  T      +++         + + + +  ++    D I       
Sbjct: 116 ATSRLPTEVQQQGLTVTKSNSDFLMIVGMYDKSDRTTSSDVADYLVSNYQDDIARLNGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L       + +       N        G            
Sbjct: 176 QVQVFGS-EYAMRVWMDPVKLASRQLMPSDLETAIRAQNIDLSSGQIGALPALKGQMLNA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +V+ K  +                 +    +                 +           
Sbjct: 235 VVKAKARL-------------QTPEQFRNIVVKTMPDGSVVHLSDVARVELGQQDYSMDA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                                 T          L                      S   
Sbjct: 282 RFNGHPAAGMAIQLAPGADALKTTAAVKAEVTKLSGSLPHGYAVSYPRDTSDFVKLSIRE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+IV+F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  +V
Sbjct: 342 VIETLLIAVVLVVIVMFIFLQSWRATLIPAIAVPVVLLGTFGVLALFGYSINTLTLFAMV 401

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +      +         + +    +      + + FF
Sbjct: 402 LAIGLLVDDAIVVVENVERVMAEEGLDPAAATIKSMGEIGTALVGIALVLSAVMLPMAFF 461

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F++T+  ++ +S+  A+ +  A+   +++      +    L   F     
Sbjct: 462 GGSTGVIYRQFSVTIVAAMALSVIVALVLSPALCATLLKEGHHDPLTRGGLFGKFNRWFD 521

Query: 538 IAIQFMR-------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              +           R     +        I  LF       +  +   ++ V+   P  
Sbjct: 522 RLTRSYVSATGQVIHRRGAHLVVYAVIAAGIVWLFMRLPTGFLPTEDQGEVMVMFTLPAG 581

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +  R+   S ++  +  +    +   L  +         Q   +        +  P + 
Sbjct: 582 ATQERTLAISKEVEHVFLEQEKKDIKGLFTVTGFSFSGSGQNAGMGFASLAPFDDRPGAA 641

Query: 651 IQNTEIVGPKISRELI 666
                I G  +   L 
Sbjct: 642 HAAGAINGRAMGSFLK 657



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 94/248 (37%), Gaps = 6/248 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +     V LS V       Q   +  +        +        D++  T  ++    K
Sbjct: 255 TMPDGSVVHLSDVARVELGQQDYSMDARFNGHPAAGMAIQLAPGADALKTTAAVKAEVTK 314

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           ++  +P     +         +  IR+ I  ++I+ + ++I ++I    W   L     +
Sbjct: 315 LSGSLPHGYAVSYPRDTSDFVKLSIREVIETLLIAVVLVVIVMFIFLQSWRATLIPAIAV 374

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T G  ALFG   N   + A++  IG  V+D +VV + +     +    +     
Sbjct: 375 PVVLLGTFGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERVMAEEGLDPAAA 432

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             KS+ E     V  ++     +LPMA +GGS       F++ +   + ++   ++ ++ 
Sbjct: 433 TIKSMGEIGTALVGIALVLSAVMLPMAFFGGSTGVIYRQFSVTIVAAMALSVIVALVLSP 492

Query: 818 PILLFIYD 825
            +   +  
Sbjct: 493 ALCATLLK 500



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 80/225 (35%), Gaps = 9/225 (4%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
             F+G  ++ +     PG S        +  ++                  + S + +   
Sbjct: 841  RFNGSSSYEINGNAAPGYSSGDAMNEMIALQQKLAPGTGYAWSELSYQENQSSGQAVYLY 900

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             + +++  + +     +   W      +  + L +   +    L G+E N+     +LT 
Sbjct: 901  ALSILVVFLCLA---ALYESWSVPFAVMMVIPLGVLGAVLGVTLRGLENNIYFQVGLLTT 957

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG +  + +++ +   +  +      S R+   ++    L   + TS+A    VLP+AV 
Sbjct: 958  IGLAAKNAILIVE-FAEAAR--RNGRSMREAALEAAQVRLRPILMTSIAFIAGVLPLAVA 1014

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    +  G++ A + +IF      + I     + A
Sbjct: 1015 TGAGAQSRIAIGTAVLGGMITATALAIFYVPMFFIVIGQLFHRKA 1059


>gi|313623667|gb|EFR93822.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           innocua FSL J1-023]
          Length = 292

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/279 (25%), Positives = 134/279 (48%), Gaps = 9/279 (3%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             I  I +L    LN GIDF  G +  V AN+ +  + ++ +L+++ +            
Sbjct: 1   IVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDAIDMPSNDIVFQGSGS 60

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V             +  +  +             +   V P + +EL + G   + +
Sbjct: 61  KTAVVSYKGTLSQNDVAKFKDYFE------DKYKHEPSISTVSPTVGKELAKNGFWALGV 114

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           +++ +++YI +RF++Y  + AI +L+ D      FF++  +E +LT +AAVLT+IGYS+N
Sbjct: 115 ASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFIAAVLTVIGYSIN 174

Query: 736 DKVVVYDRMRK---NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           D +V  DR+R     M+ + T     D ++K++ +T  RS+ T +    +VL + ++G  
Sbjct: 175 DTIVTADRIRDISMKMQRFKTKEEIADAVNKALRQTFTRSINTILTVIFTVLALVLFGSE 234

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            I +F+I +  G+V +  SSIF+A  +       + +  
Sbjct: 235 SILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKK 273


>gi|332702361|ref|ZP_08422449.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552510|gb|EGJ49554.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 1049

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/687 (12%), Positives = 181/687 (26%), Gaps = 44/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +           +DR+P   P               + +    
Sbjct: 9   RPVFACVLSILILLAGSVAIFV-----LPIDRYPQITPPT-------------IQISATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                    +  +  +   L                   KI  +F     ++  A +V  
Sbjct: 51  PGADAQTAAESVAAPIEQQLSGVKHLLYFSSLCSNNGSVKIVATFEIGTDQDMAAVEVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L  +  +  +  T      + +            I  S       +D +   
Sbjct: 111 RLSIAEPRLPSEVVRQGITVTKSSTSMLGVVSLES-DGRYDDIFLSNYATINLLDSLKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +L     T ++++      N        G R      
Sbjct: 170 PGVGDVAVFGTKDYSMRVWVNPDQLAMRGLTVSEVAEAIREQNAVFPAGTIGQRPTAGEI 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +              +  +    I                 +       
Sbjct: 230 ELTVPVLTRGRL-------------QEISEYENIILRANPDGSTLRLKDVARVEMGAQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +            +   +   T+           A   P     +          
Sbjct: 277 DLFGRVQGKPTTLMPVYLQVGANALDTVVGVEKALKQASASFPPGVSYRMPYDTTTFIQD 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T     GLVL+V+F+ +   +  L+   ++ + +I T A +  LG ++   ++
Sbjct: 337 SMSEVVSTLLEAVGLVLVVVFLFLQSWRATLIPLLAVPVAIIGTFAGMLALGFSINTLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +         S   +      +    +    +      V 
Sbjct: 397 FGLVLAIGIVVDDAIIVVENVERLMEHEGLSPRDATIKAMEQVTGPVIAVVLVLSAVFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSR 530
           + F G   G   + FA+T+ +S+ IS   A+++  A+   I+R    K          + 
Sbjct: 457 VTFLGGLTGQLYKQFAVTIAVSVAISGLVALTLSPALCRLILRPTHGKKFVLFRWFNSAF 516

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +     A      RF  V ++I   +C         +  G          +      D
Sbjct: 517 DAMTSGYTAGVRQAIRFVPVSLAIFGLLCYAAYSLQQRVPTGFLPDEDQGFVMAFVVLPD 576

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + +       +  +  F N    +N +V            +     +  K+        
Sbjct: 577 GASLDRTDALTRAAEEFFLNHPAVENTVVLGGLDFLSGGITSTSASSMFVKLKPFEQRQG 636

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISA 677
              +       +         G++++ 
Sbjct: 637 PGMSAQAVAGAAYMNFAGRGDGMVLAF 663



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/215 (11%), Positives = 72/215 (33%), Gaps = 7/215 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              F              +     + KK+                     +   +  + + 
Sbjct: 816  NGFPSIQISGAPAPGVSSGESLDLIKKLAAETLPQGYGFEWSGASYQEVKAGNQAPMVLA 875

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               + + + +  +++ W   +  +  L + +   L    + G+  ++     +LTL+G S
Sbjct: 876  FGIVVVFLVLAAQYEKWSLPIAVLGALPIAVLGALVAVWMRGLAQDIYFQIGLLTLVGLS 935

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ +     +  +   +   +   ++        + TS+A  + V+P+A+    G
Sbjct: 936  AKNAILIVEFC---VSAHREGMGVVESALEAARLRFRPIIMTSLAFILGVVPLAISTGAG 992

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +   S    +  G++ A   +IF      + I  
Sbjct: 993  SAARHSIGTGVIGGMIAATFLAIFFVPLFFVLIQK 1027



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 53/134 (39%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + I  T       G   N   +  ++  IG  V+D ++V + +    
Sbjct: 362 SWRATLIPLLAVPVAIIGTFAGMLALGFSINTLTMFGLVLAIGIVVDDAIIVVENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S RD   K++ +  G  +   +      +P+   G   G +   FA+ +A  +
Sbjct: 420 LMEHEGLSPRDATIKAMEQVTGPVIAVVLVLSAVFVPVTFLGGLTGQLYKQFAVTIAVSV 479

Query: 806 VVAASSSIFIAAPI 819
            ++   ++ ++  +
Sbjct: 480 AISGLVALTLSPAL 493


>gi|325265633|ref|ZP_08132323.1| RND superfamily drug:proton (H+) antiporter [Kingella denitrificans
           ATCC 33394]
 gi|324982903|gb|EGC18525.1| RND superfamily drug:proton (H+) antiporter [Kingella denitrificans
           ATCC 33394]
          Length = 1056

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/634 (11%), Positives = 173/634 (27%), Gaps = 50/634 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++   I   G++      + +  + ++PS                  + L    
Sbjct: 8   RPIFALVISIFIMIAGVM-----GIRKLPISQYPSVAAPT-------------ITLTAAY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++     +       ++    +   +       +TL+F     ++     V  
Sbjct: 50  PGASAQVMEDSVLAVIERNMYGVEGLDYMSTSASSNGSGSVTLTFTPDTDEDLAQMNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V ++L    + N +  +  +   +++   + D     A E      R  + ++   
Sbjct: 110 KLSEVTAQLPSVVQTNGITVSKARSNFLMIVFLDSD--TKSAEELKDYAQRNIVPELQRV 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L+    + + +S      N        G        
Sbjct: 168 DGVGNVRLFGSQR-AMRIWVDPVKLKNYNLSFSDISTAIRAQNAQLSVGALGNTPNVKGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  + ++                 +               +      I       
Sbjct: 227 QITATVSAEGQL-------------KTPEEFGNIFLKQNTNGANVYLKDVAEIKLGSQDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          S     +            A L+                     
Sbjct: 274 SSSSFLNGKEAAGMAVSLSNTGNALQAASDVKAKMAELQKYFPAGVTWSSPYDTSTFVDL 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   ++ L+    + ++++   A +S LG ++ + ++
Sbjct: 334 SIKKVISTLGEAIVLVFIVMFLFLQNFRYTLIPTIVVPVSLLGAFAAISYLGMSINVMTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM----GFSRAYSTIFDSNITALIA 473
             +VL IG+ VD  I+V E +     +      +         S A   I    I+  + 
Sbjct: 394 FAMVLVIGIVVDDAIVVVEAVERIMAEEGLPPKAATRKAMSQISGAIVGITAVLISVFVP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDIN 526
             +L    G   R F++TM  +I  S F A+++  A+   +++                 
Sbjct: 454 LSMLSGASGNIYRQFSLTMVFAIGFSAFLALTLTPALCATMLKPIPKGHNHTKGGFFGWF 513

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +                R   V   I   I ++ ++    L             + + 
Sbjct: 514 NRTFNTGTRKYSGWIAAVLRKSFVTFVIYLGIMAVAVVMIKKLPTSFLPGEDQGFIMTSL 573

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
           +    +      ++L       +N    K+ +  
Sbjct: 574 QLPTGATQERTEKALNTLVGVAKNMPEVKDVITV 607



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/236 (13%), Positives = 88/236 (37%), Gaps = 6/236 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       Q    S      E   +       G+++     ++    ++ +  P
Sbjct: 257 NVYLKDVAEIKLGSQDYSSSSFLNGKEAAGMAVSLSNTGNALQAASDVKAKMAELQKYFP 316

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                ++           I+K I  +  + + + I +++  + + + L     + + +  
Sbjct: 317 AGVTWSSPYDTSTFVDLSIKKVISTLGEAIVLVFIVMFLFLQNFRYTLIPTIVVPVSLLG 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                +  G+  N+  + A++ +IG  V+D +VV + +     +    +  +    K+++
Sbjct: 377 AFAAISYLGMSINVMTMFAMVLVIGIVVDDAIVVVEAV--ERIMAEEGLPPKAATRKAMS 434

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +  G  V  +       +P+++  G+       F++ M F I  +A  ++ +   +
Sbjct: 435 QISGAIVGITAVLISVFVPLSMLSGASGNIYRQFSLTMVFAIGFSAFLALTLTPAL 490



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L I        +     +      ++T++G S  + +++ +  +   
Sbjct: 892  SWSIPMAVIMVVPLGILGVATGAVIRQYSMDTYFTVGMITVMGLSAKNAILIIEYAK--- 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGI 805
             L  +  S  D + ++        + TS A  + V+P+ +  G+      +    + +G+
Sbjct: 949  LLQDSGKSVGDAVLRAAKLRFRPILMTSFAFILGVVPLYIASGASSASQRAIGTAVFWGM 1008

Query: 806  VVAASSSIFIAAPILLFIYD 825
            ++    S+F      L +  
Sbjct: 1009 LIGTFLSVFFVPVFYLIVRK 1028


>gi|253563997|ref|ZP_04841454.1| multidrug efflux membrane fusion protein [Bacteroides sp. 3_2_5]
 gi|251947773|gb|EES88055.1| multidrug efflux membrane fusion protein [Bacteroides sp. 3_2_5]
          Length = 1011

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/687 (12%), Positives = 187/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   GL+           +  +PS                        
Sbjct: 9   RRPVLSTVLTIIILLFGLI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLDPIKMSGYGITPIDVKNAVDKENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E   R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLIVKEENDRIIRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S S 
Sbjct: 273 KMNGVPMVGIVVIPQPGANHIKIADAVYERMEKMQKDLPEDVKYSYGFDNTKFIRASISE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+I++F+ +   +  LV    I +++I    ++ L   ++ + S+  +V
Sbjct: 333 VKETVYVAFILVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLADFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFME 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLI 534
           G      R F+I +  S++IS F A++    +   ++  ++ ++               +
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLVKREKQNWFYLKTEPFFEGMNRL 512

Query: 535 PDCIAIQFMRARFWGVGISILFS-ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  F+  R+  +    +   I +    +       ++ +  I +       V    
Sbjct: 513 YSRSLAVFLHKRWIALPFVAITIGIIAFLWNYIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S              G  N  + L+        Q  V E +   + +
Sbjct: 573 IRDYTEDINDLVDSIIPDAESVTARVSSGSGNVRITLKDMKDRDYTQMDVAEKLSAAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 78/198 (39%), Gaps = 7/198 (3%)

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
              KI +     T +       K  RE     +   I++ + + + +  +F+ +   L  +
Sbjct: 815  MDKIAKETLDDTFRTALTGDSKEYRESSSSLMFAFILAIVLIYLILAAQFESFKDPLIIM 874

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             T+ L I   L F    GI  N+ +   ++ LIG    + +++ +    N+K   T    
Sbjct: 875  LTVPLAIAGALVFMYFGGITMNIFSQIGIIMLIGLVAKNGILIVE--FANLKQ-ETGEDK 931

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIF 814
               I  +  + L   + TS +  + ++P+A   G            +  G++V+   +++
Sbjct: 932  MTAIKDAALQRLRPILMTSASTILGLIPLAFASGEGCNQRIAMGTAVVGGMLVSTLLTMY 991

Query: 815  IAAPILLFIYDWRAKNAR 832
            I   I  +I   R+   +
Sbjct: 992  IVPAIYSYISTNRSNKLK 1009



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        L     N+ ++ AV+  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLVPCIVIPVSLIGAFFVMYLADFSINVLSMLAVVLAVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +  ++   +   E     + T++       P+    G        F+I ++  
Sbjct: 410 YVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMEGMTGRLFREFSIVISGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   R K  
Sbjct: 470 VIISSFAALTFTPMLATKLLVKREKQN 496


>gi|190893174|ref|YP_001979716.1| multidrug-efflux system, acriflavin resistance protein [Rhizobium
           etli CIAT 652]
 gi|190698453|gb|ACE92538.1| multidrug-efflux system, acriflavin resistance protein [Rhizobium
           etli CIAT 652]
          Length = 1075

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/544 (11%), Positives = 147/544 (27%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P  +P + +                  
Sbjct: 19  RPVFAGVLSVLIVVAGLI-----GLRALPISEYPEVVPPSVV---------VRATYPGAN 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 65  PSVIAETVATPLEEQINGVEGMLYMSSQATSDGVLNVTVTFKLGTDPDKAQQLVQNRVSQ 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T       I++     D                  D++       
Sbjct: 125 AEPRLPAEVRALGITTVKSSPDFIMVVNLVSDGDSHDITYLRNYATLNVKDRLARIPGVG 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +     + +S      N      + G    +     Q 
Sbjct: 185 QVQVFGAGDYSMRVWIDPQKAAEHDLAASDISNAISSQNVQAAAGIIGASPSQPGVDLQL 244

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I     G           I    A      
Sbjct: 245 NVNAQGRL-------------RTPEEFGNIIVKTGAGGEITRLRDVARIELGAADYTLRS 291

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 292 LLDGKPAVAVAVLQAPGSNAIEIADNVRATMDQLQLAMPEGVKYEIVYDTTKFVRASIEK 351

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G ++   S+ G+V
Sbjct: 352 VIDTLLEAIALVVLVVILFLQTWRASIIPLIAVPVSIIGTFAVMYVFGFSINALSLFGLV 411

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 412 LAIGIVVDDAIVVVENVERNIEHGLSPRAATYKAMKEVSGPIVAIALVLVAVFVPLAFIS 471

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S +IS F ++++  A+   +++        +             
Sbjct: 472 GLSGQFYRQFALTIAISTVISAFNSLTLSPALAALLLKGHHAPKDWLTRFMDAIFGWFFR 531

Query: 539 AIQF 542
               
Sbjct: 532 GFNR 535



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 911  SLTLPLAIIMIVPMGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILIVEFARE-- 968

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     + R+   ++    L   + TSMA  + V+P+ V    G  +  +  + +  G+
Sbjct: 969  -LEFEGRTPREAAVEASRLRLRPILMTSMAFIMGVVPLVVSTGAGSEMRAAMGVAVFSGM 1027

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      IF+     + +  
Sbjct: 1028 IGVTFFGIFMTPVFYVLLRR 1047



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 380 PL---IAVPVSIIGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI---E 433

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R    K++ E  G  V  ++      +P+A      G     FA+ +A   V++A
Sbjct: 434 HGLSPRAATYKAMKEVSGPIVAIALVLVAVFVPLAFISGLSGQFYRQFALTIAISTVISA 493

Query: 810 SSS 812
            +S
Sbjct: 494 FNS 496


>gi|148926458|ref|ZP_01810141.1| transmembrane efflux protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205355983|ref|ZP_03222751.1| transmembrane efflux protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|145844621|gb|EDK21727.1| transmembrane efflux protein [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205346107|gb|EDZ32742.1| transmembrane efflux protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 1040

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 77/682 (11%), Positives = 180/682 (26%), Gaps = 36/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNDDGSFLRLKDIADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        I + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIIINLQSGANALHTAELVQAKMQELSKNFPKGLTYNIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VIKTFIEALVLVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  +            F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGDPFKFVKKFNDFFDWS 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSV 593
                   A      I  +   C +     +        +  +    L +        S 
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLNKAVPSSLVPEEDQGLMISIINLPSASA 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +  +          +G K+ +  + +    S  +     M            +   
Sbjct: 582 LHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLKDWKDRNVSADE 641

Query: 654 TEIVGPKISRELIRKGIVGVII 675
             +   K          + + +
Sbjct: 642 IAMELNKKFAFDRNASSIFIGL 663



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 91/244 (37%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DIADVEIGSQQYSSQGRLNGNDAVPIIINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N      K   E I++ I   I + + ++I +++  K +   L  +  + + +  T    
Sbjct: 326 NIPYDTTKFVIESIKEVIKTFIEALVLVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLVGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|325983396|ref|YP_004295798.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Nitrosomonas sp. AL212]
 gi|325532915|gb|ADZ27636.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Nitrosomonas sp. AL212]
          Length = 1052

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 81/573 (14%), Positives = 177/573 (30%), Gaps = 40/573 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL  A+     Q  ++++P   P               +++  + 
Sbjct: 8   RPIFASVLSIIIVLAGLAAAM-----QLPIEQYPRITPPT-------------VIVTANF 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   L   EG+  F+     +    IT++F      +     V+ 
Sbjct: 50  PGASAETVIKTVAAPIEEKLSAIEGLLYFNSSADSSGRLTITVTFEIGTDIDRATFNVSN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  + +++ +         +++            +  S  I    +D I  S
Sbjct: 110 EVNTALARLPDEVRRSGITIQKRTNDLLLVFAVTSQDPQHTGLFLSNFITNNILDDIRRS 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P R+ QL  TT+ ++      N        G        
Sbjct: 170 PGVGEARIFGAQDYSMRIWLRPDRMAQLGITTSDIATAIRAQNAQPAVGKIGQEPALADQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  K  +              +  +    I   +      +      I       
Sbjct: 230 QLVYTVTAKGRL-------------LEPEQFENIILRSDGARGVLYLKDVARIELGAQDY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L            ++  +   T          L+         +V          
Sbjct: 277 STRTLLNGQPGLGIGVFLRSGANALDTAAAVKARMNELQHYFPEGVQYVVSYDISVFVKA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +  L+   +I +++I T A L LLG ++   ++
Sbjct: 337 SIWEVIKTLGEAMLLVVLVVYLFLQSWRATLIPIIAIPISLIGTFAGLWLLGYSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E I     ++  S   +      +  S +    +  +   + 
Sbjct: 397 FAMVLSIGIVVDDAIVVLENIERLMTQEKLSPMNAAIKAMQQVSSAVVAMTMVLVAVFIP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   R FA+T+ ++ +IS   A+++   +   ++R    +S+     +  F 
Sbjct: 457 VAFLGGIAGELYRQFAVTVAVAGVISGIVALTLTPTLCAALLRPTHRQSVFFTWFNTHFE 516

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
                 +  +          +L     I  L  
Sbjct: 517 QVRRFYVGMVGLSLRHSIRCVLIFAVVIVGLMV 549



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 54/134 (40%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  I  + + +  T     L G   N   + A++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPIIAIPISLIGTFAGLWLLGYSINTLTLFAMVLSIGIVVDDAIVVLENI--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S  +   K++ +     V  +M      +P+A  G   G +   FA+ +A   
Sbjct: 420 LMTQEKLSPMNAAIKAMQQVSSAVVAMTMVLVAVFIPVAFLGGIAGELYRQFAVTVAVAG 479

Query: 806 VVAASSSIFIAAPI 819
           V++   ++ +   +
Sbjct: 480 VISGIVALTLTPTL 493



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 73/200 (36%), Gaps = 10/200 (5%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
             + + I         Q          + L    I    ++ + + + +  +F+ W   + 
Sbjct: 834  ALVESIAATTLPEGYQIAWTGAAFQEKRLGSAAIFAFSLAVVMVFLILAAQFETWALPVA 893

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             I  +   +   L    L G+  ++     ++TLIG +  + +++ +      +     +
Sbjct: 894  VIMAIPFAMLGALAAILLRGMPNDIYFQIGMVTLIGLTAKNAILLVEFA---SQRMKQGV 950

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA-ASS 811
                   +S        V TSMA  + V+P+ +    G +   S    +  G+++A   +
Sbjct: 951  DATQAAIQSAQLRFRPIVMTSMAFILGVVPLVIATGAGSAARQSMGTGVFGGMIMATTVA 1010

Query: 812  SIFIAAPILLFIYDWRAKNA 831
            +IF+  P+    +  + +  
Sbjct: 1011 TIFV--PLFFSWFVRKHEPK 1028



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 59/527 (11%), Positives = 138/527 (26%), Gaps = 34/527 (6%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R++    +L   +  +GL++ + +     +       +    I     L   + L   V
Sbjct: 530  LRHSI-RCVLIFAVVIVGLMVLVKHIPESLVPAEDQGFVIAAVI-----LPDSATLARTV 583

Query: 61   DEDD-FVNGFLQMYSDELRSF-LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
               D  V   +      +  F +          +   + I +   D   +   A++    
Sbjct: 584  QTADAVVAELMSKEPAVIFQFAVNGLDFIGGGNKTNVSTIFVRLKDWSERTVSAEETVKK 643

Query: 119  LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            +  V ++                  S    +  +         Q   ++ + +  +    
Sbjct: 644  IFQVGAQQPDGLAIAFNPPAIRGLGSTGGFELFVQSRAGSDTAQLAVVVNEFMQALRQEP 703

Query: 179  STIQRLGSHR-ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                     R  + Q   E D ++        A +         +     F         
Sbjct: 704  RLATVNSFLRSSVPQYFIEVDEAKAVAQGVAIADIYDTLQSTMGTFYVNDFNRFGRTYRV 763

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Q                  A          V +            ++          +
Sbjct: 764  QLQAE---------------AAFRMKAEDLGKVYVRAQSGAMVPLSALSTVKHIVGAEQL 808

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                 L A  I  +  SG +       +E+                    E+R       
Sbjct: 809  ERFNGLLAAKIMGSGASGVSSGEAIALVESIAATTLPEGYQIAWTGAAFQEKR------- 861

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
              S      ++   +V ++L          +    +I   ++  LA + L G    +   
Sbjct: 862  LGSAAIFAFSLAVVMVFLILAAQFETWALPVAVIMAIPFAMLGALAAILLRGMPNDIYFQ 921

Query: 418  AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             G+V  IGL   + IL+ E   +  ++      +        +  I  +++  ++  V L
Sbjct: 922  IGMVTLIGLTAKNAILLVEFASQRMKQGVDATQAAIQSAQLRFRPIVMTSMAFILGVVPL 981

Query: 478  FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
                  G  A +     +   ++++   A   V     + +R  + K
Sbjct: 982  VIATGAGSAARQSMGTGVFGGMIMATTVATIFVPLFFSWFVRKHEPK 1028


>gi|28870273|ref|NP_792892.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853520|gb|AAO56587.1| aliphatic isothiocyanate resistance protein SaxF; AcrB/AcrD/AcrF
           family [Pseudomonas syringae pv. tomato str. DC3000]
 gi|330965813|gb|EGH66073.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           actinidiae str. M302091]
 gi|331016495|gb|EGH96551.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 1063

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/595 (11%), Positives = 160/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRASFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTELDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGPDGEITRLKDVARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+ G        +         GS   
Sbjct: 283 LLNNQPAVAMPIFQRPGSNAIDISNDVRARMAELKKGFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVVLFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVEATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKAHDAPKDRFSRFLDKILGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQD 577



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 90/271 (33%), Gaps = 18/271 (6%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   D  G +++       + L+      ++     +   N                
Sbjct: 785  QQFRQDADQIGQLKVRNNLGEMIPLATFVKVSDTAGPDRVMHYNGFITAEINGAAAPGFS 844

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAMLI 682
               AQT V +++++++                  ++ + I  G   + +      +A L+
Sbjct: 845  SGQAQTAVEKLLREELP--------NGMVYEWTDLTYQQILSGNTALFVFPLCVLLAFLV 896

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                   W   L  I  + + +   +    + G + N+     ++ L+G +  + +++ +
Sbjct: 897  LAAQYESWSLPLAVILIVPMTLLSAIAGVIIAGSDNNIFTQIGLIVLVGLACKNAILIVE 956

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +         +S  D + ++    L   + TS A  + V+P+ +    G  +  +  +
Sbjct: 957  FAKD---KQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGV 1013

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  G++      + +     + I ++  + 
Sbjct: 1014 AVFSGMLGVTFFGLLLTPVFYVLIRNYVGRQ 1044



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +   +   K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVEATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|222824537|ref|YP_002576111.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           lari RM2100]
 gi|222539758|gb|ACM64859.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           lari RM2100]
 gi|225423391|gb|ACN91213.1| CmeB [Campylobacter lari]
          Length = 1040

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/635 (12%), Positives = 171/635 (26%), Gaps = 41/635 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++      L    ++++P+  P               + +    
Sbjct: 9   RPVFASVVAIIISLAGII-----GLYSLPVEQYPALTPPV-------------VKVSATY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEGIGV----FSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +      +     S       +++ F      +     V  
Sbjct: 51  SGADAQTVAQTVAIPLEDAINGVENMIYMDSTSSSSGDMSLSVYFNIGTDPDQATVDVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    +KL  D KK  +         + ++           +E         +D +   
Sbjct: 111 RISAAMAKLPEDVKKTGVSVRKTGSSILAVASLYSPDGSMDELEVYNYAALNILDDLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    +P  L +   T   +       N        G   + +  
Sbjct: 171 PGVGNAVAIGSRNYSMRIWLNPDLLNKYQVTATDVIAAVREQNAQYATGKIGQEPVVERS 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  +  +                 +    I                 +G      
Sbjct: 231 PYVYSVTMQGRL-------------KNAKEFENIILRTNSDGSFLRLKDVAEVGLGSREY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        +   +   +   T E        L           V          
Sbjct: 278 TFNGRLNGNNATPILIFLQTGANAVNTAELVKAKFEELSKSFPEGLAYKVPYDTTLFIKA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+++ +   +  ++   ++ ++V+ T A L +LG ++ L ++
Sbjct: 338 SIQEVIKTFFEALILVVIVMYLFLKNFRSTIIPMIAVPVSVLGTFAGLYVLGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             +VL IG+ VD  I+V E I     ++++      ++      A   +    +   +  
Sbjct: 398 FALVLAIGIVVDDAIIVVENIDRIIHEDENISIKDAAIQAMEEVAAPVVSIVLVLCAVFI 457

Query: 475 VVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V F  G  G   R FAIT+ +S+ IS F A+++  ++    +R  + K   I       
Sbjct: 458 PVSFISGFVGEIQRQFAITLAVSVTISGFVALTLTPSLCAIFLRRNESKPFYIVKKFNDI 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                       A      +  +       +                +        V+L 
Sbjct: 518 FDWSIEVFGAGVAYMLKRVVRFVLVFFIFLIALLGLFKIVPHSLVPNEDQGSFLSVVNLP 577

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
              S   + Q  D   +     +N    +     D
Sbjct: 578 AASSLNRTTQAMDTLAEQLGKNENIENIVGLIGYD 612



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 88/246 (35%), Gaps = 13/246 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +    + +        ++       ++V    +++   +++++  P     
Sbjct: 266 DVAEVGLGSREYTFNGRLNGNNATPILIFLQTGANAVNTAELVKAKFEELSKSFPEGLAY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                     +  I++ I     + I ++I +++  K +   +  +  + + +  T    
Sbjct: 326 KVPYDTTLFIKASIQEVIKTFFEALILVVIVMYLFLKNFRSTIIPMIAVPVSVLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + +   +     +IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALVLAIGIVVDDAIIVVENI-DRIIHEDENISIKDAAIQAMEEVAAP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            V    +  + +  + +       + G +   FAI +A  + ++   ++ +   +     
Sbjct: 445 VV----SIVLVLCAVFIPVSFISGFVGEIQRQFAITLAVSVTISGFVALTLTPSLCAIFL 500

Query: 825 DWRAKN 830
                 
Sbjct: 501 RRNESK 506



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 64/165 (38%), Gaps = 6/165 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G +   +  + + + +  ++ +W   L  IT +   +  +L F  L GI+ ++     +
Sbjct: 867  AGQIAFALGLLFVFLILAAQYERWLMPLAVITAVPFAVFGSLLFVWLRGIDNDIYFQTGL 926

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            L LIG S  + +++ +   +         S  D    +        V TS+A    +LP+
Sbjct: 927  LLLIGLSAKNAILIVEFAMEE--HLKKGKSIFDAAISAAKLRFRPIVMTSLAFICGILPL 984

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                  G +   +    +  G++ A++ +IF        +  +  
Sbjct: 985  VFAYGAGSASRHAIGTGVVGGMIAASTVAIFFVPLFFYILESFNK 1029


>gi|59801712|ref|YP_208424.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           FA 1090]
 gi|59718607|gb|AAW90012.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           FA 1090]
          Length = 1067

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 162/570 (28%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H +     
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HAIYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              + G +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEGSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNVVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNIYLKDVAKVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A+L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  ++
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMI 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFDSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 100/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ +  G+      +    + +G++V    S+F+     + +  +  + A
Sbjct: 994  VPLYIAAGASSASQRAIGTTVFWGMLVGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 95/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNIYLKDVAKVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMILVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+   +   FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|322835179|ref|YP_004215205.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
 gi|321170380|gb|ADW76078.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
          Length = 1050

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/505 (11%), Positives = 136/505 (26%), Gaps = 32/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +       P   +  +P+ +P +                    
Sbjct: 10  RPIFAAVLSILILVTGAIAI-----PLLPVSEYPNVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMVYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++  S     +  D++     
Sbjct: 114 AQAEARLPEDVRRQGVTTQKQSPTLTLVVHLVSPSGKYDSLYLSNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   +      
Sbjct: 174 VGQIQIFGAGEYAMRVWLDPNKVAARGLTASDIVKAMQEQNVQVSAGQLGAEPMPKDSDY 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LLSINAQGRLKDED-------------EFGKIILKSGDNGEIVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +        L                      S 
Sbjct: 281 RAQLNNKDAVGIGIFQSPGANAIDLSDAVRAKMDELATRFPEGMTWRAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T      LV++V+ + +   +  ++   ++ ++VI T ++L LLG +L   S+ G
Sbjct: 341 SAVVHTLLEAVVLVVLVVILFLQTWRASIIPLLAVPISVIGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPRDAAHQAMREVSGPIVAIALVLCAVFVPMAF 460

Query: 480 FGGGAVRGFAITMGLSILISMFTAI 504
             G   + +        + ++ +AI
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAI 485



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 86/240 (35%), Gaps = 12/240 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + + +    ++  +R                       V +            + + V+ 
Sbjct: 252 IILKSGDNGEIVRLRDVARIEMGSGSYALRAQLNNKDAVGIGIFQSPGANAIDLSDAVRA 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-----ISAIAMLIYIWIRFKWYFALG 695
           K+ E+      +      P      +R  I  V+        + +L+ I     W  ++ 
Sbjct: 312 KMDEL-ATRFPEGMTWRAPYDPTVFVRDSISAVVHTLLEAVVLVVLVVILFLQTWRASII 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++     +
Sbjct: 371 PLLAVPISVIGTFSILYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIEE---GL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
           + RD   +++ E  G  V  ++      +PMA   G        FA+ +A   V++A +S
Sbjct: 428 APRDAAHQAMREVSGPIVAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTVISAINS 487



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 54/147 (36%), Gaps = 8/147 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LELQGKGIIESALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++      +F+     + +     +  
Sbjct: 1016 MLGVTLFGLFLTPVFYVALRKLVTRKK 1042


>gi|296534122|ref|ZP_06896622.1| multidrug efflux pump BpeF [Roseomonas cervicalis ATCC 49957]
 gi|296265553|gb|EFH11678.1| multidrug efflux pump BpeF [Roseomonas cervicalis ATCC 49957]
          Length = 1059

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/557 (10%), Positives = 137/557 (24%), Gaps = 35/557 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  IG + A      +  +  +P   P               + +    
Sbjct: 10  RPVFAAVISIAITLIGAIAAF-----RLPISEYPEIAPPT-------------VTVNATY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                G +       L   +     +   + +   +    +T+ F      +     V  
Sbjct: 52  PGASAGTIAATVATPLEQEINGVDNMLYLTSQSTGDGRLTVTVVFRQGVDVDAAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  L         +++               S        D++   
Sbjct: 112 RVAVAEPRLPEEVRRLGLQVRKASPDLLMVVHMLSPDGSRDQQYVSNYATLNVRDRLARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DPSR+     T  ++       N                 
Sbjct: 172 DGIGDVQIFGARDYAMRIWLDPSRVAARGLTPGEVVEALRRANAQVAAGGLNQPPTGIGQ 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G  +            +N           +    +     G           +       
Sbjct: 232 GQAF-----------QVNVQALGRLVTPEEFAQTVVATGEGGAPVRLRDIARVELGSQDY 280

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T +        L     P     +          
Sbjct: 281 TVNAYLNNQTATAIPLFQRPGSNALATADAVRHTMEELSKSFPPGLQYSIVYDTTRFIAQ 340

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   +I +++I T   +S LG +L   S+
Sbjct: 341 SMEAVLHTFIEAILLVVVVVILFLQSWRAAVIPLLAIPVSIIGTFVAMSALGLSLNTLSM 400

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G++L IG+ VD  I+V E +            + +         +    +      V  
Sbjct: 401 FGLILAIGIVVDDAIVVVENVERHLADGMQPRAAAERTMDEVGFALLAIALVLCAVFVPT 460

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            F  G A   +        + ++ +A+ +   +   +            P          
Sbjct: 461 AFISGIAGAFYQQFAVTIAVATLISAL-VSLTLSPALAALLLRPHSHHAPTGWRRWAGAP 519

Query: 538 IAIQFMRARFWGVGISI 554
           + + F         +S+
Sbjct: 520 VGLFFRGFNRVFDAMSL 536



 Score = 46.2 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 66/213 (30%), Gaps = 10/213 (4%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                 +      +E V                 +              + V+      L+
Sbjct: 842  KPGISTGQAIAAMEAVLATELPEGFGFEWTEIALQETTQGNTAPIAFGLAVVFVF---LL 898

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
               +   W   L  +    + +   L      G++ N+     ++ L+G +  + +++ +
Sbjct: 899  LAAMYESWLLPLAVVLIAPMSVLAALMGVLWRGLDNNVLVQVGLVVLVGLAAKNAILIVE 958

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
              R         +S     + +    L   + TS+A  + VLP+A+    G  +  S   
Sbjct: 959  FAR---AAEAEGMSRWQAAEAAARTRLRPILMTSLAFILGVLPLAIATGAGAEMRQSLGT 1015

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +  G++      + +  PI   +    A+  +
Sbjct: 1016 AVFAGMLGVTVFGL-VFTPIFYVVARAMARREK 1047



 Score = 39.7 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 49/475 (10%), Positives = 117/475 (24%), Gaps = 39/475 (8%)

Query: 62   EDDFVNGFLQMYSDE--LRSFLKKEGIGVFSMRQ--IQNKITLSFADSRFKE-------N 110
             D  V    +   +   +   +   G    +         I ++      +         
Sbjct: 598  TDAVVRRASEAVLEIPGVEGAVAFVGFDGATFTNAPNSGVIFVTLKPFEERAAQGLAYGA 657

Query: 111  IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
            I  +V   L      + +      +          +  Q+   Q      +      R  
Sbjct: 658  ILGQVQARLAQDREAMALVIPPPSVPGIGTGGGFKLYVQDRTGQGPRALEQ---ATQRVV 714

Query: 171  IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
                   E  +     +     L  E D S+   L    +++   + L       F+   
Sbjct: 715  GAAFQRPEIAMAFTLFNTSTPTLRTEVDRSKAEMLGVPVSRV--AETLSVYLGSAFVNDF 772

Query: 231  RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
              L  +       ++   ++                + V  +       +          
Sbjct: 773  NILGRTYRVTAQADEAQRLT---------------PRDVALLRTRNDDGQMVPVGALARF 817

Query: 291  GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                A     R    P       +     +G        +LA  L  G       I  + 
Sbjct: 818  EDDTAPYRVPRYNLYPAAEIQGAAKPGISTGQAIAAMEAVLATELPEGFGFEWTEIALQE 877

Query: 351  NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                +    +       +    V ++L  +       L       ++V+  L  +   G 
Sbjct: 878  TTQGNTAPIAF-----GLAVVFVFLLLAAMYESWLLPLAVVLIAPMSVLAALMGVLWRGL 932

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
               +    G+V+ +GLA  + IL+ E  R    +  S + + +         I  +++  
Sbjct: 933  DNNVLVQVGLVVLVGLAAKNAILIVEFARAAEAEGMSRWQAAEAAARTRLRPILMTSLAF 992

Query: 471  LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            ++  + L      G    +     +   +L      +       +      + + 
Sbjct: 993  ILGVLPLAIATGAGAEMRQSLGTAVFAGMLGVTVFGLVFTPIFYVVARAMARREK 1047


>gi|262172071|ref|ZP_06039749.1| RND multidrug efflux transporter [Vibrio mimicus MB-451]
 gi|261893147|gb|EEY39133.1| RND multidrug efflux transporter [Vibrio mimicus MB-451]
          Length = 1036

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/651 (9%), Positives = 172/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +     TT+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRLKPELMAGRGVTTSDISDALNKENIESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSPEDFEYLVVKRASDGTPVYLKDVSDVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKDTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQFIDRLFAGLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRKIVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLIPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILDDWNE 624



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPVYLKDVSDVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKDTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|225021306|ref|ZP_03710498.1| hypothetical protein CORMATOL_01325 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946039|gb|EEG27248.1| hypothetical protein CORMATOL_01325 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 384

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 129/314 (41%), Gaps = 11/314 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           +P +   +      I F+  R      ++   +  +  +   G N GIDF+GG ++ + A
Sbjct: 3   SPSTATQIFTGDGNIDFVDKRRTAYWATLAIIVVCLLGITLRGFNLGIDFEGGTKMNMPA 62

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                  V  +  ++  +     Q        ++ +  +           + +      +
Sbjct: 63  ANLETSQVEETFTKATGVDPEQVQIVGSGDTRILEINSKRLTQGQIDAARQALFDAYKPV 122

Query: 646 V----PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                          V       +  + ++ + +  IA   YI IR +   A+ AI  L 
Sbjct: 123 NSAGQQTPDAIGDSTVSESWGSTITNRMLMSMGVFLIAAFAYIAIRLQREMAVAAILALF 182

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRD 759
           +D+    G +A+ G E     V  +LT++ +S+ D V+V+D++R+N   Y     +++ +
Sbjct: 183 VDLITITGLYAIAGFEVTPATVIGLLTVLAFSLYDTVIVFDKVRENTAGYLGNKRMTYGE 242

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIF 814
             + +IN+T+ RS+ T++ + + +L +      + G   +   A+    G++    SSIF
Sbjct: 243 HANLAINQTVMRSISTTVISVLPILALMIVAVWLMGVGTLKDLALIQLIGVIWGTVSSIF 302

Query: 815 IAAPILLFIYDWRA 828
           +A P L+ I +   
Sbjct: 303 LATPFLVSIKNRTK 316


>gi|157370171|ref|YP_001478160.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Serratia
           proteamaculans 568]
 gi|157321935|gb|ABV41032.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Serratia
           proteamaculans 568]
          Length = 1048

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/507 (11%), Positives = 133/507 (26%), Gaps = 36/507 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++       P   +  +P  +P               + +    
Sbjct: 10  RPIFAAVLSILIFVGGVIAI-----PLLPISEYPDVVPP-------------SVQVRAQY 51

Query: 63  DDFV-NGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                    +  +  L   +   E +         + +   T++F      +    +V  
Sbjct: 52  PGANPKEIAETVATPLEEAINGVENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L  D ++  + T  +     ++           ++        +  D++   
Sbjct: 112 RVAQAEARLPEDVRRQGVTTQKQSPALTLVVHLVSPSGKYDSLYLRNYATLKVKDELARL 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP+++     T + +       N        G   +    
Sbjct: 172 PGIGQVQIFGAGEYAMRIWLDPNKVASRGLTASDVVSAMQEQNVQVSAGQLGAEPMPTRS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I                 I       
Sbjct: 232 DYLLSINAQGRLQTEE-------------EFGNIILKSGDNGEVVRLRDVARIEMGSGSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +            A L                      
Sbjct: 279 ALRAQLNNKDAVGIGIFQAPGANAIELSNAVRAKMAELSTRFPDGMSWQAPYDPTVFVRD 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV++V+ + +   +  ++   ++ ++++ T A L LLG +L   S+
Sbjct: 339 SISSVVDTLLEAVLLVVLVVILFLQTWRASIIPLLAVPISIVGTFAALYLLGFSLNTLSL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     +  S   +           I    +      V +
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIIAIAVVLCAVFVPM 458

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAI 504
            F  G   + +        + ++ +AI
Sbjct: 459 AFLSGVTGQFYKQFAVTIAISTVISAI 485



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 56/148 (37%), Gaps = 8/148 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L     S  +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LELQGKSIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++      +F+     + +     +  R
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRRMVTRKTR 1043



 Score = 45.8 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPISIVGTFAALYLLGFSLNTLSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA   G        FA+     I 
Sbjct: 425 E---GLSPLAAAHQAMREVSGPIIAIAVVLCAVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASSS 812
           ++   S
Sbjct: 478 ISTVIS 483


>gi|119775631|ref|YP_928371.1| protein-export membrane protein SecD [Shewanella amazonensis SB2B]
 gi|119768131|gb|ABM00702.1| protein-export membrane protein SecD [Shewanella amazonensis SB2B]
          Length = 611

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 139/524 (26%), Positives = 259/524 (49%), Gaps = 28/524 (5%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +      P  +  SM+   P  + +   + I LGLDLRGG   +++VD         + 
Sbjct: 102 LLAEAAQNPAAITLSMVPAAPPWLNRLGLSPIKLGLDLRGGVQFLMQVDTAPVFKAQGEA 161

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
               +R  ++ +G+   ++ + ++++T    D+         +      +          
Sbjct: 162 LKGAIRQVIRDKGLRSVAVLKDESRLT-ENPDALKLSGATQSLAELRGWLLLNYP----- 215

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
                + +  I + L       ++S  +++++ I+R RI ++GI+E+ +QR G  RIL++
Sbjct: 216 QWQSESADGAILLRLKDTERVALVSQTLKENISIMRGRIQELGITEAIVQRHGESRILVE 275

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           LPG QDP   ++++G TA +SFH++    +     FG          +  +     + G 
Sbjct: 276 LPGVQDPVAAKRVIGATASLSFHELKEGGTALQTPFGDG--------RVGLNPAPVLGGE 327

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI---- 308
           H+  A +  D      V  +   E G R                  + R      +    
Sbjct: 328 HIVDARSGSDEMGRPAVNIVLDTEGGKRMSDFSRGHIGEPMATRYSEYRASAEGTVKDSR 387

Query: 309 ------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   +    +  I+G  + E A  LA +LRAGS+   + I +ER +G  LG+++I+
Sbjct: 388 VISVATINSQLGNRFSITGLGSHEEAQELAMLLRAGSMTAPVTIQKERTIGPSLGAENIH 447

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIV 421
            G  A+  G+   +LFM + Y + G VA+ ++  N+++ L LL+L+  A LTLP IAG+V
Sbjct: 448 NGFAALALGMGATLLFMALWYRRLGWVANVALLANLVMLLGLLALIPGAVLTLPGIAGLV 507

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+L+ ERIR++ ++ +S+  ++D GF+ A+ TI D+N+T +I  +VL+  G
Sbjct: 508 LTVGMAVDTNVLIFERIRDKMKEGRSLALAIDKGFASAFGTIVDANLTTMITALVLYAIG 567

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G ++GFA+T+GL ++ SM T I + R ++ ++    + K++ I
Sbjct: 568 NGPIQGFALTLGLGLVTSMITGIFMSRLIINWVYGRDERKAVRI 611



 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 94/247 (38%), Gaps = 5/247 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                            + D    +     + L       G    +      +  +   +
Sbjct: 366 EPMATRYSEYRASAEGTVKDSRVISVATINSQLGNRFSITGLGSHEEAQELAMLLRAGSM 425

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
               TIQ    +GP +  E I  G   + +   A L+++ + ++      A   L+ ++ 
Sbjct: 426 TAPVTIQKERTIGPSLGAENIHNGFAALALGMGATLLFMALWYR-RLGWVANVALLANLV 484

Query: 706 KTLGFFA-LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             LG  A + G    L  +A ++  +G +V+  V++++R+R  MK      S    IDK 
Sbjct: 485 MLLGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDKMKE---GRSLALAIDKG 541

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G  V  ++   I+ L +   G   I  FA+ +  G+V +  + IF++  I+ ++Y
Sbjct: 542 FASAFGTIVDANLTTMITALVLYAIGNGPIQGFALTLGLGLVTSMITGIFMSRLIINWVY 601

Query: 825 DWRAKNA 831
               + A
Sbjct: 602 GRDERKA 608


>gi|294627537|ref|ZP_06706120.1| multidrug efflux transporter [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598168|gb|EFF42322.1| multidrug efflux transporter [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1049

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/629 (11%), Positives = 167/629 (26%), Gaps = 35/629 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        L+++PS  P   I+                 
Sbjct: 8   RPIFAWVIAIVITLAGALSIL-----SLPLEQYPSIAPPT-IN--------VSATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L     +   S       ITL+F      +    +V   +  
Sbjct: 54  AQTVQNSVTQILEQQMTGLDHLLYMSSSSSSAGTASITLTFDSGTDPDTAQVQVQNKVSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEK-EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + L    + N +  T        ++     +     + +    ++    D I      
Sbjct: 114 GEAMLPEAVQSNGVTVTKSTGSSMFMVLAFTSEDGSMDSTDIGDYMVSTLQDPISRLNGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP +LR      A +S      N        G           
Sbjct: 174 GGVNVFGS-EYSLRVWLDPDKLRTYALMPADVSNAISAQNADVSSGALGALPAVQGQQLN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  + ++                 +    +   + G           +          
Sbjct: 233 ATVTSRSKL-------------KTPAQFEAIVLKSQTGGATVHLRDVARVELGSKSYASS 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   +          +     +        L+          +          S  
Sbjct: 280 SKYNGKSASGMGLELATGANALAAAKAVEAKLEQLQPYFPTGLKYEIAYDTTPFVRISIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+++ +   +  LV   ++ + ++ T  +L+LLG ++   ++  +
Sbjct: 340 EVVKTLLEAIVLVVLVMYLFLQNWRATLVPVIAVPVVLLGTFGVLALLGYSINTLTMFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    + +  S   +      +    +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERLMSEEGMSPRQATYTSMGQISGALVGIALVLTAVFLPMAF 459

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FG   G   R F++T+  ++L+S+  A+++  A+   +          ++          
Sbjct: 460 FGGATGEIYRQFSVTIAAAMLLSLLVALTLSPALCASL-LKPIAHGQQVSRKGVLGRFFG 518

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               +F R                      +     +      +L        D  ++  
Sbjct: 519 WFNDRFDRGADGYGRGVGKLIGHRKFGGLVYLALLVVMALLFWRLPSSFLPDEDQGMLMV 578

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              +             ++     L+   
Sbjct: 579 MFTTPAGATQQRTQQSIDQASEFILKQPE 607



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/404 (12%), Positives = 129/404 (31%), Gaps = 8/404 (1%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L  + ++ +    A I L      D +    +   + ++    +  ++         +  
Sbjct: 75  LLYMSSSSSSAGTASITLTFDSGTDPDTAQVQVQNKVSQGEAMLPEAVQSNGVTVTKSTG 134

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMG--LSILISMFTAISIVRAMMIFIIRYKKMKS 522
            S    L  T          +  + ++        ++    +++  +     +     K 
Sbjct: 135 SSMFMVLAFTSEDGSMDSTDIGDYMVSTLQDPISRLNGVGGVNVFGSEYSLRVWLDPDKL 194

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                +              + +   G   ++     +  +     L     F+  +   
Sbjct: 195 RTYALMPADVSNAISAQNADVSSGALGALPAVQGQQLNATVTSRSKLKTPAQFEAIVLKS 254

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                 V L  V       +    S +      + +        +++A  + +E   +++
Sbjct: 255 QTGGATVHLRDVARVELGSKSYASSSKYNGKSASGMGLELATGANALAAAKAVEAKLEQL 314

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
               P               R  I + +  ++ + + +++ +++  + W   L  +  + 
Sbjct: 315 QPYFPTGLKYEIAYDTTPFVRISIEEVVKTLLEAIVLVVLVMYLFLQNWRATLVPVIAVP 374

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T G  AL G   N   + A++  IG  V+D +VV + +     +    +S R   
Sbjct: 375 VVLLGTFGVLALLGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERLMSEEGMSPRQAT 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
             S+ +  G  V  ++      LPMA +G   G +   F++ +A
Sbjct: 433 YTSMGQISGALVGIALVLTAVFLPMAFFGGATGEIYRQFSVTIA 476



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 80/261 (30%), Gaps = 17/261 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                   G   +   ++  V  S   S+  +     +S  N                   
Sbjct: 779  RMLPADIGRWYVRNSSSEMVPFSAFSSSAWAYAPQVLSRFNGVESMEVTGSAASGISSGQ 838

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WI 686
            A   +  +V K   ++    +  + +                 ++ +   + +++    +
Sbjct: 839  AMNDIAGLVGKLGKDVGYAWSGMSYQEQAAG--------AQTWMLYAVSLVFVFLCLAAL 890

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               W   +  +  + + I   L    L G+  ++     +L  +G +  + +++ +  ++
Sbjct: 891  YESWSIPISVMLAVPVGIVGALLATWLRGLSNDIYFQVGLLATMGLAAKNGILIVEFAKE 950

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
               L        +    +    L   V TS+A  + VLPM V    G     S    +  
Sbjct: 951  ---LEEKGQPLIEATLHAARMRLRPIVMTSLAFLLGVLPMVVSSGAGSGGRHSLGTGVLG 1007

Query: 804  GIVVAASSSIFIAAPILLFIY 824
            G +V+    IF      + + 
Sbjct: 1008 GTLVSTLLGIFFVPLFYVMVR 1028


>gi|293398650|ref|ZP_06642828.1| HAE1 family hydrophobic/amphiphilic exporter-1 (mainly G- bacteria)
           [Neisseria gonorrhoeae F62]
 gi|291611121|gb|EFF40218.1| HAE1 family hydrophobic/amphiphilic exporter-1 (mainly G- bacteria)
           [Neisseria gonorrhoeae F62]
          Length = 1067

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 162/570 (28%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H +     
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HAIYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              + G +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEGSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNVVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNIYLKDVAKVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A+L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  ++
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMI 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFDSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 100/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ +  G+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAAGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 95/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNIYLKDVAKVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMILVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+   +   FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|262402739|ref|ZP_06079300.1| RND multidrug efflux transporter [Vibrio sp. RC586]
 gi|262351521|gb|EEZ00654.1| RND multidrug efflux transporter [Vibrio sp. RC586]
          Length = 1036

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/651 (9%), Positives = 172/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +     TT  +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVTTNDISDALNKENIESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARSYQSPEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHQEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFVTGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++     S            L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPSRFNLFIDRLFAGLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I     R+      I+ +           +   +       +     R  D +    
Sbjct: 514 YRKIVSRAIRWRWAAPVIIAACIGGSYGLMQLVPAQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILDDWNE 624



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 87/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHQ 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + V    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFVTGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K +R
Sbjct: 479 LTLTPVLGSKLLKANVKPSR 498



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|240014612|ref|ZP_04721525.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           DGI18]
 gi|240081307|ref|ZP_04725850.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           FA19]
 gi|240121134|ref|ZP_04734096.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           PID24-1]
 gi|240123962|ref|ZP_04736918.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           PID332]
 gi|268597411|ref|ZP_06131578.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           FA19]
 gi|268682591|ref|ZP_06149453.1| drug efflux protein [Neisseria gonorrhoeae PID332]
 gi|268551199|gb|EEZ46218.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           FA19]
 gi|268622875|gb|EEZ55275.1| drug efflux protein [Neisseria gonorrhoeae PID332]
          Length = 1067

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 162/570 (28%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H +     
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HAIYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              + G +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEGSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNVVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNIYLKDVAKVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A+L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  ++
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMI 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFDSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 100/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ +  G+      +    + +G++V    S+F+     + +  +  + A
Sbjct: 994  VPLYIAAGASSASQRAIGTTVFWGMLVGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 95/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNIYLKDVAKVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMILVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+   +   FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|115378262|ref|ZP_01465431.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Stigmatella aurantiaca DW4/3-1]
 gi|115364738|gb|EAU63804.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Stigmatella aurantiaca DW4/3-1]
          Length = 975

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 67/534 (12%), Positives = 150/534 (28%), Gaps = 24/534 (4%)

Query: 81  LKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
           ++       +      ++IT++F  +R  E  A  V   +   +++L     +  +V   
Sbjct: 1   MEGMRYISSTSANDGTSQITITFEPTRDIEVAAVDVQNRVSRASARLPSQVNQTGIVVNK 60

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
                ++    +       A   S        D I       +          +    DP
Sbjct: 61  ASSQMLLTLGLSSPDNRYDAKFLSNYADVNLKDAIKRVRGVGEVRIFGERKFSMRLWLDP 120

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           + +     T   +       N        G     +    Q  V     +          
Sbjct: 121 TSMASRGLTPQDVVRALQEQNLQVAAGQVGQPPSSEEQPYQMAVRAHGRL---------- 170

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
               +  +    +       R         +                             
Sbjct: 171 ---IEPEEFGEIVLQRSADGRLVRMKDVGRVELGAENYGTIMRFNGKTGVGIAIFQLPTA 227

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +     +        L     P            A   S +    T      LV++V+F+
Sbjct: 228 NALDVRDGVVKEMDRLAQQFPPGLEYQTGNDTTLAVRASVNEVIHTLIEAIALVILVIFL 287

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
            +   +  L+   ++ ++++ T A + L+G ++   ++ G+ L  GL VD  I+V E I 
Sbjct: 288 FLHGWRSVLITALTLPVSLVGTFAFVYLMGFSINTLTLFGLTLATGLVVDDAIVVIENIE 347

Query: 440 E-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
                K  S   +   G      A   I    +   I   +     G   R FA+T+ +S
Sbjct: 348 RLMAEKGLSPLKAASEGMKEVSGAVVAISIVLVAVFIPVALFPGTTGSIYRQFALTIAVS 407

Query: 496 ILISMFTAISIVRAM---MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
           + +S F A+++  A+   ++     +K         +  +             +   + +
Sbjct: 408 VGLSTFCALTLTPALSARLLRHHHGQKWIFFRKVDEALDWTRDVYGRALHGLLKHPIIIL 467

Query: 553 SILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           +      +  +        G    + +G + + V     + L+     L  ++ 
Sbjct: 468 AAFLLCIAGTVALFRAAPTGFIPDEDQGYMMITVQGPEGMSLAQTEKVLIEVEN 521



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 74/194 (38%), Gaps = 8/194 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + ++ + ++    +   T  +T +       E+I   I  + +  + + +++    
Sbjct: 234 DGVVKEMDRLAQQFPPGLEYQTGNDTTLAVRASVNEVIHTLIEAIALVILVIFLFL---H 290

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    TL + +  T  F  L G   N   +  +    G  V+D +VV + +    
Sbjct: 291 GWRSVLITALTLPVSLVGTFAFVYLMGFSINTLTLFGLTLATGLVVDDAIVVIENI--ER 348

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGI 805
            +    +S      + + E  G  V  S+      +P+A++ G    I   FA+ +A  +
Sbjct: 349 LMAEKGLSPLKAASEGMKEVSGAVVAISIVLVAVFIPVALFPGTTGSIYRQFALTIAVSV 408

Query: 806 VVAASSSIFIAAPI 819
            ++   ++ +   +
Sbjct: 409 GLSTFCALTLTPAL 422



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 59/147 (40%), Gaps = 6/147 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +      I ++ L IT  LG     G   ++     ++ L+G +  + +++ +   + +
Sbjct: 818 SFSLPFVIILSVPLAITGALGLQMARGFANDVFCQVGLVMLVGLASKNAILIVE-FAEQL 876

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
           +      S  D + ++ +  L   + TS+A  + V+P+      G +   S    +  G+
Sbjct: 877 RE--KGKSTVDAVVEAASVRLRPILMTSIAFLLGVVPLMTASGAGAASRNSLGTAVFGGM 934

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           +V+   +      + + +   R +  R
Sbjct: 935 LVSTVVNFVFIPGLYVLMQRLRGEVKR 961


>gi|283851165|ref|ZP_06368449.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio sp. FW1012B]
 gi|283573561|gb|EFC21537.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio sp. FW1012B]
          Length = 1041

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/681 (9%), Positives = 177/681 (25%), Gaps = 44/681 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G L           + ++P   P               + +    
Sbjct: 9   RPVFAWVIAIILLSLGGLSI-----YSMPIAQYPPIAPP-------------SIAITAYY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +  +S    Q ++ ++F      +    KV  
Sbjct: 51  PGASAETVENTVTQIIEQKMTGLDGMLYLSGYSSSSGQARLEMTFTPGTDPDIAWSKVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L  + +++ +  +      +++     +       +            +   
Sbjct: 111 KLQLALASLPDEVQRSGVTVSKSTRNYLIVVGLVSEDGSMRGEDLRDYAQSTLEKVLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P++L     T   +       N       FG        
Sbjct: 171 PGVGEVEEFGTQ-YAMRVWLNPNKLNSYNLTVDDVITALNAYNVEVSAGQFGGAPAVAGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +                +      +                              
Sbjct: 230 HLNSPI-------------IVQHLLQTPEEFADIPLRINQDGSMVRLKDVGRTELGSERS 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T +        +     P    +           
Sbjct: 277 DIVGFYNGLPSAAMAIRQSAGANALATADAIKSKLEEVSHYFPPGMKVVYPYDTTPFTKV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +++F+ +   +  L+   ++ + ++ T A+L+  G ++ + ++
Sbjct: 337 AIHEVVKTLFEAVVLVFLIMFLFMGNIRATLIPTIAVPVVLMGTFAVLNFCGFSINMLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +         S +    +        
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMSEEGLSPREATAKSMDEITSALVGIGLVLSAVFGP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R F+IT+  S+++S+  A+ +   +   +      K  + +    FFL
Sbjct: 457 MAFFQGSTGVLYRQFSITLIASMMLSVVVALVLTPVLCATL-LKPVPKGHESSENVVFFL 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            P       +  R   V + ++    S    +       +   G +   +  +   D   
Sbjct: 516 RPFFRWFDRIFFRIRSVYVGLVGRSFSKATRYLIFYLAIVATVGFLFQRMPTSYIPDEDQ 575

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST--I 651
               +++      +           VR  +   +  A    +++                
Sbjct: 576 GILTVQATLPSGTATLEQTQAVMKKVRDYFLEQEKDAVESFMDISGVSFGGQGQNMALGF 635

Query: 652 QNTEIVGPKISRELIRKGIVG 672
              +    +   +L  K I  
Sbjct: 636 VKLKDWDRRPGADLKVKAIAA 656



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 74/203 (36%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    LE V       + +    +T         E+++     V++  + M +++ 
Sbjct: 302 ATADAIKSKLEEVSHYFPPGMKVVYPYDTTPFTKVAIHEVVKTLFEAVVLVFLIMFLFMG 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T       G   N+  + A++  IG  V+D +VV + + 
Sbjct: 362 ---NIRATLIPTIAVPVVLMGTFAVLNFCGFSINMLTMFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +S R+   KS++E     V   +       PMA + GS       F+I + 
Sbjct: 418 -ERIMSEEGLSPREATAKSMDEITSALVGIGLVLSAVFGPMAFFQGSTGVLYRQFSITLI 476

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             ++++   ++ +   +   +  
Sbjct: 477 ASMMLSVVVALVLTPVLCATLLK 499



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 81/270 (30%), Gaps = 18/270 (6%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                       + +   A + V +S   +   ++    +   N     N           
Sbjct: 784  PYRMQPQDLNRLYVRNNAGKMVPVSAFATGHWAVGSPKLERYNAFPSINLWGEPAPGHST 843

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI--- 684
              A + + +   K    I    T  + +                 ++ +    +I++   
Sbjct: 844  GEAMSLMEDFAAKLPQGIGFDWTGLSYQERMATSQG--------AILYAFSIFVIFLCVA 895

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  L L +   +   +  G   ++      LT +G S  + +++   +
Sbjct: 896  ALYESWTIPIVNMLMLPLGVLGAIVATSARGFPNDVYFQIGFLTTLGLSTKNAILIIQFI 955

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPM 801
            ++            +    ++       + TS+A F  VLP+      G   + +    +
Sbjct: 956  KE---RMGHGEGLIEATLGAVKTRFRPVMMTSLAFFFGVLPLAIANGAGAGAMNAIGTAV 1012

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G++ A    + I  P+   +     K A
Sbjct: 1013 CGGMLSATFIDL-IFIPLFFVLASRLFKQA 1041


>gi|134098600|ref|YP_001104261.1| preprotein translocase subunit SecF [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911223|emb|CAM01336.1| preprotein translocase subunit SecF [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 405

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 139/314 (44%), Gaps = 15/314 (4%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA---NR 587
             L     A   +  R        L  +  +  +   G N GIDF+GG ++ + A   N 
Sbjct: 18  HRLYTGTGAFDIVGKRMRWYVSLGLLVLVCVAAMALKGFNLGIDFEGGTKIQMPAAGANG 77

Query: 588 PVDLSVVRSNL-ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           P+    V ++  E++     + Q      N  ++++ +         V   +   +  + 
Sbjct: 78  PISTEQVETSFREAVGRPAETVQLVGTGGNQSIQIRTESLSVDEVGEVKRTLFNDLQPVD 137

Query: 647 ----PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
               P     +   V      E+ ++ ++ + +  + + I++   F+ + A+ A+  L+ 
Sbjct: 138 GQGRPSQQAISDSAVSGTWGGEITKQAVIALAVFIVLVTIFLTFYFERWMAVAALIALVH 197

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDL 760
           D+  T G +A+ G E     V  +LT++G+S+ D VVV+D++++N +  L  T  ++ + 
Sbjct: 198 DVVVTAGIYAIIGFEVTPATVIGLLTILGFSLYDTVVVFDKVKENTRGLLGLTRRTYGEA 257

Query: 761 IDKSINETLGRSVYTSMAA-----FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            + ++N+TL RS+ TS+ A      + V+   V G  V+   A+    G++    SSI +
Sbjct: 258 ANLAVNQTLMRSINTSIIALLPVLGLLVVGAGVLGVGVLRDLALVQMVGMIAGVVSSILL 317

Query: 816 AAPILLFIYDWRAK 829
           A P+L+       K
Sbjct: 318 ATPVLVDFKMRDPK 331


>gi|109900098|ref|YP_663353.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Pseudoalteromonas atlantica T6c]
 gi|109702379|gb|ABG42299.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudoalteromonas atlantica T6c]
          Length = 1053

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/684 (11%), Positives = 189/684 (27%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+   +        + ++P+  P                     +
Sbjct: 9   RPVFAWVISIIIMLTGIASIM-----SLPIAQYPTVAPPVI---------SVSTTYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + L         S       + ++F +    +    +V   +Q 
Sbjct: 55  AETVENSVTQILEQQLTGLDGLLYFSSSSTSDGSASVNVTFEEGTDADFAQVQVQNKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    +   +  T      ++++        + A + S  I     D +   +   
Sbjct: 115 VTSRLPESVQSQGVTVTKSNTDFLLVTAVYDTTDKASAFDISDYISSSMEDSLARIDGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L       + ++      N        G     D+     
Sbjct: 175 DTRVFGSQ-YAMRIWLDPTKLAAYELMPSDITTALAAQNIQVPAGKIGAVPSLDNQELNA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I   +             +           
Sbjct: 234 TVTAQSML-------------ETPDQFRDIILKSDASGASVRLGDVARVEIGSESYDAIP 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +          +   T        A L               +      S S 
Sbjct: 281 RLNGHPASGIAVMLTPGANALDTATRVKDKVAELALNLPEGYEVTFPRDSTDFIKISISE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV++V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++ GIV
Sbjct: 341 VVQTLAEAVVLVVLVMWLFLQNWRATLIPAIAVPVVLLGTFGVLAAFGFSINTLTMFGIV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    R+   S   +     S     +    +      + + FF
Sbjct: 401 LSIGLLVDDAIVVVENVERLMREKNLSPRDATIESMSEISGALIGIAVVLSAVFLPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLS 529
           GG      + F+I +  S+ +S+  A+++   +                     +     
Sbjct: 461 GGSTGVIYKQFSIAIVSSMTLSVIVALTLSPTLCASFLTHKEHSSKGKGFFARFNRMFDK 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R   W +G  ++  +  + ++         + +G I   V      
Sbjct: 521 LTASYTSQVGKIITRKVRWVLGYGVIIVVLGLLVVRMPTGFLPQEDQGSIMFQVNMPVGA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +S  R   E ++   +  ++ D ++ F +      G           +           
Sbjct: 581 SISRTRDVSEQVEQYLLENESEDIQRVFSISGFNFSGSGQNAGMGFVSLTPWDDRTEDDQ 640

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
           +         K    +    I  +
Sbjct: 641 SADALIGRMNKNLSTIRDASIFAL 664



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 95/248 (38%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +  +     +++     ++    ++   +P 
Sbjct: 261 VRLGDVARVEIGSESYDAIPRLNGHPASGIAVMLTPGANALDTATRVKDKVAELALNLPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + +++ +W+  + W   L     + + +  T
Sbjct: 321 GYEVTFPRDSTDFIKISISEVVQTLAEAVVLVVLVMWLFLQNWRATLIPAIAVPVVLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A FG   N   +  ++  IG  V+D +VV + +     +   ++S RD   +S++E
Sbjct: 381 FGVLAAFGFSINTLTMFGIVLSIGLLVDDAIVVVENV--ERLMREKNLSPRDATIESMSE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      LPMA +GGS       F+I +   + ++   ++ ++  +     
Sbjct: 439 ISGALIGIAVVLSAVFLPMAFFGGSTGVIYKQFSIAIVSSMTLSVIVALTLSPTLCASFL 498

Query: 825 DWRAKNAR 832
             +  +++
Sbjct: 499 THKEHSSK 506



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 78/223 (34%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                  ++Q      V+  + +  +++ + E+           +  +      +  ++  
Sbjct: 821  NGIASYQIQGSAASGVSSGQAMTELERLVQEVGQGKLSFAWSGLSYQEKLSSGQSTMLYA 880

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I   +  L    +   W   L  I  + L +        L G+E ++    A+LT IG +
Sbjct: 881  ISILVVFLALAALYESWSVPLSVILVIPLGVVGAALASTLRGLENDIYFQVALLTTIGLA 940

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ +   +    Y   +S      ++    L   + TS+A    +LP+A+    G
Sbjct: 941  SKNAILIVE-FAE--ASYQKGMSLVGSAVEAAKLRLRPIIMTSLAFMFGILPLAISSGAG 997

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             +   S    +  G + A    IF      + I    +K   +
Sbjct: 998  ANSRISIGTGILGGTLTATIFGIFFVPLFFVIIRGIFSKRRPV 1040


>gi|218562024|ref|YP_002343803.1| inner membrane efflux transporter CmeB [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|112359730|emb|CAL34516.1| inner membrane efflux transporter CmeB (multidrug efflux system
           CmeABC) [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284925637|gb|ADC27989.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni IA3902]
 gi|308072543|dbj|BAJ21894.1| inner membrane efflux transporter CmeB [Campylobacter jejuni]
          Length = 1040

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/682 (10%), Positives = 181/682 (26%), Gaps = 36/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---KMKSIDINPLSRFFL 533
             G  G   R FA+T+ +S+ IS F A+++  ++    +R       K +        + 
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                A      +     + I   +          +   +  +    L +        S 
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPSSLVPEEDQGLMIGIINLPSASA 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +  +          +G K+ +  + +    S  +     M            +   
Sbjct: 582 LHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLKDWKDRNVSADE 641

Query: 654 TEIVGPKISRELIRKGIVGVII 675
             +   K          + + +
Sbjct: 642 IAMELNKKFAFDRNASSIFIGL 663



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|319940932|ref|ZP_08015270.1| hydrophobe/amphiphile efflux-1 family transporter [Sutterella
           wadsworthensis 3_1_45B]
 gi|319805648|gb|EFW02436.1| hydrophobe/amphiphile efflux-1 family transporter [Sutterella
           wadsworthensis 3_1_45B]
          Length = 1033

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 92/684 (13%), Positives = 203/684 (29%), Gaps = 35/684 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L   I   GL+      L    L ++P+  P +                +  
Sbjct: 8   RRPIFATVLSLFIVLSGLIA-----LRVLPLSQYPNITPPSVR---------VSATYDGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           + + +   +    ++  S ++       S+R   +  I   F       +   ++   ++
Sbjct: 54  DAETIARTVAQPIEDQLSGIEGLLYFTTSIRSSGDMAIQCVFDVGTNPNDAMLEINNRVR 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L    +   +      E  +++           A + +       +D++      
Sbjct: 114 TAERRLPAKVRDQGVSVRKRSEDELLMMALYSPDKSMTASDMADYANLNIVDELKRLPGI 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   +   +    DP R+ +L  T   +       N        G           
Sbjct: 174 GDVSVFGNVQSAMRIWLDPDRMSKLGVTVKDVDNAVTAQNAQHAVGRVGTSPTLPEQQLF 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +    ++             P     +V  S    G  R  ++    +GK        
Sbjct: 234 YKITTPGQL-----------LTPDQFAGIVVKSDGPNGLVRLRDIATTEVGKRSYEFRVD 282

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                 V         A      ++  A  +  + +          +          S +
Sbjct: 283 MNGQPGVNIGVYLQTGANAMAAASVVKAR-ITELAQQFPKGHLDYTITNDTTVFVGASLN 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LVL+V+F+ +   +  L+   ++ +++I T+A L L G +L   ++  +
Sbjct: 342 EVYRTLMEAGILVLLVVFVFLQSWRATLIPMLAVPVSLIGTMAGLWLCGFSLNTLTLFAM 401

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVV 476
            L IG+ VD  I+V E +      +  S + +          A   I        I    
Sbjct: 402 TLAIGIVVDDAIVVLENVERLMRTEKLSPYDASIKAMKEVSGALVAIVLVLSAVFIPVAF 461

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           L    G   R F++T+ ++++IS F A+++  A+   +++    K +          +  
Sbjct: 462 LGGIAGELYRQFSVTVAIAVVISGFVALTLTPALCAILLKPTGDKPVSKPFRLFNQGLAA 521

Query: 537 CIAIQFMRAR----FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    R           IL ++C                K    +  +A +  + S
Sbjct: 522 FTMAFLQVVRAALKHRIASALILIAVCIGGWQLLQITPTSFIPKEDQGVVRMAVQLPEGS 581

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                 E  +      Q+ DG +N +  + +    S  +      + +         T  
Sbjct: 582 AFPRTEEVAEGFLKKIQSLDGVQNVVTMMGFDTLGSDIKANAATFILQLKHWNERQQTAD 641

Query: 653 NTEIVGPKISRELIRKGIVGVIIS 676
           + +    K  RE      + V+ +
Sbjct: 642 DYQQQLTKWLRESPDARGIAVLPA 665



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 82/265 (30%), Gaps = 14/265 (5%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                G   +   +   V +S + +         ++  N       +           A  
Sbjct: 778  PSDIGRASVRASSGEMVPISTLVTWERVSGPDSLTRMNGYLGSQIMGAAIQGVSSGEAIR 837

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
             V E  +  +         Q   I      + +            + M + +   + +W 
Sbjct: 838  IVEETARDYLPPG-----YQVEWIGQAYHEKRIGASSATAFGFGLLVMFLILAALYERWS 892

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  +  +       +    L G   ++     +L L+G +  + +++ +      K+ 
Sbjct: 893  LPIAVVLAVPYAFLGAMTAVWLRGTANDIYFQIGLLVLVGLTAKNAILIVE--YAEQKME 950

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
                   D   ++    L   + TS+A  + V PM +    G +   S    +  G++ A
Sbjct: 951  EDGKGPFDAAIEAAGLRLRPILMTSLAFILGVTPMLLATGAGSAARHSMGTGVFGGMLAA 1010

Query: 809  AS-SSIFIAAPILLFIYDWRAKNAR 832
               S+IF+  P+    +  + K  R
Sbjct: 1011 TFISTIFV--PVFFTWFAKKRKAKR 1033



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T+    L G   N   + A+   IG  V+D +VV + +    
Sbjct: 364 SWRATLIPMLAVPVSLIGTMAGLWLCGFSLNTLTLFAMTLAIGIVVDDAIVVLENV--ER 421

Query: 749 KLYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
            + T  +S  D   K++ E    L   V    A FI V  +    G +   F++ +A  +
Sbjct: 422 LMRTEKLSPYDASIKAMKEVSGALVAIVLVLSAVFIPVAFLGGIAGELYRQFSVTVAIAV 481

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++   ++ +   +   +  
Sbjct: 482 VISGFVALTLTPALCAILLK 501


>gi|254780082|ref|YP_003058189.1| preprotein translocase subunit SecD [Helicobacter pylori B38]
 gi|254001995|emb|CAX30254.1| Protein-export membrane protein SecD [Helicobacter pylori B38]
          Length = 525

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 277/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++  +  +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFVCVLLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALL----- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L +       +       S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 106 -----LELQGHSQFEIKKEAGFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A++ G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALIGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIIGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ +I   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALIGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+ + +  +G   I  FA+    GI+ +  ++I
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAI 495


>gi|240126162|ref|ZP_04739048.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           SK-92-679]
 gi|268684751|ref|ZP_06151613.1| drug efflux protein [Neisseria gonorrhoeae SK-92-679]
 gi|268625035|gb|EEZ57435.1| drug efflux protein [Neisseria gonorrhoeae SK-92-679]
          Length = 1067

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 162/570 (28%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H +     
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HAIYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              + G +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEGSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNVVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNIYLKDVAKVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A+L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  ++
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMI 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFDSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 100/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ +  G+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAAGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 95/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNIYLKDVAKVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMILVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+   +   FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|187926715|ref|YP_001893060.1| acriflavin resistance protein [Ralstonia pickettii 12J]
 gi|241665047|ref|YP_002983406.1| acriflavin resistance protein [Ralstonia pickettii 12D]
 gi|187728469|gb|ACD29633.1| acriflavin resistance protein [Ralstonia pickettii 12J]
 gi|240867074|gb|ACS64734.1| acriflavin resistance protein [Ralstonia pickettii 12D]
          Length = 1033

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 74/614 (12%), Positives = 189/614 (30%), Gaps = 47/614 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R     ++L+ ++   GL+           +  FP                   +   L 
Sbjct: 9   RKPIPPILLFILMTVAGLVS-----FKMLSIQNFPDIDFPA-----------VSITASLP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 +   +    ++  + +        ++    +   + F   +  +   + V   +
Sbjct: 53  GATPTQMETEVTRKIEDSVASIGAIKHITSTVNDGSSTTMVEFELEKDVQEAVNDVRDAV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             + ++L  D ++ ++   T   + ++    +       A + S  +      ++     
Sbjct: 113 SRIRAQLPSDVQEPVISRVTFAGMPVLTYAVDAPD--MDAEDLSWFVDNTISKRLLSVHG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +      +  ++  + DP RL+ L  T A +S           G    +     +   
Sbjct: 171 VAKVTRQGGVDREVRVQLDPVRLQALNVTAADISAQVRGVQQEAPGGRGNIGGQEQAVRT 230

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+   E+                      +       RR       ++    A    
Sbjct: 231 LGTVKSAREL--------------------AQMDIPLSDGRRIRLSDVADVRDTAAEPRQ 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L    +           S     +      A LR     + +       V     + 
Sbjct: 271 MALLDGKPVVSFQVFRSRGASEISVAKGVREALARLRTERPNVHVTE-VYNMVKPVSDAY 329

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +         A L ++V+++ +   +   V+  ++ L++I T A +++LG TL   ++  
Sbjct: 330 AASMHALYEGAILAVLVVWLFLRDWRATFVSAVALPLSIIPTFAAMNMLGFTLNGITLLA 389

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD  I+  E I    R  +  + +           +  +++T +   +   F
Sbjct: 390 LTLVVGILVDDAIVEVENIVRHLRNGKPPYEAALEAAQEIGLAVVATSLTLVAVFLPTAF 449

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            G   G   + F  T  L++L S+  A  +   M  ++++ +   + D   + R+     
Sbjct: 450 MGGISGKFFKQFGWTASLAVLASLLVARLLTPMMAAYLLKPQDEPNRDGWIMVRYLRAAR 509

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I   +          +       +  T            +Q+ V +     ++  R 
Sbjct: 510 WCLIHPWKTSAMAAVFFAVSVAIIGLIPATFLPPEDWA---QLQMTVESPPGSTIAQTRD 566

Query: 597 NLESLQIGDISFQN 610
           N+E ++   +  ++
Sbjct: 567 NVERVRKIVMQHKD 580



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 56/161 (34%), Gaps = 6/161 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +A+L+       W     +   L L I  T     + G   N   + A+  ++G  V
Sbjct: 339 GAILAVLVVWLFLRDWRATFVSAVALPLSIIPTFAAMNMLGFTLNGITLLALTLVVGILV 398

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +V  + +   ++         +   ++  E     V TS+      LP A  GG   
Sbjct: 399 DDAIVEVENI---VRHLRNGKPPYEAALEAAQEIGLAVVATSLTLVAVFLPTAFMGGISG 455

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                F    +  ++ +   +  +   +  ++   + +  R
Sbjct: 456 KFFKQFGWTASLAVLASLLVARLLTPMMAAYLLKPQDEPNR 496



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 61/146 (41%), Gaps = 4/146 (2%)

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL 720
            +EL     + ++   + +   + + F  +   +  +  L L +    G  ALFG   +L
Sbjct: 838 MQELFSSFFLAMLAGVLCVYAVLVLLFHDFTQPVTILAALPLSVGGAFGLLALFGFSLSL 897

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            A+  +L L+G    + +++ +     +      +S  + I  + ++     V T++A  
Sbjct: 898 PALIGLLMLMGIVTKNSILLVE--YAIVARRDLGMSRTEAIIDACHKRARPIVMTTVAMT 955

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIV 806
             ++PMA  G      F  PMA  ++
Sbjct: 956 AGMVPMA-LGLEGDAGFRAPMAVAVI 980


>gi|254784965|ref|YP_003072393.1| RND transporter HAE1/HME family, permease [Teredinibacter turnerae
           T7901]
 gi|237686763|gb|ACR14027.1| RND transporter, HAE1/HME family, permease protein [Teredinibacter
           turnerae T7901]
          Length = 1032

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/646 (12%), Positives = 182/646 (28%), Gaps = 44/646 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   G+L        +  L  +P   P              +      
Sbjct: 9   KRPVFASVISFLLVAFGILA-----FERLPLREYPDIDPPVV---------SINTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + ++       S +  ++ I + F   R  E+  + +   +  
Sbjct: 55  AASVVETRITQLIEDRIAGIEGIKFIQSSSQDGRSSIDVEFDIGRDIESATNDIRARVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +      E  I+              E +    R  ID+    +   
Sbjct: 115 ILDDLPQEADIPDVRKVDSNEDVIMWLNLTSPN--MSVPELTDYAERYLIDRFSTVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D  +L     T A +       N             + +   Q 
Sbjct: 173 RARVGGSQRYAMRVWVDRVQLAAHKLTVADIESALRSENVELPAGSVESDERQFTIRTQ- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 + K         
Sbjct: 232 ------------------RSFRSADDFSQLVLGRGEDGHLIRLRDVARVEKGTEESRTFF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S ++  +       A  LA  +               +      + + 
Sbjct: 274 RGNGEAMVGIGVSKQSTANTIDVARGAKALAERINQNLPNGMEIRQSYDSSVFIEQAVAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV++V+++ +   +  LV   ++ +++I T  LL+L G T+ L ++  +V
Sbjct: 334 VYKTLAIAIVLVILVIYVFLGSARAMLVPAVTVPVSLIATFILLALWGFTVNLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E I       N+S   +   G  +    +  + +  +     +   
Sbjct: 394 LAIGLVVDDAIVVLENIHRRMETYNESALVAAYRGTRQVGFAVVATTLVLVAVFAPIAVL 453

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFF 532
            G   R    FA+TM  +++ S   A+++   +   +        K ++++D        
Sbjct: 454 QGDLGRLFSEFALTMSAAVVFSSLVALTLSAVLASKVLKKSDNNNKILRAVDRTFARMQV 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                I              ++L   C   +          + +G   + V         
Sbjct: 514 SYSGAINRCVTNPGKVLFAFALLIVGCVFMVSRIPSEFAPKEDRGAFFVLVNGPEGASYQ 573

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
            ++  ++ ++   +        +  LVR     G   +    + +V
Sbjct: 574 YMKDYMDEIEQRMLPLAESGEAQRVLVRAPRAWGSISSFNSGIVIV 619



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 66/172 (38%), Gaps = 9/172 (5%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVA 724
               +    +  + M + +  +F+ Y +   +    + +    G F L      FNL +  
Sbjct: 855  DSMLFAFGLGILVMFLVLAAQFESYIS-PMVIMFTVPLAVAGGLFGLWVTAGTFNLYSQI 913

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ LIG +  + +++ +      +L     S R+ + ++    L   V TS+   +  +
Sbjct: 914  GLIMLIGLATKNGILIVEFAN---QLRDEGQSIREAVLEASAVRLRPIVMTSLTTVVGSI 970

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            P+ +    G        I + FG+  A   S+F+   +   +  +     ++
Sbjct: 971  PLILSFGAGAETRQVLGITLFFGVTAATVFSLFLIPVMYDLLAKYAGSPGKV 1022



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 94/247 (38%), Gaps = 12/247 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++  ++ G    + F       +        S A T  +    K + E +  +     E
Sbjct: 257 RDVARVEKGTEESRTFFRGNGEAMVGIGVSKQSTANTIDVARGAKALAERINQNLPNGME 316

Query: 656 IVGPKISRELIRKGI------VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           I     S   I + +      + + I  + ++IY+         L    T+ + +  T  
Sbjct: 317 IRQSYDSSVFIEQAVAEVYKTLAIAIVLVILVIYV-FLGSARAMLVPAVTVPVSLIATFI 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             AL+G   NL  + A++  IG  V+D +VV + + + M+ Y    S      +   +  
Sbjct: 376 LLALWGFTVNLLTLLALVLAIGLVVDDAIVVLENIHRRMETYN--ESALVAAYRGTRQVG 433

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              V T++       P+AV  G +      FA+ M+  +V ++  ++ ++A +   +   
Sbjct: 434 FAVVATTLVLVAVFAPIAVLQGDLGRLFSEFALTMSAAVVFSSLVALTLSAVLASKVLKK 493

Query: 827 RAKNARI 833
              N +I
Sbjct: 494 SDNNNKI 500



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 70/527 (13%), Positives = 160/527 (30%), Gaps = 61/527 (11%)

Query: 7    LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             V+    +  +G +           + R PS               G+  VL    +   
Sbjct: 528  KVLFAFALLIVGCVFM---------VSRIPSEFAPKEDR-------GAFFVLVNGPEGAS 571

Query: 67   NGFLQMYSDELRSFLKKEGIGVF-------------SMRQIQNKITLSFADSRFKENIAD 113
              +++ Y DE+   +                     S+    + I +   +   +   A 
Sbjct: 572  YQYMKDYMDEIEQRMLPLAESGEAQRVLVRAPRAWGSISSFNSGIVIVTLNGWDQRRSAQ 631

Query: 114  KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            ++   +    + L    +   ++            Q  I       + Q  +I+ ++I +
Sbjct: 632  EIMDEVNTKLADLP-GVRAFSVMRQGIGSRVAKPVQFVIGGGTYEELAQWQDILLEKIAE 690

Query: 174  IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP---NNSKKGFMFGV 230
                   +          Q+    D +R  +L  +   +                   G 
Sbjct: 691  ENPKLLGVDTDYKDS-NPQIQVVIDYARAAELGVSVQTIGRTLESMLGRKRVTTFIDEGE 749

Query: 231  RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
             +    +G +Y      +I+ I++    +         V    F    +   +  TR   
Sbjct: 750  EYDVLIEGERYQNNSPTDINNIYVRSDRSRELIPLANLVKLEEFAVATSLNRYNRTRA-- 807

Query: 291  GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                                   + +A ++  +++  A      L    LP K+ I  + 
Sbjct: 808  ----------------------ITLEADLAEGYSLGEALEYLEDLVKRELPAKVAIDYKG 845

Query: 351  NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                   S         +   ++ +VL          +V  F++ L V   L  L +   
Sbjct: 846  QSQDFKFSGDSMLFAFGLGILVMFLVLAAQFESYISPMVIMFTVPLAVAGGLFGLWVTAG 905

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
            T  L S  G+++ IGLA  + IL+ E   +   + QS+  ++    +     I  +++T 
Sbjct: 906  TFNLYSQIGLIMLIGLATKNGILIVEFANQLRDEGQSIREAVLEASAVRLRPIVMTSLTT 965

Query: 471  LIATVVL---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            ++ ++ L   F  G    +   IT+   +  +   ++ ++  M   +
Sbjct: 966  VVGSIPLILSFGAGAETRQVLGITLFFGVTAATVFSLFLIPVMYDLL 1012


>gi|78355448|ref|YP_386897.1| hydrophobe/amphiphile efflux-1 HAE1 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217853|gb|ABB37202.1| Hydrophobe/amphiphile efflux-1 HAE1 [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 1055

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 66/586 (11%), Positives = 161/586 (27%), Gaps = 41/586 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+           + ++P   P               +V+    
Sbjct: 9   RPRLAMVISLVITIAGLVTMF-----TIPVAQYPQINPPE-------------IVVSAAY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L    +  + S +   EG+   S     +    +T++F      +     V  
Sbjct: 51  PGASAQVLADTVAAPIESQVNGVEGMVYMSSSSDNSGNYSLTVTFGPDVDPDIAQVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  + K+  +   ++    + +      Q    ++  S  +     D +   
Sbjct: 111 RVALAEPVLPTEVKQQGVSIRSKSSNMLAVYSFISPQGSHDSLYLSNYVSINIKDALTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP R+  L  +  ++       N        G        
Sbjct: 171 NGVSDVTVFGAKDYSMRIWLDPDRMAALKVSPEEVIEAVGSQNIQAAAGSVGSAPSSPDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V  K  ++ +              +    +                 +       
Sbjct: 231 QLTFTVRAKGRLTTVE-------------EFRNIVIRSNDTGGLLRLGDVARVELGAKDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T+E        L           +          
Sbjct: 278 GTEATFNGHPAIALGVYQSPTANALDTVENLNKELDRLSRFFPEDVEYRLMYDTTDYVRA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T  I   LV+ V ++ +   +  L+   +I ++++ T A+L  LG +    ++
Sbjct: 338 ALWEIILTLLITFALVMGVTYIFLQDLRATLIPTLTIPVSLLGTFAVLMALGYSANTFTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E ++    + +     +      +    +  + +  L   V 
Sbjct: 398 FALILAIGVVVDDAIVVVENVQRIMYEEKLPAPQATIKAMEQVTGPVIATTLVLLAVFVP 457

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFF 532
           + F     G   R FA+T+  S+L+S   A+++  A+    +   +  +   +   +   
Sbjct: 458 IGFISGITGNIFRQFAVTISTSVLLSSVNALTLSPALCAILLRPVRMHQHGPLAVFNTVL 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                  +         + IS +  +      +    +    F   
Sbjct: 518 NKCRNSFVSGTAWLIRKMVISGVLFLAVAAGTYYMMNSIHTSFVPD 563



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 50/447 (11%), Positives = 135/447 (30%), Gaps = 25/447 (5%)

Query: 401  TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS-VFCSLDMGFSRA 459
              A +  +     +  I G     G   +S +L+   +  + R + S    +L    + A
Sbjct: 591  IGAQMETMDGMQEVLGINGFSFLSGRGANSGLLIANLLPWDERSDASLHATALQAKMTVA 650

Query: 460  YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            ++ I  +N   L+   +    G G   G    +  +   S     + VR+M+I      +
Sbjct: 651  FNAIPYANTRVLLPPAI---PGLGMAGGIDFRVLATQGQSPQELAAAVRSMLIAANSDPR 707

Query: 520  MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            + +   +  +    +   +      +    V          +   + +  N  +     +
Sbjct: 708  IMAAFSSYSANVPQVFIKLDRAKAESMGVAVSNVFATLQTQLGSRYINDFNM-LGRAFQV 766

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL---- 635
             +    +    +  +         G +           ++  Q     +   +  +    
Sbjct: 767  NIQAENDYRNAVDDISRLHVRSGDGHMVPLGSIATIETVLGPQSYSRYNQFPSAQIMAIP 826

Query: 636  -------EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-- 686
                   + +               T     +  +E   +G  G+++    +  Y+++  
Sbjct: 827  VPGFSSGQAMDLFEELADKTLPEGYTYEWSGQSYQEKQTQGQTGILVGLALLFGYLFLVA 886

Query: 687  -RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                W   L  + +++      L    + G+  ++ A   ++ L+G +  + +++ +  R
Sbjct: 887  QYESWTTPLPVMLSILFASGGALAGLMIAGMPLSIYAQIGLVLLVGLAAKNAILIVEFSR 946

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
                      S  +             + T+ +  + V PM +    G     S    + 
Sbjct: 947  D---KRLEGASIMEAATTGARIRFRAVLMTAFSFILGVFPMVIAQGAGAGSRQSIGTTVF 1003

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++ +    IF   P+       R +
Sbjct: 1004 AGMLASTMVGIFFIPPLYAAFETMRTR 1030



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +               L   Q    +++     L     +++   P     
Sbjct: 266 DVARVELGAKDYGTEATFNGHPAIALGVYQSPTANALDTVENLNKELDRLSRFFPEDVEY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                     R  + + I+ ++I+   ++   +I        L    T+ + +  T    
Sbjct: 326 RLMYDTTDYVRAALWEIILTLLITFALVMGVTYIFLQDLRATLIPTLTIPVSLLGTFAVL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N   + A++  IG  V+D +VV + +     +Y   +       K++ +  G 
Sbjct: 386 MALGYSANTFTLFALILAIGVVVDDAIVVVENV--QRIMYEEKLPAPQATIKAMEQVTGP 443

Query: 772 SVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + T++      +P+  + G  G++   FA+ ++  +++++ +++ ++  +   +  
Sbjct: 444 VIATTLVLLAVFVPIGFISGITGNIFRQFAVTISTSVLLSSVNALTLSPALCAILLR 500


>gi|332991968|gb|AEF02023.1| RND multidrug efflux transporter MexF [Alteromonas sp. SN2]
          Length = 1040

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/698 (11%), Positives = 192/698 (27%), Gaps = 50/698 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  +I   G +        Q  +  +P  +P   +                +
Sbjct: 9   RRPIFAGVLSLLIFIGGAIAVW-----QLPITEYPEVVPPTVVVT-------------AN 50

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   + +  +  L   +   E +   S +   +    +T++FA     ++    V 
Sbjct: 51  YPGANPKVIAETVATPLEQEINGVEDMIYMSSQATSDGRMTLTITFAIGTDPDDATTLVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  + ++  +VT        ++            +  S    +   D++  
Sbjct: 111 NRVNRATPRLPQEVQRLGIVTEKSSPDLTMVVHLTSPDKRYDMLYLSNYADQFVKDELAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   Q          +    DP++L  L      +       N        G +    +
Sbjct: 171 VEGVGQVRLFGAGEYSMRVWLDPNKLASLQMNPGDVVTAISEQNQQAAAGSLGAQPT-GT 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q L+  +  +                 +    I       +         I      
Sbjct: 230 SEFQLLINVRGRLEDES-------------EFENIIVKTGDNGQITRLKDVARIELGADY 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L                +     +      A L           +         
Sbjct: 277 YTLRSLLNNNPAAALPIFQAPGSNAIQISDDVRARMAELEKMFPEGLEYDIVYDPTVFVR 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           GS      T      LV++V+ + +   +  ++   ++ ++++ T A + L+G +L   S
Sbjct: 337 GSIEAVVNTLFEAVLLVVLVVVLFLQTWRASIIPLVAVPISLVGTFAFMQLMGFSLNALS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +       ++ F +           I  + +      + 
Sbjct: 397 LFGLVLAIGIVVDDAIVVVENVERNIADGKAPFDATVQAMKEVTGPIIATTLVLAAVFIP 456

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIF----------IIRYKKMKSI 523
             F     G   + FA+T+ +S  IS   ++++  A+              +     K  
Sbjct: 457 TAFMSGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKPHGQSKDWLSRGMDKLF 516

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                + F  + D  A ++  A    +  S +  +    LL      +     G +    
Sbjct: 517 GRFVFTPFNKMFDRGAKKYTGAVGGLIRKSGVVVVLYAGLLGLTYFQFANTPTGYVPPQD 576

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                    +  ++        +   +    ++  V                      + 
Sbjct: 577 KQYLIAFAQLPNASSLDRTEEVVREMSRIAMEHPGVSDAVAFPGLNINGFTNSPSSGVLF 636

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +   + + +  +        + +    +  + +A+ 
Sbjct: 637 TPLKPFSERQSPELSAGAIAMQLNQQFGSIKGAYVAIF 674



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 7/142 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    ++G + N+     ++ L+G +  + +++ +  ++  
Sbjct: 902  SLRLPLAIILIVPMTLLSALIGVVIYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             L    +     I ++    L   + TS+A  + VLPM +  G+        M   +   
Sbjct: 960  -LQDKGMDALSAIKEASKLRLRPILMTSIAFIMGVLPMVLSTGAG-AEMRQAMGVAVFSG 1017

Query: 809  AS-SSIF--IAAPILLFIYDWR 827
                ++F  I  P+  ++    
Sbjct: 1018 MIGVTVFGLILTPVFYYLLKRN 1039



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 364 WRASIIPLVAVPISLVGTFAFMQLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIA 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV 806
                 +  D   +++ E  G  + T++      +P A   G        FA+     I 
Sbjct: 424 D---GKAPFDATVQAMKEVTGPIIATTLVLAAVFIPTAFMSGLTGQFYKQFALT----IT 476

Query: 807 VAASSS 812
           ++   S
Sbjct: 477 ISTFIS 482


>gi|322833667|ref|YP_004213694.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
 gi|321168868|gb|ADW74567.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
          Length = 1031

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/683 (10%), Positives = 185/683 (27%), Gaps = 47/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + V++  +   IG +      L    ++++P   P               + +   
Sbjct: 7   KRPRFAVVIALVTALIGAVA-----LKVIPVEQYPDITPPV-------------VSVSAI 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   + +  +  + + +     +   S     N    +T++FA     +  A ++ 
Sbjct: 49  YPGASARDVAESVAAPIEAQVNGVSNMLYMSSNSGNNGSYTLTITFASGTDPDTAAVEIQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+S+L  +     +    +    ++       +     +  S     Q  D +  
Sbjct: 109 NRISQVSSRLPPEVLNTGVSVRKQASNILMGISLLSPENTHDMLFISNFASIQLRDALAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    DP ++  L  ++ ++S      N        G       
Sbjct: 169 VDGVGDVRVFGSRDYSMRIWLDPRKMEALDVSSMEISAAIQNQNVQAAAGQIGASPSPSM 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +     +S                     I    +            I      
Sbjct: 229 QQQTLTISGAGRLS-------------SPEAFGNIIVRKNVHGGTVRLRDVARIELGAQD 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +            +             ++  +     
Sbjct: 276 YQVNATLNQTPSAFLSVYPSPGANALNVANAVREEMSRQARNFPDDLTYEIKFDSTRFVS 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL ++++ +   +   +   +I ++++ T A+L   G +    S
Sbjct: 336 ATLDEIAVSLVLTFVVVLSIVYLFLQSVRATFIVALTIPVSLLGTFAVLYAFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E I     ++ S     +      +    +  + +  L   
Sbjct: 396 LFAIILALTVVVDDAIVVVENIEHLMMEDPSLGRVAATRKALKQIAGPVIATTVVLLAVF 455

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSR 530
           V +       G   R FA+T+  ++++S   A+++  A+    +       +   +  ++
Sbjct: 456 VPIAVLPGITGALYRQFAVTLSAAVVLSSINALTLTPALCATLLKPRPAKPARVFHWFNQ 515

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFS-----ICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  + ++  R        S++        C              + +G   + V  
Sbjct: 516 GLDAVRDVYVKAARGISKSAFTSVVTVLVIGGACVWGYSSLPKSFLPDEDQGYFFVNVQL 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                L+   + L  +Q         +             G S      + ++K      
Sbjct: 576 PDGASLNRTDAVLGQMQQIMQKDPAVEDVIAISGFSLLSGGSSPNAAFGIVLLKPWGDRD 635

Query: 646 VPLSTIQNTEIVGPKISRELIRK 668
                I   +     I   +IR 
Sbjct: 636 SVDQVIGRLQPAMSGIPSAMIRA 658



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/239 (10%), Positives = 74/239 (30%), Gaps = 13/239 (5%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
               +          Q        +         S      +E +  +             
Sbjct: 796  MVEMTPSLGAPFITQYNQFPSLAISGSAAPGISSGEAMAQMEHILSEKLPAGYGYEWTGM 855

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +   +   + I      ++ +    L  +     W   L  + ++I  +   +G   + 
Sbjct: 856  SLQEIQAGGQAILIYAAALLFAY---LFLVAQYESWSIPLAVMISVIFAVFGAIGGLHMA 912

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            G+  ++ A   ++ LIG +  + +++  + + R+         S  +       +     
Sbjct: 913  GLSNDVYAQIGMVLLIGLAAKNAILIVEFSKARRE-----EGASVSEAAQDGAKQRFRAV 967

Query: 773  VYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + T+++  + VLP+    G   +      + +  G++++ +  I     + L I   R 
Sbjct: 968  MMTAISFILGVLPLVMASGAGAMSRHIIGVTVFSGMLLSTTVGILFIPALYLHIQRLRE 1026



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 89/246 (36%), Gaps = 5/246 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L +      +  N        V              V E + ++        T 
Sbjct: 265 DVARIELGAQDYQVNATLNQTPSAFLSVYPSPGANALNVANAVREEMSRQARNFPDDLTY 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +        +S  L    +  V+   + + I                T+ + +  T    
Sbjct: 325 EIKFDSTRFVSATLDEIAVSLVLTFVVVLSIVYLFLQSVRATFIVALTIPVSLLGTFAVL 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             FG   N  ++ A++  +   V+D +VV + + +++ +   S+       K++ +  G 
Sbjct: 385 YAFGYSANTLSLFAIILALTVVVDDAIVVVENI-EHLMMEDPSLGRVAATRKALKQIAGP 443

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWR 827
            + T++      +P+AV     G++   FA+ ++  +V+++ +++ +   +    +    
Sbjct: 444 VIATTVVLLAVFVPIAVLPGITGALYRQFAVTLSAAVVLSSINALTLTPALCATLLKPRP 503

Query: 828 AKNARI 833
           AK AR+
Sbjct: 504 AKPARV 509


>gi|157962627|ref|YP_001502661.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           pealeana ATCC 700345]
 gi|157847627|gb|ABV88126.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella pealeana ATCC 700345]
          Length = 1041

 Score =  172 bits (434), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 79/689 (11%), Positives = 193/689 (28%), Gaps = 42/689 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++       P+  ++RFPS  P +          G +L      
Sbjct: 8   RPVFAWVIAILISIAGVIAI-----PKLAVERFPSVAPPSI---------GLYLSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +N  +    +   S +         S       IT++F +    E    ++   ++ 
Sbjct: 54  PQTINDSVVTLIEREISGINGLLYFSSSSDASGSASITVTFENGTDPEMAQVEIQNKIRA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L +  ++  +   T    +++              + S  ++R  +++I       
Sbjct: 114 IEPRLPLAVRQIGITVETTSSNNLMYLGLISPSGDYSEQQLSDYMVRNIVEEIKRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP  L     T   ++      N        G           +
Sbjct: 174 RVQMYGA-EFAMRIWVDPVALTGYNLTMEDVTLAIAEQNVQISPGKVGDSPTSGGQMTVH 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +    + A          +       L   
Sbjct: 233 SLTAQGQL-------------ETPEQFRAIVLRSNIDAGMVLLGDVAKVELGAQNYLFSN 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +   T +      A L+          +          S   
Sbjct: 280 RENGQQSTSAAIQLSPGANAIATSQGIRDRLAELKLAMPSNMDYSITSDAAIFAKISIQK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+      + ++ T A++ L+G ++ + ++ G+V
Sbjct: 340 VIVTLLEAMVLVFLVMYLFLQKIRYTLIPAIVAPIALLGTFAVMWLMGFSINVFTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +             + +      YS +           + + F 
Sbjct: 400 LAIGIIVDDAIVVVENVERVMAETGLPPKAATEQAMKSIYSAVIGITAVLSAVFIPMAFA 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPL 528
               G   + F++ M +SIL S F A+++  A+   +++                + N  
Sbjct: 460 SGSVGTIFQQFSLAMAVSILFSAFLALTLTPALCATLLKPLTEHDHKSVGFFGWFNRNFH 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +    +   +A    R         +L   C              + +G     +     
Sbjct: 520 NFTQKVTAGVAHLVKRTGRVMAVYIVLVVACIYSFTLVPSTFLPEEDQGYFMTSIQLPPD 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             +      +  ++   +  +  D   + L       G   A         ++       
Sbjct: 580 ATVERTMDVVSKMEAFTLGREAVDASMSILGFSFSGTGSGSAFGITTLKDWQQRGGSSTQ 639

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISA 677
             +         ++   I   +   I   
Sbjct: 640 QEVAALSDYLSDLTEGEIFSVLPAAIDGL 668



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 90/244 (36%), Gaps = 6/244 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              V L  V       Q    S +    +            +++A ++ +     ++   
Sbjct: 257 AGMVLLGDVAKVELGAQNYLFSNRENGQQSTSAAIQLSPGANAIATSQGIRDRLAELKLA 316

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
           +P +   +        ++  I+K IV ++ + + + + +++   K  + L       + +
Sbjct: 317 MPSNMDYSITSDAAIFAKISIQKVIVTLLEAMVLVFLVMYLFLQKIRYTLIPAIVAPIAL 376

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T     L G   N+  +  ++  IG  V+D +VV + +     +  T +  +   +++
Sbjct: 377 LGTFAVMWLMGFSINVFTMFGMVLAIGIIVDDAIVVVENV--ERVMAETGLPPKAATEQA 434

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +       +  +       +PMA   GSV      F++ MA  I+ +A  ++ +   +  
Sbjct: 435 MKSIYSAVIGITAVLSAVFIPMAFASGSVGTIFQQFSLAMAVSILFSAFLALTLTPALCA 494

Query: 822 FIYD 825
            +  
Sbjct: 495 TLLK 498



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 59/146 (40%), Gaps = 7/146 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            + +  ++ S + + + +   ++ W   L  I  + L I   +    L G   ++     +
Sbjct: 865  QTVWLLLFSMLVIFLVLAALYESWSIPLAVILVVPLGIIGAIASVMLSGAANDVFFKVGL 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  ++ +       S  D +  +  + L   + TS+A    ++P+
Sbjct: 925  VTIIGLSAKNAILIVEFAKQALAE---GSSLVDSVLLATKQRLRPILMTSLAFSCGIIPL 981

Query: 787  AVWGGSV--IGS-FAIPMAFGIVVAA 809
             +  G    I +     +  G+    
Sbjct: 982  YLASGPSSEIQNSIGTGVLGGMFTGT 1007


>gi|283955790|ref|ZP_06373281.1| inner membrane efflux transporter CmeB (multidrug efflux system
           CmeABC) [Campylobacter jejuni subsp. jejuni 1336]
 gi|283792745|gb|EFC31523.1| inner membrane efflux transporter CmeB (multidrug efflux system
           CmeABC) [Campylobacter jejuni subsp. jejuni 1336]
          Length = 1040

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/682 (10%), Positives = 182/682 (26%), Gaps = 36/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGVI-----GLTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++       +     A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSATLAAISMYSNDGSMSAVDVYNYIALNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNDDGSFLRLKDIADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        I + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIIINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VIKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFIPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---KMKSIDINPLSRFFL 533
             G  G   R FA+T+ +S+ IS F A+++  ++    +R       K +        + 
Sbjct: 462 ISGFVGEIQRQFALTLAISVAISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                       +     + I   +          +   +  +    L +        S 
Sbjct: 522 TSVFSTGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPSSLVPEEDQGLMIGIINLPSASA 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +  +          +G K+ +  + +    S  +     M            +   
Sbjct: 582 LHRTISEVDHISQEVLKTNGIKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSADE 641

Query: 654 TEIVGPKISRELIRKGIVGVII 675
             +   K          + + +
Sbjct: 642 IAMELNKKFAFDRNASSIFIGL 663



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DIADVEIGSQQYSSQGRLNGNDAVPIIINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ I   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVIKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + +       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFIPVSFISGFVGEIQRQFALTLAISVAISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|119484295|ref|ZP_01618912.1| AcrB/AcrD/AcrF family protein [Lyngbya sp. PCC 8106]
 gi|119457769|gb|EAW38892.1| AcrB/AcrD/AcrF family protein [Lyngbya sp. PCC 8106]
          Length = 1057

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 71/585 (12%), Positives = 179/585 (30%), Gaps = 27/585 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L+ ++  +GL+       PQ  +D  P+                  +     
Sbjct: 12  KRPVPTLVLFLILTLVGLMS-----FPQLGIDDTPNVDIPAV---------NITVTQPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L        +++   +  T+SF      +   + V   +  
Sbjct: 58  GPTELETQVTKKVEDSVASLGNIDRLTSTVQDGISTTTVSFILGTDSDRATNDVRNAIAQ 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L +D    ++         ++              E S  + R    ++       
Sbjct: 118 IRQDLPLDINDPVVQRLRFAGGVVITYAVTSP--QRSVEELSDLVDRTISRELLNVPGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++  E +P RL+ L  T  +++      N +  G          S     
Sbjct: 176 QIQREGGVDREIRIELNPDRLQSLGITATQVNDQIRAFNINLPGGRSRFGGTEKSIRTLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +    +    +   +    P +    V   F E+     +    ++            
Sbjct: 236 SAKTVEALRDSPIVLPSGGSIPLSSLANVVDGFSEVRQIARYFEVENSG-------ASDS 288

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +     E      + L+          +   +  +   S   
Sbjct: 289 TEVGEPVVAFSVFRSTGSTLVTVEEGVREAVSELKKTLPDDINLELILTDADSIRDSYQA 348

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + + L +IV+ + +   +  L+   ++ L+++ T  ++ LLG TL   ++  + 
Sbjct: 349 SIDALVLGSFLTVIVVGVFLRNWRPTLITAIALPLSILPTFMVMKLLGYTLNSMTLLALA 408

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I + E I +     ++ F +           +  +  T +   + + F G
Sbjct: 409 LAMGNLVDDAICMMENIDQHVEMGKTPFQAALDASEEIGLAVVATTATIVAVFIPVAFMG 468

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS-RFFLIPDC 537
              G   + F +T+ +S + S   A ++   +   +++ KK K + ++        I   
Sbjct: 469 GVPGQFFQPFGVTVAVSTMFSTLVACTMTPMLGARLLKPKKSKELTVSDYQLAQNRIHPY 528

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     R   + +++        L     +  G+   G   L 
Sbjct: 529 RNLLRFSLRNKVLTLAVAVVFFIGSLQLVPMIPKGLFDSGDTGLS 573



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 47/308 (15%), Positives = 93/308 (30%), Gaps = 14/308 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            +    I +   R+RF G   SI     +  +         +   G I L  LAN     
Sbjct: 209 QIRAFNINLPGGRSRFGGTEKSIRTLGSAKTVEALRDSPIVLPSGGSIPLSSLANVVDGF 268

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S VR      ++ +    +       +V              V E V++ ++E+      
Sbjct: 269 SEVRQIARYFEVENSGASDSTEVGEPVVAFSVFRSTGSTLVTVEEGVREAVSELKKTLPD 328

Query: 652 QNTEIVGPKISRELIRKGIVG----VIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                +    +  +           V+ S + +++       W   L     L L I  T
Sbjct: 329 DINLELILTDADSIRDSYQASIDALVLGSFLTVIVVGVFLRNWRPTLITAIALPLSILPT 388

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N   + A+   +G  V+D + + + +    +      +       +  E
Sbjct: 389 FMVMKLLGYTLNSMTLLALALAMGNLVDDAICMMENI---DQHVEMGKTPFQAALDASEE 445

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V T+       +P+A  GG        F + +A   + +      +A  +   + 
Sbjct: 446 IGLAVVATTATIVAVFIPVAFMGGVPGQFFQPFGVTVAVSTMFSTL----VACTMTPMLG 501

Query: 825 DWRAKNAR 832
               K  +
Sbjct: 502 ARLLKPKK 509



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 67/176 (38%), Gaps = 7/176 (3%)

Query: 658  GPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
              KI  ++  + +  + ++ + +  I + +   +      +  L L I   L    L   
Sbjct: 856  DAKIMIDIFTRFLSALGLAVLGIYAILVLLYNNFLLPFSILMALPLSIGGALLGLLLTQK 915

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            E  L A+  ++ L+G    + +++ D    ++            + ++    L   + T+
Sbjct: 916  ELGLFALIGIVLLMGLVTKNAILLVDC---SLANERDGKPQFYAVIEAGVSRLRPILMTT 972

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            ++    ++P+A+    G       AI +  G+  +   ++ I      ++  ++ +
Sbjct: 973  LSTIAGMIPIALELGAGSQTRSPMAIAVIGGMTTSTLLTLVIVPVWFTYVDGFQHR 1028


>gi|254419259|ref|ZP_05032983.1| RND transporter, HAE1/HME family, permease protein [Brevundimonas
           sp. BAL3]
 gi|196185436|gb|EDX80412.1| RND transporter, HAE1/HME family, permease protein [Brevundimonas
           sp. BAL3]
          Length = 1069

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/489 (11%), Positives = 135/489 (27%), Gaps = 20/489 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   ++C IG             +   P   P              +      
Sbjct: 9   RRPVFAAVAAIVLCVIGAAAFFF-----LPVRELPDVDPPIV---------SVNTSYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++       + R  ++ + + F+  R  ++ A+ V   +  
Sbjct: 55  SAEVIESRITEPIEQQIAGIQGVERINSTSRDGRSNVNIEFSLDRNIDDAANDVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L        +         I++       +    ++ +    R  +D++       
Sbjct: 115 VVGRLPDQADPPEVAKADSDSQPIIIVFLRSTTMNR--LQLTDYADRYLVDRMATVPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    D + +     T   +       N               +     
Sbjct: 173 QVNIYGEQRYSMRIWLDSAAMAARGLTVNDVETALTSQNVELPAGSLESTDKDYTVRVAR 232

Query: 242 LVEDKVEIS----GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +      G   + + +                              + +     
Sbjct: 233 TYARPDDFRQLPIGTRGSASASAAVATGAGSGSSAIIQGQPTYVTRLGDIARVEEAPEEP 292

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                  +        + +AQ +     +    +   +R    P     +   N      
Sbjct: 293 RRLFRGNSMDQIGLAVTRQAQSNDLAISDGVHKMIDEIRPSLPPGVTLEIGSDNSVFTSH 352

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T  I   LV +V F+ +   +  L+      + ++ T  +L+ LG +L L ++
Sbjct: 353 AIDEVWITIGISMALVALVNFIFLGSLRAALIPSIVAPICLLATFIVLAPLGFSLNLLTL 412

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E I+      +    + + G  + +  +  + I  L     L
Sbjct: 413 LALVLAIGLVVDDAIVVVENIQRRLDHGEPPLVAAERGARQVFFAVVATTIVLLSVFAPL 472

Query: 478 FFFGGGAVR 486
            F  G   R
Sbjct: 473 LFLPGYVGR 481



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 8/138 (5%)

Query: 696  AITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            A+  L + +    G F L   G   N+ +   ++ LIG +  + +++ +      +L   
Sbjct: 907  AVIMLTVPLAAAGGLFGLLMAGSSLNIYSQIGLIILIGVAAKNGILIVEFAN---QLRDQ 963

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
              S R+ I +S +  L   + TS+A     LP+ +W   G     +  + +  G + A  
Sbjct: 964  GRSIREAIIESASLRLRPIIMTSIATAFGALPLVLWQGAGAGSRQTIGVVIFTGAIFATV 1023

Query: 811  SSIFIAAPILLFIYDWRA 828
             ++F+   I   +  +  
Sbjct: 1024 LTLFVVPVIYGVLARFTK 1041



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 69/218 (31%), Gaps = 4/218 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +         L  +    E+ +     F+    ++  L   +    + +A +  +  +  
Sbjct: 269 IQGQPTYVTRLGDIARVEEAPEEPRRLFRGNSMDQIGLAVTRQAQSNDLAISDGVHKMID 328

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
           +I   +P              +   I +  + + IS   + +  +I       AL     
Sbjct: 329 EIRPSLPPGVTLEIGSDNSVFTSHAIDEVWITIGISMALVALVNFIFLGSLRAALIPSIV 388

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
             + +  T    A  G   NL  + A++  IG  V+D +VV + +    +          
Sbjct: 389 APICLLATFIVLAPLGFSLNLLTLLALVLAIGLVVDDAIVVVENI---QRRLDHGEPPLV 445

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
             ++   +     V T++       P+    G V   F
Sbjct: 446 AAERGARQVFFAVVATTIVLLSVFAPLLFLPGYVGRLF 483


>gi|312961193|ref|ZP_07775698.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas fluorescens WH6]
 gi|311284851|gb|EFQ63427.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas fluorescens WH6]
          Length = 1059

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 161/583 (27%), Gaps = 34/583 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TQPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYALLNIKDELTRLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVTAIREQNRQVAAGALGAPPAPNATAFQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 +    +      
Sbjct: 236 SVNTQGRLVTEE-------------EFENIIIRSGDNGEITRLKDIARVELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIEISNEVRSKMAELKKSFPQGMDFSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+V
Sbjct: 343 VVHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLF 478
           L IG+ VD  I+V E +          F + +   S     I  +        I    + 
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPFPATEKAMSEVTGPIIATALVLCAVFIPAAFIS 462

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF---LIP 535
              G   + FA+T+ +S +IS F ++++  A+   ++R         + +        + 
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLRSHDAPKDRFSKVLDKIFGGWLF 522

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                 F +A    VG        S   LF +     + + G 
Sbjct: 523 RPFNRFFEKASHGYVGTVRRVIRGSGIALFLYAGLMVLTWFGF 565



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 72/217 (33%), Gaps = 10/217 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS---- 676
            +  +   + A        +  I +++              ++ + I  G   + +     
Sbjct: 831  ITAEINGNAAPGYSSGQAQAAIEKLLKDELPNGMTYEWTDLTYQQILSGNTALFVFPLCV 890

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +A L+       W   L  I  + + +   +    + G + N+     ++ L+G +  +
Sbjct: 891  LLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVIISGGDNNIFTQIGLIVLVGLACKN 950

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ +  +         +     + ++    L   + TS A  + V+P+      G  +
Sbjct: 951  AILIVEFAKD---KQQEGLDPLAAVLEACRLRLRPILMTSFAFIMGVVPLVFSSGAGAEM 1007

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +  + +  G++      + +     + I  +  + 
Sbjct: 1008 RHAMGVAVFSGMIGVTFFGLLLTPVFYVLIRRYVERQ 1044



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 89/236 (37%), Gaps = 17/236 (7%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +RS L +     I      G     +  + +   +  +    + +   I     +    
Sbjct: 279 ALRSLLNNQPAVAIPIFQRPGSNAIEISNEVRSKMAELKKSFPQGMDFSIVYDPTIFVRG 338

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E V   +   LI   +V ++               W  ++  +  + + +  T     
Sbjct: 339 SIEAVVHTLFEALILVVLVVIL-----------FLQTWRASIIPLVAVPVSLIGTFAVMH 387

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LFG   N  ++  ++  IG  V+D +VV + + +N++L    +      +K+++E  G  
Sbjct: 388 LFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIEL---GLEPFPATEKAMSEVTGPI 444

Query: 773 VYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           + T++      +    + G  G     FA+ +A   V++A +S+ ++  +   +  
Sbjct: 445 IATALVLCAVFIPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLR 500


>gi|262165164|ref|ZP_06032901.1| RND multidrug efflux transporter [Vibrio mimicus VM223]
 gi|262024880|gb|EEY43548.1| RND multidrug efflux transporter [Vibrio mimicus VM223]
          Length = 1036

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/651 (9%), Positives = 172/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +     TT+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRLKPELMAGRGVTTSDISDALNKENIESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSPEDFEYLVVKRASDGTPVYLKDVSDVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQFIDRLFAGLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRKIVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILDDWNE 624



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPVYLKDVSDVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|260773889|ref|ZP_05882804.1| protein-export membrane protein SecF [Vibrio metschnikovii CIP
           69.14]
 gi|260610850|gb|EEX36054.1| protein-export membrane protein SecF [Vibrio metschnikovii CIP
           69.14]
          Length = 300

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/284 (26%), Positives = 139/284 (48%), Gaps = 6/284 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              + R     +SI  ++ ++      GLN G+DF GG+   V  ++ +    V + L+ 
Sbjct: 8   HIRQIRHITNIVSIALTLLALAAFAIRGLNMGLDFTGGMVTEVRVDKSLTHDQVLNVLKP 67

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 S      E  +++R         A       ++  +  I     + +  +VG +
Sbjct: 68  ELGDSTSVIQSGEEGRWVIRYPLVEEQQSAPE-----IETLLNTISSQIEVVSNSMVGSQ 122

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +  ELI +G + ++I  + +L Y+  RF+W  A GA+  L+ D+   LGFFA+  +EFNL
Sbjct: 123 VGEELIDQGGLALLICILCILGYLSFRFEWRLASGALLALLHDVILVLGFFAVTQMEFNL 182

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           T  AA L ++GYS+ND +++ DR+R+ +          ++ D+++  T  R++ TS  + 
Sbjct: 183 TVFAATLAILGYSLNDSIIISDRIRELLVAKPK-APLAEINDQAVIATFSRTMVTSGTSL 241

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           ++V  + + GG  +  FAI M  GI+    SSI I   +  +++
Sbjct: 242 MTVSALWLMGGEPLQGFAIAMFIGIISGTWSSISIGTVLPEWLH 285


>gi|221212513|ref|ZP_03585490.1| acriflavine resistance protein B [Burkholderia multivorans CGD1]
 gi|221167612|gb|EEE00082.1| acriflavine resistance protein B [Burkholderia multivorans CGD1]
          Length = 1062

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/617 (11%), Positives = 173/617 (28%), Gaps = 44/617 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  IG             ++++P+  P +                   
Sbjct: 7   QRPILAWVIAIVIMLIGGAAT-----TTLPVEQYPTIAPPSVR---------VTATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQ 120
             D V   +    ++  + +        +     Q  I L+FA     +     V   + 
Sbjct: 53  SADTVAKTVTQVIEQKLAGIDNLLYMSSTSSNAGQATINLTFAPGTNADIAQ--VQNKVT 110

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             ++ L    ++  +         +++   +      ++I+    I  Q  D +      
Sbjct: 111 QASASLPETVQEQGVQVAKASSNFLMIVALSSPGGTLNSIDLGNVIATQIEDPLTQLTGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P RL+ +  T + ++      N        G     DS    
Sbjct: 171 GDVTLFGAQ-HAMRIWLNPVRLKSVGLTASDVTTAITNQNVQLSVGELGGAPATDSQAIN 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     ++                +    +        +        +          
Sbjct: 230 ATIASSSLLT-------------TPEQFGKILLRVNADGSKVLLKDVARVEVGGDSYDTS 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                +   T +      A L+              +      S  
Sbjct: 277 SRIDGKPAAALAIKLSTGANAMSTAKKVRAKLAELQPQLPKDVAISYPYDSTPFVKISIE 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+    + + ++ TL ++S +G ++ + S+  +
Sbjct: 337 EVVKTLFEAVILVFLVMYLFLQNLRATLIPTIVVPVALLGTLGVMSAIGFSINVLSMFAM 396

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDM----GFSRAYSTIFDSNITALIATVV 476
           VL IGL VD  I+V E +       +    +         + A   +        I    
Sbjct: 397 VLAIGLLVDDAIVVVENVERIMADEKLGPKAATKKAMGQITGALVGVTTVLTAVFIPMAF 456

Query: 477 LFFFGGGAVRGFAITMGLSILISM---------FTAISIVRAMMIFIIRYKKMKSIDINP 527
                G   R F++T+  ++++S+           A  +  A      R   + + +   
Sbjct: 457 FSGSTGAIYRQFSVTIVSAMVLSVLLALTLTPALCATLLTPASAQSHARRGFLGAFNRMF 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A    +   W V  +++  I ++  +         + +G I + V A  
Sbjct: 517 EKSNTGYSAMLARVVAKPLRWMVAYALITGIVALLFVTLPSSYLPEEDQGSIMVSVSAPV 576

Query: 588 PVDLSVVRSNLESLQIG 604
               S     +++++  
Sbjct: 577 GTPASSTLKTVQAVERY 593



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 83/228 (36%), Gaps = 10/228 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V          D S +        L        ++++  + +     ++   +
Sbjct: 256 SKVLLKDVARVEVGGDSYDTSSRIDGKPAAALAIKLSTGANAMSTAKKVRAKLAELQPQL 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I + +  +  + I + + +++  +     L     + + + 
Sbjct: 316 PKDVAISYPYDSTPFVKISIEEVVKTLFEAVILVFLVMYLFLQNLRATLIPTIVVPVALL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            TLG  +  G   N+ ++ A++  IG  V+D +VV + +     +    +  +    K++
Sbjct: 376 GTLGVMSAIGFSINVLSMFAMVLAIGLLVDDAIVVVENV--ERIMADEKLGPKAATKKAM 433

Query: 766 NETLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
            +  G  V   +   +    +PMA + GS       F++ +   +V++
Sbjct: 434 GQITGALV--GVTTVLTAVFIPMAFFSGSTGAIYRQFSVTIVSAMVLS 479



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 7/140 (5%)

Query: 674  IISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             IS I + + +  +   W   L  I  + + +   L    L G+  ++     +LT IG 
Sbjct: 893  AISLIVVFLCLAGLYESWSVPLAVILVVPIGVLGALAAAHLRGLSNDVYFKVGLLTTIGL 952

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +  +    L        D   ++ +  L   + TS+A    VLP+ +    
Sbjct: 953  STKNAILIVEFAKD---LQAQGRGLLDATLEAAHLRLRPILMTSLAFVFGVLPLVISTGA 1009

Query: 790  GGSVIGSFAIPMAFGIVVAA 809
            G +   +    +A G++ A 
Sbjct: 1010 GSAARHAIGTGVAGGMIAAT 1029


>gi|293602081|ref|ZP_06684535.1| multidrug efflux pump BpeF [Achromobacter piechaudii ATCC 43553]
 gi|292819536|gb|EFF78563.1| multidrug efflux pump BpeF [Achromobacter piechaudii ATCC 43553]
          Length = 836

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 72/571 (12%), Positives = 157/571 (27%), Gaps = 33/571 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSILVLLAGLLAMF-----QLPISEYPEVVPPSVVV---------RAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTLTVNFKLGVDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   I    D++       
Sbjct: 116 ALPRLPPDVQRLGVTTAKSSPTLTLVVHLISPNDRYDITYLRNYAILNVKDRLARITGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T +++       N      + G    +     Q 
Sbjct: 176 EVTVWGSGNYSMRVWLDPQKVAQRGMTASEVVAAIREQNVQVAAGVIGASPTQGDVPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 +           
Sbjct: 236 NVNARGRLQSEE-------------EFRDIILKTSPDGAVTHLSDVARVELDAQEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +            A L     P     +E         S   
Sbjct: 283 LLDNKQAVGMGIMQSPGANALDVSSKVRAAMAELAQDFPPGVEYRIEYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T ALL + G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFALLLVFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T     V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAAGLSPRDATYRAMREVSGPIIAIALTLCAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK--SIDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +       F    +
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLKSHHDKPDWLTRGMNRVFGRFFN 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTH 567
                F RA                  +  +
Sbjct: 523 WFNNMFGRASESYGTGVSGVIRRKAGAMGVY 553



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFALLLVFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S RD   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 425 A---GLSPRDATYRAMREVSGPIIAIALTLCAVFVPLAFMTGLTGQFYKQFAMTIAISTV 481

Query: 807 VAASSSI 813
           ++A +S+
Sbjct: 482 ISAFNSL 488


>gi|258590882|emb|CBE67177.1| Protein-export membrane protein secF [NC10 bacterium 'Dutch
           sediment']
          Length = 312

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/298 (28%), Positives = 145/298 (48%), Gaps = 5/298 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSVV 594
             I F+  R     +S +  +  +  +   G    N GIDF GG  + +  N+PV+L  V
Sbjct: 8   TQIDFVAWRRIAFAVSSVLCLLGVISIIQIGRGAANLGIDFAGGTSVQLKFNKPVELGQV 67

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L    + D   Q F      +VRL+      V   + ++ +  K     P       
Sbjct: 68  RALLAENGLRDSEPQQFAEGDRIMVRLKRAEDSRVGMAQRVQDIFVKALPDNPFVVEGTN 127

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E+ GP I ++L +  +  + IS + ++ YI  RF++ F + A    + D+   LG F + 
Sbjct: 128 EV-GPAIGKDLQKAALWAIAISMLGIIAYIAWRFEFKFGVAAAIATLHDVLAVLGLFMIL 186

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             E  L  + A+LTL GYS+ D VVV+DR+R+N++      S  ++I++SINE L R+  
Sbjct: 187 NREITLLIITALLTLAGYSLTDTVVVFDRIRENLRD-RRKESLGEIINQSINEVLSRTTV 245

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           TS+   + +L + + GG V+  F++ +  G+ V   SS F+A+PI+           +
Sbjct: 246 TSLTVLLVLLALFLLGGEVLHDFSLALIAGVCVGTYSSWFVASPIVYEWRIREHARVK 303


>gi|299533829|ref|ZP_07047200.1| hydrophobe/amphiphile efflux-1 transporter [Comamonas testosteroni
           S44]
 gi|298718245|gb|EFI59231.1| hydrophobe/amphiphile efflux-1 transporter [Comamonas testosteroni
           S44]
          Length = 1064

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/548 (11%), Positives = 155/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  ++  +GL+       PQ  +  +P  +P + +                  
Sbjct: 10  RPIFAVVLSIIMFAVGLVAI-----PQLPVGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   + +  +E  + ++             + ++  +F      +  A +V   +  
Sbjct: 56  PKEVAESVAVPLEEAINGVEGLMYMKSVAASDGSLQVVATFRPEIDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            A+     +  +  D +       
Sbjct: 116 AQSRLPEEVRQFGVTTQKQASTPLMYVGLVSKDGKHDALYLRNHVTLKIKDVLARIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T  ++       N        G            
Sbjct: 176 DVGIYGAGDYAMRVWLDPHKVAARQLTAGEVIAAIREQNIQVSAGQLGAEPSAQKSDKLL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +     G +         I    +      
Sbjct: 236 SINVRGRL-------------KTAEEFGDIVLKSGEGGQVVRLADVARIELGASDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +     E        L                      S   
Sbjct: 283 WSDTKNMAAVGIFLSPGANALGVAEQVYAAMDRLSKDLPEGVAFESVWDPTVFVRDSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ +++I T A L LLG ++   ++ G+V
Sbjct: 343 VQNTLIEAVILVVLVVIVFLQTWRASIIPLLAVPVSIIGTFAGLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+ VD  I+V E +     +  S   +  +        I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERYIEQGHSPQEAAHLAMKEVSGPIIAIALVLCAVFVPMAFLS 462

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++        +  +    L     
Sbjct: 463 GVTGQFYQQFAVTIAISTVISAINSLTLSPALAAKLLQPHGAPRDALARVIDKGLGWLFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 PFNRFFDR 530



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 6/156 (3%)

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +  L+   +   W   L  I  + + I   L    L G + N+     ++ L+G +  +
Sbjct: 888  MLVFLVLAALYESWTLPLAVILIVPVCICAALFGVWLAGGDNNVFVQVGLVVLMGLACKN 947

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SV 793
             +++ +  R+   L        D   ++    L   V TS+A     +P+ + GG    V
Sbjct: 948  AILIVEFARE---LEMRGSPTVDAALQACRLRLRPIVMTSIAFIAGAVPLLIGGGAGSEV 1004

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  + +  G++      +F+     + +     +
Sbjct: 1005 RAATGVTVFSGMLGVTLFGLFLTPVFYVTLRRLSGR 1040



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 76/198 (38%), Gaps = 9/198 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 ++ + K + E V   ++ +  +      + +    I  VI+  + +++++    
Sbjct: 307 EQVYAAMDRLSKDLPEGVAFESVWDPTVFVRDSIKAVQNTLIEAVILVVLVVIVFLQTWR 366

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + I  T     L G   N   +  ++  IG  V+D +VV + +    
Sbjct: 367 ASIIPL---LAVPVSIIGTFAGLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENV---E 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +      S ++    ++ E  G  +  ++      +PMA   G        FA+ +A   
Sbjct: 421 RYIEQGHSPQEAAHLAMKEVSGPIIAIALVLCAVFVPMAFLSGVTGQFYQQFAVTIAIST 480

Query: 806 VVAASSSIFIAAPILLFI 823
           V++A +S+ ++  +   +
Sbjct: 481 VISAINSLTLSPALAAKL 498


>gi|240128639|ref|ZP_04741300.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268687030|ref|ZP_06153892.1| drug efflux protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268627314|gb|EEZ59714.1| drug efflux protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 1067

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 163/570 (28%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H +     
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HAIYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              + G +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEGSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   ++++  + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIAMLSSD--VQSTEEMNDYAQRNVVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNIYLKDVAKVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A+L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  ++
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMI 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFDSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 100/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ +  G+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAAGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 95/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNIYLKDVAKVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A++ +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMILVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+   +   FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|319784797|ref|YP_004144273.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170685|gb|ADV14223.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 1058

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 69/613 (11%), Positives = 159/613 (25%), Gaps = 44/613 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   +  ++   G +           + +FP   P               +V+    
Sbjct: 8   RPIFASAIAIIMVLAGSI-----CYFLLPVSQFPDITPP-------------QVVVSAHY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +    +  L   +    G+   S     +    IT++F         A  V  
Sbjct: 50  PGASAQVVADTVTTPLEQQINGVQGMTYMSSTSSNDGSSTITITFDVGYSLSTAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L     +  +    +    +++            +  S     Q +D +   
Sbjct: 110 RVSQAASSLPAIVNQGGVTIKKQNPNFVLIVNLTSPDSSVDPVALSNLAYLQVVDPLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L  L  T   +       N        G        
Sbjct: 170 PGVGDVQIFGERRYSMRVWLDPDKLANLGITAVDVQNAIAEQNVQVAAGKIGQSPAPAGT 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  V     +S                   + +  +              I       
Sbjct: 230 AFEMQVNAVGRLS------------DPKEFGDIVVRANTDTGSLVRLRDVARIELGALQY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +     +        L           +          
Sbjct: 278 SSSAFFGKDPTVVLAVYQMPGSNALDLQQRVKDKMQELSGRFPKGVSYAMHYDTTRFVSA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+ V+F+ +   +  ++   +I ++++ TL ++ +LG +L + S+
Sbjct: 338 SMHDVLITLGEALVLVVAVVFLFLQSWRTTIIPTIAIPVSLVATLVVMEMLGFSLNMLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IGL VD  I+V E +  +         +     +     I  +    +   V +
Sbjct: 398 LGMVLAIGLVVDDAIVVVENVERQLEAGLKPLAATKAAMTEVTGPIIATTAVLMAVFVPV 457

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYK------KMKSIDINPL 528
            F  G + +    FA+T+ +S+ IS F ++++  A+    +R++        +  +    
Sbjct: 458 AFIPGVSGKLYNQFALTVAISVGISAFNSLTLSPALSAAFLRHRGETQFVPFRWFNTGFD 517

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                  + + I            +                   ++ +G   + +     
Sbjct: 518 RLSHAYANGVRILIRLRWIMLGLFAAGLVATYFVWQRLPSTFLPVEDQGYFFVVIQLPDG 577

Query: 589 VDLSVVRSNLESL 601
             L    +  +  
Sbjct: 578 ASLERTDAVAQKA 590



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 64/183 (34%), Gaps = 9/183 (4%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                   +EL    I  V+     + +++ +      W      +  + L +        
Sbjct: 855  EWTGITFQELKAGSIASVVFGLAIVFVFLILAMQYESWAMPFMVLLAVPLALFGAFAALL 914

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G++ ++ +    + LIG +  + +++ +  R   +     +S  D   ++    L   
Sbjct: 915  LRGMQIDVYSQIGFVMLIGLAAKNAILIVEFAR---RRREEGLSIVDAAMEAARLRLRPI 971

Query: 773  VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + T+ A  + VLP+      G +   S    +  G+V A   S+         I   R +
Sbjct: 972  LMTAFAFILGVLPLMFATGAGAASRQSIGTTVFGGMVAATILSLVFVPVFYAVIEQLRER 1031

Query: 830  NAR 832
              +
Sbjct: 1032 RGK 1034



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 55/142 (38%), Gaps = 6/142 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +     + + +  TL    + G   N+ ++  ++  IG  V+D +VV + +    
Sbjct: 363 SWRTTIIPTIAIPVSLVATLVVMEMLGFSLNMLSLLGMVLAIGLVVDDAIVVVENV---E 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +     +        ++ E  G  + T+       +P+A   G        FA+ +A  +
Sbjct: 420 RQLEAGLKPLAATKAAMTEVTGPIIATTAVLMAVFVPVAFIPGVSGKLYNQFALTVAISV 479

Query: 806 VVAASSSIFIAAPILLFIYDWR 827
            ++A +S+ ++  +       R
Sbjct: 480 GISAFNSLTLSPALSAAFLRHR 501


>gi|258621606|ref|ZP_05716638.1| multidrug resistance protein, putative [Vibrio mimicus VM573]
 gi|258586078|gb|EEW10795.1| multidrug resistance protein, putative [Vibrio mimicus VM573]
          Length = 1036

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 61/651 (9%), Positives = 172/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +     TT+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRLKPELMAGRGVTTSDISDALNKENIESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSPEDFEYLVVKRASDGTPVYLKDVSDVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQFIDRLFAGLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRKIVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLIPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILDDWNE 624



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPVYLKDVSDVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|312115646|ref|YP_004013242.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311220775|gb|ADP72143.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 1054

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 86/684 (12%), Positives = 194/684 (28%), Gaps = 45/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I   G+L  +        + +FP  +P               + +  + 
Sbjct: 9   RPRLAIVLSIVITIAGILGLI-----NLPVSQFPDIVPP-------------QVQVTANY 50

Query: 63  DDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  ++       +     + K      +        +TL+F      +     VT 
Sbjct: 51  PGASAEVVETSVAQPLEAQMVGVDKMLYMKSNSANDGTYTLTLTFELGTNPDINTVNVTN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S+L     +  ++T       +       +      +  +       +D+I  +
Sbjct: 111 RVQSAQSQLPEIVTRQGVITRKRSSAVLQFMMLYSETGEQDPLFITNYATINVLDEIART 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q     R+   +    D  RL  L    + +       N        G R +    
Sbjct: 171 PGVGQASLFGRLNYSMRIWFDIERLVSLNLMPSDVIRAIQAQNIQAPVGRVGARPISPDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  ++ +  +S                +    I                 +       
Sbjct: 231 QFQMNLQTQGRLS-------------TPEQFGSIILRANPDGSVLRVRDVAQVQLGAQNE 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L+               +   T          L+         +V   +      
Sbjct: 278 DSESRLSGKPAVAMGIYLAPGANAVATAARVNATMEKLKPRFPQGLNYLVVFDSTTFISD 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV+IV+F+ +   K  ++   ++ ++++ T A L LLG +    S+
Sbjct: 338 TIHEVLKTIIEAFILVVIVVFLFLGNLKATIIPAIAVPVSLVGTFAFLLLLGYSANTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +V+ IG+ VD  I+V E +        + S   +     ++    I    +  L   V
Sbjct: 398 LALVIAIGIVVDDAIVVVENVERVMEEEPDLSPADATKKAMNQITGPIIAITLVLLSVFV 457

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
              F     G   R FA+T+ +++LIS   A+++  A+    +R    + +    + R  
Sbjct: 458 PTAFLPGITGQLFRQFAVTISIAMLISAIVALTLSPALCRVFLRPAAKQGVMGWVMRRID 517

Query: 533 LIPDCIAIQFMRARFWG----VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
              D  A    R           I    +      L T       + +G   + +     
Sbjct: 518 NTRDSYAWVVTRLVRVAVVSLFIIGGFAAGAYFLSLKTPTGFLPEEDQGAFFIVIQLPNG 577

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             +S      + ++   +         + +         +     ++  +K       P 
Sbjct: 578 ASVSRTTEVAKQVEGMMLKQPQVYQTFSVIGFSFLDQSAASNSAFMVVRLKPFADRPGPE 637

Query: 649 STIQNTEIVGPKISRELIRKGIVG 672
           +++Q        +++ +    I  
Sbjct: 638 NSVQTLMRKTFAMTQGIRTANIFA 661



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 82/240 (34%), Gaps = 6/240 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              + S +I               V +   P   V+    L  + +   + +P        
Sbjct: 797  QAIASARIVVGPQVISRYNNYRSVSITGSPAPGVSSGTALAAMDEVSKKTLPNGFSYEWT 856

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +      + G++  +    A L  + +   W   +  I ++ + I   +    + G
Sbjct: 857  GTAYQEHEASGQTGVILALALLFAYLFLVGLYESWSIPISVILSIAVAILGAMSGILIAG 916

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +  +L A   ++ L+  +  + +++ +  ++    +   +   +   +         + T
Sbjct: 917  LTLDLYAQIGLVVLVALAAKNAILIVEFAKEE---HDKGVPIMESAVRGARTRFRAVMMT 973

Query: 776  SMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S+A  + + P+ V  G+ +        P+  G++ A+   I I   + +     R +  +
Sbjct: 974  SIAFILGLYPLVVATGAAMVTRRDVGTPVFAGMLAASFVGILIIPMLYVVFQSVRERVKK 1033



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 88/243 (36%), Gaps = 5/243 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  D   +        +        ++VA    +    +K+    P     
Sbjct: 266 DVAQVQLGAQNEDSESRLSGKPAVAMGIYLAPGANAVATAARVNATMEKLKPRFPQGLNY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                      + I + +  +I + I ++I +++        +     + + +  T  F 
Sbjct: 326 LVVFDSTTFISDTIHEVLKTIIEAFILVVIVVFLFLGNLKATIIPAIAVPVSLVGTFAFL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   N  ++ A++  IG  V+D +VV + + + +      +S  D   K++N+  G 
Sbjct: 386 LLLGYSANTISLLALVIAIGIVVDDAIVVVENV-ERVMEEEPDLSPADATKKAMNQITGP 444

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++      +P A      G +   FA+ ++  ++++A  ++ ++  +        A
Sbjct: 445 IIAITLVLLSVFVPTAFLPGITGQLFRQFAVTISIAMLISAIVALTLSPALCRVFLRPAA 504

Query: 829 KNA 831
           K  
Sbjct: 505 KQG 507


>gi|296129645|ref|YP_003636895.1| protein-export membrane protein SecF [Cellulomonas flavigena DSM
           20109]
 gi|296021460|gb|ADG74696.1| protein-export membrane protein SecF [Cellulomonas flavigena DSM
           20109]
          Length = 360

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 137/314 (43%), Gaps = 13/314 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     +   +  R     I+      S  LL T GLN GI+F+GG +  V  
Sbjct: 5   FAQWGNDLYSGRRSYDIVGRRRTWYVITAALVAISGVLLITPGLNPGIEFRGGSEFVVSG 64

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
               D  +    + ++   ++      G  +  ++      D      V E+    I   
Sbjct: 65  VETSDQQLATDTVLAVAPQEVPRVTTVGGSSLRIQTAELTSD-----EVTEVTNGLIAAF 119

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
                   +  +GP   R++ +K + G+++  + + + + + F+ W  A  A+  L  D+
Sbjct: 120 DVSEDQVTSTFIGPTWGRDVSQKAVTGLVVFLLFVSLVMTVYFRNWRMAAAAMLALFHDL 179

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM--KLYTTSISFRDLID 762
             T+G +A  G E     V   LT++GYS+ D VVV+D++R+N    L  T  ++ +  +
Sbjct: 180 ILTVGIYAAVGWEVTPATVIGFLTILGYSIYDTVVVFDKVRENTVDTLDQTRFTYAEKAN 239

Query: 763 KSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            ++N+TL RS+ TS+ A + V  +      + G   +   A+ +  G+ V   SSIF+A 
Sbjct: 240 LAVNQTLVRSINTSVVALLPVASILVIGAFILGAGTLRDIALALFVGMFVGTFSSIFLAT 299

Query: 818 PILLFIYDWRAKNA 831
           P+ + + +  A+  
Sbjct: 300 PLEVTLREREARVK 313


>gi|327402146|ref|YP_004342984.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Fluviicola taffensis DSM 16823]
 gi|327317654|gb|AEA42146.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Fluviicola taffensis DSM 16823]
          Length = 1069

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/543 (12%), Positives = 160/543 (29%), Gaps = 39/543 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I  +G+L             +FP   P               +++    
Sbjct: 8   RPVLAIVLSLVIIFMGVLAI-----SGLSTSQFPEIAPPT-------------VIVRASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117
                  L +     L   +    G+   +       +  I + F      +    +V  
Sbjct: 50  PGASAKVLTESVLIPLEQAVNGVPGMKYMTSDATSAGEANIQIVFNLGTDPDQALVQVNT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V ++L V  ++  ++        ++          +             I ++   
Sbjct: 110 RIAQVLNRLPVLVQREGVIVNRIMPSMLMYVNLYSKDPKADMKFIFNVAGVNMIPELQRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+R    +T ++       +        G    + ++
Sbjct: 170 NGIGQASILGSRQYAMRIWLKPDRMRAYNISTDEIMEALNSQSVIGSPGRIGRSDGKRAE 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y++                 F+       V I  +  G     +   +         
Sbjct: 230 ALEYVL------------TYKGRFNEADEYKNVIIRSNPEGEILRLKDVAEVELGSEYYD 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +       P     +       +          L  + +    P     +          
Sbjct: 278 IYSNKDEYPSAAIVLKQTYGSNATEVIERVKEKLEELKKTSFPPGMEYEISYDVSNFLDA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ +++I     + L G T+ L ++
Sbjct: 338 SIEKVIHTLGEAFILVALVVFLFLGDLRSTLIPTIAVPVSLIGAFMFMQLFGLTINLITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +  +   S + ++          +    +      V 
Sbjct: 398 FALVLAIGIVVDDAIVVVEAVHAKMEEEHLSPYMAVKKVLKEISGAVIAITLLMTAVFVP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      R FAITM  SI++S   A+++   +   +++    K     P++RF  
Sbjct: 458 VAFMTGPVGIFYRQFAITMATSIVLSGLVALTLTPVLCAMLLKNNHGKPRKKTPINRFLD 517

Query: 534 IPD 536
             +
Sbjct: 518 WFN 520



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/246 (17%), Positives = 90/246 (36%), Gaps = 7/246 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V    L S      S ++       +++  Y    +    RV E +++      P    
Sbjct: 265 DVAEVELGSEYYDIYSNKDEYPSAAIVLKQTYGSNATEVIERVKEKLEELKKTSFPPGME 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
                         I K I  +  + I + + +++        L     + + +     F
Sbjct: 325 YEISYDVSNFLDASIEKVIHTLGEAFILVALVVFLFLGDLRSTLIPTIAVPVSLIGAFMF 384

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LFG+  NL  + A++  IG  V+D +VV + +    K+    +S    + K + E  G
Sbjct: 385 MQLFGLTINLITLFALVLAIGIVVDDAIVVVEAVH--AKMEEEHLSPYMAVKKVLKEISG 442

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDW 826
             +  ++      +P+A   G V      FAI MA  IV++   ++ +   +  + + + 
Sbjct: 443 AVIAITLLMTAVFVPVAFMTGPVGIFYRQFAITMATSIVLSGLVALTLTPVLCAMLLKNN 502

Query: 827 RAKNAR 832
             K  +
Sbjct: 503 HGKPRK 508



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 82/245 (33%), Gaps = 12/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +  +  Q  +    + +        S A+        K   E+  
Sbjct: 790  YVKNDRGEMVPFSAFMKIVKSQGANEINRYNMYTTASIRGSAAKGFSSGEAIKAAQEVAK 849

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-----KWYFALGAITTLIL 702
             +  +  +I    +S++ + +G   + I  I +LI+++         +   L  I +L  
Sbjct: 850  QNLPRGYDIDWGGLSKDEVMRGNEALYI-FIVVLIFVYFVLAAQYESFIIPLAVIFSLPA 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I  +     + G+E N+ A   ++ L+G    + V++ +     M+ +    +  +   
Sbjct: 909  GIFGSFFLLQIMGLENNIYAQVGLVMLVGLLGKNAVLIVEFA---MQKHHEGSTVLEAAI 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPI 819
            +         + TS A    ++P+ +  G   I   +       G++      + I   +
Sbjct: 966  EGAKVRFRPILMTSFAFIAGLIPLVIATGPGAIGNRTIGACALGGMLFGTIFGVIIIPGL 1025

Query: 820  LLFIY 824
                 
Sbjct: 1026 YYIFG 1030



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 50/541 (9%), Positives = 127/541 (23%), Gaps = 71/541 (13%)

Query: 10   LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
            L + I  +G  + +     +      PS             +G  + +++          
Sbjct: 542  LVTFIILLGFGLGIFGLSQKLPSGFIPSED-----------QGMIYAIIQ-TPPGSTLER 589

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR----------------FKENIAD 113
                + +L++  +K             ++      S                   + I  
Sbjct: 590  TNDIARKLQAIAEKVPGIKSVSALAGYEVLTEGRGSNAGTCLINLDPWSERKHNVQEIIY 649

Query: 114  KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            ++    + +            +          +   +  +      +E+        + +
Sbjct: 650  ELEEKAKVIPGATIEFFDPPAVPGYGAAGGFSLQLLDKTNTGDYLELERVNTEFMNALRK 709

Query: 174  IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
                E T           Q   + +     Q   +                         
Sbjct: 710  --RKEITGLFTFYSANYPQYELQINNDLAMQKGVSIGNAMNTLS---------------- 751

Query: 234  RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                           + G         +       V              ++   N    
Sbjct: 752  --------------ILIGSTYELGFIKYQRFFKVFVQASPEYRRLPEDIMKLYVKNDRGE 797

Query: 294  LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            +        +        I       + +     A   ++     +          R   
Sbjct: 798  MVPFSAFMKIVKSQGANEINRYNMYTTASIRGSAAKGFSSGEAIKAAQEVAKQNLPRGYD 857

Query: 354  ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL--------TLALL 405
             D G  S  +      A  + IV+ + V +        F I L VI         +  LL
Sbjct: 858  IDWGGLSKDEVMRGNEALYIFIVVLIFVYFVLAAQYESFIIPLAVIFSLPAGIFGSFFLL 917

Query: 406  SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             ++G    + +  G+V+ +GL   + +L+ E   +++ +  +V  +   G    +  I  
Sbjct: 918  QIMGLENNIYAQVGLVMLVGLLGKNAVLIVEFAMQKHHEGSTVLEAAIEGAKVRFRPILM 977

Query: 466  SNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            ++   +   + L      G    R         +L      + I+  +          + 
Sbjct: 978  TSFAFIAGLIPLVIATGPGAIGNRTIGACALGGMLFGTIFGVIIIPGLYYIFGSLAAGRK 1037

Query: 523  I 523
            +
Sbjct: 1038 L 1038


>gi|294667837|ref|ZP_06733047.1| multidrug efflux transporter [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292602463|gb|EFF45904.1| multidrug efflux transporter [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1049

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 68/518 (13%), Positives = 150/518 (28%), Gaps = 34/518 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L        L+++PS  P   I+                 
Sbjct: 8   RPIFAWVIAIVITLAGALSIL-----SLPLEQYPSIAPPT-IN--------VSATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + L     +   S       ITL+F      +    +V   +  
Sbjct: 54  AQTVQNSVTQILEQQMTGLDHLLYMSSSSSSAGTASITLTFDSGTDPDTAQVQVQNKVSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEK-EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + L    + N +  T        ++     +     + +    ++    D I      
Sbjct: 114 GEAMLPEAVQSNGVTVTKSTGSSMFMVLAFTSEDGSMDSTDIGDYMVSTLQDPISRLNGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP +LR      A +S      N        G           
Sbjct: 174 GGVNVFGS-EYSLRVWLDPDKLRTYALMPADVSNAISAQNADVSSGALGALPAVQGQQLN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  + ++                 +    +   + G           +          
Sbjct: 233 ATVTSRSKL-------------KTPAQFEAIVLKSQTGGATVHLRDVARVELGSKSYASS 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   +          +     +        L+          +          S  
Sbjct: 280 SKYNGKSASGMGLELATGANALAAAKAVEAKLEQLQPYFPTGLKYEIAYDTTPFVRISIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+++ +   +  LV   ++ + ++ T  +L+LLG ++   ++  +
Sbjct: 340 EVVKTLLEAIVLVVLVMYLFLQNWRATLVPVIAVPVVLLGTFGVLALLGYSINTLTMFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +    + +  S   +      +    +    +      + + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERLMSGEGMSPRQATYTSMGQISGALVGIALVLTAVFLPMAF 459

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FG   G   R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FGGATGEIYRQFSVTIAAAMLLSLLVALTLSPALCASL 497



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 49/404 (12%), Positives = 129/404 (31%), Gaps = 8/404 (1%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L  + ++ +    A I L      D +    +   + ++    +  ++         +  
Sbjct: 75  LLYMSSSSSSAGTASITLTFDSGTDPDTAQVQVQNKVSQGEAMLPEAVQSNGVTVTKSTG 134

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMG--LSILISMFTAISIVRAMMIFIIRYKKMKS 522
            S    L  T          +  + ++        ++    +++  +     +     K 
Sbjct: 135 SSMFMVLAFTSEDGSMDSTDIGDYMVSTLQDPISRLNGVGGVNVFGSEYSLRVWLDPDKL 194

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                +              + +   G   ++     +  +     L     F+  +   
Sbjct: 195 RTYALMPADVSNAISAQNADVSSGALGALPAVQGQQLNATVTSRSKLKTPAQFEAIVLKS 254

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                 V L  V       +    S +      + +        +++A  + +E   +++
Sbjct: 255 QTGGATVHLRDVARVELGSKSYASSSKYNGKSASGMGLELATGANALAAAKAVEAKLEQL 314

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
               P               R  I + +  ++ + + +++ +++  + W   L  +  + 
Sbjct: 315 QPYFPTGLKYEIAYDTTPFVRISIEEVVKTLLEAIVLVVLVMYLFLQNWRATLVPVIAVP 374

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T G  AL G   N   + A++  IG  V+D +VV + +     +    +S R   
Sbjct: 375 VVLLGTFGVLALLGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERLMSGEGMSPRQAT 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
             S+ +  G  V  ++      LPMA +G   G +   F++ +A
Sbjct: 433 YTSMGQISGALVGIALVLTAVFLPMAFFGGATGEIYRQFSVTIA 476



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 80/261 (30%), Gaps = 17/261 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                   G   +   ++  V  S   S+  +     +S  N                   
Sbjct: 779  RMLPADIGRWYVRNSSSEMVPFSAFSSSAWAYAPQVLSRFNGVESMEVTGSAASGISSGQ 838

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WI 686
            A   +  +V K   ++    +  + +                 ++ +   + +++    +
Sbjct: 839  AMNDIAGLVGKLGKDVGYAWSGMSYQEQAAG--------AQTWMLYAVSLVFVFLCLAAL 890

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               W   +  +  + + I   L    L G+  ++     +L  +G +  + +++ +  ++
Sbjct: 891  YESWSIPISVMLAVPVGIVGALLATWLRGLSNDIYFQVGLLATMGLAAKNGILIVEFAKE 950

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
               L        +    +    L   V TS+A  + VLPM V    G     S    +  
Sbjct: 951  ---LEEKGQPLIEATLHAARMRLRPIVMTSLAFLLGVLPMVVSSGAGSGGRHSLGTGVLG 1007

Query: 804  GIVVAASSSIFIAAPILLFIY 824
            G +V+    IF      + + 
Sbjct: 1008 GTLVSTLLGIFFVPLFYVMVR 1028


>gi|88705902|ref|ZP_01103611.1| acriflavine resistance protein B [Congregibacter litoralis KT71]
 gi|88699973|gb|EAQ97083.1| acriflavine resistance protein B [Congregibacter litoralis KT71]
          Length = 1077

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 69/575 (12%), Positives = 163/575 (28%), Gaps = 40/575 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +GL+       P   +  +P  +P               + +    
Sbjct: 32  RPIFAAVLSIIIFVVGLIAI-----PLLPVSEYPEVVPP-------------SVQVRATY 73

Query: 63  DDFV-NGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                       +  L + +   E +         + +   T++F      ++   KV  
Sbjct: 74  PGANPREIADTVAAPLEASITGVENMLYMKSVAGSDGVLVLTVTFRPGTDPDDAQVKVQN 133

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    ++  +VT  +     ++ Q         A+      +    D++   
Sbjct: 134 RVAQAEPRLPEAVRQQGVVTVKQSHNETLVVQLRSPGDRYDALYLRNYAVLHVRDELARI 193

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP ++  L  T   +       N        G        
Sbjct: 194 QGVGDAKIYGSGDYAMRLWLDPDKIAALGMTAGDVVEAVREQNVQVSAGQLGAPPNPSGS 253

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I       +         +    +  
Sbjct: 254 DFLLSINAQGRLVTEE-------------EFGDVIVKTGSQGQVTRLRDVARVEMDASSY 300

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L                +     +        L           VE  +      
Sbjct: 301 SLMSLLNNKPAVAISVLEAPGANAIEISDQVRAKMDELAKRFPEGVEWSVEYDSTVFVRQ 360

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV++V+ + +   +  ++   ++ ++V+ T A+L +LG ++   ++
Sbjct: 361 SIKAVVNTLLEAIGLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAVLLMLGFSINTLTL 420

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIAT 474
            G+VL IG+ VD  I+V E +     +  +   +           I   +    +  +  
Sbjct: 421 FGLVLAIGIVVDDAIVVVENVERNIAEGLAPLAAAHQAMREVSGPIVAISLVLCSVFVPM 480

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFL 533
             L    G   + FA+T+ +S +IS   ++++  A+    +  +     +    L R   
Sbjct: 481 AFLSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAARLLRPHGAAPDLPTRVLDRSLG 540

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                  +F      G G S+   +     +F   
Sbjct: 541 WIFRPFNRFFLRSADGYGNSVSRILGRRGAVFLVY 575



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   +    L G + N+     ++ LIG +  + +++ +  R+  
Sbjct: 922  SWTLPLAVILIVPMSLLSAMTGVWLAGGDSNIFVQIGLIVLIGLASKNAILIVEFARE-- 979

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L     S  D   ++    L   + TS+A    V+P+ V    G  +     + +  G+
Sbjct: 980  -LERKGHSILDAALEASRLRLRPIIMTSIAFIAGVVPLMVGSGAGAEIRQVMGVTVFAGM 1038

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +     +  R
Sbjct: 1039 LGVTLFGLFLTPVFYVALRRLATRKPR 1065



 Score = 45.1 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 10/126 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     + G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 387 WRASIIPLLAVPVSVVGTFAVLLMLGFSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 446

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                ++      +++ E  G  V  S+      +PMA   G        FA+     I 
Sbjct: 447 E---GLAPLAAAHQAMREVSGPIVAISLVLCSVFVPMAFLSGVTGQFYKQFAVT----IA 499

Query: 807 VAASSS 812
           ++   S
Sbjct: 500 ISTVIS 505


>gi|160933840|ref|ZP_02081228.1| hypothetical protein CLOLEP_02702 [Clostridium leptum DSM 753]
 gi|156867717|gb|EDO61089.1| hypothetical protein CLOLEP_02702 [Clostridium leptum DSM 753]
          Length = 320

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 134/314 (42%), Gaps = 16/314 (5%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +      I+F+  +    GISI   +  +      G    I F GG  +       ++  
Sbjct: 1   MKFHQFKIRFVENKKIFFGISIAVLLIGVIFNVIFGARLDIQFTGGAIVNYSFTGEINTD 60

Query: 593 VVRSNLESLQIG--------DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            + + +E             DI         N +            + +       +   
Sbjct: 61  ELAALVEETTGKSVNVNESTDIVAGEDGAINNNVSIEFAGNDALSLEGQKAMEDAIQEKY 120

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTL 700
                    ++ V P    + + K +  V ++A+ M+IYI  RF+    W   + A+  L
Sbjct: 121 PDNGFQKLESDSVDPVNGEKFLLKCLCAVGLAAVLMIIYIAFRFRKIGGWSAGVVAVIAL 180

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           + D+      F +F +  +   +A VLT++GYS+ND +++YDR+R+N ++        +L
Sbjct: 181 LHDVAVIYFTFVVFRMPVDDNFIAVVLTILGYSLNDTIIIYDRIRENRRIMGPRAEIGEL 240

Query: 761 IDKSINETLGRSVYTS----MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           ++ SIN+TL R++ TS    MA  + V+   V+  S + +FA+P+ FGI+    SS  I 
Sbjct: 241 VNTSINQTLTRTINTSVATVMAVGVVVVVGLVYNLSSVVTFALPLMFGIICGCYSSTCIT 300

Query: 817 APILLFIYDWRAKN 830
            P+ +    +RAK 
Sbjct: 301 GPLWVVWRRYRAKK 314


>gi|301381178|ref|ZP_07229596.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           tomato Max13]
          Length = 1063

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/595 (11%), Positives = 160/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRASFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTELDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGPDGEITRLKDVARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+ G        +         GS   
Sbjct: 283 LLNNQPAVAMPIFQRPGSNAIDISNDVRARMAELKKGFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVVLFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVEATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKAHDAPKDRFSRFLDKILGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQD 577



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 90/271 (33%), Gaps = 18/271 (6%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   D  G +++       + L+      ++     +   N                
Sbjct: 785  QQFRQDADQIGQLKVRNNLGEMIPLATFVKVSDTAGPDRVMHYNGFITAEINGAAAPGFS 844

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAMLI 682
               AQT V +++++++                  ++ + I  G   + +      +A L+
Sbjct: 845  SGQAQTAVEKLLREELP--------NGMVYEWTDLTYQQILSGNTALFVFPLCVLLAFLV 896

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                   W   L  I  + + +   +    + G + N+     ++ L+G +  + +++ +
Sbjct: 897  LAAQYESWSLPLAVILIVPMTLLSAIAGVIIAGSDNNIFTQIGLIVLVGLACKNAILIVE 956

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +         +S  D + ++    L   + TS A  + V+P+ +    G  +  +  +
Sbjct: 957  FAKD---KQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGV 1013

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  G++      + +     + I ++  + 
Sbjct: 1014 AVLSGMLGVTFFGLLLTPVFYVLIRNYVGRQ 1044



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +   +   K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVEATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|78779255|ref|YP_397367.1| preprotein translocase subunit SecF [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712754|gb|ABB49931.1| protein translocase subunit secF [Prochlorococcus marinus str. MIT
           9312]
          Length = 304

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 116/230 (50%), Gaps = 8/230 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             + S +    + +      N L+ ++           ++  +   I  +   S      
Sbjct: 77  RVISSNKNFINNIKLQFQNNNKLISIRTPYLSIEESNNLITNLDNIIGPLNYESKDSRL- 135

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GPK+ + L+   +  +++S  A+ +YI IRF   +AL A+  L  D+    G F+  G
Sbjct: 136 -IGPKLGKRLLTNCVTSLLVSLFAISLYITIRFDKKYALFALLALFHDLLIVFGIFSWLG 194

Query: 716 I----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           I    E N     ++LT+ GYSVND VV++DR+R+N+K  +    + + I  S+NE+  R
Sbjct: 195 IILSVEVNSLFAVSLLTIAGYSVNDTVVIFDRIRENLK--SKEEGYNETIQLSVNESFRR 252

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + +TS+   I +L + ++G   +  F++ ++ GI+V + SSI +A  +LL
Sbjct: 253 TTFTSITTLIPLLSIILFGSYSLFWFSLALSLGIIVGSYSSILLAPSLLL 302


>gi|296284697|ref|ZP_06862695.1| preprotein translocase subunit [Citromicrobium bathyomarinum JL354]
          Length = 325

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 169/302 (55%), Gaps = 6/302 (1%)

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +    L+PD   I+F+R R     +S++  I S   +FT GLNYG+DF GG ++ +   +
Sbjct: 1   MKLLKLVPDDTNIKFLRWRVPFYIVSVVLMILSWVAVFTMGLNYGVDFAGGQEVRLTFQQ 60

Query: 588 P--VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRVLEMVKKKI 642
                +  +R  +  L  G+   Q F       +R+           A T +   V   I
Sbjct: 61  QNEAPIPQLRDLVGDLGYGEPVVQEFGQPNQVSIRVPLPEDVENTPGAATEIGNKVIAAI 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            +  P +     + V  K++ E   + +  ++ +  A+ IYIW+RF+W F +GA+  L+ 
Sbjct: 121 DQQYPDARTDGNDTVSGKVAGEFRERALWALLAAMAAIAIYIWVRFEWQFGVGALFALVH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D++ T+GFFA+  +EF+L  +AA+L +IGYS+ND +VVYDR+R+N+K +   +   +L+D
Sbjct: 181 DVSLTMGFFAITQLEFSLQIIAAILAIIGYSLNDTIVVYDRIRENLKKFRK-MPVPELLD 239

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            S+NETL R++ TS+   ++++P+ ++G + +      +  GI +   SSI++AAPIL++
Sbjct: 240 LSVNETLARTIMTSLTLLVALIPLLLFGPASLFGMVAAITLGIFIGTYSSIYMAAPILIW 299

Query: 823 IY 824
           + 
Sbjct: 300 MG 301


>gi|78048233|ref|YP_364408.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036663|emb|CAJ24354.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1056

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 66/613 (10%), Positives = 156/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PVFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKAVTQVIEQQLTGIDHLLYFNSSSAANGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D         +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSIDRDALNDIVGSRVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G     +   
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPEGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPEQFENIILRTDNNGATVRLKDVARVTVGPSNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E  G     L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSEAVGAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVIHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A+S   A+            +    ++ D   
Sbjct: 457 SLQPGASGAIYKQFALTIAMSMGFSAFLALSFTPALCGAFLKSTHSTKKNWVYRTFDKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R+  W +    L  +C        G     + +G     V    
Sbjct: 517 DKLAHRYVGVVGHTLKRSPPWMIAFVALVVLCGFLFTRMPGSFLPEEDQGFAVAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
                        
Sbjct: 577 GATKIRTNEAFAQ 589



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLLVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         + R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 949  VEQRAA---GKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANSRHSIGTGV 1005

Query: 802  AFGIVVAA-SSSIFIAAPILLFIYDW 826
              G+V A     IFI  P+   +   
Sbjct: 1006 IGGMVFATVLGVIFI--PLFFVVVRR 1029



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 477

Query: 805 IVVAASSSIFIAAPI 819
           +  +A  ++     +
Sbjct: 478 MGFSAFLALSFTPAL 492



 Score = 42.0 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 45/527 (8%), Positives = 138/527 (26%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+ PW++   +++   G L        +      P              +G +  ++++ 
Sbjct: 533  RSPPWMIAFVALVVLCGFL------FTRMPGSFLPEED-----------QGFAVAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT----------LSFADSRFKENI 111
                          ++R+ L+K+      ++                 +       ++  
Sbjct: 575  PPGATKIRTNEAFAQMRAVLEKQPAVEGMLQIAGFSFLGSGENVGMGFIRLKPWEERDVT 634

Query: 112  ADKVTLFLQGVNSKLNVD----PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A+++   L G    +            +    +     +  Q+         I     ++
Sbjct: 635  AEQLIQQLNGAFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALINARNIVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +  ++             +   +QL    D  + + +    + +               
Sbjct: 695  GKAAEKQDTLVGVRPNGLENSPQLQLH--VDRVQAQSMGLDVSDIYSSIQ---------- 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                 L     N Y  E +++   +  +                 +       +   +  
Sbjct: 743  ---LMLAPVYVNDYFAEGRIKRVNMRADDQFRAGPESLRNFFTPSATATGADGQPAMIPL 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
             N+ K         +      +     G     G+     + +   +          +  
Sbjct: 800  SNVVKAEWNYASPALNRYNGYSAVNIVGNPAPGGSSGQAMSAMEDIVNNDLPPGFGFDWS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                     G+ +      ++V   + +            ++    I +   +T ++L  
Sbjct: 860  GMSYQEIIAGNAATLLLALSVVVVFLCLAALYESWSIPVAVLLVVPIGVLGAITFSMLRG 919

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            L     L    G++  IGLA  + IL+ E   E+    +++  +        +  I  ++
Sbjct: 920  LPN--DLYFKIGMITVIGLAAKNAILIVEFAVEQRAAGKTLREATLEAAHLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               ++  + L      G  +       +   ++ +    +  +    
Sbjct: 978  FAFILGVLPLAISTGAGANSRHSIGTGVIGGMVFATVLGVIFIPLFF 1024


>gi|291567209|dbj|BAI89481.1| putative multidrug efflux pump [Arthrospira platensis NIES-39]
          Length = 1107

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 62/582 (10%), Positives = 155/582 (26%), Gaps = 36/582 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G++       P   + + P  +   +I++       + + +  D
Sbjct: 10  KRPVLTTVCSILIVLVGVISI-----PLLPISQLPQ-LANTQINV-------TAVNIGAD 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
            +      +    +   + +        +        ++++F  +  ++     V   + 
Sbjct: 57  AET-TETTVTSILEREINGVDNMRYISSNTANNGVANVSVAFPVNVDRDIAQVNVNNRVS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-----VISHAIEQSMEIIRQRIDQIG 175
              S L    ++  +         +++     D       I   +  S  +    +D+I 
Sbjct: 116 QAASSLPDVVQQVGITVEASSPSILLVLGFYSDTDQNNQPIYDDVFISNFLDLNVLDEIT 175

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            +               +    +P ++         +       N        G      
Sbjct: 176 RAPGVGSVTILGERRYAMRIWLNPQKMAARGLVAQDVVAALRQQNIQVGAGKIGQAPTPP 235

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
               +  +  +  +                 +    +                 +     
Sbjct: 236 DQRFEIPLRAQGRL-------------RDVSEFEELVVAVGNDGTLIRITDVGRVELGAQ 282

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                               +   +   T E        L A   P     +        
Sbjct: 283 DYNLDATYNNQAAVGMAVYQRPGSNALETAEAVKSKMQELSASFPPGVRYAIPYDTTLFV 342

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV++V+F+ +   +  L+   +I + +I ++A L ++G  L   
Sbjct: 343 QASLQEVVITLLQTITLVILVIFVFLQDWRTTLIPTIAIPVALIGSMAGLKVMGFELNTL 402

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIAT 474
           ++ G  L  GL VD  I++ E +  +  +      +          +TI  S +   +  
Sbjct: 403 TLFGCTLAAGLVVDDAIVIVEAVSSKIAQGMKPRQAALDAMEELTGATISTSLVLLAVFI 462

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V FF G      + F++T+  +I+ S F A+S    M   ++R  K     +      F
Sbjct: 463 PVAFFPGTTGIIFQQFSLTITFAIICSTFNALSFSPTMAGVLLRPAKKTKGPLGWFFEKF 522

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
                            +       +          +     
Sbjct: 523 NQGFGFIQNQYAKLIRFLVRINTLVMGIFIGGLVLTVLMYGW 564



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 75/244 (30%), Gaps = 6/244 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R  L +      +  N        V  +           V   +++      P   
Sbjct: 272 TDVGRVELGAQDYNLDATYNNQAAVGMAVYQRPGSNALETAEAVKSKMQELSASFPPGVR 331

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                     +   L    I  +    + +L+       W   L     + + +  ++  
Sbjct: 332 YAIPYDTTLFVQASLQEVVITLLQTITLVILVIFVFLQDWRTTLIPTIAIPVALIGSMAG 391

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G E N   +       G  V+D +V+ + +          +  R     ++ E  G
Sbjct: 392 LKVMGFELNTLTLFGCTLAAGLVVDDAIVIVEAV---SSKIAQGMKPRQAALDAMEELTG 448

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++ TS+      +P+A + G+       F++ + F I+ +  +++  +  +   +    
Sbjct: 449 ATISTSLVLLAVFIPVAFFPGTTGIIFQQFSLTITFAIICSTFNALSFSPTMAGVLLRPA 508

Query: 828 AKNA 831
            K  
Sbjct: 509 KKTK 512



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 18/180 (10%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAV--- 723
              IV   +  +   + +  +++ Y   L  +  + L +   L              +   
Sbjct: 879  AAIVIFGLGFVIAFLVLSAQYESYIDPLIIMLAVPLAVLGALAAIWFRSNVLMAGGIWPV 938

Query: 724  --------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
                     A++ LIG +  + +++ +      +L    +S       +  +       T
Sbjct: 939  VNNDVYAQVALVMLIGLASKNSILIVEFAN---QLRDKGLSINKAAALAAEQRFRPIQMT 995

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++++ +   P+ +    G S   S    +  G++V    S+ I   + + I +  A+  +
Sbjct: 996  AISSLVGFWPLVIASGAGASSRWSLGTAIFGGMLVGTLLSLLITPNLYIAIKNLEARFLK 1055


>gi|303228950|ref|ZP_07315760.1| putative multidrug efflux pump BpeF [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516364|gb|EFL58296.1| putative multidrug efflux pump BpeF [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 1069

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/693 (12%), Positives = 202/693 (29%), Gaps = 33/693 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  MI  IGLL  +        + R+P   P +              +     
Sbjct: 8   RPIFAIVIAIMITLIGLLSMV-----NLPVARYPQISPPSVR---------VSTMYTGAT 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +N  +    +     ++                ++L F      +         +Q 
Sbjct: 54  PQVLNDTVASVIESQIVGVQDLDYMTSDSASTGTYSLSLQFNQGSDPDMDTVNTQNRVQA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + ++  + TT        +   N       +           +D I   +   
Sbjct: 114 ALAQLPSEVQQVGVTTTKSSGDMAYIFSLNSPNGTFDSTFLKNYGTNYLMDAIKGVKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DPS++++L  T + ++      N        G          QY
Sbjct: 174 SVQEFGS-DYAMRIWLDPSKMQKLGITMSDVTSAIKSQNVQAAAGTVGKNPTNGEQAFQY 232

Query: 242 LVE-DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            ++ D   ++              T   + DI+  ++GA+ +  V + +   P A   + 
Sbjct: 233 PIKIDGRLVTEQQFGNIVIKNSNGTVLHLKDIARIDVGAKGYDFVAKSSYRDPNAPSGEI 292

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          S +   +   TI     +                   N      S +
Sbjct: 293 LFVEHRPSAGFAISLQNDANALETISNVQKILQEQSKSFPQDLEYHEVVDNTKFVRASIN 352

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T      LVLIV+++ +   +  L+   ++ ++++ T     LL  ++   ++  +
Sbjct: 353 EVEHTFFEALLLVLIVVYVFLQSWRSTLIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAM 412

Query: 421 VLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +  E      S   +           +           + + F
Sbjct: 413 VLAIGLVVDDAIVVVEAVEYELKYNGLSPKEAAIAAMKNVQGPVVGIAFVLAAVFIPVAF 472

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDI 525
            GG      + FA+T+ +S+ IS   A+ +  ++   +             ++++   + 
Sbjct: 473 MGGMTGILYKQFALTIAVSVAISAVVALILTPSLCALMLKPHVQNEREDFVHRQLNKFNR 532

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +A    R     + + +  +   I   F        +  G   + V  
Sbjct: 533 GLERFSDWYGKVLARLSHRLSLTVITLLVFAAGTGIVFHFLPTSFVPAEDSGYFLIAVNE 592

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                 +     L+ ++               +  +        +Q     +    + + 
Sbjct: 593 PPGATSARTVETLDKIKDFLEQTPGIKDNVEQVFTVSGFDLLGGSQKSSAGVSFAVLKDW 652

Query: 646 VP-LSTIQNTEIVGPKISRELIRKGIVGVIISA 677
               S+ Q+   +   +     +      +++ 
Sbjct: 653 DQRKSSNQSVNAMVGAVFGFGAKNVPEASVVAL 685



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T G F L     N   + A++  IG  V+D +VV + +    
Sbjct: 375 SWRSTLIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIVVVEAV--EY 432

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +L    +S ++    ++    G  V  +       +P+A  GG        FA+ +A  +
Sbjct: 433 ELKYNGLSPKEAAIAAMKNVQGPVVGIAFVLAAVFIPVAFMGGMTGILYKQFALTIAVSV 492

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A  ++ +   +   +  
Sbjct: 493 AISAVVALILTPSLCALMLK 512



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 68/202 (33%), Gaps = 14/202 (6%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            + ++              T   G +   EL       +I+      +++    +   W  
Sbjct: 857  DAIQALKDAAAKTLPAGYTYDWGDQSREELKAGSQTMLILGLGLTFVFLILAALYESWKV 916

Query: 693  ALGAITTLILDITKTLGFFALFGIEF------NLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                + ++   +        L           ++     +LTL+G +  + +++ +  + 
Sbjct: 917  PFAVLFSVPSGMIGAALVPFLLNFTGRFQLANDIYMQIGLLTLVGLAAKNAILIIEYAK- 975

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
             +++    +   D   ++    L   + TS A  + VLP+A+    G     S  I +  
Sbjct: 976  -IRVDERGMDVVDAAIEAAKIRLRPILMTSFAFILGVLPLAISTGAGSGARTSMGITVVA 1034

Query: 804  GIVVAASSSIFIAAPILLFIYD 825
            G+  A    IFI   + + I  
Sbjct: 1035 GMTTATFFGIFIIPMLFIIIEK 1056


>gi|289665524|ref|ZP_06487105.1| RND superfamily protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1056

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 66/613 (10%), Positives = 156/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PVFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKAVTQVIEQQLTGIDHLLYFNSSSAANGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D         +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSIDRDALNDIVGSRVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G     +   
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPEGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPEQFENIILRTDNNGATVRLKDVARVTVGPSNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E  G     L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSEAVGAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVVHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A+S   A+            +    ++ D   
Sbjct: 457 SLQPGASGAIYKQFALTIAMSMGFSAFLALSFTPALCGAFLKSTHSTKKNWVYRTFDKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R+  W +    L  +C        G     + +G     V    
Sbjct: 517 DKLAHRYVGVVGHTLKRSPPWMIAFVALVVLCGFLFTRMPGSFLPEEDQGFAVAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
                        
Sbjct: 577 GATKIRTNEAFAQ 589



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 56/145 (38%), Gaps = 7/145 (4%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     + T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLMVVPIGVLGAITFSMLRGLPNDLYFKIGMTTVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         + R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 949  VEQRAA---GKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANSRHSIGTGV 1005

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW 826
              G+V A    + I  P+   +   
Sbjct: 1006 IGGMVFATVLGL-IFIPLFFVVVRR 1029



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 477

Query: 805 IVVAASSSIFIAAPI 819
           +  +A  ++     +
Sbjct: 478 MGFSAFLALSFTPAL 492



 Score = 44.7 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 49/527 (9%), Positives = 136/527 (25%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+ PW++   +++   G L        +      P              +G +  ++++ 
Sbjct: 533  RSPPWMIAFVALVVLCGFL------FTRMPGSFLPEED-----------QGFAVAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT----------LSFADSRFKENI 111
                          ++R+ L+K+      ++                 + F     ++  
Sbjct: 575  PPGATKIRTNEAFAQMRAVLEKQPAVEGMLQIAGFSFLGSGENVGMGFIRFKPWEERDVT 634

Query: 112  ADKVTLFLQGVNSKLNVD----PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A+++   L G    +            +    +     +  Q+         I+    ++
Sbjct: 635  AEQLIQQLNGAFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALIQARNIVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +  ++             +   +QL  ++  ++   L  +    S   +L       + 
Sbjct: 695  GKAAEKQDTLVGVRPNGLENSPQLQLHVDRVQAQSMGLDVSDIYSSIQLMLAPVYVNDYF 754

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
               R              +V +                  P    +  +           
Sbjct: 755  AEGRI------------KRVNMRADDQFRVGPESLRNFFSPSATATGADGQPAMIPLSNV 802

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
              +    A     R      +N          SG        I+   L  G       + 
Sbjct: 803  VKVEWNYASPALNRYNGYSAVNIVGNPAPGGSSGQAMSAMEDIVNNDLPPGFGFDWSGMS 862

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
             +  +  +  +  +      +   L  +            +     + + V+  +    L
Sbjct: 863  YQEIIAGNAATLLLALSVVVVFLCLAAL-----YESWSIPVAVLMVVPIGVLGAITFSML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G    L    G+   IGLA  + IL+ E   E+    +++  +        +  I  ++
Sbjct: 918  RGLPNDLYFKIGMTTVIGLAAKNAILIVEFAVEQRAAGKTLREATLEAAHLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               ++  + L      G  +       +   ++ +    +  +    
Sbjct: 978  FAFILGVLPLAISTGAGANSRHSIGTGVIGGMVFATVLGLIFIPLFF 1024


>gi|288962857|ref|YP_003453151.1| hydrophobic/amphiphilic exporter-1 [Azospirillum sp. B510]
 gi|288915123|dbj|BAI76607.1| hydrophobic/amphiphilic exporter-1 [Azospirillum sp. B510]
          Length = 1043

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 63/554 (11%), Positives = 150/554 (27%), Gaps = 41/554 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   G +       PQ  + R+PS  P               + +   
Sbjct: 7   QRPVFAWVIALFIILFGAIAI-----PQLPIARYPSVAPPA-------------VSISAT 48

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +       +T +F      +     V 
Sbjct: 49  YPGASPQTMNDGVISLIERELSSVKNLLYFESVTDASGTATVTATFRPGTDPDLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V  +L    ++N L   +     +++     D         S  + R  ++++  
Sbjct: 109 NKLKSVEPRLPQTVRQNGLTVESSTSGFLMIVGLKSDDGRFDETALSDYMARNIVEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +     P++L     +   ++      N        G       
Sbjct: 169 IDGVGRVQLFGS-EQAMRVWVHPAKLVAHGLSMGDLTAAINQQNVQIAPGSIGAAPAPSE 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +        +        +      
Sbjct: 228 QAVTVPLTVRGQLT-------------TPEEFAGIVLRATPDGSKVTLGDVARVELGAKS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T E        L           +         
Sbjct: 275 YSFINRENGKATTAASVQLTPGGNAVRTAEGVQARMEELSRTLPTGMSYSIPFNTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T A    LV +V+++ +   ++ L+      + ++ T A++   G ++ + +
Sbjct: 335 VSIEKVIQTLAEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALLGTFAVMLAAGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +     ++  S   +           +    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERIMAKEGLSPRDATVKAMKEITGAVIGITLVLTAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +    G      R F ++M ++IL S F A+++  A+   ++R              +F
Sbjct: 455 PMALASGSVGVIYRQFTLSMAVAILFSAFLALTLTPALCATLLRPVDPAHHGKRGFFGWF 514

Query: 533 LIPDCIAIQFMRAR 546
                   Q    R
Sbjct: 515 NRGFDRLTQGYERR 528



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 87/247 (35%), Gaps = 14/247 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +                G++V     ++   ++++  +
Sbjct: 258 SKVTLGDVARVELGAKSYSFINRENGKATTAASVQLTPGGNAVRTAEGVQARMEELSRTL 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I K I  +  + + + + +++     R+    A+ A   L 
Sbjct: 318 PTGMSYSIPFNTAPFVKVSIEKVIQTLAEAMVLVFLVMYLFLQNVRYTLIPAIVAPIAL- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T       G   N+  +  ++  IG  V+D +VV + +     +    +S RD  
Sbjct: 377 ---LGTFAVMLAAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMAKEGLSPRDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            K++ E  G  +  ++      +PMA+  GSV      F + MA  I+ +A  ++ +   
Sbjct: 432 VKAMKEITGAVIGITLVLTAVFIPMALASGSVGVIYRQFTLSMAVAILFSAFLALTLTPA 491

Query: 819 ILLFIYD 825
           +   +  
Sbjct: 492 LCATLLR 498



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 63/152 (41%), Gaps = 7/152 (4%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              +G + + +S + + + +   ++ W   +  +  + L +   +    L G+  ++    
Sbjct: 863  TAQGPMLMALSMLVVFLVLAALYESWAIPVSVMLVVPLGLLGAVLAVMLRGLPNDVYFKV 922

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++T+IG S  + +++ +  +   +L    +   +    +    L   + TS+A  + V+
Sbjct: 923  GMITVIGLSAKNAILIVEFAK---QLRAEGMGLVEAAVAAARLRLRPILMTSLAFGLGVV 979

Query: 785  PMAVWGG---SVIGSFAIPMAFGIVVAASSSI 813
            P+ +  G       +    +  G++ A   +I
Sbjct: 980  PLMIAMGASAETQHAIGTGVFGGMLSATVLAI 1011


>gi|213970394|ref|ZP_03398523.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           tomato T1]
 gi|302058555|ref|ZP_07250096.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           tomato K40]
 gi|302132591|ref|ZP_07258581.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213924865|gb|EEB58431.1| multidrug efflux RND transporter MexF [Pseudomonas syringae pv.
           tomato T1]
          Length = 1063

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/595 (11%), Positives = 160/595 (26%), Gaps = 34/595 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRASFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTELDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 TEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGPDGEITRLKDVARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+ G        +         GS   
Sbjct: 283 LLNNQPAVAMPIFQRPGSNAIDISNDVRARMAELKKGFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+V
Sbjct: 343 VIHTLFEALILVVLVVVLFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +            +     +     I  + +      V   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIELGLEPVEATHKAMAEVTGPIIATALVLCAVFVPAAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD-- 536
              G   + FA+T+ +S +IS F ++++  A+   +++         +      L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLKAHDAPKDRFSRFLDKILGGWLF 522

Query: 537 -CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                 F +A    VG        S   L  +     + + G            D
Sbjct: 523 RPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWLGFASTPTGFVPSQD 577



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 90/271 (33%), Gaps = 18/271 (6%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   D  G +++       + L+      ++     +   N                
Sbjct: 785  QQFRQDADQIGQLKVRNNLGEMIPLATFVKVSDTAGPDRVMHYNGFITAEINGAAAPGFS 844

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAMLI 682
               AQT V +++++++                  ++ + I  G   + +      +A L+
Sbjct: 845  SGQAQTAVEKLLREELP--------NGMVYEWTDLTYQQILSGNTALFVFPLCVLLAFLV 896

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                   W   L  I  + + +   +    + G + N+     ++ L+G +  + +++ +
Sbjct: 897  LAAQYESWSLPLAVILIVPMTLLSAIAGVIIAGSDNNIFTQIGLIVLVGLACKNAILIVE 956

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +         +S  D + ++    L   + TS A  + V+P+ +    G  +  +  +
Sbjct: 957  FAKD---KQAEGMSPLDAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGV 1013

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  G++      + +     + I ++  + 
Sbjct: 1014 AVLSGMLGVTFFGLLLTPVFYVLIRNYVGRQ 1044



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 63/140 (45%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLVAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFGI 805
           L    +   +   K++ E  G  + T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GLEPVEATHKAMAEVTGPIIATAL-VLCAVFVPAAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAFNSLTLSPALAAVLLK 500


>gi|86148992|ref|ZP_01067224.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88597374|ref|ZP_01100609.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|85840350|gb|EAQ57607.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|88190435|gb|EAQ94409.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni 84-25]
 gi|315927831|gb|EFV07156.1| Putative aminoglycoside efflux pump [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 1036

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/682 (10%), Positives = 181/682 (26%), Gaps = 36/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---KMKSIDINPLSRFFL 533
             G  G   R FA+T+ +S+ IS F A+++  ++    +R       K +        + 
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                A      +     + I   +          +   +  +    L +        S 
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPSSLVPEEDQGLMIGIINLPSASA 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +  +          +G K+ +  + +    S  +     M            +   
Sbjct: 582 LHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLKDWKDRNVSADE 641

Query: 654 TEIVGPKISRELIRKGIVGVII 675
             +   K          + + +
Sbjct: 642 IAMELNKKFAFDRNASSIFIGL 663



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 81/253 (32%), Gaps = 14/253 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWRA---KNAR 832
            + ++     K  R
Sbjct: 1024 LENFNEWLDKKKR 1036


>gi|153950964|ref|YP_001398590.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. doylei 269.97]
 gi|152938410|gb|ABS43151.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 1040

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 185/683 (27%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGVI-----GLTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSATLAAISMYSSDGSMSAVDVYNYIALNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFKITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNDDGSFLRLKDIADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        I + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIIINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VIKTFIEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFIPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  + +          F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVRKFNDFFDWS 521

Query: 537 CIAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    ++  R     +     + +I  L     N  +  +    + +        S
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGTIFYLNKAVPNSLVPEEDQGLM-IGIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHISQEVLKTNGIKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
              +   K          + + +
Sbjct: 641 KIAMELNKKFAFDRNASSIFIGL 663



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DIADVEIGSQQYSSQGRLNGNDAVPIIINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ I   I + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVIKTFIEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + +       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFIPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  +I
Sbjct: 1024 LENFNEWLDKKRGKI 1038


>gi|163731963|ref|ZP_02139410.1| RND multidrug efflux transporter protein [Roseobacter litoralis Och
           149]
 gi|161395417|gb|EDQ19739.1| RND multidrug efflux transporter protein [Roseobacter litoralis Och
           149]
          Length = 1043

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/526 (13%), Positives = 159/526 (30%), Gaps = 40/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++ +++  +GL+           +++FP+  P               + +   
Sbjct: 8   KRPKMAIVISTVLTLMGLVA-----YSVIPVEQFPNITPPV-------------VNVTAS 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++      + + +   E +   S          ++++F            V 
Sbjct: 50  YIGANAETVESTVAAPIEAEVNGVEDMIYMSSDSSDTGSYSLSVTFDVGTDPTIATVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    S L V+     +VT       ++++           +  S        D +  
Sbjct: 110 NRVSQAMSGLPVEVTSTGVVTEKSSTSMLLVATLFSPNGTYDEVFLSNYASINLKDALAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP R+  L  T A +       N +      G     D+
Sbjct: 170 VPGVGKAEVLTDFAYAMRIWMDPDRMTGLGVTQADVMSAIRDQNLTVSAGQIGAPPAPDN 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY V  +  ++                +    I                 I    + 
Sbjct: 230 QQFQYSVTAQGRLA-------------TVAEFENIIIRTGDSGGVLRMKDIARIELGASS 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +              L           V   +     
Sbjct: 277 YGVSGRYEGQPATVLAVYQAPGENALTVAAGVYSELERLSQAFPQDVTYEVPFDSTDFVE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S +    T  +   LV+ V+F+ +   +  L+   +I +++I T A L L+G TL   S
Sbjct: 337 QSLNDVVSTLILTFVLVMSVVFVFLGSARATLIPAVAIPVSLIGTFAFLLLMGMTLNTIS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +      +  S   +     ++  + +  + +  L   V
Sbjct: 397 LFALVLAIGIVVDDAIIVVENVERVIAEEGLSPAEATAKAMTQITTPVIATTLVLLAVFV 456

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
            + F  G +      FA+T+ ++++IS   A+++  A+   +++ +
Sbjct: 457 PVTFMPGISGQLFSQFAVTISVAVVISSINALTLSPALCAIVLKKR 502



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 89/244 (36%), Gaps = 6/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +           +S +        L   Q    +++     +    +++++  P     
Sbjct: 266 DIARIELGASSYGVSGRYEGQPATVLAVYQAPGENALTVAAGVYSELERLSQAFPQDVTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLILDITKTLGFF 711
                      + +   +  +I++ + ++ +           L     + + +  T  F 
Sbjct: 326 EVPFDSTDFVEQSLNDVVSTLILTFVLVMSVVFVFLGSARATLIPAVAIPVSLIGTFAFL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G+  N  ++ A++  IG  V+D ++V + +     +    +S  +   K++ +    
Sbjct: 386 LLMGMTLNTISLFALVLAIGIVVDDAIIVVENV--ERVIAEEGLSPAEATAKAMTQITTP 443

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + T++      +P+       G +   FA+ ++  +V+++ +++ ++  +   +   R+
Sbjct: 444 VIATTLVLLAVFVPVTFMPGISGQLFSQFAVTISVAVVISSINALTLSPALCAIVLKKRS 503

Query: 829 KNAR 832
              +
Sbjct: 504 GPPK 507



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 77/202 (38%), Gaps = 9/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +     E +                ++L   G V ++++A  +  Y+++      W  
Sbjct: 834  DAIAVLQEEALTALPPGYAYEWTGTAQQQLDAGGTVIIVLAAAIIFGYLFLVAQYESWTM 893

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             LG + ++ + +   L    +   + NL     ++ LIG +  + +++ +   +      
Sbjct: 894  PLGILLSVTVALFGALAAVLVTAGDVNLYTQIGMIMLIGLASKNAILIVEFAMEQRAA-- 951

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S R+   ++  +     + T+++  + V+P+ V    G +   +  I +  G++ A 
Sbjct: 952  -GASIREAALQAARQRFRAVMMTALSFLLGVVPLLVASGAGAASQKAIGIAVFGGMLAAT 1010

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
               + +   + + +   R K  
Sbjct: 1011 VIGVIVVPVLYVLLQSLREKIK 1032


>gi|51598908|ref|YP_073096.1| preprotein translocase subunit SecF [Borrelia garinii PBi]
 gi|51573479|gb|AAU07504.1| protein-export membrane protein [Borrelia garinii PBi]
          Length = 299

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 138/300 (46%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +   I      + F  V + + F        +  G N+GIDF   + + +   +      
Sbjct: 1   MQRVINFSKYGSNFLIVSVILTFIGLIYTFFYHGGYNWGIDFSPRVNINLSIEKSDIKEN 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
               + S     +   +                  +        V+K I + +  +   N
Sbjct: 61  EIKRIFSPIYKALDVNSIFSPNENKSEFSIMVKSDIIDYAFKTEVQKTIMDELKKTFNTN 120

Query: 654 TEI-----VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            E+     +    S  L  K I+ V+ +   +LIYI +RFK  +A+ +I     DI   +
Sbjct: 121 IEVLDSYFIDSSFSSTLRIKSILLVLGTFTLILIYITLRFKLSYAIASILATFHDIFFIV 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  +F IE N   + A+LT+IGYS+ND ++++DR+R N++   T  +F ++++ SI++T
Sbjct: 181 AFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVRRL-TDNTFLNVLNISISQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R+V TS+  F++V  + V+    I  F++    G++V   SS+FIA+PILL +Y    
Sbjct: 240 LSRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK 299


>gi|149187481|ref|ZP_01865779.1| putative multidrug efflux membrane fusion protein [Vibrio shilonii
           AK1]
 gi|148839017|gb|EDL55956.1| putative multidrug efflux membrane fusion protein [Vibrio shilonii
           AK1]
          Length = 1037

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/661 (10%), Positives = 172/661 (26%), Gaps = 46/661 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   GLL       P   +  FP+  P               + +    
Sbjct: 9   RPKFAFVISIVLTLSGLLSI-----PALPVAEFPNISPPM-------------VSVTTSY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       + + +   E +     +   +    + ++F      +     V  
Sbjct: 51  PGASAEVVADTVSKVIEAEVNGVENMIYMESKGANDGSYSLNVTFEVGTNVDMAQVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q    +L  + ++N +    +    +++            +  +  +     D +   
Sbjct: 111 RVQQAMPRLPQEVQRNGVKVEKQDPNILMMLNLVSPDGSLDNLFLNNYMGINIKDNLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +      +   +    +P R+  L  T  +        N        G   +    
Sbjct: 171 NGVSKVSIIGGMDYSMRIWLNPDRMASLGVTVEEAIASIQEQNIQVAAGRIGAAPVPRDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +S                +    I          +      I    A  
Sbjct: 231 QFQYTLSTKGRLS-------------HPEEFEQIIIRSNPDGSAVYMSDIARIELGAASY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L             +  +     +      + LR          V          
Sbjct: 278 DAEAMLDNKPSALLFIYQSSGANALEVAKGVHEELSRLREQFPEDMDYKVLYDTTQFVET 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   LV+ V+++ +   +  LV   +I ++++ T A L   G ++   S+
Sbjct: 338 SIDEMIETLLIAVALVIFVVYIFLQDVRQTLVPAIAIPVSLVGTFAFLLATGMSINTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD  I+V E        +  +   +           +  + +  L     
Sbjct: 398 FALILAIGIVVDDAIVVVENTTRLMEEEGLNAVDATTKSMQEVTGPVIATTLVLLAVFAP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINP 527
                   G     F+IT+ +S+LIS   A+++  A+   +               ++  
Sbjct: 458 TAVMPGITGQMYAQFSITICISVLISSVNALTLSPALCASLLKPPKTHEKGFHAKFNVLF 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   + ++    +    GV    L                  + K    + V    
Sbjct: 518 EKATGKYTNFVSGMVRKLMLVGVVYVALIGATGYLATSLPTGFVPTEDKKAFFVDVQLPN 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++  +  +  +              +           S     ++ ++        P
Sbjct: 578 GSSINRTKEVMTQMVDELNQMDGVTNVISASGYSIISGAVSSNAGLMVVILSHWDERQDP 637

Query: 648 L 648
            
Sbjct: 638 S 638



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 54/443 (12%), Positives = 135/443 (30%), Gaps = 20/443 (4%)

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
            L+ +     + S +G  + I  AV SN  +   I     + Q           RA + + 
Sbjct: 595  LNQMDGVTNVISASGYSI-ISGAVSSNAGLMVVILSHWDERQDPSLVESQIVRRANAALS 653

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              +        +    G G V G    +  ++  +      ++RAM I      ++ +  
Sbjct: 654  QYSEATAAGFSLPALPGVGTVSGVEFYIQDTLGRTPAELAGVMRAMSIQATSEPELTTAF 713

Query: 525  INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGV 583
                +    +   +     + +   +          +  ++ +  N +G  F+  +Q   
Sbjct: 714  STFQADVPQLFVDVDRNKAKVQGVELSSIFTTLQTMLGSMYVNDFNRFGKVFRVNMQAET 773

Query: 584  LANRPV---------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                           +   V   L +L   +         +  L                
Sbjct: 774  EFRDSDRDIARFYIRNKYDVMVPLNTLVNVEPKLGPEYINQFNLYSAVKVNAFPAPGYSS 833

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWY 691
             + +               T     +  +EL    +   I +   +  Y+++      W 
Sbjct: 834  GQAIDAVKRIADTTFPNGYTYEWSGQTYQELKAGNLAPFIFTLALIFTYLFLVAQYESWT 893

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  +  + + I     +  + G + NL     ++ LIG +  + +++ +  +   +L 
Sbjct: 894  IPVSVMLAVPVAILGAFIYIWIMGSDVNLYTQIGLVLLIGLACKNAILIVEFAK---QLR 950

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
             + +S  D   K+        + T+ +  + V+P+ +    G +   S    +  G++ A
Sbjct: 951  ESGMSITDSAIKAARLRFRAVLMTAFSFILGVIPLVIATGAGAASRVSLGYAVMGGMIAA 1010

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
                  +     + +   R K  
Sbjct: 1011 TIVGTCLVPVFYVMLQSLREKVK 1033



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/206 (15%), Positives = 82/206 (39%), Gaps = 14/206 (6%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             L  ++++  E +    + +T         E+I   ++ V +    + I++        
Sbjct: 310 EELSRLREQFPEDMDYKVLYDTTQFVETSIDEMIETLLIAVALVIFVVYIFLQ---DVRQ 366

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMK 749
            L     + + +  T  F    G+  N  ++ A++  IG  V+D +VV +   R+ +   
Sbjct: 367 TLVPAIAIPVSLVGTFAFLLATGMSINTVSLFALILAIGIVVDDAIVVVENTTRLMEE-- 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                ++  D   KS+ E  G  + T++       P AV     G +   F+I +   ++
Sbjct: 425 ---EGLNAVDATTKSMQEVTGPVIATTLVLLAVFAPTAVMPGITGQMYAQFSITICISVL 481

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           +++ +++ ++  +   +      + +
Sbjct: 482 ISSVNALTLSPALCASLLKPPKTHEK 507


>gi|57168506|ref|ZP_00367639.1| transmembrane efflux protein Cj0366c [Campylobacter coli RM2228]
 gi|57020011|gb|EAL56688.1| transmembrane efflux protein Cj0366c [Campylobacter coli RM2228]
 gi|225423366|gb|ACN91193.1| CmeB [Campylobacter coli]
          Length = 1040

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 184/683 (26%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLVNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  + +          F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 537 CIAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    ++  R     +     + +I  L+    N  +  +    + +        S
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEEDQGLM-ISIINLPSAS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   +  +          +G K+ +  + +    S  +     M            +  
Sbjct: 581 ALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLQDWKDRNVSAD 640

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
                  K          V + +
Sbjct: 641 QIIAELNKKFAFDRNASSVFIGL 663



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 83/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  + + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       D   ++ 
Sbjct: 906  GSFLLVYLRGFTNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKKIFDAAIEAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   V TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIVMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|289665549|ref|ZP_06487130.1| preprotein translocase subunit SecF [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289667767|ref|ZP_06488842.1| preprotein translocase subunit SecF [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 322

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 151/282 (53%), Gaps = 5/282 (1%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    LIP+   I FM  R   + + ++ ++ S+ ++   G NY ++F GG  +    
Sbjct: 1   MKIFPLHLIPNDTKIDFMSWRKPVLILMLVLAVASVGIIVGKGFNYALEFTGGTLVQTSF 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR---VLEMVKKKI 642
            + VD+  VR  L      +   QN  G    ++RLQ    ++        V E V+K +
Sbjct: 61  QKTVDVDQVREKLSKAGFENAQVQNARGGNEVMIRLQPHGQNNNRDDAARTVAEDVRKAV 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
           T     +T+Q  E VGP++ ++L   G+   +   +  LIYI  RF+W FA+ A  T + 
Sbjct: 121 TSDENPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALF 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+ F +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   ++++
Sbjct: 181 DLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRAL--RVEPLEVLN 238

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           +SIN+TL R+V T++  F+S L + ++GG  +   A     G
Sbjct: 239 RSINQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIG 280


>gi|294827802|ref|NP_711324.2| preprotein translocase subunit SecF [Leptospira interrogans serovar
           Lai str. 56601]
 gi|293385647|gb|AAN48342.2| preprotein translocase subunit SecF [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 312

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 82/300 (27%), Positives = 144/300 (48%), Gaps = 20/300 (6%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHG--LNYGIDFKGGIQLGVLANRPVD------- 590
             F++ ++  + IS+   +      +         +DF GG++  V  ++ +D       
Sbjct: 2   FDFIKYKYVSICISLALIVFGFSYTYAVHGGFANSLDFNGGLRTVVEFDQNMDRKKLENY 61

Query: 591 -----LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                +  V   L+  +             + L++ + + G        L  +   I+ +
Sbjct: 62  FAENKIEAVLLLLDKEKHHYQIDIGLGSVDSILLKYREKNGLKPTDKVELSGIDALISIL 121

Query: 646 VPLSTIQ-----NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           +    I      +   VG  +  EL   G   + ++   +L YI  RF++ FALGAI  L
Sbjct: 122 IADFRIDKSNILSANQVGAIVGGELSSTGTTLLGLTMAIILAYISFRFQFKFALGAILAL 181

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             D+  T+ F   F I+ ++  +AA+LTL+GYS+ND +VV+DR+R+N        +F   
Sbjct: 182 THDLILTVAFIGFFQIKPSVPIIAALLTLLGYSINDTIVVFDRIRENSAGNLN-QTFGQT 240

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I+ +IN+TLGR+  TS A  IS++ + + G + +  FA  + FGIV+   SSIFIAAP++
Sbjct: 241 INSAINQTLGRTFNTSFATLISIVAIIIGGATELFDFAYVLTFGIVIGTYSSIFIAAPLV 300


>gi|21231805|ref|NP_637722.1| multidrug-efflux transporter acrB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768069|ref|YP_242831.1| multidrug-efflux transporter acrB [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21113517|gb|AAM41646.1| multidrug-efflux transporter acrB [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573401|gb|AAY48811.1| multidrug-efflux transporter acrB [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1056

 Score =  171 bits (433), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/536 (10%), Positives = 142/536 (26%), Gaps = 41/536 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PVFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKAVTQVIEQQLTGIDHLLYFNSSSASNGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D         +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSIDRDALNDIVGSRVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G         
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPQGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPQEFENIILRTDNNGATVRLKDVARVTVGPSNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E  G     L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSEAVGAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVVHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYVIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +     G   + FA+T+ +++  S F A+S   A+    ++       +    + 
Sbjct: 457 AMQPGASGAIYKQFALTIAMAMAFSAFLALSFTPALCAAFLKSTHSDKKNWIYRTF 512



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLLVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         + R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 949  VEQRAA---GKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANSRHSIGTGV 1005

Query: 802  AFGIVVAA-SSSIFIAAPILLFIYDW 826
              G+V A     IFI  P+   +   
Sbjct: 1006 IGGMVFATVLGVIFI--PLFFVVVRR 1029



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 54/146 (36%), Gaps = 5/146 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYVIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
           +    +  +    K++ +  G  V  ++      +P A+     G++   FA+ +A  + 
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPSAMQPGASGAIYKQFALTIAMAMA 479

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
            +A  ++     +          + +
Sbjct: 480 FSAFLALSFTPALCAAFLKSTHSDKK 505


>gi|225423376|gb|ACN91201.1| CmeB [Campylobacter coli]
          Length = 1040

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/682 (10%), Positives = 181/682 (26%), Gaps = 36/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLVNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSATLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAINDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QSPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T +        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFIPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---KMKSIDINPLSRFFL 533
             G  G   + FA+T+ +S+ IS F A+++  ++    +R       K +        + 
Sbjct: 462 ISGFVGEIQKQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                A      +     + I   +          +   +  +    L +        S 
Sbjct: 522 TSIFSAGVAYMLKRTIRFVLIFCIMLGAIFYLYKQVPGSLVPEEDQGLMIGIINLPSASR 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +  +          +G K+ +  + +    S  +     M            +   
Sbjct: 582 LHRTISEVDSMSQEILKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLEDWKDRNVSADE 641

Query: 654 TEIVGPKISRELIRKGIVGVII 675
             +   K          V + +
Sbjct: 642 IIMELNKKFAPDRNAASVFIGL 663



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 91/244 (37%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++   +++E   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALNTAKLVEAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + +       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFIPVSFISGFVGEIQKQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 83/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  + + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       D   ++ 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKKIFDAAIEAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   V TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIVMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 64/538 (11%), Positives = 145/538 (26%), Gaps = 39/538 (7%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M       +L   I    +         Q      P       I + ++L   S L   +
Sbjct: 532  MLKRTIRFVLIFCIMLGAIFY----LYKQVPGSLVPEEDQGLMIGI-INLPSASRLHRTI 586

Query: 61   DEDDFVNGFL--QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
             E D ++  +       +  + +    +   S+++    + +   D + +   AD++ + 
Sbjct: 587  SEVDSMSQEILKTNGVKDAMAMI-GFDLFTSSLKENAAAMFIGLEDWKDRNVSADEIIME 645

Query: 119  LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            L    +         + +            +  +      + +Q  E + + +      E
Sbjct: 646  LNKKFAPDRNAASVFIGLPPIPGLSITGGFEMYVQNKSGKSYDQIQEDVNKLVAAANQRE 705

Query: 179  STIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                   +      Q     D  +L+        +                         
Sbjct: 706  ELYGVRTTLDTSFPQYKLIIDRDKLKHFNLNMQDVFSTINATIG---------------- 749

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               Y V D   +         A  D +  +  +   F      +   +      +  +  
Sbjct: 750  --TYYVNDFTMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSFLTLQRSSGP 807

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             D +        Q         +    IE    +A         I  +    + V +   
Sbjct: 808  DDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSGSAYQEVSSKGT 867

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
            +        A   G+V + L +   Y      L    ++   V  +  L+ L G +  + 
Sbjct: 868  ASY------AFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLRGFSNDIY 921

Query: 416  SIAGIVLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIA 473
               G++L IGL+  + IL+ E   EE  K        +++    R    +  S       
Sbjct: 922  FQTGLLLLIGLSAKNAILIVEFAMEERFKKGKKIFDAAIEAAKLRFRPIVMTSLAFTFGV 981

Query: 474  TVVLFFFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
              ++F  G G+         +   ++ +   AI  V      +  + +        + 
Sbjct: 982  LPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEWLDKKRGKVH 1039


>gi|317014976|gb|ADU82412.1| preprotein translocase subunit SecD [Helicobacter pylori
           Gambia94/24]
          Length = 525

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 273/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNSRLIVFIFALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGREEISVQLPGIKTLEEERRAKDLISKSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D++    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDAEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG  LG DSI     A++ G +L++ FM + Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIVGPSLGKDSIKTSIIALIGGFILVMGFMALYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+ + V  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLREGEGVVKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIIGTQGIYQALLPKLAQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ +I   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALIGGFILVMGFMALYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRE---GEGVVKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+ + +  +G   I  FA+    GI+ +  ++I
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAI 495


>gi|120597957|ref|YP_962531.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. W3-18-1]
 gi|120558050|gb|ABM23977.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. W3-18-1]
          Length = 1063

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/523 (11%), Positives = 144/523 (27%), Gaps = 36/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              + ++L  ++   G +        Q  L  +P   P               +      
Sbjct: 10  RPIFAIVLSVLMLIAGAIS-----YFQLPLSEYPQVTPPT-----------VQVTASYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFL 119
                +   +    ++  + ++        M      + T+SF      +    +V   +
Sbjct: 54  ANPQVIADTVASPLEQAINGVEGMMYMQSQMSTDGKMVLTISFEQHINADIAQIQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +L  + ++  +VT       +++            +  S   +    D++     
Sbjct: 114 SRALPRLPPEVQRIGVVTEKTAPDILMVVNMLSPGDRYDPLYVSNYAMLNVRDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               L        +    DP ++     T + +       N        G +    S   
Sbjct: 174 IANVLLGGEGEYAMRVWLDPEKVASRGMTASDVVAAIREQNVQVAAGSIGQQPNA-SSAF 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V     ++                +    +       +         +         
Sbjct: 233 QVTVNALGRLTTEE-------------QFGDIVIKAGTHGQVTRLRDVARVELGAENYTM 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +              L+A         +          S 
Sbjct: 280 RAQLDGGNTVGIQILMTPGSNALDVSSAVRATMDRLQASFPEGIEYKIAYDPTVFVRASL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV+IV+ + +   +  ++   ++ ++++ T A++ + G +L   S+ G
Sbjct: 340 QSVAVTLLEAILLVVIVVVLFLQSWRASIIPLIAVPVSLVGTFAVMHMFGFSLNTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV--- 476
           +VL IG+ VD  I+V E +       +S   +           I           +    
Sbjct: 400 LVLSIGIVVDDAIVVVENVERHMALGESPKDAALKAMDEVTGPILAITSVLAAVFIPSAF 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           L    G   R FA+T+  S ++S   ++++  A+   +++   
Sbjct: 460 LSGLQGEFYRQFALTIAFSTILSAINSLTLSPALAAILLKPHH 502



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/145 (11%), Positives = 51/145 (35%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +    + +   +    L G + N+      + L+G +  + +++ +  R   
Sbjct: 903  SWSLPFAVLLIAPMALLSAIAGVWLTGGDNNIFTQIGFVVLVGLAAKNAILIVEFAR--- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
               +  +     + ++    L   + TS+A    V+P+ +    G  +  +  I +  G+
Sbjct: 960  AKESEGVDPLAAVLEAARLRLRPILMTSLAFIAGVIPLVLASGAGAEMRHAMGIAVFAGM 1019

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +   +  + +     + +     + 
Sbjct: 1020 LGVTAFGLVLTPVFYVVVRKLALRR 1044



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 83/238 (34%), Gaps = 8/238 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L +      +  +        + +          + V   + +           
Sbjct: 266 DVARVELGAENYTMRAQLDGGNTVGIQILMTPGSNALDVSSAVRATMDRLQASFPEGIEY 325

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +        +   L    +  +    + +++ +     W  ++  +  + + +  T    
Sbjct: 326 KIAYDPTVFVRASLQSVAVTLLEAILLVVIVVVLFLQSWRASIIPLIAVPVSLVGTFAVM 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLG 770
            +FG  F+L  ++    +   S+   V     + +N++ +     S +D   K+++E  G
Sbjct: 386 HMFG--FSLNTLSLFGLV--LSIGIVVDDAIVVVENVERHMALGESPKDAALKAMDEVTG 441

Query: 771 RSV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +  TS   A FI    ++   G     FA+ +AF  +++A +S+ ++  +   +  
Sbjct: 442 PILAITSVLAAVFIPSAFLSGLQGEFYRQFALTIAFSTILSAINSLTLSPALAAILLK 499


>gi|313633149|gb|EFS00036.1| protein-export membrane protein SecF [Listeria seeligeri FSL
           N1-067]
          Length = 266

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 58/253 (22%), Positives = 120/253 (47%), Gaps = 9/253 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            + A++ +  + ++ +L  + +          +    V             +     +  
Sbjct: 1   EISADKTLTETQIKKDLNDIGMPSDDIVFQGADSKTAVVSYKGTLSQDDVAKFKSYFE-- 58

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                      +   V P + +EL + G + + +++I +++YI +RF++Y  + AI +L+
Sbjct: 59  ----DKYKHEPSISTVSPTVGKELAKNGFLALGVASILIVLYIAVRFEFYMGIAAILSLL 114

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK---NMKLYTTSISFR 758
            D      FF++  +E +LT +AAVLT+IGYS+ND +V  DR+R     M+ + T     
Sbjct: 115 FDAFVIFIFFSVTRLEVDLTFIAAVLTVIGYSINDTIVTADRVRDISMKMQRFKTQEEIA 174

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++K++ +T  RS+ T +    +VL + ++G   I +F+I +  G+V +  SSIF+A  
Sbjct: 175 GAVNKALRQTFTRSINTILTVIFTVLALVLFGSESILNFSIALLVGLVSSVFSSIFMAMQ 234

Query: 819 ILLFIYDWRAKNA 831
           +       + +  
Sbjct: 235 LWYVFKARQLRKK 247


>gi|42522562|ref|NP_967942.1| acriflavin resistance protein [Bdellovibrio bacteriovorus HD100]
 gi|39575094|emb|CAE78935.1| acriflavin resistance protein [Bdellovibrio bacteriovorus HD100]
          Length = 1050

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/585 (10%), Positives = 147/585 (25%), Gaps = 34/585 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  +  +L   +   GL+        +  + + P                   + L+  
Sbjct: 9   KNPVFAWMLMFGLMIFGLIS-----FSRMGVSQMPDVDFPTVT---------VSVSLDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     ++       S +     IT+ F   R  +     V   + G
Sbjct: 55  APEVMETQVVDPIESSLMTVEGIESIKSSSKTGSASITVEFDLDRNIDLAVQDVQAKISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D     +  T   +  I+     +                   D+    E   
Sbjct: 115 IQRMLPDDVDPPSISKTNPDDQPILW--LALTYDKEDPEFLMRYARDYLKDRFTTVEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P  L +   +   +       ++   G          +     
Sbjct: 173 DIFLGGYTDPVMRVHVRPKDLLRYNISVNDVVDAIRNEHSELPGGYIQTDKKTFNVRTMG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + + E   I ++                                 +    L  +    
Sbjct: 233 EAKTEEEFRNIVISRRAG-------------VTVADPTNMVKIRQVADASMGLDKIERMS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +             +++    P     V   +      S   
Sbjct: 280 RFNGKTALGLGIRKQRGTNAVSVARAVKEQITVIQKTLPPGMNLQVNFDSTKFIEQSVGE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +      +V +M +           SI  +++     L  LG TL   ++ G+ 
Sbjct: 340 LNKHLVLAVIFTSLVCWMFLGSWSATFNVLLSIPTSLLGAFIGLYFLGYTLNTFTLLGLT 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E I   N   +     ++      +++ +  +     I   V F  
Sbjct: 400 LAIGIVVDDAIMVLENIFRYNENGRGRIESAILGAREISFAAMAATAAVIAIFLPVAFMK 459

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIPD 536
           G  G     F +T+ +++ +S+  +++I        + + + K+                
Sbjct: 460 GIIGKFFMQFGVTISIAVFLSLVESLTITPMRCAGFVHHGERKTKLGKGFEALMENTRIG 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                 +  +     +       ++  +    LN  +       +
Sbjct: 520 YDRWLRVSLQHPWKVLIGSLVFVAVSFISIKFLNKEMSPAQDQSI 564



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 80/226 (35%), Gaps = 6/226 (2%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            Q+                      +      +   + +        +    K  +E  + 
Sbjct: 807  QSISRSNRQRAITVTANMKPGVSQQAAMAYIEDAAKKMLEPGYMIDQGGSSKTFKESFQS 866

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             I  +++  +   + +  +F  +   +  +  L    +       + G   N+ ++  +L
Sbjct: 867  LIFALVMGLVIAYMVLASQFNSFIDPVTILMALPFSFSGAFFALLITGQSLNMFSMIGLL 926

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ +    N      + +  D + ++    L   + TS+A   + +P A
Sbjct: 927  LLMGIVKKNSILLIE--FTNTVRDRGTSAALDALIEACPTRLRPILMTSVATVAAAIPSA 984

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                 G   +   AI +  G+VV+ + ++F+   + L +  ++ ++
Sbjct: 985  TARGAGSETMRPMAICLIGGVVVSTALTLFVVPAVYLLMDKFKKRD 1030



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 49/149 (32%), Gaps = 7/149 (4%)

Query: 673 VIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++++ I   +  W     W      + ++   +          G   N   +  +   IG
Sbjct: 344 LVLAVIFTSLVCWMFLGSWSATFNVLLSIPTSLLGAFIGLYFLGYTLNTFTLLGLTLAIG 403

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D ++V + +    +         +       E    ++  + A     LP+A   G
Sbjct: 404 IVVDDAIMVLENI---FRYNENGRGRIESAILGAREISFAAMAATAAVIAIFLPVAFMKG 460

Query: 792 SVIG---SFAIPMAFGIVVAASSSIFIAA 817
            +      F + ++  + ++   S+ I  
Sbjct: 461 IIGKFFMQFGVTISIAVFLSLVESLTITP 489


>gi|332308130|ref|YP_004435981.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175459|gb|AEE24713.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1053

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 83/688 (12%), Positives = 189/688 (27%), Gaps = 49/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+   +        + ++P+  P               + +    
Sbjct: 9   RPVFAWVISIIIMLTGIASIM-----TLPVAQYPTVAPPV-------------ISVSTSY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      L   L            S       + ++F +    +    +V  
Sbjct: 51  TGADAETVENSVTQILEQQLTGLDGLLYFSSSSTSDGSASVNITFEEGTDPDYAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q VNS+L    +   +  T      ++++        + A + S  I     D +   
Sbjct: 111 KVQQVNSRLPESVQSQGVTVTKSNTDFLLVTAVYDSTDKASAFDISDYISSNMEDSLARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L       + +S      N        G     D+ 
Sbjct: 171 EGVGDTRVFGSQ-YAMRIWLDPTKLAAYELMPSDISTALAAQNIQVPAGKIGAVPALDNQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +             +       
Sbjct: 230 ELNATVTAQSML-------------ETPDQFREIILKSDATGANVRLGDVARVEIGSESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +   T        A L               +      
Sbjct: 277 DAIPRLNGHPASGIAVMLSPGANALDTATRVKDKVAELAVNLPEGYEVTFPRDSTDFIKI 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV++V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 337 SISEVVQTLGEAVVLVVLVMWLFLQNWRATLIPAIAVPVVLLGTFGVLAAFGFSINTLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            GIVL IGL VD  I+V E +    R+   S   +     S     +    +      + 
Sbjct: 397 FGIVLSIGLLVDDAIVVVENVERLMREKNLSPRDATIESMSEITGALIGIAVVLSAVFLP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDI 525
           + FFGG      + F+I +  S+++S+  A+++   +                     + 
Sbjct: 457 MAFFGGSTGVIYKQFSIAIVSSMILSVIVALTLSPTLCASFLTNKEHSSEGKGFFARFNR 516

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
              +        +     R   W +G  I+  I S+ ++         + +G I   V  
Sbjct: 517 GFNNLTASYTSHVGRLITRKVRWVLGYGIIIGILSVLVMRMPTGFLPQEDQGSIMFQVNL 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                +   R   E ++   ++ ++ D  + F +      G           +       
Sbjct: 577 PEGASIKRTREVSEQVEDYLLNQESQDILRVFSISGFNFSGSGQNAGMGFVSLTPWDDRT 636

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +         K    +    I  +
Sbjct: 637 EDEQSADALIGRMNKNLSTVRDARIFAL 664



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 92/236 (38%), Gaps = 6/236 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +  D   +      + +  +     +++     ++    ++   +P
Sbjct: 260 NVRLGDVARVEIGSESYDAIPRLNGHPASGIAVMLSPGANALDTATRVKDKVAELAVNLP 319

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          +  I + +  +  + + +++ +W+  + W   L     + + +  
Sbjct: 320 EGYEVTFPRDSTDFIKISISEVVQTLGEAVVLVVLVMWLFLQNWRATLIPAIAVPVVLLG 379

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G  A FG   N   +  ++  IG  V+D +VV + +     +   ++S RD   +S++
Sbjct: 380 TFGVLAAFGFSINTLTMFGIVLSIGLLVDDAIVVVENV--ERLMREKNLSPRDATIESMS 437

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           E  G  +  ++      LPMA +GGS       F+I +   ++++   ++ ++  +
Sbjct: 438 EITGALIGIAVVLSAVFLPMAFFGGSTGVIYKQFSIAIVSSMILSVIVALTLSPTL 493



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 75/223 (33%), Gaps = 8/223 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-I 674
            N +   Q Q   S   +    M + +                G     +L       +  
Sbjct: 821  NGIASYQIQGSASSGVSSGQAMAEMERLTAEVGQGKLTYAWSGLSYQEKLSSGQSTALYA 880

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            IS + + + +   ++ W      I  + L +        L G+E ++    A+LT IG +
Sbjct: 881  ISILVVFLALAALYESWSVPFSVILVIPLGVVGAALASTLRGLENDIYFQVALLTTIGLA 940

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ +   +    Y   +S      ++    L   + TS+A    +LP+A+    G
Sbjct: 941  SKNAILIVE-FAE--ASYQKGMSLVGAAVEAAKLRLRPIIMTSLAFSFGILPLAISSGAG 997

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             +   S    +  G + A    IF      + I     K   +
Sbjct: 998  ANSRISIGTGILGGTITATILGIFFVPLFFVIIRGIFPKRRPV 1040


>gi|289667947|ref|ZP_06489022.1| RND superfamily protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 1056

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/613 (10%), Positives = 155/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PVFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKAVTQVIEQQLTGIDHLLYFNSSSAANGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D         +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSIDRDALNDIVGSRVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G     +   
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPEGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +                    +    I   +             +    +   
Sbjct: 230 FTATVSAEGR-------------FRSPEQFENIILRTDNNGATVRLKDVARVTVGPSNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E  G     L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSEAVGAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVIHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A+S   A+            +    ++ D   
Sbjct: 457 SLQPGASGAIYKQFALTIAMSMGFSAFLALSFTPALCGAFLKSTHSTKKNWVYRTFDKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R+  W +    L  +C        G     + +G     V    
Sbjct: 517 EKLAHRYVGVVGHTLKRSPPWMIAFVALVVLCGFLFTRMPGSFLPEEDQGFAVAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
                        
Sbjct: 577 GATKIRTNEAFAQ 589



 Score = 56.2 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 57/145 (39%), Gaps = 7/145 (4%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLMVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         + R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 949  VEQRAA---GKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANSRHSIGTGV 1005

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW 826
              G+V A    + I  P+   +   
Sbjct: 1006 IGGMVFATVLGL-IFIPLFFVVVRR 1029



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 477

Query: 805 IVVAASSSIFIAAPI 819
           +  +A  ++     +
Sbjct: 478 MGFSAFLALSFTPAL 492



 Score = 43.5 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 48/527 (9%), Positives = 135/527 (25%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+ PW++   +++   G L        +      P              +G +  ++++ 
Sbjct: 533  RSPPWMIAFVALVVLCGFL------FTRMPGSFLPEED-----------QGFAVAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT----------LSFADSRFKENI 111
                          ++R+ L+K+      ++                 +       ++  
Sbjct: 575  PPGATKIRTNEAFAQMRAVLEKQPAVEGMLQIAGFSFLGSGENVGMGFIRLKPWEERDVT 634

Query: 112  ADKVTLFLQGVNSKLNVD----PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A+++   L G    +            +    +     +  Q+         I     ++
Sbjct: 635  AEQLIQQLNGAFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALINARNIVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +  ++             +   +QL  ++  ++   L  +    S   +L       + 
Sbjct: 695  GKAAEKQDTLVGVRPNGLENSPQLQLHVDRVQAQSMGLNVSDIYSSIQLMLAPVYVNDYF 754

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
               R              +V +                  P    +  +           
Sbjct: 755  AEGRI------------KRVNMRADDQFRVGPESLRNFFSPSATATGADGQPAMIPLSNV 802

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
              +    A     R      +N          SG        I+   L  G       + 
Sbjct: 803  VKVEWNYASPALNRYNGYSAVNIVGNPAPGGSSGQAMSAMEDIVNNDLPPGFGFDWSGMS 862

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
             +  +  +  +  +      +   L  +            +     + + V+  +    L
Sbjct: 863  YQEIIAGNAATLLLALSVVVVFLCLAAL-----YESWSIPVAVLMVVPIGVLGAITFSML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G    L    G++  IGLA  + IL+ E   E+    +++  +        +  I  ++
Sbjct: 918  RGLPNDLYFKIGMITVIGLAAKNAILIVEFAVEQRAAGKTLREATLEAAHLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               ++  + L      G  +       +   ++ +    +  +    
Sbjct: 978  FAFILGVLPLAISTGAGANSRHSIGTGVIGGMVFATVLGLIFIPLFF 1024


>gi|86151486|ref|ZP_01069701.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni 260.94]
 gi|85841833|gb|EAQ59080.1| RND efflux system, inner membrane transporter CmeB [Campylobacter
           jejuni subsp. jejuni 260.94]
          Length = 1040

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 75/682 (10%), Positives = 181/682 (26%), Gaps = 36/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLTNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVSGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        + + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFVPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---KMKSIDINPLSRFFL 533
             G  G   R FA+T+ +S+ IS F A+++  ++    +R       K +        + 
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPFKFVKKFNDFFDWS 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                A      +     + I   +          +   +  +    L +        S 
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPSSLVPEEDQGLMIGIINLPSASA 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +  +          +G K+ +  + +    S  +     M            +   
Sbjct: 582 LHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLKDWKDRNVSADE 641

Query: 654 TEIVGPKISRELIRKGIVGVII 675
             +   K          + + +
Sbjct: 642 IAMELNKKFAFDRNASSIFIGL 663



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  K   E I++ +   + + I ++I +++  K +   L  +  + + +  T    
Sbjct: 326 KIPYDTTKFVIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 82/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  I + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       +    + 
Sbjct: 906  GSFLLVYLRGFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKGVFEAAVAAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIIMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  +I
Sbjct: 1024 LENFNEWLDKKRGKI 1038


>gi|221212960|ref|ZP_03585936.1| acriflavine resistance protein B [Burkholderia multivorans CGD1]
 gi|221167173|gb|EED99643.1| acriflavine resistance protein B [Burkholderia multivorans CGD1]
          Length = 1045

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 70/615 (11%), Positives = 169/615 (27%), Gaps = 41/615 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G             + ++P   P              +       
Sbjct: 8   RPVFAWVIALFIMLGGAFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSATSSAGMASLYLTFRQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      +   ++     D      ++         +  +   +   +
Sbjct: 114 EARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTGVQLGEYASANVVQALRRVDGVGR 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKLAGHGLTASDIAAAVRAHNARVTVGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +      +      I    +       
Sbjct: 233 VFADAPL-------------KTPADFGAIALRSQADGAALYLRDVARIEFGGSDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L A   P     +          S +  
Sbjct: 280 VNGKVAVGMGIKLAPGSNAVATEKRIRAAMDELSAYFPPGVKYQIPYETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+    + + +  T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGAMYAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  + + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEERLAPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+++ +SI  S F A+S+  A+   +          +       +     
Sbjct: 460 GAVGNIYRQFALSLAVSIAFSAFLALSLTPALCATLLKPVDDGHHDKRGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   W V   +L ++ ++ L          + +G   + V+  +  
Sbjct: 520 STQRYATRVGAMLNKPLRWLVVYGVLTAVAALMLTRLPSAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIG 604
            L+    ++  ++  
Sbjct: 580 PLAETMQSVREVESY 594



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 72/203 (35%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    ++ +       V       T         +++   I   ++  + M +++ 
Sbjct: 300 ATEKRIRAAMDELSAYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NLRATLIPTLVVPVALAGTFGAMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    ++  D   K++ +  G  V  ++      +PMA +GG+V      FA+ +A
Sbjct: 416 -ERLMVEERLAPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIAFSAFLALSLTPALCATLLK 497



 Score = 41.2 bits (94), Expect = 0.65,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 72/210 (34%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           I  I              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAPGHSSGEAMAAIERIAATLPAGIGHAWSGQSFEERLSGAQAPLLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W   L  +  + L +   +    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPLAVMLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ +  +  +      +S  +   ++    L   V TS+A  + VLP+A   G+  G+  
Sbjct: 938  LIVEVAKDLLAQ---RMSLAEAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQT 994

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +  G++ A   ++F+     + +  
Sbjct: 995  AIGTGVLGGVIAATVLAVFLVPLFFVVVGR 1024


>gi|294664254|ref|ZP_06729627.1| multidrug efflux transporter [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605980|gb|EFF49258.1| multidrug efflux transporter [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1056

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 65/613 (10%), Positives = 156/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PVFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKAVTQVIEQQLTGIDHLLYFNSSSAANGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    +         +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSENPSIDRDALNDIVGSRVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G     +   
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPEGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPEQFENIILRTDNNGATVRLKDVARVTVGPSNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E  G     L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSEAVGAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVIHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A+S   A+            +    ++ D   
Sbjct: 457 SLQPGASGAIYKQFALTIAMSMGFSAFLALSFTPALCGAFLKSTHSTKKNWVYRTFDKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R+  W +    L  +C        G     + +G     V    
Sbjct: 517 DKLAHRYVGVVGHTLKRSPPWMIAFVALLVLCGFLFTRMPGSFLPEEDQGFAVAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
                        
Sbjct: 577 GATKIRTNEAFAQ 589



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLLVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         + R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 949  VEQRAA---GKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANSRHSIGTGV 1005

Query: 802  AFGIVVAA-SSSIFIAAPILLFIYDW 826
              G+V A     IFI  P+   +   
Sbjct: 1006 IGGMVFATVLGVIFI--PLFFVVVRR 1029



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 477

Query: 805 IVVAASSSIFIAAPI 819
           +  +A  ++     +
Sbjct: 478 MGFSAFLALSFTPAL 492



 Score = 39.7 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 45/527 (8%), Positives = 137/527 (25%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+ PW++   +++   G L        +      P              +G +  ++++ 
Sbjct: 533  RSPPWMIAFVALLVLCGFL------FTRMPGSFLPEED-----------QGFAVAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT----------LSFADSRFKENI 111
                          ++R+ L+K+      ++                 +       ++  
Sbjct: 575  PPGATKIRTNEAFAQMRAVLQKQPAVEGMLQIAGFSFLGSGENVGMGFIRLKPWEERDVT 634

Query: 112  ADKVTLFLQGVNSKLNVD----PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A+++   L G    +            +    +     +  Q+         I     ++
Sbjct: 635  AEQLIQQLNGAFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALINARNIVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +   +             +   +QL    D  + + +    + +               
Sbjct: 695  GKAAQKQDALVGVRPNGLENSPQLQLH--VDRVQAQSMGLDVSDIYSSIQ---------- 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                 L     N Y  E +++   +  +                 +       +   +  
Sbjct: 743  ---LMLAPVYVNDYFAEGRIKRVNMRADDQFRAGPESLRNFFTPSATATGIDGQPAMIPL 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
             N+ K         +      +     G     G+     + +   +          +  
Sbjct: 800  SNVVKAEWNYASPALNRYNGYSAVNIVGNPAPGGSSGQAMSAMEDIVNNDLPPGFGFDWS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                     G+ +      ++V   + +            ++    I +   +T ++L  
Sbjct: 860  GMSYQEIIAGNAATLLLALSVVVVFLCLAALYESWSIPVAVLLVVPIGVLGAITFSMLRG 919

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            L     L    G++  IGLA  + IL+ E   E+    +++  +        +  I  ++
Sbjct: 920  LPN--DLYFKIGMITVIGLAAKNAILIVEFAVEQRAAGKTLREATLEAAHLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               ++  + L      G  +       +   ++ +    +  +    
Sbjct: 978  FAFILGVLPLAISTGAGANSRHSIGTGVIGGMVFATVLGVIFIPLFF 1024


>gi|291008203|ref|ZP_06566176.1| preprotein translocase subunit SecF [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 407

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 139/314 (44%), Gaps = 15/314 (4%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA---NR 587
             L     A   +  R        L  +  +  +   G N GIDF+GG ++ + A   N 
Sbjct: 20  HRLYTGTGAFDIVGKRMRWYVSLGLLVLVCVAAMALKGFNLGIDFEGGTKIQMPAAGANG 79

Query: 588 PVDLSVVRSNL-ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           P+    V ++  E++     + Q      N  ++++ +         V   +   +  + 
Sbjct: 80  PISTEQVETSFREAVGRPAETVQLVGTGGNQSIQIRTESLSVDEVGEVKRTLFNDLQPVD 139

Query: 647 ----PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
               P     +   V      E+ ++ ++ + +  + + I++   F+ + A+ A+  L+ 
Sbjct: 140 GQGRPSQQAISDSAVSGTWGGEITKQAVIALAVFIVLVTIFLTFYFERWMAVAALIALVH 199

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDL 760
           D+  T G +A+ G E     V  +LT++G+S+ D VVV+D++++N +  L  T  ++ + 
Sbjct: 200 DVVVTAGIYAIIGFEVTPATVIGLLTILGFSLYDTVVVFDKVKENTRGLLGLTRRTYGEA 259

Query: 761 IDKSINETLGRSVYTSMAA-----FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            + ++N+TL RS+ TS+ A      + V+   V G  V+   A+    G++    SSI +
Sbjct: 260 ANLAVNQTLMRSINTSIIALLPVLGLLVVGAGVLGVGVLRDLALVQMVGMIAGVVSSILL 319

Query: 816 AAPILLFIYDWRAK 829
           A P+L+       K
Sbjct: 320 ATPVLVDFKMRDPK 333


>gi|289523404|ref|ZP_06440258.1| protein-export membrane protein SecD [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503096|gb|EFD24260.1| protein-export membrane protein SecD [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 478

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 150/494 (30%), Positives = 243/494 (49%), Gaps = 57/494 (11%)

Query: 40  PKNRISLGLDLRGGSHLVLEVDE---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQ 95
           P  +I LGLDL+GG H++L+      +      ++     +R+ + + G+    +++   
Sbjct: 37  PDEKIKLGLDLKGGVHILLQAKGTPDNPITGDSIERLIAVMRNRIDQYGVAEPVIQREGG 96

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           +++ +        E   + +          +                             
Sbjct: 97  DRVVVELPGLDDPEAAIELIGKTAMLEFRPV----------------------------- 127

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
               ++ +  I R+   Q   ++   Q         +        +LR    +       
Sbjct: 128 ----VDVTPAIPREPERQNYDTDEEYQSALKRWQEYRDQSLSLEEKLRVRSQS------- 176

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
              P+ +      G          +  +    E++G HL  A   F     +PVV + F+
Sbjct: 177 --DPSFTVARGEDG----------RIYLLGPAEVTGKHLTDARVAF-DNLGRPVVTLKFN 223

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
           + G   F E++ +NIGK +A++LDG V++APV+ + I +G+AQISG FT + A  LA ML
Sbjct: 224 KEGTNLFDELSSENIGKQVAILLDGVVISAPVVQERISAGEAQISGRFTTDEAQRLAIML 283

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           RAG+LP+ + I+E R++G  LG+DSI  G  A + G  LI +FMI+ Y   GLVAD S+ 
Sbjct: 284 RAGALPVTVEILETRSIGPTLGADSIRSGVRAGLIGAALIFIFMIIYYSAIGLVADISLV 343

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           + ++L LA L+   ATLTLP IAGI+L IG+AVD NIL+ ERI+EE R  ++V  S+D G
Sbjct: 344 MTILLLLAGLASFKATLTLPGIAGIILTIGMAVDGNILIYERIKEELRSGKTVMASVDAG 403

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           F +A+ TI D+N+T L A V LF++G G +RGFA+T+ + IL S+F A+ + R ++   I
Sbjct: 404 FRKAFITIIDANLTTLFAAVFLFYYGTGPIRGFAVTLSIGILASVFCAVFVTRVLLRIFI 463

Query: 516 RYKKMKSIDINPLS 529
             +K          
Sbjct: 464 SKRKKLLFPAFKER 477



 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 80/174 (45%), Gaps = 4/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + IR G+   +I A  + I++ I +     L A  +L++ I   L   A F 
Sbjct: 299 SIGPTLGADSIRSGVRAGLIGAALIFIFMIIYYS-AIGLVADISLVMTILLLLAGLASFK 357

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  +++Y+R+++ ++   +  +    +D    +     +  
Sbjct: 358 ATLTLPGIAGIILTIGMAVDGNILIYERIKEELR---SGKTVMASVDAGFRKAFITIIDA 414

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++    + + +  +G   I  FA+ ++ GI+ +   ++F+   +L      R K
Sbjct: 415 NLTTLFAAVFLFYYGTGPIRGFAVTLSIGILASVFCAVFVTRVLLRIFISKRKK 468


>gi|188991200|ref|YP_001903210.1| RND superfamily protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167732960|emb|CAP51156.1| RND superfamily protein [Xanthomonas campestris pv. campestris]
          Length = 1056

 Score =  171 bits (432), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 57/536 (10%), Positives = 142/536 (26%), Gaps = 41/536 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PVFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKAVTQVIEQQLTGIDHLLYFNSSSASNGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D         +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSIDRDALNDIVGSRVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G         
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPQGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPQEFENIILRTDNNGATVRLKDVARVTVGPSNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E  G     L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSEAVGAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVVHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYVIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +     G   + FA+T+ +++  S F A+S   A+    ++       +    + 
Sbjct: 457 AMQPGASGAIYKQFALTIAMAMAFSAFLALSFTPALCAAFLKSTHSDKKNWIYRTF 512



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLLVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         + R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 949  VEQRAA---GKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANSRHSIGTGV 1005

Query: 802  AFGIVVAA-SSSIFIAAPILLFIYDW 826
              G+V A     IFI  P+   +   
Sbjct: 1006 IGGMVFATVLGVIFI--PLFFVVVRR 1029



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 54/146 (36%), Gaps = 5/146 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYVIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
           +    +  +    K++ +  G  V  ++      +P A+     G++   FA+ +A  + 
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPSAMQPGASGAIYKQFALTIAMAMA 479

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
            +A  ++     +          + +
Sbjct: 480 FSAFLALSFTPALCAAFLKSTHSDKK 505


>gi|281356523|ref|ZP_06243015.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Victivallis vadensis ATCC BAA-548]
 gi|281317215|gb|EFB01237.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Victivallis vadensis ATCC BAA-548]
          Length = 1038

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 73/630 (11%), Positives = 168/630 (26%), Gaps = 46/630 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +    G+L      L Q  +  +P   P               + +    
Sbjct: 9   RPKLSIVISVVTVLAGVL-----CLTQVPIAEYPEIAPPT-------------INVSASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       + + +   E +  FS     +    +T++F      +     V  
Sbjct: 51  PGASAQVIAETVGAIIEAEVNGVEDMIYFSSTSDNSGNYSLTITFESGTNDDMAQVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q     L  + K   +         + +     D      +E S  I     D +   
Sbjct: 111 AVQRAEPSLPEEVKALGVTVRKRSSDILAMYSFMTDGTSLSQLELSNYIRLNVRDALARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP R+  L  +  ++       N        G     D  
Sbjct: 171 NGISEASIMGERAYSMRIWLDPLRMSSLNISPEEIISAIQTQNIQAAAGTVGAESSNDYI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +     ++                   +    I       +         I       
Sbjct: 231 QLKVNTLGRL---------------QSVDEFGDIIIKVGKKGQLTRLRDVARIELGAETY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +    I  A      L           +          
Sbjct: 276 AANSTYNGKENVALAIYRNSDANALSVINAANAKLEELSQYFPDGVSYTIGYDPTEYIRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T  +   LV+ + ++ +   +  L+   +I ++++ T   L  LG T+   ++
Sbjct: 336 TMEEIVETLIVTLLLVVGITYLFLQDWRATLIPSITIPVSLMGTFVFLIPLGFTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG  VD  I+V E       +       +++    +    +  + +  +     
Sbjct: 396 FALILVIGSLVDDAIVVVENCMRIIEEEHLPPKQAVEKSMQQITGAVIATTLVIVAIYAP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLS 529
           + F+GG        F+ TM +S++IS   A+++  A+   +       +    I  N + 
Sbjct: 456 IGFYGGMVGTIYLQFSATMCISLVISTVNALTLSPALCRLLLRPHQETRNPLFIGFNKVL 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F         +    R     +       +    +    +  +  +    L V    P 
Sbjct: 516 NFTRNGYVSVSKLFVRRAILTILIFCGVFAATYWRYNKTQSEFLPAEDKGALMVDVQLPP 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
             ++ R++L   Q  D        +   +V
Sbjct: 576 GATLHRTDLAMKQFYDKVKNLPGVKDMIIV 605



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 92/255 (36%), Gaps = 15/255 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +   +   L+ +R         +    N        V L            V+     
Sbjct: 249 IIIKVGKKGQLTRLRDVARIELGAETYAANSTYNGKENVALAIYRNSDANALSVINAANA 308

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG--IVGVIISAIAMLIYIWIRF--KWYFALGA 696
           K+ E+        +  +G   +  +      IV  +I  + +++ I   F   W   L  
Sbjct: 309 KLEELSQYFPDGVSYTIGYDPTEYIRITMEEIVETLIVTLLLVVGITYLFLQDWRATLIP 368

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTT 753
             T+ + +  T  F    G   N   + A++ +IG  V+D +VV +   R+ +   L   
Sbjct: 369 SITIPVSLMGTFVFLIPLGFTINTLTMFALILVIGSLVDDAIVVVENCMRIIEEEHL--- 425

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVIG-SFAIPMAFGIVVAAS 810
               +  ++KS+ +  G  + T++       P+  +GG    I   F+  M   +V++  
Sbjct: 426 --PPKQAVEKSMQQITGAVIATTLVIVAIYAPIGFYGGMVGTIYLQFSATMCISLVISTV 483

Query: 811 SSIFIAAPILLFIYD 825
           +++ ++  +   +  
Sbjct: 484 NALTLSPALCRLLLR 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 93/246 (37%), Gaps = 16/246 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++  +       Q     ++    +  Q    V+   +++ +++ + E +P     +  
Sbjct: 798  SSIAKVSYMVGPRQIQRFNQSMSASVNAQSIPGVSSGALMKEIEQLVKEKLPKEYRISWT 857

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK-TLGFF 711
             +  +       +G +  +++   +  Y+++      W   +  + +++  +    LG +
Sbjct: 858  DMSYQERGN---EGKIVGLMALALVFGYLFLVAQYESWSIPMPVMVSVMFALLGGLLGVW 914

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            A  GI  ++ A   ++ L+G S  + +++ +  ++  +      S  D     + +    
Sbjct: 915  AW-GISLSIYAQLGLIMLVGLSSKNAILMVEFSKQEREA---GKSIFDAAQDGLRQRYRA 970

Query: 772  SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + T+ +  I V PM +    G     +  I    G+++A    I     +      +R 
Sbjct: 971  VLMTAWSFIIGVYPMVIATGAGAGSRRAIGITTFSGMLLATIIGITFIPALYALFQRFRE 1030

Query: 829  --KNAR 832
              K+ +
Sbjct: 1031 WVKHGK 1036


>gi|317402011|gb|EFV82610.1| hydrophobe/amphiphile efflux-1 family transporter [Achromobacter
           xylosoxidans C54]
          Length = 1045

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 69/553 (12%), Positives = 156/553 (28%), Gaps = 42/553 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +GLL           + ++P   P   +++G               
Sbjct: 8   RPVFAWVISLLIALVGLLSI-----RALPVAQYPDIAPP-VVNIG------------ASY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQ---NKITLSFADSRFKENIADKVTL 117
                  ++      +   +    G+   S          I L+F      +  A +V  
Sbjct: 50  PGASAKVVEEAVTAIIEREMNGAPGLMYTSSSSDSTGWASINLTFKQGTNPDIAAVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L    +++ +      +   ++     D  +   ++         +  +   
Sbjct: 110 RLKAVEPRLPESVRRDGVRVEKAADNIQLVVSLKSDGSLDD-MQLGELAASNVLQALRRV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP++L  L  T   +       N        G + +    
Sbjct: 169 EGVGKVQSFGA-EAAMRIWPDPAKLTALSLTPGDIVSALRSHNARVTIGELGNQAVPQDA 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +                 +        +             +       
Sbjct: 228 PLNASIVAGESL-------------HTPEQFANIPLRAQPDGATLRLKDVARVELGGTDY 274

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    +                +   T          L     P     +          
Sbjct: 275 MYLSRVNGMTGTGLGIKLAPGSNAVETTRRIRETMHELAQYFPPGVSWDIPYETSTFVEI 334

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+++ +   +  L+    + + ++ TL ++  LG ++ + ++
Sbjct: 335 SIQKVLMTLLEAVALVFCVMYLFMQNLRATLIPTLVVPVALLGTLGVMLGLGYSINVLTM 394

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   V 
Sbjct: 395 FGMVLAIGILVDDAIVVVENVERIMAEEGLSPHDATVKAMGQISGAIVGITVVLVSVFVP 454

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF    G   R FA+T+ +SI  S F A+S+  A+   +++       +      +F 
Sbjct: 455 MAFFDGAVGNIYRQFAVTLAVSIAFSAFLALSLTPALCASLLKPIPAGHHEKRGFFGWFN 514

Query: 534 IPDCIAIQFMRAR 546
                      AR
Sbjct: 515 RAFARLTTRYTAR 527



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 85/232 (36%), Gaps = 7/232 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L       +S  N        ++L           R+ E + +      P  + 
Sbjct: 263 DVARVELGGTDYMYLSRVNGMTGTGLGIKLAPGSNAVETTRRIRETMHELAQYFPPGVSW 322

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
                    +   + +K ++ ++ +   +   +++  +     L     + + +  TLG 
Sbjct: 323 DIPYETSTFVEISI-QKVLMTLLEAVALVFCVMYLFMQNLRATLIPTLVVPVALLGTLGV 381

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   N+  +  ++  IG  V+D +VV + +     +    +S  D   K++ +  G
Sbjct: 382 MLGLGYSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPHDATVKAMGQISG 439

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             V  ++      +PMA + G+V      FA+ +A  I  +A  ++ +   +
Sbjct: 440 AIVGITVVLVSVFVPMAFFDGAVGNIYRQFAVTLAVSIAFSAFLALSLTPAL 491



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 76/248 (30%), Gaps = 8/248 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +L      L +      S       +          G +       E ++   T    L 
Sbjct: 787  NLQGQMVPLSAFATLKWSMGPPQLNRYNGFPSFTINGSAAPGHSSGEAMRAMETLAAELP 846

Query: 650  TIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                 +  G      L   +  V   +S + + + +   ++ W   L  I  + L +   
Sbjct: 847  RGIGFDWSGQSYEERLSGNQAPVLFALSVLIVFLALAALYESWSIPLAVILVVPLGVIGA 906

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    + G+  ++     ++  IG S  + +++ +  +  ++             ++   
Sbjct: 907  LLGVTVRGMPNDIYFKVGLIATIGLSAKNAILIVEVAKDLVRD---GQGILSATLEAARL 963

Query: 768  TLGRSVYTSMAA---FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   V TS+A     + +   +        +    +  GI+ A   ++F+     L + 
Sbjct: 964  RLRPIVMTSLAFGVGVLPLALASGAASGAQAAIGTGVLGGIITATVLAVFLVPLFFLIVG 1023

Query: 825  DWRAKNAR 832
                  AR
Sbjct: 1024 RMVGMRAR 1031


>gi|213859625|ref|ZP_03385329.1| RND family, multidrug transport protein,acriflavin resistance
           protein F [Salmonella enterica subsp. enterica serovar
           Typhi str. M223]
          Length = 437

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/459 (11%), Positives = 124/459 (27%), Gaps = 30/459 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++   G L  +     Q  + ++P+  P                     
Sbjct: 7   RRPIFAWVLAIILMMAGALAIM-----QLPVAQYPTIAPPAV---------SISATYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    ++  + +        +     +  ITL+F      +    +V   LQ
Sbjct: 53  DAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +         ++++    D   +   + S  +     D I      
Sbjct: 113 LATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVASNIKDSISRLNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D + L +   T   +     + N+       G           
Sbjct: 173 GDVQLFGAQ-YAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +                      I          
Sbjct: 232 ASIIAQTRL-------------KDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +          +   T        A L+         +           S  
Sbjct: 279 ARINGKPASGLGIKLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+
Sbjct: 339 EVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGM 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR 458
           VL IGL VD  I+V E +     ++  S   + +   S+
Sbjct: 399 VLAIGLLVDGAIVVVENVERVMMEDNLSPREATEKSMSQ 437



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 71/208 (34%), Gaps = 4/208 (1%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V  +  V      + +E            +G+    + +
Sbjct: 232 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 291

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T   ++    ++    P               +  I + +  +  + I +
Sbjct: 292 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 351

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+  +V
Sbjct: 352 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDGAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINE 767
           V + +     +   ++S R+  +KS+++
Sbjct: 412 VVENV--ERVMMEDNLSPREATEKSMSQ 437


>gi|325915103|ref|ZP_08177429.1| protein translocase subunit secF [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538625|gb|EGD10295.1| protein translocase subunit secF [Xanthomonas vesicatoria ATCC
           35937]
          Length = 322

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 83/276 (30%), Positives = 151/276 (54%), Gaps = 5/276 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIP+   I FMR R   + + ++ ++ S+ ++   G NY ++F GG  +     + VD+
Sbjct: 7   HLIPNDTKIDFMRPRKPVLILMLILAVASVGIIVGKGFNYALEFTGGTLVQTSFQKTVDV 66

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR---VLEMVKKKITEIVPL 648
             VR  L      +   QN  G    ++RLQ +   +        V E V+K ++     
Sbjct: 67  DQVREQLSRAGFENAQVQNARGGNEVMIRLQAREQHNNRDDAARTVAEEVRKAVSTEQNP 126

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           +T+Q  E VGP++ ++L   G+   +   +  LIYI  RF+W FA+ A  T + D+  T+
Sbjct: 127 ATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALFDLLVTV 186

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   +++++SIN+T
Sbjct: 187 AFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRAL--RVEPLEVLNRSINQT 244

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           L R++ T++  F+S L + ++GG  +   A     G
Sbjct: 245 LSRTIITAVMFFLSALALYIYGGESMEGLAETHMIG 280


>gi|146341525|ref|YP_001206573.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           ORS278]
 gi|146194331|emb|CAL78354.1| Putative component of multidrug efflux pump, acrB/acrD/acrF family
           [Bradyrhizobium sp. ORS278]
          Length = 1047

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 76/574 (13%), Positives = 157/574 (27%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC  G+L       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVAIFICLGGILAI-----PFLPVAQYPIIAPP-------------SISISTSY 49

Query: 63  DDFVNG----FLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                      +    +E  +          +     + +I   F      E  A  V  
Sbjct: 50  PGASTENLYYSVTRLIEEELNGASGILNYESTSDTTGEVEIIAQFKPGTDIELAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ +  +L    +K  +V        +              I       R  + ++   
Sbjct: 110 RIKRIEPRLPEAVRKQGVVILEASSAILQFVTLTSTDGSLDEIGLGDVATRYVLPELRRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L  L  T   +       N+     + GV     + 
Sbjct: 170 PGVGRARLF-ATERAMRIWLDPDKLLGLGLTAQDVDAAIAAQNSQVASGILGVPPSPSTQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q +V  K ++                 +    +    +            I       
Sbjct: 229 RTQNMVLVKGQL-------------ESPEEFGNIVLRANLNGSTVKLSDVAKIEVGGLTY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +      A L     P     V          
Sbjct: 276 AFSSWLDGKPAAAVAVQLAPTGNALATAKAVKTRMAELAGFFPPGVKYEVSYDITPVIAA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + + ++ T A+L  LG ++ + ++
Sbjct: 336 SVKKVLMTLGEAVVLVFLVMFLFLQNIRYTLIPTIVVPIALLGTCAVLLSLGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      +    +    +  +   V 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMAEEGLSPREATVKAMEQITGAVIGITLVLMAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      + F+ +M +SI  S F A+S+  A+   +     +K I+         
Sbjct: 456 MAFFPGSVGIMYQQFSASMVVSIGFSAFLALSLTPALCATL-----LKPIEQGHGHAKGG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                   F R        +          +  +
Sbjct: 511 FFGWFNGWFGRVTSRYSAATRWVVARGGRFMIIY 544



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V            S          +       G+++A  + ++    ++    P 
Sbjct: 260 VKLSDVAKIEVGGLTYAFSSWLDGKPAAAVAVQLAPTGNALATAKAVKTRMAELAGFFPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                       +    ++K ++ +  + + + + +++  +   + L     + + +  T
Sbjct: 320 GVKYEVSYDITPVIAASVKKVLMTLGEAVVLVFLVMFLFLQNIRYTLIPTIVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  V+D +VV + +     +    +S R+   K++ +
Sbjct: 380 CAVLLSLGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLSPREATVKAMEQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GSV      F+  M   I  +A  ++ +   +   + 
Sbjct: 438 ITGAVIGITLVLMAVFVPMAFFPGSVGIMYQQFSASMVVSIGFSAFLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 85/272 (31%), Gaps = 13/272 (4%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                N     K    L           V  S+   +       Q    +    VR+   P
Sbjct: 767  VVQANDDKRTKPEHLLTYSVRNNAGEMVPFSSFARIAWSVGPTQVVGFDGYPSVRITGNP 826

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI- 684
                     +  +++ +     L         G  +  +L        ++    + +++ 
Sbjct: 827  KPGYTSGDAIAEMERLM---GTLPKGFGYAWTGQSLQEKLA-GSQAAFLLGLSILFVFLC 882

Query: 685  --WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
               +   W      +  + L +  ++    L G+  ++     V+T+IG S  + +++ +
Sbjct: 883  LAALYESWAIPFAVMLAVPLGLIGSVAAAWLRGLPNDVYFTVGVITIIGLSAKNAILIIE 942

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
              +    L        +    +        + TS+A  + V+P+ +     G+   +   
Sbjct: 943  FAKD---LRARGTPLIEATVTACELRFRPIIMTSLAFILGVVPLVIATGASGASQQALGT 999

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  G++ A   ++F      + +  +  ++ 
Sbjct: 1000 GVLGGMLTATFLAVFWVPVFFVMVIRFFTRHK 1031


>gi|300696877|ref|YP_003747538.1| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum CFBP2957]
 gi|299073601|emb|CBJ53121.1| component of acridine efflux pump, multidrug efflux system
           [Ralstonia solanacearum CFBP2957]
          Length = 1049

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/554 (11%), Positives = 151/554 (27%), Gaps = 41/554 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I  +G++       P   + R+PS  P               + L   
Sbjct: 7   RRPVFAWVIALFIILLGVIAI-----PNLPIARYPSVAPPT-------------VNLSAT 48

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            S       I  +F            V 
Sbjct: 49  YPGATPQTMNDGVISLIERELSSVKNLLYFESSSDTSGSASIVATFKPGTDPAMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ +  +L    ++N L   +     +++     D         S  + R  ++++  
Sbjct: 109 NKLKAIEPRLPQAVRQNGLTVESASSGFLMIIGLQSDDGRFDETALSDYMARNVVEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     +   +S      N        G      +
Sbjct: 169 IEGVGRVQLFGA-EQAMRIWVDPAKLIAYGLSMNDLSAAVSQQNAQIAPGSVGASPALPA 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +        +        +      
Sbjct: 228 QRVTVPLTVQGQLT-------------SPEQFAAIVLRANANGSKVVMGDVARVELGAQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T E      A L           +         
Sbjct: 275 YGFINRENGKAATAAAVQLAPGANAVRTAEGVQARMAELSKTMPAGMSYSIPLNTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++   G ++ + +
Sbjct: 335 ISIEKVIQTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALLGTFTIMLASGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +     ++  S   +           +    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMAQEGLSPRDATIKAMKEITGAVIGITLVLTAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +    G      + F ++M +SIL S F A+++  A+   +++       +       F
Sbjct: 455 PMALASGSVGVIYQQFTLSMAVSILFSAFLALTLTPALCATLLQPVDPAHHEKRGFFGGF 514

Query: 533 LIPDCIAIQFMRAR 546
                   Q   +R
Sbjct: 515 NRRFDRITQGYASR 528



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 89/241 (36%), Gaps = 14/241 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q      +                 ++V     ++    ++++ +
Sbjct: 258 SKVVMGDVARVELGAQSYGFINRENGKAATAAAVQLAPGANAVRTAEGVQARMAELSKTM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +  +      +  I K I  +I + + + + +++     R+    A+ A   L+
Sbjct: 318 PAGMSYSIPLNTAPFVKISIEKVIQTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALL 377

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              T  L      G   N+  +  ++  IG  V+D +VV + +     +    +S RD  
Sbjct: 378 GTFTIMLA----SGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAQEGLSPRDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            K++ E  G  +  ++      +PMA+  GSV      F + MA  I+ +A  ++ +   
Sbjct: 432 IKAMKEITGAVIGITLVLTAVFIPMALASGSVGVIYQQFTLSMAVSILFSAFLALTLTPA 491

Query: 819 I 819
           +
Sbjct: 492 L 492



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 61/150 (40%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L +   +    L G+  ++     +
Sbjct: 865  QAPMLMALSMLVVFLVLAALYESWAIPLSVMLVVPLGLLGAVLAVLLRGMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L        +    +    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAK---QLREQGKGLAESAVTAARLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             +  G       +    +  G+V A   +I
Sbjct: 982  MIAMGASAETQHAIGTGVFGGMVSATVLAI 1011


>gi|85860991|ref|YP_463193.1| acriflavin resistance plasma membrane protein [Syntrophus
           aciditrophicus SB]
 gi|85724082|gb|ABC79025.1| acriflavin resistance plasma membrane protein [Syntrophus
           aciditrophicus SB]
          Length = 1077

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 68/695 (9%), Positives = 168/695 (24%), Gaps = 57/695 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G L           + ++P   P               + +    
Sbjct: 10  RPVFAWVIAIIMMAAGALAI-----YNLPVSQYPPIAPP-------------SIAITAFY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S     ++I L+FA     +    +V  
Sbjct: 52  PGASAETVENSVTQIIEQKMTGFDKLLYLSTSSDSAGSSRIELTFAPGTDPDMAWSQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L    + + +         +++     +       +            +   
Sbjct: 112 KLQLAMASLPEVVQSSGVKVAKSTRNYLMIVGLVSEDGSMDGNDLRDYAQSSLEKVLSRV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P +L     T   +       N       FG        
Sbjct: 172 PGVGEVEIFGSQ-YAMRVWLNPDKLTDYRMTVQDVVTALKAYNAEVSAGQFGGAPAVPGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                            V 
Sbjct: 231 RLNAAIVVQSML-------------KTPEEFAAVPLRTNPDGSVVRIRDVGRTELGTEVY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T +        +          +           
Sbjct: 278 DIQAYFNGKPSAGMAIRQAASANALETADNVRAKLEEMSHYFPAGMKIVYPYDTTPFVKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++ + ++
Sbjct: 338 AIKEVVKTLIEAIVLVFLVMYLFMGNLRATLIPTIAVPVVILGTFAVLGFFGFSINMLTM 397

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +      +  S +    +        
Sbjct: 398 FAMVLAIGLLVDDAIVVVENVERIMTEEGLLPKGATRKSMDQITSALIGIGLVLSAVFGP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMM----------------IFIIRY 517
           + FFGG      R F++T+  S+L+S+  A+ +   +                       
Sbjct: 458 MAFFGGSTGVIYRQFSVTIIASMLLSVVVALILTPVLCSSLLKPVAAGHNPADNAVFFLR 517

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
                 D   L    L  + I     R   + V   ++ +      L         + +G
Sbjct: 518 PFFIWFDRTFLRIRNLYVNLIGHSLSRISRYLVIFLLIVAAMGFLFLRMPTAYLPDEDQG 577

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + +  L      L      +E++Q   +  +    E    +      G           
Sbjct: 578 VLMVQALLPANSTLEQTERIMENVQAHFLENEKDAVEHVMTISGMNFSGRGQNAGLAFVK 637

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           ++       P   +             +    +  
Sbjct: 638 LRDWELRDRPDLKVDAVAGRAMGQFSSIRNAMVFA 672



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 75/201 (37%), Gaps = 15/201 (7%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +      LE +       + +    +T        +E+++  I  +++  + M +++ 
Sbjct: 303 ETADNVRAKLEEMSHYFPAGMKIVYPYDTTPFVKVAIKEVVKTLIEAIVLVFLVMYLFMG 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + I  T      FG   N+  + A++  IG  V+D +VV + + 
Sbjct: 363 ---NLRATLIPTIAVPVVILGTFAVLGFFGFSINMLTMFAMVLAIGLLVDDAIVVVENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +  +    KS+++     +   +       PMA +GGS       F++   
Sbjct: 419 -ERIMTEEGLLPKGATRKSMDQITSALIGIGLVLSAVFGPMAFFGGSTGVIYRQFSVT-- 475

Query: 803 FGIVVAASSSIFIA---APIL 820
             I+ +   S+ +A    P+L
Sbjct: 476 --IIASMLLSVVVALILTPVL 494



 Score = 38.9 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 78/247 (31%), Gaps = 14/247 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A + V  S   +   +     +   N     N             A   +   +KK   
Sbjct: 800  TAGKMVPFSAFATGHWTSGSPKLQRYNGFPSINIQGESAPGRSSGEAMRAMEGFIKKLPQ 859

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I    T  + +         L+         S   + + +   ++ W   +  + TL L
Sbjct: 860  GIGFDWTGLSYQERMSSAQAPLLY------AFSIFVIFLCLAALYESWPIPIAILLTLPL 913

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +   +L G+  ++     +LT +G +  + +++    +         +   +   
Sbjct: 914  GMIGGVIASSLRGLPNDVYFQIGLLTTLGLTTKNAILIVQFAK---TGREQGMGLIEATL 970

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +         V TS+A    VLP+A+    G     +    +  G+V A    + I  P+
Sbjct: 971  EGAKLRFRPIVMTSLAFGFGVLPLALTTGAGAGAQNAIGTGVLGGMVTATVL-VVIFTPL 1029

Query: 820  LLFIYDW 826
               + + 
Sbjct: 1030 FYVLIER 1036


>gi|92116328|ref|YP_576057.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrobacter hamburgensis X14]
 gi|91799222|gb|ABE61597.1| Hydrophobe/amphiphile efflux-1 HAE1 [Nitrobacter hamburgensis X14]
          Length = 1057

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 148/547 (27%), Gaps = 31/547 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G++      L    +  FP   P                      
Sbjct: 10  RPIFASVVSIILTLVGVIA-----LRALPITEFPEIAPPTIE---------VTATYAGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
            D V   +    ++  + +      V          I + F      ++    V   +  
Sbjct: 56  ADIVAETVASPIEQEINGVDNMIYMVSQSTGDGTTKIDVVFKPGTNIDDAQVLVQNRVSI 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + +L  + ++  +    +    +++               S        D +   +   
Sbjct: 116 ASPRLPEEVQRVGVTVKKKSPDLMMVIHLISPDGALDQSYISNYATINIKDVLTRVDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +    DP++++    T + +       N             +   G + 
Sbjct: 176 DTIVFGARDYSMRIWLDPAKVQSRGLTASDVITALRGANIQVAAGAINQPPAKSPVGFEV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+    +S                +    I   +             +           
Sbjct: 236 AVQTLGRLS-------------SPEQFSDIIVATDQDGGVTRVRDIARVELGAYTYTTNA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L   V        +   +   T          L     P     +          S   
Sbjct: 283 YLDGKVATAIGIFQRPGSNALKTAAAVIATMDELAKNFPPGLGYRIAYNTTEFVQQSVDE 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   +I +++I T  +L   G +L   ++ G+V
Sbjct: 343 VIRTLFEALVLVVLVIILFLQTWRAAIIPVVAIPVSLIGTFFVLEAFGFSLNNLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E +    R+  S   +          A   I        I +  + 
Sbjct: 403 LAIGIVVDDAIVVVENVERYLRQGLSPREAAHKTMDEVGGALIAIALVLCAVFIPSAFIA 462

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+  S +IS   ++++  A+    +R    +      ++         
Sbjct: 463 GISGAFYRQFALTIVSSTIISAIVSLTLSPALAALFLRPHGHEQKPGFWMTVGRPFNAFF 522

Query: 539 AIQFMRA 545
           A      
Sbjct: 523 AGFNRGF 529



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 64/164 (39%), Gaps = 8/164 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               ++    + + + + +  +++     L  I  + + +   +    L G++ N+     
Sbjct: 880  NTAVIAFSFAVVFVFLLLAAQYESVLLPLAVILIVPMCLLAAVSGVLLRGMDNNILTQIG 939

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             + LIG +  + +++ +  R   +      S  D   ++    L   + TS+A  + V+P
Sbjct: 940  FVVLIGLAAKNAILIVEFAR---QAEEGGASRWDAAVQAARTRLRPILMTSLAFILGVVP 996

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + +    G  +  +    + FG++      + +  P+   +  W
Sbjct: 997  LVIATGAGAELRQALGTAVFFGMLGVTLFGL-VFTPVFYVLVRW 1039


>gi|258625385|ref|ZP_05720279.1| multidrug resistance protein, putative [Vibrio mimicus VM603]
 gi|258582296|gb|EEW07151.1| multidrug resistance protein, putative [Vibrio mimicus VM603]
          Length = 1036

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 61/651 (9%), Positives = 172/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +     TT+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRLKPELMAGRGVTTSDISEALNKENIESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSPEDFEYLVVKRASDGTPVYLKDVSDVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQFIDRLFAGLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRKIVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLIPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILDDWNE 624



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPVYLKDVSDVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|295700009|ref|YP_003607902.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1002]
 gi|295439222|gb|ADG18391.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1002]
          Length = 1061

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 155/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++        +  +  +P  +P + +          H       
Sbjct: 10  RPIFAGVLSVLILLGGIISLF-----KLPISEYPEVVPPSVV---------VHAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAEAVAAPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTNPDLATQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGVTTIKSSPTLTMVVHLISPNDRYDMTYLRNYALLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N      + G          Q 
Sbjct: 176 EVQLWGSGDYAMRIWLDPQKVAQRGLTATEVVNSIREQNIQVAAGVIGASPSVPGTQLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      I    +      
Sbjct: 236 SVNARGRLRTES-------------EFGDIIVKTAADGGVTYLRDIARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     E        L           +          S   
Sbjct: 283 LLDNKPAVALAINQAPGANSLAISEQVRAAMKELAQDMPAGVEYRIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGLSARDATYKAMREVSGPIIAIALTLVAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   ++R    K   +  +    L     
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLRSHGEKEDWLTRVMNRVLGGFFK 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 RFNKVFHR 530



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSVLSALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S      ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEHDGRSPLQAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      + +     + + 
Sbjct: 1019 LGVTLFGLMLTPVFYVVLR 1037



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 82/198 (41%), Gaps = 7/198 (3%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             Q    +S+A +  +    K++ + +P            +  R  I   I  ++ +   
Sbjct: 294 INQAPGANSLAISEQVRAAMKELAQDMPAGVEYRIVYDPTQFVRSSIEAVIHTLLEAIAL 353

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           ++I + +  + W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +
Sbjct: 354 VVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAI 413

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIG 795
           VV + + +N+    + +S RD   K++ E  G  +  ++   A    L       G    
Sbjct: 414 VVVENVERNI---ESGLSARDATYKAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYK 470

Query: 796 SFAIPMAFGIVVAASSSI 813
            FA+ +A   V++A +S+
Sbjct: 471 QFAMTIAISTVISAFNSL 488


>gi|254000418|ref|YP_003052481.1| multidrug efflux protein [Methylovorus sp. SIP3-4]
 gi|253987097|gb|ACT51954.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylovorus sp. SIP3-4]
          Length = 1040

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/616 (10%), Positives = 175/616 (28%), Gaps = 42/616 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPVFAWVIALLIILSGILAI-----RGLPIAQYPDIAPPVV---------NISASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + ++       +  Q    ++L+F      +  A  V   L+ +
Sbjct: 54  ARVVEETVTSVIEREMNGVQGLMYISATSSQGSAGLSLTFKQGVNPDLAAVDVQNRLKTI 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    ++N +      +   ++     D   +  ++         I  +   +   +
Sbjct: 114 EVRLPEIVRRNGISVEKSADSFQLIVSLTADDASTSEVDLGELASANVIQTLRRVQGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  T A ++      N        G   + ++      
Sbjct: 174 VQSF-SPEYAMRIWPDPKKMAALNVTAADIASAIRSYNARVTVGQIGANGVPENSPISAS 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E    ++                                       +    +       
Sbjct: 233 IESDAVLA-------------TPEDFGNVQLRTNADGSALLVKDLAKVELGSSDYSFSSK 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T++        L+    P     +          S    
Sbjct: 280 VNGKNAAGMAIKMAPGSNAVATVKRIRAALDELQTYFPPGVTYQISYDTSAFVSISIEKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+++ +   +  L+    + + ++ T +++  LG ++ + ++ G+VL
Sbjct: 340 LNTLLEAIVLVFLVMYLFMQNFRATLIPTVVVPIALMGTFSVMYALGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  S + +     S+    I    +  +   + + FF 
Sbjct: 400 AIGIVVDDAIVVVENVERLMAEEGLSPYDATVKAMSQISGAIVGITVVLVSVFIPMAFFS 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPL 528
              G   R F++++ +SI  S F A+S+  A+   +                   +    
Sbjct: 460 GAVGNIYRQFSLSLSVSIAFSAFLALSLTPALCATLLKPITPGDAHGSRGFFGWFNRRFA 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                          +   W V    + ++ ++  +         + +G   + V+  + 
Sbjct: 520 WLTDHYQGRTKKILQKPIRWMVVYGSILAVVALLFVRLPTAFLPDEDQGNFMVVVMLPQG 579

Query: 589 VDLSVVRSNLESLQIG 604
             ++   + L  +   
Sbjct: 580 ATMAETDAVLSEISQY 595



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 65/160 (40%), Gaps = 7/160 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             +S + + + +   ++ W   L  I  + L +   L    L  +  ++     ++  IG 
Sbjct: 873  GVSILIVFLALAALYESWLIPLSVILVVPLGVLGALLGVTLRDMPNDIYFKVGLIATIGL 932

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG- 791
            S  + +++ +  +    LY   ++  D   ++  + L   V TS+A  + VLP+A+  G 
Sbjct: 933  SAKNAILIVEFAKD---LYAGGMNIIDATVEASRQRLRPIVMTSLAFGVGVLPLALATGA 989

Query: 792  --SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                  +    +  GI+ A   +IF+       I  +  +
Sbjct: 990  ASGAQSAIGTSVLGGIISATVLAIFLVPLFFALIGRYIKR 1029



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 95/258 (36%), Gaps = 7/258 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  G +QL   A+    L    + +E            +G+    + ++  PG +   T
Sbjct: 242 PEDFGNVQLRTNADGSALLVKDLAKVELGSSDYSFSSKVNGKNAAGMAIKMAPGSNAVAT 301

Query: 633 -RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
            + +     ++    P                  I K +  ++ + + + + +++  + +
Sbjct: 302 VKRIRAALDELQTYFPPGVTYQISYDTSAFVSISIEKVLNTLLEAIVLVFLVMYLFMQNF 361

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     + + +  T       G   N+  +  ++  IG  V+D +VV + +     +
Sbjct: 362 RATLIPTVVVPIALMGTFSVMYALGFSINVLTMFGMVLAIGIVVDDAIVVVENV--ERLM 419

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               +S  D   K++++  G  V  ++      +PMA + G+V      F++ ++  I  
Sbjct: 420 AEEGLSPYDATVKAMSQISGAIVGITVVLVSVFIPMAFFSGAVGNIYRQFSLSLSVSIAF 479

Query: 808 AASSSIFIAAPILLFIYD 825
           +A  ++ +   +   +  
Sbjct: 480 SAFLALSLTPALCATLLK 497


>gi|88856262|ref|ZP_01130922.1| protein export protein SecF [marine actinobacterium PHSC20C1]
 gi|88814581|gb|EAR24443.1| protein export protein SecF [marine actinobacterium PHSC20C1]
          Length = 338

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 133/312 (42%), Gaps = 12/312 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQLGVL 584
                  L    +++ F+  R     ++ +    SI +    G   +GI+F GG Q  + 
Sbjct: 4   FSKFGNDLYTGQVSVNFIGRRRVWYILAAVLLAVSIIVPTLRGGYVFGIEFTGGSQFQID 63

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ---PGDSVAQTRVLEMVKKK 641
           +   +      ++ ++L    +     D +    V          + +  +   E+    
Sbjct: 64  SVEALANPDTNADAQNLATDTVISVVADADPKVTVVGTDSLRIQTEQLEPSSSNEVRDAL 123

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
                  +       VGP    ++    +  +++      I + I F+ W  ++ A+  L
Sbjct: 124 AGAFNVDNDQVAASFVGPSWGADITSSALRALLVFIGLAAIMMAIYFRTWKMSIAAMIAL 183

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFR 758
           + DI  T G + +FG E   +AV   LT++G+S+ D VVV+D++R+N       +  +F 
Sbjct: 184 LHDIVITAGVYGIFGFEITPSAVIGFLTILGFSLYDTVVVFDKIRENTSEDGAESRRTFA 243

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSI 813
           + ++ ++N+TL RS+ T + A + V  +      V G   +   A+ +  GIVV   S+I
Sbjct: 244 ESVNLAVNQTLVRSINTGVVAALPVGAILFIGAYVLGAGTLRDIALALFIGIVVGTYSTI 303

Query: 814 FIAAPILLFIYD 825
           FIAAP+     +
Sbjct: 304 FIAAPLYAQFRE 315


>gi|264676314|ref|YP_003276220.1| hydrophobe/amphiphile efflux-1 transporter [Comamonas testosteroni
           CNB-2]
 gi|262206826|gb|ACY30924.1| hydrophobe/amphiphile efflux-1 transporter [Comamonas testosteroni
           CNB-2]
          Length = 1064

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 156/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  ++  +GL+       PQ  +  +P  +P + +                  
Sbjct: 10  RPIFAVVLSIIMFAVGLVAI-----PQLPVGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   + +  +E  + ++             + ++  +F      +  A +V   +  
Sbjct: 56  PKEVAESVAVPLEEAINGVEGLMYMKSVAASDGSLQVVATFRPEIDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            A+     +  +  D +       
Sbjct: 116 AQSRLPEEVRQFGVTTQKQASTPLMYVGLVSRDGAHDALYLRNHVTLKIKDVLARIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T  ++       N        G            
Sbjct: 176 DVGIYGAGDYAMRVWLDPHKVAARQLTAGEVIAAIREQNIQVSAGQLGAEPSAQKSDKLL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +               T +    +     G +         I    +      
Sbjct: 236 SINVRGRL-------------KTTEEFGSIVLKSGEGGQVVRLADVARIELGASDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +     E        L                      S   
Sbjct: 283 WSDTKNMAAVGIFLSPGANALGVAEQVYAAMDRLSKDLPEGVAFESVWDPTVFVRDSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ +++I T A L LLG ++   ++ G+V
Sbjct: 343 VQSTLIEAVILVVLVVIVFLQTWRASIIPLLAVPVSIIGTFAGLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+ VD  I+V E +     +  S   +  +        I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERYIEQGHSPQEAAHLAMKEVSGPIIAIALVLCAVFVPMAFLS 462

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++        +  +    L     
Sbjct: 463 GVTGQFYQQFAVTIAISTVISAINSLTLSPALAAKLLQPHGAPRDALARVIDKGLGWFFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 PFNRFFDR 530



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 6/156 (3%)

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +  L+   +   W   L  I  + + I   L    L G + N+     ++ L+G +  +
Sbjct: 888  MLVFLVLAALYESWTLPLAVILIVPVCICAALFGVWLAGGDNNVFVQVGLVVLMGLACKN 947

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SV 793
             +++ +  R+   L        D   ++    L   V TS+A     +P+ + GG    V
Sbjct: 948  AILIVEFARE---LEMRGSPTVDAALQACRLRLRPIVMTSIAFIAGAVPLLIGGGAGSEV 1004

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  + +  G++      +F+     + +     +
Sbjct: 1005 RAATGVTVFSGMLGVTLFGLFLTPVFYVTLRRLSGR 1040



 Score = 43.9 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 76/198 (38%), Gaps = 9/198 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 ++ + K + E V   ++ +  +      + +    I  VI+  + +++++    
Sbjct: 307 EQVYAAMDRLSKDLPEGVAFESVWDPTVFVRDSIKAVQSTLIEAVILVVLVVIVFLQTWR 366

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + I  T     L G   N   +  ++  IG  V+D +VV + +    
Sbjct: 367 ASIIPL---LAVPVSIIGTFAGLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENV---E 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +      S ++    ++ E  G  +  ++      +PMA   G        FA+ +A   
Sbjct: 421 RYIEQGHSPQEAAHLAMKEVSGPIIAIALVLCAVFVPMAFLSGVTGQFYQQFAVTIAIST 480

Query: 806 VVAASSSIFIAAPILLFI 823
           V++A +S+ ++  +   +
Sbjct: 481 VISAINSLTLSPALAAKL 498


>gi|303231476|ref|ZP_07318206.1| putative multidrug efflux pump BpeF [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513819|gb|EFL55831.1| putative multidrug efflux pump BpeF [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 1069

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 85/693 (12%), Positives = 202/693 (29%), Gaps = 33/693 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  MI  IGLL  +        + R+P   P +              +     
Sbjct: 8   RPIFAIVIAIMITLIGLLSMV-----NLPVARYPQISPPSVR---------VSTMYTGAT 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +N  +    +     ++                ++L F      +         +Q 
Sbjct: 54  PQVLNDTVASVIESQIVGVQDLDYMTSDSASTGTYSLSLQFNQGSDPDMDTVNTQNRVQA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + ++  + TT        +   N       +           +D I   +   
Sbjct: 114 ALAQLPSEVQQVGVTTTKSSGDMAYIFSLNSPNGTFDSTFLKNYGTNYLMDAIKGVKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DPS++++L  T + ++      N        G          QY
Sbjct: 174 SVQEFGS-DYAMRIWLDPSKMQKLGITMSDVTSAIKSQNVQAAAGTVGKNPTNGEQAFQY 232

Query: 242 LVE-DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            ++ D   ++              T   + DI+  ++GA+ +  V + +   P A   + 
Sbjct: 233 PIKIDGRLVTEQQFGNIVIKNSNGTVLHLKDIARIDVGAKGYDFVAKSSYRDPNAPSGEI 292

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          S +   +   TI     +                   N      S +
Sbjct: 293 LFVEHRPSAGFAISLQNDANALETISNVQKILQEQSKSFPQDLEYHEVVDNTKFVRASIN 352

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T      LVLIV+++ +   +  L+   ++ ++++ T     LL  ++   ++  +
Sbjct: 353 EVEHTFFEALLLVLIVVYVFLQSWRSTLIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAM 412

Query: 421 VLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +  E      S   +           +           V + F
Sbjct: 413 VLAIGLVVDDAIVVVEAVEYELKYNGLSPKEAAIAAMKNVQGPVVGIAFVLAAVFVPVAF 472

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDI 525
            GG      + FA+T+ +S+ IS   A+ +  ++   +             ++++   + 
Sbjct: 473 MGGMTGILYKQFALTIAVSVAISAVVALILTPSLCALMLKPHVQNEREDFVHRQLNKFNR 532

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +A    R     + + +  +   I   F        +  G   + V  
Sbjct: 533 GLERFSDWYGKVLARLSHRLSLTVITLLVFAAGTGIVFHFLPTSFVPAEDSGYFLIAVNE 592

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                 +     L+ ++               +  +        +Q     +    + + 
Sbjct: 593 PPGATSARTVETLDKIKDFLEQTPGIKDNVEQVFTVSGFDLLGGSQKSSAGVSFAVLKDW 652

Query: 646 VP-LSTIQNTEIVGPKISRELIRKGIVGVIISA 677
               S+ Q+   +   +     +      +++ 
Sbjct: 653 DQRKSSNQSVNAMVGAVFGFGAKNVPEASVVAL 685



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 56/140 (40%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T G F L     N   + A++  IG  V+D +VV + +    
Sbjct: 375 SWRSTLIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIVVVEAV--EY 432

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +L    +S ++    ++    G  V  +       +P+A  GG        FA+ +A  +
Sbjct: 433 ELKYNGLSPKEAAIAAMKNVQGPVVGIAFVLAAVFVPVAFMGGMTGILYKQFALTIAVSV 492

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A  ++ +   +   +  
Sbjct: 493 AISAVVALILTPSLCALMLK 512



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 77/248 (31%), Gaps = 14/248 (5%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +      ++ +    D +       +          G +       + ++          
Sbjct: 811  NSKGQMVSIANYITKDKTSTPSSITRFDNAMAVKIGGSAAQGYASGDAIQALKDAAAKTL 870

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITK 706
                T   G +   EL       +I+      +++    +   W      + ++   +  
Sbjct: 871  PAGYTYDWGDQSREELKAGSQTMLILGLGLTFVFLILAALYESWKVPFAVLFSVPSGMIG 930

Query: 707  TLGFFALFGIEF------NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                  L           ++     +LTL+G +  + +++ +  +  +++    +   D 
Sbjct: 931  AALVPFLLNFTGRFQLANDIYMQIGLLTLVGLAAKNAILIIEYAK--IRVDERGMDVVDA 988

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
              ++    L   + TS A  + VLP+A+    G     S  I +  G+  A    IFI  
Sbjct: 989  AIEAAKIRLRPILMTSFAFILGVLPLAISTGAGSGARTSMGITVVAGMTTATFFGIFIIP 1048

Query: 818  PILLFIYD 825
             + + +  
Sbjct: 1049 MLFIIVEK 1056


>gi|225677040|ref|ZP_03788049.1| protein-export membrane protein SecF [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225590916|gb|EEH12134.1| protein-export membrane protein SecF [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 291

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 96/291 (32%), Positives = 166/291 (57%), Gaps = 10/291 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIPD + I+F + R     ISI+  I SI  +   G+N GIDF GGI + + +      
Sbjct: 4   RLIPDNLNIKFSKYRDLTALISIILIIFSIFTVVLRGVNLGIDFAGGILIEIKS-----S 58

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
               S L++L+    + Q+     N ++R +    D   + ++ ++      ++    + 
Sbjct: 59  DENHSILDALKENGFTVQSSKAGDNLVMRFK----DEGDEDKIKKIKSILEEKLGSSISY 114

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  + VGP+IS   I +G++ ++I+ + +  Y+W RF W      IT LI D+  T+GF 
Sbjct: 115 RKIDYVGPQISSTQIFEGMLSMLIAIVGIFFYVWFRFNWQCGFSGITALIHDVILTVGFI 174

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L GIEFN+++VAA+LT+IGYS+N+ V++YDR+R+  K   +     +++D SIN TL R
Sbjct: 175 SLTGIEFNISSVAALLTVIGYSINNSVIIYDRIREYCKSGKSGR-MSEIVDASINATLFR 233

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++ TS    ++ LP+A+     +  F++ + FGI++   S+IFI+APIL +
Sbjct: 234 TILTSGTTLLAALPLALICTDAVKDFSLIIFFGILIGTCSAIFISAPILTY 284


>gi|194099137|ref|YP_002002222.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           NCCP11945]
 gi|239999436|ref|ZP_04719360.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           35/02]
 gi|240017057|ref|ZP_04723597.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           FA6140]
 gi|240113514|ref|ZP_04728004.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           MS11]
 gi|240116133|ref|ZP_04730195.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           PID18]
 gi|240118417|ref|ZP_04732479.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           PID1]
 gi|254494153|ref|ZP_05107324.1| drug efflux protein [Neisseria gonorrhoeae 1291]
 gi|260440055|ref|ZP_05793871.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           DGI2]
 gi|268595256|ref|ZP_06129423.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           35/02]
 gi|268599581|ref|ZP_06133748.1| drug efflux protein [Neisseria gonorrhoeae MS11]
 gi|268601801|ref|ZP_06135968.1| drug efflux protein [Neisseria gonorrhoeae PID18]
 gi|268604133|ref|ZP_06138300.1| drug efflux protein [Neisseria gonorrhoeae PID1]
 gi|291043343|ref|ZP_06569066.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           DGI2]
 gi|193934427|gb|ACF30251.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           NCCP11945]
 gi|226513193|gb|EEH62538.1| drug efflux protein [Neisseria gonorrhoeae 1291]
 gi|268548645|gb|EEZ44063.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           35/02]
 gi|268583712|gb|EEZ48388.1| drug efflux protein [Neisseria gonorrhoeae MS11]
 gi|268585932|gb|EEZ50608.1| drug efflux protein [Neisseria gonorrhoeae PID18]
 gi|268588264|gb|EEZ52940.1| drug efflux protein [Neisseria gonorrhoeae PID1]
 gi|291012949|gb|EFE04932.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           DGI2]
 gi|317164684|gb|ADV08225.1| antibiotic resistance efflux pump component [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 1067

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 161/570 (28%), Gaps = 40/570 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+       +    + ++PS      I+L        H +     
Sbjct: 8   RPIFAWVISIFIIAAGIF-----GIKSLPVSQYPSVAAPT-ITL--------HAIYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              + G +    +   + ++       S        ++L+F     +     +V   L  
Sbjct: 54  AQVMEGSVLSVIERNMNGVEGLDYMSTSADSSGSGSVSLTFTPDTDENLAQVEVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L    ++  +  +  +   +++   + D  +    E +    R  + ++   E   
Sbjct: 114 VLSTLPATVQQYGVTVSKARSNFLMIVMLSSD--VQSTEEMNDYAQRNVVPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L+    + A +       N        G            
Sbjct: 172 QVRLFGAQR-AMRIWVDPKKLQNYNLSFADVGSALSAQNIQISAGSIGSLPAVRGQTVTA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                 +    I          +      +G  +       
Sbjct: 231 TVTAQGQLG-------------TAEEFGNVILRANTDGSNIYLKDVAKVGLGMEDYSSST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A+L                      S   
Sbjct: 278 RLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYFPQGMSWKTPYDTSKFVEISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   ++ L+    + ++++   A +S +G ++ + ++  + 
Sbjct: 338 VIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMT 397

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    +       +   V L  F
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAGEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+TM  SI  S F A+++  A+         +K+I              
Sbjct: 458 SGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT-----MLKTIPKGHHEEKKGFFGW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
              +F        G        +  ++  +
Sbjct: 513 FNKKFDSWTHGYEGRVAKVLRKTFRMMVVY 542



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 100/291 (34%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       ++V  S + ++   + + Q+     
Sbjct: 759  FPNQGRLQRVMVQADEDARMQPADILNLTVPNKSGVAVPLSTIATVSWENGTEQSVRFNG 818

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++L   P   V+  + +  V+K + E+    + +       +   +   + ++   +
Sbjct: 819  YPSMKLSASPATGVSTGQAMAAVQKMVDELGGGYSFE--WGGQSREEAKGGSQTLILYGL 876

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG-----------FFALFGIEFNLTAV 723
            +  A+ + +   ++ W   L  I  + L +                  ++     ++   
Sbjct: 877  AVAAVFLVLAALYESWSIPLAVILVIPLGLIGAAAGVTGRNLFEGLLGSVPSFANDIYFQ 936

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +T++G S  + +++ +  +    L     S  +   ++        + TS A  + V
Sbjct: 937  VGFVTVMGLSAKNAILIIEFAKD---LQAQGKSAVEAALEAARLRFRPIIMTSFAFILGV 993

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+ +  G+      +    + +G+++    S+F+     + +  +  + A
Sbjct: 994  VPLYIAAGASSASQRAIGTTVFWGMLIGTLLSVFLVPLFYVVVRKFFKETA 1044



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  V      ++    S +        +  +    G+++A  + ++     + +  
Sbjct: 256 SNIYLKDVAKVGLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATAKAVKERLAVLEKYF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P      T     K     I K I  +I + + + + +++  +   + L     + + + 
Sbjct: 316 PQGMSWKTPYDTSKFVEISIEKVIHTLIEAMVLVFVVMYLFLQNIRYTLIPTIVVPISLL 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
               F +  G+  N+  + A+  +IG  V+D +VV + +     +    +  ++   K++
Sbjct: 376 GGFAFISYMGMSINVLTMFAMTLVIGIVVDDAIVVVENV--ERIMAGEGLPPKEATKKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  +  +       +P+A++ G+   +   FA+ MA  I  +A  ++ +   +   
Sbjct: 434 GQISGAVIGITAVLISVFVPLAMFSGAAGNIYKQFALTMASSIAFSAFLALTLTPALCAT 493

Query: 823 IYDWRAK 829
           +     K
Sbjct: 494 MLKTIPK 500


>gi|110679770|ref|YP_682777.1| RND multidrug efflux transporter protein [Roseobacter denitrificans
           OCh 114]
 gi|109455886|gb|ABG32091.1| RND multidrug efflux transporter protein [Roseobacter denitrificans
           OCh 114]
          Length = 1043

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 70/526 (13%), Positives = 161/526 (30%), Gaps = 40/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++ +++  +GL+           +++FP+  P               + +   
Sbjct: 8   KRPKMAIVISTVLTLMGLVA-----YSVIPVEQFPNITPPV-------------VNVTAS 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++      + + +   E +   S          ++++F            V 
Sbjct: 50  YIGANAETVESTVAAPIEAEVNGVEDMIYMSSDSSDTGSYSLSVTFDVGTDPTIATVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    S L V+     +VT       ++++           +  S        D +  
Sbjct: 110 NRVSQAMSGLPVEVTSTGVVTEKSSTSMLLVATLFSPNGTYDEVFLSNYASINLKDALAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           +    +          +    DP R+  L  T A +       N +      G     ++
Sbjct: 170 APGVGKAEVLTDFAYAMRIWMDPDRMTGLGVTQADVMAAIREQNLTVSAGQIGAPPAPEN 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY V  +  ++                +    I                 I    + 
Sbjct: 230 QQFQYTVTAQGRLA-------------TVAEFENIIIRTGDSGSVLRMKDIARIELGASS 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +     E        L           V   +     
Sbjct: 277 YSVSGQYEGQPATVIAVYQAPGENALSVAEGVYAELDRLSQAFPDDIAYEVPFDSTDFVE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S +    T  +   LV+ V+F+ +   +  L+   +I +++I T A L L+G TL   S
Sbjct: 337 QSLNDVVSTLILTFILVMSVVFVFLGSARATLIPAVAIPVSLIGTFAFLLLMGMTLNTIS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E +      +  S   +     ++  + +  + +  L   V
Sbjct: 397 LFALVLAIGIVVDDAIIVVENVERVIAEEGLSPPEATAKAMTQITTPVIATTLVLLAVFV 456

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
            + F  G +      FA+T+ ++++IS   A+++  A+   +++ +
Sbjct: 457 PVTFMPGISGQLFSQFAVTISVAVVISSINALTLSPALCAIVLKKR 502



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 87/239 (36%), Gaps = 6/239 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +           +S Q        +   Q    ++++    +     ++++  P     
Sbjct: 266 DIARIELGASSYSVSGQYEGQPATVIAVYQAPGENALSVAEGVYAELDRLSQAFPDDIAY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLILDITKTLGFF 711
                      + +   +  +I++ I ++ +           L     + + +  T  F 
Sbjct: 326 EVPFDSTDFVEQSLNDVVSTLILTFILVMSVVFVFLGSARATLIPAVAIPVSLIGTFAFL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G+  N  ++ A++  IG  V+D ++V + +     +    +S  +   K++ +    
Sbjct: 386 LLMGMTLNTISLFALVLAIGIVVDDAIIVVENV--ERVIAEEGLSPPEATAKAMTQITTP 443

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + T++      +P+       G +   FA+ ++  +V+++ +++ ++  +   +   R
Sbjct: 444 VIATTLVLLAVFVPVTFMPGISGQLFSQFAVTISVAVVISSINALTLSPALCAIVLKKR 502



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 77/202 (38%), Gaps = 9/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +     E +                ++L   G V ++++A  +  Y+++      W  
Sbjct: 834  DAIAVLQEEALTALPPGYAYEWTGTAQQQLDAGGTVILVLAAAIIFGYLFLVAQYESWTM 893

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             LG + ++ + +   L    +   + NL     ++ LIG +  + +++ +   +      
Sbjct: 894  PLGILLSVTVALFGALAAVLVTAGDVNLYTQIGMIMLIGLASKNAILIVEFAMEERA--- 950

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S R+   ++  +     + T+++  + V+P+ V    G +   +  I +  G++ A 
Sbjct: 951  NGASIREAALQAARQRFRAVMMTALSFLLGVVPLLVASGAGAASQKAIGIAVFGGMLAAT 1010

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
               + +   + + +   R K  
Sbjct: 1011 VIGVIVVPVLYVLLQSVREKVK 1032


>gi|154149372|ref|YP_001406152.1| AcrB protein [Campylobacter hominis ATCC BAA-381]
 gi|153805381|gb|ABS52388.1| AcrB protein [Campylobacter hominis ATCC BAA-381]
          Length = 1054

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 70/576 (12%), Positives = 162/576 (28%), Gaps = 42/576 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GL+      L    ++ +P+  P               + +    
Sbjct: 9   RPVFACVISIIITLAGLVS-----LRGLPIEEYPNLTPP-------------QINVFASY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  L   L   E +             ++++ F      +     V  
Sbjct: 51  PGADAQTIAETVAAPLEDALNGVEDMIYMQSTSSSAGTMRLSIYFKTGTSPQIAQVNVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   +  L  +  +  +      +  + +            I+ S  +    +D+I   
Sbjct: 111 RVNLASKLLPDNVTRQGISVFERSDSILEVISFYDPSGQMDIIDLSNYLTINVVDEIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P  L +   TT+ +       N        G      + 
Sbjct: 171 NGVGEAFIVGDKKYSMRVWIKPDLLNKYDITTSDVINAISEQNTQYSVGKIGELPENSNS 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + +  +  +              K       I                N+       
Sbjct: 231 AYVFSIRTEGRL-------------VKVSDFENIIIKSLPNGSALKLKDVANVELGSENY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +   ++    +   +   +   +   T +        L           V          
Sbjct: 278 MSNNLINGHYMMPMLVFMQTDGNAIATADAVNKRIEELSKNFPGNLTYNVNYNTTDFVKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLI++++ +   +  ++   +I +++I T A +  +G ++ L ++
Sbjct: 338 SMKEIFQTFIEALVLVLIIMYLFLGNLRSTIIPMIAIPVSIIGTFAGIYAVGFSVNLITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREE--NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             ++L IG+ VD  I+V E +        N SV  + +       + I    +      +
Sbjct: 398 FAMILAIGIVVDDAIIVVENVERNLEENPNISVIEATEKAMEEIMAPIISIVLVLCAVFL 457

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
              F     G   R FA+T+ +S+ IS   A+++  A+    +R    K   I+      
Sbjct: 458 PASFIEGFVGIIQRQFALTLVISVCISGIVALTLTPALCAKFLRRDMAKKPKISQW-FNK 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
           +      I           I     + +I    T  
Sbjct: 517 IFDISTNIYAAGVAKILKHIIPSLIVVAILCFCTWR 552



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 84/216 (38%), Gaps = 12/216 (5%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               + A  + +E + K     +  +   NT        +E+ +  I  +++  I M ++
Sbjct: 301 AIATADAVNKRIEELSKNFPGNLTYNVNYNTTDFVKVSMKEIFQTFIEALVLVLIIMYLF 360

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +         +  +  + + I  T       G   NL  + A++  IG  V+D ++V + 
Sbjct: 361 LG---NLRSTIIPMIAIPVSIIGTFAGIYAVGFSVNLITLFAMILAIGIVVDDAIIVVEN 417

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVI--GSFA 798
           + +N++     IS  +  +K++ E +   +  S+   +  + +    + G   I    FA
Sbjct: 418 VERNLEENPN-ISVIEATEKAMEEIMAPII--SIVLVLCAVFLPASFIEGFVGIIQRQFA 474

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833
           + +   + ++   ++ +   +         AK  +I
Sbjct: 475 LTLVISVCISGIVALTLTPALCAKFLRRDMAKKPKI 510



 Score = 41.6 bits (95), Expect = 0.63,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 76/250 (30%), Gaps = 29/250 (11%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             LE+    D   +        ++    +   S      +  V K+            T  
Sbjct: 803  KLENALGPDTVNRFNGFPAAKIMGDPAEGYTSGQAIDAIAQVFKEEFPNEYTLGWSGTSY 862

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
               + S     KG    I   I + + +  ++ +W      +T +   +   + F  L G
Sbjct: 863  QEVQSSG----KGATAFIFGLIFVYLILAAQYERWLMPAAVMTAVPFSVFGAILFTYLRG 918

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +  ++     ++ LIG    + +++ +     M  +    +  +    +        V T
Sbjct: 919  LTNDIYFQIGLILLIGLGAKNAILIVEFA---MTEHKKGKNIIEASIAAARLRFRPIVMT 975

Query: 776  SMAAFISVLPM-AVWGGSVI-----------GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            S         +   +G   +            S    +  G++ A++ +IF        +
Sbjct: 976  S---------LAFAFGVLPMVISSGAGSASRHSLGTGVIGGMIAASTIAIFFVPLFFYLL 1026

Query: 824  YDWRAKNARI 833
              +    A++
Sbjct: 1027 ETFNNWQAKL 1036


>gi|320105598|ref|YP_004181188.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
 gi|319924119|gb|ADV81194.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
          Length = 1054

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/685 (10%), Positives = 181/685 (26%), Gaps = 38/685 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G +        Q  +   P                          
Sbjct: 10  RPVATALLMVAILLAGGVA-----YFQLPVSALPQVDYPTIQ---------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + ++  +    +     +        +     + ITL F+     +     V   +   
Sbjct: 56  PEVMSSAVTGPLERQFGQIPGLTQMNSTSSGGGSIITLQFSLEESIDVAQQDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     + +      + +L+   +        +           +I        
Sbjct: 116 TSYLPKDLPNPPIYSKVNPADAPILT-LALTSDTLELTKVEDLADTILAQKISQLSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     +   +       N  +            + G    
Sbjct: 175 VSIAGGQKPGVRIQANPMALANYGLSLEDIRTALASANVDQAKGNINGAHQAFTIGANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    + + + +     N    +         + +    +      N             
Sbjct: 235 LLSSADYANVIIAYRNGNAVRLSDVANSLDGAENLFQAAWMGRPAQNGQ----------P 284

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L+A         V          S    
Sbjct: 285 AFTHPAVIVNIQRQPGANIIGVVDRIEALLPKLQATLPASVKVEVLTDRTNTIRASVKDV 344

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V+F+ +   +  ++   ++ L+++ T  ++ LLG TL   S+  + +
Sbjct: 345 QFELLLTIGLVILVIFLFLRSVRATIIPSVAVPLSIVGTFGVMYLLGYTLDNLSLMALTI 404

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I       +S   +   G  +   TI    I+ +   + L F G 
Sbjct: 405 STGFVVDDAIVMVENIDRYLEMGESPLDAALKGSEQIGFTILSLTISLIAVLIPLLFMGD 464

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++IL+S   ++++   M   ++++                    I 
Sbjct: 465 IVGRLFREFAVTLSVTILVSAVVSLTLTPMMASKLLKHTPEDQKGKLYKKSEEWFNAVID 524

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
              +  R+     +    +  +       L +    KG   +             +S   
Sbjct: 525 KYAVGVRWVLRHQTFTLLVT-LATFAATVLLFLYVQKGFFPVQDTGEILAITDAPQSISF 583

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                          ++  V+         A    L   + +I         ++   +  
Sbjct: 584 DAMSQRQQALAAKILEDPDVQSISSYIGIDATNTTLNSGRIQIDLKDRELRSKSASEIIH 643

Query: 660 KISRELIRKGIVGVIISAIAMLIYI 684
           ++   L +          I +  Y+
Sbjct: 644 RLQSNLSQ---------VIGITAYM 659



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 89/259 (34%), Gaps = 13/259 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  +   +      NL          QN          +        A    +    + +
Sbjct: 254 VRLSDVANSLDGAENLFQAAWMGRPAQNGQPAFTHPAVIVNIQRQPGANIIGVVDRIEAL 313

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI------VGVIISAIAMLIYIWIRFKWYFALGA 696
              +  +   + ++         IR  +      + + I  + ++I++++R      +  
Sbjct: 314 LPKLQATLPASVKVEVLTDRTNTIRASVKDVQFELLLTIGLVILVIFLFLR-SVRATIIP 372

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + L I  T G   L G   +  ++ A+    G+ V+D +V+ + +    +      S
Sbjct: 373 SVAVPLSIVGTFGVMYLLGYTLDNLSLMALTISTGFVVDDAIVMVENI---DRYLEMGES 429

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
             D   K   +     +  +++    ++P+   G   G +   FA+ ++  I+V+A  S+
Sbjct: 430 PLDAALKGSEQIGFTILSLTISLIAVLIPLLFMGDIVGRLFREFAVTLSVTILVSAVVSL 489

Query: 814 FIAAPILLFIYDWRAKNAR 832
            +   +   +     ++ +
Sbjct: 490 TLTPMMASKLLKHTPEDQK 508



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 91/253 (35%), Gaps = 7/253 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         V  S     +  + S       +   V L +      +    ++ V+K 
Sbjct: 780  QIYVKSSNGTQVPLSTFTHFEQKNASLVISHQGQFPAVNLSFNLAPGASIGDAVDAVRKA 839

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
              E+    ++              +    V ++ + I + I + + ++ +   +  ++TL
Sbjct: 840  EKELNIPLSVNAQFQGTAASFEASLANEPVLILAALITVYIVLGVLYESYIHPITILSTL 899

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   +    L G + ++ A+   + LIG    + +++ D   +         +  + 
Sbjct: 900  PSAGVGAILALQLTGTDMSVIALIGCILLIGIVKKNAIMMIDFALE--AEREQGKTPEEA 957

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++        + T+MAA +  +P+A+    G  +     I +  G++V+   ++F   
Sbjct: 958  IYQACLLRFRPIMMTTMAALLGGVPLALGSGTGSELRRPLGITIVGGLIVSQVLTLF-TT 1016

Query: 818  PILLFIYDWRAKN 830
            P++   +D   + 
Sbjct: 1017 PVVYLFFDRIGRK 1029


>gi|302342061|ref|YP_003806590.1| acriflavin resistance protein [Desulfarculus baarsii DSM 2075]
 gi|301638674|gb|ADK83996.1| acriflavin resistance protein [Desulfarculus baarsii DSM 2075]
          Length = 1039

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 61/548 (11%), Positives = 164/548 (29%), Gaps = 37/548 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ + +   GL+      + +  +  +P                    V E  
Sbjct: 9   RRPVAATMIIAALVVFGLI-----GISRLGVALYPDVDFPMVT---------VTTVWENA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  + +           Q ++ IT+ F   +  +  A +V   +  
Sbjct: 55  MPEEIDNQITDKLEDAIAGVSGIKHITSQSMQGKSTITVEFELGKDVDVAAQEVRDKVSA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D +  ++         I+       Q I +  + + E +R     +       
Sbjct: 115 KLYDLPDDIETPVINKLDINAQPIIWLAVTGQQAIENLTKLADEQLR---PMLQRIMGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++    +  +L        ++S      +    G     +          
Sbjct: 172 EVRVGGARAKEVHLLLNRQKLAAYGVGVDEVSRAVKSQHVELPGGKIESKDDEF------ 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                + I G   +    N    T +    +   E+G           + +         
Sbjct: 226 ----LIRIMGEFASPEAFNDLIVTWRDGHPVRLRELGRAVSAREETSAVARFTTKDG--- 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A        S ++  +     +    +   +RA         +   +      S + 
Sbjct: 279 ---AEKTVGLGISPRSGANQVEIAQNVRAMLPQIRAMVPEGVKIHIASDSTKFIEDSIAE 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   +  +V+F+ +   +  +++  +I  ++I T A +  LG T+   ++  +V
Sbjct: 336 VREQLFLGGVIAALVIFVFLQNTRTTIISALAIPTSIIATYACMYWLGFTMNNMTMLALV 395

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
             +GL +D  I++ E I     +  +  F +   G       +  + +      + + F 
Sbjct: 396 TAVGLVIDDAIVMVENIFRHRAELGKGPFQAAYEGSHEISFAVVATTLALSGVFLPVAFM 455

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG        FA+T+  +++ S   A+++V  +    +   + +S      +        
Sbjct: 456 GGMVGKFFYEFAVTLAFAVVASTLVALTVVPMLSARFLTVSESRSRLFGVFNDMMNWLSR 515

Query: 538 IAIQFMRA 545
                +  
Sbjct: 516 TYRPMLAW 523



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 94/264 (35%), Gaps = 8/264 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           + ++ G  + +        +   ++  +        +   G          Q   +    
Sbjct: 244 VTWRDGHPVRLRELGRAVSAREETSAVARFTTKDGAEKTVGLGISPRSGANQVEIAQNVR 303

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +L  ++  + E V +    ++         E+  +  +G +I+A+ + +++        
Sbjct: 304 AMLPQIRAMVPEGVKIHIASDSTKFIEDSIAEVREQLFLGGVIAALVIFVFLQNTRTTII 363

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           +  AI T    I  T       G   N   + A++T +G  ++D +V+ + + ++     
Sbjct: 364 SALAIPT---SIIATYACMYWLGFTMNNMTMLALVTAVGLVIDDAIVMVENIFRHRAELG 420

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAA 809
                     +  +E     V T++A     LP+A  GG V      FA+ +AF +V + 
Sbjct: 421 KG--PFQAAYEGSHEISFAVVATTLALSGVFLPVAFMGGMVGKFFYEFAVTLAFAVVAST 478

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ +   +           +R+
Sbjct: 479 LVALTVVPMLSARFLTVSESRSRL 502



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 77/216 (35%), Gaps = 10/216 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-GIVGVI 674
            N L R +     +    ++L     ++  I      +         +       G +   
Sbjct: 794  NRLDRSRSATVYANLNGKLLGDALPEVRAIGQEILPEGYNSKFAGRAESFDETVGYIAFA 853

Query: 675  ISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
                 +L Y+ +      +      +  L L      G   L G  FNL ++  ++ L+G
Sbjct: 854  FMLAILLTYMVLAAQFESFVQPFSIMVGLPLSFIGAFGLLLLLGNTFNLFSMIGLVLLVG 913

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + V++ D      ++    +   + + ++    +   + T+++    V+P+A+   
Sbjct: 914  LATKNGVLLID---YANQMRQAGMGVHEALIEAGATRMRPILMTAVSTIGGVIPVALGLG 970

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G       A+ +A G++ +   ++ +   I  ++ 
Sbjct: 971  EGAESRQPMAVAIAGGMLSSTVLTLLVVPVIYSYMD 1006


>gi|299133647|ref|ZP_07026841.1| acriflavin resistance protein [Afipia sp. 1NLS2]
 gi|298591483|gb|EFI51684.1| acriflavin resistance protein [Afipia sp. 1NLS2]
          Length = 1049

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/584 (11%), Positives = 158/584 (27%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +GL+       P   +   P                     L   
Sbjct: 12  RYPIATSLLMVGVLFVGLVA-----YPSLPIAPLPQVDFPTIQ---------VSASLPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       +T+ F  +R  +  A+ V   +  
Sbjct: 58  SPETMASSVAQPLERQFAQIPGVAQLTSTSSLGSTAVTIQFDLNRNIDGAANDVQAAINA 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L                 + ++   +        IE +  +  Q   Q+       
Sbjct: 118 AGGQLPKSLPSPPTYRKVNPADAPIMI-LSATSETMPLIEVNDAVDSQLAQQLSQITGVA 176

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  + DP++L         +    V             +    +     
Sbjct: 177 QVTIGGQQKPAIRVQIDPAKLVAKGLGLEDVRAQLVQTTVDSPKGNIDGKTRSYTIYAND 236

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                      D+                        +    
Sbjct: 237 QLPASKD--------------------WNDVIIAYRNGGPLRIRDIGQAVSGPEDMKQAA 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   +   +   T++        L     P     +          +   
Sbjct: 277 WANGKRGVFLVVFKQPGANVIETVDKIKAQLPRLEKAIPPAVKIHIMSDRTTTIRAAVED 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ L ++   AL+ + G TL   S+  + 
Sbjct: 337 VQFTLLLTIALVVMVIFIFLRSFWATVIPSVTVPLALLGACALMWMAGYTLDNLSLMALT 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I     K +  + +   G S    TI   +++ +   + L   G
Sbjct: 397 IAVGFVVDDAIVMLENISRYVEKGEDPYRAALKGASEIGFTIVSISVSLVAVLIPLLLMG 456

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ ++I +SM  ++++   M    ++  +              + D +
Sbjct: 457 GIIGRLFREFAVTLAMTIFVSMIVSLTLTPMMASRFLQPHQEHQQHGKFYQWSERMFDGM 516

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              + R     +       +     L    + +    KG     
Sbjct: 517 LYWYERGLNVVMRWRFTTLMVFFATLALSVILFIAIPKGFFPQQ 560



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 96/277 (34%), Gaps = 12/277 (4%)

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
               S   +I      +T   N  +         ++A R      +R   +++   +   
Sbjct: 214 TTVDSPKGNIDGKTRSYTIYANDQLPASKDWNDVIIAYRNGGPLRIRDIGQAVSGPEDMK 273

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-- 666
           Q         V L             ++ +K ++  +           +    +  +   
Sbjct: 274 QAAWANGKRGVFLVVFKQPGANVIETVDKIKAQLPRLEKAIPPAVKIHIMSDRTTTIRAA 333

Query: 667 ---RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
               +  + + I+ + M+I+I++R  ++  +    T+ L +        + G   +  ++
Sbjct: 334 VEDVQFTLLLTIALVVMVIFIFLR-SFWATVIPSVTVPLALLGACALMWMAGYTLDNLSL 392

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            A+   +G+ V+D +V+ + +    +             K  +E     V  S++    +
Sbjct: 393 MALTIAVGFVVDDAIVMLENI---SRYVEKGEDPYRAALKGASEIGFTIVSISVSLVAVL 449

Query: 784 LPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           +P+ + GG +      FA+ +A  I V+   S+ +  
Sbjct: 450 IPLLLMGGIIGRLFREFAVTLAMTIFVSMIVSLTLTP 486



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 99/261 (37%), Gaps = 6/261 (2%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                 D     ++ + +    D   + + +                +   + + +     
Sbjct: 761  PEMQGDLDSLQKIYIKSPTTGDQVPLSTFVRWTTDPVRPLSISHQGQFPAITISFNLAQG 820

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            VA  +  + V+K + E+    T+  +     +  ++ +    + +  + I + + + I +
Sbjct: 821  VALGQATDAVQKAVAELGVPGTLNGSFQGTAQAFQQSLGTIPLLIFAALIVVYLILGILY 880

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + +   +  ++TL       L    +FG +F+L A+  ++ LIG    + +++ D     
Sbjct: 881  ESYIHPITILSTLPSAGVGALATLMIFGYDFSLIALIGIVLLIGIVKKNGIMLVD--FAI 938

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
            +      ++  + I K+        + T+MAA +  +P+ +    G  +       M  G
Sbjct: 939  VAERDEHLTPEEAIHKAALLRFRPIMMTTMAALLGGVPLMLGHGTGSEIRQPLGYAMVGG 998

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++V+   ++F    I L++  
Sbjct: 999  LLVSQVLTLFTTPVIYLYLDR 1019


>gi|305681328|ref|ZP_07404135.1| export membrane protein SecF [Corynebacterium matruchotii ATCC
           14266]
 gi|305659533|gb|EFM49033.1| export membrane protein SecF [Corynebacterium matruchotii ATCC
           14266]
          Length = 384

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 129/314 (41%), Gaps = 11/314 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           +P +   +      I F+  R      ++   +  +  +   G N GIDF+GG ++ + A
Sbjct: 3   SPSTATQIFTGDGNIDFVDKRRTAYWATLAIIVVCLLGITLRGFNLGIDFEGGTKMNMPA 62

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                  V  +  ++  +     Q        ++ +  +           + +      +
Sbjct: 63  ANLETSQVEETFTKATGVDPEQVQIVGSGDTRILEINSKRLTQGQIDAARQALFDAYKPV 122

Query: 646 V----PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                          V       +  + ++ + +  IA   YI IR +   A+ AI  L 
Sbjct: 123 NSAGQQTPDAIGDSTVSESWGSTITNRMLMSMGVFLIAAFAYIAIRLQREMAVAAILALF 182

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRD 759
           +D+    G +A+ G E     V  +LT++ +S+ D V+V+D++R+N   Y     +++ +
Sbjct: 183 VDLITITGLYAIAGFEVTPATVIGLLTVLAFSLYDTVIVFDKVRENTAGYLGNKRMTYGE 242

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIF 814
             + +IN+T+ RS+ T++ + + +L +      + G   +   A+    G++    SSIF
Sbjct: 243 HANLAINQTVMRSISTTVISVLPILALMIVAVWLMGVGTLKDLALIQLIGVIWGTVSSIF 302

Query: 815 IAAPILLFIYDWRA 828
           +A P L+ I +   
Sbjct: 303 LATPFLVSIKNRTK 316


>gi|91782928|ref|YP_558134.1| RND family hydrophobe/amphiphile efflux pump [Burkholderia
           xenovorans LB400]
 gi|91686882|gb|ABE30082.1| hydrophobe/amphiphile efflux pump, RND family [Burkholderia
           xenovorans LB400]
          Length = 1088

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 69/579 (11%), Positives = 158/579 (27%), Gaps = 33/579 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +      L +     +P  +P + +                  
Sbjct: 10  RPIFAAVLSVVIVLAGFIA-----LTKLPTAEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                 T++F      +     V   +  
Sbjct: 56  PKVIAETVASPIEEQINGVENMLYMQSQANSDGAMTTTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        +                    +    D++       
Sbjct: 116 AMPRLPEDVQRLGVTTIKSSPTLTMGVNLVSPNGRYDLTYLRNYALINIKDRLAQVPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP+++ +   T   +       N      + G   +  +   Q 
Sbjct: 176 EVAMWGAGDYSMRVWLDPTKVARQNLTATDVVKAIREQNVQVAAGIVGGAPMTTNVPMQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 +    A      
Sbjct: 236 SVNAQGRLKTEE-------------EFRNIILKTSPDGAVTHLSDVARVEMGAAEYALRA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L      Q I   +   +          + A L+          +          S   
Sbjct: 283 SLDGKPGVQLIIFQQPNANSLQISTDVRRITAELQKDMPEGVEAKIVYDPTQFVRESIDA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  L+   ++ ++++ T +L+   G T+   S+ G+V
Sbjct: 343 VVHTLFEAIVLVVIVVIVFLQTWRASLIPLLAVPVSIVGTFSLMLAFGFTINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIASGLTPLEASYEAMREVSGPIIAIALTLVAVFVPLAFMS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK--SIDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS F ++++  A+   +++        +            +
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLKDHHAPEDWLTRVMDRILGPFFN 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
                F R                  ++  +G+  G  F
Sbjct: 523 VFNKVFHRGSEAYGKGVGGIINRKAAMMVVYGVLLGGTF 561



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                    IS + + + +   ++     L  +  + + I   L    L   + N+     
Sbjct: 878  NAAFWVFPISVLLVFLVLAAMYESLTLPLAILLIVPMSILSALFGVWLTRGDNNIFTQIG 937

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G S  + +++ +  R+   L     S      ++    L   + TS+A  + V+P
Sbjct: 938  LMVLVGLSAKNAILIVEFARE---LEMQGRSIVQAAIEACRLRLRPILMTSIAFIMGVIP 994

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + +    G  +  +  I + FG++      + +     + +  
Sbjct: 995  LVISTGAGSEMRRAMGIAVFFGMLGVTLFGLILTPVFYVLLRK 1037



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 55/127 (43%), Gaps = 6/127 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  +L  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASLIPLLAVPVSIVGTFSLMLAFGFTINALSLFGMVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
              + ++  +   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 425 ---SGLTPLEASYEAMREVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAISTV 481

Query: 807 VAASSSI 813
           ++A +S+
Sbjct: 482 ISAFNSL 488


>gi|154244276|ref|YP_001415234.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Xanthobacter
           autotrophicus Py2]
 gi|154158361|gb|ABS65577.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Xanthobacter autotrophicus Py2]
          Length = 1079

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 70/697 (10%), Positives = 189/697 (27%), Gaps = 50/697 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      +    +  +P  +P   +                  
Sbjct: 10  RPIFAGVLSVLIFLAGLIS-----MRAMPISEYPEVVPPQVV---------VRATYAGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVSTPLEEAINGVEDMLYMSSQATTDGLMTLTVTFKLGTDPDKAQQLVQNRISQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   E   
Sbjct: 116 AEPRLPEEVRRLGVTTVKSSPDLTMVVHLISPNNRYDTTYLRNYAVLNVKDRLARIEGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   + A +       N      + G          Q 
Sbjct: 176 QVQLFGAGDYSMRIWLDPQKVAEHGLSAADVVREIRAQNVQAAAGVVGASPGAPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++ +              +    +                 +    +      
Sbjct: 236 SINAQGRLANVE-------------EFGNIVVKSGTNGEIVLLKDVARVELGASDYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +    +   ++A         +          S   
Sbjct: 283 LLNNTQAVAVPIFQAPGSNAIRIADEVRRVMEEIKANMPEGVDYSIVYDTTQFVRASIDA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T A++ L G ++   ++ G+V
Sbjct: 343 VVHTLLEAVLLVVLVVIVFLQTWRASIIPLLAVPVSIVGTFAVMHLFGFSINALTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEGGLSPREATYKAMQEVSGPIIAIALVLIAVFVPLAFIT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRA--------------MMIFIIRYKKMKSID 524
              G   + FA+T+ +S +IS   ++++  A              ++  I+         
Sbjct: 463 GLTGQFYKQFALTIAISTVISAINSLTLSPALSALLLKGHDAPKDLLTRIMDVSFGWFFK 522

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               +          +         + + +   + ++  +    +  G       Q  V 
Sbjct: 523 GFNKAFVKGSNAYGGVVKRTIAHKVIMLGLYLVLVAMTAVLFRAVPPGFVPGQDKQYLVG 582

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +  D + +    E ++         +G K+ +             +            
Sbjct: 583 FAQLPDGATLDRTEEVIRHMSDIALKQEGVKSAIAFPGLSINGFTNSSNS----GIVFVG 638

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
           +      ++  + G  I+  L +K    +  + IAM 
Sbjct: 639 LDEFEARKSPALSGNAIALALNQK-FASIPDAMIAMF 674



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 80/256 (31%), Gaps = 12/256 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
             +  G +++       + LS +     +         N     +             AQ 
Sbjct: 790  PEDVGTLKVRSATGEMIQLSALLKVRSAAGPERAMRYNGFLSADVNGGAAPGFSSGEAQA 849

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             V  +  + + +                         +    ++   + + +  +++   
Sbjct: 850  AVERIAAETLPKGFSF-----EWTELTYQDILAGNSAVWVFPLAIFLVFLVLAAQYESLV 904

Query: 693  ALGAITTLILD-ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
               AI  ++   +   +    L G + N+     ++ L+G S  + +++ +  R+   L 
Sbjct: 905  LPLAIIMIVPTGLFAAMTGVWLAGGDNNVFTQIGLVVLVGLSAKNAILIVEFARE---LE 961

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                +      ++    L   + TS+A  + V+P+      G  +  +    +  G++  
Sbjct: 962  FAGRTPVQAALEASRLRLRPILMTSLAFIMGVVPLVTSIGAGAEMRNAMGTAVFAGMIGV 1021

Query: 809  ASSSIFIAAPILLFIY 824
             +  IF+     + + 
Sbjct: 1022 TAFGIFLTPVFYVMLR 1037



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     LFG   N   +  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSIVGTFAVMHLFGFSINALTLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
                +S R+   K++ E  G  +       I+V     +     G     FA+ +A   
Sbjct: 425 G---GLSPREATYKAMQEVSGPII-AIALVLIAVFVPLAFITGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAINSL 488


>gi|221197905|ref|ZP_03570951.1| acriflavine resistance protein B [Burkholderia multivorans CGD2M]
 gi|221204537|ref|ZP_03577554.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia multivorans CGD2]
 gi|221175394|gb|EEE07824.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia multivorans CGD2]
 gi|221181837|gb|EEE14238.1| acriflavine resistance protein B [Burkholderia multivorans CGD2M]
          Length = 1045

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 70/615 (11%), Positives = 169/615 (27%), Gaps = 41/615 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G             + ++P   P              +       
Sbjct: 8   RPVFAWVIALFIMLGGAFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSATSSAGMASLYLTFRQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      +   ++     D      ++         +  +   +   +
Sbjct: 114 EARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTGVQLGEYASANVVQALRRVDGVGR 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKLAGHGLTASDIAAAVRAHNARVTVGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +      +      I    +       
Sbjct: 233 VFADAPL-------------KTPADFGAIALRSQADGAALYLRDVARIEFGGSDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L A   P     +          S +  
Sbjct: 280 VNGKVAVGMGIKLAPGSNAVATEKRIRAAMDELSAYFPPGVKYQIPYETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+    + + +  T   +   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGAMYAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  + + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEERLAPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+++ +SI  S F A+S+  A+   +          +       +     
Sbjct: 460 GAVGNIYRQFALSLAVSIAFSAFLALSLTPALCATLLKPVDDGHHDKRGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   W V   +L ++ ++ L          + +G   + V+  +  
Sbjct: 520 STQRYATRVGAMLNKPLRWLVVYGVLTAVAALMLTRLPSAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIG 604
            L+    ++  ++  
Sbjct: 580 PLAETMQSVREVESY 594



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 72/203 (35%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    ++ +       V       T         +++   I   ++  + M +++ 
Sbjct: 300 ATEKRIRAAMDELSAYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NLRATLIPTLVVPVALAGTFGAMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    ++  D   K++ +  G  V  ++      +PMA +GG+V      FA+ +A
Sbjct: 416 -ERLMVEERLAPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIAFSAFLALSLTPALCATLLK 497



 Score = 41.2 bits (94), Expect = 0.66,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 72/210 (34%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           I  I              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAPGHSSGEAMAAIERIAATLPAGIGHAWSGQSFEERLSGAQAPLLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W   L  +  + L +   +    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPLAVMLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ +  +  +      +S  +   ++    L   V TS+A  + VLP+A   G+  G+  
Sbjct: 938  LIVEVAKDLLAQ---RMSLAEAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQT 994

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +  G++ A   ++F+     + +  
Sbjct: 995  AIGTGVLGGVIAATVLAVFLVPLFFVVVGR 1024


>gi|85710952|ref|ZP_01042013.1| RND multidrug efflux transporter MexF [Idiomarina baltica OS145]
 gi|85695356|gb|EAQ33293.1| RND multidrug efflux transporter MexF [Idiomarina baltica OS145]
          Length = 1058

 Score =  171 bits (432), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/508 (12%), Positives = 150/508 (29%), Gaps = 37/508 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +    G +        Q  +  +P   P               +V+  +
Sbjct: 8   RRPIFAAVISLLFFITGAIAVW-----QLPITEYPEVAPPT-------------VVVTAN 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   + +  +  L   +   E +   S +   +    +T++FA          +V 
Sbjct: 50  YPGANPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTVTFAIGTDVNLAQTQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++    +L    ++  +VT       I++            +  S        D++  
Sbjct: 110 SRVERAKPRLPQVVQRLGVVTEKSSPNEIMVVNLTSPDDRYDMLYLSNYANLNIKDELAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    DP+++  L  + A+++      N        G +   D+
Sbjct: 170 IEGVGAVRLFGAGEYSMRVWLDPNKVSALGLSPAQITEAIREQNQQAAAGSLGSQPSGDA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           D  Q L+  K  ++ +              +    I                 +    + 
Sbjct: 230 D-FQLLINVKGRLTDVE-------------EFEDIIIKVGENGEISRLKDVARVELGAST 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L             +  +     +      A L  G        +         
Sbjct: 276 YALRSLLNNKDAVALPIFQASGSNAIQISDDVRSKMAELSKGFPDGLTYDIVYDTTVFVR 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           GS      T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S
Sbjct: 336 GSIDAVVKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +     +  S   +           I  + +      + 
Sbjct: 396 LFGLVLAIGIVVDDAIVVVENVERNISEGLSPIAATQKAMKEVTGPIVATTLVLAAVFIP 455

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAI 504
             F  G   + +        + +  +AI
Sbjct: 456 TAFMSGLTGQFYKQFALTITISTFISAI 483



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/386 (10%), Positives = 109/386 (28%), Gaps = 10/386 (2%)

Query: 454  MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
                 AYS IF       + T+  F         +       + + +         +   
Sbjct: 663  AAIDEAYSAIFPPPPVQGLGTIGGFRLQIQDRANYGYEELYKVNMEVMQKARATPELTGV 722

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC---LLFTHGLN 570
               Y+         + R       +++  +         S+  +  +            +
Sbjct: 723  FSSYQVNVPQLDIDVDRTKAKQQDVSLDEVFQTLQAYMGSVYVNDFNRFGRTYQVNMQAD 782

Query: 571  YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                        +         V   +  ++       +           +   P    +
Sbjct: 783  EQFRQTPEQISQLKVRNGSGEMVPVGSFMNITNTAGPDRVMHYNGFTTAEINGGPAPGYS 842

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
                   ++K + E +P         +  +          +  ++  +  ++        
Sbjct: 843  TGEAQAAIEKILAETLPNGMTYEWTELTYQQILAGNAGMFIYPLVILLVFMVLAAQYESL 902

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + + +   L    ++G + N+     ++ L+G +  + +++ +  ++   L
Sbjct: 903  TLPLAIILIIPMTLLSALSGVLIYGGDNNILTQIGLIVLVGLATKNAILIVEFAKE---L 959

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                ++  D I ++    L   + TS+A  + V+PM V+           M   +     
Sbjct: 960  QDHGMTTMDAILEAGRLRLRPILMTSIAFIMGVVPM-VFSSGAGAEMRQAMGVAVFSGMI 1018

Query: 811  -SSIF--IAAPILLFIYDWRAKNARI 833
              +IF  I  P+  ++   R +   +
Sbjct: 1019 GVTIFGLILTPLFYYMLAKRGEKKAL 1044



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/126 (20%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 363 WRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIS 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV 806
                +S      K++ E  G  V T++      +P A   G        FA+     I 
Sbjct: 423 E---GLSPIAATQKAMKEVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALT----IT 475

Query: 807 VAASSS 812
           ++   S
Sbjct: 476 ISTFIS 481


>gi|327190972|gb|EGE58026.1| multidrug-efflux system, acriflavin resistance protein [Rhizobium
           etli CNPAF512]
          Length = 1066

 Score =  171 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 146/544 (26%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      L    +  +P  +P + +                  
Sbjct: 10  RPVFAGVLSVLIVVAGLI-----GLRALPISEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PSVIAETVATPLEEQINGVEGMLYMSSQATSDGVLNVTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T       I++     D                  D++       
Sbjct: 116 AEPRLPAEVRALGITTVKSSPDFIMVVNLVSDGDSHDITYLRNYATLNVKDRLARIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +  +     + +S      N      + G    +     Q 
Sbjct: 176 QVQVFGAGDYSMRVWIDPQKAAEHDLAASDVSNAISSQNVQAAAGIIGASPSQPGVDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    A      
Sbjct: 236 NVNAQGRL-------------RTPEEFGNIIVKTGASGEITRLRDVARIELGAADYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 283 LLDGKPAVAVAVLQAPGSNAIEIADNVRATMDQLQLAMPEGVKYEIVYDTTKFVRASIEK 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G ++   S+ G+V
Sbjct: 343 VIDTLLEAIALVVLVVILFLQTWRASIIPLIAVPVSIIGTFAVMYVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEHGLSPRAATYKAMKEVSGPIVAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S +IS F ++++  A+   +++        +             
Sbjct: 463 GLSGQFYRQFALTIAISTVISAFNSLTLSPALAALLLKGHHAPKDWLTRFMDAIFGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 GFNR 526



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAIIMIVPMGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     + R+   ++    L   + TSMA  + V+P+ V    G  +  +  + +  G+
Sbjct: 960  -LEFEGRTPREAAVEASRLRLRPILMTSMAFIMGVVPLVVSTGAGSEMRAAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      IF+     + +  
Sbjct: 1019 IGVTFFGIFMTPVFYVLLRR 1038



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---IAVPVSIIGTFAVMYVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI---E 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R    K++ E  G  V  ++      +P+A      G     FA+ +A   V++A
Sbjct: 425 HGLSPRAATYKAMKEVSGPIVAIALVLVAVFVPLAFISGLSGQFYRQFALTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 FNS 487


>gi|284051231|ref|ZP_06381441.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Arthrospira
           platensis str. Paraca]
          Length = 1070

 Score =  171 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 62/582 (10%), Positives = 154/582 (26%), Gaps = 36/582 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G++       P   + + P  +   +I++       + + +  D
Sbjct: 10  KRPVLTTVCSILIVLVGVISI-----PLLPISQLPQ-LANTQINV-------TAVNIGAD 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
            +      +    +   + +        +        ++++F  +  ++     V   + 
Sbjct: 57  AET-TETTVTSILEREINGVDNMRYISSNTANNGVANVSVAFPVNVDRDIAQVNVNNRVS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-----VISHAIEQSMEIIRQRIDQIG 175
              S L    ++  +         +++     D       I   +  S  +    +D+I 
Sbjct: 116 QAASSLPDVVQQVGITVEASSPSILLVLGFYSDTDQNNQPIYDDVFISNFLDLNVLDEIT 175

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            +               +    +P ++         +       N        G      
Sbjct: 176 RAPGVGSVTILGERRYAMRIWLNPQKMAARGLVAQDVVAALRQQNIQVGAGKIGQAPTPP 235

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
               +  +  +  +                 +    +                 +     
Sbjct: 236 DQRFEIPLRAQGRL-------------RDVSEFEELVVAVGNDGTLIRITDVGRVELGAQ 282

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                               +   +   T E        L A   P     +        
Sbjct: 283 DYNLDATYNNQAAVGMAVYQRPGSNALETAEAVKSKMQELSASFPPGVRYAIPYDTTLFV 342

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV++V+F+ +   +  L+   +I + +I ++A L  +G  L   
Sbjct: 343 QASLQEVVITLLQTITLVILVIFVFLQDWRTTLIPTIAIPVALIGSMAGLKAMGFELNTL 402

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIAT 474
           ++ G  L  GL VD  I++ E +  +  +      +          +TI  S +   +  
Sbjct: 403 TLFGCTLAAGLVVDDAIVIVEAVSSKIAQGMKPRQAALDAMEELTGATISTSLVLLAVFI 462

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V FF G      + F++T+  +I+ S F A+S    M   ++R  K     +      F
Sbjct: 463 PVAFFPGTTGIIFQQFSLTITFAIICSTFNALSFSPTMAGVLLRPAKKTKGPLGWFFEKF 522

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
                            +       +          +     
Sbjct: 523 NQGFGFIQNQYAKLIRFLVRINTLVMGIFIGGLVLTVLMYGW 564



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 74/244 (30%), Gaps = 6/244 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R  L +      +  N        V  +           V   +++      P   
Sbjct: 272 TDVGRVELGAQDYNLDATYNNQAAVGMAVYQRPGSNALETAEAVKSKMQELSASFPPGVR 331

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                     +   L    I  +    + +L+       W   L     + + +  ++  
Sbjct: 332 YAIPYDTTLFVQASLQEVVITLLQTITLVILVIFVFLQDWRTTLIPTIAIPVALIGSMAG 391

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G E N   +       G  V+D +V+ + +          +  R     ++ E  G
Sbjct: 392 LKAMGFELNTLTLFGCTLAAGLVVDDAIVIVEAV---SSKIAQGMKPRQAALDAMEELTG 448

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++ TS+      +P+A + G+       F++ + F I+ +  +++  +  +   +    
Sbjct: 449 ATISTSLVLLAVFIPVAFFPGTTGIIFQQFSLTITFAIICSTFNALSFSPTMAGVLLRPA 508

Query: 828 AKNA 831
            K  
Sbjct: 509 KKTK 512



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 62/180 (34%), Gaps = 18/180 (10%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAV--- 723
              IV   +  +   + +  +++ Y   L  +  + L +   L              +   
Sbjct: 879  AAIVIFGLGFVIAFLVLSAQYESYIDPLIIMLAVPLAVLGALAAIWFRSNVLMAGGIWPV 938

Query: 724  --------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
                     A++ LIG +  + +++ +      +L    +S       +  +       T
Sbjct: 939  VNNDVYAQVALVMLIGLASKNSILIVEFAN---QLRDKGLSINKAAALAAEQRFRPIQMT 995

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++++ +   P+ +    G S   S    +  G++V    S+ I   + + I +  A+  +
Sbjct: 996  AISSLVGFWPLVIASGAGASSRWSLGTAIFGGMLVGTLLSLLITPNLYIAIKNLEARFLK 1055


>gi|254796781|ref|YP_003081618.1| protein-export membrane protein SecF [Neorickettsia risticii str.
           Illinois]
 gi|254590019|gb|ACT69381.1| protein-export membrane protein SecF [Neorickettsia risticii str.
           Illinois]
          Length = 298

 Score =  171 bits (431), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 150/284 (52%), Gaps = 10/284 (3%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           +  F + +     IS    + +   L T GL++GIDF GG+ L V + + +D++ +R + 
Sbjct: 13  SFDFAKYKKAAFLISSTLLVVAFVFLETKGLSFGIDFTGGMVLEVYSEKSIDITQLRDDF 72

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
              Q    +  ++  ++  ++            T++   +K        +  +      G
Sbjct: 73  SKNQSLPTASIHYLEDQKHIMIKVRSQDFQDGLTKMKSFLKPYNFRYDKIDCV------G 126

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P+IS+ LI +  + +I S +AM +Y++ RF   FAL  + T + DI   +  ++ + +EF
Sbjct: 127 PQISKSLIYRSGLAIIFSVLAMFVYLFFRFTPAFALSGVLTTLHDIILLVCLYSAYELEF 186

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           N ++VAAVL ++GYS+ND VV++D++R+N+ +     +    I+ S+N TL R+V TS+ 
Sbjct: 187 NTSSVAAVLAIVGYSINDSVVIFDKLRENIGIK----NIAKRINVSVNTTLSRTVLTSVT 242

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             +++ P+A      I  F++ +  GI +   SSIFIAAP+ L 
Sbjct: 243 TMLAIAPVAFLSSGDIRVFSLIILAGIAIGTYSSIFIAAPLALL 286


>gi|227495486|ref|ZP_03925802.1| preprotein translocase subunit SecD [Actinomyces coleocanis DSM
           15436]
 gi|226831033|gb|EEH63416.1| preprotein translocase subunit SecD [Actinomyces coleocanis DSM
           15436]
          Length = 598

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 127/543 (23%), Positives = 221/543 (40%), Gaps = 45/543 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++NP   ++   +  +  +IAL     +++    P         L LDL+GG+ L+L   
Sbjct: 5   KSNPVKPLVMLTVLIVAAVIALTVGTVRNLTTPVPE--------LALDLQGGTQLILTPT 56

Query: 62  EDD------FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
             +           L    D +R  +   G+    +     +  +     +  E   + V
Sbjct: 57  PREGEENVEITENDLSQAIDIIRQRVDASGVAEAEITSQGGRNIVVALPGQPSEETLNLV 116

Query: 116 TL-FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
               +      L       L       +      +           EQ+ME      D  
Sbjct: 117 RSSAVMRFRPLLQAGAPVPL-----AAQAPAEKKEGEEAAPAKTVEEQAMEAADVDKDGK 171

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
              ES      +  +            L         ++                     
Sbjct: 172 LSEESAKTPENNSDLAWVTEKALY-DYLVTDCTKPESLAHGSTDD-------PAKPLVAC 223

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFD-----PKTHKPVVDISFDEMGARRF------- 282
           + DG++  +   V++ G  L  A A          T +  V + F+  GA +F       
Sbjct: 224 NIDGHEKYLLGPVDVEGTDLKAAVAQMGTNSSGQPTGQWEVGLQFNSAGAEKFKAVSERL 283

Query: 283 -FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                 D +    A VLDG V+TAP +N  I  G+A ISGNFT+E+A  LA  L+ GSLP
Sbjct: 284 FGFRGVDPVRNRFASVLDGNVVTAPSMNSVIAGGQASISGNFTVESARALANQLQFGSLP 343

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           +   +  E ++ A LGSD + KG  A + GL L++L+++  Y    L+A  S+ +  + T
Sbjct: 344 LNFTVETEEHISATLGSDHLEKGLWAGIIGLALVMLYLLFQYRGLALLAGGSLVMAAVFT 403

Query: 402 LALLSLLGA----TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
              ++LL       L+L  +AG+++ +G+  DS I+  ER+R+E R   ++  +++ G+ 
Sbjct: 404 YLSIALLSWLMGYRLSLAGVAGLIISVGITADSFIVYFERVRDEVRSGVNLDSAVNDGWV 463

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           RA  TI  S++  L+A  VL+F   G V+GFA T+GL+ ++ +   +     +M  ++R 
Sbjct: 464 RARRTIIVSDMVNLLAAAVLYFLAVGGVQGFAFTLGLTTIVDLIVILWFTHPIMELLVRT 523

Query: 518 KKM 520
           K  
Sbjct: 524 KFF 526



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 68/183 (37%), Gaps = 6/183 (3%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK---WYFALGAITTLILDI 704
             T++  E +   +  + + KG+   II    +++Y+  +++          +   +   
Sbjct: 345 NFTVETEEHISATLGSDHLEKGLWAGIIGLALVMLYLLFQYRGLALLAGGSLVMAAVFTY 404

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
                   L G   +L  VA ++  +G + +  +V ++R+R  ++   + ++    ++  
Sbjct: 405 LSIALLSWLMGYRLSLAGVAGLIISVGITADSFIVYFERVRDEVR---SGVNLDSAVNDG 461

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                   + + M   ++   +       +  FA  +    +V     ++   PI+  + 
Sbjct: 462 WVRARRTIIVSDMVNLLAAAVLYFLAVGGVQGFAFTLGLTTIVDLIVILWFTHPIMELLV 521

Query: 825 DWR 827
             +
Sbjct: 522 RTK 524


>gi|111115486|ref|YP_710104.1| preprotein translocase subunit SecF [Borrelia afzelii PKo]
 gi|216263595|ref|ZP_03435590.1| protein-export membrane protein SecF [Borrelia afzelii ACA-1]
 gi|110890760|gb|ABH01928.1| protein-export membrane protein [Borrelia afzelii PKo]
 gi|215980439|gb|EEC21260.1| protein-export membrane protein SecF [Borrelia afzelii ACA-1]
          Length = 299

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 136/300 (45%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +   I      +    V + +          +  G N+GIDF   + + +   +      
Sbjct: 1   MQRVINFLKYGSNVLIVSVILTLIGLIYTFFYHGGYNWGIDFSPRVNINLSIEKSDIKEN 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
               + S     +   +     N            V        V+K I + +  +   N
Sbjct: 61  EIKRIFSPLYKALEVNSIFSPNNNKSEFSIMVKSDVIDYAFKTEVQKTIMDELKKTFNVN 120

Query: 654 TEI-----VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            E+     +    S  L  K I  V+ +   +LIYI +RFK  +A+ +I +   DI   +
Sbjct: 121 IEVLDSYFIDSSFSSTLRIKSIFLVLGTFALILIYITLRFKLSYAIASILSTFHDIFFIV 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F   F IE N   + A+LT+IGYS+ND ++++DR+R N++   T  +F ++++ SI++T
Sbjct: 181 AFLGAFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVRRL-TDNTFLNVLNISISQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R+V TS+  F++V  + V+    I  F++    G++V   SS+FIA+PILL +Y    
Sbjct: 240 LSRTVLTSVTTFVAVFSIYVFTEGPIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK 299


>gi|317013355|gb|ADU83963.1| preprotein translocase subunit SecD [Helicobacter pylori
           Lithuania75]
          Length = 526

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 156/545 (28%), Positives = 275/545 (50%), Gaps = 31/545 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFIFALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDKDEAKKLDALL----- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L +       +       S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 106 -----LELQGHSQFEIKKEAGFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGREEISVQLPGIKTLEEERRAKDLISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A++ G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALIGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFLI 534
                
Sbjct: 521 VKNKR 525



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ +I   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALIGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|301308764|ref|ZP_07214716.1| HAE1 efflux family protein [Bacteroides sp. 20_3]
 gi|300833288|gb|EFK63906.1| HAE1 efflux family protein [Bacteroides sp. 20_3]
          Length = 1052

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/554 (11%), Positives = 160/554 (28%), Gaps = 33/554 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GLL           + +FP  +P +                   
Sbjct: 7   RRPILSGVISVVIVFLGLLAI-----NSLPITQFPDIVPPSVT---------VTARYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D +   +    +   + +                +T + F      +  +  V   + 
Sbjct: 53  NADVMAKTVATPLERAINGVPGMTYMTSVCTNDGMSLTTIYFKVGTDPDVASVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  ++T  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVITEKEVNSMLMYLNIMSSDSTHTEKFVYNFADINILRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P+RL     +  +++      N        G+   +     Q
Sbjct: 173 GFVEIMGSRDYAMRVWLNPNRLAAYNMSPQEVTEAIRSQNIEAAPGKTGISSDKIPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++              +       +    +                 I          
Sbjct: 233 YVLQ-------------YSGKFSTPEEYGEIVLKALPDGSVLRLKDVATIEFDSEDYNMI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA-GSLPIKLNIVEERNVGADLGSD 359
            +         +   +   +    I+        L+     P     +          S 
Sbjct: 280 SMTDGKPSASIMIKQRPGSNAREVIQQIKAKMEELKETTFAPGMEYNISYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S+   T      LV IV+++ +   +  L+   ++ +++I T   + +LG ++ + ++  
Sbjct: 340 SVVLKTLLEAFILVFIVVYLFLQDFRSTLIPAIAVPVSLIGTFFFMQMLGFSINMLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IG+ VD+ I+V E +  + + +      +           I    +      + + 
Sbjct: 400 LVLAIGIVVDNAIVVVEAVHVKMHNEKLPPLKATKKAIGEIGGAIIAITLVMSAVFIPVG 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F  G      R F++T+ ++I+IS   A+++  A+   +++           L   F   
Sbjct: 460 FMDGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLKPVSHSKKAKKGLLTRFFEG 519

Query: 536 DCIAIQFMRARFWG 549
                 F+  R+  
Sbjct: 520 FNRRYDFLERRYRL 533



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 90/243 (37%), Gaps = 9/243 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +S     IS  +     + +++ +          ++   +++            N   
Sbjct: 270 EFDSEDYNMISMTDGKPSASIMIKQRPGSNAREVIQQIKAKMEELKETTFAPGMEYNISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I   +  ++ + I + I +++    +   L     + + +  T  F  + G
Sbjct: 330 DVSRFLDASISVVLKTLLEAFILVFIVVYLFLQDFRSTLIPAIAVPVSLIGTFFFMQMLG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+  + A++  IG  V++ +VV + +   +K++   +       K+I E  G  +  
Sbjct: 390 FSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHNEKLPPLKATKKAIGEIGGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD---WRAK 829
           ++      +P+    G+V      F++ +A  IV++  +++ ++  +   +        K
Sbjct: 448 TLVMSAVFIPVGFMDGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLKPVSHSKK 507

Query: 830 NAR 832
             +
Sbjct: 508 AKK 510



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 73/254 (28%), Gaps = 15/254 (5%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         +    +  +      +  L       G++       E +         + 
Sbjct: 793  NKEGNMVPYSNFMTMERVYGPSQITRYNLFTSAMITGEAAPGVSSGEALAAVEEIAAEVL 852

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                          E    G   VI +     +Y+ +          L  I +L   +  
Sbjct: 853  PRGYDTEWSGVAKEEKESGGQTLVIFAICLAFVYLLLAAQYESLLLPLPVILSLPAGVFG 912

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSI 765
            +     + G+E N+ A  A++ LIG    + +++     +         +       +  
Sbjct: 913  SFFLLYVVGLENNIYAQVALVMLIGLLGKNAILII----EVANQCRKEGVCVMGAAIQGA 968

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS A    ++P+    G   +   S     A G+++     IF+   + + 
Sbjct: 969  TSRLRPILMTSFAFISGLIPLTIASGAGALGNRSIGTAAAGGMLIGTFVGIFLIPGLYVI 1028

Query: 823  IYD----WRAKNAR 832
                   ++ +  +
Sbjct: 1029 FESLATYFKKRKEK 1042


>gi|84569895|gb|ABC59231.1| CmeB [Campylobacter coli]
          Length = 1040

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 77/682 (11%), Positives = 180/682 (26%), Gaps = 36/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      L    ++++PS  P                     +
Sbjct: 9   RPVFASVVAIIISLAGAI-----GLVNLPIEQYPSLTPPTVK---------VSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
              +   +    ++  +          +          + F      +     V   +  
Sbjct: 55  AQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPDQATIDVNNRISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    KK  +        ++             A++    I    +D++       
Sbjct: 115 ATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L     P  L +   T   +       N        G   +       Y
Sbjct: 175 DANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                ++           
Sbjct: 235 SITMQGRL-------------QSPSEFENIILRTNDDGSFLRLKDVADVEIGSQQYSSQG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        I + ++  +   T E        L           +        + S   
Sbjct: 282 RLNGNDAVPIIINLQSGANALHTAELVQAKMQELSKNFPKGLTYNIPYDTTKFVIESIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  L+   ++ ++++ T A L +LG ++ L ++  ++
Sbjct: 342 VIKTFIEALVLVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSINLLTLFALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+V E I     +N+       ++      +   I    +   +   V F
Sbjct: 402 LAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVLVLCAVFIPVSF 461

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  G   R FA+T+ +S+ IS F A+++  ++    +R  +            F    
Sbjct: 462 ISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGDPFKFVKKFNDFFDWS 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSV 593
                   A      I  +   C +     +        +  +    L +        S 
Sbjct: 522 TSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLNKAVPSSLVPEEDQGLMISIINLPSASA 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +  +          +G K+ +  + +    S  +     M            +   
Sbjct: 582 LHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAAMFIGLKDWKDRNVSADE 641

Query: 654 TEIVGPKISRELIRKGIVGVII 675
             +   K          + + +
Sbjct: 642 IAMELNKKFAFDRNASSIFIGL 663



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 91/244 (37%), Gaps = 13/244 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q      +    +   ++       +++    +++   +++++  P     
Sbjct: 266 DVADVEIGSQQYSSQGRLNGNDAVPIIINLQSGANALHTAELVQAKMQELSKNFPKGLTY 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N      K   E I++ I   I + + ++I +++  K +   L  +  + + +  T    
Sbjct: 326 NIPYDTTKFVIESIKEVIKTFIEALVLVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + + + +      IS +D   +++ E    
Sbjct: 386 YVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQ-ISVKDAAIQAMQEVSSP 444

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + +       + G +   FA+ +A  + ++   ++ +   +     
Sbjct: 445 VI----SIVLVLCAVFIPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFL 500

Query: 825 DWRA 828
               
Sbjct: 501 RRNE 504



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 83/255 (32%), Gaps = 15/255 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L    +   S    D+   N         +         A   + ++ K+ + +  
Sbjct: 791  KMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDY 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
             ++   +                     +  + + + +  ++ +W   L  +T +   + 
Sbjct: 851  SIAWSGSAYQEVSSKG-----TASYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVF 905

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G   ++     +L LIG S  + +++ +   +    +       D   ++ 
Sbjct: 906  GSFLLVYLRGFTNDIYFQTGLLLLIGLSAKNAILIVEFAMEE--RFKKGKKIFDAAIEAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   V TS+A    VLPM      G +   S    +  G++ A++ +IF        
Sbjct: 964  KLRFRPIVMTSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYL 1023

Query: 823  IYDWR----AKNARI 833
            + ++      K  ++
Sbjct: 1024 LENFNEWLDKKRGKV 1038


>gi|146307207|ref|YP_001187672.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           mendocina ymp]
 gi|145575408|gb|ABP84940.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudomonas mendocina ymp]
          Length = 1059

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 68/608 (11%), Positives = 161/608 (26%), Gaps = 31/608 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G +        Q  +  +P  +P   +    D  G         
Sbjct: 9   QRPIFAAVLSLLILIGGAISLF-----QLPISEYPEVVPPTVVVRA-DFPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++    ++                +T++FA     +N   +V   + 
Sbjct: 55  NPKVIGETVASPLEQAIVGVEGMLYMSSQSTIDGRLTLTVTFALGTDLDNAQVQVQNRVT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +          ++            +  S        D++   +  
Sbjct: 115 RTMPTLPTEVQRLGVTVDKASPDLTMVVHLTSPDQRYDMLYLSNYAALNVKDELARLDGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++     T   +       N        G       +  Q
Sbjct: 175 GDVQLFGMGNYSLRVWLDPNKVASRGLTATDVVTAIREQNRQVAAGALGAPPSDAGNSFQ 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +    I                 +          
Sbjct: 235 LSINAQGRLVSEE-------------EFENIIIRVGDNGEITRLRDIARVELGSNQYALR 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L            +   +     ++     A L+          V         GS  
Sbjct: 282 SLLNNQPAVAIPVFQRPGSNAIEISDSVRERMAELKKSFPQGMDYEVVYDPTIFVRGSIE 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L   S+ G+
Sbjct: 342 AVVHTLLEAVVLVVLVVVLFLQTWRASIIPLAAVPVSLIGTFAVMHMFGFSLNALSLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +       +S   +           I  + +      V   F 
Sbjct: 402 VLAIGIVVDDAIVVVENVERNIALGKSPVEATRQAMKEVTGPIVATALVLCAVFVPTAFI 461

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+T+ +S +IS   ++++  A+   +++         + L         
Sbjct: 462 SGLSGQFYQQFALTIAISTVISAINSLTLSPALAAILLKDHHAPKDGFSRLLDRLFAGWL 521

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                                          +  G+   G +         V     +  
Sbjct: 522 FTPFNRMFERASNRYVGTVRRVLRGSSIAMLVYGGLLVLGYLGFSSTPTGFVPQQDKQYL 581

Query: 598 LESLQIGD 605
           +   Q+ D
Sbjct: 582 VAFAQLPD 589



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 74/237 (31%), Gaps = 9/237 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             ++     D            +         S      +  +  +   I       +   
Sbjct: 816  KVDDSAGPDRVMHYNGFLTAEINGAAAPGYSSGQAEAAIAKLLNEELPIGMTFEWTDLTY 875

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                     I    +  +   +A L+       W   L  I  + + +   +    + G+
Sbjct: 876  QQILAGNTAI---FIFPLCVLLAFLVLAAQYESWSLPLAVILIVPIVLFTAITGVIIAGL 932

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + N+     ++ L+G +  + +++ +  ++        +     + ++    L   + TS
Sbjct: 933  DNNIFTQIGLIVLVGLACKNAILIVEFAKE---KQEEGLDRVAAVLEACRLRLRPILMTS 989

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +A  ++V+P+ +    G  +  +  + +  G++      + +     + I  +  K 
Sbjct: 990  IAFIMAVVPLVLSSGAGAEMRHAMGVAVFSGMIGVTFFGLLLTPVFYVLIRGFVEKR 1046



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 62/140 (44%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLAAVPVSLIGTFAVMHMFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP--MAVWG--GSVIGSFAIPMAFGI 805
           L     S  +   +++ E  G  V T++    +V      + G  G     FA+ +A   
Sbjct: 425 L---GKSPVEATRQAMKEVTGPIVATAL-VLCAVFVPTAFISGLSGQFYQQFALTIAIST 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 481 VISAINSLTLSPALAAILLK 500


>gi|218259563|ref|ZP_03475263.1| hypothetical protein PRABACTJOHN_00922 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225008|gb|EEC97658.1| hypothetical protein PRABACTJOHN_00922 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1042

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/669 (11%), Positives = 180/669 (26%), Gaps = 47/669 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G++      L    +D++P   P               + +    
Sbjct: 9   RPVFSTVLSLVIVIVGII-----GLVMLPVDQYPQITPPV-------------VKISASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L        +   S       IT++F  +   +  A ++  
Sbjct: 51  PGASAMTVSQAVATPIEQELNGTPGMIYMQSSSSNSGGLTITVTFDVNANPDLSAVEIQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   S+L  D  +N +    +    ++      D      I  S       +D +   
Sbjct: 111 RVKLAESRLPADVVQNGITVEKQSASQLMTLSLLSDDPRFDEIYLSNFATINVLDVLRRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P RL  +  T   +       N+       G + + D D
Sbjct: 171 PGVGRVSNIGSRYYGMQIWVYPDRLANMGLTVKDLQNALKEQNSESAAGELGKQPVLDVD 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               +       +                +    +                 +    +  
Sbjct: 231 ITLPVTARGRLST--------------VKEFEDIVVRANPDGSIVRIRDVARVSLEASSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +              +                      
Sbjct: 277 STESGLNGKNAAILAIYMLPGANALEVATNVKEAMKEISQNFPEGLEYKFPFDATEYISQ 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T   + ++G +L + ++
Sbjct: 337 SIHEVYKTLFEALFLVVLVVFLSLQNWRAALIPTIAVPISLIGTFGFMLIMGFSLNMLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L IG+ VD  I+V E +     +   +   +           +  +++      V 
Sbjct: 397 LGLILAIGIVVDDAIVVVENVERLMHEEHLTAREATHKAMHELSGALIATSMVLAAVFVP 456

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G   R F+IT+ +S+L+S   A+++  AM   I+R  + K   +      +L
Sbjct: 457 VSFLSGITGALYRQFSITIVVSVLLSTVVALTLSPAMCAIILRPNRKKKNIVFRKINIWL 516

Query: 534 IPDCIAIQF------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                             R    G  ++     +            + +G   + ++   
Sbjct: 517 AKGNSKYGHLLEKAIQNPRRILAGFGMVIVFIFVLNRVIPTSFIPEEDQGFFTVELVMPE 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L   R   +       +       +N               T  + +   +  +   
Sbjct: 577 GATLERTRKVTDRAIAFIENLPAVAYVQNVTGSSTRVGTSQSRSTLTVILKPWEERKSSN 636

Query: 648 LSTIQNTEI 656
           +      E 
Sbjct: 637 MGVEDVMEQ 645



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+  ++     ++TLIG +  + +++ +  +   
Sbjct: 889  SWIVPIAVLLSLPVAALGAYLGIWVTGLHNDIYFQIGLVTLIGLAAKNAILIVEFAK--- 945

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                + +        +        + TS+A  + +LPM +    G +   S    + FG+
Sbjct: 946  IQVDSGVEVVKAALHAARMRFRPILMTSLAFVLGMLPMVLASGPGSASRHSIGTGVFFGM 1005

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +VA +  I +     + IY  + K
Sbjct: 1006 LVAITVGIVLVPFFFVLIYKIKGK 1029



 Score = 42.8 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 10/148 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL     + + +  T GF  + G   N+  +  ++  IG  V         + +N++
Sbjct: 363 WRAALIPTIAVPISLIGTFGFMLIMGFSLNMLTLLGLILAIGIVV----DDAIVVVENVE 418

Query: 750 LYTTSI--SFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFG 804
                   + R+   K+++E  G  + TSM      +P+  + G  G++   F+I +   
Sbjct: 419 RLMHEEHLTAREATHKAMHELSGALIATSMVLAAVFVPVSFLSGITGALYRQFSITIVVS 478

Query: 805 IVVAASSSIFIAAPI-LLFIYDWRAKNA 831
           ++++   ++ ++  +  + +   R K  
Sbjct: 479 VLLSTVVALTLSPAMCAIILRPNRKKKN 506


>gi|94495980|ref|ZP_01302559.1| Cation/multidrug efflux pump [Sphingomonas sp. SKA58]
 gi|94424672|gb|EAT09694.1| Cation/multidrug efflux pump [Sphingomonas sp. SKA58]
          Length = 1061

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 68/575 (11%), Positives = 150/575 (26%), Gaps = 34/575 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD-ELRSFLKKEG 85
                + ++P  +P               + +           +       +   +    
Sbjct: 29  FIGLPVSQYPDIVPPT-------------VTVSAQYPGASAETVASTVAAPIEQEINGVD 75

Query: 86  -IGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
            +   S +   +    IT++F      +     V   +     +L  + ++  +VT    
Sbjct: 76  DMLYQSSQSTGDGKVTITVTFKIGTDLDAAQVLVQNRVAVAVPRLPEEVQRLGVVTRKTT 135

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              +++               S   + Q  D++   +              +    DP R
Sbjct: 136 PEFLMVVNLQSPDGTFDRNYLSNYALTQVRDRLARLDGVGDVQLFGSRDYAMRIWIDPDR 195

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
              L  T  ++       N        G       +  Q  VE +  +            
Sbjct: 196 AAALDLTAGEIVSALRAQNVQVSAGSIGQPPYDRGEAFQIGVEMQGRL------------ 243

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +   +   R+        +            L+           +   + 
Sbjct: 244 -KTPEQFSDIVIRSDADGRQVRVRDVARVELGAQDYGINTYLSNKPTVVIAVMQRPGSNA 302

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        L           V          S      T      LV++V+ + +
Sbjct: 303 LDAAEKVQAEMDQLSQRFPKGLEYSVIYNPTEFISQSIDAVYHTLVEAVLLVVLVILVFL 362

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  ++   +I +++I T  +L+ LG +L   S+ G+VL IG+ VD  I+V E +   
Sbjct: 363 QNWRAAIIPIIAIPVSLIGTATILAGLGYSLNNLSLFGLVLAIGIVVDDAIVVVENVERN 422

Query: 442 NRKNQSVFCSLD---MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
                S   +        S A   I        + T+ +    G   + FA+T+  + +I
Sbjct: 423 IENGLSPLEAARLSMDEVSTALIAIVLVLCAVFVPTLFITGISGAFYQQFAVTISTATVI 482

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           S+  ++++  A    +++ K               +                G   L   
Sbjct: 483 SLILSLTLSPAAAALLLKPKHGPRDRSGDPVWRQKLGQGADAFNRGFDRMSAGYGRLTRF 542

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                        G+         V     +    
Sbjct: 543 LVARPKKMLLTYAGLIAATIALFWVTPGGFIPAQD 577


>gi|78048248|ref|YP_364423.1| preprotein translocase subunit SecF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325925402|ref|ZP_08186803.1| protein translocase subunit secF [Xanthomonas perforans 91-118]
 gi|78036678|emb|CAJ24369.1| preprotein translocase subunit SecF [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325544197|gb|EGD15579.1| protein translocase subunit secF [Xanthomonas perforans 91-118]
          Length = 322

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 151/282 (53%), Gaps = 5/282 (1%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    LIP+   I FM  R   + + ++ ++ S+ ++   G NY ++F GG  +    
Sbjct: 1   MKIFPLHLIPNDTKIDFMSWRKPVLILMLVLAVASVGIIVGKGFNYALEFTGGTLVQTSF 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR---VLEMVKKKI 642
            + VD+  VR  L      +   QN  G    ++RLQ    ++        V E V+K +
Sbjct: 61  QKTVDVDQVRERLSKAGFENAQVQNARGGNEVMIRLQPHGQNNNRDDAARTVAEDVRKAV 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
           T     +T+Q  E VGP++ ++L   G+   +   +  LIYI  RF+W FA+ A  T + 
Sbjct: 121 TSDENPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALF 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+ F +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   ++++
Sbjct: 181 DLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRAL--RVEPLEVLN 238

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           +SIN+TL R+V T++  F+S L + ++GG  +   A     G
Sbjct: 239 RSINQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIG 280


>gi|310821805|ref|YP_003954163.1| acriflavin resistance family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394877|gb|ADO72336.1| Acriflavin resistance family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1048

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 65/524 (12%), Positives = 156/524 (29%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L + +   GL        P+  +D+FP                    VL   
Sbjct: 9   KRPIFTAMLMAAVVVFGLFS-----YPRIGVDQFPDVEFPAVT---------VTTVLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + +   +    +E  + +    +      +  ++I + F      +  A  V   +Q 
Sbjct: 55  DPETIEKNISDPLEEALNTINGVDVLKSVNLESVSQIIIQFTLDTDPDIAAQDVRDRVQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +    ++         I+    +    I    E +          +       
Sbjct: 115 TLRQLPAEIDTPVVEKFDIGAAPILTLSLSGALPIE---ELTRTAEDVVKPALQRQGGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     Q+    DP RLR      + +S                         N  
Sbjct: 172 SITVTGGRERQIQLVVDPQRLRGYGLAISDVSQAVAAQ-------------------NLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +   +   SG        +      +    I     GA        D +  P        
Sbjct: 213 VPGGRATDSGRERVVRLTSEVKNVEELRNLIIASPKGAPIRVRDVADVVDGPEEARGAAS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   +       +          LA + +              N      S + 
Sbjct: 273 EGGRTAVALTVRKQSGSNTVQVAENVKNSLAELNKTLEPKGVQVTTISDNSRFIRASIAS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   L +I++ + +   +  +VA  ++ ++V+ T A+++LLG T  + ++  + 
Sbjct: 333 VQFDMVLGGALAVIIVLVFLRNLRSTIVAAIALPVSVVGTFAVMALLGFTFNMITMLALT 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I     + ++   +   G  +    +    +  +   + + F  
Sbjct: 393 LSIGLLIDDAIVVIENIVRHMEEGKTPAQAALEGTGQIAVAVLAVTLAIVAVFIPVAFME 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G     F +T+ ++++IS   ++ +   +   ++      +
Sbjct: 453 GTIGQFFYQFGVTVAVAVIISYSVSMILTPMLSSRLLHEHGGPT 496



 Score = 90.1 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 90/250 (36%), Gaps = 14/250 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR   + +   + +           V L  +        +V E VK  + E+      + 
Sbjct: 254 VRDVADVVDGPEEARGAASEGGRTAVALTVRKQSGSNTVQVAENVKNSLAELNKTLEPKG 313

Query: 654 TEIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            ++     +   IR  I  V     +  A+A++I +         + A   L + +  T 
Sbjct: 314 VQVTTISDNSRFIRASIASVQFDMVLGGALAVIIVLVFLRNLRSTIVAAIALPVSVVGTF 373

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              AL G  FN+  + A+   IG  ++D +VV + +   ++      +      +   + 
Sbjct: 374 AVMALLGFTFNMITMLALTLSIGLLIDDAIVVIENI---VRHMEEGKTPAQAALEGTGQI 430

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPIL--LFI 823
               +  ++A     +P+A      G     F + +A  ++++  S   I  P+L    +
Sbjct: 431 AVAVLAVTLAIVAVFIPVAFMEGTIGQFFYQFGVTVAVAVIIS-YSVSMILTPMLSSRLL 489

Query: 824 YDWRAKNARI 833
           ++      ++
Sbjct: 490 HEHGGPTNKL 499



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/170 (11%), Positives = 67/170 (39%), Gaps = 13/170 (7%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  +++  + + + +  +F+        + +L       +G   + G   ++     ++ 
Sbjct: 852  VQALLLGIVLLYMILAAQFESLIHPFTIMISLPFSFIGAIGALLVTGQAMSMFGFIGIIM 911

Query: 729  LIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            L+G  V + +++ D   ++R+         S  + + ++    L   + T++A    ++P
Sbjct: 912  LMGLVVKNGILLVDFTQQLREE------GKSAHEALLQAAPIRLRPILMTTIAMIAGMVP 965

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +A+    G       A+ +  G++ +   ++ +   +   +     +  R
Sbjct: 966  VALARGDGAETRVPMALVIIGGLITSTVLTLGVVPVVYSLLDGLSTRLKR 1015


>gi|260460399|ref|ZP_05808651.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mesorhizobium opportunistum WSM2075]
 gi|259034044|gb|EEW35303.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mesorhizobium opportunistum WSM2075]
          Length = 1058

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 70/613 (11%), Positives = 159/613 (25%), Gaps = 44/613 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   +  ++   G +           + +FP   P               +V+    
Sbjct: 8   RPIFASAIAIIMVLAGTI-----CYFLLPVSQFPDITPP-------------QVVVSAHY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +    +  L   +    G+   S     +    IT++F         A  V  
Sbjct: 50  PGASAQVVADTVTTPLEQQINGVQGMTYMSSTSSNDGSSTITITFDVGYSLSTAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L     +  +    +    +++            +  S     Q +D +   
Sbjct: 110 RVSQAASSLPAIVNQGGVTIKKQNPNFVLIVNLTSPDSSVDPVALSNLAYLQVVDPLKRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L  L  T   +       N        G        
Sbjct: 170 QGVGDVQIFGERRYSMRVWLDPDKLANLGITAVDVQNAIAEQNVQVAAGKIGQSPAPAGT 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  V     +S                   + +  +              I       
Sbjct: 230 AFEMQVNAVGRLS------------DPKEFGDIVVRANTDSGSLVRLRDVARIELGALQY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +     +        L           +          
Sbjct: 278 SSSAFFGKDPTVVLAVYQMPGSNALDLQQRVKDKMQELSGRFPKGVSYAMHYDTTRFVSA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+ V+F+ +   +  ++   +I ++++ TL ++ +LG +L + S+
Sbjct: 338 SMHDVLITLGEALVLVVAVVFVFLQSWRTTIIPTIAIPVSLVATLVVMEMLGFSLNMLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IGL VD  I+V E +  +         +     +     I  +    +   V +
Sbjct: 398 LGMVLAIGLVVDDAIVVVENVERQLEAGLKPLAATKAAMAEVTGPIIATTAVLMAVFVPV 457

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPL 528
            F  G + R    FA+T+ +S+ IS F ++++  A+    +RY++       +  +    
Sbjct: 458 AFIPGVSGRLYNQFALTVAISVGISAFNSLTLSPALSAAFLRYRQGTQFVLFRWFNSGFD 517

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +              +                   ++ +G   + +     
Sbjct: 518 KLSHAYAHGVRFLIRLRWIMLGLFAAGLVATYFVWQKLPSTFLPVEDQGYFFVVIQLPDG 577

Query: 589 VDLSVVRSNLESL 601
             L    +  +  
Sbjct: 578 ASLERTDAVAKKA 590



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 64/181 (35%), Gaps = 9/181 (4%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                   +EL    I  V+     + +++ +      W      +  + L +       +
Sbjct: 855  EWTGITFQELKAGSIASVVFGLAIVFVFLILAAQYESWAMPFMVLLAVPLALFGAFAALS 914

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            + G++ ++ +    + LIG +  + +++ +  R   +     +S  +   ++    L   
Sbjct: 915  VRGMQIDVYSQIGFVMLIGLAAKNAILIVEFAR---RRREEGLSIVEAAMEAARLRLRPI 971

Query: 773  VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + T+ A  + VLP+      G S   S    +  G+V A   S+         I   R +
Sbjct: 972  LMTAFAFILGVLPLMFATGAGASSRQSIGTTVFGGMVAATILSLVFVPVFYAVIEQLRER 1031

Query: 830  N 830
             
Sbjct: 1032 R 1032



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 56/143 (39%), Gaps = 6/143 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +     + + +  TL    + G   N+ ++  ++  IG  V+D +VV + +    
Sbjct: 363 SWRTTIIPTIAIPVSLVATLVVMEMLGFSLNMLSLLGMVLAIGLVVDDAIVVVENV---E 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +     +        ++ E  G  + T+       +P+A   G        FA+ +A  +
Sbjct: 420 RQLEAGLKPLAATKAAMAEVTGPIIATTAVLMAVFVPVAFIPGVSGRLYNQFALTVAISV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRA 828
            ++A +S+ ++  +      +R 
Sbjct: 480 GISAFNSLTLSPALSAAFLRYRQ 502


>gi|296270033|ref|YP_003652665.1| protein-export membrane protein SecF [Thermobispora bispora DSM
           43833]
 gi|296092820|gb|ADG88772.1| protein-export membrane protein SecF [Thermobispora bispora DSM
           43833]
          Length = 326

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 131/299 (43%), Gaps = 14/299 (4%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + F+  R    G+S +    S+  L   GLN G++F+GG            ++ VR  
Sbjct: 13  TEVDFIGRRRLWYGLSAVLLAVSLAGLVGRGLNLGVEFEGGSVFTFPRTPGATVAQVREA 72

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +++   G +  Q                 +S+    +  + +             +T+++
Sbjct: 73  VQAAGPGRVIVQTAGSGWRVT-------TESLDGLEIAAVRRAVAERFGVPEHRVSTQVI 125

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G     E+ R+ ++G+ +   A+ +Y+ + F+W  AL A+  L  D+  T G +A  G E
Sbjct: 126 GATWGGEVSRRALLGLAVFLAAITLYLSVAFEWRMALAAVVALGHDLVITAGVYAWSGFE 185

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYT 775
                V   LT++GYS+ D VVV+D +++          +++    + ++N TL RS+ T
Sbjct: 186 VTPATVLGFLTILGYSLYDAVVVFDMIKEVTAGPGRSARMTYARAANAALNRTLVRSLNT 245

Query: 776 SMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           S  A + V  +        G   +   A+ +  G++V   SS+ +A PIL+ + +   +
Sbjct: 246 SFVAILPVAAVLFVGTTLLGAGTLRELALALFTGMIVGTYSSLCVATPILVTLKEREPR 304


>gi|209522896|ref|ZP_03271453.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Arthrospira maxima CS-328]
 gi|209496483|gb|EDZ96781.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Arthrospira maxima CS-328]
          Length = 1107

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 62/582 (10%), Positives = 155/582 (26%), Gaps = 36/582 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G++       P   + + P  +   +I++       + + +  D
Sbjct: 10  KRPVLTTVCSILIVLVGVISI-----PLLPISQLPQ-LANTQINV-------TAVNIGAD 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
            +      +    +   + +        +      + ++++F  +  ++     V   + 
Sbjct: 57  AET-TETTVTSILEREINGVDNMRYISSNTANNGVSNVSVAFPVNVDRDIAQVNVNNRVS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-----VISHAIEQSMEIIRQRIDQIG 175
              S L    ++  +         +++     D       I   +  S  +    +D+I 
Sbjct: 116 QAASSLPDVVQQVGITVEASSPSILLVLGFYSDTDQNNQPIYDDVFISNFLDLNVLDEIT 175

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            +               +    +P ++         +       N        G      
Sbjct: 176 RAPGVGSVTILGERRYAMRIWLNPQKIAARGLVAQDVVAALRQQNIQVGAGKIGQAPTPP 235

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
               +  +  +  +                 +    +                 +     
Sbjct: 236 EQRFEIPLRAQGRL-------------RDVSEFEQLVVGVGNDGTLIKITDVGRVELGAQ 282

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                               +   +   T E        L A   P     +        
Sbjct: 283 DYNLDATYNNQAAVGMAVYQRPGSNALETAEAVKSKMQELSASFPPGVRYAIPYDTTLFV 342

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV++V+F+ +   +  L+   +I + +I ++A L  +G  L   
Sbjct: 343 QASLQEVVITLLQTITLVILVIFVFLQDWRTTLIPTIAIPVALIGSMAGLKAMGFELNTL 402

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIAT 474
           ++ G  L  GL VD  I++ E +  +  +      +          +TI  S +   +  
Sbjct: 403 TLFGCTLAAGLVVDDAIVIVEAVSSKIAQGMKPRQAALDAMEELTGATISTSLVLLAVFI 462

Query: 475 VVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V FF G      + F++T+  +I+ S F A+S    M   ++R  K     +      F
Sbjct: 463 PVAFFPGTTGIIFQQFSLTITFAIICSTFNALSFSPTMAGVLLRPAKKTKGPLGWFFEKF 522

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
                            +       +          +     
Sbjct: 523 NQGFGFIQNQYAKLIRFLVRINTLVMGIFVGGLVLTVLMYGW 564



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 74/244 (30%), Gaps = 6/244 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R  L +      +  N        V  +           V   +++      P   
Sbjct: 272 TDVGRVELGAQDYNLDATYNNQAAVGMAVYQRPGSNALETAEAVKSKMQELSASFPPGVR 331

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                     +   L    I  +    + +L+       W   L     + + +  ++  
Sbjct: 332 YAIPYDTTLFVQASLQEVVITLLQTITLVILVIFVFLQDWRTTLIPTIAIPVALIGSMAG 391

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G E N   +       G  V+D +V+ + +          +  R     ++ E  G
Sbjct: 392 LKAMGFELNTLTLFGCTLAAGLVVDDAIVIVEAV---SSKIAQGMKPRQAALDAMEELTG 448

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++ TS+      +P+A + G+       F++ + F I+ +  +++  +  +   +    
Sbjct: 449 ATISTSLVLLAVFIPVAFFPGTTGIIFQQFSLTITFAIICSTFNALSFSPTMAGVLLRPA 508

Query: 828 AKNA 831
            K  
Sbjct: 509 KKTK 512



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 62/180 (34%), Gaps = 18/180 (10%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAV--- 723
              IV   +  +   + +  +++ Y   L  +  + L +   L              +   
Sbjct: 879  AAIVIFGLGFVIAFLVLSAQYESYIDPLIIMLAVPLAVLGALAAIWFRSNVLMAGGIWPV 938

Query: 724  --------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
                     A++ LIG +  + +++ +      +L    ++ +     +  +       T
Sbjct: 939  VNNDVYAQVALVMLIGLASKNSILIVEFAN---QLRDKGLNIQKAAALAAEQRFRPIQMT 995

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++++ +   P+ +    G S   S    +  G++V    S+ I   + + I    A+  +
Sbjct: 996  AISSLVGFWPLVIASGAGASSRWSLGTAIFGGMLVGTLLSLLITPNLYIAIKTLEARFLK 1055


>gi|254431973|ref|ZP_05045676.1| RND transporter, HAE1/HME family, permease protein [Cyanobium sp.
           PCC 7001]
 gi|197626426|gb|EDY38985.1| RND transporter, HAE1/HME family, permease protein [Cyanobium sp.
           PCC 7001]
          Length = 1097

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 69/532 (12%), Positives = 144/532 (27%), Gaps = 28/532 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  IGL+       P   ++  P   P          +   +      
Sbjct: 9   KRPVLTTVCSILIVLIGLIAI-----PSLPIENLPPIAPP---------QIQVNATYGGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVF-SMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                   +    ++  + +         +    Q+ + + F +          V   + 
Sbjct: 55  NSLVTEQAVTNVLEQQINGVPDAAYISSLTTNTGQSTVNVFFDEGSDINIDQVNVQNRVS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L        +         ++  Q +  +    A   +  I R+   Q+      
Sbjct: 115 LAMPQLPSQVSSTGVSVIQTTPSILLAYQLSSTEGQFDAAYLNGLIYRELFYQLERIPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q               DP RL     T  ++       N    G + G      +    
Sbjct: 175 AQASLFGGSTPAFWLFIDPDRLTAYQLTADQVVSAVQSQNTVAVGGLVGGPPSTGNQAFT 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +          L     N         + +     G     +   +           G
Sbjct: 235 YPI----------LVENNGNLVSIEDLNQLIVGRSPQGNLLRLQDVGEATYGFNTFATQG 284

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                +     +    L     A   P                +  
Sbjct: 285 VNIQGHPAITIGVYQTPDSNALQVSQAVVALMDQFVASLPPGVTLTQIYNVGQFIESAVD 344

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LVL++LF+ +   +  +V   +I +++I   A +   G ++   ++ G+
Sbjct: 345 GVVDALGLAIVLVLVILFVFLQDWRATVVPSLAIPISLIGAFAFIKAFGFSINQLTLLGL 404

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  GL VD  I+V E + +          +           +  + +  +   V + F+
Sbjct: 405 VLATGLVVDDAIVVIEAVAKNIETGMRPRQAALACMGELIGALIATALVLMAVFVPVAFY 464

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
               G   R FA+T+  SI IS F A++    M   ++R  K  +       
Sbjct: 465 PGGIGIIYRQFALTIAFSIAISAFNALTFSPMMAALVMRSGKPPAPKGWVWP 516



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 83/215 (38%), Gaps = 8/215 (3%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             Q    +++  ++ +  +  +    +P            +     +   +  + ++ + 
Sbjct: 297 VYQTPDSNALQVSQAVVALMDQFVASLPPGVTLTQIYNVGQFIESAVDGVVDALGLAIVL 356

Query: 680 MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           +L+ +++    W   +     + + +     F   FG   N   +  ++   G  V+D +
Sbjct: 357 VLVILFVFLQDWRATVVPSLAIPISLIGAFAFIKAFGFSINQLTLLGLVLATGLVVDDAI 416

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIG 795
           VV + +    K   T +  R      + E +G  + T++      +P+A + G    +  
Sbjct: 417 VVIEAV---AKNIETGMRPRQAALACMGELIGALIATALVLMAVFVPVAFYPGGIGIIYR 473

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            FA+ +AF I ++A +++   +P++  +     K 
Sbjct: 474 QFALTIAFSIAISAFNAL-TFSPMMAALVMRSGKP 507



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 82/219 (37%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R     G   A     + +    T    L             + +L       ++  
Sbjct: 863  NLYRTILVQGAEAAGKSSGQALTAIQTIFRRLDFNNIGYAFTGIAALQLSAGSASVLVFG 922

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +++Y+ +      +   +  + T+ L +   L F AL  I+ N+ A   ++TLIG +
Sbjct: 923  LGVLIVYLVLSAQYESYVTPVVILMTVPLAMLGALVFLALRSIDLNIYAQVGLVTLIGLA 982

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ +   ++++      +      +S    L   + T++AA    LP+ +    G
Sbjct: 983  AKNGILIVEVAEQHLEAGMEPAAAAMAAAES---RLRPILMTAIAALAGFLPLVLATTAG 1039

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +   S    +  G++VA   S+ +  P  + I    A+
Sbjct: 1040 ANSQQSLGTVIFGGLLVATVLSLGVVPPFYVLIKQLEAR 1078


>gi|254391318|ref|ZP_05006522.1| preprotein translocase subunit SecD [Streptomyces clavuligerus ATCC
           27064]
 gi|197705009|gb|EDY50821.1| preprotein translocase subunit SecD [Streptomyces clavuligerus ATCC
           27064]
          Length = 573

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 103/525 (19%), Positives = 191/525 (36%), Gaps = 45/525 (8%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95
                LG+DL GG+ + L+   +           +      L   +   G+    ++   
Sbjct: 13  DTTPRLGIDLAGGTTITLKAKAEPGKESAVNETNMNTAVGILERRVNGLGVSEAEVQTQG 72

Query: 96  -NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT---------------- 138
            + I ++       E    +V    Q     +        +                   
Sbjct: 73  RSHIIVNIPKGTDSEQARRQVGTTAQLYFRPVLQVAAGAPVPQQPTPGASESGKPAEGKD 132

Query: 139 -----TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                   + S   S     Q      +        +    G SE      G+       
Sbjct: 133 AKDAKDGDKASPSASTGTSAQPGGSTPQGRAVTDALKDPSPGASEPGKPAEGAKDGKDGK 192

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD----------GNQYLV 243
              + P           + +F  +   + K           ++             +  +
Sbjct: 193 DAAKTPDPAPTGDVAALQTAFATLNCEDQKARAAVTESARPENPMVSCGKNSAGQWEKYL 252

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               E+ G  ++ A   FD      +V + F + G+++F ++T     +         VL
Sbjct: 253 LGPAEVDGKDVDDAKGQFDQNRGIWIVTMDFTDKGSKKFQKITSKLSQQQSPANQFAIVL 312

Query: 304 TAPVINQAIPSG----KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              V++    +      A+ISG+F  ++A  L  ML  G+LP+         V A LG +
Sbjct: 313 DGEVVSAPQVNQTLTANAEISGSFNQKSAQELGNMLSYGALPLTFQEESVTTVSAALGGE 372

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLP 415
            +  G  A   GL L++++++  Y     +A  S+ ++  LT  L+SLLG      L LP
Sbjct: 373 QLRAGLIAGAIGLALVIIYLVAYYRGLAAIAILSLLVSAALTYVLMSLLGPAIGFALNLP 432

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G ++ IG+  DS I+  ERIR+E R+ +++  +++  + RA  TI  S+  + +A  
Sbjct: 433 AVCGAIVAIGITADSFIVYFERIRDEVREGRTLRPAVERAWPRARRTILVSDFVSFLAAA 492

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           VLF    G V+GFA T+GL+ L+ +       + +M    R K  
Sbjct: 493 VLFIVTVGKVQGFAFTLGLTTLLDVVVVFFFTKPLMTLAARSKFF 537



 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 88/261 (33%), Gaps = 10/261 (3%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              +      KG  +   + ++        +      + D    +       L       
Sbjct: 276 IWIVTMDFTDKGSKKFQKITSKLSQQQSPANQF--AIVLDGEVVSAPQVNQTLTANAEIS 333

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
           G    ++            +      ++   V   +  E +R G++   I    ++IY+ 
Sbjct: 334 GSFNQKSAQELGNMLSYGALPLTFQEESVTTVSAALGGEQLRAGLIAGAIGLALVIIYLV 393

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVY 741
             ++   A+ AI +L++    T    +L G       NL AV   +  IG + +  +V +
Sbjct: 394 AYYRGLAAI-AILSLLVSAALTYVLMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVYF 452

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      + R  ++++        + +   +F++   + +     +  FA  +
Sbjct: 453 ERIRDEVRE---GRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTL 509

Query: 802 AFGIVVAASSSIFIAAPILLF 822
               ++      F   P++  
Sbjct: 510 GLTTLLDVVVVFFFTKPLMTL 530


>gi|219684444|ref|ZP_03539388.1| protein-export membrane protein SecF [Borrelia garinii PBr]
 gi|219672433|gb|EED29486.1| protein-export membrane protein SecF [Borrelia garinii PBr]
          Length = 299

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 137/300 (45%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +   I      + F  V + + F        +  G N+GIDF   + + +   +      
Sbjct: 1   MQRVINFSKYGSNFLIVSVILTFIGLIYTFFYHGGYNWGIDFSPRVNINLSIEKSDIKEN 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
               + S     +   +                  +        V+K I + +  +   N
Sbjct: 61  EIKRIFSPIYKALDVNSIFSPNENKSEFSIMVKSDIIDYAFKTEVQKTIMDELKKTFNAN 120

Query: 654 TEI-----VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            E+     +    S  L  K I+ V+ +   +LIYI +RFK  +A+ +I     DI    
Sbjct: 121 IEVLDSYFIDSSFSSTLRIKSILLVLGTFTLILIYITLRFKLSYAIASILATFHDIFFIA 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  +F IE N   + A+LT+IGYS+ND ++++DR+R N++   T  +F ++++ SI++T
Sbjct: 181 AFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVRRL-TDNTFLNVLNISISQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R+V TS+  F++V  + V+    I  F++    G++V   SS+FIA+PILL +Y    
Sbjct: 240 LSRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK 299


>gi|298528786|ref|ZP_07016190.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512438|gb|EFI36340.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1043

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 187/687 (27%), Gaps = 46/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G        L    ++++P  +P   +                  
Sbjct: 8   RPIFASVISIIIVLAG-----TTALRVLPVEQYPEVVPPEVVV-------------NASY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +     +         +   +I ++F      +  +  V  
Sbjct: 50  PGASAEVVAEAVAAPLEQEINGVDDMLYMESTTTDDGTLQIVVTFEMGTDPDMASVNVNN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++    +L    +   +         +++           ++  +   I   ++++   
Sbjct: 110 RVEAALPRLPQAVRDQGVRAEDRSTNILMVPVLYSPDESRDSLFIANYAIMNVLEELNRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +   QDP +L +   T + ++      +        G        
Sbjct: 170 PGVGEASVFAPEDYSMRIWQDPDKLARHDLTPSDLADAIREQSAHYAAGRIGADPAPAGV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V     ++             +  +    I                         
Sbjct: 230 DFTYSVSTDEMLA-------------EPEEYEDIILRSGKNVSTLRLGDVARAELGPQRY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T E        +           +          
Sbjct: 277 GFSAEYNGQQAVGMGVFLAPGANAMETAEVVNEALEEMSVHFPEGLDYTMGYDVTEFIEA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   LV++V F+ +   +  L+   +I +++I T A +  +G ++ L ++
Sbjct: 337 SIQEVLITLLIAMALVVLVTFIFLQRLRATLIPVTAIPVSIIGTFAGMLAMGFSVNLLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD+ I+V E +    R+       +      +    +  S +  +     
Sbjct: 397 FGLVLSIGIVVDNAIIVMENVERLMRERSLKAREASIETMKQVAGAVLASTLVLVAVFAP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---KKMKSIDINPLSR 530
             F GG      R FA+T+ +S+++S   A+++  AM   ++     +  +       + 
Sbjct: 457 SAFLGGMTGELYRQFAVTIAVSVVVSGVVALTLTPAMCALLLDRQRGRLPRPFVWFNRAF 516

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANR 587
                  + +     R   VG+ +        +     +  G+   + +GG  + +    
Sbjct: 517 EMQTSAYVWVVSKMVRHAAVGVLLFAVFTGATVYAVTRMAPGLIPQEDQGGFIMAMELPA 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              LS      + +  G +  +  +          +              +        P
Sbjct: 577 ASSLSRTEQARDKVMDGLMEMEEVESFTGIAGVDIFDMALRSHMGMGFVNLTHWDERQEP 636

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI 674
               Q+       + +E+    I+  +
Sbjct: 637 GQDAQSMTEKVMGMGQEIQEANILAFV 663



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/431 (10%), Positives = 124/431 (28%), Gaps = 10/431 (2%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           +  + +T T      IV+   +  D ++               +  ++     RA     
Sbjct: 75  MLYMESTTTDDGTLQIVVTFEMGTDPDMASVNVNNRVEAALPRLPQAVRDQGVRAEDRST 134

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +  +   +            +  +AI   L  L  +                        
Sbjct: 135 NI-LMVPVLYSPDESRDSLFIANYAIMNVLEELNRLPGVGEASVFAPEDYSMRIWQDPDK 193

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +               +       G   +                    + +    + + 
Sbjct: 194 LARHDLTPSDLADAIREQSAHYAAGRIGADPAPAGVDFTYSVSTDEMLAEPEEYEDIILR 253

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           + + V    +     +         + +      V +              E+V + + E
Sbjct: 254 SGKNVSTLRLGDVARAELGPQRYGFSAEYNGQQAVGMGVFLAPGANAMETAEVVNEALEE 313

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWYFALGAITTL 700
           +           +G  ++  +       +I   IAM + + + F    +    L  +T +
Sbjct: 314 MSVHFPEGLDYTMGYDVTEFIEASIQEVLITLLIAMALVVLVTFIFLQRLRATLIPVTAI 373

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + I  T       G   NL  +  ++  IG  V++ ++V + +     +   S+  R+ 
Sbjct: 374 PVSIIGTFAGMLAMGFSVNLLTLFGLVLSIGIVVDNAIIVMENV--ERLMRERSLKAREA 431

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             +++ +  G  + +++       P A  G   G +   FA+ +A  +VV+   ++ +  
Sbjct: 432 SIETMKQVAGAVLASTLVLVAVFAPSAFLGGMTGELYRQFAVTIAVSVVVSGVVALTLTP 491

Query: 818 PILLFIYDWRA 828
            +   + D + 
Sbjct: 492 AMCALLLDRQR 502



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 83/252 (32%), Gaps = 17/252 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +     + + L+ + S    +    I+  N +     +           A+  V E+ +K
Sbjct: 786  VRSEHGQMLPLTSLVSLERDVGPDVINRYNVNSAARLMADAAPGYTTGEAKEAVEEVAEK 845

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             I                   +        +G++   + +LI      +W   L   + +
Sbjct: 846  IIGNGETSLGWIGEAFQLDVAAGAGGTAFGLGLV---MVVLILAAQYERWTLPLAVASAV 902

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTSISF 757
               +        L G   ++     +L LIG +  + +++       R+N       ++ 
Sbjct: 903  PFGVLGASLAAMLRGFPNDIYFQVGLLVLIGLAAKNAILIVAFAAQNREN-----EGMNS 957

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV-AASSSI 813
             +    +  +     V T+M   I VLP+      G +        +  G+++ +  + +
Sbjct: 958  TEAALSAARQRFRPIVMTAMTFIIGVLPLVFATGAGAASRQVIGTVVVGGMLLASTVAIL 1017

Query: 814  FIAAPILLFIYD 825
            F+  P+   + D
Sbjct: 1018 FV--PLFYKLMD 1027


>gi|119485967|ref|ZP_01620029.1| cation or drug efflux system protein [Lyngbya sp. PCC 8106]
 gi|119456742|gb|EAW37870.1| cation or drug efflux system protein [Lyngbya sp. PCC 8106]
          Length = 1113

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 76/634 (11%), Positives = 167/634 (26%), Gaps = 52/634 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   ++  +G +       P   + + P  +   +I+           V  V+
Sbjct: 10  KRPVLTTVCTIIVILLGAICI-----PLLPITQLPQ-LANTQIN-----------VTAVN 52

Query: 62  EDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                       +  L   +   E +   S     N    I ++F     ++     V  
Sbjct: 53  IGADAQTTETTVTTILEREINGVEDMRYISSNTGNNGISNIAVAFPVDVDRDIAQVNVQN 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-----SHAIEQSMEIIRQRID 172
            +      L    ++  +   +     +++     D         + I  S  +    +D
Sbjct: 113 RVSQAEPTLPETVRQTGISVASSSPSILLVIAFYSDTDDNGRYLYNDIFMSNYLDLSVLD 172

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           QI       Q          +    DP ++     T   +S      N        G   
Sbjct: 173 QIRRVPGVGQATIFGERQYAMRIWLDPQQMAARGLTAQDVSAALQQQNIQIGAGKLGQSP 232

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
             +    +  ++    ++                +    +                    
Sbjct: 233 TPEGQRFEIPLQATSRLTID--------------QFEDLVLKVGDDGTLIQLRDVGRAEL 278

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                                      +            A L     P     +     
Sbjct: 279 GAENYDTVATFRGQPTVGLGIYQLPGSNALEVANQIKATMAELSESFPPGLNYEIPYDTT 338

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S +    T     GLV++V+F+ +   +  L+   +I + +I  +A L ++G  L
Sbjct: 339 LFISASLNEVVVTLTQAIGLVILVIFIFLQDWRTTLIPAVAIPVALIGAMAGLKIMGFEL 398

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITAL 471
              ++    L  GL VD  I++ E I  +  +      +          +TI  S +   
Sbjct: 399 NTLTLFACTLATGLVVDDAIVIVEAISLKIEQGMKPRQAALDAMQELTGATIATSLVLMA 458

Query: 472 IATVVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--------- 520
           +   V FF G      + FA+T+  ++  S F A+S   +M   ++R K           
Sbjct: 459 VFIPVSFFPGTTGIIFKQFALTIAFAVAFSTFNALSFSPSMSAVLLRPKDKTKGPLGLLF 518

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           K  +             +                   +  +   +  G     + +G   
Sbjct: 519 KKFNQGFGGIQNQYAKAVNFLLKINTLVMGIFVGGLVLTVLMYQWVPGGFIPEEDQGYFI 578

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
           + + A   V L+     ++ +    +      G 
Sbjct: 579 ILIQAPEGVSLNYTAEAIDEITDRVLEAPEVLGT 612



 Score = 81.7 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 72/206 (34%), Gaps = 9/206 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 +  + +     +      +T +       E++      + +  + + I++    
Sbjct: 312 NQIKATMAELSESFPPGLNYEIPYDTTLFISASLNEVVVTLTQAIGLVILVIFIFLQ--- 368

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +   +    + G E N   + A     G  V+D +V+ + +    
Sbjct: 369 DWRTTLIPAVAIPVALIGAMAGLKIMGFELNTLTLFACTLATGLVVDDAIVIVEAI---S 425

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 +  R     ++ E  G ++ TS+      +P++ + G+       FA+ +AF +
Sbjct: 426 LKIEQGMKPRQAALDAMQELTGATIATSLVLMAVFIPVSFFPGTTGIIFKQFALTIAFAV 485

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
             +  +++  +  +   +   + K  
Sbjct: 486 AFSTFNALSFSPSMSAVLLRPKDKTK 511



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 71/214 (33%), Gaps = 20/214 (9%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            + +         +               E    G   +I     +++++ +  ++   + 
Sbjct: 844  QAIAAMEQAASEVLDPGFGYAWQGSALEEQASGGAAPIIFGLGLVMVFLVLSAQYESYID 903

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAV--------------AAVLTLIGYSVNDKVVVY 741
             +  ++      LG  +   +  N+  V               A++ LIG +  + +++ 
Sbjct: 904  PLIIILSVPLAVLGAMSAIWLRSNVLMVGSIWPVVTNDVYCQVALVMLIGLASKNSILIV 963

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFA 798
            +      +L    +S +    ++  +       T++++ I   P+ V    G S   S  
Sbjct: 964  EFAN---QLRDKGLSIKKAASQAAEQRFRPIQMTAISSLIGFWPLVVASGAGASSRWSLG 1020

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +  G+ V    S+ I   + + I    A+  +
Sbjct: 1021 TAIFGGMFVGTLLSLLITPNLYIAIKTLEARVLK 1054


>gi|332829496|gb|EGK02145.1| hypothetical protein HMPREF9455_01779 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1019

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 83/693 (11%), Positives = 193/693 (27%), Gaps = 54/693 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G++           +  +P+                 ++     
Sbjct: 9   KRPVLATVFVLVIFLLGMI-----GYTYLGVREYPNIDNPII---------SVNVTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +        S  Q   +IT+ F  S   E  A+ V   +  
Sbjct: 55  NAEIIENQITEPLEQNINGIPGIRSLTSSSSQGSCRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I+    +I       +E S        +++    +  
Sbjct: 115 AQRYLPRDCDPPTVSKADADANPIIQI--SIQSEKRSLLELSEIAELTVKERLQTIPNVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP ++     T   +       N            L  +     
Sbjct: 173 AVEIWGQNRYSMRLWLDPVKMAAYGITPMDVKNAVDRENVELPSGSIEGDALELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L++   E                      ++   E                         
Sbjct: 233 LMQTPEEF--------------------NNMIIKEDNFNVVRFKDVGTAELGTEDQRSLM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   +   +     + A I    LR          V   N      S + 
Sbjct: 273 RRNGVPAVSTVIIPQPGANQIEISDEAMIRLEQLRKDLPEDVFIDVAFDNTKFIRASIAE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+I++F+ +   +  LV    I ++++    ++ + G ++ + S+  +V
Sbjct: 333 VEETVYIAFALVVIIIFLFLRDWRVTLVPCVVIPVSLVGAFFVMYVAGFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +GL VD  I+V E I  +  +  S   +   G    +  +  + I+ +     + F  
Sbjct: 393 LAVGLVVDDAIVVTENIYLKIEEGMSPKEAGIEGSKEIFFAVISTTISVVAVFFPIVFLE 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F+  +  ++LIS F A++    +   +++ ++  +        FF      
Sbjct: 453 GMTGRLFREFSFVIAGAVLISAFVALTFTPMLSTKLLKKEEKPNWFYRKTEPFFNGLMNG 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI---------------QLGV 583
               +        I     I ++  +         +                        
Sbjct: 513 YHNALHKFLSIKVIIWPIIIITLVSIVYLMKVIPSEMAPLEDRSQITIRTSGPEGSTYEY 572

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           + N    ++V+  ++   ++ +       G    L     +  D        E+ K    
Sbjct: 573 MRNYTEKIAVIADSVAPERLINTMRVWTGGGNVNLNLSGIKERDRSQMQIADELSKAVRK 632

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
           E    + +Q     G + S   I+  +    I+
Sbjct: 633 ETGARTFVQQQSTFGGRRSSMPIQYVLQAPNIA 665



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 63/162 (38%), Gaps = 7/162 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + ++I++++R  W   L     + + +        + G   N+ ++ AV+  +G 
Sbjct: 339 IAFALVVIIIFLFLR-DWRVTLVPCVVIPVSLVGAFFVMYVAGFSINVLSMLAVVLAVGL 397

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +          +S ++   +   E     + T+++      P+    G 
Sbjct: 398 VVDDAIVVTENI---YLKIEEGMSPKEAGIEGSKEIFFAVISTTISVVAVFFPIVFLEGM 454

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  F+  +A  ++++A  ++     +   +     K  
Sbjct: 455 TGRLFREFSFVIAGAVLISAFVALTFTPMLSTKLLKKEEKPN 496



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ L I   L F  +  I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPFVIMLTVPLAIAGALLFMYIKDISMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +     +S  + I  +  + L   + TS    + +LP+               + +  G+
Sbjct: 923  QRQEAGMSKLEAIQGASVQRLRPILMTSFCTVLGLLPLVFASAEGANGRMAMGVAVIGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +V+   +IFI   + L+I   R K  
Sbjct: 983  MVSTLLTIFIVPAMYLYISTDRGKKK 1008


>gi|219685710|ref|ZP_03540523.1| protein-export membrane protein SecF [Borrelia garinii Far04]
 gi|219672760|gb|EED29786.1| protein-export membrane protein SecF [Borrelia garinii Far04]
          Length = 299

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 77/300 (25%), Positives = 137/300 (45%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +   I      + F  V + + F        +  G N+GIDF   + + +   +      
Sbjct: 1   MQRVINFSKYGSNFLIVSVILTFIGLIYTFFYHGGYNWGIDFSPRVNINISIEKSDIKEN 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
               + S     +   +                  +        V+K I + +  +   N
Sbjct: 61  EIKRIFSPIYKALDVNSIFSPNENKSEFSIMVKSDIIDYAFKTEVQKTIMDELKKTFNAN 120

Query: 654 TEI-----VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            E+     +    S  L  K I+ V+ +   +LIYI +RFK  +A+ +I     DI    
Sbjct: 121 IEVLDSYFIDSSFSSTLRIKSILLVLGTFTLILIYITLRFKLSYAIASILATFHDIFFIA 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  +F IE N   + A+LT+IGYS+ND ++++DR+R N++   T  +F ++++ SI++T
Sbjct: 181 AFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVRRL-TDNTFLNVLNISISQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R+V TS+  F++V  + V+    I  F++    G++V   SS+FIA+PILL +Y    
Sbjct: 240 LSRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK 299


>gi|146311152|ref|YP_001176226.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Enterobacter
           sp. 638]
 gi|145318028|gb|ABP60175.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Enterobacter sp. 638]
          Length = 1038

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 78/569 (13%), Positives = 158/569 (27%), Gaps = 33/569 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL       P+  + ++P+  P   I           +      
Sbjct: 8   RPVFAWVIALFIVLTGLLSI-----PRLPVAQYPAVAPPGII---------ISVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D +N  +    +   S +        S        IT++F      +     +   ++ 
Sbjct: 54  PDVMNTSVVSLIEREISGVDNLLYFESSSDTTGMASITVTFKPGTDIKLAQMDLQNQIKI 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    ++N L         +++             + S    R   D++       
Sbjct: 114 VEPRLPQAVRQNGLTVEAANSGFLMMVGLKSQTGEYQEADLSDYFARNLTDELRRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP +L     +   +       N        G        G  Y
Sbjct: 174 KVQLFG-GEKALRIWLDPMKLHSHGLSVTDVLTAVSQQNVIVSPGRTGDEPAIPGQGVTY 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++S +                            R        +   L     G 
Sbjct: 233 PITVRGQLSSVEAFSQ-------------ITIKSLTSGARLKLSDIARVESGLQSYAFGI 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +   T        A L +         V          S   
Sbjct: 280 RENGMPATAAAIQLSPGANAISTASGIRSRLAELSSVLPEGMEFTVPFDTAPFVKLSIMK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+ + +   +  L+      + ++ T  ++ L G ++ + ++ G+V
Sbjct: 340 VVETFAEAMVLVFLVMLLFLHKIRCTLIPAIVAPVALLGTFTVMLLSGYSINILTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +   S   +           I    +      + + F 
Sbjct: 400 LAIGIIVDDAIVVVENVERLMEEKNLSPKEATREAMHEITPAIIGITLVLTAVFIPMGFA 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F I++ +SIL+S F A+++  A+   +++   +        S +F     
Sbjct: 460 SGSVGIIYRQFCISVAVSILLSAFLALTLTPALCATLLKPHHVGQSKGKSFSAWFNTRFH 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT 566
               F  +    V       +     L  
Sbjct: 520 TLTSFYASGLGFVLKRTGRMMMLYAALCV 548



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           IR     A+ A   L      T     L G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 362 IRCTLIPAIVAPVAL----LGTFTVMLLSGYSINILTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMA 802
               +   ++S ++   ++++E     +  ++      +PM    G   I    F I +A
Sbjct: 417 -ERLMEEKNLSPKEATREAMHEITPAIIGITLVLTAVFIPMGFASGSVGIIYRQFCISVA 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I+++A  ++ +   +   +  
Sbjct: 476 VSILLSAFLALTLTPALCATLLK 498



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 60/145 (41%), Gaps = 7/145 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++S + + + +   ++ W      +  + L +   +    +  +  ++     ++TLIG
Sbjct: 870  IVLSMLVVFMVLAALYESWSVPFAVMLVVPLGLLGAVLAVTVANMTNDVFFKVGLITLIG 929

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             S  + +++ +  R   +L     +  +    +  + L   + TS+A  + V+P+ +  G
Sbjct: 930  LSAKNAILIIEFAR---QLIHQGHNVIEATLMASKQRLRPILMTSLAFTLGVVPLMLAKG 986

Query: 792  SVI---GSFAIPMAFGIVVAASSSI 813
            +      +    +  G++     +I
Sbjct: 987  ASDSTQHAIGTGVFGGMISGTLLAI 1011


>gi|312114768|ref|YP_004012364.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311219897|gb|ADP71265.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 1050

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 79/689 (11%), Positives = 181/689 (26%), Gaps = 49/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL      L    + ++P   P             + + +  + 
Sbjct: 8   RPNFAWVIAIVISLGGLLA-----LNSLPISQYPQIAP-------------TSVRITANY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       I L+F  +   +    +V  
Sbjct: 50  PGADAQTVENSVTKVIEQGMTGIDNLDYMTATSTSSGSASIALTFTAAADPDVAQMQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ V SKL    +   +  T   +  +++          +A + +  +     D +   
Sbjct: 110 KLQLVTSKLPQIVQNTGIAVTKSSDAFLMVIGFVSTDGKMNATDLADFVYSTLNDTLKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L +       ++      N        G    R   
Sbjct: 170 PGVGATQLFGS-NYAMRIWLDPDKLAKYALMPGDIAAAIEAQNAQVSAGQLGAIPARTGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I   +            ++       
Sbjct: 229 QLNATVTMRSRL-------------QTPEQFRNIILKSDSSGSLVRLNDVAHVELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +     +   T E        L          +           
Sbjct: 276 TTSSRYNGMPAAGLAVNLATGANAISTAEAVEQSIERLSPSFPQGVKVVYPYDTTPFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+ + +   +  L+   ++ + ++ T  +L + G ++   ++
Sbjct: 336 SIQEVVKTLAEAIVLVFVVMLVFLQNIRATLIPTLAVPVVLLGTFGVLGVFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +           +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMREEGLPPKEATRKSMQEITGALIGIATVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R FA+T+  ++++S+  A+ +  A+   I+R          P   F +
Sbjct: 456 MAFFGGSVGVIYRQFAVTIVSAMILSVLVALILTPALCATILRPTTGAQTSRGPFGWFNI 515

Query: 534 IPDCIAIQF--------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +  A  +         R R +      +  +         G    ++ +G +   V  
Sbjct: 516 AFNRSATAYRSGAAGVVRRGRRFLFVFGAMILVMGFLFTRLPGSFLPMEDQGILLTSVQL 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                       L+ +    ++ +    E    V      G+          +K      
Sbjct: 576 PVGATQDRTERVLKDVTDHYLNAEKDAVEGVMSVVGFGFGGEGQNVGIAFVRLKDFEKRK 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               +          +   +    +  + 
Sbjct: 636 TKELSAAAVAGRAMMVFSRIKDARVFALA 664



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 81/256 (31%), Gaps = 9/256 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +   +  V  +    +     +      G    + ++G     ++ Q  PG S    
Sbjct: 777  MQPEDLWKWQVRNSAGTMVPFSSFSSSHWTYGSPRLERYNGSSAVEIQGQAAPGTSSGTA 836

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                                           +      + V++  +     + +   W  
Sbjct: 837  METVDALMAQLPSGFEHEWTGLSYQERLSGNQATALYAISVLVVFLC---LVALYESWST 893

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  + ++ + +   +    LFG   ++     +LT IG +  + +++ +   +     T
Sbjct: 894  PLAVMLSVPIGVLGAVLAALLFGQTNDVYFKVGLLTTIGLAAKNAILIVEFAIE---RQT 950

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
                  +   ++  + L   + TS+A  + V P+AV    G     +  + +  G++ A 
Sbjct: 951  AGKGLVEATLEAAGQRLRPILMTSLAFILGVAPLAVASGAGSGAQNAIGVGVMGGMIAAT 1010

Query: 810  SSSIFIAAPILLFIYD 825
               IF    + + +  
Sbjct: 1011 LLGIFFVPLLFITVRR 1026



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G   +FG   N   + A++  IG  V+D +VV + +     
Sbjct: 362 IRATLIPTLAVPVVLLGTFGVLGVFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERV 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  ++   KS+ E  G  +  +       +PMA +GGSV      FA+ +   ++
Sbjct: 420 MREEGLPPKEATRKSMQEITGALIGIATVLSAVFVPMAFFGGSVGVIYRQFAVTIVSAMI 479

Query: 807 VAASSSIFIAAPI 819
           ++   ++ +   +
Sbjct: 480 LSVLVALILTPAL 492


>gi|297195499|ref|ZP_06912897.1| protein-export membrane protein secD [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297152823|gb|EDY66022.2| protein-export membrane protein secD [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 571

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 107/550 (19%), Positives = 207/550 (37%), Gaps = 52/550 (9%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV-----D 61
            +IL +M+   G +                    +    LG+DL GG+ + LE       
Sbjct: 2   ALILIAMVALTGGMF----------------WAGQLTPRLGIDLAGGTTITLEAKNQPGQ 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQ 120
           E+      +      +   +   G+    ++   N  I ++       E   ++V    Q
Sbjct: 46  ENAVNETNMNTAVGIIERRVNGLGVSEAEVQTQGNSHIIVNIPKGTNSEQAREQVGTTAQ 105

Query: 121 GVNSKL-------NVDPKK---------NLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
                +          P+                 E       + +        A+ + +
Sbjct: 106 LFFRPVLTVAAGGPAAPEPSPSASTSGAPKDDKDKETATPPSGTPSPSATTQGRAVTEGL 165

Query: 165 EIIRQRIDQIGISESTIQRLGS---HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
           +           +  + +   S          P     +   +   T    +  K     
Sbjct: 166 KAPAASPSPSASTSGSPKASESPAPGESPAPTPSADPATAALEKQFTALDCTDDKARGKL 225

Query: 222 SKKGFMFGVRFLRD---SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG 278
                            +   +  +    E++G  ++ A    D +    +V + F E G
Sbjct: 226 GDNVKPTEPSVACGKNSAGQWEKYILGPAEVNGKDVDDAKGQLDQQRGMWIVTMDFTEAG 285

Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSG----KAQISGNFTIETAGILAAM 334
           A++F ++T     +   +     VL   V++    +      A+I+G+F  E+A  L  +
Sbjct: 286 AKKFQKITSRLSQQQPPMNQFAIVLDGEVVSAPQVNQTLSASAEITGSFDQESAQNLGNI 345

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           L  G+LP+         V A LG + +  G  A   GL L+V++++V Y    L+A  S+
Sbjct: 346 LSYGALPLSFEEDSVTTVTAALGGEQLKAGLIAGAIGLALVVIYLVVYYRGLSLIALLSL 405

Query: 395 FLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
            ++ ILT  +++LLG      L LP++ G ++ IG+  DS I+  ERIR+E R+ +++  
Sbjct: 406 GVSAILTYTIMTLLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERIRDEIREGRTLRP 465

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +++  + RA  T+  S+  + +A  VLF    G V+GFA T+GL+ L+ +       + +
Sbjct: 466 AVERAWPRARRTVLVSDFVSFLAAAVLFVVTVGKVQGFAFTLGLTTLLDVVVVFFFTKPV 525

Query: 511 MIFIIRYKKM 520
           M  + R K  
Sbjct: 526 MTLLARRKFF 535



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 90/266 (33%), Gaps = 10/266 (3%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              +       G  +   + +R        +    +  G++       +           
Sbjct: 274 MWIVTMDFTEAGAKKFQKITSRLSQQQPPMNQFAIVLDGEVVSAPQVNQTLSASAEITGS 333

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
            D  +   +  ++      +       +   V   +  E ++ G++   I    ++IY+ 
Sbjct: 334 FDQESAQNLGNILSYGALPL--SFEEDSVTTVTAALGGEQLKAGLIAGAIGLALVVIYLV 391

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + ++   +L A+ +L +    T     L G       NL AV   +  IG + +  +V +
Sbjct: 392 VYYR-GLSLIALLSLGVSAILTYTIMTLLGPAIGFALNLPAVCGAIVAIGITADSFIVYF 450

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      + R  ++++        + +   +F++   + V     +  FA  +
Sbjct: 451 ERIRDEIRE---GRTLRPAVERAWPRARRTVLVSDFVSFLAAAVLFVVTVGKVQGFAFTL 507

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWR 827
               ++      F   P++  +   +
Sbjct: 508 GLTTLLDVVVVFFFTKPVMTLLARRK 533


>gi|194367609|ref|YP_002030219.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Stenotrophomonas maltophilia R551-3]
 gi|194350413|gb|ACF53536.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Stenotrophomonas maltophilia R551-3]
          Length = 1049

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 147/552 (26%), Gaps = 33/552 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +      +     +    +DR+P   P                      
Sbjct: 8   RPIFAWVIAIAVS-----LLGLLAILILPVDRYPQIAPPTIT---------IRATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++ +  L        +     + ++ L FA     +    +V   LQ 
Sbjct: 54  SQTVENAVTQVIEQSQQSLDHLMYMTSTSASDGSAQVNLVFATGTNPDTAQVQVQNQLQA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    ++N L  T        +     +       + +  +  +  DQI       
Sbjct: 114 AMATLPQAVQQNGLTITKSSGSIFEVLSFTSEDGSMDNFDVANFMEARIDDQISRVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++RQ     + +       N        G +          
Sbjct: 174 NIQPIG-QEYAMRIWLDPEKMRQYALMPSDIETALQAQNTDVSAGELGGQPALKGQQLDA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +   + G           IG          
Sbjct: 233 TVTARSRL-------------HTPEQFAQVVLKADAGGSVVHLGDVATIGLGPESYDSIS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +     +        L+          V          S   
Sbjct: 280 TFNGKPSASLGIELNAGANAIAVSKAIDARLQQLQKYWPHGYTAHVAFTTTPFVTISLKE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VVITLIEAIALVVLVMYLFLQNWRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +         +   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTFEGLAPKPATLKAMGQITGALVGIVLVLTAVFLPMAFF 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F++T+  ++++S+  A++I  A+   I+                  +   
Sbjct: 460 SGVTGVIYRQFSVTIAAAMILSVLVAMTITPALCGSILHQIPKGGHPHGDHGGEPSLLGK 519

Query: 538 IAIQFMRARFWG 549
             I F       
Sbjct: 520 FFIWFNHRFERT 531



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 93/235 (39%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D            L        +++A ++ ++   +++ +  P 
Sbjct: 260 VHLGDVATIGLGPESYDSISTFNGKPSASLGIELNAGANAIAVSKAIDARLQQLQKYWPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            +++ ++ +I +   +++ +++  + W   L     + + +  T
Sbjct: 320 GYTAHVAFTTTPFVTISLKEVVITLIEAIALVVLVMYLFLQNWRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A FG   N   + A++  IG  V+D +VV + +     +    ++ +    K++ +
Sbjct: 380 FGVLAAFGYSINTLTMFALVLAIGLLVDDAIVVVENV--ERVMTFEGLAPKPATLKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V   +      LPMA + G   VI   F++ +A  ++++   ++ I   +
Sbjct: 438 ITGALVGIVLVLTAVFLPMAFFSGVTGVIYRQFSVTIAAAMILSVLVAMTITPAL 492



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 83/263 (31%), Gaps = 18/263 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +   A + V LS + S   +     +   N         +         
Sbjct: 782  RMQPQDIERWSVRNQAGQMVPLSSLISTHWTSAPAALQRYNGVSAMEITGQPAAGVSSGE 841

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +            +    +         ++        IS + + + +   ++
Sbjct: 842  AMAEIARLADTLPEGFSHAWSDMAYQEQLSGNQAPMLY------AISLLFVFLCLAALYE 895

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRK 746
             W      +  + + +   +    L G+  ++     +LT IG +  + +++  + R+ +
Sbjct: 896  SWAVPFAVMLAVPVGVFGAVLMMNLRGLNNDVYFQVGLLTTIGLAAKNGILIVEFARILE 955

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                     S R+ I +++   L   V TS+A  + VLP+      G +   S    +A 
Sbjct: 956  -----QQGKSTREAILQAVYLRLRPIVMTSLAFLMGVLPLVFATGAGSAARRSLGTGVAG 1010

Query: 804  GIVVAASSSIFIAAPILLFIYDW 826
            G V +    +F   P+   +   
Sbjct: 1011 GTVASMVLGMFFV-PLFYLLVRR 1032


>gi|109946904|ref|YP_664132.1| preprotein translocase subunit SecD [Helicobacter acinonychis str.
           Sheeba]
 gi|109714125|emb|CAJ99133.1| protein-export membrane protein SecD [Helicobacter acinonychis str.
           Sheeba]
          Length = 526

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 153/545 (28%), Positives = 274/545 (50%), Gaps = 31/545 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   + +I++      G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNFRLIVFVFALFFGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     ++    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGVSFELLDEDEAKKLDTLLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + +IR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGVIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGREEISVQLPGIKTLEEERRAKDLISRSAHLQMMAVDEEHNKDAMTMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISG+F++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGSFSVAQASDLAIALRSGAMKAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R VG  LG DSI     A++ G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIVGPSLGKDSIKTSINALIGGFILVLGFMVLYYSMAGVIACVALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+ +S+  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLREGESIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIIGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFLI 534
                
Sbjct: 521 VKNKR 525



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I  +I   I +L ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSINALIGGFILVLGFMVLYYSM-AGVIACVALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++      S    I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRE---GESIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+ + +  +G   I  FA+    GI+ +  ++I
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAI 495


>gi|332184931|ref|ZP_08386680.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Sphingomonas sp. S17]
 gi|332014655|gb|EGI56711.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Sphingomonas sp. S17]
          Length = 1075

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 56/505 (11%), Positives = 130/505 (25%), Gaps = 38/505 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++   I   G++      L    ++ +PS  P               L L +  +
Sbjct: 9   PVFAWVIALFIALFGVIA-----LRLLPIESYPSVAPP-------------SLNLAISYN 50

Query: 64  DFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                 +       +   L        +   S      +IT++F      +    +V   
Sbjct: 51  GADAEVMDRSVTAVIEKELNGVDNFLYMASTSRSNGTAQITVTFKPGTNLDVARTQVQDR 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L     +L  + +   +  T      + +   +     +  +E          +++   +
Sbjct: 111 LSRAEPRLPQEVRALGIQVTEGSAGFLEVITLSSKTGKTSPVEMGNFAENNIRNELRRID 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP +L     + ++        N+   G   G +       
Sbjct: 171 GVGDVQLFGSP-YAMRIWLDPQKLAGYNLSASEALAAVQEQNSQTAGGSIGAQP------ 223

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +    E +   +            +    I                 +        
Sbjct: 224 ----LNRTAEFTAQIITQNRFATPE---QFRQIIIRANPDGSAIRLGDVARVELGKDNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L             +  +   T E        L++         V          S
Sbjct: 277 FRLTLNGKETVGLAVQLASGANALATAEAVSARMKALQSSFPADVTWSVPFTTTPFITAS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+F+ +   +  L+    + + +      L   G ++   S+ 
Sbjct: 337 VDSVIHTLVEAMILVFLVMFLFLQNWRATLIPAIVVPIALGGACIGLLAFGFSINTLSLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+V+ IG+ VD  I+V E +      +  S   +      +    I    +  +   + +
Sbjct: 397 GMVVAIGILVDDAIVVVENVERIMSEEGLSPRRATVKAMGQITGAIIGITLVLVAVFIPM 456

Query: 478 FFFGGGAVRGFAITMGLSILISMFT 502
            FF G     +        +   F+
Sbjct: 457 AFFPGSTGGIYRQFSVTLAVSIFFS 481



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 77/225 (34%), Gaps = 8/225 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L  V                   E   L        +++A    +    K +    P 
Sbjct: 260 IRLGDVARVELGKDNYGFRLTLNGKETVGLAVQLASGANALATAEAVSARMKALQSSFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT-K 706
               +            +   I  ++ + I + + +++  + W   L     + + +   
Sbjct: 320 DVTWSVPFTTTPFITASVDSVIHTLVEAMILVFLVMFLFLQNWRATLIPAIVVPIALGGA 379

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +G  A FG   N  ++  ++  IG  V+D +VV + +     +    +S R    K++ 
Sbjct: 380 CIGLLA-FGFSINTLSLFGMVVAIGILVDDAIVVVENV--ERIMSEEGLSPRRATVKAMG 436

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVA 808
           +  G  +  ++      +PMA +    G +   F++ +A  I  +
Sbjct: 437 QITGAIIGITLVLVAVFIPMAFFPGSTGGIYRQFSVTLAVSIFFS 481



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 87/259 (33%), Gaps = 6/259 (2%)

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                   L +         V  S    ++  +   Q         + +        +   
Sbjct: 786  RMSPDDVLALRVRNQQGNMVPFSAFTKVRWQNGPQQLERYNGYPSLTVSGMAAPGQSTGT 845

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
             L  +++   E++P            +  +   + G++  +   +  L+   +   W   
Sbjct: 846  ALNAMEQIAREVLPPGMSFEWTGTAFEEKQAGGQIGLLLGLSLIVVFLLLAALYESWAIP 905

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  +  +   +   +    L G   ++     ++T+IG +  + +++ +   ++ +    
Sbjct: 906  LAVLLVVPFGVLGAVLLTILRGFSADVYFNVGLITIIGLAAKNAILIVEFAIEDQQA--- 962

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
              +  +   ++  + L   + TS+A  + ++P+ +    G +   +    +  G++ A +
Sbjct: 963  GRTPFEATVEAARQRLRPILMTSLAFILGMVPLFIASGAGAASRRAVGTGVMGGMIAATA 1022

Query: 811  SSIFIAAPILLFIYDWRAK 829
              IF      +    W A+
Sbjct: 1023 FGIFFTPVFYIAAKKWLAR 1041



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 53/537 (9%), Positives = 134/537 (24%), Gaps = 62/537 (11%)

Query: 1    MRNN-PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
            M     WL +   ++   GLL        +      P+             +G   +  +
Sbjct: 544  MSRPVRWLAVFAVVVVMTGLL------FTRVPGGFLPTED-----------QGYIFVSYD 586

Query: 60   VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI----------TLSFADSRFKE 109
                            ++  FL  +      +                  ++      ++
Sbjct: 587  AA-PGATLERTGEAITKVEKFLHAQPQVSDIVSVAGFNFFGQGQAAGISFVNLKPWEDRK 645

Query: 110  NIAD----KVTLFLQGVNSKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
               +     V   +  V S             +          +   +   +   A++Q+
Sbjct: 646  GTENNSTTLVGKTMGFVQSIPEATIFALDPPPIQALGNATGFSMKIEDRSGLGEAALQQA 705

Query: 164  MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
               I  +  Q                  QL  + D  + R L    A ++          
Sbjct: 706  QGAILAKASQNKALMGVRPEGLG--PAPQLYVDIDRIQARALGLQIADVNQTLS------ 757

Query: 224  KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
                     +            +  +  ++L               + +   +     F 
Sbjct: 758  ---------IAFGSAYANDFVREGNVLRVYLQADAPQRMSPDDVLALRVRNQQGNMVPFS 808

Query: 284  EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343
              T+         +       +  ++     G++  +    +E                 
Sbjct: 809  AFTKVRWQNGPQQLERYNGYPSLTVSGMAAPGQSTGTALNAMEQIAREVLPPGMSFEWTG 868

Query: 344  LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
                       +  +         +   +V ++L  +       L     +   V+  + 
Sbjct: 869  -------TAFEEKQAGGQIGLLLGLSLIVVFLLLAALYESWAIPLAVLLVVPFGVLGAVL 921

Query: 404  LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
            L  L G +  +    G++  IGLA  + IL+ E   E+ +  ++ F +      +    I
Sbjct: 922  LTILRGFSADVYFNVGLITIIGLAAKNAILIVEFAIEDQQAGRTPFEATVEAARQRLRPI 981

Query: 464  FDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
              +++  ++  V LF     G  + R     +   ++ +    I       I   ++
Sbjct: 982  LMTSLAFILGMVPLFIASGAGAASRRAVGTGVMGGMIAATAFGIFFTPVFYIAAKKW 1038


>gi|294664102|ref|ZP_06729497.1| export membrane protein SecF [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292606123|gb|EFF49379.1| export membrane protein SecF [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 322

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 84/282 (29%), Positives = 151/282 (53%), Gaps = 5/282 (1%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    LIP+   I FM  R   + + ++ ++ S+ ++   G NY ++F GG  +    
Sbjct: 1   MKIFPLHLIPNDTKIDFMSWRKPVLILMLVLAVASVGIIVGKGFNYALEFTGGTLVQTSF 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR---VLEMVKKKI 642
            + VD+  VR  L      +   QN  G    ++RLQ    ++        V E V+K +
Sbjct: 61  QKTVDVDQVREKLSRAGFENAQVQNARGGNEVMIRLQPHGQNNNRDDAARTVAEDVRKAV 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
           T     +T+Q  E VGP++ ++L   G+   +   +  LIYI  RF+W FA+ A  T + 
Sbjct: 121 TSDENPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALF 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+ F +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   ++++
Sbjct: 181 DLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRAL--RVEPLEVLN 238

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           +SIN+TL R+V T++  F+S L + ++GG  +   A     G
Sbjct: 239 RSINQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIG 280


>gi|220924999|ref|YP_002500301.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylobacterium nodulans ORS 2060]
 gi|219949606|gb|ACL59998.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium nodulans ORS 2060]
          Length = 1055

 Score =  171 bits (431), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 92/687 (13%), Positives = 191/687 (27%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC  G+L       P   + ++P   P               + L    
Sbjct: 8   RPVFAWVIALFICLGGILAI-----PMLPVAQYPIIAPP-------------SIALSTAY 49

Query: 63  DDF-VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
               V       +  +   L              +    +IT +FA        + +V  
Sbjct: 50  PGASVEDLYTGTTRLIEDELNGAANIQSFESASDSFGVVEITATFAPGTDPGYASVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  ++       ++ +            +     +IR  I++I   
Sbjct: 110 RLKRVEARLPAEVRQQGILVEEASAATLNIITLVSTDGSMDEVALGDFLIRNVINEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +LR L  + + ++      N        G +    + 
Sbjct: 170 PGVGRATLY-STERSLRIWVDPDKLRGLSLSASDVTKAIQNQNVQIASGAVGAQPSPAAH 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + +                       +    +                 I       
Sbjct: 229 AVNFPIL-------------VKGQMRAPEEFGAIVLRANPDGSTVRLRDVARIELGGEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +   T +        L           +      A   
Sbjct: 276 KFTTRLNGGEAAGISVTLAPDGNALETAKAIRAKMEELSQFFPSNVKWDIPYDITPAVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   ++ L+    + + ++ T  ++ L G ++ + ++
Sbjct: 336 SIKKVMMTLVEAVVLVFIVMFLFLQNIRYTLIPTIVVPIALLGTCTVMLLAGFSVNVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    N +  S   +     S+    I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMNEEGLSPKEATRKAMSQITGAIIGITLVLVAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
           + FF G      R F+I M  SI  S   A+S+  A+   +     K            F
Sbjct: 456 MAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPALCATLLKPIEKGHGHAKSGFFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
               D    ++ R   W +  S       + L+      +    +G + +       VD+
Sbjct: 516 NRFVDRQTARYGRGVAWAIAKSGRMMAIYLILVAGVAYAFVRLPEGFLPVEDQGFFTVDI 575

Query: 592 -----SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                S     L +++  +       G     +   +        T    +  K  +E  
Sbjct: 576 QTPPGSSFNRTLAAVKKVEEHLMAQPGVATVTIVNGFSFSGQGQMTSQAFVTLKDWSERG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
           P  +         K         I  +
Sbjct: 636 PDQSAAALVAGTNKALASYKDAVIQAL 662



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 97/245 (39%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +    + +   GE   +       G+++   + +    +++++  P 
Sbjct: 260 VRLRDVARIELGGEDYKFTTRLNGGEAAGISVTLAPDGNALETAKAIRAKMEELSQFFPS 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +   +         +  I+K ++ ++ + + + I +++  +   + L     + + +  T
Sbjct: 320 NVKWDIPYDITPAVKASIKKVMMTLVEAVVLVFIVMFLFLQNIRYTLIPTIVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N+  +  ++  IG  V+D +VV + +     +    +S ++   K++++
Sbjct: 380 CTVMLLAGFSVNVLTMFGMVLAIGILVDDAIVVVENV--ERIMNEEGLSPKEATRKAMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GSV      F+I M   I  +A  ++ +   +   + 
Sbjct: 438 ITGAIIGITLVLVAVFIPMAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPIEK 502



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 86/261 (32%), Gaps = 8/261 (3%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                 L           V  ++   L+      Q         VR+  +P         +
Sbjct: 777  NPSDLLNYGVRNAQGTMVPMASFADLKWSVGPAQIIGFNGYQSVRITGEPAAGYTSGEAI 836

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
              +++ + ++        T     +         ++ + +  I  L    +   W   L 
Sbjct: 837  AEMERLMEQLPKGFGYTWTGQSLQEKQAGSQATLLLALSV-LIVFLCLAALYESWSIPLS 895

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             +  + L +  ++    L  +  ++     ++T+IG S  + +++ +  R+  +  T   
Sbjct: 896  VMLVIPLGVIGSVAGVMLRDMPNDVYFKIGLITIIGLSAKNAILIIEFARELWRPGTK-- 953

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSS 812
                   ++        V TS+A    V+P+++  G+   S       +  G++ A   +
Sbjct: 954  -LVTATIEASRLRFRPIVMTSLAFIFGVVPLSIATGAASKSQQAIGTGVMGGMISATVLA 1012

Query: 813  IFIAAPILLFIYDWRAKNARI 833
            + I  P+   +     +  R+
Sbjct: 1013 V-ILVPVFFVVAMRVFQRRRV 1032


>gi|94313788|ref|YP_586997.1| acriflavin resistance protein F [Cupriavidus metallidurans CH34]
 gi|93357640|gb|ABF11728.1| multidrug transport protein, acriflavin resistance protein F
           (RND-HAE1 family), acrB [Cupriavidus metallidurans CH34]
          Length = 1081

 Score =  171 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 71/694 (10%), Positives = 183/694 (26%), Gaps = 51/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  IG +        +  +  +P  +P + +                  
Sbjct: 28  RPIFAGVLSVLIFLIGAISMF-----KLPISEYPEVVPPSVV---------VRAQFPGAN 73

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +   + +   +    +T++F      +     V   +
Sbjct: 74  PKVIAETVATPLEEQINGV--EDMLYMNSQANSDGTLTLTVTFKLGTDPDKAQQLVQNRV 131

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +L  D ++  + T        ++                   +    D++   + 
Sbjct: 132 SQAEPRLPEDVRRLGITTVKSSPDLTMVVHLVSPNNRYDMTYLRNYALINVKDRLARIQG 191

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P ++ +     + +       N      + G          
Sbjct: 192 VGQVQMFGSGDYSMRVWLNPDKIAERHLAASDVVKAIREQNVQVAAGVIGQSPSLPGTDL 251

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V  +  +                 +    I          +      +    +    
Sbjct: 252 QLSVNAQGRL-------------QTVEEFGDIIVNTSPDGAVTYLKDIARVELGASEYAL 298

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +     +      A L+A         +          S 
Sbjct: 299 RSLLDNKSAVALPIFQAPGSNAIQISDDVRKTMAELKANMPEGVDYSIVYDPTQFVRHSI 358

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++++ T  L+   G ++   S+ G
Sbjct: 359 EAVTHTLFEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFGLMHAFGFSINALSLFG 418

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +T +   V L F
Sbjct: 419 LVLAIGIVVDDAIVVVENVERNIEEGLSPKEATYKAMREVSGPIIAIALTLIAVFVPLAF 478

Query: 480 F---GGGAVRGFAITMGLSILISMFTAISIVRA--------------MMIFIIRYKKMKS 522
                G   + FA+T+ +S +IS F ++++  A               +   +     K 
Sbjct: 479 MTGLTGQFYKQFALTISISTIISAFNSLTLSPALSALLLKSHDAPKDWLTRAMDKVLGKF 538

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                        +         R  G    +   +          +  G       Q  
Sbjct: 539 FVRFNQFFRRSSDNYGRGVKGVIRRKGSVFGVYALMLVATWGVFQMVPKGFVPAQDKQYL 598

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D + +    + ++          G ++ +                  +     
Sbjct: 599 VSFAKLPDGATLDRTEDVIRRMSDIALKHPGVESAVAFPGLSINGFTNSPSAGIVFVTLD 658

Query: 643 TEIVPLSTIQNTEIVGPKISRE--LIRKGIVGVI 674
                 S   +   +   ++++   I+   + V 
Sbjct: 659 PFDKRKSKELSGNAIAADLNKQYGSIQDAFIAVF 692



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + L +   +    L   + N+      + L+G S  + +++ +  R+  
Sbjct: 920  SLTLPLAVILIVPLSLLAAMTGVWLTRGDNNIFTQIGFIVLVGLSAKNAILIVEFARE-- 977

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS A  + V+P+ V    G  +  +  + +  G+
Sbjct: 978  -LEHHGRTVVQAAIEASRLRLRPILMTSFAFIMGVVPLVVSTGAGAEMRHAMGVAVFAGM 1036

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +     +  R
Sbjct: 1037 LGVTFFGLFLTPVFYVALRLLATRGQR 1063



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 84/228 (36%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L++     +      G     +    +   +  +  + E V   I      
Sbjct: 293 ASEYALRSLLDNKSAVALPIFQAPGSNAIQISDDVRKTMAELKANMPEGVDYSIVYDPTQ 352

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + E V   +   +    +V ++               W  ++  +  + + I  T 
Sbjct: 353 FVRHSIEAVTHTLFEAIALVVLVVILFLQT-----------WRASIIPLLAVPVSIVGTF 401

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G    FG   N  ++  ++  IG  V+D +VV + + +N++     +S ++   K++ E 
Sbjct: 402 GLMHAFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEE---GLSPKEATYKAMREV 458

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            G  +  ++      +P+A      G     FA+ ++   +++A +S+
Sbjct: 459 SGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTIISAFNSL 506


>gi|50954751|ref|YP_062039.1| preprotein translocase subunit SecF [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951233|gb|AAT88934.1| SecF [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 338

 Score =  171 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 69/318 (21%), Positives = 142/318 (44%), Gaps = 14/318 (4%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                    L     +  F+  R       +I+  +  +  +   G N+ I+F+GG Q  
Sbjct: 3   SRLTQFGNDLYTGARSFAFVSKRTIWYTIAAIMVVLSILVPVLKGGFNFSIEFRGGSQFQ 62

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           + + +  D    +S L S+    +S  +  G     V+      D +++T+   +     
Sbjct: 63  ITSVQNTDTRKAQSALASVVPNAVSHVSVVGRDAVQVQT-----DQLSETQTKAVADALA 117

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     ++  +GP    ++ ++ I G+++  +   I + + F+ W  +  AI +L 
Sbjct: 118 KAYSVDDGDVSSTFIGPSWGADVTQQSIQGLVVFLLLAFIAMALYFRTWKMSASAIVSLF 177

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRD 759
            D+  T G +AL G E +   +   LT++GYS+ D VVV+D++R+N K     T  +F +
Sbjct: 178 HDLIITAGIYALVGFEVSPATMIGFLTILGYSLYDTVVVFDKIRENTKEEMDLTRRTFAE 237

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIF 814
            ++ ++N+TL RS+ T++ A + V  +        G + +   ++ +  GIVV   S++F
Sbjct: 238 SVNLAVNQTLVRSINTAVVAVLPVASILFIGAYALGAATLRDISLALLIGIVVGTYSTVF 297

Query: 815 IAAPILLFIYDWRAKNAR 832
           + AP+     +      +
Sbjct: 298 LGAPMYSQFREHEPAIRK 315


>gi|89075147|ref|ZP_01161583.1| putative protein-export membrane protein SecF [Photobacterium sp.
           SKA34]
 gi|89049101|gb|EAR54667.1| putative protein-export membrane protein SecF [Photobacterium sp.
           SKA34]
          Length = 300

 Score =  171 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 144/293 (49%), Gaps = 6/293 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           + + I     + R+    +SI   + SI  +   GLN+G+DF GG+   V  +  +  S 
Sbjct: 1   MKNWIIKNLTKLRYMTGIVSIALMVISITFICVRGLNWGLDFTGGVVSEVQMDSQITNSE 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   + +    D+     D    +++R                 + K +  +     + N
Sbjct: 61  IEPLMNAGFNQDVVVIAADEPGRWILRYAAPAKGVE-----YPEITKVLAPLHANIQVLN 115

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
           T IVGP++  EL  +G + ++++ + +L Y+  RF+W  A G++  L+ D+   +GFFA+
Sbjct: 116 TSIVGPQVGAELAEQGGLALLVTMLCILGYLSYRFEWRLAAGSLLALLHDVILAVGFFAM 175

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             +EFNLT +AA+L ++GYS+ND +V+ DR+R+ +             +++I  T  R++
Sbjct: 176 TQMEFNLTVLAAILAILGYSLNDSIVIADRIRELLIAKPK-QDIEATNNEAIVATFSRTM 234

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            TS    ++V  + + GGS +  F+I M  GI+    SSI +   +  F+   
Sbjct: 235 VTSGTTLMTVGSLWLLGGSSLQGFSIAMFIGILTGTWSSISVGTLLPEFLGLK 287


>gi|298208579|ref|YP_003716758.1| putative AcrB/AcrD family RND transport protein [Croceibacter
           atlanticus HTCC2559]
 gi|83848502|gb|EAP86371.1| putative AcrB/AcrD family RND transport protein [Croceibacter
           atlanticus HTCC2559]
          Length = 1049

 Score =  171 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/604 (11%), Positives = 160/604 (26%), Gaps = 48/604 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G+L      L    ++++P   P               + +    
Sbjct: 8   RPVLSTVVSIVIVILGIL-----GLSTLPIEQYPDIAPPT-------------IQVTATY 49

Query: 63  DDFVNGF-LQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                   L+     +   +   EG+   +     N    IT+ F      +  A  V  
Sbjct: 50  PGASAETILESVIIPIEEQINGVEGMTYITSDATNNGTANITVFFDQDVDPDIAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   N  L  +  +  + T  ++  +++           +       +    I  +   
Sbjct: 110 RVARANPLLPQEVIQTGVQTQKQQTSALMFMSVLSKNEDYNDTYIQNYLRINVIPSLQRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                     R    +     P +L       A +S      N        G     + +
Sbjct: 170 NGVGDVNVFSRQDYAMRIWLKPEKLAAYGLIPADVSAALSEQNLEASAGSLG---QNNGE 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +                       +    +                 +       
Sbjct: 227 AFTYAITYSGR-------------FKTAEQYENIVIKALDNGEYLRLNDIAKVELDAQGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +    IE        L           +          
Sbjct: 274 DSSSTTNGYPSINLAIYQTAGSNAQEIIEDIKSELTRLEKDFPEGVEAFINYDTNNFLSA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  L+   ++ +++I T   L+L G ++ L ++
Sbjct: 334 SIEKVVHTLLEAFLLVFIVVFIFLQDFRSTLIPAIAVPVSIIGTFFFLNLFGYSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +  +  +S   +     +     I    +      + 
Sbjct: 394 FAMVLAIGIVVDDAIVVVEAVHAKLDEGAKSGKKATLTAMNEISGAIISITLVMAAVFIP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPL 528
           + F  G        F +T+ ++ILIS   A+++  A+    ++         K       
Sbjct: 454 VTFVQGPTGVFYEQFGVTLIVAILISAINALTLSPALCALFLKPHNEDAQEKKGFLQRFY 513

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
             F    +    ++ R+  +      +     +        +      G +         
Sbjct: 514 RAFNRGFNATIQRYGRSLSFLYRQKWITVAILVLAGVGIWWSATTTPTGFVPTEDRGLIF 573

Query: 589 VDLS 592
           +++ 
Sbjct: 574 INVE 577



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 85/247 (34%), Gaps = 6/247 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     + L+ +       Q  D S          L   Q    ++      ++    ++
Sbjct: 252 LDNGEYLRLNDIAKVELDAQGYDSSSTTNGYPSINLAIYQTAGSNAQEIIEDIKSELTRL 311

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
            +  P                  I K +  ++ + + + I ++I    +   L     + 
Sbjct: 312 EKDFPEGVEAFINYDTNNFLSASIEKVVHTLLEAFLLVFIVVFIFLQDFRSTLIPAIAVP 371

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + I  T  F  LFG   NL  + A++  IG  V+D +VV + +   +     S   +   
Sbjct: 372 VSIIGTFFFLNLFGYSINLLTLFAMVLAIGIVVDDAIVVVEAVHAKLDEGAKSG--KKAT 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
             ++NE  G  +  ++      +P+    G        F + +   I+++A +++ ++  
Sbjct: 430 LTAMNEISGAIISITLVMAAVFIPVTFVQGPTGVFYEQFGVTLIVAILISAINALTLSPA 489

Query: 819 ILLFIYD 825
           +      
Sbjct: 490 LCALFLK 496



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 74/252 (29%), Gaps = 11/252 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +     ++   +         ++  N                   A   V E   K
Sbjct: 789  IKTGSGEMTPITQFVTLNRVYGPQTVTRFNLYNSTKVSGAANPGFSTGDALAIVQEEAAK 848

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
              +E     +  + E V       +     + ++       +       +      I +L
Sbjct: 849  LSSEYDIAFSGLSREEVSAGNQTVI-----IFMLCILFVYFLLAAQYESYLLPFSVILSL 903

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L +        + G+E N+    A++ LIG    + +++ +     ++         D 
Sbjct: 904  PLGVFGAFFTTKVLGLENNIYFQIALIMLIGLLAKNAILIVEFA---LQRRKQGEPIVDA 960

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
                    L   + TS A  + ++P+ +    G     S       G+++     +F+  
Sbjct: 961  AIDGAKARLRPILMTSFAFILGLMPLVLAKGVGAEGNRSIGSGAVGGLLIGTILGVFVIP 1020

Query: 818  PILLFIYDWRAK 829
             + +F    + K
Sbjct: 1021 ILFIFFQWLQEK 1032


>gi|294624359|ref|ZP_06703056.1| multidrug efflux transporter [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292601343|gb|EFF45383.1| multidrug efflux transporter [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1056

 Score =  171 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/613 (10%), Positives = 157/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PVFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKAVTQVIEQQLTGIDHLLYFNSSSAANGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    +         +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSENPSIDRDALNDIVGSRVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++    +  N        G     +   
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVLNQNVQFAAGSVGADPTPEGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPEQFENIILRTDNNGATVRLKDVARVTVGPSNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E  G     L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSEAVGAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVIHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A+S   A+            +    ++ D   
Sbjct: 457 SLQPGASGAIYKQFALTIAMSMGFSAFLALSFTPALCGAFLKSTHSTKKNWVYRTFDKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R+  W +    L  +C        G     + +G     V    
Sbjct: 517 DKLAHRYVGVVGHTLKRSPPWMIAFVALLVLCGFLFTRMPGSFLPEEDQGFAVAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
                        
Sbjct: 577 GATKIRTNEAFAQ 589



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLLVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         + R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 949  VEQRAA---GKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANSRHSIGTGV 1005

Query: 802  AFGIVVAA-SSSIFIAAPILLFIYDW 826
              G+V A     IFI  P+   +   
Sbjct: 1006 IGGMVFATVLGVIFI--PLFFVVVRR 1029



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 477

Query: 805 IVVAASSSIFIAAPI 819
           +  +A  ++     +
Sbjct: 478 MGFSAFLALSFTPAL 492



 Score = 39.7 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 45/527 (8%), Positives = 137/527 (25%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+ PW++   +++   G L        +      P              +G +  ++++ 
Sbjct: 533  RSPPWMIAFVALLVLCGFL------FTRMPGSFLPEED-----------QGFAVAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT----------LSFADSRFKENI 111
                          ++R+ L+K+      ++                 +       ++  
Sbjct: 575  PPGATKIRTNEAFAQMRAVLQKQPAVEGMLQIAGFSFLGSGENVGMGFIRLKPWEERDVT 634

Query: 112  ADKVTLFLQGVNSKLNVD----PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A+++   L G    +            +    +     +  Q+         I     ++
Sbjct: 635  AEQLIQQLNGAFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALINARNIVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +   +             +   +QL    D  + + +    + +               
Sbjct: 695  GKAAQKQDALVGVRPNGLENSPQLQLH--VDRVQAQSMGLDVSDIYSSIQ---------- 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                 L     N Y  E +++   +  +                 +       +   +  
Sbjct: 743  ---LMLAPVYVNDYFAEGRIKRVNMRADDQFRAGPESLRNFFTPSATATGIDGQPAMIPL 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
             N+ K         +      +     G     G+     + +   +          +  
Sbjct: 800  SNVVKAEWNYASPALNRYNGYSAVNIVGNPAPGGSSGQAMSAMEDIVNNDLPPGFGFDWS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                     G+ +      ++V   + +            ++    I +   +T ++L  
Sbjct: 860  GMSYQEIIAGNAATLLLALSVVVVFLCLAALYESWSIPVAVLLVVPIGVLGAITFSMLRG 919

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            L     L    G++  IGLA  + IL+ E   E+    +++  +        +  I  ++
Sbjct: 920  LPN--DLYFKIGMITVIGLAAKNAILIVEFAVEQRAAGKTLREATLEAAHLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               ++  + L      G  +       +   ++ +    +  +    
Sbjct: 978  FAFILGVLPLAISTGAGANSRHSIGTGVIGGMVFATVLGVIFIPLFF 1024


>gi|238753062|ref|ZP_04614516.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           rohdei ATCC 43380]
 gi|238708719|gb|EEQ00983.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           rohdei ATCC 43380]
          Length = 1041

 Score =  171 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/681 (10%), Positives = 191/681 (28%), Gaps = 47/681 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITIVGWVS-----LHVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +       L + +           +     + +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAVASPLEAQVNGVSHMLYMESTSSNNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L     +N +         ++       +    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAQVNENGISVRKRASNLLLGVSVFSPKQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP R+  L  +   +       N        G      +
Sbjct: 169 INGVGDVQVFGARDYSMRVWLDPQRMEALNVSVQDIVTALQQQNVQAAAGQIGSSPSMPN 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  ++                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLTDAQ-------------QFANVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A   P     +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLSASFPPDLAYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      + ++   +VL V+++ +   +   +   +I ++++ T A+L + G T    S
Sbjct: 336 ATLHEIAISLSLTLIVVLAVVYLFLQSMRATFIVALTIPVSLLGTFAVLYVFGYTANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +      +   +   +     S+    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLANDPELTPAAATKQAMSQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDI 525
           V +       G   R FA+T+  ++++S   A+++  A+   +++ +++ S      I+ 
Sbjct: 456 VPIAILPGIVGELYRQFAVTLSAAVILSSINALTLSPALCAVLLKRRELSSTGLFGGINR 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                             RA F    + ++                  + +G   + +  
Sbjct: 516 GLDRARDGYVGLTGRISRRAVFSIAALLLVGLATWWGYTRLPSSFLPDEDQGYFFVSLQL 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                L+  ++ ++ +     +    +              +S      + M+K      
Sbjct: 576 PDGASLNRTQTVMDEMYQQVTANTAVEDVIKITGFSLLSGNNSPNAGFAIVMLKPWGQRP 635

Query: 646 VPLSTIQNTEIVGPKISRELI 666
                + + +     I   +I
Sbjct: 636 HIDRVLSSIQANLATIPAAMI 656



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/188 (11%), Positives = 64/188 (34%), Gaps = 9/188 (4%)

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                  +         +   ++I   +  ++ +    L  +     W   L  I +++  
Sbjct: 845  PQGYSYSWSGMSWQEQQTGGQVIFIYLAALVFAY---LFLVAQYESWSIPLVVILSVVFA 901

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +   +   +  G   ++ A   ++ LIG +  + +++ +  +          S      +
Sbjct: 902  VGGAVAGLSAMGFANDVYAQIGLVLLIGLAAKNAILIVEFAK---TRREEGASIAQAAQE 958

Query: 764  SINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
               +     + T+++  + V+P+    G   +      I +  G+++A +  I     + 
Sbjct: 959  GAKQRFRAVMMTAISFILGVMPLVFASGAGAMSRQIIGITVFGGMLMATAVGILFIPALY 1018

Query: 821  LFIYDWRA 828
            L I   R 
Sbjct: 1019 LHIQRLRE 1026



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 92/249 (36%), Gaps = 5/249 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P                  + +  + + ++ I +L  +++             T+ +
Sbjct: 316 ASFPPDLAYEINYDSTLPVTATLHEIAISLSLTLIVVLAVVYLFLQSMRATFIVALTIPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +      ++      
Sbjct: 376 SLLGTFAVLYVFGYTANTLSLFAIILALTIVVDDAIVVVENV-ERLLANDPELTPAAATK 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++++  G  + T++      +P+A+     G +   FA+ ++  +++++ +++ ++  +
Sbjct: 435 QAMSQIAGPIIATTLVLMAVFVPIAILPGIVGELYRQFAVTLSAAVILSSINALTLSPAL 494

Query: 820 LLFIYDWRA 828
              +   R 
Sbjct: 495 CAVLLKRRE 503


>gi|21243243|ref|NP_642825.1| preprotein translocase subunit SecF [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21108776|gb|AAM37361.1| protein-export membrane protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 322

 Score =  171 bits (431), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 83/282 (29%), Positives = 151/282 (53%), Gaps = 5/282 (1%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    LIP+   I FM  R   + + ++ ++ S+ ++   G NY ++F GG  +    
Sbjct: 1   MKIFPLHLIPNDTKIDFMSWRKPVLILMLVLAVASVGIIVGKGFNYALEFTGGTLVQASF 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR---VLEMVKKKI 642
            + VD+  VR  L      +   QN  G    ++RLQ    ++        V E V+K +
Sbjct: 61  QKTVDVDQVREKLSRAGFENAQVQNARGGNEVMIRLQPHGQNNNRDDAARTVAEDVRKAV 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
           +     +T+Q  E VGP++ ++L   G+   +   +  LIYI  RF+W FA+ A  T + 
Sbjct: 121 SSDENPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALF 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+ F +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   ++++
Sbjct: 181 DLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRAL--RVEPLEVLN 238

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           +SIN+TL R+V T++  F+S L + ++GG  +   A     G
Sbjct: 239 RSINQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIG 280


>gi|256424159|ref|YP_003124812.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
 gi|256039067|gb|ACU62611.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
          Length = 1055

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 68/564 (12%), Positives = 166/564 (29%), Gaps = 41/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  +I  +G+L  +        + +FP+  P               + +  +
Sbjct: 7   KRPVLSIMLSLIIVLLGVLGMM-----SLPVTQFPAISPPT-------------VKVTAE 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKVT 116
                    ++     L   +    G+   +       +  I + F         A  V 
Sbjct: 49  YPGANGELLVKTVIIPLERAINGVPGMKYMTSDATNTGEANIQVVFDLGTDPNLAALNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V +KL     +  L+T+ E+   ++    +     +             + ++  
Sbjct: 109 NRIAKVINKLPPLVIREGLLTSLEQPAMLMYVNLHSTDKHTDERFLYNFADINILPELSR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P R+     +  ++       +        G    + S
Sbjct: 169 LKGIGSARILGTREYSMRIWLKPDRMLAYKISAEEVMKALNEQSLEASPGKTGESSGKRS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y+++     S                +    I                +I      
Sbjct: 229 QAFEYVMKYPGRFS-------------TKEEYENIILRANPNGELLHLKDVADIEFGSLF 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG-SLPIKLNIVEERNVGAD 355
                 L        +       + +  I+        +++          +        
Sbjct: 276 YDIYSDLNGSPSAAIVLKQYYGSNASQVIKEVKEKLEQIKSRSFPQGMDYEISYDVSKFL 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV IV+F+ +   +  L+   ++ ++++ T   +   G TL L 
Sbjct: 336 DASIEKVLHTLVEAFILVGIVVFLFLGDWRSTLIPALAVPVSLVGTFIFMQFFGLTLNLI 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IG+ VD+ I+V E +  +  +   S + +           I    +      
Sbjct: 396 TLFALVLSIGIVVDNAIVVIEAVHAKMAEEHLSPYLATKRVVHEISGAIIAITLVMAAVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F  G      R F+ITM  +I++S   A+++  A+ I +++          P++RF
Sbjct: 456 IPVAFMSGPVGIFYRQFSITMATAIILSGVIALTLTPALCIMMLKNTHGHPRKRTPINRF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISIL 555
               +    +        +   + 
Sbjct: 516 LDWFNNRFDKLTGRYTRLLRRIVN 539



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 88/233 (37%), Gaps = 6/233 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              SL     S  N       +++  Y    S     V E +++  +   P         
Sbjct: 270 EFGSLFYDIYSDLNGSPSAAIVLKQYYGSNASQVIKEVKEKLEQIKSRSFPQGMDYEISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              K     I K +  ++ + I + I +++    W   L     + + +  T  F   FG
Sbjct: 330 DVSKFLDASIEKVLHTLVEAFILVGIVVFLFLGDWRSTLIPALAVPVSLVGTFIFMQFFG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +  NL  + A++  IG  V++ +VV + +    K+    +S      + ++E  G  +  
Sbjct: 390 LTLNLITLFALVLSIGIVVDNAIVVIEAVH--AKMAEEHLSPYLATKRVVHEISGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++      +P+A   G V      F+I MA  I+++   ++ +   + + +  
Sbjct: 448 TLVMAAVFIPVAFMSGPVGIFYRQFSITMATAIILSGVIALTLTPALCIMMLK 500



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 51/441 (11%), Positives = 135/441 (30%), Gaps = 24/441 (5%)

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            +    ++ S+AG  +       ++      ++    +  S    +     +A     D  
Sbjct: 604  IDGVQSVSSLAGYEILTEGTGSNSGTCLINLKSWEERKHSSEEIIQELEEKAK----DIP 659

Query: 468  ITALIATVVLFFFGGGAVRGFAITMGLSILISMFT-AISIVRAMMIFIIRYKKMKSIDIN 526
               +         G GA  GF + +      + +    ++ R  +  + + K++ ++   
Sbjct: 660  GAVIEFFQPPAVPGYGAAGGFDLRLLDKTGTNDYKKMEAVNRDFVEALKKRKELTALFTF 719

Query: 527  PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF---------THGLNYGIDFKG 577
              + +      I     + +   +  ++      I   +          + +      + 
Sbjct: 720  YSASYPQFVLHIDNAIAQQKGVTIANAMQTLSTLIGSNYETSFIRYGRLYKVMVQAGPQY 779

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                  +    V          S  +        +    + +        S A       
Sbjct: 780  RSMPEDIMKLYVKNDHDEMVPFSTFMKMEKVYGLNEITRYNMFTSSAIKGSPAPGYSSGD 839

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWI---RFKWYFA 693
              K I E+   S  +  +I    ++++ + +G   + I  I +  +Y+ +      +   
Sbjct: 840  AIKAIQEVAQQSLPRGYDIDWGGMTKDEVGRGNEAIYIFLICLAFVYMILASQYESFMLP 899

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  + +L   +     F  L G+E N+ A   ++ LIG    + V++ +     ++ + +
Sbjct: 900  LAVVLSLPAGVFGAFLFLKLLGLENNIYAQVGMVMLIGLLGKNAVLIVEFA---VQKHQS 956

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAAS 810
              S      +         + TS A    ++P+    G   I   +     A G++    
Sbjct: 957  GESVFRSAIEGAKARFRPILMTSFAFIAGLIPLVFATGPGAIGNRTIGTAAAGGMLFGTI 1016

Query: 811  SSIFIAAPILLFIYDWRAKNA 831
              + +   +  F      K+ 
Sbjct: 1017 FGVILVPGLYYFFGKIAEKHK 1037


>gi|227495485|ref|ZP_03925801.1| preprotein translocase subunit SecF [Actinomyces coleocanis DSM
           15436]
 gi|226831032|gb|EEH63415.1| preprotein translocase subunit SecF [Actinomyces coleocanis DSM
           15436]
          Length = 369

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 134/312 (42%), Gaps = 13/312 (4%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     +   + AR   + + +   + ++  +   G+N  I+F GG Q  + +
Sbjct: 4   FAEWGNALYSGKKSYGIIEARKKWLLVGLSLILIAVAAIGIRGMNPSIEFIGGSQFTLSS 63

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +    +   + L+S  +   +     G     ++        V+   +  +        
Sbjct: 64  LKDTAQAPAEAVLKSHNLNTGTKITQLGTSGLRIQGP-----EVSVEEINSIRADLAKAY 118

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
              +   +   +GP     + +K +  ++I  + +   + I F+ W  ++ A+  L  D+
Sbjct: 119 NVEANEVDATKIGPSWGAGVTQKALQSLVIFLLLVGSLMAIYFRSWPMSVAALFALTHDM 178

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLID 762
             T GFFAL   E +   V   LT++ YS+ D VVV+DR+R+     T  T  +F ++++
Sbjct: 179 FLTAGFFALVQAEVSPATVIGFLTILAYSLYDTVVVFDRVRELTGKITAQTEFTFAEMVN 238

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            ++N+TL RS+ TS+ A + V  +        G   +   ++ +  G++    SS+FIA 
Sbjct: 239 LAVNQTLVRSINTSIVALLPVGSILFLGAILLGAGTLIDISLALFVGMIAGTLSSVFIAP 298

Query: 818 PILLFIYDWRAK 829
             L+ I + R +
Sbjct: 299 STLVIIENKRKR 310


>gi|330503450|ref|YP_004380319.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           mendocina NK-01]
 gi|328917736|gb|AEB58567.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           mendocina NK-01]
          Length = 1059

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/677 (10%), Positives = 170/677 (25%), Gaps = 33/677 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G +        Q  +  +P  +P   +                 
Sbjct: 9   QRPIFAAVLSLLILIGGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++    ++                +T++FA     +N   +V   + 
Sbjct: 55  NPKVIGETVASPLEQAIVGVEGMLYMSSQSTNDGKLTLTVTFALGTDLDNAQVQVQNRVT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +          ++            +  S        D++   +  
Sbjct: 115 RTMPTLPTEVQRLGVTVDKASPDLTMVVHLTSPDQRYDMLYLSNYAALNVKDELARLDGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++     T   +       N        G       +  Q
Sbjct: 175 GDVQLFGMGNYSLRVWLDPNKVASRGLTATDVVNAIREQNRQVAAGALGAPPADAGNSFQ 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +    I                 +          
Sbjct: 235 LSINTQGRLVTEE-------------EFENIIIRVGDNGEITRLRDIARVELGSNQYALR 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L            +   +     ++     A L+          +         GS  
Sbjct: 282 SLLNNQPAVAMPVFQRPGSNAIALSDSVRERMAELKQSFPQGMDYEIVYDPTIFVRGSIE 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ +++I T A++ L G +L   S+ G+
Sbjct: 342 AVVHTLLEAIVLVVLVVILFLQTWRASIIPLAAVPVSLIGTFAVMHLFGFSLNALSLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +       ++   +           I  + +      V   F 
Sbjct: 402 VLAIGIVVDDAIVVVENVERNIALGKTPVEATRQAMKEVTGPIVATALVLCAVFVPTAFI 461

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+T+ +S +IS   ++++  A+   +++         + +         
Sbjct: 462 SGLTGQFYQQFALTIAISTVISAINSLTLSPALSAILLKDHHAPKDRFSRVLDKLFGGWL 521

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                        G                 +  G+   G +         V     +  
Sbjct: 522 FGPFNRMFDRASSGYVGTVRRVLRGSSIAMLVYGGLLALGYLGFSSTPTGFVPQQDKQYL 581

Query: 598 LESLQIGDISFQNFDGE--KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +   Q+ D +  +      K         PG           +                +
Sbjct: 582 VAFAQLPDAATLDRTESVIKRMSEIAGKYPGVENTVAFPGLSINGFTNSPNSGIVFVALK 641

Query: 656 IVGPKISRELIRKGIVG 672
               +    L    I  
Sbjct: 642 DFDQRKDDHLSANAIAA 658



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 72/237 (30%), Gaps = 9/237 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             ++     D            +         S      +  + ++   I       +   
Sbjct: 816  KVDDSAGPDRVMHYNGFLTAEINGAAAPGYSSGQAEAAIAKLLEEELPIGMTYEWTDLTY 875

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                     I    +  +   +A L+       W   L  I  +   +   +    + GI
Sbjct: 876  QQILAGNTAI---FIFPLCVLLAFLVLAAQYESWSLPLAVILIVPTVLLAAITGVIMAGI 932

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + N+     ++ L+G +  + +++ +  +         +     + ++    L   + TS
Sbjct: 933  DNNIFTQIGLIVLVGLACKNAILLVEFAKD---KQEEGMDRVAAVLEACRLRLRPILMTS 989

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +A  + V+P+ +    G  +  +  + +  G++      + +     + I  +  K 
Sbjct: 990  IAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGMIGVTFFGLLLTPVFYVLIRGFVEKR 1046



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 92/247 (37%), Gaps = 18/247 (7%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +   +RS L +     +      G     +    +   +  +    + +  +I     + 
Sbjct: 276 NQYALRSLLNNQPAVAMPVFQRPGSNAIALSDSVRERMAELKQSFPQGMDYEIVYDPTIF 335

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              + E V   +   ++   +V ++               W  ++  +  + + +  T  
Sbjct: 336 VRGSIEAVVHTLLEAIVLVVLVVIL-----------FLQTWRASIIPLAAVPVSLIGTFA 384

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              LFG   N  ++  ++  IG  V+D +VV + + +N+ L     +  +   +++ E  
Sbjct: 385 VMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAL---GKTPVEATRQAMKEVT 441

Query: 770 GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYD 825
           G  V T++      +P A      G     FA+ +A   V++A +S+ ++  +  + + D
Sbjct: 442 GPIVATALVLCAVFVPTAFISGLTGQFYQQFALTIAISTVISAINSLTLSPALSAILLKD 501

Query: 826 WRAKNAR 832
             A   R
Sbjct: 502 HHAPKDR 508


>gi|300114489|ref|YP_003761064.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Nitrosococcus watsonii C-113]
 gi|299540426|gb|ADJ28743.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Nitrosococcus watsonii C-113]
          Length = 1059

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/643 (10%), Positives = 185/643 (28%), Gaps = 43/643 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I  +G +      L    +  FP   P               + +    
Sbjct: 9   RPKFALVISLVILLVGGIA-----LSLIPVAEFPEITPP-------------QVTVSASY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S      K+ ++F      +  A  V  
Sbjct: 51  PGANAEGVEQSVAVPIEEQVNGVEGMSYMSSTSSSDGTYKLNITFEVGTDADIAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   N++L  +  +  L T  +    +++      +    ++  S        D +   
Sbjct: 111 RVAVANTQLPQEVIRQGLTTRKQSPNMLLIVNLISPESSRDSLFLSNYASIYLQDSLARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP RL  L  T + +       N        G      + 
Sbjct: 171 AGVGDVSQFGVQDYGMRVWLDPDRLTALGLTASDVVKAIEEQNIQASAGSLGAPPFTKAP 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY ++ K  ++ +              +    I                 +       
Sbjct: 231 QFQYTLQAKGRLATVE-------------EFESIIVRARADGSLVRLKDIARLELGSQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L +      +       +     +        L     P     +      A   
Sbjct: 278 NAISKLNSQPAASVVVYQSPGANALQVADQIYAELERLATSFPPDMEYHILYDTTQAVRA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  +   LV+ V F+ +   +  L+   +I ++++ T A++ +LG +    ++
Sbjct: 338 SVQEVINTLFVTFILVVAVTFLFLADWRSTLIPVCAIPVSLVGTFAVMYVLGFSANTITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD +I+V E ++   R++      +     +     +  + +  L   V 
Sbjct: 398 FAMILAIGIVVDDSIVVVENVQRIMRESALEAREATRRAMAEITGPVIATTLVLLAVFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSR 530
           + F     G   + FA+T+ +++ IS   A+++  A+   +++    ++   +       
Sbjct: 458 VSFMPGITGRLYQQFAVTISVAVAISSLNALTLSPALCRLLLKPDSGQAYGLLRAFAWLV 517

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  + +  +  R+    + +        +        G        + ++  +  D
Sbjct: 518 NRSRNGYVRVCALMLRYLWPALLLALIFLVATVYLFLRAPSGFLPTEDKGVLMVNVQLPD 577

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            + +      +       ++  G  + +    +      A   
Sbjct: 578 GASLARTETVIDEITQMTRDTAGITDVISVTGFSILGGAASNA 620



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 69/205 (33%), Gaps = 10/205 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            E +                         EL    +V  I +   +  Y+++      W  
Sbjct: 834  EAIAALEQVAAEALPEGYRIEWTGTSKEELAAGALVIYIFALAIIFAYLFLVAQYESWTL 893

Query: 693  ALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             LG I++++  +    L    L  +  NL A   ++ LIG +    +++ +  ++     
Sbjct: 894  PLGVISSVVFALFGALLPVVVLPFLNNNLYAQIGIVMLIGLAGKSAILIVEFAKE---RR 950

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S  +    +        + T+++  + V P+      G +   S    +  G++ A
Sbjct: 951  EQGLSTHEAALAAARLRFRAVLMTALSFILGVSPLLFASGAGAASRTSVGFVVFGGMLAA 1010

Query: 809  ASSSIFIAAPILLFIYDWRAKNARI 833
                IF    + +   D R    R+
Sbjct: 1011 TVIGIFFIPVLYVLYQDIRLSVPRV 1035



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 80/200 (40%), Gaps = 8/200 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 LE +       +    + +T        +E+I    V  I+      +++    
Sbjct: 306 DQIYAELERLATSFPPDMEYHILYDTTQAVRASVQEVINTLFVTFILVVAVTFLFLA--- 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T     + G   N   + A++  IG  V+D +VV + +++ M
Sbjct: 363 DWRSTLIPVCAIPVSLVGTFAVMYVLGFSANTITLFAMILAIGIVVDDSIVVVENVQRIM 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +   +++  R+   +++ E  G  + T++      +P++   G        FA+ ++  +
Sbjct: 423 RE--SALEAREATRRAMAEITGPVIATTLVLLAVFVPVSFMPGITGRLYQQFAVTISVAV 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
            +++ +++ ++  +   +  
Sbjct: 481 AISSLNALTLSPALCRLLLK 500


>gi|262377439|ref|ZP_06070662.1| protein-export membrane protein SecF [Acinetobacter lwoffii SH145]
 gi|262307669|gb|EEY88809.1| protein-export membrane protein SecF [Acinetobacter lwoffii SH145]
          Length = 323

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 93/302 (30%), Positives = 151/302 (50%), Gaps = 3/302 (0%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              ++    D   I FM+        SIL ++ SI  + T GLN G+DF GG+   +   
Sbjct: 8   NQKQYGRPEDERIIPFMKIAMPAALFSILLTVASIFFIATKGLNLGLDFTGGVAAELNYT 67

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            PV    V   L      D   Q    E++ +VR+  Q         + + V   +    
Sbjct: 68  NPVKPEDVSKALNQAGFNDAVVQTLGSERDLMVRMPVQEDIEA--EDLTKAVTAAVQLPN 125

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
             + +   ++VG +I  EL  +    V ++ + ML+Y+ IRF++  A+GA+ +L  DI  
Sbjct: 126 NAAEVPKVDVVGGQIGNELYVRSGGAVALALLLMLVYVTIRFEFKLAMGAVLSLFHDIIV 185

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           TLG FA+    F+LT +AA+L +IG+S+ND +VV DR+R+N +         ++I+ ++ 
Sbjct: 186 TLGIFAMMQWPFDLTVLAALLAIIGFSLNDNIVVSDRIRENFRKI-RGAEPVEIINIALT 244

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ETL R+++TSM   + VL M + GG  +  F+I M  G+ V   SSI+I     L+    
Sbjct: 245 ETLRRTIHTSMTLLLVVLAMMLMGGDGLKWFSIAMFVGVFVGTYSSIYIGTAFALWRGLN 304

Query: 827 RA 828
           R 
Sbjct: 305 RQ 306


>gi|154489914|ref|ZP_02030175.1| hypothetical protein PARMER_00143 [Parabacteroides merdae ATCC
           43184]
 gi|154089356|gb|EDN88400.1| hypothetical protein PARMER_00143 [Parabacteroides merdae ATCC
           43184]
          Length = 1018

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 72/679 (10%), Positives = 183/679 (26%), Gaps = 44/679 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  ++   G++           +  FPS                 ++     
Sbjct: 10  KRPVLSTVMTIILLLFGMI-----GYKFLGVREFPSVDNPII---------SVNVTYPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +           Q   +IT+ F  S   E  A+ V   +  
Sbjct: 56  NAEVIMNQITEPLEQNINGIPGIRSLSSVSSQGSCRITVEFELSVDLETAANDVRDKVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I+     I       +E S        +++    +  
Sbjct: 116 AQRYLPRDCDPPTVSKADADATPIMQI--GIRSSKRSLMELSEIAELTVKERLQTIPNVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP ++     T   +       N            +  S     
Sbjct: 174 GVDIWGQKRYSMRLWLDPIKMAGYGITPLDVKNAVDAENVELPSGSIEGNTIDLSIRTLG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+    E                      D+     G                  +    
Sbjct: 234 LMHTATEF--------------------NDLIIKRDGDNIIRFQDVGRAEVSPEDLRSVM 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   +   +   +     + A      L+          +   N      S + 
Sbjct: 274 RKNGEPMVIDVIIPQPGANQIEIADEAYKRIEQLKKDLPEDVTVEMVYDNTRFIRASIAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++++F+ +   +  LV    I ++++    ++ + G ++ + ++  +V
Sbjct: 334 VEETIYVAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYVSGFSINVLTMLAVV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +      +   G    +  +  + +T +   + + F  
Sbjct: 394 LSVGLVVDDAIVMAENIYVRIEQGMEPKEAGIDGAKEIFFAVVSTTVTLVSVFLPIVFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + F+I +  S+ IS F A++    +   ++R ++ K         FF   + I
Sbjct: 454 GMTGRLFKEFSIVIAGSVTISSFVALTFTPMLATKLLRKRENKGWLYTKTEPFFEGMNNI 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNY-----GIDFKGGIQLGVLANRPVDLSV 593
             + + A       SI   +     +             ++ +  I + + A        
Sbjct: 514 YAKSLNAFLNHKWWSIPIVVILFGSIGYFWRTIRSELSPLEDRSSISINIRAQEGATFEF 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R   + +     +                     +          +     V    ++ 
Sbjct: 574 IRDFTDQVAAMADTLAPERQALTVRANNSNGYITVLLPDIKDRERSQMEIADVLSKNVRG 633

Query: 654 TEIVGPKISRELIRKGIVG 672
                  + ++    G   
Sbjct: 634 KTEARAFVQQQSTFGGRRA 652



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 78/244 (31%), Gaps = 6/244 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R+ +    +  +  +N +     ++  Q             + +++   ++    T
Sbjct: 257 QDVGRAEVSPEDLRSVMRKNGEPMVIDVIIPQPGANQIEIADEAYKRIEQLKKDLPEDVT 316

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++        I   +        +   + +LI       W   L  +  + + +      
Sbjct: 317 VEMVYDNTRFIRASIAEVEETIYVAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFV 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G   N+  + AV+  +G  V+D +V+ + +          +  ++       E   
Sbjct: 377 MYVSGFSINVLTMLAVVLSVGLVVDDAIVMAENI---YVRIEQGMEPKEAGIDGAKEIFF 433

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V T++      LP+    G        F+I +A  + +++  ++     +   +   R
Sbjct: 434 AVVSTTVTLVSVFLPIVFMEGMTGRLFKEFSIVIAGSVTISSFVALTFTPMLATKLLRKR 493

Query: 828 AKNA 831
               
Sbjct: 494 ENKG 497



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 69/165 (41%), Gaps = 7/165 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  +I++   + + +  +F+ +   L  + T+ L I   L F +   I  N+ +   ++ 
Sbjct: 847  MFAMILALFMIYLVLAAQFESFKDPLVVMFTVPLAIAGALIFMSYSDITMNIFSQIGIIM 906

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +     +S  + I  +  + L   + TS++  + ++P+  
Sbjct: 907  LIGLVAKNGILIVEFAN---QRQEAGLSMAEAIRSASTQRLRPILMTSISTILGLVPLVY 963

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              G          I +  G++V+   ++FI   +  FI   R   
Sbjct: 964  ASGEGAQGRIAMGIAVVGGMIVSTFLTLFIVPAMYSFISTDRQSK 1008


>gi|88608870|ref|YP_506506.1| protein-export membrane protein SecD [Neorickettsia sennetsu str.
           Miyayama]
 gi|88601039|gb|ABD46507.1| protein-export membrane protein SecD [Neorickettsia sennetsu str.
           Miyayama]
          Length = 502

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 167/522 (31%), Positives = 294/522 (56%), Gaps = 20/522 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR+          +  +   +   NF   S            +I+ GLDLRGG  +++ +
Sbjct: 1   MRSLRVKCFFLLFLFLVSAFVVWGNFSSGS----------NKKINPGLDLRGGVSIIMSI 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +   ++   L+    E+  F K++GI +  +   ++   +S +  + +EN    +  F +
Sbjct: 51  NRTGYIQEKLRRLVSEILEFAKEKGIKIKKIGIDESNQIISISLEQSEENNIAVIRDFFK 110

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             +  +     +          + +  S+  ++++    +E S+  +R+R+D+ G+ E+ 
Sbjct: 111 TSDEIVFDSIDQ------KRAYMQLSYSERYLNEIDKKLLEDSINNLRRRVDEFGVRETL 164

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           I  LG  RI I++PG  DP  L  LLG TAK+SFH V+ +      + G  FL+D  G  
Sbjct: 165 IYSLGGDRIAIEVPGLHDPEELVTLLGKTAKLSFHMVVNDT---ATILGKFFLKDKLGRN 221

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +E    ++G  L+ A+  F  +   PVV   F+  G ++  ++++ N+G+ +A+VLD 
Sbjct: 222 LPLERTPSLTGDLLDDASVAFSQRG-VPVVRFKFNAYGTKKLEQLSKANVGRAMAIVLDD 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +LTAPVI   I +G+ +ISGNF ++ A  LA +L++GSLP +L ++E+R +G  LG+++
Sbjct: 281 LILTAPVIRDPIINGRGEISGNFDVKEAKELALLLKSGSLPAELTVIEQRAIGPSLGAEA 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           I  G  A +  ++L+V FM+  YG +G+ A  ++ +N+ L +A L+LL ATLTLP IAG+
Sbjct: 341 ILLGKRASLLAMLLVVTFMLFGYGWYGVAATIALIVNLTLLVASLTLLEATLTLPGIAGL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L IG+AVD+N+L+ ER+REE ++   +  SL  GF  A +TIFD+NIT ++A +++ F 
Sbjct: 401 ILTIGMAVDANVLIFERMREEFKRTGVLRNSLMNGFEHAKATIFDANITTILAALMMIFI 460

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G G +R FA+T+ L I+ S+F++I + R ++   +  KK   
Sbjct: 461 GSGPIRSFAVTLSLGIITSVFSSIFVTRVLLEVFVLPKKPSR 502



 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 77/170 (45%), Gaps = 4/170 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  E I  G    +++ + ++ ++   + W + + A   LI+++T  +    L
Sbjct: 329 QRAIGPSLGAEAILLGKRASLLAMLLVVTFMLFGYGW-YGVAATIALIVNLTLLVASLTL 387

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 L  +A ++  IG +V+  V++++RMR+  K    +   R+ +            
Sbjct: 388 LEATLTLPGIAGLILTIGMAVDANVLIFERMREEFK---RTGVLRNSLMNGFEHAKATIF 444

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             ++   ++ L M   G   I SFA+ ++ GI+ +  SSIF+   +L   
Sbjct: 445 DANITTILAALMMIFIGSGPIRSFAVTLSLGIITSVFSSIFVTRVLLEVF 494


>gi|82701178|ref|YP_410744.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrosospira multiformis ATCC
           25196]
 gi|82409243|gb|ABB73352.1| Hydrophobe/amphiphile efflux-1 HAE1 [Nitrosospira multiformis ATCC
           25196]
          Length = 1042

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 71/555 (12%), Positives = 165/555 (29%), Gaps = 31/555 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  +I   GL+ A+P        +  P ++    +  G               
Sbjct: 10  RPIFAIVLSIVIFAAGLI-AIPLLPAGEYPEVVPPSVVVRAMYHG-------------AN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   + +  +E  + ++             + ++T++F      +  A +V   +  
Sbjct: 56  PKEIADSIAVPLEEAINSVEGIMYMKSVAGSDGSLQVTITFTPGIDPDTAAVRVQNRVAQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  D ++  + T  +    ++    +       A+     +     DQ+   +   
Sbjct: 116 ALSRLPNDVRQYGVTTQKQSPTPLMYVNLSSPDGRYDAVYLRNYMTLNIKDQLSRLKGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T + +       N        G +    S     
Sbjct: 176 NVGLYGEGDYAMRLWLDPNKLAARGLTASDVVDAVREQNVQVSAGQLGAQPSPRSADFLV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +       +         +    +      
Sbjct: 236 PINVRGRLRSEQ-------------EFGDIVLKSADDGQLVRLADVGRVELGSSDYTLHA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++       A        +      T       L A   P     V          S   
Sbjct: 283 MIDNRGSTSAGIFLTPGANSLEVARTVYAKFEELAASFPPGIEYRVVWDPNVFVRDSIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A L LLG ++   ++ G+V
Sbjct: 343 VGQTLIEAVFLVVLVVILFLQTWRASIIPLIAVPVSIIGTFAWLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +G+ VD  I+V E +     +  S   +           I    +      V + F  
Sbjct: 403 LAVGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMKEVSGPIIAIALVLCAVFVPMAFLS 462

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   ++R           +    L     
Sbjct: 463 GVTGEFYKQFAVTIAISTVISAINSLTLSPALAAKLLRGHDAPKDAPTRVLERSLGWLFH 522

Query: 539 AIQFMRARFWGVGIS 553
               +  R  G   S
Sbjct: 523 PFNRLFLRSSGKYQS 537



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 77/213 (36%), Gaps = 10/213 (4%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS----AIAM 680
             GD+  +      V  K++EI          +    +S + + +G   VI+      +A 
Sbjct: 832  IGDADPRVLSSGQVIAKLSEIATEVLPPGITLEWTDLSYQQVTQGNAAVIVFPLSIMLAF 891

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            L+   +   W   L  I  + + +   L    L G + N+     ++ L+G +  + +++
Sbjct: 892  LVLAALYESWTLPLAVILIVPVCMCAALFGIWLTGGDNNIFVQVGLVVLMGLACKNAILI 951

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
             +  R+   L        +   ++    L   V TS+A     +P+ +    G  V  + 
Sbjct: 952  VEFARE---LEIQGKDTIEAALEACRLRLRPIVMTSIAFIAGSVPLVLSQGAGSEVRYAT 1008

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             I +  G++      +F+     + +       
Sbjct: 1009 GITVFAGMLGVTLFGLFLTPVFYVALRKLARPK 1041



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T  +  L G   N   +  ++  +G  V+D +VV + + +N++
Sbjct: 365 WRASIIPLIAVPVSIIGTFAWLYLLGYSINTLTLFGLVLAVGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA      G     FA+ +A   V
Sbjct: 425 E---GLSPLAAAHQAMKEVSGPIIAIALVLCAVFVPMAFLSGVTGEFYKQFAVTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAINSLTLSPALAAKLLR 500


>gi|21243232|ref|NP_642814.1| multidrug efflux transporter [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21108763|gb|AAM37350.1| multidrug efflux transporter [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 1056

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 66/613 (10%), Positives = 157/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PVFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKAVTQVIEQQLTGIDHLLYFNSSSAANGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D    +    +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSINRDALNDIVGSRVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G     +   
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPEGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPEQFENIILRTDNNGATVRLKDVARVTVGPSNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E  G     L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSEAVGAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVIHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A+S   A+            +    ++ D   
Sbjct: 457 SLQPGASGAIYKQFALTIAMSMGFSAFLALSFTPALCGAFLKSTHSTKKNWVYRTFDKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R+  W +    L  +C        G     + +G     V    
Sbjct: 517 DKLAHRYVGVVGHTLKRSPPWMIAFVALLVLCGFLFTRMPGSFLPEEDQGFAVAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
                        
Sbjct: 577 GATKIRTNEAFAQ 589



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLLVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         + R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 949  VEQRAA---GKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANSRHSIGTGV 1005

Query: 802  AFGIVVAA-SSSIFIAAPILLFIYDW 826
              G+V A     IFI  P+   +   
Sbjct: 1006 IGGMVFATVLGVIFI--PLFFVVVRR 1029



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 477

Query: 805 IVVAASSSIFIAAPI 819
           +  +A  ++     +
Sbjct: 478 MGFSAFLALSFTPAL 492



 Score = 41.2 bits (94), Expect = 0.76,   Method: Composition-based stats.
 Identities = 45/527 (8%), Positives = 138/527 (26%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+ PW++   +++   G L        +      P              +G +  ++++ 
Sbjct: 533  RSPPWMIAFVALLVLCGFL------FTRMPGSFLPEED-----------QGFAVAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT----------LSFADSRFKENI 111
                          ++R+ L+K+      ++                 +       ++  
Sbjct: 575  PPGATKIRTNEAFAQMRAVLEKQPAVEGMLQIAGFSFLGSGENVGMGFIRLKPWEERDVT 634

Query: 112  ADKVTLFLQGVNSKLNVD----PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            A+++   L G    +            +    +     +  Q+         I     ++
Sbjct: 635  AEQLIQQLNGAFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALINARNIVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +  ++             +   +QL    D  + + +    + +               
Sbjct: 695  GKAAEKQDTLVGVRPNGLENSPQLQLH--VDRVQAQSMGLDVSDIYSSIQ---------- 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                 L     N Y  E +++   +  +                 +       +   +  
Sbjct: 743  ---LMLAPVYVNDYFAEGRIKRVNMRADDQFRAGPESLRNFFTPSATATGTDGQPAMIPL 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
             N+ K         +      +     G     G+     + +   +          +  
Sbjct: 800  SNVVKAEWNYASPALNRYNGYSAVNIVGNPAPGGSSGQAMSAMEDIVNNDLPPGFGFDWS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                     G+ +      ++V   + +            ++    I +   +T ++L  
Sbjct: 860  GMSYQEIIAGNAATLLLALSVVVVFLCLAALYESWSIPVAVLLVVPIGVLGAITFSMLRG 919

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            L     L    G++  IGLA  + IL+ E   E+    +++  +        +  I  ++
Sbjct: 920  LPN--DLYFKIGMITVIGLAAKNAILIVEFAVEQRAAGKTLREATLEAAHLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               ++  + L      G  +       +   ++ +    +  +    
Sbjct: 978  FAFILGVLPLAISTGAGANSRHSIGTGVIGGMVFATVLGVIFIPLFF 1024


>gi|221069589|ref|ZP_03545694.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Comamonas testosteroni KF-1]
 gi|220714612|gb|EED69980.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Comamonas testosteroni KF-1]
          Length = 1064

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 62/548 (11%), Positives = 155/548 (28%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V+L  ++  +GL+       PQ  +  +P  +P + +                  
Sbjct: 10  RPIFAVVLSIIMFAVGLVAI-----PQLPVGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   + +  +E  + ++             + ++  +F      +  A +V   +  
Sbjct: 56  PKEVAESVAVPLEEAINGVEGLMYMKSVAASDGSLQVVATFRPEIDPDTAAVRVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + ++  + T  +    ++            A+     +  +  D +       
Sbjct: 116 AQSRLPEEVRQFGVTTQKQASTPLMYVGLVSRDGAHDALYLRNHVTLKIKDVLARIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T  ++       N        G            
Sbjct: 176 DVGIYGAGDYAMRVWLDPHKVAARQLTAGEVIAAIREQNIQVSAGQLGAEPSAQKSDKLL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +     G +         I    +      
Sbjct: 236 SINVRGRL-------------KTAEEFGDIVLKSGEGGQVVRLADVARIELGASDYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +     E        L                      S   
Sbjct: 283 WSDTKNMAAVGIFLSPGANALGVAEQVYAAMDRLSKDLPEGVAFESVWDPTVFVRDSIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+ + +   +  ++   ++ +++I T A L LLG ++   ++ G+V
Sbjct: 343 VQSTLIEAVILVVLVVIVFLQTWRASIIPLLAVPVSIIGTFAGLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+ VD  I+V E +     +  S   +  +        I    +      V + F  
Sbjct: 403 LAIGIVVDDAIVVVENVERYIEQGHSPQEAAHLAMKEVSGPIIAIALVLCAVFVPMAFLS 462

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++        +  +    +     
Sbjct: 463 GVTGQFYQQFAVTIAISTVISAINSLTLSPALAARLLQPHGAPRDALARVIDKGMGWFFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 PFNRFFDR 530



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 73/203 (35%), Gaps = 6/203 (2%)

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +   VL  +++     +P         +  +   +     +V VI   +  L+   +   
Sbjct: 841  SSAEVLTKLQEIAQRTLPRGIELAWTDLSYQQVEQSHAAAVVFVIAVMLVFLVLAALYES 900

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W   L  I  + + I   L    L G + N+     ++ L+G +  + +++ +  R+   
Sbjct: 901  WTLPLAVILIVPVCICAALFGVWLAGGDNNVFVQVGLVVLMGLACKNAILIVEFARE--- 957

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
            L     +  D   ++    L   V TS+A     +P+ +    G  V  +  + +  G++
Sbjct: 958  LEMRGSATVDAALQACRLRLRPIVMTSIAFIAGAVPLLIGSGAGSEVRAATGVTVFSGML 1017

Query: 807  VAASSSIFIAAPILLFIYDWRAK 829
                  +F+     + +     +
Sbjct: 1018 GVTLFGLFLTPVFYVTLRRLSGR 1040



 Score = 43.1 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 76/198 (38%), Gaps = 9/198 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 ++ + K + E V   ++ +  +      + +    I  VI+  + +++++    
Sbjct: 307 EQVYAAMDRLSKDLPEGVAFESVWDPTVFVRDSIKAVQSTLIEAVILVVLVVIVFLQTWR 366

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + I  T     L G   N   +  ++  IG  V+D +VV + +    
Sbjct: 367 ASIIPL---LAVPVSIIGTFAGLYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENV---E 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +      S ++    ++ E  G  +  ++      +PMA   G        FA+ +A   
Sbjct: 421 RYIEQGHSPQEAAHLAMKEVSGPIIAIALVLCAVFVPMAFLSGVTGQFYQQFAVTIAIST 480

Query: 806 VVAASSSIFIAAPILLFI 823
           V++A +S+ ++  +   +
Sbjct: 481 VISAINSLTLSPALAARL 498


>gi|91200612|emb|CAJ73662.1| similar to AcrB family multidrug efflux pump protein [Candidatus
           Kuenenia stuttgartiensis]
          Length = 1078

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 153/535 (28%), Gaps = 32/535 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +    + +++  +I  +G L        Q  + +FP   P               +    
Sbjct: 6   LHRPIFAIVISLVIVFMGGLSI-----TQLPISQFPEIAPTTV---------NIFIAYPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFL 119
              D +     +  +   + ++             +  I + F           +V   +
Sbjct: 52  SNADVLVKSTLIPLETAINGVQGMRYIASDATSAGEATIRIIFEPGTDPNQAVIRVKTRV 111

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V   L    ++  ++ T  +   ++      +   +           + I +I     
Sbjct: 112 DQVMPLLPPLVQREGVIITPIQPSMLMYVNLYSEDENTDEKLLYNYAYTKMIPEIQRING 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +     P R+R    +  ++       +   +    G      +   
Sbjct: 172 IAMAQILGSRKYAMRIWLKPDRMRAYNISAEEVMKSMSEQSIIARPGRLGQSSGIHAQSM 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           +Y++  +                 K  +    I          +     N+         
Sbjct: 232 EYVLTYQGR-------------YNKPEQYGNIIIRANEKGEILYLKDIANVELGSEFFDI 278

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +        +       +    I+        L+A   P     +          S 
Sbjct: 279 YSNIDGHPAASIVLKQTVGSNAKEVIKQVKAKLKELKAEFPPKMDYKISYDVSQFLSASI 338

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV +V+F+ +   +  L+   ++ +++I     +  +G ++ L ++  
Sbjct: 339 EQVMHTLRDAFILVALVVFIFLGDWRSTLIPTLAVPVSLIGAFFFMQFIGLSINLVTLFA 398

Query: 420 IVLGIGLAVDSNILVNERIREENRKN----QSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +VL IG+ VD  I+V E +  +  K      +    +    S A   I        I   
Sbjct: 399 LVLAIGIVVDDAIVVVEAVHAKMEKENLSPYNATQQVMREISGAIIAITLVMTAVFIPVS 458

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            L    G   R F+ITM  SI+IS   A+++   +   I++    K    +P+  
Sbjct: 459 FLSGPVGVFYRQFSITMAASIVISGIVALTLTPVLCAIILKNTHGKPRKRSPIKW 513



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 76/248 (30%), Gaps = 16/248 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +  V  S      ++    +I+  N                   A   + E+ ++ + 
Sbjct: 792  KYDEMVPYSSFMKMKKTQGPNEITRYNLYNSAAIRGFPARGHTTGEAIQAIREVAEEVLP 851

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTL 700
             I      +           E I       I + + + +Y+ +      +   L  I +L
Sbjct: 852  -IGYDIAWEGLSFDEAARGNEAIY------IFAIVLIFVYLVLAAQYESFVLPLAVIFSL 904

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             + I  +     L G+  ++ A   ++ LIG    + V++ +   +N   +    +  D 
Sbjct: 905  PIGIFGSFLLLKLTGLANDVYAQVGMIMLIGLLTKNAVLIVEFAVQN---HHQGATIIDA 961

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMAFGIVVAASSSIFIAA 817
              +         + TS A    ++P+    G   I   +       G+++     + +  
Sbjct: 962  AIEGARMRFRPILMTSFAFCAGLIPLVTATGPGAIGNRTIGSSSLGGMLIGTVFGVIVIP 1021

Query: 818  PILLFIYD 825
             +      
Sbjct: 1022 GLYYIFGK 1029


>gi|221215623|ref|ZP_03588585.1| OqxB [Burkholderia multivorans CGD1]
 gi|221164452|gb|EED96936.1| OqxB [Burkholderia multivorans CGD1]
          Length = 694

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 76/579 (13%), Positives = 166/579 (28%), Gaps = 37/579 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G +        +  +  +P  +P + +          H       
Sbjct: 10  RPIFAGVLSVLIVLMGTIAIF-----RLPIAEYPQVVPVSVVV---------HAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFL 119
              V   +    +E  + +  E +     +   +    +T++F      +   + V   +
Sbjct: 56  AKTVAETVSSPIEESVNGV--ENMLYMQSQANGDGNMYLTVTFRLGTDPDKAQELVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +L  D ++  + TT       +  Q             S   I    D++     
Sbjct: 114 SQALPRLPEDVQRLGVTTTKSSPNITLAVQLVSPNGRYDVNYLSNYAIINVKDRLERIPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    +P  + Q   T A++       N        G          
Sbjct: 174 VGQVRLWGPGGYAMRVWLNPQAVAQRELTAAEVVEAVRKQNIQVSAGSIGAAPAPKGTAV 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q+ V  +  +                 +    +                 +         
Sbjct: 234 QFSVTAQGRL-------------RTPEEFGNIVVKTSADGGITRLHDVARVELASEDYGI 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L    +           +     +        L+          +    V A   S 
Sbjct: 281 RALLNNKAVLPIAVMEAPGANAFDIEKNVQATMEELKKNFPEGIEYGMTFDPVKAVRSSV 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+F+ +   +  ++   ++ ++++ T   L  LG ++   S+ G
Sbjct: 341 DSVLHTLFEAIALVVLVVFLFLHTWRASIIPLLAVPVSIVGTFGCLLALGFSINTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +        S   +           I    +T     V L F
Sbjct: 401 MVLAIGIVVDDAIVVVENVERNMAAGLSAKDATYQAMREVSGPIIAIALTLSAVFVPLAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLI 534
                G   + FA+T+ +S +IS   ++++  A+   +++ +  K+  +       F   
Sbjct: 461 LSGLTGQFYKQFAVTISVSTVISAINSLTLSPALSALLLKGESEKTDWLSRWMHKTFGRQ 520

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
                  F R   W              ++  +GL  G 
Sbjct: 521 FHAFNRFFDRGSNWYARGVSSLLGRKTIIMVVYGLLVGA 559



 Score = 39.7 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 54/124 (43%), Gaps = 9/124 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T G     G   N  ++  ++  IG  V+D +VV + + +NM    
Sbjct: 371 PL---LAVPVSIVGTFGCLLALGFSINTLSLFGMVLAIGIVVDDAIVVVENVERNMAA-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             +S +D   +++ E  G  +  ++      +P+A      G     FA+ ++   V++A
Sbjct: 426 -GLSAKDATYQAMREVSGPIIAIALTLSAVFVPLAFLSGLTGQFYKQFAVTISVSTVISA 484

Query: 810 SSSI 813
            +S+
Sbjct: 485 INSL 488


>gi|254470773|ref|ZP_05084176.1| multidrug efflux RND transporter MexF [Pseudovibrio sp. JE062]
 gi|211959915|gb|EEA95112.1| multidrug efflux RND transporter MexF [Pseudovibrio sp. JE062]
          Length = 1062

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 66/520 (12%), Positives = 148/520 (28%), Gaps = 33/520 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  +G +           + ++P+  P                     
Sbjct: 8   RRPRLAMVISILIVVVGAISIF-----SIPVSQYPTIAPPTVQ---------VSATYIGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V   +    +   + +        S        +T+ F  +   +  A  V   + 
Sbjct: 54  DALTVEESVGQPIEGAVNGVDGMRYMKSSSSSDGTYSLTVYFDLTTNPDINAVNVQNRIS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + SKL  + +   +  T +    +              +  S  +    +D++      
Sbjct: 114 TIESKLPQEVRDQGVNVTKKAGDLLQAISFYSPDQTHDGLFISNYVTINIVDELKRIPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP +LR L  T   +       N        G   L      Q
Sbjct: 174 GDASVFGAQDYSMRIWLDPVKLRALNLTAEDVIAAVQSQNKQAAVGRIGAAPLAADQQLQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  K  ++ +              +    +                 +    A     
Sbjct: 234 LTVTAKGRLNTVE-------------EFQNIVLRANPDGSVVHLSNVARVELSSASFDVL 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +     E      A L          I             S
Sbjct: 281 AEYNQQPTAMIGIYLSPGANAVAVSEAVNERIAYLAERFPEDLTYISVFDTSLFVNEMIS 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV IV+++ +   +  L+   ++ +++I  +A+  ++G +    S+  +
Sbjct: 341 KVIHTLLEAFVLVTIVVYVFLGKFRATLIPLIAVPVSIIGAVAVAYMMGYSANTISLLAL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           VL IG+ VD  I+V E +     ++       +         + +  + +  L   V + 
Sbjct: 401 VLAIGIVVDDAIIVVENVERIMHEHPDLTPAQATSKAVGEIAAPVLATTLVLLSVFVPVA 460

Query: 479 FFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFII 515
           F  G +    R FA+++  +++IS   A+S+  A+   ++
Sbjct: 461 FLPGSSGVLFREFAVSISAAMVISTINALSLSPALCAILM 500



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 93/241 (38%), Gaps = 5/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V     S    D+  +        +        ++VA +  +      + E  P 
Sbjct: 262 VHLSNVARVELSSASFDVLAEYNQQPTAMIGIYLSPGANAVAVSEAVNERIAYLAERFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                +         E+I K I  ++ + + + I +++   K+   L  +  + + I   
Sbjct: 322 DLTYISVFDTSLFVNEMISKVIHTLLEAFVLVTIVVYVFLGKFRATLIPLIAVPVSIIGA 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +    + G   N  ++ A++  IG  V+D ++V + + + +      ++      K++ E
Sbjct: 382 VAVAYMMGYSANTISLLALVLAIGIVVDDAIIVVENV-ERIMHEHPDLTPAQATSKAVGE 440

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                + T++      +P+A   GS       FA+ ++  +V++  +++ ++  +   + 
Sbjct: 441 IAAPVLATTLVLLSVFVPVAFLPGSSGVLFREFAVSISAAMVISTINALSLSPALCAILM 500

Query: 825 D 825
            
Sbjct: 501 K 501



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 66/168 (39%), Gaps = 9/168 (5%)

Query: 668  KGIVGVIISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
             G   +++    +  Y   + +   W   +  + ++   +   L    +FG+ F+L A  
Sbjct: 867  AGQTALVLGLAFLFAYLFLVALYESWNTPIPVLLSVAPALAGALLSLWIFGLAFDLYAQI 926

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ LI  +  + +++ +   +        +   +   +         + TS+A    ++
Sbjct: 927  GMVILIALAGKNAILMNEFSLE---KRIDGMGLYESAIEGARLRFRPVMMTSLAFSAGLV 983

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            P+ +    G   + +  +P+  G++ +A+  IF+   + +     R K
Sbjct: 984  PLVIASGPGAGAMVAVGVPVLAGMLFSATIGIFLIPTLYVSFQWMREK 1031


>gi|108563924|ref|YP_628240.1| preprotein translocase subunit SecD [Helicobacter pylori HPAG1]
 gi|107837697|gb|ABF85566.1| protein-export membrane protein [Helicobacter pylori HPAG1]
          Length = 525

 Score =  170 bits (430), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 157/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNARLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALL----- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L +       +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 106 -----LELQGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKDLISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLPDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM + Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMALYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREALRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMALYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREALRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|312898606|ref|ZP_07757996.1| putative ATP synthase F0, A subunit [Megasphaera micronuciformis
           F0359]
 gi|310620525|gb|EFQ04095.1| putative ATP synthase F0, A subunit [Megasphaera micronuciformis
           F0359]
          Length = 1050

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 64/687 (9%), Positives = 175/687 (25%), Gaps = 44/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   G+L  +        + ++P   P                +     
Sbjct: 9   RPIFAIVISLVISIAGILSII-----TLPVSKYPKVTPPQVR---------VSAMYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +     +        +        + + +     ++         +  
Sbjct: 55  AEVVGTTIASVIERQMMGVDDLDYMESTSSDNGMYSLNVQYKSGSNEDMDTVNTQNRVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++S L  +     +        + ++                    +  +D +       
Sbjct: 115 ISSTLPTEVTSTGVTVQKSSNSTAMVFSLVSPNGTYDGTFMKNYATQYFMDALKSVNGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++  L  T   +       N+       G +        QY
Sbjct: 175 TVQEFGA-DYAMRIWLDPLKMSVLQVTPTDVITAIRTQNSQAAVGTIGAQPSPTDQAYQY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +S                +    I                 +           
Sbjct: 234 TLRANGRLSTAD-------------EFGNVIIRTNKDGSAVRVKDIAKVELGSKSYDVFG 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         + S  A  +    +          +          V   +      S   
Sbjct: 281 LYKGNPSAIFMVSLSAGANAMQAVSGVRKALEEAKKNFPSDMEYKVIYDSTNFVRESIKE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++++ +  G+  L+   ++ ++++ T AL  +L  T+   ++  +V
Sbjct: 341 VIETFIEALLLVALIVYLFLQSGRSTLIPLIAVPVSLLGTFALFQVLDFTINTLTLFAMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +  E + N      +  +      + +           V + F 
Sbjct: 401 LAIGLLVDDAIVVIEAVEYEIKYNNKKPKEATIIAMENVQNPVIGVACVLAAVFVPVSFL 460

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----------KMKSIDIN 526
            G +    R FA+T+ +S+ IS F A+++  A+   +++               +  +  
Sbjct: 461 SGMSGILYRQFALTIAISVAISAFVALTLTPALCATMLKVHKPTESAKGIEVFFEKFNEY 520

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +A   +  ++    + I+ ++  +            +  G   + +   
Sbjct: 521 FDKFINWYGKRLAHLQLHLKWVVAFLVIISAVTGLLFTRIPTGFVPSEDNGFAMVDITLP 580

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +        +                +       G       V   +        
Sbjct: 581 EGTSQTETEKVARKVGTWVQQQPGVKDAMEIVGFGMLAGGQKSNAAVVFVTMDDWSERKT 640

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
              +I             + +  ++ +
Sbjct: 641 KDLSIDTLVGKAMGFGNAIPQATVIAI 667



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/361 (9%), Positives = 99/361 (27%), Gaps = 10/361 (2%)

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           S             + G  ++ +A T      +     +  V+           +  + +
Sbjct: 136 STAMVFSLVSPNGTYDGTFMKNYA-TQYFMDALKSVNGVGTVQEFGADYAMRIWLDPLKM 194

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           + L                    G   +                           + +  
Sbjct: 195 SVLQVTPTDVITAIRTQNSQAAVGTIGAQPSPTDQAYQYTLRANGRLSTADEFGNVIIRT 254

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           N+      V+   +              + N                + +  V+K + E 
Sbjct: 255 NKDGSAVRVKDIAKVELGSKSYDVFGLYKGNPSAIFMVSLSAGANAMQAVSGVRKALEEA 314

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV---IISAIAMLIYIWIRFKW-YFALGAITTLI 701
                      V    +  +       +   I + + + + +++  +     L  +  + 
Sbjct: 315 KKNFPSDMEYKVIYDSTNFVRESIKEVIETFIEALLLVALIVYLFLQSGRSTLIPLIAVP 374

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T   F +     N   + A++  IG  V+D +VV + +   +K        ++  
Sbjct: 375 VSLLGTFALFQVLDFTINTLTLFAMVLAIGLLVDDAIVVIEAVEYEIKYNNKK--PKEAT 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAP 818
             ++       +  +       +P+  + G S I    FA+ +A  + ++A  ++ +   
Sbjct: 433 IIAMENVQNPVIGVACVLAAVFVPVSFLSGMSGILYRQFALTIAISVAISAFVALTLTPA 492

Query: 819 I 819
           +
Sbjct: 493 L 493



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 54/139 (38%), Gaps = 5/139 (3%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      + ++   +     F  L     N+     +L +IG +  + +++ +  +  +
Sbjct: 895  SWKVPFAVLFSVPTGLFGASLFVYLLNQTNNIYFQIGILAVIGLAAKNAILIIEYAK--V 952

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            ++    +       ++    L   V TS+A  +  +P+A+  G+   S     I + FG 
Sbjct: 953  RVDERGMDVVSAAIEAAKIRLRPIVMTSLAFVMGCIPLAIASGAGAASRVTMGITVVFGT 1012

Query: 806  VVAASSSIFIAAPILLFIY 824
             VA    +FI   + + I 
Sbjct: 1013 SVATILGVFIIPMLFIIIE 1031


>gi|308187498|ref|YP_003931629.1| transport protein yegO [Pantoea vagans C9-1]
 gi|308058008|gb|ADO10180.1| Putative transport protein yegO [Pantoea vagans C9-1]
          Length = 1024

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 71/620 (11%), Positives = 167/620 (26%), Gaps = 44/620 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATTLLTLAIALAGML-----GFRLLPVAPLPQVDFPVIV---------ISASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +      +I L F   R     A  V   +   
Sbjct: 56  PEIMASSVATPLERSLGRIAGVSEMTSTSSLGSTRIILVFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +     +  +       Q   ++   E    
Sbjct: 116 QSLLPTGMPSRPTYRKVNPSDAPIMI-MTLTSDTYNPGQLYDYASTQLAQKLSQIEGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  +          R        
Sbjct: 175 VTVGGSSLPAVRVALNPQALFNQGVSLDAVRTAISNANQRRPQGALDDAQQRWQLRTNDA 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++                      +    +                 +   +  V +  +
Sbjct: 235 LQTA--------------------REYQPLVVHYNNGAAVKLSDVATVEDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +     + +   T++       +L           + +        S    
Sbjct: 275 SRGKPAVLLLIRKTPEANVIDTVDRIRAEMPLLHEVIPAAIDLQIAQDRSPTIRASLHEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQSLLIAVALVILVVFVFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHVEAGMKPLAAALKGVREVGFTVLSMSLSLVAVFLPLLMIGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP------LSRFFL 533
             G     FAIT+ +SI+IS+F +I++   M  ++++    +S           ++    
Sbjct: 455 LIGRFFSEFAITLSVSIVISLFISITLTPMMCAYLLKPHGPRSQPRRRGAGRLLMAIQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               + +    AR+  +       +     +            G +   + A++ +    
Sbjct: 515 YGRSLNVVLNHARWVMLLFFATIFLTGWLFVHIPKTFMPEQDTGRLSGFISADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDG 613
           +RS L+       +    D 
Sbjct: 575 MRSKLQDFMEIVGADPAVDS 594



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 87/233 (37%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V +  +S+Q    +  +       L+  +    + +     +      + E++P 
Sbjct: 254 VKLSDVATVEDSVQDVRNAGMSRGKPAVLLLIRKTPEANVIDTVDRIRAEMPLLHEVIPA 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKT 707
           +             R  + +    ++I+   +++ +++  +     L     + + +  T
Sbjct: 314 AIDLQIAQDRSPTIRASLHEVEQSLLIAVALVILVVFVFLRSGRATLIPAVAVPVSLIGT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N  ++ A+    G+ V+D +VV + +    +     +       K + E
Sbjct: 374 FAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---ARHVEAGMKPLAAALKGVRE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
                +  S++     LP+ + GG +      FAI ++  IV++   SI +  
Sbjct: 431 VGFTVLSMSLSLVAVFLPLLMIGGLIGRFFSEFAITLSVSIVISLFISITLTP 483



 Score = 39.7 bits (90), Expect = 2.5,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 90/221 (40%), Gaps = 12/221 (5%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   + V+ ++  E +++ +T I   S+++ +     ++ ++     +  ++ +  A
Sbjct: 803  TISFNLPEGVSLSQASEAIERTMTAIGVPSSVRGSFAGTAQVFQQSQSSQLWLMLAAIAA 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  +L LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDTPFSLIALIGILLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW------GGS 792
            ++ D   +  +     +S R+ I ++        + T      ++            G  
Sbjct: 923  MMVDFALEAERNGQ--LSAREAIFQACLLRFRPIMMT---TLAALFGALPLVLSSGDGAE 977

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +     I +A G+V++   +++    + L +   R +   +
Sbjct: 978  LRQPLGITIAGGLVMSQLLTLYTTPVVYLMMDKLRRRKRPL 1018


>gi|33865591|ref|NP_897150.1| preprotein translocase subunit SecF [Synechococcus sp. WH 8102]
 gi|33632761|emb|CAE07572.1| preprotein translocase subunit [Synechococcus sp. WH 8102]
          Length = 326

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 55/181 (30%), Positives = 100/181 (55%), Gaps = 5/181 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           Q+ + +GP + R+L+R  ++ ++++   + +YI  R+   +A  A+  L  D+    G F
Sbjct: 146 QSVDTIGPSLGRQLLRSTLISLVVAFSGIALYISFRYDGRYAFLALVALAHDVLIVAGVF 205

Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A  G+    E +     A+LT+ GYSVND VVV+DR+R+  +     +   + +D++++ 
Sbjct: 206 AWLGLLMQLEVDSLFAVALLTIAGYSVNDTVVVFDRIRERARDGA-GLGLSEQVDQAVSA 264

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R+ YTS    + +L +  +GG+ +  FAI +A G+VV + SSI +A  +L       
Sbjct: 265 TLTRTFYTSGTTLLPLLALIFFGGATLYWFAIALALGVVVGSWSSIALAPSLLTLWEPRA 324

Query: 828 A 828
            
Sbjct: 325 E 325


>gi|188991193|ref|YP_001903203.1| preprotein translocase subunit SecF [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167732953|emb|CAP51149.1| Protein-export membrane protein subunit [Xanthomonas campestris pv.
           campestris]
          Length = 322

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 86/276 (31%), Positives = 152/276 (55%), Gaps = 5/276 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIP+   I FMR R   + + ++ ++ S+ ++   G NY ++F GG  +     + VD+
Sbjct: 7   HLIPNDTKIDFMRLRKPVLILMLVIAVASVGVIVGKGFNYALEFTGGTLVQTSFQKTVDV 66

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD---SVAQTRVLEMVKKKITEIVPL 648
             VR  L      +   QN  G    ++RLQ +        A T V E V+K ++     
Sbjct: 67  DQVREQLSKAGFENAQVQNARGGNEVMIRLQAREQHNNRDDAATTVAEEVRKAVSTEQNP 126

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           +T+Q  E VGP++ ++L   G+   +   +  LIYI  RF+W FA+ A  T + D+  T+
Sbjct: 127 ATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALFDLLVTV 186

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   +++++SIN+T
Sbjct: 187 AFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRAL--RVEPLEVLNRSINQT 244

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           L R+V T++  F+S L + ++GG  +   A     G
Sbjct: 245 LSRTVITAVMFFLSALALYIYGGESMEGLAETHMIG 280


>gi|154252447|ref|YP_001413271.1| acriflavin resistance protein [Parvibaculum lavamentivorans DS-1]
 gi|154156397|gb|ABS63614.1| acriflavin resistance protein [Parvibaculum lavamentivorans DS-1]
          Length = 1024

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 72/620 (11%), Positives = 178/620 (28%), Gaps = 44/620 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  ++  +GL+        +  +  +P+                   V    
Sbjct: 9   RRPVFATVVSLILMLLGLVS-----YDRLSVREYPAIDEPVVT---------VTTVYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + ++   +   + R  ++++T  F      +  A  V   +  
Sbjct: 55  SASVVEREVTQPLEDSMAGIEGIEVLSSASRPEESQVTARFTLETDPDVAASDVRDRVGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D ++ ++         I+      D     A+E +  + R   D++       
Sbjct: 115 ARGLLPDDVEEPIIAKVEADAQPIMYIAFKSD--RMSALEITDYLDRIVTDRLQNQPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    D  RL     T   +       N               +   + 
Sbjct: 173 QVSIFGGREYSMRIWIDRLRLAAYNLTVQDVENAIRAQNAEIPSGRIESLDREFTVLAKT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +   +I   E    +        +    A +    
Sbjct: 233 ALQTP--------------------EQFENIVVKEADGFQVRLAQVARVEVAAADIRRSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +              L         + V          S   
Sbjct: 273 TYNGETSISLGVVKQATANPLEVAAGVRRALDDLAPTLPVGMSSAVGYDTSIFIAESIKS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +   +   +   +I +++I + A++ +LG ++   ++  +V
Sbjct: 333 VYETIGEAIVLVVLVIFVFLRTLRASFIPVVTIPISLITSFAIMLMLGFSINTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I     +  + F +   G       +    +T       + F  
Sbjct: 393 LAIGLVVDDAIVMLENIYRHIEEGMTPFQAAITGSKEITFAVIAMTLTLAAVYAPVGFAE 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLSRFFL 533
           G   +    FA+T+  ++++S F A+++   +   ++R+     +  + +          
Sbjct: 453 GRTGKLFLEFALTLAGTVIVSGFVALTLTPMLCSKLLRHETSEGRVQRWLGRQLDRIDGA 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R      +I+   C             I+ +G + +   A +   L  
Sbjct: 513 YKRSLERALSMTRVVVGVAAIIALSCVGLFFLLQQELAPIEDRGTLLVVGQAPQGATLEF 572

Query: 594 VRSNLESLQIGDISFQNFDG 613
                + ++   +      G
Sbjct: 573 SARYAKQIESIYVDIPEVAG 592



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 78/242 (32%), Gaps = 9/242 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
               L +L     S       +   +R      +      + + +         +      
Sbjct: 772  MVQLSNLLTVSESVAPNSLNRFNQLRAATISANLAPGYSMGQALSFLEDTAARILPSNAQ 831

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
              V  ++   +   G + V      + IY+ +  ++   +  +  L+       G   L 
Sbjct: 832  TDVDGQLREFVKSSGAIAVTFVLALLFIYLVLAAQFESFVDPLIILVSVPLSIAGALLLL 891

Query: 715  GIEFNLTAVA---AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             +      +     ++TL+G      +++ +    + +L     S  D + ++    L  
Sbjct: 892  FLTNTTLNIYSQVGLITLVGLISKHGILIVEF---SNQLREKGRSVYDAVVEAAGLRLRP 948

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + T+ A  +  LP+A+    G     S  + +  GI      ++F+   + L I   R 
Sbjct: 949  ILMTTGAMVLGALPLALADGAGAESRRSIGLVIVGGISFGTLLTLFVVPTVYLLIAGARE 1008

Query: 829  KN 830
            + 
Sbjct: 1009 RR 1010



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 17/147 (11%), Positives = 50/147 (34%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
              +   + T+ + +  +     + G   N   + A++  IG  V+D +V+ + +    +
Sbjct: 355 LRASFIPVVTIPISLITSFAIMLMLGFSINTLTLLAMVLAIGLVVDDAIVMLENI---YR 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                ++          E     +  ++       P+    G        FA+ +A  ++
Sbjct: 412 HIEEGMTPFQAAITGSKEITFAVIAMTLTLAAVYAPVGFAEGRTGKLFLEFALTLAGTVI 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           V+   ++ +   +   +        R+
Sbjct: 472 VSGFVALTLTPMLCSKLLRHETSEGRV 498


>gi|224534512|ref|ZP_03675088.1| protein-export membrane protein SecF [Borrelia spielmanii A14S]
 gi|224514189|gb|EEF84507.1| protein-export membrane protein SecF [Borrelia spielmanii A14S]
          Length = 299

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 72/300 (24%), Positives = 130/300 (43%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +   I      +    V + +          +  G N+GIDF   + + +   +      
Sbjct: 1   MQRVINFLKYGSNVLIVSVILTLIGLIYTFFYHGGYNWGIDFSPRVNINLSIEKSDIKEN 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKITEIVPL 648
               + S     +   +                  +            ++ +        
Sbjct: 61  EIKKIFSPIYKALEVNSIFSSNKNKSEFSIMVKSDIIDYAFKTEVQKTIIDELKKAFNVN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + ++  +    S  L  K I  V+ +   +LIYI +RFK  +AL +I +   DI    
Sbjct: 121 IEVLDSYFIDSSFSSTLRSKSIFLVLGTFGLILIYITLRFKLSYALASILSTFHDIFFIA 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F   F IE N   + A+LT+IGYS+ND ++++DR+R N+K   T  +F ++++ SI++T
Sbjct: 181 AFLGAFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRL-TDNTFLNVLNISISQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R+V TS+  F++V  + V+    I  F++    G++V   SS+FIA+PILL +Y    
Sbjct: 240 LSRTVLTSVTTFVAVFSIYVFTEGPIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK 299


>gi|150006939|ref|YP_001301682.1| cation/multidrug efflux pump [Parabacteroides distasonis ATCC 8503]
 gi|256842062|ref|ZP_05547567.1| cation/multidrug efflux pump [Parabacteroides sp. D13]
 gi|298377364|ref|ZP_06987317.1| HAE1 efflux family protein [Bacteroides sp. 3_1_19]
 gi|149935363|gb|ABR42060.1| cation/multidrug efflux pump [Parabacteroides distasonis ATCC 8503]
 gi|256736378|gb|EEU49707.1| cation/multidrug efflux pump [Parabacteroides sp. D13]
 gi|298265778|gb|EFI07438.1| HAE1 efflux family protein [Bacteroides sp. 3_1_19]
          Length = 1052

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 63/554 (11%), Positives = 160/554 (28%), Gaps = 33/554 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GLL           + +FP  +P +                   
Sbjct: 7   RRPILSGVISVVIVFLGLLAI-----NSLPITQFPDIVPPSVT---------VTARYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D +   +    +   + +                +T + F      +  +  V   + 
Sbjct: 53  NADVMAKTVATPLERAINGVPGMTYMTSVCTNDGMSLTTIYFKVGTDPDVASVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  ++T  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVITEKEVNSMLMYLNIMSSDSTHTEKFVYNFADINILRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P+RL     +  +++      N        G+   +     Q
Sbjct: 173 GFVEIMGSRDYAMRVWLNPNRLAAYNMSPQEVTEAIRSQNIEAAPGKTGISSDKIPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++              +       +    +                 I          
Sbjct: 233 YVLQ-------------YSGKFSTPEEYGEIVLKALPDGSVLRLKDVATIEFDSEDYNMI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA-GSLPIKLNIVEERNVGADLGSD 359
            +         +   +   +    I+        L+     P     +          S 
Sbjct: 280 SMTDGKPSASIMIKQRPGSNAREVIQQIKAKMEELKETTFAPGMEYNISYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S+   T      LV IV+++ +   +  L+   ++ +++I T   + +LG ++ + ++  
Sbjct: 340 SVVLKTLLEAFILVFIVVYLFLQDFRSTLIPAIAVPVSLIGTFFFMQMLGFSINMLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IG+ VD+ I+V E +  + + +      +           I    +      + + 
Sbjct: 400 LVLAIGIVVDNAIVVVEAVHVKMHNEKLPPLKATKKAIGEIGGAIIAITLVMSAVFIPVG 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F  G      R F++T+ ++I+IS   A+++  A+   +++           L   F   
Sbjct: 460 FMDGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLKPVSHSKKAKKGLLTRFFEG 519

Query: 536 DCIAIQFMRARFWG 549
                 F+  R+  
Sbjct: 520 FNRRYDFLERRYRL 533



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 90/243 (37%), Gaps = 9/243 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +S     IS  +     + +++ +          ++   +++            N   
Sbjct: 270 EFDSEDYNMISMTDGKPSASIMIKQRPGSNAREVIQQIKAKMEELKETTFAPGMEYNISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I   +  ++ + I + I +++    +   L     + + +  T  F  + G
Sbjct: 330 DVSRFLDASISVVLKTLLEAFILVFIVVYLFLQDFRSTLIPAIAVPVSLIGTFFFMQMLG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+  + A++  IG  V++ +VV + +   +K++   +       K+I E  G  +  
Sbjct: 390 FSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHNEKLPPLKATKKAIGEIGGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD---WRAK 829
           ++      +P+    G+V      F++ +A  IV++  +++ ++  +   +        K
Sbjct: 448 TLVMSAVFIPVGFMDGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLKPVSHSKK 507

Query: 830 NAR 832
             +
Sbjct: 508 AKK 510



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 74/254 (29%), Gaps = 15/254 (5%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         +    +  +      +  L       G++       E +         + 
Sbjct: 793  NKEGNMVPYSNFMTMERVYGPSQITRYNLFTSAMITGEAAPGVSSGEALAAVEEIASEVL 852

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                          E    G   VI +     +Y+ +          L  I +L   +  
Sbjct: 853  PRGYDTEWSGVAKEEKESGGQTLVIFAICLAFVYLLLAAQYESLLLPLPVILSLPAGVFG 912

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSI 765
            +     + G+E N+ A  A++ LIG    + +++     +         IS      +  
Sbjct: 913  SFFLLYVVGLENNIYAQVALVMLIGLLGKNAILII----EVANQCRKEGISVMGAAIQGA 968

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS A    ++P+    G   +   S     A G+++     IF+   + + 
Sbjct: 969  TSRLRPILMTSFAFISGLIPLTIASGAGALGNRSIGTAAAGGMLIGTFVGIFLIPGLYVI 1028

Query: 823  IYD----WRAKNAR 832
                   ++ +  +
Sbjct: 1029 FESLATYFKKRKEK 1042


>gi|17548533|ref|NP_521873.1| multidrug efflux system transmembrane protein [Ralstonia
           solanacearum GMI1000]
 gi|17430781|emb|CAD17463.1| probable multidrug efflux system transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 1049

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 65/554 (11%), Positives = 153/554 (27%), Gaps = 41/554 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I  +G +       P+  + R+PS  P               + L   
Sbjct: 7   RRPVFAWVIALFIILLGAIAI-----PKLPIARYPSVAPPT-------------VNLSAT 48

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            S       I  +F            V 
Sbjct: 49  YPGATPQTMNDGVISLIERELSSVKNLLYFESSSDTSGSASIVATFKPGTDPAMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ +  +L    ++N L   +     +++     D         S  + R  ++++  
Sbjct: 109 NKLKAIEPRLPQVVRQNGLTVESASSGFLMIIGLQSDDGRFDETALSDYMARNVVEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     +   +S      N        G      +
Sbjct: 169 IEGVGRVQLFGA-EQAMRIWVDPAKLIAYGLSMNDLSAAISQQNAQIAPGSVGASPALPA 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +        +        +      
Sbjct: 228 QRVTVPLTVQGQLT-------------TPEQFAAIVLRANANGSKVVMGDVARVELGAQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T E      A L           +         
Sbjct: 275 YGFINRENGKAATAAAVQLAPGANAVRTAEGVQARMAELSRTMPAGMSYSIPFNTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++   G ++ + +
Sbjct: 335 ISIEKVIQTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALLGTFTIMLASGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +     ++  S   +           +    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMAQEGLSPRDATIKAMKEITGAVIGITLVLTAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +    G      + F ++M +SI+ S F A+++  A+   +++       +   +  +F
Sbjct: 455 PMALASGSVGVIYQQFTLSMAVSIVFSAFLALTLTPALCATLLKPVDPAHHEKRGVFGWF 514

Query: 533 LIPDCIAIQFMRAR 546
                   Q   AR
Sbjct: 515 NRRFDRITQGYAAR 528



 Score = 67.4 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 88/247 (35%), Gaps = 14/247 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q      +                 ++V     ++    +++  +
Sbjct: 258 SKVVMGDVARVELGAQSYGFINRENGKAATAAAVQLAPGANAVRTAEGVQARMAELSRTM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +         +  I K I  +I + + + + +++     R+    A+ A   L+
Sbjct: 318 PAGMSYSIPFNTAPFVKISIEKVIQTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALL 377

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              T  L      G   N+  +  ++  IG  V+D +VV + +     +    +S RD  
Sbjct: 378 GTFTIMLA----SGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAQEGLSPRDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            K++ E  G  +  ++      +PMA+  GSV      F + MA  IV +A  ++ +   
Sbjct: 432 IKAMKEITGAVIGITLVLTAVFIPMALASGSVGVIYQQFTLSMAVSIVFSAFLALTLTPA 491

Query: 819 ILLFIYD 825
           +   +  
Sbjct: 492 LCATLLK 498



 Score = 46.6 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 61/150 (40%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L +   +    L G+  ++     +
Sbjct: 865  QAPMLMALSMLVVFLVLAALYESWAIPLSVMLVVPLGLLGAVLAVLLRGMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L        +    +    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAK---QLREQGKGLVESAVTAARLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             +  G       +    +  G+V A   +I
Sbjct: 982  MIAMGASAETQHAIGTGVFGGMVSATVLAI 1011


>gi|325521824|gb|EGD00554.1| putative cation/multidrug efflux pump [Burkholderia sp. TJI49]
          Length = 463

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 58/489 (11%), Positives = 130/489 (26%), Gaps = 27/489 (5%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           MI  +G +IA+        +  +P  +P + I                     +   +  
Sbjct: 1   MIILLGGVIAMF----LLPISEYPEVVPPSVI---------VKAQYPGANPKVIAETVAS 47

Query: 73  YSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             +E  + ++             N  IT++F      +     V   +     +L  D +
Sbjct: 48  PLEEQINGVEDMLYMQSQANSDGNMTITVTFKLGTDPDKATQLVQNRVNQALPRLPEDVQ 107

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  + T        ++                   +    D++   +   Q         
Sbjct: 108 RLGITTVKSSPTLTMVVHLISPDNRYDMTYLRNYALINVKDRLSRIQGVGQVQLWGSGDY 167

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
            +    DP ++ Q       +       N      + G          Q  V  +  +  
Sbjct: 168 AMRVWLDPQKVAQRGLAAEDVVQAIREQNVQVAAGVIGASPSLPGTPLQLSVNARGRLQT 227

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
                          +    +                 I    +      +L        
Sbjct: 228 ED-------------EFGDIVVKTTPDGGVTHLRDIARIQLDASEYGLRSLLDNKPAVAM 274

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
             +     +     +      A L+          +          S      T      
Sbjct: 275 AINQSPGANSLQISDEVRKTMAELKQDMPAGVDYKIVYDPTQFVRSSIKAVVHTLLEAIA 334

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           LV+IV+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+VL IG+ VD  
Sbjct: 335 LVVIVVIVFLQTWRASIIPLIAVPVSIVGTFSLLLGFGYSINALSLFGMVLAIGIVVDDA 394

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           I+V E +        S   +           I    +T +   V L F  G   + +   
Sbjct: 395 IVVVENVERNIESGMSARQATYKAMQEVSGPIIAIALTLVAVFVPLAFMSGLTGQFYKQF 454

Query: 492 MGLSILISM 500
                + ++
Sbjct: 455 AMTIAISTV 463



 Score = 43.1 bits (99), Expect = 0.17,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 78/232 (33%), Gaps = 12/232 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++ +R                  +    V +           ++ + V+K
Sbjct: 234 IVVKTTPDGGVTHLRDIARIQLDASEYGLRSLLDNKPAVAMAINQSPGANSLQISDEVRK 293

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIW----IRFKWYFALG 695
            + E+         +        + +R  I  V+ + + A+ + +         W  ++ 
Sbjct: 294 TMAELKQDMP-AGVDYKIVYDPTQFVRSSIKAVVHTLLEAIALVVIVVIVFLQTWRASII 352

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+    + +
Sbjct: 353 PLIAVPVSIVGTFSLLLGFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI---ESGM 409

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA--IPMAFGI 805
           S R    K++ E  G  +       ++V     +   + G F     M   I
Sbjct: 410 SARQATYKAMQEVSGPII-AIALTLVAVFVPLAFMSGLTGQFYKQFAMTIAI 460


>gi|154491094|ref|ZP_02031035.1| hypothetical protein PARMER_01016 [Parabacteroides merdae ATCC
           43184]
 gi|154088514|gb|EDN87558.1| hypothetical protein PARMER_01016 [Parabacteroides merdae ATCC
           43184]
          Length = 1042

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 77/669 (11%), Positives = 181/669 (27%), Gaps = 47/669 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G++      L    +D++P   P               + +    
Sbjct: 9   RPVFSTVLSLVIVIVGII-----GLVMLPVDQYPQITPPV-------------VKISASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L        +   S       IT++F  +   +  A ++  
Sbjct: 51  PGASAMTVSQAVATPIEQELNGTPGMIYMQSSSSNSGGLTITVTFDVNANPDLSAVEIQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   S+L  D  +N +    +    ++      D      I  S       +D +   
Sbjct: 111 RVKLAESRLPADVVQNGITVEKQSASQLMTLSLLSDDPRFDEIYLSNFATINVLDVLRRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P RL  +  T   +       N+       G + + D D
Sbjct: 171 PGVGRVSNVGSRYYGMQIWVYPDRLANMGLTVKDLQNALKEQNSESAAGELGKQPVLDVD 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               +       +                +    +                 +    +  
Sbjct: 231 ITLPVTARGRLST--------------VKEFEDIVVRANPDGSIVRIRDVARVSLEASSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +              +                      
Sbjct: 277 STESGLNGKNAAILAIYMLPGANALEVATNVKEAMKEISQNFPEGLEYKFPFDATEYISQ 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T   + ++G +L + ++
Sbjct: 337 SIHEVYKTLFEALFLVVLVVFLSLQNWRAALIPTIAVPISLIGTFGFMLIMGFSLNMLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L IG+ VD  I+V E +     +   +   +           +  +++      V 
Sbjct: 397 LGLILAIGIVVDDAIVVVENVERLMHEEHLTAREATHKAMHELSGALIATSMVLAAVFVP 456

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK------SIDINP 527
           + F     G   R F+IT+ +S+L+S   A+++  AM   I+R  + K       I+I  
Sbjct: 457 VSFLSGITGALYRQFSITIVVSVLLSTVVALTLSPAMCAIILRPNRKKKNIVFRKINIWL 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +       R    G  ++     +            + +G   + ++   
Sbjct: 517 AKGNNKYGHLLEKAIRNPRRILAGFGMVIVFIFVLNRVIPTSFIPEEDQGFFTVELVMPE 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L   R   +       S       +N               T  + +   +  +   
Sbjct: 577 GATLERTRKITDRAIAFIESLPAVAYVQNVTGSSARVGTSQSRSTLTVILKPWEERKSSN 636

Query: 648 LSTIQNTEI 656
           +      E 
Sbjct: 637 MGVEDVMEQ 645



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+  ++     ++TLIG +  + +++ +  +   
Sbjct: 889  SWIVPIAVLLSLPVAALGAYLGIWVTGLHNDIYFQIGLVTLIGLAAKNAILIVEFAK--- 945

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                + +        +        + TS+A  + +LPM +    G +   S    + FG+
Sbjct: 946  IQVDSGVEVVKAALHAARMRFRPILMTSLAFVLGMLPMVLASGPGSASRHSIGTGVFFGM 1005

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +VA +  I +     + IY  + K
Sbjct: 1006 LVAITVGIVLVPFFFVLIYKIKGK 1029



 Score = 42.8 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 10/148 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL     + + +  T GF  + G   N+  +  ++  IG  V         + +N++
Sbjct: 363 WRAALIPTIAVPISLIGTFGFMLIMGFSLNMLTLLGLILAIGIVV----DDAIVVVENVE 418

Query: 750 LYTTSI--SFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFG 804
                   + R+   K+++E  G  + TSM      +P+  + G  G++   F+I +   
Sbjct: 419 RLMHEEHLTAREATHKAMHELSGALIATSMVLAAVFVPVSFLSGITGALYRQFSITIVVS 478

Query: 805 IVVAASSSIFIAAPI-LLFIYDWRAKNA 831
           ++++   ++ ++  +  + +   R K  
Sbjct: 479 VLLSTVVALTLSPAMCAIILRPNRKKKN 506


>gi|119899424|ref|YP_934637.1| RND efflux transporter permease [Azoarcus sp. BH72]
 gi|119671837|emb|CAL95751.1| RND efflux transporter, permease protein [Azoarcus sp. BH72]
          Length = 1027

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 72/536 (13%), Positives = 156/536 (29%), Gaps = 36/536 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  M+  +GL+        +  +  +P+                   +    
Sbjct: 9   KRPVFATVLSLMVLLVGLMS-----YSRLTVREYPNIDEPVVT---------VETLYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + ++   +     RQ +++IT+ F   R  ++ A  V   +  
Sbjct: 55  SAEIVESQVTKPLEDSLAGIEGVDVLSSISRQERSQITVRFRIERDADSAAADVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D ++ ++         I+      D     A+E S    R    ++       
Sbjct: 115 VRRRLPDDVEEPVIAKVEADASPIIWVAFASD--RHSALEMSDVASRIIKPRLQTLPGAA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  RL     T   +       N          R    +   + 
Sbjct: 173 DARVFGERRYAMRIWLDRDRLAAFGLTPQDVEDAIRRQNIELPAGRIESREREFAVVART 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +  +                  + VV       G           +    A      
Sbjct: 233 DLAEPAQ-----------------FEAVVVRQAGTPGGYPVRIRDIGRVEVAPADERTSV 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +          L   L           +   +      S + 
Sbjct: 276 RFMGKPAISLGLIKQSTANPLDLKRGLMELLPRLEEELPAGMTMSIANDSTVFIERSIAS 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V    +   +  LV   +I ++++   AL+ + G ++   ++  +V
Sbjct: 336 VFSTIWEAVVLVALVCLFFLRNWRAMLVPLVTIPVSLVGAFALMLVFGFSINTLTLLALV 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I        +   +   G       +    IT       + F  
Sbjct: 396 LAIGLVVDDAIVVLENIYRHIEDGMAPLAAAFRGAKEIGFAVVAMTITLAAVYAPVAFMT 455

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           G        FA+T+  ++++S F A+++   M   ++R++       N +  F   
Sbjct: 456 GRTGKLFTEFALTLAGAVIVSGFVALTLSPMMCSRLLRHEPRHGRVYNAIEGFLEW 511



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 61/155 (39%), Gaps = 7/155 (4%)

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + +  +F+ +   L  + T+ L +   L    L G   N+ +   ++TL+G      +
Sbjct: 862  IYLVLAAQFESFRDPLIIMLTVPLSMAGALAALRLTGGTLNVYSQIGLVTLVGLITKHGI 921

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ +      +L     + R+ + ++    L   + T+ A  +  +P+A+    G     
Sbjct: 922  LIVEFAN---QLREQGRALREALVEAAVLRLRPILMTTGAMVLGAIPLALATGAGAESRQ 978

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                 +  G+ +    ++F+   +   +     ++
Sbjct: 979  QIGWVIVGGLSLGTFFTLFVVPTVYTLLARREREH 1013



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 61/162 (37%), Gaps = 7/162 (4%)

Query: 676 SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           + + + +      + W   L  + T+ + +        +FG   N   + A++  IG  V
Sbjct: 343 AVVLVALVCLFFLRNWRAMLVPLVTIPVSLVGAFALMLVFGFSINTLTLLALVLAIGLVV 402

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +D +VV + +    +     ++      +   E     V  ++       P+A   G   
Sbjct: 403 DDAIVVLENI---YRHIEDGMAPLAAAFRGAKEIGFAVVAMTITLAAVYAPVAFMTGRTG 459

Query: 795 G---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                FA+ +A  ++V+   ++ ++  +   +     ++ R+
Sbjct: 460 KLFTEFALTLAGAVIVSGFVALTLSPMMCSRLLRHEPRHGRV 501


>gi|15889340|ref|NP_355021.1| AcrB/AcrD/AcrF family protein [Agrobacterium tumefaciens str. C58]
 gi|15157182|gb|AAK87806.1| AcrB/AcrD/AcrF family protein [Agrobacterium tumefaciens str. C58]
          Length = 1048

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 65/626 (10%), Positives = 174/626 (27%), Gaps = 46/626 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L +++   GL   +   + +      PS                     E  
Sbjct: 20  RRPILAAVLNTLLVVAGLAALVGVEVRELPDVDRPSIS--------------VRTTYEGA 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        S +   +++T+ F+D+      A+ V   +  
Sbjct: 66  APETIDQEVTQTIEGAVARVSGIKSIASSSQFGTSRVTMEFSDNVDMAVAANDVRDAIGR 125

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  D  +  ++        I+        +     + +  +  + ID++   +   
Sbjct: 126 VTNQLPDDADEPQIIKADSDSQPIMRLAVTSSTLSME--DLTKLVDDEIIDRLAAVDGVA 183

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + + + L     T   +S                            
Sbjct: 184 DVELYGDQEKVFRVDLNQAALASRGLTVTDVSNALASAALDVPAGSLKSTTQDIVVRATA 243

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    + S + +                                   +           
Sbjct: 244 SLTKPEDFSNLLIKDN------------------------IRLRDVATVMLGADDQSTSL 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +              + A        +V   +     G+   
Sbjct: 280 RSNGVQGVGLGVIRQAQSNTLNISTGVKAAVDAMSANLPEGTRIVVTSDDAVFIEGALHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    + A +V++VL++     +  L+   ++ + +I T+  + ++G ++ + ++  IV
Sbjct: 340 VELALGLSALIVVVVLYLFFRDWRATLIPAITMPVALIGTIVAIYMVGFSVNILTLLAIV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  +  T     + L F  
Sbjct: 400 LATGLVVDDAIVVLENIVRRRAEGMGPRAAAVLGTQEVFFAVIATTATLAAVFIPLSFLP 459

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F   +  ++ +S  TA+++   +   +++    +                 
Sbjct: 460 GQLGGLFREFGFVLAFAVGLSSITALTLCPMLASRMLKQGLKEPTGPLMWFGNVFASTYK 519

Query: 539 AIQFMRARFWGVGISILFSICSICLL---FTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                      + I +      +  +            + +  + + V A + V L   R
Sbjct: 520 TTLAACLNNPLIVIVVALIFSGLSWIAFGMIQNELTPREDRASVMMRVTAPQGVSLEYTR 579

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRL 621
             L+ ++      ++    +N     
Sbjct: 580 DQLQRIEENLQPLRDSGEIRNVYSIT 605



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 93/249 (37%), Gaps = 7/249 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               + L  V + +        S ++   +   L  ++    +++  +  ++     ++ 
Sbjct: 256 IKDNIRLRDVATVMLGADDQSTSLRSNGVQGVGLGVIRQAQSNTLNISTGVKAAVDAMSA 315

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
            +P  T               + +  + + +SA+ +++ +++ F+ W   L    T+ + 
Sbjct: 316 NLPEGTRIVVTSDDAVFIEGALHEVELALGLSALIVVVVLYLFFRDWRATLIPAITMPVA 375

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T+    + G   N+  + A++   G  V+D +VV + +   ++     +  R     
Sbjct: 376 LIGTIVAIYMVGFSVNILTLLAIVLATGLVVDDAIVVLENI---VRRRAEGMGPRAAAVL 432

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              E     + T+       +P++      G +   F   +AF + +++ +++ +   + 
Sbjct: 433 GTQEVFFAVIATTATLAAVFIPLSFLPGQLGGLFREFGFVLAFAVGLSSITALTLCPMLA 492

Query: 821 LFIYDWRAK 829
             +     K
Sbjct: 493 SRMLKQGLK 501



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 89/285 (31%), Gaps = 9/285 (3%)

Query: 552  ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
             SI+        +    L+          L  +  +  D  +V  ++ +    +      
Sbjct: 739  RSIVDVFVDGDAIPVRLLSSTRPINDPTDLENVFLKTGDGKIVPMSVIATLKENAVAPQL 798

Query: 612  DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            + E+                         ++ + V  S  +   +       E     ++
Sbjct: 799  NREQQLPSVGFTANLKDGVSLGQAMEKVNELAQSVMPSGARLLPLGEAATLEENSSGMLL 858

Query: 672  GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTL 729
                +   + + +  +F+   +   I    + +       AL   G   N+ +   ++ L
Sbjct: 859  TFGFAIAIIFLVLAAQFESVLS-SVIIMSTVPLGLACAVIALLVTGSSLNVYSQIGLVLL 917

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +       L     + R+ I+K+ +  L   + T +A  +  +P+ + 
Sbjct: 918  VGVMAKNGILIVEFAN---HLRDQGATVREAIEKATSIRLRPVMMTMIATILGGVPLVLA 974

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    +  G+  A   +++I     L I  +    A
Sbjct: 975  QGAGAEARIALGWVIVGGLGFATLVTLYITPVSYLLIARFAKPQA 1019


>gi|283457998|ref|YP_003362605.1| preprotein translocase subunit SecF [Rothia mucilaginosa DY-18]
 gi|283134020|dbj|BAI64785.1| preprotein translocase subunit SecF [Rothia mucilaginosa DY-18]
          Length = 395

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 125/289 (43%), Gaps = 12/289 (4%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R W +  ++L ++  +      G N GIDF+GG +  V     VD +     +     
Sbjct: 29  KRRLWLLLAAVLMAVSVLIPAVGGGFNLGIDFRGGSEFVVSKTAHVDTATGERIIHEKAK 88

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                +      N            ++    L++                +  VGP    
Sbjct: 89  DASDVRV----TNIAPGTIRAQMSKLSDDETLQVKAALQEGYGVSENDVTSSFVGPTWGA 144

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           ++ R+   G++   +  LI +   F+ W  +L +I  L   +  T+G +A FG E   +A
Sbjct: 145 DVTRQAFWGLVAFVVLALIGMAFYFRTWKMSLASIAGLFFTVVVTVGLYAAFGFEITPSA 204

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           +   LT++ YS+ D VVV+D++R+N    L     +F + I+ ++N+TL RS+ T++   
Sbjct: 205 IIGFLTILSYSLYDSVVVFDKIRENTDGVLERRDTTFAEQINLAVNQTLVRSINTAIVGV 264

Query: 781 ISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + V  +      + G   +   ++ +  GI+V    ++F++AP+   + 
Sbjct: 265 LPVGAILFIGAFILGAGTLQDLSLSLFVGILVGMFGTLFVSAPLYASLR 313


>gi|255016039|ref|ZP_05288165.1| cation/multidrug efflux pump [Bacteroides sp. 2_1_7]
          Length = 1052

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 63/554 (11%), Positives = 160/554 (28%), Gaps = 33/554 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GLL           + +FP  +P +                   
Sbjct: 7   RRPILSGVISVVIVFLGLLAI-----NSLPITQFPDIVPPSVT---------VTARYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D +   +    +   + +                +T + F      +  +  V   + 
Sbjct: 53  NADVMAKTVATPLERAINGVPGMTYMTSVCTNDGMSLTTIYFKVGTDPDVASVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  ++T  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVITEKEVNSMLMYLNIMSSDSTHTEKFVYNFADINILRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P+RL     +  +++      N        G+   +     Q
Sbjct: 173 GFVEIMGSRDYAMRVWLNPNRLAAYNMSPQEVTEAIRSQNIEAAPGKTGISSDKIPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++              +       +    +                 I          
Sbjct: 233 YVLQ-------------YSGKFSTPEEYGEIVLKALPDGSVLRLKDVATIEFDSEDYNMI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA-GSLPIKLNIVEERNVGADLGSD 359
            +         +   +   +    I+        L+     P     +          S 
Sbjct: 280 SMTDGKPSASIMIKQRPGSNAREVIQQIKAKMEELKETTFAPGMEYNISYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S+   T      LV IV+++ +   +  L+   ++ +++I T   + +LG ++ + ++  
Sbjct: 340 SVVLKTLLEAFILVFIVVYLFLQDFRSTLIPAIAVPVSLIGTFFFMQMLGFSINMLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IG+ VD+ I+V E +  + + +      +           I    +      + + 
Sbjct: 400 LVLAIGIVVDNAIVVVEAVHVKMHNEKLPPLKATKKAIGEIGGAIIAITLVMSAVFIPVG 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F  G      R F++T+ ++I+IS   A+++  A+   +++           L   F   
Sbjct: 460 FMDGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLKPVSHSKKAKKGLLTRFFEG 519

Query: 536 DCIAIQFMRARFWG 549
                 F+  R+  
Sbjct: 520 FNRRYDFLERRYRL 533



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 90/243 (37%), Gaps = 9/243 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +S     IS  +     + +++ +          ++   +++            N   
Sbjct: 270 EFDSEDYNMISMTDGKPSASIMIKQRPGSNAREVIQQIKAKMEELKETTFAPGMEYNISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I   +  ++ + I + I +++    +   L     + + +  T  F  + G
Sbjct: 330 DVSRFLDASISVVLKTLLEAFILVFIVVYLFLQDFRSTLIPAIAVPVSLIGTFFFMQMLG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+  + A++  IG  V++ +VV + +   +K++   +       K+I E  G  +  
Sbjct: 390 FSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHNEKLPPLKATKKAIGEIGGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD---WRAK 829
           ++      +P+    G+V      F++ +A  IV++  +++ ++  +   +        K
Sbjct: 448 TLVMSAVFIPVGFMDGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLKPVSHSKK 507

Query: 830 NAR 832
             +
Sbjct: 508 AKK 510



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 74/254 (29%), Gaps = 15/254 (5%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         +    +  +      +  L       G++       E +         + 
Sbjct: 793  NKEGNMVPYSNFMTMERVYGPSQITRYNLFTSAMITGEAAPGVSSGEALAAVEEIASEVL 852

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                          E    G   VI +     +Y+ +          L  I +L   +  
Sbjct: 853  PRGYDTEWSGVAKEENESGGQTLVIFAICLAFVYLLLAAQYESLLLPLPVILSLPAGVFG 912

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSI 765
            +     + G+E N+ A  A++ LIG    + +++     +         IS      +  
Sbjct: 913  SFFLLYVVGLENNIYAQVALVMLIGLLGKNAILII----EVANQCRKEGISVMGAAIQGA 968

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS A    ++P+    G   +   S     A G+++     IF+   + + 
Sbjct: 969  TSRLRPILMTSFAFISGLIPLTIASGAGALGNRSIGTAAAGGMLIGTFVGIFLIPGLYVI 1028

Query: 823  IYD----WRAKNAR 832
                   ++ +  +
Sbjct: 1029 FESLATYFKKRKEK 1042


>gi|322831533|ref|YP_004211560.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
 gi|321166734|gb|ADW72433.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Rahnella
           sp. Y9602]
          Length = 1049

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 80/622 (12%), Positives = 174/622 (27%), Gaps = 39/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               +      
Sbjct: 8   RPIFAWVVAIVIMLAGALSIM-----KLPISQYPNIAPPAI---------SVSVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            +     +    ++  + L              +  I  +F      +    +V   +  
Sbjct: 54  AETAQNTVVQVIEQQLNGLDNLRYIESQSNSDGSATIIATFDQGTNPDIAQVQVQNKVSL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +     +     +   ++L             + S  ++ +  D I  ++   
Sbjct: 114 AESQLPTEVVNQGIRIAKYQANFMLLVSLISTDGKMSNSDLSNLLVTKLEDPIVRTKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP++L +     + +S      N        G            
Sbjct: 174 DFLLLGS-EYAMRIWLDPAKLYKYQLVPSDVSAAIEAQNVQVSSGSLGGLPTVKDSKLSA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K                   H+    +        +       N+           
Sbjct: 233 TIIGKTR-------------FDSIHQFKNVLLKVNADGSQVRLSDVGNVDLGPESYSISS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +   T        A L              +       S   
Sbjct: 280 TFNGRPSTAIALRLASGANVLDTDRAVRETIAGLEDSLPAGVKVEFPYQTAPVVSASIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+ + +   +  LV    + + ++ T  +L+  G ++   ++ G+V
Sbjct: 340 VVKTLIEAIVLVFCVMLLFLQNLRATLVTTLVVPVVLLGTFGILAAAGYSINTLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  S   +      +    +F   +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTEEKLSPKDATIKSMKQIQGALFGIALVLSAVLVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++ +S+  A+    A+   II++   +         F    D 
Sbjct: 460 GGSTGIIYRQFSITIVSAMALSVLMALIFTPALCATIIKHNDEEKSQKGFAGWFNRNFDK 519

Query: 538 IAIQFMRA------RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            A+++ RA      R        L  + +   +FT      +  +    + V A  P + 
Sbjct: 520 GAMRYTRAVGTVISRRRLFMGIYLLIVIATGFMFTRVPTTFLPDEDQAVMFVQATLPANA 579

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
           S  R+      + +       G
Sbjct: 580 SAERTQQVLDNVREYLMTQESG 601



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 12/241 (4%)

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                 G   ++ F+G  +  +     PG S        M                     
Sbjct: 803  GKWVYGSPRYERFNGVSSVELMGSPAPGYSSGDANEAVMEIAAKLPPGYKVAWHGLSYEE 862

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
                 +      + +I+  + +     +   W      +  + L I  T+G   L G+  
Sbjct: 863  KLSGSQTPALYSLSMIVVFLCLA---ALYESWSIPFSVMLVVPLGILGTIGAVLLRGLSN 919

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++     +LT +G +  + +++ +  ++        +S      ++    +   + TSMA
Sbjct: 920  DVFFQVGLLTTVGLAAKNAILIVEFAKE--LHENEGMSVAQAAIEAAKLRIRPIIMTSMA 977

Query: 779  AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA----PILLFIYDWRAKNA 831
              + V P+ +    G     S    +  G++ A   +IF        ++        K+ 
Sbjct: 978  FVLGVFPLTISSGAGAGSQHSIGTAVVGGMLTATFLAIFFVPMFYVTVVNLFTRKSKKHD 1037

Query: 832  R 832
            +
Sbjct: 1038 K 1038



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/197 (16%), Positives = 75/197 (38%), Gaps = 8/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A    +  ++  +   V +     T  V      E+++  I  +++    ML+++ 
Sbjct: 301 DTDRAVRETIAGLEDSLPAGVKVEFPYQTAPVVSASIEEVVKTLIEAIVLVFCVMLLFLQ 360

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T G  A  G   N   +  ++  IG  V+D +VV + + 
Sbjct: 361 ---NLRATLVTTLVVPVVLLGTFGILAAAGYSINTLTMFGMVLAIGLLVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +S +D   KS+ +  G     ++     ++PMA +GGS       F+I + 
Sbjct: 417 -ERVMTEEKLSPKDATIKSMKQIQGALFGIALVLSAVLVPMAFFGGSTGIIYRQFSITIV 475

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   ++     +
Sbjct: 476 SAMALSVLMALIFTPAL 492


>gi|330963559|gb|EGH63819.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 932

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 68/519 (13%), Positives = 147/519 (28%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P   P                      
Sbjct: 8   RPVFAWVIAICIMLAGALSI-----SQLPLEQYPDIAPPTV---------KISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L     +   S       I+L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDNLTYMSASSSSAGSASISLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQI   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGGSDFLMLVALASDNESVTGTQIGDYISSTLLDQISRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPAKLEKYALMPSDVSSALEAQNTEVSAGQLGALPAVAGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFDNVVVKSTSDGAVVLLSDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPSQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 QEVVKSLGEAIVLVVLIMFLFLQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     + Q     +     +   S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIMVVENVERVMGEEQLGALEATRKSMAEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATL 498



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 86/240 (35%), Gaps = 7/240 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R  L S      S  N        ++L            +   +K+          
Sbjct: 263 SDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPSQMQ 322

Query: 651 IQNTEIVGPKISREL-IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
           ++            L I++ +  +  + + +++ +++  +     L    T+ + +  T 
Sbjct: 323 LKTVIAYDTTPFVSLSIQEVVKSLGEAIVLVVLIMFLFLQNLRATLIPAITVPVVLLGTF 382

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G  ALFG   N   + A++  IG  V+D ++V + +     +    +   +   KS+ E 
Sbjct: 383 GVLALFGYSINTLTMFAMVLAIGLLVDDAIMVVENV--ERVMGEEQLGALEATRKSMAEI 440

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               +  ++      +PMA + GS       F++ +   ++++   ++ +   +   +  
Sbjct: 441 TSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATLLR 500


>gi|153948647|ref|YP_001399660.1| RND efflux transporter [Yersinia pseudotuberculosis IP 31758]
 gi|152960142|gb|ABS47603.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pseudotuberculosis IP 31758]
          Length = 1039

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 69/684 (10%), Positives = 187/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITLVGWVS-----LYVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +       L + +           +     + +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAVASPLEAQVNGVSHMLYMESTSANNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       Q    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPQQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP R+  L  +   +       N        G      +
Sbjct: 169 ISGVGDVQVFGARDYSMRVWLDPQRMESLNVSVQDIVAALQQQNVQAAAGQIGSSPSMPN 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  ++                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLTDAR-------------QFADVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A         +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLSAAFPADLTYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL V+++ +   +   +   ++ ++++ T A+L + G +    S
Sbjct: 336 ATLHEIAVSLTLTLIVVLAVVYLFLQSLRATFIVALTVPVSLLGTFAVLYVFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +     N  + S   +     S+    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLSNDPHLSPAEATRQAMSQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V +    G      R FA+T+  ++++S   A+++  A+   +++ + + +  +      
Sbjct: 456 VPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPALCAVLLKRRTLATTGMFGTINK 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L         +  R     +  + ++  + L    G +         +        + L
Sbjct: 516 GLDRARDGYVGLTGRINRRAVFSIAALLLVGLATWWGYSRLPTSFLPEEDQGYFFVSLQL 575

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK--KITEIVPLS 649
               S   +  + D  +Q           ++      ++             +       
Sbjct: 576 PDGASLNRTQTVMDQMYQQVSTNDAVEDVIKITGFSLLSGNNAPNAGFAIVMLKPWGQRP 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            I             +    I+ V
Sbjct: 636 HIDRVLASIQANLAAIPSAMIMAV 659



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P                  + +  V + ++ I +L  +++             T+ +
Sbjct: 316 AAFPADLTYEINYDSTLPVTATLHEIAVSLTLTLIVVLAVVYLFLQSLRATFIVALTVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +      +S  +   
Sbjct: 376 SLLGTFAVLYVFGYSANTLSLFAIILALTIVVDDAIVVVENV-ERLLSNDPHLSPAEATR 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++++  G  + T++      +P+A+     G +   FA+ ++  +++++ +++ ++  +
Sbjct: 435 QAMSQIAGPIIATTLVLMAVFVPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPAL 494

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 495 CAVLLKRR 502



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 80/246 (32%), Gaps = 15/246 (6%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +L +L     S                  G +       + +      +        +  
Sbjct: 792  SLANLVTLTPSVGAPFISNFNQFPSVAISGSAADGASSGQAMAAMEALLAQNLPQGYSYS 851

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFAL 713
                  +E    G V  I  A  +  Y+++      W   L  + +++  +   +   + 
Sbjct: 852  WSGMSWQEQQTGGQVAFIYLAALVFAYLFLVAQYESWSIPLVVVLSVVFAVGGAVAGLSA 911

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             G   ++ A   ++ LIG +  + +++  + + R+         S  +       +    
Sbjct: 912  MGFANDVYAQIGLVLLIGLAAKNAILIVEFSKARRE-----EGASIAEAAQDGAKQRFRA 966

Query: 772  SVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + T+++  + V+P+    G   +      I +  G+++A +  I     + L I   R 
Sbjct: 967  VMMTAISFILGVMPLVFASGAGAMSRQIIGITVFGGMLMATAVGILFIPALYLHIQRLRE 1026

Query: 829  --KNAR 832
              KN +
Sbjct: 1027 WTKNRK 1032


>gi|330996905|ref|ZP_08320771.1| RND transporter, HAE1 family [Paraprevotella xylaniphila YIT 11841]
 gi|329572113|gb|EGG53780.1| RND transporter, HAE1 family [Paraprevotella xylaniphila YIT 11841]
          Length = 1013

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/635 (11%), Positives = 177/635 (27%), Gaps = 42/635 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I   G++           +  +PS                        
Sbjct: 9   RRPVLATVMTVIILLFGMI-----GYFYIGVREYPSVDNPII---------SVSCSYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLTSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     +      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADASPILMVALQSE--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +                        D    
Sbjct: 173 SVSIWGEKKYSMRLWLDPIKMAGYGITPMDVKNAV--------------------DNENV 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                     T K   D+     G +              A +    
Sbjct: 213 ELPSGSIEGNTIELNIRTMGLMNTAKMFDDLIVKHEGNQIIRFSDIGRAELGAADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVVPQPGANHINIADAVYERMEQMKKDLPDDVHYSYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I ++++ +  ++ L G ++ + ++  +V
Sbjct: 333 VKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLVGSFFIMYLFGFSINVLTMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  +   +   G    +  +  + +T +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYIRIEQGMNPKKAGIEGAKEIFFAVISTTVTLVAVFFPIVFME 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF---FLIP 535
              G   R F++ +  +++IS F A++    +   +++ +K K+        F       
Sbjct: 453 GTTGRLFREFSMVISGAVVISSFAALTFTPMLATKLLKQQKKKNAFYRITEPFFVGMNNM 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              ++Q +          I+  + +I  L+    +     +    + +       ++   
Sbjct: 513 YSRSLQVVLRHRIWTLPVIVLMLGAIVYLWGAIPSEMAPLEDRSMITINTRGAEGVTYEY 572

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
               +  I  I             R+    G+   
Sbjct: 573 IRDYTEDINSIVDSVIPDADAVTARVSSGSGNVQI 607



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +   I++ + + + +  +F+ +      + T+ L I   L F     I  N+ +   ++ 
Sbjct: 846  MFAFILALVLIYLILAAQFESFKDPFIIMLTVPLAIAGALIFMYFNDITMNVFSQIGIIM 905

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +    N+K           +  +  + L   + TS +  + ++P+A 
Sbjct: 906  LIGLVAKNGILIVE--FANLKQ-ENGEDKVTAVHDAALQRLRPILMTSASTVLGLIPLAF 962

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G          I +  G+VV+   +++I   +  +I   R    
Sbjct: 963  ATGEGCNQRIAMGIAVVGGMVVSTFLTMYIVPAVYSYISTNRINKK 1008



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 54/525 (10%), Positives = 143/525 (27%), Gaps = 40/525 (7%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R+  W + +  +     ++        +       S +  N        RG   +  E 
Sbjct: 521  LRHRIWTLPVIVL-MLGAIVYLWGAIPSEMAPLEDRSMITINT-------RGAEGVTYE- 571

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                ++  + +  +  + S +         +      + +   D   ++    +    L 
Sbjct: 572  ----YIRDYTEDINSIVDSVIPDADAVTARVSSGSGNVQIRLKDMGDRDYTQMEAAEKLS 627

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                               + +    + Q +       ++     +    I+++      
Sbjct: 628  QA--------------VKKKTKARAFVQQQSSFGGRRSSMPIQYVLQATNIEKLEKVLPV 673

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                     + Q+           L  +  ++  H      +  G            G  
Sbjct: 674  FMEKVYENPVFQMADVD-------LKFSKPEIRIHINRDKANIMGVNTRDLSETLQYGLS 726

Query: 241  YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    ++G            + +KP    +     +        + I    ++    
Sbjct: 727  GQRMGYFYMNGKQYEILGEINRQQRNKPADLRAIYLRSSDGKMIQMDNLIELESSIAPPK 786

Query: 301  RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   ++    +  A ++   TI         +    L          +      S S
Sbjct: 787  LYRYNRFVSA---TISAGLADGKTIGQGLDEMDKIAKEVLDDTFRTSLSGDSKEFRESSS 843

Query: 361  IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                   +   L+ ++L       K   +   ++ L +   L  +     T+ + S  GI
Sbjct: 844  SLMFAFILALVLIYLILAAQFESFKDPFIIMLTVPLAIAGALIFMYFNDITMNVFSQIGI 903

Query: 421  VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            ++ IGL   + IL+ E    +    +    ++     +    I  ++ + ++  + L F 
Sbjct: 904  IMLIGLVAKNGILIVEFANLKQENGEDKVTAVHDAALQRLRPILMTSASTVLGLIPLAFA 963

Query: 481  GGGAVRG---FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             G          I +   +++S F  + IV A+  +I   +  K 
Sbjct: 964  TGEGCNQRIAMGIAVVGGMVVSTFLTMYIVPAVYSYISTNRINKK 1008



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 73/194 (37%), Gaps = 9/194 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +E +KK + + V  S   +          E+ +      ++  I + +++    
Sbjct: 297 DAVYERMEQMKKDLPDDVHYSYGFDNTKFIRASINEVKQTVYEAFVLVIIIIFLFL---R 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +  +     LFG   N+  + AV+  +G  V+D +V+ + +    
Sbjct: 354 DWRVTLVPCIVIPVSLVGSFFIMYLFGFSINVLTMLAVVLAVGLVVDDAIVMTENI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 ++ +    +   E     + T++       P+    G+       F++ ++  +
Sbjct: 411 IRIEQGMNPKKAGIEGAKEIFFAVISTTVTLVAVFFPIVFMEGTTGRLFREFSMVISGAV 470

Query: 806 VVAASSSIFIAAPI 819
           V+++ +++     +
Sbjct: 471 VISSFAALTFTPML 484


>gi|302188557|ref|ZP_07265230.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           syringae 642]
          Length = 1048

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 67/519 (12%), Positives = 150/519 (28%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTVK---------ISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I+L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASISLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +S      N        G     +      
Sbjct: 174 DVQTLGSG-YAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVEGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL--PIKLNIVEERNVGADLGSD 359
            L             +  +     E        L            ++          S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPAQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++ + +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIVLVVLIMSLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     +   S   +         S  I  + + + +   + 
Sbjct: 400 MVLAIGLLVDDAIVVVENVERVMGEEHLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 459

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 460 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 498



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 93/254 (36%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ + +  +
Sbjct: 303 GEAIKAKLKELEPFYPAQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMSLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 421 VMGEEHLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 480

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 481 LLSVLVAMTLTPAL 494



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 85/265 (32%), Gaps = 11/265 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +    +  V  S   S+  S     +   N       +           
Sbjct: 778  RMQSADLDHWFVRNSNDEMVPFSSFASSRWSYGSPLLERYNGSSSLEVVGDPAPGVSSGT 837

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  ++K+    I    T Q+ ++        ++    + V+   + +     +   
Sbjct: 838  AMDAVEAIIKQLPEGIGYEWTGQSYQLRLSGSQAPMLYA--ISVLFVFLCLA---ALYES 892

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W      +  + L +   +    + G+  ++     +LT +G +  + +++ +  +    
Sbjct: 893  WSVPFSVMLVVPLGVVGAVLATRISGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK---H 949

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIV 806
            L     S  +    +  + L   + TS+A    VLP+A+  G+           +  G+ 
Sbjct: 950  LQEQGKSLHEATLLAARQRLRPILMTSLAFMFGVLPLALSSGAGSAGRNAIGTGVLGGMF 1009

Query: 807  VAASSSIFIAAPILLFIYDWRAKNA 831
             A    IF+     + +    ++++
Sbjct: 1010 SATVLGIFLVPLFFVEVRRRFSRSS 1034


>gi|195541904|gb|ACF98105.1| putative transporter hydrophobe [uncultured bacterium 1042]
          Length = 1057

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 58/505 (11%), Positives = 135/505 (26%), Gaps = 32/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+      LP   +  +P  +P +              +     
Sbjct: 10  RPIFAAVLSIVIFAAGLIA-----LPLLPISEYPDVVPPSVQ---------VRAIYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              ++  +    +E  + +  E +         + +   T++F      +     V   +
Sbjct: 56  PKEISETVATPLEEAINGV--ENMMYMKSVAGSDGVLLMTVTFRPGTDADTAQVSVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               S+L     +  + T  +     ++          +++        +  D++     
Sbjct: 114 SQALSRLPEAVVRQGVTTQKQSPNFTMVINLFSPGDTYNSLYLRNYATLKIKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q L        +    DP R+     T   +       N        G   L      
Sbjct: 174 VGQALIFGSGDYAMRIWLDPDRVASRGLTAGDVVRAVREQNLQVSAGQLGAEPLPADSDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    +     G           I    +    
Sbjct: 234 LVSINARGRL-------------QTEQEFGDVVIKTGSGGEVVRLADVARIELGASDYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +        L                      S 
Sbjct: 281 RAQLDNKESVAIGVFQAPGANALEIADAVRARMDELATRFPSDMGWTSVYNTTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++++ T  +L LLG ++   S+ G
Sbjct: 341 DAVISTLLEAIVLVVLVVILFLQTWRASIIPLIAVPVSIVGTFGVLYLLGFSINTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLSPLAAAHQAMREVSGPIVAIALVLCAVFVPMAF 460

Query: 480 FGGGAVRGFAITMGLSILISMFTAI 504
             G   + +        + ++ +AI
Sbjct: 461 LEGVIGQFYKQFAVTIAISTVISAI 485



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 78/245 (31%), Gaps = 9/245 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               + V +  +    ++     +   N     + +     +   S      +  +   + 
Sbjct: 798  DQGQMVPIGSMVRVDQTYGPDPVMRYNGYPAIDVIGDADPRLLSSAQAMAKVSELAAMVL 857

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                ++   +            +    V  + + +A L+   +   W   L  +  + + 
Sbjct: 858  PNGMVTEWTDLSFQQSTQGNAAL---FVFPLSAMLAFLVLAALYESWTLPLAVVLIVPMS 914

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +   L    L G + N+     ++ L+G +  + +++ +  R+   L        +   +
Sbjct: 915  MLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE---LEIQGKGIVEAALE 971

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   V TS+A     +P+ +    G  V     I +  G++      +F+     
Sbjct: 972  ACRLRLRPIVMTSIAFIAGTVPLLLGHGAGAEVRAVTGITVFAGMLGVTLFGLFLTPVFY 1031

Query: 821  LFIYD 825
            + +  
Sbjct: 1032 VTLRK 1036



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T G   L G   N  ++  ++  IG  V+D +VV + + +N++   
Sbjct: 371 PL---IAVPVSIVGTFGVLYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIEE-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             +S      +++ E  G  V  ++      +PMA      G     FA+ +A   V++A
Sbjct: 426 -GLSPLAAAHQAMREVSGPIVAIALVLCAVFVPMAFLEGVIGQFYKQFAVTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 INS 487


>gi|158424291|ref|YP_001525583.1| hydrophobe/amphiphile efflux-1 [Azorhizobium caulinodans ORS 571]
 gi|158331180|dbj|BAF88665.1| hydrophobe/amphiphile efflux-1 [Azorhizobium caulinodans ORS 571]
          Length = 1066

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 58/548 (10%), Positives = 152/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+  L        +  +P  +P   +                  
Sbjct: 10  RPIFAGVLSVLIFLGGLISML-----AMPISEYPEVVPPQVV---------VRATYAGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVSTPLEEAINGVEGMLYMSSQATTDGLMTLTVTFKLGTDPDKAQQLVQNRISQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   +   
Sbjct: 116 AEPRLPEEVRRLGVTTVKSSPDLTMVVHLISPNNRYDTTYLRNYAVLNVKDRLARIDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   + A +       N      + G     +    Q 
Sbjct: 176 QVQLFGAGDYSMRIWLDPQKVAEHGLSAADIVREIQAQNVQAAAGVVGASPGANGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  ++                +    +                 I    +      
Sbjct: 236 SVNAQGRLASAE-------------EFGRIVVKSGANGEIVLLKDVARIELGASEYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +    + + ++          +          S   
Sbjct: 283 LLNNTQAVAVPVFQAPGSNAIRIADDVRRVMSEIKENMPEGVDYSIVYDTTQFVRASIDA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T A++ L G ++   ++ G+V
Sbjct: 343 VVHTLLEAVLLVVIVVIVFLQTWRASIIPLLAVPVSIVGTFAVMHLFGFSVNALTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +      +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEEGLEPGAATYKAMQEVSGPIIAIALVLVAVFVPLAFIT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++        +  +    L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAINSLTLSPALSALLLKGHDAPKDRLTRIMDAGLGWFFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 RFNVAFVR 530



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/256 (10%), Positives = 78/256 (30%), Gaps = 12/256 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
             +  G +++       + LS +     +         N     +             AQ 
Sbjct: 790  PEDIGTLKVRSQWGEMIPLSALLKVQSAAGPERAMRYNGFLSADVNGGAAPGFSSGEAQA 849

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             V  + ++ + +                         +    ++   + + +  +++   
Sbjct: 850  AVERIARETLPKGFSF-----EWTELTYQDILAGNSAVWVFPLAIFLVFLVLAAQYESLM 904

Query: 693  -ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I  + + +   L    L G + N+     ++ L+G S  + +++ +  R+     
Sbjct: 905  LPLAIILIVPMGLLAALTGVWLSGGDNNVFTQIGLVVLVGLSAKNAILIVEFARELEFAG 964

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                       ++    L   + TS+A  + V+P+      G  +  +  I +  G++  
Sbjct: 965  RK---PVAAAIEASRLRLRPILMTSLAFIMGVVPLVTSIGAGAEMRQAMGIAVFSGMIGV 1021

Query: 809  ASSSIFIAAPILLFIY 824
                I +     + + 
Sbjct: 1022 TVFGIVLTPVFYVLLR 1037



 Score = 47.4 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     LFG   N   +  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSIVGTFAVMHLFGFSVNALTLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
                +       K++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 425 E---GLEPGAATYKAMQEVSGPII-AIALVLVAVFVPLAFITGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAINSL 488


>gi|114764658|ref|ZP_01443843.1| RND multidrug efflux transporter [Pelagibaca bermudensis HTCC2601]
 gi|114542858|gb|EAU45879.1| RND multidrug efflux transporter [Roseovarius sp. HTCC2601]
          Length = 1041

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 92/700 (13%), Positives = 192/700 (27%), Gaps = 47/700 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N     ++   I   G L      LP   + ++P   P                      
Sbjct: 8   NPVLAWVIAIFITLAGALS-----LPSLPVAQYPDVAPPQVT---------ISTRFAGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + +        +        IT++FA          +    L+ 
Sbjct: 54  PEDLYQQVTRPIEEELNGIPNLLYFESTSEATGAVTITVTFASGSSVSQAVVETQNRLRR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIGISEST 180
           V S L    ++  L+        ++             ++  +    R  +++I   E  
Sbjct: 114 VESSLPPQVQQEGLLVEEAGSSYLMFVSLAGAPGSGYDSVGLADYATRFVLNEIRRVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP++L  L  +   ++      N        GV    +    Q
Sbjct: 174 GKAQLF-SAERAMRVWIDPAKLVGLDLSVTDITAAISEQNAQVSAGSVGVDPAPEGQQTQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    ++                 +    +                 I          
Sbjct: 233 ATLLVTGQL-------------RTPAEFGQIVLRAGEDGSIVHLSDVARIEMDAEFYSFK 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L      Q         +   T E    L   L AG        +          S  
Sbjct: 280 AYLNGEEAAQIGIQLSPTGNALDTAEGVRTLLDELSAGFPEGVEASIPYDTTPFVSASIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+ + +   ++ L+    + + +  TLA++   G ++ + ++  +
Sbjct: 340 KVVHTLLEAVALVFVVMLIFLQNLRYTLIPMLVVPIALAGTLAVMLAAGFSINVLTMFAM 399

Query: 421 VLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L IG+ VD  I+V E +      +  S   +      +    I    +  +   + L F
Sbjct: 400 ILAIGILVDDAIVVVENVERIMSEEGLSPREASKKAMGQISGAIVGITLALMAVFIPLAF 459

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           F G      + F++TM +SI  S F A+S+  A+         +K I             
Sbjct: 460 FPGSVGIIYQQFSLTMVVSIFFSAFLALSLTPALCATF-----LKPIPKGQGHARKGPAG 514

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                F RA     G        S  ++  +           +Q+        D   + +
Sbjct: 515 WFNRNFDRASKGYAGGVRGLVRRSGRMMVIYAALVAGLGYVYVQIPAAFLPQEDQGYLIA 574

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +++S             ++     +  +    V   +      +     V   T+++   
Sbjct: 575 SMQSPPEATSFRMREVTKQAEAFAMGTEGVADVVTIQGFSFSGQGPNSAVSFVTLEDWAE 634

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
                       G   +      ML    IR  + FA+  
Sbjct: 635 RESP------ELGAASLAGKLSGMLF--SIRDSFAFAISP 666



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V       +           E   +       G+++     +  +  +++   
Sbjct: 259 SIVHLSDVARIEMDAEFYSFKAYLNGEEAAQIGIQLSPTGNALDTAEGVRTLLDELSAGF 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +            I K +  ++ +   + + + I  +   + L  +  + + + 
Sbjct: 319 PEGVEASIPYDTTPFVSASIEKVVHTLLEAVALVFVVMLIFLQNLRYTLIPMLVVPIALA 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            TL      G   N+  + A++  IG  V+D +VV + +     +    +S R+   K++
Sbjct: 379 GTLAVMLAAGFSINVLTMFAMILAIGILVDDAIVVVENV--ERIMSEEGLSPREASKKAM 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  V  ++A     +P+A + GSV      F++ M   I  +A  ++ +   +
Sbjct: 437 GQISGAIVGITLALMAVFIPLAFFPGSVGIIYQQFSLTMVVSIFFSAFLALSLTPAL 493



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 85/257 (33%), Gaps = 11/257 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L V   +   + +          G      ++G  +  +  +  PG S  +         
Sbjct: 786  LNVRNVQGGMVPLSSFASAEWGFGPSQIVGYNGYPSIRINGEAAPGYSSGEALAEMQRIA 845

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITT 699
                           +   +       +  + + +S + + + +  +   W   L  +  
Sbjct: 846  AELPAGFGYQWTGQSLQEIESGS----QAPILIGLSVLFVFLCLAGLYGSWSIPLAVMLI 901

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + +     +    L G+  ++     ++T++G S  + +++ +  +    L T      D
Sbjct: 902  VPMGAIGAVAAVTLTGLSNDVFFTVGLITIVGLSAKNAILIVEVAKD---LITEGKGLID 958

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIA 816
               ++        + TS+A  + V+PMA+  G    S     I +  G++ A    +  A
Sbjct: 959  ATVEACRLRFRPILMTSLAFTMGVIPMAIATGPSAASQNAIGINVVGGMISATVLGVIFA 1018

Query: 817  APILLFIYDWRAKNARI 833
                +F+      + R+
Sbjct: 1019 PVFFVFVMKLTGTHKRL 1035


>gi|308183697|ref|YP_003927824.1| preprotein translocase subunit SecD [Helicobacter pylori PeCan4]
 gi|308065882|gb|ADO07774.1| preprotein translocase subunit SecD [Helicobacter pylori PeCan4]
          Length = 525

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 155/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALL----- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L +       +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 106 -----LELQGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKDLISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A++ G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALIGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSN T
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNTT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIIGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 71/156 (45%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ +I   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALIGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             ++ 
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNT 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+ + +  +G   I  FA+    GI+ +  ++I
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAI 495


>gi|22127269|ref|NP_670692.1| integral transmembrane protein [Yersinia pestis KIM 10]
 gi|45443157|ref|NP_994696.1| putative integral membrane efflux protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108809348|ref|YP_653264.1| putative integral membrane efflux protein [Yersinia pestis Antiqua]
 gi|108813391|ref|YP_649158.1| integral membrane efflux protein [Yersinia pestis Nepal516]
 gi|149366995|ref|ZP_01889028.1| putative integral membrane efflux protein [Yersinia pestis
           CA88-4125]
 gi|165927113|ref|ZP_02222945.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165939279|ref|ZP_02227828.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|166008688|ref|ZP_02229586.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166211929|ref|ZP_02237964.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|167419805|ref|ZP_02311558.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167425193|ref|ZP_02316946.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|167466567|ref|ZP_02331271.1| integral membrane efflux protein [Yersinia pestis FV-1]
 gi|218928171|ref|YP_002346046.1| putative integral membrane efflux protein [Yersinia pestis CO92]
 gi|229836721|ref|ZP_04456886.1| putative integral membrane efflux protein [Yersinia pestis
           Pestoides A]
 gi|229840928|ref|ZP_04461087.1| putative integral membrane efflux protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842511|ref|ZP_04462666.1| putative integral membrane efflux protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229903864|ref|ZP_04518977.1| putative integral membrane efflux protein [Yersinia pestis
           Nepal516]
 gi|294502816|ref|YP_003566878.1| putative integral membrane efflux protein [Yersinia pestis Z176003]
 gi|21960342|gb|AAM86943.1|AE013940_9 integral transmembrane protein [Yersinia pestis KIM 10]
 gi|45438025|gb|AAS63573.1| putative integral membrane efflux protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777039|gb|ABG19558.1| integral membrane efflux protein [Yersinia pestis Nepal516]
 gi|108781261|gb|ABG15319.1| putative integral membrane efflux protein [Yersinia pestis Antiqua]
 gi|115346782|emb|CAL19667.1| putative integral membrane efflux protein [Yersinia pestis CO92]
 gi|149290609|gb|EDM40685.1| putative integral membrane efflux protein [Yersinia pestis
           CA88-4125]
 gi|165912753|gb|EDR31381.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. IP275]
 gi|165921009|gb|EDR38233.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. F1991016]
 gi|165992027|gb|EDR44328.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Antiqua str. E1979001]
 gi|166206675|gb|EDR51155.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Antiqua str. B42003004]
 gi|166962546|gb|EDR58567.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Orientalis str. MG05-1020]
 gi|167055956|gb|EDR65737.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Yersinia pestis biovar Mediaevalis str. K1973002]
 gi|229679634|gb|EEO75737.1| putative integral membrane efflux protein [Yersinia pestis
           Nepal516]
 gi|229690821|gb|EEO82875.1| putative integral membrane efflux protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697294|gb|EEO87341.1| putative integral membrane efflux protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705664|gb|EEO91673.1| putative integral membrane efflux protein [Yersinia pestis
           Pestoides A]
 gi|262360881|gb|ACY57602.1| putative integral membrane efflux protein [Yersinia pestis D106004]
 gi|262364826|gb|ACY61383.1| putative integral membrane efflux protein [Yersinia pestis D182038]
 gi|294353275|gb|ADE63616.1| putative integral membrane efflux protein [Yersinia pestis Z176003]
 gi|320013689|gb|ADV97260.1| putative integral membrane efflux protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 1039

 Score =  170 bits (430), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 189/686 (27%), Gaps = 47/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITLVGWVS-----LYVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +       L + +           +     + +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAVASPLEAQVNGVSHMLYMESTSANNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       Q    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPQQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP R+  L  +   +       N        G      +
Sbjct: 169 ISGVGDVQVFGARDYSMRVWLDPQRMESLNVSVQDIVAALQQQNVQAAAGQIGSSPSMPN 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  ++                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLTDAR-------------QFADVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A         +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLSAAFPADLTYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL V+++ +   +   +   ++ ++++ T A+L + G +    S
Sbjct: 336 ATLHEIAVSLTLTLIVVLAVVYLFLQSLRATFIVALTVPVSLLGTFAVLYVFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +     N  + S   +     S+    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLSNDPHLSPAEATRQAMSQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V +    G      R FA+T+  ++++S   A+++  A+   +++ + + +  +      
Sbjct: 456 VPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPALCAVLLKRRTLATTGMFGTINK 515

Query: 532 FLIP----DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            L             +  R      ++L    +    ++      +  +      V    
Sbjct: 516 GLDRARDGYVGLTGRINRRAVFSIAALLLVGLATWWGYSRLPTSFLPEEDQGYFFVSLQL 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   S+ R+     Q+      N   E    +        + A      +V   +     
Sbjct: 576 PDGASLNRTQTVMDQMYQQVSTNEAVEDVIKITGFSLLSGNNAPNAGFAIVM--LKPWGQ 633

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
              I             +    I+ V
Sbjct: 634 RPHIDRVLASIQANLAAIPSAMIMAV 659



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P                  + +  V + ++ I +L  +++             T+ +
Sbjct: 316 AAFPADLTYEINYDSTLPVTATLHEIAVSLTLTLIVVLAVVYLFLQSLRATFIVALTVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +      +S  +   
Sbjct: 376 SLLGTFAVLYVFGYSANTLSLFAIILALTIVVDDAIVVVENV-ERLLSNDPHLSPAEATR 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++++  G  + T++      +P+A+     G +   FA+ ++  +++++ +++ ++  +
Sbjct: 435 QAMSQIAGPIIATTLVLMAVFVPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPAL 494

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 495 CAVLLKRR 502



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 69/196 (35%), Gaps = 15/196 (7%)

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                  +         +   +++   +  ++ +    L  +     W   L  + +++  
Sbjct: 845  PQGYSYSWSGMSWQEQQTGGQVVFIYLAALVFAY---LFLVAQYESWSIPLVVVLSVVFA 901

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRKNMKLYTTSISFRDLI 761
            +   +   +  G   ++ A   ++ LIG +  + +++  + + R+         S  +  
Sbjct: 902  VGGAVAGLSAMGFANDVYAQIGLVLLIGLAAKNAILIVEFSKARRE-----EGASIAEAA 956

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAP 818
                 +     + T+++  + V+P+    G   +      I +  G+++A +  I     
Sbjct: 957  QDGAKQRFRAVMMTAISFILGVMPLVFASGAGAMSRQIIGITVFGGMLMATAVGILFIPA 1016

Query: 819  ILLFIYDWRA--KNAR 832
            + L I   R   KN +
Sbjct: 1017 LYLHIQRLREWTKNRK 1032


>gi|312890106|ref|ZP_07749650.1| acriflavin resistance protein [Mucilaginibacter paludis DSM 18603]
 gi|311297638|gb|EFQ74763.1| acriflavin resistance protein [Mucilaginibacter paludis DSM 18603]
          Length = 1042

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/570 (12%), Positives = 168/570 (29%), Gaps = 38/570 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L  +I   G++           +  FPS  P                     
Sbjct: 9   KRPVLATVLSIVIVVFGII-----GYNFLGVRDFPSVDPPIIT---------VTTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +++ + +        +     + IT+ F      E  A+ V   +  
Sbjct: 55  NSDVIESQITEPLEKVINGIPGIRNISSTSSVGSSNITVEFNLDADLETAANDVRDKVGQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D     +  T     +  +    +     + ++            +       
Sbjct: 115 AQRQLPQDIDAPPV-VTKADANADQIITLTVSSNTRNILQIDDYAENVLQQALQTIPGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP++L  L    + +S      N               +     
Sbjct: 174 SVNVQGQRQYAMRLWIDPTKLTALGLAASDISAALNKENVELPAGKIEGNTTELTIRALG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +                      ++      A               +    G 
Sbjct: 234 KLTTEKDF--------------------NNLILKADSAHVIHFSDVGYAILGASNEETGL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +           +   +     +        ++    P     V   N      S S 
Sbjct: 274 KESGIPEVGLAIVPQPGANYVQIAKDFYKRLDQVKKDLPPDIKVEVALDNTRFINQSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+I++++              I +++I T  ++   G ++ + ++ GIV
Sbjct: 334 VEETLLISFVLVVIIIYLFFRDWLIAFRPLIDIPVSLIGTFFIMYAFGFSINILTLLGIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E I ++  +   +  +   G +  +  +  +++T     + + F  
Sbjct: 394 LATGLVVDDGIVVTENIYKKVEEGMPIRKAAFEGSAEIFFAVISTSVTLAAVFLPIVFLP 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
            F G   R FA+ +  S+LIS F ++S+   + + +IR  + KS        FF+     
Sbjct: 454 GFTGRLFREFAVVVAGSVLISAFVSLSLTPMLNVKLIRKNQKKSRFYEKTEPFFVYMTTS 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHG 568
               +        +S++  + S  ++F   
Sbjct: 514 YTDSLVKFMKRKWVSVVILLGSFVIIFFTY 543



 Score = 90.1 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 70/164 (42%), Gaps = 7/164 (4%)

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS + ++I I++ F+ W  A   +  + + +  T      FG   N+  +  ++   G
Sbjct: 338 LLISFVLVVIIIYLFFRDWLIAFRPLIDIPVSLIGTFFIMYAFGFSINILTLLGIVLATG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
             V+D +VV + +    K     +  R    +   E     + TS+      LP+     
Sbjct: 398 LVVDDGIVVTENI---YKKVEEGMPIRKAAFEGSAEIFFAVISTSVTLAAVFLPIVFLPG 454

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + G +   FA+ +A  ++++A  S+ +   + + +     K +R
Sbjct: 455 FTGRLFREFAVVVAGSVLISAFVSLSLTPMLNVKLIRKNQKKSR 498



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 76/200 (38%), Gaps = 7/200 (3%)

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            +  +++   +++   +  +      +   E     +     + + + + +  +F+ +   
Sbjct: 823  IAEMQRIAKDVIKDPSFSSDLAGPSRDYAESSSNILYAFAFALLLIYLVLAAQFESFIDP 882

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               + T+ L I        LF    N+ +   ++TL+G    + +++ +      +    
Sbjct: 883  FVVMLTVPLAIAGAFLSLWLFNQTLNIFSEIGMITLVGLVTKNGILIVEFAN---QRMEH 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
             +S  D + +S    L   + TS+A  +  +P+A     G     S  I +  G++ +  
Sbjct: 940  GLSKLDAVIESATSRLRPILMTSLAVVLGAIPIAFALGAGAKSRVSLGIVIMGGMLFSLV 999

Query: 811  SSIFIAAPILLFIYDWRAKN 830
             ++++   + +       +N
Sbjct: 1000 LTLYVIPMMYVIFSPSVKRN 1019


>gi|197104440|ref|YP_002129817.1| multidrug-efflux system, acriflavin resistance protein
           [Phenylobacterium zucineum HLK1]
 gi|196477860|gb|ACG77388.1| multidrug-efflux system, acriflavin resistance protein
           [Phenylobacterium zucineum HLK1]
          Length = 1060

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 56/490 (11%), Positives = 123/490 (25%), Gaps = 35/490 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +  +GL        PQ  L ++P   P               + +    
Sbjct: 10  RPIFAGVISVFVALLGLFA-----YPQLPLSQYPEIAPPT-------------VAVIASY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG---IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  L +  +  L   +           S      +IT++F      +     V   
Sbjct: 52  PGASAETLAETVAAPLEQEINGVEDMLYMTSSSANGTAQITVTFQPGTDLDAAQVLVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L    ++  +    +    ++L                        D++    
Sbjct: 112 VALAEPRLPEQVRQIGVTVNKQSTGFLMLVALTSKDPSVDVDFVGNYANSSLRDRLLRVP 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    DP +      T  ++       N    G   G         
Sbjct: 172 GVGGVQLFGGGFYSMRVWIDPDKAAARNLTAQEIVAALRGQNVQASGGALGQAPTDAGVA 231

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            +  V+ +  +                 +    +   +   R         +        
Sbjct: 232 TELPVDVQGRLG-------------TPEQFADVVIRTDDQGRVTRVRDVARVELGSQDYS 278

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                            +   +   T E         +A   P     +          S
Sbjct: 279 IRGYFGGERGIGMAVIQQPGSNALSTAEAVLSAVEAAKADFPPGVEYTIPYNPTEYVQAS 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               + T      LV+IV+ + +   +  L+   +I + ++ T A+   LG ++   S+ 
Sbjct: 339 VEAVQHTLIEAVFLVVIVILVFLQTWRAALIPILAIPVALVGTFAVQLALGYSINSLSLF 398

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +VL +G+ VD  I+V E +    R+  S   +           +    +  L   V   
Sbjct: 399 ALVLAVGIVVDDAIVVVENVERNIREGLSPREAAYRTMDEVSGALVAIGLVLLAVFVPTA 458

Query: 479 FFGGGAVRGF 488
           F  G     +
Sbjct: 459 FVPGIPGEFY 468


>gi|254522326|ref|ZP_05134381.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14]
 gi|219719917|gb|EED38442.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14]
          Length = 1049

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 63/552 (11%), Positives = 146/552 (26%), Gaps = 33/552 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +      +     +    +DR+P   P                      
Sbjct: 8   RPIFAWVIAIAVS-----LLGLLAILILPVDRYPQIAPPTIT---------IRATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++ +  L        +     + ++ L FA     +    +V   LQ 
Sbjct: 54  SQTVENAVTQVIEQSQQSLDHLMYMTSTSASDGSAQVNLVFATGTNPDTAQVQVQNQLQA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    ++N L  T        +     +       + +  +  +  DQI       
Sbjct: 114 AMATLPQAVQQNGLTITKSSGSIFEVLSFTSEDGSMDNFDVANFMEARIDDQISRVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++RQ     + +       N        G +          
Sbjct: 174 NIQPIG-QEYAMRIWLDPEKMRQYALMPSDVETALQAQNTDVSAGELGGQPALKGQQLDA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +   +             IG          
Sbjct: 233 TVTARSRL-------------HTPEQFAQVVLKADANGSVVHLGDVATIGLGPESYDSIS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +     +        L+          V          S   
Sbjct: 280 TFNGKPSASLGIELNAGANAIAVSKAIDARLQQLQKYWPHGYTAHVAFTTTPFVTISLKE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VVITLIEAIILVVLVMYLFLQNWRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +         +   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTFEGLAPKPATLKAMGQITGALVGIVLVLTAVFLPMAFF 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F++T+  ++++S+  A++I  A+   I+                  +   
Sbjct: 460 SGVTGVIYRQFSVTIAAAMILSVLVAMTITPALCGSILHQIPKGGHPHGDHGGEPSLLGK 519

Query: 538 IAIQFMRARFWG 549
             I F       
Sbjct: 520 FFIWFNHRFERT 531



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 94/235 (40%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     +  D            L        +++A ++ ++   +++ +  P 
Sbjct: 260 VHLGDVATIGLGPESYDSISTFNGKPSASLGIELNAGANAIAVSKAIDARLQQLQKYWPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            +++ ++ +I + I +++ +++  + W   L     + + +  T
Sbjct: 320 GYTAHVAFTTTPFVTISLKEVVITLIEAIILVVLVMYLFLQNWRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A FG   N   + A++  IG  V+D +VV + +     +    ++ +    K++ +
Sbjct: 380 FGVLAAFGYSINTLTMFALVLAIGLLVDDAIVVVENV--ERVMTFEGLAPKPATLKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V   +      LPMA + G   VI   F++ +A  ++++   ++ I   +
Sbjct: 438 ITGALVGIVLVLTAVFLPMAFFSGVTGVIYRQFSVTIAAAMILSVLVAMTITPAL 492



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 83/263 (31%), Gaps = 18/263 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +   A + V LS + S   +     +   N         +         
Sbjct: 782  RMQPQDIERWSVRNQAGQMVPLSSLISTHWTSAPAALQRYNGVSAMEITGQPAPGVSSGE 841

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +            +    +         ++        IS + + + +   ++
Sbjct: 842  AMAEIARLADTLPEGFSHAWSDMAYQEQLSGNQAPMLY------AISLLFVFLCLAALYE 895

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRK 746
             W      +  + + +   +    L G+  ++     +LT IG +  + +++  + R+ +
Sbjct: 896  SWAVPFAVMLAVPVGVFGAVLMMNLRGLNNDVYFQVGLLTTIGLAAKNGILIVEFARILE 955

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                     S R+ I +++   L   V TS+A  + VLP+      G +   S    +A 
Sbjct: 956  -----QQGKSTREAILQAVYLRLRPIVMTSLAFLMGVLPLVFATGAGSAARRSLGTGVAG 1010

Query: 804  GIVVAASSSIFIAAPILLFIYDW 826
            G V +    +F   P+   +   
Sbjct: 1011 GTVASMVLGMFFV-PLFYLLVRR 1032


>gi|291513923|emb|CBK63133.1| The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile
           Efflux-1 (HAE1) Family [Alistipes shahii WAL 8301]
          Length = 1045

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 70/622 (11%), Positives = 174/622 (27%), Gaps = 38/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + + L  +I  +GL+  +        ++++P   P                  +  +
Sbjct: 8   RPIFAISLAIVIVLVGLISIM-----GLPIEQYPDITPPVVE---------VSATYDGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFLQG 121
            + VN  +     +    +        +     + +  ++F      +  A      +  
Sbjct: 54  AETVNNAVATPVAQAVMGVSDMLYMQATSANDGSMVLQVTFDIGSDPDLDAIFTQNNVSS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L     +  + T       +++   +           S        +++   +   
Sbjct: 114 ATAELPATVTRQGVTTRKTMTGFLMVYSLHS-DGRYDGEFLSNYAYINLQNELLKIDGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P  L+       +++              FG     D     Y
Sbjct: 173 KVSIMGAGEYAMRVWLRPDVLKYYGIAVGEVTAAIEKQGGIYPAGQFGAEPAPDGVAYTY 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +IS                +    +        +        +           
Sbjct: 233 TVTMPPQIS-------------TAAEFADIVVRTTSSGEQIRLGDIAEVSLGSQTYGVSS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +      +   +   +              L               +  +       
Sbjct: 280 SYESDPTAMIVIYQQPGSNAVAVGGKVKAAMERLSQRFPDGVEAATIVDSTTSIDAGVKD 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+ ++F+ +   +  ++   +I ++++   AL  LLG ++ + S+ G+V
Sbjct: 340 IFRTLVIALILVIFIIFLFLQDWRATVIPLVAIPVSLVGAFALFPLLGFSINIISLLGLV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E  +    +      +         S I  + +  L   + + F G
Sbjct: 400 LAIGLVVDDAIVVVEAAQVNIERGMKPREAALEAMRNVASPIVATTVVLLAVFIPVSFTG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---KMKSIDINPLSRFFLIP 535
              G   + F++T+ +S++IS F A+++  A+   ++R +   +              + 
Sbjct: 460 GITGRLFQQFSVTIAVSVVISAFNALTLSPALCALLLRRREPSQKGFFAAFNRWFARQMD 519

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANRPVDLS 592
              A      R        +  +  +  +    L  G    + +G + + V       L 
Sbjct: 520 RYTAFTPTLMRHVARTGVFVAVVLGVIFVVWRKLPAGFLPEEDQGYVMVMVSTPEASSLQ 579

Query: 593 VVRSNLESLQIGDISFQNFDGE 614
           V R  +        +       
Sbjct: 580 VTRQAMADADAVIRTLPEVAST 601



 Score = 90.5 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 99/256 (38%), Gaps = 9/256 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              +   + L  +       Q   +S          +V  Q    ++VA    ++   ++
Sbjct: 253 TTSSGEQIRLGDIAEVSLGSQTYGVSSSYESDPTAMIVIYQQPGSNAVAVGGKVKAAMER 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF--KWYFALGAITT 699
           +++  P      T +         ++     ++I+ I + I+I   F   W   +  +  
Sbjct: 313 LSQRFPDGVEAATIVDSTTSIDAGVKDIFRTLVIALILV-IFIIFLFLQDWRATVIPLVA 371

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +      F L G   N+ ++  ++  IG  V+D +VV +  + N+      +  R+
Sbjct: 372 IPVSLVGAFALFPLLGFSINIISLLGLVLAIGLVVDDAIVVVEAAQVNI---ERGMKPRE 428

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              +++       V T++      +P++  GG        F++ +A  +V++A +++ ++
Sbjct: 429 AALEAMRNVASPIVATTVVLLAVFIPVSFTGGITGRLFQQFSVTIAVSVVISAFNALTLS 488

Query: 817 APILLFIYDWRAKNAR 832
             +   +   R  + +
Sbjct: 489 PALCALLLRRREPSQK 504



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 80/818 (9%), Positives = 206/818 (25%), Gaps = 61/818 (7%)

Query: 53   GSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG---VFSMRQIQNKITLSFADSRFKE 109
            G      V     ++   +     +R+    E I    +  +        +S +      
Sbjct: 227  GVAYTYTVTMPPQISTAAEFADIVVRTTSSGEQIRLGDIAEVSLGSQTYGVSSSYESDPT 286

Query: 110  NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
             +            +           ++    +     +  +    I   ++   +I R 
Sbjct: 287  AMIVIYQQPGSNAVAVGGKVKAAMERLSQRFPDGVEAATIVDSTTSIDAGVK---DIFRT 343

Query: 170  RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
             +  + +    I           +P    P  L         + F       S  G +  
Sbjct: 344  LVIALILVIFIIFLFLQDWRATVIPLVAIPVSLVGAFALFPLLGFSI--NIISLLGLVLA 401

Query: 230  VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
            +  + D               G+    A          P+V  +   +        T   
Sbjct: 402  IGLVVDDAIVVVEAAQVNIERGMKPREAALEAMRNVASPIVATTVVLLAVFIPVSFTGGI 461

Query: 290  IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
             G+            A  +  +  +          +       +     +   +    + 
Sbjct: 462  TGRLFQQFSV---TIAVSVVISAFNALTLSPALCALLLRRREPSQKGFFAAFNRWFARQM 518

Query: 350  RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL------- 402
                A   +   +     +   +VL V+F++      G + +      +++         
Sbjct: 519  DRYTAFTPTLMRHVARTGVFVAVVLGVIFVVWRKLPAGFLPEEDQGYVMVMVSTPEASSL 578

Query: 403  -----------ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
                       A++  L    +    AG  +  G+A  S+ ++  ++ + + +  S    
Sbjct: 579  QVTRQAMADADAVIRTLPEVASTSFAAGFNMMAGIASTSSGIIFVKLVDYSDRRLSAMQI 638

Query: 452  LDMGFSRAYSTIFDSNITALIATVVLFF-------FGGGAVRGFAITMGLSILISMFTAI 504
                    Y  +  +   A I   +               + G      +     +  ++
Sbjct: 639  AQRLTGELYVAVPGAECYAFIPPSIPGLGVTSGVSVEVQDLEGRGTAYLMENAGRLMDSL 698

Query: 505  SIVRAMMIF---IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
                A+             + + I+         D   +        G      F+    
Sbjct: 699  RKNPAIASVTTQFDAGVPQRRLRIDKQQALAAGVDLGTLYGELTTLLGGAYINNFTRFGK 758

Query: 562  CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                                          SV  ++L  +                 V L
Sbjct: 759  LYQTYIQAAPDYRLDRRSLDSYYVTSASGESVPVASLIDVADTVGVEYVSQFNLYRSVSL 818

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               P    + T V+  +     E +P            + +      G   ++ +   + 
Sbjct: 819  TVTPAARASTTTVMREITATAAETLPDDIGTAWSGTSYQEANASKTGG---LVYALALVF 875

Query: 682  IYIWI---RFKWYFALGAI----TTLILDITKTLGFFALFGIEFNLTAV-AAVLTLIGYS 733
            +++ +      W   L  +      ++  +    G   +  +  N   +  +++ LIG +
Sbjct: 876  VFLALAALYESWGLPLAILMSVPVAVLGAVLFVGGTHLMNSLYVNDIYMQISLVMLIGLA 935

Query: 734  VNDKVVVY---DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
              + ++V    DR+ +         S  D    +    +   + T+ A  + V+P+    
Sbjct: 936  AKNAILVVEYADRLFRE-----QGASLMDAAIGAAKLRVRPIIMTAFAFILGVMPLVFAS 990

Query: 791  GS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G          + +  G++ A    IF+   +  F+  
Sbjct: 991  GVYATARNIMGVALVGGMLFATLLGIFVYPALYYFVGK 1028


>gi|262043874|ref|ZP_06016962.1| multidrug efflux pump BpeF [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038728|gb|EEW39911.1| multidrug efflux pump BpeF [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1050

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 57/505 (11%), Positives = 134/505 (26%), Gaps = 32/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPNGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPQESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 FGGGAVRGFAITMGLSILISMFTAI 504
             G   + +        + ++ +AI
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAI 485



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     +   +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRRKPV 1044



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 89/266 (33%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+      ++ +   P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMAEL-ATRFPEDMQWAAPYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                   + +L+ I     W  ++  +  + + +  T     L G   N  ++  ++  
Sbjct: 345 QTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487


>gi|197287402|ref|YP_002153274.1| multidrug efflux pump [Proteus mirabilis HI4320]
 gi|194684889|emb|CAR47042.1| multidrug efflux pump [Proteus mirabilis HI4320]
          Length = 1044

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/684 (10%), Positives = 180/684 (26%), Gaps = 42/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G L  +     +  + ++P       +            V     
Sbjct: 8   RPILSWVMAIVIMIAGGLSLI-----KLPVSQYPEIAAPAIM---------ITAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  S L        +     + ++  +F      +    +V   LQ 
Sbjct: 54  AETVQDTVVQVIEQELSGLDGFRYLSSNSNTDGSFEVIATFEQGTDSDIALMQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL ++ ++  +     +   + +     +     A +    +     D I   +   
Sbjct: 114 ATPKLPLEVQRQGMRVVKFQINFMQVVALVDESGKLDAFDLGNYLASHMKDPISRIDGMG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP +L         ++      N                     
Sbjct: 174 DILLLGSPR-AMRIWLDPDKLTNYHLMPQDIAAAIQDENVQVSAGQLAGLPALKGVELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +  +                   +    +   +        +           
Sbjct: 233 TITSASRMVSVDEFNH-------------ILLKVNLDGSQVLLQDVAKVEVGADNFSISS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +     +    +              +       +   S S 
Sbjct: 280 LYNGKPSAGMAMRLAPGANLLDVSKKVKEVVEAQSQFFPQGVKALFPYDTTPSVKSSISS 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    + LV +V+F+ +   +  LV   +I + ++ T  +L+ LG T+ + ++  +V
Sbjct: 340 VVRTIVEASILVFLVMFLFLQNIRATLVPTLAIPVVLLGTFGVLAALGLTINVLTMYAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     +   SV  +  +  ++    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMHEQAISVKEATILSMTQIQGALVGIGLVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFFLIP 535
           GG      R FA T+ +++ +S+  A++   A+   I++  +   K              
Sbjct: 460 GGSAGIIYRQFAATIVVAMALSVLIALTFTPALCASILKKPQPKVKKRRGFFWLFNRFFD 519

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID-------FKGGIQLGVLANRP 588
                     R           I  I  + T  L   +         +G + + V     
Sbjct: 520 RGTNYYEKGVRNILYRRGRYMFIFLIITVGTGWLFTQLPKAFLPNEDQGVVMIEVRMPAN 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +   +   +   ++ +    +  F V      G           +          
Sbjct: 580 STAERMEQTMAEFRDYLLTEEKHLVKTVFTVNGFNFAGRGQNAGMAFVNLADWSERKGKG 639

Query: 649 STIQNTEIVGPKISRELIRKGIVG 672
             + +      +    +    ++ 
Sbjct: 640 EDVFSLVARAQQHFNSIRDGMVIA 663



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 78/208 (37%), Gaps = 8/208 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S     V+E   +   + V      +T          ++R  +   I+  + M +++   
Sbjct: 303 SKKVKEVVEAQSQFFPQGVKALFPYDTTPSVKSSISSVVRTIVEASILVFLVMFLFLQ-- 360

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + +  T G  A  G+  N+  + A++  IG  V+D +VV + +   
Sbjct: 361 -NIRATLVPTLAIPVVLLGTFGVLAALGLTINVLTMYAMVLAIGLLVDDAIVVVENV--E 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFG 804
             ++  +IS ++    S+ +  G  V   +      +PMA +GGS   +   FA  +   
Sbjct: 418 RIMHEQAISVKEATILSMTQIQGALVGIGLVLSAVFVPMAFFGGSAGIIYRQFAATIVVA 477

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + ++   ++     +   I        +
Sbjct: 478 MALSVLIALTFTPALCASILKKPQPKVK 505



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 10/164 (6%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA--LFGIEFNLTAVAAVLTLI 730
            +++ + + + +   ++ W         L++         A  L G+  ++     ++T I
Sbjct: 875  VMTILFVFLSLAALYESWSVPFS--VALVVPFGILGAVIATLLRGLSSDVYFQIGLMTTI 932

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G S  + +++ +  +             D   ++    L   + TS+A    VLPMA+  
Sbjct: 933  GLSAKNAILIVEFAK--HLYEKDGKPLIDAAAEAARMRLRPIIMTSLAFTFGVLPMALAA 990

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G     S A  +  G++ +   +IF      +F+    ++  
Sbjct: 991  GAGQGSQHSVATGVIGGMLASTFLAIFFVPLFYVFVVKLFSRKK 1034


>gi|51597606|ref|YP_071797.1| RND family drug efflux protein [Yersinia pseudotuberculosis IP
           32953]
 gi|186896742|ref|YP_001873854.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590888|emb|CAH22544.1| RND family drug efflux pump [Yersinia pseudotuberculosis IP 32953]
 gi|186699768|gb|ACC90397.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 1039

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/686 (10%), Positives = 189/686 (27%), Gaps = 47/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITLVGWVS-----LYVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +       L + +           +     + +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAVASPLEAQVNGVSHMLYMESTSANNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       Q    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPQQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP R+  L  +   +       N        G      +
Sbjct: 169 ISGVGDVQVFGARDYSMRVWLDPQRMESLNVSVQDIVAALQQQNVQAAAGQIGSSPSMPN 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  ++                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLTDAR-------------QFADVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A         +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLSAAFPADLTYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL V+++ +   +   +   ++ ++++ T A+L + G +    S
Sbjct: 336 ATLHEIAVSLTLTLIVVLAVVYLFLQSLRATFIVALTVPVSLLGTFAVLYVFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +     N  + S   +     S+    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLSNDPHLSPAEATRQAMSQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V +    G      R FA+T+  ++++S   A+++  A+   +++ + + +  +      
Sbjct: 456 VPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPALCAVLLKRRTLATTGMFGTINK 515

Query: 532 FLIP----DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            L             +  R      ++L    +    ++      +  +      V    
Sbjct: 516 GLDRARDGYVGLTGRINRRAVFSIAALLLVGLATWWGYSRLPTSFLPEEDQGYFFVSLQL 575

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   S+ R+     Q+      N   E    +        + A      +V   +     
Sbjct: 576 PDGASLNRTQTVMDQMYQQVSTNEAVEDVIKITGFSLLSGNNAPNAGFAIVM--LKPWGQ 633

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGV 673
              I             +    I+ V
Sbjct: 634 RPHIDRVLASIQANLAAIPSAMIMAV 659



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P                  + +  V + ++ I +L  +++             T+ +
Sbjct: 316 AAFPADLTYEINYDSTLPVTATLHEIAVSLTLTLIVVLAVVYLFLQSLRATFIVALTVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +      +S  +   
Sbjct: 376 SLLGTFAVLYVFGYSANTLSLFAIILALTIVVDDAIVVVENV-ERLLSNDPHLSPAEATR 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++++  G  + T++      +P+A+     G +   FA+ ++  +++++ +++ ++  +
Sbjct: 435 QAMSQIAGPIIATTLVLMAVFVPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPAL 494

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 495 CAVLLKRR 502



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/196 (11%), Positives = 69/196 (35%), Gaps = 15/196 (7%)

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                  +         +   +++   +  ++ +    L  +     W   L  + +++  
Sbjct: 845  PQGYSYSWSGMSWQEQQTGGQVVFIYLAALVFAY---LFLVAQYESWSIPLVVVLSVVFA 901

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRKNMKLYTTSISFRDLI 761
            +   +   +  G   ++ A   ++ LIG +  + +++  + + R+         S  +  
Sbjct: 902  VGGAVAGLSAMGFANDVYAQIGLVLLIGLAAKNAILIVEFSKARRE-----EGASIAEAA 956

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAP 818
                 +     + T+++  + V+P+    G   +      I +  G+++A +  I     
Sbjct: 957  QDGAKQRFRAVMMTAISFILGVMPLVFASGAGAMSRQIIGITVFGGMLMATAVGILFIPA 1016

Query: 819  ILLFIYDWRA--KNAR 832
            + L I   R   KN +
Sbjct: 1017 LYLHIQRLREWTKNRK 1032


>gi|262384318|ref|ZP_06077453.1| cation/multidrug efflux pump [Bacteroides sp. 2_1_33B]
 gi|262294021|gb|EEY81954.1| cation/multidrug efflux pump [Bacteroides sp. 2_1_33B]
          Length = 1052

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 63/554 (11%), Positives = 160/554 (28%), Gaps = 33/554 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GLL           + +FP  +P +                   
Sbjct: 7   RRPILSGVISVVIVFLGLLAI-----NSLPITQFPDIVPPSVT---------VTARYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D +   +    +   + +                +T + F      +  +  V   + 
Sbjct: 53  NADVMAKTVATPLERAINGVPGMTYMTSVCTNDGMSLTTIYFKVGTDPDVASVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  ++T  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVITEKEVNSMLMYLNIMSSDSTHTEKFVYNFADINILRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P+RL     +  +++      N        G+   +     Q
Sbjct: 173 GFVEIMGSRDYAMRVWLNPNRLAAYNMSPQEVTEAIRSQNIEAAPGKTGISSDKIPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++              +       +    +                 I          
Sbjct: 233 YVLQ-------------YSGKFSTPEEYGEIVLKALPDGSVLRLKDVATIEFDSEDYNMI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA-GSLPIKLNIVEERNVGADLGSD 359
            +         +   +   +    I+        L+     P     +          S 
Sbjct: 280 SMTDGKPSASIMIKQRPGSNAREVIQQIKAKMEELKETTFAPGMEYNISYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S+   T      LV IV+++ +   +  L+   ++ +++I T   + +LG ++ + ++  
Sbjct: 340 SVVLKTLLEAFILVFIVVYLFLQDFRSTLIPAIAVPVSLIGTFFFMQMLGFSINMLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IG+ VD+ I+V E +  + + +      +           I    +      + + 
Sbjct: 400 LVLAIGIVVDNAIVVVEAVHVKMHNEKLPPLKATKKAIGEIGGAIIAITLVMSAVFIPVG 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F  G      R F++T+ ++I+IS   A+++  A+   +++           L   F   
Sbjct: 460 FMDGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLKPVSHSKKQKKNLLARFFDG 519

Query: 536 DCIAIQFMRARFWG 549
                 F+  R+  
Sbjct: 520 FNSRYDFLERRYRL 533



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 90/243 (37%), Gaps = 9/243 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +S     IS  +     + +++ +          ++   +++            N   
Sbjct: 270 EFDSEDYNMISMTDGKPSASIMIKQRPGSNAREVIQQIKAKMEELKETTFAPGMEYNISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I   +  ++ + I + I +++    +   L     + + +  T  F  + G
Sbjct: 330 DVSRFLDASISVVLKTLLEAFILVFIVVYLFLQDFRSTLIPAIAVPVSLIGTFFFMQMLG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+  + A++  IG  V++ +VV + +   +K++   +       K+I E  G  +  
Sbjct: 390 FSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHNEKLPPLKATKKAIGEIGGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD---WRAK 829
           ++      +P+    G+V      F++ +A  IV++  +++ ++  +   +        K
Sbjct: 448 TLVMSAVFIPVGFMDGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLKPVSHSKK 507

Query: 830 NAR 832
             +
Sbjct: 508 QKK 510



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 74/254 (29%), Gaps = 15/254 (5%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +         +    +  +      +  L       G++       E +         + 
Sbjct: 793  NKEGNMVPYSNFMTMERVYGPSQITRYNLFTSAMITGEAAPGVSSGEALVAVEEIASEVL 852

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                          E    G   VI +     +Y+ +          L  I +L   +  
Sbjct: 853  PRGYDTEWSGVAKEEKESGGQTLVIFAICLAFVYLLLAAQYESLLLPLPVILSLPAGVFG 912

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSI 765
            +     + G+E N+ A  A++ LIG    + +++     +         IS      +  
Sbjct: 913  SFFLLYVVGLENNIYAQVALVMLIGLLGKNAILII----EVANQCRKEGISVMGAAIQGA 968

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS A    ++P+    G   +   S     A G+++     IF+   + + 
Sbjct: 969  TSRLRPILMTSFAFISGLIPLTIASGAGALGNRSIGTAAAGGMLIGTFVGIFLIPGLYVI 1028

Query: 823  IYD----WRAKNAR 832
                   ++ +  +
Sbjct: 1029 FESLATYFKKRKEK 1042


>gi|226228278|ref|YP_002762384.1| multidrug resistance protein [Gemmatimonas aurantiaca T-27]
 gi|226091469|dbj|BAH39914.1| multidrug resistance protein [Gemmatimonas aurantiaca T-27]
          Length = 1068

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/556 (10%), Positives = 157/556 (28%), Gaps = 39/556 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L   +  +G+         +  +D FP                    +    
Sbjct: 22  RRPVFTTMLMVGLIVLGIF-----GYSRLAIDEFPDVDIPVVT---------VQTIYPGA 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  + ++          +  +++ + F      +  A  +   ++ 
Sbjct: 68  SAEVIEREVSRRMEEAFNPVQGVDRITSVSLEGVSQVVVEFDLGVAVDVAAQDIRTKIET 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    ++     +   I+    +   +    +E +         Q+       
Sbjct: 128 IRRDLPEDIDPPVVQKLDPQAQPILSLALSSKTLPM--VELTTFADEDLRRQLEQVSGVG 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +  +  ++     P+ L     T  ++       N                   Q 
Sbjct: 186 EVRLAGGLAREIRVNLLPAELEARGVTVPEVMGALQAQNLEVPAGRVE----------QG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E  V ++G   +               D+       +         +           
Sbjct: 236 ANERIVRVTGRITDAK----------QFEDVIVALRNGQPVRVRDVARVEIGTEEERSLA 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++             +  +     +        LR          V   N      S   
Sbjct: 286 LVNGERALSIDVVKVSGANTVAVADGVQAALTKLRTTLPAGVELQVIRDNSVNIRHSVDD 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L ++++ + +   K   +   ++ ++VI +  L+S+LG TL + ++  + 
Sbjct: 346 VIKELLIGALLTIVIVMLFLNDWKATAITSLALPVSVISSFVLMSVLGFTLNMITLMALS 405

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ +D  I+V E I       +  F +   G +     +  + +  +   V + F  
Sbjct: 406 LSIGILIDDAIVVVENIVRHREMGRDHFTAARTGTAEIVLAVLATTLAIVAVFVPVAFMQ 465

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+  ++L+S+F + ++   +  +      +            +     
Sbjct: 466 GIIGRFFYQFGLTVAWAVLVSLFVSFTLTPMLSAWWGVNPHVAGAHGGNWLTRKIAGFNT 525

Query: 539 AIQFMRARFWGVGISI 554
                 A++  +    
Sbjct: 526 WFDRQAAKYRSIITWA 541



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 59/155 (38%), Gaps = 6/155 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I + + ++I +     W         L + +  +    ++ G   N+  + A+   IG 
Sbjct: 351 LIGALLTIVIVMLFLNDWKATAITSLALPVSVISSFVLMSVLGFTLNMITLMALSLSIGI 410

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++D +VV + +   ++                 E +   + T++A     +P+A   G 
Sbjct: 411 LIDDAIVVVENI---VRHREMGRDHFTAARTGTAEIVLAVLATTLAIVAVFVPVAFMQGI 467

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +      F + +A+ ++V+   S  +   +  +  
Sbjct: 468 IGRFFYQFGLTVAWAVLVSLFVSFTLTPMLSAWWG 502



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 55/140 (39%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   +  + +L L +   L    L G   N+ ++  V+ L+G  V + +++ D   +  
Sbjct: 897  SFTQPIAIMLSLPLSLVGVLLALILTGSTLNMMSMIGVIMLMGLVVKNAILLVDNANERR 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                        + ++    L     T++A  + ++P+A+    GG      A  +  G+
Sbjct: 957  AG---GADRFTALVEAGAVRLRPITMTTLAMVVGMIPVALGLGEGGGFRSPMARAVIGGL 1013

Query: 806  VVAASSSIFIAAPILLFIYD 825
            + +   ++ +      ++ D
Sbjct: 1014 ITSTMLTLIVVPVAYSYLDD 1033


>gi|330827394|ref|YP_004390632.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Alicycliphilus denitrificans K601]
 gi|329312702|gb|AEB87116.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Alicycliphilus denitrificans K601]
          Length = 1055

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 69/575 (12%), Positives = 163/575 (28%), Gaps = 40/575 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +GL+       P   +  +P  +P               + +    
Sbjct: 10  RPIFAAVLSIIIFVVGLIAI-----PLLPVSEYPEVVPP-------------SVQVRATY 51

Query: 63  DDFV-NGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                       +  L + +   E +         + +   T++F      ++   KV  
Sbjct: 52  PGANPREIADTVAAPLEASITGVENMLYMKSVAGSDGVLVLTVTFRPGTDPDDAQVKVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    ++  +VT  +     ++ Q         A+      +    D++   
Sbjct: 112 RVAQAEPRLPEAVRQQGVVTVKQSHNETLVVQLRSPGDRYDALYLRNYAVLHVRDELARI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP ++  L  T   +       N        G        
Sbjct: 172 QGVGDAKIYGSGDYAMRLWLDPDKIAALGMTAGDVVEAVREQNVQVSAGQLGAPPNPSGS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I       +         +    +  
Sbjct: 232 DFLLSINAQGRLVTEE-------------EFGDVIVKTGSQGQVTRLRDVARVEMDASSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L                +     +        L           VE  +      
Sbjct: 279 SLMSLLNNKPAVAISVLEAPGANAIEISDQVRAKMDELAKRFPEGVEWSVEYDSTVFVRQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV++V+ + +   +  ++   ++ ++V+ T A+L +LG ++   ++
Sbjct: 339 SIKAVVNTLLEAIGLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAVLLMLGFSINTLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIAT 474
            G+VL IG+ VD  I+V E +     +  +   +           I   +    +  +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIAEGLAPLAAAHQAMREVSGPIVAISLVLCSVFVPM 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFL 533
             L    G   + FA+T+ +S +IS   ++++  A+    +  +     +    L R   
Sbjct: 459 AFLSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAARLLRPHGAAPDLPTRVLDRSLG 518

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                  +F      G G S+   +     +F   
Sbjct: 519 WIFRPFNRFFLRSADGYGNSVSRILGRRGAVFLVY 553



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   +    L G + N+     ++ LIG +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMSLLSAMTGVWLAGGDSNIFVQIGLIVLIGLASKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L     S  D   ++    L   + TS+A    V+P+ V    G  +     + +  G+
Sbjct: 958  -LERKGHSILDAALEASRLRLRPIIMTSIAFIAGVVPLMVGSGAGAEIRQVMGVTVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +     +  R
Sbjct: 1017 LGVTLFGLFLTPVFYVALRRLATRKPR 1043



 Score = 45.1 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 10/126 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     + G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSVVGTFAVLLMLGFSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                ++      +++ E  G  V  S+      +PMA   G        FA+     I 
Sbjct: 425 E---GLAPLAAAHQAMREVSGPIVAISLVLCSVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASSS 812
           ++   S
Sbjct: 478 ISTVIS 483


>gi|116751097|ref|YP_847784.1| acriflavin resistance protein [Syntrophobacter fumaroxidans MPOB]
 gi|116700161|gb|ABK19349.1| acriflavin resistance protein [Syntrophobacter fumaroxidans MPOB]
          Length = 1057

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 63/574 (10%), Positives = 146/574 (25%), Gaps = 46/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD- 61
              +  ++  ++   G L           + ++P   P +               + VD 
Sbjct: 9   RPVFAWVIAIIMMVAGGLAI-----YNLPIAQYPPIAPPS---------------IAVDS 48

Query: 62  -EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKV 115
                    ++      +   +        +   S     ++I L+F      +    +V
Sbjct: 49  FYPGASAETVENSVTQIIEQKMTGLDKMLYLKSSSDSSGASRIELTFVPGTDPDLAWAQV 108

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              LQ   + L    ++  +  +      ++L     +       +            + 
Sbjct: 109 QNKLQLAMASLPEVIQQQGVKVSKSTRNWLILVGLISEDGSMDGNDLRDYAKSNLEKVLA 168

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 +          +    DP +L     T   +       N       FG      
Sbjct: 169 RVPGVGEVEAFGT-EYAMRVWIDPDKLTNYHLTIEDVISALRAYNVEVSAGQFGGAPAVQ 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  +  +  +                 +                            
Sbjct: 228 GQRMNASIIVQSLLRA-------------PEEFAAIPVRLNPDGSAVRIRDVARTELGTE 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                                A  +   T +        +     P    +         
Sbjct: 275 TYDVVAFHNGRPAAGLAIRQSAGANALATADAIKAKMEEMSRYFPPGMKVVYPYDTTPFV 334

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      T      LV +V+++ +   +  L+   ++ + ++ T A+L L G ++ + 
Sbjct: 335 RVAIEEVVKTLFEAILLVFLVMYLFMGNIRATLIPTIAVPVVILGTFAVLGLFGFSINML 394

Query: 416 SIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IGL VD  I+V E +      +      +      +  S +    +      
Sbjct: 395 TMFAMVLAIGLLVDDAIVVVENVERIMSEEGLPPKEATRKSMDQITSALIGIGLVLSAVF 454

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSR 530
             + FFGG      R F++T+  S+L+S+  A+ +   +    +    K      + +  
Sbjct: 455 GPMAFFGGSTGVIYRQFSVTIIASMLLSVLVALILTPVLCASLLRPVPKGHQPSDHAIFF 514

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                      F RAR   +             L
Sbjct: 515 LRPFFRLFDAAFYRARDLYIRAVGHALAKKFRYL 548



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 78/198 (39%), Gaps = 9/198 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    +E + +     + +    +T         E+++     +++  + M +++ 
Sbjct: 302 ATADAIKAKMEEMSRYFPPGMKVVYPYDTTPFVRVAIEEVVKTLFEAILLVFLVMYLFMG 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + I  T     LFG   N+  + A++  IG  V+D +VV + + 
Sbjct: 362 ---NIRATLIPTIAVPVVILGTFAVLGLFGFSINMLTMFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +  ++   KS+++     +   +       PMA +GGS       F++ + 
Sbjct: 418 -ERIMSEEGLPPKEATRKSMDQITSALIGIGLVLSAVFGPMAFFGGSTGVIYRQFSVTII 476

Query: 803 FGIVVAASSSIFIAAPIL 820
             ++++   ++ I  P+L
Sbjct: 477 ASMLLSVLVAL-ILTPVL 493


>gi|290510943|ref|ZP_06550312.1| multidrug efflux transporter MexF [Klebsiella sp. 1_1_55]
 gi|289775936|gb|EFD83935.1| multidrug efflux transporter MexF [Klebsiella sp. 1_1_55]
          Length = 1050

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 149/550 (27%), Gaps = 35/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPNGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPQESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMKWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++    K      L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAALLLKPHGAKKDLPTRLIDRLFGWI 520

Query: 537 CIAIQFMRAR 546
                    R
Sbjct: 521 FRPFNRFFLR 530



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     +   +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRRKPV 1044



 Score = 45.8 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 89/266 (33%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+      ++ +   P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMAEL-ATRFPEDMKWAAPYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                   + +L+ I     W  ++  +  + + +  T     L G   N  ++  ++  
Sbjct: 345 QTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487


>gi|238896071|ref|YP_002920807.1| integral transmembrane protein for acridine resistance [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548389|dbj|BAH64740.1| integral transmembrane protein for acridine resistance [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 1050

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 149/550 (27%), Gaps = 35/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPNGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPQESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++    K      L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAALLLKPHGAKKDLPTRLIDRLFGWI 520

Query: 537 CIAIQFMRAR 546
                    R
Sbjct: 521 FRPFNRFFLR 530



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     +   +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRRKPV 1044



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 89/266 (33%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+      ++ +   P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMAEL-ATRFPEDMQWAAPYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                   + +L+ I     W  ++  +  + + +  T     L G   N  ++  ++  
Sbjct: 345 QTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487


>gi|152995047|ref|YP_001339882.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Marinomonas
           sp. MWYL1]
 gi|150835971|gb|ABR69947.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Marinomonas sp. MWYL1]
          Length = 1035

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 68/543 (12%), Positives = 154/543 (28%), Gaps = 41/543 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G+L       PQ  + R+PS  P               + +    
Sbjct: 8   RPIFAWVLALFIILGGVLSI-----PQLPIARYPSIAPP-------------SVSIMATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L            +       IT++F      +     V  
Sbjct: 50  PGANPQTMNDAVLSLIERELSGVKNMLYFESSADGSGSASITVTFKPGTDPKLAQVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V ++L    ++N L   +     +++     D         S  + R  +++    
Sbjct: 110 KIKAVEARLPQAVRQNGLSVESATSSFLMIVGLKSDDGRFTETSLSDYMSRNLLEEFRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP++L     T A ++      N        G        
Sbjct: 170 DGVGNVQLFGS-EQAMRIWVDPNKLTSYGLTMADLTTAITQQNTQIAPGSVGASPSVIGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++S                +    +        +        +       
Sbjct: 229 RVTVPLTVQGQLS-------------SPEEFASIVVRARTDGSKIVLSDVARVEIGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                    V   A        +   T          L           +          
Sbjct: 276 GFSNRENGKVSTSAAIQLAPGANAVSTSNKVLARMEELGRTMPAGMSYSIPFNTAPFVKV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+      + ++ T +++ L G ++ + ++
Sbjct: 336 SIEKVIYTLLEAMALVFLVMFLFLQNIRYTLIPAIVAPIALLGTFSIMLLAGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +     ++  S   +      +    +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVVENVERIMAKEGLSPKDATVKAMRQITGAVVSITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      + F+++M +SIL S F A+++  A+   +++    K         +F 
Sbjct: 456 MAFASGSVGVIYQQFSLSMAVSILFSAFLALTLTPALCATLLKPHTEKDFKKTGFFGWFN 515

Query: 534 IPD 536
              
Sbjct: 516 RTF 518



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + LS V       Q    S +                 ++V+ +  +    +++   +
Sbjct: 258 SKIVLSDVARVEIGAQSYGFSNRENGKVSTSAAIQLAPGANAVSTSNKVLARMEELGRTM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I K I  ++ +   + + +++  +   + L       + + 
Sbjct: 318 PAGMSYSIPFNTAPFVKVSIEKVIYTLLEAMALVFLVMFLFLQNIRYTLIPAIVAPIALL 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N+  +  ++  IG  V+D +VV + +     +    +S +D   K++
Sbjct: 378 GTFSIMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMAKEGLSPKDATVKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  G  V  ++      +PMA   GSV      F++ MA  I+ +A  ++ +   +   
Sbjct: 436 RQITGAVVSITLVLTAVFIPMAFASGSVGVIYQQFSLSMAVSILFSAFLALTLTPALCAT 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 58/146 (39%), Gaps = 7/146 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L +   +    L  +  ++     +
Sbjct: 865  QAPLLMALSMLVVFLVLAALYESWSIPLSVMLVVPLGLLGAVIAVLLREMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L        +    +    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAK---QLREQGEGLIESAMIAARLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAA 809
             +  G       +    +  GI+ A 
Sbjct: 982  VIASGASAETQRAIGTGVLGGIISAT 1007


>gi|320102259|ref|YP_004177850.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Isosphaera pallida ATCC 43644]
 gi|319749541|gb|ADV61301.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Isosphaera pallida ATCC 43644]
          Length = 1095

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 78/706 (11%), Positives = 178/706 (25%), Gaps = 50/706 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G +      L +  ++++P   P                      
Sbjct: 8   RPVFANVLAILTIIFGWVA-----LQRLPIEQYPEITPPTVTVT-------------TIY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +   E +   S          +T++F      +     V  
Sbjct: 50  PGASAQVVNDTVAVPIEQQVNGVERMLYMSAVCAADGSYNLTVTFEIGTDLDVAQVLVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  + ++  ++   +    I +      +     +  +     +  D++   
Sbjct: 110 RVAAAEPLLPEEVRRQGVLVKKQSVNIIQVVALFSPERTFDGLYLTNYAKLRVRDELSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L+    + A++       N        G        
Sbjct: 170 YGVGDVRVFGGSDYSMRVWLDPDKLKARRISAAEVIAAIRGQNLQVAAGQVGQPPNPSDA 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V     +                 +    +   E G R  +      +       
Sbjct: 230 AFQFTVNTLGRL-------------ETPEQFEQIVVKSEPGNRLVYLKDVARVELGGQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +              L        +  +          
Sbjct: 277 DQFALKNGNPAASCAIFQLPGANALEVARQVRATMKRLEKDFPEGLVYEITFDTTLFVEE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LVL+V+ + +   +  L+   ++ + +I   A ++ LG T+ L ++
Sbjct: 337 SIAEVYKTLFEAGVLVLLVILVFLQDWRALLIPATTVPVTIIGAFAAMAALGFTINLLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIAT 474
            G+VL IG+ VD  I++ E       +      +           I       +   I  
Sbjct: 397 FGLVLAIGIVVDDAIVIVENAAHHIEQGMPPREATIQAMDEVTGPIIGITLVLMAVFIPA 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRF 531
             L    G   R FA+T+  + L+S   A+S+  A           ++     +      
Sbjct: 457 AFLAGITGQLYRQFALTIAATALLSAINALSLKPAQSAAWLKPAPPRRWLLFRVFNAVYN 516

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            +      I     R   + + +   + +        +             V   +  D 
Sbjct: 517 RIEAVYSWIIARLVRATPLVLILFALLAAATFYGYQQIPRSFLPNEDQGYLVSIIQLPDA 576

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + +    E ++     F    G KN      +   D  A                     
Sbjct: 577 ASLDRTREVVEKATTIFLETPGVKNAYGIGGFSFIDFSAAPNAATFFVIFDPW---KQRG 633

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
            + +     I   L  +    +  + + +     IR      LGA+
Sbjct: 634 DDPQKSLGAIVGTLRSRFAQEMQEAFVLIFPPPAIR-----GLGAV 674



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/180 (11%), Positives = 66/180 (36%), Gaps = 8/180 (4%)

Query: 653  NTEIVGPKISRELIRK-GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              E  G     +++    I+  +++ + + + +  +++ W      I T+ L +      
Sbjct: 853  GYEWTGISYQEKIVGSEAILVFVMAVLMVYLVLAAQYESWILPWAVILTVPLALLGAALA 912

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              + G++ N+     ++ +I  +  + +++ +  R                 ++      
Sbjct: 913  TVIRGMDINIYTQIGIVLIIALASKNAILIVEFAR---AKRQAGTPIHQAAVEAARLRFR 969

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + TS+A  + V P+ +    G +   +    +  G++ +   ++F+     +     R
Sbjct: 970  PIIMTSLAFIMGVFPLVIAEGAGAAGRRALGTAVFGGMIASTVLAVFVIPSFYVAAESLR 1029



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/129 (20%), Positives = 51/129 (39%), Gaps = 11/129 (8%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       A  G   NL  +  ++  IG  V+D +V+     +N 
Sbjct: 362 DWRALLIPATTVPVTIIGAFAAMAALGFTINLLTLFGLVLAIGIVVDDAIVIV----ENA 417

Query: 749 KLY-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
             +    +  R+   ++++E  G  +  ++      +P A      G +   FA+ +A  
Sbjct: 418 AHHIEQGMPPREATIQAMDEVTGPIIGITLVLMAVFIPAAFLAGITGQLYRQFALTIA-- 475

Query: 805 IVVAASSSI 813
              A  S+I
Sbjct: 476 -ATALLSAI 483


>gi|207091662|ref|ZP_03239449.1| preprotein translocase subunit SecD [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 525

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 157/544 (28%), Positives = 274/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSNLEGISFELLDEDEAKKLDALL----- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L +       +       S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 106 -----LELQGHSQFEIKKEAGFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKDLISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM + Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMALYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIIGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMALYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+ + +  +G   I  FA+    GI+ +  ++I
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAI 495


>gi|270307705|ref|YP_003329763.1| protein-export membrane protein, preprotein translocase SecF
           subunit [Dehalococcoides sp. VS]
 gi|270153597|gb|ACZ61435.1| protein-export membrane protein, preprotein translocase SecF
           subunit [Dehalococcoides sp. VS]
          Length = 302

 Score =  170 bits (430), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 17/290 (5%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R   + IS L  +  +  L   GL  GIDF  G  L V  ++ + +  +   L SL   
Sbjct: 7   HRPLFIFISALIILAGLASLLIFGLKPGIDFSSGSILTVKFDQTISIDELTQELRSLGHN 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           +   Q             Y    +         ++  + E     T +  E V P I+++
Sbjct: 67  EAIVQITGDGD-------YLIRTTELDVSQKVSLETSLEETFGNLTERGFENVDPLIAKQ 119

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGFFAL----FG 715
             +  ++ V  + + +L+Y+   F+     +++   A+  L  D    LG FAL    FG
Sbjct: 120 TTQMALIAVGAALVGILLYVTWAFRRMPKPFHYGTCAVIALFHDALVVLGIFALLAGIFG 179

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E NL  V  ++ +IGYS+N+ VVV+DR+R+N        SF  ++++SI ET+ RS+ +
Sbjct: 180 WEINLMFVIGIMAVIGYSINNTVVVFDRIRENQLKGIH-PSFEVIVNQSIMETIVRSINS 238

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           S    I+V+ + ++ G+ I + +I M  G++     S+F+A  +L+   +
Sbjct: 239 SFTVIITVVALMLFLGASIQNLSIVMLIGLIAGTYDSLFVAPSLLVTWEN 288


>gi|152971497|ref|YP_001336606.1| integral transmembrane protein; acridine resistance [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150956346|gb|ABR78376.1| integral transmembrane protein; acridine resistance [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
          Length = 1050

 Score =  170 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 57/505 (11%), Positives = 135/505 (26%), Gaps = 32/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +    ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPKGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPQESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 FGGGAVRGFAITMGLSILISMFTAI 504
             G   + +        + ++ +AI
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAI 485



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     +   +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRRKPV 1044



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 89/266 (33%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+      ++ +   P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMAEL-ATRFPEDMQWAAPYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                   + +L+ I     W  ++  +  + + +  T     L G   N  ++  ++  
Sbjct: 345 QTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487


>gi|288933999|ref|YP_003438058.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
 gi|288888728|gb|ADC57046.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Klebsiella variicola At-22]
          Length = 1050

 Score =  170 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 149/550 (27%), Gaps = 35/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPNGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPQESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMKWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++    K      L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAALLLKPHGAKKDLPTRLIDRLFGWI 520

Query: 537 CIAIQFMRAR 546
                    R
Sbjct: 521 FRPFNRFFLR 530



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     +   +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRRKPV 1044



 Score = 45.8 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 89/266 (33%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+      ++ +   P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMAEL-ATRFPEDMKWAAPYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                   + +L+ I     W  ++  +  + + +  T     L G   N  ++  ++  
Sbjct: 345 QTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487


>gi|300772308|ref|ZP_07082178.1| AcrB/AcrD/AcrF family protein [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300760611|gb|EFK57437.1| AcrB/AcrD/AcrF family protein [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 1025

 Score =  170 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 75/608 (12%), Positives = 166/608 (27%), Gaps = 44/608 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++   I   G +           +  +PS  P                     
Sbjct: 9   KRPVLTIVVNVTIILFGYI-----GYSFLGVREYPSIDPAIV---------SVRTNYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +        S     + IT+ F   +  E  A+     +  
Sbjct: 55  NPDIIESQITEPLEKSINSIDGIRNITSSSSLGSSNITVEFELEKNLEEAANDTRDKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +V+  + +   +++   I       +E S        +++       
Sbjct: 115 ALRSLPQDIDAPPVVSKADADSEPIIT-LTIQSDTRDKLELSDYAENVIGERLQTIPGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP++L     T   +       N               +     
Sbjct: 174 SVQIWGQQRYAMRLWFDPAKLAAYSVTVDDVRAALSAQNVELPSGKIVGANTELTVKTVG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + E                      DI       R                +    
Sbjct: 234 NLSTEKEFE--------------------DIIIKSDSDRIVKFSDVGYAKLQAENLETKM 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V     +       +   +          L   L+          V   N      S   
Sbjct: 274 VSNGKQLVGVAIIPQPGTNYIDIANDFYKLLDQLKEDIPEDITLNVAADNTTFIKKSVIE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV ++++         L     I +++I T  ++ + G ++ + ++  IV
Sbjct: 334 VAETLLISIALVTLIIYFFFRDWGIALRPLLDIPVSLIATFFIMYIFGFSINVLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFFF 480
           L  GL VD  I+V E I ++     S   +   G    +   I  S   A +   V+F  
Sbjct: 394 LATGLVVDDGIVVTENIFKKVEAGMSPIEAALKGSKEIFFAVISISVTLAAVFLPVIFLQ 453

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G   R F + +  ++L+S F ++++   +  ++I+    +       +  F      
Sbjct: 454 GFVGRLFREFGVVIASAVLVSAFVSLTLTPMLNAYLIKGTGHEKSKFYIWTEPFFEKMNS 513

Query: 539 AI-----QFMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                   FM+ ++     + + F +  I            D +  + + V         
Sbjct: 514 GYAKILEHFMKIKWISFPILILCFVVIGIIFGSIKKETAPYDDRSNVNINVTGPEGATFE 573

Query: 593 VVRSNLES 600
            +   ++ 
Sbjct: 574 YMDRYMQE 581



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 43/280 (15%), Positives = 93/280 (33%), Gaps = 16/280 (5%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ--- 609
           S          +        +   G +         +  S     ++   +G    Q   
Sbjct: 209 SAQNVELPSGKIVGANTELTVKTVGNLSTEKEFEDIIIKSDSDRIVKFSDVGYAKLQAEN 268

Query: 610 ---NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                      LV +   P        +     K + ++        T  V    +  + 
Sbjct: 269 LETKMVSNGKQLVGVAIIPQPGTNYIDIANDFYKLLDQLKEDIPEDITLNVAADNTTFIK 328

Query: 667 RKGIVG---VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           +  I     ++IS   + + I+  F+ W  AL  +  + + +  T     +FG   N+  
Sbjct: 329 KSVIEVAETLLISIALVTLIIYFFFRDWGIALRPLLDIPVSLIATFFIMYIFGFSINVLT 388

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV---YTSMAA 779
           + A++   G  V+D +VV + +    K     +S  +   K   E     +    T  A 
Sbjct: 389 LLAIVLATGLVVDDGIVVTENI---FKKVEAGMSPIEAALKGSKEIFFAVISISVTLAAV 445

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           F+ V+ +  + G +   F + +A  ++V+A  S+ +   +
Sbjct: 446 FLPVIFLQGFVGRLFREFGVVIASAVLVSAFVSLTLTPML 485



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 12/146 (8%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMR 745
             +      I T+ + +   L    LFG  +N+ +    + LIG    + +++ +   ++R
Sbjct: 876  SFLDPFIIILTVPMAVAGALISLWLFGQTWNIFSQIGTIMLIGLVTKNGILIVEFANQLR 935

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            +        +   + I  S    L   + TS+A  +  LP+A+      +      + + 
Sbjct: 936  EE------GMPKFEAIMHSAESRLRPILMTSLAIALGALPIALSLGAAATSRIGMGVVIV 989

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRA 828
             G + +   ++F+   I       + 
Sbjct: 990  GGTIFSLILTLFVIPAIYYMWSRAKK 1015


>gi|92118998|ref|YP_578727.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrobacter hamburgensis X14]
 gi|91801892|gb|ABE64267.1| Hydrophobe/amphiphile efflux-1 HAE1 [Nitrobacter hamburgensis X14]
          Length = 1056

 Score =  170 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 84/688 (12%), Positives = 184/688 (26%), Gaps = 49/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC IG +       P   + ++P   P               + +    
Sbjct: 8   RPVFAWVIALFICLIGAISI-----PLLAVAQYPIIAPP-------------SISISTAY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  L       +   L    GI  F        Q +IT  F      +  +  V  
Sbjct: 50  PGASPQNLYNSVTRLIEEQLNGASGILSFESTSDSLGQVEITAYFVPGTQLDMASVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ + ++L     K  ++       ++ +            +     I+R  I +I   
Sbjct: 110 RIKRIEARLPAVVLKEGILVEEASSDTLQIVTLRSTDNSLDEVGLGDFIMRNIIGEIRRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +L     T+  ++      N        G    R   
Sbjct: 170 PGVGRATLF-STERSLRVWIDPEKLVGYDLTSDDVTKAIAAQNAQVASGSIGAPPSRAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  + +++                +    +                 +       
Sbjct: 229 KTAALVLVRGQLT-------------TPEEFGSILLRANRDGSTVRLRDVARVEVGGMDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 RFTTRLNGKPTAGLSVMLAPGSNALATASAVRAKMQELSKFFPATIAYDIPYDITPVVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ ++    + + ++ T ++L + G ++ + ++
Sbjct: 336 SIEKVVHTLIEAVVLVFLVMFLFLQNIRYTIIPTIVVPVALLGTCSVLLVAGYSINMLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +     S+  S I    +  +   V 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMTEEGLPPKEAARKAMSQITSAIIGITLVLMAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIR-----YKKMKSIDINPL 528
           + FF G      R F++T+  +I  S   A+S+  A+   +++     +   +       
Sbjct: 456 MAFFPGSVGIIYRQFSVTVVAAIAFSALMALSLTPALCATLLKPVEAGHGHARKGVFGWF 515

Query: 529 SRFFLIPDCIAIQFMRA---RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           +R         +  +     R   + +     +  +   F       +       +    
Sbjct: 516 NRTLEGVRGRYVSTVGWSLGRTGRLMLIYAVLVGVLVWAFGRLPAGFVPVDDQGFITTDV 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             P D S  R+      +     +    E    +      G  +   +    +K      
Sbjct: 576 QTPSDSSHGRTEAAVEAVEKYLAKRPGIEDVTFLTGFAYSGQGMNTAQAFITLKDWSERP 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673
              S           +S  L    I  +
Sbjct: 636 EKDSAANIVADANRDLSASLRDAKITAL 663



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 89/246 (36%), Gaps = 6/246 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V            + +        L  +     +++A    +    ++++
Sbjct: 255 RDGSTVRLRDVARVEVGGMDYRFTTRLNGKPTAGLSVMLAPGSNALATASAVRAKMQELS 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P +   +       +    I K +  +I + + + + +++  +   + +     + +
Sbjct: 315 KFFPATIAYDIPYDITPVVEASIEKVVHTLIEAVVLVFLVMFLFLQNIRYTIIPTIVVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     + G   N+  +  ++  IG  V+D +VV + +     +    +  ++   
Sbjct: 375 ALLGTCSVLLVAGYSINMLTMFGMVLAIGILVDDAIVVVENV--ERIMTEEGLPPKEAAR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++++     +  ++      +PMA + GSV      F++ +   I  +A  ++ +   +
Sbjct: 433 KAMSQITSAIIGITLVLMAVFVPMAFFPGSVGIIYRQFSVTVVAAIAFSALMALSLTPAL 492

Query: 820 LLFIYD 825
              +  
Sbjct: 493 CATLLK 498



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 652  QNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               E  G  +  +L   +    + +SA+ + + +   ++ W   L  + T+ L I   + 
Sbjct: 851  FGYEWTGQSLQEKLSGSQAPFLLALSALVVFLCLAALYESWTIPLAVLLTVPLGICGAVL 910

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 G+  ++     ++T+IG +  D +++ +  +    L       R+   ++     
Sbjct: 911  AATTRGLANDVYFTVGLVTIIGLAAKDAILIIEFAKD---LRAQGKPLREATIEACALRF 967

Query: 770  GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
               + T +A    VLPM V    GG+   +    +  G++ 
Sbjct: 968  RPILMTGLAFVSGVLPMVVAQGAGGASQQALGTSVMGGMIA 1008


>gi|119386160|ref|YP_917215.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Paracoccus
           denitrificans PD1222]
 gi|119376755|gb|ABL71519.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Paracoccus denitrificans PD1222]
          Length = 1034

 Score =  170 bits (429), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 74/623 (11%), Positives = 181/623 (29%), Gaps = 39/623 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +    G+       L    + ++P   P                      
Sbjct: 8   RPVFAWVLAIITMLAGVY-----GLSSLPIAQYPDIAPTTVR---------ISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    ++  + L        +  Q  + I L+F DS   +    +V   LQ V
Sbjct: 54  PDIVENSVTSIIEDGMTGLDGLIYMTSTSSQGSSSIQLTFDDSVDPDIAQVQVQNKLQLV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +   +  +      +++           ++E    + +   + +  +     
Sbjct: 114 TSQLPESVQSKGVSVSRSTSSILLVGALTSTDGSYSSLELGDLVAQVIENPVKRTAGVGS 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP R+ Q   T + +       N +      G +           
Sbjct: 174 INSFGSG-YAMRIWLDPDRMLQYQVTPSDVVSAVSEQNTNVTLGSLGSQPTVKGQQLNVA 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  + +++ +              +    +   +      F     +I            
Sbjct: 233 LSAQSQLTSVR-------------EFERILLRTDSDGATIFLGDVADIEIGQEDYGSSSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +     +   T E    +   L++        +           S +  
Sbjct: 280 YNGMPAAGFGVNLATGANAVDTAEAVREVLDGLQSSLPAGVQIVYPYDTSPFVEESINQV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+ + +   +  L+   +I + ++ T  +LS  G ++   ++  +VL
Sbjct: 340 YHTLIEAVVLVFLVILVFLQSWRATLIPTLAIPVVLLGTFGVLSFAGMSINTLTMFAMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLF 478
            IGL VD  I+V E +      ++     + +       S    I        +    + 
Sbjct: 400 AIGLLVDDAIVVVENVERVMEEESIGPVEATEKSMDEISSALVGIVLVLSAVFLPMAFMS 459

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-------KSIDINPLSRF 531
              G   R F++T+  ++++S+  A+ +  AM   ++R +         +  + N     
Sbjct: 460 GSTGVIYRQFSVTIITAMVLSLGVALILTPAMCATLLRPRGHGDGIAPARWFNRNLDRAT 519

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +     R   + V +    +   +      G     + +G + + V        
Sbjct: 520 NGYAGAVGAFVRRPFRFLVVLLAFGAGAYMLYQKLPGSFLPSEDQGVLMVMVETPEGSTA 579

Query: 592 SVVRSNLESLQIGDISFQNFDGE 614
              R+ +E ++   +  +    E
Sbjct: 580 ERTRALVEEVEQYVLGTEKDTAE 602



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 5/142 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +  T G  +  G+  N   + A++  IG  V+D +VV + +    
Sbjct: 360 SWRATLIPTLAIPVVLLGTFGVLSFAGMSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +   SI   +  +KS++E     V   +      LPMA   GS       F++ +   +
Sbjct: 418 VMEEESIGPVEATEKSMDEISSALVGIVLVLSAVFLPMAFMSGSTGVIYRQFSVTIITAM 477

Query: 806 VVAASSSIFIAAPILLFIYDWR 827
           V++   ++ +   +   +   R
Sbjct: 478 VLSLGVALILTPAMCATLLRPR 499



 Score = 50.8 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 85/264 (32%), Gaps = 10/264 (3%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                 +     R     +V     + Q  D   Q+                     +   
Sbjct: 773  MQPDDIEKWYVRNTAGDMVPFTAFTAQDWDQQAQSLARYGGTRSLEVTGAPAQGVSSGTA 832

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
              V +++   +          +  +      +  ++  + + +  L    +   W   L 
Sbjct: 833  MEVMEELVAGMDGGYGTAWTGLSYQERLSGSQAPMLFALSALVVFLALAALYESWSVPLS 892

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             + T+ + I   +    +F    ++     +LT IG +  + +++ +      +L+    
Sbjct: 893  VMMTVPIGIVGAMAAALVFDQSNDVYFKVGLLTTIGLAARNAILIVEFA---QQLHGHGK 949

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLP---MAVWGGSVIGSFAIPMAFGIVVAASSS 812
               +   ++    L   + T++A  + VLP    +  G +   S  I +  GI  +A   
Sbjct: 950  PLLEAAVEASRMRLRPILMTTLAFMLGVLPLALASGAGAAAQQSIGIGVLGGITASAVIG 1009

Query: 813  IFIAA----PILLFIYDWRAKNAR 832
            IF+ A     +L  +  +  K A+
Sbjct: 1010 IFLVAVFYVAVLRAVQHFTNKRAK 1033


>gi|68500018|gb|AAY97961.1| MDE transporter protein [Plasmid pMCBF1]
 gi|133711778|gb|ABO36598.1| MDE transporter protein [uncultured bacterium pMCBF6]
          Length = 1055

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/575 (12%), Positives = 163/575 (28%), Gaps = 40/575 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +GL+       P   +  +P  +P               + +    
Sbjct: 10  RPIFAAVLSIIIFVVGLIAI-----PLLPVSEYPEVVPP-------------SVQVRATY 51

Query: 63  DDFV-NGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                       +  L + +   E +         + +   T++F      ++   KV  
Sbjct: 52  PGANPREIADTVAAPLEASITGVENMLYMKSVAGSDGVLVLTVTFRPGTDPDDAQVKVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    ++  +VT  +     ++ Q         A+      +    D++   
Sbjct: 112 RVAQAEPRLPEAVRQQGVVTVKQSHNETLVVQLRSPGDRYDALYLRNYAVLHVRDELARI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP ++  L  T   +       N        G        
Sbjct: 172 QGVGDAKIYGSGDYAMRLWLDPDKIAALGMTAGDVVEAVREQNVQVSAGQLGAPPNPSGS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I       +         +    +  
Sbjct: 232 DFLLSINAQGRLVTEE-------------EFGDVIVKTGSQGQVTRLRDVARVEMDASSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L                +     +        L           VE  +      
Sbjct: 279 SLMSLLNNKPAVAISVLEAPGANAIEISDQVRAKMDELAKRFPEGVEWSVEYDSTVFVRQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV++V+ + +   +  ++   ++ ++V+ T A+L +LG ++   ++
Sbjct: 339 SIKAVVNTLLEAIGLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAVLLMLGFSINTLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIAT 474
            G+VL IG+ VD  I+V E +     +  +   +           I   +    +  +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIAEGLAPLAAAHQAMREVSGPIVAISLVLCSVFVPM 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFL 533
             L    G   + FA+T+ +S +IS   ++++  A+    +  +     +    L R   
Sbjct: 459 AFLSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAARLLRPHGAAPDLPTRVLDRSLG 518

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                  +F      G G S+   +     +F   
Sbjct: 519 WIFRPFNRFFLRSADGYGNSVSRILGRRGAVFLVY 553



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   +    L G + N+     ++ LIG +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMSLLSAMTGVWLAGGDSNIFVQIGLIVLIGLASKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L     S  D   ++    L   + TS+A    V+P+ V    G  +     + +  G+
Sbjct: 958  -LERKGHSILDAALEASRLRLRPIIMTSIAFIAGVVPLMVGSGAGAEIRQVMGMTVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +     +  R
Sbjct: 1017 LGVTLFGLFLTPVFYVALRRLATRKPR 1043



 Score = 44.7 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 10/126 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     + G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSVVGTFAVLLMLGFSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                ++      +++ E  G  V  S+      +PMA   G        FA+     I 
Sbjct: 425 E---GLAPLAAAHQAMREVSGPIVAISLVLCSVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASSS 812
           ++   S
Sbjct: 478 ISTVIS 483


>gi|163848570|ref|YP_001636614.1| protein-export membrane protein SecF [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526505|ref|YP_002570976.1| protein-export membrane protein SecF [Chloroflexus sp. Y-400-fl]
 gi|163669859|gb|ABY36225.1| protein-export membrane protein SecF [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450384|gb|ACM54650.1| protein-export membrane protein SecF [Chloroflexus sp. Y-400-fl]
          Length = 335

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/314 (23%), Positives = 142/314 (45%), Gaps = 27/314 (8%)

Query: 544 RARFWGVGISILFSICSICLLFTHGL----------NYGIDFKGGIQLGVLANRPVD--- 590
           R R+W    S+L  +  + +LF H L             IDF GG    +          
Sbjct: 6   RRRYWWFAFSLLIILPGLYMLFLHPLLTTGRPGIGLRPSIDFAGGALWELRFPDVTPETL 65

Query: 591 -----LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                               +S    DG+      ++ +P         ++ V K +T+ 
Sbjct: 66  STDRIAQAFAEAGFESAQVQLSPTVIDGQPVAAALVRTRPLSESDPNAEIDAVTKALTDA 125

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTL 700
               + +  E VGP +S E  R  I+ V+ +++ +L+Y+   F+     + + + A+  +
Sbjct: 126 FGTVSRERLESVGPTVSAESTRSAIIAVLGASLIILLYLTWAFRKAPHPFRYGVCALIAM 185

Query: 701 ILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + D+   LG  A+ G    +E +   + A+LT + +SV+D +VV+DR+R+N+     + +
Sbjct: 186 LHDVLVVLGIAAILGATIGLEVDALFLTALLTTLSFSVHDTIVVFDRIRENLINRHPAET 245

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           F D+++ S+ +TL RS+   +  F ++  + ++GG  I +F + +  G+V    SSIF A
Sbjct: 246 FDDIVNHSLVQTLPRSINAQLTTFFTLTALLLFGGDTIRNFVLILLIGLVSGTYSSIFNA 305

Query: 817 APILLFIYDWRAKN 830
           A +L+       +N
Sbjct: 306 AQLLVVWEHREWRN 319


>gi|218890251|ref|YP_002439115.1| putative Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa LESB58]
 gi|218770474|emb|CAW26239.1| probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa LESB58]
          Length = 1053

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/523 (12%), Positives = 151/523 (28%), Gaps = 36/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              + ++L  ++   G++        Q  L  +P+  P               +      
Sbjct: 10  RPIFAIVLSVLMMIGGIVS-----FFQLPLSEYPAVTPPT-----------VQVTTAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFL 119
              D +   +    ++  + ++               I T++F      +    +V   +
Sbjct: 54  ANPDVIAQTVATPLEQAITGVEGMLYMSSQSATDGRMILTITFDQHIDPDMAQIQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V S+L  + ++  +VT       +++      +     +  S     Q  D++     
Sbjct: 114 SRVLSRLPDEVQRQGVVTQKTSPDILMVVHLLSPEQRYDPLYISNYAYLQVRDELLRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               +        +    DP  +     T  ++       N        G      +   
Sbjct: 174 ISDVVVWGAGEYSMRLWLDPDLIAARGLTAGEVIAAVREQNVQVAAGAVGQAP-DSTAAF 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V     +S                +    I       +         I         
Sbjct: 233 QVTVNTLGRLSDEE-------------QFGDIIVRTGADGQVTRLRDVARIEMGGDAYAL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +   T E      A L           +          S 
Sbjct: 280 RSLLDGEPAVALQIIQSPGANALDTAEAVRATVARLEGNFPAGLSARIAYDPTVFVRASL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  L+   ++ ++++ T A++ L+G +L   S+ G
Sbjct: 340 QTVATTLLEAILLVVVVVVLFLRSWRASLIPLMAVPVSLVGTFAVMHLMGFSLNTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV--- 476
           +VL IG+ VD  I+V E +       +    +           I           +    
Sbjct: 400 LVLSIGIVVDDAIVVVENVERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAF 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           L    G   R FA+T+ +S ++S   ++++  A+   ++R + 
Sbjct: 460 LSGLQGEFYRQFALTIAISTILSALNSLTLSPALAGLLLRPRP 502



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/231 (10%), Positives = 71/231 (30%), Gaps = 9/231 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      D            +         S     ++E +  ++          +   
Sbjct: 807  TVTPSSGPDRVIHYNGYPSADISGGALPGVSSGQAVALMERLAGEVLPEGMTFEWTDLTY 866

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                     +    +  +   +A LI       W   L  +  + + +   +    L G 
Sbjct: 867  QQKLAGNSAL---FIFPLCVLLAYLILAAQYNSWLLPLAVLLIVPMCLLSAIAGVWLVGG 923

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + N+     ++ L+G +  + +++ +  R    L        + + ++    L   + TS
Sbjct: 924  DNNVFVQIGLVVLVGLAAKNAILIVEFAR---TLEAEGARALEAVVEACRLRLRPILMTS 980

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +A    V+P+ +    G  +  +  + +  G++      +F+     + + 
Sbjct: 981  LAFIAGVVPLVMASGAGAEMRQAMGVAVFAGMLGVTLFGLFLTPVFYVLVR 1031



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  +L  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + +   
Sbjct: 362 RSWRASLIPLMAVPVSLVGTFAVMHLMGFSLNTLSLFGLVLSIGIVVDDAIVVVENV--- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +             ++++E  G  +  TS   A FI    ++   G     FA+     
Sbjct: 419 ERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAFLSGLQGEFYRQFALT--IA 476

Query: 805 I--VVAASSSIFIAAPILLFIYDWR 827
           I  +++A +S+ ++  +   +   R
Sbjct: 477 ISTILSALNSLTLSPALAGLLLRPR 501


>gi|206578405|ref|YP_002237026.1| RND family multidrug efflux permease protein OqxB [Klebsiella
           pneumoniae 342]
 gi|206567463|gb|ACI09239.1| RND family multidrug efflux permease protein OqxB [Klebsiella
           pneumoniae 342]
          Length = 1050

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 149/550 (27%), Gaps = 35/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPNGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPQESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++    K      L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAALLLKPHGAKKDLPTRLIDRLFGWI 520

Query: 537 CIAIQFMRAR 546
                    R
Sbjct: 521 FRPFNRFFLR 530



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 56/149 (37%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L +      +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LESQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     +   +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRRKPV 1044



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 89/266 (33%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+      ++ +   P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMAEL-ATRFPEDMQWAAPYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                   + +L+ I     W  ++  +  + + +  T     L G   N  ++  ++  
Sbjct: 345 QTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487


>gi|224823921|ref|ZP_03697030.1| acriflavin resistance protein [Lutiella nitroferrum 2002]
 gi|224604376|gb|EEG10550.1| acriflavin resistance protein [Lutiella nitroferrum 2002]
          Length = 1040

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/522 (11%), Positives = 149/522 (28%), Gaps = 39/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  +  +L   +  +GL  A      +  ++ FP       +                 
Sbjct: 9   RNPYFATVLMLALLVLGLFAAW-----RLPVEEFPDIRFPVAV---------VSTTYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E  + +           +  + I + F  S         V   +  
Sbjct: 55  SPEVVESEVSRPLEEAINTISGIKHIRSYSFEGSSTIVVEFELSTDPNVAVQDVRDRVGS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +   +     +      +  ++    +  +V       +  +      ++       
Sbjct: 115 VQGRFRREISTPTVSQFNPNDQPLLSITLSSPEVSPRT--LTTWVDNVLKKRLQTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         +L  + DP RL     +  +++      N        G      S     
Sbjct: 173 EAKLVGGAKRELRIDLDPYRLEAAGLSLPEVAAVLRQANQDYPAGDVGTSSRELSVRVAG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                     +                 +    A      
Sbjct: 233 KLKSPADFAA--------------------LPLAWKNGNPVRLADVAEVSDAEAEPSSVS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++                +     +    + A  R    P  +             S + 
Sbjct: 273 LIDGKPAVGLEIRAARGANVVEVADGVKRVIAAERGQMPPGTVVTYTYDKSQDVKNSLAD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A L ++++F+ +   +  ++   ++ +++I TL  +  LG TL L ++  + 
Sbjct: 333 VRATLIEGAALTVLIVFLFLGSWRSTVITGLTLPVSLIGTLFAVQALGFTLNLMTLMALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +  F +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHANMGKGHFQAALQGTEEIGLAVLATTLTVVAVFLPVGFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              G     F +T+ +++LISM  + ++   +          
Sbjct: 453 GIIGKFFHEFGLTVTVAVLISMLVSFTLDPMLSSLWHDPHHH 494



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 8/211 (3%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +R             V  ++  +  ++ P + +  T      +   L       +  +A+
Sbjct: 284 IRAARGANVVEVADGVKRVIAAERGQMPPGTVVTYTYDKSQDVKNSLADVRATLIEGAAL 343

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +LI       W   +    TL + +  TL      G   NL  + A+   IG  ++D +
Sbjct: 344 TVLIVFLFLGSWRSTVITGLTLPVSLIGTLFAVQALGFTLNLMTLMALSLSIGLLIDDAI 403

Query: 739 VVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           VV    R+N+  +            +   E     + T++      LP+   GG +    
Sbjct: 404 VV----RENIVRHANMGKGHFQAALQGTEEIGLAVLATTLTVVAVFLPVGFMGGIIGKFF 459

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F + +   ++++   S  +   +    +D
Sbjct: 460 HEFGLTVTVAVLISMLVSFTLDPMLSSLWHD 490



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 69/169 (40%), Gaps = 7/169 (4%)

Query: 669  GIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +  I + +I +     +   L  +  L L           FG   N+ +V  ++
Sbjct: 862  AVQALAMGVIFIYMILVAQFRSFSLPLSIMVALPLAFVGVFLGLLAFGSTLNMFSVIGIV 921

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G +  + +++ D + ++ +     ++  D I ++    L   + TS+A    +LP+A
Sbjct: 922  MLMGLAAKNGILLVDFINQSRRE---GMAREDAIVEAGRVRLRPIMMTSLAMICGMLPLA 978

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +    G       A  +  G+V +   ++ +   +  ++   R +  R+
Sbjct: 979  LGAGEGSESRAPMAHAIIGGMVTSTLLTLLVLPVVYTYLDGLRERVRRL 1027


>gi|21231812|ref|NP_637729.1| preprotein translocase subunit SecF [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66768062|ref|YP_242824.1| preprotein translocase subunit SecF [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|325919628|ref|ZP_08181637.1| protein translocase subunit secF [Xanthomonas gardneri ATCC 19865]
 gi|21113526|gb|AAM41653.1| protein-export membrane protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573394|gb|AAY48804.1| protein-export membrane protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|325549876|gb|EGD20721.1| protein translocase subunit secF [Xanthomonas gardneri ATCC 19865]
          Length = 322

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/282 (31%), Positives = 153/282 (54%), Gaps = 5/282 (1%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    LIP+   I FMR R   + + ++ +I SI ++   G NY ++F GG  +    
Sbjct: 1   MKIFPLHLIPNDTKIDFMRLRKPVLILMLVLAIASIGIIVGKGFNYALEFTGGTLVQTSF 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD---SVAQTRVLEMVKKKI 642
            + VD+  VR  L      +   QN  G    ++RLQ +        A T V E V+K +
Sbjct: 61  QKTVDVDQVREQLAKAGFENAQVQNARGGNEVMIRLQAREQHNNRDDAATTVAEEVRKAV 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
           +     +T+Q  E VGP++ ++L   G+   +   +  LIYI  RF+W FA+ A  T + 
Sbjct: 121 STEQNPATVQPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALF 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+ F +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   ++++
Sbjct: 181 DLLVTVAFVSLTGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRAL--RVEPLEVLN 238

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           +SIN+TL R+V T++  F+S L + ++GG  +   A     G
Sbjct: 239 RSINQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIG 280


>gi|310815786|ref|YP_003963750.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Ketogulonicigenium vulgare Y25]
 gi|308754521|gb|ADO42450.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Ketogulonicigenium vulgare Y25]
          Length = 1036

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/601 (12%), Positives = 173/601 (28%), Gaps = 32/601 (5%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +  +L      +G +      + +  + ++P   P                       +
Sbjct: 10  VFAWVLAIATMLLGAI-----GMSRLSIAQYPDIAPTTVQ---------VMATYTGASAE 55

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V   +    ++  + +        S       +TL+F +S   +    +V   LQ V++
Sbjct: 56  IVADSVTTVIEDGMTGIDGLVYMTSSSSTGSATVTLTFNESVDPDIAQVQVQNRLQMVSA 115

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +L    ++N +         +++     +      +E      +   D +  +       
Sbjct: 116 QLPSVVQQNGVQVYRSSSSILLVGALTSEDGSYSVVELGDLTSQVLEDPVRRTSGVGSIQ 175

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                   +    DP ++ Q   TTA +       N +      G R + D       + 
Sbjct: 176 SFAS-SYAMRIWLDPMKMVQYQVTTADVLSAVSDQNTNVTVGTLGSRPVVDGQRLTIPLS 234

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            + ++S                +    +          F      I           +  
Sbjct: 235 AQSQLS-------------TVSEFENILMRVNEDGATVFLGDVARIEIGQESYAFDSLYN 281

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
               +    +     +   T E      A L +        +           S      
Sbjct: 282 GKPASGFAVNLATGANAVDTAEAVRHTLATLESTLPDGVFLVYPYDTSPFVEKSIEKVYH 341

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           T      LV +V+ + +   +  ++   +I + ++ T+ +L++LG ++   ++  +VL I
Sbjct: 342 TLIEAIILVFVVILVFLQSWRATIIPIVAIPVVLLGTMGVLAVLGYSINTLTMFALVLAI 401

Query: 425 GLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLFFF 480
           GL VD  I+V E +             + +       S    I        +    +   
Sbjct: 402 GLLVDDAIVVVENVERVMEETGLGPVEATEKSMKEITSALVGIVLVLSAVFLPMAFMSGS 461

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G   R F++T+  ++++S+  AI +  AM   ++R +K       P   F    D    
Sbjct: 462 TGVIYRQFSVTIITAMVLSLGVAIILTPAMCASMLRARKHGESKFPPARWFNRGMDKTTK 521

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
            +       V   I   I  + + +     +       +           +     +   
Sbjct: 522 GYGGVIKLLVRRPIFMIIVLLGISWVALGRFQDLPSSFVPQEDQGVLMAIVETPDGSTME 581

Query: 601 L 601
           +
Sbjct: 582 V 582



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 82/244 (33%), Gaps = 6/244 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +             +          ++V     +      +   +P 
Sbjct: 259 VFLGDVARIEIGQESYAFDSLYNGKPASGFAVNLATGANAVDTAEAVRHTLATLESTLPD 318

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                          + I K    +I + I + + I +    W   +  I  + + +  T
Sbjct: 319 GVFLVYPYDTSPFVEKSIEKVYHTLIEAIILVFVVILVFLQSWRATIIPIVAIPVVLLGT 378

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS--- 764
           +G  A+ G   N   + A++  IG  V+D +VV + +     +  T +   +  +KS   
Sbjct: 379 MGVLAVLGYSINTLTMFALVLAIGLLVDDAIVVVENV--ERVMEETGLGPVEATEKSMKE 436

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           I   L   V    A F+ +  M+   G +   F++ +   +V++   +I +   +   + 
Sbjct: 437 ITSALVGIVLVLSAVFLPMAFMSGSTGVIYRQFSVTIITAMVLSLGVAIILTPAMCASML 496

Query: 825 DWRA 828
             R 
Sbjct: 497 RARK 500



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 65/156 (41%), Gaps = 11/156 (7%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            ++ +  AM++++ +      W      + ++ + I   +     FG   ++     +LT 
Sbjct: 869  MLFALSAMVVFLALAALYGSWSVPFAVMMSVPVGILGAVVAAGWFGQSNDVYFKVGLLTT 928

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG +  + +++ +      +L+    + R+    +    L   + T+ A  + VLP+A+ 
Sbjct: 929  IGLAARNAILIVEFA---QQLHHEGKTLREAAIMAAQMRLRPILMTTFAFMLGVLPLAIA 985

Query: 790  GGSVIGSFAIPMAFGIVVAASSS----IFIAAPILL 821
             G+   +    +  G++   +SS    IF+     +
Sbjct: 986  TGAGAAAQN-SIGIGVLGGMTSSGAIGIFLVPAFYV 1020



 Score = 37.7 bits (85), Expect = 9.1,   Method: Composition-based stats.
 Identities = 51/524 (9%), Positives = 121/524 (23%), Gaps = 50/524 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-- 59
            R   +      +I  +G+                P              +G    ++E  
Sbjct: 532  RRPIF-----MIIVLLGISWVALGRFQDLPSSFVPQED-----------QGVLMAIVETP 575

Query: 60   -VDEDDFVNGFLQMYSD--------ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKEN 110
                 +     L              + +     G       Q    + +   D      
Sbjct: 576  DGSTMEVTRELLDRIQTYLLEEESEAVEAVFGILGFSFSGQSQNGGMLFVKLHDHED--R 633

Query: 111  IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
            +          VN    +  +   +       I  + +           ++Q+     Q 
Sbjct: 634  LGTSAADLANRVNGHFFMTNRTGFVFFLQPPAIQGLGT---SAGFTMQLVDQAQ--NGQE 688

Query: 171  IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
                  +E   +     RI     G+       +L     K +   +  +          
Sbjct: 689  ALAAAAAELRARVQADGRITNVQGGDDPFQSALRLNIDQQKAAAFGLSISEVNAMLSVIF 748

Query: 231  RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                 +D         V + G     +  +   + +            A       +   
Sbjct: 749  SGSEVNDFAMGSGLRPVIVQGEASARSQPDDIDRWYARNSSGEMVPFSAFASRVWDQQAE 808

Query: 291  GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                        ++   +          I      E   +      A +           
Sbjct: 809  TVTRYGGTLAMEISGEAVPGLSSGDAMAIMEELVSE---LDGGYGVAWTGLSYQERQSGD 865

Query: 351  NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                             + A +V + L  +            S+ + ++  +      G 
Sbjct: 866  QATMLFA----------LSAMVVFLALAALYGSWSVPFAVMMSVPVGILGAVVAAGWFGQ 915

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
            +  +    G++  IGLA  + IL+ E  ++ + + +++  +  M        I  +    
Sbjct: 916  SNDVYFKVGLLTTIGLAARNAILIVEFAQQLHHEGKTLREAAIMAAQMRLRPILMTTFAF 975

Query: 471  LIATVVL---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            ++  + L      G  A     I +   +  S    I +V A  
Sbjct: 976  MLGVLPLAIATGAGAAAQNSIGIGVLGGMTSSGAIGIFLVPAFY 1019


>gi|304397448|ref|ZP_07379326.1| acriflavin resistance protein [Pantoea sp. aB]
 gi|304355066|gb|EFM19435.1| acriflavin resistance protein [Pantoea sp. aB]
          Length = 1023

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/620 (11%), Positives = 169/620 (27%), Gaps = 44/620 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATTLLTLAIALAGML-----GFRLLPVAPLPQVDFPVIV---------ISASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +      +I L F   R     A  V   +   
Sbjct: 56  PEIMASSVATPLERSLGRIAGVSEMTSTSSLGSTRIILVFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +     +  +       Q   ++   E    
Sbjct: 116 QSLLPTGMPSRPTYRKVNPSDAPIMI-MTLTSDTYNPGQLYDYASTQLAQKLSQIEGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  +                   
Sbjct: 175 VTVGGSSLPAVRVALNPQALFNQGVSLDAVRTAISNANQRRPQGALDD------------ 222

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N   +T +    +                 +   +  V +  +
Sbjct: 223 --------GQQRWQLRTNDALQTAREYQPLVVHYNNGAAVRLSDVATVEDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +     + +   T++       +L           + +        S    
Sbjct: 275 SRGKPAVLLLIRKTPEANVIDTVDRIRAEMPLLHEVIPAAIDLEIAQDRSPTIRASLHEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQSLIIAVALVILVVFVFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHVEAGMKPLAAALKGVREVGFTVLSMSLSLIAVFLPLLMIGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP------LSRFFL 533
             G     F+IT+ +SILIS+F ++++   M  ++++    +S           ++    
Sbjct: 455 LIGRFFSEFSITLSVSILISLFISVTLTPVMCAYLLKPHAPRSQPRQRGVGRLLMAIQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               + +    AR+  +      ++     +            G +   + A++ +    
Sbjct: 515 YGRSLNVVLNHARWVLLLFFATIALTGWLFVHIPKTFMPEQDTGRLSGFISADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDG 613
           +RS L+       +    D 
Sbjct: 575 MRSKLQDFMEIVGADPAVDS 594



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 92/263 (34%), Gaps = 7/263 (2%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                L T+           + +       V LS V +  +S+Q    +  +       L
Sbjct: 224 QQRWQLRTNDALQTAREYQPLVVHYNNGAAVRLSDVATVEDSVQDVRNAGMSRGKPAVLL 283

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  +    + +     +      + E++P +             R  + +    +II+  
Sbjct: 284 LIRKTPEANVIDTVDRIRAEMPLLHEVIPAAIDLEIAQDRSPTIRASLHEVEQSLIIAVA 343

Query: 679 AMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            +++ +++  +     L     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFVFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
           +VV + +    +     +       K + E     +  S++     LP+ + GG +    
Sbjct: 404 IVVLENI---ARHVEAGMKPLAAALKGVREVGFTVLSMSLSLIAVFLPLLMIGGLIGRFF 460

Query: 796 -SFAIPMAFGIVVAASSSIFIAA 817
             F+I ++  I+++   S+ +  
Sbjct: 461 SEFSITLSVSILISLFISVTLTP 483



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 90/221 (40%), Gaps = 12/221 (5%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   + V+ ++  E +++ +T I   S+++ +     ++ ++     +  ++ +  A
Sbjct: 803  TISFNLPEGVSLSQASEAIERTMTAIGVPSSVRGSFAGTAQVFQQSQSSQLWLMLAAIAA 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  +L LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDTPFSLIALIGILLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW------GGS 792
            ++ D   +  +     +S R+ I ++        + T      ++            G  
Sbjct: 923  MMVDFALEAERNGQ--LSAREAIFQACLLRFRPIMMT---TLAALFGALPLVLSSGDGAE 977

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +     I +A G+V++   +++    + L +   R K   +
Sbjct: 978  LRQPLGITIAGGLVMSQLLTLYTTPVVYLMMDKLRRKKRPL 1018


>gi|218130571|ref|ZP_03459375.1| hypothetical protein BACEGG_02160 [Bacteroides eggerthii DSM 20697]
 gi|217986915|gb|EEC53246.1| hypothetical protein BACEGG_02160 [Bacteroides eggerthii DSM 20697]
          Length = 1037

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/679 (12%), Positives = 202/679 (29%), Gaps = 40/679 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++ A         ++++P   P   I+                 
Sbjct: 9   RPVLSGVISVVIVLMGVISAF-----TLPVEQYPDIAPPT-IN--------VWATYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   + +  +E  + ++       +        I + F      +  A  V   + G
Sbjct: 55  AETVQKAVIVPLEEAINGVEDMTYMTSTASNTGDASINIYFKQGANADMAAVNVQNRVNG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  +  K  + T  ++   ++                +  +      ++       
Sbjct: 115 VLSQLPAEATKTGVTTEKQQNAELLTFALYSPDDRFDQTFLNNYVKINVEPKLKRIGGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P ++ Q       +S      N       FG         N+Y
Sbjct: 175 KTQLFGS-NYSMRLWLRPDKMAQYGLIPDDISSVLAKQNIEAATGSFGANHPT---ANEY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +S                +    +     G          N+           
Sbjct: 231 TMKYRGRLS-------------TAKEFGELVIKSLPGGDVLRLKDVANVELGDEYYNYST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        + + KA  + + TI     +   L+         +V          S + 
Sbjct: 278 EVNGHPAAIMLINQKAGSNASSTINEIHEVLDDLKRDLPEGAEFVVLTDTNKFLYASINS 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   K  L+   SIF+++I T A++S++G ++ L ++  +V
Sbjct: 338 VIRTLIEAILLVIVVVYVFLQDIKSTLIPTISIFVSIIGTFAVMSMIGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++ +  +   S   + D       S I  S I  +   + +   
Sbjct: 398 LAIGTVVDDAIVVVEAVQAKFDEGYQSPVLAADDAMKGVSSAILTSTIIFMAVFIPVAMM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG +      F ITM +++ IS   A ++  A+         +        +        
Sbjct: 458 GGTSGAFYAQFGITMAVAVGISAVNAFTLSPALCALF-LKPYIDEHGNTKNNFAARFRKA 516

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F R     V   +        L  T  +++G+       + V     +      + 
Sbjct: 517 FNAVFDRLSRRYVRAVLYIIHRRWLLWGTIAVSFGLLVLF---VNVTKTGLIPQEDTGTV 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           + S+     S      +    +  +      +  +  +       +           +  
Sbjct: 574 MVSMNTKPGSSMAQTNKVMERINSRLDSIGEIEYSGAVAGFSFSGSGPSQAMYFMTLKDW 633

Query: 658 GPKISRELIRKGIVGVIIS 676
             +        G++G I +
Sbjct: 634 DQRKGEGQSVDGVIGKIYA 652



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ + I  T    ++ G   NL  + A++  IG  V+D +VV + ++   
Sbjct: 359 DIKSTLIPTISIFVSIIGTFAVMSMIGFSINLLTLFALVLAIGTVVDDAIVVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S     D ++       + +++      +P+A+ GG+       F I MA  +
Sbjct: 419 DEGY--QSPVLAADDAMKGVSSAILTSTIIFMAVFIPVAMMGGTSGAFYAQFGITMAVAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A ++  ++  +      
Sbjct: 477 GISAVNAFTLSPALCALFLK 496



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 63/166 (37%), Gaps = 9/166 (5%)

Query: 672  GVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             +I     +LIY+    +    +     + ++   +  +  F  LFG+E N+     ++ 
Sbjct: 873  SLIFVLCMVLIYLILCALYESAFIPFAVLLSVPCGLMGSFLFAWLFGLENNIYMQTGLIM 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +IG      +++ +      K  +  ++       +    L   + T ++    ++P+ +
Sbjct: 933  IIGLLAKTAILLTE---YAGKRRSEGMTLAQAAYSAAKVRLRPILMTVLSMVFGLIPLMM 989

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                G +   S A  +  G++V   + +F+   + +     + +  
Sbjct: 990  AHGVGANGSRSLATGVIGGMIVGTLALLFLVPSLFIVFQYIQERVK 1035


>gi|145589053|ref|YP_001155650.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047459|gb|ABP34086.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 1042

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/678 (10%), Positives = 176/678 (25%), Gaps = 44/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  IG +           + ++P+ +P               + +    
Sbjct: 9   RPVLANVIALIMVLIGGVCIF-----GLPISQYPNIVPPT-------------IQVTTSY 50

Query: 63  DDFVNGFLQMYSDE-LRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +Q      + + +           S     N  +T++F      E     V  
Sbjct: 51  PGASATLVQQLVASNIETQVNGVDGMLYMESSSTDSGNYTLTVTFQVGTDPELAQVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L    +K  + T T+    +              +  S     +   ++   
Sbjct: 111 RVAIALPALPQAVQKQGVTTKTQSTAILQFVTLTSTNPDHDGLFLSNLANLKLQQRLARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L+      + +       N        G        
Sbjct: 171 PGVAAANVFGVGNYSMRIWLDPAQLKMRNLMPSDVIAVINKQNVLLTSGQIGAPPTPLGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +     ++                +    +      +   +      I       
Sbjct: 231 DFQLTLNVTSAMT-------------TPEQFGNIVVKTGTKSDITYLRDVARIQMGSQNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +     +        +           +          
Sbjct: 278 SQFFKINDKAAGGIAIYQMPGANALAVAQAVRQEMEKITKTLPKEVAWEIPFDTTMFVQA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVL V+ + +   +  LV   ++ + +I   A ++ LG T+ L ++
Sbjct: 338 SIHEVYKTLYEAGILVLFVIIVFLQNWRATLVPATTVPVTIIGAFACMAALGFTINLITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVV 476
             IVL IG+ VD  I+V E + ++  + +     ++D         I  + +   +    
Sbjct: 398 FAIVLCIGIVVDDAIVVVEAVSKKVEEGEDPKQGAIDAMTQLMGPIIGITLVLMAVFLPA 457

Query: 477 LFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F  G      R FA+ +  + LIS   AI++        +R     ++      +F   
Sbjct: 458 SFISGVTGQMYRQFALVIAATALISGINAITLKPTQAATYLRPIDPNAVKNQFYQKFDQY 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICL-----LFTHGLNYGIDFKGGIQLGVLANRPV 589
            D ++  +       +          + +     +    +  G          +++    
Sbjct: 518 FDRLSSWYEHQIHKLMNNRPKAIAFGVSIIAASLIGLAMIPSGFIPNEDQGYLLVSVTLP 577

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D S ++   E ++      +   G    +V       ++ +       +   +       
Sbjct: 578 DASSLQRTEEGMKKAVDVLREIPGVDRVVVIGGINLINNSSIQSNTGGLYVILKPWDVRG 637

Query: 650 TIQNTEIVGPKISRELIR 667
             +    V   ++  L +
Sbjct: 638 RGEGLRDVYIAMNERLKQ 655



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 86/240 (35%), Gaps = 11/240 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +++ +       Q        ++        S    +VLE +  +          +    
Sbjct: 804  DIKEVNGPSFVNQFQLYPSAAILGAASDGYSSGQVMQVLENLATQTLPDGVAFQWEGMSY 863

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                +   +    ++   +S + + + +  +++ W   L  +T + L ++  +   AL G
Sbjct: 864  QEKLVGNTI----VLIFGLSILLVYLVLAAQYETWVAPLSVLTAVPLSLSGPVLALALTG 919

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +  N+     ++ +I  S  + +++ +   +        +SF +   ++        V T
Sbjct: 920  LPNNIYVQIGLVLMIALSCKNSILIVEVALE---CKHKGMSFVESALEASKVRFRAIVMT 976

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S+A  + V+P+      G +   S  I +  G++ +   ++ +     + I  +     +
Sbjct: 977  SIAFILGVMPLIFSSGAGAAARISLGITVFSGMIASTCLAVALVPVFYVEIETFFENRTK 1036


>gi|257055540|ref|YP_003133372.1| protein-export membrane protein SecD [Saccharomonospora viridis DSM
           43017]
 gi|256585412|gb|ACU96545.1| protein-export membrane protein SecD [Saccharomonospora viridis DSM
           43017]
          Length = 603

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 121/578 (20%), Positives = 217/578 (37%), Gaps = 71/578 (12%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
               + ++    L   +      S               LG+DL+GG+ + L     D  
Sbjct: 12  RYFAFFVVIVAALYSLVFFTGDGSPTP-----------KLGIDLKGGTRVTLTARTPDGS 60

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD--SRFKENIADKVTLFLQG 121
                 LQ     + + +   G+    +    N + ++         + +     L  + 
Sbjct: 61  EPSREQLQQARQIIENRVNGIGVSGAEVLLDGNNVVITVPGDQGEQAKTLGQTAKLGFRQ 120

Query: 122 VNSKLNVDPKKNLLVTTTEKE--------------------------------------- 142
           V + +          +                                            
Sbjct: 121 VLAAVPAAGPAQQPESGAGSGEDSDGEDGQGSESGEDGKDTEQGSADEDGAADEDSDADS 180

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
                +Q         A  Q  +   +  D       T Q   + +I       QDP+ L
Sbjct: 181 ADSGDTQGGGSTPPGSAPTQQSDESDRDDDDGDRDGRTEQEKAAEQIQEAKKWRQDPALL 240

Query: 203 ------------RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
                        Q             L   +            + DG +  V   V + 
Sbjct: 241 PTGPEDQAEAQQLQQQALARLTCDPDTLDPLAGNDDPNLPLVTCNQDGTEKYVLSPVFLE 300

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
           G  ++ A+A +D +    VV++SFD  GA  + + T  NIG+  A VLD  V++AP IN+
Sbjct: 301 GTSISNASAVYDTQGGGWVVNLSFDSEGADTWADFTAQNIGERAAFVLDTEVVSAPSINE 360

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
           AI  G  +ISG FT   A  LA +L+ GSLP+     +   V A LG  ++  G  A   
Sbjct: 361 AIAGGDTRISGQFTQSEAQNLADVLKYGSLPLSFESSDATTVSATLGMATLKAGLIAGAI 420

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGL 426
           GL L+ ++ ++ Y   G++   S+ L+ ++  A+L LL      TL +  + G ++ +G+
Sbjct: 421 GLALVFVYCLLYYRILGVLTVLSLALSALIVYAVLVLLGRWIDYTLDIAGVVGFIVAVGV 480

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
             DS ++  ERI++E R+ ++   ++  G+ +A  TI  S+    +A  VL+    G V+
Sbjct: 481 TADSFVVYFERIKDEMREGRTFRSAVPRGWVKARRTILASDAIMFLAAGVLYVLAVGEVK 540

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GFA T+G+S ++ +     +   +++ + R KK+ S  
Sbjct: 541 GFAFTLGMSTVLDLIVVFLVTHPLVVVVSRSKKLSSPR 578



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 26/263 (9%), Positives = 87/263 (33%), Gaps = 14/263 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            GG  + +  +     +      +++        + +      +      GD+    +  
Sbjct: 315 GGGWVVNLSFDSEGADTWADFTAQNIGERAAFVLDTEVVSAPSINEAIAGGDTRISGQFT 374

Query: 636 EMVKKKITEIVPL------STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           +   + + +++            +   V   +    ++ G++   I    + +Y  + ++
Sbjct: 375 QSEAQNLADVLKYGSLPLSFESSDATTVSATLGMATLKAGLIAGAIGLALVFVYCLLYYR 434

Query: 690 WYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +  + +L L          L G       ++  V   +  +G + +  VV ++R++
Sbjct: 435 I-LGVLTVLSLALSALIVYAVLVLLGRWIDYTLDIAGVVGFIVAVGVTADSFVVYFERIK 493

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
             M+      +FR  + +   +     + +    F++   + V     +  FA  +    
Sbjct: 494 DEMRE---GRTFRSAVPRGWVKARRTILASDAIMFLAAGVLYVLAVGEVKGFAFTLGMST 550

Query: 806 VVAASSSIFIAAPILLFIYDWRA 828
           V+       +  P+++ +   + 
Sbjct: 551 VLDLIVVFLVTHPLVVVVSRSKK 573


>gi|71901427|ref|ZP_00683517.1| SecD/SecF/SecDF export membrane protein [Xylella fastidiosa Ann-1]
 gi|71728798|gb|EAO30939.1| SecD/SecF/SecDF export membrane protein [Xylella fastidiosa Ann-1]
          Length = 321

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 148/275 (53%), Gaps = 4/275 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIP+   I FMR R   + +  +    S+ ++   G NY ++F GG  +     +PVD 
Sbjct: 7   HLIPNDTKIDFMRWRKPTLSLMSILFAVSVLVVVFKGFNYALEFTGGTLVRTQFAKPVDA 66

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQY--QPGDSVAQTRVLEMVKKKITEIVPLS 649
             VR  LE   +G+   Q+  G    L+RLQ   +  +        E V+K IT     +
Sbjct: 67  DQVRQRLEVGGLGNAQVQSVGGGNELLIRLQPYGEHNNDDVAKNAAEAVRKVITLPDNPA 126

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           T+Q  E VGP++ ++L   G+   I   +  LIYI  RF+W FA+ A  T   D+  T+ 
Sbjct: 127 TVQPGEFVGPQVGKDLAMNGVYATIFMLLGFLIYIGFRFEWKFAVAASLTAFFDLILTIA 186

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           + +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   +++++SIN+TL
Sbjct: 187 YMSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSL--RVEPLEVLNRSINQTL 244

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            R+V T++  F+S   + ++GG  +   A     G
Sbjct: 245 SRTVITAVMFFLSAFALYLYGGRSMEGLAETHMAG 279


>gi|152994330|ref|YP_001339165.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Marinomonas
           sp. MWYL1]
 gi|150835254|gb|ABR69230.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Marinomonas sp. MWYL1]
          Length = 1034

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/576 (12%), Positives = 162/576 (28%), Gaps = 48/576 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL      LP   + +FP   P               + +    
Sbjct: 8   RPNFAWVMAIFILLAGLLA-----LPTLPVSQFPVVAPP-------------QVEITATY 49

Query: 63  DDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                   +   +  +   L   +G+  F      N   +IT SF      +     +  
Sbjct: 50  PGASAQVLVDSVTSVIEEELNGAKGLLYFDSSSNANGIAQITASFEPGTDPDLAQVDIQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIG 175
            L+   ++L        +         +++       D      I  +    R   + I 
Sbjct: 110 RLKKAEARLPSSVIAQGVQVDQASSGFLMIYALTFKGDDSSKSIIALADYAARNINNNIR 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +   +          +     P +L     +   ++      N       FG R   D
Sbjct: 170 RVKGVGKLQYFGT-EAAMRVWVSPEKLLSYGLSIGDINNAIRNQNVQVPAGSFGGRPADD 228

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +      +                 F     +    +    +     +      +     
Sbjct: 229 AQELTASL-------------VVKGFLEDPEEFGNIVLRSNVDGSAVYLKDVARVELGKQ 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  L                +   T++     AA L A                  
Sbjct: 276 DYNFETRLNGHKAIMGAVQLSPGANAIETVKAIKARAAELEANFPDDIQISFPYDTSKFV 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      T      LV +V+ + +   ++ L+    + + ++ T A++SL+G ++ + 
Sbjct: 336 SAAIEKVIYTLIEAIVLVFLVMLLFLQNLRYTLIPTIVVPVCILGTFAVMSLMGFSVNMM 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++ G+VL IG+ VD  I+V E +      +      +      +    I    +      
Sbjct: 396 TMFGMVLAIGILVDDAIVVVENVERIMVEEGLPPKDATIKAMGQVSGAIVGITLVLSAVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V L F  G      + F++++ +SI++S   A++   A+   +     +K I+       
Sbjct: 456 VPLAFMSGSVGIIYQQFSMSLAVSIMLSGILALTFTPALCATL-----LKPINKEAHHEK 510

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                    +F R       ++ +    S   +  +
Sbjct: 511 GGFFGWFNRKFARLTHRYSILNGMLVNRSGRFMLVY 546



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + L     + + I  T    +L G   N+  +  ++  IG  V+D +VV + +     
Sbjct: 364 LRYTLIPTIVVPVCILGTFAVMSLMGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERI 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  +D   K++ +  G  V  ++      +P+A   GSV      F++ +A  I+
Sbjct: 422 MVEEGLPPKDATIKAMGQVSGAIVGITLVLSAVFVPLAFMSGSVGIIYQQFSMSLAVSIM 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++     +   +  
Sbjct: 482 LSGILALTFTPALCATLLK 500



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      I  + +     +    L G+  ++     ++T+IG S  + +++ +  +   
Sbjct: 889  SWSIPFSVILIIPIGALGAVAAVYLMGMSNDVYFKVGLITIIGLSAKNAILIVEFAKD-- 946

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             LY    S ++   ++        + TSMA  + V+P+ +    G +   S  + +  G+
Sbjct: 947  -LYQQGHSLKESAIQAAKLRFRPIIMTSMAFILGVVPLTIATGAGAASQHSLGVSVIGGM 1005

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    +        ++      + +
Sbjct: 1006 ISATVLGVLFVPVFFTWVLGRFKASNK 1032


>gi|107103034|ref|ZP_01366952.1| hypothetical protein PaerPA_01004103 [Pseudomonas aeruginosa PACS2]
          Length = 1053

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/523 (12%), Positives = 151/523 (28%), Gaps = 36/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              + ++L  ++   G++        Q  L  +P+  P               +      
Sbjct: 10  RPIFAIVLSVLMMIGGIVS-----FFQLPLSEYPAVTPPT-----------VQVTTAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFL 119
              D +   +    ++  + ++               I T++F      +    +V   +
Sbjct: 54  ANPDVIAQTVATPLEQAITGVEGMLYMSSQSATDGRMILTITFDQHIDPDMAQIQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V S+L  + ++  +VT       +++      +     +  S     Q  D++     
Sbjct: 114 SRVLSRLPDEVQRQGVVTQKTSPDILMVVHLLSPEQRYDPLYISNYAYLQVRDELLRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               +        +    DP  +     T  ++       N        G      +   
Sbjct: 174 ISDVVVWGAGEYSMRLWLDPDLIAARGLTAGEVIAAVREQNVQVAAGAVGQAP-DSTAAF 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V     +S                +    I       +         I         
Sbjct: 233 QVTVNTLGRLSDEE-------------QFGDIIVRTGADGQVTRLRDVARIEMGGDAYAL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +   T E      A L           +          S 
Sbjct: 280 RSLLDGEPAVALQIIQSPGANALDTAEAVRATVARLEGNFPAGLSARIAYDPTVFVRASL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  L+   ++ ++++ T A++ L+G +L   S+ G
Sbjct: 340 QTVATTLLEAILLVVVVVVLFLRSWRASLIPLMAVPVSLVGTFAVMHLMGFSLNTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV--- 476
           +VL IG+ VD  I+V E +       +    +           I           +    
Sbjct: 400 LVLSIGIVVDDAIVVVENVERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAF 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           L    G   R FA+T+ +S ++S   ++++  A+   ++R + 
Sbjct: 460 LSGLQGEFYRQFALTIAISTILSALNSLTLSPALAGLLLRPRP 502



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 6/166 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +  +   +A LI       W   L  +  + + +   +    L G + N+     ++ L
Sbjct: 877  FIFPLCVLLAYLILAAQYNSWLLPLAVLLIVPMCLLSAIAGVWLVGGDNNVFVQIGLVVL 936

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G +  + +++ +  R    L        + + ++    L   + TS+A    V+P+ + 
Sbjct: 937  VGLAAKNAILIVEFAR---TLEAEGARALEAVVEACRLRLRPILMTSLAFIAGVVPLVMA 993

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +  +  + +  G++      +F+     + +    A+  R
Sbjct: 994  SGAGAEMRQAMGVAVFAGMLGVTLFGLFLTPVFYVLVRALAARLER 1039



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  +L  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + +   
Sbjct: 362 RSWRASLIPLMAVPVSLVGTFAVMHLMGFSLNTLSLFGLVLSIGIVVDDAIVVVENV--- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +             ++++E  G  +  TS   A FI    ++   G     FA+     
Sbjct: 419 ERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAFLSGLQGEFYRQFALT--IA 476

Query: 805 I--VVAASSSIFIAAPILLFIYDWR 827
           I  +++A +S+ ++  +   +   R
Sbjct: 477 ISTILSALNSLTLSPALAGLLLRPR 501


>gi|332882361|ref|ZP_08449989.1| RND transporter, HAE1 family [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679745|gb|EGJ52714.1| RND transporter, HAE1 family [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 1013

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/635 (11%), Positives = 177/635 (27%), Gaps = 42/635 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I   G++           +  +PS                        
Sbjct: 9   RRPVLATVMTVIILLFGMI-----GYFYIGVREYPSVDNPII---------SVSCSYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLTSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     +      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADASPILMVALQSE--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     T   +                        D    
Sbjct: 173 SVSIWGEKKYSMRLWLDPIKMAGYGITPMDVKNAV--------------------DNENV 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                     T K   D+     G +              A +    
Sbjct: 213 ELPSGSIEGNTIELNIRTMGLMNTAKMFDDLIVKHEGNQIIRFSDIGRAELGAADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S + 
Sbjct: 273 KMNGVPMVGVVVVPQPGANHINIADAVYERMEQMKKDLPDDVHYSYGFDNTKFIRASINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV+I++F+ +   +  LV    I ++++ +  ++ L G ++ + ++  +V
Sbjct: 333 VKQTVYEAFVLVIIIIFLFLRDWRVTLVPCIVIPVSLVGSFFIMYLFGFSINVLTMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  +   +   G    +  +  + +T +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYIRIEQGMNPKKAGIEGAKEIFFAVISTTVTLVAVFFPIVFME 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF---FLIP 535
              G   R F++ +  +++IS F A++    +   +++ +K K+        F       
Sbjct: 453 GTTGRLFREFSMVISGAVVISSFAALTFTPMLATKLLKQQKKKNAFYRITEPFFIGMNNM 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              ++Q +          I+  + +I  L+    +     +    + +       ++   
Sbjct: 513 YSRSLQVVLRHRIWTLPVIVLMLGAIVYLWGAIPSEMAPLEDRSMITINTRGAEGVTYEY 572

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
               +  I  I             R+    G+   
Sbjct: 573 IRDYTEDINSIVDSVIPDADAVTARVSSGSGNIQI 607



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +   I++ + + + +  +F+ +      + T+ L I   L F     I  N+ +   ++ 
Sbjct: 846  MFAFILALVLIYLILAAQFESFKDPFIIMLTVPLAIAGALIFMYFNDITMNVFSQIGIIM 905

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +    N+K           +  +  + L   + TS +  + ++P+A 
Sbjct: 906  LIGLVAKNGILIVE--FANLKQ-ENGEDKVTAVHDAALQRLRPILMTSASTVLGLIPLAF 962

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G          I +  G+VV+   +++I   +  +I   R    
Sbjct: 963  ATGEGCNQRIAMGIAVVGGMVVSTFLTMYIVPAVYSYISTNRINKK 1008



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 55/525 (10%), Positives = 143/525 (27%), Gaps = 40/525 (7%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R+  W + +  +     ++        +       S +  N        RG   +  E 
Sbjct: 521  LRHRIWTLPVIVL-MLGAIVYLWGAIPSEMAPLEDRSMITINT-------RGAEGVTYE- 571

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                ++  + +  +  + S +         +      I +   D   ++    +    L 
Sbjct: 572  ----YIRDYTEDINSIVDSVIPDADAVTARVSSGSGNIQIRLKDMGDRDYTQMEAAEKLS 627

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                               + +    + Q +       ++     +    I+++      
Sbjct: 628  QA--------------VKKKTKARAFVQQQSSFGGRRSSMPIQYVLQATNIEKLEKVLPV 673

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                     + Q+           L  +  ++  H      +  G            G  
Sbjct: 674  FMEKVYENPVFQMADVD-------LKFSKPEIRIHINRDKANIMGVNTRDLSETLQYGLS 726

Query: 241  YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    ++G            + +KP    +     +        + I    ++    
Sbjct: 727  GQRMGYFYMNGKQYEILGEINRQQRNKPADLRAIYLRSSDGKMIQMDNLIELESSIAPPK 786

Query: 301  RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   ++    +  A ++   TI         +    L          +      S S
Sbjct: 787  LYRYNRFVSA---TISAGLAEGKTIGQGLDEMDKIAKEVLDDTFRTSLSGDSKEFRESSS 843

Query: 361  IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                   +   L+ ++L       K   +   ++ L +   L  +     T+ + S  GI
Sbjct: 844  SLMFAFILALVLIYLILAAQFESFKDPFIIMLTVPLAIAGALIFMYFNDITMNVFSQIGI 903

Query: 421  VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            ++ IGL   + IL+ E    +    +    ++     +    I  ++ + ++  + L F 
Sbjct: 904  IMLIGLVAKNGILIVEFANLKQENGEDKVTAVHDAALQRLRPILMTSASTVLGLIPLAFA 963

Query: 481  GGGAVRG---FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             G          I +   +++S F  + IV A+  +I   +  K 
Sbjct: 964  TGEGCNQRIAMGIAVVGGMVVSTFLTMYIVPAVYSYISTNRINKK 1008



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 73/194 (37%), Gaps = 9/194 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +E +KK + + V  S   +          E+ +      ++  I + +++    
Sbjct: 297 DAVYERMEQMKKDLPDDVHYSYGFDNTKFIRASINEVKQTVYEAFVLVIIIIFLFL---R 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +  +     LFG   N+  + AV+  +G  V+D +V+ + +    
Sbjct: 354 DWRVTLVPCIVIPVSLVGSFFIMYLFGFSINVLTMLAVVLAVGLVVDDAIVMTENI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 ++ +    +   E     + T++       P+    G+       F++ ++  +
Sbjct: 411 IRIEQGMNPKKAGIEGAKEIFFAVISTTVTLVAVFFPIVFMEGTTGRLFREFSMVISGAV 470

Query: 806 VVAASSSIFIAAPI 819
           V+++ +++     +
Sbjct: 471 VISSFAALTFTPML 484


>gi|241766984|ref|ZP_04764778.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax delafieldii 2AN]
 gi|241362518|gb|EER58419.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidovorax delafieldii 2AN]
          Length = 1052

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/521 (12%), Positives = 141/521 (27%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +  +G +        +  + ++PS  P               +V+    
Sbjct: 8   RPIFAWVIALFVMVLGAVSI-----TRLPVAQYPSVAPPT-------------IVVTAAY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKK---EGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  L+      +   +             +      +TLSF      +    +V  
Sbjct: 50  PGASAQTLEDSVLAVIEREMNGAPGLAYMEAVSQANGTGTLTLSFEPGTNPDLAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L     +  +     +   ++ +  +           S    R  + ++   
Sbjct: 110 RLSRATPRLPSVVTQQGVRVDKSRSNFLLFTMMSSSDPKFDVNALSDYAARNVVPELQRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L+    + A ++      N        G        
Sbjct: 170 PGIGQVQLFGA-ERAMRIWVDPAKLQGYNLSAADVAAAIQAQNAQVSAGSLGELPNMSGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    +IS                +    +                 I       
Sbjct: 229 AISATVVVPGQISST-------------KEFGDIVLRANPDGSTVRLKDVARIELGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +            A L     P     +   +      
Sbjct: 276 ATTARLNGKPATGMGVQLSPSGNALAAATAVKTRMAELEKYFPPGVSWTIPYDSSDFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ ++    + + ++ T   L  +G ++ + ++
Sbjct: 336 SIKQVAETLLEAIVLVFLVMFLFLQNFRYTVIPTIVVPVALLGTFGALLAMGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +    I    +  +   + 
Sbjct: 396 FGMVLVIGIVVDDAIVVVENVERIMGEEGLPPLEATRKAMGQISGAIIGITVVLISVFLP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           L FF    G   R F+  M +SI  S F A+S+  A+   +
Sbjct: 456 LAFFAGSVGNIYRQFSAVMAVSIAFSAFMALSLTPALCATL 496



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q    + +        +       G+++A    ++    ++ +  P 
Sbjct: 260 VRLKDVARIELGAQSYATTARLNGKPATGMGVQLSPSGNALAAATAVKTRMAELEKYFPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I++    ++ + + + + +++  + + + +     + + +  T
Sbjct: 320 GVSWTIPYDSSDFVKISIKQVAETLLEAIVLVFLVMFLFLQNFRYTVIPTIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G     G   N+  +  ++ +IG  V+D +VV + +     +    +   +   K++ +
Sbjct: 380 FGALLAMGFSINVLTMFGMVLVIGIVVDDAIVVVENV--ERIMGEEGLPPLEATRKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      LP+A + GSV      F+  MA  I  +A  ++ +   +   + 
Sbjct: 438 ISGAIIGITVVLISVFLPLAFFAGSVGNIYRQFSAVMAVSIAFSAFMALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 69/179 (38%), Gaps = 8/179 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            E + +       L      E  G     +L   + +V    + +A+ + +   ++ W   
Sbjct: 835  EAMAEMERMAAQLPAGFGFEWTGQSREEKLAGSQAVVLYGFAILAVFLCLAALYESWSIP 894

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  I  + L +   L   +L G+  ++     ++T+IG S  + +++ +  +    L   
Sbjct: 895  LSVILVVPLGVLGVLLGISLRGMTNDVYFQVGLITIIGLSAKNAILIIEFAKD---LQAQ 951

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA 809
                 +    + +      + TS+A  + V+P+A+  G+      +    +  G+VV  
Sbjct: 952  GKGVVESALAAAHLRFRPIIMTSLAFILGVVPLAMASGASSASQRAIGTGVIAGMVVGT 1010


>gi|261838831|gb|ACX98597.1| protein-export membrane protein [Helicobacter pylori 51]
          Length = 525

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 157/544 (28%), Positives = 276/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICALLLGVGFSVPSLLETKGP----------KIALGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+S+  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENESIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 73/157 (46%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++      S    I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---SIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|311748360|ref|ZP_07722145.1| HAE1 efflux family protein [Algoriphagus sp. PR1]
 gi|311302778|gb|EAZ81117.2| HAE1 efflux family protein [Algoriphagus sp. PR1]
          Length = 1050

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/535 (12%), Positives = 154/535 (28%), Gaps = 39/535 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  MI  +G L        Q  + +FP   P               +     
Sbjct: 7   RRPVFAIVISVMIVFVGSLAI-----KQLPISQFPQIAPTTV---------NIFIAYPGS 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKVTL 117
             D     ++     L + +    G+   +       +  + + F           +V  
Sbjct: 53  SADV---LVKSTLITLENSINGVQGMRYMATDATSAGEATLRVIFEPGTDPNQAVIRVKT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V   L    ++  +V T  +   ++                      Q I ++   
Sbjct: 110 RVDQVMPLLPELVQREGVVITPIQPSMLMYVNLYAKDQRMDEKFLYNYANVQMIPELNRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP R+R    +  ++       +   +    G     ++ 
Sbjct: 170 KGVARSQILGSRRYAMRVWLDPDRMRAYDISVDEVMEALQEQSIVGRPGRIGRSSGIEAQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y++  K                 +  +    I        +        +       
Sbjct: 230 SLEYVLTYKGR-------------YNEPEQYENVIVRANSAGEKIRLKDIGKVELGSEFF 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        +       + +  I         ++    P     +          
Sbjct: 277 DIYSNLDGHPSAAIVLKQNYGSNASDVIAEVKAKLEDMKTKFPPGLDYKISYDVSKFLDA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  L+   ++ +++I    ++   G ++ L ++
Sbjct: 337 SIEQVIHTLRDAFILVAIVVFIFLGDWRSTLIPILAVPVSLIGAFFVIQFFGLSINLVTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E +  +     + + + ++          I       +   +
Sbjct: 397 FALVLAIGIVVDDAIVVVEAVHAKMEDFPHLTPYQAVKRVLGEISGAIIAITAVMVSVFL 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            + F  G      R F+ITM  SI+IS   A+++   +   +++         N 
Sbjct: 457 PISFMSGPVGTFYRQFSITMASSIVISAIIALTLTPVLCAMLLKNHHGHEKKRNF 511



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 96/279 (34%), Gaps = 14/279 (5%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                            + +    + V AN   +   ++   +     +      + + +
Sbjct: 226 IEAQSLEYVLTYKGRYNEPEQYENVIVRANSAGEKIRLKDIGKVELGSEFFDIYSNLDGH 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGV 673
               +  +       + V+  VK K+ ++           +   +S+ L   I + I  +
Sbjct: 286 PSAAIVLKQNYGSNASDVIAEVKAKLEDMKTKFPPGLDYKISYDVSKFLDASIEQVIHTL 345

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + I + I ++I    W   L  I  + + +         FG+  NL  + A++  IG 
Sbjct: 346 RDAFILVAIVVFIFLGDWRSTLIPILAVPVSLIGAFFVIQFFGLSINLVTLFALVLAIGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA--VWG 790
            V+D +VV + +   M+ +   ++    + + + E  G  +       + V       + 
Sbjct: 406 VVDDAIVVVEAVHAKMEDFPH-LTPYQAVKRVLGEISGAII---AITAVMVSVFLPISFM 461

Query: 791 GSVI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              +      F+I MA  IV++A  ++ +   +   +  
Sbjct: 462 SGPVGTFYRQFSITMASSIVISAIIALTLTPVLCAMLLK 500



 Score = 51.2 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/319 (9%), Positives = 81/319 (25%), Gaps = 6/319 (1%)

Query: 510  MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
            +  F         ++IN                      G      F             
Sbjct: 715  LFTFFAANYPQYELEINNDLAMQKGVSIGKAMENLNILIGSTYEQGFIKFGRFFKVYVQS 774

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            +          L +         V  S   +L+      +           ++  P    
Sbjct: 775  DPKFRRLPSDVLKLYVKNESGEMVPYSAFMTLKKTQGPNEVTRYNMYNSAAIRGLPAKGY 834

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                 +  +++     +P       E +    S        + +I+      +       
Sbjct: 835  TTADAIAAIREVAATTLPKGYDIAWEGLSYDESNRGNESLYIFIIVLVFVYFVLAAQYES 894

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            +   L  + +L + +  +       G++ ++ A   ++ L+G    + V++ +     ++
Sbjct: 895  FIIPLAVVFSLPVGVFGSFLLLKGMGLQNDIYAQIGLIMLVGLLGKNAVLIVEFA---VQ 951

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIV 806
                 +S  +   +         + TS A    ++P+    G   I   +       G++
Sbjct: 952  KRQEGLSILEAAIEGAKVRFRPILMTSFAFIAGLIPLIMATGAGAIGNRTIGASAMGGML 1011

Query: 807  VAASSSIFIAAPILLFIYD 825
                  + I   +      
Sbjct: 1012 FGTIFGVIIVPGLYYIFGK 1030


>gi|313108867|ref|ZP_07794850.1| putative RND efflux transporter [Pseudomonas aeruginosa 39016]
 gi|310881352|gb|EFQ39946.1| putative RND efflux transporter [Pseudomonas aeruginosa 39016]
          Length = 1053

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/523 (12%), Positives = 151/523 (28%), Gaps = 36/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              + ++L  ++   G++        Q  L  +P+  P               +      
Sbjct: 10  RPIFAIVLSVLMMIGGIVS-----FFQLPLSEYPAVTPPT-----------VQVTTAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFL 119
              D +   +    ++  + ++               I T++F      +    +V   +
Sbjct: 54  ANPDVIAQTVATPLEQAITGVEGMLYMSSQSATDGRMILTITFDQHIDPDMAQIQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V S+L  + ++  +VT       +++      +     +  S     Q  D++     
Sbjct: 114 SRVLSRLPDEVQRQGVVTQKTSPDILMVVHLLSPEQRYDPLYISNYAYLQVRDELLRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               +        +    DP  +     T  ++       N        G      +   
Sbjct: 174 ISDVVVWGAGEYSMRLWLDPDLIAARGLTAGEVIAAVREQNVQVAAGAVGQAP-DSTAAF 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V     +S                +    I       +         I         
Sbjct: 233 QVTVNTLGRLSDEE-------------QFGDIIVRTGADGQVTRLRDVARIEMGGDAYAL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +   T E      A L           +          S 
Sbjct: 280 RSLLDGEPAVALQIVQSPGANALDTAEAVRATVARLEGNFPAGLSARIAYDPTVFVRASL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  L+   ++ ++++ T A++ L+G +L   S+ G
Sbjct: 340 QTVATTLLEAILLVVVVVVLFLRSWRASLIPLMAVPVSLVGTFAIMHLMGFSLNTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV--- 476
           +VL IG+ VD  I+V E +       +    +           I           +    
Sbjct: 400 LVLSIGIVVDDAIVVVENVERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAF 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           L    G   R FA+T+ +S ++S   ++++  A+   ++R + 
Sbjct: 460 LSGLQGEFYRQFALTIAISTILSALNSLTLSPALAGLLLRPRP 502



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 6/166 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +  +   +A LI       W   L  +  + + +   +    L G + N+     ++ L
Sbjct: 877  FIFPLCVLLAYLILAAQYNSWLLPLAVLLIVPMCLLSAIAGVWLVGGDNNVFVQIGLVVL 936

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G +  + +++ +  R    L        + + ++    L   + TS+A    V+P+ + 
Sbjct: 937  VGLAAKNAILIVEFAR---TLEAEGARALEAVVEACRLRLRPILMTSLAFIAGVVPLVMA 993

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +  +  + +  G++      +F+     + +    A+  R
Sbjct: 994  SGAGAEMRQAMGVAVFAGMLGVTLFGLFLTPVFYVLVRALAARLER 1039



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  +L  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + +   
Sbjct: 362 RSWRASLIPLMAVPVSLVGTFAIMHLMGFSLNTLSLFGLVLSIGIVVDDAIVVVENV--- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +             ++++E  G  +  TS   A FI    ++   G     FA+     
Sbjct: 419 ERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAFLSGLQGEFYRQFALT--IA 476

Query: 805 I--VVAASSSIFIAAPILLFIYDWR 827
           I  +++A +S+ ++  +   +   R
Sbjct: 477 ISTILSALNSLTLSPALAGLLLRPR 501


>gi|303246105|ref|ZP_07332386.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio fructosovorans JJ]
 gi|302492501|gb|EFL52372.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio fructosovorans JJ]
          Length = 1040

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/634 (11%), Positives = 167/634 (26%), Gaps = 50/634 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G++       P   + RFPS  P               + +    
Sbjct: 8   RPVFAWVVALFIILLGVIAI-----PNLPIARFPSVAPST-------------VTISATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
               +  +       +   L            S       I+ +F      +     V  
Sbjct: 50  PGATSQTMSDGVISLIERELSSVKNLLYFESSSDSSGAASISATFKPGTDPDMAQIDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ +  +L    ++N L   T     ++L     D            + R  +D++   
Sbjct: 110 KLKAIEPRLPQTVRQNGLTVETSASGFLMLVGLRSDDGRFDEAALGDYMARNIVDELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          +    DP++L     +   +S      N        G        
Sbjct: 170 EGVGRVQLFGA-EQAMRIWVDPAKLIAFGLSMNDLSAAVNQQNVQIAPGSVGAMPALPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  + ++S                +    +        +        +       
Sbjct: 229 RVTVSLTVQGQLS-------------TPEQFAAIVLRANPDGSKVVLGDVARVELGSQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                        A        +   T E      A LR+         +          
Sbjct: 276 GFINREDGKTATAAAVQLAPGANAVRTAEEVEARMAELRSTMPAGMSYSIPFNTAPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+      + ++ T A++   G ++ + ++
Sbjct: 336 SIEKVIHTLIEAMVLVFLVMFLFLQNIRYTLIPAIVAPIALLGTFAVMLASGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      K  S   +           +    +      + 
Sbjct: 396 FGMVLAIGIIVDDAIVVIENVERIMAEKGLSPRDATIQAMQEITGAVIGITLVLTAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSID 524
           +    G      + F ++M +SIL S F A+++  A+   +          +       +
Sbjct: 456 MGLVSGTVGAIYKQFTLSMAVSILFSAFLALTLTPALCATLLRPHAAGHHEKRGFFGWFN 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        +     R     +  + L +   +            + +G     + 
Sbjct: 516 RRFERMTSRYETRLGKLVTRTGRMMLVFAALCAALMVSFRHLPSSFLPEEDQGYFLASIQ 575

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                 +      +++ +    S  +       +
Sbjct: 576 LPADATVERTLEVVKAYEQHAASRPSIRSNMTVV 609



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 85/247 (34%), Gaps = 14/247 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q      +                 ++V     +E    ++   +
Sbjct: 258 SKVVLGDVARVELGSQSYGFINREDGKTATAAAVQLAPGANAVRTAEEVEARMAELRSTM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-----IRFKWYFALGAITTLI 701
           P     +         +  I K I  +I + + + + ++     IR+    A+ A   L 
Sbjct: 318 PAGMSYSIPFNTAPFVKISIEKVIHTLIEAMVLVFLVMFLFLQNIRYTLIPAIVAPIAL- 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T       G   N+  +  ++  IG  V+D +VV + +     +    +S RD  
Sbjct: 377 ---LGTFAVMLASGFSINVLTMFGMVLAIGIIVDDAIVVIENV--ERIMAEKGLSPRDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            +++ E  G  +  ++      +PM  V G  G++   F + MA  I+ +A  ++ +   
Sbjct: 432 IQAMQEITGAVIGITLVLTAVFIPMGLVSGTVGAIYKQFTLSMAVSILFSAFLALTLTPA 491

Query: 819 ILLFIYD 825
           +   +  
Sbjct: 492 LCATLLR 498



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 61/151 (40%), Gaps = 7/151 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             +  + + +S + + + +   ++ W   L  +  + L +   +G   L G+  ++     
Sbjct: 864  TQAPLLMALSILVVFLVLAALYESWTIPLSVMLVVPLGLLGAVGAVMLRGMPNDVFFKVG 923

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++T+IG S  + +++ +  +   +L        +    +    L   + TS+A  + V+P
Sbjct: 924  MITVIGLSAKNAILIIELAK---QLRQQGKGLAEAAVTAARLRLRPILMTSLAFGLGVVP 980

Query: 786  MAVWGG---SVIGSFAIPMAFGIVVAASSSI 813
            +    G       +    +  G+V A   +I
Sbjct: 981  LMFASGASAETQHAIGTGVFGGMVTATVLAI 1011


>gi|238762317|ref|ZP_04623288.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           kristensenii ATCC 33638]
 gi|238699302|gb|EEP92048.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           kristensenii ATCC 33638]
          Length = 1041

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/684 (9%), Positives = 184/684 (26%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITIVGWVS-----LHVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L + +     +         N   +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAIASPLEAQVNGVSNMLYMESTSGNNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       +    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPKQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P R+  L  +   +       N        G       
Sbjct: 169 INGVGDVQVFGARDYSMRVWLNPQRMESLNVSVQDIIAALQQQNVQAAAGQIGSSPSLPD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  ++                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLT-------------DPQEFANVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A   P     +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALEVANGVRDEMARLSASFPPDLTYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL V+++ +   +   +   +I ++++ T A+L + G +    S
Sbjct: 336 ATLHEIALSLTLTLIVVLAVVYLFLQSMRATFIVALTIPVSLLGTFAVLYVFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +      +   +   +     S+    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLSIDPNLTSAEATKKAMSQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V +       G   R FA+T+  ++++S   A+++  A+   +++ + + S  +      
Sbjct: 456 VPIAILPGIVGELYRQFAVTLSAAVILSSINALTLSPALCALLLKRRTLSSTGVFGAINR 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L         +  R     +  + ++  +      G           +        + L
Sbjct: 516 GLDSARDGYVSLTGRISSRAVFSIVALLLVGFATWWGYTRLPTSFLPEEDQGYFFVSLQL 575

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK--KITEIVPLS 649
               S   +  + D  +Q           ++      ++             +       
Sbjct: 576 PDGASLNRTQTVMDQMYQQVAANDAVEDVIKITGFSLLSGNNSPNAGFAIVMLKPWGQRP 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            I             +    I+ V
Sbjct: 636 HIDQVLANIQANLAAIPSAMIMAV 659



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 66/190 (34%), Gaps = 13/190 (6%)

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                  +         +   +++   +  ++ +    L  +     W   L  I +++  
Sbjct: 845  PQGYSYSWSGMSWQEQQTGGQVVFIYLAALVFAY---LFLVAQYESWSIPLVVILSVVFA 901

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRKNMKLYTTSISFRDLI 761
            +   +   +  G   ++ A   ++ LIG +  + +++  + + R+         +     
Sbjct: 902  VGGAVAGLSAMGFANDVYAQIGLVLLIGLAAKNAILIVEFSKARRE-----EGATIAQAA 956

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAP 818
                 +     + T+++  + V+P+    G   +      I +  G+++A +  IF    
Sbjct: 957  QDGAKQRFRAVMMTAISFILGVMPLVFASGAGAMSRQIIGITVFGGMLMATAVGIFFIPA 1016

Query: 819  ILLFIYDWRA 828
            + L I   R 
Sbjct: 1017 LYLHIQRLRE 1026



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 94/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALEVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P                  + +  + + ++ I +L  +++             T+ +
Sbjct: 316 ASFPPDLTYEINYDSTLPVTATLHEIALSLTLTLIVVLAVVYLFLQSMRATFIVALTIPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +     +++  +   
Sbjct: 376 SLLGTFAVLYVFGYSANTLSLFAIILALTIVVDDAIVVVENV-ERLLSIDPNLTSAEATK 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++++  G  + T++      +P+A+     G +   FA+ ++  +++++ +++ ++  +
Sbjct: 435 KAMSQIAGPIIATTLVLMAVFVPIAILPGIVGELYRQFAVTLSAAVILSSINALTLSPAL 494

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 495 CALLLKRR 502


>gi|260550428|ref|ZP_05824639.1| cation/multidrug efflux pump [Acinetobacter sp. RUH2624]
 gi|30348887|gb|AAN28930.1| putative RND family efflux protein P114 [Acinetobacter baumannii]
 gi|260406534|gb|EEX00016.1| cation/multidrug efflux pump [Acinetobacter sp. RUH2624]
          Length = 1044

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/530 (11%), Positives = 146/530 (27%), Gaps = 41/530 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             ++ ++   I   G             ++R+P+  P               + +  +  
Sbjct: 10  PIFVSVIAITILIFGFFSI-----RAMPVERYPNLAPP-------------SVTVIANYR 51

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG---VFSMRQIQNK-ITLSFADSRFKENIADKVTLF 118
                 ++      L   +K          +        I + F      +    +V   
Sbjct: 52  GASAETVEESVTQILEQQIKGLDNLLYFTSNSESSGTTSIDIHFKIGTDIDKAQLQVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +    ++L    ++  +         +++     +   +  IE S  ++      +   +
Sbjct: 112 INSALNRLPEQVQRQGVNIWKTTGDMLLIVGLYDETGKASNIELSDYMVNHFEQPLSQLQ 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    +P++LR      + +       N        G         
Sbjct: 172 GIGEVDVFGS-SYAMRIWLNPNQLRNYQLMPSDVEQALEDYNTQIAAGSIGAMPSASDQN 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V     +                      +    +     +      +        
Sbjct: 231 IYAKVTAGSRL-------------KTVDDFKSVVVKANVDGSLVYLKDVARVELGAENYE 277

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L          S     +   T          L+         +    N      S
Sbjct: 278 SINTLNGYPSAGLGISLSPDANAIETSGLIKAKIEQLKQHLPTGYKIVYPRDNTPFIEES 337

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV+IV+++ +   +  L+   ++ + +  T  +L L G ++   ++ 
Sbjct: 338 IKQVIITLLEAVVLVVIVMYLFLQNWRATLIPTITVPIVICGTFVVLYLTGMSINTLTLF 397

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IGL VD  I+V E +     +   SV  +           +    +      + +
Sbjct: 398 ALVLAIGLLVDDTIVVVENVERLMHEQHLSVRDACLASMQEITGALIGITLVLTAVFIPM 457

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            FF    G   R F+IT+  ++L+S+  A+ I  A+   +++ +  K   
Sbjct: 458 AFFSGSTGMIYRQFSITLAAAMLLSLLVAMFITPALCAVLLKKQTQKPKW 507



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 99/248 (39%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  +            L        +++  + +++   +++ + +P 
Sbjct: 261 VYLKDVARVELGAENYESINTLNGYPSAGLGISLSPDANAIETSGLIKAKIEQLKQHLPT 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                          E I++ I+ ++ + + ++I +++  + W   L    T+ + I  T
Sbjct: 321 GYKIVYPRDNTPFIEESIKQVIITLLEAVVLVVIVMYLFLQNWRATLIPTITVPIVICGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G+  N   + A++  IG  V+D +VV + +     ++   +S RD    S+ E
Sbjct: 381 FVVLYLTGMSINTLTLFALVLAIGLLVDDTIVVVENV--ERLMHEQHLSVRDACLASMQE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GS       F+I +A  ++++   ++FI   +   + 
Sbjct: 439 ITGALIGITLVLTAVFIPMAFFSGSTGMIYRQFSITLAAAMLLSLLVAMFITPALCAVLL 498

Query: 825 DWRAKNAR 832
             + +  +
Sbjct: 499 KKQTQKPK 506



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 7/141 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            IIS + + + +   ++ W   L  +  L L IT TL F  +F +  ++    A+LT IG 
Sbjct: 871  IISILFIFLCLAALYESWKVPLIILLGLPLGITGTLVFAQIFSLPNDVYFQIALLTGIGL 930

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            S  + +++ +      K       +     +++   L   + TS+A    V+P+ V    
Sbjct: 931  SCKNAILIVEFA---TKAIKQGKGYVTAACEALALRLRPILMTSLAFGAGVIPLVVATGA 987

Query: 790  GGSVIGSFAIPMAFGIVVAAS 810
            G        + +   +V+   
Sbjct: 988  GAVSRHEIGMSVFGSVVIGTL 1008


>gi|320104474|ref|YP_004180065.1| acriflavin resistance protein [Isosphaera pallida ATCC 43644]
 gi|319751756|gb|ADV63516.1| acriflavin resistance protein [Isosphaera pallida ATCC 43644]
          Length = 1121

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/517 (11%), Positives = 162/517 (31%), Gaps = 32/517 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +   +G L        +  +D FP+                    L   
Sbjct: 9   KRPVFTWVLMMIPVVLGSLS-----YLELGVDLFPNVDFPVC---------AVVTTLPNA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +++ + +           +  + +T+ F  S+  +    +V   +  
Sbjct: 55  SVEEIESTVTKPIEDVINQISGIDELRSQSLEGTSIVTVQFDLSKPLDVGVQEVRDKVGI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    +  ++   +  EI I+    +         E +    RQ  +++       
Sbjct: 115 VVNQLPEGTETPVVSRFSTDEIPIMTIAVS---GRRDLREVTEIARRQIKERLETVSGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S   +  +    D  +L     +  ++       N    G         D    + 
Sbjct: 172 TVGLSGGKVRAMNIVIDADKLDAYGLSIEEVRQALARQNVETPGGRI------DQGEREL 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           ++     +            +   +   +        +              L V  +G 
Sbjct: 226 VLRTLGRLETEQEFNDLIVVNRGGYPVKIRDLGYAEDSN-----EEVRTLARLEVFENGI 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A          +A  +     +        ++A         +          S   
Sbjct: 281 SQGAKNAVSLTIQKQAGSNVVAVADEIFKRLEKIKASLPDDIEIAITRDQSRFVRKSIEE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    + A LV   +++ +   +  ++A  ++  ++I T A + ++G TL   +I G++
Sbjct: 341 VQFHMLLAAILVSGTIYLFIRDWRTTVIASLAVPTSIIPTFAFMYVMGFTLNNITILGLI 400

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ +D  I+V+E I           + +  MG       +  ++++ ++  + + F 
Sbjct: 401 LAIGIVIDDAIVVHENIFRHMEEHGLDGYEAARMGTREIALPVMATSLSLIVIFLPIGFM 460

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G   G     F +T+  ++ +S+F + ++   +    
Sbjct: 461 GGIIGKFFSSFGLTVAFAVAMSLFVSFTLTPMLCSRF 497



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 78/234 (33%), Gaps = 6/234 (2%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               VR+        +   Q      +  ++ Q           + + ++K    +    
Sbjct: 263 SNEEVRTLARLEVFENGISQGAKNAVSLTIQKQAGSNVVAVADEIFKRLEKIKASLPDDI 322

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I  T      + + +       ++ + +           W   + A   +   I  T  
Sbjct: 323 EIAITRDQSRFVRKSIEEVQFHMLLAAILVSGTIYLFIRDWRTTVIASLAVPTSIIPTFA 382

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  + G   N   +  ++  IG  ++D +VV++ +     +    +   +       E  
Sbjct: 383 FMYVMGFTLNNITILGLILAIGIVIDDAIVVHENIF--RHMEEHGLDGYEAARMGTREIA 440

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
              + TS++  +  LP+   GG +     SF + +AF + ++   S F   P+L
Sbjct: 441 LPVMATSLSLIVIFLPIGFMGGIIGKFFSSFGLTVAFAVAMSLFVS-FTLTPML 493



 Score = 41.6 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 57/146 (39%), Gaps = 7/146 (4%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL R   +   +S   M + +  +F+ W   +  + +L + +   L    LF    +L 
Sbjct: 876  AELFRYFAIAFFLSVTFMYLILAAQFESWSQPVAILMSLPVTVPFGLLSMILFQTPMDLY 935

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            A+  +  L+G    + ++  D      +     ++    I ++ +  L   + T+     
Sbjct: 936  AMFGLFMLVGIVKKNGILQID---ATNQFRAAGMNRHQAILEANHTRLRPILMTTFMLVA 992

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFG 804
            +++P+A+    G     S A  +  G
Sbjct: 993  AMIPLALGQGPGSGSRASMAKVIIGG 1018


>gi|186475414|ref|YP_001856884.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           phymatum STM815]
 gi|184191873|gb|ACC69838.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phymatum STM815]
          Length = 1089

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/682 (10%), Positives = 171/682 (25%), Gaps = 48/682 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L          ++P   P               + +    
Sbjct: 10  RPIFASVISIVITLGGALTML-----ALPTAQYPDITPP-------------QITISATY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   +        +   S       I   F      E     V  
Sbjct: 52  PGASADVVANNVAAPIEQQVNGADNMIYMSSSSSSTGNLTINAYFQIGTNPELAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L        +    + +  +++           A   +       +D +   
Sbjct: 112 RVNLALPQLPQSVTNQGVQVQKKSQAFMMVIAIYSPTERYDATYIANYANVYVLDALKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ QL  T A +       N        G     +  
Sbjct: 172 PGANQSSIFGTPDYAMRIWLRPDRMAQLGITAADVQRAVANQNQQFAVGRLGQSPTGNPV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V     ++              T    + I     GA                  
Sbjct: 232 EQSFAVTTTGRLT------------EPTQFENIIIRAQSGGAAIVRLKDIGRAELGQKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +      A ++          +          
Sbjct: 280 SIRSRFQGKPATVIAVYQQPGANALDVSKQVRATLAEMKKSFPEGIDYEIAMDTTEFTRA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV+IV+F+ +   +  L+   ++ ++++ T   +  LG ++ + ++
Sbjct: 340 SISDVVHTFFEAVVLVVIVVFVFLQSLRATLIPVLAVPVSIVGTFMGMEALGFSINMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +             +           +    +      V 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMTVHKLDPKTAAKQAMDEVAGPVVAIVLVLCAVFVP 459

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FAIT+ +S++IS   A+++  A+   +++    +            
Sbjct: 460 VAFLGGITGQMYKQFAITIAISVVISGVVALTLSPALAALLLKPGHHEKKGFFRWFDN-- 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  QF R          L     +  L       G+       +      P D   
Sbjct: 518 -------QFARMTAGYTRAVRLVIRRFVIALLLFVGMIGLAVLMMRDIPTAFLPPEDQGY 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +       +       ++     ++     S+       ++  +         +  
Sbjct: 571 LLGAVIMPDAASLDRTGKVSDRISEYFMKQPAVGSITTVDGFSILDSQNKNNSSTFFVGF 630

Query: 654 TEIVGPKISRELIRKGIVGVII 675
                   S  +  +    V++
Sbjct: 631 RSFEERYRSANIRTQNARAVLV 652



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  +  + + I  T       G   N+  +  ++  IG  V+D +VV + +    
Sbjct: 365 SLRATLIPVLAVPVSIVGTFMGMEALGFSINMLTLFGMVLAIGIVVDDAIVVIENV--ER 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +  +    ++++E  G  V   +      +P+A  G   G +   FAI +A  +
Sbjct: 423 NMTVHKLDPKTAAKQAMDEVAGPVVAIVLVLCAVFVPVAFLGGITGQMYKQFAITIAISV 482

Query: 806 VVA 808
           V++
Sbjct: 483 VIS 485



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 68/194 (35%), Gaps = 9/194 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFA 693
             V   + E+              +        G  G++     +++++ +     KW   
Sbjct: 841  QVISALEELAASMPSDYGVAWSGEAFEAKQSGGTSGLVFVFGLIMVFLILAAQYEKWSLP 900

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             G +  +   +   L    L G+  ++     +  L+  +  + +++++     +    +
Sbjct: 901  FGVLMAVPFALFGALLAILLRGLNNDVYFQIGLTMLVALAAKNAILIFEFA---VLNRES 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAAS 810
              S  D    +  E L   V TS+A  +  +P+A+  G+      S    +  G++ A +
Sbjct: 958  GKSVFDATMTAAEERLRPIVMTSLAFILGCVPLAIATGASANSRHSIGTGVIGGMLGATA 1017

Query: 811  SSIFIAAPILLFIY 824
             ++F        + 
Sbjct: 1018 IAVFFIPMFFYVLE 1031


>gi|73538164|ref|YP_298531.1| hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134]
 gi|72121501|gb|AAZ63687.1| Hydrophobe/amphiphile efflux-1 HAE1 [Ralstonia eutropha JMP134]
          Length = 1063

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/692 (9%), Positives = 179/692 (25%), Gaps = 47/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  IG +        +  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLIFLIGAISMF-----KLPISEYPEVVPPSVV---------VRAQFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             +  +T++F      +     V   +  
Sbjct: 56  PKVIAETVATPLEEQINGVEDMLYMNSQANSDGSLTLTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AEPRLPEDVRRLGITTVKSSPDLTMVVHLVSPNDRYDMTYLRNYALINVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    +P ++ +   + + +       N      + G          Q 
Sbjct: 176 QVQMFGSGDYSMRVWLNPEKIAERNLSASDVVKAIREQNVQVAAGVIGQSPTLPGTDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      I    +      
Sbjct: 236 SVNAQGRL-------------QTVEEFGDIIVKTSSDGAVTYLKDIARIELGASEYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 283 LLDNKSAVAIPIFQAPGSNAIQISNDVRKTMEELKQNMPEGVDYSIVYDPTQFVRHSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T  L+   G ++   S+ G+V
Sbjct: 343 VVHTLFEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFGLMHAFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEEGLSPKEATYKAMREVSGPIIAIALTLIAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFII--RYKKMKSIDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS F ++++  A+   ++         +             
Sbjct: 463 GLTGQFYKQFALTISISTIISAFNSLTLSPALSALLLRGHDAPKDWLTRGMDKVLGGFFA 522

Query: 537 CIAIQFMR------------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                F R             R  G    +   +          +  G       Q  V 
Sbjct: 523 RFNRFFGRSSDKYGRGVKGVIRRKGSVFGVYAVMLLATWGIFQMVPKGFVPAQDKQYLVS 582

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +  D + +    + ++          G ++ +                  +       
Sbjct: 583 FAKLPDGATLDRTEDVIRRMSEIALKHPGVESAVAFPGLSINGFTNSPSAGIVFVTLDPF 642

Query: 645 IVPLSTIQNTEIVGPKISRE--LIRKGIVGVI 674
                   +   +   ++++   I+   + V 
Sbjct: 643 EKRKGKELSGGAIAADLNKQYGSIQDAFIAVF 674



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    L   + N+      + L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSLLAAMTGVWLTRGDNNIFTQIGFIVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS A  + V+P+ V    G  +  +  + +  G+
Sbjct: 960  -LEHHGRTVVQAAIEASRLRLRPILMTSFAFIMGVVPLVVSTGAGSEMRHAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +     +  R
Sbjct: 1019 LGVTFFGLFLTPVFYVALRLLATRKQR 1045



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 83/233 (35%), Gaps = 17/233 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     I      G     +    +      +  + E V   I 
Sbjct: 270 RIELGASEYALRSLLDNKSAVAIPIFQAPGSNAIQISNDVRKTMEELKQNMPEGVDYSIV 329

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   +    +V ++               W  ++  +  + + 
Sbjct: 330 YDPTQFVRHSIEAVVHTLFEAIALVVLVVILFLQT-----------WRASIIPLLAVPVS 378

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T G    FG   N  ++  ++  IG  V+D +VV + + +N++     +S ++   K
Sbjct: 379 IVGTFGLMHAFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEE---GLSPKEATYK 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
           ++ E  G  +  ++      +P+A      G     FA+ ++   +++A +S+
Sbjct: 436 AMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTIISAFNSL 488


>gi|28198113|ref|NP_778427.1| preprotein translocase subunit SecF [Xylella fastidiosa Temecula1]
 gi|182680741|ref|YP_001828901.1| preprotein translocase subunit SecF [Xylella fastidiosa M23]
 gi|28056173|gb|AAO28076.1| protein-export membrane protein SecF [Xylella fastidiosa Temecula1]
 gi|182630851|gb|ACB91627.1| protein-export membrane protein SecF [Xylella fastidiosa M23]
 gi|307579205|gb|ADN63174.1| preprotein translocase subunit SecF [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 321

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 148/275 (53%), Gaps = 4/275 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIP+   I FMR R   + +  +    S+ ++   G NY ++F GG  +     +PVD 
Sbjct: 7   HLIPNDTKIDFMRWRKPTLSLMSILFAISVLVVVFKGFNYALEFTGGTLVRTQFAKPVDA 66

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQY--QPGDSVAQTRVLEMVKKKITEIVPLS 649
             VR  LE   +G+   Q+  G    L+RLQ   +  +        E V+K IT     +
Sbjct: 67  DQVRQRLEVGGLGNAQVQSVGGGNELLIRLQPYGEHNNDDVAKNAAEAVRKVITLPDNPA 126

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           T+Q  E VGP++ ++L   G+   I   +  LIYI  RF+W FA+ A  T   D+  T+ 
Sbjct: 127 TVQPGEFVGPQVGKDLAMNGVYATIFMLLGFLIYIGFRFEWKFAVAASLTAFFDLILTIA 186

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           + +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   +++++SIN+TL
Sbjct: 187 YMSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSL--RVEPLEVLNRSINQTL 244

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            R+V T++  F+S   + ++GG  +   A     G
Sbjct: 245 SRTVITAVMFFLSAFALYLYGGRSMEGLAETHMAG 279


>gi|296102478|ref|YP_003612624.1| RND family multidrug efflux permease protein OqxB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295056937|gb|ADF61675.1| RND family multidrug efflux permease protein OqxB [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 1050

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/505 (11%), Positives = 134/505 (26%), Gaps = 32/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++        +  D++     
Sbjct: 114 SQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPGGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPKESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELSTRFPEDMKWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVVMVVILFLQTWRASIIPLIAVPVSVVGTFSVLYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 FGGGAVRGFAITMGLSILISMFTAI 504
             G   + +        + ++ +AI
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAI 485



 Score = 47.4 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 54/142 (38%), Gaps = 8/142 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDW 826
            ++      +F+     + +  +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKF 1037



 Score = 45.5 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 86/266 (32%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPKESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+             P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMAELSTRFPEDMKWAA-PYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                   + +++ I     W  ++  +  + + +  T     L G   N  ++  ++  
Sbjct: 345 QTLLEAVVLVVMVVILFLQTWRASIIPLIAVPVSVVGTFSVLYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487


>gi|34557293|ref|NP_907108.1| multidrug ABC transporter [Wolinella succinogenes DSM 1740]
 gi|34483009|emb|CAE10008.1| MULTIDRUG EFFLUX TRANSPORTER [Wolinella succinogenes]
          Length = 1044

 Score =  170 bits (429), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/522 (12%), Positives = 149/522 (28%), Gaps = 42/522 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L       P+  + +FP   P               + +    
Sbjct: 8   RPNFAWVIAIFISLAGILSI-----PKLPIAQFPVVAPP-------------QISISASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + +  +  +   +            S     +++T++F      +     +  
Sbjct: 50  PGASAKMVAETITSIIEEEINGVKNLLYYESSSSSDGSSEVTVTFKSGTDSDLAQVDIQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN-NIDQVISHAIEQSMEIIRQRIDQIGI 176
            L+   ++L        +         +++      +      +  S   +R   ++I  
Sbjct: 110 RLKKAEARLPQVVINQGVQVEQANADFLMMYALNYKEGASGDLVTLSDYAVRNINNEIRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP +L     + + ++      N        G       
Sbjct: 170 LPGVGRVQFFSS-EAAMRVWIDPIKLLGYGLSVSDVTQAIKAQNLQVSAGALGRNPTDGV 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              + ++  +  +                 +    I    +            +      
Sbjct: 229 QEIEAMLNVRGNLENTE-------------EFEKIILKANLDGSTVSLSDVARLEIGNLD 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L       A        +   T        A L AG        +         
Sbjct: 276 YGFSTSLNGKEAIAAAIQLAPGANAIKTAGLVKEKMAQLSAGFPEGIEYSIPYDTSRFVE 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV  V+ + +   ++ L+    + + ++ TLA+++ LG ++ + +
Sbjct: 336 IAIQKVIQTLLEAIVLVFFVILLFLQNLRYTLIPSIVVPVCLLGTLAVMNALGFSVNMMT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +      +  S   +      +    I           +
Sbjct: 396 MFGMVLAIGILVDDAIVVVENVERIMREERISPKEATLKAMKQVSGAIVGITSVLTAVFL 455

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            L F  G      R F++++ +SIL S F A+++  A+   I
Sbjct: 456 PLGFMEGSVGVIYRQFSLSLAVSILFSGFLALTLTPALCATI 497



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 85/236 (36%), Gaps = 8/236 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V            S      E            +++    +++    +++   P 
Sbjct: 261 VSLSDVARLEIGNLDYGFSTSLNGKEAIAAAIQLAPGANAIKTAGLVKEKMAQLSAGFPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I+K I  ++ + + +   I +  +   + L     + + +  T
Sbjct: 321 GIEYSIPYDTSRFVEIAIQKVIQTLLEAIVLVFFVILLFLQNLRYTLIPSIVVPVCLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L      G   N+  +  ++  IG  V+D +VV + +     +    IS ++   K++ +
Sbjct: 381 LAVMNALGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERIMREERISPKEATLKAMKQ 438

Query: 768 TLGRSV-YTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  TS+      LP+    GSV      F++ +A  I+ +   ++ +   +
Sbjct: 439 VSGAIVGITSVLT-AVFLPLGFMEGSVGVIYRQFSLSLAVSILFSGFLALTLTPAL 493



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 57/149 (38%), Gaps = 10/149 (6%)

Query: 689  KWYFALGAITTLILDITKTLGFFA--LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             W         LI+ +       A  + G+  ++     ++T+IG +  + +++ +  ++
Sbjct: 892  SWLLPFS--VMLIVPVGAFGAVLAAWIGGMSNDVYFKVGLVTIIGLAAKNAILIVEFAKE 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                     S  +   K+ +      V TSMA  + VLP+ +    G +   S    +  
Sbjct: 950  IRAE---GHSVVESALKAASLRFRPIVMTSMAFILGVLPLVLAQGAGAASQKSIGTGVMG 1006

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G++ A    + +     ++++      A+
Sbjct: 1007 GMLSATLLGVLLVPIFYVWVFSLAEPRAK 1035


>gi|190576267|ref|YP_001974112.1| putative multidrug efflux protein [Stenotrophomonas maltophilia
           K279a]
 gi|190014189|emb|CAQ47833.1| putative multidrug efflux protein [Stenotrophomonas maltophilia
           K279a]
          Length = 1049

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/552 (11%), Positives = 146/552 (26%), Gaps = 33/552 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +      +     +    +DR+P   P                      
Sbjct: 8   RPIFAWVIAIAVS-----LLGLLAILILPVDRYPQIAPPTIT---------IRATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++ +  L        +     + ++ L FA     +    +V   LQ 
Sbjct: 54  SQTVENAVTQVIEQSQQSLDHLMYMTSTSASDGSAQVNLVFATGTNPDTAQVQVQNQLQA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    ++N L  T        +     +       + +  +  +  DQI       
Sbjct: 114 AMATLPQAVQQNGLTITKSSGSIFEVLSFTSEDGSMDNFDVANFMEARIDDQISRVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++RQ     + +       N        G +          
Sbjct: 174 NIQPIG-QEYAMRIWLDPEKMRQYALMPSDIETALQAQNTDVSAGELGGQPALKGQQLDA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +   +             IG          
Sbjct: 233 TVTARSRL-------------HTPEQFAQVVLKADANGSVVRLGDVATIGLGPESYDSIS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +     +        L+          V          S   
Sbjct: 280 TFNGKPSASLGIELNAGANAIAVSKAIDARLQQLQKYWPHGYTAHVAFTTTPFVTISLKE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VVITLIEAIILVVLVMYLFLQNWRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +         +   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTFEGLAPKPATLKAMGQITGALVGIVLVLTAVFLPMAFF 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F++T+  ++++S+  A++I  A+   I+                  +   
Sbjct: 460 SGVTGVIYRQFSVTIAAAMILSVLVAMTITPALCGSILHQIPKGGHPHGDHGGEPSLLGK 519

Query: 538 IAIQFMRARFWG 549
             I F       
Sbjct: 520 FFIWFNHRFERT 531



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 89/220 (40%), Gaps = 6/220 (2%)

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            D            L        +++A ++ ++   +++ +  P     +          
Sbjct: 275 YDSISTFNGKPSASLGIELNAGANAIAVSKAIDARLQQLQKYWPHGYTAHVAFTTTPFVT 334

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             +++ ++ +I + I +++ +++  + W   L     + + +  T G  A FG   N   
Sbjct: 335 ISLKEVVITLIEAIILVVLVMYLFLQNWRATLIPTIAVPVVLLGTFGVLAAFGYSINTLT 394

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A++  IG  V+D +VV + +     +    ++ +    K++ +  G  V   +     
Sbjct: 395 MFALVLAIGLLVDDAIVVVENV--ERVMTFEGLAPKPATLKAMGQITGALVGIVLVLTAV 452

Query: 783 VLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
            LPMA + G   VI   F++ +A  ++++   ++ I   +
Sbjct: 453 FLPMAFFSGVTGVIYRQFSVTIAAAMILSVLVAMTITPAL 492



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 82/263 (31%), Gaps = 18/263 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +   A + V LS + S   +     +   N         +         
Sbjct: 782  RMQPQDIERWSVRNQAGQMVPLSSLISTHWTSAPAALQRYNGISAMEITGQPAPGVSSGE 841

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +            +    +         ++        IS + + + +   ++
Sbjct: 842  AMAEIARLADTLPEGFSHAWSDMAYQEQLSGNQAPMLY------AISLLFVFLCLAALYE 895

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRK 746
             W      +  + + +   +    L G+  ++     +LT IG +  + +++  + R+ +
Sbjct: 896  SWAVPFAVMLAVPVGVFGAVLMMNLRGLNNDVYFQVGLLTTIGLAAKNGILIVEFARILE 955

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                       RD I +++   L   V TS+A  + VLP+      G +   S    +A 
Sbjct: 956  -----QQGRDTRDAILQAVYLRLRPIVMTSLAFLMGVLPLVFATGAGSAARRSLGTGVAG 1010

Query: 804  GIVVAASSSIFIAAPILLFIYDW 826
            G V +    +F   P+   +   
Sbjct: 1011 GTVASMVLGMFFV-PLFYLLVRR 1032


>gi|15598718|ref|NP_252212.1| Resistance-Nodulation-Cell Division (RND) efflux transporter
           [Pseudomonas aeruginosa PAO1]
 gi|9949670|gb|AAG06910.1|AE004772_8 probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa PAO1]
          Length = 1053

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/523 (12%), Positives = 151/523 (28%), Gaps = 36/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              + ++L  ++   G++        Q  L  +P+  P               +      
Sbjct: 10  RPIFAIVLSVLMMIGGIVS-----FFQLPLSEYPAVTPPT-----------VQVTTAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFL 119
              D +   +    ++  + ++               I T++F      +    +V   +
Sbjct: 54  ANPDVIAQTVATPLEQAITGVEGMLYMSSQSATDGRMILTITFDQHIDPDMAQIQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V S+L  + ++  +VT       +++      +     +  S     Q  D++     
Sbjct: 114 SRVLSRLPDEVQRQGVVTQKTSPDILMVVHLLSPEQRYDPLYISNYAYLQVRDELLRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               +        +    DP  +     T  ++       N        G      +   
Sbjct: 174 ISDVVVWGAGEYSMRLWLDPDLIAARGLTAGEVIAAVREQNVQVAAGAVGQAP-DSTAAF 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V     +S                +    I       +         I         
Sbjct: 233 QVTVNTLGRLSDEE-------------QFGDIIVRTGADGQVTRLRDVARIEMGGDAYAL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +   T E      A L           +          S 
Sbjct: 280 RSLLDGEPAVALQIIQSPGANALDTAEAVRATVARLEGNFPAGLSARIAYDPTVFVRASL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  L+   ++ ++++ T A++ L+G +L   S+ G
Sbjct: 340 QTVATTLLEAILLVVVVVVLFLRSWRASLIPLMAVPVSLVGTFAVMHLMGFSLNTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV--- 476
           +VL IG+ VD  I+V E +       +    +           I           +    
Sbjct: 400 LVLSIGIVVDDAIVVVENVERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAF 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           L    G   R FA+T+ +S ++S   ++++  A+   ++R + 
Sbjct: 460 LSGLQGEFYRQFALTIAISTILSALNSLTLSPALAGLLLRPRP 502



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 6/166 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +  +   +A LI       W   L  +  + + +   +    L G + N+     ++ L
Sbjct: 877  FIFPLCVLLAYLILAAQYNSWLLPLAVLLIVPMCLLSAIAGVWLVGGDNNVFVQIGLVVL 936

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G +  + +++ +  R    L        + + ++    L   + TS+A    V+P+ + 
Sbjct: 937  VGLAAKNAILIVEFAR---TLEAEGARALEAVVEACRLRLRPILMTSLAFIAGVVPLVMA 993

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +  +  + +  G++      +F+     + +    A+  R
Sbjct: 994  SGAGAEMRQAMGVAVFAGMLGVTLFGLFLTPVFYVLVRALAARLER 1039



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  +L  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + +   
Sbjct: 362 RSWRASLIPLMAVPVSLVGTFAVMHLMGFSLNTLSLFGLVLSIGIVVDDAIVVVENV--- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +             ++++E  G  +  TS   A FI    ++   G     FA+     
Sbjct: 419 ERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAFLSGLQGEFYRQFALT--IA 476

Query: 805 I--VVAASSSIFIAAPILLFIYDWR 827
           I  +++A +S+ ++  +   +   R
Sbjct: 477 ISTILSALNSLTLSPALAGLLLRPR 501


>gi|78185899|ref|YP_373942.1| preprotein translocase subunit SecD [Chlorobium luteolum DSM 273]
 gi|78165801|gb|ABB22899.1| SecD export membrane protein [Chlorobium luteolum DSM 273]
          Length = 595

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 152/598 (25%), Positives = 272/598 (45%), Gaps = 78/598 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-------------------MPK 41
           M+N  + ++L +++  + L    P +   S   +  S                      +
Sbjct: 4   MKNKRFNLLLIAVVTLVALWSLWPTWRDYSFSRQLSSLSSQQDSLNYTLSHRNEIEDARQ 63

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQM----------------------YSDELRS 79
             + LGLDL+GG HLV+EVD+ D  +                             D L +
Sbjct: 64  KSLKLGLDLKGGMHLVMEVDQVDLFSEKAWNRDARFDSLMAAVAQEARTSDADVVDLLTA 123

Query: 80  FLKKEGIGVFS----MRQIQNKIT--LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             KK+ I +      +R   ++I   L            + +   +            + 
Sbjct: 124 AFKKDNIRLSRYFYDIRNTDSEIQGKLRNEAGDALVRAREIIRNRIDQY------GVAEP 177

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSM----------EIIRQRIDQIGISESTIQR 183
           ++ T   ++I I L   + +  + + ++ +           + + + +D+I  + +    
Sbjct: 178 MITTQGNRKIIIELPGVSDENRMRNLLKGTAKLEFRLLREPDALIRTLDRINSAMAAGTI 237

Query: 184 LGSHRILIQLPGEQD-----------PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
             +      +    D                + L +                  +   R 
Sbjct: 238 AAASTGKQSISPLYDLVSVSPGGSAVIDARNRDLVSALLRDAAVRDLLPPDSEMLISARP 297

Query: 233 LRDSDGNQY----LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
              +D   Y    LV+   E++G  +  A A F  +  +P V +S +  G  ++  +T  
Sbjct: 298 ETGNDALSYHDLYLVKKTPELTGGVITEAKATFGSQGVQPEVLMSMNSEGTSKWARITGA 357

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           NIGK +A+VLDG V +APV+   IP+G + I+G  ++E A  L  +L+AG+LP  + I+E
Sbjct: 358 NIGKRVAIVLDGAVYSAPVVQSKIPNGNSVINGIQSLEEAKDLEIVLKAGALPAPVRIIE 417

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER VG  LG+D I  G  +++ G   +V+FMI+ Y   GL AD ++ LNV++ L++L+  
Sbjct: 418 ERTVGPSLGADYIRAGFQSMIWGFSAVVIFMIIYYRTAGLAADTALVLNVLIVLSVLAGF 477

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            A+L+LP IAGIVL +G+AVD+N+L+ ERIREE    ++V  ++  G+ RA+S+I DS++
Sbjct: 478 NASLSLPGIAGIVLTMGMAVDANVLIYERIREEIADGRTVTAAVTQGYDRAFSSILDSHV 537

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           T L A  +L+ +G G ++GFA+T+ +    S+FT+I + R +  F++   KM +    
Sbjct: 538 TTLAAAFLLYTYGIGPIQGFAVTLMIGTAASLFTSIVVTREIFQFLLSRNKMTAKSFG 595



 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 77/175 (44%), Gaps = 4/175 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR G   +I    A++I++ I ++    L A T L+L++   L   A F   
Sbjct: 422 GPSLGADYIRAGFQSMIWGFSAVVIFMIIYYR-TAGLAADTALVLNVLIVLSVLAGFNAS 480

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            +L  +A ++  +G +V+  V++Y+R+R+ +       +    + +  +      + + +
Sbjct: 481 LSLPGIAGIVLTMGMAVDANVLIYERIREEIAD---GRTVTAAVTQGYDRAFSSILDSHV 537

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               +   +  +G   I  FA+ +  G   +  +SI +   I  F+       A+
Sbjct: 538 TTLAAAFLLYTYGIGPIQGFAVTLMIGTAASLFTSIVVTREIFQFLLSRNKMTAK 592


>gi|119355883|ref|YP_910527.1| preprotein translocase subunit SecD [Chlorobium phaeobacteroides
           DSM 266]
 gi|119353232|gb|ABL64103.1| protein-export membrane protein SecD [Chlorobium phaeobacteroides
           DSM 266]
          Length = 619

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 122/472 (25%), Positives = 226/472 (47%), Gaps = 8/472 (1%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
           +      L    + +R+ + + G+    +    ++ I +  A    +  + + +    + 
Sbjct: 148 EKESEDALLRAKEIIRNRIDQYGVAEPVITTQGSRRIIIELAGVSDENRVRNLLKGTAKL 207

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L         +      +     Q  +        + +          +  + S  
Sbjct: 208 EFKLLRDPDMLLRALDRVNSALVQASVQKPVVPDSLAVKDSAATASPAVAPPLDATASKQ 267

Query: 182 QRL----GSHRILIQLPGEQDPSRLRQLLGTT---AKMSFHKVLPNNSKKGFMFGVRFLR 234
            +          ++       P + R+ + T    A +       +         V    
Sbjct: 268 AKTAGPLYDVIGVLPNGTVFTPEQSREFVLTLLQRADVQALLPQDSELLLSAKPEVGEKG 327

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           +     YLV+   E++G  +  A A F  +  +P V +S +  G  ++  +T  NIGK +
Sbjct: 328 EKYYPIYLVKKTAELTGGVITEAKATFGSEGVQPEVMMSMNSDGTGKWARITGANIGKRI 387

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A+VLDG V +APV+   IP+G + I+G  ++E A  L  +L+AG+LP  + I+EER VG 
Sbjct: 388 AIVLDGAVYSAPVVQSKIPNGNSVINGIESLEEAKDLEIVLKAGALPAPVRIMEERTVGP 447

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG+D I  G  +++ G   + +FM+V Y K G+ AD ++ LN+++ L++L+   A+L+L
Sbjct: 448 SLGADYIRAGMLSLLWGFCAVSIFMLVYYRKAGIAADIALLLNILIVLSVLAGFNASLSL 507

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGIVL +G+AVD+N+L+ ERIREE  + + +  ++ +G+ RA+S+I DS++T L A 
Sbjct: 508 PGIAGIVLTMGMAVDANVLIYERIREELDEGKPLKSAITLGYDRAFSSILDSHVTTLSAA 567

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +L+ +G G ++GFA+T+ +    S+FTAI + R +   ++    M      
Sbjct: 568 FLLYTYGIGPIQGFALTLMIGTAASLFTAIVVTREIFTILLGRNMMTEKSFG 619



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 80/205 (39%), Gaps = 4/205 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  K   +     I     VGP +  + IR G++ ++    A+ I++ + 
Sbjct: 416 ESLEEAKDLEIVLKAGALPAPVRIMEERTVGPSLGADYIRAGMLSLLWGFCAVSIFMLVY 475

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++    + A   L+L+I   L   A F    +L  +A ++  +G +V+  V++Y+R+R+ 
Sbjct: 476 YR-KAGIAADIALLLNILIVLSVLAGFNASLSLPGIAGIVLTMGMAVDANVLIYERIREE 534

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +         +  I    +      + + +    +   +  +G   I  FA+ +  G   
Sbjct: 535 LDE---GKPLKSAITLGYDRAFSSILDSHVTTLSAAFLLYTYGIGPIQGFALTLMIGTAA 591

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++I +   I   +        +
Sbjct: 592 SLFTAIVVTREIFTILLGRNMMTEK 616



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 55/241 (22%), Positives = 90/241 (37%), Gaps = 43/241 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N  + + L   +  I L    P +   S+  +                          
Sbjct: 1   MKNKQFPLFLLLAVTAISLWSLWPTWRDYSLTKQIERFSSSEDSLKFSLAHRDEIENARR 60

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             + LGLDL+GG HLV+EVD+ D                + K             ++   
Sbjct: 61  KSLKLGLDLKGGMHLVMEVDQIDLFMQKAWNKDARFFELMDKVKQK---SVTSDARVIDL 117

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
             +   KENI   ++ +   + +       K                   +++    A+ 
Sbjct: 118 IVNEFTKENIR--LSRYFYDIRNSDKEIVGK-------------------LEKESEDALL 156

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
           ++ EIIR RIDQ G++E  I   GS RI+I+L G  D +R+R LL  TAK+ F  +   +
Sbjct: 157 RAKEIIRNRIDQYGVAEPVITTQGSRRIIIELAGVSDENRVRNLLKGTAKLEFKLLRDPD 216

Query: 222 S 222
            
Sbjct: 217 M 217


>gi|116051521|ref|YP_789643.1| putative RND efflux transporter [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586742|gb|ABJ12757.1| putative RND efflux transporter [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1053

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/523 (12%), Positives = 151/523 (28%), Gaps = 36/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              + ++L  ++   G++        Q  L  +P+  P               +      
Sbjct: 10  RPIFAIVLSVLMMIGGIVS-----FFQLPLSEYPAVTPPT-----------VQVTTAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFL 119
              D +   +    ++  + ++               I T++F      +    +V   +
Sbjct: 54  ANPDVIAQTVATPLEQAITGVEGMLYMSSQSATDGRMILTITFDQHIDPDMAQIQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V S+L  + ++  +VT       +++      +     +  S     Q  D++     
Sbjct: 114 SRVLSRLPDEVQRQGVVTQKTSPDILMVVHLLSPEQRYDPLYISNYAYLQVRDELLRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               +        +    DP  +     T  ++       N        G      +   
Sbjct: 174 ISDVVVWGAGEYSMRLWLDPDLIAARGLTAGEVIAAVREQNVQVAAGAVGQAP-DSTAAF 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V     +S                +    I       +         I         
Sbjct: 233 QVTVNTLGRLSDEE-------------QFGDIIVRTGADGQVTRLRDVARIEMGGDAYAL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +   T E      A L           +          S 
Sbjct: 280 RSLLDGEPAVALQIVQSPGANALDTAEAVRATVARLEGNFPAGLSARIAYDPTVFVRASL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  L+   ++ ++++ T A++ L+G +L   S+ G
Sbjct: 340 QTVATTLLEAILLVVVVVVLFLRSWRASLIPLMAVPVSLVGTFAIMHLMGFSLNTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV--- 476
           +VL IG+ VD  I+V E +       +    +           I           +    
Sbjct: 400 LVLSIGIVVDDAIVVVENVERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAF 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           L    G   R FA+T+ +S ++S   ++++  A+   ++R + 
Sbjct: 460 LSGLQGEFYRQFALTIAISTILSALNSLTLSPALAGLLLRPRP 502



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 6/166 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +  +   +A LI       W   L  +  + + +   +    L G + N+     ++ L
Sbjct: 877  FIFPLCVLLAYLILAAQYNSWLLPLAVLLIVPMCLLSAIAGVWLVGGDNNVFVQIGLVVL 936

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G +  + +++ +  R    L        + + ++    L   + TS+A    V+P+ + 
Sbjct: 937  VGLAAKNAILIVEFAR---TLEAEGARALEAVVEACRLRLRPILMTSLAFIAGVVPLVMA 993

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +  +  + +  G++      +F+     + +    A+  R
Sbjct: 994  SGAGAEMRQAMGVAVFAGMLGVTLFGLFLTPVFYVLVRALAARLER 1039



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 57/145 (39%), Gaps = 10/145 (6%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  +L  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + +   
Sbjct: 362 RSWRASLIPLMAVPVSLVGTFAIMHLMGFSLNTLSLFGLVLSIGIVVDDAIVVVENV--- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +             ++++E  G  +  TS   A FI    ++   G     FA+     
Sbjct: 419 ERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAFLSGLQGEFYRQFALT--IA 476

Query: 805 I--VVAASSSIFIAAPILLFIYDWR 827
           I  +++A +S+ ++  +   +   R
Sbjct: 477 ISTILSALNSLTLSPALAGLLLRPR 501


>gi|194365396|ref|YP_002028006.1| preprotein translocase subunit SecF [Stenotrophomonas maltophilia
           R551-3]
 gi|194348200|gb|ACF51323.1| protein-export membrane protein SecF [Stenotrophomonas maltophilia
           R551-3]
          Length = 326

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 158/298 (53%), Gaps = 9/298 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            ++P+   I FMR R   + ++I+  + SI ++   G NY +DF GG  +    ++ VD+
Sbjct: 7   HILPNDTKIDFMRWRHVAMVVTIIVFLASISIIGFKGFNYALDFTGGTLIEARFDKAVDV 66

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRL-------QYQPGDSVAQTRVLEMVKKKITE 644
             VR+ LE         Q+  G  + L+RL             +         V K ++ 
Sbjct: 67  EQVRTKLEENGFDGAQVQSVGGNTDLLIRLAPHGEHAPGTGDAAHEDKATAAAVVKALST 126

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
               +T+   E VGP+I ++L   G+   I      LIYI +RF+W FA+ A    + D+
Sbjct: 127 ADNQATVLRNEFVGPQIGKDLAMNGLYATIFMLAGFLIYIAVRFEWKFAVTASIVAMFDL 186

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T+ + +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   +++++S
Sbjct: 187 IVTVAYVSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSL--RVDSMEVLNRS 244

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           IN+TL R+V T++  F+S L + ++GGS +   A     G V+   SSI +A P+L  
Sbjct: 245 INQTLSRTVITAVMFFLSALALYMYGGSSMEGLAETHMIGAVIVVLSSILVAVPMLTI 302


>gi|3769484|gb|AAC64522.1| transmembrane efflux pump protein [Pseudomonas aeruginosa PAO1]
          Length = 1044

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/684 (11%), Positives = 190/684 (27%), Gaps = 44/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G+L           + ++P   P                      
Sbjct: 8   RPVFAWVISLLIVLAGVLAI-----RFLPVAQYPDIAPPVV---------NVSASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          + +  Q  +TL+F      +  A +V   L+ V
Sbjct: 54  AKVVEEAVTAIIEREMNGAPGLLYTKATSQHRQASLTLTFRQGVNADLAAVEVQNRLKIV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +++ +      +   ++           A+E         +  +   E   +
Sbjct: 114 ESRLPESVRRDGIYVEKAADSIQLIVTLTSSSGRYDAMELGEIASSNVLQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP++L  +  + + +       N        G   + DS      
Sbjct: 174 VETWGA-EYAMRIWPDPAKLTSMNLSASDLVNAVRRHNARLTVGDIGNLGVPDSAPISAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+    +                 +                      +    +       
Sbjct: 233 VKVDDTL-------------VTPEQFGEIPLRIRADGGAIRLRDVARVEFGQSEYGFVSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        +           +          S    
Sbjct: 280 VNQMTATGLAVKMAPGSNAVATAKHPRH-PRRVSRYFPEGVSYNIPYDTSAFVEISIRKV 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV  V+++ +   +  L+    + + ++ T  ++  LG ++ + ++ G+VL
Sbjct: 339 VSTLLEAMLLVFAVMYLFMQNFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVL 398

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  S   +      +    I    +  +   V + FF 
Sbjct: 399 AIGILVDDAIIVVENVERLMAEEGLSPHDATVKPMRQISGAIVGITVVLVSVFVPMAFFS 458

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+T+ +SI  S F A+S+  A+   +          +       +   L 
Sbjct: 459 GAVGNIYRQFAVTLAVSIGFSAFLALSLTPALCATLLRPIDADHHEKRGFFGWFNRAFLR 518

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                 + +A    R   W +  +++  + ++  +         + +G   + V+     
Sbjct: 519 LTGRYRNAVAGILARPIRWMLVYTLVIGVVALLFVRLPQAFLPEEDQGDFMIMVMQPEGT 578

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            ++   +N+  ++      +       + V      GD  +   +   +K          
Sbjct: 579 PMAETMANVGDVERYLAEHEPVA--YAYAVGGFSLYGDGTSSAMIFATLKDWSERREASQ 636

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            +        +    L  + +  +
Sbjct: 637 HVGAIVERINQRFAGLPNRTVYAM 660



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 93/268 (34%), Gaps = 6/268 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G I L + A+         + +E  Q         +      + +
Sbjct: 231 ATVKVDDTLVTPEQFGEIPLRIRADGGAIRLRDVARVEFGQSEYGFVSRVNQMTATGLAV 290

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
           +  PG +   T       ++++   P     N            IRK +  ++ + + + 
Sbjct: 291 KMAPGSNAVATAKHPRHPRRVSRYFPEGVSYNIPYDTSAFVEISIRKVVSTLLEAMLLVF 350

Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
             +++  + +   L     + + +  T       G   N+  +  ++  IG  V+D ++V
Sbjct: 351 AVMYLFMQNFRATLIPTLVVPVALLGTFTVMLGLGFSINVLTMFGMVLAIGILVDDAIIV 410

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSF 797
            + +     +    +S  D   K + +  G  V  ++      +PMA + G+V      F
Sbjct: 411 VENV--ERLMAEEGLSPHDATVKPMRQISGAIVGITVVLVSVFVPMAFFSGAVGNIYRQF 468

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYD 825
           A+ +A  I  +A  ++ +   +   +  
Sbjct: 469 AVTLAVSIGFSAFLALSLTPALCATLLR 496



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 89/263 (33%), Gaps = 11/263 (4%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            GID  G + +       V L+       +L    ++  N     N   +         A 
Sbjct: 775  GIDDIGRLHVRNEQGEMVPLATFAKAAWTLGPPQLTRYNGYPSFNLEGQAAPGYSSGEAM 834

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              + ++++     I    + Q+ E              +  + +  I  L    +   W 
Sbjct: 835  QAMEQLMQGLPEGIAHEWSGQSFEERLSGAQAP----ALFALSV-LIVFLALAALYESWS 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I  + L +   L   +L G+  ++     ++T+IG S  + +++ +  +     Y
Sbjct: 890  IPLAVILVVPLGVLGALLGVSLRGLPNDIYFKVGLITIIGLSAKNAILIIEVAKD---HY 946

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S      ++    L   V TS+A    V+P+A+    G     +    +  GIV A
Sbjct: 947  QEGMSLLQATLEAARLRLRPIVMTSLAFGFGVVPLALSSGAGSGAQVAIGTGVLGGIVTA 1006

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F+     L +        
Sbjct: 1007 TVLAVFLVPLFFLVVGRLFRLRK 1029


>gi|37522063|ref|NP_925440.1| AcrB/AcrD/AcrF family protein [Gloeobacter violaceus PCC 7421]
 gi|35213062|dbj|BAC90435.1| AcrB/AcrD/AcrF family protein [Gloeobacter violaceus PCC 7421]
          Length = 1039

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/603 (11%), Positives = 165/603 (27%), Gaps = 42/603 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ ++   G++      + ++     P                   +     
Sbjct: 11  RNPVPTIVLFLVLTVAGIVSFFSLGIDENPNIDVPVVA--------------VTVTQTGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +      + ++    +  T+ F      +   + V   +  
Sbjct: 57  APQELETQVTRKVEDSVAGVGNVEHIISTVNDGVSNTTIRFVLGTNTDRAVNDVRDAVTK 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L     + ++                I      A+E S  +       +       
Sbjct: 117 IRQQLPQGINEPIIQRIDFSGGP--FISYTISADKRSAVELSWLVDNDIARSLLSVPGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   S  +  ++    DP+RL+ L  T  +++      N    G    V     +     
Sbjct: 175 QVQRSGGVDREIRINLDPNRLQALGVTADQVNAQIRSLNIDLPGGRGEVGPSEQAIRTLG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +    +                               T   +    A      
Sbjct: 235 SAPTIERLRSTQIALP--------------------NGTLARLDTIGTVTDGPAEQRQLA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +        LR          +          S   
Sbjct: 275 FLNGKPAVSFSVIRSTGSNLVDVEKGVEKKVEELRKSMPGDIRIQMIRTTADFVHMSYDA 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + AGL ++V++  +   +   +A  ++ L+ I T A++ + G TL   S+  + 
Sbjct: 335 SIEALLLGAGLAVVVIWFFLRDWRSTFIAGLAMPLSAIPTFAVMKVAGFTLNNMSLLALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I       +  F +           +  + +T ++  V + F G
Sbjct: 395 LVVGILVDDAIVEIENIVRHIGMGKRPFQAALDAADEIGLAVVATTMTIVVVFVPVAFMG 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F  T+  ++L S+  A      M  ++++           +  +  +    
Sbjct: 455 GIPGQFFRQFGWTVAAAVLFSLVVARMATPLMAAYLMKPLPHAEEKGRLVRTYDRVLGWA 514

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
               +   +  V     F+     +        G   +G   L V       L   R  +
Sbjct: 515 LAHRV---WTLVFAVAFFAGSVALIPLLPTSLIGAVDRGETVLSVDLPPGSSLQDTRRKV 571

Query: 599 ESL 601
           + +
Sbjct: 572 DQI 574



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 80/245 (32%), Gaps = 8/245 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           Q+ +       L  + +  +                     ++    + V   + +E   
Sbjct: 246 QIALPNGTLARLDTIGTVTDGPAEQRQLAFLNGKPAVSFSVIRSTGSNLVDVEKGVEKKV 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
           +++ + +P                      I  +++ A   ++ IW   + W     A  
Sbjct: 306 EELRKSMPGDIRIQMIRTTADFVHMSYDASIEALLLGAGLAVVVIWFFLRDWRSTFIAGL 365

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L    T     + G   N  ++ A+  ++G  V+D +V  + +   ++         
Sbjct: 366 AMPLSAIPTFAVMKVAGFTLNNMSLLALALVVGILVDDAIVEIENI---VRHIGMGKRPF 422

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                + +E     V T+M   +  +P+A  G   G     F   +A  ++ +   +  +
Sbjct: 423 QAALDAADEIGLAVVATTMTIVVVFVPVAFMGGIPGQFFRQFGWTVAAAVLFSLVVAR-M 481

Query: 816 AAPIL 820
           A P++
Sbjct: 482 ATPLM 486



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 88/236 (37%), Gaps = 7/236 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  + +G  + Q    ++   V ++            L  V+K    +   + ++   
Sbjct: 776  KSVADISVGSGAAQIDRYDRARKVSIEANLAPGTELGTALRTVRKLSAFMNLPAGVKEQP 835

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +I R++    +  +  + + +   + + F  +   L  + +L L +         F
Sbjct: 836  AGDSEIQRDVFSGFMYAIAAAVLLIYAVLVLLFGGFLQPLTIMMSLPLSLGGAFIGLLFF 895

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G    L A+  ++ L+G    + +++ +     +          + +  +    +   + 
Sbjct: 896  GKSLGLYALIGIIMLMGLVTKNAILLVE---YCLMAMKEGRPRLEALMSAGEARMRPILM 952

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            T++A    ++P+A+    G  V    A+ +  G++ +   ++ I   +  ++ D +
Sbjct: 953  TTIAMIAGMMPIALGIGAGSEVRSPMAVAVVGGLITSTLLTLVIIPVVFTYVDDLQ 1008


>gi|68533167|dbj|BAE06008.1| RND multidrug efflux transporter MexQ [Pseudomonas aeruginosa]
          Length = 1053

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/523 (12%), Positives = 151/523 (28%), Gaps = 36/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              + ++L  ++   G++        Q  L  +P+  P               +      
Sbjct: 10  RPIFAIVLSVLMMIGGIVS-----FFQLPLSEYPAVTPPT-----------VQVTTAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFL 119
              D +   +    ++  + ++               I T++F      +    +V   +
Sbjct: 54  ANPDVIAQTVATPLEQAITGVEGMLYMSSQSATDGRMILTITFDQHIDPDMAQIQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V S+L  + ++  +VT       +++      +     +  S     Q  D++     
Sbjct: 114 SRVLSRLPDEVQRQGVVTQKTSPDILMVVHLLSPEQRYDPLYISNYAYLQVRDELLRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               +        +    DP  +     T  ++       N        G      +   
Sbjct: 174 ISDVVVWGAGEYSMRLWLDPDLIAARGLTAGEVIAAVREQNVQVAAGAVGQAP-DSTAAF 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V     +S                +    I       +         I         
Sbjct: 233 QVTVNTLGRLSDEE-------------QFGDIIVRTGADGQVTRLRDVARIEMGGDAYAL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +   T E      A L           +          S 
Sbjct: 280 RSLLDGEPAVALQIIQSPGANALDTAEAVRATVARLEGNFPAGLSARIAYDPTVFVRASL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  L+   ++ ++++ T A++ L+G +L   S+ G
Sbjct: 340 QTVATTLLEAILLVVVVVVLFLRSWRASLIPLMAVPVSLVGTFAVMHLMGFSLNTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV--- 476
           +VL IG+ VD  I+V E +       +    +           I           +    
Sbjct: 400 LVLSIGIVVDDAIVVVENVERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAF 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           L    G   R FA+T+ +S ++S   ++++  A+   ++R + 
Sbjct: 460 LSGLQGEFYRQFALTIAISTILSALNSLTLSPALAGLLLRPRP 502



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 6/166 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +  +   +A LI       W   L  +  + + +   +    L G + N+     ++ L
Sbjct: 877  FIFPLCVLLAYLILAAQYNSWLLPLAVLLIVPMCLLSAIAGVWLVGGDNNVFVQIGLVVL 936

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G +  + +++ +  R    L        + + ++    L   + TS+A    V+P+ + 
Sbjct: 937  VGLAAKNAILIVEFAR---TLEAEGARALEAVVEACRLRLRPILMTSLAFIAGVVPLVMA 993

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +  +  + +  G++      +F+     + +    A+  R
Sbjct: 994  SGAGAEMRQAMGVAVFAGMLGVTLFGLFLTPVFYVLVRALAARLER 1039



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 6/143 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  +L  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + +   
Sbjct: 362 RSWRASLIPLMAVPVSLVGTFAVMHLMGFSLNTLSLFGLVLSIGIVVDDAIVVVENV--- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +             ++++E  G  +  TS   A FI    ++   G     FA+ +A  
Sbjct: 419 ERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAFLSGLQGEFYRQFALTIAIS 478

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
            +++A +S+ ++  +   +   R
Sbjct: 479 TILSALNSLTLSPALAGLLLRPR 501


>gi|15889751|ref|NP_355432.1| AcrB/AcrD/AcrF family protein [Agrobacterium tumefaciens str. C58]
 gi|15157669|gb|AAK88217.1| AcrB/AcrD/AcrF family protein [Agrobacterium tumefaciens str. C58]
          Length = 1064

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/544 (11%), Positives = 148/544 (27%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL      +    +  +P  +P + +                  
Sbjct: 10  RPVFAGVLSILIVVAGLL-----GMRALPISEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PTVIAETVATPLEEQINGVEDMLYMGSQATSDGVLTLTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + +   + T       I++                        D++   E   
Sbjct: 116 AEPRLPAEVRALGITTVKSSPDFIMVVNLVSKTDAYDITYLRNYATLNVKDRLARIEGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +     A +S      N      + G     +    Q 
Sbjct: 176 QVQVFGAGDYSMRVWLDPQKVAEHDLAAADVSDAIRQQNVQAAAGVIGASPSPNGVDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  ++                +    I                 I    A      
Sbjct: 236 NVNAQGRLT-------------TPEEFGNIIVKSGANGEITRLRDVARIELGAADYTLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L+          +          S   
Sbjct: 283 LLDGEPAVAVAVLQAPGSNAIEIADNVRATMDNLQLAMPDGVKYEIVYDTTKFVRSSIEK 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T     GLV++V+ + +   +  ++   ++ +++I T A++   G ++   ++ G+V
Sbjct: 343 VVDTLLEAVGLVVLVVILFLQTWRASIIPLIAVPVSIIGTFAVMYAFGFSINALTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIENGLSPRDATYKAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S +IS   ++++  A+   +++        +       L     
Sbjct: 463 GLSGQFYRQFALTIAISTVISAINSLTLSPALAALLLKEHGAPKDWLTRFMDKILGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 GFNR 526



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 +  I  + L +   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPIAIILIVPLGVLAALTGVWLTGGDNNIFTQIGLVVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+ V    G  +  +  + +  G+
Sbjct: 960  -LEFEGRTPLQAAVEASRLRLRPILMTSLAFIMGVVPLVVSTGAGAEMRAAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      IF+     + +  
Sbjct: 1019 IGVTFFGIFMTPVFYVLVRK 1038



 Score = 45.5 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T      FG   N   +  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---IAVPVSIIGTFAVMYAFGFSINALTLFGLVLAIGIVVDDAIVVVENVERNI---E 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S RD   K++ E  G  +  ++      +P+A      G     FA+ +A   V++A
Sbjct: 425 NGLSPRDATYKAMREVSGPIIAIALVLVAVFVPLAFISGLSGQFYRQFALTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 INS 487


>gi|294788737|ref|ZP_06753978.1| multiple transferable resistance system protein MtrD [Simonsiella
           muelleri ATCC 29453]
 gi|294483219|gb|EFG30905.1| multiple transferable resistance system protein MtrD [Simonsiella
           muelleri ATCC 29453]
          Length = 1073

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 69/562 (12%), Positives = 155/562 (27%), Gaps = 38/562 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G++           + ++PS      I+L                
Sbjct: 8   RPVFAWVISIFIILAGVIAI-----RNLPVSQYPSVAAPT-INL--------TATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + ++       S        ++L+F     +      V   L  
Sbjct: 54  AQVMEDSVLAVIERAMNGIEGLDYMSTSADSSGSGSVSLTFTPETNENMAQMDVQNKLSE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L    ++  +  +  +   +++             + +    R  I ++   E   
Sbjct: 114 VLATLPSTVQQYGVTVSKSRSNFLMVIILKSQ--QKSLEDMADYAQRNVIPELQRIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  +L+    + A +S      N        G   L +      
Sbjct: 172 SVRMFASQR-AMRVWVDAKKLKSYNLSFADISSAISAQNAQISAGTMGALPLAEGQTITA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++S                +    +          +      I           
Sbjct: 231 TITAQGQLS-------------TPEEFGEIMLKTTTSGANVYLKDVARIELGSESYATST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T +      A L+                     S   
Sbjct: 278 RLNGVPSVGMAVMLSNSGNATATAKLVRAKMASLQNYFPGDITWAAPYDTSKFVDISIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   ++ L+    + ++++   A +  LG ++ + ++  +V
Sbjct: 338 VIHTLVEAMVLVFIVMFVFLQNFRYTLIPAIVVPISLLGGFAGIYYLGMSINVLTMFAMV 397

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +     S+    +       +   + L FF
Sbjct: 398 LVIGIVVDDAIVVVENVERIMAEEGLPPMKATQKAMSQISGAVIGITAVLISVFIPLMFF 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLI 534
               G     FA TM L+I  S F A+++  A+   +   I++   K             
Sbjct: 458 SGAQGKIYTQFAATMALAIGFSAFLALTLTPALCATLLKPIKHGHQKKRGFFGWFNRKFD 517

Query: 535 PDCIAIQFMRARFWGVGISILF 556
                 +    RF     S++ 
Sbjct: 518 STNNRYKKWVERFLRRAGSLMI 539



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/288 (10%), Positives = 92/288 (31%), Gaps = 20/288 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    L +       +++  S     +      Q+     
Sbjct: 772  FPNNGRLQKVMVMADETGRMQDEEILSLPVTNNAGVAIPLSTFVKKEWKVGMQQSVRFNG 831

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +++   P    +   + + +++ + +I   +          + ++      +V  + 
Sbjct: 832  YPAMQISTTPSGVSSGVAMAK-IQELMKDIGGGNYSVEWAGQSREEAKGSSETTLVYALA 890

Query: 676  SAIAMLIYIWIRFKWYFALG-AITTLILDITKTLGF-------FALFGIEF----NLTAV 723
            +    L+   +   W   L   +   +  +   LG         +L GI      ++  V
Sbjct: 891  AMAIFLVLAALYESWAIPLSVLMVAPLGFLGVVLGVWMRNRFNMSL-GIPIEYANDIYFV 949

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++T++G S  + +++ +  +    L     +       + +      + TS A  + V
Sbjct: 950  VGMITVVGLSAKNAILIIEFAKD---LQEEGKTPFQAALDAAHLRFRPILMTSFAFILGV 1006

Query: 784  LPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +P+    G+      +    + +G+ +    S+F+     +F+  +  
Sbjct: 1007 VPLYFSSGASAASQRAIGTTVFWGMTIGTLFSVFLVPVFYVFVRKFFK 1054



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 87/255 (34%), Gaps = 6/255 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   +     +   V L  V       +    S +        +  +    G++ A  ++
Sbjct: 244 FGEIMLKTTTSGANVYLKDVARIELGSESYATSTRLNGVPSVGMAVMLSNSGNATATAKL 303

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           +      +    P            K     I K I  ++ + + + I +++  + + + 
Sbjct: 304 VRAKMASLQNYFPGDITWAAPYDTSKFVDISIEKVIHTLVEAMVLVFIVMFVFLQNFRYT 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + +          G+  N+  + A++ +IG  V+D +VV + +     +   
Sbjct: 364 LIPAIVVPISLLGGFAGIYYLGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMAEE 421

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAAS 810
            +       K++++  G  +  +       +P+  + G+       FA  MA  I  +A 
Sbjct: 422 GLPPMKATQKAMSQISGAVIGITAVLISVFIPLMFFSGAQGKIYTQFAATMALAIGFSAF 481

Query: 811 SSIFIAAPILLFIYD 825
            ++ +   +   +  
Sbjct: 482 LALTLTPALCATLLK 496


>gi|186474285|ref|YP_001861627.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           phymatum STM815]
 gi|184196617|gb|ACC74581.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phymatum STM815]
          Length = 1089

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/682 (10%), Positives = 171/682 (25%), Gaps = 48/682 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L          ++P   P               + +    
Sbjct: 10  RPIFASVISIVITLGGALTML-----ALPTAQYPDITPP-------------QITISATY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +    +  +   +        +   S       I   F      E     V  
Sbjct: 52  PGASADVVANNVAAPIEQQVNGADNMIYMSSSSSSTGNLTINAYFQIGTNPELAQVDVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L        +    + +  +++           A   +       +D +   
Sbjct: 112 RVNLALPQLPQSVTNQGVQVQKKSQAFMMVIAIYSPTERYDATYIANYANVYVLDALKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P R+ QL  T A +       N        G     +  
Sbjct: 172 PGANQSSIFGTPDYAMRIWLRPDRMAQLGITAADVQRAVANQNQQFAVGRLGQSPTGNPV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + V     ++              T    + I     GA                  
Sbjct: 232 EQSFAVTTTGRLT------------EPTQFENIIIRAQSGGAAIVRLKDIGRAELGQKDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +     +      A ++          +          
Sbjct: 280 SIRSRFQGKPATVIAVYQQPGANALDVSKQVRATLAEMKKSFPEGIDYEIAMDTTEFTRA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV+IV+F+ +   +  L+   ++ ++++ T   +  LG ++ + ++
Sbjct: 340 SISDVVHTFFEAVVLVVIVVFVFLQSLRATLIPVLAVPVSIVGTFMGMEALGFSINMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +             +           +    +      V 
Sbjct: 400 FGMVLAIGIVVDDAIVVIENVERNMTVHKLDPKTAAKQAMDEVAGPVVAIVLVLCAVFVP 459

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   + FAIT+ +S++IS   A+++  A+   +++    +            
Sbjct: 460 VAFLGGITGQMYKQFAITIAISVVISGVVALTLSPALAALLLKPGHHEKKGFFRWFDN-- 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  QF R          L     +  L       G+       +      P D   
Sbjct: 518 -------QFARMTAGYTRAVRLVIRRFVIALLLFVGMIGLAVLMMRDIPTAFLPPEDQGY 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +       +       ++     ++     S+       ++  +         +  
Sbjct: 571 LLGAVIMPDAASLDRTGKVSDRISEYFMKQPAVGSITTVDGFSILDSQNKNNSSTFFVGF 630

Query: 654 TEIVGPKISRELIRKGIVGVII 675
                   S  +  +    V++
Sbjct: 631 RSFEERYRSANIRTQNARAVLV 652



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 5/123 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  +  + + I  T       G   N+  +  ++  IG  V+D +VV + +    
Sbjct: 365 SLRATLIPVLAVPVSIVGTFMGMEALGFSINMLTLFGMVLAIGIVVDDAIVVIENV--ER 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +  +    ++++E  G  V   +      +P+A  G   G +   FAI +A  +
Sbjct: 423 NMTVHKLDPKTAAKQAMDEVAGPVVAIVLVLCAVFVPVAFLGGITGQMYKQFAITIAISV 482

Query: 806 VVA 808
           V++
Sbjct: 483 VIS 485



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 68/194 (35%), Gaps = 9/194 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFA 693
             V   + E+              +        G  G++     +++++ +     KW   
Sbjct: 841  QVISALEELAASMPSDYGVAWSGEAFEAKQSGGTSGLVFVFGLIMVFLILAAQYEKWSLP 900

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             G +  +   +   L    L G+  ++     +  L+  +  + +++++     +    +
Sbjct: 901  FGVLMAVPFALFGALLAILLRGLNNDVYFQIGLTMLVALAAKNAILIFEFA---VLNRES 957

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAAS 810
              S  D    +  E L   V TS+A  +  +P+A+  G+      S    +  G++ A +
Sbjct: 958  GKSVFDATMTAAEERLRPIVMTSLAFILGCVPLAIATGASANSRHSIGTGVIGGMLGATA 1017

Query: 811  SSIFIAAPILLFIY 824
             ++F        + 
Sbjct: 1018 IAVFFIPMFFYVLE 1031


>gi|5764625|gb|AAD51345.1|AF173226_2 SmeB [Stenotrophomonas maltophilia]
          Length = 1049

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/552 (11%), Positives = 145/552 (26%), Gaps = 33/552 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +      +     +    +DR+P   P                      
Sbjct: 8   RPIFAWVIAIAVS-----LLGLLAILILPVDRYPQIAPPTIT---------IRATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++ +  L        +     + ++ L FA     +    +V   LQ 
Sbjct: 54  SQTVENAVTQVIEQSQQSLDHLMYMTSTSASDGSAQVNLVFATGTNPDTAQVQVQNQLQA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    ++N L  T        +     +       + +  +  +  DQI       
Sbjct: 114 AMATLPQAVQQNGLTITKSSGSIFEVLSFTSEDGSMDNFDVANFMEARIDDQISRVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++RQ       +       N        G +          
Sbjct: 174 NIQPIG-QEYAMRIWLDPEKMRQYALMPWDIETALQAQNTDVSAGELGGQPALKGQQLDA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +   +             IG          
Sbjct: 233 TVTARSRL-------------HTPEQFAQVVLKADANGSVVRLGDVAKIGLGPESYDSIS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +     +        L+          V          S   
Sbjct: 280 TFNGKPSASLGIELNAGANAIAVSKAIDARLQQLQKYWPHGYTAHVAFTTTPFVTISLKE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 340 VVITLIEAIILVVLVMYLFLQNWRATLIPTIAVPVVLLGTFGVLAAFGYSINTLTMFALV 399

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +         +   +      +    +    +      + + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERVMTFEGLAPKPATLKAMGQITGALVGIVLVLTAVFLPMAFF 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F++T+  ++++S+  A++I  A+   I+                  +   
Sbjct: 460 SGVTGVIYRQFSVTIAAAMILSVLVAMTITPALCGSILHQIPKGGHPHGDHGGEPSLLGK 519

Query: 538 IAIQFMRARFWG 549
             I F       
Sbjct: 520 FFIWFNHRFERT 531



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 93/235 (39%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D            L        +++A ++ ++   +++ +  P 
Sbjct: 260 VRLGDVAKIGLGPESYDSISTFNGKPSASLGIELNAGANAIAVSKAIDARLQQLQKYWPH 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +            +++ ++ +I + I +++ +++  + W   L     + + +  T
Sbjct: 320 GYTAHVAFTTTPFVTISLKEVVITLIEAIILVVLVMYLFLQNWRATLIPTIAVPVVLLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A FG   N   + A++  IG  V+D +VV + +     +    ++ +    K++ +
Sbjct: 380 FGVLAAFGYSINTLTMFALVLAIGLLVDDAIVVVENV--ERVMTFEGLAPKPATLKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V   +      LPMA + G   VI   F++ +A  ++++   ++ I   +
Sbjct: 438 ITGALVGIVLVLTAVFLPMAFFSGVTGVIYRQFSVTIAAAMILSVLVAMTITPAL 492



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 83/263 (31%), Gaps = 18/263 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +   A + V LS + S   +     +   N         +         
Sbjct: 782  RMQPQDIERWSVRNQAGQMVPLSSLISTHWTSAPAAVQRYNGISAMEITGQPAPGVSSGE 841

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   +  +            +    +         ++        IS + + + +   ++
Sbjct: 842  AMAEIARLADTLPEGFSHAWSDMAYQEQLSGNQAPMLY------AISLLFVFLCLAALYE 895

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRK 746
             W      +  + + +   +    L G+  ++     +LT IG +  + +++  + R+ +
Sbjct: 896  SWAVPFAVMLAVPVGMFGAVLMMNLRGLNNDVYFQVGLLTTIGLAAKNGILIVEFARILE 955

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                     S R+ I +++   L   V TS+A  + VLP+      G +   S    +A 
Sbjct: 956  -----QQGKSTREAILQAVYLRLRPIVMTSLAFLMGVLPLVFATGAGSAARRSLGTGVAG 1010

Query: 804  GIVVAASSSIFIAAPILLFIYDW 826
            G V +    +F   P+   +   
Sbjct: 1011 GTVASMVLGMFFV-PLFYLLVRR 1032


>gi|88608603|ref|YP_506303.1| putative protein-export membrane protein SecF [Neorickettsia
           sennetsu str. Miyayama]
 gi|88600772|gb|ABD46240.1| putative protein-export membrane protein SecF [Neorickettsia
           sennetsu str. Miyayama]
          Length = 298

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 83/284 (29%), Positives = 148/284 (52%), Gaps = 10/284 (3%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              F + +     IS    + +  LL T GL++GIDF GGI L V +   +D++ +R + 
Sbjct: 13  NFDFAKYKKAAFFISSTLLVVTFVLLKTKGLSFGIDFTGGIVLEVYSEEGIDITQLRGDF 72

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
              Q    +  ++  ++  L+            T++   +K        +  +      G
Sbjct: 73  SKNQNLPTASIHYLEDQRHLMIKVRSQDFQDGLTKMKSFLKPYNFRYDKIDCV------G 126

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P+IS+ LI +  V ++ S +AM +Y++ RF   FAL  + T + DIT  +  ++ + +EF
Sbjct: 127 PQISKSLIYRSGVAIVFSVLAMFVYLFFRFTPAFALSGVLTTLHDITLLICLYSAYELEF 186

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           N ++VAAVL ++GYS+ND VV++D++R+N+ +     +    I+ S+N TL R++ TS+ 
Sbjct: 187 NTSSVAAVLAIVGYSINDSVVIFDKLRENIGIK----NIAKRINVSVNTTLSRTILTSVT 242

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             +++ P+       I  F+  +  GI +   SSIFIAAP+ L 
Sbjct: 243 TMLAIAPVIFLSSGDIQVFSFIILAGIAIGTYSSIFIAAPLALL 286


>gi|238926092|gb|ACR78460.1| RND family multidrug efflux permease protein OqxB [Klebsiella
           pneumoniae]
          Length = 1050

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/505 (11%), Positives = 134/505 (26%), Gaps = 32/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPGGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPQESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 FGGGAVRGFAITMGLSILISMFTAI 504
             G   + +        + ++ +AI
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAI 485



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     +   +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRRKPV 1044



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 89/266 (33%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+      ++ +   P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMAEL-ATRFPEDMQWAAPYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                   + +L+ I     W  ++  +  + + +  T     L G   N  ++  ++  
Sbjct: 345 QTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487


>gi|296387975|ref|ZP_06877450.1| putative RND efflux transporter [Pseudomonas aeruginosa PAb1]
          Length = 1053

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 67/523 (12%), Positives = 151/523 (28%), Gaps = 36/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              + ++L  ++   G++        Q  L  +P+  P               +      
Sbjct: 10  RPIFAIVLSVLMMIGGIVS-----FFQLPLSEYPAVTPPT-----------VQVTTAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFL 119
              D +   +    ++  + ++               I T++F      +    +V   +
Sbjct: 54  ANPDVIAQTVATPLEQAITGVEGMLYMSSQSATDGRMILTITFDQHIDPDMAQIQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V S+L  + ++  +VT       +++      +     +  S     Q  D++     
Sbjct: 114 SRVLSRLPDEVQRQGVVTQKTSPDILMVVHLLSPEQRYDPLYISNYAYLQVRDELLRLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               +        +    DP  +     T  ++       N        G      +   
Sbjct: 174 ISDVVVWGAGEYSMRLWLDPDLIAARGLTAGEVIAAVREQNVQVAAGAVGQAP-DSTAAF 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V     +S                +    I       +         I         
Sbjct: 233 QVTVNTLGRLSDEE-------------QFGDIIVRTGADGQVTRLRDVARIEMGGDAYAL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +   T E      A L           +          S 
Sbjct: 280 RSLLDGEPAVALQIIQSPGANALDTAEAVRATVARLEGNFPAGLSARIAYDPTVFVRASL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  L+   ++ ++++ T A++ L+G +L   S+ G
Sbjct: 340 QTVATTLLEAILLVVVVVVLFLRSWRASLIPLMAVPVSLVGTFAIMHLMGFSLNTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV--- 476
           +VL IG+ VD  I+V E +       +    +           I           +    
Sbjct: 400 LVLSIGIVVDDAIVVVENVERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAF 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           L    G   R FA+T+ +S ++S   ++++  A+   ++R + 
Sbjct: 460 LSGLQGEFYRQFALTIAISTILSALNSLTLSPALAGLLLRPRP 502



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 62/166 (37%), Gaps = 6/166 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +  +   +A LI       W   L  +  + + +   +    L G + N+     ++ L
Sbjct: 877  FIFPLCVLLAYLILAAQYNSWLLPLAVLLIVPMCLLSAIAGVWLVGGDNNVFVQIGLVVL 936

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G +  + +++ +  R    L        + + ++    L   + TS+A    V+P+ + 
Sbjct: 937  VGLAAKNAILIVEFAR---TLEAEGARALEAVVEACRLRLRPILMTSLAFIAGVVPLVMA 993

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +  +  + +  G++      +F+     + +    A+  R
Sbjct: 994  SGAGAEMRQAMGVAVFAGMLGVTLFGLFLTPVFYVLVRALAARLER 1039



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 58/143 (40%), Gaps = 6/143 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  +L  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + +   
Sbjct: 362 RSWRASLIPLMAVPVSLVGTFAIMHLMGFSLNTLSLFGLVLSIGIVVDDAIVVVENV--- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +             ++++E  G  +  TS   A FI    ++   G     FA+ +A  
Sbjct: 419 ERHIENGEPPLQAARRAMDEVTGPIMAITSVLAAVFIPTAFLSGLQGEFYRQFALTIAIS 478

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
            +++A +S+ ++  +   +   R
Sbjct: 479 TILSALNSLTLSPALAGLLLRPR 501


>gi|227358357|ref|ZP_03842697.1| multidrug efflux pump [Proteus mirabilis ATCC 29906]
 gi|227161393|gb|EEI46437.1| multidrug efflux pump [Proteus mirabilis ATCC 29906]
          Length = 1044

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/684 (10%), Positives = 180/684 (26%), Gaps = 42/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G L  +     +  + ++P       +            V     
Sbjct: 8   RPILSWVMAIVIMIAGGLSLI-----KLPVSQYPEIAAPAIM---------ITAVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  S L        +     + ++  +F      +    +V   LQ 
Sbjct: 54  AETVQDTVVQVIEQELSGLDGFRYLSSNSNTDGSFEVIATFEQGTDSDIALMQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL ++ ++  +     +   + +     +     A +    +     D I   +   
Sbjct: 114 ATPKLPLEVQRQGMRVVKFQINFMQVVALVDESGKLDAFDLGNYLASHMKDPISRIDGMG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    DP +L         ++      N                     
Sbjct: 174 DILLLGSPR-AMRIWLDPDKLTNYHLMPKDIAAAIQDENVQVSAGQLAGLPALKGVELNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +  +                   +    +   +        +           
Sbjct: 233 TITSSSRMVSVDEFNH-------------ILLKVNLDGSQVLLQDVAKVEVGADNFSISS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +     +    +              +       +   S S 
Sbjct: 280 LYNGKPSAGMAMRLAPGANLLDVSKKVKEVVEAQSQFFPQGVKALFPYDTTPSVKSSISS 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    + LV +V+F+ +   +  LV   +I + ++ T  +L+ LG T+ + ++  +V
Sbjct: 340 VVRTIVEASILVFLVMFLFLQNIRATLVPTLAIPVVLLGTFGVLAALGLTINVLTMYAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     +   SV  +  +  ++    +    +      V + FF
Sbjct: 400 LAIGLLVDDAIVVVENVERIMHEQAISVKEATILSMTQIQGALVGIGLVLSAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFFLIP 535
           GG      R FA T+ +++ +S+  A++   A+   I++  +   K              
Sbjct: 460 GGSAGIIYRQFAATIVVAMALSVLIALTFTPALCASILKKPQPKVKKRRGFFWLFNRFFD 519

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID-------FKGGIQLGVLANRP 588
                     R           I  I  + T  L   +         +G + + V     
Sbjct: 520 RGTNYYEKGVRNILYRRGRYMFIFLIITVGTGWLFTQLPKAFLPNEDQGVVMIEVRMPAN 579

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +   +   +   ++ +    +  F V      G           +          
Sbjct: 580 STAERMEQTMAEFRDYLLTEEKHLVKTVFTVNGFNFAGRGQNAGMAFVNLADWSERKGKG 639

Query: 649 STIQNTEIVGPKISRELIRKGIVG 672
             + +      +    +    ++ 
Sbjct: 640 EDVFSLVARAQQHFNSIRDGMVIA 663



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 78/208 (37%), Gaps = 8/208 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S     V+E   +   + V      +T          ++R  +   I+  + M +++   
Sbjct: 303 SKKVKEVVEAQSQFFPQGVKALFPYDTTPSVKSSISSVVRTIVEASILVFLVMFLFLQ-- 360

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + +  T G  A  G+  N+  + A++  IG  V+D +VV + +   
Sbjct: 361 -NIRATLVPTLAIPVVLLGTFGVLAALGLTINVLTMYAMVLAIGLLVDDAIVVVENV--E 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFG 804
             ++  +IS ++    S+ +  G  V   +      +PMA +GGS   +   FA  +   
Sbjct: 418 RIMHEQAISVKEATILSMTQIQGALVGIGLVLSAVFVPMAFFGGSAGIIYRQFAATIVVA 477

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + ++   ++     +   I        +
Sbjct: 478 MALSVLIALTFTPALCASILKKPQPKVK 505



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 10/164 (6%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA--LFGIEFNLTAVAAVLTLI 730
            +++ + + + +   ++ W         L++         A  L G+  ++     ++T I
Sbjct: 875  VMTILFVFLSLAALYESWSVPFS--VALVVPFGILGAVIATLLRGLSSDVYFQIGLMTTI 932

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G S  + +++ +  +             D   ++    L   + TS+A    VLPMA+  
Sbjct: 933  GLSAKNAILIVEFAK--HLYEKDGKPLIDAAAEAARMRLRPIIMTSLAFTFGVLPMALAA 990

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G     S A  +  G++ +   +IF      +F+    ++  
Sbjct: 991  GAGQGSQHSVATGVIGGMLASTFLAIFFVPLFYVFVVKLFSRKK 1034


>gi|169303066|ref|YP_001693238.1| OqxB integral membrane protein [Escherichia coli]
 gi|167898278|gb|AAP43110.2| OqxB integral membrane protein [Escherichia coli]
 gi|239615746|gb|ACR83611.1| RND family multidrug efflux permease [Escherichia coli]
 gi|260103549|gb|ACX31789.1| RND family multidrug efflux permease [Escherichia coli]
 gi|312831573|dbj|BAJ34732.1| OqxB integral membrane protein [Escherichia coli]
 gi|312831576|dbj|BAJ34734.1| OqxB integral membrane protein [Escherichia coli]
 gi|312831579|dbj|BAJ34736.1| OqxB integral membrane protein [Escherichia coli]
 gi|312831582|dbj|BAJ34738.1| OqxB integral membrane protein [Escherichia coli]
          Length = 1050

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/505 (11%), Positives = 134/505 (26%), Gaps = 32/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPGGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPQESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 FGGGAVRGFAITMGLSILISMFTAI 504
             G   + +        + ++ +AI
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAI 485



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     +   +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRRKPV 1044



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 89/266 (33%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+      ++ +   P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMAEL-ATRFPEDMQWAAPYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                   + +L+ I     W  ++  +  + + +  T     L G   N  ++  ++  
Sbjct: 345 QTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487


>gi|156743264|ref|YP_001433393.1| protein-export membrane protein SecF [Roseiflexus castenholzii DSM
           13941]
 gi|156234592|gb|ABU59375.1| protein-export membrane protein SecF [Roseiflexus castenholzii DSM
           13941]
          Length = 324

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 74/304 (24%), Positives = 139/304 (45%), Gaps = 17/304 (5%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV----DLSVVRSNLE 599
           + R+W   +S+L  I  +  L   GL  GIDF GG    +          D   +RS   
Sbjct: 6   KLRYWWFALSMLIIIPGLVSLAIVGLRLGIDFSGGALWDLQFVERAPGQLDTERIRSIFA 65

Query: 600 SLQIGDISFQNFDGEKNFLVR----LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +        Q  + + +        ++ +           + V   +         Q  +
Sbjct: 66  AQGFEGALVQLTESQVDGRTVASAVVRTRSLSETDPETQRQQVLSALKSEYGQVNQQALQ 125

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGF 710
            VG  +S E  R  ++ VI + + +LIY+ + F+       + + AI  +I D+   LG 
Sbjct: 126 TVGATVSAESTRSAVIAVIAACVVILIYLTLAFRRAPHPVRYGVCAILAMIHDVLLVLGV 185

Query: 711 FALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            ++ G    +E +   + A+LT+I +SV+D +VV+DR+R+N+     + +F D+++ SI 
Sbjct: 186 ASILGVVIGLEVDALFLTALLTVISFSVHDTIVVFDRIRENLINRRPTETFDDIVNHSIV 245

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +TL RSV T +  F +++ + ++GG  I +  + +  G++    SSIF AA +L+   + 
Sbjct: 246 QTLPRSVNTQLTTFFTLMALLLFGGESIRNLVLILLIGLISGTYSSIFNAAQLLVVWENR 305

Query: 827 RAKN 830
               
Sbjct: 306 EWNR 309


>gi|284123127|ref|ZP_06386899.1| SecD/SecF/SecDF export membrane protein [Candidatus Poribacteria
           sp. WGA-A3]
 gi|283829302|gb|EFC33706.1| SecD/SecF/SecDF export membrane protein [Candidatus Poribacteria
           sp. WGA-A3]
          Length = 306

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 80/295 (27%), Positives = 144/295 (48%), Gaps = 5/295 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL---NYGIDFKGGIQLGVLANRPVDLSVV 594
             I FM  R    G+S L  +  +  L   G    N GIDF GG  + +     + L   
Sbjct: 8   TNIDFMGKRHVAFGVSGLLVLLGLLALVQIGTGAANLGIDFAGGTAVQLKFENEIGLEQA 67

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R  L    + +   Q F  +   L+R++ +          +  V ++           +T
Sbjct: 68  RQALGKHGLHEAELQEFTQDHKLLIRVKTEGTLEQKIAERIVEVFEQEFSHNKFVVDSST 127

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E +GP I   L +  ++ + IS I +++Y+  RF+  F + A      D+   LG + L 
Sbjct: 128 E-IGPTIGYRLQQDALLAITISLIGIILYVATRFELRFGVAAAIATFHDVLAVLGIYYLL 186

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             E  L  V A+LTL GYS+ D VVV+DR+R+N++      +  ++I+  IN+ L R++ 
Sbjct: 187 DKEITLLVVTALLTLAGYSLTDSVVVFDRIRENLRA-RRRETILNIINAGINQVLTRTLI 245

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           T++   + ++P+ ++GG V+  F++ +  G++V   SS+F+A+P+LL     + +
Sbjct: 246 TTLTVVLVLVPLTLFGGEVLHDFSLALLMGVIVGTYSSVFVASPLLLVWPGGKGR 300


>gi|154251170|ref|YP_001411994.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154155120|gb|ABS62337.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Parvibaculum lavamentivorans DS-1]
          Length = 1069

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 64/548 (11%), Positives = 150/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  MI   GLL      +P   +  +P  +P   +                  
Sbjct: 10  RPIFAGVLSIMIFLAGLLA-----MPNLPISEYPEVVPPTVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVATPLEESINGVEDMLYMSSQATTDGLMTLTVTFRLGADPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   E   
Sbjct: 116 AEPRLPEEVRRLGVTTIKSSPDLTMVVHLTSPNDRYDMTYLRNYAVLNVKDRLARIEGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ +   +   +       N      + G          Q 
Sbjct: 176 EVGLFGSGDYSMRIWLDPQKIAERNLSAGDVVQEIRSQNVQAAAGIIGGSPSLPGIDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    A      
Sbjct: 236 SVNAQGRL-------------QTPEEFGEIIVKTGENGEVTRLRDISRIELGAAEYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L+          +          S   
Sbjct: 283 LLNNKSAVAIPIFQAPGSNAIRISDNVRETMAELKEHMPEGVDYSIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++ L G ++   S+ G+V
Sbjct: 343 VIHTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSIIGTFAVMYLFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +      +           I    +  +   V L    
Sbjct: 403 LAIGIVVDDAIVVVENVERNIERGLKPLQASYQAMREVSGPIVAIALVLVAVFVPLAMIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +S +IS   ++++  A+   +++        +      +L     
Sbjct: 463 GLTGQFYRQFALTIAISTVISAINSLTLSPALAALLLKGHDAPKDGLTRFMDRWLGWLFR 522

Query: 539 AIQFMRAR 546
               + +R
Sbjct: 523 RFNALFSR 530



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/396 (11%), Positives = 113/396 (28%), Gaps = 32/396 (8%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
            ++    +  +  I D+ I            G G + GF + +            ++ +A 
Sbjct: 654  AIAEQLNEKFGGIQDAYIAMF---PPPPVQGLGTIGGFKLQIEDRTGRGYAELDTVTKAF 710

Query: 511  MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
            +    +  ++  +  +       +   +     R     V          +  L+ +  N
Sbjct: 711  LAAAEKAPELTGLFSSYQVNVPQLYVDLDRTRARQLGVPVTSVFETMQVYLGSLYVNDFN 770

Query: 571  YG-----------------IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                                +  G +Q+   +   V LS +     S         N   
Sbjct: 771  VFGRTYSVRAQADAAYRARPEDIGKLQVRSNSGEMVPLSALVRVQSSTGPERALRYNGFP 830

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              +             AQ  V  +  + + +                         I+  
Sbjct: 831  SADVNGGAAPGYSTGEAQAAVARIAAETLPKGFEY-----EWTELTYQEILAGNSAILVF 885

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI-EFNLTAVAAVLTLIGY 732
             I+   + + +  +++      +I  ++                + N+     ++ L+G 
Sbjct: 886  PIAIFLVFLVLAAQYESLTLPLSIIMIVPTGLLAAMTGVWLSAGDNNVFTQIGLIVLVGL 945

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            S  + +++ +  R+   L     S      ++    L   + TS+A  + VLP+A     
Sbjct: 946  SAKNAILIVEFARE---LEFAGRSPYQAAVEASRLRLRPILMTSIAFIMGVLPLATSTGA 1002

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  +  +  I +  G++      IF+     + +  
Sbjct: 1003 GAEMRNAMGIAVLSGMLGVTIFGIFLTPVFYVLLRR 1038



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 10/126 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIIGTFAVMYLFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI- 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                +       +++ E  G  V  ++      +P+A+     G     FA+     I 
Sbjct: 424 --ERGLKPLQASYQAMREVSGPIVAIALVLVAVFVPLAMISGLTGQFYRQFALT----IA 477

Query: 807 VAASSS 812
           ++   S
Sbjct: 478 ISTVIS 483


>gi|146298669|ref|YP_001193260.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Flavobacterium johnsoniae UW101]
 gi|146153087|gb|ABQ03941.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Flavobacterium johnsoniae UW101]
          Length = 1048

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/575 (12%), Positives = 158/575 (27%), Gaps = 43/575 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   I  IG L  L      + + ++P   P               + +   
Sbjct: 7   RRPIVAIVLSIFIVLIGGLSVL-----STPIAQYPEIAPPL-------------VQVSTS 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++      +   +   E +         +    + ++F      +N      
Sbjct: 49  YRGANALNVEQAVATPIEQKVNGVENMLYMQSTNTGDGSMTLNITFDMGTDLDNATMLTQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL  D K   + T     + +++               +       +D +  
Sbjct: 109 NRVNEATNKLPNDVKTTGVTTKKSLSMPMLILSLYSPNKTFDGNFLTNYANINIVDALAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +     P  + +   T   +       N    G  FG     ++
Sbjct: 169 IKGVGEVTLYGGSNYAMRIWVKPDIMAKYNLTVPDIIRSIQDQNAIAPGGKFGAPPATEN 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +   Y V  K  +                      I    +  ++        +      
Sbjct: 229 NEFTYNVMLKDRL-------------VNPEDFENIILKSNINNQQVRLKDIGTVTLGTES 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +     E        L           V      A  
Sbjct: 276 YASIAKLNGNPAGTIGIKQMPGSNALEVAENVKNTIERLSKRFPQDLKYRVSLDTTLAIS 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
              +    T      LV+IV+F+ +   +  L+   ++ +++I    L  +LG ++ + S
Sbjct: 336 EGINEIMHTLVEAIILVIIVVFIFLQNWRATLIPLLTVPVSLIGVFMLFPILGFSINVLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +        S   + +          I  + +   +   
Sbjct: 396 LLGLVLAIGIVVDDAIVVVEAVMHHIEHGMSPREATNQAMKEVSGPVIAIAIVLTAVFIP 455

Query: 476 VLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLS 529
           V    G  G   + FAIT+ +S++ S  +A+++  A+   +       K          +
Sbjct: 456 VALTPGITGRLYQQFAITIAISVIFSALSALTLSPALCSLLLKPNQEAKGWLGKFFGWFN 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
             F         F          S++F    +  +
Sbjct: 516 DKFGKFTNKYTGFSGFLIKKTARSLIFIGIIVGAI 550



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/455 (11%), Positives = 132/455 (29%), Gaps = 41/455 (9%)

Query: 404  LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
            +LS         S+AG  L       +N      ++E   + Q VF  L     +    I
Sbjct: 595  ILSQNQGVEYYTSVAGFSLIKNSVATNNGFFFVALKEWKEREQDVFQILKEVNGKVVFGI 654

Query: 464  FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
             ++ +         F FG   + G     G S+++      +             + K  
Sbjct: 655  PEATV---------FAFGPPPITGIGNAAGFSMMLQDREGNTPQYLFANAQQFMAEAKKR 705

Query: 524  DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL-----FTHGLNYGIDFKGG 578
                  R    P+   I     R     +++  S  +I +                 +  
Sbjct: 706  PEIGTIRTTFNPNVPQISLDIDREKVTELNLSLSDVNIAIGASLGGQYINEFNKFGRQYI 765

Query: 579  IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE----------KNFLVRLQYQPGDS 628
            + L    +  V+   +       +   +   +                F +    + G +
Sbjct: 766  VLLQADPSYTVNPEDINKIFVRSKDNKMIPISSIATIRKVSGPEFTTRFNLYRAAEIGGT 825

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR---KGIVGVIISAIAMLIYIW 685
             A           + E                +S +  +   KG    I++ + + + + 
Sbjct: 826  PAPGFTSAQAMTALQETAAKVLPAGMGYEWANMSYQEKQAEGKGNTVFIMALLFVFLILA 885

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV------AAVLTLIGYSVNDKV 738
             +++ W      +      +        +  +  +   V        ++ LIG +  + +
Sbjct: 886  AQYESWKLPFSVLLGTPFAVFGAFLGLYICRL-LSPDYVNNVFAQIGLVMLIGLAAKNAI 944

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ +  ++    Y   +  +D    +        + T+ A  + V+P+      G     
Sbjct: 945  LIVEFAKEE---YEKGMPAKDAALYAAKLRFRPILMTAFAFILGVVPLLTATGAGAQARK 1001

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               + +  G++VA    + +   + +FI  +  K 
Sbjct: 1002 VMGMTVFSGMLVATILGVCLIPVLFVFIETFGKKK 1036



 Score = 45.1 bits (104), Expect = 0.055,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 63/142 (44%), Gaps = 12/142 (8%)

Query: 690 WYFALGAITTL---ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           W   L  + T+   ++ +      F + G   N+ ++  ++  IG  V+D +VV + +  
Sbjct: 363 WRATLIPLLTVPVSLIGVFM---LFPILGFSINVLSLLGLVLAIGIVVDDAIVVVEAV-- 417

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAF 803
            M      +S R+  ++++ E  G  +  ++      +P+A+  G        FAI +A 
Sbjct: 418 -MHHIEHGMSPREATNQAMKEVSGPVIAIAIVLTAVFIPVALTPGITGRLYQQFAITIAI 476

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            ++ +A S++ ++  +   +  
Sbjct: 477 SVIFSALSALTLSPALCSLLLK 498


>gi|302541117|ref|ZP_07293459.1| LOW QUALITY PROTEIN: protein-export membrane protein SecF
           [Streptomyces hygroscopicus ATCC 53653]
 gi|302458735|gb|EFL21828.1| LOW QUALITY PROTEIN: protein-export membrane protein SecF
           [Streptomyces himastatinicus ATCC 53653]
          Length = 305

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/294 (27%), Positives = 139/294 (47%), Gaps = 13/294 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+  R     ISIL +I +I  L   GLN GI+F GG      +++ V +S  +   E
Sbjct: 18  YDFVGKRKIWYAISILITITAIAGLAVRGLNMGIEFSGGAVFNTPSSK-VSVSQAQEVAE 76

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
               G  +     G     +++           +          E+   +   +T++VGP
Sbjct: 77  KASGGHTAVVQELGRGGLRIQISELGTKEAVPVQE-----NLAKELGVKTDKIDTQLVGP 131

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
               E+  K   G+ I  + ++IY+ I F+W  AL A+  L+ D+T T+G +AL G E  
Sbjct: 132 SWGEEIAGKAWQGLAIFMVLVVIYLAIAFEWRMALAALIALVHDLTITVGVYALVGFEVT 191

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSM 777
              V  +LT++GYS+ D VVV+D +++  K  T     ++ ++ ++S+N TL RS+ T++
Sbjct: 192 PGTVIGLLTILGYSLYDTVVVFDGLKEGSKDITKQTRFTYPEVANRSLNSTLVRSINTTV 251

Query: 778 AAFISVLPMAVW-----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            A + V  M        G  ++   ++ +  G+   A SSIFIA P++      
Sbjct: 252 VALLPVGAMLFIGGGLLGAGMLNDISLALFVGLAAGAYSSIFIATPLVSDFKSR 305


>gi|94971097|ref|YP_593145.1| hydrophobe/amphiphile efflux-1 HAE1 [Candidatus Koribacter
           versatilis Ellin345]
 gi|94553147|gb|ABF43071.1| Hydrophobe/amphiphile efflux-1 HAE1 [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1055

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/508 (11%), Positives = 129/508 (25%), Gaps = 36/508 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  ++  IG++  L     +    +FP   P               + ++  
Sbjct: 7   RRPIVAMVIAILMVIIGVVSML-----RLPTAQFPDIAPPE-------------VQVKAT 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      +   +        +   +       +T++F              
Sbjct: 49  YPGADAETVEQAVATPIEQQMSGVDNMNYMFSTNANNGATTLTVNFDIKTDPSTDQILSQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           +     NS+L  D     +         ++L      +     I  +        DQ+  
Sbjct: 109 MRTNQANSQLPADVVNFGVTVQKSTMAPLMLITLYSPKGTYDNIFLANYSYINLNDQLTR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P  L +L  T  ++       N        G   +   
Sbjct: 169 VPGIASVTVFGAGQYAMRVWVKPDTLAKLSVTVPEIIKVIQAQNTVNPAGQIGGEPVPQG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y V  K  +             P   +    +                 I      
Sbjct: 229 QDFTYNVRAKGRL-------------PSAEEFEQIVVRANPDGSILRLKDVARIELGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                  +               +          L    +          +      A  
Sbjct: 276 YNIIGRYSGKPAAVVAVYQLPGSNAVKAAAGVRALMEEAKTRFPQDLDYDIALDTTVAVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                 + T A    LV++V+++ +   +  L+   ++ ++++ T  +  LLG ++   S
Sbjct: 336 EGLKEIQHTLAEAIVLVILVVYIFLQGWRTTLIPLLAVPVSLVGTFVVFPLLGFSINTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +        S   +           +    +      V 
Sbjct: 396 LFGLVLAIGIVVDDAIVVVEAVEHHIEHGLSPKDAAYKAMEEVSGPVVAIALILAAVFVP 455

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAI 504
             F  G   R +        +  +F+A 
Sbjct: 456 TAFIPGITGRLYQQFAITIAISVIFSAF 483



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 67/195 (34%), Gaps = 9/195 (4%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             S    + LE   K+                  K +  +    I G+  S + + + +  
Sbjct: 833  SSEQAIQALEETFKESMPSEMGFDYMGMSYQEKKAAEGVPASAIFGM--SLLFVFLILAA 890

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +++ W      +    + +     F    G+E N+     ++ LIG +  + +++ +  +
Sbjct: 891  QYESWSLPFSVLLGTPIAVAGAFAFLYFRGMENNIYVQIGLVMLIGLAAKNAILIVEFAK 950

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMA 802
                 Y    S  +    +    L   + T+ A  +  +P+    G   I        + 
Sbjct: 951  ---MEYDKGKSAEEAALIAAKLRLRPILMTAFAFILGCVPLWAASGAGAISRRVLGTAVI 1007

Query: 803  FGIVVAASSSIFIAA 817
             G++ A+  +IF+  
Sbjct: 1008 GGMMAASLLAIFLIP 1022



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 59/139 (42%), Gaps = 7/139 (5%)

Query: 676 SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           + + +++ ++I  + W   L  +  + + +  T   F L G   N  ++  ++  IG  V
Sbjct: 348 AIVLVILVVYIFLQGWRTTLIPLLAVPVSLVGTFVVFPLLGFSINTLSLFGLVLAIGIVV 407

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +D +VV + +          +S +D   K++ E  G  V  ++      +P A   G   
Sbjct: 408 DDAIVVVEAV---EHHIEHGLSPKDAAYKAMEEVSGPVVAIALILAAVFVPTAFIPGITG 464

Query: 795 G---SFAIPMAFGIVVAAS 810
                FAI +A  ++ +A 
Sbjct: 465 RLYQQFAITIAISVIFSAF 483


>gi|227536268|ref|ZP_03966317.1| acriflavin resistance protein D [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227243875|gb|EEI93890.1| acriflavin resistance protein D [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 1025

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/608 (12%), Positives = 167/608 (27%), Gaps = 44/608 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++   I   G +           +  +PS  P                     
Sbjct: 9   KRPVLTIVVNVTIILFGYI-----GYSFLGVREYPSIDPAIV---------SVRTNYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +        S  Q  + IT+ F   +  E  A+     +  
Sbjct: 55  NPDIIESQITEPLEKSINSIDGIRNITSSSSQGSSNITVEFELEKNLEEAANDTRDKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +V+  + +   +++   +       +E S        +++       
Sbjct: 115 ALRSLPQDIDAPPVVSKADADSEPIIT-LTMQSDTRDKLELSDYAENVIGERLQTIPGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP++L     T   +       N               +     
Sbjct: 174 SVQIWGQQRYAMRLWFDPAKLAAYSVTVDDVRAALSAQNVELPSGKIVGANTELTVKTVG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + E                      DI       R                +    
Sbjct: 234 NLSTEKEFE--------------------DIIIKSDSDRIVKFSDVGYAKLQAENLETKM 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V     +       +   +          L   L+          V   N      S   
Sbjct: 274 VSNGKQLVGVAIIPQPGTNYIDIANDFYKLLDQLKEDIPEDITLNVAADNTTFIKQSVIE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV ++++         L     I +++I T  ++ + G ++ + ++  IV
Sbjct: 334 VAETLLISIALVTLIIYFFFRDWGIALRPLLDIPVSLIATFFIMYIFGFSINVLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFFF 480
           L  GL VD  I+V E I ++     S   +   G    +   I  S   A +   V+F  
Sbjct: 394 LATGLVVDDGIVVTENIFKKVEAGMSPIEAALKGSKEIFFAVISISVTLAAVFLPVIFLQ 453

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G   R F + +  ++L+S F ++++   +  ++I+    +       +  F      
Sbjct: 454 GFVGRLFREFGVVIASAVLVSAFVSLTLTPMLNAYLIKGTGHEKSKFYIWTEPFFEKMNS 513

Query: 539 AI-----QFMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                   FM+ ++     + + F +  I            D +  + + V         
Sbjct: 514 GYAKILEHFMKIKWISFPILILCFVVIGIIFGSIKKETAPYDDRSNVNINVTGPEGATFE 573

Query: 593 VVRSNLES 600
            +   ++ 
Sbjct: 574 YMDRYMQE 581



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 91/280 (32%), Gaps = 16/280 (5%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ--- 609
           S          +        +   G +         +  S     ++   +G    Q   
Sbjct: 209 SAQNVELPSGKIVGANTELTVKTVGNLSTEKEFEDIIIKSDSDRIVKFSDVGYAKLQAEN 268

Query: 610 ---NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                      LV +   P        +     K + ++        T  V    +  + 
Sbjct: 269 LETKMVSNGKQLVGVAIIPQPGTNYIDIANDFYKLLDQLKEDIPEDITLNVAADNTTFIK 328

Query: 667 RKGIVG---VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           +  I     ++IS   + + I+  F+ W  AL  +  + + +  T     +FG   N+  
Sbjct: 329 QSVIEVAETLLISIALVTLIIYFFFRDWGIALRPLLDIPVSLIATFFIMYIFGFSINVLT 388

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A++   G  V+D +VV + +    K     +S  +   K   E     +  S+     
Sbjct: 389 LLAIVLATGLVVDDGIVVTENI---FKKVEAGMSPIEAALKGSKEIFFAVISISVTLAAV 445

Query: 783 VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            LP+     + G +   F + +A  ++V+A  S+ +   +
Sbjct: 446 FLPVIFLQGFVGRLFREFGVVIASAVLVSAFVSLTLTPML 485



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 55/146 (37%), Gaps = 12/146 (8%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMR 745
             +      I T+ + +   L    LFG  +N+ +    + LIG    + +++ +   ++R
Sbjct: 876  SFLDPFIIILTVPMAVAGALISLWLFGQTWNIFSQIGTIMLIGLVTKNGILIVEFANQLR 935

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            +        +   + I  S    L   + TS+A  +  LP+A+      +      + + 
Sbjct: 936  EE------GMPKFEAIMHSAESRLRPILMTSLAIALGALPIALSLGAAATSRIGMGVVIV 989

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRA 828
             G + +   ++F+   I       + 
Sbjct: 990  GGTIFSLILTLFVIPAIYYMWSRAKK 1015


>gi|332674350|gb|AEE71167.1| protein-export membrane protein SecD [Helicobacter pylori 83]
          Length = 525

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|327480777|gb|AEA84087.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Pseudomonas
           stutzeri DSM 4166]
          Length = 1056

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 70/617 (11%), Positives = 168/617 (27%), Gaps = 31/617 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G +        Q  +  +P  +P   +                 
Sbjct: 9   KRPIFAAVLSLVILIGGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +N   +V   + 
Sbjct: 55  NPKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTDLDNAQVQVQNRVT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +          ++            +  S        D++   +  
Sbjct: 115 RTMPTLPTEVQRLGVTVDKASPDLTMVVHLTSPDNRYDMLYLSNYAALNVKDELARLDGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++ Q   T   +       N        G      +   Q
Sbjct: 175 GDVQLFGLGNYSLRVWLDPNKVAQRNLTATDVVNAIREQNRQVAAGALGAPPAPGATDFQ 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +    I                 I    +     
Sbjct: 235 LSINTQGRLVDEE-------------EFENIIVRAGEDGEITRLKDIARIELGSSQYALR 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L            +   +     +      A L+          +         GS  
Sbjct: 282 SLLNNQPAVAIPIFQRPGSNAIAISDLVRERMAELKQSFPQGVDYEIVYDPTIFVRGSIE 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ +++I T A++ LLG +L   S+ G+
Sbjct: 342 AVVHTLLEAIVLVVLVVILFLQTWRASIIPLAAVPVSLIGTFAVMHLLGFSLNALSLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +       +S   +           I  + +      +   F 
Sbjct: 402 VLAIGIVVDDAIVVVENVERNIGLGKSPVEATRQAMKEVTGPIIATALVLCAVFIPTAFI 461

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+T+ +S +IS F ++++  A+   +++         + L         
Sbjct: 462 SGLTGQFYQQFALTIAISTVISAFNSLTLSPALAATLLKAHDAPKDGFSRLLDRLFGGWL 521

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                        G   +             +  G+   G +         V     +  
Sbjct: 522 FRPFNRMFDRASHGYVGMVRRILRGSAVALLVYVGLVGLGYMGFATTPTGFVPQQDKQYL 581

Query: 598 LESLQIGDISFQNFDGE 614
           +   Q+ D +  +   +
Sbjct: 582 VAFAQLPDAATLDRTED 598



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/201 (9%), Positives = 67/201 (33%), Gaps = 7/201 (3%)

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
              E   +++ +    + +                  +    +  +   + +  +++ W  
Sbjct: 847  QAEAAMERLLQAELPNGMTYEWTELTYQQILAGNTAVFVFPLCVLLAFLVLAAQYESWSL 906

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I  + + +   +    L G + N+     ++ L+G +  + +++ +  +       
Sbjct: 907  PLAVILIVPMTLLSAITGVILAGSDNNVFTQIGLIVLVGLACKNAILIVEFAKD---KQE 963

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +       ++    L   + TS A  + V+P+ +    G  +  +  + +  G++   
Sbjct: 964  EGMDRLAATLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGMLGVT 1023

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
               + +     L I  +  K 
Sbjct: 1024 FFGLLLTPVFYLVIRAFVEKR 1044



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 58/136 (42%), Gaps = 9/136 (6%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L A+    + +  T     L G   N  ++  ++  IG  V+D +VV + + +N+ L  
Sbjct: 371 PLAAV---PVSLIGTFAVMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIGL-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              S  +   +++ E  G  + T++      +P A      G     FA+ +A   V++A
Sbjct: 426 -GKSPVEATRQAMKEVTGPIIATALVLCAVFIPTAFISGLTGQFYQQFALTIAISTVISA 484

Query: 810 SSSIFIAAPILLFIYD 825
            +S+ ++  +   +  
Sbjct: 485 FNSLTLSPALAATLLK 500


>gi|320104866|ref|YP_004180457.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Isosphaera pallida ATCC 43644]
 gi|319752148|gb|ADV63908.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Isosphaera pallida ATCC 43644]
          Length = 1111

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/600 (12%), Positives = 165/600 (27%), Gaps = 51/600 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++  +G++           + ++P   P               + +    
Sbjct: 9   RPIFASVLSIVLVILGVVS-----YQNLPVAQYPEIAPPT-------------VNVTAIY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +   E +   +     N    I ++FA     +     V  
Sbjct: 51  PGANAQVVADVVATPIEQQINGVENMLYMTSSSGNNGQVSIDVTFALGTDLDFAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    +KL  +  +  +    +    ++            A+  S     +  D +   
Sbjct: 111 RVAIAQAKLPPEVIRQGITVKKKSPSILLTINLYSPDQSRDALYLSNFARTRLYDALARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +   +      +    DP  +     + + +       N        G   + +  
Sbjct: 171 EGVGELTVAGEREYAMRVWLDPGAMASRNLSASDVIQALQEQNVQVAAGALGDPPVPEGV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y +  K  +                 +    +   E G R         I       
Sbjct: 231 EFRYTLSAKGRLLNAE-------------EFERIVLKAEPGGRLTRLGDVARIQLGAKDS 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG------SLPIKLNIVEERN 351
               +L        +       +   T E        LR          P     +    
Sbjct: 278 SQDNLLDGGDSVTLVVYQLPGSNALATAERIRQRMESLRTSPDGESLFPPGVEYAIHYDT 337

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S    +        LV +V+ + +   +  L+   ++ ++++ T A+++ LG +
Sbjct: 338 TIFVKTSIEEVQHALRDAFILVFLVVLVFLQNWRATLIPMIAVPVSLVGTFAVMNGLGFS 397

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNI 468
           L   S+  +VL IG+ VD  I+V E +    +   S   +          A   I    I
Sbjct: 398 LNNLSLLSLVLAIGIVVDDAIVVVENVERNLKLGLSPREASRKAMKEISSALIAIALVLI 457

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKS 522
              + T  +    G   R FA+T+  S  IS F A+++  A+   +        +     
Sbjct: 458 AVFVPTAFMPGIPGQFYRQFALTIAASTAISAFNALTLSPALCRLLLKGHVHDEHGPPPR 517

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            D   L     +     +  +  + +      L        L    +  G+ F G     
Sbjct: 518 RDPLTLLIDLTLGWFFRLFNLGFQGFTAVYVALVRRVVRFSLILLIVYGGLMFLGARVFT 577



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 85/259 (32%), Gaps = 12/259 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                    G +++   A   V L  + +  E +    +S  N     + + R        
Sbjct: 799  FRIDPADVGRLKVRNAAGDMVPLGTLINLREIVGPSLVSHFNIYPAADVIARPAPGVSSG 858

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   +  + +  +                      L         +  + + + +  +F
Sbjct: 859  QAIGLMESIARANLPPGTMGFEWTEIAFQQVTAGNTL----GFVFGLGTLFVFLVLAAQF 914

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W   L  +  + + +   +   AL G++ N+      + L+G +  + +++ + ++  
Sbjct: 915  ESWSLPLSIVLIVPMCLVAGITGVALVGLDNNIFIQIGFVVLVGLAAKNAILIVEFVK-- 972

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
             +L    +  R+ I +     L   + T+ A  + V+P+ + G         PM   +  
Sbjct: 973  -QLQEQGLPRREAIVEGCRLRLRPILMTAFAFILGVVPL-ILGTGAGVEMRYPMGVAVFS 1030

Query: 808  AAS-SSIF--IAAPILLFI 823
                 ++F     P+   +
Sbjct: 1031 GMLGVTLFGLFFTPVFYDV 1049



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/530 (9%), Positives = 132/530 (24%), Gaps = 37/530 (6%)

Query: 3    NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                   L  +I   GL+           L   P       + L + L  G+ L    + 
Sbjct: 552  RRVVRFSLILLIVYGGLMFLGARVFTSVPLGFIPEQDKGYCLLL-VRLPEGASLSRTTEV 610

Query: 63   DDFVNGFL-QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-----SRFKENIADKV- 115
               ++  +    + +         +   +       + ++F          +      V 
Sbjct: 611  MRRLDKIVRTNPAIDHTIGFSGLSVASNATIPNYGTLFVTFKPFEERAGMAEAKAIQLVA 670

Query: 116  --TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
                 L+     + +      +          +  Q+     +         I+      
Sbjct: 671  WIEEQLRDFEDAIVLVANAPPVEGLGTTGGLRMQVQDIGGVGLDQLQGSVETILD----- 725

Query: 174  IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
               +E  +Q L +     Q     +  R +              L       ++    +L
Sbjct: 726  AARAEPRLQGLYTGFRNDQPQYFIEVDREKAKALQVPLNQVFGTLQTYLGSSYVNDFTYL 785

Query: 234  RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
              +   +   + +  I    +             P+  +                     
Sbjct: 786  NRNWQVKVQADAEFRIDPADVGRLKVRNAAGDMVPLGTLINLRE-------------IVG 832

Query: 294  LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             ++V    +  A  +      G +       +E+                    ++   G
Sbjct: 833  PSLVSHFNIYPAADVIARPAPGVSSGQAIGLMESIARANLPPGTMGFEWTEIAFQQVTAG 892

Query: 354  ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
              LG          +    V +VL          L     + + ++  +  ++L+G    
Sbjct: 893  NTLGFVFG------LGTLFVFLVLAAQFESWSLPLSIVLIVPMCLVAGITGVALVGLDNN 946

Query: 414  LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            +    G V+ +GLA  + IL+ E +++   +      ++  G       I  +    ++ 
Sbjct: 947  IFIQIGFVVLVGLAAKNAILIVEFVKQLQEQGLPRREAIVEGCRLRLRPILMTAFAFILG 1006

Query: 474  TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             V L      G        + +   +L      +         I+ + + 
Sbjct: 1007 VVPLILGTGAGVEMRYPMGVAVFSGMLGVTLFGLFFTPVFYDVIVGFTEW 1056


>gi|217033847|ref|ZP_03439272.1| hypothetical protein HP9810_877g51 [Helicobacter pylori 98-10]
 gi|216943745|gb|EEC23188.1| hypothetical protein HP9810_877g51 [Helicobacter pylori 98-10]
          Length = 525

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 274/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++      G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICALLFGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|161353436|ref|NP_208341.2| preprotein translocase subunit SecD [Helicobacter pylori 26695]
          Length = 525

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNARLIVFIGALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSNLEGISFELLDEDEAKKLDALL----- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L +       +       S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 106 -----LELQGHSQFEIKKEAGFYSVNLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKDLISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DS+     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSVKTSIIALVGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ ++  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSVKTSIIALVGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|301161697|emb|CBW21237.1| putative AcrB/AcrD/AcrF family efflux transporter [Bacteroides
           fragilis 638R]
          Length = 1011

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/687 (12%), Positives = 186/687 (27%), Gaps = 53/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   GL+           +  +PS                        
Sbjct: 9   RRPVLSTVLTIIILLFGLI-----GYNYLGVREYPSVDNPII---------SVSCSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +          +Q Q++IT+ F  S   E  A+ V   +  
Sbjct: 55  NADVIENQITEPLEQNINGIPGIRSLSSVSQQGQSRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I++     D      +E S        +Q+       
Sbjct: 115 AQRYLPRDCDPPTVSKADADATPILMVALQSD--KRSLLELSEIADLTVKEQLQTISDVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P ++     T   +       N               +     
Sbjct: 173 SVSIWGEKRYSMRLWLAPIKMSGYGITPIDVKNAVDKENVELPSGSIEGNTTELTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L                      T +   ++   E   R              A +    
Sbjct: 233 L--------------------MHTAEEFNNLIVKEENDRIIRFSDIGRAELGPADIKSYM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +   +   +   +     +        ++              N      S S 
Sbjct: 273 KMNGVPMVGIVVIPQPGANHIKIADAVYERMEKMQKDLPEDVKYSYGFDNTKFIRASISE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+I++F+ +   +  LV    I +++I    ++ L   ++ + S+  +V
Sbjct: 333 VKETVYVAFILVIIIIFLFLRDWRVTLVPCIVIPVSLIGAFFVMYLADFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     K      +   G    +  +  + IT +     + F  
Sbjct: 393 LAVGLVVDDAIVMTENIYVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFME 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI----NPLSRFFLI 534
           G      R F+I +  S++IS F A++    +   ++  ++ ++               +
Sbjct: 453 GMTGRLFREFSIVISGSVIISSFAALTFTPMLATKLLVKREKQNWFYLKTEPFFEGMNRL 512

Query: 535 PDCIAIQFMRARFWGVGISILFS-ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  F+  R+  +    +   I +    +       ++ +  I +       V    
Sbjct: 513 YSRSLAVFLHKRWIALPFVAITIGIIAFLWNYIPAEMAPLEDRSQISINTRGAEGVTYEY 572

Query: 594 VRSNLESLQIGDISFQN---------FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R   E +     S              G  N  + L+        Q  V E +   + +
Sbjct: 573 IRDYTEDINDLVDSIIPDAESVTARVSSGSGNVRITLKDMKDRDYTQMDVAEKLSAAVQK 632

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIV 671
                +              +  + ++
Sbjct: 633 KTMARSFVQQSSSFGGRRGGMPVQYVL 659



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/198 (18%), Positives = 78/198 (39%), Gaps = 7/198 (3%)

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
              KI +     T +       K  RE     +   I++ + + + +  +F+ +   L  +
Sbjct: 815  MDKIAKETLDDTFRTALTGDSKEYRESSSSLMFAFILAIVLIYLILAAQFESFKDPLIIM 874

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             T+ L I   L F    GI  N+ +   ++ LIG    + +++ +    N+K   T    
Sbjct: 875  LTVPLAIAGALVFMYFGGITMNIFSQIGIIMLIGLVAKNGILIVE--FANLKQ-ETGEDK 931

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIF 814
               I  +  + L   + TS +  + ++P+A   G            +  G++V+   +++
Sbjct: 932  MTAIKDAALQRLRPILMTSASTILGLIPLAFASGEGCNQRIAMGTAVVGGMLVSTLLTMY 991

Query: 815  IAAPILLFIYDWRAKNAR 832
            I   I  +I   R+   +
Sbjct: 992  IVPAIYSYISTNRSNKLK 1009



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +        L     N+ ++ AV+  +G  V+D +V+ + +   
Sbjct: 353 RDWRVTLVPCIVIPVSLIGAFFVMYLADFSINVLSMLAVVLAVGLVVDDAIVMTENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +  ++   +   E     + T++       P+    G        F+I ++  
Sbjct: 410 YVRIEKGMPPKEAGIEGAKEIFFAVISTTITLVAVFFPIVFMEGMTGRLFREFSIVISGS 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++++ +++     +   +   R K  
Sbjct: 470 VIISSFAALTFTPMLATKLLVKREKQN 496


>gi|254558888|ref|YP_003065983.1| hydrophobe/Amphiphile Efflux-1 protein [Methylobacterium extorquens
           DM4]
 gi|254266166|emb|CAX21921.1| Hydrophobe/Amphiphile Efflux-1 (HAE1) [Methylobacterium extorquens
           DM4]
          Length = 1042

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/683 (12%), Positives = 187/683 (27%), Gaps = 38/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC  GLL      LP   + ++P   P + I++     G S   L    
Sbjct: 8   RPIFAWVVAIFICLGGLLA-----LPFLPVAQYPVIAPPS-IAISTVYPGASTQNLYYSV 61

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   L   ++ L            S    + +I  +F         A  V   ++ +
Sbjct: 62  TRLIEEELNGAANIL-------NYESTSDTTGEVEIVANFRPGTDIALAAVDVQNRIKRI 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    ++  +         +              +       R  + ++       +
Sbjct: 115 EPRLPEAVRQQGIQVVEASSAILQFVTLTSPDSSLDEVGLGDVATRYVLPELRRLPGVGR 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  T   +       N      + G      ++  Q +
Sbjct: 175 ARLF-STERAMRIWLDPDKMLGLSLTAGDVEAAIRAQNAQVSSGLLGTPPSPVTERTQNM 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V  K ++                 +    +                 I            
Sbjct: 234 VLVKGQLEA-------------PEEFGAIVLRANPDGSTVRLADVARIEVGGLSYAFSTR 280

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L              + +   T E        L A   P     V          S    
Sbjct: 281 LNGKPAAAVAVQLAPRGNALATAEAVKTRMGQLAAFFPPGVTYEVSYDVTPVIRASVKKV 340

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T A   GLV +V+F+ +   ++ L+    + + ++ T  +L  LG ++ + ++ G+VL
Sbjct: 341 LLTLAEAVGLVFLVMFLFLQNIRYTLIPTIVVPIALLGTCVVLLWLGFSINVLTMFGMVL 400

Query: 423 GIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +      + +   S+    +    +  +   V + FF 
Sbjct: 401 AIGILVDDAIVVVENVERIMAEEGLPPREATEKAMSQITGAVIGITLVLMAVFVPMAFFP 460

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRF 531
           G      + F+ +M LSI  S F A+S+  A+   +         + K            
Sbjct: 461 GSVGIMYQQFSASMVLSIGFSAFLALSLTPALCATLLKPVEKGHGHAKRGFFGWFNHRLG 520

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L      +        G  + +  ++ +        L  G          +        
Sbjct: 521 RLTRGYGRVTGWMVARVGRFMLLYLALLAGLGYAMWRLPSGFVPVDDQGFVMADLLAPSD 580

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +     L+ ++  +       G         +      A T    +  K  ++     + 
Sbjct: 581 ASASRTLDVVRAVEDRMARTPGVDKVTFITGFSFYGQGAMTGQAFVTLKDWSKRGADQSA 640

Query: 652 QNTEIVGPKISRELIRKGIVGVI 674
           +            L    +  + 
Sbjct: 641 EAIISGSNAAFARLRDAEVSALA 663



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V            S +        +       G+++A    ++    ++    P 
Sbjct: 260 VRLADVARIEVGGLSYAFSTRLNGKPAAAVAVQLAPRGNALATAEAVKTRMGQLAAFFPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                       + R  ++K ++ +  +   + + +++  +   + L     + + +  T
Sbjct: 320 GVTYEVSYDVTPVIRASVKKVLLTLAEAVGLVFLVMFLFLQNIRYTLIPTIVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  V+D +VV + +     +    +  R+  +K++++
Sbjct: 380 CVVLLWLGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPREATEKAMSQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GSV      F+  M   I  +A  ++ +   +   + 
Sbjct: 438 ITGAVIGITLVLMAVFVPMAFFPGSVGIMYQQFSASMVLSIGFSAFLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 84/244 (34%), Gaps = 13/244 (5%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
                L   A       V  S+   +       Q         VRL  +P  S      L 
Sbjct: 778  PEDLLTYSARNSAGAMVPFSSFARVAWVTGPTQVVGFNGYPAVRLTGEPAPSYTSGDALA 837

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFA 693
             +++ +     L      E  G  +  +L        ++    + +++    +   W   
Sbjct: 838  EMERLM---GMLPAGFGYEWTGQSLQEKLA-GSQAAFLLGLSILFVFLCLAALYESWAIP 893

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  +  + L I  ++    L G+  ++     ++T+IG S  + +++ +  +    L   
Sbjct: 894  LSVMLVVPLGIVGSVAAAYLRGLPNDVYFTVGLITIIGLSAKNAILIIEFAKDLRAL--- 950

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVIGSFAIPMAF--GIVVAAS 810
                 +   ++        + TS+A  + V+P+ +  G S +   A+      G++ A  
Sbjct: 951  GKPLVEATLEAAELRFRPILMTSLAFILGVVPLVIASGASAMSQQALGTGVLGGMITATV 1010

Query: 811  SSIF 814
             ++F
Sbjct: 1011 LAVF 1014


>gi|218258344|ref|ZP_03474746.1| hypothetical protein PRABACTJOHN_00401 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225536|gb|EEC98186.1| hypothetical protein PRABACTJOHN_00401 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1011

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/679 (10%), Positives = 183/679 (26%), Gaps = 44/679 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  ++   G++           +  FPS                 ++     
Sbjct: 10  KRPVLSTVMTIILLLFGMI-----GYKFLGVREFPSVDNPII---------SVNVTYPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +           Q   +IT+ F  S   E  A+ V   +  
Sbjct: 56  NAEVIMNQITEPLEQNINGIPGIRSLSSVSSQGSCRITVEFELSVDLETAANDVRDKVSR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I+     I       +E S        +++    +  
Sbjct: 116 AQRYLPRDCDPPTVSKADADATPIMQI--GIRSSKRSLMELSEIAELTVKERLQTIPNVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP ++     T   +       N            +  S     
Sbjct: 174 GVDIWGQKRYSMRLWLDPIKMAGYGVTPLDVKNAVDAENVELPSGSIEGNTIDLSIRTLG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+    E                      D+     G                  +    
Sbjct: 234 LMHTATEF--------------------NDLIIKRDGDNIIRFQDVGRAEVSPEDLRSVM 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   +   +   +     + A      L+          +   N      S + 
Sbjct: 274 RKNGEPMVIDVIIPQPGANQIEIADEAYQRIEQLKKDLPEDVTVEMVYDNTRFIRASIAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++++F+ +   +  LV    I ++++    ++ + G ++ + ++  +V
Sbjct: 334 VEETIYVAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYVSGFSINVLTMLAVV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +      +   G    +  +  + +T +   + + F  
Sbjct: 394 LSVGLVVDDAIVMAENIYVRIEQGMEPKEAGIDGAKEIFFAVVSTTVTLVSVFLPIVFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + F+I +  S+ IS F A++    +   ++R ++ K         FF   + I
Sbjct: 454 GMTGRLFKEFSIVIAGSVTISSFVALTFTPMLATKLLRKRENKGWLYTKTEPFFEGMNNI 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNY-----GIDFKGGIQLGVLANRPVDLSV 593
             + + A       SI   +     +             ++ +  I + + A        
Sbjct: 514 YAKSLNAFLNHKWWSIPIVVILFGSIGYFWRTIRSELSPLEDRSSISINIRAQEGATFEF 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R   + +     +                     +          +     V    ++ 
Sbjct: 574 IRDFTDQVAAMADTLAPERQALTVRANNSNGYITILLPDIKDRERSQMEIADVLSKNVRG 633

Query: 654 TEIVGPKISRELIRKGIVG 672
                  + ++    G   
Sbjct: 634 KTEARAFVQQQSTFGGRRA 652



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 71/165 (43%), Gaps = 7/165 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  +I++   + + +  +F+ +   L  + T+ L I   L F +  G+  N+ +   ++ 
Sbjct: 847  MFAMILALFMIYLVLAAQFESFKDPLVVMFTVPLAIAGALIFMSYSGVTMNIFSQIGIIM 906

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +     +S  + I  +  + L   + TS++  + ++P+  
Sbjct: 907  LIGLVAKNGILIVEFAN---QRQEAGLSMAEAIRSASTQRLRPILMTSISTILGLVPLVY 963

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              G          I +  G++V+   ++FI   +  FI   R K 
Sbjct: 964  ASGEGAQGRIAMGIAVVGGMIVSTFLTLFIVPAMYSFISTDRRKK 1008



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 78/244 (31%), Gaps = 6/244 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R+ +    +  +  +N +     ++  Q             + +++   ++    T
Sbjct: 257 QDVGRAEVSPEDLRSVMRKNGEPMVIDVIIPQPGANQIEIADEAYQRIEQLKKDLPEDVT 316

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           ++        I   +        +   + +LI       W   L  +  + + +      
Sbjct: 317 VEMVYDNTRFIRASIAEVEETIYVAFLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFV 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G   N+  + AV+  +G  V+D +V+ + +          +  ++       E   
Sbjct: 377 MYVSGFSINVLTMLAVVLSVGLVVDDAIVMAENI---YVRIEQGMEPKEAGIDGAKEIFF 433

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V T++      LP+    G        F+I +A  + +++  ++     +   +   R
Sbjct: 434 AVVSTTVTLVSVFLPIVFMEGMTGRLFKEFSIVIAGSVTISSFVALTFTPMLATKLLRKR 493

Query: 828 AKNA 831
               
Sbjct: 494 ENKG 497


>gi|238926095|gb|ACR78462.1| RND family multidrug efflux permease protein OqxB [Klebsiella
           pneumoniae]
          Length = 1050

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 149/550 (27%), Gaps = 35/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++           ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPGGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPQESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +S +IS   ++++  A+   +++    K      L        
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAALLLKPHGAKKDLPTRLIDRLFGWI 520

Query: 537 CIAIQFMRAR 546
                    R
Sbjct: 521 FRPFNRFFLR 530



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     +   +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRRKPV 1044



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 89/266 (33%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+      ++ +   P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMAEL-ATRFPEDMQWAAPYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                   + +L+ I     W  ++  +  + + +  T     L G   N  ++  ++  
Sbjct: 345 QTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLAAAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487


>gi|217031690|ref|ZP_03437194.1| hypothetical protein HPB128_155g3 [Helicobacter pylori B128]
 gi|298737169|ref|YP_003729699.1| preprotein translocase subunit SecD [Helicobacter pylori B8]
 gi|216946537|gb|EEC25137.1| hypothetical protein HPB128_155g3 [Helicobacter pylori B128]
 gi|298356363|emb|CBI67235.1| preprotein translocase SecD subunit [Helicobacter pylori B8]
          Length = 525

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 155/544 (28%), Positives = 276/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNSRLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALL----- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L +       +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 106 -----LELQGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKDLISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DS+     A++ G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSVKTSIIALIGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ ++  I+ +I   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSVKTSIIALIGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|154492751|ref|ZP_02032377.1| hypothetical protein PARMER_02390 [Parabacteroides merdae ATCC
           43184]
 gi|154087056|gb|EDN86101.1| hypothetical protein PARMER_02390 [Parabacteroides merdae ATCC
           43184]
          Length = 1050

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 72/619 (11%), Positives = 178/619 (28%), Gaps = 46/619 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GLL           + +FP  +P +                   
Sbjct: 7   RRPILSGVISVVIVFLGLLAI-----TSLPITQFPDIVPPSVT---------VTARYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D +   +    +   + +                +T + F      +  +  V   + 
Sbjct: 53  NADVMAKTVATPLERAINGVPGMTYMTTVCTNDGMSLTTIYFKVGTDPDVASVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  ++T  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVITEKEVNSMLMYLNIMSTDSSHTEKFVYNFADINILRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P+RL     +  +++      N        G+   +     Q
Sbjct: 173 GFVEIMGSRDYAMRVWLNPNRLAAYNMSPQEVTAAIRSQNIEAAPGKTGISSDKIPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++              +       +    +                 I          
Sbjct: 233 YVLQ-------------YSGKFSTPEEYGEIVLKALPDGSVLRLKDVATIEFDSEDYNMI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSD 359
            +         +   +   +    I+        ++ +   P     +          S 
Sbjct: 280 SMTDGKPSASIMIKQRPGSNAREVIQNIKAKMEEIKESSFAPGMDYNISYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S+   T      LV IV+++ +   +  L+   ++ ++++ T   + +LG ++ + ++  
Sbjct: 340 SVVLRTLLEAFLLVFIVVYLFLQDFRSTLIPAIAVPVSLVGTFFFMQMLGFSINMLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +VL IG+ VD+ I+V E +  +    +        +       A   I        +   
Sbjct: 400 LVLAIGIVVDNAIVVVEAVHVKMHNEKLPPAKATEAAIREIGGAIIAITLVMSAVFVPVG 459

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSI------- 523
            +    G   R F++T+ ++I+IS   A+++  A+   +        K  KS+       
Sbjct: 460 FMSGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALMLKPVSHDKKVKKSLLARFFDG 519

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID-FKGGIQLG 582
                             F+  RF      I+F + +  + F     +  +  +G I + 
Sbjct: 520 FNKRYDHLERRYKINLRLFLNRRFLTYASLIIFCLATWGMTFVLPSGFIPNEDQGMIYVN 579

Query: 583 VLANRPVDLSVVRSNLESL 601
           V A     L    + L  +
Sbjct: 580 VDAPPGATLERSEAALSKV 598



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +S     IS  +     + +++ +           +   +++            N   
Sbjct: 270 EFDSEDYNMISMTDGKPSASIMIKQRPGSNAREVIQNIKAKMEEIKESSFAPGMDYNISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I   +  ++ + + + I +++    +   L     + + +  T  F  + G
Sbjct: 330 DVSRFLDASISVVLRTLLEAFLLVFIVVYLFLQDFRSTLIPAIAVPVSLVGTFFFMQMLG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+  + A++  IG  V++ +VV + +   +K++   +      + +I E  G  +  
Sbjct: 390 FSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHNEKLPPAKATEAAIREIGGAIIAI 447

Query: 776 SMAAFISVL-PMAVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++      +    + G   I    F++ +A  IV++  +++ ++  +   +    + + +
Sbjct: 448 TLVMSAVFVPVGFMSGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALMLKPVSHDKK 507

Query: 833 I 833
           +
Sbjct: 508 V 508



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 16/230 (6%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              + +          A         + + EI      +  +I    ++RE    G   ++
Sbjct: 817  TRYNLFTSAMITGEQAPGVSSGEALEAVEEIAAEVLPRGYDIEWSGVAREEKESGGQSLV 876

Query: 675  I-SAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I +   + +Y+ +          L  I +L   +  +       G+E N+ A  A++ LI
Sbjct: 877  IFAICLVFVYLLLAAQYESLLLPLPVILSLPAGVFGSFLLLYAVGLENNIYAQVALVMLI 936

Query: 731  GYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            G    + +++     +         +S      +     L   + TS A    ++P+AV 
Sbjct: 937  GLLGKNAILII----EVANQCRKEGVSIMGAAIQGATSRLRPILMTSFAFISGLIPLAVA 992

Query: 789  WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYD----WRAKNAR 832
             G   +   S     A G+++     IF+   + +         + K  +
Sbjct: 993  SGAGALGNRSIGTAAAGGMLIGTFVGIFLIPGLYVIFESLATYLKEKKQK 1042


>gi|254235492|ref|ZP_04928815.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexF [Pseudomonas aeruginosa C3719]
 gi|126167423|gb|EAZ52934.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexF [Pseudomonas aeruginosa C3719]
          Length = 1063

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/609 (11%), Positives = 163/609 (26%), Gaps = 32/609 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G +        Q  +  +P  +P   +                 
Sbjct: 9   QRPIFAAVLSLLILIGGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +N   +V   + 
Sbjct: 55  NPKVIGETVASPLEQAITGVENMLYMSSQSTSDGKLTLTITFALGTDLDNAQVQVQNRVT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               KL  +  +  +          ++            +  S   +    D++   +  
Sbjct: 115 RTEPKLPEEVTRLGITVDKASPDLTMVVHLTSPDNRYDMLYLSNYAVLNVKDELARLDGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++     T   +       N        G          Q
Sbjct: 175 GDVQLFGLGDYSLRVWLDPNKVASRNLTATDVVNAIREQNRQVAAGTLGAPPAPSDTSFQ 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +                 +    I                 +          
Sbjct: 235 LSINTQGRLVTEE-------------EFENIIIRAGANGEITRLRDIARVELGSNQYALR 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L            +   +            A L+          +         GS  
Sbjct: 282 SLLNNKPAVAIPIFQRPGSNAIEISNLVREKMAELKHSFPQGMDYSIVYDPTIFVRGSIE 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ +++I T A++ +LG +L   S+ G+
Sbjct: 342 AVVHTLFEALVLVVLVVILFLQTWRASIIPLAAVPVSLIGTFAVMHMLGFSLNALSLFGL 401

Query: 421 VLGIGLAVDSNILVN-ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V  ER  +   + Q+ + +           I  + +      +   F
Sbjct: 402 VLAIGIVVDDAIVVVGERRAQHRPRPQAGWEATKRAMREVTGPIIATALVLCAVFIPTAF 461

Query: 480 F---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R FA+T+ +S +IS F ++++  A+   +++         +      L   
Sbjct: 462 ISGLTGQFYRQFALTIAISTVISAFNSLTLSPALAAVLLKGHHEPKDRFSVFLDKLLGSW 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                         G     +           +  G+               V     + 
Sbjct: 522 LFRPFNRFFDRASHGYVGTVNRVLRGSSIALLVYGGLMVLTYFGFSSTPTGFVPQQDKQY 581

Query: 597 NLESLQIGD 605
            +   Q+ D
Sbjct: 582 LVAFAQLPD 590



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 69/237 (29%), Gaps = 9/237 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      D            L         S      +E + K+               
Sbjct: 817  KVSDTSGPDRVMHYNGFITAELNGAPAAGYSSGQAQAAIEKLLKEELPNGMTYEWTELTY 876

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                     +    V  +   +A L+       W   L  I  + + +   +    L G 
Sbjct: 877  QQILAGNTAL---FVFPLCVLLAFLVLAAQYESWSLPLAVILIVPMTLLSAITGVILAGS 933

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            + N+     ++ L+G +  + +++ +  +         +     + ++    L   + TS
Sbjct: 934  DNNIFTQIGLIVLVGLACKNAILIVEFAKD---KQEEGMDRVAAVLEACRLRLRPILMTS 990

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +A  + V+P+ +    G  +  +  + +  G++      + +     + I  +    
Sbjct: 991  IAFIMGVVPLVISTGAGAEMRHAMGVAVFSGMIGVTFFGLLLTPVFYVLIRRFVENR 1047



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 53/149 (35%), Gaps = 10/149 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     + G   N  ++  ++  IG  V         +    +
Sbjct: 365 WRASIIPLAAVPVSLIGTFAVMHMLGFSLNALSLFGLVLAIGIVV----DDAIVVVGERR 420

Query: 750 LYTTSISFR--DLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFG 804
                      +   +++ E  G  + T++      +P   + G  G     FA+ +A  
Sbjct: 421 AQHRPRPQAGWEATKRAMREVTGPIIATALVLCAVFIPTAFISGLTGQFYRQFALTIAIS 480

Query: 805 IVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
            V++A +S+ ++  +  + +        R
Sbjct: 481 TVISAFNSLTLSPALAAVLLKGHHEPKDR 509


>gi|317011775|gb|ADU85522.1| preprotein translocase subunit SecD [Helicobacter pylori
           SouthAfrica7]
          Length = 526

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 154/545 (28%), Positives = 273/545 (50%), Gaps = 31/545 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNARLIVFIFALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     ++    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGVSFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVRLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPI 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGREEISVQLPGIKTLEEERRAKDLISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A++ G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALIGGFILVMGFMVLYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+ + V  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLREGEGVAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIIGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFLI 534
                
Sbjct: 521 VKNKR 525



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ +I   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALIGGFILVMGFMVLYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRE---GEGVAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+ + +  +G   I  FA+    GI+ +  ++I
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAI 495


>gi|224532227|ref|ZP_03672859.1| protein-export membrane protein SecF [Borrelia valaisiana VS116]
 gi|224511692|gb|EEF82098.1| protein-export membrane protein SecF [Borrelia valaisiana VS116]
          Length = 299

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 138/300 (46%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +   I      +    V + +          +  G N+GIDF   + + +   +      
Sbjct: 1   MQRVINFSKYGSNVLIVSVILTLIGLIYTFFYHGGYNWGIDFSSRVNINLSIEKSDIKEN 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
               + S     +  ++                  +        V+K I + +  +   N
Sbjct: 61  EIKRIFSPIYKTLDVKSIFSPDENKSEFSIMVKSDIIDYAFKTEVQKTIMDELKKAFNAN 120

Query: 654 TEI-----VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            E+     +    S  L  K I  V+ +   +LIYI +RFK  +A+ +I ++  DI   +
Sbjct: 121 IEVLDSYFIDSSFSSTLRIKSIFLVLGTFTLILIYIALRFKLSYAIASILSIFHDIFFIV 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  +F IE N   + A+LT+IGYS+ND ++++DR+R N+K   T  +F ++++ SI++T
Sbjct: 181 AFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRL-TDNAFLNILNISISQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R+V TS+  F++V  + V+    I  F++    G++V   SS+FIA+PILL +Y    
Sbjct: 240 LSRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLKLYKKIK 299


>gi|83749140|ref|ZP_00946144.1| MexD [Ralstonia solanacearum UW551]
 gi|83724199|gb|EAP71373.1| MexD [Ralstonia solanacearum UW551]
          Length = 1049

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/559 (11%), Positives = 154/559 (27%), Gaps = 41/559 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I  +G++       P+  + R+PS  P               + L   
Sbjct: 7   QRPVFAWVIALFIILLGVIAI-----PKLPIARYPSVAPPT-------------VNLSAT 48

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            S       I  +F            V 
Sbjct: 49  YPGATPQTMNDGVISLIERELSSVKNLLYFESSSDTSGSASIIATFKPGTDPAMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ +  +L    ++N L   +     +++     +         S  + R  ++++  
Sbjct: 109 NKLKAIEPRLPQVVRQNGLTVESASSGFLMIIGLQSNDGRFDETALSDYMARNVVEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     +   +S      N        G      +
Sbjct: 169 IEGVGRVQLFGA-EQAMRIWVDPAKLIAYGLSMNDLSAAVSQQNAQIAPGSVGASPALPA 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +        +        +      
Sbjct: 228 QRVTVPLTVQGQLT-------------SPEQFAAIVLRANANGSKVVMGDVARVELGAQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T E      A L           +         
Sbjct: 275 YGFINRENGKAATAAAVQLAPGANAVRTAEGVQARMAELSKTMPAGMSYSIPLNTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+++ +   ++ L+      + ++ T  ++   G ++ + +
Sbjct: 335 ISIEKVIQTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALLGTFTIMLASGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G+VL IG+ VD  I+V E +     ++  S   +           +    +      +
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERLMAQEGLSPRDATIKAMKEITGAVIGITLVLTAVFI 454

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +    G      + F ++M +SIL S F A+++  A+   +++       +      +F
Sbjct: 455 PMALASGSVGVIYQQFTLSMAVSILFSAFLALTLTPALCATLLQPVDPAHHEKRGFFGWF 514

Query: 533 LIPDCIAIQFMRARFWGVG 551
                   Q   +R   + 
Sbjct: 515 NRRFDRITQGYASRVATLV 533



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 89/241 (36%), Gaps = 14/241 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V       Q      +                 ++V     ++    ++++ +
Sbjct: 258 SKVVMGDVARVELGAQSYGFINRENGKAATAAAVQLAPGANAVRTAEGVQARMAELSKTM 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLI 701
           P     +  +      +  I K I  +I + + + + +++     R+    A+ A   L+
Sbjct: 318 PAGMSYSIPLNTAPFVKISIEKVIQTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPIALL 377

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              T  L      G   N+  +  ++  IG  V+D +VV + +     +    +S RD  
Sbjct: 378 GTFTIMLA----SGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERLMAQEGLSPRDAT 431

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            K++ E  G  +  ++      +PMA+  GSV      F + MA  I+ +A  ++ +   
Sbjct: 432 IKAMKEITGAVIGITLVLTAVFIPMALASGSVGVIYQQFTLSMAVSILFSAFLALTLTPA 491

Query: 819 I 819
           +
Sbjct: 492 L 492



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 61/150 (40%), Gaps = 7/150 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L +   +    L G+  ++     +
Sbjct: 865  QAPLLMALSMLVVFLVLAALYESWAIPLSVMLVVPLGLLGAVLAVLLRGMPNDVFFKVGM 924

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  +   +L        +    +    L   + TS+A  + V+P+
Sbjct: 925  ITVIGLSAKNAILIVEFAK---QLREQGKGLAESAVTAARLRLRPILMTSLAFGLGVVPL 981

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSI 813
             +  G       +    +  G+V A   +I
Sbjct: 982  MIAMGASAETQHAIGTGVFGGMVSATVLAI 1011


>gi|306836236|ref|ZP_07469219.1| protein-export membrane protein SecF [Corynebacterium accolens ATCC
           49726]
 gi|304567890|gb|EFM43472.1| protein-export membrane protein SecF [Corynebacterium accolens ATCC
           49726]
          Length = 390

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 130/319 (40%), Gaps = 11/319 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L  D     F+        I+    + +I  +   G    +DF+GG  L +
Sbjct: 6   KHKISRLDRLYEDERGYDFIGHTKRWYAITAALLVGAIAAILIRGFTLSLDFEGGTTLSM 65

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A    +  V     +S  +     +      +  + +  +             + ++  
Sbjct: 66  PAGDLKEDEVATVFEDSTGVEPEQVRIVGAGDSETLEITSERLSQEEVDSARSAIYEEFQ 125

Query: 644 EIVPL----STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                         +  V       + ++ I+ +++  +A  IY+ +R +   A  AI+ 
Sbjct: 126 PKDENGEATPDAIGSSTVSESWGSSITQRMILAMVVFLVAATIYVAVRLQKIMAFAAISA 185

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISF 757
           LI+D     G +ALFG E +   +  +LT++ +S+ D V+V+D++ +N        S ++
Sbjct: 186 LIIDGIVIAGIYALFGFEVSPAVIIGLLTVLTFSIYDSVIVFDKVNENTAGLEGQRSKTY 245

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSS 812
            +L + +IN+T+ RS+ TS+ + + ++ + V      G   +   A+    G++    SS
Sbjct: 246 GELANLAINQTVMRSISTSIISALPIIALFVIAVWLMGIGTLRDLALIQLIGVIEGIFSS 305

Query: 813 IFIAAPILLFIYDWRAKNA 831
           IF+A P+++   +W  +  
Sbjct: 306 IFLATPLVVTFANWTKRVK 324


>gi|71276371|ref|ZP_00652648.1| SecD/SecF/SecDF export membrane protein [Xylella fastidiosa Dixon]
 gi|71898646|ref|ZP_00680816.1| SecD/SecF/SecDF export membrane protein [Xylella fastidiosa Ann-1]
 gi|170729424|ref|YP_001774857.1| preprotein translocase subunit SecF [Xylella fastidiosa M12]
 gi|71162833|gb|EAO12558.1| SecD/SecF/SecDF export membrane protein [Xylella fastidiosa Dixon]
 gi|71731593|gb|EAO33654.1| SecD/SecF/SecDF export membrane protein [Xylella fastidiosa Ann-1]
 gi|167964217|gb|ACA11227.1| protein-export membrane protein SecF [Xylella fastidiosa M12]
          Length = 321

 Score =  169 bits (428), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 86/275 (31%), Positives = 148/275 (53%), Gaps = 4/275 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIP+   I FMR R   + +  +    ++ ++   G NY ++F GG  +     +PVD 
Sbjct: 7   HLIPNDTKIDFMRWRKPTLSLMSILFAIAVLVVVFKGFNYALEFTGGTLVRTQFAKPVDA 66

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQY--QPGDSVAQTRVLEMVKKKITEIVPLS 649
             VR  LE   +G+   Q+  G    L+RLQ   +  +        E V+K IT     +
Sbjct: 67  DQVRQRLEVGGLGNAQVQSVGGGNELLIRLQPYGEHNNDDVAKNAAEAVRKVITLPDNPA 126

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           T+Q  E VGP++ ++L   G+   I   +  LIYI  RF+W FA+ A  T   D+  T+ 
Sbjct: 127 TVQPGEFVGPQVGKDLAMNGVYATIFMLLGFLIYIGFRFEWKFAVAASLTAFFDLILTIA 186

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           + +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   +++++SIN+TL
Sbjct: 187 YMSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSL--RVEPLEVLNRSINQTL 244

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            R+V T++  F+S   + ++GG  +   A     G
Sbjct: 245 SRTVITAVMFFLSAFALYLYGGRSMEGLAETHMAG 279


>gi|90411266|ref|ZP_01219278.1| probable multidrug efflux system transmembrane protein
           [Photobacterium profundum 3TCK]
 gi|90327795|gb|EAS44126.1| probable multidrug efflux system transmembrane protein
           [Photobacterium profundum 3TCK]
          Length = 1039

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/697 (10%), Positives = 190/697 (27%), Gaps = 54/697 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++       P   ++RFPS  P +            +L      
Sbjct: 8   RPIFAWVIAILIILSGVISI-----PNLAVERFPSVAPPSV---------SLYLTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +N  +    +   S +K       S       +IT +F +    E    ++   L+ 
Sbjct: 54  PQTLNDSVVSLIEREISGVKGLMYFKSSSDSTGSAEITATFENGINPELAQVEIQNKLKA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L +  +++ +   +    +++              E S  +IR  ++++       
Sbjct: 114 IEARLPLSVRQSGIQVESSSSSTLMYVGLISPNGEYTESELSDYMIRNIVEELKRIPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +P +L     T + ++      N        G   +        
Sbjct: 174 RIQMFGA-EFAMRIWINPIQLNAFNLTVSDVAKAIQEQNVQISPGKVGDAPISQGQKTVV 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 PLTAQGQL-------------ETPEEFRNIVLRSTPNGGSVLLGDVAEVELGSQNYQYSN 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +              L+          +          S + 
Sbjct: 280 RENGQPSTSASVKLSPGANAISASNGIRSRLDELKQAMPAGIDYTITSDAAPFAKISITK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+++ +   ++ ++      + ++ T  ++ +LG ++ + S+ G+V
Sbjct: 340 VIVTLAEAMVLVFLVMYLFLQNVRYTVIPAIVAPIALLGTFTVMLMLGFSINVFSMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +    +    S   +  +     YS +           + + F 
Sbjct: 400 LAIGIIVDDAIVVVENVERVISETGVSAKKATQVAMKDIYSALVGITAVLSAVFIPMAFA 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
            G      + F++ M +SIL S F A+++  A+   I          +       +    
Sbjct: 460 AGSVGIIFQQFSLAMSVSILFSAFLALTLTPALCATILKPHSETHEHKRGFFGWFNRCFE 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +A   +R     V       +               + +G     +     
Sbjct: 520 RLTKGYQSWVAKLVVRTGRMMVIYLAFVVVAVFTFNQIPSTFLPEEDQGYFLTSIQLPSD 579

Query: 589 VDLSVVRSNLESLQIGDIS------------FQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
                    ++ ++    S            F            +      +   +   +
Sbjct: 580 ATAERTMDVVKKVENFVQSRDAVESSMSILGFSFSGSGAGSAFAVTTLKDWNERNSATTQ 639

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              + +TE +          + P     L     + +
Sbjct: 640 QEVQALTEYLQDLNEGVVFSMLPTAIDGLGTSSNISL 676



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 86/239 (35%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q    S +                 ++++ +  +     ++ + +P 
Sbjct: 260 VLLGDVAEVELGSQNYQYSNRENGQPSTSASVKLSPGANAISASNGIRSRLDELKQAMPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
                        ++  I K IV +  + + + + +++     R+    A+ A   L   
Sbjct: 320 GIDYTITSDAAPFAKISITKVIVTLAEAMVLVFLVMYLFLQNVRYTVIPAIVAPIAL--- 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     + G   N+ ++  ++  IG  V+D +VV + +     +  T +S +     
Sbjct: 377 -LGTFTVMLMLGFSINVFSMFGMVLAIGIIVDDAIVVVENV--ERVISETGVSAKKATQV 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ +     V  +       +PMA   GSV      F++ M+  I+ +A  ++ +   +
Sbjct: 434 AMKDIYSALVGITAVLSAVFIPMAFAAGSVGIIFQQFSLAMSVSILFSAFLALTLTPAL 492



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 84/257 (32%), Gaps = 13/257 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       V LS     +       ++  N        V          A   + ++V 
Sbjct: 783  SIRNERGGMVYLSEFIEPVWKAAPLQLTRFNGIPSVAVSVAPVAGVSSGAAMAEIEKIVA 842

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
               T      T  + +    +    L+      +  S + + + +   ++ W   L  I 
Sbjct: 843  SLPTGTSIEWTGISRQEKQAESQTTLL------LAFSMLVIFLVLSALYESWTTPLAVIL 896

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             + L I  ++    +  +  ++     ++T+IG S  + +++ +         +      
Sbjct: 897  VVPLGIIGSIAAVMVTNMSNDVFFKVGLVTIIGLSAKNAILIIEFA---QIQRSQGKGLL 953

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--IGS-FAIPMAFGIVVAASSSIFI 815
            D    +    L   + TS+A    ++P+ +  G+   I +     +  G++     +IF 
Sbjct: 954  DATIDAAKMRLRPILMTSLAFTCGIIPLVIATGASSEIQNSIGTGVLGGMISGTVLAIFF 1013

Query: 816  AAPILLFIYDWRAKNAR 832
                 +FI +   K  R
Sbjct: 1014 VPVFFVFINELIEKYKR 1030


>gi|163734189|ref|ZP_02141630.1| RND multidrug efflux transporter MexF [Roseobacter litoralis Och
           149]
 gi|161392725|gb|EDQ17053.1| RND multidrug efflux transporter MexF [Roseobacter litoralis Och
           149]
          Length = 1033

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/691 (11%), Positives = 182/691 (26%), Gaps = 57/691 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  ++  +G+L        Q  ++++P   P               +V+  +        
Sbjct: 1   MSVIMTIVGMLA-----YTQLPIEQYPQIAPP-------------SIVVRANYPGADAET 42

Query: 70  LQMYS-DELRSFLKK-EGIGVFSM---RQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           +       L   +   EG+   S          ++++F      +     V   +     
Sbjct: 43  IAATVATPLEQEINGVEGMLYLSSFSTADGSMSLSITFELGTDLDAAQVLVQNRVAIAEP 102

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +L  + +   + TT      +++            +  S     +  D++   +     L
Sbjct: 103 RLPQEVRALGVTTTKSSPDLMMVVHMLSPDETFDQLYVSNYARARVRDRLVRLDGVGDLL 162

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                        DP RL  L  T A +       N    G   G      +   Q  + 
Sbjct: 163 IFGEREFSARVWLDPDRLSSLSLTAADVVDALREQNVQVSGGSLGAPPNDTNSAFQVTIT 222

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            +  +                 +    I       R         +       ++   L 
Sbjct: 223 TQGRL-------------ESPREFGRVIVKASEDGRVVRVRDVARVEIGARSYVNNSYLN 269

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                      +   +   + +    +   L           V          S +    
Sbjct: 270 NKPAVALGIFQRPGSNALASADEIIAVMDELAEDFPRGLEYQVVYNPTEFISASVNAVYQ 329

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           T      LV++V+ + +   +  ++   +I +++I T A++  LG TL L ++ G++L I
Sbjct: 330 TLFEAVLLVVVVILIFLQSWRTAIIPLLAIPVSLIGTFAVMFALGYTLNLLTLFGLILAI 389

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FG 481
           G+ VD  I+V E +    +   +   +         S I  + +  +   V         
Sbjct: 390 GIVVDDAIVVVENVERNIKNGMTPRQASARTMDEVQSAIIGTTLVLIAVFVPAALVPGIT 449

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G   + FA+T+ ++ +IS   ++S+  A+   I++                 + D     
Sbjct: 450 GQFYKQFAVTISVATVISTINSLSLSPALAASILKPHSDTPSRNPLTLLTRPLSDGFNRG 509

Query: 542 FMRARFWGVGISILFSI------------------CSICLLFTHGLNYGIDFKGGIQLGV 583
           F +     V I  +                                      +G   + V
Sbjct: 510 FEKLTNGYVAIVSVLVRSYKMLALSFVAFAGLLGVTYWINQEVPTGFIPDADQGYAIVVV 569

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L    + +       +          F         ++  Q  +         
Sbjct: 570 QLPDGASLERTDAVIRQATEIALETPGVTNAVAFAGFSGATFTNASNQGVIFTTFDSFEN 629

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            I                 + L    I+ + 
Sbjct: 630 RIESGLDAGAIVGQLFGRMQSLREAFIIAIA 660



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 50/139 (35%), Gaps = 5/139 (3%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  I  + L +   L       ++ N+     ++ LIG +  + +++ +  +   
Sbjct: 887  SWALPVAIILVVPLAVLGALAGVMYRSMDNNILTQVGLIVLIGLAAKNAILIVEFAK--Q 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S  +   ++    L   + T+ A  + V+P+ +    G  +  +    + FG+
Sbjct: 945  AQEERGLSPVEAALEASKLRLRPILMTAFAFILGVVPLMIATGPGSEMRQALGTAVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIY 824
                   +F      + I 
Sbjct: 1005 SGVTFLGLFFTPVFYVTIR 1023



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 78/203 (38%), Gaps = 9/203 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +     V++ + +     +    + N           + +     V++  + +LI++ 
Sbjct: 288 ASADEIIAVMDELAEDFPRGLEYQVVYNPTEFISASVNAVYQTLFEAVLLVVVVILIFLQ 347

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L AI    + +  T       G   NL  +  ++  IG  V+D +VV + + 
Sbjct: 348 SWRTAIIPLLAI---PVSLIGTFAVMFALGYTLNLLTLFGLILAIGIVVDDAIVVVENVE 404

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +N+K     ++ R    ++++E     + T++      +P A+     G     FA+ ++
Sbjct: 405 RNIK---NGMTPRQASARTMDEVQSAIIGTTLVLIAVFVPAALVPGITGQFYKQFAVTIS 461

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
              V++  +S+ ++  +   I  
Sbjct: 462 VATVISTINSLSLSPALAASILK 484


>gi|190573981|ref|YP_001971826.1| preprotein translocase subunit SecF [Stenotrophomonas maltophilia
           K279a]
 gi|190011903|emb|CAQ45524.1| putative protein-export membrane protein SecF [Stenotrophomonas
           maltophilia K279a]
          Length = 326

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 159/298 (53%), Gaps = 9/298 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            ++P+   I FMR R   + ++++  + S+ ++   G NY +DF GG  +    ++PVD+
Sbjct: 7   HILPNDTKIDFMRWRHVAMVVTVIVFLASVAIIGVKGFNYALDFTGGTLIEARFDKPVDV 66

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRL-------QYQPGDSVAQTRVLEMVKKKITE 644
             VR+ LE         Q+  G  + L+RL             +         V K ++ 
Sbjct: 67  EQVRNKLEQSGFEGAQVQSVGGNTDLLIRLAPHGEHAPGTGDAAAEDKATAAAVVKALSS 126

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
               +T+   E VGP+I ++L   G+   I      LIYI +RF+W FA+ A    + D+
Sbjct: 127 ADNQATVLRNEFVGPQIGKDLAMNGLYATIFMLAGFLIYIAVRFEWKFAVTASIVAMFDL 186

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T+ + +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   +++++S
Sbjct: 187 IVTVAYVSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSL--RVDSMEVLNRS 244

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           IN+TL R+V T++  F+S L + ++GGS +   A     G V+   SSI +A P+L  
Sbjct: 245 INQTLSRTVITAVMFFLSALALYMYGGSSMEGLAETHMIGAVIVVLSSILVAVPMLTI 302


>gi|149189349|ref|ZP_01867635.1| putative multidrug resistance protein [Vibrio shilonii AK1]
 gi|148836908|gb|EDL53859.1| putative multidrug resistance protein [Vibrio shilonii AK1]
          Length = 1042

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/651 (9%), Positives = 181/651 (27%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      E  
Sbjct: 9   KRPVAAIVLSLLLCVFGIVS-----FSKLAVREMPDIENPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVIEDQLSGISGIDEIESTTRNSMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    L+        + +    +  +      + +  + R  +D+  +     
Sbjct: 115 AQRALPDEADDPLVFKNNGSGEASLYINLSSSE--MDRTQLTDYVNRVLVDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P+ +     TT+ ++      N    G                
Sbjct: 173 SVDISGGLYQVMYIKLKPAYMAGRGVTTSDITSSLRSENIESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +          +     ++           
Sbjct: 219 -----VRNDATVMSVRTARAYNTPVDFEYLVVKRASDNTPIYLKDVADVYVGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGVVNVSMGIVPQSDANPLQVADLVHKEVERMQQFLPQGTRLAIDYDSTVFIDRSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYNTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYFFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   I++     +     + + F   +  
Sbjct: 454 GMIGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSTILKANVKPNRFTQFVDKGFRKLERG 513

Query: 539 AIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               +    +   +   ++ +           +   +       +     R  D +    
Sbjct: 514 YKAALVKALKLRWMAPIVIVACIGGSFQLMQQVPAQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MAANMDIVEKRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 89/260 (34%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P       +V ++V K
Sbjct: 243 LVVKRASDNTPIYLKDVADVYVGAENENSTFKSDGVVNVSMGIVPQSDANPLQVADLVHK 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALG 695
           ++  +           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVERMQQFLPQGTRLAIDYDSTVFIDRSISEVYNTLFITGGLVILVLYIFI-GQARATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  +      FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISSFIAAYFFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
           S      K   E     + T++   +  LP++   G +      F++ +A  ++ ++  +
Sbjct: 419 SPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMIGLLFTEFSVLLAMSVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   I     K  R
Sbjct: 479 LTLTPVLGSTILKANVKPNR 498



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 48/143 (33%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        +     N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMFTVPMGVFGGFLGLVIMQQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    + F   I  +    L   + T+       +P+ +    G     +    + FG+
Sbjct: 931  QLRDKGVEFEKAIIDASARRLRPIMMTAFTTLAGAIPLILSTGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
              A   ++F+   +   I     
Sbjct: 991  AFATLVTLFVIPAMYRLISAKTK 1013


>gi|152993828|ref|YP_001359549.1| RND family multidrug efflux transporter [Sulfurovum sp. NBC37-1]
 gi|151425689|dbj|BAF73192.1| multidrug efflux transporter, RND superfamily [Sulfurovum sp.
           NBC37-1]
          Length = 1041

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/542 (14%), Positives = 166/542 (30%), Gaps = 41/542 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++   I  +GL+      L    + +FP  +P               + +  +
Sbjct: 8   KRPVVAMVISIFIVIVGLIA-----LNILPVAQFPQIVPPT-------------VQVSAN 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVT 116
                   ++      +   L   EG+            +KI + F  SR  +     V 
Sbjct: 50  YPGGSAEVVEKTVTAPIEEQLNGTEGMIYMESSSSSDGTSKIKVYFDLSRNLDLATVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L V+  +  + T       + +           A+  S       +D++  
Sbjct: 110 NRVALAMPTLPVEVTQKGVSTKKLSSSMLQIISVQSSNPQHDALYLSNFASLNIVDELKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +     +        +    +P +L  L  T  +++      N        G   L   
Sbjct: 170 IDGVSDVVNFGERRYAMRVWLNPDKLSALGVTLKEITQAIKEQNLQVSLGTIGDTALSAQ 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY +  K  +                 +    I  +     + +      +      
Sbjct: 230 TKYQYTLVAKTRL-------------NSAKEFKQIIIRENEDGSKIYLRDIARVELGSES 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
            +    L      Q         +     +      A L+                    
Sbjct: 277 YISSARLNGKPSAQLGIFQLPDANALDVAQRVKAKLASLQKRFPKEIKLAATYDTTKFVE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LVL+V+++ +   +  ++   +I +++I T A+L + G ++   +
Sbjct: 337 VSIDEVVKTLFEALLLVLLVVYLFLQSFRATIIPAVAIPVSLIGTFAVLFIAGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREE--NRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G++L IG+ VD  ILV E +          SV  +        ++ I  + +  L   
Sbjct: 397 LFGLILAIGIVVDDAILVVENVEANLEKHPGISVKEATVTAMKEIFAPIVSTTLVLLAVF 456

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V + F  G +    + FA+T+  S+LIS   A+++  A+   I+R  + +          
Sbjct: 457 VPVTFIPGISGALYQQFAMTISFSVLISAVVALTLSPALAAMILRPHEGEKNFFFRAFNN 516

Query: 532 FL 533
            L
Sbjct: 517 AL 518



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 60/140 (42%), Gaps = 4/140 (2%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   +     + + +  T     + G   N   +  ++  IG  V+D ++V + +  N+
Sbjct: 363 SFRATIIPAVAIPVSLIGTFAVLFIAGFSINTLTLFGLILAIGIVVDDAILVVENVEANL 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           + +   IS ++    ++ E     V T++      +P+       G++   FA+ ++F +
Sbjct: 423 EKHP-GISVKEATVTAMKEIFAPIVSTTLVLLAVFVPVTFIPGISGALYQQFAMTISFSV 481

Query: 806 VVAASSSIFIAAPILLFIYD 825
           +++A  ++ ++  +   I  
Sbjct: 482 LISAVVALTLSPALAAMILR 501



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/170 (11%), Positives = 70/170 (41%), Gaps = 7/170 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               +   ++S + + +++  +++ W   L  +  + + +   LG   + G+  ++ A   
Sbjct: 872  NAALYIFMLSLLMVFLFLSAQYESWLTPLMVMLPIPVVMFGALGANMMAGLLNDIYAQIG 931

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG S  + +++ +  ++   L+           ++    L   + T  A  + +LP
Sbjct: 932  LVLLIGMSSKNAILIVEFAKE---LHAAGKDIVSSAIEASILRLRAILMTVFAFLLGILP 988

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      G +   S    +  G++++   +  +   + + +   + + ++
Sbjct: 989  LVFASGAGAASRQSLGTAVFGGMLMSTLLTFLLTPVLFVVLQRMKERFSK 1038


>gi|268317011|ref|YP_003290730.1| protein-export membrane protein SecD [Rhodothermus marinus DSM
           4252]
 gi|262334545|gb|ACY48342.1| protein-export membrane protein SecD [Rhodothermus marinus DSM
           4252]
          Length = 622

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 229/463 (49%), Gaps = 17/463 (3%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG---- 121
              +    + +R  + + G+    +++   + I +        E +   +    +     
Sbjct: 159 EEAVNRAIEIIRDRVDRYGVTEPVIQKQGTRRIVVELPGVDDPERVRRLLRGTARLEFRL 218

Query: 122 -VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH-----AIEQSMEIIRQRIDQIG 175
             + +L     ++++        +   +    D   +       + +     R R   + 
Sbjct: 219 MADPQLLQAALQDIIAYYEPDTTAASETSAVTDTATADTSLAALLGEQPSPERPRNPLLA 278

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
           + +   Q +    +        D +++ +LL      +               G      
Sbjct: 279 VMQPVGQGVVFGIVAGP-----DTAQVNRLLRNPEVQALLPSGIELLYTANPVGTDEQGR 333

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  V  +VE++G  +  A   FD    +P V ++ +  GAR +  +T  N+GK +A
Sbjct: 334 PLYYLLGVRKEVELTGEVITDARVEFDELN-RPQVSMTMNSEGARIWARLTGANVGKHIA 392

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD  V + PV+N+ IPSG++ I+G  + E A  +  +L++G+LP  ++I+EER VG  
Sbjct: 393 IVLDNVVYSYPVVNERIPSGRSSITGLDSREEAQDIVTVLKSGALPAPVDIIEERTVGPS 452

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG  SI  G  +++ GL+L+ LFMI  Y   G++AD ++ LN+I  L +L+   ATLTLP
Sbjct: 453 LGEASIRAGLRSVLTGLLLVALFMIFYYRTGGMIADLALVLNIIFILGILAAFNATLTLP 512

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAGIVL IG+AVD+N+L+ ERIREE    +++  ++D+G+S+A+S IFD+NIT      
Sbjct: 513 GIAGIVLTIGMAVDANVLIFERIREEQATGKTLRAAIDLGYSKAFSAIFDANITTFFTAA 572

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           +L+ FG G ++GFA+T+   I  S+F+AI I R +  +++  +
Sbjct: 573 ILYSFGVGPIQGFAVTLMAGIAASLFSAIVITRIIFDYLVLER 615



 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/171 (22%), Positives = 76/171 (44%), Gaps = 4/171 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +    IR G+  V+   + + +++   ++    + A   L+L+I   LG  A F   
Sbjct: 450 GPSLGEASIRAGLRSVLTGLLLVALFMIFYYR-TGGMIADLALVLNIIFILGILAAFNAT 508

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++++R+R+      T  + R  ID   ++        ++
Sbjct: 509 LTLPGIAGIVLTIGMAVDANVLIFERIREEQA---TGKTLRAAIDLGYSKAFSAIFDANI 565

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             F +   +  +G   I  FA+ +  GI  +  S+I I   I  ++   R 
Sbjct: 566 TTFFTAAILYSFGVGPIQGFAVTLMAGIAASLFSAIVITRIIFDYLVLERK 616



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 73/475 (15%), Positives = 156/475 (32%), Gaps = 23/475 (4%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI 98
           + +  + LGLDL+GG H+ LEV  D  +        +     L          R     +
Sbjct: 57  LRERALKLGLDLQGGMHVTLEVRVDALIRELATDVDETFEEVLAAARER---ARSGDVSL 113

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
             +F +   + +   +++ + +              +   +  E         + Q    
Sbjct: 114 IDAFVEEFERRDPNARLSRYFRN---------PDAGITRRSSNEE----VAAYLRQQAEE 160

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
           A+ +++EIIR R+D+ G++E  IQ+ G+ RI+++LPG  DP R+R+LL  TA++ F  + 
Sbjct: 161 AVNRAIEIIRDRVDRYGVTEPVIQKQGTRRIVVELPGVDDPERVRRLLRGTARLEFRLMA 220

Query: 219 PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG 278
                +  +  +    + D         V  +        A    +            + 
Sbjct: 221 DPQLLQAALQDIIAYYEPDTTAASETSAVTDTATADTSLAALLGEQPSPERPRNPLLAVM 280

Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK--AQISGNFTIETAGILAAMLR 336
                 V    +  P    ++  +    V        +     +   T E    L  +L 
Sbjct: 281 QPVGQGVVFGIVAGPDTAQVNRLLRNPEVQALLPSGIELLYTANPVGTDEQGRPLYYLLG 340

Query: 337 AGSLPIKLNIVEER-NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
                     V     V  D  +      T       +   L    +     +V D  ++
Sbjct: 341 VRKEVELTGEVITDARVEFDELNRPQVSMTMNSEGARIWARLTGANVGKHIAIVLDNVVY 400

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
              ++   + S   +   L S       + +     +     I EE     S+  +    
Sbjct: 401 SYPVVNERIPSGRSSITGLDSREEAQDIVTVLKSGALPAPVDIIEERTVGPSLGEASIRA 460

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
             R+  T     +  +   ++ ++  GG +   A+ + +  ++ +  A +    +
Sbjct: 461 GLRSVLT----GLLLVALFMIFYYRTGGMIADLALVLNIIFILGILAAFNATLTL 511


>gi|88860249|ref|ZP_01134887.1| hydrophobe/amphiphile efflux-1 family protein [Pseudoalteromonas
           tunicata D2]
 gi|88817447|gb|EAR27264.1| hydrophobe/amphiphile efflux-1 family protein [Pseudoalteromonas
           tunicata D2]
          Length = 1000

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/574 (11%), Positives = 163/574 (28%), Gaps = 28/574 (4%)

Query: 55  HLVLEVDEDDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKE 109
            + +           ++      +   +   E +         N    IT+ F      +
Sbjct: 9   QVQVTAVFPGASAQVVEESVIRPIEEQINGVEDMMYIESTAANNGTATITVYFKVGTDSD 68

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
                V   +    + L  + K+  +    +    ++      DQ     I  S      
Sbjct: 69  IAQVNVQNRVALAQTGLPEEVKRQGVAVKKQSSSMLMGITLYSDQENIDDIFLSNYATNY 128

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
             + +G  +              +     P ++  L  T A++       N        G
Sbjct: 129 LTEPLGRLKGVAGAQVMGEKTYSMRIWLRPDKMSSLNVTIAEVQAALREQNLIVAAGKLG 188

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                 +   +Y ++ +  +                 +    I                 
Sbjct: 189 ASPALPNQQFEYSIQAQGRL-------------QSPDEFGATIIRANQNGNFVRLSDIAR 235

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           I            L        +    +  +         +  A L           +  
Sbjct: 236 IELGSKNYGLSAKLNNQDTAFLVIYQLSDANATEVANQVKVTMAELATRFPDGLKYTIPF 295

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   S S    T      LV++V+F+ +   +  L+   +I +++I T A + L+ 
Sbjct: 296 DTTEFIERSISEVVVTLFQAVALVILVVFLFLQNWRATLIPCVAIPVSLIGTFAFMMLMD 355

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ++   ++ G+VL IG+ VD  I+V E +      +   +  ++     +    +  + +
Sbjct: 356 YSINTITLFGLVLAIGIVVDDAIIVIENVERLLKEEKLPIKEAVTKAMEQVSGPVIATTL 415

Query: 469 TALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             L   V + F     G   + F++T+  +++IS   A+++  A+ + ++  + MK +  
Sbjct: 416 VLLAVFVPVGFMPGITGELYKQFSVTISFAVIISSINALTLSPALCVLLLNEQAMKPVKW 475

Query: 526 NPLSRFFLIPDCIAIQF------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                  +                R+   G+   ++F                 + +G +
Sbjct: 476 LAPFERAIDSMTGKYTNAVEFLLKRSARVGIFALLMFVATGWLTKEVPTAFVPGEDQGYL 535

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            + V            + ++ +    ++      
Sbjct: 536 FVNVQLPDAASTGRTENVMQKISEIVMNDPAVTD 569



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 100/251 (39%), Gaps = 7/251 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS +       +   +S +  + +  FLV  Q    ++      +++   ++    
Sbjct: 226 NFVRLSDIARIELGSKNYGLSAKLNNQDTAFLVIYQLSDANATEVANQVKVTMAELATRF 285

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P            +     I + +V +  +   +++ +++  + W   L     + + + 
Sbjct: 286 PDGLKYTIPFDTTEFIERSISEVVVTLFQAVALVILVVFLFLQNWRATLIPCVAIPVSLI 345

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F  L     N   +  ++  IG  V+D ++V + +     L    +  ++ + K++
Sbjct: 346 GTFAFMMLMDYSINTITLFGLVLAIGIVVDDAIIVIENV--ERLLKEEKLPIKEAVTKAM 403

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI-LL 821
            +  G  + T++      +P+       G +   F++ ++F +++++ +++ ++  + +L
Sbjct: 404 EQVSGPVIATTLVLLAVFVPVGFMPGITGELYKQFSVTISFAVIISSINALTLSPALCVL 463

Query: 822 FIYDWRAKNAR 832
            + +   K  +
Sbjct: 464 LLNEQAMKPVK 474



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/410 (11%), Positives = 119/410 (29%), Gaps = 20/410 (4%)

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           I ++  +  +    L     R    ++      ++        G G   GF   +  S  
Sbjct: 592 ILKDWEERVAPELGLRQLIPRLMGQLWTMPDAQVMVFNPPPIPGLGNSSGFEFRLQDSEG 651

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
                   ++  ++    +  ++K +     +        +    ++A+   +       
Sbjct: 652 RDPAQLAQVMNGLIYEANQRPELKQVFSTYRASVPQYFLEVDRNKVKAQGVALSDIFTTL 711

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF------ 611
              +  L+ +  N        + +        D S +R        GD+           
Sbjct: 712 QAQLGSLYINDFNQ-FGRTYRVVVQAETQFRKDPSDLRHYYVRNVDGDMVPLTTLATLKP 770

Query: 612 ----DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                   +F +          A+          + E+              +  +EL  
Sbjct: 771 ILGPTSVNHFNLYRSASITGQAAEGHASGEAIAAMQELAAQLPAGYIYEWAGQSKQELEA 830

Query: 668 KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
             +  ++     + +Y+++      W      I  + L +   +    + G+  N+ A  
Sbjct: 831 GDLTPILFGLAVIFVYLFLVAQYESWTIPFSVIAAVPLALFGAMLALYVIGMANNIYAQV 890

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++ LIG S    +++ +   +   L  +  S  D   ++        + T+++  + VL
Sbjct: 891 GLVLLIGLSTKTAILIVEFAME---LRASGASIFDAALQAAKLRFRAVLMTALSFVLGVL 947

Query: 785 PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           P+      G     S  I +  G++ A      +       I   R K  
Sbjct: 948 PLVFATGAGAGSRVSLGITVLAGMLAATIFGTLLIPTFYRLIQQMREKIK 997


>gi|307544626|ref|YP_003897105.1| acriflavin resistance protein [Halomonas elongata DSM 2581]
 gi|307216650|emb|CBV41920.1| acriflavin resistance protein [Halomonas elongata DSM 2581]
          Length = 1040

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/570 (13%), Positives = 164/570 (28%), Gaps = 40/570 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L ++I   GLL      L +  L  +PS  P   +S+  D  G         
Sbjct: 9   QRPVLATVLAALIVAFGLLA-----LDRLPLQEYPSIDPP-VVSIRTDYPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S +    +   S     + I + F+  +  +  A+ +   + G
Sbjct: 55  SASVVETRITQVLEDRISGVSGIEVISSSSSDGNSSINVEFSLDKDIDAAANDIRDRIAG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +     +         ++    +         E +    R   D+  + E   
Sbjct: 115 ARNNLPDEADSPEVRKADSGSDIVIWLALSGSD--YDIGELTDYAERYLTDRFSVQEGAS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q +        +    D   L     T   ++      N    G     R  +       
Sbjct: 173 QVIVGGGYEYAMRVWLDADALAARGLTVGDVTNSLREENVELPGGSVESRDRQFMVRLPR 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +                           +             +           
Sbjct: 233 DFATPED-------------------FRALALSRDDNGYLVRLDDVARVEIGAVEERSLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       ++  +      +     A +           +          +   
Sbjct: 274 RGNGVPMVGLGIRKQSTANVLALSRSVKEELARVAPTLPDGMELKLHHDASTFVSNAIFE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++ +F+ +   +  L+   ++ + +I T A L+ LG T+ L ++  +V
Sbjct: 334 VVQTLFIAMGLVVVAIFIFLGNLRTTLIPAVTVPIALIGTFAALAALGFTINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E I    +   ++   +   G  +    +  + +  +   V L F 
Sbjct: 394 LAIGLIVDDAIVVLENIHRRMQEYGETALVAAYRGSRQIAFAVIATTLVLIAVFVPLSFM 453

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G   R    FA+T+  ++ IS   A+++   M   I   + M    I       L    
Sbjct: 454 QGDIGRLFSEFALTLAAAVSISTLLALTLTPMMASKI-LKRDMHEGRIAHGVHRALDASR 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
            A + M  R       ++    ++      
Sbjct: 513 AAYRRMLERVLRWRWPVMALFFALIGAMVW 542



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 78/209 (37%), Gaps = 8/209 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S +    L  V   + + + L    +          E+++   + + +  +A+ I++   
Sbjct: 297 SRSVKEELARVAPTLPDGMELKLHHDASTFVSNAIFEVVQTLFIAMGLVVVAIFIFLG-- 354

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    T+ + +  T    A  G   NL  + A++  IG  V+D +VV + + + 
Sbjct: 355 -NLRTTLIPAVTVPIALIGTFAALAALGFTINLLTLLALVLAIGLIVDDAIVVLENIHRR 413

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
           M+ Y    +      +   +     + T++      +P++   G +      FA+ +A  
Sbjct: 414 MQEY--GETALVAAYRGSRQIAFAVIATTLVLIAVFVPLSFMQGDIGRLFSEFALTLAAA 471

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           + ++   ++ +   +   I        RI
Sbjct: 472 VSISTLLALTLTPMMASKILKRDMHEGRI 500



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 53/142 (37%), Gaps = 7/142 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L +   L    L G   N  +   ++ L+G +  + +++ +      
Sbjct: 880  SFVHPLVIMFTVPLAMIGALLGLGLSGQSLNTYSQVGLVMLVGLAAKNGILIVEFAN--- 936

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L     +F + + ++    L   V T++      +P+ +    G          +  G+
Sbjct: 937  QLRDAGHAFHEALVEAAVTRLRPIVMTAVTTMAGAIPLIISSGAGAETRLVLGTVILCGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
              A   ++F+  P+   +   R
Sbjct: 997  ASATLFTLFVV-PVAYDLLARR 1017


>gi|210135721|ref|YP_002302160.1| preprotein translocase subunit SecD [Helicobacter pylori P12]
 gi|210133689|gb|ACJ08680.1| protein-export membrane protein SecD [Helicobacter pylori P12]
          Length = 525

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 276/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNSRLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSNLEGISFELLDEDEAKKLDVLL----- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L +       +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 106 -----LELQGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPI 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKDLISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLPDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A++ G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALIGGFILVMGFMVLYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIIGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ +I   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALIGGFILVMGFMVLYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+ + +  +G   I  FA+    GI+ +  ++I
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAI 495


>gi|113867761|ref|YP_726250.1| cation/multidrug efflux pump [Ralstonia eutropha H16]
 gi|113526537|emb|CAJ92882.1| Cation/multidrug efflux pump [Ralstonia eutropha H16]
          Length = 1063

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/692 (10%), Positives = 176/692 (25%), Gaps = 47/692 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  IG +           +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLIFLIGAISMF-----NLPVSEYPEVVPPSVV---------VRAQFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVATPLEEQINGVEDMLYMNSQANTDGTLTLTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D+I   +   
Sbjct: 116 AEPRLPEDVRRLGITTVKSSPDLTMVVHLVSPNDRYDTTYLRNYALINVKDRIARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    +P ++ +     + +       N      + G          Q 
Sbjct: 176 QVRLFGAGDYSMRVWLNPEKIAERGLAASDVVRAIREQNVQVAAGVLGQSPTLPGTDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I+         +      I    +      
Sbjct: 236 SVNAQGRL-------------QTVEEFGDIIAKTSPDGVVTYLKDIARIELGASEYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +       +            A L+          +          S   
Sbjct: 283 QLDNKSALSLLIFQSPGANAIEISNEVRKTMAELKQNMPEGVAYSIVYDPTQFVRHSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T  L+   G ++   S+ G+V
Sbjct: 343 VVHTLFEAIVLVVLVVILFLQTWRASIIPLLAVPVSIVGTFGLMHAFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  +   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEEGLTPKEATYKAMREVSGPIIAIALTLIAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRA--------------MMIFIIRYKKMKSID 524
              G   + FA+T+ +S +IS F ++++  A               +   +     K   
Sbjct: 463 GLTGQFYKQFALTISISTIISAFNSLTLSPALSALLLKSHDAPKDWLTRGMDKVLGKFFV 522

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                                R  G    +   +          +  G       Q  V 
Sbjct: 523 RFNRFFGRSSESYGRGVKGVIRRKGSVFGVYAVMLVAAWGVFQLVPKGFVPAQDKQYLVS 582

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +  D + +    +  +          G ++ +                  +       
Sbjct: 583 FAKLPDGATLDRTEDVTRRMSEIALKHPGVESAVAYPGLSINGFTNSPSAGIVFVTLDPF 642

Query: 645 IVPLSTIQNTEIVGPKISRE--LIRKGIVGVI 674
               S   + + +   +++E   I+   + V 
Sbjct: 643 EKRKSKELSGKAIAADLNKEYGAIQDAFIAVF 674



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  +   +   +    L   + N+      + L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPTSLLAAMTGVWLTQGDNNIFTQIGFIVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS A  + V+P+ V    G  +  +  + +  G+
Sbjct: 960  -LEHHGRTVVEAAIEASRLRLRPILMTSFAFIMGVVPLVVSSGAGAEMRQAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +     +  R
Sbjct: 1019 LGVTFFGLFLTPVFYVALRLLATRGQR 1045



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 86/233 (36%), Gaps = 17/233 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     +      G     +  + +   +  +  + E V   I 
Sbjct: 270 RIELGASEYALRSQLDNKSALSLLIFQSPGANAIEISNEVRKTMAELKQNMPEGVAYSIV 329

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    + E V   +   ++   +V ++               W  ++  +  + + 
Sbjct: 330 YDPTQFVRHSIEAVVHTLFEAIVLVVLVVIL-----------FLQTWRASIIPLLAVPVS 378

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T G    FG   N  ++  ++  IG  V+D +VV + + +N++     ++ ++   K
Sbjct: 379 IVGTFGLMHAFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEE---GLTPKEATYK 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
           ++ E  G  +  ++      +P+A      G     FA+ ++   +++A +S+
Sbjct: 436 AMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTIISAFNSL 488



 Score = 39.7 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 42/527 (7%), Positives = 129/527 (24%), Gaps = 50/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            + + + V    ++   G+   +P     +   ++  +  K      LD            
Sbjct: 546  KGSVFGVYAVMLVAAWGVFQLVPKGFVPAQDKQYLVSFAKLPDGATLD-----------R 594

Query: 62   EDDFVNGFLQMYSDE--LRSFL--KKEGIGVFSMRQIQNKITLSFAD-------SRFKEN 110
             +D      ++      + S +      I  F+       + ++              + 
Sbjct: 595  TEDVTRRMSEIALKHPGVESAVAYPGLSINGFTNSPSAGIVFVTLDPFEKRKSKELSGKA 654

Query: 111  IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
            IA  +      +            +          ++ ++          + +   + + 
Sbjct: 655  IAADLNKEYGAIQDAFIAVFPPPPVQDLGTIGGFKLMIEDRAALGYDALFDATNSFMTKA 714

Query: 171  IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
                   E           + QL  + D ++ +QL      +             ++   
Sbjct: 715  RA---TPELAGIFSNYQVNVPQLDVQLDRTKAKQLGVPVTDVFDTL--QTYLGSAYVNDF 769

Query: 231  RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                 +   +   + +       +    A        P+  +   + G      +  +  
Sbjct: 770  NKFGRTYQVKVQADAQYRQHAEDILQLKARSASGEMVPLSSLVQVKQGFGPDSVIRYNGF 829

Query: 291  GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                         ++     A     A+            L                   
Sbjct: 830  TAADLNGGPALGFSSGQAQAAAERIAAETLPKGIGFEWTELTYQDILAGNAGVWIFPLCV 889

Query: 351  NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
             +   + +      T  +   L++                      +++  +  + L   
Sbjct: 890  LLVFLVLAAQYESLTLPLAVILIV--------------------PTSLLAAMTGVWLTQG 929

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
               + +  G ++ +GL+  + IL+ E  RE     ++V  +           I  ++   
Sbjct: 930  DNNIFTQIGFIVLVGLSAKNAILIVEFARELEHHGRTVVEAAIEASRLRLRPILMTSFAF 989

Query: 471  LIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            ++  V L      G    +   + +   +L   F  + +     + +
Sbjct: 990  IMGVVPLVVSSGAGAEMRQAMGVAVFAGMLGVTFFGLFLTPVFYVAL 1036


>gi|325921153|ref|ZP_08183023.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas gardneri ATCC 19865]
 gi|325548374|gb|EGD19358.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas gardneri ATCC 19865]
          Length = 944

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/536 (10%), Positives = 143/536 (26%), Gaps = 41/536 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PIFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTSEKAVTQVIEQQLTGIDHLLYFNSSSAANGRVTITLTFETGTDPDIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D         +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSIDRDALNDIVGSRVLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G     +   
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPEGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPDQFENIILRTDNNGATVRLKDVARVTVGPSNYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E  G     L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSEAVGAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVIHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +     G   + FA+T+ +S+  S F A+S   A+    ++       +    + 
Sbjct: 457 SLQPGASGAIYKQFALTIAMSMGFSAFLALSFTPALCGAFLKSTHSTKKNWIYRTF 512



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 477

Query: 805 IVVAASSSIFIAAPI 819
           +  +A  ++     +
Sbjct: 478 MGFSAFLALSFTPAL 492


>gi|317178263|dbj|BAJ56052.1| preprotein translocase subunit SecD [Helicobacter pylori F16]
          Length = 525

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKFFNARLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGREEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDVQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|301629621|ref|XP_002943936.1| PREDICTED: efflux pump membrane transporter bepE-like [Xenopus
           (Silurana) tropicalis]
          Length = 1037

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/584 (13%), Positives = 173/584 (29%), Gaps = 34/584 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + ++L  ++   G +  L     Q  +  +P   P   +                 
Sbjct: 9   RRPVFALVLSLLVVIGGAISLL-----QLPVSEYPEVAPPTIV---------IRASFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               V+  +    ++  + ++             N  +TL+FA     ++   +V   + 
Sbjct: 55  APTTVSETVASPLEQAMTGIENMLYMSSQSSADGNLALTLTFALGTNLDDALSRVQSRVN 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S L  + ++  +          ++            +  +  +    I+++   +  
Sbjct: 115 RSLSSLPTEVQRLGVTVDKTSPSLALVVHLTSPGQQYDRLYLANYMDVNIINELYKIDGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP ++     T +++       N        G          Q
Sbjct: 175 SDIRLLGMGDYSLRVWLDPDKVSARNLTASEVVNAIRAQNRQVVAGTLGSPPGAAEHAFQ 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           +LV  +  +                 +    +     GA          +    +     
Sbjct: 235 WLVHAQGRLVSEE-------------EFENIVIRAGTGAEITRLRDVARVELGSSQYALR 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +              L A   P   + +          S  
Sbjct: 282 AHLDNQPSAALQIFQSPGANTIALASRVRQRMQELAADFPPGIQHSIGYDPTVFVRHSIG 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ +++I TLA++ LLG +L   S+ G+
Sbjct: 342 AVLTTLFEAVALVVLVVLLFLQTWRASIIPLAAVPVSLIGTLAVMHLLGFSLNTLSLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +            + +         I  + +      +   F 
Sbjct: 402 VLAIGIVVDDAIVVVENVERNMALGLDPAMATERAMREVTGPIIATALVLSAVFIPTAFI 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD- 536
               G   R FA+T+ +S +IS F ++++  A+   ++R        ++ L    L    
Sbjct: 462 PGLTGQFYRQFALTIAISTIISAFNSLTLSPALSALLLRAHGAPKDRLSRLLDRVLGGWL 521

Query: 537 --CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                  F RA    VG +      S   L  +    G+ + G 
Sbjct: 522 FQPFNRWFERASHAYVGTTRRIVRRSGIGLAVYAGLLGLTWLGF 565



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 94/270 (34%), Gaps = 14/270 (5%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S   +         H     +  +    + + A    +++ +R                 
Sbjct: 224 SPPGAAEHAFQWLVHAQGRLVSEEEFENIVIRAGTGAEITRLRDVARVELGSSQYALRAH 283

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            +      LQ           +   V++++ E+           +G   +   +R  I  
Sbjct: 284 LDNQPSAALQIFQSPGANTIALASRVRQRMQELAADFPPGIQHSIGYDPT-VFVRHSIGA 342

Query: 673 VIISAI-----AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
           V+ +        +L+ +     W  ++  +  + + +  TL    L G   N  ++  ++
Sbjct: 343 VLTTLFEAVALVVLVVLLFLQTWRASIIPLAAVPVSLIGTLAVMHLLGFSLNTLSLFGLV 402

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             IG  V+D +VV + + +NM L    +      ++++ E  G  + T++    +V    
Sbjct: 403 LAIGIVVDDAIVVVENVERNMAL---GLDPAMATERAMREVTGPIIATAL-VLSAVFIPT 458

Query: 788 VW----GGSVIGSFAIPMAFGIVVAASSSI 813
            +     G     FA+ +A   +++A +S+
Sbjct: 459 AFIPGLTGQFYRQFALTIAISTIISAFNSL 488



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L        + N+     ++ LIG +  + +++ +  +   
Sbjct: 878  SWSLPLAVILIVPMTLLSALAGVIASNGDNNIFTQIGLIVLIGLACKNAILIVEFAKD-- 935

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +   + I K+    L   + TS A  + V+P+A+    G  +  +    +  G+
Sbjct: 936  -RQVEGLDSVNAILKACQLRLRPVLMTSAAFIMGVVPLALSTGAGAEMRRAMGTAVLSGM 994

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            V      + +     + +     K 
Sbjct: 995  VGVTLFGLLLTPLFYVVVCRRVEKR 1019


>gi|320109188|ref|YP_004184778.1| protein-export membrane protein SecD [Terriglobus saanensis SP1PR4]
 gi|319927709|gb|ADV84784.1| protein-export membrane protein SecD [Terriglobus saanensis SP1PR4]
          Length = 526

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 149/494 (30%), Positives = 258/494 (52%), Gaps = 22/494 (4%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT- 99
           K  + LGLDL+GG+HLVL+V   + +         ++++ L K G+   ++ + QN    
Sbjct: 35  KTNLQLGLDLKGGTHLVLQVHTAEAIAAATDNAVQQVQTDLAKVGVTGTTVTRSQNAAEP 94

Query: 100 -LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH 158
            +              V   L G          +       +  I + +    + +    
Sbjct: 95  GVMIITGV-PSAKLSDVRDALTGSTYGDYDLTSQP------DGTIRLSMKATAVREARER 147

Query: 159 AIEQSMEIIRQRIDQIGISEST--IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
           A+E S+E IR+R+D +G++E+       G  +IL++LPG  DP ++ +++ +TA++  H+
Sbjct: 148 ALETSIETIRERVDTLGVAEAAIQKYGQGEDQILVELPGVSDPGQVSRVIQSTARLEIHE 207

Query: 217 V-------LPNNSKKGFMFGVRFLRDSDG---NQYLVEDKVEISGIHLNGATANFDPKTH 266
                       ++         ++  +G   NQ+ V  +V I              ++ 
Sbjct: 208 AVSGQGYPTEQEAQATAGPDTVVMQGGNGAGDNQWWVLKRVSIVQGPDFRDARPSQDQSG 267

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           +  V  +       RF+  T  N+GK +A+VLD  V     IN A      +I+G F  +
Sbjct: 268 RTAVSFNLTTAAGDRFYAYTSANVGKYMAIVLDNHVKEVATINSA-IRDSGEIAGGFNKD 326

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
           +A  L+ MLR GSLP  +  +E R VGA LG+ S+ +G  A VAG++ ++ FM++ Y   
Sbjct: 327 SAAELSLMLRTGSLPASITYLETRTVGASLGAASVKQGVIAAVAGMLAVMAFMLIYYRGA 386

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G+ AD ++FLN+++ L  +   G+TLTLP IAG++L IG+ VDSN+L+ ERIREE R+ +
Sbjct: 387 GINADLALFLNLVILLGFMGFTGSTLTLPGIAGVILTIGMGVDSNVLIFERIREELREGK 446

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           +   ++  GF+ A+ TI D++IT +++  +LFF G G VRGFA+T+   +L ++FTA+ +
Sbjct: 447 NAHAAVQNGFAHAWITIVDTHITTIVSAAILFFVGTGPVRGFAVTLVFGLLANLFTAVFV 506

Query: 507 VRAMMIFIIRYKKM 520
            R +  F++  K+ 
Sbjct: 507 SRTIFDFLLNRKQR 520



 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 102/284 (35%), Gaps = 5/284 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
            W V   +               +          L   A          +  + + I   
Sbjct: 241 QWWVLKRVSIVQGPDFRDARPSQDQSGRTAVSFNLTTAAGDRFYAYTSANVGKYMAIVLD 300

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP-LSTIQNTEIVGPKISREL 665
           +        N  +R   +      +    E+     T  +P   T   T  VG  +    
Sbjct: 301 NHVKEVATINSAIRDSGEIAGGFNKDSAAELSLMLRTGSLPASITYLETRTVGASLGAAS 360

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           +++G++  +   +A++ ++ I ++    + A   L L++   LGF    G    L  +A 
Sbjct: 361 VKQGVIAAVAGMLAVMAFMLIYYR-GAGINADLALFLNLVILLGFMGFTGSTLTLPGIAG 419

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           V+  IG  V+  V++++R+R+ ++      +    +           V T +   +S   
Sbjct: 420 VILTIGMGVDSNVLIFERIREELRE---GKNAHAAVQNGFAHAWITIVDTHITTIVSAAI 476

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +   G   +  FA+ + FG++    +++F++  I  F+ + + +
Sbjct: 477 LFFVGTGPVRGFAVTLVFGLLANLFTAVFVSRTIFDFLLNRKQR 520


>gi|218260889|ref|ZP_03475963.1| hypothetical protein PRABACTJOHN_01627 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224311|gb|EEC96961.1| hypothetical protein PRABACTJOHN_01627 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1050

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/619 (11%), Positives = 176/619 (28%), Gaps = 46/619 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GLL           + +FP  +P +                   
Sbjct: 7   RRPILSGVISVVIVFLGLLAI-----TSLPITQFPDIVPPSVT---------VTARYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D +   +    +   + +                +T + F      +  +  V   + 
Sbjct: 53  NADVMAKTVATPLERAINGVPGMTYMTTVCTNDGMSLTTIYFKVGTDPDVASVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  ++T  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVITEKEVNSMLMYLNIMSTDSSHTEKFVYNFADINILRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P+RL     +  +++      N        G+   +     Q
Sbjct: 173 GFVEIMGSRDYAMRVWLNPNRLAAYNMSPQEVTAAIRSQNIEAAPGKTGISSDKIPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++              +       +    +                 I          
Sbjct: 233 YVLQ-------------YSGKFSTPEEYGEIVLKALPDGSVLRLKDVATIEFDSEDYNMI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSD 359
            +         +   +   +    I+        ++ +   P     +          S 
Sbjct: 280 SMTDGKPSASIMIKQRPGSNAREVIQNIKAKMEEIKESSFAPGMDYNISYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S+   T      LV IV+++ +   +  L+   ++ ++++ T   + +LG ++ + ++  
Sbjct: 340 SVVLRTLLEAFLLVFIVVYLFLQDFRSTLIPAIAVPVSLVGTFFFMQMLGFSINMLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +VL IG+ VD+ I+V E +  +    +        +       A   I        +   
Sbjct: 400 LVLAIGIVVDNAIVVVEAVHVKMHNEKLPPAKATEAAIREIGGAIIAITLVMSAVFVPVG 459

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI------------ 523
            +    G   R F++T+ ++I+IS   A+++  A+   +++                   
Sbjct: 460 FMSGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALMLKPVSRDKKVKKSLLARFFDG 519

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID-FKGGIQLG 582
                             F+  RF      I+F + +  + F     +  +  +G I + 
Sbjct: 520 FNKRYDHLERRYKINLRLFLNRRFLTYATLIVFCLATWGMTFVLPSGFIPNEDQGMIYVN 579

Query: 583 VLANRPVDLSVVRSNLESL 601
           V A     L    + L  +
Sbjct: 580 VDAPPGATLERSEAALSKV 598



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/241 (11%), Positives = 90/241 (37%), Gaps = 6/241 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +S     IS  +     + +++ +           +   +++            N   
Sbjct: 270 EFDSEDYNMISMTDGKPSASIMIKQRPGSNAREVIQNIKAKMEEIKESSFAPGMDYNISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I   +  ++ + + + I +++    +   L     + + +  T  F  + G
Sbjct: 330 DVSRFLDASISVVLRTLLEAFLLVFIVVYLFLQDFRSTLIPAIAVPVSLVGTFFFMQMLG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+  + A++  IG  V++ +VV + +   +K++   +      + +I E  G  +  
Sbjct: 390 FSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHNEKLPPAKATEAAIREIGGAIIAI 447

Query: 776 SMAAFISVL-PMAVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++      +    + G   I    F++ +A  IV++  +++ ++  +   +    +++ +
Sbjct: 448 TLVMSAVFVPVGFMSGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALMLKPVSRDKK 507

Query: 833 I 833
           +
Sbjct: 508 V 508



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 77/230 (33%), Gaps = 16/230 (6%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              + +          A         + + EI      +  +I    ++RE    G   ++
Sbjct: 817  TRYNLFTSAMITGEQAPGVSSGEALEAVEEIAAEVLPRGYDIEWSGVAREEKESGGQSLV 876

Query: 675  I-SAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I +   + +Y+ +          L  I +L   +  +       G+E N+ A  A++ LI
Sbjct: 877  IFAICLVFVYLLLAAQYESLLLPLPVILSLPAGVFGSFLLLYAVGLENNIYAQVALVMLI 936

Query: 731  GYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            G    + +++     +         +S      +     L   + TS A    ++P+A+ 
Sbjct: 937  GLLGKNAILII----EVANQCRKEGVSIMGAAIQGATSRLRPILMTSFAFISGLIPLAIA 992

Query: 789  WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYD----WRAKNAR 832
             G   +   S     A G+++     IF+   + +         + K  +
Sbjct: 993  SGAGALGNRSIGTAAAGGMLIGTFVGIFLIPGLYVIFESLATYLKEKKQK 1042


>gi|256422354|ref|YP_003123007.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
 gi|256037262|gb|ACU60806.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
          Length = 1530

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/622 (11%), Positives = 171/622 (27%), Gaps = 53/622 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I      +     L    + +FP  +P               + +   
Sbjct: 7   KRPVLSLVISLIIV-----LLGLLALFTLPVTQFPDIVPP-------------SVTVTAK 48

Query: 62  EDDFVNGF-LQMYSDELRSFLKKE-GIGVFSMRQIQNKIT---LSFADSRFKENIADKVT 116
                     +  +  L   +    G+   S     N IT   + F      +  A  V 
Sbjct: 49  YTGANAEVCAKAVATPLERAINGVPGMTYMSSVSSNNGITLIQVFFNVGTDPDQAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  +  +L  +  K  + T  E    ++      +    +            + ++  
Sbjct: 109 NRVATIIDELPEEVIKAGVTTEKEVNSMLLYLNVMSEDSTLNEQFIYNFADINVLQELKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P R+     +  ++       N        G     D 
Sbjct: 169 IDGVGFAEIMGAKEYAMRVWLKPDRMLAYNLSADEVISGIRKQNIEAAPGKTGESADNDP 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY++                       +    I                ++      
Sbjct: 229 QVLQYVL-------------RYTGKFFDPAQYENIILRANPDGSVLKLKDVADVTFGALS 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGAD 355
                          +   +   +    I       A L+ +   P              
Sbjct: 276 YGMVSKTDGKPSASIMLKQRPGSNAQEVIANVKTRMAELKVSTFPPGMSYNFNYDVSRFL 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV IV+++ +   +  L+   ++ + +I TL  + +LG ++ L 
Sbjct: 336 DASIHEVLRTLIEAFILVFIVVYLFLQDFRSTLIPALAVPVALIGTLCFMQMLGFSINLL 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVF----CSLDMGFSRAYSTIFDSNITAL 471
           ++  +VL IG+ VD+ I+V E +  + ++          +     S A   I        
Sbjct: 396 TLFALVLAIGIVVDNAIVVVEAVHVKMQETHLPPLEATLAAMREISGALVAITLVMSAVF 455

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------------KK 519
           +    L    G   R F++T+ ++I+IS   A+++  A+   ++R+            + 
Sbjct: 456 VPVAFLSGPVGVFYRQFSLTLAIAIVISGINAVTLTPALCAIMLRHNHDAGKKKSLLQRF 515

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
               +             +     R     V + + F           G     + +G I
Sbjct: 516 FDKFNFGYNKTERSYSKLVGYIAGRKMITFVLMIVFFIATWGASAILPGGFIPSEDQGMI 575

Query: 580 QLGVLANRPVDLSVVRSNLESL 601
            + V       ++   + L+ +
Sbjct: 576 YVNVTTPAGATVARTEAVLDQV 597



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 93/268 (34%), Gaps = 10/268 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            D      + + AN    +  ++   +              +      +  +        
Sbjct: 242 FDPAQYENIILRANPDGSVLKLKDVADVTFGALSYGMVSKTDGKPSASIMLKQRPGSNAQ 301

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRF 688
            V+  VK ++ E+   +                +   I      +I + I + I +++  
Sbjct: 302 EVIANVKTRMAELKVSTFPPGMSYNFNYDVSRFLDASIHEVLRTLIEAFILVFIVVYLFL 361

Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +   L     + + +  TL F  + G   NL  + A++  IG  V++ +VV + +   
Sbjct: 362 QDFRSTLIPALAVPVALIGTLCFMQMLGFSINLLTLFALVLAIGIVVDNAIVVVEAVH-- 419

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           +K+  T +   +    ++ E  G  V  ++      +P+A   G V      F++ +A  
Sbjct: 420 VKMQETHLPPLEATLAAMREISGALVAITLVMSAVFVPVAFLSGPVGVFYRQFSLTLAIA 479

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           IV++  +++ +   +   +        +
Sbjct: 480 IVISGINAVTLTPALCAIMLRHNHDAGK 507



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  I +L   I        + G+E N+ A  A++ LIG    + +++ +     +
Sbjct: 895  SFLLPLPVILSLPAGIFGAFITLKMAGLENNIYAQVALVMLIGLLGKNAILIVEFA---I 951

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFGI 805
                  +S  +   +     L   + TS A    ++P+ +  G   +   S     A G+
Sbjct: 952  LRTKQGLSVLEAAKEGAVSRLRPILMTSFAFIAGLIPLCIASGAGAMGNRSIGTAAAGGM 1011

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            ++     + I   + +      +K  
Sbjct: 1012 LIGTVFGVLIIPGLYVLFASIGSKKK 1037


>gi|261340011|ref|ZP_05967869.1| efflux transporter, HAE1 family, inner membrane component
           [Enterobacter cancerogenus ATCC 35316]
 gi|288317929|gb|EFC56867.1| efflux transporter, HAE1 family, inner membrane component
           [Enterobacter cancerogenus ATCC 35316]
          Length = 1031

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/546 (13%), Positives = 151/546 (27%), Gaps = 33/546 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L       P+  + ++P+  P   I           +      
Sbjct: 8   RPVFAWVVALFIVLTGVLSI-----PRLPVAQYPAVAPPGII---------ISVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D +N  +    +   S +        S        IT++F      +     +   ++ 
Sbjct: 54  PDIMNTSVVSLIEREISGVDNLLYFESSSDTTGSASITVTFKPGTDIKLAQMDLQNQIKI 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    ++N +         +++             + S    R   D++       
Sbjct: 114 VEPRLPQAVRQNGINVEAANSGFLMMVGLKSTTGKFEEADLSDYFSRNVSDELRRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP +L     + + +       N        G        G  Y
Sbjct: 174 KVQLFG-GEKALRIWLDPMQLHSYGLSVSDVLTAVGQQNALVSPGKTGDEPASAGQGVTY 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K +++ +                       E    R        I   L     G 
Sbjct: 233 PITVKGQLTSVE-------------AFRNITLKSETSGARLKLSDVARIESGLQSYAFGI 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +   T          L           V          S   
Sbjct: 280 RENGVPATAAAIQLSPGANAMSTASGVRARIDELSQVLPEGMAFTVPFDTAPFVKLSIMK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+ + +   +  L+      + ++ T  ++   G ++ + ++ G+V
Sbjct: 340 VVQTFVEAMVLVFLVMLLFLHKIRCTLIPAIVAPVALLGTFTVMLFSGYSINILTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +   S   +           I    +      + + F 
Sbjct: 400 LAIGIIVDDAIVVVENVERLMEEKNLSPRDATREAMHEITPAIIGITLVLTAVFIPMGFA 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F I+M +SIL+S F A+++  A+   +++    +       +  F     
Sbjct: 460 EGSVGIIYRQFCISMAVSILLSAFLALTLTPALCATLLQPHSAQKQGGGRFAVRFNTRFH 519

Query: 538 IAIQFM 543
               + 
Sbjct: 520 TLTTWY 525



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/275 (10%), Positives = 93/275 (33%), Gaps = 7/275 (2%)

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +     +    L +         V  S   ++       Q    +    +R
Sbjct: 760  RVQQVIIQADAPYRMQPEQILTLSVKNRQGQMVPVSTFATISWNVAPQQLTRYQGYSAIR 819

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +        +    +++++    ++      +       +I  +    G++ + I  +  
Sbjct: 820  ITGSAAIGESSGTAMKVMENLSRDLPQGMAGEWAGSSLQEIKSQSQLPGLIVLSI-LVVF 878

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++   +   W      +  + L +   +   ++ G+  ++     ++TLIG S  + +++
Sbjct: 879  MVLAALYESWSIPFAVMLVVPLGLIGAVVAVSVAGMTNDVFFKVGLITLIGLSAKNAILI 938

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSF 797
             +  R   +L+   +       ++ ++ L   + TS+A  + V+P+ +  G+      + 
Sbjct: 939  VEFAR---QLHRQGLPLLAATIQAASQRLRPILMTSLAFTLGVVPLMLASGASNSTQHAI 995

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               +  G++     +IF      + I  +     +
Sbjct: 996  GTGVFGGMISGTLLAIFFVPVFFIVIARFIESARK 1030



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 9/137 (6%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           IR     A+ A   L      T       G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 362 IRCTLIPAIVAPVAL----LGTFTVMLFSGYSINILTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMA 802
               +   ++S RD   ++++E     +  ++      +PM    G   I    F I MA
Sbjct: 417 -ERLMEEKNLSPRDATREAMHEITPAIIGITLVLTAVFIPMGFAEGSVGIIYRQFCISMA 475

Query: 803 FGIVVAASSSIFIAAPI 819
             I+++A  ++ +   +
Sbjct: 476 VSILLSAFLALTLTPAL 492


>gi|227503515|ref|ZP_03933564.1| preprotein translocase subunit SecF [Corynebacterium accolens ATCC
           49725]
 gi|227076018|gb|EEI13981.1| preprotein translocase subunit SecF [Corynebacterium accolens ATCC
           49725]
          Length = 390

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 130/319 (40%), Gaps = 11/319 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L  D     F+        I+    + +I  +   G    +DF+GG  L +
Sbjct: 6   KHKISRLDRLYEDERGYDFIGHTKRWYAITAALLVGAIAAILIRGFTLSLDFEGGTTLSM 65

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A    +  V     +S  +     +      +  + +  +             + ++  
Sbjct: 66  PAGDLKEDEVATVFEDSTGVEPEQVRIVGAGDSETLEITSERLSQEEVDSARSAIYEEFQ 125

Query: 644 EIVPL----STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                         +  V       + ++ I+ +++  +A  IY+ +R +   A  AI+ 
Sbjct: 126 PKDENGEATPDAIGSSTVSESWGSSITQRMILAMVVFLVAATIYVAVRLQKIMAFAAISA 185

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISF 757
           LI+D     G +ALFG E +   +  +LT++ +S+ D V+V+D++ +N        S ++
Sbjct: 186 LIIDGIVIAGIYALFGFEVSPAVIIGLLTVLTFSIYDSVIVFDKVNENTAGLEGQRSKTY 245

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSS 812
            +L + +IN+T+ RS+ TS+ + + ++ + V      G   +   A+    G++    SS
Sbjct: 246 GELANLAINQTVMRSISTSIISALPIIALFVIAVWLMGIGTLRDLALIQLIGVIEGIFSS 305

Query: 813 IFIAAPILLFIYDWRAKNA 831
           IF+A P+++   +W  +  
Sbjct: 306 IFLATPLVVTFANWTKRVK 324


>gi|269958371|ref|YP_003328158.1| preprotein translocase subunit SecD [Anaplasma centrale str.
           Israel]
 gi|269848200|gb|ACZ48844.1| preprotein translocase subunit SecD [Anaplasma centrale str.
           Israel]
          Length = 501

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 175/521 (33%), Positives = 274/521 (52%), Gaps = 24/521 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
                +   ++C + + + +PNF+   +L      + K + +LGLDL GG +L+LEVD  
Sbjct: 3   PIGKAVAALVLCIVSVYLVMPNFVDSDLL------LSKKKANLGLDLEGGVYLLLEVDFK 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   L   SD LR FL KE I    +      + LS   +                  
Sbjct: 57  EHVKERLYGLSDTLRDFLLKENIPYRRLYVKDGTVVLSLHSAGDYARARRF--------- 107

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                    N+ V+ T     I      +  ++   +  S++ +++R+D+ G  E  I+ 
Sbjct: 108 -------DANVTVSGTYDHALISFKDGYMKALLQGVMTDSIQNVQRRLDKSGTKEIIIKS 160

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG-FMFGVRFLRDSDGNQYL 242
            G ++I +Q+PG      ++ L+G TAK++FH +                L D+ GN Y 
Sbjct: 161 HGENKISLQVPGVYSTDSIKSLIGKTAKLTFHLLEEGKGLSEIDPIATHLLSDAAGNVYP 220

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V  KVEISG  L    +       KPVV   FD    ++  E+T+ + GK LA VLD  V
Sbjct: 221 VLKKVEISGDSLID-ASTGLNTLGKPVVYFKFDSAATKKLAEITKKHTGKQLAAVLDSVV 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           LTAP I + I  G  +ISG F ++ A  LA +L++G+LP  LN++EE+ +G  LG+ SI 
Sbjct: 280 LTAPTIREPILGGNGEISGRFGMDEAKELAVLLKSGALPAPLNVIEEKVIGPSLGAGSIA 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G  A+ A ++ + +F++VLYG  G+ A   +  N++  L  ++L+GATLTLP IAG+ L
Sbjct: 340 MGKVAMFASVISVSVFVVVLYGVLGVFAVVGLIFNIVFVLLAMTLIGATLTLPGIAGMTL 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+++D+N+L+ ERIREE R  + +  + D GF  A STIFDSNIT LI   ++F  G 
Sbjct: 400 TVGMSIDANVLIFERIREEIRAGRKLRLAADRGFRNAMSTIFDSNITTLIVAAIMFIMGS 459

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +V GFA+T+G+ IL SM +A+ + + ++   I   K   I
Sbjct: 460 VSVSGFAVTLGVGILCSMLSAVVLTKVLIDVWIHTVKSLKI 500



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 55/128 (42%), Gaps = 3/128 (2%)

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A+  LI +I   L    L G    L  +A +   +G S++  V++++R+R+ ++      
Sbjct: 367 AVVGLIFNIVFVLLAMTLIGATLTLPGIAGMTLTVGMSIDANVLIFERIREEIRAGRK-- 424

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
             R   D+     +     +++   I    M + G   +  FA+ +  GI+ +  S++ +
Sbjct: 425 -LRLAADRGFRNAMSTIFDSNITTLIVAAIMFIMGSVSVSGFAVTLGVGILCSMLSAVVL 483

Query: 816 AAPILLFI 823
              ++   
Sbjct: 484 TKVLIDVW 491


>gi|225551842|ref|ZP_03772785.1| protein-export membrane protein SecF [Borrelia sp. SV1]
 gi|225371637|gb|EEH01064.1| protein-export membrane protein SecF [Borrelia sp. SV1]
          Length = 299

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +   I      +    V   ++         +  G N+GIDF   + + +   +      
Sbjct: 1   MQRVINFSKYGSNVLIVSAVLILVGLIYTFFYHGGYNWGIDFSSRVNINLSIEKSNIKEN 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKITEIVPL 648
               + S     +   +                 +V            ++ K        
Sbjct: 61  EIKEIFSPIYKTLDVNSIFSPDQNKSEFSIMVKSNVIDYAFKTEVQKTILDKLKETFDAN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + ++  +    S  L  + +  V+ + I +LIYI +RFK  +A+ +I ++  DI   +
Sbjct: 121 IEVLDSYFIDSSFSSTLRIRSVFLVLGTFILILIYITLRFKLSYAIASILSIFHDIFFIV 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  +F IE N   + A+LT+IGYS+ND ++++DR+R N+K   T  +F ++++ SI++T
Sbjct: 181 AFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRL-TDNTFLNVLNISISQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R+V TS+  F++V  + V+    I  F++    G++V   SSIFIA+PILL +Y    
Sbjct: 240 LSRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSIFIASPILLNLYKKIK 299


>gi|325109728|ref|YP_004270796.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces brasiliensis DSM 5305]
 gi|324969996|gb|ADY60774.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces brasiliensis DSM 5305]
          Length = 1048

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/665 (13%), Positives = 189/665 (28%), Gaps = 41/665 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKK-E 84
                + +FP   P               + ++          +       +   +   E
Sbjct: 27  FTALPVAKFPQVAPPT-------------VQVKAYYPGADAETIAQTVATPIEQEVNGVE 73

Query: 85  GIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+   S     +    +T++F      +  +  V   +    +KL  + ++  + T  + 
Sbjct: 74  GMIYMSSSSASDGSYTLTVTFELGVDMDMASVLVQNRVAIAEAKLPDEVRRQGITTKKQS 133

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              +       +     A+  S   +    D++   +              +    DP+ 
Sbjct: 134 TQILQFITLFSESGDFDALFLSNYALD-VKDELSRVKGVGDVSVFGVGDYGMRIWLDPNL 192

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           LR    TT  +       N        G          +  V  +   S           
Sbjct: 193 LRARGLTTEDVVNAIQEQNVQVAAGKVGAAPAPAGTPFELTVNTQGRFSNTQ-------- 244

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    I     G R         I                             + 
Sbjct: 245 -----QFGDIIITTGEGGRVLRVRDVARIELGSESYTFDSTYRGQPAASIAIYQLPGANA 299

Query: 322 NFTIE--TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
             T     A +      +         V          S      T  +   LV++V+++
Sbjct: 300 LETAALIEAKMAELAGNSNWPGGIDYSVPFDTTRFVEASIEEVYSTLFVAVLLVVLVIYL 359

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
            +   +  ++   +I +++I T A+++ LG +L + S+ GIVL IG+ VD  I+V E   
Sbjct: 360 FLQDWRATIIPVVAIPVSLIGTFAIMAGLGFSLNMLSLFGIVLAIGIVVDDAIVVVENTS 419

Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSI 496
                  +   +           +  + +  L   V   F G   G   R FA+T+  ++
Sbjct: 420 RHLADGLAPRDAAVKAMQEITGPVIATTLVLLAVFVPTAFMGGITGQLNRQFALTISAAV 479

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           LIS   A+++  A+   ++R  K ++          L         +  +   + +  L 
Sbjct: 480 LISTLNALTMSPALCGLVLRKPKEQTFPPFRWFNSALDGITRGYAAVVGKSIRLAVVTLG 539

Query: 557 SICSICLLFTHGLN---YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               +  L   G N    G           +  +  D +      ++LQ  D  F+   G
Sbjct: 540 IYGGLLFLTGWGYNLLPTGFIPTEDQGYMFVNMQLPDGATKERTTKALQDLDKIFKETPG 599

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +++    Y      A T     V          +   +   +   + +   ++    +
Sbjct: 600 VADWINIAGYSILSGNAGTNQGTSVVIFDPWDDRKTPELSQRAIVGGLQKR-FQQMDEAI 658

Query: 674 IISAI 678
           +   I
Sbjct: 659 VFGFI 663



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/167 (10%), Positives = 64/167 (38%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +++ + +  A+ +++ L +   +    L G + N      ++ 
Sbjct: 870  MLIFGLAVLFVFLVLAAQYESWNSPAAVISVVPLAVLGVVIALLLRGADLNTYTQIGIVL 929

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LI  +  + +++ +  R+  +     +  R+    +        + T+ ++ +  LP+ V
Sbjct: 930  LIALASKNAILIVEFGREQRRD---GMEIREAAVSAARLRFRAILMTAFSSILGFLPLLV 986

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G +   +    +  G+  A   S+ +         +      +
Sbjct: 987  ASGAGAASRQAVGNAVVGGMAAATVFSLLLVPLFFYLFQNLAEIRKK 1033



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  +  + + +  T    A  G   N+ ++  ++  IG  V         + +N 
Sbjct: 363 DWRATIIPVVAIPVSLIGTFAIMAGLGFSLNMLSLFGIVLAIGIVV----DDAIVVVENT 418

Query: 749 KLY-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAF 803
             +    ++ RD   K++ E  G  + T++   ++V     + G +       FA+ ++ 
Sbjct: 419 SRHLADGLAPRDAAVKAMQEITGPVIATTL-VLLAVFVPTAFMGGITGQLNRQFALTISA 477

Query: 804 GIVVAASSSIFIAAPI 819
            ++++  +++ ++  +
Sbjct: 478 AVLISTLNALTMSPAL 493


>gi|261840234|gb|ACX99999.1| preprotein translocase subunit SecD [Helicobacter pylori 52]
          Length = 525

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|261212038|ref|ZP_05926324.1| RND multidrug efflux transporter [Vibrio sp. RC341]
 gi|260838646|gb|EEX65297.1| RND multidrug efflux transporter [Vibrio sp. RC341]
          Length = 1036

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 172/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSISRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +     TT+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVTTSDISDALNKENIESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSPEDFEYLVVKRASDGTPIYLKDVSDVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHQEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFVTGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNLFIDRLFAKLERG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSGAIRWRWTAPLVIMACIGGSYGLMQLVPAQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPMLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILDDWNE 624



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVSDVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHQ 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + V    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFVTGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ +    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIISTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|254428073|ref|ZP_05041780.1| RND transporter, HAE1 family [Alcanivorax sp. DG881]
 gi|196194242|gb|EDX89201.1| RND transporter, HAE1 family [Alcanivorax sp. DG881]
          Length = 1047

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/685 (10%), Positives = 177/685 (25%), Gaps = 46/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I   GLL      +    +  +P   P               + +   
Sbjct: 8   QRPKLAMVVGLVITFTGLLA-----MKLLPISEYPEVAPP-------------QISVSAS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVT 116
                   ++      +   +       +      N     + ++F      +    +V 
Sbjct: 50  WPGASAAIMEESVGQVIEDVVNGVEGMEYMSSSSSNNGSYSLAVTFEVGEDPDMALVRVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++     L  + +   L         +              +  +   +    + +  
Sbjct: 110 NRVKLAEPSLPAEVRAQGLTIDKRSPDILFTINLYSPDGSLDELFIANYSLLNVQNPLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              +    DP ++  L  T   +S      N        G       
Sbjct: 170 VEGVSDVSVFSSADYSMRLWMDPPQMTALGITPDDISNALREQNVQVPAGKIGAPPFDGK 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y ++ +  +                 +    I   +             I      
Sbjct: 230 LSTEYALQLEGRL-------------KDVKEFENIILRADENGAMVRLGDVARIELGQLS 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +   T +                    +         
Sbjct: 277 YSIAANYQNHPTTVMAAYLAPGANALATGDALKQALEEQSKTFPDGLEYAIGYDTTRYVE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +  GLV+++ F+ +   +  LV    I +++I TLA++ +   ++   +
Sbjct: 337 VAIQQVTTSLLMAVGLVILITFIFLGDWRPTLVPTVVIPVSLIGTLAIMLVADMSINTIT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREE--NRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G++L IG+ VD  ILV E          + S   ++          I  + +  L   
Sbjct: 397 LFGLILAIGIVVDDAILVVENTDRHLLEDPDISTRDAVTRTMEEVTGPIIATTLVLLAVF 456

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDIN 526
           V +       G     FA+T+ ++++IS   A+S+  A+   ++R K       ++ +  
Sbjct: 457 VPVALMPGITGIMYNQFAVTICVAVVISSICALSLSPAVASLVLRRKDSEPAWYRAFNKG 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +     R     V  +++                 ++ KG + + V   
Sbjct: 517 FAKITLGYSRVVGGLLGRRGLTLVLYALIMVGLFFGARAVPTGFVPMEDKGLLLVNVQLP 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               ++   + +E +Q    +    +             G          ++K       
Sbjct: 577 DAASINRTEAVIEQVQRMLDNDPAVESATMIAGFSMLTGGVQSNGGTGFVVLKHWDERPD 636

Query: 647 PLSTIQNTEIVGPKISRELIRKGIV 671
                        + + + I +  +
Sbjct: 637 FKDISLAVSARVTQQAYQTIPEAQI 661



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 81/208 (38%), Gaps = 13/208 (6%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A  + LE   K   + +  +   +T        +++    ++ V +  +   I++ 
Sbjct: 303 ATGDALKQALEEQSKTFPDGLEYAIGYDTTRYVEVAIQQVTTSLLMAVGLVILITFIFLG 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L     + + +  TL    +  +  N   +  ++  IG  V+D ++V     
Sbjct: 363 ---DWRPTLVPTVVIPVSLIGTLAIMLVADMSINTITLFGLILAIGIVVDDAILVV---- 415

Query: 746 KNMKLY---TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAI 799
           +N   +      IS RD + +++ E  G  + T++      +P+A+  G        FA+
Sbjct: 416 ENTDRHLLEDPDISTRDAVTRTMEEVTGPIIATTLVLLAVFVPVALMPGITGIMYNQFAV 475

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +   +V+++  ++ ++  +   +   +
Sbjct: 476 TICVAVVISSICALSLSPAVASLVLRRK 503



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 64/165 (38%), Gaps = 15/165 (9%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGI-------EFNL 720
            +G+  +   + IY+++      W      I  + + +   +G   + G          +L
Sbjct: 871  IGIAFALAMVFIYLFLVAQYESWSVPAAIILVVPIAVAGAIGGLLMVGQIGIPQLGALDL 930

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             A   ++ LIG +  + +++ +  R+  +     +S  +   ++          T+++  
Sbjct: 931  FAQVGLVLLIGLAAKNAILIVEFARE--RREQEGLSILEAAAEAGRLRFRAVCMTALSFV 988

Query: 781  ISVLPM-AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            + +LP+    G  +    ++     ++    +++ I  P++   Y
Sbjct: 989  LGILPLAFASGAGMFSQLSLGHT--VMWGMLAALLIGTPMIPAFY 1031


>gi|209550732|ref|YP_002282649.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209536488|gb|ACI56423.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1036

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/684 (13%), Positives = 190/684 (27%), Gaps = 39/684 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL           + ++P   P              +      
Sbjct: 7   RRPIFAWVIAITIMLAGLLAIF-----TLSISQYPDIAPTTVR---------INATYRGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + L        +       I L+F  S   +    +V   LQ 
Sbjct: 53  SAETVEKSVTTIIEDGMTGLDDLTYMTSTSSTGSASIQLTFGTSADPDIAQVQVQNKLQL 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D     +  T      +++          ++++    +     DQI   E   
Sbjct: 113 VQSQLPSDVIDAGISVTRSTSSILLVGSLVSTDGKRNSVDLGNIMSTSIEDQIQRLEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +   T + ++      N        G +          
Sbjct: 173 SINVFGSG-YAMRVWLDPFKLLKYQLTPSDVTSAIQAQNTQVSVGSLGAQPATPGQQINV 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++                     I   E             I         G 
Sbjct: 232 TITAQSQLT-------------TVADFEHIILKVEKDGATVRLSDVSRIEIGQESYGGGS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T         ++  G                   S   
Sbjct: 279 RYNGQPSTGFAVNLAIGANAIDTAARVRSALEVIGRGLPAGVEITYPYDTTPFVELSIEK 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +VL + +   +  L+   ++ + ++ T  +L++ G ++   ++  +V
Sbjct: 339 VVHTLIEAIVLVFVVLLIFLQNLRATLIPTIAVPVVLLGTFGVLAVTGYSINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     + + S   + +         I    +      + + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERIMSEEKLSPLEATEKSMGEITGAIVGIALVLTAVFIPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFF 532
           GG      R F+IT+  ++L+S   A+ +  A+   +        K       N      
Sbjct: 459 GGSTGIIYRQFSITIVSAMLLSALVALVLTPALCATMLKPVGEHRKHRVGDWFNRNFTRS 518

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY--GIDFKGGIQLGVLANRPVD 590
                 AI ++  R   V +  L        LFT   +     + +G +   V       
Sbjct: 519 TNGYIGAIGYLLKRPIRVMLVFLLVGAGCAYLFTRLPSSFLPQEDQGVLLTIVTTPPGST 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               ++ +E ++      +    E  F        G       V   +K       P  +
Sbjct: 579 TQQTQAVVEKVEKYYRENEKDAVESVFGALGFGFNGSGQNSAIVFTKLKDFSKRTDPTLS 638

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
            Q+      +    +    +  ++
Sbjct: 639 AQSVVNRALRNFFAIREAQVFALL 662



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 75/218 (34%), Gaps = 6/218 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +      +                 +++     +    + I   +P 
Sbjct: 259 VRLSDVSRIEIGQESYGGGSRYNGQPSTGFAVNLAIGANAIDTAARVRSALEVIGRGLPA 318

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                            I K +  +I + + + + + I  +     L     + + +  T
Sbjct: 319 GVEITYPYDTTPFVELSIEKVVHTLIEAIVLVFVVLLIFLQNLRATLIPTIAVPVVLLGT 378

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  A+ G   N   + A++  IG  V+D +VV + +     +    +S  +  +KS+ E
Sbjct: 379 FGVLAVTGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERIMSEEKLSPLEATEKSMGE 436

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
             G  V  ++      +PMA +GGS       F+I + 
Sbjct: 437 ITGAIVGIALVLTAVFIPMAFFGGSTGIIYRQFSITIV 474



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 66/169 (39%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   IS + + + +   ++ W      I  + + I   L    LFG   ++     +
Sbjct: 866  QAPMLYAISVLVVFLCLAALYESWSIPFSVIMAVPVGILGALTAATLFGQANDVYFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT IG +  + +++ +  +       + +   +   ++    L   + TS+A  + V+P+
Sbjct: 926  LTTIGLAAKNAILIVEFAKD---RMESGMGLYEATLEAARLRLRPIIMTSLAFILGVVPL 982

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+    G +   +  I +  G++ A    IF      + I    A   +
Sbjct: 983  AIATGAGSAAQNAIGIGVLGGMLAATMLGIFFVPSFFVVIRRIFATRGK 1031


>gi|15594998|ref|NP_212787.1| preprotein translocase subunit SecF [Borrelia burgdorferi B31]
 gi|218249388|ref|YP_002375153.1| protein-export membrane protein SecF [Borrelia burgdorferi ZS7]
 gi|223889351|ref|ZP_03623937.1| protein-export membrane protein SecF [Borrelia burgdorferi 64b]
 gi|6647845|sp|O51597|SECF_BORBU RecName: Full=Protein-export membrane protein secF
 gi|2688573|gb|AAC66992.1| protein-export membrane protein (secF) [Borrelia burgdorferi B31]
 gi|218164576|gb|ACK74637.1| protein-export membrane protein SecF [Borrelia burgdorferi ZS7]
 gi|223885037|gb|EEF56141.1| protein-export membrane protein SecF [Borrelia burgdorferi 64b]
          Length = 299

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +   I      +    V   ++         +  G N+GIDF   + + +   +      
Sbjct: 1   MQRVINFSKYGSNVLIVSAVLILVGLIYTFFYHGGYNWGIDFSSRVNINLSIEKSNIKEN 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKITEIVPL 648
               + S     +   +                  V            ++ K        
Sbjct: 61  EIKKIFSPIYKTLDVNSIFSPDQNKSEFSIMVKSDVIDYAFKTEVQKTILDKLKETFDAN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + ++  +    S  L  + I  V+ + I +LIYI +RFK  +A+ +I ++  DI   +
Sbjct: 121 IEVLDSYFIDSSFSSTLRIRSIFLVLGTFILILIYITLRFKLSYAIASILSIFHDIFFIV 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  +F IE N   + A+LT+IGYS+ND ++++DR+R N+K   T  +F ++++ SI++T
Sbjct: 181 AFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRL-TDNTFLNVLNISISQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R+V TS+  F++V  + V+    I  F++    G++V   SS+FIA+PILL +Y    
Sbjct: 240 LSRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK 299


>gi|113476010|ref|YP_722071.1| acriflavin resistance protein [Trichodesmium erythraeum IMS101]
 gi|110167058|gb|ABG51598.1| acriflavin resistance protein [Trichodesmium erythraeum IMS101]
          Length = 1044

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/620 (10%), Positives = 177/620 (28%), Gaps = 23/620 (3%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++++ ++  +GL+        Q  +D  P+                  +  +  
Sbjct: 11  KKPVPTLVMFLVLTVVGLMS-----FFQLGIDNLPNIDIPLV---------SVTVTQQGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L        ++    +   +SF      +   + V   +  
Sbjct: 57  GPTELETQVTKKVEDAVAGLGDIEQLKSTVTDGLSTTVISFDLGVDSDRATNDVRNAIDK 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    ++          +++   +        E S  + ++    I       
Sbjct: 117 IRQDLPPDVNDPIITRIEIGGDGPIMT-YAVASDKRSVEELSELVDKEISRAILNVPGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++  E  P RL  L  T  +++      N +  G          +     
Sbjct: 176 QINRIGGADREILIELSPQRLESLGITATQVNDQIRALNANIPGGRSQTGGTEKNIRTLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E    +    +   +    P +    V   F+E     +            +     R
Sbjct: 236 SAETVEALKEYQIILPSGGAVPLSSVGKVIDGFEETRQTAWLLEKNSEGKALGSEQNLVR 295

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +     +      A L           +          S   
Sbjct: 296 NNIGKPVVAFGVVRSTGSTLVTVEKNVRKTVAKLEKTLPEDVDLQLIFTLATDIEQSYQA 355

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I + L +I++ + +   +  +V   ++ L+++ T  ++  L  TL   ++  + 
Sbjct: 356 SIDALVIGSILTVIIVGIFLRDWRPTIVTAVALPLSILPTFLVMRALNYTLDGMTLLALA 415

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I + E I +   K ++ F +   G +     +  +  T +   + + F G
Sbjct: 416 LAMGNLVDDAICMIENIEQHINKGKNPFQAALDGSAEIGLAVVATTATIVAVFLPVAFMG 475

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ ++ + S   A ++   +   +++++++K+    P   +       
Sbjct: 476 GIPGKFFKPFGITVAVATMFSTLVATTMTPMLGARLLKHRRLKTSPGFPEHNYKQRKFRP 535

Query: 539 -----AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                               I F      +        G + +G   + +  +    L+ 
Sbjct: 536 YSQLLNWALRHKIITLAIAVIFFISSLQLIPLLPKGLTGAEDRGVSIVSLELSPGSTLAE 595

Query: 594 VRSNLESLQIGDISFQNFDG 613
                + +       Q    
Sbjct: 596 TEQATQQIMQLLQENQVVTS 615



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 69/235 (29%), Gaps = 11/235 (4%)

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             ++   N          ++      V   + +     K+ + +P               
Sbjct: 290 EQNLVRNNIGKPVVAFGVVRSTGSTLVTVEKNVRKTVAKLEKTLPEDVDLQLIFTLATDI 349

Query: 663 RELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
            +  +  I  ++I +I  +I +      W   +     L L I  T           +  
Sbjct: 350 EQSYQASIDALVIGSILTVIIVGIFLRDWRPTIVTAVALPLSILPTFLVMRALNYTLDGM 409

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            + A+   +G  V+D + + + +    +      +          E     V T+     
Sbjct: 410 TLLALALAMGNLVDDAICMIENI---EQHINKGKNPFQAALDGSAEIGLAVVATTATIVA 466

Query: 782 SVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             LP+A  GG        F I +A   + +      +A  +   +     K+ R+
Sbjct: 467 VFLPVAFMGGIPGKFFKPFGITVAVATMFSTL----VATTMTPMLGARLLKHRRL 517



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 60/141 (42%), Gaps = 7/141 (4%)

Query: 672  GVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + +S + +  I + +   + + +  +  L L I   L    +F  E  L A+  ++ L+
Sbjct: 873  ALGLSVLCIYAILVLLYNNFLYPIVILVALPLSIGGALLGLLIFQKELGLFALIGIVLLM 932

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ D    ++      ++    + ++    L   + T+ +    +LP+A+  
Sbjct: 933  GLVTKNAILLVDC---SLANEEKGMARFHAVREAGISRLRPILMTTFSTMAGMLPIALEL 989

Query: 789  -WGGSVIGSFAIPMAFGIVVA 808
              GG V    AI +  G+ V+
Sbjct: 990  GAGGPVRSPMAIAVIGGLTVS 1010


>gi|116624393|ref|YP_826549.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227555|gb|ABJ86264.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1047

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/552 (12%), Positives = 156/552 (28%), Gaps = 33/552 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM-PKNRISLGLDLRGGSHLVLEV 60
           R      +L + +   G++           +   P    P   +S G  L GG       
Sbjct: 9   RRPIATSLLMAGVALFGVIA-----YENLPVSDLPQVDYPTITVSAG--LPGG------- 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D +   +    +   + +      + +  Q    ITL F  SR  +     V   + 
Sbjct: 55  -NPDTMASAVATPLERQFTAIAGLDSMISNSGQGSTSITLQFDLSRDIDGATVDVETAIA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L                   ++S   +        +           +I + E  
Sbjct: 114 EALPLLPPGMPTPPSFRKVNPGDQPIIS-LFLTSPTMRLSDLDEYAETMMAQRISMVEGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  + DP+ L        ++       N +                  
Sbjct: 173 AQVQVFGSAKYAVRVQVDPNELAARGIGLNEVDAALRNWNVNVPTGTLYGDHTAYQIQVN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +               +           + +   +G       + ++      +    
Sbjct: 233 GQL-------------MRSQAYKPLIVAYKNGAPVRLGDVANVIDSVEDDKNFSRIFGAE 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +     +    L  + +A   P     +          +  
Sbjct: 280 YGKDGTTGVSLAVMRQPGSNTIEVTDNIKRLLPVFQAQMPPSVHLGIRGDRSKNIREAFQ 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T A    LV++V+F+ +      ++   ++  ++I T +++ LL  +L   S+  +
Sbjct: 340 DIQFTMAATLALVIMVIFLFLRNFSATMIPAMALPFSIIGTFSVMYLLNFSLNNISMMAL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L IG  VD  I++ E I     K +    +   G      TI    ++     + + F 
Sbjct: 400 ILSIGFVVDDAIVMLENIVRHIEKGEKPMEAALAGSREIGFTIVSMTLSLGAVFIPILFM 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R FA+T+  +ILIS   +IS+   +    +R  K +   +       +    
Sbjct: 460 AGILGRLFREFAVTICTAILISGMVSISLTPMLCSRFLRENKAEKHGVFYRVMEGIFNWT 519

Query: 538 IAIQFMRARFWG 549
           + I  +  ++  
Sbjct: 520 LHIYAVTLKWVL 531



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 92/253 (36%), Gaps = 16/253 (6%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ V  ++E  +     F    G+               + T  +    K++  +    
Sbjct: 258 DVANVIDSVEDDKNFSRIFGAEYGKDGTTGVSLAVMRQPGSNTIEVTDNIKRLLPVFQAQ 317

Query: 650 TIQNTEIVGPKISRELIRKGI------VGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
              +  +       + IR+        +   ++ + M+I++++R  +   +     L   
Sbjct: 318 MPPSVHLGIRGDRSKNIREAFQDIQFTMAATLALVIMVIFLFLR-NFSATMIPAMALPFS 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T     L     N  ++ A++  IG+ V+D +V+ + +   ++         +    
Sbjct: 377 IIGTFSVMYLLNFSLNNISMMALILSIGFVVDDAIVMLENI---VRHIEKGEKPMEAALA 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
              E +G ++ +   +  +V    ++   ++      FA+ +   I+++   SI +  P+
Sbjct: 434 GSRE-IGFTIVSMTLSLGAVFIPILFMAGILGRLFREFAVTICTAILISGMVSISL-TPM 491

Query: 820 LLFIYDWRAKNAR 832
           L   +    K  +
Sbjct: 492 LCSRFLRENKAEK 504



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/336 (12%), Positives = 107/336 (31%), Gaps = 23/336 (6%)

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
            I   +    +D +  +   L  + I+     A       +I        +L      Y  
Sbjct: 711  IKTPRINIVLDRDRAAALHLNWNTISSTLYDAFGPQFASTIYAPTNQYRVLLEMLPKYQQ 770

Query: 574  DFKGGIQLGVLAN--RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
               G   + + ++    + L  V   + +     I              L+       A 
Sbjct: 771  HTDGLDMIYLKSDNGDMIPLKAVAKMVANAGPQSIPHSGQLPSVTISFALKPGTSLGEAT 830

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
            T + E  K  +   +  +     ++    +     R   + +I++   + I + + ++ +
Sbjct: 831  TAIEEAAKATLPATITGTFQGTAKVFQDSM-----RNMGILLIVAIAVVYIVLGVLYESY 885

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  ++ L       L    LF ++ ++ +   ++ LIG    + ++  D   +    
Sbjct: 886  VHPLTILSGLPSAGFGALLTLILFKVDLSIYSFVGLIMLIGIVKKNAIMQIDFALE--AE 943

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                ++ RD I +         + T+MAA +  LP+A+    GG       + +  G+  
Sbjct: 944  RKEGMAPRDAIYEGCLIRFRPIMMTTMAALLGGLPIALGYGAGGEARKPLGLAVVGGLAF 1003

Query: 808  AASSSIFIAAPI----------LLFIYDWRAKNARI 833
            +   ++++   +                 +     +
Sbjct: 1004 SQLMTLYLTPVVYTYMAAALGKWNDWKARKKPRKAL 1039


>gi|296102119|ref|YP_003612265.1| acridine efflux pump [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295056578|gb|ADF61316.1| acridine efflux pump [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 1031

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/540 (13%), Positives = 152/540 (28%), Gaps = 33/540 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G+L       P+  + ++P   P   I           +      
Sbjct: 8   RPVFAWVVALFIVLTGVLSI-----PRLPVAQYPVVAPPGII---------ITVSYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            D +N  +    +   S +        S        IT++F      +     +   ++ 
Sbjct: 54  PDVMNTSVVSLIEREISGVDNLLYFESSSDTTGSASITVTFKPGTDIKLAQMDLQNQIKI 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    ++N +         +++             + S    R   D++       
Sbjct: 114 VEPRLPQSVRQNGINVEAANAGFLMMVGLKSTSGKFQEADLSDYFARNISDELRRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP +L     + + +       N        G     +  G  Y
Sbjct: 174 KVQLFG-GEKALRIWLDPMKLHSYGLSVSDVLTAVSQQNTIVSPGRTGDEPATEGQGVTY 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K ++S +                       +    R        I   L     G 
Sbjct: 233 PITVKGQLSSVEAFRH-------------ITLKSDTTGARLQLSDVARIESGLQSYAYGI 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +   T          L           V          S   
Sbjct: 280 RENGVPATAAAIQLSPGANAISTASGVRARIDELSRVLPEGMTFTVPFDTAPFVKLSIMK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+ + +   +  L+      + ++ T  ++ L G ++ + ++ G+V
Sbjct: 340 VVQTFVEAMVLVFLVMLLFLHKIRCTLIPAIVAPVALLGTFTIMLLSGYSINILTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +   S   +           I    +      + + F 
Sbjct: 400 LAIGIIVDDAIVVVENVERLMVEKALSPREATRQAMQEITPAIAGITLVLTAVFIPMGFA 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F I+M +SIL+S F A+++  A+   +++  +         + +F     
Sbjct: 460 EGSVGIIYRQFCISMAISILLSAFLALTLTPALCATLLKPHEANKRGAGKFATWFNAHFH 519



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 83/255 (32%), Gaps = 7/255 (2%)

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +     +    L +         V  S   +L       Q    +    +R
Sbjct: 760  RVQQVIVQADAPYRMQPEQFLALSVKNRTGQMVPVSAFATLSWNVAPQQLNRYQGYPAIR 819

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +        +    ++ ++    E+      +       + + E    G++ + I  +  
Sbjct: 820  ITGSAASGESSGTAMKTMEALAREMPAGIAGEWAGSSLQEKASESQLPGLIVLSI-LVVF 878

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++   +   W      +  + L +   +    + G+  ++     ++TLIG S  + +++
Sbjct: 879  MVLAALYESWSIPFAVMLVVPLGLIGAVVAVHIAGMTNDVFFKVGMITLIGLSAKNAILI 938

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSF 797
             +  R   +L     +      ++  + L   + TS+A  + V+P+ +  G+      + 
Sbjct: 939  VEFAR---QLQREGETIVAATLQAARQRLRPVLMTSLAFTLGVIPLMLARGASDSTQHAI 995

Query: 798  AIPMAFGIVVAASSS 812
               +  G++     +
Sbjct: 996  GTGVFGGMISGTFLA 1010



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 57/152 (37%), Gaps = 13/152 (8%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           IR     A+ A   L      T     L G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 362 IRCTLIPAIVAPVAL----LGTFTIMLLSGYSINILTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVI--GSFAIP 800
               +   ++S R+   +++ E         +   ++ + +      G   I    F I 
Sbjct: 417 -ERLMVEKALSPREATRQAMQEITPAI--AGITLVLTAVFIPMGFAEGSVGIIYRQFCIS 473

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           MA  I+++A  ++ +   +   +      N R
Sbjct: 474 MAISILLSAFLALTLTPALCATLLKPHEANKR 505


>gi|308185337|ref|YP_003929470.1| preprotein translocase subunit SecD [Helicobacter pylori SJM180]
 gi|308061257|gb|ADO03153.1| preprotein translocase subunit SecD [Helicobacter pylori SJM180]
          Length = 526

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 154/545 (28%), Positives = 274/545 (50%), Gaps = 31/545 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFVCALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R + L+  +A +    V              +    G
Sbjct: 161 VIQQGREEISVQLPGIKTLEEERRAKDLISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DS+     A++ G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSVKTSIIALIGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIIGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFLI 534
                
Sbjct: 521 VKNKR 525



 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ ++  I+ +I   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSVKTSIIALIGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+ + +  +G   I  FA+    GI+ +  ++I
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAI 495


>gi|56479464|ref|YP_161053.1| cation/multidrug efflux pump protein [Aromatoleum aromaticum EbN1]
 gi|56315507|emb|CAI10152.1| Cation/multidrug efflux pump protein [Aromatoleum aromaticum EbN1]
          Length = 1024

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/508 (13%), Positives = 147/508 (28%), Gaps = 31/508 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +  +P+                          + V   +    ++  + ++   +
Sbjct: 29  YSRLTVREYPNIDEPVVT---------VDTTYTGASAEIVESQVTKPLEDSLAGIEGVDV 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                RQ +++IT+ F   R  ++ A  V   +     +L  D  + ++         I+
Sbjct: 80  IQSISRQERSQITIRFRIERDADSAAADVRDRVSRARRQLPDDIDEPVIAKVEADASPII 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               + D     ++E S    R    ++                  +    D  RL    
Sbjct: 140 WIAFSSD--RHSSLELSDIASRIVKPRLQTLSGAADARVFGERRYSMRIWLDRDRLAAFN 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T   +       N          R    +   Q  ++                 +P+  
Sbjct: 198 LTPQDVEDAIRRQNVELPAGRIESREREFAVVAQTDLD-----------------EPQEF 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           + VV         R         +                         ++  +      
Sbjct: 241 EAVVVREPGTADGRPVRIRDVGRVEVAAQSERTLVRFMGKPAVSLGLIKQSVANPLDLKR 300

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
               +  +L A         +          S +    T      LV ++ F  +   + 
Sbjct: 301 GLAEMMPVLEAELPEGMTMSIANDTTVFIERSIASVFATIWEAVLLVAVICFFFLRNWRA 360

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            LV   +I ++++    L+ + G ++   ++  +VL IGL VD  I+V E I        
Sbjct: 361 MLVPLVTIPVSLVGAFTLMLVFGFSINTLTLLALVLAIGLVVDDAIVVLENIYRHVEDGM 420

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTA 503
               +   G       +    IT       + F  G        FA+T+  ++++S F A
Sbjct: 421 EPVQAAFRGAREIGFAVVAMTITLAAVYAPVAFMTGRTGKLFTEFALTLAGAVIVSGFVA 480

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           +++   M   ++R+++      N + RF
Sbjct: 481 LTLSPMMCSKLLRHEQRHGRFYNAIERF 508



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/171 (11%), Positives = 57/171 (33%), Gaps = 9/171 (5%)

Query: 666  IRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
                 + +        IY+ +      +      + T+ L +T  L      G   N+ +
Sbjct: 846  TSSASLALTFVLALAFIYLVLAAQFESFRDPFIIMLTVPLSMTGALAALYFTGGTLNVYS 905

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++TL+G      +++ +      +L     +  + +  +    L   + T+ A  + 
Sbjct: 906  QIGLVTLVGLITKHGILIVEFAN---QLRDDGAALTEAVIDASVLRLRPILMTTGAMVLG 962

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +P+A+    G          +  G+++    ++F+   +   +       
Sbjct: 963  SIPLALATGAGAESRQQIGWVIVGGLLLGTVFTLFVVPTVYTLLARRERTR 1013



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 81/249 (32%), Gaps = 7/249 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PV +  V     + Q      +        L  ++    + +   R L  +   +   +P
Sbjct: 255 PVRIRDVGRVEVAAQSERTLVRFMGKPAVSLGLIKQSVANPLDLKRGLAEMMPVLEAELP 314

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                +            I      +  + + + +  +   + W   L  + T+ + +  
Sbjct: 315 EGMTMSIANDTTVFIERSIASVFATIWEAVLLVAVICFFFLRNWRAMLVPLVTIPVSLVG 374

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                 +FG   N   + A++  IG  V+D +VV + +    +     +       +   
Sbjct: 375 AFTLMLVFGFSINTLTLLALVLAIGLVVDDAIVVLENI---YRHVEDGMEPVQAAFRGAR 431

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     V  ++       P+A   G        FA+ +A  ++V+   ++ ++  +   +
Sbjct: 432 EIGFAVVAMTITLAAVYAPVAFMTGRTGKLFTEFALTLAGAVIVSGFVALTLSPMMCSKL 491

Query: 824 YDWRAKNAR 832
                ++ R
Sbjct: 492 LRHEQRHGR 500


>gi|86141609|ref|ZP_01060155.1| multidrug resistance protein, AcrB/AcrD family protein
           [Leeuwenhoekiella blandensis MED217]
 gi|85832168|gb|EAQ50623.1| multidrug resistance protein, AcrB/AcrD family protein
           [Leeuwenhoekiella blandensis MED217]
          Length = 1063

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/584 (11%), Positives = 154/584 (26%), Gaps = 43/584 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G             ++RFP   P               + + V 
Sbjct: 7   KKPVFTLVITIVLVLAGAASI-----TSLPVERFPEIAPP-------------SVSVAVY 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVT 116
                   + +     +   L   E +   +       + ++T+ F      +  A  + 
Sbjct: 49  YPGGNAETVAKSVLLPIEEALNGTENMTYANSTATNSGRGRVTIYFKPGTNPDQAAVDIQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  +  K+  +  +  +  T   + SI+                +         ++  
Sbjct: 109 NRISVITEKIPPEVTEAGISVTKRMKGSIMTINIFSKDSTYDETFLNAYTRINIRRELKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +     +    +    +P ++     T  ++       N       FG       
Sbjct: 169 VEGLAEASILRQRDYAMRIWLNPQKMASYNLTPREVYNQVKDQNFEAAPGKFGENSDELF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                            +         +  +    +        +        I    + 
Sbjct: 229 ----------------EIVMKYDGRFSEIEEYENLVIKTNEDGAQLRLKDVARIEFGASN 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +     E    +    +          +         
Sbjct: 273 YTSENRLDGKPSVTIDIVQMNGANAKTIDERIREILEEQKKLFPEGIDYEITYSVRDQID 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S S    T      LV IV+F+ +   +  ++   SI ++++ T   L+++GA++ + S
Sbjct: 333 ESMSQVMHTLVEAFILVFIVVFIFLQDFRATIITAISIPVSLLGTFFFLNIIGASMNVLS 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E I E+      S   ++          I    +      +
Sbjct: 393 MLSLVLAIGIVVDDAIVVMEAIHEKMTHHGLSARKAVSAAMDEITGAIISITVVIAAVFL 452

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      + FA T+  ++LIS   A+++   +       KK             
Sbjct: 453 PVAFLSGPVGVFYQEFAYTIIFAVLISAINALTLTPVLTKIFFGKKKRDKKKRGMAKTVS 512

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
            +      +  + +      S         L             
Sbjct: 513 ELRQVRKAKVAKRKGLRKFDSGFDKFTDKYLNVVRWFLNHKWIG 556



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 99/276 (35%), Gaps = 13/276 (4%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             +  +         + +    L +  N       ++                  +    
Sbjct: 225 DELFEIVMKYDGRFSEIEEYENLVIKTNEDGAQLRLKDVARIEFGASNYTSENRLDGKPS 284

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVII 675
           V +     +      + E +++ + E   L        +   +  ++       +  ++ 
Sbjct: 285 VTIDIVQMNGANAKTIDERIREILEEQKKLFPEGIDYEITYSVRDQIDESMSQVMHTLVE 344

Query: 676 SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           + I + I ++I    +   +    ++ + +  T  F  + G   N+ ++ +++  IG  V
Sbjct: 345 AFILVFIVVFIFLQDFRATIITAISIPVSLLGTFFFLNIIGASMNVLSMLSLVLAIGIVV 404

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWG- 790
           +D +VV + + + M  +   +S R  +  +++E  G  +  S+   I+ + +    + G 
Sbjct: 405 DDAIVVMEAIHEKMTHH--GLSARKAVSAAMDEITGAII--SITVVIAAVFLPVAFLSGP 460

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G     FA  + F ++++A +++ +   +    + 
Sbjct: 461 VGVFYQEFAYTIIFAVLISAINALTLTPVLTKIFFG 496



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
             I       +   L  + +L + I        L G++ N+     ++ LIG    + +++
Sbjct: 900  FILASQYESFLLPLAVMLSLPVGIFGVFAAINLAGLDNNIYVQIGIIMLIGLLAKNAILI 959

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---F 797
             + +    +     ++  D + ++    +   + TS+A  + ++P+    GS        
Sbjct: 960  VEFV---AQKRRAGLNAFDAVLEASALRIRPIIMTSLAFTVGLVPLMFAEGSSAQGNHSV 1016

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +I  A G+V      IF+   +         K
Sbjct: 1017 SIGTAGGMVGGIVLGIFVIPVMAYIFQMLHDK 1048


>gi|189346942|ref|YP_001943471.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chlorobium limicola DSM 245]
 gi|189341089|gb|ACD90492.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chlorobium limicola DSM 245]
          Length = 1062

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/521 (12%), Positives = 140/521 (26%), Gaps = 43/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G++      + +  + +FP   P               +V+    
Sbjct: 8   RPVLATVVSIVLVILGIV-----GMGRLPVTQFPDIAPP-------------SVVVTAMY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +     +    IT+ F      +  A  V  
Sbjct: 50  PGASAETIARSVAPSLEEAINGVENMTYMTSTSGNDGMLTITVYFKLGTDADQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L     +  + T  ++   I++     D                 I  I   
Sbjct: 110 RVSQAQSQLPSAVIERGITTVKQQNSMIMVISLISDSPNYDETFLQNYAKINLIPDIKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P +L     T A+++      N       FG       +
Sbjct: 170 PGVGQATVFGNKDYSMRIWLKPQQLAAYSLTPAEVAAAIQSQNIEAAPGKFGEGSREAME 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                      T      +        +        I       
Sbjct: 230 FIIKYRGK----------------FNTTEDFGNIVIRSGQDGMQLRLRDVARIELGSYDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +             A  + N        +               V      +   
Sbjct: 274 TVNSKVDGHPSVTMAIYQAAGSNANAIQTELQQVLDKASESLPAGISYAVPYSTKKSLDE 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ + ++ T   ++L G ++ L ++
Sbjct: 334 SIEQVIHTLLEAFALVFLVVFIFLQDFRSTLIPAIAVPVAIVGTFFFMNLFGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +   +  S   +     S     I    +      + 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHAKMEHRGLSAAPATASAMSEITGAIVSITLVMSSVFLP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F  G      R FA T+  +ILIS   A+++  A+    
Sbjct: 454 VGFMEGPTGVFYRQFAFTLATAILISAVNALTLSPALCALF 494



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 90/255 (35%), Gaps = 9/255 (3%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +    + + + +      +R              N   + +  V +            + 
Sbjct: 242 EDFGNIVIRSGQDGMQLRLRDVARIELGSYDYTVNSKVDGHPSVTMAIYQAAGSNANAIQ 301

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWY 691
             +++ + +         +  V     + L   I + I  ++ +   + + ++I    + 
Sbjct: 302 TELQQVLDKASESLPAGISYAVPYSTKKSLDESIEQVIHTLLEAFALVFLVVFIFLQDFR 361

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L     + + I  T  F  LFG   NL  + A++  IG  V+D +VV + +    K+ 
Sbjct: 362 STLIPAIAVPVAIVGTFFFMNLFGFSINLLTLFALVLAIGIVVDDAIVVVEAVH--AKME 419

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
              +S       +++E  G  V  ++      LP+    G        FA  +A  I+++
Sbjct: 420 HRGLSAAPATASAMSEITGAIVSITLVMSSVFLPVGFMEGPTGVFYRQFAFTLATAILIS 479

Query: 809 ASSSIFIAAPILLFI 823
           A +++ ++  +    
Sbjct: 480 AVNALTLSPALCALF 494



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 73/249 (29%), Gaps = 10/249 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   V L+ V S         +   N          ++       A T + E+  + + 
Sbjct: 796  RSGSMVPLTSVASLKRVYGPETVDHFNLFNAIGITANVKPGYSTGQAITAIEEVAGQTLP 855

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                      +        +      I  + ++ +   +       +      + ++   
Sbjct: 856  AGYSYDWKGMSREETASGGKA---AAIFVLCLAFVY-FLLAAQYESYILPFAVMFSIPTG 911

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +        L GI+ N+    A++ LIG    + +++ +    +++             +
Sbjct: 912  LLGVFLGIKLAGIDNNIYVQVAIVMLIGLLAKNAILIVE---YSIQRRRAGKDLVLSALE 968

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPIL 820
                 L   + TS A  + +LP+    G       S       G++      IFI   + 
Sbjct: 969  GSRARLRPILMTSFAFVVGLLPLLWASGPSALGNHSIGWAAVGGMLSGVLLGIFIIPVLF 1028

Query: 821  LFIYDWRAK 829
            +     + +
Sbjct: 1029 VIFQALQER 1037


>gi|291450325|ref|ZP_06589715.1| export membrane protein secD [Streptomyces albus J1074]
 gi|291353274|gb|EFE80176.1| export membrane protein secD [Streptomyces albus J1074]
          Length = 564

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 113/574 (19%), Positives = 220/574 (38%), Gaps = 47/574 (8%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
            +IL +++   G +    +  P+                LG+DL GG+ + L+   +   
Sbjct: 2   ALILIALVALTGGMFLSGHTTPR----------------LGIDLAGGTSITLQARSEPGQ 45

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
                   +      +   +   G+    ++    + I ++      ++   ++V    Q
Sbjct: 46  ESAVNQTNMNTAVGIIERRVNGLGVSEAEVQTQGTDHIIVNIPKGTNEKQAREQVGTTAQ 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE-QSMEIIRQRIDQIGISES 179
                +            +    +              A + +S E       Q   +  
Sbjct: 106 LFFRPVLQLASGEPAPEGSPSPSASGSPDEAEQGDGDKATDGKSGEPEATPTTQGRAASG 165

Query: 180 TIQRLGSHRILIQLPGEQDPS---------RLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
            ++   +        G+ DP+             L+     ++                 
Sbjct: 166 ALKADATPSPSASADGKADPTPSPSASEGGADEALMKKFEALTCTDTEERTDAAEGTKPS 225

Query: 231 RF-----LRDSDGNQYLVEDKVEISGIHLNG-ATANFDPKTHKPVVDISFDEMGARRFFE 284
                         +  +     ++G  ++    A         +V++ F   G ++F +
Sbjct: 226 EPIVACGQNSQGQWEKYILGPSAVAGTEIDDATAAIDQQGAQGWLVNMEFTNKGKKQFAD 285

Query: 285 VTRDN-----IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
           VT D           A+VLDG V++AP + + +  G AQISG+FT E+A  LA ML  G+
Sbjct: 286 VTTDISAKPSPQNQFAIVLDGDVVSAPYVREPLTGGTAQISGSFTQESAQDLANMLSYGA 345

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           LP+        +V A LG + +  G  A   GL+L++++++V Y    L+A  S+ ++  
Sbjct: 346 LPLSFVEESVTSVTAALGGEQLEAGLIAGGIGLILVIVYLVVYYRGLSLIAIISLLMSAA 405

Query: 400 LTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           LT  ++ LLG      L LP++ G ++ IG+  DS I+  ER+R+E R+ +S+  ++  G
Sbjct: 406 LTYTIMVLLGPAIGFALNLPAVCGAIVAIGITADSFIVFFERVRDEIREGRSLQPAVARG 465

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           + RA  TI  S+  + ++  VLF    G V+GFA T+GL+ L+ +       + ++  + 
Sbjct: 466 WPRARRTILVSDFVSFLSAAVLFVVTVGKVQGFAFTLGLTTLLDVVVVFFFTKPLLTILA 525

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           R K   S           +     ++  R     
Sbjct: 526 RKKFFASGHPWSGLDPKRLGVKPPLRRARRTVPA 559



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 88/266 (33%), Gaps = 11/266 (4%)

Query: 567 HGLNYGIDFKGGIQL-GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
             +N     KG  Q   V  +     S        L    +S                  
Sbjct: 269 WLVNMEFTNKGKKQFADVTTDISAKPSPQNQFAIVLDGDVVSAPYVREPLTGGTAQISGS 328

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               +   +  M+      +      ++   V   +  E +  G++   I  I +++Y+ 
Sbjct: 329 FTQESAQDLANMLSYGALPL--SFVEESVTSVTAALGGEQLEAGLIAGGIGLILVIVYLV 386

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + ++   +L AI +L++    T     L G       NL AV   +  IG + +  +V +
Sbjct: 387 VYYR-GLSLIAIISLLMSAALTYTIMVLLGPAIGFALNLPAVCGAIVAIGITADSFIVFF 445

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      S +  + +         + +   +F+S   + V     +  FA  +
Sbjct: 446 ERVRDEIRE---GRSLQPAVARGWPRARRTILVSDFVSFLSAAVLFVVTVGKVQGFAFTL 502

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWR 827
               ++      F   P+L  +   +
Sbjct: 503 GLTTLLDVVVVFFFTKPLLTILARKK 528


>gi|332142383|ref|YP_004428121.1| RND multidrug efflux transporter MexF [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327552405|gb|AEA99123.1| RND multidrug efflux transporter MexF [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 1040

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/697 (10%), Positives = 190/697 (27%), Gaps = 50/697 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                + 
Sbjct: 10  RPIFAGVLSLLIFIGGAIAVW-----QLPITEYPEVVPPTVVVT-------------ANY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  L   +   E +   S +   +    +T++FA     ++    V  
Sbjct: 52  PGANPEVIAETVATPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDPDDATTLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +VT        ++            +  S    +   D++   
Sbjct: 112 RVNRATPRLPQEVQRLGVVTEKSSPDLTMVVHLTSPDNRYDMLYLSNYADQFVKDELARI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L  L      ++      N        G +    S 
Sbjct: 172 NGVGQVRLFGAGEFSMRVWLDPNKLAALQLNPGDVAAAIADQNQQAAAGSLGAQPT-GSS 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q L+  +  +                 +    I                 I       
Sbjct: 231 EFQLLINVRGRLKDEA-------------EFENIIVKSGENGEITRLKDIARIELGADNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L                +     +      A L           +         G
Sbjct: 278 ALRSLLNNNPAAAIPIFQAPGSNAIQISDDVRARMAELSQMFPNGLEYDIVYDPTVFVRG 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   ++ ++++ T A + L+G +L   S+
Sbjct: 338 SIEAVVDTLFEAVLLVVLVVVLFLQTWRASIIPLVAVPISLVGTFAFMQLMGFSLNALSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     + +S F +           I  + +      +  
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERNIAEGKSPFDATVQAMKEVTGPIIATTLVLAAVFIPT 457

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIF----------IIRYKKMKSID 524
            F     G   + FA+T+ +S +IS   ++++  A+              +     K   
Sbjct: 458 AFMSGLTGQFYKQFALTITISTVISAINSLTLSPALSALLLKPHGKANDWLTRGMDKVFG 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               + F  + +  + ++  A    +  S +  +    L+      +     G +     
Sbjct: 518 RFVFTPFNRVFERGSKKYTGAVGGLIRKSGIVVVLYAGLIALTYNQFATTPTGYVPGQDK 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                   +  +         I   +    ++  V                      +  
Sbjct: 578 QYLVAFAQLPNAASLDRTEEVIREMSRIAMEHPGVSDAVAFPGLNINGFTNSPSSGILFT 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
            +     + +  +        + +    +  + +A+ 
Sbjct: 638 PLKPFDERQSPELSAGAIAAKLNQQFASIKGAYVAIF 674



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 58/142 (40%), Gaps = 7/142 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    ++G + N+     ++ L+G +  + +++ +  ++  
Sbjct: 902  SLRLPLAIILIVPMTLLSALIGVQIYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L  + +     I ++    L   + TS+A  + VLPM +    G  +  +  + +  G+
Sbjct: 960  -LQDSGMDALSAIKEASRLRLRPILMTSIAFIMGVLPMVISTGAGAEMRQAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
            +      + I  P+  ++   +
Sbjct: 1019 IGVTFFGL-ILTPVFYYLLKRK 1039



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 364 WRASIIPLVAVPISLVGTFAFMQLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIA 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP--MAVWG--GSVIGSFAIPMAFGI 805
                 S  D   +++ E  G  + T++    +V      + G  G     FA+ +    
Sbjct: 424 E---GKSPFDATVQAMKEVTGPIIATTL-VLAAVFIPTAFMSGLTGQFYKQFALTITIST 479

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 480 VISAINSL 487


>gi|325963416|ref|YP_004241322.1| protein-export membrane protein SecD [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469503|gb|ADX73188.1| protein-export membrane protein SecD [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 585

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 107/526 (20%), Positives = 185/526 (35%), Gaps = 31/526 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+++  +    L   L            P         L LDL GG+ ++L   
Sbjct: 7   KKPGLRVLVWLGVILAALTAVLAGGTLAGQASWAP--------KLALDLEGGTQMILAPK 58

Query: 62  ED---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            +   D     L      +R  +   G+    +     +  +            D +   
Sbjct: 59  VEGGSDINEEQLNQAVAIIRQRVDGSGVAEAEISTQSGRNVVVSLPGTPSSQTRDLIQAS 118

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                  + +      +          +          S     + EI RQ         
Sbjct: 119 ADMNFRPVLLTAAGAPVPEDQRAPEDQLPKPTAEPANSSDTNWITPEIYRQ--------- 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                     +  + P + +  R                 P          V+       
Sbjct: 170 -------FEALDCENPAQDEQERSDPAKPLVTCEPATDTNPAIKYILGPVEVKGSNIVTS 222

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           +  L +                 D  T K                    ++     A+VL
Sbjct: 223 SFQLQQGAQGAVTNDWAVNIQFDDEGTAKFKEVTERLNQFYVAAGGDAGNDPKAQFAIVL 282

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D +V++AP     I  G+ QI+G FT ++A  L+  LR G+LPI   I  E+ + A LG 
Sbjct: 283 DDQVISAPRSLAVITDGRPQITGGFTEQSAKALSDQLRFGALPISFEIQSEQQISATLGG 342

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT----L 414
           + +  G  A V GL+L+V++ +  Y   G V   S+ +  +LT   +++LG T      L
Sbjct: 343 EQLRMGLLAGVIGLLLVVVYSLFQYRALGFVTIASLVVAGVLTYLAIAILGWTENYRLSL 402

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
             +AGI++ IG   DS I+  ERIR+E R+ + +  +++ G+ RA  T+  S    L+A 
Sbjct: 403 AGVAGIIVAIGQTADSFIVYFERIRDELREGRGLVSAVENGWKRAKRTVLASKAVNLLAA 462

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +VL+F   G VRGFA T+GL+ +  +          +  + R +  
Sbjct: 463 LVLYFVAVGNVRGFAFTLGLTAIADLIVVFMFTHPTLQLLARTRFF 508



 Score = 99.4 bits (245), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 69/185 (37%), Gaps = 10/185 (5%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              IQ+ + +   +  E +R G++  +I  + +++Y   +++       I +L++    T
Sbjct: 327 SFEIQSEQQISATLGGEQLRMGLLAGVIGLLLVVVYSLFQYR-ALGFVTIASLVVAGVLT 385

Query: 708 LGFFALFGIE----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               A+ G       +L  VA ++  IG + +  +V ++R+R  ++           ++ 
Sbjct: 386 YLAIAILGWTENYRLSLAGVAGIIVAIGQTADSFIVYFERIRDELRE---GRGLVSAVEN 442

Query: 764 SINETLGRSVYTS-MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                  R+V  S     ++ L +       +  FA  +    +           P L  
Sbjct: 443 GWKRA-KRTVLASKAVNLLAALVLYFVAVGNVRGFAFTLGLTAIADLIVVFMFTHPTLQL 501

Query: 823 IYDWR 827
           +   R
Sbjct: 502 LARTR 506


>gi|227539621|ref|ZP_03969670.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227240534|gb|EEI90549.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 1521

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 74/559 (13%), Positives = 168/559 (30%), Gaps = 32/559 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++   I      +     L    + +FP  +P + +                 
Sbjct: 7   KRPILSLVISVFIT-----LLGLLSLFTLPVTQFPDIVPPSVV---------VTANYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQ 120
             +     + +  ++  + +              N  I + F      +  A  V   + 
Sbjct: 53  NAEVSTNAVAIPLEKAINGVAGMTSMSTVSTNNGNTLIQIFFKVGTDPDIAAVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  K  + T  E    ++      +   +             + ++   E  
Sbjct: 113 TVLDELPEEVIKAGVTTEKEVNSMLMYLNIFSEDKNADERFIYNFTDINILKELKRIEGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P RL     +T ++       N        G+   +  +  Q
Sbjct: 173 GFAQIMGMRDYAMRIWLKPDRLAAYNISTDEVIQSLRSQNIEAAPGQTGIGSDKVVNMQQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y++              T  F   +    + I  +  G+    +         L   +  
Sbjct: 233 YVL------------RYTGKFTEASEYENIPIRANADGSVLRIKDIATLEFGSLDYEMVS 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +    P  +  +       + +        +A +  +   P     +          S S
Sbjct: 281 KTDGRPSASIMMKQLPGSNAQDVINNVKKRMAELKESSFPPGMTYTMGYDVSRFLDASIS 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+F+ +   +  L+   ++ + +I  L  + +LG ++ L ++  +
Sbjct: 341 SVITTLIEAFLLVFLVVFIFLQDFRSTLIPALAVPVCLIGALFFMQMLGFSINLLTLFAL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQS-----VFCSLDMGFSRAYSTIFDSNITALIATV 475
           VL IG+ VD+ I+V E +  +   +++        +       A   I        I   
Sbjct: 401 VLAIGIVVDNAIVVVEAVYAKMEDDETLTPREATFAAMKEVGSAIIAITLVMSAVFIPVA 460

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            L    G   R F++T+  +I+IS   A+++  A+   +++    K    N L+RFF   
Sbjct: 461 FLSGPVGIFYRQFSLTLASAIVISGINALTLTPALCALMLKSPHGKEKKNNLLNRFFNGF 520

Query: 536 DCIAIQFMRARFWGVGISI 554
           +             V    
Sbjct: 521 NKWYNNTSGKYAVIVRTIA 539



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 93/266 (34%), Gaps = 13/266 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + + AN    +  ++                  +      +  +         V+  
Sbjct: 247 YENIPIRANADGSVLRIKDIATLEFGSLDYEMVSKTDGRPSASIMMKQLPGSNAQDVINN 306

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII----SAIAMLIYIWIRF-KWYF 692
           VKK++ E+   S                +   I  VI     + + + + ++I    +  
Sbjct: 307 VKKRMAELKESSFPPGMTYTMGYDVSRFLDASISSVITTLIEAFLLVFLVVFIFLQDFRS 366

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +   L F  + G   NL  + A++  IG  V++ +VV + +   M+   
Sbjct: 367 TLIPALAVPVCLIGALFFMQMLGFSINLLTLFALVLAIGIVVDNAIVVVEAVYAKMEDDE 426

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
           T ++ R+    ++ E     +  ++      +P+A   G V      F++ +A  IV++ 
Sbjct: 427 T-LTPREATFAAMKEVGSAIIAITLVMSAVFIPVAFLSGPVGIFYRQFSLTLASAIVISG 485

Query: 810 SSSIFIAAPILLFI----YDWRAKNA 831
            +++ +   +   +    +    KN 
Sbjct: 486 INALTLTPALCALMLKSPHGKEKKNN 511



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 75/225 (33%), Gaps = 10/225 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV- 673
              + +          A       V   I  +               +++E    G   V 
Sbjct: 818  TRYNMFASAMLNGDPADGYSSGQVISAIERVAKEKLPAGYTFEWSGMTKEQKASGNQAVY 877

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I     + +Y+ +      +   L  + +L   I     F  +FG+E N+ A  A++ LI
Sbjct: 878  IFGICLLFVYLLLCAQYESFLLPLPVLFSLPAGIFGAFLFLKVFGLENNIYAQVALVMLI 937

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G    + +++   +   +  +   +S  +   ++    L   + TS A    ++P+    
Sbjct: 938  GLLGKNAILI---IEYAVIKHKQGLSVIEAAIEAAVMRLRPILMTSFAFAAGLVPLAMAS 994

Query: 790  GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G   +   S  +    G+++     + I   + +       K+ +
Sbjct: 995  GAGALGNRSIGLAALGGMLIGTIFGVLIIPGLYVLFNTDGKKDRK 1039


>gi|299133898|ref|ZP_07027092.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Afipia
           sp. 1NLS2]
 gi|298591734|gb|EFI51935.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Afipia
           sp. 1NLS2]
          Length = 1053

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 82/663 (12%), Positives = 172/663 (25%), Gaps = 49/663 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC IG +       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVALFICLIGAISI-----PLLAVAQYPIIAPP-------------SISISTSY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   L            S    Q +I  +F         +  V  
Sbjct: 50  PGASPEELYNSVTRPIEEELNGASGILNFESTSDSLGQVEIIANFQPGTDTTTASVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V ++L     +  ++        + +            +     ++R  + +I   
Sbjct: 110 RIKRVEARLPPAVIQQGILVEEASSAVLQIITLRSTDGSLDEVGLGDFMVRNIVGEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +L     TT  ++      N        G        
Sbjct: 170 PGVGRATLY-STEQSLRIWVDPEKLIGFNLTTEDVTKAITAQNAQVASGSLGAEPSVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  K ++S                +    +                 I       
Sbjct: 229 KVSALVLVKGQLS-------------TPDEFGSIVLHANADGSVVRLRDVARIEIGGMGY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 QFTTRLNGKPTAGLSVMLAPSGNALATAAAVKSKMEELSKFFPANVAYDIPYDITPVVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV  V+F+ +   ++ L+    + + ++   A L L G ++ + ++
Sbjct: 336 AIEKVLHTLVEAVVLVFFVMFLFLQNIRYTLIPTIVVPVALLGACATLLLAGYSINMLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +V+ IG+ VD  I+V E +      +      +     ++    I    +  +   V 
Sbjct: 396 FAMVMAIGILVDDAIVVVENVERIMTEEGLPPKEATRKAMTQITGAIVGITLVLMAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------KKMKSIDI 525
           + FF G      R F+ITM  +I  S   A+++  A+   +++         KK      
Sbjct: 456 MAFFPGSVGIIYRQFSITMVAAIGFSALMALTLTPALCATLLKPAKGGHGAAKKGIFRWF 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           N             + +  AR   V +  L  +  +   FT      +       + V  
Sbjct: 516 NNTLDASRGHYVKTVSWSLARKGRVMLVYLVLVGGVAFAFTRMPGGFLPVDDQGFITVDV 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             P D S  R+     ++          +    +      G  +   +    +K      
Sbjct: 576 QTPSDSSFARTKAAVERVEKYLETRSGIQDVTFLTGFSFLGQGINTAQAFITLKDWSERG 635

Query: 646 VPL 648
              
Sbjct: 636 AGD 638



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 91/241 (37%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V            + +        L  +    G+++A    ++   +++++  P 
Sbjct: 260 VRLRDVARIEIGGMGYQFTTRLNGKPTAGLSVMLAPSGNALATAAAVKSKMEELSKFFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +   +       + +  I K +  ++ + + +   +++  +   + L     + + +   
Sbjct: 320 NVAYDIPYDITPVVKAAIEKVLHTLVEAVVLVFFVMFLFLQNIRYTLIPTIVVPVALLGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N+  + A++  IG  V+D +VV + +     +    +  ++   K++ +
Sbjct: 380 CATLLLAGYSINMLTLFAMVMAIGILVDDAIVVVENV--ERIMTEEGLPPKEATRKAMTQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA + GSV      F+I M   I  +A  ++ +   +   + 
Sbjct: 438 ITGAIVGITLVLMAVFVPMAFFPGSVGIIYRQFSITMVAAIGFSALMALTLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 72/191 (37%), Gaps = 13/191 (6%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G  +  +L   +  + + +S + + + +   ++ W   
Sbjct: 834  DAIAEMERLAGLLPRGFGYEWSGQSLQEKLSGSQAPLLLALSILVVFLCLAALYESWTIP 893

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            +  + T+ L +  ++   ++ G+   +     ++T+IG +  D +++ +  +    L   
Sbjct: 894  VAVLLTIPLGVFGSVLASSMRGLPNGVYFTVGLITIIGLAAKDAILIIEFAKD---LREQ 950

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVIGSFAIPMAFGIVVAASSS 812
              S      ++ +      + T  A    VLPM V  G   +   A+    G++      
Sbjct: 951  GKSLLAATMEACSLRFRPILMTGFAFVCGVLPMVVAQGAGSLSQQALGT--GVMGGM--- 1005

Query: 813  IFIAAPILLFI 823
              IA  IL  +
Sbjct: 1006 --IAVAILALL 1014


>gi|77458748|ref|YP_348254.1| acriflavin resistance protein [Pseudomonas fluorescens Pf0-1]
 gi|77382751|gb|ABA74264.1| multidrug efflux system transmembrane protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 1035

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/589 (10%), Positives = 161/589 (27%), Gaps = 44/589 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L   I  +G +           +   P       +             L   
Sbjct: 9   KRPVATMLLSLAIMLLGGVS-----FGLLPVSPLPQMDFPVIV---------VQASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +           Q   ++ L F   R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSFGAIAGVNTMSSRSSQGSTRVILQFDLDRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +   +   
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSLTSDVLEKGQLYDLASTILSQSLSQVQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q       +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPQALNQYGVALDDVRKTIAEANVRRPKGSVEDDQRLWQIQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +     G           +   +    +  
Sbjct: 234 QLEKAKD--------------------YESLIIHYNGGAALRLKDVAKVSDGVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         L+A         +          +   
Sbjct: 274 FFNDDAAVLLVINRQAGANIIETVNEIKAQLPALQAVLPASVKLNLAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVALVILVVFLFLGNFRASLIPTLAVPVSLVGTFAVMYLYGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIDEGVKPMKAAYLGAKEVGFTLLSMNVSLVAVFLSILFMG 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINPLSRFF 532
           G      R F+IT+  +I++S+  ++++   +    ++  K       +           
Sbjct: 454 GIIESLFREFSITLAAAIVVSLLVSLTLTPMLCARWLKPHKPGEENRLQRWSRRTNDWMV 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                     +R R   +   I+    ++ L       +      G  +
Sbjct: 514 GKYATSLDWVLRHRRLTLLSLIITVGVNVALYVVVPKTFMPQQDTGQLI 562



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 86/237 (36%), Gaps = 7/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V    + ++    S    D     LV  +    + +     ++     +  ++P S   
Sbjct: 258 DVAKVSDGVEDRYNSGFFNDDAAVLLVINRQAGANIIETVNEIKAQLPALQAVLPASVKL 317

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N  +    + +  + +  + ++I+   +++ +++    +  +L     + + +  T    
Sbjct: 318 NLAMDRSPVIKATLHEAEMTLLIAVALVILVVFLFLGNFRASLIPTLAVPVSLVGTFAVM 377

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L+G   N  ++ A++   G  V+D +VV + +    +     +           E    
Sbjct: 378 YLYGFSLNNLSLMALILATGLVVDDAIVVLENI---SRHIDEGVKPMKAAYLGAKEVGFT 434

Query: 772 SVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  +++     L +   GG   S+   F+I +A  IVV+   S+ +   +      
Sbjct: 435 LLSMNVSLVAVFLSILFMGGIIESLFREFSITLAAAIVVSLLVSLTLTPMLCARWLK 491



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 93/263 (35%), Gaps = 11/263 (4%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE- 636
               + +   + +     R  L +    + S ++           +    D      V + 
Sbjct: 762  QDPVTLKQVQVITADGARIPLSTFAHYENSLEDDRVSHEGQFASESISFDMAEGVTVEQG 821

Query: 637  --MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
               +++ I  +     +               +     ++ + +A+ + + + ++ Y   
Sbjct: 822  SAAIERAIARLGLPEDVIVKMAGTADAFAATQKSQPFMILGALLAVYLVLGVLYESYIHP 881

Query: 695  GAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              I + +    +   L  + L G EF+L ++  +  LIG    + +++ D          
Sbjct: 882  LTILSTLPSAGVGALLSIYVL-GGEFSLISLLGLFLLIGVVKKNAILMID--LALQLERH 938

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              ++  + I  +  + L   + T++AA +  LP+ +    G  +     + +  G++ + 
Sbjct: 939  QGMAPLESIRSACLQRLRPILMTTLAAILGALPLLLGRAEGAEMRQPLGLTIIGGLIFSQ 998

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
              +++    + L++   R +  +
Sbjct: 999  VLTLYTTPVVYLYLDKLRHRFNK 1021


>gi|298293381|ref|YP_003695320.1| acriflavin resistance protein [Starkeya novella DSM 506]
 gi|296929892|gb|ADH90701.1| acriflavin resistance protein [Starkeya novella DSM 506]
          Length = 1066

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/603 (13%), Positives = 182/603 (30%), Gaps = 37/603 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ ++  IGL         +  + R P+                  +     
Sbjct: 11  RKPVPSIVLFVVLTAIGLYT-----FDRLPITRMPNIDLPIV---------SVTITQPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + ++       ++ +  +   + F      +   + V   +  
Sbjct: 57  APSELETQVTKIVETSVAGVQGVKHITSTITEGTSLTVVEFQLETQVDRAVNDVRDAVTS 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D ++ L+     + ++IV    +   +     E S  +    I  +       
Sbjct: 117 VRSELPQDIEEPLIQRVDVEGMAIVTYAASAPGMTPE--ELSWFVDDTVIRSLQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP +L  L  T A ++   V  N    G    +     S     
Sbjct: 175 QVKREGGVDREIRISLDPDKLAALGVTAADVNRQLVATNVDLAGGRGEIGTQEQSVRTLG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +++   +                     +  AR        ++    A      
Sbjct: 235 GALTVADLAETRIALPAG---------------SDGSARYVRLADLGSVTDGAAEPRIFA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           S     E A      L A         + +  V         
Sbjct: 280 RLDGKPVVAFGVYRAKGYSDVVVAENAEAELRKLEAAHP-DVKITLIDSTVKYTKADYES 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+ + +   +  +V   +I L+++ T  ++ LLG +L   S+  + 
Sbjct: 339 AMHTLIEGAVLAVIVVMLFLRDWRATIVTALAIPLSILPTFWVMDLLGFSLNGVSLLAVT 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +  + +T +   + + F G
Sbjct: 399 LVTGILVDDAIVEIENIVRHMRMGKSPYRAAIEAADEIGLAVVATTLTIVAVFLPVSFMG 458

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F IT+ +++L S+  A  +   +  + +R    + +    L RF++     
Sbjct: 459 GIAGQYFRQFGITVAVAVLFSLLVARLLTPMLSAYFLRDHGHREVKDGALMRFYVRLLHA 518

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           +I+        +   +LF                        L +       L   +  +
Sbjct: 519 SIRH--RFITVMAGILLFIGSMWLSTLLPSGFIPNSDVSRSVLALELPPGATLESTQRVV 576

Query: 599 ESL 601
           + +
Sbjct: 577 DEI 579



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 83/252 (32%), Gaps = 7/252 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           + R V L+ + S  +      I  +            + +    V      E   +K+  
Sbjct: 256 SARYVRLADLGSVTDGAAEPRIFARLDGKPVVAFGVYRAKGYSDVVVAENAEAELRKLEA 315

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             P   I   +        +        +  + +A+++ +     W   +     + L I
Sbjct: 316 AHPDVKITLIDSTVKYTKADYESAMHTLIEGAVLAVIVVMLFLRDWRATIVTALAIPLSI 375

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T     L G   N  ++ AV  + G  V+D +V  + +   ++      S      ++
Sbjct: 376 LPTFWVMDLLGFSLNGVSLLAVTLVTGILVDDAIVEIENI---VRHMRMGKSPYRAAIEA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI-L 820
            +E     V T++      LP++  G   G     F I +A  ++ +   +  +   +  
Sbjct: 433 ADEIGLAVVATTLTIVAVFLPVSFMGGIAGQYFRQFGITVAVAVLFSLLVARLLTPMLSA 492

Query: 821 LFIYDWRAKNAR 832
            F+ D   +  +
Sbjct: 493 YFLRDHGHREVK 504



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 79/249 (31%), Gaps = 7/249 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +        SV  S +  +  G         ++   + L+     +      L  V  +
Sbjct: 772  TLKVRTASGASVPLSAVADISFGTGPSSLDRYDRARRIALEADLAGNTQLGEALAEVYAQ 831

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
                     +   E    +I  E+       ++   + +L  + + F      +  +  L
Sbjct: 832  PVAKNLPRGVVLKETGDAEIMSEVFGGFADAMLAGVMMVLAVLVLLFANVLQPITILIAL 891

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L +        +      L  V   L L+G    + +++ D   + +       +    
Sbjct: 892  PLSVGGAFIALLITNNAMTLPVVIGFLMLMGIVTKNAILLVDFAIEAVHGGVARTT---A 948

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            + ++  +     V T++A    ++P A+    GG      AI +  G++ +   S+    
Sbjct: 949  LIEAGRKRAQPIVMTTIAMTAGMVPSAMGLGEGGDFRSPMAIAVIGGLIASTVLSLVFVP 1008

Query: 818  PILLFIYDW 826
             +   + D+
Sbjct: 1009 AVFTLMDDF 1017


>gi|238784614|ref|ZP_04628620.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           bercovieri ATCC 43970]
 gi|238714483|gb|EEQ06489.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           bercovieri ATCC 43970]
          Length = 1041

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/684 (9%), Positives = 185/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITIVGWVS-----LHVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +       L + +           +     + +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAIASPLEAQVNGVSNMLYMESTSANNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       +    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPKQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P R+  L  +   +       N        G       
Sbjct: 169 INGVGDVQVFGARDYSMRVWLNPQRMESLNVSVQDIVAALQQQNVQAAAGQIGSSPSMPG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  ++                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLT-------------DPQQFANVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A         +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLSASFPEDLTYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL V+++ +   +   +   +I ++++ T A+L + G +    S
Sbjct: 336 ATLHEIALSLTLTLIVVLAVVYLFLQSMRATFIVALTIPVSLLGTFAVLYVFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +     N  N +   +     S+    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLSNDPNLTPAQATKQAMSQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V +    G      R FA+T+  ++++S   A+++  A+   +++ + + +  +      
Sbjct: 456 VPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPALCALLLKRRTLSTTGVFGGINR 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L         +  R     +  + ++  + L    G           +        + L
Sbjct: 516 GLDRARDGYVSLTGRISSRALFSIAALLLVGLATWWGYTRLPTSFLPEEDQGYFFVSLQL 575

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK--KITEIVPLS 649
               S   +  + D  +Q           ++      ++             +       
Sbjct: 576 PDGASLNRTQAVMDQMYQQVTANDAVEDVIKITGFSLLSGNNAPNAGFAIVMLKPWGQRP 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            I             +    I+ V
Sbjct: 636 HIDQVLAAIQANLAAIPSAMIMAV 659



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 83/279 (29%), Gaps = 13/279 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              ++                     + +      +    +L +L     S          
Sbjct: 753  DFTLNNRMFRVQLQNDMDFRQRTAQINSLNVRSDNGALVSLANLVTLTPSVGAPFISNFN 812

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                    G +       + +      +        +        +E    G V +I  A
Sbjct: 813  QFPSVAVSGSAAEGASSGQAMAAMEALLAQNLPQGYSYSWSGMSWQEQQTGGQVMLIYLA 872

Query: 678  IAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              +  Y+++      W   L  I +++  +   +   +  G   ++ A   ++ LIG + 
Sbjct: 873  ALVFAYLFLVAQYESWSIPLVVILSVVFAVGGAVAGLSAMGFANDVYAQIGLVLLIGLAA 932

Query: 735  NDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
             + +++  + + R+         S  +       +     + T+++  + V+P+    G 
Sbjct: 933  KNAILIVEFSKARRE-----EGASIAEAAQDGAKQRFRAVMMTAISFILGVMPLVFASGA 987

Query: 792  SVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              +      I +  G+++A +  I     + L I   R 
Sbjct: 988  GAMSRQIIGITVFGGMLMATAVGILFIPALYLHIQRLRE 1026



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P                  + +  + + ++ I +L  +++             T+ +
Sbjct: 316 ASFPEDLTYEINYDSTLPVTATLHEIALSLTLTLIVVLAVVYLFLQSMRATFIVALTIPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +     +++      
Sbjct: 376 SLLGTFAVLYVFGYSANTLSLFAIILALTIVVDDAIVVVENV-ERLLSNDPNLTPAQATK 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++++  G  + T++      +P+A+     G +   FA+ ++  +++++ +++ ++  +
Sbjct: 435 QAMSQIAGPIIATTLVLMAVFVPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPAL 494

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 495 CALLLKRR 502


>gi|323495463|ref|ZP_08100540.1| ACR_tran, AcrB/AcrD/AcrF membrane proteins family [Vibrio
           brasiliensis LMG 20546]
 gi|323310386|gb|EGA63573.1| ACR_tran, AcrB/AcrD/AcrF membrane proteins family [Vibrio
           brasiliensis LMG 20546]
          Length = 1040

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/651 (9%), Positives = 179/651 (27%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+L  ++C  G++        +  +   P                      E  
Sbjct: 9   KRPVAAVVLSLLLCVFGIVS-----FNKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSMSRITITFDLGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +  + R  +D+  +     
Sbjct: 115 AQRSLPDEADDPVVFKNNGSGEASLYINLSSSE--MDRTQLTDYVERVLMDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P+++     TT+ ++      N    G                
Sbjct: 173 SVDISGGLYKVMYVKLKPAQMAGRGVTTSDITSALRSENIESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V    I ++  TA    +       +          +     ++           
Sbjct: 219 -----VRNDQIVMSVRTARSYNQAEDFEYLVVKRASDNTPIYLKDVADVYIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S + 
Sbjct: 274 KSDGVVNVSMGIVPQSDANPLEVADLVHKEVENIQKFLPQGTRLAIDYDSTVFIERSIAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIENGEKPLLAAYKGTREVGFAVVATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI--NPLSRFFLIPD 536
           G        F++ + +S++ S   A+++   +   +++     +            L   
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSKLLKANVKPNRFNLLIDDMFGRLESA 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     ++      I+ S           +   +       +     R  D +    
Sbjct: 514 YRKVLKGALKWKWAAPLIIISCIGGSWGLMQQVPAQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MAANMDIVEDRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 90/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDQIVMSVRTARSYNQAEDFEYLVVKRASDNTPIYLKDVADVYIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V ++V K++  I           +    +  + R        +
Sbjct: 279 VNVSMGIVPQSDANPLEVADLVHKEVENIQKFLPQGTRLAIDYDSTVFIERSIAEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIENGEKPLLAAYKGTREVGFAVVATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSKLLKANVKPNR 498



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 6/138 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        L G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLFLMGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    I F   I  +    L   + T+       +P+ +    G     +    + FG+
Sbjct: 931  QLRDRGIEFEKAIVDASARRLRPIMMTAFTTLAGAVPLILSTGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFI 823
              A   ++F+   +   I
Sbjct: 991  GFATLVTLFVIPAMYRLI 1008


>gi|37519803|ref|NP_923180.1| AcrB/AcrD/AcrF family protein [Gloeobacter violaceus PCC 7421]
 gi|35210794|dbj|BAC88175.1| AcrB/AcrD/AcrF family protein [Gloeobacter violaceus PCC 7421]
          Length = 1031

 Score =  169 bits (427), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/672 (11%), Positives = 177/672 (26%), Gaps = 43/672 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ ++   GL       +        P+               G  +     
Sbjct: 11  RNPVPTIVLFLILTLGGLASFGGLGIDLDPNTDLPTV--------------GVTVTQLGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        ++R   +   + F      +   +     +  
Sbjct: 57  APTELETQVTRRVEQAVSSIGNIRHIYSTVRDGSSFTRVEFNLGTNLDRATNDTRDAITK 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L     + ++    +           I       +E S     +   ++       
Sbjct: 117 IRAQLPQGIDEPVIQRFDDGGWP--FIGYTISSDRRAPVELSWLAENRIARELLTVPGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L       ++  + +P RL+ L  T  ++       N    G    V     +     
Sbjct: 175 QVLYFGS-KREIRIDLNPVRLKALGITADQVHAQIRALNIDLPGGRGEVGTTEQAIRTLG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +  + +               V                        A      
Sbjct: 234 SAATVENLRSVRIALPDGRHANLESLGTVT--------------------DGTADQRWLA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +           +  +     E        ++          +          S   
Sbjct: 274 YYDSRPAVVFQVVRASGTNLVGVEEAVQAKVKEIQQSLPDDIKLQLLWTTGDFVRESYDA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + AGL ++V+++ +   +  L+A  +I L+VI T A++ + G TL   ++  + 
Sbjct: 334 SVEAVLLGAGLAVVVIWLFLRDWRATLIAGLAIPLSVIPTFAVMRMAGFTLNNMTMLALA 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I       +S + +           +  + +T +   + + F  
Sbjct: 394 LVIGILVDDAIVELENISRHIGMGKSPYQAAVEAADEIGLAVVATTMTIVAVFLPVAFME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F  T+  ++L S+  A  +   M  ++++     +          L    +
Sbjct: 454 GIQGQYFRQFGWTVAAAVLFSLVVARMLTPLMAAYLLK---PHTHAPGRSLLTRLYEGVL 510

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                  R   +     F+     +        G   +G   L V       +   R  +
Sbjct: 511 GWSLAHRRIALLLAGAFFAGSLALIPLLPTSFIGPIDRGQSSLEVELPPGSSIETTRKAM 570

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
             L          +        +      +  +  +    + K  +       +   I+ 
Sbjct: 571 LQLGSLVQGHPAVEHVYARAGSIDSSSTPNTGRLVITLKPRDKRRQTQQQFEAEMRPILN 630

Query: 659 PKISRELIRKGI 670
                 L   G 
Sbjct: 631 QVPGVRLSFSGW 642



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 83/250 (33%), Gaps = 7/250 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           ++ +   R  +L  + +  +                     ++    + V     ++   
Sbjct: 245 RIALPDGRHANLESLGTVTDGTADQRWLAYYDSRPAVVFQVVRASGTNLVGVEEAVQAKV 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
           K+I + +P               RE     +  V++ A   ++ IW+  + W   L A  
Sbjct: 305 KEIQQSLPDDIKLQLLWTTGDFVRESYDASVEAVLLGAGLAVVVIWLFLRDWRATLIAGL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L +  T     + G   N   + A+  +IG  V+D +V  + +    +      S  
Sbjct: 365 AIPLSVIPTFAVMRMAGFTLNNMTMLALALVIGILVDDAIVELENI---SRHIGMGKSPY 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
               ++ +E     V T+M      LP+A      G     F   +A  ++ +   +  +
Sbjct: 422 QAAVEAADEIGLAVVATTMTIVAVFLPVAFMEGIQGQYFRQFGWTVAAAVLFSLVVARML 481

Query: 816 AAPILLFIYD 825
              +  ++  
Sbjct: 482 TPLMAAYLLK 491



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 54/142 (38%), Gaps = 7/142 (4%)

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +  + + +   + + F  +   L  + +L L +   L    +F     L  +  ++ L+
Sbjct: 844 AIAAAILLIYAVLALLFGGFLHPLTIMMSLPLSLGGALVGLLVFQKSLGLYTLIGIVMLM 903

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
           G    + +++ +     +          + I ++    +   + T++A    +LP+A+  
Sbjct: 904 GLVCKNAILLVE---YCLVAMQAGRPRTEAILQAGEARMRPILMTTVAMIAGMLPIALGI 960

Query: 789 -WGGSVIGSFAIPMAFGIVVAA 809
             G       A+ +  G++ + 
Sbjct: 961 GAGSEARSPMAVAVVGGLLTST 982


>gi|304436757|ref|ZP_07396725.1| RND superfamily drug:proton (H+) antiporter [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370237|gb|EFM23894.1| RND superfamily drug:proton (H+) antiporter [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 1063

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/656 (11%), Positives = 167/656 (25%), Gaps = 31/656 (4%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
              + ++P   P                         VN  +    +E  +  +      
Sbjct: 29  SLPIAQYPQISPPTV---------SVSASYTGASAAVVNETVAQVIEEQINGTQGMDYMS 79

Query: 89  FSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
            +        ++++F      +  A KV     G N+ L    +   + T          
Sbjct: 80  STSDDTGRYSLSVTFDVGTDGDMDAVKVQNNAAGANASLPSAVQSAGVTTRKSSGQMAYF 139

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
                +                 +D I                  +    +P RL +L  
Sbjct: 140 VSLYSEDGRYDRAFMKNYATLYFLDAIKRISGVGDVQVFGA-DYAMRVWLNPDRLAELGL 198

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           T A ++      N        G   + +    Q+  + +  ++                +
Sbjct: 199 TVADVTAAIKEQNVQAPAGTVGGMPVENGQEKQFTGKVQGRLT-------------TPEE 245

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
               I                 I                          +  +   T+  
Sbjct: 246 FGNVIIASGKDGSFVRLKDVARIETGQRQNNIVAKFNGYPAVGFGIQLTSDANAMITLAE 305

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
              + A       P         +      S      T      LV++V+F+ +   +  
Sbjct: 306 VRKVLAEAEKTFPPGLKMKSVFDSTDYINASIKEVVHTFVEALLLVVLVIFVFLQSWRAT 365

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           ++   ++ +++I T     LL  ++   ++  +VL IGL VD  I+V E +        S
Sbjct: 366 IIPLLAVPVSLIGTFGTFVLLDFSINTLTLFAMVLAIGLVVDDAIVVIENVEHHMESGLS 425

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAI 504
              + +   +     +           V + F GG      + FA+T+ +++ +S F A+
Sbjct: 426 PVDATERAMAEVQGPVVAIAFVLAAVFVPVAFLGGMMGVLYKQFALTIAIAMGLSAFVAL 485

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           ++  A+   +         + N               F R R   +GI   F   +   +
Sbjct: 486 TLTPALCALM----LKPKKESNSEGVLDRFFAWFNRVFDRTRKGYLGIVSRFIRKARTAV 541

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
               +  G+       L        D   +   ++       +      +K      +  
Sbjct: 542 VFLLIVCGLTAIIYRNLPSTFVPDEDQGYLMIAIQLPSGASTNQTQKVVDKIQQAAQKEI 601

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            G     +     +                +    +          VG +    AM
Sbjct: 602 KGQDAVMSINGFDILADGANSNGAVVFVGMKDWSQRPGLGESVAAAVGTMFRVGAM 657



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 7/147 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  +  + + +  T G F L     N   + A++  IG  V+D +VV + +    
Sbjct: 361 SWRATIIPLLAVPVSLIGTFGTFVLLDFSINTLTLFAMVLAIGLVVDDAIVVIENV---E 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGI 805
               + +S  D  ++++ E  G  V  +       +P+A  GG   V+   FA+ +A  +
Sbjct: 418 HHMESGLSPVDATERAMAEVQGPVVAIAFVLAAVFVPVAFLGGMMGVLYKQFALTIAIAM 477

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNA 831
            ++A  ++ +   +  L +   +  N+
Sbjct: 478 GLSAFVALTLTPALCALMLKPKKESNS 504



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 49/159 (30%), Gaps = 18/159 (11%)

Query: 685  WIRFKWYFALGAITTLILDIT-------KTLGFFALFGIEF-----NLTAVAAVLTLIGY 732
             +   W      + T+   I             F   GI       ++     V+ +IG 
Sbjct: 891  ALYESWSVPFAVLFTVPTGIFGALFAEYILAAIFGAIGIPAPGYQNSVYMQIGVIMVIGL 950

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +  + +++ +  +         +       ++    L   + TS A  I  LP+ +    
Sbjct: 951  AAKNAILIVEFAK---VRVDRGMDPLKAAIQAAGLRLRPILMTSFAFIIGCLPLCMASGA 1007

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            G +      + +  G++ A    +F+     + +     
Sbjct: 1008 GAAARNGMGVAVVGGMLCATVLGVFLIPVFYVIVDRISR 1046


>gi|317010234|gb|ADU80814.1| preprotein translocase subunit SecD [Helicobacter pylori India7]
          Length = 525

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFIGALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALL----- 105

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L +       +       S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 106 -----LELQGHSQFEINKEAGFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAVFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+ +L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASALLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 71/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAVFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+   +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASALLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|113868831|ref|YP_727320.1| cation/multidrug efflux pump [Ralstonia eutropha H16]
 gi|113527607|emb|CAJ93952.1| Cation/multidrug efflux pump [Ralstonia eutropha H16]
          Length = 1081

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/689 (10%), Positives = 175/689 (25%), Gaps = 40/689 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN     ++      +GL         +  +D+FP       +                 
Sbjct: 9   RNPVLATMMMMAFIVVGLFS-----YQRLPVDQFPDITFPVVV---------VQTEYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E+ + +           Q  + + + F  S      A  V   +  
Sbjct: 55  APESVESDVTRKVEEIVNTISGIDEIFSHSYQGTSVVVIKFDLSVDVGQAAQDVRDKIAL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNN-IDQVISHAIEQSMEIIRQRIDQIGISEST 180
           +  +   + K+  ++     +  I     +          E +    +    ++      
Sbjct: 115 IRPQFRDEVKEPRVLRYDPSDAPIFYLSVSNAPGATHSQRELTTIADQIVRKRLETVRGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      ++     P++L  L     ++       N                   +
Sbjct: 175 GAINIVGGTKREVEIRIRPAQLEALGIGVDQVMNAIRNENQELPAGELRSSATETVVQIK 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V                            I       +        ++          
Sbjct: 235 GRVPTP--------------------DAFRQIIVARRAGQPVTLGEIADVRDGQEEQESL 274

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L                +   T++    +    R          V          S  
Sbjct: 275 ALLDGKRALFLSVVKAQGQNTVDTVDGLVRMTEETRKLVPAGVQLNVVNDTARGIRSSVK 334

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T    A L + ++F+ +   +  ++   ++ + +I T  ++ + G TL + ++  +
Sbjct: 335 EVRSTLLEGAFLTVAIVFLFLGSWRSTVITGLTLPIALIGTFGVMYMCGFTLNVITLMAL 394

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL +D  I+V E I   N   +    +   G +     +  +  + +   + + F 
Sbjct: 395 SLCVGLLIDDAIVVRENIVRHNLMGKDHRSAALDGTNEIGLAVLATTFSIVAVFLPVGFM 454

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIP 535
           G   G     F IT+  ++LISMF + ++   +           +             + 
Sbjct: 455 GGIIGRFFHQFGITVVAAVLISMFVSFTLDPMLSSVWHDPDLHGTGNKKSWYGRTVGRLL 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           D  + +  +      G+        +       + +   F     +G       DL   +
Sbjct: 515 DWFSAKMDKLGNGYAGMLGWALKHRLATAIIAAVTFFGSFALVPLIGTEFVPNADLGETQ 574

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               +     I        +       +        T        +   +V +   +   
Sbjct: 575 VGFTTPVGTSIEVTEAKVRQVEAALKSFPEVAYTYATINSGNASGRNNALVSVRLTERRS 634

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYI 684
                     + +  +  I      L+ +
Sbjct: 635 RQLSTAQLNPLIRQRLAGIAGITLTLVGM 663



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 58/157 (36%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + I       W   +    TL + +  T G   + G   N+  + A+   +G 
Sbjct: 341 LEGAFLTVAIVFLFLGSWRSTVITGLTLPIALIGTFGVMYMCGFTLNVITLMALSLCVGL 400

Query: 733 SVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+ +        R       NE     + T+ +     LP+   GG
Sbjct: 401 LIDDAIVV----RENIVRHNLMGKDHRSAALDGTNEIGLAVLATTFSIVAVFLPVGFMGG 456

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      F I +   ++++   S  +   +    +D
Sbjct: 457 IIGRFFHQFGITVVAAVLISMFVSFTLDPMLSSVWHD 493



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/298 (10%), Positives = 85/298 (28%), Gaps = 15/298 (5%)

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
                         +                +   +    D S     L  +     +   
Sbjct: 750  SWRAPDDENYDVRVRLPRDARTGMADLSALMIASSQTNADGSPRMVPLRQIAELVPTTGA 809

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                +  L R      +   ++        K                G          G 
Sbjct: 810  NQISRRDLNREVELTANVAGRSAGEVARDVKAALDGMNWPAGYKYRFGGSTKSMNESFGY 869

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
                ++   + IY+ +      ++  +  +T+L L +        LF    N+ ++   +
Sbjct: 870  AVSALALAVIFIYMILASQFASFFQPIAIMTSLPLTLVGVFAALLLFRSTLNMFSIIGFI 929

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLY---------TTSISFRDLIDKSINETLGRSVYTSMA 778
             L+G    + +++ D   +  + +            +S    + ++    L   + T++A
Sbjct: 930  MLMGLVTKNAILLVDFANQARQGHVDQGGVGDGRQPLSREAALVEAARVRLRPILMTTLA 989

Query: 779  AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                ++P+A     G          +  GI+ ++  ++ +   I  ++ D+ A   R+
Sbjct: 990  MIFGMVPLAFSLGEGAEQRAPMGQTVIGGIITSSILTLVVVPVIYTYLDDFGAWLRRL 1047


>gi|91776145|ref|YP_545901.1| hydrophobe/amphiphile efflux-1 HAE1 [Methylobacillus flagellatus
           KT]
 gi|91710132|gb|ABE50060.1| Hydrophobe/amphiphile efflux-1 HAE1 [Methylobacillus flagellatus
           KT]
          Length = 1062

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 152/548 (27%), Gaps = 33/548 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSMLILLGGALAMF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAEAVASPLEESINGVEDMIYMQSQANSDGNLTITVNFKLGVDPDKAQQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  L T        ++                   +    D++   +   
Sbjct: 116 ALPRLPPDVQRLGLTTLKSSPTLTMVVHLASPDNRYDMTYLRNYAVINVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T + +       N      + G            
Sbjct: 176 EVGLFGSGNYAMRVWLDPQKVAQRGMTASDVVQAIREQNVQVAAGVIGASPNNVPLQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 I    +      
Sbjct: 236 NAQGRL---------------KTEEEFAAIILKTSADGAITRLSDVARIELAASEYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L A         +          S   
Sbjct: 281 LLDNKPAVAIPIFQAPGANALAISDAVRATMKELAADFPESVEYHIVYDPTQFVRSSIRA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T +L+   G ++   S+ G+V
Sbjct: 341 VVTTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIIGTFSLMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIESGLSPRDATYQAMREVSGPIIAIALTLIAVFVPLAFMT 460

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +      +L     
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAMLLKGHGDKKDWLTRFMDRWLGGFFA 520

Query: 539 AIQFMRAR 546
               M +R
Sbjct: 521 RFNRMFSR 528



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 900  SLTLPLAVILIVPMSILAALTGVWLTKGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S      ++    L   + TS+A  + V+P+      G  +  +  I + FG+
Sbjct: 958  -LELQGSSIVKAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRYAMGIAVFFGM 1016

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +      +F+     + +  
Sbjct: 1017 LGVTLFGLFLTPVFYVLLRK 1036



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 60/146 (41%), Gaps = 8/146 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 363 WRASIIPLLAVPVSIIGTFSLMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI- 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGI 805
              + +S RD   +++ E  G  +       I+V     +     G     FA+ +A   
Sbjct: 422 --ESGLSPRDATYQAMREVSGPII-AIALTLIAVFVPLAFMTGLTGQFYKQFAMTIAIST 478

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           V++A +S+ ++  +   +        
Sbjct: 479 VISAFNSLTLSPALSAMLLKGHGDKK 504


>gi|254241629|ref|ZP_04934951.1| hypothetical protein PA2G_02333 [Pseudomonas aeruginosa 2192]
 gi|126195007|gb|EAZ59070.1| hypothetical protein PA2G_02333 [Pseudomonas aeruginosa 2192]
          Length = 1055

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 69/575 (12%), Positives = 164/575 (28%), Gaps = 40/575 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +GL+       P   +  +P  +P               + +    
Sbjct: 10  RPIFAAVLSIIIFVVGLIAI-----PLLPVSEYPEVVPPT-------------VQVRATY 51

Query: 63  DDFV-NGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                       +  L + +   E +         + +   T++F      ++   KV  
Sbjct: 52  PGANPREIADTVAAPLEASITGVENMLYMKSVAGSDGVLVLTVTFRPGTDPDDAQVKVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    ++  +VT  +     ++ Q         A+      +    D++   
Sbjct: 112 RVAQAEPRLPEAVRQQGVVTVKQFPNETLVVQLRSPGDRYDALYLRNYAVLHVRDELARI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +       +      +    DP ++  L  T   +       N        G        
Sbjct: 172 QGVGDATINGSGDYAMRLWLDPDKIAALGMTAGDVVEAVREQNVQVSAGQLGAPPNPSGS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +    I       +         +    +  
Sbjct: 232 DFLLSINAQGRLVTEE-------------EFGDVIVKTGSQGQVTRLRDVARVEMDASSY 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L                +     +        L           VE  +      
Sbjct: 279 SLMSLLNNKPAVAISVFEAPGANAIEISDQVRAKMDELAKRFPEGVEWSVEYDSTVFVRQ 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV++V+ + +   +  ++   ++ ++V+ T A+L +LG ++   ++
Sbjct: 339 SIKAVVNTLLEAIGLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAVLLMLGFSINTLTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIAT 474
            G+VL IG+ VD  I+V E +     +  +   +           I   +    +  +  
Sbjct: 399 FGLVLAIGIVVDDAIVVVENVERNIAEGLAPLAAAHQAMREVSGPIVAISLVLCSVFVPM 458

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFL 533
             L    G   + FA+T+ +S +IS   ++++  A+    +  +     +    L R   
Sbjct: 459 AFLSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAARLLRPHGAAPDLPTRVLDRSLG 518

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                  +F      G G S+   +     +F   
Sbjct: 519 WIFRPFNRFFLRSADGYGNSVSRILGRRGAVFLVY 553



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   +    L G + N+     ++ LIG +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMSLLSAMTGVWLAGGDSNIFVQIGLIVLIGLASKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L     S  D   ++    L   + TS+A    V+P+ V    G  +     + +  G+
Sbjct: 958  -LERKGHSILDAALEASRLRLRPIIMTSIAFIAGVVPLMVGSGAGAEIRQVMGVTVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +     +  R
Sbjct: 1017 LGVTLFGLFLTPVFYVALRRLATRKPR 1043



 Score = 44.7 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 49/126 (38%), Gaps = 10/126 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     + G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSVVGTFAVLLMLGFSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                ++      +++ E  G  V  S+      +PMA   G        FA+     I 
Sbjct: 425 E---GLAPLAAAHQAMREVSGPIVAISLVLCSVFVPMAFLSGVTGQFYKQFAVT----IA 477

Query: 807 VAASSS 812
           ++   S
Sbjct: 478 ISTVIS 483


>gi|258515260|ref|YP_003191482.1| acriflavin resistance protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778965|gb|ACV62859.1| acriflavin resistance protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 1058

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/577 (10%), Positives = 162/577 (28%), Gaps = 48/577 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++      +GL         +   + FP+                 ++ + V 
Sbjct: 9   KRPAMMTMVIMFFVVLGLYT-----YGRIGTELFPAINTP-------------YVTVSVS 50

Query: 62  EDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++       +E  + L +           +  ++L F  +   +  A  V  
Sbjct: 51  YPGAGAEEIETQIIKPIEENLASLSQLKHINSMASVGRANVSLEFDLTADADEAAIDVQK 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  ++ +        +++     +  I+    +  +      + + +I+++R+ ++   
Sbjct: 111 KVDAISGRFPDGAGDPVVIKRDMNDQPIMTLSLSSKRPQYEIYDLANDIVKERLQRLT-- 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +   S     ++    D +RL     T  ++       N               + 
Sbjct: 169 -GVTEVAISGGQQREIQINIDKTRLEGYGLTLNQVISRLEEENLDDPSGRIDRPEAEYNL 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                     +I+ IH+                                   + +    V
Sbjct: 228 RVLGQFRSINDIAAIHI--------------------PTSSGYPVPLKDIATVTEGYQEV 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            ++  S     +T      +++         I+   +      
Sbjct: 268 RAFSRLNGTDAVSIQIYKQSDASVVAVGKTVKNELDVIKKELPTDSELIISNDSSDYVQR 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +              + LF+ +   +  L+   +I  ++I T+ ++   G T  + S+
Sbjct: 328 SLNGTWSNILEGIITTGLALFIFLRQWRSTLIVMLAIPTSLIATVMMMYFSGFTFNMMSL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL---DMGFSRAYSTIFDSNITALIAT 474
            G+ L IG+ VD +I+V E I    +  +S + +          A   I  S+I   +  
Sbjct: 388 MGLALCIGILVDDSIVVLENIHRHVQMGKSPYEAAIEGRREIGMAAIAITMSDIVVFMPI 447

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            ++    G   R F +T+  + L S+F + ++   +   + + K               +
Sbjct: 448 ALMNGMVGQFFRQFGMTVVFATLFSLFISFTLTPMLASRLYKQKLNPESGEGQEHSSPEV 507

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
                       +            +         N 
Sbjct: 508 LQKKRQSIFAFIWKHTIPLGRKVKQAYLKQLDWSFNN 544



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 89/252 (35%), Gaps = 9/252 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +   +  PV L  + +  E  Q      +    +   +   +      VA  + ++    
Sbjct: 244 IPTSSGYPVPLKDIATVTEGYQEVRAFSRLNGTDAVSIQIYKQSDASVVAVGKTVKNELD 303

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI--AMLIYIWIRFKWYFALGAIT 698
            I + +P  +            +  +      ++   I   + ++I++R +W   L  + 
Sbjct: 304 VIKKELPTDSELIISNDSSDYVQRSLNGTWSNILEGIITTGLALFIFLR-QWRSTLIVML 362

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            +   +  T+      G  FN+ ++  +   IG  V+D +VV + +    +      S  
Sbjct: 363 AIPTSLIATVMMMYFSGFTFNMMSLMGLALCIGILVDDSIVVLENIH---RHVQMGKSPY 419

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   +   E    ++  +M+  +  +P+A+     G     F + + F  + +   S  +
Sbjct: 420 EAAIEGRREIGMAAIAITMSDIVVFMPIALMNGMVGQFFRQFGMTVVFATLFSLFISFTL 479

Query: 816 AAPILLFIYDWR 827
              +   +Y  +
Sbjct: 480 TPMLASRLYKQK 491



 Score = 65.9 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 90/256 (35%), Gaps = 15/256 (5%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            N PV L  V          DI   +     N    ++ +      Q   +++ + K+   
Sbjct: 798  NTPVSLGQVADIDFGSGPRDIRRVDRQRAINVTCNVRDRVLSDFMQEVKVKLAEIKLQPG 857

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
              ++     + +            +  +++  + +++Y      +      + +L L I 
Sbjct: 858  FSITYSGQDQNMNDSFKELAAALLLSILLVYMVLVMLY----ESFTTPFIRMLSLPLGIM 913

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L   A+F    NL  +  V+ L G    +  ++ D       +     + R+ + ++ 
Sbjct: 914  GALVALAIFRYNLNLFTIIGVIMLDGLVAKNGTLLID---YTHTMMAQGKTLREALVEAA 970

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T++     +LP A+    G       A+ +  G++ +   ++F+   +   
Sbjct: 971  TTRLRPIIMTTITMVFGMLPTALSLTEGAENRSGMAVVLIGGLLSSTVFTLFVIPVVYTI 1030

Query: 823  IYDWR-----AKNARI 833
            I DW+      +  R+
Sbjct: 1031 IDDWKHNWHERRRNRL 1046


>gi|166711689|ref|ZP_02242896.1| multidrug efflux transporter [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 1056

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/613 (10%), Positives = 157/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PVFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +      +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKAVTQVIEQQLTGIDHLLYFNSSSAANGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D    +    +  +  + ++QI    
Sbjct: 111 VSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSINRDALNDIVGSRLLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G     +   
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPEGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPEQFENIILRTDNNGATVRLKDVARVTVGPSSYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     +  G     L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSDAVGAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVIHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYVIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A+S   A+            +    ++ D   
Sbjct: 457 SLQPGASGAIYKQFALTIAMSMGFSAFLALSFTPALCGAFLKSTHSTKKNWVYRTFDKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R+  W +    L  +C        G     + +G     V    
Sbjct: 517 DKLAHRYVGVVGHTLKRSPAWMIAFVALMVLCGFLFTRMPGSFLPDEDQGFAVAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
                        
Sbjct: 577 GATKIRTNEAFAQ 589



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 14/134 (10%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLMVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----------GGSV 793
             +         + R+   ++ +      + TS A  + VLP+A+            G  V
Sbjct: 949  VEQRAA---GKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANARHSIGTGV 1005

Query: 794  IGSFAIPMAFGIVV 807
            IG        G++ 
Sbjct: 1006 IGGMVFATVLGVIF 1019



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYVIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 477

Query: 805 IVVAASSSIFIAAPI 819
           +  +A  ++     +
Sbjct: 478 MGFSAFLALSFTPAL 492



 Score = 40.1 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 48/527 (9%), Positives = 136/527 (25%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+  W++   +++   G L        +      P              +G +  ++++ 
Sbjct: 533  RSPAWMIAFVALMVLCGFL------FTRMPGSFLPDED-----------QGFAVAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRSFLKK-------EGIGVFSMRQIQNKITLSF-------ADSRF 107
                          ++R+ L+K         I  FS       + + F            
Sbjct: 575  PPGATKIRTNEAFAQMRAILEKQPAVEGLLQIAGFSFLGSGENVGMGFIRLKPWKERDVT 634

Query: 108  KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
             E +  ++     G+            +    +     +  Q+         I     ++
Sbjct: 635  VEQLIQQLNGAFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALIHARNIVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +  ++             +   +QL    D  + + +    + +               
Sbjct: 695  GKAAEKQDTLVGVRPNGLENAPQLQLH--VDRVQAQSMGLNVSDIYSSIQ---------- 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                 L     N Y  E +++   +  +                 +       +   +  
Sbjct: 743  ---LMLAPVYVNDYFAEGRIKRVNMRADDQFRAGPESLRNFFTPSTTATGADGQPAMIPL 799

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
             N+ K         +      +     G     G+     + +   +          +  
Sbjct: 800  SNVVKAEWNYASPALNRYNGYSAVNIVGNPAPGGSSGQAMSAMEEIVNNDLPPGFGFDWS 859

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                     G+ +      ++V   + +            ++    I +   +T ++L  
Sbjct: 860  GMSYQEIIAGNAATLLLALSVVVVFLCLAALYESWSIPVAVLMVVPIGVLGAITFSMLRG 919

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            L     L    G++  IGLA  + IL+ E   E+    +++  +        +  I  ++
Sbjct: 920  LPN--DLYFKIGMITVIGLAAKNAILIVEFAVEQRAAGKTLREATLEAAHLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               ++  + L      G  A       +   ++ +    +  +    
Sbjct: 978  FAFILGVLPLAISTGAGANARHSIGTGVIGGMVFATVLGVIFIPLFF 1024


>gi|325293423|ref|YP_004279287.1| acriflavin resistance protein [Agrobacterium sp. H13-3]
 gi|325061276|gb|ADY64967.1| probable acriflavin resistance protein [Agrobacterium sp. H13-3]
          Length = 1049

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/626 (10%), Positives = 173/626 (27%), Gaps = 46/626 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L +++   GL   +   + +      PS                     E  
Sbjct: 21  RRPILAAVLNTLLVVAGLAALVGVEVRELPDVDRPSIS--------------VRTTYEGA 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        + +   +++T+ F D+      A+ V   +  
Sbjct: 67  APETIDQEVTQTIEGAVARVSGVKSISSNSQFGTSRVTMEFGDNVDMAVAANDVRDAIGR 126

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  D  +  ++        I+        +     + +  +  + ID++   +   
Sbjct: 127 VTNQLPDDADEPQIIKADSDSQPIMRLAVTSSTLSME--DLTKLVDDEVIDRLAAVDGVA 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + + + L     T   +S                            
Sbjct: 185 DVELYGDQEKVFRVDLNQAALASRGLTVTDISTALASAALDVPAGSLKSSTQDIVVRATA 244

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    + S + +                                   +           
Sbjct: 245 SLTKPEDFSNLLIKDN------------------------IRLRDVATVMLGADDESTSL 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +              + A        +V   +     G+   
Sbjct: 281 RSNGVQGVGLGVIRQAQSNTLNISTGVKAAVEAMSANLPQGTRIVVTSDDAVFIEGALHE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    + A +V++VL++ +   +  L+   ++ + +I T+  + ++G ++ + ++  IV
Sbjct: 341 VELALGLSALIVVVVLYLFLRDWRATLIPAITMPVALIGTIIAIYMVGFSINILTLLAIV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  +  T     + L F  
Sbjct: 401 LATGLVVDDAIVVLENIVRRRAEGMGPRAAAVLGTQEVFFAVIATTATLAAVFIPLSFLP 460

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F   +  ++ +S   A+++   +   +++    +                 
Sbjct: 461 GQLGGLFREFGFVLAFAVGLSSIVALTLCPMLASRMLKDGLKEPTGPLAWFGNVFASTYK 520

Query: 539 AIQFMRARFWGVGISILFSICSICLL---FTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                      + I +      +  +            + +  + + V A + V L   R
Sbjct: 521 KTLSACLNNPLIVIIVALVFSGLSWIAFGMIQNELTPREDRASVMMRVTAPQGVSLDYTR 580

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRL 621
             L+ ++      ++    +N     
Sbjct: 581 DQLQRIEENLQPLRDSGEIRNIYSIT 606



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 87/251 (34%), Gaps = 11/251 (4%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               + L  V + +        S ++   +   L  ++    +++  +  ++   + ++ 
Sbjct: 257 IKDNIRLRDVATVMLGADDESTSLRSNGVQGVGLGVIRQAQSNTLNISTGVKAAVEAMSA 316

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIYIWIRFKWYFALGAITTLILD 703
            +P  T               + +  + + + + I +++       W   L    T+ + 
Sbjct: 317 NLPQGTRIVVTSDDAVFIEGALHEVELALGLSALIVVVVLYLFLRDWRATLIPAITMPVA 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T+    + G   N+  + A++   G  V+D +VV + +   ++     +  R     
Sbjct: 377 LIGTIIAIYMVGFSINILTLLAIVLATGLVVDDAIVVLENI---VRRRAEGMGPRAAAVL 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              E     + T+       +P++      G +   F   +AF +     SSI +A  + 
Sbjct: 434 GTQEVFFAVIATTATLAAVFIPLSFLPGQLGGLFREFGFVLAFAVG---LSSI-VALTLC 489

Query: 821 LFIYDWRAKNA 831
             +     K+ 
Sbjct: 490 PMLASRMLKDG 500



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/285 (10%), Positives = 89/285 (31%), Gaps = 9/285 (3%)

Query: 552  ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
             S++        +    L+          L  +  +  D  +V  ++ +    +      
Sbjct: 740  RSVVDVFVDGDAIPVRLLSSTRPINDPTDLENVFLKTGDGKIVPISVIATLKENAVAPQL 799

Query: 612  DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            + E+                         ++++ +     +   +       E     ++
Sbjct: 800  NREQQLPSVGFTANLKDGVSLGQALEKVNELSQSLLPPGARLLPLGEAATLEENSSGMLL 859

Query: 672  GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTL 729
                +   + + +  +F+   +   I    + +       AL   G   N+ +   ++ L
Sbjct: 860  TFGFAIAIIFLVLAAQFESVLS-SIIIMSTVPLGLACAVIALLVTGSSLNVYSQIGLVLL 918

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +       L     + R+ I+K+ +  L   + T +A  +  +P+ + 
Sbjct: 919  VGVMAKNGILIVEFAN---HLRDQGATVREAIEKATSIRLRPVMMTMIATILGGVPLVLA 975

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    +  G+  A   +++I     L I  +    A
Sbjct: 976  QGAGAEARIALGWVIVGGLGFATLVTLYITPVSYLLIARFAKPQA 1020


>gi|209515339|ref|ZP_03264206.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. H160]
 gi|209504320|gb|EEA04309.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. H160]
          Length = 1053

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/560 (11%), Positives = 153/560 (27%), Gaps = 42/560 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +   G L        Q  + ++P   P               +V+    
Sbjct: 8   RPVFAWVIAFAVMVAGALAI-----TQLPISQYPRLAPP-------------RVVISATY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  +       +   L    G+  +        + +I + F      +     V  
Sbjct: 50  PGATAEQIDSDVASLIEQSLDGATGLSYYETTSDALGELEIDVMFTPGTNPDLAMVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L     +  +         ++L           +   S  + R  + ++  +
Sbjct: 110 RLKQVEPRLPQQVVQQGISVFNAANTFLMLVTLVSTDGTRDSTTLSDYLNRYLLRELKRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +LR+   + A +S      N++      G        
Sbjct: 170 PGVGSAELWDA-DEAMRIWLNPVKLREYSLSPADVSAAIRAQNSTVTAGSIGDAPATAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    ++                 +    +   + G           +       
Sbjct: 229 ALTASVNVHGQL-------------RTPAEFAAVVLKAQPGGGVVRLGDVARVEVGRDSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T +        L           +          
Sbjct: 276 TFWSRLNGHSAATVGIQLGPLGNALATSDAIRARIDALSKTLPAGIEVRIPYDGAHFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV  V+++ +   ++ LV    I + ++ +   +   G ++ + ++
Sbjct: 336 AIKEVVLTLCEAIVLVFCVMWLFLRELRYALVPTVVIPVTLLGSFLAMHAFGLSINVFTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    + +  +   +      +    I       +   + 
Sbjct: 396 FGLVLAIGILVDDAIVVVENVERIMHEEGLAPREATRKAMRQIGGAIGGVTAVLIAVFLP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMM-IFIIRYKKMKSIDINPLSRFF 532
           + FF    GG  R F+I M  +IL+S F A+S+  A+    +   +   ++     +R+ 
Sbjct: 456 MAFFSGGVGGIYRQFSIAMISAILVSAFMALSLAPALCANLLKPPRDHNALRGGVAARWL 515

Query: 533 LIPDCIAIQFMRARFWGVGI 552
                      R     V  
Sbjct: 516 AKFSSGFDGATRRYGVWVAR 535



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 80/194 (41%), Gaps = 6/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRF 688
           A +  +      +++ +P          G    +  I++ ++ +  + + +   +W    
Sbjct: 301 ATSDAIRARIDALSKTLPAGIEVRIPYDGAHFVKIAIKEVVLTLCEAIVLVFCVMWLFLR 360

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +  +AL     + + +  +      FG+  N+  +  ++  IG  V+D +VV + +    
Sbjct: 361 ELRYALVPTVVIPVTLLGSFLAMHAFGLSINVFTLFGLVLAIGILVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            ++   ++ R+   K++ +  G     +       LPMA + G V      F+I M   I
Sbjct: 419 IMHEEGLAPREATRKAMRQIGGAIGGVTAVLIAVFLPMAFFSGGVGGIYRQFSIAMISAI 478

Query: 806 VVAASSSIFIAAPI 819
           +V+A  ++ +A  +
Sbjct: 479 LVSAFMALSLAPAL 492



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 58/149 (38%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S +A+ + +   ++ W   L  +  + L I   +    + G+  ++     V+T+IG
Sbjct: 873  LALSLLAVFMALAALYESWTIPLSVLIVVPLGIIGAVAAMFMRGLPNDIYFKIGVVTVIG 932

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++    R    L+       D I ++        V TS A  + V+P+     
Sbjct: 933  LAGKNAILIVQFARD---LHARGADLADAIVEACTMRFRPIVMTSAAFLVGVVPLVFSTG 989

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G     S    +  G++VA    +    
Sbjct: 990  GGAESRHSIGTGVFGGMLVATVLGLIFTP 1018


>gi|15606721|ref|NP_214101.1| protein-export membrane protein [Aquifex aeolicus VF5]
 gi|6647810|sp|O67536|SECF_AQUAE RecName: Full=Protein-export membrane protein secF
 gi|2983948|gb|AAC07496.1| protein-export membrane protein [Aquifex aeolicus VF5]
          Length = 288

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/293 (26%), Positives = 142/293 (48%), Gaps = 11/293 (3%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I+F+R R    G+S L  + S+  L   GLN G+DF GG    V   + VD+  +R 
Sbjct: 1   MKQIKFLRLRKAAYGVSALLILISLLSLLFRGLNLGLDFTGGTLYEVKFEKSVDIGKLRK 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            + S  I     Q        +     +P + +            + +      +   E 
Sbjct: 61  TISSAGIKGFLIQETKEGTFVIKVKTGEPVEKLED----------VLKKFGKYELIRKET 110

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           +   +S EL +K +  ++ +   +L+Y+ +RF+  +  GAI  L  D+   LG +++   
Sbjct: 111 ISGVVSEELQKKAVFAILTALGGILLYLGVRFQPVWGFGAILALAHDVITVLGAYSITQR 170

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           E NL  V+A+L + GYSV D VV++DR+R+N++      +  +++D SIN+TL R++ TS
Sbjct: 171 EVNLEVVSAILVVAGYSVADTVVIFDRIRENLRK-KKGFTLEEIMDLSINQTLSRTIMTS 229

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +   ++ L + + GG  + +       G+VV   SS+F+A+  +L +     +
Sbjct: 230 LTTLVTALTLFILGGYALSNIMFAFVVGVVVGTYSSVFVASAFVLDMQKLFKR 282


>gi|115524521|ref|YP_781432.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Rhodopseudomonas palustris BisA53]
 gi|115518468|gb|ABJ06452.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris BisA53]
          Length = 1047

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/666 (11%), Positives = 184/666 (27%), Gaps = 39/666 (5%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF-LQMY 73
               +++     L +  + ++P+ +P               + +            +   
Sbjct: 16  LAFLIVLLGALSLLRLPVAQYPNVVPPT-------------VSVTATYPGASARTVMDSV 62

Query: 74  SDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +  +   +   EG+         +    + ++F      +     V   +    ++L   
Sbjct: 63  ALPIEQQINGVEGMIYMQSTSASDGSYNLVVTFDIGTDPDMAQVLVQNRVSLATAQLPSS 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                L    +    +          +   +  +        +++               
Sbjct: 123 VSTQGLNVKKKSTAILQFVSLFSSDSLYDHLFLANYAKINIQNELARLPGVGDVAVMGSG 182

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +    DP RL+    T + +       ++     + G      +   QY ++     
Sbjct: 183 AYAMRIWLDPDRLQSYGLTPSDVVNAIRQQSSEVTAGLIGGPPTPSTVNFQYTLDVVGRF 242

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           S           +    + +V  + D+ G +         +    +              
Sbjct: 243 S-----------ESADFEKIVVKAVDQGGGQLVRVGDLGRVELGSSSYGQSATFNGKPSA 291

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
               S  +  +     E+       +           V   +      S +    T  I 
Sbjct: 292 AIAISLLSGANALTVAESVNAKMTEMATSFPTGLDYKVSFDSTKFITASVNEVYETLFIA 351

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A LVL+V+ + +   +  LV   ++ + +I   A +S +G T+   S+  +VL IG+ VD
Sbjct: 352 AVLVLVVILLFLQDWRAMLVPATTVPVTIIGAFAAMSAMGFTVNTTSLFALVLAIGIVVD 411

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLFFFGGGAVR 486
             I++ E +        S   +     S  +  I       +   +    L    G   +
Sbjct: 412 DAIVIVEGVSRHIAGGMSSREAAVKAMSELFGPIIGITLVLMAVFLPAAALPGVTGKMYQ 471

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            FA+ +  + LIS   A+++        +R              F  + +     ++   
Sbjct: 472 QFALVIAATALISAINAVTLKPTQCALWLRAPVPPEQRAFVYRAFNAVYERCESVYVALI 531

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              V  S+  ++  + L+       GI F G  ++        D      +L+  +    
Sbjct: 532 RRLVAFSLPTTLVGLALV-------GIAFYGVSRVPTSFLPAEDQGYFIVSLKLPESASA 584

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                   +   +  Q    + V     +  +    T                + +++L 
Sbjct: 585 QRTEAVVARAVELVRQTAGVEGVIGVSGISPLDNNATLYNAGMLYVVLHDWDQRKTKDLS 644

Query: 667 RKGIVG 672
              I  
Sbjct: 645 IGAITA 650



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 54/440 (12%), Positives = 127/440 (28%), Gaps = 24/440 (5%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
               +  ++GI      A   N  +   +  +  + ++   S+    ++  + +   +   
Sbjct: 604  VEGVIGVSGISPLDNNATLYNAGMLYVVLHDWDQRKTKDLSIGAITAKVRTALGGLDTVI 663

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
             +  +     G G       TM + +       +++  A            SI     + 
Sbjct: 664  ALVILPPPIQGVGNT--GGFTMMVEMKNGSSDFMALQNAAAELAANAATQSSIANAASTF 721

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               +     +                       L +  +N  + F    Q+ V A+ P  
Sbjct: 722  KGNVKQLRLVVDRMKAETLGVTVGQVFSAVETYLGSTYVNQFVKFNNVFQVYVQADAPFR 781

Query: 591  LSVVRSNLESLQIGDISFQNFDGE--------------KNFLVRLQYQPGDSVAQTRVLE 636
            L  V      ++                           N           +   +    
Sbjct: 782  LQPVDVLKLKVKGSGGQMVPLGAVAYLTDEVGPPLVTLYNLYPAATIVGSPASGFSSGEA 841

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFAL 694
            M          L     T   G     +++   I  V  I+ + +   +  +++ W   L
Sbjct: 842  MTLMSEVAAKSLPPSMGTAWTGMSYQEQIVGNQIYYVFAIALLLVYFVLAGQYESWLQPL 901

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
              I  + L +  T+    L G+  +L     ++ LI  +  + +++ +  R+        
Sbjct: 902  AVILAVPLTLLGTVAALELSGLPNDLYTQIGIVLLIALAAKNAILIVEYARE---KCIHG 958

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASS 811
            +   D   ++        + TS A    +LP+A   G+  G   S  I +  G++ +   
Sbjct: 959  LPAADAAIEAARLRFRPILMTSFAFIFGMLPLAFASGAGAGARTSLGIAVVAGMLASTGL 1018

Query: 812  SIFIAAPILLFIYDWRAKNA 831
            ++         +    A+ A
Sbjct: 1019 AVLFVPAFFTVLQRMGARKA 1038



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   TT+ + I       +  G   N T++ A++  IG  V+D +V+ + +    
Sbjct: 365 DWRAMLVPATTVPVTIIGAFAAMSAMGFTVNTTSLFALVLAIGIVVDDAIVIVEGV---S 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +     +S R+   K+++E  G  +  ++      LP A   G        FA+ +A   
Sbjct: 422 RHIAGGMSSREAAVKAMSELFGPIIGITLVLMAVFLPAAALPGVTGKMYQQFALVIAATA 481

Query: 806 VVAASSSI 813
           +++A +++
Sbjct: 482 LISAINAV 489


>gi|317181244|dbj|BAJ59030.1| preprotein translocase subunit SecD [Helicobacter pylori F32]
          Length = 525

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 274/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++      G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICALLFGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMTMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|195941473|ref|ZP_03086855.1| preprotein translocase subunit SecF [Borrelia burgdorferi 80a]
 gi|216264374|ref|ZP_03436366.1| protein-export membrane protein SecF [Borrelia burgdorferi 156a]
 gi|221217844|ref|ZP_03589311.1| protein-export membrane protein SecF [Borrelia burgdorferi 72a]
 gi|224532406|ref|ZP_03673036.1| protein-export membrane protein SecF [Borrelia burgdorferi WI91-23]
 gi|224533287|ref|ZP_03673881.1| protein-export membrane protein SecF [Borrelia burgdorferi
           CA-11.2a]
 gi|225548950|ref|ZP_03769927.1| protein-export membrane protein SecF [Borrelia burgdorferi 94a]
 gi|225549964|ref|ZP_03770925.1| protein-export membrane protein SecF [Borrelia burgdorferi 118a]
 gi|226320348|ref|ZP_03795917.1| protein-export membrane protein SecF [Borrelia burgdorferi 29805]
 gi|215980847|gb|EEC21654.1| protein-export membrane protein SecF [Borrelia burgdorferi 156a]
 gi|221192150|gb|EEE18370.1| protein-export membrane protein SecF [Borrelia burgdorferi 72a]
 gi|224512713|gb|EEF83084.1| protein-export membrane protein SecF [Borrelia burgdorferi WI91-23]
 gi|224513452|gb|EEF83809.1| protein-export membrane protein SecF [Borrelia burgdorferi
           CA-11.2a]
 gi|225369423|gb|EEG98875.1| protein-export membrane protein SecF [Borrelia burgdorferi 118a]
 gi|225370553|gb|EEG99989.1| protein-export membrane protein SecF [Borrelia burgdorferi 94a]
 gi|226234211|gb|EEH32923.1| protein-export membrane protein SecF [Borrelia burgdorferi 29805]
 gi|312149568|gb|ADQ29639.1| protein-export membrane protein SecF [Borrelia burgdorferi N40]
          Length = 299

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 134/300 (44%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +   I      +    V   ++         +  G N+GIDF   + + +   +      
Sbjct: 1   MQRVINFSKYGSNVLIVSAVLILVGLIYTFFYHGGYNWGIDFSSRVNINLSIEKSNIKEN 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKITEIVPL 648
               + S     +   +                  V            ++ K        
Sbjct: 61  EIKEIFSPIYKTLDVNSIFSPDQNKSEFSIMVKSDVIDYAFKTEVQKTILDKLKETFDAN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + ++  +    S  L  + I  V+ + I +LIYI +RFK  +A+ +I ++  DI   +
Sbjct: 121 IEVLDSYFIDSSFSSTLRIRSIFLVLGTFILILIYITLRFKLSYAIASILSIFHDIFFIV 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  +F IE N   + A+LT+IGYS+ND ++++DR+R N+K   T  +F ++++ SI++T
Sbjct: 181 AFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRL-TDNTFLNVLNISISQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R+V TS+  F++V  + V+    I  F++    G++V   SS+FIA+PILL +Y    
Sbjct: 240 LSRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK 299


>gi|88705518|ref|ZP_01103228.1| multidrug efflux RND transporter [Congregibacter litoralis KT71]
 gi|88700031|gb|EAQ97140.1| multidrug efflux RND transporter [Congregibacter litoralis KT71]
          Length = 1051

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 72/572 (12%), Positives = 171/572 (29%), Gaps = 43/572 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++  ++I   GLL        +  L  +P                   + ++  
Sbjct: 9   RRPVMALVGSALIVAFGLLA-----FDRLPLREYPDIDSPI-------------VTVQTS 50

Query: 62  EDDFVNGFLQMYSDELR----SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++    EL     S ++       +    ++ +T+ F   R  ++ A+ V  
Sbjct: 51  YPGASAAVVENKITELIENRLSGIEGIKTLSSASYDGESTVTIEFNLDRDIDSAANDVRD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + GV   L  +        +   E  I  S    +     A+E +    R   D+  + 
Sbjct: 111 RVSGVLDNLPEEALPPETRKSNSDEQVIFWSHLVGEN--MSALELTDYARRYLEDRFAVL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +       +  +    D + L     T A +                         
Sbjct: 169 DGVARVRIGGGQIYSMRIWLDRNALVARGLTVADVELALRSQ------------------ 210

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N  L    ++ S                     +                 +    A  
Sbjct: 211 -NVELPAGTIKSSERDFVVRIDRSYQVAEDFRELVLARGEDGYLVRLADVARVELSSAES 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +       +++ +              +          +V          
Sbjct: 270 RSMFRGNTESMVGVGIVKQSKANALSVGRAVQEEIKRVNQQLPDGMELVVGFDRSVFVDA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +    T  I   LV+IV+F+ +   +  LV   ++ +++I + ++L +LG ++ L ++
Sbjct: 330 AINEVFSTLFIAGVLVVIVIFLFLGDPRSVLVPALTVPISLIGSFSMLWVLGYSINLLTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD +I+V E I     + +S   +   G  +    +  + +  +   + +
Sbjct: 390 LALVLAIGLVVDDSIVVLENIHRRLVRGESALVASYRGARQVAFAVIATTLVLVAVFIPI 449

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            F  G   R FA       +  +F++   +    +   +      +     ++   + + 
Sbjct: 450 TFLEGNVGRLFAEFAVAMAIAVIFSSFVALTLGPVICSKLLNKDKVSNRLANKVEELSEA 509

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           + +++ +     V  S LF    +  +F+   
Sbjct: 510 MELRYRKVLRPFVERSWLFIPVLLLCVFSAWQ 541



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 78/207 (37%), Gaps = 9/207 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A    ++ V +++ + + L    +  +       E+     +  ++  I + +++     
Sbjct: 299 AVQEEIKRVNQQLPDGMELVVGFDRSVFVDAAINEVFSTLFIAGVLVVIVIFLFLG---D 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  +     + G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 356 PRSVLVPALTVPISLIGSFSMLWVLGYSINLLTLLALVLAIGLVVDDSIVVLENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                 S      +   +     + T++      +P+    G+V      FA+ MA  ++
Sbjct: 413 RLVRGESALVASYRGARQVAFAVIATTLVLVAVFIPITFLEGNVGRLFAEFAVAMAIAVI 472

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            ++  ++ +   I   + +    + R+
Sbjct: 473 FSSFVALTLGPVICSKLLNKDKVSNRL 499



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/120 (11%), Positives = 51/120 (42%), Gaps = 4/120 (3%)

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +++ + + + +  +F+ +      + T+ + +   L    L G   N+ +   ++ L+G 
Sbjct: 860 LLALLIVYLVMAAQFESFVHPAIILFTVPVALLGGLWGLQLVGATLNIYSQVGLIMLVGL 919

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +  + +++ + +    ++      +   + +  ++ L   V T+    +  LP+ +  G 
Sbjct: 920 AAKNGILIVEFIN---QMRDAGFDYDQSVIEGASKRLRPIVMTAFTTVMGALPLVLSSGP 976


>gi|311747279|ref|ZP_07721064.1| HAE1 efflux family protein [Algoriphagus sp. PR1]
 gi|311302632|gb|EAZ83155.2| HAE1 efflux family protein [Algoriphagus sp. PR1]
          Length = 1050

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/522 (12%), Positives = 156/522 (29%), Gaps = 39/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G L  +        + +FP  +P               + +   
Sbjct: 7   KRPILSTVISVIIVFMGGLSLI-----SLPITQFPEIVPP-------------SVTVTAK 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                   L       L   +    G+   +     +    IT+ F      +  A  V 
Sbjct: 49  YTGANAEVLAKAVATPLERAINGVPGMTYMNSVNTNDGVTVITVVFQVGTDPDQAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V  +L  +  +  ++T  E    ++                        + ++  
Sbjct: 109 NRVATVIDELPEEVIRAGVMTEKEVNSMLMYLNIMTSDTTQDEKFVYNFADINILPELKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    +P R+     +   ++      N        G+   +D 
Sbjct: 169 IDGVGFVEIMGSREYAMRIWMNPDRMVAYNISPQDITAAIRKQNVEAAPGKSGISSDQDP 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY++              T  F+ +T    + +     G+    +   +        
Sbjct: 229 QMLQYVL------------RYTGKFNQETDYENITLKALPDGSLLRIKDVAEVTFDSQDY 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
            +       P  +  I       +          +  +  +   P  +  V         
Sbjct: 277 NMASITDGRPSASIMIKQRPGSNAREVISNIKDKMGELQESSFPPGMIFNVSYDVSRFLD 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV IV+F+ +   +  L+   ++ +++I T   + L G ++ + +
Sbjct: 337 ASIHEVIKTLIEAFILVSIVVFIFLQDFRSTLIPAIAVPVSLIGTFFFMDLFGFSINMLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD+ I+V E +  +      +   +           I    +      V
Sbjct: 397 LFALVLAIGIVVDNAIVVVEAVHVKMHDLKMNAMDATVEAMKEIGGAIIAITLVMSAVFV 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + F  G      R F++T+ ++I+IS   A+++  A+   +
Sbjct: 457 PVGFMEGPIGIFYRQFSLTLAIAIVISGVNALTLSPALCAML 498



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 93/238 (39%), Gaps = 6/238 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V     +S      S  +     + +++ +         + + + + +      P   I
Sbjct: 265 DVAEVTFDSQDYNMASITDGRPSASIMIKQRPGSNAREVISNIKDKMGELQESSFPPGMI 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
            N      +     I + I  +I + I + I ++I    +   L     + + +  T  F
Sbjct: 325 FNVSYDVSRFLDASIHEVIKTLIEAFILVSIVVFIFLQDFRSTLIPAIAVPVSLIGTFFF 384

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LFG   N+  + A++  IG  V++ +VV + +   +K++   ++  D   +++ E  G
Sbjct: 385 MDLFGFSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHDLKMNAMDATVEAMKEIGG 442

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +  ++      +P+    G +      F++ +A  IV++  +++ ++  +   +  
Sbjct: 443 AIIAITLVMSAVFVPVGFMEGPIGIFYRQFSLTLAIAIVISGVNALTLSPALCAMLLK 500



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 75/224 (33%), Gaps = 10/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV- 673
              + +          A         + +         +  +I    I+RE I  G   + 
Sbjct: 817  TRYNMYTSAMINGEAAAGFSSGDAIQAVEATALEFLPRGFDIDWSGITREQIASGNQAIY 876

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I +   + +Y+ +      +   L  I +L   I        L G+E N+ A  +++ LI
Sbjct: 877  IFAICLVFVYLLLAAQYESYLLPLPVILSLPAGIFGAFLLLKLTGLENNIYAQVSLVMLI 936

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G    + +++ +     ++     +   +       E L   + TS A    ++P+    
Sbjct: 937  GLLGKNAILIIEIA---IQSRNKGMGILESALHGGVERLRPILMTSFAFVCGLIPLTLAS 993

Query: 790  GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G   I   +     A G+++     +F+   + +      ++  
Sbjct: 994  GAGAIGNRTIGTAAAGGMMIGTVVGVFLIPGLYVVFETLASRKK 1037


>gi|315585946|gb|ADU40327.1| protein-export membrane protein SecD [Helicobacter pylori 35A]
          Length = 525

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICTLLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDVLLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMTMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|58582428|ref|YP_201444.1| multidrug efflux transporter [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84624302|ref|YP_451674.1| multidrug efflux transporter [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58427022|gb|AAW76059.1| multidrug efflux transporter [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84368242|dbj|BAE69400.1| multidrug efflux transporter [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 1056

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/613 (10%), Positives = 157/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PVFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +   +  +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKEVTQVIEQQLTGIDHLLYFNSSSAANGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D    +    +  +  + ++QI    
Sbjct: 111 VSLAAPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSINRDALNDIVGSRLLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G     +   
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPEGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPEQFENIILRTDNNGATVRLKDVARVTVGPSSYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     +        L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSDAVSAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVIHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYVIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A+S   A+            +    ++ D   
Sbjct: 457 SLQPGASGAIYKQFALTIAMSMGFSAFLALSFTPALCGAFLKSTHSTKKNWVYRTFDKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R+  W +    L  +C        G     + +G     V    
Sbjct: 517 DKLAHRYVGVVGHTLKRSPPWMIAFVALMVLCGFLFTRMPGSFLPDEDQGFAVAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
                        
Sbjct: 577 GATKIRTNEAFAQ 589



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 57/145 (39%), Gaps = 7/145 (4%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLMVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         S R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 949  VEQRAA---GKSLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANARHSIGTGV 1005

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW 826
              G+V A    + I  P+   +   
Sbjct: 1006 IGGMVFATVLGL-IFIPLFFVVVRR 1029



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYVIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 477

Query: 805 IVVAASSSIFIAAPI 819
           +  +A  ++     +
Sbjct: 478 MGFSAFLALSFTPAL 492



 Score = 42.0 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 49/527 (9%), Positives = 129/527 (24%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+ PW++   +++   G L        +      P              +G +  ++++ 
Sbjct: 533  RSPPWMIAFVALMVLCGFL------FTRMPGSFLPDED-----------QGFAVAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRS------------FLKKEGIGVFSMRQIQNKITLSFADSRFKE 109
                          ++R+             +                I L   D R   
Sbjct: 575  PPGATKIRTNEAFAQMRAVLEKQPAVEGLLQIAGFSFLGSGENVGMGFIRLKPWDERDVT 634

Query: 110  NIA--DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
                  ++      +            +    +     +  Q+         I     ++
Sbjct: 635  AGQLIQQLNGAFHSIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALINARNIVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +  ++             +   +QL  ++  ++   L  +    S   +L       + 
Sbjct: 695  GKAAEKQDTLVGVRPNGLENAPQLQLHVDRVQAQSMGLNVSDIYSSIQLMLAPVYVNDYF 754

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
               R  R +           E          +  +  T       +  +        V +
Sbjct: 755  AEGRIKRVNMRADDQFRAGPE----------SLRNFFTPSTTATGTDGQPAMIPLSNVVK 804

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                     +      +A  I      G++       +E           G     ++  
Sbjct: 805  AEWNYASPALNRYNGYSAVNIVGNPAPGRSSGQAMSAMEEIVNNDLPPGFGFDWSGMSYQ 864

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
            E     A     ++      +    +              +     + + V+  +    L
Sbjct: 865  EIIAGNAATLLLALSVVVVFLCLAAL-------YESWSIPVAVLMVVPIGVLGAITFSML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G    L    G++  IGLA  + IL+ E   E+    +S+  +        +  I  ++
Sbjct: 918  RGLPNDLYFKIGMITVIGLAAKNAILIVEFAVEQRAAGKSLREATLEAAHLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               ++  + L      G  A       +   ++ +    +  +    
Sbjct: 978  FAFILGVLPLAISTGAGANARHSIGTGVIGGMVFATVLGLIFIPLFF 1024


>gi|332704705|ref|ZP_08424793.1| acriflavin resistance protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554854|gb|EGJ51898.1| acriflavin resistance protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 1048

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/524 (12%), Positives = 161/524 (30%), Gaps = 41/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   ++  +G +      L +  +D  P                      E  
Sbjct: 10  RRPVFTAMATLIVLILGGVS-----LSRLPIDLMPDITYPTL---------SISTTYENA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +           + Q+ + ++F      +  A+ V   L  
Sbjct: 56  SPQEIETLVTRPVEQALSAVPGVEEVTSVSSEGQSSVRVTFTWGTDLDAAANDVRDRLDR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D  + +L         +++   +        ++    +  +   +I       
Sbjct: 116 MLSSLPEDVDRPVLRKFDLASFPVLILGASS---RLDPVQMRRLLDDEVRYRIERVPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++  +  P R++ L  +  ++                             
Sbjct: 173 ALDIWGGLEREIHVDLLPERIKALDISLDQIVTRIRNS--------------------NL 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +   V  SG H        +  +   + D    E             +      V    
Sbjct: 213 TLPAGVVESGNHEISIRTPGEFASLDELRDTVVAERSGVTVRLRDVAEVQDSWQRVTRIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      +   S ++  +     E        +      +++  +          S + 
Sbjct: 273 RVNGEPGVRLSVSKQSGTNTVEVAERVLAELERINEDIPQVRIVPIV-DTSLYIKRSITN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +        ++VL   + + +  L+   +I ++++ T  L+   G TL L ++ G+ 
Sbjct: 332 VASSTIYGGLFAVLVLLAFLRHVRSTLIVAAAIPISIVATFMLIYFGGFTLNLMTLGGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           LG+G+ VD+ I+V E I   + + +    +   G     + I  S +T L+  + L F  
Sbjct: 392 LGVGMLVDNAIVVLENIHRLHMQGRPPKSAAVSGAGEVAAAITASTLTTLVVFLPLVFVR 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   +  A  +  S++ S+  A+++V  +   I+     +S
Sbjct: 452 GMAGVMFKQLAYVVSFSLICSLGVALTLVPMLASTIMVPSVPRS 495



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 10/289 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           +  +R     +   ++ S      + T G    +D      +   +   V L  V    +
Sbjct: 204 VTRIRNSNLTLPAGVVESGNHEISIRTPGEFASLDELRDTVVAERSGVTVRLRDVAEVQD 263

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           S Q      +        L   +    ++V     +    ++I E +P   I        
Sbjct: 264 SWQRVTRIVRVNGEPGVRLSVSKQSGTNTVEVAERVLAELERINEDIPQVRIVPIVDTSL 323

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I R +       +     A+L+ +         L     + + I  T       G   N
Sbjct: 324 YIKRSITNVASSTIYGGLFAVLVLLAFLRHVRSTLIVAAAIPISIVATFMLIYFGGFTLN 383

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +  +   +G  V++ +VV + +    +L+      +        E       +++  
Sbjct: 384 LMTLGGLALGVGMLVDNAIVVLENIH---RLHMQGRPPKSAAVSGAGEVAAAITASTLTT 440

Query: 780 FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI----FIAAPILL 821
            +  LP+       G +    A  ++F ++ +   ++     +A+ I++
Sbjct: 441 LVVFLPLVFVRGMAGVMFKQLAYVVSFSLICSLGVALTLVPMLASTIMV 489



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 82/249 (32%), Gaps = 9/249 (3%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             + +     L +L     S      E+    R+    G+   +     +   +       
Sbjct: 781  ANATGQAVVLRNLVTVQPSSGPVSIERQDQERIVTVSGNLSGRDMGSVIADMRAELATLP 840

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW---IRFKWYFALGAITTLILDIT 705
                     G     +    G + + +    +L+Y+    +          + ++ L I 
Sbjct: 841  VPRGFNISFGGDFEEQQEVFGELAMGLILALVLVYMVMACLYESLRDPFVVMFSVPLAIV 900

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              +    L    FN+ +    + L G  VN+ +++ D  + N          R+ I+++ 
Sbjct: 901  GVVLMLFLTRTTFNVQSFIGCIMLGGIIVNNAILLVD--QTNQLRREEGFGLREAIEEAG 958

Query: 766  NETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS+     +LP+A+  G         A  +  G+  +   ++ +  P++  
Sbjct: 959  RRRLRPILMTSLTTVFGLLPLALGLGEGGEAQAPMARAVIGGLTSSTLITL-VFVPVMYS 1017

Query: 823  IYDWRAKNA 831
            +     + +
Sbjct: 1018 LISGNERRS 1026


>gi|308062825|gb|ADO04713.1| preprotein translocase subunit SecD [Helicobacter pylori Cuz20]
          Length = 525

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 157/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICTLLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L LA++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACLALVVNLFLILAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   L   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACLALVVNLFLILAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|168701201|ref|ZP_02733478.1| cation/multidrug efflux pump [Gemmata obscuriglobus UQM 2246]
          Length = 1122

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/509 (11%), Positives = 128/509 (25%), Gaps = 35/509 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   +   G +      L    + ++P   P                V     
Sbjct: 8   RPIFAAVLSLAVVLTGGIA-----LSTLPVAQYPEIAPPTVE---------VSAVYPGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++K               +T++F            V   +  
Sbjct: 54  ARVVADTVASPVEQQVNGVEKMLYMSSQCTNDGTYTLTVTFEPGADLNIAQVLVQNRVSM 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA----IEQSMEIIRQRIDQIGIS 177
               L    ++  +    +    +++           A    +  S     Q  D +   
Sbjct: 114 AEPVLPDLVRRRGISVKKKSPNILMMVNLFTTDQSGDAAATNLFLSNYATIQIADGLKRI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                     +    +    DP RL+ +      +       N        G +      
Sbjct: 174 PGVGDVTYLGQRDYSMRVWLDPQRLQAVGMAPQDVIAAVNEQNIQVAAGQIGQQPTPSGQ 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +     +                 +    +          +      I       
Sbjct: 234 VFQYTMTTLGRL-------------ESPEQFGAIVLKRGTEGTLVYLRDVARIELGALSY 280

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +              LR          +          
Sbjct: 281 DQTCTLNGRPSVALSVYQLPGSNALEVSGRVKAKMEELREHFPAGIEYEIVYDTTPFINE 340

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+ + +   +  ++   ++ + V+ T A L+  G +L   ++
Sbjct: 341 SILEVFRTLIEAVVLVAAVVLLFLQSWRAAIIPLAAVPVAVVGTFAALTCAGFSLNTLTL 400

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT---ALIAT 474
            G+VL IG+ VD  I+V E ++       S   +     +     +    +      I  
Sbjct: 401 FGLVLAIGIVVDDAIVVVEAVQHHVDHGMSARDAAARAMTEVAGPVVAVGLVLSAVFIPC 460

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTA 503
             L    G   R FA+T+ +S L+S F +
Sbjct: 461 AFLGGVTGQFFRQFAVTIAVSTLLSAFNS 489



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 51/144 (35%), Gaps = 9/144 (6%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L       ++ N+      + LIG +  + +++ +  +   
Sbjct: 958  SWALPLAVILVVPMCLLCALAGVLAAELDMNIFTQIGFVVLIGLACKNAILIVEFAK--- 1014

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +     ++ R     +    L   V TS+A  + V P+ V    G  +  +    +  G+
Sbjct: 1015 QKREEGMNGRAATLAACQLRLRPIVMTSIAFILGVAPLLVAEGAGAEMRRALGTAVFAGM 1074

Query: 806  VVAASSSIFIAAPILL---FIYDW 826
            +   +  +F+         ++   
Sbjct: 1075 IGVTAFGVFLTPVFYYAIQWLGSR 1098


>gi|226321351|ref|ZP_03796878.1| protein-export membrane protein SecF [Borrelia burgdorferi Bol26]
 gi|226233147|gb|EEH31899.1| protein-export membrane protein SecF [Borrelia burgdorferi Bol26]
          Length = 299

 Score =  169 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 135/300 (45%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +   I      +    V   ++         +  G N+GIDF   + + +   +      
Sbjct: 1   MQRVINFSKYGSNVLIVSAVLILVGLIYTFFYHGGYNWGIDFSSRVNINLSIEKSNIKEN 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKITEIVPL 648
               + S     +   +                  V            ++ K        
Sbjct: 61  EIKEIFSPIYKTLDVNSIFSPDQNKSEFSIMVKSDVIDYAFKTEVQKTILDKLKETFDAN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + ++  +    S  L  + I  V+ + I +LIYI +RFK  +A+ +I +++ DI   +
Sbjct: 121 IEVLDSYFIDSSFSSTLRIRSIFLVLGTFILILIYITLRFKLSYAIASILSILHDIFFIV 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  +F IE N   + A+LT+IGYS+ND ++++DR+R N+K   T  +F ++++ SI++T
Sbjct: 181 AFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRL-TDNTFLNVLNISISQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R+V TS+  F++V  + V+    I  F++    G++V   SS+FIA+PILL +Y    
Sbjct: 240 LSRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK 299


>gi|169795309|ref|YP_001713102.1| multidrug ABC transporter [Acinetobacter baumannii AYE]
 gi|213158705|ref|YP_002320003.1| efflux transporter, RND family [Acinetobacter baumannii AB0057]
 gi|215482842|ref|YP_002325045.1| hypothetical protein ABBFA_001138 [Acinetobacter baumannii
           AB307-0294]
 gi|332850418|ref|ZP_08432738.1| multidrug efflux pump BpeF [Acinetobacter baumannii 6013150]
 gi|332871856|ref|ZP_08440279.1| multidrug efflux pump BpeF [Acinetobacter baumannii 6013113]
 gi|88758826|emb|CAJ77856.1| cation/multidrug efflux pump [Acinetobacter baumannii AYE]
 gi|169148236|emb|CAM86099.1| putative Multidrug/solvent efflux pump membrane transporter
           [Acinetobacter baumannii AYE]
 gi|213057865|gb|ACJ42767.1| efflux transporter, RND family [Acinetobacter baumannii AB0057]
 gi|213986232|gb|ACJ56531.1| hypothetical protein ABBFA_001138 [Acinetobacter baumannii
           AB307-0294]
 gi|332730689|gb|EGJ62000.1| multidrug efflux pump BpeF [Acinetobacter baumannii 6013150]
 gi|332731185|gb|EGJ62485.1| multidrug efflux pump BpeF [Acinetobacter baumannii 6013113]
          Length = 1059

 Score =  169 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/503 (10%), Positives = 130/503 (25%), Gaps = 30/503 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPSNSPLQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 +    +      
Sbjct: 236 NAQGRL---------------TTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAITLVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIEAGLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMT 460

Query: 482 GGAVRGFAITMGLSILISMFTAI 504
           G   + +        + ++ +A 
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAF 483



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 117/395 (29%), Gaps = 18/395 (4%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
            ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 652  AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 711

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   +  M           ++D++ +           +      + G      F+   
Sbjct: 712  AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 771

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +          L +         V  S+L ++                   
Sbjct: 772  RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 831

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 832  INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 890

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++     L  I  + + I   L    L   + N+     ++ L+G +  + ++
Sbjct: 891  FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTAGDNNIFTQIGLMVLVGLACKNAIL 950

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  R+   L     +      ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 951  IVEFARE---LEMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 1007

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              + + FG++      +F+     + I    +K+ 
Sbjct: 1008 MGVAVFFGMIGVTFFGLFLTPAFYVLIRTLNSKHK 1042


>gi|33599425|ref|NP_886985.1| putative multidrug-efflux system protein [Bordetella bronchiseptica
           RB50]
 gi|33567021|emb|CAE30934.1| putative multidrug-efflux system protein [Bordetella bronchiseptica
           RB50]
          Length = 1061

 Score =  169 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/571 (12%), Positives = 156/571 (27%), Gaps = 33/571 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVVVLLAGLLAMF-----QLPIAEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEAINGVEDMLYMQSQANSDGNLTLTVNFKLGVDPDQAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   I    D++       
Sbjct: 116 ALPRLPPDVQRLGVTTIKSSPTLTLVVHLISPNDRYDITYLRNYAIINVKDRLARLNGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T +++       N      + G    +     Q 
Sbjct: 176 EVAVWGSGNYAMRVWLDPQKVAQRGMTASEVIAAIREQNVQVAAGVIGASPTQGDVPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      +           
Sbjct: 236 NVNTRGRL-------------QTEQEFRDIILKTSPDGGVTYLADVARVELDAQEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L     P     +E         S   
Sbjct: 283 LLDNRQAIGMGIMQAPGANALDVADQVRATMQELAQDFPPGVEYRIEYDPTQFVRASIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T ALL + G ++   S+ G+V
Sbjct: 343 VVHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFALLLMFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +           I    +T     V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNISAGLTPREATYRAMREVSGPIIAIALTLCAVFVPLAFMT 462

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK--SIDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +             
Sbjct: 463 GLSGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLKGHHDKPDWLTRGMNRWLGGFFS 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTH 567
                F RA                  +  +
Sbjct: 523 GFNRVFGRASESYATGVSGVIRRKASAMGVY 553



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILAALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L    ++ R+   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LELQGMAPREAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGAEMRQAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +F+     + +    A+ 
Sbjct: 1019 LGVTLFGLFLTPVFYVLLRALGARR 1043



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFALLLMFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIS 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                ++ R+   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 425 A---GLTPREATYRAMREVSGPIIAIALTLCAVFVPLAFMTGLSGQFYKQFAMTIAISTV 481

Query: 807 VAASSSI 813
           ++A +S+
Sbjct: 482 ISAFNSL 488


>gi|254523372|ref|ZP_05135427.1| protein-export membrane protein SecF [Stenotrophomonas sp. SKA14]
 gi|219720963|gb|EED39488.1| protein-export membrane protein SecF [Stenotrophomonas sp. SKA14]
          Length = 326

 Score =  169 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 158/298 (53%), Gaps = 9/298 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            ++P+   I FMR R   + ++I+  + SI ++   G NY +DF GG  +    ++ VD+
Sbjct: 7   HILPNDTKIDFMRWRHVAMAVTIVVFLASIAIIGFKGFNYALDFTGGTLIEARFDKAVDV 66

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRL-------QYQPGDSVAQTRVLEMVKKKITE 644
             VR+ LE         Q+  G  + L+RL             +         V K ++ 
Sbjct: 67  EQVRTKLEENGFDGAQVQSVGGNTDLLIRLAPHGEHAPGTGDAAAEDKATAAAVVKALST 126

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
               +T+   E VGP+I ++L   G+   I      LIYI +RF+W FA+ A    + D+
Sbjct: 127 ADNQATVLRNEFVGPQIGKDLAMNGLYATIFMLAGFLIYIAVRFEWKFAVTASIVAMFDL 186

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T+ + +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   +++++S
Sbjct: 187 IVTVAYVSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSL--RVDSMEVLNRS 244

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           IN+TL R+V T++  F+S L + ++GGS +   A     G V+   SSI +A P+L  
Sbjct: 245 INQTLSRTVITAVMFFLSALALYMYGGSSMEGLAETHMIGAVIVVLSSILVAVPMLTI 302


>gi|187736509|ref|YP_001878621.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187426561|gb|ACD05840.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 1035

 Score =  169 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 80/668 (11%), Positives = 187/668 (27%), Gaps = 36/668 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  ++   G +      L Q  +  +P   P   I+                
Sbjct: 8   KRPKFAIVIAILMMLAGGI-----CLNQLPIAEYPEIAP-TSIN--------VQATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
               V   L    +E  + L+                ++L+F      +     V   L+
Sbjct: 54  SAQVVMETLASPIEEELNGLENLLYFSSKSDNTGGYSLSLTFKSGTNSDINMVNVQNALK 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  KL  +     +         +             ++E +  +  +  D++      
Sbjct: 114 RVEYKLPKEVTDQGIKIKKRSSDILGFFAFRST--SMSSLELNNFVKTRVKDEVARVPGI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D  R+  L  T   +S      N        G     +    +
Sbjct: 172 SAVNLMPEKNYSMRIWLDALRMSALNITPDDVSNAIKAQNVQAAAGSIGSEGENNFIQYK 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  ++                   +    I                 I          
Sbjct: 232 VNVTGRL---------------QTVEEFSKIIVRTGQDGHVTRLDDIARIELGAETYTGS 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +    +         L          +V          + +
Sbjct: 277 SRNNGEDSVNMAVYRLDDANALEAMNGVKDTLEKLEKRFPEGVSYVVSYDPTQYISATMA 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV+ + ++ +   +  L+   +I +++I T A+L  LG ++ + ++ G+
Sbjct: 337 EIVETLVIALILVVGITYLFLQDWRATLIPALAIPVSLIGTFAILLPLGFSINVLTMFGL 396

Query: 421 VLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L IG  VD  I+V E        ++ S   +      +    I  + +  +   V + F
Sbjct: 397 ILVIGSLVDDGIIVVENTMRILETEDLSPEEATRKSMHQITGAIIATTLVTVAIYVPIAF 456

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           FGG        F++TM +++ +S   ++++  A+ + +++ K+ K    +    F +  +
Sbjct: 457 FGGMVGNIYMQFSVTMCVALCLSAINSLTLSPALCVLLLKRKQKKQSRFSLFRPFNVSLE 516

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                +++     V  + L  I    +L  +   +    K  +          D+ +   
Sbjct: 517 WARKSYIKCAGIMVRRAWLTLILLAAVLVGNWKLFETVPKSFLPPEDKGTVFCDIQLAPG 576

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
                    +            VR               E +   I ++ P    +  E+
Sbjct: 577 ATLGRTEQAMRSAEQKLMSIPGVRQVSSTSGFSFMGGNGENLGMCIAQLDPWDKRKTPEL 636

Query: 657 VGPKISRE 664
               I ++
Sbjct: 637 SLDSIMQK 644



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 97/261 (37%), Gaps = 15/261 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V   +   ++ +          +    +        V +     D       +  VK 
Sbjct: 247 IIVRTGQDGHVTRLDDIARIELGAETYTGSSRNNGEDSVNMAVYRLDDANALEAMNGVKD 306

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAML-IYIWIRFKWYFALGA 696
            + ++        + +V    ++ +       +  ++I+ I ++ I       W   L  
Sbjct: 307 TLEKLEKRFPEGVSYVVSYDPTQYISATMAEIVETLVIALILVVGITYLFLQDWRATLIP 366

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTT 753
              + + +  T       G   N+  +  ++ +IG  V+D ++V +   R+ +     T 
Sbjct: 367 ALAIPVSLIGTFAILLPLGFSINVLTMFGLILVIGSLVDDGIIVVENTMRILE-----TE 421

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAAS 810
            +S  +   KS+++  G  + T++      +P+A +GG V      F++ M   + ++A 
Sbjct: 422 DLSPEEATRKSMHQITGAIIATTLVTVAIYVPIAFFGGMVGNIYMQFSVTMCVALCLSAI 481

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
           +S+ ++  + + +   + K  
Sbjct: 482 NSLTLSPALCVLLLKRKQKKQ 502



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/403 (10%), Positives = 128/403 (31%), Gaps = 22/403 (5%)

Query: 442  NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
              K ++   SLD    +A     +               G G   G +  +  S   +  
Sbjct: 628  WDKRKTPELSLDSIMQKASILCDEIPAAKATVFSPPAIMGLGLTGGVSFMLQASGEETPK 687

Query: 502  TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
                +   ++  I +            +    +   I  +  ++    V          +
Sbjct: 688  DLERVTNDLLDKINKLPGTMYARSAYEANTPQLFLNIDREKAQSMHVPVSRIFTTLQSKL 747

Query: 562  CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF-------QNFDGE 614
              ++ +  N  I +   +++   A     ++ + +       G +             G 
Sbjct: 748  ASMYINDFNL-IGYTFKVKMQSAAEDRTTINDIMNTYIQNDQGQMVPLSSVATLSYMVGP 806

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-GIVGV 673
            +      Q    +  AQ +      + + +I  +   +N  I    +S +  +  G + +
Sbjct: 807  RQISRFNQLMSAEVTAQAKPGVSSGELMNQIEAIPLPENYSITWTDMSYQERQNDGKIVL 866

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++    +  Y+++      W   +  I ++ + +   L    +     ++ A   ++ L+
Sbjct: 867  LMGMALLFGYLFLVAQYESWTVPISVIVSVSVALLGALLGLIICNTPLSIYAQLGLVMLV 926

Query: 731  GYSVNDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            G +  + +++  + +M          +  ++   +   +     + T+++  I V PM +
Sbjct: 927  GLAGKNAILMVEFSKM-----ERERGVPIQEAALEGARQRFRAVMMTAISFIIGVFPMVI 981

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                G +   +  I   +G+++A    I     +      +R 
Sbjct: 982  ASGAGAASRKAIGISTFYGMILATVVGILFIPALYAMFQRYRE 1024



 Score = 42.8 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 60/529 (11%), Positives = 148/529 (27%), Gaps = 37/529 (6%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M    WL ++      +G                 P   P+++ ++  D++         
Sbjct: 529  MVRRAWLTLILLAAVLVGNW----KLFETVPKSFLP---PEDKGTVFCDIQL-------- 573

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                   G  +         L    + +  +RQ+ +    SF     +        L   
Sbjct: 574  -APGATLGRTEQAMRSAEQKL----MSIPGVRQVSSTSGFSFMGGNGENLGMCIAQL--- 625

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                       K      +   I    S    +   + A   S   I       G+S   
Sbjct: 626  -------DPWDKRKTPELSLDSIMQKASILCDEIPAAKATVFSPPAIMGLGLTGGVSFML 678

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      ++        ++ +L GT    S ++                      ++
Sbjct: 679  QASGEETPKDLERVTNDLLDKINKLPGTMYARSAYEANTPQLFLNIDREKAQSMHVPVSR 738

Query: 241  YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                 + +++ +++N           K                   +++ G+ + +    
Sbjct: 739  IFTTLQSKLASMYINDFNLIGYTFKVKMQSAAEDRTTINDIMNTYIQNDQGQMVPLSSVA 798

Query: 301  RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +       Q     +   +        G+ +  L      I L              + 
Sbjct: 799  TLSYMVGPRQISRFNQLMSAEVTAQAKPGVSSGELMNQIEAIPLPENYSITWTDMSYQER 858

Query: 361  IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI--- 417
               G   ++ G+ L+  ++ ++          S+ ++V + L    L       P     
Sbjct: 859  QNDGKIVLLMGMALLFGYLFLVAQYESWTVPISVIVSVSVALLGALLGLIICNTPLSIYA 918

Query: 418  -AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              G+V+ +GLA  + IL+ E  + E  +   +  +   G  + +  +  + I+ +I    
Sbjct: 919  QLGLVMLVGLAGKNAILMVEFSKMERERGVPIQEAALEGARQRFRAVMMTAISFIIGVFP 978

Query: 477  LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +      G  + +   I+    ++++    I  + A+     RY++   
Sbjct: 979  MVIASGAGAASRKAIGISTFYGMILATVVGILFIPALYAMFQRYREWVK 1027


>gi|253996258|ref|YP_003048322.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylotenera mobilis JLW8]
 gi|253982937|gb|ACT47795.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylotenera mobilis JLW8]
          Length = 1051

 Score =  169 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/613 (13%), Positives = 179/613 (29%), Gaps = 45/613 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL  A      +  + ++P   P               +++    
Sbjct: 8   RPIFASVLSIIIVLAGLAAAF-----KLPIAQYPQIAPPT-------------VLITATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   L   EG+  F+     +    IT +F      +     V+ 
Sbjct: 50  PGASADTLSKTVAAPIEEQLSGVEGLLYFNSSADSSGTLTITATFEVGTNVDQATFNVSN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  LV        +++      Q     +  S       +D+I   
Sbjct: 110 RVNIALPRLPDEVRRTGLVVQKRSNDILLVVMLTDKQKKYDTLFLSNYATLNVLDEIKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     +        +     P R+ QL  TT  ++      N        G        
Sbjct: 170 KGVGDSVIFGAQDYSMRIWLRPDRMAQLGVTTTDIANAIRAQNAQYAAGKIGQDPAPSDQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  K  +               + +    I   +             I       
Sbjct: 230 QLVYTVTAKGRL-------------IDSSEFGNIIIRADGQRGVLHLKDVARIELGSQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T          L+A         V          
Sbjct: 277 NVRTALDGTPGVGIPIFLQTGANALDTAAAVKAKMTELKARFPEGVDWEVPYDTSDFVKA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A L + G ++   ++
Sbjct: 337 SIEEVLKTLGEAMVLVVLVVFLFLQSFRATLIPMIAVPISLIGTFAGLWIFGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIA 473
             +VL IG+ VD  I+V E +      +  S   +      +   A   I        + 
Sbjct: 397 FAMVLSIGIVVDDAIVVLENVERLMEEEKLSAIKAAVKSMEQVSAAVVAIVLVLCAVFVP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPL 528
              L    G   + FA+T+ ++++IS   A+++  A+   +++         K+ +   +
Sbjct: 457 VAFLGGIAGEMYKQFAVTVAVAVVISGIVALTLTPALCAILLKKTHGESAFFKAFNRMFV 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
               +    + +            + + +I  + L    G     + +G +   V+    
Sbjct: 517 RITHVYTAVVNLTLHHRIIGTFVFAAIIAIVVVLLRVIPGSFVPPEDQGYVISAVIMPDG 576

Query: 589 VDLSVVRSNLESL 601
             LS      ES+
Sbjct: 577 ATLSRTSKTTESV 589



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 74/201 (36%), Gaps = 10/201 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
             + +KI         Q          +      I+    + I + + +  +F+ W   L 
Sbjct: 833  KMVEKIAAQNLPDGYQIAWTGQAYQEKRTGSAAILAFGFAIIMVFLILAAQFETWALPLA 892

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             I  +   +   L      G+  ++     ++TL+G +  + +++ +      +L    +
Sbjct: 893  VIMAVPFALAGALIAVLFRGMPNDIYFQIGLITLVGLAAKNAILIVEFA---SQLMEEGL 949

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS-S 811
               +   ++        V TSMA  + ++P+ +    G +   S    +  G+++A   +
Sbjct: 950  PIAEAALEAARLRFRPIVMTSMAFVLGIVPLVIATGAGAAARRSMGTGVFGGMLLATFVA 1009

Query: 812  SIFIAAPILLFIYDWRAKNAR 832
            +IFI  P+       +  + +
Sbjct: 1010 TIFI--PLFFTWLSNKNVHRK 1028



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 5/141 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L  +  + + +  T     +FG   N   + A++  IG  V+D +VV + +    
Sbjct: 362 SFRATLIPMIAVPISLIGTFAGLWIFGFSINTLTLFAMVLSIGIVVDDAIVVLENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S      KS+ +     V   +      +P+A  G   G +   FA+ +A  +
Sbjct: 420 LMEEEKLSAIKAAVKSMEQVSAAVVAIVLVLCAVFVPVAFLGGIAGEMYKQFAVTVAVAV 479

Query: 806 VVAASSSIFIAAPILLFIYDW 826
           V++   ++ +   +   +   
Sbjct: 480 VISGIVALTLTPALCAILLKK 500


>gi|297380715|gb|ADI35602.1| protein-export membrane protein SecD [Helicobacter pylori v225d]
          Length = 525

 Score =  169 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNARLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPV 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|238897144|ref|YP_002921892.1| acridine efflux pump [Klebsiella pneumoniae NTUH-K2044]
 gi|238549474|dbj|BAH65825.1| acridine efflux pump [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 1005

 Score =  169 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/659 (10%), Positives = 178/659 (27%), Gaps = 42/659 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKEGI-- 86
             + ++P   P               + +           L+      +   L       
Sbjct: 1   MPVGQYPDVAPPA-------------VKISATYTGASAETLENSVTQVIEQQLTGLDHLL 47

Query: 87  --GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       IT++F      +    +V   +Q   S+L  + +++ +     +   
Sbjct: 48  YFSSTSSSDGSVSITVTFEQGTDPDTAQVQVQNKVQQAESRLPSEVQQSGVTVEKSQSSF 107

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +++         + + + S  ++    D +   E              +    DP++L  
Sbjct: 108 LLILAVYDKTNRATSSDISDWLVSNMQDPLARVEGVGSLQVFGA-EYAMRVWMDPTKLAS 166

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
                + +       N        G     ++      V  +  +               
Sbjct: 167 YSLMPSDVQSAIEAQNVQVSAGKIGALPSSNAQQLTATVRAQSRL-------------QT 213

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    I   +             +            L                +   T
Sbjct: 214 PDQFKAIIVKSQADGSVVRLSDVARVEMGSEDYTATANLNGHPAAGIAVMMAPGANALDT 273

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
                   A  +            + +      S      T      LV+ V+++ +   
Sbjct: 274 ATLVKSKIAEFQRQMPQGYDIAYPKDSTEFIKISVEDVIQTLFEAIILVVCVMYLFLQNF 333

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   ++ + ++ T  +L+L G ++   ++  +VL IGL VD  I+V E +    R 
Sbjct: 334 RATLIPAVAVPVVLLGTFGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENVERIMRD 393

Query: 445 -NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISM 500
                  + +         +    +      + + FFGG      R F++T+  ++++S+
Sbjct: 394 EGLPAREATEKSMGEISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMMLSV 453

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR----ARFWGVGISILF 556
             A+++  A+   ++ + K  +                  Q        R   +  +   
Sbjct: 454 VVALTLTPALCGALLSHSKPHTKGFFGAFNRLWGRTEAGYQHRVLGGLRRGAVMMGAYAL 513

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              ++ L         +  +   ++ V    P   + VR+     Q+ D          +
Sbjct: 514 ICGAMALAMWKLPGSFLPVEDQGEIMVQYTLPAGATAVRTAEVRRQVTDWFLTKEKANTD 573

Query: 617 FLVRLQYQPGDSVAQTR--VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +  +         Q        +K         +T Q   +   K    +    +  +
Sbjct: 574 VIFTVDGFSFSGSGQNAGMAFVSLKNWSQRKGDDNTAQAIALRATKELGTIRDATLFAM 632



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 92/248 (37%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +    +          +  +     +++    +++    +    +P 
Sbjct: 231 VRLSDVARVEMGSEDYTATANLNGHPAAGIAVMMAPGANALDTATLVKSKIAEFQRQMPQ 290

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +  +  +   I  +  + I ++  +++  + +   L     + + +  T
Sbjct: 291 GYDIAYPKDSTEFIKISVEDVIQTLFEAIILVVCVMYLFLQNFRATLIPAVAVPVVLLGT 350

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G  ALFG   N   + A++  IG  V+D +VV + +     +    +  R+  +KS+ E
Sbjct: 351 FGVLALFGYSINTLTLFAMVLAIGLLVDDAIVVVENV--ERIMRDEGLPAREATEKSMGE 408

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LPMA +GGS       F++ +   ++++   ++ +   +   + 
Sbjct: 409 ISGALVAIALVLSAVFLPMAFFGGSTGVIYRQFSVTIISAMMLSVVVALTLTPALCGALL 468

Query: 825 DWRAKNAR 832
                + +
Sbjct: 469 SHSKPHTK 476



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 76/252 (30%), Gaps = 9/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +               Q G  S   ++G   F ++ +   G S              
Sbjct: 756  VRGSDNSMTPFSAFATTHWQYGPESLVRYNGSAAFEIQGENAAGFSSGAAMDKMEKLADS 815

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                         +     S + +    + +++  + +     +   W      I  + L
Sbjct: 816  LPAGSTWAWSGISLQEKLASGQAMSLYAISILVVFLCLA---ALYESWSVPFSVIMVIPL 872

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        L G+  ++    A+LT IG S  + +++ +   +         S      
Sbjct: 873  GLLGAALAATLRGLSNDVYFQVALLTTIGLSSKNAILIVE-FAE--SAVDEGYSLSRAAI 929

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   V TS+A    VLP+A+    G +   +    +  G + A   ++F     
Sbjct: 930  RAAQTRLRPIVMTSLAFIAGVLPLAIATGAGANSRVAIGTGIIGGTLTATLLAVFFVPLF 989

Query: 820  LLFIYDWRAKNA 831
             + +     +  
Sbjct: 990  FVLVKRLFTRQR 1001


>gi|260773279|ref|ZP_05882195.1| RND multidrug efflux transporter [Vibrio metschnikovii CIP 69.14]
 gi|260612418|gb|EEX37621.1| RND multidrug efflux transporter [Vibrio metschnikovii CIP 69.14]
          Length = 1036

 Score =  169 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/651 (9%), Positives = 174/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+L  ++C  GL+        +  +   P                         
Sbjct: 9   KRPVAAVVLSLLLCVFGLVS-----FSKLSVREMPDIESPVV---------SISTRYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEISSTTRNGMSRITVTFKLGYDLNEGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +  +     + V    +         + +  I R  +D+  +     
Sbjct: 115 AKRSLPEQADDPQVFKSNGSGEASVYINLSSS--TMDRTQLTDYIDRVLVDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +    +P ++     TT  ++      N    G                
Sbjct: 173 SVDISGGLYKVMYVRLNPEQMAGRGITTTDITNALRRENIESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARSYQSEEDFQSLVIKQASDNTPIYLRDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +              ++          ++  +      S   
Sbjct: 274 KSDGVVNVSMGIIPQSDANPLEVAARIHQEVDRVQPFLPEGTRLAIDYDSTVFIERSIEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +L      G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVVLVLYIFIGQARATLIPAVTVPVSLISSLIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVMENIYHHIEQGEKPLLAAYKGAQEVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIPD 536
           G        F++ + +S++ S   A+++   +   I+R     +    +       L  +
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLSSKILRANVKPNRFNRMVDKLFARLEAN 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                 +  R       ++ +           +   +       +     R  D +    
Sbjct: 514 YRRALQLALRAKWAAPLVIIACVGGSYALNQQVPAQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVESRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILDDWNE 624



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 90/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L +          +R   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARSYQSEEDFQSLVIKQASDNTPIYLRDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V   + +++  + P         +    +  + R        +
Sbjct: 279 VNVSMGIIPQSDANPLEVAARIHQEVDRVQPFLPEGTRLAIDYDSTVFIERSIEEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +L     FG   NL  + A++  IG
Sbjct: 339 FITGGLVVLVLYIFI-GQARATLIPAVTVPVSLISSLIAAYYFGFSINLITLMALILAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVMENI---YHHIEQGEKPLLAAYKGAQEVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLSSKILRANVKPNR 498



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 6/138 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        + G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFVGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L      F   I  +    L   + T+       +P+ +    G     S    + FG+
Sbjct: 931  QLRDRGYEFEKAIIDASARRLRPILMTAFTTLAGAIPLILSTGAGYESRVSVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFI 823
              A+  ++F+   +   I
Sbjct: 991  AFASLVTLFVIPAMYRLI 1008


>gi|73748183|ref|YP_307422.1| preprotein translocase subunit SecF [Dehalococcoides sp. CBDB1]
 gi|73659899|emb|CAI82506.1| protein-export membrane protein SecF [Dehalococcoides sp. CBDB1]
          Length = 301

 Score =  169 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 17/290 (5%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R   + IS L  +  +  L   GL  GI+F  G  L V  ++ V +  +   L SL   
Sbjct: 7   HRPLFIFISALIILAGLASLLIFGLKPGIEFSSGSMLTVKFDQTVSIDELTQELRSLGQN 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           +   Q             Y    S         ++  + E     T +  E V P I+R+
Sbjct: 67  EAIVQVTGDGD-------YLIRTSQLDVSQKISLETSLEETFGNLTERGFENVDPMIARQ 119

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGFFAL----FG 715
             +  ++ +  + + +L+Y+   F+     +++   A+  L  D    LG FAL    FG
Sbjct: 120 TTQMALIAIGAALVGILLYVTWAFRRMPKPFHYGTCAVIALFHDALVVLGIFALLAGIFG 179

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E NL  +  ++ +IGYS+N+ VVV+DR+R+N        SF  ++++SI ET+ RS+ +
Sbjct: 180 WEINLMFIIGIMAVIGYSINNTVVVFDRIRENQLKGIH-PSFEVVVNQSIMETIVRSINS 238

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           S    I+V+ + ++ G+ I + +I M  G++     S+F+A  +L+   +
Sbjct: 239 SFTVIITVVALMLFLGASIQNLSIVMLIGLIAGTYDSLFVAPSLLVTWEN 288


>gi|170739645|ref|YP_001768300.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium sp. 4-46]
 gi|168193919|gb|ACA15866.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium sp. 4-46]
          Length = 1063

 Score =  169 bits (426), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/544 (10%), Positives = 149/544 (27%), Gaps = 31/544 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL  L        +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLIFIAGLLSLL-----AMPISEYPDVVPPSVV---------VRATFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVATPIEEQINGVEGMLYMSSQATTDGIMTLTVTFRLGTDPDKAQQLVQNRVAQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  +VT        ++                   +    D++   +   
Sbjct: 116 AEPRLPAVVRQLGIVTVKSSPDLTMVVHLLSPDGRYDMTYLRNYAVLNIRDRLARLDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   +   +       N      + G          Q 
Sbjct: 176 QVQLFGSGDYAMRIWLDPQKVAEHGLSAGDVVREIQAQNVEAAAGVIGASPAVPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +                 I    A      
Sbjct: 236 SLNAQGRLTSEE-------------QFGDIVVKTGPDGEITRLRDLARIELGAADYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          S     +     +      A ++          +          S   
Sbjct: 283 LLDNKSAVAIPISQSPGSNAIRISDEVRRTMAEIKTTMPEGVDYRIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T A++   G ++   S+ G+V
Sbjct: 343 VIHTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSIVGTFAVMHAFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGLAPREASHRAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++        +  +    L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAVNSLTLSPALSALLLKDHGAPKDRLTRILDGLLGWFFR 522

Query: 539 AIQF 542
               
Sbjct: 523 RFNR 526



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFAVMHAFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI- 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
              + ++ R+   +++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 424 --ESGLAPREASHRAMREVSGPII-AIALVLVAVFVPLAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAVNSL 488



 Score = 44.7 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 6/105 (5%)

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ L+G S  + +++ +  R+   L     S R    ++    L   + TSMA  + V
Sbjct: 937  IGLIVLVGLSAKNAILIVEFARE---LELAGRSPRRAAIEASRLRLRPILMTSMAFIMGV 993

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            LP+      G  +  +  + +  G++   +  +F+     + +  
Sbjct: 994  LPLVTATGAGSEMRSAMGVAVFSGMIGVTAFGLFLTPVFYVLLRG 1038


>gi|300088552|ref|YP_003759074.1| protein-export membrane protein SecF [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528285|gb|ADJ26753.1| protein-export membrane protein SecF [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 300

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 90/301 (29%), Positives = 141/301 (46%), Gaps = 17/301 (5%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
             +  R   + IS      S+  L   GL  GIDF  G  L V  + P  LS +   L S
Sbjct: 3   NIIGKRRLFISISGGLIALSLIFLAVFGLRSGIDFSAGSMLTVAFDNPPQLSELNQELNS 62

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           L       Q    E        +              ++  +T      T ++ E V P 
Sbjct: 63  LGYSSAIVQETGSED-------FMIRLPAITDAEKNSLEDGLTTAFGGVTERSFESVDPV 115

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGFFAL-- 713
           I+ +  R   + V  +A+ +L+Y+   F+      ++   A+  ++ D+   LG FAL  
Sbjct: 116 IAAQTSRIAGIAVAAAAVGILLYLTYAFRRMPKPLHYGAVAVAAVLHDVLVVLGIFALLA 175

Query: 714 --FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             FG E NL  +  +L +IGYSVN+ VVV+DR+R+N KL  T+  F  ++++S+ ETL R
Sbjct: 176 AVFGWEINLMFIIGILAVIGYSVNNTVVVFDRIREN-KLRATAPDFEGVVNRSVTETLVR 234

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           SV TS+   I VL + ++ G+ I + A+ M  GI+V   SS+F+A   L+    +  K  
Sbjct: 235 SVNTSLTTIIVVLALMLFVGATIQNLAVVMLIGILVGTYSSVFVAPAALVIWDHFDRKRL 294

Query: 832 R 832
           R
Sbjct: 295 R 295


>gi|119713220|gb|ABL97287.1| protein-export membrane protein SecF [uncultured marine bacterium
           HF10_05C07]
          Length = 300

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 93/287 (32%), Positives = 160/287 (55%), Gaps = 8/287 (2%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL-SVVRS 596
           + IQFMR R   + IS    I S+  L    L  G+DF GG+ L +  N  ++    +R+
Sbjct: 1   MNIQFMRFRKVALMISGALLITSVISLTFKNLELGLDFTGGVLLEIKLNENLESLEEIRT 60

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L   +I D        + + ++++  Q     ++      + K +        ++  E 
Sbjct: 61  LLTEKKIEDFILNFSGSQNDVIIKIPGQIESESSE------LLKSVLRENFEFDLRKEEF 114

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           +GP+I  EL  +G +G++++   M IYI  RF++ FA+GAI  L+ D+   LG F+LF I
Sbjct: 115 IGPQIGEELRDQGGLGLLLALAIMTIYIMFRFQYKFAIGAIFALVHDVLIVLGLFSLFSI 174

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           +F+LT +AAVL +IGYS+ND +VV DR+R+N +    S +   LID+S+N+ LGR++ TS
Sbjct: 175 DFDLTVLAAVLAVIGYSLNDTIVVSDRIRENFRKKRRSETIP-LIDRSLNQMLGRTLITS 233

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +   + +L + ++GG  I +F+I +  G++    SSI++    L+ +
Sbjct: 234 LTTLLVLLALLIFGGDAIQNFSIALIIGVIAGTYSSIYVVCNTLISL 280


>gi|188576081|ref|YP_001913010.1| AcrB protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520533|gb|ACD58478.1| AcrB protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1056

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/613 (10%), Positives = 157/613 (25%), Gaps = 48/613 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I   G++  L        ++ +P+  P               + +  +  
Sbjct: 9   PVFAWVVAILISLAGVISIL-----NLGIESYPTIAPP-------------QVTVTANFP 50

Query: 64  DFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +   +  +   L            S    +  ITL+F      +    +V   
Sbjct: 51  GASADTAEKEVTQVIEQQLTGIDHLLYFNSSSAANGRVTITLTFETGTDADIAQVQVQNK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  +V        ++++    D    +    +  +  + ++QI    
Sbjct: 111 VSLAAPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSINRDALNDIVGSRLLEQISRVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P +L+    +  ++       N        G     +   
Sbjct: 171 GVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFASGSVGADPTPEGIS 229

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V  +   S                +    I   +             +    +   
Sbjct: 230 FTATVSAEGRFS-------------SPEQFENIILRTDNNGATVRLKDVARVTVGPSSYG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     +        L+              +      S
Sbjct: 277 FDTQYNGKPTGAFGIQLLPGANALNVSDAVSAKLDELQPTFPQGVTWFAPYESTTFVRIS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   ++ 
Sbjct: 337 IEEVIHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYVIGFTINQLTLF 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
            +VL IG+ VD  I+V E +     +      +         + A   I        I +
Sbjct: 397 AMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVFIPS 456

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
            +     G   + FA+T+ +S+  S F A+S   A+            +    ++ D   
Sbjct: 457 SLQPGASGAIYKQFALTIAMSMGFSAFLALSFTPALCGAFLKSTHSTKKNWVYRTFDKYY 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R+  W +    L  +C        G     + +G     V    
Sbjct: 517 DKLAHRYVGVVGHTLKRSPPWMIAFVALMVLCGFLFTRMPGSFLPDEDQGFAVAIVQLPP 576

Query: 588 PVDLSVVRSNLES 600
                        
Sbjct: 577 GATKIRTNEAFAQ 589



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 57/145 (39%), Gaps = 7/145 (4%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 889  ALYESWSIPVAVLMVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 948

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         S R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 949  VEQRAA---GKSLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANARHSIGTGV 1005

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW 826
              G+V A    + I  P+   +   
Sbjct: 1006 IGGMVFATVLGL-IFIPLFFVVVRR 1029



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 FRATVIPTLVIPVALLGTFFGMYVIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 420 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 477

Query: 805 IVVAASSSIFIAAPI 819
           +  +A  ++     +
Sbjct: 478 MGFSAFLALSFTPAL 492



 Score = 42.0 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 49/527 (9%), Positives = 129/527 (24%), Gaps = 52/527 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R+ PW++   +++   G L        +      P              +G +  ++++ 
Sbjct: 533  RSPPWMIAFVALMVLCGFL------FTRMPGSFLPDED-----------QGFAVAIVQL- 574

Query: 62   EDDFVNGFLQMYSDELRS------------FLKKEGIGVFSMRQIQNKITLSFADSRFKE 109
                          ++R+             +                I L   D R   
Sbjct: 575  PPGATKIRTNEAFAQMRAVLEKQPAVEGLLQIAGFSFLGSGENVGMGFIRLKPWDERDVT 634

Query: 110  NIA--DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
                  ++      +            +    +     +  Q+         I     ++
Sbjct: 635  AGQLIQQLNGAFHSIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALINARNIVL 694

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             +  ++             +   +QL  ++  ++   L  +    S   +L       + 
Sbjct: 695  GKAAEKQDTLVGVRPNGLENAPQLQLHVDRVQAQSMGLNVSDIYSSIQLMLAPVYVNDYF 754

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
               R  R +           E          +  +  T       +  +        V +
Sbjct: 755  AEGRIKRVNMRADDQFRAGPE----------SLRNFFTPSTTATGTDGQPAMIPLSNVVK 804

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                     +      +A  I      G++       +E           G     ++  
Sbjct: 805  AEWNYASPALNRYNGYSAVNIVGNPAPGRSSGQAMSAMEEIVNNDLPPGFGFDWSGMSYQ 864

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
            E     A     ++      +    +              +     + + V+  +    L
Sbjct: 865  EIIAGNAATLLLALSVVVVFLCLAAL-------YESWSIPVAVLMVVPIGVLGAITFSML 917

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G    L    G++  IGLA  + IL+ E   E+    +S+  +        +  I  ++
Sbjct: 918  RGLPNDLYFKIGMITVIGLAAKNAILIVEFAVEQRAAGKSLREATLEAAHLRFRPILMTS 977

Query: 468  ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               ++  + L      G  A       +   ++ +    +  +    
Sbjct: 978  FAFILGVLPLAISTGAGANARHSIGTGVIGGMVFATVLGLIFIPLFF 1024


>gi|85714412|ref|ZP_01045400.1| hydrophobe/amphiphile efflux-1 [Nitrobacter sp. Nb-311A]
 gi|85698859|gb|EAQ36728.1| hydrophobe/amphiphile efflux-1 [Nitrobacter sp. Nb-311A]
          Length = 1054

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/684 (11%), Positives = 181/684 (26%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC IG++       P   + ++P   P +              V     
Sbjct: 8   RPIFAWVVALFICLIGVISI-----PFLGIAQYPIIAPPSI---------SVATVYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  +          +     Q +IT  F         +  V   ++ 
Sbjct: 54  PENLYNSVTRLIEEQLNGASGILNFESTSDSLGQVEITAFFVPGTSTALASVDVQNRIKR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L     K  ++        + +            +     + R  I +I       
Sbjct: 114 IEARLPAAVLKEGILVQEASSAVLQIITLRSTDGSLDEVGLGDFMTRNIIGEIRRIPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP +L     T+  ++      N        G    R       
Sbjct: 174 RATLF-STERSLRVWLDPEKLVGYDLTSEDVTKAIAAQNAQVASGSIGGPPSRAGQKTAA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           LV  K +++                +    +                 +           
Sbjct: 233 LVLVKGQLT-------------TPEEFGSILLRANRDGSTVRLRDVARVEVGGMDYRFTT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T          L           +          S   
Sbjct: 280 RLNGKPTAGLSVLLAPGANALATASAVEAKMKELSKFFPANIAYSIPYDITPVVEASIEK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   ++ ++    + + ++ T A+L + G ++ + ++ G+V
Sbjct: 340 VVHTLIEAVVLVFLVMFLFLQNIRYTIIPTVVVPVALLGTCAVLLIAGYSINMLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +     S+  S I    +  +   V + FF
Sbjct: 400 LAIGILVDDAIVVVENVERIMAEEGLPPREAARKAMSQITSAIVGITLVLMAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLS 529
            G      R F++T+  +I  S   A+S+  A+   +           +K      N   
Sbjct: 460 PGSVGIIYRQFSVTVVAAIGFSALMALSLTPALCATLLKPAEAGHAHARKGLFGWFNRAL 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                     + +   R   + +     + ++   F       +       +      P 
Sbjct: 520 EGVRGRYVSTVGWSLRRTGRLMLIYAVLVGALVWAFVRLPAGFLPVDDQGFITTDVQTPA 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D S  R+      +     Q    +    +      G  +   +    +K         S
Sbjct: 580 DSSHGRTEAAVEAVERYLAQRPGIQDVTFLTGFAFSGQGMNTAQAFITLKDWSERPEKDS 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
                      ++  L    I  +
Sbjct: 640 AANIVADANRDLALSLRDAKITAL 663



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 90/246 (36%), Gaps = 6/246 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V            + +        L  L     +++A    +E   K+++
Sbjct: 255 RDGSTVRLRDVARVEVGGMDYRFTTRLNGKPTAGLSVLLAPGANALATASAVEAKMKELS 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P +   +       +    I K +  +I + + + + +++  +   + +     + +
Sbjct: 315 KFFPANIAYSIPYDITPVVEASIEKVVHTLIEAVVLVFLVMFLFLQNIRYTIIPTVVVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     + G   N+  +  ++  IG  V+D +VV + +     +    +  R+   
Sbjct: 375 ALLGTCAVLLIAGYSINMLTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPREAAR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++++     V  ++      +PMA + GSV      F++ +   I  +A  ++ +   +
Sbjct: 433 KAMSQITSAIVGITLVLMAVFVPMAFFPGSVGIIYRQFSVTVVAAIGFSALMALSLTPAL 492

Query: 820 LLFIYD 825
              +  
Sbjct: 493 CATLLK 498



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 70/195 (35%), Gaps = 8/195 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G  +  +L   +    + +SA+ + + +   ++ W   
Sbjct: 835  DAIAEMERLADRLPRGFGYEWTGQSLQEKLSGSQAPFLLALSALVVFLCLAALYESWTIP 894

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  + T+ L I   +      G+  ++     ++T+IG +  D +++ +  +    L   
Sbjct: 895  LAVLLTVPLGICGAVLAATGRGLANDVYFTVGLVTIIGLAAKDAILIVEFAKD---LRAQ 951

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                 D   ++        + T  A    VLPM V    GG+   +    +  G++    
Sbjct: 952  GKPLVDATMEACALRFRPILMTGFAFASGVLPMVVASGAGGASQQALGTSVMGGMIAVVV 1011

Query: 811  SSIFIAAPILLFIYD 825
             ++ +     + +  
Sbjct: 1012 LALLMVPVFYVVVMR 1026


>gi|182419628|ref|ZP_02950873.1| acriflavin resistance protein [Clostridium butyricum 5521]
 gi|237665907|ref|ZP_04525895.1| acriflavin resistance protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376518|gb|EDT74095.1| acriflavin resistance protein [Clostridium butyricum 5521]
 gi|237658854|gb|EEP56406.1| acriflavin resistance protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 1033

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/678 (9%), Positives = 182/678 (26%), Gaps = 58/678 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +++++   +  +G +      L        P                   +     
Sbjct: 9   KRPVFIIVIMITLTILGFVSYKSLALNDMPDADLPYVS--------------VMITENGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++    +        ++    ++ T+ F         A +V   + G
Sbjct: 55  TPEEIETKITKEVEDAVQQISGVQSLTSTINSGYSQTTIEFDLGIDPSTAAQEVRDKISG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    ++        +IV            A   S  +     +++       
Sbjct: 115 IRGNLPTDINDPIVSKFDMSASAIVSIAVYGTDDNQKA---SDFVDNTLKNKLYSVSGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++  + D  ++ +   T + +       N  +            S     
Sbjct: 172 SINVSGEDTREIHIKLDNDKMLKYGLTASAVLNSIKTDNTDQSSGKVSDGNNEISITTTS 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +   I +                      +            +   +       
Sbjct: 232 KIQKIEDFKNIVIE--------------------NVKGTEVRVKDVATVEDGVEERTSQA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     +    +   ++          +   N  +   +   
Sbjct: 272 YYNGNKAIGIDVVKQSGSNTVEVAKGVKNVVEEVKHSLPEGLSIDIVSDNSQSIEDTVDD 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      L +I++F+ +   +  +++ FS+ ++VI T   L L+  TL   S+  + 
Sbjct: 332 VMKTIYEGCILAVIIVFLFLHEWESTIISAFSLLISVITTFICLKLMHFTLNTMSLMSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL +D  I+V E I       +  F +     S     +  +    +   + L    
Sbjct: 392 LAVGLLIDDAIVVIENIIRHLHMGKRPFEAARDATSEIGFAVIATTSAVIAVFLPLAMIS 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------IDINPL 528
           G   +    FA+T+  S+ +S+F + ++V  M   +++    +            D    
Sbjct: 452 GMIGKYFIEFALTIVFSMAVSLFVSFTLVPMMASKMLKISDGRKSTIIGRAFVVFDKKFE 511

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +     +     +    +F    + +            KG I +    +  
Sbjct: 512 YVSQKYSHLLKFLLNKRVIVLIVCGAMFFSSLLLIKSLGFNMLPTTDKGIINVKADFDSG 571

Query: 589 VDLSVVRSNLESLQI--------GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + L       + ++           +     +   +  + L  +         + + +  
Sbjct: 572 ITLDKAIEKTKKIEECIDKYPEVKYMYSTVENSSASVSITLVDKKERKDTSKVIAQKISD 631

Query: 641 KITEIVPLSTIQNTEIVG 658
            +  +  +    +   +G
Sbjct: 632 DLKSLSGMEVYASASSMG 649



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 87/250 (34%), Gaps = 13/250 (5%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG--EKNFLVRLQYQPGDSVAQTRVLEMVK 639
            V       +        S    + +        +++    ++   G       V   + 
Sbjct: 251 EVRVKDVATVEDGVEERTSQAYYNGNKAIGIDVVKQSGSNTVEVAKGVKNVVEEVKHSLP 310

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           + ++  +     Q+ E     + + +    I+ VII             +W   + +  +
Sbjct: 311 EGLSIDIVSDNSQSIEDTVDDVMKTIYEGCILAVIIVF-------LFLHEWESTIISAFS 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L++ +  T     L     N  ++ ++   +G  ++D +VV + +   ++         +
Sbjct: 364 LLISVITTFICLKLMHFTLNTMSLMSLSLAVGLLIDDAIVVIENI---IRHLHMGKRPFE 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               + +E     + T+ A     LP+A+  G +   F I  A  IV + + S+F++  +
Sbjct: 421 AARDATSEIGFAVIATTSAVIAVFLPLAMISGMIGKYF-IEFALTIVFSMAVSLFVSFTL 479

Query: 820 LLFIYDWRAK 829
           +  +     K
Sbjct: 480 VPMMASKMLK 489



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/203 (12%), Positives = 80/203 (39%), Gaps = 8/203 (3%)

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-A 693
                  KI   +P     +   +   + + L   G+  ++ S + + + +  +F+     
Sbjct: 813  QTEYLNKIKSELPDGVSLSVGGMNGTMQKSLSSFGLCALL-SIVFLYLVMAAQFESLVEP 871

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            +  +  L L +   +    +   E ++ A+  ++ L+G    + +++ D  ++       
Sbjct: 872  MAVMFALPLAMIGAIIALFICRSELSIMALIGIVMLMGLVAKNGILLIDAAKE---RMEN 928

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++  + + ++    L   + T++A  + +LP AV    G  +    A  +  G++ +  
Sbjct: 929  GMNRNEALVEAGFVRLRPIIMTTLAMILGMLPTAVATGTGTEMRKPMAEAVIGGLITSTI 988

Query: 811  SSIFIAAPILLFIYDWRAKNARI 833
             ++F+       +   + +  ++
Sbjct: 989  LTLFVVPIAYTLLDGLKKRILKM 1011


>gi|329897307|ref|ZP_08272025.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [gamma proteobacterium IMCC3088]
 gi|328921238|gb|EGG28637.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [gamma proteobacterium IMCC3088]
          Length = 1036

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/512 (12%), Positives = 153/512 (29%), Gaps = 38/512 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + ++L +++   G+L        +  L  +P                         
Sbjct: 9   KRPVFALVLSALLVAFGVLS-----FDRLPLREYPDIESPIV---------SVSTNYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + L+   +   S    ++ I L F  SR  +N A+ V   +  
Sbjct: 55  SAAVVENRITEVIEDRLAGLQGIKVMESSSFDGRSSIRLEFQLSRDIDNAANDVRDRISS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + +  + +   +      E  +        +     +E +    R   D+  + +   
Sbjct: 115 VLNNIPQEAEPPEVRKEESGEDVVFWVHLVGPE--MTQLELTDYARRYLEDRFSVLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S   +  +    DP  L     T + +       N                   + 
Sbjct: 173 RVRISGGKIYAMRIWLDPQELVARQLTVSDVENALRTQNIELPAGTLNSLSKDFILRIE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 +    A      
Sbjct: 232 ------------------RSYLTEDDFRALVIRRSDDGYLVRLGDVARVELGSAEDRRFF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       ++  +              +          I    +      + S 
Sbjct: 274 RGNGEPMVGLGIVKQSTANALSISRLVQAEIERVNQDLPQGLTLIASYDDSVFVEEAISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  + A LV+ V+F+ +   +  L+   ++ +++I + + L +LG ++ L ++  +V
Sbjct: 334 VYFTLLVAAALVVFVIFIFLGDWRSLLIPALTVPISLIASFSALLVLGYSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD +I+V E I       +S   +  +G  +    +  + +  +   V + F  
Sbjct: 394 LAIGLVVDDSIVVLENIHRRLTSGESPLVASFLGARQVGFAVVATTLVLVAVFVPITFLE 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAM 510
           G   R    FA+TM +++  S F A+++   +
Sbjct: 454 GDIGRLFSEFAVTMAIAVGFSSFVALTLAPVI 485



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 79/231 (34%), Gaps = 6/231 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L S +       N +      +  Q           V   +++   ++    T+
Sbjct: 258 DVARVELGSAEDRRFFRGNGEPMVGLGIVKQSTANALSISRLVQAEIERVNQDLPQGLTL 317

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             +      +   +       ++ +A+ + +       W   L    T+ + +  +    
Sbjct: 318 IASYDDSVFVEEAISEVYFTLLVAAALVVFVIFIFLGDWRSLLIPALTVPISLIASFSAL 377

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D +VV + +    +  T+  S          +    
Sbjct: 378 LVLGYSINLLTLLALVLAIGLVVDDSIVVLENIH---RRLTSGESPLVASFLGARQVGFA 434

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
            V T++      +P+    G +      FA+ MA  +  ++  ++ +A  I
Sbjct: 435 VVATTLVLVAVFVPITFLEGDIGRLFSEFAVTMAIAVGFSSFVALTLAPVI 485



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 62/147 (42%), Gaps = 7/147 (4%)

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ + + + +  +F+ +      + T+ L +    G   LF    N+ +   ++ L+G +
Sbjct: 861  LALLIVYLVMAAQFESFLHPAVILLTVPLALIGGFGGLVLFDQTLNIYSQVGMVMLVGLA 920

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ + +    +L    ++F + +    +  L   + T++   I  +P+ +    G
Sbjct: 921  TKNGILLVEFIN---QLRDEGLAFEEAVLGGASRRLRPIIMTALTTVIGAIPLILSNGPG 977

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                    + +  G+ VA   ++++  
Sbjct: 978  HESRTVIGVVIMCGVSVATVITLYVIP 1004


>gi|307546328|ref|YP_003898807.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Halomonas
           elongata DSM 2581]
 gi|307218352|emb|CBV43622.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Halomonas elongata DSM 2581]
          Length = 1052

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 151/547 (27%), Gaps = 36/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G++       P   +  +P  +P + +                  
Sbjct: 10  RPIFAAVLSILIFVAGVITI-----PLMPVSEYPDVVPPSVV---------VRTAYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      ++ A KV   +
Sbjct: 56  PKVIAETVATPLEESINGV--EDMMYLKSVAGSDGVLQMTVTFRPGTDPDDAAVKVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +    +++            +           D +   + 
Sbjct: 114 SQALARLPEDVRRQGVTTQKQSPTFLMVVHLTSPDGRYDTLYLRNYARLHVKDALARLQG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +          +    DP ++     T + +       N        G   + DSD  
Sbjct: 174 VGEAQIFGGGDYAMRAWLDPDKVAARGLTASDVVQAIREQNVQVSAGQLGAEPMPDSDFL 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             +       +                +    +                 +         
Sbjct: 234 TLINARGRLAT--------------EQEFGDIVLKSSADGEIVRLADVARLELGAGDYTL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     E        L                      S 
Sbjct: 280 RSQLDGKDAVAIGVFQAPGANALEIQEQVIDTMDELSQWFPEGVEYEAVYDTTIFVRDSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T A+L LLG ++   ++ G
Sbjct: 340 KSVIKTLLEAVLLVVLVVTLFLQTWRASIIPLIAVPVSVVGTFAVLYLLGFSINTLTLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      V + F
Sbjct: 400 LVLAIGIVVDDAIVVVENVERNIGEGLAPLAAAHQAMREVSGPIIAIGLVLCAVFVPMAF 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R FA T+ +S +IS   ++++  A+   +++        +  L    L   
Sbjct: 460 LSGVTGQFYRQFAATIAISTVISTINSLTLSPALAAMLLKPHDAPKDRLTRLIDLLLGWV 519

Query: 537 CIAIQFM 543
                  
Sbjct: 520 FRPFNRF 526



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 80/250 (32%), Gaps = 11/250 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V +  +    ++     +   N     +       +   S      LE +  K+    
Sbjct: 800  EMVPIGSMVRIDQTFGPDPVLRYNGYPAADLAGEADPRVLSSTQAMEALEELAAKVLPNG 859

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                  +                +V   +S + + + +   ++ W   L  I  + + + 
Sbjct: 860  MDIEWTDLSYQQATQGN----AALVVFPLSVMLVFLALAALYESWTLPLAVILIVPMCML 915

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L        + N+     ++ LIG +  + +++ +  R+   L        +   ++ 
Sbjct: 916  SALLGVWFMKGDNNIFVQVGLVVLIGLACKNAILIVEFARE---LERQGRGIVEAALEAC 972

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS+    +V+P+ +    G  V  +  + +  G++      +F+     + 
Sbjct: 973  RLRLRPIIMTSITFTAAVVPLMLASGAGAEVRQALGVAVFAGMLGVTLFGLFLTPVFYVA 1032

Query: 823  IYDWRAKNAR 832
            +     ++ R
Sbjct: 1033 LRKLVTRSER 1042



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 364 WRASIIPLIAVPVSVVGTFAVLYLLGFSINTLTLFGLVLAIGIVVDDAIVVVENVERNIG 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAVWG--GSVIGSFAIPMAFGI 805
                ++      +++ E  G  +   +   A    +   + G  G     FA  +A   
Sbjct: 424 E---GLAPLAAAHQAMREVSGPIIAIGLVLCAVFVPMA-FLSGVTGQFYRQFAATIAIST 479

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++  +S+ ++  +   +  
Sbjct: 480 VISTINSLTLSPALAAMLLK 499


>gi|261253683|ref|ZP_05946256.1| RND multidrug efflux transporter [Vibrio orientalis CIP 102891]
 gi|260937074|gb|EEX93063.1| RND multidrug efflux transporter [Vibrio orientalis CIP 102891]
          Length = 1040

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/651 (9%), Positives = 178/651 (27%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+L  ++C  G++        +  +   P                      E  
Sbjct: 9   KRPVAAVVLSLLLCVFGIVS-----FNKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSNLEDQLSGISGIDEISSTTRNGMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +  + R  +D+  +     
Sbjct: 115 AQRSLPDEADDPIVFKNNGSGEASLYINLSSSE--MDRTQLTDYVDRVLMDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     TT+ ++      N    G                
Sbjct: 173 SVDVSGGLYKVMYVKLKPEQMAGRGVTTSDITSALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V    I ++  TA    +       +          +     ++           
Sbjct: 219 -----VRNDQIVMSVRTARSYNQAEDFEYLVVKRASDNTPIYLRDVADVYIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +              ++          ++  +      S + 
Sbjct: 274 KSDGVVNVSMGIVPQSDANPLEVATLVHKQVEDIQQFLPDGTRLAIDYDSTVFIERSIAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ ++++ +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVVLVLYIFIGQVRATLIPAVTVPVSLVSSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + +S++ S   A+++   +   +++     S            L   
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSKLLKANVKPSRFNLFIDRMFGRLESA 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     ++      I+ S           +   +       +     R  D +    
Sbjct: 514 YRKLLKGALKWKWAAPLIIMSCIGGSWGLMQQVPAQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MSANMDIVEERLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILDDWND 624



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          +R   +     +     F  +  
Sbjct: 219 VRNDQIVMSVRTARSYNQAEDFEYLVVKRASDNTPIYLRDVADVYIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V  +V K++ +I           +    +  + R        +
Sbjct: 279 VNVSMGIVPQSDANPLEVATLVHKQVEDIQQFLPDGTRLAIDYDSTVFIERSIAEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVVLVLYIFI-GQVRATLIPAVTVPVSLVSSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K +R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSKLLKANVKPSR 498



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        L     N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLFLMNQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    I F   I  +    L   + T+       +P+ +    G     +    + FG+
Sbjct: 931  QLRDRGIEFEKAIVDASARRLRPIMMTAFTTLAGAIPLIMSTGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFI 823
              A   ++F+   +   I
Sbjct: 991  GFATLVTLFVIPAMYRLI 1008


>gi|147668958|ref|YP_001213776.1| preprotein translocase subunit SecF [Dehalococcoides sp. BAV1]
 gi|289432233|ref|YP_003462106.1| protein-export membrane protein SecF [Dehalococcoides sp. GT]
 gi|146269906|gb|ABQ16898.1| protein translocase subunit secF [Dehalococcoides sp. BAV1]
 gi|288945953|gb|ADC73650.1| protein-export membrane protein SecF [Dehalococcoides sp. GT]
          Length = 301

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 75/290 (25%), Positives = 135/290 (46%), Gaps = 17/290 (5%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R   + IS L  +  +  L   GL  GI+F  G  L V  ++ V +  +   L SL   
Sbjct: 7   HRPLFIFISALIILAGLASLLIFGLKPGIEFSSGSMLTVKFDQTVSIDELTQELRSLGQN 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           +   Q             Y    S         ++  + E     T +  E V P I+R+
Sbjct: 67  EAIVQVTGDGD-------YLIRTSQLDVSQKISLETSLEETFGNLTERGFENVDPMIARQ 119

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGFFAL----FG 715
             +  ++ +  + + +L+Y+   F+     +++   A+  L  D    LG FAL    FG
Sbjct: 120 TTQMALIAIGAALVGILLYVTWAFRRMPKPFHYGTCAVIALFHDALVVLGIFALLAGIFG 179

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E NL  +  ++ +IGYS+N+ VVV+DR+R+N        SF  ++++SI ET+ RS+ +
Sbjct: 180 WEINLMFIIGIMAVIGYSINNTVVVFDRIRENQLKGIH-PSFEVVVNQSIMETVVRSINS 238

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           S    I+V+ + ++ G+ I + +I M  G++     S+F+A  +L+   +
Sbjct: 239 SFTVIITVVALMLFLGASIQNLSIVMLIGLIAGTYDSLFVAPSLLVTWEN 288


>gi|329113195|emb|CBL62366.1| permease protein [Salmonella enterica subsp. enterica serovar
           Derby]
          Length = 1050

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 58/505 (11%), Positives = 135/505 (26%), Gaps = 32/505 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P +                    
Sbjct: 10  RPIFAAVLSILIFITGLIAI-----PLLPVSEYPDVVPPSVQ---------VRAEYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  E +         + +   T++F      +    +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--ENMMYMKSVAGSDGVLVTTVTFRPGTDPDQAQVQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +     ++      +    ++        +  D++     
Sbjct: 114 AQAEARLPEDVRRLGITTQKQSPTLTLVVHLFSPKGKYDSLYMRNYATLKVKDELARLPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    DP+++     T + +       N        G   L      
Sbjct: 174 VGQIQIFGSGEYAMRVWLDPNKVAARGLTASDVVTAMQEQNVQVSAGQLGAEPLPQESDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  +                 +    I                 I         
Sbjct: 234 LISINAQGRL-------------HTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYAL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +            A L                      S 
Sbjct: 281 RSQLNNKDAVGIGIFQSPGANAIDLSNAVRAKMAELATRFPEDMQWAAPYDPTVFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T ++L LLG +L   S+ G
Sbjct: 341 RAVVQTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   S           I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERNIEEGLAPLASAHQAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 FGGGAVRGFAITMGLSILISMFTAI 504
             G   + +        + ++ +AI
Sbjct: 461 LSGVTGQFYKQFAVTIAISTVISAI 485



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 55/149 (36%), Gaps = 8/149 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 900  SWTLPLAVILIVPMTMLSALFGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF-AIPMAFG 804
             L        +   ++    L   V TS+A     +P+ + G   G+ +     I +  G
Sbjct: 958  -LEIQGKGIMEAALEACRLRLRPIVMTSIAFIAGTIPL-ILGHGAGAEVRGVTGITVFSG 1015

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++      +F+     + +     +   +
Sbjct: 1016 MLGVTLFGLFLTPVFYVTLRKLVTRRKPV 1044



 Score = 44.7 bits (103), Expect = 0.064,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 89/266 (33%), Gaps = 12/266 (4%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L+  +        +    + +   +   L  +R                   
Sbjct: 226 PLPQESDFLISINAQGRLHTEEEFGNIILKTAQDGSLVRLRDVARIEMGSGSYALRSQLN 285

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +            +   V+ K+ E+      ++ +   P      +R  I  V+
Sbjct: 286 NKDAVGIGIFQSPGANAIDLSNAVRAKMAEL-ATRFPEDMQWAAPYDPTVFVRDSIRAVV 344

Query: 675 -----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                   + +L+ I     W  ++  +  + + +  T     L G   N  ++  ++  
Sbjct: 345 QTLLEAVVLVVLVVILFLQTWRASIIPLIAVPVSVVGTFSILYLLGFSLNTLSLFGLVLA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + +N++     ++      +++ E  G  +  ++      +PMA  
Sbjct: 405 IGIVVDDAIVVVENVERNIEE---GLAPLASAHQAMREVSGPIIAIALVLCAVFVPMAFL 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSS 812
            G        FA+ +A   V++A +S
Sbjct: 462 SGVTGQFYKQFAVTIAISTVISAINS 487


>gi|332162861|ref|YP_004299438.1| putative integral membrane efflux protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667091|gb|ADZ43735.1| putative integral membrane efflux protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 1041

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/531 (10%), Positives = 152/531 (28%), Gaps = 41/531 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITIVGWVS-----LHVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L + +     +         N   +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAIASPLEAQVNGVSNMLYMESTSGNNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       +    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPKQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P R+  L  +   +       N        G       
Sbjct: 169 INGVGDVQVFGARDYSMRVWLNPQRMESLNVSVQDIIAALQQQNVQAAAGQIGSSPSTPD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +S                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLS-------------DPQEFANVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A         +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLSASFPADLTYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL V+++ +   +   +   +I ++++ T A+L + G +    S
Sbjct: 336 ATLHEIALSLTLTLIVVLAVVYLFLQSMRATFIVALTIPVSLLGTFAVLYVFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +      +       +     S+    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLSNDPDLTPAQATKQAMSQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           V +       G   R FA+T+  +++ S   A+++  A+   +++ + + +
Sbjct: 456 VPIAILPGIVGELYRQFAVTLSAAVIFSSINALTLSPALCAVLLKRRTLST 506



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 82/279 (29%), Gaps = 13/279 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              ++                     + +      + V  +L +L     S          
Sbjct: 753  DFTLNNRMFRVQLQNDMDFRQRTAQINSLNVRSDNGVLVSLANLVTLTPSVGAPFISNFN 812

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                    G +       + +      +        +        +E    G V  I  A
Sbjct: 813  QFPSVAISGSAADGASSGQAMAAMEALLAQNLPQGYSYSWSGMSWQEQQTGGQVVFIYLA 872

Query: 678  IAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              +  Y+++      W   L  I +++  +   +   +  G   ++ A   ++ LIG + 
Sbjct: 873  ALVFAYLFLVAQYESWSIPLVVILSVVFAVGGAVAGLSAMGFANDVYAQIGLVLLIGLAA 932

Query: 735  NDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
             + +++  + + R+         +          +     + T+++  + V+P+    G 
Sbjct: 933  KNAILIVEFSKARRE-----EGATIAQAAQDGAKQRFRAVMMTAISFILGVMPLVFASGA 987

Query: 792  SVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              +      I +  G+++A +  I     + L I   R 
Sbjct: 988  GAMSRQIIGITVFGGMLMATAIGILFIPALYLHIQRLRE 1026



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 91/248 (36%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P                  + +  + + ++ I +L  +++             T+ +
Sbjct: 316 ASFPADLTYEINYDSTLPVTATLHEIALSLTLTLIVVLAVVYLFLQSMRATFIVALTIPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +      ++      
Sbjct: 376 SLLGTFAVLYVFGYSANTLSLFAIILALTIVVDDAIVVVENV-ERLLSNDPDLTPAQATK 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++++  G  + T++      +P+A+     G +   FA+ ++  ++ ++ +++ ++  +
Sbjct: 435 QAMSQIAGPIIATTLVLMAVFVPIAILPGIVGELYRQFAVTLSAAVIFSSINALTLSPAL 494

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 495 CAVLLKRR 502


>gi|256419412|ref|YP_003120065.1| acriflavin resistance protein [Chitinophaga pinensis DSM 2588]
 gi|256034320|gb|ACU57864.1| acriflavin resistance protein [Chitinophaga pinensis DSM 2588]
          Length = 1037

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/573 (12%), Positives = 168/573 (29%), Gaps = 38/573 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   + +++  +I   GL+           +  FP+  P                    
Sbjct: 8   LKRPVFAIVMNIIIVIFGLV-----GFNFLGVRDFPAIDPPIV---------NVRTSYAG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D +   +    ++  + +        S  Q  + IT+ F  S   E  A+ V   + 
Sbjct: 54  ANSDIIETQITEPLEKSINGIAGIKNISSSSSQGSSNITVEFELSIDLEAAANDVRDKVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  D     +V+  +     +LS   +   I + +E +       ++++      
Sbjct: 114 QALRSLPPDIDAPPVVSKEDANSDYILS-MTVQSNIRNQLEVTEYANNVLLERLQTIPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP+RL     T   +       N               +    
Sbjct: 173 SSIRILGEKKFAMRLWMDPARLSAYSLTPGDVQAALSRENVELPSGKIAGNATELTVRTF 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  + +                      ++       +                    
Sbjct: 233 GRLNTEEDFD--------------------NLIIKNDNGKVIHFRDIGQAILGPENEETI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              +   +     + +   +     +        L+          +   N      S  
Sbjct: 273 LKESGVPMIALALTPQPGSNYVAITDEFYKRYEQLKKDLPDDITTDIAIDNTKFIRKSIE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  I  GLV+I++++              I +++I    ++ + G T+ + ++  I
Sbjct: 333 EVEETLIIALGLVIIIIYLFFRDWLMAFRPLVDIPVSLIAAFFIMYVCGFTINILTLLAI 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
           VL  GL VD  I+V E I ++         +   G    +  +  ++IT     + + F 
Sbjct: 393 VLATGLVVDDGIVVTENIYKKIEAGMPRMKAAKEGSEEIFFAVIATSITLAFVFLPIVFL 452

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
             F G   R F I +  ++LIS F ++++   + + + R     S        FF   + 
Sbjct: 453 QGFVGRLFREFGIVVAGAVLISAFVSLTLTPVLNVKLGRKTHKHSWFYEKTEPFFTGMES 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
              + + A      ++ L  +  + ++     N
Sbjct: 513 GYERALEAFMKIRWMATLIVLICLAMIRIMFTN 545



 Score = 92.8 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 87/246 (35%), Gaps = 12/246 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            R   +++   +            ++ L   P        + +   K+  ++        
Sbjct: 256 FRDIGQAILGPENEETILKESGVPMIALALTPQPGSNYVAITDEFYKRYEQLKKDLPDDI 315

Query: 654 TEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           T  +    ++ + +        + + +  + ++IY++ R  W  A   +  + + +    
Sbjct: 316 TTDIAIDNTKFIRKSIEEVEETLIIALGLVIIIIYLFFR-DWLMAFRPLVDIPVSLIAAF 374

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               + G   N+  + A++   G  V+D +VV + +    K     +       +   E 
Sbjct: 375 FIMYVCGFTINILTLLAIVLATGLVVDDGIVVTENI---YKKIEAGMPRMKAAKEGSEEI 431

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               + TS+      LP+     + G +   F I +A  ++++A  S+ +   + + +  
Sbjct: 432 FFAVIATSITLAFVFLPIVFLQGFVGRLFREFGIVVAGAVLISAFVSLTLTPVLNVKLGR 491

Query: 826 WRAKNA 831
              K++
Sbjct: 492 KTHKHS 497



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 83/245 (33%), Gaps = 7/245 (2%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              + L  V +  E      I   N          L            +  +  K   + V
Sbjct: 777  EAIQLDNVVTIDEETSPPIIYHFNRYKSATVSASLAPGKTIGDGINAMYAIYDKLKQQGV 836

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                  +      +   E     +  +I++ + + + +  +F+ W      + T+ L   
Sbjct: 837  LNDNYVSALAGSSRDYAESGSNTMFALILALVLIYLVLAAQFESWVDPFIIMLTVPLAFA 896

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L    +FG  +N+ +   V+ LIG    + +++ +            +S    + ++ 
Sbjct: 897  GALLSLWIFGQTWNIFSQIGVIMLIGLVTKNGILIVEFAN---HKRDEGMSKAKAVVEAS 953

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS+A  +  LP+A+      +      I +  GI+ +   ++F+   +  F
Sbjct: 954  AMRLRPILMTSLAMALGALPIAMSLGAAATSRIPLGIVIVGGIIFSLILTLFVIPAMYTF 1013

Query: 823  IYDWR 827
            +   +
Sbjct: 1014 LSRRK 1018



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 56/529 (10%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 5    PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
             W+  L  +IC   + I   N   +           +++  L +    G+         D
Sbjct: 525  RWMATLIVLICLAMIRIMFTNLQSELAP-----IEDRSQFRLSISAPEGTSF-------D 572

Query: 65   FVNGFLQMYSDELRSFLKKEGIGVFSMRQI-------QNKITLSFADSRFKENIADKVTL 117
            ++  ++   +  +   + ++ I +                  +   +   ++    ++  
Sbjct: 573  YMETYMNRLTQFMVDSIPEKKILISVTSPGFGGGAVNSGFANVVLTEPNERQRSQKEIVN 632

Query: 118  FLQGVNSKLNVD----PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
             +     +         ++  +       + +     +I+     ++             
Sbjct: 633  MVNKNMFRFPEGKVFAIEQQTIQVGRRGGLPVSFVLQHINFDSLSSVLPKFLEEANNNPT 692

Query: 174  IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
                +  ++         +L  + + ++  +L  +   +S    L  ++ +         
Sbjct: 693  FAAIDVDLK-----FNKPELRIQINRAKASELGVSVDDISQTLQLALSNLRYG------Y 741

Query: 234  RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
               +G QY V  +V                       +I                 I + 
Sbjct: 742  FIRNGKQYQVMGQVFRGARDKPTDLQ-----------NIYVRNSRGEAIQLDNVVTIDEE 790

Query: 294  LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +  +            +      +  G+       I   + + G L          +  
Sbjct: 791  TSPPIIYHFNRYKSATVSASLAPGKTIGDGINAMYAIYDKLKQQGVLNDNYVSALAGSSR 850

Query: 354  ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                S S       +   L+ +VL           +   ++ L     L  L + G T  
Sbjct: 851  DYAESGSNTMFALILALVLIYLVLAAQFESWVDPFIIMLTVPLAFAGALLSLWIFGQTWN 910

Query: 414  LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            + S  G+++ IGL   + IL+ E    +  +  S   ++    +     I  +++   + 
Sbjct: 911  IFSQIGVIMLIGLVTKNGILIVEFANHKRDEGMSKAKAVVEASAMRLRPILMTSLAMALG 970

Query: 474  TVVLFFFGGGAVRG---FAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
             + +    G A        I +   I+ S+   + ++ AM  F+ R K 
Sbjct: 971  ALPIAMSLGAAATSRIPLGIVIVGGIIFSLILTLFVIPAMYTFLSRRKP 1019


>gi|281422480|ref|ZP_06253479.1| multidrug resistance protein, AcrB/AcrD family [Prevotella copri
           DSM 18205]
 gi|281403463|gb|EFB34143.1| multidrug resistance protein, AcrB/AcrD family [Prevotella copri
           DSM 18205]
          Length = 1088

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/573 (11%), Positives = 158/573 (27%), Gaps = 46/573 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G++      L    ++++P+  P               + +  D
Sbjct: 8   KRPVLSTVVSIFFVLLGII-----GLVSLPIEQYPNIAPPT-------------ITVNAD 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       L   +        +   +      +IT+ F      +  A  V 
Sbjct: 50  YTGADAQTVLNSVVAPLEESINGVENMTYMTSSASNSGDAEITVYFKQGSDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    S L  +  +  +  T  +  ++++     D         +   +   I Q+  
Sbjct: 110 NRVSQAQSLLPAEVTRVGVTVTKRQSSNVIMFALTTDDGRYDDQFVTNYALINVIPQLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P ++++     + +S      N       FG       
Sbjct: 170 INGVGDVQSPSARNYSMRIWLKPEKMKEFGLVPSDVSQALAEQNIEAAPGSFGE---SSD 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y +  K  +                 +    +       +         +      
Sbjct: 227 MQYEYTLRYKGRL-------------KTPMEYENILIKSNTSGQTLRLGEIAKVELGGLQ 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +         +    A  +              L     P   N++         
Sbjct: 274 YNVNLLNDGQPAVLGMVQQIAGSNATQIASDVKKTLDELEKSYPPGLKNVILMDVTEFLF 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV IV+++ +   +  L+   ++ + ++ T   L + G ++ L +
Sbjct: 334 ASIEEVIFTLIITLVLVFIVVYIFLQDFRSTLIPMIAVPVALVGTFLFLWIFGFSINLLT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ ++L I + VD  I+V E +  +  +   S   +     +   S I    +      V
Sbjct: 394 LSALLLAIAIVVDDAIVVVEAVHAKLDQGYKSALTAAIDAMNEISSAIISITLVMSAVFV 453

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLS 529
            + F G   G   R F +TM +SI+IS   A+++  A+   +         K +      
Sbjct: 454 PVSFIGGTSGYFYREFGVTMAVSIVISAINALTLSPALCAVLLKPHEEGHEKKMSFIDRF 513

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
                     I           I+      S+ 
Sbjct: 514 HAGFNYQFDKITNKYKGGVKWVINHGIIAGSLV 546



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/408 (11%), Positives = 117/408 (28%), Gaps = 36/408 (8%)

Query: 445  NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            N   + S+     +  +TI D+    ++A       G     G  +TM       +    
Sbjct: 660  NPMEYTSVLGMIYKQTATIKDAQ---VLAFAPPMISGFSMQNGITMTMQDKTGGDLNKFF 716

Query: 505  SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
              V+  +  + +  ++++        +      + +   +         +      +  L
Sbjct: 717  DNVKKFLAELNKRPEIQTAQTQYNPNYPQYMVDVDVAKTKQAGISPSTVLSVMQGYLGGL 776

Query: 565  FTHGLN-----------------YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            +    N                    D    I +         +S   +  +     +I+
Sbjct: 777  YASNFNAYGKLYRVMIQAGPESRMRPDDLSKIYVRCADGTMSPVSEFVNLKKVYGPANIT 836

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
              N     +  V              + E+ K+ + E         T       +     
Sbjct: 837  RFNLFTSMDVSVTPNSGYSTGDGMKAIAEVAKETLPEGYGYEYSGLTRSEAESSNS---- 892

Query: 668  KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                G+I +   + +Y+ +      +   L  + ++   +     F  LFG   ++    
Sbjct: 893  ---TGLIFALCIVFVYLILSAQYESYILPLSVVLSIPFGLAGAFIFTNLFGHSNDIYMQI 949

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            +++ LIG    + +++     +      T ++ +          L   + TS+A  I +L
Sbjct: 950  SLIMLIGLLAKNAILIVQFALE---RRRTGMAIKYSAILGAGARLRPILMTSLAMVIGLL 1006

Query: 785  PMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            P+    G               G+++     IF+   +       + K
Sbjct: 1007 PLMFASGVGKNGNQTLGAAAVGGMLLGTICQIFVVPALFAVFQWLQEK 1054


>gi|302541118|ref|ZP_07293460.1| protein-export membrane protein SecD [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302458736|gb|EFL21829.1| protein-export membrane protein SecD [Streptomyces himastatinicus
           ATCC 53653]
          Length = 572

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 113/551 (20%), Positives = 210/551 (38%), Gaps = 55/551 (9%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD-----ED 63
           I+ +M+  +G +    +  P+                LG+DL GG+   LE        +
Sbjct: 2   IVIAMVALVGGMFLSGHTTPR----------------LGIDLAGGTSFTLEAKNQPGKPN 45

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGV 122
                 +      +   +   G+    ++   +K I ++       +    +V    Q  
Sbjct: 46  AINTANMNTAVGIIERRVNGLGVSEAEVQTQGDKHIIVNIPKGTNAKQARQQVGTTAQLY 105

Query: 123 NSKLNVDPKKNLLVT--------------------TTEKEISIVLSQNNIDQVISHAIEQ 162
              +                                +  E     S          A+ +
Sbjct: 106 FRPVVTTTSGGKTKQPSSTPSPSASASKGKTDKGGQSGSEKPKASSPTPTSTTQGRAVPE 165

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM--SFHKVLPN 220
           +++  +                G        P + D  +L +          +       
Sbjct: 166 ALKADKAAPTPTPSKTPGSGETGKPSDTPSQPSKSDQEKLAKEFAALDCTKPTGRAAAAE 225

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD-PKTHKPVVDISFDEMGA 279
            +               G+   V    E+ G  ++ A++ F+       +V + F++ GA
Sbjct: 226 KAANSKPTEPVLACSQKGDSKFVLGPSEVEGTDVDDASSVFESQNASGWIVQLDFNDKGA 285

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP------SGKAQISGNFTIETAGILAA 333
           ++F + T +   +         VL   V++           G+A ISG FT +++  LA 
Sbjct: 286 KKFAKTTGELTKQQSPQNRFAIVLDGEVVSDPEVTQGAITGGRATISGGFTQQSSADLAN 345

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
           +L  G+LP+  +I +E  V A LG + +  G  A   GL L+V++++V Y    LVA  S
Sbjct: 346 VLSFGALPLSFDIADETTVSAALGGEQLQAGLIAGAIGLALVVIYLVVYYRGLSLVAMAS 405

Query: 394 IFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           +  + ILT  ++ LLG      L LP++ G ++ IG+  DS I+  ERIR+E R+ +S+ 
Sbjct: 406 LAASAILTYTIMVLLGPGIGFALNLPAVCGAIVAIGITADSFIVYFERIRDEIREGRSLR 465

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +++ G+ RA  TI  S+  + +A  VLF    G V+GFA T+GL+ L+ +       + 
Sbjct: 466 PAVERGWPRARRTILVSDFVSFLAAAVLFIVTVGKVKGFAFTLGLTTLLDVVVVFLFTKP 525

Query: 510 MMIFIIRYKKM 520
           +M  + R    
Sbjct: 526 LMTLLARRPFF 536



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 85/264 (32%), Gaps = 8/264 (3%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +    + KG  +              ++    +  G++       +           G
Sbjct: 274 WIVQLDFNDKGAKKFAKTTGELTKQQSPQNRFAIVLDGEVVSDPEVTQGAITGGRATISG 333

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               Q+            +     I +   V   +  E ++ G++   I    ++IY+ +
Sbjct: 334 GFTQQSSADLANVLSFGALPLSFDIADETTVSAALGGEQLQAGLIAGAIGLALVVIYLVV 393

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            ++   +L A+ +L      T     L G       NL AV   +  IG + +  +V ++
Sbjct: 394 YYR-GLSLVAMASLAASAILTYTIMVLLGPGIGFALNLPAVCGAIVAIGITADSFIVYFE 452

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R  ++      S R  +++         + +   +F++   + +     +  FA  + 
Sbjct: 453 RIRDEIRE---GRSLRPAVERGWPRARRTILVSDFVSFLAAAVLFIVTVGKVKGFAFTLG 509

Query: 803 FGIVVAASSSIFIAAPILLFIYDW 826
              ++          P++  +   
Sbjct: 510 LTTLLDVVVVFLFTKPLMTLLARR 533


>gi|330993093|ref|ZP_08317031.1| Multidrug resistance protein mexB [Gluconacetobacter sp. SXCC-1]
 gi|329759863|gb|EGG76369.1| Multidrug resistance protein mexB [Gluconacetobacter sp. SXCC-1]
          Length = 1041

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/551 (11%), Positives = 147/551 (26%), Gaps = 41/551 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G +        +  + ++PS  P               + + V  
Sbjct: 10  RPVFAWVIGLIIMLVGGVSIF-----RLPIAQYPSIAPP-------------QIAITVTY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   +        I   S    Q +I L+FA     +    +V  
Sbjct: 52  PGASADTVNDTVVRPILQQMFGLDHLEYISAQSYASGQMEIDLTFAQGTNPDIAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  +     L  T   +  +++             + +  +     D +   
Sbjct: 112 KLQLAQPKLPQEVTAQGLSITKAVKNFMMVIAFISTDNSMTGADIADYVASNISDPLSRV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DPS+L +   T   +       N        G        
Sbjct: 172 TGVGDHTLFGA-EYAMRIWLDPSKLYKYSLTVGDVQTAIQTQNIQVSSGELGGVPAVKGA 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +                 +    +   +    +        +       
Sbjct: 231 RLDATIIGPTRL-------------HSPEEFGKILLKVQQDGSQVRIRDVARVELGPQTY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +          +   T          L     P    +         + 
Sbjct: 278 NTHSFYNNMPASGMALKLAPGANQLQTETAVRAQIKELEQFFPPGLKTVYPLDTEPFIVL 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+ + +   +  L+   ++ + ++ T  +L++LG ++   ++
Sbjct: 338 SIKEVVITLAEAIVLVFLVMLVFLQNFRATLIPTIAVPVVLLGTFGILAVLGFSINTLTM 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL +GL VD  I+V E +     + + S   +           +    +      + 
Sbjct: 398 LAMVLAVGLLVDDAIVVVENVERVMTEKKLSPAEAARQSMDEISGALVGIVLVLTAVFLP 457

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +  FGG      R F+IT+  ++ +S+  A+ +  A+   +++    +            
Sbjct: 458 MAAFGGSTGVIYRQFSITIVAAMWLSVLVAMVMTPALCATMLKPGTHEKTTGAAGWFNRH 517

Query: 534 IPDCIAIQFMR 544
                      
Sbjct: 518 FTRLTNGYQKG 528



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 88/243 (36%), Gaps = 7/243 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +    ++     V R  L        SF N        ++L         +T V   +K+
Sbjct: 255 VQQDGSQVRIRDVARVELGPQTYNTHSFYNNMPASGMALKLAPGANQLQTETAVRAQIKE 314

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                 P           P I   +    ++ +  + + + + + +  + +   L     
Sbjct: 315 LEQFFPPGLKTVYPLDTEPFIVLSIKE-VVITLAEAIVLVFLVMLVFLQNFRATLIPTIA 373

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T G  A+ G   N   + A++  +G  V+D +VV + +     +    +S  +
Sbjct: 374 VPVVLLGTFGILAVLGFSINTLTMLAMVLAVGLLVDDAIVVVENV--ERVMTEKKLSPAE 431

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              +S++E  G  V   +      LPMA +GGS       F+I +   + ++   ++ + 
Sbjct: 432 AARQSMDEISGALVGIVLVLTAVFLPMAAFGGSTGVIYRQFSITIVAAMWLSVLVAMVMT 491

Query: 817 API 819
             +
Sbjct: 492 PAL 494



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 76/229 (33%), Gaps = 10/229 (4%)

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
               ++++G   + +  Q   G S   +                                 
Sbjct: 811  QKVEDYNGLNAYEILGQPAAGYSSGDSIAAIKDVLAKLPAGVGYEWTGLSYEQMASGAAT 870

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                 + +I+    +     +   W      +  + L +   +      G+  ++     
Sbjct: 871  GPLYALALIVILFCLA---ALYESWAIPFAVLLVIPLGVLGAIVATLGRGLANDVYFQVG 927

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +LT +G +V + +++ +  +     +    +  + + ++  E L   + TS+A  + V P
Sbjct: 928  LLTTVGLAVKNAILIVEFAK---AFFENGATLEESVLEAGRERLRPILMTSIAFVVGVFP 984

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP-ILLFIYDWRAKN 830
            +A+    G +   +    +  G+V A   +++      ++ +  +R K 
Sbjct: 985  LAIATGAGSAARVAIGTAVVGGMVTATLLAVYFVPLFFVVVLRLFRVKR 1033


>gi|311747555|ref|ZP_07721340.1| AcrB/AcrD/AcrF family protein [Algoriphagus sp. PR1]
 gi|311302680|gb|EAZ79847.2| AcrB/AcrD/AcrF family protein [Algoriphagus sp. PR1]
          Length = 1057

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/693 (11%), Positives = 184/693 (26%), Gaps = 51/693 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  +G+L  L        + ++P   P               + +  +
Sbjct: 8   KRPVTAMVISIVIVLVGVLAIL-----NLPVTQYPDITPPV-------------VSVAAN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKVT 116
                   ++      + + +    G+   S       Q ++ ++F      +     V 
Sbjct: 50  YTGADAKTVEQTVATPIETQVNGTPGMAYISSNNTSTGQMQMNVTFEVGTDIDIATLDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  +V        +++      +        S        D +  
Sbjct: 110 NRVSIAEPSLPEAVRRLGVVVRKRNPSIMMVLSITSPEGTHDRKFLSNYANIFIKDALLR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P +L Q   T  +++      N        G     D 
Sbjct: 170 VDGVGDITAIG-QDFSMRVWLQPDKLAQYGITAREVTSAIQEQNLQVAAGTVGSMPQYDY 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y +     +                    + +  +       F      I      
Sbjct: 229 QAFEYPITVNGRLERAEEFED------------IVLRTNPQDGSIVFLKDVARIELGQFD 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L        +       +   T E        L+          V   +V    
Sbjct: 277 YGRYSTLDGEESAILLIYQAPGSNALETAEGVYGALDELQESFPTDMKYTVPFESVSVVE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+ V+F+ +   +  LV   +I +++I T     LLG T+   +
Sbjct: 337 VSIDEVLHTFGEALLLVIFVVFLFLQSWRATLVPVLAIPVSIIGTFIFFPLLGFTINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G VL IG+ VD  I+V E ++        S   +  +      + +    +      +
Sbjct: 397 LFGFVLAIGIVVDDAIVVVEAVQHYIDSRKISAKEATKLAMKDITAPVIAIALILSAVFI 456

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR-----------YKKMK 521
            + F     G   + FAIT+ +S+LIS F A+S+  A+   +++            K   
Sbjct: 457 PVGFIPGIVGRMYQQFAITIAISVLISAFVALSLTPALCTLLLKPSEVNEHGKGLNKFFY 516

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             ++            +     RA    + +  +F+                + +G + +
Sbjct: 517 KFNLWFERTTNNYTSGVKASIKRAPLVLILLICIFAGTFGLFQTKPTGFLPTEDEGRLYI 576

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +        +  +  +  +       +  +                         +   
Sbjct: 577 TLELPEASSSNRTQEVMSKINTILADTEGINHVTGIGGLNVISFSFKSNSATFFVQMDPW 636

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                P   +        +    +    +V V 
Sbjct: 637 EERQDPSLQLAGIMGTLNQKFSSITEGNVVVVA 669



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 689  KWYFALGAITTLIL-DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W      +  L L      +    L  ++ N+ A   ++TLIG +  + +++ +  ++ 
Sbjct: 897  SWSVPFSVLLALPLGAFGAIIALHFLPKLDNNIYAQIGLITLIGLAAKNAILIVEFAKE- 955

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                   +       +++   L   + TSMA  + V+P+A+    G     +    +  G
Sbjct: 956  --RVDVGMPILKATLEAVKLRLRPIIMTSMAFILGVVPLALSNGAGAVARQTIGWTVIGG 1013

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++ A   +IF    + + I  
Sbjct: 1014 MLAATFLAIFFVPVLYVVITK 1034



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 82/243 (33%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V                   E   L+  Q    +++     +     ++ E  
Sbjct: 260 SIVFLKDVARIELGQFDYGRYSTLDGEESAILLIYQAPGSNALETAEGVYGALDELQESF 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P             +    I + +     + + ++  +++    W   L  +  + + I 
Sbjct: 320 PTDMKYTVPFESVSVVEVSIDEVLHTFGEALLLVIFVVFLFLQSWRATLVPVLAIPVSII 379

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  FF L G   N   +   +  IG  V+D +VV + +     + +  IS ++    ++
Sbjct: 380 GTFIFFPLLGFTINTLTLFGFVLAIGIVVDDAIVVVEAV--QHYIDSRKISAKEATKLAM 437

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLF 822
            +     +  ++      +P+    G V      FAI +A  ++++A  ++ +   +   
Sbjct: 438 KDITAPVIAIALILSAVFIPVGFIPGIVGRMYQQFAITIAISVLISAFVALSLTPALCTL 497

Query: 823 IYD 825
           +  
Sbjct: 498 LLK 500


>gi|332308344|ref|YP_004436195.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175673|gb|AEE24927.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1059

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 79/679 (11%), Positives = 191/679 (28%), Gaps = 33/679 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +   +G +        Q  +  +P  +P   +                 
Sbjct: 8   RRPIFAAVISLIFFIVGAISVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   ++
Sbjct: 54  NPKVIAETVASPLEQEINGVENMLYMSSQATSDGTMTLTITFAIGSDVDLAQTQVQSRVE 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S   +    D++   E  
Sbjct: 114 RAKPRLPEEVQRLGIVTEKSSPDLTMVVHLTSPDERYDMLYLSNYAVLNVKDELARIEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +    DP+++  L  + + +       N        G +   DSD  Q
Sbjct: 174 GQVRVFGAGDYSMRVWLDPNKVAALGLSPSNIVSAIREQNQQAAAGSLGAQPSGDSD-FQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L+  K  ++ +              +    I       +         +    +     
Sbjct: 233 LLINVKGRLTDVE-------------EFEDIIIKVGEQGQISRLKDVARVELGASTYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L           +         GS  
Sbjct: 280 SMLDNKDAAAMPVFQASGSNAIQISDDVRSKMAELSKTFPEGLSYDIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S+ G+
Sbjct: 340 AVVKTLFEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIADGLSPVAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+T+ +S  IS   ++++  A+   +++    K   +       L    
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKGHDSKKDALTRGMDKLLGGWL 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                        G   +        L    +  G+    G+Q        V     +  
Sbjct: 520 FNPFNRFFARLSDGYGWVVKKVLRFGLLVGVIYIGLVGLTGLQFATTPTGYVPGQDKQYL 579

Query: 598 LESLQIGDISFQNFDGE-KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +   Q+ D +  +   E    + R+  +            +     T       +     
Sbjct: 580 VAFAQLPDAASLDRTEEVIKEMSRIALEQPGVSNSVAFPGLSINGFTNSTNSGIVFTPLD 639

Query: 657 VGPKISRELIRKGIVGVII 675
                +   +  G +   +
Sbjct: 640 DFADRTDPSLSAGAIAAAL 658



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   L    + G + N+      + L+G +  + +++ +  ++  
Sbjct: 901  SLSLPLAIILIIPMTLLSALSGVLIAGGDNNIFTQIGFIVLVGLATKNAILIVEFAKE-- 958

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  + I ++    L   + TS+A  + V+PM      G  +  +  + +  G+
Sbjct: 959  -LQDEGRTAYEAILEAGRLRLRPILMTSIAFIMGVVPMVFSSGAGAEMRQAMGVAVFSGM 1017

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      + +       +     + +
Sbjct: 1018 IGVTVFGLLLTPLFYYVLAKRGERKS 1043



 Score = 46.2 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 79/228 (34%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L++     +      G     +    +   +       E +   I     +
Sbjct: 273 ASTYALRSMLDNKDAAAMPVFQASGSNAIQISDDVRSKMAELSKTFPEGLSYDIVYDPTV 332

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + E V   +   ++   +V V+               W  ++  +  + + +  T 
Sbjct: 333 FVRGSIEAVVKTLFEAVLLVVLVVVL-----------FLQTWRASIIPLVAVPVSLVGTF 381

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K++ E 
Sbjct: 382 AFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAD---GLSPVAATQKAMKEV 438

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 439 TGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|312147849|gb|ADQ30508.1| protein-export membrane protein SecF [Borrelia burgdorferi JD1]
          Length = 299

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 73/300 (24%), Positives = 133/300 (44%), Gaps = 6/300 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +   I      +    V   ++         +  G N+GIDF   + + +   +      
Sbjct: 1   MQRVINFSKYGSNVLIVSAVLILVGLIYTFFYHGGYNWGIDFSSRVNINLSIEKSNIKEN 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKITEIVPL 648
               + S     +   +                  V            ++ K        
Sbjct: 61  EIKEIFSPIYKTLDVNSIFSPDQNKSEFSIMVKSDVIDYAFKTEVQKTILDKLKETFDAN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + ++  +    S  L  + I  V+ + I +LIYI +RFK  +A+ +I ++  DI    
Sbjct: 121 IEVLDSYFIDSSFSSTLRIRSIFLVLGTFILILIYITLRFKLSYAIASILSIFHDIFFIA 180

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  +F IE N   + A+LT+IGYS+ND ++++DR+R N+K   T  +F ++++ SI++T
Sbjct: 181 AFLGVFRIEINSYIIVAILTIIGYSLNDTIIIFDRIRDNVKRL-TDNTFLNVLNISISQT 239

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           L R+V TS+  F++V  + V+    I  F++    G++V   SS+FIA+PILL +Y    
Sbjct: 240 LSRTVLTSVTTFVAVFSIYVFTEGSIKDFSLVFMVGVIVGTYSSVFIASPILLNLYKKIK 299


>gi|330995697|ref|ZP_08319595.1| RND transporter, HAE1 family [Paraprevotella xylaniphila YIT 11841]
 gi|329574756|gb|EGG56317.1| RND transporter, HAE1 family [Paraprevotella xylaniphila YIT 11841]
          Length = 1067

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/559 (11%), Positives = 152/559 (27%), Gaps = 36/559 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +       +  +I  +G +      L    ++++P   P                     
Sbjct: 8   KRPVMAFSISILILIVGFIS-----LGTLPVEQYPDIAPPTVR---------VSASYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             D V   +    +E  + ++       +     +  I++ F      +  A  V   + 
Sbjct: 54  SADAVMKSVIQPLEEAINGVENMTYMESTATNSGSADISIYFKQGTDPDMAAVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  +  +  + TT  +   + +               +  +    + QI   E  
Sbjct: 114 KAQGLLPAEVTRIGVTTTKRQTSFLQIGALYSPSGRYDKTFIANYLDINVVPQIKRIEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +        +     P  + Q     + ++      N        G           
Sbjct: 174 GDVMALGD-TYSMRIWLKPDVMAQYGLVPSDVTAVLGEQNLEAPTGSLGENSQNTFQ--- 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                     +    +                 +          
Sbjct: 230 -------------FTMKYKGRLKSIEEFQNIVVRSMPDGNVLRLKDVARVELGTQSYAFD 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +        +    A  +     E    L   +          +    +      S  
Sbjct: 277 SNVDGHPSCTFMVFQVAGSNATEVNENIAKLLEDIEKDLPEGLEFMTMMSSNDFLFASIH 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   LV++V++  +   K  L+   SI ++++ T A + + G ++ + ++  +
Sbjct: 337 EVVETLVVAIILVILVVYFFLQDFKSTLIPSISIIVSLVGTFAAMQMAGFSINILTLFAL 396

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG  VD +I+V E ++ +      S + +     +     +    +  +   + + F
Sbjct: 397 VLVIGTVVDDSIVVVEAVQAKFDVGYTSPYLATKDALADVTMAVITCTLVFMAVFIPVTF 456

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            GG +      F +TM +++ IS   A+++  A+    +R    K   ++         +
Sbjct: 457 MGGTSGIFYTQFGVTMAVAVGISCLNALTLCPALCAMWMRPASGKKGKMSINGIVKAAYN 516

Query: 537 CIAIQFMRARFWGVGISIL 555
                 M     GV   I 
Sbjct: 517 ASFNAMMAKYKKGVMFFIH 535



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/373 (10%), Positives = 124/373 (33%), Gaps = 10/373 (2%)

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+ +    L+   G   + F        ++     I  V  +M     Y     +  + +
Sbjct: 135 TSFLQIGALYSPSGRYDKTFIANYLDINVVPQIKRIEGVGDVMALGDTYSMRIWLKPDVM 194

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +++ L+P  +              S+  +  +               +    + V +   
Sbjct: 195 AQYGLVPSDVTAVLGEQNLEAPTGSLGENSQNTFQFTMKYKGRLKSIEEFQNIVVRSMPD 254

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            ++  ++              + + + +               T V E + K + +I   
Sbjct: 255 GNVLRLKDVARVELGTQSYAFDSNVDGHPSCTFMVFQVAGSNATEVNENIAKLLEDIEKD 314

Query: 649 STIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
                  +     +  L       +  ++++ I +++ ++     +   L    ++I+ +
Sbjct: 315 LPEGLEFMTMMSSNDFLFASIHEVVETLVVAIILVILVVYFFLQDFKSTLIPSISIIVSL 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T     + G   N+  + A++ +IG  V+D +VV + ++    +  T  S       +
Sbjct: 375 VGTFAAMQMAGFSINILTLFALVLVIGTVVDDSIVVVEAVQAKFDVGYT--SPYLATKDA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI-L 820
           + +     +  ++      +P+   GG+       F + MA  + ++  +++ +   +  
Sbjct: 433 LADVTMAVITCTLVFMAVFIPVTFMGGTSGIFYTQFGVTMAVAVGISCLNALTLCPALCA 492

Query: 821 LFIYDWRAKNARI 833
           +++     K  ++
Sbjct: 493 MWMRPASGKKGKM 505



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 89/289 (30%), Gaps = 7/289 (2%)

Query: 544  RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
                     +         ++      Y +D +    + V  N  +       +++ +  
Sbjct: 749  GYCGGIYASNFNLFSKVYRIMIQADPKYRLDEQSLNNIFVRINGEMAPISQFLSVKKMMG 808

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
             +I+ +    +             S    + +E V ++                  + + 
Sbjct: 809  PEITNRFNLFDAITCNINPAPGYSSGEAMKAIEKVFEETMPNRYHYEYGGISREEKQTAG 868

Query: 664  ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
                  I  + +  I  LI   +   +   L  I ++   +  +  F  LFG+E N+   
Sbjct: 869  SNDTVFIYVLCVVLIF-LILSCLYESFLVPLAVILSVPCGLMGSFLFAWLFGLENNIYLQ 927

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              V+ LIG      +++ +   +  +     +   +    +  E L   + T +     +
Sbjct: 928  TGVIMLIGLLAKTAILITEFASERRRQ---GMGIVEAAYAAAQERLRPILMTVLTMIFGM 984

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            LP+      G +   S    +  G+++   + +FI     +     + K
Sbjct: 985  LPLMFASGAGANGNSSLGTGVVGGMLIGTLALLFITPVFFIVFQYLQEK 1033


>gi|312131241|ref|YP_003998581.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Leadbetterella byssophila DSM 17132]
 gi|311907787|gb|ADQ18228.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Leadbetterella byssophila DSM 17132]
          Length = 1039

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 165/552 (29%), Gaps = 39/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++  +GL+  +     Q  + ++P   P              ++      
Sbjct: 8   RPVLSIVISVLMVLVGLISLV-----QLPITQYPDIAPPE-----------VNVTTRFTG 51

Query: 63  DDFVNGFLQMYSDELRSFLKKE-GIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLF 118
            +     ++     L   +    G+   +     +    I + F      +  A  V   
Sbjct: 52  ANADA-VVKAVITPLEKAINGVPGMSYMTSVSGNDGTGIIQIIFKAGVDPDVAAVNVQNR 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  V  +L  +  K  ++    +   ++      +            +    + ++   +
Sbjct: 111 VTSVMDELPEEAIKAGVIVEKVQNSMLMYLNILSEDKDLDEKFLFNFVDINVLKELKRID 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                    R    +    +P ++     +  ++       N        G    +    
Sbjct: 171 GVGFAEMMGRRDYAMRVWLNPEKMLMYNISANEVIEKLKQQNVEAAPGKIGESSGKAGQS 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            QY++    +++                     +   +             I        
Sbjct: 231 LQYVLRYTGKLNTEQ-------------AYENLVLRSKSDGEILRLRDIAEIEFDSQDYN 277

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLG 357
                        +   +   +    IE      A L+ +   P     +          
Sbjct: 278 VLSKENGQPSASIMIKQRPGSNAKEVIENIKTRMAELKDSSFPPGMSYTIGYDVSAFLDA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S ++   T      LV +V+F+ +   +  ++   ++ +++I T   + +LG +L L ++
Sbjct: 338 SIAVVLRTLVEAFLLVALVIFIFLQDTRSTIIPIIAVPVSLIGTFFFMQMLGFSLNLITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD+ I+V E +  +   K  S   + +   S     I    +      V 
Sbjct: 398 FALVLAIGIVVDNAIVVIEAVHAKMESKGLSPLKATEEAMSEISGAIIAITLVMSAVFVP 457

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G +    R F++TM ++I++S  TA+++  A+    ++    +         F  
Sbjct: 458 VSFMEGPSGIFYRQFSLTMAVAIVLSGVTALTLTPALCALFLKDVHGEHKKGFIARFFDG 517

Query: 534 IPDCIAIQFMRA 545
                     + 
Sbjct: 518 FNRWYNGLSTKY 529



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 97/264 (36%), Gaps = 11/264 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              L + +    ++  +R   E                     +  +         V+E 
Sbjct: 247 YENLVLRSKSDGEILRLRDIAEIEFDSQDYNVLSKENGQPSASIMIKQRPGSNAKEVIEN 306

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV----IISAIAMLIYIWIRF-KWYF 692
           +K ++ E+   S                +   I  V    + + + + + I+I       
Sbjct: 307 IKTRMAELKDSSFPPGMSYTIGYDVSAFLDASIAVVLRTLVEAFLLVALVIFIFLQDTRS 366

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  I  + + +  T  F  + G   NL  + A++  IG  V++ +VV + +    K+ +
Sbjct: 367 TIIPIIAVPVSLIGTFFFMQMLGFSLNLITLFALVLAIGIVVDNAIVVIEAVH--AKMES 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +S     +++++E  G  +  ++      +P++   G        F++ MA  IV++ 
Sbjct: 425 KGLSPLKATEEAMSEISGAIIAITLVMSAVFVPVSFMEGPSGIFYRQFSLTMAVAIVLSG 484

Query: 810 SSSIFIAAPI-LLFIYDWRAKNAR 832
            +++ +   +  LF+ D   ++ +
Sbjct: 485 VTALTLTPALCALFLKDVHGEHKK 508



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 66/167 (39%), Gaps = 9/167 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +I +   + +Y+ +      +   L  I +L + I   L F  + G+E N+ A  +++ L
Sbjct: 875  IIFALCLLFVYLILAAQYESFALPLPIILSLPIGIFGALFFLWILGLENNIYAQISMVML 934

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG    + +++ +     +      +S      ++    L   + TS A    ++P+ + 
Sbjct: 935  IGILGKNAILIVE--FAVLIQNEKGLSPLMAAIEAATARLRPILMTSFAFIAGLIPLMLA 992

Query: 789  WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G   I   +       G+++     + I   + +     + K+ ++
Sbjct: 993  SGAGEIGNRTIGSATVGGMLLGTVFGVIIIPGLYVVFA-KKMKHEKV 1038


>gi|110637554|ref|YP_677761.1| acriflavine resistance protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110280235|gb|ABG58421.1| acriflavine resistance protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 1026

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 164/605 (27%), Gaps = 43/605 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I   G L        +  +  FP   P               +     
Sbjct: 9   KRPVLTIVMNGIILLFGYL-----GYQKLGIREFPVIDPPVV---------SIRVGYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++       S     + I++ F      E   + V   +  
Sbjct: 55  SAEVIESQITYPLEKAINGIEGVKSIASSSSIGSSNISVEFELGIDMETATNDVRDKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +++        +++    ++ ++  +E         I ++       
Sbjct: 115 AQRSLPQDLDGPPVISKNNNLSEYIIAMTVTNKSLTD-LEICEYADDVLIPRLQTIPGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   +       N               +     
Sbjct: 174 TVQLMGEKKYAMRLWLDPIKLEAYGVTLQDVKQALDKENVELPAGRLEGNSTELTVKANA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                        ++       R                     
Sbjct: 234 --------------------KFSNAYGFDNMIIRSENNRVVRLQDVGYAELGAENEQSSY 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        I   +   +     +        L+          +          S   
Sbjct: 274 RINGVPSTACILIPQPGANHVEIAKEFYKRYEQLKTELPAEYELSISNDMTRFVTKSIHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+I++++        L     I +++I T  ++ L G ++ + ++  IV
Sbjct: 334 VIETLFIAVLLVVIIIYLFFRDWSVALRPLIDIPVSLIGTFFIMYLFGFSINILTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFFF 480
           L  GL VD  I+V E I ++     + F +   G +      I  S     I   ++F  
Sbjct: 394 LSTGLVVDDGIVVTENIYKKMELGMNPFQAAIDGANEIVFAVISTSVTLIAIFLPIIFME 453

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G     F I +  SI IS+F ++++   +  ++++    K+        FF+  +  
Sbjct: 454 GFVGKLFMEFGIVVASSIFISIFVSLTLTPMLNAWLVKDVHKKTRFYEKTEPFFVALNES 513

Query: 539 AI----QFMRARFW-GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 QFM+ R+     + I   +              ++ +  I++ +          
Sbjct: 514 YRKSLQQFMKKRWLAFFILGIAMVLTVFVWKALPAEIAPLEDRSMIRITITTPEGASFEY 573

Query: 594 VRSNL 598
               +
Sbjct: 574 TDDFM 578



 Score = 87.8 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 46/200 (23%), Positives = 83/200 (41%), Gaps = 11/200 (5%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           +  E +K ++     LS   +      K   E+I    + V+   + ++IY++ R  W  
Sbjct: 302 KRYEQLKTELPAEYELSISNDMTRFVTKSIHEVIETLFIAVL--LVVIIIYLFFR-DWSV 358

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           AL  +  + + +  T     LFG   N+  + A++   G  V+D +VV + +    K   
Sbjct: 359 ALRPLIDIPVSLIGTFFIMYLFGFSINILTLLAIVLSTGLVVDDGIVVTENI---YKKME 415

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV--AAS 810
             ++         NE +   + TS+      LP+    G V   F   M FGIVV  +  
Sbjct: 416 LGMNPFQAAIDGANEIVFAVISTSVTLIAIFLPIIFMEGFVGKLF---MEFGIVVASSIF 472

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            SIF++  +   +  W  K+
Sbjct: 473 ISIFVSLTLTPMLNAWLVKD 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 71/166 (42%), Gaps = 9/166 (5%)

Query: 671  VGVIISAIAMLIYIWIRFKWYFALGA-ITTLILDITKTLGFFAL--FGIEFNLTAVAAVL 727
               +     +L+Y+ +  ++   +   I  L + +    G F+L  F    NL +   ++
Sbjct: 853  TSSVFILALLLVYMILAAQFESFIDPFIIMLTVPLAIGGGVFSLWYFNQTNNLFSQIGLI 912

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG    + +++ +      +L    +S  + + ++    L   + TS+A  +  LP+A
Sbjct: 913  MLIGLVTKNGILIVEFAN---QLKQEGLSIAESVVEASVARLRPILMTSIATALGALPIA 969

Query: 788  V-WGGS--VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            V +G +        I +  G++++ + ++++   +  +      K+
Sbjct: 970  VAFGAASKSRTGMGIVIVGGLLISLALTLYVIPAVYSYFSRAAKKD 1015


>gi|300773769|ref|ZP_07083638.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300759940|gb|EFK56767.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 1521

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/559 (13%), Positives = 168/559 (30%), Gaps = 32/559 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++   I      +     L    + +FP  +P + +                 
Sbjct: 7   KRPILSLVISVFIT-----LLGLLSLFTLPVTQFPDIVPPSVV---------VTANYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQ 120
             +     + +  ++  + +              N  I + F      +  A  V   + 
Sbjct: 53  NAEVSTNAVAIPLEKAINGVAGMTSMSTVSTNNGNTLIQIFFKVGTDPDIAAVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  K  + T  E    ++      +   +             + ++   E  
Sbjct: 113 TVLDELPEEVIKAGVTTEKEVNSMLMYLNIFSEDKNADERFIYNFTDINILKELKRIEGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P RL     +T ++       N        G+   +  +  Q
Sbjct: 173 GFAQIMGMRDYAMRIWLKPDRLAAYSISTDEVIQSLRSQNIEAAPGQTGIGSDKVVNMQQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y++              T  F   +    + I  +  G+    +         L   +  
Sbjct: 233 YVL------------RYTGKFTEASEYENIPIRANADGSILRIKDIATLEFGSLDYEMVS 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +    P  +  +       + +        +A +  +   P     +          S S
Sbjct: 281 KTDGRPSASIMMKQLPGSNAQDVINNVKKRMAELKESSFPPGMTYTMGYDVSRFLDASIS 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V+F+ +   +  L+   ++ + +I  L  + +LG ++ L ++  +
Sbjct: 341 SVITTLIEAFLLVFLVVFIFLQDFRSTLIPALAVPVCLIGALFFMQMLGFSINLLTLFAL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQS-----VFCSLDMGFSRAYSTIFDSNITALIATV 475
           VL IG+ VD+ I+V E +  +   +++        +       A   I        I   
Sbjct: 401 VLAIGIVVDNAIVVVEAVYAKMEDDETLTPREATFAAMKEVGSAIIAITLVMSAVFIPVA 460

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            L    G   R F++T+  +I+IS   A+++  A+   +++    K    N L+RFF   
Sbjct: 461 FLSGPVGIFYRQFSLTLASAIVISGINALTLTPALCALMLKSPHGKEKKNNLLNRFFNGF 520

Query: 536 DCIAIQFMRARFWGVGISI 554
           +             V    
Sbjct: 521 NKWYNNTSGKYAVIVRTIA 539



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 93/266 (34%), Gaps = 13/266 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + + AN    +  ++                  +      +  +         V+  
Sbjct: 247 YENIPIRANADGSILRIKDIATLEFGSLDYEMVSKTDGRPSASIMMKQLPGSNAQDVINN 306

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII----SAIAMLIYIWIRF-KWYF 692
           VKK++ E+   S                +   I  VI     + + + + ++I    +  
Sbjct: 307 VKKRMAELKESSFPPGMTYTMGYDVSRFLDASISSVITTLIEAFLLVFLVVFIFLQDFRS 366

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +   L F  + G   NL  + A++  IG  V++ +VV + +   M+   
Sbjct: 367 TLIPALAVPVCLIGALFFMQMLGFSINLLTLFALVLAIGIVVDNAIVVVEAVYAKMEDDE 426

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
           T ++ R+    ++ E     +  ++      +P+A   G V      F++ +A  IV++ 
Sbjct: 427 T-LTPREATFAAMKEVGSAIIAITLVMSAVFIPVAFLSGPVGIFYRQFSLTLASAIVISG 485

Query: 810 SSSIFIAAPILLFI----YDWRAKNA 831
            +++ +   +   +    +    KN 
Sbjct: 486 INALTLTPALCALMLKSPHGKEKKNN 511



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 75/225 (33%), Gaps = 10/225 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV- 673
              + +          A       V   I  +               +++E    G   V 
Sbjct: 818  TRYNMFASAMLNGDPADGYSSGQVISAIERVAKEKLPAGYTFEWSGMTKEQKASGNQAVY 877

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I     + +Y+ +      +   L  + +L   I     F  +FG+E N+ A  A++ LI
Sbjct: 878  IFGICLLFVYLLLCAQYESFLLPLPVLFSLPAGIFGAFLFLKVFGLENNIYAQVALVMLI 937

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G    + +++   +   +  +   +S  +   ++    L   + TS A    ++P+    
Sbjct: 938  GLLGKNAILI---IEYAVIKHKQGLSVIEAAIEAAVMRLRPILMTSFAFAAGLVPLAMAS 994

Query: 790  GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G   +   S  +    G+++     + I   + +       K+ +
Sbjct: 995  GAGALGNRSIGLAALGGMLIGTIFGVLIIPGLYVLFNADGKKDRK 1039


>gi|90578145|ref|ZP_01233956.1| protein translocase subunit SecF [Vibrio angustum S14]
 gi|90441231|gb|EAS66411.1| protein translocase subunit SecF [Vibrio angustum S14]
          Length = 300

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/293 (25%), Positives = 145/293 (49%), Gaps = 6/293 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           + + I     + R+    +SI   + SI  +   GLN+G+DF GG+   +  +  +  S 
Sbjct: 1   MKNWIIKNLTKLRYMTGIVSIALMVISITFICVRGLNWGLDFTGGVVSEIQMDSQITNSE 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +++    D+     D    +++R                 + K +  +     + N
Sbjct: 61  IAPLMDAGFNQDVVVIAADEPGRWILRYAAPAKGVN-----YPEITKVLAPLHANIQVLN 115

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
           T IVGP++  EL  +G + ++++ + +L Y+  RF+W  A G++  L+ D+   +GFFA+
Sbjct: 116 TSIVGPQVGAELAEQGGLALLVTMLCILGYLSYRFEWRLAAGSLLALLHDVILAVGFFAM 175

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             +EFNLT +AA+L ++GYS+ND +V+ DR+R+ +             +++I  T  R++
Sbjct: 176 TQMEFNLTVLAAILAILGYSLNDSIVIADRIRELLIAKPK-QDIEATNNEAIVATFSRTM 234

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            TS    ++V  + + GGS +  F+I M  GI+    SSI +   +  F+   
Sbjct: 235 VTSGTTLMTVGSLWLLGGSSLQGFSIAMFIGILTGTWSSISVGTLLPEFLGLK 287


>gi|254295537|ref|YP_003061559.1| acriflavin resistance protein [Hirschia baltica ATCC 49814]
 gi|254044068|gb|ACT60862.1| acriflavin resistance protein [Hirschia baltica ATCC 49814]
          Length = 1032

 Score =  168 bits (425), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/637 (12%), Positives = 186/637 (29%), Gaps = 55/637 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   G++        +  L  +P                   + +E  
Sbjct: 9   KKPVFASVISLILVVFGIVS-----FDRLALREYPDIDAPV-------------VSIETS 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   V   +    ++  S ++       + R  Q+ I++ F+  +  +  A+ +  
Sbjct: 51  YPGASASIVETRITQILEDRISGVEGIRFINSTSRDGQSNISIEFSVDQDIDAAANDIRD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + GV + +  D +   +         I+    + D     + E S    R  ID+    
Sbjct: 111 RISGVLNNIPDDAEPPEISKEDGNNDVILWLNLSSDS--MTSPELSDYADRYLIDKFSAL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          L    D   L     T + +       N               + 
Sbjct: 169 DGVARVRTGGARNYALRVWIDRRELAARELTVSDIESALRSENIESPAGSLESSTRTYTL 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                     E                       +                 + K     
Sbjct: 229 RIDRTFRTPEE-------------------FATLVLASGEDGSLIRLGDVARVEKGTTED 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +       ++  +     + A  LAA L                      
Sbjct: 270 RTLFRGNGVPMIGVGIIKQSTANTVDVAKAARDLAAKLNPTLPEGMAIAQTYDTSVFISA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T AI  GLV +V+F+ +   +  ++   ++ +++I T   L L G ++ L ++
Sbjct: 330 SIAEVYKTLAISVGLVTLVIFLFLGSIRATIIPAVTVPVSIIATFTFLYLFGFSVNLLTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E I      ++++   +   G  +    +  + +  +   V 
Sbjct: 390 LALVLAIGLVVDDAIVVLENISRRIEEEDETPLVASFFGTRQVGFAVIATTLVLIAVFVP 449

Query: 477 LFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G   R    FA+TM  ++  S   A+++   +   +++ +K   +          
Sbjct: 450 ITFLEGDLGRLFTEFALTMAAAVAFSSLLALTLTPMLASKLLKKEKSTGVFSVLPRMVDS 509

Query: 534 IP--------DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           +           +     R    G+ +  + +   +            + +G   + V  
Sbjct: 510 VFKVLRSGYGWILDRLIFRPILVGLALIGMTASAWLLFQNIDNEYVPSEDRGAFFISVRG 569

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            +    +     ++ ++   + +      +  L+R  
Sbjct: 570 PQGASFAQTSKYIDEIERRLLPYTETGEIQRLLLRAP 606



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 80/233 (34%), Gaps = 8/233 (3%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           E   +   +     G              + A   +   +   + E + ++   +T +  
Sbjct: 268 EDRTLFRGNGVPMIGVGIIKQSTANTVDVAKAARDLAAKLNPTLPEGMAIAQTYDTSVFI 327

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
                E+ +   + V +  + + +++         +    T+ + I  T  F  LFG   
Sbjct: 328 SASIAEVYKTLAISVGLVTLVIFLFLG---SIRATIIPAVTVPVSIIATFTFLYLFGFSV 384

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           NL  + A++  IG  V+D +VV + +  + ++     +          +     + T++ 
Sbjct: 385 NLLTLLALVLAIGLVVDDAIVVLENI--SRRIEEEDETPLVASFFGTRQVGFAVIATTLV 442

Query: 779 AFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                +P+    G +      FA+ MA  +  ++  ++ +   +   +     
Sbjct: 443 LIAVFVPITFLEGDLGRLFTEFALTMAAAVAFSSLLALTLTPMLASKLLKKEK 495



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 58/164 (35%), Gaps = 7/164 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             I  + + + +  +F+ +   +  +  +   I   L    L G   N+     ++ LIG 
Sbjct: 863  GIGLLVVFLVLAAQFESYRHPIVIMLCVPGTIAGGLLGLWLTGNTLNIYTQIGLIMLIGL 922

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +      +L     +F   + ++        + TS+      +P+ +    
Sbjct: 923  AAKNGILIVEFAN---QLRDEGKTFDVALKEAALARFRPIIMTSLTTAAGSVPLLLSSGA 979

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G     +  + + FG+V AA  ++         I         +
Sbjct: 980  GAETRMAIGVVILFGVVAAALITVLFVPTAYALISRGSGSPNEV 1023


>gi|317182765|dbj|BAJ60549.1| preprotein translocase subunit SecD [Helicobacter pylori F57]
          Length = 525

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 274/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G   ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKFFNARLIVFICALLLGAGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASTLEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPI 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|307565928|ref|ZP_07628387.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella amnii CRIS 21A-A]
 gi|307345356|gb|EFN90734.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella amnii CRIS 21A-A]
          Length = 1074

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/700 (9%), Positives = 185/700 (26%), Gaps = 57/700 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G++  +        ++++P   P               + +   
Sbjct: 8   KRPVLSTVISIFFVLLGIIGLI-----ALPVEQYPDIAPPT-------------IQVSTS 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVT 116
                   +       L   +   E +   + +   + + +IT+ F      +  +  V 
Sbjct: 50  YAGADAQTVLNSVIVPLEESINGVENMTYMTSQATNEGKAQITIYFKQGTDPDMASVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    + L  +  +  + T+  +  ++++     D         +       +  +  
Sbjct: 110 NRVTQAQALLPSEVTQVGVTTSKRQSSNVIIFALTSDDGRYDEKFLTNYSDINIVPALKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +          +   +     P +++Q       +       N       FG +     
Sbjct: 170 VKGVGNVQIFGALTYSMRIWLQPDKMKQYNLMPQDIVAALAEQNIEAAPGKFGEQSD--- 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    I          +      I      
Sbjct: 227 -------------MAYEYTMRYKGRLKNPQEYNNIIISSNTDGHTLYLRDVAKIELGGLS 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                               +  +                    P     V         
Sbjct: 274 YAVSMESDGKPAVIGAVQQVSGSNATEVANGVKKEFENQAKNFPPGMKMNVVVDVTDFLF 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  +   LV +V+++ +   +  L+   ++ +++I T   L + G ++ L +
Sbjct: 334 ASIEEVFFTLFLTLALVFLVVYIFLQDLRSTLIPLIAVPVSLIGTFLFLWMFGFSINLLT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++ ++L I + VD  I+V E +  +       S+  S+D     + + I  + + A +  
Sbjct: 394 LSALLLAIAIVVDDAIVVVEAVHAKLDIGYKRSLTASIDAMNELSSAIISITLVMAAVFV 453

Query: 475 VVLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------- 521
            V F  G      R F +TM +SI+IS   A+++  A+   +++    K           
Sbjct: 454 PVSFLSGTSGTFYREFGVTMAISIVISAINALTLSPALCALLLKPHNKKENKANSTFINR 513

Query: 522 ---SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
              S +             +     +     + +     +  I +  T       +  G 
Sbjct: 514 FNTSFNTAFDKITNKYKKGVERIIKKPIITAIAVVFGILVLIITMSTTSTGLVPNEDTGN 573

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           I + +        S  R  +  +     +    +  +N +         S      +++ 
Sbjct: 574 IMISISTPPGTSKSATRQIVNDVDKMLANNPAIETRQNLVGFSLIGGQGSNQAAFFIKLK 633

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                    +            +    +      +++  I
Sbjct: 634 SFDKRASKNIFLRIAECFKQGSLIPLFLNPMESNMVLGMI 673



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/389 (10%), Positives = 117/389 (30%), Gaps = 18/389 (4%)

Query: 460  YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            Y  +       ++A       G   V G  +TM      ++   +S+ R+ +  + +  +
Sbjct: 674  YKQVASIKGAQILAFGPPMIPGFSMVNGITMTMQDKTGGNINKFLSVTRSFLEELQKRPE 733

Query: 520  MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-----YGID 574
            +        +++      + +   +         +         ++    N     Y + 
Sbjct: 734  VSKAMTTYDTQYPQYMVDVDVTKTKQAGISPKTVLSTLQGYYGGMYASNFNTYGKLYRVM 793

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
             +G  +  +      ++ V      +     I+ Q   G +       +   D     + 
Sbjct: 794  IQGTAESRLTKESLQNIYVRTPKGMAPINSFITLQRIYGPQVMNRFNLFTSIDVNITPQE 853

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG----VIISAIAMLIYI---WIR 687
                   +  I  +S        G + S     +        +I +   + +Y+    + 
Sbjct: 854  GYSSGDVLKAIKEVSKDHLPAGYGYEYSGLTRSESEQSNTTVIIFALCIVFVYLILSALY 913

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              +   L  + ++   +     F  LFG   ++    +++ LIG    + +++ +     
Sbjct: 914  ESYLLPLAVVLSIPFGLAGAFLFTLLFGHNNDIYMQISLIMLIGLLAKNAILIVEFA--- 970

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFG 804
            +    T +  R          L   + T++A  + ++P+    G               G
Sbjct: 971  LDRRRTGMDIRHAAILGAKARLRPVLMTALAMIVGLIPLMFASGVGRNGNQTLGAAAVGG 1030

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +++     +F    +       + + + I
Sbjct: 1031 MLIGTLCQVFFVPTLFTIFQHIQERFSPI 1059



 Score = 42.4 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 95/265 (35%), Gaps = 14/265 (5%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + + +N       +R   +    G     + + +    V    Q       T V   
Sbjct: 245 YNNIIISSNTDGHTLYLRDVAKIELGGLSYAVSMESDGKPAVIGAVQQVSGSNATEVANG 304

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
           VKK+               V   ++  L   I +    + ++   + + ++I        
Sbjct: 305 VKKEFENQAKNFPPGMKMNVVVDVTDFLFASIEEVFFTLFLTLALVFLVVYIFLQDLRST 364

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  +  + + +  T  F  +FG   NL  ++A+L  I   V+D +VV + +   + +   
Sbjct: 365 LIPLIAVPVSLIGTFLFLWMFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLDIGYK 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVL---PMAVWG--GSVIGSFAIPMAFGIVVA 808
                 +   ++NE     +  S+   ++ +      + G  G+    F + MA  IV++
Sbjct: 425 RSLTASI--DAMNELSSAII--SITLVMAAVFVPVSFLSGTSGTFYREFGVTMAISIVIS 480

Query: 809 ASSSIFIAAPI-LLFIYDWRAKNAR 832
           A +++ ++  +  L +     K  +
Sbjct: 481 AINALTLSPALCALLLKPHNKKENK 505


>gi|77164639|ref|YP_343164.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrosococcus oceani ATCC
           19707]
 gi|254433621|ref|ZP_05047129.1| RND transporter, HAE1 family [Nitrosococcus oceani AFC27]
 gi|76882953|gb|ABA57634.1| Hydrophobe/amphiphile efflux-1 HAE1 [Nitrosococcus oceani ATCC
           19707]
 gi|207089954|gb|EDZ67225.1| RND transporter, HAE1 family [Nitrosococcus oceani AFC27]
          Length = 1059

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/626 (10%), Positives = 176/626 (28%), Gaps = 46/626 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  ++  +G +      L    +  FP   P               + +    
Sbjct: 9   RPKFALVISLVMLLVGGIA-----LSLIPVAEFPEITPP-------------QVTVSASY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S      ++ ++F      +  A  V  
Sbjct: 51  PGANAEGVEQSVAVPIEEQVNGVEGMSYMSSTSSSDGSYQLNITFEVGTDADIAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   N++L  +  +  L T  +    +++      +    ++  S        + +   
Sbjct: 111 RVAVANTQLPQEVIRQGLTTRKQSPNMLLIVNLISPKGSRDSLFLSNYASIYLQNPLARI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP RL  L  T + +       N        G      + 
Sbjct: 171 SGVGDVSQFGVQDYGMRVWLDPDRLTALGLTASDVVKAIEEQNIQASAGSLGAPPFTKAP 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY ++ K  ++ +              +    I                 +       
Sbjct: 231 QFQYTLQAKGRLATVE-------------EFEDIIVRASADGSLVQLKDIARLELGSQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L +      +       +              L     P     +      A   
Sbjct: 278 NAISKLNSQPAASIVVYQSPGANALQVANQIYAELERLAQSFPPDMEYHILYDTTQAVRA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   LV+ V F+ +   +  L+   +I ++++   A + +LG +  + ++
Sbjct: 338 SVQEVIKTLLITFVLVVAVTFLFLADWRSTLIPVCAIPVSLVGAFAAMYVLGFSANIITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             ++L IG+ VD +I+V E ++   R+N      +     +     +  + +  L   V 
Sbjct: 398 FAMILAIGIVVDDSIVVVENVQRIMRENALEAREATRRAMAEITGPVIATTLVLLAVFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINP 527
           + F     G   + FA+T+ +++ IS   A+++  A+   +        +  +++     
Sbjct: 458 VSFMPGITGQLYQQFAVTISVAVAISSLNALTLSPALCRLLLKPDSGQTHGLLRAFAWLV 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                      ++     R   + +     +               + KG + + V    
Sbjct: 518 NRLRNGYVRVCSLMLRHLRISLLLVLTFVIVTVFLFQRAPSGFLPTEDKGVLMVNVQLPD 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDG 613
              L+   + ++ +            
Sbjct: 578 GASLARTEAVIDEITQMTRDTAGITD 603



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 70/205 (34%), Gaps = 10/205 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            E +                         EL    +V  I +   +  Y+++      W  
Sbjct: 834  EAIAALEQVAAEALPEGYRIEWTGTSKEELAAGALVIYIFALAIVFAYLFLVAQYESWTL 893

Query: 693  ALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             LG I++++  +    L    L  ++ NL A   ++ LIG +    +++ +  ++     
Sbjct: 894  PLGVISSVVFALFGALLPVVMLPFLDNNLYAQIGIVMLIGLASKSAILIVEFAKE---RR 950

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S  +    +        + T+++  + V P+      G +   S    +  G++ A
Sbjct: 951  EQGLSTHEAALTAARLRFRAVLMTALSFILGVSPLLFASGAGAASRTSVGFVVFGGMLAA 1010

Query: 809  ASSSIFIAAPILLFIYDWRAKNARI 833
                IF    + +   D R    R+
Sbjct: 1011 TVIGIFFIPVLHVLYQDIRLSVPRV 1035



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 83/200 (41%), Gaps = 8/200 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 LE + +     +    + +T        +E+I+  ++  ++      +++    
Sbjct: 306 NQIYAELERLAQSFPPDMEYHILYDTTQAVRASVQEVIKTLLITFVLVVAVTFLFLA--- 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +        + G   N+  + A++  IG  V+D +VV + +++ M
Sbjct: 363 DWRSTLIPVCAIPVSLVGAFAAMYVLGFSANIITLFAMILAIGIVVDDSIVVVENVQRIM 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +    ++  R+   +++ E  G  + T++      +P++      G +   FA+ ++  +
Sbjct: 423 RE--NALEAREATRRAMAEITGPVIATTLVLLAVFVPVSFMPGITGQLYQQFAVTISVAV 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
            +++ +++ ++  +   +  
Sbjct: 481 AISSLNALTLSPALCRLLLK 500


>gi|187734732|ref|YP_001876844.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187424784|gb|ACD04063.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 1056

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/588 (12%), Positives = 163/588 (27%), Gaps = 47/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + L  +I  +G    L     +  +  +P  +P               + +   
Sbjct: 7   KRPILSICLSVIIVLLGAFSIL-----RLPISEYPDIIPP-------------SIQVTAT 48

Query: 62  EDDFV-NGFLQMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    ++  +  +   +    G+   +     N    + + F              
Sbjct: 49  YPGADCETVVKSIASPIEQQMSGVDGMSYMTSVNTNNGQMSMMILFEIGTEANMDQVLSY 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           L      S+L  +     +       +  ++      Q     +  +       +D I  
Sbjct: 109 LRYGQATSQLPSEVSALGVSLRKTSGLPALVVSLYSPQGTYDGLWLANYAYINMVDAIKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P ++  L  T   +       N        G +     
Sbjct: 169 VPGVGDVQVFGAGRYAMRIWLNPEKMAALNITARDVMLAVQAQNAVNPAGKIGAQPAPPD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               + V+    ++ +                  +I      +          +      
Sbjct: 229 QQLSFTVKAPGRLTSVKEFE--------------NIVVRGQDSSIVRVGDIARVELGSET 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +    ++    L  +      P    +V   +  A  
Sbjct: 275 YSLSSSVNGMPAASIGIYEAPGGNAIQLVDNIKDL--LKDTDMPPGMDYLVSLDSTLAVR 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                   T  I  GLV++V+F+ +   +  L+  F++ ++++       L G ++    
Sbjct: 333 AGIEDIVSTLVIALGLVVLVVFIFLQGWRGTLIPAFAVPVSIVGAFIAFPLFGFSINTIC 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI---TALIA 473
           + G+VL IGL VD  I+V E ++      +    +           I  + +      I 
Sbjct: 393 LMGLVLAIGLVVDDAIVVVEAVKNHISNGEKPLQATIAAMKEVSGPIVSTALVISCVFIP 452

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           T++L    G     FA+T+G+SI+IS F A+S+   +   ++R  K  SI          
Sbjct: 453 TLLLPGVTGKLFEQFAVTIGMSIIISAFCALSLSPTLSAGLLRGGKADSIP-----LLGP 507

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                   F +AR W V I           +        + F     +
Sbjct: 508 FFKLFNKGFNKARDWYVEICARLIRHMWLSILLLAAMTALLFPLAKLI 555



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 81/267 (30%), Gaps = 7/267 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                              K    + V       + V       L     S  +      
Sbjct: 226 PPDQQLSFTVKAPGRLTSVKEFENIVVRGQDSSIVRVGDIARVELGSETYSLSSSVNGMP 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                 Y+     A   V  +        +P        +      R  I   +  ++I+
Sbjct: 286 AASIGIYEAPGGNAIQLVDNIKDLLKDTDMPPGMDYLVSLDSTLAVRAGIEDIVSTLVIA 345

Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              +++ ++I  + W   L     + + I      F LFG   N   +  ++  IG  V+
Sbjct: 346 LGLVVLVVFIFLQGWRGTLIPAFAVPVSIVGAFIAFPLFGFSINTICLMGLVLAIGLVVD 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           D +VV + ++      +           ++ E  G  V T++      +P  +  G    
Sbjct: 406 DAIVVVEAVK---NHISNGEKPLQATIAAMKEVSGPIVSTALVISCVFIPTLLLPGVTGK 462

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPI 819
               FA+ +   I+++A  ++ ++  +
Sbjct: 463 LFEQFAVTIGMSIIISAFCALSLSPTL 489



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 70/257 (27%), Gaps = 24/257 (9%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             PV L  V +         +  QN        V              + E+  + +    
Sbjct: 793  DPVPLDSVINVTHGWAPEFLIRQNMFNSSQLNVTPAPGYSSGQVMNALEEVFAQTMP-SG 851

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                         +  + +    I       +  LI   +   W   +    T  + I  
Sbjct: 852  MGYDYSGMSYQEKQAQKGITIGMIFAASAVFVF-LILASLYESWSLPVAVFMTAPIAILG 910

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                  + G++ N+ +   ++ LI  +  + +++ +     ++              +  
Sbjct: 911  AFLALWITGLDLNIYSEIGLIVLIALAAKNAILIVEFAVLELRQ---GTDLLTATLDAAR 967

Query: 767  ETLGRSVYTSMAAFISVLPMA-----------VWGGSVIGSFAIPMAFGIVVAASSSIFI 815
              L   + TS+A  +  LP+A           V G  VIG     +  G+        F 
Sbjct: 968  IRLRPILMTSIAFIMGCLPLAVATGAGAAARQVVGIGVIGGMMTAVFIGV--------FF 1019

Query: 816  AAPILLFIYDWRAKNAR 832
                   I      + +
Sbjct: 1020 IPSFFYLIAKLARLDKK 1036


>gi|325298455|ref|YP_004258372.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides salanitronis DSM 18170]
 gi|324318008|gb|ADY35899.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides salanitronis DSM 18170]
          Length = 1038

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/638 (10%), Positives = 169/638 (26%), Gaps = 44/638 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   L    
Sbjct: 28  LTMLPIDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQELNGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDISTNADLAAVEIQNRIKLAESRLPAEVVQNGIEIEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++      +      I  S       +D +       +          +    DP++
Sbjct: 135 ASQLMTICLTSNDPKFDEIYLSNFATLNVLDLLRRIPGVGRVSNIGSRYYAMQIWVDPAK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + +   D                +       
Sbjct: 195 LANFGLTVQDVQNALKDQNRESAAGVLGQQPVTGLDVT--------------IPITAQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +            +                + 
Sbjct: 241 LSSASQFEEIVLRANPDGSLIRMRDVARVSLEAQSYNTESGINGGNAAVLGVYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        +           +          S      T      LV++V+F+ +
Sbjct: 301 MEVAERVKATMDEISRNFPDGMKYEIPFDMTTYISESIHEVYKTLFEALFLVIVVVFLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  L+   ++ +++I T   + + G +L + ++ G+VL IGL VD  I+V E +   
Sbjct: 361 QSWRATLIPTIAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGLVVDDAIVVVENVERI 420

Query: 442 NRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSIL 497
             +   S + +     +     +  +++      V + F     G   R F+IT+ +S+L
Sbjct: 421 MEEEHLSPYEATKKAMNGLTGALIATSMVLAAVFVPVSFLSGITGQLYRQFSITIAVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF--------MRARFWG 549
           +S   A+++   M   I+R +                 +     +          ++   
Sbjct: 481 LSTVVALTLSPVMCSLILRPQDPNKPKNRVFRTINKWLEKGNHSYVAGIIKITKHSKRTL 540

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V  S++     +            + +G   + +       L   R          +   
Sbjct: 541 VAFSMVIVFIFLLYRLIPTSFLPTEDQGYFTVELEMPEGTTLERTRIVTNRAIDYLMKNP 600

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           + +  ++               +  + +   K  +   
Sbjct: 601 SVEYVQSVAGTSPRVGTSQARSSLTVILKGWKERDNTT 638



 Score = 88.2 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 89/247 (36%), Gaps = 13/247 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  +       G    L        +++     ++    +I+   P     
Sbjct: 265 DVARVSLEAQSYNTESGINGGNAAVLGVYMLPGANAMEVAERVKATMDEISRNFPDGMKY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                      E I +    +  +   +++ +++    W   L     + + +  T GF 
Sbjct: 325 EIPFDMTTYISESIHEVYKTLFEALFLVIVVVFLSLQSWRATLIPTIAVPISLIGTFGFM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINET 768
            +FG   N+  +  ++  IG  V+D +VV    +R+ +   L     S  +   K++N  
Sbjct: 385 LIFGFSLNILTLLGLVLAIGLVVDDAIVVVENVERIMEEEHL-----SPYEATKKAMNGL 439

Query: 769 LGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  + TSM      +P+  + G  G +   F+I +A  ++++   ++   +P++  +  
Sbjct: 440 TGALIATSMVLAAVFVPVSFLSGITGQLYRQFSITIAVSVLLSTVVAL-TLSPVMCSLIL 498

Query: 826 WRAKNAR 832
                 +
Sbjct: 499 RPQDPNK 505



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 57/139 (41%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +         A+ G+E +      ++ L+G +  + +++ +  +  +
Sbjct: 889  SWSVPIAVLLSLPVAALGAYLGVAVCGLENDTYFQIGLVMLVGLAAKNAILIVEFAKDEV 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                +  S       + +      + TS+A  + ++P+ +    G +   +    + FG+
Sbjct: 949  ---ESGKSVIQAALHAAHLRFRPILMTSLAFILGMVPLVLASGPGSASRQAIGTGVFFGM 1005

Query: 806  VVAASSSIFIAAPILLFIY 824
            +VA +  IF+     + IY
Sbjct: 1006 IVAVTVGIFLVPFFFVMIY 1024


>gi|229523290|ref|ZP_04412697.1| RND multidrug efflux transporter [Vibrio cholerae TM 11079-80]
 gi|229339653|gb|EEO04668.1| RND multidrug efflux transporter [Vibrio cholerae TM 11079-80]
          Length = 1036

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 171/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLVPTQLTPSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|153213857|ref|ZP_01949063.1| multidrug resistance protein, putative [Vibrio cholerae 1587]
 gi|124115691|gb|EAY34511.1| multidrug resistance protein, putative [Vibrio cholerae 1587]
          Length = 1036

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 171/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIVACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|308064324|gb|ADO06211.1| preprotein translocase subunit SecD [Helicobacter pylori Sat464]
          Length = 525

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPI 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|289208788|ref|YP_003460854.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Thioalkalivibrio sp. K90mix]
 gi|288944419|gb|ADC72118.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Thioalkalivibrio sp. K90mix]
          Length = 1048

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 69/685 (10%), Positives = 174/685 (25%), Gaps = 46/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +       +A  +      +D++P  +P               +++    
Sbjct: 8   RPVLASVISILFV-----LAGLSSALLLPVDQYPDILPPK-------------VIVTASY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       + + +     +     +   +   ++ ++F      +  A  V+ 
Sbjct: 50  PGASAEAVAETVAAPIEATVDGVDNMAYMRSKSTDDGDMELIVTFEVGTDPDIAAINVSN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++G   +L        +         + +               S  + R    ++  +
Sbjct: 110 EVEGAMGRLPETVTGAGIAVEKRAPSMLQMITFTSSDGSLDNRFISDYVWRNVYAELRRA 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                +      +  +     P ++ +   T + +       N       FG   + ++ 
Sbjct: 170 PGVGDQTFFGAQIYSMRIWLQPDQMAEYDLTASDIRSAIQEQNEQYAAGQFGAEPMENAI 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V                    +  +    I                 +       
Sbjct: 230 DFTYAVTTPER-------------FSEEEEFEQVILRSAPDGSALRLGDVARVELGAHFY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +   T      +   L           +          
Sbjct: 277 NFDAKHNGQSTVPVGVYLEPGANALETARGVREILEELEPRFPDSLEYSIPFDTTIFIDQ 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+ V+++ +   +   V   ++ +++I TLA + +LG +  + ++
Sbjct: 337 SVQRVLLTLVQALILVVAVVYLFLQTFRATAVPIIAVPVSLIGTLAGMYVLGFSANMLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD+ I+V E        +      +         + I    +  +   V 
Sbjct: 397 FGLVLAIGIVVDNAIIVLENTERLMREQGMKAVDAAYQTVDEVATPIIAMTLVTIAVFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK------KMKSIDINP 527
           + F G   G   + FAIT+ +S+ IS   A+++  AM   ++  K        +  +   
Sbjct: 457 VAFIGGFSGQMYQQFAITIAVSVGISGIVALTLSPAMCARLLSDKPRRPAFPFRWFNSTF 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R        ++L     +      G     + +G +        
Sbjct: 517 DRFTAAYMVGVRFLLRRNFVGMGLFALLLVAIVVLFRIVPGGLVPQEDQGYVFAAAELPA 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L   R  ++ L    + + +      F        G           +         
Sbjct: 577 AASLQRTRDVMDRLGEEALEYDDTADVVAFSGMDLLSDGMKTYAGAAYVTLNDWSERRGD 636

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
             +                   I  
Sbjct: 637 DQSSDAVIDRLVADGERQPEATIRA 661



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 90/242 (37%), Gaps = 6/242 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V          +   ++       +        +++   R +  + +++    P S   
Sbjct: 265 DVARVELGAHFYNFDAKHNGQSTVPVGVYLEPGANALETARGVREILEELEPRFPDSLEY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           +          + +++ ++ ++ + I ++  +++  + +      I  + + +  TL   
Sbjct: 325 SIPFDTTIFIDQSVQRVLLTLVQALILVVAVVYLFLQTFRATAVPIIAVPVSLIGTLAGM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   N+  +  ++  IG  V++ ++V +       +    +   D   ++++E    
Sbjct: 385 YVLGFSANMLTLFGLVLAIGIVVDNAIIVLE--NTERLMREQGMKAVDAAYQTVDEVATP 442

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++      +P+A    + G +   FAI +A  + ++   ++ ++  +   +   + 
Sbjct: 443 IIAMTLVTIAVFVPVAFIGGFSGQMYQQFAITIAVSVGISGIVALTLSPAMCARLLSDKP 502

Query: 829 KN 830
           + 
Sbjct: 503 RR 504



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/154 (13%), Positives = 53/154 (34%), Gaps = 6/154 (3%)

Query: 682  IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            I      +W   L  +  +   I   L    L G E  +     +L L+  +  + +++ 
Sbjct: 883  ILAAQYERWTLPLAVLMAVPFAIFGALVAVWLTGQENGIYFQIGLLVLVSLAAKNAILIV 942

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFA 798
            +            +S  D   ++        + T+M+  + V+P+ +    G +   +  
Sbjct: 943  EFA---QNKRNEGLSLFDASVEAARLRFRPIMMTAMSFILGVVPLVLATGAGANSQHAIG 999

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            I +  G++ A   ++         I     + ++
Sbjct: 1000 IGIIGGMLSATFLALLFVPLFYFVISSGMERLSK 1033


>gi|194290445|ref|YP_002006352.1| multidrug efflux transporter acrb/acrd/acrf family, nolg homolog
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224280|emb|CAQ70289.1| Multidrug efflux transporter AcrB/AcrD/AcrF family, nolG homolog
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1078

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/549 (10%), Positives = 145/549 (26%), Gaps = 38/549 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN     ++      +GL         +  +D+FP       +                 
Sbjct: 9   RNPVLATMMMMAFIVVGLFS-----YQRLPVDQFPDITFPVVV---------VQTEYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E+ + +           Q  + + + F  S      A  V   +  
Sbjct: 55  APESVESDVTRKVEEIVNTISGIDEIFSHSYQGTSVVVIKFDLSVDVGQAAQDVRDKIAL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNN-IDQVISHAIEQSMEIIRQRIDQIGISEST 180
           +  +   + K   ++     +  I     +          E +    +    ++      
Sbjct: 115 IRPQFRDEVKDPRVLRYDPSDAPIFYLSVSNAPGASRSQRELTTIADQIVRKRLETVRGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      ++     P++L  L     ++       N                   +
Sbjct: 175 GAINLVGGTRREVEIRIRPAQLEALGIGVDQVMNAIRNENQELPAGELRSSAAETVVQIK 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V                            I       +        ++          
Sbjct: 235 GRVPTP--------------------DAFRQIIVARRAGQPVTLGEIADVRDGQEEQESL 274

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L                +   T++    +   +R          V          S  
Sbjct: 275 ALLDGKRALFLSVVKAQGQNTVDTVDGLVRMTDEVRKLVPAGVQLNVVNDTARGIRSSVK 334

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T    A L + ++F+ +   +  ++   ++ + +I T  ++ L G TL + ++  +
Sbjct: 335 EVRSTLLEGAFLTVAIVFLFLGSWRSTVITGLTLPIALIGTFGVMYLCGFTLNVITLMAL 394

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL +D  I+V E I   N   +    +   G +     +  +  + +   + + F 
Sbjct: 395 SLCVGLLIDDAIVVRENIVRHNLMGKDHRTAALDGTNEIGLAVLATTFSIVAVFLPVGFM 454

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G     F IT+  ++LISMF + ++   +           + +        +    
Sbjct: 455 GGIIGRFFHQFGITVVAAVLISMFVSFTLDPMLSSVWHDPDLHGTGNKRSWYGRTVGRLL 514

Query: 538 IAIQFMRAR 546
                   R
Sbjct: 515 DWFSASMDR 523



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + I       W   +    TL + +  T G   L G   N+  + A+   +G 
Sbjct: 341 LEGAFLTVAIVFLFLGSWRSTVITGLTLPIALIGTFGVMYLCGFTLNVITLMALSLCVGL 400

Query: 733 SVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+ +        R       NE     + T+ +     LP+   GG
Sbjct: 401 LIDDAIVV----RENIVRHNLMGKDHRTAALDGTNEIGLAVLATTFSIVAVFLPVGFMGG 456

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      F I +   ++++   S  +   +    +D
Sbjct: 457 IIGRFFHQFGITVVAAVLISMFVSFTLDPMLSSVWHD 493



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 86/295 (29%), Gaps = 12/295 (4%)

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
                         +                +   ++   D S     L  +     +   
Sbjct: 750  SWRAPDDENYDVRVRLPKDARTGMADLSALMIASSHANADGSPKMVPLRQIAELVPTTGA 809

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                +  L R      +   ++        K                G          G 
Sbjct: 810  NQISRRDLNREVELTANVAGRSAGEVARDIKAALDGVNWPAGYKYRFGGSTKSMNESFGY 869

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
                ++   + IY+ +      ++  +  +T+L L +        LFG   N+ ++   +
Sbjct: 870  AVSALALAVIFIYMILASQFASFFQPIAIMTSLPLTLAGVFAALLLFGSTLNMFSIIGFI 929

Query: 728  TLIGYSVNDKVVVYDRMRKNMKL------YTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
             L+G    + +++ D   +  +           +S    + ++    L   + T++A   
Sbjct: 930  MLMGLVTKNAILLVDFANQARQGGVDSAYGREPLSREAALVEAARVRLRPILMTTLAMIF 989

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++P+A     G          +  GI+ ++  ++ +   I  ++ D+ A   R+
Sbjct: 990  GMVPLAFSLGEGAEQRAPMGQTVIGGIITSSVLTLVVVPVIYTYLDDFGAWLRRL 1044


>gi|22297746|ref|NP_680993.1| preprotein translocase subunit SecF [Thermosynechococcus elongatus
           BP-1]
 gi|22293923|dbj|BAC07755.1| protein-export membrane protein [Thermosynechococcus elongatus
           BP-1]
          Length = 317

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/283 (28%), Positives = 155/283 (54%), Gaps = 10/283 (3%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
             + IS +     + L         + F+         ++P+D+ VVR  L    +G+ S
Sbjct: 25  VAMAISWVSLGSPLRLGLDFIGGTRLQFELACSATHNCSQPIDIDVVRQVLNQQGLGNSS 84

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            Q       + V ++  P     +TR+ + +++KI +  P       E VGP + +E++R
Sbjct: 85  LQIVGE---YGVSIRTVPLSVDQRTRLSDALRQKIGDFDP--QKTQIETVGPTLGKEILR 139

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAV 723
            G++ +++S I + IY+ +RF++ +A  A+  L+ D+  T G FA+     G+E +   +
Sbjct: 140 SGLLALLVSFIGITIYLTLRFQFDYACFALVALVHDVLVTTGIFAILALVAGVEIDSLFI 199

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            A+LT+IG+SVND VV+YDR+R+ +KL    +  ++++D+++ +TLGRS+ T++   + +
Sbjct: 200 VALLTIIGFSVNDTVVIYDRVRETLKLNP-ELGIQEVVDQAVVQTLGRSINTTLTTLLPL 258

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           + + ++GG  +  FA+ +  G    A SSIFIA+ +L +  D 
Sbjct: 259 ITILLFGGDTLRYFALALLIGFTTGAYSSIFIASTLLAWWRDR 301


>gi|88607514|ref|YP_505834.1| preprotein translocase subunit SecF [Anaplasma phagocytophilum HZ]
 gi|88598577|gb|ABD44047.1| protein-export membrane protein SecF [Anaplasma phagocytophilum HZ]
          Length = 305

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 142/279 (50%), Gaps = 2/279 (0%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              F++     + +S+L ++ S+ L++  G+N G DF GG+ +          +     +
Sbjct: 11  NFNFVKWGKVALIMSVLLTLGSLVLIYVRGINLGTDFAGGVVVDFQVADTSVDAERIKCV 70

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            +            GE      + ++ G S      ++ VK  + E+    + +  + VG
Sbjct: 71  LAGAGLGSVSVQNFGEDPQEFMVVFKGGASSGSHVAVDKVKGALGELGE-ISYKKVDYVG 129

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
            +I    +++GI+ V+ S + M  Y+ +RF+W FA+G ++ L+ D+  T+G  +  G+EF
Sbjct: 130 AQIGLAQVKEGIIAVLGSLLCMFFYLCLRFRWQFAVGGVSALVHDVIITMGMVSATGLEF 189

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           +L  +AA+L +IGYSVND VV+YDR+R+ M    T      +++  IN TL R++ TS  
Sbjct: 190 SLPVMAAILMVIGYSVNDSVVIYDRVRELMVRSETK-DMVQIVNTGINTTLSRTLLTSGT 248

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             ++ LP+ +     +    I   FG+VV   SSIF++ 
Sbjct: 249 TMLAALPLMLLCEGAVQDLGIIAFFGVVVGTYSSIFVST 287


>gi|91784060|ref|YP_559266.1| RND family hydrophobe/amphiphile efflux pump [Burkholderia
           xenovorans LB400]
 gi|91688014|gb|ABE31214.1| hydrophobe/amphiphile efflux pump, RND family [Burkholderia
           xenovorans LB400]
          Length = 1084

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/614 (13%), Positives = 155/614 (25%), Gaps = 48/614 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +IC IG++  +        +D +P   P               + +    
Sbjct: 8   RPVFAWVIPILICIIGVISMM-----HLGIDSYPDVAPP-------------QVTVTATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      +   L     +  FS     N    ITLSF      +    +V  
Sbjct: 50  PGANAATMESTVTQVIEQQLTGIDNLLYFSSTSNSNGTVTITLSFETGTNPDIAEVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L     +  +V        ++            A   +  I  Q    I   
Sbjct: 110 KVNLAQPLLPAQVTQQGVVVAKASPDILMFLSLQSSNPAIDAARLNDIIASQIQPVIARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 L        +    +P +L+    +T ++       N        G        
Sbjct: 170 NGVGNTLSLGS-EYAVRIWLNPDKLQGYGLSTTQVLHAVSAQNAQFATGSLGSDPAVKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V      S                +    I                 I       
Sbjct: 229 VLTASVSGDTLFS-------------SLKQFRDIILLTNSNGTVVRLSDVARITFGAQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               V                 +     +      A L           V          
Sbjct: 276 GLASVYQGKAAGGMGIYLLPGANALAVAKAVKAEMATLAKDLPAGVTWNVPYDTTPFISA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+ + +   +  ++    I + ++ T   LS L  TL   ++
Sbjct: 336 SIADVVRTLLEAIALVFVVMLIFLQNLRATIIPTLVIPVALLGTFIGLSALHFTLNQLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +     +       +      +    I    +      + 
Sbjct: 396 FGMVLAIGIVVDDAIVVIENVERIMSEEHLEPKEATRKAMGQITGAILAITVVLAAVFIP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDIN 526
                   G     FA+T+ +S+L+S F A+S   A+   I++           +  D  
Sbjct: 456 SALQPGATGIIYAQFALTIAVSMLVSAFLAMSFTPALCAAILKPTHVEKKNFIFRWFDKG 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      I      A  W V   +L  +     +         + +G +   V   
Sbjct: 516 LARINERYARQIGGAVRHAPRWMVVFVLLSVLAGFLYVHLPTSFVPDEDQGFMLALVNLP 575

Query: 587 RPVDLSVVRSNLES 600
               L      +++
Sbjct: 576 TGATLQRTEEVMDA 589



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 79/217 (36%), Gaps = 8/217 (3%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
              +   G   +L+        + A    +  + K +   V  +   +T         ++
Sbjct: 281 YQGKAAGGMGIYLLPGANALAVAKAVKAEMATLAKDLPAGVTWNVPYDTTPFISASIADV 340

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           +R  +  + +  + MLI++         +     + + +  T    +      N   +  
Sbjct: 341 VRTLLEAIALVFVVMLIFLQ---NLRATIIPTLVIPVALLGTFIGLSALHFTLNQLTLFG 397

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  IG  V+D +VV + +     +    +  ++   K++ +  G  +  ++      +P
Sbjct: 398 MVLAIGIVVDDAIVVIENV--ERIMSEEHLEPKEATRKAMGQITGAILAITVVLAAVFIP 455

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            A+  G+       FA+ +A  ++V+A  ++     +
Sbjct: 456 SALQPGATGIIYAQFALTIAVSMLVSAFLAMSFTPAL 492



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 77/247 (31%), Gaps = 10/247 (4%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +     V LS V      +    +   N       +           A   +  +V  +
Sbjct: 820  SLSPYNMVPLSSVVKTHWDVGPVALPRYNGYSAIEIVGNPAPGYSTGQAMQTLQHIVDTR 879

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
            +      +                    I+ +++  + +     +   W   +  +  + 
Sbjct: 880  LPP-GFAADWTGQSYQEVLSGNSATLLMILSIVVVFLCLA---ALYESWSIPVAVLLVVP 935

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L +   L F  L GI  ++     ++T+IG +  + +++ +     +      ++  D +
Sbjct: 936  LGMLGMLTFCLLRGIPNDIYFKIGLVTVIGLAAKNAILIVEFA---VDGQARGMTLYDAV 992

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +    L   + TSMA  + V P+ +    G S        +  G++ A    + +   
Sbjct: 993  LTAGKLRLRPILMTSMAFILGVFPLVISTGAGASSRHEIGTGVIGGMLFATVLGLLLIPV 1052

Query: 819  ILLFIYD 825
              + +  
Sbjct: 1053 FYVVVRR 1059


>gi|223935013|ref|ZP_03626932.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [bacterium Ellin514]
 gi|223896466|gb|EEF62908.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [bacterium Ellin514]
          Length = 1053

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 72/658 (10%), Positives = 170/658 (25%), Gaps = 27/658 (4%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           Q  + +FP+ +P   I                 + + +   +    ++  S +       
Sbjct: 29  QLPISQFPNIVPP-EIR--------IQTTYLGADAETLEQSVATPIEQQMSGVDNMNYMY 79

Query: 89  F-SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
             +      ++ ++F              +      S+L +D +   +         ++L
Sbjct: 80  SINANNGVMRLVVNFDIKTDPNIDQVLTQIRENQAESQLPLDVRNFGISLLKSPTTPLML 139

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
                       I  +       +DQ+   +              +     P +L +L  
Sbjct: 140 VSLFSPNETHDDIFLANYAYINMVDQLNRVKGVSNIQVFGAGQYAMRFWVKPDQLAKLNI 199

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           T  ++       N        G           Y V  +  +                 +
Sbjct: 200 TINEIIVAVNNQNTVNPAGQIGGPPTPKGQEFTYAVSAQGRL-------------QTERE 246

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
               I                 I     V      L                +     + 
Sbjct: 247 FGAIILRANPDGSVVQLKDVARIELGAQVYSLKGRLNGKPAAVLAIYQLPGSNALDAADG 306

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
              L A L+         +V      A          T      LV+IV+F+ +   +  
Sbjct: 307 VKKLLAELKQRFPSDLDFVVSLDTTRAVSEGMKEIVKTLWEALLLVVIVVFIFLQGWRAT 366

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           L+   ++ +++I T  L  ++G ++   S+ G+VL IGL VD  I+V E +     +   
Sbjct: 367 LIPLLAVPVSLIGTFMLFPIVGFSINTLSLFGLVLAIGLVVDDAIVVVEAVERHIEEGLD 426

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAI 504
              +           +    I      +   F     G   + FA+T+ +S+++S F A+
Sbjct: 427 PKAAALKAMEEVSGPVIAIAIILAAVFIPTIFISGITGQLYQQFAVTIAISVILSAFNAL 486

Query: 505 SIVRAMMIFIIRYKKMKSID-INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           ++  A+   ++R +             F          ++R     +    L  +    +
Sbjct: 487 TLSPALAAKLLRPRTKSRGPLQRFYDSFNRAFTHATHGYVRLSGLLMRKVALSLLLLAGV 546

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                          +         +++ +  +                 + +  V+   
Sbjct: 547 TILALFLGKRIPTSFLPEEDQGYVYLNVQLPLAASLDRTDEVCKQVENILKNSPGVQYYT 606

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                   + V           +     +          +  + K +  +  +     
Sbjct: 607 TVMGFSLLSGVQSTYNAFFFVTLKPWGERTKPEEQYAAIKAHLNKALSAIPAATAFAF 664



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 56/453 (12%), Positives = 121/453 (26%), Gaps = 34/453 (7%)

Query: 404  LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC--SLDMGFSRAYS 461
            +L          ++ G  L  G+    N      ++    + +      ++    ++A S
Sbjct: 595  ILKNSPGVQYYTTVMGFSLLSGVQSTYNAFFFVTLKPWGERTKPEEQYAAIKAHLNKALS 654

Query: 462  TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             I  +      A       G G+  GF   +       +     + R + IF+   +K  
Sbjct: 655  AIPAA---TAFAFPPPAIPGVGSSGGFTFILEDRSGQDLA---FLNRNVNIFMEAARKRP 708

Query: 522  SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +     +    +P                            +  + +NY   F    Q+
Sbjct: 709  ELASVTTTHLPNVPQVFMNLDRDKALKQGVNLSEVYRTMQAFMGGYFINYFNRFGRQWQV 768

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-------------------Q 622
             V A            L  ++                 R+                    
Sbjct: 769  YVEAEDEYRAKAENVGLFYVRNSQNQSVPLSSLTKVESRIGPEFIMRYNAYRSAQINGNA 828

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                 S   T+ LE V  +                  K ++ +    +  + I  +  LI
Sbjct: 829  APGYSSSQATKALEEVFAQTMPREMGFDYLGISFQEQKAAQGVKPSVVFALSIVFVF-LI 887

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
               +   W      + T  + +            E N+     ++ LIG +  + +++ +
Sbjct: 888  LAALYESWSLPFSVLLTTPIAVFGAFAALLARRYENNVYVQIGLIMLIGLAAKNAILIVE 947

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
              +     Y    S  D             + TS A  +  +P+ +    GG    +   
Sbjct: 948  FAKSE---YEKGRSITDAALTGARIRFRPILMTSFAFVLGCVPLWLASGSGGVARKTLGT 1004

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +  G++ A    IFI       +     + ++
Sbjct: 1005 VVIGGMLSATLLGIFIIPVSFYVVESLMQRFSK 1037



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 86/204 (42%), Gaps = 9/204 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               ++L  +K++    +      +T     +  +E+++     +++  I + I++    
Sbjct: 305 DGVKKLLAELKQRFPSDLDFVVSLDTTRAVSEGMKEIVKTLWEALLLVVIVVFIFLQ--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T   F + G   N  ++  ++  IG  V+D +VV + +    
Sbjct: 362 GWRATLIPLLAVPVSLIGTFMLFPIVGFSINTLSLFGLVLAIGLVVDDAIVVVEAV---E 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFGI 805
           +     +  +    K++ E  G  +  ++      +P + + G  G +   FA+ +A  +
Sbjct: 419 RHIEEGLDPKAAALKAMEEVSGPVIAIAIILAAVFIPTIFISGITGQLYQQFAVTIAISV 478

Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829
           +++A +++ ++  +   +   R K
Sbjct: 479 ILSAFNALTLSPALAAKLLRPRTK 502


>gi|299139394|ref|ZP_07032569.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
 gi|298598663|gb|EFI54826.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
          Length = 1147

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/551 (11%), Positives = 148/551 (26%), Gaps = 38/551 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L + +  +GL            +   P A                       
Sbjct: 9   QRPVATALLMAAVLVVGLAA-----YSSLPVSALPQADYPTIQ---------VQTFYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +     +        +     + I L FA +   +    +V   +  
Sbjct: 55  SPEVMSSAVTAPLERQFGQVAGLTQMTSTSSDGSSVIVLQFALTLNIDVAEQEVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     + + +    + VL+   +        +    +  +   +I       
Sbjct: 115 AQGYLPTDLPVPPVYSKSNPADAPVLT-LALTSETMPLSKVEDLVDTRLAPKISQLSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +  + +P  L         +       + +     F             
Sbjct: 174 LVTISGGQKPAVRIQANPVALASYGINLEDLRTALTDTSVNSAKGTFDGPAQNFQINAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                           D+                 I   +       
Sbjct: 234 QLLSS--------------------DGYRDVIVAYKDGAPVMLTDVAKITDGVENTKLAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +   +    ++    L   L+A         V          S   
Sbjct: 274 WMNETPAVILNIQRQPGANTIAVVQEIEQLLPKLQASLPVSIKLHVLTDRTTTIRASVKD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   LV++V+F+ +      ++   ++ L+++ TLA + LLG +L   ++    
Sbjct: 334 VEFELMLTIALVVMVIFVFLRNIAATIIPAVAVPLSLVGTLAAMHLLGYSLNNLTLMAFT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I        +   +   G  +   TI    I+ +   + L F G
Sbjct: 394 ISTGFVVDDAIVMIENISRYLEDGMAPMEAALKGAEQIGFTIVSLTISLIAVLIPLLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ ++ILIS   ++++   M   ++ +      +        L    I
Sbjct: 454 DIVGRLFREFAVTLSITILISALVSLTLTPMMSSRMLHHTPPSEQNRFYRWTEDLFDRII 513

Query: 539 AIQFMRARFWG 549
           A      R+  
Sbjct: 514 AAYGRSLRWVL 524



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/275 (12%), Positives = 97/275 (35%), Gaps = 12/275 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S   +       F    N  +    G +  ++A +     ++    +     + +   
Sbjct: 213 VNSAKGTFDGPAQNFQINANDQLLSSDGYRDVIVAYKDGAPVMLTDVAKITDGVENTKLA 272

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +   V L  Q         V++ +++ + ++     +     V    +  +     
Sbjct: 273 AWMNETPAVILNIQRQPGANTIAVVQEIEQLLPKLQASLPVSIKLHVLTDRTTTIRASVK 332

Query: 671 -----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                + + I+ + M+I++++R      +     + L +  TL    L G   N   + A
Sbjct: 333 DVEFELMLTIALVVMVIFVFLR-NIAATIIPAVAVPLSLVGTLAAMHLLGYSLNNLTLMA 391

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
                G+ V+D +V+ + +    +     ++  +   K   +     V  +++    ++P
Sbjct: 392 FTISTGFVVDDAIVMIENI---SRYLEDGMAPMEAALKGAEQIGFTIVSLTISLIAVLIP 448

Query: 786 MAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +   G   G +   FA+ ++  I+++A  S+ +  
Sbjct: 449 LLFMGDIVGRLFREFAVTLSITILISALVSLTLTP 483



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 92/220 (41%), Gaps = 6/220 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +  +V + +      A  + ++ V+K  +++   +++Q +        + +     + +
Sbjct: 912  GQFPVVTISFNVAPGAALGQAVDAVEKTQSDLHMPASVQTSFQGTAAAYKAIGSNEAILI 971

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + +A+ I + I ++ +   +  ++TL       L    LF  +F++ AV  ++ LIG 
Sbjct: 972  LAALVAVYIVLGILYESFIHPITILSTLPSAGVGALLALRLFHQDFDIIAVIGIILLIGI 1031

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + ++V D   +     T   S  + I ++        + T++ A  + +P+A     
Sbjct: 1032 VKKNGIMVVDFALE--AERTRGKSSVEAIFEASQLRFRPILMTTLCALFAGIPLAFGSGI 1089

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G  +     I M  G++V+   +++    I +F      +
Sbjct: 1090 GSELRRPLGIAMVGGLLVSQILTLYTTPVIYVFFDRLAQR 1129


>gi|254225757|ref|ZP_04919363.1| multidrug resistance protein, putative [Vibrio cholerae V51]
 gi|125621765|gb|EAZ50093.1| multidrug resistance protein, putative [Vibrio cholerae V51]
          Length = 976

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 171/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFKYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498


>gi|302382598|ref|YP_003818421.1| acriflavin resistance protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302193226|gb|ADL00798.1| acriflavin resistance protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 1077

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/497 (12%), Positives = 136/497 (27%), Gaps = 28/497 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   ++C IG             +   P   P                     
Sbjct: 9   RRPVLAAVAAIVLCVIGAAAFFF-----LPVRELPDVDPPIV---------SVSTSYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++       S R  ++ +T+ FA  R  +  A  V   +  
Sbjct: 55  SAEVIENRITEPIEQQVAGIQGVERITSSSRDGRSNVTIEFALDRDIDVAASDVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    +   +         I++       +    +E +    R  +D++       
Sbjct: 115 VQGRLPDQAQPPEVSKADSDSQPIMILFLRSSSMNR--LELTDYADRYLLDRLATVPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    D   +     T + +       N               +     
Sbjct: 173 QAQIYGEQRYAMRIWLDADAMGARGLTVSDVEQSLSSQNVELPAGALESTDKDYTVRVAR 232

Query: 242 LVEDKVEIS------------GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                 + +            G        +     +      +     +          
Sbjct: 233 TYARAQDFAQLPIGTTGSASIGSAGASGAVSTGSIPNGSGASGALQPRASYVTRLGDIAR 292

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           + +  A                  + +AQ +     +    L   +R         +V  
Sbjct: 293 VEEAPAEARRLFRGNGLDQIGLAVTRQAQSNDLEISKGVEALVEEIRPSLPDDTELVVGS 352

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
            N      +      T  I   LV +V F+ +   +  L+      + ++ T  +L+ LG
Sbjct: 353 DNSVFTSHAIDEVWITIGISMALVALVNFIFLGSLRAALIPSIVAPICLLSTFIVLAPLG 412

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            +L L ++  +VL IGL VD  I+V E I+      +    + + G  + +  +  + IT
Sbjct: 413 FSLNLLTLLALVLAIGLVVDDAIVVVENIQRRLDHGEPPLVAAERGTRQVFFAVIATTIT 472

Query: 470 ALIATVVLFFFGGGAVR 486
            L     L F  G   R
Sbjct: 473 LLSVFAPLLFLPGYVGR 489



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 73/218 (33%), Gaps = 4/218 (1%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L   A+    L  +    E+       F+    ++  L   +    + +  ++ +E + +
Sbjct: 277 LQPRASYVTRLGDIARVEEAPAEARRLFRGNGLDQIGLAVTRQAQSNDLEISKGVEALVE 336

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
           +I   +P  T           +   I +  + + IS   + +  +I       AL     
Sbjct: 337 EIRPSLPDDTELVVGSDNSVFTSHAIDEVWITIGISMALVALVNFIFLGSLRAALIPSIV 396

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
             + +  T    A  G   NL  + A++  IG  V+D +VV + +    +          
Sbjct: 397 APICLLSTFIVLAPLGFSLNLLTLLALVLAIGLVVDDAIVVVENI---QRRLDHGEPPLV 453

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
             ++   +     + T++       P+    G V   F
Sbjct: 454 AAERGTRQVFFAVIATTITLLSVFAPLLFLPGYVGRLF 491



 Score = 47.4 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 58/138 (42%), Gaps = 8/138 (5%)

Query: 696  AITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            A+  L + +    G F LF  G   N+ +   ++ LIG +  + +++ +      +L   
Sbjct: 915  AVIMLTVPLAAAGGLFGLFMAGSSLNIYSQIGLIILIGIAAKNGILIVEFAN---QLRDQ 971

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
              S  + I +S +  L   + TS+A     LP+A+W   G     +  + +  G + +  
Sbjct: 972  GRSITEAIIESSSLRLRPIIMTSIATAFGALPLALWQGAGEGSRQTIGVVIFTGAMFSTL 1031

Query: 811  SSIFIAAPILLFIYDWRA 828
             ++F+   I   +  +  
Sbjct: 1032 LTLFVVPVIYGALARFTK 1049


>gi|239993774|ref|ZP_04714298.1| RND multidrug efflux transporter MexF [Alteromonas macleodii ATCC
           27126]
          Length = 936

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/697 (11%), Positives = 188/697 (26%), Gaps = 50/697 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                + 
Sbjct: 10  RPIFAGVLSLLIFIGGAIAVW-----QLPITEYPEVVPPTVVVT-------------ANY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +  +  L   +   E +   S +   +    +T++FA     +     V  
Sbjct: 52  PGANPEVIAETVATPLEQEINGVENMLYMSSQATSDGRMTLTITFAIGTDPDEATTLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +VT        ++            +  S    +   D++   
Sbjct: 112 RVNRATPRLPQEVQRLGVVTEKSSPDLTMVVHLTSPDNRYDMLYLSNYADQFVKDELARI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    DP++L  L      ++      N        G +    + 
Sbjct: 172 NGVGQVRLFGAGEFSMRVWLDPNKLAALQLNPGDVAAAIADQNQQAAAGSLGAQPT-GTS 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q L+  +  +                 +    I                 I       
Sbjct: 231 EFQLLINVRGRLKDEA-------------EFENIIVKSGENGEITRLKDVARIELGSEFY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               ++                +     +      A L           +         G
Sbjct: 278 ALRSLINNNPAAAVPVFQAPGSNAIQISDDVRARMAELSKAFPEGLEYEIAYDPTVFVRG 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   ++ ++++ T A + L+G +L   S+
Sbjct: 338 SIEAVISTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPISLVGTFAFMQLMGFSLNALSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IG+ VD  I+V E +     + ++ F +           I  + +      V  
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERNISEGKAPFEATVQAMKEVTGPIIATTLVLAAVFVPT 457

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIF----------IIRYKKMKSID 524
            F     G   + FA+T+ +S +IS   ++++  A+              +     K   
Sbjct: 458 AFMSGLTGQFYKQFALTITISTVISAINSLTLSPALSALLLKPHGKANDWLTRLMDKVFG 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               S F    D  + ++  A    +  S +  +    LL      +     G +     
Sbjct: 518 RFVFSPFNRFFDRNSKRYTGAVGGLIRKSSIIMVLYAGLLGLTYFQFANTPTGYVPPQDK 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                   +  +         I   +    ++  V                      +  
Sbjct: 578 QYLVAFAQLPNAASLDRTEEVIREMSRIAMEHPGVEDAIAFPGLNINGFTNSPSSGVLFA 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
            +     + T  +        + +    +  + +A+ 
Sbjct: 638 TLTDFDKRTTPDLSGGAIAAQLNQNFGSIKGAFVAIF 674



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/128 (18%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 364 WRASIIPLVAVPISLVGTFAFMQLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIS 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP--MAVWG--GSVIGSFAIPMAFGI 805
                 +  +   +++ E  G  + T++    +V      + G  G     FA+ +    
Sbjct: 424 E---GKAPFEATVQAMKEVTGPIIATTL-VLAAVFVPTAFMSGLTGQFYKQFALTITIST 479

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 480 VISAINSL 487


>gi|170750862|ref|YP_001757122.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170657384|gb|ACB26439.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 1052

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 76/621 (12%), Positives = 173/621 (27%), Gaps = 51/621 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC  G L       P   + ++P   P               + L    
Sbjct: 8   RPVFAWVVALFICLGGALAI-----PNLPVAQYPVIAPP-------------SIALSTAY 49

Query: 63  DDF-VNGFLQMYSDELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
               V       +  +   L     I  F           IT +F         + +V  
Sbjct: 50  PGASVESLYIGTTRLIEDELNGAANIMSFESTTDSFGSVNITATFQPGTDPSLASVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  ++       ++ +            +     +IR  I++I   
Sbjct: 110 RLKRVEARLPAEVRQQGILVEEASAATLNIITLVSTDGSMDEVGLGDFLIRNVINEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +LR L  + + ++      N        G +      
Sbjct: 170 PGVGRATLY-STERSLRVWVDPDKLRGLSLSASDVTDAIRNQNVQVASGSVGAQPSPTRQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  K ++                 +    +                 I       
Sbjct: 229 ALTVPIIVKGQLG-------------TIEEFGAIVLRANPDGSNVRLRDVARIELGGDAY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +   T +        L     P     +      A   
Sbjct: 276 QFSTRLNGGPAAGISVTLAPDGNALETAKAIRAKMVELSQFFPPDLKWDIPYDITPAVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + + ++ T+ ++ + G ++ + ++
Sbjct: 336 SIEKVLHTLVEAVVLVFLVMFLFLQNIRYTLIPTIVVPIALMGTVTVMWISGFSVNVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    N +      +      +    I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMNEEGLPPKEATKKAMGQITGAIIGITLVLVAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------I 523
           + FF G      R F+I M  SI  S   A+S+  A+    ++  +              
Sbjct: 456 MAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPALCATFLKPIEKGHGHAKGGVFGMF 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +              A    ++    +    L +  +   +        ++ +G   + V
Sbjct: 516 NRFVDRETARYGRGTAAFIRKSGRVMLVYVALVAGTAYAFVNLPEGFLPVEDQGFFTVDV 575

Query: 584 LANRPVDLSVVRSNLESLQIG 604
                   +  +  +  ++  
Sbjct: 576 QTPPGASYNRTQEAVRKVEEH 596



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 87/237 (36%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V            S +   G    +       G+++   + +     ++++  
Sbjct: 258 SNVRLRDVARIELGGDAYQFSTRLNGGPAAGISVTLAPDGNALETAKAIRAKMVELSQFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +            I K +  ++ + + + + +++  +   + L     + + + 
Sbjct: 318 PPDLKWDIPYDITPAVEASIEKVLHTLVEAVVLVFLVMFLFLQNIRYTLIPTIVVPIALM 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T+    + G   N+  +  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTVTVMWISGFSVNVLTMFGMVLAIGILVDDAIVVVENV--ERIMNEEGLPPKEATKKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  G  +  ++      +PMA + GSV      F+I M   I  +A  ++ +   +
Sbjct: 436 GQITGAIIGITLVLVAVFIPMAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPAL 492



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 71/232 (30%), Gaps = 9/232 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              V       + +         +G      F+G ++     +  PG +            
Sbjct: 784  YAVKNATNTMVPMSSFAELKWSMGPSQIVGFNGYQSVRFTGEPNPGYTSGDAIAEMERLM 843

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                               +   +      + V+I  + +     +   W   +  +  +
Sbjct: 844  LQLPKGFGYAWTGQSYQEKQAGSQASLLLALSVLIVFLCLA---ALYESWAIPVSVMLVI 900

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L +   +    L G+  ++     ++T+IG S  + +++ +  R   K      S    
Sbjct: 901  PLGVIGAVAAVYLRGMPNDVYFKIGLITIIGLSAKNAILIVEFARDLWK---PGTSVVRA 957

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAA 809
              ++        V TS+A    V+P+A+  G+   S       +  G++ A 
Sbjct: 958  AIEAATLRFRPIVMTSLAFIFGVVPLAIATGAASKSQQAIGTGVMGGMITAT 1009


>gi|227504985|ref|ZP_03935034.1| preprotein translocase subunit SecF [Corynebacterium striatum ATCC
           6940]
 gi|227198435|gb|EEI78483.1| preprotein translocase subunit SecF [Corynebacterium striatum ATCC
           6940]
          Length = 397

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/319 (20%), Positives = 135/319 (42%), Gaps = 11/319 (3%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                   L  D     F+        I+ +    SI  +   G +  +DF+GG +L + 
Sbjct: 8   HKISKMDRLYEDEGGYDFIGRSKTWYAITAVLVAASILAIAIRGFSLSLDFEGGTKLNMP 67

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY----QPGDSVAQTRVLEMVKK 640
           A   V   V  +  E++ +     Q      +  + +      Q     A+  + E    
Sbjct: 68  AADLVAEQVGDTFEEAIGVEPEMVQIVGAGDSRTLEITSERLSQEQVDTARQAIFEQYHP 127

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K  E         +  V       + ++ ++ + +      +Y+ +R +   A  AI  L
Sbjct: 128 KDAEGKATPDAIGSSTVSESWGSAITQRMLLAMAVFLATATVYVAVRLQRDMAFAAILAL 187

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFR 758
           ILD     G +A+FG+E +   +  +LT++ +S+ D V+V+D++ +N +        ++ 
Sbjct: 188 ILDGVIIAGIYAIFGLEVSPAVIIGLLTVLTFSIYDSVIVFDKVNENTEGFQGQRKKTYG 247

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSI 813
           +L + ++N+T+ RS+ TS+ + + ++ + V      G   +   A+    G++    SS+
Sbjct: 248 ELANLAVNQTVMRSISTSIISVLPIIALFVIAVWLMGIGTLRDLALIQLIGVIEGIFSSL 307

Query: 814 FIAAPILLFIYDWRAKNAR 832
           F+A P+L+ I + R    +
Sbjct: 308 FLATPLLVSIANRRKSVKK 326


>gi|217978607|ref|YP_002362754.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocella silvestris BL2]
 gi|217503983|gb|ACK51392.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocella silvestris BL2]
          Length = 1078

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/550 (11%), Positives = 140/550 (25%), Gaps = 40/550 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G +           +  +P   P               + +    
Sbjct: 10  RPIFAAVLSIILTIAGAIA-----QRSLPVSEYPEIAPPT-------------VNITTTY 51

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +     +   + +   +    I ++F      +     V  
Sbjct: 52  PGASAEVIAATVATPIEQQVNGVDDMLYITSQSTGDGRLSIDVTFKPGTNVDQAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L     +  +         +++               S        D +   
Sbjct: 112 RVAIATPRLPEPVIRQGVTVQKASPDLMMVVHLISPDGSRSQQYISNYATLYLKDSLARV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP+++     T  ++       N            +    
Sbjct: 172 DGVGRVDIFGARDYAMRIWLDPAKVAARSLTVEEVVAALQAANLQVAAGAINQPPVSSPS 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V+    ++                    DI                 +       
Sbjct: 232 AFQLSVQTLGRLT--------------DPAQFEDIVIRSDADGYVRVRDIGRVELGAQDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L   V    +   +   +   T           +    P     V          
Sbjct: 278 TVNAYLDRDVATAMVMFQRPGSNALATAAAVLAAMETAKKDFPPGIDYTVVYNPTEFIQQ 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T     GLV++V+ + +   +  ++   +I +++I     +S +G T    S+
Sbjct: 338 SVDEVVHTLYEAIGLVVLVVIVFLQTWRAAIIPVIAIPVSLIGCFLFMSGVGLTFNTLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E +        +   +          A   I        I T
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERYLEHGAAPKDAAHKTMDEVGGALLAIALVLCAVFIPT 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   + FAIT+  + +IS F ++++  A+   +++ +         L R    
Sbjct: 458 AFITGLQGAFYKQFAITIASATVISAFVSLTLSPALAAILLKQRDQNPKKSGFLYRLATP 517

Query: 535 PDCIAIQFMR 544
                  F  
Sbjct: 518 LRWFFAGFNW 527



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 58/171 (33%), Gaps = 7/171 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               I+   ++ + + + +   ++ W      I  + + I   +        + N+     
Sbjct: 880  NTAILAFGLAVVFVFLLLAALYESWALPFAVILIVPMCILAAMIGVTWRDFDRNILVDIG 939

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G +  + +++ +  +   +      +  +    +    L   + TS A    VLP
Sbjct: 940  LVVLVGLAAKNAILIVEFAK---QAEEEGHTRFEAAVSAARTRLRPILMTSFAFIFGVLP 996

Query: 786  MA---VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +A     G  +  S    +  G++      +       + +     +  R+
Sbjct: 997  LARAEGAGAEMRQSLGTAVFAGMLGVTMFGLLFTPTFYVVVRGISLRLERL 1047



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 56/514 (10%), Positives = 136/514 (26%), Gaps = 33/514 (6%)

Query: 7    LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             + +  +I   GL+    + L ++     P       I+    L  GS L       D  
Sbjct: 545  RISVVVLIVYAGLIYFAFDILNKTPTGLIPQLDRGYLIA-AFQLPPGSSL-------DRT 596

Query: 67   NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
            +  L+  +D +       G+    +    +  T + A +     +       L+    ++
Sbjct: 597  DKVLRQATDIILQR---PGVEHAVVFAGFDGATFTNATNTGVIFV------ALKPFKDRV 647

Query: 127  NVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                    ++    + I+++       ++      I     +     D+ G     ++  
Sbjct: 648  PAGLTAPKILADVRQHIAVLTDAFAFVLEPPSVPGIGTGGGLKGYVQDRSGRGLPALEGA 707

Query: 185  GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD--GNQYL 242
                +                   T ++            G      F   S   G+ Y+
Sbjct: 708  TWGLVGAIHQNPGFVQAFTLFNTKTPQIYADIDRTKAELLGVPISRVFDTLSVYMGSAYI 767

Query: 243  VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  +      +     N    T + V ++             +  ++          R 
Sbjct: 768  NDFNILGRTYQVTAQADNPYRLTTRDVANLKTRNANGDMVPIGSVASLNDTTGPFRVTRY 827

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
               P     +   +   SG        +    L  G          E    A     +  
Sbjct: 828  NLYPAAEVQVALARGFSSGQGIAAIEALAKQTLPQGFGF-------EWTEIALQEKLAGN 880

Query: 363  KGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                A    +V + L +  LY            + + ++  +  ++       +    G+
Sbjct: 881  TAILAFGLAVVFVFLLLAALYESWALPFAVILIVPMCILAAMIGVTWRDFDRNILVDIGL 940

Query: 421  VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF-- 478
            V+ +GLA  + IL+ E  ++   +  + F +           I  ++   +   + L   
Sbjct: 941  VVLVGLAAKNAILIVEFAKQAEEEGHTRFEAAVSAARTRLRPILMTSFAFIFGVLPLARA 1000

Query: 479  -FFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               G    +     +   +L      +       
Sbjct: 1001 EGAGAEMRQSLGTAVFAGMLGVTMFGLLFTPTFY 1034



 Score = 42.0 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 61/148 (41%), Gaps = 9/148 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  A+  +  + + +     F +  G+ FN  ++  ++  IG  V+D +VV + +    +
Sbjct: 364 WRAAIIPVIAIPVSLIGCFLFMSGVGLTFNTLSLFGLVLAIGIVVDDAIVVVENV---ER 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 + +D   K+++E  G  +  ++      +P A      G+    FAI +A   V
Sbjct: 421 YLEHGAAPKDAAHKTMDEVGGALLAIALVLCAVFIPTAFITGLQGAFYKQFAITIASATV 480

Query: 807 VAASSSIFIAAPILLF--IYDWRAKNAR 832
           ++A  S+   +P L    +        +
Sbjct: 481 ISAFVSL-TLSPALAAILLKQRDQNPKK 507


>gi|758288|emb|CAA59954.1| secD [Streptomyces coelicolor A3(2)]
          Length = 570

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 102/547 (18%), Positives = 195/547 (35%), Gaps = 46/547 (8%)

Query: 45  SLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-I 98
            LG+DL GG+ + L    +           +    + +   +   G+    ++   ++ I
Sbjct: 10  RLGIDLAGGTSITLRAVPEAGQESAINKTNMDTAVEIMNRRVNGLGVSEAEVQTQGDRNI 69

Query: 99  TLSFADSRFKENIADKVTLFLQG-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
            ++       +    +V    +      L  +        T     +   S    D+   
Sbjct: 70  IVNIPKGTNSKEARQQVGTTAKLYFRPVLATELSGANATGTPSASETGGASDKATDKATD 129

Query: 158 HAIEQSMEII------------------------RQRIDQIGISESTIQRLGSHRILIQL 193
            A +++ +                          R   D +    S              
Sbjct: 130 KATDKATDGDKATDGDKASGTPSDSASASATSQGRAASDALKADPSPSATSSDGASPSPS 189

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVE 248
                     +L    A +                                Q  +     
Sbjct: 190 AKASGDDATAKLQQQYAALDCTDKNARAKAGDGAKPDEQTVACGQNSQGQWQKYILGAAA 249

Query: 249 ISGIHL-NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL-----DGRV 302
           + G  +                V + F + G+++F ++T                 D  V
Sbjct: 250 VDGTEVDEAEAVYNTQTAAGWTVTMKFTDKGSKKFADITGKLAQNQSPQNQFAIVLDNEV 309

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           ++ P ++QA+  G A+ISG+F  E A  LA ML  G+LP+         V A LG + + 
Sbjct: 310 VSDPYVSQALTGGNAEISGSFDQEEAQSLANMLSYGALPLTFKEDSVTTVTAALGGEQLK 369

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIA 418
            G  A   GL L+VL+++  Y     +A  S+ ++  LT  +++LLG T+     LP++ 
Sbjct: 370 AGLIAGAIGLALVVLYLLFYYRGLSFIAVCSLLVSAGLTYVIMALLGPTIGFALNLPAVC 429

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G ++ IG+  DS I+  ER+R+E R+ +++  +++  + RA  TI  S+  + +A  VLF
Sbjct: 430 GAIVAIGITADSFIVYFERVRDEIREGRTLRPAVERAWPRARRTILVSDFVSFLAAAVLF 489

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
               G V+GFA T+GL+ L+ +       + ++  + R K   S           +    
Sbjct: 490 IVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPLLTLMARRKFFASGHKWSGLDPKALGAKP 549

Query: 539 AIQFMRA 545
           +++  R 
Sbjct: 550 SVRRTRR 556



 Score =  111 bits (277), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                +  +    N  ++ + +    +    +          G    +            
Sbjct: 286 DITGKLAQNQSPQNQFAIVLDNEVVSDPYVSQALTGGNAEISGSFDQEEAQSLANMLSYG 345

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +       +   V   +  E ++ G++   I    +++Y+   ++   +  A+ +L++ 
Sbjct: 346 ALPLTFKEDSVTTVTAALGGEQLKAGLIAGAIGLALVVLYLLFYYR-GLSFIAVCSLLVS 404

Query: 704 ITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
              T    AL G       NL AV   +  IG + +  +V ++R+R  ++      + R 
Sbjct: 405 AGLTYVIMALLGPTIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIRE---GRTLRP 461

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++++        + +   +F++   + +     +  FA  +    ++          P+
Sbjct: 462 AVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPL 521

Query: 820 LLFIYDWR 827
           L  +   +
Sbjct: 522 LTLMARRK 529


>gi|254285586|ref|ZP_04960550.1| multidrug resistance protein, putative [Vibrio cholerae AM-19226]
 gi|150424448|gb|EDN16385.1| multidrug resistance protein, putative [Vibrio cholerae AM-19226]
          Length = 1036

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 171/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALFGIE--FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF +E   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMEQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|323142206|ref|ZP_08077040.1| heavy metal efflux pump, CzcA family [Phascolarctobacterium sp. YIT
           12067]
 gi|322413269|gb|EFY04154.1| heavy metal efflux pump, CzcA family [Phascolarctobacterium sp. YIT
           12067]
          Length = 1027

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/603 (10%), Positives = 164/603 (27%), Gaps = 40/603 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +   ++   G+        P+  +D  P                   +     
Sbjct: 7   KRPVFTTMFILLLVVFGI-----RCYPEIGVDLNPDVDLPIV---------SVRVTYSGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S +        ++ +  ++  L F      +  A +V   +  
Sbjct: 53  SPQEMETLVTKPIENRVSQVSGIKTLSSTVLEGYSETVLEFNIGVDPQVKASEVREKVAS 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D  + +  T      +IV              E    +     D++ + E   
Sbjct: 113 VRKALPDDIDEPVTQTVDINSRAIVAYTFASPSRSRG--EIRRIVEDNIKDELQMVEGVS 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P +L +       +       N +  G       +  +     
Sbjct: 171 EVTVVGASQRAIRIVLKPEKLAEYGIAYQTVRSKLNANNYNTPGGKAKNDAMEITVRTLG 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  +I  + +   T                     R  +     ++           
Sbjct: 231 KYNNINDIKQVVVANHT--------------------GRPVYISEIADVLDSWEDEDTFA 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSDS 360
                         +++ +     +        L+ +   P  +             + +
Sbjct: 271 SANGVPCVMTFVRKQSKTNTVDVTDNVNAKMEELKHSNLPPDIIVDKVRDQSNYIRDNIA 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      L L++ ++ +   +  ++    I  ++I T  ++ ++G TL   S+  +
Sbjct: 331 DVWNAILFGGFLALLITYLFLRNFRATIIGGLCIPTSIIATFFMMKVMGFTLNNMSLMAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ +D  I+V E I       Q+ F +           I  ++++ +   V +   
Sbjct: 391 SLAVGILIDDAIVVIENIFRHIEMGQTPFVAAKEATEELTLAILATSLSLMAVFVPIGNM 450

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   + F +T+  ++  S   A S+   +  + I+ +  +              D 
Sbjct: 451 GETIGQFFKQFGLTVAFAVAFSTIVAFSLTPMVSAYWIKAETEEQSSKERTHFVQRALDK 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F   R     +          ++    ++  ++      +G       D      N
Sbjct: 511 FEAGFQSVREMYDSLMAWALERPKKVVAVGIISLLLNLLLLPFVGTEFQPTYDSGEFSVN 570

Query: 598 LES 600
           +++
Sbjct: 571 VKA 573



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/254 (10%), Positives = 73/254 (28%), Gaps = 13/254 (5%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  G           +D         S             +            ++  + 
Sbjct: 244 ANHTGRPVYISEIADVLDSWEDEDTFASANGVPCVMTFVRKQSKTNTVDVTDNVNAKMEE 303

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                +   I                  +   ++  G + ++I+      Y+++R  +  
Sbjct: 304 LKHSNLPPDIIVDKVRDQSNYIRDNIADVWNAILFGGFLALLIT------YLFLR-NFRA 356

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +     +   I  T     + G   N  ++ A+   +G  ++D +VV + +    +   
Sbjct: 357 TIIGGLCIPTSIIATFFMMKVMGFTLNNMSLMALSLAVGILIDDAIVVIENI---FRHIE 413

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              +      ++  E     + TS++     +P+   G   G     F + +AF +  + 
Sbjct: 414 MGQTPFVAAKEATEELTLAILATSLSLMAVFVPIGNMGETIGQFFKQFGLTVAFAVAFST 473

Query: 810 SSSIFIAAPILLFI 823
             +  +   +  + 
Sbjct: 474 IVAFSLTPMVSAYW 487



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 94/258 (36%), Gaps = 9/258 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
               + +  +      +   ++  ++ G    +    +K   + +            + ++
Sbjct: 768  NDVMNLRISSSAGQFIRLGDIADVRYGSGPTRIEREDKQRQIVVYANTVGISPGDLIGKV 827

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              + I E+          I          ++    VI++ + + + +  +F+  F+   I
Sbjct: 828  RDEYIPELNLPPGYNYKMIGQADNMARSFKEVYKAVILAIVVVYMVLAAQFE-SFSQPLI 886

Query: 698  TTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              + L          L   G   N+ ++     L+G    + +++ D   +        +
Sbjct: 887  IMVSLPFAIIGAILGLLVAGQTANMMSMIGFTMLLGLVTKNAILLIDYANQER---EKGM 943

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
            S R+ +  + +  L   + T+++  + +LP+A+    G  +  S  + +  G+  +   +
Sbjct: 944  SIREAVLLACSLRLRPILMTTLSTILGMLPIALGIGEGAELRQSMGVVLIGGLTTSTLLT 1003

Query: 813  IFIAAPILLFIYDWRAKN 830
            + +   I L   +W+AKN
Sbjct: 1004 LVVVPLIYLLFEEWKAKN 1021


>gi|157375421|ref|YP_001474021.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
 gi|157317795|gb|ABV36893.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
          Length = 1055

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/678 (10%), Positives = 187/678 (27%), Gaps = 46/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++        Q  +D++P   P               + +    
Sbjct: 8   RPVFASVISIVIVLLGVIAMF-----QLPIDQYPYITPP-------------QVKVSASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
               +    +  +  L   L     +   S +        +T++F      +  A  V  
Sbjct: 50  PGATSTTAAESVATPLEQELNGVPNMIYMSSKSTNSGSANVTITFDVGTNPDLAAVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q     L +D +   +  + E  + ++             I  S          +   
Sbjct: 110 STQQATGSLPIDVQTEGVSVSKEASVELLKLALTSSDERYDEIYLSNYATINIQSALKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +   +      +     P  +     TT+ +       N        G +   DS 
Sbjct: 170 PGVGRVRNTGSRSYSMRVWLKPDMMAGYGLTTSDVIGAIKAQNRESPAGSIGSQPNTDSL 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S                +    I                +I    +  
Sbjct: 230 SMTLPITAAGRMS-------------SVPQFNEIIVRANTDGSLIRLRDIASIELGSSAY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L           V          
Sbjct: 277 TLQSQLNGANATILQVYLLPGANALEVTKRVKQEMAALGEKFPQGMEWQVFFDASIFIQN 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +  L+   ++ +++I TLA +   G T+   S+
Sbjct: 337 SIDEVVKTLIEALVLVILVVYLFLQNWRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +    +    S   +  +        +  +++      V 
Sbjct: 397 LALVLAIGIVVDDAIVVVENVERLMHENGLSPTEATKVAMKELSGALVATSLVLAAVFVP 456

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINP 527
           + F     G   R FA+ + +++LIS   A+++  A+   ++R          K ++   
Sbjct: 457 VSFLSGITGIMYREFAVAITVAVLISTVVALTLSPALCALLLRPGDQATSGFFKWLNDKL 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     + +    A+   +  +++     + +          + +G   + +    
Sbjct: 517 DMSTSKYVALVTLTNKHAKRSYLAFAVMVGGVYVIMSGLPSSFMPDEDQGRFFIDMSLPN 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++  ++ L+  +   ++              +    +       + +          
Sbjct: 577 GATVNRSQAVLKKAEAKVLNHPAVAYSFTLAGENRRSGSNQANGMFEIILKPWSQRADDN 636

Query: 648 LSTIQNTEIVGPKISREL 665
            +  Q  + +   +   L
Sbjct: 637 ATVQQVMKDIKVSLQDIL 654



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 86/215 (40%), Gaps = 10/215 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    A   V+  + +  T ++P         +  +  +   + GI  V ++ + +
Sbjct: 821  INASPAQGYASGDVIRAINRVATPMLPNEFRYEWTGITYQEVQSANQTGI-AVTLAMVFV 879

Query: 681  LIYI-WIRFKWYFALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
             +++  +   W   +   +   I  +   LG F + G+E NL    A ++LIG +  + +
Sbjct: 880  FLFLCALYESWTIPIAVLLIAPIAMLGAALGTF-VSGMESNLFFQVAFISLIGMAAKNSI 938

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ +      +L+    S  +   ++ N      + TSMA  + VLP+ +    G     
Sbjct: 939  LIVEFAN---QLHKQGKSRLEAALEAANMRFRPILMTSMAFILGVLPLVLSVGPGAVSRQ 995

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            S +IP+  G++ A +  I +     +    W    
Sbjct: 996  SISIPILCGMIFATTIGIVLVPLFFVTTAGWFKSK 1030



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  TL     FG   N  ++ A++  IG  V+D +VV + +     
Sbjct: 363 WRATLIPAIAVPVSLIGTLAAMLAFGFTINTVSLLALVLAIGIVVDDAIVVVENV--ERL 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAFG--IV 806
           ++   +S  +    ++ E  G  V TS+      +P+  + G + I      +A    ++
Sbjct: 421 MHENGLSPTEATKVAMKELSGALVATSLVLAAVFVPVSFLSGITGIMYREFAVAITVAVL 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++ ++  +   +  
Sbjct: 481 ISTVVALTLSPALCALLLR 499


>gi|15836831|ref|NP_297519.1| preprotein translocase subunit SecF [Xylella fastidiosa 9a5c]
 gi|9105035|gb|AAF83039.1|AE003876_4 protein-export membrane protein [Xylella fastidiosa 9a5c]
          Length = 321

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 87/275 (31%), Positives = 148/275 (53%), Gaps = 4/275 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIP+   I FMR R   + +  +    S+ ++   G NY ++F GG  +     +PVD 
Sbjct: 7   HLIPNDTKIDFMRWRQLTLMLMSILFAISVLVVVFKGFNYALEFTGGTLVRTQFAKPVDA 66

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQY--QPGDSVAQTRVLEMVKKKITEIVPLS 649
             VR  LE   +G+   Q+  G    L+RLQ   +  +        E V+K IT     +
Sbjct: 67  DQVRQRLEVGGLGNAQVQSVGGGNELLIRLQPYAEHNNDDVAKNAAEAVRKVITLPGNPA 126

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           T+Q  E VGP++ ++L   G+   I   +  LIYI  RF+W FA+ A  T   D+  T+ 
Sbjct: 127 TVQPGEFVGPQVGKDLAMNGVYATIFMLLGFLIYIGFRFEWKFAVAASLTAFFDLILTIA 186

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           + +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   +++++SIN+TL
Sbjct: 187 YMSLLGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRSL--RVEPLEVLNRSINQTL 244

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            R+V T++  F+S   + ++GG  +   A     G
Sbjct: 245 SRTVITAVMFFLSAFALYLYGGRSMEGLAETHMAG 279


>gi|15640930|ref|NP_230561.1| multidrug resistance protein, putative [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587687|ref|ZP_01677449.1| multidrug resistance protein, putative [Vibrio cholerae 2740-80]
 gi|121728046|ref|ZP_01681084.1| multidrug resistance protein, putative [Vibrio cholerae V52]
 gi|153817203|ref|ZP_01969870.1| multidrug resistance protein, putative [Vibrio cholerae NCTC 8457]
 gi|153822098|ref|ZP_01974765.1| multidrug resistance protein, putative [Vibrio cholerae B33]
 gi|227081089|ref|YP_002809640.1| putative multidrug resistance protein [Vibrio cholerae M66-2]
 gi|229505482|ref|ZP_04394992.1| RND multidrug efflux transporter [Vibrio cholerae BX 330286]
 gi|229510848|ref|ZP_04400327.1| RND multidrug efflux transporter [Vibrio cholerae B33]
 gi|229517969|ref|ZP_04407413.1| RND multidrug efflux transporter [Vibrio cholerae RC9]
 gi|229608501|ref|YP_002879149.1| RND multidrug efflux transporter [Vibrio cholerae MJ-1236]
 gi|254848048|ref|ZP_05237398.1| multidrug resistance protein [Vibrio cholerae MO10]
 gi|255744702|ref|ZP_05418653.1| RND multidrug efflux transporter [Vibrio cholera CIRS 101]
 gi|262161164|ref|ZP_06030275.1| RND multidrug efflux transporter [Vibrio cholerae INDRE 91/1]
 gi|298498966|ref|ZP_07008773.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|9655371|gb|AAF94076.1| multidrug resistance protein, putative [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121548059|gb|EAX58135.1| multidrug resistance protein, putative [Vibrio cholerae 2740-80]
 gi|121629675|gb|EAX62095.1| multidrug resistance protein, putative [Vibrio cholerae V52]
 gi|126512237|gb|EAZ74831.1| multidrug resistance protein, putative [Vibrio cholerae NCTC 8457]
 gi|126520370|gb|EAZ77593.1| multidrug resistance protein, putative [Vibrio cholerae B33]
 gi|227008977|gb|ACP05189.1| putative multidrug resistance protein [Vibrio cholerae M66-2]
 gi|229344684|gb|EEO09658.1| RND multidrug efflux transporter [Vibrio cholerae RC9]
 gi|229350813|gb|EEO15754.1| RND multidrug efflux transporter [Vibrio cholerae B33]
 gi|229357705|gb|EEO22622.1| RND multidrug efflux transporter [Vibrio cholerae BX 330286]
 gi|229371156|gb|ACQ61579.1| RND multidrug efflux transporter [Vibrio cholerae MJ-1236]
 gi|254843753|gb|EET22167.1| multidrug resistance protein [Vibrio cholerae MO10]
 gi|255737733|gb|EET93127.1| RND multidrug efflux transporter [Vibrio cholera CIRS 101]
 gi|262028914|gb|EEY47567.1| RND multidrug efflux transporter [Vibrio cholerae INDRE 91/1]
 gi|297543299|gb|EFH79349.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 1036

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 171/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|317154947|ref|YP_004122995.1| acriflavin resistance protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316945198|gb|ADU64249.1| acriflavin resistance protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1028

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 74/622 (11%), Positives = 169/622 (27%), Gaps = 45/622 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ + I   G++        +  +   PS                    L   
Sbjct: 9   RRPVMTTLVMASILIFGVMA-----YFRLPVSDLPSVDFPTIQ---------VQAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +                ITL F   R  ++ A  V   +  
Sbjct: 55  NPETMASSVATPLEKQFSTIAGLDSMTSVSNLGSTNITLQFDLERNIDDAALDVQSAITT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  D  ++          S +L    +        + +         +I +     
Sbjct: 115 ALRKLPNDMTQSPSFRKVNPADSPILY-LALSSPTMRLSDVNEYAENVMAQRISMVSGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q +        +  + DP  L        +++      N +                +  
Sbjct: 174 QVMVYGSKKFAVRIQLDPETLASKELGVDEVAEAVRQGNVNLPVGTVAGPAREYVVRSSG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +                 +   +       
Sbjct: 234 KLMSA--------------------DDYRPLVVAWRNGSPVRLGEVAQVLDSVEETRRLN 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    +E    L    +A         V      +   S   
Sbjct: 274 WYNGTPGMVLAVQRQPGTNTVEVVEAVRALLPAFQAQLPAAITLDVLYDRSQSIRESVHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T A+   LV++V+F+ +      ++   ++ +++I T A++ L G +L   S+  + 
Sbjct: 334 VKFTLALTVILVILVIFLFLRRVSATVIPSLALPMSIIGTFAVMYLAGFSLNNISLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E I       ++   ++  G      TI    I+     + + F G
Sbjct: 394 LSVGFVVDDAIVMLENIVRHTEMGKTPMEAVLDGSREITFTIVSMTISLAAVFLPVLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRF 531
              G     FA+T+  +ILIS F ++++   +   I          +   + +    +  
Sbjct: 454 GIVGRLFHEFAVTICAAILISGFVSLTLTPMLCNLILRPNRVERHGRLYNAFERGFDAMR 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +       R   +   ++ +                +  G +Q+   + + V  
Sbjct: 514 DTYRVTLDWTIRHHRLTMLFSFVVLAATVYLFQVIPKGFLPSEDIGQLQVTTESEQGVPF 573

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
             + +  + L       +  DG
Sbjct: 574 ETMVARQKQLMEIVSKDEAVDG 595



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 92/256 (35%), Gaps = 9/256 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               PV L  V   L+S++               L   +    ++V     +  +     
Sbjct: 249 RNGSPVRLGEVAQVLDSVEETRRLNWYNGTPGMVLAVQRQPGTNTVEVVEAVRALLPAFQ 308

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLIL 702
             +P +   +      +  RE + +    + ++ I +++ I     +    +     L +
Sbjct: 309 AQLPAAITLDVLYDRSQSIRESVHEVKFTLALTVILVILVIFLFLRRVSATVIPSLALPM 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T     L G   N  ++ A+   +G+ V+D +V+ + +   ++      +  + + 
Sbjct: 369 SIIGTFAVMYLAGFSLNNISLMALTLSVGFVVDDAIVMLENI---VRHTEMGKTPMEAVL 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
               E     V  +++     LP+   GG V      FA+ +   I+++   S+ +   +
Sbjct: 426 DGSREITFTIVSMTISLAAVFLPVLFMGGIVGRLFHEFAVTICAAILISGFVSLTLTPML 485

Query: 820 --LLFIYDWRAKNARI 833
             L+   +   ++ R+
Sbjct: 486 CNLILRPNRVERHGRL 501



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 70/178 (39%), Gaps = 9/178 (5%)

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLG 709
            +T   G   + +    G+  ++ +   ++IY+ +      +   L  ++ L       L 
Sbjct: 839  STSFQGEAQAFQSSMTGLWALM-ALAVLVIYLVLGVLYESFLHPLTILSGLPSAGVGALA 897

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               +FG++ N+     ++ LIG    + +++ D   +  +        R  I +      
Sbjct: 898  TLMVFGVDLNIYGFVGIIMLIGIVKKNAIMMIDFAVEAQRKA--GTDARTAIREGALIRF 955

Query: 770  GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               + T+MAA +  LP+A+    G        + +  G+VV+   +++      +++ 
Sbjct: 956  RPIMMTTMAALMGTLPIALGMGAGAEARRPLGLAVVGGLVVSQLLTLYFTPVYYMYLD 1013


>gi|317048816|ref|YP_004116464.1| acriflavin resistance protein [Pantoea sp. At-9b]
 gi|316950433|gb|ADU69908.1| acriflavin resistance protein [Pantoea sp. At-9b]
          Length = 1025

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATTLLTLAIALAGIL-----GFRLLPVAPLPQVDFPVIV---------ISASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSTSSLGSTRIILVFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +   I +  +       Q   ++   E    
Sbjct: 116 QSLLPTGMPSRPTYRKANPSDAPIMI-LTLTSDIYNPGQLYDYASTQLAQKLSQIEGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P  L     +   +       N  +       +  R        
Sbjct: 175 VTVGGSSLPAVRVELNPQALFNQGVSLDAVRTAIANANQRRPQGAIDDQQQRWQLRTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                       +                N+   +  V +  +
Sbjct: 235 LQTASD--------------------YQPLVVHYNNGAAVRLRDVANVQDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +     + +   T++        L           V +        S    
Sbjct: 275 TNGKPAVLLVIRKSPEANVIDTVDRIRAELPELHDVIPASIDLQVAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +  I   LV++V+F  +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQSLIIAVALVILVVFFFLRDGRATLIPAAAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHVEAGMKPLQAALQGVREVGFTVLSMSLSLIAVFLPLLMLGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G     FAIT+ ++ILIS+F +I++   M  ++++    ++      +   L+     
Sbjct: 455 IIGRFFSEFAITLSVAILISLFISITLTPMMCAYLLKPHVPRAQTRLRGAGRVLMAVQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +      AR+  + +     +     +            G +   + A++ +    
Sbjct: 515 YGRSLGWVLDHARWVLLVLLATVGLTIWLFISIPKTFMPEQDTGRLTGFISADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 83/260 (31%), Gaps = 10/260 (3%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +    N  +      Q  V+         +R                       V L  +
Sbjct: 227 WQLRTNDELQTASDYQPLVVHYNNGAAVRLRDVANVQDSVQDVRNAGMTNGKPAVLLVIR 286

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI---VGVIISAIAML 681
                     ++ ++ ++ E+  +        V    S  +          +II+   ++
Sbjct: 287 KSPEANVIDTVDRIRAELPELHDVIPASIDLQVAQDRSPTIRASLQEVEQSLIIAVALVI 346

Query: 682 IYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           + ++   +     L     + + +  T     L G   N  ++ A+    G+ V+D +VV
Sbjct: 347 LVVFFFLRDGRATLIPAAAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVV 406

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SF 797
            + +    +     +       + + E     +  S++     LP+ + GG +      F
Sbjct: 407 LENI---ARHVEAGMKPLQAALQGVREVGFTVLSMSLSLIAVFLPLLMLGGIIGRFFSEF 463

Query: 798 AIPMAFGIVVAASSSIFIAA 817
           AI ++  I+++   SI +  
Sbjct: 464 AITLSVAILISLFISITLTP 483



 Score = 45.5 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 94/219 (42%), Gaps = 7/219 (3%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   + V+ ++  + + + +T +    +++ +     ++ ++     +  ++ +  A
Sbjct: 803  TISFNLPEGVSLSQASDAIDRTMTALGVPGSVRGSFAGTAQVFQQSQSSQLYLILAAIAA 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  +L LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNTPFSLIALIGILLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     ++ RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALEAERNGN--LTARDAIFQACQLRFRPILMTTLAALFGALPLVLTTGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYD-WRAKNARI 833
               I +A G+V++   +++    + L +    R K   +
Sbjct: 981  PLGITIAGGLVMSQLLTLYTTPVVYLMMDKLRRRKRPAL 1019


>gi|87124275|ref|ZP_01080124.1| preprotein translocase subunit [Synechococcus sp. RS9917]
 gi|86167847|gb|EAQ69105.1| preprotein translocase subunit [Synechococcus sp. RS9917]
          Length = 499

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 123/492 (25%), Positives = 212/492 (43%), Gaps = 45/492 (9%)

Query: 43  RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNK 97
            + LGLDLRGGS L LEV             L+     L   +   G+   +++    ++
Sbjct: 26  PLQLGLDLRGGSQLTLEVQPGGSIQTVKPEQLEAVKAVLDRRVNGLGVAESTLQTVGDDQ 85

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           + L           A  +                                          
Sbjct: 86  LVLQLPGETDPSRAAKVLGSTALLEFR--------------------------AQKPGTE 119

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
             +   + +  Q    + + E+  +   +           D  +L +             
Sbjct: 120 EEMRGLLRLRNQVRQILALREARSRDGSAESSAGDAETALDQEQLAKA-------QQALG 172

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
           L  ++        +     +       +   ++G  L  A     P      V ++F+  
Sbjct: 173 LSGSAGSEQEQLEQLQAKVNEEIVARFEPAALTGKDLVTAGRQQQPNATGWEVTLTFNRE 232

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN-------QAIPSGKAQISGNFTIETAGI 330
           G   F  +TR   G    + +          +         I  G A I+GNF+ E A  
Sbjct: 233 GGEAFANLTRSIAGSGRLLGIVLDGQPISEASVGEQFKAAGITGGAASITGNFSAEEARD 292

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           L   LR GSLP+ + I+E R +G  LG++++ +   A ++GL L+ LFM+++Y   GLVA
Sbjct: 293 LEVQLRGGSLPLPVTILEVRTIGPTLGAENVQRSLIAALSGLALVALFMLLVYRLAGLVA 352

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ L  +  LA+ +L+  TLTLP IAG +L IG+AVD+N+L+ ERI++E R+  ++  
Sbjct: 353 VLALSLYALFNLAVYALIPVTLTLPGIAGFILSIGMAVDANVLIFERIKDELRRGTTLIR 412

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           S++ GFS A S+I D ++T LI+   LFF G G V+GFA T+G+ +L+S+FTA++  R +
Sbjct: 413 SIETGFSEALSSIVDGHLTTLISCAALFFLGTGLVKGFAATLGIGVLLSLFTALTCTRTL 472

Query: 511 MIFIIRYKKMKS 522
           + F++ Y+ ++ 
Sbjct: 473 LRFLMGYQALRR 484



 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E +++ ++  +     + +++ + ++    L A+  L L     L  +AL  
Sbjct: 313 TIGPTLGAENVQRSLIAALSGLALVALFMLLVYRL-AGLVAVLALSLYALFNLAVYALIP 371

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++      +    I+   +E L   V  
Sbjct: 372 VTLTLPGIAGFILSIGMAVDANVLIFERIKDELR---RGTTLIRSIETGFSEALSSIVDG 428

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS   +   G  ++  FA  +  G++++  +++     +L F+  ++A   
Sbjct: 429 HLTTLISCAALFFLGTGLVKGFAATLGIGVLLSLFTALTCTRTLLRFLMGYQALRR 484


>gi|332708025|ref|ZP_08428021.1| protein translocase subunit secF [Lyngbya majuscula 3L]
 gi|332353207|gb|EGJ32751.1| protein translocase subunit secF [Lyngbya majuscula 3L]
          Length = 333

 Score =  168 bits (424), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/250 (27%), Positives = 138/250 (55%), Gaps = 8/250 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             ++P+DL++VR  + +  +G+ S Q    EK   + ++ +  D   +T++   + +++ 
Sbjct: 61  NCDQPIDLALVRDVMTAQGLGNSSIQILGEEKQ-ALTIRTKTLDVEQRTQLQTALTERLG 119

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
              P       + VGP + R+L   G++ + ++ + + +Y+  RF++ + L A   L  D
Sbjct: 120 VFDPK--STQIDTVGPTLGRQLFISGLIALFMAFVGIFVYLTFRFEFDYGLFAFVALFHD 177

Query: 704 ITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +   +G F++ G+    E +   V A+LT+IG+SVND VV+YDR+R+ +KL         
Sbjct: 178 VLIAIGLFSILGLVLGVEVDTLFVVALLTIIGFSVNDTVVIYDRVREVIKLKP-GQHINQ 236

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++ ++N+TL RS+ T++   + +L + ++GG  +  FA+ +  G    + SSIFIA+ +
Sbjct: 237 IVEDAVNQTLTRSINTTLTTLLPLLAILLFGGETLKFFALALIIGFTAGSYSSIFIASTL 296

Query: 820 LLFIYDWRAK 829
           L +  +   K
Sbjct: 297 LAWWRERTGK 306


>gi|229529985|ref|ZP_04419375.1| RND multidrug efflux transporter [Vibrio cholerae 12129(1)]
 gi|229333759|gb|EEN99245.1| RND multidrug efflux transporter [Vibrio cholerae 12129(1)]
          Length = 1036

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 171/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|147674044|ref|YP_001216390.1| putative multidrug resistance protein [Vibrio cholerae O395]
 gi|262168667|ref|ZP_06036362.1| RND multidrug efflux transporter [Vibrio cholerae RC27]
 gi|146315927|gb|ABQ20466.1| putative multidrug resistance protein [Vibrio cholerae O395]
 gi|227012733|gb|ACP08943.1| putative multidrug resistance protein [Vibrio cholerae O395]
 gi|262022785|gb|EEY41491.1| RND multidrug efflux transporter [Vibrio cholerae RC27]
          Length = 1036

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 171/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 49/134 (36%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +  +++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQISMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|153826141|ref|ZP_01978808.1| multidrug resistance protein, putative [Vibrio cholerae MZO-2]
 gi|297581297|ref|ZP_06943221.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|149740164|gb|EDM54323.1| multidrug resistance protein, putative [Vibrio cholerae MZO-2]
 gi|297534613|gb|EFH73450.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 1036

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 171/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|325925601|ref|ZP_08186986.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
 gi|325544001|gb|EGD15399.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
          Length = 1041

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/684 (10%), Positives = 177/684 (25%), Gaps = 49/684 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P               +      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  SR  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDALAGIEGISTIEARSRNGSSDISIEFVQSRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARPPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARELTVADVEAALQNENVELPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLNKGEGGYVVRLGDVARVELTSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +       A   A  ++          V          +    
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVAREARAQAEEVQKSLPKGTNIFVAFDTTTFIDAAVERV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LVL+V+++ +   +  L+   ++ + +I     L     ++ L ++  +VL
Sbjct: 335 YHTLVEAVVLVLVVIWVFLGSARAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IGL VD  I+V E +     + Q S   +      +    +    +      V + FF 
Sbjct: 395 CIGLVVDDAIVVVENVERVMSEEQLSPKDATRKSMDQISGALIGVALVLAAVFVPMAFFS 454

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------IDINPL 528
           G      R F+IT+  ++ +S+  A+ +  A+   +++                 +    
Sbjct: 455 GSTGVIYRQFSITIVSAMTLSVLVAMILTPALCATLLKPVHKGHGLATTGFFGWFNRLFD 514

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +     +   + +  + L ++     +         + +G + + V     
Sbjct: 515 RGNTGYQGVVRHMLGKGWRYMLAYAALLALVVFGFMKLPVGFLPDEDQGTLFVLVQLPPG 574

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
              +     L+ ++   +  Q       F V      G           ++         
Sbjct: 575 ATNARTSEVLKQVEHHFLVDQKDSVAGVFAVTGFSFAGSGQNVGFAFVKLRPWDERTGKG 634

Query: 649 STIQNTEIVGPKISRELIRKGIVG 672
            ++ +           +    +  
Sbjct: 635 QSVTDVAARAGAFFAGIRDAKVFA 658



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 78/266 (29%), Gaps = 10/266 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                         +   A   V  +   +         +   N       L         
Sbjct: 770  PYRMNPQDIDHWFVRNSAGTMVPFNAFATASWQSGSPRLERYNSVPSMEILGMALPGAAS 829

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            S    +++E    K+   +          +  +      + G++  +   I  L    + 
Sbjct: 830  SGEAMQIVEAAAAKLPPGIGF----EWTGLSRQEKASSGQTGLLYSVSILIVFLCLAALY 885

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              W      I  + L +  TL    L     ++     +LT IG +  + +++ +  R+ 
Sbjct: 886  ESWAIPFSVILVVPLGVFGTLLAAMLTWKMNDVYFQVGLLTTIGLASKNAILIVEFARE- 944

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
              L+    S      ++    L   + TS+A  + V+P+ +    G     +    +  G
Sbjct: 945  --LHEGGKSLVAAALEAARMRLRPILMTSLAFILGVVPLVLTSGAGAGAQHALGTAVIGG 1002

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++     +IF      + +     + 
Sbjct: 1003 MLSGTVLAIFFVPLFFVLVCGLFQRR 1028



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 56/138 (40%), Gaps = 5/138 (3%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL    T+ + +         F    NL  + A++  IG  V+D +VV + +     +
Sbjct: 357 RAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENV--ERVM 414

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               +S +D   KS+++  G  +  ++      +PMA + GS       F+I +   + +
Sbjct: 415 SEEQLSPKDATRKSMDQISGALIGVALVLAAVFVPMAFFSGSTGVIYRQFSITIVSAMTL 474

Query: 808 AASSSIFIAAPILLFIYD 825
           +   ++ +   +   +  
Sbjct: 475 SVLVAMILTPALCATLLK 492


>gi|296120828|ref|YP_003628606.1| acriflavin resistance protein [Planctomyces limnophilus DSM 3776]
 gi|296013168|gb|ADG66407.1| acriflavin resistance protein [Planctomyces limnophilus DSM 3776]
          Length = 1062

 Score =  168 bits (424), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/663 (12%), Positives = 203/663 (30%), Gaps = 30/663 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L S    +GL        P+  ++ FP+                    L   
Sbjct: 9   RRPIFTTMLVSAPVILGLAA-----YPRLGVELFPNVDVPMVT---------ITTTLRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E+ + +        + ++  +++ + F   +  +  A +V   ++ 
Sbjct: 55  SVEEMETGVTKPIEEIVNTVAGIDELKSTTKEGSSQVVIGFDLDKNGDIAAQEVDAKVRT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L       ++         ++    +  +      E +    RQ  + +       
Sbjct: 115 ILSQLPEGTDAPIIDKFAVDATPVLTVAISGKRDEREITEIAR---RQVKEILETVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQL-LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      +    DP RL++    T   +    +  N  + G               
Sbjct: 172 SVAMVGSRQRAINIWIDPDRLQKFPNLTIEDVRLALLRENQEQPGGRVDRGTSEVVLRTM 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    E   + +          +    V+ S +E            +           
Sbjct: 232 ARMATPQEFESLIIANRGGQPVRISDVGRVEDSIEEPRGLSRLWTRAADGKNVSQA---- 287

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      I   ++  +    +       A L+A         V          S  
Sbjct: 288 ----GDAAVSLIIQKQSGTNTVKVVHEIKERIAELQAILPADIQLKVIRDQSRFIENSMH 343

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    + A LV + + + +   +  L+A  SI  +++ T A +  +G T+   ++ G+
Sbjct: 344 EVQVHLVLAAVLVSLTILLFMRDWRTTLIAALSIPTSMVATFAFMDFMGFTVNNITMLGL 403

Query: 421 VLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L +G+ VD  ++V+E I    +    S   +     +     +  + ++ L+  + + F
Sbjct: 404 ILAVGIVVDDAVVVHENIFRHMQEYQLSAMEAARSATAEIALAVVATTMSLLVIFLPVIF 463

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            G   G     F   +G SIL+SM  + ++   +    ++ +     +     +  +   
Sbjct: 464 MGGIVGRFFSSFGYVVGFSILMSMLISFTMTPMLCSRFLKLETGHHGEGGWFWQRIVAAY 523

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +++     W +  S +  + S  +LF       +      +  V  N P D ++ R+
Sbjct: 524 VAILRWAMRHRWVIVASSILVLFSTPVLFVAVGKDFVPKDDQSEFEVSVNLPEDYTLQRA 583

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +    ++     Q      +F+         +  Q  V +         +        ++
Sbjct: 584 DEVLTELDLRIRQLPGITDSFITIGDTTGRITKGQGEVNKATIYYRILPIAERDFSQFDV 643

Query: 657 VGP 659
           +  
Sbjct: 644 MSD 646



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/228 (17%), Positives = 83/228 (36%), Gaps = 6/228 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                   G    Q  D   + +++ Q           + E + +    +     ++   
Sbjct: 273 RLWTRAADGKNVSQAGDAAVSLIIQKQSGTNTVKVVHEIKERIAELQAILPADIQLKVIR 332

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                I   +    +  V+ + +  L  +     W   L A  ++   +  T  F    G
Sbjct: 333 DQSRFIENSMHEVQVHLVLAAVLVSLTILLFMRDWRTTLIAALSIPTSMVATFAFMDFMG 392

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N   +  ++  +G  V+D VVV++ + ++M+ Y   +S  +    +  E     V T
Sbjct: 393 FTVNNITMLGLILAVGIVVDDAVVVHENIFRHMQEYQ--LSAMEAARSATAEIALAVVAT 450

Query: 776 SMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPIL 820
           +M+  +  LP+   GG V     SF   + F I+++   S F   P+L
Sbjct: 451 TMSLLVIFLPVIFMGGIVGRFFSSFGYVVGFSILMSMLIS-FTMTPML 497



 Score = 40.8 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 18/127 (14%)

Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  I+S I M + +  +F+ +   +  + +L L I   +    L G   ++ A+  +  
Sbjct: 870 FIAFILSIIFMYMILAAQFESFIHPITILLSLPLTIPFAILSLILLGTNLDIYAMFGLFM 929

Query: 729 LIG-------YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
           L G         V+   V+              +   + I ++    L   + T++    
Sbjct: 930 LFGIVKKNGILQVDYTNVL----------RARGVPRDEAIIEANRTRLRPIMMTTVMLVA 979

Query: 782 SVLPMAV 788
           +++PMA+
Sbjct: 980 AMIPMAL 986


>gi|207741902|ref|YP_002258294.1| acriflavin resistance protein [Ralstonia solanacearum IPO1609]
 gi|206593288|emb|CAQ60215.1| acriflavin resistance protein [Ralstonia solanacearum IPO1609]
          Length = 1141

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 63/711 (8%), Positives = 168/711 (23%), Gaps = 74/711 (10%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G +        Q  + ++P+  P               +++    
Sbjct: 8   RPVFAWVLALFIIVAGAISI-----TQLPIAQYPTIAPP-------------SILITATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN--KITLSFADSRFKENIADKVT 116
                  L       +   +             +       IT++F            V 
Sbjct: 50  PGASAKTLDDAVTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V ++L     +  +     +   ++ +           +     I R  +++I  
Sbjct: 110 NRLKRVEARLPSSVTQQGVQVDKTRSNFLLFATLISKDGKMDPVALGDYISRNVLNEIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q +        +    DP++L     T   +       N        G       
Sbjct: 170 VPGVGQAVLFGT-ERAMRIWVDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +   V + G             T +    +   +    +        +      
Sbjct: 229 QP----IAATVVVEGQ---------MTTTEQFGNIVLVSKPDGSQVRVKDVARLELGGQT 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +    I+          +   T +        L           +         
Sbjct: 276 YATSARINGQPISAIGVQLSPTGNALGTAKAVKAKLDELSKYFPAGVEYKIPYDTSKFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   ++ L+    + ++++   A ++ LG ++ +  
Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLVFLQNIRYTLIPSIVVPISLLGAFATMNALGFSINVLX 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE--------------------------ENRKNQSVFC 450
                                                              +++      
Sbjct: 396 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMSQEGLPPRE 455

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIV 507
           +      +    I    +  +   + + FF G      R F+++M  SI  S   A+++ 
Sbjct: 456 ATRKAMGQITGAIIGITLVLMAVFIPMAFFSGSVGAIYRQFSLSMVASIFFSALMALTLT 515

Query: 508 RAMMIFI-------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
            A+   +         ++K                   ++     +     + I   +  
Sbjct: 516 PALCSTLLKPIEKGSHHEKKGFFGWFNRMFTSTTNHYQSLVERVLKKTFRYMVIYGVLIG 575

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             ++    L             +   +    +     L+ ++  +  +Q+    +N +  
Sbjct: 576 AVVVLFMRLPSSFLPNEDQGYIITNIQLPPAASANRTLDVIKQVERYYQHEKAVENIVAV 635

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
             +    +     ++    K  ++     T               IR  IV
Sbjct: 636 QGFSFSGNGPNAALVFTTLKDWSQRGADQTADAVAGRAFGALFGGIRDAIV 686



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 75/239 (31%), Gaps = 6/239 (2%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            F             +     +    + +         V  S            Q      
Sbjct: 784  FPNYGRQQRVIVQADRINRMQPEDIMNLFVRNTQGSMVPMSAFAKGHWIVGPVQLVRYNG 843

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +R+        +    ++ +++  +++      + T     + S       +  +  
Sbjct: 844  YPSIRISGDAATGASTGEAMDEMERLASKLPAGIGFEWTGQSLQEKSSGSQAPALYAL-- 901

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            S +A+ + +   ++ W      I  + L +   L    L  +  ++     ++ ++G S 
Sbjct: 902  SLLAVFLVLAALYESWSIPAAVILVVPLGVLGALLGVTLRVMPDDVYFKVGLIAVVGLSA 961

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
             + +++ +  +    L        +   ++++      + TS A  + VLP+A+  G+ 
Sbjct: 962  KNAILIIEFAKD---LQAQGKGLIEATLEAVHLRFRPIIMTSFAFILGVLPLAIATGAS 1017


>gi|229525529|ref|ZP_04414934.1| RND multidrug efflux transporter [Vibrio cholerae bv. albensis
           VL426]
 gi|229339110|gb|EEO04127.1| RND multidrug efflux transporter [Vibrio cholerae bv. albensis
           VL426]
          Length = 1036

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 171/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|123966244|ref|YP_001011325.1| preprotein translocase subunit SecF [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200610|gb|ABM72218.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9515]
          Length = 305

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 60/230 (26%), Positives = 115/230 (50%), Gaps = 8/230 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               + +    + +      N L+ ++           ++  V + +  +   S      
Sbjct: 78  KKFSNNKKLLNNIKLQIQNNNSLISIRTPYLTIEESNYLISNVDEVLGPLNYESKNSRI- 136

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GPK+ ++L+      +++S  A+ +YI IRF   +AL A+  L  D+    G F+  G
Sbjct: 137 -IGPKLGKKLLINCATSLLVSLFAISLYISIRFDKKYALFALLALFHDLFIVFGIFSWLG 195

Query: 716 ----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
               IE N     ++LT+ GYSVND VV++DR+R+N+K       F + I  S+NE+  R
Sbjct: 196 VLVSIEVNSLFAVSLLTIAGYSVNDTVVIFDRIRENLKQNP--EDFNNTIQISVNESFRR 253

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +++TS+   I +L + ++G   +  F++ ++ GI++ + SSI +A   L+
Sbjct: 254 TLFTSITTLIPLLTLMIFGSYSLFWFSVSLSLGILIGSYSSILLAPSFLI 303


>gi|294626425|ref|ZP_06705026.1| protein export protein SecF [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599310|gb|EFF43446.1| protein export protein SecF [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 322

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/282 (28%), Positives = 147/282 (52%), Gaps = 5/282 (1%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +    L+ +   I  M  R   + + ++ +  S+ ++   G NY ++F GG  +    
Sbjct: 1   MKIFPLHLVLNDTKIDPMTWRKPVLILMLVLAGASVGIIVGKGFNYALEFTGGTLVQTSF 60

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR---VLEMVKKKI 642
            + VD+  VR  L      +   QN  G    ++RLQ    ++        V + V+K +
Sbjct: 61  QKTVDVDQVREKLSRAGFENAQVQNARGGNEVMIRLQPHGQNNNRDDAARTVAKDVRKAV 120

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
           T     +T+   E VGP++ ++L   G+   +   +  LIYI  RF+W FA+ A  T + 
Sbjct: 121 TTDENPATVHPGEFVGPQVGKDLALNGVYATVFMLVGFLIYIAFRFEWKFAVVASLTALF 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D+  T+ F +L G EF+LT +A +L+++G+++ND +VV+DR+R+N +     +   ++++
Sbjct: 181 DLLVTVAFVSLAGREFDLTVLAGLLSVMGFAINDIIVVFDRVRENFRAL--RVEPLEVLN 238

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           +SIN+TL R+V T++  F+S L + ++GG  +   A     G
Sbjct: 239 RSINQTLSRTVITAVMFFLSALALYIYGGESMEGLAETHMIG 280


>gi|188528335|ref|YP_001911022.1| preprotein translocase subunit SecD [Helicobacter pylori Shi470]
 gi|188144575|gb|ACD48992.1| preprotein translocase subunit SecD [Helicobacter pylori Shi470]
          Length = 525

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 275/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L+    +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLTPLEQEELRKNTILQVIGIIRNRLDQFGLAEPI 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMKMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGTN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACMALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACMALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|319760368|ref|YP_004124306.1| protein-export membrane protein SecF [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039082|gb|ADV33632.1| protein-export membrane protein SecF [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 305

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 71/301 (23%), Positives = 150/301 (49%), Gaps = 3/301 (0%)

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                   P      F+        + I     S  ++  +  N+G+DF GG+ + V+++
Sbjct: 1   MPKIKDFTPHNKVYDFIFYGRDVFFVFIFLCAISFIVMKLYNFNWGLDFTGGLLIEVVSD 60

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV--AQTRVLEMVKKKITE 644
           + +D+  +R++           Q  +     ++            +Q    E++      
Sbjct: 61  KDLDIDKIRNSFIKFGFKTPVIQYLNNTNGGVIIRVPLMKGVSCFSQQIEKEILNILDHG 120

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           I     +Q    +GP  S+ LI+  I+   ++ + + +YI  RF+   ++    +LI DI
Sbjct: 121 INHQFVMQQINWIGPNSSKNLIKTTIIAFFMTFLCIFLYITYRFELTLSIATFISLIYDI 180

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             TLGF ++F IE N T + A+++ +GYS+NDK+V++DR+R+N    +  +S   + ++S
Sbjct: 181 IITLGFLSVFYIEINSTTITALISSMGYSLNDKIVIFDRIRENFSCMSK-LSCYAVFNRS 239

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + L R++ TS+   + +L + ++GG+++  F+I + FG+++   SSI++A+ +   + 
Sbjct: 240 LTQVLNRTIITSVTTIMVLLILLIFGGAMLYEFSITLLFGVIIGTISSIYVASFLAFRLK 299

Query: 825 D 825
           D
Sbjct: 300 D 300


>gi|255012845|ref|ZP_05284971.1| multidrug efflux membrane fusion protein [Bacteroides sp. 2_1_7]
          Length = 994

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/598 (12%), Positives = 171/598 (28%), Gaps = 44/598 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  +I   G +           +  FPS                 ++       D +   
Sbjct: 1   MMLVILLFGFI-----GYRFLGVREFPSVDQPII---------SVNVSYPGANADVIMNQ 46

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    ++  + +           Q  ++IT+ F  S   E  A+ V   +      L  D
Sbjct: 47  ITEPLEQNINGIPGIRSLSSVSSQGSSRITVEFELSVDMETAANDVRDKVSRAQRYLPRD 106

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                +         I+      +      +E S        +++   E+        + 
Sbjct: 107 CDPPTVSKADADASPIMQIAIRSN--KRSLMELSEIAELTVKERLQTIENVSGVDIWGQK 164

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +    DP ++     T   +       N            +  S     L       
Sbjct: 165 RYSMRLWLDPIKMAGYGVTPMDVKNAVDNENVELPSGSIEGNTISLSIRTLGL------- 217

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                          T K   D+   E                    +          + 
Sbjct: 218 -------------MHTAKEFNDLIIKEDNNNIVRFSDIGRAEVAPEDLRSLLKKNGEPMV 264

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +   +   +     + A      L+          +   N      S    + T    
Sbjct: 265 MTVIIPQPGANHIEIADEAYKRIEQLQKDLPEDVTIEMMYDNTRFIRASIGEVQQTIYEA 324

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV++++F+ +   +  LV    I ++++    ++ + G ++ + ++  +VL +GL VD
Sbjct: 325 FLLVVLIIFLFLRDWRVTLVPVVVIPVSLVGAFFVMYISGFSVNVLTMLAVVLSVGLVVD 384

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVR 486
             I+V E I     +  S   +   G    +  +  + IT +   + + F  G      +
Sbjct: 385 DAIVVAENIYVRIEQGMSPKEAGIEGSKEIFFAVVSTTITLISVFLPIVFMEGMTGRLFK 444

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F+I +  S+ IS F A++    +   +++ ++ K+        FF   + I  + + A 
Sbjct: 445 EFSIVIAGSVAISSFVALTFTPMLATKLLKRREKKNWFYRKTEPFFEGLNTIYAKSLNAF 504

Query: 547 FWGVGISILFSICSICLLFTHGLNY-----GIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                 SI   I     +     N       ++ +  I + +          +R   +
Sbjct: 505 LNHKIWSIPIVILLFGSIGYFWKNIRSELSPLEDRSMISVNMRGPEGATFEFIRDYAD 562



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 74/165 (44%), Gaps = 7/165 (4%)

Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +  +I++ + + + +  +F+ +   L  + T+ L I   L F +  GI  N+ +   ++ 
Sbjct: 830 MFAMILALLMIYLVLAAQFESFKDPLVVMFTVPLAIAGALMFMSYSGITMNIFSQIGIIM 889

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           LIG    + +++ +      +   + +S  + I  S  + L   + TS++  + ++P+  
Sbjct: 890 LIGLVAKNGILIVEFAN---QRQESGLSLPEAIRSSATQRLRPILMTSVSTILGLVPLVY 946

Query: 789 WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G          + +  G++V+   ++FI   +  FI   R KN
Sbjct: 947 ATGEGAQGRIAMGVAVVGGMLVSTFLTLFIVPAMYSFISTNRKKN 991



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 84/246 (34%), Gaps = 15/246 (6%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V    +RS L+      +            + +           + +E ++K + E V +
Sbjct: 247 VAPEDLRSLLKKNGEPMVMTVIIPQPGANHIEIA------DEAYKRIEQLQKDLPEDVTI 300

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + +          E+ +      ++  + + +++     W   L  +  + + +    
Sbjct: 301 EMMYDNTRFIRASIGEVQQTIYEAFLLVVLIIFLFL---RDWRVTLVPVVVIPVSLVGAF 357

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               + G   N+  + AV+  +G  V+D +VV + +          +S ++   +   E 
Sbjct: 358 FVMYISGFSVNVLTMLAVVLSVGLVVDDAIVVAENI---YVRIEQGMSPKEAGIEGSKEI 414

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               V T++      LP+    G        F+I +A  + +++  ++     +   +  
Sbjct: 415 FFAVVSTTITLISVFLPIVFMEGMTGRLFKEFSIVIAGSVAISSFVALTFTPMLATKLLK 474

Query: 826 WRAKNA 831
            R K  
Sbjct: 475 RREKKN 480


>gi|158339213|ref|YP_001520390.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acaryochloris
           marina MBIC11017]
 gi|158309454|gb|ABW31071.1| hydrophobe/amphiphile Efflux-1 (HAE1) Family protein [Acaryochloris
           marina MBIC11017]
          Length = 1087

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 75/574 (13%), Positives = 152/574 (26%), Gaps = 43/574 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G++           LD+ P   PK              + +  +
Sbjct: 11  KRPVLTTVCTIVIVLLGVIAMA-----LLPLDKLPQIAPK-------------QIAVRAN 52

Query: 62  EDDFVNGF-LQMYSDELRSFLKK-EGIGVFSMRQIQ---NKITLSFADSRFKENIADKVT 116
                    +   +  L   +   E +   +          I +SF   +        V 
Sbjct: 53  YVGVDAKTAVDNVTTVLEREINGTEDVKWMTSSTDNTGTATINVSFPVEKDTNISQVLVQ 112

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-----SHAIEQSMEIIRQRI 171
             +    S+L        + T  E     ++     ++        +       + R   
Sbjct: 113 NRVAQAQSELPPSVISTGVTTEKESPSVTLVYSLYSEKDEAGSYYYNPQFLYNYLDRYLW 172

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           +++   E              +    DP +L     T A +       N        G +
Sbjct: 173 NELKRIEGVGSLRAFGAAAYSMRLWLDPDKLAARGLTAADVVNAVQTQNFEVGAGGVGRQ 232

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                   +  +                 F        + +  +  G             
Sbjct: 233 PGLPQQQFELPL------------RVLGRFTTVEEAENIVVQSEADGTLIKVLDVGRAEL 280

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                               I       +   T E      A L A         +   N
Sbjct: 281 GVEDYFSQAVFDAKDPAVGLIVYQLPGTNALNTAELVKAKMAELSADFPRGLKAEIAHDN 340

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T A   GLV++++F+ +   +  L+   +I + ++ T+  L +LG T
Sbjct: 341 TLFINASLRDLLVTLAQAIGLVVLIIFIFLQDWRATLIPAVAIPVALVGTMIALLVLGFT 400

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITA 470
           L   ++   +L  GL VD  I++ E +  +  +      +            I  S +  
Sbjct: 401 LNQLTLFACILATGLVVDDGIVIVEAVSAKLSQGMRPRQAALDAMDELVGAVISTSVVLM 460

Query: 471 LIATVVLFFFGGGA--VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            +   V FF G      + FA+T+  +++ S F A++   +M    +R  +     +  L
Sbjct: 461 AVFIPVTFFPGTTGIVYKQFALTIAFAVVFSTFNALTFSPSMSGVFLRRAEPVKGPLGWL 520

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
              F           R             I    
Sbjct: 521 FPRFNRSFAWLKDHYRQLIEFFTRITPLIIGIFV 554



 Score = 80.9 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 87/245 (35%), Gaps = 7/245 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L V R+ L        +  +       L+  Q    +++    +++    +++   P   
Sbjct: 273 LDVGRAELGVEDYFSQAVFDAKDPAVGLIVYQLPGTNALNTAELVKAKMAELSADFPRGL 332

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLG 709
                          +R  +V +  +   +++ I+I    W   L     + + +  T+ 
Sbjct: 333 KAEIAHDNTLFINASLRDLLVTLAQAIGLVVLIIFIFLQDWRATLIPAVAIPVALVGTMI 392

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              + G   N   + A +   G  V+D +V+ + +       +  +  R     +++E +
Sbjct: 393 ALLVLGFTLNQLTLFACILATGLVVDDGIVIVEAV---SAKLSQGMRPRQAALDAMDELV 449

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  + TS+      +P+  + G+       FA+ +AF +V +  +++  +  +       
Sbjct: 450 GAVISTSVVLMAVFIPVTFFPGTTGIVYKQFALTIAFAVVFSTFNALTFSPSMSGVFLRR 509

Query: 827 RAKNA 831
                
Sbjct: 510 AEPVK 514



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 24/229 (10%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                    S    + +E V +   +        NT                V   +S I 
Sbjct: 835  IAPAPGYSSGQIIQAMEAVAEATLQPGFDYEWTNTAAEEKTAGG----AAPVVFGLSFIM 890

Query: 680  MLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEF------------NLTAVAAV 726
            + + +  +++ Y   L  + ++ L I   LG    F   F            N+ A   +
Sbjct: 891  VFLVLAAQYESYIDPLIIMLSVPLAILGALG-GIWFRATFLQAGGVWPVLNNNIYAQVGL 949

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG +  + +++ +   KN  L    +  R     +  +     V T+++     +P+
Sbjct: 950  VMLIGMASKNAILIVEFANKNRDL---GMKIRQAAIFASEQRFRAIVMTAISTLAGFIPL 1006

Query: 787  AV-WGGSVIG--SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +  G   +   S    +  G++VA   S+     + + I +      +
Sbjct: 1007 VIASGAGAVSRWSLGTAVFGGMLVATILSLIFVPILYIVIKNLEEDFLK 1055


>gi|153803508|ref|ZP_01958094.1| multidrug resistance protein, putative [Vibrio cholerae MZO-3]
 gi|124120954|gb|EAY39697.1| multidrug resistance protein, putative [Vibrio cholerae MZO-3]
          Length = 1036

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 171/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|187923453|ref|YP_001895095.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phytofirmans PsJN]
 gi|187714647|gb|ACD15871.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia phytofirmans PsJN]
          Length = 1070

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/521 (14%), Positives = 147/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   G L       PQ  + ++P   P               +V+    
Sbjct: 8   RPVFAWIVALAIVVAGALAI-----PQLPVAQYPRLAPP-------------RIVISAMY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
                  +       +   L      ++      N    +I  +FA     +     +  
Sbjct: 50  PGASTEVVDESVGSIIEESLDGADNMLYYQTTSDNLGELEIDATFAPGTNPDLALVDIQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L     +  +         ++L           +++ S  + R  + ++  +
Sbjct: 110 RLKQVEPRLPQQVVQQGISVFKAANTFLMLVALASTDGTRDSVQLSDYLSRYVLRELKRA 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP +LR+     A+++      N +      G        
Sbjct: 170 PGVGSAQLWDA-DEALRIWLDPMKLREYGLGAAEVNAAIAAQNATVTAGTLGDAPFVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K ++                 +    +                 +       
Sbjct: 229 QLTASVSVKGQL-------------ISPAEFGQIVLKARPDGSAVRLRDVARVELGRDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T        A L  G        +   N      
Sbjct: 276 SYYSRLNGKAAATVGIQLGPRGNALETSNAIRARLAELAKGLPSGVAIEIPFDNAHFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T A    LV  V+++ +   ++ LV    I + ++     +   G ++ + ++
Sbjct: 336 AIHEVLVTLAEAVVLVFFVMWLFLRDLRYTLVPTVVIPVTLMGAFLAMYACGLSINVFTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +     S+    I           V 
Sbjct: 396 FGLVLAIGILVDDAIVVVESVHRVMEEEGLPPREATRKAMSQIGGAIVGVTAVLTAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + FF    GG  R FA+ M  S+L+S F A+S+  A+   +
Sbjct: 456 MAFFPGGVGGIYRQFAVAMIASMLVSSFMALSLTPALCANL 496



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 84/238 (35%), Gaps = 12/238 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +        +       G+++  +  +     ++ + +P 
Sbjct: 260 VRLRDVARVELGRDNYSYYSRLNGKAAATVGIQLGPRGNALETSNAIRARLAELAKGLPS 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +V +  + + +   +W+  +   + L     + + +   
Sbjct: 320 GVAIEIPFDNAHFVKIAIHEVLVTLAEAVVLVFFVMWLFLRDLRYTLVPTVVIPVTLMGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKS 764
                  G+  N+  +  ++  IG  V+D +VV +   R+ +        +  R+   K+
Sbjct: 380 FLAMYACGLSINVFTMFGLVLAIGILVDDAIVVVESVHRVMEE-----EGLPPREATRKA 434

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++  G  V  +       +PMA + G V      FA+ M   ++V++  ++ +   +
Sbjct: 435 MSQIGGAIVGVTAVLTAVFVPMAFFPGGVGGIYRQFAVAMIASMLVSSFMALSLTPAL 492



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 11/164 (6%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S +A+ + +   ++ W   L  +  + L +   +    L G+  ++     ++T+IG
Sbjct: 879  IGLSLLAVFMALAALYESWTIPLAVLMVVPLGVIGAVAAVLLRGMPNDVYFKVGMITVIG 938

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++    R    LY   +     + ++        V TS A  + V+P+ V   
Sbjct: 939  LAAKNAILIVQFARD---LYQRGMPLTRAVTEAAGARFRPIVMTSAAFLLGVVPLVVSSG 995

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA----PILLFIYDWRA 828
             G     S    +  G++ A    +  A      +    +  R 
Sbjct: 996  AGAESRRSIGTGVFGGVLAATLFGLVFAPVAFHAVASLTHGRRR 1039


>gi|226226966|ref|YP_002761072.1| protein-export membrane protein SecD [Gemmatimonas aurantiaca T-27]
 gi|226090157|dbj|BAH38602.1| protein-export membrane protein SecD [Gemmatimonas aurantiaca T-27]
          Length = 556

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 139/550 (25%), Positives = 247/550 (44%), Gaps = 36/550 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDR---FPSAMPKNRISLGLDLRGGSHLV 57
           M N  + ++L + +    +    P  + + +          + +  +  GLDL+GG HL 
Sbjct: 1   MANLKYRILLIAALFAASVFALFPRTVVERVKREGVFVYDTVRRVPLKRGLDLQGGMHLT 60

Query: 58  LEVDEDDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIA 112
           LEVDE        +  L      +R  + + G+    +++  + ++ +        E   
Sbjct: 61  LEVDESKQTVADKSEALDRALKVVRQRIDEFGVAEPVVQKAGSERLIVELPGIDDAERAQ 120

Query: 113 DKVTL-------------FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           D V                L+ V  + +   K   +   +    +     +     ++  
Sbjct: 121 DVVQKSAFLEFQITDKTQALEKVVPRFDEIAKTQGITVASGTAAAAG--DSAKSTSVNSL 178

Query: 160 IEQSMEIIRQRIDQIGISESTIQRL---------GSHRILIQLPGEQDPSRLRQLLGTTA 210
           + Q+ +  +      G + +               ++    Q+PG+             A
Sbjct: 179 LTQNADSAKDSTAAAGTTGADTTIKAPVVTGGLFSTNVQPGQMPGQYIVPESAFPAIERA 238

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ---YLVEDKVEISGIHLNGATANFDPKTHK 267
                 +      K   +GV  L          Y+++ +  I+G  L  A          
Sbjct: 239 LQHPAILAAVPPGKVIRWGVDSLVSGAARFRALYVLDARPIITGEVLTDARPAT-DPVEG 297

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
            VV  + +  GARRF   T  ++   +A+VLD RV+TAP +N AI        G  T+++
Sbjct: 298 NVVQFTLNNEGARRFKTETGKHVRDNMAIVLDQRVVTAPTLNSAIGRNGQITLGGGTLQS 357

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  LA +LRAG+LP+ L + E R +GA LGSDSI KG  A+   L+L+++ M+V Y   G
Sbjct: 358 AQDLALVLRAGALPVPLKVAEVRQIGASLGSDSISKGVMALGVALLLVLVIMVVYYRFSG 417

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           ++A  ++ L ++ TLA+L+   A +TLP +AG VL IG+AVD+N+L+ ERIREE    +S
Sbjct: 418 VLAVIALVLYLVYTLAILAGFNAVVTLPGLAGFVLSIGMAVDNNVLIFERIREELDHGKS 477

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
              ++D GF  A   I D++   +++ +VL+ +G G VRGFA+T+   ++ ++FT I + 
Sbjct: 478 TRLAIDEGFRHALGAIIDTSAATILSGMVLYQYGTGPVRGFAVTLIAGLVAALFTTIFVT 537

Query: 508 RAMMIFIIRY 517
           +   +  +  
Sbjct: 538 KTFFLVWLNR 547



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 60/379 (15%), Positives = 139/379 (36%), Gaps = 13/379 (3%)

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            S     + A +T  D+ I A + T  LF       +     +                A
Sbjct: 184 DSAKDSTAAAGTTGADTTIKAPVVTGGLFSTNVQPGQMPGQYIVPESAFPAIERALQHPA 243

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           ++  +      K I     S         A+  + AR    G  +  +  +   +  + +
Sbjct: 244 ILAAVPPG---KVIRWGVDSLVSGAARFRALYVLDARPIITGEVLTDARPATDPVEGNVV 300

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            + ++ +G  +      + V  ++     + +                 +      G   
Sbjct: 301 QFTLNNEGARRFKTETGKHVRDNMAIVLDQRVVTAPTLNSAIGRNGQITL------GGGT 354

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            Q+     +  +   +     +     +G  +  + I KG++ + ++ + +L+ + + ++
Sbjct: 355 LQSAQDLALVLRAGALPVPLKVAEVRQIGASLGSDSISKGVMALGVALLLVLVIMVVYYR 414

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   + A+  L+L +  TL   A F     L  +A  +  IG +V++ V++++R+R+ + 
Sbjct: 415 FS-GVLAVIALVLYLVYTLAILAGFNAVVTLPGLAGFVLSIGMAVDNNVLIFERIREEL- 472

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                 S R  ID+     LG  + TS A  +S + +  +G   +  FA+ +  G+V A 
Sbjct: 473 --DHGKSTRLAIDEGFRHALGAIIDTSAATILSGMVLYQYGTGPVRGFAVTLIAGLVAAL 530

Query: 810 SSSIFIAAPILLFIYDWRA 828
            ++IF+     L   +   
Sbjct: 531 FTTIFVTKTFFLVWLNRSR 549


>gi|227498994|ref|ZP_03929131.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904443|gb|EEH90361.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 1045

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 76/688 (11%), Positives = 192/688 (27%), Gaps = 43/688 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I  +G + A+        + ++P                           
Sbjct: 9   PVFACVISIIIALVGSISAV-----SLPVAQYPQISNPRI---------SVSTNYVGANA 54

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGV 122
           + V   +    ++  + +        +     N  + + F      +    KV   +   
Sbjct: 55  EVVEQTVAQAIEKEVNGVDNMVDMRSTSDNDGNYTLDIKFDLGTDDDMDMVKVQNRVAQA 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N+ L  +     + T+ + E +I+             +        Q +D +   +   +
Sbjct: 115 NASLPSEVTSYGVTTSKQAEETIMYFSLLSPNGTYDELFLKNYGTTQFVDALKRVDGVSE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                   + L    DP ++ Q   T A +       N        G R   +    QY 
Sbjct: 175 VNEYG-PDLSLRVWLDPMKMAQNGLTAADVKSAITSQNIQAPVGSIGARPTENDQEFQYS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
              +  +      G              +I       +         +            
Sbjct: 234 ARLQGRLKTEEEFG--------------NIVLKNNNGQLLHLRDIARVEYGKRSDGVVGR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L      Q      +  +   ++     +         P     + + N      S    
Sbjct: 280 LDGIPAMQYTIQLNSDANSLESVAAIKKVLEEAEKNFPPDMKIEIVQDNTEYVKESLKEV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV+++ ++ +   +  L+   +I ++++ T     + G T+   ++  +VL
Sbjct: 340 GVTFIETLLLVVLITWIFLQSWRATLIPVLAIPVSLLGTFTSFYIFGFTINTLTLFALVL 399

Query: 423 GIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +    +    S   +           I  +    L   + + F G
Sbjct: 400 AIGIVVDDAIVVVEAVEYNVDEMGMSPKEATFAAMRSVSGAIVATAFVLLAVFLPVSFMG 459

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA+T+ +++ +S   A+S+  A+   +I+ KK       P+ + F + +  
Sbjct: 460 GATGVLYKQFALTIVVALSLSAVVAMSLSPAVSALVIKPKKDLKKATGPIGKLFDVFNRA 519

Query: 539 AIQFMRAR---------FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                             + VG++ +  +  +   F   +             +++    
Sbjct: 520 LEWATEKYVGLSKKLLSHYKVGLAGMLVVFCLIGFFFKMIPTAYVPDEDQSFMLVSASLP 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             +    ++   +          G ++ +  +      S  Q   + +  K         
Sbjct: 580 AAASTNRSMAFTESFGAKIAEIPGVRHVMQIIGMDVLSSTRQPNGVLIPVKLNDIGDREG 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISA 677
               +          +        + + 
Sbjct: 640 KNGQSVQEIINKVAAMGADAPEATVRAF 667



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 78/230 (33%), Gaps = 25/230 (10%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            + ++L        +   + +++++      P   I+  +     +   L   G+  +  
Sbjct: 287 QYTIQLNSDANSLESVAAIKKVLEEAEKNFPPDMKIEIVQDNTEYVKESLKEVGVTFIET 346

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY--- 732
             + +LI       W   L  +  + + +  T   F +FG   N   + A++  IG    
Sbjct: 347 LLLVVLITWIFLQSWRATLIPVLAIPVSLLGTFTSFYIFGFTINTLTLFALVLAIGIVVD 406

Query: 733 -------SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
                  +V   V                +S ++    ++    G  V T+       LP
Sbjct: 407 DAIVVVEAVEYNV------------DEMGMSPKEATFAAMRSVSGAIVATAFVLLAVFLP 454

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++  GG+       FA+ +   + ++A  ++ ++  +   +   +    +
Sbjct: 455 VSFMGGATGVLYKQFALTIVVALSLSAVVAMSLSPAVSALVIKPKKDLKK 504



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 64/160 (40%), Gaps = 13/160 (8%)

Query: 673  VIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +I +   + +Y+    +   W   LG I  +   +   +GF  L G+  ++     ++ L
Sbjct: 876  MIFAVSLIFVYLCLSALYESWSLPLGIIFGVPTAVMGCVGFQYLRGLSADIYMQIGMIVL 935

Query: 730  IGYSVNDKVVVYD--RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            IG S  + +++ +  +MR          +    +  ++   L   + T+ +  I  +P+A
Sbjct: 936  IGLSAKNSILIVEYAKMR-----VDNGRAILPALIDTVKVRLRPILMTAFSTVIGAVPLA 990

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 G     S    +  G++ +   SIF+   + L I 
Sbjct: 991  WASGAGSGSRISIGTAIIGGMMSSTLLSIFLVPVLFLVIE 1030


>gi|295700986|ref|YP_003608879.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1002]
 gi|295440199|gb|ADG19368.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1002]
          Length = 1061

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 74/621 (11%), Positives = 167/621 (26%), Gaps = 54/621 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   +   G L        Q  + ++P   P               +V+    
Sbjct: 8   RPVFAWVIAFAVMVAGALAT-----TQLPVSQYPRLAPP-------------RVVISATY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   L    G+  +          +I + F      E     V  
Sbjct: 50  PGATAEQIDSDVASLIEQSLDGATGLSYYETTSDGLGELEIDVMFMPGTNPELAMVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L     +  +         ++L           +   S  + R  + ++  +
Sbjct: 110 RLKQVEPRLPRQVVQQGISVFNAANTFLMLVTLVSTDGARDSTTLSDYLNRYLLRELKRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +LR+   + A +S      N++      G        
Sbjct: 170 PGVGSAELWDA-DEAMRIWLDPVKLREYSLSPADVSAAIRAQNSTVTAGAIGDAPATAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    ++                 +    +   + G           +       
Sbjct: 229 ALTASVNVHGQL-------------RTPAEFAAIVLKAQPGGGVVRLGDVARVEVGRDSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 TFWSRLNGHSAATVGIQLGPLGNALATSNAIRARIDALSKTLPAGIDVRIPYDGAHFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV  V+++ +   ++ LV    I + ++ +   +   G ++ + ++
Sbjct: 336 AIKEVVLTLCEAIVLVFCVMWLFLREVRYALVPTVVIPVTLLGSFLAMHAFGLSINVFTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    + +  +   +      +    I       +   + 
Sbjct: 396 FGLVLAIGILVDDAIVVVENVERIMHEEGLAPREATRKAMRQIGGAIVGVTAVLIAVFLP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-------------KKM 520
           + FF    GG  R F+I M  +IL+S F A+S+  A+   +++              + +
Sbjct: 456 MAFFSGGVGGIYRQFSIAMISAILVSAFMALSLAPALCANLLKPPRDRNALRGGVAARCL 515

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
                            +A    R++        L S  ++      G     + +G +Q
Sbjct: 516 AKFSSGFDGATRRYGVWVARWLGRSKLAFAVHLALISAAAVLYAAMPGGFLPTEDQGQLQ 575

Query: 581 LGVLANRPVDLSVVRSNLESL 601
           + V            + L  +
Sbjct: 576 VMVQLPSGASQERTFAVLRQV 596



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/194 (17%), Positives = 81/194 (41%), Gaps = 6/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRF 688
           A +  +      +++ +P          G    +  I++ ++ +  + + +   +W    
Sbjct: 301 ATSNAIRARIDALSKTLPAGIDVRIPYDGAHFVKIAIKEVVLTLCEAIVLVFCVMWLFLR 360

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +  +AL     + + +  +      FG+  N+  +  ++  IG  V+D +VV + +    
Sbjct: 361 EVRYALVPTVVIPVTLLGSFLAMHAFGLSINVFTLFGLVLAIGILVDDAIVVVENV--ER 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            ++   ++ R+   K++ +  G  V  +       LPMA + G V      F+I M   I
Sbjct: 419 IMHEEGLAPREATRKAMRQIGGAIVGVTAVLIAVFLPMAFFSGGVGGIYRQFSIAMISAI 478

Query: 806 VVAASSSIFIAAPI 819
           +V+A  ++ +A  +
Sbjct: 479 LVSAFMALSLAPAL 492



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S +A+ + +   ++ W   L  +  + L I   +    L G+  ++     V+T+IG
Sbjct: 873  LALSLLAVFMALAALYESWTIPLSVLIVVPLGIIGAVAAMFLRGLPNDIYFKIGVVTVIG 932

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++    R    L+       D I ++        V TS A  + V+P+     
Sbjct: 933  LAGKNAILIVQFARD---LHARGAGLADAIVEACTMRFRPIVMTSAAFLVGVVPLVFSTG 989

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G     S    +  G++VA    +    
Sbjct: 990  GGAESRHSIGTGVFGGMIVATILGLIFTP 1018


>gi|254520941|ref|ZP_05132996.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14]
 gi|219718532|gb|EED37057.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14]
          Length = 1056

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 70/573 (12%), Positives = 160/573 (27%), Gaps = 37/573 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P + +            V     
Sbjct: 10  RPIFAAVLSIVIFAAGLITI-----PILPISEYPEVVPPSVVVR---------TVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  EG+         + +   T++F      +  A KV   +
Sbjct: 56  PKVIAETVATPLEEAINGV--EGMMYLKSVAGSDGVLQMTVTFRPGTDPDAAAVKVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +    +++      Q     +           D +     
Sbjct: 114 AQAQARLPEDVRRQGVTTQKQSPTFLMVVHLTSPQGKYDTLYLRNYARLHVKDALARIPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP ++     T + +       N        G   L DS   
Sbjct: 174 VGDAQIFGGGDYAMRAWLDPDKVASRGLTASDVVRAMREQNVQVSAGQLGAEPLPDSQFL 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             +       +                +    +    +            +         
Sbjct: 234 TLINAQGRLKT--------------EKEFGDIVLKSGVDGEIVRLADVARLELGAGDYTL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +        ++                     S 
Sbjct: 280 RSQLDGKNAVGIGIFQSPGANALEIRDQVISTMDEMQKTMPADVKYEAVYDTTIFVRDSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   S+ G
Sbjct: 340 KAVVSTLLEAIALVVLVVILFLQTWRASIIPLIAVPVSVVGTFAALYLLGFSINTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 400 LVLAIGIVVDDAIVVVENVERNIEEGLSPTAAAHQAMREVSGPIVAIALVLCAVFVPMAF 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIP 535
                G   + FA+T+ +S +IS   ++++  A+    +  +   K      + R F   
Sbjct: 460 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAARLLKAHGAPKDGPSRLIDRLFGWV 519

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                +F ++        +   +     +F   
Sbjct: 520 FRPFNRFFKSSSEKYERGVARILGRRGAVFVVY 552



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 86/284 (30%), Gaps = 13/284 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              +    F           G  +  V     +     R  +  +       Q F  +   
Sbjct: 762  YVNDFNQFGRTWQVIAQADGPFRETVEDIGKLRTRNDRGEMVPIGSMVTIKQTFGPDPVL 821

Query: 618  LVRLQYQPGDSVAQTRVL---EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                      +      L        K+TEI               +S +   +G    I
Sbjct: 822  RFNGYPAADLAGEADPRLLSSAEAMNKLTEIAGKVLPVGMTTEWTDLSYQQATQGKAAFI 881

Query: 675  ISAIAM----LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +  +A+    L+   +   W   L  I  + + +   L    L G + N+     ++ L+
Sbjct: 882  VFPVAIMLAFLVLAALYESWSLPLAVILIVPMTLLSALFGVWLTGGDNNVFVQVGLVVLM 941

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G +  + +++ +  R+   L        +   ++    L   V TS+A     +P+ +  
Sbjct: 942  GLACKNAILIVEFARE---LEMGGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVLSH 998

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G  V     I +  G++      +F+     + +  +  +N 
Sbjct: 999  GAGAEVRSVTGITVFAGMLGVTLFGLFLTPVFYVALRKFVTRNG 1042



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 364 WRASIIPLIAVPVSVVGTFAALYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIE 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  V  ++      +PMA   G        FA+ +A   V
Sbjct: 424 E---GLSPTAAAHQAMREVSGPIVAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTV 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 ISAINSLTLSPALAARLLK 499


>gi|116621483|ref|YP_823639.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224645|gb|ABJ83354.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1574

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 77/588 (13%), Positives = 172/588 (29%), Gaps = 47/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L   +  +G             +D FP       +           +V    
Sbjct: 10  RRPVFATMLVLSLVVVGTF-----CYFSLGVDLFPKVDIPTVV---------VTIVNPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + + +      +  + Q+ +T+ F  S+  +  A +V   +  
Sbjct: 56  SPEEVETEITKKVEDAVNTISQVDELRSTSSEGQSLVTIQFELSKNGDVAAQEVQNKVNL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + +KL    K  ++         I+    + +       + ++   +Q   ++  +    
Sbjct: 116 IVNKLPETAKAPIVQKFDPDATPILQIAVSAN---RSLRDVTLIADKQIKQKLENARGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    DP RLR    T   +       N    G          S     
Sbjct: 173 QITIVGGARREIHVMVDPDRLRSYNLTINDVFAALRTQNLELPGGNLSAGSKELSVRTTG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D                     +    ++                            
Sbjct: 233 RIVDA--------------------EQFNQVTIANRNGYAVKVADIGVAEDSYEEPRSAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        I + ++ ++   T +      A +     P     V          +   
Sbjct: 273 RLDGVPAVTLIVAKQSGVNTVATSDEVKDRLAEIVKTLPPDIHASVISDQSVFIKAAVEN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K      +    I++F  +   +  L+A  +I  ++I T AL++ +G TL   ++  + 
Sbjct: 333 IKHHLIEGSFFAAIIIFFFLANIRTTLIAAIAIPTSIISTFALMAAMGFTLNQITMLALT 392

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L +G+ +D  I+V E I      K+   F +   G       +  + ++ L   + + F 
Sbjct: 393 LMVGIVIDDAIIVLENIYRYIEEKDMPPFQAAIQGTKEIGLAVMATTLSLLAVFLPVGFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSRF 531
           G   G  +  F  T   +I +S+  + ++   +    I+        +  S +       
Sbjct: 453 GGIVGRFMSSFGFTSAFAIAVSLLVSFTLTPMLCSRFIKRPEPVGPGQHASKESFIFKHL 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                 +    M  R   V IS+   +  + L    G N+        
Sbjct: 513 DTSYTRMLKWSMAHRKTVVAISVGVILSMVPLFMFVGKNFLPQDDQSQ 560



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/134 (20%), Positives = 50/134 (37%), Gaps = 6/134 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L A   +   I  T    A  G   N   + A+  ++G  ++D ++V + +     
Sbjct: 355 IRTTLIAAIAIPTSIISTFALMAAMGFTLNQITMLALTLMVGIVIDDAIIVLENI--YRY 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +       +   E     + T+++     LP+   GG V   + SF    AF I 
Sbjct: 413 IEEKDMPPFQAAIQGTKEIGLAVMATTLSLLAVFLPVGFMGGIVGRFMSSFGFTSAFAIA 472

Query: 807 VAASSSIFIAAPIL 820
           V+   S F   P+L
Sbjct: 473 VSLLVS-FTLTPML 485



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 49/546 (8%), Positives = 133/546 (24%), Gaps = 58/546 (10%)

Query: 12   SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             +   +G+++++         +  P            D +   ++++    +        
Sbjct: 530  VVAISVGVILSMVPLFMFVGKNFLPQ-----------DDQSQYNVLIR-TPEGTSIAATT 577

Query: 72   MYSDELRSFLKKE-GIGVFSMRQIQN--------KITLSFADSRFKENIADKVTLFLQGV 122
              ++ +   ++   G+    M    +         I +   D   +     ++    + +
Sbjct: 578  NLAERIAQEVRGLPGVAHTLMTAGGSADKSVNNASIYVKLTDIDQRTVTQQQLMQRTRDL 637

Query: 123  NSKLNVDPKKNLLVTTT----EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
              K   +    + + ++    +    I       D        Q++    + +  +    
Sbjct: 638  MKKYPPEIHTGVELVSSVGGNQSNAEIQYYIQGPDLKKLADYSQALLTKMRAMPAL---- 693

Query: 179  STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
               Q         ++    D  R   L  +   +          +    F          
Sbjct: 694  -VDQDSTLRSGKPEVRLIIDRPRAADLGVSVMDIEQALNTLVAGQAASTFNA-------- 744

Query: 239  NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                        G            +    V  ++   + +R+   V  D + K      
Sbjct: 745  ------------GDDQYDVVVRAQEQFRGSVEGLAKMTVPSRKVGSVGLDEVVK--IEPG 790

Query: 299  DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
             G      +  Q   +  A +    +            A                 +LG 
Sbjct: 791  TGPSSVNRIARQRQVTLSANLKPGGSQAAVIQQLNEASAQLNMEPGYHSGLAGASKELGR 850

Query: 359  DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG--ATLTLPS 416
                    A     + + + +   +  +       I L + +   +LSLL    T+ + S
Sbjct: 851  TGY-YFALAFSLTFIFMYIVLAAQFESFIHPITILITLPLAVPFGILSLLIAGQTVNIFS 909

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              G++L  G+   + IL  +          + + ++          I  + I  +     
Sbjct: 910  GLGLLLLFGIVKKNAILQIDHTNGLREAGMNRYDAIIQANRDRLRPILMTTIALVAGMAP 969

Query: 477  LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            L      G    R   + +     + +   +  V              +         +L
Sbjct: 970  LVISHGTGSATNRSIGVLVVGGQSLCLILTLLAVPVFYSLFEDLADGFAHGRVARVFGWL 1029

Query: 534  IPDCIA 539
                  
Sbjct: 1030 RRRVTK 1035



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 84/235 (35%), Gaps = 11/235 (4%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L+ +   +         +    R      +         ++++       L+        
Sbjct: 781  LDEVVKIEPGTGPSSVNRIARQRQVTLSANLKPGGSQAAVIQQLNEASAQLNMEPGYHSG 840

Query: 658  GPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFFALF- 714
                S+EL R G    +  S   + +YI +  ++   +  IT LI L +    G  +L  
Sbjct: 841  LAGASKELGRTGYYFALAFSLTFIFMYIVLAAQFESFIHPITILITLPLAVPFGILSLLI 900

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   N+ +   +L L G    + ++  D       L    ++  D I ++  + L   +
Sbjct: 901  AGQTVNIFSGLGLLLLFGIVKKNAILQIDH---TNGLREAGMNRYDAIIQANRDRLRPIL 957

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             T++A    + P+ +    G +   S  + +  G  +    ++ +A P+   +++
Sbjct: 958  MTTIALVAGMAPLVISHGTGSATNRSIGVLVVGGQSLCLILTL-LAVPVFYSLFE 1011


>gi|229512989|ref|ZP_04402455.1| RND multidrug efflux transporter [Vibrio cholerae TMA 21]
 gi|229349882|gb|EEO14836.1| RND multidrug efflux transporter [Vibrio cholerae TMA 21]
          Length = 1036

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/651 (9%), Positives = 171/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGIVPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTSSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MAANMDLVEQRLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 48/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMLTVPMGVFGGFLGLFVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            + F   I  +    L   + T+       +P+ V    G     +    + FG+  A   
Sbjct: 937  VEFEKAIIDASARRLRPILMTAFTTLAGSIPLIVSTGAGYESRIAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|56696281|ref|YP_166638.1| hydrophobe/amphiphile efflux-1 family protein [Ruegeria pomeroyi
           DSS-3]
 gi|56678018|gb|AAV94684.1| hydrophobe/amphiphile efflux-1 family protein [Ruegeria pomeroyi
           DSS-3]
          Length = 1042

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 62/520 (11%), Positives = 146/520 (28%), Gaps = 40/520 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G +           + +FP   P               + +  + 
Sbjct: 9   RPKLAFVISLVLTILGGI-----GYLVLPVAQFPDITPPV-------------VSVSANY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   +     N    ++++F      +  +  V  
Sbjct: 51  TGANAETVENAVAAPIEAQVNGVDDMLYMTSTSADNGSYSLSVTFEVGTDPDIASVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L  +   + +VT       +++           ++  S        D +   
Sbjct: 111 RVAQALSSLPSEVTNSGVVTQKSSTNMLMVVTLTSPNDTYDSVFLSNYASINLKDALARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +      +   +    DP ++  L  T   +       N        G     +  
Sbjct: 171 QGVGKADVLTDLQYAMRMWMDPDKMAALSITPGDLIAAVREQNLEVSAGQIGAPPAPEGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY ++ K  +S +              +    +                 +       
Sbjct: 231 TFQYTIKSKGRLSTVE-------------EFENIVIRTGAAGAVVRVRDIARVELGAQFY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +     E        L           +          
Sbjct: 278 SASGYYQGKPATVLGIYQAPGANALAVSERVTAELERLSRAFPEDVDYEIPFNTTDFVEQ 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T  +   LV+ V+F+ +   +  LV   +I +++I T A L   G +L   S+
Sbjct: 338 SLNDVVTTLMLTFVLVVSVVFVFLGNWRATLVPAVAIPVSLIGTFAFLLAFGMSLNTISL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +      +  S   +      +    +  + +  L   V 
Sbjct: 398 FALVLAIGIVVDDAIVVVENVERIIAEEGLSPPEATRKAMGQITGPVIATTLVLLAVFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
           + F     G     FA+T+ +++ IS   A+++  A+   
Sbjct: 458 VTFMPGITGRLYSQFAVTISVAVAISSINALTLSPALCGL 497



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 48/446 (10%), Positives = 135/446 (30%), Gaps = 27/446 (6%)

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
            L  L        + G  +  GL+ +  +++         + Q    S D    R  +  +
Sbjct: 595  LQQLDGVANTVLVNGFSMLNGLSPNGAMIIVN--LTNWDQRQDPELSADALLKRILNIAW 652

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              +  +++A       G G   G              +A  +  A+   +    +   I 
Sbjct: 653  GESAASIVAFNPPPIQGLGMSAGI---EMEVQQTGGGSAQDLAAAVGSLVYAANQRPEIG 709

Query: 525  INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             +  +    +P                            L ++ +N    F    ++ + 
Sbjct: 710  QSYTTFRANVPQLFVDLDREKAKTLQVSVAEVFQTMQAHLGSYYINDFNLFGRVYRVMIQ 769

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDG-------------EKNFLVRLQYQPGDSVAQ 631
            A       V       ++                        +++ L R           
Sbjct: 770  AEGSYRDKVEDIGNLYVRSQQGQMVPLGTLIDVENVLGPVLLKRHNLFRSATVTAVPAPG 829

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RF 688
                + ++    E                  ++L   G+V VI+    +  Y+++     
Sbjct: 830  LSTGDAIQVMTEESANALPPGYAFEWTGSAQQQLSSGGLVAVILGLAVLFAYLFLVGQYE 889

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + ++I+ +   +   A+ G + NL     ++ L+G +  + +++ +   +  
Sbjct: 890  SWSMPVSILLSVIVALFGAVAAVAVVGSDINLYTQIGMIMLVGMASKNGILIVEFAMEQR 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +S R+   ++ ++     + T+++  + V+P+      G +   +  + +  G+
Sbjct: 950  A---KGLSIREAAAEAAHQRFRAVMMTALSFLLGVVPLLTANGAGAASQKAIGVAVFGGM 1006

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            + A    + +   +   +   R +  
Sbjct: 1007 LAATVIGVVLVPVLYAVMQGARERIK 1032



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 52/125 (41%), Gaps = 4/125 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T  F   FG+  N  ++ A++  IG  V+D +VV + +     
Sbjct: 364 WRATLVPAVAIPVSLIGTFAFLLAFGMSLNTISLFALVLAIGIVVDDAIVVVENV--ERI 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGIVVA 808
           +    +S  +   K++ +  G  + T++      +P+    G     ++   +   + VA
Sbjct: 422 IAEEGLSPPEATRKAMGQITGPVIATTLVLLAVFVPVTFMPGITGRLYSQFAVTISVAVA 481

Query: 809 ASSSI 813
             SSI
Sbjct: 482 I-SSI 485


>gi|304321866|ref|YP_003855509.1| AcrB/AcrD/AcrF family protein [Parvularcula bermudensis HTCC2503]
 gi|303300768|gb|ADM10367.1| AcrB/AcrD/AcrF family protein [Parvularcula bermudensis HTCC2503]
          Length = 1071

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 66/526 (12%), Positives = 151/526 (28%), Gaps = 34/526 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G++      L    + ++P     +            +       
Sbjct: 8   RPVLAWVISIIIMLAGVMA-----LRVLPVAQYPDIASPSV---------SINANYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGI-GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    +   + L         S     + ITL+F+     +    +V   L  
Sbjct: 54  ARAVEDSVTQVIERQMTGLDGLTYFSSTSSSSGTSSITLTFSPGTDPDIAQVQVQNKLSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +  T      +++             + +  +    +D +   +   
Sbjct: 114 ATPLLPDVVQRQGVSVTKSNSSFLLIVGATSPTGEYDQTDIADWLRSNLVDPVSRIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     T   +       N        G            
Sbjct: 174 NLQLFGAQ-YAMRIWLDPDQLSAFGLTPGDVVAAIREQNTQVSSGELGGAPSLAGQEITA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +S                +                      +           
Sbjct: 233 TITLQSLLS-------------TPEEFKNIFLKTTQEGGDVRLRDVARVELGAESYNFVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +      +    +  A  +   T E     +  ++          I    +      S  
Sbjct: 280 LWNGKPASGFGVNLAAGANALDTAEAVKARIGELIELNLPEGMEIIYPFDSTPFVEKSIH 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T     GLVLIV+ + +   +  +V   ++ + ++ T A+L   G ++   ++  +
Sbjct: 340 EVEKTLYEAIGLVLIVMLVFLQSFRATIVPMIAVPVVLLGTFAILLAFGFSINTLTMFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLF 478
           VL IGL VD  I+V E +         S   +     ++     I  + + + +   + F
Sbjct: 400 VLAIGLLVDDAIVVVENVERVIEEDGLSAPEATRKSMTQITGALIGIATVLSAVFVPMAF 459

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           F G  G   R F+IT+  ++++S+  AI +  A+   +++ K  K 
Sbjct: 460 FPGSAGIIYRQFSITIVSAMILSVVVAIVLSPALCAKLLKAKPHKE 505



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 82/218 (37%), Gaps = 8/218 (3%)

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                      N              + R+ E+++  + E + +    ++     K   E
Sbjct: 281 WNGKPASGFGVNLAAGANALDTAEAVKARIGELIELNLPEGMEIIYPFDSTPFVEKSIHE 340

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           + +     + +  I ML+++     +   +  +  + + +  T      FG   N   + 
Sbjct: 341 VEKTLYEAIGLVLIVMLVFLQ---SFRATIVPMIAVPVVLLGTFAILLAFGFSINTLTMF 397

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A++  IG  V+D +VV + +     +    +S  +   KS+ +  G  +  +       +
Sbjct: 398 AMVLAIGLLVDDAIVVVENV--ERVIEEDGLSAPEATRKSMTQITGALIGIATVLSAVFV 455

Query: 785 PMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           PMA + GS   +   F+I +   ++++   +I ++  +
Sbjct: 456 PMAFFPGSAGIIYRQFSITIVSAMILSVVVAIVLSPAL 493



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 82/263 (31%), Gaps = 9/263 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  +   ++ V       + +          G    Q ++G     ++ Q  PG S  + 
Sbjct: 794  MMPEDIEKIRVRNASGDMIPLNAFTEMEWSYGSPQLQRYNGVSAMNIQGQAAPGISSGEA 853

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                                   +       +      + ++I  + +     +   W  
Sbjct: 854  MAEMARMIGDLPSGIGFEWTGLSLEEQTSGSQTPLLYALSILIVFLCLA---ALYESWTI 910

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  + L I   L      G+  ++     +LT IG +  + ++V +  +    L  
Sbjct: 911  PVSVLLVMPLGIAGALLATWSRGLANDIFFQVGMLTTIGLASKNAILVVEFAKD---LEA 967

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAA 809
               +  +   ++    L   + TS+A    V+P+A+  G+   +       +  G++ + 
Sbjct: 968  RGYALVEATVEAARVRLRPILMTSLAFGFGVVPLALSSGAGAAARTAIGSAVVGGVLAST 1027

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
               IF A    + I        R
Sbjct: 1028 IFGIFFAPLFYVLIRRLTGARRR 1050


>gi|317152566|ref|YP_004120614.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316942817|gb|ADU61868.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio aespoeensis Aspo-2]
          Length = 1066

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 64/577 (11%), Positives = 153/577 (26%), Gaps = 41/577 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +           +D++P   P               + ++   
Sbjct: 9   RPVFAFVVSILIMLGGTVAIFV-----LPVDQYPQITPPT-------------IQIDASY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG--IGVFSMRQIQNKITL--SFADSRFKENIADKVTL 117
                    +  +  +   L      +   S+      + +  +F     ++  A +V  
Sbjct: 51  PGADAKTAAESVASPIEQQLSGIKNLLYFSSLCSNNGAVKVVCTFEIGTDQDLAAVEVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L  +  +  +  T      + +            I  S       +D +   
Sbjct: 111 RLAIAEPRLPTEVTRQGVTVTKSSTSMLTVLSLES-DGRYDDIYLSNYATINMLDMLKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +L     T  +++      N        G R  +   
Sbjct: 170 PGVGDVAVFGTKDYSMRIWVNPDQLAARGLTVTEVAEAIREQNAVFPAGTIGQRPTKGEV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +              +       I                 +       
Sbjct: 230 ELTVPVLTRGRL-------------QEVADYENIILVANSDGSILRLKDVARVELGAQSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +            +   +   T++          +         +          
Sbjct: 277 DMFGRVNGKPTTLLPVYLQVGANALDTLDGVKAAMESAASSFPEGVSYSMPHDTTLFIRD 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LVL+V+F+ +   +  L+   ++ + +I T   +  LG ++   ++
Sbjct: 337 SMAEVIHTLLEAVLLVLVVVFVFLQSWRATLIPLLAVPVAIIGTFGGMLALGFSINTLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +             +      +    +    +      V 
Sbjct: 397 FGLVLAIGIVVDDAIIVVENVERIMEHDGLGPREATIKAMEQVTGPVIAIVLVLSAVFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   R FA+T+ +S+ IS   A+++  A+   I++    +   +        
Sbjct: 457 VAFLGGLTGQLYRQFAVTIAVSVAISGLVALTLSPALCRLILKPGHGQKAKVFQWFDACF 516

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
               +       +        L     +CL+      
Sbjct: 517 DKMTLGYTEGVRKAIRRVPVSLGIFGLLCLITFGMQR 553



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 67/170 (39%), Gaps = 9/170 (5%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAA 725
            +    +    + + + +  +++ +    A+   +L I       A++  G+  ++     
Sbjct: 869  QAPKVLAFGILVVFLVLAAQYEMWSLPIAVLG-VLPIAVMGALMAVWSRGLVQDIYFQIG 927

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +LTL+G S  + +++ +     +  Y + +   +   ++        V TS+A  + V+P
Sbjct: 928  LLTLVGLSAKNAILIVEFC---VASYRSGMGLVESALEAARLRFRPIVMTSLAFILGVVP 984

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +A+    G +   S    +  G+  A S +IF      + I        +
Sbjct: 985  LAISSGAGSAARHSIGTGVIGGMAAATSIAIFFVPLFFVLIQRGSEYVRK 1034



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 54/134 (40%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + I  T G     G   N   +  ++  IG  V+D ++V + +    
Sbjct: 362 SWRATLIPLLAVPVAIIGTFGGMLALGFSINTLTMFGLVLAIGIVVDDAIIVVENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +  R+   K++ +  G  +   +      +P+A  G   G +   FA+ +A  +
Sbjct: 420 IMEHDGLGPREATIKAMEQVTGPVIAIVLVLSAVFVPVAFLGGLTGQLYRQFAVTIAVSV 479

Query: 806 VVAASSSIFIAAPI 819
            ++   ++ ++  +
Sbjct: 480 AISGLVALTLSPAL 493


>gi|33861485|ref|NP_893046.1| preprotein translocase subunit SecF [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634062|emb|CAE19387.1| preprotein translocase subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 305

 Score =  167 bits (423), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/212 (28%), Positives = 111/212 (52%), Gaps = 8/212 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             N L+ ++           ++  V K +  +   S       +GPK+ ++L+      +
Sbjct: 96  NNNSLISIRTPYLTIEESNDLISNVDKILGPLDYDSKNSRI--IGPKLGKKLLTNCATSL 153

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTL 729
           ++S  A+ +YI IRF   +AL A+  L  D+    G F+  G    IE N     ++LT+
Sbjct: 154 LVSLFAISLYISIRFDKKYALFALLALFHDLFIVFGIFSWLGVLLSIEVNSLFAVSLLTI 213

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            GYSVND VV++DR+R+N+K    S ++  +I  S+NE+  R+ +TS+   I +L + ++
Sbjct: 214 AGYSVNDTVVIFDRIRENLKK--DSDNYNKIIQISVNESFRRTFFTSITTLIPLLTLIIF 271

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           G   +  F++ +  GI++ + SSI +A   L+
Sbjct: 272 GSYSLFWFSVSLTLGILIGSYSSILLAPSFLI 303


>gi|154246302|ref|YP_001417260.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Xanthobacter
           autotrophicus Py2]
 gi|154160387|gb|ABS67603.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Xanthobacter autotrophicus Py2]
          Length = 1059

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 67/551 (12%), Positives = 152/551 (27%), Gaps = 41/551 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ +++  +G +        +  + ++P   P               + +    
Sbjct: 10  RPIFASVVSAVVMILGAVT-----YLRLPVAQYPDIAPPV-------------ITVTGQY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEGIG---VFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  + +     +   +           +        I+++F      +    +V  
Sbjct: 52  PGASAEIVAETVVAPIEQQINGVEHMLYLASNSTADGRFSISVTFDIGTNLDIAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  +VT       +++            +  S     +  D +   
Sbjct: 112 RVAIAQPRLPSEVQQVGVVTAKSSPDLMLVVSLYSPDGSRDPLFISNFANIEIKDVLSRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP RL QL  TT  +       N      +     + +  
Sbjct: 172 DGVGSITVFGSREYAMQIWLDPDRLSQLNLTTTDVVAALKAQNVQVASGVLNAPPVPEQR 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V     +S                +   DI   +             +       
Sbjct: 232 AFQIAVRTLGRLS--------------DARAFSDIVIKQTDQALVRLKDVGRVEIAAQDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L   +  Q     +   +   T        A +           +          
Sbjct: 278 ASTSFLDKDISIQLGVFQRPGSNALATGNAVVAEMARIGKTFPEGLKYGIYYNPTQFIQQ 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+ + +   +  ++   +I +++I T  ++ L G +L   S+
Sbjct: 338 SVDAVVHTIGEAIVLVVLVVILFLQTWRAAIIPILAIPISLIGTFFVMGLFGFSLNNLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E +        S   +          A   I     +  + T
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERNIEAGLSPRDAAYKTMDEVGGALVAISLVLSSVFVPT 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFL 533
             +    G   R FA+T+  S LIS+  ++++  AM    +  ++               
Sbjct: 458 AFITGLSGEFYRQFALTIAGSTLISLLVSLTLSPAMCALLLKPHRAAHEKPAWYARPVVG 517

Query: 534 IPDCIAIQFMR 544
                   F  
Sbjct: 518 FFGVFNRAFEG 528



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 68/211 (32%), Gaps = 13/211 (6%)

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
                   + +++   V                ++     I    +  + + + +  +++ 
Sbjct: 842  SQGQAIQIMQELAAKVLPQGFSYEWTALAYQQQKAGNTAIFAFALGVLFVFLVLAAQYES 901

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
                L  I  + + +   L    L G + N+      + LIG +  + +++ +  +   +
Sbjct: 902  LTLPLAVILIVPMCLVAALIGVILRGQDNNILTQVGFIVLIGLAAKNAILIVEFAK---Q 958

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
            L       R+   ++    L   V TS+A  + V+P+      G  +  +    +  G++
Sbjct: 959  LEDQGHGRREAAVEASRLRLRPIVMTSLAFILGVVPLVWATGAGAELRQALGTAVFSGMI 1018

Query: 807  VAASSSIFIAAPILLF------IYDWRAKNA 831
                  +       +F      +   R   A
Sbjct: 1019 GVTLFGLIFTPTFYVFARWLAGLGARRETKA 1049


>gi|238799085|ref|ZP_04642542.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           mollaretii ATCC 43969]
 gi|238717065|gb|EEQ08924.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           mollaretii ATCC 43969]
          Length = 1041

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 67/684 (9%), Positives = 184/684 (26%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITIVGWVS-----LHVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +       L + +           +     + +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAVASPLEAQVNGVSNMLYMESTSANNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       +    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPKQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P R+  L  +   +       N        G       
Sbjct: 169 INGVGDVQVFGARDYSMRVWLNPQRMESLNVSVQDIVAALQQQNVQAAAGQIGSSPSMPD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  ++                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLT-------------DPQQFANVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A   P     +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLSASFPPDLTYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL V+++ +   +   +   +I ++++ T A+L + G +    S
Sbjct: 336 ATLHEIALSLTLTLIVVLAVVYLFLQSLRATFIVALTIPVSLLGTFAVLYVFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +     N  N +   +      +    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLSNDPNLTPAEATKQAMGQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V +    G      R FA+T+  ++++S   A+++  A+   +++ + + +  +      
Sbjct: 456 VPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPALCAVLLKRRTLATTGVFGGINR 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L         +  R     +  + ++  +      G           +        + L
Sbjct: 516 GLDRARDGYVSLTGRISSRAVFSIAALLLVGFATWWGYTRLPTSFLPEEDQGYFFVSLQL 575

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK--KITEIVPLS 649
               S   +  + D  +Q           ++      ++             +       
Sbjct: 576 PDGASLNRTQTVMDQMYQQVTANDAVEDVIKITGFSLLSGNNAPNAGFAIVMLKPWGQRP 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            I             +    I+ V
Sbjct: 636 HIDRVLASIQANLAAIPSAMIMAV 659



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/208 (10%), Positives = 71/208 (34%), Gaps = 13/208 (6%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
              S      +E +  +        +         +   +++   +  ++ +    L  + 
Sbjct: 827  ASSGQAMTAMEALLAQNLPQGYSYSWSGMSWQEQQTGGQVVFIYLAALVFAY---LFLVA 883

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDR 743
                W   L  I +++  +   +   +  G   ++ A   ++ LIG +  + +++  + +
Sbjct: 884  QYESWSIPLVVILSVVFAVGGAVAGLSAMGFANDVYAQIGLVLLIGLAAKNAILIVEFSK 943

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIP 800
             R+         +  +       +     + T+++  + V+P+    G   +      I 
Sbjct: 944  ARRE-----EGATIAEAARDGAKQRFRAVMMTAISFILGVMPLVFASGAGAMSRQIIGIT 998

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  G+++A +  I     + L +   R 
Sbjct: 999  VFGGMLMATAVGILFIPALYLHVQRLRE 1026



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P                  + +  + + ++ I +L  +++             T+ +
Sbjct: 316 ASFPPDLTYEINYDSTLPVTATLHEIALSLTLTLIVVLAVVYLFLQSLRATFIVALTIPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +     +++  +   
Sbjct: 376 SLLGTFAVLYVFGYSANTLSLFAIILALTIVVDDAIVVVENV-ERLLSNDPNLTPAEATK 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++ +  G  + T++      +P+A+     G +   FA+ ++  +++++ +++ ++  +
Sbjct: 435 QAMGQIAGPIIATTLVLMAVFVPIAILPGIIGELYRQFAVTLSAAVILSSINALTLSPAL 494

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 495 CAVLLKRR 502


>gi|120556362|ref|YP_960713.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Marinobacter
           aquaeolei VT8]
 gi|120326211|gb|ABM20526.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Marinobacter aquaeolei VT8]
          Length = 1036

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 77/682 (11%), Positives = 195/682 (28%), Gaps = 35/682 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I      +     L    ++++P+ +P   +  G               
Sbjct: 8   RPIFASVISIIIT-----LGGALALLGLPVEQYPNVVPPQVVVDG---------RFPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D ++  +    ++  + +        S     + ++T+SF      +     V   +Q 
Sbjct: 54  ADVISDSVVAPLEQEINGVDDMIYMESSATDSGSFRVTVSFEIGTDPDQATINVNNRVQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L    +   L   +     + +   +        +E S   +   +D++       
Sbjct: 114 ALARLPQTVRDQGLKVESRSTSILQVITLSSPDNSMDVVEISNYALLNVLDELVRLPGIG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L Q   T A ++      N        G     +     +
Sbjct: 174 DASLFGAQDYSMRIWLRPDKLAQFELTPADVAGALRAQNAQFAAGRIGAEPAPEGQAFTF 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     ++                +    I   +             I           
Sbjct: 234 SVSAPGRLT-------------SPEEFGEVILRSDDQGASLRLKDVARIELGAQNYDFAA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +             +   +     E        +           V          S   
Sbjct: 281 IYNGGATVPMGVYLQPGANALDAAEAVNEAMKEIANRFPEGLEYNVPYDTTRFIDISIQE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++V F+ + +    L+   +I ++++ T A +  +G ++ L ++ G++
Sbjct: 341 VISTFIVAVLLVVVVTFLFLQHFNATLIPLIAIPVSLVGTFAGMQAMGFSVNLLTLFGLI 400

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD+ I++ E        +  S + +     S+    +  S +  +     + F 
Sbjct: 401 LAIGVVVDNAIIIMENAERLIKEEGMSPYNAAVTTVSQVSGAVVASTLVLVAVFAPVAFL 460

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
           GG +    R FAIT+ +S++IS   A+++  AM   +     K++            +  
Sbjct: 461 GGLSGELYRQFAITIAVSVVISGVVALTLTPAMCALLLGHEGKQLTVFRWFDAGFDKVTN 520

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              A+     R   +G+ +  ++    +   + +  G+  +      + A      S + 
Sbjct: 521 GFSAVVDWLLRHAVIGVLLFAAMIGGTVFLLNKMPSGLVPQEDQGFVLTAYSLPATSSLS 580

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               +              K+ +    +    S  +T         + +           
Sbjct: 581 RTEATRDELAQKMLQLPEVKDVVAFAGFDIISSALRTNSGVAFVT-LEDWAEREGEGQGA 639

Query: 656 IVGPKISRELIRKGIVGVIISA 677
                    +        +I+ 
Sbjct: 640 ADIANKIMGIGFGMPEAFVIAF 661



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 69/184 (37%), Gaps = 10/184 (5%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                    ++    G +   +  + + + +  ++ +W   +   T +   +        L
Sbjct: 854  WTGEAYQLQDSADSGTLAFGMGLLLVFLILAAQYERWGLPVAVATAVPFGVFGAALASLL 913

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   ++     +L LIG +  + +++ +   +N +   T +S  +    +  +     +
Sbjct: 914  RGFPNDIYFQVGLLVLIGLAAKNAILIVEFAAQNRQ---TGMSSFEAASTAARQRFRAIM 970

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA---PILLFIYDWR 827
             T++   +  LP+A     G          +  G++VA++ ++F       ++  + DWR
Sbjct: 971  MTALTFIVGSLPLAFSTGAGAVSRQEIGTVVVGGMLVASTLALFFVPLFYKLIEDLADWR 1030

Query: 828  AKNA 831
             K  
Sbjct: 1031 RKRK 1034



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  +  + + +  T       G   NL  +  ++  IG  V++ +++ +       +   
Sbjct: 367 LIPLIAIPVSLVGTFAGMQAMGFSVNLLTLFGLILAIGVVVDNAIIIMENA--ERLIKEE 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
            +S  +    ++++  G  V +++       P+A  G   G +   FAI +A  +V++  
Sbjct: 425 GMSPYNAAVTTVSQVSGAVVASTLVLVAVFAPVAFLGGLSGELYRQFAITIAVSVVISGV 484

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ +   +   +     K 
Sbjct: 485 VALTLTPAMCALLLGHEGKQ 504


>gi|115351574|ref|YP_773413.1| multidrug efflux protein [Burkholderia ambifaria AMMD]
 gi|115281562|gb|ABI87079.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria AMMD]
          Length = 1045

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 71/615 (11%), Positives = 167/615 (27%), Gaps = 41/615 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G             + ++P   P              +       
Sbjct: 8   RPVFAWVIALFIMLGGAFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSATSSAGAASLYLTFKQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      +   ++     D     A++         +  +   +   +
Sbjct: 114 EARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMSAVQLGEYASANVVQALRRVDGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKLAGHGLTASDIASAVRAHNARVTVGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +             I            
Sbjct: 233 VFADAPL-------------KTPADFGAIALRAQPDGSALHLRDVARIEFGGNDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L A   P     +          S +  
Sbjct: 280 VNGKVATGMGIKLAPGSNAVSTEKRVRATMDELSAYFPPGVKYQIPYETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+    + + +  T  ++   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  + + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEGLAPYDATVKAMRQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+++ +SI  S F A+S+  A+   +          +       +     
Sbjct: 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVSGDHHEKRGFFGWFNGFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   W V    L +  ++ L          + +G   + V+  +  
Sbjct: 520 STQRYATRVGAMLKKPLRWLVVYGALTAAAALMLTQLPSAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIG 604
            L+    ++  ++  
Sbjct: 580 PLAETMQSVREVESY 594



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 72/202 (35%), Gaps = 8/202 (3%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                   ++ +       V       T         +++   I   ++  + M +++  
Sbjct: 301 TEKRVRATMDELSAYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ- 359

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                  L     + + +  T G     G   N+  +  ++  IG  V+D +VV + +  
Sbjct: 360 --NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENV-- 415

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    ++  D   K++ +  G  V  ++      +PMA +GG+V      FA+ +A 
Sbjct: 416 ERLMVEEGLAPYDATVKAMRQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAV 475

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            I  +A  ++ +   +   +  
Sbjct: 476 SIGFSAFLALSLTPALCATLLK 497



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 71/210 (33%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           I  +              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAPGHSSGEAMAAIERLAAKLPAGIGHAWSGQSFEERLSGAQAPMLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W      +  + L +   +    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ +  +    L    +S  D   ++    L   V TS+A  + VLP+A   G+  G+  
Sbjct: 938  LIVEVAKD---LVAQRMSLVDAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQM 994

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +  G++ A   ++F+     + +  
Sbjct: 995  AIGTGVLGGMITATVLAVFLVPLFFVIVGR 1024


>gi|327399573|ref|YP_004340442.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Hippea
           maritima DSM 10411]
 gi|327182202|gb|AEA34383.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Hippea
           maritima DSM 10411]
          Length = 1031

 Score =  167 bits (423), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 66/578 (11%), Positives = 150/578 (25%), Gaps = 40/578 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   G+       + +  +  +P+  P               + ++   
Sbjct: 9   KPVFSLVISIVIILAGI-----TAIDKLPVQEYPTITPPT-------------INVQAHY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       L   +   E +   S     +    I ++F      E     V  
Sbjct: 51  PGADAETLAKTVAAPLEEAINGVENMIYMSSTSSPDGTLSIQVTFKIGTDPEIAKVDVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   SKL  + ++  +         + +        I +    +  ++   +D+I   
Sbjct: 111 RVQLALSKLPEEVRRIGVSVRERSPDLLRVFSFTSKNNIHNTTYITNYLLVNVLDEIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +     P +L     T   +       NN           L++  
Sbjct: 171 RGVGYAMIFGGKEYSMRVWLKPDKLAAYNLTPMDVINAIRSQNNQYAAGRIAQEPLKEKH 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +  K  +                ++    I                 +       
Sbjct: 231 SFTYNIITKGRL-------------KTVNEFKNIIIRANPDGSSLKLKDIARVELGANNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              +  +     +    +   L  G                   
Sbjct: 278 SVSSDYNGKKAVLMGIWLSSGANALDVSKRIDGVMNKLSKGFPKDLQYKDVYNTTKFIKA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   L + V+++ +   +   +  F+I +++I T A     G ++ L ++
Sbjct: 338 SIHEVIYTLIISILLTVAVIYIFLGTLRSTTIPVFAIPVSIIGTFAGFYAAGFSINLLTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473
            G+VL IGL VD  I+V E        ++ +   +         +    I        I 
Sbjct: 398 FGLVLAIGLVVDDAIIVIENADRILKIEDLNPKEATIKSMKEITNPLIAIVLVLDAVFIP 457

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              +  F G   + FA+T+  S+ IS   A+++   +   I+R   ++    +       
Sbjct: 458 ASFIGGFSGKMYQQFALTIATSVTISGIVALTLTPTLCALILRRGGIRETAFSKAFYKLF 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
                             +  +                
Sbjct: 518 NKATEGFTKTAKTMIKFSVVGVVIFAITIGATLILYKM 555



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/198 (18%), Positives = 75/198 (37%), Gaps = 8/198 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             V+  + K   + +    + NT         E+I   I+ ++++   + I++       
Sbjct: 309 DGVMNKLSKGFPKDLQYKDVYNTTKFIKASIHEVIYTLIISILLTVAVIYIFLGTLRSTT 368

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNM 748
             + AI    + I  T   F   G   NL  +  ++  IG  V+D ++V    DR+ K  
Sbjct: 369 IPVFAI---PVSIIGTFAGFYAAGFSINLLTLFGLVLAIGLVVDDAIIVIENADRILKIE 425

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            L     + + +  K I   L   V    A FI    +  + G +   FA+ +A  + ++
Sbjct: 426 DLNPKEATIKSM--KEITNPLIAIVLVLDAVFIPASFIGGFSGKMYQQFALTIATSVTIS 483

Query: 809 ASSSIFIAAPILLFIYDW 826
              ++ +   +   I   
Sbjct: 484 GIVALTLTPTLCALILRR 501



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/271 (16%), Positives = 91/271 (33%), Gaps = 9/271 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                       +  +      N+    +    + V +N  V + +         +G    
Sbjct: 750  YYVNDFNMYDRTFRVNIQSDENFRSSSQDLEYIYVRSNTGVLIPLSSLIKIKRVVGPDVI 809

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            Q F+   +  V  Q +PG +            K       +   +      K  +E   K
Sbjct: 810  QRFNMFTSATVIGQPRPGYTSGDAMKAISQIAKKILPNGYTIAWSGTSYQEKKLQESGNK 869

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              +  ++    +L  ++  F    A+  I          LG F +  +E ++     +L 
Sbjct: 870  VFLYTVVFVFLILAALYESFTIPIAIMIIVP-FAVFGAVLGLF-MSNLERDIYFNIGILV 927

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG SV + +++   +R  ++      S  +   ++        V TS    I+ LP+  
Sbjct: 928  LIGLSVKNAILL---VRFAIERINEGYSLTEATIEAAKIRFRPIVMTSAVFIIASLPLIF 984

Query: 789  WGGS---VIGSFAIPMAFGIVVAASS-SIFI 815
            WGG+         I +  G++V     ++FI
Sbjct: 985  WGGAGAISRKIIGITVVSGMLVQTIIGTLFI 1015


>gi|126730817|ref|ZP_01746626.1| Cation/multidrug efflux pump, RND family protein [Sagittula
           stellata E-37]
 gi|126708533|gb|EBA07590.1| Cation/multidrug efflux pump, RND family protein [Sagittula
           stellata E-37]
          Length = 1039

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 68/617 (11%), Positives = 165/617 (26%), Gaps = 47/617 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  IG+L  L        + ++P   P               + +  + 
Sbjct: 8   RPIFAWVISIIIMGIGILSVL-----TLPIAQYPQIAPP-------------SISIRANY 49

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                  +     ++       L        +        +TL+F      +    +V  
Sbjct: 50  PGASAQTVANTVTQIIEQQMTGLDGMRYVSSNSTSAGTASVTLTFETGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  +         +++             + S  +    +D++   
Sbjct: 110 KLAQATPLLPDSVQRQGVTVQKSSAGFLMVIALISPDGSLDQTDLSDYLKSNLVDEMSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DPS+L     T + +       N       FG R   D  
Sbjct: 170 EGVGAVQVFGGQ-YAMRIWLDPSKLTAYELTPSDVVAAVSAENAQISAGAFGDRPTSDGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                      +   +             +       
Sbjct: 229 MLNATITAQSLL-------------QTPEDFRQIVLRAQENGGLVLLDDVATVEIGSEGY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +    S     +   T E                    +          
Sbjct: 276 NFTPTYDGQPASGMAISLAPGANALDTSELVHARMEEFAQFFPAGIAYTIPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+ + +   +  L+   ++ + ++ T  +L+++G T+   ++
Sbjct: 336 SIEEVVRTLVEAIVLVFLVMLLFLQNLRATLIPTLAVPVVILGTFGVLAVMGYTINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +      +    +    +      V 
Sbjct: 396 LAMVLAIGLLVDDAIVVVENVERLMEEEGLSPREATRKSMGQITGALIGIAMVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      + F++T+  ++ +S+  A+++  A+   ++++                
Sbjct: 456 MAFFGGSTGVIYQQFSVTIVSAMALSVLVALTLTPALCATMLKHTPSDKRGFFGFFNRGF 515

Query: 534 IPDCIAIQF------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                           R     +   ++        + T       + +G + + + A  
Sbjct: 516 GATTRGYGKAVGGIVRRPVRMALVYLLIVGGMVALFMRTPTGFLPDEDQGIMFVMIQAPT 575

Query: 588 PVDLSVVRSNLESLQIG 604
              L      +E +Q  
Sbjct: 576 GATLERTEDVVERVQTY 592



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + I  T G  A+ G   N   + A++  IG  V+D +VV + +     
Sbjct: 362 LRATLIPTLAVPVVILGTFGVLAVMGYTINTLTMLAMVLAIGLLVDDAIVVVENV--ERL 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S R+   KS+ +  G  +  +M      +PMA +GGS       F++ +   + 
Sbjct: 420 MEEEGLSPREATRKSMGQITGALIGIAMVLSAVFVPMAFFGGSTGVIYQQFSVTIVSAMA 479

Query: 807 VAASSSIFIAAPI 819
           ++   ++ +   +
Sbjct: 480 LSVLVALTLTPAL 492



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 57/158 (36%), Gaps = 5/158 (3%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             +  +   +S  A+ + +   ++ W      +  + + +   L      G E  +     
Sbjct: 865  NQAPLLYALSLAAVFLSLAALYESWSIPFAVMLAMPIGVLGALLGAWAGGFENGVFFQVG 924

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +LT+IG +  + +++ +  R                 ++  +     + TSMA  + V+P
Sbjct: 925  LLTVIGLTGKNAILIVEFARD---RMEAGEDVLTATVEAAKQRFRPIIMTSMAFSLGVVP 981

Query: 786  MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            + +  G+  G     +  G++    SS      ++   
Sbjct: 982  LVISTGAGSGGRN-AIGAGVLGGTLSSTVFGVLLVPLF 1018


>gi|116074385|ref|ZP_01471647.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           RS9916]
 gi|116069690|gb|EAU75442.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           RS9916]
          Length = 1087

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 65/569 (11%), Positives = 157/569 (27%), Gaps = 36/569 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G++       P   +   P+  P               + +   
Sbjct: 9   KRPVLTTVCSILIVLMGVIAI-----PNLPIANLPNIAPPL-------------IQVTAS 50

Query: 62  EDD----FVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116
                       +    ++  + +        +   + Q+ I + F ++   +     V 
Sbjct: 51  YSGANSLVTEQAVTNPLEQQINGVPGASYISSTSNMEGQSIIQVYFDETTDIDIDQVNVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L        +         ++  Q +  +    A   +  +  Q    +  
Sbjct: 111 NRVSLAMPQLPDQVSDTGVSVLQSTPSILLAYQVSSTEGQFDAAYLNGLVYEQLYYPLER 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                                DP++L     T   +       N+   G + G      +
Sbjct: 171 VPGVANVNILGGTNPAYRLFVDPNKLAANRLTATDVVNAVKAQNSIAVGGLVGGPPASGN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y +          L     N         + +     G     +   +        
Sbjct: 231 QAYTYPL----------LVENNGNLLSLEEFNNLIVGRTPTGNLLLLKDVGEVRYGFNNY 280

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                  +               +     +          A   P               
Sbjct: 281 TTAAVDTSNHDAISVAVFQTPDSNALDVADAVVQQMEAFAAEVPPGVTVQQVYNVGQFIE 340

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S         +   LVL++LF+ +   +  +V   +I ++++ T A + + G ++   +
Sbjct: 341 SSVEGVIDALGLAIVLVLVILFVFLQNWRATIVPSLAIPISLVGTFAFIKVFGFSINQLT 400

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL  GL VD  I+V E + +     +    +        +  +  + +  +   V 
Sbjct: 401 LLGLVLATGLVVDDAIVVIEAVSKNIESGRRPRQAALACMGELFGALVATALVLMAVFVP 460

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F+ G      + FA+T+  SI IS F A++    +   I+R +  +           +
Sbjct: 461 VAFYPGSIGIIYQQFALTIAFSIAISAFNALTFSPMLAGLILRGEASEEPRGWGWPVAGV 520

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSIC 562
           I      +F  A F     ++   +  + 
Sbjct: 521 IIGLAFGRFSAAAFGIWTYALGVVVFGLA 549



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 87/225 (38%), Gaps = 10/225 (4%)

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              + +    D   +  + +            V + V +++           T      +
Sbjct: 276 GFNNYTTAAVDTSNHDAISVAVFQTPDSNALDVADAVVQQMEAFAAEVPPGVTVQQVYNV 335

Query: 662 SREL---IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIE 717
            + +   +   I  + ++ + +L+ +++  + W   +     + + +  T  F  +FG  
Sbjct: 336 GQFIESSVEGVIDALGLAIVLVLVILFVFLQNWRATIVPSLAIPISLVGTFAFIKVFGFS 395

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            N   +  ++   G  V+D +VV + + KN++        R      + E  G  V T++
Sbjct: 396 INQLTLLGLVLATGLVVDDAIVVIEAVSKNIESGRR---PRQAALACMGELFGALVATAL 452

Query: 778 AAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819
                 +P+A + GS   +   FA+ +AF I ++A +++  +  +
Sbjct: 453 VLMAVFVPVAFYPGSIGIIYQQFALTIAFSIAISAFNALTFSPML 497



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 69/163 (42%), Gaps = 9/163 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            ++     +++Y+ +      +   +  + T+ L +   L F A+  I+ N+ A   ++TL
Sbjct: 918  LVFGLGILIVYLVLSAQYESYVTPVIILMTVPLAMLGALAFLAIRSIDLNIYAQVGLVTL 977

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG +  + +++ + + +  +     ++    +  S    L   + T++AA    LP+ V 
Sbjct: 978  IGLAAKNGILIVE-VAE--QHLEQGMAPAAAVIASAESRLRPILMTAIAALAGFLPLVVA 1034

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G     S    +  G+VVA   S+ +  P  + +     +
Sbjct: 1035 NGAGAQSQQSLGTVIFGGLVVATVLSLGVVPPFYVVVKALERR 1077


>gi|39997758|ref|NP_953709.1| outer membrane efflux protein [Geobacter sulfurreducens PCA]
 gi|39984650|gb|AAR36036.1| outer membrane efflux protein [Geobacter sulfurreducens PCA]
 gi|298506693|gb|ADI85416.1| efflux pump, RND family, inner and outer membrane proteins
           [Geobacter sulfurreducens KN400]
          Length = 1496

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 68/607 (11%), Positives = 181/607 (29%), Gaps = 46/607 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +   +  ++  ++  +G             ++ +P+                  +V    
Sbjct: 9   KRPIFATVMMLVLVTLGAFS-----YRLLSVEMYPNVEMPV-----------ISIVTKYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + V   +    +E  + +      V + R+  + + + F        +A +    +
Sbjct: 53  GASPETVEREVSKRIEEAVNQIAGVKHVVSTSRESVSTVVVEFRLEERTNEVAQEARAKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V  +L    +  ++       + +  +   I        E +  + ++   +      
Sbjct: 113 NSVRGQLPAGIEDPIIQKLDFNALPV--AALAIQSKTLSQRELTTLVDKRVRKRFESVAG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         ++  + DP RL  L      +       N +           R+    
Sbjct: 171 VGKVEMVGGAKREVNVQVDPVRLESLGLGANDVVRGLQNENVNTPLGR----ITREGAEY 226

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              ++ K ++ G +                  +   + G R         I   +     
Sbjct: 227 PLRIDGKPDLVGGYR----------------SMVVAQKGGRPITLGEVAAISDGVEERRT 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++            ++  +    ++    +   +R    P     +   +      S 
Sbjct: 271 LALVNGVPAIGIDIYKQSGANQVQVVDNVRKVMEKIRKELPPEVSLTLVRDSSIMTRQSL 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  + T  I   L +I++F+ +   +  ++   ++ ++VI +  +++ +G TL + ++  
Sbjct: 331 ADVEETLIIGGILTVIIVFLFINSWRSTVITGVTLPISVISSFIIMNAMGMTLNVMTLMA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L IGL +D  I+V E I       +    +   G S     +F + ++ L   V + F
Sbjct: 391 LSLSIGLLIDDAIVVRENIVRHLEMGKDHMEASRFGTSEIGLAVFATTLSILAVFVPVAF 450

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G     F IT+  ++L+S+F + ++   +                         +
Sbjct: 451 MRGIVGRFFFPFGITVSFAVLVSLFVSFTLDPMLSSRWHDPAVH---AHGKRRGLARWLE 507

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                F RA                 ++ T  L + +       L        D S  + 
Sbjct: 508 SFNDWFDRAADRYRLAIAWALDHRRTVIATAALTFFLGIAVMGTLESSFMSEEDTSEFQV 567

Query: 597 NLESLQI 603
           + ++   
Sbjct: 568 SFKAAPN 574



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 73/165 (44%), Gaps = 6/165 (3%)

Query: 672  GVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             ++++ + + + +  +F+ +F  L  + +L L I    G   L G   N+ A+  ++ L+
Sbjct: 863  SLLLAVVFVFLILAAQFESFFEPLAIMLSLPLSIVGMAGMLKLTGDTINIMALIGLIMLM 922

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ D  +  +      +  R+ + ++    L   V T++A    +LP+ +  
Sbjct: 923  GLVTKNAILLVDYAK--VLRRRDGLPRREAVIEAGRTRLRPIVMTTLAMIFGMLPLFLGI 980

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              GG      A  +  G++ ++  ++ +   +  ++ D   +  R
Sbjct: 981  GAGGEGRAPMARAVVGGLITSSLLTLIVVPVMYTYMDDLAVRLRR 1025



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 94/262 (35%), Gaps = 15/262 (5%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             +  +  KGG  + +     +   V      +L  G  +      +++   ++Q     
Sbjct: 240 YRSMVVAQKGGRPITLGEVAAISDGVEERRTLALVNGVPAIGIDIYKQSGANQVQVVDNV 299

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                ++ + +  +++  +   +   T      +   LI  GI+ VII  + +       
Sbjct: 300 RKVMEKIRKELPPEVSLTLVRDSSIMTRQSLADVEETLIIGGILTVIIVFLFIN------ 353

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +    TL + +  +       G+  N+  + A+   IG  ++D +VV    R+N
Sbjct: 354 -SWRSTVITGVTLPISVISSFIIMNAMGMTLNVMTLMALSLSIGLLIDDAIVV----REN 408

Query: 748 M-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAF 803
           + +         +      +E       T+++     +P+A   G V      F I ++F
Sbjct: 409 IVRHLEMGKDHMEASRFGTSEIGLAVFATTLSILAVFVPVAFMRGIVGRFFFPFGITVSF 468

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            ++V+   S  +   +    +D
Sbjct: 469 AVLVSLFVSFTLDPMLSSRWHD 490



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/483 (9%), Positives = 123/483 (25%), Gaps = 37/483 (7%)

Query: 59   EVDEDDFVNGFLQMYSDELRSFLKKEGIG------VFSMRQIQNKIT------LSFADSR 106
            +V      N  +      L++ L   G          ++              +   + +
Sbjct: 566  QVSFKAAPNASITESEGRLKAMLAAIGDIPEISHTYSTIGAGDGGTVRDGLLYVKLREKK 625

Query: 107  FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
             +E    ++   ++    ++         V         +      D +           
Sbjct: 626  ERERGQFEIERVVRQRLQQIAGITFSIEKVGNVGGAAKPLNVNLKGDDIGL----LKSYA 681

Query: 167  IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
             + +     I               +     D  +      T+  +              
Sbjct: 682  AQLKEKMYAIPGIVDVSATLEHDTPEYRLRVDREKALSAGVTSNDVVTAL---------- 731

Query: 227  MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                R +       Y  ED   +            +P   + +     D  G  +   + 
Sbjct: 732  ---SRLVGGEAVTTYEDEDGDAVDVRVRLPEVLRQNPAQVRDLKISVPDSDGGTKLIPLA 788

Query: 287  RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
              +     A   +            + +  A + G         +  + +  ++    +I
Sbjct: 789  SVSTESVAATPSEVNRRDLSR----LVTVSANLDGLPIGTAVKKVEEVSKTIAMAPGYSI 844

Query: 347  VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
                       S      +  +    V ++L          L    S+ L+++    +L 
Sbjct: 845  GFSGEAEDMAESFGYMGESLLLAVVFVFLILAAQFESFFEPLAIMLSLPLSIVGMAGMLK 904

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFD 465
            L G T+ + ++ G+++ +GL   + IL+ +  +    R       ++          I  
Sbjct: 905  LTGDTINIMALIGLIMLMGLVTKNAILLVDYAKVLRRRDGLPRREAVIEAGRTRLRPIVM 964

Query: 466  SNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            + +  +   + LF     GG      A  +   ++ S    + +V  M  ++        
Sbjct: 965  TTLAMIFGMLPLFLGIGAGGEGRAPMARAVVGGLITSSLLTLIVVPVMYTYMDDLAVRLR 1024

Query: 523  IDI 525
               
Sbjct: 1025 RWW 1027


>gi|123443783|ref|YP_001007754.1| putative integral membrane efflux protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090744|emb|CAL13621.1| putative integral membrane efflux protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 1041

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 57/523 (10%), Positives = 148/523 (28%), Gaps = 41/523 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITIVGWVS-----LHVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L + +     +         N   +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAIASPLEAQVNGVSNMLYMESTSGNNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       +    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPKQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P R+  L  +   +       N        G       
Sbjct: 169 INGVGDVQVFGARDYSMRVWLNPQRMESLNVSVQDIIAALQQQNVQAAAGQIGSSPSTPD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +S                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLS-------------DPQEFANVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A         +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLSASFPTDLTYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL V+++ +   +   +   +I ++++ T A+L + G +    S
Sbjct: 336 ATLHEIALSLTLTLIVVLAVVYLFLQNMRATFIVALTIPVSLLGTFAVLYVFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +      +       +     S+    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLSNDPDLTPAQATKQAMSQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           V +       G   R FA+T+  ++++S   A+++  A+   +
Sbjct: 456 VPIAILPGIVGELYRQFAVTLSAAVILSSINALTLSPALCAVL 498



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 71/208 (34%), Gaps = 13/208 (6%)

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
              S      +E++  +        +         +   +++   +  ++ +    L  + 
Sbjct: 827  ASSGQAMAAMEVLLAQNLPQGYSYSWSGMSWQEQQTGGQVVFIYLAALVFAY---LFLVA 883

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDR 743
                W   L  I +++  +   +   +  G   ++ A   ++ LIG +  + +++  + +
Sbjct: 884  QYESWSIPLVVILSVVFAVGGAVAGLSAMGFANDVYAQIGLVLLIGLAAKNAILIVEFSK 943

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIP 800
             R+         +          +     + T+++  + V+P+    G   +      I 
Sbjct: 944  ARRE-----EGATIAQAAQDGAKQRFRAVMMTAISFILGVMPLVFASGAGAMSRQIIGIT 998

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  G+++A +  I     + L I   R 
Sbjct: 999  VFGGMLMATAVGILFIPALYLHIQRLRE 1026



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P                  + +  + + ++ I +L  +++  +          T+ +
Sbjct: 316 ASFPTDLTYEINYDSTLPVTATLHEIALSLTLTLIVVLAVVYLFLQNMRATFIVALTIPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +      ++      
Sbjct: 376 SLLGTFAVLYVFGYSANTLSLFAIILALTIVVDDAIVVVENV-ERLLSNDPDLTPAQATK 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++++  G  + T++      +P+A+     G +   FA+ ++  +++++ +++ ++  +
Sbjct: 435 QAMSQIAGPIIATTLVLMAVFVPIAILPGIVGELYRQFAVTLSAAVILSSINALTLSPAL 494

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 495 CAVLLKCR 502


>gi|257484074|ref|ZP_05638115.1| multidrug efflux transporter [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 583

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 69/519 (13%), Positives = 147/519 (28%), Gaps = 35/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 7   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTV---------KISATYTGAS 52

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I L+FA     +    +V   LQ 
Sbjct: 53  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSANINLTFAAGTDPDVAQMQVQNKLQQ 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+       
Sbjct: 113 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIGDYISSTLLDQLSRVNGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +S      N        G            
Sbjct: 173 DVQTLGSG-YAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVTGQQLNA 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 232 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 279 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSI 338

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 339 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 398

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     + Q S   +         S  I  + + + +   + 
Sbjct: 399 MVLAIGLLVDDAIVVVENVERVMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 458

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 459 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 497



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 242 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 301

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 302 GEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 361

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 362 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 420 VMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 479

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 480 LLSVLVAMTLTPAL 493


>gi|21220016|ref|NP_625795.1| preprotein translocase subunit SecD [Streptomyces coelicolor A3(2)]
 gi|19864261|sp|Q53955|SECD_STRCO RecName: Full=Protein-export membrane protein secD
 gi|6822212|emb|CAB70918.1| protein-export membrane protein [Streptomyces coelicolor A3(2)]
          Length = 570

 Score =  167 bits (422), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 100/522 (19%), Positives = 188/522 (36%), Gaps = 46/522 (8%)

Query: 45  SLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-I 98
            LG+DL GG+ + L    +           +    + +   +   G+    ++   ++ I
Sbjct: 10  RLGIDLAGGTSITLRAVPEAGQESAINKTNMDTAVEIMNRRVNGLGVSEAEVQTQGDRNI 69

Query: 99  TLSFADSRFKENIADKVTLFLQG-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
            +        +    +V    +      L  +        T     +   S    D+   
Sbjct: 70  IVYIPKGTNSKEARQQVGTTAKLYFRPVLATELSGANATGTPSASETGGASDKATDKATD 129

Query: 158 HAIEQSMEII------------------------RQRIDQIGISESTIQRLGSHRILIQL 193
            A +++ +                          R   D +    S              
Sbjct: 130 KATDKATDGDKATDGDKASGTPSDSASASATSQGRAASDALKADPSPSATSSDGASPSPS 189

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVE 248
                     +L    A +                                Q  +     
Sbjct: 190 ASASGDDATAKLQQQYAALDCTDKNARAKAGDGAKPDEQTVACGQNSQGQWQKYILGAAA 249

Query: 249 ISGIHL-NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL-----DGRV 302
           + G  +                V + F + G+++F ++T                 D  V
Sbjct: 250 VDGTEVDEAEAVYNTQTAAGWTVTMKFTDKGSKKFADITGKLAQNQSPQNQFAIVLDNEV 309

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           ++ P ++QA+  G A+ISG+F  E A  LA ML  G+LP+         V A LG + + 
Sbjct: 310 VSDPYVSQALTGGNAEISGSFDQEEAQSLANMLSYGALPLTFKEDSVTTVTAALGGEQLK 369

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIA 418
            G  A   GL L+VL+++  Y     +A  S+ ++  LT  +++LLG T+     LP++ 
Sbjct: 370 AGLIAGAIGLALVVLYLLFYYRGLSFIAVCSLLVSAGLTYVIMALLGPTIGFALNLPAVC 429

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G ++ IG+  DS I+  ER+R+E R+ +++  +++  + RA  TI  S+  + +A  VLF
Sbjct: 430 GAIVAIGITADSFIVYFERVRDEIREGRTLRPAVERAWPRARRTILVSDFVSFLAAAVLF 489

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               G V+GFA T+GL+ L+ +       + ++  + R K  
Sbjct: 490 IVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPLLTLMARRKFF 531



 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                +  +    N  ++ + +    +    +          G    +            
Sbjct: 286 DITGKLAQNQSPQNQFAIVLDNEVVSDPYVSQALTGGNAEISGSFDQEEAQSLANMLSYG 345

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +       +   V   +  E ++ G++   I    +++Y+   ++   +  A+ +L++ 
Sbjct: 346 ALPLTFKEDSVTTVTAALGGEQLKAGLIAGAIGLALVVLYLLFYYR-GLSFIAVCSLLVS 404

Query: 704 ITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
              T    AL G       NL AV   +  IG + +  +V ++R+R  ++      + R 
Sbjct: 405 AGLTYVIMALLGPTIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIRE---GRTLRP 461

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++++        + +   +F++   + +     +  FA  +    ++          P+
Sbjct: 462 AVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPL 521

Query: 820 LLFIYDWR 827
           L  +   +
Sbjct: 522 LTLMARRK 529


>gi|150009496|ref|YP_001304239.1| multidrug resistance protein mexB [Parabacteroides distasonis ATCC
           8503]
 gi|256838228|ref|ZP_05543738.1| multidrug resistance protein mexB [Parabacteroides sp. D13]
 gi|149937920|gb|ABR44617.1| multidrug resistance protein mexB [Parabacteroides distasonis ATCC
           8503]
 gi|256739147|gb|EEU52471.1| multidrug resistance protein mexB [Parabacteroides sp. D13]
          Length = 1060

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 80/694 (11%), Positives = 187/694 (26%), Gaps = 49/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  +GL+           ++++P+  P                     
Sbjct: 8   KRPVMAISISILILVVGLISLF-----SLPVEQYPNIAPPTV---------NVSATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
           + + V   + M  +E  + ++       +        I + F      +  A  V   + 
Sbjct: 54  DANAVMNSVIMPLEESINGVENMMYITSTATNAGTATIEVFFKQGTDPDMAAVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  +  K  + T   +   + +     D         +  +    I QI   E  
Sbjct: 114 KAQGLLPAEVTKIGVSTQKRQTSFLQIDALVCDDGRYDQTFLANYLDINIIPQIKRIEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +              P R+ Q     + ++      N        G       +  Q
Sbjct: 174 GDVMMLGDAYSM-RIWLKPDRMAQYGLVPSDVTAVLGEQNLEAPTGQLGE---NSQNVFQ 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++ +  +                ++    +   +            ++          
Sbjct: 230 YTMKYRGRL-------------KDVNEFKEIVIRSQNDGSVLRLKDIADVELGTLTYGFD 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +        +    A  +     E    L   L          +    +      S  
Sbjct: 277 NKMDGKAAVTFLIFQTAGSNATAVNEQITNLLNELEQDLPKGTSFMTMMSSNDFLFASIY 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   LV++V++  +   K  L+   SI ++++ T A L   G ++ + ++  +
Sbjct: 337 NVVETLIVAIILVILVVYFFLQDFKSTLIPSISIIVSLVGTFACLVAAGFSINILTLFAL 396

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG  VD  I+V E ++ +      S + +           I       +   + + F
Sbjct: 397 VLAIGTVVDDAIVVVEAVQAKFDVGYKSPYQATKDAMGDVTMAIISCTCVFMAVFIPVTF 456

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------------ID 524
            GG +      F +TM  S+ ISM +A+++  A+   ++R                   +
Sbjct: 457 MGGTSGIFYTQFGVTMATSVGISMISALTLCPALCAIMMRPSDGNKSTKSINGRVRAAYN 516

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +  +        +           V +     +    ++ T       + +G I + + 
Sbjct: 517 ASFNAVLEKYKKGVMFFIHHRWMVWVSLIATLVLLVWMMMTTKTSLVPQEDQGAIMVNMS 576

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 L      + +     +           +       G   +   V+  +K     
Sbjct: 577 IAPGSTLEE-NKLIMAKIEKILESTPEIEHYARIAGYGLISGQGASYGSVIIRLKDWDER 635

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                T             ++    I     S I
Sbjct: 636 KGKEHTADAVIARLNAQFHQIKEAQIFSFQTSMI 669



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 81/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +              +         +  Q    ++ A    +  +  ++ + +P  T  
Sbjct: 262 DIADVELGTLTYGFDNKMDGKAAVTFLIFQTAGSNATAVNEQITNLLNELEQDLPKGTSF 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
            T +         I   +  +I++ I +++ ++     +   L    ++I+ +  T    
Sbjct: 322 MTMMSSNDFLFASIYNVVETLIVAIILVILVVYFFLQDFKSTLIPSISIIVSLVGTFACL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  + A++  IG  V+D +VV + ++    +     S       ++ +    
Sbjct: 382 VAAGFSINILTLFALVLAIGTVVDDAIVVVEAVQAKFDVGYK--SPYQATKDAMGDVTMA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  +       +P+   GG+       F + MA  + ++  S++ +   +   +  
Sbjct: 440 IISCTCVFMAVFIPVTFMGGTSGIFYTQFGVTMATSVGISMISALTLCPALCAIMMR 496



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      I ++   +  +  F  LFG+E N+     V+ LIG      +++ +     +
Sbjct: 892  SFLIPFAVIFSVPFGLMGSFLFAKLFGLENNIYLQTGVIMLIGLLAKTAILITE---YAI 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +     +   +    +    L   + T +     +LP+      G +   S    +  G+
Sbjct: 949  ERRRKGMGIIESAYSAAQVRLRPILMTVLTMIFGMLPLMFASGAGANGNSSLGTGVVGGM 1008

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
             +   + +F+     +     + K  +
Sbjct: 1009 AIGTLALLFVVPVFYIAFEFLQEKIRK 1035


>gi|172060595|ref|YP_001808247.1| multidrug efflux protein [Burkholderia ambifaria MC40-6]
 gi|171993112|gb|ACB64031.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MC40-6]
          Length = 1045

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 71/615 (11%), Positives = 167/615 (27%), Gaps = 41/615 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G             + ++P   P              +       
Sbjct: 8   RPVFAWVIALFIMLGGAFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSATSSAGAASLYLTFKQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      +   ++     D     A++         +  +   +   +
Sbjct: 114 EARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTAVQLGEYASANVVQALRRVDGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKLAGHGLTASDIASAVRAHNARVTVGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +             I            
Sbjct: 233 VFADAPL-------------KTPADFGAIALRTQPDGSALHLRDVARIEFGGNDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L A   P     +          S +  
Sbjct: 280 VNGKVATGMGIKLAPGSNAVATEKRVRATMDKLSAYFPPGVKYQIPYETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+    + + +  T  ++   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  + + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEGLAPYDATVKAMRQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+++ +SI  S F A+S+  A+   +          +       +     
Sbjct: 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVSGDHHEKRGFFGWFNGFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   W V    L +  ++ L          + +G   + V+  +  
Sbjct: 520 STQRYATRVGAMLKKPLRWLVVYGALTAAAALMLTQLPSAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIG 604
            L+    ++  ++  
Sbjct: 580 PLAETMQSVREVESY 594



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 72/203 (35%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    ++ +       V       T         +++   I   ++  + M +++ 
Sbjct: 300 ATEKRVRATMDKLSAYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    ++  D   K++ +  G  V  ++      +PMA +GG+V      FA+ +A
Sbjct: 416 -ERLMVEEGLAPYDATVKAMRQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 71/210 (33%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           I  I              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAPGHSSGEAMAAIERIAAKLPAGIGHAWSGQSFEERLSGAQAPMLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W      +  + L +   +    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ +  +    L    +S  D   ++    L   V TS+A  + VLP+A   G+  G+  
Sbjct: 938  LIVEVAKD---LVAQRMSLVDAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQM 994

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +  G++ A   ++F+     + +  
Sbjct: 995  AIGTGVLGGMITATVLAVFLVPLFFVMVGR 1024


>gi|239908050|ref|YP_002954791.1| efflux system protein [Desulfovibrio magneticus RS-1]
 gi|239797916|dbj|BAH76905.1| efflux system protein [Desulfovibrio magneticus RS-1]
          Length = 1037

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/668 (11%), Positives = 176/668 (26%), Gaps = 39/668 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G++        +  +   P+                  + L    
Sbjct: 10  RPVMTTLVMIAILIFGVMA-----YTRLPVSDLPNVDFPTIE---------VRVSLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    ++  S +               ++TL FA +R  +  A  V   +   
Sbjct: 56  PETMAAAVANPLEKQFSTIAGLDSMTSVNTVGSTRVTLQFALNRSIDAAALDVQSAMTTA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D                VL    I   +    + +         +I +     Q
Sbjct: 116 GKDLPDDLPSPPSFRKVNPADMPVLY-LAISSDVMRPSDVNEYAENMMAQRISMVPGVAQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  + DP  +        + S      N +             +  +   
Sbjct: 175 VSVYGSKKYAVRIQLDPEAMASKGIGVDEASEAVKRGNVNLPVGTVSGPSREYTVRSSGK 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D                          +                 +   +        
Sbjct: 235 LMDAA--------------------AYRPLIVAWRNGSPVRLSEIATVSDSVEETRRLNW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            +           +   +    ++    L    ++         +      +   S +  
Sbjct: 275 FSGTPGMVLAVQRQPGANSVEVVDAVKKLLPHFQSQLPASVGLKILYDRSVSIRESVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T  +   LV++V+F+ +      ++   ++ ++V+   A++  LG +L   S+  + L
Sbjct: 335 KFTLVLTVALVIMVIFLFLRNIPATIIPSLALPMSVVGAFAVMYQLGFSLDNISLMALTL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G  VD  I++ E I       +S F +   G      TI    I+     + +FF G 
Sbjct: 395 SVGFVVDDAIVMLENIVRHMEMGKSPFAAAMEGSKEISFTIVSMTISLAAVFLPVFFMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FA+T+  +ILIS F +IS+   +   +++    +       +          
Sbjct: 455 VVGRLFHEFAVTIMTAILISGFVSISLTPMLCNLVLKPHVAQRHGRVYNAIERAFDGLRD 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                 RF     +       + LL      +G   KG +         V          
Sbjct: 515 GYDASLRFVLKHHAATMIFS-LALLGVTVWLFGAIPKGFLPSEDTGQLSVTTEAEEGVSF 573

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           ++ +      N   + +  V                   +  ++         + + V  
Sbjct: 574 AVMVERQKRLNDIAKNDPDVANFMSVVGGGGPNNTSNNGRLMLSLKPLEERQHSADEVLQ 633

Query: 660 KISRELIR 667
           ++  E  +
Sbjct: 634 RLRAEFAK 641



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + M+I++++R      +     L + +          G   +  ++ A+   +
Sbjct: 338 LVLTVALVIMVIFLFLR-NIPATIIPSLALPMSVVGAFAVMYQLGFSLDNISLMALTLSV 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +   ++      S      +   E     V  +++     LP+   G
Sbjct: 397 GFVVDDAIVMLENI---VRHMEMGKSPFAAAMEGSKEISFTIVSMTISLAAVFLPVFFMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           G V      FA+ +   I+++   SI +   +
Sbjct: 454 GVVGRLFHEFAVTIMTAILISGFVSISLTPML 485



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 86/225 (38%), Gaps = 11/225 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             ++  V + +      +   V++ ++      +P S   + +         L     + V
Sbjct: 802  GQSPAVTISFNLRPGTSLGSVVDAIEDLARRELPGSIFTSFQGEAQAFQSSLTG---LSV 858

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++    ++IYI +      +   L  ++ L       L    LFG++ N+     ++ LI
Sbjct: 859  LLGMAVLVIYIVLGILYESFIHPLTILSGLPSAGVGALATLMLFGLDLNIYGFVGIIMLI 918

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ D   +        ++ R+ I +         + T+MAA +  LP+A+  
Sbjct: 919  GIVKKNAIMMIDFALE--AQRGQGMAAREAIYEGALVRFRPIMMTTMAALMGTLPIALGI 976

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G        + +  G++V+   +++      +++  ++    R
Sbjct: 977  GAGAEARRPLGLCVVGGLMVSQLLTLYFTPVYYIYLDAFQEWLKR 1021


>gi|292491824|ref|YP_003527263.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Nitrosococcus halophilus Nc4]
 gi|291580419|gb|ADE14876.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Nitrosococcus halophilus Nc4]
          Length = 1056

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/565 (10%), Positives = 153/565 (27%), Gaps = 41/565 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+L           + +FP  +P               + +    
Sbjct: 9   RPRFAFVVSIVLTLAGVLAIF-----AIPVAQFPDIVPP-------------QVQVTASY 50

Query: 63  DDFVNGFLQMYS-DELRSFL----KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       +T++FA     +     V  
Sbjct: 51  PGANAEVVEATVAQPIEQQVVGVSDMLYMQSTSSADGGYTLTVTFALGTNPDINTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  L         + + Q        + +  S       ID +   
Sbjct: 111 RVALAEPLLPEEVSRQGLSVEKRSSGLLQVIQLYSPNGTFNQLYLSNYATINVIDTLKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +    +   +    DP +L     T  +++      N        G   L    
Sbjct: 171 PGVGDAMLFGALDYSMRIWLDPDKLTNFQLTPVEVAAAIRAQNVQAAVGRIGAAPLNPDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++                +    I                 +       
Sbjct: 231 QVQLTISTQGRLTSEQ-------------EFGNIIVRANPDGSVVRVRDVARVELGAQTF 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +     E        L          +           
Sbjct: 278 DRFSRFNGQPSAAIGIYQSPGANAIAVAERVTARMEELAQRFPDDLEYLTMYDTTVFVTS 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +V+F+ +   +  ++   ++ +++I T A+L ++G +    S+
Sbjct: 338 TIKAIIQTLLEAFVLVALVVFVFLGKLRTTIIPLVAVPVSIIGTFAVLLVIGYSANTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E +      + + SV  +         + I    +  L   V
Sbjct: 398 LALVLSIGIVVDDAIIVIENVERVMEEKPHLSVKEATRKAMDEITAPIIAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G +    R FA+ +  +++IS   A+++  A+   +++    +           
Sbjct: 458 PVAFIPGISGELFRQFAVAVSTAMVISAINALTLSPALCAMLLQAGHHRPRGPVGWMLAG 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFS 557
           +        ++  +   + I  +  
Sbjct: 518 IDKLTTGYTWVVRKLVRISIVSIVL 542



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 53/446 (11%), Positives = 134/446 (30%), Gaps = 20/446 (4%)

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            A++    A   +  + G+   I  +  SN        +   + +    S+     R    
Sbjct: 594  AIMQADPAVEHVLGVIGM-DFISNSAASNSAFFVARLKPYAEREDPDLSVAAVIERLRPQ 652

Query: 463  IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
                +    +   V    G G+  GF   +      S     ++VR + +   +   +  
Sbjct: 653  FAAISGGTAVPLNVPPIVGLGSTGGFEYALESLQGQSAADIAAVVRGLTLAANQEPALAG 712

Query: 523  IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQL 581
            +     +    I   +  +  +     +         ++   + +  N +G  ++  IQ 
Sbjct: 713  VFSTFAADTPQIYLDVNREKAQTLGVAIDDIFTALQATLGGYYVNDFNLFGRTWQVNIQA 772

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDG---------EKNFLVRLQYQPGDSVAQT 632
             V     +                      +           +    R     G      
Sbjct: 773  EVDYRSQIKDIYRIHVKNDQGEMVPIRALAEARLVLGPRALTRYNNFRGAIVNGAPAPGY 832

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY---IWIRFK 689
               E +                        +E    G  G+++    +  Y   + +   
Sbjct: 833  SSGEALVAMERLSATTLPAGYAFEWTGTAFQEKEAAGKTGIVLGLAVVFAYLFLVALYES 892

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W   +  + ++I+ +   +    L G+ F++ A   ++ LI  +  + +++ +     + 
Sbjct: 893  WNVPIPVLLSVIVGVLGAVVAVWLAGLTFDVYAQIGLVVLIALAAKNAILIVEFA---LA 949

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                  S  D   +         + TS A  + +LP+ +    G +   +   P+ FG++
Sbjct: 950  QRNAGKSLIDSAIEGARLRFRPVMMTSFAFILGLLPLVIATGPGAASRQAVGTPVFFGML 1009

Query: 807  VAASSSIFIAAPILLFIYDWRAKNAR 832
             A++  +F+   + +     R K +R
Sbjct: 1010 AASAIGVFVIPMLYVVFQWMREKTSR 1035



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 62/138 (44%), Gaps = 4/138 (2%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           K    +  +  + + I  T     + G   N  ++ A++  IG  V+D ++V + + + +
Sbjct: 363 KLRTTIIPLVAVPVSIIGTFAVLLVIGYSANTVSLLALVLSIGIVVDDAIIVIENV-ERV 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
                 +S ++   K+++E     +  ++      +P+A      G +   FA+ ++  +
Sbjct: 422 MEEKPHLSVKEATRKAMDEITAPIIAITLVLLSVFVPVAFIPGISGELFRQFAVAVSTAM 481

Query: 806 VVAASSSIFIAAPILLFI 823
           V++A +++ ++  +   +
Sbjct: 482 VISAINALTLSPALCAML 499


>gi|167841887|ref|ZP_02468571.1| Hydrophobe/amphiphile efflux-1 pump, HAE1 [Burkholderia
           thailandensis MSMB43]
          Length = 513

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 72/517 (13%), Positives = 145/517 (28%), Gaps = 33/517 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   G+L       PQ  + ++P   P   +          +       
Sbjct: 8   RPVFAWIVALAIVVAGVLAI-----PQLPVAQYPRLAPPRIV---------INATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V+G +    +E             S     N +I ++FA     +     V   L+ 
Sbjct: 54  TETVDGDVGSIIEESLDGADGLLYDETSSDGHGNLEIDVTFAPGTDPDLALVDVQNRLKQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L     +  +         ++L           + + S  + R  + ++  +    
Sbjct: 114 VEPRLPQQVVQQGIGVFKAANTFLMLVALTSTDGTRDSAQLSDYLSRYVLRELKRAPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP +LR+       +       N +      G            
Sbjct: 174 SAQLWDA-DEALRIWLDPVKLREYGLGADDVIAAVAAQNAAVTAGAIGDAPFAAGQQTSA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K +++                +    +   +             +           
Sbjct: 233 AVIVKGQLA-------------SPAEFGQIVLKSKPDGSVVRLADVARVELGRDDYSFSS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L              + +   T        A L     P     +          +   
Sbjct: 280 RLNGKTAATVGIQLGPRGNALETSNAIRARLAELSKRLPPGIAVDIPFDGAHFVRIAIDE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+++ +   +  LV    I + ++     +   G ++ + ++ G+V
Sbjct: 340 VVLTLVEAIVLVFFVMWLFLRDLRCTLVPTIVIPVTLMGAFVAMWAFGLSINVFTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      R    I           V + FF
Sbjct: 400 LAIGILVDDAIVVVESVHRVMEEERVPPREATRRAMKRIVGAIVGVTAVLTAVFVPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               GG  R F++ M  S+L+S F A+S+  A+   +
Sbjct: 460 PGGVGGIYRQFSVAMIASMLVSSFMALSLTPALCANL 496



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 90/238 (37%), Gaps = 12/238 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V            S +        +       G+++  +  +     ++++ +P 
Sbjct: 260 VRLADVARVELGRDDYSFSSRLNGKTAATVGIQLGPRGNALETSNAIRARLAELSKRLPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +    G    R  I + ++ ++ + + +   +W+  +     L     + + +   
Sbjct: 320 GIAVDIPFDGAHFVRIAIDEVVLTLVEAIVLVFFVMWLFLRDLRCTLVPTIVIPVTLMGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKS 764
                 FG+  N+  +  ++  IG  V+D +VV +   R+ +  ++       R+   ++
Sbjct: 380 FVAMWAFGLSINVFTMFGLVLAIGILVDDAIVVVESVHRVMEEERV-----PPREATRRA 434

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +   +G  V  +       +PMA + G V      F++ M   ++V++  ++ +   +
Sbjct: 435 MKRIVGAIVGVTAVLTAVFVPMAFFPGGVGGIYRQFSVAMIASMLVSSFMALSLTPAL 492


>gi|145298707|ref|YP_001141548.1| protein-export membrane protein SecF [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851479|gb|ABO89800.1| protein-export membrane protein SecF [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 301

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 149/281 (53%), Gaps = 5/281 (1%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R R+ G+ IS+L ++ SI +L  +GL+ G+DF GGI L        +   + + L +   
Sbjct: 9   RWRYIGLWISVLLTVASIAVLAINGLDLGLDFTGGILLEFRIQTLKEAHELNALLSAPLA 68

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
           G I          +L++L        A+    E+      ++     +  T IVGP++  
Sbjct: 69  GAIELNGAGIPGEWLIKLPPHELPWPAE----ELAIMLGQQLNLPVELLRTTIVGPQVGA 124

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL ++G++ V+++++A+  Y+ +RF+W  A+G + +++ D    +G  ALF IEF+L  +
Sbjct: 125 ELFQQGMLAVLVASLAISAYLAVRFEWRQAIGILISVLHDGLVAIGLLALFHIEFDLNVI 184

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A ++ +IGYS+ND +V+ DR+R  +    T +S  +  D +I  T  R++ TS     +V
Sbjct: 185 AGLMAVIGYSLNDSIVISDRLRDILSS-RTKLSIYECSDVAIKATFSRTMITSGTTLFTV 243

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             + ++GG  +  FA  +  G++V   SSI +A+ +   + 
Sbjct: 244 GALLLFGGDALFGFAFTLFTGVLVGTISSITVASTVQELLG 284


>gi|27381837|ref|NP_773366.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
 gi|27355006|dbj|BAC51991.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
          Length = 1052

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 70/658 (10%), Positives = 166/658 (25%), Gaps = 44/658 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  IG +           + ++P  +P               + +    
Sbjct: 9   RPVLSNVIALLMILIGGVALF-----NLAIAQYPDVVPPT-------------VQVTTRY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +   E +         +    +T++F            V  
Sbjct: 51  PGASAKTVIDTVALPIEQQVNGVEDMLYMQSYSGSDGTYTLTVTFKIGTDLNFAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L    +   +    +    ++            ++  S        D++   
Sbjct: 111 RVSSALSQLPTSVQNQGVTVQKKSTSILLFVTLTSPDSRFDSLYLSNYATINIRDELSRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L+        +       +        G        
Sbjct: 171 PGVGNVTVFGAGQYSMRVWLDPNKLQVRGLVPQDVIQAIQQQSQQVSAGQVGAPPTPPGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +     +               T +    I                 +       
Sbjct: 231 AFQYTLNVNGRL-------------DDTSQFENIIVKSGTSGDVTRVRDVGWVELGAQTY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L                      
Sbjct: 278 SQIFSLNKQPAVGIGVFQSPGANALQVEQAVEKKMAELAKRFPEGIKYDTPFDTTKFVEA 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVL+V+ + +   +  LV   ++ + +I   A ++ LG T+ + ++
Sbjct: 338 SVHEVYMTLIEAGLLVLVVMLVFLQDWRAMLVPATTVPVTIIGAFAAMAALGFTINMSTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIAT 474
             IVL IG+ VD  I+V E       +  +   +      + ++ I       I+  +  
Sbjct: 398 FAIVLAIGIVVDDAIVVVEGAAHNIEQGMNGHDAAIKAMDQLFAPIVGITLVLISVFLPA 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G     FA+ +  + L+S   A ++        +R              F  +
Sbjct: 458 SFLAGLTGRIYSQFALVIAATALLSAINAATLKPTQCALWLRPAVPPEQRNFFYRGFNNV 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG-----VLANRPV 589
            D +   + R   + V  + +    ++ L+   G        G + +      + A +  
Sbjct: 518 YDRVERGYTRLITFLVRHATVSVAVALVLIGIGGYGLSRVPTGFLPIEDQGYLIAAIQLP 577

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           D + +    + L       +   G +  +        DS A      +    + +   
Sbjct: 578 DGASLERTQKVLDRASEIIKETPGVQQVITIAGISALDSSASLANAGVAYIILKDWDA 635


>gi|328954053|ref|YP_004371387.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454377|gb|AEB10206.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfobacca acetoxidans DSM 11109]
          Length = 1057

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 65/534 (12%), Positives = 139/534 (26%), Gaps = 32/534 (5%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
             + ++P+ +P              +      +   V   +    ++  S +        
Sbjct: 30  LPISQYPNIVPPEIF---------INTTYVGADAQTVEQSVATPIEQEMSGVDNMNYMYS 80

Query: 90  -SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            +    + K+ ++F              +      +KL  D +   +         +++ 
Sbjct: 81  LNANNGELKLYVNFDVQTDPNIDQVLAQMRQAQAEAKLPADVRNYGITVKKSTAAPLMVV 140

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                Q    A   +        DQI                  +     P +L +L  T
Sbjct: 141 DLISPQGTYDATFLANYAYINLNDQITRVAGIASVTVFGAGQYAMRFWVKPDQLAKLNIT 200

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
             ++       N        G           Y +  +  +                 + 
Sbjct: 201 IPEIVDAIQKQNTVNPSGQVGAEPAPKGQEYTYAIRSQGRLEN-------------PEEF 247

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
              +                 I            L                +    ++  
Sbjct: 248 EQIVLRANPDGSLVRLKDVARIELGSQTYALEGRLNGKACAVLAIYQLPGTNAIQAVDGV 307

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             L    +    P     +      A          T      LV+IV+F+ +   +  L
Sbjct: 308 KKLMEQAKKSFPPDMDYAIALDTTQAVREGLKEIVHTLFEALVLVIIVVFIFLQGWRATL 367

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   ++ ++++ T AL  LLG ++   ++ G+VL IG+ VD  I+V E +        S 
Sbjct: 368 IPALAVPVSLVGTFALFPLLGFSINTIALMGLVLAIGIVVDDAIVVVEAVEHHIEHGLSP 427

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAIS 505
             +           +  +  +     +   F     G   + FAIT+ +S++IS F A++
Sbjct: 428 KDATIKAMEEVTGPVVATTFSLAAVFIPTIFIPGITGRLYQQFAITIAVSVIISSFNALT 487

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
           +  A+   +                           F R     V         
Sbjct: 488 LTPALSALL------LKPKKASQGPLSRFYRWFNEAFGRTTNGYVSWCGTLIRK 535



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 63/168 (37%), Gaps = 7/168 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              V   +S + + + +  +++ W      +    + I       +L G+E N+ A   ++
Sbjct: 873  AWVVFALSLLFVFLILAAQYESWSLPFSVLLGTPVAIFGAFLGISLRGMELNIYAQIGLI 932

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG +  + +++ +  +     Y     F D   +     L   + TS A  +  +P+A
Sbjct: 933  LLIGLAAKNAILIVEFAK---VEYEKGKDFADAALEGARLRLRPILMTSFAFILGCIPLA 989

Query: 788  V-WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +  G   I        +  G+  A   +IF+       +  +  +  +
Sbjct: 990  LASGSGAIARKVMGTAVIGGMTAATIIAIFLIPVTFYVVEKFSHRKGK 1037



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 9/203 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               +++E  KK     +  +   +T     +  +E++      +++  I + I++    
Sbjct: 305 DGVKKLMEQAKKSFPPDMDYAIALDTTQAVREGLKEIVHTLFEALVLVIIVVFIFLQ--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +  T   F L G   N  A+  ++  IG  V+D +VV + +    
Sbjct: 362 GWRATLIPALAVPVSLVGTFALFPLLGFSINTIALMGLVLAIGIVVDDAIVVVEAV---E 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                 +S +D   K++ E  G  V T+ +     +P     G        FAI +A  +
Sbjct: 419 HHIEHGLSPKDATIKAMEEVTGPVVATTFSLAAVFIPTIFIPGITGRLYQQFAITIAVSV 478

Query: 806 VVAASSSIFIAAPILLFIYDWRA 828
           ++++ +++ +   +   +   + 
Sbjct: 479 IISSFNALTLTPALSALLLKPKK 501


>gi|126641795|ref|YP_001084779.1| AdeB [Acinetobacter baumannii ATCC 17978]
          Length = 993

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/629 (10%), Positives = 162/629 (25%), Gaps = 26/629 (4%)

Query: 58  LEVDEDDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIA 112
           +           +       +   L            +      +IT +F      E   
Sbjct: 3   ISATYPGATAKTINDSVVTLIERELSGVKNLLYYSATTDTSGTAEITATFKPGTDVEMAQ 62

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
             V   ++ V ++L    ++  L         ++L   N        ++ S  ++R  ++
Sbjct: 63  VDVQNKIKAVEARLPQVVRQQGLQVEASSSGFLMLVGINSPNNQYSEVDLSDYLVRNVVE 122

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           ++   E   +          +    DP++L     + + ++      N        G   
Sbjct: 123 ELKRVEGVGKVQSFGA-EKAMRIWVDPNKLVSYGLSISDVNNAIRENNVEIAPGRLGDLP 181

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                     +  + ++S +              +        +            N+  
Sbjct: 182 AEKGQLITIPLSAQGQLSSLE-------------QFKNISLKSKTNGSVIKLSDVANVEI 228

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                    +        A        +   T E        L+          +     
Sbjct: 229 GSQAYNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPEGMEFSIPYDTA 288

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S      T      LV IV+++ +   ++ L+      + ++ T  ++ L G ++
Sbjct: 289 PFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIALLGTFTVMLLAGFSI 348

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            + ++ G+VL IG+ VD  I+V E +      +  +   +         S I    +   
Sbjct: 349 NVLTMFGMVLAIGIIVDDAIVVVENVERIMATEGLNPKDATSKAMKEITSPIIGITLVLA 408

Query: 472 IATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + + F  G      + F +TM +SIL S   A+ +  A+   I++            
Sbjct: 409 AVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPALCATILKPIDGHHQKKGFF 468

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL---A 585
           + F    D +  ++       +  ++   +  + +               +         
Sbjct: 469 AWFDRSFDKVTKKYELMLLKIIKHTVPMMVIFLVITGITFAGMKYWPTAFMPEEDQGWFM 528

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                 S   +      +        D             G S A   V           
Sbjct: 529 TSFQLPSDATAERTRNVVNQFENNLKDNPDVKSNTTILGWGFSGAGQNVAVAFTTLKDFK 588

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              S+                    + V+
Sbjct: 589 ERTSSASKMTSAVNTSMANSTEGETMAVL 617



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 87/239 (36%), Gaps = 14/239 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V +     Q  + +                   ++V     +    +++   +P 
Sbjct: 218 IKLSDVANVEIGSQAYNFAILENGKPATAAAIQLSPGANAVKTAEGVRAKIEELKLNLPE 277

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-----RFKWYFALGAITTLILD 703
               +         +  I K I  ++ + + + I +++     R+    A+ A   L   
Sbjct: 278 GMEFSIPYDTAPFVKISIEKVIHTLLEAMVLVFIVMYLFLHNVRYTLIPAIVAPIAL--- 334

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              T     L G   N+  +  ++  IG  V+D +VV + +     + T  ++ +D   K
Sbjct: 335 -LGTFTVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV--ERIMATEGLNPKDATSK 391

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++ E     +  ++      LPMA   GSV      F + M+  I+ +A  ++ +   +
Sbjct: 392 AMKEITSPIIGITLVLAAVFLPMAFASGSVGVIYKQFTLTMSVSILFSALLALILTPAL 450



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 83/236 (35%), Gaps = 15/236 (6%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            + + V LS V +   +      +  N     +      +      A   + +++ K   
Sbjct: 743 SSGQLVSLSEVVTPQWNKAPQQYNRYNGRPSLSIAGIPNFDTSSGEAMREMEQLIAKLPK 802

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
            I    T  + +    +     +      + +S + + + +   ++ W   L     L++
Sbjct: 803 GIGYEWTGISLQEKQSESQMAFL------LGLSMLVVFLVLAALYESWAIPLS--VMLVV 854

Query: 703 DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            +       A+   G+  ++     ++T+IG S  + +++ +  +    L    +S  + 
Sbjct: 855 PLGIFGAIIAIMSRGLMNDVFFKIGLITIIGLSAKNAILIVEFAK---MLKEEGMSLIEA 911

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              +    L   + TS+A    V+P+ +  G+        +  G+     S+  +A
Sbjct: 912 TVAAAKLRLRPILMTSLAFTCGVIPLVIASGAS-SETQHALGTGVFGGMISATILA 966


>gi|157374512|ref|YP_001473112.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sediminis HAW-EB3]
 gi|157316886|gb|ABV35984.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sediminis HAW-EB3]
          Length = 1045

 Score =  167 bits (422), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 63/535 (11%), Positives = 159/535 (29%), Gaps = 36/535 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V++   +  IG++        Q  + ++P+  P   +          ++ ++   
Sbjct: 8   RPNFAVVIALFMTIIGMIAI-----TQLPVGQYPNVAPPTVM---------VYVNMDGGS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D +   +    ++  + ++       ++       + +SF      +     V   +  
Sbjct: 54  TDVMQKSVASIIEKEVNGVEGMTYMKSNIGNDGTYSLEVSFEIGIDADRAVTLVQNRVNK 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    ++  +         ++      D     AIE S        + +       
Sbjct: 114 SISRLPDGARRYGVTVEKVSSGMLMAFSVRDDSGKMDAIELSNWTSVMLKEGLQRISGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +    DPS++  L      +    +  N        G+    +    +Y
Sbjct: 174 RVMVIGEKNYSMRIWLDPSKMSALGIAVEDVQAALLEQNQILAAGRSGIEPSAEMHSWEY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + +  +S              + +   ++                 +       +   
Sbjct: 234 TFKVESALS--------------SPEQFSEVIVRSDQYGLVKVKDIAKVELGSVQYMANT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +             +  A         +          +   
Sbjct: 280 YHNNQAASTVFMYRSPTSNAMDVGNAVKAY--LSSAALPDGMKIDIPYDGTVFVQAAIDD 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV ++  + +   +  L+   +I +++I T A++   G T+ + S+ G++
Sbjct: 338 IFSTLRDAVILVTLITLLFLQSWRVTLITAAAIPVSLITTFAVMLAAGMTINIISMFGLI 397

Query: 422 LGIGLAVDSNILVNERI--REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD+ I+V E +    E     SV  ++          I  S +  L       F
Sbjct: 398 LAIGIVVDAAIIVIENVERLLEEDLELSVKDAVLNSMKEVTGPIIASMLVLLSVFGPTLF 457

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
             G        F I +  +++IS   A+ +   M + ++R  + K I +  +   
Sbjct: 458 MPGMTGILYGQFGIAICAAVVISTIVALVLTPVMCVLLMRRGESKKIWLFRVFNK 512



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 90/263 (34%), Gaps = 6/263 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +   ++ V +++   + V       L         +   +       Y+   S A    
Sbjct: 244 PEQFSEVIVRSDQYGLVKVKDIAKVELGSVQYMANTYHNNQAASTVFMYRSPTSNAMDVG 303

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFA 693
             +     +  +P     +    G    +  I      +  + I + LI +     W   
Sbjct: 304 NAVKAYLSSAALPDGMKIDIPYDGTVFVQAAIDDIFSTLRDAVILVTLITLLFLQSWRVT 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + +  T       G+  N+ ++  ++  IG  V+  ++V + +   +     
Sbjct: 364 LITAAAIPVSLITTFAVMLAAGMTINIISMFGLILAIGIVVDAAIIVIENVE-RLLEEDL 422

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVIGS-FAIPMAFGIVVAAS 810
            +S +D +  S+ E  G  + + +       P     G   ++   F I +   +V++  
Sbjct: 423 ELSVKDAVLNSMKEVTGPIIASMLVLLSVFGPTLFMPGMTGILYGQFGIAICAAVVISTI 482

Query: 811 SSIFIAAPILLFIYDWRAKNARI 833
            ++ +  P++  +   R ++ +I
Sbjct: 483 VAL-VLTPVMCVLLMRRGESKKI 504



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/323 (10%), Positives = 92/323 (28%), Gaps = 10/323 (3%)

Query: 515  IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
                 M  ID   +    L  D +                     +  +          +
Sbjct: 717  NTPNIMLDIDREKIKMLGLRMDQVFNTIQAQFAGAYAGEFNREGRNFYVFVQAEQVNRKN 776

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
             +    L V  +    +++       +  G    Q F+  +   +     PG +      
Sbjct: 777  IEDLNYLTVRNDNGDLINISSLVTPKIVFGPQVIQQFNLMQAVNINGYPAPGYASGDAIA 836

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFA 693
                  K                            ++  +++ +   L+ +     W  A
Sbjct: 837  AVEEAAKALPEGYEIEWAGLTKQELAAGD----SAVIAFMLAILFTYLLLVAQYESWVVA 892

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  I  +   +  TL      G + N+    A++ ++G +  + +++ +  +  +     
Sbjct: 893  LCIILCVPTALLGTLFTVFAMGADINIYVQIAMVLMVGMAARNAILIVEFAK--LLREEQ 950

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAAS 810
              S  D    +        + T+M+  + ++P+    G   +   +       G++ A  
Sbjct: 951  GYSIVDAAVTATKLRFRAVMMTAMSFILGLVPLMFSDGAGYAAQQAIGWAACGGMISATF 1010

Query: 811  SSIFIAAPILLFIYDWRAKNARI 833
              + +   + + +   R K  ++
Sbjct: 1011 IGLIVVPVLYIMLQTLREKCVKV 1033


>gi|237728433|ref|ZP_04558914.1| hydrophobe/amphiphile efflux-1 family protein [Citrobacter sp.
           30_2]
 gi|226909911|gb|EEH95829.1| hydrophobe/amphiphile efflux-1 family protein [Citrobacter sp.
           30_2]
          Length = 1058

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 60/523 (11%), Positives = 145/523 (27%), Gaps = 36/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              + ++L  ++   G +        Q  L  +P   P               +      
Sbjct: 10  RPIFAIVLSVLMLIAGAIS-----YFQLPLSEYPQVTPPT-----------VQVTASYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFL 119
                +   +    ++  + ++        M      + T+SF      +    +V   +
Sbjct: 54  ANPQVIADTVASPLEQAINGVEGMMYMQSQMSTDGKMVLTVSFEQHINADIAQIQVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +L  + ++  +VT       +++            +  S        D++  +  
Sbjct: 114 SRALPRLPPEVQRIGVVTEKTSPDVLMVVHLLSPGGRYDPLYVSNYATLHVKDELARTPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               L        +    +P+++       + +       N        G +    S   
Sbjct: 174 VGDVLVWGAGEYSMRVWLEPAKVAARGLIASDVVAAIREQNIQVAAGSVGQQPDA-SAAF 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V     +S                +    +       +         I         
Sbjct: 233 QVTVNTLGRLSSEE-------------QFGEIVVKTGADGQVTRLRDVARISMGADSYSL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +L                +              L+A         +          S 
Sbjct: 280 RSLLNGEPAVGIQIIQSPGANALDVSSAVRAAMDRLQAKFPDGIEYRIAYDPTVFVRASL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV+IV+ + +   +  ++   ++ ++++ T A++ + G +L   S+ G
Sbjct: 340 QSVAVTLLEAIFLVVIVVVLFLQSWRASIIPLIAVPVSLVGTFAVMHMFGFSLNTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV--- 476
           +VL IG+ VD  I+V E +       +S   +           I           +    
Sbjct: 400 LVLSIGIVVDDAIVVVENVERHIALGESPKDAARKAMDEVTGPILAITSVLAAVFIPSAF 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           L    G   R FA+T+  S ++S   ++++  A+   +++   
Sbjct: 460 LSGLQGEFYRQFALTIAFSTILSAINSLTLSPALAAILLKPHH 502



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 53/152 (34%), Gaps = 10/152 (6%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +    + +   +    L G + N+      + LIG +  + +++ +  R   
Sbjct: 903  SWSLPFAVLLIAPMALLSAIAGVWLSGGDNNIFTQIGFVVLIGLAAKNAILIVEFAR--- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
               +        + ++    L   + TS A    V+P+ +    G  +  +  I +  G+
Sbjct: 960  AKESEGADPLAAVLEAARLRLRPILMTSFAFIAGVVPLVLASGAGAEMRHAMGIAVFAGM 1019

Query: 806  VVAASSSIFIAAPILLFIY----DWRAKNARI 833
            +      + +     + +        A++AR+
Sbjct: 1020 LGVTVFGLVLTPVFYVVVRKLALRREARHARV 1051



 Score = 45.5 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 26/127 (20%), Positives = 51/127 (40%), Gaps = 10/127 (7%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  ++  +  + + +  T     +FG   N  ++  ++  IG  V+D +VV + +    
Sbjct: 363 SWRASIIPLIAVPVSLVGTFAVMHMFGFSLNTLSLFGLVLSIGIVVDDAIVVVENV---E 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSV-YTS--MAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +      S +D   K+++E  G  +  TS   A FI    ++   G     FA+     I
Sbjct: 420 RHIALGESPKDAARKAMDEVTGPILAITSVLAAVFIPSAFLSGLQGEFYRQFALT----I 475

Query: 806 VVAASSS 812
             +   S
Sbjct: 476 AFSTILS 482


>gi|320107814|ref|YP_004183404.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Terriglobus saanensis SP1PR4]
 gi|319926335|gb|ADV83410.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Terriglobus saanensis SP1PR4]
          Length = 1078

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 85/683 (12%), Positives = 185/683 (27%), Gaps = 48/683 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +   +G +  L          +FP   P               + ++ +
Sbjct: 7   RRPIVAIVIAILTVILGTVSML-----TLPTAQFPDIAPPE-------------IQVQAN 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   L       L   +        +   +    Q++I + F      +       
Sbjct: 49  YAGADAKTLLQAVSTPLEQQITGVDNMLYMYSVNANNGQSQIFVDFDVKTNPDTDQILTQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           L +    S+L V      +         ++L   +       A   +   I +  D+I  
Sbjct: 109 LRVSQAQSQLPVQATVAGITVQKSLTSPLLLVSLSSPDNKYDAKFLTNYAIIKLQDEITR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +              Q P +L +L  T  ++       NN       G       
Sbjct: 169 VPGVARVQVFSGQYALRIWVQ-PDKLAKLGITAPEVIAALQTQNNVNPAGQIGGDPAPVG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y V  +  +                 +    +                 +      
Sbjct: 228 QQFTYTVRTEGRL-------------VTPEEFEKIVLRANADGSIVHLSDVARVELGQQF 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +     +      A L           V      A  
Sbjct: 275 YTLNGRYNKAPAGVLGVYQLPGSNAVEVSKLVNKRLAELSTSFPAGLKYDVPLDTTKAVT 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                   T      LV++V+F+ +   +  L+   ++ +++I T  +   LG ++   S
Sbjct: 335 AGIHEIILTLCEALALVVVVVFIFLQGWRATLIPLLAVPVSLIGTFIIFPALGFSINTLS 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIA 473
           + G+VL IGL VD  I+V E +     +  +   +              I        I 
Sbjct: 395 LFGLVLAIGLVVDDAIIVVEAVEHHIDEGMTPQDATYKAMEEVSGPVIGIALILAAVFIP 454

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--------KSIDI 525
           T  +    G   + FAIT+ +S+LIS F A+++  A+   +++ +          +    
Sbjct: 455 TAAIPGITGRLYQQFAITIAISVLISAFNALTLSPALASLLLKPRDKERKPGLLGRFFSW 514

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       ++   +     G+ + +L  +  + +LF   L  G           +A
Sbjct: 515 FNRIFGRTTESYVSTSSVLLHKSGLSMLVLVGVGVLAVLFGSKLPTGFIPTEDQGYAFVA 574

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +  D S ++   E+      +     G +  +    +        T             
Sbjct: 575 LQLPDASSLQRTDEAALKISDALLKTPGVRGVIQVNGFSLLTQTQSTNTAFFFVSLKDWD 634

Query: 646 VPLSTIQNTEIVGPKISRELIRK 668
           +  S  +    +   ++++L   
Sbjct: 635 LRKSKEEQFTAIQASMAKQLAGN 657



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L  +  + + +  T   F   G   N  ++  ++  IG  V+D ++V + +     
Sbjct: 362 WRATLIPLLAVPVSLIGTFIIFPALGFSINTLSLFGLVLAIGLVVDDAIIVVEAV---EH 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                ++ +D   K++ E  G  +  ++      +P A   G        FAI +A  ++
Sbjct: 419 HIDEGMTPQDATYKAMEEVSGPVIGIALILAAVFIPTAAIPGITGRLYQQFAITIAISVL 478

Query: 807 VAASSSI 813
           ++A +++
Sbjct: 479 ISAFNAL 485



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 75/223 (33%), Gaps = 17/223 (7%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            N++ +   +  ++  +     +  +      S    + LE    +               
Sbjct: 805  NIKKINGPEFIYRFNEYNATQISIVGAPGYSSGQVMKALEETFAQSMPPGMGFDYAGMSY 864

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               K S+ L     V   +S + + + +   ++ W      + +  + I        +  
Sbjct: 865  QEHKASQGLP--SWVVFGLSLLFVFLILAALYESWTLPFSVLLSTPVAILGAYLALNIRS 922

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +E ++ A   ++ LIG S  + +++ +  + N   Y +  S  +    +        V T
Sbjct: 923  LENDVFATIGLVMLIGLSAKNAILIVEFAKTN---YESGQSISEAALNAARLRFRPIVMT 979

Query: 776  SMAAFISVLPMA-----------VWGGSVIGSFAIPMAFGIVV 807
            ++A     LP+            + G  V+G  A+    GI+ 
Sbjct: 980  ALAFICGCLPLWTATGAGSVSRRILGTVVVGGMALSTVIGILF 1022


>gi|256788885|ref|ZP_05527316.1| preprotein translocase subunit SecD [Streptomyces lividans TK24]
          Length = 566

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 100/518 (19%), Positives = 186/518 (35%), Gaps = 42/518 (8%)

Query: 45  SLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-I 98
            LG+DL GG+ + L    +           +    + +   +   G+    ++   ++ I
Sbjct: 10  RLGIDLAGGTSITLRAVPEAGQESAINKTNMDTAVEIMNRRVNGLGVSEAEVQTQGDRNI 69

Query: 99  TLSFADSRFKENIADKVTLFLQG-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
            ++       +    +V    +      L  +        T     +   S    D+   
Sbjct: 70  IVNIPKGTNSKEARQQVGTTAKLYFRPVLATELSGANATGTPSASETGGASDKATDKATD 129

Query: 158 HAIEQSMEII--------------------RQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
            A +                          R   D +    S                  
Sbjct: 130 KATDGDKATDGDKASGTPSDSASASATSQGRAASDALKADPSPSATSSDGASPSPSASAS 189

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGI 252
                 +L    A +                                Q  +     + G 
Sbjct: 190 GDDATAKLQQQYAALDCTDKNARAKAGDGAKPDEQTVACGQNSQGQWQKYILGAAAVDGT 249

Query: 253 HL-NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL-----DGRVLTAP 306
            +                V + F + G+++F ++T                 D  V++ P
Sbjct: 250 EVDEAEAVYNTQTAAGWTVTMKFTDKGSKKFADITGKLAQNQSPQNQFAIVLDNEVVSDP 309

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            ++QA+  G A+ISG+F  E A  LA ML  G+LP+         V A LG + +  G  
Sbjct: 310 YVSQALTGGNAEISGSFDQEEAQSLANMLSYGALPLTFKEDSVTTVTAALGGEQLKAGLI 369

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIAGIVL 422
           A   GL L+VL+++  Y     +A  S+ ++  LT  +++LLG T+     LP++ G ++
Sbjct: 370 AGAIGLALVVLYLLFYYRGLSFIAVCSLLVSAGLTYVIMALLGPTIGFALNLPAVCGAIV 429

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+  DS I+  ER+R+E R+ +++  +++  + RA  TI  S+  + +A  VLF    
Sbjct: 430 AIGITADSFIVYFERVRDEIREGRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTV 489

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G V+GFA T+GL+ L+ +       + ++  + R K  
Sbjct: 490 GKVQGFAFTLGLTTLLDVVVVFLFTKPLLTLMARRKFF 527



 Score =  111 bits (276), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                +  +    N  ++ + +    +    +          G    +            
Sbjct: 282 DITGKLAQNQSPQNQFAIVLDNEVVSDPYVSQALTGGNAEISGSFDQEEAQSLANMLSYG 341

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +       +   V   +  E ++ G++   I    +++Y+   ++   +  A+ +L++ 
Sbjct: 342 ALPLTFKEDSVTTVTAALGGEQLKAGLIAGAIGLALVVLYLLFYYR-GLSFIAVCSLLVS 400

Query: 704 ITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
              T    AL G       NL AV   +  IG + +  +V ++R+R  ++      + R 
Sbjct: 401 AGLTYVIMALLGPTIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIRE---GRTLRP 457

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++++        + +   +F++   + +     +  FA  +    ++          P+
Sbjct: 458 AVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPL 517

Query: 820 LLFIYDWR 827
           L  +   +
Sbjct: 518 LTLMARRK 525


>gi|188591646|ref|YP_001796245.1| Multidrug efflux transporter AcrB/AcrD/AcrF family, nolG homolog
           [Cupriavidus taiwanensis]
 gi|170939041|emb|CAP64056.1| Multidrug efflux transporter AcrB/AcrD/AcrF family, nolG homolog
           [Cupriavidus taiwanensis LMG 19424]
          Length = 1072

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 64/549 (11%), Positives = 150/549 (27%), Gaps = 38/549 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN     ++      +GL         +  +D+FP       +                 
Sbjct: 9   RNPVLATMMMMAFIVVGLFS-----YQRLPVDQFPDITFPVVV---------VQTEYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E+ + +           Q  + + + F  S      A  V   +  
Sbjct: 55  APESVESDVTRKVEEIVNTISGIDEIFSHSYQGTSVVVIKFDLSVDVGQAAQDVRDKIAL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNN-IDQVISHAIEQSMEIIRQRIDQIGISEST 180
           +  +   + K+  ++     +  I     +          E +    +    ++      
Sbjct: 115 IRPQFRDEVKEPRVLRYDPSDAPIFYLSVSNAPGAGRGQRELTTIADQIVRKRLETVRGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      ++     P++L  L     ++       N                    
Sbjct: 175 GAINLVGGTRREVEIRIRPAQLEALGIGVDQVMNAIRNENQELPAGEL----------RS 224

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              E  V+I G             T      I       +        ++          
Sbjct: 225 AATETVVQIKGRV----------PTPDAFRQIIVARRAGQPVTLGEIADVRDGQEEQESL 274

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L                +   T++    +   +R          V          S  
Sbjct: 275 ALLDGKRALFLSVVKAQGQNTVDTVDGLVRMTDEVRKLVPAGVQLNVVNDTARGIRSSVK 334

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T    A L + ++F+ +   +  ++   ++ + +I T  ++ L G TL + ++  +
Sbjct: 335 EVRSTLLEGAFLTVAIVFLFLGSWRSTVITGLTLPIALIGTFGVMYLCGFTLNVITLMAL 394

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL +D  I+V E I   N   +    +   G +     +  +  + +   + + F 
Sbjct: 395 SLCVGLLIDDAIVVRENIVRHNLMGKDHRSAALDGTNEIGLAVLATTFSIVAVFLPVGFM 454

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G     F IT+  ++LISMF + ++   +           + +        +    
Sbjct: 455 GGIIGRFFHQFGITVVAAVLISMFVSFTLDPMLSSVWHDPDLHGTGNKASWYGRTVGRLL 514

Query: 538 IAIQFMRAR 546
                   R
Sbjct: 515 DWFSARMDR 523



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 58/157 (36%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + I       W   +    TL + +  T G   L G   N+  + A+   +G 
Sbjct: 341 LEGAFLTVAIVFLFLGSWRSTVITGLTLPIALIGTFGVMYLCGFTLNVITLMALSLCVGL 400

Query: 733 SVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+ +        R       NE     + T+ +     LP+   GG
Sbjct: 401 LIDDAIVV----RENIVRHNLMGKDHRSAALDGTNEIGLAVLATTFSIVAVFLPVGFMGG 456

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      F I +   ++++   S  +   +    +D
Sbjct: 457 IIGRFFHQFGITVVAAVLISMFVSFTLDPMLSSVWHD 493



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/284 (10%), Positives = 80/284 (28%), Gaps = 8/284 (2%)

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
                         +                +   ++   D S     L  +     +   
Sbjct: 750  SWRAPDDENYDVRVRLPKDARTGMADLSALMIASSHANADDSPKMVPLRQIAELVPTTGA 809

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                +  L R      +   ++        K                G          G 
Sbjct: 810  NQISRRDLNREVELTANVAGRSAGEVARDVKAALDGVNWPAGYKYRFGGSTKSMNESFGY 869

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
                ++   + IY+ +      ++  +  +T+L L +        LFG   N+ ++   +
Sbjct: 870  AVSALALAVIFIYMILASQFASFFQPIAIMTSLPLTLAGVFAALLLFGSTLNMFSIIGFI 929

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISF--RDLIDKSINETLGRSVYTSMAAFISVLP 785
             L+G    + +++ D   +                + ++    L   + T++A    ++P
Sbjct: 930  MLMGLVTKNAILLVDFANQARHGVDGREPLSREAALVEAARVRLRPILMTTLAMIFGMVP 989

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +A     G          +  GI+ ++  ++ +   I  ++ D+
Sbjct: 990  LAFSLGEGAEQRAPMGQTVIGGIITSSILTLVVVPVIYTYLDDF 1033


>gi|153833631|ref|ZP_01986298.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Vibrio harveyi HY01]
 gi|148870029|gb|EDL68984.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Vibrio harveyi HY01]
          Length = 1046

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 74/687 (10%), Positives = 193/687 (28%), Gaps = 36/687 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++   +  +G++      L    +  +P   P                +     
Sbjct: 9   RPKFALVISLAMTLMGMIA-----LNVLPISEYPQISPTVI---------SVTTMYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +   + ++        +    +  + + F      +    +V   +  
Sbjct: 55  ADVVKKTVAQPIEAKVNGVEDMIYMSSVIGNDGSYTLKVYFRVGADGDMAQVRVNNLVAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  +  +    +    + +           +I  S       ++++   E   
Sbjct: 115 ATSSLPQEVNQIGVTVKKKSSDMLGVITLRSPNQSFDSIYLSNYADLNVVERLKRIEGMS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP++L  L  + + +       N        G          QY
Sbjct: 175 DITLLGKKDYSMRVWLDPNKLATLKLSASDVITAIKTQNIQVAAGKVGGMPAPGDQQYQY 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +++ K  +                 +    +                 +           
Sbjct: 235 VLQTKGRL-------------KTAAEFEKIVIRASEKGTLIRLKDVARVEVGAQGYEADG 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +    +E                 +  +   +      S   
Sbjct: 282 RMNNAPAAVLALYQLPTANALAVMEEVKRAMKDYEKTFPDDLVYDIAYDSTEYVETSIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV +V+++ +   +  ++   +I +++I T A+++L+G T+   S+ G++
Sbjct: 342 VYETLVIAVLLVTLVVYVFLQNWRATVIPTLAIPVSIIATFAVMALMGMTINTISLFGLI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     +   +   +           +  + +  L   V +   
Sbjct: 402 LAIGIVVDDAIIVVENVERVMHEEHLAPVPATIQAMKEVTGPVLATTLILLAVFVPVALL 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSRFFL 533
            G + R    FA+T+ +S+LIS   A+++  A+   +++    + I      N       
Sbjct: 462 PGISGRMFNQFAVTICVSVLISAVNALTLTPALCALMLKSTHGQPIAPLRAFNRGFDAIT 521

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 + F+  R           I ++   F    +  +  +      V    P   ++
Sbjct: 522 RKYQGLVGFLSRRLVLSFAVYGALIGALVYGFMSVPSSFVPNEDKGVFMVEMRLPDAAAL 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            R+     +  D   Q    E    V        +      + ++K    +      +  
Sbjct: 582 QRTAPLMRKYVDELKQMDGVENVVSVAGYSVINMAAIPNSGMLIIKLDSWDERKDPALHQ 641

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAM 680
             ++                + +  A+
Sbjct: 642 RALMAKVNQMLNSTPDAASFVFATPAI 668



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 59/139 (42%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +     + + I  T    AL G+  N  ++  ++  IG  V+D ++V + +     
Sbjct: 364 WRATVIPTLAIPVSIIATFAVMALMGMTINTISLFGLILAIGIVVDDAIIVVENV--ERV 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
           ++   ++      +++ E  G  + T++      +P+A+  G        FA+ +   ++
Sbjct: 422 MHEEHLAPVPATIQAMKEVTGPVLATTLILLAVFVPVALLPGISGRMFNQFAVTICVSVL 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +++ +   +   +  
Sbjct: 482 ISAVNALTLTPALCALMLK 500



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 78/256 (30%), Gaps = 11/256 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   + + V L+ +           +S  N  G                    + ++ + 
Sbjct: 787  VRSNSGKMVSLATLVKVEPIFGPDTLSNYNMFGSATVNGAPAPGYSSGDVVNAIEDLAQT 846

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             +                 K          +   +S +   +++  +++ W      +  
Sbjct: 847  SLP-SGYSYEWSGMTYQELKAGNL----APIAFALSLLFTYLFLVAQYESWTIPAAVMMA 901

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + + I   +G   + G  F+L     V+ LIG S    +++ +  +  +      +S  D
Sbjct: 902  VPVAILGAMGTLVMVGQSFDLYVQIGVVILIGMSAKVAILIVEFAK--VLREEKGLSIID 959

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               ++          T+ A    V P+ +    G +   S    +  G++++      + 
Sbjct: 960  AAKEAARIRFRAVQMTAFAFIWGVFPLVIASGAGAASRHSLGFAVFGGMILSTFVGTLLT 1019

Query: 817  APILLFIYDWRAKNAR 832
                + +   R +  R
Sbjct: 1020 PVFFVMMQSLRERFKR 1035


>gi|57234927|ref|YP_181079.1| preprotein translocase subunit SecF [Dehalococcoides ethenogenes
           195]
 gi|57225375|gb|AAW40432.1| protein-export membrane protein SecF [Dehalococcoides ethenogenes
           195]
          Length = 301

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 72/290 (24%), Positives = 135/290 (46%), Gaps = 17/290 (5%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R   + IS L  +  +  L   GL  GIDF  G  L +  ++ V +  +   L SL   
Sbjct: 7   HRPLFIFISALIILAGLASLLIFGLKPGIDFSSGSILTIKFDQTVSVDELTQELRSLGQS 66

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           +   Q             +    S         ++  + E     T +  E V P I+++
Sbjct: 67  EAIVQVTGDGD-------FLIRTSELDISQKVTLETALEEAFGNLTERGFENVDPLIAKQ 119

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGFFAL----FG 715
             +  ++ +  + + +L+Y+   F+     +++   A+  L  D    LG FAL    FG
Sbjct: 120 TTQMALIAIGAALVGILLYVTWAFRRMPKPFHYGTCAVIALFHDALVVLGIFALLAGIFG 179

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            E NL  V  ++ +IGYS+N+ VVV+DR+R+N        SF  ++++SI ET+ RS+ +
Sbjct: 180 WEINLMFVIGIMAVIGYSINNTVVVFDRIRENQLKGIH-PSFDVVVNQSIMETIVRSINS 238

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           S    I+V+ + ++ G+ I + ++ +  G++     S+F+A  +L+   +
Sbjct: 239 SFTVIITVVALMLFLGASIQNLSVVLLIGLIAGTYDSLFVAPSLLVTWEN 288


>gi|32473219|ref|NP_866213.1| protein-export membrane protein secD [Rhodopirellula baltica SH 1]
 gi|32397898|emb|CAD73899.1| protein-export membrane protein secD [Rhodopirellula baltica SH 1]
          Length = 1112

 Score =  167 bits (422), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 121/239 (50%), Gaps = 16/239 (6%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                     + L   +++    +     ++++ +   ++       ++  VG +++ ++I
Sbjct: 873  EDIEAWSPGSTLAFPKWRVQLPLGGDNAIKVMAEMEKQLDSDPVWISSSAVGARVAGDMI 932

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE-------- 717
             +    +  S + ++ YIW RF +  +   A+  L+ D+  TLG  A+            
Sbjct: 933  SRAFGALFASLLCIIGYIWFRFQRVIYGFAAVVALLHDVAITLGAIAISYWVADALGFLL 992

Query: 718  -----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                  +LT VAA+LT+IGYS+ND +VV+DR+R+            ++I+ SIN+TL R+
Sbjct: 993  IDPFKISLTVVAALLTIIGYSLNDTIVVFDRIRETKGKAPRLTG--EMINTSINQTLSRT 1050

Query: 773  VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + TS+   I V+ +  +GG  I +FA  +  G++V   SS+F+A+P+LL++ +   K A
Sbjct: 1051 LLTSLTTLIVVVLLYAFGGEGIHAFAFALVIGVIVGTYSSVFVASPVLLWLVERAEKKA 1109



 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 90/256 (35%), Gaps = 4/256 (1%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           + +   G  +   L             L  +   ++       E                
Sbjct: 333 FTLTDMGSGRFRALTTNNAPDGSRTRQLGIVLDDELLSAPSIQEPMNKNGRITGNFTRDQ 392

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
              +++++K                 VG  +  +   KG+  + IS   +L++I + +++
Sbjct: 393 VDSLVQILKAGQLPATVTKQPIAENEVGATLGADTRTKGLYSIAISLGLVLVFILVYYRF 452

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              + A   LI+++   L           L  +A ++  +G SV+  V++++R+R+ +  
Sbjct: 453 -AGVVACIALIMNMAMILATMVFINQPLTLPGLAGLVLTVGMSVDANVLIFERIREEL-- 509

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
            +     R  I           +  ++   I+ + +   G   I  FA+ +  GI+ +  
Sbjct: 510 -SKGAKARMAIRNGFARATTTIIDANLTTLITAIVLYAIGTDQIRGFAVTLILGILYSMF 568

Query: 811 SSIFIAAPILLFIYDW 826
           ++I+++  I       
Sbjct: 569 TAIYVSRTIFDLAERR 584



 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 139/615 (22%), Positives = 235/615 (38%), Gaps = 27/615 (4%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDD---FVNG-----FLQMYSDELRSFLKKEGIGVFS 90
           +     SLG+DL GG+ LV E+D +     +         +     L   +   G     
Sbjct: 99  LANKLPSLGIDLSGGTILVYELDPEKQAAVIESGGQRITSEDLVGPLTRRINPAGTQEIV 158

Query: 91  MRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
           +R    +   I +   D    E I   V    Q   + L        L+    ++     
Sbjct: 159 IRPYGEQQIEIIIPEKDPDAVERIKGLVEEAGQLRFAILANQFDHQTLINEAIEQAESTQ 218

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
                  ++    +    I  +   +   ++          I   L             G
Sbjct: 219 PGVATKDMVGSPEDSLYGIWARIGFEEKETDG---------IRPMLVPISGALARNPRTG 269

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
               +     + + +     +      D+     ++  K++I G  L  A + FD K   
Sbjct: 270 AILNVPAEARVGDETVSVARWLQTQDFDNIEVLMVINPKLDILGEDLAYAASTFDEKGAP 329

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLD---GRVLTAPVINQAIPSGKAQISGNFT 324
            V     D    R     T +         L       L +    Q   +   +I+GNFT
Sbjct: 330 AVAFTLTDMGSGRFRALTTNNAPDGSRTRQLGIVLDDELLSAPSIQEPMNKNGRITGNFT 389

Query: 325 IETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            +    L  +L+AG LP  +      E  VGA LG+D+  KG  +I   L L+++F++V 
Sbjct: 390 RDQVDSLVQILKAGQLPATVTKQPIAENEVGATLGADTRTKGLYSIAISLGLVLVFILVY 449

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G+VA  ++ +N+ + LA +  +   LTLP +AG+VL +G++VD+N+L+ ERIREE 
Sbjct: 450 YRFAGVVACIALIMNMAMILATMVFINQPLTLPGLAGLVLTVGMSVDANVLIFERIREEL 509

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
            K      ++  GF+RA +TI D+N+T LI  +VL+  G   +RGFA+T+ L IL SMFT
Sbjct: 510 SKGAKARMAIRNGFARATTTIIDANLTTLITAIVLYAIGTDQIRGFAVTLILGILYSMFT 569

Query: 503 AISIVRAMMIFIIRYKKM-KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
           AI + R +     R   +   +     S            F+      + +S +  +C +
Sbjct: 570 AIYVSRTIFDLAERRGFLSLGMSDGVNSIRSAFAGGGQFNFISKGKVTLTMSAILVVCGL 629

Query: 562 CLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             LF  G +   IDF GG  +    + P     +R  +        +           + 
Sbjct: 630 AALFARGQSILDIDFAGGSSVQFRVDEPTKADEIREIMNKAVAASDNSSVQFTVNGVSME 689

Query: 621 LQYQPGDSVAQTRVL 635
              +       + V 
Sbjct: 690 GTEEGTVFKIDSSVE 704


>gi|253989246|ref|YP_003040602.1| multidrug efflux system subunit MdtC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253780696|emb|CAQ83858.1| multidrug resistance protein mdtc (multidrug transporter mdtc)
           [Photorhabdus asymbiotica]
          Length = 1028

 Score =  167 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 81/609 (13%), Positives = 173/609 (28%), Gaps = 46/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I   GLL           +   P                  +  L   
Sbjct: 9   QRPVATTLLSLAITLCGLL-----GFTLLPVSPLPQVDFPVIT---------VYASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S       ITL F  SR   + A  V   L  
Sbjct: 55  SPETMASSIATPLERALGRIAGVNEMTSSSSLGNTNITLEFDLSRDINSAARDVQAALNA 114

Query: 122 VNSKLNVDP-KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + L      +         +  I++     D    +  +       Q   +I   E  
Sbjct: 115 AQNMLPSGMHSRPRYYKANPSDAPIMILTLTSD--TYNQGQLYDLASTQLAQKIAQVEGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +       L  +  E +P+ L     +   +       N  +          R      
Sbjct: 173 SEVSVGGSSLPAVRIELNPNALFNQGVSLDTVRQAISNANVRRPQGYVDSDQQRWQIQTN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++                      +    I                NI   +  V   
Sbjct: 233 DELKTA--------------------ESYRPIIVHYKNGSPVRLQDVANIKDSVQNVRAA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +         I   +A  +   T+         LR          V +        S +
Sbjct: 273 GMSGGEPAILLIIRREAGANIIATVNRIREQLPALRESIPASIQLKVAQDRTPTIRASLA 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    I  GLV++V+F+ +  G+  L+   ++ +++I T   + L G +L   S+  +
Sbjct: 333 EVEHALVIATGLVILVVFLFLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I+V E I            +   G      T+   +I+ +   + L   
Sbjct: 393 TIATGFVVDDAIVVLENISRHLEAGIKPMQAALRGVQEVGFTVLSMSISLVAVFIPLLLM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPLSRF 531
               G   R FAIT+  +I IS+  ++++   M   +++ + +K+           L   
Sbjct: 453 DGLVGRLFREFAITLTTAIGISLLVSLTLTPMMCAHLLKSQHIKAQKKIRGFGKVMLKIQ 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +      +R+  + ++ + ++     +      +     G +   V A++ +  
Sbjct: 513 QGYGRSLTWVLNHSRWVLLILAGIIALNVWLYINIPKTFFPEQDTGRLLGFVRADQSISF 572

Query: 592 SVVRSNLES 600
             +   +++
Sbjct: 573 QSMHEKMKN 581



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 90/264 (34%), Gaps = 7/264 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                 + T+      +    I +      PV L  V +  +S+Q    +  +       
Sbjct: 223 DQQRWQIQTNDELKTAESYRPIIVHYKNGSPVRLQDVANIKDSVQNVRAAGMSGGEPAIL 282

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L+  +    + +A    +      + E +P S             R  + +    ++I+ 
Sbjct: 283 LIIRREAGANIIATVNRIREQLPALRESIPASIQLKVAQDRTPTIRASLAEVEHALVIAT 342

Query: 678 IAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +++ +++  +     L     + + +  T     L G   N  ++ A+    G+ V+D
Sbjct: 343 GLVILVVFLFLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +VV + +    +     I       + + E     +  S++     +P+ +  G V   
Sbjct: 403 AIVVLENI---SRHLEAGIKPMQAALRGVQEVGFTVLSMSISLVAVFIPLLLMDGLVGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
              FAI +   I ++   S+ +  
Sbjct: 460 FREFAITLTTAIGISLLVSLTLTP 483



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 91/214 (42%), Gaps = 6/214 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +    +  +  +++ ITE+    T++ T     +I +E ++  +  ++ + I 
Sbjct: 803  TISFNIPEGYTLSDAINAIERTITELGVPPTVRGTFAGTAQIFQETVKSQLFLILAAIIT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYLVLGILYESYIHPLTILSTLPSAGIGALLALELFNTPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     I  R+ I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  IMVDFAIEAQRNGN--ICARNAIFQASLLRFRPILMTTLAALFGALPLVLSNGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               I +  G+V++   +++    + L     R +
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLCFDRLRER 1014


>gi|240141216|ref|YP_002965696.1| RND efflux transporter, hydrophobe/amphiphile efflux-1 (HAE1)
           family [Methylobacterium extorquens AM1]
 gi|240011193|gb|ACS42419.1| RND efflux transporter, hydrophobe/amphiphile efflux-1 (HAE1)
           family [Methylobacterium extorquens AM1]
          Length = 1064

 Score =  167 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 60/548 (10%), Positives = 148/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+           +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLIFIGGLISLF-----AMPISEYPDVVPPSVV---------VRATFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIVETVATPIEEQINGVEGMLYMSSQATTDGVMTLTVTFRLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  +VT        ++                   +    D++   +   
Sbjct: 116 AEPRLPAIVRQLGIVTVKSSPDLTMVVHLVSPNGRYDMTYLRNYAVLNIKDRLARIDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   +   +       N      + G          Q 
Sbjct: 176 QVQLFGSGDYAMRIWLDPQKVAEHGLSAGDVVREIQAQNVEAAAGVIGASPAVPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +                 I    +      
Sbjct: 236 SLNAEGRLTSEE-------------QFSDIVVKTGENGEITRLRDIARIELGASDYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          S     +     +      A ++          +          S   
Sbjct: 283 LLDNKSAVAIPISQSPGSNAIQISDEVRRTMAEIKKNMPEGVDYQIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++   G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIIGTFAVMHAFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLSPRDASYQAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   ++R        +       L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAINSLTLSPALSALLLRDHHAPKDRLTRALDTLLGWFFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 RFNRAFGR 530



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSIIGTFAVMHAFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
                +S RD   +++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 425 A---GLSPRDASYQAMREVSGPII-AIALVLVAVFVPLAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAINSL 488



 Score = 44.7 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ L+G S  + +++ +  R+   L     S      ++    L   + TSMA  + V
Sbjct: 937  IGLIVLVGLSAKNAILIVEFARE---LEFAGRSPIQAAIEASRLRLRPILMTSMAFIMGV 993

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            LP+ +    G  +  +  + +  G++   +  +F+     + + 
Sbjct: 994  LPLVMATGAGAEMRSAMGVAVFSGMIGVTAFGLFLTPVFYVLLR 1037


>gi|326780476|ref|ZP_08239741.1| protein-export membrane protein SecD [Streptomyces cf. griseus
           XylebKG-1]
 gi|326660809|gb|EGE45655.1| protein-export membrane protein SecD [Streptomyces cf. griseus
           XylebKG-1]
          Length = 589

 Score =  167 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 111/575 (19%), Positives = 217/575 (37%), Gaps = 51/575 (8%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD---- 61
             +IL +M+   G +    +  P+                LG+DL GG+ + LE      
Sbjct: 21  LALILIAMVALAGGMFLSGHTTPR----------------LGIDLAGGTSITLEAQNQPG 64

Query: 62  -EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
             +      +      +   +   G+    ++   +  I ++       +   ++V    
Sbjct: 65  KPNAINQTNMDTAVGIIERRVNGLGVSEAEVQTQGSKNIIVNIPKGTNSKQAQEQVGTTA 124

Query: 120 QG-------VNSKLNV------------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
           Q        V +                   K      +  +     +  +     + A 
Sbjct: 125 QLYFRPVLTVQASGPEPTPSGSATPSGSATPKPGESAESGDKPKGEEATGSEATPSASAT 184

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
            Q   +            ++ +   S       P +   ++L++           +    
Sbjct: 185 TQGRAVTGALTKDDPTPGASDKPAPSDSPEATPPVDPATAKLQEEFAKLDCTDPKQRTDA 244

Query: 221 NSKKGFMFGVRFLRDSDGNQY--LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG 278
                    +     +    Y   +    E+SG  ++ A    + +T + +V + F   G
Sbjct: 245 GKNAKATDSIVACGSNVPGSYEKYILGPAEVSGSDVDDAKGAIEQQTGEWIVSMEFTSAG 304

Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP----SGKAQISGNFTIETAGILAAM 334
           A++F  +T     +   +     VL   V++        S  AQISG+FT ++A  L  +
Sbjct: 305 AKKFQTITGRLAQQQPPMNQFAIVLDGEVVSAPSVRTALSKNAQISGSFTQQSAEDLGNI 364

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           L  G+LP+    V    V A LGS+ +  G  A   GL L+V++++V Y     +A  S+
Sbjct: 365 LSYGALPLTFKEVSVTTVTAALGSEQLKGGLIAGAIGLALVVVYLVVYYRGLAFIALLSL 424

Query: 395 FLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
            ++ +LT  ++SLLG      L LP++ G ++ IG+  DS I+  ER+R+E R+ +++  
Sbjct: 425 LVSGVLTYTIMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIREGRTLRP 484

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +++  + RA  TI  S+  + +A  VLF    G V+GFA T+GL+ L+ +       + +
Sbjct: 485 AIERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDVVVVFFFTKPL 544

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           M  + R K               +     ++  R 
Sbjct: 545 MTLMGRTKFFSRGGPWSGLDPKRLGAQPPLRRSRR 579



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 48/125 (38%), Gaps = 7/125 (5%)

Query: 707 TLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           T    +L G       NL AV   +  IG + +  +V ++R+R  ++      + R  I+
Sbjct: 431 TYTIMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIRE---GRTLRPAIE 487

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++        + +   +F++   + +     +  FA  +    ++      F   P++  
Sbjct: 488 RAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDVVVVFFFTKPLMTL 547

Query: 823 IYDWR 827
           +   +
Sbjct: 548 MGRTK 552


>gi|316935330|ref|YP_004110312.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Rhodopseudomonas palustris DX-1]
 gi|315603044|gb|ADU45579.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris DX-1]
          Length = 1055

 Score =  167 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 80/687 (11%), Positives = 181/687 (26%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC IG +       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVIALFICLIGAISI-----PFLPVAQYPIIAPP-------------SISVSTQY 49

Query: 63  DDFVNG----FLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                      +    +E  +          +     Q +I  +F      E  +  V  
Sbjct: 50  PGASPENLYNSVTRLIEEELNGANGILNFESTSDSLGQVEIIANFEPGTDTEMASVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ + ++L     +  ++        + +   +        +     +IR  + +I   
Sbjct: 110 RIKRIEARLPRAVLQQGILVEEASSAVLQIITLSSTDGSLDEVGLGDFMIRNVLGEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +L     T   ++      N        G        
Sbjct: 170 PGVGRATLY-STERALRIWIDPDKLVGYNLTADDVTKAIEAQNAQVASGSIGAEPSPKDK 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  K ++S                +    +                 I       
Sbjct: 229 KTSTLVLVKGQLSSAD-------------EFGAIVLRANPDGSTVRLRDVARIEIGGFSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 QFNTRLNGKPTAGLSVLMSPTGNALATAGAVEAKMKELSRFFPDNIKYEIPYNITPVVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   ++ ++    + + ++ T A L L G ++ + S+
Sbjct: 336 SITKVLHTLIEAVVLVFVVMFLFLQNIRYTIIPTIVVPVALLGTCASLLLFGYSINMLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +     S+  S I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLPPKEATRKAMSQITSAIIGITLVLIAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDIN 526
           + FF G      R F++TM  +I  S   A+++  A+   +++                 
Sbjct: 456 MAFFPGSVGIIYRQFSVTMVSAIAFSALMALTLTPALCATLLKPVNKGHAHAERGVFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +   +     +I        G  + I   + ++       +  G           +  
Sbjct: 516 NRTLDNVRERYSSIVRWNLGRTGRLMVIYAVLVAVLGWAMVRMPGGFLPIDDQGFVTVDV 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    S      + ++  +      DG +N      +             +  K   E  
Sbjct: 576 QTPSDSSYNRTYDVVKQVEDYLLKRDGVENVTFLTGFSFLGQGMNAAQAFVTLKDWGERD 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
             S+         +   E+    +  +
Sbjct: 636 TKSSAAAIVDDANRKLGEIRDARVSAL 662



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + +     + + +  T     LFG   N+ ++  ++  IG  V+D +VV + +     
Sbjct: 362 IRYTIIPTIVVPVALLGTCASLLLFGYSINMLSMFGMVLAIGILVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  ++   K++++     +  ++      LPMA + GSV      F++ M   I 
Sbjct: 420 MSEEGLPPKEATRKAMSQITSAIIGITLVLIAVFLPMAFFPGSVGIIYRQFSVTMVSAIA 479

Query: 807 VAASSSIFIAAPILLFIYD 825
            +A  ++ +   +   +  
Sbjct: 480 FSALMALTLTPALCATLLK 498



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 74/183 (40%), Gaps = 6/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      +  G  +  +L   +  + + +SA+ + + +   ++ W   
Sbjct: 834  DAIAEMERLAGQLPRGFGYDWTGQSLQEKLSGSQAPIILALSALVVFLVLAALYESWTIP 893

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  + T+ L I   +   ++  +  ++     ++T+IG +  D +++ +  +   K    
Sbjct: 894  LSVLLTVPLGIAGAVIAASMRSLPNDVYFTVGLITIIGLAAKDAILIVEFAKDLRKE--- 950

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
              S RD   ++ +      + T +A    VLPM +  G+   S    +  G++    + +
Sbjct: 951  GKSLRDATMEACHLRFRPILMTGLAFCSGVLPMVIASGAGGKSQQ-ALGTGVMGGMIAVV 1009

Query: 814  FIA 816
             +A
Sbjct: 1010 ILA 1012


>gi|331674781|ref|ZP_08375540.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           TA280]
 gi|331068220|gb|EGI39616.1| acriflavine resistance protein F (Protein EnvD) [Escherichia coli
           TA280]
          Length = 966

 Score =  167 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 60/586 (10%), Positives = 158/586 (26%), Gaps = 29/586 (4%)

Query: 79  SFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVT 137
           + +        +     +  ITL+F      +    +V   LQ     L  + ++  +  
Sbjct: 2   NGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISV 61

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                  ++++    D   +   + S  +     D +                  +    
Sbjct: 62  EKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ-YAMRIWL 120

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           D   L +   T   +     + N+       G             +  +  +        
Sbjct: 121 DADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL-------- 172

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                    +                      +            +              
Sbjct: 173 -----KNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGKPAAGLGIKLAT 227

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
             +   T +      A L+         +           S      T      LV +V+
Sbjct: 228 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVM 287

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           ++ +   +  L+   ++ + ++ T A+L+  G ++   ++ G+VL IGL VD  I+V E 
Sbjct: 288 YLFLQNMRATLIPTIAVPVVLLGTFAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVEN 347

Query: 438 IREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMG 493
           +     +++     + +   S+    +    +      + + FFGG      R F+IT+ 
Sbjct: 348 VERVMMEDKLPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIV 407

Query: 494 LSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
            ++ +S+  A+ +  A+   +           +       +           + +     
Sbjct: 408 SAMALSVLVALILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKILG 467

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
               + +  +++ +   +  L         + +G     +           +  L+ +  
Sbjct: 468 STGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQVTD 527

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             +  +  + E  F V      G +         +K         +
Sbjct: 528 YYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERSGDEN 573



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  ++  +        L        +++   + ++    ++    P 
Sbjct: 192 VRLKDVARVELGGENYNVIARINGKPAAGLGIKLATGANALDTAKAIKAKLAELQPFFPQ 251

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +  +  + + + + +++  +     L     + + +  T
Sbjct: 252 GMKVLYPYDTTPFVQLSIHEVVKTLFEAIMLVFLVMYLFLQNMRATLIPTIAVPVVLLGT 311

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A FG   N   +  ++  IG  V+D +VV + +     +    +  ++  +KS+++
Sbjct: 312 FAILAAFGYSINTLTMFGMVLAIGLLVDDAIVVVENV--ERVMMEDKLPPKEATEKSMSQ 369

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +M      +PMA +GGS       F+I +   + ++   ++ +   +   + 
Sbjct: 370 IQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLL 429

Query: 825 D 825
            
Sbjct: 430 K 430



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 653 NTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
             +  G      L       ++ IS + + + +   ++ W   +  +  + L I   L  
Sbjct: 787 GYDWTGMSYQERLSGNQAPALVAISFVVVFLCLAALYESWSIPVSVMLVVPLGIVGVLLA 846

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LF  + ++  +  +LT IG S  + +++ +  +  M+         +    ++   L 
Sbjct: 847 ATLFNQKNDVYFMVGLLTTIGLSAKNAILIVEFAKDLMEKEGKG--VVEATLMAVRMRLR 904

Query: 771 RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
             + TS+A  + VLP+A+    G     +  I +  G+V A   +I
Sbjct: 905 PILMTSLAFILGVLPLAISNGAGSGAQNAVGIGVMGGMVSATLLAI 950


>gi|148253153|ref|YP_001237738.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           BTAi1]
 gi|146405326|gb|ABQ33832.1| Putative component of multidrug efflux pump, acrB/acrD/acrF family
           [Bradyrhizobium sp. BTAi1]
          Length = 1060

 Score =  167 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 60/548 (10%), Positives = 148/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L ++I   GL+           +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSTLIFLGGLIALF-----AMPISEYPDVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +Q 
Sbjct: 56  PKVIAETVATPIEEQINGVENMLYMSSQATTDGAMTLTVTFKLGTDPDKATQLVQNRVQQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  ++T        ++                   +    D++   +   
Sbjct: 116 AEPRLPNVVRQLGVITKKSSPDLTMVVHLISPNGRYDTTYLRNYAVLNVKDRLARIDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +  +   + + +       N      + G          Q 
Sbjct: 176 DVQLFGAGDYSMRVWVDPQKAAEHGLSASDIVKAIQAQNVEAAAGVVGASPSVKGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +S                +    +                 I    +      
Sbjct: 236 SVNAEGRLSNED-------------QFADIVVKTGAHGEITRLRDVARIELGASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A +           +          S   
Sbjct: 283 LLDNKQAVAIPIFQAPGSNALQISDNVRATMAEIAKTMPEGVEYHIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T A++ L G ++   S+ G+V
Sbjct: 343 VVHTLFEAIVLVVIVVILFLQTWRASIIPLLAVPVSIVGTFAVMHLFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGLSPRDATYQAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++        +       L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAVNSLTLSPALSALLLKGHHDPKDRLTRFLDRALGWFFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 GFNRTFVR 530



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  +  + + +   +    +   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAILMIVPMALLAAMAGVYISKGDNNIFTQIGLIVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S      ++    L   + TSMA  + VLP+ +    G  +  +  + +  G+
Sbjct: 960  -LEFAGRSPLRAAIEASRLRLRPILMTSMAFIMGVLPLVLSTGAGSEMRRAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      +F+     + + 
Sbjct: 1019 IGVTVFGLFLTPVFYVLLR 1037



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFAVMHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI- 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
              + +S RD   +++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 424 --ESGLSPRDATYQAMREVSGPII-AIALVLVAVFVPLAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAVNSL 488


>gi|146342990|ref|YP_001208038.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           ORS278]
 gi|146195796|emb|CAL79823.1| Putative component of multidrug efflux pump, acrB/acrD/acrF family
           [Bradyrhizobium sp. ORS278]
          Length = 1060

 Score =  167 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 60/548 (10%), Positives = 150/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L ++I   GL+           +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSTLIFLGGLIALF-----SMPISEYPDVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +Q 
Sbjct: 56  PKVIAETVATPIEEQINGVENMLYMSSQATTDGAMTLTVTFKLGTDPDKATQLVQNRVQQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  ++T        ++                   +    D++   +   
Sbjct: 116 AEPRLPNVVRQLGVITKKSSPDLTMVVHLISPNGRYDTTYLRNYAVLNVKDRLARIDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +  +   + + +       N      + G          Q 
Sbjct: 176 DVQLFGAGDYSMRVWVDPQKAAEHGLSASDIVKAIQAQNVEAAAGVVGASPSVKGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +S                +    +                 I    +      
Sbjct: 236 SVNAEGRLSNED-------------QFADIVVKTGAHGEVTRLRDVARIELGASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A ++          +          S   
Sbjct: 283 LLDNKQAVAIPIFQAPGSNALQISDNVRATMAEIKKTMPEGVEYHIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T A++ L G ++   S+ G+V
Sbjct: 343 VVHTLFEAIVLVVIVVILFLQTWRASIIPLLAVPVSIVGTFAVMHLFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGLSPRDATYQAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++        +  +    L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAVNSLTLSPALSALLLKGHHDPKDRLTRILDRSLGWFFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 GFNRAFVR 530



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/139 (12%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  +  + + +   +    +   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAILMIVPMALLAAMAGVYISKGDNNIFTQIGLIVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TSMA  + VLP+ +    G  +  +  + +  G+
Sbjct: 960  -LEFAGRTPLRAAIEASRLRLRPILMTSMAFIMGVLPLVLSTGAGSEMRRAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      +F+     + + 
Sbjct: 1019 IGVTVFGLFLTPVFYVLLR 1037



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     LFG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFAVMHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI- 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
              + +S RD   +++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 424 --ESGLSPRDATYQAMREVSGPII-AIALVLVAVFVPLAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAVNSL 488


>gi|107022696|ref|YP_621023.1| multidrug efflux protein [Burkholderia cenocepacia AU 1054]
 gi|116689645|ref|YP_835268.1| multidrug efflux protein [Burkholderia cenocepacia HI2424]
 gi|105892885|gb|ABF76050.1| Hydrophobe/amphiphile efflux-1 HAE1 [Burkholderia cenocepacia AU
           1054]
 gi|116647734|gb|ABK08375.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia HI2424]
          Length = 1046

 Score =  167 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 72/612 (11%), Positives = 168/612 (27%), Gaps = 41/612 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GL            + ++P   P              +       
Sbjct: 8   RPVFAWVIAIFIMLGGLFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSATSSAGAASLYLTFKQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +++L    +++ +      +   ++     D      ++         +  +   E   +
Sbjct: 114 DARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTDVQLGEYASANVVQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKLAGHGLTASDIASAVRAHNARVTIGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +      F      I            
Sbjct: 233 VFADAPL-------------KTPADFGAIALRAQPDGSALFLRDVARIEFGGNDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L     P     +          S +  
Sbjct: 280 VNGKVATGMGIKLAPGSNAVSTEKRVRATMDELSRYFPPGVKYQIPYETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+    + + +  T  ++   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  + + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEGLAPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+++ +SI  S F A+S+  A+   +          +       +     
Sbjct: 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVSGDHHEKRGFFGGFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   W V    L +  ++ L          + +G   + V+  +  
Sbjct: 520 ATQRYATRVGAMLKKPVRWLVVYGALTAAAALMLTQLPTAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESL 601
            L+    ++ ++
Sbjct: 580 PLAETMQSVRAV 591



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 73/202 (36%), Gaps = 8/202 (3%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                   ++ + +     V       T         +++   I   ++  + M +++  
Sbjct: 301 TEKRVRATMDELSRYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ- 359

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                  L     + + +  T G     G   N+  +  ++  IG  V+D +VV + +  
Sbjct: 360 --NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENV-- 415

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    ++  D   K++ +  G  V  ++      +PMA +GG+V      FA+ +A 
Sbjct: 416 ERLMVEEGLAPYDATVKAMKQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAV 475

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            I  +A  ++ +   +   +  
Sbjct: 476 SIGFSAFLALSLTPALCATLLK 497



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 71/210 (33%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           I  I              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAAGHSSGEAMSAIERIAAKLPAGIGYAWSGQSFEERLSGAQAPMLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W      +  + L +   +    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ +  +    L    +S  D   ++    L   V TS+A  + VLP+A   G+  G+  
Sbjct: 938  LIVEVAKD---LVAQRMSLVDAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQM 994

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +  G++ A   ++F+     + +  
Sbjct: 995  AIGTGVLGGVITATVLAVFLVPLFFVTVGR 1024


>gi|330447978|ref|ZP_08311626.1| #NAME? [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492169|dbj|GAA06123.1| #NAME? [Photobacterium leiognathi subsp. mandapamensis svers.1.1.]
          Length = 300

 Score =  167 bits (421), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 77/293 (26%), Positives = 147/293 (50%), Gaps = 6/293 (2%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           + + I     + R+    +SI   + SI  +   GLN+G+DF GG+   V  N  +  S 
Sbjct: 1   MKNWIIKNLTKLRYMTGIVSIALMVISITFICVRGLNWGLDFTGGVVSEVQMNSQITSSE 60

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +++    ++     D    +++R         A+      + K +  +     + N
Sbjct: 61  ITPLMDAGFNQEVVVIAADEPGRWVLRYAAP-----AKGVQYPEITKVLEPLHANVQVLN 115

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
           T IVGP++  EL  +G + ++++ + +L Y+  RF+W  A G++  L+ D+   +GFFA+
Sbjct: 116 TSIVGPQVGAELAEQGGLALLVTMLCILGYLSYRFEWRLAAGSLLALLHDVILAVGFFAM 175

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             +EFNLT +AA+L ++GYS+ND +V+ DR+R+ +             +++I  T  R++
Sbjct: 176 TQMEFNLTVLAAILAILGYSLNDSIVIADRIRELLIAKPN-QDIEATNNEAIIATFSRTM 234

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            TS    ++V  + + GG+ +  F+I M  GI+    SSI +   +  F+   
Sbjct: 235 VTSGTTLMTVGSLWLLGGASLQGFSIAMFIGILTGTWSSISVGTLLPEFLGLK 287


>gi|311109045|ref|YP_003981898.1| hydrophobe/amphiphile efflux-1 Hae1 family protein [Achromobacter
           xylosoxidans A8]
 gi|310763734|gb|ADP19183.1| hydrophobe/amphiphile efflux-1 Hae1 family protein [Achromobacter
           xylosoxidans A8]
          Length = 1071

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 65/516 (12%), Positives = 140/516 (27%), Gaps = 19/516 (3%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +   +    +E  + ++             N  +T++F      +     V 
Sbjct: 51  YPGANPKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTLTVNFKLGVDPDKAQQLVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  D ++  + T        ++                   I    D++  
Sbjct: 111 NRVSQALPRLPPDVQRLGVTTAKSSPTLTLVVHLISPNDRYDITYLRNYAILNVKDRLAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP ++ Q   T  ++       N      + G       
Sbjct: 171 ITGVGEVTVWGSGNYSMRVWLDPQKVAQRGLTATEVVNAIREQNVQVAAGVIGASPTLGD 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V  +  +                 +    I          +      +      
Sbjct: 231 VPLQLNVNARGRLQSEE-------------EFRDIILKTSPDGAVTYLSDVARVELDAQE 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L                +            A L     P     +E        
Sbjct: 278 YGLRSLLDNKQAVGMGIMQSPGANALDVSSQVRAAMAELEQDFPPGVEYRIEYDPTQFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+ + +   +  ++   ++ ++++ T ALL + G ++   S
Sbjct: 338 ASIEAVVTTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFALLLMFGYSINALS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +        S   +           I    +T     V 
Sbjct: 398 LFGMVLAIGIVVDDAIVVVENVERNIAAGLSPRDATYRAMREVSGPIIAIALTLCAVFVP 457

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK--SIDINPLSRF 531
           L F     G   + FA+T+ +S +IS F ++++  A+   +++    K   +       F
Sbjct: 458 LAFMTGLTGQFYKQFAMTIAISTVISAFNSLTLSPALSAILLKSHHDKPDWLTRGMNRVF 517

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
               +     F RA                  +  +
Sbjct: 518 GRFFNWFNNMFGRASESYGTGVASVIRRKAGAMGVY 553



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILAALTGVYLTGNDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S  +   ++    L   + TS+A  + V+P+ +    G  +  +  I + FG+
Sbjct: 960  -LEMNGRSPLEAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGSEMRQAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +F+     + +     K 
Sbjct: 1019 LGVTLFGLFLTPVFYVLLRTLGGKK 1043



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFALLLMFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S RD   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 425 A---GLSPRDATYRAMREVSGPIIAIALTLCAVFVPLAFMTGLTGQFYKQFAMTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAFNSLTLSPALSAILLK 500


>gi|78222873|ref|YP_384620.1| hydrophobe/amphiphile efflux-1 HAE1 [Geobacter metallireducens
           GS-15]
 gi|78194128|gb|ABB31895.1| Hydrophobe/amphiphile efflux-1 HAE1 [Geobacter metallireducens
           GS-15]
          Length = 1044

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 70/568 (12%), Positives = 158/568 (27%), Gaps = 37/568 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +   IGL+     FL +  + ++P  +P               + +    
Sbjct: 9   RPIFANVIALVTVIIGLI-----FLNRLPVAQYPQIVPPT-------------IQVTARY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +   EG    S     +    +T++F            V  
Sbjct: 51  PGASAEVVAATIGVPIEQAVNGVEGSIYMSSTSGSDGSYNLTITFDVGTDLNTSLALVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    ++L    ++  +         ++++    D      I  S   +    + +   
Sbjct: 111 LVNTSLAQLPGGAQQQGVTVKKVSPNILLVASLYADDERFEEIFLSNYAVINLQNPLARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    D  RL+    TT+ +       N        G   +  S 
Sbjct: 171 PGVGQVRVFGAGPYSMRVWLDAKRLQSFDLTTSDILTAIQRQNVQVVAGQLGAPPVPASQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V     +S           D    + +V  +      +         +       
Sbjct: 231 SFQFTVTTLGRLS-----------DVGQFEDIVVKTATGPAPQVVRLRDVARVDLSQQNF 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +    T     Q +       +     ++       +           +          
Sbjct: 280 SNYARFTGHKSAQIVVFALPDANAIDVADSVYKALDGMSKKFPDGMKYAIRYDTTKFVRE 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S    T  I A LVL V+ + +   +  LV   ++ + +I     ++ LG T+ L ++
Sbjct: 340 AISSVYDTLFIAAFLVLFVILLFLQNIRAMLVPATTVPVTIIGAFIAMAGLGFTINLMTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IG+ VD  I++ E       K  +   +           +    +  +   +  
Sbjct: 400 FALVLVIGIVVDDAIVIVESSSYYIEKGLAPKEATIKAMRELTGPVMGITLALVAVFLPA 459

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            FF    G   R FA+ +  + +IS   A+++        +R +  K  +          
Sbjct: 460 AFFPGITGQIFRQFALVIASTAVISAINALTLKPVQCALWLRPRGEKRPNWFYRGFNRAF 519

Query: 535 PDCIAIQFMRARFWGVGISILFSICSIC 562
                +             +   I +I 
Sbjct: 520 QSFTNVYIGIVARMVKRPVLFVVIFAII 547



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 59/158 (37%), Gaps = 9/158 (5%)

Query: 674  IISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I +   +L+Y+    +   W      I  + + +   L    + G + NL     ++ +I
Sbjct: 874  IYALSVILVYMVLAALYESWTSPAAIILVVPIALVGVLLALIIRGYDNNLYTQVGLVLMI 933

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-W 789
              +  + +++ +  R    L+   +S  +   ++        V TS A  + V+P+ V +
Sbjct: 934  ALASKNAILIVEFARD---LHHGGMSIAEAAIEATRRRFRPIVMTSFAFILGVVPLVVAF 990

Query: 790  GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G       +    +  G++ +   +I       + +  
Sbjct: 991  GAGSAGQRAIGSVVFGGMISSTLLAIPFVPVFYVVLER 1028



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 61/145 (42%), Gaps = 7/145 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L   TT+ + I       A  G   NL  + A++ +IG  V+D +V+ +    +  
Sbjct: 366 IRAMLVPATTVPVTIIGAFIAMAGLGFTINLMTLFALVLVIGIVVDDAIVIVES---SSY 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                ++ ++   K++ E  G  +  ++A     LP A +    G +   FA+ +A   V
Sbjct: 423 YIEKGLAPKEATIKAMRELTGPVMGITLALVAVFLPAAFFPGITGQIFRQFALVIASTAV 482

Query: 807 VAASSSIFIAA-PILLFIYDWRAKN 830
           ++A +++ +      L++     K 
Sbjct: 483 ISAINALTLKPVQCALWLRPRGEKR 507



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 67/536 (12%), Positives = 148/536 (27%), Gaps = 55/536 (10%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            +     V+++++I     L+ +   L     +     +  +RI              E  
Sbjct: 535  KRPVLFVVIFAIIVTTSFLVFINRPLGFLPTEDQGYGVLVSRIP-------------EGA 581

Query: 62   EDDFVNGFLQMYSDELRSF--------LKKEGIGVFSMRQIQNKITLSFAD------SRF 107
                        ++ L+          +    I   +     +   + + D      +  
Sbjct: 582  SQPRSEKVAVQINEILKKTSGVDFWVHIGGLSILDGANVSNMSTTFVVYKDWSERGSALN 641

Query: 108  KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            ++ I   +   L  +            +    +     ++ ++     +    + + E++
Sbjct: 642  QDRIIASINRQLAEIQEAQAFVVIPPPIRGLGQTGGFQMMVEDRGSVGLERLKDAADELM 701

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
            R      G S+  ++ L S   L       D  R +         +  + L       F+
Sbjct: 702  RS-----GNSQPNLKGLASTFSLSSPQLYLDIDRTKAEALLVPLSNVFETLQAYLGSSFV 756

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                            +    I    +             P+  +               
Sbjct: 757  NLFNKYNQVFQVYIQADSPYRIRPEDIGKLYVRNQRGEMVPLGALI-------------- 802

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
             N+ +     L  R    P             +  F+   A  L   + A  LP  ++  
Sbjct: 803  -NVRQTQGPELITRYNLYPAAAIF-----GSAAPGFSSGQALTLMERMAAEKLPEGIDFD 856

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                   +           A+   LV +VL  +             + + ++  L  L +
Sbjct: 857  WTSTSFQEKKVGKQAYFIYALSVILVYMVLAALYESWTSPAAIILVVPIALVGVLLALII 916

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             G    L +  G+VL I LA  + IL+ E  R+ +    S+  +      R +  I  ++
Sbjct: 917  RGYDNNLYTQVGLVLMIALASKNAILIVEFARDLHHGGMSIAEAAIEATRRRFRPIVMTS 976

Query: 468  ITALIATVVL---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               ++  V L   F  G    R     +   ++ S   AI  V    + + R  + 
Sbjct: 977  FAFILGVVPLVVAFGAGSAGQRAIGSVVFGGMISSTLLAIPFVPVFYVVLERMSEW 1032


>gi|37520866|ref|NP_924243.1| AcrB/AcrD/AcrF family protein [Gloeobacter violaceus PCC 7421]
 gi|35211861|dbj|BAC89238.1| AcrB/AcrD/AcrF family protein [Gloeobacter violaceus PCC 7421]
          Length = 1043

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 76/599 (12%), Positives = 168/599 (28%), Gaps = 40/599 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-- 59
           RN    + L+ ++   G+         Q  +   P                   + +   
Sbjct: 11  RNPVPTIALFLLLTAAGVAA-----FVQLPIAIDPDVQVPK-----------VSVTVTQL 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 +   +    ++  + +         ++   +   + F      +   + V   +
Sbjct: 55  GAAPPELETQVTRKIEDAVAGIGNIRHITSQIKDGSSSTEIEFLLGTNFDRAVNDVRDAV 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             + S L     + ++        +  L +  +        E S          +     
Sbjct: 115 AKIRSSLPQSIDQPVIRRVEASRDAETLVEYEVLSASRSVKELSWIADNDVTRAMLAVPG 174

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +   S  +  ++  + DP+RL+ L  T   +       N +  G    V     +   
Sbjct: 175 VARVWRSGGVTREIRVQLDPNRLQALGITALDVDAQIRSLNTNLPGGRGEVGTTEQAIRT 234

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                   ++    ++                        R     T   I    +   +
Sbjct: 235 LGSASTVEQLRTTQISL--------------------GDGRHARLDTLGRITDGESDPDN 274

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L    +        +  +     E        L               N      S 
Sbjct: 275 LAFLNRVPVVYLGAIRSSGSNLVAVEEAIDAKMRELARSLPAGVEIRKSWTNATFVRESY 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S       + A L ++V+++ +  G+   +A  +I L+VI T A++ L G TL   ++  
Sbjct: 335 SASVEALLLGASLAVVVIWLFLRDGRATFIAGLAIPLSVIPTFAVMKLAGFTLNNMTLLA 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD  I+  E I       +S F +           +  + +T +   + + F
Sbjct: 395 LALVVGILVDDAIVEIENIIRHTAMGKSPFQAALDAADEIGLAVVATTMTIVAVFLPVAF 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   + F    G S+  ++  ++ + R +   +  Y           S      D + 
Sbjct: 455 MEGIQGQYFRQ-FGWSVAAAVLFSLLVARMLTPLMAAYWMKPLPHTEQKSFLVRAYDYLL 513

Query: 540 IQFMRARFWGVGISILFSICS-ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           I+ ++ R   V ++      S                 G I L VL      +   R +
Sbjct: 514 IRALQYRNLTVVLAAGVFALSLWLWPQVPTSLVNAADDGEIDLYVLMPPGTPIEQTRQS 572



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 81/250 (32%), Gaps = 7/250 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           Q+ +   R   L  +    +     D           +L  ++    + VA    ++   
Sbjct: 248 QISLGDGRHARLDTLGRITDGESDPDNLAFLNRVPVVYLGAIRSSGSNLVAVEEAIDAKM 307

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
           +++   +P               RE     +  +++ A   ++ IW+  +       A  
Sbjct: 308 RELARSLPAGVEIRKSWTNATFVRESYSASVEALLLGASLAVVVIWLFLRDGRATFIAGL 367

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L +  T     L G   N   + A+  ++G  V+D +V  + +   ++      S  
Sbjct: 368 AIPLSVIPTFAVMKLAGFTLNNMTLLALALVVGILVDDAIVEIENI---IRHTAMGKSPF 424

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
                + +E     V T+M      LP+A      G     F   +A  ++ +   +  +
Sbjct: 425 QAALDAADEIGLAVVATTMTIVAVFLPVAFMEGIQGQYFRQFGWSVAAAVLFSLLVARML 484

Query: 816 AAPILLFIYD 825
              +  +   
Sbjct: 485 TPLMAAYWMK 494


>gi|260554420|ref|ZP_05826641.1| multidrug ABC transporter [Acinetobacter baumannii ATCC 19606]
 gi|260410962|gb|EEX04259.1| multidrug ABC transporter [Acinetobacter baumannii ATCC 19606]
          Length = 1059

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 55/503 (10%), Positives = 130/503 (25%), Gaps = 30/503 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPSNSPLQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 +    +      
Sbjct: 236 NAQGRL---------------TTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIEAGLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMT 460

Query: 482 GGAVRGFAITMGLSILISMFTAI 504
           G   + +        + ++ +A 
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAF 483



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 117/395 (29%), Gaps = 18/395 (4%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
            ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 652  AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 711

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   +  M           ++D++ +           +      + G      F+   
Sbjct: 712  AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 771

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +          L +         V  S+L ++                   
Sbjct: 772  RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 831

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 832  INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 890

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++     L  I  + + I   L    L   + N+     ++ L+G +  + ++
Sbjct: 891  FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTAGDNNIFTQIGLMVLVGLACKNAIL 950

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  R+   L     +      ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 951  IVEFARE---LEMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 1007

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              + + FG++      +F+     + I    +K+ 
Sbjct: 1008 MGVAVFFGMIGVTFFGLFLTPAFYVLIRSLNSKHK 1042



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 363 WRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                ++ R+   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 423 A---GLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479

Query: 807 VAASSS 812
           ++A +S
Sbjct: 480 ISAFNS 485


>gi|160901288|ref|YP_001566870.1| hydrophobe/amphiphile efflux-1 family protein [Delftia acidovorans
           SPH-1]
 gi|160366872|gb|ABX38485.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Delftia
           acidovorans SPH-1]
          Length = 1049

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 76/692 (10%), Positives = 181/692 (26%), Gaps = 56/692 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL       P   + +FP+  P               + +  + 
Sbjct: 8   RPNFAWVVAIFIMLAGLLAI-----PALPVSQFPNVAPP-------------QISITANY 49

Query: 63  DDFVNGF-LQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++  +  +   L            S      +IT +FA          +V  
Sbjct: 50  PGASATTVMESVTSVIEEELNGTKGLLYFDSSSGSTGLAEITATFAPGTEPALAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI--SHAIEQSMEIIRQRIDQIG 175
            ++   ++L     +  L         +++           +  +  S   +R   ++I 
Sbjct: 110 RIKKAEARLPASVMQMGLQVEQASANFLMIYSLTYKDGSGGNSEVALSDYAVRNINNEIR 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 +        + +    DP++L     + A ++      N       FG      
Sbjct: 170 RVPGVGKVQFF-AADVAMRVWVDPNKLLGYGLSMADVNAAIAAQNAQVPAGSFGASPAGP 228

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  +  K  ++                +    +                 +     
Sbjct: 229 GQELSATIAVKGTLA-------------SPEEFGQIVLRARADGSAVRLADVARLEVGQL 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                          A        +   T +      A L           V        
Sbjct: 276 DYSFSSREDGRQGVAAAVQLAPGANAMQTAKAVKARLAELSQNFPAGIQYAVPYDTSRFV 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      T      LV +V+++ +   ++ L+    + + +  TL ++  LG ++ + 
Sbjct: 336 EVAIGKVIQTLVEAVALVFLVMWLFLQNLRYTLIPTIVVPVCLAGTLGVMYALGFSVNMM 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++ G+VL IG+ VD  I+V E +      +  S   +      +    I    +  +   
Sbjct: 396 TMFGMVLAIGILVDDAIVVVENVERLMAEEGLSPLAATVKAMQQVSGAIVGITLVLVAVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMK 521
           + L F  G      R F++++ +SIL S   A++   A+   +           R     
Sbjct: 456 LPLAFMSGSVGVIYRQFSLSLAVSILFSGLLALTFTPALCATLLKPIAKGHHAERKGFFG 515

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +    +              RA    +  + + +   +            +  G   +
Sbjct: 516 WFNRRFAALTERFDLLNQRLVRRAGRCMLVYAAIVAGLGVAYTRMPESFVPYEDMGYYIV 575

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
           GV           ++ ++     +   Q           + Y          +  +  K 
Sbjct: 576 GVQLPPGATTERTKAMVKD---MEDYIQGRPATAQAEFLMGYSFSGMGQNAALAFVTLKD 632

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +         +      +    L    ++ V
Sbjct: 633 WSVRGAGQASWDEVQAFNQRFASLSDGTVMAV 664



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V            S +    +            +++   + ++    ++++  P 
Sbjct: 262 VRLADVARLEVGQLDYSFSSREDGRQGVAAAVQLAPGANAMQTAKAVKARLAELSQNFPA 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                      +     I K I  ++ +   + + +W+  +   + L     + + +  T
Sbjct: 322 GIQYAVPYDTSRFVEVAIGKVIQTLVEAVALVFLVMWLFLQNLRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG     G   N+  +  ++  IG  V+D +VV + +     +    +S      K++ +
Sbjct: 382 LGVMYALGFSVNMMTMFGMVLAIGILVDDAIVVVENV--ERLMAEEGLSPLAATVKAMQQ 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      LP+A   GSV      F++ +A  I+ +   ++     +   + 
Sbjct: 440 VSGAIVGITLVLVAVFLPLAFMSGSVGVIYRQFSLSLAVSILFSGLLALTFTPALCATLL 499

Query: 825 D 825
            
Sbjct: 500 K 500



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 53/122 (43%), Gaps = 6/122 (4%)

Query: 693  ALGAITTLILDITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            ++ A   LI+ I         +  G+  ++     ++T+IG +  + +++ +  R    L
Sbjct: 893  SIPAAVMLIVPIGALGSVLATSAVGLSNDVYFKVGLITIIGLAAKNAILIVEFARD---L 949

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
            +    S      ++        V TS+A  + V+P+A+  G+   S A  + FG++    
Sbjct: 950  HAQGHSLAQAALQAARLRFRPIVMTSLAFILGVVPLALASGAGASSQA-AIGFGVIGGML 1008

Query: 811  SS 812
            S+
Sbjct: 1009 SA 1010


>gi|184158825|ref|YP_001847164.1| cation/multidrug efflux pump [Acinetobacter baumannii ACICU]
 gi|332875195|ref|ZP_08443028.1| multidrug efflux pump BpeF [Acinetobacter baumannii 6014059]
 gi|183210419|gb|ACC57817.1| Cation/multidrug efflux pump [Acinetobacter baumannii ACICU]
 gi|322507363|gb|ADX02817.1| Cation/multidrug efflux pump [Acinetobacter baumannii 1656-2]
 gi|323518739|gb|ADX93120.1| cation/multidrug efflux pump [Acinetobacter baumannii TCDC-AB0715]
 gi|332736639|gb|EGJ67633.1| multidrug efflux pump BpeF [Acinetobacter baumannii 6014059]
          Length = 1059

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 55/503 (10%), Positives = 130/503 (25%), Gaps = 30/503 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPSNSPLQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 +    +      
Sbjct: 236 NAQGRL---------------TTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIEAGLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMT 460

Query: 482 GGAVRGFAITMGLSILISMFTAI 504
           G   + +        + ++ +A 
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAF 483



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 117/395 (29%), Gaps = 18/395 (4%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
            ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 652  AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 711

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   +  M           ++D++ +           +      + G      F+   
Sbjct: 712  AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 771

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +          L +         V  S+L ++                   
Sbjct: 772  RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 831

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 832  INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 890

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++     L  I  + + I   L    L   + N+     ++ L+G +  + ++
Sbjct: 891  FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTAGDNNIFTQIGLMVLVGLACKNAIL 950

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  R+   L     +      ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 951  IVEFARE---LEMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 1007

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              + + FG++      +F+     + I    +K+ 
Sbjct: 1008 MGVAVFFGMIGVTFFGLFLTPAFYVLIRTLNSKHK 1042



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 363 WRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                ++ R+   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 423 A---GLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479

Query: 807 VAASSS 812
           ++A +S
Sbjct: 480 ISAFNS 485


>gi|255327190|ref|ZP_05368265.1| protein-export membrane protein SecF [Rothia mucilaginosa ATCC
           25296]
 gi|255295808|gb|EET75150.1| protein-export membrane protein SecF [Rothia mucilaginosa ATCC
           25296]
          Length = 392

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 63/289 (21%), Positives = 126/289 (43%), Gaps = 12/289 (4%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R W +  ++L ++  +      G N GIDF+GG +  V     VD +     +     
Sbjct: 29  KRRLWLLLAAVLMAVSVLIPAVGGGFNLGIDFRGGSEFVVSKTAHVDTATGERIIHEKAK 88

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                +      N            ++    L++                +  VGP    
Sbjct: 89  DASDVRV----TNIAPGTIRAQMSKLSDDETLQVKAALQEGYGVSENDVTSSFVGPTWGA 144

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           ++ R+   G++   +  LI +   F+ W  +L +I  L   +  T+G +A FG E   +A
Sbjct: 145 DVTRQAFWGLVAFVVLALIGMAFYFRTWKMSLASIAGLFFTVVVTVGLYAAFGFEITPSA 204

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
           +   LT++ YS+ D VVV+D++R+N +  L     +F + I+ ++N+TL RS+ T++   
Sbjct: 205 IIGFLTILSYSLYDSVVVFDKIRENTEDVLERRDTTFAEQINLAVNQTLVRSINTAIVGV 264

Query: 781 ISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + V  +      + G   +   ++ +  GI+V    ++F++AP+   + 
Sbjct: 265 LPVGAILFIGAFILGAGTLQDLSLSLFVGILVGMFGTLFVSAPLYASLR 313


>gi|312891534|ref|ZP_07751048.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mucilaginibacter paludis DSM 18603]
 gi|311295997|gb|EFQ73152.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mucilaginibacter paludis DSM 18603]
          Length = 1084

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 79/612 (12%), Positives = 167/612 (27%), Gaps = 45/612 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  ++   G +  L        +D++P   P               +  +  
Sbjct: 8   KRPVTAIVISIVLIITGTVSIL-----LLPIDQYPDITPPI-----------VQVNGQFT 51

Query: 62  EDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
             D   V   +    +E  +          +        + ++F      +  A  V   
Sbjct: 52  GADAQTVEQTVATPIEEQVNGTPGMEYMQSNSTNNGQMTMNVTFKTGTDIDVAALDVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +      L     +  L         +++      +   +             D +    
Sbjct: 112 VSIATPLLPSVVSRLGLTVRAVNPSMLMMVAIYAPKGTHNVTFLDNYTNIYIQDALLRVP 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    +P ++     T A +       N        GV     +  
Sbjct: 172 GVGSINRF-TDDFSMRIWMNPDKMASYSLTPADVIAALNAQNVQVAAGTAGVPPQASTQT 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            +  +     +S              +    V +       +  +      +        
Sbjct: 231 YELGILVNGRLS------------KVSEFEKVIVKTIPGTGQLVYLKDVARVELGKFTFS 278

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +     +          +   T        A L+          V   +V     S
Sbjct: 279 SNSFVDGHKASYLQIYQAPGSNALETANGVYAALAKLKQTFPADVEYRVPFESVTVVKVS 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                GT     GLV +V+F+ +   +  L+   +I +++  T      LG T+   ++ 
Sbjct: 339 MQDVVGTLLKTLGLVAVVVFLFLQNWRSTLIPVLAIPVSIFGTFCFFIPLGFTINTLTMF 398

Query: 419 GIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G VL IG+ VD  I+V E ++      + S   +         + +    +      V +
Sbjct: 399 GFVLAIGIVVDDAIIVVEAVQHYIDHDHMSPKEATYKAMKDISAPVIAIALILAAVFVPV 458

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---------KMKSIDI 525
            F     G   + FAIT+ +S++IS F A+S+  A+   +++               +  
Sbjct: 459 GFIPGIVGRLYQQFAITIAISVIISAFIALSLTPALCTLLLKPSPAGQEAKGLNKWFVKF 518

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           N   +         ++        V I +L        LF    +  I  +    L V  
Sbjct: 519 NDWFQRITDSYTEGVKKSIKASRLVIIILLCICAGTYFLFQRKPSGFIPSEDDGNLYVTF 578

Query: 586 NRPVDLSVVRSN 597
             P   S  RS 
Sbjct: 579 QLPPASSTARSV 590



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 87/245 (35%), Gaps = 6/245 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             + V L  V            +      + ++L   Q    +++     +     K+ +
Sbjct: 258 TGQLVYLKDVARVELGKFTFSSNSFVDGHKASYLQIYQAPGSNALETANGVYAALAKLKQ 317

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
             P             + +  ++  +  ++ +   + + +++  + W   L  +  + + 
Sbjct: 318 TFPADVEYRVPFESVTVVKVSMQDVVGTLLKTLGLVAVVVFLFLQNWRSTLIPVLAIPVS 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T  FF   G   N   +   +  IG  V+D ++V + +     +    +S ++   K
Sbjct: 378 IFGTFCFFIPLGFTINTLTMFGFVLAIGIVVDDAIIVVEAV--QHYIDHDHMSPKEATYK 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ +     +  ++      +P+    G V      FAI +A  ++++A  ++ +   + 
Sbjct: 436 AMKDISAPVIAIALILAAVFVPVGFIPGIVGRLYQQFAITIAISVIISAFIALSLTPALC 495

Query: 821 LFIYD 825
             +  
Sbjct: 496 TLLLK 500



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 72/173 (41%), Gaps = 12/173 (6%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAA 725
              I   + S   + +++   ++ W      +  + I  +   L    +  +  N+ A   
Sbjct: 877  TTIYIFMFSITFVFLFLAALYESWSVPFSVLLAVPIGALGAILALIFVPSLTNNVYAQIG 936

Query: 726  VLTLIGYSVNDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            ++TLIG +  + +++  + ++R ++              ++++  L   + TS+A  + V
Sbjct: 937  LITLIGLAAKNAILIVEFAKVRVDL-----GEELIKSTLEAVSLRLRPIIMTSLAFILGV 991

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            LP+ +    G     +    +  G++ A++ +IF+   + + I  +     ++
Sbjct: 992  LPLVLATGAGAVARRTIGFTVLGGMLAASTIAIFVVPVLYVVITRFSYGKEKL 1044


>gi|329889187|ref|ZP_08267530.1| acrB/AcrD/AcrF family protein [Brevundimonas diminuta ATCC 11568]
 gi|328844488|gb|EGF94052.1| acrB/AcrD/AcrF family protein [Brevundimonas diminuta ATCC 11568]
          Length = 1078

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 64/498 (12%), Positives = 136/498 (27%), Gaps = 29/498 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   ++C IG             +   P   P                     
Sbjct: 8   RRPVFAAVAAIVLCVIGAAAFFF-----LPVRELPDVDPPVV---------SVSTNYAGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++       + R  ++ + + F+  R  ++ A+ V   +  
Sbjct: 54  SAEVIESRITEPIEQQIAGIQGVERINSTSRDGRSNVNIEFSLDRNIDDAANDVRDRISR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L        +         I++            +E +    R  +D+        
Sbjct: 114 VLGRLPDQADPPEVAKADSDSQPIMIMFLRST--TMDRMELTDYARRYLVDRFATVPGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    D   +     T   +       N               +     
Sbjct: 172 QVNIFGEQRYAMRIWLDAGAMAARGLTVTDVENALNSQNVELPAGALESAQKDYTVRVAR 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKP-------------VVDISFDEMGARRFFEVTRD 288
              D  + + + +    +       +               V  +     A         
Sbjct: 232 NYADPADFAQLPIGTRGSASTATGAQASGTLGAASAAMTNGVTGALIGNAAYVTRLGDIA 291

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
            I +  A                  + +AQ +     E A  L   +     P     V 
Sbjct: 292 RIEEAPAEARRLFRGNGVDQIGLAVTRQAQSNDLQISEGARKLMEEVAHSLPPGTTLEVG 351

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
             N      +      T  I   LV +V F+ +   +  ++      + ++ T  +L+ L
Sbjct: 352 SDNSVFTSHAIDEVWITIGISMALVALVNFIFLGSLRAAIIPSVVAPICLLATFIVLAPL 411

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           G +L L ++  +VL IGL VD  I+V E I+      +    + + G  + +  +  + I
Sbjct: 412 GFSLNLLTLLALVLAIGLVVDDAIVVVENIQRRLDHGEPPLVAAERGARQVFFAVVATTI 471

Query: 469 TALIATVVLFFFGGGAVR 486
             L     L F  G   R
Sbjct: 472 VLLSVFAPLLFLPGYVGR 489



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 57/138 (41%), Gaps = 8/138 (5%)

Query: 696  AITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            A+  L + +    G F L   G   N+ +   ++ LIG +  + +++ +      +L   
Sbjct: 915  AVIMLTVPLAAAGGLFGLLMAGSSLNIYSQIGLIILIGVAAKNGILIVEFAN---QLRDQ 971

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
              S R+ I +S +  L   + TS+A     LP+ +W   G     +  + +  G + A  
Sbjct: 972  GRSIREAIIESSSLRLRPIIMTSIATAFGALPLVLWQGAGAGSRQTIGVVIFTGAMFATV 1031

Query: 811  SSIFIAAPILLFIYDWRA 828
             ++F+   I   +  +  
Sbjct: 1032 LTLFVVPVIYGVLARFTK 1049



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 66/206 (32%), Gaps = 4/206 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    E+       F+    ++  L   +    + +  +     + +++   +P  T  
Sbjct: 289 DIARIEEAPAEARRLFRGNGVDQIGLAVTRQAQSNDLQISEGARKLMEEVAHSLPPGTTL 348

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                    +   I +  + + IS   + +  +I       A+       + +  T    
Sbjct: 349 EVGSDNSVFTSHAIDEVWITIGISMALVALVNFIFLGSLRAAIIPSVVAPICLLATFIVL 408

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A  G   NL  + A++  IG  V+D +VV + +    +            ++   +    
Sbjct: 409 APLGFSLNLLTLLALVLAIGLVVDDAIVVVENI---QRRLDHGEPPLVAAERGARQVFFA 465

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSF 797
            V T++       P+    G V   F
Sbjct: 466 VVATTIVLLSVFAPLLFLPGYVGRLF 491


>gi|254995371|ref|ZP_05277561.1| preprotein translocase subunit SecF [Anaplasma marginale str.
           Mississippi]
 gi|255003556|ref|ZP_05278520.1| preprotein translocase subunit SecF [Anaplasma marginale str.
           Puerto Rico]
 gi|255004683|ref|ZP_05279484.1| preprotein translocase subunit SecF [Anaplasma marginale str.
           Virginia]
          Length = 309

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 4/281 (1%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRSN 597
              F++ R   + IS++  + S  L+   G+  G DF GG+      +     +  VR+ 
Sbjct: 11  NFNFIKHRKLALLISLVLLLGSALLIALKGVTLGADFTGGMVANFSLDDGHSTVEQVRAA 70

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L    +  +S Q F       + +            +  +        +   T +  + V
Sbjct: 71  LSDAGLSGLSVQGFGDSGQEFMVVFRGTAGPGGSDELQRIKDAI--NGIGAITYKRLDYV 128

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G ++    + +G++ V+ S + M +Y+  RFK  FA+G +  L+ D+  T+G  +  GIE
Sbjct: 129 GAQVGVAQVTRGVIAVLCSLVGMFLYLCCRFKLQFAVGGVLALVHDVAITMGMVSATGIE 188

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTS 776
           F L A A VL +IGYSVND VV+YDR+R+  +  +        +I+  IN TL R++ TS
Sbjct: 189 FGLPATAGVLMIIGYSVNDSVVIYDRIRELARGESVHGKDVGGIINAGINSTLSRTLLTS 248

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
               ++ +P+ +     +    + + FG++V   SSIFI+ 
Sbjct: 249 GTTLLAAVPLILLCEGAVHDLGVIVFFGVIVGTYSSIFIST 289


>gi|218438020|ref|YP_002376349.1| preprotein translocase subunit SecF [Cyanothece sp. PCC 7424]
 gi|218170748|gb|ACK69481.1| protein-export membrane protein SecF [Cyanothece sp. PCC 7424]
          Length = 312

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 149/299 (49%), Gaps = 10/299 (3%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              I+   M      + +S       +           I       +     +P+  S V
Sbjct: 12  WWSISGAAMLISLMAMIVSFAIIKTPLRPSIDFVGGTRIQLALDCSIPNNCQQPISTSSV 71

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           +  L   ++G+ S Q       + + ++ Q  +   +T++   + +KI    P       
Sbjct: 72  QEILTEQELGNSSVQVI---DQYTLSIRTQDLNVEQRTQLQTALNEKIGTFDPE--TIQI 126

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           + VGP + +EL   GI+ +++S   +++Y+  RF++ +AL AI  L  D   T G FA+ 
Sbjct: 127 DTVGPTVGQELFTAGILALLVSFFGIIVYLSFRFQFDYALVAILALFHDAFITAGVFAIL 186

Query: 715 GI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           G+    E +   +  +LT+IG+SVND V++YDRMR+ +      +S  ++ D+++++TL 
Sbjct: 187 GLVLGVEVDSLFLVGLLTIIGFSVNDTVIIYDRMRE-VSTQKPELSINEVADQAVDQTLT 245

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           RSV T++   + +L + ++GG+ +  FA+ +  G ++ A SSIF+A+P++ +  + + K
Sbjct: 246 RSVNTTLTTLLPLLSIFLFGGTTLKYFALTLIIGFILGAYSSIFVASPLVAWWRERQNK 304


>gi|255691192|ref|ZP_05414867.1| RND efflux system, inner membrane transporter CmeB [Bacteroides
           finegoldii DSM 17565]
 gi|260623104|gb|EEX45975.1| RND efflux system, inner membrane transporter CmeB [Bacteroides
           finegoldii DSM 17565]
          Length = 1063

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 66/617 (10%), Positives = 162/617 (26%), Gaps = 48/617 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  +G +           ++++P   P   +                 
Sbjct: 8   KRPVMAMSISVLIMIVGFISLF-----TLPVEQYPDIAPPTVM---------VSATYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
           + D V   + M  +E  + ++       +        I + F      +  A  V   + 
Sbjct: 54  DADAVMNSVIMPLEESINGVENMMYITSNATNSGTATIQVYFKQGTDPDMAAVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  +  K  + T+  +   + ++              +  +    I +I   E  
Sbjct: 114 KAQGLLPAEVTKIGVTTSKRQTSFLQINSLVSTDDRYDETFLANYLDINVIPEIKRIEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +        +     P  + Q     + ++      N        G           
Sbjct: 174 GDVMELGD-TYSMRIWLKPELMAQYGLVPSDVTAILGEQNLEAPTGSLGADSKNVFQ--- 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                     +    +   E             +          
Sbjct: 230 -------------FTMKYRGRLKSVEEFQNTVLRAEDDGSTLRLKDVAKVELGALSYSFH 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      +    A  +     E        +          +    +      S  
Sbjct: 277 GKTNGHPGVTFMAFQVAGANATSVNEAITDKLNEMSKDLPAGTEFLSMMSSNDFLFASIH 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV++V++  +   K  L+   SI ++++ T A L+  G ++ + ++  +
Sbjct: 337 NVVETLVIAIILVILVVYFFLQDFKSTLIPSISIIVSLVGTFACLTAAGFSINILTLFAL 396

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG  VD  I+V E ++ +      S + +     S     +       +   + + F
Sbjct: 397 VLAIGTVVDDAIVVVEAVQAKFDSGYTSPYLATKDALSDVTMAVISCTCVFMAVFIPVTF 456

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------------ID 524
            GG +      F ITM  S+ +S   A+++  A+   ++R                   +
Sbjct: 457 MGGTSGIFYTQFGITMATSVGLSCICALTLCPALCAMMMRPASGTKSAKSINGRVRAAYN 516

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +  +        +             +    ++    +  T       + +G + + V 
Sbjct: 517 ASYNAMLGKYKKGVMFFIHHRWMVWTSLVCCIALLVYLMSTTKTGLVPQEDQGVMMVNVS 576

Query: 585 ANRPVDLSVVRSNLESL 601
                 L      ++ +
Sbjct: 577 VAPGSTLEETNKVIDKV 593



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/487 (10%), Positives = 136/487 (27%), Gaps = 22/487 (4%)

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            ++      ++ G + +    +  Y                     +          SI 
Sbjct: 12  MAMSISVLIMIVGFISLFTLPVEQYPDIAPPTVMVSATYTGADADAVMNSVIMPLEESIN 71

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST----------IFDSNI 468
           G+   + +  ++       I+   ++      +     +R              I  +  
Sbjct: 72  GVENMMYITSNATNSGTATIQVYFKQGTDPDMAAVNVQNRVSKAQGLLPAEVTKIGVTTS 131

Query: 469 ---TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
              T+ +    L          F        +I     I  V  +M     Y     +  
Sbjct: 132 KRQTSFLQINSLVSTDDRYDETFLANYLDINVIPEIKRIEGVGDVMELGDTYSMRIWLKP 191

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             ++++ L+P  +              S+     ++              +      + A
Sbjct: 192 ELMAQYGLVPSDVTAILGEQNLEAPTGSLGADSKNVFQFTMKYRGRLKSVEEFQNTVLRA 251

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                   ++   +          +     +  V            T V E +  K+ E+
Sbjct: 252 EDDGSTLRLKDVAKVELGALSYSFHGKTNGHPGVTFMAFQVAGANATSVNEAITDKLNEM 311

Query: 646 VPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
                     +     +  L   I   +  ++I+ I +++ ++     +   L    ++I
Sbjct: 312 SKDLPAGTEFLSMMSSNDFLFASIHNVVETLVIAIILVILVVYFFLQDFKSTLIPSISII 371

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T       G   N+  + A++  IG  V+D +VV + ++       T  S     
Sbjct: 372 VSLVGTFACLTAAGFSINILTLFALVLAIGTVVDDAIVVVEAVQAKFDSGYT--SPYLAT 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
             ++++     +  +       +P+   GG+       F I MA  + ++   ++ +   
Sbjct: 430 KDALSDVTMAVISCTCVFMAVFIPVTFMGGTSGIFYTQFGITMATSVGLSCICALTLCPA 489

Query: 819 ILLFIYD 825
           +   +  
Sbjct: 490 LCAMMMR 496



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/277 (9%), Positives = 78/277 (28%), Gaps = 11/277 (3%)

Query: 560  SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
               ++         +                +S   +  + +     +  N        V
Sbjct: 766  YRVMMQASPEYRLDEHALKNMYVRNGTEMAPVSQFVTIKKVMGAEVANRFNLYSSITANV 825

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                       Q  + E+ ++ +                         K +    I  + 
Sbjct: 826  NPAAGYSSGEVQKAINEVAEQTLPMGYGYEYGGMAREEASSGGA----KTLFVYGICIVL 881

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + +   ++ +      I ++   +  +  F  +FG+E N+     V+ LIG      +
Sbjct: 882  IFLILACLYESFLIPFAVIFSVPFGLMGSFLFAKIFGLENNIYLQTGVIMLIGLLAKTAI 941

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ +     ++     +   +    +    L   + T +     +LP+      G +   
Sbjct: 942  LITE---YAIERRRKGMGIIESAYSAAQARLRPILMTVLTMIFGMLPLMFSSGAGANGNS 998

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S    +  G+ V   + +F+     +     + K  +
Sbjct: 999  SLGTGVVGGMAVGTLALLFVVPVFYIAFEFLQEKIRK 1035


>gi|317179742|dbj|BAJ57530.1| preprotein translocase subunit SecD [Helicobacter pylori F30]
          Length = 525

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 156/544 (28%), Positives = 274/544 (50%), Gaps = 31/544 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     +I++     +G+  ++P+ L               +I+LGLDLRGG +++L V
Sbjct: 1   MKLFNPRLIVFICALLLGVGFSVPSLLETKGP----------KITLGLDLRGGLNMLLGV 50

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+ +       +  L    KK+ I +  ++     I+    D    + +   +     
Sbjct: 51  QTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFELLDEDEAKKLDALLVEL-- 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                          +    +  S+ L     +++  + I Q + IIR R+DQ G++E  
Sbjct: 109 --------QGHSQFEIKKEAEFYSVKLIPLEQEELRKNTILQVIGIIRNRLDQFGLAEPI 160

Query: 181 IQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + + G   I +QLPG +      R ++L+  +A +    V              +    G
Sbjct: 161 VIQQGKEEISVQLPGIKTLEEERRAKELISRSAHLQMMAVDEEHNKDAMTMTDLEAQKLG 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
              L D +    ++   + I    +         + ++PVV  + D  GA+ F + +  N
Sbjct: 221 SVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVSFTLDAQGAKIFGDFSGAN 280

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +GK +A+VLD +V +APVI + I  G  QISGNF++  A  LA  LR+G++   + ++E+
Sbjct: 281 VGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDLAIALRSGAMSAPIQVLEK 340

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG DSI     A+V G +L++ FM++ Y   G++A  ++ +N+ L +A++++ G
Sbjct: 341 RIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIACLALVVNLFLIVAVMAIFG 400

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  ++ +G+  A   IFDSNIT
Sbjct: 401 ATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKAIHLGYINASRAIFDSNIT 460

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + +   ++              
Sbjct: 461 SLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIYQALLPKLTQTKSLYFWFG 520

Query: 530 RFFL 533
               
Sbjct: 521 VNKR 524



 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 344 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 403 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 496


>gi|258645497|ref|ZP_05732966.1| RND efflux system, inner membrane transporter CmeB [Dialister
           invisus DSM 15470]
 gi|260402850|gb|EEW96397.1| RND efflux system, inner membrane transporter CmeB [Dialister
           invisus DSM 15470]
          Length = 1046

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 71/549 (12%), Positives = 156/549 (28%), Gaps = 41/549 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  +I   G+L           +DR+P   P               + +    
Sbjct: 8   RPIFAIVLALVISIAGMLCIF-----TLPVDRYPKITPP-------------QVSVSAAY 49

Query: 63  DDFVNGFLQMYSDELRS----FLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
               +  +     E+       ++       +     +  +T+ F      +    +V  
Sbjct: 50  PGADSEVVAQTVAEVIEKNVVGVEDLDSISSTSNSNGSYSLTVQFVSGTDSDMATIRVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L    +   + T        ++      +                +D++   
Sbjct: 110 GVTSSEAALPDTVRSIGVTTRKSSSGMALVVSLLSPKGTYDETFLKNYFSMNYVDELKSI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+++ Q   T +++       N        G   +  + 
Sbjct: 170 PGVGSVQEFGS-DFGMRIWLDPAKMAQNKVTASEVISAVSTQNRQVAAGNVGTAPVDKNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY+V  +  ++                +    +                 I       
Sbjct: 229 AFQYIVTVQGRLA-------------TAEEFGNIVIRTNSDGSMLRMKDVARIELDAKNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           S     +   TI       A             +   N      
Sbjct: 276 DFIARSGDHESAAVAFSLTDDANAIDTINKIKAKLAEDSKSFPADMTYRISMDNTDFIYA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V +++++ +   +  L+   ++ +++  T     +LG T+   ++
Sbjct: 336 SVKEVLQTFFEALLIVAMIVYIFLQNWRSTLIPMIAVPVSLFGTFGAFEVLGFTINTLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +  E R N      +      +  S +    I      V 
Sbjct: 396 FAMVLAIGLVVDDAIVVIEAVEYEMRYNNLPPKDATVAAMEKVQSPVIGVAIVLAAVFVP 455

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      + FA+T+ +S+LIS F A+S+  A+   ++R+ K  +        +  
Sbjct: 456 VAFLGGIMGILYKQFALTIAVSVLISAFVALSLTPALCAGMLRHHKEGAERGELQKFWDK 515

Query: 534 IPDCIAIQF 542
             D      
Sbjct: 516 FNDWFDRMI 524



 Score = 90.5 bits (222), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 48/427 (11%), Positives = 128/427 (29%), Gaps = 21/427 (4%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           L  + +T        + +      DS++              S   +L         T  
Sbjct: 75  LDSISSTSNSNGSYSLTVQFVSGTDSDMATIRVQNGVT----SSEAALPDTVRSIGVTTR 130

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSIL--ISMFTAISIVRAMMIFIIRYKKMKS 522
            S+    +   +L   G            ++ +  +     +  V+           +  
Sbjct: 131 KSSSGMALVVSLLSPKGTYDETFLKNYFSMNYVDELKSIPGVGSVQEFGSDFGMRIWLDP 190

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +                  R    G   +                      +    + 
Sbjct: 191 AKMAQNKVTASEVISAVSTQNRQVAAGNVGTAPVDKNQAFQYIVTVQGRLATAEEFGNIV 250

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +  N    +  ++                    +    + +   D       +  +K K+
Sbjct: 251 IRTNSDGSMLRMKDVARIELDAKNYDFIARSGDHESAAVAFSLTDDANAIDTINKIKAKL 310

Query: 643 TEIVPLSTIQNTEIVGPKISREL-------IRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            E         T  +    +  +       ++     ++I  +AM++YI+++  W   L 
Sbjct: 311 AEDSKSFPADMTYRISMDNTDFIYASVKEVLQTFFEALLI--VAMIVYIFLQ-NWRSTLI 367

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  + + +  T G F + G   N   + A++  IG  V+D +VV + +   M+    ++
Sbjct: 368 PMIAVPVSLFGTFGAFEVLGFTINTLTLFAMVLAIGLVVDDAIVVIEAVEYEMRY--NNL 425

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSS 812
             +D    ++ +     +  ++      +P+A  GG   ++   FA+ +A  ++++A  +
Sbjct: 426 PPKDATVAAMEKVQSPVIGVAIVLAAVFVPVAFLGGIMGILYKQFALTIAVSVLISAFVA 485

Query: 813 IFIAAPI 819
           + +   +
Sbjct: 486 LSLTPAL 492



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 94/274 (34%), Gaps = 19/274 (6%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      + +   +   + +S   +  +S  I  I+  N                  
Sbjct: 778  YRMDPSANKFLTVKDSSGNMIPISTFITPKKSNAISVITRYNNFPAVKISGNQADGYSSG 837

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A   + E+  + +      + ++++             K I  + +  + + + +   +
Sbjct: 838  QALDALEEVAAEVLPTGYSYAFVESSAQEKEAGG-----KTIYALALGMLFVFLSLAALY 892

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD--RMR 745
            + W      +  +            +F +  ++     +LT+IG +  + +++ +  ++R
Sbjct: 893  ESWKVPFVVLFGMPTGFFGACLGAWMFNVYNDIYFQIGLLTIIGLAAKNAILIVEYAKVR 952

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
             N       ++      ++    L   + TS+A  +  +P+A+    G +      I + 
Sbjct: 953  TNA-----GMAPLKAAVEASKIRLRPILMTSLAFILGNVPLALSTGAGANSRSEMGIAVV 1007

Query: 803  FGIVVAASSSIFIAAPILLFIYDWR---AKNARI 833
            FG++ A +  IFI   + + I  +     +  ++
Sbjct: 1008 FGVLSATAFQIFIVPMLFIVIEKFHFGGFRKKKL 1041


>gi|149913360|ref|ZP_01901893.1| putative acriflavin resistence protein [Roseobacter sp. AzwK-3b]
 gi|149812480|gb|EDM72309.1| putative acriflavin resistence protein [Roseobacter sp. AzwK-3b]
          Length = 1043

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 65/683 (9%), Positives = 186/683 (27%), Gaps = 39/683 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   GL+      L +  +++FP  +P          +          
Sbjct: 8   KRPRFAGVISIVLFLAGLIA-----LTRMPVEQFPDIVPP---------QVSVSASYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI-TLSFADSRFKENIADKVTLFLQ 120
             + +   +    ++    +        +       I  +SF      +     V   + 
Sbjct: 54  GAEVLEQTVAQVIEDQIVGVDDMIYMSSTSGADGTYILNISFEVGTDPDIATVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  +    +    ++      +       + +       +D+I   E  
Sbjct: 114 LAEPLLPSEVRQTGVRVAKKSSSLLMGIALYAESEALEGSDLTNYARLNLMDRIKRVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +  R+  L    + ++      N        G + + +  G Q
Sbjct: 174 GDASMFGANEFAMRVNLNVDRMAALGLVPSDVTAALRSQNLQAAIGRVGGQPVTEDPGLQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  K  +S                     I    +            +          
Sbjct: 234 LNISTKGRLS-------------SPEDFGAIILRAGVDGSVVRIRDVAEVTLGEKNSDVV 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +     ++A  +    +A         +   +      S +
Sbjct: 281 TSFDGRPATLIGIYLAPGGNAIAAADSAKAMMEAAKADFPEGMAYEIVSDSSTFVKESIA 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T      LV++V+F+ +   +  +V   ++ + ++ T A++  +G +L   S+  +
Sbjct: 341 EVEHTLIEAFILVVLVVFIFLGSLRATIVPLIAVPVALVGTFAVMLAMGFSLNTVSLLAL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSV-----FCSLDMGFSRAYSTIFDSNITALIATV 475
           VL IG+ VD  I+V E +  +  +N  +       +     + A   I    ++  +   
Sbjct: 401 VLAIGIVVDDAIVVVEAVEAKMEQNPEMTPAEAASAAMSEITGAILAITMVLLSVFVPVA 460

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPLS 529
            +    G   + FA+ + +S++IS   A+++  A+   I++            I      
Sbjct: 461 FIPGISGQLFQQFAVAVSVSMVISAINALTLSPALCAIILKPHHGPKKGIMGAISRGIDK 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                         RA      +   F++               + +G   +        
Sbjct: 521 GRDGYTKIAGAIARRAVLGLALLIGAFALTGGLFKAVPTGFLPSEDQGSFIVETRLPEAA 580

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            ++        ++   +     +   +                  L  +++        +
Sbjct: 581 SVNRTLVAQREVEEILLGLPGVESVTSVTGFSLLDGITKSNAAFALVSMQEFAERTTEET 640

Query: 650 TIQNTEIVGPKISRELIRKGIVG 672
           ++        +    +    I+ 
Sbjct: 641 SVFYAINQAMRQGAAIRSAQIIA 663



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 88/287 (30%), Gaps = 10/287 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                       S  +  T    Y        ++ V +     + V          G +S 
Sbjct: 754  AYINDFNLFGRSWQVRMTAEPEYRDAIDDIARIQVRSASGEMVPVGAFARAEYITGPMSL 813

Query: 609  QNFDGEKNFLVRLQYQPG-DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
              ++ ++   V      G  S A    +E V               T +   + + +   
Sbjct: 814  SRYNNQRAAKVSGNPAEGFSSGAALSAMEEVAAANLPPGYDFKWTGTALQEKQAAGQTTV 873

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
               + ++ +    L  + +   W   +  + +++  +   +    L G+ FN+ A   ++
Sbjct: 874  ILALAMLFAY---LFLVALYESWTIPVPVMLSVVFGVAGAVAALLLAGLPFNIYAQIGLV 930

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+  +  + +++ +  +                    +      + TS A    ++P+ 
Sbjct: 931  VLLALAAKNAILIVEFAK---ARREAGEEILQAAISGAHARFRAVMMTSFAFIAGLIPLV 987

Query: 788  VWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G+ +         +A G++ AA   IF+   + +     R +  
Sbjct: 988  TAEGASMLSRRGVGTGVAGGMLAAALVGIFVIPALYVVFQSLRERVK 1034



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 67/151 (44%), Gaps = 5/151 (3%)

Query: 673 VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +I + I +++ ++I        +  +  + + +  T       G   N  ++ A++  IG
Sbjct: 346 LIEAFILVVLVVFIFLGSLRATIVPLIAVPVALVGTFAVMLAMGFSLNTVSLLALVLAIG 405

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + + +        ++  +    +++E  G  +  +M      +P+A   G
Sbjct: 406 IVVDDAIVVVEAV-EAKMEQNPEMTPAEAASAAMSEITGAILAITMVLLSVFVPVAFIPG 464

Query: 792 ---SVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               +   FA+ ++  +V++A +++ ++  +
Sbjct: 465 ISGQLFQQFAVAVSVSMVISAINALTLSPAL 495


>gi|254524966|ref|ZP_05137021.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14]
 gi|219722557|gb|EED41082.1| RND transporter, HAE1 family [Stenotrophomonas sp. SKA14]
          Length = 1036

 Score =  167 bits (421), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 73/583 (12%), Positives = 151/583 (25%), Gaps = 41/583 (7%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L   I   G+L       P+  ++R+P+  P               + +          
Sbjct: 1   MLAIFIILAGVLAI-----PRLAVERYPAVAPP-------------SVSIYASYPGASPQ 42

Query: 69  FLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
            L       +   L                 +  IT +F      E     V   ++ + 
Sbjct: 43  TLNDAVVGLIERELSSVKHLLYFESSVDTSGEASITATFKPGTNPELAQVDVQNRIKAIE 102

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +L    ++N L         ++L                  + R  I+++   +   + 
Sbjct: 103 PRLPRSVRQNGLFVEAADSGFLMLVGLRSPDASVSEAALGDFMARNIIEELRRIDGVGRV 162

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                    +    DP+RL     T + ++      N        G             +
Sbjct: 163 QLFGA-EQAMRVWLDPTRLTGYGLTMSDVATAIEQQNLEISPGRIGDSPGVAGQRITVPL 221

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               ++S                +    +        R        +         G   
Sbjct: 222 SADGQLS-------------TPEQFAAIVLRAGADGSRVVLGDVARVELGAQSYAWGTRE 268

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                  A    +   +   T        A L         + +          S     
Sbjct: 269 DGHPATAAGVQLRPGANAVRTAAAVRERMAELAPLLPRGVESSIPFDTAPFVKISIQKVV 328

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T      LV  V+++ +   ++ L+      + ++ T A++  LG ++ + ++ G+VL 
Sbjct: 329 QTLLEAMLLVFAVMYLFLQNWRYTLIPALVAPIALLGTFAVMLALGFSINVLTMFGMVLA 388

Query: 424 IGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           IG+ VD  I+V E +      +      +           +    +  +   + +    G
Sbjct: 389 IGIIVDDAIVVVEGVERIMAEEGLPPREATIKAMRELTGAVIGITLVLIAVFIPMALASG 448

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R F + M +SIL S   A+S+  A+   ++R           L   F       
Sbjct: 449 SVGAIYRQFTVAMAVSILFSALLALSLTPALCATLLRPNSHGHHGRGGLFGAFNRGFERM 508

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
               +     V       +     L    L       G     
Sbjct: 509 TGRYQRGVASVLQRSGRVMGVFAALVAALLLGLHWLPGAFLPE 551



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 76/223 (34%), Gaps = 6/223 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       Q      +                 ++V     +     ++  ++
Sbjct: 245 SRVVLGDVARVELGAQSYAWGTREDGHPATAAGVQLRPGANAVRTAAAVRERMAELAPLL 304

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I+K +  ++ + + +   +++  + W + L       + + 
Sbjct: 305 PRGVESSIPFDTAPFVKISIQKVVQTLLEAMLLVFAVMYLFLQNWRYTLIPALVAPIALL 364

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N+  +  ++  IG  V+D +VV + +     +    +  R+   K++
Sbjct: 365 GTFAVMLALGFSINVLTMFGMVLAIGIIVDDAIVVVEGV--ERIMAEEGLPPREATIKAM 422

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            E  G  +  ++      +PMA+  GSV      F + MA  I
Sbjct: 423 RELTGAVIGITLVLIAVFIPMALASGSVGAIYRQFTVAMAVSI 465



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 62/150 (41%), Gaps = 5/150 (3%)

Query: 668 KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           +    +++S + + + +   ++ W   L  +  + L +   +    L G+  ++     +
Sbjct: 852 QAPWLLLLSMLVVFLVLAALYESWSIPLAVMLVVPLGLLGAVAAVLLRGMPNDVFFKVGM 911

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +T+IG S  + +++ +  R   +L        +   ++    L   V TS+A  + V+P+
Sbjct: 912 ITVIGLSAKNAILIVEFAR---QLQQQGRGLAEAALEAARLRLRPIVMTSLAFALGVVPL 968

Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +  G+        +  G+     S+  +A
Sbjct: 969 MLAQGAS-KETQQAIGTGVFGGMVSATVLA 997


>gi|330829118|ref|YP_004392070.1| protein-export membrane protein SecF [Aeromonas veronii B565]
 gi|328804254|gb|AEB49453.1| Protein-export membrane protein SecF [Aeromonas veronii B565]
          Length = 305

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/281 (27%), Positives = 145/281 (51%), Gaps = 5/281 (1%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R R+ G+  SIL ++ S+ +L  +GL  G+DF GGI L        +   + + L S   
Sbjct: 12  RWRYIGLWASILLTVASVAILLVNGLTLGLDFTGGILLEFHIQTLKEAHELNAMLVSPLA 71

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
           G +   +      +L++L        A     ++      ++     +  T IVGP++  
Sbjct: 72  GAVELSSAGIPGEWLIKLPPHELPWPAA----DLATMLTQQLGMPVELLRTTIVGPQVGA 127

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           EL ++G++ V+++++AM  Y+  RF+W  A+G + +++ D    LG  +LF IEF+L  +
Sbjct: 128 ELFQQGMLAVLVASLAMSAYLAFRFEWRQAIGILLSVVHDAIVALGLLSLFQIEFDLNII 187

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A ++ +IGYS+ND +V+ DR+R  +    T +   +  D +I  T  R++ TS     +V
Sbjct: 188 AGLMAVIGYSLNDSIVISDRLRD-LLSSRTQMGIHECSDVAIKATFSRTMITSGTTLFTV 246

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             + ++GG  +  F+  +  GI+V   SSI +A+ +   + 
Sbjct: 247 GALLLFGGDALYGFSFTLFAGILVGTVSSITVASTVQELLG 287


>gi|260776647|ref|ZP_05885542.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260607870|gb|EEX34135.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 1060

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/694 (10%), Positives = 181/694 (26%), Gaps = 42/694 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  +I   G +        Q  +  +P  +P   +                 
Sbjct: 8   RRPIFASVLSILIFIGGAISVW-----QLPITEYPEVVPPTVVVTA---------TYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    +E  + ++                +T++FA     +     V   + 
Sbjct: 54  NPKVIADTVASPLEEEINGVEDMLYMSSQATSDGVMTLTVTFAIGTDVDKAQTLVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L    ++  +VT        ++            +  +        D++   E  
Sbjct: 114 RALPRLPETVQRLGVVTEKSSPDLTMVVHLISPDERYDLLYLANYAALNVKDELARIEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP+++  L    +++       N        G +   DSD   
Sbjct: 174 GAVRLFGGGEYSMRIWLDPNKVAALDMNPSEVIAAIQEQNQQAAAGSLGAQPSGDSDFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I       +         I          
Sbjct: 234 LINVKG--------------RLSEVEEFENIIIKVGEDGQVNRLRDVARIELGAETYSLR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +        L           +         GS  
Sbjct: 280 SMLDNQDAVAIPIFQASGSNAIQISDDVRAKMEELSQTFPQGVSYEIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + L+G +L   S+ G+
Sbjct: 340 AVVQTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMYLMGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +     +  +   + +         I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIEEGLAPIAATEKAMREVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIF----------IIRYKKMKSIDINP 527
               G   + FA+T+ +S  IS   ++++  A+              +     +      
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLRGHDQPKDWLTRAMDRLFGRFI 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            + F  + +  A+ +  A    + +  L  +  + LL      +     G +        
Sbjct: 520 FAPFNKLFNRGAMVYGYAVTKTIRLGALIGLMYVGLLGLTAYQFDQTPTGYVPGQDKQYL 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                +  +         I   +        V                      +   + 
Sbjct: 580 VAFAQLPDAASLDRTEAVIREMSEIALAQPGVEHSVAFPGLSINGFTNSPNSGIVFTPLA 639

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               +    +        + +    +  + IA+ 
Sbjct: 640 DFDERQDPSLSANAIAMQLNQKFASIPDAFIAIF 673



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 55/147 (37%), Gaps = 8/147 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   A+  I  + L ++   G     G + N+     ++ L+G +  + +++ +  ++  
Sbjct: 903  RLPMAIILIIPMTL-LSAISGVIMW-GSDNNIFTQIGLIVLVGLATKNAILIVEFAKE-- 958

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  + + ++    L   + TS+A  + V+PM      G  +  +  I +  G+
Sbjct: 959  -LQDKGRTVMEAVLEASRLRLRPILMTSIAFIMGVVPMVFSTGAGAEMRQAMGIAVFSGM 1017

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      + +       +        +
Sbjct: 1018 IGVTVFGLLLTPLFYYVLAKRSPAKQK 1044



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 10/126 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 363 WRASIIPLVAVPVSLVGTFAFMYLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIE 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV 806
                ++     +K++ E  G  V T++      +P A   G        FA+     I 
Sbjct: 423 E---GLAPIAATEKAMREVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALT----IT 475

Query: 807 VAASSS 812
           ++   S
Sbjct: 476 ISTFIS 481


>gi|193077851|gb|ABO12728.2| cation/multidrug efflux pump [Acinetobacter baumannii ATCC 17978]
          Length = 1059

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/503 (10%), Positives = 130/503 (25%), Gaps = 30/503 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPSNSPLQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 +    +      
Sbjct: 236 NAQGRL---------------TTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIEAGLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMT 460

Query: 482 GGAVRGFAITMGLSILISMFTAI 504
           G   + +        + ++ +A 
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAF 483



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 117/395 (29%), Gaps = 18/395 (4%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
            ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 652  AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 711

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   +  M           ++D++ +           +      + G      F+   
Sbjct: 712  AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 771

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +          L +         V  S+L ++                   
Sbjct: 772  RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 831

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 832  INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 890

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++     L  I  + + I   L    L   + N+     ++ L+G +  + ++
Sbjct: 891  FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTAGDNNIFTQIGLMVLVGLACKNAIL 950

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  R+   L     +      ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 951  IVEFARE---LEMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 1007

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              + + FG++      +F+     + I    +K+ 
Sbjct: 1008 MGVAVFFGMIGVTFFGLFLTPAFYVLIRTLNSKHK 1042



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 363 WRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                ++ R+   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 423 A---GLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479

Query: 807 VAASSS 812
           ++A +S
Sbjct: 480 ISAFNS 485


>gi|298486913|ref|ZP_07004967.1| Inner membrane efflux transporter of RND family multidrug efflux
           pump [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298158578|gb|EFH99644.1| Inner membrane efflux transporter of RND family multidrug efflux
           pump [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 1044

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/519 (13%), Positives = 148/519 (28%), Gaps = 39/519 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTV---------KISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASINLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       + S       +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVALASDNESVTGTQIS----STLLDQLSRVDGVG 169

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +S      N        G            
Sbjct: 170 DVQTLGSG-YAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVTGQQLNA 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 229 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 276 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSI 335

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 336 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 395

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           +VL IGL VD  I+V E +     + Q S   +         S  I  + + + +   + 
Sbjct: 396 MVLAIGLLVDDAIVVVENVERVMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMA 455

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF G      R F++T+  ++L+S+  A+++  A+   +
Sbjct: 456 FFSGSTGIIYRQFSVTIVSAMLLSVLVAMTLTPALCATM 494



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 11/254 (4%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 239 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 298

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 299 GEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 358

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G  ALFG   N   + A++  IG  V+D +VV + +    
Sbjct: 359 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 416

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S  +   KS++E     +  ++      +PMA + GS       F++ +   +
Sbjct: 417 VMSEEQLSPLEATRKSMDEITSALIGIALVLSAVFIPMAFFSGSTGIIYRQFSVTIVSAM 476

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ +   +
Sbjct: 477 LLSVLVAMTLTPAL 490



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 86/265 (32%), Gaps = 11/265 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                       +    +  V  S   S+  S     +   N       +           
Sbjct: 774  RMQSADLNHWFVRNSNDEMVPFSSFASSSWSYGSPLLERYNGSSSLEVVGDPAPGVSSGT 833

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A   V  ++K+    I    T Q+ ++        ++    + V+   + +     +   
Sbjct: 834  AMDAVEAIIKQLPEGIGYEWTGQSYQLRLSGAQAPMLYA--ISVLFVFLCLA---ALYES 888

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W      +  + L +   +    L G+  ++     +LT +G +  + +++ +  +    
Sbjct: 889  WSVPFSVMLVVPLGVVGAVLATRLSGLSNDVYFQVGLLTTVGLAAKNAILIVEFAK---H 945

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
            L     S  +    +  + L   + TS+A    VLP+A+    G +   +    +  G+ 
Sbjct: 946  LQEQGKSLHEATLIAARQRLRPILMTSLAFMFGVLPLALSTGAGSAGRNAIGTGVLGGMF 1005

Query: 807  VAASSSIFIAAPILLFIYDWRAKNA 831
             A    IF+     + +    +++A
Sbjct: 1006 SATVLGIFLVPLFFVEVRRRFSRSA 1030


>gi|299770213|ref|YP_003732239.1| Multidrug resistance protein mexB (Multidrug-efflux transporter
           mexB) [Acinetobacter sp. DR1]
 gi|298700301|gb|ADI90866.1| Multidrug resistance protein mexB (Multidrug-efflux transporter
           mexB) [Acinetobacter sp. DR1]
          Length = 1053

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/576 (12%), Positives = 165/576 (28%), Gaps = 42/576 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             ++ ++   I   G L  L        ++R+P+  P               + +  +  
Sbjct: 10  PIFVSVIAITILIFGFLATL-----AMPVERYPNLAPPG-------------VTVVANYR 51

Query: 64  DFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                 ++      L   +K          +S     + I + F      +    +V   
Sbjct: 52  GAAADTVEESVTQILEQQIKGLDNLLYFTSYSESSGTSSIDIHFKIGTDIDKAQLQVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           + G  ++L  + ++  +         +++     +   +  I+ S  ++      +   +
Sbjct: 112 INGALNRLPEEVQRQGVNIWKTTGDMLLIVGLYDETGKTSNIDLSDYMVNHFEQPLSQLQ 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    +P++LR      + +       N        G         
Sbjct: 172 GIGEVNVFGS-SYAMRIWLNPNQLRNYQLVPSDIEKALEDYNTQIAAGSIGAMPSAADQN 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V+    +                      +    +     +      +        
Sbjct: 231 IYAKVKAGSRL-------------KTIDDFKSVVVKANVDGSLVYLKDVARVELGAENYE 277

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L          S     +   T        A L          +    N      S
Sbjct: 278 SINTLNGYPSAGLGISLSPDANAIETSALIKEKMAQLSQHLPAGYKVVYPRDNTPFIEES 337

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV+IV+++ +   +  L+   ++ + +  T  +L L G ++   ++ 
Sbjct: 338 IKQVIITLLEAIVLVVIVMYLFLQNWRATLIPTITVPIVISGTFVVLYLFGMSINTLTLF 397

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IGL VD  I+V E +     + Q SV  +  M        +    +      + +
Sbjct: 398 ALVLAIGLLVDDTIVVVENVERLMHEQQLSVREACLMSMQEISGALVGITLVLTAVFIPM 457

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            FF    G   R F+IT+  ++L+S+F A++I  AM   +   K  K      +    L 
Sbjct: 458 AFFSGSTGMIYRQFSITLAAAMLLSLFVAMTITPAMCAVL-LKKHNKKPKWGQMLELALQ 516

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
               A  F+        +     +  I ++      
Sbjct: 517 KVRSAFSFLSVFLIKFKVFSSLLVVGIAVILFIIYR 552



 Score = 90.9 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 99/248 (39%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  +            L        +++  + +++    ++++ +P 
Sbjct: 261 VYLKDVARVELGAENYESINTLNGYPSAGLGISLSPDANAIETSALIKEKMAQLSQHLPA 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                          E I++ I+ ++ + + ++I +++  + W   L    T+ + I+ T
Sbjct: 321 GYKVVYPRDNTPFIEESIKQVIITLLEAIVLVVIVMYLFLQNWRATLIPTITVPIVISGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                LFG+  N   + A++  IG  V+D +VV + +     ++   +S R+    S+ E
Sbjct: 381 FVVLYLFGMSINTLTLFALVLAIGLLVDDTIVVVENV--ERLMHEQQLSVREACLMSMQE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA + GS       F+I +A  ++++   ++ I   +   + 
Sbjct: 439 ISGALVGITLVLTAVFIPMAFFSGSTGMIYRQFSITLAAAMLLSLFVAMTITPAMCAVLL 498

Query: 825 DWRAKNAR 832
               K  +
Sbjct: 499 KKHNKKPK 506



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 7/148 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            R+ I   +IS + + + +   ++ W      +  L L IT T+ F  +F +  ++    A
Sbjct: 864  RQAIYLYLISILFIFLCLAALYESWKVPFIILLGLPLGITGTIIFAWIFKLPNDVYFQIA 923

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +LT IG S  + +++ +      +      S  D   +++   L   + TS+A    V+P
Sbjct: 924  LLTGIGLSCKNAILIVEFA---TQALKQGKSKIDAASEALKLRLRPILMTSLAFGAGVVP 980

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAAS 810
            +      G +      + +   +V    
Sbjct: 981  LIFATGAGAASRYEIGMSVFGSVVFGTL 1008


>gi|259415595|ref|ZP_05739516.1| acriflavine resistance protein B [Silicibacter sp. TrichCH4B]
 gi|259348825|gb|EEW60587.1| acriflavine resistance protein B [Silicibacter sp. TrichCH4B]
          Length = 1036

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/574 (12%), Positives = 163/574 (28%), Gaps = 32/574 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  M   IG   A         + ++P   P                     
Sbjct: 7   RRPVFAWVLALMTMLIGAWSAF-----TLPVAQYPDIAPTTVR---------VSASYNGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + L           +  + I ++F +S    +  ++V   +  
Sbjct: 53  TAEAVENSVTRVIEDAMTGLDGMIYMTARSSEGSSSIQITFDESVEPIDAQNEVQTKVSQ 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    +   +  +      +++     D      ++    +  Q    I  +E   
Sbjct: 113 VESQLPTAVRSRGVTVSRSSSSILLVGAIVADDSRYSTVQLGNILSEQVEGPIQRTEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP  L +   T   +       N +      G +          
Sbjct: 173 GVSIFGSG-YAMRIWLDPIALARFQLTPQDVVGAVEEQNTTVSVGSLGSQPTLAGQQFNA 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++ +              +    +   +             +           
Sbjct: 232 TITAQSQMTTVD-------------EFEQILLKSDEDGGAVRLADVARVEIGQESYGGDS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +         +     +   T          L           +          S   
Sbjct: 279 RFSGQNATGFGVNLATGANAVDTAAAVRATLDRLAPSLPDGVRFEIAYDTSPFVELSIEQ 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +VL + +   +  L+   ++ + ++ T A+L L G ++   ++  +V
Sbjct: 339 VYHTLIEAVVLVFLVLLLFLQSWRATLIPLIAVPVVLLGTFAVLQLGGFSINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      +  +   +      +  S +   N+      + + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERLMEDEGLTALEATRKSMGQITSALLGINVVLAAVFLPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F++TM  ++ +S+  AI +   M   +++ K  +           L+   
Sbjct: 459 GGSTGVIYRQFSVTMVTAMTLSLCVAIILSPPMSARLLKPKTGQPRFAPFRWFNALVARA 518

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
           I       +       ++       L+  + +N 
Sbjct: 519 ITGYGAGVKGTLRLPFLMPLALVAVLIGAYMVNN 552



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T     L G   N   + A++  IG  V+D +VV + +    
Sbjct: 360 SWRATLIPLIAVPVVLLGTFAVLQLGGFSINTLTMFAMVLAIGLLVDDAIVVVENV--ER 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    ++  +   KS+ +     +  ++      LPMA +GGS       F++ M   +
Sbjct: 418 LMEDEGLTALEATRKSMGQITSALLGINVVLAAVFLPMAFFGGSTGVIYRQFSVTMVTAM 477

Query: 806 VVAASSSIFIAAPI 819
            ++   +I ++ P+
Sbjct: 478 TLSLCVAIILSPPM 491



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 65/163 (39%), Gaps = 6/163 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            I+  I + +  L    +   W   L  +  + + I   L    +FG   ++     +LT 
Sbjct: 868  ILYAISALVVFLALAALYESWSIPLAVMLAVPVGILGALFSAWIFGQSNDVYFKVGMLTT 927

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG +  + +++ +   ++++     +   +   ++    L   + T++   + VLP+A+ 
Sbjct: 928  IGLAARNAILIVE-FAEDLR--RDGMRIAEAAIEAARLRLRPILMTALTFILGVLPLAIA 984

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G +   +  I +  G++ +    IF+     + I     K
Sbjct: 985  TGAGAASQNAIGIGVIGGMLASTFLGIFMVPAFYVLIMRVTRK 1027


>gi|194365346|ref|YP_002027956.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Stenotrophomonas maltophilia R551-3]
 gi|194348150|gb|ACF51273.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Stenotrophomonas maltophilia R551-3]
          Length = 1056

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 159/573 (27%), Gaps = 37/573 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P + +            V     
Sbjct: 10  RPIFAAVLSIVIFAAGLITI-----PILPISEYPEVVPPSVVVR---------TVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  EG+         + +   T++F      +  A KV   +
Sbjct: 56  PKVIAETVATPLEEAINGV--EGMMYLKSVAGSDGVLQMTVTFRPGTDPDAAAVKVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +    +++      Q     +           D +     
Sbjct: 114 AQAQARLPEDVRRQGVTTQKQSPTFLMVVHLTSPQGKYDTLYLRNYARLHVKDALARIPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP ++     T + +       N        G   L +S   
Sbjct: 174 VGDAQIFGGGDYAMRAWLDPDKVASRGLTASDVVRAMREQNVQVSAGQLGAEPLPNSQFL 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             +                        +    +    +            +         
Sbjct: 234 TLINAQG--------------RLKSEKEFGDIVLKSGVDGEIVRLADVARLELGAGDYTL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +        ++                     S 
Sbjct: 280 RSQLDGKNAVGIGIFQSPGANALEIRDQVISTMDEMQKTMPADVKYEAVYDTTIFVRDSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   S+ G
Sbjct: 340 KAVVSTLLEAIALVVLVVILFLQTWRASIIPLIAVPVSVVGTFAALYLLGFSINTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 400 LVLAIGIVVDDAIVVVENVERNIEEGLSPTAAAHQAMREVSGPIVAIALVLCAVFVPMAF 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIP 535
                G   + FA+T+ +S +IS   ++++  A+    +  +   K      + R F   
Sbjct: 460 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAARLLKPHDAAKDAPTRIIDRLFGWV 519

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                +F ++        +   +     +F   
Sbjct: 520 FRPFNRFFKSSSEKYERGVSKILGRRGAVFVVY 552



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 64/185 (34%), Gaps = 7/185 (3%)

Query: 651  IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
            +               +   +   ++ +   + +   ++ W   L  I  + + +   L 
Sbjct: 861  MTTEWTDLSYQQATQGKAAFIVFPVAIMLAFLVLAALYESWSLPLAVILIVPMTLLSALF 920

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               L G + N+     ++ L+G +  + +++ +  R+   L        +   ++    L
Sbjct: 921  GVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFARE---LEMGGKGIVESALEACRLRL 977

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               V TS+A     +P+ +    G  V     I +  G++      +F+     + +  +
Sbjct: 978  RPIVMTSIAFIAGTVPLVLSHGAGAEVRSVTGITVFAGMLGVTLFGLFLTPVFYVALRKF 1037

Query: 827  RAKNA 831
              +N 
Sbjct: 1038 VTRNG 1042



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 364 WRASIIPLIAVPVSVVGTFAALYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIE 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  V  ++      +PMA   G        FA+ +A   V
Sbjct: 424 E---GLSPTAAAHQAMREVSGPIVAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTV 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 ISAINSLTLSPALAARLLK 499


>gi|46203012|ref|ZP_00052225.2| COG0341: Preprotein translocase subunit SecF [Magnetospirillum
           magnetotacticum MS-1]
          Length = 242

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/158 (40%), Positives = 108/158 (68%), Gaps = 1/158 (0%)

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           G +G ++S + +L+Y+W RF+   ALGAI   + DI  T+G F +  IEFN+T++AA+LT
Sbjct: 68  GTIGFVLSVLPVLLYLWFRFERELALGAIVGTLHDIVLTVGVFIITRIEFNMTSIAAILT 127

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           ++GYS+N+ VVV+DR R+ M+ Y  +I   +L++ SIN T+ R+V TS++  +S++ + +
Sbjct: 128 IVGYSLNETVVVFDRTRELMRRY-KTIPVVELLNLSINSTMSRTVMTSLSTTLSLVALVL 186

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +GG  I  FA+ M  G+V+   S+IF++ P L++I   
Sbjct: 187 FGGEAIKGFAVVMLCGVVICTYSAIFVSTPALIYIGLR 224


>gi|296159371|ref|ZP_06842196.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. Ch1-1]
 gi|295890355|gb|EFG70148.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. Ch1-1]
          Length = 1068

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/521 (13%), Positives = 146/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   +   G L       PQ  + ++P   P               +V+    
Sbjct: 8   RPVFAWIVALALVVAGALAI-----PQLPVAQYPRLAPP-------------RVVISATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L            S    + +I  +FA     +     +  
Sbjct: 50  PGASTEVVDANVGSIIEESLDGADNMLYYETTSDSLGELEIDATFAPGTNPDLALVDIQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L     +  +         ++L           +++ S  + R  + ++  +
Sbjct: 110 RLKQVEPRLPQQVVQQGISVFKAANTFLMLVALTSTDGTRDSVQLSDYLSRYVLRELKRA 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP +LR+     A+++      N +      G        
Sbjct: 170 PGVGSAQLWDA-DEALRIWLDPMKLREYGLGAAEVNAAIAAQNATVTAGTLGDAPFVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K ++                 +    +                 +       
Sbjct: 229 QLTASVSVKGQL-------------ISPAEFGQIVLKARPDGSAVRLRDVARVEVGRDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T        A L  G        +   N      
Sbjct: 276 SFYSRLNGRAAATVGIQLGPRGNALETSNAIRARLAELSKGLPSGVSIEIPFDNAHFVQI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T A    LV  V+++ +   ++ LV    I + ++     +   G ++ + ++
Sbjct: 336 AIHEVLVTLAEAVVLVFFVMWLFLRDLRYTLVPTVVIPVTLMGAFLAMYACGLSINVFTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +     S+    I           V 
Sbjct: 396 FGLVLAIGILVDDAIVVVESVHRVMEEEGLPPREATRKAMSQIGGAIVGVTAVLTAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + FF    GG  R FA+ M  S+L+S F A+S+  A+   +
Sbjct: 456 MAFFPGGVGGIYRQFAVAMIASMLVSSFMALSLTPALCANL 496



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 76/197 (38%), Gaps = 12/197 (6%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
             +  +     ++++ +P               +  I + +V +  + + +   +W+  +
Sbjct: 301 ETSNAIRARLAELSKGLPSGVSIEIPFDNAHFVQIAIHEVLVTLAEAVVLVFFVMWLFLR 360

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMR 745
              + L     + + +          G+  N+  +  ++  IG  V+D +VV +   R+ 
Sbjct: 361 DLRYTLVPTVVIPVTLMGAFLAMYACGLSINVFTLFGLVLAIGILVDDAIVVVESVHRVM 420

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
           +        +  R+   K++++  G  V  +       +PMA + G V      FA+ M 
Sbjct: 421 EE-----EGLPPREATRKAMSQIGGAIVGVTAVLTAVFVPMAFFPGGVGGIYRQFAVAMI 475

Query: 803 FGIVVAASSSIFIAAPI 819
             ++V++  ++ +   +
Sbjct: 476 ASMLVSSFMALSLTPAL 492



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 62/164 (37%), Gaps = 11/164 (6%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S +A+ + +   ++ W   L  +  + L +   +    L G+  ++     ++T+IG
Sbjct: 879  IGLSLLAVFMALAALYESWTIPLAVLMVVPLGVIGAVAAVLLRGMPNDVYFKVGMITVIG 938

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++    R    LY   +     + ++        V TS A  + V+P+ V   
Sbjct: 939  LAAKNAILIVQFARD---LYQRGLPLTRAVTEAAGARFRPIVMTSAAFLLGVVPLVVSSG 995

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA----PILLFIYDWRA 828
             G     S    +  G++ A    +  A      +    +  R 
Sbjct: 996  AGAESRRSIGTGVFGGVLAATLFGLVFAPVAFHAVASLTHGRRR 1039


>gi|239502921|ref|ZP_04662231.1| hypothetical protein AbauAB_11464 [Acinetobacter baumannii AB900]
          Length = 1059

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/503 (10%), Positives = 130/503 (25%), Gaps = 30/503 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPSNSPLQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 +    +      
Sbjct: 236 NAQGRL---------------TTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIEAGLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMT 460

Query: 482 GGAVRGFAITMGLSILISMFTAI 504
           G   + +        + ++ +A 
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAF 483



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 117/395 (29%), Gaps = 18/395 (4%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
            ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 652  AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 711

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   +  M           ++D++ +           +      + G      F+   
Sbjct: 712  AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 771

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +          L +         V  S+L ++                   
Sbjct: 772  RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 831

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 832  INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 890

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++     L  I  + + I   L    L   + N+     ++ L+G +  + ++
Sbjct: 891  FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTAGDNNIFTQIGLMVLVGLACKNAIL 950

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  R+   L     +      ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 951  IVEFARE---LEMQGATAFRAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 1007

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              + + FG++      +F+     + I    +K+ 
Sbjct: 1008 MGVAVFFGMIGVTFFGLFLTPAFYVLIRTLNSKHK 1042



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 363 WRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                ++ R+   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 423 A---GLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479

Query: 807 VAASSS 812
           ++A +S
Sbjct: 480 ISAFNS 485


>gi|118474846|ref|YP_891328.1| transmembrane efflux protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414072|gb|ABK82492.1| transmembrane efflux protein [Campylobacter fetus subsp. fetus
           82-40]
 gi|225423395|gb|ACN91216.1| CmeB [Campylobacter fetus]
          Length = 1048

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/573 (12%), Positives = 166/573 (28%), Gaps = 41/573 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +      L  S ++ +P   P               ++++ + 
Sbjct: 9   RPVFACVLSIIIVIAGYI-----GLKSSPIEEYPQLTPP-------------QIMVQANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L + +        +   S       +++ F      +     V+ 
Sbjct: 51  SGADAQTIADTIAAPLENAINGVQDMIYMQSTSSSAGTMSLSVYFKIGTNPQTATVNVSN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L  + K+  +         + +             E S  I     D I   
Sbjct: 111 RVTPALSLLPEEVKRVGVTVRERSSSILNVLSFYDPSGKMSDTEISNYININVADAIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +     P  L++   TT  +       N+       G +  + S+
Sbjct: 171 PGVGDAVVIGNKDYSMRVWIKPDLLKKYSLTTTDVINSIKEQNSQYATGKIGEQPTQTSN 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y ++ +  +                 +    I                 +       
Sbjct: 231 PYVYAIKPEGRL-------------KNVSEFENIIIKANNKGNIIKLKDVATVELGAQNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +    +   +   ++  +   T +        L+A        IV          
Sbjct: 278 TFAGRINGATMIPMLVFLQSGANALNTADAIVKRVDELKASFPGDLTYIVGYDTTEFVKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV++M +   +  ++   ++ ++++     L  +G ++ L ++
Sbjct: 338 SIDEVIKTFIEAMILVVIVMYMFLGNVRATIIPMLAVPVSILGAFGGLYAMGFSINLITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             ++L IG+ VD  I+V E +     +  +      ++          I    + + +  
Sbjct: 398 FALILAIGIVVDDAIIVIENVERILHEEPNLTVKEATIKAMSEIVAPVISIVLVLSAVFI 457

Query: 475 VVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V F  G  G   R FA+T+ +S+ IS   A+++  A+   I+R K+            F
Sbjct: 458 PVSFMEGFVGVIQRQFALTLVVSVCISGLVALTLTPALCAMILRKKENPPFWFVRKFNEF 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
                       A+     I  L  +  I  + 
Sbjct: 518 FDFSTKIFTAGVAKILKHVIMSLICVGIIIFMM 550



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 81/212 (38%), Gaps = 15/212 (7%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A  + ++ +K      +      +T         E+I+  I  +I+  I M +++ 
Sbjct: 303 NTADAIVKRVDELKASFPGDLTYIVGYDTTEFVKVSIDEVIKTFIEAMILVVIVMYMFLG 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +  +  + + I    G     G   NL  + A++  IG  V+D ++V + + 
Sbjct: 363 ---NVRATIIPMLAVPVSILGAFGGLYAMGFSINLITLFALILAIGIVVDDAIIVIENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-------WGGSVIGSFA 798
           + +     +++ ++   K+++E +   +    +  + +  + +       + G +   FA
Sbjct: 419 ERILHEEPNLTVKEATIKAMSEIVAPVI----SIVLVLSAVFIPVSFMEGFVGVIQRQFA 474

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           + +   + ++   ++ +   +   I   +   
Sbjct: 475 LTLVVSVCISGLVALTLTPALCAMILRKKENP 506



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/381 (12%), Positives = 110/381 (28%), Gaps = 15/381 (3%)

Query: 461  STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              I   +IT           G    +  A    +    +   A+++VR  +        +
Sbjct: 668  PPIMGLSITGGFELFAQNTEGKNYSQIEADMQKVVAKANAHPALNMVRTTLDTNFPQYDL 727

Query: 521  KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
                         I D           + V    +        + +              
Sbjct: 728  TLDKEKIKMMGINISDVFNTLSSTIGQYYVNDFNMLGKTFKVNIRSMSEYRDSPEDLRSL 787

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                 +  +       +L+     D   +        ++        S    + +E + K
Sbjct: 788  YVRSQDGKMVPLDSVVSLKRSLGPDNVDRFNAFPAAKIMGEPKPGYTSGDAIKAIEQIIK 847

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
            +                          KG    +   I + + +  ++ +W   L  +T 
Sbjct: 848  EELPTGYDIGWSG----SAYQEVASTGKGAQAFVFGMIFVFLILAAQYERWLMPLAVVTA 903

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +   +  +L F    G+  ++     +L LIG +  + +++ +     M+ +    S ++
Sbjct: 904  VPFSVFGSLLFTWTRGLSNDVYFQIGLLLLIGLAAKNAILIVEFA---MQEHLAGKSIKE 960

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +        V TS+A  + VLPM V    G +   +    +  G++ A++ +IF  
Sbjct: 961  AAINAARMRFRPIVMTSLAFTLGVLPMVVATGAGAASRHALGTGVIGGMIAASTIAIFFV 1020

Query: 817  APILLFIYDWR----AKNARI 833
                  +  +      K  +I
Sbjct: 1021 PLFFYILESFNLWLDKKRGKI 1041


>gi|225874881|ref|YP_002756340.1| AcrB/AcrD/AcrF family protein [Acidobacterium capsulatum ATCC
           51196]
 gi|225792324|gb|ACO32414.1| AcrB/AcrD/AcrF family protein [Acidobacterium capsulatum ATCC
           51196]
          Length = 1114

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/544 (11%), Positives = 154/544 (28%), Gaps = 42/544 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                 +L + I  +G++        Q  +   P                   ++     
Sbjct: 10  RPIATSLLMAAILLVGIVA-----YRQLPISALPQVDYPT-----------IQVLTFYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D     +    +     +        +     + I L F+     +    +V   + 
Sbjct: 54  ASPDVTASTVTAPLERQFGEMPGLSQMTSTSAGGVSVIVLQFSLQLNIDVAEQEVQAAIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S L  +     +   T    + +L+   +        +    I  + + ++      
Sbjct: 114 AAQSLLPANLPAPPVYNKTNPADAPILT-MGVTSNTMQLSQVEDLIDTRLVPKLAQISGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  + +P++L     +   +       + +     F    L     + 
Sbjct: 173 GMVTISGGQRPAVRIQVNPTKLAGYGISLEAVRTALTQASVNAAKGNFDGPRLDYQIDSN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + +  E                      D+          F      +   +      
Sbjct: 233 DQLTEANE--------------------YNDVVIAYQNGAPVFLKNVATVINGVENENQA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +   +    + +       L A                +   S +
Sbjct: 273 AWMNRQPAIILNIQRQPGANTISVVRSIKEALPQLEATLPAGIQLHQLTDLTTSIQASVN 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +  GLV++V+F+ +      ++   ++ L+++ T   + LLG +L   S+  +
Sbjct: 333 DVEFELLLTIGLVVMVIFLFLRSLYATIIPSVAVPLSLVGTFGAMYLLGYSLDNLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F 
Sbjct: 393 TISTGFVVDDAIVMIENISRYLEEGYSPMEAAFKGSGQIGFTILSLTVSLIAVLIPLLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FA+T+ ++I+IS   ++++   M   I+R+           +   +    
Sbjct: 453 GDVVGRLFREFAVTLAVTIIISAVVSLTLTPMMCSRILRHDPKAQQGRFYQASERVFNGM 512

Query: 538 IAIQ 541
           I   
Sbjct: 513 IGFY 516



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 93/261 (35%), Gaps = 12/261 (4%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +    N  +         V+A +      +++    +   +   Q     +   + L  Q
Sbjct: 227 YQIDSNDQLTEANEYNDVVIAYQNGAPVFLKNVATVINGVENENQAAWMNRQPAIILNIQ 286

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIA 679
                    V+  +K+ + ++               ++  +          + + I  + 
Sbjct: 287 RQPGANTISVVRSIKEALPQLEATLPAGIQLHQLTDLTTSIQASVNDVEFELLLTIGLVV 346

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           M+I++++R   Y  +     + L +  T G   L G   +  ++ A+    G+ V+D +V
Sbjct: 347 MVIFLFLR-SLYATIIPSVAVPLSLVGTFGAMYLLGYSLDNLSLMALTISTGFVVDDAIV 405

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGS 796
           + + +    +      S  +   K   +     +  +++    ++P+   G   G +   
Sbjct: 406 MIENI---SRYLEEGYSPMEAAFKGSGQIGFTILSLTVSLIAVLIPLLFMGDVVGRLFRE 462

Query: 797 FAIPMAFGIVVAASSSIFIAA 817
           FA+ +A  I+++A  S+ +  
Sbjct: 463 FAVTLAVTIIISAVVSLTLTP 483



 Score = 38.9 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 113/293 (38%), Gaps = 6/293 (2%)

Query: 544  RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
            R       +S+  ++ S   L  +G +      GG+          + +V  S    +  
Sbjct: 808  RYTPSSGVMSVPGNLISTSGLTVNGSSLSSGTYGGVTPNTTTQAVSNSAVPLSAFTRISY 867

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            G          +   V + +  G   A    +  V K  +++   +++Q+      +  +
Sbjct: 868  GTELLSINHQGQFPSVTVSFNLGPHAALGNAINSVDKVASQMGFPASLQHGWEGTAQAFK 927

Query: 664  ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
              +    + ++ + + + I + + ++ +   +  ++TL       L    LFG   N+ A
Sbjct: 928  SSLSNEALLILAALVVVYIVLGVLYESFIHPITILSTLPSAGVGALLALFLFGQNLNVVA 987

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
            +  ++ LIG    + +++ D   +        ++  + I ++        + T+MAA + 
Sbjct: 988  IIGIILLIGIVQKNGILIVDFALE--AERVRGLNATEAIYEACLLRFRPIMMTTMAALLG 1045

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             LP+A+   +G  +     I M  G++++   +++    I +F  +   +  R
Sbjct: 1046 GLPLALGTGYGSELRRPLGIAMVGGLLLSQVLTLYTTPVIYIFFDNLGRRLGR 1098


>gi|42526195|ref|NP_971293.1| preprotein translocase subunit SecF [Treponema denticola ATCC
           35405]
 gi|41816307|gb|AAS11174.1| protein-export membrane protein SecF [Treponema denticola ATCC
           35405]
          Length = 413

 Score =  167 bits (421), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 125/244 (51%), Gaps = 3/244 (1%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +P++   VR  L S+    +       ++ F +RL        A   +  ++   +    
Sbjct: 151 KPINTDEVRHALSSIPSVSVQQLGTPEDRYFQIRLADDGKYEDANKELRSIINTALNAAY 210

Query: 647 --PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                 + +T+ VG + S  L ++ I+ V  + + + IY   RF+W F+L AI  L+ D 
Sbjct: 211 GIENIAVISTDFVGSRFSSSLAQQAILLVGGALVLIFIYAMFRFQWNFSLAAIIALLHDT 270

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              + F +   +EFN T +AA+LT+IGYS+ND +V++DR+R+ + L    +  ++++DK+
Sbjct: 271 LIMIMFISWTQMEFNSTTIAAILTIIGYSINDTIVIFDRIREKIHLEPK-LECKEILDKA 329

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + E   R++ T++   ++V+ + ++    +  FA+ +  G++    SSI++A+  +    
Sbjct: 330 LTEVFTRTIITTLTTMVAVVALYLFTTDSMKDFALALIVGLISGTYSSIYVASYFIALTS 389

Query: 825 DWRA 828
             + 
Sbjct: 390 KGKK 393


>gi|268609602|ref|ZP_06143329.1| SecD/SecF family protein-export membrane protein [Ruminococcus
           flavefaciens FD-1]
          Length = 321

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 140/320 (43%), Gaps = 12/320 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             N      +        F   +   +G+ I   +  +  +   G++  I+FKGG  +  
Sbjct: 3   KKNTQKETPVTLPQKVYNFCAKKKLILGVVIAVCVILLAGIIIRGVHLAIEFKGGTLITY 62

Query: 584 LANRPVDLSVVRSNLESLQIGD---ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                ++ + V S ++ +   +      ++ D     +           A  +       
Sbjct: 63  TYQGEINENEVGSAIKEIVGSNVVVRKGESLDSGGKQITISFVSNEGLTADRQTELDTAL 122

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGA 696
           K         + ++  V P   RE + K  + V+ +A  ++IYI IRF+    W   + +
Sbjct: 123 KEKFADNSLELYDSNDVSPSSGREFLLKCFIAVLFAAFIVIIYIAIRFRNIGGWSAGVCS 182

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           I  L +DI        + G + +   VA +LT++GYS+N+ +V+YDR+R+N KL     +
Sbjct: 183 IFALCMDILVAFTTTIVCGFDIDSNIVAVILTILGYSINNTIVIYDRIRENRKLMPK-AT 241

Query: 757 FRDLIDKSINETLGRSVYTSMAA----FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
             +LI+ S  ++L RS+ TS+       I  + + V G + + SF++P+ FG++    SS
Sbjct: 242 LNELINVSCTQSLTRSIRTSVTTIGTMLIVTIVVLVKGYTSLLSFSVPLMFGLISGTFSS 301

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           +F+A     +    +AK  +
Sbjct: 302 LFVAPVTWSWWKGKQAKKNK 321


>gi|170732947|ref|YP_001764894.1| multidrug efflux protein [Burkholderia cenocepacia MC0-3]
 gi|169816189|gb|ACA90772.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia cenocepacia MC0-3]
          Length = 1046

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/612 (11%), Positives = 168/612 (27%), Gaps = 41/612 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GL            + ++P   P              +       
Sbjct: 8   RPIFAWVIAIFIMLGGLFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSATSSAGAASLYLTFKQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +++L    +++ +      +   ++     D      ++         +  +   E   +
Sbjct: 114 DARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTDVQLGEYASANVVQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKLAGHGLTASDIASAVRAHNARVTIGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +      F      I            
Sbjct: 233 VFADAPL-------------KTPADFGAIALRAQPDGSALFLRDVARIEFGGNDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L     P     +          S +  
Sbjct: 280 VNGKVATGMGIKLAPGSNAVSTEKRVRATMDDLSRYFPPGVKYQIPYETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+    + + +  T  ++   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  + + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEGLAPYDATVKAMRQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+++ +SI  S F A+S+  A+   +          +       +     
Sbjct: 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVSGDHHEKRGFFGGFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   W V    L +  ++ L          + +G   + V+  +  
Sbjct: 520 ATQRYATRVGTMLKKPVRWLVVYGALTAAAALMLTQLPTAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESL 601
            L+    ++ ++
Sbjct: 580 PLAETMQSVRAV 591



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 73/202 (36%), Gaps = 8/202 (3%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                   ++ + +     V       T         +++   I   ++  + M +++  
Sbjct: 301 TEKRVRATMDDLSRYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ- 359

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                  L     + + +  T G     G   N+  +  ++  IG  V+D +VV + +  
Sbjct: 360 --NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENV-- 415

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    ++  D   K++ +  G  V  ++      +PMA +GG+V      FA+ +A 
Sbjct: 416 ERLMVEEGLAPYDATVKAMRQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAV 475

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            I  +A  ++ +   +   +  
Sbjct: 476 SIGFSAFLALSLTPALCATLLK 497



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 66/177 (37%), Gaps = 9/177 (5%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFF 711
                 +   E +      ++ +   +++++ +      W      +  + L +   +   
Sbjct: 851  YAWSGQSFEERLSGAQAPMLFALSVLVVFLALAALYESWSIPFAVMLVVPLGVIGAVLGV 910

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             L  +  ++     ++  IG S  + +++ +  +    L    +S  D   ++    L  
Sbjct: 911  TLRAMPNDIYFKVGLIATIGLSAKNAILIVEVAKD---LVAQRMSLVDAALEAARLRLRP 967

Query: 772  SVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             V TS+A  + VLP+A   G+  G+       +  G++ A   ++F+     + +  
Sbjct: 968  IVMTSLAFGVGVLPLAFASGAASGAQMAIGTGVLGGVITATVLAVFLVPLFFVIVGR 1024


>gi|289772772|ref|ZP_06532150.1| preprotein translocase, SecD subunit [Streptomyces lividans TK24]
 gi|289702971|gb|EFD70400.1| preprotein translocase, SecD subunit [Streptomyces lividans TK24]
          Length = 572

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 100/518 (19%), Positives = 186/518 (35%), Gaps = 42/518 (8%)

Query: 45  SLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-I 98
            LG+DL GG+ + L    +           +    + +   +   G+    ++   ++ I
Sbjct: 16  RLGIDLAGGTSITLRAVPEAGQESAINKTNMDTAVEIMNRRVNGLGVSEAEVQTQGDRNI 75

Query: 99  TLSFADSRFKENIADKVTLFLQG-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
            ++       +    +V    +      L  +        T     +   S    D+   
Sbjct: 76  IVNIPKGTNSKEARQQVGTTAKLYFRPVLATELSGANATGTPSASETGGASDKATDKATD 135

Query: 158 HAIEQSMEII--------------------RQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
            A +                          R   D +    S                  
Sbjct: 136 KATDGDKATDGDKASGTPSDSASASATSQGRAASDALKADPSPSATSSDGASPSPSASAS 195

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGI 252
                 +L    A +                                Q  +     + G 
Sbjct: 196 GDDATAKLQQQYAALDCTDKNARAKAGDGAKPDEQTVACGQNSQGQWQKYILGAAAVDGT 255

Query: 253 HL-NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL-----DGRVLTAP 306
            +                V + F + G+++F ++T                 D  V++ P
Sbjct: 256 EVDEAEAVYNTQTAAGWTVTMKFTDKGSKKFADITGKLAQNQSPQNQFAIVLDNEVVSDP 315

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            ++QA+  G A+ISG+F  E A  LA ML  G+LP+         V A LG + +  G  
Sbjct: 316 YVSQALTGGNAEISGSFDQEEAQSLANMLSYGALPLTFKEDSVTTVTAALGGEQLKAGLI 375

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIAGIVL 422
           A   GL L+VL+++  Y     +A  S+ ++  LT  +++LLG T+     LP++ G ++
Sbjct: 376 AGAIGLALVVLYLLFYYRGLSFIAVCSLLVSAGLTYVIMALLGPTIGFALNLPAVCGAIV 435

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+  DS I+  ER+R+E R+ +++  +++  + RA  TI  S+  + +A  VLF    
Sbjct: 436 AIGITADSFIVYFERVRDEIREGRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTV 495

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G V+GFA T+GL+ L+ +       + ++  + R K  
Sbjct: 496 GKVQGFAFTLGLTTLLDVVVVFLFTKPLLTLMARRKFF 533



 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 83/248 (33%), Gaps = 8/248 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                +  +    N  ++ + +    +    +          G    +            
Sbjct: 288 DITGKLAQNQSPQNQFAIVLDNEVVSDPYVSQALTGGNAEISGSFDQEEAQSLANMLSYG 347

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +       +   V   +  E ++ G++   I    +++Y+   ++   +  A+ +L++ 
Sbjct: 348 ALPLTFKEDSVTTVTAALGGEQLKAGLIAGAIGLALVVLYLLFYYR-GLSFIAVCSLLVS 406

Query: 704 ITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
              T    AL G       NL AV   +  IG + +  +V ++R+R  ++      + R 
Sbjct: 407 AGLTYVIMALLGPTIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIRE---GRTLRP 463

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++++        + +   +F++   + +     +  FA  +    ++          P+
Sbjct: 464 AVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPL 523

Query: 820 LLFIYDWR 827
           L  +   +
Sbjct: 524 LTLMARRK 531


>gi|330466915|ref|YP_004404658.1| protein-export membrane protein secf [Verrucosispora maris
           AB-18-032]
 gi|328809886|gb|AEB44058.1| protein-export membrane protein secf [Verrucosispora maris
           AB-18-032]
          Length = 398

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 127/293 (43%), Gaps = 7/293 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R      + +  + ++  +   G N GI+F GG    +  +         +  ESL  
Sbjct: 22  GRRKMWFTAAAVLVLIALASILIKGFNPGIEFAGGNSFQIPTSVGTMQQAEETAGESLST 81

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                                    + Q++   +           +   +   V      
Sbjct: 82  AGAHVVTAQQVGGAGGSFYELRTTQLDQSQAETVRLDMAERFGIDANDISANRVSEAWGS 141

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           ++  + ++G++I    +  Y+ +RF+W  A+ AI +L++++  T G +++ G E   + +
Sbjct: 142 QVTNRALLGLVIFIALVTAYLVLRFEWQMAVAAIFSLVMNLVLTAGIYSIVGFEVTPSTI 201

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSMAAFI 781
              LT++G+++ D VVV+D++++N +  T   + ++ +  + ++N++L RSV TS+ A +
Sbjct: 202 IGFLTILGFALYDVVVVFDKVQENARGITANNNQTYGEAANLAVNQSLMRSVNTSVVALL 261

Query: 782 SVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            V  +        G   +    + +  G+ +A  +SI +A P+L+ + +   +
Sbjct: 262 PVGGILFIGAGLLGAGTLKDLGLVLFVGMAMAFITSITLATPLLVVLKNRDPR 314


>gi|315604280|ref|ZP_07879346.1| protein-export membrane protein SecF [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313986|gb|EFU62037.1| protein-export membrane protein SecF [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 362

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/293 (23%), Positives = 130/293 (44%), Gaps = 12/293 (4%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R   VG++    +    L+   GLN  I+F GG Q  V        S     +    + 
Sbjct: 23  NRRVFVGLAAAVIVLGFALVGIMGLNRSIEFTGGSQFDVAHVSDQSESFAARAVSDTGLV 82

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           + + +      +  VR+Q    DS     + E +           +   +  +GP     
Sbjct: 83  EGAPKVTRVGSD-SVRIQTTSLDSGQTATMREALAGAY---GVDVSQVQSSSIGPSWGSS 138

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           +  K    ++I    + + + + F+ W  A  A+  L+ DI  T+G FA+  +E +   V
Sbjct: 139 VTTKAAQSLLIFMALVALLMTVYFRSWRMAASALLALLHDIAVTVGVFAILQVEVSPATV 198

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
              LT++GYS+ D VVV+D++R+           +F + ++ ++N+T+ RS+ TS+ A +
Sbjct: 199 IGFLTILGYSLYDTVVVFDKVRELTGDVYEQKHYTFAEYVNLAVNQTMVRSINTSVVALL 258

Query: 782 SVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            V  + V      G   +   ++ +  G++    SSIFIA+P+L+   +  +K
Sbjct: 259 PVGAILVIGSLALGPGTLVDISLALFIGMIAGTYSSIFIASPLLVSFQEMSSK 311


>gi|171910184|ref|ZP_02925654.1| multidrug efflux RND transporter MexF [Verrucomicrobium spinosum
           DSM 4136]
          Length = 1067

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/596 (12%), Positives = 168/596 (28%), Gaps = 37/596 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L        Q  + ++P  +P   +                  
Sbjct: 10  RPVFAAVVSIVITLLGGLA-----YFQLPVSQYPEVVPPTVV---------VSATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    ++  + ++       S        IT++F            V   +  
Sbjct: 56  AEVLADTVATPLEQEINGVENMLYLSSSSTSDGRLSITVTFKLGTDLNQAQVLVQNRVNA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  +          +  Q          +  +  +  Q  ++I       
Sbjct: 116 ALPRLPEEVRRLGVTALKRSPDLTMAIQFYSPDDTRDVLYLANYVNLQVQNRIARVPGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    DP +L     T   +       N        G          QY
Sbjct: 176 EASTLGGLDFTMRIWLDPEKLAVRNLTAGDVVSAIREQNVQVAAGQLGQPPAPSGLQFQY 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I           
Sbjct: 236 TLTTQGRLRSAE-------------QFGRIVLRTGGSGDVIRLQDVARIELGGKDYAVKS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T +      A +     P     +          S   
Sbjct: 283 YRDGKNSVSLRVFQLPGTNALQTSDAVYAAMADISKRFPPGVDYSINYDPTKFVRSSMKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ TLA++S  G +L   S+ G+V
Sbjct: 343 VLHTLVEAVLLVVLVVVVFLQSWRASVIPLLAVPVSLVGTLAVMSAFGFSLNNLSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +     K  +   +           +    +      V   F G
Sbjct: 403 LAIGIVVDDAIVVVENVERYLAKGFTPREATLRAMKEVTGPVVAIALVLCAVFVPTAFLG 462

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+  S +IS   ++++  A+   ++R+ + K            + + +
Sbjct: 463 GITGEFYRQFALTIAASTVISAINSLTLSPALAALLLRHHEAK------PDIMTRLIEGL 516

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              F R      G        SI  +  H +   + + G I   V A + V    +
Sbjct: 517 LGWFFRIFNRAFGAMSEMYAKSIAKVIRHAVLSLLIYGGLIAFAVHAFKKVPTGFI 572



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/412 (11%), Positives = 126/412 (30%), Gaps = 19/412 (4%)

Query: 438  IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
            I +E  K      S +   +       D     ++        G G   GF + +     
Sbjct: 638  IPDEFEKRTDPSLSANALMATLRKKFADIQEARVLVLPPPPLRGLGNAGGFKLQVEDLNN 697

Query: 498  ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
              +    +  R  +  +       S+     S        I  +  +     +       
Sbjct: 698  AGLPALEAATRKFLDALSAEPGFSSMITGFRSNNPQFNLVIDRERAKTMNVSISAINDTL 757

Query: 558  ICSICLLFTHGLN-----YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
               +   + +  N     + +         +       L     N E + +G +      
Sbjct: 758  QTYLGSTYVNDFNLFGRTWQVMAMAEPANRMKPEDIGRLRTRNMNGEMVPLGALVKVERI 817

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            G  + + R        ++ +   E+   ++ + V     Q+          +L  + I+ 
Sbjct: 818  GGADRVQRYNMFVSSDISGSTSAEISSGEMIQRVDELAKQHLPEGFDYEWTDLTYQQILA 877

Query: 673  -------VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                     +  + + + +  +++ W   L  I  + + +   +G   + G++ N+    
Sbjct: 878  GNSIVYIFPLCVLFVFLVLSAQYESWALPLAVILIVPMCLLSAIGGVWISGMDNNIFTQI 937

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ L+G +  + +++ +  R   +     +S  D   ++    L   + TS A  + VL
Sbjct: 938  GLVVLVGLASKNAILIVEFAR---QQQDLGMSRFDAAVEACRLRLRPILMTSFAFILGVL 994

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            P+ +    G  +  +    + +G++      +       + I  +      I
Sbjct: 995  PLVLAKGAGAEMRNALGTAVFYGMLGVTFFGLIFTPVFYVVIAKFMKDRKEI 1046



 Score = 42.4 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 53/128 (41%), Gaps = 8/128 (6%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  ++  +  + + +  TL   + FG   N  ++  +  ++   +   V     + +N+
Sbjct: 364 SWRASVIPLLAVPVSLVGTLAVMSAFGFSLNNLSLFGL--VLAIGI--VVDDAIVVVENV 419

Query: 749 KLY-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
           + Y     + R+   +++ E  G  V  ++      +P A  G   G     FA+ +A  
Sbjct: 420 ERYLAKGFTPREATLRAMKEVTGPVVAIALVLCAVFVPTAFLGGITGEFYRQFALTIAAS 479

Query: 805 IVVAASSS 812
            V++A +S
Sbjct: 480 TVISAINS 487


>gi|218531582|ref|YP_002422398.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
 gi|218523885|gb|ACK84470.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
          Length = 1056

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/602 (14%), Positives = 171/602 (28%), Gaps = 43/602 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P   P               + L    
Sbjct: 8   RPVFAWVVALFILLGGALSI-----PQLPIAQYPIIAPPA-------------IALSTSY 49

Query: 63  DDF-VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
               V       +  +   L      +       +    +IT SF           +V  
Sbjct: 50  PGASVENLYTGTTRLIEDELNGAANILSFESASDSFGVVEITASFQPGTDPGYAGVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  ++       ++ +         +  +     +IR  I++I   
Sbjct: 110 RLKRVEARLPAEVRQQGILVEEASAATLNIITLVSTDGKTDEVGLGDFLIRNVINEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +LR L    A ++      N        G +   +  
Sbjct: 170 PGVGRATLY-STERALRIWIDPDKLRGLSLNAADVTKAIGRQNVQIASGAVGAQPSPERH 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              +     + + G            +       +                 I       
Sbjct: 229 AVNF----PIIVKGQ---------MTEPEAFGAIVLRANPDGSNVRLRDVARIELGGDDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +   T +        L           +      A   
Sbjct: 276 KFTTRLNGGPAAGISVTLAPDGNAIETAKAIRAKMVELSQFFPDTVKWDIPYDITPAVDA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   ++ L+    + + +  T  ++ L G ++ + ++
Sbjct: 336 SIEKVLHTLVEAVVLVFIVMFVFLQNIRYTLIPTIVVPIALFGTCTVMLLAGFSVNVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    N +      +     S+    I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMNEEGLPPKEATRKAMSQITGAIIGITLVLIAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
           + FF G      R F+I M  SI  S   A+S+  A+   +     K            F
Sbjct: 456 MAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPALCATMLKPIEKGHGHAKGGVFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
               D    ++ R   W +  S    +  + L+      +    +G + L       VD+
Sbjct: 516 NRFVDRETARYGRGVAWFIRKSGRVMLIYLVLVAGVAYAFMRLPEGFLPLEDQGFFTVDI 575

Query: 592 SV 593
             
Sbjct: 576 QT 577



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V            + +   G    +       G+++   + +     ++++  
Sbjct: 258 SNVRLRDVARIELGGDDYKFTTRLNGGPAAGISVTLAPDGNAIETAKAIRAKMVELSQFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P +   +            I K +  ++ + + + I +++  +   + L     + + + 
Sbjct: 318 PDTVKWDIPYDITPAVDASIEKVLHTLVEAVVLVFIVMFVFLQNIRYTLIPTIVVPIALF 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N+  +  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTCTVMLLAGFSVNVLTMFGMVLAIGILVDDAIVVVENV--ERIMNEEGLPPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  +  ++      +PMA + GSV      F+I M   I  +A  ++ +   +
Sbjct: 436 SQITGAIIGITLVLIAVFIPMAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPAL 492



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 75/232 (32%), Gaps = 9/232 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              V   +   + +         +G      F+G ++  +     PG +   T        
Sbjct: 784  YSVKNAQGTMVPMSSFADLKWGVGPAQIIGFNGYQSVRITGDPAPGYTSGDTIKEMERLM 843

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                           +   +   +      + V+I  + +     +   W   +  +  +
Sbjct: 844  TFLPKGFGYAWTGQSLQEKEAGSQASLLLALSVLIVFLCLA---ALYESWSIPISVLLVI 900

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L +  ++    L G+  ++     ++T+IG S  + +++ +  R   K      +    
Sbjct: 901  PLGVIGSVAAVYLRGMPNDVYFKIGLITIIGLSAKNAILIVEFARDLWK---PGTNIVQA 957

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAA 809
              ++        V TS+A    V+P+A+  G+   S       +  G++ A 
Sbjct: 958  TIQAATLRFRPIVMTSLAFIFGVVPLAIATGASSKSQQAIGTGVMGGMISAT 1009


>gi|327540449|gb|EGF27034.1| SecF protein [Rhodopirellula baltica WH47]
          Length = 1096

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 121/239 (50%), Gaps = 16/239 (6%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                     + L   +++    +     ++++ +   ++       ++  VG +++ ++I
Sbjct: 857  EDIEAWSPGSTLAFPKWRVQLPLGGDNAIKVMAEMEKQLDSDPVWISSSAVGARVAGDMI 916

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE-------- 717
             +    +  S + ++ YIW RF +  +   A+  L+ D+  TLG  A+            
Sbjct: 917  SRAFGALFASLLCIIGYIWFRFQRVIYGFAAVVALLHDVAITLGAIAISYWVADALGFLL 976

Query: 718  -----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                  +LT VAA+LT+IGYS+ND +VV+DR+R+            ++I+ SIN+TL R+
Sbjct: 977  IDPFKISLTVVAALLTIIGYSLNDTIVVFDRIRETKGKAPRLTG--EMINTSINQTLSRT 1034

Query: 773  VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + TS+   I V+ +  +GG  I +FA  +  G++V   SS+F+A+P+LL++ +   K A
Sbjct: 1035 LLTSLTTLIVVVLLYAFGGEGIHAFAFALVIGVIVGTYSSVFVASPVLLWLVERAEKKA 1093



 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 90/256 (35%), Gaps = 4/256 (1%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           + +   G  +   L             L  +   ++       E                
Sbjct: 319 FTLTDMGSGRFRALTTNNAPDGSRTRQLGIVLDDELLSAPSIQEPMNKNGRITGNFTRDQ 378

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
              +++++K                 VG  +  +   KG+  + IS   +L++I + +++
Sbjct: 379 VDSLVQILKAGQLPATVTKQPIAENEVGATLGADTRTKGLYSIAISLGLVLVFILVYYRF 438

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              + A   LI+++   L           L  +A ++  +G SV+  V++++R+R+ +  
Sbjct: 439 -AGVVACIALIMNMAMILATMVFINQPLTLPGLAGLVLTVGMSVDANVLIFERIREEL-- 495

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
            +     R  I           +  ++   I+ + +   G   I  FA+ +  GI+ +  
Sbjct: 496 -SKGAKARMAIRNGFARATTTIIDANLTTLITAIVLYAIGTDQIRGFAVTLILGILYSMF 554

Query: 811 SSIFIAAPILLFIYDW 826
           ++I+++  I       
Sbjct: 555 TAIYVSRTIFDLAERR 570



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 139/637 (21%), Positives = 242/637 (37%), Gaps = 35/637 (5%)

Query: 17  IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG-------- 68
            G ++        ++ ++FPS        LG+DL GG+ LV E+D +    G        
Sbjct: 71  FGFILLAITASGVTLANKFPS--------LGIDLSGGTILVYELDPEKQAAGVEAGGQRI 122

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSK 125
             +     L   +   G     +R    +   I +   D    + I   +    Q   + 
Sbjct: 123 TSEDLVAPLTRRINPAGTQEIVIRPYGEQQIEIIIPEKDPDAVDRIKGLIEEAGQLRFAI 182

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
           L        L+    ++            ++    +    I  +   +   ++       
Sbjct: 183 LANQFDHQTLINEAIEQAESTQPGVATKDMVGSPEDSLYGIWARIGFEEKETDGVRP--- 239

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
                  +             G    +     + + +     +      D+     ++  
Sbjct: 240 ------MMVPISGALARNPRTGAILNVPAEARVGDETVSVARWLQTQDFDNIEVLMVINP 293

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD---GRV 302
           K++I G  L  A + FD K    V     D    R     T +         L       
Sbjct: 294 KLDILGEDLAYAASTFDEKGAPAVAFTLTDMGSGRFRALTTNNAPDGSRTRQLGIVLDDE 353

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSDS 360
           L +    Q   +   +I+GNFT +    L  +L+AG LP  +      E  VGA LG+D+
Sbjct: 354 LLSAPSIQEPMNKNGRITGNFTRDQVDSLVQILKAGQLPATVTKQPIAENEVGATLGADT 413

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             KG  +I   L L+++F++V Y   G+VA  ++ +N+ + LA +  +   LTLP +AG+
Sbjct: 414 RTKGLYSIAISLGLVLVFILVYYRFAGVVACIALIMNMAMILATMVFINQPLTLPGLAGL 473

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +G++VD+N+L+ ERIREE  K      ++  GF+RA +TI D+N+T LI  +VL+  
Sbjct: 474 VLTVGMSVDANVLIFERIREELSKGAKARMAIRNGFARATTTIIDANLTTLITAIVLYAI 533

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-KSIDINPLSRFFLIPDCIA 539
           G   +RGFA+T+ L IL SMFTAI + R +     R   +   +     S          
Sbjct: 534 GTDQIRGFAVTLILGILYSMFTAIYVSRTIFDLAERRGFLSLGMSDGVNSIRSAFAGGGQ 593

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSNL 598
             F+      + +S +  +C +  LF  G +   IDF GG  +    + P     +R  +
Sbjct: 594 FNFISKGKVTLTMSAILVVCGLAALFARGQSILDIDFAGGSSVQFRVDEPTKADEIREIM 653

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                   +           +    +       + V 
Sbjct: 654 NKAVAASDNSSVQFTVNGVSMEGTEEGTVFKIDSSVE 690


>gi|322433849|ref|YP_004216061.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX9]
 gi|321161576|gb|ADW67281.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX9]
          Length = 1076

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/511 (13%), Positives = 137/511 (26%), Gaps = 40/511 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +   +G +             +FP  +P             + +++    
Sbjct: 8   RPIVAIVIAILTVILGTVSMF-----TLATSQFPDIVP-------------TEILVTATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQNKIT---LSFADSRFKENIADKVTL 117
                  L       +   +     +         N +    + F              L
Sbjct: 50  PGADAKTLAQAVSTPIEQQMNGVDNMIYMDSVSANNGVVQLFVDFDVKTDPNIDQVLSQL 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L        L         ++L   N           +   I    DQI   
Sbjct: 110 RVDQAQSQLPAQVTTAGLTVQKALTSPLMLIAVNSPGNKLSQDFLTNYAIINLQDQITRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          L    DP++L +L  T  ++       NN       G   +    
Sbjct: 170 KGVSRVQIFGGQ-YALRIWVDPNKLAKLGVTAPEVIQAIQTQNNVNPAGQIGAEPIPKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  +  +              K  +    I                 I       
Sbjct: 229 QFTYTVRTQGRL-------------VKPEEFGAIILRANADGSILHLSDVARIELGDQAY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L A         V      A   
Sbjct: 276 AISGRYNQNPSGVMAVYQLPGSNAVETAKLVNARMKELSATFPTGISYNVPLDTTKAVSS 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
             +    T     GLV++V+F+ +   +  L+   ++ +++I T  +   LG ++   S+
Sbjct: 336 GINEIVITLLEALGLVVVVVFIFLQGWRATLIPLLAVPVSLIGTFIIFPALGFSINTLSL 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+VL IGL VD  I+V E +     +      +           +    +      +  
Sbjct: 396 FGLVLAIGLVVDDAIIVVEAVEHHIDEGMDPKSATIKAMEEVGGPVVAIALILAAVFIPT 455

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAIS 505
            F     G   + FA+T+ +S+LIS F A++
Sbjct: 456 AFIPGITGRLYQQFAVTIAISVLISAFNALT 486



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 88/227 (38%), Gaps = 7/227 (3%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           LS V       Q   IS +        +   Q    ++V   +++    K+++   P   
Sbjct: 262 LSDVARIELGDQAYAISGRYNQNPSGVMAVYQLPGSNAVETAKLVNARMKELSATFPTGI 321

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N  +   K     I + ++ ++ +   +++ ++I  + W   L  +  + + +  T  
Sbjct: 322 SYNVPLDTTKAVSSGINEIVITLLEALGLVVVVVFIFLQGWRATLIPLLAVPVSLIGTFI 381

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F   G   N  ++  ++  IG  V+D ++V + +          +  +    K++ E  
Sbjct: 382 IFPALGFSINTLSLFGLVLAIGLVVDDAIIVVEAV---EHHIDEGMDPKSATIKAMEEVG 438

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
           G  V  ++      +P A   G        FA+ +A  ++++A +++
Sbjct: 439 GPVVAIALILAAVFIPTAFIPGITGRLYQQFAVTIAISVLISAFNAL 485



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 67/177 (37%), Gaps = 18/177 (10%)

Query: 646  VPLSTIQNTEIVGPKISRELIRKGI--VGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
              +      +  G     ++ +KG+    V  +S + + + +   ++ W      + +  
Sbjct: 849  DTMPPGAGFDYSGISYQEDMAQKGVPTYAVFGLSLLFVFLILAALYESWTLPFSVLLSTP 908

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + I        +  +E ++ A   V+ LIG S  + +++ +  + N   Y + +S  +  
Sbjct: 909  VAILGGYIALHIRTLENDIFATIGVVMLIGLSAKNAILIVEFAKTN---YESGMSISEAA 965

Query: 762  DKSINETLGRSVYTSMAAFISVLPMA-----------VWGGSVIGSFAIPMAFGIVV 807
              +        V T++A     LP+            + G +VIG   +  A G++ 
Sbjct: 966  LSAARLRFRPIVMTALAFVFGCLPLWTATGAGAASRRILGTTVIGGMFLSTAIGLIF 1022


>gi|225423400|gb|ACN91220.1| CmeB [Campylobacter fetus]
          Length = 1048

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/573 (12%), Positives = 166/573 (28%), Gaps = 41/573 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +      L  S ++ +P   P               ++++ + 
Sbjct: 9   RPVFACVLSIIIVIAGYI-----GLKSSPIEEYPQLTPP-------------QIMVQANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L + +        +   S       +++ F      +     V+ 
Sbjct: 51  SGADAQTIADTIAAPLENAINGVQDMIYMQSTSSSAGTMSLSVYFKIGTNPQTATVNVSN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L  + K+  +         + +             E S  I     D I   
Sbjct: 111 RVTPALSLLPEEVKRVGVTVRERSSSILNVLSFYDPSGKMSDTEISNYININVADAIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +     P  L++   TT  +       N+       G +  + S+
Sbjct: 171 PGVGDAVVIGNKDYSMRVWIKPDLLKKYSLTTTDVINSIKEQNSQYATGKIGEQPTQTSN 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y ++ +  +                 +    I                 +       
Sbjct: 231 PYVYAIKPEGRL-------------KNVSEFENIIIKANNKGNIIKLKDVATVELGAQNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +    +   +   ++  +   T +        L+A        IV          
Sbjct: 278 TFAGRINGATMIPMLVFLQSGANALNTADAIVKRVDELKASFPGDLTYIVGYDTTEFVKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV++M +   +  ++   ++ ++++     L  +G ++ L ++
Sbjct: 338 SIDEVIKTFIEAMILVVIVMYMFLGNVRATIIPMLAVPVSILGAFGGLYAMGFSINLITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             ++L IG+ VD  I+V E +     +  +      ++          I    + + +  
Sbjct: 398 FALILAIGIVVDDAIIVIENVERILHEEPNLTVKEATIKAMSEIVAPVISIVLVLSAVFI 457

Query: 475 VVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V F  G  G   R FA+T+ +S+ IS   A+++  A+   I+R K+            F
Sbjct: 458 PVSFMEGFVGVIQRQFALTLVVSVCISGLVALTLTPALCAMILRKKENPPFWFVRKFNEF 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
                       A+     I  L  +  I  + 
Sbjct: 518 FDFSTKIFTAGVAKILKHVIMSLICVGIIIFMM 550



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 81/212 (38%), Gaps = 15/212 (7%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A  + ++ +K      +      +T         E+I+  I  +I+  I M +++ 
Sbjct: 303 NTADAIVKRVDELKASFPGDLTYIVGYDTTEFVKVSIDEVIKTFIEAMILVVIVMYMFLG 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +  +  + + I    G     G   NL  + A++  IG  V+D ++V + + 
Sbjct: 363 ---NVRATIIPMLAVPVSILGAFGGLYAMGFSINLITLFALILAIGIVVDDAIIVIENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-------WGGSVIGSFA 798
           + +     +++ ++   K+++E +   +    +  + +  + +       + G +   FA
Sbjct: 419 ERILHEEPNLTVKEATIKAMSEIVAPVI----SIVLVLSAVFIPVSFMEGFVGVIQRQFA 474

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           + +   + ++   ++ +   +   I   +   
Sbjct: 475 LTLVVSVCISGLVALTLTPALCAMILRKKENP 506



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/381 (12%), Positives = 111/381 (29%), Gaps = 15/381 (3%)

Query: 461  STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              I   +IT           G    +  A    +    +   A+++VR  +        +
Sbjct: 668  PPIMGLSITGGFELFAQNTEGKNYSQIEADMQKVVAKANAHPALNMVRTTLDTNFPQYDL 727

Query: 521  KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
                         I D           + V    +        + +              
Sbjct: 728  TLDKEKIKMMGINISDVFNTLSSTIGQYYVNDFNMLGKTFKVNIRSMSEYRDSPEDLRSL 787

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                 +  +       +L+     D   +        ++        S    + +E + K
Sbjct: 788  YVRSQDGKMVPLDSVVSLKRSLGPDNVDRFNAFPAAKIMGEPKPGYTSGDAIKAIEQIIK 847

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
            +                          KG    +   I + + +  ++ +W  +L  +T 
Sbjct: 848  EELPTGYDIGWSG----SAYQEVASTGKGAQAFVFGMIFVFLILAAQYERWLMSLAVVTA 903

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +   +  +L F    G+  ++     +L LIG +  + +++ +     M+ +    S ++
Sbjct: 904  VPFSVFGSLLFTWTRGLSNDVYFQIGLLLLIGLAAKNAILIVEFA---MQEHLAGKSIKE 960

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +        V TS+A  + VLPM V    G +   +    +  G++ A++ +IF  
Sbjct: 961  AAINAARMRFRPIVMTSLAFTLGVLPMVVATGAGAASRHALGTGVIGGMIAASTIAIFFV 1020

Query: 817  APILLFIYDWR----AKNARI 833
                  +  +      K  +I
Sbjct: 1021 PLFFYILESFNLWLDKKRGKI 1041


>gi|288573388|ref|ZP_06391745.1| acriflavin resistance protein [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569129|gb|EFC90686.1| acriflavin resistance protein [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 1039

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/682 (11%), Positives = 205/682 (30%), Gaps = 42/682 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +VIL + +   G+       + +      P  M                  +E   
Sbjct: 11  RPVTVVILTTALIVFGVYAFANMGMERMPNVDLPYVM--------------VQTTMEGAS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V+  +    +E  + +        S  + ++ I + F   +  +  A  V   +   
Sbjct: 57  PSVVDNDITDVLEEQINTIDGIKNIDSSSYEGRSVIAIEFQLDKDVDVAASDVRAKVNLA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  +    ++   +  +++I+    N    +        +I RQR   +   +    
Sbjct: 117 RGSLPDEADDPVVDKFSFDDMAIMTIAVNSTADMRSTSTYVDKIARQR---LQTVKGVGN 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP  L+    T   +       +                      
Sbjct: 174 AQAVGLREREIRIWLDPIALQARGLTATDIKNAINEKHVELPAGRIESESQEFG------ 227

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               + ++G +           + + +  ++                +            
Sbjct: 228 ----IRLAGEY----------GSIEALSQMAVARRNGALVRLKDVARVEDGFEDRRSIAT 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +     +    +   L A +       + +      + S +  
Sbjct: 274 YDGKETILIQIRKQRGTNEVALAKDVKAMVDTLNATAPKGISLKIVQDTSRFIIRSMNGV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G   +   +  I++F+ +   +   VA  +I + +I TL +L  LG T+   ++ G+ L
Sbjct: 334 RGDIIMGIMMTSIIMFLFLRTIRATFVAVITIPVCLIGTLIVLDGLGVTINNMTMLGLSL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G+ VDS  +V E I       ++   S   G S    ++     T +   + + F   
Sbjct: 394 AVGMVVDSTTVVMENIHRHKEMGKTAMRSSADGGSEVGFSVLAGAATTMAVFLPVAFMSG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP--DC 537
             G     F IT+ ++ILIS+  ++++   +   I+  +   ++     + F ++     
Sbjct: 454 IIGRFFYAFGITVAMTILISLILSLTLTPFLCSRILGRQTESALTRAMEAPFLVLERLYT 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             +           I  +    S   + T   +     +   +  +      + S+ ++ 
Sbjct: 514 GLLGAAVRHRLITLIVAVAIFASGLWMATQLGSEFFPNEDRGRFKINFELSAEASLQQTE 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
              L++G +  Q+      +      Q G+    T  +E+V +       +   +  + +
Sbjct: 574 DFLLELGKLVRQDPRVVYTYGTVGSGQGGEVYKGTITVELVPRDERAPFYVIMGEYRKKL 633

Query: 658 GPKISRELIRKGIVGVIISAIA 679
                 ++      G  IS + 
Sbjct: 634 AVYRDVDITLGRWGGSDISLVL 655



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/167 (17%), Positives = 70/167 (41%), Gaps = 7/167 (4%)

Query: 671  VGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              +  + + + + + I+F+ +   L  +  L L      G   L GI  ++ +   ++ L
Sbjct: 845  TALAFAILLVYMVMAIQFESFMHPLTIMFALPLMTAGAFGLLLLTGIRLSVMSFMGIILL 904

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G  VN+ +++ D      +     +     I K+    L   + T+ +  + +LP+A+ 
Sbjct: 905  VGIVVNNAILLVDF---TNQQREQGMDKISAIMKAAPLRLRPILMTTCSTMVGMLPIALG 961

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               GG +    +I +  G+  A   ++ +   I L + D   +  R+
Sbjct: 962  LSEGGEIRQPMSITVIGGLFTATLLTLVVIPVIYLIVDDMTDRVKRV 1008



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 73/201 (36%), Gaps = 12/201 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK----- 668
           +    + +Q +      +  + + VK  +  +   +    +  +    SR +IR      
Sbjct: 275 DGKETILIQIRKQRGTNEVALAKDVKAMVDTLNATAPKGISLKIVQDTSRFIIRSMNGVR 334

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           G + + I   ++++++++R        A+ T+ + +  TL      G+  N   +  +  
Sbjct: 335 GDIIMGIMMTSIIMFLFLR-TIRATFVAVITIPVCLIGTLIVLDGLGVTINNMTMLGLSL 393

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  V+   VV + +    +      +         +E     +  +       LP+A 
Sbjct: 394 AVGMVVDSTTVVMENIH---RHKEMGKTAMRSSADGGSEVGFSVLAGAATTMAVFLPVAF 450

Query: 789 WGGSVIGSFAIPMAFGIVVAA 809
             G +   F    AFGI VA 
Sbjct: 451 MSGIIGRFFY---AFGITVAM 468


>gi|332885606|gb|EGK05852.1| hypothetical protein HMPREF9456_02116 [Dysgonomonas mossii DSM
           22836]
          Length = 1011

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/541 (12%), Positives = 153/541 (28%), Gaps = 39/541 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +GL+           +  +P+                  +     
Sbjct: 9   KRPVLATVFVLIIFLLGLI-----GYTYLGVREYPNIDNPII---------SVDVSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +        S  Q   +IT+ F  S   E  A+ V   +  
Sbjct: 55  NAEIIENQITEPLEQNINGIPGIRSLTSSSSQGSCRITVEFELSVDLETAANDVRDKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D     +         I+    +I       +E S        +++    +  
Sbjct: 115 AQRYLPRDCDPPTVSKADADANPIIQI--SIQSEKRSLLELSEIAELTVKERLQTIPNVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP ++     T   +       N            L  S     
Sbjct: 173 AVEIWGQNRYSMRLWLDPVKMASYGITPMDVKSAVDKENVELPSGSIEGDNLELSIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L++   E                      ++   E                         
Sbjct: 233 LMQTPEEF--------------------NNMIIKEDNYNVVRFRDVGTAELGTENYKSIM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   +   +     + A +    L+          V   N      S + 
Sbjct: 273 RRNGVPAVSTVIIPQPGANQIEISDEAMVRLEQLKKDLPEDVKIDVAFDNTKFIRASIAE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+I++F+ +   +  LV    I ++++    ++ + G ++ + S+  +V
Sbjct: 333 VEETVYIAFALVVIIIFLFLRDWRVTLVPCVVIPVSLVGAFFVMYVAGFSINVLSMLAVV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +GL VD  I+V E I  +     +   +   G    +  +  + ++ +     + F  
Sbjct: 393 LAVGLVVDDAIVVTENIYLKIEGGMTPKQAGIEGSKEIFFAVISTTVSVVAVFFPIVFLE 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F+I +  ++LIS F A++    +   +++ K            FF      
Sbjct: 453 GMTGRLFREFSIVIAGAVLISAFVALTFTPMLATKLLKKKDQAGWFYRKTDPFFQWLTQT 512

Query: 539 A 539
            
Sbjct: 513 Y 513



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 58/145 (40%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ L I   L F  +  I  N+ +   ++ LIG    + +++ +      
Sbjct: 866  SFKDPFVIMLTVPLAIAGALLFMYIKDITMNIFSQIGIIMLIGLVAKNGILIVEFAN--- 922

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGI 805
            +     +S  + I  +  + L   + TS +  + +LP+               + +  G+
Sbjct: 923  QRQEAGMSKLEAIQGAAVQRLRPILMTSFSTVLGLLPLIFASAEGANGRMAMGVAVIGGM 982

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +++   +IFI   + L+I   R+K 
Sbjct: 983  MISTLLTIFIVPAMYLYISTDRSKK 1007



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 82/250 (32%), Gaps = 12/250 (4%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
               ++   R    +    +             V     P     Q  + +    ++ ++
Sbjct: 247 EDNYNVVRFRDVGTAELGTENYKSIMRRNGVPAVSTVIIPQPGANQIEISDEAMVRLEQL 306

Query: 646 VPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                      V    ++ +          V +  + + ++I++++R  W   L     +
Sbjct: 307 KKDLPEDVKIDVAFDNTKFIRASIAEVEETVYIAFALVVIIIFLFLR-DWRVTLVPCVVI 365

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +        + G   N+ ++ AV+  +G  V+D +VV + +          ++ +  
Sbjct: 366 PVSLVGAFFVMYVAGFSINVLSMLAVVLAVGLVVDDAIVVTENI---YLKIEGGMTPKQA 422

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             +   E     + T+++      P+    G        F+I +A  ++++A  ++    
Sbjct: 423 GIEGSKEIFFAVISTTVSVVAVFFPIVFLEGMTGRLFREFSIVIAGAVLISAFVALTFTP 482

Query: 818 PILLFIYDWR 827
            +   +   +
Sbjct: 483 MLATKLLKKK 492


>gi|171320158|ref|ZP_02909221.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MEX-5]
 gi|171094602|gb|EDT39653.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria MEX-5]
          Length = 1045

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/615 (11%), Positives = 166/615 (26%), Gaps = 41/615 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G             + ++P   P              +       
Sbjct: 8   RPVFAWVIALFIMLGGAFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSATSSAGAASLYLTFKQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      +   ++     +     A++         +  +   +   +
Sbjct: 114 EARLPEPVRRDGIQVEKAADNIQLVVSLTSEDGRMTAVQLGEYASANVVQALRRVDGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKLAGHGLTASDIASAVRAHNARVTVGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +             I            
Sbjct: 233 VFADAPL-------------KTPADFGAIALRTQPDGSALHLRDVARIEFGGNDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L A   P     +          S +  
Sbjct: 280 VNGKVATGMGIKLAPGSNAVATEKRVRATMDELSAYFPPGVKYQIPYETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+    + + +  T  ++   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  + + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEGLAPYDATVKAMRQISGAIIGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+++ +SI  S F A+S+  A+   +          +       +     
Sbjct: 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVSGDHHEKRGFFGWFNGFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   W V    L +  +  L          + +G   + V+  +  
Sbjct: 520 STQRYATRVGAMLKKPLRWLVVYGALTAAAAFMLTQLPSAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIG 604
            L+    ++  ++  
Sbjct: 580 PLAETMQSVREVESY 594



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 72/203 (35%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                    ++ +       V       T         +++   I   ++  + M +++ 
Sbjct: 300 ATEKRVRATMDELSAYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T G     G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 360 ---NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENV- 415

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    ++  D   K++ +  G  +  ++      +PMA +GG+V      FA+ +A
Sbjct: 416 -ERLMVEEGLAPYDATVKAMRQISGAIIGITVVLTSVFVPMAFFGGAVGNIYRQFALSLA 474

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I  +A  ++ +   +   +  
Sbjct: 475 VSIGFSAFLALSLTPALCATLLK 497



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 71/210 (33%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           I  +              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAPGHSSGEAMAAIERLAAKLPAGIGHAWSGQSFEERLSGAQAPMLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W      +  + L +   +    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ +  +    L    +S  D   ++    L   V TS+A  + VLP+A   G+  G+  
Sbjct: 938  LIVEVAKD---LVAQRMSLVDAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQM 994

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +  G++ A   ++F+     + +  
Sbjct: 995  AIGTGVLGGVITATVLAVFLVPLFFVIVGR 1024


>gi|148257262|ref|YP_001241847.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           BTAi1]
 gi|146409435|gb|ABQ37941.1| Putative component of multidrug efflux pump, acrB/acrD/acrF family
           [Bradyrhizobium sp. BTAi1]
          Length = 1051

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/688 (11%), Positives = 173/688 (25%), Gaps = 48/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC  G+L       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVAIFICLGGVLAI-----PFLPVAQYPIIAPP-------------SISISTTY 49

Query: 63  DDFVNG----FLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                      +    +E  +          +     + +I  SF      E  +  V  
Sbjct: 50  PGASTENLYYSVTRLIEEELNGAAGILNYESTSDTTGDVEIFASFKPGTDIEQASVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V  +L    +K  +         +              I       R  + ++   
Sbjct: 110 RIKRVEPRLPEAVRKQGIAILEASSAILQFVTLTSSDGSLDEIGLGDIATRYVLPELRRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L  L  T A +       N        G        
Sbjct: 170 PGVGRARLF-ATERAMRIWLDPDKLLGLGLTPADVDAAIAAQNAQVASGALGAPPAPTQQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q +V  K ++                 +    +    +            I       
Sbjct: 229 RLQNMVLVKGQL-------------ESPEEFGEIVLRANLNGSTVRLSDVARIEVAGLSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L A   P     V          
Sbjct: 276 AFSSWLNGRPAAAVAVQLAPSGNALATAAAVKARMEELAAFFPPGVKYEVSYDVTPVIAA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+F+ +   ++ L+    + + ++ T A+L  LG ++ + ++
Sbjct: 336 SVKKVLLTLAEAVALVFLVMFLFLQNIRYTLIPTIVVPIALLGTCAVLLGLGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      + D    +    +    +  +   V 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMAEEGLHPRAATDKAMEQITGAVIGITLVLMAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + FF G      + F+  M +SI  S F A+S+  A+   +         +         
Sbjct: 456 MAFFPGSVGIMYQQFSAAMVISIGFSSFLALSLTPALCATLLKPIEKGHGHATRGFFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +               G  + +   + +        L  G          ++  
Sbjct: 516 NRWFARVTSQYSTATRWVVVRGGRFMLLYLLLLAGLGYAFWRLPGGFLPVDDQGFVMVDV 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +     L+++           G         +      A T    +  K  +E  
Sbjct: 576 LTPADASANRTLDAVHAASEKLTATPGIDKVSFITGFSFFGQGANTAQAFVTLKDWSERG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              +             ++    +  + 
Sbjct: 636 RNESADALIARLNPELAKIRDAQVSVLA 663



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 86/245 (35%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V     +      S          +       G+++A    ++   +++    P 
Sbjct: 260 VRLSDVARIEVAGLSYAFSSWLNGRPAAAVAVQLAPSGNALATAAAVKARMEELAAFFPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                       +    ++K ++ +  +   + + +++  +   + L     + + +  T
Sbjct: 320 GVKYEVSYDVTPVIAASVKKVLLTLAEAVALVFLVMFLFLQNIRYTLIPTIVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  V+D +VV + +     +    +  R   DK++ +
Sbjct: 380 CAVLLGLGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLHPRAATDKAMEQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GSV      F+  M   I  ++  ++ +   +   + 
Sbjct: 438 ITGAVIGITLVLMAVFVPMAFFPGSVGIMYQQFSAAMVISIGFSSFLALSLTPALCATLL 497

Query: 825 DWRAK 829
               K
Sbjct: 498 KPIEK 502



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 86/253 (33%), Gaps = 9/253 (3%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
               ++ G   K    L           V  S+   +       Q    +    VR+   P
Sbjct: 767  IVQVDDGKRLKPEDLLTYSVRNSAGEMVPFSSFAKVVWDVGPTQVVGFDGYPSVRITGNP 826

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYI 684
                     +  +++ +  +            G  +  +L   + +  + +S + + + +
Sbjct: 827  APGYTSGDAIAEMERLMQTL---PKGFGHAWTGQSLQEKLAGSQAVFLLGLSILFVFLCL 883

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +  ++      G+  ++     ++T+IG S  + +++ + 
Sbjct: 884  AALYESWSIPFAVMLAVPLGLIGSVAAAWSRGLPNDVYFTVGIITIIGLSAKNAILIIEF 943

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
             +  +      +   +    +        V TS+A  + V+P+ +  G+   S    +  
Sbjct: 944  AKDLLA---RGVPLIEATITACELRFRPIVMTSLAFILGVVPLVIASGASAASQQ-ALGT 999

Query: 804  GIVVAASSSIFIA 816
            G++    ++  +A
Sbjct: 1000 GVLGGMITATVLA 1012


>gi|299139862|ref|ZP_07033034.1| protein-export membrane protein SecD [Acidobacterium sp. MP5ACTX8]
 gi|298598216|gb|EFI54382.1| protein-export membrane protein SecD [Acidobacterium sp. MP5ACTX8]
          Length = 525

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 152/533 (28%), Positives = 262/533 (49%), Gaps = 46/533 (8%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           I+  ++  +  +  +P+   +  +         +RI LGLDLRGG+HLVL+V+  + +N 
Sbjct: 12  IIAVLVIFVYGIFGIPHGSLKQSI--------TDRIHLGLDLRGGTHLVLKVNVAEALNS 63

Query: 69  FLQMYSDELRSFLKK-----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                   L S +              +      IT+S      + ++ D +T       
Sbjct: 64  ATDRDVQRLDSAIPGVTAAKLDPAHPEV------ITISGFQPAQQSSVHDTLTS------ 111

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST--I 181
                D     + T +     + + Q+ I  +    ++QS+E IRQR+D +G+SE     
Sbjct: 112 ----NDYAAYDVTTASTGGYVLTMKQSAIADLEKRTLDQSIETIRQRVDSLGVSEPVIEQ 167

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV---LPNNSKKGFMFGVRFLRD--- 235
             LG + IL+QLPG  DP  +  ++ +TAK+  H V    P+  +           D   
Sbjct: 168 YGLGDNEILVQLPGVDDPGHVESIIQSTAKLEIHAVVGSYPDEQQAMTALNGVLPPDQEL 227

Query: 236 --------SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                        YL++    + G     AT   D    +P +  +       RF++ T 
Sbjct: 228 VKGSSGIGGPDQVYLLQRASIVEGTDFRDATPQTDENG-RPDIGFTLTTEAGERFYKYTD 286

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            N G     ++    +      Q       +I+G FT + A  L+ MLR GSLP  ++ +
Sbjct: 287 ANKGTGSMAIVLENRVKEVATIQQAIRDSGRITGGFTQQQAQDLSMMLRTGSLPASISYL 346

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E R+VG  LG+ SI++G  A VAG++ +++FM++ Y   G+ AD ++FLN+++ L  +  
Sbjct: 347 ETRSVGPSLGAASIHQGVVAAVAGMLAVMVFMLIYYRGAGINADLALFLNLVILLGFMGF 406

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             A LTLP IAG++L IG+ VDSN+L+ ERIREE R  ++   ++  GF+ A+ TI D++
Sbjct: 407 THAVLTLPGIAGVILTIGMGVDSNVLIFERIREELRLGKTTAAAVQEGFAHAWITIVDTH 466

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +T +++  +LF FG G V+GFA+T+   +L ++FTA+ + R +  +++  K+ 
Sbjct: 467 VTTIVSAGILFLFGTGPVKGFAVTLTFGLLANIFTAVFVSRVIFDYLLSKKER 519



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 104/264 (39%), Gaps = 5/264 (1%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
            G    G         R    +       S+ I   +           +R   +      
Sbjct: 264 NGRPDIGFTLTTEAGERFYKYTDANKGTGSMAIVLENRVKEVATIQQAIRDSGRITGGFT 323

Query: 631 QTRVLEMVKKKITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           Q +  ++     T  +P   +   T  VGP +    I +G+V  +   +A+++++ I ++
Sbjct: 324 QQQAQDLSMMLRTGSLPASISYLETRSVGPSLGAASIHQGVVAAVAGMLAVMVFMLIYYR 383

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               + A   L L++   LGF         L  +A V+  IG  V+  V++++R+R+ ++
Sbjct: 384 -GAGINADLALFLNLVILLGFMGFTHAVLTLPGIAGVILTIGMGVDSNVLIFERIREELR 442

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
           L     +    + +         V T +   +S   + ++G   +  FA+ + FG++   
Sbjct: 443 L---GKTTAAAVQEGFAHAWITIVDTHVTTIVSAGILFLFGTGPVKGFAVTLTFGLLANI 499

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
            +++F++  I  ++   + + A +
Sbjct: 500 FTAVFVSRVIFDYLLSKKERGAAL 523


>gi|207724535|ref|YP_002254932.1| multidrug efflux system transmembrane protein (partial sequence)
           [Ralstonia solanacearum MolK2]
 gi|206589757|emb|CAQ36718.1| multidrug efflux system transmembrane protein (partial sequence)
           [Ralstonia solanacearum MolK2]
          Length = 441

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/450 (11%), Positives = 116/450 (25%), Gaps = 29/450 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L           + ++PS  P                      
Sbjct: 8   RPIFAWVLAIIVMLAGALSIA-----TLPIAQYPSIAPPAV---------AITATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++    L        +     +  ITL+F +    +    +V   L  
Sbjct: 54  AKTLEDTVTQIIEQKMKGLDHLSYMASTSESSGSVTITLTFENGTDPDTAQVQVQNKLAL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T      + +     +    +  + S  +     D I   E   
Sbjct: 114 ATPLLPQEVQQQGVQVTKSATNFLNVLAFTSEDGSMNGSDLSDYVAANVQDAISRVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G      +     
Sbjct: 174 DTTLFGSQ-YAMRIWLDPNKLSNFSLTPLDVKTAIQAQNAQVSAGQLGAMPALGNQQINA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +   +    +        I           
Sbjct: 233 TITSQTRL-------------KTVEEFGNILLRTQTDGAQVRLRDVARIELGSENYNTVG 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T++      A L     P                S   
Sbjct: 280 RYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFPPGMKVQKPYDTTPFVRISIEE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ + ++ T  +L+  G T+   ++  +V
Sbjct: 340 VVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFGVLAACGFTINTLTMFAMV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS 451
           L IGL VD  I+V E +    R+    + S
Sbjct: 400 LAIGLLVDKAIVVVENVERVMREETRRWDS 429



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/170 (12%), Positives = 56/170 (32%), Gaps = 1/170 (0%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V       +  +   +        L        +++   + ++    ++    P
Sbjct: 259 QVRLRDVARIELGSENYNTVGRYNGKPAAGLAIKLATGANALDTVKAIDARVAELEPFFP 318

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                          R  I + +  ++ +   + + +++  + +   L     + + +  
Sbjct: 319 PGMKVQKPYDTTPFVRISIEEVVRTLVEAVALVFLVMYLFLQNFRATLIPTIAVPVVLLG 378

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           T G  A  G   N   + A++  IG  V+  +VV + + + M+  T    
Sbjct: 379 TFGVLAACGFTINTLTMFAMVLAIGLLVDKAIVVVENVERVMREETRRWD 428


>gi|330999258|ref|ZP_08322975.1| RND transporter, HAE1 family [Parasutterella excrementihominis YIT
           11859]
 gi|329575116|gb|EGG56667.1| RND transporter, HAE1 family [Parasutterella excrementihominis YIT
           11859]
          Length = 1014

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 82/671 (12%), Positives = 191/671 (28%), Gaps = 34/671 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  +I   GLL           + ++P   P                  E  +   +   
Sbjct: 1   MSILIVIAGLLAG-----RVLPMGQYPDITPPVVF---------ISTSYEGADAQTLAKT 46

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
           +    ++  S ++       S+R   N +IT +F       +   ++   ++    +L  
Sbjct: 47  VAAPIEDQLSGVEGLLYYETSIRSNGNVRITCTFEVGTNPNDAMLEINNRVRSAERRLPE 106

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
             ++N +      E ++++            I+ +  +    +D I              
Sbjct: 107 SVRQNGVNVRKRSEETLMIVPFYSPNGTLKPIQLADYVNLNVVDAIKRVPGVGDADVFGN 166

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
               +    +P ++ QL  T   +       NN       G     D     Y +  K +
Sbjct: 167 AQSAMRIWLNPKKMAQLGITAIDVRKAIEEQNNQYAAGKVGTSPTTDDQQLVYTIRTKGQ 226

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +                 +                      +            L     
Sbjct: 227 L-------------LTPEEFGNITVRSRGADGIVRIHDIARVEVGNRSYEAYNQLNDVPS 273

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                  +   +   T          L          ++ + N      + +    T   
Sbjct: 274 VTFAVYLQTGANAMQTAVDVKKRLQELSKNFPDDIAYVITDDNSRFVEAALNEVVQTLLE 333

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              LVL+V+++ +   +  L+   ++ +++I TLA L  L  +L   ++  + L IG+ V
Sbjct: 334 AGLLVLLVVYLFLQNWRATLIPMLAVPVSLIGTLAGLWALNFSLNTLTLFAMTLAIGIVV 393

Query: 429 DSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGA 484
           D  I+V E +       + + F +          A   I     T       L    G  
Sbjct: 394 DDAIVVLENVERIMETEKLNAFQASQKAMKEVAGALVAIVLVLSTVFTPVAFLGGIAGEL 453

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIPDCIAIQF 542
            R FA+T+G+S+++S F A+++  A+   +   + K  K   +          + I    
Sbjct: 454 YRQFAVTIGVSVVLSGFVALTLTPALCAILLRNKSKPFKIFRLFNDGFERFKLNYIKGVS 513

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
              R      +IL ++   C  F   +      +    +  +A +  + + +      + 
Sbjct: 514 FNLRHRWFTAAILVAVTVGCWEFLQIVPTSFVPREDQGILRVAIQLPEGATLNRTGVVVT 573

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                 +     +N    +      +  ++    ++ +         + +        + 
Sbjct: 574 DLSREIRKIPEVENVTALVANDTIANDTKSNAASLIVQLKPWDQRTRSAETIRRQLQTLV 633

Query: 663 RELIRKGIVGV 673
                     V
Sbjct: 634 NARTDAVGQAV 644



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 7/186 (3%)

Query: 651  IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLG 709
                        + +            I + + +  +F +W   +  +  +   +   L 
Sbjct: 832  YYVDWTGQAFHEKRIGSSSAAAFAFGLIIVFLILAAQFERWSLPIAVVMAVPYSVLGALV 891

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 G   ++     +L LIG +  + +++ +      +     +  R    ++    L
Sbjct: 892  ATYFRGFSNDIYFQIGLLVLIGLTAKNAILIVEFA---AQKMEEGMEARQAALEAAKLRL 948

Query: 770  GRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               V TSMA  + V+P+A   G+      S    +  G++ A   + F       +    
Sbjct: 949  RPIVMTSMAFILGVIPLATATGAGAAARQSMGTGVLGGMLAATFITTFFIPVFFTWFVSK 1008

Query: 827  RAKNAR 832
            + K  R
Sbjct: 1009 KIKARR 1014



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 56/147 (38%), Gaps = 5/147 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRK 746
           W   L  +  + + +  TL          N   + A+   IG  V+D +VV    +R+ +
Sbjct: 349 WRATLIPMLAVPVSLIGTLAGLWALNFSLNTLTLFAMTLAIGIVVDDAIVVLENVERIME 408

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             KL     S +  + + +   L   V      F  V  +    G +   FA+ +   +V
Sbjct: 409 TEKLNAFQAS-QKAMKE-VAGALVAIVLVLSTVFTPVAFLGGIAGELYRQFAVTIGVSVV 466

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ +   +   +   ++K  +I
Sbjct: 467 LSGFVALTLTPALCAILLRNKSKPFKI 493


>gi|190573810|ref|YP_001971655.1| putative drug resistance membrane fusion protein [Stenotrophomonas
           maltophilia K279a]
 gi|190011732|emb|CAQ45352.1| putative drug resistance membrane fusion protein [Stenotrophomonas
           maltophilia K279a]
          Length = 1056

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 70/573 (12%), Positives = 159/573 (27%), Gaps = 37/573 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P + +            V     
Sbjct: 10  RPIFAAVLSIVIFAAGLITI-----PILPISEYPEVVPPSVVVR---------TVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  EG+         + +   T++F      +  A KV   +
Sbjct: 56  PKVIAETVATPLEEAINGV--EGMMYLKSVAGSDGVLQMTVTFRPGTDPDAAAVKVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +    +++      Q     +           D +     
Sbjct: 114 AQAQARLPEDVRRQGVTTQKQSPTFLMVVHLTSPQGKYDTLYLRNYARLHVKDALARIPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP ++     T + +       N        G   L DS   
Sbjct: 174 VGDAQIFGGGDYAMRAWLDPDKVASRGLTASDVVRAMREQNVQVSAGQLGAEPLPDSKFL 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             +       +                +    +                 +         
Sbjct: 234 TLINAQGRLKT--------------EKEFGDIVLKSGTDGEIVRLSDVARLELGAGDYTL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +        ++                     S 
Sbjct: 280 RSQLDGKNAVGIGIFQSPGANALEIRDQVISTMDEMQKTMPADVKYEAVYDTTIFVRDSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   S+ G
Sbjct: 340 KAVVSTLLEAIALVVLVVILFLQTWRASIIPLIAVPVSVVGTFAALYLLGFSINTLSLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  S   +           I    +      V + F
Sbjct: 400 LVLAIGIVVDDAIVVVENVERNIEEGLSPTAAAHQAMREVSGPIVAIALVLCAVFVPMAF 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIP 535
                G   + FA+T+ +S +IS   ++++  A+    +  +   K      + R F   
Sbjct: 460 LSGVTGQFYKQFAVTIAISTVISAINSLTLSPALAARLLKAHGAPKDGPSRLIDRLFGWV 519

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
                +F ++        +   +     +F   
Sbjct: 520 FRPFNRFFKSSSEKYERGVARILGRRGAVFVVY 552



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 86/284 (30%), Gaps = 13/284 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              +    F           G  +  V     +     R  +  +       Q F  +   
Sbjct: 762  YVNDFNQFGRTWQVIAQADGPFRETVEDIGKLRTRNDRGEMVPIGSMVTIKQTFGPDPVL 821

Query: 618  LVRLQYQPGDSVAQTRVL---EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                      +      L        K+TEI               +S +   +G    I
Sbjct: 822  RFNGYPAADLAGEADPRLLSSAEAMTKLTEIAGKVLPVGMTTEWTDLSYQQATQGKAAFI 881

Query: 675  ISAIAM----LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +  +A+    L+   +   W   L  I  + + +   L    L G + N+     ++ L+
Sbjct: 882  VFPVAIMLAFLVLAALYESWSLPLAVILIVPMTLLSALFGVWLTGGDNNVFVQVGLVVLM 941

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G +  + +++ +  R+   L        +   ++    L   V TS+A     +P+ +  
Sbjct: 942  GLACKNAILIVEFARE---LEMGGKGIVEAALEACRLRLRPIVMTSIAFIAGTVPLVLSH 998

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G  V     I +  G++      +F+     + +  +  +N 
Sbjct: 999  GAGAEVRSVTGITVFAGMLGVTLFGLFLTPVFYVALRKFVTRNG 1042



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 364 WRASIIPLIAVPVSVVGTFAALYLLGFSINTLSLFGLVLAIGIVVDDAIVVVENVERNIE 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S      +++ E  G  V  ++      +PMA   G        FA+ +A   V
Sbjct: 424 E---GLSPTAAAHQAMREVSGPIVAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTV 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 481 ISAINSLTLSPALAARLLK 499


>gi|315498299|ref|YP_004087103.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Asticcacaulis excentricus CB 48]
 gi|315416311|gb|ADU12952.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Asticcacaulis excentricus CB 48]
          Length = 1074

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/548 (12%), Positives = 154/548 (28%), Gaps = 32/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL      L    +  +P  +P   +            V     
Sbjct: 10  RPIFAGVLSLLIVVFGLLS-----LRTLPVSEYPEVVPPQVVVR---------AVYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  +  +       +        +TL+F      +     V   +  
Sbjct: 56  PAVIAETVATPIEEALTGTEDMIYMSSASTSDGQMTLTLTFKLGTNPDLAQQMVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  D +   + T   +    ++                   +    D++   E   
Sbjct: 116 AEARLPSDVRALGVTTQKSQSSLPLVVHLVSPNGRYDENYLRNYALIHVKDRLQKIEGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++ +   + + ++      N      + G    +     Q 
Sbjct: 176 PIQMFGGGEYSMRIWLDPQKVAERGLSASDVANAVRGENVQAAAGIVGASPGQPDITLQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                     +I          +      +    A      
Sbjct: 236 SVNAQGRLKTEEDFR--------------NIIVRSDNGAVTYLGDVARVELGAADYSLRS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +A  +            A L+          +          S   
Sbjct: 282 LLNNQKAVGIPIFEQAGANSLKVSADVKKAMAELQKTMPEGVEYRIAYDTTEYVQESIDS 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++VI T A++   G ++   ++ G+V
Sbjct: 342 VIHTLLEAILLVVIVVIVFLQTWRASIIPLLAVPVSVIGTFAVMHAFGFSINALTLFGLV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +       +S   +           I    +      V L F  
Sbjct: 402 LAIGIVVDDAIVVVENVERNIEAGKSPKEATYQAMREVSGPIIAIALVLAAVFVPLAFIT 461

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F++T+ +S +IS   ++++  A+   +++    K   +      +L     
Sbjct: 462 GLSGQFYRQFSLTIAISTVISAINSLTLSPALAALLLKDHHAKKDVLTRFMDRWLGGFFR 521

Query: 539 AIQFMRAR 546
                  R
Sbjct: 522 LFNRFFHR 529



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  +  + + +   +    + G + N+     +  L+G S  + +++ +  R+  
Sbjct: 901  SLVLPLSILLIVPMGLLAAITGVWISGGDNNIFTQIGLFVLVGLSAKNAILIVEFARE-- 958

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L            ++    L   + TS+A  + VLP+ +    G  +  +  + +  G+
Sbjct: 959  -LELAGHKPLQAAIEASRLRLRPILMTSIAFIMGVLPLVLAHGAGSEMRHAMGVAVFAGM 1017

Query: 806  VVAASSSIFIAAPILLFIY 824
            + A    +F+     + + 
Sbjct: 1018 IGATIFGLFLTPVFYVTLR 1036



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 85/227 (37%), Gaps = 17/227 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L + +   I      G  +  V    +   +  Q  + E V+ +I      
Sbjct: 274 AADYSLRSLLNNQKAVGIPIFEQAGANSLKVSADVKKAMAELQKTMPEGVEYRIAYDTTE 333

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
              ++ + V   +   ++   IV ++               W  ++  +  + + +  T 
Sbjct: 334 YVQESIDSVIHTLLEAILLVVIVVIVFLQT-----------WRASIIPLLAVPVSVIGTF 382

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                FG   N   +  ++  IG  V+D +VV + + +N++      S ++   +++ E 
Sbjct: 383 AVMHAFGFSINALTLFGLVLAIGIVVDDAIVVVENVERNIEA---GKSPKEATYQAMREV 439

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
            G  +  ++      +P+A      G     F++ +A   V++A +S
Sbjct: 440 SGPIIAIALVLAAVFVPLAFITGLSGQFYRQFSLTIAISTVISAINS 486


>gi|238790254|ref|ZP_04634028.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           frederiksenii ATCC 33641]
 gi|238721604|gb|EEQ13270.1| Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Yersinia
           frederiksenii ATCC 33641]
          Length = 719

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/684 (10%), Positives = 186/684 (27%), Gaps = 43/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITIVGWVS-----LHVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L + +     +         N   +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQAIASPLEAQVNGVSNMLYMESTSGNNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       +   +A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPKQTHNALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P R+  L  +   +       N        G       
Sbjct: 169 INGVGDVQVFGARDYSMRVWLNPQRMESLNVSVQDIVTALQQQNVQAAAGQIGSSPSTLD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +  +S                +    I                 +      
Sbjct: 229 QQQTLTISGQGRLS-------------DPQQFANVIIRSNPQGGMIRLGDVARVALGAQN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L A         +   +     
Sbjct: 276 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLSASFPSDLTYEINYDSTLPVT 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      +  +   +VL V+++ +   +   +   +I ++++ T A+L + G +    S
Sbjct: 336 ATLHEIAISLTLTLIVVLAVVYLFLQSMRATFIVALTIPVSLLGTFAVLYVFGYSANTLS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  I+L + + VD  I+V E +      + S     +     S+    I  + +  +   
Sbjct: 396 LFAIILALTIVVDDAIVVVENVERLLSNDPSLTPAQATGQAMSQIAGPIIATTLVLMAVF 455

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V +       G   R FA+T+  ++++S   A+++  A+   +++ + + +  +      
Sbjct: 456 VPIAILPGIVGELYRQFAVTLSAAVILSSINALTLSPALCAVLLKRRTLSNTGVFGGINR 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L         + +R     +  + ++  + L    G           +        + L
Sbjct: 516 GLDRARDGYVGLTSRISSRAVFSIAALLLVGLATWWGYTRLPTSFLPEEDQGYFFVSLQL 575

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK--KITEIVPLS 649
               S   +  + D  +Q           ++      ++             +       
Sbjct: 576 PDGASLNRTQTVMDQMYQQVTANDAVEDVIKITGFSLLSGNNSPNAGFAIVMLKPWGQRP 635

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
            I             +    I+ V
Sbjct: 636 HINQVLASIQANLAAIPSAMIMAV 659



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 93/248 (37%), Gaps = 5/248 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + L  V       Q   +S      E  FLV       +++     +     +++
Sbjct: 256 PQGGMIRLGDVARVALGAQNYQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLS 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P                  + +  + + ++ I +L  +++             T+ +
Sbjct: 316 ASFPSDLTYEINYDSTLPVTATLHEIAISLTLTLIVVLAVVYLFLQSMRATFIVALTIPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     +FG   N  ++ A++  +   V+D +VV + + + +     S++      
Sbjct: 376 SLLGTFAVLYVFGYSANTLSLFAIILALTIVVDDAIVVVENV-ERLLSNDPSLTPAQATG 434

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++++  G  + T++      +P+A+     G +   FA+ ++  +++++ +++ ++  +
Sbjct: 435 QAMSQIAGPIIATTLVLMAVFVPIAILPGIVGELYRQFAVTLSAAVILSSINALTLSPAL 494

Query: 820 LLFIYDWR 827
              +   R
Sbjct: 495 CAVLLKRR 502


>gi|70730228|ref|YP_259967.1| multidrug RND efflux transporter, permease MdtC [Pseudomonas
           fluorescens Pf-5]
 gi|68344527|gb|AAY92133.1| multidrug RND efflux transporter, permease protein MdtC
           [Pseudomonas fluorescens Pf-5]
          Length = 1035

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/543 (10%), Positives = 149/543 (27%), Gaps = 38/543 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L   I  +G +           +   P       +             L   
Sbjct: 9   KRPVATMLLSLAIMLLGGVS-----FGLLPVAPLPQMDFPVIV---------VQASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +           Q   ++ L F   R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSFGAIAGVNTMSSRSSQGSTRVILQFDLDRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +   +   
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSLTSDVLEKGQLYDLASTILSQSLSQVQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q       +       N  +                  
Sbjct: 174 EVQVGGSSLPAVRIELEPQLLNQYGVALDDVRNAIANANQRRPKGSVEDDQRLWQIQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E                      +    +                 +   +    +  
Sbjct: 234 QLEKA--------------------RDYEPLIIHYNNGAALRLKDVAKVSDGVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         L+A         +          +   
Sbjct: 274 FFNDDAAVLLVINRQAGANIIETVNEIKAQLPALQAVLPASVKLNLAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+++ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVALVILVVYLFLGNFRASLIPTLAVPVSLVGTFAIMYLYGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +  +   +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIDEGIAPMKAAYLGAKEVGFTLLSMNVSLVAVFLSILFMG 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F+IT+  +I++S+  ++++   +    ++       +             +
Sbjct: 454 GIIESLFREFSITLAAAIVVSLVVSLTLTPMLCARWLKPHTPGQENRLQRWSRRSNDWMM 513

Query: 539 AIQ 541
              
Sbjct: 514 GKY 516



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 87/237 (36%), Gaps = 7/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V    + ++    S    D     LV  +    + +     ++     +  ++P S   
Sbjct: 258 DVAKVSDGVEDRYNSGFFNDDAAVLLVINRQAGANIIETVNEIKAQLPALQAVLPASVKL 317

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N  +    + +  + +  + ++I+   +++ +++    +  +L     + + +  T    
Sbjct: 318 NLAMDRSPVIKATLHEAEMTLLIAVALVILVVYLFLGNFRASLIPTLAVPVSLVGTFAIM 377

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L+G   N  ++ A++   G  V+D +VV + +    +     I+          E    
Sbjct: 378 YLYGFSLNNLSLMALILATGLVVDDAIVVLENI---SRHIDEGIAPMKAAYLGAKEVGFT 434

Query: 772 SVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  +++     L +   GG   S+   F+I +A  IVV+   S+ +   +      
Sbjct: 435 LLSMNVSLVAVFLSILFMGGIIESLFREFSITLAAAIVVSLVVSLTLTPMLCARWLK 491


>gi|189345570|ref|YP_001942099.1| preprotein translocase subunit SecD [Chlorobium limicola DSM 245]
 gi|189339717|gb|ACD89120.1| protein-export membrane protein SecD [Chlorobium limicola DSM 245]
          Length = 607

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 113/462 (24%), Positives = 229/462 (49%), Gaps = 6/462 (1%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNS 124
               L    + +R+ + + G+    +    ++ I +  A    +  + + +    +    
Sbjct: 151 SEDALTRAREIIRNRIDQYGVAEPVITTQGSRRIIIELAGISDENRVRNLLKGTAKLEFK 210

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
            L    ++  ++     +++  L+  ++   +    + +  +          +      L
Sbjct: 211 LL----REPEVLLRVLDKLNSSLTAQSVVSALPAVADTAGVLPPASAAASKSAGPLYDVL 266

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
              +        +    + +L   +   +                ++  R+     +L+ 
Sbjct: 267 TIMQNGNVYVPAESREFVVKLFQRSDIKALIPQDSELLLAAKPDQLQDGRNYYPV-FLLR 325

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
              E++G  +  A A+F  +  +P V +  +  G  ++  +T  NIGK +A+VLDG V +
Sbjct: 326 KTAELTGGVITEAKASFSAEGAQPEVLMEMNSEGTAKWARITGANIGKRVAIVLDGAVYS 385

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           APV+   IP+G + I+G  ++E A  L  +L+AG+LP  + I+EER VG  LG+D I  G
Sbjct: 386 APVVQSKIPNGNSVINGIESVEEAKDLEIVLKAGALPAPVRIIEERTVGPSLGADYIRAG 445

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             +++ G + + +FM++ Y   G+ AD ++ LN+++ L++L+   A+L+LP IAGIVL +
Sbjct: 446 MLSLLWGFLAVSVFMLLYYHTAGIAADMALVLNILVVLSVLAGFNASLSLPGIAGIVLTM 505

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+ ERIREE    +S+  ++  G+ +A+S+I DS++T L +  +L+ FG G 
Sbjct: 506 GMAVDANVLIYERIREELADGKSIVSAVAAGYDKAFSSILDSHVTTLASAYLLYTFGIGP 565

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           ++GFA+T+ +    S+FTAI + + +  F++    +      
Sbjct: 566 IQGFAVTLMIGTAASLFTAIVVTKEIFNFMLSKNMLSEKSFG 607



 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 83/205 (40%), Gaps = 4/205 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  K   +     I     VGP +  + IR G++ ++   +A+ +++ + 
Sbjct: 404 ESVEEAKDLEIVLKAGALPAPVRIIEERTVGPSLGADYIRAGMLSLLWGFLAVSVFMLLY 463

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +     + A   L+L+I   L   A F    +L  +A ++  +G +V+  V++Y+R+R+ 
Sbjct: 464 YH-TAGIAADMALVLNILVVLSVLAGFNASLSLPGIAGIVLTMGMAVDANVLIYERIREE 522

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       S    +    ++     + + +    S   +  +G   I  FA+ +  G   
Sbjct: 523 LAD---GKSIVSAVAAGYDKAFSSILDSHVTTLASAYLLYTFGIGPIQGFAVTLMIGTAA 579

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++I +   I  F+      + +
Sbjct: 580 SLFTAIVVTKEIFNFMLSKNMLSEK 604


>gi|91782840|ref|YP_558046.1| RND family hydrophobe/amphiphile efflux pump [Burkholderia
           xenovorans LB400]
 gi|91686794|gb|ABE29994.1| hydrophobe/amphiphile efflux pump, RND family [Burkholderia
           xenovorans LB400]
          Length = 1068

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/521 (14%), Positives = 146/521 (28%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   G L       PQ  + ++P   P               +V+    
Sbjct: 8   RPVFAWIVALAIVVAGALAI-----PQLPVSQYPRLAPP-------------RIVISATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L            S    + +I  +FA     +     +  
Sbjct: 50  PGASTEVVDANVGSIIEESLDGADNMLYYETTSDSLGELEIDATFAPGTNPDLALVDIQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V  +L     +  +         ++L           +++ S  + R  + ++  +
Sbjct: 110 RLKQVEPRLPQQVVQQGISVFKAANTFLMLVALTSTDGTRDSVQLSDYLSRYVLRELKRA 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP +LR+     A+++      N +      G        
Sbjct: 170 PGVGSAQLWDA-DEALRIWLDPMKLREYGLGAAEVNAAIAAQNATVTAGTLGDAPFVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K ++                 +    +                 +       
Sbjct: 229 QLTASVSVKGQL-------------ISPAEFGQIVLKARPDGSAVRLRDVARVEVGRDNY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T        A L  G        +   N      
Sbjct: 276 SFYSRLNGKAAATVGIQLGPRGNALETSNAIRARLAALSKGLPSGVSIEIPFDNAHFVQI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T A    LV  V+++ +   ++ LV    I + ++     +   G ++ + ++
Sbjct: 336 AIHEVLVTLAEAVVLVFFVMWLFLRDLRYTLVPTVVIPVTLMGAFLAMYACGLSINVFTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +     S+    I           V 
Sbjct: 396 FGLVLAIGILVDDAIVVVESVHRVMEEEGLPPREATRKAMSQIGGAIVGVTAVLTAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + FF    GG  R FA+ M  S+L+S F A+S+  A+   +
Sbjct: 456 MAFFPGGVGGIYRQFAVAMIASMLVSSFMALSLTPALCANL 496



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 84/238 (35%), Gaps = 12/238 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V              +        +       G+++  +  +      +++ +P 
Sbjct: 260 VRLRDVARVEVGRDNYSFYSRLNGKAAATVGIQLGPRGNALETSNAIRARLAALSKGLPS 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I + +V +  + + +   +W+  +   + L     + + +   
Sbjct: 320 GVSIEIPFDNAHFVQIAIHEVLVTLAEAVVLVFFVMWLFLRDLRYTLVPTVVIPVTLMGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKS 764
                  G+  N+  +  ++  IG  V+D +VV +   R+ +        +  R+   K+
Sbjct: 380 FLAMYACGLSINVFTLFGLVLAIGILVDDAIVVVESVHRVMEE-----EGLPPREATRKA 434

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++  G  V  +       +PMA + G V      FA+ M   ++V++  ++ +   +
Sbjct: 435 MSQIGGAIVGVTAVLTAVFVPMAFFPGGVGGIYRQFAVAMIASMLVSSFMALSLTPAL 492



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 62/164 (37%), Gaps = 11/164 (6%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S +A+ + +   ++ W   L  +  + L +   +    L G+  ++     ++T+IG
Sbjct: 879  IGLSLLAVFMALAALYESWTIPLAVLMVVPLGVIGAVAAVLLRGMPNDVYFKVGMITVIG 938

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++    R    L+   +     + ++        V TS A  + V+P+ V   
Sbjct: 939  LAAKNAILIVQFARD---LHQRGLPLTRAVAEAAGARFRPIVMTSAAFLLGVVPLVVSSG 995

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA----PILLFIYDWRA 828
             G     S    +  G++ A    +  A      +    +  R 
Sbjct: 996  AGAESRRSIGTGVFGGVLAATLFGLVFAPVAFHAVASLTHGRRR 1039


>gi|163852741|ref|YP_001640784.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium extorquens PA1]
 gi|163664346|gb|ABY31713.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium extorquens PA1]
          Length = 1054

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/602 (14%), Positives = 171/602 (28%), Gaps = 43/602 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P   P               + L    
Sbjct: 8   RPVFAWVVALFILLGGALSI-----PQLPIAQYPIIAPPA-------------IALSTSY 49

Query: 63  DDF-VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
               V       +  +   L      +       +    +IT SF           +V  
Sbjct: 50  PGASVENLYTGTTRLIEDELNGAANILSFESASDSFGVVEITASFQPGTDPGYAGVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  ++       ++ +         +  +     +IR  I++I   
Sbjct: 110 RLKRVEARLPAEVRQQGILVEEASAATLNIITLVSTDGKTDEVGLGDFLIRNVINEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +LR L    A ++      N        G +   +  
Sbjct: 170 PGVGRATLY-STERALRIWIDPDKLRGLSLNAADVTKAIGRQNVQIASGAVGAQPSPERH 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              +     + + G            +       +                 I       
Sbjct: 229 AVNF----PIIVKGQ---------MTEPEAFGAIVLRANPDGSNVRLRDVARIELGGDDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +   T +        L           +      A   
Sbjct: 276 KFTTRLNGGPAAGISVTLAPDGNAIETAKAIRAKMVELSQFFPDTVKWDIPYDITPAVDA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   ++ L+    + + +  T  ++ L G ++ + ++
Sbjct: 336 SIEKVLHTLVEAVVLVFIVMFVFLQNIRYTLIPTIVVPIALFGTCTVMLLAGFSVNVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    N +      +     S+    I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMNEEGLPPKEATRKAMSQITGAIIGITLVLIAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
           + FF G      R F+I M  SI  S   A+S+  A+   +     K            F
Sbjct: 456 MAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPALCATMLKPIEKGHGHAKGGVFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
               D    ++ R   W +  S    +  + L+      +    +G + L       VD+
Sbjct: 516 NRFVDRETARYGRGVAWFIRKSGRVMLIYLVLVAGVAYAFMRLPEGFLPLEDQGFFTVDI 575

Query: 592 SV 593
             
Sbjct: 576 QT 577



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V            + +   G    +       G+++   + +     ++++  
Sbjct: 258 SNVRLRDVARIELGGDDYKFTTRLNGGPAAGISVTLAPDGNAIETAKAIRAKMVELSQFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P +   +            I K +  ++ + + + I +++  +   + L     + + + 
Sbjct: 318 PDTVKWDIPYDITPAVDASIEKVLHTLVEAVVLVFIVMFVFLQNIRYTLIPTIVVPIALF 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N+  +  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTCTVMLLAGFSVNVLTMFGMVLAIGILVDDAIVVVENV--ERIMNEEGLPPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  +  ++      +PMA + GSV      F+I M   I  +A  ++ +   +
Sbjct: 436 SQITGAIIGITLVLIAVFIPMAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPAL 492



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 75/232 (32%), Gaps = 9/232 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              V   +   + +         +G      F+G ++  +     PG +   T        
Sbjct: 784  YSVKNAQGTMVPMSSFADLKWGVGPAQIIGFNGYQSVRITGDPAPGYTSGDTIKEMERLM 843

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                           +   +   +      + V+I  + +     +   W   +  +  +
Sbjct: 844  TFLPKGFGYAWTGQSLQEKEAGSQASLLLALSVLIVFLCLA---ALYESWSIPISVLLVI 900

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L +  ++    L G+  ++     ++T+IG S  + +++ +  R   K      +    
Sbjct: 901  PLGVIGSVAAVYLRGMPNDVYFKIGLITIIGLSAKNAILIVEFARDLWK---PGTNIVQA 957

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAA 809
              ++        V TS+A    V+P+A+  G+   S       +  G++ A 
Sbjct: 958  TIQAATLRFRPIVMTSLAFIFGVVPLAIATGASSKSQQAIGTGVMGGMISAT 1009


>gi|167568097|ref|ZP_02361013.1| Hydrophobe/amphiphile efflux-1 pump, HAE1 [Burkholderia
           oklahomensis EO147]
          Length = 1045

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/589 (12%), Positives = 153/589 (25%), Gaps = 41/589 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   G+L       PQ  + ++P   P               +V+    
Sbjct: 8   RPVFAWIVALAIVVAGMLAI-----PQLPVAQYPRLAPP-------------RIVISATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG--IGVFSMRQIQNK--ITLSFADSRFKENIADKVTL 117
                  +       +   L      +   +         I ++FA     +     V  
Sbjct: 50  PGASTETVDGDVGSIIEESLDGADGLLYYETSSDGHGNLEIDVTFATGADPDLALVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ +  +L     +  +         ++L           + + S  + R  + ++  +
Sbjct: 110 RLKQIEPRLPQQVVQQGIGVFKATNTFLMLVALTSTDGTRDSAQLSDYLSRYVLRELKRA 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP +LR+       +       N +      G        
Sbjct: 170 PGVGSAQLWDA-DEALRIWLDPMKLREYGLGADDVIAAVAAQNAAVTAGAIGDAPFAAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K +++                +    +   +             +       
Sbjct: 229 QLSASVIVKGQLA-------------SPAEFGQIVLKSKPDGSVVRLADVARVELGRDDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L              + +   T        A L     P     +          
Sbjct: 276 SFSSRLNGQAAATVGIQLGPRGNALETSNAIRARLAELSKRLPPGVAVDIPFDGAHFVRI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV  V+++ +   +  LV    I + ++     +   G ++ + ++
Sbjct: 336 AIDEVVLTLVEAIVLVFGVMWLFLRDLRCTLVPTIVIPVTLMGAFVAMWAFGLSINVFTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   +      R    I           V 
Sbjct: 396 FGLVLAIGILVDDAIVVVESVHRVMEEERVSPREATRRAMKRIVGAIVGVTAVLTAVFVP 455

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF    GG  R FA+ M  S+L+S F A+S+  A+   +++             R   
Sbjct: 456 MAFFPGGVGGIYRQFAVAMIASMLVSSFMALSLTPALCANLLKPLPPGGAPARIGRRGVR 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                +  +                    LL    L Y     G +   
Sbjct: 516 GLARASTGYRSLTARTAARIGPMLAIYAVLLAFGALMYWAMPDGFLPTE 564



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 91/238 (38%), Gaps = 12/238 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V            S +        +       G+++  +  +     ++++ +P 
Sbjct: 260 VRLADVARVELGRDDYSFSSRLNGQAAATVGIQLGPRGNALETSNAIRARLAELSKRLPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +    G    R  I + ++ ++ + + +   +W+  +     L     + + +   
Sbjct: 320 GVAVDIPFDGAHFVRIAIDEVVLTLVEAIVLVFGVMWLFLRDLRCTLVPTIVIPVTLMGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKS 764
                 FG+  N+  +  ++  IG  V+D +VV +   R+ +  ++     S R+   ++
Sbjct: 380 FVAMWAFGLSINVFTMFGLVLAIGILVDDAIVVVESVHRVMEEERV-----SPREATRRA 434

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +   +G  V  +       +PMA + G V      FA+ M   ++V++  ++ +   +
Sbjct: 435 MKRIVGAIVGVTAVLTAVFVPMAFFPGGVGGIYRQFAVAMIASMLVSSFMALSLTPAL 492



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 83/253 (32%), Gaps = 16/253 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS + S   S+    ++  +     +   R         A   +  +     T
Sbjct: 785  KTGDMVPLSAIASRRWSVGPVALNRYDGYPSLDVNGRPASGHSLGAAMAEMERLAASLPT 844

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             I         E         L+      + +S +A+ + +   ++ W   L  +T + L
Sbjct: 845  GIGYDWVDAAREETVAAKQTPLL------IGLSVLAVFMALAALYESWTIPLSVLTVVPL 898

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    L G+  ++     ++T+IG S  + +++    R    L+    +    + 
Sbjct: 899  GVIGAVAAVQLRGMPNDVYFKVGMITVIGLSAKNAILIVQFARD---LHARGAALSQAVI 955

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA-- 817
             + +      V TSMA  + V+P+      G     S       G++ A    +  A   
Sbjct: 956  DAASARFRPIVMTSMAFVLGVVPLVTATGAGAESRRSIGTGAFGGVLAATLFGLVFAPIA 1015

Query: 818  -PILLFIYDWRAK 829
              ++  +     +
Sbjct: 1016 FQVVASLGRRGRR 1028


>gi|303238880|ref|ZP_07325411.1| protein-export membrane protein SecF [Acetivibrio cellulolyticus
           CD2]
 gi|302593513|gb|EFL63230.1| protein-export membrane protein SecF [Acetivibrio cellulolyticus
           CD2]
          Length = 318

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 127/311 (40%), Gaps = 11/311 (3%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            F         F  +    +   I   I     L        I             +  D
Sbjct: 1   MFDFIANKKYFFCFSGLIFLVGIIALIIHGGFNLDIQFQGGTILEIQMADSNFDIAKAAD 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++   +          +    +      + +              + +   I++   +  
Sbjct: 61  VAKTATGKVVSAQHSYTLDASNKNTRIDLLVLSVSSKDKLSDGERDELVNAISKEFKVKE 120

Query: 651 IQNTEIV--GPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWYFALGAITTLILDI 704
               E    G  +S+EL  K +  VI++ I MLIY+WIRF           +I  L+ D+
Sbjct: 121 GARIEERSVGASMSKELAGKSMWAVILACILMLIYVWIRFNAMNGLLAGFASIVALVHDV 180

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              L  +A+  I  N + +AA+LT++GYS+ND +V++DR+R+N  L     S   L +KS
Sbjct: 181 GVMLTLYAVLDIPCNESFIAAILTILGYSLNDTIVIFDRIRENSSLLRK-ESLASLTNKS 239

Query: 765 INETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I +T+ R++ T+    + V+ + ++        I  F +P+  G++    S+IFIA+P+ 
Sbjct: 240 IWQTMSRTLCTAATTGMCVIIIFIFAWYNKIDSIMEFILPLLVGMISGVYSTIFIASPVW 299

Query: 821 LFIYDWRAKNA 831
           +   +W+AK  
Sbjct: 300 VMCKEWQAKRK 310


>gi|30248183|ref|NP_840253.1| transmembrane multidrug-efflux system lipoprotein transmembrane
           [Nitrosomonas europaea ATCC 19718]
 gi|30180068|emb|CAD84068.1| probable transmembrane multidrug-efflux system lipoprotein
           transmembrane [Nitrosomonas europaea ATCC 19718]
          Length = 1048

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 160/548 (29%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  +I   GL+       P      +P  +P + +                  
Sbjct: 10  RPIFAIVLSVIIFAAGLIAI-----PLLPAGEYPEVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   + +  +E  + ++             + ++T++F      +  A +V   +  
Sbjct: 56  PKEIADSIAVPLEEAINSVEGIMYMKSVAGSDGSLQVTVTFMPGIDPDTAAVRVQNRVAQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  D ++  + T  +    ++    +       ++     +     DQ+   +   
Sbjct: 116 ALSRLPNDVRQYGVTTQKQSPTPLMYVNLSSPDGRYDSVYLRNYMTLNIKDQLSRLKGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ L     T + +       N        G            
Sbjct: 176 NVGLYGEGDYAMRLWLNPNELAARGLTASDVVDAVREQNVQVSAGQLGAEPSPQGADFLV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +       +         +    +      
Sbjct: 236 PINVRGRLRSEQ-------------EFGDIVLKSADDGQLVRLSDVGRVELGSSDYTLHA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++       A        +      T       L A   P     V          S   
Sbjct: 283 MIDNRGSTSAGIFLTPSANSLEVARTVYAKFEELAANFPPGIEYRVVWDPTVFVRDSIRA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A L LLG ++   ++ G+V
Sbjct: 343 VGQTLIEAVFLVVLVVILFLQTWRASIIPLIAVPVSIIGTFAWLYLLGYSINTLTLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +G+ VD  I+V E +     K  S   +           I    +      V + F  
Sbjct: 403 LAVGIVVDDAIVVVENVERYIEKGLSPLAAAHQAMKEVSGPIIAIALVLCAVFVPMAFLS 462

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++ +      +  +    L     
Sbjct: 463 GVTGEFYKQFAVTIAISTIISAINSLTLSPALAAKLLKGQSAPKDKLTRVLERSLGWLFH 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 PFNRLFLR 530



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 64/178 (35%), Gaps = 13/178 (7%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFA 712
                   +++ +     ++     ML ++    +   W   L  I  LI+ +      F 
Sbjct: 864  EWTDLSYQQVTQGNAAAIVFPLSIMLTFLVLAALYESWTLPLAVI--LIVPVCMCAALFG 921

Query: 713  L--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +   G + N+     ++ L+G +  + +++ +  R+   L        +   ++ +  L 
Sbjct: 922  IWFTGGDNNIFVQVGLVVLMGLACKNAILIVEFARE---LEIQGKDIVEAALEACHLRLR 978

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              V TS+A     +P+      G  V  +  I +  G++      +F+     + +  
Sbjct: 979  PIVMTSIAFIAGSVPLVFSYGAGSEVRYATGITVFAGMLGVTLFGLFLTPVFYVALRK 1036



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 57/531 (10%), Positives = 134/531 (25%), Gaps = 51/531 (9%)

Query: 11   YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISL--GLDLRGGSHLVLEVDEDDFVNG 68
                   GLL+A             P+   ++++ L  G  L  G+ L            
Sbjct: 548  IVFAVYAGLLLATVVLFHIVPTGFIPN---QDKLYLFAGAKLPEGASL--------ARTD 596

Query: 69   FLQMYSDELRSFLKKEGIGVFSM---------RQIQNKITLSFADSRFKENIADKVTLFL 119
             +    ++L S ++   +    +                 +       ++  A+ +T  L
Sbjct: 597  AVTRQLNDLASSIEGVEMTESYVGMNALQSVNTPNLAASYVILKPFDQRQRSAESITAEL 656

Query: 120  QGVNSKLNVD---PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                + +            +          L   +   +    ++  M   +  I Q   
Sbjct: 657  NAKLTDIKDGQAYALLPPSIQGLGNGSGYSLYLVDRGGLGYGVLQNVMTHFQNVIAQ--T 714

Query: 177  SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
               T         + QL  + D  + +        +                G  ++ D 
Sbjct: 715  PGMTFPVSSYQANVPQLEVKVDRVKAKAQGVNLTDLFNTLQ--------VYLGSFYINDF 766

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
            +           + G               K     +     +R         +      
Sbjct: 767  N-----------LYGRIYRVMAQADAAFRQKAEDINNLYTRNSRGEMVPLGSMVTIQHTF 815

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              D  +         +           +        + + A  LP  + +         +
Sbjct: 816  GPDPVIRYNGYPAADLIGDA--DPRVLSSGQVIAKLSQIAAEVLPRGITLEWTDLSYQQV 873

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
               +       +   L  +VL  +       L     + + +   L  +   G    +  
Sbjct: 874  TQGNAAAIVFPLSIMLTFLVLAALYESWTLPLAVILIVPVCMCAALFGIWFTGGDNNIFV 933

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              G+V+ +GLA  + IL+ E  RE   + + +  +           I  ++I  +  +V 
Sbjct: 934  QVGLVVLMGLACKNAILIVEFARELEIQGKDIVEAALEACHLRLRPIVMTSIAFIAGSVP 993

Query: 477  LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            L F    G        IT+   +L      + +     + + +      + 
Sbjct: 994  LVFSYGAGSEVRYATGITVFAGMLGVTLFGLFLTPVFYVALRKLAHFNHLK 1044



 Score = 45.8 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 60/148 (40%), Gaps = 7/148 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T  +  L G   N   +  ++  +G  V+D +VV + +    +
Sbjct: 365 WRASIIPLIAVPVSIIGTFAWLYLLGYSINTLTLFGLVLAVGIVVDDAIVVVENV---ER 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                +S      +++ E  G  +  ++      +PMA      G     FA+ +A   +
Sbjct: 422 YIEKGLSPLAAAHQAMKEVSGPIIAIALVLCAVFVPMAFLSGVTGEFYKQFAVTIAISTI 481

Query: 807 VAASSSIFIAAPILL-FIYDWRAKNARI 833
           ++A +S+ ++  +    +    A   ++
Sbjct: 482 ISAINSLTLSPALAAKLLKGQSAPKDKL 509


>gi|262279079|ref|ZP_06056864.1| cation/multidrug efflux pump [Acinetobacter calcoaceticus RUH2202]
 gi|262259430|gb|EEY78163.1| cation/multidrug efflux pump [Acinetobacter calcoaceticus RUH2202]
          Length = 1053

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 73/576 (12%), Positives = 162/576 (28%), Gaps = 42/576 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             ++ ++   I   G    L        ++R+P+  P               + +  +  
Sbjct: 10  PIFVSVIAITILIFGFFATL-----AMPVERYPNLAPP-------------SVSVVANYR 51

Query: 64  DFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                 ++      L   +K          +S     + I + F      +    +V   
Sbjct: 52  GAAADTVEESVTQILEQQIKGLDNLLYFTSYSESSGTSSIDIHFKIGTDIDKAQLQVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +    ++L  + ++  +         +++     +   +  IE S  ++      +   +
Sbjct: 112 INSALNRLPEEVQRQGVNIWKTTGDMLLIVGLYDETGKASNIELSDYMVNHFEQPLSQLQ 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +    +P++LR      + +       N        G         
Sbjct: 172 GIGEVDVFGS-SYAMRIWLNPNQLRNYQLVPSDIEQALEDYNTQIAAGSIGAMPSASDQN 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V+    +                      +    +     +      +        
Sbjct: 231 IYAKVKAGSRL-------------KTIDDFKSVVVKANIDGSLVYLKDVARVELGAENYE 277

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L +        S     +   T        A L          +    N      S
Sbjct: 278 SINTLNSYPSAGLGISLSPDANAIETSALIKEKMAQLSQHLPAGYKIVYPRDNTPFIEES 337

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV+IV+++ +   +  L+   ++ + +  T  +L L G ++   ++ 
Sbjct: 338 IKQVIITLLEAIVLVVIVMYLFLQNWRATLIPTITVPIVISGTFVVLYLFGMSINTLTLF 397

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IGL VD  I+V E +     + Q SV  +  M        +    +      + +
Sbjct: 398 ALVLAIGLLVDDTIVVVENVERLMHEQQLSVREACLMSMQEISGALVGITLVLTAVFIPM 457

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            FF    G   R F+IT+  ++L+S+F A++I  AM   +   K  K           L 
Sbjct: 458 AFFSGSTGMIYRQFSITLAAAMLLSLFVAMTITPAMCAVL-LKKHNKKPKWGQALELILQ 516

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
                  F   R     +     +  I ++      
Sbjct: 517 KVRSTFSFSSVRLIQFKVFSSLLVVGIAVILFMIYR 552



 Score = 89.4 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 99/248 (39%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  +            L        +++  + +++    ++++ +P 
Sbjct: 261 VYLKDVARVELGAENYESINTLNSYPSAGLGISLSPDANAIETSALIKEKMAQLSQHLPA 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                          E I++ I+ ++ + + ++I +++  + W   L    T+ + I+ T
Sbjct: 321 GYKIVYPRDNTPFIEESIKQVIITLLEAIVLVVIVMYLFLQNWRATLIPTITVPIVISGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                LFG+  N   + A++  IG  V+D +VV + +     ++   +S R+    S+ E
Sbjct: 381 FVVLYLFGMSINTLTLFALVLAIGLLVDDTIVVVENV--ERLMHEQQLSVREACLMSMQE 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA + GS       F+I +A  ++++   ++ I   +   + 
Sbjct: 439 ISGALVGITLVLTAVFIPMAFFSGSTGMIYRQFSITLAAAMLLSLFVAMTITPAMCAVLL 498

Query: 825 DWRAKNAR 832
               K  +
Sbjct: 499 KKHNKKPK 506



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 58/148 (39%), Gaps = 7/148 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            R+ I   +IS   + + +   ++ W      +  L L IT T+ F  +F +  ++    A
Sbjct: 864  RQAIFLYVISIFFIFLCLAALYESWKVPFIILLGLPLGITGTIIFAKIFNLPNDVYFQIA 923

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +LT IG S  + +++ +      +      S  D    ++   L   + TS+A    V+P
Sbjct: 924  LLTGIGLSCKNAILIVEFA---TQALKQGKSKIDAASDALKLRLRPILMTSLAFGAGVIP 980

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAAS 810
            +      G +      + +   +V    
Sbjct: 981  LIFATGAGAASRYEIGMSVFGSVVFGTL 1008


>gi|163853756|ref|YP_001641799.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium extorquens PA1]
 gi|163665361|gb|ABY32728.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium extorquens PA1]
          Length = 1064

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/674 (9%), Positives = 169/674 (25%), Gaps = 31/674 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+           +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLIFIGGLISLF-----AMPISEYPDVVPPSVV---------VRATFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIVETVATPIEEQINGVEGMLYMSSQATTDGVMTLTVTFRLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  +VT        ++                   +    D++   +   
Sbjct: 116 AEPRLPAIVRQLGIVTVKSSPDLTMVVHLVSPNGRYDMTYLRNYAVLNIKDRLARIDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   +   +       N      + G          Q 
Sbjct: 176 QVQLFGSGDYAMRIWLDPQKVAEHGLSAGDVVREIQAQNVEAAAGVIGASPAVPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +                 I    +      
Sbjct: 236 SLNAEGRLTSEE-------------QFSDIVVKTGENGEITRLRDIARIELGASDYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          S     +     +        ++          +          S   
Sbjct: 283 LLDNKSAVAIPISQSPGSNAIQISDEVRRTMTEIKKNMPEGVDYQIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++   G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIIGTFAVMHAFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLSPRDASYQAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   ++R        +       L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAINSLTLSPALSALLLRDHHAPKDRLTRALDTLLGWFFR 522

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                  R        + S+ S            +     +   +               
Sbjct: 523 RFNRAFGRASAGYGRGVASVVSRKGAMMVLYLVLVGVTVVLFRQIPGGFVPGQDKQYLVG 582

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            +      +    +     +  +  +     +      +     T       + +T    
Sbjct: 583 FAQLPDGATLDRTEEVIRTMSEIALKEPGVESAVAFPGLSINGFTNSSNSGIVFSTLKPF 642

Query: 659 PKISRELIRKGIVG 672
            +     +    + 
Sbjct: 643 AERKDPALSGAAIA 656



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSIIGTFAVMHAFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
                +S RD   +++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 425 A---GLSPRDASYQAMREVSGPII-AIALVLVAVFVPLAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAINSL 488



 Score = 44.3 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ L+G S  + +++ +  R+   L     S      ++    L   + TSMA  + V
Sbjct: 937  IGLIVLVGLSAKNAILIVEFARE---LEFAGRSPIQAAIEASRLRLRPILMTSMAFIMGV 993

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            LP+ +    G  +  +  + +  G++   +  +F+     + + 
Sbjct: 994  LPLVMATGAGAEMRSAMGVAVFSGMIGVTAFGLFLTPVFYVLLR 1037


>gi|258544831|ref|ZP_05705065.1| multiple transferable resistance system protein MtrD
           [Cardiobacterium hominis ATCC 15826]
 gi|258519936|gb|EEV88795.1| multiple transferable resistance system protein MtrD
           [Cardiobacterium hominis ATCC 15826]
          Length = 1068

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/684 (12%), Positives = 196/684 (28%), Gaps = 41/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL      L +  ++++P+      I L         +      
Sbjct: 8   RPVFAWVVAIFIMLGGLLS-----LYRLPVEQYPNVGAPT-IRL--------SVAYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +   + +        +        + L+FA    ++     V   L  
Sbjct: 54  AATIEESVLSVIEREMNGIDGLDYMTATAMANGTGTLELTFATGTDEDIAQVNVQNNLSK 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ-SMEIIRQRIDQIGISEST 180
           V S+L     +N +  +      +++   ++ +  S  +E  S   +R  I ++   E  
Sbjct: 114 VTSRLPSSVTQNGITVSKSSTGFLMVVTLSVKEGSSLTVEDASDYAVRNVIPELQRIEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                             P +LR    T A +S      N        G     +     
Sbjct: 174 GGVQQFGSEASM-RIWLSPEKLRGYDLTAADVSAAIAAQNRQIPAGSIGALPAIEGQTFS 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    +++ +                   +     G           I          
Sbjct: 233 ATINVPGQLANVA-------------DFENIVLKSTEGGATVRLKDVARIEIGQQTYATS 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +     +        L               +      S +
Sbjct: 280 LRLNGEASTGLAVQLSNDGNAVAVAKAVKARMNELAQYFPEGLAWSSPYDSSTFVNLSIN 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV IV+F+ +   ++ L+    + ++++  +AL+S LG ++ + ++  +
Sbjct: 340 QVLHTLVEAMVLVFIVMFLFLQNLRYTLIPTIVVPVSLLGAVALMSPLGMSINVLTMFAM 399

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E +      +  + + +      +  S I    +  ++  V + F
Sbjct: 400 VLVIGIVVDDAIVVVENVERLMVEEKLTPYQATRKSMGQISSAIVGITLVNIVVFVPMSF 459

Query: 480 F---GGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIP 535
           F    G   R FA+ M  SI  S F A+++  A+    +   +            F  + 
Sbjct: 460 FSGATGNIYRQFALVMASSIGFSGFLALTLTPALCATLLKPVRDDHHEKRGFFGWFNRMV 519

Query: 536 DCIAIQFMRARFWGVGISILFSICSIC------LLFTHGLNYGIDFKGGIQLGVLANRPV 589
                 +       + IS    +  +        +++      +  +    +      P 
Sbjct: 520 KFFTHAYEATVAKFIRISYAMFVVYLAITAGAVYIYSRLPTDFLPNEDQGFIIASIQLPA 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             +  R+  +  ++  I  Q  + E    V+     G           +K       P  
Sbjct: 580 GATAERTIEKIKEMEAILKQQPEVENVVAVQGFSFSGQGQNMGLSFITLKDWKERPEPNQ 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
           + +        +   +    I+ +
Sbjct: 640 SAKALGGRLIGMFMGISDATIIAL 663



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 52/426 (12%), Positives = 128/426 (30%), Gaps = 18/426 (4%)

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           A         +    G   D   +  +    +          L    ++   T+  S+  
Sbjct: 82  AMANGTGTLELTFATGTDEDIAQVNVQNNLSKVTSR------LPSSVTQNGITVSKSSTG 135

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
            L+   +    G       A    +  +I     I  V  +  F         +    L 
Sbjct: 136 FLMVVTLSVKEGSSLTVEDASDYAVRNVIPELQRIEGVGGVQQFGSEASMRIWLSPEKLR 195

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG------V 583
            + L    ++             SI          F+  +N                   
Sbjct: 196 GYDLTAADVSAAIAAQNRQIPAGSIGALPAIEGQTFSATINVPGQLANVADFENIVLKST 255

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V       Q    S +        L       G++VA  + ++    ++ 
Sbjct: 256 EGGATVRLKDVARIEIGQQTYATSLRLNGEASTGLAVQLSNDGNAVAVAKAVKARMNELA 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P     ++           I + +  ++ + + + I +++  +   + L     + +
Sbjct: 316 QYFPEGLAWSSPYDSSTFVNLSINQVLHTLVEAMVLVFIVMFLFLQNLRYTLIPTIVVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   +   +  G+  N+  + A++ +IG  V+D +VV + +     +    ++      
Sbjct: 376 SLLGAVALMSPLGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERLMVEEKLTPYQATR 433

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           KS+ +     V  ++   +  +PM+ + G+       FA+ MA  I  +   ++ +   +
Sbjct: 434 KSMGQISSAIVGITLVNIVVFVPMSFFSGATGNIYRQFALVMASSIGFSGFLALTLTPAL 493

Query: 820 LLFIYD 825
              +  
Sbjct: 494 CATLLK 499



 Score = 46.2 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/177 (10%), Positives = 56/177 (31%), Gaps = 30/177 (16%)

Query: 675  ISAIAMLIYIWIRFK---WYFALGAITTLILDITKTLGFFALFGIEF------------- 718
             + +A+ + +   ++     FA+  +  L      + G                      
Sbjct: 876  FTLLAVFLCLAALYESWSIPFAVLLVLPLGF-FGVSAGVMGRSSFNVFMAAMFRGPQAAR 934

Query: 719  -------NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
                   +   V  ++T++G +  + +++ +  +    L     +       + +     
Sbjct: 935  NAETFSNDTYFVIGLVTVMGLTAKNAILIIEFAKD---LQEGGRTRIQAALAAAHLRFRP 991

Query: 772  SVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             V TS+A  + VLP+    G+      +    + +G+ V     + +     + +  
Sbjct: 992  IVMTSLAFILGVLPLYFASGASSASQRAIGTTVFWGMSVGTFLGLVMIPIFFVIVRK 1048


>gi|167647042|ref|YP_001684705.1| acriflavin resistance protein [Caulobacter sp. K31]
 gi|167349472|gb|ABZ72207.1| acriflavin resistance protein [Caulobacter sp. K31]
          Length = 1045

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/516 (12%), Positives = 146/516 (28%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  ++C IGL            +   P+  P                     
Sbjct: 8   RRPVFAAVVAIILCVIGLAA-----FGSLPIRELPNVDPPVV---------SISTSYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + ++       S R  +++IT++F   R  +  A+ V   +  
Sbjct: 54  SAEVIEERITQVIERQVAGIQGIDRVNSSSRDGRSQITITFTLDRDLDAAANDVRDAVSR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L        +         IV+       +    +E +    R  ++++       
Sbjct: 114 VTSNLPDQADPPQIAKAQADSSPIVILNLTSTTL--SPLELADYADRYLVERLSTVPGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   +   L  +    +P  +     T   +       N               +     
Sbjct: 172 QAGLNG-QLYAMRIWLNPDAMAARGVTVDDVETALNNQNVELPAGALESDAKDFTIRVAR 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +                     + +   +             + +         
Sbjct: 231 SYSRPEDF------------------VKLPLRPADANGFVVRLGDVARVEEGSNERRKIF 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + ++Q +              +     P    I    N      +   
Sbjct: 273 RGNGVNQVGIFLTRQSQANDVAISRVVDKELLEINKTLPPGTQLIKAVDNSIFTAEAIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV +V  + +   +  L+      + ++ T  +L+ LG +L L ++  +V
Sbjct: 333 VWVTMGISIGLVALVNLVFLGSWRSALIPSIIAPICILSTFIILAPLGFSLNLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E I+    + +    +   G  + +  +  + I  +     L F  
Sbjct: 393 LAVGLVVDDAIVVVENIQRRVDEGEPANVAALRGTRQVFFAVVATTIVLISVFAPLMFLP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFI 514
           G   R     A+ +  ++  S   A+S+   +   +
Sbjct: 453 GYIGRLFVELAVAIAAAVGFSALLALSLSPMLASKL 488



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 54/138 (39%), Gaps = 8/138 (5%)

Query: 696  AITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            A+  L + +    G F L   G   N  +   ++ L+G +  + +++ +      +L   
Sbjct: 885  AVIMLTVPLAALGGLFGLLMTGSTINTYSQIGLIILVGIAAKNGILIVEFAN---QLRDE 941

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             +  ++ + ++    L   + TS+A  +  LP+ +W   G     +    +  G + +  
Sbjct: 942  GLKVKEAVIEAAALRLRPIIMTSIATAMGALPLMLWTGAGAGSRKTIGAVIFTGAIFSTL 1001

Query: 811  SSIFIAAPILLFIYDWRA 828
             ++FI       +  +  
Sbjct: 1002 LTLFIVPVFYNLLARFTK 1019



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 61/515 (11%), Positives = 142/515 (27%), Gaps = 41/515 (7%)

Query: 8    VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
            V+L+  +   GL   +P  L  +                G D                V 
Sbjct: 533  VVLFLALVAGGLFAVMPQELVPAEDRGRVDIAINGPEGAGFD--------YTARAAAAVE 584

Query: 68   GFLQMYSDE---LRSFLKKEGIGVFSMRQIQNKITLSFADSRF--KENIADKVTLFLQGV 122
              L+ Y  +    R+ +     G          + L     R    + +A ++   L  +
Sbjct: 585  KQLEKYRADGVASRTIIAAPRFGQNQFNTANGVLVLKDWGERDKTADQVAAELNKTLSKI 644

Query: 123  NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                 V    ++             +  ++    +  +E +  +             +  
Sbjct: 645  TG---VRAVASVRGAFQRGGGGGGGTNVDLIATGNDYVELANWLKPILAASQDNPGLSRP 701

Query: 183  RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            R+       +L  + D  +   L  +   +         S++   +           Q  
Sbjct: 702  RIDYEPTSPRLSVQIDRDKAATLGISAQSIGRVLETMFGSRRATTYIKNGQEYDVILQSS 761

Query: 243  VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            ++ +  ++ +                 V  +     A     V R               
Sbjct: 762  LDQRRSLADLDRLQVRTQSGALVPLSTVVTTQLRGDAPDRPRVDR--------------- 806

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                       +  AQ++  +T+  A          +    ++I         L +    
Sbjct: 807  -------LRSVTLTAQLAPGYTVGDAVKFFQDQAGANPSPGVSIKWGGQAKDFLEASGAV 859

Query: 363  KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                 +   LV +VL           V   ++ L  +  L  L + G+T+   S  G+++
Sbjct: 860  GIAFGLALLLVFLVLAAQFESWIHPAVIMLTVPLAALGGLFGLLMTGSTINTYSQIGLII 919

Query: 423  GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
             +G+A  + IL+ E   +   +   V  ++    +     I  ++I   +  + L  +  
Sbjct: 920  LVGIAAKNGILIVEFANQLRDEGLKVKEAVIEAAALRLRPIIMTSIATAMGALPLMLWTG 979

Query: 481  -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G G+ +     +    + S    + IV      +
Sbjct: 980  AGAGSRKTIGAVIFTGAIFSTLLTLFIVPVFYNLL 1014



 Score = 45.8 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 7/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V    E        F+     +  +   +    + VA +RV++    +I + +P 
Sbjct: 253 VRLGDVARVEEGSNERRKIFRGNGVNQVGIFLTRQSQANDVAISRVVDKELLEINKTLPP 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKT 707
            T     +     + E I +  V + IS   + +  +     W  AL       + I  T
Sbjct: 313 GTQLIKAVDNSIFTAEAIHEVWVTMGISIGLVALVNLVFLGSWRSALIPSIIAPICILST 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A  G   NL  + A++  +G  V+D +VV + +    +             +   +
Sbjct: 373 FIILAPLGFSLNLLTLLALVLAVGLVVDDAIVVVENI---QRRVDEGEPANVAALRGTRQ 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIY 824
                V T++       P+    G +   F   A+ +A  +  +A  ++ ++  +   + 
Sbjct: 430 VFFAVVATTIVLISVFAPLMFLPGYIGRLFVELAVAIAAAVGFSALLALSLSPMLASKLL 489

Query: 825 D 825
            
Sbjct: 490 K 490


>gi|298293703|ref|YP_003695642.1| acriflavin resistance protein [Starkeya novella DSM 506]
 gi|296930214|gb|ADH91023.1| acriflavin resistance protein [Starkeya novella DSM 506]
          Length = 1053

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/515 (12%), Positives = 134/515 (26%), Gaps = 33/515 (6%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +   GL +      P+  +   P             L+      L     + +   +   
Sbjct: 37  LLMAGLFVLGVACFPRLPVAPLPEVDFPT-------LQ--VSTQLPGASPEIIASSVTQP 87

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            +     +              + ITL F  +      A  V   +     +L  D    
Sbjct: 88  LERQFGEIPGLSQMTSVSTLGNSSITLQFNLNMDINAAAQLVQTAINAAGGQLPTDLPSP 147

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                       +L    +        +            +       Q L   +    +
Sbjct: 148 PTYREVNPSDPPILV-LALTSHTLPITQVDDYAENILEQHVSQIGGVGQVLVFGQQKPSV 206

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
             + DP+++  L      +    V                             +      
Sbjct: 207 RIQVDPAKVANLGLGLEDVRQAIVN--------------------LTVNNPKGIVNGTHR 246

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                 N    + KP  D                                          
Sbjct: 247 TFTIYDNDQLTSAKPWRDAILAFRNGAPVRVRDVGTAVDAPENDQLAAWANGQQAIILAV 306

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
                 +   T++        L A +       V          S    + T  I   LV
Sbjct: 307 FKLPGANVISTVDDIKAQLPSLLATAPAGVDLQVLSDRTTTIRASVMDVETTLVITVFLV 366

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           + V+F+ +      L+   ++ L VI T A +   G +L   S+ G+ + +G  VD  I+
Sbjct: 367 VAVIFVFLRSLWATLIPSVAVPLAVIGTFAAMYAFGYSLDNLSLMGLSIAVGFVVDDAIV 426

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAI 490
           + E I       ++   +   G +    TI   +++ +   + L   G   G   + FA+
Sbjct: 427 MLENIERHLEMGKTPLQAALDGSAEIGFTILSISLSLVAVFIPLLLMGGLVGKLFQEFAV 486

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           T+ ++I  S F ++++   M    ++ K  +    
Sbjct: 487 TVTITIAASAFVSLTLTPTMCALFLKAKVEEKHGR 521



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 78/249 (31%), Gaps = 12/249 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR    ++   +             + L             ++ +K ++  ++  +    
Sbjct: 277 VRDVGTAVDAPENDQLAAWANGQQAIILAVFKLPGANVISTVDDIKAQLPSLLATAPAGV 336

Query: 654 TEIVGPKISRELIRKGIVG----VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              V    +  +    +      VI   + + +        +  L     + L +  T  
Sbjct: 337 DLQVLSDRTTTIRASVMDVETTLVITVFLVVAVIFVFLRSLWATLIPSVAVPLAVIGTFA 396

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               FG   +  ++  +   +G+ V+D +V+ + +    +      +          E  
Sbjct: 397 AMYAFGYSLDNLSLMGLSIAVGFVVDDAIVMLENI---ERHLEMGKTPLQAALDGSAEIG 453

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +  S++     +P+ + GG V      FA+ +   I  +A  S+ +   +       
Sbjct: 454 FTILSISLSLVAVFIPLLLMGGLVGKLFQEFAVTVTITIAASAFVSLTLTPTMCALFLKA 513

Query: 827 R--AKNARI 833
           +   K+ R+
Sbjct: 514 KVEEKHGRL 522



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/194 (16%), Positives = 84/194 (43%), Gaps = 6/194 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +  + K  TEI   +T+  T     +  ++ +    + V+ + + + + + + ++ + 
Sbjct: 843  DAVAAIHKAETEIGKPATLVGTFQGNAQAFQDSLASEPLLVVAALLVIYVILGVLYESYV 902

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    LFG +F++ A+  V+ LIG    + +++ D   +  +  
Sbjct: 903  HPITILSTLPSAGLGALIMLWLFGFDFSIIALIGVILLIGIVKKNGIMIVDFAIE--RER 960

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +S  D I ++        + T+ AA ++ +P+ +    G  +       +  G++V+
Sbjct: 961  VEGLSPHDAIREACLLRFRPILMTTFAALLAGVPLMLGHGTGSELRQPLGYAIVGGLIVS 1020

Query: 809  ASSSIFIAAPILLF 822
               +++    I L+
Sbjct: 1021 QLLTLYTTPVIYLY 1034


>gi|237809041|ref|YP_002893481.1| acriflavin resistance protein [Tolumonas auensis DSM 9187]
 gi|237501302|gb|ACQ93895.1| acriflavin resistance protein [Tolumonas auensis DSM 9187]
          Length = 1023

 Score =  166 bits (420), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/624 (10%), Positives = 173/624 (27%), Gaps = 48/624 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L +     G+L           +   P       I++   L G         
Sbjct: 9   RRPVMTCLLMAFFTLFGILA-----YRALPVSELPQIDFPT-INVTASLSG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        S  Q   +ITL F   R  +  A  V   L  
Sbjct: 55  SPETMASAVATPLEGQLATISGIDNISSSSSQGITRITLQFDLDRNIDAAALDVQSALSS 114

Query: 122 VNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              KL  +      +  +   +  + L   + D +    +  +     +    + +    
Sbjct: 115 AQRKLPQNMTSSPSMRKSNPADAPVFLIALHSDSLPISTV--TEYAESKLAQSLSMLPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  + DP +L        +++      N ++        F   S  + 
Sbjct: 173 AQVSVYGSKPYAVRIQADPDKLTAHNLGLDELATAVADNNVNQPLGDLDGEFRSLSLKSN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +++                          +          +  +  N+          
Sbjct: 233 GQLKNAA--------------------AYRKLVVAYRNGAPLYLSSIANVLDSEENTRVA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +A  +   T++         ++         +      +   S  
Sbjct: 273 SWFIDKPGIILAVQRQAGANTISTVDAVRQALPQFQSILPDSIQMDILYDRSESIRASIH 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  +   LV++V+++ +      ++   ++ L+V+  + ++ LL  +L   S+  +
Sbjct: 333 DVQFTLLLSCALVVLVIWLFLRNLSATVIPALAVPLSVLGAVPVMYLLNYSLDNLSLLAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I++ E I     +      +   G      TI    ++ +   + L F 
Sbjct: 393 TLAVGFVVDDAIVMMENIVRHMEQGMGAMQAARKGAREIGFTILSMTLSLIAVFIPLLFM 452

Query: 481 GGGAV---RGFAITMGLSILISMFTAISIVRAMMIF--------IIRYKKMKSIDINPLS 529
           GG        FA+T+  +I +S   ++++   +             + +  + ++    +
Sbjct: 453 GGLMGRLLHEFAVTISAAIAVSGLVSLTLTPMLCSRVLRAEQTTATQGRLSQWLERGFST 512

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +       R+      +  ++  +               G I L   A    
Sbjct: 513 LTESYSVSLVAVLRHPRWVMFTFFVSMALTVLLYQQLPKDFLPSTDSGQITLTTKAAPDT 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDG 613
             + +    + +     +  N   
Sbjct: 573 SFATLSRMQQQVAEIVKADPNVAA 596



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 91/244 (37%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      P+ LS + + L+S +   ++    D     L   +    ++++    +    
Sbjct: 245 VVAYRNGAPLYLSSIANVLDSEENTRVASWFIDKPGIILAVQRQAGANTISTVDAVRQAL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            +   I+P S   +      +  R  I      +++S   +++ IW+  +     +    
Sbjct: 305 PQFQSILPDSIQMDILYDRSESIRASIHDVQFTLLLSCALVVLVIWLFLRNLSATVIPAL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L +   +    L     +  ++ A+   +G+ V+D +V+ + +   ++     +   
Sbjct: 365 AVPLSVLGAVPVMYLLNYSLDNLSLLALTLAVGFVVDDAIVMMENI---VRHMEQGMGAM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
               K   E     +  +++     +P+   GG +   +  FA+ ++  I V+   S+ +
Sbjct: 422 QAARKGAREIGFTILSMTLSLIAVFIPLLFMGGLMGRLLHEFAVTISAAIAVSGLVSLTL 481

Query: 816 AAPI 819
              +
Sbjct: 482 TPML 485



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 59/539 (10%), Positives = 148/539 (27%), Gaps = 56/539 (10%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R+  W++  + +   + +L        Q   D  PS              G   L  + 
Sbjct: 525  LRHPRWVMFTFFVSMALTVL-----LYQQLPKDFLPSTD-----------SGQITLTTKA 568

Query: 61   DEDD--FVNGFLQMYSDELRS-------FLKKEGIGVFSMRQIQNKITLSFADSRF---K 108
              D        +Q    E+         F+   G    +       +T+           
Sbjct: 569  APDTSFATLSRMQQQVAEIVKADPNVAAFMSSVGSTGPNGSANGGSMTIRLVPREQRLSA 628

Query: 109  ENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168
            + +  ++   +  +   L+V  +    +       +            +   +     + 
Sbjct: 629  DQVIAELRQKVNHI-PGLSVYLRNPPSIRIGGMSTASEYQFTVQSNDFNELTQWHDRFLT 687

Query: 169  QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
                  G+ + T  +      L       D  +L     T +++         +++    
Sbjct: 688  AIRAIPGLRDVTSDQEVVGAGLSV---AVDRDKLASYGLTYSQVETALQSAFAARQVSTI 744

Query: 229  GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 + +   + L E                   +    +  I             T  
Sbjct: 745  YADTDQYAVILEVLPER-----------------QQQAADLSRIRVRNNDGVLISLDTVA 787

Query: 289  NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
            +  +    +    + T P    +         G    +    L  +      P  +    
Sbjct: 788  SFKRQPQTLTVNHLGTLPAATISFNMSSGMALG----DALKALDQVKEELLPPASVVTSL 843

Query: 349  ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
            + +  A   S S       +   +V  VL M+       L     +    +  L  L L 
Sbjct: 844  QGSAAAFASSQSGMMVLLVLALLVVYGVLGMLYESFVHPLTILSGLPSAGLGALLTLWLF 903

Query: 409  GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
               +TL +  GI+L IG+   + I++ +   +  R   +   ++       +  I  ++I
Sbjct: 904  QFPVTLYAFVGILLLIGIVKKNAIMMIDFALDRERDGMTPDDAIHQACLVRFRPIMMTSI 963

Query: 469  TALIATVVL---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
             AL   + +   +  G    +   +++   +L+S    + +   +  ++  +    +  
Sbjct: 964  AALAGALPIALGYGAGAELRQPLGVSIVGGLLLSQIVTLYLTPVIYHYLAPWHAKLNFR 1022



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 6/148 (4%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   +   L  ++ L       L    LF     L A   +L LIG    + +++ D  
Sbjct: 874  MLYESFVHPLTILSGLPSAGLGALLTLWLFQFPVTLYAFVGILLLIGIVKKNAIMMIDFA 933

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
               +      ++  D I ++        + TS+AA    LP+A+    G  +     + +
Sbjct: 934  ---LDRERDGMTPDDAIHQACLVRFRPIMMTSIAALAGALPIALGYGAGAELRQPLGVSI 990

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAK 829
              G++++   ++++   I  ++  W AK
Sbjct: 991  VGGLLLSQIVTLYLTPVIYHYLAPWHAK 1018


>gi|332702918|ref|ZP_08423006.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332553067|gb|EGJ50111.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 1041

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 74/534 (13%), Positives = 156/534 (29%), Gaps = 31/534 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++  +GL+  L        + ++P  +P   +  G  + G   L +E   
Sbjct: 8   RPIVAMVISIILVIVGLVSML-----GLPIAQYPDIVPPEVLISGTYI-GADALTVEQSV 61

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +        S +                 + ++FA             +    
Sbjct: 62  ATPIEQQM--------SGVDNMNYMNSISSSDGRMSLRVNFAVGTDPNTDQVLAQMRQSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   +  T      +++               +        DQ+       
Sbjct: 114 AESQLPAEVRDYGVTVTKSTASPLMVIALTSPDGAYDETFLANYAYINLNDQLLRVPGIS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    +P  L +L  T  ++       N        G   +       Y
Sbjct: 174 QVTIFGAGQYSMRLWVNPDTLARLNITVPEIISAVQAQNTVNPAGRIGDEPVPAGQDFTY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  ++                +    +                       V     
Sbjct: 234 TVRAKGRLT-------------TPEEFEQIVVRANPDGSIVRIKDVARAELGAQVYNLKG 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +    L A       P    ++              
Sbjct: 281 RLDGQPAAAIAVYQLPGSNAIQAADGVRRLMAEQAERFPPGLEFVLALDTTLPITEGIDE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LVLIV+F+ +   +  L+   ++ +++I T A+  LLG T+   S+ G+V
Sbjct: 341 IVQTLFEAMLLVLIVVFIFLQSFRATLIPMVAVPVSLIGTFAVFPLLGFTINTLSLLGLV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +     +  S   +           +  +++  +   V   F  
Sbjct: 401 LAIGIVVDDAIVVVEAVEHHISQGLSPREATLQAMREVTGPVVVTSLIMVAVFVPTVFIP 460

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
              G   + FA+T+ +S++IS   A+++  A+   ++R +K     +    R F
Sbjct: 461 GITGRLYQQFAVTIAVSVVISSINALTLSPALSALLLRPRKEMRGPLGWFFRKF 514



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 83/261 (31%), Gaps = 10/261 (3%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                                +   Q+ V AN    +  ++    +     +       +
Sbjct: 224 PVPAGQDFTYTVRAKGRLTTPEEFEQIVVRANPDGSIVRIKDVARAELGAQVYNLKGRLD 283

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                 +           +  + V++ + E           ++    +  +       V 
Sbjct: 284 GQPAAAIAVYQLPGSNAIQAADGVRRLMAEQAERFPPGLEFVLALDTTLPITEGIDEIVQ 343

Query: 675 ISAIAMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
               AML+ + + F     +   L  +  + + +  T   F L G   N  ++  ++  I
Sbjct: 344 TLFEAMLLVLIVVFIFLQSFRATLIPMVAVPVSLIGTFAVFPLLGFTINTLSLLGLVLAI 403

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +VV + +       +  +S R+   +++ E  G  V TS+      +P     
Sbjct: 404 GIVVDDAIVVVEAV---EHHISQGLSPREATLQAMREVTGPVVVTSLIMVAVFVPTVFIP 460

Query: 791 GSVIG---SFAIPMAFGIVVA 808
           G        FA+ +A  +V++
Sbjct: 461 GITGRLYQQFAVTIAVSVVIS 481



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 49/147 (33%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +    + +        L G+E N+ A   ++ LI  +  + +++ +  +   
Sbjct: 894  SWSLPFSVLLGTPIAVFGAFAALWLRGLESNVYAQIGLVMLIALAAKNAILIVEFAK--- 950

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMAFGI 805
              +       +    +    L   + TS A  +  +P+    G   +        +  G+
Sbjct: 951  LEHEQGKPLIEAALGAARLRLRPILMTSFAFILGCIPLWTAAGAGALSRRVIGTDVVGGM 1010

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    +F+   + + +     +  R
Sbjct: 1011 LAATLLGVFLVPMLYVLVQGLSERVGR 1037


>gi|218676023|ref|YP_002394842.1| Protein-export membrane protein SecD [Vibrio splendidus LGP32]
 gi|218324291|emb|CAV25605.1| Protein-export membrane protein SecD [Vibrio splendidus LGP32]
          Length = 595

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 148/505 (29%), Positives = 262/505 (51%), Gaps = 40/505 (7%)

Query: 36  PSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
           PS +       I  GLDLRGG   +L+VD     N   Q   D+LR   +  G      R
Sbjct: 114 PSWLTSLGFQPIKFGLDLRGGVQFLLDVDLVPVFNAHAQSVIDDLRQEFRVRG------R 167

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
               ++ ++  +     +I   +                 N  ++ + + + I + +   
Sbjct: 168 VENGEVVIARYNEALLGDIRTHLRTQY------------PNWTLSQSGERLMISMDEEEK 215

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
             + +  + Q+++ +R RI+++GI+E+ +QR G +RI I+LPG QDP+  + ++G TA +
Sbjct: 216 RAIRTLTVTQNLQTMRGRIEELGITEAAVQRQGENRIRIELPGVQDPTSAKNIIGATASL 275

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
           +F+ V PN S +      + + D DG   ++     + G H+  A A+       P V+I
Sbjct: 276 AFYHVEPNVSAR-----TKSINDQDGRPVILHRNSILGGEHIIDARASLGELGT-PEVNI 329

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGR------------VLTAPVINQAIPSGKAQIS 320
           + D  G R     +R NIG P+A +                 + +    Q+    + +I+
Sbjct: 330 TLDSTGGRLMTNHSRSNIGNPMATLYSEYSQSETGQSIEQSEVISVATIQSTLGNRFRIT 389

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
           G  ++  A  LA +LRAGSL   + IVEER +G  LG++++  G  A+  GL   ++F+ 
Sbjct: 390 GAGSMADAQNLALLLRAGSLTAPVTIVEERTIGPTLGAENVKNGFAALALGLGFTLVFIA 449

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
             Y + G VA+ ++ +N++    LL+L+  A LTLP IAG+VL +G+AVD+N+L+ ERI+
Sbjct: 450 CWYRRLGWVANAALTINLVCLFGLLALIPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIK 509

Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
           ++ R+ ++   ++D GF  A+S+IFD+N+T +I  + L+  G G ++GFAIT+GL +L S
Sbjct: 510 DKMREGRNFSQAIDRGFDSAFSSIFDANLTTMIVAIALYAIGNGPIQGFAITLGLGLLTS 569

Query: 500 MFTAISIVRAMMIFIIRYKKMKSID 524
           +FT +   R ++ ++        + 
Sbjct: 570 LFTGVFASRILINYLWGRDTSHEVK 594



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 75/172 (43%), Gaps = 5/172 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            +GP +  E ++ G   + +     L++I   ++      A   L +++    G  AL  
Sbjct: 420 TIGPTLGAENVKNGFAALALGLGFTLVFIACWYR-RLGWVANAALTINLVCLFGLLALIP 478

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A ++  +G +V+  V++++R++  M+      +F   ID+  +        
Sbjct: 479 GAVLTLPGIAGLVLTVGMAVDTNVLIFERIKDKMRE---GRNFSQAIDRGFDSAFSSIFD 535

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++   I  + +   G   I  FAI +  G++ +  + +F +  ++ +++  
Sbjct: 536 ANLTTMIVAIALYAIGNGPIQGFAITLGLGLLTSLFTGVFASRILINYLWGR 587


>gi|307152586|ref|YP_003887970.1| protein-export membrane protein SecF [Cyanothece sp. PCC 7822]
 gi|306982814|gb|ADN14695.1| protein-export membrane protein SecF [Cyanothece sp. PCC 7822]
          Length = 312

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/305 (23%), Positives = 144/305 (47%), Gaps = 14/305 (4%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL------NYGIDFKGGIQLGVLANRPVDL 591
           + +   + R     IS + +I SI  +              +DF GG ++ +  +  V  
Sbjct: 1   MKLNVTKNRGLWWTISGVATIISIIAMIVSFATIKAPLRPSLDFVGGTKIQLELDCSVPN 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLV---RLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +  ++         ++ Q        ++    L  +  D   + R     +         
Sbjct: 61  NCTQAISSGSVQDILTAQGLGNSSVQVIDKYALSIRTQDLNVEQRTQLQKQLNEKIGTFN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                 + VGP I REL   G++ +++S   + +Y+  RF++ +A+ A+  L  D   T 
Sbjct: 121 VETIQIDTVGPTIGRELFTAGLLALLVSFFGITVYLSFRFQFDYAVIAVLALFHDTFITT 180

Query: 709 GFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           G FA+ G+    E +   + A+LT+IG+SVND V++YDRMR+ +      +S   + D +
Sbjct: 181 GVFAILGLVLGVEVDSLFLVALLTIIGFSVNDTVIIYDRMRE-IATKNPELSINQVADDA 239

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +++TL RS+ T++   + +  + ++GG  +  FA+ +  G ++ A SSIF+A+P++ +  
Sbjct: 240 VDQTLTRSINTTLTTLLPLTSIFLFGGPTLKYFALALIVGFILGAYSSIFLASPLVAWWR 299

Query: 825 DWRAK 829
           + + K
Sbjct: 300 ERQEK 304


>gi|254563730|ref|YP_003070825.1| RND efflux transporter [Methylobacterium extorquens DM4]
 gi|254271008|emb|CAX27014.1| RND efflux transporter, hydrophobe/amphiphile efflux-1 (HAE1)
           family [Methylobacterium extorquens DM4]
          Length = 1064

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/548 (10%), Positives = 148/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+           +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLIFIGGLISLF-----AMPISEYPDVVPPSVV---------VRATFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIVETVATPIEEQINGVEGMLYMSSQATTDGVMTLTVTFRLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  +VT        ++                   +    D++   +   
Sbjct: 116 AEPRLPAIVRQLGIVTVKSSPDLTMVVHLVSPNGRYDMTYLRNYAVLNIRDRLARIDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   +   +       N      + G          Q 
Sbjct: 176 QVQLFGSGDYAMRIWLDPQKVAEHGLSAGDVVREIQAQNVEAAAGVIGASPAVPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +                 I    +      
Sbjct: 236 SLNAEGRLTSEE-------------QFSDIVVKTGENGEITRLRDIARIELGASDYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          S     +     +      A ++          +          S   
Sbjct: 283 LLDNKSAVAIPISQSPGSNAIQISDEVRRTMAEIKKNMPEGVDYQIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A++   G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIIGTFAVMHAFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLSPRDASYQAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   ++R        +       L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAINSLTLSPALSALLLRDHHAPKDRLTRALDTLLGWFFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 RFNRAFGR 530



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSIIGTFAVMHAFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
                +S RD   +++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 425 A---GLSPRDASYQAMREVSGPII-AIALVLVAVFVPLAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAINSL 488



 Score = 44.7 bits (103), Expect = 0.076,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 43/104 (41%), Gaps = 6/104 (5%)

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ L+G S  + +++ +  R+   L     S      ++    L   + TSMA  + V
Sbjct: 937  IGLIVLVGLSAKNAILIVEFARE---LEFAGRSPIQAAIEASRLRLRPILMTSMAFIMGV 993

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            LP+ +    G  +  +  + +  G++   +  +F+     + + 
Sbjct: 994  LPLVMATGAGAEMRSAMGVAVFSGMIGVTAFGLFLTPVFYVLLR 1037


>gi|261414890|ref|YP_003248573.1| acriflavin resistance protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261371346|gb|ACX74091.1| acriflavin resistance protein [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302328008|gb|ADL27209.1| transporter, AcrB/AcrD/AcrF family [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 1018

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 76/691 (10%), Positives = 181/691 (26%), Gaps = 52/691 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++  +I  +G        L    +  +P+                        
Sbjct: 9   RRPVLMTVMALVILLLGFF-----GLSSLGIREYPNVDYPLIQ---------VRTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +   +          + R   + I++ F      E  A+++   +  
Sbjct: 55  NAAVVEAEVTEILEASINSASGIKALTSTSRDGFSYISIEFETGMDLEAAANEIRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D  +  +  +      I++     D+     +E S        +++       
Sbjct: 115 VRRRLPDDVDEPTVYKSDSDSDPILMVSLVSDKF--DPMEVSEIANNHVKERLQTINGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP R++ L  + A+M+                        GN  
Sbjct: 173 EVAIWGEKRPVVRLWIDPVRMQALGVSGAQMAAALK-------------------QGNLE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L    +E S   L+  T                              +I         G 
Sbjct: 214 LPSGSIEGSETTLSIRTLGRVLDPKSFGNIAVRTAEDGTVIRISDVADIHYEPKDTRTGF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +              +R         +           S   
Sbjct: 274 RRNGKNSITLALMAQPGSNHVEIANEFYKRVEDIRREIPEGVELLYGRDTSINIRASIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+ ++F  +  G+   +    + ++VI +  +L L G ++ + ++  +V
Sbjct: 334 VVETIFIAFILVIAIIFAFLREGRTTFIPMVVVPVSVIGSFFVLYLCGFSINVLTLLAMV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I  +     +   +   G +  +  +  +++  +   + +   G
Sbjct: 394 LAIGLVVDDAIVIVENIYHKIESGMTPKQAAIAGTNEIFFAVIATSVVLMAVFIPVLALG 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLIP 535
           G      R F   M  ++ +S   A+++   +        +      +          + 
Sbjct: 454 GTTGLLFREFVAVMIGTVFLSTLCALTLSPMLCSKFLKHQKKGAFFKLTEPFFDWLNGMY 513

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---------DFKGGIQLGVLAN 586
             +   F++ R     I       +                      +      + +   
Sbjct: 514 SRLLGGFLKWRLLLFPIVAALLFGAYYCFNNMSSEMAPTEDSNAVMVNMSMPEGVNLSRT 573

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + +    V      L   + +            R++    D     R    + + I  + 
Sbjct: 574 KRMADEFVDEVTSILDSNEYTEFQAGAWNAGNSRMRLFLNDDKKARRPQSEIARAIQVLG 633

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
                    +  P       ++G + V    
Sbjct: 634 NEYPDLRVMVFEP--QSISTQRGGLPVQFVL 662



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 85/264 (32%), Gaps = 10/264 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           +D K    + V       +  +    +       +   F       + L           
Sbjct: 235 LDPKSFGNIAVRTAEDGTVIRISDVADIHYEPKDTRTGFRRNGKNSITLALMAQPGSNHV 294

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYI-WIRF 688
            +     K++ +I          + G   S  +   I++ +  + I+ I ++  I     
Sbjct: 295 EIANEFYKRVEDIRREIPEGVELLYGRDTSINIRASIKEVVETIFIAFILVIAIIFAFLR 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +       +  + + +  +     L G   N+  + A++  IG  V+D +V+ + +    
Sbjct: 355 EGRTTFIPMVVVPVSVIGSFFVLYLCGFSINVLTLLAMVLAIGLVVDDAIVIVENI---Y 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
               + ++ +       NE     + TS+      +P+   GG+       F   M   +
Sbjct: 412 HKIESGMTPKQAAIAGTNEIFFAVIATSVVLMAVFIPVLALGGTTGLLFREFVAVMIGTV 471

Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829
            ++   ++ ++  +       + K
Sbjct: 472 FLSTLCALTLSPMLCSKFLKHQKK 495



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 2/138 (1%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +        T+ L ++  L    + G   N+ +  A++ LI     + +++ +    N 
Sbjct: 871  SFRAPFVIFFTVPLALSGALVSLFVTGQTLNIFSEIALILLIALVTKNGILIVE--FANQ 928

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                T  S  +    +        + TS++  +  +P+ + G     +  + +  G+  A
Sbjct: 929  IAENTGCSKLEAARMAAERRFRPILMTSLSTVLGAVPLILTGTPSRIAMGVAIVGGLTFA 988

Query: 809  ASSSIFIAAPILLFIYDW 826
               ++FI      F    
Sbjct: 989  TFMTLFIVPAAYSFFAGK 1006


>gi|34497431|ref|NP_901646.1| NolG efflux transporter [Chromobacterium violaceum ATCC 12472]
 gi|34103286|gb|AAQ59648.1| NolG efflux transporter [Chromobacterium violaceum ATCC 12472]
          Length = 1039

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/522 (10%), Positives = 147/522 (28%), Gaps = 39/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  +  +L   +  +GL         +  ++  P       +                 
Sbjct: 9   RNPYFAAVLMMTLMVLGLFS-----WQKLAVEEMPDVRLPMAV---------VETRYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E  + +           +  + +   F  S         V   +  
Sbjct: 55  SPEVVESEVSKPLEEALNTVNGIKEIRSYSSEGSSFVVAEFELSVDPIVAVQNVRDKVAS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +   +     +      +    +   ++    +   E S         ++ + E   
Sbjct: 115 VQGQFRREIGTPSVSQVDPNDKP--MLSLSLTSSQTRPRELSSWAENVLKKRLQMVEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++  + DP RL     + A ++      N               +     
Sbjct: 173 DVSLIGAVKREIRIDIDPVRLEGSGLSLADVADAIKAANQDFPAGNVSTAHKEWAIRVSG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                     ++                +    A      
Sbjct: 233 KLKSADDFAA--------------------LAVGYRNGTPIRLDDIAAVADTQAEQDSVS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++                +          L   L+              +      + S 
Sbjct: 273 LVNGQPGLGVDVKAARGANEVAVAAGVKKLLTELKPQMPAGTELRYTYDSAEDVKKALSS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +      AGL ++++F+ +   +  ++   ++ + ++ TL  + L+G TL + ++  + 
Sbjct: 333 VESMLLEGAGLTILIVFLFLGSWRSTVITGLTLPVALVGTLFAMQLMGFTLNMLTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +S + +   G +     +  + +T +   + + F  
Sbjct: 393 LSIGLLIDDAIVVRENIVRHAALGKSHYQAALDGTNEIGLAVLATTLTVVAVFLPVGFMS 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              G     F +T+ +++LISMF + S+   +          
Sbjct: 453 GIIGRFFHQFGLTVAVAVLISMFVSFSLDPMLSSIWHDPHHH 494



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 85/248 (34%), Gaps = 9/248 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                P+ L  + +  ++    D            +     +  + VA    ++ +  ++
Sbjct: 247 YRNGTPIRLDDIAAVADTQAEQDSVSLVNGQPGLGVDVKAARGANEVAVAAGVKKLLTEL 306

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLI 701
              +P  T         +  ++ +      ++  + + +LI       W   +    TL 
Sbjct: 307 KPQMPAGTELRYTYDSAEDVKKALSSVESMLLEGAGLTILIVFLFLGSWRSTVITGLTLP 366

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDL 760
           + +  TL    L G   N+  + A+   IG  ++D +VV    R+N+  +     S    
Sbjct: 367 VALVGTLFAMQLMGFTLNMLTLLALSLSIGLLIDDAIVV----RENIVRHAALGKSHYQA 422

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
                NE     + T++      LP+    G +      F + +A  ++++   S  +  
Sbjct: 423 ALDGTNEIGLAVLATTLTVVAVFLPVGFMSGIIGRFFHQFGLTVAVAVLISMFVSFSLDP 482

Query: 818 PILLFIYD 825
            +    +D
Sbjct: 483 MLSSIWHD 490



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 81/224 (36%), Gaps = 12/224 (5%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A + V LS +    + +    I   N   E + L  ++ +   S        +   ++ +
Sbjct: 780 AAQMVPLSTLIETRQGVSPRQIKRTNMMREISILANVEGRDVGSAMADIDKLLDGTQLPQ 839

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
            V        + +   +        +  + +  I + + +  +F+ +   +  +  L L 
Sbjct: 840 GVQRMHRGQQKDMEETVG-----NALRALGLGVIFIYLILAAQFRSFTMPVTIMVALPLA 894

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                    L+G   N+ ++  ++ L+G    + +++ D +    +     ++  D I +
Sbjct: 895 FGGVFVALFLWGSTLNMFSIIGIIMLMGLVAKNGILLVDFIN---RARQDGMAREDAIVE 951

Query: 764 SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
           +    L   + TS+A    +LP+A+    G       A  +  G
Sbjct: 952 AGRVRLRPIMMTSLAMIFGMLPLALGTGDGSETNRPMAHAIIGG 995


>gi|116748517|ref|YP_845204.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697581|gb|ABK16769.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Syntrophobacter fumaroxidans MPOB]
          Length = 1065

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/694 (11%), Positives = 193/694 (27%), Gaps = 48/694 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++ S+I   GL+      +    + ++P+  P               + +    
Sbjct: 9   RPIFATVVSSIIVIAGLVS-----MKALPVSQYPTITP-------------VQIQVTTTY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
               +  +    +  + + +        +   S    Q  IT+ F      +    +V  
Sbjct: 51  PGADSKTVGDSVAAPIEAQINGVDNMLYMISTSSNTGQLTITVYFTLDTDPDIAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L     +  +         ++L   +           +       +D I   
Sbjct: 111 RVNLAMPQLPEAVAQYGVAVQKNSTTWLMLIGVSNKDGRYSPDYVANYANVYVLDAIKRV 170

Query: 178 ESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
               Q           +    +P R+  L  TT+ +       N        G +   +S
Sbjct: 171 NGAGQSQVYYDVPDQAMRIWMNPDRMASLGITTSDIQQAVAQQNALYGAGQIGQQPSDES 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               + V  +              F        + +     G+          +      
Sbjct: 231 VELTFPVVTQ------------PPFIQPRQYEDIILRAGPDGSALVRLNDVARVEVGRKQ 278

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
            +    L            +   +     +        L+          +         
Sbjct: 279 YIQDTRLDGIPATIIAVYQQPGANALAVCKAVRQTLDELKRTMPSGIECTIALDTTDFVR 338

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+++ +   +  ++   +IF+ +I T   +  +G ++ L +
Sbjct: 339 LSIEEIIHTLIAAVILVVLVVYLFLQSFRATVICSVAIFVALIGTFPGMLAMGFSINLLT 398

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFS---RAYSTIFDSNITALI 472
           + G++L IG+ VD  I+V E +     K   +   +          +   +     +  I
Sbjct: 399 LFGLILAIGMVVDDAIVVVENVERNMVKYHLTPREATIRSMEQIGTSLIAVVLVMASVFI 458

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
               L    G   + FA+T+ +S+ +S F A+++  AM   +++++              
Sbjct: 459 PAAFLPGTTGQLYKQFAVTIVISVALSGFVALTLTPAMCGVLLKHRPPPQRGPFAWFNRQ 518

Query: 533 LIPDC--------IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                          I+ M   F  + + I         + T  +             + 
Sbjct: 519 FDRFTAVFGDAVVFMIRRMGVAFVLLAVFIGGLAYLFRTIPTSFVPNEDQGYLFPVFVLP 578

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               ++ +   + +                 N    L  Q  ++ A   ++    K+   
Sbjct: 579 DASSINRTSAATEILDELFARNPAVEHRVVLNGFSVLDLQTKNNAATLFIMLKDFKERYA 638

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
               +  ++   V   ++ E   +   GV++   
Sbjct: 639 SGDRAAKESARAVFENVAAEARSRFATGVLLPLF 672



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 55/147 (37%), Gaps = 5/147 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   +     + + +  T       G   NL  +  ++  IG  V+D +VV + + +NM
Sbjct: 365 SFRATVICSVAIFVALIGTFPGMLAMGFSINLLTLFGLILAIGMVVDDAIVVVENVERNM 424

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
             Y   ++ R+   +S+ +     +   +      +P A   G+       FA+ +   +
Sbjct: 425 VKY--HLTPREATIRSMEQIGTSLIAVVLVMASVFIPAAFLPGTTGQLYKQFAVTIVISV 482

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++   ++ +   +   +   R    R
Sbjct: 483 ALSGFVALTLTPAMCGVLLKHRPPPQR 509



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 55/122 (45%), Gaps = 4/122 (3%)

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + S I + + +  +F+ W      +T +   I     F  L G+E ++     +L LI
Sbjct: 881 AFVFSLIIVFLVLAAQFESWTLPGSVMTAVPFGILGAFIFNWLRGLENDVYFQIGLLVLI 940

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G    + V+   R+   ++L    +S  D   K+  E L   + TS+A  + VLP+A+  
Sbjct: 941 GLGAKNAVL---RVTFAVELRRQGLSIMDATIKAGEERLRPIIMTSLAFILGVLPLAIAT 997

Query: 791 GS 792
           G+
Sbjct: 998 GA 999


>gi|224588239|gb|ACN58863.1| putative transmembrane multidrug-efflux system lipoprotein
           transmembrane [uncultured bacterium BLR13]
          Length = 1122

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/549 (12%), Positives = 147/549 (26%), Gaps = 32/549 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I  +GLL        Q  +  +P   P   +                  
Sbjct: 35  RPRFATVLSIFIFMVGLLAIF-----QLPISEYPEVAPPQIV---------VRAQFPGAN 80

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              ++  +    +E  + L+             +  +T++F      E     V   +  
Sbjct: 81  PRVISETVAAPLEEQINGLEHMLYFESQATADGSMTLTVTFKIGTVPEQAETAVQNRINR 140

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + T  +     ++           A+           D +       
Sbjct: 141 ALPRLPDIVRQIGVTTEKQSPNLTMVVHMVSPDNSHDALYLRNYANLNVRDDLLRISGMG 200

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L        +    +P +L     T   +       N      + G     +    Q 
Sbjct: 201 SVLLFGSGDYAMRIWLNPRQLAARNMTAGDVVTAIREQNAQVAAGVVGSPPAPNDTDFQL 260

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +              +     + +  D              +           
Sbjct: 261 QVNARGRL------------IKEEDFADIIVRGDPATGALVRIKDIGRVEISANSYSLRS 308

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +               +          +          S   
Sbjct: 309 LLNNKEAAAIGIFQAPGSNALKLSNDVRATMENAKKSFPKGVDYDIVYDPTRFVQTSIEK 368

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T A+L LLG ++   ++ G+V
Sbjct: 369 VVHTLIEAVLLVVLVVIIFLQTWRASVIPLLAVPVSIIGTFAMLLLLGYSINTLTLFGLV 428

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +           I    +      + L F  
Sbjct: 429 LAIGIVVDDAIVVVENVERNIADGLTPHDATVRAMREVSGPIVAIALVLCAVFIPLTFVP 488

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLIPD 536
              G   + FA T+ +S +IS F ++++  A+   ++R        I +     F     
Sbjct: 489 GLSGQFYKQFAATIAISTVISAFNSLTLSPALAALLLRPHDAPKDKIMVVMDKLFGRFFH 548

Query: 537 CIAIQFMRA 545
                F R 
Sbjct: 549 WFNCMFQRR 557



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 57/151 (37%), Gaps = 13/151 (8%)

Query: 689  KWYFALGAITTLILDIT-KTLGF-FALF-----GIEFNLTAVAAVLTLIGYSVNDKVVVY 741
             W   L  I  + + I     G   + F     G + NL    A++ L+G +  + +++ 
Sbjct: 941  SWSLPLAIIMIVPMCILSALFGVWMSHFPPFSQGGDLNLFTQVALVVLVGLACKNAILIV 1000

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFA 798
            +  ++   L        D I  + +  L   + TS+A    V+P+ +    G  +  +  
Sbjct: 1001 EFAKE---LEEQGQPMMDAIVNACHLRLRPILMTSIAFCAGVIPLILGSGAGSEMRRAMG 1057

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            I +  G+V   S  IF+       +     K
Sbjct: 1058 IAVFSGMVGVTSFGIFLTPVFYSLLRKSTEK 1088



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 83/228 (36%), Gaps = 7/228 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  +     S     +     + E   +   Q    +++  +  +    +   +  P 
Sbjct: 289 VRIKDIGRVEISANSYSLRSLLNNKEAAAIGIFQAPGSNALKLSNDVRATMENAKKSFPK 348

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTLILDITKT 707
               +      +  +  I K +  +I +  + +L+ I     W  ++  +  + + I  T
Sbjct: 349 GVDYDIVYDPTRFVQTSIEKVVHTLIEAVLLVVLVVIIFLQTWRASVIPLLAVPVSIIGT 408

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N   +  ++  IG  V+D +VV + + +N+      ++  D   +++ E
Sbjct: 409 FAMLLLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNIAD---GLTPHDATVRAMRE 465

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
             G  V  ++      +P+       G     FA  +A   V++A +S
Sbjct: 466 VSGPIVAIALVLCAVFIPLTFVPGLSGQFYKQFAATIAISTVISAFNS 513


>gi|261212453|ref|ZP_05926738.1| protein-export membrane protein SecF [Vibrio sp. RC341]
 gi|260838384|gb|EEX65040.1| protein-export membrane protein SecF [Vibrio sp. RC341]
          Length = 300

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 143/279 (51%), Gaps = 6/279 (2%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R+    IS+L  + S+      GLN G+DF GG+      NR V    +   L+      
Sbjct: 13  RYVTGIISLLLMVISLGAFAIKGLNMGLDFTGGMVTEATINRSVSKVQLLEKLQPTLGES 72

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           +S      +  +++R         A+      +  ++ +I     I +  +VG ++ +EL
Sbjct: 73  VSVTPSGEDGRWVIRYPLP-----AENSTPVDIAAELHQISDQVQIVSNSMVGSQVGQEL 127

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           + +G + ++I  +++L Y+  RF+W  A GA+  L+ D+   LGFFA+  +EFNLT  AA
Sbjct: 128 VDQGGLALLICLLSILGYLSFRFEWRLASGALLALLHDVVLVLGFFAITQMEFNLTVFAA 187

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           VL ++GYS+ND +++ DR+R+ + L        ++ D++I  T  R++ TS    +++  
Sbjct: 188 VLAVLGYSLNDSIIIADRIRE-LLLAKQQTPTAEINDQAIIATFSRTMVTSGTTLMTISA 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + GG+ +  FAI M  G++    SSI I   +  ++ 
Sbjct: 247 LWLMGGAPLQGFAIAMFIGVISGTWSSISIGTVLPEWLG 285


>gi|254432540|ref|ZP_05046243.1| RND transporter, HAE1 family [Cyanobium sp. PCC 7001]
 gi|197626993|gb|EDY39552.1| RND transporter, HAE1 family [Cyanobium sp. PCC 7001]
          Length = 1142

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 72/519 (13%), Positives = 154/519 (29%), Gaps = 33/519 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I   GL+       P   ++  P   P                +    +
Sbjct: 10  RPVLTTVCSLIIVIAGLISI-----PVLPIENLPDIAPPTV---------NVSSLYSGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++       S      ++IT+SFA     +     V   +  
Sbjct: 56  AITVEQGVTNVLEQQINGVENMDFITSSSSADGRSEITVSFASGTNGDINQVNVQNRVAL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV---ISHAIEQSMEIIRQRIDQIGISE 178
            N  L  + +++ +V        +++     +        A   S  + +   + IG   
Sbjct: 116 ANPSLPDEVRQSGVVVNKASNQILLVYNFVSEDPDTISYSAETISGLLDQNLTEPIGRVP 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              + L      +      DP +L     T+  +       N        G         
Sbjct: 176 GVGELLYFGERRLAFRLWLDPDKLAAFGLTSNDVVAALSSQNRLVPAGQVGGEPAPAGQQ 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + V+ +  +  +                 + I     G+        +         L
Sbjct: 236 FTFTVQLQGRLLSVEEFNN------------LIIRTTPEGSIVRLRDVGEASLGGENYAL 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               + +              +   T +    +     A             +      S
Sbjct: 284 QATDIRSVPSVGMAVYQLGGTNALETSKGIKAVLDDFEATMPVGLKMEKIYDSTDFINAS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 +      LV+++LF+ +   K  LV   +I + +I T AL++  G +L   ++ 
Sbjct: 344 IQGVVSSLRDAVMLVVLILFLFLQDWKATLVPGIAIPVALIGTFALVNAFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G++L  GL VD  I V E    +  + +S   +        +S +  ++I      + + 
Sbjct: 404 GLILATGLVVDDAITVIEDTSTKKAEGRSAVEAAKGTMDELFSAVIATSIVLFAVFLPVL 463

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF    G   + FA T+  S+ IS F A++    +   +
Sbjct: 464 FFPGATGSIYQQFAATIIFSVAISTFNALTFSPMLAALL 502



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +  T      FG   N   +  ++   G  V+D + V   +    
Sbjct: 368 DWKATLVPGIAIPVALIGTFALVNAFGFSLNQLTLFGLILATGLVVDDAITV---IEDTS 424

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S  +    +++E     + TS+  F   LP+  + G+       FA  + F +
Sbjct: 425 TKKAEGRSAVEAAKGTMDELFSAVIATSIVLFAVFLPVLFFPGATGSIYQQFAATIIFSV 484

Query: 806 VVAASSSIFIAAPILLFI 823
            ++  +++  +  +   +
Sbjct: 485 AISTFNALTFSPMLAALL 502



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 77/230 (33%), Gaps = 9/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +    +  L        S          L R     G + A     + +          S
Sbjct: 885  NADGEQIPLSEFFTVRASEGPSVVPHFNLYRSIKVDGQAAAGKSSGQAINTMRDIFKVQS 944

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                          E+    +  VI +   +++Y+ +      +   L  + T+   +  
Sbjct: 945  IPGLGFDWTGISREEVKAGSLAVVIFALGILVVYLVLAAQYESYADPLIILMTVPTAMLG 1004

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L F A+ G   N+ A   ++ LIG +  + +++ D   + M     +I       +S  
Sbjct: 1005 ALAFLAIRGEVLNIYAQVGLVMLIGLAAKNGILIVDLANQRMAAGARAIEAAREAARS-- 1062

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
              L   + T++++    LP+ +  G+      S    +  G+++A   S+
Sbjct: 1063 -RLRPIIMTAISSLFGFLPLVLASGAGARSQASLGTVVFGGLLIATVLSL 1111


>gi|206896100|ref|YP_002247228.1| protein-export membrane protein SecF [Coprothermobacter
           proteolyticus DSM 5265]
 gi|206738717|gb|ACI17795.1| protein-export membrane protein SecF [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 295

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 127/278 (45%), Gaps = 12/278 (4%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
             V +     +      +   LN G+DF GG+   V      D S +        I D  
Sbjct: 30  IVVILVGFLFMGINYARYHEPLNLGVDFSGGVVFTVTLPENKDASELTRIALEAGIHDPI 89

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +                   +        +      +   +++ +   VGP ++  LI+
Sbjct: 90  VRKSGAN-----------EYELRAKIDEAALPTVRESLQASASVTDENFVGPSVASSLIK 138

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             ++ + ++ +A+L+YI +RF++ + L A+  L+ D+  T+  FA+F I  N   VA +L
Sbjct: 139 NAVLSLTVALLALLVYISVRFRFKYGLAAVLALLHDVLVTISIFAIFFIPINSPFVAVLL 198

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            L+GYS+ D +VV DR+R+N +   +  S  ++++ +I+    RS+ TS+   I+ L + 
Sbjct: 199 ILVGYSLQDSIVVLDRVREN-RKLNSKASTAEVVESAIHSVFRRSLNTSITTLIAALCLM 257

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++    +  F   +  G++    SSIFIAA +L+   +
Sbjct: 258 IFAYRFLPDFTTGLTVGLITGTYSSIFIAASLLVDWGE 295


>gi|56417203|ref|YP_154277.1| preprotein translocase subunit SecF [Anaplasma marginale str. St.
           Maries]
 gi|56388435|gb|AAV87022.1| protein export membrane protein [Anaplasma marginale str. St.
           Maries]
          Length = 311

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 4/281 (1%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRSN 597
              F++ R   + IS++  + S  L+   G+  G DF GG+      +     +  VR+ 
Sbjct: 13  NFNFIKHRKLALLISLVLLLGSALLIALKGVTLGADFTGGMVANFSLDDGHSTVEQVRAA 72

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L    +  +S Q F       + +            +  +        +   T +  + V
Sbjct: 73  LSDAGLSGLSVQGFGDSGQEFMVVFRGTAGPGGSDELQRIKDAI--NGIGAITYKRLDYV 130

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G ++    + +G++ V+ S + M +Y+  RFK  FA+G +  L+ D+  T+G  +  GIE
Sbjct: 131 GAQVGVAQVTRGVIAVLCSLVGMFLYLCCRFKLQFAVGGVLALVHDVAITMGMVSATGIE 190

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTS 776
           F L A A VL +IGYSVND VV+YDR+R+  +  +        +I+  IN TL R++ TS
Sbjct: 191 FGLPATAGVLMIIGYSVNDSVVIYDRIRELARGESVHGKDVGGIINAGINSTLSRTLLTS 250

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
               ++ +P+ +     +    + + FG++V   SSIFI+ 
Sbjct: 251 GTTLLAAVPLILLCEGAVHDLGVIVFFGVIVGTYSSIFIST 291


>gi|193211687|ref|YP_001997640.1| preprotein translocase subunit SecD [Chlorobaculum parvum NCIB
           8327]
 gi|193085164|gb|ACF10440.1| protein-export membrane protein SecD [Chlorobaculum parvum NCIB
           8327]
          Length = 599

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 123/461 (26%), Positives = 223/461 (48%), Gaps = 14/461 (3%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSK 125
              L    + +R+ + + G+    ++   ++ + +  +    +  +   +    +     
Sbjct: 152 QDALIRAKEIIRNRIDQYGVAEPVIQTQGSRRLIIELSGVTDEARVRRLLMGTAKLEFKL 211

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
           +    +   L+   E+  ++ L   +       A   +  ++ +++ ++       Q   
Sbjct: 212 V---KEPQQLLRAVERAGTVSLQAPSRPVQADSAQVSAGGVVAKKLSEVIGVMPNGQVFT 268

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
                           L         ++                     +     YLV+ 
Sbjct: 269 PAYAHD----------LVAAALKRDDVNALLPQDTQLLLSAKPEQTAKGEKYYLLYLVQK 318

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
             E++G  +  A A F  +  +P V +S ++ G  ++  +T  NIGK +A+VLDG V +A
Sbjct: 319 TPELTGGVITEAKATFSSQDSQPEVLMSMNDEGTSKWARITGANIGKQIAIVLDGSVYSA 378

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           PV+   IPSG + I+G  +++ A  L  +L+AGSLP  + I+EER VG  LGSD I  G 
Sbjct: 379 PVVQSRIPSGNSVINGIGSLDEAKDLEIILKAGSLPAPVRILEERTVGPSLGSDYIRDGL 438

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            ++  G   + LFMI  Y K G+ AD ++ LN+++ +++L+   A LTLP IAGIVL +G
Sbjct: 439 LSVTWGFTAVALFMIFYYHKAGIAADLALVLNILIVISVLAGFSAALTLPGIAGIVLTMG 498

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +AVD+N+L+ ERIREE    +S+  ++D G+++A+S+I DS++T L A  +L+ +G G V
Sbjct: 499 MAVDANVLIYERIREELADGKSLRMAIDTGYNKAFSSILDSHVTTLAAAFLLYVYGVGPV 558

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +GFA+T+ +    S+FTAI + + +       K M      
Sbjct: 559 QGFAVTLMIGTAASLFTAIVVTKVLFDLFFESKLMNEKSFG 599



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/175 (18%), Positives = 77/175 (44%), Gaps = 4/175 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR G++ V     A+ +++   +     + A   L+L+I   +   A F   
Sbjct: 426 GPSLGSDYIRDGLLSVTWGFTAVALFMIFYYH-KAGIAADLALVLNILIVISVLAGFSAA 484

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++Y+R+R+ +       S R  ID   N+     + + +
Sbjct: 485 LTLPGIAGIVLTMGMAVDANVLIYERIREELAD---GKSLRMAIDTGYNKAFSSILDSHV 541

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               +   + V+G   +  FA+ +  G   +  ++I +   +    ++ +  N +
Sbjct: 542 TTLAAAFLLYVYGVGPVQGFAVTLMIGTAASLFTAIVVTKVLFDLFFESKLMNEK 596



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 109/310 (35%), Gaps = 43/310 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMP-------------------K 41
           M+NN + +IL +++  + +    P +   ++  +  S                       
Sbjct: 1   MKNNTFKLILIAVVALVSVWSIWPTYRDYALTKKLNSFDSRADSLKFALDHRQEIEQAHD 60

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             + LGLDL+GG HLV+EVD  D +        D+    +                I   
Sbjct: 61  KSLKLGLDLKGGMHLVMEVDILDLIEQKAWNKDDKFNRIMDNVRRQAGESNDNVVNIL-- 118

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                     A+     ++      ++      +++    E                A+ 
Sbjct: 119 ---------AAEFRKENIKLSRYFYDLRDSDQEVISKLNAEA-------------QDALI 156

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
           ++ EIIR RIDQ G++E  IQ  GS R++I+L G  D +R+R+LL  TAK+ F  V    
Sbjct: 157 RAKEIIRNRIDQYGVAEPVIQTQGSRRLIIELSGVTDEARVRRLLMGTAKLEFKLVKEPQ 216

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281
                +     +     ++ +  D  ++S   +     +            +        
Sbjct: 217 QLLRAVERAGTVSLQAPSRPVQADSAQVSAGGVVAKKLSEVIGVMPNGQVFTPAYAHDLV 276

Query: 282 FFEVTRDNIG 291
              + RD++ 
Sbjct: 277 AAALKRDDVN 286


>gi|255008626|ref|ZP_05280752.1| AcrB/AcrD/AcrF family multidrug resistance protein [Bacteroides
           fragilis 3_1_12]
          Length = 1037

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 95/694 (13%), Positives = 219/694 (31%), Gaps = 48/694 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G++      +    ++++P   P   I+                 
Sbjct: 9   RPVFSGVISVVIVLMGVIA-----MQALPVEQYPDIAPPT-IN--------VWATYPGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   + +  +E  + ++       +        I + F      +  A  V   + G
Sbjct: 55  AETVQKAMIVPLEEAINGVEDMTYMTSTASNAGDASINIYFKQGANADMAAVNVQNRVNG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  +  K  + T  ++   ++                +  +      ++       
Sbjct: 115 VLSQLPAEATKTGVTTEKQQNAELLTFALYSPDNRFDQTFLNNYVKINVEPRLKRIGGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P ++ Q       +S      N       FG         N+Y
Sbjct: 175 KAQLFGS-NYSMRLWLRPDKMAQYGLIPDDISSVLAKQNIEAATGSFGANHPT---ANEY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +S                +    +     G          ++           
Sbjct: 231 TMKYRGRLS-------------TAEEFGELVIKSLPGGDVLRLKDVADVELGDEYYNYST 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            ++       + + KA  + + TI     +   +          +V          S + 
Sbjct: 278 EVSGHPAAIMLINQKAGSNASSTINEIHEVLDEIERDLPEGAEFVVLTDTNKFLYASINS 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   K  L+   SIF+++I T A++SL+G ++ L ++  +V
Sbjct: 338 VIRTLIEAILLVIVVVYVFLQDIKSTLIPTVSIFVSIIGTFAVMSLIGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++ +  +   S   + D       S I  S I  +   + +   
Sbjct: 398 LAIGTVVDDAIVVVEAVQAKFDEGYRSPVLAADDAMKGVSSAILTSTIIFMAVFIPVAMM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
           GG +      F ITM +++ IS   A ++  A+                 +        F
Sbjct: 458 GGTSGAFYAQFGITMAVAVGISAINAFTLSPALCALFLKPYIDEHGNTKNNFAARFRKAF 517

Query: 532 FLIPDCIAIQFMR------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
            ++ + ++ +++R       R W +  +I  S   + LL        I  +    + V  
Sbjct: 518 NVVFERLSRRYVRGVLYIIHRRWLLWGTIAASFGLLVLLVNITKTGLIPQEDTGTVMVSM 577

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           N     S+ ++N    +I +      + E +  V      G   +Q      +K      
Sbjct: 578 NTKPGSSMAQTNKVMARINNRLDSIPEIEYSGAVGGFSFSGSGPSQAMYFMTLKDWDQRK 637

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
               ++ +        + ++    +  +    IA
Sbjct: 638 GEGQSVDDVIGKIYAATADVPDATVFAMSPPMIA 671



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ + I  T    +L G   NL  + A++  IG  V+D +VV + ++   
Sbjct: 359 DIKSTLIPTVSIFVSIIGTFAVMSLIGFSINLLTLFALVLAIGTVVDDAIVVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S     D ++       + +++      +P+A+ GG+       F I MA  +
Sbjct: 419 DEGYR--SPVLAADDAMKGVSSAILTSTIIFMAVFIPVAMMGGTSGAFYAQFGITMAVAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A ++  ++  +      
Sbjct: 477 GISAINAFTLSPALCALFLK 496



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 62/167 (37%), Gaps = 9/167 (5%)

Query: 672  GVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             +I     +LIY+    +    +     + ++   +  +  F  L G+E N+     ++ 
Sbjct: 873  ALIFVFCMVLIYLILCALYESVFIPFAVLLSVPCGLMGSFLFAWLLGLENNIYMQTGLIM 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +IG      +++ +      K  +  ++       +    L   + T ++    ++P+ +
Sbjct: 933  IIGLLAKTAILLTE---YAGKRRSEGMTLAQAAYSAAKVRLRPILMTVLSMVFGLIPLIM 989

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G +   S A  +  G+ V   + +F+   + +     + +  R
Sbjct: 990  AHGVGANGSRSLATGVIGGMTVGTLALLFLVPSLFIAFQFIQERVKR 1036


>gi|322433029|ref|YP_004210278.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
 gi|321165256|gb|ADW70960.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
          Length = 1171

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/560 (11%), Positives = 152/560 (27%), Gaps = 42/560 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                 +L   I   G +        Q  +   P                   ++     
Sbjct: 10  RPVATALLMVAIFLAGAVS-----YFQLPVSALPEVDYPT-----------IQVLTFYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D V   +    +     +        +     + I + F  S   +    +V   + 
Sbjct: 54  ASPDVVASGVTAPLERQFGEVAGLSQMTSTSAGGVSVIVMQFQLSLDIDVAEQEVQAAIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S L  +     + + +    + VL+   +        +       +   +I      
Sbjct: 114 AAQSYLPANLPTPPIYSKSNPADAPVLT-LALTSNEMPLSQVEDLADTRLAPKISQISGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  + +P+ L         +       + +     F       +    
Sbjct: 173 GLVSISGGQKPAVRIQANPTALAAYGVNLEDLRNSLTGNSLNSAKGNFDGPTQDYTINAN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    +                       +                 +   +      
Sbjct: 233 DQLLSSGD--------------------YKSVVVAYRNGAPVMLGEVAKVVDGVENSTLA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +   +    +++   L   L           +      A   S  
Sbjct: 273 AWMNQTPAVILNIQRQPGANTIQVVDSITKLLPQLETTLPKAVHVQIVTDRTTAIRASVK 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +  GLV++V+F+ +      ++   ++ +++I TL ++ L G +L   ++  +
Sbjct: 333 DVEFELMLTIGLVVMVIFLFLRNVAATIIPSVAVPISLIGTLGVMYLAGYSLNNLTMMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I++ E I     + +    +   G  +   TI    I+ +   + L F 
Sbjct: 393 TISTGFVVDDAIVMIENISRYIEEGEEPMAAALKGAEQIGFTILSLTISLIAVLIPLLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FA+T+ ++I+IS F ++++   M   +++Y   +           +    
Sbjct: 453 GDIAGRLFRQFAVTLAVTIVISAFVSLTLTPMMSARLLKYTPPEEQGWFYDKSEEVFESI 512

Query: 538 IAIQFMRARFWGVGISILFS 557
           I       RF     +I   
Sbjct: 513 IRFYGRTLRFVLRFQTITLL 532



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 96/274 (35%), Gaps = 12/274 (4%)

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            S   +       +T   N  +   G  +  V+A R     ++    + +   + S    
Sbjct: 214 NSAKGNFDGPTQDYTINANDQLLSSGDYKSVVVAYRNGAPVMLGEVAKVVDGVENSTLAA 273

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI- 670
              +   V L  Q        +V++ + K + ++           +    +  +      
Sbjct: 274 WMNQTPAVILNIQRQPGANTIQVVDSITKLLPQLETTLPKAVHVQIVTDRTTAIRASVKD 333

Query: 671 ----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               + + I  + M+I++++R      +     + + +  TLG   L G   N   + A+
Sbjct: 334 VEFELMLTIGLVVMVIFLFLR-NVAATIIPSVAVPISLIGTLGVMYLAGYSLNNLTMMAL 392

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G+ V+D +V+ + +    +             K   +     +  +++    ++P+
Sbjct: 393 TISTGFVVDDAIVMIENI---SRYIEEGEEPMAAALKGAEQIGFTILSLTISLIAVLIPL 449

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G   G +   FA+ +A  IV++A  S+ +  
Sbjct: 450 LFMGDIAGRLFRQFAVTLAVTIVISAFVSLTLTP 483



 Score = 45.8 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 85/204 (41%), Gaps = 6/204 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
            + L+ + K I E    +++              +    + ++ + + + I + + ++ + 
Sbjct: 949  QALDAINKTIKEANLPASVVKDYQGTASAFEGSLSNEGLLILAALVTVYIVLGVLYESFV 1008

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L     F ++ ++ A+  ++ LIG    + +++ D   +  +  
Sbjct: 1009 HPITILSTLPSAGVGALLALRFFHLDLDIVAIIGIILLIGIVKKNGIMMVDFALEAERNE 1068

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
              + +  + I ++        + T+MAA +S LP+A     G  +     + M  G++ +
Sbjct: 1069 GKNAT--EAIYQASLLRFRPIMMTTMAALLSGLPLAFGSGIGSELRKPLGVAMVGGLLFS 1126

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               +++    I +F  +  A+ ++
Sbjct: 1127 QVLTLYTTPVIYIFFDNLGARFSK 1150


>gi|325473531|gb|EGC76724.1| protein-export membrane protein SecF [Treponema denticola F0402]
          Length = 413

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 124/244 (50%), Gaps = 3/244 (1%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +P++   VR  L S+    +       ++ F +RL        A   +  ++   +    
Sbjct: 151 KPINTDEVRHALSSIPSVSVQQLGTPEDRYFQIRLADDGKYEDANKELRSIINTALNAAY 210

Query: 647 --PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                 + +T+ VG + S  L ++ I+ V  + + + IY   RF+W F+L AI  L+ D 
Sbjct: 211 GIENIAVISTDFVGSRFSSSLAQQAILLVGGALVLIFIYAMFRFQWNFSLAAIIALLHDT 270

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              + F +   +EFN T +AA+LT+IGYS+ND +V++DR+R+ + L    +   +++DK+
Sbjct: 271 LIMIMFISWTQMEFNSTTIAAILTIIGYSINDTIVIFDRIREKIHLEPK-LECNEILDKA 329

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + E   R++ T++   ++V+ + ++    +  FA+ +  G++    SSI++A+  +    
Sbjct: 330 LTEVFTRTIITTLTTMVAVVALYLFTTDSMKDFALALIVGLISGTYSSIYVASYFIALTS 389

Query: 825 DWRA 828
             + 
Sbjct: 390 KGKK 393


>gi|90423409|ref|YP_531779.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
 gi|90105423|gb|ABD87460.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
          Length = 1066

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/548 (10%), Positives = 152/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+  L        +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLIFLAGLISLL-----SMPISEYPDVVPPSVV---------VRATYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVATPIEEQINGVEGMLYMASQATTDGAMTLTVTFRLGTDPDKAQQLVQNRVAQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  ++T        ++                   +    D++   +   
Sbjct: 116 AEPRLPAVVRQLGIITKKSSPDLTMVVHLLSPNNRYDMTYLRNYAVLNVKDRLARLDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +  +   T + +       N      + G          Q 
Sbjct: 176 DVQLYGAGDYSMRIWVDPQKAAEHALTASDIVKAIQAQNVEAAAGVVGASPSVKGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +S                +    +                 I    +      
Sbjct: 236 SVNAEGRLSTEE-------------QFRDIVVKSGAHGEVTRLRDVARIELGASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     ++     A ++          +          S   
Sbjct: 283 LLDNKQAVAIPIFQAPGSNALQISDSVRATMAEIQKTMPEGVAYKIVYDPTQFVRFSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T A++ + G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIVGTFAVMHMFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +       +S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGRSPRDATYQAMKEVSGPIIAIALVLIAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++        +  +    L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAINSLTLSPALAALLLKGHNDPKDRLTRILDRALGWFFR 522

Query: 539 AIQFMRAR 546
                 AR
Sbjct: 523 GFNRAFAR 530



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLSIIMIVPMGLLAAMFGVWLSKGDNNVFTQIGLIVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TSMA  + VLP+ +    G  +  +  + +  G+
Sbjct: 960  -LEFAGRTPIKAAIEASRLRLRPILMTSMAFIMGVLPLVLSTGAGAEMRRAMGVAVFSGM 1018

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      +F+     + + 
Sbjct: 1019 IGVTLFGLFLTPVFYVLLR 1037



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 55/127 (43%), Gaps = 8/127 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSIVGTFAVMHMFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
                 S RD   +++ E  G  +       I+V     +     G     FA+ +A   
Sbjct: 425 A---GRSPRDATYQAMKEVSGPII-AIALVLIAVFVPLAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSS 812
           V++A +S
Sbjct: 481 VISAINS 487


>gi|315180868|gb|ADT87782.1| multidrug resistance protein, hypothetical [Vibrio furnissii NCTC
           11218]
          Length = 1037

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 62/653 (9%), Positives = 176/653 (26%), Gaps = 44/653 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +     V+L  ++C  G +        +  +   P                   +    +
Sbjct: 9   KRPVAAVVLSLLLCVFGFVS-----FSKLSVREMPDIESPV-----------VSVTTRYD 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 +   +    ++  + +          R   ++IT++F            V   +
Sbjct: 53  GASATIIENQITSVLEDQLAGISGIDEITSVTRNGSSRITITFELGYDLNTGVSDVRDAV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L        +        + V    +    +    + +  I R   D+  +   
Sbjct: 113 ARAQRNLPDAADDPQVFKNNGSGEASVYINLSSS--VMDRTQLTDYIERVLSDRFSLISG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                 S  +   +     P  +     TT+ +S      N    G              
Sbjct: 171 VSSVDISGGLYKVMYVRLKPELMAGRGVTTSDISDALRRENIESPG-------------- 216

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 +V      ++  TA            +          +     ++         
Sbjct: 217 -----GEVRNDSTVMSVRTARTYRTPEDFQYLVVKHASDRTPIYLKDVADVFIGAENENS 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                  V        ++  +     +        ++          ++  +      S 
Sbjct: 272 TFKSDGVVNVGMGIVPQSDANPLDVAKRVHQEVDQIQKFLPEGTRLAIDYDSTVFIERSI 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T  I  GLV++VL++ +   +  ++   ++ +++I +      LG ++ L ++  
Sbjct: 332 KEVYSTLFITGGLVILVLYIFIGQARATIIPAITVPVSLISSFIAAYYLGFSINLITLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           ++L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F
Sbjct: 392 LILSIGLVVDDAIVVMENIYHHIEQGEKPLMAAYKGAREVGFAVIATTLVLVMVFLPISF 451

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G        F++ + ++++ S   A+++   +   I++     +   N +   F   +
Sbjct: 452 MDGMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLSSKILKAHVKPNRFNNAVDFLFGKLE 511

Query: 537 CIAIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 ++    +      ++ +           +   +       +     R  D +  
Sbjct: 512 SGYRAALKKALHWKWAAPVVILACIGGSYGLNQSVPAQLTPSEDRGVIFAFVRGADATSY 571

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                ++ + +       G+          P    +       V   + +   
Sbjct: 572 NRMSANMDLVEERLMPLLGQGFLKSFSIQSPAFGGSAGDQTGFVIMILDDWND 624



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 89/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARTYRTPEDFQYLVVKHASDRTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V + V +++ +I           +    +  + R        +
Sbjct: 279 VNVGMGIVPQSDANPLDVAKRVHQEVDQIQKFLPEGTRLAIDYDSTVFIERSIKEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    +    T+ + +  +       G   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATIIPAITVPVSLISSFIAAYYLGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVMENI---YHHIEQGEKPLMAAYKGAREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMAVIFSSLIALTLTPVLSSKILKAHVKPNR 498



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 49/140 (35%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        L G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFIGLYLMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    ++F   I  +    L   +  +       +P+ +    G     S    + FG+
Sbjct: 931  QLRDRGLAFETAIVDASARRLRPILMMAFTTLAGSVPLILSTGAGYESRVSVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYD 825
              +   ++F+   +   I  
Sbjct: 991  GFSTLVTLFVIPAMYQLISR 1010


>gi|260767242|ref|ZP_05876183.1| RND multidrug efflux transporter [Vibrio furnissii CIP 102972]
 gi|260617750|gb|EEX42928.1| RND multidrug efflux transporter [Vibrio furnissii CIP 102972]
          Length = 1037

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/653 (9%), Positives = 176/653 (26%), Gaps = 44/653 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +     V+L  ++C  G +        +  +   P                   +    +
Sbjct: 9   KRPVAAVVLSLLLCVFGFVS-----FSKLSVREMPDIESPV-----------VSVTTRYD 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 +   +    ++  + +          R   ++IT++F            V   +
Sbjct: 53  GASATIIENQITSVLEDQLAGISGIDEITSVTRNGSSRITITFELGYDLNTGVSDVRDAV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L        +        + V    +    +    + +  I R   D+  +   
Sbjct: 113 ARAQRNLPDAADDPQVFKNNGSGEASVYINLSSS--VMDRTQLTDYIERVLSDRFSLISG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                 S  +   +     P  +     TT+ +S      N    G              
Sbjct: 171 VSSVDISGGLYKVMYVRLKPELMAGRGVTTSDISDALRRENIESPG-------------- 216

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 +V      ++  TA            +          +     ++         
Sbjct: 217 -----GEVRNDSTVMSVRTARTYRTPEDFQYLVVKHASDRTPIYLKDVADVFIGAENENS 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                  V        ++  +     +        ++          ++  +      S 
Sbjct: 272 TFKSDGVVNVSMGIVPQSDANPLDVAKRVHQEVDQIQKFLPEGTRLAIDYDSTVFIERSI 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T  I  GLV++VL++ +   +  ++   ++ +++I +      LG ++ L ++  
Sbjct: 332 KEVYSTLFITGGLVILVLYIFIGQARATIIPAITVPVSLISSFIAAYYLGFSINLITLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           ++L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F
Sbjct: 392 LILSIGLVVDDAIVVMENIYHHIEQGEKPLMAAYKGAREVGFAVIATTLVLVMVFLPISF 451

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G        F++ + ++++ S   A+++   +   I++     +   N +   F   +
Sbjct: 452 MDGMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLSSKILKAHVKPNRFNNAVDFLFGKLE 511

Query: 537 CIAIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 ++    +      ++ S           +   +       +     R  D +  
Sbjct: 512 SGYRAALKKALHWKWAAPVVILSCIGGSYGLNQSVPAQLTPSEDRGVIFAFVRGADATSY 571

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                ++ + +       G+          P    +       V   + +   
Sbjct: 572 NRMSANMDLVEERLMPLLGQGFLKSFSIQSPAFGGSAGDQTGFVIMILDDWND 624



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 89/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARTYRTPEDFQYLVVKHASDRTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V + V +++ +I           +    +  + R        +
Sbjct: 279 VNVSMGIVPQSDANPLDVAKRVHQEVDQIQKFLPEGTRLAIDYDSTVFIERSIKEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    +    T+ + +  +       G   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATIIPAITVPVSLISSFIAAYYLGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVMENI---YHHIEQGEKPLMAAYKGAREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMAVIFSSLIALTLTPVLSSKILKAHVKPNR 498



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        L G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFIGLYLMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    ++F   I  +    L   + T+       +P+ +    G     S    + FG+
Sbjct: 931  QLRDRGLAFETAIVDASARRLRPILMTAFTTLAGSVPLILSTGAGYESRVSVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYD 825
              +   ++F+   +   I  
Sbjct: 991  GFSTLVTLFVIPAMYQLISR 1010


>gi|78486339|ref|YP_392264.1| acriflavin resistance protein [Thiomicrospira crunogena XCL-2]
 gi|78364625|gb|ABB42590.1| Resistance-Nodulation-Cell Division (RND) superfamily cation efflux
           transporter [Thiomicrospira crunogena XCL-2]
          Length = 1028

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/636 (11%), Positives = 180/636 (28%), Gaps = 39/636 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   ++   GL+        +  L  +P+  P                     
Sbjct: 9   KRPVLATVASLLLVAFGLMA-----FDRMSLREYPNVDPPVI---------SIETTYLGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +             ++ IT+ F+ +R  +  A+ +   +  
Sbjct: 55  SAEVVESRITKQIEDRIAGVSGIEYISSQSTDGRSNITVEFSINRDIDAAANDIRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L V     ++      +  I+      D       E +    R  +D+  + +   
Sbjct: 115 IANNLPVAADAPVIEKADGDDSPIIWFNLASD--RMTIPELTDFAERYIVDRFSVLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    +P +L     +  ++       N                     
Sbjct: 173 RVRVGGGQSFALRVWLNPQKLALYGLSPTQIENQIRASNIELPVGSLQG----------- 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                     + L                 +   +    +        +           
Sbjct: 222 --------DDVMLTLQAEKPLQSVDDFKQLVIKQDKQIGQITLGDVAQVQMGAIERRRFF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       ++  +     + A     ++                      + + 
Sbjct: 274 KGNGMPMVGIGIIKQSNANTLTVADLANQRKDLINQTLPDNLNLEDSYDASVFVHQAVNE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++V+ + +   +  LV   ++ +++I T  +L +LG ++ L ++  +V
Sbjct: 334 VFKTLFIALGLVVLVMLVFLKNVRAALVPAVTLPVSLIATFWVLWMLGFSVNLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E  +           +  +G  +    +  + +  +   + + F  
Sbjct: 394 LAIGLVVDDAIVVLENTQRHLDMGNKPIAAAYLGTRQVGFAVIATTVVLVAVFLPIGFLE 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FAIT+ +++L S + A+++  A+   I+   K                  +
Sbjct: 454 GSVGRLFSEFAITLAVAVLFSSWVALTLSPALASNILSASKTTPASRPRKHHPTHRFKKL 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLSVVRSN 597
            ++ +R   W V I +      +         Y      G   + V          ++S 
Sbjct: 514 LVKNLRHPIWVVLIFLGVVASMVFFSQKVPQEYVPKEDRGVFFVMVKGPEGATFDYMQSY 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +  ++   +        K  +VR     G       
Sbjct: 574 MNEIESRLMPLVEKGEVKRLIVRAPRSFGSGEVFNS 609



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 57/158 (36%), Gaps = 11/158 (6%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF--GIEFNLTA 722
                    +   + + + +  +F+ +      +  L + +    G FAL   G+  N+ +
Sbjct: 849  TSSLYWVFLFGGLVVFLVLAAQFESFIQPF--VIMLTVPLAFAGGIFALLFYGLSLNIYS 906

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
              A++ L+G +  + +++ +      +L    +     +  + +  L   V T+      
Sbjct: 907  QIALIMLLGLATKNGILIVEF---TNQLRDKGLPVYHALVSATHLRLRPIVMTAFTTCAG 963

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             +P+      G          + +G+  +   S+F+  
Sbjct: 964  TIPLIFSEGAGAETRQILGYVLLWGVAFSTLLSLFVVP 1001



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
              AL    TL + +  T     + G   NL  + A++  IG  V+D +VV     +N +
Sbjct: 356 VRAALVPAVTLPVSLIATFWVLWMLGFSVNLLTLLALVLAIGLVVDDAIVVL----ENTQ 411

Query: 750 LY-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
            +                +     + T++      LP+    GSV      FAI +A  +
Sbjct: 412 RHLDMGNKPIAAAYLGTRQVGFAVIATTVVLVAVFLPIGFLEGSVGRLFSEFAITLAVAV 471

Query: 806 VVAASSSIFIAAPI 819
           + ++  ++ ++  +
Sbjct: 472 LFSSWVALTLSPAL 485



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 70/528 (13%), Positives = 160/528 (30%), Gaps = 54/528 (10%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R+  W+V+++     +G++ ++  F  +   +  P                G   V+  
Sbjct: 518  LRHPIWVVLIF-----LGVVASMVFFSQKVPQEYVPKEDR------------GVFFVMVK 560

Query: 61   DEDDFVNGFLQMYSDELRSF---------LKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
              +     ++Q Y +E+ S          +K+  +               F      +  
Sbjct: 561  GPEGATFDYMQSYMNEIESRLMPLVEKGEVKRLIVRAPRSFGSGEVFNSGFVIVVLDDWA 620

Query: 112  ADKVT-LFLQGVNSKLNV--DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168
              +     ++ V   L      K   ++ ++         Q  I     +A+EQ  E++ 
Sbjct: 621  QRRSGFDIMRSVRKDLADLSGVKAFPVMRSSIGGRIQKPVQFVIGGPSYNALEQWKELMD 680

Query: 169  QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
            Q I++     +++          QL  + D +R R L  +   ++    +          
Sbjct: 681  QAIEKTNPGLNSLDWDYEPS-KPQLRLKVDYARARALGISHQDITETLQI---------- 729

Query: 229  GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                     G++ +   + +     +         KT   +  I  +  G  +   ++  
Sbjct: 730  -------LLGSKKVTTFQYDGEEYDILLKADPKWFKTPDDLNQIYLNADGTEQMIPLSSL 782

Query: 289  NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                  A                  +  A++  + ++  A      L   +LP +  I  
Sbjct: 783  VSMSEDATASSLNRYNRVRA----ITLSAKLEDHLSLGQALSYLNDLTRKTLPEEATIDY 838

Query: 349  ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
            +        + S           +V +VL           V   ++ L     +  L   
Sbjct: 839  KGQSKEFQTATSSLYWVFLFGGLVVFLVLAAQFESFIQPFVIMLTVPLAFAGGIFALLFY 898

Query: 409  GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            G +L + S   +++ +GLA  + IL+ E   +   K   V+ +L          I  +  
Sbjct: 899  GLSLNIYSQIALIMLLGLATKNGILIVEFTNQLRDKGLPVYHALVSATHLRLRPIVMTAF 958

Query: 469  TALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            T    T+ L F    G    +     +   +  S   ++ +V      
Sbjct: 959  TTCAGTIPLIFSEGAGAETRQILGYVLLWGVAFSTLLSLFVVPVAYAL 1006


>gi|269925200|ref|YP_003321823.1| protein-export membrane protein SecD [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269788860|gb|ACZ41001.1| protein-export membrane protein SecD [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 515

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 125/542 (23%), Positives = 230/542 (42%), Gaps = 55/542 (10%)

Query: 1   MRNNPW-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           MR +    +I   ++    + + LP                +  +  GLDL+GG  ++L+
Sbjct: 1   MRRSTLYSLIFIIILTAFAVWVDLPGSRNV--------FGRQAEVVEGLDLQGGLQVLLQ 52

Query: 60  ---VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
              V         ++     +   +   G+    ++ Q  ++I +     +  E      
Sbjct: 53  ARHVGGKAPTREQMEEVRQVVEQRVNSLGLTEPVVQLQGSDRIVVELPGVKDPEQAIRTF 112

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                         P +   +  T    +I     N +   +           +   Q  
Sbjct: 113 QGTGLLEFIDAGDTPLQVGTLVNTTLGPAITNGNQNQNSTKNGTPTPGTTPTPESTPQAN 172

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            +                                                     + L+ 
Sbjct: 173 QTP-------------------------------------VAANVTPTPEDPQFQQALQA 195

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +   Q        I+G  +  A  +FDP T +PVV        A++F + T  N+GK LA
Sbjct: 196 TPPEQLQRTYTTVITGNDIANARPDFDPTTGEPVVSFELKPEAAKKFADFTTQNVGKYLA 255

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           + LD +++++P I   I +G+  I+G  T E A  LA  +R+GSL + L+I+    VGA 
Sbjct: 256 IALDKKIISSPQIRDPITNGRGVITGV-TREEARTLAIQIRSGSLSVPLDIISSNTVGAT 314

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG+DS+ +   A + G+  + LFMI+ Y   G V+  ++ +   +  AL  L+  TLTL 
Sbjct: 315 LGNDSVQRSIRAGLIGIGAVALFMILYYRLPGFVSVVALAIYAAVVFALFKLIPVTLTLA 374

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAG +L +G+AVD+N+L+  R+++E R+ + +  ++D+GF  A+ +I DSNI+ LI   
Sbjct: 375 GIAGFILSVGMAVDANVLIFARLKDELRRGRGLIQAIDVGFKNAWPSIRDSNISTLITCA 434

Query: 476 VLFFFGGGA----VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           +L +FG       ++GFAIT+ + +++SMFTAI + R ++  ++     +++ I  + + 
Sbjct: 435 ILIWFGSRFGASVIKGFAITLAIGVIVSMFTAIFVTRTLLQVVLSMVHTRNLWIWGIGKN 494

Query: 532 FL 533
            L
Sbjct: 495 QL 496



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 76/172 (44%), Gaps = 8/172 (4%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           ++  VG  +  + +++ I   +I   A+ +++ + ++      ++  L +        F 
Sbjct: 307 SSNTVGATLGNDSVQRSIRAGLIGIGAVALFMILYYRLP-GFVSVVALAIYAAVVFALFK 365

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L  +   L  +A  +  +G +V+  V+++ R++  ++           ID          
Sbjct: 366 LIPVTLTLAGIAGFILSVGMAVDANVLIFARLKDELR---RGRGLIQAIDVGFKNAWPSI 422

Query: 773 VYTSMAAFISVLPMAV----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             ++++  I+   +      +G SVI  FAI +A G++V+  ++IF+   +L
Sbjct: 423 RDSNISTLITCAILIWFGSRFGASVIKGFAITLAIGVIVSMFTAIFVTRTLL 474


>gi|281357120|ref|ZP_06243610.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Victivallis vadensis ATCC BAA-548]
 gi|281316678|gb|EFB00702.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Victivallis vadensis ATCC BAA-548]
          Length = 1032

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/628 (11%), Positives = 175/628 (27%), Gaps = 44/628 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               V++  +I  +G L           + ++P+  P               + +     
Sbjct: 10  PYLAVVIAIVISLVGALAIF-----ALPVAQYPNVTPP-------------QVSITTTYP 51

Query: 64  DFVN-GFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  L    + + + +        +           IT +F                
Sbjct: 52  GASAQELLDSVIEPIETQVNGVRDLIYLSSTGSNSGSVSITATFRIGSDGRANTQDTQDR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L    ++  ++   +    ++             +  S     Q   ++    
Sbjct: 112 VNWALPQLPETVQREGVIVQEQSGNILMAMTLYSPNRSYDTLFLSNYATIQLKKRLSRIP 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +    D  +L  +    +++       N        G       + 
Sbjct: 172 GVANIQIFGGSDYAMRFWLDTDKLAAMNLPVSEVVRAVQNQNLLVSSGAVGAAPNLPGEP 231

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            +Y V  +  ++                +    +     G  +        I        
Sbjct: 232 LKYTVRTRGRLT-------------DPAQFRDIVVRSTPGGPQVRLGDVARIELGGESYS 278

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L        +   ++  +G    +      A L     P      +  +      S
Sbjct: 279 TAASLNNQPAVMLLVYQQSDANGIAISDACRAAIAELSQSFPPDLACGFQYDSTEFIRAS 338

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T A    LV +V  + +   +  LV   +I ++++ T A L LLG ++ + ++ 
Sbjct: 339 VRDVAVTLATAVVLVALVTLLFLQNWRMALVPTLAIPVSILGTFAGLRLLGYSINMVTLF 398

Query: 419 GIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           G+VL IG+ VD  I+V E +      +  +   +      +    I  + +  L   V +
Sbjct: 399 GLVLAIGIVVDDAIIVIENVHRLMVEEKLAPREAASRSMRQITGAIIATTLVLLAMFVPI 458

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   R F +T+  ++L+S   A+++  A+   +++   ++S            
Sbjct: 459 CFLSGITGELYRQFGVTISTAVLLSAVNALTLSPALAALLLKPDMVESRFFLFRWFNAGF 518

Query: 535 PDCIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                          R +   +++   +    +   H +  G   +    +     R   
Sbjct: 519 GAISKRYGGGVAAAVRRFLPVLAVYLVLTGAAVWTFHRVPGGFIPEEDQGVFFAGIRLPP 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFL 618
            S +    E +      F+   G ++ L
Sbjct: 579 GSSLERTEEKVAELSAIFKKLPGVRDVL 606



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL     + + I  T     L G   N+  +  ++  IG  V+D ++V + +     
Sbjct: 364 WRMALVPTLAIPVSILGTFAGLRLLGYSINMVTLFGLVLAIGIVVDDAIIVIENVH--RL 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
           +    ++ R+   +S+ +  G  + T++      +P+       G +   F + ++  ++
Sbjct: 422 MVEEKLAPREAASRSMRQITGAIIATTLVLLAMFVPICFLSGITGELYRQFGVTISTAVL 481

Query: 807 VA 808
           ++
Sbjct: 482 LS 483



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 57/192 (29%), Gaps = 18/192 (9%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI---WIRFKWYF 692
                ++  I   +     +     +S +    G   + + +   + IY+    +   W  
Sbjct: 836  EAMSELEAIAARTLPPGIDHAWTDMSYQQKLAGNQALPVFALALLFIYLFLAALYESWVL 895

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNM 748
                I  +   +        L GI  N+     V+ L   S    +++ D    R R+  
Sbjct: 896  PFSVILAVFPSLLGAAALLMLTGIADNIYTQIGVVLLFAMSCKSSILIVDFALQRSREGA 955

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                 ++    L            V T  A  +  LP+      G +   S    +  G+
Sbjct: 956  DASAAAVEAAKL-------RFRAIVMTGAAFVLGTLPLLYASGPGAASQRSIGAAVVGGM 1008

Query: 806  VVAASSSIFIAA 817
              A    +F+  
Sbjct: 1009 TCAVLFGVFLVP 1020


>gi|109900423|ref|YP_663678.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Pseudoalteromonas atlantica T6c]
 gi|109702704|gb|ABG42624.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudoalteromonas atlantica T6c]
          Length = 1058

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/679 (11%), Positives = 190/679 (27%), Gaps = 33/679 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +   +G +        Q  +  +P  +P   +                 
Sbjct: 8   RRPIFAAVISLIFFIVGAISVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   ++
Sbjct: 54  NPKVIAETVASPLEQEINGVENMLYMSSQATSDGTMTLTITFAIGSDVDLAQTQVQSRVE 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S   +    D++      
Sbjct: 114 RAKPRLPEEVQRLGVVTEKSSPDLTMVVHLTSPDERYDMLYLSNYAVLNVKDELARINGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +    DP+++  L  + A +       N        G +   DSD  Q
Sbjct: 174 GQVRVFGAGDYSMRVWLDPNKVAALGLSPANIVAAIREQNQQAAAGSLGAQPSGDSD-FQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L+  K  ++ +              +    I       +         +    +     
Sbjct: 233 LLINVKGRLTDVE-------------EFEDIIVKVGEQGQISRLKDVARVELGASTYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L           +         GS  
Sbjct: 280 SMLDNKDAAAMPVFQASGSNAIQISDDVRSKMAELSKSFPEGLSYDIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S+ G+
Sbjct: 340 AVVKTLFEALLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIADGLSPIAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+T+ +S  IS   ++++  A+   +++    K   +       L    
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKSHDSKKDALTRGMDKLLGGWL 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                        G   +        +    +  G+    G+Q        V     +  
Sbjct: 520 FNPFNRLFTRLSDGYGWVVKKVLRFGVLVGVIYIGLVSLTGLQFATTPTGYVPGQDKQYL 579

Query: 598 LESLQIGDISFQNFDGE-KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +   Q+ D +  +   E    + R+  +            +     T       +     
Sbjct: 580 VAFAQLPDAASLDRTEEVIKEMSRIALEQPGVANSVAFPGLSINGFTNSTNSGIVFTPLD 639

Query: 657 VGPKISRELIRKGIVGVII 675
                +   +  G +   +
Sbjct: 640 DFADRTDPSLSAGAIAAAL 658



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/389 (8%), Positives = 104/389 (26%), Gaps = 19/389 (4%)

Query: 454  MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
                 AY  IF       + T+  F         +       + + +         +   
Sbjct: 663  AAIEDAYIAIFPPPPVQGLGTIGGFRLQIQDRANYGYDELYKVTMQVMQKAWATPELAGV 722

Query: 514  IIRYKKM-------KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
               Y+                     L      +Q      +    +       + +   
Sbjct: 723  FSSYQINVPQLDVDIDRTKAKQQSVSLDELFTTLQGYMGSVYANDFNQFGRTYQVNVQAD 782

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   +    +++       V +    +   +     +   N                
Sbjct: 783  EQFRQTPEQIAQLKVRNNKGDMVPIGSFINVNNTAGPDRVMHYNGFTTAEINGGAAPGFS 842

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               AQ  + +++ + +        +                 G+    +  + + + +  
Sbjct: 843  SGEAQAAIEKILAQTLPNG-----MTYEWTELTYQQILAGNAGMYIFPLIILLVFMVLAA 897

Query: 687  RFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +++     L  I  + + +   L    + G + N+      + L+G +  + +++ +  +
Sbjct: 898  QYESLSLPLAIILIIPMTLLSALSGVLIAGGDNNIFTQIGFIVLVGLATKNAILIVEFAK 957

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            +   L     +  + I +S    L   + TS+A  + V+PM      G  +  +  + + 
Sbjct: 958  E---LQDEGSTAYEAILESGRLRLRPILMTSIAFIMGVVPMVFSSGAGSEMRQAMGVAVF 1014

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G++      + +       +     + +
Sbjct: 1015 SGMIGVTVFGLLLTPLFYYVLARRGERQS 1043



 Score = 45.8 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L++     +      G     +    +   +       E +   I     +
Sbjct: 273 ASTYALRSMLDNKDAAAMPVFQASGSNAIQISDDVRSKMAELSKSFPEGLSYDIVYDPTV 332

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + E V   +   L+   +V V+               W  ++  +  + + +  T 
Sbjct: 333 FVRGSIEAVVKTLFEALLLVVLVVVL-----------FLQTWRASIIPLVAVPVSLVGTF 381

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K++ E 
Sbjct: 382 AFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAD---GLSPIAATQKAMKEV 438

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 439 TGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|124021879|ref|YP_001016186.1| RND family multidrug efflux transporter [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962165|gb|ABM76921.1| putative RND family multidrug efflux transporter [Prochlorococcus
           marinus str. MIT 9303]
          Length = 1086

 Score =  166 bits (419), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/531 (13%), Positives = 151/531 (28%), Gaps = 28/531 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G++       P   +   P+      I +  +  GG+ L     
Sbjct: 9   KRPVLTTVCSILIVLVGIIAI-----PSLPIANLPNIASP-LIQVTANYGGGNSL----- 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQ 120
                   +    ++  + +        +   + Q+ I + F +S         V   + 
Sbjct: 58  ---VTEQAVTNPLEQQINGVPGVNYISSTSDMEGQSTINVYFDESTDINIDQVNVQNRVS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L    +   +         ++  Q    Q    A   +  I  Q    +G     
Sbjct: 115 LAMPQLPEQVQATGVSVEQSNPSILLAYQVGSTQGQFDANYLNGLIYEQLYYPLGRVPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                            +P +L     T   +       N+   G + G           
Sbjct: 175 ANVAVLGGANPAYWLFINPDKLAANKLTAEDIINAIKSQNSVAIGGLVGGPPATGDQAYT 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +          L     N         + +S    G     +   + I        D 
Sbjct: 235 YPI----------LVENNGNLVSIEDFNNLIVSRTTSGNLLLLKDIGEVIYGSNTFTADA 284

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                +          +     A + P                S  
Sbjct: 285 IDVNGHPAMTLAVYQTPDSNALDVSNDVVKVIDQFAAAAPPGVNVSQIYNIGQFIESSVE 344

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LVL++LF+ +   +  ++   +I +++I T A L +   ++   ++ G+
Sbjct: 345 GVVDALGLAIVLVLLILFLFLQNWRATVIPSLAIPISLIGTFAFLKVFDFSINQLTLLGL 404

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  GL VD  I+V E + +          +        +  +  + +  +   V + F+
Sbjct: 405 VLATGLVVDDAIVVIEAVSKNIESGMRPRQAALACMGELFGALVATALALMAVFVPVAFY 464

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
               G   + FA+T+  SI IS F A++    +   I+R  K +       
Sbjct: 465 PGGIGIIYKQFALTIAFSIAISAFNALTFSPMLSGLILRSDKPREPKGWGW 515



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 81/219 (36%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R     G         + ++                      + +L       ++  
Sbjct: 863  NLYRTVLIQGAEAVGKSSGQALQAIQNLFQKQDFSNIGYAFTGLAALQLSAGSASIMVFG 922

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +++Y+ +      +   +  + T+ L +   L F A+  I+ N+ A   ++TLIG +
Sbjct: 923  LGLLIVYLVLSAQYESYVTPVIILMTVPLAMLGALAFLAIRSIDLNIYAQVGLVTLIGLA 982

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ +   +N+K   + ++  D +  S    L   + T++AA    LP+ V    G
Sbjct: 983  AKNGILIVEVAEQNLK---SGMTPSDAVIASAESRLRPILMTAIAALAGFLPLVVANGAG 1039

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                 S    +  G+VVA   S+ +  P  + +     +
Sbjct: 1040 AHSQQSLGTVIFGGLVVATVLSLGVVPPFYVVVKHLEER 1078



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 62/145 (42%), Gaps = 7/145 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +     + + +  T  F  +F    N   +  ++   G  V+D +VV + + KN+ 
Sbjct: 368 WRATVIPSLAIPISLIGTFAFLKVFDFSINQLTLLGLVLATGLVVDDAIVVIEAVSKNI- 426

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
              + +  R      + E  G  V T++A     +P+A + G    +   FA+ +AF I 
Sbjct: 427 --ESGMRPRQAALACMGELFGALVATALALMAVFVPVAFYPGGIGIIYKQFALTIAFSIA 484

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
           ++A +++   +P+L  +     K  
Sbjct: 485 ISAFNAL-TFSPMLSGLILRSDKPR 508


>gi|294102206|ref|YP_003554064.1| acriflavin resistance protein [Aminobacterium colombiense DSM
           12261]
 gi|293617186|gb|ADE57340.1| acriflavin resistance protein [Aminobacterium colombiense DSM
           12261]
          Length = 1031

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/675 (9%), Positives = 178/675 (26%), Gaps = 42/675 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R    ++I    +   G+L      + +     FP                     +  
Sbjct: 8   LRRPVTVLIGTFALIFFGILAMRNMGMERIPDVDFPVVA--------------VSTTMVG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                ++  +    +E  + +        +  + ++ + + F   R  +  A  V   + 
Sbjct: 54  ASPTVIDNDITDVLEEKLNTISGIENIRSNSYEGRSLVIVEFELGRNIDAAAADVRDKVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S L  + +  ++      +  ++               QS    +   + +   +  
Sbjct: 114 LAISDLPTEAETPIVQKFNAGDSPVITLGVMGTAPYK---IQSHFADKVMKEHLQTVDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      ++    DP+ L     T   +       +               S    
Sbjct: 171 GSVETIGLREREVRIWLDPALLESRNLTVKDIKDAIKDKHVELPAGRLESERRELS---- 226

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                 + + G + +           + + ++                 +      +   
Sbjct: 227 ------IRLEGEYASV----------QELEELPIVSRNGAVIRLRDVARVEDGYEDLRSI 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +       +   +  F  +        L           + +   G    S +
Sbjct: 271 ATYNGEPVILLEIRKQRGANEVFLADGVYRELDSLNKLVPEGVKIEMLDDTSGFIRKSMA 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I  GL  +++   +   +   V   +I + ++ +L +L  LG T+   S+ G+
Sbjct: 331 GVLSDTLIGIGLCSLIMLFFLRTIRATFVTVVTIPVCLLGSLIVLRALGITINNLSMMGL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD+  +V E I       +    +   G S    ++     T +     +   
Sbjct: 391 SLAVGMVVDATTVVLENIHRHLENGKLPMQAASEGTSEVGFSVLAGAATTICVFAPIASM 450

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP-- 535
           G   G     F IT+ ++I+IS+  ++++   +   I+R      I +   +    +   
Sbjct: 451 GGIIGRFFYAFGITVVMTIVISLVLSLTLTPFLCSRILRKDHPGKIALRIEAFLVRLEEA 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               + F     + V  +          +           +      +    P   S+  
Sbjct: 511 YKKGLAFSLKHRFIVLGAAAGIFALGIFIAGFLGTGFFPSEDRGSFSINFELPAGASLAE 570

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S     ++G     + +    +         +       + ++ +           +  +
Sbjct: 571 SRKFMSELGVAVRDHAEVAYTYGTIGSGIGQEVNKGKLAVTLIPRNQRATSTEIMGKMRK 630

Query: 656 IVGPKISRELIRKGI 670
                   EL     
Sbjct: 631 QFSNYKDVELTYGTW 645



 Score = 92.4 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/224 (13%), Positives = 96/224 (42%), Gaps = 7/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   + +        +   +  ++           +I+       K  +   ++  + +
Sbjct: 785  DRQRSLTISANTAGISSGEGMTLVMGTFRKYAPTDGSIRIVPTGMSKHMKSNFKELFMAL 844

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             I+ I + + + ++F+ + +    + +L L  T   G   L GIE ++ ++  ++ L+G 
Sbjct: 845  AIAIILVYMVMAVQFESFMYPFMVMFSLPLATTGVFGILLLAGIELDMMSMMGIILLVGI 904

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
             VN+ +++ D      +   +    R  + ++    L   + T+++  I+ +P+A+    
Sbjct: 905  VVNNAIILVDFAN---QRKASGCDRRTAMQEAAPLRLRPILMTALSTSIAAVPIALGLSE 961

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG +    +  +  G++ +   ++F+   + + + D + K A++
Sbjct: 962  GGEIRQPMSTAVIGGMLTSTFLTLFVIPAVYVILGDVKEKAAQV 1005



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 77/247 (31%), Gaps = 11/247 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R         +            ++ L+ +      +  + + V +++  +  L     
Sbjct: 254 LRDVARVEDGYEDLRSIATYNGEPVILLEIRKQRGANEVFLADGVYRELDSLNKLVPEGV 313

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAM----LIYIWIRFKWYFALGAITTLILDITKTLG 709
              +    S  + +     +  + I +    LI ++           + T+ + +  +L 
Sbjct: 314 KIEMLDDTSGFIRKSMAGVLSDTLIGIGLCSLIMLFFLRTIRATFVTVVTIPVCLLGSLI 373

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                GI  N  ++  +   +G  V+   VV + +    +             +  +E  
Sbjct: 374 VLRALGITINNLSMMGLSLAVGMVVDATTVVLENIH---RHLENGKLPMQAASEGTSEVG 430

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +  +        P+A  GG +     +F I +   IV++   S+    P L      
Sbjct: 431 FSVLAGAATTICVFAPIASMGGIIGRFFYAFGITVVMTIVISLVLSL-TLTPFLCSRILR 489

Query: 827 RAKNARI 833
           +    +I
Sbjct: 490 KDHPGKI 496


>gi|37676872|ref|NP_937268.1| preprotein translocase subunit SecF [Vibrio vulnificus YJ016]
 gi|320158963|ref|YP_004191341.1| protein-export membrane protein SecF [Vibrio vulnificus MO6-24/O]
 gi|37201416|dbj|BAC97238.1| preprotein translocase subunit SecF [Vibrio vulnificus YJ016]
 gi|319934275|gb|ADV89138.1| protein-export membrane protein SecF [Vibrio vulnificus MO6-24/O]
          Length = 300

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 147/290 (50%), Gaps = 6/290 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +       R+    IS+   + S+  L   GLN G+DF GG+   V  +  +    +  
Sbjct: 4   FMKKHIRAIRYLTSVISLALMVVSLVALGLRGLNLGLDFTGGMVTEVKLDAGLTNHQLLD 63

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L+ +     +      E  +++R     G++ A       +++ +  +    T  +  +
Sbjct: 64  QLKPVLGESTTVTKSGEEGRWIIRYSLPEGETQAPN-----IQQVLDGVSHHVTTISNSV 118

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG ++ ++L+ +G + ++IS + +L Y+  RF+W  A G++  L+ D+   LGFFA+  +
Sbjct: 119 VGSQVGQDLVDQGGMALLISILCILGYLCFRFEWRLASGSLLALLHDVVLVLGFFAITQM 178

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT  AA+L ++GYS+ND +++ DR+R+ + +   + +  ++ D+++  T  R++ TS
Sbjct: 179 EFNLTVFAAILAILGYSLNDSIIIADRIRE-LLIAKQNETTENINDQAVLGTFSRTMVTS 237

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               I++  +   GG+ +  F+  M  G++    SSI I   +  +++  
Sbjct: 238 GTTLITIAALWFMGGNALEGFSTAMFIGVLSGTWSSISIGTVLPEWLHLK 287


>gi|299148058|ref|ZP_07041121.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_23]
 gi|298514241|gb|EFI38127.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_23]
          Length = 1065

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 71/694 (10%), Positives = 181/694 (26%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFSLPVEQYPDIAPPTIM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S     +  IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSSATNSGSVSITVYFKQGTDPDMAAVNVQNRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +               S  I      QI       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSILQMFSLYSPDDSYDENFLSNYISINLKPQILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +            + P  + Q     + ++      N       FG            
Sbjct: 175 DLMIMGGEYSMRVWMK-PDVMAQYKLIPSDITGVLAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                +I           
Sbjct: 234 YTGRLI----------------TPEEFGDIVIRSTDNGEVLKLKDVADIQLGQDSYAYHG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +     +    L                   +      S   
Sbjct: 278 GMDGHPGVSCMVFQTAGSNATEVNQNIDKLLEEASKDLPKGVELTQMMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I ++++ T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDFRSTLIPLVGIVVSLVGTFAFMAIAGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIIVVEAVQARFDVGYRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 GGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLKPYINEDGTQKNNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           I + F++ R+    +     +  + L+     +   D   G+    +
Sbjct: 518 NSAFDMMVDKYKTIVLFFIKRRWLTWSLLACSVVLLVLLMNNTKTSLVPDEDQGVIFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +            +       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLTTTDKVMERIEKRLIEIPQLKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q+        + ++    +  +    I
Sbjct: 638 PGDEDNVQSVIGQVYARTADIKDASVFAISPGMI 671



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 123/364 (33%), Gaps = 9/364 (2%)

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+++    L+         F        L      IS V  +MI    Y     +  + +
Sbjct: 135 TSILQMFSLYSPDDSYDENFLSNYISINLKPQILRISGVGDLMIMGGEYSMRVWMKPDVM 194

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +++ LIP  I              S   +               I  +    + + +   
Sbjct: 195 AQYKLIPSDITGVLAEQNIESATGSFGENSDETYQYTMKYTGRLITPEEFGDIVIRSTDN 254

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            ++  ++   +     D    +   + +  V            T V + + K + E    
Sbjct: 255 GEVLKLKDVADIQLGQDSYAYHGGMDGHPGVSCMVFQTAGSNATEVNQNIDKLLEEASKD 314

Query: 649 STIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
                        +  L       +  +I + I +++ +++    +   L  +  +++ +
Sbjct: 315 LPKGVELTQMMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQDFRSTLIPLVGIVVSL 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T  F A+ G   NL  + A++ +IG  V+D ++V + ++    +   S     +   +
Sbjct: 375 VGTFAFMAIAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQARFDVGYRSSYMASI--DA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +       + +S+      +P++  GG+       F + MA  + ++A +++ ++  +  
Sbjct: 433 MKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVAVGISAINALTLSPALCA 492

Query: 822 FIYD 825
            +  
Sbjct: 493 LLLK 496



 Score = 62.4 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 77/253 (30%), Gaps = 12/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E  ++
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGDAIKAVQETAEQ 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I  GI  ++I  I   +Y      +      + ++
Sbjct: 850  SLPKGYGYDYGGITREENQQSGTTIIIFGICFLMIYLILSALY----ESFIIPFAVLLSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRD 759
               +  +  F  +FG+E N+     ++ LIG      +++     +         +    
Sbjct: 906  PCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERRKAGMGLIA 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +    L   + T++     + P+ +    G +   S    +  G+ +   + +FI 
Sbjct: 962  SAVSAAKARLRPILMTALTMIFGLFPLMMSSGVGANGNRSLGTGVVGGMTIGTLALLFIV 1021

Query: 817  APILLFIYDWRAK 829
              + +     + +
Sbjct: 1022 PTLFIAFQWLQER 1034


>gi|92117062|ref|YP_576791.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
 gi|91799956|gb|ABE62331.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
          Length = 1048

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/622 (11%), Positives = 164/622 (26%), Gaps = 45/622 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I  +GL+       P   +   P                     L   
Sbjct: 11  RYPIATSLLMAGILFVGLVA-----FPLLPVAPLPQVDFPTIQ---------VSATLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       IT+ F  +R  +  A+ +   +  
Sbjct: 57  SPETMASSVAQPLERQMAQIPGIAQMTSTSSIGSTAITIQFDLNRNIDGAANDIQGAINA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              S ++   +           S +   Q   QI       
Sbjct: 117 AGGQLPKNLPSPPTYRKVNPADSPIML-LSATSDTLPLTTVSDDTDAQMAQQISQIAGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  + DP++L     +   +     L                       
Sbjct: 176 QVFVGGQQKPAIRIQIDPAKLVAKRLSLEDIRSQITL--------------------TTV 215

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G       AN      K   D+                             
Sbjct: 216 NNPKGSIDGGTRSYTIYANDQLTASKDWNDVVIAYRNGGPLRIRDIGRAVSGPEDNKRAA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   +   +   T++        L A   P     +          +   
Sbjct: 276 WANGERGVFLVIFKQPGANVIDTVDRIKAELPKLIAAIPPAIKIKIISDRTTTIRAAVDD 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +      ++   ++ L ++   AL+   G +L   S+  + 
Sbjct: 336 VQFTLLITIVLVVMVIFLFLRSFWATIIPSVTVPLALLGACALMWPFGYSLDNLSLMALT 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I     + ++   +   G S    TI   +I+ +   + L   G
Sbjct: 396 ISVGFVVDDAIVMLENISRYIEQGETPMAAALKGASEIGFTIMSISISLVAVLIPLLLMG 455

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ ++I +S+  ++++   M    +R +                   +
Sbjct: 456 GIIGRLFREFAVTLAMAIFVSLVVSLTLTPMMASRFLRNQHNVRHGKLYQVSERGFNAML 515

Query: 539 AIQFMR-------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                         R   +   +   +     +      +     G I     A + +  
Sbjct: 516 DAYRRGLDLVLRWRRTTLLVFFLTLGLSVYLFVIIPKGFFPQQDNGMILGTSEAAQDISF 575

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
             ++   E L    ++      
Sbjct: 576 DEMKKKQEELGQIVMADPGVAS 597



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 88/260 (33%), Gaps = 10/260 (3%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +T   N  +         V+A R      +R    ++   + + +         V L   
Sbjct: 229 YTIYANDQLTASKDWNDVVIAYRNGGPLRIRDIGRAVSGPEDNKRAAWANGERGVFLVIF 288

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK----GIVGVIISAIAM 680
                     ++ +K ++ +++          +    +  +           +I   + +
Sbjct: 289 KQPGANVIDTVDRIKAELPKLIAAIPPAIKIKIISDRTTTIRAAVDDVQFTLLITIVLVV 348

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++       ++  +    T+ L +         FG   +  ++ A+   +G+ V+D +V+
Sbjct: 349 MVIFLFLRSFWATIIPSVTVPLALLGACALMWPFGYSLDNLSLMALTISVGFVVDDAIVM 408

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSF 797
            + +    +      +      K  +E     +  S++    ++P+ + GG +      F
Sbjct: 409 LENI---SRYIEQGETPMAAALKGASEIGFTIMSISISLVAVLIPLLLMGGIIGRLFREF 465

Query: 798 AIPMAFGIVVAASSSIFIAA 817
           A+ +A  I V+   S+ +  
Sbjct: 466 AVTLAMAIFVSLVVSLTLTP 485



 Score = 46.6 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 93/218 (42%), Gaps = 6/218 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   + + +    +VA  +  + ++  + E+   +T+  +     +  ++ +    + +
Sbjct: 804  GQFPAITISFNLAQNVALGQATDAIQSAMRELGTPATLNGSFQGTAQAFQQSLGTVPLLI 863

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + + + + I ++ +   +  ++TL       L    LFG +F+L A+  ++ LIG 
Sbjct: 864  LAALVVVYLILGILYESYIHPITILSTLPSAGVGALATLMLFGYDFSLIALIGIILLIGI 923

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D            +S  + I K+        + T+MAA +  +P+ +    
Sbjct: 924  VKKNGIMMVD--FAIAAEREEHLSPEESIRKAALLRFRPIMMTTMAAMLGGVPLMLGTGT 981

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G  +       M  G++V+ + ++F    + L++  + 
Sbjct: 982  GAEIRQPLGYAMVGGLLVSQALTLFTTPVVYLYLDQFS 1019


>gi|56751373|ref|YP_172074.1| preprotein translocase subunit SecF [Synechococcus elongatus PCC
           6301]
 gi|56686332|dbj|BAD79554.1| protein-export membrane protein SecF [Synechococcus elongatus PCC
           6301]
          Length = 314

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 150/299 (50%), Gaps = 19/299 (6%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGL----NYGIDFKGGIQLGVL-------ANRPVDL 591
            R R+W +   ++    +               G+DF GG +L +         +R ++ 
Sbjct: 8   QRRRWWWISAILVIVSIAGMATSWLQFGGPVRPGLDFVGGTRLQLERDCTKAQCDRRLEA 67

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R  L S  +   + Q    E+   V +        A+T++   + ++     P    
Sbjct: 68  GAIREVLTSAGLERSNVQVIGQEQQGFV-ISTGDLSPEARTQLQNKLSEQFGPFDP--QQ 124

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP + ++L+  G++ +++S   +L+Y+  RF+  +AL AI  L  D+  T G F
Sbjct: 125 TQIDTVGPVLGQQLLSSGLLALLVSFAGILVYLNFRFQRDYALLAILALFHDVFITAGVF 184

Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A  GI    E +   + A+LT+ G+SVND VV+YDR+R+   L+       +++D S+N+
Sbjct: 185 AWLGILAGYEADSLFIVALLTITGFSVNDTVVIYDRIRETNSLFP-EDDIDEIVDLSVNQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TLGRS+ T++   + ++ + ++GG+ + +FA+ +  G V+ A SSIFIA+ +L +    
Sbjct: 244 TLGRSINTTLTTLLPLISIYIFGGATLQNFALALIVGFVLGAYSSIFIASTLLGWWRKR 302


>gi|329938962|ref|ZP_08288336.1| preprotein translocase subunit SecD [Streptomyces griseoaurantiacus
           M045]
 gi|329301847|gb|EGG45740.1| preprotein translocase subunit SecD [Streptomyces griseoaurantiacus
           M045]
          Length = 591

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 114/550 (20%), Positives = 215/550 (39%), Gaps = 50/550 (9%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DE 62
             +IL +++   G + A  +  P+                LG+DL GG+ + L+      
Sbjct: 20  LALILIAIVALTGGMFASGHTTPR----------------LGIDLAGGTSITLKAKADQG 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
                  +    + +   +   G+    ++   N  I ++       +   ++V    + 
Sbjct: 64  SAINKANMDTAVEIMNRRVNGLGVSEAEVQTQGNDNIIVNIPKGTNSKEAREQVGTTAKL 123

Query: 122 -VNSKLNVDPKKN-------------------LLVTTTEKEISIVLSQNNIDQVISHAIE 161
                L  +                          +          S+ + D+  S    
Sbjct: 124 YFRPVLATEASGPAANASPSTSSSESPGASPSGSSSAKVDAPDSKESKESKDKTSSSPSS 183

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
            +    R     +    S     G  +       + D     Q           +    +
Sbjct: 184 TATSQGRAVTGALKADASPSSSAGGKKSSSTGASDDDNKLQAQYAALDCSKPSDRAAAGD 243

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD-PKTHKPVVDISFDEMGAR 280
           + K     V   ++       +     + G  +  A A FD        V ++F   G++
Sbjct: 244 NAKPGDSTVGCGKNQGVWFKYLLGPAAVDGTEVKKAQAVFDTQGASGWQVQMTFTGSGSK 303

Query: 281 RFFEVTRDNIGKPLAVV-----LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
           +F ++T     K          LDG V+++P + Q+I  G A+ISG+FT E A  L+ ML
Sbjct: 304 KFADITGQLAQKQQPQNEFGIVLDGEVVSSPFVQQSITGGNAEISGSFTQEEAQGLSNML 363

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
             G+LP+         V A LG + ++ G  A   GL L++++++  Y    L+A  S+ 
Sbjct: 364 SYGALPLSFEEQSVTTVTAALGGEQLHAGLIAGAIGLALVIIYLVAYYRGLSLIAIASLL 423

Query: 396 LNVILTLALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
           ++  LT  ++SLLG T+     LP++ G ++ IG+  DS I+  ERIR+E R+ +++  +
Sbjct: 424 VSATLTYVIMSLLGPTIGFALNLPAVCGAIVAIGITADSFIVFFERIRDEIREGRTLRPA 483

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           ++  + RA  TI  S+  + +A  VLF    G V+GFA T+GL+ L+ +       + +M
Sbjct: 484 VERAWPRARRTILVSDFVSFLAAAVLFVVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPLM 543

Query: 512 IFIIRYKKMK 521
             + R +   
Sbjct: 544 TILARRRFFH 553



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 73/184 (39%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
               Q+   V   +  E +  G++   I    ++IY+   ++   +L AI +L++  T T
Sbjct: 371 SFEEQSVTTVTAALGGEQLHAGLIAGAIGLALVIIYLVAYYR-GLSLIAIASLLVSATLT 429

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               +L G       NL AV   +  IG + +  +V ++R+R  ++      + R  +++
Sbjct: 430 YVIMSLLGPTIGFALNLPAVCGAIVAIGITADSFIVFFERIRDEIRE---GRTLRPAVER 486

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +        + +   +F++   + V     +  FA  +    ++          P++  +
Sbjct: 487 AWPRARRTILVSDFVSFLAAAVLFVVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPLMTIL 546

Query: 824 YDWR 827
              R
Sbjct: 547 ARRR 550


>gi|37523597|ref|NP_926974.1| RND efflux transporter [Gloeobacter violaceus PCC 7421]
 gi|35214602|dbj|BAC91969.1| glr4028 [Gloeobacter violaceus PCC 7421]
          Length = 1041

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/687 (11%), Positives = 185/687 (26%), Gaps = 48/687 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEV 60
           R      ++   +   GL+           ++  P+   P  ++S GL            
Sbjct: 9   RRPVATTLVMLGVLFFGLIA-----YRLLPVNDLPNVDFPTIQVSAGL----------PG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    +   S +        S      +ITL F   R  +  A  V   + 
Sbjct: 54  ASPETMAAAVATPLERQLSAIPGLDSMSSSSSLGSTQITLQFDLERDIDAAAQDVQTAIA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S+L                   ++   +++                   +I +    
Sbjct: 114 TAASQLPPGLPTPPSYRKVNPAEQPIMI-LSLNSPTLPLWRVDEYAQTLIAQRISMVSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q L        +  + DP+ L        ++       N +        ++   +  + 
Sbjct: 173 AQVLVFGAQKYAVRIQVDPNALAARGIGLDEVESAIRTGNTNLPTGYVDGKYRAFTIESD 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + +                          +                 +   +      
Sbjct: 233 GQLLNAA--------------------AFRPLVVAYRNGSPVRLEQLGKVIDSVENDKVA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +  ++    ++    L    R+         +      +   S  
Sbjct: 273 GWYNGTRSITLGVQRQPGVNTIAVVDAIEALLPTFRSQIPGAVNLDIVFDRSESIRHSVE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  +  GLV++V+F+ +      ++   ++ L+++ T A++ LLG +L   S+  +
Sbjct: 333 DVQFTLVLAIGLVVLVIFLFLRNLSATIIPSLAVPLSLVATFAVMYLLGFSLNNLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I+V E I       +S   +   G      TI    ++ +   + + F 
Sbjct: 393 TLSVGFVVDDAIVVLENIVRRQEMGESPMEAAFNGSREITFTIISMTLSLVAVFLPVLFM 452

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLS 529
           GG   R    FAIT+  +IL+S F ++++   +                ++  I      
Sbjct: 453 GGILGRLFNEFAITIATAILVSGFVSLTLTPMLCSRFLRAESVHPSSRSRLYQISEGAFD 512

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                 D      +R R   +  S      ++ L       +      G  +        
Sbjct: 513 ALTRAYDRSLQWVLRHRVLTMLASAAVLAATVYLFNAIPKGFIPSEDNGQIIVTTEAAQG 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                 +  +   +  +         N  V      G S A    + +  +   +     
Sbjct: 573 ISFADMARKQQQVVAVLRQDPAIDGTNASVGSGGPAGASNAGRVFVRLKPRSERDSAQDV 632

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIIS 676
             +    +       +  +    + I 
Sbjct: 633 IQRLRPKLAQVTGIRVFMQQPPAIRIG 659



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 90/244 (36%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L  +   ++S++   ++          L   +    +++A    +E + 
Sbjct: 245 VVAYRNGSPVRLEQLGKVIDSVENDKVAGWYNGTRSITLGVQRQPGVNTIAVVDAIEALL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
                 +P +   +      +  R  +      ++++   +++ I++  +     +    
Sbjct: 305 PTFRSQIPGAVNLDIVFDRSESIRHSVEDVQFTLVLAIGLVVLVIFLFLRNLSATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L +  T     L G   N  ++ A+   +G+ V+D +VV + +   ++      S  
Sbjct: 365 AVPLSLVATFAVMYLLGFSLNNLSLMALTLSVGFVVDDAIVVLENI---VRRQEMGESPM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFI 815
           +       E     +  +++     LP+   GG +      FAI +A  I+V+   S+ +
Sbjct: 422 EAAFNGSREITFTIISMTLSLVAVFLPVLFMGGILGRLFNEFAITIATAILVSGFVSLTL 481

Query: 816 AAPI 819
              +
Sbjct: 482 TPML 485



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 85/245 (34%), Gaps = 11/245 (4%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V LS V      +    ++             L+     S A   +     + + + +  
Sbjct: 782  VPLSTVAKLTPGVGPLSVNHLGQFTAATISFNLKPGVSLSEASAIIERRAAETLPDTIAT 841

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
            S   N E           +   + + ++ + + + + I ++ +   L  ++ L       
Sbjct: 842  SFQGNAEAFQSS-----TQNLGLLLAVAILVIYLVLGILYESFIHPLTILSGLPSAGFGA 896

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    LFG + ++     +L L+G    + +++ D   +  +         D I  +   
Sbjct: 897  LLTLMLFGFDLDVYGFVGLLLLVGIVKKNAIIMIDFALEAQRKDGKR--PEDAIYAAALV 954

Query: 768  TLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 + T+++A    +P+      G        + +  G++ +   +++I   I L++ 
Sbjct: 955  RFRPIMMTTVSAIAGAIPIAIGFGAGAETRQPLGLAVVGGLLFSQWLTLYITPVIYLYLD 1014

Query: 825  DWRAK 829
             ++ +
Sbjct: 1015 RFQER 1019


>gi|148658075|ref|YP_001278280.1| protein-export membrane protein SecF [Roseiflexus sp. RS-1]
 gi|148570185|gb|ABQ92330.1| protein translocase subunit secF [Roseiflexus sp. RS-1]
          Length = 324

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 73/304 (24%), Positives = 141/304 (46%), Gaps = 17/304 (5%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV----DLSVVRSNLE 599
           + R+W   +S++  I  +  L   GL  GIDF GG    +          D   +R+   
Sbjct: 6   KLRYWWFALSLVIIIPGLVSLAIFGLRLGIDFSGGALWDIQFVERAPGQLDTERIRAIFA 65

Query: 600 SLQIGDISFQNFDGEKNFLVR----LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +        Q  + + +        ++ +           + V   ++        Q  +
Sbjct: 66  AQGFEGALVQLTESQVDGRTVASAVVRTRSLSETDPETQRQRVLSALSAEYGTVNQQALQ 125

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGF 710
            VG  +S E  R  ++ VI + +A+L+Y+ + F+       + + AI  +I D+   LG 
Sbjct: 126 SVGATVSAESTRSAVIAVIAACVAILVYLTLAFRRAPHPVRYGICAILAMIHDVLLVLGV 185

Query: 711 FALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            ++ G    +E +   + A+LT+I +SV+D +VV+DR+R+N+     + +F D+++ SI 
Sbjct: 186 ASILGVVIGMEVDALFLTALLTVISFSVHDTIVVFDRIRENLVNRRPTETFDDIVNHSIV 245

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +TL RSV T +  F +++ + ++GG  I +  + +  G+V    SSIF AA +L+   + 
Sbjct: 246 QTLPRSVNTQLTTFFTLMALILFGGESIRNLVLILLIGLVSGTYSSIFNAAQLLVVWENR 305

Query: 827 RAKN 830
               
Sbjct: 306 EWSR 309


>gi|319787267|ref|YP_004146742.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465779|gb|ADV27511.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 1059

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 161/550 (29%), Gaps = 36/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+       P   +  +P  +P + +            V     
Sbjct: 10  RPIFAAVLSIVIFAAGLISI-----PLLPIGEYPDVVPPSVVVR---------TVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFL 119
              ++  +    +E  + +  E +         +   ++T++F      +  A +V   +
Sbjct: 56  PKVISETVATPLEEAINGV--EDMMYLKSVAGSDGVLQLTVTFRPGTDPDEAAVRVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +  + +++           ++     +     D++     
Sbjct: 114 AQAQARLPEDVRRQGITTQKQSPVFLMVVHLTSTDGQYDSLYLRNYMRLHVKDELARIPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP ++     T   +       N        G   +      
Sbjct: 174 VGDAQLFGGGDYAMRIWLDPDKVAARDMTAGDVLRAVREQNVQVSAGQIGAEPMPGGSDF 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  K  +  +              +    +       +         I         
Sbjct: 234 LLPINAKGRLESVE-------------EFGGIVLKSGADGQVVRLSDVARIELAAGDYTL 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +      A +R    P                S 
Sbjct: 281 RARLDGKNAAAIGIFQAPGANALEIRDAVVGKMAEIRQTLPPGVEIQSIYDTTIFVRDSI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T A+L +LG ++   ++ G
Sbjct: 341 KSVITTLMEAVFLVVLVVILFLQTWRASIIPLLAVPVSVVGTFAVLYVLGYSINTLTLFG 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +        +   +  +        I    +      V + F
Sbjct: 401 LVLAIGIVVDDAIVVVENVERHIEDGATPLQAAHLAMREVSGPIIAIALVLCAVFVPMAF 460

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIP 535
                G   + FA+T+ +S +IS   ++++  A+    +  +   K      + R F   
Sbjct: 461 LTGVTGQFYKQFAVTIAISTVISAINSLTLSPALAAKLLRPHGAEKDRPTRIIDRLFGWL 520

Query: 536 DCIAIQFMRA 545
                +F + 
Sbjct: 521 FRPFNRFFKR 530



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 54/139 (38%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     + G   N   +  ++  IG  V+D +VV + +    +
Sbjct: 365 WRASIIPLLAVPVSVVGTFAVLYVLGYSINTLTLFGLVLAIGIVVDDAIVVVENV---ER 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                 +       ++ E  G  +  ++      +PMA   G        FA+ +A   V
Sbjct: 422 HIEDGATPLQAAHLAMREVSGPIIAIALVLCAVFVPMAFLTGVTGQFYKQFAVTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAINSLTLSPALAAKLLR 500



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 6/149 (4%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   W   L  I  + + +   L    L G + N+     ++ L+G +  + +++ +  
Sbjct: 896  ALYESWTLPLAVILIVPMTLLSALLGVWLTGGDNNVFVQVGLVVLMGLACKNAILIVEFA 955

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
            R+   L        +   ++    L   V TS+A     +P+ +    G  V     I +
Sbjct: 956  RE---LEMQGKGIIESALEACRLRLRPIVMTSVAFIAGTVPLVLSHGAGAEVRSVTGITV 1012

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              G++      +F+     + +     + 
Sbjct: 1013 FAGMLGVTLFGLFLTPVFYVALRKLANRP 1041


>gi|224026806|ref|ZP_03645172.1| hypothetical protein BACCOPRO_03563 [Bacteroides coprophilus DSM
           18228]
 gi|224020042|gb|EEF78040.1| hypothetical protein BACCOPRO_03563 [Bacteroides coprophilus DSM
           18228]
          Length = 1044

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/630 (10%), Positives = 169/630 (26%), Gaps = 50/630 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +GL+           ++++P   P   +                  
Sbjct: 9   RPILACVISVLILMLGLISLF-----NLPMEQYPDIAPPTVM---------VSTSYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   + +  +E  + ++       +     +  IT+ F      +         +  
Sbjct: 55  AETVQKSVIVPLEEAINGVENMTYMTSTSTNNGSGSITVYFKQGTDPDMATINTKNRVSE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  K  +     +  ++ +               +         ++       
Sbjct: 115 AEGLLPAEVTKVGVTVEKRQNSTLKILTLYSPDNSYDQTFINNYFKINIEPRLSRITGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P  + Q       +       N        G            
Sbjct: 175 NVNVMG-GDYAMRIWLNPQVMAQYSLVPDDVISALGDQNVEAATGTLGEDSENTYQYTLK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  + +    +                 +           
Sbjct: 234 YRGR----------------YETSEEFGNIVIKSLANGEVLRLKDIAKVELGAQSYAYNS 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        + S  A  + N  I+    L   +        +             S   
Sbjct: 278 EINGHPGATCMISQTAGSNANEIIQEIDKLTEEISKELPKGLVLSDLMSTKDFLDASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  ++   SI +++I T A L L G +L L ++  +V
Sbjct: 338 VVKTLIEAILLVILVVYVFLQSVRSTIIPAVSIIVSLIGTFAFLYLAGFSLNLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++ +  +  +S + +         + I  +++  +   +   F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQAKFDEGERSPYKATTGAMDGIAAAIVTTSLVFMAVFIPSSFM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------------KKMKSI 523
           GG +      F +TM +++ IS   A+++  A+   I+                +   + 
Sbjct: 458 GGTSGTFYMQFGLTMAVAVGISAINALTLSPALCALIMTPHIDTTTGQKLSFSTRFHHAF 517

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +         + +   F R    G  +    ++ ++ +  T       +  G I + V
Sbjct: 518 EASFNRLILRYKNGVKWFFRRKWVVGTALVASMALLAVLMKTTKTGLVPDEDMGCIFMNV 577

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                  LS     +  ++           
Sbjct: 578 TTPPGSSLSQTIKAMSEVENSIKDIPQIMS 607



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 91/231 (39%), Gaps = 6/231 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +       Q    + +         +  Q    ++    + ++ + ++I++ +P   + 
Sbjct: 262 DIAKVELGAQSYAYNSEINGHPGATCMISQTAGSNANEIIQEIDKLTEEISKELPKGLVL 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           +  +         I + +  +I + + +++ +++        +    ++I+ +  T  F 
Sbjct: 322 SDLMSTKDFLDASIHEVVKTLIEAILLVILVVYVFLQSVRSTIIPAVSIIVSLIGTFAFL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   NL  + A++ +IG  V+D +VV + ++          S       +++     
Sbjct: 382 YLAGFSLNLLTLFALVLVIGTVVDDAIVVVEAVQAKFDEGER--SPYKATTGAMDGIAAA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V TS+      +P +  GG+       F + MA  + ++A +++ ++  +
Sbjct: 440 IVTTSLVFMAVFIPSSFMGGTSGTFYMQFGLTMAVAVGISAINALTLSPAL 490



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 55/152 (36%), Gaps = 6/152 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            LI   +    +  L  + ++   +  +  F  ++G+E N+     ++ LIG      +++
Sbjct: 886  LILCALYESIFVPLAVMLSVPFGLMGSFLFAKMWGLENNIYMQTGLIMLIGLLAKTAILL 945

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---F 797
             +            ++       +    L   + T++   I +LP+    G+        
Sbjct: 946  TE---YASARRRQGMTIAQAAVSAAGVRLRPILMTALTMIIGLLPLVFASGAGANGNISL 1002

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +    G++V   + +F+   + +     + K
Sbjct: 1003 GVGTVGGMIVGTLALLFVVPTLFIVFQTLQEK 1034


>gi|81298952|ref|YP_399160.1| preprotein translocase subunit SecF [Synechococcus elongatus PCC
           7942]
 gi|81167833|gb|ABB56173.1| protein translocase subunit secF [Synechococcus elongatus PCC 7942]
          Length = 314

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 152/299 (50%), Gaps = 19/299 (6%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGL----NYGIDFKGGIQLGVL-------ANRPVDL 591
            R R+W +   ++    +   +           G+DF GG +L +         +RP++ 
Sbjct: 8   QRRRWWWISAILVIVSIAGMAISWLQFGGPVRPGLDFVGGTRLQLERDCTKAQCDRPLEA 67

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R  L S  +   + Q    E+   V +        A+T++   + ++     P    
Sbjct: 68  GAIREVLTSAGLERSNVQVIGQEQQGFV-ISTGDLSPEARTQLQNKLSEQFGPFDP--QQ 124

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              + VGP + ++L+  G++ +++S   +L+Y+  RF+  +AL AI  L  D+  T G F
Sbjct: 125 TQIDTVGPVLGQQLLSSGLLALLVSFAGILVYLNFRFQRDYALLAILALFHDVFITAGVF 184

Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A  GI    E +   + A+LT+ G+SVND VV+YDR+R+   L+       +++D S+N+
Sbjct: 185 AWLGILAGYEADSLFIVALLTITGFSVNDTVVIYDRIRETNSLFP-EDDIDEIVDLSVNQ 243

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TLGRS+ T++   + ++ + ++GG+ + +FA+ +  G V+ A SSIFIA+ +L +    
Sbjct: 244 TLGRSINTTLTTLLPLISIYIFGGATLQNFALALIVGFVLGAYSSIFIASTLLGWWRKR 302


>gi|188583380|ref|YP_001926825.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium populi BJ001]
 gi|179346878|gb|ACB82290.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium populi BJ001]
          Length = 1064

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/548 (10%), Positives = 149/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GL+           +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLIFIGGLISLF-----AMPISEYPDVVPPSVV---------VRATFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIVETVATPIEEQINGVEGMLYMSSQATTDGIMTLTVTFRLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  +VT        ++                   +    D++   +   
Sbjct: 116 AEPRLPAIVRQLGIVTVKSSPDLTMVVHLVSPNGRYDMTYLRNYAVLNIKDRLARLDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   +   +       N      + G          Q 
Sbjct: 176 QVQLFGSGDYAMRIWLDPQKVAEHGLSAGDVVREIQAQNVEAAAGVIGASPAVPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +                 I    +      
Sbjct: 236 SLNAEGRLTSEE-------------QFGDIVVKTGENGEITRLRDIARIELGASDYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          S     +     +      A ++          +          S   
Sbjct: 283 LLDNKSAVAIPISQSPGSNAIQISDEVRRTMAEIKKNMPEGVDYQIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T A++   G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFAVMHAFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEAGLSPRDASYQAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++        +  +    L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAINSLTLSPALSALLLKDHHAPKDRLTRVLDTLLGWFFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 RFNRAFGR 530



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 56/128 (43%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSIVGTFAVMHAFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
                +S RD   +++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 425 A---GLSPRDASYQAMREVSGPII-AIALVLVAVFVPLAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAINSL 488



 Score = 44.3 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 45/114 (39%), Gaps = 10/114 (8%)

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ L+G S  + +++ +  R+   L     S      ++    L   + TSMA  + V
Sbjct: 937  IGLIVLVGLSAKNAILIVEFARE---LEFAGRSPVQAAIEASRLRLRPILMTSMAFIMGV 993

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI----YDWRAKN 830
            LP+      G  +  +  + +  G++   +  +F+     + +     + R K 
Sbjct: 994  LPLVTATGAGAEMRSAMGVAVFSGMIGVTAFGLFLTPVFYVLLRSLSGNRRLKQ 1047


>gi|326386240|ref|ZP_08207864.1| hypothetical protein Y88_2132 [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326209465|gb|EGD60258.1| hypothetical protein Y88_2132 [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 1131

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/547 (10%), Positives = 155/547 (28%), Gaps = 39/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+  +   G++  +        +   P       I           +     
Sbjct: 12  RNPVVPIVLFLGLTLTGIVSFMM-----MKVQDQPDIEFPMVI---------VSISQPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +  +  ++  + F   +      ++V   +  
Sbjct: 58  APTEIENQITQKIEASVRTIAGVDTLTSTASEGSSQTQVQFKIGQDINAAVNEVKNAVDR 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L     +  +         I       D +     + S  I      ++       
Sbjct: 118 VRGELPEGILEPQVYKLETSSEPIAYFAVAADDMTIE--QLSWFIDDTVTRRLLAIPGMA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +  +  ++    DP R+R    T  +++      N +  G    V   R +     
Sbjct: 176 EVQRAGGVDREITVTLDPERMRSQGITATEINAALRQVNVNAAGGRAEVAGSRQAVRVLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 ++S + +     +                            ++    + +    
Sbjct: 236 NARSAFDLSQVEVGLTAGHT--------------------VRLSDVADVRDGYSEITSIA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     +     S     + A    A L+              +V         
Sbjct: 276 KFNGKPVVTFSIARARGESDVAVYDAAVAELAKLQKEQGNRVRFENLFNSVSYTRDQYHT 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+F  +   +  +V+  +I L+ I T  +++L+G TL   S+  + 
Sbjct: 336 SISAMVEGAVLAVIVVFFFLRDWRSTIVSAIAIPLSSIPTFWVMTLMGFTLNTMSLLALG 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  ++ + +           +  +  + +   + +    
Sbjct: 396 LVAGVLVDDAIVEIENIVRHIRMGKTPYQAAIDAADEIGLAVVATTFSIVAVFLPVAMMP 455

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +++L S+  A  I   +  + +                ++     
Sbjct: 456 GVSGQFFKNFGLTVVVAVLFSLLVARMITPMVAAYFMTSHGEAEHGGGVWMDRYMKVLHW 515

Query: 539 AIQFMRA 545
           ++   +A
Sbjct: 516 SLDTDKA 522



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 81/256 (31%), Gaps = 7/256 (2%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                  +++G+ A   V LS V    +         +            + +    VA 
Sbjct: 239 SAFDLSQVEVGLTAGHTVRLSDVADVRDGYSEITSIAKFNGKPVVTFSIARARGESDVAV 298

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKW 690
                    K+ +                 +R+     I  ++  + +A+++  +    W
Sbjct: 299 YDAAVAELAKLQKEQGNRVRFENLFNSVSYTRDQYHTSISAMVEGAVLAVIVVFFFLRDW 358

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              + +   + L    T     L G   N  ++ A+  + G  V+D +V  + +   ++ 
Sbjct: 359 RSTIVSAIAIPLSSIPTFWVMTLMGFTLNTMSLLALGLVAGVLVDDAIVEIENI---VRH 415

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
                +       + +E     V T+ +     LP+A+  G       +F + +   ++ 
Sbjct: 416 IRMGKTPYQAAIDAADEIGLAVVATTFSIVAVFLPVAMMPGVSGQFFKNFGLTVVVAVLF 475

Query: 808 AASSSIFIAAPILLFI 823
           +   +  I   +  + 
Sbjct: 476 SLLVARMITPMVAAYF 491


>gi|326798900|ref|YP_004316719.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
 gi|326549664|gb|ADZ78049.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
          Length = 1064

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/530 (11%), Positives = 154/530 (29%), Gaps = 39/530 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++  MI  +G L        Q  + +FP   P               +     
Sbjct: 7   QRPVFAIVISIMIVFVGSLAI-----KQLPISQFPQIAPTTV---------NVFIAYPGS 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             D     +Q     L + +        I   +    +  + + F      +    +V  
Sbjct: 53  SADV---LVQSTLINLENAINGVQGMRYIATDATSAGEATLRVIFEPGTDPDQAVVRVKT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V   L    ++  +V +  +   ++                      + I +I   
Sbjct: 110 RVDQVMPLLPELVQREGVVVSPIQPSMLMYVNLYAKGKNMDEKFLYNYASVKMIPEINRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    +P R+R    +  ++       +   +    G      + 
Sbjct: 170 KGVARSQILGSRTYAMRVWLNPDRMRAYHISVDEVMDAMAEQSIVGRPGRIGQSSGIKAQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y++  K                 +  +    I        R        +       
Sbjct: 230 SLEYVLTYKGR-------------YSEPAEYENIIIRANADGERIRLGDIGKVELGSEFF 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        + +     + +  I       A ++    P     +          
Sbjct: 277 DIYSNLDGHPSASILLNQNYGSNASDVIAAVKDKLAEMKETFPPGLDYKISYDVSQFLDA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  L+   ++ ++++    ++   G ++ L ++
Sbjct: 337 SIEQVVHTLRDAFILVAIVVFVFLGDWRSTLIPILAVPVSLVGAFFVIQFFGLSINLVTL 396

Query: 418 AGIVLGIGLAVDSNILVNE--RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E    + +   + + + ++          I       +   +
Sbjct: 397 FALVLAIGIVVDDAIVVVEAVHAKFDEFPSMTPYQAVKRVLGEISGAIIAITAVMVSVFL 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            + F  G      R F+ITM  SI+IS   A+++   +   +++      
Sbjct: 457 PISFMTGPVGTFYRQFSITMASSIVISAIIALTLTPVLCAMLLKNHHTHH 506



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 7/200 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    L  +K+     +      +          +++       I+ AI + +++    
Sbjct: 305 AAVKDKLAEMKETFPPGLDYKISYDVSQFLDASIEQVVHTLRDAFILVAIVVFVFLG--- 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  I  + + +         FG+  NL  + A++  IG  V+D +VV + +    
Sbjct: 362 DWRSTLIPILAVPVSLVGAFFVIQFFGLSINLVTLFALVLAIGIVVDDAIVVVEAVHAKF 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
             + + ++    + + + E  G  +  +       LP++   G V      F+I MA  I
Sbjct: 422 DEFPS-MTPYQAVKRVLGEISGAIIAITAVMVSVFLPISFMTGPVGTFYRQFSITMASSI 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A  ++ +   +   +  
Sbjct: 481 VISAIIALTLTPVLCAMLLK 500



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 74/242 (30%), Gaps = 12/242 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V  S      +S    +I+  N                 + A   + E+ KK +    
Sbjct: 796  EMVPYSAFMKLKKSQGPNEITRYNMYNSAAIRGLPAAGYTTADAIQAIREVAKKSLP-NG 854

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                 +           E     +   +I    +   +  +++ +   L  + +L + + 
Sbjct: 855  YDIAWEGLSYDEANRGNE----SLYIFLIVLAFVYFVLAAQYESFIIPLAVVFSLPVGVF 910

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G++ ++ A   ++ L+G    + V++ +     +  +    S  +   +  
Sbjct: 911  GSFLLLKLMGLQNDIYAQIGLIMLVGLLGKNAVLIVEFA---VLKHREGASILEAAIEGA 967

Query: 766  NETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS A    ++P+ +  G   I   +       G+V      + I   +   
Sbjct: 968  KVRFRPILMTSFAFIAGLIPLIIATGAGAIGNRTIGASAMGGMVFGTVFGVIIVPGLYYI 1027

Query: 823  IY 824
              
Sbjct: 1028 FG 1029


>gi|300717530|ref|YP_003742333.1| multidrug resistance protein [Erwinia billingiae Eb661]
 gi|299063366|emb|CAX60486.1| Multidrug resistance protein [Erwinia billingiae Eb661]
          Length = 1022

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/606 (11%), Positives = 164/606 (27%), Gaps = 44/606 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLTIAILLAGVL-----GFRLLPVAPLPQVDFPVIV---------ISASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +      +I L F   R     A  V   + G 
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSTSSLGSTRIILVFDYDRDINGAARDVQGAINGA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q   ++   +    
Sbjct: 116 QSLLPTGMPSRPTYRKANPSDAPIMI-MALTSDTYSQGQLYDYASTQLAQKLSQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  + +P  L     +   +       N  +          R        
Sbjct: 175 VTVGGSSLPAVRVDLNPQALFNQGVSLDAIRETIANANQRRPQGAIEDHQQRWQLKTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                       +                N+   +  V +  +
Sbjct: 235 LQKAAD--------------------YQPLVVHYNAGAAVRLQDVANVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        L           + +        S +  
Sbjct: 275 SNAKPAILLLIRKLPEANIIDTVDRIRAEVPELSNIIPASIHLEIAQDRSPTIRASLAEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + + AI  GLV++V+F  +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQSLAISVGLVILVVFAFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHVEAGMKPLQASLQGVREVGFTVLSMSLSLIAVFLPLLMLGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G   + FA+T+ +SI IS+  ++++   M   +          +++       +    
Sbjct: 455 LIGRFFKEFAVTLSVSIAISLVISLTLTPMMCARLLRAHPQREQGRVRGFGRVLNAIQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +      +R+  +       +     +            G +   + A++ +    
Sbjct: 515 YGRSLNWVLNHSRWTLLVFLATIGLTVYLYISIPKTFMPEQDTGRVMGFIQADQSISFQA 574

Query: 594 VRSNLE 599
           +R  LE
Sbjct: 575 MRGKLE 580



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 56/150 (37%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +  + +L+           L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVGLV-ILVVFAFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTVAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +     +       + + E     +  S++     LP+ + G
Sbjct: 397 GFVVDDAIVVLENI---SRHVEAGMKPLQASLQGVREVGFTVLSMSLSLIAVFLPLLMLG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G +      FA+ ++  I ++   S+ +  
Sbjct: 454 GLIGRFFKEFAVTLSVSIAISLVISLTLTP 483


>gi|328907433|gb|EGG27199.1| preprotein translocase subunit SecD [Propionibacterium sp. P08]
          Length = 563

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 116/536 (21%), Positives = 208/536 (38%), Gaps = 48/536 (8%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             ++  ++  I + + +                P     LGLDLRGG+ + L    +D  
Sbjct: 12  RTLVIFLVVIIVMYVLMGVMRT---------WSP----KLGLDLRGGTSVTLTAKTEDGK 58

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTLFL 119
                 L+     ++  +   G+G  S+R + ++ I +S  +       E +     L  
Sbjct: 59  APSATSLEQARLIIQQRVNALGVGESSVRTMGDRNIVVSAPNVESSKLVEMVGQTAQLGF 118

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           + V ++  V  K           +               +     +  +    +    + 
Sbjct: 119 RMVYAEEPVKQKSPTPEPAKPSTLPTADPNAKASAAPEASASPKNDA-KPSAPKYNEKDP 177

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                         P  +D                       S            D +G 
Sbjct: 178 QSAAKMVKAAQEWKPTPEDQGAFDNY------------KCAKSVDSPGDKPLVTCDREGT 225

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +   V I+G  +  A +         VV++ F+ +G   F + T     K       
Sbjct: 226 TKYLLSPVAITGTQVASADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSPQNQF 285

Query: 300 GRVLTAPVINQAIP-----------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
             VL   VI+                G+A+ISG+FT ++A  LA +L+ G+LP+  +I  
Sbjct: 286 AVVLDGKVISSPQLDGSKGASCPISGGQAEISGHFTQDSAADLANVLKYGALPLSFDISS 345

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
             N+   LG + +  G  A V GL+L+  + ++ Y   GLVA  S+ +  I T A + LL
Sbjct: 346 VDNISPTLGGEQLRAGMIAGVIGLILVGAYCLLYYRGLGLVAISSLIVAGITTYAAMVLL 405

Query: 409 ----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
               G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+S+A  TI 
Sbjct: 406 GEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWSKARGTIL 465

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 466 MADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLVICFFFTHPVVTLLGRTRFW 521



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 74/184 (40%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R G++  +I  I +  Y  + ++    L AI++LI+    T
Sbjct: 340 SFDISSVDNISPTLGGEQLRAGMIAGVIGLILVGAYCLLYYR-GLGLVAISSLIVAGITT 398

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 399 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIRE---GRTLRTALQT 455

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             ++  G  +     + +S + + V     +  FA  +    V+      F   P++  +
Sbjct: 456 GWSKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLVICFFFTHPVVTLL 515

Query: 824 YDWR 827
              R
Sbjct: 516 GRTR 519


>gi|256832598|ref|YP_003161325.1| protein-export membrane protein SecD [Jonesia denitrificans DSM
           20603]
 gi|256686129|gb|ACV09022.1| protein-export membrane protein SecD [Jonesia denitrificans DSM
           20603]
          Length = 620

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 121/549 (22%), Positives = 211/549 (38%), Gaps = 36/549 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV-- 60
             PW  ++  ++       AL   +  S   ++          L LDL GG+ ++L+   
Sbjct: 9   RAPWRPLITLLVILAAGAGALFAGVTTSSEAQWTP-------KLALDLEGGTQIILQAVT 61

Query: 61  -DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            + +      +      +R  +   G+    +     +  +        E     V    
Sbjct: 62  ANNEAVSAEDISQAIAIIRQRVDSSGVAEAEITSQGGRNIVVALPGNPSEETLALVRESA 121

Query: 120 Q-GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           Q      L +     + V T     +   + +  D     A  Q            G  +
Sbjct: 122 QMQFRPVLYMGDPAPIEVETPADGETTNDTDDASDAQEPTADAQQDPAAESAEPVGGPLD 181

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
             I                  +R           +    L           V      +G
Sbjct: 182 ELISDDAEAAEAENPSDLAQITRDVVEEFYALDCTSPDSLTGGGGVADPNAVLVTCSEEG 241

Query: 239 NQYLVEDKVEISGIHLNGATANFDP-----KTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           +   +   +EISG  +  A++          T+  +V+I+F+  G R F  VT      P
Sbjct: 242 DTKYILGPMEISGNDIAQASSGLKQLQGGAMTNDWIVNIAFNSQGTRDFETVTSRLSQLP 301

Query: 294 LAVVL----------------DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
                                D  VL++P + +   +G+A I G FT E+A  LA  L  
Sbjct: 302 EYEQWIYAPTSSAPNMFAIVLDNLVLSSPGVTEVFRTGEAFIEGTFTNESANKLANQLSF 361

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           G+LP+   +  E  + A LGS+ + KG  A + GL+L+ ++ +V Y   G +   S+ + 
Sbjct: 362 GALPLTFEVQSEETISATLGSEQLQKGILAGLIGLILVGVYSLVQYRVLGTLTIASLVIA 421

Query: 398 VILTLALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
            + T   L+LL        +L  +AGI++ IG+  DS I+  ERIR+E R+ +S+  +++
Sbjct: 422 AVATYLALALLSWVQGYRLSLAGVAGIIVAIGITADSFIVYFERIRDELREGRSLDGAIE 481

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
           +G+ RA  TI  S+    IA VVL+F   G VRGFA T+GL+ LI +         ++  
Sbjct: 482 VGWDRAKRTIIASDAVNFIAAVVLYFLAVGGVRGFAFTLGLTTLIDLIVVFFFTHPVLQL 541

Query: 514 IIRYKKMKS 522
           + R +  ++
Sbjct: 542 LARTRFFRN 550



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 80/209 (38%), Gaps = 8/209 (3%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
           +  G    ++      +     +     +Q+ E +   +  E ++KGI+  +I  I + +
Sbjct: 342 FIEGTFTNESANKLANQLSFGALPLTFEVQSEETISATLGSEQLQKGILAGLIGLILVGV 401

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAVAAVLTLIGYSVNDKV 738
           Y  ++++       I +L++    T    AL     G   +L  VA ++  IG + +  +
Sbjct: 402 YSLVQYRVL-GTLTIASLVIAAVATYLALALLSWVQGYRLSLAGVAGIIVAIGITADSFI 460

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V ++R+R  ++      S    I+   +      + +    FI+ + +       +  FA
Sbjct: 461 VYFERIRDELRE---GRSLDGAIEVGWDRAKRTIIASDAVNFIAAVVLYFLAVGGVRGFA 517

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +    ++      F   P+L  +   R
Sbjct: 518 FTLGLTTLIDLIVVFFFTHPVLQLLARTR 546


>gi|206560037|ref|YP_002230801.1| multidrug efflux protein [Burkholderia cenocepacia J2315]
 gi|198036078|emb|CAR51973.1| multidrug efflux system transporter protein AmrB [Burkholderia
           cenocepacia J2315]
          Length = 1046

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 70/612 (11%), Positives = 166/612 (27%), Gaps = 41/612 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GL            + ++P   P              +       
Sbjct: 8   RPVFAWVIAIFIMLGGLFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSATSSAGAASLYLTFKQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +++L    +++ +      +   ++     D      ++         +  +   E   +
Sbjct: 114 DARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTDVQLGEYASANVVQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++     T + ++      N        G   +  S      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKMAGHGLTASDIASAVRAHNARVTIGDIGRSAVPASAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                                 F      +            
Sbjct: 233 VFADAPL-------------KTPADFGAIALRARPDGSALFLRDVARVEFGGNDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L A   P     +          S +  
Sbjct: 280 VNGKVATGMGIKLAPGSNAVSTEKRVRATMDELSAYFPPGVKYQIPYETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+    + + +  T  ++   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEGLGPYDATVKAMRQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529
              G   R FA+++ +SI  S F A+S+  A+   +++                +     
Sbjct: 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVSGDHHEKGGFFGWFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   W V    L +  ++ L          + +G   + V+  +  
Sbjct: 520 ATQRYATRVGTMLKKPVRWLVVYGALTAAAALMLTQLPTAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESL 601
            L+    ++  +
Sbjct: 580 PLAETMQSVREV 591



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 71/202 (35%), Gaps = 8/202 (3%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                   ++ +       V       T         +++   I   ++  + M +++  
Sbjct: 301 TEKRVRATMDELSAYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ- 359

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                  L     + + +  T G     G   N+  +  ++  IG  V+D +VV + +  
Sbjct: 360 --NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENV-- 415

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    +   D   K++ +  G  V  ++      +PMA +GG+V      FA+ +A 
Sbjct: 416 ERLMVEEGLGPYDATVKAMRQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAV 475

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            I  +A  ++ +   +   +  
Sbjct: 476 SIGFSAFLALSLTPALCATLLK 497



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 71/210 (33%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           I  I              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAAGHSSGEAMSAIERIAAKLPAGIGYAWSGQSFEERLSGAQAPMLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W      +  + L +   +    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRMMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ +  +    L    +S  D   ++    L   V TS+A  + VLP+A   G+  G+  
Sbjct: 938  LIVEVAKD---LVAQRMSLVDAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQM 994

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +  G++ A   ++F+     + +  
Sbjct: 995  AIGTGVLGGVITATVLAVFLVPLFFVIVGR 1024


>gi|78188010|ref|YP_378348.1| preprotein translocase subunit SecD [Chlorobium chlorochromatii
           CaD3]
 gi|78170209|gb|ABB27305.1| SecD export membrane protein [Chlorobium chlorochromatii CaD3]
          Length = 638

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 121/480 (25%), Positives = 228/480 (47%), Gaps = 16/480 (3%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
           +      L    + +R+ + + G+    +    ++ + +       +  + + +    + 
Sbjct: 159 EKESEEALSRAKEIIRNRIDQYGVAEPMITTQGSRKLVIELPGVSDEGRVRNLLKGTAKL 218

Query: 122 VNSKL--NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR----IDQIG 175
               L       + L    +      + +          A       +       +    
Sbjct: 219 EFKLLREPELLVRALDRINSGLASGTMATSLAPTVAPDSAASAQSVSVSASATPSLPAKA 278

Query: 176 ISESTIQRLGSHR-----ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
               T     + R     I++   G        +                      +   
Sbjct: 279 NVAPTSAVAPAPRSLSNLIVLMQNGMAYTEERNRAEVKALLERADVQALLPPDSELLLAA 338

Query: 231 RFLRDSDGNQ----YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
           +   D++G +    YL++   E++G  +  A A F  +  +P V ++ +  G  R+  +T
Sbjct: 339 KPEVDAEGKKFYPLYLIKKTPELTGGVITEAKATFGSQGIQPEVTMAMNTEGTSRWARIT 398

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
             NIGK +A+VLDG V +APV+   IP+G + I+G  ++E A  L  +L+AG+LP  + I
Sbjct: 399 GANIGKRIAIVLDGAVYSAPVVQSKIPNGNSVINGIESLEEAKDLEIVLKAGALPAPVRI 458

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER+VG  LG+D I  G  ++V   V +  FM+V Y + G+ A+ ++ LN+++ L++L+
Sbjct: 459 TEERSVGPSLGADYIRAGMLSLVWAFVAVSFFMLVYYRQAGIAANIALILNILIVLSVLA 518

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
              A+L+LP IAGIVL IG+AVD+N+L+ ER+REE  + +S+  ++  G+ RA+S+I DS
Sbjct: 519 GFNASLSLPGIAGIVLTIGMAVDANVLIYERVREELAEGKSIAAAVAQGYDRAFSSILDS 578

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           ++T L A  +L+ +G G ++GFA+T+ +    S+FTAI + R +  F++  +K+ +    
Sbjct: 579 HVTTLAAGFLLYTYGIGPIQGFAVTLMIGTAASLFTAIVVTREIFNFMLFKEKLSTKSFG 638



 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 84/205 (40%), Gaps = 4/205 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  K   +     I     VGP +  + IR G++ ++ + +A+  ++ + 
Sbjct: 435 ESLEEAKDLEIVLKAGALPAPVRITEERSVGPSLGADYIRAGMLSLVWAFVAVSFFMLVY 494

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++    + A   LIL+I   L   A F    +L  +A ++  IG +V+  V++Y+R+R+ 
Sbjct: 495 YR-QAGIAANIALILNILIVLSVLAGFNASLSLPGIAGIVLTIGMAVDANVLIYERVREE 553

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       S    + +  +      + + +    +   +  +G   I  FA+ +  G   
Sbjct: 554 LAE---GKSIAAAVAQGYDRAFSSILDSHVTTLAAGFLLYTYGIGPIQGFAVTLMIGTAA 610

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++I +   I  F+      + +
Sbjct: 611 SLFTAIVVTREIFNFMLFKEKLSTK 635



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 81/185 (43%), Gaps = 29/185 (15%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL---QMYSDELRSFLKKEGIGVFSMRQIQ 95
           + +  + LGLDL+GG HLV+EVD+ D               +   ++ + +     R   
Sbjct: 68  VRQKSLKLGLDLKGGMHLVMEVDQVDLFEQKAWNKDATFTAIMQSVRAQALAQSDARV-- 125

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
                              + L +Q  N +     +    +  ++KEI   L     ++ 
Sbjct: 126 -------------------IDLLVQEFNKRNIRLSRYFYDIRNSDKEIIGKL-----EKE 161

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
              A+ ++ EIIR RIDQ G++E  I   GS +++I+LPG  D  R+R LL  TAK+ F 
Sbjct: 162 SEEALSRAKEIIRNRIDQYGVAEPMITTQGSRKLVIELPGVSDEGRVRNLLKGTAKLEFK 221

Query: 216 KVLPN 220
            +   
Sbjct: 222 LLREP 226


>gi|240140077|ref|YP_002964554.1| multidrug efflux system protein (acrB ou acrF) [Methylobacterium
           extorquens AM1]
 gi|240010051|gb|ACS41277.1| multidrug efflux system protein (acrB ou acrF) [Methylobacterium
           extorquens AM1]
          Length = 1054

 Score =  166 bits (418), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/602 (14%), Positives = 171/602 (28%), Gaps = 43/602 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P   P               + L    
Sbjct: 8   RPVFAWVVALFILLGGALSI-----PQLPIAQYPIIAPPA-------------IALSTSY 49

Query: 63  DDF-VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
               V       +  +   L      +       +    +IT SF           +V  
Sbjct: 50  PGASVENLYTGTTRLIEDELNGAANILSFESASDSFGVVEITASFQPGTDPGYAGVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  ++       ++ +         +  +     +IR  I++I   
Sbjct: 110 RLKRVEARLPAEVRQQGILVEEASAATLNIITLVSTDGKTDEVGLGDFLIRNVINEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +LR L    A ++      N        G +   +  
Sbjct: 170 PGVGRATLY-STERALRIWIDPDKLRGLSLNAADVTKAIGRQNVQIASGAVGAQPSPERH 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              +     + + G            +       +                 I       
Sbjct: 229 AVNF----PIIVKGQ---------MTEPEAFGAIVLRANPDGSNVRLRDVARIELGGDDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +   T +        L           +      A   
Sbjct: 276 KFTTRLNGGPAAGISVTLAPDGNAIETAKAIRAKMVELSQFFPDTVKWDIPYDITPAVDA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   ++ L+    + + +  T  ++ L G ++ + ++
Sbjct: 336 SIEKVLHTLVEAVVLVFIVMFVFLQNIRYTLIPTIVVPIALFGTCTVMLLAGFSVNVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    N +      +     S+    I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMNEEGLPPKEATRKAMSQITGAIIGITLVLIAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
           + FF G      R F+I M  SI  S   A+S+  A+   +     K            F
Sbjct: 456 MAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPALCATMLKPIEKGHGHAKGGVFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
               D    ++ R   W +  S    +  + L+      +    +G + L       VD+
Sbjct: 516 NRFVDRETARYGRGVAWFIRKSGRVMLIYLVLVAGVAYAFMRLPEGFLPLEDQGFFTVDI 575

Query: 592 SV 593
             
Sbjct: 576 QT 577



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 88/237 (37%), Gaps = 6/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V            + +   G    +       G+++   + +     ++++  
Sbjct: 258 SNVRLRDVARIELGGDDYKFTTRLNGGPAAGISVTLAPDGNAIETAKAIRAKMVELSQFF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P +   +            I K +  ++ + + + I +++  +   + L     + + + 
Sbjct: 318 PDTVKWDIPYDITPAVDASIEKVLHTLVEAVVLVFIVMFVFLQNIRYTLIPTIVVPIALF 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N+  +  ++  IG  V+D +VV + +     +    +  ++   K++
Sbjct: 378 GTCTVMLLAGFSVNVLTMFGMVLAIGILVDDAIVVVENV--ERIMNEEGLPPKEATRKAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++  G  +  ++      +PMA + GSV      F+I M   I  +A  ++ +   +
Sbjct: 436 SQITGAIIGITLVLIAVFIPMAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPAL 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 75/232 (32%), Gaps = 9/232 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              V   +   + +         +G      F+G ++  +     PG +   T        
Sbjct: 784  YSVKNAQGTMVPMSSFADLKWGVGPAQIIGFNGYQSVRITGDPAPGYTSGDTIKEMERLM 843

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                           +   +   +      + V+I  + +     +   W   +  +  +
Sbjct: 844  TFLPKGFGYAWTGQSLQEKEAGSQASLLLALSVLIVFLCLA---ALYESWSIPISVLLVI 900

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L +  ++    L G+  ++     ++T+IG S  + +++ +  R   K      +    
Sbjct: 901  PLGVIGSVAAVYLRGMPNDVYFKIGLITIIGLSAKNAILIVEFARDLWK---PGTNIVQA 957

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAA 809
              ++        V TS+A    V+P+A+  G+   S       +  G++ A 
Sbjct: 958  TIQAATLRFRPIVMTSLAFIFGVVPLAIATGASSKSQQAIGTGVMGGMISAT 1009


>gi|114568818|ref|YP_755498.1| acriflavin resistance protein [Maricaulis maris MCS10]
 gi|114339280|gb|ABI64560.1| acriflavin resistance protein [Maricaulis maris MCS10]
          Length = 1040

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 76/516 (14%), Positives = 163/516 (31%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +  ++I   G+L      L    L   P       +S+  D  G         
Sbjct: 9   RRPVLAFVFCALIVVFGVL-----GLRDLPLRELPDVDRP-VVSVSADYPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S +        S R   +++T++F+  R  E  A+ V   +  
Sbjct: 55  NAEVVENRVTQIIEDQLSGIDGVETITSSSRDSSSRVTITFSLDRDIEAAANDVRDSVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D ++  +          V      D++ S   E S    R  +++  + +   
Sbjct: 115 VIDRLPQDVEQVEVRKQDSDARPFVWYNLLSDRMTSE--ELSDYAERALLERFSVIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +    DP  +     T A +                          N  
Sbjct: 173 QVRIGGQRRYSMRIWLDPQAMAARGVTVADIDGALRSQ-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +    VE     +                                  ++           
Sbjct: 214 VPGGSVETPDTQIVVRVERLFADPDAFARLPISRTGEGHVIRLAEVADVELAAEEPRTLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       ++Q +     ++ G  A  +R         I    +      S   
Sbjct: 274 RGNGQNMIGLGFVRQSQANSVEVADSIGNEAERVRLTLPEGMELISASDDTVFIEESIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI A LV++V+++ +   +  ++    + + +I   A+L++ G ++ + ++  +V
Sbjct: 334 VWRTLAIAATLVVLVIYLFLGSLRAAIIPAAVVPVCLIGVFAILAVAGFSVNILTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD +I+V E I+      +    +   G  + +  +  +    +   V L F  
Sbjct: 394 LAIGLVVDDSIVVLENIQRRVDMGEPPALASLRGGRQVFFAVVATTAVLVAVFVPLVFLP 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G      A+T+  ++++S F A+++   M   +
Sbjct: 454 GFIGRIFTELALTIAGAVVLSSFVALTLSPMMASKL 489



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + +  + + ++IY+        A+     + + +       A+ G   N+  + A++  I
Sbjct: 338 LAIAATLVVLVIYL-FLGSLRAAIIPAAVVPVCLIGVFAILAVAGFSVNILTLLALVLAI 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +VV + +    +             +   +     V T+       +P+    
Sbjct: 397 GLVVDDSIVVLENI---QRRVDMGEPPALASLRGGRQVFFAVVATTAVLVAVFVPLVFLP 453

Query: 791 GSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G +   F   A+ +A  +V+++  ++   +P++       ++ A+
Sbjct: 454 GFIGRIFTELALTIAGAVVLSSFVAL-TLSPMMASKLLRPSREAK 497



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/200 (12%), Positives = 65/200 (32%), Gaps = 9/200 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
                   +      +  T + G K         +    ++ + + + +  +F+       
Sbjct: 822  AWLDDWAQRDLPPEMSTTYLGGAKEFLNANSAVLFAFGMALLIVFLVLAAQFESLIQ-PL 880

Query: 697  ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    G F L   G   N+ +   ++ LIG +  + +++ +      +L  T 
Sbjct: 881  VIMLTVPLAVAGGLFGLEMVGSSLNIYSQIGLVILIGLAAKNGILIVEFAN---QLRETG 937

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
               R     +        + T ++  I   P+ +    G     +  + +  G+ VA   
Sbjct: 938  RGLRTATLDAAETRFRPILMTGISTAIGAFPLVIGTGPGAESRITIGVVIFAGVTVATLF 997

Query: 812  SIFIAAPILLFIYDWRAKNA 831
            ++F+       +  +     
Sbjct: 998  TLFVVPVAYGVLGRFTKTPN 1017


>gi|87198065|ref|YP_495322.1| acriflavin resistance protein [Novosphingobium aromaticivorans DSM
           12444]
 gi|87133746|gb|ABD24488.1| acriflavin resistance protein [Novosphingobium aromaticivorans DSM
           12444]
          Length = 1060

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/674 (11%), Positives = 188/674 (27%), Gaps = 42/674 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+  +   GL+  +     Q  +   P       I           +     
Sbjct: 12  RNPVVPIVLFLGLTLAGLVSFM-----QMKVQDNPDIEFPMVI---------VSIAQPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +  +  ++  + F   +      ++V   +  
Sbjct: 58  APTEIENQITQRVESAVRSIAGVDTLTSTASEGNSQTMVQFKIGQDINAAVNEVKNQVDQ 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L     +  +         I       D +     + S  I      ++       
Sbjct: 118 IRSDLPEGILEPQVFKVETSSNPIAYFAVAADDMTIE--QLSWFIDDTIAKRLLTVPGMA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S  +  ++    DP R+  L  T ++++      N +  G    V   R S     
Sbjct: 176 EVSRSGGVNREIAVTIDPMRMNALGVTASQVNAALRQVNINAAGGKTEVAGSRQSVRVLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D   +S   +                       G R        ++    + +    
Sbjct: 236 NARDAYALSQTEIAL--------------------SGNRTVRLKDVADVRDSYSELTSIA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S     S     + A      +           +   +V         
Sbjct: 276 KFNGKAVVTFSMSRARGESDVSVYDGALEEMRKIEKEQGGKVHFELLFTSVSYTKDQYRS 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+F  +   +  +V+  +I L+ I T  +L L+G TL   S+  + 
Sbjct: 336 SMNAMVEGAVLAVIVVFFFLRDWRATIVSAIAIPLSSIPTFWVLDLMGFTLNQMSLLALG 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +  +  + +     +    
Sbjct: 396 LVAGVLVDDAIVEIENIVRHMRMGKSAYQAAIDAADEIGLAVVATTFSIVAVFFPVALMP 455

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +S+L S+  A  I   +  + ++          P    ++     
Sbjct: 456 GVSGQFFKNFGLTVVISVLFSLLVARMITPMIAAYFLKAHGEAEHGGGPWMDRYMKVLGW 515

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL---GVLANRPVDLSVVR 595
           ++   +A  +            +       +  G        +    +      D     
Sbjct: 516 SLDTAKAAAYRAAHPGRRFRARLRDHRLWMMGIGFGALLLTLVMFAVIPTQFFPDTDSDS 575

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S +    +   + Q  + +   +V L  +  +  +    +   K  I   +     +++ 
Sbjct: 576 STVSIEMVPGTTLQQTEKKVQEIVTLLSKEQEVKSTLASVREAKANIYVNLKADRERSSL 635

Query: 656 IVGPKISRELIRKG 669
               +++  L +  
Sbjct: 636 EFERQMTPRLQQIA 649



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 74/247 (29%), Gaps = 11/247 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V      D+    S L S+   +             +       D       LE ++K 
Sbjct: 255 TVRLKDVADVRDSYSELTSIAKFNGKAVVTFS-----MSRARGESDVSVYDGALEEMRKI 309

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             E       +           +        V  + +A+++  +    W   + +   + 
Sbjct: 310 EKEQGGKVHFELLFTSVSYTKDQYRSSMNAMVEGAVLAVIVVFFFLRDWRATIVSAIAIP 369

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L    T     L G   N  ++ A+  + G  V+D +V  + +   ++      S     
Sbjct: 370 LSSIPTFWVLDLMGFTLNQMSLLALGLVAGVLVDDAIVEIENI---VRHMRMGKSAYQAA 426

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
             + +E     V T+ +      P+A+  G       +F + +   ++ +   +  I   
Sbjct: 427 IDAADEIGLAVVATTFSIVAVFFPVALMPGVSGQFFKNFGLTVVISVLFSLLVARMITPM 486

Query: 819 ILLFIYD 825
           I  +   
Sbjct: 487 IAAYFLK 493



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 4/108 (3%)

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             ++   L  + +L L     L    L G   +L     +L L G    + +++ D   +
Sbjct: 884 YHRFISPLVNMGSLFLAPLGGLIAIWLLGQSLSLPVFIGILMLFGIVAKNSILLIDFALE 943

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSV 793
            M      +   + + ++ ++     V T++A    ++P AV  GG  
Sbjct: 944 EMAAGKGKL---EAVMEAGHKRAQPIVMTTVAMVAGMVPTAVAIGGDS 988


>gi|72382123|ref|YP_291478.1| preprotein translocase subunit SecF [Prochlorococcus marinus str.
           NATL2A]
 gi|72001973|gb|AAZ57775.1| protein translocase subunit secF [Prochlorococcus marinus str.
           NATL2A]
          Length = 321

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 119/250 (47%), Gaps = 7/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +  N        +S   +        Q    + + L+ ++     +     V+  V K 
Sbjct: 73  EISNNIIALKKQDKSFSSNTSPNLSRSQIQLLDNSQLISIRLPFLSANQSESVVAEVNKS 132

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                      + EI+GP + R+L++  ++ +  + + + +YI  R+   ++  A+  L+
Sbjct: 133 FGPFNNE--NTSVEIIGPSLGRQLLKSSLISLFFAFLGIALYINFRYDRRYSFLALLALL 190

Query: 702 LDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            DI    G FA  G     E +     ++LT+ GYSVN+ VVV+DR+R+   L    +S+
Sbjct: 191 HDILIVCGVFAWLGYFFNVEVDSLFAVSLLTIAGYSVNNTVVVFDRIREK-SLIENQLSY 249

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  IDK++  TL R++YTS+   + ++ + +WGGS +  FA  +  G+++ + SSI +A 
Sbjct: 250 KYQIDKAVGATLTRTIYTSLTTLLPLICILIWGGSTLYWFAFALLIGVIIGSWSSIALAP 309

Query: 818 PILLFIYDWR 827
            +L      +
Sbjct: 310 SLLSITSTKK 319



 Score = 38.1 bits (86), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 43/108 (39%), Gaps = 10/108 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  ++ ++   +C I ++  L      S+            ++LGLD  GG+ + LE  
Sbjct: 11  KNRKYVWLISFSLCLISIIGMLICLKSTSI---------NAPLNLGLDYTGGTQITLERS 61

Query: 62  -EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFK 108
             D+ ++      S+ + +  K++     +     ++  +   D+   
Sbjct: 62  CTDECISLNTSEISNNIIALKKQDKSFSSNTSPNLSRSQIQLLDNSQL 109


>gi|225163456|ref|ZP_03725771.1| acriflavin resistance protein [Opitutaceae bacterium TAV2]
 gi|224801917|gb|EEG20198.1| acriflavin resistance protein [Opitutaceae bacterium TAV2]
          Length = 1057

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/521 (12%), Positives = 147/521 (28%), Gaps = 38/521 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I  IG++       P   +   P                     L   
Sbjct: 15  KRPVATALLTIGIFLIGIVA-----FPLLPVAPLPQVEFPTIQ---------VSASLPGA 60

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       IT+ F      +  A +V   +  
Sbjct: 61  SPETMASSVATPLENQLALIPGITQLSSTSSLGGVSITIQFDLDIDIDAAAQEVQSAINA 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              S ++   ++   +    + S         Q+       
Sbjct: 121 AGGQLPTELPSPPTYRKVNPSDSPIML-LSVVSEVLPLTQVSDYAANVVAQQLSQLRGVA 179

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  + DP +L  L  +   +         +             +     
Sbjct: 180 QVDIMGEQKPAVRVQVDPVKLASLGLSLDDVRGVIASATINTPKGSIDGPRQSFAIYAND 239

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D                      P  D+                +       +    
Sbjct: 240 QLLDAA--------------------PYNDLILAYRNGAPVRVRDVGHAVAGPENLRSAA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++        I   +A  +   T++    L   L+A   P     V    +     S   
Sbjct: 280 LVNNQRGVGIIIRKQADANVIETVQRIRDLIPELQAAMPPAITIDVLSDRMRTIRASVQE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   LV  V+F+ +   +  L++   + ++++ T A++  LG +L   S+  + 
Sbjct: 340 VEFHLVLTMALVTGVVFIFLRNIRATLISSAVVPISIVATFAIMHALGFSLNNLSLMALT 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  +D  I++ E I            +   G      TI   +I+ +   + +   G
Sbjct: 400 ISVGFVIDDAIVMLENIYRHIEDGMPPMQAALKGAGEIGFTILSISISLVAVFIPVLLMG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
              G   R FA+T+  ++L+S F +++ V  M    +R   
Sbjct: 460 GIVGRLFREFAVTVTATVLVSGFVSLTFVPMMCSRFLRQHH 500



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 76/231 (32%), Gaps = 10/231 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR    ++   +             V +  +          ++ ++  I E+        
Sbjct: 262 VRDVGHAVAGPENLRSAALVNNQRGVGIIIRKQADANVIETVQRIRDLIPELQAAMPPAI 321

Query: 654 TEIVGPKISRELIRKGIVG---VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
           T  V     R +          ++++   +   ++I  +     L +   + + I  T  
Sbjct: 322 TIDVLSDRMRTIRASVQEVEFHLVLTMALVTGVVFIFLRNIRATLISSAVVPISIVATFA 381

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                G   N  ++ A+   +G+ ++D +V+ + +    +     +       K   E  
Sbjct: 382 IMHALGFSLNNLSLMALTISVGFVIDDAIVMLENI---YRHIEDGMPPMQAALKGAGEIG 438

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
              +  S++     +P+ + GG V      FA+ +   ++V+   S+    
Sbjct: 439 FTILSISISLVAVFIPVLLMGGIVGRLFREFAVTVTATVLVSGFVSLTFVP 489


>gi|27376108|ref|NP_767637.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
 gi|27349247|dbj|BAC46262.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
          Length = 1054

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/692 (11%), Positives = 193/692 (27%), Gaps = 42/692 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               ++L  ++  +G L           +  +P  +P   +                   
Sbjct: 11  PILAMVLSIVLLIVGALA-----YTTLPVSEYPQVVPPTVVVT---------TQYPGASA 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGV 122
             V+  +    ++  + ++                IT++F      +     V   +   
Sbjct: 57  QTVSDTVAAPIEQQINGVEDMLYLYSQATSNGQLTITVTFKLGTDLDKAQVLVQNRVAIA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  + ++N +VT       +++            +  S   + Q  DQ+   +    
Sbjct: 117 QPQLPDEVQRNGVVTRKNSPDILMVVFMLSPDDSFDQLYISNYALLQVRDQLLRIDGVGD 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP R+  L  T+ ++       N    G       + D      L
Sbjct: 177 IQIFGARDYSMRLWLDPDRIANLGLTSTEVLAAIRAQNVQIAGGQIAEPPIADRAFQPNL 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                   +    +       R         I            
Sbjct: 237 TFTG--------------RLKDQKQFEDILIKAGSDGRTVRLRDVARIELGALAYSTNSF 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L        + + +   +   T +        L+          +          S    
Sbjct: 283 LLRKSAVAMLVTQRPGSNALATAKHISDTMTKLKESFPKGLDYNIGYNPTEFIAQSVHEL 342

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV+IV+ + +   +  ++   +I ++++ T A+++ LG ++   ++ G+VL
Sbjct: 343 IKTIYEAMLLVVIVVLVFLQGWRPAIIPIIAIPVSLVGTFAVMAALGFSINNLTLFGLVL 402

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFF 479
            +G+ VD  I+V E +        S   +          A  +I        + T  L  
Sbjct: 403 AVGIVVDDAIVVVENVERHLEHGLSRRDAALKTMEEVGGALVSIALVLCAVFVPTAFLGG 462

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   + FA+T+ ++  IS F ++++  A+   I+   + K    +             
Sbjct: 463 ISGQFFQQFAVTIAVATAISCFCSLTLSPALASQILTPHEEKRPPASWNVVARGWNAFTG 522

Query: 540 IQFMRARFWGVGI----------SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           +          G           S++  +  + L+ + G   G   +G I         +
Sbjct: 523 VFNRTFDRLAHGYAGLANFVIRHSVVMLLIYVVLIGSAGWLIGTTSQGFIPAQDRGYVII 582

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + +  +   +     +            +            TR        +  +    
Sbjct: 583 SVQLPGAASLARTTEIVREIERISLDTPGIIRVAAFAGFSGATRTQAGNAAALFPVFDEP 642

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
            ++  + +        +RK +  +  + I ++
Sbjct: 643 EVRLKKGLTANAITAELRKRLAAIQGAFIIVI 674



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/208 (12%), Positives = 69/208 (33%), Gaps = 10/208 (4%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWI 686
              A           I ++   +           +S + +  G  G+++  I +  +Y+ +
Sbjct: 839  EPAPGTSSTTALNAIKKLADDTLPSGFTFEWTDLSYQQVTGGNAGLLVFPICVLFVYLVL 898

Query: 687  ---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
                  W      I  + + +        + G + N+      + L+G +  + +++ + 
Sbjct: 899  AAQYGSWTLPFAVILIVPMCLLAATIGVRIMGQDVNILTQIGFVVLVGLAAKNAILIVEF 958

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
             R    +        + +  +    L   + TS A  + VLP+ V    G  +  +  + 
Sbjct: 959  ARD---IENEGKPRLEAVIDACRLRLRPILMTSFAFILGVLPLVVSTGSGSEMRQAVGVA 1015

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + FG++      +       + + +   
Sbjct: 1016 VFFGMLGVTLFGLLFTPIFYVVVRNLAE 1043


>gi|91789283|ref|YP_550235.1| hydrophobe/amphiphile efflux-1 HAE1 protein [Polaromonas sp. JS666]
 gi|91698508|gb|ABE45337.1| Hydrophobe/amphiphile efflux-1 HAE1 [Polaromonas sp. JS666]
          Length = 1065

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 47/448 (10%), Positives = 118/448 (26%), Gaps = 11/448 (2%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116
                   +   +    +E  + +                 + ++F      +     V 
Sbjct: 36  YPGANPKVIAETVATPLEEAINGVDGMLYMSSQATTDGLMTLNVTFKLGTDPDKAQQLVQ 95

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  + ++  + T        ++                   +    D++  
Sbjct: 96  NRVSQAEPRLPEEVRRLGITTIKSSPDLTMVVHLLSPSGRYDMTYLRNYGVLNVKDRLAR 155

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q          +    DP ++ +   +   +       N      + G       
Sbjct: 156 INGVGQVQLFGSGDYSMRVWLDPQKVAERGLSAGDVVRAIREQNIQAAAGVVGASPGLPG 215

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +  +  +              +    +V     E G           +    + 
Sbjct: 216 VDMQLSINAQGRLQSEE----------EFGDIIVKTEKAEKGGAVTRLRDIARLELGASD 265

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L                +     +    +   L+          +         
Sbjct: 266 YALRSLLDNKQAVAVPVFAAPGSNAIQISDDVQAVMKDLKKNMPEGVDYEIVYDTTQFVR 325

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+ + +   +  ++   ++ ++VI T A++ L G ++   S
Sbjct: 326 SSIEAVVHTLLEAVALVVLVVIIFLQTWRASIIPLLAVPISVIGTFAVMHLFGFSINALS 385

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +        S   +           I    +  +   V 
Sbjct: 386 LFGLVLAIGIVVDDAIVVVENVERNIEAGLSPRDATYRAMREVSGPIIAIALVLIAVFVP 445

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAI 504
           L F  G + + +        + ++ +AI
Sbjct: 446 LAFITGLSGQFYKQFALTIAISTVISAI 473



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 +  +  + + +   +    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 890  SLTLPIAIVLIVPMGLLAAMLGVKLTGGDNNIFTQIGLIVLVGLSAKNAILIVEFARE-- 947

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + VLP+ +    G  +  +  + +  G+
Sbjct: 948  -LEFAGRTPLQAAIEASRLRLRPILMTSLAFIMGVLPLVLSTGAGAEMRHAMGVAVFSGM 1006

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +   +  +F+     + +  
Sbjct: 1007 IGVTAFGLFLTPVFYVTLRR 1026



 Score = 45.5 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 58/135 (42%), Gaps = 12/135 (8%)

Query: 684 IWIRFKWYFALGAITTLILDIT---KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           I     W  ++  +  + + +           LFG   N  ++  ++  IG  V+D +VV
Sbjct: 347 IIFLQTWRASIIPLLAVPISVIGTFAV---MHLFGFSINALSLFGLVLAIGIVVDDAIVV 403

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
            + + +N++     +S RD   +++ E  G  +  ++      +P+A      G     F
Sbjct: 404 VENVERNIEA---GLSPRDATYRAMREVSGPIIAIALVLIAVFVPLAFITGLSGQFYKQF 460

Query: 798 AIPMAFGIVVAASSS 812
           A+ +A   V++A +S
Sbjct: 461 ALTIAISTVISAINS 475


>gi|16127427|ref|NP_421991.1| AcrB/AcrD/AcrF family protein [Caulobacter crescentus CB15]
 gi|221236236|ref|YP_002518673.1| cation/multidrug efflux pump AcrB [Caulobacter crescentus NA1000]
 gi|13424873|gb|AAK25159.1| AcrB/AcrD/AcrF family protein [Caulobacter crescentus CB15]
 gi|220965409|gb|ACL96765.1| cation/multidrug efflux pump acrB [Caulobacter crescentus NA1000]
          Length = 1041

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/685 (10%), Positives = 196/685 (28%), Gaps = 57/685 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   + +++  +   G+            + +FP+                  +     
Sbjct: 23  RNPIPVAVVFIALMIAGV-----GAYLGLPIKQFPNVEFPAVT---------VTVTQSGA 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        S+ Q  +  T+ F      + + D+V   +  
Sbjct: 69  APGEMETQVTRPIEDAVASISNVKTIRSSVVQGASTTTIEFNLGEDLQKVTDEVRSKVDQ 128

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +  + L+         I+    +       A + S  I       +   +   
Sbjct: 129 ARAVLPREVDEPLVQRLEITSAPIITYAVSAPG--MSATDLSWFIDDTVTRALQGEKGVA 186

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP R+     T  +++      +    G    +           
Sbjct: 187 QVARVGGVDREINVIIDPDRMASFGVTAPQLNQALASFSVDAPGGRASI----------- 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G             T + +  I+    G R         +G+         
Sbjct: 236 ---------GGREQTLRVLGAATTIEQLRQITIPVAGGRYVKLTDVAQVGQGSEEERGFA 286

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           S     +        L   +  +         V     S   
Sbjct: 287 RLDGKPVVAFQVMKTRDSSDVAVEDRVKAAVDKLAEKTPGVTFVK-IFSTVDETRASFKA 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      L  +V+F+ +   +  L+   ++ ++++ T A ++ +G +L + ++  + 
Sbjct: 346 TEHTLLEGMLLASLVVFLFLREWRATLITALAMPVSLVPTFAFMAFMGFSLNVVTLLALT 405

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  ++  E I +   + Q  F +   G       +  +  T +   V + F  
Sbjct: 406 LVIGILVDDAVVEIENIEKRVARGQRPFQAAMEGADAIGLAVVATTFTIVAVFVPVSFMP 465

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRY---KKMKSIDINPLSRFFLIP 535
           G      + F +T+ +++L S+  A  +   +  + ++       +              
Sbjct: 466 GMPGQFFKEFGLTVAVAVLFSLVVARLLTPLLAAYFLKPAKAPHPRKPFEGFYRNILDWS 525

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI--------------DFKGGIQL 581
               I            SI+ +            N                   +   Q+
Sbjct: 526 LDHRILACIIGGLIFVGSIMLAGLLPTAFQPPANNNYYYLKVQGPPGATVADMDRTVQQV 585

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             L  +  +++ V + + S        Q+    ++  + +  +    ++ T + + V+  
Sbjct: 586 TTLMRKRPEVTNVFAQVGSNIGSGWGGQSSADIRDATITIVLRGDRELSVTEIKQEVRAS 645

Query: 642 ITEIVPLSTIQNTEIVGPKISRELI 666
           + +I         +    ++   L+
Sbjct: 646 LRDIPDARVNLQGDWGSSEVQTILV 670



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 81/258 (31%), Gaps = 10/258 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            I + V   R V L+ V    +  +      +           ++ +    VA    ++ 
Sbjct: 256 QITIPVAGGRYVKLTDVAQVGQGSEEERGFARLDGKPVVAFQVMKTRDSSDVAVEDRVKA 315

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K+ E  P  T         +            +    +A L+      +W   L   
Sbjct: 316 AVDKLAEKTPGVTFVKIFSTVDETRASFKATEHTLLEGMLLASLVVFLFLREWRATLITA 375

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + + +  T  F A  G   N+  + A+  +IG  V+D VV  + +    K        
Sbjct: 376 LAMPVSLVPTFAFMAFMGFSLNVVTLLALTLVIGILVDDAVVEIENI---EKRVARGQRP 432

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF 814
                +  +      V T+       +P++      G     F + +A  ++     S+ 
Sbjct: 433 FQAAMEGADAIGLAVVATTFTIVAVFVPVSFMPGMPGQFFKEFGLTVAVAVLF----SLV 488

Query: 815 IAAPILLFIYDWRAKNAR 832
           +A  +   +  +  K A+
Sbjct: 489 VARLLTPLLAAYFLKPAK 506



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 76/218 (34%), Gaps = 5/218 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +  L       +     +   + ++    +       +  V    T     + +    
Sbjct: 786 DTVAELSFQAGPAKIDRFGRKRQMTVEADLNNGAQLGEAMADVDNLPTMKNLPAGVAPAS 845

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALF 714
               +   EL     V ++ +   +   + + F+ +F  +  ++ L L I        + 
Sbjct: 846 AGDQEAFVELFTGFAVALLSAVGLVFGVLVLLFRSFFKPITILSALPLAIGGAFFGLLVM 905

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++ ++   L L+G +  + +++ +   +  +     +S R+ I  + +E     V 
Sbjct: 906 GQSLSMPSLIGFLMLMGLAAKNSILLVEYAIEQERA---GMSQREAILDACHERARPIVM 962

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
           T++A    +LP    G      F  PMA  ++    +S
Sbjct: 963 TTLAMMAGMLP-TALGIGTGAEFRQPMAVAVIGGLITS 999


>gi|90423377|ref|YP_531747.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
 gi|90105391|gb|ABD87428.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
          Length = 1046

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/689 (12%), Positives = 183/689 (26%), Gaps = 49/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GLL      L    + ++P   P             + + +    
Sbjct: 8   RPIFAWVIAITIMLGGLLA-----LRSLPVAQYPQIAP-------------TTVRITGSY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S    Q++ITL+F  +   +    +V  
Sbjct: 50  PGADAQTVENSVTKVIEQGMTGIDNLDYMTSTSTSTGQSQITLTFTSAANPDVAQMQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ V + L    +   L  T      +++           +I+ +  +     D +   
Sbjct: 110 KLQLVTALLPQIVQSTGLSVTKSSTGFLMVIGFVSTDGKLSSIDLADYVNSTLNDTLKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +L +     + +       N        G    R   
Sbjct: 170 GGVGDTQLFGSG-YAMRIWLNPDKLAKYALMPSDVEAAIQAQNTQVSAGQLGGLPARAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I                 +       
Sbjct: 229 QLNATVTARSRL-------------QTAEQFRNIILKSATDGSLVRLNDVAEVELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +     +   T E      A L          +           
Sbjct: 276 TTSAAYNGMPAAGLAVNLATGANAISTAEAVQSTIARLSTTFPQGVTVVYPYDTTPFVRL 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++   ++ + ++ T+ +LS+ G ++   ++
Sbjct: 336 SIEEVVKTLIEAIVLVFVVMFVFLQNIRATIIPTIAVPVVLLGTIGILSIFGYSINTLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +  S   +           +           V 
Sbjct: 396 FAMVLAIGLLVDDAIVVVENVERVMQEEGLSPKQATRKSMDEITGALIGIATVLSAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FFGG      R F+IT+  ++++S+  A+ +  A+   I+R  +  +        F  
Sbjct: 456 MAFFGGSVGVIYRQFSITIVSAMVLSVIVALILTPALCATILRTPEAHATGTGLFGWFNR 515

Query: 534 IPDCIAIQFMRARFWGVGISILF--------SICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             D  A  + R     +  S+ F            +  L         + +G +   V  
Sbjct: 516 TFDRGASAYRRGAQGIIARSLRFGLVFVALTVAMGVMFLRLPNSFLPQEDQGILITSVQL 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                       LE ++    + +    +  F        G           +K      
Sbjct: 576 PVGATQDRTLRVLEQVRDYYATQEKDAVDSVFTTAGFGFSGQGQNIGIAFIRLKPFAQRK 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               + Q       +   +     I  + 
Sbjct: 636 AAAVSAQAVAGRAMRAFSKFKDGRIFALA 664



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/226 (13%), Positives = 73/226 (32%), Gaps = 9/226 (3%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            + ++G     ++ +   G S                                 S +    
Sbjct: 813  ERYNGSSAVEIQGEAAAGISSGTAMDEIDTLVSQLPAGYGHEWTGLSAQERLSSNQAASL 872

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + V++  + +     +   W   LG +  + + I   L    +FG   ++     +LT
Sbjct: 873  YAISVVVVFLCLA---ALYESWAIPLGVMLAVPIGIFGALLAALVFGQTNDVYFKVGLLT 929

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             IG +  + +++ +   +      + +   +    +  + L   + TS A  + V P+A+
Sbjct: 930  TIGLAAKNAILIIEFALE---RQASGLPLVEATLDAARQRLRPILMTSFAFILGVTPLAI 986

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                G     S  I +  G++ A    IF    + + +       A
Sbjct: 987  ASGAGSGAQNSIGIGVMGGMIAATVLGIFFVPLLFVTVRRLFKGKA 1032



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 59/133 (44%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +     + + +  T+G  ++FG   N   + A++  IG  V+D +VV + +     
Sbjct: 362 IRATIIPTIAVPVVLLGTIGILSIFGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERV 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S +    KS++E  G  +  +       +PMA +GGSV      F+I +   +V
Sbjct: 420 MQEEGLSPKQATRKSMDEITGALIGIATVLSAVFVPMAFFGGSVGVIYRQFSITIVSAMV 479

Query: 807 VAASSSIFIAAPI 819
           ++   ++ +   +
Sbjct: 480 LSVIVALILTPAL 492


>gi|302533401|ref|ZP_07285743.1| protein-export membrane protein SecD [Streptomyces sp. C]
 gi|302442296|gb|EFL14112.1| protein-export membrane protein SecD [Streptomyces sp. C]
          Length = 569

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 114/523 (21%), Positives = 213/523 (40%), Gaps = 48/523 (9%)

Query: 45  SLGLDLRGGSHLVLEVD-----EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKI 98
            LG+DL GG+ + L+        D      +      +   +   G+    ++    + I
Sbjct: 10  RLGIDLAGGTSITLKAKSEPGKPDAVNETNMNTAVGIIERRVNGLGVSEAEVQTQGRDHI 69

Query: 99  TLSFADSRFKENIADKVTLFLQG------VNSKLNVDPKKN-----------------LL 135
            ++      ++   ++V    Q         +       +                    
Sbjct: 70  IVNIPKGTNEQQAREQVGTTAQLYFRPVLAFADGAPAAPEPKPSTSASSSPSPSASGSGA 129

Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES-----TIQRLGSHRIL 190
             T   + S   + ++        + ++++           SES     +     +    
Sbjct: 130 PKTEGSKPSASATPSSSATSQGRVLSEALKAPGTPTPSPSASESKKADDSKATPSASAPA 189

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF--MFGVRFLRDSDGNQYL--VEDK 246
                  DP+ L  L    A +   K     +                 GNQ+   +   
Sbjct: 190 PAPTPSSDPA-LANLQTKFATLDCTKEDQRTAAGQGVKPEDPMVACGQRGNQWGKWILGP 248

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE-----VTRDNIGKPLAVVLDGR 301
            +++G  +  A    D +  + +V + F + GA +F +      T+ +     A+VLDG 
Sbjct: 249 AQVAGTDVKDAKGVIDQQRGQWIVTMQFTDKGADKFAKITGELATKQSPQNQFAIVLDGE 308

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V++ P ++QA+  G A+ISG FT ++A  L  ML  G+LP+         V A LG + +
Sbjct: 309 VISDPSVSQALTGGNAEISGGFTQQSAQDLGNMLSYGALPLSFQEDSVTTVTAALGGEQL 368

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSI 417
             G  A   GL L+V++++V Y     +A  S+ ++ ILT  +++LLG      L LP++
Sbjct: 369 KAGLIAGAIGLALVVIYLLVYYRGLAFIAIVSLLVSAILTYTIMALLGKGIGFALNLPAV 428

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G ++ IG+  DS I+  ERIR+E R+ +++  +++  + RA  TI  S+  + +A  VL
Sbjct: 429 CGAIVAIGITADSFIVYFERIRDEIREGRTLRPAVERAWPRARRTILVSDFVSFLAAAVL 488

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           F    G V+GFA T+GL+ L+ +       + +M  + R K  
Sbjct: 489 FIVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPIMTLLARTKFF 531



 Score =  110 bits (273), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 72/184 (39%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                +   V   +  E ++ G++   I    ++IY+ + ++   A  AI +L++    T
Sbjct: 350 SFQEDSVTTVTAALGGEQLKAGLIAGAIGLALVVIYLLVYYR-GLAFIAIVSLLVSAILT 408

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               AL G       NL AV   +  IG + +  +V ++R+R  ++      + R  +++
Sbjct: 409 YTIMALLGKGIGFALNLPAVCGAIVAIGITADSFIVYFERIRDEIRE---GRTLRPAVER 465

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +        + +   +F++   + +     +  FA  +    ++          PI+  +
Sbjct: 466 AWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPIMTLL 525

Query: 824 YDWR 827
              +
Sbjct: 526 ARTK 529


>gi|218533350|ref|YP_002424165.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
 gi|218525653|gb|ACK86237.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
          Length = 1053

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/684 (10%), Positives = 175/684 (25%), Gaps = 46/684 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   +   I  +G +           + ++P   P               + +    
Sbjct: 8   RPIFAWAVSIFIMLVGAISIAF-----LPVSQYPDVAP-------------VTIQVTATY 49

Query: 63  DDFVNGF----LQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                      +    +E  + +        +     Q +I  SFA           V  
Sbjct: 50  PGAPPERLYDGVTRIIEEELNGIPGLMYFESTSDTSGQAQIMASFAPGSDPSKSTVAVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ + ++L     +  ++        +     +         +      R+ + ++   
Sbjct: 110 RIKRIEARLPRAVTQQGVIVEEASTSFLQFVIVSSKDGALSETDLGDLAARRILGELRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +L     T   ++      N      + G +  ++  
Sbjct: 170 SGVGRATLFSS-EKALRIWIDPVKLVGFSMTPGDVTAAVGAQNAQVASGIVGAQPAKEGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K ++S                +    +                 +       
Sbjct: 229 RIAANVLVKGQLS-------------TVAEFEEIVLRANPDGSLVRLRDVAEVELGGQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +            A L+          V          
Sbjct: 276 TMQTRLDGRPAAGIGIQLAPGGNALAAATGVKAKIAQLQRTLPANVSVTVPYDTTPFVEV 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV  V+F+ +   ++ ++    + + ++ T   L + G ++ + ++
Sbjct: 336 SIKKVLMTLAEAMALVFAVMFLFLQNFRYTIIPTIVVPVALLGTCGALLVAGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +      +    I       +   V 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMAEEGLPPREATAKAMGQITGAIVGITSVLVAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L FF G      R FA++M  SI  S F A+S+  A+   +     +K ++ +       
Sbjct: 456 LAFFPGSVGVIYRQFAVSMATSIAFSAFLALSLTPALCATL-----LKPVEASHGHAKGG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  +F                  +  L  +         G +++        D   
Sbjct: 511 FFGWFNRRFQAGTLAYRTGVAGMLRRPVRSLLVYAALVAALGWGYLRMPSSFLPIEDQGY 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V  + ++             ++            +           +     +   T+++
Sbjct: 571 VIVDAQTPPESSTGRTLDVAKRIEEHFGAEPSVVARVVLLGYGFSGQGQNASIAFVTLKD 630

Query: 654 TEIVGPKISRELIRKGIVGVIISA 677
            +  GP    E +      V+   
Sbjct: 631 WKERGPDDGAEALSARANAVLGGL 654



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 76/195 (38%), Gaps = 6/195 (3%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           ++    ++   +P +                I+K ++ +  +   +   +++  + + + 
Sbjct: 306 VKAKIAQLQRTLPANVSVTVPYDTTPFVEVSIKKVLMTLAEAMALVFAVMFLFLQNFRYT 365

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +     + + +  T G   + G   N+  +  ++  IG  V+D +VV + +     +   
Sbjct: 366 IIPTIVVPVALLGTCGALLVAGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMAEE 423

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +  R+   K++ +  G  V  +       +P+A + GSV      FA+ MA  I  +A 
Sbjct: 424 GLPPREATAKAMGQITGAIVGITSVLVAVFVPLAFFPGSVGVIYRQFAVSMATSIAFSAF 483

Query: 811 SSIFIAAPILLFIYD 825
            ++ +   +   +  
Sbjct: 484 LALSLTPALCATLLK 498



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 78/204 (38%), Gaps = 13/204 (6%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L    +    G  +  +L   + +  + ++   + + +   ++ W   
Sbjct: 834  DAMAEMERLAGQLPAGFDFAWTGQSLQEKLSGSQAVYLLALALFCVFLCLAALYESWSIP 893

Query: 694  LGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            L     L++        FA+    +  ++     ++T+IG +  + +++ +  ++   L 
Sbjct: 894  LA--VLLVVPTGVVGAVFAMLARDMPNDVYFKVGLITVIGLTAKNAILIIEVAKE---LV 948

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVA 808
                   +   ++        V TS A  + V+P+A+  G+ +    +    +  G+V A
Sbjct: 949  AQGRPVHEAALEACELRFRPIVMTSFAFILGVVPLAIATGASMNSQRAIGTGVFGGMVTA 1008

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               ++F A P+   +     ++ +
Sbjct: 1009 TVLAVF-ATPLFYVLIARAFRSRK 1031


>gi|71909439|ref|YP_287026.1| hydrophobe/amphiphile efflux-1 HAE1 [Dechloromonas aromatica RCB]
 gi|71849060|gb|AAZ48556.1| Hydrophobe/amphiphile efflux-1 HAE1 [Dechloromonas aromatica RCB]
          Length = 1062

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/461 (11%), Positives = 129/461 (27%), Gaps = 17/461 (3%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +   +    +E  + ++             N  +T++F      +     V 
Sbjct: 51  YPGANPKVIAETVASPLEESINGVENMLYMQSQANSDGNLTVTVNFKLGVDPDKAQQLVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  D ++  + T        ++                   +    D++  
Sbjct: 111 NRVSQALPRLPEDVQRLGVTTIKSSPTLTMVVHLISPDDRYDMTYLRNYAVLNVKDRLAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP ++ Q   T +++       N      + G       
Sbjct: 171 IQGVGEVGLFGSGNYAMRVWLDPQKVAQRGLTASEVVRAIREQNVQVAAGVIGASPSAAD 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V  +  +                 +    +                 I    + 
Sbjct: 231 VPLQLNVNAQGRL-------------QSEGEFGEIVLKTSPDGAVTRLADVARIELAASE 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L                +            A L           +         
Sbjct: 278 YGLRSLLDNKPAVAIPIFQAPGANALDVSAKVREAMAELSKDFPASVEYRIVYDPTQFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+ + +   +  ++   ++ ++++ T +LL   G ++   S
Sbjct: 338 ASIKAVVHTLLEAIALVVLVVIVFLQTWRASIIPLLAVPVSIVGTFSLLLGFGYSINALS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +        +   +           I    +T +   V 
Sbjct: 398 LFGMVLAIGIVVDDAIVVVENVERNIEAGLTPREATYRAMREVSGPIIAIALTLVAVFVP 457

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           L F     G   + FA+T+ +S +IS F ++++  A+   +
Sbjct: 458 LAFMTGLTGQFYKQFAMTIAISTVISAFNSLTLSPALAAML 498



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 54/146 (36%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L G + N+     ++ L+G +  + +++ +  R+  
Sbjct: 902  SLTLPLAVIMIVPMSILAALTGVWLTGGDNNIFTQIGLMVLVGLACKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +       +    L   + TS+A  + V+P+      G  +  +  I + FG+
Sbjct: 960  -LELQGATPLQAAIDASRLRLRPILMTSIAFIMGVIPLVTSTGAGSEMRHAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +   +  +F+     + +      + 
Sbjct: 1019 LGVTTFGLFLTPVFYVLLRTLDKGHK 1044



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/139 (17%), Positives = 60/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSIVGTFSLLLGFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                ++ R+   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 425 A---GLTPREATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAFNSLTLSPALAAMLLK 500


>gi|294628359|ref|ZP_06706919.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
           sp. e14]
 gi|292831692|gb|EFF90041.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
           sp. e14]
          Length = 372

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/265 (30%), Positives = 129/265 (48%), Gaps = 8/265 (3%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    +   F++ R    GISIL +I +I  L   GLN GI+F+GG       +    +
Sbjct: 10  RLHRGEVGYDFVKNRKIWYGISILITITAILGLAVRGLNMGIEFQGGAVFTTPKHMTTSV 69

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S   +  E     D   Q         +R+Q    D+     + + + K +         
Sbjct: 70  SQAETYAEEASGHDAIVQKLGDG---SLRIQIAGIDTGKSDEIKDALSKDLK---VNPEQ 123

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            N ++VGP   +++  K   G+ I  + ++IY+ I F+W  AL A+  LI DIT T G +
Sbjct: 124 LNADLVGPSWGKQIANKAWEGLAIFMVLVVIYLAIAFEWRMALAALVALIHDITITTGIY 183

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETL 769
           AL G E     V  +LT++GYS+ D VVV+D +++  K  T     ++ D+ ++SIN TL
Sbjct: 184 ALVGFEVTPGTVIGLLTILGYSLYDTVVVFDSLKEQTKDITKQTRWTYSDIANQSINGTL 243

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVI 794
            RS+ T++ A + V  +   GG V+
Sbjct: 244 MRSINTTVVALLPVAGLLFIGGGVL 268


>gi|218461181|ref|ZP_03501272.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           etli Kim 5]
          Length = 213

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 103/162 (63%), Positives = 141/162 (87%), Gaps = 1/162 (0%)

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P +T++ T+++GPK+S EL   GI+ V+I+++AMLIYIW+RF+W FA+GAI TL+LD+TK
Sbjct: 1   PTATVEGTDVIGPKVSGELASAGILSVVIASLAMLIYIWVRFEWPFAVGAIVTLVLDVTK 60

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +GFFA+ G++FNLTA+AA+LTL+GYSVNDKVVVYDRMR+NM+LY  S+  R++IDKSIN
Sbjct: 61  AIGFFAITGLDFNLTAIAAILTLVGYSVNDKVVVYDRMRENMRLY-KSMPLREIIDKSIN 119

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ETL RS+YT+  AF++++PMA+WGGS + SFAIPM FGI+VA
Sbjct: 120 ETLARSLYTNATAFLALVPMAIWGGSAVSSFAIPMVFGILVA 161


>gi|160883420|ref|ZP_02064423.1| hypothetical protein BACOVA_01389 [Bacteroides ovatus ATCC 8483]
 gi|237720203|ref|ZP_04550684.1| multidrug resistance protein [Bacteroides sp. 2_2_4]
 gi|260173958|ref|ZP_05760370.1| AcrB/AcrD/AcrF family multidrug resistance protein [Bacteroides sp.
           D2]
 gi|315922224|ref|ZP_07918464.1| multidrug resistance protein [Bacteroides sp. D2]
 gi|156111140|gb|EDO12885.1| hypothetical protein BACOVA_01389 [Bacteroides ovatus ATCC 8483]
 gi|229450755|gb|EEO56546.1| multidrug resistance protein [Bacteroides sp. 2_2_4]
 gi|313696099|gb|EFS32934.1| multidrug resistance protein [Bacteroides sp. D2]
          Length = 1065

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/694 (10%), Positives = 181/694 (26%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFSLPVEQYPDIAPPTIM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S     +  IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSSATNSGSVSITVYFKQGTDPDMAAVNVQNRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +               S  I      QI       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSILQMFSLYSPDDSYDENFLSNYISINLKPQILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +            + P  + Q     + ++      N       FG            
Sbjct: 175 DLMIMGGEYSMRVWMK-PDVMAQYKLIPSDITGVLAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                +I           
Sbjct: 234 YTGRLI----------------TPEEFGDIVIRSTDNGEVLKLKDVADIQLGQDSYAYHG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +     +    L                   +      S   
Sbjct: 278 GMDGHPGVSCMVFQTAGSNATEVNQNIDKLLEEASKDLPKGVELTQMMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I ++++ T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDFRSTLIPLVGIVVSLVGTFAFMAIAGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIIVVEAVQARFDVGYRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 GGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLKPYINEDGTQKNNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           I + F++ R+    +     +  + L+     +   D   G+    +
Sbjct: 518 NSAFDMMVDKYKTIVLFFIKRRWLTWSLLACSVVLLVLLMNNTKTSLVPDEDQGVIFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +            +       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLTTTDKVMERIEKRLIEIPQLKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q+        + ++    +  +    I
Sbjct: 638 PGDEDNVQSVIGQVYARTADIKDASVFAISPGMI 671



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 123/364 (33%), Gaps = 9/364 (2%)

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+++    L+         F        L      IS V  +MI    Y     +  + +
Sbjct: 135 TSILQMFSLYSPDDSYDENFLSNYISINLKPQILRISGVGDLMIMGGEYSMRVWMKPDVM 194

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +++ LIP  I              S   +               I  +    + + +   
Sbjct: 195 AQYKLIPSDITGVLAEQNIESATGSFGENSDETYQYTMKYTGRLITPEEFGDIVIRSTDN 254

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            ++  ++   +     D    +   + +  V            T V + + K + E    
Sbjct: 255 GEVLKLKDVADIQLGQDSYAYHGGMDGHPGVSCMVFQTAGSNATEVNQNIDKLLEEASKD 314

Query: 649 STIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
                        +  L       +  +I + I +++ +++    +   L  +  +++ +
Sbjct: 315 LPKGVELTQMMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQDFRSTLIPLVGIVVSL 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T  F A+ G   NL  + A++ +IG  V+D ++V + ++    +   S     +   +
Sbjct: 375 VGTFAFMAIAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQARFDVGYRSSYMASI--DA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +       + +S+      +P++  GG+       F + MA  + ++A +++ ++  +  
Sbjct: 433 MKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVAVGISAINALTLSPALCA 492

Query: 822 FIYD 825
            +  
Sbjct: 493 LLLK 496



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 77/253 (30%), Gaps = 12/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E  ++
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGDAIKAVQETAEQ 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I  GI  ++I  I   +Y      +      + ++
Sbjct: 850  SLPKGYGYDYGGITREENQQSGTTIIIFGICFLMIYLILSALY----ESFIIPFAVLLSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRD 759
               +  +  F  +FG+E N+     ++ LIG      +++     +         +    
Sbjct: 906  PCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERRKAGMGLIA 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +    L   + T++     + P+ +    G +   S    +  G+ +   + +FI 
Sbjct: 962  SAVSAAKARLRPILMTALTMIFGLFPLMMSSGVGANGNRSLGTGVVGGMTIGTLALLFIV 1021

Query: 817  APILLFIYDWRAK 829
              + +     + +
Sbjct: 1022 PTLFIAFQWLQER 1034


>gi|91978243|ref|YP_570902.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB5]
 gi|91684699|gb|ABE41001.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB5]
          Length = 1054

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/686 (10%), Positives = 173/686 (25%), Gaps = 48/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC IG +       P   + ++P   P               + +    
Sbjct: 8   RPVFAWVIALFICLIGAISI-----PFLPVAQYPIIAPP-------------SISVSTQY 49

Query: 63  DDFVNG----FLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                      +    +E  +          +     Q +I  +F         +  V  
Sbjct: 50  PGASPENLYNSVTRLIEEELNGANGILNFESTSDSLGQVEIIANFVPGTDTGMASVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V ++L     +  ++        + +   +        +     +IR  + ++   
Sbjct: 110 RIKRVEARLPRAVLQQGILVEEASSAVLQIITLSSTDGSLDEVGLGDFMIRNVLGEVRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L     T   ++      N        G        
Sbjct: 170 PGVGRATLY-STERAMRIWIDPDKLVGYNLTADDVTKAIQAQNAQVASGSIGAEPSSKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  K +++                +    +                 +       
Sbjct: 229 KISALVLVKGQLT-------------SPDEFGAIVLRANPDGSTVRLRDVGRVEVGGFSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 QFNTRLNGKATAGLSVLLAPTGNALATASAVEEKMKELSRFFPANISYQIPYNITPVVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV IV+F+ +   ++ ++    + + ++ T   L L G ++ + ++
Sbjct: 336 SITKVLYTLIEAVVLVFIVMFIFLQNIRYTIIPTIVVPVALLGTCLSLLLFGYSINMLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +     ++  S I    +  +   V 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMAEEGLPPKEATRKAMTQITSAIIGITLVLIAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + FF G      R F++TM  +I  S   A+S+  A+   +         + +       
Sbjct: 456 MAFFPGSVGIIYRQFSVTMVSAIAFSALLALSLTPALCATLLKPVVKGHAHAERGFFGRF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                       +I        G  + I   +  +       +  G           +  
Sbjct: 516 NRILDGTRERYSSIVRWNLGRTGRLMVIYAVLVGVLGWALVKMPGGFLPVDDQGFVTVDL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    S      + ++  +      DG  N      +             +  K  ++  
Sbjct: 576 QTPSDSSYNRTYDVVKQVEEYLLKRDGVDNVTFLTGFSFLGQGMNAAQAFVTLKHWSDRG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
              +         K    +    I  
Sbjct: 636 AKDSASAIVDDANKSLSSIRDARIAA 661



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V            + +        L  L    G+++A    +E   K+++   P 
Sbjct: 260 VRLRDVGRVEVGGFSYQFNTRLNGKATAGLSVLLAPTGNALATASAVEEKMKELSRFFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +           +    I K +  +I + + + I ++I  +   + +     + + +  T
Sbjct: 320 NISYQIPYNITPVVEASITKVLYTLIEAVVLVFIVMFIFLQNIRYTIIPTIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                LFG   N+  +  ++  IG  V+D +VV + +     +    +  ++   K++ +
Sbjct: 380 CLSLLLFGYSINMLTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPKEATRKAMTQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  ++      +PMA + GSV      F++ M   I  +A  ++ +   +   + 
Sbjct: 438 ITSAIIGITLVLIAVFVPMAFFPGSVGIIYRQFSVTMVSAIAFSALLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/414 (11%), Positives = 126/414 (30%), Gaps = 13/414 (3%)

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            +   +       +G  +++           +R  +    ++    +++ S+I D+ I A 
Sbjct: 603  VDNVTFLTGFSFLGQGMNAAQAFVTLKHWSDRGAKDSASAIVDDANKSLSSIRDARIAAQ 662

Query: 472  IATVVL-------FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                V        F F             +     +  A +    +    +       + 
Sbjct: 663  QPPPVDNLGNSSGFSFRLQDRGQKGNAALVRASEQLVAAANKSPILHKVYVEGLPPAPVV 722

Query: 525  INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               + R       +  + +         S   +           +             +L
Sbjct: 723  NLMIDREKAGAFGVTFEDINNTISTNLGSAYINDFPNRGRMQRVIVQADISDRMKAEEIL 782

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            A    +       L S    + S                  G++       + + +    
Sbjct: 783  AYSVKNSRGQLVPLSSFATIEWSKGPTQIVGFNYYPAVRISGEARPGYTSGDAIGEMERL 842

Query: 645  IVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
               L      +  G  +  +L   +    +++SA+ + + +   ++ W   L  +  + L
Sbjct: 843  AGQLPRGFGYDWTGQSLQEKLSGSQAPFILLLSALMVFLVLAALYESWTIPLTVLLAVPL 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             IT ++    +  +  ++     ++T+IG +  D +++ +  +   K      + R+   
Sbjct: 903  GITGSVIAATIRSLPNDVYFTVGLITIIGLAAKDAILIVEFAKDLRKE---GKTLREATM 959

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            ++ +      + T +A    VLPMA+  G+   S    +  G++    + + +A
Sbjct: 960  EACHLRFRPILMTGLAFVSGVLPMAIATGAGGKSQQ-ALGSGVMGGMIAVVVLA 1012


>gi|295688193|ref|YP_003591886.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
 gi|295430096|gb|ADG09268.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
          Length = 1040

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/694 (11%), Positives = 200/694 (28%), Gaps = 60/694 (8%)

Query: 1   MRNNPWLV--ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           +R + W +   +   +  I L+IA         + +FP+                  +  
Sbjct: 5   LRVSAWAIKNPIPVAVVFIALIIAGVGCYLGLPVKQFPNVSFPAVT---------VTVTQ 55

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +   +    ++  + +        S+ Q  +  T+ F      +   D+V   
Sbjct: 56  SGAAPGEMETQITRPVEDAVASISNVKTIRSSVVQGASTTTIEFELGEDLQKATDEVRSK 115

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  V  +L  +  +  +         I+        + +   E S  +       +   +
Sbjct: 116 IDQVRQQLPREVDEPTVTRLEIDSAPIITYAVAAPTMSN--TELSWFVDDTVTRTLQGQK 173

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q      +  ++    DP+R+     T  +++      +    G             
Sbjct: 174 GVAQVARVGGVGREINVIIDPARMAAFGVTAPQLNTALASFSVDAPGGRT---------- 223

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                     + G            +T   +  ++    G R         +G+      
Sbjct: 224 ----------VVGGREQTLRVLGAAQTLDELRALTIPTAGGRYVKLTDVAEVGQGAGEER 273

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L    +         + S     E        L+A    +         V     S
Sbjct: 274 GFARLDGKPVVAFQVMKTKESSDVQVEERVTKAIETLQAAQNGVTFTK-IYSTVDDTRAS 332

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +  + T      L  +V+F+ +   +  L+   ++ +++I T A ++++G +L + ++ 
Sbjct: 333 FTATEHTLLEGMLLASLVVFLFLREWRATLITAIAMPVSLIPTFAFMAMVGFSLNVVTLL 392

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + L IG+ VD  I+  E I +   + Q  F +   G       +  +  + +   V + 
Sbjct: 393 ALTLVIGILVDDAIVEIENIEKRVSRGQRPFEAAMEGADAIGLAVVATTFSIVAVFVPVS 452

Query: 479 FF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------------IRYKKMKSI 523
           +     G   + F +T+ +++L S+  A  +   +  +                   +S+
Sbjct: 453 YMPGTPGQFFKEFGLTVAVAVLFSLVVARFLTPLLAAYFLKPTKAPQPQKPFSGFYRRSL 512

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-----------G 572
           D     +F        I F      G   SI                Y            
Sbjct: 513 DWALDHKFLAFVLGGLITFGSLVGAGFLASIGVLAVGFQPPGNANYYYLKVQGPPGATTD 572

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
              +    +     +  + + V + + S        Q+    ++  V +       +  T
Sbjct: 573 DMDRTVQAITRSFRQREETAHVFAQVGSNIGSGWGGQSSADVRDATVTIVLHDKRDLRVT 632

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
            + + V+  + +I        ++     +   L 
Sbjct: 633 EIKQAVRASLRDIPDARVNLQSDWGAADVQMILT 666



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 72/241 (29%), Gaps = 6/241 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L+ V    +         +           ++ +    V     +    + +     
Sbjct: 256 YVKLTDVAEVGQGAGEERGFARLDGKPVVAFQVMKTKESSDVQVEERVTKAIETLQAAQN 315

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             T                      +    +A L+      +W   L     + + +  T
Sbjct: 316 GVTFTKIYSTVDDTRASFTATEHTLLEGMLLASLVVFLFLREWRATLITAIAMPVSLIPT 375

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             F A+ G   N+  + A+  +IG  V+D +V  + +    K  +      +   +  + 
Sbjct: 376 FAFMAMVGFSLNVVTLLALTLVIGILVDDAIVEIENI---EKRVSRGQRPFEAAMEGADA 432

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V T+ +     +P++   G+       F + +A  ++ +   + F+   +  +  
Sbjct: 433 IGLAVVATTFSIVAVFVPVSYMPGTPGQFFKEFGLTVAVAVLFSLVVARFLTPLLAAYFL 492

Query: 825 D 825
            
Sbjct: 493 K 493



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 79/218 (36%), Gaps = 7/218 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +  +       +     +   + ++          + L  V    T     + +    
Sbjct: 782 DTVADVSFEAGPAKIDRFGRKRQLTVEADLAGGAQLGQALNEVNNTPTMKKLPAGVAPAA 841

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALF 714
               +   EL     V ++ +   +   + + F+ +F  +  ++ L L I+  L    + 
Sbjct: 842 AGDQEAFVELFTGFAVALLSAIGLVYGVLVLLFRSFFKPVTILSALPLAISGALAALVVT 901

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++ ++   L L+G +  + +++ + + +  +     +S RD I  +  E     + 
Sbjct: 902 GQSLSMPSLIGFLMLMGLAAKNSILLVEYVIEEERA---GVSQRDAILDACRERARPIIM 958

Query: 775 TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
           T++A    +LP A+    G       A+ +  G++ + 
Sbjct: 959 TTLAMMAGMLPTALGLGKGSEFRQPMAVAVIGGLITST 996


>gi|170749449|ref|YP_001755709.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170655971|gb|ACB25026.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 1075

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/548 (10%), Positives = 150/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL           +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSMLIFIGGLLSLF-----AMPISEYPDVVPPSVV---------VRATFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIVETVATPIEEQINGVEGMLYMSSQATTDGIMTLTVTFRLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  +VT        ++                   +    D++   +   
Sbjct: 116 AEPRLPAVVRQLGIVTVKSSPDLTMVVHLVSPNGRYDMTYLRNYAVLNIKDRLARLDGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ +   +   +       N      + G          Q 
Sbjct: 176 QVQLFGSGDYAMRIWLDPQKVAEHGLSAGDVVREIQAQNVEAAAGVIGASPAVPGLDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +S                +    +                 I    +      
Sbjct: 236 SLNAEGRLSSEE-------------QFGDIVVKTGTDGAITRLRDVARIELGASDYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          S     +     +      A ++          +          S   
Sbjct: 283 LLDNKSAVAIPISQSPGSNAIQISDEVRRTMAEIKRTMPEGVDYQIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T A++ + G ++   S+ G+V
Sbjct: 343 VIHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFAVMHVFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +  +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIESGLSPREASYQAMREVSGPIIAIALVLVAVFVPLAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS   ++++  A+   +++        +  +    L     
Sbjct: 463 GLTGQFYKQFALTIAISTVISAINSLTLSPALSALLLKDHHAPKDRLTRVLDRLLGWFFR 522

Query: 539 AIQFMRAR 546
                  R
Sbjct: 523 RFNRAFGR 530



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 57/128 (44%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFAVMHVFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNI- 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
              + +S R+   +++ E  G  +       ++V     +     G     FA+ +A   
Sbjct: 424 --ESGLSPREASYQAMREVSGPII-AIALVLVAVFVPLAFISGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAINSL 488



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 42/110 (38%), Gaps = 6/110 (5%)

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ L+G S  + +++ +  R+   L     +      ++    L   + TSMA  + V
Sbjct: 937  IGLIVLVGLSAKNAILIVEFARE---LEFAGRTPLQAAIEASRLRLRPILMTSMAFIMGV 993

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            LP+      G  +  +  + +  G++   +  +F+     + +       
Sbjct: 994  LPLVTATGAGSEMRRAMGVAVFSGMIGVTAFGLFLTPVFYVLLRRLSGNR 1043


>gi|124025660|ref|YP_001014776.1| preprotein translocase subunit SecF [Prochlorococcus marinus str.
           NATL1A]
 gi|123960728|gb|ABM75511.1| preprotein translocase subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 318

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/313 (23%), Positives = 143/313 (45%), Gaps = 19/313 (6%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   I       ++ +    +   I   IC         LN G+D+ GG Q+ +  
Sbjct: 1   MKAKFNVQIYKNRKYVWLVSFSLCLISIIGMLICLKSSSIKAPLNLGLDYTGGTQITLER 60

Query: 586 NRP-----VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS---------VAQ 631
           +       ++ S + +N+ +L+  D SF +         ++Q                A 
Sbjct: 61  SCTDECISLNTSEISNNIIALKKQDKSFSSNTSPNLSRSQIQLLDNSQLISIRLPFLSAD 120

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                + +   +     +   + EI+GP + R+L++  ++ +  + + + +YI  R+   
Sbjct: 121 QSDSVVAEVNKSFGPFNNENTSVEIIGPSLGRQLLKSSLISLFFAFLGIALYINFRYDRR 180

Query: 692 FALGAITTLILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++  A+  L+ DI    G FA  G     E +     ++LT+ GYSVN+ VVV+DR+R+ 
Sbjct: 181 YSFLALFALLHDILIVCGVFAWLGYFFNVEVDSLFAVSLLTIAGYSVNNTVVVFDRIREK 240

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
             L    +S++  IDK++  TL R++YTS+   + ++ + +WGGS +  FA  +  G+++
Sbjct: 241 -SLLENQLSYKYQIDKAVGATLTRTIYTSLTTLLPLICILIWGGSTLYWFAFALLIGVII 299

Query: 808 AASSSIFIAAPIL 820
            + SSI +A  +L
Sbjct: 300 GSWSSIALAPSLL 312



 Score = 37.7 bits (85), Expect = 8.0,   Method: Composition-based stats.
 Identities = 18/108 (16%), Positives = 44/108 (40%), Gaps = 10/108 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  ++ ++   +C I ++  L      S+         K  ++LGLD  GG+ + LE  
Sbjct: 11  KNRKYVWLVSFSLCLISIIGMLICLKSSSI---------KAPLNLGLDYTGGTQITLERS 61

Query: 62  -EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFK 108
             D+ ++      S+ + +  K++     +     ++  +   D+   
Sbjct: 62  CTDECISLNTSEISNNIIALKKQDKSFSSNTSPNLSRSQIQLLDNSQL 109


>gi|329963723|ref|ZP_08301169.1| putative ATP synthase F0, A subunit [Bacteroides fluxus YIT 12057]
 gi|328527733|gb|EGF54725.1| putative ATP synthase F0, A subunit [Bacteroides fluxus YIT 12057]
          Length = 1059

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 72/621 (11%), Positives = 161/621 (25%), Gaps = 56/621 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P               + +  +
Sbjct: 8   KRPVMAISISVLILVIGLISLF-----TLPVEQYPDIAPPT-------------VYVSAN 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVT 116
                    L      L   +   E +   S          I + F      +  A  V 
Sbjct: 50  YTGADAEAVLNSVIMPLEESINGVENMMYISSTATNAGSATIQVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 110 NRVSKAQGLLPAEVTKIGVTTQKRQTSFLQIGALVSTDGRYDQTFLANYLDINVIPQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDVTAVLGEQNIEAPTGSLGENSKNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +   +            ++      
Sbjct: 229 Q----------------FTMKYRGRLKSVEEFQNTVVRSQSDGSVLRLKDVADVELGTLT 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +          +    +     
Sbjct: 273 YSFRSEMDSKPAVLFMMFQTAGSNATAVNKEITAQIKEMEKSLPEGTEFVTMMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 333 ASIHNVVETLVIAIILVILVVYFFLQDFKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIISCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG +      F +TM  ++ ISM +A+++  A+   ++R         +   R  
Sbjct: 453 PVTFMGGTSGVFYTQFGVTMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 533 LIPDCI------------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
              +                           ++    +    +  T       + +G I 
Sbjct: 513 AAYNASFNAVLGKYKKGVMFFIHHRWMVWTSLAATVVLLVYLMSTTKTGLVPQEDQGVIM 572

Query: 581 LGVLANRPVDLSVVRSNLESL 601
           + V  +    L      +  L
Sbjct: 573 VNVSTSPGSTLEETTKVMNKL 593



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 112/364 (30%), Gaps = 9/364 (2%)

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+ +    L    G   + F        +I     I  V  +M     Y     +    +
Sbjct: 135 TSFLQIGALVSTDGRYDQTFLANYLDINVIPQIKRIEGVGDVMELGDTYSMRIWLKPERM 194

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +++ L+P  +              S+  +  ++              +      V +   
Sbjct: 195 AQYGLVPSDVTAVLGEQNIEAPTGSLGENSKNVFQFTMKYRGRLKSVEEFQNTVVRSQSD 254

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             +  ++   +            + +    V            T V + +  +I E+   
Sbjct: 255 GSVLRLKDVADVELGTLTYSFRSEMDSKPAVLFMMFQTAGSNATAVNKEITAQIKEMEKS 314

Query: 649 STIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
                  +     +  L   I   +  ++I+ I +++ ++     +   L    ++I+ +
Sbjct: 315 LPEGTEFVTMMSSNDFLFASIHNVVETLVIAIILVILVVYFFLQDFKSTLIPSISIIVSL 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T       G   N+  + A++  IG  V+D +VV + ++          S       +
Sbjct: 375 VGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKFDAGYK--SPYLATKDA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + +     +  +       +P+   GG+       F + MA  + ++  S++ +   +  
Sbjct: 433 MGDVTMAIISCTCVFMAVFIPVTFMGGTSGVFYTQFGVTMATAVGISMISALTLCPALCA 492

Query: 822 FIYD 825
            +  
Sbjct: 493 IMMR 496



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 74/254 (29%), Gaps = 9/254 (3%)

Query: 579  IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
                        +S   +  + L     +  N        V           Q  + E+ 
Sbjct: 785  NMFVRNGTEMAPVSQFVTLNKVLGPETANRFNLYSAITANVNPAEGYSSGEVQKVIAEVA 844

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            ++ +                     + +   I  + I  I  LI   +   +      I 
Sbjct: 845  EQTLPLGYGYEYGGMAREEASTGGAQTVF--IYAICIFLIY-LILACLYESFLIPFAVIF 901

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            ++   +  +  F  + G+E N+     V+ LIG      +++ +     ++     +   
Sbjct: 902  SVPFGLMGSFLFAKVLGLENNIYLQTGVIMLIGLLAKTAILITE---YAIERRRKGMGIV 958

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            +    +    L   + T +     +LP+      G +   S    +  G+++   + +F+
Sbjct: 959  ESAYSAAQVRLRPILMTVLTMIFGMLPLMFSSGAGANGNSSLGTGVVGGMLIGTLALLFV 1018

Query: 816  AAPILLFIYDWRAK 829
                 +     + K
Sbjct: 1019 VPVFYIIFEYLQEK 1032


>gi|239831663|ref|ZP_04679992.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ochrobactrum intermedium LMG 3301]
 gi|239823930|gb|EEQ95498.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ochrobactrum intermedium LMG 3301]
          Length = 1055

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/632 (11%), Positives = 173/632 (27%), Gaps = 35/632 (5%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
              + ++P   P                       + +   +    +   + +       
Sbjct: 30  SLPIQQYPQITPPTV---------NVSASYPGASAEVIADVVGGPLETAINGVDGMMYMS 80

Query: 89  FSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
            +        ++++F      E     V    Q   S+L     +  +   +     ++ 
Sbjct: 81  STSSNAGQYSLSVTFEVGTDPELAQINVQNRAQLAISRLPAAVAQQGVSVRSRSPDFVLG 140

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
                     +A+E +       +D +       +          +    +P R+  L  
Sbjct: 141 IAFYSPDDSLNALEITNFATTTIVDALARVPGVGEANVVGASEYSMRVWLNPQRMDALGI 200

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           T  ++S      N        G   +R     QY +  +  +                 +
Sbjct: 201 TVDEVSAAIQRQNIQATLGQAGAPPMRVGTELQYTLVAEGRLRDTE-------------E 247

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
               +        + F      +                       +     +   T   
Sbjct: 248 FGNIVVRTGADGAKVFLRDIARLELGARNYASRASFAGHESAMLQINQSPGANAIQTATA 307

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
                  L +         V          S  +   T      +VL V F+ +   +  
Sbjct: 308 VEAELERLSSRFPAGLQYHVVYDATRFVEASLQLTTRTLFEAFVIVLAVTFIFLQDWRAT 367

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE--ENRKN 445
           L++  +I ++++  +A+L  +G +L + S+  +VL IGL VD  ILV E ++   E+  +
Sbjct: 368 LISALAIPVSMLGAVAVLFAVGYSLNMISLLALVLAIGLVVDDAILVVENVKHVLEDEPD 427

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFT 502
             V  +      +    I  + +  L       F    GG   R FA+T+  ++++S F 
Sbjct: 428 IPVIDATRKAMHQITGPIISTTLVLLAVVTPTAFLEGIGGQLYRQFAVTISSALVLSSFV 487

Query: 503 AISIVRAMMIFI-------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
           A+++  A+  F+        R   +     +           + I          G+   
Sbjct: 488 ALTLSPALAAFLLRHGQRGYRRGPLAWFSSSMEKTREGYGKIVGILVKHWVIPVAGVVAC 547

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
           F++     +         + +G + + +       L      +E+++      +      
Sbjct: 548 FALAYFVFVNLPATFLPDEDQGALFVDIQLPSAASLDRTNLIVENVRKTLSETEGVQDVI 607

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                   Q   +      +  +         
Sbjct: 608 TVAGFSILQSTSTPNSAMAVAALTPWADRETK 639



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 80/209 (38%), Gaps = 7/209 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               + A    LE +  +    +    + +         +   R      +I      I+
Sbjct: 301 AIQTATAVEAELERLSSRFPAGLQYHVVYDATRFVEASLQLTTRTLFEAFVIVLAVTFIF 360

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L +   + + +   +      G   N+ ++ A++  IG  V+D ++V + 
Sbjct: 361 LQ---DWRATLISALAIPVSMLGAVAVLFAVGYSLNMISLLALVLAIGLVVDDAILVVEN 417

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
           ++ ++      I   D   K++++  G  + T++     V P A     GG +   FA+ 
Sbjct: 418 VK-HVLEDEPDIPVIDATRKAMHQITGPIISTTLVLLAVVTPTAFLEGIGGQLYRQFAVT 476

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++  +V+++  ++ ++  +  F+     +
Sbjct: 477 ISSALVLSSFVALTLSPALAAFLLRHGQR 505



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 82/251 (32%), Gaps = 16/251 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   V L  V S    L    I+  N                   A   + ++  + + 
Sbjct: 792  RSGAMVPLRSVVSLTTVLAPFVITRYNLAASAQVNAVTAPGSSSGQAMAAMEQVASEVLP 851

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTL 700
            E                  +E    G   +I +   +  Y+++      W      I +L
Sbjct: 852  EGYGY-------EWSGLSFQERRSSGQETLIFALAFLFAYLFLVAQYESWALPAVVILSL 904

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               +   +     FG++ +L    A++ LIG +  + +++ +  ++  +     ++  + 
Sbjct: 905  GAALLGAVAGLTFFGLQNSLYVQIAMVLLIGLAAKNAILIVEFAKEQREA---GLTAGEA 961

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
                  +     + T+++  + +LP+ +    G     +  + +  G+V A S  + +  
Sbjct: 962  ARAGAEQRFRAVMMTAVSFILGILPLILSSGAGAGARQAVGVTIFGGMVAATSLGLLLTP 1021

Query: 818  PILLFIYDWRA 828
             +   I     
Sbjct: 1022 GLYFVIQRLAE 1032


>gi|195953490|ref|YP_002121780.1| protein-export membrane protein SecD [Hydrogenobaculum sp. Y04AAS1]
 gi|195933102|gb|ACG57802.1| protein-export membrane protein SecD [Hydrogenobaculum sp. Y04AAS1]
          Length = 500

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 154/527 (29%), Positives = 270/527 (51%), Gaps = 34/527 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M  N ++ IL      IG L+ +                    ++LGLDL+GG  +VL  
Sbjct: 1   MPKNIFINILIGTFIIIGSLLVVAF----------------KPVNLGLDLKGGISMVLAP 44

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D D  +    +  + ++     K  I V  +   Q+ I +   ++     + + +T + +
Sbjct: 45  DIDKVIKEEYENTASDISKLFLKNHINVLDVTPSQDGIYIDLLNASDYSKVYELLTKYYK 104

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      +  +   +  ++ +  S   + Q+  + I Q++E++R+R+DQ+G+ +  
Sbjct: 105 ----------NRIDISKVSPLKVKVRFSSIYLSQIKENVITQTVEVLRRRVDQLGVVQPV 154

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF------MFGVRFLR 234
           I RLG+ +++++LPG  D  R +++LG TA++   +V+  ++                  
Sbjct: 155 ITRLGNSKVMVELPGVMDLERAKKVLGKTAQLELMEVVDASASLDALQKELKPDEKILPS 214

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                 YLV+ K  I+G  L           + P V    +  GA  F   T+ +I K L
Sbjct: 215 KDGHEWYLVKKKPIITGADLKT-AYESTDSFNNPAVSFELNSKGAEIFGNFTQSHIDKRL 273

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A+VLD RV++APVI     S + QI+GNFT +    LAA+LRAG+LP  L+I+++  VG 
Sbjct: 274 AIVLDNRVMSAPVIRS-RISDQGQITGNFTPDQVRDLAAILRAGALPTTLHILQDAVVGP 332

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG  +I +   A +A  + +V  +I  Y   G+ A  +I +N +L  A L LLGATLTL
Sbjct: 333 TLGKAAIKQSIYAGLASFLFVVFLIITRYKTAGVTATIAIIMNGLLLWAGLVLLGATLTL 392

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IAGI+L +G+AVDSN+L+ ERI+EE  +  ++  +++ G+ R  S ++D++ T L+A 
Sbjct: 393 PGIAGIILNMGIAVDSNVLIFERIKEEIARGNTLRKAVEYGYKRVLSAVYDTHATLLVAA 452

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           ++LF F  G V+GFA T+ +  + S  + +   + M+  + + + +K
Sbjct: 453 LILFQFSSGPVKGFATTLTIGTIASFLSNVYYSKVMIDILAKLRMLK 499



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 75/178 (42%), Gaps = 4/178 (2%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I    +VGP + +  I++ I   + S + ++  I  R+K    + A   +I++      
Sbjct: 323 HILQDAVVGPTLGKAAIKQSIYAGLASFLFVVFLIITRYK-TAGVTATIAIIMNGLLLWA 381

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G    L  +A ++  +G +V+  V++++R+++ +       + R  ++      L
Sbjct: 382 GLVLLGATLTLPGIAGIILNMGIAVDSNVLIFERIKEEIA---RGNTLRKAVEYGYKRVL 438

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                T     ++ L +  +    +  FA  +  G + +  S+++ +  ++  +   R
Sbjct: 439 SAVYDTHATLLVAALILFQFSSGPVKGFATTLTIGTIASFLSNVYYSKVMIDILAKLR 496


>gi|190893231|ref|YP_001979773.1| multidrug efflux transporter protein [Rhizobium etli CIAT 652]
 gi|190698510|gb|ACE92595.1| probable multidrug efflux transporter protein [Rhizobium etli CIAT
           652]
          Length = 1036

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 90/684 (13%), Positives = 187/684 (27%), Gaps = 39/684 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL           + ++P   P              +      
Sbjct: 7   RRPIFAWVIAITIMLAGLLAIF-----TLSISQYPDIAPTTVR---------INATYRGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + L        +       I L+F  S   +    +V   LQ 
Sbjct: 53  SAETVEKSVTTIIEDGMTGLDDLTYMTSTSSTGSASIQLTFGTSIDPDIAQVQVQNKLQL 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D     +  T      +++           +++    +     DQI   E   
Sbjct: 113 VQSQLPGDVIDAGISVTRSTSSILLVGSLVSTDGKRSSVDLGNLMSTSIEDQIQRLEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +   T + ++      N        G +          
Sbjct: 173 SINVFGSG-YAMRVWLDPYKLLKYQLTPSDVTAAIQAQNTQVSVGSLGAQPTIPGQQLNV 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++                     I   E             I           
Sbjct: 232 TITAQSQLT-------------TVADFEHIILKVEKDGATVRLSDVSRIEIGQESYGGSS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +    +     +   T         ++                      S   
Sbjct: 279 RYNGLPSSGFAVNLAIGANAIDTAARVRSALDVIGRTLPEGVKITYPYDTTPFVELSIEK 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +VL + +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 339 VVHTLIEAIVLVFVVLLVFLQNLRATLIPTIAVPVVLLGTFGVLAATGYSINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     + + S   + +   S     I    +      + + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERIMSEEKLSPIEATEKSMSEITGAIVGIALVLTAVFIPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFF 532
           GG      R F+IT+  ++L+S   AI +  A+   +        K       N      
Sbjct: 459 GGSTGIIYRQFSITIVSAMLLSALVAIVLTPALCATMLKPVSEHRKHRVGDWFNRNFTRS 518

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY--GIDFKGGIQLGVLANRPVD 590
                  I ++  R   V +  L        LFT   +     + +G +   V       
Sbjct: 519 TNGYVRTIGYLLKRPIRVMLVFLLVGAGCAYLFTRLPSSFLPQEDQGVLLTIVTTPPGST 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               ++ +E ++      +    E  F        G       V   +K       P  +
Sbjct: 579 TQQTQAVVEKVENYYRENEKDAVESVFGALGFGFNGSGQNSAIVFTKLKDFSQRTDPNLS 638

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
            Q+      +    +    +  ++
Sbjct: 639 AQSVVSRALRSFFAMREAQVFALL 662



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 58/133 (43%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G  A  G   N   + A++  IG  V+D +VV + +     
Sbjct: 361 LRATLIPTIAVPVVLLGTFGVLAATGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERI 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S  +  +KS++E  G  V  ++      +PMA +GGS       F+I +   ++
Sbjct: 419 MSEEKLSPIEATEKSMSEITGAIVGIALVLTAVFIPMAFFGGSTGIIYRQFSITIVSAML 478

Query: 807 VAASSSIFIAAPI 819
           ++A  +I +   +
Sbjct: 479 LSALVAIVLTPAL 491



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 66/169 (39%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   IS + + + +   ++ W      I  + + I   L    LFG   ++     +
Sbjct: 866  QAPMLYAISVLVVFLCLAALYESWSIPFSVIMAVPVGILGALAAATLFGQANDVYFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT IG +  + +++ +  +       + +   +   ++    L   + TS+A  + V+P+
Sbjct: 926  LTTIGLAAKNAILIVEFAKD---RMESGMGLYEATLEAARLRLRPIIMTSLAFILGVVPL 982

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+    G +   +  I +  G++ A    IF      + I    A   +
Sbjct: 983  AIATGAGSAAQNAIGIGVLGGMLAATMLGIFFVPSFFVVIRRIFATRGK 1031


>gi|37526666|ref|NP_930010.1| multidrug efflux system subunit MdtC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|60390064|sp|Q7N3E1|MDTC_PHOLL RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|36786098|emb|CAE15150.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 1036

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 80/622 (12%), Positives = 173/622 (27%), Gaps = 46/622 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I   G+L           +   P                  +  L   
Sbjct: 9   QRPVATTLLSLAITLCGVL-----GFTLLPVSPLPQVDFPVI---------SVYASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S       ITL F  +R   + A  V   L  
Sbjct: 55  SPETMASSVATPLEHALGRIAGVNEMTSSSSLGSTNITLEFDLNRDINSAARDVQAALNA 114

Query: 122 VNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             S L      +         +  I++     D    +  +       Q   +I   E  
Sbjct: 115 AQSLLPSGMPSRPHYYKVNPTDAPIMILTLTSD--TYNQGQLYDFASTQLAQKIAQVEGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +       L  +  E +P  L     +   +       N  +                 
Sbjct: 173 SEVSVGGSSLPAVRVELNPGVLFHQGVSLDAVRKAISNANVRRPQGYVDSEQQHWQIQMN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++                      +    I                N+   +  V   
Sbjct: 233 DELKTA--------------------ENYRPIIVHYNNNSPVRLQDVANVKDSVQNVRAA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +         I   +A  +   T+         L           V +        S  
Sbjct: 273 GMSGGEPAILLIIRREAGANIIATVNRIREQLPALHESIPASIQLKVAQDRTPTIRASIV 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    I  GLV++V+F+ +  G+  L+   ++ +++I T   + L G +L   S+  +
Sbjct: 333 EVERALVIAIGLVILVVFLFLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I+V E I            +   G      T+   +I+ +   + L   
Sbjct: 393 TVATGFVVDDAIVVLENISRHLEAGIKPMQAALQGVREVGFTVLSMSISLVAVFIPLLLM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPLSRF 531
               G   R FAIT+  SI IS+  ++++   M   +++ ++ K+           L   
Sbjct: 453 DGLVGRLFREFAITLTTSISISLLVSLTLTPMMCAHLLKSQRPKAQKKIRGFGKVLLKIQ 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            +    +      +R+  + ++ + ++     +      +     G +   V A++ +  
Sbjct: 513 QVYGRSLMWVLNHSRWVLLILAGIIALNVWLYINIPKTFFPEQDTGRLLGFVRADQSISF 572

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
             +R  +++      +    D 
Sbjct: 573 QSMREKMKNFMQTINADPTVDS 594



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 94/278 (33%), Gaps = 7/278 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                 +  +      +    I +    N PV L  V +  +S+Q    +  +       
Sbjct: 223 EQQHWQIQMNDELKTAENYRPIIVHYNNNSPVRLQDVANVKDSVQNVRAAGMSGGEPAIL 282

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L+  +    + +A    +      + E +P S             R  I +    ++I+ 
Sbjct: 283 LIIRREAGANIIATVNRIREQLPALHESIPASIQLKVAQDRTPTIRASIVEVERALVIAI 342

Query: 678 IAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +++ +++  +     L     + + +  T     L G   N  ++ A+    G+ V+D
Sbjct: 343 GLVILVVFLFLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMALTVATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +VV + +    +     I       + + E     +  S++     +P+ +  G V   
Sbjct: 403 AIVVLENI---SRHLEAGIKPMQAALQGVREVGFTVLSMSISLVAVFIPLLLMDGLVGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              FAI +   I ++   S+ +   +   +   +   A
Sbjct: 460 FREFAITLTTSISISLLVSLTLTPMMCAHLLKSQRPKA 497



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 92/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +    +  +  +++  TE+   ST++ T     +I +E ++  +  ++ + I 
Sbjct: 803  TIAFNVPEGYTLSDAINAIERTTTELRVPSTVRGTFAGTAQIFQETLKSQLFLILAAIIT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYLVLGILYESYIHPLTILSTLPSAGIGALLALELFDTPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     I  RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  IMVDFAIEAQRNGN--ICARDAIFQASLLRFRPILMTTLAALFGSLPLVLSSGDGTELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + L     RA   R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLCFDRLRAYPNR 1017


>gi|170701623|ref|ZP_02892568.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
 gi|170133477|gb|EDT01860.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia ambifaria IOP40-10]
          Length = 1045

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/615 (11%), Positives = 166/615 (26%), Gaps = 41/615 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G             + ++P   P              +       
Sbjct: 8   RPVFAWVIALFIMLGGAFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSATSSAGAASLYLTFKQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      +   ++     D      ++         +  +   +   +
Sbjct: 114 EARLPEPVRRDGIQVEKAADNIQLVVSLTSDDGRMTDVQLGEYASANVVQALRRVDGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKLAGHGLTASDIASAVRAHNARVTVGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +             I            
Sbjct: 233 VFADAPL-------------KTPADFGAIALRTQPDGSALHLRDVARIEFGGNDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L A   P     +          S +  
Sbjct: 280 VNGKVATGMGIKLAPGSNAVSTEKRVRATMDELSAYFPPGVKYQIPYETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+    + + +  T  ++   G ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  + + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEEGLAPYDATVKAMRQISGAIIGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+++ +SI  S F A+S+  A+   +          +       +     
Sbjct: 460 GAVGNIYRQFALSLAVSIGFSAFLALSLTPALCATLLKPVSGDHHEKRGFFGWFNGFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     +   W V    L +  ++ L          + +G   + V+  +  
Sbjct: 520 STQRYATRVGAMLKKPLRWLVVYGALTAATALMLTQLPSAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIG 604
            L+    ++  ++  
Sbjct: 580 PLAETMQSVREVESY 594



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 72/202 (35%), Gaps = 8/202 (3%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                   ++ +       V       T         +++   I   ++  + M +++  
Sbjct: 301 TEKRVRATMDELSAYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ- 359

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                  L     + + +  T G     G   N+  +  ++  IG  V+D +VV + +  
Sbjct: 360 --NLRATLIPTLVVPVALAGTFGVMYAAGFSINVLTMFGMVLAIGILVDDAIVVVENV-- 415

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
              +    ++  D   K++ +  G  +  ++      +PMA +GG+V      FA+ +A 
Sbjct: 416 ERLMVEEGLAPYDATVKAMRQISGAIIGITVVLTSVFVPMAFFGGAVGNIYRQFALSLAV 475

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            I  +A  ++ +   +   +  
Sbjct: 476 SIGFSAFLALSLTPALCATLLK 497



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/210 (13%), Positives = 71/210 (33%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           I  I              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAPGHSSGEAMAAIERIAAKLPAGIGHAWSGQSFEERLSGAQAPMLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W      +  + L +   +    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ +  +    L    +S  D   ++    L   V TS+A  + VLP+A   G+  G+  
Sbjct: 938  LIVEVAKD---LVAQRMSLVDAALEAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQM 994

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +  G++ A   ++F+     + +  
Sbjct: 995  AIGTGVLGGMITATVLAVFLVPLFFVIVGR 1024


>gi|222475567|ref|YP_002563984.1| protein export membrane protein secF (secF) [Anaplasma marginale
           str. Florida]
 gi|222419705|gb|ACM49728.1| protein export membrane protein secF (secF) [Anaplasma marginale
           str. Florida]
          Length = 319

 Score =  165 bits (417), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/281 (26%), Positives = 133/281 (47%), Gaps = 4/281 (1%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVDLSVVRSN 597
              F++ R   + IS++  + S  L+   G+  G DF GG+      +     +  VR+ 
Sbjct: 21  NFNFIKHRKLALLISLVLLLGSALLIALKGVTLGADFTGGMVANFSLDDGHSTVEQVRAA 80

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L    +  +S Q F       + +            +  +        +   T +  + V
Sbjct: 81  LSDAGLSGLSVQGFGDSGQEFMVVFRGTAGPGGSDELQRIKDAI--NGIGAITYKRLDYV 138

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G ++    + +G++ V+ S + M +Y+  RFK  FA+G +  L+ D+  T+G  +  GIE
Sbjct: 139 GAQVGVAQVTRGVIAVLCSLVGMFLYLCCRFKLQFAVGGVLALVHDVAITMGMVSATGIE 198

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTS 776
           F L A A VL +IGYSVND VV+YDR+R+  +  +        +I+  IN TL R++ TS
Sbjct: 199 FGLPATAGVLMIIGYSVNDSVVIYDRIRELARGESVHGKDVGGIINAGINSTLSRTLLTS 258

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
               ++ +P+ +     +    + + FG++V   SSIFI+ 
Sbjct: 259 GTTLLAAVPLILLCEGAVHDLGVIVFFGVIVGTYSSIFIST 299


>gi|207722944|ref|YP_002253375.1| drug efflux transmembrane protein [Ralstonia solanacearum MolK2]
 gi|206588131|emb|CAQ18708.1| probable drug efflux transmembrane protein [Ralstonia solanacearum
           MolK2]
          Length = 922

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/621 (11%), Positives = 166/621 (26%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+            +   P                  +  L    
Sbjct: 10  RPVATALLTIGVALAGIAA-----FNLLPVSPLPQVDFPTI---------SVNASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               ++TL F  SR  +  A  V   +   
Sbjct: 56  PETMAATVATPLERSLGRIAGITEMTSQSSLGSTRVTLQFDLSRDIDGAARDVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L      N          + ++    +        E           ++       Q
Sbjct: 116 RSLLPSGLPSNPTYRKVNPADAPIMI-LGLTSDTKSRGELYDAASTILAQKLSQISGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P+ L +   +T  +       N +K   M               
Sbjct: 175 VNIGGASLPAVRVELNPTALNKYAISTETVRTVITATNANKPKGMLEA------------ 222

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G  +    AN   +  +    +                 +   +  + +   
Sbjct: 223 --------GDRVWTIYANDQARKAEEYKPLIIAYRNGAPVRLSDVAEVTDSVQDIRNYGS 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I + +   +   T++    +   LR          V          S    
Sbjct: 275 ANGKPSVLLIINRQPGANIIDTVDRINAILPYLRNTIPAQINLDVMMDRTPTIRASLRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV++V+++ +   +  L+   ++ +++I T  ++ L G +L   S+  + +
Sbjct: 335 ERTLMLSIGLVIMVVYLFLRNLRATLIPSVAVPVSLIGTFGVMYLCGYSLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +            +   G      T+   + + +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENVSRHIENGMRPMQAALKGAREVGFTVVSMSFSLIAVFIPLLMMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFF 532
             G   R FA+T+ ++IL+S+  +++    M   +             +  +        
Sbjct: 455 IVGRLFREFAVTLSVAILVSLVISLTTTPMMCARLLKPASEEEPGWFHRKTERFFTLLLD 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +A     +    + +     +     +      +     G +   + A++ +   
Sbjct: 515 GYRHSLAWALRHSWLTLMILLATVCLNVYLYIVVPKGFFPQQDVGRLMGFIQADQSISFQ 574

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +R+ L             D 
Sbjct: 575 AMRTKLVDFIHIVQQDPAVDS 595



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 88/245 (35%), Gaps = 10/245 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV LS V    +S+Q               L+  +    + +     +  +  
Sbjct: 246 IAYRNGAPVRLSDVAEVTDSVQDIRNYGSANGKPSVLLIINRQPGANIIDTVDRINAILP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK--GIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            +   +P     +  +      R  +R     + + I  + M++Y+++R      L    
Sbjct: 306 YLRNTIPAQINLDVMMDRTPTIRASLRDVERTLMLSIGLVIMVVYLFLR-NLRATLIPSV 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T G   L G   +  ++ A+    G+ V+D +VV + +    +     +   
Sbjct: 365 AVPVSLIGTFGVMYLCGYSLDNLSLMALTVATGFVVDDAIVVLENV---SRHIENGMRPM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
               K   E     V  S +     +P+ + GG V      FA+ ++  I+V+   S+  
Sbjct: 422 QAALKGAREVGFTVVSMSFSLIAVFIPLLMMGGIVGRLFREFAVTLSVAILVSLVISL-T 480

Query: 816 AAPIL 820
             P++
Sbjct: 481 TTPMM 485


>gi|307150751|ref|YP_003886135.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 7822]
 gi|306980979|gb|ADN12860.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 7822]
          Length = 1097

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 74/548 (13%), Positives = 149/548 (27%), Gaps = 43/548 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G +           LD+ P   PK              +V+  +
Sbjct: 9   KRPVLTTVCSIVIVLVGTICMA-----LLPLDKLPQIAPK-------------QIVVSAN 50

Query: 62  EDDFVNGF-LQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   +        +   +     + I++SF            V 
Sbjct: 51  YVGADAKTTVDNVTTPIERQINGVDYMRWMTSNTDNNGNSSISVSFPVEIDSNTAQVLVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI-----EQSMEIIRQRI 171
             +   N  L        + T  +     ++     D+             +  + R   
Sbjct: 111 NRVAQSNQFLPQSVIATGVNTRKQSPSITLVYAFYSDKGADGKPLYPISFVNNYVDRYIW 170

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           + +   E           +  +    DP +L     T   +       N        G +
Sbjct: 171 NDLRRIEGVGDLALFGGDIYAMRIWVDPDQLAGRGLTATDVVQAIQRQNFEVGAGSVGAQ 230

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
               +   Q  V  K  ++                   + +   + G     +       
Sbjct: 231 PAPPNQQFQIPVRVKGRVT------------TPEEAENIVVKVGDNGTLIRIKDIGRAEL 278

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
              +      +         +       +   T        A L     P     +   +
Sbjct: 279 GSQSYSTLAYLDGDNPAVALVIYQLPGSNALDTANAIKAKLAELEKSFPPGLKYAITLDS 338

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 +      T      LV++++F+ +   +  L+   +I + +I  +  L  LG T
Sbjct: 339 TLFINAALKDLSITLIQAIALVVLIIFIFLQDWRTTLIPAVAIPVALIGAMIGLKALGFT 398

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS-TIFDSNITA 470
           L   ++   VL  GL VD  I++ E I  +  +      +        +  TI  S +  
Sbjct: 399 LNQLTLFACVLATGLVVDDGIVIVEAISTKLSQGMRPVQAALDSMQELFGATIATSVVLM 458

Query: 471 LIATVVLFFFGGGA--VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            +   V FF G      R FA+T+   I  S F A+S    M   ++R        +  L
Sbjct: 459 AVFVPVSFFPGTTGIVYRQFALTIAFGIAFSTFNALSFSPTMSGVMLRPPTPPHGPLAWL 518

Query: 529 SRFFLIPD 536
            R F    
Sbjct: 519 FREFNRMF 526



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 86/229 (37%), Gaps = 7/229 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ L S     +++ + D     LV  Q    +++     ++    ++ +  P       
Sbjct: 275 RAELGSQSYSTLAYLDGDNPAVALVIYQLPGSNALDTANAIKAKLAELEKSFPPGLKYAI 334

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
            +         ++   + +I +   +++ I+I    W   L     + + +   +     
Sbjct: 335 TLDSTLFINAALKDLSITLIQAIALVVLIIFIFLQDWRTTLIPAVAIPVALIGAMIGLKA 394

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   N   + A +   G  V+D +V+ + +       +  +        S+ E  G ++
Sbjct: 395 LGFTLNQLTLFACVLATGLVVDDGIVIVEAI---STKLSQGMRPVQAALDSMQELFGATI 451

Query: 774 YTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            TS+      +P++ + G+       FA+ +AFGI  +  +++  +  +
Sbjct: 452 ATSVVLMAVFVPVSFFPGTTGIVYRQFALTIAFGIAFSTFNALSFSPTM 500


>gi|284035752|ref|YP_003385682.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Spirosoma
           linguale DSM 74]
 gi|283815045|gb|ADB36883.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Spirosoma linguale DSM 74]
          Length = 1062

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/526 (12%), Positives = 151/526 (28%), Gaps = 43/526 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++ +++  +G++  L        + +FP   P               + +    
Sbjct: 8   RPVLATVISTLLVILGVISLL-----SLPVTQFPEIAPP-------------SVQVAASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +     +    I + F      +  A  V  
Sbjct: 50  PGANADVVARSVATPLEEAINGVENMTYMTSSSGNDGSVAINIYFKLGTNPDLAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L  +  +  + T  ++   I++   N ++                I ++   
Sbjct: 110 RVAKATSLLPAEVIQAGISTQKQQNSMIMILNLNSNEEAYDETFLQNYAKINLIPELQRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q +        +     P RL  L  +  ++       N        G       +
Sbjct: 170 NGVGQVMVFGVKDYSMRVWLKPDRLVALGLSPQEVLSAIREQNLEAAPGKIGE---NSRE 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y+++ K ++              +  +    I                 I       
Sbjct: 227 AFEYVIKYKGKL-------------NQPEQYENIILKANTDGSLIQLKDVARIEFGSFTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +          +  A  + N        +               +          
Sbjct: 274 SGDTRVNGKPSVGIAINQMAGSNANDIQVAILSIMDKAAGAFPKGINYTIGYSTKTFLDE 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+F+ +   +  L+   ++ + ++ T   + L G T+ L ++
Sbjct: 334 SIDQVTHTLIEAFILVFIVVFLFLQDFRSTLIPAIAVPVAIVGTFFFMQLFGFTINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +  +  QS   +           I    +      V 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHAKMEKSRQSARSATIQSMQEISGAIISITLVMAAVFVP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           + F  G      + FA T+ ++ILIS   A+++  A+   +++   
Sbjct: 454 VGFMNGPAGVFYQQFAFTLAIAILISAVNALTLSPALCALLLKNPH 499



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/196 (16%), Positives = 79/196 (40%), Gaps = 8/196 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +++       + +  +   +T+    +   ++    I   I+  I + +++     +  
Sbjct: 306 SIMDKAAGAFPKGINYTIGYSTKTFLDESIDQVTHTLIEAFILVFIVVFLFLQ---DFRS 362

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T  F  LFG   NL  + A++  IG  V+D +VV + +    K+  
Sbjct: 363 TLIPAIAVPVAIVGTFFFMQLFGFTINLLTLFALVLAIGIVVDDAIVVVEAVH--AKMEK 420

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
           +  S R    +S+ E  G  +  ++      +P+    G        FA  +A  I+++A
Sbjct: 421 SRQSARSATIQSMQEISGAIISITLVMAAVFVPVGFMNGPAGVFYQQFAFTLAIAILISA 480

Query: 810 SSSIFIAAPILLFIYD 825
            +++ ++  +   +  
Sbjct: 481 VNALTLSPALCALLLK 496



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 9/225 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +N L       G +       + ++           +  T         E+       +
Sbjct: 818  TRNNLFTSVAINGQAKPGYSTGDAIRAVEEVAKQSLPVGYTYEWTGMTREEIAAGSQSSL 877

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I     + +Y  +      +      + ++   I    GF  L GI+ N+     ++ LI
Sbjct: 878  IFGLSLVFVYFLLAAQYESYVLPWAVLLSIPTGILGVFGFINLAGIDNNIYVQVGLIMLI 937

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
            G    + +++ +     ++     +        +    L   + TS A  + ++P+    
Sbjct: 938  GLLAKNAILIVEFA---IQRRQAGMGLVASALDAAKLRLRPILMTSFAFIVGLVPLMSAT 994

Query: 791  GSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G+        +I  A G++      +FI   + +     + K  R
Sbjct: 995  GASAKGNHSISIGTAGGMLTGVLLGLFIIPVLFVIFQGIQEKIIR 1039


>gi|298530349|ref|ZP_07017751.1| acriflavin resistance protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509723|gb|EFI33627.1| acriflavin resistance protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 1027

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/603 (12%), Positives = 171/603 (28%), Gaps = 43/603 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+++ ++   G+         Q  +   P                   +VL   
Sbjct: 8   RRPALTVVIFLVLAIFGVY-----GFTQMPIQENPDVEFPVVS---------VLVVLPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S ++     V +  Q    +T  F   R ++  A  V   ++ 
Sbjct: 54  APEILEQEVVEPLEAELSTIEGLKELVSTAEQESATVTAEFELWRDQDLAAQDVRDAVER 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D +  ++         I+      D+     +  S         ++       
Sbjct: 114 ARRHLPDDAEAPVVRKMDMDAGPIMWFTLQGDERWDD-MSMSRYAEDVLKPRMETLRGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +  + DP  L     T   +     + N          +    +   + 
Sbjct: 173 RVIVGGSRDYAVRVKIDPELLAAHRLTIQDVVDTVQMENVDIPSGRIEGKTREFTIRTRA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                    +P  D+  D                  +       
Sbjct: 233 --------------------RFSEAEPFNDLVIDHRDGSPVRLSDVGEAVDGVESYRRLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +     E A            P                +   
Sbjct: 273 RFNGEPTVGLGLVRQTGANTVEMAEAARESMRRSAENFPPGLEYQEAMDASEYIEENIRD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I A +V+ V+   +  G+  ++   +I  +++  LA +++LG ++ + ++  ++
Sbjct: 333 LQTTIFIAATMVVFVVLFFLRSGRGTIIVALAIPTSLLTGLAAINVLGFSINVLTMLALI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I++ ER             +  +G +  A+  I +S     +   V F  
Sbjct: 393 LVIGIVVDDAIVILERNFRHMEHGADPLPAARVGTTEMAFPAIANSLSLGAVFIPVAFTG 452

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G     F +T+ +++  S F A+++   +   +++YK+ KS       R     + I
Sbjct: 453 GIIGRFFYEFGLTVAVTVFASTFVALTLTPMLCSRLLKYKERKSWFFKMSERHLNHVEAI 512

Query: 539 AIQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   F R     V   + F    +  +         + +  + +     +   L  
Sbjct: 513 YAWVLARAFKRRALVVVIALLAFGAGIMAYMNIPKEFAPDEDRSRMMIVFETPQGATLPE 572

Query: 594 VRS 596
             S
Sbjct: 573 TDS 575



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 84/275 (30%), Gaps = 9/275 (3%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVR 620
             + T       +    + +      PV LS V   ++ ++      +          + 
Sbjct: 226 FTIRTRARFSEAEPFNDLVIDHRDGSPVRLSDVGEAVDGVESYRRLARFNGEPTVGLGLV 285

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            Q             E +++      P    Q        I   +        I + + +
Sbjct: 286 RQTGANTVEMAEAARESMRRSAENFPPGLEYQEAMDASEYIEENIRDLQTTIFIAATMVV 345

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + ++        +     +   +   L    + G   N+  + A++ +IG  V+D +V+
Sbjct: 346 FVVLFFLRSGRGTIIVALAIPTSLLTGLAAINVLGFSINVLTMLALILVIGIVVDDAIVI 405

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GS 796
            +R   N +                 E    ++  S+ +  +V     + G +I      
Sbjct: 406 LER---NFRHMEHGADPLPAARVGTTEMAFPAIANSL-SLGAVFIPVAFTGGIIGRFFYE 461

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           F + +A  +  +   ++ +   +   +  ++ + +
Sbjct: 462 FGLTVAVTVFASTFVALTLTPMLCSRLLKYKERKS 496



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 88/246 (35%), Gaps = 13/246 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +  V L  +    E++   +I   +     +             A   +   ++ ++ 
Sbjct: 772  QRDELVSLDNLVHIQETIGPSEIHRFDRVRSASVTASTPPGVALGDAVDELETYLEAELP 831

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                      +E+              + +I + I + + +  +F+ + + L  +T L L
Sbjct: 832  AGTDYRMAGMSEVFEESFYYL-----ALALIFAIIFIYLVLSAQFESFIYPLSIMTALPL 886

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                  G   L  + F++ A   ++ L+G    + +++ D       L            
Sbjct: 887  ATVGAFGILWLLNLNFSVYAFIGLIMLMGLVTKNAILLVD---YTNVLVARGRPPVQAAQ 943

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++  E     V T+++  + + P+A+    GG       + +A G+  + + ++ I  P+
Sbjct: 944  EAARERFRPVVMTAISTILGITPIALGYGAGGEARVPLGVAVAAGLFTSTALTL-IVIPV 1002

Query: 820  LLFIYD 825
            +  +YD
Sbjct: 1003 VYTLYD 1008


>gi|198275256|ref|ZP_03207787.1| hypothetical protein BACPLE_01415 [Bacteroides plebeius DSM 17135]
 gi|198271839|gb|EDY96109.1| hypothetical protein BACPLE_01415 [Bacteroides plebeius DSM 17135]
          Length = 1045

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/680 (10%), Positives = 178/680 (26%), Gaps = 50/680 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                  +  +I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPILSCAISVLILILGVI-----GLSNLPMEQYPDIAPPTIM---------VSTTYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +E  + ++       +     +  IT+ FA     +         +  
Sbjct: 55  AETVLKSVIAPLEEAINGVENMTYMTSTATNTGSASITVYFAQGTDPDMATVNTKNRVSE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  K  +     +   + +               +         ++       
Sbjct: 115 AEGLLPAEVTKVGVTVEKRQNSMVKIISLYSPDDSYDQNFINNYFKINVEPRLSRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P ++ Q     A +       N        G            
Sbjct: 175 NVNVMG-GDYAMRIWMNPQKMAQYQLVPADVIALLDDQNVEAATGTLGEDSENTFQYTLK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                    +    +                ++           
Sbjct: 234 YRGR----------------YETAEEFGNMVLKSLPTGEVLRLKDVADVELGSQSYAYNS 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        + S  A  + N  ++    L   +        +             S   
Sbjct: 278 EIVGHPGATCMISQTAGSNANEIVKEVDKLMEEISKDLPKGLVMADLMSTKDFLDASVHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V++  +   +  ++   SI ++++ T A L + G +L L ++  +V
Sbjct: 338 VVKTLIEAIILVVLVVYFFLQSVRSTIIPSVSIIVSLVGTFAFLYVAGFSLNLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++ +  +   S + +         + I  +++  +   +   F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQAKFDEGYRSPYKATVAAMDGISAAIVTTSLVFMAVFIPTSFM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------------I 523
           GG +      F +TM +++ IS   A+++  A+   I+     KS               
Sbjct: 458 GGTSGVFYTQFGLTMAVAVGISAINALTLSPALCALIMTPHMDKSTGGKLSFSSRFHHAF 517

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           + +         + ++    R     V ++ + ++    +  T       +  G I + V
Sbjct: 518 EASFNRLVLKYKNGVSFFLRRKWMAWVSLAAVCALLVFFMRTTKTGLVPDEDMGTIFVNV 577

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L+  R  +E +              N           +     ++++      
Sbjct: 578 TTPPGSSLAQTRKTMEMIDERIREIPQIKIYSNVTGYSMMGGQAASGGMLIIKLKHWDER 637

Query: 644 EIVPLSTIQNTEIVGPKISR 663
           +            +    + 
Sbjct: 638 QEAQDHINAIIAAIYQHTAD 657



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 94/249 (37%), Gaps = 6/249 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   +   +     + L  V       Q    + +         +  Q    ++    + 
Sbjct: 244 FGNMVLKSLPTGEVLRLKDVADVELGSQSYAYNSEIVGHPGATCMISQTAGSNANEIVKE 303

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
           ++ + ++I++ +P   +    +         + + +  +I + I +++ ++         
Sbjct: 304 VDKLMEEISKDLPKGLVMADLMSTKDFLDASVHEVVKTLIEAIILVVLVVYFFLQSVRST 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +    ++I+ +  T  F  + G   NL  + A++ +IG  V+D +VV + ++        
Sbjct: 364 IIPSVSIIVSLVGTFAFLYVAGFSLNLLTLFALVLVIGTVVDDAIVVVEAVQAKFDEGYR 423

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             S       +++      V TS+      +P +  GG+       F + MA  + ++A 
Sbjct: 424 --SPYKATVAAMDGISAAIVTTSLVFMAVFIPTSFMGGTSGVFYTQFGLTMAVAVGISAI 481

Query: 811 SSIFIAAPI 819
           +++ ++  +
Sbjct: 482 NALTLSPAL 490



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 6/152 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            LI   +    +  +  I  +   +  +  F   FG+E N+     ++ LIG      +++
Sbjct: 886  LILCSLYESIFIPMVVILAVPFGLMGSFLFAKCFGLENNIYMQTGLIMLIGLLSKTAILL 945

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +            +S       +    L   + T++   I + P+ V    G +   S 
Sbjct: 946  TE---YASARRRQGMSIAQAAVAAAGVRLRPILMTALTMIIGLFPLIVATGAGANGNRSL 1002

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +    G++V   + +F+   +         +
Sbjct: 1003 GVGTVGGMLVGTVALLFVVPVLFTVFQAIEER 1034


>gi|327188982|gb|EGE56171.1| putative multidrug efflux transporter protein [Rhizobium etli
           CNPAF512]
          Length = 1036

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 89/684 (13%), Positives = 186/684 (27%), Gaps = 39/684 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL           + ++P   P              +      
Sbjct: 7   RRPIFAWVIAITIMLAGLLAIF-----TLSISQYPDIAPTTVR---------INATYRGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + L        +       I L+F  S   +    +V   LQ 
Sbjct: 53  SAETVEKSVTTIIEDGMTGLDDLTYMTSTSSTGSASIQLTFGTSIDPDIAQVQVQNKLQL 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D     +  T      +++           +++    +     DQI   E   
Sbjct: 113 VQSQLPGDVIDAGISVTRSTSSILLVGSLVSTDGKRSSVDLGNLMSTSIEDQIQRLEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +   T + ++      N        G +          
Sbjct: 173 SINVFGSG-YAMRTWLDPYKLLKYQLTPSDVTAAIQAQNTQVSVGSLGAQPTIPGQQLNV 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++                     I   E             I           
Sbjct: 232 TITAQSQLT-------------TVADFEHIILKVEKDGATVRLSDVSRIEIGQESYGGSS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +    +     +   T         ++                      S   
Sbjct: 279 RYNGLPSSGFAVNLAIGANAIDTAARVRSALDVIGRTLPEGVKITYPYDTTPFVELSIEK 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +VL + +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 339 VVHTLIEAIVLVFVVLLVFLQNLRATLIPTIAVPVVLLGTFGVLAATGYSINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     + + S   + +         I    +      + + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERIMSEEKLSPLEATEKSMGEITGAIVGIALVLTAVFIPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFF 532
           GG      R F+IT+  ++L+S   AI +  A+   +        K       N      
Sbjct: 459 GGSTGIIYRQFSITIVSAMLLSALVAIVLTPALCATMLKPVSEHRKHRVGDWFNRNFTRS 518

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY--GIDFKGGIQLGVLANRPVD 590
                  I ++  R   V +  L        LFT   +     + +G +   V       
Sbjct: 519 TNGYVRTIGYLLKRPIRVMLVFLLVGAGCAYLFTRLPSSFLPQEDQGVLLTIVTTPPGST 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               ++ +E ++      +    E  F        G       V   +K       P  +
Sbjct: 579 TQQTQAVVEKVENYYRENEKDAVESVFGALGFGFNGSGQNSAIVFTKLKDFSQRTDPNLS 638

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
            Q+      +    +    +  ++
Sbjct: 639 AQSVVSRALRSFFAMREAQVFALL 662



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G  A  G   N   + A++  IG  V+D +VV + +     
Sbjct: 361 LRATLIPTIAVPVVLLGTFGVLAATGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERI 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S  +  +KS+ E  G  V  ++      +PMA +GGS       F+I +   ++
Sbjct: 419 MSEEKLSPLEATEKSMGEITGAIVGIALVLTAVFIPMAFFGGSTGIIYRQFSITIVSAML 478

Query: 807 VAASSSIFIAAPI 819
           ++A  +I +   +
Sbjct: 479 LSALVAIVLTPAL 491



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 66/169 (39%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   IS + + + +   ++ W      I  + + I   L    LFG   ++     +
Sbjct: 866  QAPMLYAISVLVVFLCLAALYESWSIPFSVIMAVPVGILGALAAATLFGQANDVYFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT IG +  + +++ +  +       + +   +   ++    L   + TS+A  + V+P+
Sbjct: 926  LTTIGLAAKNAILIVEFAKD---RMESGMGLYEATLEAARLRLRPIIMTSLAFILGVVPL 982

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+    G +   +  I +  G++ A    IF      + I    A   +
Sbjct: 983  AIATGAGSAAQNAIGIGVLGGMLAATMLGIFFVPSFFVVIRRIFATRGK 1031


>gi|154251416|ref|YP_001412240.1| acriflavin resistance protein [Parvibaculum lavamentivorans DS-1]
 gi|154155366|gb|ABS62583.1| acriflavin resistance protein [Parvibaculum lavamentivorans DS-1]
          Length = 1047

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 54/569 (9%), Positives = 164/569 (28%), Gaps = 37/569 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + V++ + +  +G +      +       FP                    VLE  
Sbjct: 9   RRPVFAVMIIAALVVLGWISLGRVGVDLFPKVEFPVVA--------------VTTVLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  + +        +  +  +++ + +  +   +  A  V   +  
Sbjct: 55  SPEAIESDVTDAIEEQVNTISGIETLSSTSAEGLSQVVIQYDLNENVDVKAQDVRDKVSL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               +  D +++++        +I+      D  I    + + +++++R   +       
Sbjct: 115 ARPNIPQDAEQSIVQKVDPDAQAIMSIMIAGDLPIRDLTQFADKVVKER---LQRISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    D  ++R        ++      +    G             +++
Sbjct: 172 SIELVGGRDREVRIWLDAVKMRAYGVAAEDVTSALRREHAEIPGGRLETP----GGMSEF 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ K E++ +                   +                 +   +       
Sbjct: 228 SVKTKGEVTSVA-------------DFRNILVAFRQDGAPTTIGDIARVEDGMEDERSYA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            ++  +              +   +                 GS   
Sbjct: 275 ELNGKRGVSLDLRKQSGRNTVEVARAVREELKEIEKLAPAGIEMKTARDTAVFIEGSADD 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   LV++V    +L  +  L+   ++  +++ T     +   T+ + ++  + 
Sbjct: 335 VFFDIQLGIVLVVLVTLAFLLSMRATLIVAVAMPTSLVATFFAFYVADFTINMMTLMALS 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E I  +  +      +   G       +  +  +     V + F  
Sbjct: 395 LAVGLLVDDAIVVLESIYRKLEEGLPPMQAASEGTKEVGLAVLAATFSICAVFVPIAFMD 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     + + +  S+L+S+  ++++   +   ++++ +    + N ++RFF      
Sbjct: 455 GVVGRFFFQYGLAITFSVLVSLLVSLTLTPMLSSRMLKHGETDPANYNRVARFFDDGYNR 514

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTH 567
             +F          +    +    L    
Sbjct: 515 LDRFYGRVLEWALGARWMVMVGAALTIVF 543



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 44/133 (33%), Gaps = 6/133 (4%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           +   + +L+ +         L     +   +  T   F +     N+  + A+   +G  
Sbjct: 341 LGIVLVVLVTLAFLLSMRATLIVAVAMPTSLVATFFAFYVADFTINMMTLMALSLAVGLL 400

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+D +VV + +    +     +       +   E     +  + +     +P+A   G V
Sbjct: 401 VDDAIVVLESI---YRKLEEGLPPMQAASEGTKEVGLAVLAATFSICAVFVPIAFMDGVV 457

Query: 794 IGSF---AIPMAF 803
              F    + + F
Sbjct: 458 GRFFFQYGLAITF 470



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 77/238 (32%), Gaps = 15/238 (6%)

Query: 580  QLGVLANRP--VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             + V +     +D++ V     +     I  QN       +           A   +   
Sbjct: 773  MIQVRSANGNLIDIANVARFDVAAGPAQIERQNRARRIAIVANNPEGAALGPASEEIETY 832

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGA 696
            ++          + +       +          +G       + +Y+ +  ++  FA  A
Sbjct: 833  LEDLKLPPGYSWSAEGRSKRMKETG------AAIGFAFLLALIALYMILASQFNSFAQPA 886

Query: 697  ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            I  L   ++    F AL   G E  + +  A+L L+G  + + +++ D       L    
Sbjct: 887  IIMLSAPLSFAGAFVALKISGQEMTMFSQIALLALMGLVMKNGILLVD---YTNHLREAG 943

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
               R+   K+    L   + T +A    ++P+A+        F   M   ++    SS
Sbjct: 944  AGPREAALKAGPVRLRPVLMTQIATVFGLIPVAMSNSQG-AEFRNAMGILVIGGLISS 1000


>gi|294635403|ref|ZP_06713895.1| multidrug resistance protein MdtC [Edwardsiella tarda ATCC 23685]
 gi|291091226|gb|EFE23787.1| multidrug resistance protein MdtC [Edwardsiella tarda ATCC 23685]
          Length = 1026

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 75/607 (12%), Positives = 165/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L      L    +   P       +             L    
Sbjct: 10  RPVATTLLALAITLAGVL-----GLRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R  +  A  V   L   
Sbjct: 56  PETMAASVATPLERALGRIAGINEMTSSSSLGNTRIILQFDLDRDIDGAARDVQGALNAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + +     +     +  E       +   +I   +    
Sbjct: 116 QSLLPSGMPSRPRYRKANPSDAPIAI-LTLTSTRYNQGELYDLASTRLAQKIAQIDGIGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  + DP  L     +   +       N  +                   
Sbjct: 175 VTVGGSSLPAVRIDLDPDALFNQGVSLDAVRQAIASANVRRPQG---------------- 218

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                           AN      +    +                 +   +  V +  +
Sbjct: 219 ----AVADAQQRWQLQANDALMQAQAYRPLIIHYRDGAAVRLQDVAQVSDDVEDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +    A  +   T++        LRA         + +        S    
Sbjct: 275 SNGEPAILIMIRRSADANIIETVDRLRQSLPALRAMLPAAVNLDIAQERTPTIRASLREV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + + AI  GLV++V+F+ +   +  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQSLAIAVGLVILVVFLFLRSTRATLIPAVTVPISLIGTCAAIYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E I            +  +G      T+F  +++ +   + L F GG
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGLRPRQAALVGVREVGFTVFAISLSLVAVFIPLLFMGG 454

Query: 483 GA---VRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
                   FA+T+ ++I +S+  A+++   M   +         +    +          
Sbjct: 455 VPGRLFHEFAVTLSVAIALSLLIALTLTPMMCARLLRVTTTHSTRPAGVLGRLLARLRQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +      AR+  + +  +  +     +      +     G +   + A++ +    
Sbjct: 515 YASSLNWTLDHARWVLLLLLAVIGLNIGLYIAIPKAFFPQQDTGRLMGFIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +  + +++++++R      L    T+ + +  T     L G   N  ++ A+    
Sbjct: 338 LAIAVGLVILVVFLFLR-STRATLIPAVTVPISLIGTCAAIYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +     +  R      + E        S++     +P+   G
Sbjct: 397 GFVVDDAIVVLENI---ARHIENGLRPRQAALVGVREVGFTVFAISLSLVAVFIPLLFMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G        FA+ ++  I ++   ++ +  
Sbjct: 454 GVPGRLFHEFAVTLSVAIALSLLIALTLTP 483



 Score = 42.0 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 80/196 (40%), Gaps = 6/196 (3%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
                  +++ +T +    +++ +      + ++     +  ++ +   + I + I ++ +
Sbjct: 815  AEASRAIERAMTALGTPPSLRGSFAGTALLFQQAQSSQLWLILAAIATVYIVLGILYESY 874

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  ++TL       L    LF   F+L A+  +L LIG    + +++ D        
Sbjct: 875  IHPLTILSTLPSAGVGALLALMLFQAPFSLIALIGILLLIGLVKKNAILLVD--FALTAQ 932

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                +S R  I ++        + T++AA    LP+A     G  +     I +  G++V
Sbjct: 933  REQGLSERAAIHQACLLRFRPIMMTTLAALFGALPLAFSYGDGAELRQPLGITIVGGLLV 992

Query: 808  AASSSIFIAAPILLFI 823
            + + +++    + L++
Sbjct: 993  SQALTLYTTPVVYLYM 1008


>gi|319789795|ref|YP_004151428.1| protein-export membrane protein SecD [Thermovibrio ammonificans
           HB-1]
 gi|317114297|gb|ADU96787.1| protein-export membrane protein SecD [Thermovibrio ammonificans
           HB-1]
          Length = 556

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 142/474 (29%), Positives = 240/474 (50%), Gaps = 35/474 (7%)

Query: 51  RGGSHLVLEVDEDDFVNG---FLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSR 106
           R G+ L L +             +   + +R+ + + G+    + +   ++I +     +
Sbjct: 110 RNGNRLTLSLKPSYVSKEIDRLAEQALETIRNRIDQLGVAEPVIVRNGKDRIIVELPGVK 169

Query: 107 FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
             E     +         +        ++         IV     +    S  +E S   
Sbjct: 170 NPERAKKIIGKVANLEFKE--------VVAEFRSPNQMIVNLGGKVPPGASVEVEPSPTG 221

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
            +  + + G  E    +                  +++  G   +     +    +K+G 
Sbjct: 222 PKFFLVEEGRKEPIKVKNLE-------------ELVKKFGGNVPEDEQLLLQEIKNKEGR 268

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
           +           N +LV+ +  ++G +L  A  + D       V    +  GA+ F   T
Sbjct: 269 VVAY--------NFFLVKREPILTGAYLKDAYPSQDENGLPA-VSFVLNSQGAKIFRNYT 319

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
           + +IG  LA+VLD +V +APVI       + QISG FT + A  LA +LRAG+LP  + I
Sbjct: 320 KHHIGTRLAIVLDNKVQSAPVIRSE-IGARGQISGQFTYQEARDLAIVLRAGALPAPVKI 378

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           VEE  VG  LG +S+ KG  A VAG+++++LFM+V Y   G+ AD ++ +NVI+  AL++
Sbjct: 379 VEETTVGPSLGKESVEKGIKAGVAGIIVVMLFMLVYYKTAGIAADAALLMNVIILWALMA 438

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           L+GATLTLP IAG +L IG++VD+N+++ ERI+EE RK ++++ +++ GF+RA+ TI DS
Sbjct: 439 LIGATLTLPGIAGFILTIGMSVDANVIIFERIKEELRKGRNLYSAVEAGFARAWGTILDS 498

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           N+T LIA  VLF FG G ++GFA+T+ L I+ SMFTA+ + + ++  I++YK  
Sbjct: 499 NVTTLIAAAVLFQFGTGPIKGFAVTLSLGIMTSMFTAVFVTKVLLDLIVKYKPK 552



 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 86/179 (48%), Gaps = 4/179 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             VGP + +E + KGI   +   I +++++ + +K    + A   L++++       AL 
Sbjct: 382 TTVGPSLGKESVEKGIKAGVAGIIVVMLFMLVYYK-TAGIAADAALLMNVIILWALMALI 440

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A  +  IG SV+  V++++R+++ ++      +    ++       G  + 
Sbjct: 441 GATLTLPGIAGFILTIGMSVDANVIIFERIKEELR---KGRNLYSAVEAGFARAWGTILD 497

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +++   I+   +  +G   I  FA+ ++ GI+ +  +++F+   +L  I  ++ K  +I
Sbjct: 498 SNVTTLIAAAVLFQFGTGPIKGFAVTLSLGIMTSMFTAVFVTKVLLDLIVKYKPKLFKI 556



 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 106/244 (43%), Gaps = 28/244 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+N  W V+    +    L +AL                    I+LGLDL+GG+HLVL++
Sbjct: 1   MKNLKWKVLFILAVLVGSLYVAL-----------------TKPINLGLDLKGGTHLVLQI 43

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +    +   +     +++  L++E + V S  +    I +    +   +   + +     
Sbjct: 44  ETQKALENEVSAALRDIKRSLEEENLPVVSAVRKGTTIEIEMLTADAAQKAQELIKEDYG 103

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + +           +      +++ L  + + + I    EQ++E IR RIDQ+G++E  
Sbjct: 104 RMFA-----------IKRNGNRLTLSLKPSYVSKEIDRLAEQALETIRNRIDQLGVAEPV 152

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           I R G  RI+++LPG ++P R ++++G  A + F +V+        M      +   G  
Sbjct: 153 IVRNGKDRIIVELPGVKNPERAKKIIGKVANLEFKEVVAEFRSPNQMIVNLGGKVPPGAS 212

Query: 241 YLVE 244
             VE
Sbjct: 213 VEVE 216


>gi|254786179|ref|YP_003073608.1| OqxB [Teredinibacter turnerae T7901]
 gi|237684612|gb|ACR11876.1| OqxB [Teredinibacter turnerae T7901]
          Length = 1059

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 69/666 (10%), Positives = 171/666 (25%), Gaps = 35/666 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL        Q  +  +P   P + +          +       
Sbjct: 10  RPIFAGVISLLIFISGLLAVF-----QLPISEYPEVAPPSVV---------VNASFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  S ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVARPLEEQMSGVENMIYMFSQATTDGQMMLTVTFKIGTDPDLAQQMVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  +  T       ++            +      +    D++       
Sbjct: 116 ALPRLPEVTRQVGVTVTKSSPNLTMVVHLTSPDQRYDDLFLRNYAVLSVKDELAKLTGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P ++ +   T+  +       N      + G   +  +   Q 
Sbjct: 176 MVRLFGSGDYAMRIWLNPDKIAEYNLTSTDVVNAIREQNVQVAAGIIGGAPVSSAIEVQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +    I                 I    +      
Sbjct: 236 PINAKGRL-------------ETPEEFGSIIIKAGQHGEITRLRDVARIELGASDFGLNA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +         GS   
Sbjct: 283 LLDNKPAVAIPIFQAPGANAIQISDQVRATMKRLSEDFPAGMSYELVYDPTVFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++++ T AL+ + G ++   S+ G+V
Sbjct: 343 VVHTLFEALLLVVIVVVVFLQTWRASIIPLLAVPVSIVGTFALMHVFGFSINTLSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +     +      +           I   ++T +   V + F  
Sbjct: 403 LSIGIVVDDAIVVVENVERNIEEGLHPIQATYKAMQEVSGPIIAISLTLVAVFVPIAFVS 462

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G   + +        + ++ +A++   ++ +       +      P        + +   
Sbjct: 463 GLTGQFYKQFALTIAISTVISAVN---SLTLSPALSALLLKDRDAPKDLLTRGMEKVFGP 519

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
           F R      G S      S+  L          + G + +         +S+ +  +   
Sbjct: 520 FFRGFNRVFGASSNGYGRSVQHLLGRKTIMMAIYAGFLAIT----CWEFISIPKGFVPPQ 575

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               +       +   L R +    D  A     E V   +                  +
Sbjct: 576 DKQYLIAFAILPDGATLERTRQVIEDMGAIGLEEEGVANAVQFPGLSINGFVNSSSAGIV 635

Query: 662 SRELIR 667
              L  
Sbjct: 636 FFPLTD 641



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 71/228 (31%), Gaps = 12/228 (5%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
               ++   L        A        +  I+EI+              ++ + +  G   
Sbjct: 822  SATHYNGYLAADLNGDAAPGYSSGQAQDAISEILDEVLPPGISYEWTDLTYQQVLSGNTA 881

Query: 673  VIIS---AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            + I     I + + +  +++     L  I  + L I   L    + G + N+    ++  
Sbjct: 882  IFIFPLCLILVFLVLAAQYESVVLPLAVILVVPLSILAALAGVFISGGDNNVFTQVSLFV 941

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L G +  + +++ +  R+   L    +        +    L   + TS A  + V+PM V
Sbjct: 942  LAGLACKNAILIVEFARE---LEMEGMPTLKAAITASRLRLRPILMTSFAFIMGVVPM-V 997

Query: 789  WGGSVIGSFAIPMAFGIVVAASSS----IFIAAPILLFIYDWRAKNAR 832
            +         + M   +           +F      + +     K  +
Sbjct: 998  FSTGAGAEMRVVMGIAVFSGMLGVTAFGLFFTPIFYVLLRTLEKKFQK 1045



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 55/128 (42%), Gaps = 8/128 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 365 WRASIIPLLAVPVSIVGTFALMHVFGFSINTLSLFGLVLSIGIVVDDAIVVVENVERNIE 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGI 805
                        K++ E  G  +  S+   ++V     +     G     FA+ +A   
Sbjct: 425 EGLH---PIQATYKAMQEVSGPIIAISLT-LVAVFVPIAFVSGLTGQFYKQFALTIAIST 480

Query: 806 VVAASSSI 813
           V++A +S+
Sbjct: 481 VISAVNSL 488


>gi|304414860|ref|ZP_07395778.1| inner membrane component of AcrAB-TolC multidrug efflux pump
           [Candidatus Regiella insecticola LSR1]
 gi|304283129|gb|EFL91543.1| inner membrane component of AcrAB-TolC multidrug efflux pump
           [Candidatus Regiella insecticola LSR1]
          Length = 1058

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/568 (11%), Positives = 149/568 (26%), Gaps = 62/568 (10%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  MI  +G    +        + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIMIMLVGSAAIM-----ILPIAQYPTVAPPT-------------ISISANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      +I+L+F      +    +V  
Sbjct: 50  QGADAATVQNTVTQVIEQKMNGIDNLLYLSSSSDYSGNVEISLTFKPGTDPDVAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L    ++  +      +  ++      +       E +  I     D I   
Sbjct: 110 KLQLAMPLLPQQVQQQGVEVEKSSDAYLMFPSFVSEDGSMQQEEIADYIATNIKDPISRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP++L +   T  ++       N+       G        
Sbjct: 170 SGVGDAPLFGAQ-NAMRIWMDPNKLNRFKLTPVEVIHAIRAQNDQVAVGQLGATPAVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 QLNASIISQTRLTSAE-------------EFNQILLKINPDGSQVRLKDIATVELGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T          L+    P    +           
Sbjct: 276 NMIIRYNGKPATSLGIKLATGANALKTAAAVKEELDKLQQFFPPGLKVVHPYDTTPFVKT 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF----------------SIFLNVILT 401
           S      T      LV +V+++ +   +  L+                   ++ + ++ T
Sbjct: 336 SIKGVVTTLVEAIILVFLVMYLFLQNFRATLIPTIAVPIVLXXXXXXXXXXAVPIVLLGT 395

Query: 402 LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAY 460
            A+L   G ++   ++ GIVL IGL VD  I+V E +      +  S   +      +  
Sbjct: 396 FAILYAFGYSINTLTMFGIVLAIGLLVDDAIVVVENVERVMQEEGLSPKAATKKAMGQIQ 455

Query: 461 STIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
             +    +      + + FF G      R F+IT+  ++++S+  A+ +  A+       
Sbjct: 456 GALVGITLVLSAVFIPMAFFEGATGVIYRQFSITIVSAMVLSVIVALILTPALCAT---- 511

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRA 545
             +K I                  F +A
Sbjct: 512 -MLKPIAKGSHHSVKGFFGWFNRLFAKA 538



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 86/251 (34%), Gaps = 8/251 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V +N    +     +    + G    + ++G  +  +  Q  PG S  +   L       
Sbjct: 804  VRSNTDKMVPFSAFSSAKWEQGSPRLERYNGRPSMQILGQAAPGKSTGEAMDLMQYLAAK 863

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                             +   +      + +++  + +     +   W      I  + +
Sbjct: 864  LPAGIGYEWSGMSYQERQSGNQATMLYAISLMVVFLCLA---ALYESWSIPFAVILVVPV 920

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I  TL    L G++ ++     +LT IG S  + +++ +  ++ M+         +   
Sbjct: 921  GILGTLLATFLRGLDNDVYFQVGLLTTIGLSAKNAILIVEFAKELMEKENKG--LIEATL 978

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +++   L   + TS+A  + V P+ +    G     +    +  G++ A   +IF     
Sbjct: 979  EAVRMRLRPILMTSLAFILGVTPLVISSGAGSGAQNAVGTGVMGGMIAATVLAIFFIPLF 1038

Query: 820  LLFIYDWRAKN 830
             + +    +K+
Sbjct: 1039 FVMVRRHFSKH 1049



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 85/254 (33%), Gaps = 20/254 (7%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V       + +   +   +   +       G K  L         + A    L+ +++ 
Sbjct: 259 QVRLKDIATVELGAESYNMIIRYNGKPATSLGIK--LATGANALKTAAAVKEELDKLQQF 316

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI---- 697
               + +    +T        + ++   +  +I+  + M +++           A+    
Sbjct: 317 FPPGLKVVHPYDTTPFVKTSIKGVVTTLVEAIILVFLVMYLFLQNFRATLIPTIAVPIVL 376

Query: 698 ---------TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                      + + +  T      FG   N   +  ++  IG  V+D +VV + +    
Sbjct: 377 XXXXXXXXXXAVPIVLLGTFAILYAFGYSINTLTMFGIVLAIGLLVDDAIVVVENV--ER 434

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S +    K++ +  G  V  ++      +PMA + G+       F+I +   +
Sbjct: 435 VMQEEGLSPKAATKKAMGQIQGALVGITLVLSAVFIPMAFFEGATGVIYRQFSITIVSAM 494

Query: 806 VVAASSSIFIAAPI 819
           V++   ++ +   +
Sbjct: 495 VLSVIVALILTPAL 508


>gi|221134904|ref|ZP_03561207.1| RND family efflux transporter [Glaciecola sp. HTCC2999]
          Length = 1036

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 59/536 (11%), Positives = 153/536 (28%), Gaps = 38/536 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++   G++           L  +P   P                     
Sbjct: 9   KRPVFASVVNLLLIVFGVVAI-----SLLSLREYPDIDPPIV---------SVSTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S    +++I++ F  SR  +  ++ V   +  
Sbjct: 55  SAAIIETRITQLLEDRISGIEGIKNISSSSSNGRSRISIEFNLSRDIDAASNDVRERISR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L        +  +   E  IV        +    +E +    R  +DQ+ I +   
Sbjct: 115 ALNNLPDQAFPPEVSKSGSDEDVIVWYNLRSTNL--SVMELTDYADRFIVDQLSIVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D   +     T A +       N           +         
Sbjct: 173 RVRLGGGRSYAMKVWLDKDAMAARGVTVADVERVIRSENVELPAGRVESSYRDFEVRVTR 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                              +            +           
Sbjct: 233 SFLTP-------------------DDFARLTVKSNLDGYLVRLSEVARVELAAEDDETEF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +++ +     + A    A +          +    +      S + 
Sbjct: 274 RGDGVNMIGLGIVKQSKSNTLEVAKNAKKAIAQISQTLPDNIFIVPSYDSSIFIEESINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   +V++V+++ +   +  ++   ++ ++++    ++  LG ++ L ++  +V
Sbjct: 334 VYNTLAIAMFMVVVVIYIFLGNVRATIIPAITVPVSLVSAFIVMYALGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +   G       +  + +  +   V L F  
Sbjct: 394 LAIGLVVDDAIVVLENIYRRIEMGEPPLLASYRGAREVGFAVIATTLVLISVFVPLVFLE 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           G        FA+ +  ++  S FTA+++   +  +++  +   S   + +   F  
Sbjct: 454 GNIGSLFTEFALAIAAAVAFSSFTALTLSPMLSSYLLTKRSRSSGFGSWVEGAFKR 509



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +     + +  +F+ W   L  + T+ L +        L G+  N+ +   ++ LIG + 
Sbjct: 859  ALAVTYLVLAAQFESWIHPLVIMFTVPLALVGAFIGLYLNGMSLNIYSQIGLVMLIGLAA 918

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
             + +++ +      +L    + F++ +  +  + L   V T      S LP+ +    G 
Sbjct: 919  KNGILIVEF---TNQLRDAGMEFKEALCTASTQRLRPIVMTGFTTVFSALPLVLAVGPGS 975

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                   + +  G++ +   ++F+   +   +  
Sbjct: 976  ESRAVIGMVIFAGVLFSTFLTLFVIPTMYHVLAR 1009



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 90/267 (33%), Gaps = 12/267 (4%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           +      +L V +N    L  +          +     F G+   ++ L           
Sbjct: 235 LTPDDFARLTVKSNLDGYLVRLSEVARVELAAEDDETEFRGDGVNMIGLGIVKQSKSNTL 294

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIR 687
            V +  KK I +I          +     S  +          + + +  + ++IYI   
Sbjct: 295 EVAKNAKKAIAQISQTLPDNIFIVPSYDSSIFIEESINEVYNTLAIAMFMVVVVIYI-FL 353

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 +    T+ + +          G   NL  + A++  IG  V+D +VV + +   
Sbjct: 354 GNVRATIIPAITVPVSLVSAFIVMYALGFSINLLTLLALVLAIGLVVDDAIVVLENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +             +   E     + T++      +P+       GS+   FA+ +A  
Sbjct: 411 YRRIEMGEPPLLASYRGAREVGFAVIATTLVLISVFVPLVFLEGNIGSLFTEFALAIAAA 470

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  ++ +++ ++  +  ++   R++++
Sbjct: 471 VAFSSFTALTLSPMLSSYLLTKRSRSS 497


>gi|256425062|ref|YP_003125715.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
 gi|256039970|gb|ACU63514.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
          Length = 1058

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 71/563 (12%), Positives = 162/563 (28%), Gaps = 44/563 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L  ++  +GL+      L +  + +FP   P               +V+   
Sbjct: 7   QRPVLATVLSVILVILGLV-----GLSRLPVTQFPDIAPP-------------SVVVTAT 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   + +     +   +   E +         +    I++ F      +  A  V 
Sbjct: 49  FPGGNAATVLRSVVTPIEEAVNGVENMTYIQSTASNDGTATISVFFKLGTDPDQAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-VISHAIEQSMEIIRQRIDQIG 175
             +  V S+L  +  +  + TT ++   I++     +     +            + ++ 
Sbjct: 109 NRVAQVTSQLPAEVVQAGVATTKQQNGMIMVLDLFSENKATYNETFLQNYTKINVVPELK 168

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 Q          +    DP++L     T+ ++       +       FG      
Sbjct: 169 RIPGVGQVQIFGAKDYSMRIWLDPAQLSAHNVTSTEVLNAIQDQSLEAAPGKFGEGSHEP 228

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                                       K  +    +          +      I    A
Sbjct: 229 LS----------------YVINYTGKFNKQEQFENIVVRAGTDGSVLYLKDLARIELGAA 272

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  L                + N        +     A         V        
Sbjct: 273 NYTTDNKLNGKDAVTMAVFQTNGSNANAIQLAVEAVMKKAAASFPKGIKYHVTMSTKEQL 332

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    K T      LV +++F+ +   +  L+   ++ ++++ T   L +LG ++ + 
Sbjct: 333 DVSIEQVKHTLIEAFILVFVIVFIFLQDFRSTLIPAIAVPVSLVGTFFFLQMLGFSINML 392

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITAL 471
           ++  +VL IG+ VD  I+V E +  +  ++     +         S A  +I        
Sbjct: 393 TLFALVLAIGIVVDDAIVVVEAVHGKMERSHLSARAATVSALSEISGAIVSITLVMTAVF 452

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           +    +    G   R FA T+ ++ILIS F A+++  A+   I++       +     + 
Sbjct: 453 LPVGFMEGPTGVFYRQFAFTLAIAILISAFNALTLSPALCALILKNNHANGHEKKGFGKR 512

Query: 532 FLIPDCIAIQFMRARFWGVGISI 554
           F          +  ++     S+
Sbjct: 513 FFAAFNTGFNAVTNKYTRGVKSL 535



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                   +    +   +   Q    ++ A    +E V KK     P     +  +   +
Sbjct: 271 AANYTTDNKLNGKDAVTMAVFQTNGSNANAIQLAVEAVMKKAAASFPKGIKYHVTMSTKE 330

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFN 719
                I +    +I + I + + ++I    +   L     + + +  T  F  + G   N
Sbjct: 331 QLDVSIEQVKHTLIEAFILVFVIVFIFLQDFRSTLIPAIAVPVSLVGTFFFLQMLGFSIN 390

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           +  + A++  IG  V+D +VV + +    K+  + +S R     +++E  G  V  ++  
Sbjct: 391 MLTLFALVLAIGIVVDDAIVVVEAVH--GKMERSHLSARAATVSALSEISGAIVSITLVM 448

Query: 780 FISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
               LP+    G        FA  +A  I+++A +++ ++  +
Sbjct: 449 TAVFLPVGFMEGPTGVFYRQFAFTLAIAILISAFNALTLSPAL 491



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 82/251 (32%), Gaps = 16/251 (6%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V ++ +           ++  N     +     +       A   V ++   K+     
Sbjct: 797  MVPVNSIIKLKRVYGPETMNRYNLYNSISVNAIPKPGYSTGDAINAVEKLAASKLPAG-- 854

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDI 704
                 + E  G     +L    +V +I +   + +Y  +      +   L  + ++   I
Sbjct: 855  ----YSFEWTGLSREEKLSGNQMV-IIFALALVFVYFLLAAQYESYILPLAVLLSIPTGI 909

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
                      GI+ N+     ++ LIG    + +++ +     ++      +      ++
Sbjct: 910  LGVFLAIRAVGIDNNIYVQVGLVMLIGLLAKNAILIVEFA---VQRRKGGKTLVAAAIEA 966

Query: 765  INETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + TS+A    +LP+    G       S +I  A G++      +FI   + +
Sbjct: 967  AKLRLRPIIMTSLAFVAGLLPLMTVKGPSAEGNHSISISTAGGMLTGVILGVFIIPVLFV 1026

Query: 822  FIYDWRAKNAR 832
                 + K +R
Sbjct: 1027 VFQYLQEKVSR 1037


>gi|241205519|ref|YP_002976615.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859409|gb|ACS57076.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 1051

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 65/634 (10%), Positives = 164/634 (25%), Gaps = 43/634 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++  +++   GL            +   P                      +  
Sbjct: 23  RRPILALVFNTLMVVAGLAA-----YVGVEVRELPDVDRPVVT---------VRTTFDGA 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  L    +   + +        +    Q+++TL F+D+      A+ V   +  
Sbjct: 69  SPQTIDQELTKVIEGAVARVSGLKSISSTSSFGQSRVTLEFSDAIDLSVAANDVRDAIGR 128

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +V       +I+        +     + +  +  + ID++   +   
Sbjct: 129 ITQNLPDEADAPQIVKADSDSSAIMRLAVTSTNLNMD--DLTQLVENEVIDRLASVDGVA 186

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D   L     T   ++                            
Sbjct: 187 DVEEYGDQEKVFRVDVDQGALASRGLTIGDLTKALDNAALDVPAGSLKSNTQDIVVRATA 246

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + S + L                          R        +           
Sbjct: 247 NLQTPADFSNVILQD------------------------RVRLGDVATVMLGPRDGETAL 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +              L           +   +     G+   
Sbjct: 283 RSNGKPGIGLGIIRQAQSNTLNISTGIKAAVDQLSKTLPEGTTIAITSDDAVFIQGAIHE 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + A +V  V+++ +   +  L+   S+ + +I TLA + ++G ++ + ++  IV
Sbjct: 343 VVLALILAAVIVTAVIYLFLRDWRATLIPAVSMPVALIGTLAAIYMVGFSINILTLLAIV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  +  T     + L F  
Sbjct: 403 LATGLVVDDAIVVLENIVRRRSEGMGPRAAAVLGTREVFFAVIATTATLAAVFIPLSFLP 462

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F   +  S+ +S   A+++   +   ++    ++   +       L     
Sbjct: 463 GQVGGLFREFGFVLAFSVGLSSIVALTLCPMLASRMLTKPMLEDHGVLGRFGGALADLYK 522

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      V I          L+    +   +  +    + ++       S +    
Sbjct: 523 WALHGCLNAPFVVILFSVIFAGAALIAFSTVKSELTPEEDRSMVMMRLTTPQGSSLEYTR 582

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           + +Q+ +   Q      +               +
Sbjct: 583 DKMQLVEEYLQPLVDRGDIRNVFSISGQGGSLNS 616



 Score = 85.5 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 95/248 (38%), Gaps = 7/248 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+    V L  V + +   + G+ + ++       L  ++    +++  +  ++    ++
Sbjct: 257 VILQDRVRLGDVATVMLGPRDGETALRSNGKPGIGLGIIRQAQSNTLNISTGIKAAVDQL 316

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLI 701
           ++ +P  T            +  I + ++ +I++A+ +   I      W   L    ++ 
Sbjct: 317 SKTLPEGTTIAITSDDAVFIQGAIHEVVLALILAAVIVTAVIYLFLRDWRATLIPAVSMP 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  TL    + G   N+  + A++   G  V+D +VV + +   ++  +  +  R   
Sbjct: 377 VALIGTLAAIYMVGFSINILTLLAIVLATGLVVDDAIVVLENI---VRRRSEGMGPRAAA 433

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
                E     + T+       +P++   G V      F   +AF + +++  ++ +   
Sbjct: 434 VLGTREVFFAVIATTATLAAVFIPLSFLPGQVGGLFREFGFVLAFSVGLSSIVALTLCPM 493

Query: 819 ILLFIYDW 826
           +   +   
Sbjct: 494 LASRMLTK 501



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
              + + + + +  +F+   +   I    + +      FAL   G   N+ +   ++ L+G
Sbjct: 864  GFAIVIIFLVLAAQFESVLS-SLIIMSTVPLGLACAVFALVITGSSLNIYSQIGLVLLVG 922

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ +      +L       R  ++K+    L   + T +A  +  +P+     
Sbjct: 923  VMAKNGILIVEFAN---QLRDRGEDVRSSLEKACALRLRPVMMTMIATILGGVPLVFAHG 979

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G     +    +  G+  A   ++FI     L +  +   +A
Sbjct: 980  AGAEARVALGWVIVGGLGFATLVTLFITPVAYLLLARFAKPHA 1022


>gi|308049841|ref|YP_003913407.1| protein-export membrane protein SecF [Ferrimonas balearica DSM
           9799]
 gi|307632031|gb|ADN76333.1| protein-export membrane protein SecF [Ferrimonas balearica DSM
           9799]
          Length = 300

 Score =  165 bits (416), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 82/278 (29%), Positives = 140/278 (50%), Gaps = 5/278 (1%)

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
               R+     SIL ++ ++  L   GLN+G+DF GG+   V  +       + S LE  
Sbjct: 8   MTHWRYLTAAFSILLTVAALLALGIRGLNWGMDFTGGVITEVKMDAQYSGLDLTSRLEQG 67

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               +S         +L+R       + +    L +    + +I P   +  + +VG ++
Sbjct: 68  LGQTVSLVQAGEPGRWLIRTGPVDPQASSDVTALSV----LQQIDPDVQLIASSVVGAQV 123

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
            +EL   G V V+ S +A+L Y+W RF+W  A GA+  L+ D+   LG FA+  +EFNLT
Sbjct: 124 GQELAETGGVAVLFSMLAILFYLWYRFEWRLASGALLALLHDVIMVLGLFAVTQMEFNLT 183

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            +AAVL ++GYS+ND +V+ DR+R+ + L         + D ++ +T  R++ TS     
Sbjct: 184 VLAAVLAVVGYSLNDSIVLSDRIRE-LLLAKPDWLLAKINDTAVKQTFARTMVTSGTTLT 242

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +V  + ++ G+ +  FAI +  GI+    SSI I   +
Sbjct: 243 TVAAVWIFAGASLHGFAIALFVGIISGTWSSIAIGTVL 280


>gi|297580281|ref|ZP_06942208.1| protein-export membrane protein SecF [Vibrio cholerae RC385]
 gi|297535927|gb|EFH74761.1| protein-export membrane protein SecF [Vibrio cholerae RC385]
          Length = 300

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 144/279 (51%), Gaps = 6/279 (2%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R+    IS+L  + S+      GLN G+DF GG+    + N  V  S +   L+ +    
Sbjct: 13  RYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGES 72

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           +S      E  +++R         A+      +  ++  I     I +  +VG ++ +EL
Sbjct: 73  VSATPSGEEGCWVIRYPL-----AAEDATPVDIATELHHISDQVQIVSNSMVGSQVGQEL 127

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           I +G + ++I  +++L Y+  RF+W  A GA+  L+ D+   LGFFA+  +EFNLT  AA
Sbjct: 128 IDQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAA 187

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           VL ++GYS+ND +++ DR+R+ + L        D+ D++I  T  R++ TS    +++  
Sbjct: 188 VLAVLGYSLNDSIIISDRIRE-LLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISA 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + GG+ +  FAI M  GI+    SSI I   +  ++ 
Sbjct: 247 LWLMGGAPLQGFAIAMFIGIISGTWSSISIGTVLPEWLG 285


>gi|296535560|ref|ZP_06897741.1| RND efflux system [Roseomonas cervicalis ATCC 49957]
 gi|296264076|gb|EFH10520.1| RND efflux system [Roseomonas cervicalis ATCC 49957]
          Length = 1045

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 68/521 (13%), Positives = 152/521 (29%), Gaps = 32/521 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      +    + ++P  +P   +                 +
Sbjct: 9   RPVLAGVLSIAIVLAGLVA-----MRGLPVAQYPEIVPPQVV---------VSTTYSGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V+  +    +   + ++               + LSF      +     V+  +QGV
Sbjct: 55  ADTVSQTVAAPLERAINGVEGMIYMQSVNTDGSMTLNLSFEIGTDPDQATINVSNRVQGV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  + ++  +    +    + +            I  S   +R  ID+I        
Sbjct: 115 LATLPGEVQRVGVTVNKQSTAFLAVVSLTATDERFDEIFLSNYALRNVIDEIKRVPGVGN 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +    +     P  L Q   T + +S      N                    Y 
Sbjct: 175 AALFGQKEYAMRVWLRPDALAQFSLTASDVSAAIREQNQQFAAGKLNEAPGTGG-AYTYA 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  +  +             P        I                 +            
Sbjct: 234 MTAQGRL-------------PDAEAFGNIILQARPDGSTLRLRDVARVELGAQQYDFTGS 280

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L            +   +   T+         L A         +          S    
Sbjct: 281 LNGKPSAPFGIYLQPGANALQTMAAVTARMDELAAAMPRGMEYTIPYNTTAFVKVSIRQV 340

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV++V+F+ +   +  ++   +I +++I T A +  LG ++ + ++ G++L
Sbjct: 341 IMTFLEALALVVVVVFLFLQNWRATVIPLLAIPVSIIGTFAGMYALGFSINMVTLFGMIL 400

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +  S   +           +    +      + + F G
Sbjct: 401 AIGIVVDDAIVVVENVERLMTEEGLSPRAASIKAMQEVTGPVIAIVLVLCAVFIPVGFLG 460

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           G +    + FAIT+ +S+++S   A+++  A+   +++   
Sbjct: 461 GLSGQLYKQFAITISVSVILSGVVALTLTPALCAVMLKPGH 501



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/162 (11%), Positives = 58/162 (35%), Gaps = 7/162 (4%)

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               + + + +  ++ +W   +  +  +   +   L    L G+  ++     ++TL+G +
Sbjct: 873  FGVVMVFLILAAQYGRWTLPVAVLLAVPFGLFGALLAVWLRGLSNDIYFQVGLITLVGLA 932

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ +      +      S  D    +        + TS+A  +  +P+A+    G
Sbjct: 933  AKNAILIVEFAVLERRA---GKSPFDAALAAARLRFRPIIMTSLAFILGCVPLAISTGAG 989

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 S    +  G++ A   ++F+      +         +
Sbjct: 990  SGSRVSIGTAVVGGMLAATFLAVFLIPLFYTWFAGKAGPLPK 1031


>gi|296272353|ref|YP_003654984.1| hydrophobe/amphiphile efflux transporter [Arcobacter nitrofigilis
           DSM 7299]
 gi|296096527|gb|ADG92477.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Arcobacter nitrofigilis DSM 7299]
          Length = 1045

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 74/614 (12%), Positives = 180/614 (29%), Gaps = 33/614 (5%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
              ++++P   P   I+                    +   +    +E  + L       
Sbjct: 30  NLPVEQYPDIAPPT-IN--------IQATYAGATAKTIENSITQLIEEELTGLDGLLYFS 80

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            + +   + I + F      +    KV   +Q V  +L  D +K  +     ++  +++ 
Sbjct: 81  STSQTGSSSINVVFEKGVDPDIAQVKVNNKIQQVLPRLPEDVRKEGVSVVKSQDDFLMIL 140

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
             + +   S   + S  +I    D +                  +    DP +L+     
Sbjct: 141 SIHDESGKSSENDISDYLITNIKDGLSRINGVGGVELFGS-EYAMRVWIDPKKLKSYNLM 199

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
            + ++   +  N        G R           V  + ++                 + 
Sbjct: 200 PSDINNAILKQNAQVSAGSIGARPQVKGQELNADVVSRSKLENA-------------KEF 246

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
              +                 +                  +       +  +     +  
Sbjct: 247 ENIVIKSNKNGADVLLKDVAKVVLGSNDYSFISKNNGYQASGIGVKLSSGANAVDVAKRV 306

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
               +          +             S      T      LV++V+F+ +   +  +
Sbjct: 307 REYLSSFENSLPSGYIISYPYDTTIFIEESIKEVVKTLFEAVFLVVVVMFVFLNSWRATI 366

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN--Q 446
           +   ++ + ++ T A+L+ LG T+   ++  +VL IGL VD  I+V E +    R+    
Sbjct: 367 IPAIAVPVVLLGTFAILNFLGFTINSLTMFAMVLSIGLLVDDAIVVVENVERNMREKKLC 426

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG--AVRGFAITMGLSILISMFTAI 504
           +   ++        + I  + + +++   ++FF G      + FA+T+  S+++S+  A+
Sbjct: 427 AKEATIIAMDEITSALIGVATVLSVVFLPMIFFTGSTGIIYKQFAVTIISSMVLSVVVAL 486

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           ++  A+    ++         + L  F      +  ++    F  +   +   +  I ++
Sbjct: 487 TLSPAICATFLKPHNPNKKSNDVLDWFNRKFTNLTKKYKSGIFKFINAPMRSLVAYIAII 546

Query: 565 FTHGLNYGIDFKGGIQLG------VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
               L +     G I         +    P   S  RS      I D          N +
Sbjct: 547 AVSILFFIKLPTGFISPEDQGDLMIQFTLPAGASTTRSENTEKIIRDYFLTEEKSNINSI 606

Query: 619 VRLQYQPGDSVAQT 632
             +         Q 
Sbjct: 607 FSIVGFTFSGNGQN 620



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 5/147 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +     + + +  T       G   N   + A++  IG  V+D +VV + + +NM
Sbjct: 361 SWRATIIPAIAVPVVLLGTFAILNFLGFTINSLTMFAMVLSIGLLVDDAIVVVENVERNM 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +     +  ++    +++E     +  +    +  LPM  + GS       FA+ +   +
Sbjct: 421 RE--KKLCAKEATIIAMDEITSALIGVATVLSVVFLPMIFFTGSTGIIYKQFAVTIISSM 478

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           V++   ++ ++  I          N +
Sbjct: 479 VLSVVVALTLSPAICATFLKPHNPNKK 505



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 74/219 (33%), Gaps = 8/219 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +   Q  V  N    +S       S +  + S   ++G  ++L++ +   G S      
Sbjct: 785 PEDLYQWNVRNNENKMVSFEEFTNISWKKSEKSLTRYNGLASYLIQGEAASGISSGVAMD 844

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
                 K+                   S     + I    +S + + + +   ++ W   
Sbjct: 845 EMERLVKLNNKDTKYAWSGLSYQERLSSG----QAIYLYALSLVVIFLCLAALYESWSIP 900

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
              +  + L +   +      G+  ++    A+LT IG    + +++ + + +N   Y  
Sbjct: 901 FSVLLAVPLGVVGAVIAVYFRGLNNDIYFQVALLTTIGLVSKNAILIVEFV-EN--AYKK 957

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             S      +         + TS+A    ++P+A+  G+
Sbjct: 958 GESLTVAAVEGATLRFRPIIMTSLAFIAGIIPLAISTGA 996


>gi|163742661|ref|ZP_02150046.1| protein-export membrane protein SecD [Phaeobacter gallaeciensis
           2.10]
 gi|161383916|gb|EDQ08300.1| protein-export membrane protein SecD [Phaeobacter gallaeciensis
           2.10]
          Length = 414

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 171/413 (41%), Positives = 248/413 (60%), Gaps = 6/413 (1%)

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           V      + S          +   T   +++ LS+          + Q++EIIR+RID++
Sbjct: 2   VRGLANPITSLTGAGATDIAVS-GTGDILTVELSEQEKLASDDRTVRQALEIIRRRIDEV 60

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV----LPNNSKKGFMFGV 230
           G  E TIQR GS RILIQ+PG    S L++++GTTA+++F+ V       ++  G    V
Sbjct: 61  GTREPTIQRQGSDRILIQVPGIGSASELKEIIGTTAQLTFNPVVGRGTDADANAGVGNKV 120

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
               D DG  Y VE    ++G  L  A  +FD    +P V   F+  GAR+F + T +NI
Sbjct: 121 VPSLDEDGVFYTVEAAPVVTGEELVDAQPSFDQNG-RPAVSFRFNTTGARKFGDYTAENI 179

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           G P A+VLD  V++APVI   IP G   I+GNFTIE +  +A +LRAG+LP  L  +EER
Sbjct: 180 GSPFAIVLDEEVVSAPVIQSHIPGGSGIITGNFTIEESTNMAILLRAGALPAGLEFLEER 239

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            +G +LG DSI  G  A +   V +++FM + YG +G+ A+ ++ LN+ L    LSL+GA
Sbjct: 240 TIGPELGQDSIDAGKVATIVAFVGVLVFMALSYGLFGVFANIALILNIALIFGALSLIGA 299

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAGIVL +G+AVD+N+L+ ERIREE +  +    ++D G+S+A S I D+NIT 
Sbjct: 300 TLTLPGIAGIVLTVGMAVDANVLIFERIREELKAGRGPARAIDEGYSKALSAILDANITT 359

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            I  V+LF  G G VRGFAIT+GL I+ S+FTAI + R +++     ++ K+I
Sbjct: 360 FITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFERRRPKTI 412



 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/175 (22%), Positives = 89/175 (50%), Gaps = 4/175 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP++ ++ I  G V  I++ + +L+++ + +   F + A   LIL+I    G  +L G
Sbjct: 240 TIGPELGQDSIDAGKVATIVAFVGVLVFMALSYGL-FGVFANIALILNIALIFGALSLIG 298

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++++R+R+ +K           ID+  ++ L   +  
Sbjct: 299 ATLTLPGIAGIVLTVGMAVDANVLIFERIREELKA---GRGPARAIDEGYSKALSAILDA 355

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           ++  FI+ + +   G   +  FAI +  GI+ +  ++IF+   I++  ++ R   
Sbjct: 356 NITTFITAVILFAMGSGPVRGFAITLGLGIMTSVFTAIFVTRVIIVMWFERRRPK 410


>gi|115523247|ref|YP_780158.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Rhodopseudomonas palustris BisA53]
 gi|115517194|gb|ABJ05178.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris BisA53]
          Length = 1055

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 81/680 (11%), Positives = 193/680 (28%), Gaps = 38/680 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  +   +G L  L     +  + + P  +P                      
Sbjct: 9   RPRLAVVIALVTTLVGGLALL-----RIPVAQLPDIVPPQVR---------VSTTYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +     + K      S     +  + +SFA     +     V   +Q 
Sbjct: 55  AEVLESTVAQPIEAKVVGVDKMIYMKSSSGNDGSYTLDVSFALGSNPDINTVNVNNRVQN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   +         + +            +  +   +   +D++       
Sbjct: 115 ALSQLPAEVRLQGVNVQKRSSSMLQVINMYSVGQKYDQLFLTNYGLINVLDELARVTGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    +    D  +L  L    + +       N        G R + D    Q 
Sbjct: 175 EATLFGRYAYSMRIWFDIEKLSSLSLVPSDVVAAINAQNVQAPVGRIGARPVPDDQKFQL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  ++             K  +    +                 +           
Sbjct: 235 NLQTQGRLT-------------KPEEFGAIVLRANADGSVLKVSDVARVELGAQNADTYA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T          LR          V   +      +   
Sbjct: 282 RLNGDPTIGIGIFLAPGANAINTAAAIKTKLDTLRPRFPDSVQARVVYDSTVFVNDTIRA 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  L+   ++ +++I T A+L  LG ++   S+  +V
Sbjct: 342 VMHTLLEAFALVALVVFVFLGNWRATLIPIIAVPVSLIGTFAVLIALGTSVNTVSMLALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     +    S   +     ++  + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEEPELSPADATKKAMAQVTAPIIAITLVLLSVFVPIAF 461

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R FA+T+  +++IS   A+++  A+    +R+   +   +    R      
Sbjct: 462 LPGIMGELFRQFAVTISAAMVISAINALTLSPALCAVFLRHVGPRKGVMQWFGRRIDGAR 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLF-----THGLNYGIDFKGGIQLGVLANRPVDL 591
                 +R       +SIL  I     ++     T       + +G   + V       +
Sbjct: 522 DRYTGVVRIALRRPALSILAVIICGAGIWGLSLTTPTGFLPEEDQGAFFINVQLPDGASV 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +   S +  ++    +        + +         +     ++  +K         S+ 
Sbjct: 582 ARTESTVIEVENIVKTMPEVRDVLSIVGLSLLDNYSASNNAFMIVQLKPFADRKAASSSA 641

Query: 652 QNTEIVGPKISRELIRKGIV 671
           Q         ++++    ++
Sbjct: 642 QTLIGKTFGATQQVRTAMVL 661



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 66/166 (39%), Gaps = 9/166 (5%)

Query: 669  GIVGVIISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G  G I++   +  Y   + +   W   +  + ++ + +        +  +  +L A   
Sbjct: 868  GKTGYILALAVIFAYLFLVALYESWLIPVPVLLSVSIAVFGAFAGILVARVTLDLYAQIG 927

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LI  +  + +++ +  ++  +     +S +D  ++         + TS+A  + ++P
Sbjct: 928  LVVLIALAAKNGILIVEFAKEQREA---GLSIKDAAEQGARLRFRAVMMTSIAFIVGLVP 984

Query: 786  MAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +    G+ +    + + P+  G++ A+   I     +  +    R 
Sbjct: 985  LVWADGAAMLARRNLSTPVFAGMLTASLIGIIFIPMLYAWFQSLRE 1030



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 85/245 (34%), Gaps = 5/245 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +S V       Q  D   +        +        +++     ++     +    P S 
Sbjct: 264 VSDVARVELGAQNADTYARLNGDPTIGIGIFLAPGANAINTAAAIKTKLDTLRPRFPDSV 323

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
                        + IR  +  ++ +   + + +++    W   L  I  + + +  T  
Sbjct: 324 QARVVYDSTVFVNDTIRAVMHTLLEAFALVALVVFVFLGNWRATLIPIIAVPVSLIGTFA 383

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                G   N  ++ A++  IG  V+D +VV + + + +      +S  D   K++ +  
Sbjct: 384 VLIALGTSVNTVSMLALVLAIGIVVDDAIVVVENV-ERVMEEEPELSPADATKKAMAQVT 442

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +  ++      +P+A      G +   FA+ ++  +V++A +++ ++  +       
Sbjct: 443 APIIAITLVLLSVFVPIAFLPGIMGELFRQFAVTISAAMVISAINALTLSPALCAVFLRH 502

Query: 827 RAKNA 831
                
Sbjct: 503 VGPRK 507


>gi|284047629|ref|YP_003397968.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidaminococcus fermentans DSM 20731]
 gi|283951850|gb|ADB46653.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidaminococcus fermentans DSM 20731]
          Length = 1049

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 66/547 (12%), Positives = 152/547 (27%), Gaps = 34/547 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  +I  +G++ A         + ++P                           
Sbjct: 9   PVFACVIAIIITLVGIISA-----YNLPIAQYPQISNPRI---------SVSANYVGASA 54

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGV 122
           + V   +    ++  + +        +     N  + + F      +  + KV   +   
Sbjct: 55  EVVEESVAQAIEKQVNGVDNMVDMNSTSDNQGNYTLNVKFELGTDPDMDSVKVQNRVAQA 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  +     + T  +   +I+             +        Q +D +   +   +
Sbjct: 115 SASLPSEVSTYGVTTKKQSAETIMYFALTSPNGTYDTLFMKTYGATQFVDALKRVKGVSE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                   + +    DP ++ QL  T A +       N        G R        QY 
Sbjct: 175 VSEYG-PELSMRVWLDPMKMAQLGVTAADVKNAIASQNVQAPAGSIGARPNEADQEFQYS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
              K  +S              T     +I                 +            
Sbjct: 234 ARVKGRLS--------------TADEFGNIIIKNQNGNLLRVKDVARVEFGPRDDSVTSK 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L          S     +   ++     + A       P     + + N      S    
Sbjct: 280 LDGKNAMNYAISLNTDANALESVAEVKKVLAEAEKSFPPDLKLTIVQDNTEYVRESLKEV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV+++ ++ +   +  LV   +I ++++ T     +   T+   ++  +VL
Sbjct: 340 VVTLVETLVLVVLITWVFLQSWRATLVPTLAIPVSLLGTFGAFIIFDFTINTLTLFALVL 399

Query: 423 GIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
            IG+ VD  I+V E +             +           I  +    L   + + F  
Sbjct: 400 AIGIVVDDAIVVVEAVEHNVDALGMDPKEATYNAMREVSGAIVATAFVLLAVFLPVAFLS 459

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+++ +++ IS   A+S+  A+   +I+ K            F      +
Sbjct: 460 GITGVLYKQFALSIVVALSISAVVAMSLSPAVCAMVIKPKDPNGSKGFLGKMFGYFNRWL 519

Query: 539 AIQFMRA 545
                + 
Sbjct: 520 ERTTGKY 526



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 673  VIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            ++     + +Y+    +   W   LG I  +   +   +GF  L G+  ++     ++ L
Sbjct: 874  LMFGISLVFVYLCLSALYESWSLPLGIIFAVPSAVMGAVGFQYLRGLTSDIYLQIGMIVL 933

Query: 730  IGYSVNDKVVVYD--RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            IG S  + +++ +  +MR          +    +  ++   L   + T+ +  I  +P+A
Sbjct: 934  IGLSAKNAILIVEYAKMR-----VDDGWAVMPALVDTVTVRLRPILMTAFSTVIGAVPLA 988

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 G     S    +  G++ +   S+F+   + L I  
Sbjct: 989  WASGAGSGSRTSIGTAIIGGMMASTFLSLFLVPVLFLTIEK 1029



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 5/231 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R           S  +     N+ + L        +   V +++ +      P   +
Sbjct: 263 DVARVEFGPRDDSVTSKLDGKNAMNYAISLNTDANALESVAEVKKVLAEAEKSFPPDLKL 322

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              +     +   L    +  V    + +LI       W   L     + + +  T G F
Sbjct: 323 TIVQDNTEYVRESLKEVVVTLVETLVLVVLITWVFLQSWRATLVPTLAIPVSLLGTFGAF 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +F    N   + A++  IG  V+D +VV + +     +    +  ++    ++ E  G 
Sbjct: 383 IIFDFTINTLTLFALVLAIGIVVDDAIVVVEAV--EHNVDALGMDPKEATYNAMREVSGA 440

Query: 772 SVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPI 819
            V T+       LP+A   G   V+   FA+ +   + ++A  ++ ++  +
Sbjct: 441 IVATAFVLLAVFLPVAFLSGITGVLYKQFALSIVVALSISAVVAMSLSPAV 491


>gi|149376917|ref|ZP_01894672.1| Hydrophobe/amphiphile efflux-1 HAE1 [Marinobacter algicola DG893]
 gi|149358809|gb|EDM47278.1| Hydrophobe/amphiphile efflux-1 HAE1 [Marinobacter algicola DG893]
          Length = 1067

 Score =  165 bits (416), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 150/547 (27%), Gaps = 36/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  IGL+       P   +  +P  +P + +            V     
Sbjct: 10  RPIFAAVLSIIIFAIGLISI-----PNLPVSEYPEVVPPSVVVR---------TVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  S +  E +  F      + +   T++F      E    +V   +
Sbjct: 56  PKEIAETVATPLEEAISGV--EDMMYFKSVAGSDGVLQMTVTFRPGTDAEEATVRVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  + ++  + T  +    +++            +           D++   + 
Sbjct: 114 SQAQARLPEEVRRQGVTTQKQSPTFLMVVHLTSPNGTYDTLYLRNYARLHVRDRLARIQG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP R+     T + +       N        G   + DSD  
Sbjct: 174 VGDAQIFGGGDYAMRAWLDPDRIAARGLTASDVVRAMREQNVQVSAGQIGAEPVPDSDFL 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             +       +                +    +                 +         
Sbjct: 234 TLINARGRLETVE--------------EFGDIVLKRGDNGEILRLEDVARLEMGAGDYTL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     +        L A                    S 
Sbjct: 280 RSQLDGKDAVALGVFQAPGANALEIRDEVIATMDELSARFPQGVEYEAVYDTTIFVSDSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++VI T   L LLG ++   ++ G
Sbjct: 340 KAVIATLLEAVLLVVLVVTLFLQTWRASIIPLLAVPVSVIGTFGALYLLGYSINTLTLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +      +           I    +      + + F
Sbjct: 400 LVLAIGIVVDDAIVVVENVERNIEEGLKPLAAAHQAMKEVSGPIIAIGLVLCAVFIPMAF 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R FA+T+ +S +IS   ++++  A+   +++        +  +        
Sbjct: 460 LSGVTGQFYRQFAVTIAISTVISTINSLTLSPALAAMLLKPHSAPKDRLQRVIDVLFGWL 519

Query: 537 CIAIQFM 543
                  
Sbjct: 520 FRPFNRF 526



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 68/198 (34%), Gaps = 12/198 (6%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI----RFKWY 691
                  +T +               +S +   +G   +++  +A+L+   +       W 
Sbjct: 842  AQAMDTLTALADQVLPAGMAFEWTDLSYQQATQGNAALVVFPLAILLVFLVLAALYESWT 901

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAV-AAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L  I  + + +   L     F    N   V   ++ LIG +  + +++ +  R+   L
Sbjct: 902  LPLAVILIVPMCMLSAL-IGVWFSEGDNNIFVQVGLVVLIGLACKNAILIVEFARE---L 957

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 S  +   ++    L   + TS+    +V+P+ +    G  V  +    +  G++ 
Sbjct: 958  ELQGRSIVEAALEACRLRLRPIIMTSITFTAAVVPLVLATGAGAEVREALGTAVFAGMIG 1017

Query: 808  AASSSIFIAAPILLFIYD 825
                 +F+     + +  
Sbjct: 1018 VTLFGLFLTPVFYVALRK 1035



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 50/140 (35%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM- 748
           W  ++  +  + + +  T G   L G   N   +     ++   +   V     + +N+ 
Sbjct: 364 WRASIIPLLAVPVSVIGTFGALYLLGYSINTLTLFG--LVLAIGI--VVDDAIVVVENVE 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +     +       +++ E  G  +   +      +PMA   G        FA+ +A   
Sbjct: 420 RNIEEGLKPLAAAHQAMKEVSGPIIAIGLVLCAVFIPMAFLSGVTGQFYRQFAVTIAIST 479

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++  +S+ ++  +   +  
Sbjct: 480 VISTINSLTLSPALAAMLLK 499


>gi|291618070|ref|YP_003520812.1| MdtC [Pantoea ananatis LMG 20103]
 gi|291153100|gb|ADD77684.1| MdtC [Pantoea ananatis LMG 20103]
          Length = 1025

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/620 (11%), Positives = 165/620 (26%), Gaps = 44/620 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATTLLTLAIALAGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +      +I + F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSTSSLGSTRIIMVFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +   +    +       Q   ++        
Sbjct: 116 QSLLPTGMPSRPTYRKANPSDAPIMI-MTLTSDLYSPAQLYDYASTQLAQKLSQINGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  +                   
Sbjct: 175 VTVGGSSLPAVRVALNPQALFNQGVSLDAVRQTISNANQRRPQGAVED------------ 222

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N   +T      +                 +   +  V +  +
Sbjct: 223 --------GQQRWQLRTNDALQTASEYQPLVVHYNNGAAVRLSDVATVQDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +    A  +   T++        L           V +        S    
Sbjct: 275 SRGKPAVLLVIRKTADANVIETVDRIRAELPELHEIIPAAINLEVAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQSLMIAVALVILVVFVFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E I            +   G      T+   +++ +   + L   GG
Sbjct: 395 ATGFVVDDAIVVLENIARHVEAGMKPMAAALKGVREVGFTVLSMSLSLIAVFLPLLMTGG 454

Query: 483 GAVRGFA---ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              R FA   IT+ ++ILIS+F ++++   M  ++++    +S          L+     
Sbjct: 455 LIGRFFAEFSITLSVAILISLFVSVTLTPMMCAYLLKPHAPRSQPQRRGVGRLLLAVQRG 514

Query: 540 IQF------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                      AR+  + +    ++     +            G +   + A++ +    
Sbjct: 515 YARSLTVVLNHARWVLLLLVGTVALTVWLFISIPKTFLPEQDTGRLSGFISADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDG 613
           +R  LE       +  +   
Sbjct: 575 MRGKLEDFMKIVGADPDVSS 594



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 88/233 (37%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V +  +S+Q    +  +       LV  +    + +     +     ++ EI+P 
Sbjct: 254 VRLSDVATVQDSVQDVRNAGMSRGKPAVLLVIRKTADANVIETVDRIRAELPELHEIIPA 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKT 707
           +             R  + +    ++I+   +++ +++  +     L     + + +  T
Sbjct: 314 AINLEVAQDRSPTIRASLEEVEQSLMIAVALVILVVFVFLRSGRATLIPAVAVPVSLIGT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N  ++ A+    G+ V+D +VV + +    +     +       K + E
Sbjct: 374 FAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---ARHVEAGMKPMAAALKGVRE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
                +  S++     LP+ + GG +      F+I ++  I+++   S+ +  
Sbjct: 431 VGFTVLSMSLSLIAVFLPLLMTGGLIGRFFAEFSITLSVAILISLFVSVTLTP 483



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 95/216 (43%), Gaps = 6/216 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   + V+ ++  E +++ +T +   S+++ +     +  ++     +  ++ +  A
Sbjct: 803  TISFNLPEGVSLSQASEAIERTMTALGVPSSVRGSFAGTAQAFQQSQSSQLWLMLAAIAA 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L   ALF   F+L A+  +L LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALALFDTPFSLIALIGILLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     +S RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALEAERNGN--LSPRDAIFQACLLRFRPILMTTLAALFGALPLVLTSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               I +A G++++   +++    + L +   R K  
Sbjct: 981  PLGITIAGGLIMSQLLTLYTTPVVYLMMDKLRRKKR 1016


>gi|145219541|ref|YP_001130250.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205705|gb|ABP36748.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chlorobium phaeovibrioides DSM 265]
          Length = 1067

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/552 (10%), Positives = 137/552 (24%), Gaps = 43/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      + Q  + RFP   P               + +    
Sbjct: 8   RPVLATVISVIIVILGIV-----GMTQLPVTRFPDIAPP-------------SVTVTASY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +     +    I + F      +  A  V  
Sbjct: 50  PGASAETVGRSVAPPLEEAINGVENMIYMTSTSANDGSLSINVFFKQGTNADQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  +  +  + T   +   I+L   +                   +D +   
Sbjct: 110 RVAQATSRLPAEVNQIGVSTIKRQNSMIMLVNLSSATAEYDQTFLQNYAKINVVDDLARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q      +   +     P ++        ++       N       FG     D  
Sbjct: 170 PGVGQVSVYGNMDYSMRLWLRPEKMAAYRVNPQEVMAAINSQNLEAAPGSFGENGGLDMQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                        +    +                 +       
Sbjct: 230 YVMKYPGK----------------FACPGQYENIVIRANSDGSLLKLGDVARVEFGAYSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 + N        +     A         +   +      
Sbjct: 274 NVRVKSNGLPGIVLAVYQAPGSNANEVETQIRKVLEAATADFPSGISVSIPYSSKKVVDD 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV +V ++ +   +  L+   ++ + ++ T   ++L G ++ + ++
Sbjct: 334 SIEQVQHTLIEAFLLVFLVAYIFLQDFRSTLIPAIAVPVAILGTFFFMNLFGFSINVLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +  +  +       +         + I    +      + 
Sbjct: 394 FGLVLAIGIVVDDAIVVVEAVHAKMEKTRWPATVATVSAMREITTPIITITLVMASVFLP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      R FA T+ +++LIS   A+++  A+    +                  
Sbjct: 454 VGFLEGSTGVFYRQFAFTLAIAVLISAVNALTLSPALCALFLGEMHQDETKSGAHRFTGF 513

Query: 534 IPDCIAIQFMRA 545
                       
Sbjct: 514 QHRFFTGFNTGF 525



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 87/245 (35%), Gaps = 7/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V          ++  ++       L   Q    ++      +  V +  T   P     
Sbjct: 262 DVARVEFGAYSYNVRVKSNGLPGIVLAVYQAPGSNANEVETQIRKVLEAATADFPSGISV 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           +      K+  + I +    +I + + + +  +I    +   L     + + I  T  F 
Sbjct: 322 SIPYSSKKVVDDSIEQVQHTLIEAFLLVFLVAYIFLQDFRSTLIPAIAVPVAILGTFFFM 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   N+  +  ++  IG  V+D +VV + +    K+  T          ++ E    
Sbjct: 382 NLFGFSINVLTLFGLVLAIGIVVDDAIVVVEAVH--AKMEKTRWPATVATVSAMREITTP 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWR 827
            +  ++      LP+    GS       FA  +A  ++++A +++ ++  +  LF+ +  
Sbjct: 440 IITITLVMASVFLPVGFLEGSTGVFYRQFAFTLAIAVLISAVNALTLSPALCALFLGEMH 499

Query: 828 AKNAR 832
               +
Sbjct: 500 QDETK 504



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 54/164 (32%), Gaps = 10/164 (6%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTL 708
             + +  G          G + + +    + +Y     +   +   L  + ++   +    
Sbjct: 859  FSYDWKGQSREELESSGGQLAIFL-LSVIFVYFLLSALYESYLLPLAVMLSIPTGLLGVF 917

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                  GIE N+    A++ LIG    + +++ +     ++   + +S      +  N  
Sbjct: 918  IGIGFAGIENNIYVQVAIIMLIGLLAKNAILIVEFA---IQRRVSGMSLSAAALQGANAR 974

Query: 769  LGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA 809
            L   + TS+     ++P+    G       S       G+ +  
Sbjct: 975  LRPILMTSLTFVAGLIPLLFVTGPAAAGNHSIGAAAIGGMFIGM 1018


>gi|33862402|ref|NP_893962.1| RND family multidrug efflux transporter [Prochlorococcus marinus
           str. MIT 9313]
 gi|33640515|emb|CAE20304.1| putative RND family multidrug efflux transporter [Prochlorococcus
           marinus str. MIT 9313]
          Length = 1086

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 69/531 (12%), Positives = 149/531 (28%), Gaps = 28/531 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G++       P   +   P+      I +  +  GG+ L     
Sbjct: 9   KRPVLTTVCSILIVLVGIIAI-----PSLPIANLPNIASP-LIQVTANYGGGNSL----- 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQ 120
                   +    ++  + +        +   + Q+ I + F +S         V   + 
Sbjct: 58  ---VTEQAVTNPLEQQINGVPGVNYISSTSDMEGQSTINVYFDESTDINIDQVNVQNRVS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L    +   +         ++  Q    Q    A   +  I  Q    +      
Sbjct: 115 LAMPQLPEQVQATGVSVEQSNPSILLAYQVGSTQGQFDANYLNGLIYEQLYYPLSRVPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                            +P +L     T   +       N+   G + G           
Sbjct: 175 ANVAVLGGANPAYWLFINPDKLAANKLTAEDIINAIKSQNSVAIGGLVGGPPATGDQAYT 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +          L     N         + +S    G     +   + I        D 
Sbjct: 235 YPI----------LVENNGNLVSIEDFNNLIVSRTTSGNLLLLKDIGEVIYGSNTFTADA 284

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                +          +     A + P                S  
Sbjct: 285 IDVNGHPAMTLAVYQTPDSNALDVSNDVVKVIDQFAASAPPGVKVSQIYNIGQFIESSVE 344

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LVL++LF+ +   +  ++   +I +++I T A L +   ++   ++ G+
Sbjct: 345 GVVDALGLAIVLVLLILFLFLQNWRATIIPSLAIPISLIGTFAFLKVFDFSINQLTLLGL 404

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  GL VD  I+V E + +          +        +  +  + +  +   V + F+
Sbjct: 405 VLATGLVVDDAIVVIEAVSKNIESGMRPRQAALACMGELFGALVATALALMAVFVPVAFY 464

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
               G   + FA+T+  SI IS F A++    +   I+   K +       
Sbjct: 465 PGGIGIIYKQFALTIAFSIAISAFNALTFSPMLSGLILGSDKPREPKGWGW 515



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 81/219 (36%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R     G         + ++                      + +L       ++  
Sbjct: 863  NLYRTVLIQGAEAIGKSSGQALQAIQNLFQKQDFSNIGYAFTGLAALQLSAGSASIMVFG 922

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +++Y+ +      +   +  + T+ L +   L F A+  I+ N+ A   ++TLIG +
Sbjct: 923  LGLLIVYLVLSAQYESYVTPVIILMTVPLAMLGALAFLAIRSIDLNIYAQVGLVTLIGLA 982

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ +   +N+K   + ++  D +  S    L   + T++AA    LP+ V    G
Sbjct: 983  AKNGILIVEVAEQNLK---SGMTPSDAVIASAESRLRPILMTAIAALAGFLPLVVANGAG 1039

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                 S    +  G+VVA   S+ +  P  + +     +
Sbjct: 1040 AHSQQSLGTVIFGGLVVATVLSLGVVPPFYVVVKHLEER 1078



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 58/133 (43%), Gaps = 6/133 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +     + + +  T  F  +F    N   +  ++   G  V+D +VV + + KN+ 
Sbjct: 368 WRATIIPSLAIPISLIGTFAFLKVFDFSINQLTLLGLVLATGLVVDDAIVVIEAVSKNI- 426

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
              + +  R      + E  G  V T++A     +P+A + G    +   FA+ +AF I 
Sbjct: 427 --ESGMRPRQAALACMGELFGALVATALALMAVFVPVAFYPGGIGIIYKQFALTIAFSIA 484

Query: 807 VAASSSIFIAAPI 819
           ++A +++  +  +
Sbjct: 485 ISAFNALTFSPML 497


>gi|320103197|ref|YP_004178788.1| protein-export membrane protein SecD [Isosphaera pallida ATCC 43644]
 gi|319750479|gb|ADV62239.1| protein-export membrane protein SecD [Isosphaera pallida ATCC 43644]
          Length = 1074

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 65/237 (27%), Positives = 101/237 (42%), Gaps = 19/237 (8%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            G       L  +        R             P    +     G  ++ E     I  
Sbjct: 825  GPDTPTTSLVLRTDLPPDTIRPKLERLVTDVPNTPSLLFERLTNFGGVVAGETQLLAIYA 884

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG---------------- 715
            V+ S IA+  Y+W+RF    + + AI  L+ D+  TLGF A+                  
Sbjct: 885  VLASWIAIAAYLWLRFKSLAWGIAAIVALVHDVLITLGFIAMAHYLSVVPVVSQILMIEP 944

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + +L  VAA LTLIGYSVNDK+V++DR+R+      +       I+ +IN TL R++ T
Sbjct: 945  FKIDLPMVAAFLTLIGYSVNDKIVIFDRIRE--IRGKSPFLTTQNINDAINVTLSRTILT 1002

Query: 776  SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S+  +  V  +  +GG  I  FA  +  GIV    SS+ I+A +L  +    +   +
Sbjct: 1003 SLTTWFVVTLLYFFGGEGIHGFAYCLVIGIVTGTYSSVAISATVLAALLAKPSPGGK 1059



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 82/207 (39%), Gaps = 4/207 (1%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            +     ++++++               E +GP +  + I KG+  + +S + + I++  
Sbjct: 371 SNAEIKYLIDILRSGSLPATLDPNPLFEETIGPTLGEDTINKGVRAIFVSMLLVPIFMIF 430

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            +  Y  + A+  L L++   L   +L    F L  +A +   IG +V+  +++++R+R+
Sbjct: 431 YYGRYAGVIAVFALALNMLLLLAAMSLGQATFTLPGLAGLALTIGMAVDANILIFERIRE 490

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
                         +    +      +  ++    + L +   G   I  FAI +  G++
Sbjct: 491 E---KNRGAGLAQQVRSGFDRAWSTILDANLTTIFAGLILLYLGTEEIKGFAITLILGLI 547

Query: 807 VAASSSIFIAAPIL-LFIYDWRAKNAR 832
               +++  +  I    ++    K  R
Sbjct: 548 WNMLTAVVYSRWIFEYLLHKRWIKEFR 574



 Score =  109 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 138/619 (22%), Positives = 237/619 (38%), Gaps = 74/619 (11%)

Query: 40  PKNRISLGLDLRGGSHLVLEVDEDD-----------------FVNGFLQMYSDELRSFLK 82
           P+ R+ LG+DL GG+ LV +   D                     G L      L+  L 
Sbjct: 25  PEERLKLGIDLSGGTILVYQATVDSGSLDPAADDPNATPSGSAAPGSLDDLIVSLKQRLN 84

Query: 83  KEGIGVFSMRQ-IQNKITLSFA-----DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLV 136
            +G+   ++R   +N++ +        +    +     V      + +    D  +   +
Sbjct: 85  PDGLKDITIRSAGENRLEILLPRATPEEVEDIKRRMTDVGSLEFRILANRRDDRSQIEAL 144

Query: 137 TTTEKEISI----------------VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                E  +                  S   +    +   + S  ++R           T
Sbjct: 145 EADRNEAVLPRLRSNYLFVKLGEQLTGSGEGVSHTSTTLTDLSKNLVRNAYAGKAKLRIT 204

Query: 181 IQRLGSHRILIQLPGEQDP-------------SRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             R GS R   Q                     ++                  +  +   
Sbjct: 205 GTRPGSTRAETQEFAILRNSSNTFTVKGTIPFEKVTSYELRYIPSEMSTTPDPSDPQSPY 264

Query: 228 FGVRFLRDSDGNQYLVEDKVE--ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                        +++  +    ++G +L       D +     V  SF+  GARRF E+
Sbjct: 265 VRRVQRGPGHEEFFILAKRDRYNVTGEYLRSVRQEIDDQLKNA-VGFSFNTAGARRFGEL 323

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI---------SGNFTIETAGILAAMLR 336
           TR    K          +    +  + P   A I            F+      L  +LR
Sbjct: 324 TRQYQPKEDGRFRYMLAIVLDNVVMSAPFLNAVIKDRGIISGGQNGFSNAEIKYLIDILR 383

Query: 337 AGSLPIKLNIVE--ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY-GKWGLVADFS 393
           +GSLP  L+     E  +G  LG D+I KG  AI   ++L+ +FMI  Y    G++A F+
Sbjct: 384 SGSLPATLDPNPLFEETIGPTLGEDTINKGVRAIFVSMLLVPIFMIFYYGRYAGVIAVFA 443

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           + LN++L LA +SL  AT TLP +AG+ L IG+AVD+NIL+ ERIREE  +   +   + 
Sbjct: 444 LALNMLLLLAAMSLGQATFTLPGLAGLALTIGMAVDANILIFERIREEKNRGAGLAQQVR 503

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            GF RA+STI D+N+T + A ++L + G   ++GFAIT+ L ++ +M TA+   R +  +
Sbjct: 504 SGFDRAWSTILDANLTTIFAGLILLYLGTEEIKGFAITLILGLIWNMLTAVVYSRWIFEY 563

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI-CLLFTHGLNYG 572
           ++  + +K      +          +I F+   +W   +S+   +  +  +    G    
Sbjct: 564 LLHKRWIKEFRFASVLTKP------SIDFLGLWYWFQAVSLTLIVVGLVAVTSLGGRLLN 617

Query: 573 IDFKGGIQLGVLANRPVDL 591
           IDF GG  + +        
Sbjct: 618 IDFTGGTLVTIRLKDQSSS 636


>gi|195940547|ref|ZP_03085929.1| aminoglycoside/multidrug efflux system [Escherichia coli O157:H7
           str. EC4024]
          Length = 394

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 40/419 (9%), Positives = 100/419 (23%), Gaps = 37/419 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G+L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGVLAI-----TSLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSATGQATVTLSFTAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSALRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L  +  T   ++      N        G     D+ 
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPNKLNSVQMTAKDVTDAIESQNAQIAVGQLGGTPSVDNQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINSQSLL-------------QTPEQFRNITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                      +       +  +   T +        L           V          
Sbjct: 276 DYLSRFNGNAASGLGVKLASGANEMATAQRVLDRLDELSHYFPHGLEYKVAYETTSFVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           S      T      LV +V+++ +   +  L+   ++ + ++ T A+L   G ++   +
Sbjct: 336 SIEDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLYAFGYSINTLT 394


>gi|160888101|ref|ZP_02069104.1| hypothetical protein BACUNI_00509 [Bacteroides uniformis ATCC 8492]
 gi|156862412|gb|EDO55843.1| hypothetical protein BACUNI_00509 [Bacteroides uniformis ATCC 8492]
          Length = 1059

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/621 (11%), Positives = 162/621 (26%), Gaps = 56/621 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P               + +  +
Sbjct: 8   KRPVMAISISVLILVIGLISLF-----TLPVEQYPDIAPPT-------------VYVSAN 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVT 116
                    L      L   +   E +   S          I + F      +  A  V 
Sbjct: 50  YTGADAEAVLNSVIMPLEESINGVENMMYISSTATNAGSATIQVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 110 NRVSKAQGLLPAEVTKIGVTTQKRQTSFLQIGALVSTDGRYDQTFLANYLDINVIPQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDVTAVLGEQNIEAPTGSLGENSKNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +   +            ++      
Sbjct: 229 Q----------------FTMKYRGRLKSVEEFQNTVVRSQSDGSVLRLKDVADVELGTLT 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +R         +    +     
Sbjct: 273 YSFRSEMDSKPAVLFMMFQTAGSNATAVNKQITAQIDEMRKSLPEGTEFVTMMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 333 ASIHNVVETLVIAIILVILVVYFFLQDFKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIISCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG +      F +TM  ++ ISM +A+++  A+   ++R         +   R  
Sbjct: 453 PVTFMGGTSGVFYTQFGVTMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 533 LIPDCI------------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
              +                           ++    +    +  T       + +G I 
Sbjct: 513 AAYNASFNAVLGKYKKGVMFFIHHRWMVWTSLAATVVLLVYLMSTTKTGLVPQEDQGVIM 572

Query: 581 LGVLANRPVDLSVVRSNLESL 601
           + V  +    L      +  L
Sbjct: 573 VNVSTSPGSTLEETTKVMNKL 593



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 112/364 (30%), Gaps = 9/364 (2%)

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+ +    L    G   + F        +I     I  V  +M     Y     +    +
Sbjct: 135 TSFLQIGALVSTDGRYDQTFLANYLDINVIPQIKRIEGVGDVMELGDTYSMRIWLKPERM 194

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +++ L+P  +              S+  +  ++              +      V +   
Sbjct: 195 AQYGLVPSDVTAVLGEQNIEAPTGSLGENSKNVFQFTMKYRGRLKSVEEFQNTVVRSQSD 254

Query: 589 VDL---SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             +     V              +         +  Q    ++ A  + +     ++ + 
Sbjct: 255 GSVLRLKDVADVELGTLTYSFRSEMDSKPAVLFMMFQTAGSNATAVNKQITAQIDEMRKS 314

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
           +P  T   T +         I   +  ++I+ I +++ ++     +   L    ++I+ +
Sbjct: 315 LPEGTEFVTMMSSNDFLFASIHNVVETLVIAIILVILVVYFFLQDFKSTLIPSISIIVSL 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T       G   N+  + A++  IG  V+D +VV + ++          S       +
Sbjct: 375 VGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKFDAGYK--SPYLATKDA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + +     +  +       +P+   GG+       F + MA  + ++  S++ +   +  
Sbjct: 433 MGDVTMAIISCTCVFMAVFIPVTFMGGTSGVFYTQFGVTMATAVGISMISALTLCPALCA 492

Query: 822 FIYD 825
            +  
Sbjct: 493 IMMR 496



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 74/254 (29%), Gaps = 9/254 (3%)

Query: 579  IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
                        +S   +  + L     +  N        V           Q  + E+ 
Sbjct: 785  NMFVRNGTEMAPVSQFVTLNKVLGPETANRFNLYSAIAANVNPAEGYSSGEVQKVIAEVA 844

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            ++ +                     + +   I  + I  I  LI   +   +      I 
Sbjct: 845  EQTLPLGYGYEYGGMAREEANTGGAQTVF--IYAICIFLIY-LILACLYESFLIPFAVIF 901

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            ++   +  +  F  + G+E N+     V+ LIG      +++ +     ++     +   
Sbjct: 902  SVPFGLMGSFLFAKVLGLENNIYLQTGVIMLIGLLAKTAILITE---YAIERRRKGMGIV 958

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            +    +    L   + T +     +LP+      G +   S    +  G+++   + +F+
Sbjct: 959  ESAYSAAQVRLRPILMTVLTMIFGMLPLMFSSGAGANGNSSLGTGVVGGMLIGTLALLFV 1018

Query: 816  AAPILLFIYDWRAK 829
                 +     + K
Sbjct: 1019 VPVFYIIFEYLQEK 1032


>gi|90424226|ref|YP_532596.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
 gi|90106240|gb|ABD88277.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
          Length = 1036

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/651 (11%), Positives = 180/651 (27%), Gaps = 40/651 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  IG++      + Q  + RFP+  P +            +       
Sbjct: 8   RPVFAWVIAIFIALIGVIA-----MTQLPVSRFPTIAPPSV---------SIYATYTGAT 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +N  +    +   S +K       ++    +  IT +F      +     V   L+ 
Sbjct: 54  PQTINDSVVTLIERELSSVKNLLYFESTVDTSGSASITATFKPGTAPDLAQVDVQNRLKA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    ++  +   +     +++   N        +     + R  + ++   +   
Sbjct: 114 VEPRLPEAVRRIGVTVESAASDFLMIVTLNSPNGAYDELALGDYMTRHIVQELKRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP++L     + A+++      N        G            
Sbjct: 174 RVQTFGS-EKAMRIWVDPAKLVSYSLSLAQITAAIQAQNAQIAPGRVGAEPTVLGQKVSI 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    ++                 +    +   E    +        +      +    
Sbjct: 233 PLTVYGQL-------------QTPEEFRAIVLRAESDGSKLVLGDVARVELGAQSLSFAT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +        A        +            A L           V          S   
Sbjct: 280 LENGKPATAAGIQLAPGANAVRAAAAVYARLAELAPAMPEGMSYAVGFDTAPFVKISIEK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   ++ L+      + ++ T A++ + G ++ + ++ G+V
Sbjct: 340 VVHTLIEAMVLVVLVMLLFLQNIRYTLIPAIVAPIALLGTFAVMWIAGYSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +           I    +      + +   
Sbjct: 400 LAIGIIVDDAIVVVENVERIMASEGLPPKQATQKAMKEITGAIIGITLVLSAVFIPMGLA 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----KKMKSIDINPLSRFFL 533
            G      R F ++M +SIL S F A+S+  A+   +++        K       +R F 
Sbjct: 460 SGSVGAIYRQFTLSMAVSILFSAFLALSLTPALCATLLKPIAAGHHEKKGFFGWFNRSFN 519

Query: 534 IPDCIAIQFMR---ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                   F+     R   + +     + ++   +T   +  +  +           P D
Sbjct: 520 RLTEGYAGFVAALLRRTGRMMVVYAVIVAALAYCYTRLPSSFVPAEDQGNFMTSFTLPAD 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +  R+     Q             N  +      G           +K  
Sbjct: 580 ATAERTLSIVKQYDAYVATRAAVASNTSIIGFGFSGSGSNAALAFTSLKDW 630



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 65/168 (38%), Gaps = 7/168 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + +S + + + +   ++ W   L  +  + L I   +    + G+E ++     +
Sbjct: 864  QAPILLALSMLVVFLVLAALYESWSIPLSVMLVVPLGILGAVLAVQIRGLENDVFFKVGL 923

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  R    L      F D + ++    L   + TS A  + V+P+
Sbjct: 924  ITIIGLSAKNAILIVEFAR---SLRAEGREFGDAVIEAARLRLRPILMTSFAFALGVVPL 980

Query: 787  AVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             V  G       +    +  G++ A   ++       + +        
Sbjct: 981  MVARGASAETQHAIGTGVFGGMLSATVLAVLFVPVFYVVVMKRFGSRK 1028



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           IR+    A+ A   L      T     + G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 362 IRYTLIPAIVAPIAL----LGTFAVMWIAGYSINVLTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               + +  +  +    K++ E  G  +  ++      +PM +  GSV      F + MA
Sbjct: 417 -ERIMASEGLPPKQATQKAMKEITGAIIGITLVLSAVFIPMGLASGSVGAIYRQFTLSMA 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I+ +A  ++ +   +   +  
Sbjct: 476 VSILFSAFLALSLTPALCATLLK 498


>gi|312884171|ref|ZP_07743883.1| preprotein translocase subunit SecF [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368219|gb|EFP95759.1| preprotein translocase subunit SecF [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 300

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/279 (27%), Positives = 144/279 (51%), Gaps = 6/279 (2%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R     IS++  I S+  L T+GLN G+DF GG+   V  +  +    +   L+      
Sbjct: 13  RSITSIISLVLMIISLGALATNGLNMGLDFTGGMVTEVKVDNSISHEKMVETLQPALGQF 72

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            +  + D    ++VR         A+      + K ++ I     + +  +VG ++ ++L
Sbjct: 73  TNVTHADQAGRWMVRYPIP-----AEGEQTADLVKVLSPISNQVEVISNSMVGSQVGQDL 127

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           I +G + ++IS +++L Y+  RF+W  A G++  L+ D+   LGFFA   +EFNLT  AA
Sbjct: 128 IDQGGLALMISMLSILGYLCFRFEWRLASGSLLALLHDVVLVLGFFAASQMEFNLTVFAA 187

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +L ++GYS+ND +++ DR+R+ + L    +    + D ++  T  R++ TS    ++V  
Sbjct: 188 ILAILGYSLNDSIIIADRIRE-LLLAKQELPIEKINDDAVIATFSRTMVTSGTTLLTVSA 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + GG+ +  F+I M  GI+    SSI I   +  ++ 
Sbjct: 247 LWIMGGAALQGFSIAMFIGILSGTWSSISIGTVLPEWLK 285


>gi|257453900|ref|ZP_05619177.1| nodulation protein [Enhydrobacter aerosaccus SK60]
 gi|257448672|gb|EEV23638.1| nodulation protein [Enhydrobacter aerosaccus SK60]
          Length = 1060

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 61/549 (11%), Positives = 158/549 (28%), Gaps = 34/549 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  +  ++   +  IGLL        +  ++ FP+      +          + V     
Sbjct: 10  NPVFAAMIMLALMVIGLLATF-----RMKVEEFPNIEFPFVV---------VNTVYSGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    ++  + +          +Q  +++ + F  +   +  A  V   L  V
Sbjct: 56  PEVIETDITKKIEDQVNTIAGVKEVTSVTQQGLSQVIVQFDLNIPSDVAAQNVRDKLALV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                 +    ++      +  +V      D       E S  +      Q+       +
Sbjct: 116 TPTFRDEVTTPIVAQYNPADAPVVSVTFRSD--KMSLRELSTYLDNTVKKQLQTVTGVGR 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+    +P+++     +  ++S      N          +          L
Sbjct: 174 VDILGGRQRQIRVLLNPTQMNAYKVSVNQISNALRSENVELPVGTINNQNQEMVIQVNGL 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+   E                    V             +      +    A      +
Sbjct: 234 VKTPNE---------------FNQIIVAQNRSSTGAIVPVYLSQVAQVVDGQAEAESASL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +    ++      A ++A         V   +  +  GS +  
Sbjct: 279 QNGQPAVAMDIIKMSDANVIDVVDKTQQRLAEIQATLPSGVTMTVVADSSKSIRGSLNNV 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    A L + ++++ +   +  ++   ++ ++++ TLA +   G ++ + ++  + L
Sbjct: 339 VRTLIEGAILAVFIVWLFLGSWRSTIITGLTLPISLLGTLAAIWTFGFSINMMTLLALAL 398

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL +D  I+V E I       +    +   G       +  + +  +   + + F G 
Sbjct: 399 CIGLLIDDAIVVRENIVRHVGMGKHHRQAALDGTQEIGLAVLATTLVIVAVFLPVAFMGG 458

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     F +T+  ++L+S+F + ++   +             D       F       
Sbjct: 459 IIGRFFYQFGVTVSTAVLLSLFVSFTLDPMLSSIWPDPDAAHQHDRLNGRVSFRKRPIAW 518

Query: 540 IQFMRARFW 548
           +     R  
Sbjct: 519 LLAGFQRLL 527



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/278 (10%), Positives = 92/278 (33%), Gaps = 9/278 (3%)

Query: 562  CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
              +  +  N     +        +    +   +   L  +     +       +  L R 
Sbjct: 769  VNVRLNDDNRKTISQLQSMYLSSSRTDQNGQPILVPLSQVANFSETLGAPQINRRSLFRE 828

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                 ++  +            +         +  V           G     +    + 
Sbjct: 829  VVVQANTDGRPAGDIGADITKIQNEMKLPPGYSFAVQGSNKDMAESIGYATTALGLAIVF 888

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            IY+ +      + + +  + +L L +        LFG   N+ ++  ++ L+G    + +
Sbjct: 889  IYMLLGSQFNSFLYPVAIMASLPLSLIGVFFALFLFGSSLNIFSIIGIIMLMGLVCKNAI 948

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D +++++   +  +S  + I  +    L   + T+ A  + ++P+A+    G     
Sbjct: 949  LLIDFIKESL---SKGLSRNEAIMLAGQTRLRPILMTTAAMVMGMIPLALGIGEGSEQQA 1005

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              A  +  G++ +   ++ +   I  ++ D + +  R+
Sbjct: 1006 PMAHAIIGGVITSTLLTLIVVPVIYTYLDDGKQRFLRL 1043



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 82/241 (34%), Gaps = 9/241 (3%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           PV LS V   ++     + +          +  ++    + +      +    +I   +P
Sbjct: 257 PVYLSQVAQVVDGQAEAESASLQNGQPAVAMDIIKMSDANVIDVVDKTQQRLAEIQATLP 316

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                       K  R  +   +  +I  + +A+ I       W   +    TL + +  
Sbjct: 317 SGVTMTVVADSSKSIRGSLNNVVRTLIEGAILAVFIVWLFLGSWRSTIITGLTLPISLLG 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSISFRDLIDKSI 765
           TL     FG   N+  + A+   IG  ++D +VV    R+N+  +       R       
Sbjct: 377 TLAAIWTFGFSINMMTLLALALCIGLLIDDAIVV----RENIVRHVGMGKHHRQAALDGT 432

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     + T++      LP+A  GG +      F + ++  ++++   S  +   +   
Sbjct: 433 QEIGLAVLATTLVIVAVFLPVAFMGGIIGRFFYQFGVTVSTAVLLSLFVSFTLDPMLSSI 492

Query: 823 I 823
            
Sbjct: 493 W 493


>gi|332519317|ref|ZP_08395784.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Lacinutrix algicola 5H-3-7-4]
 gi|332045165|gb|EGI81358.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Lacinutrix algicola 5H-3-7-4]
          Length = 1045

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/521 (11%), Positives = 146/521 (28%), Gaps = 43/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++           ++ +P   P               + +  + 
Sbjct: 8   RPVLSTVISIIIVMLGVISI-----TTLPIEEYPDIAPPT-------------IKVTANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +     +   +   EG+   +     N   +IT+ F      +  A  V  
Sbjct: 50  TGANAETVLESVIVPIEEQINGVEGMTYITSTASNNGTAEITVYFDQETDADIAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  +VT  ++  +++      +     A      +    I  +   
Sbjct: 110 RVARATPLLPQEVTQTGVVTQKQETSALMFISMYSESENYDATFIQNYLKINVIPAMQRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                     +    +    +P +L       + ++      N        G     + +
Sbjct: 170 SGVGDVSVFSQQDYAMRVWLNPEKLASYNLIPSDITAALAEQNLEAAAGSLGE---NNGE 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +                            +                 I       
Sbjct: 227 SFSYTLTYSGRFKDEAQYSD-------------IVIKALGNGEFLRLKDVATIELDAQSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +    IE   +    ++A         V          
Sbjct: 274 SSNAMSMGNPAVFMGIFQTKGSNAQEIIENIKVTLEDVKADLPEGLDIFVPYDTSLFLNA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ +++I T   L++ G ++ L ++
Sbjct: 334 SIEKVISTLLEAFLLVFLVVFIFLQDFRSTLIPAIAVPVSIIGTFFFLNVFGYSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +  +   +   +     +     I    +      + 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHAKMDEGEHNPKKATLTAMNEISGAIISITLVMAAVFIP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F  G        F +T+ ++ILIS   A+++  A+   +
Sbjct: 454 VTFITGPTGVFYEQFGVTLIIAILISAVNALTLSPALCALL 494



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 89/245 (36%), Gaps = 6/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V +     Q    +  +      F+   Q +  ++      +++  + +   +P     
Sbjct: 262 DVATIELDAQSYSSNAMSMGNPAVFMGIFQTKGSNAQEIIENIKVTLEDVKADLPEGLDI 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                        I K I  ++ + + + + ++I    +   L     + + I  T  F 
Sbjct: 322 FVPYDTSLFLNASIEKVISTLLEAFLLVFLVVFIFLQDFRSTLIPAIAVPVSIIGTFFFL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +FG   NL  + A++  IG  V+D +VV + +   M       + +     ++NE  G 
Sbjct: 382 NVFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHAKMDEGEH--NPKKATLTAMNEISGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++      +P+    G        F + +   I+++A +++ ++  +   +     
Sbjct: 440 IISITLVMAAVFIPVTFITGPTGVFYEQFGVTLIIAILISAVNALTLSPALCALLLKEHK 499

Query: 829 KNARI 833
           ++  +
Sbjct: 500 EDEEL 504



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 56/166 (33%), Gaps = 6/166 (3%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +   + ++       +       +      + +L   +          G+E N+    A+
Sbjct: 871  QTTFIFILSILFVYFLLSAQYESYLLPFAVVLSLPFGVFGAYISTKFLGLENNIYFQIAL 930

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG    + +++ +     ++      S  D         L   + TS A  + ++P+
Sbjct: 931  IMLIGLLAKNAILIVEFA---LQRRKQGESIVDAAIDGAKSRLRPILMTSFAFILGLMPL 987

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            A+    G     S     A G+++     +F+   + +     + K
Sbjct: 988  ALASGVGSEGNNSIGSGAAGGMLIGTILGVFVIPILFILFQWLQEK 1033


>gi|317478127|ref|ZP_07937302.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
 gi|316905725|gb|EFV27504.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
          Length = 1059

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 73/621 (11%), Positives = 162/621 (26%), Gaps = 56/621 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P               + +  +
Sbjct: 8   KRPVMAISISVLILVIGLISLF-----TLPVEQYPDIAPPT-------------VYVSAN 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVT 116
                    L      L   +   E +   S          I + F      +  A  V 
Sbjct: 50  YTGADAEAVLNSVIMPLEESINGVENMMYISSTATNAGSATIQVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 110 NRVSKAQGLLPAEVTKIGVTTQKRQTSFLQIGALVSTDGRYDQTFLANYLDINVIPQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDVTAVLGEQNIEAPTGSLGENSKNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +   +            ++      
Sbjct: 229 Q----------------FTMKYRGRLKSVEEFQNTVVRSQSDGSVLRLKDVADVELGTLT 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +R         +    +     
Sbjct: 273 YSFRSEMDSKPAVLFMMFQTAGSNATAVNKQITAQIDEMRKSLPEGTEFVTMMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 333 ASIHNVVETLVIAIILVILVVYFFLQDFKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIISCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG +      F +TM  ++ ISM +A+++  A+   ++R         +   R  
Sbjct: 453 PVTFMGGTSGVFYTQFGVTMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 533 LIPDCI------------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
              +                           ++    +    +  T       + +G I 
Sbjct: 513 AAYNASFNAVLGKYKKGVMFFIHHRWMVWTSLAATVVLLVYLMSTTKTGLVPQEDQGVIM 572

Query: 581 LGVLANRPVDLSVVRSNLESL 601
           + V  +    L      +  L
Sbjct: 573 VNVSTSPGSTLEETTKVMNKL 593



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 112/364 (30%), Gaps = 9/364 (2%)

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+ +    L    G   + F        +I     I  V  +M     Y     +    +
Sbjct: 135 TSFLQIGALVSTDGRYDQTFLANYLDINVIPQIKRIEGVGDVMELGDTYSMRIWLKPERM 194

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +++ L+P  +              S+  +  ++              +      V +   
Sbjct: 195 AQYGLVPSDVTAVLGEQNIEAPTGSLGENSKNVFQFTMKYRGRLKSVEEFQNTVVRSQSD 254

Query: 589 VDL---SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             +     V              +         +  Q    ++ A  + +     ++ + 
Sbjct: 255 GSVLRLKDVADVELGTLTYSFRSEMDSKPAVLFMMFQTAGSNATAVNKQITAQIDEMRKS 314

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
           +P  T   T +         I   +  ++I+ I +++ ++     +   L    ++I+ +
Sbjct: 315 LPEGTEFVTMMSSNDFLFASIHNVVETLVIAIILVILVVYFFLQDFKSTLIPSISIIVSL 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T       G   N+  + A++  IG  V+D +VV + ++          S       +
Sbjct: 375 VGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKFDAGYK--SPYLATKDA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + +     +  +       +P+   GG+       F + MA  + ++  S++ +   +  
Sbjct: 433 MGDVTMAIISCTCVFMAVFIPVTFMGGTSGVFYTQFGVTMATAVGISMISALTLCPALCA 492

Query: 822 FIYD 825
            +  
Sbjct: 493 IMMR 496



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 74/254 (29%), Gaps = 9/254 (3%)

Query: 579  IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
                        +S   +    L     +  N     +  V           Q  + E+ 
Sbjct: 785  NMFVRNGTEMAPVSQFVTLNRVLGPETANRFNLYSAISANVNPAEGYSSGEVQKVIAEVA 844

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            ++ +                     + +   I  + I  I  LI   +   +      I 
Sbjct: 845  EQTLPLGYGYEYGGMAREEANTGGAQTVF--IYAICIFLIY-LILACLYESFLIPFAVIF 901

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            ++   +  +  F  + G+E N+     V+ LIG      +++ +     ++     +   
Sbjct: 902  SVPFGLMGSFLFAKVLGLENNIYLQTGVIMLIGLLAKTAILITE---YAIERRRKGMGIV 958

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            +    +    L   + T +     +LP+      G +   S    +  G+++   + +F+
Sbjct: 959  ESAYSAAQVRLRPILMTVLTMIFGMLPLMFSSGAGANGNSSLGTGVVGGMLIGTLALLFV 1018

Query: 816  AAPILLFIYDWRAK 829
                 +     + K
Sbjct: 1019 VPVFYIIFEYLQEK 1032


>gi|325105259|ref|YP_004274913.1| acriflavin resistance protein [Pedobacter saltans DSM 12145]
 gi|324974107|gb|ADY53091.1| acriflavin resistance protein [Pedobacter saltans DSM 12145]
          Length = 1033

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 82/618 (13%), Positives = 185/618 (29%), Gaps = 45/618 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I   G++           +  FPS  P                     
Sbjct: 9   KRPVLAIVMNLVIVLFGII-----GYTFLGVREFPSIDPPVV---------SVRTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    ++  + +        S  Q  + IT+ F  ++  E  A+ V   +  
Sbjct: 55  NADIVESQITEPLEKSLNSIDGIKNLSSSSNQGSSVITIEFNLNKNLEEAANDVRDKVSQ 114

Query: 122 VNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  D     ++        +I+     I     + +E S         +I      
Sbjct: 115 AARQLPKDIDGLPIVSKADANSDAII--SMTIQSDKRNILEVSDFAENVIAQRIQTIPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                  +    +    +P +L     T   +       N                D  +
Sbjct: 173 SSVQIWGQKKFAMRLWLNPDKLASYALTPLDVRNALEAQNVDLPSGKIS------GDNTE 226

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +V+    +S                     +     G          +           
Sbjct: 227 LVVKTSGNLSSEDEFEE--------------LIIKNDGTNIIRLKDVGSAVLGPENEETV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              +   +       +   +     +        L+          +   N      S +
Sbjct: 273 LRSSGKPMVATAIIPQPGANYLDIAKEFYKRYDELKKELPEDYTLNIALDNTLFIKRSVT 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV+I++++              I +++I T  ++ LLG ++ + ++  I
Sbjct: 333 EVAETILIALVLVIIIIYLFFRDWSIAFRPLIDIPVSLIATFFIMYLLGFSINVLTLLAI 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  GL VD  I+V E I ++  +  S F +   G +  +  I   +IT     + + F 
Sbjct: 393 VLATGLVVDDGIVVTENIYKKVEEGMSPFEAAIRGSNEIFFAIISISITLAAVFLPVIFL 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F + +G ++LIS F ++++   +  ++++ +   S   +    +F + + 
Sbjct: 453 EGFVGRLFREFGVVIGAAVLISAFVSLTLTPMLNAYLMKSEHKHSKFYDKTEPYFELMNN 512

Query: 538 IA----IQFMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                  +FM+ R+     + + F +  I           +D + G+ L + A       
Sbjct: 513 SYETSLNKFMKRRWLAFPIVILCFVLIGIFWKVLPKETAPLDDRSGVNLTITAPEGASFE 572

Query: 593 VVRSNLESLQIGDISFQN 610
              + ++ +         
Sbjct: 573 YTDAFIQKVNHIIKDTVP 590



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 64/153 (41%), Gaps = 7/153 (4%)

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           Y++ R  W  A   +  + + +  T     L G   N+  + A++   G  V+D +VV +
Sbjct: 350 YLFFR-DWSIAFRPLIDIPVSLIATFFIMYLLGFSINVLTLLAIVLATGLVVDDGIVVTE 408

Query: 743 RMRKNMKLYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
            +    K     +S  +   +  NE    +     T  A F+ V+ +  + G +   F +
Sbjct: 409 NI---YKKVEEGMSPFEAAIRGSNEIFFAIISISITLAAVFLPVIFLEGFVGRLFREFGV 465

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +   ++++A  S+ +   +  ++     K+++
Sbjct: 466 VIGAAVLISAFVSLTLTPMLNAYLMKSEHKHSK 498



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 56/147 (38%), Gaps = 7/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   +  I T+ L +        + G  +N+ +    + LIG    + +++ +      
Sbjct: 876  SFIDPIIIIVTVPLAVAGAFFSLWILGQSWNIFSQIGTIMLIGLVTKNGILIVEFAN--- 932

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
            +L    +     I +S    L   + TS+A  +  LP+A+  G+      S    +  G 
Sbjct: 933  QLKEQGVPLPQAIRQSAVARLRPILMTSLAIALGALPIAMALGAAAKSRMSMGTVIIGGT 992

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + +   ++++   I  +      K ++
Sbjct: 993  MFSLILTLYVIPAIYSYW-SREHKISK 1018


>gi|254424995|ref|ZP_05038713.1| protein-export membrane protein SecF [Synechococcus sp. PCC 7335]
 gi|196192484|gb|EDX87448.1| protein-export membrane protein SecF [Synechococcus sp. PCC 7335]
          Length = 325

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 78/309 (25%), Positives = 152/309 (49%), Gaps = 22/309 (7%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG--------------V 583
           + +  ++ +     IS +  +  I  +      YG   K  +                  
Sbjct: 1   MKLNVIKQKTLWWSISSILILVGIASMAFSWQQYGAPIKPSLDFVGGTRLQLSRDCTVAN 60

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               P+D+S VR  L S  +   S Q   GE    + ++ +  D   + R+   +   I 
Sbjct: 61  NCTDPIDISEVRQVLNSQDLTGSSIQ-LSGEDQQSIVVRTRNLDVDQRDRLQSALSDTIG 119

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            I P   +   + VGP + ++L+  G++ ++++   +  Y+ +RFK+ +A+ AI  L+ D
Sbjct: 120 TIDP--ALTKNDTVGPVLGKQLLTSGLLSLLVAFALIAAYLSLRFKFDYAILAIVALLHD 177

Query: 704 ITKTLGFFALF----GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           I  TLG F++     G E +   + A+LT++G+SVND VV+YDR+R+ ++      S   
Sbjct: 178 ILITLGLFSILSLVTGYEADSLFIVALLTIVGFSVNDTVVIYDRIRETLQRTPER-SINQ 236

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++++++N TLGRS+ T++   +++L + ++GG  +  FA+ +  G +  A SSIF+A+ +
Sbjct: 237 IVEEAVNSTLGRSINTTLTTVLTLLSIVIFGGDTLKFFALALITGFLAGAYSSIFVASTL 296

Query: 820 LLFIYDWRA 828
           L +      
Sbjct: 297 LAWWRSRSE 305


>gi|260429903|ref|ZP_05783878.1| acriflavin resistance protein [Citreicella sp. SE45]
 gi|260418826|gb|EEX12081.1| acriflavin resistance protein [Citreicella sp. SE45]
          Length = 1025

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 63/525 (12%), Positives = 146/525 (27%), Gaps = 39/525 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I  IG +      L +  +   P                   +     
Sbjct: 9   RRPVLATVLNLLIVLIGAMA-----LSRLPVRELPQVDTAEVT---------VRVSYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D ++  +    +   + L           + +++  L F  SR  ++  + V   +  
Sbjct: 55  APDVIDNQVASVIEGALAGLSGLQSMETESERGRSRTVLIFEPSRDIDSATNDVRTAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L        +    ++   +V    +        +E S    R   D++       
Sbjct: 115 VVGDLPDGADVPRVEKNDDEGDPVVRLALSSPG--MTPLELSDYADRFLTDRLARLPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D   +     T+  ++                         N  
Sbjct: 173 NAQIFGERARAMRIWLDAGLMAAHGVTSGDITAALQA--------------------NNV 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +      +G       A            ++  + G R         I +         
Sbjct: 213 ELPAGEIETGARQLQLLARTRFTRADEFARLAIRDDGERPLRLGDVARIEEGAERSDSMF 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +     +        +R          V          +   
Sbjct: 273 RSDGATGLGIGIKAQAQANTVAISDAVRAEIEAIRPTLPEGMSLRVTTDEAAFIRTTLDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV  V+F+ +   +  LV   +I ++++     + LLG +L + S+  ++
Sbjct: 333 VAQVFFEAVLLVTAVIFLFLGSARLSLVPVVTIPVSILGAALAMLLLGFSLNVLSLFAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I+       S   +   G ++    +  +    +   + + F  
Sbjct: 393 LAIGLVVDDAIVVLENIQRHRAMGLSRAEAARQGANQVNFAVIATTAVLIAVFLPVSFME 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           G   +    F I + +++ +S   A+++   +   ++  +   ++
Sbjct: 453 GEIGKLFGEFGIVLAVAVSVSGLVALTMAPVLASRLLPREGKTNL 497



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 77/207 (37%), Gaps = 9/207 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    +E ++  + E + L    +          E+ +     V++    + +++   
Sbjct: 296 SDAVRAEIEAIRPTLPEGMSLRVTTDEAAFIRTTLDEVAQVFFEAVLLVTAVIFLFLG-- 353

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                +L  + T+ + I        L G   N+ ++ A++  IG  V+D +VV + +   
Sbjct: 354 -SARLSLVPVVTIPVSILGAALAMLLLGFSLNVLSLFAMILAIGLVVDDAIVVLENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
            +     +S  +   +  N+     + T+       LP++   G +      F I +A  
Sbjct: 410 QRHRAMGLSRAEAARQGANQVNFAVIATTAVLIAVFLPVSFMEGEIGKLFGEFGIVLAVA 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           + V+   ++ +A  +   +     K  
Sbjct: 470 VSVSGLVALTMAPVLASRLLPREGKTN 496



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 77/226 (34%), Gaps = 15/226 (6%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              +           +A    L  V  ++           +     + +      G + ++
Sbjct: 794  TRYNRIHSVGVEADLAPGADLAQVMDRVETAARALPAGASLAWDGQAADFARASGGMAMV 853

Query: 675  I--SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
               +   + + +  +F+ +   L  + T+ L +        L G   N+ +   ++ L+G
Sbjct: 854  FGMALAIVFLVLAAQFESFRTPLVIMLTVPLGLGGAALTLWLTGQSVNVFSQVGLVLLVG 913

Query: 732  YSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
                + +++ +   ++R+         + R+   +     L     T++A  +  +P+A+
Sbjct: 914  LMAKNGILMVEFSNQLREE------GHALREAAIEGAVTRLRPVTMTTIATILGAVPLAL 967

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                G     +  + +  G+  A   ++F+   I L I     +  
Sbjct: 968  ATGAGAESRVAIGMVITGGLAFAFVLTLFVTPVIYLLIEGVLPRRR 1013


>gi|160888337|ref|ZP_02069340.1| hypothetical protein BACUNI_00750 [Bacteroides uniformis ATCC 8492]
 gi|270294697|ref|ZP_06200898.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317477695|ref|ZP_07936889.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
 gi|156862014|gb|EDO55445.1| hypothetical protein BACUNI_00750 [Bacteroides uniformis ATCC 8492]
 gi|270273944|gb|EFA19805.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316906129|gb|EFV27889.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
          Length = 1063

 Score =  164 bits (415), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/694 (10%), Positives = 184/694 (26%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVFSAVISITIVILGII-----GLFTLPVEQYPDIAPPTIM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +     +  IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSTASNAGSVSITVYFKQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +               +  I      QI       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSILQMFSLYSPDDSYDENFLANYISINLKPQILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +     P  + Q     + ++      N       FG            
Sbjct: 175 DMMIMG-GDYSMRIWMKPDVMAQYKLIPSDVTAVLAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                +I           
Sbjct: 234 YTGRLI----------------TPEEFGDIVIRSTEDGEVLKLKDIADIELGKDSYAYKG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +          L    R              +      S   
Sbjct: 278 TMDGHPGISCMVFQTAGSNATEVNRQIDRLLEEARKDLPKGVELTQMMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I +++I T A +S+ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDIRSTLIPLVGIVVSLIGTFAFMSVAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 GGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLKPYINEDGTEKNNFASRFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        I + F++ R+ G  +  L  +  + L+ T       D   G     +
Sbjct: 518 NTAFEAVVEKYKKIVLLFIKRRWLGWSLLALSVVLLVFLMNTTKTGLVPDEDQGTLFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +  P       +++       +           +       G   +   ++  +K     
Sbjct: 578 STAPGSSLKTTNDIIDRVEKRLEDLPQKLHLQKVAGYGLLSGQGNSFGMIIVKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    +  +    I
Sbjct: 638 TAKEDQVQAVVNQIYARTADIKDATVFAIAPGMI 671



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 88/201 (43%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +    R+LE  +K + + V L+ + ++         E+++  I  +I+  + + +++   
Sbjct: 301 NRQIDRLLEEARKDLPKGVELTQMMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  +++ +  T  F ++ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 359 -DIRSTLIPLVGIVVSLIGTFAFMSVAGFSINLITLFALVLVIGTVVDDAIVVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++  GG+       F + MA  
Sbjct: 418 FDVGYKSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +   +  
Sbjct: 476 VGISAINALTLSPALCALLLK 496



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 72/253 (28%), Gaps = 12/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E  + 
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMFNSIAVNAMPAEGYSTGDAIRAVQETAEI 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I  GI  ++I  I   +Y      +      I  +
Sbjct: 850  ALPKGYGYDFGGITREESQQSGTTVIIFGICILMIYLILSALY----ESFLIPFAVILAV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRD 759
               +  +  F  + G+E N+     ++ LIG      +++     +         +    
Sbjct: 906  PAGLMGSFLFARIAGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERRKAGMGLIA 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +        + T +     + P+ V    G +   S    +  G+ +   + +FI 
Sbjct: 962  SAVSAAKARFRPILMTVLTMIFGLFPLVVATGVGANGNRSLGTGVVGGMFIGTLALLFIV 1021

Query: 817  APILLFIYDWRAK 829
              + +     + +
Sbjct: 1022 PVLFISFQWLQER 1034


>gi|270295128|ref|ZP_06201329.1| multidrug resistance protein mexB [Bacteroides sp. D20]
 gi|270274375|gb|EFA20236.1| multidrug resistance protein mexB [Bacteroides sp. D20]
          Length = 1059

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 73/621 (11%), Positives = 162/621 (26%), Gaps = 56/621 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P               + +  +
Sbjct: 8   KRPVMAISISVLILVIGLISLF-----TLPVEQYPDIAPPT-------------VYVSAN 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVT 116
                    L      L   +   E +   S          I + F      +  A  V 
Sbjct: 50  YTGADAEAVLNSVIMPLEESINGVENMMYISSTATNAGSATIQVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 110 NRVSKAQGLLPAEVTKIGVTTQKRQTSFLQIGALVSTDGRYDQTFLANYLDINVIPQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDVTAVLGEQNIEAPTGSLGENSKNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +   +            ++      
Sbjct: 229 Q----------------FTMKYRGRLKSVEEFQNTVVRSQSDGSVLRLKDVADVELGTLT 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +R         +    +     
Sbjct: 273 YGFRSEMDSKPAVLFMMFQTAGSNATAVNKQITAQIDEMRKSLPEGTEFVTMMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 333 ASIHNVVETLVIAIILVILVVYFFLQDFKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIISCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG +      F +TM  ++ ISM +A+++  A+   ++R         +   R  
Sbjct: 453 PVTFMGGTSGVFYTQFGVTMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 533 LIPDCI------------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
              +                           ++    +    +  T       + +G I 
Sbjct: 513 AAYNASFNAVLGKYKKGVMFFIHHRWMVWTSLAATVVLLVYLMSTTKTGLVPQEDQGVIM 572

Query: 581 LGVLANRPVDLSVVRSNLESL 601
           + V  +    L      +  L
Sbjct: 573 VNVSTSPGSTLEETTKVMSKL 593



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/364 (11%), Positives = 112/364 (30%), Gaps = 9/364 (2%)

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+ +    L    G   + F        +I     I  V  +M     Y     +    +
Sbjct: 135 TSFLQIGALVSTDGRYDQTFLANYLDINVIPQIKRIEGVGDVMELGDTYSMRIWLKPERM 194

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +++ L+P  +              S+  +  ++              +      V +   
Sbjct: 195 AQYGLVPSDVTAVLGEQNIEAPTGSLGENSKNVFQFTMKYRGRLKSVEEFQNTVVRSQSD 254

Query: 589 VDL---SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             +     V              +         +  Q    ++ A  + +     ++ + 
Sbjct: 255 GSVLRLKDVADVELGTLTYGFRSEMDSKPAVLFMMFQTAGSNATAVNKQITAQIDEMRKS 314

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
           +P  T   T +         I   +  ++I+ I +++ ++     +   L    ++I+ +
Sbjct: 315 LPEGTEFVTMMSSNDFLFASIHNVVETLVIAIILVILVVYFFLQDFKSTLIPSISIIVSL 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T       G   N+  + A++  IG  V+D +VV + ++          S       +
Sbjct: 375 VGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKFDAGYK--SPYLATKDA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + +     +  +       +P+   GG+       F + MA  + ++  S++ +   +  
Sbjct: 433 MGDVTMAIISCTCVFMAVFIPVTFMGGTSGVFYTQFGVTMATAVGISMISALTLCPALCA 492

Query: 822 FIYD 825
            +  
Sbjct: 493 IMMR 496



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 74/254 (29%), Gaps = 9/254 (3%)

Query: 579  IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
                        +S   +  + L     +  N        V           Q  + E+ 
Sbjct: 785  NMFVRNGTEMAPVSQFVTLNKVLGPETANRFNLYSAIAANVNPAEGYSSGEVQKVIAEVA 844

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            ++ +                     + +   I  + I  I  LI   +   +      I 
Sbjct: 845  EQTLPLGYGYEYGGMAREEANTGGAQTVF--IYAICIFLIY-LILACLYESFLIPFAVIF 901

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            ++   +  +  F  + G+E N+     V+ LIG      +++ +     ++     +   
Sbjct: 902  SVPFGLMGSFLFAKVLGLENNIYLQTGVIMLIGLLAKTAILITE---YAIERRRKGMGIV 958

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            +    +    L   + T +     +LP+      G +   S    +  G+++   + +F+
Sbjct: 959  ESAYSAAQVRLRPILMTVLTMIFGMLPLMFSSGAGANGNSSLGTGVVGGMLIGTLALLFV 1018

Query: 816  AAPILLFIYDWRAK 829
                 +     + K
Sbjct: 1019 VPVFYIIFEYLQEK 1032


>gi|91977152|ref|YP_569811.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB5]
 gi|91683608|gb|ABE39910.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB5]
          Length = 1049

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 83/600 (13%), Positives = 168/600 (28%), Gaps = 43/600 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC  G+L      LP   + ++P   P               + +    
Sbjct: 8   RPIFAWVVAIFICLAGVLA-----LPFLPVAQYPIIAPP-------------SISIATVY 49

Query: 63  DDFVNGF----LQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                      +    +E  +          +     + +I  SF         +  V  
Sbjct: 50  PGASTQNLYYGVTRLIEEELNGAAGILSYESTSDTTGEVEIIASFQPGTDISKASVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ +  +L    ++  +  T      +              I       R  + ++   
Sbjct: 110 RIKRIEPRLPEPVRQEGIAITEASSAILQFVTLTSSDNSLDEIGLGDVATRYVLPELRRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L  L  T   +       N        GV+      
Sbjct: 170 AGVGRVRLF-STERAMRIWLDPDKLLGLGLTAQDVDAAIEAQNAPVASGQLGVQPTPTRQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q +V  K ++                 +    +                 +       
Sbjct: 229 RLQNMVLVKGQL-------------DSLDEFGDIVLRANPNGSTVRLADVARLEVGGLSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L A   P     V          
Sbjct: 276 SFSTRLDGRPAAAVAVQLAPSGNALATSAAVKARMTELAAFFPPGVKYEVSYDVTPVIAA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ ++    + + ++ T A+L  LG ++ + ++
Sbjct: 336 SVKKVLLTLGEAVVLVFLVMFLFLQNIRYTMIPTIVVPIALLGTCAVLFALGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   + +    +    +    +  +   V 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLSPRAATEKAMEQITGAVIGITLVLMAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--KKMKSIDINPLSRF 531
           + FF G      + F+ +M +SI  S F A+S+  A+   +++   K            F
Sbjct: 456 MAFFPGSVGIMYKQFSASMVVSIGFSAFLALSLTPALCATLLKPVEKGHGHATRGFFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
               D     + RA  W V     F +  + LL   G        G + +       VD+
Sbjct: 516 NGRLDRATRSYGRATRWMVARGGRFMLVYLALLVGVGFALWRLPGGFVPIDDQGFVMVDV 575



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V            S +        +       G+++A +  ++    ++    P 
Sbjct: 260 VRLADVARLEVGGLSYSFSTRLDGRPAAAVAVQLAPSGNALATSAAVKARMTELAAFFPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                       +    ++K ++ +  + + + + +++  +   + +     + + +  T
Sbjct: 320 GVKYEVSYDVTPVIAASVKKVLLTLGEAVVLVFLVMFLFLQNIRYTMIPTIVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  V+D +VV + +     +    +S R   +K++ +
Sbjct: 380 CAVLFALGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMSEEGLSPRAATEKAMEQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GSV      F+  M   I  +A  ++ +   +   + 
Sbjct: 438 ITGAVIGITLVLMAVFVPMAFFPGSVGIMYKQFSASMVVSIGFSAFLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 82/254 (32%), Gaps = 11/254 (4%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                N     K    L           V  S+   +       Q    +    VRL   P
Sbjct: 767  IVQANDDKRVKPEDLLSYSVKNSTGEMVPFSSFARVAWVVGPTQVVGFDGYPSVRLTGNP 826

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI- 684
                +    +  +++ +  +            G  +  +L        ++    + +++ 
Sbjct: 827  APGYSSGDAIAEMERLMRALPGGF---GYTWTGQSLQEKLA-GSQAAFLLGLSILFVFLC 882

Query: 685  --WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
               +   W      +  + L +  ++    L G+  ++     ++T+IG S  + +++ +
Sbjct: 883  LAALYESWSIPFAVMLAVPLGVVGSVAAAMLRGLPNDVYFTVGIVTIIGLSAKNAILIIE 942

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
              ++   L        +    +        + TS+A  + V+P+ +  G+   S    + 
Sbjct: 943  FAKE---LRANGTPLVEATITAAELRFRPIIMTSLAFILGVVPLVIASGASGASQQ-ALG 998

Query: 803  FGIVVAASSSIFIA 816
             G++    ++  +A
Sbjct: 999  TGVLGGMITATVLA 1012


>gi|262189654|ref|ZP_06048034.1| RND multidrug efflux transporter [Vibrio cholerae CT 5369-93]
 gi|262034465|gb|EEY52825.1| RND multidrug efflux transporter [Vibrio cholerae CT 5369-93]
          Length = 609

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/619 (9%), Positives = 167/619 (26%), Gaps = 40/619 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVAALVLSMLLCVFGVVS-----FTKLAVREMPDIESPVV---------SVSTRYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  SATIIESQITSVLEDQLAGISGIDEITSVSRNGMSRITVTFELGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPQVFKNNGSGQASVYINLSSSE--MDRTQLTDYIERVLLDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +     P  +      T+ +S      N    G                
Sbjct: 173 SVDVSGGLYKVMYVRIKPELMAGRGVATSDISDALNKENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDSTVMSVRTARGYQSAEDFEYLVVKRASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGIVNVSMGILPQSDANPLEVAKRVHEEVDKVQQFLPKGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQLRATLIPAVTVPVSLISAFMAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + ++++ S   A+++   +   +++                  L   
Sbjct: 454 GMVGLLFTEFSVLLAMAVIFSSLIALTLTPVLGSKLLKANVKPGRFNQLIDRLFARLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R+      ++ +           +   +       +     R  D +    
Sbjct: 514 YRQVVSRAIRWRWAAPVVIAACIGGSYGLMQLVPAQLTPSEDRGVIFSFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEK 615
              ++ + +       G+ 
Sbjct: 574 MAANMDLVEQRLMPLLGQG 592



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDGTPIYLKDVADVFIGAENENSTFKSDGIVNVSMGILPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQQFLPKGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQLRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISAFMAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIERGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMAVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKLLKANVKPGR 498


>gi|262191676|ref|ZP_06049853.1| protein-export membrane protein SecF [Vibrio cholerae CT 5369-93]
 gi|262032465|gb|EEY51026.1| protein-export membrane protein SecF [Vibrio cholerae CT 5369-93]
          Length = 300

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 144/279 (51%), Gaps = 6/279 (2%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R+    IS+L  + S+      GLN G+DF GG+    + N  V  S +   L+ +    
Sbjct: 13  RYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGES 72

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           +S      E  +++R         A+      +  ++  I     I +  +VG ++ +EL
Sbjct: 73  VSATPSGEEGRWVIRYPL-----AAEDATPVDIATELHHISDQVQIVSNSMVGSQVGQEL 127

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           I +G + ++I  +++L Y+  RF+W  A GA+  L+ D+   LGFFA+  +EFNLT  AA
Sbjct: 128 IDQGGLALLICLLSILGYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAA 187

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           VL ++GYS+ND +++ DR+R+ + L        D+ D++I  T  R++ TS    +++  
Sbjct: 188 VLAVLGYSLNDSIIISDRIRE-LLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISA 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + GG+ +  FAI M  GI+    SSI I   +  ++ 
Sbjct: 247 LWLMGGAPLQGFAIAMFIGIISGTWSSISIGTVLPEWLG 285


>gi|254787918|ref|YP_003075347.1| RND transporter HAE1 family [Teredinibacter turnerae T7901]
 gi|237683949|gb|ACR11213.1| RND transporter, HAE1 family [Teredinibacter turnerae T7901]
          Length = 1047

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 76/686 (11%), Positives = 181/686 (26%), Gaps = 40/686 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +    +  +G +      L    + ++P+  P   +            V    
Sbjct: 8   QRPVLAGVFAIALMLLGGIA-----LRFLPVSQYPNISPPMVL---------VEAVYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               V   +    ++    L                ++TL F  +   E    +V   + 
Sbjct: 54  SAKVVENSVTQILEQSLKGLDGLLYFDSVSTSDGVVELTLVFDLNTDVEVAQVRVQNKVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            ++ +L    ++  +   + +   ++++  +         + +  I     D +      
Sbjct: 114 QISYRLPAQVQQRGITVNSLQNSFLMVAVFHDASGRLSDSDIANWISSSMEDPLSRLPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP +L       + +       N        G R  R+     
Sbjct: 174 GAIRNFGAP-YAMRIWLDPHQLAAHQLMPSDVEEAIYAQNTEVPVGELGARPHREGQQLN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V     +                      +                 I          
Sbjct: 233 VTVTAMSRL-------------QSVDDFASIVLKTRAQGDVVRLGDVARIEIGRESYAST 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L     +          +   T        A LR            E        S  
Sbjct: 280 SRLNGKPASGLAMMMAPGANAMATASAVKNRIAQLRHTFPAGVDVFYPEDASRFVKRSIR 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T A    LV++V+++ +   +  L+   +I + ++ T  +++LLG +L   ++  +
Sbjct: 340 DVLRTLAEALVLVVLVMYLFLQNWRVTLIPTLTIPIVLLGTCCVIALLGYSLNTLNLFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSL----DMGFSRAYSTIFDSNITALIATVV 476
           VL IGL VD  I+V E +     + +    S         +R    I        +    
Sbjct: 400 VLAIGLLVDDAIVVVEHVERTMMQEKLDARSATLKSMQHMTRVLIGIALVLAAVFLPMAA 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R F++T+  ++ +S   A+++  A+   +++       +    +   L   
Sbjct: 460 FPGSVGVIYRQFSVTLVTAMALSAVVALTLTPALCAALLKPADGHKRNPVTRAFNRLFSV 519

Query: 537 CIAIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA--NRPV 589
                  R      R        L  + S    +       I       + V        
Sbjct: 520 MKLRYHHRVTALLKRPLRFSAIYLVLLGSTWWAYQSLPTAFIPEDDQGTVMVRYALPEGA 579

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             +  R  + +++   +  +  +    + V      G           +K         +
Sbjct: 580 SYTRTRELVRTVENYFMQHEAKNIAGIYTVSGFSFSGSGQNAGIGFVPLKDWSQRQGQEN 639

Query: 650 TIQNTEIVGPKISRELIRKGIVGVII 675
           + Q       +   +L+   +  +++
Sbjct: 640 SAQAIAARANRALADLVEGKVFAMVL 665



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 54/133 (40%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L    T+ + +  T    AL G   N   + A++  IG  V+D +VV + +     
Sbjct: 363 WRVTLIPTLTIPIVLLGTCCVIALLGYSLNTLNLFAMVLAIGLLVDDAIVVVEHV--ERT 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  R    KS+       +  ++      LPMA + GSV      F++ +   + 
Sbjct: 421 MMQEKLDARSATLKSMQHMTRVLIGIALVLAAVFLPMAAFPGSVGVIYRQFSVTLVTAMA 480

Query: 807 VAASSSIFIAAPI 819
           ++A  ++ +   +
Sbjct: 481 LSAVVALTLTPAL 493



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +E +   +       +  + +      S  L+        +S + + + +   ++ W 
Sbjct: 838  ERIETLAATLPGTNYEWSGLSYQDKISSGSATLLYT------VSILFVFLCLAALYESWS 891

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  +  + L +   +    L G   ++     VLT IG S  + +++ +   +     
Sbjct: 892  IPLAILLVIPLGVLGAVVLVMLSGQSNDIFFQIGVLTSIGLSARNGILIVE-FAE--HAI 948

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVA 808
                S      K+ +  L   + TS++    V+P+ V  G       +  + +  G++ A
Sbjct: 949  QRGGSAFHATRKAASLRLRPILMTSLSFGAGVVPLIVATGPAANAQHAIGLAVLGGVITA 1008

Query: 809  ASSSIF 814
               +IF
Sbjct: 1009 TLLTIF 1014


>gi|255526639|ref|ZP_05393545.1| acriflavin resistance protein [Clostridium carboxidivorans P7]
 gi|296186098|ref|ZP_06854503.1| heavy metal efflux pump, CzcA family [Clostridium carboxidivorans
           P7]
 gi|255509672|gb|EET86006.1| acriflavin resistance protein [Clostridium carboxidivorans P7]
 gi|296049366|gb|EFG88795.1| heavy metal efflux pump, CzcA family [Clostridium carboxidivorans
           P7]
          Length = 1015

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/513 (11%), Positives = 152/513 (29%), Gaps = 40/513 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   ++ ++   +  +G +           +D+ P                   +    
Sbjct: 8   LKRPVFITVIIIALLALGAIS-----YINLPMDQLPDVDMPTV---------SVRITQNG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            + D +   +    ++  S +        ++ +  +  T+SFA  +       +V   L 
Sbjct: 54  ADPDQIESKITKKVEDAVSQISGVKHVSSTIIEGVSSTTISFALEKPSAEAMQEVKDKLS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L  D    ++        +I               E S  +    + ++      
Sbjct: 114 NIRNSLPRDIDDPVVSKFDASASAIFSFAI---TGSMSNKELSQIVDDNLVKKLQTINGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S     ++  + +  ++  L  T ++++                           
Sbjct: 171 GAVNTSGEEEKEVHIKLNKEKMNSLNITVSELTNGLSAD--------------------N 210

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +      SG        N   K     +++   +             +          
Sbjct: 211 INLSSGKVSSGDTQISLKTNSSIKKVDDFLNVLITKRNGSEIKLEDIATVEDGSKEKSSL 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          ++  +     +        ++          +   N  + + S  
Sbjct: 271 SFYNGKEAIGIDIVKQSNSNTVQVAKDVKKEIESIKKSLPSGVKINLVADNSTSIIDSVK 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T      L +IV+F+ +       ++  SI +++I T A++  +  TL   S+  +
Sbjct: 331 DVQQTMIEGCILAVIVVFIFLKNVASTAISAVSIPVSIITTFAVMKFMNFTLNTVSLMAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL +D  I+V E I       +S   +   G S     +  + +  +   + +   
Sbjct: 391 SLAVGLLIDDAIVVIENIVRHLNMGKSPIQAAKDGTSEIGLAVIATTLAIVAVFLPIAMI 450

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAM 510
            G   +    F +T+  S+L+S+F A ++V  +
Sbjct: 451 NGMVGKFLVQFGLTVAASVLVSLFVAFTLVPML 483



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 80/251 (31%), Gaps = 19/251 (7%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG--EKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       +        SL   +          +++    +Q           + + + 
Sbjct: 251 EIKLEDIATVEDGSKEKSSLSFYNGKEAIGIDIVKQSNSNTVQVAKDVKKEIESIKKSLP 310

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +   +      +       + + +I   I+ VI+  I                 +  +
Sbjct: 311 SGVKINLVADNSTSIIDSVKDVQQTMIEGCILAVIVVFI-------FLKNVASTAISAVS 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T           N  ++ A+   +G  ++D +VV + +   ++      S   
Sbjct: 364 IPVSIITTFAVMKFMNFTLNTVSLMALSLAVGLLIDDAIVVIENI---VRHLNMGKSPIQ 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
                 +E     + T++A     LP+A+  G V   +  F + +A  ++V    S+F+A
Sbjct: 421 AAKDGTSEIGLAVIATTLAIVAVFLPIAMINGMVGKFLVQFGLTVAASVLV----SLFVA 476

Query: 817 APILLFIYDWR 827
             ++  +    
Sbjct: 477 FTLVPMLSAKS 487



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 69/181 (38%), Gaps = 10/181 (5%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRF 688
           AQ+   +    K+    P          G +        G+   +++  + + + I  +F
Sbjct: 806 AQSNFTKAFSNKLKSEAPTPKDIKLSAGGSQDQMAESMGGLAQALLMGVLFIFLVIAAQF 865

Query: 689 KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           + +    AI  L L +        L     E ++ +   V+ L+G    + +++ D  ++
Sbjct: 866 ESFVDPLAIL-LSLPLALIGAILGLLVGNKELDMMSAIGVIMLMGLVTKNAILLIDFAKQ 924

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
           N   Y+  ++ ++ +  + +  L   + TS+A    ++P A+    G       A  +  
Sbjct: 925 N---YSKGMNLKEALINAGHTRLRPIIMTSLAMIFGMIPTAIASGAGSEQRAPMAFAIIG 981

Query: 804 G 804
           G
Sbjct: 982 G 982


>gi|312129628|ref|YP_003996968.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Leadbetterella byssophila DSM 17132]
 gi|311906174|gb|ADQ16615.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Leadbetterella byssophila DSM 17132]
          Length = 1046

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 73/671 (10%), Positives = 184/671 (27%), Gaps = 35/671 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ ++I  +G L      + Q  + +FP                   +      
Sbjct: 8   RPVLAIVISALILFVGGLA-----MKQLPVSQFPQIASTTV---------SVSIAYPGSS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQG 121
            D +     +  +   + +              +  + + F            V   +  
Sbjct: 54  ADVLVKSSLITLENAINGVPGMRYISSDATSAGEAVVNVIFEPGTDPNEAMVLVKNRVDQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L    +K  ++ T  +   ++                      + I +I       
Sbjct: 114 VMTLLPELVQKEGVIVTPIQPSMLMYVNVYSKDEKIDEKFLYNYATVKMIPEISRVPGIA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +P R+R    +  ++       +   +    G      +   +Y
Sbjct: 174 KAQILGSRRYAMRVWLNPERMRAYSISVEEVMKALEEQSIIGRPGRIGQSSGLAAQSLEY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           ++  K ++              K  +    I       +         +           
Sbjct: 234 VLTYKGQL-------------NKPEEYENVIVRANPEGQIIHLKDIGKVELGSEFFDIYS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +       +    I+   +    +     P     +          S   
Sbjct: 281 NLDGYPAASIMLKQTYGSNAKEVIDQVKVKLKEMEKDFPPGVEYKISYDVSKFLDASIEQ 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   K  L+   ++ +++I    +L + G ++ L ++  +V
Sbjct: 341 VVHTLRDAFILVALVVFVFLGDWKSTLIPILAVPVSLIGAFFVLQVFGMSINLVTLFALV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +  +  +   + + ++          I    +  +   + + F 
Sbjct: 401 LAIGIVVDDAIVVVEAVHAKMHEKNLTPYYAVKEVMKEISGAIIAITLVMVSVFLPISFM 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSRFFLI 534
            G      R FAITM  SI++S   A+++   +   +++  +  S   +         L 
Sbjct: 461 SGPVGTFYRQFAITMASSIVLSAVVALTLTPVLCAILLKKHEGHSNGLMSKFNQLFDRLT 520

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                +         +  ++L   C+  ++    L  G              +    S +
Sbjct: 521 GKYTKVLTSIVSRKALTWAVLLIFCAGIVVQNKFLAGGFIPNEDQGTIYAIIQTPPGSTL 580

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                  +      +  DG ++      Y+       +     +           T+   
Sbjct: 581 ERTNHVSRELQKICKEVDGVESVTSLAGYEIMTEGRGSNAGTCLINLKDWSEREHTVLEI 640

Query: 655 EIVGPKISREL 665
                  S+ L
Sbjct: 641 MEELEHKSKNL 651



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 100/260 (38%), Gaps = 13/260 (5%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + V AN    +  ++   +     +      + +      +  +         V++ 
Sbjct: 247 YENVIVRANPEGQIIHLKDIGKVELGSEFFDIYSNLDGYPAASIMLKQTYGSNAKEVIDQ 306

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
           VK K+ E+           +   +S+ L   I + +  +  + I + + +++    W   
Sbjct: 307 VKVKLKEMEKDFPPGVEYKISYDVSKFLDASIEQVVHTLRDAFILVALVVFVFLGDWKST 366

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +        +FG+  NL  + A++  IG  V+D +VV + +    K++  
Sbjct: 367 LIPILAVPVSLIGAFFVLQVFGMSINLVTLFALVLAIGIVVDDAIVVVEAVH--AKMHEK 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWG--GSVIGSFAIPMAFGIVVA 808
           +++    + + + E  G  +  ++   +  + +    + G  G+    FAI MA  IV++
Sbjct: 425 NLTPYYAVKEVMKEISGAII--AITLVMVSVFLPISFMSGPVGTFYRQFAITMASSIVLS 482

Query: 809 ASSSIFIAAPILLFIYDWRA 828
           A  ++ +   +   +     
Sbjct: 483 AVVALTLTPVLCAILLKKHE 502



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/214 (10%), Positives = 71/214 (33%), Gaps = 6/214 (2%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            ++  P D       +  +++   + +P       E +    +        V +++     
Sbjct: 819  IRGLPADGYTTADAISAIQETALKTLPNGYKIAWEGLSYDEANRGNESIYVFLVVLVFVY 878

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++       +   LG + +L   +  +     + G+  ++ A   ++ L+G    + V++
Sbjct: 879  MVLAAQYESFLLPLGVVMSLPAGVFGSFFLLKMMGLANDIYAQVGLIMLVGLLGKNAVLI 938

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSF 797
            ++     ++      S  +   +         + TS A    ++P+ V  G   I   + 
Sbjct: 939  FEIA---IQKRQAGSSIYEAAIEGAKARFRPILMTSFAFIAGLVPLLVSQGAGAIGNKTI 995

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  G++      + +   +   + +W     
Sbjct: 996  GSSALGGMLFGTIFGVVVIPGLYYLVANWADGRK 1029


>gi|312129961|ref|YP_003997301.1| acriflavin resistance protein [Leadbetterella byssophila DSM 17132]
 gi|311906507|gb|ADQ16948.1| acriflavin resistance protein [Leadbetterella byssophila DSM 17132]
          Length = 1028

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/590 (12%), Positives = 171/590 (28%), Gaps = 41/590 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I   G++           +  FPS  P                     
Sbjct: 9   KRPVLAIVMNLLIMLFGII-----GYNFLGVREFPSVDPPIV---------NVSASYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + ++       S  Q ++ IT+ F      E   + V   +  
Sbjct: 55  NADIIESQITEPLEKALNSVEGIRSVSSSSNQGRSNITVEFNLGMDMEKATNDVRDKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D     +V   +     +L    I     + +E S         ++   E   
Sbjct: 115 AVGQLPRDLDGVPIVRKADANSDAIL-AFYIQSDKRNILEMSDFAENTVAPRLETIEGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +P+++     TT  +                        +    
Sbjct: 174 EIRIWGMKRYAMRIWMNPNKMAAFGVTTQDVRSAL--------------------ERENV 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                    ++ +   ++    +G                  +    
Sbjct: 214 ELPSGKLQGAATELVVKTIGRFQSVEDFNNMIVRNVGETNVRLRDIGYAELGPENLETSM 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +N      +   +     E A    A +           V          S + 
Sbjct: 274 RLNGVPMNGIAIQPQPGANYLDIAEEAYKRKAEIEKTLPDDISMGVIFDTTTFIKQSVTE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+I++F+              I ++++ T  ++ LLG ++ + ++  IV
Sbjct: 334 VAETILIAIVLVVIIIFLFFRDWIVAFRPLIDIPVSLVGTFFIMFLLGFSVNVLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I ++  +  +   +   G +     +  ++IT     + + F  
Sbjct: 394 LATGLVVDDGIVVTENIYKKIEEGMNPIEASIKGSNEIIFAVISTSITLAAVFLPVIFME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP--- 535
              G     F + +  ++LIS F ++++   +  ++ R +  ++        +F      
Sbjct: 454 GFVGKLFMEFGVVLASAVLISAFVSLTLTPMLNAYLNRKEIKRTRFYEATEPYFEKMETS 513

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
              ++     + W V   ++  +  +    +   N          L +  
Sbjct: 514 YRSSLSNFLHKKWIVAPIMVVVLALLFFFGSKLNNELAPLDDRSSLSLNF 563



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 6/148 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  A   +  + + +  T     L G   N+  + A++   G  V+D +VV + +   
Sbjct: 354 RDWIVAFRPLIDIPVSLVGTFFIMFLLGFSVNVLTLLAIVLATGLVVDDGIVVTENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
            K     ++  +   K  NE +   + TS+      LP+     + G +   F + +A  
Sbjct: 411 YKKIEEGMNPIEASIKGSNEIIFAVISTSITLAAVFLPVIFMEGFVGKLFMEFGVVLASA 470

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++++A  S+ +   +  ++     K  R
Sbjct: 471 VLISAFVSLTLTPMLNAYLNRKEIKRTR 498



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 74/191 (38%), Gaps = 7/191 (3%)

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
               I + +    ++       +   E     +    ++ I + + +  +F+ +   L  +
Sbjct: 825  MDAIRDELNDPEVRTALTGSSRDFAESSSNTLFSFGLALILVYLILAAQFESFVDPLIIM 884

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             T+ L I   +    LF    N+ +   ++ LIG    + +++ +      +L    +S 
Sbjct: 885  CTVPLAIAGAVLSLWLFDQTINIFSQIGMIMLIGLVTKNGILIVEFAN---QLRERGLSK 941

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF 814
             +   ++    L   + T++A     LP+A      G+   S  I +  G+VV+   +++
Sbjct: 942  AEAALEAAVLRLRPILMTTLATAFGALPIAAALGAAGTSRRSMGIVVIGGLVVSLILTLY 1001

Query: 815  IAAPILLFIYD 825
            +   + ++   
Sbjct: 1002 VIPAMYIYWSK 1012


>gi|91214625|ref|ZP_01251598.1| putative AcrB/AcrD family RND transport protein [Psychroflexus
           torquis ATCC 700755]
 gi|91187052|gb|EAS73422.1| putative AcrB/AcrD family RND transport protein [Psychroflexus
           torquis ATCC 700755]
          Length = 1045

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 75/685 (10%), Positives = 172/685 (25%), Gaps = 46/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G+L           ++ +P   P     L                
Sbjct: 8   RPVLSTVISIIIVMLGVLSI-----TNLPVEEYPDIAPPTIKVL-------------ASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +     +   +   EG+   +     N   +IT+ F  +   +  A  V  
Sbjct: 50  PGANAETVLESVIIPIEEQINGVEGMTYITSTASNNGTAEITVYFDQNTDADIAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   N  L  + ++  + T  ++  +++      D     A      +    I  +   
Sbjct: 110 RVGRANPLLPQEVRQTGVTTQKQETSALMFLSMYTDSEDYDATFIQNYLKINVIPAMQRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +         +    +     P +L       + ++      N        G     + +
Sbjct: 170 KGVGDVSVFSQQDYAMRVWLKPEKLAAYNLIPSDITAALQEQNLEAAAGSLG---QNNGE 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y++                    +  +    +                 I       
Sbjct: 227 AFSYILTYSGR-------------FKEAKQYGDIVIKALGDGEFLRLNDVATIELDAQSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +    IE        +           V          
Sbjct: 274 SSNAESLGKPAVFMGIFQTKGSNAQEIIEDIKTTLETVEKNLPEGLHIFVPYDTSLFLNA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ +++I T   L++ G ++ L ++
Sbjct: 334 SIDKVVTTLLEAFLLVFLVVFIFLQDLRSTLIPAIAVPVSIIGTFFFLNVFGYSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +  +  ++   +     +     I    +      + 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHSKLDEGEKNPKKATLKAMNEISGAIISITLVMAAVFIP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G        F +T+ ++ILIS   A+++  A+   +++  K   +      +  L
Sbjct: 454 VTFITGPTGVFYEQFGVTLIIAILISAVNALTLSPALCALLLKAHKDDEVLKG---KNPL 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                                L  +     +    L   I                D   
Sbjct: 511 QRFYTLFNRGFNATLSRYGQSLHVLYKRKWISAVLLLIVIVGIFWASKTTPTGFVPDEDR 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                        S    +     L     +       + V                   
Sbjct: 571 GIIFANIELPPGASLDRTNAVTKDLYAKTREISGVDGVSFVKGSSLISGDGSNYAMGFLK 630

Query: 654 TEIVGPKISRELIRKGIVGVIISAI 678
            E    +    L  K I+G +    
Sbjct: 631 LEDWSDRKDASLSSKAIIGKLFGIA 655



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 79/285 (27%), Gaps = 11/285 (3%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            +    S       + +         +D    + +   +     ++   S         ++
Sbjct: 757  YASDFSRFGKQFRVYIQSLPEDRADVDDLNSMYVRTDSGEMAPITEFLSLKRVYGPQSVT 816

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
              N                   A   + E  K   +      +    E V         +
Sbjct: 817  RFNLFNSTTITGATNPGFSTGDAIRIIEEEAKNLPSNYTIAYSGLTREEVNAGS-----Q 871

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
               + V+       +       +      I +L   +         FG+E N+    A++
Sbjct: 872  TTFIFVLSILFVYFLLSAQYESYLLPFAVILSLPFGVFGAYISTKFFGLENNIYFQIALI 931

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG    + +++ +     ++      S  +         L   + TS A  + ++P+ 
Sbjct: 932  MLIGLLAKNAILIVEFA---IQRRENGESIVEAAINGAKARLRPILMTSFAFILGLMPLV 988

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +    G     S     A G+++     +F+   + +     + K
Sbjct: 989  LATGVGAEGNNSIGTGAAGGMLIGTLLGVFVIPILFILFQWLQEK 1033



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 90/243 (37%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L+ V +     Q    + ++      F+   Q +  ++      ++   + + + +
Sbjct: 256 EFLRLNDVATIELDAQSYSSNAESLGKPAVFMGIFQTKGSNAQEIIEDIKTTLETVEKNL 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P                  I K +  ++ + + + + ++I        L     + + I 
Sbjct: 316 PEGLHIFVPYDTSLFLNASIDKVVTTLLEAFLLVFLVVFIFLQDLRSTLIPAIAVPVSII 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F  +FG   NL  + A++  IG  V+D +VV + +   +       + +    K++
Sbjct: 376 GTFFFLNVFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHSKLDEGEK--NPKKATLKAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           NE  G  +  ++      +P+    G        F + +   I+++A +++ ++  +   
Sbjct: 434 NEISGAIISITLVMAAVFIPVTFITGPTGVFYEQFGVTLIIAILISAVNALTLSPALCAL 493

Query: 823 IYD 825
           +  
Sbjct: 494 LLK 496


>gi|304309957|ref|YP_003809555.1| Hydrophobe/amphiphile efflux-1 HAE1 precursor [gamma
           proteobacterium HdN1]
 gi|301795690|emb|CBL43889.1| Hydrophobe/amphiphile efflux-1 HAE1 precursor [gamma
           proteobacterium HdN1]
          Length = 1047

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/679 (10%), Positives = 180/679 (26%), Gaps = 35/679 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L           ++++P   P   I                  
Sbjct: 9   RPIFAWVIALAIVLGGALSI-----RYLPVEQYPEVAPPTII---------ITATYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +        +          L+F      +  + +V   ++ 
Sbjct: 55  AQVLEETVTNLIEQEMNGIDHLLYMESTSDSNGILNTLLTFRSGTSLDLSSVEVQNRIKR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  + ++  +     +   +++                  +    +D I       
Sbjct: 115 VEARLPEEVRRQGITVAKYRRNFMLILAFFSPDKSLDGTAIGSFVASNVLDNIRRVRGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +    +  +L +   + A++       N        G    R       
Sbjct: 175 EAMLLGT-EYSMRIWLNTYKLAEFNLSPAEVLRIVRAQNVQLATGELGALPSRPGQEIAA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      I       L   
Sbjct: 234 TVLTQGRL-------------KTPEEFGNIIIRANPDGATVYLKDIARIELGPQDYLLRT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T          L  G       ++          S   
Sbjct: 281 RYNGQPATALGIKLAPGENALDTSRRVHERLTELGEGFPASIGWVIPYDTSRFVEISIRE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  ++    + +++  TL  L LLG ++ + ++  +V
Sbjct: 341 VIKTLTEAFILVFLVMWLFLGSFRTAMIPALVVPVSLFGTLCGLYLLGYSINVLTLFAMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +    R+ + +   +      +    I    +      + + FF
Sbjct: 401 LAIGVVVDDAIVVVENVERIMREEKLAPLPATRKAMKQVIGAIIGITVILCSVFLPMAFF 460

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
           GG      + F++T+ L++  S   A+++  A+   +          +            
Sbjct: 461 GGSVGAIYQQFSVTLVLTMGFSALMAMTLSPALCATLLRPHQDHRGFLAWFNDRFTGFNH 520

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                           + +  +I +I ++    L  G          +   +    +   
Sbjct: 521 RYGHWMQWMVVRPARFLVVYLAIAAIAIVLFLRLPSGFLPDEDQGYLISVVQMPAGATQE 580

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L+ L   +  F   +     +    +          +     K   E    +    + 
Sbjct: 581 RTLKVLGQLEQYFLQQEEVGGIVSIAGFSFLGRGQDAAIAFTRLKSWDERKDPNQHALSV 640

Query: 656 IVGPKISRELIRKGIVGVI 674
           +     +   I++  + V+
Sbjct: 641 MQRANRALFGIKQAFMFVV 659



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/179 (11%), Positives = 59/179 (32%), Gaps = 9/179 (5%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFA 693
               + + EI                  E +      ++ +   + +++    +   W   
Sbjct: 831  EAMQAMEEIATHLPPGIGFEWSSTSMEEKLAAAQTPLLFTFSILAVFMCLAALYESWSVP 890

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               +  + + +   +       +  ++     ++T+IG S  + +++ +  R   +L   
Sbjct: 891  FAVLLMVPMGLFGAVLAVVFREMPNDVYFKVGIVTIIGLSAKNSILIVEFAR---QLEEA 947

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              S  +   ++    L   + TS A    V+P+      G S   +    +  G++ A 
Sbjct: 948  GHSALEAAVEAAKLRLRPIIMTSFAFVFGVMPLVFSTGAGASSRHAIGTGVMGGMIAAT 1006



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 67/154 (43%), Gaps = 6/154 (3%)

Query: 676 SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           + I + + +W+    +  A+     + + +  TL    L G   N+  + A++  IG  V
Sbjct: 348 AFILVFLVMWLFLGSFRTAMIPALVVPVSLFGTLCGLYLLGYSINVLTLFAMVLAIGVVV 407

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +VV + +     +    ++      K++ + +G  +  ++      LPMA +GGSV 
Sbjct: 408 DDAIVVVENV--ERIMREEKLAPLPATRKAMKQVIGAIIGITVILCSVFLPMAFFGGSVG 465

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                F++ +   +  +A  ++ ++  +   +  
Sbjct: 466 AIYQQFSVTLVLTMGFSALMAMTLSPALCATLLR 499


>gi|192290083|ref|YP_001990688.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris TIE-1]
 gi|192283832|gb|ACF00213.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris TIE-1]
          Length = 1055

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 80/687 (11%), Positives = 178/687 (25%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC IG +       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVIALFICLIGAISI-----PFLPVAQYPIIAPP-------------SISVSTQY 49

Query: 63  DDFVNG----FLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                      +    +E  +          +     Q +I  +F      E  +  V  
Sbjct: 50  PGASPENLYNSVTRLIEEELNGANGILNFESTSDSLGQVEIIANFEPGTDTEMASVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ + ++L     +  ++        + +            +     +IR  + +I   
Sbjct: 110 RIKRIEARLPRAVLQQGILVEEASSAVLQIITLTSTDGSLDEVGLGDFMIRNVLGEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP++L     T   ++      N        G        
Sbjct: 170 PGVGRATLY-STERALRIWIDPAKLIGYNLTADDVTKAIEAQNAQVASGSIGAEPTPKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  K ++S                +    +                 I       
Sbjct: 229 KISALVLVKGQLSSAD-------------EFGAVVLRANSDGSTVRLRDVARIEIGGFSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 QFNTRLNGKPTAGLSVLMSPTGNALATASAVEAKMKELSRFFPANIKYEIPYNITPVVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   ++ ++    + + ++ T A L + G ++ + S+
Sbjct: 336 SITKVLHTLVEAVVLVFVVMFLFLQNIRYTIIPTIVVPVALLGTCASLLMFGYSINMLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +     S+  S I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMAEEGLPPKEATRKAMSQITSAIIGITLVLIAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDIN 526
           + FF G      R F++TM  +I  S   A+S+  A+   +++                 
Sbjct: 456 MAFFPGSVGIIYRQFSVTMVSAIAFSALMALSLTPALCATLLKPVTKGHAHAERGVFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +   +      I        G  + I   +  +       +  G           +  
Sbjct: 516 NRTLDSVRERYSGIVRWNLGRTGRLMLIYAVLVGVLGFAMARMPGGFLPIDDQGFVTVDV 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    S      + ++  +      DG +N      +             +  K   E  
Sbjct: 576 QTPSDSSYNRTYDVVKQVEDYLLKRDGVQNVTFLTGFSFLGQGMNAAQAFVTLKDWGERD 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
             S+         +    +    I  +
Sbjct: 636 ANSSAAAIVDEANRKLGSIRDARISAL 662



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + +     + + +  T     +FG   N+ ++  ++  IG  V+D +VV + +     
Sbjct: 362 IRYTIIPTIVVPVALLGTCASLLMFGYSINMLSMFGMVLAIGILVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  ++   K++++     +  ++      LPMA + GSV      F++ M   I 
Sbjct: 420 MAEEGLPPKEATRKAMSQITSAIIGITLVLIAVFLPMAFFPGSVGIIYRQFSVTMVSAIA 479

Query: 807 VAASSSIFIAAPILLFIYD 825
            +A  ++ +   +   +  
Sbjct: 480 FSALMALSLTPALCATLLK 498



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 73/183 (39%), Gaps = 6/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      +  G  +  +L   +  + + +SA+ + + +   ++ W   
Sbjct: 834  DAIAEMERLADQLPRGFGYDWTGQSLQEKLSGSQAPIILALSALVVFLVLAALYESWTIP 893

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  + T+ L I   +    +  +  ++     ++T+IG +  D +++ +  +    L   
Sbjct: 894  LSVLLTVPLGIAGAVIAATMRSLPNDVYFTVGLITIIGLAAKDAILIVEFAKD---LRKE 950

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
              S R+   ++ +      + T +A    VLPM +  G+   S    +  G++    + +
Sbjct: 951  GKSLREATMEACHLRFRPILMTGLAFCSGVLPMVIASGAGGKSQQ-ALGTGVMGGMIAVV 1009

Query: 814  FIA 816
             +A
Sbjct: 1010 VLA 1012


>gi|262395801|ref|YP_003287654.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio sp. Ex25]
 gi|262339395|gb|ACY53189.1| inner membrane efflux transporter of RND family multidrug efflux
           pump [Vibrio sp. Ex25]
          Length = 972

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 73/603 (12%), Positives = 158/603 (26%), Gaps = 25/603 (4%)

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           +   S       + ++F      +     V   +  + SKL  + +   +         +
Sbjct: 1   MSSKSANDGSYSLNVTFDVGTDPDMAQVNVQNRVSQIESKLPQEVRMVGVTVKKRSPDLL 60

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++                  I     DQ+  ++   +          +    DP ++  L
Sbjct: 61  MVLNFYSPDGKYDDQFLINYINLNVKDQLARAKGISEVNVIGGGEYAMRVWLDPEKMANL 120

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             TT+ +       N        G     +    Q+ +  K  +                
Sbjct: 121 KLTTSDVYAALAEQNVQVAAGRVGAAPYNNPQEVQFNLVTKGRL-------------ESV 167

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +          +      +                  +    S ++  +   + 
Sbjct: 168 SEFENVVLRANPNGSTVYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESG 227

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +    L   L                      S      T      LV+ V ++ +   +
Sbjct: 228 QAVMELLEDLSKNFPEGMAYETSYDTTVFVSESIKGVVKTLIEAILLVIAVTYLFLGSAR 287

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   +I +++I T A++   G T+   ++ G++L IG+ VD  ILV E +     K+
Sbjct: 288 ATLIPVVAIPVSLIGTFAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENVDTTMAKD 347

Query: 446 Q--SVFCSLDMGFSRAYSTIFDSNIT---ALIATVVLFFFGGGAVRGFAITMGLSILISM 500
              S   +  +        I  S +      I   +L    G   R FA+T+ +S++IS 
Sbjct: 348 PTISPRKATLLAMKEVTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICISVVISS 407

Query: 501 FTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554
             A+++  A+   +            ++ +                   ++        +
Sbjct: 408 INALTLSPALCSLVLKQGGGNTANWFQAFNRGLERITTRYGQVAGFLVKKSLLLVTFFIV 467

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
             +  +     T       + KG + + V       LS        L          DG 
Sbjct: 468 AIAAVTFFAKTTSTAFVPQEDKGILLVNVQLPDSASLSRTEEVTNDLMNMIGEEPGVDGV 527

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +     V   +    T            I      R         V+
Sbjct: 528 TVANGYSFMTGAAASNGASVFIKLHDWDTRNSLQGEHSANAIAARINGRAATE-LPQAVV 586

Query: 675 ISA 677
            + 
Sbjct: 587 FAM 589



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 86/235 (36%), Gaps = 5/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D + +    + + +        +++   + +  + + +++  P 
Sbjct: 184 VYLKDVARVELGKKFYDGNGKFRGQDASIVALSLQSDANALESGQAVMELLEDLSKNFPE 243

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                T         E I+  +  +I + + ++             L  +  + + +  T
Sbjct: 244 GMAYETSYDTTVFVSESIKGVVKTLIEAILLVIAVTYLFLGSARATLIPVVAIPVSLIGT 303

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N   +  ++  IG  V+D ++V + +         +IS R     ++ E
Sbjct: 304 FAIMQATGFTINTVTLFGLILAIGIVVDDAILVIENV-DTTMAKDPTISPRKATLLAMKE 362

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  + +++      +P+A+  G        FA+ +   +V+++ +++ ++  +
Sbjct: 363 VTGPIITSTLVLLAVFIPVAMLPGITGIMYRQFALTICISVVISSINALTLSPAL 417



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 52/447 (11%), Positives = 116/447 (25%), Gaps = 26/447 (5%)

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           L+      P + G+ +  G +  +    +       + +     +   G   A +     
Sbjct: 514 LMNMIGEEPGVDGVTVANGYSFMTGAAASNGASVFIKLHDWDTRNSLQGEHSANAIAARI 573

Query: 467 NI--TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS---IVRAMMIFIIRYKKMK 521
           N      +   V+F  G  AV G     G   ++      S   +   M   I    +  
Sbjct: 574 NGRAATELPQAVVFAMGPPAVPGMGAASGFEFVLEDTLGRSRTDLSMVMGEMIQAANQAP 633

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
            I     +    +P                            L +  +N    F    ++
Sbjct: 634 EIAYTFSTFRANVPHYYVDIDREKAQQLGISLSSIFQTLQGNLGSLYVNDFTIFGKNFRV 693

Query: 582 GVLANR------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            + A+              V  S       S  +        D    + +          
Sbjct: 694 TMQADSQHRSSMEDLERFHVRSSNGDMVPLSTLVSYEQVFEPDVAWRYNMYRSAIIQGQP 753

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIY---IW 685
           A           +  +      Q        ++ + +  G   +   +   + IY   + 
Sbjct: 754 APGYSSGDAIAAMERVAAEVLPQGYTYEWTGMAYQEVLAGNQAIYAFALALIFIYLFMVA 813

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L  I  + +    +     L G   NL A   ++ LI  +  + +++ +  +
Sbjct: 814 QYESWSIPLAIILVVPVATLGSFLALNLTGTPLNLYAQIGLVLLIALAAKNAILIVEFAK 873

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
           +  +             K           TS +  + + P+    G+      S  + + 
Sbjct: 874 QEREE--KDADIDSAAVKGGTLRFRAVNMTSWSFILGIFPLIFAAGAGHVSQNSLGVSLI 931

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829
            G++    +  F+       +   R K
Sbjct: 932 GGLLCVLLAGTFLIPGFYALVQRQREK 958


>gi|75676925|ref|YP_319346.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrobacter winogradskyi
           Nb-255]
 gi|74421795|gb|ABA05994.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrobacter winogradskyi
           Nb-255]
          Length = 1053

 Score =  164 bits (415), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 83/687 (12%), Positives = 179/687 (26%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC +G +       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVALFICLVGAISI-----PFLGVAQYPIIAPP-------------SISIATAY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L       +   L            S    Q +IT  F      +  +  V  
Sbjct: 50  PGASPQNLYNSVTRLIEEQLNGASGILNFESTSDSLGQVEITAFFVPGTSTDLASVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ + ++L     K  ++        + +            +     + R  I +I   
Sbjct: 110 RIKRIEARLPAAVLKEGILVEEASSAVLQIITLRSTDDSLDEVGLGDFMTRNIIGEIRRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +L     T+  ++      N        G    R   
Sbjct: 170 PGVGRATLF-STERSLRVWLDPEKLVGYGMTSEDVTKAIAAQNAQVASGSIGGPPSRAGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  K ++                 +    +                 +       
Sbjct: 229 KTAALVLVKGQLG-------------TPEEFGSILLRANRDGSTVRLRDVARVEVGGMDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 RFTTRLNGKSTAGLSVLLAPGANALATASAVEAKMEELSKFFPANITYDIPYNITPVVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ ++    + + ++ T A+L + G ++ + ++
Sbjct: 336 SIEKVVHTLIEAVVLVFLVMFLFLQNIRYTIIPTIVVPVALLGTCAVLLIAGYSINMLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +     S+  S I    +  +   V 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLPPREAARKAMSQITSAIVGITLVLMAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + FF G      R F++T+  +I  S   A+S+  A+   +         + +       
Sbjct: 456 MAFFPGSVGIIYRQFSVTVVAAIAFSALMALSLTPALCATLLKPVKAGHAHARKGLFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +   +    ++      R  G  + I   +  + +     L  G              
Sbjct: 516 NRALEGVRGRYVSTVGWSLRRTGRLMLIYAVLVGVLVWAFVRLPAGFLPVDDQGFITTDV 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    S       +++  +       G KN      +        T    +  K  +E  
Sbjct: 576 QTPADSSHGRTGAAVEAVERYLAERPGVKNVTFLTGFAYSGQGMNTAQAFITLKDWSERP 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
              +  N      +    L    I  +
Sbjct: 636 EKDSAANIVADANRDLASLRDAKITAL 662



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 91/246 (36%), Gaps = 6/246 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V            + +        L  L     +++A    +E   ++++
Sbjct: 255 RDGSTVRLRDVARVEVGGMDYRFTTRLNGKSTAGLSVLLAPGANALATASAVEAKMEELS 314

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           +  P +   +       + +  I K +  +I + + + + +++  +   + +     + +
Sbjct: 315 KFFPANITYDIPYNITPVVKASIEKVVHTLIEAVVLVFLVMFLFLQNIRYTIIPTIVVPV 374

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     + G   N+  +  ++  IG  V+D +VV + +     +    +  R+   
Sbjct: 375 ALLGTCAVLLIAGYSINMLTMFGMVLAIGILVDDAIVVVENV--ERIMSEEGLPPREAAR 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++++     V  ++      +PMA + GSV      F++ +   I  +A  ++ +   +
Sbjct: 433 KAMSQITSAIVGITLVLMAVFVPMAFFPGSVGIIYRQFSVTVVAAIAFSALMALSLTPAL 492

Query: 820 LLFIYD 825
              +  
Sbjct: 493 CATLLK 498



 Score = 47.4 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 66/177 (37%), Gaps = 8/177 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G  +  +L   +    + +SA+ + + +   ++ W   
Sbjct: 834  DAIAEMERLAGRLPRGFGYEWTGQSLQEKLSGSQAPFLLALSALVVFLCLAALYESWTIP 893

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  + T+ L I   +      G+  ++     ++T+IG +  D +++ +  +    L   
Sbjct: 894  LAVLLTVPLGIFGAVLAATTRGLANDVYFTVGLVTIIGLAAKDAILIVEFAKD---LRAQ 950

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
              S  D   ++        + T  A    VLPM +    GG+   +    +  G++ 
Sbjct: 951  GKSLIDATMEACALRFRPILMTGFAFASGVLPMVIASGAGGASQQALGTSVMGGMIA 1007


>gi|87123240|ref|ZP_01079091.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           RS9917]
 gi|86168960|gb|EAQ70216.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           RS9917]
          Length = 1095

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 69/567 (12%), Positives = 157/567 (27%), Gaps = 32/567 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +      +   +I  +G++       P   +   P+  P               +     
Sbjct: 9   KRPVLTTVCSILIVLMGVIAI-----PTLPIANLPNIAPPL-----------IQVTANYG 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLF 118
                     +    ++  + +        +   + Q+ I + F ++   +     V   
Sbjct: 53  GANSLVTEQAVTNPIEQQINGVPGASYISSTSNMEGQSIIQVYFDETTDIDIDQVNVQNR 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L        +         ++  Q +  Q    A   +  +  Q    +G  E
Sbjct: 113 VSLAMPQLPAQVSATGVSVQQSTPSILLAYQVSSTQGQFDAAYLNGLVYEQLYYPLGRVE 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                              DP +L     T  ++       N +  G + G      +  
Sbjct: 173 GVANVNILGGSNPAYWLFVDPDKLAANKLTAQEVVDAVQAQNTTAIGGLVGGPPAAGNQA 232

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             Y +          L     N         + +     G     +   +          
Sbjct: 233 YTYPL----------LVQNNGNLISIDDFNNLIVGRSPTGNLLLLKDVGEVQYGFNNYTT 282

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                +             + +     +          A   P                S
Sbjct: 283 AAINTSNYDTITVAVFQTPESNALDVADAVVKEMTSFAATVPPGVTVQQVYNIGQFIESS 342

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                    +   LVL++LF+ +   +  +V   +I +++I T A + + G ++   ++ 
Sbjct: 343 VEGVIDALGLAIVLVLLILFIFLQNWRATVVPSLAIPISLIGTFAFIKVFGFSINQLTLL 402

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+VL  GL VD  I+V E + +          +        +  +  + +  +   V + 
Sbjct: 403 GLVLATGLVVDDAIVVIEAVSKNIEAGLRPRQAALACMGELFGALVATALVLMAVFVPVA 462

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F+ G      + FA+T+  SI IS F A++    +   I++  + K           +I 
Sbjct: 463 FYPGSIGIIYQQFALTIAFSIAISAFNALTFSPMLSGLILKGGEQKEPKGWAWPVAGVIV 522

Query: 536 DCIAIQFMRARFWGVGISILFSICSIC 562
                +F  A F      +   +  + 
Sbjct: 523 GLAFGRFSSASFGSWTYVLGVVVGGLA 549



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 72/163 (44%), Gaps = 9/163 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            ++     +++Y+ +      +   +  + T+ L +   LGF AL  I+ N+ A   ++TL
Sbjct: 918  LVFGLGILIVYLVLSAQYESYVTPVIILMTVPLAMLGALGFLALRSIDLNVYAQVGLVTL 977

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG +  + +++ + + +  +   + +S  + +  S    L   + T++AA    LP+ V 
Sbjct: 978  IGLAAKNGILIVE-VAE--QHLDSGMSASEAVIASAESRLRPILMTAIAALAGFLPLVVA 1034

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G     S    +  G+VVA   S+ +  P  + I     +
Sbjct: 1035 NGAGAQSQQSLGTVIFGGLVVATILSLGVVPPFYVVIKGLEER 1077



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/148 (21%), Positives = 64/148 (43%), Gaps = 9/148 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +     + + +  T  F  +FG   N   +  ++   G  V+D +VV + + KN++
Sbjct: 368 WRATVVPSLAIPISLIGTFAFIKVFGFSINQLTLLGLVLATGLVVDDAIVVIEAVSKNIE 427

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                   R      + E  G  V T++      +P+A + GS   +   FA+ +AF I 
Sbjct: 428 AGLR---PRQAALACMGELFGALVATALVLMAVFVPVAFYPGSIGIIYQQFALTIAFSIA 484

Query: 807 VAASSSIFIAAPIL--LFIYDWRAKNAR 832
           ++A +++   +P+L  L +     K  +
Sbjct: 485 ISAFNAL-TFSPMLSGLILKGGEQKEPK 511


>gi|206889221|ref|YP_002248759.1| AcrB/AcrD/AcrF family protein [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|206741159|gb|ACI20216.1| AcrB/AcrD/AcrF family protein [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 1027

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 70/604 (11%), Positives = 167/604 (27%), Gaps = 40/604 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I   GL+           +   P+      +             L   
Sbjct: 9   QRPVMTTLLMLAIIVFGLV-----GYRYLPIAELPNVDFPTIL---------VTANLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +           +   +ITL F  +R  +  A  V   +  
Sbjct: 55  SPETMASAVATPLEREFSTISGLKSMNSINAKGVTQITLEFDLNRDIDAAAQDVQTAISR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + +L  +                +L    I                     I +     
Sbjct: 115 ASRQLPSNMPTPPTYNKVNPADMPILY-FAITSPTMPLYRLHEYADTLLAQNISMVNGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP+ +        ++       N           +   +     
Sbjct: 174 QVQIFGAQKYAVRVRIDPNLIASKGIGIDEVEQAIKKGNVELPTGTLYGNYQAFTIEATG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                      ++ ++          +      D++         G 
Sbjct: 234 QL----------------FNASHYNELIIASKEGSPVKIKDIGEAVDSVENDKLAAWYGS 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +     +        L+          +      +   S   
Sbjct: 278 GGKLQRAMVLAIYRQPGTNTVEVADNVKKKVDELKRQIPASVSLNLLYDRSQSIRESVRD 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+F+ +      ++   ++ +++I T A++ LLG +L   S+  + 
Sbjct: 338 VQFTLLFTVFLVVLVIFLFLRRLSATVIPSVALPISIIGTFAVMYLLGYSLDNLSLMALT 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG  VD  I++ E I     K +  F +   G    + TI    ++ +   + + F G
Sbjct: 398 LSIGFLVDDAIVMLENIVRHIEKGEKPFQAALNGSKEIWFTILSMTLSLVAVFIPVLFMG 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPLSRFF 532
              G   + FA+T+ ++ILIS   ++++   M    +R +  K       ++        
Sbjct: 458 GIVGRLFKEFAVTISVAILISGLVSLTLTPMMCSRFLRVQNQKHGKLYMALEKGFEWMIN 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +    ++      +   +G  ++  I +   +         + K  I +   A+  +   
Sbjct: 518 VYKISLSWSLKHHKLMMIGSGVILIITAYIFVKIPAGFLPSEDKSQIFVMTEASEDISFD 577

Query: 593 VVRS 596
            +  
Sbjct: 578 EMVR 581



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 74/220 (33%), Gaps = 9/220 (4%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q           V + V +   +I    ++         I   +       +    +
Sbjct: 289 IYRQPGTNTVEVADNVKKKVDELKRQIPASVSLNLLYDRSQSIRESVRDVQFTLLFTVFL 348

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +L+      +    +     L + I  T     L G   +  ++ A+   IG+ V+D +
Sbjct: 349 VVLVIFLFLRRLSATVIPSVALPISIIGTFAVMYLLGYSLDNLSLMALTLSIGFLVDDAI 408

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +   ++                 E     +  +++     +P+   GG V     
Sbjct: 409 VMLENI---VRHIEKGEKPFQAALNGSKEIWFTILSMTLSLVAVFIPVLFMGGIVGRLFK 465

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILL--FIYDWRAKNARI 833
            FA+ ++  I+++   S+    P++   F+     K+ ++
Sbjct: 466 EFAVTISVAILISGLVSL-TLTPMMCSRFLRVQNQKHGKL 504



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 97/284 (34%), Gaps = 11/284 (3%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            W   I    +   + L               + +       V L+ V +  +S+    ++
Sbjct: 742  WISTIYAPNNQYEVILELKPEYQKDPSALSMLYIRSSKGELVPLNSVATVSQSIGPLTVN 801

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                         L+       A + + ++ K  + + +  S     +            
Sbjct: 802  HTGQLPSVTISFNLKPDISLGEALSEIQKVAKATLPDTIMTSFQGAAQAFKESFQGL--- 858

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                 +I++   + I + I ++ +   +  ++ L       L    +FG+E N+ +   +
Sbjct: 859  --WFLLIVAVFVVYIVLGILYESFIHPITILSALPFAGFGALVTLLVFGVELNIYSFVGI 916

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG    + +++ D           ++   + I  +        + T+MAA    LP+
Sbjct: 917  IMLIGLVKKNGIMMID--FALHAQRNENMKAHEAIYNACLIRFRPIMMTTMAALFGALPI 974

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            A+    GG V     + +  G++ +   ++F+     L++   +
Sbjct: 975  ALGIGAGGEVRQPLGLAVVGGLLFSQMLTLFVTPVFYLYMDRLQ 1018


>gi|184201008|ref|YP_001855215.1| protein-export membrane protein SecD [Kocuria rhizophila DC2201]
 gi|183581238|dbj|BAG29709.1| protein-export membrane protein SecD [Kocuria rhizophila DC2201]
          Length = 652

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 110/519 (21%), Positives = 196/519 (37%), Gaps = 39/519 (7%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD------EDDFV 66
           ++  + +   L   L   +        P     L LDL GG+ +VL           D  
Sbjct: 61  LLALVAVTALLAATLIWGVGTDRTGWAP----KLALDLEGGTQMVLSPSLQGEKAGQDIT 116

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              L    + +R  +   G+    +        +            D +    Q      
Sbjct: 117 QEQLDQAVEIIRQRVDGAGVSEAEITTQSGSNIVVSMPGVPSSETRDLIQTSAQMAFR-- 174

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI-IRQRIDQIGISESTIQRLG 185
            V        T  ++         +  +    +  + +   + Q    +  +    Q+  
Sbjct: 175 PVIVTGPGEATPKDQRTKAKDIPKSDGKPSDSSDPRWITPQLFQSYQALDCTAPQPQKDR 234

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
           + +   +     DP    + +    ++   ++   +  +                     
Sbjct: 235 AAQPQDKAVVACDPESKTKFILGPVEIPGTEIADASYAQATNSQG--------------- 279

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
                  H  G  A       +                +  + +     A+VLDG V++A
Sbjct: 280 -------HATGGYAVNLQFDEQGTATFKELSERLYGLGQKGQQDPRSQFAIVLDGSVVSA 332

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
           P +N  I  GKAQI+GNFT + A  L+  L+ G+LP+  +I  E+ + A LGS+ +  G 
Sbjct: 333 PSMNSVITDGKAQITGNFTEDEAKFLSQQLKYGALPVSFSIDSEQQISATLGSNQLRMGI 392

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT----LPSIAGIV 421
            A + GL L+ ++ +  Y   GLV   S+ +  +LT   ++LLG        L  +AG+V
Sbjct: 393 VAGLIGLALVCVYSLFQYRWLGLVTIASLVVAGVLTYLAITLLGWGANYRLSLAGVAGLV 452

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG   DS I+  ERIR+E R  +++  ++D G+ RA  T+  S    L+A VVL+F  
Sbjct: 453 VAIGQTADSFIVYFERIRDEIRAGRTIPAAVDHGWQRARQTVLASKAVNLLAAVVLYFVA 512

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            G VRGFA T+GL+ +  +         +M+ + R    
Sbjct: 513 VGNVRGFAFTLGLTAIADLLVVFLFTHPVMVLLARTWYF 551



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 72/207 (34%), Gaps = 8/207 (3%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G+           + K   +    +I + + +   +    +R GIV  +I    + +Y 
Sbjct: 347 TGNFTEDEAKFLSQQLKYGALPVSFSIDSEQQISATLGSNQLRMGIVAGLIGLALVCVYS 406

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVV 740
             +++W   L  I +L++    T     L G       +L  VA ++  IG + +  +V 
Sbjct: 407 LFQYRWL-GLVTIASLVVAGVLTYLAITLLGWGANYRLSLAGVAGLVVAIGQTADSFIVY 465

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++R+R  ++      +    +D          + +     ++ + +       +  FA  
Sbjct: 466 FERIRDEIRA---GRTIPAAVDHGWQRARQTVLASKAVNLLAAVVLYFVAVGNVRGFAFT 522

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWR 827
           +    +           P+++ +    
Sbjct: 523 LGLTAIADLLVVFLFTHPVMVLLARTW 549


>gi|145594357|ref|YP_001158654.1| protein-export membrane protein SecF [Salinispora tropica CNB-440]
 gi|145303694|gb|ABP54276.1| protein translocase subunit secF [Salinispora tropica CNB-440]
          Length = 394

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 138/298 (46%), Gaps = 15/298 (5%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-----NRPVDLSVVRSNL 598
             R     ++   ++ S+        + GI+F GG  + V A      +  +        
Sbjct: 21  GRRRVWFSVAGALALISVLSFAFLRFDLGIEFAGGNSIQVPASVGTLEQAEEAVDAALAA 80

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           E      ++ Q   G  +    ++     +     V   V     E     +    E V 
Sbjct: 81  EGGGAEVVTAQKVGGTGDDFYEMRTSQLSAEQANAVKAAVA---QEFGLPVSDVGGEQVS 137

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
                ++  + ++G++I  + +++Y+ +RF+W  A+GA+++L++++  + G ++L G E 
Sbjct: 138 QAWGSQVTERAVLGLVIFLVLVMVYLVLRFEWRMAVGAVSSLLMNLVLSAGIYSLVGFEV 197

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTS 776
             + V   LT++G+++ D VVV+D++++N +  T   + ++ +  + +IN++L RS+ TS
Sbjct: 198 TPSTVIGFLTILGFALYDVVVVFDKVQENTRGITANNNQTYGEAANLAINQSLMRSLNTS 257

Query: 777 MAAFISVLPMA-----VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + A + V  +       +G   +    + +  G+ VA  SSI +A P+L+ + +   +
Sbjct: 258 IVALLPVGGLLFIGAGFFGAGTLKDLGLVLFVGMAVAFFSSITLATPLLVLLKNREPR 315


>gi|94272457|ref|ZP_01292128.1| multidrug resistance protein MexB [delta proteobacterium MLMS-1]
 gi|93450121|gb|EAT01457.1| multidrug resistance protein MexB [delta proteobacterium MLMS-1]
          Length = 531

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 75/543 (13%), Positives = 170/543 (31%), Gaps = 20/543 (3%)

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           IT+SFA     +  A  V   +Q   ++L    ++  +         +++          
Sbjct: 2   ITVSFAMGTDPDQAAIDVNNRVQAATARLPQQVRQQGVRVEARSTNMLMVPVLTSPDGRY 61

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
             I  S   +   ID++       +          +    +  RL +   T A ++    
Sbjct: 62  DPIFISNYTLLNVIDELVRLPGVGEASLFGSQDYSMRIWLETDRLARHNLTPADVANALR 121

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
             N        G +         Y +    ++S                +    I   + 
Sbjct: 122 EQNAQFAAGRLGGQPAPPEVAFTYAITSPGQLSN-------------PEEFENVILRADD 168

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
                                                 +   +   T E      A L+ 
Sbjct: 169 QGGVLRLGDVARAELGSQNYDLSATYNGTPAVPLGVYLQPGANALATAERVRETLAQLQE 228

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
              P     +          S      T  +   LV++V F+ + + +  L+   +I ++
Sbjct: 229 NFPPGLQYEIPYDTTEFVRISIREVATTIFVATALVVLVTFVFLQHLRATLIPVAAIPVS 288

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGF 456
           ++ T   + LLG ++ L ++ G+VL IG+ VD+ I+V E +      K  + + +     
Sbjct: 289 LVGTFTGMYLLGFSINLLTLFGLVLAIGIVVDNAIIVMENVERLIMEKGLNAYQAAVETV 348

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIF 513
            +    +  S +  +     + F GG +    R FA+T+ +S+++S   A+++  AM   
Sbjct: 349 RQVAGAVVASTLVLVAVFAPVAFLGGLSGELYRQFAVTIAVSVVVSGIVALTLTPAMCAK 408

Query: 514 IIRYKKMK---SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           ++  +         +       L    +A      R W +G++I  + C+  ++    L 
Sbjct: 409 LLDKQPHTAAAPFRLFNRVFAQLTSFFVACAGFMLRRWALGLTIFVACCAATIMLLERLP 468

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
            G+  +    + ++  +    S +  +              +    F     +       
Sbjct: 469 SGLVPQEDQGVALVVGQLPPASALGRSEAVRDQLSQQLVAMEEVGEFTSIAGFDIFSMSL 528

Query: 631 QTR 633
           ++ 
Sbjct: 529 RSN 531



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 86/239 (35%), Gaps = 6/239 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  D+S          L        +++A    +     ++ E  P     
Sbjct: 177 DVARAELGSQNYDLSATYNGTPAVPLGVYLQPGANALATAERVRETLAQLQENFPPGLQY 236

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                  +  R  IR+    + ++   +++  ++  +     L  +  + + +  T    
Sbjct: 237 EIPYDTTEFVRISIREVATTIFVATALVVLVTFVFLQHLRATLIPVAAIPVSLVGTFTGM 296

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   NL  +  ++  IG  V++ ++V + +     +    ++      +++ +  G 
Sbjct: 297 YLLGFSINLLTLFGLVLAIGIVVDNAIIVMENV--ERLIMEKGLNAYQAAVETVRQVAGA 354

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            V +++       P+A  G   G +   FA+ +A  +VV+   ++ +   +   + D +
Sbjct: 355 VVASTLVLVAVFAPVAFLGGLSGELYRQFAVTIAVSVVVSGIVALTLTPAMCAKLLDKQ 413


>gi|17549334|ref|NP_522674.1| transmembrane multidrug-efflux system lipoprotein transmembrane
           [Ralstonia solanacearum GMI1000]
 gi|17431586|emb|CAD18264.1| probable transmembrane multidrug-efflux system lipoprotein
           transmembrane [Ralstonia solanacearum GMI1000]
          Length = 1069

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 66/632 (10%), Positives = 167/632 (26%), Gaps = 33/632 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVENMLYMQSQANSDGNLTVTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + T        ++                   +    D++       
Sbjct: 116 AMPRLPDVVQRLGVTTIKSSPDLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLARINGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP+++ +   T  ++       N      + G          Q 
Sbjct: 176 QVQLFGSGDYSMRVWLDPNKVAERGLTANEVVRAIRDQNVQVAAGVIGGSPSLPGTDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    +      
Sbjct: 236 SVNAQGRLKTEQ-------------EFGDIILKSSPNGAVTTLRDVARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L+          +          S   
Sbjct: 283 LLDNKQAVAIPIFQAPGSNALQISDDVRKTMAELKEDFPEGVDYRIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T  L+ + G ++   S+ G+V
Sbjct: 343 VTHTLLEAVALVVLVVILFLQTWRASVIPLLAVPVSIIGTFGLMLMFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIADGLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRA--------------MMIFIIRYKKMKSID 524
              G   + FA+T+ +S +IS F ++++  A              ++  ++         
Sbjct: 463 GLTGQFYKQFALTISISTVISAFNSLTLSPALAALLLKSHDAPKDLLARVMERGLGWIFR 522

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                                    V + I  ++  +  L  + +  G       Q  V 
Sbjct: 523 PFNRVFGAASESYGRSTSRVIGRKAVMLGIYLALIGLTALLFNRVPGGFVPMQDKQYLVS 582

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             +  D + +    + ++          G ++ +                  +       
Sbjct: 583 FAQLPDGASLDRTEDVIRRMSDIALKHPGVESAVAFPGLSINGFTNSPSAGIVFVTLKPF 642

Query: 645 IVPLSTIQNTEIVGPKISRE--LIRKGIVGVI 674
               +   +   +  +++++   I+   + V 
Sbjct: 643 DQRKTPNLSGGAIAGQLNQQYGAIKDAFIAVF 674



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    +   + N+     ++ L+G +  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSLFAAMLGVWISHGDNNIFTQIGLVVLVGLACKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S  +   ++    L   + TS+A  + V+P+ +    G  +  +  + +  G+
Sbjct: 960  -LELQGRSIVEAAIEACRLRLRPILMTSIAFIMGVVPLVMSTGAGAEMRHAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      +F+     + +    ++  
Sbjct: 1019 LGVTLFGLFLTPVFYVVLRTLASRRR 1044



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 55/125 (44%), Gaps = 9/125 (7%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     + + I  T G   +FG   N  ++  ++  IG  V+D +VV + + +N+  
Sbjct: 369 VIPL---LAVPVSIIGTFGLMLMFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIAD 425

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
               +S R+   K++ E  G  +  ++      +P+A      G     FA+ ++   V+
Sbjct: 426 ---GLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTVI 482

Query: 808 AASSS 812
           +A +S
Sbjct: 483 SAFNS 487


>gi|303249445|ref|ZP_07335663.1| acriflavin resistance protein [Desulfovibrio fructosovorans JJ]
 gi|302489146|gb|EFL49120.1| acriflavin resistance protein [Desulfovibrio fructosovorans JJ]
          Length = 1036

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/515 (13%), Positives = 145/515 (28%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++ + I   G++        +  +   P+                  + L    
Sbjct: 10  RPVMTTLVMAAILIFGVMA-----YLKLPVSDLPNVDFPTIE---------VRVSLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    ++  S +               +ITL FA  R  +  A  V   +   
Sbjct: 56  PETMAAAVANPLEKQFSTIAGLDSMTSINSVGSTRITLQFALDRNIDAAALDVQSAMTTA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D              + +L    I   +    +           +I +     Q
Sbjct: 116 GKDLPDDLPSPPYFRKVNPADAPILY-LAISSDVMRLSDVDEYAENMMAQRISMVPGVAQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  + DP  +        ++S      N +             +  +   
Sbjct: 175 VSVYGSKKYAVRIQLDPEAMAAKGIGVDEVSDAVKKGNVNLPVGTVSGPSKEYTVRSSGK 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                            +                 +   +        
Sbjct: 235 LLTAA--------------------GYKPLIVAWRNGSPVRLSEIAKVTDSVEETRRFNW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            +           +   +    +++   L    +A         V      +   S S  
Sbjct: 275 FSGTPGLVLAIQRQPGTNTVEVVDSIKALLPHFQAQLPASVNLRVLYDRSASIRESVSDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T  +   LV++V+F+ +      ++   ++ ++V+ T A + +LG +L   S+  + L
Sbjct: 335 KFTLVLTVCLVVMVIFLFLRNIPATVIPSLALPMSVVGTFAAMYVLGFSLDNISLMALTL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G  VD  I++ E I       ++   +   G      TI    I+     + +FF G 
Sbjct: 395 SVGFVVDDAIVMLENIVRHLEMGKTPLAAAMEGSKEISFTIVSMTISLAAVFLPVFFMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G     FA+T+ +SILIS F +IS+   +   I
Sbjct: 455 VVGRLFHEFAVTIMVSILISGFVSISLTPMLCNLI 489



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 68/204 (33%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           +  ++     ++     ++        I   +       V+   +
Sbjct: 285 IQRQPGTNTVEVVDSIKALLPHFQAQLPASVNLRVLYDRSASIRESVSDVKFTLVLTVCL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++           +     L + +  T     + G   +  ++ A+   +G+ V+D +
Sbjct: 345 VVMVIFLFLRNIPATVIPSLALPMSVVGTFAAMYVLGFSLDNISLMALTLSVGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +   ++      +      +   E     V  +++     LP+   GG V     
Sbjct: 405 VMLENI---VRHLEMGKTPLAAAMEGSKEISFTIVSMTISLAAVFLPVFFMGGVVGRLFH 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ +   I+++   SI +   +
Sbjct: 462 EFAVTIMVSILISGFVSISLTPML 485



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 86/235 (36%), Gaps = 11/235 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L   ++           +   V + +      +   V+  V++   + +P S   + +
Sbjct: 784  DTLVKREVSVGPLSVNHSGQTPSVTISFNLRPGASLGGVVTAVEELARKELPGSIFTSFQ 843

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                     L     + V+++   ++IYI +      +   L  ++ L       L    
Sbjct: 844  GEAQAFQSSLTG---MAVLLAMAVLVIYIVLGILYESFIHPLTILSGLPSAGVGALATLM 900

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            LFG++ N+     ++ LIG    + +++ D   +        +  R  I +         
Sbjct: 901  LFGMDLNIYGFVGIIMLIGIVKKNAIMMIDFALE--AQRGKGMPARQAIYEGALTRFRPI 958

Query: 773  VYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            + T+MAA +  LP+A+  G+         + +  G++V+   +++      +++ 
Sbjct: 959  MMTTMAALMGTLPIALGFGAGAAARRPLGLCVVGGLIVSQLLTLYFTPVYYIYLD 1013


>gi|33468444|emb|CAD89792.1| hypothetical protein [Bacteroides ovatus]
          Length = 815

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 92/668 (13%), Positives = 200/668 (29%), Gaps = 43/668 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
              ++++P   P   I+                  + V   +    +E  + ++      
Sbjct: 6   SLPVEQYPDIAPPT-IN--------VFATYPGANAETVQKAVITPLEEAINGVEDMTYMT 56

Query: 89  FS-MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
            +        I + F      +  A  V   + G  S+L  +  K  + T  ++   ++ 
Sbjct: 57  STASNTGDASINIYFKQGTNADMAAVNVQNRVNGALSQLPAEATKTGVTTEKQQNAELMT 116

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
                          +  +      ++       +          +     P ++ Q   
Sbjct: 117 FALYSPDDRFDQTFLNNYVKINVEPRLKRISGVGKAQLFGS-NYSMRLWLRPDKMAQYGL 175

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
               +S      N       FG         N+Y ++ +  +SG               +
Sbjct: 176 IPDDISTVLARQNIEAATGSFGANHPT---ANEYTMKYRGRLSGAE-------------E 219

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
               +     G          ++            +        + + KA  + + TI+ 
Sbjct: 220 FGELVIKSLPGGNVLRLKEVADVELGDEYYNYSSEVNGHPAAMMLINQKAGSNASSTIKE 279

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
              +   L          +V          S      T      LV++V+++ +   K  
Sbjct: 280 IHEVLDDLSRDLPEGTEFVVLTDTNKFLYASIHSVLRTLLEAILLVIVVVYVFLQDIKST 339

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ- 446
           L+   SIF+++I T A++S++G ++ L ++  +VL IG  VD  I+V E ++ +  +   
Sbjct: 340 LIPTISIFVSIIGTFAVMSMIGFSINLLTLFALVLAIGTVVDDAIVVVEAVQAKFDEGYQ 399

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTA 503
           S   + D       S I  S I  +     +   GG +      F ITM +++ IS   A
Sbjct: 400 SAVLAADDAMKGVSSAILTSTIIFMAVFFPVAMMGGTSGAFYTQFGITMAVAVGISAVNA 459

Query: 504 ISIVRAMMIFI------------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
            ++  A+   +              +        N +           + F+  R W + 
Sbjct: 460 FTLSPALCALLLKPYIDEQGNTKNNFAARFRKAFNAVFDSLSRRYVRGVMFIIHRRWLLW 519

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
             I  S   + LL        I  +    + V  N     S+ +++    +I        
Sbjct: 520 SIIGISFGLLVLLVNVTKTGLIPEEDTGTVMVSMNTKPGTSMAQTSKVMERINSRLDSIG 579

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
           + E +  V      G   +Q      +K          ++ +        + ++    + 
Sbjct: 580 EIEYSGAVAGFSFSGSGPSQAMYFVTLKDWEQRKGEGQSVNDVIGKIYAATSDIPDATVF 639

Query: 672 GVIISAIA 679
            +    IA
Sbjct: 640 AMSPPMIA 647



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ + I  T    ++ G   NL  + A++  IG  V+D +VV + ++   
Sbjct: 335 DIKSTLIPTISIFVSIIGTFAVMSMIGFSINLLTLFALVLAIGTVVDDAIVVVEAVQAKF 394

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                S       D ++       + +++       P+A+ GG+       F I MA  +
Sbjct: 395 DEGYQSAVL--AADDAMKGVSSAILTSTIIFMAVFFPVAMMGGTSGAFYTQFGITMAVAV 452

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A ++  ++  +   +  
Sbjct: 453 GISAVNAFTLSPALCALLLK 472


>gi|121585553|ref|ZP_01675349.1| protein-export membrane protein SecF [Vibrio cholerae 2740-80]
 gi|153800859|ref|ZP_01955445.1| protein-export membrane protein SecF [Vibrio cholerae MZO-3]
 gi|153818093|ref|ZP_01970760.1| protein-export membrane protein SecF [Vibrio cholerae NCTC 8457]
 gi|153820722|ref|ZP_01973389.1| protein-export membrane protein SecF [Vibrio cholerae B33]
 gi|227812259|ref|YP_002812269.1| protein-export membrane protein SecF [Vibrio cholerae M66-2]
 gi|229506146|ref|ZP_04395655.1| protein-export membrane protein SecF [Vibrio cholerae BX 330286]
 gi|229509996|ref|ZP_04399476.1| protein-export membrane protein SecF [Vibrio cholerae B33]
 gi|229514147|ref|ZP_04403608.1| protein-export membrane protein SecF [Vibrio cholerae TMA 21]
 gi|229516443|ref|ZP_04405890.1| protein-export membrane protein SecF [Vibrio cholerae RC9]
 gi|229522262|ref|ZP_04411678.1| protein-export membrane protein SecF [Vibrio cholerae TM 11079-80]
 gi|229526795|ref|ZP_04416199.1| protein-export membrane protein SecF [Vibrio cholerae bv. albensis
           VL426]
 gi|229528480|ref|ZP_04417871.1| protein-export membrane protein SecF [Vibrio cholerae 12129(1)]
 gi|229605685|ref|YP_002876389.1| protein-export membrane protein SecF [Vibrio cholerae MJ-1236]
 gi|254225175|ref|ZP_04918788.1| protein-export membrane protein SecF [Vibrio cholerae V51]
 gi|254285715|ref|ZP_04960678.1| protein-export membrane protein SecF [Vibrio cholerae AM-19226]
 gi|254849852|ref|ZP_05239202.1| protein-export membrane protein SecF [Vibrio cholerae MO10]
 gi|255746539|ref|ZP_05420486.1| protein-export membrane protein SecF [Vibrio cholera CIRS 101]
 gi|262158871|ref|ZP_06029984.1| protein-export membrane protein SecF [Vibrio cholerae INDRE 91/1]
 gi|298499493|ref|ZP_07009299.1| protein-export membrane protein SecF [Vibrio cholerae MAK 757]
 gi|121550170|gb|EAX60184.1| protein-export membrane protein SecF [Vibrio cholerae 2740-80]
 gi|124123569|gb|EAY42312.1| protein-export membrane protein SecF [Vibrio cholerae MZO-3]
 gi|125622274|gb|EAZ50595.1| protein-export membrane protein SecF [Vibrio cholerae V51]
 gi|126511361|gb|EAZ73955.1| protein-export membrane protein SecF [Vibrio cholerae NCTC 8457]
 gi|126521765|gb|EAZ78988.1| protein-export membrane protein SecF [Vibrio cholerae B33]
 gi|150424212|gb|EDN16150.1| protein-export membrane protein SecF [Vibrio cholerae AM-19226]
 gi|227011401|gb|ACP07612.1| protein-export membrane protein SecF [Vibrio cholerae M66-2]
 gi|229334842|gb|EEO00328.1| protein-export membrane protein SecF [Vibrio cholerae 12129(1)]
 gi|229336953|gb|EEO01971.1| protein-export membrane protein SecF [Vibrio cholerae bv. albensis
           VL426]
 gi|229340247|gb|EEO05253.1| protein-export membrane protein SecF [Vibrio cholerae TM 11079-80]
 gi|229346324|gb|EEO11295.1| protein-export membrane protein SecF [Vibrio cholerae RC9]
 gi|229348127|gb|EEO13085.1| protein-export membrane protein SecF [Vibrio cholerae TMA 21]
 gi|229352441|gb|EEO17381.1| protein-export membrane protein SecF [Vibrio cholerae B33]
 gi|229356497|gb|EEO21415.1| protein-export membrane protein SecF [Vibrio cholerae BX 330286]
 gi|229372171|gb|ACQ62593.1| protein-export membrane protein SecF [Vibrio cholerae MJ-1236]
 gi|254845557|gb|EET23971.1| protein-export membrane protein SecF [Vibrio cholerae MO10]
 gi|255736293|gb|EET91691.1| protein-export membrane protein SecF [Vibrio cholera CIRS 101]
 gi|262029444|gb|EEY48095.1| protein-export membrane protein SecF [Vibrio cholerae INDRE 91/1]
 gi|297541474|gb|EFH77525.1| protein-export membrane protein SecF [Vibrio cholerae MAK 757]
 gi|327485703|gb|AEA80109.1| Protein-export membrane protein SecF [Vibrio cholerae LMA3894-4]
          Length = 300

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 144/279 (51%), Gaps = 6/279 (2%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R+    IS+L  + S+      GLN G+DF GG+    + N  V  S +   L+ +    
Sbjct: 13  RYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGES 72

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           +S      E  +++R         A+      +  ++  I     I +  +VG ++ +EL
Sbjct: 73  VSATPSGEEGRWVIRYPL-----AAEDATPVDIATELHHISDQVQIVSNSMVGSQVGQEL 127

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           I +G + ++I  +++L Y+  RF+W  A GA+  L+ D+   LGFFA+  +EFNLT  AA
Sbjct: 128 IDQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAA 187

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           VL ++GYS+ND +++ DR+R+ + L        D+ D++I  T  R++ TS    +++  
Sbjct: 188 VLAVLGYSLNDSIIISDRIRE-LLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISA 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + GG+ +  FAI M  GI+    SSI I   +  ++ 
Sbjct: 247 LWLMGGAPLQGFAIAMFIGIISGTWSSISIGTVLPEWLG 285


>gi|89902862|ref|YP_525333.1| acriflavin resistance protein [Rhodoferax ferrireducens T118]
 gi|89347599|gb|ABD71802.1| acriflavin resistance protein [Rhodoferax ferrireducens T118]
          Length = 1031

 Score =  164 bits (414), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 89/675 (13%), Positives = 206/675 (30%), Gaps = 38/675 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L+ M+  +GL+           + +FP       I             L   
Sbjct: 9   RKPVPSVLLFIMLTLVGLMS-----FRAMKIQQFPDIDLPTVI---------VSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + ++        ++     +T  F   +  +   D V   +Q 
Sbjct: 55  APAQMETEVARKIENSLASIQGLKHLYTKVQDGMATVTAEFRLEKPTQEAMDDVRDAVQR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D +   +       + ++    +  ++   A   S  +  Q    +       
Sbjct: 115 IRSDLPADLRDPAITKMDFAGMPVLTYTVSSSRMDDEA--LSWFVDHQVSKAMLAVRGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++  E DP+RL  L  T A +S           G    +     S     
Sbjct: 173 AVSRVGGVQREVRVELDPARLLALNATAADISRRLRDIQQDASGGRADLGGAEQSVRTIA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+  + ++                        RR       ++   +A      
Sbjct: 233 TVHSAQELGALEISL--------------------SDGRRIRLDQVASVSDTVAEQRSTA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     +     S         I    L+     + +       V   + + + 
Sbjct: 273 LLNGQTVVGFEITRSRGASEVEVANGVHIALDKLKTEHPDVTITE-AFNFVDPVIENYNG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+++ +   +   ++  ++ L++I T A++  LG ++ + ++  + 
Sbjct: 332 SLALMIEGAILAVIVVWLFLREWRATFISAVALPLSIIPTFAVMHWLGFSVNVVTLLSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I     + +S F +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIMRHLGQGKSPFQAALEAADEIGLAVIATTFTLIAVFLPTAFMA 451

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G A + F    G +  I++F ++ + R +   +  Y        +    +      +A  
Sbjct: 452 GVAGKFFVQ-FGWTAAIAVFFSLVVARMLTPMMAAYILKAPKKPHAEPVWMKWYLRLAAW 510

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            ++ R W +  +++F++ S   LF   +  G      +    +       S  R  L   
Sbjct: 511 CLKHRLWTLIATVVFALGSCTPLFLGKIAGGFIPPDDLSQTQVYITLTPGSTFRQTLAVA 570

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
           +   +  Q     K     +      +           +K T  + L+          + 
Sbjct: 571 EQARVIVQKNPHVKMVYTAVGGGKAGTDPFLSAGAAEARKATLTINLTPRSERRGTSKQA 630

Query: 662 SRELIRKGIVGVIIS 676
               +R+ +  V  +
Sbjct: 631 IESDLRRALEAVPGA 645



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 81/263 (30%), Gaps = 6/263 (2%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           +     G +++ +   R + L  V S  +++     +              + +    V 
Sbjct: 235 HSAQELGALEISLSDGRRIRLDQVASVSDTVAEQRSTALLNGQTVVGFEITRSRGASEVE 294

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
               + +   K+    P  TI         +         + +  + +A+++      +W
Sbjct: 295 VANGVHIALDKLKTEHPDVTITEAFNFVDPVIENYNGSLALMIEGAILAVIVVWLFLREW 354

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                +   L L I  T       G   N+  + ++  ++G  V+D +V  + +   M+ 
Sbjct: 355 RATFISAVALPLSIIPTFAVMHWLGFSVNVVTLLSLSLVVGILVDDAIVEIENI---MRH 411

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
                S      ++ +E     + T+       LP A   G        F    A  +  
Sbjct: 412 LGQGKSPFQAALEAADEIGLAVIATTFTLIAVFLPTAFMAGVAGKFFVQFGWTAAIAVFF 471

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +   +  +   +  +I     K 
Sbjct: 472 SLVVARMLTPMMAAYILKAPKKP 494



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 70/172 (40%), Gaps = 6/172 (3%)

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI 716
              +   EL     + ++   + + I + + F  W   +  +  L L I   +    +   
Sbjct: 839  DAEAMGELFSSFGLAMLTGVLCIYIVLVLLFHAWVQPVTILVALALSIPGAILALFITRT 898

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            +  + ++  ++ L+G +  + +++ +     M      ++  D +  + ++     V T+
Sbjct: 899  DLTMPSMIGMIMLMGIATKNSILLVE--YAIMARREHGLNRWDALLDACHKRARPIVMTT 956

Query: 777  MAAFISVLPMAV-WGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +A    +LP+A+ +G         AI +  G++ +   S+ +   +  ++ D
Sbjct: 957  IAMGAGMLPIAIGFGTDPSFRAPMAIVVIGGLITSTFLSLLVIPVVFTYVDD 1008


>gi|39934570|ref|NP_946846.1| RND multidrug efflux transporter MexD [Rhodopseudomonas palustris
           CGA009]
 gi|39648419|emb|CAE26940.1| RND multidrug efflux transporter MexD [Rhodopseudomonas palustris
           CGA009]
          Length = 1055

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 80/687 (11%), Positives = 178/687 (25%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC IG +       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVIALFICLIGAISI-----PFLPVAQYPIIAPP-------------SISVSTQY 49

Query: 63  DDFVNG----FLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                      +    +E  +          +     Q +I  +F      E  +  V  
Sbjct: 50  PGASPENLYNSVTRLIEEELNGANGILNFESTSDSLGQVEIIANFEPGTDTEMASVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ + ++L     +  ++        + +            +     +IR  + +I   
Sbjct: 110 RIKRIEARLPRAVLQQGILVEEASSAVLQIITLTSTDGSLDEVGLGDFMIRNVLGEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP++L     T   ++      N        G        
Sbjct: 170 PGVGRATLY-STERALRIWIDPAKLIGYNLTADDVTKAIEAQNAQVASGSIGAEPTPKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  K ++S                +    +                 I       
Sbjct: 229 KISALVLVKGQLSSAD-------------EFGAVVLRANSDGSTVRLRDVARIEIGGFSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 QFNTRLNGKPTAGLSVLMSPTGNALATASAVEAKMKELSRFFPANIKYEIPYNITPVVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      LV +V+F+ +   ++ ++    + + ++ T A L + G ++ + S+
Sbjct: 336 SITKVLHTLVEAVVLVFVVMFLFLQNIRYTIIPTIVVPVALLGTCASLLMFGYSINMLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +      +     S+  S I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMAEEGLPPKEATRKAMSQITSAIIGITLVLIAVFLP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDIN 526
           + FF G      R F++TM  +I  S   A+S+  A+   +++                 
Sbjct: 456 MAFFPGSVGIIYRQFSVTMVSAIAFSALMALSLTPALCATLLKPVTKGHAHAERGVFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +   +      I        G  + I   +  +       +  G           +  
Sbjct: 516 NRTLDSVRERYSGIVRWNLGRTGRLMLIYAVLVGVLGFAMARMPGGFLPIDDQGFVTVDV 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    S      + ++  +      DG +N      +             +  K   E  
Sbjct: 576 QTPSDSSYNRTYDVVKQVEDYLLKRDGVQNVTFLTGFSFLGQGMNAAQAFVTLKDWGERD 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
             S+         +    +    I  +
Sbjct: 636 ANSSAVAIVDDANRKLGSIRDARISAL 662



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 57/139 (41%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + +     + + +  T     +FG   N+ ++  ++  IG  V+D +VV + +     
Sbjct: 362 IRYTIIPTIVVPVALLGTCASLLMFGYSINMLSMFGMVLAIGILVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  ++   K++++     +  ++      LPMA + GSV      F++ M   I 
Sbjct: 420 MAEEGLPPKEATRKAMSQITSAIIGITLVLIAVFLPMAFFPGSVGIIYRQFSVTMVSAIA 479

Query: 807 VAASSSIFIAAPILLFIYD 825
            +A  ++ +   +   +  
Sbjct: 480 FSALMALSLTPALCATLLK 498



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 73/183 (39%), Gaps = 6/183 (3%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      +  G  +  +L   +  + + +SA+ + + +   ++ W   
Sbjct: 834  DAIAEMERLADQLPRGFGYDWTGQSLQEKLSGSQAPIILALSALVVFLVLAALYESWTIP 893

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  + T+ L I   +    +  +  ++     ++T+IG +  D +++ +  +    L   
Sbjct: 894  LSVLLTVPLGIAGAVIAATMRSLPNDVYFTVGLITIIGLAAKDAILIVEFAKD---LRKE 950

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
              S R+   ++ +      + T +A    VLPM +  G+   S    +  G++    + +
Sbjct: 951  GKSLREATMEACHLRFRPILMTGLAFCSGVLPMVIASGAGGKSQQ-ALGTGVMGGMIAVV 1009

Query: 814  FIA 816
             +A
Sbjct: 1010 VLA 1012


>gi|116253012|ref|YP_768850.1| AcrB/AcrD/AcrF RND family transmembrane transporter [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115257660|emb|CAK08757.1| putative AcrB/AcrD/AcrF RND family transmembrane transporter
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1051

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 67/634 (10%), Positives = 164/634 (25%), Gaps = 43/634 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++  +++   GL            +   P                      +  
Sbjct: 23  RRPILALVFNTLMVVAGLAA-----YVGVEVRELPDVDRPVVT---------VRTTFDGA 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  L    +   + +        +    Q+++TL F+D+      A+ V   +  
Sbjct: 69  SPQTIDQELTKVIEGAVARVSGLKSISSTSSFGQSRVTLEFSDAIDLSVAANDVRDAIGR 128

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +V       +I+        +     + +  +  + ID++   +   
Sbjct: 129 ITQNLPEEADAPQIVKADSDSSAIMRLAVTSTNLNMD--DLTQLVENEVIDRLASVDGVA 186

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D   L     T   ++                            
Sbjct: 187 DVEEYGDQEKVFRVDVDQGALASRGLTIGDLTKALDNAALDVPAGSLKSNTQDIVVRATA 246

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + S + L                          R        +           
Sbjct: 247 NLQTPADFSNVILQD------------------------RVRLGDVATVMLGPRDGETAL 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +              L           V   +     G+   
Sbjct: 283 RSNGKPGIGLGIIRQAQSNTLNISTGIKAAVDQLSKTLPEGTTIAVTSDDAVFIQGAIHE 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + A +V  V+++ +   +  L+   S+ + +I TLA + ++G ++ + ++  IV
Sbjct: 343 VVLALVLAAVIVTAVIYLFLRDWRATLIPAVSMPVALIGTLAAIYMVGFSINILTLLAIV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  +  T     + L F  
Sbjct: 403 LATGLVVDDAIVVLENIVRRRSEGMGPRAAAVLGTREVFFAVIATTATLAAVFIPLSFLP 462

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F   +  S+ +S   A+++   +   ++    ++   +       L     
Sbjct: 463 GQVGGLFREFGFVLAFSVGLSSIVALTLCPMLASRMLTKPMLEDHGMLGRFGGALADLYK 522

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      V I          L+    +   +  +    L ++       S +    
Sbjct: 523 WALHGCLNAPFVVILFSVIFAGAALVAFSTVKSELTPEEDRSLVMMRLTTPQGSSLEYTR 582

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           + +Q+ +   Q      +               +
Sbjct: 583 DKMQLVEEYLQPLVDSGDIRNIFSISGQGGSLNS 616



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 75/232 (32%), Gaps = 6/232 (2%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L           N        +  Q Q       T +   V +    +   +TI  T   
Sbjct: 273 LGPRDGETALRSNGKPGIGLGIIRQAQSNTLNISTGIKAAVDQLSKTLPEGTTIAVTSDD 332

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
              I   +    +  V+ + I   +       W   L    ++ + +  TL    + G  
Sbjct: 333 AVFIQGAIHEVVLALVLAAVIVTAVIYLFLRDWRATLIPAVSMPVALIGTLAAIYMVGFS 392

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            N+  + A++   G  V+D +VV + +   ++  +  +  R        E     + T+ 
Sbjct: 393 INILTLLAIVLATGLVVDDAIVVLENI---VRRRSEGMGPRAAAVLGTREVFFAVIATTA 449

Query: 778 AAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                 +P++   G V      F   +AF + +++  ++ +   +   +   
Sbjct: 450 TLAAVFIPLSFLPGQVGGLFREFGFVLAFSVGLSSIVALTLCPMLASRMLTK 501



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
              + + + + +  +F+   +   I    + +      FAL   G   N+ +   ++ L+G
Sbjct: 864  GFAIVIIFLVLAAQFESVLS-SLIIMSTVPLGLACAVFALVITGSSLNIYSQIGLVLLVG 922

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                + +++ +      +L       R  I+K+    L   + T +A  +  +P+     
Sbjct: 923  VMAKNGILIVEFAN---QLRDRGEDVRSSIEKACALRLRPVMMTMIATILGGVPLVFAHG 979

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G     +    +  G+  A   ++FI     L +  +   +A
Sbjct: 980  AGAEARVALGWVIVGGLGFATLVTLFITPVAYLLLARFAKPHA 1022


>gi|150017336|ref|YP_001309590.1| acriflavin resistance protein [Clostridium beijerinckii NCIMB 8052]
 gi|149903801|gb|ABR34634.1| acriflavin resistance protein [Clostridium beijerinckii NCIMB 8052]
          Length = 1029

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 63/646 (9%), Positives = 182/646 (28%), Gaps = 40/646 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   ++ ++  ++  +G +      L        P                   +     
Sbjct: 9   KRPVFISVIMIVLTILGFVCYKGLTLNDMPNADMPYVS--------------VVVTENGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++    +        S+    ++  + F  S+  E  A +V   +  
Sbjct: 55  TPENIESKVTKQIEDAVQQISGVQNITSSVSSGMSQTVIEFDLSKNGEVAAQEVRDKISS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D    ++        SI+              + +  +      ++       
Sbjct: 115 VRGKLPTDADDPIISKFDMSATSIISIAVYGST---DNQKMTDFVDNTLKPKLYAVSGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++  + D ++L Q   T+  +       N  +                  
Sbjct: 172 AVNVSGEDTREIHIKLDNNKLLQYGLTSGAVINSIKSDNIDQSTGK-------------- 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  I G +    T N   +  +   +I                 +   +       
Sbjct: 218 ------VIDGDNQISITTNSKIQKVEDFKNILVSNKNGTEIRVKDIATVEDGIVEKTSQA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     + A      ++          +   N  +   +   
Sbjct: 272 YYQGNPSIGIDIVKQSGANTVEVAKEAKAALEQVKTSLPEGMHADIVTDNSTSIKDTVDD 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      L ++++F+ +   +  L++  S+ +++I T   +  +  TL   S+  + 
Sbjct: 332 VMNTIIEGCILAVVIVFLFLNEWESTLISASSLPISIITTFICMKEMDFTLNTMSLMALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL +D  I+V E I       +    +     S     +  + +  +   + +    
Sbjct: 392 LAVGLLIDDAIVVIENIVRHLHMGKHPIDAAKDATSEIGFAVIATTLAVIAVFLPMAMIA 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    FA+T+  S+ +S+F + ++V  M   ++R ++ +S         +      
Sbjct: 452 GIIGKFFIEFALTIVFSMAVSLFVSFTLVPMMSSRMLRSERKESKTFIGKFFGWFNYKFD 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                 +      +    ++ ++C +        I   G + + +     + ++    + 
Sbjct: 512 LFAEKYSHLLAFLLHKRITVLAVCAVMFVASLSLIPSLGFVMIPITDKGQITVNANFDSG 571

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +L       +  +        ++Y           + +      +
Sbjct: 572 ITLDTASKETKQIEEIVKKNPEVEYVYSTVTNSKATVNITLVDKKQ 617



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/265 (16%), Positives = 101/265 (38%), Gaps = 11/265 (4%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             N  +  K G ++ V     V+  +V    ++   G+ S      +++    ++     
Sbjct: 239 FKNILVSNKNGTEIRVKDIATVEDGIVEKTSQAYYQGNPSIGIDIVKQSGANTVEVAKEA 298

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A  +V   + + +   +      + +     +   +I   I+ V+I            
Sbjct: 299 KAALEQVKTSLPEGMHADIVTDNSTSIKDTVDDVMNTIIEGCILAVVIVF-------LFL 351

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            +W   L + ++L + I  T           N  ++ A+   +G  ++D +VV + +   
Sbjct: 352 NEWESTLISASSLPISIITTFICMKEMDFTLNTMSLMALSLAVGLLIDDAIVVIENI--- 408

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++         D    + +E     + T++A     LPMA+  G +IG F I  A  IV 
Sbjct: 409 VRHLHMGKHPIDAAKDATSEIGFAVIATTLAVIAVFLPMAMIAG-IIGKFFIEFALTIVF 467

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           + + S+F++  ++  +     ++ R
Sbjct: 468 SMAVSLFVSFTLVPMMSSRMLRSER 492



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 63/153 (41%), Gaps = 7/153 (4%)

Query: 684  IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +  +F+ +   +  +  L L +   +    + G + ++ A   ++ L+G    + +++ D
Sbjct: 862  MAAQFESFVDPIAIMFALPLALIGAIIGLYVGGSQLSMMAAIGIVMLMGLVAKNGILLID 921

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
              ++        +   + + ++    L   + T++A    ++P A+    G  +    A 
Sbjct: 922  AAKE---RIKKGMPRNEALVEAGLVRLRPIIMTTLAMIFGMIPTALATGAGTEMRKPMAQ 978

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +  G++ +   ++F+   +   +   + + A+
Sbjct: 979  AVIGGLITSTILTLFVVPIVYTILDGLKKRFAK 1011



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 52/533 (9%), Positives = 146/533 (27%), Gaps = 43/533 (8%)

Query: 5    PWLVILYSMICCIGLLIALPNF-LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               V+    +  +  L  +P+       +              G+ L            D
Sbjct: 528  RITVLAVCAVMFVASLSLIPSLGFVMIPITDKGQITVNANFDSGITL------------D 575

Query: 64   DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                       +E+     +      ++   +  + ++  D + ++  +  +   L    
Sbjct: 576  TASKE--TKQIEEIVKKNPEVEYVYSTVTNSKATVNITLVDKKQRKISSRDMAQKLGTDL 633

Query: 124  SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
              L            +            I+ V     +      + + +     ++T   
Sbjct: 634  KILPGM--DITASAASMGGGGGSSKDVAINLVGDDRAKVQAFAEKMKAEMAKDPDATNVG 691

Query: 184  LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
            + ++    ++    D  +   L   ++ ++       N      +     R         
Sbjct: 692  VNTNSGTPEVKMTVDRDKAADLGVNSSDVASTLATLFNGSTVTKYDGGKDRYDVKVLLQD 751

Query: 244  EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
            E +  +S +                 + +S          EVT+  +G   + +      
Sbjct: 752  EQRKNLSNLD---------------GIYVSGSNNKLVPLTEVTKKVVGTTSSTLHRYNKQ 796

Query: 304  TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                ++  +         N  +           + S+      +++  +     S     
Sbjct: 797  AQVELSCNVRGLSTGTLQNKYLAKIKSELPAGVSLSVGGMNGTMQKSMISLVQNSVLSVL 856

Query: 364  GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                ++A                 +   F++ L +I  +  L + G+ L++ +  GIV+ 
Sbjct: 857  LLYLVMAAQ--------FESFVDPIAIMFALPLALIGAIIGLYVGGSQLSMMAAIGIVML 908

Query: 424  IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---F 480
            +GL   + IL+ +  +E  +K      +L          I  + +  +   +        
Sbjct: 909  MGLVAKNGILLIDAAKERIKKGMPRNEALVEAGLVRLRPIIMTTLAMIFGMIPTALATGA 968

Query: 481  GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            G    +  A  +   ++ S    + +V  +   +   KK  +  I+      +
Sbjct: 969  GTEMRKPMAQAVIGGLITSTILTLFVVPIVYTILDGLKKRFAKKIHRKKSTPI 1021


>gi|329960885|ref|ZP_08299164.1| RND transporter, HAE1 family [Bacteroides fluxus YIT 12057]
 gi|328532171|gb|EGF58975.1| RND transporter, HAE1 family [Bacteroides fluxus YIT 12057]
          Length = 1036

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 66/660 (10%), Positives = 181/660 (27%), Gaps = 49/660 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I  +G++      L    +D++P   P               + +    
Sbjct: 9   RPVFSIVISVLIVLVGII-----GLTMLPVDQYPQITPPV-------------VKISASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                  +       +   +    G+         +     T++F  S   +  A ++  
Sbjct: 51  PGASALTVSQAVATPIEQEINGTPGMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   ++L  +  +N +    +    ++             I  S       +D +   
Sbjct: 111 RVKLAENRLPAEVIQNGISVEKQAPSQLMTICLTSSDPKFDEIYLSNFATINVLDLLRRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P +L     T   +       N      + G + +   D
Sbjct: 171 PGVGRVSNIGSRYYAMQIWAEPDKLANFGLTVQDLQNALKDQNRESAAGVLGQQPVTGLD 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                           +   T        +    +                 +    +  
Sbjct: 231 IT--------------IPITTQGRLSSVSQFEDIVVRANANGSIIRLRDVARVSLEASSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +     +        + A         +          
Sbjct: 277 STESGINGENAAVLGIYMLPGANAMEVADNVKNAMEEISANFPEGMSYEIPFDMTTYISE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  ++   ++ +++I T   + + G +L + ++
Sbjct: 337 SIHEVYKTLFEALILVVLVVFLSLQSWRATVIPIVAVPISLIGTFGFMLIFGFSLNILTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIA 473
            G++L IG+ VD  I+V E +      +  S + +     S     +  ++       + 
Sbjct: 397 LGLILAIGIVVDDAIVVVENVEHLMETEKLSAYEATKKAMSGLTGALIATSLVLCAVFVP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
              L    G   R F IT+ +S+L+S   A+++   M   I        +    + I+  
Sbjct: 457 VSFLSGITGQLYRQFTITIAVSVLLSTVVALTLSPVMCSLILRPDSGKKKNIVFRKINQW 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      I+      +       ++     I            + +G  ++ +   
Sbjct: 517 LNLGNHKYIGVISRAIKHPKRLMSAFGMVLIAIFIIHRLVPTSFLPTEDQGYFKVELELP 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L   R  +    +  +    +      +     + G + A++ +  ++K       
Sbjct: 577 EGATLERTR-IVTDRAVKYLEQNPYVAYIQNVTGSSPRVGSNQARSELTVILKPWEDRKG 635



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  I  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 362 SWRATVIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENV--EH 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
            + T  +S  +   K+++   G  + TS+      +P+  + G  G +   F I +A  +
Sbjct: 420 LMETEKLSAYEATKKAMSGLTGALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           +++   ++   +P++  +        +
Sbjct: 480 LLSTVVAL-TLSPVMCSLILRPDSGKK 505



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +         A+ G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVAVCGLENDIYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDKGGDLVQSAIHAAQLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            + A    I +     + +Y  +AK
Sbjct: 1005 IFAIVFGIVLVPFFFVLVYKTKAK 1028


>gi|153824463|ref|ZP_01977130.1| protein-export membrane protein SecF [Vibrio cholerae MZO-2]
 gi|149742017|gb|EDM56046.1| protein-export membrane protein SecF [Vibrio cholerae MZO-2]
          Length = 300

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 81/279 (29%), Positives = 144/279 (51%), Gaps = 6/279 (2%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R+    IS+L  + S+      GLN G+DF GG+    + N  V  S +   L+ +    
Sbjct: 13  RYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGES 72

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           +S      E  +++R         A+      +  ++  I     I +  +VG ++ +EL
Sbjct: 73  VSATPSGEEGRWVIRYPL-----AAEDATPVDIATELHHISDQVQIVSNSMVGSQVGQEL 127

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           I +G + ++I  +++L Y+  RF+W  A GA+  L+ D+   LGFFA+  +EFNLT  AA
Sbjct: 128 IDQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAA 187

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           VL ++GYS+ND +++ DR+R+ + L        D+ D++I  T  R++ TS    +++  
Sbjct: 188 VLAVLGYSLNDSIIISDRIRE-LLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISA 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + GG+ +  FAI M  G++    SSI I   +  ++ 
Sbjct: 247 LWLMGGTPLQGFAIAMFIGVISGTWSSISIGTVLPEWLG 285


>gi|54303305|ref|YP_133298.1| putative multidrug efflux RND transporter MexF [Photobacterium
           profundum SS9]
 gi|46916735|emb|CAG23498.1| putative multidrug efflux RND transporter MexF [Photobacterium
           profundum SS9]
          Length = 1044

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 79/693 (11%), Positives = 185/693 (26%), Gaps = 41/693 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L      LP   +  +P  +P   +                  
Sbjct: 10  RPIFASVLSILILIAGGLS-----LPNLPISEYPEVVPPTVV---------VRTAYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++FA     +    +V   +  
Sbjct: 56  PKVIAETVSAPLEEEINGVEDMLYMFSQGTSDGRMTLTITFALGTDLDKAQVQVQNRVSS 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++           +   +        +Q+       
Sbjct: 116 ALPRLPQEVQRLGVTTEKASPDLTMVVHLFSSDGQRTSQYLANYADIYVKNQLLRLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P  +     +T  +       N        G +     +  +Y
Sbjct: 176 DVQLFGGDKYSIRVWLNPDEIASRNLSTQDVLNAIRQQNTQVSAGSLGAQPASSDNEFEY 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+  K  +  +              +    I       +         +           
Sbjct: 236 LLNVKGRLGSLE-------------EFEQIIVRVTPEGQITRLKDLARVELGQESYALRA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +          L A L           +          S   
Sbjct: 283 TLNGKEAVAIPVFQRPGANALELSSQVRDLMAGLSNNFPDGVEYKIAYDPTVFVDSSIDA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T     GLV+IV+ + +   +  L+   ++ +++I T A++ LLG ++   S+ G+V
Sbjct: 343 VIHTLVEAIGLVVIVVILFLQTWRASLIPLIAVPVSLIGTFAVMQLLGVSINTLSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +     +     I    +      +   F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIANGLSPVDATRQAMNEVTGPIIAIALVLCAVFIPTAFIS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIF----------IIRYKKMKSIDINPL 528
              G   + FA+T+ +S +IS F ++++  A+             +      +       
Sbjct: 463 GLSGQFYKQFALTITISTIISAFNSLTLSPALSALLLKGHDEKPDLFTRLLNRLFGRWLF 522

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           + F  + D  A  + +     +  S++  +  + LL   G  Y     G I         
Sbjct: 523 TPFNKVFDKGASGYEKVVKKLIRFSVIVGVIYLGLLVATGKIYSSVPGGFIPAQDKQYLV 582

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
               +  ++        I        +   V+             V       +   +  
Sbjct: 583 AIAQLPDASSLDRTADVIKEMENIALETEGVQNTIAFPGLSVNGFVNASNSGIVFINLDD 642

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
              + +  +        +      +    +A+ 
Sbjct: 643 FENRLSPELSASQVANTLNGKFSVIGEGFVAVF 675



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 75/189 (39%), Gaps = 9/189 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S     ++  +     + V      +  +        +I   +  + +  I +++++   
Sbjct: 306 SSQVRDLMAGLSNNFPDGVEYKIAYDPTVFVDSSIDAVIHTLVEAIGLVVIVVILFLQ-- 363

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  +L  +  + + +  T     L G+  N  ++  ++  IG  V+D +VV + + +N
Sbjct: 364 -TWRASLIPLIAVPVSLIGTFAVMQLLGVSINTLSLFGMVLAIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           +      +S  D   +++NE  G  +  ++      +P A      G     FA+ +   
Sbjct: 423 IA---NGLSPVDATRQAMNEVTGPIIAIALVLCAVFIPTAFISGLSGQFYKQFALTITIS 479

Query: 805 IVVAASSSI 813
            +++A +S+
Sbjct: 480 TIISAFNSL 488



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 85/249 (34%), Gaps = 13/249 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V LS   S   +     +   N     +             AQ  ++E++K  + +  
Sbjct: 805  DMVPLSTFVSIEPTTGPDRVMRYNSYVSADVNGAAAPGYSSDQAQAAMIEVLKTHLQDG- 863

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                +                  I    +  I + + +  +++     +  I  + + I 
Sbjct: 864  ----MHYEWTDVVYQQIIAGNTMIYIFPLVIILVFLVLAAQYESLKLPMAIILIVPMTIF 919

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              +G   L   + N+    A++ LI  +  + +++ +  R+        IS  D I  + 
Sbjct: 920  SAVGGVWLTNGDNNIFTKIALIVLIALATKNAILMVEFAREKTNE---GISHLDAILIAC 976

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS+A    V+P+ V    G  +  +  + + +G+V      + +  P+   
Sbjct: 977  RLRLRPILMTSIAFTAGVVPLVVATGAGSEMRQAMGVAVMYGMVGVTFFGL-LLTPVFYM 1035

Query: 823  IYDWRAKNA 831
               ++ K +
Sbjct: 1036 AMTYKKKKS 1044


>gi|46446267|ref|YP_007632.1| putative acriflavin resistance protein D [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399908|emb|CAF23357.1| putative acriflavin resistance protein D [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 1025

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 73/676 (10%), Positives = 189/676 (27%), Gaps = 43/676 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   ++ ++   +   G +        +  +D FP                     L   
Sbjct: 9   KRPVFISMIMLALVVFGTIA-----FKELGVDLFPKIDFPVIT---------VISTLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + +   +    +E  S +        +  +  ++I + F   +       +V   +  
Sbjct: 55  DPETMEKSVTEIIEEAVSNISSIKHLRSTSAEGISQIIVEFDLDKNVNIAYQEVQAKIGT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D K  ++         I+    + DQ I    + +    +   D +       
Sbjct: 115 VRQELPNDLKDIIIEKFDIDSAPIMAVVLSGDQPIEELSKIAN---KTIKDSLQQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +    DP +L  +  +   +       +    G                
Sbjct: 172 QIKIVGKQDRNIWIYLDPYKLEGMHLSVQDVIQAIKNQHLEFPGGRIE------------ 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G          +    + +  I                 I   L       
Sbjct: 220 --------TGKIELPVKIKAEFDQSQNLSSIVVAYQNGYPIKISDIGTIVDGLEEQRTLA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE-ERNVGADLGSDS 360
            L        +   ++  +              L+       ++    +        S  
Sbjct: 272 RLNEKQAIALVIRRQSGTNTVNVAHAVKKELERLKPELAAQGIHTEIAQDLSVFIEHSIE 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +        L ++++F+ +   +  L++  +I ++V+ T  LL+ +  TL   ++  +
Sbjct: 332 EIEFHLLFGGALAILIVFLFLRNFRITLISALAIPISVMATFMLLNWMNFTLNTMTMLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVL 477
            L IG+ +D  I+V E I    ++ ++   +  +G      A   I  S +   +    +
Sbjct: 392 SLSIGILIDDAIVVVENIFRHFKQGKNAEEAAKIGTREIALAAFAITMSIVAVFLPVAFM 451

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     F +T+  ++L+S+F A S+   +    ++  K        + +     D 
Sbjct: 452 KGMIGRFFYQFGLTVTFAVLLSLFVAFSLTPMLAAKFLKPSKSNHFLSKWIGKALYCLDQ 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           I    +         S+  +   + +          +F                     +
Sbjct: 512 IYESLLIKALKFYKTSLFIAFFLLGMTIYLSQYIRSEFVPLEDQSEFFINVRTPLGSSLS 571

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +    + +I  Q    + ++        G+          +  K+T+    +  Q   + 
Sbjct: 572 VTDQALKNIRAQIQ--DNDWFKYSFSTIGNDSFNKVNEGGIYVKMTDKGTRTISQMDAMK 629

Query: 658 GPKISRELIRKGIVGV 673
             +     +    + V
Sbjct: 630 WVREKLTNLENMKISV 645



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 10/163 (6%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +   A+A+LI       +   L +   + + +  T           N   + A+   IG 
Sbjct: 338 LFGGALAILIVFLFLRNFRITLISALAIPISVMATFMLLNWMNFTLNTMTMLALSLSIGI 397

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++D +VV + +    + +    +  +       E    +   +M+     LP+A   G 
Sbjct: 398 LIDDAIVVVENI---FRHFKQGKNAEEAAKIGTREIALAAFAITMSIVAVFLPVAFMKGM 454

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +      F + + F +++    S+F+A  +   +     K ++
Sbjct: 455 IGRFFYQFGLTVTFAVLL----SLFVAFSLTPMLAAKFLKPSK 493



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 56/140 (40%), Gaps = 5/140 (3%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + ++   +   LG   +     ++  +  ++ L+G    + +++ D +  N+
Sbjct: 874  SFIQPLIIMLSVPFSMIGALGILVITQSTLSIFTIIGIIMLMGMVTKNAILLIDYI--NL 931

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +  R  I ++    L   + T++A    +LP+A+    G       A+ +  G+
Sbjct: 932  LRSKDGLDIRTAILRAAPTRLHPIMMTTLAMVFGMLPIALSNGPGSESRAPMALAIIGGL 991

Query: 806  VVAASSSIFIAAPILLFIYD 825
            V +   ++ I   +   + +
Sbjct: 992  VSSMFLTLIIVPVMYYMLDN 1011


>gi|171910125|ref|ZP_02925595.1| RND efflux transporter [Verrucomicrobium spinosum DSM 4136]
          Length = 1047

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 72/631 (11%), Positives = 175/631 (27%), Gaps = 49/631 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I  +GL+       P   +   P                     L   
Sbjct: 9   RRPVATALLTIGIFLVGLVA-----FPLLPVAPLPQVEFPTIQ---------VSARLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       IT+ F  +   ++ A +V   +  
Sbjct: 55  SPETMASSVATPLENQLALIPGITQMSSASGLGSVSITIQFDLNVNIDSAAQEVQSAISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              + +L   ++   +    E S         QI   E   
Sbjct: 115 AAGQLPTNLPSPPSYRKVNPADAPILV-LSLTSKVLPLEEVSDYGSNVIAQQISQLEGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  + DP +L  L  +   +         +     F       +     
Sbjct: 174 QVDIMGERKPAVRVQVDPVKLASLGLSLEDVRGVIAAATVNSPKGSFDGPKQSMAIYAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +P  D+                        +    
Sbjct: 234 QILKA--------------------EPYNDLILAYRNGAPIRVRDVGRAIDGPEQMRSAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++        +   +A  +   TI     L   L+A   P     V          S   
Sbjct: 274 LINNERGVGIMIRKQADANVIDTIARVRELLPQLQAAIPPAMQVDVLSDRSRTIRASVEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   LV +V+F  +  G+  L++   + ++++ T A++ ++G +L   S+  + 
Sbjct: 334 VELHLVLTVALVTMVVFAFLRNGRATLISSAVVPISIVATFAVMHVIGFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  +D  I++ E I     +      +   G +    TI     + +   + +   G
Sbjct: 394 ISVGFVIDDAIVMLENIYRYIEEGMKPMDAALKGAAEIGFTILSITFSLIAVFIPVLLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS--------- 529
              G   R FA+T+ +++L+S F +++ +  M    +R   +                  
Sbjct: 454 GIVGRLFREFAVTVSVAVLVSGFVSLTFIPMMCSLFLRPHHLPKKGTLRGWLDGILEKLF 513

Query: 530 --RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                +    + +     R   + +     +     +      + +   G + +      
Sbjct: 514 RGMESIYESMLKVVLRHQRLTLLSLVATIGLTGYVFVKMPKGFFPLQDTGMLNVTAEGAP 573

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            V  + +    + +    +      G +N +
Sbjct: 574 DVSFTSMYEKADQVGRILMEDPAILGMQNRI 604



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 86/236 (36%), Gaps = 9/236 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+     Q+   +  N +     ++R Q          RV E++ +    I P   +   
Sbjct: 261 RAIDGPEQMRSAALINNERGVGIMIRKQADANVIDTIARVRELLPQLQAAIPPAMQVDVL 320

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +    +  V+  A+  ++           L +   + + I  T     + 
Sbjct: 321 SDRSRTIRASVEEVELHLVLTVALVTMVVFAFLRNGRATLISSAVVPISIVATFAVMHVI 380

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N  ++ A+   +G+ ++D +V+ + +    +     +   D   K   E     + 
Sbjct: 381 GFSLNNLSLMALTISVGFVIDDAIVMLENI---YRYIEEGMKPMDAALKGAAEIGFTILS 437

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW 826
            + +     +P+ + GG V      FA+ ++  ++V+   S+ FI  P++  ++  
Sbjct: 438 ITFSLIAVFIPVLLMGGIVGRLFREFAVTVSVAVLVSGFVSLTFI--PMMCSLFLR 491


>gi|87124276|ref|ZP_01080125.1| preprotein translocase subunit [Synechococcus sp. RS9917]
 gi|86167848|gb|EAQ69106.1| preprotein translocase subunit [Synechococcus sp. RS9917]
          Length = 302

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/178 (32%), Positives = 103/178 (57%), Gaps = 5/178 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           + +GP +  +L+R  ++ + ++ I +  YI +R+   +A  A+  L  D+    G FA  
Sbjct: 124 DTIGPTLGSQLLRSSLISLAVAFIGISAYISVRYDRRYAFLALVALAHDVVIVCGLFAWL 183

Query: 715 GI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           G+    E +     A+LT+ GYSVND VVV+DR+R+  + +  ++S  + +D ++N TL 
Sbjct: 184 GLLISLEVDSLFAVALLTIAGYSVNDTVVVFDRIRE-RQRFDEALSLPEQVDIAVNATLT 242

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           R++YTS    + +L + ++GG+ +  FAI +A G+VV + SSI +A  +L+     R 
Sbjct: 243 RTLYTSGTTLLPLLALILFGGATLYWFAIALAVGVVVGSWSSIALAPSLLMLWSQQRR 300


>gi|294101593|ref|YP_003553451.1| protein-export membrane protein SecD [Aminobacterium colombiense
           DSM 12261]
 gi|293616573|gb|ADE56727.1| protein-export membrane protein SecD [Aminobacterium colombiense
           DSM 12261]
          Length = 464

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 133/479 (27%), Positives = 225/479 (46%), Gaps = 57/479 (11%)

Query: 41  KNRISLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             +I+LGLDL+GG+H+VL+          +  ++     LR+ + + G+    +++   +
Sbjct: 27  DGKINLGLDLKGGAHIVLQAKPTSGSALTDDSIERLLAVLRNRIDQYGVAEPVIQREGRD 86

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           ++ +        E   + +         K+                          D   
Sbjct: 87  RVIVDLPGVEDPEAALELIGKTALLEFRKVLGATP--------AMPPGPERQNYASDDEF 138

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
             A ++  +   +        E                        +Q+      +    
Sbjct: 139 QAAQKRWNDAKVEIETYKSELE------------------------KQVGIAGGDIVAKD 174

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
                   G              Q+    +  ++                     + F+ 
Sbjct: 175 EEGRYFLLGPSLVSGKHLVDAKTQFDNLGRAVVT---------------------LEFNS 213

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GA+ F + T +N+GK +++VLDG V++APV+ + I  G AQISG F+   A  LA MLR
Sbjct: 214 EGAKLFEQATAENVGKQISIVLDGNVVSAPVVQERISGGNAQISGRFSTAEAQRLAIMLR 273

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP+ ++++E R+VG  LG+DSI  G  A + G +L++ FM++ Y   G+ AD ++ +
Sbjct: 274 AGALPVPVDVLENRSVGPSLGADSINAGLKAGLIGTLLVLGFMLLYYRTLGIAADVALTV 333

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
            ++L  A L  L ATLTLP IAGI+L IG+AVD NIL+ ERI EE +  ++   ++D GF
Sbjct: 334 CLLLVFAGLISLKATLTLPGIAGIILTIGMAVDGNILIYERIIEEAKLGKTPTAAIDAGF 393

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
            +A +TI D+NIT LIA  VL++FG G +RGFA+T+ + IL S+F+AI + R ++  ++
Sbjct: 394 KKALTTILDANITTLIAAGVLYYFGSGPIRGFAVTLSIGILASVFSAIVVTRVLLQVLM 452



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 73/173 (42%), Gaps = 4/173 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I  G+   +I  + +L ++ + ++    + A   L + +           
Sbjct: 288 SVGPSLGADSINAGLKAGLIGTLLVLGFMLLYYR-TLGIAADVALTVCLLLVFAGLISLK 346

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  +++Y+R+ +  KL     +    ID    + L   +  
Sbjct: 347 ATLTLPGIAGIILTIGMAVDGNILIYERIIEEAKL---GKTPTAAIDAGFKKALTTILDA 403

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++   I+   +  +G   I  FA+ ++ GI+ +  S+I +   +L  +     
Sbjct: 404 NITTLIAAGVLYYFGSGPIRGFAVTLSIGILASVFSAIVVTRVLLQVLMGGSK 456


>gi|298368665|ref|ZP_06979983.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Neisseria sp. oral taxon 014 str. F0314]
 gi|298282668|gb|EFI24155.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Neisseria sp. oral taxon 014 str. F0314]
          Length = 1028

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/616 (12%), Positives = 170/616 (27%), Gaps = 41/616 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ ++  +G+   L     Q  ++  P+                  +     
Sbjct: 9   RRPIPTIVLFLLLTVMGIFSFL-----QLPVNATPNVSFPIVT---------VSISRAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +   + +         +    +  T+ F      +   + V   +  
Sbjct: 55  SPDEMENSVTRQVETAVAGMAGVRHITSEISDGISVTTVEFRLGTDTDRAVNDVRNAVTQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L     + L+     +  ++        +    A   S  +      ++       
Sbjct: 115 IRGDLPQGIDEPLVERVEVEGGALSYYALESPE--MDAAALSWFVDDTVSRRLLAVSGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + + S     ++  +  P RL  L  T  +++      N +             +     
Sbjct: 173 KVVRSGGSKREITVQLRPDRLEALGITADQVNSQLTQTNANIPAGRTVQGGSELNLRVLA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +    ++   +                         RR        +    A +    
Sbjct: 233 SAKGVDALADTPIAL--------------------SDGRRAKLSELAYVSDGHAEIRSRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           S     +      A L+     I+        V +   S   
Sbjct: 273 RLNGREVVGFNVFRAKGSSDTEVAKGVEAAVAELQKQHPEIR-IRNVFSTVESTRESYDT 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++V+F+ +   +  LVA  ++ L+++    ++     TL   ++ G+ 
Sbjct: 332 AIDTLLEGALLTVLVVFLFLRNWRSTLVAAVALPLSILPAFVVMYAFDYTLNNVTLLGLT 391

Query: 422 LGIGLAVDSNILVNERIREENRKN---QSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           L +G+ VD  I+  E I                       A   I  + +   +    + 
Sbjct: 392 LVVGILVDDAIVEIENIENHLATGKRPFPAAIDAADAIGFAVVAITGTIVAVFLPVSFIS 451

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F IT+  ++L S+ TA      +  ++++  K  + D      F      +
Sbjct: 452 GVVGQYFSQFGITVSAAVLSSLLTARLATPLLAAYLLQPHKGATSDERTHGFFMGSYLKL 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLSVVRSN 597
               ++ R   +    L    S  +L      +      G  Q+ V       L+     
Sbjct: 512 LTWALQHRKTTMLAGGLVLAASFAMLPLLPTGFIPKSDVGYSQVTVSLPPGSTLAETDRT 571

Query: 598 LESLQIGDISFQNFDG 613
           L +L  G       D 
Sbjct: 572 LHALSDGIRRHPEVDA 587



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 78/251 (31%), Gaps = 5/251 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G+D      + +   R   LS +    +         +    E       + +       
Sbjct: 236 GVDALADTPIALSDGRRAKLSELAYVSDGHAEIRSRARLNGREVVGFNVFRAKGSSDTEV 295

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            + +E    ++ +  P   I+N                   +  + + +L+       W 
Sbjct: 296 AKGVEAAVAELQKQHPEIRIRNVFSTVESTRESYDTAIDTLLEGALLTVLVVFLFLRNWR 355

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L A   L L I         F    N   +  +  ++G  V+D +V  + +  ++   
Sbjct: 356 STLVAAVALPLSILPAFVVMYAFDYTLNNVTLLGLTLVVGILVDDAIVEIENIENHLATG 415

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG--GSVIGSFAIPMAFGIVVAA 809
                       +I   +     T +A F+ V    + G  G     F I ++  ++ + 
Sbjct: 416 KRPFPAAIDAADAIGFAVVAITGTIVAVFLPVS--FISGVVGQYFSQFGITVSAAVLSSL 473

Query: 810 SSSIFIAAPIL 820
            ++  +A P+L
Sbjct: 474 LTAR-LATPLL 483



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 84/219 (38%), Gaps = 7/219 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   + ++           VL  +          + ++  E    +   E+  +  + +
Sbjct: 786  DRERRISVEADLNSGHTIGEVLTQINALPVMQNLPAGVRTPEYGDAEYMNEMFSRFGMAM 845

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +L+ + + F+ +   +  IT L L +   LG   L+G   +L++V  +L L+G 
Sbjct: 846  GFGILMVLVVLVLLFRDFLQPVTIITALPLSLGGALGGLLLYGAALDLSSVIGILMLMGI 905

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
               + +++ D + +         +    I +S  E     + T++A    +LP    GGS
Sbjct: 906  VTKNSILLVDFIIE---KRRHGTARARAIYRSGAERARPIIMTTIAMAAGMLPSVFAGGS 962

Query: 793  ---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                    A+ +  G++V+ + S+           D R 
Sbjct: 963  GAAFRAPMAVVVICGLIVSTALSLVFVPVFYSLADDLRQ 1001


>gi|323138508|ref|ZP_08073577.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocystis sp. ATCC 49242]
 gi|322396304|gb|EFX98836.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocystis sp. ATCC 49242]
          Length = 1052

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 80/663 (12%), Positives = 183/663 (27%), Gaps = 46/663 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL+           + +FP  +P               + +   
Sbjct: 8   RRPRLALVISIVITVAGLIA-----YFALPVAQFPDIVPP-------------QVQVTAV 49

Query: 62  EDDFVNGFLQM-YSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++   +  +   +   E +         +    + +SF      +  +  VT
Sbjct: 50  YPGADASAVEQGVAQIIEPAVNGVEKMIYMKSTSGADGSYTLLVSFEVGSNPDLDSVNVT 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V ++L  + ++  +         + +           A+  S       +D++  
Sbjct: 110 NRVNQVIAQLPPEVQRLGVTVKKRSAAMVQVVTFYSPDGSKDALFLSNYATINALDRLAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                + L    +   +    D  RL  L  T A +       N        G   L DS
Sbjct: 170 VPGVGEALLFGPLDYSMRLWLDIDRLSSLGLTAADVVKAVEAQNVQAAVGRIGAAPLVDS 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +  +  ++ +                   I                 +     V
Sbjct: 230 VDFQINLTAQGRMTSVE-------------DFENIIVRASGEGALVRVKDVARVELGAKV 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +   T      +   L+          V         
Sbjct: 277 SDSATRFNGKPAAGIGVYQAPGANAIETAHGVRKVLEELKPRMPEGVTAEVMYDTTVFVE 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +    K T      LV +V+F+ +   +  ++   ++ + +I   A++  LG +L   S
Sbjct: 337 QTMEAVKHTLVEAFVLVGVVVFVFLGSLRATIIPIVAVPVALIGAFAVMLALGFSLNTVS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  +VL IG+ VD  I+V E +      +   +   + +    +    I    +  L   
Sbjct: 397 LLALVLAIGIVVDDAIVVVENVEHVLEHHPELTAAEATEKAMGQITGPIIAITLVLLSVF 456

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDIN 526
           V   F     G   + FA+++  S+LIS   A+S+  A+   +++ ++        +   
Sbjct: 457 VPTAFIPGITGQLYKQFAVSVCFSMLISAIAALSLSPALCSLVLKRRERPTGVMAKLQGG 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +              RA   G  + +                   + +G     +   
Sbjct: 517 IDAARDGYVRMARPLVHRALISGAIVLLFAIGAGALAKIVPTGFLPDEDQGAFMGEIQLP 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +S   + LE ++   +      G  +   +          +   +  +K       
Sbjct: 577 DAASVSRTTAVLEDVEQIIMQKPWAAGVFSVSGKSLLDGLALSNKAFFVVTLKPFAERKD 636

Query: 647 PLS 649
           P  
Sbjct: 637 PSM 639



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 84/270 (31%), Gaps = 6/270 (2%)

Query: 563  LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                   +            V         V    +  + + +             V L 
Sbjct: 765  WQVKAQADASNRMTPDDIFRVRLRGASGEMVPLRAVADIDLVNAPASIVRYNNLRSVTLN 824

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              P    +    +  +++     +P            +      + G +  +    A L 
Sbjct: 825  GGPAPGYSSGEAIAAMEEVAKNNLPNGFGYEWTGTALQEKAAAGQTGRILGLAVLFAYLF 884

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
             + +   W      + ++ + +   +    L G++ NL A   V+ LI  +  + +++ +
Sbjct: 885  LVALYESWSIPTAVLFSVSVGLFGAMLALKLTGLDNNLFAQIGVVVLIALAAKNAILIVE 944

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAI 799
               +  +     +S RD   ++        + TS A  + ++P+      G +   +   
Sbjct: 945  FAMERRRA---GLSIRDAALEAAGLRFRAVMMTSFAFILGLVPLVKATGAGAATQRAVGT 1001

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +  G++ A+   +F+   + + I   R +
Sbjct: 1002 SVFGGMLAASLVGVFLIPGLYVIIQTLRER 1031



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 61/141 (43%), Gaps = 7/141 (4%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
               I  + + +          G   N  ++ A++  IG  V+D +VV + + +++  + 
Sbjct: 370 P---IVAVPVALIGAFAVMLALGFSLNTVSLLALVLAIGIVVDDAIVVVENV-EHVLEHH 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             ++  +  +K++ +  G  +  ++      +P A      G +   FA+ + F ++++A
Sbjct: 426 PELTAAEATEKAMGQITGPIIAITLVLLSVFVPTAFIPGITGQLYKQFAVSVCFSMLISA 485

Query: 810 SSSIFIAAPILLFIYDWRAKN 830
            +++ ++  +   +   R + 
Sbjct: 486 IAALSLSPALCSLVLKRRERP 506


>gi|83745615|ref|ZP_00942673.1| Transmembrane drug efflux pump [Ralstonia solanacearum UW551]
 gi|207739527|ref|YP_002257920.1| drug efflux protein [Ralstonia solanacearum IPO1609]
 gi|83727692|gb|EAP74812.1| Transmembrane drug efflux pump [Ralstonia solanacearum UW551]
 gi|206592907|emb|CAQ59813.1| drug efflux protein [Ralstonia solanacearum IPO1609]
          Length = 1033

 Score =  164 bits (414), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 69/621 (11%), Positives = 165/621 (26%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+            +   P                  +  L    
Sbjct: 10  RPVATALLTIGVALAGIAA-----FNLLPVSPLPQVDFPTI---------SVNASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               ++TL F  SR  +  A  V   +   
Sbjct: 56  PETMAATVATPLERSLGRIAGITEMTSQSSLGSTRVTLQFDLSRDIDGAARDVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L      N          + ++    +        E           ++       Q
Sbjct: 116 RSLLPSGLPSNPTYRKVNPADAPIMI-LGLTSDTKSRGELYDAASTILAQKLSQISGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P+ L +   +T  +       N +K   M               
Sbjct: 175 VNIGGASLPAVRVELNPTALNKYAISTETVRTVITATNANKPKGMLEA------------ 222

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G  +    AN   +  +    +                 +   +  + +   
Sbjct: 223 --------GDRVWTIYANDQARKAEEYKPLIIAYRNGAPVRLSDVAEVTDSVQDIRNYGS 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I + +   +   T++    +   LR          V          S    
Sbjct: 275 ANGKPSVLLIINRQPGANIIDTVDRINAILPYLRNTIPAQINLDVMMDRTPTIRASLRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV++V+++ +   +   +   ++ +++I T  ++ L G +L   S+  + +
Sbjct: 335 ERTLMLSIGLVIMVVYLFLRNLRATFIPSVAVPVSLIGTFGVMYLCGYSLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +            +   G      T+   + + +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENVSRHIENGMRPMQAALKGAREVGFTVVSMSFSLIAVFIPLLMMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFF 532
             G   R FA+T+ ++IL+S+  +++    M   +             +  +        
Sbjct: 455 IVGRLFREFAVTLSVAILVSLVISLTTTPMMCARLLKPASEEEPGWFHRKTERFFTLLLD 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +A     +    + +     +     +      +     G +   + A++ +   
Sbjct: 515 GYRHSLAWALRHSWLTLMILLATVCLNVYLYIVVPKGFFPQQDVGRLMGFIQADQSISFQ 574

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +R+ L             D 
Sbjct: 575 AMRTKLVDFIHIVQQDPAVDS 595



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 87/245 (35%), Gaps = 10/245 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV LS V    +S+Q               L+  +    + +     +  +  
Sbjct: 246 IAYRNGAPVRLSDVAEVTDSVQDIRNYGSANGKPSVLLIINRQPGANIIDTVDRINAILP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK--GIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            +   +P     +  +      R  +R     + + I  + M++Y+++R           
Sbjct: 306 YLRNTIPAQINLDVMMDRTPTIRASLRDVERTLMLSIGLVIMVVYLFLR-NLRATFIPSV 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T G   L G   +  ++ A+    G+ V+D +VV + +    +     +   
Sbjct: 365 AVPVSLIGTFGVMYLCGYSLDNLSLMALTVATGFVVDDAIVVLENV---SRHIENGMRPM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
               K   E     V  S +     +P+ + GG V      FA+ ++  I+V+   S+  
Sbjct: 422 QAALKGAREVGFTVVSMSFSLIAVFIPLLMMGGIVGRLFREFAVTLSVAILVSLVISL-T 480

Query: 816 AAPIL 820
             P++
Sbjct: 481 TTPMM 485



 Score = 42.4 bits (97), Expect = 0.35,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 88/259 (33%), Gaps = 6/259 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                             +         V  S        +         +     L +  
Sbjct: 750  VMEAAPQYWQNPEGLQDIYLITSSGAQVPLSTFSHYGPSNTPLAVNHQGQFAASTLSFNL 809

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                + +   + ++  +  +   +T+  +     +  ++ +    V ++ + I + I + 
Sbjct: 810  APGASLSTATQQIQDAMNRLGVPTTVHGSFQGTARAFQDSLSSQPVLILFALITIYIVLG 869

Query: 686  IRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++ Y   +  ++TL       L    L   +F++ A+  V+ LIG    + +++ D  
Sbjct: 870  VLYESYMHPITILSTLPSAGVGALLALILTDTDFSIIALIGVILLIGIVKKNAIMMID-- 927

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
                   +  +S  D I  +        + T+MAA +  LP+A+    G  +     I +
Sbjct: 928  FALAAERSQGMSPADAIFHACVLRFRPILMTTMAALLGALPLALGHGDGAELRQPLGISI 987

Query: 802  AFGIVVAASSSIFIAAPIL 820
              G++V+   +++    + 
Sbjct: 988  VGGLLVSQILTLYTTPVVY 1006


>gi|117620366|ref|YP_857101.1| protein-export membrane protein SecF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561773|gb|ABK38721.1| protein-export membrane protein SecF [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 335

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 81/292 (27%), Positives = 152/292 (52%), Gaps = 5/292 (1%)

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           ++   IA+   R R+ G+  S+L ++ SI +L  +GL+ G+DF GGI L        +  
Sbjct: 32  MLRMIIAMGLTRWRYIGLWASVLLTVASIAVLAINGLSLGLDFTGGILLEFRIQTLKEAH 91

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            + + L +   G +          +L++L        A+    E+      ++     + 
Sbjct: 92  ELNALLTAPLAGVVELHGAGVPGEWLIKLPPHELPWAAE----ELAVMLGQQLNLPVELL 147

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            T IVGP++  EL ++G++ V+++++A+  Y+ +RF+W  A+G + +++ D    LG  A
Sbjct: 148 RTTIVGPQVGAELFQQGMLAVLVASLAISAYLAVRFEWRQAIGILVSVLHDGLVALGLLA 207

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           LF IEF+L  +A ++ +IGYS+ND +V+ DR+R  +    T +   D  D +I  T  R+
Sbjct: 208 LFNIEFDLNVIAGLMAVIGYSLNDSIVISDRLRD-LLSSRTQMGIHDCSDVAIKATFSRT 266

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + TS     +V  + ++GG  +  F+  +  GI+V   SSI +A+ +   + 
Sbjct: 267 MITSGTTLFTVGALLLFGGDALYGFSFTLFAGILVGTISSITVASTVQELLG 318


>gi|116670846|ref|YP_831779.1| preprotein translocase subunit SecD [Arthrobacter sp. FB24]
 gi|116610955|gb|ABK03679.1| protein-export membrane protein SecD [Arthrobacter sp. FB24]
          Length = 585

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 106/526 (20%), Positives = 190/526 (36%), Gaps = 31/526 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N+    +L  +   + ++ A    L    +    S  P     L LDL GG+ ++L   
Sbjct: 7   KNSALR-VLVWLGVILAVMTA---VLAGGSISGQASWAP----KLALDLEGGTQMILAPK 58

Query: 62  ED---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            +   D     L      +R  +   G+    +     +  +        +     +   
Sbjct: 59  VEGGSDINEDQLNQAVAIIRQRVDGSGVAEAEISTQSGRNVVVSLPGTPSKETRALIQAS 118

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                  +        +   ++     +          S     + E+ ++         
Sbjct: 119 ADMNFRPVLQAGPGAAVPVESQTPEDKLPKPTAAPANSSDVNWVTPEVYKK--------- 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                     +    P +    R                 P          V+       
Sbjct: 170 -------FETLDCDNPSQDKQERSDPAKPLVTCEPATATSPAIKYILGPVEVKGSNIKSS 222

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           +  L +                 +  T K                  + ++     A+VL
Sbjct: 223 SFQLQQGAQGAVTNEWAVNIQFDEAGTAKFKEVTERLYQFFVAAGGESGNDPKAQFAIVL 282

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D +V++AP     I  G+ QI+G FT +TA  L+  LR G+LPI   I  E+ + A LG 
Sbjct: 283 DDQVISAPRSLAVITDGRPQITGGFTEDTAKALSDQLRFGALPISFEIQSEQQISATLGG 342

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT----L 414
           + +  G  A V GL+L+V++ +  Y   G V  FS+ +   LT   +++LG T      L
Sbjct: 343 EQLRMGLLAGVIGLLLVVVYSLFQYRALGFVTIFSLVVAGALTYLAIAILGWTENYRLSL 402

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
             +AG+++ IG   DS I+  ERIR+E R+ + +  +++ G+ RA  T+  S    L+A 
Sbjct: 403 AGVAGLIVAIGQTADSFIVYFERIRDELREGRGLVSAVENGWKRAKRTVLASKAVNLLAA 462

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +VL+F   G VRGFA T+GL+ +  +          +  + R K  
Sbjct: 463 LVLYFVAVGNVRGFAFTLGLTAIADLIVVFMFTHPTLQLLARTKFF 508



 Score = 97.1 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 79/260 (30%), Gaps = 10/260 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                            +         ++ + D                    G     T
Sbjct: 252 FKEVTERLYQFFVAAGGESGNDPKAQFAIVLDDQVISAPRSLAVITDGRPQITGGFTEDT 311

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                 + +   +     IQ+ + +   +  E +R G++  +I  + +++Y   +++   
Sbjct: 312 AKALSDQLRFGALPISFEIQSEQQISATLGGEQLRMGLLAGVIGLLLVVVYSLFQYR-AL 370

Query: 693 ALGAITTLILDITKTLGFFALFGIE----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               I +L++    T    A+ G       +L  VA ++  IG + +  +V ++R+R  +
Sbjct: 371 GFVTIFSLVVAGALTYLAIAILGWTENYRLSLAGVAGLIVAIGQTADSFIVYFERIRDEL 430

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTS-MAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +           ++        R+V  S     ++ L +       +  FA  +    + 
Sbjct: 431 RE---GRGLVSAVENGWKRA-KRTVLASKAVNLLAALVLYFVAVGNVRGFAFTLGLTAIA 486

Query: 808 AASSSIFIAAPILLFIYDWR 827
                     P L  +   +
Sbjct: 487 DLIVVFMFTHPTLQLLARTK 506


>gi|332884865|gb|EGK05120.1| hypothetical protein HMPREF9456_03033 [Dysgonomonas mossii DSM
           22836]
          Length = 1049

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 77/680 (11%), Positives = 183/680 (26%), Gaps = 49/680 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +GL+  L     +    +FP   P   I++     GG         
Sbjct: 8   RPVLATVISVILVLVGLISLL-----RLPSTQFPDIAPPT-INVSGSYPGG--------N 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V+  + +  +E  + ++       S     +  IT+ F      +  A  V   +  
Sbjct: 54  SESVSRSVIIPLEEAINGVEGMEYISSSAGNDGSFSITVVFKLGTNPDQAAVNVQNRVAQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIGISEST 180
            NS +  +  +  + TT ++  +I++     +       +          +  +   +  
Sbjct: 114 ANSLMPAEVLQGGITTTKQQNSNIMIFNITSNDASKYDELFLQNYANINLVPALKRIQGI 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP +L     T   +       +        G           
Sbjct: 174 GNIAIFGVKDYSMRIWLDPQKLTVNDLTPNDIDRAIQSASFEASPGKLGAESNAPMQYTM 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                  +  +    I                 +    +     
Sbjct: 234 KYKGKL----------------KEPSEFEKIILKANTDGSMLRLRDVARVEFGASFYDSD 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      +    +  + N            L     P     V +        S +
Sbjct: 278 NKQDGQPAVTMMIQQISGSNANRIETDVRASLTQLSENFPPGISYSVIQSAKERLDESIN 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+IV+F+ +   +  L+   ++ +++I T   L L G ++ + ++  +
Sbjct: 338 QVIKTLIEAFILVIIVVFIFLQDFRSTLIPAIAVPVSIIGTFFFLLLTGFSINVLTLFAL 397

Query: 421 VLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E +  +   +N     +           I    +      + + F
Sbjct: 398 VLAIGIVVDDAIVVVEAVHTKITEENMDPREATKTAMKEITGAIISITLVMCAVFLPIGF 457

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------------I 523
             G      + FA T+  +ILIS   A+++  A+    ++  + K               
Sbjct: 458 MEGPAGVFYKQFAFTLVFAILISAVNALTLSPALCALFLKPHEKKEGAKAGFKQRFFYAF 517

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +I            I     R       + ++  +    +          +  G I   +
Sbjct: 518 NIGFKETTDKYLKIINFSIKRKWLTMGALGLISVLAFWMMNNAPKDFVPSEDDGFITYSL 577

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 +L    + ++ +     +        +             +       +K K  
Sbjct: 578 SLPAGTNLQHTTAVIDRIDSAMQAMPETHSVTSVSGFNMLSNSSGPSYAIGFVRLKDKKE 637

Query: 644 EIVPLSTIQNTEIVGPKISR 663
                +     E +  ++  
Sbjct: 638 RGETQNMDDIIEAMSIRLED 657



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 88/242 (36%), Gaps = 6/242 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V          D   +        ++  Q    ++      +     +++E  P     
Sbjct: 263 DVARVEFGASFYDSDNKQDGQPAVTMMIQQISGSNANRIETDVRASLTQLSENFPPGISY 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           +      +   E I + I  +I + I ++I ++I    +   L     + + I  T  F 
Sbjct: 323 SVIQSAKERLDESINQVIKTLIEAFILVIIVVFIFLQDFRSTLIPAIAVPVSIIGTFFFL 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   N+  + A++  IG  V+D +VV + +    K+   ++  R+    ++ E  G 
Sbjct: 383 LLTGFSINVLTLFALVLAIGIVVDDAIVVVEAVH--TKITEENMDPREATKTAMKEITGA 440

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++      LP+    G        FA  + F I+++A +++ ++  +         
Sbjct: 441 IISITLVMCAVFLPIGFMEGPAGVFYKQFAFTLVFAILISAVNALTLSPALCALFLKPHE 500

Query: 829 KN 830
           K 
Sbjct: 501 KK 502



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 79/288 (27%), Gaps = 6/288 (2%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
            F+G   S  F                          V    P    +  + L  L+    
Sbjct: 752  FYGGSQSGDFIRFGKFYRVNIKAEGQYRMDERSLEQVYVKSPTQAMIPINTLVKLKKVYG 811

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                        + +   P        ++   +K I + +P         +  +  R   
Sbjct: 812  PEAMNRYNLFNSIAVNLLPTSGYGNGALMAAAEKVIQKELPHGYGYEWSGLSREEKRSNE 871

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  ++  +       I       +   L  + ++   +        L GI  N+     +
Sbjct: 872  QIFLIFGLCILFTYFILAAQYESYILPLAVLLSVPTGLLGVFIAINLAGITNNIYVQIGL 931

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG    + +++ +      +     I       +   +     + TS+A  I ++P+
Sbjct: 932  IMLIGLLAKNAILIVEFA---AQARKKGIPIIASALEGARQRFRPILMTSLAFIIGLVPL 988

Query: 787  AVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  G       S +I    G++      I     + +       K A
Sbjct: 989  TLATGPAAVGNHSISIGAIGGMLSGVILGIIFIPVLYILFQTLHEKIA 1036


>gi|148239698|ref|YP_001225085.1| preprotein translocase subunit SecD [Synechococcus sp. WH 7803]
 gi|147848237|emb|CAK23788.1| Preprotein translocase SecD subunit [Synechococcus sp. WH 7803]
          Length = 490

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 128/529 (24%), Positives = 220/529 (41%), Gaps = 73/529 (13%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           + +IL   I    +L + P                   + LGLDLRGGS L LEV     
Sbjct: 8   FALILALTIAAASVLTSFP-------------------LQLGLDLRGGSQLTLEVQPAGA 48

Query: 66  V----NGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQ 120
           +       L      L   +   G+   +++    +++ L           A  +     
Sbjct: 49  ITAIKPEQLDAVKLVLERRVNGLGVAESTLQTVGDDQLLLQLPGVTDPSRAARVLGSTAL 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                     ++ +                         ++   ++      +   SE  
Sbjct: 109 LEFRAQKPGTEEEM----------------------RSLLQLRAQLRSVLAAKAESSE-- 144

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                                        AK+     L  ++        + L  ++   
Sbjct: 145 ------------------TDDASIDSEELAKVQEALGLDGSASSEKEQLEQLLERTNAEI 186

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
               +   ++G  L  A       +    V + F+  G  RF ++T+   G    + +  
Sbjct: 187 VDRFEPAALTGKDLVTAGRQQRQNSTGWEVTLGFNAEGGDRFAKLTQSIAGTDRLLGIVL 246

Query: 301 RVLTAPVINQAI-------PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                   +            G A I+GNFT E A  L   LR GSLP+ + I+E R +G
Sbjct: 247 DGRPISEASVGPEFKAAGIAGGAATITGNFTAEEARDLEVQLRGGSLPLPVEILEVRTIG 306

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG++++ +   A ++GL+L+ +FM+V Y   GLVA  ++ L  +  LA  +L+  TLT
Sbjct: 307 PTLGAENVRRSLIAALSGLLLVGVFMVVTYRLAGLVAVMALGLYALFNLAAYALIPVTLT 366

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAG +L IG+AVD+N+L+ ERI++E R+  ++  S+D GF  A S+I D +IT LI+
Sbjct: 367 LPGIAGFILSIGMAVDANVLIFERIKDELRRGNTLIRSIDNGFKEAVSSILDGHITTLIS 426

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              LFF G G V+GFA T+G+ +++S+FTA++  R ++ F++ Y+ ++ 
Sbjct: 427 CGALFFLGTGLVKGFAATLGIGVVLSLFTALTCTRTLLRFLMSYQGLRK 475



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 78/176 (44%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E +R+ ++  +   + + +++ + ++    L A+  L L     L  +AL  
Sbjct: 304 TIGPTLGAENVRRSLIAALSGLLLVGVFMVVTYRL-AGLVAVMALGLYALFNLAAYALIP 362

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++      +    ID    E +   +  
Sbjct: 363 VTLTLPGIAGFILSIGMAVDANVLIFERIKDELR---RGNTLIRSIDNGFKEAVSSILDG 419

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS   +   G  ++  FA  +  G+V++  +++     +L F+  ++    
Sbjct: 420 HITTLISCGALFFLGTGLVKGFAATLGIGVVLSLFTALTCTRTLLRFLMSYQGLRK 475


>gi|288574629|ref|ZP_06392986.1| protein-export membrane protein SecD [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570370|gb|EFC91927.1| protein-export membrane protein SecD [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 464

 Score =  164 bits (414), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 139/490 (28%), Positives = 228/490 (46%), Gaps = 57/490 (11%)

Query: 41  KNRISLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQN 96
           K RI LGLDL+GG+H+VL+    DE+      ++     LR+ + + G+    +++  Q+
Sbjct: 27  KGRIHLGLDLKGGAHIVLQAKGTDENPLTGDSVERLLAVLRNRVDQYGVSEPLIQREGQD 86

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           ++ +        E   + +         ++             E   S    Q  + +  
Sbjct: 87  RVIVDLPGVENPEQALELIGKTALLEFRQVLQATSALPPKAQRENYDSDEEYQAAVSRWN 146

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
               ++     R R +    S + +    + RI +  P       L+    T   +    
Sbjct: 147 EVKADRDELESRLRSEASSESGAVVGSDEAGRIYLLGPVYVGGKDLKDAKATYDNLGRPV 206

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
           V    +  G         ++ GNQ      + + G  ++                     
Sbjct: 207 VSLEFNDDGAKLFDSATAENVGNQI----AIVLDGTVVS--------------------- 241

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
                                       APV+ + I  G AQISG FT E A  LA MLR
Sbjct: 242 ----------------------------APVVQERISGGAAQISGRFTPEEARNLAIMLR 273

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP+ ++++E R+VG  LG+DSI  G  A + G  L++LFM++ Y   G+ AD ++ +
Sbjct: 274 AGALPVPVDVLENRSVGPTLGADSINSGLKAGLIGCALVILFMLLYYRILGIAADIALSV 333

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
            +++  ALL    ATLTLP IAGI+L IG+AVD NIL+ ERI+EE R  ++ F SLD GF
Sbjct: 334 TILILFALLISFKATLTLPGIAGIILTIGMAVDGNILIFERIKEEYRDGKTPFASLDSGF 393

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            +A+ TI D+N+T LIA  VL++FG G +RGFA+T+   I+ S+F+A+ + R ++  ++ 
Sbjct: 394 KKAFKTILDANVTTLIAAAVLYYFGSGPIRGFALTLAFGIVASVFSAVLVTRVLLQVMVS 453

Query: 517 YKKMKSIDIN 526
           +  + S+   
Sbjct: 454 HNSIPSLARR 463



 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 74/168 (44%), Gaps = 4/168 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I  G+   +I    +++++ + ++    + A   L + I         F 
Sbjct: 288 SVGPTLGADSINSGLKAGLIGCALVILFMLLYYRIL-GIAADIALSVTILILFALLISFK 346

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  +++++R+++    Y    +    +D    +     +  
Sbjct: 347 ATLTLPGIAGIILTIGMAVDGNILIFERIKEE---YRDGKTPFASLDSGFKKAFKTILDA 403

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++   I+   +  +G   I  FA+ +AFGIV +  S++ +   +L  +
Sbjct: 404 NVTTLIAAAVLYYFGSGPIRGFALTLAFGIVASVFSAVLVTRVLLQVM 451


>gi|121725861|ref|ZP_01679161.1| protein-export membrane protein SecF [Vibrio cholerae V52]
 gi|147671786|ref|YP_001215471.1| protein-export membrane protein SecF [Vibrio cholerae O395]
 gi|153211942|ref|ZP_01947789.1| protein-export membrane protein SecF [Vibrio cholerae 1587]
 gi|153829190|ref|ZP_01981857.1| protein-export membrane protein SecF [Vibrio cholerae 623-39]
 gi|262168540|ref|ZP_06036236.1| protein-export membrane protein SecF [Vibrio cholerae RC27]
 gi|121631626|gb|EAX63994.1| protein-export membrane protein SecF [Vibrio cholerae V52]
 gi|124117018|gb|EAY35838.1| protein-export membrane protein SecF [Vibrio cholerae 1587]
 gi|146314169|gb|ABQ18709.1| protein-export membrane protein SecF [Vibrio cholerae O395]
 gi|148875303|gb|EDL73438.1| protein-export membrane protein SecF [Vibrio cholerae 623-39]
 gi|227015245|gb|ACP11454.1| protein-export membrane protein SecF [Vibrio cholerae O395]
 gi|262023069|gb|EEY41774.1| protein-export membrane protein SecF [Vibrio cholerae RC27]
          Length = 300

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 82/279 (29%), Positives = 144/279 (51%), Gaps = 6/279 (2%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R+    IS+L  + S+      GLN G+DF GG+    + N  V  S +   L+ +    
Sbjct: 13  RYITGIISVLLMVISLGAFAIKGLNMGLDFTGGMVTEAIINHSVTKSQLMDQLQPVLGES 72

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           +S      E  +++R         A+      +  ++  I     I +  +VG ++ +EL
Sbjct: 73  VSVTPSGEEGRWVIRYPL-----AAEDATPVDIATELHHISDQVQIVSNSMVGSQVGQEL 127

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           I +G + ++I  +++L Y+  RF+W  A GA+  L+ D+   LGFFA+  +EFNLT  AA
Sbjct: 128 IDQGGLALLICLLSILAYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAA 187

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           VL ++GYS+ND +++ DR+R+ + L        D+ D++I  T  R++ TS    +++  
Sbjct: 188 VLAVLGYSLNDSIIISDRIRE-LLLAKQQTPTADINDQAIIATFSRTMVTSGTTLMTISA 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + GG+ +  FAI M  GI+    SSI I   +  ++ 
Sbjct: 247 LWLMGGAPLQGFAIAMFIGIISGTWSSISIGTVLPEWLG 285


>gi|300694208|ref|YP_003750181.1| multidrug efflux system, subunit b [Ralstonia solanacearum PSI07]
 gi|299076245|emb|CBJ35559.1| multidrug efflux system, subunit B [Ralstonia solanacearum PSI07]
          Length = 1045

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 83/675 (12%), Positives = 177/675 (26%), Gaps = 39/675 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATTLLMVAILLSGLVAYRMLPLSALPEVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F  S   +    +V   +   
Sbjct: 56  PDVMTSSITAPLERQFGQMPGLKQMTSSSSGGASVITLQFDLSLSLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +      + +L+   I        +    +  +   ++        
Sbjct: 116 GNLLPTDLPMPPIYSKVNPADAPILT-LAITSKTLPLPKLEDIVDTRVAQKLSQLPGIGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  +   +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRIQANTQALAALGLSIDDIRTAIGNANVNGAKGSFDGPMRASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                       +                 I            
Sbjct: 235 LRSAAE--------------------YNTMIVAYKNGAPIRLTDVAQIIDGAENSKLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A          +   +    +  A  L   L+          V          S +  
Sbjct: 275 ANATPAIILNVQRQPGANVIDVVNRAKALLPQLKDTLPANIDMAVLTDRTTTIRASVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFELLLAVALVVMVIFLFLRNVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I            +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYIEDGDPPMEAALKGAKQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ +SILIS   ++++   M   ++R+           +    + + IA
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLRHIPEPEQTRFYHAAGQFLDNVIA 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
            Q+ R   W +       + +I  L   GL Y    KG   +             +S   
Sbjct: 515 -QYGRMLQWVLDRQRTTLLVAIGTLVLTGLLYVYVPKGFFPVQDTGVIQGISDATQSISF 573

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                          K+  V               L   +  I          +   +  
Sbjct: 574 PAMAERQQKLAEVILKDPAVESLSSFIGVDGTNTTLNSGRMLINLKPKDQRDADATEIIQ 633

Query: 660 KISRELIRKGIVGVI 674
           ++  EL +   + + 
Sbjct: 634 RLQPELAKVAGISLF 648



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++ + M+I++++R      +     + L +  T G   L G   N   + A+    G+
Sbjct: 340 LAVALVVMVIFLFLR-NVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +         +   K   +     +  + +    ++P+   G  
Sbjct: 399 VVDDAIVMIENI---ARYIEDGDPPMEAALKGAKQIGFTIISLTFSLIAVLIPLLFMGDV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FAI +A  I+++A  S+ +  
Sbjct: 456 VGRLFREFAITLAVSILISAVVSLTLTP 483



 Score = 45.1 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 15/274 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            +  +         +         V      ++     S       +     + +      
Sbjct: 758  DPQLQQGPQSLYDLRVASTGGQQVPLGAFATVVEQPGSLVVNHQGQFPSATISFNLARGA 817

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +    ++ +      I   +++Q +        +  +   +  ++ + I M I + + ++
Sbjct: 818  SLGAAVDAINAAEQAIGLPASMQTSFQGAALAFQSSLSNELWLILAAIITMYIVLGVLYE 877

Query: 690  WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   I + +          +L   G +  + A+  ++ LIG    + +++ D   + 
Sbjct: 878  STIHPVTILSTLPSAG-VGALLSLLVTGKDMGIIAIIGIILLIGIVKKNAIMMIDFALE- 935

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                   ++ RD I ++        + T+MAA +  LP+ +    G  +     I M  G
Sbjct: 936  -AEREQGMTPRDAIYQACLLRFRPILMTTMAALLGALPLMLGNGVGSELRQPLGITMVGG 994

Query: 805  IVVAASSSIFIAAPILLF-------IYDWRAKNA 831
            ++V+   ++F    I L        + DWR + A
Sbjct: 995  LLVSQVLTLFTTPVIYLAFDSLSHRLRDWRERRA 1028


>gi|289706224|ref|ZP_06502587.1| protein-export membrane protein SecF [Micrococcus luteus SK58]
 gi|289557063|gb|EFD50391.1| protein-export membrane protein SecF [Micrococcus luteus SK58]
          Length = 346

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 122/310 (39%), Gaps = 13/310 (4%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                               R R W    ++L  +         G N GI+F+GG +  V
Sbjct: 3   RFADWGNALYSGRISYPFIQRWRRWFALAALLLVLAGGLTALRGGFNLGIEFRGGSEFTV 62

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 D++     +  +     +           V+ +          +   +      
Sbjct: 63  SQTASTDVAAGERAVTDVLADGHATVTNVAPGTVRVQTEQLD-----DAQTRAVAANLQE 117

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                     +  VGP     + ++ ++G++I  + + +++ + F+ W  +L A+  ++ 
Sbjct: 118 AYGVGQDQVTSTFVGPTWGDAVSQQALIGLVIFVVLVTLFMAVYFRTWKMSLAAVLGMLY 177

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM--KLYTTSISFRDL 760
            +  T G +   G E   +A+   LT++ Y++ D VVV+D++R+N          SF + 
Sbjct: 178 VVALTAGIYGATGFEITPSAIIGFLTILSYALYDTVVVFDKIRENTIGAEEDPERSFVEN 237

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFI 815
           ++ ++N+TL RS+ TS+   + V  +        G   +   A+ +  GI+V   S++F+
Sbjct: 238 VNLAVNQTLVRSITTSVVGILPVGSILFIGAGLLGAGTLRDIALALFVGIIVGTLSTLFL 297

Query: 816 AAPILLFIYD 825
            AP+   +  
Sbjct: 298 QAPLYALLRR 307


>gi|226941734|ref|YP_002796808.1| NolG [Laribacter hongkongensis HLHK9]
 gi|226716661|gb|ACO75799.1| NolG [Laribacter hongkongensis HLHK9]
          Length = 1037

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 62/521 (11%), Positives = 152/521 (29%), Gaps = 39/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N     ++ + +  +GL         +  ++ FP       +                  
Sbjct: 10  NPILATMVMAALAVLGLFS-----WQRLAVEEFPDVRFPIAV---------VSTGYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E  + +           +  + + + F  +         V   +  V
Sbjct: 56  PVVVESEVTRPIEEAVNTISGVKHIRSYSFEGNSTVVVEFDLATDPTVAVQDVRDRVATV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  +     +      +  ++        +    +  S    +Q   ++       +
Sbjct: 116 TGRLRREVDPPTVSRANPNDDPVMTLALASSTLT--PVALSTLADQQVKKRLMQVSGVGE 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++  + DP RL+ L    + +       N                      
Sbjct: 174 VKLVGLSRREVRIDLDPVRLQALGLAASDVVEALNRDNLDTPA----------------- 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
              +V  SG  ++    N           +     G           +           +
Sbjct: 217 --GRVRASGQDISLRVDNRLGNISDFNSLVVASRAGRSIL-LADVATVRDGAEERSSLAL 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +          +     +   T E      A ++A         V          S +  
Sbjct: 274 VNGTPALAIEITAARGANVVATAEAVKAALASMQAALPAGTRVTVLRNTAEQVRLSLANV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T    A L ++++++ +   +  ++   ++ + +I TL  L L G TL + ++  + L
Sbjct: 334 RATLFEGALLTVLIVWLFLGSWRSTVITGLTLPIALIGTLFALKLAGFTLNVMTLLALSL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL +D  I+V E I       +S   +   G       +  + +T +   + + F G 
Sbjct: 394 SIGLLIDDAIVVRENIVRHANMGKSHRQAALDGTHEIGLAVLATTLTVVAVFLPIGFMGG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             G   + F +T+ +++LIS+F + ++   +        + 
Sbjct: 454 IIGQFFQQFGLTVVVAVLISLFVSFTLDPMLSSVWPDPHRH 494



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/153 (18%), Positives = 56/153 (36%), Gaps = 8/153 (5%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + +LI       W   +    TL + +  TL    L G   N+  + A+   IG  +
Sbjct: 340 GALLTVLIVWLFLGSWRSTVITGLTLPIALIGTLFALKLAGFTLNVMTLLALSLSIGLLI 399

Query: 735 NDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG--- 790
           +D +VV    R+N+  +     S R       +E     + T++      LP+   G   
Sbjct: 400 DDAIVV----RENIVRHANMGKSHRQAALDGTHEIGLAVLATTLTVVAVFLPIGFMGGII 455

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           G     F + +   ++++   S  +   +    
Sbjct: 456 GQFFQQFGLTVVVAVLISLFVSFTLDPMLSSVW 488



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 77/226 (34%), Gaps = 12/226 (5%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                               V   ++K +                 +   E     +  + 
Sbjct: 808  DQSREVSLTANLAGSDSRAVFAEIQKILDATPLPPGYAFDFGGEKQDMAESFGYAVQALA 867

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I  I + + +  +F+ +   L  + +L L          L+    NL +V  ++ L+G +
Sbjct: 868  IGVIFIYMILAAQFRSFLQPLAIMVSLPLAFIGVFVALLLWHSTLNLFSVIGIIMLMGLA 927

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ D +        T +     I ++    L   + TS A    +LP+A+    G
Sbjct: 928  AKNGILLIDFIN---HARATGMDKAAAIVEAGQVRLRPILMTSFAMIFGMLPLALALGEG 984

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF----IYDWRAKNAR 832
                   A  +  G+V +   ++ +A P++ +    + +W  +  R
Sbjct: 985  SEARAPMAHAIIGGLVTSTLLTLVVA-PVVYWYLDALGEWTMRRLR 1029


>gi|163792739|ref|ZP_02186716.1| Hydrophobe/amphiphile efflux-1 HAE1 [alpha proteobacterium BAL199]
 gi|159182444|gb|EDP66953.1| Hydrophobe/amphiphile efflux-1 HAE1 [alpha proteobacterium BAL199]
          Length = 1009

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 64/494 (12%), Positives = 145/494 (29%), Gaps = 21/494 (4%)

Query: 58  LEVDEDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIA 112
           +  +        +    +  L   +   E +   S +     Q  IT++F      +   
Sbjct: 1   MTANYPGASAEIVADTVATPLEQEINGVEDMLYMSSQSTANGQAAITITFRLGTDLDKAQ 60

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
             V   +     +L    ++  +VT       +++           ++  S     Q +D
Sbjct: 61  VLVQNRVAIAIPRLPEQAQRLGVVTRKNSPDLMMVIHVYSPDDTRDSLYLSNYAKTQIVD 120

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           ++   +   +          +    +P  +     +  ++       N            
Sbjct: 121 RLARVDGVGEARVFAEREFSMRVWLNPELMAARELSAGEVVAALRANNIQVASGSLNQLP 180

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
           + D    Q  VE    +              +  +    +   +   R         +  
Sbjct: 181 VPDPGAFQLSVETLGRL-------------VEPAQFENIVVKTDADGRITRVRDIARVEL 227

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                     L   V    +   +   +   T +        L           +     
Sbjct: 228 GARDYSTIGYLDTSVALPILIFQRPGSNALATADGVLAAMRDLSRDFPNGVAYEIIYNPT 287

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S      T      LV++V+ + +   +  ++   +I +++I T A+++  G +L
Sbjct: 288 EYIAQSIDEVYRTIFEAVALVVLVVIVFLQTWRAAIIPVLAIPVSLIGTFAVMAAFGFSL 347

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNIT 469
              S+ G+VL IG+ VD  I+V E +     +  S   +          A   I      
Sbjct: 348 NNLSLFGLVLAIGIVVDDAIVVVENVERYLAEGLSPKEAAHKTMDEVGGALIAIALVLSA 407

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             I T  +    G   + FA+T+  + +IS+  +I++  AM   ++R  +        ++
Sbjct: 408 VFIPTAFISGISGQFYQQFALTIASATIISLIVSITLSPAMAALLLRPHRPDHQPTGIMA 467

Query: 530 RFFLIPDCIAIQFM 543
                    A  F 
Sbjct: 468 VIGWPFRTFARGFN 481



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 63/171 (36%), Gaps = 10/171 (5%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               ++   ++ + + + +  +++     L  +  + + +   +      G++ N+     
Sbjct: 835  NTAMIAFSLAVVFVFLLLAAQYESLTLPLAVVLIVPMCLLAAITGVIFRGLDNNILVQIG 894

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             + LIG +  + +++ +  +   +     +S  +   ++    L   + TS A  + VLP
Sbjct: 895  FVVLIGLAAKNAILIVEFAK---QGEEAGLSRMEAAVQAARTRLRPILMTSFAFILGVLP 951

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL---FIYDWRAKN 830
            + +    G  +  +    +  G+V      +       +   ++  WR   
Sbjct: 952  LVLAEGAGAEMRQALGTAVFSGMVGVTLFGLLFTPVFYVVCRWLGSWRRPK 1002



 Score = 38.9 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 57/143 (39%), Gaps = 14/143 (9%)

Query: 690 WYFALGAITTLILDIT---KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           W  A+  +  + + +      +  F   G   N  ++  ++  IG  V+D +VV + + +
Sbjct: 319 WRAAIIPVLAIPVSLIGTFAVMAAF---GFSLNNLSLFGLVLAIGIVVDDAIVVVENVER 375

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP--MAVWG--GSVIGSFAIPMA 802
            +      +S ++   K+++E  G  +        +V      + G  G     FA+ +A
Sbjct: 376 YLAE---GLSPKEAAHKTMDEVGGA-LIAIALVLSAVFIPTAFISGISGQFYQQFALTIA 431

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
              +++   SI ++  +   +  
Sbjct: 432 SATIISLIVSITLSPAMAALLLR 454


>gi|183220791|ref|YP_001838787.1| preprotein translocase subunit SecF [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910891|ref|YP_001962446.1| preprotein translocase subunit SecF [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775567|gb|ABZ93868.1| Preprotein translocase, SecF subunit [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779213|gb|ABZ97511.1| Protein-export membrane protein SecF; putative signal peptide
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 312

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 80/311 (25%), Positives = 148/311 (47%), Gaps = 18/311 (5%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHG--LNYGIDFKGGIQLGVLANRPVDLSVV 594
              I F + +++ + IS L  +    + F+      + +DF GG++  V   +    + +
Sbjct: 1   MYNINFTKYKYFTLSISFLVIVFGFVVTFSKYGGFAHSLDFNGGLRTVVELPKDKSRTDL 60

Query: 595 RSNLESLQIGDISFQNFDGEK---------------NFLVRLQYQPGDSVAQTRVLEMVK 639
            S  +S +I  +       +                     +  +  ++        +  
Sbjct: 61  ESYFQSKKIEAVVILLEKEKNIFQLDVGLGSLSTIETLYKEIPEEKRETSTSAIDRFVQL 120

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +    +P   + + + VG  +  EL   GI  ++ +   +L+Y+ IR ++ FAL +   
Sbjct: 121 LRFEFSLPKEKVLSADQVGAVVGGELTEVGITLLLTTLGIILLYLSIRSQFKFALASAIA 180

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L+ DI  TL       I+ ++  +AA+LTL+GYS+NDK+VV+DR+R+N       ++  +
Sbjct: 181 LVHDILMTLALIGFLQIKPSVPIIAALLTLLGYSINDKIVVFDRIRENAHGKDN-LALSN 239

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +I+ SI++TLGR++ TS    ISV+ + V G + +  FA  + FG++V   SSI+IAAPI
Sbjct: 240 IINVSISQTLGRTINTSFTTMISVVAIIVGGAAELYDFAFILLFGVIVGTYSSIYIAAPI 299

Query: 820 LLFIYDWRAKN 830
                  R K 
Sbjct: 300 SEIYDRLRKKR 310


>gi|198277135|ref|ZP_03209666.1| hypothetical protein BACPLE_03343 [Bacteroides plebeius DSM 17135]
 gi|198269633|gb|EDY93903.1| hypothetical protein BACPLE_03343 [Bacteroides plebeius DSM 17135]
          Length = 1063

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 67/621 (10%), Positives = 173/621 (27%), Gaps = 56/621 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  +G +      L    ++++P   P               + +E  
Sbjct: 8   KRPVMALSISVLILIVGFIS-----LYTLPVEQYPDIAPPT-------------VRVEAT 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVT 116
                    +      L   +   E +   +         +I + F      +  A  V 
Sbjct: 50  YTGANADAVMNSVIMPLEESINGVENMIYITSTATNAGTAEILVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +     + T   +   + ++              +  +    I Q+  
Sbjct: 110 NRVSAAQGLLPSEVTAIGVSTMKRQNSFLQINSLISPDKRYDETFLANYLDINVIPQVKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +                  + P ++ Q     + ++      N        G       
Sbjct: 170 IQGVGDVQLMGDTYSMRIWMK-PDKMAQYGLVPSDVTAVLGEQNTEAPTGSLGE---SSD 225

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  QY ++ K  +                 +    +   +             +      
Sbjct: 226 NVFQYTMKYKGRL-------------KSVEEFENMVIRSQKDGSVLRVKDIAEVELGRES 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +    A  +     +    L   +          I          
Sbjct: 273 YSFHGEADGVPGVTFMVFQVAGANATAVNQEISDLLDDISKDLPEGTEFIQMMSVNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI +++I T A LS+ G ++ + +
Sbjct: 333 ASIDNVVETLVIAIILVVLVVYFFLHDFKSTLIPSISIIVSLIGTFAFLSVAGFSINILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +     S     +       +   +
Sbjct: 393 LFALVLAIGTVVDDAIIVVEAVQAKFDVGYRSSYLATKDAMSDVTMAVVSCTFVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIR------------YKKM 520
            + F GG +      F ITM +++ +S   A+++  A+   +++             +  
Sbjct: 453 PVTFMGGTSGVFYTQFGITMAVAVGLSCINALTLCPALCAMMMKASDTEKSIKSFSGRIR 512

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
            +  ++  +        +   F         + +   +    +  T       + +G + 
Sbjct: 513 AAYTVSFNTMLGKYKKGLMFFFHHRWTVWASLGVATVLLVYLMSTTKTGLVPQEDQGTMM 572

Query: 581 LGVLANRPVDLSVVRSNLESL 601
           + +  +    L+     ++ +
Sbjct: 573 INISTSPGNSLAETNKVMDKV 593



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 98/284 (34%), Gaps = 9/284 (3%)

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
               S+  S  ++              +    + + + +   +  V+   E     +   
Sbjct: 215 APTGSLGESSDNVFQYTMKYKGRLKSVEEFENMVIRSQKDGSVLRVKDIAEVELGRESYS 274

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL--- 665
            + + +    V            T V + +   + +I          I    ++  L   
Sbjct: 275 FHGEADGVPGVTFMVFQVAGANATAVNQEISDLLDDISKDLPEGTEFIQMMSVNDFLFAS 334

Query: 666 IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           I   +  ++I+ I +++ ++     +   L    ++I+ +  T  F ++ G   N+  + 
Sbjct: 335 IDNVVETLVIAIILVVLVVYFFLHDFKSTLIPSISIIVSLIGTFAFLSVAGFSINILTLF 394

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A++  IG  V+D ++V + ++    +   S         ++++     V  +       +
Sbjct: 395 ALVLAIGTVVDDAIIVVEAVQAKFDVGYRSSYL--ATKDAMSDVTMAVVSCTFVFMAVFI 452

Query: 785 PMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           P+   GG+       F I MA  + ++  +++ +   +   +  
Sbjct: 453 PVTFMGGTSGVFYTQFGITMAVAVGLSCINALTLCPALCAMMMK 496



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 65/240 (27%), Gaps = 15/240 (6%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                         +S   +    L        N     +  V +         Q  + E+
Sbjct: 784  DNMFVRNGTEMAPVSQFVTLRSVLGPEIAKRFNLYNTIDVNVNVAEGYSTGEVQKAIKEV 843

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFAL 694
              + +                               I +   +LIY+ +      +   L
Sbjct: 844  AAQVLPSGYGYEYGGMAREEASSGG------AQTVFIYTLCVVLIYLILSCLYESFLVPL 897

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
              I ++   +  +  F  + G+E N+      + LIG      +++ +     ++     
Sbjct: 898  AVILSVPFGLMGSFLFARVAGLENNIYLQTGAIMLIGLLAKTAILITE---YAIERRRKG 954

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            +        +        + T +     +LP+      G +   S A  +  G+++   +
Sbjct: 955  MGIISSAYSAAQARFRPIIMTVLCMIFGMLPLMFSSGAGANGNSSLATGVVGGMLIGTLA 1014


>gi|318041300|ref|ZP_07973256.1| preprotein translocase subunit SecD [Synechococcus sp. CB0101]
          Length = 493

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 128/500 (25%), Positives = 230/500 (46%), Gaps = 55/500 (11%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVN----GFLQMYSDELRSFLKKEGIGVFSMRQ-IQ 95
            + + LGLDLRGGS L L+V     +       L+   D L   +   G+   +++    
Sbjct: 24  NSPLQLGLDLRGGSQLTLQVLPAGAIKQVKGEQLEAVKDVLDRRINGLGVAESTLQSVGD 83

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL--VTTTEKEISIVLSQNNID 153
           +++ L   + +    +A  +               ++ +   +    +  +++       
Sbjct: 84  DQLVLQLPNEQDPSRVAKVLGKPALLEFRAQKAGTEEEMTGLLKLKRQAEAVLNQSRAQQ 143

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
            V     E   E + + +DQ+G+                       S ++QL     ++ 
Sbjct: 144 TVGDQQPEFKTEELAKALDQLGVKVPPGS-----------------SEIQQLEQLLDEVK 186

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
              V                         + +  E++G  L  A            V ++
Sbjct: 187 QRIV------------------------PLYEPAELTGKDLTSAGRQQQQTGSGWDVTLA 222

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN-------QAIPSGKAQISGNFTIE 326
           F+  G R+F E+T+   G    + +     +    +         I  G A I+GNF+ E
Sbjct: 223 FNTDGGRKFAELTQGIAGTGRLLGIVLDGRSISEASVGPEFKPAGITGGAASITGNFSAE 282

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  L   LR GSLP+ + ++E+R +GA LG++++ +   A + GL L+ +FM+V+Y   
Sbjct: 283 EARDLEVQLRGGSLPLPVKVIEQRTIGATLGAENVQRSLSAGLFGLALVAVFMVVMYRLP 342

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           G VA  ++ L  +  LAL +L+  TLTLP IAG +L IG+AVD+N+L+ ER++EE R+  
Sbjct: 343 GFVAVVALALYALFNLALYALIPVTLTLPGIAGFILSIGIAVDANVLIFERVKEELRRGN 402

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           ++  S+D GFS A+S+I D ++T LI+   LF  G G V+GFA+T+G+ +++S+FTA+S 
Sbjct: 403 TLIRSIDAGFSLAFSSILDGHVTGLISCAALFALGTGLVKGFALTLGIGLVLSLFTALSC 462

Query: 507 VRAMMIFIIRYKKMKSIDIN 526
            R ++  ++ Y  ++     
Sbjct: 463 TRTLLRLLMGYSGLRRPTFF 482



 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 73/178 (41%), Gaps = 4/178 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +G  +  E +++ +   +     + +++ + ++      A+  L L     L  +AL
Sbjct: 305 QRTIGATLGAENVQRSLSAGLFGLALVAVFMVVMYRLP-GFVAVVALALYALFNLALYAL 363

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             +   L  +A  +  IG +V+  V++++R+++ ++      +    ID   +      +
Sbjct: 364 IPVTLTLPGIAGFILSIGIAVDANVLIFERVKEELR---RGNTLIRSIDAGFSLAFSSIL 420

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +   IS   +   G  ++  FA+ +  G+V++  +++     +L  +  +     
Sbjct: 421 DGHVTGLISCAALFALGTGLVKGFALTLGIGLVLSLFTALSCTRTLLRLLMGYSGLRR 478


>gi|284991597|ref|YP_003410151.1| protein-export membrane protein SecD [Geodermatophilus obscurus DSM
           43160]
 gi|284064842|gb|ADB75780.1| protein-export membrane protein SecD [Geodermatophilus obscurus DSM
           43160]
          Length = 566

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 109/535 (20%), Positives = 200/535 (37%), Gaps = 26/535 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   L  +    GL+    +                    LGLDLRGG+ + L    
Sbjct: 9   RRYFGAFLLVVAVLYGLVFLTGD---------------TRTPQLGLDLRGGTTVTLTAAT 53

Query: 63  DD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA---DKVT 116
            D        L++    +   +   G+    +    +   +        E          
Sbjct: 54  PDGQAPDPTELELARQIIEQRVNGLGVAEAEVVTEGDSNIVISVPGDDGEQARELGQTAQ 113

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           L  + V                 E       +  +       A                 
Sbjct: 114 LRFRPVVQGPEPAAPAAEETPAGESAAPTDAAGESAAPADPAAPSDPAAPSDPAAPADPA 173

Query: 177 SESTIQRLGSHRI-LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
           + S         +    LP    P   R+                  +            
Sbjct: 174 APSDPAVPSDGAVADPSLPEPGAPPVTREEAAAQYATLTCDPEDTTPEVDLPESHVAACT 233

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            DG+   +     I G  ++ A+A     T + VV + FD      +   T  N+G  +A
Sbjct: 234 EDGSAKYLLGPAIIEGTQVSDASAGTQQATGEWVVLLDFDSDAEATWAAYTAANVGNNVA 293

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
             LDGRV++AP I  AI S    I+G+F  E+A  LA  LR G+LP+       +++  +
Sbjct: 294 FTLDGRVISAPTIQGAITSNPTTITGSFDQESAEELANQLRYGALPLTFTQATAQSISTE 353

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL----LGAT 411
           LG++ +  G  A   G+ L+ ++ ++ Y   GLV   S+ L+ ++  A+L +    +G T
Sbjct: 354 LGAEQLQAGLIAGAIGIALVFVYALLYYRLLGLVMIASLVLSAVVVYAVLVVLGRQIGFT 413

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L+L  IAG ++ +G+  DS ++  ER+++E R+ +++  ++   + RA  TI  ++  + 
Sbjct: 414 LSLAGIAGFIVSLGITADSFVVYFERLKDEIREGRTLRSAVPRAWVRARRTILSADAVSF 473

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +A  +L+    G V+GFA T+G+S ++ +         +M  + RY+   S   +
Sbjct: 474 LAAAILYVLAIGDVKGFAFTLGMSTVLDLVVVFLFTHPLMAVLARYRVFGSSRFS 528



 Score = 96.7 bits (238), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 85/275 (30%), Gaps = 10/275 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +          + +                  +V  +   +L    IS     G   
Sbjct: 252 VSDASAGTQQATGEWVVLLDFDSDAEATWAAYTAANVGNNVAFTLDGRVISAPTIQGAIT 311

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                     D  +   +   ++     +    T    + +  ++  E ++ G++   I 
Sbjct: 312 SNPTTITGSFDQESAEELANQLRYGALPL--TFTQATAQSISTELGAEQLQAGLIAGAIG 369

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL----FGIEFNLTAVAAVLTLIGY 732
              + +Y  + ++    L  I +L+L          +     G   +L  +A  +  +G 
Sbjct: 370 IALVFVYALLYYRL-LGLVMIASLVLSAVVVYAVLVVLGRQIGFTLSLAGIAGFIVSLGI 428

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           + +  VV ++R++  ++      + R  + ++        +     +F++   + V    
Sbjct: 429 TADSFVVYFERLKDEIRE---GRTLRSAVPRAWVRARRTILSADAVSFLAAAILYVLAIG 485

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  FA  +    V+          P++  +  +R
Sbjct: 486 DVKGFAFTLGMSTVLDLVVVFLFTHPLMAVLARYR 520


>gi|119898860|ref|YP_934073.1| RND efflux transporter permease [Azoarcus sp. BH72]
 gi|119671273|emb|CAL95186.1| RND efflux transporter, permease protein [Azoarcus sp. BH72]
          Length = 1063

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 58/503 (11%), Positives = 135/503 (26%), Gaps = 28/503 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLGGLLAMF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T+ F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLALTVHFRLGMDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++           A       +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGVTTVKSSPTLTLVVHLISPDDRYDATYLRNYAVLNVKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP+++ Q   T + +       N      + G          Q+
Sbjct: 176 EVSIWGAGNYAMRVWLDPNKVAQRGLTASDVVRAIREQNVQVAAGVIGASPTLPDVPLQF 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 +    A      
Sbjct: 236 SVNAQGRLKTEV-------------EFRDIVLKTAADGGVTRLGDVARVELDAAEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +            A L+          +E         S   
Sbjct: 283 LLDNKPAIGMGIMQAPGANALAVSAAVRDAMAELKQDFPSSVDYRIEYDPTQFVRASIKA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T  L+   G ++   S+ G+V
Sbjct: 343 VIVTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSIVGTFGLMLAFGYSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAAGLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMT 462

Query: 482 GGAVRGFAITMGLSILISMFTAI 504
           G   + +        + ++ +A 
Sbjct: 463 GLTGQFYKQFAMTIAISTVISAF 485



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 60/148 (40%), Gaps = 7/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + NL     ++ L+G S  + +++ +  R+  
Sbjct: 903  SLTLPLAVIMIVPMSILAALTGVWLTAGDNNLFTQIGLMVLVGLSAKNAILIVEFARE-- 960

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     + ++   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 961  -LELQGSTPKEAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGVAVFFGM 1019

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            +      +F+  P+   +     + +++
Sbjct: 1020 LGVTLFGLFL-TPVFYVLLRSLGRGSKL 1046



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T G    FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFGLMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S RD   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 425 A---GLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 481

Query: 807 VAASSS 812
           ++A +S
Sbjct: 482 ISAFNS 487


>gi|39933176|ref|NP_945452.1| putative multidrug-efflux transport protein [Rhodopseudomonas
           palustris CGA009]
 gi|192288533|ref|YP_001989138.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris TIE-1]
 gi|39652801|emb|CAE25540.1| putative multidrug-efflux transport protein [Rhodopseudomonas
           palustris CGA009]
 gi|192282282|gb|ACE98662.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris TIE-1]
          Length = 1049

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 76/622 (12%), Positives = 173/622 (27%), Gaps = 38/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +   +G L  L     +  + + P  +P                      
Sbjct: 9   RPRLAAVIALVTTLVGALALL-----RIPVAQLPDIVPPQVR---------VSTTYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +     + K      S     +  + +SFA     +     V   +Q 
Sbjct: 55  AEVLESTVAQPIEAKVVGVDKMIYMKSSSGNDGSYTLDVSFALGTNPDINTVNVNNRVQN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   +         + +   +        +  +   +   +D++       
Sbjct: 115 ALSQLPSEVRLQGVTVQKRSSSMLQVINMSSTGQKYDQLFLTNYGLINVLDELARVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    +    D  +L  L    + +       N        G R + D    Q+
Sbjct: 175 EAALFGRYAYSMRIWFDIEKLSSLGLVPSDVVAAISAQNVQAPVGRIGARPVPDDQKFQF 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  ++             K  +    +                 +           
Sbjct: 235 NLQTQGRLT-------------KPEEFGAIVLRANADGSVLKVSDVARVELGAQNADTYA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T          LR          V          + S 
Sbjct: 282 RLNGDPTIGIGIFLAPGANAINTAAAINAKLDTLRPRFPESVQARVVYDATVFVNDTISA 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  L+   ++ +++I T A+L   G ++   S+  +V
Sbjct: 342 VLHTLFEAFALVAVVVFLFLGNLRATLIPIIAVPVSLIGTFAVLIAFGTSVNTVSMLALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     +    S   +     ++  + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEEPELSPADATKKAMAQVTAPIIAITLVLLSVFVPIGF 461

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRF 531
                G   R FA+T+  ++LIS   A+++  AM          R   M+ +        
Sbjct: 462 LPGIMGELFRQFAVTISAAMLISAVNALTLSPAMCALFLRHEGQRRGFMQKVGRGIDRAR 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 + I   R     + ++   +      L T       + +G   + V       +
Sbjct: 522 DGYTSTVRIALRRPALSVLAVAACGAGIWGLSLTTPSGFLPEEDQGAFFINVQLPDGASV 581

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
           +   + +  ++           
Sbjct: 582 ARTEATVIEVEKIVKQMPEVRD 603



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 66/167 (39%), Gaps = 9/167 (5%)

Query: 669  GIVGVIISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G  G I++   +  Y   + +   W   +  + ++ + +        +  +  +L A   
Sbjct: 868  GKTGYILALAVIFAYLFLVALYESWVIPVPVLLSVSIAVLGAFAGILVGRVTLDLYAQIG 927

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LI  +  + +++ +  ++  +     +S +   +          + TS+A  + ++P
Sbjct: 928  LVVLIALAAKNGILIVEFAKEQREA---GLSIKAAAEMGAKLRFRAVMMTSIAFILGLVP 984

Query: 786  MAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +    G+ +    + + P+  G++ A+   I +   + +     R K
Sbjct: 985  LVWADGAAMLARRNLSTPVFAGMLTASLIGIILIPMLYVVFQSLREK 1031



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 82/245 (33%), Gaps = 5/245 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +S V       Q  D   +        +        +++     +      +    P S 
Sbjct: 264 VSDVARVELGAQNADTYARLNGDPTIGIGIFLAPGANAINTAAAINAKLDTLRPRFPESV 323

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
                        + I   +  +  +   + + +++        L  I  + + +  T  
Sbjct: 324 QARVVYDATVFVNDTISAVLHTLFEAFALVAVVVFLFLGNLRATLIPIIAVPVSLIGTFA 383

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               FG   N  ++ A++  IG  V+D +VV + + + +      +S  D   K++ +  
Sbjct: 384 VLIAFGTSVNTVSMLALVLAIGIVVDDAIVVVENV-ERVMEEEPELSPADATKKAMAQVT 442

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +  ++      +P+       G +   FA+ ++  ++++A +++ ++  +       
Sbjct: 443 APIIAITLVLLSVFVPIGFLPGIMGELFRQFAVTISAAMLISAVNALTLSPAMCALFLRH 502

Query: 827 RAKNA 831
             +  
Sbjct: 503 EGQRR 507


>gi|292670164|ref|ZP_06603590.1| RND superfamily drug:proton (H+) antiporter [Selenomonas noxia ATCC
           43541]
 gi|292648116|gb|EFF66088.1| RND superfamily drug:proton (H+) antiporter [Selenomonas noxia ATCC
           43541]
          Length = 1063

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 81/656 (12%), Positives = 167/656 (25%), Gaps = 31/656 (4%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
              + ++P   P                         VN  +    +E  +  +      
Sbjct: 29  SLPIAQYPQISPPTV---------AVSANYVGASAAVVNETVAQVIEEQINGTQGMDYMS 79

Query: 89  FSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
            +        ++++F      +  A KV     G N+ L    +   + T          
Sbjct: 80  STSDDTGRYSLSVTFEVGTDGDMDAVKVQNNAAGANASLPSSVQAAGVTTRKSSGQMAYF 139

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
                +                 +D I       +          +    +P RL +L  
Sbjct: 140 VSMYSEDGTYDRAFMKNYATLYFLDAIKRVNGVGEVQVFGA-DYAMRVWMNPDRLAELGL 198

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           T A ++      N        G     +    Q+  + +  ++                +
Sbjct: 199 TVADITTAINEQNVQAPAGTVGGMPTVNGQEKQFTGKVQGRLT-------------TPEE 245

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
               I                 I                          +  +   T+  
Sbjct: 246 FGNVIIASGKDGTFVRLKDVARIETGERSNNIVAKFNGYPAVGFGIQLTSDANAMTTLAE 305

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
              +         P         +      S +    T      LV++V+F+ +   +  
Sbjct: 306 VRKILEDAEKTFPPGLKMKSVFDSTDYINASITEVVHTFVEALLLVVLVIFLFLQSWRAT 365

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           L+   ++ +++I T     LL  ++   ++  +VL IGL VD  I+V E +        S
Sbjct: 366 LIPLLAVPVSLIGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIVVIENVEHHMESGLS 425

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAI 504
              + +         +           V + F GG      + FA+T+ +S+ +S F A+
Sbjct: 426 PIDATERAMDEVQGPVVAIAFVLAAVFVPVAFLGGMMGVLYKQFALTIAISMALSAFVAL 485

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           ++  A+   +                     D     F R R   +GI   F   S   +
Sbjct: 486 TLTPALCAMM----LKPKKGNEKNGILGRFFDRFNNWFDRTRKGYIGIVTNFIRKSRIAI 541

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
               +  G+       L        D   +   ++       +      +K      +  
Sbjct: 542 VFLLIVCGLTAIIYRNLPTTFVPEEDQGYLMIAIQLPPGTSTNQTQKTVDKIQQAAQREI 601

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            G S   +     +                +    + S        VG +    AM
Sbjct: 602 KGQSAVMSINGFDILAGGANSNGAVVFVGMKDWSQRTSLYESVAAAVGTMFRVGAM 657



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 63/147 (42%), Gaps = 6/147 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T G F L     N   + A++  IG  V+D +VV + +    
Sbjct: 361 SWRATLIPLLAVPVSLIGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIVVIENV---E 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGI 805
               + +S  D  +++++E  G  V  +       +P+A  GG   V+   FA+ +A  +
Sbjct: 418 HHMESGLSPIDATERAMDEVQGPVVAIAFVLAAVFVPVAFLGGMMGVLYKQFALTIAISM 477

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++A  ++ +   +   +   +  N +
Sbjct: 478 ALSAFVALTLTPALCAMMLKPKKGNEK 504



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/476 (9%), Positives = 135/476 (28%), Gaps = 31/476 (6%)

Query: 378  FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
             MI +    G   + +      +  A    +     + SI G  +  G A  +  +V   
Sbjct: 571  LMIAIQLPPGTSTNQTQKTVDKIQQAAQREIKGQSAVMSINGFDILAGGANSNGAVVFVG 630

Query: 438  IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
            +++ +++            +       ++    +IA       G G V G+++ +     
Sbjct: 631  MKDWSQRTSLYESVAAAVGTMFRVGAMEAPEALVIAINPPALPGLGNVGGWSLELQDMSG 690

Query: 498  ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
             +      IV A++    +  +++ +              I  + ++     +       
Sbjct: 691  HTDLELNDIVNAILAEANKRPELQGVRTTFKINAPSYQYEIDREKVKNLGVQLSDVFTAL 750

Query: 558  ICSICLLFTHGLNY-------GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              +      +  N         +      +    A + V +   +  +  L         
Sbjct: 751  QVNFGGYEVNDFNQFGRTYKVVLQSDVLYRTEAEAAKFVFVRNSQGGMVPLDTLLKPKLT 810

Query: 611  FDGE-----KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                                  S   +        +I +    S          +  ++ 
Sbjct: 811  TGPTQISRFNGARSITFQGSSGSGYSSGEAMAAITEIVQKHAGSGFNIEWSGQSREEQKS 870

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV- 723
                +  + ++ + + + +   ++ W      + T+   I   L    +  + F    + 
Sbjct: 871  ADSTMQVLALALVFVFLCLAALYESWSVPFAVLFTVPTGIFGALFSEYILALIFGTIGIP 930

Query: 724  -----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                         V+ +IG +  + +++ +  +         +       ++    L   
Sbjct: 931  AAGYQNSVYMQIGVIMVIGLAAKNAILIVEFAK---VRVDRGMDPLKAAIQAAGLRLRPI 987

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + TS A  I  LP+ +    G +      + +  G++ A    IF+   + + +  
Sbjct: 988  LMTSFAFIIGCLPLCMASGAGAAARNGMGVAVVGGMLFATIFGIFLIPVLYVIVDR 1043


>gi|315123382|ref|YP_004065388.1| AcrAB-TolC efflux pump [Pseudoalteromonas sp. SM9913]
 gi|315017142|gb|ADT70479.1| AcrAB-TolC efflux pump [Pseudoalteromonas sp. SM9913]
          Length = 1049

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 77/698 (11%), Positives = 182/698 (26%), Gaps = 49/698 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G +        Q  +  +P  +P   +                 
Sbjct: 9   QRPIFAAMLSLIILIAGSISLF-----QLPVSEYPEVVPPTVVVT-------------AS 50

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L   +   E +     +   +    +T++FA     +    +V 
Sbjct: 51  YPGANPTVIAQTVATPLEQEINGTENMLYMFSQATSDGRMTLTVTFALGTDLDRAQVQVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  + ++  +V         ++      Q        S        D+I  
Sbjct: 111 NRVNSALPRLPQEVQRLGVVAEKSSPDLTMVVHLYSPQNSHDTAYLSNYADLNIKDEIAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P  L     T + +       N        G + + + 
Sbjct: 171 LPGVGDIRLFGGGKYAMRVWLNPDALASRELTASDVVNALRSQNQQVAAGSLGAQPISND 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q L+  K  ++ I              +    I       +         +      
Sbjct: 231 SQFQILLNVKGRLNSIE-------------EFKQVIIKVGEQGQLTRLSDVARVDLGQDS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +      A L           +         
Sbjct: 278 YALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKDFPAGVEYDIVYDPTVFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           GS      T      LV+IV+ + +   +  ++   ++ +++I T A++  LG ++   S
Sbjct: 338 GSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +        S   +  +  +     I    +      + 
Sbjct: 398 LFGLVLAIGIVVDDAIVVVENVERNIEDGLSPLEATRVAMTEVTGPIIAIALVLCAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIF----------IIRYKKMKSI 523
             F     G   + FA+T+ +S +IS F ++++  A+                    K  
Sbjct: 458 TAFITGLSGQFYKQFALTITISTVISAFNSLTLSPALAALLLKSHDAEPDAFTRVLNKLF 517

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                  F  + D  A  + +     + +S++  +  I L+      +     G I    
Sbjct: 518 GRWLFQPFNRVFDRGAKGYEKLVQKLIRMSVVVMVAYIALVGGTIKLFDAVPGGFIPQQD 577

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                    +  +         +        +   V                      + 
Sbjct: 578 KQYLVAIAQLPDAASLDRTEAVVKQMQQIALEVPGVANTVAFPGLSVNGFTNSPNSGIVF 637

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +     +    +        + +    +  + +A+ 
Sbjct: 638 TPLAPFAERTDPSMSASAIAAQLNQRFAAIDEAFVAVF 675



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 80/232 (34%), Gaps = 17/232 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   D   +R+ L++     +      G     +  Q +   +         V+  I 
Sbjct: 270 RVDLGQDSYALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKDFPAGVEYDIV 329

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
               +    + + V   +   ++   IV ++               W  ++  +  + + 
Sbjct: 330 YDPTVFVRGSIDAVIATLLEAIVLVVIVVIV-----------FLQTWRASIIPLIAVPIS 378

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T       G+  N  ++  ++  IG  V+D +VV + + +N+      +S  +    
Sbjct: 379 LIGTFAVMQWLGVSINTLSLFGLVLAIGIVVDDAIVVVENVERNI---EDGLSPLEATRV 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           ++ E  G  +  ++      +P A      G     FA+ +    V++A +S
Sbjct: 436 AMTEVTGPIIAIALVLCAVFIPTAFITGLSGQFYKQFALTITISTVISAFNS 487



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 51/144 (35%), Gaps = 7/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L      G + N+    A++ L+  +  + +++ +  +   
Sbjct: 903  SLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFAKD-- 960

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
              + T +S  + +  +    L   + TS+A    V+P+ V            M   +   
Sbjct: 961  -KHDTGLSHLEAMLAACRLRLRPILMTSIAFTAGVIPL-VLATGAGAEMRHAMGNAVFSG 1018

Query: 809  AS-SSIF--IAAPILLFIYDWRAK 829
                ++F  +  P+   +   + +
Sbjct: 1019 MIGVTVFGLLFTPVFYMLVVKKQR 1042


>gi|197334272|ref|YP_002156397.1| acriflavin resistance protein [Vibrio fischeri MJ11]
 gi|197315762|gb|ACH65209.1| acriflavin resistance protein [Vibrio fischeri MJ11]
          Length = 1036

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 66/648 (10%), Positives = 176/648 (27%), Gaps = 40/648 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVVAIVLSLLLCVFGAVS-----FSKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++I ++F            +   +  
Sbjct: 55  SATIIESQITTVLEDQLSGISGIDEIESTTRNSMSRIMITFDLGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +    +    E +  I R  +D+  +     
Sbjct: 115 AQRSLPDEADDPIVFKNNGSGEASLYINLSSS--VMDRTELTDYIERVLVDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SVDVSGGLYKVMYVKLQPDLMAGRGVTASDITAALRSENIESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V    I ++  T     K       +          +     ++           
Sbjct: 217 ---GEVRNDAIVMSVRTERLYNKAEDFNYLVVKTASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +            A ++          ++  +      S + 
Sbjct: 274 KSDGVVNVSMGIVPQSDANPLDVANLVHEEVAKIQQFLPKGTRLAIDYDSTVFIERSIAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHLEKGESPLLAAYKGAREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + +S+L S   A+++   +   I++     +            L   
Sbjct: 454 GMVGLLFTEFSVLLAMSVLFSSLIALTLTPVLGSKILKANVKPNRFNLFIDKVFSALERS 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                     +  +   I+ +           +   +  +    +     R  D +    
Sbjct: 514 YRKAVSKAVAWRLLAPVIILACIGGSYGLMQYVPSQLTPQEDRGVLFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              ++ I +       G+          P            V   + +
Sbjct: 574 MSSNMDIVEERLMPLLGKGFLKSFSIQSPAFGGNAGDQTGFVIMILED 621



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDAIVMSVRTERLYNKAEDFNYLVVKTASDGTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V  +V +++ +I           +    +  + R        +
Sbjct: 279 VNVSMGIVPQSDANPLDVANLVHEEVAKIQQFLPKGTRLAIDYDSTVFIERSIAEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHLEKGESPLLAAYKGAREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVLFSSLIALTLTPVLGSKILKANVKPNR 498



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 47/140 (33%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        L     N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLLLMNQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    +     I  +    L   + T+       +P+ V    G     +    + FG+
Sbjct: 931  QLRDKGVELEQAIVDASARRLRPILMTAFTTLAGAIPLIVSTGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYD 825
              A   ++F+   +   I  
Sbjct: 991  AFATLVTLFVIPAMYRLISG 1010


>gi|71908571|ref|YP_286158.1| acriflavin resistance protein [Dechloromonas aromatica RCB]
 gi|71848192|gb|AAZ47688.1| Acriflavin resistance protein [Dechloromonas aromatica RCB]
          Length = 1029

 Score =  164 bits (413), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 60/540 (11%), Positives = 150/540 (27%), Gaps = 44/540 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      ++   +   G++           +   P+                  +   L 
Sbjct: 9   RRPVMTTLMMVALLIFGVI-----GYRALPVSELPAVDFPT-----------ISVTANLP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + +   +    +   S +        +  Q    ITL F+  R  +  A  V   +
Sbjct: 53  GASPETMAAAVATPLEGQFSTIAGLDSMTSTSAQGSATITLQFSLDRNIDAAAQDVQSAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                KL  +                I     +   +    +        Q   ++    
Sbjct: 113 SAALRKLPPNMPTPPSFRKVNPADSPIFYIAMSSPTLPLSLVH--EYAETQLAQRLSTVP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q          +  + +P ++        ++       N ++           D   
Sbjct: 171 GVAQVQIYGSQKFAVRVQANPDQMAARGIGIDELQQAIAQGNVNQPVGQL------DGSR 224

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + ++D  ++S                                           +    
Sbjct: 225 QTFALKDNGQLSNAAAYRPLIVTW--------------RNGAPIRLEDIATPIDSVENTR 270

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                            +   +   T++    +    +A         V      +   +
Sbjct: 271 IASWNVDKRAIVLAIQRQPGANTIETVDAIKRILPSFQAKLPAAVTMKVLFDRSNSIRHA 330

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               + T  +   LV++V+ + +      ++   ++ ++V+ T A++S+LG +L   S+ 
Sbjct: 331 IDDVQFTLILSGFLVIMVILLFLRNLSATVIPSLALPISVVGTFAMMSVLGYSLDNLSLL 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + L +G  VD  I++ E I       +  F +   G      TI    I+ +   + + 
Sbjct: 391 ALTLSVGFVVDDAIVMLENIVRHVEAGEPPFQAAIKGAKEIGFTIISMTISLIAVFIPVL 450

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F     G  +  FA+T+ ++IL+S F ++++   +    +++ +  S             
Sbjct: 451 FMQGIVGRLLHEFAVTICVAILVSGFVSLTLTPMLCSRYVKHAEPDSHGRVFQMFESFFN 510



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 70/204 (34%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           +  ++     ++    T++        I   +       ++   +
Sbjct: 285 IQRQPGANTIETVDAIKRILPSFQAKLPAAVTMKVLFDRSNSIRHAIDDVQFTLILSGFL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +         +     L + +  T    ++ G   +  ++ A+   +G+ V+D +
Sbjct: 345 VIMVILLFLRNLSATVIPSLALPISVVGTFAMMSVLGYSLDNLSLLALTLSVGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +   ++             K   E     +  +++     +P+    G V   + 
Sbjct: 405 VMLENI---VRHVEAGEPPFQAAIKGAKEIGFTIISMTISLIAVFIPVLFMQGIVGRLLH 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ +   I+V+   S+ +   +
Sbjct: 462 EFAVTICVAILVSGFVSLTLTPML 485



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 62/141 (43%), Gaps = 16/141 (11%)

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              LGA+ TL+           +F ++ +L A   V+ LIG    + +++ D   +  +  
Sbjct: 891  AGLGALITLL-----------IFKVDLSLYAFVGVIMLIGIVKKNAIMMIDFALE--RQR 937

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +   + I ++        + T+MAA +  LP+A+    G  V     + +  G++++
Sbjct: 938  KDGMPPGEAIFQASLIRFRPIMMTTMAALVGTLPIALGIGAGAEVRQPLGLAVVGGLMLS 997

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
               ++++   I L++  +  K
Sbjct: 998  QLLTLYLTPVIYLYLDRFTDK 1018


>gi|158425534|ref|YP_001526826.1| hydrophobe/amphiphile efflux-1 [Azorhizobium caulinodans ORS 571]
 gi|158332423|dbj|BAF89908.1| hydrophobe/amphiphile efflux-1 [Azorhizobium caulinodans ORS 571]
          Length = 1059

 Score =  164 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 78/620 (12%), Positives = 178/620 (28%), Gaps = 42/620 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G +        +  + ++P   P               + +    
Sbjct: 10  RPIFAFVISIVVMLLGGVS-----YLRLPVAQYPDIAPPV-------------ITVSGQY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +   EG+   S     +    I+++F      +    +V  
Sbjct: 52  PGASAETVADTVVAPIEQQINGVEGMLYLSSNSSADGRFTISVTFDLGTNLDIAQVQVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   + +L  + ++  +VT       +++            +  S     Q  D +   
Sbjct: 112 RVAIASPRLPSEVQQIGVVTAKSSPDILMVVSLYSPDGSRDGLFISNYANVQIKDVLSRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP RL+ L  T A++       N      +     + +  
Sbjct: 172 DGVGSITVFGSRDYAMQVWLDPQRLQTLNLTAAEVVSALQSQNIQVASGVLNQPPVSNPG 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V     +S              T +   ++   +             +       
Sbjct: 232 AFQIAVRTLGRLS--------------TPEEFGNVVIKQTATALVRLKDVAKVEISAQDY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T        A L           +          
Sbjct: 278 SSTSYLDKYNSIALGVFQRPGSNALATGNAVVAKMAELGKVFPEGLKYGIYYNPTEFISQ 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+ + +   +  ++   +I +++I T  ++ L G +L   S+
Sbjct: 338 SVEAVIHTIFEAIILVVIVVVLFLQTWRAAIIPILAIPISLIGTFFIMKLFGFSLNNLSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            G+VL IG+ VD  I+V E +        S   +          A   I     +  + T
Sbjct: 398 FGLVLAIGIVVDDAIVVVENVERNIASGLSPRDAAYKTMDEVGGALVAISLVLSSVFVPT 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   + FA+T+  S L+S+  ++++  AM   +++        +   ++   +
Sbjct: 458 AFITGISGQFYQQFALTIAGSTLLSLLVSLTLSPAMCALLLKPHAHGEQRVAWYAKP--V 515

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I        G G + + S     +     +  GI   GG          +     
Sbjct: 516 VGFFNIFNRGFEALGNGYAAVVSRLVRIVALVLIVYGGIVAFGGYLFTSTPQGFIPDQDR 575

Query: 595 RSNLESLQIGDISFQNFDGE 614
              + + Q+   S  +   E
Sbjct: 576 GYLIVAAQLPPGSSMSRTEE 595



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/428 (8%), Positives = 119/428 (27%), Gaps = 17/428 (3%)

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            + +   +G          +  ++ E   +          ++        ++I DS +  +
Sbjct: 614  VNIVGFSGATFTNAPNAGAMFVILEPFSQRGGDPTRTATAIQRQLFGKLASIQDSLLIVV 673

Query: 472  IATVVL-------FFFGGGAVRGFAITMGLSILISMFTAISIVRAM--MIFIIRYKKMKS 522
                V        F        G       + + +M  A +    +  +  +      + 
Sbjct: 674  QPPPVNGIGNAGGFRMMIEDRDGQGPLALRNAVYAMMGAAAQTPGLQQVYSLFETSTPQI 733

Query: 523  IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                  ++  ++   ++  F   + +     +                     K    + 
Sbjct: 734  YLDIDRAKAQMLQVNVSDVFSALQSYIGSTYVNDFNLFSRTFRVQVQADAPYRKEVKDIL 793

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
             +  +  +   V     +                +                    + +++
Sbjct: 794  SIRVKNANGDTVPLGSFTTVQDISGPYRLPRYNLYTSAELDGSPAPGYSQGQAIEIMQQL 853

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
               V                +      I    +  + + + +  +++     L  +  + 
Sbjct: 854  AAKVLPQGFAYEWTTLAYQQQRAGNTAIFAFGLGVVFVFLVLAAQYESLTLPLAVVLIVP 913

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + +   LG   L G++ N+      + LIG +  + +++ +  +   +L    +  R+  
Sbjct: 914  MCLVAALGGVILRGMDNNILTQVGFIVLIGLAAKNAILIVEFAK---QLEDQGMGRREAA 970

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + TS+A  + V+P+      G  +  +    +  G++      + I  P
Sbjct: 971  VEAARLRLRPIIMTSLAFILGVVPLVWATGAGAELRQALGTAVFSGMIGVTFFGL-IFTP 1029

Query: 819  ILLFIYDW 826
            +   +  W
Sbjct: 1030 VFYVLARW 1037


>gi|169633157|ref|YP_001706893.1| multidrug ABC transporter [Acinetobacter baumannii SDF]
 gi|169151949|emb|CAP00807.1| putative Multidrug/solvent efflux pump membrane transporter
           [Acinetobacter baumannii]
          Length = 1059

 Score =  164 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 55/503 (10%), Positives = 130/503 (25%), Gaps = 30/503 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVYQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPSNSPLQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 +    +      
Sbjct: 236 NAQGRL---------------TTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAIALVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +           I    +T +   V L F  
Sbjct: 401 LAIGIVVDDAIVVVENVERNIEAGLNPREATYGAMREVSGPIIAIALTLVAVFVPLAFMT 460

Query: 482 GGAVRGFAITMGLSILISMFTAI 504
           G   + +        + ++ +A 
Sbjct: 461 GLTGQFYKQFAMTIAISTVISAF 483



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/395 (10%), Positives = 118/395 (29%), Gaps = 18/395 (4%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
            ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 652  AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 711

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              +   +  M           ++D++ +           +      + G      F+   
Sbjct: 712  AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 771

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                     +          L +         V  S+L ++                   
Sbjct: 772  RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 831

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 832  INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 890

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +  +++     L  I  + + I   L    L   + N+     ++ L+G +  + ++
Sbjct: 891  FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTAGDNNIFTQIGLMVLVGLACKNAIL 950

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +  ++   L     +      ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 951  IVEFAQE---LEMQGATAFRAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 1007

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              + + FG++  +   +F+     + I    +K+ 
Sbjct: 1008 MGVAVFFGMIGVSFFGLFLTPAFYVLIRTLNSKHK 1042



 Score = 45.8 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 363 WRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                ++ R+    ++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 423 A---GLNPREATYGAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 479

Query: 807 VAASSS 812
           ++A +S
Sbjct: 480 ISAFNS 485


>gi|299533215|ref|ZP_07046599.1| acriflavin resistance protein [Comamonas testosteroni S44]
 gi|298718745|gb|EFI59718.1| acriflavin resistance protein [Comamonas testosteroni S44]
          Length = 1066

 Score =  164 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 70/617 (11%), Positives = 169/617 (27%), Gaps = 45/617 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+L           +   P                    +     
Sbjct: 10  RPIATSLLMVAVLISGILA-----YRLLPISALPEVDYPTIQ---------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + I+L FA     +    +V   +   
Sbjct: 56  PDVMTSNVTAPLERQFGQMPGLDQMSSTSSGGASVISLRFALDMSMDVAEQQVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     L +      + VL+   I       I+ +  +  +   ++   +    
Sbjct: 116 TNLLPSDLPMPPLYSKVNPADAPVLT-LAISSPSLPVIKINDLVENRLAPKLSQVKGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P+ L     T   +       N                      
Sbjct: 175 VAIAGARRPAVRIQANPAALASFGMTLDDVRTAISAANVKTAKG---------------S 219

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +     S I  N    +     +  +   + + +      +   D     LA       
Sbjct: 220 FDGPNRASTIDANDQMQSAAEYRNLIIAFKNGNPVRLSDVAQTVDDAENTRLAAWSGTPE 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +          +   +   T++    L   L+          V          S    
Sbjct: 280 TGSKSAVILNIRRQPGANVIDTVDAIKNLLPQLKETLPASIDVQVLTDRTVTIRASVKDM 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+F+ +      L+   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 340 QFELALAIALVVMVIFLFLRSASATLIPSVAVPLSLVGTFGVMYLAGFSINNLTLMALTI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     K +    +   G  +   TI    I+ +   + L F G 
Sbjct: 400 ATGFVVDDAIVMIENIARYVEKGEPPMQAALKGAKQIGFTIISLTISLVAVLIPLLFMGD 459

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------------IRYKKMKSIDINP 527
             G     FAITM ++ILIS   ++++   +   +                   ++    
Sbjct: 460 VVGRLFHEFAITMTVAILISAVVSLTLTPMLCARLLRHQPEGEKKKAESKGFGAAVARFF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +      ++   +       +  +         +     G I     A++
Sbjct: 520 DKVIAEYGRMLTWVLDHSKLTWLVFIATLVVTVLLYFVVPKGFFPEQDTGTIAATTEADQ 579

Query: 588 PVDLSVVRSNLESLQIG 604
            +  + +    ++L   
Sbjct: 580 SISFAAMAERQQALAEH 596



 Score = 89.0 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 81/254 (31%), Gaps = 8/254 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  +          N                     +R Q           +  ++ +  
Sbjct: 254 VRLSDVAQTVDDAENTRLAAWSGTPETGSKSAVILNIRRQPGANVIDTVDAIKNLLPQLK 313

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             +     +Q        I   +      + + I+ + M+I++++R      L     + 
Sbjct: 314 ETLPASIDVQVLTDRTVTIRASVKDMQFELALAIALVVMVIFLFLR-SASATLIPSVAVP 372

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +  T G   L G   N   + A+    G+ V+D +V+ + +    +            
Sbjct: 373 LSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMIENI---ARYVEKGEPPMQAA 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            K   +     +  +++    ++P+   G   G +   FAI M   I+++A  S+ +   
Sbjct: 430 LKGAKQIGFTIISLTISLVAVLIPLLFMGDVVGRLFHEFAITMTVAILISAVVSLTLTPM 489

Query: 819 ILLFIYDWRAKNAR 832
           +   +   + +  +
Sbjct: 490 LCARLLRHQPEGEK 503


>gi|59712188|ref|YP_204964.1| acriflavin resistance plasma membrane protein [Vibrio fischeri
           ES114]
 gi|59480289|gb|AAW86076.1| acriflavin resistance plasma membrane protein [Vibrio fischeri
           ES114]
          Length = 1036

 Score =  164 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 66/648 (10%), Positives = 176/648 (27%), Gaps = 40/648 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVVAIVLSLLLCVFGAVS-----FSKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++I ++F            +   +  
Sbjct: 55  SATIIESQITTVLEDQLSGISGIDEIESTTRNSMSRIMITFDLGYDLNTGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +    +    E +  I R  +D+  +     
Sbjct: 115 AQRSLPDEADDPIVFKNNGSGEASLYINLSSS--VMDRTELTDYIERVLVDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SVDVSGGLYKVMYVKLQPDLMAGRGVTASDITAALRSENIESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V    I ++  T     K       +          +     ++           
Sbjct: 217 ---GEVRNDAIVMSVRTERLYNKAEDFNYLVVKTASDGTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +            A ++          ++  +      S + 
Sbjct: 274 KSDGVVNVSMGIVPQSDANPLDVANLVHEEVAKIQQFLPKGTRLAIDYDSTVFIERSIAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHLEKGESPLLAAYKGAREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + +S+L S   A+++   +   I++     +            L   
Sbjct: 454 GMVGLLFTEFSVLLAMSVLFSSLIALTLTPVLGSKILKANVKPNRFNLFIDKVFSALERS 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                     +  +   I+ +           +   +  +    +     R  D +    
Sbjct: 514 YRKAVSKAVAWRLLAPVIILACIGGSYGLMQYVPSQLTPQEDRGVLFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              ++ I +       G+          P            V   + +
Sbjct: 574 MSSNMDIVEERLMPLLGKGFLKSFSIQSPAFGGNAGDQTGFVIMILED 621



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDAIVMSVRTERLYNKAEDFNYLVVKTASDGTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V  +V +++ +I           +    +  + R        +
Sbjct: 279 VNVSMGIVPQSDANPLDVANLVHEEVAKIQQFLPKGTRLAIDYDSTVFIERSIAEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHLEKGESPLLAAYKGAREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVLFSSLIALTLTPVLGSKILKANVKPNR 498



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 47/140 (33%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        L     N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLLLMNQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    +     I  +    L   + T+       +P+ V    G     +    + FG+
Sbjct: 931  QLRDKGVELEQAIVDASARRLRPILMTAFTTLAGAIPLIVSTGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYD 825
              A   ++F+   +   I  
Sbjct: 991  AFATLVTLFVIPAMYRLISG 1010


>gi|300781063|ref|ZP_07090917.1| protein-export membrane protein SecF [Corynebacterium genitalium
           ATCC 33030]
 gi|300532770|gb|EFK53831.1| protein-export membrane protein SecF [Corynebacterium genitalium
           ATCC 33030]
          Length = 412

 Score =  164 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 137/303 (45%), Gaps = 11/303 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I F+        I++   + SI  +   G N GIDF+GG ++ + A   V   V  + ++
Sbjct: 46  IDFVGRSKLWYLITVALLVISIAAMLIRGFNLGIDFEGGTKMTMPAGDLVAEEVEETFVD 105

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR----VLEMVKKKITEIVPLSTIQNTE 655
           +  +     Q         + +  +             + E  + K              
Sbjct: 106 ATGVTPELTQIVGAGDARSLEINSEHLTQEQIDAARLAIYEQHQPKDAAGEATPDAIGDS 165

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            V       + ++ I+ ++I  IA   Y+ IR +   A+ A+  L++D    +G ++LFG
Sbjct: 166 TVSESWGSTITQRMILSMVIFLIAAAAYVAIRLQRNMAIAAMLALLIDGIIIMGIYSLFG 225

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDLIDKSINETLGRSV 773
           +E     +  +LT++ +S+ D V+V+D++++N    L +   ++ +  + ++N+T+ RS+
Sbjct: 226 LEVTPAMIIGLLTVLTFSIYDTVIVFDKVKENTAGVLDSRRSTYAEEANLAVNQTVMRSI 285

Query: 774 YTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            TS+ + + ++ + V      G   +   A+    G+V    SS+F+A P+L+ + + ++
Sbjct: 286 STSVISALPIIALMVVAVWMLGVGTLQDLALIQLIGVVEGIFSSLFLATPLLVSLTNMQS 345

Query: 829 KNA 831
           K  
Sbjct: 346 KYK 348


>gi|220906943|ref|YP_002482254.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Cyanothece sp. PCC 7425]
 gi|219863554|gb|ACL43893.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 7425]
          Length = 1094

 Score =  164 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 75/572 (13%), Positives = 167/572 (29%), Gaps = 35/572 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I   G +       P   +   P   P               + +   
Sbjct: 12  KRPVLATVCTLLILLAGAICI-----PLLPISYMPPLTP-------------VTVQVSAT 53

Query: 62  EDDFVNGFLQMYSD-ELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      +   +      E +   S    Q+ IT  F+ ++ +      V 
Sbjct: 54  LTGGDAETVENTVTTPIERQINGATNMEYMTSASTATGQSLITAYFSPNQNQSLAQVDVQ 113

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  ++        ++                S  +     D+I  
Sbjct: 114 NRVGIAAPLLPTQVQQQGVLVQKTSPAILLALGVYSPDESLDPKFISNYVDLYINDEITR 173

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                    S ++L  +    DP+ L     T + +       N        G     D 
Sbjct: 174 IPGIALVSYSGQLLYSMRIWLDPNALAGRGLTASDVIRSLQQQNPLIGLGGVGQPPTPDE 233

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               + +    +++ +                V                T    GK  + 
Sbjct: 234 QTFSFTIPSATQLTDVKDFENLVLKVEPNGDLVKLKDVGRAELGAQSYTTAAFTGKVGSD 293

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
               +          +    +  +              LR    P  +            
Sbjct: 294 TKLHQG------VTMLIYQSSDANALDVANAVKEKLDELRQSFPPGLVIEPVFDTTLFVN 347

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV + +++ +   +  +V   +I +++I  LA   + G +L   +
Sbjct: 348 ASTKDVLITLLQAIFLVSLSIYIFLQDWRALVVPVIAIPVSLIGALAFAFVFGFSLNTLT 407

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATV 475
           + G+VL  GL VD  I+V E I E+  +  +   +     +  + + I  S +   +   
Sbjct: 408 MLGLVLATGLVVDDGIVVVEAIVEKIEQGLTPREAALAAMNELSGAVISTSLVLMAVFVP 467

Query: 476 VLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           V FF G      + FA+T+  SI +S F A+S   ++   ++R    K  ++     +F 
Sbjct: 468 VAFFPGTTGRIYQQFALTIAFSIAVSTFNALSFSPSIGALLLRR---KEGEMGGPLGWFF 524

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLF 565
                +  + ++R+  +   ++     +  +F
Sbjct: 525 GHFNRSFDWFKSRYTVLVEYLIGIRYVMIAVF 556



 Score = 90.1 bits (221), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 86/219 (39%), Gaps = 7/219 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +   ++  Q    +++     ++    ++ +  P   +               +  ++ +
Sbjct: 298 QGVTMLIYQSSDANALDVANAVKEKLDELRQSFPPGLVIEPVFDTTLFVNASTKDVLITL 357

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +   + + I+I    W   +  +  + + +   L F  +FG   N   +  ++   G 
Sbjct: 358 LQAIFLVSLSIYIFLQDWRALVVPVIAIPVSLIGALAFAFVFGFSLNTLTMLGLVLATGL 417

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + + +        ++ R+    ++NE  G  + TS+      +P+A + G+
Sbjct: 418 VVDDGIVVVEAIVE---KIEQGLTPREAALAAMNELSGAVISTSLVLMAVFVPVAFFPGT 474

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                  FA+ +AF I V+  +++  +  I   +   + 
Sbjct: 475 TGRIYQQFALTIAFSIAVSTFNALSFSPSIGALLLRRKE 513



 Score = 42.4 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 52/121 (42%), Gaps = 6/121 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + T+ L +   L F  + G+  ++    A++ LIG +  + +++ +   +++   +
Sbjct: 913  PTIIMLTVPLAMMGALAFTLVRGLANDVFCQIALIMLIGLASKNAILIVELANQSL---S 969

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
            T +++      +  E L   + T+++      P+ V    G +   S    +  G++VA 
Sbjct: 970  TGMTYTQAAVHACKERLRPILMTALSGLAGFFPLLVAEGAGANSRWSVGYAVFGGLLVAT 1029

Query: 810  S 810
             
Sbjct: 1030 F 1030


>gi|167569482|ref|ZP_02362356.1| multidrug resistance protein MdtC [Burkholderia oklahomensis C6786]
          Length = 1100

 Score =  164 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 71/622 (11%), Positives = 163/622 (26%), Gaps = 46/622 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL         Q  +   P       +             L    
Sbjct: 10  RPVATTLLALGIALAGLFA-----FVQLPVSPLPQVDFPTIM---------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSMSSVGNARIVLQFNLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMV-VSLTSKTASPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSLSGSANPAVRVELEPQALFHYGIGLEDVRAALSSANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G +      N          ++                 +   +  + +  +
Sbjct: 217 --KGAIEFGPNRYQLYTNDQASQASQYKNLVIAYRNHAAVSLADVSTVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S +  
Sbjct: 275 ANGERAVLVILYRSPGANIIETIDRVKAALPQLTAALPADIKVSPVLDRSRTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG +L   S+  +++
Sbjct: 335 EHTLLIAMSLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSLNNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLSRF 531
             G   R FAIT+ L+I +S+  ++++   M   +           +  + ++       
Sbjct: 455 IVGRLFREFAITLSLAIGVSLVVSLTLTPMMCARLLPEAHDPRDEGRFARWLERGFERMQ 514

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 ++      R   + +    ++     +      +     G +  G+ A++    
Sbjct: 515 RGYERTLSWALRHPRTILMTLVATIALNVFLYIVVPKGFFPQQDTGLMVGGIQADQTTSF 574

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
             ++     +     +  N   
Sbjct: 575 QAMKLKFTEMMRIVSANPNVAN 596



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 96/268 (35%), Gaps = 7/268 (2%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +    +   L+T+           + +    +  V L+ V + ++S++           
Sbjct: 219 AIEFGPNRYQLYTNDQASQASQYKNLVIAYRNHAAVSLADVSTVVDSVEDLRNLGLANGE 278

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               ++  +    + +     ++    ++T  +P     +  +   +  R  +      +
Sbjct: 279 RAVLVILYRSPGANIIETIDRVKAALPQLTAALPADIKVSPVLDRSRTIRASLADTEHTL 338

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I+   +++ +++  + W   L     + + I  T G   L G   N  ++ A++   G+
Sbjct: 339 LIAMSLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSLNNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---SRHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FAI ++  I V+   S+ +  
Sbjct: 456 VGRLFREFAITLSLAIGVSLVVSLTLTP 483



 Score = 44.7 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 92/215 (42%), Gaps = 7/215 (3%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  + + + + E+    TIQ +     +  ++ ++   + ++ +
Sbjct: 869  VATTISFNLPPGVSLSKATQAIYQTMAEVGVPPTIQGSFQGTAQAFQQSLKDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LAAVYIVLGILYESYIHPITILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D     +       S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFA---IDASRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAE 1045

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++V+   +++    + L++   R
Sbjct: 1046 LRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLR 1080


>gi|148239697|ref|YP_001225084.1| preprotein translocase subunit SecF [Synechococcus sp. WH 7803]
 gi|147848236|emb|CAK23787.1| Preprotein translocase SecF subunit [Synechococcus sp. WH 7803]
          Length = 330

 Score =  164 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 56/180 (31%), Positives = 101/180 (56%), Gaps = 5/180 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           Q+ + +GP +  +L+R  ++ ++++   + +YI IR+   FA  A+  L  DI    G F
Sbjct: 146 QSVDTIGPSLGVQLLRSSLISLLVAFTGIALYITIRYDRRFAFLALVALAHDIVIVCGVF 205

Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A  G+    E +     A+LT+ GYSVND VVV+DR+R+  +     +     +D++++ 
Sbjct: 206 AWLGLLTGLEVDSLFAVALLTIAGYSVNDTVVVFDRIRERQREDG-DLPLTVQVDRAVSA 264

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++YTS    + ++ + ++GGS +  FA+ +A G+VV + SSI +A  +L       
Sbjct: 265 TLTRTLYTSGTTLLPLIALILFGGSTLYWFAVALALGVVVGSWSSIALAPSLLSLWPSRS 324


>gi|88808459|ref|ZP_01123969.1| preprotein translocase subunit [Synechococcus sp. WH 7805]
 gi|88787447|gb|EAR18604.1| preprotein translocase subunit [Synechococcus sp. WH 7805]
          Length = 490

 Score =  164 bits (413), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 119/522 (22%), Positives = 211/522 (40%), Gaps = 59/522 (11%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD- 64
           + +IL   I    +L + P                   + LGLDLRGGS L LEV     
Sbjct: 8   FALILALTIAAASVLSSFP-------------------LQLGLDLRGGSQLTLEVQPAGS 48

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQ 120
                   L      L   +   G+   +++    +++ L           A  +     
Sbjct: 49  ITAIKPEQLDAVKLVLERRVNGLGVAESTLQTVGNDQLLLQLPGVTDPSRAARVLGSTAL 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                     ++ +      +     +     D   +     + E + +  + +G+  + 
Sbjct: 109 LEFRAQKPGTEEEMRSLLQLRAQLKSVLAVKADASEADDASINPEELAKVQEALGLDGNA 168

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                  + L++    +   R      T   +         +  G+   + F  +     
Sbjct: 169 NSEEEQLQQLLERTNAEIVDRFEPAALTGKDLVTAGRQQRQNSSGWEVTLGFNAEGGDRF 228

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I+G               +  V   F   G          N           
Sbjct: 229 AKLTQS--IAGTDRLLGIVLDGRPISEASVGPEFKAAGIAGGAATITGN----------- 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                                 FT E A  L   LR GSLP+ + I+E R +G  LG+D+
Sbjct: 276 ----------------------FTAEEARDLEVQLRGGSLPLPVEILEVRTIGPTLGADN 313

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           + +   A ++GLVL+ LFM++ Y   G+VA  ++ L  +  LA+ +L+  TLTLP IAG 
Sbjct: 314 VRRSLIAALSGLVLVGLFMVLTYRLAGVVAVMALSLYALFNLAVYALIPVTLTLPGIAGF 373

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L IG+AVD+N+L+ ER+++E R+  ++  S++ GF  A S+I D ++T LI+   LFF 
Sbjct: 374 ILSIGMAVDANVLIFERVKDELRRGNTLIRSIETGFQEAISSILDGHLTTLISCGALFFL 433

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G G V+GFA T+G+ +++S+FTA++  R ++ F++ Y+ ++ 
Sbjct: 434 GTGLVKGFAATLGIGVILSLFTALTCTRTLLRFLMSYQGLRR 475



 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 78/176 (44%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + +R+ ++  +   + + +++ + ++    + A+  L L     L  +AL  
Sbjct: 304 TIGPTLGADNVRRSLIAALSGLVLVGLFMVLTYRL-AGVVAVMALSLYALFNLAVYALIP 362

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++      +    I+    E +   +  
Sbjct: 363 VTLTLPGIAGFILSIGMAVDANVLIFERVKDELR---RGNTLIRSIETGFQEAISSILDG 419

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS   +   G  ++  FA  +  G++++  +++     +L F+  ++    
Sbjct: 420 HLTTLISCGALFFLGTGLVKGFAATLGIGVILSLFTALTCTRTLLRFLMSYQGLRR 475


>gi|302550157|ref|ZP_07302499.1| protein-export membrane protein SecD [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467775|gb|EFL30868.1| protein-export membrane protein SecD [Streptomyces
           viridochromogenes DSM 40736]
          Length = 569

 Score =  164 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 102/540 (18%), Positives = 194/540 (35%), Gaps = 35/540 (6%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ 95
             +  LG+DL GG+ + L    +           +      +   +   G+    ++   
Sbjct: 20  HTKPRLGIDLAGGTSITLRAVPEAGNESAINKTNMDTAVSIMERRVNGLGVSESEVQTQG 79

Query: 96  -NKITLSFADSRFKENIADKVTLFLQGVNSKLNVD---------------PKKNLLVTTT 139
            + I ++       E    +V    +     +                          + 
Sbjct: 80  RDNIVVNIPKGTNSEQARKQVGTTAKLYFRPVLATEVSGGNGKTSPSPSPTGSPSGKPSG 139

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
           +       +  +     +    Q   +          S     +  +        G  + 
Sbjct: 140 KATDKPEATDKDSASPSASPTTQGRAVTDALKADATPSAGASDKAKASPSPSASGGTAEE 199

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----RDSDGNQYLVEDKVEISGIHL- 254
              +      A     +        G       L          Q  V    E+ G  + 
Sbjct: 200 DAKKLQAQYAALDCTDEKARGKVGDGSKASEPTLACGKNSQGQWQKYVLGPAEVDGTDVD 259

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL-----DGRVLTAPVIN 309
               +          V + F + GA++F  +T                 DG V++ P + 
Sbjct: 260 KAQASLNTQSGAGWTVQMDFTDSGAKKFAAITGKLAQNQSPQNQFAIVLDGDVVSDPFVR 319

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           QA+  G A+ISGNF  ++A  LA ML+ G+LP+   +     V A LG D +  G  A  
Sbjct: 320 QALTGGNAEISGNFNQQSAQELANMLKYGALPLTFKVDSMTTVTAALGGDQLQAGLIAGA 379

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIAGIVLGIG 425
            GL L+V++++  Y     +A  S+ ++  LT  L++LLG T+     LP++ G ++ IG
Sbjct: 380 IGLALVVIYLMAYYRGLAFIAILSLLVSAALTYTLMALLGPTIGFALNLPAVCGAIVAIG 439

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +  DS I+  ER+R+E R+ +++  +++  + RA  TI  S+  + +A  VLF    G V
Sbjct: 440 ITADSFIVYFERVRDEIREGRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKV 499

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           +GFA T+GL+ L+ +       + ++  + R     +           +     ++  R 
Sbjct: 500 QGFAFTLGLTTLLDVVVVFLFTKPLLTLMARRPFFANGHKWSGLDPKSLGAQPPLRRTRR 559



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/264 (13%), Positives = 90/264 (34%), Gaps = 9/264 (3%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +       G  +   +  +       ++    +  GD+    F   +          G
Sbjct: 273 WTVQMDFTDSGAKKFAAITGKLAQNQSPQNQFAIVLDGDVVSDPFV-RQALTGGNAEISG 331

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
           +   Q+        K   +     + +   V   +  + ++ G++   I    ++IY+  
Sbjct: 332 NFNQQSAQELANMLKYGALPLTFKVDSMTTVTAALGGDQLQAGLIAGAIGLALVVIYLMA 391

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            ++   A  AI +L++    T    AL G       NL AV   +  IG + +  +V ++
Sbjct: 392 YYR-GLAFIAILSLLVSAALTYTLMALLGPTIGFALNLPAVCGAIVAIGITADSFIVYFE 450

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R  ++      + R  ++++        + +   +F++   + +     +  FA  + 
Sbjct: 451 RVRDEIRE---GRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLG 507

Query: 803 FGIVVAASSSIFIAAPILLFIYDW 826
              ++          P+L  +   
Sbjct: 508 LTTLLDVVVVFLFTKPLLTLMARR 531


>gi|257094239|ref|YP_003167880.1| acriflavin resistance protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257046763|gb|ACV35951.1| acriflavin resistance protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 1020

 Score =  164 bits (413), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 81/561 (14%), Positives = 171/561 (30%), Gaps = 38/561 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+L+ M+   G++           + +FP                     L   
Sbjct: 9   RNPIPAVLLFVMLTLFGVMS-----FKAMKIQQFPDVDLPTVT---------VSATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + ++        ++     +T+ F   +  +   D V   +  
Sbjct: 55  APAQMETEVARKIENSVATVQGVKHIYTKVQDGTATVTVEFRLEKPTQEAVDDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D K  ++   +     I+       ++   A   S  +       +       
Sbjct: 115 IRSDLPGDLKDPVISRVSLAGAPILTYTVAASRMDDEA--LSWFVDNTVTKTLLNVRGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++  E DP+RL  L  T A +S                          Q 
Sbjct: 173 AVTRVGGVSREIRIEVDPARLLALRATAADISRQLR-------------------QIQQE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               + ++ G      T        +          G R                     
Sbjct: 214 GSGGRADVGGAEQAVRTIATVRSAEELGAIEIALTDGRRVRLNQLATVTDTVAEQRSAAL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +   PV+   I   +A+ +G   +     LA      +            V   + +   
Sbjct: 274 LNGKPVVGFEIV--RARGAGEVDVADGVRLALATLQTTHSDIDITEAFNFVDPVVENFEG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+++ +   +   V+  ++ L++I T A + LLG TL + ++  + 
Sbjct: 332 SMWLLIEGAVLAVIVVWLFLRDWRATFVSATALPLSMIPTFAAMHLLGFTLNVVTLLSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  ++ + +           +  +    +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIMRHLRMGKTPYQAAMEAADEIGMAVIATTFALIAVFLPTAFMS 451

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G A + F +  G +  I++F ++ + R +   +  Y        +  +R+  I    A  
Sbjct: 452 GVAGKFF-VHFGWTAAIAVFFSLVVARMLTPMMAAYLLRPPRSEHGEARWLEIYTGWAAW 510

Query: 542 FMRARFWGVGISILFSICSIC 562
            +R R   V  ++ F   S  
Sbjct: 511 CLRHRLKTVLATVCFFFGSFA 531



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 80/252 (31%), Gaps = 6/252 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I++ +   R V L+ + +  +++     +             ++ +    V     + 
Sbjct: 241 GAIEIALTDGRRVRLNQLATVTDTVAEQRSAALLNGKPVVGFEIVRARGAGEVDVADGVR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
           +    +        I         +         + +  + +A+++       W     +
Sbjct: 301 LALATLQTTHSDIDITEAFNFVDPVVENFEGSMWLLIEGAVLAVIVVWLFLRDWRATFVS 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L +  T     L G   N+  + ++  ++G  V+D +V  + +   M+      +
Sbjct: 361 ATALPLSMIPTFAAMHLLGFTLNVVTLLSLSLVVGILVDDAIVEIENI---MRHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
                 ++ +E     + T+ A     LP A   G        F    A  +  +   + 
Sbjct: 418 PYQAAMEAADEIGMAVIATTFALIAVFLPTAFMSGVAGKFFVHFGWTAAIAVFFSLVVAR 477

Query: 814 FIAAPILLFIYD 825
            +   +  ++  
Sbjct: 478 MLTPMMAAYLLR 489



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/185 (11%), Positives = 72/185 (38%), Gaps = 6/185 (3%)

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFF 711
             T +   +   EL +   + ++   + + ++ + +   +      +  LIL +       
Sbjct: 832  QTTVGDAEAMGELFQSFGLAMLTGVLCIYIVLVLLLRDFVQPATILAALILSVPGAFLAL 891

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             +     ++ ++  ++ L+G +  + +++ D +   +      +     +  +  +    
Sbjct: 892  FVTQTAVSMPSMIGLIMLMGIATKNSILLIDYV--ILARREHGLDRWSALLDACRKRARP 949

Query: 772  SVYTSMAAFISVLPMAV-WGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             V T++A    +LP+A+  G         AI +  G++ +   S+ +   +  ++ D   
Sbjct: 950  IVMTTVAMGAGMLPIAIGLGTDPSFRAPMAIVVIGGLITSTFLSLLVVPVVFTYVDDAIH 1009

Query: 829  KNARI 833
            +  ++
Sbjct: 1010 QLKKL 1014


>gi|318057099|ref|ZP_07975822.1| preprotein translocase subunit SecD [Streptomyces sp. SA3_actG]
          Length = 569

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 103/518 (19%), Positives = 204/518 (39%), Gaps = 42/518 (8%)

Query: 45  SLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-I 98
            LG+DL GG+ + L+   +           +    D +   +   G+    ++   N  I
Sbjct: 16  RLGIDLAGGTSITLKAQNEPGQKNAVNKTNMDTAVDIINRRVNGLGVSEAEVQTQGNDHI 75

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL--------------------VTT 138
            ++      ++   ++V    Q     +                              + 
Sbjct: 76  VVNIPRGTNEKQAREQVGTTAQLYFRPVLQVAAGTPAADPSASPSPSASSSPSGKTSPSP 135

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
                +   + +      + A         + + Q   +++T                  
Sbjct: 136 KSSAGAGGSTASPGAGSSASAGAGDASPQGRAVPQALKADATPSANAKSDKDADAKASPS 195

Query: 199 PSRLRQLLGTTAKMSFHK--------VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           P         T  +            V      K     V    +       +    E+ 
Sbjct: 196 PDASAAPDDKTTALFGSLDCSNKAQRVKATTGVKPTASMVACGNEGGQWAKYLLGPAEVE 255

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
           G +++ A A  D + ++ +V + F+  G ++F  +T     +   +     VL   V++ 
Sbjct: 256 GKNVSKADAVLDTQRNQWIVQMKFNGEGKKKFSSITGKLAQQQSPMNQFAIVLDGDVVSA 315

Query: 311 AIPSGK----AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              S +    A+ISG+F+ E+A  LA +L  G+LP+  +      V A LG + ++ G  
Sbjct: 316 PSVSERLGGSAEISGSFSQESAKDLANVLSYGALPLTFHEETVTTVTAALGGEQLHAGLI 375

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVL 422
           A   GL L++++++  Y    L+A  S+ ++ ILT  +++LLG      L LP++ G ++
Sbjct: 376 AGAVGLALVIIYLVAYYRGLALIAIASLVVSGILTYTIMTLLGPGIGFALNLPAVCGAIV 435

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+  DS I+  ER+R+E R+ +++  +++ G+ RA  TI  S+  + +A  VLF    
Sbjct: 436 AIGITADSFIVFFERVRDEVREGRTLRPAVERGWPRARRTILVSDFVSFLAAAVLFVVTV 495

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G V+GFA T+GL+ L+ + T     + ++  + R K  
Sbjct: 496 GKVQGFAFTLGLTTLLDVVTVFLFTKPLLTLLARRKFF 533



 Score =  110 bits (275), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 89/267 (33%), Gaps = 10/267 (3%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
               +    + +G  +   +  +        +    +  GD+       E+         
Sbjct: 271 NQWIVQMKFNGEGKKKFSSITGKLAQQQSPMNQFAIVLDGDVVSAPSVSERLGGSAEISG 330

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                +   +  ++      +      +    V   +  E +  G++   +    ++IY+
Sbjct: 331 SFSQESAKDLANVLSYGALPL--TFHEETVTTVTAALGGEQLHAGLIAGAVGLALVIIYL 388

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVV 740
              ++   AL AI +L++    T     L G       NL AV   +  IG + +  +V 
Sbjct: 389 VAYYR-GLALIAIASLVVSGILTYTIMTLLGPGIGFALNLPAVCGAIVAIGITADSFIVF 447

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++R+R  ++      + R  +++         + +   +F++   + V     +  FA  
Sbjct: 448 FERVRDEVRE---GRTLRPAVERGWPRARRTILVSDFVSFLAAAVLFVVTVGKVQGFAFT 504

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWR 827
           +    ++   +      P+L  +   +
Sbjct: 505 LGLTTLLDVVTVFLFTKPLLTLLARRK 531


>gi|218439697|ref|YP_002378026.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 7424]
 gi|218172425|gb|ACK71158.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 7424]
          Length = 1096

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 71/595 (11%), Positives = 161/595 (27%), Gaps = 44/595 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G +           LD+ P   PK              +V+  +
Sbjct: 9   KRPVLTTVCSIVIVLVGTICMAV-----LPLDKLPQIAPK-------------QIVVSAN 50

Query: 62  EDDFVNGF-LQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   +        +   +     + I++SF            V 
Sbjct: 51  YVGADAKTTVDNVTTPIERQINGVDYMRWMTSNTDNNGNSSISVSFPVEIDPNTAQVLVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI-----EQSMEIIRQRI 171
             +   N  L        + T  +     ++     +              +  + R   
Sbjct: 111 NRVAQSNQFLPQSVIATGVNTRKQSPSITLVYAFYSETGADGKPIYPISFVNNYVDRYIW 170

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           + +   E           +  +    DP +L       + +       N        G +
Sbjct: 171 NDLRRIEGVGDLALFGSDIYAMRIWVDPDKLAARQLAASDVVRAIQQQNFEVGAGSVGAQ 230

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                   Q  +  K  +                    + +   + G     +       
Sbjct: 231 PAPPEQQFQIPLRVKGRV------------LSPEEAENIVVKVGDNGTLIRVKDIGRAEL 278

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
              +      +         +       +   T        A L A   P    ++   N
Sbjct: 279 GSQSYSTLAYLDGDNPAVALVVYQLPGSNALDTATNIKAKMAELEASFPPGIKYVITLDN 338

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 +      T      LV++++F+ +   +  L+   +I + +I ++  L  LG T
Sbjct: 339 TLFINAALKDLSVTLLQAVALVVLIIFIFLQDWRTTLIPAIAIPVALIGSMIGLQALGFT 398

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L   ++   VL  GL VD  I++ E +  +  +      +        +     + +  L
Sbjct: 399 LNQLTLFACVLATGLVVDDGIVIVEAVSTKLSQGMRPVQAALDSMEELFGATIATTLVLL 458

Query: 472 IATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP- 527
              + + FF G      R FA+ +  +I+ S F A++    M   ++R  +     ++  
Sbjct: 459 AVFIPVSFFPGSTGIVYRQFALVIVFAIIFSTFNALTFSPTMSGVMLRPPQPPHGPLSWV 518

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              F  +   I   + R       I ++     I  +      Y    +  I   
Sbjct: 519 FREFNRLFGWIQGGYRRLIELLTHIKLVIVALFIGGILLTAWMYQTLPQSFIPAE 573



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/197 (11%), Positives = 70/197 (35%), Gaps = 9/197 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +      +  ++      +      +  +      ++L    +  V +  + + I++ 
Sbjct: 310 DTATNIKAKMAELEASFPPGIKYVITLDNTLFINAALKDLSVTLLQAVALVVLIIFIFLQ 369

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L     + + +  ++      G   N   + A +   G  V+D +V+ + + 
Sbjct: 370 ---DWRTTLIPAIAIPVALIGSMIGLQALGFTLNQLTLFACVLATGLVVDDGIVIVEAV- 425

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
                 +  +        S+ E  G ++ T++      +P++ + GS       FA+ + 
Sbjct: 426 --STKLSQGMRPVQAALDSMEELFGATIATTLVLLAVFIPVSFFPGSTGIVYRQFALVIV 483

Query: 803 FGIVVAASSSIFIAAPI 819
           F I+ +  +++  +  +
Sbjct: 484 FAIIFSTFNALTFSPTM 500


>gi|317508684|ref|ZP_07966339.1| protein-export membrane protein SecF [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253005|gb|EFV12420.1| protein-export membrane protein SecF [Segniliparus rugosus ATCC
           BAA-974]
          Length = 371

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 135/319 (42%), Gaps = 12/319 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
            P     L     A + +  R     I+    +  +      G  +GI+F GG  +   A
Sbjct: 37  RPSLFTRLYTGTGAFEIVGRRKLLSLITAGILLVCVASFVFRGFTFGIEFVGGTSISFPA 96

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKK 640
               D   +   +      +       G  +           + AQ       + E    
Sbjct: 97  EGTTDNGKIAKVIAETTGHEPVSVQTVGTGSSATVQIRTGDLNNAQTVKVTDALFEAFHP 156

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K  +  P     N   V      E+  + ++ + +  +A+  YI IRF+   A+ A+ +L
Sbjct: 157 KGHDGKPSKAAVNVSSVSSSWGGEITNRALIALGVFLLAVGAYIAIRFELDMAIAALISL 216

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN--MKLYTTSISFR 758
           + D+  T G ++L G E     V  +LT++G+S+ D VVV+D++ +N      TT  ++ 
Sbjct: 217 LFDLVVTAGVYSLVGFEVVPATVIGLLTILGFSLYDTVVVFDKVAENVRGVTRTTRRTYA 276

Query: 759 DLIDKSINETLGRSVYTSMA-----AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
           +L + ++N+T+ RS+ T++        + V+ + + G   +   A+    G++  A SSI
Sbjct: 277 ELANLAMNQTMMRSINTTVIGVLPVLGLVVVAVLLLGVGTLKDLALVQLVGLISGAYSSI 336

Query: 814 FIAAPILLFIYDWRAKNAR 832
           F+A P+L+ + + + +  R
Sbjct: 337 FVATPLLVTLKERKQEIKR 355


>gi|313837770|gb|EFS75484.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL037PA2]
 gi|314927348|gb|EFS91179.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL044PA1]
 gi|314972707|gb|EFT16804.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL037PA3]
          Length = 549

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 119/538 (22%), Positives = 211/538 (39%), Gaps = 54/538 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +LV++  M   +G++                +  P     LGLDLRGG+ + L    +D
Sbjct: 2   IFLVVIIVMYVLMGVM---------------RTWSP----KLGLDLRGGTSVTLTAKTED 42

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTL 117
                   L+     ++  +   G+G  S+R + ++ I +S  +       E +     L
Sbjct: 43  GKAPSATSLEQARLIIQQRVNALGVGESSVRTMGDRNIVVSAPNVESSKLVEMVGQTAQL 102

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             + V ++  V  K           +               +     +  +    +    
Sbjct: 103 GFRMVYAEEPVKQKSPTPEPAKPSTLPTADPNAKASAAPEASASPKNDA-KPSAPKYNEK 161

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +               P  +D                       S            D +
Sbjct: 162 DPQSAAKMVKAAQEWKPTPEDQGAFDNY------------KCAKSVDSPGDKPLVTCDRE 209

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G    +   V I+G  +  A +         VV++ F+ +G   F + T     K     
Sbjct: 210 GTTKYLLSPVAITGTQVASADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSPQN 269

Query: 298 LDGRVLTAPVINQAIP-----------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
               VL   VI+                G+A+ISG+FT ++A  LA +L+ G+LP+  +I
Sbjct: 270 QFAVVLDGKVISSPQLDGSKGASCPISGGQAEISGHFTQDSAADLANVLKYGALPLSFDI 329

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
               N+   LG + +  G  A V GL+L+  + ++ Y   GLVA  S+ +  I T A + 
Sbjct: 330 SSVDNISPTLGGEQLRAGMIAGVIGLILVGAYCLLYYRGLGLVAISSLIVAGITTYAAMV 389

Query: 407 LL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
           LL    G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+S+A  T
Sbjct: 390 LLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWSKARGT 449

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           I  ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 450 ILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLVICFFFTHPVVTLLGRTRFW 507



 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 74/184 (40%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R G++  +I  I +  Y  + ++    L AI++LI+    T
Sbjct: 326 SFDISSVDNISPTLGGEQLRAGMIAGVIGLILVGAYCLLYYR-GLGLVAISSLIVAGITT 384

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 385 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIRE---GRTLRTALQT 441

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             ++  G  +     + +S + + V     +  FA  +    V+      F   P++  +
Sbjct: 442 GWSKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLVICFFFTHPVVTLL 501

Query: 824 YDWR 827
              R
Sbjct: 502 GRTR 505


>gi|91977796|ref|YP_570455.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB5]
 gi|91684252|gb|ABE40554.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB5]
          Length = 1042

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 82/695 (11%), Positives = 188/695 (27%), Gaps = 59/695 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   +   I   G +  +        + ++P   P               + +  + 
Sbjct: 8   RPIFAWAISLFIMLAGGISLV-----SLPISQYPDVAP-------------VTVSITANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
                  L    +  +   L    G+  F          +IT+SF            V  
Sbjct: 50  PGATPERLYDGVTRIIEEELNGIPGMMYFESTNDAGGAAQITVSFGPGYDPSKATIAVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ + ++L     +  ++        ++    +     +  IE      R+   ++   
Sbjct: 110 RIKRIEARLPRAVVQQGVLVEEASTAFLMFVTLSATGAGTTEIELGDIAARRVTGELRRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L  L  T   ++      N      M G +  +   
Sbjct: 170 PGVGRATLYSS-EKAMRIWIDPDKLIGLNLTAGDVTSAVEGQNAQIASGMIGAQPAKKGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  K +++                +    +                 +       
Sbjct: 229 RIAANVLVKGQLT-------------TVKEFEEIVLRANPDGSIVRLRDVAEVELGGQSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L                     +   T        A L+  +L      V          
Sbjct: 276 LQQTRQDGKPSAGIGIQLAPGANALATATGVRAKIAELQK-TLTNVKLQVPYDTTPFVQV 334

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+F+ +   ++ ++    + + ++ T A++ +LG ++ + ++
Sbjct: 335 SIKQVLMTLLEAMVLVFAVMFLFLQNIRYTIIPTIVVPIALLGTCAVMLMLGFSINVLTM 394

Query: 418 AGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    +        +     S+    +    +  +   V 
Sbjct: 395 FGMVLAIGILVDDAIVVVENVERIMKDEGLPPREATFKAMSQISGAVVGITVVLISVFVP 454

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           L FF G      R F++ M  SI  S F A+S+  A+   +           +       
Sbjct: 455 LAFFPGSVGVIYRQFSVAMATSIAFSAFLALSLTPALCATLLKPVDKAHGHSQRGFFGLF 514

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +    +        ++    R     +  S+L +                + +G + + V
Sbjct: 515 NRFFDATSRRYVGGVSSVVRRPVRSLLVYSVLIAAMVFGFNRLPSGFLPGEDQGYLIVDV 574

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                           +L I      +F  E+               Q +   +    + 
Sbjct: 575 QTPPESSTER------TLDIIKQIEAHFSSERAVDSYTTVGGYGFSGQGQNTAIAFINLK 628

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +        + + +G   +   +      + IS  
Sbjct: 629 DWSERGANDSAQSIG-DRANAFLSTLPDAIAISLA 662



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 95/254 (37%), Gaps = 8/254 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             ++ + AN    +  +R   E    G    Q    +      +  Q             
Sbjct: 246 FEEIVLRANPDGSIVRLRDVAEVELGGQSYLQQTRQDGKPSAGIGIQLAPGANALATATG 305

Query: 638 VKKKITEIVPLSTIQNTEIVGPK--ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694
           V+ KI E+    T    ++        +  I++ ++ ++ + + +   +++  +   + +
Sbjct: 306 VRAKIAELQKTLTNVKLQVPYDTTPFVQVSIKQVLMTLLEAMVLVFAVMFLFLQNIRYTI 365

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                + + +  T     + G   N+  +  ++  IG  V+D +VV + +     +    
Sbjct: 366 IPTIVVPIALLGTCAVMLMLGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMKDEG 423

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASS 811
           +  R+   K++++  G  V  ++      +P+A + GSV      F++ MA  I  +A  
Sbjct: 424 LPPREATFKAMSQISGAVVGITVVLISVFVPLAFFPGSVGVIYRQFSVAMATSIAFSAFL 483

Query: 812 SIFIAAPILLFIYD 825
           ++ +   +   +  
Sbjct: 484 ALSLTPALCATLLK 497



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/287 (11%), Positives = 94/287 (32%), Gaps = 11/287 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                    +     ++     N  +  +  +QL V  ++   + +         +G    
Sbjct: 751  TYVNDFPNNARMQRVIVQADANRRMTAEDILQLSVRNSKNQMVPLQSVAQVKWSMGPSQV 810

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
              F+G  +        PG +                           +           +
Sbjct: 811  VGFNGFPSIKFSGSAAPGYASGDAMAEMERLAAELPSGFDYAWSGQSLQEKLSGS----Q 866

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             I  +++S + + + +   ++ W      +  +   +  ++    L  +  ++     ++
Sbjct: 867  AIYLLVLSLLCVFLCLAALYESWSIPFAVLLVVPTGVIGSVFAMLLRDMPNDIYFKVGLI 926

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            T+IG S  + +++ +  +    L    ++F +   ++        + TS+A  + VLP+A
Sbjct: 927  TVIGLSAKNAILIIEIAKD---LVAQGVAFGEAAIEACRRRFRPILMTSLAFILGVLPLA 983

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    G +   +    +  G++ A + +IF    + + I     K  
Sbjct: 984  IATGAGSNSQRAIGTGVFGGMLTATALAIFFTPVLYVLITSTFGKRK 1030


>gi|300697833|ref|YP_003748494.1| multidrug efflux system, subunit C [Ralstonia solanacearum
           CFBP2957]
 gi|299074557|emb|CBJ54108.1| multidrug efflux system, subunit C [Ralstonia solanacearum
           CFBP2957]
          Length = 1033

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 69/608 (11%), Positives = 165/608 (27%), Gaps = 45/608 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+            +   P                  +  L    
Sbjct: 10  RPVATALLTIGVALAGIAA-----FNLLPVSPLPQVDFPTI---------SVNASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               ++TL F  SR  +  A  V   +   
Sbjct: 56  PETMAATVATPLERSLGRIAGITEMTSQSSLGSTRVTLQFDLSRDIDGAARDVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L      N          + ++    +        E           ++       Q
Sbjct: 116 RSLLPSGLPSNPTYRKVNPADAPIMI-LGLTSDTKSRGELYDAASTILAQKLSQISGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P+ L +   +T  +       N +K   M               
Sbjct: 175 VNIGGASLPAVRVELNPTALNKYAISTETVRTVITATNANKPKGMLEA------------ 222

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G  +    AN   +  +    +                 +   +  + +   
Sbjct: 223 --------GDRVWSIYANDQARKAEEYKPLIIAYRNGAPVRLSDVAEVTDSVQDIRNYGS 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I + +   +   T++    +   LR          V          S    
Sbjct: 275 ANGKPSVLLIINRQPGANIIDTVDRINAILPYLRNTIPAQINLDVMMDRTPTIRASLRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV++V+++ +   +  L+   ++ +++I T  ++ L G +L   S+  + +
Sbjct: 335 ERTLMLSIGLVIMVVYLFLRNLRATLIPSVAVPVSLIGTFGVMYLCGYSLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +            +   G      T+   + + +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENVSRHIENGMRPMQAALKGAREVGFTVVSMSFSLIAVFIPLLMMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFF 532
             G   R FA+T+ ++IL+S+  +++    M   +             +  +        
Sbjct: 455 IVGRLFREFAVTLSVAILVSLVISLTTTPMMCARLLKPASEEEPGWFHRKTERFFTLLLD 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +A     +    + +     +     +      +     G +   + A++ +   
Sbjct: 515 GYRHSLAWALRHSWLTLLILLATVCLNVYLYIVVPKGFFPQQDVGRLMGFIQADQSISFQ 574

Query: 593 VVRSNLES 600
            +R+ L  
Sbjct: 575 AMRTKLVD 582



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 88/245 (35%), Gaps = 10/245 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV LS V    +S+Q               L+  +    + +     +  +  
Sbjct: 246 IAYRNGAPVRLSDVAEVTDSVQDIRNYGSANGKPSVLLIINRQPGANIIDTVDRINAILP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK--GIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            +   +P     +  +      R  +R     + + I  + M++Y+++R      L    
Sbjct: 306 YLRNTIPAQINLDVMMDRTPTIRASLRDVERTLMLSIGLVIMVVYLFLR-NLRATLIPSV 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T G   L G   +  ++ A+    G+ V+D +VV + +    +     +   
Sbjct: 365 AVPVSLIGTFGVMYLCGYSLDNLSLMALTVATGFVVDDAIVVLENV---SRHIENGMRPM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
               K   E     V  S +     +P+ + GG V      FA+ ++  I+V+   S+  
Sbjct: 422 QAALKGAREVGFTVVSMSFSLIAVFIPLLMMGGIVGRLFREFAVTLSVAILVSLVISL-T 480

Query: 816 AAPIL 820
             P++
Sbjct: 481 TTPMM 485



 Score = 44.3 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 89/259 (34%), Gaps = 6/259 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                             +         V  S        +         +     L +  
Sbjct: 750  VMEAAPQYWQNPAGLQDIYLITSSGAQVPLSTFSHYGPSNTPLAVNHQGQFAASTLSFNL 809

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                + +   + ++  +  I   +T+  +     +  ++ +    V ++ + I + I + 
Sbjct: 810  APGASLSTATQQIQDAMNRIGVPTTVHGSFQGTARAFQDSLSSQPVLILFALITIYIVLG 869

Query: 686  IRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++ Y   +  ++TL       L    L   +F++ A+  V+ LIG    + +++ D  
Sbjct: 870  VLYESYMHPITILSTLPSAGVGALLALILTDTDFSIIALIGVILLIGIVKKNAIMMIDFA 929

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +     +  +S  D I  +        + T+MAA +  LP+A+    G  +     I +
Sbjct: 930  LE--AERSQGMSPADAIFHACVLRFRPILMTTMAALLGALPLALGHGDGAELRQPLGISI 987

Query: 802  AFGIVVAASSSIFIAAPIL 820
              G++V+   +++    + 
Sbjct: 988  VGGLLVSQILTLYTTPVVY 1006


>gi|227833238|ref|YP_002834945.1| protein-export membrane protein SecF [Corynebacterium aurimucosum
           ATCC 700975]
 gi|262184224|ref|ZP_06043645.1| preprotein translocase subunit SecF [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454254|gb|ACP33007.1| protein-export membrane protein SecF [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 387

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 130/319 (40%), Gaps = 11/319 (3%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                   L  D     F+        I+ +  I SI  +   G N  +DF+GG +L + 
Sbjct: 8   RKISRFDRLYVDGSGFDFVGRAKTWYTIAGVLLIASILAIVLRGFNLSLDFEGGTKLNMP 67

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A       V  +  E+  +     Q      +  + +  +        +  + + +    
Sbjct: 68  AGDLSTEQVEETFTEATGVTPELVQIVGAGSSETLEITSERLSQDEVNQARQAIFETYQV 127

Query: 645 IV----PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                 P      +  V       + ++ +V + +  +   IY+ +R +   A  AI  L
Sbjct: 128 KDDNGKPSPDAIGSSTVSESWGSSITQRMVVAMAVFLVLATIYVAVRLQRDMAFAAILAL 187

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFR 758
           I D     G +ALFG E +   +  +LT++ +S+ D V+V+D++ +N          ++ 
Sbjct: 188 IFDGVFIAGIYALFGFEVSPAVIIGLLTVLTFSLYDSVIVFDKVDENTTGLEGQRKKTYA 247

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSI 813
           +L + ++N+T+ RS+ TS+ + + ++ + +      G   +   A+    G++    SSI
Sbjct: 248 ELTNLAVNQTVMRSISTSVISALPIIALFIVAVWLMGIGTLRDLALVQFIGVIEGVFSSI 307

Query: 814 FIAAPILLFIYDWRAKNAR 832
           F+A  +L+ + + R    +
Sbjct: 308 FLATTLLVTLSNQRKSVKK 326


>gi|167587591|ref|ZP_02379979.1| acriflavin resistance protein [Burkholderia ubonensis Bu]
          Length = 932

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 71/583 (12%), Positives = 157/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+ +                  L    
Sbjct: 10  RPIATTLLALGVALAGLFAFIKLPVSPLPQVDFPTIL--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    S   +            +   +   Q
Sbjct: 116 RADLPAALKSNPTYRKVNPADSPIMV-VSLTSETSSPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSVSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                 +   +  + +  +
Sbjct: 217 --KGAIEFGPQRYQLYTNDQASRASQYRDLVVAYRNGSAVRLADLSEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 ANGKRAVLVILYRSPGANIIETIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLRDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+F+ +   +  L+   ++ ++++ T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVGLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGTPRLQAAFDGAREVGFTVLSMSLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++     K  +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLPDAHDKRDEGRFARFLERGFARMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   ++        +  +   Y +  KG     
Sbjct: 515 RGYERSLSWALRHPLMILAILFATIGLNVYLYIVVPKGFFPQQ 557



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +  + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAVGLVVMVVFLFLR-NWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---SRHIENGTPRLQAAFDGAREVGFTVLSMSLSLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+ + S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLAVSLTVTP 483


>gi|119898625|ref|YP_933838.1| RND efflux transporter permease [Azoarcus sp. BH72]
 gi|119671038|emb|CAL94951.1| RND efflux transporter, permease protein [Azoarcus sp. BH72]
          Length = 1034

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 63/557 (11%), Positives = 148/557 (26%), Gaps = 38/557 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           +   P                    +     
Sbjct: 10  RPVATSLLMLAILLAGLI-----GYRLLPVAALPEVEYPTIQ---------VSTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +     + ITL FA     +    +V   +   
Sbjct: 56  PEVVASSITAPLERQLGQIAGLKQMSSTSSGGASVITLQFALGLSMDVSQQEVLAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     + +      + +++   I        + +  +  +   +I        
Sbjct: 116 SALLPGDLPMPPVFSKVNPADAPIVT-LAISSDTLSLPQVADLVDTRLAQKISRIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  + +P  L         +       N +     F       +      
Sbjct: 175 VSIGGGQRPAVRIQVNPQALAAQGLNLEDIRTAIGEANVNIAKGSFDGPLRASTLDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                            +                 +            
Sbjct: 235 LRSA--------------------DEYRRLIIAWKNGAPIRLGDIAELVDGAENTRLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T++    L   L+A         +          S    
Sbjct: 275 ADTRPAVILNIQRQPGANVIDTVDRIKALLPTLQASLPATVDLRLLSDRTTTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   LV++V+F+ +       +   ++ L+++ T A++ L G ++   ++  + +
Sbjct: 335 GHELLLAIALVVMVIFIFLRNLPATFIPSVAVPLSLVGTFAVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +S   +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIVRHLEEGESPLEAALKGAQQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++ +   ++           I  CIA
Sbjct: 455 VVGRLFREFAITLAVAILISAVVSLTLTPMMCARLLHHAPEENHGAFFRLTGAFIDRCIA 514

Query: 540 IQFMRARFWGVGISILF 556
              +  R+      +  
Sbjct: 515 RYAVALRWVLARQGLTL 531



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+I+I++R            + L +  T     L G   N   + A+    G+
Sbjct: 340 LAIALVVMVIFIFLR-NLPATFIPSVAVPLSLVGTFAVMYLAGFSINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +   ++      S  +   K   +     +  + +    ++P+   G  
Sbjct: 399 VVDDAIVMIENI---VRHLEEGESPLEAALKGAQQIGFTIISLTFSLIAVLIPLLFMGDV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FAI +A  I+++A  S+ +  
Sbjct: 456 VGRLFREFAITLAVAILISAVVSLTLTP 483


>gi|42522459|ref|NP_967839.1| acriflavin resistance protein [Bdellovibrio bacteriovorus HD100]
 gi|39574991|emb|CAE78832.1| acriflavin resistance protein [Bdellovibrio bacteriovorus HD100]
          Length = 1032

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 59/605 (9%), Positives = 162/605 (26%), Gaps = 40/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L   +   G +  +   + +     FP                   +  E  
Sbjct: 9   RRPVFAWMLMFGLIVFGAISFMRMGVSELPDVDFPVIS--------------ISVRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++    ++         R   + IT+ F   R  +     V   +  
Sbjct: 55  APEVMEADVIDPIEDALISIQGVKNISSVARNSTSDITVEFDLERDIDVAFQDVQAKMSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     ++    ++  I+    + +++     E  + +     D++       
Sbjct: 115 IQDALPQNMDSPTVMKINPEDFPIMWLSLSSNKMPLE--EMMVFVKDYVRDRLTTVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   +        L +   +   ++      +               S     
Sbjct: 173 NLWMPGYLEPNMRVWVRNEDLNRYALSVIDVTNTLRTEHAEPPAGRAEYNKTEYSLRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +                   + +K +V+                    + +  V+   
Sbjct: 233 EAKT----------------IEQFNKILVNSRGGGPNYMPIPLEKVVEFKEGMVDVVQFA 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +            A ++         +V          S   
Sbjct: 277 RANGKAAVGLGVVKQRGSNAVTVAHAVKGRIAEIQKTLPEGMQIVVNYDGTKFVEESVHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  + A L  +V ++ +           +I  +V+ +  +L   G TL + ++ G+ 
Sbjct: 337 LVLTLILAAILTSLVCWLFLGSWSSTFNVLLAIPTSVLGSFIILYFAGFTLNIFTLMGLS 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E I       ++   +  +G          ++++ +   + + F  
Sbjct: 397 LAIGIVVDDAIMVLENIIRHLEMGKTKREAALVGAREITFAAMAASVSLVAIFLPIAFME 456

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G   R    F +TM  +++IS+  A+++                +  +  +         
Sbjct: 457 GLIGRFLFQFGVTMSAAVMISLLEALTLTPMRASQFVDTGERTTRIGRGFEHLFDRLKNA 516

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               + I         +     F +    ++F  G       +  + + +       +S 
Sbjct: 517 YTRSLEISLNHRWKVILASLFFFVLSFGSVVFLKGEFQPAQDQSSLMIQISNPPKSAISF 576

Query: 594 VRSNL 598
               +
Sbjct: 577 TDEKV 581



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 71/219 (32%), Gaps = 6/219 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                  + Y         +      +++   V  +  +       +  ++     I  ++
Sbjct: 812  NRQRSIIIYGNIGPGLSQQQSVDKAQEVARKVLPAEYKVLLSGSAEEFQQSFMSLIFALV 871

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +  I   + +  +F  +   +     L    +       + G   N+ ++  ++ L+G  
Sbjct: 872  LGFIVAYMILASQFNSFIDPVTVFMALPFSFSGAFLALLIGGQSLNIFSMIGLILLMGIV 931

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ D    N +     I     + ++    L   + TS A     +P A+    G
Sbjct: 932  KKNSILLVD--FTNQRRDAEKIHVHQALIEACPTRLRPILMTSFATIAGAVPAAMSLGPG 989

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                   AI +  G+ V+   ++++   +      +  +
Sbjct: 990  AEARQPMAIAVIGGVFVSTFLTLYVVPCVYSLFARFDRR 1028



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 86/234 (36%), Gaps = 7/234 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P+ L  V    E +       +        L  ++ +  ++V     ++    +I + +P
Sbjct: 256 PIPLEKVVEFKEGMVDVVQFARANGKAAVGLGVVKQRGSNAVTVAHAVKGRIAEIQKTLP 315

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                     G K   E + + ++ +I++AI   +  W+    W      +  +   +  
Sbjct: 316 EGMQIVVNYDGTKFVEESVHELVLTLILAAILTSLVCWLFLGSWSSTFNVLLAIPTSVLG 375

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           +       G   N+  +  +   IG  V+D ++V + +   ++      + R+       
Sbjct: 376 SFIILYFAGFTLNIFTLMGLSLAIGIVVDDAIMVLENI---IRHLEMGKTKREAALVGAR 432

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           E    ++  S++     LP+A   G +   +  F + M+  ++++   ++ +  
Sbjct: 433 EITFAAMAASVSLVAIFLPIAFMEGLIGRFLFQFGVTMSAAVMISLLEALTLTP 486


>gi|146279787|ref|YP_001169945.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17025]
 gi|145558028|gb|ABP72640.1| response regulator receiver protein [Rhodobacter sphaeroides ATCC
           17025]
          Length = 1041

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 76/642 (11%), Positives = 175/642 (27%), Gaps = 40/642 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V++   I   GL+       PQ  + RFP   P +                   +
Sbjct: 8   RPIFAVVIAIFIALAGLVAI-----PQLPVARFPDIAPPSI---------SIFATYAGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  S ++       ++       + + F      E     V   L+ 
Sbjct: 54  AQTVADSVVRPIEKEVSSVRNVLYVESTVDATGGANVLVVFKPGTDPEMAQVDVQNRLKN 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    ++  +     +   ++          +  +     + R   +++       
Sbjct: 114 AEALLPEPVRRAGIGVEAAESGFLMFITLKSRGGATDELSLGEYLTRSLSEELKRIPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP++L     T A ++      N        G            
Sbjct: 174 RVQPFGS-DRAMRVWVDPAKLAAYGLTMADVTEAITRDNAPTTPGRVGDEPTVPGTRLST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++                         E    R        +      +    
Sbjct: 233 PLILRGQLT-------------TPEAFAAIPLRAEADGSRLVLGDVARVVSGAQTLAFSV 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +   T        A LR          +          S + 
Sbjct: 280 SSNGQPAAAAAIQMSPGANAVRTAAAIEARLAELRPALPGDMELTISYNTAPFVKVSIAK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+ + +   +  L+      + ++ T A+++L G ++ + ++ G+V
Sbjct: 340 VISTLIEAMVLVFLVMLLFLQNLRCTLIPTLVAPIALLGTFAVMALAGYSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +     R+  S   +           I    +      + +   
Sbjct: 400 LAIGIIVDDAIVVVENVERIMTRQGLSARAATRQAMQEISGPIVGITLVLAAVFIPMGLA 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530
           GG      R F ++M +SIL+S F A+++  A+   +                +    + 
Sbjct: 460 GGSVGAIYRQFTLSMAVSILLSAFLALTLTPALCATLLRPGTGHATRGFFGGFNRRFEAL 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  +     R     V  + L ++ ++            + +G     +       
Sbjct: 520 SARYTGWVGWGLRRGGRMLVFYAALLTVLAVGYQRLPTAFVPEEDQGNFMAAIELPAGAT 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               R+ + + +    +  +       L       G + AQ 
Sbjct: 580 AERTRAIVAAYEAYTATRPDIVENTVILGFGFSGSGPNAAQA 621



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/143 (21%), Positives = 58/143 (40%), Gaps = 9/143 (6%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +R      L A   L      T    AL G   N+  +  ++  IG  V+D +VV + + 
Sbjct: 362 LRCTLIPTLVAPIAL----LGTFAVMALAGYSINVLTMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +S R    +++ E  G  V  ++      +PM + GGSV      F + MA
Sbjct: 417 -ERIMTRQGLSARAATRQAMQEISGPIVGITLVLAAVFIPMGLAGGSVGAIYRQFTLSMA 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I+++A  ++ +   +   +  
Sbjct: 476 VSILLSAFLALTLTPALCATLLR 498



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 69/166 (41%), Gaps = 9/166 (5%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAA 725
            +  + +  S + + + +   ++  +++     L++ +       A+   G E ++     
Sbjct: 862  QAPMLLAASMLVVFLVLAALYE-SWSIPLAVLLVVPLGVLGAVLAVLARGGENDVFFKVG 920

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++T+IG S  + +++ +  R    L +  +     I ++    L   + TS+A  + V+P
Sbjct: 921  LVTIIGLSAKNAILMIEFAR---HLRSQGVGPHRAILRAARLRLRPILMTSLAFILGVVP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +    G  +  +    +  G+V A   +IF    + + +  +  
Sbjct: 978  LMLARGAGSEIQNAIGTGVFGGMVSATVLAIFFIPVLYVTVSRFGR 1023


>gi|301058180|ref|ZP_07199231.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [delta proteobacterium NaphS2]
 gi|300447719|gb|EFK11433.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [delta proteobacterium NaphS2]
          Length = 1058

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 73/589 (12%), Positives = 165/589 (28%), Gaps = 39/589 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +   +G++     FL    ++++P+  P               + +   
Sbjct: 16  RRPIVAMVIAIVTVIVGVV-----FLKSLPVEQYPNITPPI-------------VEVRAT 57

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++      L   +     +         +    I  SF      +       
Sbjct: 58  YTGADAISVEQSVATPLEQQINGVDNMIYMKSTNANDGTMTIQTSFDIGTDPDMNTVFTQ 117

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    +KL  + K+  + T       ++L          +        +    D +  
Sbjct: 118 NRVAAATAKLPEEVKRFGVTTEKSLPNILMLIAITSKDGRYNQHWLGNYALINIKDILAR 177

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +     P RL Q+  T  ++       +    G  FG       
Sbjct: 178 IKGIGRVNVIGASDYSMRIWIKPDRLAQMGITVPEIMDALRAQSVIVPGGKFGAEPAPPG 237

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y V     +                 +    +        +        +   +  
Sbjct: 238 TEFTYTVRLPERLQSEE-------------QFGEVVIRTTDEGAQVKIKHVARVELGVET 284

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +     +        L           +      A  
Sbjct: 285 YNAFTRLNDSACAMIGVYQAPGSNAVDLAQKVRQTMESLSGSFPESLRYDISLDTTLAIT 344

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                   T  I   LV++V+F+ +   +  L+   +I +++I    +  L+G T+ + S
Sbjct: 345 AGIDEIIETLYIALALVILVVFIFIQDWRAALIPTIAIPVSLIGAFIVFPLIGFTINVLS 404

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E ++           +         + +  + +  +   + 
Sbjct: 405 LLGLVLAIGIVVDDAIVVVEAVQNNIENGLDPKSATMKAMEEVTAPVIATTLVLVAVFIP 464

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +   G   G   + FAIT+ +S++ S   A+++  A+   ++R +K     +    R F 
Sbjct: 465 VAIMGGITGSLYQQFAITVAVSVVFSSINALTLSPALCALLLRKQKPMRGPLGAFFRVFN 524

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                +          V   I   +  I +L    +  G    GG    
Sbjct: 525 KVFEKSTNGYVGLTKFVARRISIGVIFILILTGALVYVGGLIPGGFMPE 573



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 84/200 (42%), Gaps = 9/200 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           + +E +     E +      +T +       E+I    + + +  + + I+I     W  
Sbjct: 318 QTMESLSGSFPESLRYDISLDTTLAITAGIDEIIETLYIALALVILVVFIFIQ---DWRA 374

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           AL     + + +      F L G   N+ ++  ++  IG  V+D +VV + ++ N+    
Sbjct: 375 ALIPTIAIPVSLIGAFIVFPLIGFTINVLSLLGLVLAIGIVVDDAIVVVEAVQNNI---E 431

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             +  +    K++ E     + T++      +P+A+ G   GS+   FAI +A  +V ++
Sbjct: 432 NGLDPKSATMKAMEEVTAPVIATTLVLVAVFIPVAIMGGITGSLYQQFAITVAVSVVFSS 491

Query: 810 SSSIFIAAPILLFIYDWRAK 829
            +++ ++  +   +   +  
Sbjct: 492 INALTLSPALCALLLRKQKP 511



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 76/257 (29%), Gaps = 15/257 (5%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V+     S   S  +   +    D    + +    +   S A+          + E   
Sbjct: 794  YVNNDEGSSVPLSTFVNIENIVGPDYTNRYNLYRSVELTGSPAKGFTSAQAMAALEETAA 853

Query: 648  LSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWI---RFKWYFALGAITTLILD 703
                +        +S +  +      ++     + +++ +      W      +      
Sbjct: 854  QVLAEGMGYEWSNMSYQEKQSAGTGSMVFVFSLIFVFLILAAQYESWSLPFSILLGTPFA 913

Query: 704  ITKTLGFFALFG-----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            I        +        E N+ A  A++ LI  +  + +++ +  +     +   +S  
Sbjct: 914  IFGAFLALYVARMYSESFELNVFAQIALVMLIAMAAKNAILIVEFAK---LEFDKGLSLF 970

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFI 815
            D   KS        + T+ +  + VLP+ V    G        + +  G+ +A    +F 
Sbjct: 971  DAAVKSARLRFRPILMTAFSFILGVLPLVVATGAGAEARVVMGMALLGGMTLATLLGVFF 1030

Query: 816  AAPILLFIYDWRAKNAR 832
               + + I        +
Sbjct: 1031 YPMLFVLIGKIARYEKK 1047


>gi|86359004|ref|YP_470896.1| multidrug ABC transporter [Rhizobium etli CFN 42]
 gi|58294347|gb|AAW70091.1| RmiB [Rhizobium etli]
 gi|86283106|gb|ABC92169.1| probable multidrug efflux transporter protein [Rhizobium etli CFN
           42]
          Length = 1036

 Score =  163 bits (412), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 89/684 (13%), Positives = 187/684 (27%), Gaps = 39/684 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL           + ++P   P              +      
Sbjct: 7   RRPIFAWVIAITIMLAGLLAIF-----TLSISQYPDIAPTTVR---------INATYRGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + L        +       I L+F  S   +    +V   LQ 
Sbjct: 53  SAETVEKSVTTIIEDGMTGLDDLTYMTSTSSTGSASIQLTFGTSIDPDIAQVQVQNKLQL 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D     +  T      +++          ++++    +     DQI   E   
Sbjct: 113 VQSQLPGDVIDAGISVTRSTSSILLVGSLVSTDGKRNSVDLGNIMSTSIEDQIQRLEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +   T + ++      N        G +          
Sbjct: 173 SINVFGSG-YAMRIWLDPFKLVKYQLTPSDVTAAIQAQNTQVSVGSLGAQPTTPGQQLNV 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++                     I   E             I           
Sbjct: 232 TITAQSQLT-------------TVADFEHIILKVEKDGATVRLSDVSRIEIGQESYGGSS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +    +     +   T         ++                      S   
Sbjct: 279 RYNGLPSSGFAVNLAIGANAIDTAARVRSALDVIGRTLPEGVKITYPYDTTPFVELSIEK 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +VL + +   +  L+   ++ + ++ T  +L+  G ++   ++  +V
Sbjct: 339 VVHTLIEAIVLVFVVLLVFLQNLRATLIPTIAVPVVLLGTFGVLAATGYSINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     + + S   + +         I    +      + + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERIMSEEKLSPLEATEKSMGEITGAIVGIALVLTAVFIPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFF 532
           GG      R F+IT+  ++L+S   AI +  A+   +        K       N      
Sbjct: 459 GGSTGIIYRQFSITIVSAMLLSALVAIVLTPALCATMLKPVSEHRKHRVGDWFNRNFTRS 518

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY--GIDFKGGIQLGVLANRPVD 590
                  I ++  R   V +  L        LFT   +     + +G +   V       
Sbjct: 519 TKGYVRTIGYLLKRPIRVMLVFLLVGAGCAYLFTRLPSSFLPQEDQGVLLTIVTTPPGST 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               ++ +E ++      +    E  F        G       V   +K       P  +
Sbjct: 579 TQQTQAVVEKVENYYRENEKDAVESVFGALGFGFNGSGQNSAIVFTKLKDFSLRTDPNLS 638

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
            Q+      +    +    +  ++
Sbjct: 639 AQSVVNRALRSFFAMREAQVFALL 662



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G  A  G   N   + A++  IG  V+D +VV + +     
Sbjct: 361 LRATLIPTIAVPVVLLGTFGVLAATGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERI 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S  +  +KS+ E  G  V  ++      +PMA +GGS       F+I +   ++
Sbjct: 419 MSEEKLSPLEATEKSMGEITGAIVGIALVLTAVFIPMAFFGGSTGIIYRQFSITIVSAML 478

Query: 807 VAASSSIFIAAPI 819
           ++A  +I +   +
Sbjct: 479 LSALVAIVLTPAL 491



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 66/169 (39%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   IS + + + +   ++ W      I  + + I   L    LFG   ++     +
Sbjct: 866  QAPILYAISVLVVFLCLAALYESWSIPFSVIMAVPVGILGALAAATLFGQANDVYFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT IG +  + +++ +  +       + +   +   ++    L   + TS+A  + V+P+
Sbjct: 926  LTTIGLAAKNAILIVEFAKD---RMESGLGLYEATLEAARLRLRPIIMTSLAFILGVVPL 982

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            AV    G +   +  I +  G++ A    IF      + I    A   +
Sbjct: 983  AVATGAGSAAQNAIGIGVLGGMLAATMLGIFFVPSFFVVIRRIFATRGK 1031


>gi|23010320|ref|ZP_00051049.1| COG0342: Preprotein translocase subunit SecD [Magnetospirillum
           magnetotacticum MS-1]
          Length = 361

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 158/364 (43%), Positives = 230/364 (63%), Gaps = 3/364 (0%)

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
           Q++E+IR+RID  G  E +IQ+ GS RIL+Q+PG Q+P  L   LG TAK+ F  +    
Sbjct: 1   QAIEVIRRRIDFGGTKEPSIQQQGSDRILVQVPGLQNPQELEDQLGKTAKLEFRMLAD-- 58

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281
                   +   +D  G +  VE ++   G  L  A   FDP+TH+P+V   F+  GA+R
Sbjct: 59  -SPSGDVDLLPSKDEGGAKVPVERRIMADGSDLTDAQPAFDPQTHEPMVSFKFNLRGAQR 117

Query: 282 FFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
           F + T +N+G+ +A+VLD  + +APVI  AI  G  QI+GNFT++ A  L+ +LRAG+LP
Sbjct: 118 FGQATSENVGRRMAIVLDNVIQSAPVIRSAITGGSGQITGNFTVKDANDLSILLRAGALP 177

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
            KL +VE R VG  LG DSI  G  A +    L++ FM   YG +G +A+ ++ ++V L 
Sbjct: 178 AKLTVVERRVVGPGLGRDSIEAGKLATLVAGALVIAFMFATYGTFGFIANIALIVHVGLI 237

Query: 402 LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
           L L+S+L AT+TLP IAGIVL IG AVDSN+L+ ER+REE+R  +S+  +L  GF RA++
Sbjct: 238 LGLMSVLEATMTLPGIAGIVLTIGTAVDSNVLIYERMREESRSGRSLVSALQAGFDRAFA 297

Query: 462 TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           TI DSN T  IA ++LFF G G V+GFA+   L IL ++ TA+++ R M+     + + K
Sbjct: 298 TIIDSNSTMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIAVWYNWFRPK 357

Query: 522 SIDI 525
           ++  
Sbjct: 358 ALPF 361



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 76/174 (43%), Gaps = 4/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + R+ I  G +  +++   ++ +++  +   F   A   LI+ +   LG  ++    
Sbjct: 189 GPGLGRDSIEAGKLATLVAGALVIAFMFATYG-TFGFIANIALIVHVGLILGLMSVLEAT 247

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++Y+RMR+  +   +  S    +    +      + ++ 
Sbjct: 248 MTLPGIAGIVLTIGTAVDSNVLIYERMREESR---SGRSLVSALQAGFDRAFATIIDSNS 304

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I+ L +   G   +  FA+    GI+    +++ +   ++   Y+W    A
Sbjct: 305 TMAIAALLLFFMGSGPVKGFAVVFILGILTTVITAVTLTRMMIAVWYNWFRPKA 358


>gi|148240502|ref|YP_001225889.1| RND family multidrug efflux protein [Synechococcus sp. WH 7803]
 gi|147849041|emb|CAK24592.1| Multidrug efflux transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1)
           family (2.A.6.2.), RND superfamily [Synechococcus sp. WH
           7803]
          Length = 1135

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/525 (12%), Positives = 143/525 (27%), Gaps = 33/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I  +GL+       P   ++  P   P                     +
Sbjct: 10  RPVLTTVCSILIVIVGLIAI-----PILPIENLPDIAPPTV---------KVRATYTGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++       +      + I ++FA     +     V   +  
Sbjct: 56  AVSVEEGVTTVLEQQINGVENMDFIKSNSSSDGVSAIDVAFASGTDGDINQVNVQNRVSL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQIGISE 178
              +L  + +K  +         +++              A   S  +  +  D I    
Sbjct: 116 AEPQLPEEVRKAGVTVNKASNSILLVYNFGSANPEEILYSAETISGLLDLKLTDSIKRVT 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                       +      DPS+L     T+  +       N        G         
Sbjct: 176 GVGDLTYFGNRKLAFRLWLDPSKLSTYGLTSTDVVNQLSSQNRLVPAGQVGGEPSPKGQE 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + V+ +  +  +                   +   + G                +  +
Sbjct: 236 FTFTVQLQGRLRSVEEFENM------------IVRTADEGGLVRLRDVGSVQLGGESYAV 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L                +     +    + A                 N      S
Sbjct: 284 SATDLQGVPSVGLAVYQLTGSNALEVSDGVKKVLAEFEKTMPIGMKMEKIYDNTDFITAS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 +      LV+++LF+ +   K  LV   +I + +I T  L+   G +L   ++ 
Sbjct: 344 IKGVVNSLRDAVILVVLILFLFLQNWKATLVPGIAIPVALIGTFGLVLAFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+VL  GL VD  I V E    +  +  S   +        +S I  +++      + + 
Sbjct: 404 GLVLATGLVVDDAITVIEDTSTKKSEGLSALEAAKSTMDELFSAIIATSLVKFAVFLPVL 463

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           FF    G   + FA T+  SI IS F A++    +   ++  +  
Sbjct: 464 FFPGATGTIYKQFAATVIFSIAISTFNALTFSPMLSALLLARESK 508



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 55/144 (38%), Gaps = 6/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T G    FG   N   +  ++   G  V+D + V   +     
Sbjct: 369 WKATLVPGIAIPVALIGTFGLVLAFGFSLNQLTLFGLVLATGLVVDDAITV---IEDTST 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
             +  +S  +    +++E     + TS+  F   LP+  + G    I   FA  + F I 
Sbjct: 426 KKSEGLSALEAAKSTMDELFSAIIATSLVKFAVFLPVLFFPGATGTIYKQFAATVIFSIA 485

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++  +++  +  +   +    +K+
Sbjct: 486 ISTFNALTFSPMLSALLLARESKD 509



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 78/241 (32%), Gaps = 9/241 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D S  +  L        +          L R     G   A     + +         L+
Sbjct: 882  DQSGEQIPLSEFFTVRETLGPTVVPHFNLYRAIKIEGTPAAGKSSGQAITAMKGTFETLN 941

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                          E+    +  VI +   + +Y+ +      +   L  + T+   +  
Sbjct: 942  PQGLGFDWTGISREEVKAGALAVVIFALGILAVYLVLSAQYESYSDPLIILMTVPTAMLG 1001

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L F AL G   N+ A   ++ LIG +  + +++ D      +      +  D    +  
Sbjct: 1002 ALVFLALRGEVLNVYAQVGLVMLIGLAAGNGILIVDMAN---QRMQAGANALDAARFAAG 1058

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + T++++    +P+    G+      S    +  G+++A   S+F+     + +
Sbjct: 1059 SRLRPILMTAISSLFGFIPLVFASGAGARSQTSLGAVVFGGLLIATVLSLFVVPVFYVVM 1118

Query: 824  Y 824
             
Sbjct: 1119 K 1119


>gi|295690051|ref|YP_003593744.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
 gi|295431954|gb|ADG11126.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
          Length = 1045

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/521 (11%), Positives = 146/521 (28%), Gaps = 38/521 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   ++C IGL            +   P+  P                     
Sbjct: 8   RRPVFAAVAAIILCVIGLAA-----FTGLPIRELPNVDPPVV---------SVSTSYRGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + ++       S R  +++I ++F   R  ++ A+ V   +  
Sbjct: 54  SAEVIEERITQVIERQVAGIQGIDRVNSSSRDGRSQINITFTLDRDLDDAANDVRDAVSR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L        +         I++       +    +E +    R  ++++       
Sbjct: 114 VASNLPDQADPPQIAKANADSSPIIILNLTSSTL--SPLELADYADRYLVERMSTVPGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   +   L  +    +P  +     T   +       N               +     
Sbjct: 172 QAGLNG-QLYAMRIWLNPDAMAARGVTVDDVETALNSENVELPAGSLESSAKDFTIRVSR 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +                     + +   +             + +         
Sbjct: 231 AYSKPEDF------------------VQLPVRAADANGFVVRLGEIARVEEGADERRKIF 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + ++Q +     +        +     P    I    N      +   
Sbjct: 273 RGNGQNQVGIFLTRQSQANDVAISKVVDQEIKSINETLPPGTQLIKAVDNSIFTAEAIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV +V  + +   +  L+      + ++ T  +L+ LG +L L ++  +V
Sbjct: 333 VWITMGISVALVALVNLLFLGSWRSALIPSIVAPICILSTFIVLAPLGFSLNLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E I+    + +    +   G  + +  +  + I  +     L F  
Sbjct: 393 LAVGLVVDDAIVVVENIQRRVDEGEPAPVAALRGTRQVFFAVVATTIVLISVFAPLMFLP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           G   R     A+ +  ++  S   A ++   +   +++   
Sbjct: 453 GYTGRLFVELAVAIAAAVGFSALLAFTLSPMLASKLLKPAH 493



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 55/138 (39%), Gaps = 8/138 (5%)

Query: 696  AITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            A+  L + +    G F L   G   N  +   ++ L+G +  + +++ +      +L   
Sbjct: 885  AVIMLTVPLAVLGGLFGLLVMGSTINTYSQIGLIILVGIAAKNGILIVEFAN---QLRDE 941

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             +  R+ + ++    L   V TS+A  +  LP+ +W   G     +    +  G +VA  
Sbjct: 942  GLKIREAVIEAAALRLRPIVMTSIATAMGALPLMLWTGAGAGSRQTIGSVIFMGAIVATL 1001

Query: 811  SSIFIAAPILLFIYDWRA 828
             ++F+       +  +  
Sbjct: 1002 LTLFVVPVFYNLLARFTK 1019



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/236 (17%), Positives = 82/236 (34%), Gaps = 8/236 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +    E        F+     +  +   +    + VA ++V++   K I E +P 
Sbjct: 253 VRLGEIARVEEGADERRKIFRGNGQNQVGIFLTRQSQANDVAISKVVDQEIKSINETLPP 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKT 707
            T     +     + E I +  + + IS   + +  +     W  AL       + I  T
Sbjct: 313 GTQLIKAVDNSIFTAEAIHEVWITMGISVALVALVNLLFLGSWRSALIPSIVAPICILST 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A  G   NL  + A++  +G  V+D +VV + +    +             +   +
Sbjct: 373 FIVLAPLGFSLNLLTLLALVLAVGLVVDDAIVVVENI---QRRVDEGEPAPVAALRGTRQ 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAFGIVVAASSSI--FIAAPIL 820
                V T++       P+    G     F  + +A    V   S++  F  +P+L
Sbjct: 430 VFFAVVATTIVLISVFAPLMFLPGYTGRLFVELAVAIAAAVG-FSALLAFTLSPML 484


>gi|264679642|ref|YP_003279549.1| acriflavin resistance protein [Comamonas testosteroni CNB-2]
 gi|262210155|gb|ACY34253.1| acriflavin resistance protein [Comamonas testosteroni CNB-2]
          Length = 1066

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 70/617 (11%), Positives = 169/617 (27%), Gaps = 45/617 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+L           +   P                    +     
Sbjct: 10  RPIATSLLMVAVLISGILA-----YRLLPISALPEVDYPTIQ---------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + I+L FA     +    +V   +   
Sbjct: 56  PDVMTSNVTAPLERQFGQMPGLDQMSSTSSGGASVISLRFALDMSMDVAEQQVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     L +      + VL+   I       I+ +  +  +   ++   +    
Sbjct: 116 TNLLPSDLPMPPLYSKVNPADAPVLT-LAISSPSLPVIKINDLVENRLAPKLSQVKGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P+ L     T   +       N                      
Sbjct: 175 VAIAGARRPAVRIQANPAALASFGMTLDDVRTAISAANVKTAKG---------------S 219

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +     S I  N    +     +  +   + + +      +   D     LA       
Sbjct: 220 FDGPNRASTIDANDQMQSAAEYRNLIIAFKNGNPVRLSDVAQTVDDAENTRLAAWSGTPE 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +          +   +   T++    L   L+          V          S    
Sbjct: 280 TGSKSAVILNIRRQPGANVIDTVDAIKNLLPQLKETLPASIDVQVLTDRTVTIRASVKDM 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+F+ +      L+   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 340 QFELALAIALVVMVIFLFLRSASATLIPSVAVPLSLVGTFGVMYLAGFSINNLTLMALTI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     K +    +   G  +   TI    I+ +   + L F G 
Sbjct: 400 ATGFVVDDAIVMIENIARYVEKGEPPMQAALKGAKQIGFTIISLTISLVAVLIPLLFMGD 459

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------------IRYKKMKSIDINP 527
             G     FAITM ++ILIS   ++++   +   +                   ++    
Sbjct: 460 VVGRLFHEFAITMTVAILISAVVSLTLTPMLCARLLRHQPEAEKKKAESKGFDAAVARFF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +      ++   +       +  +         +     G I     A++
Sbjct: 520 DKVIAEYGRMLTWVLDHSKLTWLVFIATLVVTVLLYFVVPKGFFPEQDTGTIAATTEADQ 579

Query: 588 PVDLSVVRSNLESLQIG 604
            +  + +    ++L   
Sbjct: 580 SISFAAMAERQQALAEH 596



 Score = 89.0 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 81/254 (31%), Gaps = 8/254 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  +          N                     +R Q           +  ++ +  
Sbjct: 254 VRLSDVAQTVDDAENTRLAAWSGTPETGSKSAVILNIRRQPGANVIDTVDAIKNLLPQLK 313

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             +     +Q        I   +      + + I+ + M+I++++R      L     + 
Sbjct: 314 ETLPASIDVQVLTDRTVTIRASVKDMQFELALAIALVVMVIFLFLR-SASATLIPSVAVP 372

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +  T G   L G   N   + A+    G+ V+D +V+ + +    +            
Sbjct: 373 LSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMIENI---ARYVEKGEPPMQAA 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            K   +     +  +++    ++P+   G   G +   FAI M   I+++A  S+ +   
Sbjct: 430 LKGAKQIGFTIISLTISLVAVLIPLLFMGDVVGRLFHEFAITMTVAILISAVVSLTLTPM 489

Query: 819 ILLFIYDWRAKNAR 832
           +   +   + +  +
Sbjct: 490 LCARLLRHQPEAEK 503


>gi|319794107|ref|YP_004155747.1| acriflavin resistance protein [Variovorax paradoxus EPS]
 gi|315596570|gb|ADU37636.1| acriflavin resistance protein [Variovorax paradoxus EPS]
          Length = 1046

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/554 (12%), Positives = 162/554 (29%), Gaps = 40/554 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+L+ ++   GLL           +  FP                    +L   
Sbjct: 9   RNPIPAVMLFVLLTFGGLLS-----FNAMKVQNFPDIDLPTVT---------VSALLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + ++        ++     + + F   +  +   D V   +Q 
Sbjct: 55  APSQLETDVARKLENSIATVQGLKHITTKVQDGAATLIVEFRLEKPVQEAVDDVRSAVQR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  D +  ++         ++     I      A   S  +      ++       
Sbjct: 115 VRADLPADVRDPVVTKLDLAGQPVL--AFTIASTQMDAEALSWYVDNDVTKKLLALPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  Q+  + DP +L+ L  + A +S           G  F +           
Sbjct: 173 AVNRVGGVTRQVHIDLDPGKLQALGASAADISRQLRQVQVESAGGRFDLGGSEQPVRTLA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   +++ I +                         RR        I   +A    G 
Sbjct: 233 TVQSADQLNDIQIVL--------------------SDGRRVRLDQVARISDTIAEPRSGA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     +     S              +RA    I+L       V       + 
Sbjct: 273 LLNGKPVVGFEVARSRGASEVEVGHAIQKALGEMRAQRPDIELTE-AFNFVDPVEEEYNG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+++ +   +   V+  ++ ++VI     + +LG ++ + S+  + 
Sbjct: 332 SLHLLYEGAILAVIVVWLFLRDWRATFVSAVALPMSVIPAFIGMFVLGFSVNVISLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEVENIVRHLRMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F  T  L++  S+  A  +   M  +I++    +  +   L  +    +  
Sbjct: 452 GVAGKFFKQFGWTASLAVFASLVVARVLTPMMAAYILKPIVGEEKEPGWLRWYMRAVEWS 511

Query: 539 AIQFMRARFWGVGI 552
                +        
Sbjct: 512 THNRFKTMVLATLF 525



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/159 (12%), Positives = 55/159 (34%), Gaps = 10/159 (6%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +A+++       W     +   L + +        + G   N+ ++ A+  ++G  V
Sbjct: 339 GAILAVIVVWLFLRDWRATFVSAVALPMSVIPAFIGMFVLGFSVNVISLLALSLVVGILV 398

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +V  + +   ++      +      ++ +E     + T+       LP A   G   
Sbjct: 399 DDAIVEVENI---VRHLRMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGVAG 455

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                F    +  +     +S+ +A  +   +  +  K 
Sbjct: 456 KFFKQFGWTASLAV----FASLVVARVLTPMMAAYILKP 490



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/176 (11%), Positives = 69/176 (39%), Gaps = 7/176 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            E+   ++  EL     + ++   + + I + + FK +   +  +  L L +        +
Sbjct: 832  EVGDAEVMTELFASFGLAMLTGVLCIYIVLVLLFKDFLHPVTILCALPLALGGAFVGLLI 891

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++ ++  ++ L+G +  + +++ +     +      +S  D +  + ++     +
Sbjct: 892  GQKALSMPSLIGLIMLMGIATKNSILLVE--YAIVARRDHGMSRWDALRDACHKRARPII 949

Query: 774  YTSMAA---FISVLPMAVWGGSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             T++A     + +        S   S  A+ +  G++ +   S+ +   +  +I D
Sbjct: 950  MTTLAMGAGMLPIAVGFGAADSSFRSPMAMAVIGGLITSTVLSLLVVPAVFTYIDD 1005


>gi|224024667|ref|ZP_03643033.1| hypothetical protein BACCOPRO_01395 [Bacteroides coprophilus DSM
           18228]
 gi|224017889|gb|EEF75901.1| hypothetical protein BACCOPRO_01395 [Bacteroides coprophilus DSM
           18228]
          Length = 1035

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/583 (11%), Positives = 156/583 (26%), Gaps = 44/583 (7%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPVDQYPQITPPV-------------VKISASYPGASAVTVSQAVATPIEQELNGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMESNSSNSGGFSATVTFDISADPDLAAVEIQNRIKLAESRLPAEVVQNGITIEKQAASQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++      D      I  S       +D +       +          +    DP+RL  
Sbjct: 138 LMTLCLTSDDPKFDEIYLSNFATINVLDLLRRIPGVGRVSNVGSRYYAMQIWVDPARLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T   +       N      + G + +   D                +          
Sbjct: 198 FGLTVQDVQNALKDQNRESAAGVLGQQPVTGLDIT--------------IPITAQGRLSS 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +            + A              +    
Sbjct: 244 VSQFEEIVLSTNADGSLVRMRDVARVSLEAQSYNTESGINAGNAAVLGIYMLPGANAMEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E+     A +                      S      T      LV++V+F+ +   
Sbjct: 304 AESVKKEMAEISKNFPEGLEYNFPFDMTKYISESIHEVYKTLFEALFLVIVVVFLSLQNW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  ++   ++ +++I T   + + G +L + ++ G+VL IG+ VD  I+V E +     +
Sbjct: 364 RATVIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMEE 423

Query: 445 NQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISM 500
                + +           I  +++      V + F     G   R F++T+ +S+L+S 
Sbjct: 424 EHLPPYEATKKAMDGLVGAIIATSLVLAAVFVPVSFLSGITGQLYRQFSVTIAISVLLST 483

Query: 501 FTAISIVRAMMIFI--------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
             A+++   M   I         + +  ++I+             I       +      
Sbjct: 484 VVALTLSPVMCSLILKPADPNKPKNRVFRAINRWLDVGNHHYIAEIRRVIRHPKRVISFF 543

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
            I+                  + +G   + +       L   R
Sbjct: 544 GIVLVFIFTLYRLIPTSFLPTEDQGYFTVELELPEGTTLERTR 586



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 95/247 (38%), Gaps = 13/247 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  +       G    L        +++     ++    +I++  P     
Sbjct: 265 DVARVSLEAQSYNTESGINAGNAAVLGIYMLPGANAMEVAESVKKEMAEISKNFPEGLEY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N      K   E I +    +  +   +++ +++  + W   +  I  + + +  T GF 
Sbjct: 325 NFPFDMTKYISESIHEVYKTLFEALFLVIVVVFLSLQNWRATVIPIVAVPISLIGTFGFM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINET 768
            +FG   N+  +  ++  IG  V+D +VV    +R+ +   L        +   K+++  
Sbjct: 385 LIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMEEEHL-----PPYEATKKAMDGL 439

Query: 769 LGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +G  + TS+      +P+  + G  G +   F++ +A  ++++   ++   +P++  +  
Sbjct: 440 VGAIIATSLVLAAVFVPVSFLSGITGQLYRQFSVTIAISVLLSTVVAL-TLSPVMCSLIL 498

Query: 826 WRAKNAR 832
             A   +
Sbjct: 499 KPADPNK 505



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 58/148 (39%), Gaps = 6/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L + +       A+ G+E +      ++ LIG +  + +++ +  +  +
Sbjct: 889  SWSIPVAVLISLPVAVLGAYAGVAICGLENDTYFQIGLVMLIGLAAKNAILIVEFAKDEV 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                      +    +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 949  ---DKGRDVVEAALYAAQLRFRPILMTSLAFILGMLPMVIASGPGSASRQAIGTGVFFGM 1005

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            +VA +  I +     + IY    K  ++
Sbjct: 1006 LVAVTVGIVLVPFFFVMIYKTTHKLKQL 1033


>gi|217977129|ref|YP_002361276.1| acriflavin resistance protein [Methylocella silvestris BL2]
 gi|217502505|gb|ACK49914.1| acriflavin resistance protein [Methylocella silvestris BL2]
          Length = 1040

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/559 (13%), Positives = 163/559 (29%), Gaps = 39/559 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GL       + +  + ++P                         
Sbjct: 9   RRPVLASVVSLLILLVGL-----QAMSKLQVRQYPELSSTTITIT---------TQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     +  +  +     V + +Q  + ITL+   +   +     V   +  
Sbjct: 55  NADVIKGFITTPIAQAVASAEGIDTLVSNSQQNTSTITLNLILNANADRAVADVLSKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  +    ++V  T    +++    N    +    + +  + R    ++   +   
Sbjct: 115 VKYQLPREALDPIVVKQTGDSTALLYMSFNSK--VMSGSQITDYLTRVVQPKLQTIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+R+     T   +       N +         F++ S   Q 
Sbjct: 173 NAQILGGQTFAMRVWLDPNRMAARGVTPNDVRGALAANNFTAAAGQIKGDFVQTSINAQT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +    +     G          +I      V    
Sbjct: 233 SLDSA--------------------QAFSQLVVSAKGDALTRLGAIADIELGPESVDSSS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V                 +    I         L+A         +          S   
Sbjct: 273 VFDGLKAVFVGIYPTPTANPLDVINNVREAFPELKAQLPVGLDAAIAYDATEFIRASIYE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T    A +V+IV+F+ +   +  ++   +I L+++  + +L  LG +L L ++  +V
Sbjct: 333 VKKTLIEAALVVIIVIFLFLGSLRATIIPIVTIPLSLVGVMIILLALGYSLNLMTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I+V E I        +   +   G       +    IT       + F  
Sbjct: 393 LAIGLVVDDAIVVVENIYRHIEDGMTPKEASLQGAREITGPVISMTITLACVYAPIGFVS 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  ++++S   A+++   M   +++    K      L          
Sbjct: 453 GLTGALFREFAFTLAGAVVVSGVIALTLSPMMCSLLLKPPSDKHRGFPALLDRLFNWLRD 512

Query: 539 AIQFMRARFWGVGISILFS 557
           A Q    +        +  
Sbjct: 513 AYQKRLHKTLNFRAMTMLI 531



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 63/154 (40%), Gaps = 7/154 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + +++           +  I T+ L +   +      G   NL  + A++  IG 
Sbjct: 338 IEAALVVIIVIFLFLGSLRATIIPIVTIPLSLVGVMIILLALGYSLNLMTLLALVLAIGL 397

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG- 790
            V+D +VV + +    +     ++ ++   +   E  G  +  ++       P+  V G 
Sbjct: 398 VVDDAIVVVENI---YRHIEDGMTPKEASLQGAREITGPVISMTITLACVYAPIGFVSGL 454

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            G++   FA  +A  +VV+   ++   +P++  +
Sbjct: 455 TGALFREFAFTLAGAVVVSGVIAL-TLSPMMCSL 487



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 85/246 (34%), Gaps = 20/246 (8%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++ +    +            L  + +           L+   K++         Q   
Sbjct: 780  ASISNSVQPNGLPTFQQLNSATLQGVPFPGHTMGEAISFLQAKAKELMPPGFTVDYQGES 839

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +    L    ++  + + I + + +  +F+ +      +  L   +   L    + 
Sbjct: 840  RQYVQEGNTL----LLTFVFALIVIFLVLAAQFESFRDPFIILIALPTSMFGALLPLNIL 895

Query: 715  G----IEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINE 767
            G       N+ +   ++TLIG      +++ +   RM++        +S R+ I+ +   
Sbjct: 896  GVVGAASMNIYSQIGLVTLIGLISKHGILMVEFANRMQEE-----EGMSRREAIEHAAAV 950

Query: 768  TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + T+ A  + ++P+ +    G S   +  + +A G+ +    ++F+   +   I 
Sbjct: 951  RLRPILMTTAAMVVGMIPLILAEGAGASSRFAIGVVIASGMSIGTLFTLFVTPAVYTLIA 1010

Query: 825  DWRAKN 830
                + 
Sbjct: 1011 RDHNRP 1016


>gi|297571396|ref|YP_003697170.1| protein-export membrane protein SecD [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931743|gb|ADH92551.1| protein-export membrane protein SecD [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 618

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 114/588 (19%), Positives = 223/588 (37%), Gaps = 34/588 (5%)

Query: 8   VILYSMICCIGLLIAL-PNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DED 63
            ++   +  + L  AL       +     P         L LDL GG+ ++L     D  
Sbjct: 17  RLITLTVMIVALFAALGFGTFTGAKNRFLPE--------LALDLEGGTQIILTPATTDGS 68

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
           +  +  ++   + +R  +   G+    +  Q  + I ++       +     +      V
Sbjct: 69  EVTDEDVKQAIEIIRQRVDASGVAEAEITAQGGSNIIVALPG--QPDKATLDLVRT-SAV 125

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                V    N    + E  +  +  +       +   EQ  + + +  D+ G  + +  
Sbjct: 126 LRMRPVLSYANPKAISKEDLVKQLGDKAQGLDPKTMTDEQYKDAVMKLADKNGDGQLSDA 185

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +           +      L+                            +       
Sbjct: 186 PEQTPANASDPAWITEQVVYNSLILECGSKDQAIASN----ADDPAKALVSCEPGRGTKY 241

Query: 243 VEDKVEISGIHLNGATA-----NFDPKTHKPVVDISFDEMGARRFFEVTR-----DNIGK 292
           +    E+ G  ++ A++               V ++F+  G+++F EVT       +   
Sbjct: 242 ILGPAELEGSQISSASSGPSVNQQGQPDGGFAVHMNFNSEGSKKFAEVTGRISKLKSPQN 301

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
             A+VLDG+ ++AP  +  I  G+AQI+G+F  + A  LA  L  GSLP+   +  E  +
Sbjct: 302 QFAIVLDGKTVSAPKTDNPITGGQAQITGSFKAKEAANLANQLNFGSLPLFFEVQSEEQI 361

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
            A LG++ +  G  A + G++ IVL+MI  Y   GLVA  SI ++  L+  ++SLL  T+
Sbjct: 362 SATLGAEQLESGLIAGLFGILFIVLYMIWQYHALGLVAIASIAVSTGLSFFVISLLSWTM 421

Query: 413 T----LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
                +  + GI++ +G+  DS I+  ERIR+E R  +++   ++ G+ RA  TI  S++
Sbjct: 422 DYRLSMAGVLGIIISVGVTADSFIVYFERIRDEIRDGRTIRGGIEHGWERARRTIIISDV 481

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
             L+A  VLF    G+VRGFA T+G++ ++ +   +     +M ++ +            
Sbjct: 482 VNLVAASVLFILTVGSVRGFAFTLGVTTVLDLIVVMMFTYPIMHYLGKTAYFGEGKRGSG 541

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                +      +                  +         +Y    +
Sbjct: 542 LDADKLERTPIYRGRAYSAPKPTKKTRTVRATGASGNVDLHDYEYPDE 589



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 81/234 (34%), Gaps = 8/234 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            N  ++ +   +      +           G   A+       +     +     +Q+ E
Sbjct: 300 QNQFAIVLDGKTVSAPKTDNPITGGQAQITGSFKAKEAANLANQLNFGSLPLFFEVQSEE 359

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +   +  E +  G++  +   + +++Y+  ++     L AI ++ +    +    +L  
Sbjct: 360 QISATLGAEQLESGLIAGLFGILFIVLYMIWQYH-ALGLVAIASIAVSTGLSFFVISLLS 418

Query: 716 IE----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
                  ++  V  ++  +G + +  +V ++R+R  ++      + R  I+         
Sbjct: 419 WTMDYRLSMAGVLGIIISVGVTADSFIVYFERIRDEIRD---GRTIRGGIEHGWERARRT 475

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + + +   ++   + +     +  FA  +    V+     +    PI+ ++  
Sbjct: 476 IIISDVVNLVAASVLFILTVGSVRGFAFTLGVTTVLDLIVVMMFTYPIMHYLGK 529


>gi|237709037|ref|ZP_04539518.1| cation/multidrug efflux pump [Bacteroides sp. 9_1_42FAA]
 gi|237724628|ref|ZP_04555109.1| cation/multidrug efflux pump [Bacteroides sp. D4]
 gi|265755536|ref|ZP_06090157.1| cation/multidrug efflux pump [Bacteroides sp. 3_1_33FAA]
 gi|229436823|gb|EEO46900.1| cation/multidrug efflux pump [Bacteroides dorei 5_1_36/D4]
 gi|229457099|gb|EEO62820.1| cation/multidrug efflux pump [Bacteroides sp. 9_1_42FAA]
 gi|263234142|gb|EEZ19735.1| cation/multidrug efflux pump [Bacteroides sp. 3_1_33FAA]
          Length = 1049

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/519 (11%), Positives = 154/519 (29%), Gaps = 33/519 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I C+G+L  L        + +FP  +P +                   
Sbjct: 7   KRPILSGVISVIIVCLGVLSIL-----TLPITQFPDIVPPSVT---------VTARYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D ++  +    +   + +                +T + F      +  A  V   + 
Sbjct: 53  SADVMSKTVATPLERAINGVPGMTYMTTVCTNDGMSLTTIYFKVGTDPDVAAVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  ++T  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVITEKEVNSMLMYLNIMSTDSAHTEKFVYNFADINILRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P+RL         ++      N        G+   +     Q
Sbjct: 173 GLVEIMGSRDYAMRVWLNPNRLAAYNMVPQDVTEAIRNQNIEAAPGKTGISSDKLPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++                      +    +                 I          
Sbjct: 233 YVLQ-------------YTGKFSTAEEYGEIVLKALPDGSLLRLKDVATIEFDSEDYNMT 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSD 359
            +         +   +   +    I+      A ++ +   P     +          S 
Sbjct: 280 SMTDGRPSASIMIKQRPGSNAREVIQNIKTKMAEIKESSFAPGMDYNISYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV IV+++ +   +  L+   ++ ++++ T   + +LG ++ + ++  
Sbjct: 340 QSVLKTLLEAFILVFIVVYIFLQDFRSTLIPAIAVPVSLVGTFFFMEMLGFSINMLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IG+ VD+ I+V E +  +    + S + +     +     I    +      V + 
Sbjct: 400 LVLAIGIVVDNAIVVVEAVHVKMHHEKLSPYKASVAAINEIGGAIIAITLVMSAVFVPVG 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           F  G      R F++T+ ++I+IS   A+++  A+   +
Sbjct: 460 FMQGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALL 498



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 87/233 (37%), Gaps = 6/233 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +S      S  +     + +++ +           +   + +            N   
Sbjct: 270 EFDSEDYNMTSMTDGRPSASIMIKQRPGSNAREVIQNIKTKMAEIKESSFAPGMDYNISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I+  +  ++ + I + I ++I    +   L     + + +  T  F  + G
Sbjct: 330 DVSRFLDASIQSVLKTLLEAFILVFIVVYIFLQDFRSTLIPAIAVPVSLVGTFFFMEMLG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+  + A++  IG  V++ +VV + +   +K++   +S       +INE  G  +  
Sbjct: 390 FSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHHEKLSPYKASVAAINEIGGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++      +P+    G+V      F++ +A  IV++  +++ ++  +   +  
Sbjct: 448 TLVMSAVFVPVGFMQGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLK 500



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 87/288 (30%), Gaps = 14/288 (4%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
            + G   S  F             +              A       V  SN  ++     
Sbjct: 753  YIGSFYSSNFIRFGQMYKVMLQASPEYRMNPEDLYKFYAKNKDGNMVPYSNFMTMDRIFG 812

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              Q           +  +P + V+   V+E V++   E +P         V  +      
Sbjct: 813  PNQITRYNMFTSALITGEPAEGVSSGEVIEAVEQIAKETLPRGYDIEWSGVTREEKD--- 869

Query: 667  RKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
              G    I     + +Y+ +             I +L   I  +  F  L G+E N+ A 
Sbjct: 870  SGGQTVFIFGICLLFVYLLLAAQYESLLLPFPVILSLPAGIFGSYFFLQLAGLENNIYAQ 929

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFIS 782
             A++ LIG    + +++     +    Y    +S  D   +     L   + TS A    
Sbjct: 930  VALVMLIGLLGKNAILIV----EMANQYRKQGMSIFDAAVRGSVSRLRPILMTSFAFICG 985

Query: 783  VLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++P+    G   +   S     A G+ +     IF+   + L    W 
Sbjct: 986  LIPLVMASGAGALGNRSIGTAAAGGMFIGTFVGIFLVPGLYLIFESWS 1033


>gi|239828479|ref|YP_002951103.1| acriflavin resistance protein [Geobacillus sp. WCH70]
 gi|239808772|gb|ACS25837.1| acriflavin resistance protein [Geobacillus sp. WCH70]
          Length = 1023

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 90/673 (13%), Positives = 201/673 (29%), Gaps = 42/673 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV-LEV 60
           R   + ++   ++  +G +           +   P   P            G  +     
Sbjct: 9   RRPVFTLVSMILVLILGAVSLF-----NIPMKLIPDINPPV----------GVVVTSYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    +   S L        + ++  N I L F+ S   +++ + V   + 
Sbjct: 54  AGPKEVLEKVTKPLEANLSTLPGLKSITSTSQEGSNLILLEFSWSTSIDDVQNDVLQRID 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  D  K   +     +  I+       +     ++Q   +  Q   ++   E  
Sbjct: 114 Q--TALPDDVNKPRFLKFDPSQFPIIQLTLTSKKGNEELLKQ---LADQLRAELTKVEGV 168

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +   +    D  +L+    +   ++      + S               G  
Sbjct: 169 ASVNVSGTLTKNVRVLLDQEKLKTYKLSQQDIANFISANDISLP-------------GET 215

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +++DK   +       +      T K +V       G +   +   D    P       
Sbjct: 216 VVIDDKQLTT----RIISTIDSVDTLKQLVVTVNPLNGEKVRLQDIADIAIVPEKEDTIT 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           R    P +  ++       +   +      L  +L           V          +  
Sbjct: 272 RTNEKPSVLLSVLQKADANTAEVSKAFQKRLNELLDTKKFSAVHADVLFDQGDFIQRTIQ 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  +     ++VLF+ +   K  L+   +I  +VI+T  L+     TL + ++ G+
Sbjct: 332 NIFQSLVLGGVFAMLVLFLFLRSAKSPLIIGIAIPYSVIVTFVLMYFADFTLNMMTLGGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            LGIG+ VD++I+V E I       +    +   G     + I  S +T +   V + F 
Sbjct: 392 ALGIGMLVDNSIVVIENIYRHLSMGKDPKQAARDGVKEVGAAITASTLTTVAVFVPVVFI 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
               G     FA+T+  S+L S+F A+++V  +   ++   ++              +  
Sbjct: 452 TGLIGDLFTEFALTISFSLLASLFVALTVVPMLASRWLKPPRENIEEKRQSSRMLVGLDK 511

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +           V      +     +            +G   + V       L     
Sbjct: 512 MVRWSLRHRIIVLVIAIGTLAFGLFGVTKVGMQFLPNTDEGFFSIRVNLANGSALRETEK 571

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            + +++      +  D   + +   Q Q     +Q+ V E+  K         ++ +   
Sbjct: 572 VVSAIEDELKKVKEIDAYVSLIGSTQEQAFRGTSQSNVAEIYVKMKDLDERDRSVFDVVD 631

Query: 657 VGPKISRELIRKG 669
                  +  +K 
Sbjct: 632 DIKNDMEQAAKKA 644



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 102/241 (42%), Gaps = 10/241 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++  + IG    Q    ++ + V+   +  ++     +  +V K+I ++      +    
Sbjct: 785  DIADITIGKSPVQIHRIDEQYAVQFTLKYKNTTNLGEMSAIVDKEIAKLHLPEETEIVFG 844

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL-ILDITKTLGFFALF 714
               ++    +   ++   ++   + + +  +F+   +    + T+ ++ I   LG  A  
Sbjct: 845  GDRELLESALGDLLLAFALAITFVYLVMAAQFESLKYPFVIMFTVPLMAIGVALGLMA-T 903

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                ++ A+  V+ L G  VN+ +V+ D +    ++    ++  D I  S+   +   + 
Sbjct: 904  KTPVSVMAIIGVIVLAGIVVNNAIVIVDYIN---QMKEKGLASYDAIVTSVKLRVRPILM 960

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++   + +LP+A     G  +    AI +  G++ +   ++F+  P++  ++D   +  
Sbjct: 961  TALTTILGLLPLAFGIGEGAEMNQPLAITVIGGLISSTFLTLFVI-PVVYSLFDKETRKM 1019

Query: 832  R 832
            +
Sbjct: 1020 K 1020



 Score = 84.7 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 68/218 (31%), Gaps = 11/218 (5%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-A 677
           V  +     +       + + + +      +   +         +  I+     +++   
Sbjct: 283 VLQKADANTAEVSKAFQKRLNELLDTKKFSAVHADVLFDQGDFIQRTIQNIFQSLVLGGV 342

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            AML+           L     +   +  T           N+  +  +   IG  V++ 
Sbjct: 343 FAMLVLFLFLRSAKSPLIIGIAIPYSVIVTFVLMYFADFTLNMMTLGGLALGIGMLVDNS 402

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVI 794
           +VV + +    +  +     +      + E       +++      +P+       G + 
Sbjct: 403 IVVIENI---YRHLSMGKDPKQAARDGVKEVGAAITASTLTTVAVFVPVVFITGLIGDLF 459

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             FA+ ++F    +  +S+F+A  ++  +     K  R
Sbjct: 460 TEFALTISF----SLLASLFVALTVVPMLASRWLKPPR 493



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 55/527 (10%), Positives = 146/527 (27%), Gaps = 19/527 (3%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M        +  ++  IG L      + +  +   P+              G   + + +
Sbjct: 512  MVRWSLRHRIIVLVIAIGTLAFGLFGVTKVGMQFLPNTD-----------EGFFSIRVNL 560

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                 +    +     +   LKK       +  I +    +F  +         V +   
Sbjct: 561  ANGSALRET-EKVVSAIEDELKKVKEIDAYVSLIGSTQEQAFRGTSQSNVAEIYVKMKDL 619

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                +   D   ++     +       +      + S A      ++    D        
Sbjct: 620  DERDRSVFDVVDDIKNDMEQAAKKANQTAEVSINLQSTAGSTPNTLVFSVKDTNEARLEK 679

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   R+       +  + + + +         +                   + G  
Sbjct: 680  AVEKIYDRLSKLDEVNELTTDISETVDEIQIKVDREKALAQGFTPAQVATMVNDMTRGVT 739

Query: 241  YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                   E +  ++N         +   +  +   +            +I    + V   
Sbjct: 740  ATRMLDKESNLYNVNVEYDESVKNSVDNLKKLLIKKQDGTFIPLGDIADITIGKSPVQIH 799

Query: 301  RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            R+     +   +        G  +      +A +     LP +  IV   +      +  
Sbjct: 800  RIDEQYAVQFTLKYKNTTNLGEMSAIVDKEIAKL----HLPEETEIVFGGDRELLESALG 855

Query: 361  IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  A+    V +V+       K+  V  F++ L  I     L      +++ +I G+
Sbjct: 856  DLLLAFALAITFVYLVMAAQFESLKYPFVIMFTVPLMAIGVALGLMATKTPVSVMAIIGV 915

Query: 421  VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            ++  G+ V++ I++ + I +   K  + + ++          I  + +T ++  + L F 
Sbjct: 916  IVLAGIVVNNAIVIVDYINQMKEKGLASYDAIVTSVKLRVRPILMTALTTILGLLPLAFG 975

Query: 480  --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
               G    +  AIT+   ++ S F  + ++  +     +  +     
Sbjct: 976  IGEGAEMNQPLAITVIGGLISSTFLTLFVIPVVYSLFDKETRKMKHS 1022


>gi|332532607|ref|ZP_08408484.1| AcrAB-TolC-like efflux pump [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038028|gb|EGI74476.1| AcrAB-TolC-like efflux pump [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 1050

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/703 (11%), Positives = 183/703 (26%), Gaps = 59/703 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G +        Q  +  +P  +P   +                +
Sbjct: 9   QRPIFAAMLSLVILIAGGISLF-----QLPVSEYPEVVPPTVVVT-------------AN 50

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L   +   E +     +   +    +T++FA     +    +V 
Sbjct: 51  YPGANPTVIAQTVATPLEQEINGTENMLYMFSQGTSDGRMTLTVTFALGTDLDRAQVQVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  + ++  +V         ++      +        S        D+I  
Sbjct: 111 NRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPEKTHDTAYLSNYADLNIKDEIAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P  L     T   +       N        G + + + 
Sbjct: 171 LPGVGDIRMFGAGKYSMRVWLNPDALAARELTATDVVTALRSQNQQVAAGSLGAQPISND 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q L+  K  ++ I              +    I       +         +      
Sbjct: 231 SQFQILLNVKGRLNSIE-------------EFEQVIIKVGDEGQLTRLSDIARVDLGQDT 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +      A L           +         
Sbjct: 278 YALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLSKDFPTGVEYDIVYDPTVFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           GS      T      LV+IV+ + +   +  ++   ++ +++I T A++  LG ++   S
Sbjct: 338 GSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +     K  S   +  +  S     I    +      + 
Sbjct: 398 LFGLVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVR---------------AMMIFIIRYK 518
             F     G   + FA+T+ +S +IS F ++++                 A    + +  
Sbjct: 458 TAFITGLSGQFYKQFALTITISTIISAFNSLTLSPALAALLLKSHDAKPDAFTRLLNKLF 517

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                                +     R   V +    ++    +     +  G   +  
Sbjct: 518 GRWLFKPFNRVFNRGAKGYEKLVQKLIRMTVVVMVAYIALVGGTIKLFDTVPGGFIPQQD 577

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
            Q  V   +  D S +    + L           G  + +                  + 
Sbjct: 578 KQYLVAIAQLPDASSLDRTEDVLAQMQQIALEVPGVAHTVAFPGLSVNGFTNSPNSGIVF 637

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               +        Q+   +  +     + K    +  + +A+ 
Sbjct: 638 TPLESFDKRTDPSQSAMAIAAQ-----LNKRFAAIDEAFVAVF 675



 Score = 44.7 bits (103), Expect = 0.074,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L      G + N+    A++ L+  +  + +++ +  +   
Sbjct: 903  SLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFAKD-- 960

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
              + + +S  + I ++    L   + TS+A    V+P+ +    G  +  +    +  G+
Sbjct: 961  -RHDSGLSHLEAILEACRMRLRPILMTSIAFTAGVVPLVLATGAGAEMRHAMGNAVFSGM 1019

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +      +       + + + + K
Sbjct: 1020 IGVTVFGLLFTPVFYMLVTNKKEK 1043



 Score = 42.4 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  T       G+  N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---IAVPISLIGTFAVMQWLGVSINTLSLFGLVLAIGIVVDDAIVVVENVERNI---E 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S  +    +++E  G  +  ++      +P A      G     FA+ +    +++A
Sbjct: 425 KGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITISTIISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 FNS 487


>gi|294775262|ref|ZP_06740785.1| putative ATP synthase F0, A subunit [Bacteroides vulgatus PC510]
 gi|294450839|gb|EFG19316.1| putative ATP synthase F0, A subunit [Bacteroides vulgatus PC510]
          Length = 1049

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/519 (11%), Positives = 154/519 (29%), Gaps = 33/519 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I C+G+L  L        + +FP  +P +                   
Sbjct: 7   KRPILSGVISVIIVCLGVLSIL-----TLPITQFPDIVPPSVT---------VTARYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D ++  +    +   + +                +T + F      +  A  V   + 
Sbjct: 53  SADVMSKTVATPLERAINGVPGMTYMTTVCTNDGMSLTTIYFKVGTDPDVAAVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  ++T  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVITEKEVNSMLMYLNIMSTDSAHTEKFVYNFADINILRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P+RL         ++      N        G+   +     Q
Sbjct: 173 GLVEIMGSRDYAMRVWLNPNRLAAYNMVPQDVTEAIRNQNIEAAPGKTGISSDKLPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++                      +    +                 I          
Sbjct: 233 YVLQ-------------YTGKFSTAEEYGEIVLKALPDGSLLRLKDVATIEFDSEDYNMT 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSD 359
            +         +   +   +    I+      A ++ +   P     +          S 
Sbjct: 280 SMTDGRPSASIMIKQRPGSNAREVIQNIKTKMAEIKESSFAPGMDYNISYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV IV+++ +   +  L+   ++ ++++ T   + +LG ++ + ++  
Sbjct: 340 QSVLKTLLEAFILVFIVVYIFLQDFRSTLIPAIAVPVSLVGTFFFMEMLGFSINMLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IG+ VD+ I+V E +  +    + S + +     +     I    +      V + 
Sbjct: 400 LVLAIGIVVDNAIVVVEAVHVKMHHEKLSPYKASVAAINEIGGAIIAITLVMSAVFVPVG 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           F  G      R F++T+ ++I+IS   A+++  A+   +
Sbjct: 460 FMQGTVGIFYRQFSLTLAVAIVISGINALTLSPALCALL 498



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 87/233 (37%), Gaps = 6/233 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +S      S  +     + +++ +           +   + +            N   
Sbjct: 270 EFDSEDYNMTSMTDGRPSASIMIKQRPGSNAREVIQNIKTKMAEIKESSFAPGMDYNISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I+  +  ++ + I + I ++I    +   L     + + +  T  F  + G
Sbjct: 330 DVSRFLDASIQSVLKTLLEAFILVFIVVYIFLQDFRSTLIPAIAVPVSLVGTFFFMEMLG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+  + A++  IG  V++ +VV + +   +K++   +S       +INE  G  +  
Sbjct: 390 FSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHHEKLSPYKASVAAINEIGGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++      +P+    G+V      F++ +A  IV++  +++ ++  +   +  
Sbjct: 448 TLVMSAVFVPVGFMQGTVGIFYRQFSLTLAVAIVISGINALTLSPALCALLLK 500



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 88/288 (30%), Gaps = 14/288 (4%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
            + G   S  F             +              A       V  SN  ++     
Sbjct: 753  YIGSFYSSNFIRFGQMYKVMLQASPEYRMNPEDLYKFYAKNKDGNMVPYSNFMTMDRIFG 812

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              Q           +  +P + V+   V+E V++   E +P         V  +      
Sbjct: 813  PNQITRYNMFTSALITGEPAEGVSSGEVIEAVEQIAKETLPRGYDIEWSGVTREEKD--- 869

Query: 667  RKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
              G   +I     + +Y+ +             I +L   I  +  F  L G+E N+ A 
Sbjct: 870  SGGQTVLIFGICLLFVYLLLAAQYESLLLPFPVILSLPAGIFGSYFFLQLAGLENNIYAQ 929

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFIS 782
             A++ LIG    + +++     +    Y    +S  D   +     L   + TS A    
Sbjct: 930  VALVMLIGLLGKNAILIV----EMANQYRKQGMSIFDAAVRGSVSRLRPILMTSFAFICG 985

Query: 783  VLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++P+    G   +   S     A G+ +     IF+   + L    W 
Sbjct: 986  LIPLVMASGAGALGNRSIGTAAAGGMFIGTFVGIFLVPGLYLVFESWS 1033


>gi|261886159|ref|ZP_06010198.1| transmembrane efflux protein [Campylobacter fetus subsp. venerealis
           str. Azul-94]
          Length = 1032

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/573 (12%), Positives = 164/573 (28%), Gaps = 41/573 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +      L  S ++ +P   P               ++++ + 
Sbjct: 9   RPVFACVLSIIIVIAGYI-----GLKSSPIEEYPQLTPP-------------QIMVQANY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L + +        +   S       +++ F      +     V+ 
Sbjct: 51  SGADAQTIADTIAAPLENAINGVQDMIYMQSTSSSAGTMSLSVYFKIGTNPQTATVNVSN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L  + K+  +         + +             E S  I     D I   
Sbjct: 111 RVTPALSLLPEEVKRVGVTVRERSSSILNVLSFYDPSGKMSDTEISNYININVADAIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +     P  L++   TT  +       N+       G +  + S+
Sbjct: 171 PGVGDAVVIGNKDYSMRVWIKPDLLKKYSLTTTDVINSIKEQNSQYATGKIGEQPTQTSN 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y ++ +  +                 +    I                 +       
Sbjct: 231 PYVYAIKPEGRL-------------KNVSEFENIIIKANNKGNIIKLKDVATVELGAQNY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +    +       ++  +   T +        LRA        IV          
Sbjct: 278 TFAGRINGATMIPMFVFLQSGANALNTADAIVKRVDELRASFPGDLTYIVGYDTTEFVKV 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV++M +   +  ++   ++ ++++     L  +G ++ L ++
Sbjct: 338 SIDEVIKTFIEAMILVVIVMYMFLGNVRATIIPMLAVPVSILGAFGGLYAMGFSINLITL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIAT 474
             ++L IG+ VD  I+V E +        +      ++          I    + + +  
Sbjct: 398 FALILAIGIVVDDAIIVIENVERILHGEPNLTVKEATIKAMSEIVAPVISIVLVLSAVFI 457

Query: 475 VVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V F  G  G   R FA+T+ +S  IS   A+++  A+   I+R K+     +      F
Sbjct: 458 PVSFMEGFVGVIQRQFALTLVVSGCISGLVALTLTPALCAMILRKKENPPFWLVRKFNEF 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
                       A+     I  L  +  I  + 
Sbjct: 518 FDFSTKIFTAGVAKILKHVIMSLICVGIIIFMM 550



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 80/212 (37%), Gaps = 15/212 (7%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A  + ++ ++      +      +T         E+I+  I  +I+  I M +++ 
Sbjct: 303 NTADAIVKRVDELRASFPGDLTYIVGYDTTEFVKVSIDEVIKTFIEAMILVVIVMYMFLG 362

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +  +  + + I    G     G   NL  + A++  IG  V+D ++V + + 
Sbjct: 363 ---NVRATIIPMLAVPVSILGAFGGLYAMGFSINLITLFALILAIGIVVDDAIIVIENV- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-------WGGSVIGSFA 798
           + +     +++ ++   K+++E +   +    +  + +  + +       + G +   FA
Sbjct: 419 ERILHGEPNLTVKEATIKAMSEIVAPVI----SIVLVLSAVFIPVSFMEGFVGVIQRQFA 474

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           + +     ++   ++ +   +   I   +   
Sbjct: 475 LTLVVSGCISGLVALTLTPALCAMILRKKENP 506



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/371 (12%), Positives = 107/371 (28%), Gaps = 11/371 (2%)

Query: 461  STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              I   +IT           G    +  A    +    +   A+++VR  +        +
Sbjct: 668  PPIMGLSITGGFELFAQNTEGKNYSQIEADMQTVVAKANAHPALNMVRTTLDTNFPQYDL 727

Query: 521  KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
                         I D           + V    +        + +              
Sbjct: 728  TLDKEKIKMMGINISDVFNTLSSTIGQYYVNDFNMLGKTFKVNIRSMSEYRDSPEDLRSL 787

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                 +  +       +L+     D   +        ++        S    + +E + K
Sbjct: 788  YVRSQDGKMVPLDSVVSLKRSLGPDNVDRFNAFPAAKIMGEPKPGYTSGDAIKAIEQIIK 847

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
            +                          KG    +   I + + +  ++ +W   L  +T 
Sbjct: 848  EELPTGYDIGWSG----SAYQEVASTGKGAQAFVFGMIFVFLILAAQYERWLMPLAVVTA 903

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +   +  +L F    G+  ++     +L LIG +  + +++ +     M+ +    S ++
Sbjct: 904  VPFSVFGSLLFTWTRGLSNDVYFQIGLLLLIGLAAKNAILIVEFA---MQEHLAGKSIKE 960

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +        V TS+A  + VLPM V    G +   +    +  G++ A++ +IF  
Sbjct: 961  AAINAARMRFRPIVMTSLAFTLGVLPMVVATGAGAASRHALGTGVIGGMIAASTIAIFFV 1020

Query: 817  APILLFIYDWR 827
                  +  + 
Sbjct: 1021 PLFFYILESFN 1031


>gi|45658380|ref|YP_002466.1| preprotein translocase subunit SecD [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|294827801|ref|NP_711323.2| preprotein translocase subunit SecD [Leptospira interrogans serovar
           Lai str. 56601]
 gi|45601623|gb|AAS71103.1| SecD [Leptospira interrogans serovar Copenhageni str. Fiocruz
           L1-130]
 gi|293385646|gb|AAN48341.2| preprotein translocase subunit SecD [Leptospira interrogans serovar
           Lai str. 56601]
          Length = 642

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 136/541 (25%), Positives = 252/541 (46%), Gaps = 34/541 (6%)

Query: 19  LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78
           L++   N L  ++++ + +      I LGLDL+GG  + ++ D +D+ +   + Y  E+ 
Sbjct: 103 LILEAKNKLRPTLVEEWITKGRPLTIKLGLDLQGGMRVAMKGDFEDYASKLRESYIKEIE 162

Query: 79  SFLK-----------------KEGIGVFSMRQIQNKITLSFADSR----------FKENI 111
           +  K                 +            ++  L    ++               
Sbjct: 163 NLNKTVTDPSADEKEKKKAKDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEP 222

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI--IRQ 169
             ++      +   L      + ++   +   ++       +    + +  +  I     
Sbjct: 223 QVRIQKDQDSIEVSLPGVTNSSQILEIIQNTETVEYRLEEPENSAGNGLTYASIIQQEEN 282

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
           R+ ++   E T      + I  +L      +   + L    +              +  G
Sbjct: 283 RLLELKRREETDIVQYQNIIKQKLGK----AEQDKFLQGLEEKYKIPRDRYRVFAYWARG 338

Query: 230 VRFLRD-SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                        ++E  + + G  +  A  +F+  +   +V  +    GA +FFE+T  
Sbjct: 339 NHQNSTLLPRKFVVLEKAIALDGRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQ 398

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           N G+ LA+V   +V++AP I  AI  G AQI G+FT E A  LA ++  G+LPI L ++E
Sbjct: 399 NKGRNLAIVWGDKVVSAPTIRSAIAGGVAQIDGSFTKEEAVDLANVISEGALPIPLRVLE 458

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
            R +G  LG +SI  G  A++ G VL++ +MI++Y   GLVA+ ++F N+++  ALLSL+
Sbjct: 459 MRFIGPTLGIESIEVGMKAVLIGFVLVMFYMILIYRLSGLVANAALFANIVILSALLSLM 518

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           G TLTLP  AGI+L +G+AVD+N+++ ERI+EE R  +S   ++  GF  A+ TI DSN+
Sbjct: 519 GFTLTLPGFAGIILTVGMAVDANVIIYERIKEELRAGKSATVAVAQGFDNAFWTIIDSNV 578

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LI+ +++   G G ++GFAIT+   I+ S+FT++ + R +M  ++    ++ + +   
Sbjct: 579 TTLISGILMIRLGNGPIKGFAITLCWGIITSLFTSLFLSRLVMDLLVNRLGVQKLQLGFK 638

Query: 529 S 529
            
Sbjct: 639 K 639



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 109/311 (35%), Gaps = 6/311 (1%)

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
           K     D   +  ++   +      +  +F  +  +I      +        N    +  
Sbjct: 321 KYKIPRDRYRVFAYWARGNHQNSTLLPRKFVVLEKAIALDGRDMRDARPSFENNSFGYIV 380

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              L             ++   +L I               +       D          
Sbjct: 381 SFTLTSSGAEKFFEITSQNKGRNLAIVWGDKVVSAPTIRSAIAGGVAQIDGSFTKEEAVD 440

Query: 638 VKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           +   I+E      ++      +GP +  E I  G+  V+I  + ++ Y+ + ++    L 
Sbjct: 441 LANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLIGFVLVMFYMILIYRLS-GLV 499

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A   L  +I       +L G    L   A ++  +G +V+  V++Y+R+++ ++      
Sbjct: 500 ANAALFANIVILSALLSLMGFTLTLPGFAGIILTVGMAVDANVIIYERIKEELRA---GK 556

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           S    + +  +      + +++   IS + M   G   I  FAI + +GI+ +  +S+F+
Sbjct: 557 SATVAVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAITLCWGIITSLFTSLFL 616

Query: 816 AAPILLFIYDW 826
           +  ++  + + 
Sbjct: 617 SRLVMDLLVNR 627


>gi|212692098|ref|ZP_03300226.1| hypothetical protein BACDOR_01593 [Bacteroides dorei DSM 17855]
 gi|212665490|gb|EEB26062.1| hypothetical protein BACDOR_01593 [Bacteroides dorei DSM 17855]
          Length = 1049

 Score =  163 bits (412), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/519 (11%), Positives = 154/519 (29%), Gaps = 33/519 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I C+G+L  L        + +FP  +P +                   
Sbjct: 7   KRPILSGVISVIIVCLGVLSIL-----TLPITQFPDIVPPSVT---------VTARYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D ++  +    +   + +                +T + F      +  A  V   + 
Sbjct: 53  SADVMSKTVATPLERAINGVPGMTYMTTVCTNDGMSLTTIYFKVGTDPDVAAVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  ++T  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVITEKEVNSMLMYLNIMSTDSAHTEKFVYNFADINILRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P+RL         ++      N        G+   +     Q
Sbjct: 173 GLVEIMGSRDYAMRVWLNPNRLAAYNMVPQDVTEAIRNQNIEAAPGKTGISSDKLPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++                      +    +                 I          
Sbjct: 233 YVLQ-------------YTGKFSTAEEYGEIVLKALPDGSLLRLKDVATIEFDSEDYNMT 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSD 359
            +         +   +   +    I+      A ++ +   P     +          S 
Sbjct: 280 SMTDGRPSASIMIKQRPGSNAREVIQNIKTKMAEIKESSFAPGMDYNISYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV IV+++ +   +  L+   ++ ++++ T   + +LG ++ + ++  
Sbjct: 340 QSVLKTLLEAFILVFIVVYIFLQDFRSTLIPAIAVPVSLVGTFFFMEMLGFSINMLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IG+ VD+ I+V E +  +    + S + +     +     I    +      V + 
Sbjct: 400 LVLAIGIVVDNAIVVVEAVHVKMHHEKLSPYKASVAAINEIGGAIIAITLVMSAVFVPVG 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           F  G      R F++T+ ++I+IS   A+++  A+   +
Sbjct: 460 FMQGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALL 498



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 87/233 (37%), Gaps = 6/233 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +S      S  +     + +++ +           +   + +            N   
Sbjct: 270 EFDSEDYNMTSMTDGRPSASIMIKQRPGSNAREVIQNIKTKMAEIKESSFAPGMDYNISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I+  +  ++ + I + I ++I    +   L     + + +  T  F  + G
Sbjct: 330 DVSRFLDASIQSVLKTLLEAFILVFIVVYIFLQDFRSTLIPAIAVPVSLVGTFFFMEMLG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+  + A++  IG  V++ +VV + +   +K++   +S       +INE  G  +  
Sbjct: 390 FSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHHEKLSPYKASVAAINEIGGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++      +P+    G+V      F++ +A  IV++  +++ ++  +   +  
Sbjct: 448 TLVMSAVFVPVGFMQGTVGIFYRQFSLTLAVAIVISGVNALTLSPALCALLLK 500



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 47/288 (16%), Positives = 86/288 (29%), Gaps = 14/288 (4%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
            + G   S  F             +              A       V  SN  ++     
Sbjct: 753  YIGSFYSSNFIRFGQMYKVMLQASPEYRMNPEDLYKFYAKNKDGNMVPYSNFMTMDRIFG 812

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              Q           +  +P + V+   V+E V++     +P         V  +      
Sbjct: 813  PNQITRYNMFTSALITGEPAEGVSSGEVIEAVEQIAKGTLPRGYDIEWSGVTREEKD--- 869

Query: 667  RKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
              G    I     + +Y+ +             I +L   I  +  F  L G+E N+ A 
Sbjct: 870  SGGQTVFIFGICLLFVYLLLAAQYESLLLPFPVILSLPAGIFGSYFFLQLAGLENNIYAQ 929

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFIS 782
             A++ LIG    + +++     +    Y    +S  D   +     L   + TS A    
Sbjct: 930  VALVMLIGLLGKNAILIV----EMANQYRKQGMSIFDAAVRGSVSRLRPILMTSFAFICG 985

Query: 783  VLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++P+    G   +   S     A G+ +     IF+   + L    W 
Sbjct: 986  LIPLVMASGAGALGNRSIGTAAAGGMFIGTFVGIFLVPGLYLIFESWS 1033


>gi|167764329|ref|ZP_02436454.1| hypothetical protein BACSTE_02713 [Bacteroides stercoris ATCC
           43183]
 gi|167697734|gb|EDS14313.1| hypothetical protein BACSTE_02713 [Bacteroides stercoris ATCC
           43183]
          Length = 1046

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/677 (11%), Positives = 190/677 (28%), Gaps = 47/677 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENVLNSVSDLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSELPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP +L     +   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPYKLEAYNLSIETISSIIGAENKNIPGGNFDIGNETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E++ + +                            +      I   +       
Sbjct: 232 EFDDSRELADVVVGTY--------------------NGATVYLRDVARIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +              L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISRKVQEALPRLQKNLPSDVKLGVIVDTSENILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAISGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVVASTLTMIAVFFPLTMVT 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFF 532
           G +    +     M   + +S  +A+++   +   +                    +   
Sbjct: 452 GMSGVLFKQLGWMMCAIMFVSTVSALTLTPMLCSQLLRLQRKQSKMFRIFFGPIEHTLDG 511

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-KGGIQLGVLANRPVDL 591
           L      +     R   V +        + L     +       +   ++ V    P+  
Sbjct: 512 LDNWYARMLNWAVRHRMVVLVGCVIFFILSLFCAKTIGTEFFPAQDNARIAVQLELPIGT 571

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
               +   S ++ +   Q + G          Q         + +     I+  + L   
Sbjct: 572 RKEVAQEVSQKLTNQWLQKYKGVMKICNYTVGQADSDNTWASMQDNGSHIISFNISLVDP 631

Query: 652 QNTEIVGPKISRELIRK 668
            + ++    +  E+   
Sbjct: 632 ADRDVTLETVCEEMRED 648



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 94/249 (37%), Gaps = 7/249 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V   +++++       N   +   +V  +    +SV  +R ++    ++ + +P 
Sbjct: 252 VYLRDVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISRKVQEALPRLQKNLPS 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                  +   +     I      V+ + + ++I +++   +W   L    T+ L +  +
Sbjct: 312 DVKLGVIVDTSENILNTIDSLTETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIAS 371

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             + A+ G   N+ +++++   IG  V+D +VV + +             +       NE
Sbjct: 372 FIYLAISGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNE 428

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V +++       P+ +     G +       M   + V+  S++ +   +   + 
Sbjct: 429 VAISVVASTLTMIAVFFPLTMVTGMSGVLFKQLGWMMCAIMFVSTVSALTLTPMLCSQLL 488

Query: 825 DWRAKNARI 833
             + K +++
Sbjct: 489 RLQRKQSKM 497



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 77/242 (31%), Gaps = 8/242 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              +L  +            ++  +V +      +     V            P       
Sbjct: 792  IKDLGKVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNAIIDRMEKPSDITIQV 851

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                          G +GV+I  I + I +  +F+   +    I ++   ++  L    +
Sbjct: 852  AGSFEDQQDSFRDLGTLGVLI-IILVFIVMAAQFESLTYPFILILSVPFAMSGVLMALFI 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++ ++   + LIG  V + +V+ D     +       S  + +  +    L   +
Sbjct: 911  TNTTLSVMSLLGSIMLIGIVVKNGIVLID---YTILCRERGQSVLNAVVTAGKSRLRPVL 967

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+M   + ++PMA+    G  +    AI +  G+ V+   ++     +         K 
Sbjct: 968  MTTMTTILGMIPMAISSGQGSEMWSPMAIAVIGGLAVSTILTLIYVPTMYCIFGGVGIKR 1027

Query: 831  AR 832
             R
Sbjct: 1028 QR 1029


>gi|91762681|ref|ZP_01264646.1| AcrB/AcrD/AcrF family protein (Acriflavin resistance) [Candidatus
           Pelagibacter ubique HTCC1002]
 gi|91718483|gb|EAS85133.1| AcrB/AcrD/AcrF family protein (Acriflavin resistance) [Candidatus
           Pelagibacter ubique HTCC1002]
          Length = 1040

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/682 (10%), Positives = 197/682 (28%), Gaps = 37/682 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  ++   G+         Q  +   P  +    + + +D         +  
Sbjct: 9   RRPVVAWVMSLILIVFGIF-----VFSQLPVRELPEGLQPPVVQVKVD--------YKSA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  +    +++   ++       +     + I + F      +N A+ +   +  
Sbjct: 56  SAPIIDQEVTQVIEDVIGGVEGIKNINSTSENGSSSINVEFNPDIDLDNAANDIRERVAR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  +     ++  +    + +    +        +E    + R  +DQ    ++  
Sbjct: 116 VVDRLPSEAAAPQILKQSAGFSTTMWLAVSSATWSD--LELGDYVERYLVDQFSSVKNVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    DP +L     T  ++       N S                   
Sbjct: 174 TISTGGLRDLSVRIWIDPIKLAANNLTIQEVEGAIRKENVSLPAGTLEAT---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++  + +   + N       P        +   ++    F  V+  N+ K  +      
Sbjct: 224 NIDLILNLDKSYNNIEKLKTLPIKKNQNSVVRLSDIANVEFGPVSEKNLFKAQSKDALD- 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         K+  S     +        ++          V          +   
Sbjct: 283 ----LNTVGIGIYAKSGASTVELSKEISKKIEEVKKTLPDDLNIEVAFNRATYVGTAIDE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+I++++ +   K  +V   ++ +++I +   L L G ++ +  +   +
Sbjct: 339 VYKTLIIAFILVVIIIYLFLGNIKAVIVPAVALPVSLIASFLGLYLFGLSINIFVLLSFI 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+  D ++++ + I       +S   +   G  +    I  + +  +   + L F  
Sbjct: 399 LAIGIITDDSVIMTDAIYRRIENGESPLIAAYKGSKQISFAIIATTLILVAVFIPLIFID 458

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSRFFLI 534
              G   R  AI + +S+++S F A+++   +    ++ +  ++            F   
Sbjct: 459 GIAGTLFRETAIALSVSVVVSSFVALTLSPMLASKFLKKEPKQNFIVTKFDKFFKSFLKF 518

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            +     ++  +   +   +   I S  L              G+ L +           
Sbjct: 519 YEETLGYWLNKKKIIISFIVFTIIVSGVLFHFTKKELLPLEDRGVYLVLGFTDEGSSFEY 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                      +       +  +   +   PG    +      +   + +        + 
Sbjct: 579 TEKRAEDVEKRLIPLLQAEDSPYKRFIMRVPGFGSNKNSFNSFIIIALLDEWAERDKSSQ 638

Query: 655 EIVGPKISRELIRKGIVGVIIS 676
            I+   I + +     V   IS
Sbjct: 639 TIMREAIGKIVTVPETVAFPIS 660



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/253 (9%), Positives = 78/253 (30%), Gaps = 6/253 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V  +   ++     + ++L                 +  +           + + +++ 
Sbjct: 253 VVRLSDIANVEFGPVSEKNLFKAQSKDALDLNTVGIGIYAKSGASTVELSKEISKKIEEV 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +     I+        +   +       +I   + ++I           +     L 
Sbjct: 313 KKTLPDDLNIEVAFNRATYVGTAIDEVYKTLIIAFILVVIIIYLFLGNIKAVIVPAVALP 372

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  +     LFG+  N+  + + +  IG   +D V++ D +    +      S     
Sbjct: 373 VSLIASFLGLYLFGLSINIFVLLSFILAIGIITDDSVIMTDAI---YRRIENGESPLIAA 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            K   +     + T++      +P+       G++    AI ++  +VV++  ++ ++  
Sbjct: 430 YKGSKQISFAIIATTLILVAVFIPLIFIDGIAGTLFRETAIALSVSVVVSSFVALTLSPM 489

Query: 819 ILLFIYDWRAKNA 831
           +         K  
Sbjct: 490 LASKFLKKEPKQN 502



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 63/167 (37%), Gaps = 10/167 (5%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             +   ++ +   + +   F  +      + T+ L +   L F        N+ +  A++ 
Sbjct: 864  FIIFGLAFLTAYLVMAATFNSFIHPFIIMLTVPLALFGGLVFILFLNSSINIFSQIALVI 923

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG S  + +++ D      +L T   +    + ++        + TS++  I+++P+ +
Sbjct: 924  LIGISTKNSILIVD---YANQLRTAGKNIETSVKEACQLRFRPIMMTSISTMIAMMPLVI 980

Query: 789  WGGSVIGS------FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                              +  G++++   ++++   + L +     +
Sbjct: 981  GNIGPGAGEASRLAVGATILGGMIISTFFTLYVTPTMYLVLAKNTKR 1027


>gi|189461130|ref|ZP_03009915.1| hypothetical protein BACCOP_01777 [Bacteroides coprocola DSM 17136]
 gi|265753899|ref|ZP_06089254.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|189432220|gb|EDV01205.1| hypothetical protein BACCOP_01777 [Bacteroides coprocola DSM 17136]
 gi|263235613|gb|EEZ21137.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1037

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 92/696 (13%), Positives = 210/696 (30%), Gaps = 52/696 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL--VLEV 60
              +  ++  +I  +GL+           ++++P   P              ++      
Sbjct: 9   RPVFSGVISVVIVLMGLIAI-----KVLPVEQYPDIAPPT-----------VNVFCTYPG 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFL 119
              + V   + +  +E  + ++       +        I + F      +  A  V   +
Sbjct: 53  ANAETVQKAVIVPLEEAINGVEDMIYMTSTASNTGDASINIYFKQGANADMAAVNVQNRV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            G  S+L  +  K+ + T  ++   ++                +  +      ++     
Sbjct: 113 NGALSQLPAEATKSGVTTEKQQNAELMTFALYSPDDRFDQTFLNNYMKINVEPRVKRIGG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +          +     P ++         +S      N       FG         N
Sbjct: 173 VGKAQLFGS-NYSMRLWLKPDKMAGYGLIPDDISAVLARQNIEAATGSFG---QNSDGAN 228

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           +Y ++ +  +S                +    +     G          +I         
Sbjct: 229 EYTMKYRGRLS-------------TAEEFGELVVKSLPGGDVLRLKEVADIELGDEYYNY 275

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +        + + K+  + + TI     +   L          +V          S 
Sbjct: 276 SSEVNGHPAAMMMINQKSGSNASSTINEIHEVLDDLSRDLPEGAEFVVLTDTNKFLNASI 335

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+++ +   K  L+   SIF+++I T A++SL+G ++ L ++  
Sbjct: 336 HSVIRTLIEAILLVIVVVYVFLQDIKSTLIPTISIFVSIIGTFAVMSLIGFSINLLTLFA 395

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IG  VD  I+V E ++ +  +   S   + D       S I  S +  +     + 
Sbjct: 396 LVLAIGTVVDDAIVVVEAVQAKFDEGYQSPVLAADDAMKGVSSAILTSTLIFMAVFFPVG 455

Query: 479 FFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLS 529
             GG +      F ITM +++ IS   A ++  A+   +             +       
Sbjct: 456 MMGGTSGAFYTQFGITMAVAVGISAINAFTLSPALCALLLKPYIDEHGNTKNNFAARFRK 515

Query: 530 RFFLIPDCIAIQFMR------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
            F  + D ++ +++R       R W +  +I  S   + L         I  +    + V
Sbjct: 516 AFNAVFDRLSRRYVRGVLYVIHRRWLLWGTIAVSFGLLVLFVNTTKTGLIPEEDTGTVMV 575

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             N     S+ ++     +I        + E N  V      G   +Q      +     
Sbjct: 576 SMNTKPGTSMAQTGKTLKRINSRLDSIAEIEYNGTVAGFSFSGSGPSQAMSFLTLTDWDE 635

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                 ++ +        + ++    +  +    IA
Sbjct: 636 RKGEGQSVNDVIGRIYAATADIPDATVFAMSPPMIA 671



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 47/362 (12%), Positives = 115/362 (31%), Gaps = 11/362 (3%)

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + T  L+       + F        +      I  V    +F   Y     +  + ++ +
Sbjct: 138 LMTFALYSPDDRFDQTFLNNYMKINVEPRVKRIGGVGKAQLFGSNYSMRLWLKPDKMAGY 197

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            LIPD I+    R        S   +                  +   +L V +    D+
Sbjct: 198 GLIPDDISAVLARQNIEAATGSFGQNSDGANEYTMKYRGRLSTAEEFGELVVKSLPGGDV 257

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             ++   +     +    + +   +    +          +  +  + + + ++      
Sbjct: 258 LRLKEVADIELGDEYYNYSSEVNGHPAAMMMINQKSGSNASSTINEIHEVLDDLSRDLPE 317

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAI-----AMLIYIWIRFKWYFALGAITTLILDITK 706
               +V    ++ L    I  VI + I      +++           L    ++ + I  
Sbjct: 318 GAEFVVLTDTNKFL-NASIHSVIRTLIEAILLVIVVVYVFLQDIKSTLIPTISIFVSIIG 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T    +L G   NL  + A++  IG  V+D +VV + ++          S     D ++ 
Sbjct: 377 TFAVMSLIGFSINLLTLFALVLAIGTVVDDAIVVVEAVQAKFDEGY--QSPVLAADDAMK 434

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
                 + +++       P+ + GG+       F I MA  + ++A ++  ++  +   +
Sbjct: 435 GVSSAILTSTLIFMAVFFPVGMMGGTSGAFYTQFGITMAVAVGISAINAFTLSPALCALL 494

Query: 824 YD 825
             
Sbjct: 495 LK 496



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/414 (8%), Positives = 114/414 (27%), Gaps = 29/414 (7%)

Query: 440  EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
             +  + +    S++    R Y+   D     + A       G G   GF + +       
Sbjct: 631  TDWDERKGEGQSVNDVIGRIYAATADIPDATVFAMSPPMIAGYGMGNGFELYLQDKNAGD 690

Query: 500  MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
            +     +    +  +    ++  +  +  + +      I               +     
Sbjct: 691  ITAFSQVTDRFVEALSGRPEIGEVYSSFAADYPQYWVDIDAAKCEQSGVSPSDVLSTLSG 750

Query: 560  SICLLFTHGLN-----------------YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                 +    N                    +   G+ +         LS      ++  
Sbjct: 751  YFSGEYVSNFNRFSKLYHVTMQAPAEYRMDTESLDGMYVRTSDGSMSPLSHFVRLTKTNG 810

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
              D++  N     +                 + E     +           +        
Sbjct: 811  PSDLTRFNMFNAISISGSPATGYSSGQVLKAIRETADHVLPSGYTYELGGLSREESNT-- 868

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLT 721
                   +   ++  + + + +   ++  F     + ++   +  +  F  LFG+E N+ 
Sbjct: 869  ---TNNAVWIFVLCMVLIYLILCALYESVFIPFAVLLSVPCGLMGSFLFAGLFGLENNIY 925

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
                ++ +IG      +++ +      K  +  ++       +    L   + T ++   
Sbjct: 926  MQTGLIMIIGLLAKTAILLTE---YAGKRRSEGMTLAQAAYSAAKVRLRPILMTVLSMVF 982

Query: 782  SVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             ++P+ +    G +   S A  +  G++V   + +F+   + +     + +  R
Sbjct: 983  GLVPLMMAHGVGANGSRSLATGVIGGMIVGTLALLFLVPSLFITFQYIQERIKR 1036


>gi|150006083|ref|YP_001300827.1| cation/multidrug efflux pump [Bacteroides vulgatus ATCC 8482]
 gi|254883451|ref|ZP_05256161.1| cation/multidrug efflux pump [Bacteroides sp. 4_3_47FAA]
 gi|319641762|ref|ZP_07996443.1| cation/multidrug efflux pump [Bacteroides sp. 3_1_40A]
 gi|149934507|gb|ABR41205.1| cation/multidrug efflux pump [Bacteroides vulgatus ATCC 8482]
 gi|254836244|gb|EET16553.1| cation/multidrug efflux pump [Bacteroides sp. 4_3_47FAA]
 gi|317386596|gb|EFV67494.1| cation/multidrug efflux pump [Bacteroides sp. 3_1_40A]
          Length = 1049

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/519 (11%), Positives = 154/519 (29%), Gaps = 33/519 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I C+G+L  L        + +FP  +P +                   
Sbjct: 7   KRPILSGVISVIIVCLGVLSIL-----TLPITQFPDIVPPSVT---------VTARYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQ 120
             D ++  +    +   + +                +T + F      +  A  V   + 
Sbjct: 53  SADVMSKTVATPLERAINGVPGMTYMTTVCTNDGMSLTTIYFKVGTDPDVAAVNVQNRVT 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +  +  ++T  E    ++                        + ++   +  
Sbjct: 113 TVLDELPEEVIRAGVITEKEVNSMLMYLNIMSTDSAHTEKFVYNFADINILRELKRIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +P+RL         ++      N        G+   +     Q
Sbjct: 173 GLVEIMGSRDYAMRVWLNPNRLAAYNMVPQDVTEAIRNQNIEAAPGKTGISSDKLPQQLQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++                      +    +                 I          
Sbjct: 233 YVLQ-------------YTGKFSTAEEYGEIVLKALPDGSLLRLKDVATIEFDSEDYNMT 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSD 359
            +         +   +   +    I+      A ++ +   P     +          S 
Sbjct: 280 SMTDGRPSASIMIKQRPGSNAREVIQNIKTKMAEIKESSFAPGMDYNISYDVSRFLDASI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV IV+++ +   +  L+   ++ ++++ T   + +LG ++ + ++  
Sbjct: 340 QSVLKTLLEAFILVFIVVYIFLQDFRSTLIPAIAVPVSLVGTFFFMEMLGFSINMLTLFA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +VL IG+ VD+ I+V E +  +    + S + +     +     I    +      V + 
Sbjct: 400 LVLAIGIVVDNAIVVVEAVHVKMHHEKLSPYKASVAAINEIGGAIIAITLVMSAVFVPVG 459

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           F  G      R F++T+ ++I+IS   A+++  A+   +
Sbjct: 460 FMQGTVGIFYRQFSLTLAVAIVISGINALTLSPALCALL 498



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 87/233 (37%), Gaps = 6/233 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +S      S  +     + +++ +           +   + +            N   
Sbjct: 270 EFDSEDYNMTSMTDGRPSASIMIKQRPGSNAREVIQNIKTKMAEIKESSFAPGMDYNISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I+  +  ++ + I + I ++I    +   L     + + +  T  F  + G
Sbjct: 330 DVSRFLDASIQSVLKTLLEAFILVFIVVYIFLQDFRSTLIPAIAVPVSLVGTFFFMEMLG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+  + A++  IG  V++ +VV + +   +K++   +S       +INE  G  +  
Sbjct: 390 FSINMLTLFALVLAIGIVVDNAIVVVEAVH--VKMHHEKLSPYKASVAAINEIGGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++      +P+    G+V      F++ +A  IV++  +++ ++  +   +  
Sbjct: 448 TLVMSAVFVPVGFMQGTVGIFYRQFSLTLAVAIVISGINALTLSPALCALLLK 500



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/288 (16%), Positives = 88/288 (30%), Gaps = 14/288 (4%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
            + G   S  F             +              A       V  SN  ++     
Sbjct: 753  YIGSFYSSNFIRFGQMYKVMLQASPEYRMNPEDLYKFYAKNKDGNMVPYSNFMTMDRIFG 812

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              Q           +  +P + V+   V+E V++   E +P         V  +      
Sbjct: 813  PNQITRYNMFTSALITGEPAEGVSSGEVIEAVEQIAKETLPRGYDIEWSGVTREEKD--- 869

Query: 667  RKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
              G   +I     + +Y+ +             I +L   I  +  F  L G+E N+ A 
Sbjct: 870  SGGQTVLIFGICLLFVYLLLAAQYESLLLPFPVILSLPAGIFGSYFFLQLAGLENNIYAQ 929

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFIS 782
             A++ LIG    + +++     +    Y    +S  D   +     L   + TS A    
Sbjct: 930  VALVMLIGLLGKNAILIV----EMANQYRKQGMSIFDAAVRGSVSRLRPILMTSFAFICG 985

Query: 783  VLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++P+    G   +   S     A G+ +     IF+   + L    W 
Sbjct: 986  LIPLVMASGAGALGNRSIGTAAAGGMFIGTFVGIFLVPGLYLIFESWS 1033


>gi|309778835|ref|ZP_07673606.1| multidrug RND efflux transporter, permease protein MdtB [Ralstonia
           sp. 5_7_47FAA]
 gi|308922359|gb|EFP67985.1| multidrug RND efflux transporter, permease protein MdtB [Ralstonia
           sp. 5_7_47FAA]
          Length = 1044

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 148/550 (26%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATTLLMVAILLSGLVAYRMLPLSALPEVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F  S   +    +V   +   
Sbjct: 56  PDVMTSSITAPLERQFGQMPGLKQMTSSSSGGASVITLQFDLSLSLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +      + +L+   I        +    +  +   ++        
Sbjct: 116 GNLLPNDLPMPPIYSKVNPADAPILT-LAITSNTMPLPKLEDLVDTRIAQKLSQLPGIGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + + S L  L  +   +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRIQANTSALAALGLSIDDIRTAIGTANVNGAKGSFDGPMRASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 I            
Sbjct: 235 LKSAAE--------------------YSKMIVAYKNGAPIRLTDVAQIVDGAENSKLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +  A  L   L+          +          S S  
Sbjct: 275 SNTTPAIILNVQRQPGANVIEVVNRAKALLPQLKETLPGNVEVSLLTDRTTTIRASVSDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFELMLAVALVVMVIFLFLRNVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +      +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYIEEGDPPMEAALKGSKQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ +SILIS   ++++   M   ++++           +      + IA
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLKHIPEAEQSRFYHAAGAFFDNVIA 514

Query: 540 IQFMRARFWG 549
                 ++  
Sbjct: 515 RYGRMLQWVL 524



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
           T   N  +         ++A +      +    + +   + S           + L  Q 
Sbjct: 228 TIDANDQLKSAAEYSKMIVAYKNGAPIRLTDVAQIVDGAENSKLAAWSNTTPAIILNVQR 287

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIAM 680
                   V+   K  + ++           +    +  +          + + ++ + M
Sbjct: 288 QPGANVIEVVNRAKALLPQLKETLPGNVEVSLLTDRTTTIRASVSDVQFELMLAVALVVM 347

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           +I++++R      +     + L +  T G   L G   N   + A+    G+ V+D +V+
Sbjct: 348 VIFLFLR-NVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVM 406

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF 797
            + +    +         +   K   +     +  + +    ++P+   G   G +   F
Sbjct: 407 IENI---ARYIEEGDPPMEAALKGSKQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFREF 463

Query: 798 AIPMAFGIVVAASSSIFIAA 817
           AI +A  I+++A  S+ +  
Sbjct: 464 AITLAVSILISAVVSLTLTP 483



 Score = 42.0 bits (96), Expect = 0.44,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 87/258 (33%), Gaps = 8/258 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +         +         +      ++     S       +     + +      +  
Sbjct: 761  MQLGPQSLYDLHVASSSGQQIPLGAFATVVEQPGSLVVNHQGQFPAATISFNLAPRASLG 820

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              ++ +     EI   +++Q +        R  +   +  ++ + I M I + + ++   
Sbjct: 821  AAVDTINAVEEEIGLPASMQTSFQGAALAFRASLSNQLWLILAAVITMYIVLGVLYESTI 880

Query: 693  ALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                I + +          +L   G +  + A+  ++ LIG    + +++ D   +    
Sbjct: 881  HPVTILSTLPSAG-VGALLSLLVSGKDMGIIAIIGIILLIGIVKKNAIMMIDFALE--AE 937

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                ++ RD I ++        + T+MAA +  LP+ +    G  +     I M  G++V
Sbjct: 938  RDQGMAPRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLV 997

Query: 808  AASSSIFIAAPILLFIYD 825
            +   ++F    I L   +
Sbjct: 998  SQVLTLFTTPVIYLAFDN 1015


>gi|209550138|ref|YP_002282055.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535894|gb|ACI55829.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 1051

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/634 (10%), Positives = 165/634 (26%), Gaps = 43/634 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++  +++   GL            +   P                      +  
Sbjct: 23  RRPILALVFNTLMVVAGLAA-----YVGVEVRELPDVDRPVVT---------VRTTFDGA 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  L    +   + +        +    Q+++TL F+D+      A+ V   +  
Sbjct: 69  SPQTIDQELTKVIEGAVARVSGLKSISSTSSFGQSRVTLEFSDAIDLAVAANDVRDAIGR 128

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +V       +I+       ++     + +  +  + ID++   +   
Sbjct: 129 ITQNLPDEADAPQIVKADSDSSAIMRLAVTSTKLNMD--DLTQLVENEVIDRLASVDGVA 186

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D   L     T   ++                            
Sbjct: 187 DVEEYGDQEKVFRVDVDQGALASRGLTIGDLTKALDNAALDVPAGSLKSNTQDIVVRATA 246

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + S + L                          R        +           
Sbjct: 247 NLQTPADFSKVMLQD------------------------RVRLGDVATVTLGPRDGETAL 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +              L           +   +     G+   
Sbjct: 283 RSNGKPGIGLGIIRQAQSNTLNISTGIKAAVEQLSKTLPEGTTIAITSDDAVFIQGAIHE 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + A +V  V+++ +   +  L+   S+ + +I TLA + ++G ++ + ++  IV
Sbjct: 343 VVLALLLAAVIVTAVIYLFLRDWRATLIPAVSMPVALIGTLAAIYMVGFSINILTLLAIV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  +  T     + L F  
Sbjct: 403 LATGLVVDDAIVVLENIVRRRAEGMGPRAAAVLGTREVFFAVVATTATLAAVFIPLSFLP 462

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F   +  S+ +S   A+++   +   ++    ++           L     
Sbjct: 463 GQVGGLFREFGFVLAFSVGLSSIVALTLCPMLASRMLTKPMIEDHGALGRFGGALARLYK 522

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      V I          L+    +   +  +    + ++       S +    
Sbjct: 523 WALHGCLNAPFVVILFSVIFAGAALIAFSTVKSELTPEEDRSMVMMRLTTPQGSSLEYTR 582

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           + +Q+ + + Q      +               +
Sbjct: 583 DKMQLVEENLQPLVDSGDIRNVFSISGQGGSLNS 616



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 6/233 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L           N        +  Q Q       T +   V++    +   +TI  T  
Sbjct: 272 TLGPRDGETALRSNGKPGIGLGIIRQAQSNTLNISTGIKAAVEQLSKTLPEGTTIAITSD 331

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +    +  ++ + I   +       W   L    ++ + +  TL    + G 
Sbjct: 332 DAVFIQGAIHEVVLALLLAAVIVTAVIYLFLRDWRATLIPAVSMPVALIGTLAAIYMVGF 391

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             N+  + A++   G  V+D +VV + +   ++     +  R        E     V T+
Sbjct: 392 SINILTLLAIVLATGLVVDDAIVVLENI---VRRRAEGMGPRAAAVLGTREVFFAVVATT 448

Query: 777 MAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                  +P++   G V      F   +AF + +++  ++ +   +   +   
Sbjct: 449 ATLAAVFIPLSFLPGQVGGLFREFGFVLAFSVGLSSIVALTLCPMLASRMLTK 501



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
              + + + + +  +F+   +   I    + +      FAL   G   N+ +   ++ L+G
Sbjct: 864  GFAIVIIFLVLAAQFESVLS-SLIIMSTVPLGLACAVFALIITGSSLNIYSQIGLVLLVG 922

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ +      +L       R  I+K+    L   + T +A  +  +P+     
Sbjct: 923  VMAKNGILIVEFAN---QLRDRGEDVRSSIEKACALRLRPVMMTMIATILGGVPLVFAHG 979

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G     +    +  G+  A   ++FI     L +  +   +A
Sbjct: 980  AGAEARVALGWVIVGGLGFATLVTLFITPVAYLLLARFGKPHA 1022


>gi|218781568|ref|YP_002432886.1| acriflavin resistance protein [Desulfatibacillum alkenivorans
           AK-01]
 gi|218762952|gb|ACL05418.1| acriflavin resistance protein [Desulfatibacillum alkenivorans
           AK-01]
          Length = 1045

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/599 (12%), Positives = 178/599 (29%), Gaps = 44/599 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L       G             L+ +P+                   +L    
Sbjct: 14  RPVTTIVLVLAAIFFGFYS-----YRNMGLELYPNVDIPVV---------SVSTILTGAS 59

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + ++  +    +E  + ++       S  + ++ I + F   R  +  A  V   +   
Sbjct: 60  PEIIDRDVTDVLEEQLNTIEGIKNLTSSSYEGRSVIVIEFVLERDIDAAAADVRAKVNLA 119

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D +  ++         ++       +       +S  + +    ++        
Sbjct: 120 QYYLPNDCEDPIVSKLDVGAFPVMNIAVKGGEDYRT---RSHFVDKVVKPRLQTLSGVGS 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++     P+ L     T + ++      +    G          S   +  
Sbjct: 177 VDLVGFRDREIRVWLKPADLEAQGLTASDVAGALARRHLELPGGRIENDTQELSIRVEGE 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                 +S                     +  + +  R         +      V  G  
Sbjct: 237 YATVEGLS-------------------QLVVKESLDGRLVRLRDVAKVEDGFEDVRTGSY 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L    +       +  ++      +   +   LR+ +      I+          S +  
Sbjct: 278 LNGSPVITVQVKKQPGVNEVQVCNSVKEVLKDLRSIAPAGIEMIISSDTSDFISRSMNGV 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   L  +++F+ +   +  LVA  SI   +I T  + + LG T+   ++  + L
Sbjct: 338 ENDLMIGVVLTALLMFVFLRSIRVTLVAIISIPTCLISTFLICNALGFTVNNLTMLAMSL 397

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD+ I+V E I     + + V  +  +G  +    +     T L   V +    G
Sbjct: 398 AVGMVVDNTIVVIENIFRHLEQGKPVRQAALVGAGQVGFAVLAGTATTLAVFVPVATMKG 457

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRY----KKMKSIDINPLSRFFLIP 535
              R    F +T+  ++LIS+  ++++   M   +++          I   P+     + 
Sbjct: 458 VIGRFFFSFGMTIAGAMLISLLVSLTLTPFMASHLMKRQTSEGTFSKILDLPMKALEALY 517

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI-DFKGGIQLGVLANRPVDLSV 593
             +    +R RF  +  ++L     I +    G+++   + +G   L         +  
Sbjct: 518 RRVLGWAVRFRFVTILFALLTFAAGIMMAKQLGMDFAPEEDQGETTLQYELPIGTSVEE 576



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 95/279 (34%), Gaps = 12/279 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  L           +G  QL V  +    L  +R   +     +          +
Sbjct: 222 IENDTQELSIRVEGEYATVEGLSQLVVKESLDGRLVRLRDVAKVEDGFEDVRTGSYLNGS 281

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-----V 671
            ++ +Q +    V + +V   VK+ + ++  ++      I+    S  + R        +
Sbjct: 282 PVITVQVKKQPGVNEVQVCNSVKEVLKDLRSIAPAGIEMIISSDTSDFISRSMNGVENDL 341

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +   A+L+++++R      L AI ++   +  T       G   N   + A+   +G
Sbjct: 342 MIGVVLTALLMFVFLR-SIRVTLVAIISIPTCLISTFLICNALGFTVNNLTMLAMSLAVG 400

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V++ +VV + +    +        R        +     +  +       +P+A   G
Sbjct: 401 MVVDNTIVVIENI---FRHLEQGKPVRQAALVGAGQVGFAVLAGTATTLAVFVPVATMKG 457

Query: 792 SVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     SF + +A  ++++   S+ +   +   +   +
Sbjct: 458 VIGRFFFSFGMTIAGAMLISLLVSLTLTPFMASHLMKRQ 496



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 66/154 (42%), Gaps = 7/154 (4%)

Query: 684  IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            + I+F+ +   L  + +L L  +   G   + G   N+ ++  ++ L+G  VN+ +++ D
Sbjct: 868  MAIQFESFLNPLVVMFSLPLAFSGVFGLIWITGGTINIMSMIGMILLVGIVVNNAILLVD 927

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
                  +     +   + + ++    L   + T+ +  IS LP+A+    G       ++
Sbjct: 928  FAN---QRRERGLGPVEAMLEAGPLRLRPIIMTAASTMISSLPIALALSEGSEFRQPMSL 984

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             +  G+  +   ++ +     +++ +  +   R+
Sbjct: 985  AVIGGLFTSTVLTLVVIPVGYIWVENISSGAGRL 1018


>gi|301165795|emb|CBW25367.1| probable membrane protein [Bacteriovorax marinus SJ]
          Length = 1018

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 61/589 (10%), Positives = 158/589 (26%), Gaps = 39/589 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  +  ++   +   G+L      + ++    +PS                     +  
Sbjct: 9   KNPVFSWMIMFSLILFGILGFKELGINENPDVDYPSVS--------------ISYSYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    + +   ++       +  +   +I L F   +  +    +V   +  
Sbjct: 55  TPEVVEKDVLEPVESVLVSMQGVKDMTSTANRGSGRIELEFTLDKDIDFALQEVQTLIGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    +   +  +   +  I+      + +     E ++      +D++   E   
Sbjct: 115 AQRQLPDTVEPPTVTKSNAADDPILYLAITSETLNER--ELNILFKDGIVDRLTTIEGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +  + D  +LR    T   +       +       F      +S     
Sbjct: 173 EVRAFGARDPMMRIDVDAKKLRSYQLTLTDIIDTLAREHVELPAGKFEDINKEESLRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +                  + ++                   I K +       
Sbjct: 233 EGKTVED----------------FREMIISKRGGRANYVPIKLSDVAYIHKGVENRTRIS 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +   +     +   +    + A         V          S   
Sbjct: 277 RVDGIPSLSMPIYKQRGANAVDVADRVKVRVDEISASLPEGTNLSVNFDRTQFVRLSIDE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L   V ++ +      +    +I   +I T A + L G TL   S  G+ 
Sbjct: 337 LIQNLIISALLTSFVCWIFLNSISATINILLAIPTAIIGTFAFMHLFGFTLNTFSFLGLT 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I    +       +   G       +  +    +     +    
Sbjct: 397 LAIGIVVDDAIVMLENIVRYAKMGNDKVQASFKGSREITFAVLATTAVLIAIFAPISLMP 456

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRA----MMIFIIRYKKMKSIDINPLSRFFLI 534
              G   R FA+T+ +++ +S   A+++        +    +   +       +     +
Sbjct: 457 GIEGRFFREFALTLCVAVALSSLEALTLAPMRCSQFLNVTSKGIFIHHWVDKMVEFTRDL 516

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
              +    ++ +   +G S+L    S+  L      +  +        +
Sbjct: 517 YAKLLKSALKHKILVLGGSVLIFGLSLLSLNHINKEFAPEADRSFMFVI 565



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 80/230 (34%), Gaps = 10/230 (4%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
               G ++     + +     A         +    I  ++     E      S++L    
Sbjct: 790  PAFGPQSIYRENRTRGVRVDANLSNNVTQSEAFDFIKKIAPNILPEKYSINFSKDLNESL 849

Query: 670  I-VGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALF--GIEFNLTAVAA 725
            I + +I+    ++ Y+ +  ++  FA      L +    T  F AL   G   N+ ++  
Sbjct: 850  INIVLIMILGLVIAYMVLGSQFNSFADPLTVFLAVPFGLTGSFLALLATGQTLNIYSMIG 909

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +L  +G      +++ +    + +L     +  + + ++        + T+     S +P
Sbjct: 910  ILLTMGIVKKTSILIVEF---SNQLRDEGKTLEEAVIEACTTRFRPIIMTTFTTLASAVP 966

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             AV    G       A+ +  G+ +A   ++F+       I   R K  R
Sbjct: 967  AAVMTGAGSETRMPMALVILGGVSLATIFTLFVVPSFYTLIARPRRKILR 1016



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 84/234 (35%), Gaps = 7/234 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P+ LS V    + ++      +        +   + +  ++V     +++   +I+  +P
Sbjct: 256 PIKLSDVAYIHKGVENRTRISRVDGIPSLSMPIYKQRGANAVDVADRVKVRVDEISASLP 315

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
             T  +      +  R  I + I  +IISA+      WI        +  +  +   I  
Sbjct: 316 EGTNLSVNFDRTQFVRLSIDELIQNLIISALLTSFVCWIFLNSISATINILLAIPTAIIG 375

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T  F  LFG   N  +   +   IG  V+D +V+ + +   ++             K   
Sbjct: 376 TFAFMHLFGFTLNTFSFLGLTLAIGIVVDDAIVMLENI---VRYAKMGNDKVQASFKGSR 432

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
           E     + T+        P+++     G     FA+ +   + +++  ++ +A 
Sbjct: 433 EITFAVLATTAVLIAIFAPISLMPGIEGRFFREFALTLCVAVALSSLEALTLAP 486


>gi|288961495|ref|YP_003451834.1| cation/multidrug efflux pump [Azospirillum sp. B510]
 gi|288913803|dbj|BAI75290.1| cation/multidrug efflux pump [Azospirillum sp. B510]
          Length = 1058

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 66/596 (11%), Positives = 157/596 (26%), Gaps = 33/596 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   +   G +        +  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVALFLAGAIAVF-----RLPISEYPEVVPPSVV---------VRAQFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVENMLYMQSQANSDGNLALTVTFKLGTDPDKAQQLVQNRVAQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++       
Sbjct: 116 AMPRLPADVQRLGVATVKSSPTLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLTRIAGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T   +       N      + G          Q 
Sbjct: 176 EVQVWGAGDYAMRVWLDPGKVAQRGLTATDVVNAIREQNVQVAAGVIGASPSPPDVPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 +    A      
Sbjct: 236 SINARGRL-------------KTADEFGDIVLKTGGDGGVTRLRDVARVELAAAQYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     +    + A L+          +          S   
Sbjct: 283 LLDNKPAVALGITQTPDANALAISDEVRKVMAELKDDMPDGVAYSIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T +LL   G ++   S+ G+V
Sbjct: 343 VVHTLLEAVALVVLVVIVFLQTWRASIIPLLAVPISIVGTFSLLLAFGFSINALSLFGMV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        S   +           I    +T +   V L    
Sbjct: 403 LAIGIVVDDAIVVVENVERNIASGLSARDATIRAMQEVSGPIIAIALTLVAVFVPLAAMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS F ++++  A+   +     +    +       F     
Sbjct: 463 GLTGEFYKQFAMTIAISTVISAFNSLTLSPALSAVLLRGHDQPQDWLTRGMNRVFGGFFR 522

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                F +A                 +L  + L  G     G  +        D  
Sbjct: 523 LFNRVFHKASDGYGRGVGGVVRRKGVMLAVYALLIGATVLLGRAVPSGFVPMQDKE 578



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              G+    IS + + + +  +++     L  +  + + +   L    L G + N+     
Sbjct: 879  NAGLWVFPISVLLVFLVLAAQYESLTLPLAILLIVPMSVLSALFGVWLTGGDNNIFTQIG 938

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             + L+G S  + +++ +  R+   L            ++    L   + TS+A  + V+P
Sbjct: 939  FMVLVGLSAKNAILIVEFARE---LEHEGRGVVQAAIEASRMRLRPILMTSIAFIMGVVP 995

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      G  +  +  + +  G++      + +     + +  
Sbjct: 996  LVTSSGAGAEMRHAMGVAVFAGMIGVTLFGLVLTPVFYVLLRK 1038



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 61/139 (43%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPISIVGTFSLLLAFGFSINALSLFGMVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFIS-VLPMAVWGGSVIGSFAIPMAFGIV 806
              + +S RD   +++ E  G  +  ++   A    +  M    G     FA+ +A   V
Sbjct: 425 ---SGLSARDATIRAMQEVSGPIIAIALTLVAVFVPLAAMTGLTGEFYKQFAMTIAISTV 481

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +S+ ++  +   +  
Sbjct: 482 ISAFNSLTLSPALSAVLLR 500


>gi|170746733|ref|YP_001752993.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170653255|gb|ACB22310.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 1052

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/683 (10%), Positives = 173/683 (25%), Gaps = 40/683 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   +   I  +G +  +        + ++P   P             +        
Sbjct: 8   RPIFAWAISIFIVLVGAISIVF-----LPISQYPDVAPVTIQ---------TTATYPGAP 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + +        +     Q +I  SFA           V   ++ 
Sbjct: 54  PERLYDGVTRIIEEELNGIPGLMYFESTSDTSGQAQILASFAPGSDPSRATVAVQNRIKR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L     +  ++        +     +         +      R+ + ++       
Sbjct: 114 VEARLPRAVTQQGIIVEEASTSFLQFVVVSSRDGSLSESDLGDLAARRILGELRRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP +L  L      ++      N        G +   +      
Sbjct: 174 RATLFSS-EKALRIWVDPVKLVGLGMVPGDVTAAVQAQNAQVASGTVGAQPAAEGQRIAA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K +++                +    +                 +           
Sbjct: 233 NVLVKGQLT-------------TVAEFAEIVLRANPDGSLVRLRDVAEVELGGQSYAMQT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +            A L+          V          S   
Sbjct: 280 RQDGRPAAGIGIQLAPGGNALAAATGVKARIAKLQRTLPANVSVTVPYDTTPFVEVSIRK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV  V+F+ +   ++ L+    + + ++ T   L + G ++ + ++ G+V
Sbjct: 340 VLMTLAEAMALVFAVMFLFLQNIRYTLIPTIVVPVALLGTCGALLVAGFSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    I       +   V L FF
Sbjct: 400 LAIGILVDDAIVVVENVERIMVEEGLPPTAATRKAMGQITGAIVGITAVLIAVFVPLAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530
            G      R FA++M  SI  S F A+S+  A+   +         + + +         
Sbjct: 460 PGSVGVIYRQFAVSMATSIAFSAFLALSLTPALCATLLRPVEAGQGHAESRFFGWFNRRF 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                   +      R     + +  ++ +        +             ++  +   
Sbjct: 520 QAGTRAYRSGVAGMLRRPVRALLVYAALVAALGWGYLRMPTSFLPIEDQGYVIVDAQTPP 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S     L+ ++  +  F            L Y          +  +  K   E  P + 
Sbjct: 580 ESAAGRTLDVVRRIEDHFGAEPAVAARTTLLGYGFSGQGQNAAIAFVTLKDWAERGPGNG 639

Query: 651 IQNTEIVGPKISRELIRKGIVGV 673
            +        +   L     + +
Sbjct: 640 AEAVSARANAVLGGLPDAIAMAL 662



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q   +  +        +       G+++A    ++    K+   +P 
Sbjct: 260 VRLRDVAEVELGGQSYAMQTRQDGRPAAGIGIQLAPGGNALAAATGVKARIAKLQRTLPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +                IRK ++ +  +   +   +++  +   + L     + + +  T
Sbjct: 320 NVSVTVPYDTTPFVEVSIRKVLMTLAEAMALVFAVMFLFLQNIRYTLIPTIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G   + G   N+  +  ++  IG  V+D +VV + +     +    +       K++ +
Sbjct: 380 CGALLVAGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMVEEGLPPTAATRKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +       +P+A + GSV      FA+ MA  I  +A  ++ +   +   + 
Sbjct: 438 ITGAIVGITAVLIAVFVPLAFFPGSVGVIYRQFAVSMATSIAFSAFLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 R 498



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 83/251 (33%), Gaps = 14/251 (5%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L V   +   + +      +  +G      F+G  +  +     PG +            
Sbjct: 784  LNVRNAKGQMVPLQSFARIAWTMGPSQIVGFNGYPSIKISGSAAPGYASGDAMAEMERLA 843

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                           +           +    + ++ + + + +   ++  +A+     L
Sbjct: 844  AQLPPGFDFAWTGQSLQEKLSGS----QATYLLALALVCVFLCLAALYE-SWAIPLAVLL 898

Query: 701  ILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            ++        FA+    +  ++     ++T+IG +  + +++ +  +    L       +
Sbjct: 899  VVPTGVVGAIFAMLVRDMPNDVYFKVGLITVIGLTAKNAILIIEVAKD---LVARGRPVQ 955

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFI 815
                ++        + TS A  + V+P+AV  G+ +    +    +  G+V A   ++F 
Sbjct: 956  AAALEACELRFRPIIMTSFAFILGVVPLAVANGASMNSQRAIGTGVLGGMVTATVLAVF- 1014

Query: 816  AAPILLFIYDW 826
            A P+   +   
Sbjct: 1015 ATPLFYVLIAR 1025


>gi|39936545|ref|NP_948821.1| RND efflux transporter [Rhodopseudomonas palustris CGA009]
 gi|39650401|emb|CAE28924.1| RND efflux transporter [Rhodopseudomonas palustris CGA009]
          Length = 1045

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/599 (12%), Positives = 163/599 (27%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I  +GL+       P   +   P                     L   
Sbjct: 11  RYPIATSLLMAGILFLGLIA-----YPALPVAPLPQVDFPTIQ---------ISASLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       +T+ F  +R  +  A+ V   +  
Sbjct: 57  SPETMASSVATPLERQLAQIPGISQMTSTSSLGSTAVTIQFDLNRNIDAAANDVQAAINA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              + +L   +           S     +   QI       
Sbjct: 117 AGGQLPKNLPNPPTYRKVNPADAPILI-LSATSDTLPLTTVSDNADAKIAQQISQITGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  + DP++L     +   +     +                D+    Y
Sbjct: 176 QVFIGGQQKPAIRIQVDPAKLMTKGLSLEDVRAQIAITTVDSPKGTL------DAPNRSY 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +++                K   D+                +            
Sbjct: 230 TIYANDQLT--------------ESKDWNDVILAYRNGGPLRIRDVGHAVTGPEDAKTAA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   +   +   T++        L AG  P     V          +   
Sbjct: 276 WANGKRGVFLVVFKQPGANVIDTVDHIKAELPRLVAGIPPAIKVEVISDRTTTIRAAVED 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ L ++   AL+   G TL   S+  + 
Sbjct: 336 VQFTLLLTIALVVMVIFLFLRSFWATIIPSVTVPLALLGACALMWAAGYTLDNLSLMALT 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I     + +  F +   G      TI   +I+ +   + L F G
Sbjct: 396 ISVGFVVDDAIVMLENIARHIEEGEKPFTAALKGAREIGFTIVSISISLVAVLIPLLFMG 455

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FA+T+ ++I +SM  ++++   M    +R                     +
Sbjct: 456 GIIGRLFREFAVTLAMTIAVSMLVSLTLTPMMASRFMRPATEVRHGRIYQWIEGAFEAML 515

Query: 539 AIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                         +   +    ++     LF          +    +   +    D+S
Sbjct: 516 RAYERGLDLVLRWRFTTLMVFFATVGLSVYLFVAIPKGFFPQQDVGMITATSEAAQDIS 574



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 94/278 (33%), Gaps = 12/278 (4%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                S   ++ +    +T   N  +         +LA R      +R    ++   + +
Sbjct: 212 ITTVDSPKGTLDAPNRSYTIYANDQLTESKDWNDVILAYRNGGPLRIRDVGHAVTGPEDA 271

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI- 666
                      V L             ++ +K ++  +V          V    +  +  
Sbjct: 272 KTAAWANGKRGVFLVVFKQPGANVIDTVDHIKAELPRLVAGIPPAIKVEVISDRTTTIRA 331

Query: 667 ----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
                +  + + I+ + M+I++++R  ++  +    T+ L +          G   +  +
Sbjct: 332 AVEDVQFTLLLTIALVVMVIFLFLR-SFWATIIPSVTVPLALLGACALMWAAGYTLDNLS 390

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+   +G+ V+D +V+ + +    +             K   E     V  S++    
Sbjct: 391 LMALTISVGFVVDDAIVMLENI---ARHIEEGEKPFTAALKGAREIGFTIVSISISLVAV 447

Query: 783 VLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           ++P+   GG +      FA+ +A  I V+   S+ +  
Sbjct: 448 LIPLLFMGGIIGRLFREFAVTLAMTIAVSMLVSLTLTP 485



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 97/254 (38%), Gaps = 6/254 (2%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                Q+ + +    D   + +  +   +           +     + +     VA  +  
Sbjct: 766  DTLNQIHIKSPTSGDQVPLSTFAKWTTVPVRPLSISHQGQFPATTISFNLAQGVALGQAT 825

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694
            E V+  + E+    T+  +     +  ++ +    + ++ + + + + + I ++ +   L
Sbjct: 826  EAVQAAMAEMGAPPTLTGSFQGTAQAFQQSLSTVPLLIVAALVVVYLILGILYESYIHPL 885

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
              ++TL       L    LFG +F+L A+  ++ LIG    + +++ D            
Sbjct: 886  TILSTLPSAGVGALAMLMLFGFDFSLIALIGIILLIGIVKKNGIMMVD--FAITAERDEH 943

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASS 811
            ++    I K+        + T+MAA +  +P+ +    G  +       M  G++V+ + 
Sbjct: 944  LNPEQAIRKAALLRFRPIMMTTMAAMLGGVPLMLGTGTGSEIRQPLGYAMVGGLLVSQAL 1003

Query: 812  SIFIAAPILLFIYD 825
            ++F    + L++  
Sbjct: 1004 TLFTTPVVYLYLDR 1017


>gi|302527848|ref|ZP_07280190.1| protein-export membrane protein SecD [Streptomyces sp. AA4]
 gi|302436743|gb|EFL08559.1| protein-export membrane protein SecD [Streptomyces sp. AA4]
          Length = 570

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 113/533 (21%), Positives = 207/533 (38%), Gaps = 34/533 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FV 66
           L      + +L AL  F                   LG+DL+GG+ + L     D     
Sbjct: 14  LAFFALIVVVLYALVFFTGSGKATP----------KLGIDLQGGTRVTLTARTPDGGQPT 63

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              L      + + +   G+G   +    N I ++       +   + +    +    ++
Sbjct: 64  RDSLNQARQIIETRVNGIGVGGTEVVLDGNNIVITVP-GEQGDEAKN-LGRTAKLGIREV 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                       +        +        +     +    +Q       + ++ Q  G 
Sbjct: 122 ITSVPNTPAAPPSAPASGAPSAPATAPSKPAGGGGAAGAPAQQPPSTTPSAPASGQNAGK 181

Query: 187 HRILIQLPGEQDPSRL---------------RQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           + I       Q P+ L                Q     A      V              
Sbjct: 182 NPIEEARAVRQAPALLPKDPKNQQEAAAAQAAQQKALAALTCAPNVADPLEGNDLPNQPL 241

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                      V     I G  +  A + +D +  + +VD+SF   G + + + T  NIG
Sbjct: 242 VTCGDKNATKYVLGPEIIPGTEIANANSGYDQQRGQWIVDLSFKSAGGKTWGDFTSANIG 301

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K  A VLD  V++AP +  AI  G  QI+G FT   A  LA +L+ GSLP+  +  +   
Sbjct: 302 KQAAFVLDTDVVSAPTVQNAILGGNTQITGKFTQTDAKNLADILKYGSLPLSFDSSDATT 361

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS----L 407
           V A LG  S+  G  A   GL ++ ++ +  Y   G++  +S+ L+ +L  A+L      
Sbjct: 362 VSATLGYASLQAGLIAGAIGLAVVFVYCLFYYRLLGILTIWSLVLSGLLVYAVLVLLGRW 421

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +G TL L  +AG+++ IG+  DS ++  ER+++E R+ ++   ++  G++RA  TI  S+
Sbjct: 422 IGYTLDLAGVAGLIIAIGITADSFVIYFERLKDEIREGRTFRSAVPRGWARARRTILASD 481

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             + +A  +L+    G V+GFA T+G+S ++ +     +   ++  +   K  
Sbjct: 482 AVSFLAAAILYIIAVGDVQGFAFTLGMSTVLDLVVVYLVTHPLVAMVSTSKSK 534



 Score = 87.4 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/192 (11%), Positives = 62/192 (32%), Gaps = 8/192 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +   L       G              K   +       +   V   +    ++ G++  
Sbjct: 319 QNAILGGNTQITGKFTQTDAKNLADILKYGSLPLSFDSSDATTVSATLGYASLQAGLIAG 378

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA----LFGIEFNLTAVAAVLTL 729
            I    + +Y    ++    +  I +L+L                G   +L  VA ++  
Sbjct: 379 AIGLAVVFVYCLFYYRL-LGILTIWSLVLSGLLVYAVLVLLGRWIGYTLDLAGVAGLIIA 437

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG + +  V+ ++R++  ++      +FR  + +         + +   +F++   + + 
Sbjct: 438 IGITADSFVIYFERLKDEIRE---GRTFRSAVPRGWARARRTILASDAVSFLAAAILYII 494

Query: 790 GGSVIGSFAIPM 801
               +  FA  +
Sbjct: 495 AVGDVQGFAFTL 506


>gi|13475613|ref|NP_107180.1| multidrug-efflux transport protein [Mesorhizobium loti MAFF303099]
 gi|14026369|dbj|BAB52966.1| multidrug-efflux transport protein [Mesorhizobium loti MAFF303099]
          Length = 1055

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 68/661 (10%), Positives = 171/661 (25%), Gaps = 44/661 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                ++L  +I   G +           + ++P   P               +      
Sbjct: 9   RTRLAIVLSIVISIAGAIAIF-----SLPVQQYPEITPPT-----------VSVTAFYPG 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
              + +   +    +   + +        +        ++++F      +     V    
Sbjct: 53  ASAEVIADVVGGPLETAINGVPNMMYMSSTSSNAGQYSLSVTFEVGTNPDIAQVNVQNRA 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q   S+L     +  +   +     ++             ++ +        D +     
Sbjct: 113 QLAISQLPAAVTQQGVSVRSRSPDFVLGIAFYSPDSKLDVLQITNFTSTTIADALSRVSG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +          +    +P+R+  L  T   ++      N        G    R+    
Sbjct: 173 VGEASVVGASEYSMRIWLNPARMDALGITADDVAAAIQRQNIQASLGQAGAPPAREGTEL 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           QY +  +  +                 +    +                 I         
Sbjct: 233 QYTLVARGRLLSTD-------------EFGDIVIRTGEAGAIVRLHDIARIELGARSYSS 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                         +     +   T          L     P     V          S 
Sbjct: 280 SASFAGHDTAMLQINQAPGANAIQTANAVRAELQRLSPTFPPGLQYQVVYDATRFVRTSL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S+          +VL+V ++ +   +  LV+  ++ + ++  +A+L   G ++   S+  
Sbjct: 340 SLIVRILGEAFLIVLVVTYLFLQDWRATLVSALAMPVAMLGAIAVLLAFGYSINSISLLA 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVF--CSLDMGFSRAYSTIFDSNITALIATVV- 476
           +VL IGL  D  ILV E ++     + +V    +      +    I  + +  L   +  
Sbjct: 400 LVLAIGLVADDAILVVENVKHVMEDDPTVETVAAARKAMGQITGPIISTTLVLLAVVIPT 459

Query: 477 --LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINP 527
             L    G   R FA+T+  +++IS    +++  A+   +        R   +       
Sbjct: 460 AFLSGISGQLYRQFAVTLSAALVISSVVGLTLSPALAAILLRRGQRGYRRGPLGWFARFM 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +             ++  F    +            + +G + + +    
Sbjct: 520 NATRVGYGRLVGFLVRLWIIPLAALAACFLGAYLLFSGLPSTFLPDEDQGALFVDIQLPN 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L   R+ +  +Q    + +  +   +       Q   S     V+  +        P
Sbjct: 580 AASLDRTRAIVGEVQKTLSATKGVENVISVAGFSIVQGTQSPNGAMVVAALDPWDQRNTP 639

Query: 648 L 648
            
Sbjct: 640 D 640



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 64/161 (39%), Gaps = 9/161 (5%)

Query: 666  IRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
               G   VI     +  Y+++      W   +  I +L   +    G   LFG++ +L  
Sbjct: 867  RSAGQESVIFGLAFLFAYLFLVAQYESWMLPIAVILSLGAALFGATGALVLFGLQNSLYV 926

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
              A++ LIG +  + +++ +  ++         S  +       +     + T+++  + 
Sbjct: 927  QIAIVLLIGLASKNAILIVEFAKE---RREEGQSIAEAARLGAEQRFRAVMMTALSFILG 983

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            ++P+AV    G     +  + +  G++ A +  +FI   + 
Sbjct: 984  IIPLAVSTGAGAGARQAVGVTIFGGMLAATTIGLFIIPALF 1024



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 89/244 (36%), Gaps = 5/244 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V L  +       +    S      +   L   Q    +++     +    ++++
Sbjct: 257 EAGAIVRLHDIARIELGARSYSSSASFAGHDTAMLQINQAPGANAIQTANAVRAELQRLS 316

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
              P            +  R  +   +  +  + + +L+  ++    W   L +   + +
Sbjct: 317 PTFPPGLQYQVVYDATRFVRTSLSLIVRILGEAFLIVLVVTYLFLQDWRATLVSALAMPV 376

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   +     FG   N  ++ A++  IG   +D ++V + ++  M+   T  +      
Sbjct: 377 AMLGAIAVLLAFGYSINSISLLALVLAIGLVADDAILVVENVKHVMEDDPTVETVA-AAR 435

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++ +  G  + T++     V+P A      G +   FA+ ++  +V+++   + ++  +
Sbjct: 436 KAMGQITGPIISTTLVLLAVVIPTAFLSGISGQLYRQFAVTLSAALVISSVVGLTLSPAL 495

Query: 820 LLFI 823
              +
Sbjct: 496 AAIL 499


>gi|300697832|ref|YP_003748493.1| multidrug efflux system, subunit B [Ralstonia solanacearum
           CFBP2957]
 gi|299074556|emb|CBJ54107.1| multidrug efflux system, subunit B [Ralstonia solanacearum
           CFBP2957]
          Length = 1048

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/537 (11%), Positives = 142/537 (26%), Gaps = 38/537 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATTLLMVAILLSGLVAYRMLPLSALPEVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F  S   +    +V   +   
Sbjct: 56  PDVMTSSITAPLERQFGQMPGLKQMTSSSSGGASVITLQFDLSLSLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +      + +L+   I        +    +  +   ++        
Sbjct: 116 GNLLPTDLPMPPIYSKVNPADAPILT-LAITSKTLPLPKLEDIVDTRVAQKLSQLPGIGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  +   +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRIQANTQALAALGLSIDDIRTAIGNANVNGAKGSFDGPLRASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                       +                 I            
Sbjct: 235 LRSAAE--------------------YGTMIVAYKNGAPIRLTDVAQIVDGAENSKLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A          +   +    +  A  L   L+          V          S +  
Sbjct: 275 ANATPAIILNVQRQPGANVIDVVNRAKALLPQLKDTLPANIDVAVLTDRTTTIRASVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFELMLSVALVVMVIFLFLRNVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I            +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYIEDGDPPMEAALKGAKQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   R FAIT+ +SILIS   ++++   M   ++R+           +      +
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLRHIPEPEQTRFYHAAGQFFDN 511



 Score = 81.7 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + M+I++++R      +     + L +  T G   L G   N   + A+    
Sbjct: 338 LMLSVALVVMVIFLFLR-NVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +         +   K   +     +  + +    ++P+   G
Sbjct: 397 GFVVDDAIVMIENI---ARYIEDGDPPMEAALKGAKQIGFTIISLTFSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 454 DVVGRLFREFAITLAVSILISAVVSLTLTP 483



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 88/265 (33%), Gaps = 8/265 (3%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            +  +         +         V      ++     S       +     + +      
Sbjct: 758  DPQLQLGPQSLYDLRVASTGGQQVPLGAFATVVEQPGSLVVNHQGQFPSATISFNLARGA 817

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +    ++ +     EI   +++Q +        +  +   +  ++ + I M I + + ++
Sbjct: 818  SLGAAVDAINAAEQEIGLPASMQTSFQGAALAFQSSLSNELWLILAAIITMYIVLGVLYE 877

Query: 690  WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   I + +          +L   G +  + A+  ++ LIG    + +++ D   + 
Sbjct: 878  STIHPVTILSTLPSAG-VGALLSLLVSGKDMGIIAIIGIILLIGIVKKNAIMMIDFALE- 935

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                   ++ RD I ++        + T+MAA +  LP+ +    G  +     I M  G
Sbjct: 936  -AEREQGMAPRDAIYQACLLRFRPILMTTMAALLGALPLMLGNGVGSELRQPLGITMVGG 994

Query: 805  IVVAASSSIFIAAPILLFIYDWRAK 829
            ++V+   ++F    I L       +
Sbjct: 995  LLVSQVLTLFTTPVIYLAFDSLGDR 1019


>gi|328881164|emb|CCA54403.1| Protein-export membrane protein SecD [Streptomyces venezuelae ATCC
           10712]
          Length = 589

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 103/573 (17%), Positives = 201/573 (35%), Gaps = 49/573 (8%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD- 64
             +IL +M+   G +                         LG+DL GG+ + L+   D  
Sbjct: 21  LALILIAMVALTGGMF----------------WSGHTTPRLGIDLAGGTSITLKAKADPG 64

Query: 65  ----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
                    +      +   +   G+    ++      I ++      ++   ++V    
Sbjct: 65  QESAVNETNMNTAVGIIERRVNGLGVSEAEVQTQGRENIIVNIPRGTNEKQAREQVGTTA 124

Query: 120 QGVNSKL-------------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
           Q     +                              S            +    Q   +
Sbjct: 125 QLYFRPVLGVTNGGAAPAPSASSSGSPSASPKPSSSASGSSVGEKKPTPTATGSAQGRAL 184

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR-LRQLLGTTAKMSFHKVLPNNSKKG 225
                        +       +          P      L    A ++       ++   
Sbjct: 185 TEALKAPSPTPTGSSSASSKPKATGTPSATPTPDASTAALEQKFASLNCLDPKQRSAAGQ 244

Query: 226 FMFGVRFL----RDSDGN-QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
            +   +       D+ G     +    E+ G  ++ A   FD +    +V + F   G++
Sbjct: 245 GVLPTQPTVACGEDAPGQWSKYLLGPAEVDGKDVDDAKGVFDQQRGMWIVTMDFTSGGSK 304

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSG----KAQISGNFTIETAGILAAMLR 336
           +F  +T     +         VL   V++           A+ISGNF  ++A  L  +L 
Sbjct: 305 KFQSITSKLSSQADPQNRFAIVLDGEVVSAPSVRQTLSASAEISGNFNQQSAQDLGNILS 364

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
            G+LP+         V A LG + +  G  A   GL L++++++  Y    L+A  S+ +
Sbjct: 365 YGALPLSFQTQSVDTVTAALGGEQLEAGLIAGAIGLGLVIIYLVAYYRGLSLIAILSLGV 424

Query: 397 NVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           + +LT  +++LLG      L LP++ G ++ IG+  DS I+  ERIR+E R+ +++  ++
Sbjct: 425 SALLTYVIMALLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERIRDELREGRTLRPAV 484

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           +  + RA  TI  S+  + +A  VLF    G V+GFA T+GL+ L+ +       + +M 
Sbjct: 485 ERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPVMT 544

Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
            + R K   +           +     ++  R 
Sbjct: 545 LLARTKFFGNGHAWSGLDPKRLGAKPPLRRSRR 577



 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 91/266 (34%), Gaps = 10/266 (3%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
              +       G  +   + ++    +  ++      + D    +    +  L       
Sbjct: 291 MWIVTMDFTSGGSKKFQSITSKLSSQADPQNRF--AIVLDGEVVSAPSVRQTLSASAEIS 348

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
           G+   Q+            +      Q+ + V   +  E +  G++   I    ++IY+ 
Sbjct: 349 GNFNQQSAQDLGNILSYGALPLSFQTQSVDTVTAALGGEQLEAGLIAGAIGLGLVIIYLV 408

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVY 741
             ++   +L AI +L +    T    AL G       NL AV   +  IG + +  +V +
Sbjct: 409 AYYR-GLSLIAILSLGVSALLTYVIMALLGPAIGFALNLPAVCGAIVAIGITADSFIVYF 467

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      + R  ++++        + +   +F++   + +     +  FA  +
Sbjct: 468 ERIRDELRE---GRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTL 524

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWR 827
               ++          P++  +   +
Sbjct: 525 GLTTLLDVVVVFLFTKPVMTLLARTK 550


>gi|159026939|emb|CAO89190.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1100

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/569 (13%), Positives = 157/569 (27%), Gaps = 34/569 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  IG +      L +     F          LG D +      ++ +
Sbjct: 11  KRPVLTTVCSILIVLIGAIAIPFLPLEKLPQLAFIQVAVNAN-YLGTDAK-----TVQDN 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  +      +        +   S    Q+ + + F     +      V   +  
Sbjct: 65  VTTVLDRQINGTEQIVY-------MQSQSTNTGQSTVNVFFPVEMDRNIAQVLVQNRVST 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV-----ISHAIEQSMEIIRQRIDQIGI 176
             + L  +  +  + T T+     +    +             +  S  + R    +I  
Sbjct: 118 AAASLPEEVNRQGVTTNTQSPSVTLAYGISAKPDEKGNYPYDTVFLSNFVDRVIDAEIRR 177

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              L    +P  L     +  ++       N        G     + 
Sbjct: 178 IEGVGSTTIIGEREYALRFWLNPDALAARGVSAEQVVQAIREQNIQVGAGTIGGDPSPEE 237

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +     ++                +    +                        
Sbjct: 238 QQFQIAIRAVGRVATGE-------------EAENIVVKVGENGDLIRIKDVGRAEIGAEN 284

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          I       +   T +      A L     P     +   N     
Sbjct: 285 YSTAAYFDKSPAVVYIVYQLPGSNAWNTAKLVKEKMAELEPSFPPGLNIAITLDNTAFVA 344

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S     GT      LV++V+F+ +   +  ++   +I +++I T+A+   LG +L   S
Sbjct: 345 ASLEEAVGTLVEAILLVILVIFIFLQDWRTTIIPAIAIPVSLIGTMAVALALGYSLNNLS 404

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  ++L  GL VD  I+V E + E+ R+    F +         S +  S++      + 
Sbjct: 405 LFAVILATGLVVDDGIVVVEAVSEKLRQGMRPFQAALDAMGELTSAVIASSLVLFAVFIP 464

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R FA+ +  SILIS F A+S    M   I++  +     +      F 
Sbjct: 465 VTFFPGTVGIVYRQFAVIISASILISTFNALSFSPTMSAIIMKPPQGTRGPLGLFFEGFN 524

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSIC 562
                  +  R     +       +    
Sbjct: 525 RGFNAVKEGYRRSIEFLIRVRFLVLPFFI 553



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 86/237 (36%), Gaps = 7/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + +  V       +    +           +  Q    ++    ++++    ++    
Sbjct: 268 DLIRIKDVGRAEIGAENYSTAAYFDKSPAVVYIVYQLPGSNAWNTAKLVKEKMAELEPSF 327

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P        +         + + +  ++ + + +++ I+I    W   +     + + + 
Sbjct: 328 PPGLNIAITLDNTAFVAASLEEAVGTLVEAILLVILVIFIFLQDWRTTIIPAIAIPVSLI 387

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T+      G   N  ++ AV+   G  V+D +VV + + + ++     +        ++
Sbjct: 388 GTMAVALALGYSLNNLSLFAVILATGLVVDDGIVVVEAVSEKLRQ---GMRPFQAALDAM 444

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819
            E     + +S+  F   +P+  + G+   V   FA+ ++  I+++  +++  +  +
Sbjct: 445 GELTSAVIASSLVLFAVFIPVTFFPGTVGIVYRQFAVIISASILISTFNALSFSPTM 501



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 71/178 (39%), Gaps = 20/178 (11%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFF----------ALFGI 716
               V   ++ I + + +  +++ Y   +  + T+ L I   +G            +LF  
Sbjct: 879  AAPVIFGLAFIVVFLVLAAQYESYIDPIIIMITVPLAILGAMGALLLRANFLQVGSLFPA 938

Query: 717  EFNLTAV-AAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVY 774
              N      A++ LIG +  + +++     +      T  +S  +   ++  E L   + 
Sbjct: 939  VNNNIYAQVALVMLIGLAAKNAILIV----EFANQSRTLGLSIPEAAARASTERLRPILM 994

Query: 775  TSMAAFISVLPMAV-WGGSVIG--SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+++  +  LP+ +  G   +   S    +  G +++   S+F+   + + I  + A+
Sbjct: 995  TAISGLVGFLPLVIASGAGAMSRWSLGTAILGGYLISTVLSLFLVPVLYVLIKQFEAR 1052


>gi|262403743|ref|ZP_06080301.1| protein-export membrane protein SecF [Vibrio sp. RC586]
 gi|262350247|gb|EEY99382.1| protein-export membrane protein SecF [Vibrio sp. RC586]
          Length = 300

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 73/279 (26%), Positives = 141/279 (50%), Gaps = 6/279 (2%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R+    ISIL  + S+      GLN G+DF GG+    + +  +  + +   L+      
Sbjct: 13  RYITGVISILLMVISLTAFAVKGLNMGLDFTGGMVTEAIIDSSISKNQLLEQLQPKLGEA 72

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           ++         +++R         A+      +   +  +     I +  +VG ++ ++L
Sbjct: 73  VTVTPSGESGRWVIRYPL-----AAENAAPVDIDGLLHLVSKHVQIVSNSMVGSQVGQDL 127

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           + +G + ++I  +++L Y+  RF+W  A GA+  L+ D+   LGFFA+  +EFNLT  AA
Sbjct: 128 VDQGGLALLICLLSILGYLSFRFEWRLASGALLALLHDVVLVLGFFAITQMEFNLTVFAA 187

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           VL ++GYS+ND +++ DR+R+ + L        ++ D++I  T  R++ TS    +++  
Sbjct: 188 VLAVLGYSLNDSIIIADRIRE-LLLAKQQTPTAEINDQAIIATFSRTMVTSGTTLMTISA 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + GG+ +  FAI M  G++    SSI I   +  ++ 
Sbjct: 247 LWIMGGAPLQGFAIAMFIGVISGTWSSISIGTVLPEWLG 285


>gi|312891533|ref|ZP_07751047.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mucilaginibacter paludis DSM 18603]
 gi|311295996|gb|EFQ73151.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mucilaginibacter paludis DSM 18603]
          Length = 1086

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 79/572 (13%), Positives = 171/572 (29%), Gaps = 40/572 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  ++   G++           +D++P+  P               + +   
Sbjct: 8   KRPVTAIVISVVLSISGIICLF-----NLAVDQYPNISPP-------------SVSVNGS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKE-GIGVFSMR---QIQNKITLSFADSRFKENIADKVT 116
                   ++      +   +    G+   +          I ++F         A  V 
Sbjct: 50  YTGADAQTVEQTVATPIEEQINGTPGMEYMTSTNTNSGGMGIRVTFKIGTNVHIAALNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L     K  L         ++L      +   +             D I  
Sbjct: 110 NRVGIAGPSLPAVVSKLGLTVRASNPDQLMLVGIYSPKHTHNITFLDNYTNTYIQDAILR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P ++     T A ++      N        G      S
Sbjct: 170 VPGVGDVSAR-TDNFSMRIWMNPDKMASYGLTPADVTAALSAQNAYVAAGSVGAPPQFSS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 VE  + ++G          +  +    + +      A+  +      +      
Sbjct: 229 Q----TVETGILVNG--------MLNKASDYEKIVVKAIPGTAQLIYLKDVARVELGKFT 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +     +          +   T        A L+         +V   ++    
Sbjct: 277 FSSNAFIDGNRASTLQIYQSPGSNALQTANNVYAALAKLKKSFPSDVDYVVPFESITIIK 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S     GT     GLV IV+F+ +   +  L+   +I ++++ T      LG T+   +
Sbjct: 337 VSMEEVVGTLIKALGLVAIVVFLFLQNWRSTLIPILAIPVSILATFCFFIPLGFTINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + G VL IG+ VD  I+V E ++   + K  S   +         + +    +      V
Sbjct: 397 MFGFVLAIGIVVDDAIIVVEAVQHYIDEKGMSPKEATYHAMKEISAPVIAIALILASVFV 456

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F     G   + FAIT+ +S+++S F A+S+  A+   ++R     +   + L +FF
Sbjct: 457 PVGFIPGIVGRLYQQFAITIAISVILSAFIALSLTPALCTLLLRPTSKLTEKSSWLDKFF 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLL 564
              + +  +       GV  SI  +   + LL
Sbjct: 517 GWFNRVFEKTTSKYTNGVNRSIKGARYIVILL 548



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 84/245 (34%), Gaps = 6/245 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             + + L  V            +        + L   Q    +++     +     K+ +
Sbjct: 258 TAQLIYLKDVARVELGKFTFSSNAFIDGNRASTLQIYQSPGSNALQTANNVYAALAKLKK 317

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
             P             I +  + + +  +I +   + I +++  + W   L  I  + + 
Sbjct: 318 SFPSDVDYVVPFESITIIKVSMEEVVGTLIKALGLVAIVVFLFLQNWRSTLIPILAIPVS 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T  FF   G   N   +   +  IG  V+D ++V + +     +    +S ++    
Sbjct: 378 ILATFCFFIPLGFTINTLTMFGFVLAIGIVVDDAIIVVEAV--QHYIDEKGMSPKEATYH 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPIL 820
           ++ E     +  ++      +P+    G V      FAI +A  ++++A  ++ +   + 
Sbjct: 436 AMKEISAPVIAIALILASVFVPVGFIPGIVGRLYQQFAITIAISVILSAFIALSLTPALC 495

Query: 821 LFIYD 825
             +  
Sbjct: 496 TLLLR 500



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 66/173 (38%), Gaps = 12/173 (6%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD-ITKTLGFFALFGIEFNLTAVAA 725
              I   + S I + +++   ++ W      +  + +      +       I  N+ A   
Sbjct: 878  TTIYIFMFSIIFVFLFLAALYESWSVPFSVMLAVPISAFGAIVALTTAPNITNNVYAQIG 937

Query: 726  VLTLIGYSVNDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            ++TLIG S  + +++  + ++R                 +++   L   + TS+A  + V
Sbjct: 938  LITLIGLSAKNAILIVEFAKIR-----VDRGEELIKSTLEAVRLRLRPIIMTSLAFILGV 992

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            LP+ +    G     +  + +  G++ +++ SIFI   + +           +
Sbjct: 993  LPLVLATGAGAESRNTIGVTVLGGMIASSTISIFIVPVLFVLFTRLSYGKKEL 1045


>gi|82701824|ref|YP_411390.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrosospira multiformis ATCC
           25196]
 gi|82409889|gb|ABB73998.1| Hydrophobe/amphiphile efflux-1 HAE1 [Nitrosospira multiformis ATCC
           25196]
          Length = 1038

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 72/550 (13%), Positives = 161/550 (29%), Gaps = 41/550 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I      +A      Q  + ++P   P               +++    
Sbjct: 8   RPIFASVISIIIV-----LAGLAAALQLPIAQYPEIAPPT-------------VLITATY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   L     +  FS     +    IT +F      +     ++ 
Sbjct: 50  PGASAETLTKTVAAPIEEQLSGVQDLLYFSSSADSSGTLTITATFEVGTDVDQATFNISN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTT-EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            +     +L  + ++  L       +I IV    + ++     +  S       +D++  
Sbjct: 110 RVNVALPRLPDEVRRTGLKIEKRSNDILIVFMLISTEKGKYDPLYLSNYATLNIMDELRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           ++              +     P R+ QL   T  ++      N        G       
Sbjct: 170 TDGVGDATVFGGQDYSMRIWLHPDRMAQLGVATTDITAAIQAQNAQYAAGKIGQEPAPPD 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y V  +  +                 +    I   +      +      I      
Sbjct: 230 QQLIYTVNARGRL-------------VTPEQFGDIILRADGPRGVLYLKDVARIELGAQS 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +   T          L+         +V         
Sbjct: 277 YDVRTALNGQPGAGIPVFLQPGANALDTKNALVAKMEELKKHFPQGMDYVVPYDTSLFVK 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LVL+V+++ +   +  L+   ++ ++++ T A L   G ++   +
Sbjct: 337 ASMWEVLKTLGEAMVLVLLVVYLFLQSWRATLIPIIAVPISLVGTFAGLWAFGFSINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I+V E I    + +  S   +      +  S +    +      V
Sbjct: 397 LFAMVLSIGIVVDDAIVVLENIERLMDEEKLSPLKAAIRSMEQVASAVVAIVLVLCAVFV 456

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F G   G   R FA+T+ +++ IS   A+++  A+   ++++   +S      +  F
Sbjct: 457 PVAFMGGIAGELYRQFAVTVAVAVTISGLVALTLTPALCAILLKHTHGESRFFLAFNSGF 516

Query: 533 LIPDCIAIQF 542
                  I+ 
Sbjct: 517 QRVTNFYIRM 526



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  I  + + +  T      FG   N   + A++  IG  V+D +VV + +    
Sbjct: 363 SWRATLIPIIAVPISLVGTFAGLWAFGFSINTLTLFAMVLSIGIVVDDAIVVLENI--ER 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +    +S      +S+ +     V   +      +P+A  G   G +   FA+ +A  +
Sbjct: 421 LMDEEKLSPLKAAIRSMEQVASAVVAIVLVLCAVFVPVAFMGGIAGELYRQFAVTVAVAV 480

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++   ++ +   +   +  
Sbjct: 481 TISGLVALTLTPALCAILLK 500



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 72/201 (35%), Gaps = 10/201 (4%)

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
            + ++I         Q          +      I     + I + + +  +F+ W   L  
Sbjct: 835  LVEEIAAKNLPDGYQIAWTGQAYQEKRTGSAAIFAFSFAIIMVFLILAAQFETWALPLAV 894

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            I  +   +   L      G+  ++     ++TLIG +  + +++ +      +     + 
Sbjct: 895  IMAVPFALAGALLAVLARGMPNDIYFQIGLITLIGLAAKNAILIVEFA---TQKMAEGLP 951

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS-SS 812
              +   ++        V TSMA  + ++P+ +    G +   S    +  G+++A   ++
Sbjct: 952  VAEAAIEAARLRFRPIVMTSMAFVLGIVPLLIATGAGAAARRSMGTGVFGGMLLATFVAT 1011

Query: 813  IFIAAPILLFIYDWRAKNARI 833
            IFI  P+       + K   +
Sbjct: 1012 IFI--PLFFTWLSRKNKGKPV 1030



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 54/528 (10%), Positives = 128/528 (24%), Gaps = 50/528 (9%)

Query: 10   LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
            +      + ++               P                G  +   +  D      
Sbjct: 535  VIGAFVFLSIIALSAYLFKTVPESFVPPEDQ------------GYVVTATILPDGATLAR 582

Query: 70   LQMYSDELRSF------------LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                ++ +R+             +    +     +     + ++F D   ++  A+ +  
Sbjct: 583  TTKTAESVRAGIADDPAVAHQFVVNGFDLIGGGNKTSSATMFVAFKDWSERKATAEDIIQ 642

Query: 118  FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             L G+  +       +          +    +  +         Q   ++   I  +   
Sbjct: 643  KLMGIGMQQPDGIAISFNPPAIRGLGTAGGFEVYVQSRAGANPVQLSIVVNNLIAALNQE 702

Query: 178  ESTIQRLGSHRI-LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                      R  + Q   E D  +        A +         S     F        
Sbjct: 703  PRLAGINTFFRPTVPQFFVEVDEEKAISQQVRIADIYATLQSTMGSLYINDFNYSGRTYR 762

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Q   +                         V +            +++ +       
Sbjct: 763  VQMQAEPQ---------------YRMHPEDLGRVYVRSQSGAMVPMSALSKLSTIVGAEQ 807

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
            +     L A  I  +   G +       +E                     E+R   A +
Sbjct: 808  LERYNGLLAAKILGSGAPGVSSGDAIRLVEEIAAKNLPDGYQIAWTGQAYQEKRTGSAAI 867

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                      +    +V ++L          L    ++   +   L  +   G    +  
Sbjct: 868  -------FAFSFAIIMVFLILAAQFETWALPLAVIMAVPFALAGALLAVLARGMPNDIYF 920

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              G++  IGLA  + IL+ E   ++  +   V  +        +  I  +++  ++  V 
Sbjct: 921  QIGLITLIGLAAKNAILIVEFATQKMAEGLPVAEAAIEAARLRFRPIVMTSMAFVLGIVP 980

Query: 477  LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            L      G  A R     +   +L++ F A   +     ++ R  K K
Sbjct: 981  LLIATGAGAAARRSMGTGVFGGMLLATFVATIFIPLFFTWLSRKNKGK 1028


>gi|302517988|ref|ZP_07270330.1| protein-export membrane protein SecD [Streptomyces sp. SPB78]
 gi|302426883|gb|EFK98698.1| protein-export membrane protein SecD [Streptomyces sp. SPB78]
          Length = 573

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 103/518 (19%), Positives = 204/518 (39%), Gaps = 42/518 (8%)

Query: 45  SLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-I 98
            LG+DL GG+ + L+   +           +    D +   +   G+    ++   N  I
Sbjct: 20  RLGIDLAGGTSITLKAQNEPGQKNAVNKTNMDTAVDIINRRVNGLGVSEAEVQTQGNDHI 79

Query: 99  TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL--------------------VTT 138
            ++      ++   ++V    Q     +                              + 
Sbjct: 80  VVNIPRGTNEKQAREQVGTTAQLYFRPVLQVAAGTPAADSSASPSPSASSSPSGKTSPSP 139

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
                +   + +      + A         + + Q   +++T                  
Sbjct: 140 KSSAGAGGSTASPGAGSSASAGAGDASPQGRAVPQALKADATPSANAKSDKDADAKASPS 199

Query: 199 PSRLRQLLGTTAKMSFHK--------VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           P         T  +            V      K     V    +       +    E+ 
Sbjct: 200 PDASAAPDDKTTALFGSLDCSNKAQRVKATTGVKPTASMVACGNEGGQWAKYLLGPAEVE 259

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
           G +++ A A  D + ++ +V + F+  G ++F  +T     +   +     VL   V++ 
Sbjct: 260 GKNVSKADAVLDTQRNQWIVQMKFNGEGKKKFSSITGKLAQQQSPMNQFAIVLDGDVVSA 319

Query: 311 AIPSGK----AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              S +    A+ISG+F+ E+A  LA +L  G+LP+  +      V A LG + ++ G  
Sbjct: 320 PSVSERLGGSAEISGSFSQESAKDLANVLSYGALPLTFHEETVTTVTAALGGEQLHAGLI 379

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVL 422
           A   GL L++++++  Y    L+A  S+ ++ ILT  +++LLG      L LP++ G ++
Sbjct: 380 AGAVGLALVIIYLVAYYRGLALIAIASLVVSGILTYTIMTLLGPGIGFALNLPAVCGAIV 439

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+  DS I+  ER+R+E R+ +++  +++ G+ RA  TI  S+  + +A  VLF    
Sbjct: 440 AIGITADSFIVFFERVRDEVREGRTLRPAVERGWPRARRTILVSDFVSFLAAAVLFVVTV 499

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G V+GFA T+GL+ L+ + T     + ++  + R K  
Sbjct: 500 GKVQGFAFTLGLTTLLDVVTVFLFTKPLLTLLARRKFF 537



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 89/267 (33%), Gaps = 10/267 (3%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
               +    + +G  +   +  +        +    +  GD+       E+         
Sbjct: 275 NQWIVQMKFNGEGKKKFSSITGKLAQQQSPMNQFAIVLDGDVVSAPSVSERLGGSAEISG 334

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                +   +  ++      +      +    V   +  E +  G++   +    ++IY+
Sbjct: 335 SFSQESAKDLANVLSYGALPL--TFHEETVTTVTAALGGEQLHAGLIAGAVGLALVIIYL 392

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVV 740
              ++   AL AI +L++    T     L G       NL AV   +  IG + +  +V 
Sbjct: 393 VAYYR-GLALIAIASLVVSGILTYTIMTLLGPGIGFALNLPAVCGAIVAIGITADSFIVF 451

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++R+R  ++      + R  +++         + +   +F++   + V     +  FA  
Sbjct: 452 FERVRDEVRE---GRTLRPAVERGWPRARRTILVSDFVSFLAAAVLFVVTVGKVQGFAFT 508

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWR 827
           +    ++   +      P+L  +   +
Sbjct: 509 LGLTTLLDVVTVFLFTKPLLTLLARRK 535


>gi|197120365|ref|YP_002140792.1| RND family efflux pump inner membrane protein [Geobacter
           bemidjiensis Bem]
 gi|197089725|gb|ACH40996.1| efflux pump, RND family, inner membrane protein [Geobacter
           bemidjiensis Bem]
          Length = 1470

 Score =  163 bits (411), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/617 (10%), Positives = 179/617 (29%), Gaps = 55/617 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +   +  +L   +  +GL         +  ++ FPS                  +V    
Sbjct: 9   KRPVFAAVLMLALVTLGLFS-----YRRLSVEMFPSVEIPV-----------ISVVTKFP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + +   +    +E  + +      +   R+  + + + F         + +    +
Sbjct: 53  GASPESIEREVSKKIEEAVNQIAGVKHVMSYSREGVSTVVVEFRLEEKINEASQEARAKI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            G+   L    +  ++       + +V     +        E +  + +Q   ++     
Sbjct: 113 AGIRGNLPTGIEDPIIQKLDFNALPVV--SLAVKGRGLDTKELTTLVDKQIKRRLENVSG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         ++    DP RL  L      +       N +                 
Sbjct: 171 VGKVDVVGSAKREVTVTIDPVRLEALGLGVDAVVAGLKSENVNTPLGRLTH--------- 221

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                      G +      +  P   +   ++   + G R         +         
Sbjct: 222 -----------GGNEYPIRISGKPGQVEGFRNMVIAQRGGRGITLSEVAEVTDGAKEQRS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++            ++  +    ++        LR    P     V          S 
Sbjct: 271 LALINGEPAVALDVLKQSGANMVEVVDGVKKSVEKLRKELPPGVEVTVVRDASIPTRESL 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K T  I   L +I++F  +   +  ++   ++ ++V+ +  +++ +G TL + ++  
Sbjct: 331 ADVKETMLIGGLLTVIIVFCFINSWRSTVITGLTLPISVVSSFIVMNAMGMTLNIMTMMA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L IGL +D  I+V E I       +    +  +G S     +F ++++ +   V + F
Sbjct: 391 LSLAIGLLIDDAIVVRENIVRHLEHGEDHLTAARIGTSEIGLAVFATSMSIVAVFVPVAF 450

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------------KKMKSID 524
                G     F +T+  ++L+S+F + ++   +                   + +   +
Sbjct: 451 MRGIVGRFFFQFGMTVAFAVLVSLFVSFTLDPMLSSRWHDPAIELKGRRKGIARLLDRFN 510

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               +        I+      +       + F+                D KG  Q+   
Sbjct: 511 DRFDAWADSYRKAISWALNHRKTVLAAAFLSFAAGIAIFGTLESSFMTNDDKGEFQVVFK 570

Query: 585 ANRPVDLSVVRSNLESL 601
                 ++     L+++
Sbjct: 571 TAPDASIAESTDRLKAV 587



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 94/277 (33%), Gaps = 22/277 (7%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             N  I  +GG  + +     V          +L  G+ +      +++    ++   G 
Sbjct: 240 FRNMVIAQRGGRGITLSEVAEVTDGAKEQRSLALINGEPAVALDVLKQSGANMVEVVDGV 299

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             +  ++ + +   +   V       T      +   ++  G++ VII    +       
Sbjct: 300 KKSVEKLRKELPPGVEVTVVRDASIPTRESLADVKETMLIGGLLTVIIVFCFIN------ 353

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +    TL + +  +       G+  N+  + A+   IG  ++D +VV    R+N
Sbjct: 354 -SWRSTVITGLTLPISVVSSFIVMNAMGMTLNIMTMMALSLAIGLLIDDAIVV----REN 408

Query: 748 M-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAF 803
           + +                +E       TSM+     +P+A   G V      F + +AF
Sbjct: 409 IVRHLEHGEDHLTAARIGTSEIGLAVFATSMSIVAVFVPVAFMRGIVGRFFFQFGMTVAF 468

Query: 804 GIVVAASSSIFIAAPI-------LLFIYDWRAKNARI 833
            ++V+   S  +   +        + +   R   AR+
Sbjct: 469 AVLVSLFVSFTLDPMLSSRWHDPAIELKGRRKGIARL 505



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 53/492 (10%), Positives = 124/492 (25%), Gaps = 33/492 (6%)

Query: 49   DLRGGSHLVLEVDEDDFVNGFLQMYSDEL--RSFLKKEGIGVFSM------RQIQNKITL 100
            D +G   +V +   D  +          L     + +      S+            + +
Sbjct: 560  DDKGEFQVVFKTAPDASIAESTDRLKAVLAVIKGVPEVEHTYASIGAGDSGTVQSGALYV 619

Query: 101  SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
               +   ++   ++V    +     +         V         +      + + +   
Sbjct: 620  KLKEKAHRKRSQEEVQQAFREKLKAIPGITTSIERVGDVGGAQKPLQVNLKGEDIPT--- 676

Query: 161  EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
                   + + +   I       +     + +     D +R +     T  ++       
Sbjct: 677  -LKRYAAQLKQEIYKIPGVVDLEVTLDHDIPEYRMTVDRARAQDAGVNTNDIA------- 728

Query: 221  NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                         R   G      +  +   + L         +    V D+        
Sbjct: 729  ---------STVSRLVGGEAVTTYEDEDGDAVDLRVRLPEALRRDPGQVRDLKLAVAKGD 779

Query: 281  RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
                V   N+           +    +      S         T       AA       
Sbjct: 780  ETALVPLANLVSYEVSNTPSEINRRDLSRLVTISANLDGLPIGTAVEKVKEAAARVPMQP 839

Query: 341  PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
               +    E        S      +  I    V ++L          L    S+ L+V+ 
Sbjct: 840  GYSVGFSGE--AEDMAESFGYMAESLIIAIIFVYLILAAQFESFLEPLAIMLSLPLSVVG 897

Query: 401  TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
               +L L G T+ + S+ G+++ +GL   + IL+ +  +    +    F ++        
Sbjct: 898  MAGMLKLTGDTVNIMSLIGLIMLMGLVTKNAILLVDYAKVLQGRGMDRFQAVVEAGRTRL 957

Query: 461  STIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
              I  + +  +   + LFF    G       A  +   +L S    + +V  M   +   
Sbjct: 958  RPIVMTTLAMIFGMLPLFFALGSGAEMRAPMARAVVGGLLTSTLLTLLVVPVMYTVLDDL 1017

Query: 518  KKMKSIDINPLS 529
            ++          
Sbjct: 1018 EEWLRRKWKGKK 1029



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 56/137 (40%), Gaps = 7/137 (5%)

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +II+ I + + +  +F+ +   L  + +L L +    G   L G   N+ ++  ++ L+
Sbjct: 862 SLIIAIIFVYLILAAQFESFLEPLAIMLSLPLSVVGMAGMLKLTGDTVNIMSLIGLIMLM 921

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
           G    + +++ D  +    L    +     + ++    L   V T++A    +LP+    
Sbjct: 922 GLVTKNAILLVDYAK---VLQGRGMDRFQAVVEAGRTRLRPIVMTTLAMIFGMLPLFFAL 978

Query: 789 -WGGSVIGSFAIPMAFG 804
             G  +    A  +  G
Sbjct: 979 GSGAEMRAPMARAVVGG 995


>gi|300693552|ref|YP_003749525.1| acriflavin resistance/multidrug efflux transporter acrb [Ralstonia
           solanacearum PSI07]
 gi|299075589|emb|CBJ34882.1| putative Acriflavin resistance/Multidrug efflux transporter AcrB
           [Ralstonia solanacearum PSI07]
          Length = 1036

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 78/615 (12%), Positives = 184/615 (29%), Gaps = 43/615 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+ + ++   GLL        +  +  FP       I+            LE  
Sbjct: 11  RNPVPAVLCFVLLTVFGLL-----GFHKLQIQDFPDMDLPT-IN--------ISASLEGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L K       +      I++SF   +  +    +V   + G
Sbjct: 57  APSQLENEVARKIEDKLTSLSKLDHVTTKITDGAVSISVSFKLEKDPQAALSEVRNAVDG 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +     +  +     +++    +         + S  +  +    +   +   
Sbjct: 117 ARASLPAEMAAPTVSKSDAAASALLTYAASSTA--MDEQDLSWFVDNELSKALLSVKGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I  ++  + DP+ +  +  T   +S         + G    +   R S     
Sbjct: 175 KVERIGGIDREVRIDLDPALMAGMGLTAETVSTQLKAMQRDRSGGQGDIGGQRQSSRTLV 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +++ + +                         RR        +    A      
Sbjct: 235 GVGSVQDVAALTITT--------------------GDGRRVRLDQIARVTDGAADRSAYA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +     +     S    +       A   A    +KL       V     +   
Sbjct: 275 YLDGKPVIGVQITRAKGNSDVTVLHEVRRTVAAFAAAHPQVKLTEAS-NTVAPIEDNYEG 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V++  +  G+  LV+  ++ L++I T  ++ LLG +L + ++  + 
Sbjct: 334 SMSMLIEGALLAIVVVWWFLRDGRATLVSAAALPLSIIPTFGVIWLLGYSLNVVTLLALS 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  ++ F +           +  +    +   +   F  
Sbjct: 394 LVVGILVDDAIVEIENIERHLRMGKTPFQAAMQAADEIGLAVIATTFALVAVFLPTAFMS 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T  +++L+S+  A  +   M  ++++       D   ++R+       
Sbjct: 454 GIPGLIFRQFGVTASVAVLMSLLVARLLTPMMAAYLMKAASHIDHDSARMTRYLRWVRAC 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                  R   + + +   +    +         +  K   Q+ +       L   R+ +
Sbjct: 514 L---TGRRRTMLAVGVFLVLSVAMVAVLKTGFMPLQDKSQTQVKLELAPGATLEQSRTTV 570

Query: 599 ESLQIGDISFQNFDG 613
              +          G
Sbjct: 571 LRAEALIRQVSEVKG 585



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 73/249 (29%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     R V L  +    +                  +   + +    V     +    
Sbjct: 246 TITTGDGRRVRLDQIARVTDGAADRSAYAYLDGKPVIGVQITRAKGNSDVTVLHEVRRTV 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                  P   +         I         + +  + +A+++  W        L +   
Sbjct: 306 AAFAAAHPQVKLTEASNTVAPIEDNYEGSMSMLIEGALLAIVVVWWFLRDGRATLVSAAA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I  T G   L G   N+  + A+  ++G  V+D +V  + +    +      +   
Sbjct: 366 LPLSIIPTFGVIWLLGYSLNVVTLLALSLVVGILVDDAIVEIENI---ERHLRMGKTPFQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     + T+ A     LP A   G        F +  +  ++++   +  + 
Sbjct: 423 AAMQAADEIGLAVIATTFALVAVFLPTAFMSGIPGLIFRQFGVTASVAVLMSLLVARLLT 482

Query: 817 APILLFIYD 825
             +  ++  
Sbjct: 483 PMMAAYLMK 491



 Score = 44.7 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 4/158 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
              E    +   EL +   + + I    +   + + F  +      +  L L +   L  
Sbjct: 832 HQVEQGELQNMGELFQSFGLAMAIGVFCVYAVLVLLFHDFLQPATILCALPLSLGGALFS 891

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +  + F++ A+  +L L+G    + +++ +     M      +   + +  + ++   
Sbjct: 892 LLVTRMSFSMPALIGLLMLMGIVTKNSILLVE--YAIMARREHGMRRLEALMDACHKRAR 949

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             + T++A    +LP    G     SF  PMA  ++  
Sbjct: 950 PILMTTIAMGAGMLP-NALGLGAEPSFRQPMAIVVIGG 986


>gi|313157792|gb|EFR57203.1| RND transporter, HAE1 family [Alistipes sp. HGB5]
          Length = 1059

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 74/698 (10%), Positives = 189/698 (27%), Gaps = 58/698 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   GL+      L    ++++P   P   +             +    
Sbjct: 9   RPVLASVISIVIVIAGLI-----GLATLPVEQYPDIAPPTVM-------------VRASY 50

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +Q       ++  + ++       S       +T+ F      +  A  V   
Sbjct: 51  PGASAETIQKSVIVPLEQAINGVEDMTYMTSSAAVGSASVTVYFRQGINADMAAVNVQNR 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  +  +  + T   +   + +               S  +      ++    
Sbjct: 111 ISRATGQLPSEVTQIGVTTMKRQTSMVKIFSLYSPDDSYDETFLSNYLKINIEPRVLRIA 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +     P  + Q     + ++      N        G       + 
Sbjct: 171 GVGEAFTLGA-DYSMRIWLKPDVMAQYKLIPSDVTAALAEQNIESATGTLGE---NSQNT 226

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            QY ++ +  +                 +    +   +            +I        
Sbjct: 227 FQYTMKYRGRL-------------MTPEEFGEIVLLAQPDGTILHLKDVADIELGSESYA 273

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                        +    A  +    +     L   + +           +        S
Sbjct: 274 YKGYTNGHPGVSTMVFQTAGSNATQVVNEINALLKEVESELPKGVAIAHLQSVNDFLYAS 333

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +    T      LV++V+++ +   +  L+   SI + ++ T A LS+ G ++ L ++ 
Sbjct: 334 INEVIKTLIEAILLVILVVYVFLQDIRSTLIPTISILVALVGTFAFLSVAGFSINLLTLF 393

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IG  VD  I+V E ++        S + +     S   S I  S +  +   + +
Sbjct: 394 ALVLAIGTVVDDAIIVVEAVQARFDVGYKSSYMATIDAMSGITSAIITSTLVFMAVFIPV 453

Query: 478 FFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKM 520
              GG +      F ITM +++ IS   A+++  A+   +                 +  
Sbjct: 454 AMMGGTSGVFYTQFGITMAVAVGISAINALTLSPALCALLLKPYLDENGEMRDNFAARFR 513

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           K+ +    +        + +           + + F+   + +  T       + +G I 
Sbjct: 514 KAFNSGFSAMINKYKHGVLLFIKHKWLMWSTLGLAFAALVLLMNTTKTGLVPDEDQGTIM 573

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       L+     +E +     +                    S     ++++   
Sbjct: 574 VNVTTAPGTSLAETHQVMEEVSARIKAIPQIRDFMQVAGYGMIAGQGSSYGMCIIKLKDW 633

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +       +       +  + +  +    I  V    I
Sbjct: 634 EERPEKTDAVNAVIGQIYGRTAD-IKNAQIFAVAPPMI 670



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 88/200 (44%), Gaps = 8/200 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                +L+ V+ ++ + V ++ +Q+          E+I+  I  +++  + + +++    
Sbjct: 301 NEINALLKEVESELPKGVAIAHLQSVNDFLYASINEVIKTLIEAILLVILVVYVFLQ--- 357

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++++ +  T  F ++ G   NL  + A++  IG  V+D ++V + ++   
Sbjct: 358 DIRSTLIPTISILVALVGTFAFLSVAGFSINLLTLFALVLAIGTVVDDAIIVVEAVQARF 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +   S     +   +++      + +++      +P+A+ GG+       F I MA  +
Sbjct: 418 DVGYKSSYMATI--DAMSGITSAIITSTLVFMAVFIPVAMMGGTSGVFYTQFGITMAVAV 475

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A +++ ++  +   +  
Sbjct: 476 GISAINALTLSPALCALLLK 495



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 50/148 (33%), Gaps = 6/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      I ++   +  +  F  + G+E N+     ++ LIG      +++ +      
Sbjct: 893  SFLIPFAVILSVPCGLLGSFLFAKMMGLENNIYLQTGIIMLIGLLSKTAILITE---YAA 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S       +    L   + T +     ++P+      G +   +    +  G+
Sbjct: 950  DRRAAGMSLTQAAVSAAKARLRPILMTVLTCVFGMIPLVFSHGVGANGNSTLGSGVVGGM 1009

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            +V   + +F+   + +     + K   +
Sbjct: 1010 IVGTLALLFLVPTLFIVFQTLQEKVKPL 1037


>gi|194335195|ref|YP_002016989.1| protein-export membrane protein SecD [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307672|gb|ACF42372.1| protein-export membrane protein SecD [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 624

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 124/475 (26%), Positives = 225/475 (47%), Gaps = 12/475 (2%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
           +      L    + +R+ + + G+    +    ++ I +       +  + + +    + 
Sbjct: 151 EKESEDALNRAKEIIRNRIDQYGVAEPVITTQGSRKIIIELPGVSDENRVRNLLKGTAKL 210

Query: 122 VNSKL--NVDPKKNLL--------VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
               L       + L                + +    ++    +   +  S+      +
Sbjct: 211 EFRLLREPEVMVRTLDRINSYLVQNQQNSAAVQVAPVPDSSSAALPAPVALSVPKPVAPV 270

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
                +      +G  +       EQ    +  LL  +  ++                 +
Sbjct: 271 APQSSATPLYDVIGVFQNGTAFTTEQSKEYVVSLLHRSDIVALFPPDSELLLAAKPDVGK 330

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                    YLV    E++G  +  A A F  +  +P V +S +  G  ++  +T  NIG
Sbjct: 331 NGEKLYSI-YLVRKGPELTGGVITEAKATFGSEGVQPEVLMSMNSEGTSKWARITGANIG 389

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K +A+VLDG V +APV+   IP+G + I+G  ++E A  L  +L+AG+LP  + I+EER 
Sbjct: 390 KRIAIVLDGAVYSAPVVQSKIPNGNSVINGIESLEEAKDLEIVLKAGALPAPVRIIEERT 449

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           VG  LG+D I  G  +I+ G V + +FM+V Y + G+ AD ++ LN+++ L++L+   A+
Sbjct: 450 VGPSLGADYIRAGMQSIIWGFVAVAVFMVVYYRQAGIAADVAVVLNILIVLSVLAGFNAS 509

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L+LP IAGIVL +G+AVD+N+L+ ERIREE  + +SV  ++  G+ RA+S+I DS++T L
Sbjct: 510 LSLPGIAGIVLTMGMAVDANVLIYERIREELAEGKSVITAVTQGYERAFSSILDSHVTTL 569

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            A  +L+ +G G ++GFA+T+ +    S+FTAI + R +   +     M      
Sbjct: 570 SAAFLLYTYGIGPIQGFAVTLMIGTSASLFTAIVVTREIFHLLFIKNLMSDKSFG 624



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 82/205 (40%), Gaps = 4/205 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  K   +     I     VGP +  + IR G+  +I   +A+ +++ + 
Sbjct: 421 ESLEEAKDLEIVLKAGALPAPVRIIEERTVGPSLGADYIRAGMQSIIWGFVAVAVFMVVY 480

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++    + A   ++L+I   L   A F    +L  +A ++  +G +V+  V++Y+R+R+ 
Sbjct: 481 YR-QAGIAADVAVVLNILIVLSVLAGFNASLSLPGIAGIVLTMGMAVDANVLIYERIREE 539

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       S    + +         + + +    +   +  +G   I  FA+ +  G   
Sbjct: 540 LAE---GKSVITAVTQGYERAFSSILDSHVTTLSAAFLLYTYGIGPIQGFAVTLMIGTSA 596

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++I +   I   ++     + +
Sbjct: 597 SLFTAIVVTREIFHLLFIKNLMSDK 621



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 100/239 (41%), Gaps = 43/239 (17%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM-------------------PK 41
           M+N  + ++L +++  + L    P +   ++  +  S                      K
Sbjct: 4   MKNKRFNLLLIAVVTLMALWSLWPTWSDYTLSKQLDSFASAQDSLKYVLNHREELENARK 63

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             + LGLDL+GG HLV+EVD+ D           +  + ++                   
Sbjct: 64  KSLKLGLDLKGGMHLVMEVDQVDLFEQKAWNKDGKFTAIMQNVRTKASQSDA-------- 115

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                    + D ++   +  N +L    +    +  +++EI      + +++    A+ 
Sbjct: 116 --------KVIDLISSEFKSQNIRL---SRYFYDIRNSDQEIV-----SKLEKESEDALN 159

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
           ++ EIIR RIDQ G++E  I   GS +I+I+LPG  D +R+R LL  TAK+ F  +   
Sbjct: 160 RAKEIIRNRIDQYGVAEPVITTQGSRKIIIELPGVSDENRVRNLLKGTAKLEFRLLREP 218


>gi|290968435|ref|ZP_06559974.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Megasphaera genomosp. type_1 str. 28L]
 gi|290781431|gb|EFD94020.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Megasphaera genomosp. type_1 str. 28L]
          Length = 1044

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/599 (11%), Positives = 159/599 (26%), Gaps = 49/599 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++   I  +G+L  +        + ++P+  P              H+     
Sbjct: 8   KRPVLAIVISLFITIMGVLALI-----TLPVAKYPNVTPPQ-----------VHVT--AS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG--IGVFSMRQIQNKITLS--FADSRFKENIADKVT 116
                   +     + +   L      + + S        TL   F      +  A  + 
Sbjct: 50  YVGADAEGISATVANTIERQLSGIDHLVSIESSSNDSGIYTLQALFDSGSNADMDAVNMQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V   L  +  +  +          ++                    +  +D +  
Sbjct: 110 NRINQVIPLLPQEVAQAGVSVQKSTTSMAMVFALESPHGTYDQTFMKSYAAQYFLDAVKG 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P ++     T   ++      N        G       
Sbjct: 170 VPGVGNVQEFGA-DYAMRIWLNPMKMAICKVTPMDVAAALRSQNIQAPVGTVGAMPAPAD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              QY +     +                 +    I                ++      
Sbjct: 229 QTYQYTLRANGRL-------------QTADQFRQLIIRANPEGTAVRLGDVADVQLGARD 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L        + +  A  +   T+     +    +          V   +     
Sbjct: 276 YTVYSNLNGHPAVGFMVALTADANAMQTVGKVREVMEKAQEKFPDDLTYKVVYDSTKFVK 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV  ++F+ +   +  L+   ++ ++++ T A   ++G ++   +
Sbjct: 336 ASIEEVLKTLIEALLLVAFIVFLFLQSPRSTLIPLMAVPVSLLGTFACFKIMGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IGL VD  I+V E +  E    N+    +  +      + +           V
Sbjct: 396 LFAMVLAIGLLVDDAIVVIEAVEYEIKYNNRPPKEATLVAMKNVQNPVIGVACVLAAVFV 455

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------ID 524
            + F GG +    R FA+T+ +S+ IS F A+++  A+   ++R     S          
Sbjct: 456 PVAFIGGMSGVLYRQFALTIAVSVGISAFVALTLTPALCTLLLREAPPDSTGKGIRGLFA 515

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                   L+           +   +   +   +  +  +F   L  G          +
Sbjct: 516 RFNYGFERLVDWYGGKLVHLKKHLALCFFVPVLLIGLTGVFFRALPTGFVPPEDNGFVI 574



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 81/241 (33%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +   +            +       +++     +  V +K  E  P 
Sbjct: 261 VRLGDVADVQLGARDYTVYSNLNGHPAVGFMVALTADANAMQTVGKVREVMEKAQEKFPD 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKT 707
                      K  +  I + +  +I + + +  I           L  +  + + +  T
Sbjct: 321 DLTYKVVYDSTKFVKASIEEVLKTLIEALLLVAFIVFLFLQSPRSTLIPLMAVPVSLLGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
              F + G   N   + A++  IG  V+D +VV + +    ++   +   ++    ++  
Sbjct: 381 FACFKIMGFSINTLTLFAMVLAIGLLVDDAIVVIEAV--EYEIKYNNRPPKEATLVAMKN 438

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  +       +P+A  GG   V+   FA+ +A  + ++A  ++ +   +   + 
Sbjct: 439 VQNPVIGVACVLAAVFVPVAFIGGMSGVLYRQFALTIAVSVGISAFVALTLTPALCTLLL 498

Query: 825 D 825
            
Sbjct: 499 R 499



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 64/162 (39%), Gaps = 6/162 (3%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            + +    ++ + + + +   ++ W      + ++   +     F  +  ++ N+     +
Sbjct: 873  QTLYIFALAFLFVFLILAALYESWKVPFAVLLSVPTGLFGASFFAYVLHLQNNIYFQIGI 932

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            L +IG +  + V++ +  +  +++ T  +     + ++    +   + TS A     LP+
Sbjct: 933  LAVIGLAAKNAVLIIEYAK--VRVETRGMDSVSAVIEAAKIRIRPIIMTSSAFVFGSLPL 990

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  G S   +  I + FG  VA    +F+   + L +  
Sbjct: 991  IASSGAGASSRITMGITVVFGTTVATLFGVFLIPMLFLSVQR 1032


>gi|83745616|ref|ZP_00942674.1| Transmembrane drug efflux pump [Ralstonia solanacearum UW551]
 gi|83727693|gb|EAP74813.1| Transmembrane drug efflux pump [Ralstonia solanacearum UW551]
          Length = 1048

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/537 (11%), Positives = 142/537 (26%), Gaps = 38/537 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATTLLMVAILLSGLVAYRMLPLSALPEVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F  S   +    +V   +   
Sbjct: 56  PDVMTSSITAPLERQFGQMPGLKQMTSSSSGGASVITLQFDLSLSLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +      + +L+   I        +    +  +   ++        
Sbjct: 116 GNLLPTDLPMPPIYSKVNPADAPILT-LAITSKTLPLPKLEDIVDTRVAQKLSQLPGIGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  +   +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRIQANTQALAALGLSIDDIRTAIGNANVNGAKGSFDGPLRASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                       +                 I            
Sbjct: 235 LRSAAE--------------------YSTMIVAYKNGAPIRLTDVAQIIDGAENSKLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A          +   +    +  A  L   L+          V          S +  
Sbjct: 275 ANATPAIILNVQRQPGANVIDVVNRAKALLPQLKDTLPATIDVAVLTDRTTTIRASVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFELMLSVALVVMVIFLFLRNVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I            +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYIEDGDPPMEAALKGAKQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   R FAIT+ +SILIS   ++++   M   ++R+           +      +
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLRHIPEPEQTRFYHAAGQFFDN 511



 Score = 81.7 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
           T   N  +         ++A +      +    + +   + S           + L  Q 
Sbjct: 228 TIDANDQLRSAAEYSTMIVAYKNGAPIRLTDVAQIIDGAENSKLAAWANATPAIILNVQR 287

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIAM 680
                   V+   K  + ++           V    +  +          + + ++ + M
Sbjct: 288 QPGANVIDVVNRAKALLPQLKDTLPATIDVAVLTDRTTTIRASVADVQFELMLSVALVVM 347

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           +I++++R      +     + L +  T G   L G   N   + A+    G+ V+D +V+
Sbjct: 348 VIFLFLR-NVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVM 406

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF 797
            + +    +         +   K   +     +  + +    ++P+   G   G +   F
Sbjct: 407 IENI---ARYIEDGDPPMEAALKGAKQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFREF 463

Query: 798 AIPMAFGIVVAASSSIFIAA 817
           AI +A  I+++A  S+ +  
Sbjct: 464 AITLAVSILISAVVSLTLTP 483



 Score = 43.1 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 92/274 (33%), Gaps = 15/274 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            +  +         +         V      ++     S       +     + +      
Sbjct: 758  DPQLQLGPQSLYDLRVASTGGQQVPLGAFATVVEQPGSLVVNHQGQFPSATISFNLARGA 817

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +    ++ +     EI   +++Q +        +  +   +  ++ + I M I + + ++
Sbjct: 818  SLGAAVDAINAAEQEIGLPASMQTSFQGAALAFQSSLSNELWLILAAIITMYIVLGVLYE 877

Query: 690  WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   I + +          +L   G +  + A+  ++ LIG    + +++ D   + 
Sbjct: 878  STIHPVTILSTLPSAG-VGALLSLLVSGKDMGIIAIIGIILLIGIVKKNAIMMIDFALE- 935

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                   ++ RD I ++        + T+MAA +  LP+ +    G  +     I M  G
Sbjct: 936  -AEREQGMAPRDAIYQACLLRFRPILMTTMAALLGALPLMLGNGVGSELRQPLGITMVGG 994

Query: 805  IVVAASSSIFIAAPILLF-------IYDWRAKNA 831
            ++V+   ++F    I L        +  WR + A
Sbjct: 995  LLVSQVLTLFTTPVIYLAFDSLGDRLRAWRERRA 1028


>gi|301631318|ref|XP_002944745.1| PREDICTED: nodulation protein nolG-like [Xenopus (Silurana)
           tropicalis]
          Length = 1054

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/681 (9%), Positives = 172/681 (25%), Gaps = 42/681 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN  +  ++      +GL       L +  +D FP+      +           +    
Sbjct: 8   LRNPVFATMVMLAFVVLGLFA-----LQRLKVDLFPNIDFPVVV---------VIVDYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + +           +  + + + F         A+ V   + 
Sbjct: 54  AAPEIVESEVTKKIEETVNAVAGIKAVTSRSYEGSSVVIIEFQLHIDGRKAAEDVREKVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH---AIEQSMEIIRQRIDQIGIS 177
            V   L  + K+  ++        +       D        A+E +    +    ++   
Sbjct: 114 SVRPNLRTEVKEPRVLRFDPASRPVWTMAVLPDPTRGTPLNAVELTSWADQTLKKRLENV 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                         ++    DP  L     T  +++      N                 
Sbjct: 174 RGVGAVNLVGATRREINIYLDPRALEAFGITPDQVATAVRNENQDLPLGAIRSLAQERVV 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V+   +                       I                 +      +
Sbjct: 234 QIDARVQRPEDFD--------------------RIIVARKNGAPVRVAQLARVHDGAQEL 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +    ++      A ++A   P         +      
Sbjct: 274 ESLALFNGARTLMLSVQKSQDENTIEVVDGLNQAVAEMQAELPPGVRLESVSDSARPIRV 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +    + T    A L ++++F+ +   +  ++   ++ + +I T   +   G T+ + ++
Sbjct: 334 AVDNVRQTLIEGALLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMYWFGFTVNMVTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + L +GL +D  I+V E I    +  +  + +   G       +  + ++ +   + +
Sbjct: 394 MALSLCVGLLIDDAIVVRENIVRHVQMGKGAYQAAMDGTQEIGLAVLATTLSIVAVFLPI 453

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G     F IT+  ++LISMF + ++   +               +   R +  
Sbjct: 454 GFMQGIIGKFFHEFGITIVAAVLISMFVSFTLDPMLSSIWHDPSIPTRGQPSAAPRTWYD 513

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                +               F    +     H L       G   L VL    +    +
Sbjct: 514 KTIGRVT--GWFDRTTVRLAEFYQRILRWSLAHKLTTLALAAGIFVLSVLMVPLLGTEFM 571

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                S    +         +    + +           V   +    T           
Sbjct: 572 PKADFSETTINFHTPVGSSLEATEAKARQVEALVRELPEVRHTLTTINTGNARGKMYATV 631

Query: 655 EIVGPKISRELIRKGIVGVII 675
            +              + V++
Sbjct: 632 YVRLVDREARTRNVDAMSVVL 652



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 57/157 (36%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + +LI       W   +    TL + +  T  F   FG   N+  + A+   +G 
Sbjct: 343 IEGALLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMYWFGFTVNMVTLMALSLCVGL 402

Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+  +                E     + T+++     LP+    G
Sbjct: 403 LIDDAIVV----RENIVRHVQMGKGAYQAAMDGTQEIGLAVLATTLSIVAVFLPIGFMQG 458

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      F I +   ++++   S  +   +    +D
Sbjct: 459 IIGKFFHEFGITIVAAVLISMFVSFTLDPMLSSIWHD 495



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 70/203 (34%), Gaps = 11/203 (5%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                      D  +   +   +++ +  +      +       K  +E     +  ++++
Sbjct: 822  MREVAINANADQRSTGEISADIRRALDTMTFPPGYRYQFGGSTKNMQESFGYALSALVLA 881

Query: 677  AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + + + +  +F  +   L  + +L L +   +    +FG   ++ ++  ++ L+G    
Sbjct: 882  IVFIYMILASQFKSFLQPLALMISLPLTLIGVVLALMMFGTALSMFSIIGIVMLMGLVTK 941

Query: 736  DKVVVYD---RMRKNMK----LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            + +++ D   R R             +     +  +    L   + T++A    +LP+A 
Sbjct: 942  NAILLVDFAIRARTEHHDDAGQTVPGLPREQALLLAARVRLRPILMTTLAMIFGMLPLAF 1001

Query: 789  W---GGSVIGSFAIPMAFGIVVA 808
                G          +  G++ +
Sbjct: 1002 ALSEGSEQRAPMGQSVIGGVITS 1024


>gi|121607346|ref|YP_995153.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
 gi|121551986|gb|ABM56135.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
          Length = 1051

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/688 (11%), Positives = 182/688 (26%), Gaps = 44/688 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I  +G+        P   +   P       I +   L GGS       
Sbjct: 9   QRPIGTTLLAIAILLVGIA-----VWPLLPVAPLPQVDFPT-IQVSASLPGGS------- 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +               +ITL F  +R  +  A  V   +  
Sbjct: 56  -PETMASNVAQPLERQFSLIAGLSQMTSQSALGSTQITLQFDLNRNIDAAALDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L                 S ++   ++        + +         QI       
Sbjct: 115 STGQLPTSLPNPPTFRKVNPADSPIMI-MSVQSDALPLTQVNDYADNILAQQISQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +  + DP+RL  L  +   +       + ++            +     
Sbjct: 174 LVSVHGQQKPAVRIQVDPARLATLGLSLEDIRGAIATTSVNQPKGTVDGAHQSFTVYTND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                      H   V +    +                 A+     
Sbjct: 234 QLLSA--------EPWNDMVLAYRHGAPVRVRDIGVAIDAPENNKIAAWAYAGAMAPSDD 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L          + +   +   T+         LRA                    S   
Sbjct: 286 TLANGRAIVLAITKQPGANVIETVGRIKAAMPRLRAAIPASVRVDTLIDRTQTIRASVGD 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      L+   ++ L ++ T  ++ L G +L   S+  + 
Sbjct: 346 VEFTLVLSIALVVMVIFVFLRNVAATLIPGITVPLALMGTAGVMYLAGYSLDNLSLMALT 405

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I        +   +   G S    TI   +++ +   + L   G
Sbjct: 406 IAVGFVVDDAIVMLENIYRHVEAGMTPMQAALKGASEIGFTIISISVSLVAVFIPLLLMG 465

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLI 534
              G   R FA+T+ L+I +S+  ++++   +           +  K   +       L 
Sbjct: 466 GIVGRLFREFAVTVTLTIAVSVIISLTLTPMLCSRFLKNSHAARHGKPYQLFERFFDILQ 525

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD---- 590
                   +  R   V +       ++ ++    +  G   +    + V           
Sbjct: 526 KGYQRSLDVVMRHQFVTLLTFIGTMAMTVMLFVAIPKGFFPQQDNGVIVGFAESAQDISS 585

Query: 591 ----------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                       +VR + +       +        NF + L+       A    +    +
Sbjct: 586 QAMQRHLLQVAEIVRKDPDVAGFAMSAGSTTFNTGNFFIALKPTDAGRTASASEIITRLR 645

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK 668
                +    +         +   L R 
Sbjct: 646 PQIAGIQGVNLFMQASQDINVGGRLART 673



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 66/152 (43%), Gaps = 7/152 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+I++++R      L    T+ L +  T G   L G   +  ++ A+   +
Sbjct: 350 LVLSIALVVMVIFVFLR-NVAATLIPGITVPLALMGTAGVMYLAGYSLDNLSLMALTIAV 408

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +     ++      K  +E     +  S++     +P+ + G
Sbjct: 409 GFVVDDAIVMLENI---YRHVEAGMTPMQAALKGASEIGFTIISISVSLVAVFIPLLLMG 465

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           G V      FA+ +   I V+   S+ +   +
Sbjct: 466 GIVGRLFREFAVTVTLTIAVSVIISLTLTPML 497


>gi|221065774|ref|ZP_03541879.1| acriflavin resistance protein [Comamonas testosteroni KF-1]
 gi|220710797|gb|EED66165.1| acriflavin resistance protein [Comamonas testosteroni KF-1]
          Length = 1066

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/617 (11%), Positives = 172/617 (27%), Gaps = 45/617 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+L           +   P                    +     
Sbjct: 10  RPIATSLLMVAVLISGILA-----YRLLPISALPEVDYPTIQ---------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + I+L FA     +    +V   +   
Sbjct: 56  PDVMTSNVTAPLERQFGQMPGLDQMSSTSSGGASVISLRFALDMSMDVAEQQVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     L +      + VL+   I       I  +  +  +   ++   +    
Sbjct: 116 TNLLPSDLPMPPLYSKVNPADAPVLT-LAISSPSLPVIRINDLVENRLAPKLSQVKGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P+ L     T   +       N                      
Sbjct: 175 VAIAGARRPAVRIQANPAALASFGMTLDDVRTAISAANVKTAKG---------------S 219

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +     S I  N    +     +  +   + + +      +   D     LA       
Sbjct: 220 FDGPNRASTIDANDQMQSAAEYRNLIIAFKNGNPVRLSDVAQTVDDAENTRLAAWSGTPE 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +          +   +   T++    L   L+          V          S    
Sbjct: 280 TGSKSAVILNIRRQPGANVIETVDAIKNLLPQLKETLPASVDVQVLTDRTVTIRASVKDM 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+F+ +      L+   ++ L++I T  ++ L G ++   ++  + +
Sbjct: 340 QFELALAIALVVMVIFLFLRSASATLIPSVAVPLSLIGTFGVMYLAGFSINNLTLMALTI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     K ++   +   G  +   TI    I+ +   + L F G 
Sbjct: 400 ATGFVVDDAIVMIENIARYVEKGEAPMQAALKGARQIGFTIISLTISLVAVLIPLLFMGD 459

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------------IDINP 527
             G     FAITM ++ILIS   ++++   +   ++R++                +    
Sbjct: 460 VVGRLFHEFAITMTVAILISAVVSLTLTPMLCARLLRHRPEGEKNQAQSKGLGAAVARFF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +      ++   +       +  +         +     G I     A++
Sbjct: 520 DKVIAGYGRMLTWVLDHSKLTWLVFIATLVVTVLLYFVVPKGFFPEQDTGTIAATTEADQ 579

Query: 588 PVDLSVVRSNLESLQIG 604
            +  + +    ++L   
Sbjct: 580 SISFAAMAERQQALAEH 596



 Score = 89.4 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 82/254 (32%), Gaps = 8/254 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  +          N                     +R Q           +  ++ +  
Sbjct: 254 VRLSDVAQTVDDAENTRLAAWSGTPETGSKSAVILNIRRQPGANVIETVDAIKNLLPQLK 313

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             +     +Q        I   +      + + I+ + M+I++++R      L     + 
Sbjct: 314 ETLPASVDVQVLTDRTVTIRASVKDMQFELALAIALVVMVIFLFLR-SASATLIPSVAVP 372

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +  T G   L G   N   + A+    G+ V+D +V+ + +    +      +     
Sbjct: 373 LSLIGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMIENI---ARYVEKGEAPMQAA 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            K   +     +  +++    ++P+   G   G +   FAI M   I+++A  S+ +   
Sbjct: 430 LKGARQIGFTIISLTISLVAVLIPLLFMGDVVGRLFHEFAITMTVAILISAVVSLTLTPM 489

Query: 819 ILLFIYDWRAKNAR 832
           +   +   R +  +
Sbjct: 490 LCARLLRHRPEGEK 503


>gi|167562237|ref|ZP_02355153.1| multidrug resistance protein MdtC [Burkholderia oklahomensis EO147]
          Length = 1099

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/622 (11%), Positives = 163/622 (26%), Gaps = 46/622 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL         Q  +   P       +             L    
Sbjct: 10  RPVATTLLALGIALAGLFA-----FVQLPVSPLPQVDFPTIM---------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSMSSVGNARIVLQFNLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMV-VSLTSKTASPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSLSGSANPAVRVELEPQALFHYGIGLEDVRAALSSANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G +      N          ++                 +   +  + +  +
Sbjct: 217 --KGAIEFGPNRYQLYTNDQASQASQYKNLVIAYRNHAAVSLADVSTVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S +  
Sbjct: 275 ANGERAVLVILYRSPGANIIETIDRVKAALPQLTAALPADIKVSPVLDRSRTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG +L   S+  +++
Sbjct: 335 EHTLLIAMSLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSLNNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLSRF 531
             G   R FAIT+ L+I +S+  ++++   M   +           +  + ++       
Sbjct: 455 IVGRLFREFAITLSLAIGVSLVVSLTLTPMMCARLLPEAHDPRDEGRFARGLERGFERMQ 514

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 ++      R   + +    ++     +      +     G +  G+ A++    
Sbjct: 515 RGYERTLSWALRHPRTILMTLVATIALNVFLYIVVPKGFFPQQDTGLMVGGIQADQTTSF 574

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
             ++     +     +  N   
Sbjct: 575 QAMKLKFTEMMRIVSANPNVAN 596



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 96/268 (35%), Gaps = 7/268 (2%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +    +   L+T+           + +    +  V L+ V + ++S++           
Sbjct: 219 AIEFGPNRYQLYTNDQASQASQYKNLVIAYRNHAAVSLADVSTVVDSVEDLRNLGLANGE 278

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               ++  +    + +     ++    ++T  +P     +  +   +  R  +      +
Sbjct: 279 RAVLVILYRSPGANIIETIDRVKAALPQLTAALPADIKVSPVLDRSRTIRASLADTEHTL 338

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I+   +++ +++  + W   L     + + I  T G   L G   N  ++ A++   G+
Sbjct: 339 LIAMSLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSLNNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---SRHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FAI ++  I V+   S+ +  
Sbjct: 456 VGRLFREFAITLSLAIGVSLVVSLTLTP 483



 Score = 44.7 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 92/215 (42%), Gaps = 7/215 (3%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  + + + + E+    TIQ +     +  ++ ++   + ++ +
Sbjct: 869  VATTISFNLPPGVSLSKATQAIYQTMAEVGVPPTIQGSFQGTAQAFQQSLKDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LAAVYIVLGILYESYIHPITILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D     +       S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFA---IDASRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAE 1045

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++V+   +++    + L++   R
Sbjct: 1046 LRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLR 1080


>gi|262164936|ref|ZP_06032674.1| protein-export membrane protein SecF [Vibrio mimicus VM223]
 gi|262173909|ref|ZP_06041586.1| protein-export membrane protein SecF [Vibrio mimicus MB-451]
 gi|261891267|gb|EEY37254.1| protein-export membrane protein SecF [Vibrio mimicus MB-451]
 gi|262027316|gb|EEY45983.1| protein-export membrane protein SecF [Vibrio mimicus VM223]
          Length = 300

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 141/279 (50%), Gaps = 6/279 (2%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R+    ISIL  + S+      GLN G+DF GG+    + +  V    +   L+ +    
Sbjct: 13  RYITGMISILLMVISLAAFAIKGLNMGLDFTGGMVTEAVIDSSVSKVQLIDQLQPVLGES 72

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           ++      E  +++R       +         +   +  I     I +  +VG ++ +EL
Sbjct: 73  VTVTPSGEEGRWVIRYPLAAEGTAPVD-----MASTLHHISEHVQIVSNSMVGSQVGQEL 127

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           + +G + ++I  +++L Y+  RF+W  A GA+  L+ D+   LGFFA+  +EFNLT  AA
Sbjct: 128 VDQGGLALLICLLSILGYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAA 187

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           VL ++GYS+ND +++ DR+R+ +     +    D+ D+++  T  R++ TS    +++  
Sbjct: 188 VLAVLGYSLNDSIIIADRIRELLLAKQKT-PTADINDQAVIATFSRTMVTSGTTLMTISA 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + GG+ +  FAI M  G++    SSI I   +  ++ 
Sbjct: 247 LWLMGGAPLQGFAIAMFIGVISGTWSSISIGTVLPEWLG 285


>gi|198274865|ref|ZP_03207397.1| hypothetical protein BACPLE_01024 [Bacteroides plebeius DSM 17135]
 gi|198272312|gb|EDY96581.1| hypothetical protein BACPLE_01024 [Bacteroides plebeius DSM 17135]
          Length = 1045

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/622 (12%), Positives = 172/622 (27%), Gaps = 58/622 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +GL+      L Q  +++FP   P               + +    
Sbjct: 9   RPILSGVISVAIVIVGLI-----GLSQLPIEQFPDIAPPT-------------VNVSATY 50

Query: 63  DDFVNGF-LQMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                   ++     L   L   E +   +          I + F      +     V  
Sbjct: 51  TGANAETVMKSVITPLEEELNGVENMMYMTSTATNTGSASINVYFKQGTDPDMSVVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K+ +     +  S+             A   +  +      ++   
Sbjct: 111 RVASAQGLLPAEVTKSGVTVRKRQSNSLKAISLYSPDDSFDANFLTNYMKINIEPRLSRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP R+ Q     + +       N        G        
Sbjct: 171 AGVGDVNIWGA-SYSMRIWLDPQRMAQYGLMPSDIETVLNEQNVESPTGTLGAESANTFQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                     +       +                 I       
Sbjct: 230 YVLKYRGR----------------YEEEEDFGNMVIKSLPSGDVLRLKDVARIEMGAENY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         + +  +  + N  I+    + A + A      +             
Sbjct: 274 AMLSETNGHPGANCMTAQTSGSNANEIIKEMDKVTADISASLPKGMVLADITSTKDFLDA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T  +   LV++V++  +   +  L+   +I +++I T A L ++G +L L ++
Sbjct: 334 SIANVVETLFVAILLVILVVYFFLHDFRATLIPSLAIVVSLIGTFAFLYIVGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG  VD +I+V E ++    +   S + +     S   S +  + I  +   + 
Sbjct: 394 FALVLVIGTVVDDSIVVVEAVQARFEEGYTSAYTATVDAMSGLSSALMTTTIVFMAVFIP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------------KK 519
           + F G   G     F +TM +++ IS+  A+++  A+   I+R               + 
Sbjct: 454 VSFMGGTTGTFYTQFGLTMAVAVAISLLNAMTLSPALCALIMRPRANVGQGEKLGFSDRF 513

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
             + D +           ++  F   +     I+I      + +  T       +  G I
Sbjct: 514 HYAFDTSFRHLQQKYMTGVSFLFHHKKLAVGSIAIAVIALLVLMSITKTGLVPQEDMGTI 573

Query: 580 QLGVLANRPVDLSVVRSNLESL 601
            + V      +L      ++ +
Sbjct: 574 NINVQTAPGTNLEETGHVMDEV 595



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 94/257 (36%), Gaps = 6/257 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   +   + +   + L  V       +   +  +         +  Q    ++    + 
Sbjct: 244 FGNMVIKSLPSGDVLRLKDVARIEMGAENYAMLSETNGHPGANCMTAQTSGSNANEIIKE 303

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
           ++ V   I+  +P   +              I   +  + ++ + +++ ++     +   
Sbjct: 304 MDKVTADISASLPKGMVLADITSTKDFLDASIANVVETLFVAILLVILVVYFFLHDFRAT 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     +++ +  T  F  + G   NL  + A++ +IG  V+D +VV + ++   +   T
Sbjct: 364 LIPSLAIVVSLIGTFAFLYIVGFSLNLLTLFALVLVIGTVVDDSIVVVEAVQARFEEGYT 423

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             S       +++      + T++      +P++  GG+       F + MA  + ++  
Sbjct: 424 --SAYTATVDAMSGLSSALMTTTIVFMAVFIPVSFMGGTTGTFYTQFGLTMAVAVAISLL 481

Query: 811 SSIFIAAPILLFIYDWR 827
           +++ ++  +   I   R
Sbjct: 482 NAMTLSPALCALIMRPR 498



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 64/222 (28%), Gaps = 18/222 (8%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                   S    + +E V K                                ++     +
Sbjct: 829  TPADGYSSGQALKAIEEVAKATLPEGYGYEFGGMSREEASTGNTTT------LVFIVCIV 882

Query: 681  LIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             IY+    +          I ++   +  +  F   +G+E N+     ++ LIG      
Sbjct: 883  FIYLILCALYESLMIPFAVILSVPFGLMGSFLFAKFWGLENNIYMQTGLIMLIGLLAKTA 942

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ +            +S       +    L   + TSM     +LP+      G +  
Sbjct: 943  ILLTE---YASDRRRQGMSIPAAAMWAAKARLRPILMTSMTMIFGMLPLMFAHGVGANGN 999

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILL---FIYDWRAKNARI 833
             S  +    G++      +F+   + +   ++ ++     +I
Sbjct: 1000 ISVGVSTVGGMLFGTIGLLFVVPSLFIVFQYLQEYFQPKKKI 1041


>gi|317476315|ref|ZP_07935564.1| AcrB/AcrD/AcrF family protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316907341|gb|EFV29046.1| AcrB/AcrD/AcrF family protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1048

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/553 (12%), Positives = 164/553 (29%), Gaps = 41/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENVLNSVSDLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSELPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP +L     +   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPYKLEAYNLSIETISSIIGAENRNIPGGNFDIGNETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E++ + +                            +      I   +       
Sbjct: 232 EFDDSGELANVVVGTY--------------------NGATVYLRDVAKIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISKKVQDALPRLQKNLPSDVKLGVIVDTSENILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAISGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQASVHGTNEVAISVVASTLTMIAVFFPLTMVT 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G +    +     M   + +S  +A+++   +    +   +K   +            D 
Sbjct: 452 GMSGVLFKQLGWMMCAIMFVSTVSALTLTPMLCSQLLRLQRKQSKVFRIFFGPIEHALDG 511

Query: 538 IAIQFMRARFWGV 550
           +   + R   W V
Sbjct: 512 LDNWYARMLNWAV 524



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 94/249 (37%), Gaps = 7/249 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V   +++++       N   +   +V  +    +SV  ++ ++    ++ + +P 
Sbjct: 252 VYLRDVAKIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISKKVQDALPRLQKNLPS 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                  +   +     I      V+ + + ++I +++   +W   L    T+ L +  +
Sbjct: 312 DVKLGVIVDTSENILNTIDSLTETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIAS 371

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             + A+ G   N+ +++++   IG  V+D +VV + +             +       NE
Sbjct: 372 FIYLAISGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQASVHGTNE 428

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V +++       P+ +     G +       M   + V+  S++ +   +   + 
Sbjct: 429 VAISVVASTLTMIAVFFPLTMVTGMSGVLFKQLGWMMCAIMFVSTVSALTLTPMLCSQLL 488

Query: 825 DWRAKNARI 833
             + K +++
Sbjct: 489 RLQRKQSKV 497



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 77/242 (31%), Gaps = 8/242 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              +L  +            ++  +V +      +     V            P       
Sbjct: 792  IKDLGKVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNAIIDKLEKPSDITIQV 851

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                          G +GV+I  + + I +  +F+   +    I ++   ++  L    +
Sbjct: 852  SGSFEDQQDSFRDLGTLGVLI-IVLVFIVMAAQFESLTYPFILILSVPFAMSGVLMALFI 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++ ++   + LIG  V + +V+ D     +       S  + +  +    L   +
Sbjct: 911  TNTTLSVMSLLGSIMLIGIVVKNGIVLID---YTILCRERGQSVLNAVVTAGKSRLRPVL 967

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+M   + ++PMAV    G  +    AI +  G+ V+   ++     +         K 
Sbjct: 968  MTTMTTILGMIPMAVSTGQGSEMWSPMAIAVIGGLAVSTILTLIYVPTMYCIFGGVGIKR 1027

Query: 831  AR 832
             R
Sbjct: 1028 QR 1029


>gi|119468714|ref|ZP_01611766.1| hypothetical protein ATW7_02922 [Alteromonadales bacterium TW-7]
 gi|119447770|gb|EAW29036.1| hypothetical protein ATW7_02922 [Alteromonadales bacterium TW-7]
          Length = 1050

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/508 (11%), Positives = 139/508 (27%), Gaps = 36/508 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G +        Q  +  +P  +P   +                 
Sbjct: 9   QRPIFAAMLSLVILIAGGISLF-----QLPVSEYPEVVPPTVVVT-------------AS 50

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L   +   E +     +   +    +T++FA     +    +V 
Sbjct: 51  YPGANPTVIAQTVATPLEQEINGTENMLYMFSQATSDGRMTLTVTFALGTDLDRAQVQVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  + ++  +V         ++      +        S        D+I  
Sbjct: 111 NRVNSALPRLPEEVQRLGVVAEKSSPDLTMVVHLYSPEKSHDTAYLSNYADLYIKDEIAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P  L     T   +       N        G + + + 
Sbjct: 171 LPGVGDLRLFGAGKYAMRVWLNPDALAARELTATDVITALRSQNQQVAAGSLGAQPVSND 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q L+  K  ++ I              +    I       +         +      
Sbjct: 231 SQFQVLLNVKGRLNSIE-------------EFEQVIIKVGDEGQITRLTDIARVELGQDS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L +          +   +     +      A L           +         
Sbjct: 278 YSLRAELDSQPALAMPIFQRPGSNAIELSDQVRETMARLSKDFPEGVEYDIVYDPTVFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           GS      T      LV+IV+ + +   +  ++   ++ +++I T A++  LG ++   S
Sbjct: 338 GSIDAVIATLLEAIVLVVIVVIVFLQTWRASIIPLIAVPISLIGTFAVMQWLGVSINTLS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +     +  S   +  +  S     I    +      + 
Sbjct: 398 LFGLVLAIGIVVDDAIVVVENVERNIEQGLSPLEATRVAMSEVTGPIIAIALVLCAVFIP 457

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAI 504
             F  G + + +        + ++ +AI
Sbjct: 458 TAFITGLSGQFYKQFALTITISTVISAI 485



 Score = 45.1 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 81/227 (35%), Gaps = 17/227 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            D   +R+ L+S     +      G     +  Q +   +       E V+  I     +
Sbjct: 275 QDSYSLRAELDSQPALAMPIFQRPGSNAIELSDQVRETMARLSKDFPEGVEYDIVYDPTV 334

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + V   +   ++   IV ++               W  ++  +  + + +  T 
Sbjct: 335 FVRGSIDAVIATLLEAIVLVVIVVIV-----------FLQTWRASIIPLIAVPISLIGTF 383

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                 G+  N  ++  ++  IG  V+D +VV + + +N+      +S  +    +++E 
Sbjct: 384 AVMQWLGVSINTLSLFGLVLAIGIVVDDAIVVVENVERNI---EQGLSPLEATRVAMSEV 440

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
            G  +  ++      +P A      G     FA+ +    V++A +S
Sbjct: 441 TGPIIAIALVLCAVFIPTAFITGLSGQFYKQFALTITISTVISAINS 487



 Score = 41.6 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 7/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L      G + N+    A++ L+  +  + +++ +  +   
Sbjct: 903  SLRLPLAIILIVPMTIFSALLGVWFVGSDNNIFTQIALIVLVALASKNAILMVEFAKD-- 960

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                T +S  D I  +    L   + TS+A    V+P+ V            M   +   
Sbjct: 961  -KNDTGLSHIDAILAACRMRLRPILMTSIAFTAGVIPL-VLATGAGAEMRHAMGNAVFSG 1018

Query: 809  AS-SSIF--IAAPILLFIYDWRA 828
                ++F  +  P+   +   + 
Sbjct: 1019 MIGVTVFGLLFTPVFYMLVVKKK 1041


>gi|226944952|ref|YP_002800025.1| AcrB/AcrD/AcrF family acriflavin resistance protein [Azotobacter
           vinelandii DJ]
 gi|226719879|gb|ACO79050.1| acriflavin resistance protein, AcrB/AcrD/AcrF family [Azotobacter
           vinelandii DJ]
          Length = 1035

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 162/565 (28%), Gaps = 38/565 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I  +G L      +       FP+                    L    
Sbjct: 10  RPVATLLLSVAILLVGALSFGLLPVSPLPKMDFPAIT--------------VEASLAGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +           Q   +I + F   R  +  A +V   +   
Sbjct: 56  PQIMASSVATPLERALGGIAGISEMTSRSSQGSTRINILFDIGRDIDAAAREVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    +            + ++   ++   +    +           ++       Q
Sbjct: 116 RTLLPSGMRSMPTYRKINPSQAPIMV-LSLTSPVLDKGQLYDVASSIVAQKLSQVSGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P  L Q      ++       N  +                   
Sbjct: 175 VQVGGSSLPAVRIELEPRLLDQYNIALDEVRQAIAAANVRRP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G       A+   +       +                 +   L    +   
Sbjct: 217 --KGAVEDGERHWQVQASDQLERAADYRPLVIRYQNDGPVRLSDVARVHDGLEDRYNSGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +A  +   TI        MLRA         V          +    
Sbjct: 275 YNDEDAVLVIVYRQADANILETITEIRDRLPMLRAVIPASVELEVAMDRSPVIRATLHEA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+   + + +  L+   ++ ++++ + A++ L G +L   S+  +++
Sbjct: 335 ERTLLIAVALVILVVLAFLGHWRAALIPALAVPVSLVGSFAVMYLWGFSLNNLSLMALII 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             GL VD  I+V E I     + +    +   G      T+   N++ ++  + + F GG
Sbjct: 395 ATGLVVDDAIVVLENIARHIEEGEKPLAAALKGSREVGFTLLSMNLSLVVVFLSILFMGG 454

Query: 483 ---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R F+IT+ ++ILIS+  ++++   +    ++  +              +   + 
Sbjct: 455 IIERLFREFSITLAVAILISLLVSLTLTPMLCARWLKSGQEARAPGRLGRFAGRLQARVL 514

Query: 540 IQFMRARFWGVGISILFSICSICLL 564
             + R+  W +  S L  +  +  +
Sbjct: 515 AGYARSLDWALRHSTLMLVGLLATM 539



 Score = 85.9 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 86/250 (34%), Gaps = 7/250 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMV 638
            +    + PV LS V    + L+    S    D +   ++  +    +     T + + +
Sbjct: 245 VIRYQNDGPVRLSDVARVHDGLEDRYNSGFYNDEDAVLVIVYRQADANILETITEIRDRL 304

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
                 I     ++      P I   L       +I  A+ +L+ +     W  AL    
Sbjct: 305 PMLRAVIPASVELEVAMDRSPVIRATLHEAERTLLIAVALVILVVLAFLGHWRAALIPAL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  +     L+G   N  ++ A++   G  V+D +VV + +    +         
Sbjct: 365 AVPVSLVGSFAVMYLWGFSLNNLSLMALIIATGLVVDDAIVVLENI---ARHIEEGEKPL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
               K   E     +  +++  +  L +   GG +      F+I +A  I+++   S+ +
Sbjct: 422 AAALKGSREVGFTLLSMNLSLVVVFLSILFMGGIIERLFREFSITLAVAILISLLVSLTL 481

Query: 816 AAPILLFIYD 825
              +      
Sbjct: 482 TPMLCARWLK 491



 Score = 44.3 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 99/257 (38%), Gaps = 8/257 (3%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             + V+ +  + + +       L + +   Q+        +     PG S  +    + ++
Sbjct: 769  MVQVITDDGLRVPLSAFARWELGLEEDRVQHQGQFAAENISYSVAPGYSALEAN--QAIE 826

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            + +  +   + +Q          ++  +   + ++ + + + I + I ++ +   L  ++
Sbjct: 827  QAVARVGLPTEVQGILGGTSGALQQAQKAQPLMILGALMVVYIVLGILYESYVHPLTILS 886

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            TL       L    L G EF+L ++  +  LIG    + +++ D            +S  
Sbjct: 887  TLPSAGVGALLAIELVGDEFSLISLLGLFLLIGVVKKNAILMID--LALHLERQERLSPE 944

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFI 815
            + I ++        + T+++A +  +P+ +    G  +     I +  G+V++   +++ 
Sbjct: 945  ESIRRACLLRFRPILMTTLSAILGAVPLLLDTAEGAEMRRPLGIAIVGGLVLSQLLTLYS 1004

Query: 816  AAPILLFIYDWRAKNAR 832
               + LF    R +  R
Sbjct: 1005 TPAVYLFFDRLRHRFNR 1021


>gi|134295682|ref|YP_001119417.1| multidrug efflux protein [Burkholderia vietnamiensis G4]
 gi|134138839|gb|ABO54582.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia vietnamiensis G4]
          Length = 1045

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/615 (11%), Positives = 164/615 (26%), Gaps = 41/615 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G             + ++P   P              +       
Sbjct: 8   RPVFAWVIALFILLGGGFAI-----RALPVAQYPDIAPPVV---------SIYASYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          S       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSASSSAGSASLYLTFKQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +++L    ++  +      +   ++     D      ++         +  +   +   +
Sbjct: 114 DARLPEPVRRAGIQVEKAADNIQLVVSLTSDDGRMTDVQLGEYASANVVQALRRVDGVGR 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPDKLAGHGVTASDIASAVRAHNARVTIGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +      +      +            
Sbjct: 233 VFADAPL-------------KTPADFGAIALRTQPDGSALYLRDVARVEFGGNDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T          L A   P     +          S +  
Sbjct: 280 VNGKVATGMGIKLAPGSNAVATERRVRAAMDELSAYFPPGVKYQIPYETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+    + + +  T  ++  LG ++ + ++ G+VL
Sbjct: 340 VTTLIEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGVMQALGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +      +    + +      +    I    +      V + FFG
Sbjct: 400 AIGILVDDAIVVVENVERLMVEERLEPYEATVKAMQQISGAIVGITVVLTSVFVPMAFFG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   R FA+ + +SI  S F A+S+  A+   +          +     + +     
Sbjct: 460 GAVGNIYRQFALALAVSIAFSAFLALSLTPALCATLLKPVDGGHHDKRGFFGAFNRFVAR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R   W V    L +   + L          + +G   + V+  +  
Sbjct: 520 ATQRYATRVGTMLARPLRWLVVYGALTAAAVLMLTQLPSAFLPDEDQGNFMVMVIRPQGT 579

Query: 590 DLSVVRSNLESLQIG 604
            L+    ++  +   
Sbjct: 580 PLAETMRSVREVDAY 594



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 71/196 (36%), Gaps = 8/196 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             ++ +       V       T         +++   I   ++  + M +++        
Sbjct: 307 AAMDELSAYFPPGVKYQIPYETSSFVRVSMNKVVTTLIEAGVLVFLVMFLFMQ---NLRA 363

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  T G     G   N+  +  ++  IG  V+D +VV + +     +  
Sbjct: 364 TLIPTLVVPVALAGTFGVMQALGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERLMVE 421

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +   +   K++ +  G  V  ++      +PMA +GG+V      FA+ +A  I  +A
Sbjct: 422 ERLEPYEATVKAMQQISGAIVGITVVLTSVFVPMAFFGGAVGNIYRQFALALAVSIAFSA 481

Query: 810 SSSIFIAAPILLFIYD 825
             ++ +   +   +  
Sbjct: 482 FLALSLTPALCATLLK 497



 Score = 50.8 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/210 (11%), Positives = 70/210 (33%), Gaps = 9/210 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    S A           +  +              +   E +      ++ +   ++
Sbjct: 818  SFTINGSAAPGHSSGEAMAALERLAATLPAGIGHAWSGQSFEERLSGAQAPMLFALSVLV 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W      +  + L +   +    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWSIPFAVMLVVPLGVIGAVLGVTLRAMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ +  +    L    +   D   ++    L   V TS+A  + VLP+A   G+  G+  
Sbjct: 938  LIVEVAKD---LVAQRMPLIDAAREAARLRLRPIVMTSLAFGVGVLPLAFASGAASGAQM 994

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +  G++ A   ++F+     + +  
Sbjct: 995  AIGTGVLGGVITATVLAVFLVPLFFVMVGR 1024


>gi|167574177|ref|ZP_02367051.1| Hydrophobe/amphiphile efflux-1 pump, HAE1 [Burkholderia
           oklahomensis C6786]
          Length = 516

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/517 (14%), Positives = 145/517 (28%), Gaps = 33/517 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  I+   I   G+L       PQ  + ++P   P   +                  
Sbjct: 8   RPVFAWIVALAIVVAGMLAI-----PQLPVAQYPRLAPPRIV---------ISATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V+G +    +E             S     N +I ++FA     +     V   L+ 
Sbjct: 54  TETVDGDVGSIIEESLDGADGLLYYETSSDGHGNLEIDVTFATGADPDLALVDVQNRLKQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L     +  +         ++L           + + S  + R  + ++  +    
Sbjct: 114 IEPRLPQQVVQQGIGVFKATNTFLMLVALTSTDGTRDSAQLSDYLSRYVLRELKRAPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP +LR+       +       N +      G            
Sbjct: 174 SAQLWDA-DEALRIWLDPMKLREYGLGADDVIAAVAAQNAAVTAGAIGDAPFAAGQQLSA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K +++                +    +   +             +           
Sbjct: 233 SVIVKGQLA-------------SPAEFGQIVLKSKPDGSVVRLADVARVELGRDDYSFSS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L              + +   T        A L     P     +          +   
Sbjct: 280 RLNGQAAATVGIQLGPRGNALETSNAIRARLAELSKRLPPGVAVDIPFDGAHFVRIAIDE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+++ +   +  LV    I + ++     +   G ++ + ++ G+V
Sbjct: 340 VVLTLVEAIVLVFGVMWLFLRDLRCTLVPTIVIPVTLMGAFVAMWAFGLSINVFTMFGLV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +  S   +      R    I           V + FF
Sbjct: 400 LAIGILVDDAIVVVESVHRVMEEERVSPREATRRAMKRIVGAIVGVTAVLTAVFVPMAFF 459

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               GG  R FA+ M  S+L+S F A+S+  A+   +
Sbjct: 460 PGGVGGIYRQFAVAMIASMLVSSFMALSLTPALCANL 496



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 91/238 (38%), Gaps = 12/238 (5%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V            S +        +       G+++  +  +     ++++ +P 
Sbjct: 260 VRLADVARVELGRDDYSFSSRLNGQAAATVGIQLGPRGNALETSNAIRARLAELSKRLPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +    G    R  I + ++ ++ + + +   +W+  +     L     + + +   
Sbjct: 320 GVAVDIPFDGAHFVRIAIDEVVLTLVEAIVLVFGVMWLFLRDLRCTLVPTIVIPVTLMGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKS 764
                 FG+  N+  +  ++  IG  V+D +VV +   R+ +  ++     S R+   ++
Sbjct: 380 FVAMWAFGLSINVFTMFGLVLAIGILVDDAIVVVESVHRVMEEERV-----SPREATRRA 434

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +   +G  V  +       +PMA + G V      FA+ M   ++V++  ++ +   +
Sbjct: 435 MKRIVGAIVGVTAVLTAVFVPMAFFPGGVGGIYRQFAVAMIASMLVSSFMALSLTPAL 492


>gi|77362282|ref|YP_341856.1| AcrAB-TolC efflux pump [Pseudoalteromonas haloplanktis TAC125]
 gi|76877193|emb|CAI89410.1| similar to AcrAB-TolC efflux pump [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 1050

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/508 (12%), Positives = 139/508 (27%), Gaps = 36/508 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I   G +        Q  +  +P  +P   +                 
Sbjct: 9   QRPIFAAMLSLIILIAGGISLF-----QLPVSEYPEVVPPTVVVT-------------AS 50

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L   +   E +     +   +    +T++FA     +    +V 
Sbjct: 51  YPGANPTVIAQTVATPLEQEINGTENMLYMFSQATSDGRMTLTVTFALGTDLDRAQVQVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  + ++  +V         ++      +        S        D+I  
Sbjct: 111 NRVNSALPRLPQEVQRLGVVAEKSSPDLTMVVHLYSPENTHDTAYLSNYADLNIKDEIAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P  L     T + +       N        G + + + 
Sbjct: 171 LSGVGDIRLFGGGKYSMRVWLNPDALASRELTASDVVSALRSQNQQVAAGSLGAQPISND 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q L+  K  ++ I              +    I       +         +      
Sbjct: 231 SQFQILLNVKGRLNSIE-------------EFEQVIIKVGEQGQLTRLSDIARVDLGQDT 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +      A L           +         
Sbjct: 278 YALRAELDNQPALAMPIFQRPGSNAIELSDQVRETMARLAKDFPTGVEYDIVYDPTVFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           GS      T      LV+IV+ + +   +  ++   ++ +++I T A++ LLG ++   S
Sbjct: 338 GSIDAVITTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSLIGTFAVMQLLGVSINTLS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +     K  S   +  +  S     I    +      + 
Sbjct: 398 LFGLVLAIGIVVDDAIVVVENVERNIEKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIP 457

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAI 504
             F  G + + +        + ++ +A 
Sbjct: 458 TAFITGLSGQFYKQFALTITISTIISAF 485



 Score = 44.7 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 70/188 (37%), Gaps = 9/188 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      +  + K     V    + +  +        +I   +  + +  I +++++   
Sbjct: 306 SDQVRETMARLAKDFPTGVEYDIVYDPTVFVRGSIDAVITTLLEAIALVVIVVIVFLQTW 365

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + +  T     L G+  N  ++  ++  IG  V+D +VV + + +N
Sbjct: 366 RASIIPL---IAVPVSLIGTFAVMQLLGVSINTLSLFGLVLAIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
           +      +S  +    +++E  G  +  ++      +P A      G     FA+ +   
Sbjct: 423 I---EKGLSPLEATRVAMSEVTGPIIAIALVLSAVFIPTAFITGLSGQFYKQFALTITIS 479

Query: 805 IVVAASSS 812
            +++A +S
Sbjct: 480 TIISAFNS 487


>gi|320093775|ref|ZP_08025622.1| protein-export membrane protein SecF [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979276|gb|EFW10772.1| protein-export membrane protein SecF [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 373

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 13/270 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  I+F GG Q  V        S     +    +   +     G     ++      DS+
Sbjct: 63  NRSIEFTGGSQFDVTNVADQSESTATRAVTGTGLVSSAKVTRVGSTGVRIQT-----DSL 117

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
              +   +           S    +  +GP     +  K    + I    + + + + F+
Sbjct: 118 DTAQTATVRSALAGAYGVDSADVASSSIGPSWGSAVTTKAAQSLAIFMALVALLMTVYFR 177

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  A  A+  L+ DI  T+G FA+   E +   V   LT++GYS+ D VVV+D++R+  
Sbjct: 178 SWRMAASALLALLHDIAVTVGVFAIAQAEVSPATVIGFLTILGYSLYDTVVVFDKVRELT 237

Query: 749 KL--YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-----VWGGSVIGSFAIPM 801
                    +F + ++ ++N+T+ RS+ TS+ A + V  +      + G   +   ++ +
Sbjct: 238 ADVYDQKHYTFAEFVNLAVNQTMVRSINTSVVALLPVGSILLIGSVLLGTGTLTDISLAL 297

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G++    SSIFIA+P+L+   +   +  
Sbjct: 298 FIGMIAGTYSSIFIASPLLVTFQEMSRRTQ 327


>gi|192292338|ref|YP_001992943.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
 gi|192286087|gb|ACF02468.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
          Length = 1045

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/599 (12%), Positives = 163/599 (27%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I  +GL+       P   +   P                     L   
Sbjct: 11  RYPIATSLLMAGILFLGLIA-----YPALPVAPLPQVDFPTIQ---------ISASLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       +T+ F  +R  +  A+ V   +  
Sbjct: 57  SPETMASSVATPLERQLAQIPGISQMTSTSSLGSTAVTIQFDLNRNIDAAANDVQAAINA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              + +L   +           S     +   QI       
Sbjct: 117 AGGQLPKNLPTPPTYRKVNPADAPILI-LSATSDTLPLTTVSDNADAKIAQQISQITGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  + DP++L     +   +     +                D+    Y
Sbjct: 176 QVFIGGQQKPAIRIQVDPAKLMTKGLSLEDVRAQIAITTVDSPKGTL------DAPNRSY 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +++                K   D+                +            
Sbjct: 230 TIYANDQLT--------------ESKDWNDVILAYRNGGPLRIRDVGHAVTGPEDAKTAA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   +   +   T++        L AG  P     V          +   
Sbjct: 276 WANGKRGVFLVVFKQPGANVIDTVDHIKAELPRLVAGIPPAIKVEVISDRTTTIRAAVED 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ L ++   AL+   G TL   S+  + 
Sbjct: 336 VQFTLLLTIALVVMVIFLFLRSFWATIIPSVTVPLALLGACALMWAAGYTLDNLSLMALT 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I     + +  F +   G      TI   +I+ +   + L F G
Sbjct: 396 ISVGFVVDDAIVMLENIARHIEEGEKPFTAALKGAREIGFTIVSISISLVAVLIPLLFMG 455

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FA+T+ ++I +SM  ++++   M    +R                     +
Sbjct: 456 GIIGRLFREFAVTLAMTIAVSMLVSLTLTPMMASRFMRPATEVRHGRIYQWIEGAFEAML 515

Query: 539 AIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                         +   +    ++     LF          +    +   +    D+S
Sbjct: 516 RAYERGLDLVLRWRFTTLMVFFATVGLSVYLFVAIPKGFFPQQDVGMITATSEAAQDIS 574



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 94/278 (33%), Gaps = 12/278 (4%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                S   ++ +    +T   N  +         +LA R      +R    ++   + +
Sbjct: 212 ITTVDSPKGTLDAPNRSYTIYANDQLTESKDWNDVILAYRNGGPLRIRDVGHAVTGPEDA 271

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI- 666
                      V L             ++ +K ++  +V          V    +  +  
Sbjct: 272 KTAAWANGKRGVFLVVFKQPGANVIDTVDHIKAELPRLVAGIPPAIKVEVISDRTTTIRA 331

Query: 667 ----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
                +  + + I+ + M+I++++R  ++  +    T+ L +          G   +  +
Sbjct: 332 AVEDVQFTLLLTIALVVMVIFLFLR-SFWATIIPSVTVPLALLGACALMWAAGYTLDNLS 390

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+   +G+ V+D +V+ + +    +             K   E     V  S++    
Sbjct: 391 LMALTISVGFVVDDAIVMLENI---ARHIEEGEKPFTAALKGAREIGFTIVSISISLVAV 447

Query: 783 VLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           ++P+   GG +      FA+ +A  I V+   S+ +  
Sbjct: 448 LIPLLFMGGIIGRLFREFAVTLAMTIAVSMLVSLTLTP 485



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 97/254 (38%), Gaps = 6/254 (2%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                Q+ + +    D   + +  +   +           +     + +     VA  +  
Sbjct: 766  DTLNQIHIKSPTSGDQVPLSTFAKWTTVPVRPLSISHQGQFPATTISFNLAQGVALGQAT 825

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694
            E V+  + E+    T+  +     +  ++ +    + ++ + + + + + I ++ +   L
Sbjct: 826  EAVQAAMAEMGAPPTLTGSFQGTAQAFQQSLSTVPLLIVAALVVVYLILGILYESYIHPL 885

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
              ++TL       L    LFG +F+L A+  ++ LIG    + +++ D            
Sbjct: 886  TILSTLPSAGVGALAMLMLFGFDFSLIALIGIILLIGIVKKNGIMMVD--FAITAERDEH 943

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASS 811
            ++    I K+        + T+MAA +  +P+ +    G  +       M  G++V+ + 
Sbjct: 944  LNPEQAIRKAALLRFRPIMMTTMAAMLGGVPLMLGTGTGSEIRQPLGYAMVGGLLVSQAL 1003

Query: 812  SIFIAAPILLFIYD 825
            ++F    + L++  
Sbjct: 1004 TLFTTPVVYLYLDR 1017


>gi|29347376|ref|NP_810879.1| AcrB/AcrD/AcrF family multidrug resistance protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339276|gb|AAO77073.1| multidrug resistance protein, AcrB/AcrD family [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 1065

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/694 (10%), Positives = 182/694 (26%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFSLPVEQYPDIAPPTIM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +        IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSTATNAGTVSITVYFKQGTDPDMAAVNVQNRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           S  I      QI       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSILQMFSLSSPDDSYDENFLSNYISINIKPQILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +            + P  + Q     + ++      N       FG            
Sbjct: 175 DLMIMGGEYSMRVWMK-PDVMAQYKLIPSDITGVLAEQNIESATGSFGENSNETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                 +           
Sbjct: 234 YKGRLI----------------TPEEFGDIVIRSTDNGEVLKLKDIAEVQLGQDSYAYHG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +     +    L   +R              +      S   
Sbjct: 278 GMDGHPGVSCMVFQTAGSNATEVNQNIDELLEEVRKDLPKGVELTQIMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    + +++I T A ++L G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDFRSTLIPLVGVIVSLIGTFAFMALAGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIIVVEAVQARFDVGYRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                   +   
Sbjct: 458 GGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLKPYINEDGTQKNNFAASFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           + + F++ R+    + +   +  + L+ T   +   D   G+    +
Sbjct: 518 NSAFDILIEKYKNVVLIFIKRRWLAWSLLVCSVVLLVFLMNTTKTSLVPDEDQGVVFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +            +       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLTTTDEVMERIEKRLMDIPQIKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    +  +    I
Sbjct: 638 PNDEDNVQAVIGQVYGRTADIKDASVFAISPGMI 671



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 89/201 (44%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +     +LE V+K + + V L+ I ++         E+++  I  +I+  + + +++   
Sbjct: 301 NQNIDELLEEVRKDLPKGVELTQIMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +   L  +  +I+ +  T  F AL G   NL  + A++ +IG  V+D ++V + ++  
Sbjct: 359 -DFRSTLIPLVGVIVSLIGTFAFMALAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++  GG+       F + MA  
Sbjct: 418 FDVGYRSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +   +  
Sbjct: 476 VGISAINALTLSPALCALLLK 496



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 76/253 (30%), Gaps = 12/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E   +
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGDAIKAVQETAVQ 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I  GI  ++I  I   +Y      +      + ++
Sbjct: 850  SLPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALY----ESFIIPFAVLLSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRD 759
               +  +  F  +FG+E N+     ++ LIG      +++     +         +    
Sbjct: 906  PCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERRKAGMGLIA 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +    L   + T++     + P+ +    G +   S    +  G+ +   + +FI 
Sbjct: 962  SAVSAAKARLRPILMTALTMIFGLFPLMLSSGVGANGNRSLGTGVVGGMTIGTLALLFIV 1021

Query: 817  APILLFIYDWRAK 829
              + +     + +
Sbjct: 1022 PTLFIAFQWLQER 1034


>gi|251788829|ref|YP_003003550.1| multidrug efflux system subunit MdtC [Dickeya zeae Ech1591]
 gi|247537450|gb|ACT06071.1| acriflavin resistance protein [Dickeya zeae Ech1591]
          Length = 1029

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/646 (10%), Positives = 155/646 (23%), Gaps = 38/646 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GLL           +   P                     L    
Sbjct: 10  RPVATTLLALAIALCGLL-----GYQLLPVSPLPQVDYPVI---------SVSATLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               +I L FA  R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGINEMTSMSSLGSTRIILQFALDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q   ++   +    
Sbjct: 116 QSLLPSSMPSRPYYRKVNPSDAPIMI-ITLTSDTYGPGQLYDYASTQIAQRVSQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  +                   
Sbjct: 175 VTIGGSSLPAVRVALNPQALFNQGVSLDAVRQSIAQSNVRQPLGSVDSGSTHYQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++                           +                 +   +  VL+  +
Sbjct: 235 LKTA--------------------DAYRSLIIHYNNGAPVRLSDVATVKDSVQNVLNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +       +   T++        L+A         V +        S    
Sbjct: 275 TNAKPAVLVLIRRAPDANIISTVDAIRAAMPELQAMLPASITLNVAQDRSPTIRASLHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +  I   LV++V+F+ +   +  L+   ++ +++I T + + L G +L   S+  + +
Sbjct: 335 ERSLTIAVSLVILVVFLFLRSARATLIPAIAVPVSLIGTFSAMYLCGFSLNNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E I            +   G      T+   +++ +   + L F  G
Sbjct: 395 ATGFVVDDAIVVLENISRHIEAGMKPLQASLQGVREVGFTVVSMSLSLIAVFIPLLFMDG 454

Query: 483 GA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R F+IT+ ++ILIS+  +I++   M   ++R    +S          L+     
Sbjct: 455 LPGRLFREFSITLSVAILISLLVSITLTPMMCARLLRPHTPRSQPRTRGFNRLLLGLQQG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                         ++  +     L               Q        +      S   
Sbjct: 515 YGRSLRWVLNHSRWVMMVLLGTIGLSVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQA 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             +           +        +  G       +   +K      
Sbjct: 575 MKRKLQDFMTIVRADPAVDNVTGFTGGMRTNSGSMFISLKPLAQRD 620



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 69/196 (35%), Gaps = 9/196 (4%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                A    +  ++  +   + L+  Q+          ++ R   + V +  + + +++
Sbjct: 294 ISTVDAIRAAMPELQAMLPASITLNVAQDRSPTIRASLHDVERSLTIAVSLVILVVFLFL 353

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L     + + +  T     L G   N  ++ A+    G+ V+D +VV + +
Sbjct: 354 ---RSARATLIPAIAVPVSLIGTFSAMYLCGFSLNNLSLMALTVATGFVVDDAIVVLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
               +     +       + + E     V  S++     +P+       G +   F+I +
Sbjct: 411 ---SRHIEAGMKPLQASLQGVREVGFTVVSMSLSLIAVFIPLLFMDGLPGRLFREFSITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           +  I+++   SI +  
Sbjct: 468 SVAILISLLVSITLTP 483



 Score = 38.9 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 104/306 (33%), Gaps = 20/306 (6%)

Query: 544  RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             AR      S+   + +          Y    +  + + V +    D S +         
Sbjct: 713  MARLGINVSSVNALLNNAFGQRQISTIYQPMNQYKVVMEVDSAYTQDPSSLDKMFVINND 772

Query: 604  GDISFQNFDGEKNF--------------LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            G     +F                       L +   + V+ +     +++ +T +    
Sbjct: 773  GKPIPLSFFAHWQPANAPLAVNHQGLSAAATLSFNLPEGVSLSDATNAIERTMTAVGVPP 832

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
            T++          ++     +V +I + + + I + I ++     L  ++TL       L
Sbjct: 833  TVRGQFAGTALAFQQSQHSQVVLIIAAILTVYIVLGILYENVAHPLTILSTLPSAGVGAL 892

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                LF   F+L A+  +L LIG    + +++ D     +      +S ++ I ++    
Sbjct: 893  LALELFNKPFSLIALIGILLLIGIVKKNAIMMVD--FALVAQREGKLSAQEAIFRACMLR 950

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + T+MAA    LP+ +    G  +     I +  G+V++   +++    + LF   
Sbjct: 951  FRPIMMTTMAALFGALPLVLSNGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDR 1010

Query: 826  WRAKNA 831
               +  
Sbjct: 1011 LHWRRR 1016


>gi|283852859|ref|ZP_06370121.1| acriflavin resistance protein [Desulfovibrio sp. FW1012B]
 gi|283571769|gb|EFC19767.1| acriflavin resistance protein [Desulfovibrio sp. FW1012B]
          Length = 1042

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/515 (13%), Positives = 142/515 (27%), Gaps = 38/515 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++ + I   G++        +  +   P+                  + L   
Sbjct: 9   QRPVMTTLVMAAILIFGIMA-----YVKLPVSDLPNVDFPTI---------EVRVSLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +               ++TL FA  R  +  A  V   L  
Sbjct: 55  SPETMAASVANPLEKQFSTIAGLDSMTSVNTIGSTRVTLQFALDRNIDAAALDVQSALTT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D              S +L    I   +    +           +I +     
Sbjct: 115 AGKDLPDDLPSPPYFRKVNPADSPILY-LAISSDVMRLSDVDEYAENMMAQRISMVAGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  + DP  +        + S      N +             +  +  
Sbjct: 174 QVTVYGSKKYAVRIQLDPEAMAAKGIGVDEASTAVKNGNVNLPVGTVSGPSKEYTVRSSG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +                 +   +       
Sbjct: 234 KLLSA--------------------DGYRPLIVAWRNGSPVRLSEIAKVTDSVEETRRFN 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +           +   +    ++    L    +A         V      +   S + 
Sbjct: 274 WFSGTPGLVLAIQRQPGTNTVAVVDAVKSLLPTFQAQLPASVSLQVLYDRSVSIRESVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV++V+F+ +      ++   ++ ++V+ T A + +LG +L   S+  + 
Sbjct: 334 VKFTLVLTVCLVVMVIFLFLRNIPATVIPSLALPMSVVGTFAAMYVLGFSLDNISLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E I       +S   +   G      TI    I+     + +FF G
Sbjct: 394 LSVGFVVDDAIVMLENIVRHLEMGKSTLQAAMDGSREISFTIVSMTISLAAVFLPVFFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
              G     FA+T+ +SILIS   +IS+   +   
Sbjct: 454 GVVGRLFHEFAVTIMVSILISGVVSISLTPMLCNL 488



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 68/204 (33%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           V  ++     ++    ++Q        I   +       V+   +
Sbjct: 285 IQRQPGTNTVAVVDAVKSLLPTFQAQLPASVSLQVLYDRSVSIRESVADVKFTLVLTVCL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++           +     L + +  T     + G   +  ++ A+   +G+ V+D +
Sbjct: 345 VVMVIFLFLRNIPATVIPSLALPMSVVGTFAAMYVLGFSLDNISLMALTLSVGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +   ++      S          E     V  +++     LP+   GG V     
Sbjct: 405 VMLENI---VRHLEMGKSTLQAAMDGSREISFTIVSMTISLAAVFLPVFFMGGVVGRLFH 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ +   I+++   SI +   +
Sbjct: 462 EFAVTIMVSILISGVVSISLTPML 485



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 86/244 (35%), Gaps = 9/244 (3%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + V L  +     ++    I+             L+           + ++ + ++   V
Sbjct: 779  QLVPLDTLVKRAVAVGPLSINHSGQSPSVTLSFNLRPGASLGNVVAAIEKLARNELPASV 838

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
              S     +     ++   +   +  ++I  +  ++Y      +   L  ++ L      
Sbjct: 839  FTSFQGEAQAFQSSLTGLSLLLAMAVLVIYIVLGILY----ESFIHPLTILSGLPSAGVG 894

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L    LFG++ N+     ++ LIG    + +++ D   +        I  R  I +   
Sbjct: 895  ALATLMLFGMDLNIYGFVGIIMLIGIVKKNAIMMIDFALE--AQRGQGIPARQAIYEGAL 952

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + T+MAA +  LP+A+  G+         + +  G+VV+   ++F      +++
Sbjct: 953  TRFRPIMMTTMAALMGTLPIALGLGAGAAARRPLGLCVVGGLVVSQLLTLFFTPVYYIYL 1012

Query: 824  YDWR 827
               +
Sbjct: 1013 DGLQ 1016


>gi|218131284|ref|ZP_03460088.1| hypothetical protein BACEGG_02895 [Bacteroides eggerthii DSM 20697]
 gi|217986501|gb|EEC52837.1| hypothetical protein BACEGG_02895 [Bacteroides eggerthii DSM 20697]
          Length = 1048

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/587 (11%), Positives = 165/587 (28%), Gaps = 46/587 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENVLNSVSDLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSELPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP +L     +   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPYKLEAYNLSIETISSIIGAENRNIPGGNFDIGNETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E++ + +                            +      I   +       
Sbjct: 232 EFDDSGELANVVVGTY--------------------NGATVYLRDVAKIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISKKVQDALPRLQKNLPSDVKLGVIVDTSENILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAISGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQASVHGTNEVAISVVASTLTMIAVFFPLTMVT 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFF 532
           G +    +     M   + +S  +A+++   +   +                    +   
Sbjct: 452 GMSGVLFKQLGWMMCAIMFVSTVSALTLTPMLCSQLLRLQRKQSKVFRIFFGPIEHALDG 511

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           L      +     R   V +        + LL    +          
Sbjct: 512 LDNWYARMLNWAVRHRMVVLVGCVVFFILSLLCAKTIGTEFFPAQDN 558



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 94/249 (37%), Gaps = 7/249 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V   +++++       N   +   +V  +    +SV  ++ ++    ++ + +P 
Sbjct: 252 VYLRDVAKIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISKKVQDALPRLQKNLPS 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                  +   +     I      V+ + + ++I +++   +W   L    T+ L +  +
Sbjct: 312 DVKLGVIVDTSENILNTIDSLTETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIAS 371

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             + A+ G   N+ +++++   IG  V+D +VV + +             +       NE
Sbjct: 372 FIYLAISGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQASVHGTNE 428

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V +++       P+ +     G +       M   + V+  S++ +   +   + 
Sbjct: 429 VAISVVASTLTMIAVFFPLTMVTGMSGVLFKQLGWMMCAIMFVSTVSALTLTPMLCSQLL 488

Query: 825 DWRAKNARI 833
             + K +++
Sbjct: 489 RLQRKQSKV 497



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 77/242 (31%), Gaps = 8/242 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              +L  +            ++  +V +      +     V            P       
Sbjct: 792  IKDLGKVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNAIIDKLEKPSDITIQV 851

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                          G +GV+I  + + I +  +F+   +    I ++   ++  L    +
Sbjct: 852  SGSFEDQQDSFRDLGTLGVLI-IVLVFIVMAAQFESLTYPFILILSVPFAMSGVLMALFI 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++ ++   + LIG  V + +V+ D     +       S  + +  +    L   +
Sbjct: 911  TNTTLSVMSLLGSIMLIGIVVKNGIVLID---YTILCRERGQSVLNAVVTAGKSRLRPVL 967

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+M   + ++PMAV    G  +    AI +  G+ V+   ++     +         K 
Sbjct: 968  MTTMTTILGMIPMAVSTGQGSEMWSPMAIAVIGGLAVSTILTLIYVPTMYCIFGGVGIKR 1027

Query: 831  AR 832
             R
Sbjct: 1028 QR 1029


>gi|90422702|ref|YP_531072.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
 gi|90104716|gb|ABD86753.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
          Length = 1057

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 76/658 (11%), Positives = 183/658 (27%), Gaps = 41/658 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GI 86
           +  + + P  +P               + +  +        L+      + + +     +
Sbjct: 30  RIPVSQLPDIVPP-------------QVRVSTNFPGASAEVLESTVAQPIEAKVVGVDKM 76

Query: 87  GVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
                    +    + +SFA     +     V   +Q   S+L  + +   +        
Sbjct: 77  LYMKSSSGNDGSYTLDVSFALGSNPDINTVNVNNRVQNALSQLPAEVRLQGVAVQKRSSS 136

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            + +   +        +  +   +   +D++       +     R+   +    D  RL 
Sbjct: 137 MLQVVDMSSKGGKYDPVFLTNYGLINVVDELARVPGVGEATLFGRLNYSMRIWFDIERLS 196

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            L    + +       N        G + + D    Q  ++ +  ++             
Sbjct: 197 SLGMVPSDVVAAISAQNVQAPVGRIGAQPVPDDQKFQINLQTQGRLT------------- 243

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
           K  +    +                 +            L                +   
Sbjct: 244 KPEEFGAIVLRANADGSVLRVSDVARVELGALSEDTHARLNGDPTVGIGIFQAPGANAIN 303

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T          LR          V   +      +      T      LV +V+F+ +  
Sbjct: 304 TATAVRAKLDELRQRFPDGVQARVVFDSTVFVNDTIKAVMHTLLEAFALVALVVFLFLGN 363

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  L+   ++ +++I T A+L  LGA++   S+  +VL IG+ VD  I+V E +     
Sbjct: 364 LRATLIPIIAVPVSLIGTFAVLLALGASVNTVSLLALVLAIGIVVDDAIVVVENVERVME 423

Query: 444 KNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILI 498
           +    S   +     ++  + I    +  L   V + F     G   R FAIT+  ++LI
Sbjct: 424 EEPELSPADATKKAMNQVTAPIIAITLVLLSVFVPIGFLPGIMGELFRQFAITISAAMLI 483

Query: 499 SMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
           S   A+++  A+          R   M  I              + I   R     + + 
Sbjct: 484 SAINALTLSPALCAVFLRHGGPRRGVMHWIGRRIDGARDRYAGAVRIALHRPALSILIVI 543

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                 +     T       + +G   + V       ++     + +++    +      
Sbjct: 544 GCGLGIAALNGTTPSGFLPEEDQGAFFINVQLPDGASVARTEETVIAVENIVKTMPQVRD 603

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
             + +         +     ++  +K         S+ Q          +++    ++
Sbjct: 604 VLSIVGLSLLDNYSASNNAFMIVQLKPFEDRRAASSSAQTLIAKTFGAVQQVRTATVL 661



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 84/233 (36%), Gaps = 5/233 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +S V          D   +        +   Q    +++     +     ++ +  P   
Sbjct: 264 VSDVARVELGALSEDTHARLNGDPTVGIGIFQAPGANAINTATAVRAKLDELRQRFPDGV 323

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
                        + I+  +  ++ +   + + +++        L  I  + + +  T  
Sbjct: 324 QARVVFDSTVFVNDTIKAVMHTLLEAFALVALVVFLFLGNLRATLIPIIAVPVSLIGTFA 383

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                G   N  ++ A++  IG  V+D +VV + + + +      +S  D   K++N+  
Sbjct: 384 VLLALGASVNTVSLLALVLAIGIVVDDAIVVVENV-ERVMEEEPELSPADATKKAMNQVT 442

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              +  ++      +P+       G +   FAI ++  ++++A +++ ++  +
Sbjct: 443 APIIAITLVLLSVFVPIGFLPGIMGELFRQFAITISAAMLISAINALTLSPAL 495



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/448 (9%), Positives = 137/448 (30%), Gaps = 20/448 (4%)

Query: 397  NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
             VI    ++  +     + SI G+ L    +  +N  +  +++    +  +   +     
Sbjct: 587  TVIAVENIVKTMPQVRDVLSIVGLSLLDNYSASNNAFMIVQLKPFEDRRAASSSA-QTLI 645

Query: 457  SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            ++ +  +       ++   +    G     GF   +            S+   ++    +
Sbjct: 646  AKTFGAVQQVRTATVLPFNLPPVIGLSTAGGFQYQLESLEGAEPAALGSVTNGLLAAGNQ 705

Query: 517  YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY----- 571
            + ++  +     +        I  +  ++    +         ++  L+ +  N      
Sbjct: 706  HPQLTRVFSTYGANAPSYYLDIDREKAQSLGVTINDIFSALQITLGGLYINNFNMFGRTW 765

Query: 572  --------GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                               +         V   ++ S++                V +  
Sbjct: 766  QVNLQGDAEGRRDLPALWDIYVRNAKGTMVPLQSIASVRSVTGPAVITRYNNYRSVTING 825

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
             P   V+    +  + +   + +P            +    + + G +  +    A L  
Sbjct: 826  SPAAGVSSGAAMAAMAEVSQKTLPPGYAFEWTGTAYQEHEAVGKTGYILGLALLFAYLFL 885

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
            + +   W   +  + ++ + +        + G+  +L A   ++ LI  S  + +++ + 
Sbjct: 886  VALYESWVIPIPVLLSVSIAVLGAFVGVLIAGVTLDLYAQIGLVVLIALSAKNGILIVEF 945

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIP 800
             ++  +     +S  +             + TS+A  + ++P+    G+ +    + + P
Sbjct: 946  AKEQREA---GLSITEAAVLGARLRFRAVMMTSIAFILGLVPLVWADGAAMLARRNLSTP 1002

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  G++ A+   I +   + +     R 
Sbjct: 1003 VFAGMLTASLLGILLIPMLYVVFQSMRE 1030


>gi|187926364|ref|YP_001892709.1| acriflavin resistance protein [Ralstonia pickettii 12J]
 gi|241665851|ref|YP_002984210.1| acriflavin resistance protein [Ralstonia pickettii 12D]
 gi|187728118|gb|ACD29282.1| acriflavin resistance protein [Ralstonia pickettii 12J]
 gi|240867878|gb|ACS65538.1| acriflavin resistance protein [Ralstonia pickettii 12D]
          Length = 1044

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 147/550 (26%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATTLLMVAILLSGLVAYRMLPLSALPEVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F  S   +    +V   +   
Sbjct: 56  PDVMTSSITAPLERQFGQMPGLKQMTSSSSGGASVITLQFDLSLSLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +      + +L    I        +    +  +   ++        
Sbjct: 116 GNLLPNDLPMPPIYSKVNPADAPIL-ALAITSNTMPLPKLEDLVDTRIAQKLSQLPGIGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + + S L  L  +   +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRIQANTSALAALGLSIDDIRTAIGTANVNGAKGSFDGPMRASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 I            
Sbjct: 235 LKSAAE--------------------YSKMIVAYKNGAPIRLTDVAQIVDGAENSKLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +  A  L   L+          +          S S  
Sbjct: 275 SNTTPAIILNVQRQPGANVIEVVNRAKALLPQLKETLPGNVEVSLLTDRTTTIRASVSDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFELMLAVALVVMVIFLFLRNVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +      +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYIEEGDPPMEAALKGSKQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ +SILIS   ++++   M   ++++           +      + IA
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLKHIPEAEQSRFYHAAGAFFDNVIA 514

Query: 540 IQFMRARFWG 549
                 ++  
Sbjct: 515 RYGRMLQWVL 524



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
           T   N  +         ++A +      +    + +   + S           + L  Q 
Sbjct: 228 TIDANDQLKSAAEYSKMIVAYKNGAPIRLTDVAQIVDGAENSKLAAWSNTTPAIILNVQR 287

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIAM 680
                   V+   K  + ++           +    +  +          + + ++ + M
Sbjct: 288 QPGANVIEVVNRAKALLPQLKETLPGNVEVSLLTDRTTTIRASVSDVQFELMLAVALVVM 347

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           +I++++R      +     + L +  T G   L G   N   + A+    G+ V+D +V+
Sbjct: 348 VIFLFLR-NVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVM 406

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF 797
            + +    +         +   K   +     +  + +    ++P+   G   G +   F
Sbjct: 407 IENI---ARYIEEGDPPMEAALKGSKQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFREF 463

Query: 798 AIPMAFGIVVAASSSIFIAA 817
           AI +A  I+++A  S+ +  
Sbjct: 464 AITLAVSILISAVVSLTLTP 483



 Score = 41.6 bits (95), Expect = 0.53,   Method: Composition-based stats.
 Identities = 33/257 (12%), Positives = 86/257 (33%), Gaps = 8/257 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +         +         +      ++     S       +     + +      +  
Sbjct: 761  MQLGPQSLYDLHVASSSGQQIPLGAFATVVEQPGSLVVNHQGQFPAATISFNLAPRASLG 820

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              ++ +     EI   +++Q +        R  +   +  ++ + I M I + + ++   
Sbjct: 821  AAVDTINAVEEEIGLPASMQTSFQGAALAFRASLSNQLWLILAAIITMYIVLGVLYESTI 880

Query: 693  ALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                I + +          +L   G +  + A+  ++ LIG    + +++ D   +    
Sbjct: 881  HPVTILSTLPSAG-VGALLSLLVSGKDMGIIAIIGIILLIGIVKKNAIMMIDFALE--AE 937

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                ++ RD I ++        + T+MAA +  LP+ +    G  +     I M  G++V
Sbjct: 938  REQGMAPRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGLLV 997

Query: 808  AASSSIFIAAPILLFIY 824
            +   ++F    I L   
Sbjct: 998  SQVLTLFTTPVIYLAFD 1014


>gi|293394945|ref|ZP_06639234.1| multidrug resistance protein MdtC [Serratia odorifera DSM 4582]
 gi|291422535|gb|EFE95775.1| multidrug resistance protein MdtC [Serratia odorifera DSM 4582]
          Length = 1026

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/667 (10%), Positives = 182/667 (27%), Gaps = 44/667 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P       +             L    
Sbjct: 10  RPVATTLLTLAIAIAGVM-----GFRLLPVSPLPQVDFPVIV---------ISASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               ++ L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERALGRIAGVNEMTSMSSLGSTRVILQFDLDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +     +  +       Q   +I  +E    
Sbjct: 116 QSLLPTGMPNRPSYRKVNPSDAPIMI-LTLTSDTYNQGQLYDFASTQLAQKIAQTEGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P  L     +   +       N  +       +  R        
Sbjct: 175 VSVGGSSLPAVRVELNPGALFNQGISLDGVRQAISNANVRRPQGAVENQQQRWQLQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                       +                 +   +  V +  +
Sbjct: 235 LKTAAD--------------------YQPLIVHYNNGSAVRLGDVAEVKDAVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A        S     +   T++        L+          + +        S +  
Sbjct: 275 TNAEPAIILTVSRAPDANIIETVDRIRAELPTLQETIPASIHLNIAQDRSPTIRASLAEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + + AI  GLV++V+F+ +  G+  L+   ++ +++I + A + L G +L   S+  + +
Sbjct: 335 EQSLAIAIGLVILVVFIFLRSGRATLIPAVAVPVSLIGSFAAMYLCGFSLNNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
             G  VD  I+V E I            +   G      T+   +++ +   + L     
Sbjct: 395 ATGFVVDDAIVVLENISRHVEAGIKPLNAALRGVREVGFTVLSMSVSLVAVFIPLLLMSG 454

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSRFFL 533
             G   R FA+T+ +SI +S+  ++++   M  +++R+      ++ +      +     
Sbjct: 455 LPGRLFREFAVTLSVSIGLSLIVSLTLTPMMCAYLLRHQPARAQRRSRGFGRLLVGLQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +      +R+         ++     +      +     G +   + A++ +    
Sbjct: 515 YGRSLNWVLGHSRWVLAVFLATIALNVWLYVSIPKTFFPEQDTGRLMGFIQADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R  LE          + D    F    +   G      + L   +    +++     + 
Sbjct: 575 MRGKLEDFMKIVREDPDVDNVTGFTGGSRTNAGSMFISLKPLSERRANAQQVIARLRAKL 634

Query: 654 TEIVGPK 660
            +  G  
Sbjct: 635 AQEPGAS 641



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 65/164 (39%), Gaps = 7/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + ++++I++R      L     + + +  +     L G   N  ++ A+    
Sbjct: 338 LAIAIGLVILVVFIFLR-SGRATLIPAVAVPVSLIGSFAAMYLCGFSLNNLSLMALTVAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +     I   +   + + E     +  S++     +P+ +  
Sbjct: 397 GFVVDDAIVVLENI---SRHVEAGIKPLNAALRGVREVGFTVLSMSVSLVAVFIPLLLMS 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           G        FA+ ++  I ++   S+ +   +  ++   +   A
Sbjct: 454 GLPGRLFREFAVTLSVSIGLSLIVSLTLTPMMCAYLLRHQPARA 497



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     +++ +T +   ST++       ++ +E ++  ++ +I +   
Sbjct: 803  TISFNLPDGGSLSDATAAIERTMTALGVPSTVRGAFAGTAQVFQETLQSQLLLIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYIHPLTILSTLPSAGVGALLALELFDASFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     I+ R+ I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALDAQRNG--GINAREAIFQASLLRFRPIMMTTLAALFGALPLVLTSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +A G++++   +++    I L+    + +  R
Sbjct: 981  PLGITIAGGLLMSQLLTLYTTPVIYLYFDRLQMRFRR 1017


>gi|148242535|ref|YP_001227692.1| RND family multidrug efflux protein [Synechococcus sp. RCC307]
 gi|147850845|emb|CAK28339.1| Multidrug efflux transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1)
           family (2.A.6.2.) , RND superfamily [Synechococcus sp.
           RCC307]
          Length = 1132

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/553 (13%), Positives = 157/553 (28%), Gaps = 41/553 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I   GL+       P   ++  P   P               + +  + 
Sbjct: 10  RPVLTSVCSLLIVIAGLIAI-----PILPVEMLPDIAPPT-------------VRVSANY 51

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++   +  L   +        I   S       IT+ F      +     V  
Sbjct: 52  VGADAVSVEQGVTSVLEQQINGVENMDYISSSSSSDGSAMITVMFNSGTDGDINQVNVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV---ISHAIEQSMEIIRQRIDQI 174
            +     +L  + K++ +V       ++++     +            S  + +   D I
Sbjct: 112 RVSLAEPRLPSEVKQSGVVVDKASTSTLLVYNFTNEDPNKIDYSVETISGYLDQNLTDSI 171

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                           + +    DP++L  +  T++ +       N        G     
Sbjct: 172 KRVTGVGSVTYYGNRELAIRIWLDPNKLAAMELTSSDVVNAIRSQNRLVPSGKVGGAPAP 231

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           D     + ++ +  ++                   + I   + G                
Sbjct: 232 DDQQYTFTIQLQGRLTSEDEFRD------------LVIKTTKDGGLIRLRDVGQVELGGN 279

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           +  +    L          S     +     +    +    +              +   
Sbjct: 280 SYEISAVNLEGNPAVSMAISQLGGSNALVVSDGVKQVIEEFKEKMPVGMKIEQVFDSTEF 339

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S     G+      LV+++LF+ +   K  LV   +I + ++ T A +   G +L  
Sbjct: 340 ITASIEGVVGSLRDAVVLVVLILFLFLQNWKATLVPGIAIPVALVGTFAFVLGFGFSLNQ 399

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIA 473
            ++ G+VL  GL VD  I V E    +     +   +        +S  I  S +   + 
Sbjct: 400 LTLFGLVLATGLVVDDAITVIEDTSSKKETGLTAVEAAKSTMDELFSAVIATSLVKMCVF 459

Query: 474 TVVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
             VLFF G  G   + FA T+  SI IS F A++    +   ++  +  +          
Sbjct: 460 LPVLFFPGATGTIYKQFAATIIFSIAISTFNALTFSPMLSALLLSSEYKEPNRRTYTIAA 519

Query: 532 FLIPDCIAIQFMR 544
            +I     + F+ 
Sbjct: 520 TVIGFVYGLLFVG 532



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T  F   FG   N   +  ++   G  V+D + V   +     
Sbjct: 369 WKATLVPGIAIPVALVGTFAFVLGFGFSLNQLTLFGLVLATGLVVDDAITV---IEDTSS 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
              T ++  +    +++E     + TS+      LP+  + G+       FA  + F I 
Sbjct: 426 KKETGLTAVEAAKSTMDELFSAVIATSLVKMCVFLPVLFFPGATGTIYKQFAATIIFSIA 485

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
           ++  +++  +  +   +     K
Sbjct: 486 ISTFNALTFSPMLSALLLSSEYK 508



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 75/242 (30%), Gaps = 9/242 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S  +  L        +       +  L R     G         + +          +
Sbjct: 882  NSSGEQIPLAEFFTVKQTIGPSIINRFNLFRSIKIEGSPAPGKSSGQAITGIQDVFAAQN 941

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                          E+    +  VI     +++Y+ +      +   L  + T+   +  
Sbjct: 942  FQGLGFDWTGISREEVKAGALAVVIFGMGILVVYLVLSAQYESYTDPLIILMTVPTAMLG 1001

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L F +  G   N+ A   ++ LIG +  + +++ D      +      S  +    +  
Sbjct: 1002 ALVFLSGAGQVLNIYAQVGLVMLIGLAAGNGILIVD---LANQRMGEGRSALEAATDAAK 1058

Query: 767  ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + T++++    LP+ +    G     S  + +  G+ VA   S  +     + +
Sbjct: 1059 SRLRPILMTAISSLFGFLPLMLASGAGAQSQASLGLVVFGGLSVATVLSTLVVPVFYVVM 1118

Query: 824  YD 825
             +
Sbjct: 1119 KN 1120


>gi|167644772|ref|YP_001682435.1| acriflavin resistance protein [Caulobacter sp. K31]
 gi|167347202|gb|ABZ69937.1| acriflavin resistance protein [Caulobacter sp. K31]
          Length = 1042

 Score =  162 bits (410), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/687 (10%), Positives = 199/687 (28%), Gaps = 57/687 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   + +L+  +   G+            + +FP+                  +     
Sbjct: 18  KNPIPVAVLFIALIIAGI-----GCYMGLPIKQFPNVEFPAVT---------VTVTQSGA 63

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        S+ Q  +  T+ F      + + D+V   +  
Sbjct: 64  APGEMETQVTRPIEDAVASISNVKTIRSSVVQGTSTTTIEFNLGEDLQKVTDEVRSKIDQ 123

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  + ++         I+            + E S  I       +   +   
Sbjct: 124 TRSLLPKEVDEPIVQRLEITSAPIITYAVAAPN--MSSTELSWFIDDTVTRALQGEKGVA 181

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP R+     T  +++      +    G    +           
Sbjct: 182 QVARVGGVDREINVVIDPDRMASFGVTAPQLNQALASFSVDAPGGRAKI----------- 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G             T + + +I+    G R         +G+         
Sbjct: 231 ---------GGREQTLRVLGAATTVEQLRNITIPITGGRYVRLTDVAQVGQGSEEERGFA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           S     +        L A    +         V     S + 
Sbjct: 282 RLDNRPVVAFQVMKTRDSSDVAVEDRVKAAVDRLEAKQPGVSFVK-IFSTVDETRASFAA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      L  +V+F+ +   +  L+   ++ +++I T A ++++G +L + ++  + 
Sbjct: 341 TEHTLLEGMLLASLVVFLFLREWRATLITAIAMPVSLIPTFAFMAIMGFSLNVVTLLALT 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  ++  E I +   + Q  F +   G       +  +  T +   V + +  
Sbjct: 401 LVIGILVDDAVVEIENIEKRVARGQRPFQAAMEGADSIGLAVVATTFTIVAVFVPVSYMP 460

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +++L S+  A  +   +  + ++  K           +  + D  
Sbjct: 461 GTPGQFFKEFGLTVAMAVLFSLVVARLLTPLLAAYFLKPAKDPHPRPEFKGFYRGVLDWS 520

Query: 539 AIQFM-----------------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                                 +        +   +   + +    G       +    +
Sbjct: 521 LDHRFLSIIMGTVILVGSFALVKFIPTAFQPAGNANYYYLKVQGPPGATTADMERTVQAV 580

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +  +  + + V + + S        Q+    ++  + +       +  T++ ++V+  
Sbjct: 581 TTMFRKRPETAHVFAQVGSNIGSGWGGQSGADIRDATITVVLNGKRDLTVTQIKQVVRNG 640

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRK 668
           + +I         +    ++   LI  
Sbjct: 641 LHDIPDARVNLLGDWGTSEVQTILISD 667



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 81/252 (32%), Gaps = 13/252 (5%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              R  D++ V    E  +               +            + +      +   
Sbjct: 260 RYVRLTDVAQVGQGSEEERGFARLDNRPVVAFQVMKTRDSSDVAVEDRVKAAVDRLEAKQ 319

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
             V    I +T               + G++++++ + +++    +W   L     + + 
Sbjct: 320 PGVSFVKIFSTVDETRASFAATEHTLLEGMLLASLVVFLFL---REWRATLITAIAMPVS 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T  F A+ G   N+  + A+  +IG  V+D VV  + +    K             +
Sbjct: 377 LIPTFAFMAIMGFSLNVVTLLALTLVIGILVDDAVVEIENI---EKRVARGQRPFQAAME 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
             +      V T+       +P++   G+       F + +A  ++     S+ +A  + 
Sbjct: 434 GADSIGLAVVATTFTIVAVFVPVSYMPGTPGQFFKEFGLTVAMAVLF----SLVVARLLT 489

Query: 821 LFIYDWRAKNAR 832
             +  +  K A+
Sbjct: 490 PLLAAYFLKPAK 501



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 79/218 (36%), Gaps = 5/218 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +  L       +     +   V ++    +     + +  V K  T     +++    
Sbjct: 781 DTVADLSFQAGPAKIDRFARKRQVTIEADLANGAQLGQAMADVGKLPTMKSLPASVGPAT 840

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALF 714
               +   EL     V ++ +   +   + + F+ +F  +  ++ L L I        + 
Sbjct: 841 AGDQEAFVELFTGFAVALLSAVGLVFGVLVLLFRSFFKPITILSALPLAIGGAFLALLVT 900

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   ++ ++   L L+G +  + +++ +   +  +     +S RD I  + +E     V 
Sbjct: 901 GQSLSMPSLIGFLMLMGLAAKNSILLVEYAIEQERA---GMSQRDAILDACHERARPIVM 957

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
           T++A    +LP    G      F  PMA  ++    +S
Sbjct: 958 TTLAMMAGMLP-TALGIGTGSEFRQPMAVAVIGGLITS 994


>gi|312129619|ref|YP_003996959.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Leadbetterella byssophila DSM 17132]
 gi|311906165|gb|ADQ16606.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Leadbetterella byssophila DSM 17132]
          Length = 1046

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/631 (11%), Positives = 167/631 (26%), Gaps = 54/631 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G+L      L    + ++P   P               ++   + 
Sbjct: 8   RPVFSSVISVLIVILGIL-----GLAVLPVSQYPEIAPPT-----------VQVI--ANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + +     +   +        I   +       I + F      +     V  
Sbjct: 50  PGANAQTVLESVIVPIEEQINGVEGMDYISSTASNNGSATIQVIFKQGVDPDIATVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  ++ + T  ++  +++            A      +    I  +   
Sbjct: 110 RVARATPLLPAEVTRSGVTTQKQQTSALMFLSYYAKSKEYDATYIQNYLNINVIPVLKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                       +  +    DP ++       A++S      +        G     D  
Sbjct: 170 NGVGDATVFGAKVYSMRVWLDPVKMATYGLVPAQISAAINEQSLEAAAGQLGE---NDGA 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY+++                      +    +     G +  +      I       
Sbjct: 227 SFQYVLK-------------YGGKYRTEEQYENIVVKALPGGQVLYLKDVAKIELGSQSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +         I    +++        I+          
Sbjct: 274 SGSGELNGQPAVTIAVYQTPGSNAQEINNNLKIELEKIKSQLPDGVDYIINFDTNEFLDA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV  V+F+ +   +  +V   ++ +++I T   L+L G +L L ++
Sbjct: 334 SISKVVHTLVEAFLLVFAVVFIFLQDIRSTIVPLIAVPVSIIGTFFFLTLFGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E I  +          +     S   + I    +      + 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAIHAKMESTGLDPKSASISAMSEISTAIVSITLVMAAVFIP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKS 522
           + F  G      + F IT+ +SI IS   A+++  A+               I  +   +
Sbjct: 454 VTFITGPTGVFYKQFGITLIVSIFISAVNALTLSPALCALFLKNHEGAHSKGIGQRFFDA 513

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +    +         +  F       V ++I                   + +G +   
Sbjct: 514 FNTGFETMTKKYAKSFSFLFKHKWVTAVILAICLGGVFYANKTMPSGFVPNEDRGFLFGN 573

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           V          V + L   +   +  +    
Sbjct: 574 VELPAGASTDRVYTLLSDFEKKAMHIKGIKN 604



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/177 (15%), Positives = 61/177 (34%), Gaps = 9/177 (5%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
             E+       +I +   + +Y  +      +   L  I +L   I          G+E N
Sbjct: 863  EEIKAGSQTALIFALCVIFVYFILSAQYESYILPLSVILSLPAGIMGAYISQKFAGLENN 922

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            +    A++ L+G    + +++ +     ++      +            L   + TS A 
Sbjct: 923  IYFQIALVMLVGLLAKNAILIVEFA---LQRRQHGETIAQAAINGAISRLRPILMTSFAF 979

Query: 780  FISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             + ++P+    G   I   S     AFG+++     +FI   + +     + K   +
Sbjct: 980  ILGLMPLVFAKGVGYIGNRSVGTGAAFGLLIGTIIGVFIIPVLFVIFQSLQEKVKPV 1036



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 95/255 (37%), Gaps = 7/255 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +   + + L  V       Q    S +        +   Q    ++      L++  +KI
Sbjct: 252 LPGGQVLYLKDVAKIELGSQSYSGSGELNGQPAVTIAVYQTPGSNAQEINNNLKIELEKI 311

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
              +P            +     I K +  ++ + + +   ++I        +  +  + 
Sbjct: 312 KSQLPDGVDYIINFDTNEFLDASISKVVHTLVEAFLLVFAVVFIFLQDIRSTIVPLIAVP 371

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + I  T  F  LFG   NL  + A++  IG  V+D +VV + +    K+ +T +  +   
Sbjct: 372 VSIIGTFFFLTLFGFSLNLLTLFALVLAIGIVVDDAIVVVEAIH--AKMESTGLDPKSAS 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
             +++E     V  ++      +P+    G        F I +   I ++A +++ ++  
Sbjct: 430 ISAMSEISTAIVSITLVMAAVFIPVTFITGPTGVFYKQFGITLIVSIFISAVNALTLSPA 489

Query: 819 I-LLFIYDWRAKNAR 832
           +  LF+ +    +++
Sbjct: 490 LCALFLKNHEGAHSK 504


>gi|226228046|ref|YP_002762152.1| multidrug resistance protein [Gemmatimonas aurantiaca T-27]
 gi|226091237|dbj|BAH39682.1| multidrug resistance protein [Gemmatimonas aurantiaca T-27]
          Length = 1049

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/529 (12%), Positives = 146/529 (27%), Gaps = 36/529 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKKE- 84
           L Q  + ++P+  P               + +  D     N  L +     L   +    
Sbjct: 27  LTQLPVTQYPNISPPK-------------VTILADYPGANNELLIKAVVIPLERAINGAP 73

Query: 85  GIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+   +     +    I   F            +   +  V +KL     +  +  T E+
Sbjct: 74  GLKYITSDAGNDGEANIQAVFNLGTDPNQATLAIQNRVASVVNKLPPIVVREGVKITREE 133

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++      D   +             I ++   +              +     P R
Sbjct: 134 PNMLLYVNLYSDDPQADQKFLFNFADISLISELKRVDGVGFADILGNREYAMRIWLKPDR 193

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     +  ++       +        G    + S   +Y+++     +           
Sbjct: 194 LTAFKVSPEEVMESLSAQSLEASPGKAGESSGKRSQAFEYVLKYPGRFT----------- 242

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                ++    ++      L        +       + 
Sbjct: 243 --TKEEYENVVIRASANGEILHLKDIADVEFGSSMYDIYSTLDGKPSAAIVLKQSYGSNA 300

Query: 322 NFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
           +  I+     L  + ++         +          S      T      LV IV+F+ 
Sbjct: 301 SQVIKDVKAKLEEISKSTFPKGMHYEISYDVSSFLDASIDKVLHTLIEAFVLVGIVVFVF 360

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           +   +  L+   ++ +++I T A +   G TL L ++  +VL IG+ VD+ I+V E +  
Sbjct: 361 LGDWRSTLIPAVAVPVSLIGTFAFMQYFGITLNLITLFALVLAIGIVVDNAIVVIEAVHA 420

Query: 441 ENRKNQSVFCSLDM----GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
              +      +         + A   I        I    L    G   R F+ITM  +I
Sbjct: 421 IMEEEGLDPLAATRKAVSQIAGAVIAITFVMAAVFIPVGFLSGPVGIFYRQFSITMATAI 480

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           ++S F A+++  A+   +++                             
Sbjct: 481 VLSGFVALTLTPALCAMLLKPHTHDKRRSPVGRFLDAFNRGFGRTTDGY 529



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 81/233 (34%), Gaps = 6/233 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              S      S  +       +++  Y    S     V   +++      P         
Sbjct: 270 EFGSSMYDIYSTLDGKPSAAIVLKQSYGSNASQVIKDVKAKLEEISKSTFPKGMHYEISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
                    I K +  +I + + + I +++    W   L     + + +  T  F   FG
Sbjct: 330 DVSSFLDASIDKVLHTLIEAFVLVGIVVFVFLGDWRSTLIPAVAVPVSLIGTFAFMQYFG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I  NL  + A++  IG  V++ +VV + +   M+     +       K++++  G  +  
Sbjct: 390 ITLNLITLFALVLAIGIVVDNAIVVIEAVHAIMEEE--GLDPLAATRKAVSQIAGAVIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +       +P+    G V      F+I MA  IV++   ++ +   +   +  
Sbjct: 448 TFVMAAVFIPVGFLSGPVGIFYRQFSITMATAIVLSGFVALTLTPALCAMLLK 500



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 69/209 (33%), Gaps = 7/209 (3%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V          S  +               +    +   S A       V + ITE   
Sbjct: 789 YVKNDRDEMVPYSAFMRMEKVYGLSEITRHNMSNASEISGSAAPGYSSGEVIRIITETAS 848

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWI---RFKWYFALGAITTLILD 703
            +  +   I    IS + +R+G   + I  +  + +Y+ +      +   L  + +L   
Sbjct: 849 KALPRGYAIDWAGISLDEVRQGNQAIYIFIVSLVFVYLILSAQYESFILPLAVVFSLPAG 908

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +        + G+E N+ A  A++ LIG    + V++ +      + ++   +  D   +
Sbjct: 909 VFGAFLLLLVTGLENNIYAQIAMVMLIGLLGKNAVLIVEFA---SQKHSQGATALDATIE 965

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGS 792
                    + TS A    ++P+    G 
Sbjct: 966 GAKARFRPILMTSFAFIAGLIPLMFATGP 994


>gi|253570484|ref|ZP_04847892.1| multidrug resistance protein [Bacteroides sp. 1_1_6]
 gi|251839433|gb|EES67516.1| multidrug resistance protein [Bacteroides sp. 1_1_6]
          Length = 1065

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/695 (10%), Positives = 182/695 (26%), Gaps = 51/695 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFSLPVEQYPDIAPPTIM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S        IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSSATNAGTVSITVYFKQGTDPDMAAVNVQNRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           S  I      QI       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSILQMFSLSSPDDSYDENFLSNYISINIKPQILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +            + P  + Q     + ++      N       FG            
Sbjct: 175 DLMIMGGEYSMRVWMK-PDVMAQYKLIPSDITGVLAEQNIESATGSFGENSNETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                 I           
Sbjct: 234 YKGRLI----------------TPEEFGDIVIRSTDNGEVLKLKDIAEIQLGQDSYAYHG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +     +    L   +R              +      S   
Sbjct: 278 GMDGHPGVSCMVFQTAGSNATEVNQNIDELLEEVRKDLPKGVELTQIMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    + +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDFRSTLIPLVGVIVSLIGTFAFMAMAGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIIVVEAVQARFDVGYRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSI 523
            G        F +TM +++ IS   A+++  A+   +                 +  K+ 
Sbjct: 458 GGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLKPYINEDGTQKNNFAARFRKAF 517

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + + I   R       +     +    +  T       + +G + + V
Sbjct: 518 NSAFDILIEKYKNVVLIFIKRRWLAWSLLVCSVVLLVFLMNTTKTSLVPDEDQGVVFVNV 577

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L+     +E ++   +        +            S     +L++      
Sbjct: 578 STAAGSSLTTTDEVMERIEKRLMDIPQIKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +       V  + +  +    +  +    I
Sbjct: 638 PNDEDNVQAVIGQVYGRTAD-IKDASVFAISPGMI 671



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 89/201 (44%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +     +LE V+K + + V L+ I ++         E+++  I  +I+  + + +++   
Sbjct: 301 NQNIDELLEEVRKDLPKGVELTQIMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +   L  +  +I+ +  T  F A+ G   NL  + A++ +IG  V+D ++V + ++  
Sbjct: 359 -DFRSTLIPLVGVIVSLIGTFAFMAMAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++  GG+       F + MA  
Sbjct: 418 FDVGYRSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +   +  
Sbjct: 476 VGISAINALTLSPALCALLLK 496



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 76/253 (30%), Gaps = 12/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E   +
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGDAIKAVQETAVQ 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I  GI  ++I  I   +Y      +      + ++
Sbjct: 850  ALPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALY----ESFIIPFAVLLSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRD 759
               +  +  F  +FG+E N+     ++ LIG      +++     +         +    
Sbjct: 906  PCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERRKAGMGLIA 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +    L   + T++     + P+ +    G +   S    +  G+ +   + +FI 
Sbjct: 962  SAVSAAKARLRPILMTALTMIFGLFPLMLSSGVGANGNRSLGTGVVGGMTIGTLALLFIV 1021

Query: 817  APILLFIYDWRAK 829
              + +     + +
Sbjct: 1022 PTLFIAFQWLQER 1034


>gi|312879280|ref|ZP_07739080.1| acriflavin resistance protein [Aminomonas paucivorans DSM 12260]
 gi|310782571|gb|EFQ22969.1| acriflavin resistance protein [Aminomonas paucivorans DSM 12260]
          Length = 1032

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/615 (11%), Positives = 167/615 (27%), Gaps = 44/615 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R    +V+    +   GLL      + +     FP       +       G S  V++ 
Sbjct: 8   LRRPVTVVMCTLALVIFGLLALKAMGVQRIPDVDFPLVTVTTVMK------GASATVMDH 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D  D +   L          +        S  + ++  T+ F   R  +  A  V   + 
Sbjct: 62  DVADVIEEKLSS--------ISGIESLASSSYEGRSVTTVQFDLGRDVDAAAADVRDKVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S L  + +  ++   T  + ++V             ++ + ++ + R   +      
Sbjct: 114 LALSDLPDEAETPVVQKFTIGDDALVTVAVLGPASYREKVQFADKVAKAR---LQSVSGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      ++    DP+ L     T   +S      +             +      
Sbjct: 171 GDVGTPGLREREIRLWLDPALLEARSLTVKDVSDAIKNKHVELPAGSVQTDRRKVELRLT 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++                      +                 +    A   DG
Sbjct: 231 GEYGTVEDL--------------------ASLPVAVRKGSVIRLRDVARVEDGFAERTDG 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +       +   +     +    +   LR  +       V          S  
Sbjct: 271 ASYNGQGVLFLTVRKQRGANEVAVADGTLKMLEELRREAPKGIELKVLSNQADFVRRSMK 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      L  +++   +   +   VA  +I + ++ +   +  LG ++   ++ GI
Sbjct: 331 GVASNVMQAVALCSLIMLFFLRTLRATFVAVITIPVCLLGSFLFMKGLGLSVNNLTMMGI 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD+  +V E I     +      +  +G      ++     T +     + F 
Sbjct: 391 SLAVGMVVDATTVVLENIHRHMEEGMPALRASQVGTDEVAFSVLGGATTTVAVFAPVAFM 450

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G     F IT+  +IL+S+  ++S+   +   I+       +          +   
Sbjct: 451 GGIVGRFFYSFGITVVCTILLSLLLSLSLTPFLCSRILHKDHPGRLARWVEGLLEGLEQA 510

Query: 538 IAIQFMR---ARFWGVGISILFSICSICL-LFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             +   +    R+  +G ++      +          +  D +G   + V       L  
Sbjct: 511 YRVALEKAVAFRWVTLGAAVGLFALGLFFAAHVGTGFFPSDDQGSFNISVELPSGTSLEE 570

Query: 594 VRSNLESLQIGDISF 608
               L  +     + 
Sbjct: 571 TERLLVKMDRQVRTD 585



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 73/168 (43%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I  ++++   + + + I+F+ +      + +L L      G   L G   ++ +   ++ 
Sbjct: 843  ITALLVAIALVYLVMAIQFESFLHPFTVMFSLPLLTPGAFGLLFLAGNNLDMMSFMGIIL 902

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G  VN+ +++ D + +     T  ++       +    L   + T+++  +  LP+A+
Sbjct: 903  LVGIVVNNGIILVDFINQERARGTNKVA---AALAAGPLRLRPILMTAVSTMVGSLPVAL 959

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G  +    A+ +  G+V +   ++F+   + L + D R +   +
Sbjct: 960  KLGEGAEMRQPMAVAVVGGLVTSTLLTLFVVPVVYLVLDDARDRARAL 1007



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 6/217 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R      +  D +  N  G     VR Q    +       L+M+++   E      +
Sbjct: 256 DVARVEDGFAERTDGASYNGQGVLFLTVRKQRGANEVAVADGTLKMLEELRREAPKGIEL 315

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +        + R +       +   A+  LI ++          A+ T+ + +  +  F 
Sbjct: 316 KVLSNQADFVRRSMKGVASNVMQAVALCSLIMLFFLRTLRATFVAVITIPVCLLGSFLFM 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G+  N   +  +   +G  V+   VV + +    +     +          +E    
Sbjct: 376 KGLGLSVNNLTMMGISLAVGMVVDATTVVLENIH---RHMEEGMPALRASQVGTDEVAFS 432

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
            +  +        P+A  GG V     SF I +   I
Sbjct: 433 VLGGATTTVAVFAPVAFMGGIVGRFFYSFGITVVCTI 469


>gi|190892544|ref|YP_001979086.1| acriflavin resistance (multidrug efflux transporter) protein
           [Rhizobium etli CIAT 652]
 gi|190697823|gb|ACE91908.1| probable acriflavin resistance (multidrug efflux transporter)
           protein [Rhizobium etli CIAT 652]
          Length = 1051

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/634 (9%), Positives = 166/634 (26%), Gaps = 43/634 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++  +++   GL            +   P                      +  
Sbjct: 23  RRPILALVFNTLMVVAGLAA-----YVGVEVRELPDVDRPVVT---------VRTTFDGA 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  L    +   + +        +    Q+++TL F+D+      A+ V   +  
Sbjct: 69  SPQTIDQELTKVIEGAVARVSGLKSISSTSSFGQSRVTLEFSDAIDLAVAANDVRDAIGR 128

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +V       +I+       ++     + +  +  + ID++   +   
Sbjct: 129 ITQNLPDEADAPQIVKADSDSSAIMRLAVTSTKLNMD--DLTQLVENEVIDRLASVDGVA 186

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D   L     T   ++                 R          
Sbjct: 187 DVEEYGDQEKVFRVDVDQGALASRGLTIGDLTKALDNAALDVPAGSLKSRTQDIVVRATA 246

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + + + L                          R        +           
Sbjct: 247 NLQTPADFANVMLQD------------------------RVRLGDVATVTLGPRDGGTAL 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +              L           +   +     G+   
Sbjct: 283 RSNGKPGIGLGIIRQAQSNTLNISTGIKAAVEQLSKTLPEGTTIAITSDDAVFIQGAIHE 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + A +V  V+++ +   +  ++   S+ + +I TLA + ++G ++ + ++  IV
Sbjct: 343 VVLALLLAAIIVTAVIYLFLRDWRATVIPAVSMPVALIGTLAAIYMVGFSINILTLLAIV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  +  T     + L F  
Sbjct: 403 LATGLVVDDAIVVLENIVRRRAEGMGPRAAAVLGTREVFFAVIATTATLAAVFIPLSFLP 462

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F   +  S+ +S   A+++   +   ++    ++                 
Sbjct: 463 GQVGGLFREFGFVLAFSVGLSSIVALTLCPMLASRMLTKPMIEDHGALGRVGGAFASLYK 522

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      V I       +  L+    +   +  +    + ++       S +    
Sbjct: 523 WALHGCLNAPFVVILFSVMFAAAALIAFSTVKSELTPEEDRSMVMMRLTTPQGSSLEYTR 582

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           + +Q+ +   Q     ++               +
Sbjct: 583 DKMQLLEEHLQPLVDSRDIRNVFSISGQGGSLNS 616



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 93/248 (37%), Gaps = 7/248 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+    V L  V +     + G  + ++       L  ++    +++  +  ++   +++
Sbjct: 257 VMLQDRVRLGDVATVTLGPRDGGTALRSNGKPGIGLGIIRQAQSNTLNISTGIKAAVEQL 316

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLI 701
           ++ +P  T            +  I + ++ ++++AI +   I      W   +    ++ 
Sbjct: 317 SKTLPEGTTIAITSDDAVFIQGAIHEVVLALLLAAIIVTAVIYLFLRDWRATVIPAVSMP 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  TL    + G   N+  + A++   G  V+D +VV + +   ++     +  R   
Sbjct: 377 VALIGTLAAIYMVGFSINILTLLAIVLATGLVVDDAIVVLENI---VRRRAEGMGPRAAA 433

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
                E     + T+       +P++   G V      F   +AF + +++  ++ +   
Sbjct: 434 VLGTREVFFAVIATTATLAAVFIPLSFLPGQVGGLFREFGFVLAFSVGLSSIVALTLCPM 493

Query: 819 ILLFIYDW 826
           +   +   
Sbjct: 494 LASRMLTK 501



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
              + + + + +  +F+   +   I    + +      FAL   G   N+ +   ++ L+G
Sbjct: 864  GFAIVIIFLVLAAQFESVLS-SLIIMSTVPLGLACAVFALIITGSSLNIYSQIGLVLLVG 922

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                + +++ +      +L       R  I+K+    L   + T +A  +  +P+     
Sbjct: 923  VMAKNGILIVEFAN---QLRDRGEDVRSSIEKACALRLRPVMMTMIATILGGVPLVFAHG 979

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G     +    +  G+  A   ++FI     L +  +   +A
Sbjct: 980  AGAEARVALGWVIVGGLGFATLVTLFITPVAYLLLARFAKPHA 1022


>gi|295690371|ref|YP_003594064.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
 gi|295432274|gb|ADG11446.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
          Length = 1023

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/681 (9%), Positives = 174/681 (25%), Gaps = 54/681 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   + +L+ ++   G             + +FP                   +     
Sbjct: 11  RNPVPVSLLFVLLMIAGAAA-----YALLPVKQFPDVSFPEIT---------VAVTQSGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    ++  + FA     +   + V   +  
Sbjct: 57  APSEMESQVTRLVEDAAASVPGVKHLTSTVSLGSSETKVEFAVGADAQRALEDVRSAIDR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L        +         I+       ++   A + S  +       +       
Sbjct: 117 IRVDLPQGIDPPSVTRRDTDGQPILYYAVTAPKL--SATQLSWFVDNTVARALQGVAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +  ++    D  R+  L  T  +++       +   G    +     +     
Sbjct: 175 LVTRTGGLDREINVLLDIQRMNALGVTAPQVNSALRQFTDDASGGRAELGDREMTVRVLG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 ++  + +                         R         +G          
Sbjct: 235 GAVSIDQLRDLQIPLR---------------------GRAVRLGDIAEVGDGAGEARGFA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +     S     S   T          L   +  ++        V     S   
Sbjct: 274 RVNNVPVAAFQISKTKTASEVETETNVVKALDALAKANPGVRFTK-VMSTVTETRASYQA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L  +V+ + +   +  L++  ++ L++I T A++ LLG +L + ++  + 
Sbjct: 333 TIHVLIEGMILAALVVMLFLRDWRATLISAVAMPLSLIPTFAVMHLLGFSLNIVTLLALT 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I +   + Q  + +   G       +  +  T ++    +    
Sbjct: 393 LVIGILVDDAIVEVENIEKRIARGQHPYRAALEGADAIGLAVVATTFTIVVIFTPVSMMQ 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F +T+ +++L S+  A  +   M  + +   +           +    D  
Sbjct: 453 STIGQFFREFGLTVAVAVLFSLVVARLVTPVMAAYFLVPARRPHEARPMPRFYRRALDWS 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD-------- 590
                R  +      + F    I  +            G I L +               
Sbjct: 513 LR---RRGWAIGLGGLFFVATLIIGIGLPKGFQPEGDSGYIFLNIQGEPGATRADMERAA 569

Query: 591 --LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
              + +                       L+    +         V   V+  + ++   
Sbjct: 570 AKATDILRAQADTDFVFSQVGADGDSTTGLIIGVLKADRVQTTKAVRNAVRPLLRQVADA 629

Query: 649 STIQNTEIVGPKISRELIRKG 669
             +   E  G      ++   
Sbjct: 630 RVVTGDEDGGDADVEVILASA 650



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 75/237 (31%), Gaps = 9/237 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ V       +                        ++            K    V  +
Sbjct: 258 DIAEVGDGAGEARGFARVNNVPVAAFQISKTKTASEVETETNVVKALDALAKANPGVRFT 317

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            + +T        +  I   I G+I++A+ +++++     W   L +   + L +  T  
Sbjct: 318 KVMSTVTETRASYQATIHVLIEGMILAALVVMLFL---RDWRATLISAVAMPLSLIPTFA 374

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G   N+  + A+  +IG  V+D +V  + +    K             +  +   
Sbjct: 375 VMHLLGFSLNIVTLLALTLVIGILVDDAIVEVENI---EKRIARGQHPYRAALEGADAIG 431

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              V T+    +   P+++     G     F + +A  ++ +   +  +   +  + 
Sbjct: 432 LAVVATTFTIVVIFTPVSMMQSTIGQFFREFGLTVAVAVLFSLVVARLVTPVMAAYF 488



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 84/246 (34%), Gaps = 8/246 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +        + V  ++  +            ++     +Q    ++    +  E +   
Sbjct: 750 QLAVPTMDGKTTVLESVADISFEAGPGHILRYDRERRASVQADFNNAAIIGQASEAIAAL 809

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTL 700
                  + +   +    +   +L    IV +      +   + + F+ +F  +  ++ L
Sbjct: 810 PIMQHLPAGVHEAKDGDEEDMVQLFSGLIVAMGAGVALVYAVMVLLFRSFFKPISILSAL 869

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +        L G+  +L  +  +L L+G +  + +++ +   +        +     
Sbjct: 870 PLSLGGAFIALRLAGLPLDLPVMIGLLMLLGLAAKNSILLVEFAIE---AEREGLDRFSA 926

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           ++++  E     + T++A    + P A+    G       A+ +  G+V +   S+ I  
Sbjct: 927 LERACAERSRPIIMTTVAMIAGMAPTALGLGEGAEWRQPMAVAVIGGLVSSTLLSL-ILV 985

Query: 818 PILLFI 823
           P++   
Sbjct: 986 PVVYEF 991


>gi|240139324|ref|YP_002963799.1| multidrug efflux system protein (acrB ou acrF) [Methylobacterium
           extorquens AM1]
 gi|240009296|gb|ACS40522.1| multidrug efflux system protein (acrB ou acrF) [Methylobacterium
           extorquens AM1]
          Length = 1052

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/680 (12%), Positives = 177/680 (26%), Gaps = 38/680 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   +   I  +G +           + ++P   P                V     
Sbjct: 8   RPIFAWAISLFIMMVGAISVA-----YLPVSQYPDVAPVTIQ---------VTAVYPGSP 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + +        +       +I  SFA           V   ++ 
Sbjct: 54  PERLYDGVTRIIEEELNGIPGLMYFESTSDTSGTAQIMASFAPGSNASQATVSVQNRIKR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L     +  ++        +     +        IE      R+ + ++       
Sbjct: 114 IESRLPRAVTQQGVIVEEASTSFLQFVTVSSPDGSVGEIELGDLAARRIVGELRRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP+RL     T   ++      N        G R   +      
Sbjct: 174 RATLF-STERALRIWIDPTRLVGFGMTAGDVTAAVGAQNAQIASGSVGARPATEGQRIVA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + +++                +    +                 +           
Sbjct: 233 NVLVRGQLT-------------TVKEFEDIVLRANPDGSLVRLRDVAEVELGGQSYQTQT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T        A L           V          S   
Sbjct: 280 RLDGRPTAGIGIQLAPGGNALATATGVKARIAQLSKTLPANVRVQVPYDTTPFVQVSIKQ 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV  V+F+ +   ++ L+    + + ++ T   L L G ++ + ++ G+V
Sbjct: 340 VLTTLAEAMALVFAVMFLFLQNVRYTLIPTIVVPVALLGTTGALLLAGFSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    I    +  +   V + FF
Sbjct: 400 LAIGILVDDAIVVVENVERIMGEEGLPPAEATRKAMGQITGAIVGITLVLVAVFVPMAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F+I M  SI  S F A+S+  A+   +     +K +              
Sbjct: 460 PGSVGVIYRQFSIAMATSIAFSAFLALSLTPALCATL-----LKPVAKGHGHAKGGFFGW 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
              +F R                +  L  + L  G    G +++        D   V  +
Sbjct: 515 FNRRFERGTHAYRSGVGGMLRRPVRALAVYALLLGALGWGYVRMPSSFLPIEDQGYVIVD 574

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +++             ++            +           +     +   T+++ +  
Sbjct: 575 VQTPPESSAGRTLDVVKRIEKHFAGEPGVANSTVLVGYGFSGQGQNAALAFVTLKDWKAR 634

Query: 658 GPKISRELIRKGIVGVIISA 677
           GP  +   I      V+   
Sbjct: 635 GPNDTAAAISDRANAVLGGL 654



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q      +        +       G+++A    ++    ++++ +P 
Sbjct: 260 VRLRDVAEVELGGQSYQTQTRLDGRPTAGIGIQLAPGGNALATATGVKARIAQLSKTLPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +             +  I++ +  +  +   +   +++  +   + L     + + +  T
Sbjct: 320 NVRVQVPYDTTPFVQVSIKQVLTTLAEAMALVFAVMFLFLQNVRYTLIPTIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G   L G   N+  +  ++  IG  V+D +VV + +     +    +   +   K++ +
Sbjct: 380 TGALLLAGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMGEEGLPPAEATRKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +PMA + GSV      F+I MA  I  +A  ++ +   +   + 
Sbjct: 438 ITGAIVGITLVLVAVFVPMAFFPGSVGVIYRQFSIAMATSIAFSAFLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 80/202 (39%), Gaps = 9/202 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L T  +    G  +  +L   + +  + +S   + + +   ++ W   
Sbjct: 834  DAMAEMERLAGQLPTGFDHAWTGQSLQEKLSGSQAVYLLALSLFCVFLCLAALYESWSIP 893

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  +  +   +   +    L  +  ++     ++T+IG +  + +++ +  ++   L   
Sbjct: 894  LAVLLVVPTGVVGAVFAMLLRDMPNDVYFKVGLITVIGLTAKNAILIIEVAKE---LAAQ 950

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAAS 810
              S RD   ++        V TS+A  + V+P+A+  G+      +    +  G+V A  
Sbjct: 951  GRSVRDAAMEACALRFRPIVMTSLAFILGVVPLAIATGASSNSQRAIGTGVLGGMVTATV 1010

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +IF A P+   +    A+  R
Sbjct: 1011 LAIF-ATPLFYVLIASAARGKR 1031


>gi|317968010|ref|ZP_07969400.1| RND family multidrug efflux transporter [Synechococcus sp. CB0205]
          Length = 1087

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/549 (13%), Positives = 158/549 (28%), Gaps = 36/549 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +GL+       P   ++  P+  P               + +  +
Sbjct: 9   KRPVLTTVCSILIVLVGLIAI-----PTLPIENLPNIAPP-------------QIQVTAN 50

Query: 62  EDDFVNGFLQMYS-DELRSFLKKE----GIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                +   +    + L   +        I   +     + + + F +          V 
Sbjct: 51  YSGANSLVTEQAVTNVLEQQINGVPGAAYISSLTTNTGASTVNVFFDEGTDINIDQVNVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L        +         ++  Q +  +        +  I  Q   Q+  
Sbjct: 111 NRVSLAMPQLPSQVSNTGVSVIQTTPSILLAYQVSSSEGQFDRAYLNGLIYEQLYYQLER 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q               DP++L     T  ++       N+   G + G      +
Sbjct: 171 IPGVAQATLFGGSNPAFWLFVDPNKLTANQLTADQVVSAVRSQNSVAIGGLVGGPPAGGN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y +          L     N         + +     G     +   +        
Sbjct: 231 QLFTYPI----------LVENNGNLVSVDQLNQLIVGRSPQGNLLRLQDVGEATYGFNTF 280

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
             +G  +              + +     E    L    RA   P               
Sbjct: 281 ATEGSDINGYPAITVGVYQTPESNALQVSEAVVNLMDQFRAQVPPGVTVQQIYNVGQFIE 340

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +         +   LVL++LF+ +   +  +V   +I ++++ T A +   G ++   +
Sbjct: 341 SAVGGVTDALGLAIVLVLVILFLFLQDWRATVVPSLAIPISLVGTFAFMKAFGFSINQLT 400

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL  GL VD  I+V E + +   +      +           I  S++  +   V 
Sbjct: 401 LLGLVLATGLVVDDAIVVIEAVAKNLEQGMKPRQAALECMGELIGAIIASSLVLMAVFVP 460

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F+    G   R FA+T+  SI IS F A++    M   I++ +K    +    +   L
Sbjct: 461 VAFYPGGIGIIYRQFALTIAFSIAISTFNALTFSPMMAGLILKTEKPPRPEGWRWTVAGL 520

Query: 534 IPDCIAIQF 542
           +      +F
Sbjct: 521 VIGLGFGKF 529



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 62/147 (42%), Gaps = 7/147 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +     + + +  T  F   FG   N   +  ++   G  V+D +VV + + KN+
Sbjct: 367 DWRATVVPSLAIPISLVGTFAFMKAFGFSINQLTLLGLVLATGLVVDDAIVVIEAVAKNL 426

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
                 +  R    + + E +G  + +S+      +P+A + G    +   FA+ +AF I
Sbjct: 427 ---EQGMKPRQAALECMGELIGAIIASSLVLMAVFVPVAFYPGGIGIIYRQFALTIAFSI 483

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++  +++   +P++  +     K  R
Sbjct: 484 AISTFNAL-TFSPMMAGLILKTEKPPR 509



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 81/219 (36%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R     G         + +     +   L             + +L       ++  
Sbjct: 863  NLYRTVLIQGVQALGKSSGQALSAIQQQFKALDFNNIGYAFTGIAALQLSAGSASVLVFG 922

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               + +Y+ +      +   +  + T+ L +   L F +L  I+ N+ A   ++TLIG +
Sbjct: 923  LGVLFVYLVLSAQYESYVTPVIILMTVPLAMLGALAFLSLRSIDLNIYAQVGLVTLIGLA 982

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ + + +  +   + +S+ +    +    +   + T++A+     P+ V    G
Sbjct: 983  AKNGILIVE-VAE--QHLESGMSYGEAAIAAAESRMRPILMTAIASLAGFFPLVVATTAG 1039

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +   S    +  G++VA   S+ +  P  + I +   +
Sbjct: 1040 ANSQQSLGTVIFGGLLVATVLSLGVVPPFYVAIKNLEER 1078


>gi|146301867|ref|YP_001196458.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Flavobacterium johnsoniae UW101]
 gi|146156285|gb|ABQ07139.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Flavobacterium johnsoniae UW101]
          Length = 1057

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/635 (12%), Positives = 186/635 (29%), Gaps = 46/635 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G+L  +     +  + ++P   P                     
Sbjct: 7   QRPVLSTVISVIIVILGVLGLI-----ELPISQYPDIAPPTV---------NVAASYTGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             D V   + +  +E  + ++       +     N  I + F      +  A  V   + 
Sbjct: 53  NADVVLKSIVIPLEEQINGVENMTYMTSTATNDGNASIKVFFKVGTNPDLAAVNVQNRVS 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S L V+  +  +  T  +  ++++     D                 + QI      
Sbjct: 113 RATSLLPVEVTQAGVTVTKSQSSNLLIFSLYSDDKAYDQTFLQNYAKINLVPQIQRVVGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P  ++Q     + +S      N       FG      +   Q
Sbjct: 173 GDVTVFGAKDYSMRIWLKPDVMQQYKLIPSDISAALAEQNIEAAPGKFGE---NGNQAFQ 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+++ K  ++                +    +       +         +          
Sbjct: 230 YVIKYKGRLT-------------SAKEFEEIVIKSVGNGQMLRLKDVAKVELGSLSYAST 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        S     +    I  +  L               +          S  
Sbjct: 277 IKTNGVESAAMAISQTPGSNARDVIINSKKLIEEAAKSFPKGMKYTIMVDVNENLDASIE 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV IV+F+ +   +  L+   ++ + ++ T   L+L G T+ L ++  +
Sbjct: 337 KVIHTLIEAFILVFIVVFIFLQDFRSTLIPAIAVPVAIVGTFFFLNLFGFTINLLTLFAM 396

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E +  +      S   +     +     I    +      + + F
Sbjct: 397 VLAIGIVVDDAIVVVEAVHAKLDHGYKSAKKATIHAMNEISGAIISITLVMAAVFIPVTF 456

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI-- 534
             G      + F IT+ ++I++S   A+++  A+   +++             + F    
Sbjct: 457 ITGSTGVFYKQFGITLAVAIILSAVNALTLSPALCALLLKPHGDDHEHKTTYLQRFYTAF 516

Query: 535 ---------PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        ++QF+  + W    SI+ +  ++  +     +  +  +    +    
Sbjct: 517 NVAFDNVTGKYKRSVQFLSVKKWIALASIVIAGVALVYMMKTTPSAFVPSEDQGTVFANI 576

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
           + P   S+ RS++ + ++  I+      +    + 
Sbjct: 577 SLPPSASMERSDIMAKKVDSIAKTIPGVKNTLRIV 611



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 90/248 (36%), Gaps = 6/248 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V   + + L  V            + +    E   +   Q    ++       + + ++
Sbjct: 251 SVGNGQMLRLKDVAKVELGSLSYASTIKTNGVESAAMAISQTPGSNARDVIINSKKLIEE 310

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
             +  P        +   +     I K I  +I + I + I ++I    +   L     +
Sbjct: 311 AAKSFPKGMKYTIMVDVNENLDASIEKVIHTLIEAFILVFIVVFIFLQDFRSTLIPAIAV 370

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + I  T  F  LFG   NL  + A++  IG  V+D +VV + +   +       S +  
Sbjct: 371 PVAIVGTFFFLNLFGFTINLLTLFAMVLAIGIVVDDAIVVVEAVHAKLDHGYK--SAKKA 428

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
              ++NE  G  +  ++      +P+    GS       F I +A  I+++A +++ ++ 
Sbjct: 429 TIHAMNEISGAIISITLVMAAVFIPVTFITGSTGVFYKQFGITLAVAIILSAVNALTLSP 488

Query: 818 PILLFIYD 825
            +   +  
Sbjct: 489 ALCALLLK 496



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 69/252 (27%), Gaps = 16/252 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A     ++             IS  N     +     +       A   + E+  + + 
Sbjct: 789  SAGNMAPITEFVKMTRVFGPESISRFNLFTSISITGAPKPGYSSGDAIKAIQEVAAENLP 848

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTL 700
                      T          +        I     + +Y  +      +      + ++
Sbjct: 849  AGYGYEFSGLTREELASGGETIF-------IFILCLVFVYFLLSAQYESYILPFAVLFSI 901

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               +     F  +F +  N+    +++ LIG    + +++ +     +      +     
Sbjct: 902  PFGLAGAYLFSIIFKLNSNIYLQISLIMLIGLLAKNGILIVEFA---LDRRRKGLPIVQA 958

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
              +     L   + TS A  + ++P+      G     S       G+++     +F+  
Sbjct: 959  AIEGAVARLRPILMTSFAFILGLVPLMFATGAGAVGNKSIGTGAVGGMLIGTILGVFVIP 1018

Query: 818  PILLFIYDWRAK 829
             + +     + K
Sbjct: 1019 VLFIIFQTLQEK 1030


>gi|148254296|ref|YP_001238881.1| RND family multidrug efflux protein [Bradyrhizobium sp. BTAi1]
 gi|146406469|gb|ABQ34975.1| Putative multidrug efflux transporter (RND family) [Bradyrhizobium
           sp. BTAi1]
          Length = 1032

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/618 (11%), Positives = 179/618 (28%), Gaps = 40/618 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  +GL  A      +  + ++P  +    ++           V    
Sbjct: 9   KRPVLSLVVSMLILLLGLRAAF-----ELPIRQYPK-LSNTVVN--------VTTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +  +       S  Q  + I +    +        +V   +  
Sbjct: 55  SADLIQGFITTPLEQAVASAEGVDYITSSSVQGTSTIQVFIKLNFDPNQALTEVLAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   +  +    ++  +T +  S++    + +++   AI  S  + R     +   +   
Sbjct: 115 VRYLIPRESNDPIVTKSTGQTTSVMYLGFSSEELSGSAI--SDYLTRVVQPVLSTVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P ++     + A ++      N           F+  +     
Sbjct: 173 AANILGGQTFAMRIWLNPEKMAGRNVSPADVAAAISANNFQSAAGQAKGYFIVSNVTTNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D                          +                 +           
Sbjct: 233 GLTD--------------------VNQFKRMIVKAKDGGFVRMEDIATVELAAQSTDASV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                           Q +    ++    L   L     P     V   +      S   
Sbjct: 273 AFNGERAIFIGVDATPQGNPLNIVKGVRALFPDLERNLPPSMKMKVAYDSTKFIQSSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L++I    ++  LG ++ L ++  +V
Sbjct: 333 VEHTLGEAVLIVIVVIFLFLASLRSVIIPVVTIPLSLIGVCTMMLALGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + ++   +   G       +    IT       + F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHLEEGRAPVQAALQGAREIVGPVISMTITLAAVYAPIGFLG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  S+++S   A+++   M   ++R  +           F  +    
Sbjct: 453 GLTGSLFREFAFTLAGSVIVSGVIALTLSPMMCSVLLRSAEEGRFARIVNRVFGAMTRWY 512

Query: 539 AIQFMRARFWGVGISILFSIC-SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             Q  R+  +    ++       +        +  +  +    +     +    + +   
Sbjct: 513 GRQLDRSLDYRPVTALFAVTILGLVGFLYMHTSKELAPEEDQGIVFSITKAPKYANIDYI 572

Query: 598 LESLQIGDISFQNFDGEK 615
                  D  FQ F    
Sbjct: 573 NFYTDKLDKVFQKFPETD 590



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 84/253 (33%), Gaps = 12/253 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       + +   + ++    +     F G                    +   +++ +
Sbjct: 253 VRMEDIATVELAAQSTDASVAFNGERAIFIGVDATPQGNPLNIV--KGVRALFPDLERNL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
              + +    ++         E+       V+I  + + +++         +  + T+ L
Sbjct: 311 PPSMKMKVAYDSTKFIQSSIDEVEHTLGEAVLIVIVVIFLFLA---SLRSVIIPVVTIPL 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +          G   NL  + A++  IG  V+D +VV + +    +      +      
Sbjct: 368 SLIGVCTMMLALGFSINLLTLLAMVLAIGLVVDDAIVVVENIH---RHLEEGRAPVQAAL 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +   E +G  +  ++       P+   G   GS+   FA  +A  ++V+   ++   +P+
Sbjct: 425 QGAREIVGPVISMTITLAAVYAPIGFLGGLTGSLFREFAFTLAGSVIVSGVIAL-TLSPM 483

Query: 820 LLFIYDWRAKNAR 832
           +  +    A+  R
Sbjct: 484 MCSVLLRSAEEGR 496



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 58/152 (38%), Gaps = 8/152 (5%)

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI-EFNLTAVAAVLTLIG 731
             + I + + +  +F+     L  + ++ + I   L     FG+   N+     +LTL+G
Sbjct: 851 GFALIIIFLVLAAQFESLRDPLVIMISVPMAIVGAL-IPLFFGLATMNIYTQVGLLTLVG 909

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                 +++ +   +        +  R  I+ S    L   + T+ A    ++P+     
Sbjct: 910 LITKHGILMVEFANE--LQLKEGVDRRTAIETSARIRLRPILMTTAAMVTGLIPLLTASG 967

Query: 790 -GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            G +   S  + +  G+ +    ++F+   + 
Sbjct: 968 AGAASRFSIGLVVVAGMSIGTLFTLFVLPAVY 999


>gi|295084932|emb|CBK66455.1| The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile
           Efflux-1 (HAE1) Family [Bacteroides xylanisolvens XB1A]
          Length = 1065

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 71/694 (10%), Positives = 184/694 (26%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFSLPVEQYPDIAPPTIM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S     +  IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSSATNAGSVSITVYFKQGTDPDMAAVNVQNRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           S  I      QI       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSILQMFSLSSPDESYDENFLSNYISINLKPQILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +            + P  + Q     + ++      N       FG            
Sbjct: 175 DMMIMGGEYSMRVWMK-PDLMAQYKLIPSDITGVLAEQNIESATGSFGENSNETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                ++           
Sbjct: 234 YKGRLI----------------TPEEFGDIVIRSSDTGEVLKLKDIADVQLGQDSYAYHG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +     +         R              +      S   
Sbjct: 278 GMDGHPGVSCMVFQTAGSNATEVNQNIDKFLDEARKDLPKGVELTQMMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I ++++ T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDFRSTLIPLVGIVVSLVGTFAFMAIAGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIIVVEAVQARFDVGYRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 GGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLKPYINEDGTQKNNFAARFRKSF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           I + F++ R+    +     +  + L+ T   +   D   G+    +
Sbjct: 518 NSAFDVMVDKYKTIVLLFIKRRWLTWSLLACSVVLLVFLMNTTKTSLVPDEDQGVIFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +            +       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLTTTDEVMERIEKRLMAIPQLKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q+       ++ ++    +  +    I
Sbjct: 638 PDDADNVQSVIGQVYALTADIKDASVFAISPGMI 671



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 99/280 (35%), Gaps = 9/280 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S   +               I  +    + + ++   ++  ++   +     D    +  
Sbjct: 219 SFGENSNETYQYTMKYKGRLITPEEFGDIVIRSSDTGEVLKLKDIADVQLGQDSYAYHGG 278

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG--- 669
            + +  V            T V + + K + E                 +  L       
Sbjct: 279 MDGHPGVSCMVFQTAGSNATEVNQNIDKFLDEARKDLPKGVELTQMMSSNDFLFASIHEV 338

Query: 670 IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +  +I + I +++ +++    +   L  +  +++ +  T  F A+ G   NL  + A++ 
Sbjct: 339 VKTLIEAIILVILVVYVFLQDFRSTLIPLVGIVVSLVGTFAFMAIAGFSINLLTLFALVL 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           +IG  V+D ++V + ++    +   S     +   ++       + +S+      +P++ 
Sbjct: 399 VIGTVVDDAIIVVEAVQARFDVGYRSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSF 456

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            GG+       F + MA  + ++A +++ ++  +   +  
Sbjct: 457 MGGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLK 496



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 77/253 (30%), Gaps = 12/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E  ++
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGDAIKAVQETAEQ 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I  GI  ++I  I   +Y      +      + ++
Sbjct: 850  SLPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALY----ESFIIPFAVLLSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRD 759
               +  +  F  +FG+E N+     ++ LIG      +++     +         +    
Sbjct: 906  PCGLMGSFLFARMFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERRKAGMGLIA 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +    L   + T++     + P+ +    G +   S    +  G+ +   + +FI 
Sbjct: 962  SAVSAAKARLRPILMTALTMIFGLFPLMMSSGVGANGNRSLGTGVVGGMTIGTLALLFIV 1021

Query: 817  APILLFIYDWRAK 829
              + +     + +
Sbjct: 1022 PTLFIAFQWLQER 1034


>gi|189465471|ref|ZP_03014256.1| hypothetical protein BACINT_01824 [Bacteroides intestinalis DSM
           17393]
 gi|189437745|gb|EDV06730.1| hypothetical protein BACINT_01824 [Bacteroides intestinalis DSM
           17393]
          Length = 1067

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/517 (11%), Positives = 145/517 (28%), Gaps = 36/517 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVFSAVISITIVILGII-----GLFTLPVEQYPDIAPPTVM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +     +  IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSTATNAGSVSITVYFKQGTDPDMAAVNVQNRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T   +   + +   +           +  +      Q+       
Sbjct: 115 ATGQLPGEVTQVGVTTMKRQTSILQMFSLHSSDNSYDENFLANYMSINLKPQLLRIAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +     P  + Q     + ++      N       FG            
Sbjct: 175 DMMIMG-GDYSMRVWMKPDVMAQYKLIPSDVTAALAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                ++           
Sbjct: 234 YKGRLI----------------TPEEFGEIVIRSTEDGEVLKLKDIADVELGKESYAYKG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +     +    L   +R              +      S   
Sbjct: 278 GMDGHNGVSCMIFQTAGSNATEVNQNIDNLLDEVRKDLPKGVELTQMMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I +++I T A +S+ G ++ L ++  +V
Sbjct: 338 VVKTLIEAILLVILVVYVFLQDIRSTLIPLVGIIVSLIGTFAFMSVAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQSRFDVGYKSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G        F +TM +++ IS   A+++  A+   +
Sbjct: 458 SGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALL 494



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 87/201 (43%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +     +L+ V+K + + V L+ + ++         E+++  I  +++  + + +++   
Sbjct: 301 NQNIDNLLDEVRKDLPKGVELTQMMSSNDFLFASIHEVVKTLIEAILLVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  +I+ +  T  F ++ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 359 -DIRSTLIPLVGIIVSLIGTFAFMSVAGFSINLITLFALVLVIGTVVDDAIVVVEAVQSR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++   G+       F + MA  
Sbjct: 418 FDVGYKSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +   +  
Sbjct: 476 VGISAINALTLSPALCALLLR 496



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 63/201 (31%), Gaps = 11/201 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            + ++                  G     E  + G   +I     ++IY+    +   +  
Sbjct: 838  DAIRAVKETAEISLPKGYGYDFGGITREENQQSGTTVIIFGICILMIYLILSALYESFIV 897

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I  + + +  T  F  + G+E N+     ++ LIG      +++     +      
Sbjct: 898  PFAVILAVPVGLMGTFLFAKIAGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERR 953

Query: 753  T-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +        +    L   + T++     + P+ V    G +   S    +  G+ + 
Sbjct: 954  KAGMGLIASAVSAAKARLRPILMTALTMIFGLFPLVVATGVGANGNRSLGTGVVGGMTIG 1013

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
              + +FI   + +     + +
Sbjct: 1014 TLALLFIVPALFVTFQWLQER 1034


>gi|326800225|ref|YP_004318044.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
 gi|326550989|gb|ADZ79374.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
          Length = 1065

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/701 (11%), Positives = 180/701 (25%), Gaps = 57/701 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G++  +     +  L +FP   P               + +    
Sbjct: 8   RPVLATVISILLVILGIIGIV-----KLPLQQFPDIAPPA-------------VQVTALY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     +    IT+ F      +  A  V  
Sbjct: 50  PGANAETVLRAVAPSLEESINGVENMSYMSSTASNDGSLMITVYFKLGTDPDQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-VISHAIEQSMEIIRQRIDQIGI 176
            +    S+L  +  +  + T  ++   I++     +          +       I ++  
Sbjct: 110 RVAQATSQLPAEVVQAGITTAKQQNSLIMVLDLYTEDEGTYDQTFMTNYAQINIIPELKR 169

Query: 177 SESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                Q  +        +    +P+++     T A++       N       FG      
Sbjct: 170 IPGVGQALVFGGSKDYSMRVWLNPNQMASYKLTPAEVMAAIQDKNVEAAPGKFGESSS-- 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                                       +       I                 I     
Sbjct: 228 --------------EAFEFVIKYKGKLNQPSDYENIIIRANADGSVLRLKDVARIELGAY 273

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +             A  + N                       +V      + 
Sbjct: 274 TYASHTRINGKAGLNIGVMQLAGSNANEIQIAIQEFMEKAAKDFPKGVKYLVLYNTKDSL 333

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    K T      LV +V+F+ +   +  L+   ++ + +I T   + L G ++ L 
Sbjct: 334 DQSIDQVKHTLIEAFVLVFLVVFIFLQDFRSTLIPAIAVPVAIIGTFFFMQLFGFSINLL 393

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IG+ VD  I+V E +  +          +     S     I    +      
Sbjct: 394 TLFALVLAIGIVVDDAIVVVEAVHAKMEHQHLPPKIATTSAMSEITGAIISITLVMSAVF 453

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F  G      R FA T+ ++I++S   A+++  A+    ++           LS  
Sbjct: 454 LPIGFMEGSTGVFYRQFAFTLAIAIVLSAINALTLSPALCALFLKDTPHHGEKKQQLSFK 513

Query: 532 FLIPDCIAIQFMR------------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                     F R             R+    ++ L ++  + +        G       
Sbjct: 514 DKFFVGFNTSFDRLTKNYVGSLRFLVRYKWFSMAGLAALLVVTIFMIKRTPTGFIPSEDQ 573

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
               ++      + +     +L+  +   QN    K   +   +                
Sbjct: 574 GFIAISLSMPVGASLERTTNALKEAEQHLQNTPFTKTLNIISGFNILTQATSPSSGVAFI 633

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                          +I+G    +    KG    + +   +
Sbjct: 634 LLKPHEERGEVKDINDIMGVVSQKLAAIKGANFFVFTFPTV 674



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/199 (18%), Positives = 79/199 (39%), Gaps = 8/199 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A    +E   K   + V    + NT+    +   ++    I   ++  + + I++     
Sbjct: 305 AIQEFMEKAAKDFPKGVKYLVLYNTKDSLDQSIDQVKHTLIEAFVLVFLVVFIFLQ---D 361

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + I  T  F  LFG   NL  + A++  IG  V+D +VV + +    K
Sbjct: 362 FRSTLIPAIAVPVAIIGTFFFMQLFGFSINLLTLFALVLAIGIVVDDAIVVVEAVH--AK 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  +     +++E  G  +  ++      LP+    GS       FA  +A  IV
Sbjct: 420 MEHQHLPPKIATTSAMSEITGAIISITLVMSAVFLPIGFMEGSTGVFYRQFAFTLAIAIV 479

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +++ ++  +      
Sbjct: 480 LSAINALTLSPALCALFLK 498



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 61/173 (35%), Gaps = 9/173 (5%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
             E+   G   +I     + +Y  +      +   L  I ++   I        + GI  N
Sbjct: 868  EEITSGGQSTIIFLLCLVFVYFLLAAQYESYILPLAVILSIPTGIFGVFAAIGMTGIANN 927

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            +    A++ LIG    + +++ +     ++   T         ++    L   + TS+A 
Sbjct: 928  IYVQVALVMLIGLLAKNAILIVEFA---VQGRKTGKPIGQAALEAAQLRLRPIIMTSLAF 984

Query: 780  FISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             + ++PM    G         +I  A G++      +FI   + +     + +
Sbjct: 985  VVGMIPMMSANGPSAQGNHSISIGAAGGMLSGVILGLFIIPVLFIVFQALQER 1037


>gi|167031852|ref|YP_001667083.1| acriflavin resistance protein [Pseudomonas putida GB-1]
 gi|166858340|gb|ABY96747.1| acriflavin resistance protein [Pseudomonas putida GB-1]
          Length = 1030

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/581 (12%), Positives = 154/581 (26%), Gaps = 37/581 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPVAPLPEADFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       + L F   +  +  A +V   +    ++L  D              S
Sbjct: 82  TQMTSSSALGSTTLILQFTLDKNIDTAAQEVQAAINTATARLPQDLPNPPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL             + S         Q+   E       + ++   +  +  P +L  
Sbjct: 142 PVLVMTVSSD-QMPGNDLSDYAETLLARQLSQIEGVGLINITGQLRPAIRVQAQPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           +  T A +                              +          ++   AN    
Sbjct: 201 IGLTLADLRQAI--------------------QQTSLNLAKGALYGEHSVSTIAANDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                     +   +   +   T
Sbjct: 241 HPEDYAQLIVSYRDGAPVHLKDVAKVINGAENAYVKAWSGDQPGLNLVIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V +        S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRVLAALPKLQEMLPASVEVSVLQDRTQTIRASLHEVELTLMIAVALVIGVMALFLRQW 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              +V    + +++I + AL+ +LG +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATMVVSSVLGVSLIASCALMYVLGFSLNNLTLVAIVISVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
                 +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GDDSRTAALKGAGEIGFTVVSISFSLIAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            ++++   +    +R    +                +       R       +  ++   
Sbjct: 481 VSLTLAPTLCALFMRRPPGEHKGGFGERLVKWYEKGLNRALAHQRLTLGVFGVTLALAVA 540

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
             +      + +   G I     A   V    +    ++L 
Sbjct: 541 GYVGIPKGFFPLQDTGFILGTSEAAADVSYPSMIEKHQALA 581



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 92/250 (36%), Gaps = 7/250 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V   +   +   +   + D     LV  +    + V     +     
Sbjct: 250 VSYRDGAPVHLKDVAKVINGAENAYVKAWSGDQPGLNLVIFRQPGANIVDTVDRVLAALP 309

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K+ E++P S   +      +  R  + +  + ++I+   ++  + +  + + A   ++++
Sbjct: 310 KLQEMLPASVEVSVLQDRTQTIRASLHEVELTLMIAVALVIGVMALFLRQWSATMVVSSV 369

Query: 701 I-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  +     + G   N   + A++  +G+ V+D +VV + +    +        R 
Sbjct: 370 LGVSLIASCALMYVLGFSLNNLTLVAIVISVGFVVDDAIVVVENIH---RHLEAGDDSRT 426

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +A
Sbjct: 427 AALKGAGEIGFTVVSISFSLIAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTLA 486

Query: 817 APILLFIYDW 826
             +       
Sbjct: 487 PTLCALFMRR 496



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 80/203 (39%), Gaps = 6/203 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + ++ +   E+    +I        +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 820  DAVSILDRTQRELGMPDSISGNFQGAAQAFQSSLSSQPWLILAALVAVYIILGVLYESFV 879

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L      G +F++  +  V+ LIG    + +++ D   +  + +
Sbjct: 880  HPLTIISTLPSAGLGALILLWAMGQDFSIMGLIGVVLLIGIVKKNGILLIDFALEAQRHH 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               ++    I ++        + T++AA +  +P+      G  +     I +  G++V+
Sbjct: 940  --GLTPEQAIHQACLTRFRPIIMTTLAALLGAVPLMFGFGTGAELRQPLGIAVVGGLLVS 997

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
             + ++F    I L +     +  
Sbjct: 998  QALTLFTTPVIYLALERLFHRRQ 1020


>gi|294667068|ref|ZP_06732294.1| acriflavin resistance protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292603160|gb|EFF46585.1| acriflavin resistance protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1043

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 73/656 (11%), Positives = 173/656 (26%), Gaps = 40/656 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  L   P+  P               +         V   +    ++  + ++    
Sbjct: 29  FTRLTLRELPAIDPPIV---------SVDVEYTGASAAVVESRITQVLEDALAGIEGIST 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                R   + I++ F  SR  E  A+ V   +  V+ ++    +   +         I+
Sbjct: 80  IEARSRNGSSDISIEFVQSRDVEAAANDVRDAVSRVSDRMPDQARPPEISKVEADADPIL 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               +        ++ S    R  +D+    +   Q     R    +    D  +L    
Sbjct: 140 WLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQVRIGGRQRYAMRIWLDRDQLAARE 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A +       N               +   +       +                  
Sbjct: 198 LTVADVEAALQNENVELPAGSIESAQRDFTLRVERSYLKPED------------------ 239

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                      G           +    A                     +  +      
Sbjct: 240 -FAKLPLNKGEGGYVVRLGDVARVELTSAERRAYFQSNGVPNVGLGIVRNSTANALDVAR 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A   A  ++          V          +      T      LVL+V+++ +   + 
Sbjct: 299 EARAQAEEVQKSLPKGTNIFVAFDTTTFIDAAVERVYHTLVEAVVLVLVVIWVFLGSARA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ + +I     L     ++ L ++  +VL IGL VD  I+V E I+      +
Sbjct: 359 ALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENIQRRIDLGE 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF-----AITMGLSILISMF 501
               +   G  +    +  +    +   + + F  G   R F     A+   ++I   + 
Sbjct: 419 PPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEGNTGRLFRELAVALAAAVAISAFVA 478

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP-----DCIAIQFMRARFWGVGISILF 556
             +++   M   ++R       +         +         +++    R W   + +L 
Sbjct: 479 LTLTLTPMMSSKLLRAHGQAKPNRFHHWFDGRMQAVSGAYGRSLERHVHRTWIFALLMLL 538

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
           ++ +   L     +     +      ++ + P       +  +  Q+ DI       +K 
Sbjct: 539 ALGASAWLMGRIPSELAPAEDRGNFQIMIDGPEGAGFDYTVGQMHQVEDILRPFVGPDKP 598

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            +      PG   +   +         +     T   TE+      +  +  G+  
Sbjct: 599 IVRANPRVPGGFGSSEEMHTGRVSVFLQDWEKRTRPTTEVADEVQQKLNVLSGVRA 654



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 70/168 (41%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    L G   NL +   ++ 
Sbjct: 861  LLTFGMALLVVYLVLAAQFESFAHPLVIMLTVPLAVLGALVGLWLTGGTLNLFSQIGIVM 920

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     S    I +S +  L   + TS+A  +  +P+ V
Sbjct: 921  LVGLAAKNGILIVEFAN---QLRDEGRSVHAAIVESASVRLRPILMTSIATVVGAIPLVV 977

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GG       +  + + FG+ ++   S+++       I  +      +
Sbjct: 978  AGGPGSASRATIGVVVIFGVSLSTLLSLYVVPAFYSLIAPYTKSPEAV 1025



 Score = 43.5 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 3/107 (2%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL    T+ + +         F    NL  + A++  IG  V+D +VV + +    + 
Sbjct: 357 RAALIPAVTVPVCLIAAFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENI---QRR 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                       +   +     + T+       LP+    G+    F
Sbjct: 414 IDLGEPPLVAAKRGTGQVAFAVIATTAVLVAVFLPVGFLEGNTGRLF 460


>gi|316931493|ref|YP_004106475.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Rhodopseudomonas palustris DX-1]
 gi|315599207|gb|ADU41742.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhodopseudomonas palustris DX-1]
          Length = 1049

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/622 (11%), Positives = 177/622 (28%), Gaps = 38/622 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +   +G L  L     +  + + P  +P                      
Sbjct: 9   RPRLAAVIALVTTLVGALALL-----RIPVAQLPDIVPPQVR---------VSTTYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D +   +    +     + K      S     +  + +SFA     +     V   +Q 
Sbjct: 55  ADVLEATVAQPIEAKVVGVDKMIYMKSSSGNDGSYTLDVSFALGTNPDINTVNVNNRVQN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   +         + +            +  +   +   +D++       
Sbjct: 115 ALSQLPAEVRLQGVNVQKRSSSMLQVINMYSVGQKYDQLFLTNYGLINVLDELSRVAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    +    D  +L  L    + +       N        G R +      Q+
Sbjct: 175 EATLFGRYAYSMRIWFDIEKLSSLGLVPSDVVAAISAQNVQAPVGRIGARPVPADQQFQF 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  ++             K  +    +                 +           
Sbjct: 235 NLQTQGRLT-------------KPEEFGAIVLRANQDGSVLRVADVARVELGAQNADTYA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T          L++      +  V   +      +   
Sbjct: 282 RLNGDPTIGIGIFLAPGANAINTAAAIRAKLDQLQSRFPESVVARVVYDSTVFVNDTIRA 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+++ +   +  L+   ++ ++++ T A+L+ LGA+L   S+  +V
Sbjct: 342 VLHTLLEAFVLVALVVYLFLGNFRASLIPIIAVPVSLVGTFAVLTALGASLNTVSMLALV 401

Query: 422 LGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +       ++ S   +     ++  + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEEQDLSPADATKKAMAQVTAPIIAITLVLLSVFVPIGF 461

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRF 531
                G   R FA+T+  ++LIS   A+++  A+          R   M+       +  
Sbjct: 462 LPGIMGELFRQFAVTISAAMLISAINALTLSPALCAVFLRHTGPRRGFMQKFSRGIDTAR 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 + I   R     + ++   +      L T       + +G   + V       +
Sbjct: 522 DGYTSTVRIALRRPALSVLAVAACGAGIWGLSLTTPSGFLPEEDQGAFFINVQLPDGASV 581

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
           +   + +  ++           
Sbjct: 582 ARTEATVIEVEKLVKQMPEVRD 603



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/438 (9%), Positives = 130/438 (29%), Gaps = 20/438 (4%)

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            +     + SI G+ L    +  +N  +  +++    +  +   +      + +       
Sbjct: 598  MPEVRDVLSIVGLSLLDNYSASNNAFMIVQLKPFADRKAASSSA-QALIGKTFGATQAVR 656

Query: 468  ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
               ++   +    G     GF   +             +   ++    +   +  +    
Sbjct: 657  TATVLPFNLPPVVGLSTAGGFQYQLESLEGAEPAAIAGVTNGLVAAANQNPLLTRVFSTY 716

Query: 528  LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-----YGIDFKGGIQLG 582
             +    +   I  +  ++    V         S+  L+ +  N     + ++ +G     
Sbjct: 717  NANAPSLYLDIDREKAQSLGITVNDIFSALQISLGGLYINNFNLFGRTWQVNLQGDASAR 776

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ-----YQPGDSVAQTRVLEM 637
                   D+ V  +    + +  I+          + R          G           
Sbjct: 777  RDLPNLWDIYVRNAKGAMVPLQSIASVRTVTGPAVITRYNNYRSVTINGSPAPGVSSGTA 836

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY---IWIRFKWYFAL 694
            +                        +E    G  G I++   +  Y   + +   W   +
Sbjct: 837  MAAMAEVSAKTLPPGYAFEWTGTAYQEHEAVGKTGYILALAVIFAYLFLVALYESWVIPV 896

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
              + ++ + +        +  +  +L A   ++ LI  +  + +++ +  ++  +     
Sbjct: 897  PVLLSVSIAVLGAFAGILIGRVTLDLYAQIGLVVLIALAAKNGILIVEFAKEQREA---G 953

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASS 811
            +S +   +          + TS+A  + ++P+    G+ +    + + P+  G++ A+  
Sbjct: 954  LSIKAAAEMGAKLRFRAVMMTSIAFILGLVPLVWADGAAMLARRNLSTPVFAGMLTASLI 1013

Query: 812  SIFIAAPILLFIYDWRAK 829
             I +   + +     R K
Sbjct: 1014 GIILIPMLYVVFQSLREK 1031



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 87/233 (37%), Gaps = 5/233 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++ V       Q  D   +        +        +++     +     ++    P S 
Sbjct: 264 VADVARVELGAQNADTYARLNGDPTIGIGIFLAPGANAINTAAAIRAKLDQLQSRFPESV 323

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
           +            + IR  +  ++ + + + + +++    +  +L  I  + + +  T  
Sbjct: 324 VARVVYDSTVFVNDTIRAVLHTLLEAFVLVALVVYLFLGNFRASLIPIIAVPVSLVGTFA 383

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                G   N  ++ A++  IG  V+D +VV + + + +      +S  D   K++ +  
Sbjct: 384 VLTALGASLNTVSMLALVLAIGIVVDDAIVVVENV-ERVMEEEQDLSPADATKKAMAQVT 442

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              +  ++      +P+       G +   FA+ ++  ++++A +++ ++  +
Sbjct: 443 APIIAITLVLLSVFVPIGFLPGIMGELFRQFAVTISAAMLISAINALTLSPAL 495


>gi|254515482|ref|ZP_05127542.1| RND transporter, HAE1/HME family, permease protein [gamma
           proteobacterium NOR5-3]
 gi|219675204|gb|EED31570.1| RND transporter, HAE1/HME family, permease protein [gamma
           proteobacterium NOR5-3]
          Length = 1040

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/567 (12%), Positives = 165/567 (29%), Gaps = 43/567 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            ++  ++I   GLL        +  L  +P                   + ++       
Sbjct: 2   ALVGSALIVAFGLLA-----FDRLPLREYPDIDSPI-------------VTVQTSYPGAS 43

Query: 67  NGFLQMYSDELR----SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              ++    EL     S ++       S    ++ +T+ F   R  ++ A+ V   + GV
Sbjct: 44  AAVVENKITELIENRLSGIEGIKTLSSSSYDGESTVTIEFNLDRDIDSAANDVRDRVSGV 103

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  +        +   E  I  S    +     A+E +    R   D+  + +   +
Sbjct: 104 LDNLPEEALPPETTKSNSDEQVIFWSHLVGEN--MSALELTDYARRYLEDRFAVLDGVAR 161

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  +  +    D + L     T   +                          N  L
Sbjct: 162 VRIGGGQIYSMRIWLDRNALVARGLTVTDVENALRSQ-------------------NVEL 202

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               ++ S                     +                 +    A       
Sbjct: 203 PAGTIKSSQRDFVVRIDRSYQVAEDFQELVLARGDDGYLVRLADVARVELSSAESRSMFR 262

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +       +++ +              +          +V          +    
Sbjct: 263 GNTESMVGVGIVKQSKANALSVGRAVQAEIVRVNEQLPDGMELVVGFDRSVFVDAAIDEV 322

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T  I   LV+IV+F+ +   +  LV   ++ +++I + ++L  LG ++ L ++  +VL
Sbjct: 323 FSTLFIAGVLVVIVIFLFLGDPRSVLVPALTVPISLIGSFSMLWALGYSINLLTLLALVL 382

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD +I+V E I     + +S   +   G  +    +  + +  +   + + F  G
Sbjct: 383 AIGLVVDDSIVVLENIHRRLVRGESALVASYRGSRQVAFAVIATTLVLVAVFIPITFLEG 442

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
              R FA       +  +F++   +    +   +      +      +   + + + +++
Sbjct: 443 NIGRLFAEFAVAMAIAVIFSSFVALTLGPVICSKLLSKDKVSNRLADKVEALSEAMELRY 502

Query: 543 MRARFWGVGISILFSICSICLLFTHGL 569
            +     V  S +F    +  +F    
Sbjct: 503 RKVLTPVVKRSWMFIPVLLICVFAAWQ 529



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 75/207 (36%), Gaps = 9/207 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A    +  V +++ + + L    +  +       E+     +  ++  I + +++     
Sbjct: 287 AVQAEIVRVNEQLPDGMELVVGFDRSVFVDAAIDEVFSTLFIAGVLVVIVIFLFLG---D 343

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    T+ + +  +       G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 344 PRSVLVPALTVPISLIGSFSMLWALGYSINLLTLLALVLAIGLVVDDSIVVLENIH---R 400

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                 S      +   +     + T++      +P+    G++      FA+ MA  ++
Sbjct: 401 RLVRGESALVASYRGSRQVAFAVIATTLVLVAVFIPITFLEGNIGRLFAEFAVAMAIAVI 460

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            ++  ++ +   I   +      + R+
Sbjct: 461 FSSFVALTLGPVICSKLLSKDKVSNRL 487



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIG 731
           +++ + + + +  +F+  F   AI    + +    G + L   G   N+ +   ++ L+G
Sbjct: 848 LLALLIVYLVMAAQFE-SFVHPAIILFTVPVALLGGLWGLQIVGATLNIYSQVGLIMLVG 906

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +  + +++ + +    ++      F   + +  ++ L   V T+    +  LP+ +  G
Sbjct: 907 LAAKNGILIVEFIN---QMRDAGFEFERSVIEGSSKRLRPIVMTAFTTVMGALPLVLSTG 963

Query: 792 S 792
            
Sbjct: 964 P 964


>gi|88807188|ref|ZP_01122700.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 7805]
 gi|88788402|gb|EAR19557.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 7805]
          Length = 1135

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 67/525 (12%), Positives = 143/525 (27%), Gaps = 33/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I  +GL+       P   ++  P   P                     +
Sbjct: 10  RPVLTTVCSILIVIVGLIAI-----PILPIENLPDIAPPTVK---------VRATYTGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++       +      + I ++FA     +     V   +  
Sbjct: 56  AVSVEEGVTTVLEQQINGVENMDFIKSNSSSDGVSAIDVAFASGTDGDINQVNVQNRVSL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQIGISE 178
              +L  + +K  +         +++              A   S  +  +  D I    
Sbjct: 116 AEPQLPEEVRKAGVTVNKASNSILLVYNFGSADPEQILYSAETISGLLDLKLTDSIKRVT 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                       +      DP++L     T+  +       N        G         
Sbjct: 176 GVGDLTYFGNRKLAFRLWLDPNKLSVFGLTSTDVVNQLTSQNRLVPAGQVGGEPSPKGQE 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + V+ +  +  +                   +   + G                +  +
Sbjct: 236 FTFTVQLQGRLRSVEEFENM------------IVRTADEGGIVRLRDVGSVQLGGESYAV 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L                +     +    + A                 N      S
Sbjct: 284 SATDLQGVPSVGLAVYQLTGSNALEVSDGVKKVLAEFEKSMPIGMKMEKIYDNTDFITAS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 +      LV+++LF+ +   K  LV   +I + +I T  L+   G +L   ++ 
Sbjct: 344 IKGVVNSLRDAVILVVLILFLFLQNWKATLVPGIAIPVALIGTFGLVLAFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+VL  GL VD  I V E    +  +  S   +        +S I  +++      + + 
Sbjct: 404 GLVLATGLVVDDAITVIEDTSTKKSEGLSALEAAKSTMDELFSAIIATSLVKFAVFLPVL 463

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           FF    G   + FA T+  SI IS F A++    +   ++  +  
Sbjct: 464 FFPGATGTIYKQFAATVIFSIAISTFNALTFSPMLSALLLARESK 508



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 55/144 (38%), Gaps = 6/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T G    FG   N   +  ++   G  V+D + V   +     
Sbjct: 369 WKATLVPGIAIPVALIGTFGLVLAFGFSLNQLTLFGLVLATGLVVDDAITV---IEDTST 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
             +  +S  +    +++E     + TS+  F   LP+  + G+       FA  + F I 
Sbjct: 426 KKSEGLSALEAAKSTMDELFSAIIATSLVKFAVFLPVLFFPGATGTIYKQFAATVIFSIA 485

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++  +++  +  +   +    +K+
Sbjct: 486 ISTFNALTFSPMLSALLLARESKD 509



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 79/241 (32%), Gaps = 9/241 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            DLS  +  L        +          L R     G   A     + +         L+
Sbjct: 882  DLSGKQIPLSEFFTVRETLGPTVVPHFNLYRAIKIEGTPAAGKSSGQAITAMKGTFETLN 941

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                          E+    +  VI +   + +Y+ +      +   L  + T+   +  
Sbjct: 942  PQGLGFDWTGISREEVKAGALAVVIFALGILAVYLVLSAQYESYSDPLIILMTVPTAMLG 1001

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L F AL G   N+ A   ++ LIG +  + +++ D      +      +  +    +  
Sbjct: 1002 ALAFLALRGEVLNVYAQVGLVMLIGLAAGNGILIVDMAN---QRMQAGANALEAARYAAG 1058

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + T++++    +P+    G+      S    +  G+++A   S+F+     + +
Sbjct: 1059 SRLRPILMTAISSLFGFIPLVFASGAGARSQTSLGAVVFGGLLIATVLSLFVVPVFYVVM 1118

Query: 824  Y 824
             
Sbjct: 1119 K 1119


>gi|21674110|ref|NP_662175.1| AcrB/AcrD/AcrF family multidrug resistance protein [Chlorobium
           tepidum TLS]
 gi|21647266|gb|AAM72517.1| multidrug resistance protein, AcrB/AcrD family [Chlorobium tepidum
           TLS]
          Length = 1063

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/675 (11%), Positives = 181/675 (26%), Gaps = 45/675 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +GL+      + Q  + RFP   P               + +    
Sbjct: 8   RPVLATVISVILVILGLVS-----MRQLSITRFPDIAPP-------------SVSVTASY 49

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +        +E  + ++       +     +  I + F      +  A  V  
Sbjct: 50  PGADAETVGRTVAPPLEEAINGVENMTYMTSTSSNDGSLSINVFFKQGTDPDQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  +  +  + T   +   I+L     +     A           +D +   
Sbjct: 110 RVAQATSQLPTEVNQIGISTIKRQNSQIMLINLASNVKAFDATFLQNYAKINIVDDLARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q     ++   +     P+++     +  ++S      N       FG        
Sbjct: 170 PGVGQVSVYGKMDYSMRVWLRPAQMAAYGLSPQEVSAAIQSQNLEAAPGQFGEMSGEPMQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                     +  +    +                 +       
Sbjct: 230 YVMKYRGK----------------FQRPEEYENIVIRANPDGSLLRLKDIARVEFGAYSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                + N        +               +   +      
Sbjct: 274 TVNSKVNGKPGVVMAVYQSPGSNANEVETQLRKVLEKASQNFPTGIEYSIPFSSKKVVDE 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  + T      LV +V+F+ +   +  L+   ++ + +I T   ++L G ++ + ++
Sbjct: 334 SIAQVQHTLIEAFLLVFLVVFLFLQDFRSTLIPAIAVPVAIIGTFFFMNLFGFSINVLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFC----SLDMGFSRAYSTIFDSNITALIA 473
            G+VL IG+ VD  I+V E +  +  + Q        S     + A  TI     +  + 
Sbjct: 394 FGLVLAIGIVVDDAIVVVEAVHAKIEEKQWPAKIATVSAMREITTAIVTITLVMASVFLP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
              L    G   R FA T+ ++ILIS   A+++  A+        +K  K          
Sbjct: 454 VGFLEGSTGVFYRQFAFTLAIAILISAVNALTLSPALCAIFLTDLHKHSKEKHSRFGGFG 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                     F   R    GI   F            L   + F              D 
Sbjct: 514 GRFVKGFNAGFDAVRQRYTGILDYFMRNRKVAFIGLALVTAVSFWMFKTTPTGFIPDEDN 573

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             V  ++ +     ++      ++   +         V     + ++ +  +    L  I
Sbjct: 574 GFVIVSVSTPPGASMARTQAVTDRADNILRTMPAIKKVISVTGINILTRSSSPSAGLMFI 633

Query: 652 QNTEIVGPKISRELI 666
           Q  ++      R++ 
Sbjct: 634 QLNDLKERGKVRDIK 648



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 69/248 (27%), Gaps = 10/248 (4%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +   V +S + S         +   N     +             A   V E+ +  +  
Sbjct: 797  SGEMVPVSSIISLKRVYGPDAVDHFNLFNAISINAMPAPGYSTGQAIQAVDEVSRTSLPA 856

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                     +                + ++       +   +   +      + ++   +
Sbjct: 857  GFTYDWKGQSREEIESSGGLF----FIFLLSVVFVYFLLSALYESYLLPFAVMFSIPTGL 912

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
                    L GIE N+    A++ LIG    + +++ +     ++     +   +   + 
Sbjct: 913  LGVFLGIKLAGIENNIYVQVAIIMLIGLLAKNAILIVEFA---LQRRVAGMPLVEAAMEG 969

Query: 765  INETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + TS+A    ++P+    G       S       G+ V     I +   + +
Sbjct: 970  AKARLRPILMTSLAFVAGLIPLLFVTGPAAMGNHSIGASAIGGMFVGMVLGIMVVPVLFV 1029

Query: 822  FIYDWRAK 829
                 + +
Sbjct: 1030 AFQGLQER 1037



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 58/149 (38%), Gaps = 9/149 (6%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + I  T  F  LFG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 359 DFRSTLIPAIAVPVAIIGTFFFMNLFGFSINVLTLFGLVLAIGIVVDDAIVVVEAVH--A 416

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG- 804
           K+       +     ++ E     V  ++      LP+    GS       FA  +A   
Sbjct: 417 KIEEKQWPAKIATVSAMREITTAIVTITLVMASVFLPVGFLEGSTGVFYRQFAFTLA--I 474

Query: 805 -IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            I+++A +++ ++  +         K+++
Sbjct: 475 AILISAVNALTLSPALCAIFLTDLHKHSK 503


>gi|325269377|ref|ZP_08135994.1| AcrB/AcrD family multidrug resistance protein [Prevotella
           multiformis DSM 16608]
 gi|324988298|gb|EGC20264.1| AcrB/AcrD family multidrug resistance protein [Prevotella
           multiformis DSM 16608]
          Length = 1086

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 77/694 (11%), Positives = 191/694 (27%), Gaps = 47/694 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G +      L    ++++P   P   IS+    +G        D
Sbjct: 8   KRPVLSTVISIFFVLLGAI-----GLVSLPIEQYPDIAPPT-ISIMTSYQG-------AD 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQ 120
               +N  +    + + + ++       +     +  IT+ F      +  A  V   + 
Sbjct: 55  AQTVLNSVITPLEESI-NGVENMTYIQSTATNNGSAMITVYFKQGTDPDMAAVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  +  +  +  +  +  ++++     D         +       +  +      
Sbjct: 114 QAQALLPAEVTRVGVTVSKRQSSNVIMYSLTTDDGRYDDEFLTNYNNINIVPMLKRISGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P +++Q     + +S      N       FG +         
Sbjct: 174 GDVQTPGVKTYSMRIWLRPEKMKQYGLVPSDVSAALAEQNIEAAPGSFGEQSSLKY---- 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                     +    I       +         +          
Sbjct: 230 ------------EYTMRYKGRLKTAEEYGNIIISSNTSGQTLHLRDVAKVELGGLQYSVA 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      + +  A  +     +      A  +    P     +E+        S +
Sbjct: 278 MKNNNRPAVIGMVNQVAGSNATQIADDVKTALADAQKQMPPGMKVTIEQDVTEFLFASIA 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV  V+++ +   +  L+   ++ + +I T   L + G ++ L +++ +
Sbjct: 338 EVVRTLFITLLLVFFVVYVFLQDFRSTLIPMIAVPVALIGTFFFLWVFGFSINLLTLSAL 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L I + VD  I+V E +  +      S   +     +     I    +      V + F
Sbjct: 398 LLAIAIVVDDAIVVVEAVHAKLDLGYKSALTAAIDAMNEISGAIISITLVMSAVFVPVSF 457

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFL 533
            GG +    R F +TM +SI+IS   A+++  A+          +  K +          
Sbjct: 458 IGGTSGTFYREFGVTMAVSIVISALNALTLSPALCAIFLKPHGREAGKKLSHIDRFHAAF 517

Query: 534 IPDCIAIQ---------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                 +           +  R       ++  I  +  +         D   G    ++
Sbjct: 518 NVQYEKVNRKYQKLVEKMISHRLITGLSVVVGIIALVLTMTFTKTGLVPDEDTGTLFAMV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +  P         +       ++   +   +  +V   +  G    Q+  +  +K     
Sbjct: 578 SMPPGTSQEETQKVTDQIDKMLASNPYIERREQIVGYNFLAGQGSNQSTFIIKLKPFAER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +     +   G  I+   I      +I+  I
Sbjct: 638 EYGVFDRIKSVFSGAGIAGLFIDPASSNMILGMI 671



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/387 (9%), Positives = 102/387 (26%), Gaps = 30/387 (7%)

Query: 468  ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
               +IA       G G   G + ++       +     + +  +  + +  +        
Sbjct: 680  GAQVIAFAPPMIMGYGVSNGLSFSLEDRTGGDLNKFFKVTQDYLAALNKRPEFSRALTTY 739

Query: 528  LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG--------------- 572
               +      + +   +         +         L+    N                 
Sbjct: 740  NPNYPQYMVDVDVAKAKQAGTSPAAILSVLQGYYGGLYASNFNAYGKLYRVMIQGTVESR 799

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +   G   + V     +        L  +       +        +         S    
Sbjct: 800  MSESGLSNIYVRTASGMAPVSEFCTLNRVYGPSNITRFNLFTSIAVNATPADGYSSGQAI 859

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFK 689
            + +E V +++                 + S          +I     + +Y+ +      
Sbjct: 860  QAVEEVARQVLPQGYSYEFSGLTQSEQQSSNS------TAIIFVLCIVFVYLILSAQYES 913

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            +   L  I ++   +     F  +FG   ++    +++ LIG    + +++ +   +   
Sbjct: 914  YLLPLAVILSIPFGLAGAFIFTMVFGHNNDIYMQISLIMLIGLLAKNAILIVEFALE--- 970

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
               T ++ R          L   + TS+A  + +LP+    G       +       G++
Sbjct: 971  RRRTGMAIRYAAILGAGARLRPILMTSLAMVVGLLPLMFASGVGHNGNQTLGAAAVGGML 1030

Query: 807  VAASSSIFIAAPILLFIYDWRAKNARI 833
            +     +F+   +       + +   +
Sbjct: 1031 IGTLCQVFVVPSLFAIFQYLQERIKPL 1057



 Score = 38.9 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 91/257 (35%), Gaps = 13/257 (5%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + + +N       +R   +    G              V            T++ + 
Sbjct: 245 YGNIIISSNTSGQTLHLRDVAKVELGGLQYSVAMKNNNRPAVIGMVNQVAGSNATQIADD 304

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF-KWYFA 693
           VK  + +            +   ++  L       +  + I+ + +   +++    +   
Sbjct: 305 VKTALADAQKQMPPGMKVTIEQDVTEFLFASIAEVVRTLFITLLLVFFVVYVFLQDFRST 364

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  +  + + +  T  F  +FG   NL  ++A+L  I   V+D +VV + +   + L   
Sbjct: 365 LIPMIAVPVALIGTFFFLWVFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLDLGYK 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
             S       ++NE  G  +  S+   +    +P++  GG+       F + MA  IV++
Sbjct: 425 --SALTAAIDAMNEISGAII--SITLVMSAVFVPVSFIGGTSGTFYREFGVTMAVSIVIS 480

Query: 809 ASSSIFIAAPILLFIYD 825
           A +++ ++  +      
Sbjct: 481 ALNALTLSPALCAIFLK 497


>gi|239815393|ref|YP_002944303.1| acriflavin resistance protein [Variovorax paradoxus S110]
 gi|239801970|gb|ACS19037.1| acriflavin resistance protein [Variovorax paradoxus S110]
          Length = 1036

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 74/554 (13%), Positives = 159/554 (28%), Gaps = 40/554 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+L+ ++   GLL           +  FP                     L   
Sbjct: 9   RNPIPAVMLFVLLSFGGLLS-----FNAMKVQNFPDIDLPTVT---------VSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + ++        ++     + + F   +  +   D V   +Q 
Sbjct: 55  APSQLETDVARKLENSIATVQGLKHITTKVQDGAATLIVEFRLEKPVQEAVDDVRSAVQR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  D +  ++         ++     I      A   S  +      ++       
Sbjct: 115 VRADLPADVRDPVVTKLDFAAQPVL--AFTIASSRMDAEALSWFVDNDITKKLLALPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  Q+  + DP++L+ L  + A +S                            
Sbjct: 173 AVNRVGGVTRQVHVDLDPAKLQALGASAADISRQLR-------------------QVQTE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++++ G      T        +          G RR        I   +A      
Sbjct: 214 SAGGRIDLGGSEQPVRTLATVQSADQLADMQIALSDG-RRIRLDQVARISDTIAEPRAAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     +     S            A LRA    I+L       V         
Sbjct: 273 LLNGKPVVGFEVARSRGASEVEVGRAIQKALAELRAQRPDIELTE-AFNFVEPVEEEYEG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+++ +   +   V+  ++ ++VI     + LLG ++ + S+  + 
Sbjct: 332 SLHLLYEGAILAVIVVWLFLRDWRATFVSAVALPMSVIPAFIGMHLLGFSVNVISLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +G+ VD  I+  E I    R  +S + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEVENIVRHLRMGKSPYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F  T  L++  S+  A  +   M  +I++       +   L+ +    +  
Sbjct: 452 GVAGKFFKQFGWTASLAVFASLVVARVLTPMMAAYILKPVVGAEKEPRWLTAYMRAVEWS 511

Query: 539 AIQFMRARFWGVGI 552
                +        
Sbjct: 512 THHRFKTMVLATLF 525



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 56/159 (35%), Gaps = 10/159 (6%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +A+++       W     +   L + +        L G   N+ ++ A+  ++G  V
Sbjct: 339 GAILAVIVVWLFLRDWRATFVSAVALPMSVIPAFIGMHLLGFSVNVISLLALSLVVGILV 398

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +V  + +   ++      S  +   ++ +E     + T+       LP A   G   
Sbjct: 399 DDAIVEVENI---VRHLRMGKSPYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGVAG 455

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                F    +  +     +S+ +A  +   +  +  K 
Sbjct: 456 KFFKQFGWTASLAV----FASLVVARVLTPMMAAYILKP 490



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 75/176 (42%), Gaps = 7/176 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            E+   ++  EL     + ++   + + I + + FK +   +  +  L L +        +
Sbjct: 832  EVGDAEVMTELFNSFGLAMLTGVLCIYIVLVLLFKDFLHPVTILCALPLALGGAFVGLLI 891

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++ ++  ++ L+G +  + +++ +     +      +S  D +  + ++     +
Sbjct: 892  GQKALSMPSLIGLIMLMGIATKNSILLVE--YAIVARRDHGMSRWDALRDACHKRARPII 949

Query: 774  YTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVVAASSSIFIAAPILLFIYD 825
             T++A    +LP+AV  G+   SF    A+ +  G++ +   S+ +   +  ++ D
Sbjct: 950  MTTLAMGAGMLPIAVGLGTADSSFRSPMAMAVIGGLITSTVLSLLVVPAVFTYVDD 1005


>gi|189499011|ref|YP_001958481.1| preprotein translocase subunit SecD [Chlorobium phaeobacteroides
           BS1]
 gi|189494452|gb|ACE03000.1| protein-export membrane protein SecD [Chlorobium phaeobacteroides
           BS1]
          Length = 605

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 114/462 (24%), Positives = 211/462 (45%), Gaps = 10/462 (2%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSK 125
              +    + +R+ + + G+    ++    + I ++      ++ +   +    +     
Sbjct: 152 QDAVVRAKEIIRNRVDQYGVAEPVIQSQGARRIIVALPGVSDEDRVRKLLRGSAKLEFKL 211

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
           +  +      +      ++          +      +   +  +  + +  +   ++   
Sbjct: 212 VKDNESLLEALERINSSLAENEVSKENPDLPEGDGAEGETVAEKSSNPLYDNIVVLENGR 271

Query: 186 SHRILIQLPGEQDP-SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
            +              R                  +                    YL++
Sbjct: 272 VYAPDYSREYLTGLFQRESIQKLLPKDSEIRLSARSIEGSDGAMFYDV--------YLLK 323

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
              E++G  +  A A F     +P V +  +  G  ++  +T  NIG+ +A+VLDG V +
Sbjct: 324 KTPELTGGVITEAKATFGASAVQPEVTMKMNSDGTAKWARITGANIGRRIAIVLDGAVYS 383

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           APV+   IP G + I+G   IE A  L  +L+AG+LP  + I+EER VG  LG+D I  G
Sbjct: 384 APVVESKIPGGSSVINGIDGIEEAQDLEIVLKAGALPAPVRIIEERTVGPTLGADYIRSG 443

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             +   GL L+ +FM+  Y K G   D ++ LN++  L++L+   A L+LP IAGIVL I
Sbjct: 444 LLSAAWGLFLVAVFMVFYYRKAGFSTDIALVLNILFVLSVLAGFSAALSLPGIAGIVLTI 503

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+AVD+N+L+ ERIREE  + +++  ++D G+S+A+S I DS IT L A  +L+ +G G 
Sbjct: 504 GMAVDANVLIFERIREEIAQGKNMRLAVDTGYSKAFSAIVDSQITTLGAGFLLYIYGIGP 563

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           ++GFA+T+ + I  S+FTA+ + + +   +I    M +    
Sbjct: 564 IQGFALTLMIGIAASLFTALVVTKVIFDLLIDRNLMTAKSFG 605



 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 81/205 (39%), Gaps = 4/205 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  K   +     I     VGP +  + IR G++        + +++   
Sbjct: 402 DGIEEAQDLEIVLKAGALPAPVRIIEERTVGPTLGADYIRSGLLSAAWGLFLVAVFMVFY 461

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++          L+L+I   L   A F    +L  +A ++  IG +V+  V++++R+R+ 
Sbjct: 462 YR-KAGFSTDIALVLNILFVLSVLAGFSAALSLPGIAGIVLTIGMAVDANVLIFERIREE 520

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       + R  +D   ++     V + +    +   + ++G   I  FA+ +  GI  
Sbjct: 521 IAQ---GKNMRLAVDTGYSKAFSAIVDSQITTLGAGFLLYIYGIGPIQGFALTLMIGIAA 577

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +  +++ +   I   + D     A+
Sbjct: 578 SLFTALVVTKVIFDLLIDRNLMTAK 602



 Score = 89.8 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 106/291 (36%), Gaps = 43/291 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRF-------------------PSAMPK 41
           M+NN +  IL   +  + L    P +   S   +                      A  +
Sbjct: 1   MKNNRFKSILIVALTALALWSLWPTYQDYSYSKQLDRQETAEDSLSFVRDHRESIEAAAE 60

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             + LGLDLRGG +LVLEVD  D +        D  R  +          +   +     
Sbjct: 61  KSLKLGLDLRGGMYLVLEVDLIDLIEEKAWNKDDTFRRIIADVR-----SKTAGSN---- 111

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                     A  + + +     +     +    V  +++EI + L +         A+ 
Sbjct: 112 ----------AQVIEVLVSEFQKRSIRMSRYFYEVRDSDEEIIVKLRKEA-----QDAVV 156

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
           ++ EIIR R+DQ G++E  IQ  G+ RI++ LPG  D  R+R+LL  +AK+ F  V  N 
Sbjct: 157 RAKEIIRNRVDQYGVAEPVIQSQGARRIIVALPGVSDEDRVRKLLRGSAKLEFKLVKDNE 216

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
           S    +  +      +       D  E  G              +  +V +
Sbjct: 217 SLLEALERINSSLAENEVSKENPDLPEGDGAEGETVAEKSSNPLYDNIVVL 267


>gi|29833379|ref|NP_828013.1| preprotein translocase subunit SecD [Streptomyces avermitilis
           MA-4680]
 gi|29610502|dbj|BAC74548.1| putative preprotein translocase SecD subunit [Streptomyces
           avermitilis MA-4680]
          Length = 584

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 104/532 (19%), Positives = 198/532 (37%), Gaps = 31/532 (5%)

Query: 45  SLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITL 100
            LG+DL GG+ + LE     E       +    D +   +   G+    ++   ++ I +
Sbjct: 43  RLGIDLAGGTSITLEAKSGQESAINKTNMNTAVDIMNRRVNGLGVSEAEVQTQGDRNIIV 102

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVD----------PKKNLLVTTTEKEISIVLSQN 150
           +       E    +V    +     +                    ++ +          
Sbjct: 103 NIPKGTNSEQARKQVGTTAKLYFRPVLATEVSGAAAASPTPSASNSSSKKATDKATEKAT 162

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
           +     + A  Q   +     D    S S      +       P     +         A
Sbjct: 163 SSGTPSATATSQGRAVTDALKDDPTPSASNSASASAKASSSPSPSASSGAEAEAAKLQAA 222

Query: 211 KMSFHKVLPNNSKKGFMFGVRF-------LRDSDGNQYLVEDKVEISGIHLNG-ATANFD 262
             +          K                      Q  V    E++G  +   +     
Sbjct: 223 YTALDCRKEGQRAKAGEGAKPTDTTLACGTNSGGQWQKYVLGPAEVAGTDVKKASAVYDT 282

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL-----DGRVLTAPVINQAIPSGKA 317
                  V + F   G+++F  +T                 DG V++ P +++A+  G A
Sbjct: 283 QSGAGWKVTMDFTSGGSKKFASITGKLAKNQEPQNQFAIVLDGSVVSDPRVSEALTGGNA 342

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           +ISG+F    A  LA +L  G+LP+         V A LG + ++ G  A   GL L+V+
Sbjct: 343 EISGSFDQTEAKDLANVLSYGALPLSFREQSVTTVTAALGGEQLHAGLIAGAIGLALVVI 402

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIAGIVLGIGLAVDSNIL 433
           ++++ Y    L+A  S+ ++  LT A+++LLG T+     LP++ G ++ IG+  DS I+
Sbjct: 403 YLVLYYRGLSLIAIASLLVSAALTYAIMTLLGPTIHFALNLPAVCGAIVAIGITADSFIV 462

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
             ERIR+E R+ +++  +++  + RA  TI  S+  + +A  VLF    G V+GFA T+G
Sbjct: 463 FFERIRDEIREGRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLG 522

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           L+ ++ +       + +M  + R +   +           +     ++  R 
Sbjct: 523 LTTVLDVVVVFLFTKPLMTILARKQFFANGHSWSGLDPKRLGAQPPLRRTRR 574



 Score =  101 bits (251), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 82/239 (34%), Gaps = 9/239 (3%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +       G  +   +  +       ++    +  G +       E       +    
Sbjct: 288 WKVTMDFTSGGSKKFASITGKLAKNQEPQNQFAIVLDGSVVSDPRVSEALTGGNAEISGS 347

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               + + L  V      +      Q+   V   +  E +  G++   I    ++IY+ +
Sbjct: 348 FDQTEAKDLANVLS-YGALPLSFREQSVTTVTAALGGEQLHAGLIAGAIGLALVVIYLVL 406

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            ++   +L AI +L++    T     L G       NL AV   +  IG + +  +V ++
Sbjct: 407 YYR-GLSLIAIASLLVSAALTYAIMTLLGPTIHFALNLPAVCGAIVAIGITADSFIVFFE 465

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           R+R  ++      + R  ++++        + +   +F++   + +     +  FA  +
Sbjct: 466 RIRDEIRE---GRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTL 521


>gi|258623909|ref|ZP_05718862.1| Preprotein translocase subunit SecF [Vibrio mimicus VM603]
 gi|258583703|gb|EEW08499.1| Preprotein translocase subunit SecF [Vibrio mimicus VM603]
          Length = 300

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 142/279 (50%), Gaps = 6/279 (2%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R+    ISIL  + S+      GLN G+DF GG+    + +  V    +   L+ +    
Sbjct: 13  RYITGMISILLMVISLAAFAIKGLNMGLDFTGGMVTEAVIDSSVSKVQLIDQLQPVLGES 72

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           ++      E  +++R       +         +   +  I     I +  +VG ++ +EL
Sbjct: 73  VTVTPSGEEGRWVIRYPLAAEGTAPVD-----MASTLHHISEHVQIVSNSMVGSQVGQEL 127

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           + +G + ++I  +++L Y+  RF+W  A GA+  L+ D+   LGFFA+  +EFNLT  AA
Sbjct: 128 VDQGGLALLICLLSILGYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAA 187

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           VL ++GYS+ND +++ DR+R+ + +   +    D+ D+++  T  R++ TS    +++  
Sbjct: 188 VLAVLGYSLNDSIIIADRIRELLLVKQKT-PTADINDQAVIATFSRTMVTSGTTLMTISA 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + GG+ +  FAI M  G++    SSI I   +  ++ 
Sbjct: 247 LWLMGGAPLQGFAIAMFIGVISGTWSSISIGTVLPEWLG 285


>gi|293371133|ref|ZP_06617670.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
 gi|292633791|gb|EFF52343.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
          Length = 677

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/689 (10%), Positives = 181/689 (26%), Gaps = 49/689 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFSLPVEQYPDIAPPTIM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S     +  IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSSATNSGSVSITVYFKQGTDPDMAAVNVQNRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +               S  I      QI       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSILQMFSLYSPDDSYDENFLSNYISINLKPQILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +            + P  + Q     + ++      N       FG            
Sbjct: 175 DLMIMGGEYSMRVWMK-PDVMAQYKLIPSDITGVLAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                +I           
Sbjct: 234 YTGRLI----------------TPEEFGDIVIRSTDNGEVLKLKDVADIQLGQDSYAYHG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +     +    L                   +      S   
Sbjct: 278 GMDGHPGVSCMVFQTAGSNATEVNQNIDKLLEEASKDLPKGVELTQMMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I ++++ T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDFRSTLIPLVGIVVSLVGTFAFMAIAGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D   S + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIIVVEAVQARFDVGYRSSYMASIDAMKSISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 GGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLKPYINEDGTQKNNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           I + F++ R+    +     +  + L+     +   D   G+    +
Sbjct: 518 NSAFDMMVDKYKTIVLFFIKRRWLTWSLLACSVVLLVLLMNNTKTSLVPDEDQGVIFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +            +       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLTTTDKVMERIEKRLIEIPQLKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 +Q+        + ++    +  +
Sbjct: 638 PGDEDNVQSVIGQVYARTADIKDASVFAI 666



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/364 (12%), Positives = 123/364 (33%), Gaps = 9/364 (2%)

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+++    L+         F        L      IS V  +MI    Y     +  + +
Sbjct: 135 TSILQMFSLYSPDDSYDENFLSNYISINLKPQILRISGVGDLMIMGGEYSMRVWMKPDVM 194

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +++ LIP  I              S   +               I  +    + + +   
Sbjct: 195 AQYKLIPSDITGVLAEQNIESATGSFGENSDETYQYTMKYTGRLITPEEFGDIVIRSTDN 254

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            ++  ++   +     D    +   + +  V            T V + + K + E    
Sbjct: 255 GEVLKLKDVADIQLGQDSYAYHGGMDGHPGVSCMVFQTAGSNATEVNQNIDKLLEEASKD 314

Query: 649 STIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
                        +  L       +  +I + I +++ +++    +   L  +  +++ +
Sbjct: 315 LPKGVELTQMMSSNDFLFASIHEVVKTLIEAIILVILVVYVFLQDFRSTLIPLVGIVVSL 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T  F A+ G   NL  + A++ +IG  V+D ++V + ++    +   S     +   +
Sbjct: 375 VGTFAFMAIAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQARFDVGYRSSYMASI--DA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +       + +S+      +P++  GG+       F + MA  + ++A +++ ++  +  
Sbjct: 433 MKSISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVAVGISAINALTLSPALCA 492

Query: 822 FIYD 825
            +  
Sbjct: 493 LLLK 496


>gi|113954483|ref|YP_729337.1| acriflavin resistance protein acrF [Synechococcus sp. CC9311]
 gi|113881834|gb|ABI46792.1| acriflavin resistance protein acrF [Synechococcus sp. CC9311]
          Length = 1084

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/675 (11%), Positives = 177/675 (26%), Gaps = 32/675 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +      +   +I  +G++       P   +   P+                  ++    
Sbjct: 9   KRPVLTTVCSILIVLVGMISI-----PMLPIAYLPNIADPL-----------IQVIANYG 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLF 118
               +     +    ++  + +        +      + + + F  S   +     V   
Sbjct: 53  GANAEVTEQAVTNPLEQQINGVPGVSYISSNTDMTGNSTVNVYFDQSTDIDIDQVNVQNR 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +   N +L     +  +         ++  + +  +    A   +  +  Q    +   E
Sbjct: 113 VSLANPQLPEQVSEVGVSVKQSNPSILLAYEVSSSKGQFDAAYLNGLVYEQLYYPLSRVE 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                              DP++L     T+  +       N+   G + G         
Sbjct: 173 GVATVNIIGGATPAFWLFVDPNKLAANKLTSEDVINQVKSQNSVAVGGLVGGPPASGDQA 232

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             Y +          +     N         + ++    G     +   +          
Sbjct: 233 FTYPI----------VVKNNGNLISIDDFNNLILNRSPSGNLLKLKDVGEVRYGSNTFSA 282

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                                +     E         R+   P                S
Sbjct: 283 QAVDQNGHEALTIAVYQTPASNALDVSEAVVDQINQFRSTLPPGVTIDQIYNIGQFIESS 342

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                    +   LVLI+LF+ +   +  +V   +I ++++ T A L++ G ++   ++ 
Sbjct: 343 VDGVIDALGLAIVLVLIILFLFLQNWRATVVPSLAIPISLVGTFAFLNVFGFSINQLTLL 402

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+VL  GL VD  I+V E +     K      +        +  +  + +  +   V + 
Sbjct: 403 GLVLATGLVVDDAIVVIEAVSTNIEKGMKPREAALACMGELFGALLATALVLMAVFVPVA 462

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F+    G   + FA+T+  S+ IS F A++    +   I+  KK             +I 
Sbjct: 463 FYPGGTGIIYKQFALTIAFSVAISAFNALTFSPMLSGLILSQKKPPEPKGRSWIVVGVIV 522

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                +F  A F          I ++       +    +          +     +   R
Sbjct: 523 GLAFGRFSAASFGNWTYIAGIVIGALAGSNLPLIFKVFNSNFERLETTYSKLLKRMIQAR 582

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             + +  +  I   +F         +  +          L+     +        I    
Sbjct: 583 RIVLAGLVVGIVVTSFAFTILPTAFIPDEDQGYGMGIFQLQNGASLVETKKLGMQIAKVL 642

Query: 656 IVGPKISRELIRKGI 670
                ++   I  G 
Sbjct: 643 SEEDDVANASIINGF 657



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +     + + +  T  F  +FG   N   +  ++   G  V+D +VV + +  N+ 
Sbjct: 368 WRATVVPSLAIPISLVGTFAFLNVFGFSINQLTLLGLVLATGLVVDDAIVVIEAVSTNI- 426

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +  R+     + E  G  + T++      +P+A + G        FA+ +AF + 
Sbjct: 427 --EKGMKPREAALACMGELFGALLATALVLMAVFVPVAFYPGGTGIIYKQFALTIAFSVA 484

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++A +++   +P+L  +   + K 
Sbjct: 485 ISAFNAL-TFSPMLSGLILSQKKP 507



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 73/163 (44%), Gaps = 9/163 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            ++     +++Y+ +      +   +  + T+ L +   L F A+  I+ N+ A   ++TL
Sbjct: 919  LVFGLGVLIVYLVLSAQYESYITPVIILATVPLAMLGALAFLAIRSIDLNIYAQIGLVTL 978

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG +  + +++ + + +  +      S    + +S    L   + T++AA    LP+ V 
Sbjct: 979  IGLAAKNGILIVE-VAE--QKLKEGKSTVIAVVESAESRLRPILMTAIAALAGFLPLVVA 1035

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G +   S    +  G++VA   S+ +  P+ + + D  ++
Sbjct: 1036 NGAGANAQQSLGTVIFGGLIVATVLSVGVVPPVYVLVKDLESR 1078


>gi|113478392|ref|YP_724453.1| preprotein translocase subunit SecD [Trichodesmium erythraeum
           IMS101]
 gi|110169440|gb|ABG53980.1| protein-export membrane protein SecD [Trichodesmium erythraeum
           IMS101]
          Length = 461

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 137/527 (25%), Positives = 228/527 (43%), Gaps = 80/527 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR     + L  ++    +                 + + +  I LGLDLRGGS L +++
Sbjct: 1   MRRQNSYIALILVLVIASV-----------------TVLSQIPIRLGLDLRGGSQLTIQL 43

Query: 61  DE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKV 115
                        ++     + + +   G+    ++   Q++I +        E     +
Sbjct: 44  QTSEEIPTIDERVMEGVLKIVENRVNALGVSESVVQSLGQDQILVQLPGVNDPEQAERVL 103

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    +     ++ L +    +   +V  +   +     AIE+++E I +    I 
Sbjct: 104 GGTAQLDFREQLQSTEQQLAIEYQVQRQLLVEQELLKNSEDQEAIEKNLESIEKTNQAI- 162

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                                      ++ +     +      P        + V     
Sbjct: 163 -----------------------AQLFKEAIIKGQDLRDALAEPEAPGSNN-WNVALRFT 198

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S+G Q   E    ++G   +      D     P V + F E G                 
Sbjct: 199 SEGGQKFAELTKNLAGTGRSIGIFLDDKLLSAPTVSVEFAETG----------------- 241

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                           I  G A I G FT + A  LA  LR G+LP+ + IVE R VGA 
Sbjct: 242 ----------------ITGGSAVIQGTFTPQQANDLAVQLRGGALPVSVEIVENRTVGAT 285

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI +   A + GL+L+++FM++ Y   G++AD ++ +  + T+A  S+LG TLTLP
Sbjct: 286 LGRDSIQRSVYAGIGGLILVLIFMVLYYRLPGVIADVALVIYALFTIASFSILGVTLTLP 345

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAG +L IG+AVD+N+L+ ER REE R  ++++ S++ GF RA+S+I D N+T LIA V
Sbjct: 346 GIAGFILSIGMAVDANVLIFERTREELRAGKTLYRSVESGFYRAFSSILDGNVTTLIACV 405

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            LF+ G G V+GFA+T+G+ + ISMFTA++  R +M + I + + + 
Sbjct: 406 ALFWLGTGLVKGFALTLGIGVAISMFTALTCSRTLMFWTIGFSQFRK 452



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 91/234 (38%), Gaps = 4/234 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   +   +      E           G    Q      V+ +   +     I     V
Sbjct: 223 LDDKLLSAPTVSVEFAETGITGGSAVIQGTFTPQQANDLAVQLRGGALPVSVEIVENRTV 282

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ I++ +   I   I +LI++ + ++    + A   L++    T+  F++ G+ 
Sbjct: 283 GATLGRDSIQRSVYAGIGGLILVLIFMVLYYRLP-GVIADVALVIYALFTIASFSILGVT 341

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      +    ++          +  ++
Sbjct: 342 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKTLYRSVESGFYRAFSSILDGNV 398

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I+ + +   G  ++  FA+ +  G+ ++  +++  +  ++ +   +     
Sbjct: 399 TTLIACVALFWLGTGLVKGFALTLGIGVAISMFTALTCSRTLMFWTIGFSQFRK 452


>gi|237746532|ref|ZP_04577012.1| drug efflux pump transmembrane protein [Oxalobacter formigenes
           HOxBLS]
 gi|229377883|gb|EEO27974.1| drug efflux pump transmembrane protein [Oxalobacter formigenes
           HOxBLS]
          Length = 1036

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/615 (12%), Positives = 174/615 (28%), Gaps = 52/615 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V++   I   G++           +   P                     L   
Sbjct: 9   RRPVATVLVTVAILLAGIVA-----FNFLPVSPLPQVDFPTIR---------VRAKLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +       ITL F  SR  +  A  V   +  
Sbjct: 55  SPETMAATVATPLERSLGRIAGITEITSTSTLGTTDITLQFDLSRNIDGAARDVQSAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L      N          + ++   ++        +           ++  +E   
Sbjct: 115 ARALLPTGMPSNPTYRKINPADAPIMI-LSMTSGSLTRGQMYDAADTIVAQKLMQTEGIG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +  +  P +L +   +  ++       N ++     G            
Sbjct: 174 DVFVGGGSQPAVRIDLHPQQLSRYGISLEQVRNVITDTNVNRPKGFVGND---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN   KT K  + +                ++   +  V +  
Sbjct: 224 ----------SRQWKIEANDQAKTAKDYLPLIVHHASGATLRLADVADVTDSVQDVRNIG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++        I   +   +   T+E    L   L A         V          S + 
Sbjct: 274 MVNGEPCVMLIIFREPGANIIETVERVYELMPALAASIPESIDLNVVMDRTPTIRSSLAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I  GLV++V+F+ +   +   ++  S+ ++++ T  ++ L G +L   S+  + 
Sbjct: 334 VEFTLLISVGLVILVVFLFLRNVRATAISAISVPVSLVGTFTVMYLAGFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I          F +   G      T+   +I+ +   + +   G
Sbjct: 394 IATGFVVDDTIVVLENIMRHIEGGMKPFDAALKGAREVGFTVLSISISLIAVFIPILLMG 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP--- 535
           G      R FA+T+ ++IL+S+F +++    +    ++ +        P     L     
Sbjct: 454 GIIGRLFREFAVTLSVTILVSLFISLTTTPMLCALWLKRRDKTPGPGRPNRFNRLFNASE 513

Query: 536 -----------DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        +       R   + +    +      +      +     G +   + 
Sbjct: 514 HLFASLQLAYARTLKRAIDHRRITLLILMATIAFNVFLYIVVPKGFFPQQDTGRMFGVIR 573

Query: 585 ANRPVDLSVVRSNLE 599
           A++ +    ++  +E
Sbjct: 574 ADQSISFQAMQRKME 588



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/368 (12%), Positives = 108/368 (29%), Gaps = 11/368 (2%)

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           D+ I  L  T      G        I     +       + +       +      + + 
Sbjct: 136 DAPIMILSMTSGSLTRGQMYDAADTIVAQKLMQTEGIGDVFVGGGSQPAVRIDLHPQQLS 195

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
              +S   +          R + +    S  + I +     T      +         + 
Sbjct: 196 RYGISLEQVRNVITDTNVNRPKGFVGNDSRQWKIEANDQAKTAKDYLPLIVHHASGATLR 255

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D++    ++ ++ + +            ++  +          RV E++      
Sbjct: 256 LADVADVTDSVQDVRNIGMVNGEPCVM-----LIIFREPGANIIETVERVYELMPALAAS 310

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           I     +       P I   L       +I   + +L+             +  ++ + +
Sbjct: 311 IPESIDLNVVMDRTPTIRSSLADVEFTLLISVGLVILVVFLFLRNVRATAISAISVPVSL 370

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T     L G   N  ++ A+    G+ V+D +VV + +   M+     +   D   K 
Sbjct: 371 VGTFTVMYLAGFSLNNLSLMALTIATGFVVDDTIVVLENI---MRHIEGGMKPFDAALKG 427

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
             E     +  S++     +P+ + GG +      FA+ ++  I+V+   S+     +  
Sbjct: 428 AREVGFTVLSISISLIAVFIPILLMGGIIGRLFREFAVTLSVTILVSLFISLTTTPMLCA 487

Query: 822 FIYDWRAK 829
                R K
Sbjct: 488 LWLKRRDK 495



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 69/161 (42%), Gaps = 8/161 (4%)

Query: 673  VIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            ++I+   + +YI    +   +   +  ++TL       L    L G EF++ A+  VL L
Sbjct: 862  MLIALALVAVYIVLGMLYESFIHPVTILSTLPSAGVGALLALILAGSEFSVIALIGVLLL 921

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ D     +      +S  + I ++        + T+ AA    LP+A+ 
Sbjct: 922  IGIVKKNAIMMID--FALVAEREEGLSPENAIYQACLLRFRPIMMTTTAALFGALPLALG 979

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               G  +     I +  G++++   +++    + L++  ++
Sbjct: 980  HGDGAEMRIPLGISIVGGLMLSQLLTLYTTPVVYLYLDRFQ 1020


>gi|269961021|ref|ZP_06175390.1| multidrug resistance protein, putative [Vibrio harveyi 1DA3]
 gi|269834240|gb|EEZ88330.1| multidrug resistance protein, putative [Vibrio harveyi 1DA3]
          Length = 1037

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/651 (9%), Positives = 172/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVAALVLSMLLCVFGFVS-----FTKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +    R  +D+  +     
Sbjct: 115 AQRSLPDEADDPVVFKNNGSGEASLYINLSSSE--MDRTQLTDYAERVLMDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SIDLSGGLYKVMYVKLKPDLMAGRSVTASDITAALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +          +     ++           
Sbjct: 219 -----VRNDSTVMSVRTARTYNTPEDFQYLVVKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++         S   
Sbjct: 274 KSDGVVNISLGVVPQSDANPLEVAQAVRSEVDKIQKFLPDGTRLAIDYDATVFIERSIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        F++ + +S++ S   A+++   +   I++     +            L   
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNRFNRAVDKLFAKLESG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    +       ++ +         + +   +  +    +     R  D +    
Sbjct: 514 YRKALRGALKVRWAAPLVIVACMGGSYGLMNQVPAQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MSANMDIVEDRLMPLLGQGFLKSFSIQTPAFGGQAGDQTGFVIMILDDWNE 624



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARTYNTPEDFQYLVVKRASDNTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L   P        V + V+ ++ +I           +    +  + R        +
Sbjct: 279 VNISLGVVPQSDANPLEVAQAVRSEVDKIQKFLPDGTRLAIDYDATVFIERSIDEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNR 498



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        +     N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMFTVPMGVFGGFLGLVVMSQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    I F   I  +    L   + T+       +P+ +    G     +    + FG+
Sbjct: 931  QLRDRGIEFEKAITDAAARRLRPIMMTAFTTLAGAIPLIMSTGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A   ++F+   +   I        
Sbjct: 991  GFATLVTLFVIPAMYRLISAKTRSPG 1016


>gi|110598307|ref|ZP_01386582.1| protein-export membrane protein SecD [Chlorobium ferrooxidans DSM
           13031]
 gi|110340115|gb|EAT58615.1| protein-export membrane protein SecD [Chlorobium ferrooxidans DSM
           13031]
          Length = 637

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 118/487 (24%), Positives = 231/487 (47%), Gaps = 23/487 (4%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
           +   +  L    + +R+ + + G+    +    ++ I +       +  + + +    + 
Sbjct: 151 EKESDDALSRAKEIIRNRIDQYGVAEPVITTQGSRKIIIELPGISDQNRVRNLLKGTAKL 210

Query: 122 VNSKLNV-------------------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
               L                           +  ++  +     S        +     
Sbjct: 211 EFRLLRDPEVLVRTLDRINTYLVQNGTAPPAAVSDSSASKPVSASSPLPGAPAGAAPAVS 270

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL---LGTTAKMSFHKVLP 219
           S+            +++T + L +   + +        + ++    L   + +     L 
Sbjct: 271 SVAPSAPAAPATAATQNTAKPLYNVVGVSENGNAYTSEQSKEFVLSLLKRSDIQALLPLD 330

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
                     V    +   + YLV+   E++G  +  A A F  +  +P V +S +  G 
Sbjct: 331 TELLLAAKPDVGPSGEKLYSVYLVKKSPELTGGVITEAKATFGSEGVQPEVTMSMNSEGT 390

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
            ++  +T  NIGK +A+VLDG V +APV+   IP G + I+G  ++E A  L  +L+AG+
Sbjct: 391 SKWARITGANIGKRIAIVLDGAVYSAPVVQSKIPGGNSVINGIESLEEAKDLEIVLKAGA 450

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           LP  + I+EER VG  LG+D I  G  ++    + + +FM++ Y K G+ AD ++ LN++
Sbjct: 451 LPAPVRIIEERTVGPSLGADYIRAGMLSLSWSFLAVSVFMLLYYKKAGIAADIALILNIL 510

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           + L++L+   A+L+LP IAGIVL IG+AVD+N+L+ ERIREE   ++ +  S+++G+ RA
Sbjct: 511 IVLSVLAGFSASLSLPGIAGIVLTIGMAVDANVLIYERIREELDASKGLTSSIELGYDRA 570

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +S+I DS++T ++A  +L+ +G G ++GFA+T+ +    S+FT+I + + +  F++    
Sbjct: 571 FSSILDSHVTTMVAAFLLYTYGIGPIQGFALTLMIGTAASLFTSIVVTKEIFSFLMGKNL 630

Query: 520 MKSIDIN 526
           +      
Sbjct: 631 LSEKSFG 637



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 39/205 (19%), Positives = 85/205 (41%), Gaps = 4/205 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  K   +     I     VGP +  + IR G++ +  S +A+ +++ + 
Sbjct: 434 ESLEEAKDLEIVLKAGALPAPVRIIEERTVGPSLGADYIRAGMLSLSWSFLAVSVFMLLY 493

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +K    + A   LIL+I   L   A F    +L  +A ++  IG +V+  V++Y+R+R+ 
Sbjct: 494 YK-KAGIAADIALILNILIVLSVLAGFSASLSLPGIAGIVLTIGMAVDANVLIYERIREE 552

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +     S      I+   +      + + +   ++   +  +G   I  FA+ +  G   
Sbjct: 553 L---DASKGLTSSIELGYDRAFSSILDSHVTTMVAAFLLYTYGIGPIQGFALTLMIGTAA 609

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +  +SI +   I  F+      + +
Sbjct: 610 SLFTSIVVTKEIFSFLMGKNLLSEK 634



 Score = 81.7 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 95/260 (36%), Gaps = 47/260 (18%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-------------------MPK 41
           M+N  + ++L +++  + +    P +   S+  +  S                      K
Sbjct: 4   MKNKRFNLLLIALVTLVAVWSLWPTWSDYSLSRQLNSYRSAQDSLKYALSHREELENARK 63

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             + LGLDLRGG HLV+EVD+ D           +    +               ++ ++
Sbjct: 64  KSLKLGLDLRGGMHLVMEVDQIDLFEQKAWNKDAKFTEIMNSVRAKAAKSDASVLELIVA 123

Query: 102 FADSRFKENIA--DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
                          +    + + SKL                          ++    A
Sbjct: 124 EFKIENIRLSRYFYDIRNSDREIISKL--------------------------EKESDDA 157

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           + ++ EIIR RIDQ G++E  I   GS +I+I+LPG  D +R+R LL  TAK+ F  +  
Sbjct: 158 LSRAKEIIRNRIDQYGVAEPVITTQGSRKIIIELPGISDQNRVRNLLKGTAKLEFRLLRD 217

Query: 220 NNSKKGFMFGVRFLRDSDGN 239
                  +  +      +G 
Sbjct: 218 PEVLVRTLDRINTYLVQNGT 237


>gi|258620818|ref|ZP_05715853.1| Preprotein translocase subunit SecF [Vibrio mimicus VM573]
 gi|258587016|gb|EEW11730.1| Preprotein translocase subunit SecF [Vibrio mimicus VM573]
          Length = 300

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/279 (26%), Positives = 141/279 (50%), Gaps = 6/279 (2%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R+    ISIL  + S+      GLN G+DF GG+    + +  V    +   L+ +    
Sbjct: 13  RYITGMISILLMVISLAAFAIKGLNMGLDFTGGMVTEAVIDSSVSKVQLIDQLQPVLGES 72

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           ++      E  +++R       +         +   +  I     I +  +VG ++ +EL
Sbjct: 73  VTVTPSGEEGRWVIRYSLAAEGTAPVD-----MASTLHHISDHVQIVSNSMVGSQVGQEL 127

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           + +G + ++I  +++L Y+  RF+W  A GA+  L+ D+   LGFFA+  +EFNLT  AA
Sbjct: 128 VDQGGLALLICLLSILGYLSFRFEWRLASGALLALLHDVILVLGFFAITQMEFNLTVFAA 187

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           VL ++GYS+ND +++ DR+R+ +     +    D+ D+++  T  R++ TS    +++  
Sbjct: 188 VLAVLGYSLNDSIIIADRIRELLLAKQKT-PTADINDQAVIATFSRTMVTSGTTLMTISA 246

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           + + GG+ +  FAI M  G++    SSI I   +  ++ 
Sbjct: 247 LWLMGGAPLQGFAIAMFIGVISGTWSSISIGTVLPEWLG 285


>gi|86358415|ref|YP_470307.1| acriflavin resistance efflux transporter [Rhizobium etli CFN 42]
 gi|86282517|gb|ABC91580.1| probable acriflavin resistance (multidrug efflux transporter)
           protein [Rhizobium etli CFN 42]
          Length = 1051

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/634 (10%), Positives = 163/634 (25%), Gaps = 43/634 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++  +++   GL            +   P                      +  
Sbjct: 23  RRPILALVFNTLMVVAGLAA-----YVGVEVRELPDVDRPVVT---------VRTTFDGA 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  L    +   + +        +    Q+++TL F D+      A+ V   +  
Sbjct: 69  SPQTIDQELTKVIEGAVARVSGLKSISSTSSFGQSRVTLEFTDAIDLAVAANDVRDAIGR 128

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +V       +I+       ++     + +  +  + ID++   +   
Sbjct: 129 ITQNLPDEADAPQIVKADSDSSAIMRLAVTSTKLNMD--DLTQLVENEVIDRLASVDGVA 186

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D   L     T   ++                            
Sbjct: 187 DVEEYGDQEKVFRVDVDQGALASRGLTIGDLTKALDNAALDVPAGSLKSTTQDIVVRATA 246

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + S + L                          R        +           
Sbjct: 247 NLQTPADFSKVILQD------------------------RVRLGDVATVTLGPRDGDTAL 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +              L           +   +     G+   
Sbjct: 283 RSNGKPGIGLGIIRQAQSNTLNISTGIKAAVEQLSKTLPEGTTIAITSDDAVFIQGAIHE 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A+ A +V  V+++ +   +  L+   S+ + +I TLA + ++G ++ + ++  IV
Sbjct: 343 VVLALALAAVIVTAVIYLFLRDWRATLIPAVSMPVALIGTLAAIYMVGFSINILTLLAIV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  +  T     + L F  
Sbjct: 403 LATGLVVDDAIVVLENIVRRRAEGMGPRAAAVLGTREVFFAVIATTATLAAVFIPLSFLP 462

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F   +  S+ +S   A+++   +   ++    ++                 
Sbjct: 463 GQVGGLFREFGFVLAFSVGLSSIVALTLCPMLASRMLTKPMIEDHGALGRVGGAFANLYK 522

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      V I          L+    +   +  +    L ++       S +    
Sbjct: 523 WALHGCLNAPFVIILFSVMFAGAALIAFSTVKSELTPEEDRSLVMMRLTTPQGSSLEYTR 582

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           + +Q+ +   Q      +               +
Sbjct: 583 DKMQLVEEYLQPLVDSGDIRNVFSISGQGGSLNS 616



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 74/233 (31%), Gaps = 6/233 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L           N        +  Q Q       T +   V++    +   +TI  T  
Sbjct: 272 TLGPRDGDTALRSNGKPGIGLGIIRQAQSNTLNISTGIKAAVEQLSKTLPEGTTIAITSD 331

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +    +   + + I   +       W   L    ++ + +  TL    + G 
Sbjct: 332 DAVFIQGAIHEVVLALALAAVIVTAVIYLFLRDWRATLIPAVSMPVALIGTLAAIYMVGF 391

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             N+  + A++   G  V+D +VV + +   ++     +  R        E     + T+
Sbjct: 392 SINILTLLAIVLATGLVVDDAIVVLENI---VRRRAEGMGPRAAAVLGTREVFFAVIATT 448

Query: 777 MAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                  +P++   G V      F   +AF + +++  ++ +   +   +   
Sbjct: 449 ATLAAVFIPLSFLPGQVGGLFREFGFVLAFSVGLSSIVALTLCPMLASRMLTK 501



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
              + I + + +  +F+   +   I    + +      FAL   G   N+ +   ++ L+G
Sbjct: 864  GFAIIIIFLVLAAQFESVLS-SLIIMSTVPLGLACAVFALIITGSSLNIYSQIGLVLLVG 922

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ +      +L       R  I+K+    L   + T +A  +  +P+     
Sbjct: 923  VMAKNGILIVEFAN---QLRDRGEDVRSSIEKACALRLRPVMMTMIATILGGVPLVFAHG 979

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G     +    +  G+  A   ++FI     L +  +   +A
Sbjct: 980  AGAEARVALGWVIVGGLGFATLVTLFITPVAYLLLARFAKPHA 1022


>gi|116625993|ref|YP_828149.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229155|gb|ABJ87864.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1105

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 60/558 (10%), Positives = 148/558 (26%), Gaps = 38/558 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++        Q  +   P                          
Sbjct: 10  RPVATSLLMAAILLAGIVA-----YLQLPVSALPQVDYPTIQ---------VFTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     ++       S     + I L F  S   +    +V   +   
Sbjct: 56  PNVMATTVTAPLERQFGQIQGLSQMTSSSSGGCSVIVLQFNLSLDIDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  +     +        + VL+   I             +  +   ++        
Sbjct: 116 QSFLPSNLPVPPVYNKANPADAPVLT-LAITSGSMPLPLVHDLVDTRLAPKLSQINGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L         +       + +     F              
Sbjct: 175 VSISGGQKPAVRIQANPAALSSYGLNLEDLRTALTQTSVNGAKGNFDGPHQNYQINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +   ++                       +                 +   +        
Sbjct: 235 LLSSLD--------------------YHSVVVAYRNNAPVLLKDVAQVIDGVENNKLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   L                  A   S +  
Sbjct: 275 MNQTPAVILNIQRQPGANTISVVKEIKRLLPQLAGNLPASIRVTQLTDLTTAISASVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T A + +LG +L   S+  + +
Sbjct: 335 EFELMMTIALVVMVIFLFLRSLSATVIPSVAVPLSLVGTFAAMYVLGYSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +      +   G  +   TI    ++ +   + L F G 
Sbjct: 395 STGFVVDDAIVMIENISRYIEEGDPPMEAALKGAEQIGFTIVSLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++I+IS   ++++   M   I++++  +       +        IA
Sbjct: 455 VVGRLFREFAVTLAVTIIISAVVSLTLTPMMAARILKHRPPEQQGRFHAASERAFTKMIA 514

Query: 540 IQFMRARFWGVGISILFS 557
                 R       ++  
Sbjct: 515 FYGSTLRIVLRVQPLVLL 532



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 66/164 (40%), Gaps = 7/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+I++++R      +     + L +  T     + G   +  ++ A+    
Sbjct: 338 LMMTIALVVMVIFLFLR-SLSATVIPSVAVPLSLVGTFAAMYVLGYSLDNLSLMALTIST 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +         +   K   +     V  +++    ++P+   G
Sbjct: 397 GFVVDDAIVMIENI---SRYIEEGDPPMEAALKGAEQIGFTIVSLTVSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G +   FA+ +A  I+++A  S+ +   +   I   R    
Sbjct: 454 DVVGRLFREFAVTLAVTIIISAVVSLTLTPMMAARILKHRPPEQ 497



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 105/287 (36%), Gaps = 6/287 (2%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                        + +   + ++ G+   G     + ++     +V  S   +L+      
Sbjct: 803  LTAPVRYTPSSGVLIPPNNAIDTGVGASGTPAANITSSSNSANAVPLSAFTTLERVRSPL 862

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  +   V + +      A    +  V++   ++    ++Q          R  +  
Sbjct: 863  SINRQGQFPAVTISFNLAPDAALGSAISAVERVERDLKMPPSVQAEFQGTAAAFRNSLTN 922

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              + +I + + + I + + ++ +   +  ++TL       L     F  + N+ A+  ++
Sbjct: 923  QGLLIIAALVTVYIVLGVLYESFIHPITILSTLPSAGVGALLALMFFRQDLNVVAIIGII 982

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG    + +++ D   +  + +  + +  D I ++        + T+MAA ++ +P+A
Sbjct: 983  LLIGIVKKNGIMMVDFALEGQREHGKNAT--DAIYEACLLRFRPIIMTTMAALLAGIPLA 1040

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                +G  +     I M  G++++   +++    I +F   +     
Sbjct: 1041 FGKGFGSELRRPLGIAMIGGLLLSQVLTLYTTPVIYIFFDRFARPPR 1087


>gi|239917786|ref|YP_002957344.1| protein translocase subunit secF [Micrococcus luteus NCTC 2665]
 gi|281413721|ref|ZP_06245463.1| protein translocase subunit secF [Micrococcus luteus NCTC 2665]
 gi|239838993|gb|ACS30790.1| protein translocase subunit secF [Micrococcus luteus NCTC 2665]
          Length = 346

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 122/310 (39%), Gaps = 13/310 (4%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                               R R W    ++L  +         G N GI+F+GG +  V
Sbjct: 3   RFADWGNALYSGRISYPFIQRWRRWFALAALLLVLAGGLTALRGGFNLGIEFRGGSEFTV 62

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 D++     +  +     +           V+ +          +   +      
Sbjct: 63  SQTASTDVAAGERAVTDVLADGHATVTNVAPGTVRVQTEQLD-----DAQTRAVAANLQE 117

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                     +  VGP     + ++ ++G++I  + + +++ + F+ W  +L A+  ++ 
Sbjct: 118 AYGVGPDQVTSTFVGPTWGAAVSQQALIGLVIFVVLVALFMAVYFRTWKMSLAAVLGMLY 177

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM--KLYTTSISFRDL 760
            +  T G +   G E   +A+   LT++ Y++ D VVV+D++R+N          SF + 
Sbjct: 178 VVALTAGIYGATGFEITPSAIIGFLTILSYALYDTVVVFDKIRENTIGAGEDPERSFVEN 237

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFI 815
           ++ ++N+TL RS+ TS+   + V  +        G   +   A+ +  GI+V   S++F+
Sbjct: 238 VNLAVNQTLVRSITTSVVGILPVGSILFIGAGLLGAGTLRDIALALFVGIIVGTLSTLFL 297

Query: 816 AAPILLFIYD 825
            AP+   +  
Sbjct: 298 QAPLYALLRR 307


>gi|262376614|ref|ZP_06069842.1| multidrug resistance protein mexB [Acinetobacter lwoffii SH145]
 gi|262308324|gb|EEY89459.1| multidrug resistance protein mexB [Acinetobacter lwoffii SH145]
          Length = 505

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/522 (12%), Positives = 149/522 (28%), Gaps = 32/522 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G+       L +  ++  P+               G         
Sbjct: 9   RPKFATVIAIIMMVLGIFA-----LQKIPIEHMPNMDAPAL---------GVSAGYRGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++    ++       +    +  + LSF      +    +V   + GV
Sbjct: 55  AETVEQSVTQILEQAIKGIEGLESFQSNSSVGRANLALSFEQGVDLDQALLQVQNAVNGV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L  + ++N +    +      L     +   +   E +  ++     +    +   +
Sbjct: 115 LSRLPEETQQNGVAVYKQGYDQFALLSLYDESGKATPTELADYLMVHVEPRFSRIDGMGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +P +LRQ     + +       N        G             
Sbjct: 175 VELYGAG-YAMRIWLNPHKLRQFNLMPSDIRNAVETQNAPLVSGSIGGLPTTQDQYMNAK 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +S I              +    I          +      +            
Sbjct: 234 VSAGSRLSSID-------------EFEEIIVKTTDSGSVLYLKDVARVELGAESYNHLNY 280

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
               +          + +     E    +    +A         +          S    
Sbjct: 281 TNGHLSAALSIQLAPRSNAIAVSEQMQTVLKNAQANLPAHYQLRMTMDRTPFITSSIEQV 340

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV++V+F+ +   +  ++   +I + V+ T A+L +LG +L   ++  ++L
Sbjct: 341 AKTLVEAMVLVVLVMFIFLQNWRATIIPAVTIPIVVLATFAVLYVLGMSLNSFTLFALIL 400

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLD----MGFSRAYSTIFDSNITALIATVVLF 478
            IGL VD  I+V E I     +      +         S A   I        I      
Sbjct: 401 AIGLLVDDAIVVVENIERLMHEEHLDAQAAALKSMKEISGALIGITLVLTAVFIPMAFFG 460

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              G     F+IT+ +++L+S+  A+ I       +++ +  
Sbjct: 461 SMTGVIYCQFSITLVVAMLLSLLVALIITPTFAAQLLKRQPH 502



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 91/255 (35%), Gaps = 6/255 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              +   + L  V       +  +            L        +++A +  ++ V K 
Sbjct: 253 TTDSGSVLYLKDVARVELGAESYNHLNYTNGHLSAALSIQLAPRSNAIAVSEQMQTVLKN 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
               +P        +         I +    ++ + + +++ ++I  + W   +    T+
Sbjct: 313 AQANLPAHYQLRMTMDRTPFITSSIEQVAKTLVEAMVLVVLVMFIFLQNWRATIIPAVTI 372

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T     + G+  N   + A++  IG  V+D +VV + +     ++   +  +  
Sbjct: 373 PIVVLATFAVLYVLGMSLNSFTLFALILAIGLLVDDAIVVVENI--ERLMHEEHLDAQAA 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG--GSVIG-SFAIPMAFGIVVAASSSIFIAA 817
             KS+ E  G  +  ++      +PMA +G    VI   F+I +   ++++   ++ I  
Sbjct: 431 ALKSMKEISGALIGITLVLTAVFIPMAFFGSMTGVIYCQFSITLVVAMLLSLLVALIITP 490

Query: 818 PILLFIYDWRAKNAR 832
                +   +    +
Sbjct: 491 TFAAQLLKRQPHQPK 505


>gi|284037829|ref|YP_003387759.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Spirosoma
           linguale DSM 74]
 gi|283817122|gb|ADB38960.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Spirosoma linguale DSM 74]
          Length = 1067

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/668 (12%), Positives = 190/668 (28%), Gaps = 42/668 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  MI  IG+L           + +FP   P               +     
Sbjct: 7   RRPVFAIVISIMIVFIGVLAI-----KSLPISQFPDIAPTTV---------NIFIAYPGS 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             D     ++     L   +        I   +    +  + + F           +V  
Sbjct: 53  SADV---LVKSTLITLEQAINGVQDMRYIATDATSAGEATLRIIFEPGTDPNTAVIRVKT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V   L    ++  ++ +  +   ++       +              + I +I  +
Sbjct: 110 RVDQVMPLLPELVQREGVIISPVQPSMLMYVNLFSKEKSIDEKFLFNYATVKMIPEIQRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    +P R+R    +T ++       +   +    G      + 
Sbjct: 170 KGVARAQILGSRRYAMRVWLNPERMRAYNISTEEVMKAIGEQSIIGRPGRIGQSSGIAAQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +Y++  K                 K  +    I                 +       
Sbjct: 230 SLEYVLTYKGR-------------YNKPEEYEGIIVRANASGESIHLKDIARVELGSEFF 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        +       + +  I        +++A   P     +          
Sbjct: 277 DIYSNLDGHASAAIVLRQNYGSNASDVINEVKEKLEVMKASFPPGVDYKISYDVSNFLDA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ +++I    ++   G ++ L ++
Sbjct: 337 SIEQVIHTLRDAFILVALVVFLFLGDWRSTLIPILAVPVSLIGAFFVIQAFGLSINLITL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E +  +     + + F ++          I    +  +   +
Sbjct: 397 FALVLAIGIVVDDAIVVVEAVHAKMEEEPHLTPFRAVQKVLGEISGAIIAITLVMVSVFL 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G      R F+ITM  SI+IS   A+++   +   +++         NPL+R  
Sbjct: 457 PISFMSGPVGTFYRQFSITMASSIVISALIALTLTPVLCAMLLKNHHGHPPKKNPLTRAL 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
              D     F +   W VG+  L                         L        D S
Sbjct: 517 ---DSFNRGFDKMTGWYVGLLKLIVSRRFVTFAILIGFCAGIVVVNKILPAGFIPNEDQS 573

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            + + +++     +   N    +   +  +    +SV+     E++ +          I 
Sbjct: 574 TIYAIIQTPPGSTLEKTNEVSRRLQKICEEVPGIESVSSLAGYEIMTEGRGSNAGTCLIN 633

Query: 653 NTEIVGPK 660
                   
Sbjct: 634 LKTWSDRD 641



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 77/245 (31%), Gaps = 12/245 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A   V  S      +     +I+  N                 + A   + E+  K + 
Sbjct: 793  DAGEMVPYSAFMHLKKGQGPNEITRFNLYNSAAIQGLPAKGYTTADAIQAIREVAAKTLP 852

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
            +   ++    +     + +       +   +I    +   +  +++ +   L  + +L +
Sbjct: 853  KGYDIAFEGLSYDESIRGNE-----ALYVFLIVLAFVYFVLAAQYESFIIPLAVVFSLPV 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +  +     + G+E N+ A   ++ LIG    + V++ +     ++      +  +   
Sbjct: 908  GVFGSFLVLKMMGLENNIYAQIGLIMLIGLLGKNAVLIVEFA---VQKRQQGETILNAAI 964

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPI 819
            +         + TS A    ++P+ +  G   I   +       G++      + I   +
Sbjct: 965  EGARVRFRPILMTSFAFVAGLIPLIIATGAGAIGNRTIGASALGGMLFGTIFGVIIIPGL 1024

Query: 820  LLFIY 824
                 
Sbjct: 1025 YYIFG 1029



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 92/279 (32%), Gaps = 14/279 (5%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                              +    + V AN   +   ++         +      + + +
Sbjct: 226 IAAQSLEYVLTYKGRYNKPEEYEGIIVRANASGESIHLKDIARVELGSEFFDIYSNLDGH 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGV 673
               +  +       + V+  VK+K+  +           +   +S  L   I + I  +
Sbjct: 286 ASAAIVLRQNYGSNASDVINEVKEKLEVMKASFPPGVDYKISYDVSNFLDASIEQVIHTL 345

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + I + + +++    W   L  I  + + +         FG+  NL  + A++  IG 
Sbjct: 346 RDAFILVALVVFLFLGDWRSTLIPILAVPVSLIGAFFVIQAFGLSINLITLFALVLAIGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA--VWG 790
            V+D +VV + +   M+       FR  + K + E  G  +       + V       + 
Sbjct: 406 VVDDAIVVVEAVHAKMEEEPHLTPFR-AVQKVLGEISGAII---AITLVMVSVFLPISFM 461

Query: 791 GSVI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              +      F+I MA  IV++A  ++ +   +   +  
Sbjct: 462 SGPVGTFYRQFSITMASSIVISALIALTLTPVLCAMLLK 500


>gi|332880523|ref|ZP_08448197.1| RND transporter, HAE1 family [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332681511|gb|EGJ54434.1| RND transporter, HAE1 family [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 1489

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 69/635 (10%), Positives = 170/635 (26%), Gaps = 44/635 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPIDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQELNGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMESSSSNSGGFSATITFDISADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQAPSQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++      D      I  S       +D +       +          +     P +L  
Sbjct: 138 LMTLCLTSDDPKFDEIYLSNFATINVLDVLRRIPGVGRVSNIGSRYYAMQIWVQPDKLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T   +       N      + G + +   D    +       +              
Sbjct: 198 FGLTVQDVQNALKDQNRESAAGVLGQQPIEGLDITIPISTKGRLST-------------- 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +   +             I            +                +    
Sbjct: 244 VSQFEEIVLRADADGSLIRLRDVARISLEAQSYNTESGINGGNAAVLGIYMLPGANAMEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E        +           +          S      T      LV+ V+F+ +   
Sbjct: 304 AENVKKAMDEISKNFPEGLKYEIPFDMTTYISESIHEVYKTLFEALVLVIFVVFLSLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +     +
Sbjct: 364 RATLIPVVAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGIVVDDAIVVVENVERIMEE 423

Query: 445 NQ-SVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFFG--GGAVRGFAITMGLSILISM 500
                + +     +  A + I  S + A +   V F  G  G   R F +T+ +S+LIS 
Sbjct: 424 EHLGAYEATKKAMTGLAGALIATSLVLAAVFVPVSFLPGITGQLYRQFTVTIVVSVLIST 483

Query: 501 FTAISIVRAMMIFI--------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
             A+++   M   I         +    + I+             I    +  +   +  
Sbjct: 484 VVALTLSPVMCSLILKPTDSNKPKNIVFRKINEWLSVGNHKYIQGIQKVLIHPKRIILSF 543

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            ++  +  I           ++ +G  ++ +       L   R+  +      +     +
Sbjct: 544 CLVVGLIFILHRMVPTSFLPVEDQGYFKVELELPEGATLERTRNVTKRAIRYLMENPAVE 603

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +N                  + +   +  +   
Sbjct: 604 YVQNVTGSSPRVGTSQARSELTVILKPWEERDKTT 638



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/421 (9%), Positives = 139/421 (33%), Gaps = 23/421 (5%)

Query: 430  SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
            ++   +E         +    ++D   +   +   +     +  +      G G+  GF 
Sbjct: 617  TSQARSELTVILKPWEERDKTTIDEVMAEVKAHFKEYPECKVYLSTPPVIPGLGSSGGFE 676

Query: 490  ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
            + +      +    +     ++ +  + K++  +  +  +    +   +    ++     
Sbjct: 677  MQLEARGDATFENLVQATDTLLYYAAQRKELSGLSSSLQAEIPQLYFDVDRDKVKLSGVP 736

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
            +             ++ +  N   +    + +   A+       +           +   
Sbjct: 737  MADVFSTMKAYTGSVYVNDFNM-FNRIYRVYIQAEADYREHPENINLFFVRGSNNAMIPL 795

Query: 610  NFDGEKNFLV--------------RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               G  ++                 ++    D  +  + +E++++   E +P +      
Sbjct: 796  TSLGTTSYTTGPGSIKRFNMFNSAIIRGAAADGYSSGQAMEVIEQVAREHLPDNIGVEWS 855

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
             +  +  +   + G+V +++  I + +++   ++ W   +  + +L +          L 
Sbjct: 856  GLSYQEKQAGGQTGLV-LMLVFIFVFLFLAALYESWMVPIAVLLSLPVAALGAYLGITLC 914

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+E ++     ++ L+G +  + +++ +  +  +               +        + 
Sbjct: 915  GLENDIYFQIGLVMLVGLAAKNAILIVEFAKDEV---DRGGDLVTSTLHAARLRFRPILM 971

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS+A  + +LPM V    G +   +    + FG++VA S  I +     + IY  + K  
Sbjct: 972  TSLAFILGMLPMVVASGPGSASRQAIGTGVFFGMIVAVSVGILLVPFFFVLIYKAKGKFN 1031

Query: 832  R 832
            R
Sbjct: 1032 R 1032



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 89/277 (32%), Gaps = 16/277 (5%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  +               ++ + A+    L  +R                     
Sbjct: 226 IEGLDITIPISTKGRLSTVSQFEEIVLRADADGSLIRLRDVARISLEAQSYNTESGINGG 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGV 673
               L            V E VKK + EI           +   ++  +          +
Sbjct: 286 NAAVLGIYMLPGANAMEVAENVKKAMDEISKNFPEGLKYEIPFDMTTYISESIHEVYKTL 345

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + + ++  +++    W   L  +  + + +  T GF  +FG   N+  +  ++  IG 
Sbjct: 346 FEALVLVIFVVFLSLQSWRATLIPVVAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGI 405

Query: 733 SVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            V+D +VV    +R+ +   L        +   K++    G  + TS+      +P++  
Sbjct: 406 VVDDAIVVVENVERIMEEEHLGA-----YEATKKAMTGLAGALIATSLVLAAVFVPVSFL 460

Query: 790 G---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               G +   F + +   ++++   ++   +P++  +
Sbjct: 461 PGITGQLYRQFTVTIVVSVLISTVVAL-TLSPVMCSL 496


>gi|330830623|ref|YP_004393575.1| multidrug resistance protein [Aeromonas veronii B565]
 gi|328805759|gb|AEB50958.1| Multidrug resistance protein [Aeromonas veronii B565]
          Length = 1038

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/660 (11%), Positives = 189/660 (28%), Gaps = 43/660 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L +++   GL+      + +    + PS                     E  
Sbjct: 9   RRPLVAVVLSALLTVFGLVAFSKLTVREMPDVQIPSVSITT--------------TYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +          R+ ++ IT+ F            V   L  
Sbjct: 55  APSVMESQVTKPIEDQLSGISGIKNINSMTRKGRSMITVEFKLGWNMVEGISDVRDALSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D  + L+   +      +    +  Q+   A+  +    R  +D + + +   
Sbjct: 115 ARPRLPDDVDEPLVTKDSGNGDVAIWLNFSSSQMDRTAM--TDYANRVLVDPLSLVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S  +   +     P+ +     T + +       N    G                
Sbjct: 173 EVALSGDLTQVMYVRLRPADMAARGITVSDVEEALKRENIELPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +  + + +    A                    +  +     ++           
Sbjct: 219 -----IRNNSMTMAVQIARLYHTAEDFQQLQVTTAANGQSVYLADIADVEVGAKNEDSAY 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     +        ++          V+  +      +   
Sbjct: 274 QRNGKESLGIGIVAQSTANPLAVAQGIEKKLGEMQRFLPEGAKLEVDYDSTIFIKQAIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI A LV+ VL++ +  G+  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYETLAICAVLVVAVLYLFLGQGRTTLIPAITVPVSLISAFIGAWYFGFSINLITLLALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I    ++ +    +   G       +  +    ++  V + F  
Sbjct: 394 LAIGLVVDDAIVVVENIHHHLQRGEPPLLAAWHGTREVGFAVIATTAVLVMVFVPIAFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-----IDINPLSRFFL 533
           G        FAI + L++L S   A+++  AM  +++R     +     +D         
Sbjct: 454 GMVGRLFTEFAILLSLAVLCSSLVALTLTPAMGSWLMRPLDKPNRLTAGLDRGLGWLEGH 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +A    R+R+  + + +                   + +G I + V       +  
Sbjct: 514 YRHLLAWVLRRSRWTPLVLLLCLGGIGALFAQLPTSLTPTEDRGVIYVFVKGAEGTSIER 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           ++ N++ ++   +        +                  V+  +       V  +    
Sbjct: 574 MKRNMQQVESAIMPMLGKGVVQALSFSTPAFGRGGDQTGMVIIQLTDWAERDVTATEFSR 633



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 44/112 (39%), Gaps = 6/112 (5%)

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            E ++ +   ++ LIG    + +++ + +    +L      F + I       L   + TS
Sbjct: 901  EMSIYSQIGMIMLIGMVTKNGILIVEFIN---QLRQRGEGFEEAIIAGSVRRLRPILMTS 957

Query: 777  MAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + A I  +P+ +  G       +    + FG+ +A   ++ +   I   I  
Sbjct: 958  LTAIIGAVPLMLSMGAGYESRMAVGTVVFFGLSLATLVTLLVVPAIYHLIAR 1009



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 94/279 (33%), Gaps = 7/279 (2%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            ++ +      +   DF+          + V L+ +       +  D ++Q    E   +
Sbjct: 224 MTMAVQIARLYHTAEDFQQLQVTTAANGQSVYLADIADVEVGAKNEDSAYQRNGKESLGI 283

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII-SA 677
             +     + +A  + +E    ++   +P       +       ++ I +    + I + 
Sbjct: 284 GIVAQSTANPLAVAQGIEKKLGEMQRFLPEGAKLEVDYDSTIFIKQAIDEVYETLAICAV 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + + +      +    L    T+ + +         FG   NL  + A++  IG  V+D 
Sbjct: 344 LVVAVLYLFLGQGRTTLIPAITVPVSLISAFIGAWYFGFSINLITLLALILAIGLVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
           +VV + +                      E     + T+    +  +P+A   G V    
Sbjct: 404 IVVVENIH---HHLQRGEPPLLAAWHGTREVGFAVIATTAVLVMVFVPIAFMDGMVGRLF 460

Query: 796 -SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI ++  ++ ++  ++ +   +  ++     K  R+
Sbjct: 461 TEFAILLSLAVLCSSLVALTLTPAMGSWLMRPLDKPNRL 499


>gi|255325093|ref|ZP_05366199.1| protein-export membrane protein SecD [Corynebacterium
           tuberculostearicum SK141]
 gi|255297658|gb|EET76969.1| protein-export membrane protein SecD [Corynebacterium
           tuberculostearicum SK141]
          Length = 638

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 113/580 (19%), Positives = 221/580 (38%), Gaps = 65/580 (11%)

Query: 1   MRNNP--W-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           M+N+   W    +   +  + ++ AL            P         LG+DL+GG+ + 
Sbjct: 9   MKNSKRQWPKRAIALFVLIVVVIYAL--IFLTGSRQSTP--------KLGIDLQGGTRVT 58

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR--FKENIADKV 115
           L    ++     L+   + L   +   G+    +    N + ++         + +    
Sbjct: 59  LAPQGEEPTQDQLKQARNILEQRVNGMGVSGSEVVINGNTLVITVPGEDASQAQAVGQTS 118

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
            LF + V      D +K L     +     V          +  +EQ  + I Q+  Q+ 
Sbjct: 119 QLFFRPVAKPSMPDMEK-LNKELEDMANRWVKYDVLSADEANKQMEQMTQAIAQQEAQMT 177

Query: 176 ISESTIQR----------LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK--------- 216
             E   Q+            S+ I      ++    L +   +    +            
Sbjct: 178 GKEPKKQKAPKVSAKPLEEPSNSIEQTKRRDEVTEMLLKDRQSEDPTTQAAASALMTCQG 237

Query: 217 -VLPNNSKKGFMFGVRFLRDSDGNQYLV-----------EDKVEISGIHLNGATA----- 259
              P                S+GN Y++           E+   ++G  ++  +      
Sbjct: 238 STDPLAGADDPAKPFVTCDYSNGNPYVLEPAPLLNGIKDENGTRLTGNEIDTNSPIEGGL 297

Query: 260 --NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGK 316
                               G++ + ++T++++   +A+ LD  V++APVI  A      
Sbjct: 298 NGQSGQMEINFSFKTGDGPNGSQTWADLTQEHLKDQVAITLDSGVISAPVIQGATPVGSA 357

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKL------NIVEERNVGADLGSDSIYKGTCAIVA 370
             I+G+F+ E A  LA  L+ G+LP+              ++   LG  ++  G  A + 
Sbjct: 358 TSITGDFSQEEAQNLANNLKYGALPLSFAGENGEPGGTVESIPPTLGKAALQAGLIAGLV 417

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGL 426
           GLVL++ + +  +     V+   +  + +LT   L LL    G +L L  +AG+V+G+G 
Sbjct: 418 GLVLVMAYSLYYFRALAGVSLIFLIASGVLTYGSLVLLGRWIGYSLDLSGVAGLVIGVGA 477

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
             DS ++  ERI++E  + ++   +    + RA +TI   N   LI +VV++F   G V+
Sbjct: 478 TADSFVVYYERIKDELLEGRTFRSATQKAWERARATIVTGNAVTLIGSVVVYFLAIGEVK 537

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           GFA TMGL+ +  +  +  ++  +M  + R        +N
Sbjct: 538 GFAFTMGLTTVFDLVVSFLVMAPLMQMVGRRPAAAKPSMN 577



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 78/267 (29%), Gaps = 8/267 (2%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +                  +      D   +  +   +    I      G    +     
Sbjct: 306 INFSFKTGDGPNGSQTWADLTQEHLKDQVAITLDSGVISAPVIQGATPVGSATSITGDFS 365

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
           Q         +                    E + P + +  ++ G++  ++  + ++ Y
Sbjct: 366 QEEAQNLANNLKYGALPLSFAGENGEPGGTVESIPPTLGKAALQAGLIAGLVGLVLVMAY 425

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAVAAVLTLIGYSVNDKVV 739
               F+    +  I  LI     T G   L     G   +L+ VA ++  +G + +  VV
Sbjct: 426 SLYYFRALAGVSLIF-LIASGVLTYGSLVLLGRWIGYSLDLSGVAGLVIGVGATADSFVV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
            Y+R++  +       +FR    K+        V  +    I  + +       +  FA 
Sbjct: 485 YYERIKDELLE---GRTFRSATQKAWERARATIVTGNAVTLIGSVVVYFLAIGEVKGFAF 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDW 826
            M    V     S  + AP++  +   
Sbjct: 542 TMGLTTVFDLVVSFLVMAPLMQMVGRR 568


>gi|300778292|ref|ZP_07088150.1| HAE1 efflux family protein [Chryseobacterium gleum ATCC 35910]
 gi|300503802|gb|EFK34942.1| HAE1 efflux family protein [Chryseobacterium gleum ATCC 35910]
          Length = 1048

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/670 (10%), Positives = 170/670 (25%), Gaps = 47/670 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G+L  +        + ++P   P                      
Sbjct: 8   RPVLSTVISILIVILGVLGLI-----SLPVTQYPDIAPPTV---------SVSTNYTGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   + +  +E  + ++       +     + +I + F      +  A  V   +  
Sbjct: 54  AETVMKSVVVPLEEQINGVEGMDYITSTAGNDGSAQIQVFFKQGIDPDIAAVNVQNRVAR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  ++ +VT  ++  +++      +      +     +    I  +       
Sbjct: 114 ATPLLPAEVTRSGVVTQKQQTSALMYMSFYSENKDLDDVYLQNFLNINIIPNLKRVNGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+++     T   ++      +        G       +    
Sbjct: 174 DANVFGGKNYSMRIWLDPAKMAAYSVTPTDVTNAINEQSREAAAGSIGQNSGSSFEYIIK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                       +    I       +         +           
Sbjct: 234 YVGK----------------FNDKEQYDNIIIKSLANGQNLMLKDVAKVELAGQSYTGIG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    I+                               S   
Sbjct: 278 ENGNNPSISMGIFQTPGSNAQEIIKNIKAYLKSAEGTFPQGIKYTFNFDTNEFLEASIDK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+++ +   +  L+   ++ ++++     L+L G +L L ++  +V
Sbjct: 338 VVHTLIEAFILVFIVVYIFLQDFRSTLIPAIAVPVSIVGAFFFLNLFGYSLNLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSV-FCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +  +     S    +           I    +      + + F 
Sbjct: 398 LAIGIVVDDAIVVVEAVHAKMEHGISDAKKATVEAMDEITGAIISITLVMAAVFIPVTFI 457

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      + F IT+ ++I+IS   A+++   +    ++  +    +   L+        
Sbjct: 458 TGPTGVFYQQFGITLIIAIIISAINALTLSPVLCSLFLKPHEAHHAEYKNLNLLQKFFYK 517

Query: 538 IAIQFMRA------------RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             I F               R   V + I      I    +  +  G        +    
Sbjct: 518 FNIAFKTTTERYGRGFVFLLRHKWVTLIIFAVTGGILFWASSSMKKGFVPTEDRGIIFTD 577

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +    + +     +L+          G +N  +               L  VK K  E 
Sbjct: 578 VQLPPGASMERTYNALKTLQAKALKVPGVQNVTISTGRGFLSGNGSNNGLAFVKLKPFEE 637

Query: 646 VPLSTIQNTE 655
                  + +
Sbjct: 638 RKKDGQTSED 647



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 75/251 (29%), Gaps = 15/251 (5%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            S + S +        ++      +  L       G +       + +             
Sbjct: 795  SGIMSPISQFVTLTKAYGPQSVSRYNLFTSVKVTGANSDGYSSGDAIAAVQQVADETLNQ 854

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTL 708
                        EL       +I     + +Y  +      +   L  I +L L +    
Sbjct: 855  NYAVEFTGLTREELNSGSQTLLIFGLSLIFVYFILSAQYESYILPLIVIISLPLGVMGAY 914

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                + G+E N+    A++ L+G    + +++ +                 ++  +IN  
Sbjct: 915  FGQKIMGLENNIYFQIALIMLVGLLAKNAILIVE------FAVQRRHHGETIVMSAINAA 968

Query: 769  LGR---SVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLF 822
              R    + TS A    +LP+    G   +   S A   A G+++     +F+   + + 
Sbjct: 969  KARVRPILMTSFAFIFGLLPLVLASGIGAVGNRSIATGAAIGLLIGTVLGLFVIPVLYVI 1028

Query: 823  IYDWRAKNARI 833
                + K   I
Sbjct: 1029 FETLQEKIKPI 1039



 Score = 43.9 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 79/229 (34%), Gaps = 5/229 (2%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
               + +    N    +   I   +   + + L  V     + Q      +N +     +
Sbjct: 228 FEYIIKYVGKFNDKEQYDNIIIKSLANGQNLMLKDVAKVELAGQSYTGIGENGNNPSISM 287

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              Q    ++    + ++   K      P            +     I K +  +I + I
Sbjct: 288 GIFQTPGSNAQEIIKNIKAYLKSAEGTFPQGIKYTFNFDTNEFLEASIDKVVHTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I    +   L     + + I     F  LFG   NL  + A++  IG  V+D 
Sbjct: 348 LVFIVVYIFLQDFRSTLIPAIAVPVSIVGAFFFLNLFGYSLNLLTLFALVLAIGIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +VV + +   M+   +    +    ++++E  G  +  S+   ++ + +
Sbjct: 408 IVVVEAVHAKMEHGIS--DAKKATVEAMDEITGAII--SITLVMAAVFI 452


>gi|121609306|ref|YP_997113.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
 gi|121553946|gb|ABM58095.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
          Length = 1070

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 56/536 (10%), Positives = 149/536 (27%), Gaps = 50/536 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N  +  ++   I  +GL         +  +D+FP+      +           +    
Sbjct: 8   LKNPVFATMVMLAIVVLGLFS-----YQRLKIDQFPNIEFPVVV---------VTVSYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + +           +    + + F         A+ V   + 
Sbjct: 54  AAPEIVESEVTKKIEESVNSIAGIDALTSRSYEGMAVVIIEFQLHVDGTKAAEDVRERVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQN-------------NIDQVISHAIEQSMEII 167
            V   L  + K+  +        ++                    D     A+E +    
Sbjct: 114 MVRPALRAEVKEPRVQRFDPASRAVWYLAVLPEEQADGSVARHAADGNRRSAVELTTWAE 173

Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
           +    ++                 ++    +P  L     T  ++       N +     
Sbjct: 174 QVLKKRLENVRGVGAVHLVGPTRREINIYLNPQALEAFAITPEQVVEAVRNENQNLPVGA 233

Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                   +      ++   +                       I               
Sbjct: 234 IRSLTQDRAVQIDARMQRPEDFG--------------------QIIVARRNGAPVRLSQV 273

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
             +      +    +                 +    ++      A LR    P      
Sbjct: 274 ARVHDGAQELESLALYNDQRTLLLAVQKSQGENTIEVVDGLHAAVAELRQQLPPGVRLQT 333

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
              +      + +  + T    A L ++++F+ +   +  ++   ++ + +I T   ++L
Sbjct: 334 IGDSARPIRVAVNNVRQTLIEGALLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLCMNL 393

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            G T+ + ++  + L +GL +D  I+V E I    +  +  + +   G       +  + 
Sbjct: 394 FGFTINMITLMALSLCVGLLIDDAIVVRENIVRHVQMGKRAYDAALDGTQEIGLAVLATT 453

Query: 468 ITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           ++ +   + + F G   G     F IT+  ++LISMF + ++   +          
Sbjct: 454 LSIVAVFLPIGFMGGIIGKFFHEFGITIVAAVLISMFVSFTLDPMLSSVWHDPSIH 509



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + +LI       W   +    TL + +  T     LFG   N+  + A+   +G 
Sbjct: 353 IEGALLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLCMNLFGFTINMITLMALSLCVGL 412

Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+  +        D       E     + T+++     LP+   GG
Sbjct: 413 LIDDAIVV----RENIVRHVQMGKRAYDAALDGTQEIGLAVLATTLSIVAVFLPIGFMGG 468

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      F I +   ++++   S  +   +    +D
Sbjct: 469 IIGKFFHEFGITIVAAVLISMFVSFTLDPMLSSVWHD 505



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 76/220 (34%), Gaps = 11/220 (5%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                      A   V   ++K +  +V     +       K   E        +I++ I 
Sbjct: 834  VAVNANVTQRAAGDVSADIRKVLDGMVFPPGYRYQFGGSTKNMAEAFGYASSALILAIIF 893

Query: 680  MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + +  +F  +   L  +T+L L +   +     F    ++ +V  V+ L+G    + +
Sbjct: 894  IYMILASQFKSFVQPLALMTSLPLTLIGVVLALLTFRSTLSMFSVIGVVMLMGLVTKNAI 953

Query: 739  VVYD---RMRKNM----KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
            ++ D   R R+            +   + +  +    L   + T++A    ++P+A    
Sbjct: 954  LLVDFAIRARQEHVDDQGRSVPGLPRAEALLLAARVRLRPILMTTLAMIFGMMPLAFALS 1013

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             G          +  G++ ++  ++ +      ++ D   
Sbjct: 1014 EGSEQRAPMGQAVIGGVLTSSLLTLVVVPVAYCYMDDLAR 1053


>gi|189425433|ref|YP_001952610.1| acriflavin resistance protein [Geobacter lovleyi SZ]
 gi|189421692|gb|ACD96090.1| acriflavin resistance protein [Geobacter lovleyi SZ]
          Length = 1034

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/518 (13%), Positives = 151/518 (29%), Gaps = 38/518 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      ++   +   GLL           ++  P+                  +   L 
Sbjct: 9   RRPIATSLVMLAVLVFGLLA-----YRGLPVNDLPTVDFPT-----------IQVTSNLP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + +   +    +   S +        +  Q  + ITL F   R  +  A  V   +
Sbjct: 53  GASPETMASAVATPLEREFSTIAGLDSMTSTNGQGISIITLKFTLKRNIDAAALDVQAAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                KL  D              S VL    ++       + +         +I +   
Sbjct: 113 AKAMRKLPADMTTPPSYRKVNPADSPVLY-LALNSESMPLHQVNEYADTMLAQRISMVSG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q L           + DP +L        +++      N++    +   +    +   
Sbjct: 172 VAQVLVYGSQKYAARVQVDPRQLAARGIGIDEVASALARANSNLPTGVLQGKQQALTIQT 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                         ++          +    T D++         
Sbjct: 232 NAPLLKA----------------EAFRPTIIAWKNGSPVRVQDVGTTLDSVENDKVAAWY 275

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            R   A          +   +    ++    L    +          V      +   S 
Sbjct: 276 NRREFATRAIVLAVQRQPGANTIEMVDAIKQLLPEFQNQLPAALQMNVLYDRTVSIRESV 335

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K T  +   LV++V+F+ +      L+   ++ L+++ T A++S LG ++   S+  
Sbjct: 336 DEVKFTLVLTICLVIMVIFLFLRNLPATLIPSLAVPLSIVGTFAVMSGLGISINNISLLA 395

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G  VD  I++ E I     +      +   G      TI    I+ +   + + F
Sbjct: 396 LTLSVGFVVDDAIVMLENIVRHIEEGMKPMEAALRGSREIGFTIVSMTISLVAVFIPVLF 455

Query: 480 FGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI 514
            GG   R    FA+T+  +ILIS F ++++   +    
Sbjct: 456 MGGMLGRLLNEFAVTISAAILISGFVSLTLTPMLCSRF 493



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 73/204 (35%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V+ Q           + +++ +   ++     +         I   +       V+   +
Sbjct: 289 VQRQPGANTIEMVDAIKQLLPEFQNQLPAALQMNVLYDRTVSIRESVDEVKFTLVLTICL 348

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++           L     + L I  T    +  GI  N  ++ A+   +G+ V+D +
Sbjct: 349 VIMVIFLFLRNLPATLIPSLAVPLSIVGTFAVMSGLGISINNISLLALTLSVGFVVDDAI 408

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIG 795
           V+ + +   ++     +   +   +   E     V  +++     +P+   GG    ++ 
Sbjct: 409 VMLENI---VRHIEEGMKPMEAALRGSREIGFTIVSMTISLVAVFIPVLFMGGMLGRLLN 465

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ ++  I+++   S+ +   +
Sbjct: 466 EFAVTISAAILISGFVSLTLTPML 489



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 87/278 (31%), Gaps = 10/278 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               + L             G + +     + V LS + +   S+    ++          
Sbjct: 755  QYQVILEVEPQYQKDQAALGLLHVRSTIGQLVPLSTLLTAQRSVGPLTVNHLGQSAAVTV 814

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
               ++       A   V +  K   T I                    +    V VI   
Sbjct: 815  SFNIRPGVPLGEATAAVEKEAKALPTGITTAFQGTAQAFKQSFSGLSWLLIAAVAVIYIV 874

Query: 678  IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + +L        +   +  ++ L       L    LFG E NL A   ++ L+G    + 
Sbjct: 875  LGVL-----YESYIHPVTILSGLPSAGLGALLTLLLFGHELNLYAFVGIILLVGIVKKNA 929

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D         T  I+    I +         + T+MAA    LP+A+    G    
Sbjct: 930  IMMIDFALD--AQRTEGITPERAIYQGCLIRFRPIMMTTMAALTGALPIALGIGAGADAR 987

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                + +  G++V+   +++I   + +++   +    R
Sbjct: 988  RPLGLAVVGGLLVSQILTLYITPVVYIYLDRLQQHIRR 1025


>gi|325107517|ref|YP_004268585.1| acriflavin resistance protein [Planctomyces brasiliensis DSM 5305]
 gi|324967785|gb|ADY58563.1| acriflavin resistance protein [Planctomyces brasiliensis DSM 5305]
          Length = 1075

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 82/673 (12%), Positives = 197/673 (29%), Gaps = 55/673 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      + ++ +   GL+           +  +P                   +  E  
Sbjct: 9   RRPVLTTMAFAALVVFGLVA-----YVSLGMALYPDVDMPMVT---------VTVQYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  S +           +   ++ L F   R  +  A  V   + G
Sbjct: 55  SPQTVETEVTEILEESLSTISGIKSMRSETSEGVVQVFLEFELKRDVDVAAQDVRDKIAG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  D +  ++         I+      +  I      + ++++ RI+ I       
Sbjct: 115 IRGQLPSDSEAPVVEKFDPDSAPILGIVLAGNASIRDLTVFADDVVKPRIESINGVGGVQ 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 R +       D   L     +   +       N    G                
Sbjct: 175 LTGDREREIRVWLRIDD---LIAHGISAQDVIDTLRKSNTEFPGGRVE------------ 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G            ++ +    +   E   +        NI   L       
Sbjct: 220 --------TGQRELVVKTRGKVRSVEQFKRLVVKEDQGKVVRLEQVANIEDGLEDQRSMA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            ++  +       A    A + A        ++ + N      S + 
Sbjct: 272 RLNGQPAISLSVRQQSGTNMVGIANEAKAELAKIEADLPDGYELLIVQDNSEFVESSTNE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G       L ++V+ + +   +  LVA  +I   +I T A +  LG +L   ++  + 
Sbjct: 332 AQGELLRGGALAVLVILLFLRSLRGSLVAAVTIPATIISTYAFMLALGFSLNTMTLLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G+ +D +I+V E      ++ ++ F +     +     +  ++++     V + F  
Sbjct: 392 ISVGMIIDDSIVVLENTWRHMQEGKTRFEAAIAAMNEIGFAVIATSLSIAAVFVPVAFME 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLI 534
              G     F +T+  ++++S   A+ +   +   I        +   I  + L     +
Sbjct: 452 GLVGQFFYEFGMTVTFAVIVSTLIALFLSPMLCSKILKLSNTEGRFYKISESILGGIETV 511

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVD--- 590
              +    ++ R   V  +I     S+ LL   G  +     +G  Q+ V A        
Sbjct: 512 YSGLLGFALKRRLLIVLAAIGVFAGSVMLLPLIGQEFAPTADEGQFQVQVEAPTGSSIGQ 571

Query: 591 -------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  +  + + L +++    +       +  + ++  +  D   +T   + V     
Sbjct: 572 TSKIAYEIEEIMATLPAIKDIYTTVGGQYEGQTTVAQVMVRMVDKSGRTVSQDDVMGMAR 631

Query: 644 EIVPLSTIQNTEI 656
           E +   +     +
Sbjct: 632 ERLQRFSHLRISV 644



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 81/243 (33%), Gaps = 15/243 (6%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT--RVLEMVK 639
            V   +  ++     +  S+   +         +           +       ++   + 
Sbjct: 251 VVRLEQVANIEDGLEDQRSMARLNGQPAISLSVRQQSGTNMVGIANEAKAELAKIEADLP 310

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                ++     +  E    +   EL+R G +        +L+ +        +L A  T
Sbjct: 311 DGYELLIVQDNSEFVESSTNEAQGELLRGGALA-------VLVILLFLRSLRGSLVAAVT 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +   I  T  F    G   N   + A+   +G  ++D +VV +      +      +  +
Sbjct: 364 IPATIISTYAFMLALGFSLNTMTLLALTISVGMIIDDSIVVLEN---TWRHMQEGKTRFE 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
               ++NE     + TS++     +P+A      G     F + + F ++V+   ++F++
Sbjct: 421 AAIAAMNEIGFAVIATSLSIAAVFVPVAFMEGLVGQFFYEFGMTVTFAVIVSTLIALFLS 480

Query: 817 API 819
             +
Sbjct: 481 PML 483



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 87/242 (35%), Gaps = 7/242 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              + S+            ++   V +        A    ++ V+   +++     +    
Sbjct: 778  RTVASIDNSFGPVSIERQDRRRQVTILANLEGGKALGEAVQEVESVASDVGLPDGVTGVF 837

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALF 714
                 +  E     I  ++++ +   + +  +F+ Y      + +L L I   LG  AL 
Sbjct: 838  TGTADMMAESFASIIFALVLAVVLTYMVLAAQFESYLHPFTIMLSLPLSIGGALGGLALT 897

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ ++  ++ L+G    + +++ D       L +  ++  D + K+    L   + 
Sbjct: 898  GRTLNIFSMIGMVMLMGLVTKNAILLVD---YTNLLRSRGLNKDDALRKAGPTRLRPILM 954

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+ +    ++P+ +    G          +  G++ +   ++ +   +   I D     +
Sbjct: 955  TAFSTIAGMIPITLGLGDGAESRAPMGTCVVGGMLTSTILTLVVIPVVYSLIDDLSGWFS 1014

Query: 832  RI 833
            R+
Sbjct: 1015 RL 1016


>gi|194291244|ref|YP_002007151.1| multidrug transporter rnd family [Cupriavidus taiwanensis LMG
           19424]
 gi|193225079|emb|CAQ71090.1| putative multidrug transporter, RND family [Cupriavidus taiwanensis
           LMG 19424]
          Length = 1065

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 71/516 (13%), Positives = 150/516 (29%), Gaps = 37/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   +   G++       P   +   PS                    L   
Sbjct: 9   RRPVMTVLLCLAVVVTGIV-----LYPTIPIAALPSFNSPVIQ---------VTATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +    +   S     + IT+ F + R  ++ A  V   L  
Sbjct: 55  SPETMAASVATQLEKQFATIPGVSVISSSNTLGNSSITIEFNNDRDIDDAAVDVQAALFR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L ++              + VL    I+       + +          +       
Sbjct: 115 AQRSLPIEMTTPPSYRKVNPADAPVLL-LAINSPAMSLADLNAFGDNLISPTLATLPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +     P  L     T  +++      N +            DS     
Sbjct: 174 QVQIFGQKRFAVRVRAHPDALAARGLTLDELATALNRANANTPVGTL------DSARQTL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +++                     I   +             +   +  +  G 
Sbjct: 228 TIQANRQLTSAD-------------AFRNIIVASQPNGALVRLSDVAEVEDSVETIKTGS 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        L           V      +   S   
Sbjct: 275 WLNNERSIVLAVLRQPDANTVAVVDAIHAALPRLIQQMPGSINVSVVNDRSRSIRESIHD 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A+   LV++V+F+ +      L+   S+ +++I T+AL+   G +L   S+  I 
Sbjct: 335 VQFTLALTVALVVMVIFLFLRRAAATLIPTVSLPISLIGTVALMKAFGYSLDNVSLLAIT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I            +  +G      TI   +I+ +   + +FF  
Sbjct: 395 LAVGLVVDDAIVMLENIVRHIEDGVPPLKAALVGSREMGFTILSISISLVAVFIPIFFMP 454

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G        FA  + LSIL+S   +++++  +    
Sbjct: 455 GVIGLLFHEFAAVVSLSILVSALVSLTLIPMLCARF 490



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 84/252 (33%), Gaps = 12/252 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + V +     L  +    E     +             + L            V+
Sbjct: 239 DAFRNIIVASQPNGALVRLSDVAEVEDSVETIKTGSWLNNERSIVLAVLRQPDANTVAVV 298

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKW 690
           + +   +  ++          V    SR +          + + ++ + M+I++++R + 
Sbjct: 299 DAIHAALPRLIQQMPGSINVSVVNDRSRSIRESIHDVQFTLALTVALVVMVIFLFLR-RA 357

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    +L + +  T+     FG   +  ++ A+   +G  V+D +V+ + +   ++ 
Sbjct: 358 AATLIPTVSLPISLIGTVALMKAFGYSLDNVSLLAITLAVGLVVDDAIVMLENI---VRH 414

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               +           E     +  S++     +P+    G +      FA  ++  I+V
Sbjct: 415 IEDGVPPLKAALVGSREMGFTILSISISLVAVFIPIFFMPGVIGLLFHEFAAVVSLSILV 474

Query: 808 AASSSIFIAAPI 819
           +A  S+ +   +
Sbjct: 475 SALVSLTLIPML 486



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 84/252 (33%), Gaps = 12/252 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +     + V +S   +    +    ++ Q           L        A  R+    ++
Sbjct: 795  VRSKTGQMVPVSAFATTERRVGPIAVNHQGQLPSVTVSFNLAPGAALGDASARIGRYKQE 854

Query: 641  KITEIVPLSTIQNTEIVGPKIS--RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
                    ++      V       + ++    + VI + + +L        +   L  + 
Sbjct: 855  IAMPTSIFTSWGGDAAVFQSSQATQIVLLVAAIAVIYTLLGVL-----YESYIHPLTILA 909

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             L       L    LF +E +L AV  VL LIG    + +++ D            ++  
Sbjct: 910  GLPSAAVGALLTLFLFNVELSLIAVIGVLMLIGIVKKNAIMMID--FALAAQREQGMTPA 967

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFI 815
              I ++        + T+ AA +  LP+A+    G  +     + +  G++ +   ++FI
Sbjct: 968  RAIRQACLLRFRPIMMTTFAAVMGALPLALGLGAGAELRQPLGLAVVGGLLFSQVITLFI 1027

Query: 816  AAPILLFIYDWR 827
               I L +  + 
Sbjct: 1028 TPVIYLALDRFS 1039


>gi|197103868|ref|YP_002129245.1| cation/multidrug efflux pump [Phenylobacterium zucineum HLK1]
 gi|196477288|gb|ACG76816.1| cation/multidrug efflux pump [Phenylobacterium zucineum HLK1]
          Length = 1042

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/665 (10%), Positives = 179/665 (26%), Gaps = 37/665 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   + +L+  +   GL+           + ++P+                  +     
Sbjct: 18  RNPVPVAVLFIGLVVAGLIA-----YAGLHIKQYPNIQFPMV---------AVTVTQSGA 63

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +         + Q  +  ++ F      +   D+V   +  
Sbjct: 64  APGEMETQITRPVEDAIAGISGVNNVQSVVTQGVSTTSIEFEMGEDLQKKTDEVRAKIDQ 123

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D  +  +          +++   +        E S  +       +  +    
Sbjct: 124 VRQNLPRDIDEPTVTQVEIDSAFPIVT-YAVAAPAMSDEELSWFVDDTVARTLQTANGVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP +L     T A+++           G    V     +     
Sbjct: 183 QVSRVGGVSREINVIVDPDKLAARGLTAAQLNNALRGFQVDAPGGRVKVGGREQTLRVLG 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            VE   ++                     +++      R         +G   + V    
Sbjct: 243 SVETVAQL--------------------REMTIATGDGRFVKLTDVAEVGDGGSEVRGFA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +     S     S     + A    A L      +        +V     +   
Sbjct: 283 RLNGRPVVGFQISKTRDSSDVAVEDAAAEKLADLEKAHPGVTFTK-IFSSVDETRANFRA 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        L  +V+   +   +  L+   ++ +++I T  ++ + G +L + ++  + 
Sbjct: 342 TQHVLLEGMLLAALVVLFFLRDWRATLITVLAMPVSLIPTFFVMKMAGFSLNVVTLLALT 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I +  ++    F +   G       +  + +  ++    + F  
Sbjct: 402 LVIGILVDDAIVEIENIEKRVQRGMRPFEAALEGADAIGLAVVATTMAIVVVFTPVSFMP 461

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G   + F        +  +F ++ + R +   +  Y    +   +    F          
Sbjct: 462 GIPGQFFKEFGLTVSVAVLF-SLLVARMLTPLLAAYFLKPTAKPHERKPFKGFYRDALEW 520

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            +  R        L  I S+ L       +            +   P         +   
Sbjct: 521 ALGHRILASLAGGLIFIGSVALAGLLPQGFQPAGDPDYIYVNVQGPPGATVSDMEQIAQS 580

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               +  Q    +    V                ++    IT ++      +   +  ++
Sbjct: 581 VTAVMKRQPEVTDVFSQVGTTVANFGPGGGPGSSDLRSGTITVLLSPDRRVSGAELKDRV 640

Query: 662 SRELI 666
             +L 
Sbjct: 641 RDDLR 645



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 69/214 (32%), Gaps = 6/214 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +    VA           + +  P  T         +          V +    +A
Sbjct: 294 ISKTRDSSDVAVEDAAAEKLADLEKAHPGVTFTKIFSSVDETRANFRATQHVLLEGMLLA 353

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            L+ ++    W   L  +  + + +  T     + G   N+  + A+  +IG  V+D +V
Sbjct: 354 ALVVLFFLRDWRATLITVLAMPVSLIPTFFVMKMAGFSLNVVTLLALTLVIGILVDDAIV 413

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
             + +    K     +   +   +  +      V T+MA  +   P++      G     
Sbjct: 414 EIENI---EKRVQRGMRPFEAALEGADAIGLAVVATTMAIVVVFTPVSFMPGIPGQFFKE 470

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           F + ++  ++ +   +  +   +  +     AK 
Sbjct: 471 FGLTVSVAVLFSLLVARMLTPLLAAYFLKPTAKP 504



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 80/232 (34%), Gaps = 7/232 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +             ++  ++      +     +   + +Q +  D V      + V   
Sbjct: 770 QLRVPTATGGVTTLDSVADVEFQAGPARIDRLNRQRQITIQAELADGVELGEANQAVMDL 829

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTL 700
                  + ++   +   +   E+     V +      +   + + F+ +F  L  ++ L
Sbjct: 830 PIMKNLPAGVRPGAVGDAEAMAEMFAGFGVAIFTGVGMIYAVLVLLFRSFFKPLVILSAL 889

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +        +F +  ++ ++   L L+G +  + +++ +     ++     +S  D 
Sbjct: 890 PLAVGGAFIGLLIFNLSLSIPSLIGFLMLLGLAAKNSILLVE---YAIEREREGVSQHDA 946

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
           +  +  E     V T++A    +LP A+    G       A+ +  G++ + 
Sbjct: 947 LIDACRERARPIVMTTLAMAAGMLPTALALEKGAEFRQPMAVAVIGGLITST 998


>gi|296121487|ref|YP_003629265.1| acriflavin resistance protein [Planctomyces limnophilus DSM 3776]
 gi|296013827|gb|ADG67066.1| acriflavin resistance protein [Planctomyces limnophilus DSM 3776]
          Length = 1051

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 149/544 (27%), Gaps = 42/544 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                V+L   I   G++           +   P                   +V     
Sbjct: 10  RPVATVLLMVAILLSGMIA-----YRLLPVSALPQVDYPT-----------IQVVTFYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    +     +        +     + ITL F      +  A ++   + 
Sbjct: 54  ASAHVMASSVTAPLERQFGQVPGLQQMTSTSSDGSSVITLQFELELDIDVAAQQIQSSIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             ++ L  D     + T T    + VL+   +        +       +   +I      
Sbjct: 114 VASTFLPRDLPNPPIYTKTNPADAPVLT-LALTSQTLPLSKVQDLADTRLAQKISQLSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  + +P+ L  L  +   +       N ++    F       + G  
Sbjct: 173 GLVSLSGGQKPAVRIQANPAALSHLGLSLDDIRNVVAGANVNQAKGSFDGPKQAFTIGAN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +                           D+                 +   +      
Sbjct: 233 DQI--------------------YAASQYADLIVAYRNGAPVLLSEVARVIDGVENERLA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +    ++    L   L+          +          S  
Sbjct: 273 AWLNTTPAVLVNIQRQPGANTIEVVDRIRDLLPQLKESLPSAIDIHILTDRSQTVRESVE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV++V+F+ +   +   +   ++ L+++ T  ++ LLG +L   ++  +
Sbjct: 333 AVHFELLLTIALVVLVIFLFLRNLRATFIPSVAVPLSLVGTFGVMYLLGFSLNNLTLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I++ E I     +  S   +   G  +   TI   +++ +   + L F 
Sbjct: 393 TISTGFVVDDAIVMIENIIRYLEEGDSPLEASLKGARQIGFTIISLSVSLIAVLIPLLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FA+T+ ++IL+S   ++++   M   +++                     
Sbjct: 453 GDIVGRLFREFAVTLSVTILVSAVVSLTLTPMMCARLLKETHQAQQSWLYRQSEAFFEWI 512

Query: 538 IAIQ 541
           IA  
Sbjct: 513 IARY 516



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 63/148 (42%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + ++I++++R            + L +  T G   L G   N   + A+    G+
Sbjct: 340 LTIALVVLVIFLFLR-NLRATFIPSVAVPLSLVGTFGVMYLLGFSLNNLTLMALTISTGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +   ++      S  +   K   +     +  S++    ++P+   G  
Sbjct: 399 VVDDAIVMIENI---IRYLEEGDSPLEASLKGARQIGFTIISLSVSLIAVLIPLLFMGDI 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FA+ ++  I+V+A  S+ +  
Sbjct: 456 VGRLFREFAVTLSVTILVSAVVSLTLTP 483



 Score = 45.5 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 91/238 (38%), Gaps = 6/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +   +L+  + +       +  +V + +     V+    +  + +   E+   + I    
Sbjct: 784  NTFATLEDSNTALTVNHQGQFPVVTVSFNLAPQVSLGAAVAAIDRVHEELDMPAGIVGGF 843

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +     +R     ++ + + + I + + ++ +   L  ++TL       L    L 
Sbjct: 844  QGTAEAFTASLRSTPWLILAALVTVYIVLGVLYESFIHPLTILSTLPSAGVGALAAMLLC 903

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             ++ ++  +  ++ LIG    + +++ D      ++     S  + I ++        + 
Sbjct: 904  RVDLSVIGLIGIILLIGIVKKNAIMMIDFAIDAQRVDRK--SAEEAIFEACLLRFRPIMM 961

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+MAA +  +P+A+    G  +     I +  G++V+   +++    I L+      +
Sbjct: 962  TTMAALLGAVPLAIGHGSGSELRSPLGITIIGGLIVSQLLTLYTTPVIFLWFEHLGER 1019


>gi|264678419|ref|YP_003278326.1| acriflavin resistance protein [Comamonas testosteroni CNB-2]
 gi|262208932|gb|ACY33030.1| acriflavin resistance protein [Comamonas testosteroni CNB-2]
          Length = 1084

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 55/537 (10%), Positives = 144/537 (26%), Gaps = 51/537 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N     +L      +G+         +  +D+FP+      +           +    
Sbjct: 8   LKNPVLATMLMLAFVVLGIFS-----YQRLKVDQFPNIEFPVVV---------VTVEYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + +           +  + + + F         AD V   + 
Sbjct: 54  ASPEIVESEVTKKIEEAVNSVAGINALTSRSYEGTSVVIIEFQLHIDGRRAADDVREKVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ--------------VISHAIEQSMEI 166
            V   L  + K+  ++       ++       D                   AI  +   
Sbjct: 114 SVRPTLRDEVKEPRVIRFDPASTAVWSLAVLPDPHALHGETAANGQSVTPPDAIALTSWA 173

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
            +    ++                 ++    DP  L     T  +++      N      
Sbjct: 174 DQVLKKRLENVRGVGAVNMVGATKREINVYLDPQALEAYSITPEQVAQAVRAENQDLPVG 233

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
               +           ++   E                       I              
Sbjct: 234 AIRSKAQERVVQIDARIQRPEEF--------------------ARIIVAYRNGAPIRVGQ 273

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
              +      +    +                 +    ++        +     P     
Sbjct: 274 LARVQDDAQELQTLALYNGSRTLLMSVQKAQDENTIEVVDGLNAAIKAIAPELPPGVRLQ 333

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
               N  A        + T    A L ++++F+ +   +  ++   ++ + +I T   + 
Sbjct: 334 AIADNSRAIRVGVDNVRQTLIEGALLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMY 393

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
             G ++ + ++  + L +GL +D  I+V E I    +  ++ + +   G       +  +
Sbjct: 394 WFGFSINMVTLMALSLCVGLLIDDAIVVRENIVRHVQMGKNAYQAAMEGTQEIGLAVLAT 453

Query: 467 NITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            ++ +   + + F G   G     F IT+  ++LISMF + ++   +          
Sbjct: 454 TLSIVAVFLPIGFMGGIIGQFFHEFGITIVAAVLISMFVSFTLDPMLSSVWHDPAIH 510



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + +LI       W   +    TL + +  T  F   FG   N+  + A+   +G 
Sbjct: 354 IEGALLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMYWFGFSINMVTLMALSLCVGL 413

Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
            ++D +VV    R+N+  +     +      +   E     + T+++     LP+   G 
Sbjct: 414 LIDDAIVV----RENIVRHVQMGKNAYQAAMEGTQEIGLAVLATTLSIVAVFLPIGFMGG 469

Query: 791 --GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             G     F I +   ++++   S  +   +    +D
Sbjct: 470 IIGQFFHEFGITIVAAVLISMFVSFTLDPMLSSVWHD 506



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 68/188 (36%), Gaps = 12/188 (6%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
             V   +K+ +  I              K   E     I  ++++ I + + +  +F  + 
Sbjct: 847  EVTADIKQALATIPMPPGYSYQFSGAAKNMAESFGYAISALMLAIIFIYMILASQFKSFL 906

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD--------R 743
              L  +T+L L +   +    +FG   ++ ++  V+ L+G    + +++ D        R
Sbjct: 907  QPLALMTSLPLTLIGVVLALMMFGSALSMFSIIGVVMLMGLVTKNAILLVDFAIRAREPR 966

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
              +        +   + +  +    L   + T++A    ++P+A     G          
Sbjct: 967  TNEASGQTEPGLPRNEALLLAARVRLRPILMTTLAMIFGMVPLAFAVTEGSEQRAPMGQA 1026

Query: 801  MAFGIVVA 808
            +  G++ +
Sbjct: 1027 VIGGVITS 1034


>gi|254468360|ref|ZP_05081766.1| acriflavin resistance protein [beta proteobacterium KB13]
 gi|207087170|gb|EDZ64453.1| acriflavin resistance protein [beta proteobacterium KB13]
          Length = 1015

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 63/598 (10%), Positives = 170/598 (28%), Gaps = 44/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R + +  ++  +    G +        +  +DRFP                     LE  
Sbjct: 9   RRHVFAWMISFIFILFGYI-----GYQKIGVDRFPMIEFPVL---------SVTTTLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +              + +T++F   +  E   ++V   +  
Sbjct: 55  NPEIIDSSITNLIETAVNTVTGIESIKSQSSPGVSVVTITFELDKDIEVAFNEVQSKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++ +L  D    ++         I+      D       + ++        +I   +   
Sbjct: 115 LSRRLPDDIVPPVVRKVETNASPIMWLGLTGD---RTTQQLNLYANNILKKKIETIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    +    D  ++  L  T   +       +    G                
Sbjct: 172 EVRLGGRRDRTIRVNLDLEKMASLNVTADDLKSAFRKEHIQLPGGYL------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +          + +    K + ++                +I   L       
Sbjct: 219 -------VRNQSEKMFKLDLEFHKVKDLENLVVSYRDKTSIKLKDISDIEDGLTDYRQIA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGIL-AAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          A  +    I+         +R    P     +   +         
Sbjct: 272 RYNFNPSIGLGIIKVANSNTVQIIDKVKEKIDTEIRPNLPPGLNLDISTDDSIFIKEMIK 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      L  +V+F+ +   +   +   +I +++   +A++   G T    ++  +
Sbjct: 332 SLIDHIIEGTLLAALVVFIFLQSIRSTFIISAAIPISLFGAIAVMYFFGYTFNSMTLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L IG+ VD  I+V E I    R  ++   +   G       +  S++  +     + + 
Sbjct: 392 ILLIGVVVDDAIVVLENIFRHQRMEKNNIEAAIKGSREVVFAVLASSLALISIFAPVIYM 451

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF---LI 534
            G   +    FA+ + + I++S+  ++++   +    +  +  K    N L+ FF     
Sbjct: 452 DGIIGKFFESFAVVVTVGIIVSLLVSLTLTPMLCSRYLNKQDAKKNYFNFLNSFFEKLEQ 511

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               ++Q++      + +  L  + +    F       +      +  V    P+  +
Sbjct: 512 NYKHSLQYVLKHRLKILLITLLIVLTSGYFFKAAKKEFVPETDESRFTVTFKTPLGSN 569



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 92/242 (38%), Gaps = 12/242 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +      D+    ++   +   + +     G          Q  D   + ++   ++  
Sbjct: 251 SIKLKDISDIEDGLTDYRQIARYNFNPSIGLGIIKVANSNTVQIIDK-VKEKIDTEIRPN 309

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +   + L    +  I   ++ + LI   I G +++A+ + I++               + 
Sbjct: 310 LPPGLNLDISTDDSIFIKEMIKSLIDHIIEGTLLAALVVFIFLQ---SIRSTFIISAAIP 366

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +   +     FG  FN   + A++ LIG  V+D +VV + +    +      +  +  
Sbjct: 367 ISLFGAIAVMYFFGYTFNSMTLLALILLIGVVVDDAIVVLENI---FRHQRMEKNNIEAA 423

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAA 817
            K   E +   + +S+A  IS+    ++   +I     SFA+ +  GI+V+   S+ +  
Sbjct: 424 IKGSREVVFAVLASSLA-LISIFAPVIYMDGIIGKFFESFAVVVTVGIIVSLLVSLTLTP 482

Query: 818 PI 819
            +
Sbjct: 483 ML 484



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 65/191 (34%), Gaps = 13/191 (6%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI--RFKWYFA 693
            E +         +   + +     +          +  I S   +L+Y+ +   F  +F 
Sbjct: 816  EAIDNIENISNQIIPSEYSIKYSGQAKEFSKTFSNIIFIFSLATVLLYMVLSSLFNSFFQ 875

Query: 694  LGAITTLILDITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
               I  L   +    G F   L G   N+ ++  ++ L+G    + +++ D         
Sbjct: 876  PF-IVMLAQPLAIIGGVFLLWLSGNSLNIYSMIGLVLLVGLVAKNSILLVD---LTNHHI 931

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS----FAIPMAFGIVV 807
                   + +  +    L   + TS+   +++LP A +G           ++ +  G++ 
Sbjct: 932  QEGKKVDEALILACPVRLRPVLMTSLTLILALLP-AAFGVGAGSEENGPLSVAIIGGMIS 990

Query: 808  AASSSIFIAAP 818
            +   ++ +   
Sbjct: 991  STLLTLIVIPA 1001


>gi|83745675|ref|ZP_00942733.1| Transmembrane multidrug-efflux system lipoprotein [Ralstonia
           solanacearum UW551]
 gi|83727752|gb|EAP74872.1| Transmembrane multidrug-efflux system lipoprotein [Ralstonia
           solanacearum UW551]
          Length = 1069

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/484 (11%), Positives = 135/484 (27%), Gaps = 17/484 (3%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + T        ++                   +    D++       
Sbjct: 116 AMPRLPDVVQRLGVTTIKSSPDLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLARINGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP+++ +   T  ++       N      + G          Q 
Sbjct: 176 QVQLFGSGDYSMRVWLDPNKVAERGLTANEVVRAIRDQNVQVAAGVIGGSPSVPGTDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    +      
Sbjct: 236 SVNAQGRLKTEQ-------------EFGDIILKSSPNGAVTTLRDVARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L+          +          S   
Sbjct: 283 LLDNKQAVAIPIFQAPGSNALQISDDVRKTMAELKEDFPEGVDYRIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T  L+ + G ++   S+ G+V
Sbjct: 343 VTHTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSIIGTFGLMLMFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAEGLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++        +  +    L     
Sbjct: 463 GLTGQFYKQFALTISISTVISAFNSLTLSPALAALLLKSHDAPKDWLARVMEKSLGWIFH 522

Query: 539 AIQF 542
               
Sbjct: 523 PFNR 526



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    +   + N+     ++ L+G +  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSLFAAMLGVWVSRGDNNIFTQIGLVVLVGLACKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S      ++    L   + TS+A  + V+P+ +    G  +  +  + +  G+
Sbjct: 960  -LELQGRSIVQAAIEACRLRLRPILMTSIAFIMGVVPLVMSTGAGAEMRHAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +    ++  R
Sbjct: 1019 LGVTLFGLFLTPVFYVVLRTLASRRRR 1045



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T G   +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---LAVPVSIIGTFGLMLMFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIAE-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R+   K++ E  G  +  ++      +P+A      G     FA+ ++   V++A
Sbjct: 426 -GLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 FNS 487


>gi|186682178|ref|YP_001865374.1| acriflavin resistance protein [Nostoc punctiforme PCC 73102]
 gi|186464630|gb|ACC80431.1| acriflavin resistance protein [Nostoc punctiforme PCC 73102]
          Length = 1034

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/555 (11%), Positives = 153/555 (27%), Gaps = 46/555 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ + I   G +           +   PS                  + +   
Sbjct: 9   RRPIMTTLVMTAILIFGFMS-----YRLLPISDLPSVDYPT-------------IQVSAS 50

Query: 62  EDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +        ++  S +        +    Q +ITL F  SR  ++ A  V  
Sbjct: 51  RPGASPETMAASVARPLEKQFSSIAGLDSLNSTSTLGQTQITLQFNLSRNIDDAAQDVEA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + G + ++  D       +        +L    +D       +           ++   
Sbjct: 111 AISGASGQIATDLPNPPTYSKVNPADQPILY-LYLDSPTLPLSQVDNYAETYLAQKLSTI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q             + DP +L        +++      N +             + 
Sbjct: 170 NGVAQVAVYGSQKYAARIQLDPQQLAARQIGLDQVATAIQQGNVNLPTGSLSGNHKNFTV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +ED                          +          +      I   +   
Sbjct: 230 QTNGQLEDAA--------------------AYRQLIVSYKDGMPIYLNQLGRIIDSVEND 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +    ++T   L   LR          +      +   
Sbjct: 270 KVASWYNNTRAIILTIQRQPGTNTVQVVDTIKNLLPKLREQIPASVEIGILYDASQSIRD 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T  +   LV++V+F+ +      ++   ++ +++I T A++ LL  +L   S+
Sbjct: 330 SVDDVRFTLILTIALVILVIFIFLRNLSATVIPSLALPVSLIGTFAVMYLLHYSLDNLSL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + L +G  VD  I++ E I       +    +   G      TI    ++ +   + +
Sbjct: 390 MALTLSVGFVVDDAIVMLENIVRHIEMGERPLEAALNGSREIGFTILSMTLSLVAVFIPM 449

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G     FA+T+ ++IL+S F ++++   +    +R     +      +  ++ 
Sbjct: 450 LFMSEVLGRLFHEFAVTIAVAILVSGFVSLTLTPMLCSRFLRPVDHANQSRLYQASEYVF 509

Query: 535 PDCIAIQFMRARFWG 549
              + +     +   
Sbjct: 510 DRFLGLYDWSLKKVL 524



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/228 (11%), Positives = 83/228 (36%), Gaps = 14/228 (6%)

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           +   +             + L  Q        +V++ +K  + ++           +   
Sbjct: 263 IDSVENDKVASWYNNTRAIILTIQRQPGTNTVQVVDTIKNLLPKLREQIPASVEIGILYD 322

Query: 661 ISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            S+ +          + + I+ + ++I+I++R      +     L + +  T     L  
Sbjct: 323 ASQSIRDSVDDVRFTLILTIALVILVIFIFLR-NLSATVIPSLALPVSLIGTFAVMYLLH 381

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              +  ++ A+   +G+ V+D +V+ + +   ++         +       E +G ++ +
Sbjct: 382 YSLDNLSLMALTLSVGFVVDDAIVMLENI---VRHIEMGERPLEAALNGSRE-IGFTILS 437

Query: 776 SMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
              + ++V    ++   V+      FA+ +A  I+V+   S+ +   +
Sbjct: 438 MTLSLVAVFIPMLFMSEVLGRLFHEFAVTIAVAILVSGFVSLTLTPML 485



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 92/260 (35%), Gaps = 17/260 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +       V L       + +    ++             L        A   + +++ +
Sbjct: 778  INSSTGVAVPLKTFAKLSQGVSPLMVNHNGRMNAATISFNLAPGVSLGNANEEIQKLIDR 837

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             I   +  S    +++    +    +   I  ++I  I  ++Y      +   +  ++ L
Sbjct: 838  VIPASISTSFQGASQVFQSSLPSLGLLLAIAILVIYLILGILY----EDFIHPITILSGL 893

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM----RKNMKLYTTSIS 756
                   L    +F +E N+ +   ++ L+G    + +++ D      R+ +K       
Sbjct: 894  PSAGFGALLTLIIFHVELNVYSFIGIILLVGIVKKNGIMMVDFAIVAQREELKK------ 947

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
              + I ++        + T+MAA +  LP+A+    G        I +  G+V +   ++
Sbjct: 948  PSEAIYQACLVRFRPIMMTTMAALMGTLPIAIGFGAGSESRRPLGIAVVGGLVFSQILTL 1007

Query: 814  FIAAPILLFIYDWRAKNARI 833
            ++     +++  WR K  ++
Sbjct: 1008 YLTPVFYIYMESWRKKLNQV 1027


>gi|255533617|ref|YP_003093989.1| acriflavin resistance protein [Pedobacter heparinus DSM 2366]
 gi|255346601|gb|ACU05927.1| acriflavin resistance protein [Pedobacter heparinus DSM 2366]
          Length = 1036

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 76/639 (11%), Positives = 190/639 (29%), Gaps = 42/639 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  MI   G++           +  +P+  P   I+                
Sbjct: 9   KRPVLAIVMNLMILLFGVI-----GYNFLGIREYPNIDP-TVIN--------VRTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +        S  Q  + IT+ F  ++  ++ A+ V   +  
Sbjct: 55  NSDIIESQITEPLEKSINGIDGIRNISSSSNQGSSNITIEFNLNKNIDDAANDVRDKVSE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D   N +V+  +     V++   +     + +E S        D++       
Sbjct: 115 AARRLPKDIDGNPVVSKADANSDAVIT-MTVQSDKRNVMELSDYAENVIADRLQTITGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +     P +L     T+  +                        D    
Sbjct: 174 SIQIMGQRKYAMRIRISPDKLAAYGLTSQDIVAAL--------------------DRENV 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +   ++                 +           
Sbjct: 214 ELPSGKITGSNTELIVKTLGKLTNAEQFNNLILKNDTDNVVRLKDVGFVELGSENEETIL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +   +       +   +     +      A L           +          S + 
Sbjct: 274 RESGKPMVAVGLIPQPGANYLDISKEFDKRFAQLEKDVPQDIKLNISLDTTKFIKASVTE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++++++        +     I ++++ T  ++ + G ++ + S+  +V
Sbjct: 334 VAETIILSLILVILIIYLFFRDWAIAIRPLIDIPVSLVFTFFIMYIFGFSINVLSLLAVV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFFF 480
           L  GL VD  I+V E I ++  +  S F +   G +  +   I  S   A +   V+F  
Sbjct: 394 LATGLVVDDGIVVTENIFKKVEEGYSPFEAAIKGSNEIFFAVISISITLAAVFLPVIFLQ 453

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP--- 535
           G  G   R F + +G ++LIS F ++++   +  ++++    K      L+  + +    
Sbjct: 454 GFVGRLFREFGVVIGAAVLISAFVSLTLTPMLNAYLMKKTGHKKSRFYELTEPYFVKLND 513

Query: 536 -DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                +     R W     I+  +  I L +         +     + +    P   S  
Sbjct: 514 GYAEKLNKFLDRKWLAIPIIVACVGIIVLFWKILPKETAPYDDRSAINMNLTTPEGSSFA 573

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            ++   +++ D+   +   +K  +       G + A   
Sbjct: 574 YTDRFMMKVQDMINDSVPEKKVNITITSPGFGGTGATNS 612



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 60/151 (39%), Gaps = 7/151 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  A+  +  + + +  T     +FG   N+ ++ AV+   G  V+D +VV + + 
Sbjct: 352 FFRDWAIAIRPLIDIPVSLVFTFFIMYIFGFSINVLSLLAVVLATGLVVDDGIVVTENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
              K      S  +   K  NE     +    T  A F+ V+ +  + G +   F + + 
Sbjct: 411 --FKKVEEGYSPFEAAIKGSNEIFFAVISISITLAAVFLPVIFLQGFVGRLFREFGVVIG 468

Query: 803 FGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
             ++++A  S+ +   +    +     K +R
Sbjct: 469 AAVLISAFVSLTLTPMLNAYLMKKTGHKKSR 499



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 56/148 (37%), Gaps = 6/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   +  I T+ + +        LFG  +N+ +    + LIG    + +++ +      
Sbjct: 877  SFIDPIIIILTVPMAVAGAFLSLWLFGQSWNIFSQIGTIMLIGLVTKNGILIVEFAN--- 933

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
            +L     S  D I ++    L   + TS+A  I  LP+A+  G+         I +  G 
Sbjct: 934  QLKEKGKSVHDAIREASVSRLRPILMTSLAIAIGALPIAMALGAAAKSRMGMGIVIVGGT 993

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
              A   ++F+   I  +       N  +
Sbjct: 994  TFALILTLFVIPAIYSYWSKEHKTNTEL 1021


>gi|282890292|ref|ZP_06298822.1| hypothetical protein pah_c014o188 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499949|gb|EFB42238.1| hypothetical protein pah_c014o188 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 1040

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/565 (12%), Positives = 165/565 (29%), Gaps = 39/565 (6%)

Query: 27  LPQSMLDRFPSAMPKNR-ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
             +  L  +P   P    I  G                D V   +    + + S ++   
Sbjct: 29  FFKLPLREYPDVNPPVVSIRTG----------YTGASADIVETKITQLIEGVVSGIEGVH 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
                 +   + IT+ F  +R  +  A  V   +  + + L  +     +         +
Sbjct: 79  TIESESQDGDSSITIEFNINRDIDTAAADVRDRVSRILNDLPPEADTPEITKLDSNTHEV 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +  + + D    +A+E +    R  +D++ I +   +   +      +    D   L   
Sbjct: 139 IWLRISSD--RYNAMELTDYAHRYLVDRLAIVDGVARVRITGERRYAMRIWLDRKALAAR 196

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T   +       N               +   + L E                     
Sbjct: 197 GLTVDDIEQALKRENIELPAGRIESYKREFTIRTKRLYETA------------------- 237

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                 +     G           I                       S +++ +     
Sbjct: 238 DDFKNLVIKRGDGDYLVRLGDIAEIEIGPEDKRTELRANGLPAIGIGISKQSKANTLEVT 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                    ++A        +V          +      T AI   LV+ ++F+ +   +
Sbjct: 298 RGVRKELQAIQAILPKDIHVVVSFDGSIFIEAAIWEVYLTLAITLLLVIGIIFIFLGSFR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             ++   +I +++I    LL +L  ++ L ++  +VL IGL VD  I+V E I ++    
Sbjct: 358 ATIIPAITIPISLISVFILLYVLNYSINLLTLLALVLAIGLVVDDAIVVLENIYKKIEAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFT 502
                +  +G  +    +  + +  +   + + F  G        FA+T+  S+  S   
Sbjct: 418 MPPLAAAFIGTRQVSFAVVATTVVLIAVFIPIAFLEGHIGKLFTEFALTLAGSVAFSSMV 477

Query: 503 AISIVRAMMIFIIRYKKMK----SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           A+++   +   I++ +       ++    ++R         +  ++   + +  S+    
Sbjct: 478 ALTLCPMLCSKILKKEYSISYLGNLTSGFINRTHGTYQKSLVWVLKHPTFIILTSVTSLP 537

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGV 583
               L  T    +      G    +
Sbjct: 538 LIYILFTTLPDEFEPLEDRGYFYTL 562



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 64/160 (40%), Gaps = 11/160 (6%)

Query: 670  IVGVIISAIAMLIYIWIRFKW---YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + ++ I + + +  +F+     F +  I  L + +    G +   GI  N+ +   +
Sbjct: 858  LFAIALALIIVYLVLAAQFESFIHPFIILTIVPLAI-LGGLWGIYMW-GITINIYSQIGM 915

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG S  + +++ +      +L          + ++        + T+++  I  LP+
Sbjct: 916  IMLIGLSAKNSILIVEFAN---QLRDEGKDILSALKEASLSRFRPILMTALSTAIGALPL 972

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +    G     S  + +  G+  +   +++I     +++
Sbjct: 973  VIATGAGAESRISIGVVVFVGVFFSTFLTLYIVPAFYVWM 1012



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 73/204 (35%), Gaps = 7/204 (3%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             +    +++  TR +    + I  I+P          G       I +  + + I+ + 
Sbjct: 285 ISKQSKANTLEVTRGVRKELQAIQAILPKDIHVVVSFDGSIFIEAAIWEVYLTLAITLLL 344

Query: 680 MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           ++  I+I    +   +    T+ + +        +     NL  + A++  IG  V+D +
Sbjct: 345 VIGIIFIFLGSFRATIIPAITIPISLISVFILLYVLNYSINLLTLLALVLAIGLVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG--- 795
           VV + +    K     +           +     V T++      +P+A   G +     
Sbjct: 405 VVLENI---YKKIEAGMPPLAAAFIGTRQVSFAVVATTVVLIAVFIPIAFLEGHIGKLFT 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ +A  +  ++  ++ +   +
Sbjct: 462 EFALTLAGSVAFSSMVALTLCPML 485


>gi|260548878|ref|ZP_05823100.1| multidrug efflux protein [Acinetobacter sp. RUH2624]
 gi|260408046|gb|EEX01517.1| multidrug efflux protein [Acinetobacter sp. RUH2624]
          Length = 1032

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 66/638 (10%), Positives = 166/638 (26%), Gaps = 48/638 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP+      +                 
Sbjct: 9   KYPVFTIMMMLCLMVLGLAS-----WKRMTVEEFPNVDFPFVV---------VTTQYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +  + +   F         A  V   +  
Sbjct: 55  SPEAVESDITKKLEDQINTISGIKQITSRSSEGSSMVIAEFNLDTSSAIAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   +    ++         I+      +       + S  + ++ + Q+       
Sbjct: 115 VIAQFRDEIDTPIVQRYDPSSSPIMSVVFESN--TMSLAQLSSYVDKKIVPQLKTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  +  P +L+       ++       N          +        Q 
Sbjct: 173 NVNLLGDAKRQIRIKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                           D+          F      +    A +    
Sbjct: 233 KV--------------------IHPFGFGDLVIANKNGSPIFLKQVATVEDTQAELQSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    ++        L+A         V   +      S   
Sbjct: 273 FYNGRTAVSIDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    AGL ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VVRTILEGAGLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+  ++LISMF + ++   +        K K   +             
Sbjct: 453 GLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKKERRLQRFFNHISKLLDG 512

Query: 539 AIQFM--------RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                        R RF  V I                     +  KG I++        
Sbjct: 513 LTHIYEKLLKLALRFRFITVIIAIASLVAALGLSKLIGTEFVPVPDKGEIRIQFETPVDA 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
            L   ++ L  +      F +       +        +
Sbjct: 573 SLEYTQAKLHQVDQIIRQFPDVVSTYGVVNSTIDSGKN 610



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 86/258 (33%), Gaps = 12/258 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+AN+      ++              +        V +           +V++   + +
Sbjct: 244 VIANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSIDILKSSDANVIQVVDKTYQTL 303

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRFKWYFALGAIT 698
            ++           V    S+ +           +  + +A+LI +     +   +    
Sbjct: 304 EKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTILEGAGLAVLIVLLFLGSFRSTVITGL 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISF 757
           TL + +  TL F   FG   N+  + A+   IG  ++D +VV    R+N+  +T      
Sbjct: 364 TLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVV----RENIVRHTELGKDH 419

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIF 814
                    E     + T++      LP+A  GG +      F + ++  ++++   S  
Sbjct: 420 VTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTAVLISMFISFT 479

Query: 815 IAAPILLFIYDWRAKNAR 832
           +   +     D   K  R
Sbjct: 480 LDPMLSAHWKDPVKKKER 497



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 69/188 (36%), Gaps = 10/188 (5%)

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAITTLIL 702
                           + ++       +  I+   + IYI +      +      + +L L
Sbjct: 836  AFKLPAGYTFNTQGANADMAESAGYALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPL 895

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        LF    NL ++  ++ L+G    + +++ D ++   K      S  D I 
Sbjct: 896  SLIGVFLALFLFRSTLNLFSIIGIIMLMGLVTKNAILLIDFIK---KAMEHGESRYDAIL 952

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + T+ A  + ++P+A+    GG      A  +  G++ +   ++ +   I
Sbjct: 953  QAGKTRLRPILMTTSAMVMGMVPLALGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVI 1012

Query: 820  LLFIYDWR 827
              ++ D +
Sbjct: 1013 FTYLDDLK 1020


>gi|255320541|ref|ZP_05361721.1| nodulation protein [Acinetobacter radioresistens SK82]
 gi|262379098|ref|ZP_06072254.1| nodulation protein [Acinetobacter radioresistens SH164]
 gi|255302391|gb|EET81628.1| nodulation protein [Acinetobacter radioresistens SK82]
 gi|262298555|gb|EEY86468.1| nodulation protein [Acinetobacter radioresistens SH164]
          Length = 1034

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/683 (10%), Positives = 189/683 (27%), Gaps = 48/683 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ +P       +          +      
Sbjct: 9   KYPVFTIMMMLCLMVLGLAS-----WQRMGVEEYPDVDFPFVV---------VYTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +        +  +  + I   F         A  V   +  
Sbjct: 55  SPETVESEITKKMEDQINTISGLKKLTSTSSEGLSTIVAEFDLDISSSVAAQDVRDKIAS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   + +  ++        +I+      +       + S  + ++ + Q+   E   
Sbjct: 115 VTAQFRDEIEDPVVERYDPTSSAIMSLVFESNN--MSLKDLSSYLDQRILPQLRTVEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+    DP +LR       ++       N    G              Q 
Sbjct: 173 NVNLLGDAQRQIRIAVDPKKLRSFGVGIDQVINTLKNENVQIPGGALQQPDSELVVEIQA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  +                      ++          +      I    A +    
Sbjct: 233 KVLNPYQFG--------------------ELIIANKQGTPVYLKQVATITDSQAEMETAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L             A  +    ++ A  +   +           V   N  +   +   
Sbjct: 273 YLNGKSAVAIDILRSADANIVDVVKNAYQVIDRIEQQLPAGTTLKVVVDNSESIQSTIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +I++ + +   +  ++   ++ + ++ TL  +   G T+ + ++  + 
Sbjct: 333 VARTIVEGAVLAIIIVLLFLGSFRSTVITGLTLPIALLGTLTFIWAFGFTINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I   +   +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHSDMGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI---- 534
              G     F +T+  ++LISMF + ++   +       K            F       
Sbjct: 453 GIIGRFFYQFGVTVSTAVLISMFVSFTLDPMLSAHWAERKDRPKKQNTLTRFFAWTSKKL 512

Query: 535 -----PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                     ++          +  + S+     L        +       + V    PV
Sbjct: 513 DDLTAVYEKLLRLALRFRLLTVLIAVLSLFGAFALSKLIGTEFVPTPDKGSIRVKFETPV 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D S+  +  +  Q+ +I  Q+ + +  + V            +  + +  +   E     
Sbjct: 573 DASLQYTQAKLQQVENIIRQHPEVQTTYGVINGMTDRGKNHGSIRVTVTPRHEREQTLND 632

Query: 650 TIQNTEIVGPKISRELIRKGIVG 672
              +      ++    I      
Sbjct: 633 LNNDLRNRLQQVGGITITSVASA 655



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 83/238 (34%), Gaps = 8/238 (3%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
              ++   ++ N        +                +++ +   ++   +T++      
Sbjct: 264 SQAEMETAAYLNGKSAVAIDILRSADANIVDVVKNAYQVIDRIEQQLPAGTTLKVVVDNS 323

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             I   +       V  + +A++I +     +   +    TL + +  TL F   FG   
Sbjct: 324 ESIQSTIKDVARTIVEGAVLAIIIVLLFLGSFRSTVITGLTLPIALLGTLTFIWAFGFTI 383

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSM 777
           N+  + A+   IG  ++D +VV    R+N+  ++               E     + T++
Sbjct: 384 NMMTLLALSLSIGLLIDDAIVV----RENIVRHSDMGKDHVTAALDGTKEIGLAVLATTL 439

Query: 778 AAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 LP+A  GG +      F + ++  ++++   S  +   +     + + +  +
Sbjct: 440 TIVAVFLPVAFMGGIIGRFFYQFGVTVSTAVLISMFVSFTLDPMLSAHWAERKDRPKK 497



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 68/163 (41%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             I  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 863  AITAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALYLFNSTMNLFSIIGII 922

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K   + +   D I  +    L   + T+ A  + ++P+A
Sbjct: 923  MLMGLVTKNAILLIDFIK---KGIESGMDRYDAIVAAGTTRLRPILMTTSAMVMGMVPLA 979

Query: 788  V-WG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  G  G      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 980  LGLGESGEQSSPMAHAVIGGVITSTLLTLVVVPIIFTYLDDLK 1022


>gi|222112536|ref|YP_002554800.1| acriflavin resistance protein [Acidovorax ebreus TPSY]
 gi|221731980|gb|ACM34800.1| acriflavin resistance protein [Acidovorax ebreus TPSY]
          Length = 1031

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 80/613 (13%), Positives = 182/613 (29%), Gaps = 39/613 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN     +L+ ++   GLL           +  FP       +             L   
Sbjct: 9   RNPIPAAMLFVLLTLAGLLA-----FRSMKVQNFPDMDLPVVM---------VTASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   +  +       ++      I   F   +  +   D V   +  
Sbjct: 55  APGQLESDVARKIENAIATTQGLKHITSTLTDGTATIAAEFQLEKPVQEAVDDVRSAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D +  ++         I+      +Q+   A   S  +      ++       
Sbjct: 115 VRSDLPADLRDPIITKLELSSQPILAFAIASNQLDDEA--LSWFVDDTLTRRLLAVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    DP +L+ L  T A++S           G    +           
Sbjct: 173 AVNRVGGVAREVRVALDPLKLQALGATAAEVSRQLRQVQVESAGGRAELGGAEQPLRTLA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   EI+ + +                       G R         +   +A      
Sbjct: 233 TVQTAQEIAALEIAL--------------------SGGRHVRLDQVATVTDTVAEPRTAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     S     S              L A    ++L       V         
Sbjct: 273 LLGDKPVIGFEVSRSRGASEVEVGAGVQRALDQLMAEHPHLQLTR-TVDFVDIAQDEYDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +  +V+  ++ L+VI     + LLG ++ + ++  + 
Sbjct: 332 SMKLLYEGAILAVVVVWLFLRDWRATIVSAVALPLSVIPAFIGMHLLGFSINIITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEVENIVRHLRMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G A R F    G +  +++F ++ + R +   +  Y     +      R+       +  
Sbjct: 452 GIAGRFFKQ-FGWTAALAVFASLVVARLLTPMMAAYIMKPMVGHEKEPRWLAAYMRASHW 510

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSNLES 600
            ++ R   +  ++LF + S+ L+      +   D     Q+ +       L+  R+ +  
Sbjct: 511 CLKHRVLTLLGALLFFVGSLALIPLLPSGFIPADDNAQTQVTLELPPGAKLADTRAVVAL 570

Query: 601 LQIGDISFQNFDG 613
                +   + + 
Sbjct: 571 ATERAMGVGHVES 583



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 80/254 (31%), Gaps = 10/254 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           ++ +   R V L  V +  +++     +    D         + +    V     ++   
Sbjct: 244 EIALSGGRHVRLDQVATVTDTVAEPRTAALLGDKPVIGFEVSRSRGASEVEVGAGVQRAL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++    P   +  T         E      +    + +A+++       W   + +   
Sbjct: 304 DQLMAEHPHLQLTRTVDFVDIAQDEYDSSMKLLYEGAILAVVVVWLFLRDWRATIVSAVA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +        L G   N+  + A+  ++G  V+D +V  + +   ++      +   
Sbjct: 364 LPLSVIPAFIGMHLLGFSINIITLLALSLVVGILVDDAIVEVENI---VRHLRMGKTPYQ 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     + T+       LP A   G        F    A  +     +S+ +A
Sbjct: 421 AAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGRFFKQFGWTAALAV----FASLVVA 476

Query: 817 APILLFIYDWRAKN 830
             +   +  +  K 
Sbjct: 477 RLLTPMMAAYIMKP 490



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 86/209 (41%), Gaps = 8/209 (3%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                     V E V++        ++++  ++   ++  EL     + ++   + + I +
Sbjct: 802  ELGERGLGEVTEAVRQLPAVRGLPASVRLIDVGDAEMMGELFASFGLAMLTGVVCIYIVL 861

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
             + FK +   +  +  L L +        L G  F++ ++  ++ L+G +  + +++ + 
Sbjct: 862  VLLFKDFLQPVTILAALPLSLGGAFVALLLAGKSFSMPSLIGLIMLMGIATKNSILLVE- 920

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF----AI 799
                +      +S  D +  + ++     + T++A    ++P+A+  G    SF    A+
Sbjct: 921  --YAIVARRHGMSRMDALLDACHKRARPIIMTTLAMGAGMMPIALALGGADMSFRSPMAV 978

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +  G++ +   S+ +   +  ++ D+  
Sbjct: 979  AVIGGLITSTVLSLLVVPAVFTYVDDFEQ 1007


>gi|300311798|ref|YP_003775890.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
 gi|300074583|gb|ADJ63982.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1051

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/688 (10%), Positives = 184/688 (26%), Gaps = 44/688 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I  +G+        P   +   P       I +   L GGS       
Sbjct: 9   KRPIGTTLLAIAILLVGVA-----VWPLLPVAPLPQVDFPT-IQVTAQLPGGS------- 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +               +ITL F  +R  +  A  V   +  
Sbjct: 56  -PETMASNVAQPLERQFSLIAGLSQMTSQSTLGSTQITLQFDLNRNIDAAALDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              S ++   ++          +         QI       
Sbjct: 115 STGQLPANLPNPPTFRKINPADSPIMI-MSVQSEALPLTVVNDYADNILAQQISQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               + +    +  + DP++L  L  +   +         ++            +     
Sbjct: 174 LVNVNGQQKPAVRIQVDPAKLATLGLSLEDIRGVIATTTVNQPKGTVDGARQAFTVYTND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                      +   + +    +                 A      
Sbjct: 234 QLLKA--------EQWNDMVLAWRNGAPIRVKDIGIAVDGPENNKIAAWAFAGAANTADH 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +T         + +   +   T+         LRA                    S   
Sbjct: 286 SITNGRSIVLAITKQPGANVIETVGRIKAAMPRLRAAIPAAIHVNTLIDRTQTIRASVED 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      L+   ++ L ++ T  ++ ++G +L   S+  + 
Sbjct: 346 VEFTLVLTIALVVMVIFVFLRNVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALT 405

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I     +  +   +   G      TI   +++ +   + L   G
Sbjct: 406 IAVGFVVDDAIVMLENIYRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMG 465

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ L+I +S+  ++++   +    ++ +  +                +
Sbjct: 466 GIVGRLFREFAVTVTLTIAVSVIISLTLTPMLCSRFLKNEHGQRHGKLYQWFERCFDAML 525

Query: 539 AIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD---- 590
           A          +   + +    +  ++  +    +  G   +    + V           
Sbjct: 526 AGYKRGLDVVMKHQFITLMSFIATLALTAVLFIFIPKGFFPQQDNGVIVGFAESAQDTSS 585

Query: 591 ----------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                       VVR + + +     +         F + L+ +          +    +
Sbjct: 586 AAMHERLLKVAEVVRQDPDVIGFAMSAGSTTFNTGQFFIALKPKDQGRTTNADEIIARLR 645

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK 668
                +    +         +   L R 
Sbjct: 646 PKVARIEGVNLFMQASQDINVGGRLSRT 673



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 70/168 (41%), Gaps = 9/168 (5%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+I++++R      L    T+ L I  T G   + G   +  ++ A+   +
Sbjct: 350 LVLTIALVVMVIFVFLR-NVAATLIPSVTVPLAIMGTAGVMYVVGYSLDNLSLMALTIAV 408

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +     ++  +   K   E     +  S++     +P+ + G
Sbjct: 409 GFVVDDAIVMLENI---YRYVEEGMTPLEAALKGAGEIGFTIISISVSLVAVFIPLLLMG 465

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR--AKNARI 833
           G V      FA+ +   I V+   S+ +   +           ++ ++
Sbjct: 466 GIVGRLFREFAVTVTLTIAVSVIISLTLTPMLCSRFLKNEHGQRHGKL 513



 Score = 38.9 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 83/211 (39%), Gaps = 6/211 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + +     V+    +++++K   ++    T+        K   + +      +  + I
Sbjct: 818  VTISFNLAKGVSLGEAVDVIQKTKDQMGVPQTLVGNFQGTAKAFGDSLSSQPYLIAAALI 877

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            A+ I + + ++ +   L  ++TL       L      G + ++ A+  ++ LIG    + 
Sbjct: 878  AVYIVLGLLYESYIHPLTILSTLPSAGVGALLILMAGGYDLSVIALIGIILLIGIVKKNG 937

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D         +  +     I ++        + T+M A +S LP+ +    G  + 
Sbjct: 938  IMMID--FALTAERSQGMKPEQAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGAGSELR 995

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  M  G++++ + ++F    + L++  
Sbjct: 996  RPLGYAMVGGLILSQALTLFTTPVVYLYLDR 1026


>gi|193213971|ref|YP_001995170.1| preprotein translocase subunit SecD [Chloroherpeton thalassium ATCC
           35110]
 gi|193087448|gb|ACF12723.1| protein-export membrane protein SecD [Chloroherpeton thalassium
           ATCC 35110]
          Length = 647

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 125/489 (25%), Positives = 222/489 (45%), Gaps = 37/489 (7%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
           +      +    + +R+ + + G+    ++    + I +       K+ +   +    + 
Sbjct: 147 ETEATEAVNRAREIIRNRVDQYGVAEPVIQTQGGRRIIVELPGVSDKQRVRKLLKGTAKL 206

Query: 122 VNSKL---------------------------------NVDPKKNLLVTTTEKEISIVLS 148
               +                                      + L+  T   +  ++ +
Sbjct: 207 EFRLVRDKQVAFSVLEDINKYLASLEKATQSDSLAKIAEPISTEKLVAKTDSSDKDLMQA 266

Query: 149 QNNIDQVISHAIEQ---SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
                     A +    +     +  +Q+         LG     +    E +   L +L
Sbjct: 267 AMAASDSAVKAEDLFGGAQADSSKSKEQLRKENPLFSILGVLPNGMTYTTEYERKALEEL 326

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           L             +       F            Y ++ + E++G  +  A A F  + 
Sbjct: 327 LARADVQKRIPSDLDFLIGAKSFATAEDGTKLYYVYPLKKQAELTGGVITEAKATFSSEG 386

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +P V +  D  G R +  VT  NIGK +A+VLD  V +APV+   IP+G + I+G   I
Sbjct: 387 MRPEVTMKMDGEGTRVWARVTGANIGKQIAIVLDKTVYSAPVVQSKIPNGSSVINGIDNI 446

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
             A  L  +L+AG+LP  + I+EER VG  LG+DSI  G  AI+ G  ++ +FM++ Y  
Sbjct: 447 AEAQDLEIVLKAGALPAPVKIIEERTVGPSLGADSIRAGIQAIIWGFAVVAIFMVIYYRG 506

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G +ADF++  NVI  +A+L+   A LTLP IAG+VL IG+AVD+N+L+ ER+REE    
Sbjct: 507 AGFIADFALIFNVIFVIAVLAGFSAALTLPGIAGLVLTIGMAVDANVLIFERVREEISNG 566

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           + V  ++++G+ +A+S I DS+IT L    +L+ FG G ++GFA+T+ +  + S+FTA+ 
Sbjct: 567 KRVRLAVEIGYEKAFSAILDSHITTLGGAFLLYSFGIGPIQGFAVTLMIGTIASLFTAVV 626

Query: 506 IVRAMMIFI 514
           I + ++ ++
Sbjct: 627 ITKVIIDWM 635



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 33/201 (16%), Positives = 77/201 (38%), Gaps = 4/201 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                     +  K   +     I     VGP +  + IR GI  +I     + I++ I 
Sbjct: 444 DNIAEAQDLEIVLKAGALPAPVKIIEERTVGPSLGADSIRAGIQAIIWGFAVVAIFMVIY 503

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++      A   LI ++   +   A F     L  +A ++  IG +V+  V++++R+R+ 
Sbjct: 504 YR-GAGFIADFALIFNVIFVIAVLAGFSAALTLPGIAGLVLTIGMAVDANVLIFERVREE 562

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +         R  ++    +     + + +        +  +G   I  FA+ +  G + 
Sbjct: 563 ISNGKR---VRLAVEIGYEKAFSAILDSHITTLGGAFLLYSFGIGPIQGFAVTLMIGTIA 619

Query: 808 AASSSIFIAAPILLFIYDWRA 828
           +  +++ I   I+ ++ +   
Sbjct: 620 SLFTAVVITKVIIDWMIEQDK 640



 Score = 88.6 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 51/248 (20%), Positives = 92/248 (37%), Gaps = 42/248 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPS------------------AMPKN 42
           M+ N + + L  +   + +   +P         +                     A  + 
Sbjct: 1   MKKNQFRLFLIVLFTALAVWSIIPTIQDYLHTKKLGELSSEEALKYVRENRADIEAAKEK 60

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
           R+ LGLDL+GG H+VLEVD    +    +   ++    ++       + +          
Sbjct: 61  RLKLGLDLQGGMHIVLEVDVLGLIEERARNRDEKFEQIIQSVREQSKTSKS--------- 111

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
                       +T  L     K N+   +            +      ++   + A+ +
Sbjct: 112 -----------LITELLADAFKKENIRMSRYFYDIRDSDADIV----EKLETEATEAVNR 156

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
           + EIIR R+DQ G++E  IQ  G  RI+++LPG  D  R+R+LL  TAK+ F  V     
Sbjct: 157 AREIIRNRVDQYGVAEPVIQTQGGRRIIVELPGVSDKQRVRKLLKGTAKLEFRLVRDKQV 216

Query: 223 KKGFMFGV 230
               +  +
Sbjct: 217 AFSVLEDI 224


>gi|50125306|gb|AAS83530.2| resistance-nodulation-cell division family efflux pump protein SdeE
           [Serratia marcescens subsp. marcescens ATCC 13880]
          Length = 1021

 Score =  162 bits (408), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 73/648 (11%), Positives = 164/648 (25%), Gaps = 38/648 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G +           +   P                     L    
Sbjct: 5   RPVATTLLTLAIAISGAI-----GFRLLPVSPLPQVDFPVI---------SISASLPGAS 50

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               ++ L F   R     A  V   +   
Sbjct: 51  PETMASSVATPLERALGRIAGVNEMTSMSSLGSTRVILQFDLDRDINGAARDVQAAINAA 110

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q   +I  +E    
Sbjct: 111 QSLLPTGMPSRPSYRKVNPSDAPIMI-LTLTSDTYSQGQLYDFASTQLAQKISQTEGVGD 169

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +PS L     +   +       N  +          R        
Sbjct: 170 VSVGGSSLPAVRVELNPSALFNQGVSLDSVRQAIANANVRRPQGAVENPQQRWQIQANDA 229

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++                           +                 +   +  V +  +
Sbjct: 230 LKTA--------------------DAYRPLIIHYNNGSAVRLADVAEVKDSVQDVRNAGM 269

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A        S     +   T++        L+          V +        S +  
Sbjct: 270 TDAKPAIILAISRAPDANIIETVDRIRAELPALQENIPASIQLNVAQDRSPTIRASLAEV 329

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + + AI  GLV++V+F+ +  G+  L+   ++ +++I + A + L G +L   S+  + +
Sbjct: 330 EQSLAIAIGLVILVVFIFLRSGRATLIPAVAVPVSLIGSFAAMYLCGFSLNNLSLMALTI 389

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E I            +  +G      T+   +++ +   + L    G
Sbjct: 390 ATGFVVDDAIVVLENISRHVEAGMKPINAALLGAREVGFTVLSMSVSLVAVFIPLLLMEG 449

Query: 483 GA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R FA+T+ +SI +S+  ++++   M  +++R++  +S          L+     
Sbjct: 450 LPGRLFREFAVTLSVSIGLSLIVSLTLTPMMCAYLLRHQPARSQRRARGFGKMLLALQQG 509

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                    G    +L    +   L               Q        +      S   
Sbjct: 510 YGRSLNWVLGHSRWVLAVFLATVALNVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQA 569

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                +   +    + +      +  G       +   +K        
Sbjct: 570 MRGKLEDFMKIVREDPDVENVTGFTGGSRTNSGSMFISLKPLSVRSDD 617



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 65/169 (38%), Gaps = 11/169 (6%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + ++++I++R      L     + + +  +     L G   N  ++ A+    
Sbjct: 333 LAIAIGLVILVVFIFLR-SGRATLIPAVAVPVSLIGSFAAMYLCGFSLNNLSLMALTIAT 391

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
           G+ V+D +VV + +    +     +   +       E     +  S++     +P+ +  
Sbjct: 392 GFVVDDAIVVLENI---SRHVEAGMKPINAALLGAREVGFTVLSMSVSLVAVFIPLLLME 448

Query: 789 -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD----WRAKNAR 832
              G +   FA+ ++  I ++   S+ +   +  ++         + AR
Sbjct: 449 GLPGRLFREFAVTLSVSIGLSLIVSLTLTPMMCAYLLRHQPARSQRRAR 497



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 97/217 (44%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     V++ +T++   ST++       ++ ++ ++  ++ ++ +   
Sbjct: 798  TISFNLPDGGSLSDATAAVERTMTQLGVPSTVRGAFAGTAQVFQDTLKSQLILILAAIAT 857

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    LFG  F+L A+  ++ LIG    + +
Sbjct: 858  VYIVLGVLYESYIHPLTILSTLPSAGVGALLALELFGAPFSLIALIGIMLLIGIVKKNAI 917

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     IS R+ I ++        + T++AA    LP+ +    G  +  
Sbjct: 918  MMVDFALEAQRNG--GISAREAIFQASLLRFRPIMMTTLAALFGALPLVLTRGDGAELRQ 975

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +A G+V++   +++    + L+    +AK  R
Sbjct: 976  PLGITIAGGLVMSQLLTLYTTPVVYLYFDRLQAKFRR 1012


>gi|83593429|ref|YP_427181.1| acriflavin resistance protein [Rhodospirillum rubrum ATCC 11170]
 gi|83576343|gb|ABC22894.1| Acriflavin resistance protein [Rhodospirillum rubrum ATCC 11170]
          Length = 1037

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/514 (11%), Positives = 140/514 (27%), Gaps = 43/514 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R   +  +L  ++  +G+       + +  +   P                   +     
Sbjct: 9   RRPVFATVLSLLLVVMGIAA-----MTRLAVRELPDIDSAV-----------VSVTTPYT 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + V+  +    +   + +          R+ Q +  + F      +   + V   +
Sbjct: 53  GAAPEIVDTDITEVIENAVAGVSGIRTITSQSRRGQGRTVIEFESGVSMDEAVNDVRDAV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V   L  D ++  +  +      ++             IE +    R  +D++   + 
Sbjct: 113 AKVRGDLPDDIEEPRIAKSDTDSDPVMRLSLTSP--RMTPIELTDFADRYIVDRLATIDG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +    D   +     T   +       N               +   
Sbjct: 171 VAQVDLYGERRQAIRLWLDRRAMAARQVTVQDVEAALRRANVELPAGEIESASRLLTVRA 230

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             L+          +                      +            +   +     
Sbjct: 231 ATLLTSPEAFGSTVIKV--------------------VDGYPLRVRDVARVELGVENDDT 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +            ++Q +              LR          V   +      S 
Sbjct: 271 TVRVEGRDALTMGVLRQSQANTVAISNRIRAEIDRLRPSLPEGMSLEVSSDDALFINRSI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T  +   +V+IV F  +   +  LV   +I + VI T   + LLG ++ L ++  
Sbjct: 331 HEVILTLGLSGLIVIIVNFAFLGSIRATLVPTVTIPVAVIGTFIGILLLGFSINLLTLLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           ++L IGL VD  I+V E I+      +    +   G  +    +  +++T +   V + F
Sbjct: 391 LILSIGLVVDDAIVVLENIQRRIEAGEPKLVAAARGTRQVTFAVVATSLTLIAVFVPISF 450

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G     F   +  ++ ISM  A+++   +
Sbjct: 451 MEGTVGRLFTEFGFVLACAVAISMLVALTLCPPL 484



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 86/247 (34%), Gaps = 7/247 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G   + V+   P+ +  V      ++  D + +    +   +  L+    ++VA +  + 
Sbjct: 241 GSTVIKVVDGYPLRVRDVARVELGVENDDTTVRVEGRDALTMGVLRQSQANTVAISNRIR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIYIWIRFKWYFALG 695
               ++   +P                  I + I+ + +   I +++           L 
Sbjct: 301 AEIDRLRPSLPEGMSLEVSSDDALFINRSIHEVILTLGLSGLIVIIVNFAFLGSIRATLV 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T     L G   NL  + A++  IG  V+D +VV + +    +      
Sbjct: 361 PTVTIPVAVIGTFIGILLLGFSINLLTLLALILSIGLVVDDAIVVLENI---QRRIEAGE 417

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSS 812
                  +   +     V TS+      +P++   G+V      F   +A  + ++   +
Sbjct: 418 PKLVAAARGTRQVTFAVVATSLTLIAVFVPISFMEGTVGRLFTEFGFVLACAVAISMLVA 477

Query: 813 IFIAAPI 819
           + +  P+
Sbjct: 478 LTLCPPL 484



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 69/154 (44%), Gaps = 8/154 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +F+ +   L  + ++ L ++  L      G   N+ +   ++ LIG 
Sbjct: 857  LMALVIVYLVLAAQFESFLHPLIIMLSVPLAVSGALLSLWATGNSINVYSQIGIVLLIGL 916

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + +++ +      +L     S R+ I ++ +  L   + T +   +  +P+A     
Sbjct: 917  TAKNGILIVEFAN---QLRDEGRSVREAILEAASLRLRPILMTVICTILGAVPLAWSSGA 973

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            G     +  I +  G+ +A+  ++F+  P+L  +
Sbjct: 974  GAESREAIGIVVIGGLGLASLLTLFV-TPVLYDL 1006


>gi|182439812|ref|YP_001827531.1| preprotein translocase subunit SecD [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178468328|dbj|BAG22848.1| putative protein-export membrane protein SecD [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 555

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 106/536 (19%), Positives = 206/536 (38%), Gaps = 35/536 (6%)

Query: 45  SLGLDLRGGSHLVLEVD-----EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KI 98
            LG+DL GG+ + LE        +      +      +   +   G+    ++   +  I
Sbjct: 10  RLGIDLAGGTSITLEAQNQPGKPNAINQTNMDTAVGIIERRVNGLGVSEAEVQTQGSKNI 69

Query: 99  TLSFADSRFKENIADKVTLFLQG-------VNSKLNV------------DPKKNLLVTTT 139
            ++       +   ++V    Q        V +                   K      +
Sbjct: 70  IVNIPKGTNSKQAQEQVGTTAQLYFRPVLTVQASGPEPTPSGSATPSGSATPKPGESAES 129

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +     +  +     + A  Q   +            ++ +   S       P +   
Sbjct: 130 GDKPKGEEATGSEATPSASATTQGRAVTGALTKDDPTPGASDKPAPSDSPEATPPVDPAT 189

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY--LVEDKVEISGIHLNGA 257
           ++L++           +             +     +    Y   +    E+SG  ++ A
Sbjct: 190 AKLQEEFAKLDCTDPKQRTDAGKNAKATDSIVACGSNVPGSYEKYILGPAEVSGSDVDDA 249

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP---- 313
               + +T + +V + F   GA++F  +T     +   +     VL   V++        
Sbjct: 250 KGAIEQQTGEWIVSMEFTSAGAKKFQTITGRLAQQQPPMNQFAIVLDGEVVSAPSVRTAL 309

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
           S  AQISG+FT ++A  L  +L  G+LP+    V    V A LGS+ +  G  A   GL 
Sbjct: 310 SKNAQISGSFTQQSAEDLGNILSYGALPLTFKEVSVTTVTAALGSEQLKGGLIAGAIGLA 369

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVD 429
           L+V++++V Y     +A  S+ ++ +LT  ++SLLG      L LP++ G ++ IG+  D
Sbjct: 370 LVVVYLVVYYRGLAFIALLSLLVSGVLTYTIMSLLGPAIGFALNLPAVCGAIVAIGITAD 429

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           S I+  ER+R+E R+ +++  +++  + RA  TI  S+  + +A  VLF    G V+GFA
Sbjct: 430 SFIVYFERVRDEIREGRTLRPAIERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFA 489

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
            T+GL+ L+ +       + +M  + R K               +     ++  R 
Sbjct: 490 FTLGLTTLLDVVVVFFFTKPLMTLMGRTKFFSRGGPWSGLDPKRLGAQPPLRRSRR 545



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 48/125 (38%), Gaps = 7/125 (5%)

Query: 707 TLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           T    +L G       NL AV   +  IG + +  +V ++R+R  ++      + R  I+
Sbjct: 397 TYTIMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIRE---GRTLRPAIE 453

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++        + +   +F++   + +     +  FA  +    ++      F   P++  
Sbjct: 454 RAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLLDVVVVFFFTKPLMTL 513

Query: 823 IYDWR 827
           +   +
Sbjct: 514 MGRTK 518


>gi|156973736|ref|YP_001444643.1| hypothetical protein VIBHAR_01445 [Vibrio harveyi ATCC BAA-1116]
 gi|156525330|gb|ABU70416.1| hypothetical protein VIBHAR_01445 [Vibrio harveyi ATCC BAA-1116]
          Length = 1037

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/651 (9%), Positives = 173/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVAALVLSMLLCVFGFVS-----FTKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +    R  +D+  +     
Sbjct: 115 AQRSLPDEADDPVVFKNNGSGEASLYINLSSSE--MDRTQLTDYAERVLMDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SIDLSGGLYKVMYVKLKPDLMAGRSVTASDITAALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +          +     ++           
Sbjct: 219 -----VRNDSTVMSVRTARTYNTPEDFQYLVVKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     ++       ++          ++         S   
Sbjct: 274 KSDGVVNISLGVVPQSDANPLEVAQSVRSEVDKIQKFLPDGTRLAIDYDATVFIERSIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + +S++ S   A+++   +   I++     +            L   
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNRFNQAVDKLFAKLEAG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    +       ++ +         + +   +  +    +     R  D +    
Sbjct: 514 YRKALRGALKVRWAAPLVIVACMGGSYGLMNQVPTQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MSANMDIVEDRLMPLLGQGFLKSFSIQTPAFGGQAGDQTGFVIMILEDWNE 624



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARTYNTPEDFQYLVVKRASDNTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L   P        V + V+ ++ +I           +    +  + R        +
Sbjct: 279 VNISLGVVPQSDANPLEVAQSVRSEVDKIQKFLPDGTRLAIDYDATVFIERSIDEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNR 498



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        +     N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMFTVPMGVFGGFLGLVVMSQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    I F   I  +    L   + T+       +P+ +    G     +    + FG+
Sbjct: 931  QLRDRGIEFEKAITDAAARRLRPIMMTAFTTLAGAIPLIMSTGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A   ++F+   +   I        
Sbjct: 991  GFATLVTLFVIPAMYRLISAKTRSPG 1016


>gi|170079222|ref|YP_001735860.1| AcrB/AcrD/AcrF family protein [Synechococcus sp. PCC 7002]
 gi|169886891|gb|ACB00605.1| AcrB/AcrD/AcrF family protein [Synechococcus sp. PCC 7002]
          Length = 1012

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 62/648 (9%), Positives = 174/648 (26%), Gaps = 44/648 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N    ++ + ++  +G+   L        +D  P+                  +     
Sbjct: 11  KNPVPTLVAFMIMTIVGIYSFL-----NLGIDNTPNIDISAVT---------VSVSQPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + L        ++    ++  ++F      +   + V   +  
Sbjct: 57  APEEIETEITKKIEDSVASLANIDQITSTVTDGNSQTVVNFELGTDTDQATNDVRNAIAQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D    ++        +++    +         E S  I R+   ++   E   
Sbjct: 117 IRSSLPQDITDPIVQKLDFAGGAVMTYALSS--GERTVEELSDLIDRRIGRELTNVEGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++  + DP  L+ L  T  +++      N ++ G    +     +     
Sbjct: 175 EIQRLGGVDREIRVDLDPDLLQSLGITATQVNDQIAQFNLNRPGGRLELGGNEQNVRTLG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   E+    +                                   +           
Sbjct: 235 SAESIQELQQYPITLP--------------------NGDLVSLENLGRVEDSFREPRVAA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           +     +      A L+          +          S   
Sbjct: 275 TLNNEPVVAFSVLRSPGSTVVGVDQGIRKAIAELQTTLPEDLRFDLIFTRATEIQASYDG 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L +I +   +   +  L+   ++ L+++ T  ++  L  TL   ++  + 
Sbjct: 335 TIMALWAGCILTVITVGFFLKDWRATLITAAALPLSIVPTFFVMQALDYTLNGMTLLALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG  VD  I + E I +  +  +  F +   G       +  +  T +   + + F G
Sbjct: 395 LAIGNLVDDAICMIENIDQHLQMGKRPFQAAIDGAREIGLAVVATTATIVAVFLPVAFMG 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +S + S   A ++   +  ++        +      +       +
Sbjct: 455 GVPGQFFQPFGVTVAVSTMFSTLVATTMTPMLSAYL----LKSKLGAFNGQKQPGFYRNL 510

Query: 539 AIQFMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               +R R   + ++   F      + F     +     G   +         L+     
Sbjct: 511 LGWALRHRLTTLLVALAFFIGSLQLIPFIPTGLFSSSDTGISTIAFDLPPGATLADSEQV 570

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +  +     +             +           +   + + +  + 
Sbjct: 571 MTEVSDRLQANPAVSSVLATATNVNSGTIYVNLVPQAERVSQAEFEQT 618



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 76/254 (29%), Gaps = 7/254 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + +     V L  +    +S +   ++    +        L+      V   + +  
Sbjct: 244 QYPITLPNGDLVSLENLGRVEDSFREPRVAATLNNEPVVAFSVLRSPGSTVVGVDQGIRK 303

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
              ++   +P     +         +      I+ +    I  +I +    K W   L  
Sbjct: 304 AIAELQTTLPEDLRFDLIFTRATEIQASYDGTIMALWAGCILTVITVGFFLKDWRATLIT 363

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L I  T           N   + A+   IG  V+D + + + + +++++      
Sbjct: 364 AAALPLSIVPTFFVMQALDYTLNGMTLLALALAIGNLVDDAICMIENIDQHLQMGKR--- 420

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
                     E     V T+       LP+A  GG        F + +A   + +   + 
Sbjct: 421 PFQAAIDGAREIGLAVVATTATIVAVFLPVAFMGGVPGQFFQPFGVTVAVSTMFSTLVAT 480

Query: 814 FIAAPILLFIYDWR 827
            +   +  ++   +
Sbjct: 481 TMTPMLSAYLLKSK 494



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 70/173 (40%), Gaps = 7/173 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
             +I R++  + +  +  + + +  I + +   + +  G +T L L I   L    +   
Sbjct: 827 DAEIMRDIFSRFLTALGAAVLCIYAILVLLYNNFLYPFGILTALPLSIGGALLGLMITQK 886

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           E  L A+  ++ L+G    + +++ D     +       + +  + ++    L     TS
Sbjct: 887 ELGLFALIGIVLLMGLVTKNAILLVDF---TLSGLREGKTLKKSLVEAGVSRLRPICMTS 943

Query: 777 MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++    +LP+A+     G+     AI +  G   +   ++ +   I  +IY +
Sbjct: 944 LSTIAGMLPIALELGADGATRSPMAIAVIGGFSTSTVLTLIVVPVIFTYIYRF 996


>gi|311746250|ref|ZP_07720035.1| multidrug efflux pump BpeF [Algoriphagus sp. PR1]
 gi|311302486|gb|EAZ80759.2| multidrug efflux pump BpeF [Algoriphagus sp. PR1]
          Length = 1063

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/522 (12%), Positives = 152/522 (29%), Gaps = 43/522 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  ++   G        +    ++RFP   P               + ++V 
Sbjct: 7   QRPVLALVISVLLVLAGAAS-----MRMLPVERFPEIAPP-------------SVSVQVY 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVT 116
                   +       L   +   E +   +       + + T+ F         A ++ 
Sbjct: 49  YPGANAETVANSVLLPLEEAINGAENMSYVNSTATNSGRGRSTVYFEPGTDPNVAAVEIQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V  ++  + ++  +V     + S++      +         +     +   ++  
Sbjct: 109 NRISKVMEQIPAEVREAGIVVLKRLKGSLMTINIYSENGDYDETFLNAYTRMKIRRELKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    +P +L     T  ++       +       FG       
Sbjct: 169 VSGIAEASILRSRDYAMRIWLNPEKLALYGLTPREVLNQVRDQSFEAAPGRFGENSTETF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                            +    +    +  +    +   E    +        +    + 
Sbjct: 229 ----------------EIVLKHSGRFSEAEEYENIVIKSEEDGSQLRLKDVARLEFGASN 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L            +   +     +    +               +         
Sbjct: 273 YASDNKLDGKSAVTIDIVQQQGANAVEIDKAVRKVLEDQAKVFPEGIHYKITYSVRDQID 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    + T      LV +V+F+ +   +  ++   SI +++I T   L ++GAT+ + S
Sbjct: 333 ESMHHVQQTLIEAFVLVFLVVFIFLQDFRATIITAISIPVSLIGTFFFLQIIGATMNVLS 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  IVL IG+ VD  I+V E I E+ + +   V  +++   S     I    I      +
Sbjct: 393 MFSIVLAIGIVVDDAIVVIEAIYEKIHDQGMQVLDAVNAAMSEITGAIISITIVIAAVFL 452

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              F  G      + FA T+  ++LIS   A+++V  +   I
Sbjct: 453 PAGFLDGPVGVFYKEFAFTIIFAVLISAINALTLVPVLSALI 494



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 91/249 (36%), Gaps = 9/249 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + + +        ++              +   +    V +            + + 
Sbjct: 244 YENIVIKSEEDGSQLRLKDVARLEFGASNYASDNKLDGKSAVTIDIVQQQGANAVEIDKA 303

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF-KWYFA 693
           V+K + +   +        +   +  ++          +I + + + + ++I    +   
Sbjct: 304 VRKVLEDQAKVFPEGIHYKITYSVRDQIDESMHHVQQTLIEAFVLVFLVVFIFLQDFRAT 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +    ++ + +  T  F  + G   N+ ++ +++  IG  V+D +VV + + +  K++  
Sbjct: 364 IITAISIPVSLIGTFFFLQIIGATMNVLSMFSIVLAIGIVVDDAIVVIEAIYE--KIHDQ 421

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +   D ++ +++E  G  +  ++      LP     G V      FA  + F ++++A 
Sbjct: 422 GMQVLDAVNAAMSEITGAIISITIVIAAVFLPAGFLDGPVGVFYKEFAFTIIFAVLISAI 481

Query: 811 SSIFIAAPI 819
           +++ +   +
Sbjct: 482 NALTLVPVL 490



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 55/152 (36%), Gaps = 6/152 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
             I       ++  +  I +L   I        L GI+ N+     ++ LIG    + +++
Sbjct: 901  FILAAQYESFWLPMAVILSLPAGILGIFASINLVGIDNNIYVQVGLIMLIGLLAKNAILI 960

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSF 797
             + +    +     +   + + ++    L   + TS A    ++P+    GS      S 
Sbjct: 961  VEFV---AQKRRAGLPVFEAVIEACQLRLRPIMMTSFAFTAGLVPLMFSVGSSAEGTKSV 1017

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +I  A G++   S  +     +     + + +
Sbjct: 1018 SIGTAGGMIFGISLGLIFIPVLSYVFQELQDR 1049


>gi|6647799|sp|O26074|SECD_HELPY RecName: Full=Protein-export membrane protein secD
 gi|2314730|gb|AAD08588.1| protein-export membrane protein (secD) [Helicobacter pylori 26695]
          Length = 503

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 151/502 (30%), Positives = 261/502 (51%), Gaps = 21/502 (4%)

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
           +I+LGLDLRGG +++L V  D+ +       +  L    KK+ I +  ++     I+   
Sbjct: 11  KITLGLDLRGGLNMLLGVQTDEALKNKYLSLASALEYNAKKQNILLKDIKSNLEGISFEL 70

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
            D    + +   +          L +       +       S+ L+    +++  + I Q
Sbjct: 71  LDEDEAKKLDALL----------LELQGHSQFEIKKEAGFYSVNLTPLEQEELRKNTILQ 120

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP 219
            + IIR R+DQ G++E  + + G   I +QLPG +      R + L+  +A +    V  
Sbjct: 121 VIGIIRNRLDQFGLAEPVVIQQGKEEISVQLPGIKTLEEERRAKDLISRSAHLQMMAVDE 180

Query: 220 --------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                       +    G   L D +    ++   + I    +         + ++PVV 
Sbjct: 181 EHNKDAMKMTDLEAQKLGSVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVS 240

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
            + D  GA+ F + +  N+GK +A+VLD +V +APVI + I  G  QISGNF++  A  L
Sbjct: 241 FTLDAQGAKIFGDFSGANVGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDL 300

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A  LR+G++   + ++E+R +G  LG DS+     A+V G +L++ FM++ Y   G++A 
Sbjct: 301 AIALRSGAMSAPIQVLEKRIIGPSLGKDSVKTSIIALVGGFILVMGFMVLYYSMAGVIAC 360

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ +N+ L +A++++ GATLTLP +AGIVL +G+AVD+NI++NERIRE  R+N+ +  +
Sbjct: 361 LALVVNLFLIVAVMAIFGATLTLPGMAGIVLTVGIAVDANIIINERIREVLRENEGIAKA 420

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           + +G+  A   IFDSNIT+LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + + 
Sbjct: 421 IHLGYINASRAIFDSNITSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIY 480

Query: 512 IFIIRYKKMKSIDINPLSRFFL 533
             ++                  
Sbjct: 481 QALLPKLTQTKSLYFWFGVNKR 502



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ ++  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 322 GPSLGKDSVKTSIIALVGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 380

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++           I             +++
Sbjct: 381 LTLPGMAGIVLTVGIAVDANIIINERIREVLRENE---GIAKAIHLGYINASRAIFDSNI 437

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 438 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 474


>gi|207739525|ref|YP_002257918.1| drug efflux pump transmembrane protein [Ralstonia solanacearum
           IPO1609]
 gi|206592905|emb|CAQ59811.1| putative drug efflux pump transmembrane protein [Ralstonia
           solanacearum IPO1609]
          Length = 740

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/537 (11%), Positives = 142/537 (26%), Gaps = 38/537 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATTLLMVAILLSGLVAYRMLPLSALPEVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F  S   +    +V   +   
Sbjct: 56  PDVMTSSITAPLERQFGQMPGLKQMTSSSSGGASVITLQFDLSLSLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +      + +L+   I        +    +  +   ++        
Sbjct: 116 GNLLPTDLPMPPIYSKVNPADAPILT-LAITSKTLPLPKLEDIVDTRVAQKLSQLPGIGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  +   +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRIQANTQALAALGLSIDDIRTAIGNANVNGAKGSFDGPLRASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                       +                 I            
Sbjct: 235 LRSAAE--------------------YSTMIVAYKNGAPIRLTDVAQIIDGAENSKLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A          +   +    +  A  L   L+          V          S +  
Sbjct: 275 ANATPAIILNVQRQPGANVIDVVNRAKALLPQLKDTLPATIDVAVLTDRTTTIRASVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFELMLSVALVVMVIFLFLRNVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I            +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYIEDGDPPMEAALKGAKQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   R FAIT+ +SILIS   ++++   M   ++R+           +      +
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLRHIPEPEQTRFYHAAGQFFDN 511



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 86/260 (33%), Gaps = 12/260 (4%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
           T   N  +         ++A +      +    + +   + S           + L  Q 
Sbjct: 228 TIDANDQLRSAAEYSTMIVAYKNGAPIRLTDVAQIIDGAENSKLAAWANATPAIILNVQR 287

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIAM 680
                   V+   K  + ++           V    +  +          + + ++ + M
Sbjct: 288 QPGANVIDVVNRAKALLPQLKDTLPATIDVAVLTDRTTTIRASVADVQFELMLSVALVVM 347

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           +I++++R      +     + L +  T G   L G   N   + A+    G+ V+D +V+
Sbjct: 348 VIFLFLR-NVPATVIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVM 406

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF 797
            + +    +         +   K   +     +  + +    ++P+   G   G +   F
Sbjct: 407 IENI---ARYIEDGDPPMEAALKGAKQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFREF 463

Query: 798 AIPMAFGIVVAASSSIFIAA 817
           AI +A  I+++A  S+ +  
Sbjct: 464 AITLAVSILISAVVSLTLTP 483


>gi|300726835|ref|ZP_07060265.1| multidrug resistance protein, AcrB/AcrD family [Prevotella bryantii
           B14]
 gi|299775948|gb|EFI72528.1| multidrug resistance protein, AcrB/AcrD family [Prevotella bryantii
           B14]
          Length = 1093

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 60/530 (11%), Positives = 152/530 (28%), Gaps = 43/530 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G +  +        ++++P   P               +V++  
Sbjct: 8   KRPVLSTVISIFFVLLGTIGLI-----SLPIEQYPDIAPPT-------------IVVQTT 49

Query: 62  EDDFVNGF-LQMYSDELRSFLKKEG-IGVFSMRQ---IQNKITLSFADSRFKENIADKVT 116
                    +      L   +     +   +          IT+ F         A  V 
Sbjct: 50  YTGADAKTVMNSVITPLEESINGVEHMTYMTSTATNAGSAMITVYFEQGSDPNMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    + L  +  +  +  +  +  ++++     +         +       +  I  
Sbjct: 110 NRVSQAQALLPSEVTQVGVTVSKRQSSNVIMYSLTTEDGRYDGKFLTNYNNINIVPLIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P ++++     + ++      N       FG +     
Sbjct: 170 ISGVGDVQTPSTQNYSMRIWLKPDKMKEYGLIPSDITAALAEQNIEAAPGSFGEQ---SD 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y +  K  +S                +    I   +      +      I      
Sbjct: 227 MAYEYTLRYKGRLS-------------TVPEYENIILNSKTTGETLYLKDVAKIELGGLQ 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +    A  +            A  +    P      E+       
Sbjct: 274 YNVFLKNNGQPAVLGMVQQIAGSNATQIANDVKAALADAQKSMPPGMEVTFEQDVTEFLF 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I  GLV +V+++ +   +  L+   ++ + ++ T   L + G ++ L  
Sbjct: 334 ASIEEVVMTLFITLGLVFLVVYIFLQDFRSTLIPMIAVPVALMGTFLFLWIFGFSINLLV 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVF--CSLDMGFSRAYSTIFDSNITALIAT 474
           ++ ++L I + VD  I+V E +  +  +        S+D     + + I  + + + +  
Sbjct: 394 LSAMLLAIAIVVDDAIVVVEAVHAKLDQGYQSALTASIDAMNEISGAIISITLVMSAVFV 453

Query: 475 VVLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            V F  G      R F +TM +SI+IS   A+++  A+   +++      
Sbjct: 454 PVSFISGTSGTFYREFGVTMAISIVISAINALTLSPALCAILLKPHANDK 503



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/377 (9%), Positives = 117/377 (31%), Gaps = 18/377 (4%)

Query: 468  ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
               ++A       G     G  +T+       +    +I ++ +  + +  ++K+     
Sbjct: 680  DAQILAFGPPMIPGFSMSNGVTMTLQDKTGGDLNKFFNITKSYLAELNKRPEIKTAMTTY 739

Query: 528  LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-----YGIDFKGGIQLG 582
             + +      + +   +         +         L+    N     + +  +G ++  
Sbjct: 740  NANYPQYMVDVDVAKCKQAGTSPSAVLSTMQGYYGGLYASNFNAYGKLFRVMIQGDVESR 799

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +  +   ++ V  ++  S      + +   G  N      +   +     +      + +
Sbjct: 800  MRPDGLSNIYVRTASGMSPVSEFATLRRVYGPSNISRFNLFTSINLNITPQDGYSTGQAL 859

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKG----IVGVIISAIAMLIYIWI---RFKWYFALG 695
                 ++        G + S     +       G+I +   + +Y+ +      +   L 
Sbjct: 860  QACEEVAADNLPTGYGYEYSGLTRSEAESSNTTGLIFALCLLFVYLILSAQYESYILPLS 919

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             I ++   +     F  +F    ++    +++ LIG    + +++     +      T +
Sbjct: 920  VILSIPFGLAGAFAFTQIFQHTNDIYMQISLIMLIGLLAKNAILIVQFALE---RRRTGM 976

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSS 812
            + +          L   + TS+A  + +LP+    G       +       G+++  +  
Sbjct: 977  AIKYSAILGAAARLRPILMTSLAMIVGLLPLMFASGVGKYGNQTLGAAAVGGMLIGTAVQ 1036

Query: 813  IFIAAPILLFIYDWRAK 829
            +F+   +       + K
Sbjct: 1037 LFVVPSLFAIFQWLQEK 1053



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 93/257 (36%), Gaps = 13/257 (5%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + + +    +   ++   +    G              V    Q       T++   
Sbjct: 245 YENIILNSKTTGETLYLKDVAKIELGGLQYNVFLKNNGQPAVLGMVQQIAGSNATQIAND 304

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
           VK  + +                ++  L   I + ++ + I+   + + ++I    +   
Sbjct: 305 VKAALADAQKSMPPGMEVTFEQDVTEFLFASIEEVVMTLFITLGLVFLVVYIFLQDFRST 364

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  +  + + +  T  F  +FG   NL  ++A+L  I   V+D +VV + +   +     
Sbjct: 365 LIPMIAVPVALMGTFLFLWIFGFSINLLVLSAMLLAIAIVVDDAIVVVEAVHAKLDQGYQ 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVL---PMAVWG--GSVIGSFAIPMAFGIVVA 808
           S     +   ++NE  G  +  S+   +S +      + G  G+    F + MA  IV++
Sbjct: 425 SALTASI--DAMNEISGAII--SITLVMSAVFVPVSFISGTSGTFYREFGVTMAISIVIS 480

Query: 809 ASSSIFIAAPILLFIYD 825
           A +++ ++  +   +  
Sbjct: 481 AINALTLSPALCAILLK 497


>gi|300741591|ref|ZP_07071612.1| protein-export membrane protein SecF [Rothia dentocariosa M567]
 gi|311113685|ref|YP_003984907.1| protein-export membrane protein SecF [Rothia dentocariosa ATCC
           17931]
 gi|300380776|gb|EFJ77338.1| protein-export membrane protein SecF [Rothia dentocariosa M567]
 gi|310945179|gb|ADP41473.1| protein-export membrane protein SecF [Rothia dentocariosa ATCC
           17931]
          Length = 365

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/294 (22%), Positives = 129/294 (43%), Gaps = 12/294 (4%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R W +   +L ++     L + G N GIDF+GG +  V      ++S   + ++    
Sbjct: 29  KRRLWLLLAVLLMAVSVAIPLVSGGFNLGIDFRGGSEFVVSRTTHTEVSEGENAVKEHAP 88

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                +      N            ++    L + K              +  VGP    
Sbjct: 89  SASDVRV----TNIAPGTIRAQMSKLSDNETLSVKKALQDAYGVSENDVTSSYVGPTWGE 144

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           ++ R+   G+I+  I  LI +   F+ W  +L +I  L+  +  T+G +A  G E   +A
Sbjct: 145 DVTRQAFFGLIVFVILALIGMAFYFRTWKMSLASIAGLLFTVVVTVGIYAALGFEITPSA 204

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLY--TTSISFRDLIDKSINETLGRSVYTSMAAF 780
           +   LT++ YS+ D VVV+D++R+N +        +F + I+ ++N+TL RS+ T++   
Sbjct: 205 IIGFLTILSYSLYDSVVVFDKIRENTEDAFSRKDRTFAEDINLAVNQTLVRSINTAIVGV 264

Query: 781 ISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + V  +      + G   +   ++ +  GI+V    ++F++AP+   +     K
Sbjct: 265 LPVGSILFIGAFMLGAGTLQDLSLSLFVGILVGMVGTLFVSAPLYGTLRLGERK 318


>gi|260435955|ref|ZP_05789925.1| protein-export membrane protein SecF [Synechococcus sp. WH 8109]
 gi|260413829|gb|EEX07125.1| protein-export membrane protein SecF [Synechococcus sp. WH 8109]
          Length = 329

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 98/180 (54%), Gaps = 5/180 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           Q+ + +GP + ++L+R  +  ++++   +  YI  R+   +A  A+  L  D+    G F
Sbjct: 150 QSVDTIGPSLGKQLLRSSLFSLLVAFSGIATYISFRYDRRYAFLALVALAHDVAIVCGVF 209

Query: 712 ALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A  G    +E +     ++LT+ GYSVND VVV+DR+R+        +     +D++++ 
Sbjct: 210 AWLGVVLQLEVDSLFAVSLLTIAGYSVNDTVVVFDRIRE-RSKDAADLPLSVQVDQAVSA 268

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++YTS    + +L +  +GG+ +  FAI +A G+VV + SSI +A  +L      R
Sbjct: 269 TLTRTLYTSGTTLLPLLALVFFGGATLYWFAIALALGVVVGSWSSIALAPSLLTLWDRSR 328


>gi|295700437|ref|YP_003608330.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
 gi|295439650|gb|ADG18819.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
          Length = 1046

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/550 (13%), Positives = 157/550 (28%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +  +GL+      +       +P+                         
Sbjct: 10  RPVATLLLMIALVLVGLIAMRVLPVSSLPNVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +              + ITL F  S   +     V   +   
Sbjct: 56  PTVMATTVTAPLEVQLGEIPGLQQMTSYSSDGASVITLQFDLSLNLDIAEQNVQQAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NS L                   +L+   +        +       +   +I        
Sbjct: 116 NSYLPSGLPAPPTYAKVNPADQPILT-LAVTSKSMSLTQLEDVANNRLGTKISEVSGVGV 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   +  +  E DP +L         +       N S+    F      D     Y 
Sbjct: 175 VTTSGGNVPAIRVEADPHKLAAYGLNIDDLRTLLSYVNVSQPKGNF------DGPDLDYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I+                K  +D           +      + +    V  G  
Sbjct: 229 INGNDQIT--------------DPKDYLDTVIAYQNGSPVYMRDVARVSQAAQDVERGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T+     +   L +         V   + G    S +  
Sbjct: 275 YNGSPAIVLNVQRQPGANVIQTVNQIMKVLPQLESTLPAGMKVTVVSDSTGVIRASVADA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   LV+ V+F+ +      ++   S+ +++I TLA++  L  ++   S+  +++
Sbjct: 335 AFELILAIVLVVAVIFVFLRNVPATVIPSISVPVSLIGTLAVMYQLNYSIDNLSLMALII 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD +I++ E I     +  S   +   G  +   TI    I+ +   + L F GG
Sbjct: 395 ATGFVVDDSIVMIENIVRYLEEGMSPLEAALEGAGQIGFTILSLTISLIAVLIPLLFMGG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              R    FA+T+ ++I+IS   ++++V  +   ++R +  +           L    +A
Sbjct: 455 VIGRLFSEFAVTLAVTIVISAVVSLTVVPMLCARMLRAQAERHPSRFERISERLFDKTLA 514

Query: 540 IQFMRARFWG 549
                 R+  
Sbjct: 515 AYERGLRWVL 524



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 88/252 (34%), Gaps = 7/252 (2%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                    +      PV +  V    ++ Q  +            L   +    + +  
Sbjct: 237 DPKDYLDTVIAYQNGSPVYMRDVARVSQAAQDVERGAWYNGSPAIVLNVQRQPGANVIQT 296

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
              +  V  ++   +P             + R  +      +I++ + ++  I++  +  
Sbjct: 297 VNQIMKVLPQLESTLPAGMKVTVVSDSTGVIRASVADAAFELILAIVLVVAVIFVFLRNV 356

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              +    ++ + +  TL          +  ++ A++   G+ V+D +V+ + +   ++ 
Sbjct: 357 PATVIPSISVPVSLIGTLAVMYQLNYSIDNLSLMALIIATGFVVDDSIVMIENI---VRY 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
               +S  +   +   +     +  +++    ++P+   GG +      FA+ +A  IV+
Sbjct: 414 LEEGMSPLEAALEGAGQIGFTILSLTISLIAVLIPLLFMGGVIGRLFSEFAVTLAVTIVI 473

Query: 808 AASSSIFIAAPI 819
           +A  S+ +   +
Sbjct: 474 SAVVSLTVVPML 485



 Score = 45.8 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 85/218 (38%), Gaps = 6/218 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + +      + +  ++ + +    I    +I ++         + +   +  +I + +
Sbjct: 809  VTVSFNLAKGASLSTAVKDIHQAEQAIDLPPSITSSLQGATAAFEDSLSSEVYLLIAALV 868

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            A+ I + + ++ +   +  ++TL       L    L G++ ++  +  ++ LIG    + 
Sbjct: 869  AVYIVLGVLYESFIHPVTILSTLPSAGIGALLSLMLAGMDLDVIGIIGIVLLIGIVKKNA 928

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D             + R+ I ++        + T++AA +  LPM +    G  + 
Sbjct: 929  IMMVDFALD--AERNHGKAPREAIFEASLLRFRPILMTTLAAMLGALPMLLGTGTGSELR 986

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                + +  G+ ++   ++F    I LF      +  R
Sbjct: 987  RPLGLAIIGGLTLSQVLTLFTTPVIYLFFDRMATRVNR 1024


>gi|332535606|ref|ZP_08411374.1| protein-export membrane protein SecD [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332034990|gb|EGI71511.1| protein-export membrane protein SecD [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 612

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 148/506 (29%), Positives = 250/506 (49%), Gaps = 39/506 (7%)

Query: 36  PSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
           P+ +     + I LGLDL GG   VL+VD D  V+  L     + +S + K+       +
Sbjct: 119 PTWLQDFGLSPIKLGLDLNGGVLFVLDVDLDKAVDEQLVSAYQQAKSIIIKQNAHGVKAQ 178

Query: 93  QIQNKITLS-FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS---IVLS 148
           Q Q+   ++   ++             L  V  +L        +VT     +       S
Sbjct: 179 QTQHGFEINALPNATD----------KLTPVIKELQSRFANLAVVTGNNGSVKTAKFSYS 228

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
           +          + Q++  +R RI+++GI+E+  QR G HRI I+LPG QDP+  ++++G 
Sbjct: 229 EQGRSAFDKEVMGQTLTTLRSRIEELGITEAVTQRQGKHRIRIELPGVQDPTEAKRIIGA 288

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           TA + F+++           G +      G    ++     +G H+N           KP
Sbjct: 289 TASLGFYQLKE--------IGGQTFNMQSGGTIKLDPVPIFTGDHINN-ANIGRDDWGKP 339

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPSGK 316
           +V +S D  G       ++ NIGKP+A V       A                    S +
Sbjct: 340 LVQLSLDGQGGDAMSAFSKANIGKPMATVYSEYSQNAKGEVVKKSEVINVANIAQHLSSR 399

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
             I+   + + A  LA +LRAGSL   + IV E+ +G  LG ++I  G  A++ G+ + +
Sbjct: 400 FSITNMKSQQAAADLALLLRAGSLTAPVTIVHEQTIGPSLGQENISNGLAALMLGMGITL 459

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVN 435
            FM + Y + GL+A+ ++ LN+   + L+SLL    LTLP IAG+VL IG+AVD+N+++ 
Sbjct: 460 AFMALWYRRLGLIANVALILNLTSLVGLMSLLPGVVLTLPGIAGLVLTIGMAVDTNVIIF 519

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERI+EE R+ ++ + ++  G+ +A +TIFD+NIT +I  ++L+  G G V+GFAIT+ L 
Sbjct: 520 ERIKEERRQGRAPYQAIQEGYKQAGNTIFDANITTMITALILYGIGYGPVKGFAITLALG 579

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMK 521
           +L S+FT + + + +   +      K
Sbjct: 580 LLTSVFTGVYVSKILSQTLYLKMGKK 605



 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 97/241 (40%), Gaps = 5/241 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    N +   +      N       L            Q      +  +   +    TI
Sbjct: 370 SEYSQNAKGEVVKKSEVINVANIAQHLSSRFSITNMKSQQAAADLALLLRAGSLTAPVTI 429

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            + + +GP + +E I  G+  +++     L ++ + ++    L A   LIL++T  +G  
Sbjct: 430 VHEQTIGPSLGQENISNGLAALMLGMGITLAFMALWYR-RLGLIANVALILNLTSLVGLM 488

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           +L  G+   L  +A ++  IG +V+  V++++R+++  +      +    I +   +   
Sbjct: 489 SLLPGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERRQ---GRAPYQAIQEGYKQAGN 545

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                ++   I+ L +   G   +  FAI +A G++ +  + ++++  +   +Y    K 
Sbjct: 546 TIFDANITTMITALILYGIGYGPVKGFAITLALGLLTSVFTGVYVSKILSQTLYLKMGKK 605

Query: 831 A 831
           A
Sbjct: 606 A 606


>gi|119385446|ref|YP_916502.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Paracoccus
           denitrificans PD1222]
 gi|119375213|gb|ABL70806.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Paracoccus denitrificans PD1222]
          Length = 1032

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/551 (11%), Positives = 155/551 (28%), Gaps = 36/551 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              +  +L  +   IG    +        + ++P   P               +      
Sbjct: 8   RPVFAWVLAIVTMLIGTWSLI-----GLPVSQYPDIAPTT-----------IRITANYSG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    ++  + L      V S    ++ I L+F DS    +  ++V   ++
Sbjct: 52  ATARAVQNSVTTPIEDALTGLDGLLYTVSSASTGRSVIELTFDDSVEPVDALNEVQSKVR 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L    + + +  T      +++            IE    + +     +  +E  
Sbjct: 112 SVESRLPTPVQNDGVSVTRSSSSILMVGSLVSTTGQHSTIELGNLLEQVVEGPVKRTEGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP RL Q   T   ++      N++      G + +       
Sbjct: 172 GGVNVFGSG-YAMRIWMDPLRLAQFQLTPTDLTTAVAQQNSTVSVGALGEQPVVAGQQFT 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  + +++ +                   +                 +          
Sbjct: 231 ANITAQSQLTSVE-------------DFRNILLKTGEDGATVRLGDVAEVEIGQTRYGRD 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   +    +     +   T          L+          +          S  
Sbjct: 278 SRFNGMNASGFAVNLATGANAVETASAVRATLEGLKNALPEGVEVHIAYDTAPFVELSIE 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T     GLV +V+ + +   +  L+   +I + ++ T  +L+ LG ++   ++  +
Sbjct: 338 KVYHTLIEAIGLVFLVILLFLQNWRATLIPIIAIPVVLLGTFGMLAALGYSVNTLTMFAM 397

Query: 421 VLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +             + +    +    +    +      + + F
Sbjct: 398 VLAIGLLVDDAIVVVENVERVMQEDGLGPVEATEKSMGQISGALIGIALVLSAVFLPMGF 457

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G      R F++T+  ++++S+  A+ +  AM   ++R     +              
Sbjct: 458 MPGSTGVIYRQFSVTIITAMVLSLLVALILTPAMCASLLRQSHGPARFAPARWFNAGFER 517

Query: 537 CIAIQFMRARF 547
                    R 
Sbjct: 518 VTRGYSATVRR 528



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 57/146 (39%), Gaps = 5/146 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L  I  + + +  T G  A  G   N   + A++  IG  V+D +VV + +     
Sbjct: 361 WRATLIPIIAIPVVLLGTFGMLAALGYSVNTLTMFAMVLAIGLLVDDAIVVVENV--ERV 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +   +  +KS+ +  G  +  ++      LPM    GS       F++ +   +V
Sbjct: 419 MQEDGLGPVEATEKSMGQISGALIGIALVLSAVFLPMGFMPGSTGVIYRQFSVTIITAMV 478

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           ++   ++ +   +   +       AR
Sbjct: 479 LSLLVALILTPAMCASLLRQSHGPAR 504



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 86/263 (32%), Gaps = 6/263 (2%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
             +      +     R  D  +V          +    +     +             A +
Sbjct: 772  ANRMQPEDVDSWYARNADGEMVPFTAFMTTRWEPVEPSLSRMDSIDAIEITGQQSDSASS 831

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             V     +++   +P         +  +  +   +   +  + + +  L    +   W  
Sbjct: 832  GVAMAAMEELVAQLPGGYGTAWTGLSYQERQSGNQAPWLFALSALVVFLSLAALYESWSI 891

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                +  + + +   +     FG   ++     +LT IG +  + +++ +  R+   L  
Sbjct: 892  PFSVMLAVPVGVLGAVVAALTFGQANDVYFKVGILTTIGLAAKNAILIVEFARE---LEQ 948

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAA 809
            +  +  +   ++    L   + TS+A  + VLP+A+  G+      S  I +  G++ A 
Sbjct: 949  SGRATVEAAVEAARLRLRPILMTSLAFILGVLPLAIATGAGAAAQNSIGIGVMGGMIAAT 1008

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
               IF+     + +     + AR
Sbjct: 1009 FLGIFMVPAFYVTVRRLTDRRAR 1031


>gi|224537880|ref|ZP_03678419.1| hypothetical protein BACCELL_02767 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520566|gb|EEF89671.1| hypothetical protein BACCELL_02767 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1064

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/694 (9%), Positives = 183/694 (26%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVFSAVISITIVILGII-----GLFTLPVEQYPDIAPPTVM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +     +  IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSTATNAGSVSITVYFKQGTDPDMAAVNVQNRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T   +   + +   +           +  +      Q+       
Sbjct: 115 ATGQLPGEVTQVGVTTMKRQTSILQMFSLHSPDNSYDENFLANYMSINLKPQLLRIAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +     P  + Q     + ++      N       FG            
Sbjct: 175 DMMIMG-GDYSMRVWMKPDVMAQYKLIPSDVTAALAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                ++           
Sbjct: 234 YKGRLI----------------TPEEFGEIVIRSTEDGEVLKLKDIADVELGKDSYAYKG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +     +    L   +R              +      S   
Sbjct: 278 GMDGHNGVSCMVFQTAGSNATEVNQNIDNLLDEVRKDLPKGVELTQMMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I +++I T A +S+ G ++ L ++  +V
Sbjct: 338 VVKTLIEAILLVILVVYVFLQDIRSTLIPLVGIIVSLIGTFAFMSVAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++             S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQSRFDVGYKSPYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + ++  
Sbjct: 458 SGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLRPYINEDGTQKNNFAARFRNSF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                          + F++ R+    +     +  + L+ +   +   D   G+    +
Sbjct: 518 NAAFDVVVNKYKNAVLFFIKRRWLSWSLLACSVVLLVLLMNSTKTSLVPDEDQGVLFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +  P        ++       +           +       G       ++  +K     
Sbjct: 578 STAPGSSLKTTDDVMLRIEERLEAIPQKLHIQKVAGYGLLSGQGNTFGMIVMKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    I  +    I
Sbjct: 638 TKKEDQVQAVIGQIYARTADIKDATIFAIAPGMI 671



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 86/201 (42%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +     +L+ V+K + + V L+ + ++         E+++  I  +++  + + +++   
Sbjct: 301 NQNIDNLLDEVRKDLPKGVELTQMMSSNDFLFASIHEVVKTLIEAILLVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  +I+ +  T  F ++ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 359 -DIRSTLIPLVGIIVSLIGTFAFMSVAGFSINLITLFALVLVIGTVVDDAIVVVEAVQSR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +     S       ++       + +S+      +P++   G+       F + MA  
Sbjct: 418 FDVGYK--SPYMASIDAMKGISNAVITSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +   +  
Sbjct: 476 VGISAINALTLSPALCALLLR 496



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 63/201 (31%), Gaps = 11/201 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            + ++                  G     E  + G   +I     ++IY+    +   +  
Sbjct: 838  DAIRAVKETAEISLPKGYGYDFGGITREENQQSGTTVIIFGICILMIYLILSALYESFIV 897

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I  + + +  T  F  + G+E N+     ++ LIG      +++     +      
Sbjct: 898  PFAVILAVPVGLMGTFLFAKIAGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERR 953

Query: 753  T-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +        +    L   + T++     + P+ V    G +   S    +  G+ + 
Sbjct: 954  KAGMGLIASAVSAAKARLRPILMTALTMIFGLFPLVVATGVGANGNRSLGTGVVGGMTIG 1013

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
              + +FI   + +     + +
Sbjct: 1014 TLALLFIVPALFVTFQWLQER 1034


>gi|121596307|ref|YP_988203.1| acriflavin resistance protein [Acidovorax sp. JS42]
 gi|120608387|gb|ABM44127.1| acriflavin resistance protein [Acidovorax sp. JS42]
          Length = 1031

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/613 (13%), Positives = 183/613 (29%), Gaps = 39/613 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN     +L+ ++   GLL           +  FP       +             L   
Sbjct: 9   RNPIPAAMLFVLLTLAGLLA-----FRSMKVQNFPDMDLPVVM---------VTASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   +  +       ++      I   F   +  +   D V   +  
Sbjct: 55  APGQLESDVARKIENAIATTQGLKHITSTLTDGTATIAAEFQLEKPVQEAVDDVRSAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D +  ++         I+      +Q+   A   S  +      ++       
Sbjct: 115 VRSDLPADLRDPIITKLELSSQPILAFAIASNQLDDEA--LSWFVDDTLTRRLLAVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    DP +L+ L  T A++S           G    +           
Sbjct: 173 AVNRVGGVAREVRVALDPLKLQALGATAAEVSRQLRQVQVESAGGRAELGGAEQPLRTLA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   EI+ + +                       G R         +   +A      
Sbjct: 233 TVQTAQEIAALEIAL--------------------SGGRHVRLDQVATVTDTVAEPRTAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     S     S              L A    ++L       V         
Sbjct: 273 LLGDKPVIGFEVSRSRGASEVEVGAGVQRALDQLMAEHPHLQLTR-TVDFVDIAQDEYDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +  +V+  ++ L+VI     + LLG ++ + ++  + 
Sbjct: 332 SMKLLYEGAILAVVVVWLFLRDWRATIVSAVALPLSVIPAFIGMHLLGFSINIITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEVENIVRHLRMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G A R F    G +  +++F ++ + R +   +  Y     +D     R+       +  
Sbjct: 452 GIAGRFFKQ-FGWTAALAVFASLVVARLLTPMMAAYIMKPMVDHEKEPRWLAAYMRASHW 510

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSNLES 600
            ++ R   +  ++LF + S+ L+      +   D     Q+ +       L+  R+ +  
Sbjct: 511 CLKHRVLTLLGALLFFVGSLALIPLLPSGFIPADDNAQTQVTLELPPGAKLADTRAVVAL 570

Query: 601 LQIGDISFQNFDG 613
                +   + + 
Sbjct: 571 ATERAMGVGHVES 583



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 80/254 (31%), Gaps = 10/254 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           ++ +   R V L  V +  +++     +    D         + +    V     ++   
Sbjct: 244 EIALSGGRHVRLDQVATVTDTVAEPRTAALLGDKPVIGFEVSRSRGASEVEVGAGVQRAL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++    P   +  T         E      +    + +A+++       W   + +   
Sbjct: 304 DQLMAEHPHLQLTRTVDFVDIAQDEYDSSMKLLYEGAILAVVVVWLFLRDWRATIVSAVA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +        L G   N+  + A+  ++G  V+D +V  + +   ++      +   
Sbjct: 364 LPLSVIPAFIGMHLLGFSINIITLLALSLVVGILVDDAIVEVENI---VRHLRMGKTPYQ 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     + T+       LP A   G        F    A  +     +S+ +A
Sbjct: 421 AAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGRFFKQFGWTAALAV----FASLVVA 476

Query: 817 APILLFIYDWRAKN 830
             +   +  +  K 
Sbjct: 477 RLLTPMMAAYIMKP 490



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 86/209 (41%), Gaps = 8/209 (3%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                     V E V++        ++++  ++   ++  EL     + ++   + + I +
Sbjct: 802  ELGERGLGEVTEAVRQLPAVRGLPASVRLIDVGDAEMMGELFASFGLAMLTGVVCIYIVL 861

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
             + FK +   +  +  L L +        L G  F++ ++  ++ L+G +  + +++ + 
Sbjct: 862  VLLFKDFLQPVTILAALPLSLGGAFVALLLAGKSFSMPSLIGLIMLMGIATKNSILLVE- 920

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF----AI 799
                +      +S  D +  + ++     + T++A    ++P+A+  G    SF    A+
Sbjct: 921  --YAIVARRHGMSRMDALLDACHKRARPIIMTTLAMGAGMMPIALALGGADMSFRSPMAV 978

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +  G++ +   S+ +   +  ++ D+  
Sbjct: 979  AVIGGLITSTVLSLLVVPAVFTYVDDFEQ 1007


>gi|78212723|ref|YP_381502.1| preprotein translocase subunit SecF [Synechococcus sp. CC9605]
 gi|78197182|gb|ABB34947.1| SecF protein [Synechococcus sp. CC9605]
          Length = 329

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/178 (29%), Positives = 98/178 (55%), Gaps = 5/178 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           Q+ + +GP + ++L+R  ++ ++++   +  YI  R+   ++  A+  L  D+    G F
Sbjct: 150 QSVDTIGPSLGKQLLRSSLISLLVAFGGIAAYISFRYDRRYSFLALVALAHDVAIVCGVF 209

Query: 712 ALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A  G    +E +     ++LT+ GYSVND VVV+DR+R+        +     +D++++ 
Sbjct: 210 AWLGVVLQLEVDSLFAVSLLTIAGYSVNDTVVVFDRIRE-RSKDAPDLPLSLQVDQAVSA 268

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           TL R++YTS    + +L +  +GG+ +  FAI +A G+VV + SSI +A  +L     
Sbjct: 269 TLTRTLYTSGTTLLPLLALVFFGGATLYWFAIALALGVVVGSWSSIALAPSLLTLWDR 326


>gi|332283400|ref|YP_004415311.1| AcrB/AcrD/AcrF family protein [Pusillimonas sp. T7-7]
 gi|330427353|gb|AEC18687.1| AcrB/AcrD/AcrF family protein [Pusillimonas sp. T7-7]
          Length = 1060

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/503 (12%), Positives = 138/503 (27%), Gaps = 28/503 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G L  L     Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGGLAML-----QLPISEYPEVVPPSVV---------VRAQFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVLAETVAAPLEESINGVENMLYMQSQANSDGNLVVTVNFHLGVDPDKAQQLVQNRVTQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + TT       ++                   +    D++   +   
Sbjct: 116 ALPRLPEEVQRLGVTTTKSSPTLTMVVHLISPDQRYDTTYLRNYAVLNIKDRLARIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T ++        N      + G          Q 
Sbjct: 176 EVQVWGAGDYSMRVWLDPGKMAQRNLTASEAVAAIREQNVQVAAGVIGASPTTPDVALQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 I    A      
Sbjct: 236 SVNAQGRLQTEE-------------QFSDIVLKTSADGGVTRLGDVARIELGAAEYGLRA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +    +   L A       + +          S   
Sbjct: 283 LLDNQPAVGIAIMQSPGSNALDISDQVRAVMDELSADFPSSLESRIMYDPTQFVRSSIHA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T +LL   G T+   S+ G+V
Sbjct: 343 VVMTLLEAIALVVLVVIVFLQTWRASIIPLLAVPVSIIGTFSLLLAFGYTINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAAGLSPRDATYRAMREVSGPIIAIALTLVAVFVPLAFMT 462

Query: 482 GGAVRGFAITMGLSILISMFTAI 504
           G + + F        + ++ +AI
Sbjct: 463 GLSGQFFKQFAMTIAISTVISAI 485



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G +  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILAALTGVWLTDGDNNIFTQIGLMVLVGLACKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L    +       ++    L   + TS+A  + V+P+ +    G  +  +  I + FG+
Sbjct: 960  -LELQGMDTVKAAIEASRLRLRPILMTSIAFIMGVVPLVIATGAGSEMRQAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +F+     + + +   + 
Sbjct: 1019 LGVTLFGLFLTPVFYVVLRNLGRRR 1043



 Score = 47.4 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 79/208 (37%), Gaps = 14/208 (6%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +    V +            + + V+  + E+       + E        + +R  I  V
Sbjct: 285 DNQPAVGIAIMQSPGSNALDISDQVRAVMDELSADFP-SSLESRIMYDPTQFVRSSIHAV 343

Query: 674 IISAI-----AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +++ +      +L+ I     W  ++  +  + + I  T      FG   N  ++  ++ 
Sbjct: 344 VMTLLEAIALVVLVVIVFLQTWRASIIPLLAVPVSIIGTFSLLLAFGYTINALSLFGLVL 403

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG  V+D +VV + + +N+      +S RD   +++ E  G  +       ++V     
Sbjct: 404 AIGIVVDDAIVVVENVERNIAA---GLSPRDATYRAMREVSGPII-AIALTLVAVFVPLA 459

Query: 789 W----GGSVIGSFAIPMAFGIVVAASSS 812
           +     G     FA+ +A   V++A +S
Sbjct: 460 FMTGLSGQFFKQFAMTIAISTVISAINS 487


>gi|325287248|ref|YP_004263038.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Cellulophaga lytica DSM 7489]
 gi|324322702|gb|ADY30167.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cellulophaga lytica DSM 7489]
          Length = 1045

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/521 (11%), Positives = 146/521 (28%), Gaps = 43/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++           ++ +P   P               + +    
Sbjct: 8   RPVLSTVISIIIVVLGVISI-----TSLPIEEYPDIAPPT-------------IKVSASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  + +     +   +   EG+   +     N   +IT+ F      +  A  V  
Sbjct: 50  TGANAETVLESVIIPIEEQINGVEGMSYITSTASNNGTAEITVYFDQEIDADIAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   N  L  +  +  + T  ++  +++      +     A      +    I  +   
Sbjct: 110 RVARANPLLPQEVIQTGVTTQKQETSALMFISMYSENEDYDATFIQNYLKINVIPAMQRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                     +    +     P +L       + +S      N        G     + +
Sbjct: 170 SGVGDVSVFSQQDYAMRIWLKPEKLAAYNLIPSDISAALAEQNLEAAAGSLGE---NNGE 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +                    +  +    I                 I       
Sbjct: 227 AFSYTLTYSGR-------------FKEQKQYGDIIIKALGNGEFLRLNDVATIELDAQSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +    IE      A +           V          
Sbjct: 274 SSNAMSLGNPAVFMGIFQTKGSNAQEIIENIKTTLASVEKDLPEGLNIFVPYDTSLFLNA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ +++I T   LS+ G ++ L ++
Sbjct: 334 SIEKVISTLVEAFLLVFLVVFIFLQDFRSTLIPAIAVPVSIIGTFFFLSVFGYSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +  +  ++   +  +  +     I    +      + 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHAKMDEGVKNPKKATLIAMNEISGAIISITLVMAAVFIP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F  G        F +T+ ++ILIS   A+++  A+   +
Sbjct: 454 VTFITGPTGVFYEQFGVTLIIAILISAVNALTLSPALCALL 494



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 91/251 (36%), Gaps = 6/251 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L+ V +     Q    +  +      F+   Q +  ++      ++     + + +
Sbjct: 256 EFLRLNDVATIELDAQSYSSNAMSLGNPAVFMGIFQTKGSNAQEIIENIKTTLASVEKDL 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P                  I K I  ++ + + + + ++I    +   L     + + I 
Sbjct: 316 PEGLNIFVPYDTSLFLNASIEKVISTLVEAFLLVFLVVFIFLQDFRSTLIPAIAVPVSII 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F ++FG   NL  + A++  IG  V+D +VV + +   M       + +     ++
Sbjct: 376 GTFFFLSVFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHAKMDEGVK--NPKKATLIAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           NE  G  +  ++      +P+    G        F + +   I+++A +++ ++  +   
Sbjct: 434 NEISGAIISITLVMAAVFIPVTFITGPTGVFYEQFGVTLIIAILISAVNALTLSPALCAL 493

Query: 823 IYDWRAKNARI 833
           +      +  +
Sbjct: 494 LLKEHKHDEEL 504



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 80/285 (28%), Gaps = 11/285 (3%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            +    S       + +         +D    + +   A     ++   +         ++
Sbjct: 757  YASDFSRFGKQFRVYIQALPDDRASVDDLNSMYVRTDAGEMTPITQFVNLERVYGPQSVT 816

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
              N                   A   + E V K  +      +    E V         +
Sbjct: 817  RFNLFNSTKITGATNEGFSTGDAIRIIEEEVAKLPSNYTVAYSGLTREEVNAGS-----Q 871

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
               + ++       +       +      + +L   +          G+E N+    A++
Sbjct: 872  TTFIFILSILFVYFLLSAQYESYLLPFAVVLSLPFGVFGAYISTKFLGLENNIYFQIALI 931

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG    + +++ +     ++      S  D         L   + TS A  + ++P+A
Sbjct: 932  MLIGLLAKNAILIVEFA---LQRRRAGESIVDAAIDGAKSRLRPILMTSFAFILGLMPLA 988

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +    G     S     A G+++     +F+   + +     + K
Sbjct: 989  LAKGVGAEGNNSIGTGAAGGMLIGTILGVFVIPILFILFQWLQEK 1033


>gi|328947789|ref|YP_004365126.1| protein-export membrane protein SecF [Treponema succinifaciens DSM
           2489]
 gi|328448113|gb|AEB13829.1| protein-export membrane protein SecF [Treponema succinifaciens DSM
           2489]
          Length = 416

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 1/255 (0%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               +     A+  V +  VRS L S  +      +       +     +   S    + 
Sbjct: 139 DAPVLLYVSDASTNVSIDDVRSALASESVEVKELGDDSNRSFQIRAAISKNDISSDSLQA 198

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
             +   K         I  T+ VG   S     K ++  +++ +A+ IY  IRF W FA 
Sbjct: 199 EIIGSLKEKFGESNVAIIKTDFVGSGFSSSNAIKSVILAVVTLLAIWIYCAIRFHWDFAA 258

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
           GAI  L+ D      F +   +EF+ T+ AAVLT+ GYS+N  +V+ DR+R+N+ L  T 
Sbjct: 259 GAIIGLVHDCLIMFSFISWTQVEFSATSFAAVLTIFGYSINATIVILDRVRENISLIQTK 318

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
             F D+++ SI+ETL RS+ T++    + + + V+    I  FAI +  G+V    SS+ 
Sbjct: 319 K-FNDILNASISETLSRSIITTVTTMFASVALLVFTSGSIKDFAIVLTVGLVSGCYSSML 377

Query: 815 IAAPILLFIYDWRAK 829
           I    +  +      
Sbjct: 378 IVPGFVSLMRRNWEP 392


>gi|209967126|ref|YP_002300041.1| acriflavine resistance protein F [Rhodospirillum centenum SW]
 gi|209960592|gb|ACJ01229.1| acriflavine resistance protein F [Rhodospirillum centenum SW]
          Length = 1048

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/500 (12%), Positives = 135/500 (27%), Gaps = 28/500 (5%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90
            + +FP   P                         V   +    +   + +        +
Sbjct: 32  PVAQFPPITPPAVQ---------VSATYPGANAQVVAETVAAPIEAQVNGVDDMLYMSST 82

Query: 91  MRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
                +  +T++F      +  A  V   +Q   + L     +  +    +    ++   
Sbjct: 83  STDAGSYSLTVTFEVGTDPDLAAINVQNRVQLATALLPSAVARQGVAVRKQSTNMLLAVN 142

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
                    ++  S        D++   E   +      +   +     P R+  L  T 
Sbjct: 143 LFATDERLDSLFISNYASLNLRDRVARIEGVGEAQVLGALTYSMRIWMYPDRMTSLGVTA 202

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
             +       N        G   +      Q  V  +  +                 +  
Sbjct: 203 GDIISALEAQNVQAPAGQIGAPPIGTDQRQQLTVIAEGRL-------------EDAQEFR 249

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
             +                ++            L        +       +     ++  
Sbjct: 250 QVVVRVGEAGALVRLGDVADVELGAQTYTASARLNGQPSATLVVYQSPDANALEVADSVR 309

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L     P     V          +      T AI   LV+ V F+ +   +  L+
Sbjct: 310 AEIERLAGQFPPGLDYAVVFDTTRFVSATIEEIALTLAITFVLVVGVTFLFLQDFRSTLI 369

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS-- 447
              +I ++++ T A+L +LG +    ++  +VL IGL VD  I+V E +           
Sbjct: 370 PTLAIPVSLVATFAVLLVLGYSANTVTLFALVLAIGLVVDDAIVVVENVHRVMGDAPDLA 429

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAI 504
              +           I  S +      V + F     G   R FA+T+ ++ LIS   ++
Sbjct: 430 PGTAAIRAMGEVTGPIVASTLVLAAVFVPVAFLPGITGQLYRQFAVTITVAFLISGLVSL 489

Query: 505 SIVRAMMIFIIRYKKMKSID 524
           ++  A+   I++        
Sbjct: 490 TLSPALCALILKPGHQPRRR 509



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 73/231 (31%), Gaps = 4/231 (1%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V    L +      +  N       +V              V   +++   +  P    
Sbjct: 266 DVADVELGAQTYTASARLNGQPSATLVVYQSPDANALEVADSVRAEIERLAGQFPPGLDY 325

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    +S  +    +   I   + + +       +   L     + + +  T    
Sbjct: 326 AVVFDTTRFVSATIEEIALTLAITFVLVVGVTFLFLQDFRSTLIPTLAIPVSLVATFAVL 385

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   N   + A++  IG  V+D +VV + + + M            I  ++ E  G 
Sbjct: 386 LVLGYSANTVTLFALVLAIGLVVDDAIVVVENVHRVMGDAPDLAPGTAAIR-AMGEVTGP 444

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            V +++      +P+A      G +   FA+ +    +++   S+ ++  +
Sbjct: 445 IVASTLVLAAVFVPVAFLPGITGQLYRQFAVTITVAFLISGLVSLTLSPAL 495



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 52/141 (36%), Gaps = 10/141 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRK 746
             W   L  + ++ + +   LG   L     ++ A   ++ L+G +  + +++  + R R 
Sbjct: 891  SWTLPLAVVLSVSVALLGALGGLLLTASPLDVYAQIGLVLLVGLAAKNAILIVEFSRTR- 949

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                    +S  D             + T+ +  + V+P+ V    G +   S  I +  
Sbjct: 950  ----LEHGMSVIDAAVDGARTRFRAVLMTAFSFILGVVPLLVASGAGAASRQSIGITVFS 1005

Query: 804  GIVVAASSSIFIAAPILLFIY 824
            G++ A    I     + + I 
Sbjct: 1006 GMLAATLVGIIFVPLLFVLIE 1026


>gi|189460611|ref|ZP_03009396.1| hypothetical protein BACCOP_01252 [Bacteroides coprocola DSM 17136]
 gi|189432687|gb|EDV01672.1| hypothetical protein BACCOP_01252 [Bacteroides coprocola DSM 17136]
          Length = 1036

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 65/635 (10%), Positives = 168/635 (26%), Gaps = 44/635 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPIDQYPQITPPV-------------VKISASYPGASAVTVSQAVATPIEQELNGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   ++   S L  +  +N +    +    
Sbjct: 78  YMESNSSNSGGFSATVTFDISADPDLAAVEIQNRIKLAESSLPAEVVQNGISVEKQAASQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++      D      I  S       +D +       +          +    DP++L  
Sbjct: 138 LMTICLRSDDPKFDEIYLSNFATINVLDLLRRVPGVGRVSNIGSRYYAMQIWVDPAKLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T   +       N      + G + +   D                +          
Sbjct: 198 FGLTVQDVQNALKDQNRESAAGVLGQQPVSGLDIT--------------IPITAQGRLST 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +    +       +                +    
Sbjct: 244 VSQFEEIVLRANADGSLIRMRDVARVSLEASSYTTESGINGGNAAVLGIYMLPGANAMDV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E        +           +          S      T      LV+IV+F+ +   
Sbjct: 304 AEKVKETMEEISKNFPEGLQYEIPFDITTYISESIHEVYKTLFEALVLVIIVVFLSLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  ++   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +     +
Sbjct: 364 RATVIPIVAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGIVVDDAIVVVENVERIMEE 423

Query: 445 NQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISM 500
            + S + +           +  +++      V + F     G   R F++T+ +S+++S 
Sbjct: 424 EKLSPYEATKKAMDGLTGALIATSMVLAAVFVPVSFLSGITGQLYRQFSVTIAVSVILST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF--------MRARFWGVGI 552
             A+++   M   I++            +           ++           R   VG 
Sbjct: 484 VVALTLSPVMCSLILKPTDPNKPKNRVFTFINKWLAIGNTKYVAGIKRVVKHPRRVIVGF 543

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            I+     +            + +G   + +       L   R   +      +   + +
Sbjct: 544 GIVIICIFMFHRLVPTSFLPTEDQGFFTVELELPEGTTLERTREVTDRAVAFLMKDPSVE 603

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +N                  + + + K  +   
Sbjct: 604 YVQNVTGSSPRVGTSQARSQLTVILKEWKQRDDTT 638



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 91/247 (36%), Gaps = 13/247 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V                  G    L        +++     ++   ++I++  P     
Sbjct: 265 DVARVSLEASSYTTESGINGGNAAVLGIYMLPGANAMDVAEKVKETMEEISKNFPEGLQY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                      E I +    +  + + ++I +++    W   +  I  + + +  T GF 
Sbjct: 325 EIPFDITTYISESIHEVYKTLFEALVLVIIVVFLSLQSWRATVIPIVAVPISLIGTFGFM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINET 768
            +FG   N+  +  ++  IG  V+D +VV    +R+ +        +S  +   K+++  
Sbjct: 385 LIFGFSLNMLTLLGLILAIGIVVDDAIVVVENVERIMEE-----EKLSPYEATKKAMDGL 439

Query: 769 LGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  + TSM      +P+  + G  G +   F++ +A  ++++   ++   +P++  +  
Sbjct: 440 TGALIATSMVLAAVFVPVSFLSGITGQLYRQFSVTIAVSVILSTVVAL-TLSPVMCSLIL 498

Query: 826 WRAKNAR 832
                 +
Sbjct: 499 KPTDPNK 505



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 57/139 (41%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L + +       AL G+E +      ++ LIG +  + +++ +  ++ +
Sbjct: 889  SWSIPIAVLISLPVAVLGAYAGVALCGLENDTYFQIGLVMLIGLAAKNAILIVEFAKEEV 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                      +    + +      + TS+A  + ++PM +    G +   +    + FG+
Sbjct: 949  ---DNGKDLVEAALHAAHLRFRPILMTSLAFILGMVPMVIATGPGSASRQAIGTGVFFGM 1005

Query: 806  VVAASSSIFIAAPILLFIY 824
            +VA +  I +     + IY
Sbjct: 1006 IVAVTVGILLVPFFFVMIY 1024


>gi|146329707|ref|YP_001210075.1| mutidrug efflux protein [Dichelobacter nodosus VCS1703A]
 gi|146233177|gb|ABQ14155.1| mutidrug efflux protein [Dichelobacter nodosus VCS1703A]
          Length = 1046

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 78/685 (11%), Positives = 185/685 (27%), Gaps = 35/685 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   GL  A      +  ++++PS      I+                 
Sbjct: 8   RPIFAWVVAIFIMIAGLFSA-----TRLPIEQYPSISAPT-IN--------ISFAYLGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                IT++F      +     V   L  
Sbjct: 54  AQTIQDSVISIIEEQMNAIEGIDYMESKAYSNGHGAITITFHSGIDADLAQVNVQNKLSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI-EQSMEIIRQRIDQIGISEST 180
           V S+L    +   ++ +   +  ++L+    +      I E S   ++    ++      
Sbjct: 114 VESRLPQSVRNMGIMISQASDNFLLLTALYAEDNARQDIGEISDYAVQVIKPELQRVSGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP +L+    + A +       N        G           
Sbjct: 174 GEVQIFGS-ERAMRIWVDPQKLKSYNLSFADVQQAIASQNIQITAGTLGDTPNVLGQQYS 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +  +              +    +   +             +          
Sbjct: 233 ASIHIQGLLGSVE-------------EFEKIVIKYDFNGATVKLKDVAVVELGKQTYAFN 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L             +  +     +        L           +          S  
Sbjct: 280 TRLNGKPAIGIGVRLSSTGNAVAAAKEIRTKMESLSHYFPEGVSWDIPYDTSTFIKISLG 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T A    LV IV+++ +   ++ ++    + ++++  LAL+  +G ++ + ++  +
Sbjct: 340 KVLHTLAEAILLVFIVMYLFLQNIRYTIIPTIVVPISLLGALALMYPMGLSINVLTMFAM 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFS---RAYSTIFDSNITALIATVV 476
           VL IG+ VD  I+V E +       Q + + +          A   I    I+  I    
Sbjct: 400 VLVIGIVVDDAIVVVENVERLIVTEQLTPYQAAQKSMQQITNAVIGITLVLISVFIPMAF 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           L    G   R F++ M  SI  S F A+S+  A+   I++  +  +      + F  I  
Sbjct: 460 LSGATGAIYRQFSLVMAASIGFSAFLALSLTPALCATILKPARHHANKTGFFAGFNRIIK 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            I   +       + +S         L+      +       + +           +   
Sbjct: 520 TITRLYQETVGRLIRLSYAMMAVFFGLVLLSVFIFTRIPTSFLPVEDQGTVITTYQLPAG 579

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
                    I         N  +          + +   + +      +   S  +    
Sbjct: 580 ATLERTKHMIEKAEDIVLNNKDLVKSMTTVIGFSFSGQGQNMAFSFISLNDWSQRRGKGQ 639

Query: 657 VGPKISRELIRKGIVGVIISAIAML 681
                +R L    +  +  + I  L
Sbjct: 640 DSISFTRRL-NGMLQSINEAFIFAL 663



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 61/167 (36%), Gaps = 10/167 (5%)

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
                + +      +Y        FA+  +  L +    T+G F   G E ++     ++T
Sbjct: 874  AFSALAVFLCLAALYESW--SIPFAVLLVVPLGI-FGVTMGNF-FRGYENDIYFKIGMIT 929

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            ++G S  + +++ +  ++   L    +S       +        + TS+A    V+P+  
Sbjct: 930  VMGLSAKNAILIIEFAKE---LQDDGMSKVRAAMSAAALRFRPIIMTSLAFIAGVVPLYF 986

Query: 789  WGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G   S   +    + +G+++    SIF      + I    +   R
Sbjct: 987  ASGASSSSQRAIGTSVLWGMLIGTILSIFFVPIYYVVIRKIFSGKKR 1033



 Score = 44.3 bits (102), Expect = 0.099,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 82/246 (33%), Gaps = 9/246 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +  +       ++              N        + +  +   +       + ++ 
Sbjct: 250 IVIKYDFNGATVKLKDVAVVELGKQTYAFNTRLNGKPAIGIGVRLSSTGNAVAAAKEIRT 309

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWYFALGA 696
           K+  +        +  +    S  +       +   A A+L+   + +       + +  
Sbjct: 310 KMESLSHYFPEGVSWDIPYDTSTFIKISLGKVLHTLAEAILLVFIVMYLFLQNIRYTIIP 369

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + + +   L      G+  N+  + A++ +IG  V+D +VV + +     + T  ++
Sbjct: 370 TIVVPISLLGALALMYPMGLSINVLTMFAMVLVIGIVVDDAIVVVENV--ERLIVTEQLT 427

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
                 KS+ +     +  ++      +PMA   G+       F++ MA  I  +A  ++
Sbjct: 428 PYQAAQKSMQQITNAVIGITLVLISVFIPMAFLSGATGAIYRQFSLVMAASIGFSAFLAL 487

Query: 814 FIAAPI 819
            +   +
Sbjct: 488 SLTPAL 493


>gi|262199371|ref|YP_003270580.1| acriflavin resistance protein [Haliangium ochraceum DSM 14365]
 gi|262082718|gb|ACY18687.1| acriflavin resistance protein [Haliangium ochraceum DSM 14365]
          Length = 1055

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/517 (11%), Positives = 146/517 (28%), Gaps = 41/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L + I   G++        +  +D FP                   ++    
Sbjct: 9   KRPVFATMLIAAIVVFGIV-----LYNRLSVDLFPDVNFPVVT---------VTVIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  + L        +  +    + L F           +V   +  
Sbjct: 55  GPETMESQVADPIEEAVNSLSGVRTLRSTSVESVTTVMLEFELGVDIGTATQEVRDRVAT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    +  ++         I+    + +   S  +        +   ++       
Sbjct: 115 VQDELPASAEVPIVQKFDIGAAPIMQLAVHGETDESTLL---RYAEERLKPELERISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++     P  LR    T  ++       N                     
Sbjct: 172 QVDVVGGREREMHVWLRPEALRSYGLTVHEVMQALGAQNLDLPAGRVE------------ 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G        +   ++   +  +     G           +           
Sbjct: 220 --------RGGREFAVRTDVQARSADALARLVLVTRGDAVITLADVAEVEDSFEEARSLA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +   ++  +     +    +   LR  + P     V   N      S   
Sbjct: 272 RLDGTPAVALVVRKQSDANTVEVADLVSEVLPTLRERAPPGAQIDVLVDNSTNIRASIET 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    + A L + ++F+ +   +   ++  ++  +VI T   + ++G TL + +  G+ 
Sbjct: 332 VQFDLLLGAFLAVAIIFLFLRDPRATFISALALPTSVIGTFGFVEVMGFTLNMMTTLGLS 391

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ +D  I+V E I        +    +   G +     +  + ++ +   V + F 
Sbjct: 392 LSIGILIDDAIVVIENIVRRRSALGEDPMTAAGRGTAEIGLAVLATTLSIVAVFVPVAFM 451

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G        F +T+  ++L+S+F + ++   +    
Sbjct: 452 EGMIGQFFYEFGLTVAFAVLLSLFVSFTLTPMLSSRF 488



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 68/206 (33%), Gaps = 6/206 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +VR Q           V E++        P + I         I   +       ++ + 
Sbjct: 282 VVRKQSDANTVEVADLVSEVLPTLRERAPPGAQIDVLVDNSTNIRASIETVQFDLLLGAF 341

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           +A+ I             +   L   +  T GF  + G   N+     +   IG  ++D 
Sbjct: 342 LAVAIIFLFLRDPRATFISALALPTSVIGTFGFVEVMGFTLNMMTTLGLSLSIGILIDDA 401

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVI 794
           +VV + +    +             +   E     + T+++     +P+A      G   
Sbjct: 402 IVVIENI--VRRRSALGEDPMTAAGRGTAEIGLAVLATTLSIVAVFVPVAFMEGMIGQFF 459

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPIL 820
             F + +AF ++++   S F   P+L
Sbjct: 460 YEFGLTVAFAVLLSLFVS-FTLTPML 484



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/174 (11%), Positives = 66/174 (37%), Gaps = 7/174 (4%)

Query: 659  PKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIE 717
             ++  E +    + + ++ I + + +  +F+ +      + +L        G   +  + 
Sbjct: 842  ARMMGETMNSMALALFLAIICVYMILASQFESFIHPFTIMASLPFSFVGAFGGLLVMQMR 901

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             ++ A+  ++ L+G    + +++ D     ++           ++ +    L   + T+ 
Sbjct: 902  MSIFAMIGLIMLMGLVTKNAILLIDFA---IQRRDEGEPMNLALENAGAIRLRPILMTTA 958

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            A    +LP+A+    GG V     + +  G++ +   ++ +   I   +     
Sbjct: 959  AMIFGMLPVAIGHGDGGEVRAPMGVVVIGGLITSTILTLVVVPVIYNLMDGLSR 1012


>gi|260903848|ref|ZP_05912170.1| preprotein translocase subunit SecF [Brevibacterium linens BL2]
          Length = 338

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 133/312 (42%), Gaps = 13/312 (4%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L     +I F+      + IS    + S+ +    G N+GI FKGG Q  V
Sbjct: 2   KRFFAWGNRLHNGESSIPFVGKAKLWLMISGALVLLSLLVPLIAGFNFGIAFKGGSQFQV 61

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +     +  +  G         +    +       + ++  ++ E+    + 
Sbjct: 62  DHVSDTAPAKGEDLVSEVVPGSEPRLTPTSDTAVRI-----ETNQLSDDQMQEVRDALVG 116

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                +    +  VGP+  +++  K I  ++I     ++ + + F+ W  +L AI  L +
Sbjct: 117 GYDVKAEDVTSTFVGPEWGQDVTEKMIRALVIFVGIAMVVMALYFRTWKMSLAAIVGLFV 176

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS--FRDL 760
            +  T G ++  G E    AV   LT++ +S+ D VVV+D++R+N   +       F +L
Sbjct: 177 VMIVTTGIYSATGFEITPEAVIGFLTVLSFSLYDTVVVFDKIRENTTRFKDKRDLKFSEL 236

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           ++  IN+T  RS+ TS+ + + +  +      + G   +   ++ +  G +VAA+S++F+
Sbjct: 237 VNLGINQTTVRSINTSVVSVLPIASILFIGVFLLGAGTLVDISLSLFIGTIVAAASTLFV 296

Query: 816 AAPILLFIYDWR 827
           A+P+   +    
Sbjct: 297 ASPLYALLRAKE 308


>gi|328473302|gb|EGF44150.1| putative multidrug resistance protein [Vibrio parahaemolyticus
           10329]
          Length = 1037

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 64/651 (9%), Positives = 175/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVAALVLSMLLCVFGYVS-----FSKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +    R  +D+  +     
Sbjct: 115 AQRSLPDEADDPIVYKNNGSGEASLYINLSSSE--MDRTQLTDYAERVLMDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SIDLSGGLYKVMYVKLKPELMAGRAVTASDITSALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +     G    +     ++           
Sbjct: 219 -----VRNDSTVMSVRTARTYNTPEDFQYLVIKRASGNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++         S   
Sbjct: 274 KSDGVVNISLGVVPQSDANPLEVAKLVRSEVDNIQKFLPEGTRLAIDYDATVFIERSIEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   I++     +     + R F   +  
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNRFNEVVDRLFSKLENG 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ--LGVLANRPVDLSVVRS 596
               ++        + L  +  +   +                 +     R  D +    
Sbjct: 514 YRSLLKGALKARLAAPLVILACMGGSYFLMNQVPAQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MSANMDIVEDRLMPLLGQGYLKSFSIQTPAFGGQAGDQTGFVIMILEDWNE 624



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L +          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARTYNTPEDFQYLVIKRASGNTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L   P        V ++V+ ++  I           +    +  + R        +
Sbjct: 279 VNISLGVVPQSDANPLEVAKLVRSEVDNIQKFLPEGTRLAIDYDATVFIERSIEEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNR 498



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        + G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMFTVPMGVFGGFLGLVVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    + F   I  +    L   + T+       +P+ V    G     +    + FG+
Sbjct: 931  QLRDRGVEFEKAIIDAAARRLRPILMTAFTTLAGAIPLIVSTGAGYESRIAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
              A   ++F+   +   I     
Sbjct: 991  GFATLVTLFVIPAMYRLISAKTQ 1013


>gi|17549677|ref|NP_523017.1| transporter transmembrane protein [Ralstonia solanacearum GMI1000]
 gi|17431931|emb|CAD18609.1| probable transporter transmembrane protein [Ralstonia solanacearum
           GMI1000]
          Length = 1034

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 81/669 (12%), Positives = 193/669 (28%), Gaps = 41/669 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+ + ++   GL+        +  +  FP                     LE  
Sbjct: 9   RNPVPAVLCFILLTVFGLI-----GFHKLQVQDFPDMDLPTI---------SISASLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L +       +      I++SF   +  +    +V   + G
Sbjct: 55  APSQLENEVARKIEDKLTSLSQLDHITTKITDGAVSISVSFKLEKDPQTALSEVRNAVDG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +     +  +     +++    +   +     + S  +       +   +   
Sbjct: 115 ARASLPSEMAAPTVSKSDAANSALLTYTASSTTL--DEQDLSWFVDNDLAKALLSVKGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I  ++  + +P+ +  L  T   +S         + G    +   R S     
Sbjct: 173 KVERIGGIDREVHVDLNPALMAGLGLTAETVSSELTAMQRERSGGQGDIGGQRQSSRTLV 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +++ + +                         RR        +    A      
Sbjct: 233 GVGSAADVAALTITT--------------------GDGRRVRLDQIARVTDGAADRASYA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +     + +A+ + + T+      A    A S P          V     +   
Sbjct: 273 FLDGKPVVGVQIT-RAKGNSDVTVLHDVRKAIATFAESHPEVRLAEASNTVSPIEDNYEG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L + V++  +  G+  LV+  ++ L++I T   + L G +L   ++  + 
Sbjct: 332 SMSMLIEGALLAIAVVWWFLRDGRATLVSAAALPLSIIPTFGAIYLAGYSLNTITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  ++ + +           +  +    +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIERHLRMGKTPYQAAMEAADEIGLAVIATTFALVAVFLPTAFMS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T  +++L+S+  A  +   M  +++      +    P+   +L     
Sbjct: 452 GIPGLIFRQFGVTASVAVLMSLLVARLLTPMMAAYLM-KATRHAERDGPVMTRYLRWVGG 510

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +          G+ +L S+     L T         +  + L +     ++ S   +  
Sbjct: 511 GLDKRGRTMLAAGLMLLLSLAMAAALKTGFFPAQDKAQTQVTLELTPGSTLEQSRAVALQ 570

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
               I  +                  P    + T  +      +  +           V 
Sbjct: 571 AEALIRRLPEVKGVFSTVGSASDSSNPAAGTSSTADVRTSTLVVDLVARGERKSKQSAVE 630

Query: 659 PKISRELIR 667
             I  +L  
Sbjct: 631 EAIRHQLRD 639



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 72/249 (28%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     R V L  +    +                  +   + +    V     +    
Sbjct: 244 TITTGDGRRVRLDQIARVTDGAADRASYAFLDGKPVVGVQITRAKGNSDVTVLHDVRKAI 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
               E  P   +         I         + +  + +A+ +  W        L +   
Sbjct: 304 ATFAESHPEVRLAEASNTVSPIEDNYEGSMSMLIEGALLAIAVVWWFLRDGRATLVSAAA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I  T G   L G   N   + A+  ++G  V+D +V  + +    +      +   
Sbjct: 364 LPLSIIPTFGAIYLAGYSLNTITLLALSLVVGILVDDAIVEIENI---ERHLRMGKTPYQ 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     + T+ A     LP A   G        F +  +  ++++   +  + 
Sbjct: 421 AAMEAADEIGLAVIATTFALVAVFLPTAFMSGIPGLIFRQFGVTASVAVLMSLLVARLLT 480

Query: 817 APILLFIYD 825
             +  ++  
Sbjct: 481 PMMAAYLMK 489



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 4/158 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
              +    +   EL +   + + I    +   + + F  +      +  L L +   L  
Sbjct: 831 HQVQQGELQNMSELFQSFGLAMAIGVFCVYAVLVLLFHDFLQPATILCALPLSLGGALLS 890

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +  + F++ A+  +L L+G    + +++ +     M      +S    +  + ++   
Sbjct: 891 LLITRMSFSMPALIGLLMLMGIVTKNSILLVE--YAIMARREHGLSRLAALMDACHKRAR 948

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             V T++A    +LP    G     SF  PMA  ++  
Sbjct: 949 PIVMTTIAMGAGMLP-NALGLGAEPSFRQPMAIVVIGG 985


>gi|237750092|ref|ZP_04580572.1| multidrug resistance protein mexb [Helicobacter bilis ATCC 43879]
 gi|229374279|gb|EEO24670.1| multidrug resistance protein mexb [Helicobacter bilis ATCC 43879]
          Length = 1031

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 86/683 (12%), Positives = 204/683 (29%), Gaps = 41/683 (6%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L  ++  +G +           ++ +P  +P   +                   + V  
Sbjct: 2   VLSIVLTLVGAISI-----YILPVEEYPQVVPNEIV---------VQATYTGASAEVVAN 47

Query: 69  FLQMYSDELRSFLKK-EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
            +    ++  + ++    +   S       I++ F++    +     V   +Q   S+L 
Sbjct: 48  TVASVLEDSINGVEGMLYMKSSSSSSGVVSISVYFSNDTNADMAMVNVNNRVQSSLSRLP 107

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            + ++  +    +    + +     D  I  +   +   +   ++++         +   
Sbjct: 108 AEVQRVGVNVYKKSSTLLAIYAMYSDNAIHDSTYVANYALLNVVNELKRVPGVGDVIVFS 167

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                +    D  +L Q   + ++++      N+      FG   L D     Y V    
Sbjct: 168 NRDYSMRIWLDIDKLSQNNLSPSEVAQVISEQNSQFAVGSFGAEPLNDKVAFTYSVSTHG 227

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
                             ++    I                 I           +     
Sbjct: 228 R-------------FISANEFGNIIIRSNADGSALRLKDVAKIELGAKDYSVSPLFKGKE 274

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                 S +   +              L                      S      T A
Sbjct: 275 SVGFGISAQPGANALDVANGVAKRLEELAENFPNGIQYNNVYDTTTFVKISIKEVIKTFA 334

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               LV+I+++  +   +  ++   +I ++++   A +  LG ++ L ++ G++L IG+ 
Sbjct: 335 EAIVLVIIIMYFFLQNFRATIIPVIAIPVSIVGAFAGMYALGFSINLLTLFGLILAIGIV 394

Query: 428 VDSNIL---VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF----- 479
           VD  I+     ERI            S+     +A S I    +  ++    +F      
Sbjct: 395 VDDAIIVIENVERILHTETNENGEKYSVKEATLKAMSEIQGPVVAIVLVLCSVFIPVAFI 454

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
             F G   + FAIT+ +S++IS F A+++  A+ + I++ K+ K      + RF  + D 
Sbjct: 455 GGFTGAIYKQFAITIVISVVISGFVALTLTPALCVSILKAKEPK--PFYLVKRFNDVFDW 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +  +F +     +    L S+C I ++      +       +           L +  + 
Sbjct: 513 LTFKFGKQIARALRRGGLLSLCFIAIIGVTWGLFKRLPTSLVPSEDKGIVISSLQLPPAA 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
             S  I +        E++  +   +                  I   +   + ++    
Sbjct: 573 SLSRTIVEGKKALSFLEQDPNIDYSFLIAGYDMLAGAARTSGAIIFTTLKDWSKRDQSAA 632

Query: 658 GPKISRE-LIRKGIVGVIISAIA 679
                   L+ K +    I   A
Sbjct: 633 SIVGKFYVLLNKQLEANAIVFGA 655



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 85/246 (34%), Gaps = 8/246 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       +   +S      E            +++     +    +++ E  P     
Sbjct: 253 DVAKIELGAKDYSVSPLFKGKESVGFGISAQPGANALDVANGVAKRLEELAENFPNGIQY 312

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N         +  I++ I     + + ++I ++   + +   +  +  + + I       
Sbjct: 313 NNVYDTTTFVKISIKEVIKTFAEAIVLVIIIMYFFLQNFRATIIPVIAIPVSIVGAFAGM 372

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRM-RKNMKLYTTSISFRDLIDKSINE 767
              G   NL  +  ++  IG  V+D ++V    +R+            S ++   K+++E
Sbjct: 373 YALGFSINLLTLFGLILAIGIVVDDAIIVIENVERILHTETNENGEKYSVKEATLKAMSE 432

Query: 768 T---LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               +   V    + FI V  +  + G++   FAI +   +V++   ++ +   + + I 
Sbjct: 433 IQGPVVAIVLVLCSVFIPVAFIGGFTGAIYKQFAITIVISVVISGFVALTLTPALCVSIL 492

Query: 825 DWRAKN 830
             +   
Sbjct: 493 KAKEPK 498



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 65/172 (37%), Gaps = 12/172 (6%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G +  +   I + + +  ++ +W   L  +T +   +   +    L G++ ++     +
Sbjct: 859  TGAIAFVFGLIFVFLILCAQYERWLMPLSVLTAVPFAVFGAVLATTLRGLDNDIYFQIGL 918

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET---LGRSVYTSMAAFISV 783
            + LI  S  + +++          +      + +I+ +I          + TS+A  I V
Sbjct: 919  VMLIALSAKNAILIV-----EFAQHLHEREGKGIIESAIGAAKLRFRPIIMTSLAFSIGV 973

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            LP+A+    G +   +    +  G++ A   +IF       ++        +
Sbjct: 974  LPLALSSGAGSASRHAIGTGVIGGMMAATFIAIFFIPLFWSYVARLNEWLNK 1025


>gi|87125267|ref|ZP_01081113.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           RS9917]
 gi|86167036|gb|EAQ68297.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           RS9917]
          Length = 1134

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 69/525 (13%), Positives = 149/525 (28%), Gaps = 33/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I  +GL+       P   ++  P   P   I                 +
Sbjct: 10  RPVLTTVCSILIVIVGLIAI-----PILPIENLPDIAPPT-IK--------VRATYTGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++       +      + I ++FA     +     V   +  
Sbjct: 56  AVSVEEGVTSVLEQQINGVENMDFIKSNSSSDGVSAIDVAFASGTDGDINQVNVQNRVSL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQIGISE 178
              +L  + +K  +         +++     +        A   S  +     D I   +
Sbjct: 116 AEPQLPEEVRKAGVTVNKASNSILLVYNFVSEDPDKIFYSAETISGLLDLNLTDAIKRVK 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                       +      DP++L     T++++       N        G         
Sbjct: 176 GVGDLTYFGNRKLAFRLWLDPNKLTAFGLTSSEVVNQVSSQNRLVPAGQVGGEPSPQGQE 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + V+ +  +  +                   +   E G                +  +
Sbjct: 236 FTFTVQLQGRLRSVEEFENM------------IVRTVEDGGLVRLRDVGTVQLGGESYAV 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L             +  +     +    + A   A             N      S
Sbjct: 284 SATDLQGVPSVGLAVYQLSGSNALEVSDGVKQVLADFEASMPVGLKMEKIYDNTDFISAS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 +      LV+++LF+ +   K  LV   +I + +I T  L+   G +L   ++ 
Sbjct: 344 IQGVVNSLRDAVVLVVLILFLFLQNWKATLVPGIAIPVALIGTFGLVLAFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+VL  GL VD  I V E    +  +  S   +        +S +  +++      + + 
Sbjct: 404 GLVLATGLVVDDAITVIEDTSSKRAEGLSALEAAKATMDELFSAVIATSLVKFAVFLPVL 463

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           FF    G   + FA T+  SI IS F A++    +   ++  +  
Sbjct: 464 FFPGATGTIYKQFAATVIFSIAISTFNALTFSPMLSALLLARESK 508



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T G    FG   N   +  ++   G  V+D + V   +     
Sbjct: 369 WKATLVPGIAIPVALIGTFGLVLAFGFSLNQLTLFGLVLATGLVVDDAITV---IEDTSS 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +S  +    +++E     + TS+  F   LP+  + G+       FA  + F I 
Sbjct: 426 KRAEGLSALEAAKATMDELFSAVIATSLVKFAVFLPVLFFPGATGTIYKQFAATVIFSIA 485

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++  +++  +  +   +    +K+
Sbjct: 486 ISTFNALTFSPMLSALLLARESKD 509



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 9/230 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D    +  L        +          L R     G         + +         L+
Sbjct: 882  DQQGDQIPLSEFFTVKETVGPTVVPHFNLYRSIKIEGTPAPGKSSGQAINAMKAIFARLN 941

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                +         E+    +  VI +   + +Y+ +      +   L  + T+   +  
Sbjct: 942  PQGLSFDWTGISREEVKAGALAVVIFALGVLAVYLVLAAQYESYSDPLIILMTVPTAMLG 1001

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L F AL G   N+ A   ++ LIG +  + +++ D      +      S  +    +  
Sbjct: 1002 ALIFLALRGEVLNVYAQVGLVMLIGLAAGNGILIVD---LANQRMLAGASALEAARFAAG 1058

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
              L   + T++++    LP+    G+      S    +  G++VA   S+
Sbjct: 1059 SRLRPILMTAISSLFGFLPLVFASGAGARSQTSLGAVVFGGLLVATVLSL 1108


>gi|317503928|ref|ZP_07961936.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Prevotella salivae DSM 15606]
 gi|315664954|gb|EFV04613.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Prevotella salivae DSM 15606]
          Length = 1097

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/700 (11%), Positives = 196/700 (28%), Gaps = 60/700 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   +  +G +      L    ++++P   P               + +   
Sbjct: 8   KRPVLSTVISIFLVLLGAI-----GLVSLPIEQYPDIAPPT-------------ISVMTS 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                   +       L   +   E +   S     +    IT+ F      +  A  V 
Sbjct: 50  YTGADAQTVLNSVITPLEESINGVENMTYMSSTATNSGMAMITVYFKQGTNADMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   + L  +  +  +  +  +  ++++     D         +       +  +  
Sbjct: 110 NRVQQAQALLPAEVTRVGVTVSKRQSSNVIMYSLTTDDGRYDGQFLTNYNNINIVPLLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P +++Q     + ++      N        G      S
Sbjct: 170 IKGVGDVHTPGTATYSMRIWLQPDKMKQYGLVPSDITNVLAEQNIEAAPGSLGE---NGS 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y +  +  +               T +    +    +            +     +
Sbjct: 227 VAYEYALRYRGRL-------------KSTTEFENIMLKSSLTGETLRLKDVAKVELGALM 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +         + +  A  +     E              P     +E+       
Sbjct: 274 YNVKLINNGQPAVMGMVNQIAGSNATDIAEAVKSALEEASKSFPPGMKYTIEQDTTEFLF 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV IV+++ +   +  L+   ++ + +I T   L + G ++ L  
Sbjct: 334 ASIEEVIMTLFITLALVFIVVYIFLQDIRSTLIPMIAVPVALIGTFFFLWVFGFSINLLV 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ ++L I + VD  I+V E +  +  +   S   +     +     I    +      V
Sbjct: 394 LSALLLAIAIVVDDAIVVVEAVHAKLDQGYKSAMTASIDAMNEISGAIISITLVMAAVFV 453

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYK 518
            + F GG +    R F +TM LSI+IS   A+++  A+                     +
Sbjct: 454 PVSFLGGTSGTFYREFGVTMALSIVISAINALTLSPALCAIFLKPHDEEKDETNKNFVSR 513

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
              + +           + +        +  + + I   +  I +  T       +  G 
Sbjct: 514 FHSNFNRVFDKTTEKYKNGVTRVINHKLWTSLAVIIGIVVLVISMKVTKTGLIPDEDTGT 573

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + + AN           LE +     S       +            S   T ++++ 
Sbjct: 574 LFVMISANPGTSQERTHEILEEVDKMLASNPAIQRREGIAGYNFIAGQGSDQATFIIKLK 633

Query: 639 KKKITEIVPLSTIQNTEIVGPKIS---RELIRKGIVGVII 675
             +       + I+N    G  ++     L    ++G+I 
Sbjct: 634 PFEERSGGFFTRIKNAISHGDPMALIVNPLEANSVLGMIY 673



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/395 (9%), Positives = 110/395 (27%), Gaps = 22/395 (5%)

Query: 451  SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
            S+     +  +TI D+    ++A       G     G  +T+       +    ++ +  
Sbjct: 667  SVLGMIYKQTATIKDAQ---ILAFGPPMVPGFSVQNGVTLTLQDKTGGDLNKFFNVTQDF 723

Query: 511  MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
            +  + +  ++K         +      + +   +       + +      +  ++    N
Sbjct: 724  LKELNQRPEVKQAMTTYNPNYPQYMVDVDVAKTKQAGISPAVVLSTLQGYLGGMYASNFN 783

Query: 571  ----------YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                                  +        S   S +      +  +   +  +  L  
Sbjct: 784  AYGKLFRVMIQAAPTDRLRPDQLSNIYVRTASGQMSPVSEYCTLNRVYGPSNIARFNLYT 843

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +     ++++                        E        ++ +   +
Sbjct: 844  AINVSVTPNSNYSSGQVMQAIAEVSKNTMPQGYGYEYSGLTRSEAESSNTTAIVFALCLV 903

Query: 681  LIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             +Y+ +      +   L  I ++   +     F  LFG   ++    +++ LIG    + 
Sbjct: 904  FVYLILSAQYESYILPLSVILSIPFGLAGAFLFTMLFGHSNDIYMQISLIMLIGLLAKNA 963

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VI 794
            +++     +      T ++ +          L   + TS+A  I +LP+    G      
Sbjct: 964  ILIVQFALE---RRRTGMAIKYSAILGAAARLRPILMTSLAMVIGLLPLMFASGVGKNGN 1020

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +       G+++     IF+   + +     + K
Sbjct: 1021 QTLGAAAVGGMLIGTLCQIFVVPALFVAFQWLQEK 1055



 Score = 41.2 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 94/260 (36%), Gaps = 15/260 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + + ++   +   ++   +      +            V            T + 
Sbjct: 243 TEFENIMLKSSLTGETLRLKDVAKVELGALMYNVKLINNGQPAVMGMVNQIAGSNATDIA 302

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKW 690
           E VK  + E            +    +  L          + + ++ + +++YI+++   
Sbjct: 303 EAVKSALEEASKSFPPGMKYTIEQDTTEFLFASIEEVIMTLFITLALVFIVVYIFLQ-DI 361

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L  +  + + +  T  F  +FG   NL  ++A+L  I   V+D +VV + +   +  
Sbjct: 362 RSTLIPMIAVPVALIGTFFFLWVFGFSINLLVLSALLLAIAIVVDDAIVVVEAVHAKLDQ 421

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFIS--VLPMAVWGGSV---IGSFAIPMAFGI 805
              S     +   ++NE  G  +  S+   ++   +P++  GG+       F + MA  I
Sbjct: 422 GYKSAMTASI--DAMNEISGAII--SITLVMAAVFVPVSFLGGTSGTFYREFGVTMALSI 477

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +++ ++  +      
Sbjct: 478 VISAINALTLSPALCAIFLK 497


>gi|149174305|ref|ZP_01852932.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Planctomyces maris DSM 8797]
 gi|148846850|gb|EDL61186.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Planctomyces maris DSM 8797]
          Length = 1065

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/592 (12%), Positives = 177/592 (29%), Gaps = 45/592 (7%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L   +   GL+       P+  +DRFP+    +                       V  
Sbjct: 1   MLIMALVVAGLVA-----FPELGVDRFPNMDMPSIY---------VRTNYPGAASQEVES 46

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    ++  + +          R  ++ + ++F  +R  +     V   + GV + L  
Sbjct: 47  EVSAVIEDAVATVAGIDELRSISRDGRSFVIITFNLNRNVDAATQDVRDAVSGVMNLLPP 106

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
           +    ++     +   I+    +  +      E  +   R   + I  S    +   +  
Sbjct: 107 NIDPPIVQKRDLESSPIMTLAVSGPRTSR---ELFLFADRYVKNVIESSPGVGEVQIAGA 163

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
               +  + D  RL     +  ++    V  N    G                       
Sbjct: 164 ADRAVKVDIDADRLAAYQMSILQVRDALVRQNTEVPGGRLDQ------------------ 205

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
             G                   ++  D +            +      V     L     
Sbjct: 206 --GFRERSLRTMGRVADSDQFPNLVVDTVNGTPVRLADLGTVIDDTKEVRTIARLNQKPA 263

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                  ++  +    +E    +    +          + +      + +    +     
Sbjct: 264 VVLEIQKQSGENTVAVVEGIKKMLPRSQELLPDDVKVSIVQDQSRYIVTALHELEQHLIS 323

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + L  I + + +   +  ++A  +I  ++I T A + L G TL   ++  +VL +G+ +
Sbjct: 324 GSILACITVLIFMRSWRSTIIASVAIPASIISTFAFMKLFGFTLNNVTMLALVLMVGVVI 383

Query: 429 DSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR- 486
           D  I+V E +      K  S   +  +G       +  + I+ +I  + + F      R 
Sbjct: 384 DDAIVVLENVFHCIEEKGMSPREAAIIGTKEIGLAVLATTISLVIVFLPVSFLSSVTGRL 443

Query: 487 --GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
              F +T  ++IL+SM  + ++   M   ++R ++         S F+ I +   +  ++
Sbjct: 444 LFQFGVTATVAILVSMLVSFTLTPMMCSKLLRPEEPNPDGPGSRSGFYHIIESSYLWILK 503

Query: 545 ----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                R+  + IS+   + +  L      +Y        +  +        +
Sbjct: 504 LSLRFRWLVLLISVGVILSNYPLYQLVKQDYIPLNVDESEFEIRLEARQGAT 555



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 81/195 (41%), Gaps = 9/195 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               ++L   ++ + + V +S +Q+          EL +  I G I++ I +LI++    
Sbjct: 281 EGIKKMLPRSQELLPDDVKVSIVQDQSRYIVTALHELEQHLISGSILACITVLIFM---R 337

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   + A   +   I  T  F  LFG   N   + A++ ++G  ++D +VV + +    
Sbjct: 338 SWRSTIIASVAIPASIISTFAFMKLFGFTLNNVTMLALVLMVGVVIDDAIVVLENVF--H 395

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +    +S R+       E     + T+++  I  LP++         +  F +     I
Sbjct: 396 CIEEKGMSPREAAIIGTKEIGLAVLATTISLVIVFLPVSFLSSVTGRLLFQFGVTATVAI 455

Query: 806 VVAASSSIFIAAPIL 820
           +V+   S F   P++
Sbjct: 456 LVSMLVS-FTLTPMM 469



 Score = 45.1 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 65/195 (33%), Gaps = 8/195 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +  ++ ++       A    +  +     EI          + G +     +      +
Sbjct: 818  NRQRMISVRANMASGYALGDGIAAMNAAAEEIGIPDGYNTMVLGGGRELERTLGDFGWTM 877

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++S I M I +  +F+     L  + +L L +   L      G   NL +   +L L G 
Sbjct: 878  VLSFIFMYIVLAAQFENLVHPLVILLSLPLAVPFGLLSLHWGGETLNLYSALGILVLFGV 937

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 ++  D       L          I ++  + L   + T+++    ++P+ +    
Sbjct: 938  VKKAAILQIDH---TNALQLQGFPRYQAILQANRDRLRPILMTTLSFVAGLIPLLIATGP 994

Query: 790  GGSVIGSFAIPMAFG 804
            G     S A  +A G
Sbjct: 995  GAEERRSIA-VLAVG 1008


>gi|89891869|ref|ZP_01203370.1| AcrB/AcrD family multidrug resistance protein [Flavobacteria
           bacterium BBFL7]
 gi|89515774|gb|EAS18575.1| AcrB/AcrD family multidrug resistance protein [Flavobacteria
           bacterium BBFL7]
          Length = 1045

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 58/521 (11%), Positives = 144/521 (27%), Gaps = 43/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++           ++ +P   P               + +  + 
Sbjct: 8   RPVLSTVISIIIVMLGVISI-----TTLPIEEYPDIAPPT-------------IKVTANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  + +     +   +   EG+   +         +IT+ F      +  A  V  
Sbjct: 50  TGANAETVLESVIVPIEEQINGVEGMTYITSTASNTGTAEITVYFDQETDADIAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  +VT  ++  +++      +     A      +    I  +   
Sbjct: 110 RVARATPLLPSEVTQTGVVTQKQETSALMFISMYSESENYDATFIQNYLKINVIPAMQRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                     +    +    +P +L       + ++      N        G     + +
Sbjct: 170 SGVGDVSVFSQQDYAMRIWLNPEKLASYNLIPSDITAALAEQNLEAAAGSLGE---NNGE 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +                            +                 I       
Sbjct: 227 SFSYALTYSGRFKDEAQYSD-------------IVIKALGNGEFLRLKDVATIELDAQSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +    IE        ++A         V          
Sbjct: 274 ASNAMSMGNPAVFMGIFQTKGSNAQEIIENIKSTLEDVKADLPEGLDIFVPYDTSLFLNA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ +++I T   L++ G ++ L ++
Sbjct: 334 SIDKVITTLLEAFLLVFLVVFIFLQDFRSTLIPAIAVPVSIIGTFFFLNVFGYSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +  +   +   +     +     I    +      + 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHAKMDEGEHNPKKATITAMNEISGAIISITLVMAAVFIP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F  G        F +T+ ++ILIS   A+++  A+   +
Sbjct: 454 VTFVTGPTGVFYEQFGVTLIIAILISAVNALTLSPALCALL 494



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 87/245 (35%), Gaps = 6/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V +     Q    +  +      F+   Q +  ++      ++   + +   +P     
Sbjct: 262 DVATIELDAQSYASNAMSMGNPAVFMGIFQTKGSNAQEIIENIKSTLEDVKADLPEGLDI 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                        I K I  ++ + + + + ++I    +   L     + + I  T  F 
Sbjct: 322 FVPYDTSLFLNASIDKVITTLLEAFLLVFLVVFIFLQDFRSTLIPAIAVPVSIIGTFFFL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +FG   NL  + A++  IG  V+D +VV + +   M       + +     ++NE  G 
Sbjct: 382 NVFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHAKMDEGEH--NPKKATITAMNEISGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++      +P+    G        F + +   I+++A +++ ++  +   +     
Sbjct: 440 IISITLVMAAVFIPVTFVTGPTGVFYEQFGVTLIIAILISAVNALTLSPALCALLLKEHK 499

Query: 829 KNARI 833
            +  +
Sbjct: 500 DDEEL 504



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 55/166 (33%), Gaps = 6/166 (3%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +   + ++       +       +      I +L   +          G+E N+    A+
Sbjct: 871  QTTFIFILSILFVYFLLSAQYESYLLPFAVIFSLPFGVFGAYISTKFLGLENNIYFQIAL 930

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG    + +++ +     +       S  D         L   + TS A  + ++P+
Sbjct: 931  IMLIGLLAKNAILIVEFA---LARRKNGESIVDAAIHGAKSRLRPILMTSFAFILGLMPL 987

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            A+    G     S     A G+++     +F+   + +     + K
Sbjct: 988  ALAKGVGSEGNNSIGSGAAGGMLIGTILGVFVIPILFILFQWLQEK 1033


>gi|46201933|ref|ZP_00208308.1| COG0341: Preprotein translocase subunit SecF [Magnetospirillum
           magnetotacticum MS-1]
          Length = 165

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/148 (42%), Positives = 101/148 (68%), Gaps = 1/148 (0%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +Y+W RF+W F +GA+ +   D+  T G F++ G+EFNLT VAA+LT+ GYSVND VV Y
Sbjct: 1   MYVWFRFEWQFGVGALVSTFHDVITTFGLFSITGLEFNLTTVAAILTIAGYSVNDTVVEY 60

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           DR+R+N++ +  S+S  DL++ ++NETL R++ T    F++VL +   GG V+  F+I M
Sbjct: 61  DRVRENLRKF-KSMSLYDLLNLAVNETLARTILTVSTVFVTVLALLFVGGEVLRGFSIAM 119

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +G+++   SSI++A P+L++      K
Sbjct: 120 LWGLIIGTFSSIYVAMPMLIYFNLRTGK 147


>gi|226228496|ref|YP_002762602.1| multidrug resistance protein [Gemmatimonas aurantiaca T-27]
 gi|226091687|dbj|BAH40132.1| multidrug resistance protein [Gemmatimonas aurantiaca T-27]
          Length = 1054

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 74/688 (10%), Positives = 180/688 (26%), Gaps = 44/688 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+    +   GL+      + Q   D FP   P   +         + +V    
Sbjct: 9   KRPLLTVVAMLALVGFGLVA-----MSQLQTDEFPEVQPPVVL---------TTVVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E    +          R    +I   F  S+  +     +   +  
Sbjct: 55  SPEQVEREVLEPIEEAIQSIAGVKSINGEARDGYAQIVTQFVFSKDLQEATQDIRDAIST 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++ +L      +  I+      + +     + ++        ++       
Sbjct: 115 KRQDLPQEIEEPILRKFNPTDAPIMTLSLWSNTITPA--QLTLLADPGITRELRAIPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +  +L    DP RL     +  ++                G   +     N  
Sbjct: 173 DVAITGAVKRELTVNLDPQRLLAAGVSVPQVVGALQA----------GNLAVPVGRLNGA 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L E  + + G   N                +   E   R             +       
Sbjct: 223 LDERTIRLQGRLNNPQDFMQ----------LVVSERNGRIVRLGDVATAADGIEEQRTMA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 S              LR          V +        S   
Sbjct: 273 LFNGRDAVGLEIKKTKGYSTTTVAAAILKKVESLRPTLPQGVQFEVVKDKGERVTHSVDN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+F+ +   +  ++   ++ ++V+ +   +   G TL   S+ G+ 
Sbjct: 333 VVEALIEGAALTVLVVFLFLNSWRSTVITGLALPVSVMASFVAVWGFGFTLNTMSLLGLS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+ +D  I+V E I       +  + +   G       +  +  + +   V + F  
Sbjct: 393 LAIGILIDDAIVVRENIVRHVEMGKDHYTAAREGTDEIGLAVAATTFSIVAVFVPIAFLE 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  S+L+S+F + S+   +  +       +        +     +  
Sbjct: 453 GEAGQWFKPFALTIACSVLVSLFVSFSLDPMLSAYWPDPHLEEHQKNWLTKQLDKFNNWF 512

Query: 539 AIQFMRARFWGVG-----ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  R           S++    S  +        G+       L   A   +++  
Sbjct: 513 NGLASGYRRLVGWALDHPKSMVMLAVSSFVFALAMPAMGLVGGSFFPLEDNAELMINVES 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                       ++                    +         +     ++   +    
Sbjct: 573 PPGANLDYLRQKVNETLAITADTSRYPEVAYSFVTAGGASGAVDLGSIYLKLYKKADRLK 632

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAML 681
                 +     +RK +  +  + +++ 
Sbjct: 633 KGQRDAETLGAAVRKDVEQIGGATVSVF 660



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 81/217 (37%), Gaps = 6/217 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V          + T V++ + +K  +I     +  +     +   E+     + + 
Sbjct: 811  NRDNVIKVQANVAGRSLTEVMDDLTRKTKDIALPPGVTFSSGGQVEQQNEVFSSIFIALG 870

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++   M + + ++F  +   +  + +L L +   +G  A+ G   NL ++  V+ L G  
Sbjct: 871  VAVALMYMILVVQFGSFLDPIAILISLPLSLIGVMGALAITGNTINLMSLIGVILLCGIV 930

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ D  +         +  R+ + ++    L   + T+ A    ++P+A+    G
Sbjct: 931  AKNAILLIDFAK--WARERNGMPLREALIEAGAIRLRPILMTTFALIAGMIPVALGRGEG 988

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                    + +  G++ +   ++ +         + R
Sbjct: 989  AQFRAPLGVAVIGGVITSTVLTLLVIPTFYEIFDNMR 1025



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 80/256 (31%), Gaps = 9/256 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                 + +     R V L  V +  + ++           +   L   + +   +    
Sbjct: 237 PQDFMQLVVSERNGRIVRLGDVATAADGIEEQRTMALFNGRDAVGLEIKKTKGYSTTTVA 296

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWY 691
             +    + +   +P            +     +   +  +I  +A+ +L+       W 
Sbjct: 297 AAILKKVESLRPTLPQGVQFEVVKDKGERVTHSVDNVVEALIEGAALTVLVVFLFLNSWR 356

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +     L + +  +      FG   N  ++  +   IG  ++D +VV    R+N+  +
Sbjct: 357 STVITGLALPVSVMASFVAVWGFGFTLNTMSLLGLSLAIGILIDDAIVV----RENIVRH 412

Query: 752 -TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
                       +  +E       T+ +     +P+A   G        FA+ +A  ++V
Sbjct: 413 VEMGKDHYTAAREGTDEIGLAVAATTFSIVAVFVPIAFLEGEAGQWFKPFALTIACSVLV 472

Query: 808 AASSSIFIAAPILLFI 823
           +   S  +   +  + 
Sbjct: 473 SLFVSFSLDPMLSAYW 488


>gi|17549420|ref|NP_522760.1| drug efflux transmembrane protein [Ralstonia solanacearum GMI1000]
 gi|17431673|emb|CAD18350.1| probable drug efflux transmembrane protein [Ralstonia solanacearum
           GMI1000]
          Length = 1033

 Score =  161 bits (407), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/673 (11%), Positives = 186/673 (27%), Gaps = 47/673 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+            +   P                  +  L    
Sbjct: 10  RPVATALLTIGVALAGIAA-----FNLLPVSPLPQVDFPTI---------SVNASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               ++TL F  SR  +  A  V   +   
Sbjct: 56  PETMAATVATPLERSLGRIAGITEMTSQSALGSTRVTLQFDLSRDIDGAARDVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L      N          + ++    +        E           ++       Q
Sbjct: 116 RSLLPSGLPSNPTYRKVNPADAPIMI-LGLTSDTKSRGELYDAASTILAQKLSQITGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P+ L +   +T  +       N +K   M               
Sbjct: 175 VNIGGASLPAVRVELNPTALNKYGISTETVRTVITATNANKPKGMLEA------------ 222

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G  +    AN   +  +    +                 +   +  + +   
Sbjct: 223 --------GNRVWTLYANDQARHAEEYKPLIIAYRNGAPVRLSDVAEVTDSVQDIRNYGS 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I + +   +   T++    +   LR          V          S    
Sbjct: 275 ANGKPSVLLIINRQPGANIIDTVDRINAILPYLRNTIPAQINLDVMMDRTPTIRASLRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV++V+++ +   +  L+   ++ +++I T  ++ L G +L   S+  + +
Sbjct: 335 ERTLMLSIGLVIMVVYLFLRNLRATLIPSVAVPVSLIGTFGVMYLCGYSLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +            +   G      T+   + + +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENVSRHIENGMRPMQAALKGAREVGFTVVSMSFSLIAVFIPLLMMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFF 532
             G   R FA+T+ ++IL+S+  +++    M   +             +  +        
Sbjct: 455 IVGRLFREFAVTLSVAILVSLAISLTTTPMMCARLLKPASEEEPGWFHRKTEGFFNLLLD 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +A     +    + +     +     +      +     G +   + A++ +   
Sbjct: 515 GYRHSLAWALRHSWLTLLILLATVCLNGYLYVVVPKGFFPQQDVGRLMGFIQADQAISFQ 574

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +R+ L  +    I  Q+   E         Q        ++  + ++K++    ++ ++
Sbjct: 575 AMRTKL--VDFIHIVQQDPAVENVVGFTGGSQINSGQMFIQLKPLAERKLSADQVINRLR 632

Query: 653 NTEIVGPKISREL 665
                 P  +  L
Sbjct: 633 GKLAREPGANLFL 645



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 89/245 (36%), Gaps = 10/245 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV LS V    +S+Q               L+  +    + +     +  +  
Sbjct: 246 IAYRNGAPVRLSDVAEVTDSVQDIRNYGSANGKPSVLLIINRQPGANIIDTVDRINAILP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK--GIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            +   +P     +  +      R  +R     + + I  + M++Y+++R      L    
Sbjct: 306 YLRNTIPAQINLDVMMDRTPTIRASLRDVERTLMLSIGLVIMVVYLFLR-NLRATLIPSV 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T G   L G   +  ++ A+    G+ V+D +VV + +    +     +   
Sbjct: 365 AVPVSLIGTFGVMYLCGYSLDNLSLMALTVATGFVVDDAIVVLENV---SRHIENGMRPM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
               K   E     V  S +     +P+ + GG V      FA+ ++  I+V+ + S+  
Sbjct: 422 QAALKGAREVGFTVVSMSFSLIAVFIPLLMMGGIVGRLFREFAVTLSVAILVSLAISL-T 480

Query: 816 AAPIL 820
             P++
Sbjct: 481 TTPMM 485



 Score = 44.7 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 89/233 (38%), Gaps = 6/233 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S        +         +     L +      + +   + ++  +  I   +T+  + 
Sbjct: 780  STFSHYGPTNTPLAVNHQGQFAASTLSFNLAPGASLSAATQQIQDAMNRIGVPTTVHGSF 839

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++ +    V ++ + I + I + + ++ +   +  ++TL       L    + 
Sbjct: 840  QGTARAFQDSLSSQPVLILFALITIYIVLGVLYESYVHPITILSTLPSAGVGALLALIVT 899

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +F++ A+  V+ LIG    + +++ D   +     +  +S  D I  +        + 
Sbjct: 900  DTDFSVIALIGVILLIGIVKKNAIMMIDFALE--AERSQGMSPADAIFHACVLRFRPILM 957

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            T+MAA +  LP+A+    G  +     I +  G++V+   +++    + L + 
Sbjct: 958  TTMAALLGALPLALGHGDGAELRQPLGISIVGGLLVSQILTLYTTPVVYLALD 1010


>gi|254431632|ref|ZP_05045335.1| protein-export membrane protein SecD [Cyanobium sp. PCC 7001]
 gi|197626085|gb|EDY38644.1| protein-export membrane protein SecD [Cyanobium sp. PCC 7001]
          Length = 501

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 124/491 (25%), Positives = 221/491 (45%), Gaps = 43/491 (8%)

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVN----GFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97
            + LGLDLRGGS L L+V     +       L+   + L   +   G+   +++ +  ++
Sbjct: 26  PLQLGLDLRGGSQLTLQVMPAGAIKRVDQEQLEAVKEVLERRINGLGVAESTLQTVGTDQ 85

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           + L     +     A  +                                          
Sbjct: 86  LVLQLPGEQDPSRAARVLGSTALLEFR--------------------------AQRAGTE 119

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
             ++  +++ RQ    +G++ +    LG+     ++     P+         A +    V
Sbjct: 120 QEMQGLLQLKRQAEAVLGLARARQAALGNGETPPEVAEASFPAE-----QLAAALRQLGV 174

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
              +           L   +     + +    +G  L  A            V +SF + 
Sbjct: 175 EVPDGASEADQLELLLDTVNTRIVELYEPAAFTGKELVTAGRQQQQSGSGWEVTLSFTQT 234

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN-------QAIPSGKAQISGNFTIETAGI 330
           G  +F  +T++  G    + +     +    +         I  G A I+GNF+ E A  
Sbjct: 235 GGEQFARLTKEIAGSGRLLGIVLDGRSISEASVGPEFQAAGITGGSASITGNFSAEEARD 294

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           L   LR GSLP+ + +VE R VG  LG+D+I     A ++GL L+ +FM+++Y   G+VA
Sbjct: 295 LEVQLRGGSLPLPVRVVEVRTVGPSLGADNIRTSLVAALSGLALVAVFMVLVYRLAGVVA 354

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ L  +  LAL +L+  TLTLP IAG +L +G+AVD+N+L+ ERI++E R   ++  
Sbjct: 355 VVALSLYALFNLALYALIPVTLTLPGIAGFILSLGMAVDANVLIFERIKDELRSGNTLIR 414

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           S+D GF+ A+S+I D  +T LI+ V LF  G G V+GFA+T+G+ +L+S+F+A++  R +
Sbjct: 415 SIDTGFNLAFSSILDGQLTTLISCVALFALGTGFVKGFAVTLGIGVLLSLFSALTCTRTL 474

Query: 511 MIFIIRYKKMK 521
           +  ++ Y  ++
Sbjct: 475 LRLLMSYPALR 485



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 73/166 (43%), Gaps = 4/166 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR  +V  +     + +++ + ++    + A+  L L     L  +AL  + 
Sbjct: 317 GPSLGADNIRTSLVAALSGLALVAVFMVLVYRL-AGVVAVVALSLYALFNLALYALIPVT 375

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  +G +V+  V++++R++  ++   +  +    ID   N      +   +
Sbjct: 376 LTLPGIAGFILSLGMAVDANVLIFERIKDELR---SGNTLIRSIDTGFNLAFSSILDGQL 432

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              IS + +   G   +  FA+ +  G++++  S++     +L  +
Sbjct: 433 TTLISCVALFALGTGFVKGFAVTLGIGVLLSLFSALTCTRTLLRLL 478


>gi|316933254|ref|YP_004108236.1| acriflavin resistance protein [Rhodopseudomonas palustris DX-1]
 gi|315600968|gb|ADU43503.1| acriflavin resistance protein [Rhodopseudomonas palustris DX-1]
          Length = 1044

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 63/516 (12%), Positives = 144/516 (27%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I  +GL+       P   +   P                     L   
Sbjct: 10  RYPIATSLLMAGILFLGLIA-----YPALPVAPLPQVDFPTIQ---------ISASLPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       +T+ F  +R  +  A+ V   +  
Sbjct: 56  SPETMASSVATPLERQLAQIPGVSQMTSTSSLGSTAVTIQFDLNRNIDAAANDVQAAINA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              + +L   +           S     +   QI       
Sbjct: 116 AGGQLPKNLPNPPTYRKVNPADAPILI-LSATSDTLPLTTVSDNADAKIAQQISQITGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  + DP++L     +  ++     +                 +     
Sbjct: 175 QVFIGGQQKPAIRIQVDPAKLMAKGLSLEEVRSQIAITTVDSPKGTLDAPTKSYTIYAND 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +  +                      D+                             
Sbjct: 235 QLTESKD--------------------WNDVILAYRNGGPLRIRDIGRAVTGPEDAKTAA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   +   +   T++        L AG  P     V          +   
Sbjct: 275 WANGKRGVFLVVFKQPGANVIDTVDHIKAELPRLVAGIPPAIKVEVMSDRTTTIRAAVED 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ L ++   AL+   G TL   S+  + 
Sbjct: 335 VQFTLMLTIALVVMVIFLFLRSFWATIIPSVTVPLALLGACALMWAAGYTLDNLSLMALT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I     + +  F +   G      TI   +I+ +   + L F G
Sbjct: 395 ISVGFVVDDAIVMLENIARHVEEGEKPFAAALKGAREIGFTIVSISISLVAVLIPLLFMG 454

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R FA+T+ ++I +SM  ++++   +    
Sbjct: 455 GIIGRLFREFAVTLAMAIGVSMLVSLTLTPMLASRF 490



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 95/280 (33%), Gaps = 12/280 (4%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                S   ++ +    +T   N  +         +LA R      +R    ++   + +
Sbjct: 211 ITTVDSPKGTLDAPTKSYTIYANDQLTESKDWNDVILAYRNGGPLRIRDIGRAVTGPEDA 270

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI- 666
                      V L             ++ +K ++  +V          V    +  +  
Sbjct: 271 KTAAWANGKRGVFLVVFKQPGANVIDTVDHIKAELPRLVAGIPPAIKVEVMSDRTTTIRA 330

Query: 667 ----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
                +  + + I+ + M+I++++R  ++  +    T+ L +          G   +  +
Sbjct: 331 AVEDVQFTLMLTIALVVMVIFLFLR-SFWATIIPSVTVPLALLGACALMWAAGYTLDNLS 389

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+   +G+ V+D +V+ + +    +             K   E     V  S++    
Sbjct: 390 LMALTISVGFVVDDAIVMLENI---ARHVEEGEKPFAAALKGAREIGFTIVSISISLVAV 446

Query: 783 VLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++P+   GG +      FA+ +A  I V+   S+ +   +
Sbjct: 447 LIPLLFMGGIIGRLFREFAVTLAMAIGVSMLVSLTLTPML 486



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 94/254 (37%), Gaps = 6/254 (2%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                Q+ V +    D   + +  +   +           +     + +     VA     
Sbjct: 765  DTLNQIYVKSPTTGDQVPLSTFAKWTTVPVRPLSISHQGQFPATTISFNLAQGVALGEAT 824

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694
              V+  + EI    T+  +     +  ++ +    + +I + + + + + I ++ +   L
Sbjct: 825  AAVQAAMAEIGAPPTLIGSFQGTAQAFQQSLSTVPLLIIAALVVVYLILGILYESYIHPL 884

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
              ++TL       L    LFG +F+L A+  ++ LIG    + +++ D            
Sbjct: 885  TILSTLPSAGVGALAMLMLFGFDFSLIALIGIILLIGIVKKNGIMMVD--FAITAERDEH 942

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASS 811
            +     I K+        + T+MAA +  +P+ +    G  +       M  G++V+ + 
Sbjct: 943  LDPEQAIRKAALLRFRPIMMTTMAAMLGGVPLMLGTGTGSEIRQPLGYAMVGGLLVSQAL 1002

Query: 812  SIFIAAPILLFIYD 825
            ++F    + L++  
Sbjct: 1003 TLFTTPVVYLYLDR 1016


>gi|255011688|ref|ZP_05283814.1| putative transmembrane Acr-type transport protein [Bacteroides
           fragilis 3_1_12]
 gi|313149524|ref|ZP_07811717.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313138291|gb|EFR55651.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1052

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 67/528 (12%), Positives = 159/528 (30%), Gaps = 40/528 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEYGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     T   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPNKLEAYNLTIETISSIIGAENKNIPGGNFDIGNETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  ++  + +                            +      +   +       
Sbjct: 232 EFDDSRQLEDVVVGSY--------------------NGANIYLRDVARVVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVKGAMIVVQKQSGANSVDISKKVAEALPKLQKNLPSDVKLGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LAETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAVTGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           G +    +     M   + IS   A+S+   +   ++R +K +S    
Sbjct: 452 GMSGVMFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKQSKTFK 499



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 90/244 (36%), Gaps = 7/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   +V  +    +SV  ++ +     K+ + +P     
Sbjct: 256 DVARVVDTVEERAQETYNNGVKGAMIVVQKQSGANSVDISKKVAEALPKLQKNLPSDVKL 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +         I      V+ + + ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GVIVDTSDNILNTIDSLAETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AVTGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++       P+  V G  G +       M   + ++  +++ +   +   +   + 
Sbjct: 433 VIASTLTMIAVFFPLTMVSGMSGVMFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQK 492

Query: 829 KNAR 832
           K ++
Sbjct: 493 KQSK 496



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 76/241 (31%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L  +            ++  +V +            V           +P        
Sbjct: 793  KELGKVVERFAPPTIERKDRERIVTVSAVISGEALGNVVNAGNAIIDKMDIPSDVTIQVA 852

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + ++I  + + I +  +F+   +    + +L    +  L      
Sbjct: 853  GSYEDQQDSFRDLGTLAILI-VVLVFIVMAAQFESLTYPFIIMFSLPFAFSGVLMALFFT 911

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                ++ ++   + LIG  V + +V+ D +          ++  + +  +    L   + 
Sbjct: 912  KSTLSVMSLLGAIMLIGIVVKNGIVLIDYI---TLCRERGLAVLNSVVTAGKSRLRPVLM 968

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+    + ++PMA+ GG    +    AI +  G+ V+   ++ +   +         K+ 
Sbjct: 969  TTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTVSTILTLILIPTLYCVFAGTGIKHQ 1028

Query: 832  R 832
            R
Sbjct: 1029 R 1029


>gi|255038880|ref|YP_003089501.1| acriflavin resistance protein [Dyadobacter fermentans DSM 18053]
 gi|254951636|gb|ACT96336.1| acriflavin resistance protein [Dyadobacter fermentans DSM 18053]
          Length = 1029

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 76/686 (11%), Positives = 185/686 (26%), Gaps = 45/686 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V++  +I   G++           L  +P+  P                    
Sbjct: 8   LKRPVLAVVMNLLIILFGVV-----GYNFLSLRDYPAIDPPIV---------NVRTSYTG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D +   +    ++  + +        S +   + IT+ F      E  A+ V   + 
Sbjct: 54  ANADIIESQITEPLEKSINGIPGIKSISSSSQIGSSNITVEFNLESDLEGAANDVRDKVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  D     +V+  +     +L    +       +E S          +   +  
Sbjct: 114 QALRNLPQDIDAPPVVSKADANSDFILL-LAVQSPSKGLLELSEYAENVLQQSLQTIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                  +    +    +P ++     +   ++      N               +    
Sbjct: 173 SAINIFGQKRYAMRIWLNPDQMSSYNISFNDITTTLASENVELPAGKIYGDNTELTIRTM 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++ + E                      D+      +          +          
Sbjct: 233 GRLKTEKEF--------------------NDLVIRNDSSGIVRLGNVAKVELGPENEEQS 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +     +        ++  +       V   N      S  
Sbjct: 273 WKYNGMYAVGLAVIPQPGANYVQISDEFNKRLEEIQRSNKSDITFSVLIDNTRLVRQSIK 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  I   LV+IV+          +     I ++++ T  ++ + G ++ + ++ GI
Sbjct: 333 EVEETLIIAFSLVVIVILFFFRNLLVAVRPLIDIPISLVATFFVMYMCGFSINILTLLGI 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  GL VD  I+V E I  +      +  +   G    +  +  +++T  +  + + F 
Sbjct: 393 VLATGLVVDDGIVVTENIFRKLESGLPIRQAALEGSREIFFAVISTSLTLAVVFLPVIFL 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F I +  ++LIS F +++I   + + + R         N    FF   + 
Sbjct: 453 EGFVGSLFREFGIVVASAVLISAFVSLTITPVLNVVLNRKDSGHGWFYNKTEPFFTGMEN 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLN-------YGIDFKGGIQLGVLANRPVD 590
              + +R       +S +  +    +++    N                 L        D
Sbjct: 513 GYNRMLRGFMKARWVSWVLVVACGAMIWFTYTNLQSELAPMEDRNSIRFNLSAPEGTSFD 572

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                S+  S  + D   +                     +  +++  ++K ++      
Sbjct: 573 QMQQVSDQLSNFLNDSIPEKAFTFSATPGFGGGGVNSGTGRIGLVDAGERKRSQNEIAQD 632

Query: 651 IQNTEIVGPKISRELIRKGIVGVIIS 676
           I               ++  + V I 
Sbjct: 633 INKKLSRFNDARIFATQEQTISVGIG 658



 Score = 92.4 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 66/158 (41%), Gaps = 7/158 (4%)

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +II+   ++I I   F+    A+  +  + + +  T     + G   N+  +  ++   G
Sbjct: 338 LIIAFSLVVIVILFFFRNLLVAVRPLIDIPISLVATFFVMYMCGFSINILTLLGIVLATG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
             V+D +VV + +    +   + +  R    +   E     + TS+   +  LP+     
Sbjct: 398 LVVDDGIVVTENI---FRKLESGLPIRQAALEGSREIFFAVISTSLTLAVVFLPVIFLEG 454

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           + GS+   F I +A  ++++A  S+ I   + + +   
Sbjct: 455 FVGSLFREFGIVVASAVLISAFVSLTITPVLNVVLNRK 492



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 48/119 (40%), Gaps = 6/119 (5%)

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            FG+  N+ +   ++ LIG    + +++ +      +     +       +S  + L   +
Sbjct: 901  FGLTINIFSQIGMIMLIGLVTKNGILIVEFAN---QKREQGMGRTAAAIESATQRLRPIL 957

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             TS+A     LP+A+      +      + +  G++ +   ++F+   I  FI   + K
Sbjct: 958  MTSLATAFGALPIALSLGAAATSRVPLGVVIVGGLMFSLILTLFVIPAIYTFISPKKHK 1016


>gi|207725053|ref|YP_002255450.1| transporter protein [Ralstonia solanacearum MolK2]
 gi|206590283|emb|CAQ37244.1| transporter protein [Ralstonia solanacearum MolK2]
          Length = 1034

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 80/669 (11%), Positives = 190/669 (28%), Gaps = 41/669 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+ + ++   GL+        +  +  FP                     LE  
Sbjct: 9   RNPVPAVLCFILLTLFGLI-----GFHKLQVQDFPDMDLPTI---------SISASLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L K       +      I++SF   +  +    +V   + G
Sbjct: 55  APSQLENEVARKIEDKLTSLSKLDHITTKITDGAVSISVSFKLEKDPQTALSEVRNAVDG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +     +  +     +++    +   +     + S  +       +   +   
Sbjct: 115 ARASLPSEMAAPTVSKSDAANSALLTYTASSATL--DEQDLSWFVDNDLAKALLSVKGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I  ++  + +P+ +  L  T   +S         + G    +   R S     
Sbjct: 173 KVERIGGIDREVHVDLNPALMAGLGLTAETVSSQLTAMQRERSGGQGDIGGQRQSARTLI 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +++                     ++      RR        +    A      
Sbjct: 233 GVGSAADVAA--------------------LTLATGDGRRVRLDQIARVTDGAADRASYA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +     +     S    +       A        ++L       V     +   
Sbjct: 273 YLDGKPVVGVQITRAKGNSDVTVLHDVRNAIATFAGAHPEVRLVEAS-NTVSPIEDNYEG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L + V++  +  G+  LV+  ++ L++I T  ++ L G +L   ++  + 
Sbjct: 332 SMSMLIEGALLAIAVVWWFLRDGRATLVSAAALPLSIIPTFGVIYLAGYSLNTITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  ++ + +           +  +    +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIERHLRMGKTPYQAAMEAADEIGLAVIATTFALVAVFLPTAFMS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T  +++L+S+  A  +   M  +++      +   +PL   +L     
Sbjct: 452 GIPGLIFRQFGVTASVAVLMSLLVARLLTPMMAAYLM-KATGHAERDSPLMTRYLRWVGG 510

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +          G+ +L S+     L T         +  + L +     ++ S   +  
Sbjct: 511 GLDKRGRTMLAAGLMLLLSLAMAAALKTGFFPAQDKAQTQVTLELTPGSTLEQSRAVALQ 570

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
               I  +                  P    + T  +      +  +           V 
Sbjct: 571 AEALIRRLPEVKGVFSTVGSASDSGNPAAGASSTADVRTSTLVVDLVARGERKSKQSAVE 630

Query: 659 PKISRELIR 667
             I  +L  
Sbjct: 631 EAIRHQLRD 639



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 77/229 (33%), Gaps = 8/229 (3%)

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              D +   +   K  +     +   +   T + ++     T       ++  E      
Sbjct: 264 GAADRASYAYLDGKPVVGVQITRAKGNSDVTVLHDVRNAIATFAGAHPEVRLVEASNTVS 323

Query: 662 SRELIRKGIVGVII--SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
             E   +G + ++I  + +A+ +  W        L +   L L I  T G   L G   N
Sbjct: 324 PIEDNYEGSMSMLIEGALLAIAVVWWFLRDGRATLVSAAALPLSIIPTFGVIYLAGYSLN 383

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
              + A+  ++G  V+D +V  + +    +      +      ++ +E     + T+ A 
Sbjct: 384 TITLLALSLVVGILVDDAIVEIENI---ERHLRMGKTPYQAAMEAADEIGLAVIATTFAL 440

Query: 780 FISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               LP A   G        F +  +  ++++   +  +   +  ++  
Sbjct: 441 VAVFLPTAFMSGIPGLIFRQFGVTASVAVLMSLLVARLLTPMMAAYLMK 489



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 4/158 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
              +    +   EL +   + + I    +   + + F  +      +  L L +   L  
Sbjct: 831 HQVQQGELQNMSELFQSFGLAMAIGVFCVYAVLVLLFHDFLQPATILCALPLSLGGALLS 890

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +  + F++ A+  +L L+G    + +++ +     M      +S    +  + ++   
Sbjct: 891 LLITRMSFSMPALIGLLMLMGIVTKNSILLVE--YAIMARREHGLSRLAALMDACHKRAR 948

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             V T++A    +LP    G     SF  PMA  ++  
Sbjct: 949 PIVMTTIAMGAGMLP-NALGLGAEPSFRQPMAIVVIGG 985


>gi|78065776|ref|YP_368545.1| acriflavin resistance protein [Burkholderia sp. 383]
 gi|77966521|gb|ABB07901.1| Acriflavin resistance protein [Burkholderia sp. 383]
          Length = 1102

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 73/583 (12%), Positives = 158/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLAIGVALAGLFAFVKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    S   +            +   +   Q
Sbjct: 116 RADLPAALKSNPTYRKVNPADSPIMI-VSLTSETSSPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSVSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANAP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEFGPQRYQLYTNDQASEASQYRDLVVAYRNGAAVRLSDLSDVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIDTIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +S   +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGKSRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++        +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLPESHDPQSEGRFGRFLEHCFTRMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   +L  +     +  +   Y +  KG     
Sbjct: 515 RGYERSLSWALRRPLLILLTLFATIGLNVYLYIVVPKGFFPQQ 557



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 63/148 (42%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +S + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAVSLVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +      S          E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---SRHIENGKSRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+ + S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLAVSLTVTP 483



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 93/215 (43%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + ++    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQVIYQTMAQVGVPPTIVGSFQGTAQAFQQSMNDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      +      S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRNNQK--SSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGNGDGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++V+   +++    + L++  +R
Sbjct: 1047 LRAPLGIAIAGGLIVSQVLTLYTTPVVYLYMDRFR 1081


>gi|293603906|ref|ZP_06686321.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Achromobacter piechaudii ATCC 43553]
 gi|292817743|gb|EFF76809.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Achromobacter piechaudii ATCC 43553]
          Length = 1031

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 75/657 (11%), Positives = 191/657 (29%), Gaps = 41/657 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  +G+       L    + ++P                         
Sbjct: 9   RRPVLALVVSTLILLLGI-----KALSGLPVRQYPLTESTTIT---------ITTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     +  + ++       S  Q ++ IT+    +        +V   +  
Sbjct: 55  SPDLMQGFVTQPIAQSVATVEGIDYLSSSSTQGRSVITVRMKLNADSNKAMTEVMAKVNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D    +LV +  +  ++     +   +   A   +  + R    Q+   +   
Sbjct: 115 VKYRLPPDVYDPVLVKSAGEATAVAYVGFSSSTLSLAA--LTDYLSRVVQPQLSSIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    DP R+     +  +++      N           ++  +     
Sbjct: 173 SVELYGGQKLAMRVWLDPDRMAARGISAGELAEALRDNNVQAAPGQAKSLYVVSNIQVNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                      D+     G           +    A      
Sbjct: 233 DVVSVAQF--------------------RDLVVKRDGDAIVRLGDVATVELGAASTDSSG 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    ++    L   ++    P     V          S   
Sbjct: 273 LMDGEPAVYFGLNATPVGNPLVIVKRLQELLPNIKQNLPPGTSVQVPFELARFISASIDG 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   +I L+++   A+++L G ++ L ++  +V
Sbjct: 333 VMQTLLEAIAIVVVVIFLCLGSLRAVLIPVVTIPLSMLGGAAIMALFGFSVNLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     + +S   +  +G       +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVHRHIEEGKSPVRAAMIGAREVAGPVIAMTITLAAVYAPIGLMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIPD 536
              G   + FA T+  ++++S   A+++   M  F++  +  +         +   L   
Sbjct: 453 GLTGSLFKEFAFTLAGAVVVSGVIALTLSPVMSSFLLNSRVSEGRMARYAERAFGRLGDA 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +  +  R   V   I  ++     L  +     +         + A +    + +  
Sbjct: 513 YGRVLDVSLRHRWVTGLIAVAVLISLPLLYNAAQRELAPVEDQSTVLTAIKSPQHANIDY 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
             +  +  D   +    +K   +        +          + +      +     
Sbjct: 573 VEKFGKQWDDVMKTVPEQKGRWLINGSDGVSNSIGGVDFVDWQDRKRSADEIQADMQ 629



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 88/254 (34%), Gaps = 11/254 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       + +  ++ +S  + D     + G     V              +L  +K+ +
Sbjct: 253 VRLGDVATVELGAASTDSSGLMDGEPAVYFGLNATPVGNPLVIVKR--LQELLPNIKQNL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                +                +++  +  + I  + + + +         L  + T+ L
Sbjct: 311 PPGTSVQVPFELARFISASIDGVMQTLLEAIAIVVVVIFLCLG---SLRAVLIPVVTIPL 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +       ALFG   NL  + A++  IG  V+D +VV + +    +      S      
Sbjct: 368 SMLGGAAIMALFGFSVNLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGKSPVRAAM 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               E  G  +  ++       P+ + G   GS+   FA  +A  +VV+   ++ ++  +
Sbjct: 425 IGAREVAGPVIAMTITLAAVYAPIGLMGGLTGSLFKEFAFTLAGAVVVSGVIALTLSPVM 484

Query: 820 LLFIYDWRAKNARI 833
             F+ + R    R+
Sbjct: 485 SSFLLNSRVSEGRM 498



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/177 (11%), Positives = 60/177 (33%), Gaps = 8/177 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFF 711
                    +       + +      ++IY+ +             + ++ + I   L   
Sbjct: 831  HDWQSDARQFSQEGSALMITFVFAIIVIYLVLAAQYESLRDPFIILVSVPMSICGALIPL 890

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            AL     N+     ++TLIG      +++ +   +     +  +  R  ++++    L  
Sbjct: 891  ALGMATVNIYTQIGLVTLIGLISKHGILMVEFANE--MQVSHGLDRRAAMEQAARIRLRP 948

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + T+ A  + ++P+      G     S  + +  G++V    ++F+   +      
Sbjct: 949  ILMTTAAMVMGLIPLLFATGAGAHSRYSLGLVIVVGLLVGTLFTLFVLPTVYTVFAR 1005


>gi|322433955|ref|YP_004216167.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
 gi|321161682|gb|ADW67387.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
          Length = 1062

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 68/550 (12%), Positives = 153/550 (27%), Gaps = 22/550 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G +        Q  +   P                          
Sbjct: 10  RPVATSLLMVAILLAGAVA-----YMQLPVSALPEVDYPIIQ---------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F+ +   +     V   +   
Sbjct: 56  PDVMASSVTAPLERQFGEIPGLKQMTSSSSGGGSVITLEFSLNESIDVAQQDVQEAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D       +      + +++   +        +           +I        
Sbjct: 116 FTYLPKDLPNPPTYSKVNPADAPIMT-LALTSKTLPLSKVEDLADTVLAQKISQLSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P+ L     +   +       N  +            + G    
Sbjct: 175 VSIAGGQKPAVRVQANPTALAGYGLSLEDVRTALGTANVDQAKGSISGARQMFTIGAN-- 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D++  S  +     A  +    +     +  +     +         KP     D + 
Sbjct: 233 --DQLLSSADYNKVIIAYRNGSPVRLSDIANSVDSAENLYQAAWMGTAAKPATKTTDAQD 290

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    +   LR          V          S    
Sbjct: 291 AVLDPAVIINIQRQPGANIIGVVDAVQKILPQLRTSMPSSVNLDVLTDRTNTIRASVKDV 350

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V+F+ +      ++   ++ L++I T  ++ LLG +L   S+  + +
Sbjct: 351 QFELVLTIGLVVMVIFLFLRSFSATVIPSVAVPLSIIGTFGIMYLLGYSLNNLSLMALTI 410

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  +   +   G  +   TI    I+ +   + L F G 
Sbjct: 411 STGFVVDDAIVMIENIARYLEEGDTALDAALKGSEQIGFTILSLTISLIAVLIPLLFMGD 470

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++IL+S   ++++   M   ++++                    IA
Sbjct: 471 IVGRLFREFAVTLAVTILVSAVVSLTLTPMMAAKLLKHTPDSEQGKLYRKSEEFFKYVIA 530

Query: 540 IQFMRARFWG 549
                 RF  
Sbjct: 531 KYGTGVRFVL 540



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 83/218 (38%), Gaps = 12/218 (5%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI----- 670
           +  V +  Q         V++ V+K + ++           V    +  +          
Sbjct: 294 DPAVIINIQRQPGANIIGVVDAVQKILPQLRTSMPSSVNLDVLTDRTNTIRASVKDVQFE 353

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + M+I++++R  +   +     + L I  T G   L G   N  ++ A+    
Sbjct: 354 LVLTIGLVVMVIFLFLR-SFSATVIPSVAVPLSIIGTFGIMYLLGYSLNNLSLMALTIST 412

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +      +  D   K   +     +  +++    ++P+   G
Sbjct: 413 GFVVDDAIVMIENI---ARYLEEGDTALDAALKGSEQIGFTILSLTISLIAVLIPLLFMG 469

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G +   FA+ +A  I+V+A  S+ +   +   +  
Sbjct: 470 DIVGRLFREFAVTLAVTILVSAVVSLTLTPMMAAKLLK 507



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 86/221 (38%), Gaps = 7/221 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +      +    + +V +   ++    ++              +    + +
Sbjct: 819  GQFPAVTISFNIAPGKSIGDAVTVVNQVQADLQLPPSVNAEFQGSAAAFEASLSNEPLLI 878

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + I + I + + ++ +   +  ++TL       +    LF ++ ++ A+  ++ LIG 
Sbjct: 879  LAALIVVYIVLGVLYESYIHPITILSTLPSAGVGAILALLLFHVDLSVIALIGIILLIGI 938

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   +        +   + I ++        + T+MAA +  +P+A+    
Sbjct: 939  VKKNAIMMIDFALE--AERDHGMEPEEAIYQACLLRFRPIMMTTMAALLGGVPLALGNGT 996

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G  +     I +  G++V+   ++F   P++   +D   + 
Sbjct: 997  GSELRRPLGITIVGGLIVSQVLTLF-TTPVVYLFFDRIGRR 1036


>gi|296139652|ref|YP_003646895.1| protein-export membrane protein SecF [Tsukamurella paurometabola
           DSM 20162]
 gi|296027786|gb|ADG78556.1| protein-export membrane protein SecF [Tsukamurella paurometabola
           DSM 20162]
          Length = 374

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 138/322 (42%), Gaps = 12/322 (3%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  ++ +       I   R R++     I+       L+    L+   +    +  
Sbjct: 12  EKKAGFFTKLYTGTGAFDIIGRRNRYYIATGIIIVIAILGILIPGFKLSIDFEGGTQVSF 71

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V + +            +  I   + Q      +   ++      +   T+    + ++
Sbjct: 72  PVGSAQADTAKAREVVQSATGIAPSAVQTAGSGASQTYQISTSELSADQITKARAALFEQ 131

Query: 642 ITEIV----PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
                    P +   +   V      ++ ++ ++G+I+  + + IYI +RF+    AL A
Sbjct: 132 FQPPGRDGKPSANTISFSAVSSTWGGQITQRALLGLIVFLVLVTIYIAVRFRELEMALAA 191

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTS 754
           + +L  D+  T G +A  G E +   V  +LT++G+S+ D VVV+D++ +N++  L+T  
Sbjct: 192 LASLFFDVIVTAGVYAWSGFEVSPATVIGLLTILGFSLYDTVVVFDKVEENVRGVLHTNR 251

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAA 809
            ++ +  + ++N+TL RS+ T++ + + ++ +      + G   +    +    G+VV  
Sbjct: 252 RTYAEQANLAVNQTLMRSINTTVISALPIVALMVVAAWILGVGTLMDLGLVQLVGVVVGT 311

Query: 810 SSSIFIAAPILLFIYDWRAKNA 831
            SS+F A+P+L+ + + + +  
Sbjct: 312 YSSVFFASPLLVTLKERKPEYK 333


>gi|189500018|ref|YP_001959488.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chlorobium phaeobacteroides BS1]
 gi|189495459|gb|ACE04007.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chlorobium phaeobacteroides BS1]
          Length = 1052

 Score =  161 bits (406), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/526 (12%), Positives = 140/526 (26%), Gaps = 44/526 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +GL+      + Q  L +FP   P               + +    
Sbjct: 8   RPVLATVISVFIFLLGLI-----GITQLPLTQFPDIAPPA-------------VQVSATY 49

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +        +E  + +        +     +  I + F      +  A  V  
Sbjct: 50  PGADAQTIARSVAPSLEEAINGVDDMTYMTSTSSNDGSLVINVLFRTGTDPDQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV-ISHAIEQSMEIIRQRIDQIGI 176
            +    S+L  +  +  L T   +   I++     D      A           +  +  
Sbjct: 110 RVAMATSQLPEEVTRFGLATAKTQNSMIMVITLFSDDPETYDATFLQNYAKINLLPDMQR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q +        +     P R+     T  ++       N       FG       
Sbjct: 170 VNGVGQTMVFGARDYSMRIWLKPDRMAAYSVTPQEVIAAVQSQNVEAAPGKFGEGAG--- 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                          + L         +  +    I                 +      
Sbjct: 227 -------------EALELIIRYKGKMKEPCEYGNIILRTNEDGSVLRLRDVARVELGSFS 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                               A  + N        +              I+      +  
Sbjct: 274 YAVDADANGKESVTMAIFQAAGSNSNDIQIAVQDVLEKASESFPAGIDYIIPYSTKKSLD 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T   V  LV +V+F+ +   +  L+   ++ + ++ T   L+L G ++ L +
Sbjct: 334 ESIEQVIFTLLQVFALVFLVVFIFLQDFRSTLIPAIAVPVAIVGTFFFLTLFGFSINLLT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG+ VD  I++ E +     + Q     +           +  + +      +
Sbjct: 394 LFALVLAIGIVVDDAIVIVEAVHARMEQRQLPARVATHQVMREITGVVISTTLVIASVFL 453

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
            + F GG      R FA T+  ++LIS   A+++  A+    +   
Sbjct: 454 PVGFLGGSIGIFYRQFAFTLVTAVLISTVNALTLSPALCALFLTKG 499



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 87/256 (33%), Gaps = 9/256 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + +  N    +  +R              + D      V +            +   
Sbjct: 245 YGNIILRTNEDGSVLRLRDVARVELGSFSYAVDADANGKESVTMAIFQAAGSNSNDIQIA 304

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
           V+  + +           I+     + L   I + I  ++     + + ++I    +   
Sbjct: 305 VQDVLEKASESFPAGIDYIIPYSTKKSLDESIEQVIFTLLQVFALVFLVVFIFLQDFRST 364

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + I  T  F  LFG   NL  + A++  IG  V+D +V+ + +    ++   
Sbjct: 365 LIPAIAVPVAIVGTFFFLTLFGFSINLLTLFALVLAIGIVVDDAIVIVEAVH--ARMEQR 422

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +  R    + + E  G  + T++      LP+   GGS+      FA  +   ++++  
Sbjct: 423 QLPARVATHQVMREITGVVISTTLVIASVFLPVGFLGGSIGIFYRQFAFTLVTAVLISTV 482

Query: 811 SSIFIAAPILLFIYDW 826
           +++ ++  +       
Sbjct: 483 NALTLSPALCALFLTK 498



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/171 (18%), Positives = 63/171 (36%), Gaps = 10/171 (5%)

Query: 666  IRKGIVGVIISAI-AMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
            I  G   V I  +  + +Y+ +      +   L  I T+   I        LFG+E N+ 
Sbjct: 870  IESGSQAVYIFLLSLVFVYLLLSAQYESYILPLAVIFTIPTGILGVFVGIQLFGVENNIY 929

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
               A++ LIG    + +++ +     ++   +  S  +   +     L   + TS    +
Sbjct: 930  VQVAMIMLIGLLAKNAILIVEFA---IQRRKSGYSLFESALEGSRVRLRPILMTSFTFAL 986

Query: 782  SVLP-MAVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +LP + V G S +   S       G++      + I   + +     + K
Sbjct: 987  GLLPLLWVSGPSALGNHSIGAAAVGGMLSGTFLGVLIIPVLYMVFQSLQEK 1037


>gi|327192441|gb|EGE59398.1| putative acriflavin resistance (multidrug efflux transporter)
           protein [Rhizobium etli CNPAF512]
          Length = 1050

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/634 (10%), Positives = 167/634 (26%), Gaps = 43/634 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++  +++   GL            +   P                      +  
Sbjct: 23  RRPILALVFNTLMVVAGLAA-----YVGVEVRELPDVDRPVVT---------VRTTFDGA 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  L    +   + +        +    Q+++TL F+D+      A+ V   +  
Sbjct: 69  SPQTIDQELTKVIEGAVARVSGLKSISSTSSFGQSRVTLEFSDAIDLAVAANDVRDAIGR 128

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +V       +I+       ++     + +  +  + ID++   +   
Sbjct: 129 ITQNLPDEADAPQIVKADSDSSAIMRLAVTSTKLNMD--DLTQLVENEVIDRLASVDGVA 186

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D   L     T   ++                 R          
Sbjct: 187 DVEEYGDQEKVFRVDVDQGALASRGLTIGDLTKALDNAALDVPAGSLKSRTQDIVVRATA 246

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + + + L                          R        +           
Sbjct: 247 NLQTPADFANVMLQD------------------------RVRLGDVATVTLGPRDGDTAL 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +              L           +   +     G+   
Sbjct: 283 RSNGKPGIGLGIIRQAQSNTLNISTGIKAAVEQLSKTLPEGTTIAITSDDAVFIQGAIHE 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + A +V  V+++ +   +  L+   S+ + +I TLA + ++G ++ + ++  IV
Sbjct: 343 VVLALLLAAVIVTAVIYLFLRDWRATLIPAVSMPVALIGTLAAIYMVGFSINILTLLAIV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  +  T     + L F  
Sbjct: 403 LATGLVVDDAIVVLENIVRRRAEGMGPRAAAVLGTREVFFAVIATTATLAAVFIPLSFLP 462

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F   +  S+ +S   A+++   +   ++    ++                 
Sbjct: 463 GQVGGLFREFGFVLAFSVGLSSIVALTLCPMLASRMLTKPMIEDHGALGRVGGAFASLYK 522

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      V I       +  L+    +   +  +    + ++       S +    
Sbjct: 523 WALHGCLNTPFVVILFSVMFAAAALIAFSTVKSELTPEEDRSMVMMRLTTPQGSSLEYTR 582

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           + +Q+ +   Q+    ++               +
Sbjct: 583 DKMQLLEEYLQSLVDSRDIRNVFSISGQGGSLNS 616



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 75/233 (32%), Gaps = 6/233 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L           N        +  Q Q       T +   V++    +   +TI  T  
Sbjct: 272 TLGPRDGDTALRSNGKPGIGLGIIRQAQSNTLNISTGIKAAVEQLSKTLPEGTTIAITSD 331

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +    +  ++ + I   +       W   L    ++ + +  TL    + G 
Sbjct: 332 DAVFIQGAIHEVVLALLLAAVIVTAVIYLFLRDWRATLIPAVSMPVALIGTLAAIYMVGF 391

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             N+  + A++   G  V+D +VV + +   ++     +  R        E     + T+
Sbjct: 392 SINILTLLAIVLATGLVVDDAIVVLENI---VRRRAEGMGPRAAAVLGTREVFFAVIATT 448

Query: 777 MAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                  +P++   G V      F   +AF + +++  ++ +   +   +   
Sbjct: 449 ATLAAVFIPLSFLPGQVGGLFREFGFVLAFSVGLSSIVALTLCPMLASRMLTK 501



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
              + + + + +  +F+   +   I    + +      FAL   G   N+ +   ++ L+G
Sbjct: 864  GFAIVIIFLVLAAQFESVLS-SLIIMSTVPLGLACAVFALIITGSSLNIYSQIGLVLLVG 922

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ +      +L       R  I+K+    L   + T +A  +  +P+     
Sbjct: 923  VMAKNGILIVEFAN---QLRDRGEDVRSSIEKACALRLRPVMMTMIATILGGVPLVFAHG 979

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G     +    +  G+  A   ++FI     L +  +   +A
Sbjct: 980  AGAEARVALGWVIVGGLGFATLVTLFITPVAYLLLARFAKPHA 1022


>gi|300694136|ref|YP_003750109.1| multidrug transport protein, acriflavin resistance protein domain
           [Ralstonia solanacearum PSI07]
 gi|299076173|emb|CBJ35486.1| multidrug transport protein, acriflavin resistance protein domain
           [Ralstonia solanacearum PSI07]
          Length = 1070

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 49/443 (11%), Positives = 119/443 (26%), Gaps = 14/443 (3%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + T        ++                   +    D++       
Sbjct: 116 AMPRLPDVVQRLGVTTVKSSPDLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLARINGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP+++ +   T  ++       N      + G          Q 
Sbjct: 176 QVQLFGSGDYSMRVWLDPNKVAERGLTANEVVRAIRDQNVQVAAGVIGGSPSVPGTDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    +      
Sbjct: 236 SVNAQGRLKTEQ-------------EFGDIILKSSPNGAVTTLRDVARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L+          +          S   
Sbjct: 283 LLDNKQAVAIPIFQAPGSNALQISDDVRKTMAELKQDFPEGVDYRIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T  L+ + G ++   S+ G+V
Sbjct: 343 VTHTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSIIGTFGLMLMFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +     +  S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAEGLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMT 462

Query: 482 GGAVRGFAITMGLSILISMFTAI 504
           G   + +        + ++ +A+
Sbjct: 463 GLTGQFYKQFALTISISTVISAV 485



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    +   + N+     ++ L+G +  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSLFAAMLGVWVSRGDNNIFTQIGLVVLVGLACKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S      ++    L   + TS+A  + V+P+ V    G  +  +  + +  G+
Sbjct: 960  -LELQGRSIVAAAIEACRLRLRPILMTSIAFIMGVVPLVVSTGAGAEMRHAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +    ++  R
Sbjct: 1019 LGVTLFGLFLTPVFYVVLRTLASRRQR 1045



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T G   +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---LAVPVSIIGTFGLMLMFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIAE-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R+   K++ E  G  +  ++      +P+A      G     FA+ ++   V++A
Sbjct: 426 -GLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 VNS 487


>gi|300697768|ref|YP_003748429.1| multidrug transporter, acriflavin resistance protein domain
           [Ralstonia solanacearum CFBP2957]
 gi|299074492|emb|CBJ54043.1| multidrug transport protein, acriflavin resistance protein domain
           [Ralstonia solanacearum CFBP2957]
          Length = 1068

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 57/484 (11%), Positives = 135/484 (27%), Gaps = 17/484 (3%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVENMLYMQSQANSDGNLTLTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + T        ++                   +    D++       
Sbjct: 116 AMPRLPDVVQRLGVTTIKSSPDLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLARINGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP+++ +   T  ++       N      + G          Q 
Sbjct: 176 QVQLFGSGDYSMRVWLDPNKVAERGLTANEVVRAIRDQNVQVAAGVIGGSPSVPGTDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    +      
Sbjct: 236 SVNAQGRLKTEQ-------------EFGDIILKSSPNGAVTTLRDVARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L+          +          S   
Sbjct: 283 LLDNKQAVAIPIFQAPGSNALQISDDVRKTMAELKEDFPEGVDYRIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T  L+ + G ++   S+ G+V
Sbjct: 343 VTHTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSIIGTFGLMLMFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAEGLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++        +  +    L     
Sbjct: 463 GLTGQFYKQFALTISISTVISAFNSLTLSPALAALLLKSHDAPKDWLARVMEKSLGWIFH 522

Query: 539 AIQF 542
               
Sbjct: 523 PFNR 526



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 55/147 (37%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + +   +    +   + N+     ++ L+G +  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSLFAAMLGVWVSHGDNNIFTQIGLVVLVGLACKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     S      ++    L   + TS+A  + V+P+ +    G  +  +  + +  G+
Sbjct: 960  -LELQGRSIVQAAIEACRLRLRPILMTSIAFIMGVVPLVMSTGAGAEMRHAMGVAVFAGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +      +F+     + +    ++  R
Sbjct: 1019 LGVTLFGLFLTPVFYVVLRTLASRRRR 1045



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T G   +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---LAVPVSIIGTFGLMLMFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIAE-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R+   K++ E  G  +  ++      +P+A      G     FA+ ++   V++A
Sbjct: 426 -GLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 FNS 487


>gi|166366354|ref|YP_001658627.1| RND multidrug efflux transporter [Microcystis aeruginosa NIES-843]
 gi|166088727|dbj|BAG03435.1| RND multidrug efflux transporter [Microcystis aeruginosa NIES-843]
          Length = 1100

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 75/569 (13%), Positives = 157/569 (27%), Gaps = 34/569 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  IG +      L +     F          LG D +      ++ +
Sbjct: 11  KRPVLTTVCSILIVLIGAIAVPFLPLEKLPQLAFIQVAVNAN-YLGTDAK-----TVQDN 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  +      +        +   S    Q+ + + F     +      V   +  
Sbjct: 65  VTTVLDRQINGTEQIVY-------MQSQSTNTGQSTVNVFFPVEMDRNIAQVLVQNRVST 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV-----ISHAIEQSMEIIRQRIDQIGI 176
             + L  +  +  + T T+     +    +             +  S  + R    +I  
Sbjct: 118 AAASLPEEVNRQGVTTNTQSPSVTLAYGISAKPDEKGNYPYDTVFLSNFVDRVIDAEIRR 177

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              L    +P  L     +  ++       N        G     + 
Sbjct: 178 IEGVGSTTIIGEREYALRFWLNPDALAARGVSAEQVVQAIREQNIQVGAGTIGGDPSPEE 237

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  +     ++                +    +                        
Sbjct: 238 QQFQIAIRAVGRVATGE-------------EAENIVVKVGENGDLIRIKDVGRAEIGAES 284

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          I       +   T +      A L     P     +   N     
Sbjct: 285 YSTAAYFDKSPAVVYIVYQLPGSNAWNTAKLVKEKMAELEPSFPPGLNIAITLDNTAFVA 344

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  ++   +I +++I T+A+   LG +L   S
Sbjct: 345 ASLEEAFSTLVEAILLVILVIFIFLQDWRTTIIPAIAIPVSLIGTMAVALALGYSLNNLS 404

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  ++L  GL VD  I++ E + E+ R+    F +         S +  S++  L   + 
Sbjct: 405 LFAVILATGLVVDDGIVIVEAVSEKLRQGMRPFQAALDAMGELTSAVIASSLVLLAVFIP 464

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R FA+ +  SI+IS F A+S    M   I++  +     +      F 
Sbjct: 465 VTFFPGTVGIVYRQFAVIISASIIISTFNALSFSPTMSAIIMKAPQRTRGPLGLFFEGFN 524

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSIC 562
                  +  R     +       +    
Sbjct: 525 RGFNAVKEGYRRSIEFLIRIRFLVLPFFI 553



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/237 (9%), Positives = 84/237 (35%), Gaps = 7/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + +  V       +    +           +  Q    ++    ++++    ++    
Sbjct: 268 DLIRIKDVGRAEIGAESYSTAAYFDKSPAVVYIVYQLPGSNAWNTAKLVKEKMAELEPSF 327

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P        +         + +    ++ + + +++ I+I    W   +     + + + 
Sbjct: 328 PPGLNIAITLDNTAFVAASLEEAFSTLVEAILLVILVIFIFLQDWRTTIIPAIAIPVSLI 387

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T+      G   N  ++ AV+   G  V+D +V+ + + + ++     +        ++
Sbjct: 388 GTMAVALALGYSLNNLSLFAVILATGLVVDDGIVIVEAVSEKLRQ---GMRPFQAALDAM 444

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819
            E     + +S+      +P+  + G+   V   FA+ ++  I+++  +++  +  +
Sbjct: 445 GELTSAVIASSLVLLAVFIPVTFFPGTVGIVYRQFAVIISASIIISTFNALSFSPTM 501



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 71/178 (39%), Gaps = 20/178 (11%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFF----------ALFGI 716
               V   ++ I + + +  +++ Y   +  + T+ L I   +G            +LF  
Sbjct: 879  AAPVIFGLAFIVVFLVLAAQYESYIDPIIIMITVPLAILGAMGALLLRANFLQVGSLFPA 938

Query: 717  EFNLTAV-AAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVY 774
              N      A++ LIG +  + +++     +      T  +S  D   ++  E L   + 
Sbjct: 939  VNNNIYAQVALVMLIGLAAKNAILIV----EFANQSRTLGLSIPDAAARASTERLRPILM 994

Query: 775  TSMAAFISVLPMAV-WGGSVIG--SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+++  +  LP+ +  G   +   S    +  G +++   S+F+   + + I  + A+
Sbjct: 995  TAISGLVGFLPLVIASGAGAMSRWSLGTAILGGYLISTVLSLFLVPVLYVLIKQFEAR 1052


>gi|187926403|ref|YP_001892748.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ralstonia pickettii 12J]
 gi|241665890|ref|YP_002984249.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Ralstonia
           pickettii 12D]
 gi|187728157|gb|ACD29321.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ralstonia pickettii 12J]
 gi|240867917|gb|ACS65577.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ralstonia pickettii 12D]
          Length = 1068

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 57/484 (11%), Positives = 134/484 (27%), Gaps = 17/484 (3%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N   T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVENMLYMQSQANSDGNLTTTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + T        ++                   +    D++       
Sbjct: 116 ALPRLPDVVQRLGVTTVKSSPDLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLARISGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP+++ +   T  ++       N      + G          Q 
Sbjct: 176 QVQLFGSGDYSMRVWLDPNKVAERGLTANEVVKAIRDQNVQVAAGVIGGSPSVPGTDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      I    +      
Sbjct: 236 SVNAQGRLKTEQ-------------EFGDIILKSSPNGAVTYLRDVARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L+          +          S   
Sbjct: 283 LLDNKQAVAIPIFQAPGSNALQISDDVRKTMAELKEDFPEGVDYRIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T  L+ + G ++   S+ G+V
Sbjct: 343 VTHTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSIIGTFGLMLMFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAEGLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++        +       L     
Sbjct: 463 GLTGQFYKQFALTISISTVISAFNSLTLSPALAALLLKSHDAPKDWLARAMDKGLGWIFR 522

Query: 539 AIQF 542
               
Sbjct: 523 PFNR 526



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 81/252 (32%), Gaps = 12/252 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A   V LS +    +      +   N     +             AQ  V  +  + + 
Sbjct: 801  TAGEMVPLSSLLRVSQGFGPDMVVRYNGYTAADINGGPAPGFSSGQAQAAVERIAHETLP 860

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
            + V                       +    I  + + + +  +++     L  I  + +
Sbjct: 861  KGVRF-----EWTDLTYQQILAGNSAVWIFPICVLLVFLVLAAQYESLTLPLAVILIVPM 915

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    +   + N+     ++ L+G +  + +++ +  R+   L     +  +   
Sbjct: 916  SLFAAMLGVWVSHGDNNIFTQIGLVVLVGLACKNAILIVEFARE---LELQGRTIVEAAI 972

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + V+P+ V    G  +  +  + +  G++      +F+    
Sbjct: 973  EACRLRLRPILMTSIAFIMGVVPLVVSTGAGAEMRHAMGVAVFAGMLGVTLFGLFLTPVF 1032

Query: 820  LLFIYDWRAKNA 831
             + +    A+  
Sbjct: 1033 YVLLRTLAARRG 1044



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T G   +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---LAVPVSIIGTFGLMLMFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIAE-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R+   K++ E  G  +  ++      +P+A      G     FA+ ++   V++A
Sbjct: 426 -GLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 FNS 487


>gi|118580618|ref|YP_901868.1| acriflavin resistance protein [Pelobacter propionicus DSM 2379]
 gi|118503328|gb|ABK99810.1| acriflavin resistance protein [Pelobacter propionicus DSM 2379]
          Length = 1029

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/557 (11%), Positives = 150/557 (26%), Gaps = 38/557 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G +        Q  +   P                          
Sbjct: 10  RPVATTLLMLAILLAGAMA-----YTQLPVSALPQVDYPTIQ---------VRTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PDVMATSVTAPLERQFGQMPGLTQMSSTSSGGSSVITLQFSLELSLDVAEQEVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +      + +L+   +        +       +   +I        
Sbjct: 116 YNYLPTDLPTPPVYSKVNPADAPILT-LALTSPSLSLSKVEDLADTRLAQKISQLPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +P+ L     T   +       + ++    F         G    
Sbjct: 175 VSISGGQRPAVRIHANPTALAAYDLTLEDLRTALTAASVNQAKGGFDGPAQAFIIGANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                     T     ++                 +   +        
Sbjct: 235 L--------------------FTSDQYRNLIIAYKNNSPLRLCDVAEVSDDVEDTNQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   LR          V          S    
Sbjct: 275 MNGEPAVIVNIQRQPGANVIEAVDRIKKLLPQLRGALPAAVKVSVLTDRTSTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +       +   ++ L+++ +  ++ LLG +L   S+  + +
Sbjct: 335 QHEMLLAVALVVMVIFLFLRNLPATAIPGVAVPLSLVGSFGVMYLLGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 STGFVVDDAIVMIENISRYVEEGETPLQAALKGSKQIGFTILSLTLSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+G++ILIS   ++++   M   ++++   +       +   L+   I 
Sbjct: 455 VVGRLFREFAVTLGVTILISALVSLTLTPMMCSRMLKHVPEEKQGRFYHASGALLERIIR 514

Query: 540 IQFMRARFWGVGISILF 556
                  +     S   
Sbjct: 515 RYGTSLNWVLEHQSATL 531



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 63/150 (42%), Gaps = 11/150 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAI--TTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + ++ + M+I++++R        AI    + L +  + G   L G   N  ++ A+    
Sbjct: 340 LAVALVVMVIFLFLR---NLPATAIPGVAVPLSLVGSFGVMYLLGFSLNNLSLMALTIST 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +      +      K   +     +  +++    ++P+   G
Sbjct: 397 GFVVDDAIVMIENI---SRYVEEGETPLQAALKGSKQIGFTILSLTLSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +   I+++A  S+ +  
Sbjct: 454 DVVGRLFREFAVTLGVTILISALVSLTLTP 483


>gi|323144523|ref|ZP_08079124.1| acriflavine resistance protein B [Succinatimonas hippei YIT 12066]
 gi|322415736|gb|EFY06469.1| acriflavine resistance protein B [Succinatimonas hippei YIT 12066]
          Length = 1046

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/528 (15%), Positives = 153/528 (28%), Gaps = 33/528 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +   +GL+      LP   L RFP   P   IS+ L   G S   LE   
Sbjct: 9   RPVLSWVIALLTVILGLI-----VLPSLKLSRFPDIAPPT-ISISLSYPGASAETLENSV 62

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +          L        ++    N  +  SF  S   +    +V      
Sbjct: 63  AQVVEQQMT--------GLDNLLYFNTTVNSEGNVNVRFSFDQSVNPDVAQMQVQNRFDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             SKL  + ++N +      E  +               +    I+    D I       
Sbjct: 115 AMSKLPDEVQQNGVRIRKVSEDVLQNIAFYTKDGSLTQEDIGDFIVSVLQDPISRLNGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  +L     T   +       N        G            
Sbjct: 175 DVNVRGSQ-YAMRIWLDQDKLHFYSLTPQDVVNAIEAQNKQISVGQVGAMPAVPGQQLNV 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +V+ +             +      +    +   +      +      + K  A      
Sbjct: 234 VVKSR-------------HMLETPEEFENILLKSDEIGGTVYIKDVAKVEKGRASYTVFA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     +     +   T          LR         ++    V     S   
Sbjct: 281 NYNHLPMASLEINLTEGSNAVETANRIAAELERLRPLFPESLEYVIPYDTVPFVKASLYE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+ + +   +  LV   +I + +  T+ +L   G ++   ++  +V
Sbjct: 341 VGKTLVEALILVSLVILLFLRDIRSTLVVTITIPIVLCATVVVLYFFGYSINTLTMFAMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     K   + + +         S +F   +      V + FF
Sbjct: 401 LAIGLLVDDAIVVVENVNRLIYKFALTPYEAAVRSMQEISSALFGVGLVIAAVFVPMSFF 460

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           G   G   R F++T+  ++L+S+ TA+ +  ++   I++ +       
Sbjct: 461 GGAAGNIYRQFSVTIVSAMLMSIVTALVVTPSLCASILKVRHRNPHKR 508



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 62/148 (41%), Gaps = 5/148 (3%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L    T+ + +  T+     FG   N   + A++  IG  V+D +VV + + 
Sbjct: 359 FLRDIRSTLVVTITIPIVLCATVVVLYFFGYSINTLTMFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
            N  +Y  +++  +   +S+ E         +      +PM+ +GG+   +   F++ + 
Sbjct: 418 -NRLIYKFALTPYEAAVRSMQEISSALFGVGLVIAAVFVPMSFFGGAAGNIYRQFSVTIV 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++++  +++ +   +   I   R +N
Sbjct: 477 SAMLMSIVTALVVTPSLCASILKVRHRN 504



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 75/261 (28%), Gaps = 26/261 (9%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +        +S+     +F      +       +  GDS +     + +      I    
Sbjct: 794  NDEGKMVGFDSIGSYKWTFGPQQLNRFNGTSSIFIEGDSASGVSSGQAMDAIAKVISSHP 853

Query: 650  TIQNTEIVGPKISRELI--RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
               +    G     +L       +  I + I  L    +   W      I  + +     
Sbjct: 854  GQYSYAWSGASYQEQLTGSHTQFLFAISALIVFLCLAALYESWSIPFAVIMIIPVGAFGA 913

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSIN 766
            LG   L GIE ++     +LT  G +  + +++     +    +     +      ++  
Sbjct: 914  LGLVWLRGIENDIYLQVGLLTTGGLAAKNAILIV----EYAHQFRMRGQTLLKSAKQAAA 969

Query: 767  ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS----------I 813
                  + TS A  + V+P+      G S   S       G++    S+           
Sbjct: 970  LRFRPIIMTSAAFLLGVMPLLAADGAGASSQQSIGT----GVIGGTLSATVLGVLMVPVF 1025

Query: 814  FIAAPILLF--IYDWRAKNAR 832
            F+   +L    +     K  R
Sbjct: 1026 FVCVSLLFDEKLRKRAFKWKR 1046


>gi|153834709|ref|ZP_01987376.1| acriflavin resistance protein [Vibrio harveyi HY01]
 gi|148868848|gb|EDL67912.1| acriflavin resistance protein [Vibrio harveyi HY01]
          Length = 1037

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 61/651 (9%), Positives = 173/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVAALVLSMLLCVFGFVS-----FTKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +    R  +D+  +     
Sbjct: 115 AQRSLPDEADDPVVFKNNGSGEASLYINLSSSE--MDRTQLTDYAERVLMDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SIDLSGGLYKVMYVKLKPDLMAGRSVTASDITSALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +          +     ++           
Sbjct: 219 -----VRNDSTVMSVRTARTYNTPEDFQYLVVKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     ++       ++          ++         S   
Sbjct: 274 KSDGVVNISLGVVPQSDANPLEVAQSVRSEVDKIQKFLPDGTRLAIDYDATVFIERSIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + +S++ S   A+++   +   I++     +            L   
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNRFNQAVDKLFAKLEAG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    +       ++ +         + +   +  +    +     R  D +    
Sbjct: 514 YRKALRGALKVRWAAPLVIVACMGGSYGLMNQVPAQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MSANMDIVEDRLMPLLGQGFLKSFSIQTPAFGGQAGDQTGFVIMILEDWNE 624



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARTYNTPEDFQYLVVKRASDNTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L   P        V + V+ ++ +I           +    +  + R        +
Sbjct: 279 VNISLGVVPQSDANPLEVAQSVRSEVDKIQKFLPDGTRLAIDYDATVFIERSIDEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNR 498



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 49/146 (33%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        + G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMFTVPMGVFGGFLGLVVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    I F   I  +    L   + T+       +P+ +    G     +    + FG+
Sbjct: 931  QLRDRGIEFEKAITDAAARRLRPIMMTAFTTLAGAIPLIMSTGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A   ++F+   +   I        
Sbjct: 991  GFATLVTLFVIPAMYRLISAKTRSPG 1016


>gi|167621771|ref|YP_001676556.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Caulobacter
           sp. K31]
 gi|167351512|gb|ABZ74242.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Caulobacter sp. K31]
          Length = 1072

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 65/506 (12%), Positives = 135/506 (26%), Gaps = 33/506 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L +++   G++        +  +  +P  +P   +          H       
Sbjct: 10  RPIFASVLSAVVLLGGIISVF-----KLPISEYPDVIPPQVL---------VHAEFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                 T++F      +     V   +  
Sbjct: 56  PKVIAETVAAPIEEKINGVQDMLYMQSQANSDGKMTTTVTFKLGTNPDLAQQLVQNRVTQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D ++  + T      ++ L+                  +    D++       
Sbjct: 116 AVPHLPEDVQRLGVTTVKASS-TMTLAVQISGDQNHDLAYLRNYALINIKDRLARIPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L Q   T           N      M G          Q 
Sbjct: 175 DVQLYGAGDYAMRIWLDPQKLAQRNLTATDAVAAIREQNVQVSAGMIGGTPNVPGVPLQL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K  +                 +    +     G    +      I    A      
Sbjct: 235 DVNVKGRL-------------QSVEEFGEIVVKTGPGGGVIYLRDVARIELGAAEYGQRT 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L                +     +     +A  +           +          S  
Sbjct: 282 ALNNGRSMAIWIFQLPGANALQIADAVRKTMAEEIGPEMPAGVSYRIVYDPTRFVKASIE 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ M +   +  ++   ++ + ++ T A L   G ++   S+ G+
Sbjct: 342 AVIHTLLEAVALVVLVVIMFLQTWRASVIPLLAVPVAIVGTFAFLLGFGYSINALSLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I    +T +   V L F 
Sbjct: 402 VLAIGIVVDDAIVVVENVERNLEAGLSPKAATYKAMQEVSGPIIAIALTLIAVFVPLAFM 461

Query: 481 ---GGGAVRGFAITMGLSILISMFTA 503
               G   + FA+T+ +S +IS F +
Sbjct: 462 SGLTGQFYKQFAVTIAVSTVISAFNS 487



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 72/232 (31%), Gaps = 11/232 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      ++  +        +         S      +E V  K           +   
Sbjct: 815  TVTPGYGPEMVVRYNGFTAADINGGPAPGYSSDQAKAAVERVAAKTLPAGFKFEWTDLTY 874

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                         +    +S + + + +  +++     L  I  + + +   L    L  
Sbjct: 875  QQILAGN----SALWVFPVSLLLVFMVLAAQYESLTLPLAVILIVPISVFAALFGVWLLR 930

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + N+     ++ L+G S  + +++ +  R    L     S  D   ++    L   + T
Sbjct: 931  GDNNICTQIGLMVLVGLSAKNAILIVEFARD---LEMQGRSIVDAAVEASRMRLRPILMT 987

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            S A  + V+PM +    G  +  +  + + FG++      + +     + + 
Sbjct: 988  SFAFIMGVIPMVLSSGAGAEMRRAIGVAVFFGMLGVTLFGLMLTPVFYVLLR 1039



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 86/241 (35%), Gaps = 11/241 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           ++ V       +  +R             Q         + +           ++ + V+
Sbjct: 250 EIVVKTGPGGGVIYLRDVARIELGAAEYGQRTALNNGRSMAIWIFQLPGANALQIADAVR 309

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-----ISAIAMLIYIWIRFKWYFAL 694
           K + E +                   ++  I  VI       A+ +L+ I     W  ++
Sbjct: 310 KTMAEEIGPEMPAGVSYRIVYDPTRFVKASIEAVIHTLLEAVALVVLVVIMFLQTWRASV 369

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             +  + + I  T  F   FG   N  ++  ++  IG  V+D +VV + + +N++     
Sbjct: 370 IPLLAVPVAIVGTFAFLLGFGYSINALSLFGLVLAIGIVVDDAIVVVENVERNLEA---G 426

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASS 811
           +S +    K++ E  G  +  ++      +P+A      G     FA+ +A   V++A +
Sbjct: 427 LSPKAATYKAMQEVSGPIIAIALTLIAVFVPLAFMSGLTGQFYKQFAVTIAVSTVISAFN 486

Query: 812 S 812
           S
Sbjct: 487 S 487


>gi|299136315|ref|ZP_07029499.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
 gi|298602439|gb|EFI58593.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
          Length = 1092

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/572 (11%), Positives = 157/572 (27%), Gaps = 38/572 (6%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMY 73
              +L+       Q  +   P                   ++        D +   +   
Sbjct: 1   MAAILLVGIVGYTQLPVSALPEVDYPT-----------IQVLTFYPGASPDVMATTVTAP 49

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            +     ++       +     + I L F  S   +   ++V   +    S L  +    
Sbjct: 50  LERQFGEMQGLSQMTSTSAGGNSVIVLQFNLSLNIDIAEEEVQSAINAAQSFLPANLPAP 109

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            + + T    + VL+   +        +    +  +   +I           S      +
Sbjct: 110 PIYSKTNPADAPVLT-LAVTSNTIPLSQVEDLVDTRLAPKISQLSGVGLVSISGGQKPAV 168

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
             + +P+ L         +       + +     F              +          
Sbjct: 169 RIQVNPTALSSYGINLEDLRTAVSQSSVNAAKGNFDGPRQDYQIDANDQLVTS------- 221

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                             +                 I   +        +          
Sbjct: 222 -------------DDYKKVVVAYRNGAPVMLTDVATIVDGVENTTQAAWMNQTPAIILNV 268

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             +   +    +++   L   L A                    S    +    +  GLV
Sbjct: 269 QRQPGGNTISVVKSIKALLPQLEANLPKGIQVTTLTDLTTPIQASVDDVEFELMLTIGLV 328

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           ++V+F+ +      ++   ++ L+++ T A +  LG +L   S+  + +  G  VD  I+
Sbjct: 329 VLVIFLFLRNLYATIIPSVAVPLSLVGTFAAMYALGYSLDNLSLMALTISTGFVVDDAIV 388

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAI 490
           + E I     +  S   +   G  +   TI    ++ +   + L F G   G   R FA+
Sbjct: 389 MVENISRYLEEGDSPMQAALKGAEQIGFTILSLTVSLIAVLIPLLFMGDVVGRLFREFAV 448

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
           T+ ++I+IS   ++++   M   I+++    +      +   +    IA       F   
Sbjct: 449 TLAVTIVISAVVSLTLTPMMASRILKHDPEATQGRFYQASERVFEWMIAFYGRTLSFVLR 508

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +I   +  +  L      Y I  KG   + 
Sbjct: 509 FQTITLFVA-LATLMLTIYLYIIIPKGFFPVQ 539



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 92/242 (38%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L+ V + ++ ++    +          L   +   G++++  + ++ + 
Sbjct: 228 VVAYRNGAPVMLTDVATIVDGVENTTQAAWMNQTPAIILNVQRQPGGNTISVVKSIKALL 287

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            ++   +P      T        +  +      ++++   +++ I++  +  +A +    
Sbjct: 288 PQLEANLPKGIQVTTLTDLTTPIQASVDDVEFELMLTIGLVVLVIFLFLRNLYATIIPSV 347

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L +  T       G   +  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 348 AVPLSLVGTFAAMYALGYSLDNLSLMALTISTGFVVDDAIVMVENI---SRYLEEGDSPM 404

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
               K   +     +  +++    ++P+   G   G +   FA+ +A  IV++A  S+ +
Sbjct: 405 QAALKGAEQIGFTILSLTVSLIAVLIPLLFMGDVVGRLFREFAVTLAVTIVISAVVSLTL 464

Query: 816 AA 817
             
Sbjct: 465 TP 466



 Score = 45.5 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 97/288 (33%), Gaps = 10/288 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S      ++  L +                     PV LS       + +   I+ 
Sbjct: 790  LFTPSANTLSPAVNALTSSTAASSGGATSAGTTSSSFGSPVPLSAFSHFETTTEALSIAH 849

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            Q           L        A   + ++ K         +  Q T           +  
Sbjct: 850  QGQFPSITVSFNLAPNAALGGAIDSITKVQKDMHMPASVQADFQGTAASFRNS----LSN 905

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              + ++ + + + I + + ++ +   +  ++TL            LF  + ++ A+  ++
Sbjct: 906  EPLLILAALVTVYIVLGVLYESFIHPITILSTLPSAGVGAFLSLILFHQDLSVVAIIGIV 965

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG    + +++ D   +  + +  + +  + I ++        + T+MAA +  LP+A
Sbjct: 966  LLIGIVKKNGIMMVDFALEAERHHGKNST--EAIYEACLLRFRPIMMTTMAALLGGLPLA 1023

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  +     I M  G++++   +++    I +F  +   + +R
Sbjct: 1024 FGHGIGSELRRPLGIAMVGGLMLSQVLTLYTTPVIYIFFDNLAKRFSR 1071


>gi|54025661|ref|YP_119903.1| preprotein translocase subunit SecD [Nocardia farcinica IFM 10152]
 gi|54017169|dbj|BAD58539.1| putative protein exporter membrane protein [Nocardia farcinica IFM
           10152]
          Length = 561

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 119/533 (22%), Positives = 211/533 (39%), Gaps = 26/533 (4%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD--- 64
            +L      + ++ AL  F                   LG+DL+GG+ + L     D   
Sbjct: 12  RLLGVYAALLAVIYALVFFTGDQSPTP----------KLGIDLQGGTRVTLTARTPDGSR 61

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQGV 122
                L+   + + + +   G+G   +    + I ++    D +    +A    L+++ V
Sbjct: 62  PSQDSLRKAQEIIENRVNGLGVGGSEVAIEGDNIVITVPGDDGQQARALATTAKLYIRPV 121

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            +                   +            +    ++      +            
Sbjct: 122 LAAQQAGAAAQPAPAPATPAPAEPAPATAPAPAPAAPEAEAPVDTAPQQRVFPAQAPPTT 181

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV------RFLRDS 236
              +     +   E   ++  +     A         + SK+  + G             
Sbjct: 182 DDDNLTPQERAQREITAAKQTRQSTDPAVQQAAMAALDCSKQDPLAGNDDPNLPLVTCSQ 241

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           DG +  + DK  I G  +  A AN D +  + VVD+ F   G+  +  +T + + K +A 
Sbjct: 242 DGTEVFLLDKTRIDGQEIKDAVANLDQQQSRWVVDLEFKSSGSDAWASLTGEYLYKRVAF 301

Query: 297 VLDGRVLTAPVIN-QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
            LD  V++AP +       G+ QISG FT  +A  LA  L+ GSLP+     E   V A 
Sbjct: 302 TLDSEVVSAPQVQAGPQLGGRTQISGQFTAASAKELANTLKYGSLPLSFQTSEAETVSAT 361

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GAT 411
           LG  S+  G  A   GL +++L+ +V Y   GL+   S+  + +    L+ LL    G T
Sbjct: 362 LGLSSMRAGLIAGAVGLAVVLLYCLVYYRMLGLLTGLSLVASGLAVYGLMVLLGRWIGFT 421

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L L  IAG+++GIG+  DS ++  ERI++E R+ +S   ++  G+ RA  TI   N  + 
Sbjct: 422 LDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWQRARRTILSGNGVSF 481

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           IA  VL+    G V+GFA T+GL+ ++ +     +   +++   R        
Sbjct: 482 IAAAVLYVLAVGQVKGFAFTLGLTTILDVVVVFLVTAPLVLLASRSAFWSKPS 534



 Score = 89.4 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 67/179 (37%), Gaps = 8/179 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                  E V   +    +R G++   +    +L+Y  + ++    L    +L+      
Sbjct: 349 SFQTSEAETVSATLGLSSMRAGLIAGAVGLAVVLLYCLVYYRML-GLLTGLSLVASGLAV 407

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            G   L G       +L  +A ++  IG + +  VV ++R++  M+      SFR  + +
Sbjct: 408 YGLMVLLGRWIGFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMRE---GRSFRSAVPR 464

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                    +  +  +FI+   + V     +  FA  +    ++       + AP++L 
Sbjct: 465 GWQRARRTILSGNGVSFIAAAVLYVLAVGQVKGFAFTLGLTTILDVVVVFLVTAPLVLL 523


>gi|301164882|emb|CBW24443.1| putative transmembrane Acr-type transport protein [Bacteroides
           fragilis 638R]
          Length = 1052

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/528 (12%), Positives = 159/528 (30%), Gaps = 40/528 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEYGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DPS+L     T   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPSKLEAYNLTIETISSIIGAENKNIPGGNFDIGNETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  ++  + +                            +      +   +       
Sbjct: 232 EFDDSRQLEDVVVGSY--------------------NGANVYLRDVARVVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVKGAMIVVQKQSGANSVDISKKVAEALPKLQKNLPSDVKLGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LAETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAVTGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           G +    +     M   + IS   A+S+   +   ++R +K +S    
Sbjct: 452 GMSGVMFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKQSKTFK 499



 Score = 80.9 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 92/249 (36%), Gaps = 7/249 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V   +++++       N   +   +V  +    +SV  ++ +     K+ + +P
Sbjct: 251 NVYLRDVARVVDTVEERAQETYNNGVKGAMIVVQKQSGANSVDISKKVAEALPKLQKNLP 310

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                   +         I      V+ + + ++I +++   +W   L    T+ L +  
Sbjct: 311 SDVKLGVIVDTSDNILNTIDSLAETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIA 370

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           +  + A+ G   N+ +++++   IG  V+D +VV + +             +       N
Sbjct: 371 SFIYLAVTGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTN 427

Query: 767 ETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++       P+  V G  G +       M   + ++  +++ +   +   +
Sbjct: 428 EVAISVIASTLTMIAVFFPLTMVSGMSGVMFKQLGWMMCAIMFISTVAALSLTPMLCSQL 487

Query: 824 YDWRAKNAR 832
              + K ++
Sbjct: 488 LRLQKKQSK 496



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 76/241 (31%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L  +            ++  +V +            V           +P        
Sbjct: 793  KELGKVVERFAPPTIERKDRERIVTVSAVISGEALGNVVNAGNAIIDKMDIPSDVTIQVA 852

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + ++I  + + I +  +F+   +    + +L    +  L      
Sbjct: 853  GSYEDQQDSFRDLGTLAILI-VVLVFIVMAAQFESLTYPFIIMFSLPFAFSGVLMALFFT 911

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                ++ ++   + LIG  V + +V+ D +          ++  + +  +    L   + 
Sbjct: 912  KSTLSVMSLLGAIMLIGIVVKNGIVLIDYI---TLCRERGLAVLNSVVTAGKSRLRPVLM 968

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+    + ++PMA+ GG    +    AI +  G+ V+   ++ +   +         K+ 
Sbjct: 969  TTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTVSTILTLVLIPTLYCVFAGTGIKHQ 1028

Query: 832  R 832
            R
Sbjct: 1029 R 1029


>gi|254487917|ref|ZP_05101122.1| protein-export membrane protein SecD [Roseobacter sp. GAI101]
 gi|214044786|gb|EEB85424.1| protein-export membrane protein SecD [Roseobacter sp. GAI101]
          Length = 479

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 117/379 (30%), Positives = 185/379 (48%), Gaps = 29/379 (7%)

Query: 6   WLVILYSMICCIGLLIALPNFLP----------------------QSMLDRFPSAMPKNR 43
           W  +L  + C  GL +ALPN                         ++  D +P  +P+  
Sbjct: 7   WKRVLIILTCVAGLYLALPNAFYGPVEQHNDALKAIDVAGSTPELEAQADLWPEWLPERL 66

Query: 44  ISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA 103
           ++LGLDLRGG+HL+ EV+  D     ++    E+R  L+     V  +   + ++ +   
Sbjct: 67  VNLGLDLRGGAHLLAEVNVADVYASRMEATWPEVRDALRSI-TPVRRVEAPEGELRVRIN 125

Query: 104 DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
           D+       +      + V +         ++V+  E  +++ LS           ++QS
Sbjct: 126 DTDKMAQALEVARGLARPVQTITGAGAND-IVVSGAEDILTLTLSDAEKQATDERTMQQS 184

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV----LP 219
           +EIIR+RID++G  E TIQR GS RILIQ+PG    S L+ ++GTTA+++F+ V      
Sbjct: 185 LEIIRRRIDEVGTREPTIQRQGSDRILIQVPGIGSASELKAIIGTTAQLTFNPVVNRGAD 244

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
            N+  G    +    ++ G  Y++E    ++G  L  A  +FD    +P V   FD  GA
Sbjct: 245 ANAAPGLGNSLLPDAEAPGVFYIIETAPVVTGEELVDAQPSFDQNG-RPAVSFRFDTTGA 303

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
           R+F   T +NIG P A+VLD  V++AP I  AIP G   I+GNF++E +  LA +LRAG+
Sbjct: 304 RKFGTYTAENIGAPFAIVLDDAVISAPTIQSAIPGGSGIITGNFSVEESTNLAVLLRAGA 363

Query: 340 LPIKLNIVEERNVGADLGS 358
           LP  L   +    G     
Sbjct: 364 LPAGLTFSKNAPSGQSWAR 382


>gi|297538131|ref|YP_003673900.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylotenera sp. 301]
 gi|297257478|gb|ADI29323.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylotenera sp. 301]
          Length = 1041

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/613 (13%), Positives = 177/613 (28%), Gaps = 45/613 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I      +A      +  + ++P   P               +++    
Sbjct: 8   RPIFASVLSIIIV-----LAGLAAALKLPIAQYPQIAPPT-------------VLITATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   L   EG+  F+     +    IT +F            V+ 
Sbjct: 50  PGASAETLSKTVAAPIEEQLSGVEGLLYFNSSADSSGTLTITATFEVGTDVNQATFNVSN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + ++  LV        +++            +  S       +D+I   
Sbjct: 110 RVNIALPRLPDEVRRTGLVVQKRSNDILLVVMLTDKLKKYDPLYLSNYATLNVLDEIKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P R+ QL  TT  ++    + N        G      + 
Sbjct: 170 KGVGDANIFGAQDYSMRIWLKPDRMAQLGVTTTDIANAIQVQNAQYAAGKIGQEPSPSTQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y V  K  +                 +    I   +      +      I       
Sbjct: 230 QLVYTVTAKGRL-------------IDPSEFGNIIIRADGPRGVLYLKDVARIELGSQTY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L            +   +   T +   +  A L+          V          
Sbjct: 277 NVRTALDGLPGVGIPIFLQTGANALDTADAIKVKMAELKQRFPAGVDWEVPYDTSDFVKS 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T A L + G ++   ++
Sbjct: 337 SIIEVVKTLGEAMVLVVLVVFLFLQSWRATLIPLIAVPISLIGTFAGLWIFGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIA 473
             +VL IG+ VD  I+V E +    + +  S   +      +   A   I        + 
Sbjct: 397 FAMVLSIGIVVDDAIVVLENVERLMSEEKLSPITAAIKSMEQVSGAVIAIVLVLCAVFVP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPL 528
              L    G   R FA+T+ ++++IS   A+++  A+   +++         K  +   L
Sbjct: 457 VAFLGGIAGEMYRQFAVTVAVAVVISGVVALTLTPALCAILLKSVHEESAFFKPFNRGFL 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    + +         +    +  +  I L    G     + +G +   V+    
Sbjct: 517 KLTNFYAKTVNLTLHHKFIGSLVFGAIIVVVVILLRTVPGSFVPAEDQGYVVTAVIMPDG 576

Query: 589 VDLSVVRSNLESL 601
             LS      +++
Sbjct: 577 ATLSRTTKTTQAV 589



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 72/220 (32%), Gaps = 7/220 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               L       G     +     + +K+         Q          +      I+   
Sbjct: 811  NGLLSAKVLGGGAPGVSSGEAIKMVEKVAAENLPEGYQIAWTGQAYQEKRTGSAAIMAFG 870

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             + I + + +  +F+ W   L  I  +   +   L    L G+  ++     ++TL+G +
Sbjct: 871  FAIIMVFLILAAQFETWALPLAVIMAVPFALAGALLAVLLRGMPNDIYFQIGLITLVGLA 930

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +      +   T +       ++        V TSMA  + ++P+ +  G+ 
Sbjct: 931  AKNAILIVEFA---SQKMETGMPVAQAALEAARMRFRPIVMTSMAFVLGIVPLVIASGAG 987

Query: 794  IGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +       +  G+++A   +         ++     ++
Sbjct: 988  AAARRSMGTGVFGGMILATFVATIFIPLFFTWLSGKHVRH 1027



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 2/103 (1%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T     +FG   N   + A++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPLIAVPISLIGTFAGLWIFGFSINTLTLFAMVLSIGIVVDDAIVVLENV--ER 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +    +S      KS+ +  G  +   +      +P+A  GG
Sbjct: 420 LMSEEKLSPITAAIKSMEQVSGAVIAIVLVLCAVFVPVAFLGG 462


>gi|282858989|ref|ZP_06268127.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella bivia JCVIHMP010]
 gi|282588269|gb|EFB93436.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella bivia JCVIHMP010]
          Length = 1090

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 61/574 (10%), Positives = 153/574 (26%), Gaps = 44/574 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G +      L    ++++P   P               + ++  
Sbjct: 8   KRPVLSTVISIFFVLLGAI-----GLVSLPVEQYPDIAPPT-------------ISVQTF 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L   +   E +   + +   +   +IT+ F      +  A  V 
Sbjct: 50  YSGADAQTVLNSVVVPLEESINGVENMTYMTSQATNDGMAQITIYFKQGADPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    + L  +  +  + T   +  ++++     D         +       +  +  
Sbjct: 110 NRVTQAQALLPSEVTQVGVTTGKRQSSNVIIFALTSDDGRYDEKFLTNYSDINIVPALKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +          +   +     P +++Q       ++      N       FG +     
Sbjct: 170 VKGVGNVQVFGSLTYSMRIWLQPDKMKQYNLMPQDVTAALAEQNIEAAPGKFGEQSN--- 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    I       +         +      
Sbjct: 227 -------------MAYEFTMRYKGRLKTAEEYGNIIISSNTNGQTLHLRDIAEVELGGLS 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                               A  +             +      P     +         
Sbjct: 274 YAVNMESNGKPAVIGAVQQVAGSNATDVANGVKKAFEIQAKNYPPGMKMRIVTDVTEFLY 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  +   LV +V+++ +   +  L+   ++ ++++ T   L + G ++ L +
Sbjct: 334 ASIEEVVFTLFLTLILVFLVVYVFLQDLRSTLIPLIAVPVSLMGTFLFLWMFGFSINLLT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVF--CSLDMGFSRAYSTIFDSNITALIAT 474
           ++ ++L I + VD  I+V E +  +           S+D     + + I  + + A +  
Sbjct: 394 LSALLLAIAIVVDDAIVVVEAVHAKLDLGYKSALTASIDAMNELSGAIISITLVMAAVFV 453

Query: 475 VVLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V F  G      R F +TM LSI+IS   A+++  A+   +      K+      +   
Sbjct: 454 PVSFLSGTSGTFYREFGVTMALSIVISAINALTLSPALCAIL-LKPHDKNGKEKKSTFVD 512

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
              +     F +                I    T
Sbjct: 513 RFHNAFNTAFDKVTNKYKKGVERIIKKPIITSIT 546



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/381 (9%), Positives = 115/381 (30%), Gaps = 18/381 (4%)

Query: 468  ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
               +IA       G   + G  +TM      ++   + + R  +  + +  ++       
Sbjct: 682  GAQIIAFGPPMIPGFSMINGVTMTMQDKTGGNIDKFLKVTRNFLDALQKRPEIAKAMTTY 741

Query: 528  LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-----YGIDFKGGIQLG 582
             +++      + +   +         +         ++    N     Y +  +G +   
Sbjct: 742  DTQYPQYMVDVDVIKTKQAGISPKAVLATLQGYYGGMYASNFNSYGKLYRVMIQGSVDSR 801

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +      ++ V   N  +     I+ +   G +       +   D     +        +
Sbjct: 802  LTPESLQNIYVRTPNGMTPINSFITLKRVYGPQVMKRFNLFTSIDVNITPQDGYSSGDVL 861

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVG----VIISAIAMLIYIWI---RFKWYFALG 695
              I  +S        G + S     +        +I +   + +Y+ +      +   L 
Sbjct: 862  KAIDEVSKDNLPIGYGYEYSGLTRSESEQSNTTVIIFALCIIFVYLILSAQYESYLLPLA 921

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             + ++   +     F  +FG   ++    +++ LIG    + +++ +     +    T +
Sbjct: 922  VVLSIPFGLAGAFLFTLIFGHNNDIYMQISLIMLIGLLAKNAILIVEFA---LDRRRTGM 978

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSS 812
            + R          L   + T++A  + ++P+    G               G+++     
Sbjct: 979  AIRYAAILGAGARLRPVLMTALAMIVGLIPLMFASGVGRNGNQTLGAAAIGGMLIGTLCQ 1038

Query: 813  IFIAAPILLFIYDWRAKNARI 833
            IF    +       + + + +
Sbjct: 1039 IFFVPALFTIFQSIQERISPL 1059



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 45/264 (17%), Positives = 97/264 (36%), Gaps = 13/264 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + + +N       +R   E    G     N +      V    Q       T V   
Sbjct: 245 YGNIIISSNTNGQTLHLRDIAEVELGGLSYAVNMESNGKPAVIGAVQQVAGSNATDVANG 304

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
           VKK                +   ++  L   I + +  + ++ I + + +++        
Sbjct: 305 VKKAFEIQAKNYPPGMKMRIVTDVTEFLYASIEEVVFTLFLTLILVFLVVYVFLQDLRST 364

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  +  + + +  T  F  +FG   NL  ++A+L  I   V+D +VV + +   + L   
Sbjct: 365 LIPLIAVPVSLMGTFLFLWMFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLDLGYK 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVL---PMAVWG--GSVIGSFAIPMAFGIVVA 808
           S     +   ++NE  G  +  S+   ++ +      + G  G+    F + MA  IV++
Sbjct: 425 SALTASI--DAMNELSGAII--SITLVMAAVFVPVSFLSGTSGTFYREFGVTMALSIVIS 480

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
           A +++ ++  +   +     KN +
Sbjct: 481 AINALTLSPALCAILLKPHDKNGK 504


>gi|255693816|ref|ZP_05417491.1| AcrB/AcrD/AcrF family protein [Bacteroides finegoldii DSM 17565]
 gi|260620387|gb|EEX43258.1| AcrB/AcrD/AcrF family protein [Bacteroides finegoldii DSM 17565]
          Length = 1052

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/569 (12%), Positives = 167/569 (29%), Gaps = 41/569 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSIQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     T   +S      N +  G  F +     +   + 
Sbjct: 172 TVSISGAPQREIQVYCDPNKLEAYNLTIESISSIIGAENKNIPGGNFDIGSETYALRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  +++ + +                            F      I   +       
Sbjct: 232 EFDDSRQLADVVVGTH--------------------NGANVFLRDVARIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +    +   L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISKKVAEVLPRLQKNLPSDVKIGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAISGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G +    +     M   + IS   A+S+   +    +   KK   +     +      D 
Sbjct: 452 GMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKPSKLFKLFFTPIEKTLDG 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT 566
           +   + +   W V    +     I     
Sbjct: 512 LDTWYGKMLNWAVRHRPIVITGCIAFFVV 540



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 91/245 (37%), Gaps = 7/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   +V  +    +SV  ++ +  V  ++ + +P     
Sbjct: 256 DVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISKKVAEVLPRLQKNLPSDVKI 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +         I      V+ + + ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GVIVDTSDNILNTIDSLTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AISGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++       P+ +     G +       M   + ++  +++ +   +   +   + 
Sbjct: 433 VIASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQK 492

Query: 829 KNARI 833
           K +++
Sbjct: 493 KPSKL 497



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 81/241 (33%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  +            ++  +V +      +     V    +      +P        
Sbjct: 793  KDVGRVVERFAPPTIERKDRERIVTVSAVISGAPLGNVVAAGNEIIDKMDIPGEVTIQVA 852

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G +G++I  I + I +  +F+   +    + +L    +  L      
Sbjct: 853  GSFEDQQDSFRDLGTLGILI-VILVFIVMAAQFESLTYPFIIMFSLPFAFSGVLMALFFT 911

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ ++   + LIG  V + +V+ D +          ++  + +  S    L   + 
Sbjct: 912  GSTLSVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGLAVVNSVVTSGKSRLRPVLM 968

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+    + ++PMA+ GG    +    AI +  G+ ++   ++ +   +         KN 
Sbjct: 969  TTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTISTVLTLILIPTLYCVFAGTGIKNQ 1028

Query: 832  R 832
            R
Sbjct: 1029 R 1029


>gi|28897715|ref|NP_797320.1| putative multidrug resistance protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363853|ref|ZP_05776608.1| RND transporter, HAE1/HME family, permease protein [Vibrio
           parahaemolyticus K5030]
 gi|260876887|ref|ZP_05889242.1| acriflavin resistance protein [Vibrio parahaemolyticus AN-5034]
 gi|260897971|ref|ZP_05906467.1| acriflavin resistance protein [Vibrio parahaemolyticus Peru-466]
 gi|260902173|ref|ZP_05910568.1| RND transporter, HAE1/HME family, permease protein [Vibrio
           parahaemolyticus AQ4037]
 gi|28805928|dbj|BAC59204.1| putative multidrug resistance protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308085461|gb|EFO35156.1| acriflavin resistance protein [Vibrio parahaemolyticus Peru-466]
 gi|308093707|gb|EFO43402.1| acriflavin resistance protein [Vibrio parahaemolyticus AN-5034]
 gi|308108285|gb|EFO45825.1| RND transporter, HAE1/HME family, permease protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308113878|gb|EFO51418.1| RND transporter, HAE1/HME family, permease protein [Vibrio
           parahaemolyticus K5030]
          Length = 1037

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/651 (9%), Positives = 174/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVAALVLSMLLCVFGFVS-----FTKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +    R  +D+  +     
Sbjct: 115 AQRSLPDEADDPIVYKNNGSGEASLYINLSSSE--MDRTQLTDYAERVLMDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SIDLSGGLYKVMYVKLKPELMAGRAVTASDITSALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +          +     ++           
Sbjct: 219 -----VRNDSTVMSVRTARTYNTPEDFQYLVIKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++         S   
Sbjct: 274 KSDGVVNISLGVVPQSDANPLEVAKLVRSEVDNIQKFLPEGTRLAIDYDATVFIERSIEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   I++     +     + R F   +  
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNRFNEVVDRLFSKLENG 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ--LGVLANRPVDLSVVRS 596
               ++        + L  +  +   +                 +     R  D +    
Sbjct: 514 YRSLLKGALKARLAAPLVILACMGGSYFLMNQVPAQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MSANMDIVEDRLMPLLGQGYLKSFSIQTPAFGGQAGDQTGFVIMILEDWNE 624



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L +          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARTYNTPEDFQYLVIKRASDNTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L   P        V ++V+ ++  I           +    +  + R        +
Sbjct: 279 VNISLGVVPQSDANPLEVAKLVRSEVDNIQKFLPEGTRLAIDYDATVFIERSIEEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNR 498



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        + G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMFTVPMGVFGGFLGLVVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    + F   I  +    L   + T+       +P+ V    G     +    + FG+
Sbjct: 931  QLRDRGVEFEKAIIDAAARRLRPILMTAFTTLAGAIPLIVSTGAGYESRIAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
              A   ++F+   +   I     
Sbjct: 991  GFATLVTLFVIPAMYRLISAKTQ 1013


>gi|84502249|ref|ZP_01000397.1| hypothetical protein OB2597_19636 [Oceanicola batsensis HTCC2597]
 gi|84389609|gb|EAQ02328.1| hypothetical protein OB2597_19636 [Oceanicola batsensis HTCC2597]
          Length = 1035

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/678 (11%), Positives = 187/678 (27%), Gaps = 44/678 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++   I  IGL         +  +++ P                           
Sbjct: 11  PVFATMVMVAIFVIGLFS-----YQRLPVEQLPEVDFPVV---------AVVTSYPGATP 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    ++  S L        + +   + + + F         A  V   +  + 
Sbjct: 57  EAVESDIIEVIEDSVSTLSGIETISSTAQTGSSMVLIQFQLEVDSSVAAQDVRDRIAQIQ 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L  + +   ++     E+ I+    + D         +     Q   ++       + 
Sbjct: 117 GALPDNAEDPQILRFDPSELPIISVGISSD--RYDTGTLTALAEDQLATRLSNIPGVGRA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                +  ++    DP R   L    ++++      N             + S   +  +
Sbjct: 175 SVVGGVPREVHVLIDPDRQSALGIGASEIAAALAAENTDLPAGSVTEGGSKQSVQVEGRI 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +   I +                       G           +G  LA      +L
Sbjct: 235 PALADFEEIIIAR--------------------RGGYPIRLGDVATVGTDLAEQTSLAML 274

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN-IVEERNVGADLGSDSIY 362
                           +     E      A L    L   ++  +   N      S    
Sbjct: 275 DGEQALAVDIVKTQGANTVAVAEAVREEIAALSQEPLYDGIDLEIIRDNAVPVEDSFHSV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +      A L  +++F+ +   +  ++   ++ +++I T+A +  LG TL + ++  + L
Sbjct: 335 QSMLLEGALLATVIVFLFLNSWRSTVITGLTLPISIIGTMAAIYFLGFTLNMMTMMALSL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+ +D  I+V E I       +    +   G +     +  + ++ +   + + F  G
Sbjct: 395 SIGILIDDAIVVRENIMRHLHMGKDHHTAALEGTNEIGLAVLATTLSIIAVFLPVAFMEG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP-LSRFFLIPDCI 538
              R    F IT+ +++LIS+F + ++   M           ++   P            
Sbjct: 455 ILGRFFLQFGITVSVAVLISLFVSFTLDPMMSSVWYDPSADPNVKRGPLGRLVHQFERFF 514

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                R R              I  L       G+    G +    A+   +  +     
Sbjct: 515 EWLGRRYRGLLRVALRWRKTTLITALLIFLGGLGLFPFVGAEFVPPAD---NSEMQIDLE 571

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
             +            + + ++R   +   + A         +    IV   T      + 
Sbjct: 572 MPVGTPLERTAEKIAQVDAILRDFPEVTGTYATVNSGTNSGENNAAIVVRMTDPTERELT 631

Query: 659 PKISRELIRKGIVGVIIS 676
           P      IR  +  V  +
Sbjct: 632 PTTLAPTIRDALRAVPGA 649



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 74/237 (31%), Gaps = 15/237 (6%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             +++L  L        +    +        +           E +   I   +      
Sbjct: 266 AEQTSLAMLDGEQALAVDIVKTQGANTVAVAEAVREEIAALSQEPLYDGIDLEIIRDNAV 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E     +   L+   ++  +I              W   +    TL + I  T+    
Sbjct: 326 PVEDSFHSVQSMLLEGALLATVIVF-------LFLNSWRSTVITGLTLPISIIGTMAAIY 378

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGR 771
             G   N+  + A+   IG  ++D +VV    R+N+  +            +  NE    
Sbjct: 379 FLGFTLNMMTMMALSLSIGILIDDAIVV----RENIMRHLHMGKDHHTAALEGTNEIGLA 434

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + T+++     LP+A   G +      F I ++  ++++   S  +   +    YD
Sbjct: 435 VLATTLSIIAVFLPVAFMEGILGRFFLQFGITVSVAVLISLFVSFTLDPMMSSVWYD 491



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 56/137 (40%), Gaps = 11/137 (8%)

Query: 679  AMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + IY+ +      +   L  +++L L +   +    + G   N+ ++   + L+G  V 
Sbjct: 868  VVFIYLVLASQFASFVQPLAIMSSLPLALIGVMAGLLVGGSTLNMFSIIGFIMLMGLVVK 927

Query: 736  DKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGG 791
            + +++ D    N   +    ++  D + ++        V T++A    +LP+A+    G 
Sbjct: 928  NAILLVD----NANQHRRGGMNLFDALVEAGTIRFRPIVMTTLAMIFGMLPLALNIHGGS 983

Query: 792  SVIGSFAIPMAFGIVVA 808
                  A  +  G++ +
Sbjct: 984  GQNAPMAHAVIGGLISS 1000


>gi|298385165|ref|ZP_06994724.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           1_1_14]
 gi|298262309|gb|EFI05174.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           1_1_14]
          Length = 1065

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/695 (10%), Positives = 180/695 (25%), Gaps = 51/695 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFSLPVEQYPDIAPPTIM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +        IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSTATNAGTVSITVYFKQGTDPDMAAVNVQNRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           S  I      +I       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSILQMFSLSSPDDSYDENFLSNYISINLKPEILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +            + P  + Q     + ++      N       FG            
Sbjct: 175 DLMIMGGEYSMRVWMK-PDVMAQYKLIPSDITGVLAEQNIESATGSFGENSNETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                 I           
Sbjct: 234 YKGRLI----------------TPEEFGDIVIRSTDNGEVLKLKDIAEIQLGQDSYAYHG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +     +         R              +      S   
Sbjct: 278 GMDGHPGVSCMVFQTAGSNATEVNQNIDKFLEEARKDLPKGVELTQMMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    + +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDFRSTLIPLVGVIVSLIGTFAFMAVAGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIIVVEAVQARFDVGYRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSI 523
            G        F +TM +++ IS   A+++  A+   +                 +  K+ 
Sbjct: 458 GGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLKPYINEDGTQKNNFAARFRKAF 517

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +           + + I   R       +     +    +  T       + +G + + V
Sbjct: 518 NSAFDILIEKYKNVVLIFIKRRWLAWSLLVCSVVLLVFLMNTTKTSLVPDEDQGVVFVNV 577

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L+     +E ++   +        +            S     +L++      
Sbjct: 578 STAAGSSLTTTDEVMERIEKRLMDIPQIKHVQKVAGYGLLAGQGSSFGMLILKLKSWDER 637

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +       V  + +  +    +  +    I
Sbjct: 638 PNDEDNVQAVIGQVYGRTAD-IKDASVFAISPGMI 671



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 98/280 (35%), Gaps = 9/280 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S   +               I  +    + + +    ++  ++   E     D    +  
Sbjct: 219 SFGENSNETYQYTMKYKGRLITPEEFGDIVIRSTDNGEVLKLKDIAEIQLGQDSYAYHGG 278

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG--- 669
            + +  V            T V + + K + E                 +  L       
Sbjct: 279 MDGHPGVSCMVFQTAGSNATEVNQNIDKFLEEARKDLPKGVELTQMMSSNDFLFASIHEV 338

Query: 670 IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +  +I + I +++ +++    +   L  +  +I+ +  T  F A+ G   NL  + A++ 
Sbjct: 339 VKTLIEAIILVILVVYVFLQDFRSTLIPLVGVIVSLIGTFAFMAVAGFSINLLTLFALVL 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           +IG  V+D ++V + ++    +   S     +   ++       + +S+      +P++ 
Sbjct: 399 VIGTVVDDAIIVVEAVQARFDVGYRSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSF 456

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            GG+       F + MA  + ++A +++ ++  +   +  
Sbjct: 457 MGGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLK 496



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 76/253 (30%), Gaps = 12/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E   +
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGDAIKAVQETAVQ 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I  GI  ++I  I   +Y      +      + ++
Sbjct: 850  SLPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALY----ESFIIPFAVLLSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRD 759
               +  +  F  +FG+E N+     ++ LIG      +++     +         +    
Sbjct: 906  PCGLMGSFLFAWMFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERRKAGMGLIA 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +    L   + T++     + P+ +    G +   S    +  G+ +   + +FI 
Sbjct: 962  SAVSAAKARLRPILMTALTMIFGLFPLMLSSGVGANGNRSLGTGVVGGMTIGTLALLFIV 1021

Query: 817  APILLFIYDWRAK 829
              + +     + +
Sbjct: 1022 PTLFIAFQWLQER 1034


>gi|153838656|ref|ZP_01991323.1| acriflavin resistance protein [Vibrio parahaemolyticus AQ3810]
 gi|149747934|gb|EDM58800.1| acriflavin resistance protein [Vibrio parahaemolyticus AQ3810]
          Length = 1037

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/651 (9%), Positives = 174/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVAALVLSMLLCVFGFVS-----FTKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +    R  +D+  +     
Sbjct: 115 AQRSLPDEADDPIVYKNNGSGEASLYINLSSSE--MDRTQLTDYAERVLMDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SIDLSGGLYKVMYVKLKPELMAGRAVTASDITSALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +          +     ++           
Sbjct: 219 -----VRNDSTVMSVRTARTYNTPEDFQYLVIKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++         S   
Sbjct: 274 KSDGVVNISLGVVPQSDANPLEVAKLVRSEVDNIQKFLPEGTRLAIDYDATVFIERSIEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   I++     +     + R F   +  
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNRFNEVVDRLFSKLENG 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ--LGVLANRPVDLSVVRS 596
               ++        + L  +  +   +                 +     R  D +    
Sbjct: 514 YRSLLKGALKARLAAPLVILACMGGSYFLMNQVPAQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MSANMDIVEDRLMPLLGQGYLKSFSIQTPAFGGQAGDQTGFVIMILEDWNE 624



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L +          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARTYNTPEDFQYLVIKRASDNTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L   P        V ++V+ ++  I           +    +  + R        +
Sbjct: 279 VNISLGVVPQSDANPLEVAKLVRSEVDNIQKFLPEGTRLAIDYDATVFIERSIEEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNR 498



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        + G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMFTVPMGVFGGFLGLVVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    + F   I  +    L   + T+       +P+ V    G     +    + FG+
Sbjct: 931  QLRDRGVEFEKAIIDAAARRLRPILMTAFTTLAGAIPLIVSTGAGYESRIAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
              A   ++F+   +   I     
Sbjct: 991  GFATLVTLFVIPAMYRLISAKTQ 1013


>gi|170745275|ref|YP_001766732.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170658876|gb|ACB27930.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium radiotolerans JCM 2831]
          Length = 1054

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 64/549 (11%), Positives = 148/549 (26%), Gaps = 39/549 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  IG +  L        + +FP   P               + ++   
Sbjct: 8   RPVLAAVISVLITLIGAVAGL-----TLPIAQFPEIAPPI-------------INIQATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +  L   +        I   S       +  +F      +  A +V  
Sbjct: 50  PGASAQQAYDAVTTPLEQEINGAQHLLYIASTSNTDGSVNLDATFEIGSDLDAAAAEVLT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIV-LSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                 +KL    +   L         +  +            +  +     Q I  +  
Sbjct: 110 RANRAEAKLPASVRAQGLEIQKSSRQRLGNIVLYADPGAPYDELFLANWAETQVIKPLRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +     +    +    DP ++  L  +   +       N        G      +
Sbjct: 170 VDGMGRIQNFSQKRYAMRLWLDPVKMEALAISPDAVIRAVSQQNEQITTGSLGKPP---T 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           DG     E +V   G            +  +    +                 +      
Sbjct: 227 DGAPTAFELQVVTQGR---------LSQPQEFANILLRANPDGSVVRVRDVARVELGSEQ 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +    ++      A L     P     +         
Sbjct: 278 YGVRSSFDGEPSATLGLYQTPGANAVHVMDGVKATMAELARRFPPGLKYKIALDRTEFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV++V ++ +   +  L+   ++ + ++ T   ++LLG +    S
Sbjct: 338 EAIREVVHTLFEALILVVVVTYLFLQNWRATLIPSIAVPVALVGTFGPMALLGFSFNTLS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL +GL VD  I+V E       +      +     +     +  + +      V 
Sbjct: 398 LLGLVLAVGLVVDDAIIVVENTERLMDEGMEPRPAAREAVNEVAGPVIATTLVLAALFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G     FA+T+ +S++IS   ++++  A+   I++++   +       R  L
Sbjct: 458 VAFIPGLTGQLYNQFALTIAISVMISAVVSLTLTPALCGLILKHRPEGAGAHRSRWRAPL 517

Query: 534 IPDCIAIQF 542
                 ++ 
Sbjct: 518 RWFNRTLER 526



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 89/229 (38%), Gaps = 9/229 (3%)

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
             +           L   Q    ++V     ++    ++    P        +   +  R
Sbjct: 278 YGVRSSFDGEPSATLGLYQTPGANAVHVMDGVKATMAELARRFPPGLKYKIALDRTEFVR 337

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           E IR+ +  +  + I +++  ++  + W   L     + + +  T G  AL G  FN  +
Sbjct: 338 EAIREVVHTLFEALILVVVVTYLFLQNWRATLIPSIAVPVALVGTFGPMALLGFSFNTLS 397

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
           +  ++  +G  V+D ++V     +N  +L    +  R    +++NE  G  + T++    
Sbjct: 398 LLGLVLAVGLVVDDAIIVV----ENTERLMDEGMEPRPAAREAVNEVAGPVIATTLVLAA 453

Query: 782 SVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +P+A   G        FA+ +A  ++++A  S+ +   +   I   R
Sbjct: 454 LFVPVAFIPGLTGQLYNQFALTIAISVMISAVVSLTLTPALCGLILKHR 502



 Score = 39.3 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/162 (11%), Positives = 59/162 (36%), Gaps = 9/162 (5%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              +   +  + + + +  +++        +    + I   +GF A+ G+E ++     +L
Sbjct: 874  APLIFGLGVLMIFLLLAGQYESLRLPFVILLATPIAIFGAVGFLAVRGLELDIFGQIGLL 933

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G +  + +++     ++++              +    +   + TS A     +P+A
Sbjct: 934  LLVGLAAKNSILLVS-FAEDLR--RQGEDVLKAAQDAARLRMRPILMTSFAFITGSIPLA 990

Query: 788  VWGGSVIGSFAIPMAFGIVVAASS----SIFIAAPILLFIYD 825
            +  G+   +  + M   ++         ++FI     +    
Sbjct: 991  IASGAGAHA-RVSMGTVVIGGLVVATFITLFITPTFYVAFER 1031


>gi|146300972|ref|YP_001195563.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Flavobacterium johnsoniae UW101]
 gi|146155390|gb|ABQ06244.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Flavobacterium johnsoniae UW101]
          Length = 1050

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/546 (12%), Positives = 158/546 (28%), Gaps = 38/546 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G++      L +  + RFP   P   +  G    GG       + 
Sbjct: 8   RPVLATVISIVLVILGII-----GLTRLSVTRFPDISPPTVMVSG-SYPGG-------NS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
           +  +   +    +++ + ++       +     +  I++ F      +  A  V   +Q 
Sbjct: 55  ETVIRSVVTPLEEQI-NGVENMQYIKSTASNDGSFSISVIFKQGIDPDQAAVNVQNRVQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-VISHAIEQSMEIIRQRIDQIGISEST 180
              KL  +  +  L T+ ++   IV+     D       +          + Q+      
Sbjct: 114 ATPKLPQEVVRMGLTTSKQQNSMIVIFNLYTDDNNKYDELFLQNYANINLVPQLKRVPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q     +    +    DP ++       + ++      +        G       +   
Sbjct: 174 GQVQIFGQKDYSMRIWLDPRKMANAGLVPSDVTQAIAEQSLESAPGKLGEESKAALE--- 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                     +   +I     G           +          
Sbjct: 231 --------------YVIRYKGKKNKPEQYENIVVKNNGGSLLRLKDVARVEFGSISYSGD 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
               +           +  + N            L     P    +           +  
Sbjct: 277 NKSNSLNAVTMAILQTSGSNANDIEIGVNKEVERLSKSFPPGIKYVNVMSTKERLDEATG 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T      LV IV+F+ +   +  ++   ++ + ++ T   L + G T+ + ++  +
Sbjct: 337 QVKSTLIEAFILVFIVVFIFLQDIRSTIIPAIAVPVAIVGTFFFLLVFGFTINILTLFAL 396

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS-----LDMGFSRAYSTIFDSNITALIATV 475
           VL IG+ VD  I+V E +  +  ++ S+             + A  +I        I   
Sbjct: 397 VLAIGIVVDDAIVVVEAVHSKMEEDSSLTAKEATHGAMAEITGAVISITLVMSAVFIPIG 456

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            +    G   + FA T+ ++I+IS   A+++  A+   +++         N     F   
Sbjct: 457 FMTGSSGIFYKQFAYTLAIAIIISAVNALTLTPALCALLLKNVHNGEHGKNEHKTTFKER 516

Query: 536 DCIAIQ 541
             I   
Sbjct: 517 FFIGFN 522



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 82/197 (41%), Gaps = 7/197 (3%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            + +E + K     +    + +T+    + + ++    I   I+  I + I++       
Sbjct: 305 NKEVERLSKSFPPGIKYVNVMSTKERLDEATGQVKSTLIEAFILVFIVVFIFLQ---DIR 361

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +     + + I  T  F  +FG   N+  + A++  IG  V+D +VV + +   M+  
Sbjct: 362 STIIPAIAVPVAIVGTFFFLLVFGFTINILTLFALVLAIGIVVDDAIVVVEAVHSKMEE- 420

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
            +S++ ++    ++ E  G  +  ++      +P+    GS       FA  +A  I+++
Sbjct: 421 DSSLTAKEATHGAMAEITGAVISITLVMSAVFIPIGFMTGSSGIFYKQFAYTLAIAIIIS 480

Query: 809 ASSSIFIAAPILLFIYD 825
           A +++ +   +   +  
Sbjct: 481 AVNALTLTPALCALLLK 497



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + ++   I          G++ N+     ++ L+G    + +++ +     +
Sbjct: 897  SYLLPLAVLLSIPTGILGAFAGIKAVGLDNNIYVQVGLIMLVGLLAKNAILIVEFA---L 953

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGI 805
            +     ++  +   +     L   + TS+A  + ++P+    G       S ++  + G+
Sbjct: 954  QRRNAGLTITEAALEGAKSRLRPIIMTSLAFIVGMIPLMFASGGTAVGNRSISVSASIGM 1013

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +      +F+   + +     + K
Sbjct: 1014 LSGVILGVFVIPLLFIVFQYLQEK 1037


>gi|193212936|ref|YP_001998889.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chlorobaculum parvum NCIB 8327]
 gi|193086413|gb|ACF11689.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chlorobaculum parvum NCIB 8327]
          Length = 1061

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/600 (11%), Positives = 152/600 (25%), Gaps = 46/600 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +GL+      + Q  + RFP   P               + +    
Sbjct: 8   RPVLATVISVILVILGLVS-----MNQLSITRFPDIAPP-------------SVSVTASY 49

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +        +E  + ++       +     +  I + F      +  A  V  
Sbjct: 50  PGANAETVGRTVAPPLEEAINGVENMTYMTSTSSNDGSLSINVFFKQGTDPDQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  +  +  + T   +   I+L   +       A           +D +   
Sbjct: 110 RVAQATSRLPAEVNQIGVSTIKRQNSQIMLINLSSSVKAFDATFLQNYAKINIVDALARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q     ++   +     P+++     +  ++S      N       FG        
Sbjct: 170 PGVGQVAVYGKMDYAMRVWLRPAQMAAYGLSPQEVSAAIQSQNLEAAPGEFGQMSDAPMQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                     +       +                 +       
Sbjct: 230 YVMKYRGK----------------FERPEDYENIVIRANPDGSLLRLKDIARVEFAAYSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 + N        +               +   +      
Sbjct: 274 TVNAKANGQPSAVMAVYQAPGSNANEVETQLREVLEKASRSFPTGVEYAIPFSSKKVVDE 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV +V+F+ +   +  L+   ++ + +I T   ++L G ++ + ++
Sbjct: 334 SIEQVQHTLIEAFLLVFLVVFLFLQDFRSTLIPAIAVPVAIIGTFFFMNLFGFSINVLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIA 473
            G+VL IG+ VD  I+V E +  +   K      +        + A  TI     +  + 
Sbjct: 394 FGLVLAIGIVVDDAIVVVEAVHAKIEEKGYPAKVATVSAMREITTAIVTITLVMASVFLP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              L    G   R FA T+ ++ILIS   A+++  A+    +     +            
Sbjct: 454 VGFLEGSTGVFYRQFAFTLAIAILISAVNALTLSPALCAIFLTDLHSEEKHSRFGGFAGR 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   F   R      S +        +   G    +               +    
Sbjct: 514 FVKGFNAGFDAVRQR---YSGILDYFMRHRMVAFGALAVVTAVAFWMFQTTPTGFIPDED 570



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 70/246 (28%), Gaps = 9/246 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + S     + ++      +     +   L                 + ++          
Sbjct: 793  NASGEMVPVSAIITLKRVYGPDAVDHFNLFNAISINAMPAPGYSTGQAIQAVEEVSRTNL 852

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITK 706
                T     +   E+   G +  I     + +Y     +   +   L  + ++   +  
Sbjct: 853  PTGFTYDWKGQSREEIESSGGLFFIFLLSVVFVYFLLSALYESYLLPLAVMFSIPTGLLG 912

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                  L GIE N+    A++ LIG    + +++ +     ++     +   D       
Sbjct: 913  VFIGIKLAGIENNIYVQVAIIMLIGLLAKNAILIVEFA---LQRRLAGMPLVDAAMAGAR 969

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + TS+A    +LP+    G       S       G+ +     I +   + +  
Sbjct: 970  ARLRPILMTSLAFVAGLLPLLFVTGPAALGNHSIGASAIGGMFIGMVLGILVVPVLFVAF 1029

Query: 824  YDWRAK 829
               + +
Sbjct: 1030 QGLQER 1035



 Score = 39.3 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + I  T  F  LFG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 359 DFRSTLIPAIAVPVAIIGTFFFMNLFGFSINVLTLFGLVLAIGIVVDDAIVVVEAVH--A 416

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           K+       +     ++ E     V  ++      LP+    GS       FA  +A  I
Sbjct: 417 KIEEKGYPAKVATVSAMREITTAIVTITLVMASVFLPVGFLEGSTGVFYRQFAFTLA--I 474

Query: 806 VV 807
            +
Sbjct: 475 AI 476


>gi|332883874|gb|EGK04154.1| hypothetical protein HMPREF9456_01182 [Dysgonomonas mossii DSM
           22836]
          Length = 1050

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 70/648 (10%), Positives = 174/648 (26%), Gaps = 42/648 (6%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIGV 88
            ++++P   P               + +           +       +   L    G+  
Sbjct: 32  PIEQYPQITPPV-------------VKIGASYPGANATTVSQAVATPIEQELNGTPGMIY 78

Query: 89  FSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
                  +    IT++F  +   +  A ++   ++   S+L  +  +  +    +    +
Sbjct: 79  MESSSSNSGGLSITVTFDVNTNADLAAVEIQNRVKLAESRLPAEVLQGGISVEKQAPGQL 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +      D      I  S       +D I       +          +     P RL   
Sbjct: 139 MTIALTSDDPKYDEIYLSNYATINILDVIRRIPGVGRVSNVGSRYYGMQIWVYPDRLASF 198

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T   +       N        G + +   D                +           
Sbjct: 199 GLTVKDLQDALKDQNRESAAGELGKQPIVHVDVT--------------MPITAQGRLSTV 244

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                 +    +       L                +     
Sbjct: 245 SEFEDIVVKANNDGSFIRMRDVARVSLEASSYSTESGLNGKYATMLSIYLLPGANAMEVA 304

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        ++         ++          S      T      LV+IV+F+ +   +
Sbjct: 305 DEIKAAMGNIKQDFPEGLDYLIPFDMTEYIGESIHEVYKTLFEALTLVIIVVFLSLQNWR 364

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK- 444
             ++   ++ +++I T   + ++G +L + ++ G+VL IG+ VD  I+V E +     + 
Sbjct: 365 AAIIPIVAVPISLIGTFGFMLIMGFSLNMLTLLGLVLAIGIVVDDAIVVVENVERIMEQK 424

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMF 501
             S   +           +  +++      V + F     G   R F++T+ +S+LIS  
Sbjct: 425 GVSAREATHRAMKELTGALIATSLVLAAVFVPVSFLDGITGALYRQFSVTIVVSVLISAV 484

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI------QFMRARFWGVGISIL 555
            A+++  AM   I++  K K   I      +L                  R       ++
Sbjct: 485 VALTLSPAMCAIILKPSKKKKHFIFRKINIWLGNGNKKYANILLKVINNPRRTMAAFGMV 544

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                +            + +G   + +       L  +R+  +       + +  +  +
Sbjct: 545 LVFIFVLNKIVPTSFIPQEDQGYFTVELEMPEGTTLERMRTVTDRAVAYLDNHEAVEYVQ 604

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
           N          +    T  + +   K         +++ +        
Sbjct: 605 NVTGSSPRVGTNQGRTTLTVILKPWKERSTGVDQVMRDAQKEFYNYPE 652



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 89/258 (34%), Gaps = 9/258 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V AN       +R                     +   L            V + +K 
Sbjct: 250 IVVKANNDGSFIRMRDVARVSLEASSYSTESGLNGKYATMLSIYLLPGANAMEVADEIKA 309

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWYFALGA 696
            +  I          ++   ++  +             A+ + I + F     W  A+  
Sbjct: 310 AMGNIKQDFPEGLDYLIPFDMTEYIGESIHEVYKTLFEALTLVIIVVFLSLQNWRAAIIP 369

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           I  + + +  T GF  + G   N+  +  ++  IG  V+D +VV + +     +    +S
Sbjct: 370 IVAVPISLIGTFGFMLIMGFSLNMLTLLGLVLAIGIVVDDAIVVVENV--ERIMEQKGVS 427

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            R+   +++ E  G  + TS+      +P++      G++   F++ +   ++++A  ++
Sbjct: 428 AREATHRAMKELTGALIATSLVLAAVFVPVSFLDGITGALYRQFSVTIVVSVLISAVVAL 487

Query: 814 FIAAPILLFIYDWRAKNA 831
            ++  +   I     K  
Sbjct: 488 TLSPAMCAIILKPSKKKK 505



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 87/291 (29%), Gaps = 9/291 (3%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
                  S+  +  ++                     +        S     L +L     
Sbjct: 741  MKAYLGSVYVNDFNMFNRIYKVYIQADQSYRATASDINLFFVKTKSGDMVPLTALGKTSY 800

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
            +    +  +  +           A     + + +                      +E  
Sbjct: 801  TTGPGNISRFNMYTSASMQVTPSAGHSSGQAMSEIANIAKEHLPANIGIAWSGLSFQEQK 860

Query: 667  RKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
              G  G ++  + + +++    +   W   +  I +L +          + G++ ++   
Sbjct: 861  ASGQTGTVLVLVLIFVFLFLAALYESWTVPISVILSLPIAALGAFIGIWILGLDNDVYFQ 920

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++TLIG +  + +++ +  +         +       ++        + TS+A  + +
Sbjct: 921  IGLVTLIGLAAKNAILIVEFAK---IQVDAGMQPIFAAMQAAKLRFRPILMTSLAFVLGM 977

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            LPM +    G +   S    + FG++VA +  I +     + +Y  + K  
Sbjct: 978  LPMVIASGPGSASRHSIGTGVFFGMIVAITLGIILVPFFFVIVYKVKDKFK 1028


>gi|329956758|ref|ZP_08297331.1| RND transporter, HAE1 family [Bacteroides clarus YIT 12056]
 gi|328524130|gb|EGF51206.1| RND transporter, HAE1 family [Bacteroides clarus YIT 12056]
          Length = 1064

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 72/694 (10%), Positives = 182/694 (26%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVILGII-----GLFTLPVEQYPDIAPPTIM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +        IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSTASNAGTVSITVYFKQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           +  I      QI       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSILQMFSLHSPDDSYDENFLANYISINLKPQILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +     P  + Q     + ++      N       FG            
Sbjct: 175 DMMIMG-GDYSMRIWMKPDIMAQYKLIPSDVTAVLAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                ++           
Sbjct: 234 YTGRLI----------------TPEEFGDIVIRSTEDGEVLKLKDIADVELGKDSYAYKG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +          L   +               +      S   
Sbjct: 278 TMDGHAGISCMIFQTAGSNATEVNRQIDELLEEVSKDLPKGVELTQMMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I +++I T A +S+ G ++ L ++  +V
Sbjct: 338 VVKTLIEAILLVILVVYVFLQDIRSTLIPLVGIIVSLIGTFAFMSVAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 GGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALLLKPYINEDGTQKQNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        I + F++ R+    +     +  + L+ T       D   G+    +
Sbjct: 518 NAAFDILVEKYKKIVLLFIKRRWLSWSLLACSVVLLVFLMNTTKTGLVPDEDQGVLFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +  P       +++       +           +       G   +   ++  +K     
Sbjct: 578 STAPGSSLKTTNDIMDRIEQRLEGIPQKLHLQKVAGYGLLSGQGNSFGMIILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    +  +    I
Sbjct: 638 TDDEDQVQAVINQIYARTADIKDATVFAIAPGMI 671



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 87/201 (43%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +     +LE V K + + V L+ + ++         E+++  I  +++  + + +++   
Sbjct: 301 NRQIDELLEEVSKDLPKGVELTQMMSSNDFLFASIHEVVKTLIEAILLVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  +I+ +  T  F ++ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 359 -DIRSTLIPLVGIIVSLIGTFAFMSVAGFSINLITLFALVLVIGTVVDDAIVVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++  GG+       F + MA  
Sbjct: 418 FDVGYKSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +   +  
Sbjct: 476 VGISAVNALTLSPALCALLLK 496



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 76/267 (28%), Gaps = 12/267 (4%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                          + +       LS   S   S     +S  N                
Sbjct: 776  PKFRMDEASLDNAFVRMSNGEMAPLSQFVSLTRSYGAESLSRFNMFNSIAVNAMPAEGYS 835

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   V E   + + +         T     +    +I  GI  ++I  I   +Y   
Sbjct: 836  TGDAIRAVQETAAEALPKGYGYDFGGITREESQQSGTTVIIFGICILMIYLILSALY--- 892

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               +      I  + + +  +  F  L G+E N+     ++ LIG      +++     +
Sbjct: 893  -ESFIVPFAVIFAVPVGLMGSFLFAKLMGLENNIYLQTGLIMLIGLLAKTAILLT----E 947

Query: 747  NMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
                     +        +    L   + T++     +LP+ V    G +   S      
Sbjct: 948  YAAERRKAGMGLIASAVSAAKARLRPILMTALTMIFGLLPLMVATGVGANGNRSLGTGAV 1007

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G+V+   + +FI   + +     + +
Sbjct: 1008 GGMVIGTLALLFIVPALFVTFQWLQER 1034


>gi|253566713|ref|ZP_04844166.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|251944885|gb|EES85360.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 1052

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 67/528 (12%), Positives = 158/528 (29%), Gaps = 40/528 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEYGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP +L     T   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPGKLEAYNLTIETISSIIGAENKNIPGGNFDIGNETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  ++  + +                            +      +   +       
Sbjct: 232 EFDDSRQLEDVVVGSY--------------------NGANVYLRDVARVVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVKGAMIVVQKQSGANSVDISKKVAEALPKLQKNLPSDVKLGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LAETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAVTGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           G +    +     M   + IS   A+S+   +   ++R +K +S    
Sbjct: 452 GMSGVMFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKQSRTFK 499



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 92/249 (36%), Gaps = 7/249 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V   +++++       N   +   +V  +    +SV  ++ +     K+ + +P
Sbjct: 251 NVYLRDVARVVDTVEERAQETYNNGVKGAMIVVQKQSGANSVDISKKVAEALPKLQKNLP 310

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                   +         I      V+ + + ++I +++   +W   L    T+ L +  
Sbjct: 311 SDVKLGVIVDTSDNILNTIDSLAETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIA 370

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           +  + A+ G   N+ +++++   IG  V+D +VV + +             +       N
Sbjct: 371 SFIYLAVTGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTN 427

Query: 767 ETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++       P+  V G  G +       M   + ++  +++ +   +   +
Sbjct: 428 EVAISVIASTLTMIAVFFPLTMVSGMSGVMFKQLGWMMCAIMFISTVAALSLTPMLCSQL 487

Query: 824 YDWRAKNAR 832
              + K +R
Sbjct: 488 LRLQKKQSR 496



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 76/241 (31%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L  +            ++  +V +            V           +P        
Sbjct: 793  KELGKVVERFAPPTIERKDRERIVTVSAVISGEALGNVVNAGNAIIDKMDIPSDVTIQVA 852

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + ++I  + + I +  +F+   +    + +L    +  L      
Sbjct: 853  GSYEDQQDSFRDLGTLAILI-VVLVFIVMAAQFESLTYPFIIMFSLPFAFSGVLMALFFT 911

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                ++ ++   + LIG  V + +V+ D +          ++  + +  +    L   + 
Sbjct: 912  KSTLSVMSLLGAIMLIGIVVKNGIVLIDYI---TLCRERGLAVLNSVVTAGKSRLRPVLM 968

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+    + ++PMA+ GG    +    AI +  G+ V+   ++ +   +         K+ 
Sbjct: 969  TTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTVSTILTLVLIPTLYCVFAGTGIKHQ 1028

Query: 832  R 832
            R
Sbjct: 1029 R 1029


>gi|307132022|ref|YP_003884038.1| multidrug efflux system, subunit C [Dickeya dadantii 3937]
 gi|306529551|gb|ADM99481.1| multidrug efflux system, subunit C [Dickeya dadantii 3937]
          Length = 1029

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 71/646 (10%), Positives = 156/646 (24%), Gaps = 38/646 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GLL           +   P                     L    
Sbjct: 10  RPVATTLLALAIALCGLL-----GYQLLPVSPLPQVDYPVI---------SVTATLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               +I L FA  R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSMSSLGNTRIILQFALERDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q   ++   +    
Sbjct: 116 QSLLPSSMPSRPYYRKVNPSDAPIMI-MTLTSDTYGPGQLYDYASTQIAQRVSQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  +                   
Sbjct: 175 VTIGGSSLPAVRVALNPQALFNQGVSLDAVRQSIAQSNVRQPLGSVDSGGTHYQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++                           +                 +   +  VL+  +
Sbjct: 235 LKTA--------------------DVYRSLIVHYNNGAPVRLSDVATVKDSVQNVLNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +       +   T++        L+A         + +        S    
Sbjct: 275 TNAKPAILVMIRRAPDANIISTVDAIRASLPELQAMLPASINLDIAQDRSPTIRASLRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +  I   LV++V+F+ +  G+  L+   ++ +++I T + + L G +L   S+  + +
Sbjct: 335 ERSLTIAVSLVILVVFLFLRSGRATLIPAIAVPVSLIGTFSAMYLCGFSLNNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E I            +   G      T+   +++ +   + L F  G
Sbjct: 395 ATGFVVDDAIVVLENISRHIEAGMKPLQASLQGVREVGFTVVSMSLSLIAVFIPLLFMDG 454

Query: 483 GA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R F+IT+ ++ILIS+  +I++   M   ++R    +S          L+     
Sbjct: 455 LPGRLFREFSITLSVAILISLLVSITLTPMMCARLLRPHAPRSQPRTRGFNRLLLGLQQG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                         ++  +     L               Q        +      S   
Sbjct: 515 YGRSLRWVLNHSRWVMMVLLGTIGLSVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQA 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             +           +        +  G       +   +K      
Sbjct: 575 MKRKLQDFMTIVRADPAVDNVTGFTGGMRTNSGSMFISLKPLAQRD 620



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 66/204 (32%), Gaps = 6/204 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            ++R             +   + +    +     +   +   P I   L        I  
Sbjct: 283 VMIRRAPDANIISTVDAIRASLPELQAMLPASINLDIAQDRSPTIRASLRDVERSLTIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           ++ +L+           L     + + +  T     L G   N  ++ A+    G+ V+D
Sbjct: 343 SLVILVVFLFLRSGRATLIPAIAVPVSLIGTFSAMYLCGFSLNNLSLMALTVATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
            +VV + +    +     +       + + E     V  S++     +P+       G +
Sbjct: 403 AIVVLENI---SRHIEAGMKPLQASLQGVREVGFTVVSMSLSLIAVFIPLLFMDGLPGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
              F+I ++  I+++   SI +  
Sbjct: 460 FREFSITLSVAILISLLVSITLTP 483



 Score = 39.3 bits (89), Expect = 2.7,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 101/306 (33%), Gaps = 20/306 (6%)

Query: 544  RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             AR      S+   + +          Y    +  + + V      D S +         
Sbjct: 713  MARLGINVSSVNTLLNNAFGQRQISTIYQPMNQYKVVMEVDPAYTQDPSSLDKMFVINND 772

Query: 604  GDISFQNFDGEKNF--------------LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            G     +F                         +   +  + +     +++ +T +    
Sbjct: 773  GKPIPLSFFARWQPANAPLAVNHQGLSAAATFSFNLPEGASLSDATTAIERTMTALGVPP 832

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
            T++          ++     +V +I + + + I + I ++     L  ++TL       L
Sbjct: 833  TVRGQFAGTALAFQQSQHSQVVLIIAAILTVYIVLGILYENVAHPLTILSTLPSAGVGAL 892

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                LF   F+L A+  +L LIG    + +++ D     +      +  R+ I ++    
Sbjct: 893  LALELFDKPFSLIALIGILLLIGIVKKNAIMMVD--FALVAQREGKLPAREAIFRACMLR 950

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + T+MAA    LP+ +    G  +     I +  G+V++   +++    + LF   
Sbjct: 951  FRPIMMTTMAALFGALPLVLSSGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDR 1010

Query: 826  WRAKNA 831
             + +  
Sbjct: 1011 LQWRRR 1016


>gi|269219372|ref|ZP_06163226.1| protein-export membrane protein SecD [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269211165|gb|EEZ77505.1| protein-export membrane protein SecD [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 729

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 134/666 (20%), Positives = 241/666 (36%), Gaps = 45/666 (6%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI 94
             P+    L LDL+GG+ ++L     D  +     +    + +R  +   G+    +   
Sbjct: 42  WAPE----LALDLQGGTQIILTPETTDNSEITQSDVNQAIEVIRQRVDASGVAEAEISSQ 97

Query: 95  QNKITLSFADSRFKENIADKVTL----FLQGVNSKLNVDPKKNLLVTTTEK--------- 141
             K  +     R  E     V       ++ V +              +           
Sbjct: 98  GGKNIIVGLPGRPSEQTLRLVRTSAVMRMRPVLAIAGDAGSLTPAKVASIDKQQKEAQKS 157

Query: 142 -----EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI-GISESTIQRLGSHRILIQLPG 195
                  S   S +           ++     +        ++       S +   +   
Sbjct: 158 ASPSASASPSASPSPSTSATPTPDPKATYGTEELKKVAREKADENHDGKISDQPKSKPTN 217

Query: 196 EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----RDSDGNQYLVEDKVEISG 251
             D    R    T   +      P++         + L    R        +    EI G
Sbjct: 218 ASDADNWRTEKLTYDALVLDCTKPSSKLNIVDDPKKPLVACDRSRGQATKYILGPAEIEG 277

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             L  A++ FD ++++ +V I FD  G + F +VTR  +           VL   VI+ A
Sbjct: 278 TQLTKASSGFDQRSNQWIVQIQFDSKGTKAFADVTRRLVKLQRPRNQFAVVLDGSVISSA 337

Query: 312 IP-----SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            P      G+AQISG+FT +TA  LA  L  GSLP+K N+  E  + A LGS+S+  G  
Sbjct: 338 APSEVISGGQAQISGSFTDQTAKTLANQLSFGSLPLKFNVQSEEQISATLGSESLRGGLI 397

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIAGIVL 422
           A   G+ L+ L+++  Y   G+VA  SI L   L+  +++L+  T+    ++  + G ++
Sbjct: 398 AGAIGVALLALYLLWTYHGLGIVAIGSIALATGLSYLIVALMSWTIGYRLSMAGVVGFII 457

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+  DS I+  ERIR+E R+ +SV  ++  G+ RA  TI+ ++ T L+ ++VL+F   
Sbjct: 458 SIGITADSFIVFFERIRDEIREGRSVRAAVTHGWHRAKRTIYVADGTNLLCSLVLYFLAV 517

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
           G+VRGFA T+GL+ ++ +   +     +M  ++R                          
Sbjct: 518 GSVRGFAFTLGLTTILDLVVVVMFTYPVMAILVRGSF---FGEGHRWSGMSAIALGNAPA 574

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
              R      S       + +      +        +      +   D    RS  +S +
Sbjct: 575 YSGRGSFRRRSDRHVDVKLVVD--EESSGSAVDTAVVVTEYSEDDGADAPGSRSPEDSSE 632

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKI 661
               S +    +  F  R       + A+    +      + +          E+   + 
Sbjct: 633 NRAASSRRSRKDVGFSRRGSAHSRKTEAEEDDAIGAGANSVNDEEASHPKPREELSEEEK 692

Query: 662 SRELIR 667
              L  
Sbjct: 693 GLSLAE 698



 Score = 98.6 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 67/205 (32%), Gaps = 8/205 (3%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    QT      +     +     +Q+ E +   +  E +R G++   I    + +Y+
Sbjct: 351 SGSFTDQTAKTLANQLSFGSLPLKFNVQSEEQISATLGSESLRGGLIAGAIGVALLALYL 410

Query: 685 WIRFKWYFALGAITTLILDITK---TLGFFAL-FGIEFNLTAVAAVLTLIGYSVNDKVVV 740
              +     + AI ++ L        +   +   G   ++  V   +  IG + +  +V 
Sbjct: 411 LWTYH-GLGIVAIGSIALATGLSYLIVALMSWTIGYRLSMAGVVGFIISIGITADSFIVF 469

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++R+R  ++      S R  +    +              +  L +       +  FA  
Sbjct: 470 FERIRDEIRE---GRSVRAAVTHGWHRAKRTIYVADGTNLLCSLVLYFLAVGSVRGFAFT 526

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           +    ++     +    P++  +  
Sbjct: 527 LGLTTILDLVVVVMFTYPVMAILVR 551


>gi|299069840|emb|CBJ41121.1| putative Acriflavin resistance/Multidrug efflux transporter AcrB
           [Ralstonia solanacearum CMR15]
          Length = 1034

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 81/669 (12%), Positives = 194/669 (28%), Gaps = 41/669 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+ + ++   GL+        +  +  FP                     LE  
Sbjct: 9   RNPVPAVLCFILLTVFGLI-----GFHKLQVQDFPDMDLPTI---------SISASLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L +       +      I++SF   +  +    +V   + G
Sbjct: 55  APSQLENEVARKIEDKLTSLSQLDHITTKITDGAVSISVSFKLEKDPQTALSEVRNAVDG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +     +  +     +++    +   +     + S  +       +   +   
Sbjct: 115 ARASLPSEMAAPTVSKSDAANSALLTYTASSTTL--DEQDLSWFVDNDLAKALLSVKGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I  ++  + +P+ +  L  T   +S         + G    +   R S     
Sbjct: 173 KVERIGGIDREVHVDLNPALMAGLGLTAETVSSELTAMQRERSGGQGDIGGQRQSSRTLV 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +++ + +                         RR        +    A      
Sbjct: 233 GVGSAADVAALTITT--------------------GDGRRVRLDQIARVTDGAADRASYA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +     + +A+ + + T+      A    A S      +     V     +   
Sbjct: 273 FLDGKPVVGVQIT-RAKGNSDVTVLHDVRNAIATFAESHAEVRLVEASNTVTPIEDNYEG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L + V++  +  G+  LV+  ++ L++I T   + L G +L   ++  + 
Sbjct: 332 SMSMLIEGALLAIAVVWWFLRDGRATLVSAAALPLSIIPTFGAIYLAGYSLNTITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  ++ + +           +  +    +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIERHLRMGKTPYQAAMEAADEIGLAVIATTFALVAVFLPTAFMS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T  +++L+S+  A  +   M  ++++  +       P+   +L     
Sbjct: 452 GIPGLIFRQFGVTASVAVLMSLLVARLLTPMMAAYLMKATQHAE-RDGPVMTRYLRWVGG 510

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +          G+ +L SI     L T         +  + L +     ++ S   +  
Sbjct: 511 GLDKRGRTMLAAGLMLLLSIAMAAALKTGFFPAQDKSQTQVTLELTPGSTLEQSRAVALQ 570

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
               I  +                  P    + T  +      +  +           V 
Sbjct: 571 AEALIRRLPEVKGVFSTVGSASDSSNPTGGASSTADVRTSTLVVDLVARGERKSKQSAVE 630

Query: 659 PKISRELIR 667
             I  +L  
Sbjct: 631 EAIRHQLRD 639



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 71/249 (28%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     R V L  +    +                  +   + +    V     +    
Sbjct: 244 TITTGDGRRVRLDQIARVTDGAADRASYAFLDGKPVVGVQITRAKGNSDVTVLHDVRNAI 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
               E      +         I         + +  + +A+ +  W        L +   
Sbjct: 304 ATFAESHAEVRLVEASNTVTPIEDNYEGSMSMLIEGALLAIAVVWWFLRDGRATLVSAAA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I  T G   L G   N   + A+  ++G  V+D +V  + +    +      +   
Sbjct: 364 LPLSIIPTFGAIYLAGYSLNTITLLALSLVVGILVDDAIVEIENI---ERHLRMGKTPYQ 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     + T+ A     LP A   G        F +  +  ++++   +  + 
Sbjct: 421 AAMEAADEIGLAVIATTFALVAVFLPTAFMSGIPGLIFRQFGVTASVAVLMSLLVARLLT 480

Query: 817 APILLFIYD 825
             +  ++  
Sbjct: 481 PMMAAYLMK 489



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 4/158 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
              +    +   EL +   + + I    +   + + F  +      +  L L +   L  
Sbjct: 831 HQIQQGELQNMSELFQSFGLAMAIGVFCVYAVLVLLFHDFLQPATILCALPLSLGGALLS 890

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +  + F++ A+  +L L+G    + +++ +     M      +S    +  + ++   
Sbjct: 891 LLITRMSFSMPALIGLLMLMGIVTKNSILLVE--YAIMARREHGLSRLAALMDACHKRAR 948

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             V T++A    +LP    G     SF  PMA  ++  
Sbjct: 949 PIVMTTIAMGAGMLP-NALGLGAEPSFRQPMAIVVIGG 985


>gi|300694209|ref|YP_003750182.1| multidrug efflux system, subunit c [Ralstonia solanacearum PSI07]
 gi|299076246|emb|CBJ35560.1| multidrug efflux system, subunit C [Ralstonia solanacearum PSI07]
          Length = 1033

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 68/608 (11%), Positives = 164/608 (26%), Gaps = 45/608 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+            +   P                  +  L    
Sbjct: 10  RPVATALLTIGVALAGIAA-----FNLLPVSPLPQVDFPTI---------SVNASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               ++TL F  SR  +  A  V   +   
Sbjct: 56  PETMAATVATPLERSLGRIAGITEMTSQSALGSTRVTLQFDLSRDIDGAARDVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L      N          + ++    +        E           ++       Q
Sbjct: 116 RSLLPSGLPSNPTYRKVNPADAPIMI-LGLTSDTKSRGELYDAASTILAQKLSQISGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P+ L +   +   +       N +K   M               
Sbjct: 175 VNIGGASLPAVRVELNPTALNKYAISAETVRTVITATNANKPKGMLEA------------ 222

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G  +    AN   +  +    +                 +   +  + +   
Sbjct: 223 --------GDRVWTIYANDQARHAEEYKPLIIAYRNGAPVRLSDVAEVTDSVQDIRNYGS 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I + +   +   T++    +   LR          V          S    
Sbjct: 275 ANGKPSVLLIINRQPGANIIDTVDRINAILPYLRNTIPAQINLDVMMDRTPTIRASLRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV++V+++ +   +  L+   ++ +++I T  ++ L G +L   S+  + +
Sbjct: 335 ERTLMLSIGLVIMVVYLFLRNLRATLIPSVAVPVSLIGTFGVMYLCGYSLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +            +   G      T+   + + +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENVSRHIENGMRPMQAALKGAREVGFTVVSMSFSLIAVFIPLLMMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFF 532
             G   R FA+T+ ++IL+S+  +++    M   +             +  +        
Sbjct: 455 IVGRLFREFAVTLSVAILVSLAISLTTTPMMCARLLKPASEEEPGWFHRKTESFFTLLLD 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +A     +    + +     +     +      +     G +   + A++ +   
Sbjct: 515 GYRHSLAWALRHSWLTLLILLATVCLNVYLYVVVPKGFFPQQDVGRLMGFIQADQSISFQ 574

Query: 593 VVRSNLES 600
            +R+ L  
Sbjct: 575 AMRTKLVD 582



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/245 (16%), Positives = 89/245 (36%), Gaps = 10/245 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV LS V    +S+Q               L+  +    + +     +  +  
Sbjct: 246 IAYRNGAPVRLSDVAEVTDSVQDIRNYGSANGKPSVLLIINRQPGANIIDTVDRINAILP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK--GIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            +   +P     +  +      R  +R     + + I  + M++Y+++R      L    
Sbjct: 306 YLRNTIPAQINLDVMMDRTPTIRASLRDVERTLMLSIGLVIMVVYLFLR-NLRATLIPSV 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T G   L G   +  ++ A+    G+ V+D +VV + +    +     +   
Sbjct: 365 AVPVSLIGTFGVMYLCGYSLDNLSLMALTVATGFVVDDAIVVLENV---SRHIENGMRPM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
               K   E     V  S +     +P+ + GG V      FA+ ++  I+V+ + S+  
Sbjct: 422 QAALKGAREVGFTVVSMSFSLIAVFIPLLMMGGIVGRLFREFAVTLSVAILVSLAISL-T 480

Query: 816 AAPIL 820
             P++
Sbjct: 481 TTPMM 485



 Score = 45.5 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 90/233 (38%), Gaps = 6/233 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S     +  +         +     L +      + +   + ++  +  I   +T+  + 
Sbjct: 780  STFSHYEPTNTPLAVNHQGQFAASTLSFNLAPGASLSTATQQIQDAMNRIGVPTTVHGSF 839

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++ +    V ++ + I + I + + ++ +   +  ++TL       L    L 
Sbjct: 840  QGTARAFQDSLSSQPVLILFALITIYIVLGVLYESYVHPITILSTLPSAGVGALLALILT 899

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +F++ A+  V+ LIG    + +++ D   +     +  +S  D I  +        + 
Sbjct: 900  DTDFSIIALIGVILLIGIVKKNAIMMIDFALE--AERSRGMSPADAIFHACVLRFRPIMM 957

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            T+MAA +  LP+A+    G  +     I +  G++V+   +++    + L + 
Sbjct: 958  TTMAALLGALPLALGHGDGAELRQPLGISIVGGLLVSQILTLYTTPVVYLALD 1010


>gi|240140704|ref|YP_002965184.1| putative Multidrug resistance protein mexB (Multidrug-efflux
           transporter mexB) [Methylobacterium extorquens AM1]
 gi|240010681|gb|ACS41907.1| putative Multidrug resistance protein mexB (Multidrug-efflux
           transporter mexB) [Methylobacterium extorquens AM1]
          Length = 1059

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 63/540 (11%), Positives = 148/540 (27%), Gaps = 40/540 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  IG++  L        + ++P   P               + ++   
Sbjct: 8   RPILAGVISVIITVIGIVAGL-----TLPVAQYPEIAPPI-------------INVQATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                    +  +  L   +        I   S       I  +FA     +  A +V  
Sbjct: 50  PGASAQQAYESIAIPLEQEINGAPNLIYIQSTSSTDGSVSIDATFAVGSNLDAAAAEVLT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIV-LSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                 +KL    +   L         +  +            +  +     Q I  +  
Sbjct: 110 RSSRAEAKLPEAVRAQGLEIQKSSRQRLGNVVLYADPSTGFDELFLANYAETQVIKPLRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                + +    +   +    DP+R+  L  +T  +       N        G   +  +
Sbjct: 170 VTGMGRIVNFSNMRYAMRIWLDPARMEALALSTETVLQSIQAQNAQITTGSLGKLPMDRA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +  +  K  ++             +  +    +                 +      
Sbjct: 230 TPFELQLVTKGRLT-------------RPEEFGNIVLRANPDGSVVRVSDVGRVELGSEQ 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +    +       A L     P     +   +     
Sbjct: 277 YGVTSNFDGKPSATLGIFQNPDANAVEVMNGTRATMADLAERFPPGLHYSIALDSTEFVK 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      +V +V ++ +   +  L+   ++ + +I T   ++LLG +    S
Sbjct: 337 EAIYEVVRTLFEAILIVTVVTYLFLQNWRATLIPTIAVPIALIGTFGPMALLGFSFNTLS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL +GL VD  I+V E       +  +   +     +     +  + +      V 
Sbjct: 397 LLGLVLAVGLVVDDAIIVVENTERLMAEGMAPKPASREAVNEIGGPVIATTLVLAALFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G     FA+T+ +S+LIS   ++++  A+   +++             R  L
Sbjct: 457 VAFIPGLTGQLYNQFALTIAISVLISAIVSLTLTPALCGLLLKPHAKDGPRKTRWWRKPL 516



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 95/248 (38%), Gaps = 9/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +S V       +   ++          L   Q    ++V            + E  P 
Sbjct: 262 VRVSDVGRVELGSEQYGVTSNFDGKPSATLGIFQNPDANAVEVMNGTRATMADLAERFPP 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +  +   +  +E I + +  +  + + + +  ++  + W   L     + + +  T
Sbjct: 322 GLHYSIALDSTEFVKEAIYEVVRTLFEAILIVTVVTYLFLQNWRATLIPTIAVPIALIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSIN 766
            G  AL G  FN  ++  ++  +G  V+D ++V     +N  +L    ++ +    +++N
Sbjct: 382 FGPMALLGFSFNTLSLLGLVLAVGLVVDDAIIVV----ENTERLMAEGMAPKPASREAVN 437

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E  G  + T++      +P+A   G        FA+ +A  ++++A  S+ +   +   +
Sbjct: 438 EIGGPVIATTLVLAALFVPVAFIPGLTGQLYNQFALTIAISVLISAIVSLTLTPALCGLL 497

Query: 824 YDWRAKNA 831
               AK+ 
Sbjct: 498 LKPHAKDG 505



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              +   +    +  ++  +++     L  +    L I   +GF AL G+  ++     +L
Sbjct: 872  APLIFGLGVFMIFCFLAGQYESLRMPLVILLATPLAIFGAVGFLALRGMPLDVFGQIGLL 931

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G +  + +++     ++++         +    +    +   + TS A  +  +P+A
Sbjct: 932  LLVGLAAKNAILLVS-FAEDLR--RQGKDALEAAQHATRMRMRPILMTSFAFILGSVPLA 988

Query: 788  VWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  G+  G   S    +  G++VA   ++F+     +     R
Sbjct: 989  IASGAGAGARLSMGTVVIGGLLVATILTLFVTPVFYVAAERLR 1031


>gi|30249101|ref|NP_841171.1| multidrug efflux protein [Nitrosomonas europaea ATCC 19718]
 gi|30138718|emb|CAD85023.1| RND multidrug efflux transporter [Nitrosomonas europaea ATCC 19718]
          Length = 1033

 Score =  161 bits (406), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 73/616 (11%), Positives = 172/616 (27%), Gaps = 42/616 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   GLL           + ++P   P   I+                 
Sbjct: 8   RPVFAWVISLLIILAGLLSI-----RGLPVAQYPDIAPP-VIN--------VSATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +   +      +       I L+F      +  A +V   L+ V
Sbjct: 54  ARIVEESVTAIIEREMNGAPRLMYTSATSSPGSANINLTFRQGTDPDLAAVEVQNRLKMV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    ++N +      +   ++     +      IE         +  +   E   +
Sbjct: 114 EARLPEVVRRNGIFIEKSADNIQLVVSITSNDNRLTEIELGELASANILQALRRVEGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP+++  L  T + ++      N        G + + +       
Sbjct: 174 VQSF-SPEYAMRIWPDPAKMTSLDLTASDLASAIRSHNARVVIGYIGDKAVPEHAPISAN 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     ++                         +             +    +       
Sbjct: 233 VAADKALA-------------TPEDFKNITLRTKADGGAILLRDVARVEYGGSDYSFFSR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T+E        L     P     +          S    
Sbjct: 280 VNGKNAAGMAVKMAPGSNAVATVERIRNTMDELSRYFPPGVSYQIPYDTSAFVEVSIQKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+ + +   +  L+    + + ++ T A++  LG ++ + ++ G+VL
Sbjct: 340 VNTLVEAVVLVFLVMLLFMQSIRVTLIPTLVVPIALLGTFAVMYGLGFSINVLTMFGMVL 399

Query: 423 GIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E        +  S + +      +    I    +      + + FF 
Sbjct: 400 AIGIVVDDAIVVVENAERIIVEEGLSPYEATVKAMQQISGAIIGITVVLTSVFLPMAFFS 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPL 528
              G   R F++++  SI  S F A+S+  A+   +           +       +   +
Sbjct: 460 GAVGNIYRQFSLSLATSIAFSAFLALSLTPALCATLLKPVDKEHHENKRGFFGWFNRTFI 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           S        +     R   W V   I+ +  ++            + +G   + V+  + 
Sbjct: 520 SLTNRYQHRVGQILKRPVRWLVVYGIIIAAVALLFARLPTAFLPEEDQGDFMIMVMLPQG 579

Query: 589 VDLSVVRSNLESLQIG 604
             +    + L  +   
Sbjct: 580 ATMHETMNTLGEVSQY 595



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 84/215 (39%), Gaps = 9/215 (4%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAML 681
               G++ A     E +++    +  L      +  G  +   L   +      +S + + 
Sbjct: 821  TINGNAAAGKSSGEAMREIEHIVAKLPNGIGFDWSGQSLEERLSGDQAPFLFGLSVLIVF 880

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + +   ++ W      I  + L +   +    L  +  ++     ++ +IG S  + +++
Sbjct: 881  LALAALYESWLIPQAVILVVPLGVLGAVLGVTLRDMPNDIYFKVGLIAMIGLSAKNAILI 940

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSF 797
             +  ++   LY + +S  D   ++    L   + TS+A    VLP+A+  G       + 
Sbjct: 941  VEVAKE---LYDSGMSLIDATLEAARLRLRPIIMTSLAFGAGVLPLALATGAASGAQTAI 997

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               +  G V+A + +IF+  P+   +     K +R
Sbjct: 998  GTSVFGGNVMATALAIFLV-PLFFAVIGRYIKRSR 1031



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 53/142 (37%), Gaps = 9/142 (6%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + +  T       G   N+  +  ++  IG  V+D +VV +      
Sbjct: 360 SIRVTLIPTLVVPIALLGTFAVMYGLGFSINVLTMFGMVLAIGIVVDDAIVVVENA--ER 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSV-----YTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
            +    +S  +   K++ +  G  +      TS+   ++    AV  G++   F++ +A 
Sbjct: 418 IIVEEGLSPYEATVKAMQQISGAIIGITVVLTSVFLPMAFFSGAV--GNIYRQFSLSLAT 475

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            I  +A  ++ +   +   +  
Sbjct: 476 SIAFSAFLALSLTPALCATLLK 497


>gi|300310853|ref|YP_003774945.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
 gi|300073638|gb|ADJ63037.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1078

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/536 (13%), Positives = 155/536 (28%), Gaps = 38/536 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I   G++      +       +P+                    +   
Sbjct: 9   QRPIATTLLTIGIALAGIVAFRLLPVSPLPQVDYPTIS--------------ISASMPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q   +ITL F  SR  +  A  V   L  
Sbjct: 55  SPETMAATVATPLERAMGAIAGVTEMTSTSSQNSTRITLQFDLSRDIDGAARDVQAALNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L      N          + +L    +        +           ++       
Sbjct: 115 ARNLLPTGMPSNPTYRKVNPADAPILI-LAMTSDTMTQGQMYDAADSIVAQKLSQVRGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  E +P+ L +    TA +       N ++   +   +          
Sbjct: 174 QVSVGGSSQPAVRIELNPTALNKYGIGTADVRTAVAATNANRPKGLLEDQ---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN   KT      +                 +   +A V +  
Sbjct: 224 ----------DRNWQIYANDQAKTAAEYAPLIVSYRNGTPVRVQDVAEVRDSVADVRNAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I + +   +   T++    L   L+A         V          S   
Sbjct: 274 SSNGKPSVLIIINRQPGANIIDTVDNVRELLPQLQASIPSAIDMKVVLDRTPTIRASLKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +   +  L+   ++ +++I T  ++ L G +L   S+  + 
Sbjct: 334 TEFTLILSVALVIMVVFLFLRNARATLIPAVAVPVSLIGTFGVMYLAGFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I          + +  +G      T+   +I+ +   + +    
Sbjct: 394 IATGFVVDDAIVVLENISRHIESGMKPYKAALLGAREVGFTVLSMSISLIAVFIPILMME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
              G   R FAIT+ ++IL+S+  +++    M   ++R+              +L 
Sbjct: 454 GIVGRLFREFAITLSVAILVSLVVSLTTTPMMCAQLLRHDPAADEARRQRRHPWLQ 509



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 80/241 (33%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV +  V    +S+     +  +       ++  +    + +     +  +  
Sbjct: 246 VSYRNGTPVRVQDVAEVRDSVADVRNAGSSNGKPSVLIIINRQPGANIIDTVDNVRELLP 305

Query: 641 KITEIVPLSTIQNTE-IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           ++   +P +          P I   L       ++  A+ +++           L     
Sbjct: 306 QLQASIPSAIDMKVVLDRTPTIRASLKETEFTLILSVALVIMVVFLFLRNARATLIPAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T G   L G   +  ++ A+    G+ V+D +VV + +    +   + +    
Sbjct: 366 VPVSLIGTFGVMYLAGFSLDNLSLMALTIATGFVVDDAIVVLENI---SRHIESGMKPYK 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
                  E     +  S++     +P+ +  G V      FAI ++  I+V+   S+   
Sbjct: 423 AALLGAREVGFTVLSMSISLIAVFIPILMMEGIVGRLFREFAITLSVAILVSLVVSLTTT 482

Query: 817 A 817
            
Sbjct: 483 P 483



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 94/241 (39%), Gaps = 6/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +     +    S       +     L +   + V+ ++    + + + ++   + +  T 
Sbjct: 827  AAFSRFEPTTTSLSVSHEGQFVASTLSFNLAEGVSLSQATAAIDRAMAQLGVPTNVLGTF 886

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                   +       + ++ + +A+ I + I ++     +  I+TL       L    + 
Sbjct: 887  AGTANAFQSSTSSQPLLILTALLAVYIVLGILYESLIHPITIISTLPSAGVGALLALMVT 946

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G +F+L A+  V+ LIG    + +++ D            +S RD I ++        + 
Sbjct: 947  GTDFSLIALIGVILLIGIVKKNAIMMVD--FAIDAERNRGMSPRDAIFEACKLRFRPIMM 1004

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+MAA +  +P+A+    G  +     I +  G+VV+   +++    + L++    + + 
Sbjct: 1005 TTMAALLGAIPLAIGHGDGAELRQPLGISIVGGLVVSQLLTLYTTPVVYLYMERLSSWSK 1064

Query: 832  R 832
            R
Sbjct: 1065 R 1065


>gi|189912765|ref|YP_001964320.1| AcrB family efflux pump [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167777441|gb|ABZ95742.1| Efflux pump, AcrB family [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
          Length = 1060

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/576 (11%), Positives = 154/576 (26%), Gaps = 50/576 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  ++  +GL+           + +FP   P               + + +
Sbjct: 6   LQRPVLAIVISVLVVFVGLISI-----KNIPVSQFPEIAPP-------------RVTITL 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKV 115
                     +Q     L   +        +   S       I + F       +   +V
Sbjct: 48  SFPGASAQVLVQSTITTLEQAINGVAGMRYMISSSTSSGDAIIQVLFEPGTNPNDALVQV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +  +  ++    +   +     +   ++          +             + ++ 
Sbjct: 108 KTRVDQMMYRVPELVRLEGIFVQPVQPSMLLYVNLYSKDPNASEKFLYNYATVFLLPELK 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 Q                   +R    TTA++       +   +    G    + 
Sbjct: 168 RIHGIGQAKILGTRQY---------AMRAYNVTTAEVMKAIENQSIIARPGRLGQSSGKQ 218

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +   +Y +                 +  +  +    I   + G    +      +     
Sbjct: 219 AQSLEYTLT-------------YEGWFNEPGQYENIIIRAKNGGELLYLKDISKVELDSE 265

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +        +       +    IE        L+    P     +        
Sbjct: 266 FYNIYSDVDGHPAAAIMFKQTEGSNAKDVIEDIKAKLEELKQTFPPEMDYKLSYDVSNFI 325

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      T      LV IV+F+ +   +  L+   ++ +++I   + +  LG T+ L 
Sbjct: 326 DAAIEKVIHTLIEAFVLVAIVVFIFLGDWRSTLIPIIAVPVSLIGAFSFMMALGLTINLI 385

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQS----VFCSLDMGFSRAYSTIFDSNITAL 471
           ++  +VL IG+ VD  I+V E +  +  ++         ++    S A   I        
Sbjct: 386 TLFAMVLAIGIVVDDAIVVVEAVHAKMAEDHLSVYFSVKAVLGEISGAVIAITLLMTAVF 445

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF-IIRYKKMKSIDINPLSR 530
           +    L    G   R FAITM  SI++S   A+++   +    +  +   K         
Sbjct: 446 VPVTFLPGPVGVFYRQFAITMATSIVLSGLVALTLTPVLTAMILKPHSHHKKARNPIDLF 505

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
                    I   R        S         LLF 
Sbjct: 506 LEKFNFYFEIVTDRYVNLMKRFSGSKVFIVSLLLFF 541



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 103/274 (37%), Gaps = 13/274 (4%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
              +  +      + + A    +L  ++   +     +      D + +    + ++  +
Sbjct: 228 YEGWFNEPGQYENIIIRAKNGGELLYLKDISKVELDSEFYNIYSDVDGHPAAAIMFKQTE 287

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYI 684
                 V+E +K K+ E+      +    +   +S  +   I K I  +I + + + I +
Sbjct: 288 GSNAKDVIEDIKAKLEELKQTFPPEMDYKLSYDVSNFIDAAIEKVIHTLIEAFVLVAIVV 347

Query: 685 WIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +I    W   L  I  + + +     F    G+  NL  + A++  IG  V+D +VV + 
Sbjct: 348 FIFLGDWRSTLIPIIAVPVSLIGAFSFMMALGLTINLITLFAMVLAIGIVVDDAIVVVEA 407

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFA 798
           +    K+    +S    +   + E  G  +  ++   +    +P+    G V      FA
Sbjct: 408 VH--AKMAEDHLSVYFSVKAVLGEISGAVI--AITLLMTAVFVPVTFLPGPVGVFYRQFA 463

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           I MA  IV++   ++ +   +   I    + + +
Sbjct: 464 ITMATSIVLSGLVALTLTPVLTAMILKPHSHHKK 497



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 73/246 (29%), Gaps = 13/246 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V  S   +  +     +I+  N        V              + E+ K       
Sbjct: 786  EMVPYSSFMTLEQKQGANEITRYNAYTSSVINVLPSDGYTTGDVIKAIREVSKTLPKGFE 845

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                  + +              I   I+  + + + +  +++ +      I +L   I 
Sbjct: 846  VGWEGLSYDEASRGNE------AIYIFIVVIVFVYLVLSAQYESFIIPFSVIFSLPPGIF 899

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     L G+  ++ A   ++ LIG    + V++ +  R   +     +S  D   +  
Sbjct: 900  GSFFLLRLLGLANDIYAQIGMIMLIGLLGKNAVLIVEFAR---QRQEAGLSVFDAALEGA 956

Query: 766  NETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + TS A    ++P+ V  G   I   +       G++      + +   + + 
Sbjct: 957  KARFRPILMTSFAFIAGLIPLVVATGPGAIANHTIGACALGGMLFGTIFGVIVVPGLYII 1016

Query: 823  IYDWRA 828
              +   
Sbjct: 1017 FANIAK 1022


>gi|163850571|ref|YP_001638614.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium extorquens PA1]
 gi|254560190|ref|YP_003067285.1| multidrug transport protein, acriflavin resistance protein F
           [Methylobacterium extorquens DM4]
 gi|163662176|gb|ABY29543.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium extorquens PA1]
 gi|254267468|emb|CAX23309.1| multidrug transport protein, acriflavin resistance protein F (RND
           family) [Methylobacterium extorquens DM4]
          Length = 1063

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 76/555 (13%), Positives = 160/555 (28%), Gaps = 33/555 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  +I   G L  L        + ++P  +P          +           
Sbjct: 9   RPRLAVVIAIVISIAGALALL-----TIPVAQYPDIVPP---------QVSVTTTYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +     + K            +  +T SF      +  A  V   +Q 
Sbjct: 55  ADVVESTVAQPIESQVVGVDKMIYMKSVSGNDGSYTLTGSFELGTDPDINAVNVNNRVQI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +KL  D +K  +    +    + +      +     +  S  +    +D+I  +    
Sbjct: 115 ALAKLPEDVRKQGVTVKKKSSALLGVLAVYSPKSTQDPLFISNYVTINLLDRIKSTPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +       +L  L  TT  +       N        G R + D    Q 
Sbjct: 175 DATLWGPQDYAMRAWVRTDQLTGLSLTTGDVIGAIQAQNVQAPVGRIGARPISDEQQLQL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  ++                +    +                 +    A +    
Sbjct: 235 SIQTQGRLTSAE-------------QFRNIVLRTNPDGSVLRLGDVARVDLGAANLDRET 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T++        L           V          +   
Sbjct: 282 RLNGSPATVIAIYQSPGANALSTLKEVERRVGELAKTFPEGLAWKVTYDPTAFITETVHE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+IV+F+ +   +  L+   ++ +++I T  +L  +G +    S+  +V
Sbjct: 342 VQKTLVEAFVLVVIVVFLFLGSLRATLIPTLAVPVSLIGTFIVLKAVGYSANSVSLLALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     ++   S   +     +   + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEHPELSPRDATKRAMAEITAPIIAITLVLLSVFVPVAF 461

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R FA+ + +S+ IS   A+++  A+   ++R        I  +    +   
Sbjct: 462 VPGISGELFRQFAVAVAVSMFISAVNALTLSPALCGVLLRPHHGPRRGIMGMVMRSIDRV 521

Query: 537 CIAIQFMRARFWGVG 551
                   AR     
Sbjct: 522 SNGYGAAVARIVRFS 536



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 66/180 (36%), Gaps = 9/180 (5%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFA 712
                   +E   +G   +I+    +  +   + +   W   +  + ++ + I        
Sbjct: 856  EWTDTAFQEKRAEGKTAIILGFAVLFAFLFLVALYESWTIPVPVLLSVTVGIAGAYASMV 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
               +  +L A   ++ LIG +  + +++ +  ++        +  +    +         
Sbjct: 916  WGKLTLDLYAQIGMIVLIGLAAKNGILIVEFAKEQR---EKGVPLQKAATEGARLRFRPV 972

Query: 773  VYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + TS A  + +LP+ +  G+      +   P+  G++ A+   IF+  P+ +     R +
Sbjct: 973  MMTSFAFILGLLPLVIAVGASQLARRNVGTPVFGGMIAASFLGIFVIPPLYVLFQGLRER 1032



 Score = 41.6 bits (95), Expect = 0.60,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
                L     + + +  T       G   N  ++ A++  IG  V+D +VV    +R+ 
Sbjct: 363 SLRATLIPTLAVPVSLIGTFIVLKAVGYSANSVSLLALVLAIGIVVDDAIVVVENVERVM 422

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +        +S RD   +++ E     +  ++      +P+A      G +   FA+ +A
Sbjct: 423 EE----HPELSPRDATKRAMAEITAPIIAITLVLLSVFVPVAFVPGISGELFRQFAVAVA 478

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++A +++ ++  +
Sbjct: 479 VSMFISAVNALTLSPAL 495


>gi|146300983|ref|YP_001195574.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Flavobacterium johnsoniae UW101]
 gi|146155401|gb|ABQ06255.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Flavobacterium johnsoniae UW101]
          Length = 1038

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 82/676 (12%), Positives = 189/676 (27%), Gaps = 40/676 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + S+I  + +++     L Q  + +FP  +P               + +           
Sbjct: 10  ILSLIISVMIVLLGLLALFQLPITQFPDIVPP-------------SVTVTAKYTGANAEV 56

Query: 70  LQMYSD-ELRSFLKKE-GIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNS 124
                   L   +    G+   S     +    I + F      +  A  V   +  +  
Sbjct: 57  SANAVALPLERAINGVPGMTYMSTVTSNDGLTLIQVFFEVGTDPDLAAVNVQNRVTTILD 116

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +L  +  +  + T  E    ++                        + ++   +   +  
Sbjct: 117 ELPEEVIRAGVTTEKEVNSMLMYLNITSTDKTQDEQFIFNFTDINILQELKRIDGVGRAE 176

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
              +    +    DP ++     +  ++       N S      G    +  +  QY+++
Sbjct: 177 IMGQKEYSMRVWLDPQKMLSYNISANEVINSLQKQNISAAPGKVGEGSGQLDNQLQYVIK 236

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
                              +  +                     NI              
Sbjct: 237 -------------YGGKFFEPKQYEEIPLRANPDGTILRLKDISNIEFGSMSYGMVSKTD 283

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAG-SLPIKLNIVEERNVGADLGSDSIYK 363
                  +   +   + +  I +     A L+     P     +          S     
Sbjct: 284 GKPSASIMLKQRPGSNASEVIASVKEKMAELKGTSFPPGMDYNIAYDVSRFLDASIDEVL 343

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T      LV  V+F+ +   +  L+   ++ + +I +   +S++G ++ L ++  +VL 
Sbjct: 344 RTLIEAFILVAFVVFIFLQDWRSTLIPVLAVPVALIGSFTFMSMMGFSINLLTLFALVLS 403

Query: 424 IGLAVDSNILVNE----RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG+ VD+ I+V E    +I EE+ +      S     + A   I        I    L  
Sbjct: 404 IGIVVDNAIVVVEAVHVKISEEHMEPLPATISAMKEITGAVIAITIVMAAVFIPVAFLSG 463

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R F++TM +SI+IS   A+++  A+   +       K+ KS+      RF    
Sbjct: 464 PVGVFYRQFSLTMAISIVISGINALTLTPALCAIMLKAHDPSKEKKSLLDKFFHRFNKWF 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           D +  ++++        + +     +               G I         V+++  +
Sbjct: 524 DNVTSKYIKVLVKFADRTSITVGLLVLFCLFTWGTSKFLPSGFIPSEDQGMVYVNVTTPQ 583

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                     +       ++   V            T +           +     ++  
Sbjct: 584 GATVERTEKALDEVTRLAKEINGVDNVTTLAGYSIVTEIAGASYGMGMINLKDWKERDIS 643

Query: 656 IVGPKISRELIRKGIV 671
           +           +GI 
Sbjct: 644 VNEFIAKLTEKTRGIT 659



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 94/261 (36%), Gaps = 10/261 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            + K   ++ + AN    +  ++                  +      +  +       +
Sbjct: 242 FEPKQYEEIPLRANPDGTILRLKDISNIEFGSMSYGMVSKTDGKPSASIMLKQRPGSNAS 301

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRF 688
            V+  VK+K+ E+   S     +          +   I      +I + I +   ++I  
Sbjct: 302 EVIASVKEKMAELKGTSFPPGMDYNIAYDVSRFLDASIDEVLRTLIEAFILVAFVVFIFL 361

Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L  +  + + +  +  F ++ G   NL  + A++  IG  V++ +VV + +   
Sbjct: 362 QDWRSTLIPVLAVPVALIGSFTFMSMMGFSINLLTLFALVLSIGIVVDNAIVVVEAVH-- 419

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           +K+    +        ++ E  G  +  ++      +P+A   G V      F++ MA  
Sbjct: 420 VKISEEHMEPLPATISAMKEITGAVIAITIVMAAVFIPVAFLSGPVGVFYRQFSLTMAIS 479

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           IV++  +++ +   +   +  
Sbjct: 480 IVISGINALTLTPALCAIMLK 500



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I +   + +Y+ +             + +L + +  +     + G++ N+ A  A++ LI
Sbjct: 876  IFALCILFVYLLLAAQYESLLLPFPVLLSLPVGVFGSYLALLMVGLDNNIYAQVALVMLI 935

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ +     M          +   +         + TS A    ++P+ +  
Sbjct: 936  GLLAKNAILIVEFA---MAQNKLGRDITEAAIEGARLRFRPILMTSFAFISGLIPLCIAT 992

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G     S     A G+++     + I   + +          +
Sbjct: 993  GAGAVGNRSIGTAAAGGMLIGTVFGLVIIPGLYILFAKLEKAMNK 1037


>gi|16125455|ref|NP_420019.1| AcrB/AcrD/AcrF family protein [Caulobacter crescentus CB15]
 gi|221234199|ref|YP_002516635.1| AcrB family cation/multidrug efflux pump protein [Caulobacter
           crescentus NA1000]
 gi|13422529|gb|AAK23187.1| AcrB/AcrD/AcrF family protein [Caulobacter crescentus CB15]
 gi|220963371|gb|ACL94727.1| cation/multidrug efflux pump, AcrB family [Caulobacter crescentus
           NA1000]
          Length = 1047

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 61/521 (11%), Positives = 150/521 (28%), Gaps = 37/521 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   ++C IGL            +   PS  P                     
Sbjct: 8   RRPVFAAVAAIILCVIGLAA-----YTSLPIRELPSVDPPVV---------SVSTSYRGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + ++       S R  ++ I+++F   R  +  A+ V   +  
Sbjct: 54  SAEVIEERITQVIERQVAGIQGIDRVNSSSRDGRSNISITFNLDRDLDAAANDVRDAVSR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L        +         I++       +  + ++ +    R  ++++   +   
Sbjct: 114 VTSNLPDQADPPQIAKANADAAPIIILNLTSTTL--NPLQLADYADRYLVERMSTVDGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       +  +    D + +     T   +       N               +     
Sbjct: 172 QANLFGAKIYAMRIWLDANEMAARGVTVDDVESALNAQNLELPAGSLESAAKDFTIRV-- 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                             ++        + +                 I +         
Sbjct: 230 ----------------ARSYATPEEFARLPLRAANSSGYVLRLGDVARIEEGPDERRRLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + ++Q +     +        +     P    ++   N      +   
Sbjct: 274 RGNGIDQVGIGLTRQSQANDVAISKAVRAEVEAINQTLPPGTKMVIAVDNSVFTAEAIHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +  GLV++V  + +   +  L+      + ++ T  +L+ LG +L L ++  +V
Sbjct: 334 VWITMGLAIGLVVMVNLLFLGSWRSALIPSIVAPICILSTFIILAPLGFSLNLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E I+      +    + + G  + +  +  + +  +     L F  
Sbjct: 394 LAVGLVVDDAIVVVENIQRRVDDGEPPLVAAERGTRQVFFAVVATTVVLVSVFAPLMFLP 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           G   R     A+ +  ++  S   A+S+   M   ++R   
Sbjct: 454 GYIGRLFVELAVAIAAAVAFSALLALSLSPMMASKLLRPAH 494



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 78/217 (35%), Gaps = 9/217 (4%)

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             +R             V + V     +         +   G +    L   G + +    
Sbjct: 808  RLRSVTLTAQLNPGYTVEDAVAFFKDQAAQHPAPGVSVKWGGQAKDYLEGSGGIAIAFGL 867

Query: 678  IAMLIYIWIRFKWYFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSV 734
              +L+++ +  ++   +  A+  L + +    G F L   G   N  +   ++ LIG + 
Sbjct: 868  ALLLVFLVLAAQFESWIHPAVIMLTVPLAALGGLFGLLMTGSTINTYSQIGLIILIGIAT 927

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
             + +++ +      +L    +S R+ + ++    L   + TS++A +  LP+ +W   G 
Sbjct: 928  KNGILIVEFAN---QLRDEGLSVREAVIEAAALRLRPIIMTSVSAAMGALPLMLWAGAGA 984

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                +    +  G + A   ++FI       +  +  
Sbjct: 985  GSRQTIGAVIFTGAIFATLLTLFIVPVFYDLLARFTK 1021


>gi|319795276|ref|YP_004156916.1| acriflavin resistance protein [Variovorax paradoxus EPS]
 gi|315597739|gb|ADU38805.1| acriflavin resistance protein [Variovorax paradoxus EPS]
          Length = 1058

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/527 (11%), Positives = 144/527 (27%), Gaps = 21/527 (3%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
             P   +   P                     L     + +   +    +   S +    
Sbjct: 28  VFPLLPVAPLPQVDFPTIQ---------VSANLPGASPETMASNVAQPLERQFSLIAGLS 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +      +ITL F   R  +  A  V   +     +L  +              S 
Sbjct: 79  QMTSTSGLGSTQITLQFDLDRNIDAAALDVQAAITASTGQLPANLPSPPSFRKVNPADSP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +L   ++        E +         QI                  +  + DP++L  L
Sbjct: 139 ILI-LSVQSKTLPLTEVNDYADNILAQQISQIAGVGLVNIGGAQKPAVRVQLDPAKLAAL 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +         +             +      +                      
Sbjct: 198 GLSLEDVRTVLSSATVNAPKGTIDGPNQSFTVYTNDQLLKA--------QPWNDVILAYR 249

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           +   + +    +                 A   +G  +          + +   +   T+
Sbjct: 250 NGAPIRVRDLGVAIDGPENAKIAGWAYAGAAAPEGNTIQNGRSIVLAITKQPGANVIETV 309

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        L+A   P                S    + T  +   LV+ V+F+ +    
Sbjct: 310 DRINAAMPRLKASIPPTVEVNALVDRTQTIRASVLDVEFTLLLTIALVVAVIFVFLRNVP 369

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ L ++ T+A++ LLG +L   S+  + + +G  VD  I++ E I     + 
Sbjct: 370 ATLIPSVTVPLALLGTVAVMYLLGYSLDNLSLMALTIAVGFVVDDAIVMLENIYRYVEEG 429

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
            S   +   G      TI   +++ +   + L   G   G   R FA+T+ L+I++S+  
Sbjct: 430 MSPLEAAYKGAGEIGFTIISISVSLIAVFIPLLLMGGIVGRLFREFAVTVTLTIVVSVVI 489

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           ++++   +    ++ +  +      L         +           
Sbjct: 490 SLTLTPMLCSRFLKNEHARKHGRLYLLFERGFDAMLNGYKRGLHVVL 536



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 67/168 (39%), Gaps = 13/168 (7%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + ++++ I + +           L    T+ L +  T+    L G   +  ++ A+   +
Sbjct: 354 IALVVAVIFVFL-----RNVPATLIPSVTVPLALLGTVAVMYLLGYSLDNLSLMALTIAV 408

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +     +S  +   K   E     +  S++     +P+ + G
Sbjct: 409 GFVVDDAIVMLENI---YRYVEEGMSPLEAAYKGAGEIGFTIISISVSLIAVFIPLLLMG 465

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI--YDWRAKNARI 833
           G V      FA+ +   IVV+   S+ +   +       +   K+ R+
Sbjct: 466 GIVGRLFREFAVTVTLTIVVSVVISLTLTPMLCSRFLKNEHARKHGRL 513



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +      A    +  + K   E+    ++        +  ++ +      +
Sbjct: 813  GQFPAVTISFNLAPGHALGDAVNAINKAQAEMGIPQSLSGAFQGTAQAFQDSLSSQPYLI 872

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + +A+ I + + ++ +   L  ++TL       L      G + ++ A+  ++ LIG 
Sbjct: 873  AAALVAVYIVLGLLYESYIHPLTILSTLPSAGVGALLILMAGGYDLSVIALIGIILLIGI 932

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D            +  ++ I ++        + T+M A +S LP+ +    
Sbjct: 933  VKKNGIMMID--FALKAEREQGMEPKEAIYQACLLRFRPIMMTTMCALLSGLPLMLGHGS 990

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD-----WRAKNAR 832
            G  +       M  G++++ + ++F    + L++        R K AR
Sbjct: 991  GSELRRPLGYAMVGGLILSQALTLFTTPVVYLYLDRAHFWYLRRKEAR 1038


>gi|311739554|ref|ZP_07713389.1| protein-export membrane protein SecD [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305370|gb|EFQ81438.1| protein-export membrane protein SecD [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 638

 Score =  161 bits (406), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 114/580 (19%), Positives = 221/580 (38%), Gaps = 65/580 (11%)

Query: 1   MRNNP--W-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           M+N+   W    +   +  + ++ AL            P         LG+DL+GG+ + 
Sbjct: 9   MKNSKRQWPKRAIALFVLIVVVIYAL--IFLTGSRQSTP--------KLGIDLQGGTRVT 58

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR--FKENIADKV 115
           L    ++     L+   + L   +   G+    +    N + ++         + +    
Sbjct: 59  LAPQGEEPTQDQLKQARNILEQRVNGMGVSGSEVVINGNTLVITVPGEDASQAQAVGQTS 118

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
            LF + V      D +K L     +     V       +  +  +EQ  + I Q+  Q+ 
Sbjct: 119 QLFFRPVAKPSMPDMEK-LNKELEDMANRWVKYDVLSAEEANKQMEQMTKAIAQQEAQMT 177

Query: 176 ISESTIQR----------LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK--------- 216
             E   Q+            S+ I      ++    L +   +    +            
Sbjct: 178 GKEPKKQKAPKVSAKPLEEPSNSIEQTKRRDEVTEMLLKDRQSEDPTTQAAASALMTCQG 237

Query: 217 -VLPNNSKKGFMFGVRFLRDSDGNQYLV-----------EDKVEISGIHLNGATA----- 259
              P                S GN Y++           E+   ++G  ++  +      
Sbjct: 238 STDPLAGADDPAKPFVTCDYSKGNPYVLEPAPLLNGIKDENGTRLTGNEIDTNSPIEGGL 297

Query: 260 --NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGK 316
                               G++ + ++T++++   +A+ LD  V++APVI  A      
Sbjct: 298 NGQSGQMEINFSFKTGDGPNGSQTWADLTQEHLKDQVAITLDSGVISAPVIQGATPVGSA 357

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKL------NIVEERNVGADLGSDSIYKGTCAIVA 370
             I+G+F+ E A  LA  L+ G+LP+              ++   LG  ++  G  A + 
Sbjct: 358 TSITGDFSQEEAQNLANNLKYGALPLSFAGENGEPGGTVESIPPTLGKAALQAGLIAGLV 417

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGL 426
           GLVL++ + +  +     V+   +  + +LT   L LL    G +L L  IAG+V+G+G 
Sbjct: 418 GLVLVMAYSLYYFRALAGVSLIFLIASGVLTYGSLVLLGRWIGYSLDLSGIAGLVIGVGA 477

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
             DS ++  ERI++E  + ++   +    + RA +TI   N   LI +VV++F   G V+
Sbjct: 478 TADSFVVYYERIKDELLEGRTFRSATQKAWERARATIVTGNAVTLIGSVVVYFLAIGEVK 537

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           GFA TMGL+ +  +  +  ++  +M  + R        +N
Sbjct: 538 GFAFTMGLTTVFDLVVSFLVMAPLMQMVGRRPAAAKPSMN 577



 Score =  114 bits (284), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 78/267 (29%), Gaps = 8/267 (2%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +                  +      D   +  +   +    I      G    +     
Sbjct: 306 INFSFKTGDGPNGSQTWADLTQEHLKDQVAITLDSGVISAPVIQGATPVGSATSITGDFS 365

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
           Q         +                    E + P + +  ++ G++  ++  + ++ Y
Sbjct: 366 QEEAQNLANNLKYGALPLSFAGENGEPGGTVESIPPTLGKAALQAGLIAGLVGLVLVMAY 425

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAVAAVLTLIGYSVNDKVV 739
               F+    +  I  LI     T G   L     G   +L+ +A ++  +G + +  VV
Sbjct: 426 SLYYFRALAGVSLIF-LIASGVLTYGSLVLLGRWIGYSLDLSGIAGLVIGVGATADSFVV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
            Y+R++  +       +FR    K+        V  +    I  + +       +  FA 
Sbjct: 485 YYERIKDELLE---GRTFRSATQKAWERARATIVTGNAVTLIGSVVVYFLAIGEVKGFAF 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDW 826
            M    V     S  + AP++  +   
Sbjct: 542 TMGLTTVFDLVVSFLVMAPLMQMVGRR 568


>gi|311104641|ref|YP_003977494.1| AcrB/AcrD/AcrF family protein 3 [Achromobacter xylosoxidans A8]
 gi|310759330|gb|ADP14779.1| AcrB/AcrD/AcrF family protein 3 [Achromobacter xylosoxidans A8]
          Length = 1034

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 75/668 (11%), Positives = 192/668 (28%), Gaps = 44/668 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  +G+       L    + ++P                         
Sbjct: 9   RRPVLALVVSTLILLLGI-----KALSGLPVRQYPLTESTTIT---------ITTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     +  + ++       S  Q ++ IT+    +        +V   +  
Sbjct: 55  SPDLMQGFVTQPIAQSVATVEGIDYLSSSSTQGRSVITVRMKLNADSNKAMTEVMAKVNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D    +LV +  +  ++     +   +   A   +  + R    Q+   +   
Sbjct: 115 VKYRLPQDVYDPVLVKSAGEATAVAYVGFSSSTLSLAA--LTDYLSRVVQPQLSSIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    DP+R+     +  +++      N           ++  +     
Sbjct: 173 SVELYGGQKLAMRVWLDPNRMAARGISAGELADALRDNNVQAAPGQAKGLYVVSNIQVNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +  E                      D+     G           +    A      
Sbjct: 233 DLVNVAEF--------------------RDMVVKREGDAIVRLGDVATVELGAASTDSSG 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    ++    L   ++    P     V          S   
Sbjct: 273 LMDGEPAVYFGLNATPVGNPLVIVKRLNELLPNIKQNLPPGTSVQVPFELARFISASIDG 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   +I L+++   A+++L G ++ L ++  +V
Sbjct: 333 VVQTLIEAIAIVVVVIFLCLGSLRAVLIPVLTIPLSMLGGAAIMALFGFSVNLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     + +S   +  +G       +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVHRHIEEGKSPVRAALIGAREVAGPVIAMTITLAAVYAPIGLMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPLSRFFL 533
              G   + FA T+  S+++S   A+++   M  F++  +       +  +         
Sbjct: 453 GLTGSLFKEFAFTLAGSVVVSGVIALTLSPVMSSFLLNSRVSEGWMARRAEHFFEGLGNA 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               + +        G+    + +               ++ +  +   + + +  ++  
Sbjct: 513 YGRVLDVSLHHRWVTGLIAVAVLASLPFLYNAAQSELAPVEDQSTVLTAIKSPQHANIDY 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V            +     G                      E   +   +I        
Sbjct: 573 VEKFGRKWDDVMKTLPEQQGRWLINGSDGVSNSIGGVDFVSWEKRHRSADQIQADMQAMA 632

Query: 654 TEIVGPKI 661
            ++ G  I
Sbjct: 633 NQVEGSNI 640



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 86/248 (34%), Gaps = 11/248 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       + +  ++ +S  + D     + G     V              +L  +K+ +
Sbjct: 253 VRLGDVATVELGAASTDSSGLMDGEPAVYFGLNATPVGNPLVIVKR--LNELLPNIKQNL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                +                +++  I  + I  + + + +         L  + T+ L
Sbjct: 311 PPGTSVQVPFELARFISASIDGVVQTLIEAIAIVVVVIFLCLG---SLRAVLIPVLTIPL 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +       ALFG   NL  + A++  IG  V+D +VV + +    +      S      
Sbjct: 368 SMLGGAAIMALFGFSVNLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGKSPVRAAL 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               E  G  +  ++       P+ + G   GS+   FA  +A  +VV+   ++ ++  +
Sbjct: 425 IGAREVAGPVIAMTITLAAVYAPIGLMGGLTGSLFKEFAFTLAGSVVVSGVIALTLSPVM 484

Query: 820 LLFIYDWR 827
             F+ + R
Sbjct: 485 SSFLLNSR 492



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 83/250 (33%), Gaps = 10/250 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +  V +     + +      S+ +       F+       +    PG ++         +
Sbjct: 762  RYYVKSASGAQVPLSNLVTVSMGVEPNKLTQFNQLNAATFQAIPMPGVTMGDAVQFLTEQ 821

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
             K          Q+      +    L    ++  I + I + + +  +++        + 
Sbjct: 822  AKFLPAGFSYDWQSDARQYSQEGSAL----MITFIFAIIVIYLVLAAQYESLRDPFIILV 877

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            ++ + I   L   AL     N+     ++TLIG      +++ +   +     +  +  R
Sbjct: 878  SVPMSICGALIPLALGMATVNIYTQIGLVTLIGLISKHGILMVEFANE--MQLSHGLDRR 935

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
              ++++    L   + T+ A  + ++P+      G     S  + +  G++V    ++F+
Sbjct: 936  AAMEQAARIRLRPILMTTAAMVMGLIPLLFATGAGAHSRYSLGLVIVVGLLVGTLFTLFV 995

Query: 816  AAPILLFIYD 825
               +      
Sbjct: 996  LPTVYTVFAR 1005


>gi|269968779|ref|ZP_06182769.1| multidrug resistance protein, putative [Vibrio alginolyticus 40B]
 gi|269826624|gb|EEZ80968.1| multidrug resistance protein, putative [Vibrio alginolyticus 40B]
          Length = 1037

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 62/651 (9%), Positives = 177/651 (27%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVAALVLSMLLCVFGFVS-----FTKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGVDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +    R  +D+  +     
Sbjct: 115 AQRSLPDEADDPIVYKNNGSGEASLYINLSSAE--MDRTQLTDYAERVLMDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SIDLSGGLYKVMYVKLKPELMAGRSVTASDITSALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +          +     ++           
Sbjct: 219 -----VRNDSTVMSVRTARTYNTPEDFQYLVIKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++         S   
Sbjct: 274 KSDGVVNISLGVVPQSDANPLEVAKLVRSEVDNIQKFLPEGTRLAIDYDATVFIERSIEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   I++     +     + R F   +  
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNRFNEAVDRLFSKLESG 513

Query: 539 AIQFMR--ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               ++   +       ++ +         + +   +  +    +     R  D +    
Sbjct: 514 YRALLKGALKVRWAAPLVILACLGGSYFLMNQVPAQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MSANMDIVEDRLMPLLGQGYLKSFSIQTPAFGGQAGDQTGFVIMILEDWNE 624



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L +          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARTYNTPEDFQYLVIKRASDNTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L   P        V ++V+ ++  I           +    +  + R        +
Sbjct: 279 VNISLGVVPQSDANPLEVAKLVRSEVDNIQKFLPEGTRLAIDYDATVFIERSIEEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNR 498



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        + G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMFTVPMGVFGGFLGLVIMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    + F   I  +    L   + T+       +P+ V    G     +    + FG+
Sbjct: 931  QLRDRGVGFEKAIIDAAARRLRPILMTAFTTLAGAIPLIVSTGAGYESRIAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
              A   ++F+   +   I     
Sbjct: 991  GFATLVTLFVIPAMYRLISAKTQ 1013


>gi|317048815|ref|YP_004116463.1| acriflavin resistance protein [Pantoea sp. At-9b]
 gi|316950432|gb|ADU69907.1| acriflavin resistance protein [Pantoea sp. At-9b]
          Length = 1040

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 72/679 (10%), Positives = 182/679 (26%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGIL-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLSLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTTTSMPLTQVQDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  T+  +       N +                    
Sbjct: 184 VTLSGGQRPAVRVQMNAQALAALGLTSETVRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN    + +    +                 I +       G  
Sbjct: 236 ------------ITLSANDQMTSAEDYRQLIISYNNGAPVRLGDVATIEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    L   L A         +          S +  
Sbjct: 284 ANRQPAIVLNVQRQPGANIIATADNIRALLPSLTATLPKSVEVKMLTDRTTNIRASVADT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++++++ +      ++   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 344 QHELMLAIGLVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYLEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   +       K+ +    +      ++ 
Sbjct: 464 VIGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSAESLRKQNRFSRASEAMFDRVVA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL---GVLANRPVDLS 592
                     +   + +S+      + +L    +  G   +    +    + A + V  +
Sbjct: 524 GYGRWLTRVLQHPWLTLSVALGTLLLTVLLWIVIPKGFFPQQDNGIIQGTLQAPQSVSYA 583

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +      +    +         +F+         + A+ ++      +  + +P    +
Sbjct: 584 SMAQRTRDVASIIMKDPAVQSLTSFVGVDGTNAALNSARLQINLKPLAERDDRIPAVQKR 643

Query: 653 NTEIVGPKISRELIRKGIV 671
             + V       L  + + 
Sbjct: 644 LQDAVASVPGVSLWLQAVQ 662



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 347 LMLAIGLVVMIIYLFLR-NVPATIIPAVAVPLSLVGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYLEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DVIGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 37.7 bits (85), Expect = 7.6,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 91/254 (35%), Gaps = 6/254 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +        SV  S +  ++    +      ++       +   D  +    ++ V    
Sbjct: 780  IRLTSTDGGSVPLSAIAKVEERHAALSINHLDQFPSATFSFNVADGYSLGDAVKAVSAAE 839

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             ++   + +              +   +  +I + +AM I + + ++ +   +  ++TL 
Sbjct: 840  DQVGMPAEMMTQFQGSTLAFEAALTSTVWLIIAAVVAMYIVLGVLYESFIHPVTILSTLP 899

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    + G E ++ ++  ++ LIG    + +++ D            ++ R+ I
Sbjct: 900  TAGVGALLALMISGNELDIVSIIGIILLIGIVKKNAIMMID--FALAAEREQGMAPREAI 957

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++        + T++AA +  LP+ +    G  +     I MA G++++   ++F    
Sbjct: 958  YQACLLRFRPILMTTLAALLGALPLMLSTGAGAELRRPLGIAMAGGLILSQILTLFTTPV 1017

Query: 819  ILLFIYDWRAKNAR 832
            I L          R
Sbjct: 1018 IYLLFDRLAQITRR 1031


>gi|265767591|ref|ZP_06095257.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263252896|gb|EEZ24408.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 1052

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/528 (12%), Positives = 158/528 (29%), Gaps = 40/528 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEYGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP +L     T   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPGKLEAYNLTIETISSIIGAENKNIPGGNFDIGNETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  ++  + +                            +      +   +       
Sbjct: 232 EFDDSRQLEDVVVGSY--------------------NGANVYLRDVARVVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVKGAMIVVQKQSGANSVDISKKVAEALPKLQKNLPSDVKLGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LAETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAVTGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           G +    +     M   + IS   A+S+   +   ++R +K +S    
Sbjct: 452 GMSGVMFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKQSKTFK 499



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 92/249 (36%), Gaps = 7/249 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V   +++++       N   +   +V  +    +SV  ++ +     K+ + +P
Sbjct: 251 NVYLRDVARVVDTVEERAQETYNNGVKGAMIVVQKQSGANSVDISKKVAEALPKLQKNLP 310

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                   +         I      V+ + + ++I +++   +W   L    T+ L +  
Sbjct: 311 SDVKLGVIVDTSDNILNTIDSLAETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIA 370

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           +  + A+ G   N+ +++++   IG  V+D +VV + +             +       N
Sbjct: 371 SFIYLAVTGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTN 427

Query: 767 ETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++       P+  V G  G +       M   + ++  +++ +   +   +
Sbjct: 428 EVAISVIASTLTMIAVFFPLTMVSGMSGVMFKQLGWMMCAIMFISTVAALSLTPMLCSQL 487

Query: 824 YDWRAKNAR 832
              + K ++
Sbjct: 488 LRLQKKQSK 496



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 76/241 (31%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L  +            ++  +V +            V           +P        
Sbjct: 793  KELGKVVERFAPPTIERKDRERIVTVSAVISGEALGNVVNAGNAIIDKMDIPSDVTIQVA 852

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + ++I  + + I +  +F+   +    + +L    +  L      
Sbjct: 853  GSYEDQQDSFRDLGTLAILI-VVLVFIVMAAQFESLTYPFIIMFSLPFAFSGVLMALFFT 911

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                ++ ++   + LIG  V + +V+ D +          ++  + +  +    L   + 
Sbjct: 912  KSTLSVMSLLGAIMLIGIVVKNGIVLIDYI---TLCRERGLAVLNSVVTAGKSRLRPVLM 968

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+    + ++PMA+ GG    +    AI +  G+ V+   ++ +   +         K+ 
Sbjct: 969  TTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTVSTILTLVLIPTLYCVFAGTGIKHQ 1028

Query: 832  R 832
            R
Sbjct: 1029 R 1029


>gi|256839805|ref|ZP_05545314.1| multidrug resistance protein [Parabacteroides sp. D13]
 gi|256738735|gb|EEU52060.1| multidrug resistance protein [Parabacteroides sp. D13]
          Length = 1067

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 68/694 (9%), Positives = 175/694 (25%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIMVAGII-----GLFTLPVEQYPDIAPPTVM---------VSTTYFGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +        IT+ F      +  A  V   +  
Sbjct: 55  AETMQKSVVAPLEEAINGVEDMTYMTSTATNSGTATITIYFQQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +               S  I      +I       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSMLQIFSLYSPDGSYDENFLSNYISINLKPEILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +     P  + Q     + ++      N        G            
Sbjct: 175 ELMVMG-GDYSMRIWMKPDVMAQYKLIPSDVTSVLAEQNIESATGSLGENSDETYQ---- 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            +       +    +                +I           
Sbjct: 230 ------------YTMKYSGRLLTPEEFGDIVIRSTEDGEVLKLKEIADIELGKESYAYIG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +                         +           S   
Sbjct: 278 QTNGKPGISCMVFQTAGSNATEVNNKIDAFLEEASKDFPKGIEVVKLMSTNDFLYASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   +I +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDIRSTLIPLVAIVVSLIGTFAFMTVAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSN---ITALIATVVL 477
           L IG  VD  I+V E ++        S + +         S I  ++   +   I    +
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASMDAMKGLTSAIVSTSLVFMGVFIPVSFM 457

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
               G     F +TM  ++ IS   A+++  A+   +                 + +   
Sbjct: 458 SGTSGTFYTQFGLTMAEAVGISTINALTLSPALCAILLKPYINEDGTQKNNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                          + F++ R+    +     +  I L+ T   +   D   G     +
Sbjct: 518 NAAFDSMIAKYKHGVLFFIKRRWLAWSLLACSIVLLIVLMNTTKSSLVPDEDQGTVFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +          + + +     I+        + +       G   +    +  +K     
Sbjct: 578 STASGSSLATTNKIMTNIEQRINQIPQLQSYSKVSGYGLLAGQGSSFGMFILKLKHWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    I  +  + I
Sbjct: 638 PDKEDNVQAVIGQVYGRTADIKDATIFAIAPAMI 671



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 50/461 (10%), Positives = 143/461 (31%), Gaps = 14/461 (3%)

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
            V++         +    +  +     I  +  ++ + +T T    A I +      D +
Sbjct: 43  TVMVSTTYFGANAETMQKSVVAPLEEAINGVEDMTYMTSTATNSGTATITIYFQQGTDPD 102

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +         ++    +   +                T+++    L+   G     F   
Sbjct: 103 MAAVNVQNRVSKATGQLPAEVTQVGVTTSKRQ-----TSMLQIFSLYSPDGSYDENFLSN 157

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
                L      IS V  +M+    Y     +  + ++++ LIP  +             
Sbjct: 158 YISINLKPEILRISGVGELMVMGGDYSMRIWMKPDVMAQYKLIPSDVTSVLAEQNIESAT 217

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            S+  +               +  +    + + +    ++  ++   +     +      
Sbjct: 218 GSLGENSDETYQYTMKYSGRLLTPEEFGDIVIRSTEDGEVLKLKEIADIELGKESYAYIG 277

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRK 668
                  +            T V   +   + E           +     +  L   I +
Sbjct: 278 QTNGKPGISCMVFQTAGSNATEVNNKIDAFLEEASKDFPKGIEVVKLMSTNDFLYASIHE 337

Query: 669 GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +  +I + I +++ +++        L  +  +++ +  T  F  + G   NL  + A++
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDIRSTLIPLVAIVVSLIGTFAFMTVAGFSINLITLFALV 397

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            +IG  V+D +VV + ++    +   S     +   ++       V TS+      +P++
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASM--DAMKGLTSAIVSTSLVFMGVFIPVS 455

Query: 788 VWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G+       F + MA  + ++  +++ ++  +   +  
Sbjct: 456 FMSGTSGTFYTQFGLTMAEAVGISTINALTLSPALCAILLK 496



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/410 (9%), Positives = 108/410 (26%), Gaps = 27/410 (6%)

Query: 440  EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
            +   +      ++     + Y    D     + A       G G      +         
Sbjct: 632  KHWDERPDKEDNVQAVIGQVYGRTADIKDATIFAIAPAMIPGYGMGNALEMHTQDKAGGD 691

Query: 500  MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
            + T  +  +  +  +    ++ +       ++      +     +         +     
Sbjct: 692  LTTFFNTTQQYLAALRERPEIATAYSTFDIKYPQWRVDVDAAKCKRAGITPDAVLSTLSG 751

Query: 560  SICLLFTHGLNY-----------------GIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                 +   +N                           + +       LS   +  +   
Sbjct: 752  YYGGQYVSNINRFSKVYKVMIQSDPKYRLDEASLNNTFVRMSNGEMAPLSQFITLTKVYG 811

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
               ++  N                   A   V E     + +         T     + +
Sbjct: 812  AESLARFNMYNSIAVNAVPANGYSSGDAIKAVKETAATSLPKGYGYDFGSITREENQQSN 871

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
              +I  GI  ++I  I   +Y      +      I ++ + +  +  F    G+E N+  
Sbjct: 872  TTIIIFGICILMIYLILSALY----ESFLVPFAVILSVPMGLMGSFLFAKFMGLENNIYL 927

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ LIG      +++ +      +   + +S       +    L   + T++     
Sbjct: 928  QTGLIMLIGLLAKTAILLTE---YATQRRLSGMSLTSAALSAAKVRLRPILMTALTMIFG 984

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +LP+ V    G +   S       G+++   + +FI   + +     + K
Sbjct: 985  LLPLIVSNGVGANGNRSLGTGAVGGMLIGTLALLFIVPCLFITFQYLQEK 1034


>gi|42522687|ref|NP_968067.1| acriflavin resistance protein [Bdellovibrio bacteriovorus HD100]
 gi|39573883|emb|CAE79060.1| acriflavin resistance protein [Bdellovibrio bacteriovorus HD100]
          Length = 1033

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/617 (11%), Positives = 163/617 (26%), Gaps = 39/617 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L   +   G +      + +  + + P                   +  E  
Sbjct: 20  RRPVFAWVLMFALIVFGAI-----CMNRMGISQLPDVDFPIV---------SVSVDYEGA 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   L    +E    ++       S RQ    +TL F  +R  + +  +V   L  
Sbjct: 66  APEVVEAELLDPIEERLLAIEGIKEMRSSARQGSGSVTLEFDINRNVDVVLQEVQTALSR 125

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +            +     +E  I++     +  +   I          +DQ+   E   
Sbjct: 126 MRW--PPGVDPATIRKQNPEEDPIIILSVYGEAPLKEMI---NWTENYLLDQVRFLEGVG 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP +L  L  T   +       +       F             
Sbjct: 181 EVSIGGFSQRNLRIWVDPKKLSALYLTLTDVVDAISSQHLESAAGQFTEGERELRVRWLG 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  +++ I +           +  +                    +   L+ +    
Sbjct: 241 EATNVEDVANIQILRRGGQRIHDRNIFIR---------------DVARVEDGLSDIRRVA 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        I   +   +              ++          V          + ++
Sbjct: 286 RVDGRQAVSIIVRKQRGTNEVTVANEVREKLTSIKDNFPKGFNFRVNVDFTRPTDATVNL 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + A + ++V F+ +      +   FSI  +++ T  +L   G TL L ++  + 
Sbjct: 346 TIEKLWVAALITILVCFLFLGSISAAVNILFSIPTSIVGTFVILYFSGFTLNLFTLLALT 405

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L I + VD  I++ E I    R  +    +   G          + +  +   + + F  
Sbjct: 406 LSISIVVDDAIMLLENIVRHYRMGKPSAKAASDGSKEVLPAAIAATLAVIAVFLPVVFMD 465

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIPD 536
           G   +    F +TM  ++ +S+  A++I       +     K  K               
Sbjct: 466 GIIGKFFFQFGVTMSAAVSLSLLEAVTITPMRAAALLSSEPKVSKLEHWLDELFEKFAHS 525

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I     RF  V +        + L     +             ++  +    + +  
Sbjct: 526 YQKILHGTLRFKYVVVIGSLVFFVVSLFLVAKVRQEFVPAQDQDFIIINAQMPPGTSLEK 585

Query: 597 NLESLQIGDISFQNFDG 613
                +  +   +    
Sbjct: 586 TSREAEKIEAILKQDAS 602



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 86/242 (35%), Gaps = 7/242 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L  ++            +   + +        +Q +VL+       EI+P       E
Sbjct: 793  SQLVKIEEQSAIQGISRVNRQRAISVFGNLAPGQSQAKVLDRTSAIAKEILPTGYSFALE 852

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                  +    +     +++  +   + + I+F  +   +  +  L   +T  L    +F
Sbjct: 853  GASAGFADS-FKSLYSAMLVGILVAYLILAIQFNSFIHPVSVLVALPFSVTGALVALWMF 911

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             +  NL +   ++ L+G +  + +++ +    N   Y         + ++    L   + 
Sbjct: 912  DVSLNLFSFIGLIVLMGIAKKNSILLVE--FTNQVRYHGEKDISKALLQACPIRLRPILM 969

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS+A   + +P+ +    G        + +  G +V+   ++F+   + L +    +K  
Sbjct: 970  TSVATVAAAMPLVIGHGIGSETRVPMGLSIIGGTIVSTLLTLFVVPALYLMLSPLESKKK 1029

Query: 832  RI 833
             +
Sbjct: 1030 EV 1031



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 81/267 (30%), Gaps = 8/267 (2%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  I  +GG ++        D++ V   L  ++                 +         
Sbjct: 250 NIQILRRGGQRIHDRNIFIRDVARVEDGLSDIRRVARVDGRQAVSIIVRKQRGTNEVTVA 309

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            + R      K          +          +  L  + +   + + I +L+       
Sbjct: 310 NEVREKLTSIKDNFPKGFNFRVNVDFTRPTDATVNLTIEKLW--VAALITILVCFLFLGS 367

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
              A+  + ++   I  T       G   NL  + A+   I   V+D +++ + +   ++
Sbjct: 368 ISAAVNILFSIPTSIVGTFVILYFSGFTLNLFTLLALTLSISIVVDDAIMLLENI---VR 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
            Y               E L  ++  ++A     LP+    G +      F + M+  + 
Sbjct: 425 HYRMGKPSAKAASDGSKEVLPAAIAATLAVIAVFLPVVFMDGIIGKFFFQFGVTMSAAVS 484

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ I       +     K +++
Sbjct: 485 LSLLEAVTITPMRAAALLSSEPKVSKL 511


>gi|333031283|ref|ZP_08459344.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides coprosuis DSM 18011]
 gi|332741880|gb|EGJ72362.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides coprosuis DSM 18011]
          Length = 1033

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/617 (11%), Positives = 176/617 (28%), Gaps = 47/617 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G +      L    +D++P   P               + +    
Sbjct: 9   RPVFSAVISILIVILGFI-----GLKLLPIDQYPQITPPV-------------VSISASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       +   L        +   S        +++F  S   +  A ++  
Sbjct: 51  SGASATTVSQAVATPIEQELNGTPGMLYMESSSSNTGGFSASITFDISVDADLAAVEIQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   S+L  +  +N +    +    ++      D      I  S       +D +   
Sbjct: 111 RVKLAESRLPAEVVQNGISVEKKSPSQLMTLCLKSDDPKFDEIYLSNFATINVVDLLRRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P +L     T   +       N      + G + +   D
Sbjct: 171 PGVGRVSNVGSRYYAMQIWVQPDKLANFGLTVGDLKNALKEQNTESAAGILGGQPVEGLD 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                           +   T        +    +                 +    +  
Sbjct: 231 RT--------------IPITTQGRLSSVAEFEDIVLRANPDGSIIRLRDVARVSLEASSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +     +    +  ++ A       + V          
Sbjct: 277 STESGINGENAAVLNVYMLPGANAVDVSKEVREVMELISANFPDGLSHEVTFDITDYISQ 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T      LV++V+F+ +   +  L+   ++ +++I T  ++ + G +L L ++
Sbjct: 337 SISEVYKTLFEALALVILVVFLSLQSWRATLIPVVAVPISLIGTFGMMLIFGFSLNLLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L IG+ VD  I+V E +      +  S + +     S   S +  +++  +   V 
Sbjct: 397 LGLILAIGIVVDDAIVVVESVELIMREEKLSAYDATKKAMSGLTSALIATSLVLVAVFVP 456

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G   R F IT+ +S++IS   A+++   M   I++ +  K   I      +L
Sbjct: 457 VSFLSGITGSLYRQFTITIAVSVIISTIVALTLSPVMCSLILKPQTGKKNFIFRRINLWL 516

Query: 534 IPDCIAIQ------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                             +       ++  +  +           ++ +G  ++ +    
Sbjct: 517 NIGNHKYIDAIRKVVKHPKRVVGVFGMMLVLIFVLNKVLPTSFLPVEDQGFFKVELELPE 576

Query: 588 PVDLSVVRSNLESLQIG 604
              L   R   +     
Sbjct: 577 GSTLERTRKITDRAINY 593



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 87/244 (35%), Gaps = 7/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V                       L        ++V  ++ +  V + I+   P     
Sbjct: 265 DVARVSLEASSYSTESGINGENAAVLNVYMLPGANAVDVSKEVREVMELISANFPDGLSH 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                      + I +    +  +   +++ +++    W   L  +  + + +  T G  
Sbjct: 325 EVTFDITDYISQSISEVYKTLFEALALVILVVFLSLQSWRATLIPVVAVPISLIGTFGMM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +FG   NL  +  ++  IG  V+D +VV + +   + +    +S  D   K+++     
Sbjct: 385 LIFGFSLNLLTLLGLILAIGIVVDDAIVVVESV--ELIMREEKLSAYDATKKAMSGLTSA 442

Query: 772 SVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + TS+      +P+  + G  GS+   F I +A  ++++   ++   +P++  +     
Sbjct: 443 LIATSLVLVAVFVPVSFLSGITGSLYRQFTITIAVSVIISTIVAL-TLSPVMCSLILKPQ 501

Query: 829 KNAR 832
              +
Sbjct: 502 TGKK 505



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + TL +    +     + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 887  SWSVPIAVLLTLPVAALGSYLGVWICGLENDIYFQIGLVMLMGLAAKNAILIVEFAK--- 943

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 944  VQVDKGEDLIHSALYAARLRFRPILMTSLAFILGMLPMVLASGPGSASRKAIGTGVFFGM 1003

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A +  I       + IY  + K  +
Sbjct: 1004 IFATAIGIIFVPFFFVLIYKMKGKLRK 1030


>gi|332343856|gb|AEE57190.1| multidrug transporter MdtB [Escherichia coli UMNK88]
          Length = 693

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 71/652 (10%), Positives = 171/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++  F++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|53715424|ref|YP_101416.1| putative cation efflux transporter [Bacteroides fragilis YCH46]
 gi|60683397|ref|YP_213541.1| putative transmembrane Acr-type transport protein [Bacteroides
           fragilis NCTC 9343]
 gi|52218289|dbj|BAD50882.1| putative cation efflux transporter [Bacteroides fragilis YCH46]
 gi|60494831|emb|CAH09638.1| putative transmembrane Acr-type transport protein [Bacteroides
           fragilis NCTC 9343]
          Length = 1052

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/528 (12%), Positives = 158/528 (29%), Gaps = 40/528 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEYGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP +L     T   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPGKLEAYNLTIETISSIIGAENKNIPGGNFDIGNETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  ++  + +                            +      +   +       
Sbjct: 232 EFDDSRQLEDVVVGSY--------------------NGANVYLRDVARVVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVKGAMIVVQKQSGANSVDISKKVAEALPKLQKNLPSDVKLGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LAETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAVTGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           G +    +     M   + IS   A+S+   +   ++R +K +S    
Sbjct: 452 GMSGVMFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKQSKTFK 499



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 92/249 (36%), Gaps = 7/249 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V   +++++       N   +   +V  +    +SV  ++ +     K+ + +P
Sbjct: 251 NVYLRDVARVVDTVEERAQETYNNGVKGAMIVVQKQSGANSVDISKKVAEALPKLQKNLP 310

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                   +         I      V+ + + ++I +++   +W   L    T+ L +  
Sbjct: 311 SDVKLGVIVDTSDNILNTIDSLAETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIA 370

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           +  + A+ G   N+ +++++   IG  V+D +VV + +             +       N
Sbjct: 371 SFIYLAVTGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTN 427

Query: 767 ETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++       P+  V G  G +       M   + ++  +++ +   +   +
Sbjct: 428 EVAISVIASTLTMIAVFFPLTMVSGMSGVMFKQLGWMMCAIMFISTVAALSLTPMLCSQL 487

Query: 824 YDWRAKNAR 832
              + K ++
Sbjct: 488 LRLQKKQSK 496



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 77/241 (31%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L  +            ++  +V +            V           +P +      
Sbjct: 793  KELGKVVERFAPPTIERKDRERIVTVSAVISGEALGNVVNAGNAIIDKMDIPSNVTIQVA 852

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + ++I  + + I +  +F+   +    + +L    +  L      
Sbjct: 853  GSYEDQQDSFRDLGTLAILI-VVLVFIVMAAQFESLTYPFIIMFSLPFAFSGVLMALFFT 911

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                ++ ++   + LIG  V + +V+ D +          ++  + +  +    L   + 
Sbjct: 912  KSTLSVMSLLGAIMLIGIVVKNGIVLIDYI---TLCRERGLAVLNSVVTAGKSRLRPVLM 968

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+    + ++PMA+ GG    +    AI +  G+ V+   ++ +   +         K+ 
Sbjct: 969  TTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTVSTILTLVLIPTLYCVFAGTGIKHQ 1028

Query: 832  R 832
            R
Sbjct: 1029 R 1029


>gi|300698006|ref|YP_003748667.1| Acriflavin resistance/Multidrug efflux transporter AcrB [Ralstonia
           solanacearum CFBP2957]
 gi|299074730|emb|CBJ54288.1| putative Acriflavin resistance/Multidrug efflux transporter AcrB
           [Ralstonia solanacearum CFBP2957]
          Length = 1034

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/669 (12%), Positives = 190/669 (28%), Gaps = 41/669 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+ + ++   GL+        +  +  FP                     LE  
Sbjct: 9   RNPVPAVLCFILLTLFGLI-----GFHKLQVQDFPDMDLPTI---------SISASLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L K       +      I++SF   +  +    +V   + G
Sbjct: 55  APSQLENEVARKIEDKLTSLSKLDHVTTKITDGAVSISVSFKLEKDPQTALSEVRNAVDG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +     +  +     +++    +   +     + S  +       +   +   
Sbjct: 115 ARASLPSEMAAPTVSKSDAANSALLTYTASSATL--DEQDLSWFVDNDLAKALLSVKGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I  ++  + +P+ +  L  T   +S         + G    +   R S     
Sbjct: 173 KVERIGGIDREVHVDLNPALMAGLGLTAETVSSQLTAMQRERSGGQGDIGGQRQSARTLI 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +++                     ++      RR        I    A      
Sbjct: 233 GVGSAADVAA--------------------LTLATGDGRRVRLDQIARITDGAAERASYA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +     +     S    +       A        ++L       V     +   
Sbjct: 273 FLDGKPVVGVQITRAKGNSDVTVLHDVRNAIATFAGAHPEVRLVEAS-NTVSPIEDNYEG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L + V++  +  G+  LV+  ++ L++I T  ++ L G +L   ++  + 
Sbjct: 332 SMSMLIEGALLAIAVVWWFLRDGRATLVSAAALPLSIIPTFGVIYLAGYSLNTITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  ++ + +           +  +    +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIERHLRMGKTPYQAAMEAADEIGLAVIATTFALVAVFLPTAFMS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T  +++L+S+  A  +   M  +++      +   +PL   +L     
Sbjct: 452 GIPGLIFRQFGVTASVAVLMSLLVARLLTPMMAAYLM-KATGHAERDSPLMTRYLRWVAG 510

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +          G+ +L S+     L T         +  + L +     ++ S   +  
Sbjct: 511 GLDKRGRTMLAAGLMLLLSLAMAAALKTGFFPAQDKAQTQVTLELTPGSTLEQSRAVALQ 570

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
               I  +                  P    + T  +      +  +           V 
Sbjct: 571 AEALIRRLPEVKGVFSTVGSASDSGNPATGTSSTADVRTSTLVVDLVARGERKSKQSAVE 630

Query: 659 PKISRELIR 667
             I  +L  
Sbjct: 631 EAIRHQLRD 639



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 77/229 (33%), Gaps = 8/229 (3%)

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              + +   F   K  +     +   +   T + ++     T       ++  E      
Sbjct: 264 GAAERASYAFLDGKPVVGVQITRAKGNSDVTVLHDVRNAIATFAGAHPEVRLVEASNTVS 323

Query: 662 SRELIRKGIVGVII--SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
             E   +G + ++I  + +A+ +  W        L +   L L I  T G   L G   N
Sbjct: 324 PIEDNYEGSMSMLIEGALLAIAVVWWFLRDGRATLVSAAALPLSIIPTFGVIYLAGYSLN 383

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
              + A+  ++G  V+D +V  + +    +      +      ++ +E     + T+ A 
Sbjct: 384 TITLLALSLVVGILVDDAIVEIENI---ERHLRMGKTPYQAAMEAADEIGLAVIATTFAL 440

Query: 780 FISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               LP A   G        F +  +  ++++   +  +   +  ++  
Sbjct: 441 VAVFLPTAFMSGIPGLIFRQFGVTASVAVLMSLLVARLLTPMMAAYLMK 489



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 58/158 (36%), Gaps = 4/158 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
              +    +   EL +   + + I    +   + + F  +      +  L L +   L  
Sbjct: 831 HQVQQGELQNMSELFQSFGLAMAIGVFCVYAVLVLLFHDFLQPATILCALPLSLGGALLS 890

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +  + F++ A+  +L L+G    + +++ +     M      +S    +  + ++   
Sbjct: 891 LLITRMSFSMPALIGLLMLMGIVTKNSILLVE--YAIMARREHGLSRLAALMDACHKRAR 948

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             V T++A    +LP    G     SF  PMA  ++  
Sbjct: 949 PIVMTTIAMGAGMLP-NALGLGAEPSFRQPMAIVVIGG 985


>gi|300023622|ref|YP_003756233.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525443|gb|ADJ23912.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 1051

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 64/588 (10%), Positives = 153/588 (26%), Gaps = 39/588 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  IG +  L     +  + ++P+ +P               + +    
Sbjct: 9   RPVLANVIAILMVVIGAVSVL-----RLPVAQYPNVVPPT-------------VQVTTRY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       +   +   E +         +    +T++F       N    V  
Sbjct: 51  PGANARTVIDTVALPIEQQVNGVENMIYMQSYAASDGTYTLTVTFDIGTDLNNAQILVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L    +   +V   +    + +           ++  S     +  D+I   
Sbjct: 111 RVSAAMASLPQSVQVQGVVVQKKSTSILQIVTLTSPNNKFDSLYLSNYATIRLKDEISRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +++        +       +        G+  +    
Sbjct: 171 PGVGNVNVFGAGQYSMRVWLDPEKMQARSLNAQDVINALQQQSEQVTAGQIGMPPVAGDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY ++              ++      +    +                 +       
Sbjct: 231 SFQYTLD-------------VSSRFDDASQFANVVVKTGTNGDLTRLRDVGRVELGAQTY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +        L           +          
Sbjct: 278 AQIFNLNGQQAAGLAIFQTPGANALDVAKEVNTKMQALAKEFPEGVEYTIPFDTTIFVQQ 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T    A LVLIV+ + +   +  LV   ++ + +I   A ++ +G ++ L ++
Sbjct: 338 AIDEVYKTLFEAAILVLIVILVFLQDWRAMLVPATTVPVTIIGAFAAMAAMGFSINLSTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIAT 474
             IVL IG+ VD  I+V E       K  S   +     +     I       +   +  
Sbjct: 398 FAIVLAIGIVVDDAIVVVEGAAHNIEKGMSGHDASIAAMNALMGPIIGITLVLMAVFLPA 457

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G     FA+ +  + LIS   A ++        +R              F  +
Sbjct: 458 SFLPGLTGQMYAQFALVIAATALISAVNAATLKPTQCAMWLRRPVPPEQRNFFYRGFNAV 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            D +  ++ R     V  S L ++ +  ++            G + + 
Sbjct: 518 YDRLEGRYTRLIDRMVHHSGLMALIAAAIIGGSIYGMTRVATGFLPIE 565



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 63/169 (37%), Gaps = 9/169 (5%)

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G +  + +   +L+Y+ +      WY  L  +  + L +   +G      I+ NL     
Sbjct: 870  GQIYYVFALAMLLVYLVLAGQYESWYTPLAVLFAVPLSLIGPVGVMLGLRIDNNLYVQIG 929

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LI  S  + +++ +  R+         S  D   ++        + TS A  + V P
Sbjct: 930  LVLLIALSAKNAILIVEVARELRAE---GKSIMDSAVEAARARFRPILMTSFAFILGVAP 986

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +    G S   S  I +  G++ +   ++     + + I  +     
Sbjct: 987  LVLATGAGASARKSIGITVFSGMIASTCLAVIFVPSMFVVIQRFEEWRK 1035


>gi|317405131|gb|EFV85474.1| AcrB/AcrD/AcrF family protein [Achromobacter xylosoxidans C54]
          Length = 1071

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/516 (12%), Positives = 140/516 (27%), Gaps = 19/516 (3%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +   +    +E  + ++             N  +T++F      +     V 
Sbjct: 51  YPGANPKVIAETVASPLEESINGVENMLYMQSQANSDGNLTLTVNFKLGVDPDKAQQLVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  D ++  + TT       ++                   I    D++  
Sbjct: 111 NRVSQALPRLPPDVQRLGVTTTKSSPTLTLVVHLISPNDRYDITYLRNYAILNIKDRLAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP ++ Q   T A++       N      + G       
Sbjct: 171 ITGVGEVTVWGAGNYSMRVWLDPQKVAQRGMTAAEVVAAIREQNVQVAAGVIGASPTLGD 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V  +  +                 +    I                 +      
Sbjct: 231 VPLQLNVNARGRLQTEE-------------EFRDIILKTSPDGAVTHLSDVARVELDAQE 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L                +            A L     P     +E        
Sbjct: 278 YGLRSLLDNKQAVGMGIMQSPGANALDVSSQVRAAMAELAQDFPPGVEYRIEYDPTQFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+ + +   +  ++   ++ ++++ T  LL + G ++   S
Sbjct: 338 SSIEAVVHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFGLLLMFGYSINALS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +        S   +           I    +T     V 
Sbjct: 398 LFGMVLAIGIVVDDAIVVVENVERNIAAGLSPRDATYRAMREVSGPIIAIALTLCAVFVP 457

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK--SIDINPLSRF 531
           L F     G   + FA+T+ +S +IS F ++++  A+   +++    K   +       F
Sbjct: 458 LAFMTGLTGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLKSHHDKPDWLTRGMNRVF 517

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
               +     F RA                  +  +
Sbjct: 518 GRFFNWFNNMFGRASESYGVGVSGVIRRKAGAMGVY 553



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILAALTGVYLTGNDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEMNGRTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +F+     + +     K 
Sbjct: 1019 LGVTLFGLFLTPVFYVLLRSMGGKK 1043



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T G   +FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFGLLLMFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S RD   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 425 A---GLSPRDATYRAMREVSGPIIAIALTLCAVFVPLAFMTGLTGQFYKQFAMTIAISTV 481

Query: 807 VAASSSI 813
           ++A +S+
Sbjct: 482 ISAFNSL 488


>gi|152980068|ref|YP_001353255.1| multidrug-efflux system protein [Janthinobacterium sp. Marseille]
 gi|151280145|gb|ABR88555.1| multidrug-efflux system protein [Janthinobacterium sp. Marseille]
          Length = 1072

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 63/548 (11%), Positives = 149/548 (27%), Gaps = 31/548 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L ++I   GL+  L        +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSAIILIGGLISML-----NLPISEYPEVVPPSVVVKA---------NFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PQTIAETVSTPIEEQINGVEGMLYMQSQATSDGLMTLTVTFKLGVSPDQAQQLVQNRVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + TT       ++                   +    D++       
Sbjct: 116 ALPRLPDVVQRLGVTTTKSSPDLTMVVHLVSPNDRYDMAYLRNYAVLNVKDRLARLPGIG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++ +   +   +       N +    + G          Q 
Sbjct: 176 AVQLFGSGDYSMRVWLDPRKVAERGLSANDVVDAIRQQNVNVAAGVIGASPSVPGVDYQI 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +S                +    +                 +    +      
Sbjct: 236 SVNAQGRLSTED-------------EFRDIVIRTSPDGVVTRLRDVARVELGASEYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +            A L+          +          S   
Sbjct: 283 LLNNKSAVAIPIFQSPGSNALDISNNVRKTMAELKKDMPEGVDYSIVYDPTQFVRASIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV+ + +   +  ++   ++ ++VI T A++  LG ++   S+ G+V
Sbjct: 343 VVHTLLEAILLVVIVVIIFLQTWRASIIPLLAVPVSVIGTFAVMMGLGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +        +   +           I    +T     V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIEDGLTAREATYKAMREVSGPIVAIALTLSAVFVPLAFVS 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++                     +
Sbjct: 463 GLTGQFFKQFALTIAISTVISAFNSLTLSPALAALLLKSHGAPKDKFQLTIDRLFGWFFV 522

Query: 539 AIQFMRAR 546
               +  R
Sbjct: 523 RFNKVFHR 530



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/240 (10%), Positives = 77/240 (32%), Gaps = 11/240 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      D   +        +         +     V+E +  +               
Sbjct: 813  KMTQSYGPDQFIRYNGFPAADVNGGPAPGYSTGQAQAVVERLLAETLPRGISYEWTEITY 872

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                    L     V + ++ + +   +  +++     L  +  + + +   +    L G
Sbjct: 873  QDKIAGDTL----FVILPLAMLLVFFVLAAQYESLTLPLAVLLIVPMGLLSAIFGVWLTG 928

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + N+    +++ L+G +  + +++ +  R+   L        +   ++    L   + T
Sbjct: 929  GDNNIFTQISLIVLVGLACKNAILIVEFARE---LEHQGRGIYEAAIEAARLRLRPILMT 985

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S+A    V+P+ +    G  +  +  + +  G++   +  +F+     + +     K  R
Sbjct: 986  SIAFIAGVVPLIMSTGAGAEMRHAMGVAVFSGMIGVTAFGLFLTPIFYVLLRTLEKKFTR 1045


>gi|218529295|ref|YP_002420111.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
 gi|218521598|gb|ACK82183.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
          Length = 1063

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 76/555 (13%), Positives = 160/555 (28%), Gaps = 33/555 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  +I   G L  L        + ++P  +P          +           
Sbjct: 9   RPRLAVVIAIVISIAGALALL-----TIPVAQYPDIVPP---------QVSVTTTYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +     + K            +  +T SF      +  A  V   +Q 
Sbjct: 55  ADVVESTVAQPIESQVVGVDKMIYMKSVSGNDGSYTLTGSFELGTDPDINAVNVNNRVQI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +KL  D +K  +    +    + +      +     +  S  +    +D+I  +    
Sbjct: 115 ALAKLPEDVRKQGVTVKKKSSALLGVLAVYSPKSTQDPLFISNYVTINLLDRIKSTPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +       +L  L  TT  +       N        G R + D    Q 
Sbjct: 175 DATLWGPQDYAMRAWVRTDQLTGLSLTTGDVIGAIQAQNVQAPVGRIGARPISDEQQLQL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  ++                +    +                 +    A +    
Sbjct: 235 SIQTQGRLTSAE-------------QFRNIVLRTNPDGSVLRLGDVARVDLGAANLDRET 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T++        L           V          +   
Sbjct: 282 RLNGSPATVIAIYQSPGANALSTLKEVERRVGELAKTFPEGLAWKVTYDPTAFITETVHE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+IV+F+ +   +  L+   ++ +++I T  +L  +G +    S+  +V
Sbjct: 342 VQKTLIEAFVLVVIVVFLFLGSLRATLIPTLAVPVSLIGTFIVLKAVGYSANSVSLLALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     ++   S   +     +   + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEHPELSPRDATKRAMAEITAPIIAITLVLLSVFVPVAF 461

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R FA+ + +S+ IS   A+++  A+   ++R        I  +    +   
Sbjct: 462 VPGISGELFRQFAVAVAVSMFISAINALTLSPALCGVLLRPHHGPRRGIMGMVMRSIDRV 521

Query: 537 CIAIQFMRARFWGVG 551
                   AR     
Sbjct: 522 SNGYGAAVARIVRFS 536



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 66/180 (36%), Gaps = 9/180 (5%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFA 712
                   +E   +G   +I+    +  +   + +   W   +  + ++ + I        
Sbjct: 856  EWTDTAFQEKRAEGKTAIILGFAVLFAFLFLVALYESWTIPVPVLLSVTVGIAGAYASMV 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
               +  +L A   ++ LIG +  + +++ +  ++        +  +    +         
Sbjct: 916  WGKLTLDLYAQIGMIVLIGLAAKNGILIVEFAKEQR---EKGVPLQKAATEGARLRFRPV 972

Query: 773  VYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + TS A  + +LP+ +  G+      +   P+  G++ A+   IF+  P+ +     R +
Sbjct: 973  MMTSFAFILGLLPLVIAVGASQLARRNVGTPVFGGMIAASFLGIFVIPPLYVLFQGLRER 1032



 Score = 41.6 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
                L     + + +  T       G   N  ++ A++  IG  V+D +VV    +R+ 
Sbjct: 363 SLRATLIPTLAVPVSLIGTFIVLKAVGYSANSVSLLALVLAIGIVVDDAIVVVENVERVM 422

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +        +S RD   +++ E     +  ++      +P+A      G +   FA+ +A
Sbjct: 423 EE----HPELSPRDATKRAMAEITAPIIAITLVLLSVFVPVAFVPGISGELFRQFAVAVA 478

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++A +++ ++  +
Sbjct: 479 VSMFISAINALTLSPAL 495


>gi|91225359|ref|ZP_01260527.1| putative multidrug resistance protein [Vibrio alginolyticus 12G01]
 gi|91189998|gb|EAS76270.1| putative multidrug resistance protein [Vibrio alginolyticus 12G01]
          Length = 1037

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 62/651 (9%), Positives = 177/651 (27%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVAALVLSMLLCVFGFVS-----FTKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGVDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +    R  +D+  +     
Sbjct: 115 AQRSLPDEADDPIVYKNNGSGEASLYINLSSAE--MDRTQLTDYAERVLMDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SIDLSGGLYKVMYVKLKPELMAGRSVTASDITSALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +          +     ++           
Sbjct: 219 -----VRNDSTVMSVRTARTYNTPEDFQYLVIKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++         S   
Sbjct: 274 KSDGVVNISLGVVPQSDANPLEVAKLVRSEVDNIQKFLPEGTRLAIDYDATVFIERSIEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   I++     +     + R F   +  
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNRFNEAVDRLFSKLESG 513

Query: 539 AIQFMR--ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               ++   +       ++ +         + +   +  +    +     R  D +    
Sbjct: 514 YRALLKGALKVRWAAPLVILACLGGSYFLMNQVPAQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MSANMDIVEDRLMPLLGQGYLKSFSIQTPAFGGQAGDQTGFVIMILEDWNE 624



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L +          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARTYNTPEDFQYLVIKRASDNTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L   P        V ++V+ ++  I           +    +  + R        +
Sbjct: 279 VNISLGVVPQSDANPLEVAKLVRSEVDNIQKFLPEGTRLAIDYDATVFIERSIEEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNR 498



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 49/143 (34%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        + G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLVIMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    + F   I  +    L   + T+       +P+ V    G     +    + FG+
Sbjct: 931  QLRDRGVGFEKAIIDAAARRLRPILMTAFTTLAGAIPLIVSTGAGYESRIAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
              A   ++F+   +   I     
Sbjct: 991  GFATLVTLFVIPAMYRLISAKTQ 1013


>gi|27382441|ref|NP_773970.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
 gi|27355612|dbj|BAC52595.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
          Length = 1040

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 76/583 (13%), Positives = 177/583 (30%), Gaps = 41/583 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   G L  +     Q  + +FP  +P               + +    
Sbjct: 9   RPRLSMVIAFIITIAGALALM-----QIPVAQFPDIVPP-------------QVTVSGTF 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  ++      L + +           +     +  +T+SFA     +     V  
Sbjct: 51  PGASAEVVESSVAQPLEAQIIGVDRALYMKSTSANDGSYTLTVSFALGTNPDINTVNVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S+L  + ++  +         +              +  +   I   +D I  +
Sbjct: 111 RVQSALSQLPTEVQQQGVTVHKRSSSILQFLVLYSANGQQDPLFITNYAIINVLDAIAST 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q     ++   +    D  RL  L  T + +       +        G R + D  
Sbjct: 171 PGVGQANLFAKMNYSMRIWFDTQRLTSLDLTPSDVIAAIRTQSVQAPVGRIGARPISDDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V+    ++ +              +    +                 +      +
Sbjct: 231 QLQFNVQTLGRLATVD-------------QFANIVLRANPDGSSLLVKDVARVEMGAQNL 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +   T +        L          +V+  +      
Sbjct: 278 DSEARIDGRAAVPVAIYLAPGANAMSTAQAVAATMQRLSLRFPTGLSYLVQYDSTSFVRD 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +    T      LV+IV+++ +   +  ++   ++ ++++ T A+L +LG +    S+
Sbjct: 338 TITEVLRTLGEAFVLVVIVVYLFLGNLRATVIPAVAVPVSLVGTFAVLLVLGYSANTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E +          S   +     ++  + I    +  L   V
Sbjct: 398 LAMVLAIGIVVDDAIVVVENVERVMEEEPGLSPAEASKKAMTQITAPIIAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G +    R FA+T+  +++IS   A+++  A+    +R+   +   +  +  F 
Sbjct: 458 PIAFIPGISGTLFRQFAVTISAAMMISALNALTLSPALCALFLRHTGPRRGIMGRVLGFI 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
                     +R      G+S+ F       +F   L     F
Sbjct: 518 DWLRDRYSGGVRRLVRVPGLSLPFVAVVAAGIFGMSLITPTGF 560



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 88/248 (35%), Gaps = 6/248 (2%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  V   +L  ++I               V +   P   V+    +  + +    ++
Sbjct: 789  NGAGQMVPIRSLAGIRIVTGPQVITRYNNYRSVTVNGSPAPGVSSGTAMVAMAEISNTVL 848

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            P            +  +   + GIV ++    A L  + +       +  + ++++ +  
Sbjct: 849  PAGYSFAWTGTAYQEQQAAGQTGIVLMLAVLFAYLFLVALYESTVIPIPVLLSVVVGVLG 908

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +     L G+  +L     ++ LI  +  + +++ +  ++  +     ++  D   +  +
Sbjct: 909  SYVGIKLAGLNLDLYGQIGLVVLIALAAKNGILIVEFAKEQREA---GVALNDAAIQGAH 965

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + TS+A  + +LP+ +  G+      +    +  G++ A+S  IF+   + +  
Sbjct: 966  MRFRAVMMTSVAFILGLLPLVIATGAAELSRRAVGTAVFAGMLAASSIGIFLVPTLYVTF 1025

Query: 824  YDWRAKNA 831
               R +  
Sbjct: 1026 QRLRERMK 1033



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 90/245 (36%), Gaps = 5/245 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  V       Q  D   +        +        ++++  + +    ++++   P   
Sbjct: 264 VKDVARVEMGAQNLDSEARIDGRAAVPVAIYLAPGANAMSTAQAVAATMQRLSLRFPTGL 323

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               +       R+ I + +  +  + + ++I +++        +     + + +  T  
Sbjct: 324 SYLVQYDSTSFVRDTITEVLRTLGEAFVLVVIVVYLFLGNLRATVIPAVAVPVSLVGTFA 383

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              + G   N  ++ A++  IG  V+D +VV + + + +      +S  +   K++ +  
Sbjct: 384 VLLVLGYSANTVSLLAMVLAIGIVVDDAIVVVENV-ERVMEEEPGLSPAEASKKAMTQIT 442

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +  ++      +P+A      G++   FA+ ++  ++++A +++ ++  +       
Sbjct: 443 APIIAITLVLLSVFVPIAFIPGISGTLFRQFAVTISAAMMISALNALTLSPALCALFLRH 502

Query: 827 RAKNA 831
                
Sbjct: 503 TGPRR 507


>gi|208435430|ref|YP_002267096.1| protein-export membrane protein [Helicobacter pylori G27]
 gi|208433359|gb|ACI28230.1| protein-export membrane protein [Helicobacter pylori G27]
          Length = 503

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 151/502 (30%), Positives = 262/502 (52%), Gaps = 21/502 (4%)

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
           +I+LGLDLRGG +++L V  D+ +       +  L    KK+ I +  ++     I+   
Sbjct: 11  KITLGLDLRGGLNMLLGVQTDEALKNKYLSLASALEYNAKKQNILLKDIKSSLEGISFEL 70

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
            D    + +   +          L +       +    +  S+ L+    +++  + I Q
Sbjct: 71  LDEDEAKKLDALL----------LELQGHSQFEIKKEAEFYSVKLTLLEQEELRKNTILQ 120

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP 219
            + IIR R+DQ G++E  + + G   I +QLPG +      R + L+  +A +    V  
Sbjct: 121 VIGIIRNRLDQFGLAEPVVIQQGREEISVQLPGIKTLEEERRAKDLISKSAHLQMMAVDE 180

Query: 220 --------NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                       +    G   L D +    ++   + I    +         + ++PVV 
Sbjct: 181 EHNKDAMKMTDLEAQKLGSVLLSDVEMGGKILLKAIPILDGEMLTDAKVVYDQNNQPVVS 240

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
            + D  GA+ F + +  N+GK +A+VLD +V +APVI + I  G  QISGNF++  A  L
Sbjct: 241 FTLDTQGAKIFGDFSGANVGKRMAIVLDNKVYSAPVIRERIGGGSGQISGNFSVAQASDL 300

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A  LR+G++   + ++E+R +G  LG DSI     A+V G +L++ FM++ Y   G++A 
Sbjct: 301 AIALRSGAMSAPIQVLEKRIIGPSLGKDSIKTSIIALVGGFILVMGFMVLYYSMAGVIAC 360

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ +N+ L +A++++ GATLTLP +AGIVL +G+AVD+NI++NERIRE  ++N+ +  +
Sbjct: 361 LALVVNLFLIVAVMAIFGATLTLPGMAGIVLTVGIAVDANIIINERIREVLKENEGIAKA 420

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           + +G+  A   IFDSNIT+LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   + + 
Sbjct: 421 IHLGYINASRAIFDSNITSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGIY 480

Query: 512 IFIIRYKKMKSIDINPLSRFFL 533
             ++                  
Sbjct: 481 QALLPKLTQTKSLYFWFGVNKR 502



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 72/157 (45%), Gaps = 4/157 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++ I+  I+ ++   I ++ ++ + +     + A   L++++   +   A+FG  
Sbjct: 322 GPSLGKDSIKTSIIALVGGFILVMGFMVLYYSM-AGVIACLALVVNLFLIVAVMAIFGAT 380

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ +K           I             +++
Sbjct: 381 LTLPGMAGIVLTVGIAVDANIIINERIREVLKENE---GIAKAIHLGYINASRAIFDSNI 437

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
            + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 438 TSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 474


>gi|91976288|ref|YP_568947.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
 gi|91682744|gb|ABE39046.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
          Length = 1034

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/541 (12%), Positives = 164/541 (30%), Gaps = 39/541 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V++  +I  IG   A         + ++P                         
Sbjct: 9   KRPVLSVVVSMLILLIGFRAA-----TTLPIRQYPKLSNTVVT---------ITTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +  +       S  Q Q+ IT+    +        +V   +  
Sbjct: 55  SPDLMQGFITTPIEQAVASAEGVDYITSSSTQGQSLITVYIKLNFDPNQALTEVLAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   +  +    ++V +T +  +++    +  ++   AI  S  + R     +   E   
Sbjct: 115 VKYLIPKEANDPVIVKSTGQTTAVMYIGFSSTELSGSAI--SDYLTRVVQPVLSTVEGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     +   ++      N           F   +     
Sbjct: 173 SADILGGQTFAMRVWLDPLKMAGRNVSPDDVAAAIRANNFQAAAGQTKGYFTVSNVSTNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                    +  +    ++                +           
Sbjct: 233 DL--------------------QNVEQFKRMTVKAKDGGFVRLQDVATVELAAQSTDSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L+             Q +    +     L   +     P     V   + G    S + 
Sbjct: 273 ALSGDRAIFIGVQATPQGNPLNIVSGVRKLFPEIERNLPPSLKMKVAYDSTGFIRSSITE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L++I     +  +G ++ L ++  +V
Sbjct: 333 VEKTLIEAVAIVIVVIFLFLASFRSVIIPVVTIPLSLIGVCTAMLAMGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +  +G       +    IT       + F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHLEEGKSPVQASLIGAREIVGPVISMTITLAAVYAPIGFLG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  ++++S   A+++   M   +++++  +S     + + F      
Sbjct: 453 GLTGALFREFAFTLAGAVIVSGVVALTLSPMMCSVLLKHQANQSWFARKVDQVFGATTRW 512

Query: 539 A 539
            
Sbjct: 513 Y 513



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 76/202 (37%), Gaps = 9/202 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           ++   +++ +   + +    ++         E+ +  I  V I  + + +++     +  
Sbjct: 301 KLFPEIERNLPPSLKMKVAYDSTGFIRSSITEVEKTLIEAVAIVIVVIFLFLA---SFRS 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +          G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 358 VIIPVVTIPLSLIGVCTAMLAMGFSINLLTLLAMVLAIGLVVDDAIVVVENIH---RHLE 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              S          E +G  +  ++       P+   G   G++   FA  +A  ++V+ 
Sbjct: 415 EGKSPVQASLIGAREIVGPVISMTITLAAVYAPIGFLGGLTGALFREFAFTLAGAVIVSG 474

Query: 810 SSSIFIAAPILLFIYDWRAKNA 831
             ++ ++  +   +   +A  +
Sbjct: 475 VVALTLSPMMCSVLLKHQANQS 496



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/191 (12%), Positives = 67/191 (35%), Gaps = 8/191 (4%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV--IISAIAMLIYIWIRFK-WYFALGA 696
              + +         +        + +     + +    + I + + +  +F+     L  
Sbjct: 816  DFLEQQSKNLPSGFSHSYLADARQYVQEGNQLAITFGFALIIIFLVLAAQFESLRDPLVI 875

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            + ++ + ++  L          N+     +LTL+G      +++ +  R+        + 
Sbjct: 876  MISVPMAVSGALIPLFFGVATINIYTQVGLLTLVGLISKHGILMVEFARE--LQLKEGLD 933

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVIGSFAIPMAF--GIVVAASSSI 813
             R  I+ S    L   + T+ A    +LP+    G      F+I +    G+++    ++
Sbjct: 934  KRSAIEMSARVRLRPILMTTAAMVTGLLPLLTASGAGAASRFSIGLVVVSGMLIGTLFTL 993

Query: 814  FIAAPILLFIY 824
            F+   + + I 
Sbjct: 994  FVLPAVYVAIG 1004


>gi|240137618|ref|YP_002962089.1| multidrug transport protein, acriflavin resistance protein F (RND
           family) [Methylobacterium extorquens AM1]
 gi|240007586|gb|ACS38812.1| multidrug transport protein, acriflavin resistance protein F (RND
           family) [Methylobacterium extorquens AM1]
          Length = 1063

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 76/555 (13%), Positives = 160/555 (28%), Gaps = 33/555 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  +I   G L  L        + ++P  +P          +           
Sbjct: 9   RPRLAVVIAIVISIAGALALL-----TIPVAQYPDIVPP---------QVSVTTTYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +     + K            +  +T SF      +  A  V   +Q 
Sbjct: 55  ADVVESTVAQPIESQVVGVDKMIYMKSVSGNDGSYTLTGSFELGTDPDINAVNVNNRVQI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +KL  D +K  +    +    + +      +     +  S  +    +D+I  +    
Sbjct: 115 ALAKLPEDVRKQGVTVKKKSSALLGVLAVYSPKSTQDPLFISNYVTINLLDRIKSTPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +       +L  L  TT  +       N        G R + D    Q 
Sbjct: 175 DATLWGPQDYAMRAWVRTDQLTGLSLTTGDVIGAIQAQNVQAPVGRIGARPISDEQQLQL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  ++                +    +                 +    A +    
Sbjct: 235 SIQTQGRLTSAE-------------QFRNIVLRTNPDGSVLRLGDVARVDLGAANLDRET 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T++        L           V          +   
Sbjct: 282 RLNGSPATVIAIYQSPGANALSTLKEVERRVGELAKTFPEGLAWKVTYDPTAFITETVHE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+IV+F+ +   +  L+   ++ +++I T  +L  +G +    S+  +V
Sbjct: 342 VQKTLVEAFVLVVIVVFLFLGSLRATLIPTLAVPVSLIGTFIVLKAVGYSANSVSLLALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     ++   S   +     +   + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEHPELSPRDATKRAMAEITAPIIAITLVLLSVFVPVAF 461

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R FA+ + +S+ IS   A+++  A+   ++R        I  +    +   
Sbjct: 462 VPGISGELFRQFAVAVAVSMFISAVNALTLSPALCGVLLRPHHGPRRGIMGMVMRSIDRV 521

Query: 537 CIAIQFMRARFWGVG 551
                   AR     
Sbjct: 522 SNGYGAAVARIVRFS 536



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 66/180 (36%), Gaps = 9/180 (5%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFA 712
                   +E   +G   +I+    +  +   + +   W   +  + ++ + I        
Sbjct: 856  EWTDTAFQEKRAEGKTAIILGFAVLFAFLFLVALYESWTIPVPVLLSVTVGIAGAYASMV 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
               +  +L A   ++ LIG +  + +++ +  ++        +  +    +         
Sbjct: 916  WGKLTLDLYAQIGMIVLIGLAAKNGILIVEFAKEQR---EKGVPLQKAATEGARLRFRPV 972

Query: 773  VYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + TS A  + +LP+ +  G+      +   P+  G++ A+   IF+  P+ +     R +
Sbjct: 973  MMTSFAFILGLLPLVIAVGASQLARRNVGTPVFGGMIAASFLGIFVIPPLYVLFQGLRER 1032



 Score = 41.6 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
                L     + + +  T       G   N  ++ A++  IG  V+D +VV    +R+ 
Sbjct: 363 SLRATLIPTLAVPVSLIGTFIVLKAVGYSANSVSLLALVLAIGIVVDDAIVVVENVERVM 422

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +        +S RD   +++ E     +  ++      +P+A      G +   FA+ +A
Sbjct: 423 EE----HPELSPRDATKRAMAEITAPIIAITLVLLSVFVPVAFVPGISGELFRQFAVAVA 478

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++A +++ ++  +
Sbjct: 479 VSMFISAVNALTLSPAL 495


>gi|78184852|ref|YP_377287.1| preprotein translocase subunit SecD [Synechococcus sp. CC9902]
 gi|78169146|gb|ABB26243.1| SecD export membrane protein [Synechococcus sp. CC9902]
          Length = 495

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 134/517 (25%), Positives = 217/517 (41%), Gaps = 49/517 (9%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----FVN 67
                + L IA   FL ++ L+            LGLDLRGGS L ++V          +
Sbjct: 7   WFAFVLALAIAAGMFLLRTPLE------------LGLDLRGGSQLTVQVQPAGDITRVGS 54

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKL 126
             ++     L   +   G+   +++ + +  + L     +     A  +           
Sbjct: 55  EEMEAVKAVLERRVNGLGVAESTLQTVGDTQLVLQLPGEQDPTRAARVLGSTAMLEFRAQ 114

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
               + +L                   + +     Q   I+R R DQ    +        
Sbjct: 115 KPGAEGDL-------------------RSLRQLRSQVRAILRLREDQARNGDPDNSDGID 155

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                      D     Q L      S  ++         + G    +       L    
Sbjct: 156 F----------DQLAEAQKLFGLDGESTSEIDQLQQLLEKVNGEIVQQFEPA--ALTGKD 203

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           +  +G        N    T     D +       +    T   +G  L           P
Sbjct: 204 LVTAGRQPLQNNPNSWEVTLSFNSDGAEAFAELTKSIAGTDRLLGIVLDGQAISEASVGP 263

Query: 307 VINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
               A    G A ISGNFT E A  L   LR GSLP+ + I+E R +G  LG+++I +  
Sbjct: 264 QFQAAGISGGSASISGNFTAEEARELEVQLRGGSLPLPVEIIEVRTIGPTLGAENIRRSL 323

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A ++GL  + +FM+V Y   G VA  ++ L  +  LA+ +L+  TLTLP IAG +L IG
Sbjct: 324 VAALSGLAFVAVFMVVAYRLPGAVAVVALSLYALFNLAMYALIPVTLTLPGIAGFILSIG 383

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +AVD+N+L+ ERI++E R+  ++  S+D GFS A+S+I D ++T LI+   LFF G G V
Sbjct: 384 MAVDANVLIFERIKDELRRGNTLIRSIDTGFSEAFSSIVDGHLTTLISCAALFFLGTGLV 443

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +GFA T+G+ +L+S+FTA++  R ++ F++ Y  ++S
Sbjct: 444 KGFAATLGIGVLLSLFTALTCTRTLLRFLMGYSGLRS 480



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 78/176 (44%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E IR+ +V  +     + +++ + ++   A+ A+  L L     L  +AL  
Sbjct: 309 TIGPTLGAENIRRSLVAALSGLAFVAVFMVVAYRLPGAV-AVVALSLYALFNLAMYALIP 367

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++      +    ID   +E     V  
Sbjct: 368 VTLTLPGIAGFILSIGMAVDANVLIFERIKDELR---RGNTLIRSIDTGFSEAFSSIVDG 424

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS   +   G  ++  FA  +  G++++  +++     +L F+  +    +
Sbjct: 425 HLTTLISCAALFFLGTGLVKGFAATLGIGVLLSLFTALTCTRTLLRFLMGYSGLRS 480


>gi|157371789|ref|YP_001479778.1| multidrug efflux system subunit MdtC [Serratia proteamaculans 568]
 gi|167008981|sp|A8GHR0|MDTC_SERP5 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|157323553|gb|ABV42650.1| acriflavin resistance protein [Serratia proteamaculans 568]
          Length = 1026

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/648 (10%), Positives = 168/648 (25%), Gaps = 38/648 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++      +       +P                     L   +
Sbjct: 10  RPVATTLLTLAIAISGVISFSLLPVSPLPQVDYPVIS--------------ISASLPGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               ++ L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERALGRIAGVNEMTSMSSLGSTRVILQFDLDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q   +I  +E    
Sbjct: 116 QSLLPTGMPSRPSYRKVNPSDAPIMI-LTLTSDTYSQGQLYDFASTQLAQKIAQTEGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +PS L     +   +       N  +       +  R        
Sbjct: 175 VSVGGSSLPAVRVELNPSALFNQGISLDAVRQTISNANVRRPQGSVENQQQRWQIQANDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++                      +    +                 +   +  V +  +
Sbjct: 235 LKTA--------------------EVYRPLIIHYNNGSAVRLSDVAEVNDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A        S     +   T++        L+          + +        S +  
Sbjct: 275 TNAKPAIILTISRAPDANIIETVDRIRAELPTLQNNIPASIQLNIAQDRSPTIRASLAEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +  I  GLV++V+F+ +  G+  L+   ++ +++I +   + L G +L   S+  + +
Sbjct: 335 EQSLVIAIGLVILVVFIFLRSGRATLIPAVAVPVSLIGSFTAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E I            +  +G      T+   +++ +   + L    G
Sbjct: 395 ATGFVVDDAIVVLENISRHIEAGMKPINAALVGVREVGFTVLSMSVSLVAVFIPLLLMEG 454

Query: 483 GA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R FA+T+ +SI +S+  ++++   M  +++R++  +S          L+     
Sbjct: 455 LPGRLFREFAVTLSVSIGLSLIISLTLTPMMCAYLLRHQPPRSQRRIRGFGKMLLALQKG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                +   G    +L    +   L               Q        +      S   
Sbjct: 515 YGRSLSWVLGHSRWVLAVFLATIALNVWLYVSIPKTFFPEQDTGRLMGFIQADQSISFQA 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                +   +    + +      +  G       +   +K        
Sbjct: 575 MRVKLEDFMKIVREDPDVDNVTGFTGGSRTNSGSMFISLKPLSVRSDD 622



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 87/255 (34%), Gaps = 7/255 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +       V LS V    +S+Q    +          L   +    + +     +     
Sbjct: 246 IHYNNGSAVRLSDVAEVNDSVQDVRNAGMTNAKPAIILTISRAPDANIIETVDRIRAELP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S   N         R  + +    ++I+   +++ ++I  +     L     
Sbjct: 306 TLQNNIPASIQLNIAQDRSPTIRASLAEVEQSLVIAIGLVILVVFIFLRSGRATLIPAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  +     L G   N  ++ A+    G+ V+D +VV + +    +     +   +
Sbjct: 366 VPVSLIGSFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHIEAGMKPIN 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ + 
Sbjct: 423 AALVGVREVGFTVLSMSVSLVAVFIPLLLMEGLPGRLFREFAVTLSVSIGLSLIISLTLT 482

Query: 817 APILLFIYDWRAKNA 831
             +  ++   +   +
Sbjct: 483 PMMCAYLLRHQPPRS 497



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 91/217 (41%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     +++ +T +   +T++       ++ +E ++  ++ +  +   
Sbjct: 803  TISFNLPDGGSLSDATAGIERTMTALGVPATVRGAFAGTAQVFQETLKSQLLLIAAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LFG  F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYIHPLTILSTLPSAGVGALLALELFGAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     IS  D I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALDAQRNG--GISAHDAIFQACLLRFRPIMMTTLAALFGALPLVLTHGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G++V+   +++    + L+    + K  R
Sbjct: 981  PLGITIVGGLIVSQLLTLYTTPVVYLYFDRLQMKFRR 1017


>gi|134098599|ref|YP_001104260.1| preprotein translocase subunit SecD [Saccharopolyspora erythraea
           NRRL 2338]
 gi|291008204|ref|ZP_06566177.1| preprotein translocase subunit SecD [Saccharopolyspora erythraea
           NRRL 2338]
 gi|133911222|emb|CAM01335.1| preprotein translocase subunit SecD [Saccharopolyspora erythraea
           NRRL 2338]
          Length = 531

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 114/555 (20%), Positives = 205/555 (36%), Gaps = 51/555 (9%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +    +    L   +        L             LG+DL+GG+ + L     D  
Sbjct: 12  RYLAIFTLIVAALYALVFLTGDHKPLP-----------KLGIDLQGGTRVTLTARTPDGR 60

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQG 121
              N  L      + + +   GI    + +  + + ++         + +     L  + 
Sbjct: 61  PPTNESLDQARQIIETRVNGMGISGSEVTRDGSNLVITVPGAGGEEAKQLGQTAELNFRK 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   + V             +     S            +   E  + R       +   
Sbjct: 121 VVPGMMVPATPPAPPNQAPPQGPAGNSPQGALNQQPAPADPIEEAKKTRQSTDPNVQMAA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
            +         L G  DP                                   D +G Q 
Sbjct: 181 LQALDCNAEDPLRGNDDPKL----------------------------PLVACDREGKQK 212

Query: 242 LVEDKVEISGIHLNGATANFDPK---THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            V + V + G  ++ A A+            VD+ F   GA+ + + T  N+ +  A VL
Sbjct: 213 YVLEPVFLEGKEIDSAQASPPNPTNGNPGWSVDLKFKSAGAKVWADFTSANVQQNAAFVL 272

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D  V++AP I   +  G A I+G F  ++A  LA +L+ GSLP+  +  E   V A LG 
Sbjct: 273 DTEVVSAPTIQAPLLGGNANITGQFNQQSATDLANILKYGSLPLAFDQSEAETVSATLGV 332

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTL 414
            S+  G  A   GL+L+ ++ +  Y   GL+   S+ L+  +  A+L LL    G TL L
Sbjct: 333 ASLEAGLLAGGLGLLLVAVYCLAYYRLLGLLTILSLVLSGAIVYAVLVLLGRWVGFTLDL 392

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
             +AG+++ IG+  DS I+  ER+++E R+ ++   ++   + RA  TI  ++  + +A 
Sbjct: 393 AGVAGLIIAIGITADSFIVFFERLKDEIREGRTFRSAVPRAWERAKRTILSADAVSFLAA 452

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            VL+    G V+GFA T+G+S ++ +     +   ++    + K +     + L     +
Sbjct: 453 AVLYVLAVGQVKGFAFTLGMSTVLDLVVVFLVTHPLVALASKNKFLSKPAFSGLGAVQRM 512

Query: 535 PDCIAIQFMRARFWG 549
                    RA    
Sbjct: 513 GAQHRADRKRAAQTT 527



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 16/103 (15%), Positives = 42/103 (40%), Gaps = 5/103 (4%)

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            ++  +   LG     G   +L  VA ++  IG + +  +V ++R++  ++      +FR
Sbjct: 373 AIVYAVLVLLG--RWVGFTLDLAGVAGLIIAIGITADSFIVFFERLKDEIRE---GRTFR 427

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
             + ++        +     +F++   + V     +  FA  +
Sbjct: 428 SAVPRAWERAKRTILSADAVSFLAAAVLYVLAVGQVKGFAFTL 470


>gi|332187125|ref|ZP_08388865.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Sphingomonas sp. S17]
 gi|332012825|gb|EGI54890.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Sphingomonas sp. S17]
          Length = 1075

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 66/528 (12%), Positives = 148/528 (28%), Gaps = 42/528 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G+   +        + ++P   P               + +    
Sbjct: 9   RPIFAWVLAIIVMLAGIGAIM-----GLPIAQYPDVAPP-------------QVSIRATF 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  LQ      +   L            S  +    IT +FA     +    +V  
Sbjct: 51  PGASAQTLQNSVTQVIEQQLTGIDGLLYFQSSSSSRGSVTITATFAKGTDPDIAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   ++L    ++  LV        ++++    +       + +  ++    D +G  
Sbjct: 111 QVQQSVARLPQQVQQQGLVVRKSNPDFLLIAGVYDETNRMTNQDVADYLVSNLQDPLGRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    +P +L       + ++      N        G      + 
Sbjct: 171 QGVGDTNVFGSQ-YAMRIWLNPEKLASYQLMPSDVTTAIQNQNTEVAAGEVGGTPSAQTQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  +  +                 +    I                 I       
Sbjct: 230 MLNATVTSQSRL-------------QTPEQFREIIVKTLNNGATVKLSDVARIELGAESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                    T E        +     P                
Sbjct: 277 AAVSRINQHPGAGIAVLMAPGADALKTAELVKAEITRVAKTFPPGLKVAYANDTTAFIKL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+IV+F+ +   +  L+   ++ + ++ T A+  L G ++   ++
Sbjct: 337 SIDEVVKTLIEAIILVVIVMFVFLQSWRATLIPTIAVPVVLLGTFAIFYLAGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            G+VL IGL VD  I+V E +    E   + +   +           +    +      +
Sbjct: 397 FGLVLAIGLLVDDAIVVVENVERLLEENPDMTPREATIESMREITVALIAIALVLSAVFL 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            + FFGG      R F+IT+  ++++S+  AI +  A+   +++ K  
Sbjct: 457 PMAFFGGSTGVIYRQFSITIVSAMILSVAVAIILSPALTATLLKRKAK 504



 Score = 89.4 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 103/285 (36%), Gaps = 5/285 (1%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S    + +  +     L     F+  I   +     V LS V       +      + 
Sbjct: 223 TPSAQTQMLNATVTSQSRLQTPEQFREIIVKTLNNGATVKLSDVARIELGAESYAAVSRI 282

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                  +  L     D++    +++    ++ +  P               +  I + +
Sbjct: 283 NQHPGAGIAVLMAPGADALKTAELVKAEITRVAKTFPPGLKVAYANDTTAFIKLSIDEVV 342

Query: 671 VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +I + I ++I +++    W   L     + + +  T   F L G   N   +  ++  
Sbjct: 343 KTLIEAIILVVIVMFVFLQSWRATLIPTIAVPVVLLGTFAIFYLAGFSINTLTLFGLVLA 402

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV + + + +      ++ R+   +S+ E     +  ++      LPMA +
Sbjct: 403 IGLLVDDAIVVVENV-ERLLEENPDMTPREATIESMREITVALIAIALVLSAVFLPMAFF 461

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           GGS       F+I +   ++++ + +I ++  +   +   +AK  
Sbjct: 462 GGSTGVIYRQFSITIVSAMILSVAVAIILSPALTATLLKRKAKEG 506



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 65/168 (38%), Gaps = 8/168 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   +S + + + +   ++ W      +  + L +   + F  L G+  ++     +
Sbjct: 885  QAPILYALSILVVFLCLAALYESWSIPFAVLLVIPLGLIGAVAFVTLRGLTNDVYLQIGL 944

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT +G +  + +++ +   +  +         D   ++    L   + TS A    VLP+
Sbjct: 945  LTTMGLAAKNAILMIE-FAEQAEKQGKR--VIDAALEAAKIRLRPILMTSFAFIFGVLPL 1001

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A+    G +   +    +  G++ A   +IF   P+   +     +N 
Sbjct: 1002 AISTGAGANSRIAIGTAVIGGMLTATVLAIFYI-PLFFVLVRRSVRNG 1048


>gi|238926903|ref|ZP_04658663.1| possible acridine efflux pump [Selenomonas flueggei ATCC 43531]
 gi|238885137|gb|EEQ48775.1| possible acridine efflux pump [Selenomonas flueggei ATCC 43531]
          Length = 577

 Score =  161 bits (405), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 70/549 (12%), Positives = 147/549 (26%), Gaps = 31/549 (5%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
              + ++P   P                         VN  +    +E  +  +      
Sbjct: 29  SLPIAQYPQISPPTV---------SVSASYTGASAAVVNETVAQVIEEQINGTQGMDYMS 79

Query: 89  FSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
            +        ++++F      +  A KV     G N+ L    +   + T          
Sbjct: 80  STSDDTGRYSLSVTFDVGTDGDMDAVKVQNNAAGANASLPSSVQSAGVTTRKSSGQMAYF 139

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
                +                 +D I                  +    +P RL +L  
Sbjct: 140 VSMYSEDGTYDRTFMKNYATLYFLDAIKRINGVGDVQVFGS-DYAMRVWLNPDRLAELGL 198

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           T A ++      N        G     +    Q+  + +  ++                +
Sbjct: 199 TVADITAAIKEQNVQAPAGTVGGMPTVNGQEKQFTGKVQGRLT-------------TPEE 245

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
               I                 I                          +  +   T+  
Sbjct: 246 FGNVIIASGKDGSFVRLKDVARIETGARNNNIVAKFNGYPAVGFGIQLTSDANAMITLAE 305

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
              + A       P         +      S      T      LV++V+F+ +   +  
Sbjct: 306 VRKVLAEAEKSFPPGLKMQSVFDSTDYINASIKEVVHTFVEALLLVVLVIFVFLQSWRAT 365

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           ++   ++ +++I T     LL  ++   ++  +VL IGL VD  I+V E +        S
Sbjct: 366 IIPLLAVPVSLIGTFGTFVLLDFSINTLTLFAMVLAIGLVVDDAIVVIENVEHHMESGLS 425

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAI 504
              + +   +     +           V + F GG      + FA+T+ +++ +S F A+
Sbjct: 426 PVDATERAMAEVQGPVVAIAFVLAAVFVPVAFLGGMMGVLYKQFALTIAIAMALSAFVAL 485

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           ++  A+   +         + N               F R R   VGI   F   +   +
Sbjct: 486 TLTPALCAMM----LKPKKESNSGGVLDRFFAWFNRVFDRTRKGYVGIVSRFIRKARIAV 541

Query: 565 FTHGLNYGI 573
               +  G+
Sbjct: 542 VFLLIVCGL 550



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 60/143 (41%), Gaps = 6/143 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  +  + + +  T G F L     N   + A++  IG  V+D +VV + +    
Sbjct: 361 SWRATIIPLLAVPVSLIGTFGTFVLLDFSINTLTLFAMVLAIGLVVDDAIVVIENV---E 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGI 805
               + +S  D  ++++ E  G  V  +       +P+A  GG   V+   FA+ +A  +
Sbjct: 418 HHMESGLSPVDATERAMAEVQGPVVAIAFVLAAVFVPVAFLGGMMGVLYKQFALTIAIAM 477

Query: 806 VVAASSSIFIAAPILLFIYDWRA 828
            ++A  ++ +   +   +   + 
Sbjct: 478 ALSAFVALTLTPALCAMMLKPKK 500


>gi|241518385|ref|YP_002979013.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240862798|gb|ACS60462.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 1022

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 84/668 (12%), Positives = 197/668 (29%), Gaps = 42/668 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEV 60
           RN    ++L+ ++   GL         +  +  FP   +P   IS  LD    S L    
Sbjct: 9   RNPVPPILLFILLTACGLWA-----FNRLDIQNFPDMDLPTIEISASLDGAAASQL---- 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                    +    ++  + L K      ++      I+++F   +  +   D+V   + 
Sbjct: 60  ------ETEVARKIEDELTGLTKLDSVTTTITDGSVSISVAFEVGKDTQEALDEVKSAVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  +     +   +     ++      D++   + E S  I       +   +  
Sbjct: 114 QAQDELPEEMNAPTVTKQSLNSSPLITYVVRSDKL--DSAELSWFIDNDMSRALMAVDGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      +  ++  E + + L  L  T   ++       +   G    +     S    
Sbjct: 172 GEVGRLGGVDREIRVELNANLLDGLGLTVNDVNSQVEAVQSDLSGGKGRIGGESQSVRTL 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+   ++  + +                                   +    + +   
Sbjct: 232 AAVKSAEQLGAMAIPLPE--------------------GSWVGLDELGTVTDSHSDLTSL 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L    +  A        S     +       +  A    + +       +     +  
Sbjct: 272 AYLNGKPVIAAQIKRSKGYSDTAVTDKVRDAMKVFAAAHPEVTIEE-AYNTIVPTEQNYE 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A + + V+++ +   +  L+A  ++ L++I T  ++ +LG +L   ++  I
Sbjct: 331 SSMHMVYEGALIAVFVVWLFLRDWRATLLAAVALPLSIIPTFLVMYMLGYSLNTITLLAI 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+  E I       ++ F +           +  +  T +   +   F 
Sbjct: 391 SLVVGILVDDAIVEIENIERHLNMGKNPFDAAMEAADEIGMAVIATTFTLVAVFLPTAFM 450

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F IT  +++L S+  A  +   M  ++++       +   + R +L    
Sbjct: 451 GGIPGIIFKQFGITASVAVLTSLLVARLVTPMMAAYMMKASGKAHEEDGRIMRCYLWLVK 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
            A++            + F+   +  L T       D +  + L       ++ +   + 
Sbjct: 511 GALRRRWIPILATVGFLAFTALLLSHLSTGFFPASDDGQTQVSLTTPYGSTIEATDEAAR 570

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
             S  I  +       +           G S A T    +V                E  
Sbjct: 571 KASAIIAGVDHVTSVFQATGTASTGGMNGTSNASTNSATLVVNLTPIDDRDVKQSQIEAD 630

Query: 658 GPKISREL 665
             K   +L
Sbjct: 631 LRKALEQL 638



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 77/256 (30%), Gaps = 6/256 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + + +     V L  + +  +S                     + +     A T  + 
Sbjct: 241 GAMAIPLPEGSWVGLDELGTVTDSHSDLTSLAYLNGKPVIAAQIKRSKGYSDTAVTDKVR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
              K      P  TI+          +       +    + IA+ +       W   L A
Sbjct: 301 DAMKVFAAAHPEVTIEEAYNTIVPTEQNYESSMHMVYEGALIAVFVVWLFLRDWRATLLA 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L I  T     + G   N   + A+  ++G  V+D +V  + +    +      +
Sbjct: 361 AVALPLSIIPTFLVMYMLGYSLNTITLLAISLVVGILVDDAIVEIENI---ERHLNMGKN 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
             D   ++ +E     + T+       LP A  GG        F I  +  ++ +   + 
Sbjct: 418 PFDAAMEAADEIGMAVIATTFTLVAVFLPTAFMGGIPGIIFKQFGITASVAVLTSLLVAR 477

Query: 814 FIAAPILLFIYDWRAK 829
            +   +  ++     K
Sbjct: 478 LVTPMMAAYMMKASGK 493



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 62/169 (36%), Gaps = 8/169 (4%)

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL 720
              EL       + I    +   + + F  +   +  +  L L +   L    L G  F++
Sbjct: 839  QSELFTSFGTSMAIGIFCIYAVLVLLFHDFLQPVTILMALPLALGGALLPLVLTGTSFSM 898

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA- 779
             AV  +L L+G    + +++ +   +  +     +S  D +  + ++     + T++A  
Sbjct: 899  PAVIGLLLLMGIVSKNSILLVEYAIEARRA---GMSRYDALVDACHKRARPIIMTTIAMA 955

Query: 780  --FISVLPMAVWGGSVIG-SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               +      V G         I +  G++ +   S+ +   +  F+ D
Sbjct: 956  GGMLPAALSLVSGDPSFRQPMGIVVIGGLITSTFLSLLVIPVVFTFLDD 1004



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/439 (10%), Positives = 128/439 (29%), Gaps = 32/439 (7%)

Query: 88   VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
              +       + ++      ++    ++   L+    +L     +     +      + L
Sbjct: 600  TSNASTNSATLVVNLTPIDDRDVKQSQIEADLRKALEQLPGVRLEIG---SGGNGTQLTL 656

Query: 148  SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
            +    +  +      ++E   + +  IG   S+           ++  + D +    L  
Sbjct: 657  TLAGDNSELLEKAAANLEADLRTLSGIGNVTSSAAMQ-----TPEVTIKPDLAEAASLGV 711

Query: 208  TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
            T+  ++    +              L +                        +   +   
Sbjct: 712  TSKAIAEAIRVATAGAYDTALSKLNLPERQ---------------VAIRVMLDTANRQSL 756

Query: 268  PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
              + +   E            +I    +     R+  +  ++        +   + T E 
Sbjct: 757  DAISLIPVEGKEGNVALGAIADISLGSSPSQIDRLDRSRNVS-LTVELNGRNLSDVTAEA 815

Query: 328  AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
            A + +       +        +R              + AI    +  VL ++       
Sbjct: 816  ARLPSYQNLPQGVKFVEQGELKRQSELFTSF----GTSMAIGIFCIYAVLVLLFHDFLQP 871

Query: 388  LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            +    ++ L +   L  L L G + ++P++ G++L +G+   ++IL+ E   E  R   S
Sbjct: 872  VTILMALPLALGGALLPLVLTGTSFSMPAVIGLLLLMGIVSKNSILLVEYAIEARRAGMS 931

Query: 448  VFCS-LDMGFSRAYSTIF---DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             + + +D    RA   I          L A + L        +   I +   ++ S F +
Sbjct: 932  RYDALVDACHKRARPIIMTTIAMAGGMLPAALSLVSGDPSFRQPMGIVVIGGLITSTFLS 991

Query: 504  ISIVRAMMIFIIRYKKMKS 522
            + ++  +  F+        
Sbjct: 992  LLVIPVVFTFLDDVLNWLK 1010


>gi|330892056|gb|EGH24717.1| acriflavin resistance protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 1022

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 79/597 (13%), Positives = 184/597 (30%), Gaps = 43/597 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEV 60
           RN    V+++ ++   G++        +  +  FP   +P  +I+            LE 
Sbjct: 9   RNPVPSVLVFILLAAFGVI-----GFSKLHVQDFPDMDLPSVQIN----------ATLEG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    ++  + L        ++   +  I ++F   +  E   ++V   + 
Sbjct: 54  AAPTQLETEVARKIEDKLTSLTLLDHITTTITDGRVSIVVTFDIDKDSEVAVNEVRNAVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L        +   T     ++      DQ+     + S  +       +   +  
Sbjct: 114 SARTDLPASMNAPTVSKQTAAAAPLLTYTVESDQL--DEQDLSWLVDNNIAKALLFVKGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   +  +   + DP  +  L  T++ +S           G    +   R S    
Sbjct: 172 SFVTRVGGVDREAIVDLDPVLMAGLGVTSSDVSSRIKEVQKESSGGQGDIGGQRQSARMI 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             VE   EI+GI +                         R        +I    A     
Sbjct: 232 ATVESVHEIAGISI--------------------PLADGRWVRLDQIAHIHDAHADRSTY 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +     + +++   + T+  A   A +  + +      +     V   L +  
Sbjct: 272 AFRNGKSVVGFEVT-RSRGFSDVTVAKAVRAALVEFSIAHSQSRIVEATNTVEPVLDNYK 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A    L ++V++  +   +  L+A  ++ L+V+ T A + L G +L L ++  +
Sbjct: 331 GSMMLLAEGMLLAVLVVWWFLRDWRATLIASVALPLSVLPTFAYMWLAGYSLNLVTLLSL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+  E I       +S + +           +  + +T +   +   F 
Sbjct: 391 ALVVGILVDDAIVEIENIERHLLMGKSPYQAAMEAADEIGLAVIATTLTLVAVFLPTAFM 450

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIF-IIRYKKMKSIDINPLSRFFLIPD 536
               G   R F IT  +++L S+  A  +   M  + +       +  ++  +       
Sbjct: 451 SGIAGQFFRQFGITASVAVLASLLVARLLTPMMAAYMLQPRSMHDAEKLSDGTLMIRYLY 510

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            +     R +   +  +  F    + L +          K    + +   +   L  
Sbjct: 511 LVNTAMRRRKSTVLIATTFFLFSLLLLPYISTAFIPSQDKSQSMVTLQLAQGATLED 567



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 9/216 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               +V  +       +   V + V+  + E     +          +   L       +
Sbjct: 275 NGKSVVGFEVTRSRGFSDVTVAKAVRAALVEFSIAHSQSRIVEATNTVEPVLDNYKGSMM 334

Query: 674 IIS---AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           +++    +A+L+  W    W   L A   L L +  T  +  L G   NL  + ++  ++
Sbjct: 335 LLAEGMLLAVLVVWWFLRDWRATLIASVALPLSVLPTFAYMWLAGYSLNLVTLLSLALVV 394

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V  + +    +      S      ++ +E     + T++      LP A   
Sbjct: 395 GILVDDAIVEIENI---ERHLLMGKSPYQAAMEAADEIGLAVIATTLTLVAVFLPTAFMS 451

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              G     F I  +  ++ +   +  +   +  ++
Sbjct: 452 GIAGQFFRQFGITASVAVLASLLVARLLTPMMAAYM 487



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 71/203 (34%), Gaps = 7/203 (3%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                       + +A   V   V          + +   +    +   EL     + + 
Sbjct: 796 DRSRNVTLSVELNGLAIGDVQREVMALEVMKRLPAGVFRVDQGELQHMAELFESFALALA 855

Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I    +   + + F  +   +  ++ L L +   L    + G  F+++ V  VL L+G  
Sbjct: 856 IGVFCIYAVLVLLFHDFMQPVTILSALPLAMGGALFALWMAGQSFSMSVVIGVLMLMGIV 915

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGS 792
             + +++ +     +      +S  + +  + ++     V T++A    ++P A+  G  
Sbjct: 916 TKNSILLVE---YAVVSRRKGLSRLEALRDACHKRARPIVMTTIAMGAGMMPNALGIGAE 972

Query: 793 V--IGSFAIPMAFGIVVAASSSI 813
                  AI +  G++ +   S+
Sbjct: 973 PSFRQPMAIVVIGGLLTSTILSL 995


>gi|27380191|ref|NP_771720.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
 gi|27353345|dbj|BAC50345.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
          Length = 1057

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 71/565 (12%), Positives = 156/565 (27%), Gaps = 41/565 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +    G +           + ++P  +P               + +    
Sbjct: 9   RPRLAIVIAIVTTIAGAIS-----FVAMPVAQYPDIVPP-------------QVSVTTQY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       + + +     +         +    +T SF      +     +  
Sbjct: 51  PGASGAIVDATVAQPIEAQVVGVDKMIYMKSTSGDDGSYTLTASFELGSNPDINTVNINN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + +K  +    +    + +      +     +  S       +DQI  +
Sbjct: 111 RVQTALSSLPSEVQKQGISVKKKSTAILAVVTLYSPKHTHDPLFLSNYATINLLDQIKST 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +       RL  L  TTA +       N        G R + +  
Sbjct: 171 NGVGDAYLFAPQDYAMRAWVKTDRLTGLDLTTADIINAVQSQNVQAAVGRIGARPIFNDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  ++ K  ++                     +                 +    A +
Sbjct: 231 QLQLNLQTKGRLA-------------SVSDFENIVVRTNPDGSVLRLRDVAQVELGAANL 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +       +   T+       A L           V          
Sbjct: 278 DRDTRFNGQNAAAIVVYQTPGGNAIDTVAAVRKKLAELEKRFPEDLSWKVTYDPTIFVTD 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +    K T      LV+IV+F+ +   +  L+   ++ +++I     L+ +G +    S+
Sbjct: 338 TLHEVKKTLVEAFILVVIVVFLFLGSVRATLIPTLAVPVSLIGAFIALNAVGYSANTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATV 475
             IVL IG+ VD  I+V E +     +    S   +         + I    +  L   V
Sbjct: 398 LAIVLAIGIVVDDAIVVVENVERVMEERPELSPADATKQAMREITAPIIAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G +    R FA+T+ +S+L+S   A+++  A+    +R        +   +   
Sbjct: 458 PIAFIPGISGELFRQFAVTVAVSMLLSAINALTLSPALCAVFLRPHHGPRRGLIGWTMRT 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFS 557
           +         + AR     I  +  
Sbjct: 518 IDRVRDGYGAIVARLVHFSIVGIAM 542



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 74/219 (33%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              +R     G   +     + +K                       +E   +G  G+I+ 
Sbjct: 817  NNLRAVTIQGTPASGVSSGQALKVFEDVAARTLPQGYAGEWTDTAFQEKRAEGKTGIILG 876

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +  + ++ + +  +     L G+  +L     ++ LIG +
Sbjct: 877  FAVLFAYLFLVALYESWTIPVPVLLSVTIAVLGSFSAILLSGLTLDLYGQIGMVVLIGLA 936

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +  ++        I   +   +         + TS A  + + P+ V  G+ 
Sbjct: 937  AKNGILIVEFAKE---KREHGIPLLEAAAEGARLRFRPVMMTSFAFILGLYPLVVASGAS 993

Query: 794  ---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                     P+  G+++A+   IF   P+ +     R +
Sbjct: 994  ELARRGVGTPVFGGMILASFVGIFAIPPLYVMFQAIRER 1032



 Score = 45.5 bits (105), Expect = 0.043,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 75/202 (37%), Gaps = 13/202 (6%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
                 A  + L  ++K+  E +      +  I       E+ +  +   I+  I + ++
Sbjct: 301 AIDTVAAVRKKLAELEKRFPEDLSWKVTYDPTIFVTDTLHEVKKTLVEAFILVVIVVFLF 360

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +         L     + + +          G   N  ++ A++  IG  V+D +VV + 
Sbjct: 361 LG---SVRATLIPTLAVPVSLIGAFIALNAVGYSANTVSLLAIVLAIGIVVDDAIVVVEN 417

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM----AVWG--GSVIGSF 797
           + + +      +S  D   +++ E     +       + +        + G  G +   F
Sbjct: 418 V-ERVMEERPELSPADATKQAMREITAPII---AITLVLLSVFVPIAFIPGISGELFRQF 473

Query: 798 AIPMAFGIVVAASSSIFIAAPI 819
           A+ +A  ++++A +++ ++  +
Sbjct: 474 AVTVAVSMLLSAINALTLSPAL 495


>gi|23011929|ref|ZP_00052146.1| COG0841: Cation/multidrug efflux pump [Magnetospirillum
           magnetotacticum MS-1]
          Length = 723

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 62/517 (11%), Positives = 138/517 (26%), Gaps = 33/517 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   +   I  +G             + ++P   P                      
Sbjct: 8   RPIFAWAVSIFIMLVGATSIAF-----LPVSQYPDVAPVTIQ---------VTATYPGSP 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + +        +       +I  SFA           V   ++ 
Sbjct: 54  PERLYDGVTRIIEEELNGIPGLMYFESTSDTSGMAQIMASFAPGSDPSKSTVAVQNRIKR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L     +  ++        +     +         +      R+ + ++       
Sbjct: 114 IEARLPRAVTQQGVIVEEASTSFLQFVIVSSKDGALSETDLGDLAARRILGELRRVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP +L     T   ++      N      + G +  ++      
Sbjct: 174 RATLFSS-EKALRIWIDPVKLVGFSMTPGDVTAAVGAQNAQVASGIVGAQPAKEGQRIAA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  K +++                +    +                 +           
Sbjct: 233 NVLVKGQLT-------------TVAEFEEIVLRANPDGSLVRLRDVAEVELGGQSYTMQT 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +            A L+          V          S   
Sbjct: 280 RLDGRPAAGIGIQLAPGGNALAAATGVKAKIAQLQRTLPANVSVTVPYHTTPFVEVSIKK 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV  V+F+ +   ++ ++    + + ++ T   L + G ++ + ++ G+V
Sbjct: 340 VLMTLAEAMALVFAVMFLFLQNFRYTIIPTIVVPVALLGTCGALLVAGFSINVLTMFGMV 399

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +      +      +      +    I       +   V L FF
Sbjct: 400 LAIGILVDDAIVVVENVERIMAEEGLPPREATAKAMGQITGAIVGITSVLVAVFVPLAFF 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G      R FA++M  SI  S F A+S+  A+   +
Sbjct: 460 PGSVGVIYRQFAVSMATSIAFSAFLALSLTPALCATL 496



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 88/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       Q   +  +        +       G+++A    ++    ++   +P 
Sbjct: 260 VRLRDVAEVELGGQSYTMQTRLDGRPAAGIGIQLAPGGNALAAATGVKAKIAQLQRTLPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +                I+K ++ +  +   +   +++  + + + +     + + +  T
Sbjct: 320 NVSVTVPYHTTPFVEVSIKKVLMTLAEAMALVFAVMFLFLQNFRYTIIPTIVVPVALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G   + G   N+  +  ++  IG  V+D +VV + +     +    +  R+   K++ +
Sbjct: 380 CGALLVAGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMAEEGLPPREATAKAMGQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  +       +P+A + GSV      FA+ MA  I  +A  ++ +   +   + 
Sbjct: 438 ITGAIVGITSVLVAVFVPLAFFPGSVGVIYRQFAVSMATSIAFSAFLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498


>gi|116748209|ref|YP_844896.1| acriflavin resistance protein [Syntrophobacter fumaroxidans MPOB]
 gi|116697273|gb|ABK16461.1| acriflavin resistance protein [Syntrophobacter fumaroxidans MPOB]
          Length = 1039

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 61/516 (11%), Positives = 160/516 (31%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   +  +G+            +D +P                    V E  
Sbjct: 9   RRPVFATVMMLALVILGIFS-----YRHLNIDMYPDVEIPVLT---------ITTVYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E  + ++       + ++  + I + F       + A +    +  
Sbjct: 55  PPESVEREITRRIEEAVNPIQGVKHISSTSQEGISSIVIEFTLETRINDAAQEARAKVSA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +  ++++         +V     +   +  A   +  + ++   +I       
Sbjct: 115 IRGDLPKESDESVIQKLDFSAAPVV--SLAVRSAVLDAKALTTLVDKRVKRRIENVAGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++    DP+RL  L     ++       N                  N+ 
Sbjct: 173 RVDLVGDSKREVNVWLDPTRLEALGLGVNEVISGLGHENVDTPLGRL----------NRE 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            VE  V +SG     +         +            R         +   +       
Sbjct: 223 GVEMPVRVSGKPAEVSGYPDMVVAWR----------DGRPIRLKEIARVRDGVEEPRSLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++            ++  +     +    +  +L           V   +      S   
Sbjct: 273 LVDGVPSVALDVLKQSGANTVAVADGVKRIVGVLAPELPQGVEIQVVRDSSKFIRDSVED 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   L ++++F  +   +  ++   ++ ++VI +  +++ LG TL + ++ G+ 
Sbjct: 333 VETTILLGGLLTILIVFCFLNSWRSTVITGLTLPISVISSFIVMNALGFTLNVLTLMGLS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I    ++ +    +   G +     +  +  T +   V + F  
Sbjct: 393 LAIGLLIDDAIVVRENIVRHLQQGKDHVRASLEGTAEIGLAVMATTFTIVAVFVPVAFMR 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G     F IT+  ++L+S+F + ++   +    
Sbjct: 453 GIVGKFFYQFGITVTFAVLLSLFVSFTLDPMLSSRW 488



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/210 (12%), Positives = 80/210 (38%), Gaps = 14/210 (6%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              ++ ++ K+  +        +     +   E  +     + ++ I + + +  +F+ + 
Sbjct: 825  DAIDAIRNKVEAVGLPPGYVISWSGEAEDMAETFQYIFEALALAVILIYLILAAQFESFI 884

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + +L L +   +          N+ ++  ++ L+G    + +++ D  R    L 
Sbjct: 885  APLSIMISLPLSLVGVVVILFFTNDTLNIMSLIGLIMLMGLVTKNAILLVDYSR---VLR 941

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
             T +  R  + ++    L   + T++A    +LP+A+    G  +    A  +  G++ +
Sbjct: 942  KTGMDRRTSLIEAGRTRLRPIIMTTLAMIFGMLPLALALGPGAEMRAPMARAVIGGLITS 1001

Query: 809  ASSSIFIAAP-------ILLFIYDWRAKNA 831
               ++ +          ++L +     + A
Sbjct: 1002 TLLTLILVPVVYTVLDDVMLALGRRFRRKA 1031



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 47/135 (34%), Gaps = 8/135 (5%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +    TL + +  +       G   N+  +  +   IG  ++D +VV    R+N+
Sbjct: 354 SWRSTVITGLTLPISVISSFIVMNALGFTLNVLTLMGLSLAIGLLIDDAIVV----RENI 409

Query: 749 -KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
            +             +   E     + T+       +P+A   G V      F I + F 
Sbjct: 410 VRHLQQGKDHVRASLEGTAEIGLAVMATTFTIVAVFVPVAFMRGIVGKFFYQFGITVTFA 469

Query: 805 IVVAASSSIFIAAPI 819
           ++++   S  +   +
Sbjct: 470 VLLSLFVSFTLDPML 484


>gi|254563215|ref|YP_003070310.1| Multidrug resistance protein mexB [Methylobacterium extorquens DM4]
 gi|254270493|emb|CAX26496.1| putative Multidrug resistance protein mexB (Multidrug-efflux
           transporter mexB) [Methylobacterium extorquens DM4]
          Length = 1054

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 63/544 (11%), Positives = 148/544 (27%), Gaps = 40/544 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  IG++  L        + ++P   P               + ++   
Sbjct: 8   RPILAGVISVIITVIGIVAGL-----TLPVAQYPEIAPPI-------------INVQATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                    +  +  L   +        I   S       I  +FA     +  A +V  
Sbjct: 50  PGASAQQAYESIAIPLEQEINGAPNLIYIQSTSSTDGSVSIDATFAVGSNLDAAAAEVLT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGI 176
                 +KL    +   L         +       D       +  +     Q I  +  
Sbjct: 110 RSSRAEAKLPEAVRAQGLEIQKSSRQRLGNVVLYADPSTGFDELFLANYAETQVIKPLRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                + +    +   +    DP+++  L  +T  +       N        G   +  +
Sbjct: 170 VTGMGRIVNFSNMRYAMRIWLDPAKMEALALSTETVLQSIQAQNAQITTGSLGKLPMDRA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +  +  K  ++             +  +    +                 +      
Sbjct: 230 TPFELQLVTKGRLT-------------RPEEFGNIVLRANPDGSVVRVSDVGRVELGSEQ 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +    +       A L     P     +   +     
Sbjct: 277 YGVTSNFDGKPSATLGIFQNPDANAVEVMNGTRATMADLAERFPPGLHYSIALDSTEFVK 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      +V +V ++ +   +  L+   ++ + +I T   ++LLG +    S
Sbjct: 337 EAIYEVVRTLFEAILIVTVVTYLFLQNWRATLIPTIAVPIALIGTFGPMALLGFSFNTLS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL +GL VD  I+V E       +  +   +     +     +  + +      V 
Sbjct: 397 LLGLVLAVGLVVDDAIIVVENTERLMAEGMAPKPASREAVNEIGGPVIATTLVLAALFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G     FA+T+ +S+LIS   ++++  A+   +++             R  L
Sbjct: 457 VAFIPGLTGQLYNQFALTIAISVLISALVSLTLTPALCGLLLKPHAKDGPRKTRRWRKPL 516

Query: 534 IPDC 537
               
Sbjct: 517 EWFN 520



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 95/248 (38%), Gaps = 9/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +S V       +   ++          L   Q    ++V            + E  P 
Sbjct: 262 VRVSDVGRVELGSEQYGVTSNFDGKPSATLGIFQNPDANAVEVMNGTRATMADLAERFPP 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +  +   +  +E I + +  +  + + + +  ++  + W   L     + + +  T
Sbjct: 322 GLHYSIALDSTEFVKEAIYEVVRTLFEAILIVTVVTYLFLQNWRATLIPTIAVPIALIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSIN 766
            G  AL G  FN  ++  ++  +G  V+D ++V     +N  +L    ++ +    +++N
Sbjct: 382 FGPMALLGFSFNTLSLLGLVLAVGLVVDDAIIVV----ENTERLMAEGMAPKPASREAVN 437

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E  G  + T++      +P+A   G        FA+ +A  ++++A  S+ +   +   +
Sbjct: 438 EIGGPVIATTLVLAALFVPVAFIPGLTGQLYNQFALTIAISVLISALVSLTLTPALCGLL 497

Query: 824 YDWRAKNA 831
               AK+ 
Sbjct: 498 LKPHAKDG 505



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              +   +    +  ++  +++     L  +    L I   +GF AL G+  ++     +L
Sbjct: 872  APLIFGLGVFMIFCFLAGQYESLRMPLVILLATPLAIFGAVGFLALRGMPLDVFGQIGLL 931

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G +  + +++     ++++         +    +    +   + TS A  +  +P+A
Sbjct: 932  LLVGLAAKNAILLVS-FAEDLR--RQGKDALEAAQHATRMRMRPILMTSFAFILGSVPLA 988

Query: 788  VWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  G+  G   S    +  G++VA   ++F+     +     R
Sbjct: 989  IASGAGAGARLSMGTVVIGGLLVATILTLFVTPVFYVAAERLR 1031


>gi|281355508|ref|ZP_06242002.1| acriflavin resistance protein [Victivallis vadensis ATCC BAA-548]
 gi|281318388|gb|EFB02408.1| acriflavin resistance protein [Victivallis vadensis ATCC BAA-548]
          Length = 1037

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 73/548 (13%), Positives = 160/548 (29%), Gaps = 43/548 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL--VLE 59
           +   ++ ++  ++  +G +      L    +D  P                G  +    E
Sbjct: 9   KRPIFISMISCIVLILGGVA-----LSYLPVDLMPDITYP-----------GVTIITTYE 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + V   +    +   S +        +  +  + +T+SF      E+    V   L
Sbjct: 53  DASPEEVEELISKRIERSLSAVSGVKEITSTSGEGSSNVTVSFNWGTDLESAVADVRDRL 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V   L  D  + +L         I+      +  +  A +    +  Q   ++     
Sbjct: 113 DRVVPSLPDDADRPILYKFDSASSPILRIGVATNIDLMDARQL---VEDQIQYRLERING 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                 +  ++ ++    D  + R+L  +   +       N +          L      
Sbjct: 170 VASAEINGGLVREIQVLFDVDKARKLDTSLENVLSKLKEANVTTPAGNLREDRLEIRVRT 229

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             +  D                     +    +                 +      +  
Sbjct: 230 PGIFTD-------------------IDQIRNTVIATGKNGELIKVGDVAEVVDTHEKLTR 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +            ++  +              +                      + 
Sbjct: 271 YVRVNGKPGIMMQVYKQSGSNTVQVANGVLKEMERVNEEFGSQVQLQAIINTADFIERAI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    +      L ++VL   +      +V   SI +++I T AL+   G TL L ++ G
Sbjct: 331 SGVADSAFSGGLLAVVVLLFFLRNIGSTIVISISIPMSIIATFALVYFCGYTLNLMTLGG 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + LG+G+ VD++I+V E I     +      +   G S   + +  S +T L   + L F
Sbjct: 391 LALGVGMLVDNSIVVLENITRLRDEGMHPHEAAVKGTSEVVAALTASTLTTLAVFLPLLF 450

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G      + F+  +  S+  S+FTAI++V  M   ++R     +   +   R   IP+
Sbjct: 451 MEGMAGVMFKQFSAVVSFSLGCSLFTAITLVPMMASRLLRPVAPPAGKPSLWHRIMEIPE 510

Query: 537 CIAIQFMR 544
                 + 
Sbjct: 511 YFLRWLVG 518



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 77/221 (34%), Gaps = 6/221 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V              V++ ++ K+ +I              +  +E  R+ +    
Sbjct: 811  NQERVLTVGGNIQDRDLGSVVQDIQAKLEDIPMPPGFTLLFSGDYEDQQESFRELMFAFS 870

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++   + + +  +F+     L  + ++ L     +    L    FNL +   V+ L G  
Sbjct: 871  LALALVYMVMACQFESLRDPLVVMFSVPLAAIGVVLALFLTRTTFNLQSFIGVIMLAGIV 930

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +++ D    N+      +     + ++    L   + T++   + + P+A+    G
Sbjct: 931  VNNAILLVDTA--NLLRNEEGMPLEKAVREAGKRRLRPILMTTLTTVLGLFPLALGLGDG 988

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G      A  +  G+  +   ++F    + L      +K  
Sbjct: 989  GETQAPMARAVIGGLTSSTVITLFFVPAVYLVAETLCSKKK 1029



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 83/281 (29%), Gaps = 10/281 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + +   V             +         D        +   +  +L  V    E +  
Sbjct: 205 KLKEANVTTPAGNLREDRLEIRVRTPGIFTDIDQIRNTVIATGKNGELIKVGDVAEVVDT 264

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            +   +         + +Q          +V   V K++  +      Q         + 
Sbjct: 265 HEKLTRYVRVNGKPGIMMQVYKQSGSNTVQVANGVLKEMERVNEEFGSQVQLQAIINTAD 324

Query: 664 ELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            + R              +A+++ ++        +    ++ + I  T       G   N
Sbjct: 325 FIERAISGVADSAFSGGLLAVVVLLFFLRNIGSTIVISISIPMSIIATFALVYFCGYTLN 384

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +  +   +G  V++ +VV + +    +L    +   +   K  +E +     +++  
Sbjct: 385 LMTLGGLALGVGMLVDNSIVVLENI---TRLRDEGMHPHEAAVKGTSEVVAALTASTLTT 441

Query: 780 FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
               LP+       G +   F+  ++F +  +  ++I +  
Sbjct: 442 LAVFLPLLFMEGMAGVMFKQFSAVVSFSLGCSLFTAITLVP 482


>gi|182678153|ref|YP_001832299.1| acriflavin resistance protein [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182634036|gb|ACB94810.1| acriflavin resistance protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 1038

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 63/563 (11%), Positives = 149/563 (26%), Gaps = 31/563 (5%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    +     +        S     + I++ F  SR  +  A  +   + 
Sbjct: 54  ASPETMASSVTQPLERQFGQIPGVTQMTSSSTLGYSTISVQFDLSRNIDGAAQDIQTAIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + +L             +   + ++    +                     I      
Sbjct: 114 AASGQLPKQLPTPPTYKKVDPADAPIIV-LAVTSDAMPLTVVDDYAENILAQNISRFPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S +    +  + DP+++  L  +   +    +                       
Sbjct: 173 SMVEISGQQKPAVRIQVDPAKVAALGLSLEDLRLSILN--------------------AT 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                             AN      +P  D                             
Sbjct: 213 ANSPKGSIDGATRTYTIYANDQELKAEPWNDFIIAYRNGAPVRIRDIGRAIDASENTKMA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +   T+++       L+A   P     +          S  
Sbjct: 273 AWANGKPAILLPIMKQPGTNVIDTVDSIKAALPRLQAAIPPTIKVAILSDRTQTIRASVD 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  +  GLV+ V+F+ +      ++   ++ L ++ T AL+ ++G +L   S+ G+
Sbjct: 333 DVQFTLVLTIGLVVAVIFVFLRNFWSTIIPGVAVPLALVGTFALMYVMGYSLDNLSLMGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G  VD  I++ E I        +   +   G +    TI   +++ +   + L   
Sbjct: 393 TIAVGFVVDDAIVMLENIHRHIEDGMTPMQAAIKGSAEIGFTIISISLSLVAVFIPLLLM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FAIT+ ++I +S   ++++   M    +R +         ++   +    
Sbjct: 453 GGIVGRLFREFAITVTMTIFVSALVSLTLTPMMCSRFLRSEHGVRHGRLYMASERIFDLM 512

Query: 538 IA-------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
           +A       I     R                 +      +     G I      ++ V 
Sbjct: 513 LAGYRKTLDIALRHHRITFAIFLATLVATFYLFIIIPKGFFPQQDTGIIIATSETSQDVS 572

Query: 591 LSVVRSNLESLQIGDISFQNFDG 613
            + +      L    +       
Sbjct: 573 FAEMIRRESRLAEIVMKDPAVAS 595



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 79/232 (34%), Gaps = 12/232 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R    ++   + +           + L             ++ +K  +  +        
Sbjct: 256 IRDIGRAIDASENTKMAAWANGKPAILLPIMKQPGTNVIDTVDSIKAALPRLQAAIPPTI 315

Query: 654 TEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
              +    ++ +          + + I  +  +I++++R  W   +     + L +  T 
Sbjct: 316 KVAILSDRTQTIRASVDDVQFTLVLTIGLVVAVIFVFLRNFWS-TIIPGVAVPLALVGTF 374

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               + G   +  ++  +   +G+ V+D +V+ + +    +     ++      K   E 
Sbjct: 375 ALMYVMGYSLDNLSLMGLTIAVGFVVDDAIVMLENIH---RHIEDGMTPMQAAIKGSAEI 431

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
               +  S++     +P+ + GG V      FAI +   I V+A  S+ +  
Sbjct: 432 GFTIISISLSLVAVFIPLLLMGGIVGRLFREFAITVTMTIFVSALVSLTLTP 483



 Score = 44.7 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 79/199 (39%), Gaps = 6/199 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
            +    +     ++   +++        +  +  +      V  + I + I + + ++ + 
Sbjct: 822  QATAAIHDAEMQLGAPASLTGNFQGNAQAFQASLASEPYLVTAAIIVIYIILGVLYESYI 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  ++TL       L    LFG +F+L A+  ++ LIG    + +++ D   +     
Sbjct: 882  HPLTILSTLPSAGLGALLTLILFGYDFSLIALIGIILLIGIVKKNGIMMVDFAIE--AER 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +   + I ++        + T+MAA +  +P+ +    G  +       M  G++V+
Sbjct: 940  NQGLPPLEAIREACLLRFRPIMMTTMAAVLGGIPLMIGTGTGSEIRQPLGYAMVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWR 827
             + +++    I L++   R
Sbjct: 1000 QALTLYTTPVIYLYLDRLR 1018


>gi|92116574|ref|YP_576303.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrobacter hamburgensis X14]
 gi|91799468|gb|ABE61843.1| Hydrophobe/amphiphile efflux-1 HAE1 [Nitrobacter hamburgensis X14]
          Length = 1048

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 82/679 (12%), Positives = 194/679 (28%), Gaps = 37/679 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GLL      L +  + + P  +P                V     
Sbjct: 9   RPRMAIVIAIVISLAGLLA-----LSRIPVAQLPDIVPPQVQ---------VSAVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +     + K      S     +  +T+SFA     +     V   +Q 
Sbjct: 55  ASVLEATVAQPIESKVVGVDKMIYMKSSSGADGSYNLTVSFALGADPDINTVNVNNRVQT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +   L    +    +       +      +  +   I   +D++  +    
Sbjct: 115 AMANLPTEVQAQGLTVQKQSSSLLQFIALYSEGGKLAPLFITNYAIINVMDELSRTPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     R    +    D SRL  L    + +       N        G R + +    Q 
Sbjct: 175 QATLFGREDYSMRIWFDTSRLTNLGLAPSDIIRAVQAQNVQAPIGRLGARPVPEDQQFQL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  ++                +    +                 I      +    
Sbjct: 235 NLQTQGRLT-------------TPEEFGAIVIRANPDGSVLQVKDVARIELGAQNLDTFS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +T       LR          V   +      + S 
Sbjct: 282 RLNGNPSVAIGIYLAPGANAITVAKTVNATLEKLRGRFPAGLQARVVYDSTVFVTDTISA 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV IV+F+ +   +  ++   +I ++++ +  +L  LG +    S+  +V
Sbjct: 342 VIHALIEAFVLVAIVVFLFLGNLRATIIPIIAIPVSLVGSFFVLLALGYSANTVSLLALV 401

Query: 422 LGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L +G+ VD  I+V E +        + S   +     ++  + I    +  L   V + F
Sbjct: 402 LAVGIVVDDAIVVVENVERVMEEEPDLSPADATKKAMAQVTAPIVGITLVLLSVFVPIAF 461

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R FA+T+  S+LIS   A+++  A+    +R+   + I          + D
Sbjct: 462 ISGISGELFRQFAVTISASVLISAVNALTLSPALCTVFLRHSPRRGIMGRIGWGIDKVRD 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID----FKGGIQLGVLANRPVDLS 592
             A    +     +   +L +   + +     +          +G   + V       ++
Sbjct: 522 GYATIVRKTLRLSIISMVLVAAFGLGIFGLMKVTPTGFLPEEDQGAFFINVQLPDGASVN 581

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                ++ ++    S          +         +     ++  +K          + Q
Sbjct: 582 RTSETVKQVENILKSMPQVQDTTAIIGYSLLDSYSASNNAFLIATLKPFEDRTKVADSAQ 641

Query: 653 NTEIVGPKISRELIRKGIV 671
                    ++++    ++
Sbjct: 642 ALIAHVFGAAQQIRTANVL 660



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/221 (9%), Positives = 77/221 (34%), Gaps = 7/221 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
             N+              +        +++                   +    + I+ + 
Sbjct: 815  NNYRSVTINGGPAPGVASGTALAAMAEVSAKTLPPGYAFEWTGTAYQEQAASGQTIIVLG 874

Query: 675  ISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ +   +++  +   W   +  + ++++ +   +G   +  +  +L A   ++ L+  +
Sbjct: 875  MALLFAFLFLVGLYESWVIPIPVLFSVVVGVVGAIGGVLIAHLTLDLYAQIGLVVLVALA 934

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGS 792
              + +++ +  ++        +                 + TS+A  + ++P+    G S
Sbjct: 935  AKNAILIVEFAKEQR---EQGLGLEQAAALGAEMRFRAVLMTSIAFILGLVPLVWATGAS 991

Query: 793  VI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             I   +   P+  G++ A+S  +F+   + +F    R + +
Sbjct: 992  QIARHAVGTPVFVGMIAASSIGLFLIPMLYVFWESIRERTS 1032



 Score = 42.8 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 41/385 (10%), Positives = 116/385 (30%), Gaps = 12/385 (3%)

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF---- 513
           +A         ++L+  + L+  GG     F     +  ++   +    V    +F    
Sbjct: 124 QAQGLTVQKQSSSLLQFIALYSEGGKLAPLFITNYAIINVMDELSRTPGVGQATLFGRED 183

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
                   +  +  L                    G   +          L         
Sbjct: 184 YSMRIWFDTSRLTNLGLAPSDIIRAVQAQNVQAPIGRLGARPVPEDQQFQLNLQTQGRLT 243

Query: 574 DFKGGIQLGVLAN---RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
             +    + + AN     + +  V       Q  D   +        +        +++ 
Sbjct: 244 TPEEFGAIVIRANPDGSVLQVKDVARIELGAQNLDTFSRLNGNPSVAIGIYLAPGANAIT 303

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
             + +    +K+    P                + I   I  +I + + + I +++    
Sbjct: 304 VAKTVNATLEKLRGRFPAGLQARVVYDSTVFVTDTISAVIHALIEAFVLVAIVVFLFLGN 363

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +  I  + + +  +       G   N  ++ A++  +G  V+D +VV + + + + 
Sbjct: 364 LRATIIPIIAIPVSLVGSFFVLLALGYSANTVSLLALVLAVGIVVDDAIVVVENV-ERVM 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                +S  D   K++ +     V  ++      +P+A      G +   FA+ ++  ++
Sbjct: 423 EEEPDLSPADATKKAMAQVTAPIVGITLVLLSVFVPIAFISGISGELFRQFAVTISASVL 482

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
           ++A +++ ++  +         +  
Sbjct: 483 ISAVNALTLSPALCTVFLRHSPRRG 507


>gi|309778793|ref|ZP_07673566.1| multidrug efflux pump BpeF [Ralstonia sp. 5_7_47FAA]
 gi|308922501|gb|EFP68125.1| multidrug efflux pump BpeF [Ralstonia sp. 5_7_47FAA]
          Length = 1068

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 57/484 (11%), Positives = 134/484 (27%), Gaps = 17/484 (3%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N   T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVENMLYMQSQANSDGNMTTTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + T        ++                   +    D++       
Sbjct: 116 ALPRLPDVVQRLGVTTIKSSPDLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLARISGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP+++ +   T  ++       N      + G          Q 
Sbjct: 176 QVQLFGSGDYSMRVWLDPNKVAERGLTANEVVKAIRDQNVQVAAGVIGGSPSVPGTDLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      I    +      
Sbjct: 236 SVNAQGRLKTEQ-------------EFGDIILKSSPDGAVTYLRDVARIELAASEYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L+          +          S   
Sbjct: 283 LLDNKQAVAIPIFQAPGSNALQISDDVRKTMAELKEDFPEGVDYRIVYDPTQFVRSSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T  L+ + G ++   S+ G+V
Sbjct: 343 VTHTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSIIGTFGLMLMFGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+V E +     +  S   +           I    +T +   V L F  
Sbjct: 403 LAIGIVVDDAIVVVENVERNIAEGLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMT 462

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+ +S +IS F ++++  A+   +++        +       L     
Sbjct: 463 GLTGQFYKQFALTISISTVISAFNSLTLSPALAALLLKSHDAPKDWLARAMDKGLGWIFR 522

Query: 539 AIQF 542
               
Sbjct: 523 PFNR 526



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 81/252 (32%), Gaps = 12/252 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A   V LS +    +      +   N     +             AQ  V  +  + + 
Sbjct: 801  TAGEMVPLSSLLRVSQGFGPDMVVRYNGYTAADINGGPAPGFSSGQAQAAVERIAHETLP 860

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
            + V                       +    I  + + + +  +++     L  I  + +
Sbjct: 861  KGVRF-----EWTDLTYQQILAGNSAVWIFPICVLLVFLVLAAQYESLTLPLAVILIVPM 915

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +   +    +   + N+     ++ L+G +  + +++ +  R+   L     +  +   
Sbjct: 916  SLFAAMLGVWVSHGDNNIFTQIGLVVLVGLACKNAILIVEFARE---LELQGRTIVEAAI 972

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + V+P+ V    G  +  +  + +  G++      +F+    
Sbjct: 973  EACRLRLRPILMTSIAFIMGVVPLVVSTGAGAEMRHAMGVAVFAGMLGVTLFGLFLTPVF 1032

Query: 820  LLFIYDWRAKNA 831
             + +    A+  
Sbjct: 1033 YVLLRTLAARRG 1044



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T G   +FG   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 371 PL---LAVPVSIIGTFGLMLMFGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIAE-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             +S R+   K++ E  G  +  ++      +P+A      G     FA+ ++   V++A
Sbjct: 426 -GLSPREATYKAMREVSGPIIAIALTLIAVFVPLAFMTGLTGQFYKQFALTISISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 FNS 487


>gi|77360317|ref|YP_339892.1| preprotein translocase subunit SecD [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76875228|emb|CAI86449.1| preprotein translocase subunit SecD [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 612

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 157/504 (31%), Positives = 259/504 (51%), Gaps = 33/504 (6%)

Query: 36  PSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG-IGVFSM 91
           PS +     + I LGLDL GG   VL+VD D  ++  L     + +S + K+   GV ++
Sbjct: 119 PSWLQSFGLSPIKLGLDLNGGVLFVLDVDLDKAIDEQLVSAYQQAKSIIIKQKAHGVKAL 178

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +     +  +  ++  K      V   LQ   + L V    N  V T +       S+  
Sbjct: 179 QTQTGFVINTLPNAGDK---LTPVIKELQSRFANLAVVTNNNGTVKTAQ----FSYSEQG 231

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
                   + Q++  +R RI+++GI+E+  QR G  RI I+LPG QDP+  ++++G TA 
Sbjct: 232 RSAFNKEVMSQTLTTLRSRIEELGITEAVTQRQGKQRIRIELPGVQDPTEAKRIIGATAS 291

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F+++           G +      G    ++     +G H+N A A       KP+V 
Sbjct: 292 LGFYQLKA--------VGGQTFNLQTGGTIKLDPVPIFTGEHINNAHA-GRDDWSKPLVQ 342

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPSGKAQI 319
           +S D  G       ++ NIGKP+A V       A                    S +  I
Sbjct: 343 LSLDSQGGDAMSAFSKANIGKPMATVYSEYSQNAKGEVVKKSEVINVANIAQHLSSRFSI 402

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +   + + A  LA +LRAGSL   + IV E+ +G  LGS++I  G  A++ G+ + + FM
Sbjct: 403 TNMQSPQAAADLALLLRAGSLSAPVTIVHEQTIGPSLGSENISNGLAALMLGMGITLAFM 462

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNERI 438
            + Y + GL+A+ ++ LN+   + L+SLL    LTLP IAG+VL IG+AVD+N+++ ERI
Sbjct: 463 AMWYRRLGLIANVALILNLTSLVGLMSLLPGVVLTLPGIAGLVLTIGMAVDTNVIIFERI 522

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
           +EE RK ++ + +++ G+ +A+STIFD+NIT +I  ++L+  G G V+GFAIT+ L ++ 
Sbjct: 523 KEERRKGRAPYQAIEQGYKQAFSTIFDANITTMITALILYGIGYGPVKGFAITLALGLVT 582

Query: 499 SMFTAISIVRAMMIFIIRYKKMKS 522
           SMFT + + + +   +      KS
Sbjct: 583 SMFTGVYVSKVLSQSLYLKLGKKS 606



 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 97/241 (40%), Gaps = 5/241 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    N +   +      N       L            Q      +  +   +    TI
Sbjct: 370 SEYSQNAKGEVVKKSEVINVANIAQHLSSRFSITNMQSPQAAADLALLLRAGSLSAPVTI 429

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            + + +GP +  E I  G+  +++     L ++ + ++    L A   LIL++T  +G  
Sbjct: 430 VHEQTIGPSLGSENISNGLAALMLGMGITLAFMAMWYR-RLGLIANVALILNLTSLVGLM 488

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           +L  G+   L  +A ++  IG +V+  V++++R+++  +      +    I++   +   
Sbjct: 489 SLLPGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERR---KGRAPYQAIEQGYKQAFS 545

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                ++   I+ L +   G   +  FAI +A G+V +  + ++++  +   +Y    K 
Sbjct: 546 TIFDANITTMITALILYGIGYGPVKGFAITLALGLVTSMFTGVYVSKVLSQSLYLKLGKK 605

Query: 831 A 831
           +
Sbjct: 606 S 606


>gi|312882718|ref|ZP_07742455.1| putative multidrug resistance protein [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369679|gb|EFP97194.1| putative multidrug resistance protein [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 1040

 Score =  161 bits (405), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 57/566 (10%), Positives = 155/566 (27%), Gaps = 42/566 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +     ++L  ++C  G +        +  +   P                   +    +
Sbjct: 9   KRPVAAIVLSLLLCVFGFVS-----FSKLPVREMPDIDNPV-----------VSITTRYD 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 +   +    +E  S +          R   ++IT++F         A  V   +
Sbjct: 53  GASATIIENQITSVLEEQLSGISGIDQISSVTRNGISRITINFELGYDLNTGASDVRDAV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 +     +  +        + +    +         + +  + R  +D+  +   
Sbjct: 113 ARAQRSIPDQADEPTVFKNNGSGEASLYINLSSSN--MDRTQLTDYVERVLLDRFSLISG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                 S  +   +  + DP ++     T + ++      N    G              
Sbjct: 171 VSAVNVSGGLYKVMYVKLDPIQMAGRNVTVSDITTALRKENIESPG-------------- 216

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 ++    I ++  T             +          +     ++         
Sbjct: 217 -----GQIRNDQIVMSVRTDRGYSSEKDFQSLVVKKTSDNSPIYLRDVADVYIGAKNEDS 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                  V        ++  +               +          ++  +      S 
Sbjct: 272 TFKSDGIVNVSMAIVPQSDANPLNVSNLVHKEVERAQKYLPQGSRLAIDYDSTVFIEHSI 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    T  I  GLV++VL++ +   +   +   ++ + +I         G ++ L ++  
Sbjct: 332 SEVYRTIFITGGLVVLVLYIFIGQTRATFIPAITVPVALISAFIAAYFFGFSVNLITLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +GL VD  I+V E I       +    +   G       +  + +  ++  + + F
Sbjct: 392 LVLSVGLVVDDAIVVVENIYHHIESGEKPLLAAFKGAREVGFAVIATTLVLVMVFLPISF 451

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G        F++ +  S+L S   A+++   +   +++     +     + R F    
Sbjct: 452 MDGMVGLLFTEFSVLLATSVLCSSLIALTLAPVLSSKLLKANVQPNRFNKLVDRLFAALS 511

Query: 537 CIAIQFMRARFWGVGISILFSICSIC 562
               + +         +  F +  I 
Sbjct: 512 RRYRELLSRCMGLRWGAPFFVLACIG 537



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 88/287 (30%), Gaps = 18/287 (6%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          +R   +           F  +  
Sbjct: 219 IRNDQIVMSVRTDRGYSSEKDFQSLVVKKTSDNSPIYLRDVADVYIGAKNEDSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V  +V K++          +   +    +  +          +
Sbjct: 279 VNVSMAIVPQSDANPLNVSNLVHKEVERAQKYLPQGSRLAIDYDSTVFIEHSISEVYRTI 338

Query: 672 GVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +    + +++YI+I   R  +  A+     LI            FG   NL  + A++ 
Sbjct: 339 FITGGLVVLVLYIFIGQTRATFIPAITVPVALISAFIAA----YFFGFSVNLITLMALVL 394

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  V+D +VV + +        +         K   E     + T++   +  LP++ 
Sbjct: 395 SVGLVVDDAIVVVENI---YHHIESGEKPLLAAFKGAREVGFAVIATTLVLVMVFLPISF 451

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G V      F++ +A  ++ ++  ++ +A  +   +     +  R
Sbjct: 452 MDGMVGLLFTEFSVLLATSVLCSSLIALTLAPVLSSKLLKANVQPNR 498



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +   L    +    FN+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMFTVPMGVLGGLLGLYVMNQGFNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    I F   I  +    L   + T+       +P+ +    G     +    + FG+
Sbjct: 931  QLRDRGIEFEKAIIDASARRLRPIMMTAFTTLAGAIPLLLSTGAGFESRLAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFI 823
              A   ++F+  P++  +
Sbjct: 991  GFATLVTLFVI-PLMYRL 1007


>gi|300309657|ref|YP_003773749.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
 gi|300072442|gb|ADJ61841.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1071

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 52/448 (11%), Positives = 116/448 (25%), Gaps = 14/448 (3%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +   +    +E  + ++             N  IT++F      +     V 
Sbjct: 51  YPGANPKVIAETVASPLEEQINGVENMLYMQSQANSDGNLTITVNFRLGVDPDKAQQLVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  D ++  + T        ++                   +    D++  
Sbjct: 111 NRVSQALPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDTTYLRNYAVLNVKDRLAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +          +    DP+++ Q   T   +       N      + G       
Sbjct: 171 IQGVGEVGLFGSGNYAMRVWLDPNKVAQRGLTATDVVRAIREQNVQVAAGVIGASPSSPE 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V  +  +                 +    I                 +    + 
Sbjct: 231 TPLQLSVNAQGRL-------------KTEGEFRDIILKASPDGATTRLGDVARVELAASE 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L                +              L A         +         
Sbjct: 278 YGLRSLLDNKPAVAIPIFQAPGANALDVSTQVRAAMKELSADFPSSVSYSIVYDPTQFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV+IV+ + +   +  ++   ++ +++I T +L+   G T+   S
Sbjct: 338 ASIEAVVHTLLEAIALVVIVVIIFLQTWRASIIPLLAVPVSIIGTFSLMLGFGYTINALS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +        S   +           I    +T +   V 
Sbjct: 398 LFGMVLAIGIVVDDAIVVVENVERNIGAGLSPRDATYRAMQEVSGPIIAIALTLVAVFVP 457

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAI 504
           L F  G   + +        + ++ +A 
Sbjct: 458 LAFMTGLTGQFYKQFAMTIAISTVISAF 485



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L   + N+     ++ L+G S  + +++ +  R+  
Sbjct: 902  SLTLPLAVILIVPMSILAALTGVWLTRGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +      ++    L   + TS+A  + V+P+      G  +  +  I + FG+
Sbjct: 960  -LEMQGRTAVQAAIEASRLRLRPILMTSIAFIMGVVPLVTSSGAGSEMRHAMGIAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +      +F+     + +     +
Sbjct: 1019 LGVTLFGLFLTPVFYVLLRTIDRR 1042



 Score = 45.8 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 54/126 (42%), Gaps = 6/126 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIIGTFSLMLGFGYTINALSLFGMVLAIGIVVDDAIVVVENVERNIG 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S RD   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 425 A---GLSPRDATYRAMQEVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 481

Query: 807 VAASSS 812
           ++A +S
Sbjct: 482 ISAFNS 487


>gi|315126484|ref|YP_004068487.1| preprotein translocase subunit SecD [Pseudoalteromonas sp. SM9913]
 gi|315014998|gb|ADT68336.1| preprotein translocase subunit SecD [Pseudoalteromonas sp. SM9913]
          Length = 612

 Score =  160 bits (404), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 147/506 (29%), Positives = 247/506 (48%), Gaps = 39/506 (7%)

Query: 36  PSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGV 88
           P  + +   + I LGLDL GG   VL+VD D  ++  L    Q     +    K  G+  
Sbjct: 119 PIWLQEFGLSPIKLGLDLNGGVLFVLDVDLDKAIDEQLLSAYQQTKAIIVKQ-KAYGVK- 176

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
                   +I          EN A+K+T  +  + S+   +           + + +  S
Sbjct: 177 AKQTNQGFEI-------SALENAAEKLTSVISDLKSRF-ENLTLTTSTHGNLQVVKVSYS 228

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
           +          + Q++  +R RI+++GI+E+  QR G  RI I+LPG QDP+  ++++G 
Sbjct: 229 EQGRSAFDKQVMSQTLTTLRSRIEELGITEAVTQRQGKQRIRIELPGVQDPAEAKRIIGA 288

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           TA + F+++           G +      G    ++     +G H+N           KP
Sbjct: 289 TASLGFYQLKE--------IGGQTFNLQSGGTIKLDPVPIFTGEHINN-ANIGRDDWGKP 339

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPSGK 316
           +V +S D  G       ++ NIGKP+A +       A                    S +
Sbjct: 340 LVQLSLDSQGGDAMSAFSKANIGKPMATLYSEYSQNAKGEVVKKSEVINVANIAQHLSSR 399

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
             I+   + + A  LA +LRAGSL   + IV E+ +G  LG D+I  G  A++ G+ L +
Sbjct: 400 FSITNMQSQQAAADLALLLRAGSLTAPVTIVHEQTIGPSLGQDNINNGLAALMLGMGLTL 459

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVN 435
            FM + Y + GL+A+ ++ LN+   + L+SLL    LTLP IAG+VL IG+AVD+N+++ 
Sbjct: 460 AFMALWYRRLGLIANVALVLNLTSLVGLMSLLPGVVLTLPGIAGLVLTIGMAVDTNVIIF 519

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERI+EE RK +  + ++  G+ +A +TI D+NIT +I  ++L+  G G V+GFAIT+ L 
Sbjct: 520 ERIKEERRKGRPPYQAIQEGYKQAANTILDANITTMITAIILYGIGYGPVKGFAITLALG 579

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMK 521
           ++ S+FT + + + +   +      K
Sbjct: 580 LITSVFTGVYVSKYLSQSLYLKLGKK 605



 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 97/241 (40%), Gaps = 5/241 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    N +   +      N       L            Q      +  +   +    TI
Sbjct: 370 SEYSQNAKGEVVKKSEVINVANIAQHLSSRFSITNMQSQQAAADLALLLRAGSLTAPVTI 429

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            + + +GP + ++ I  G+  +++     L ++ + ++    L A   L+L++T  +G  
Sbjct: 430 VHEQTIGPSLGQDNINNGLAALMLGMGLTLAFMALWYR-RLGLIANVALVLNLTSLVGLM 488

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           +L  G+   L  +A ++  IG +V+  V++++R+++  +           I +   +   
Sbjct: 489 SLLPGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERR---KGRPPYQAIQEGYKQAAN 545

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  ++   I+ + +   G   +  FAI +A G++ +  + ++++  +   +Y    K 
Sbjct: 546 TILDANITTMITAIILYGIGYGPVKGFAITLALGLITSVFTGVYVSKYLSQSLYLKLGKK 605

Query: 831 A 831
           A
Sbjct: 606 A 606


>gi|270294705|ref|ZP_06200906.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273952|gb|EFA19813.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1056

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/582 (11%), Positives = 165/582 (28%), Gaps = 41/582 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +              +  
Sbjct: 9   KKPIMTSLCFLAVAIFGLFS-----LSKLPVDLYPDIETNTIM---------VMTTYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENVLNSVSNLKHITSRSSENISVITLEFEYGYDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S L  + +  ++   +   I I+L     ++      +          + +       
Sbjct: 115 VSSMLPDEVETPIIFKFSTDMIPILLLSVQAEESQPALYKILD---DNVANPLARVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     +   +S      N +  G  F V     S   + 
Sbjct: 172 TVSISGAPKREVNVYCDPNKLDAYNLSVETISSIISAENRNTPGGTFDVGSNTYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E+  I +                            +      +   +       
Sbjct: 232 EFKDPKEMENIVVGTH--------------------NGASVYLRDVAKVVDSVEERAQKT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +    +   L+          +        L +   
Sbjct: 272 YSNGVQGAMIVVQKQSGANSVAISQKVIDMLPQLQKSLPSDVKLGIIVNTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420
            + T       V++V+F+ +   +  ++   +I ++++ +   L ++   +L + S++ +
Sbjct: 332 LEETIMYAMLFVILVVFVFLGRWRATVIICITIPMSLVASFIYLGIIDGGSLNIISLSCL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD  I+V E +     +      +     +    ++  S +T +     L   
Sbjct: 392 SIAIGNVVDDAIVVLENVTTHIERGSEPKQAAIHATNEVAISVIASTLTMIAVFFPLTMV 451

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G +    R     M + + +S  +A+S    M   ++R +K +S     L         
Sbjct: 452 SGMSGVLFRQLGWMMCVIMTVSTVSALSFTPMMCAQLLRLQKKQSKMFVTLYTPIQRALD 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
               + + R        L  +      F   L          
Sbjct: 512 GLDVWYQNRLNWAVRHRLTVMIGCAAFFVASLFCAKYIGTEF 553



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 91/250 (36%), Gaps = 8/250 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V   ++S++       +   +   +V  +    +SVA ++ +  +  ++ + +P 
Sbjct: 252 VYLRDVAKVVDSVEERAQKTYSNGVQGAMIVVQKQSGANSVAISQKVIDMLPQLQKSLPS 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                  +         I      ++ + + +++ +     +W   +    T+ + +  +
Sbjct: 312 DVKLGIIVNTSDNILNTIDSLEETIMYAMLFVILVVFVFLGRWRATVIICITIPMSLVAS 371

Query: 708 LGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +  +  G   N+ +++ +   IG  V+D +VV + +             +     + N
Sbjct: 372 FIYLGIIDGGSLNIISLSCLSIAIGNVVDDAIVVLENV---TTHIERGSEPKQAAIHATN 428

Query: 767 ETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++       P+  V G  G +       M   + V+  S++     +   +
Sbjct: 429 EVAISVIASTLTMIAVFFPLTMVSGMSGVLFRQLGWMMCVIMTVSTVSALSFTPMMCAQL 488

Query: 824 YDWRAKNARI 833
              + K +++
Sbjct: 489 LRLQKKQSKM 498



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 77/246 (31%), Gaps = 13/246 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +L  +            ++  +V +      +     V +         +P        
Sbjct: 794  KDLGKVVERSAPPTIERKDRERIVTVSAVISGAPLGDVVADGNAIIDKMDLPSGASIQIS 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + V+I  I + I +  +F+   +    + ++    +  L      
Sbjct: 854  GSYEDQQDSFSDLGTLAVLI-VILVFIVMAAQFESLSYPFIIMFSIPFAFSGVLMALFFT 912

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ ++   + LIG  V + +V+ D +           +    +  +    L   + 
Sbjct: 913  GTNLNVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGQAVLHSVVTAGRSRLRPVLM 969

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI-----YDW 826
            T++   + ++PMAV    G  +     + +  G+ V+   ++ +   +            
Sbjct: 970  TTLTTILGMVPMAVGQGEGAEMWRPLGVAVIGGLTVSTILTLILVPVLYCSFAGVGIRRT 1029

Query: 827  RAKNAR 832
            R K  +
Sbjct: 1030 RKKIKK 1035


>gi|269104732|ref|ZP_06157428.1| protein-export membrane protein SecF [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161372|gb|EEZ39869.1| protein-export membrane protein SecF [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 281

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 76/271 (28%), Positives = 142/271 (52%), Gaps = 7/271 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVL-ANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            + SI  +   GLN+G+DF GG+   V  A+  V  S +R  L++    D+     D   
Sbjct: 1   MVISISFVCLKGLNWGLDFTGGVVSEVQLADNKVTSSELRPLLDAGFNQDVVVIAADEPG 60

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            +++R         A+      + + +  +     + NT IVGP++ +EL  +G + +++
Sbjct: 61  RWVLRYATP-----AKGVQYPALNEVLAPLKTDVQVLNTSIVGPQVGKELADQGGLALLL 115

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S + ++ Y+  RF+W  A G++  L+ D+   LGFFA   +EFNLT +AAVL ++GYS+N
Sbjct: 116 SLLCIMGYLSYRFEWRLASGSLLALLHDVVLVLGFFAATQMEFNLTVLAAVLAILGYSLN 175

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           D +++ DR+R+ +       +  +  +++I  T  R++ TS    ++V  + + GG+ + 
Sbjct: 176 DSIIIADRIRELLIAKPK-QTLEETNNEAIVATFSRTMVTSGTTLMTVGSLWLLGGASLE 234

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            F+I M  GI+    SSI +   +  ++   
Sbjct: 235 GFSIAMFIGILTGTWSSISVGTVLPEYLGLK 265


>gi|323344434|ref|ZP_08084659.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Prevotella oralis ATCC 33269]
 gi|323094561|gb|EFZ37137.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Prevotella oralis ATCC 33269]
          Length = 1087

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 70/696 (10%), Positives = 173/696 (24%), Gaps = 55/696 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G +  +        + ++P   P                     
Sbjct: 8   KRPVLSTVISIFFVLLGGIGLI-----SLPIAQYPDIAPPTI---------AVSTTYTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
           +       +      L   +   E +   + +   +    IT+ F      +  A  V  
Sbjct: 54  DA---QTVMNSVVTPLEESINGVENMTYMTSQTTNDGYASITVYFKQGTNADMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L  +  +  +  +  +   +++     +         +       I  I   
Sbjct: 111 RVSQAQALLPAEVTRVGVTVSKRQSSQVLMYTLTTEDGKYDDEFLTNYNNINIIPAIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P +++Q     + ++      N       FG +      
Sbjct: 171 NGVGDVNTPGMKTYSMRIWLQPDKMKQYGLIPSDVTGALAEQNIEAAPGKFGEQSN---- 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                        +    I   +   +         I       
Sbjct: 227 ------------MAYEYVMRYKGRLKTADEYENIIISSDANGQTLKLKDVAKIELGGLQY 274

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +    A  + N   +              P     +          
Sbjct: 275 SVSMKNNNQPSVMGMVQQIAGSNANEIAKNVKAELDKQAKSFPPGMEYKINYDVTEFLYA 334

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   LV  V+++ +   +  L+   ++ + +I +   L + G ++ L  +
Sbjct: 335 SIEEVIKTLVITLVLVFFVVYIFLQDMRSTLIPLIAVPVALIGSFFFLWVFGFSINLLVL 394

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + ++L I + VD  I+V E +  +  +   S   +     +     I    +      V 
Sbjct: 395 SALLLAIAIVVDDAIVVVEAVHAKLDQGYQSALTASIDAMNEISGAIISITLVMAAVFVP 454

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519
           + F GG +    R F +TM +SI+IS   A+++  A+                     + 
Sbjct: 455 VSFIGGTSGTFYREFGVTMAVSIIISAVNALTLSPALCAIFLKPHADEEGEHKSTFISRF 514

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
               +I            +     R    GV I I   +  + +  T       +  G +
Sbjct: 515 HAGFNIVFDKTVAKYKKGVEKSINRRILTGVIILIGIIVLVVTMQTTKTGLVPDEDTGTL 574

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +        +  +     +     S       +  +         S   T ++++  
Sbjct: 575 FVTISTPPATSQARTQEITNIVDKMLASNPAIQSREQIVGYNFIAGQGSDQATFIIKLKP 634

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            +         +             +  K    V+ 
Sbjct: 635 FEERPGGFFHNLAGLWEGDGIKRFFINSKSSTAVLG 670



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 49/402 (12%), Positives = 115/402 (28%), Gaps = 35/402 (8%)

Query: 450  CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
             ++     +  ++I D+    +IA       G GA  G   +M       +    +I + 
Sbjct: 666  TAVLGMIYKQTASIKDAQ---IIAFQPPMIPGFGATNGVTFSMQDKTGGDLNRFFNITQE 722

Query: 510  MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
             +  + +  ++++   +    +      + +   +         +         L+    
Sbjct: 723  YLAELNKRPEIQTAMTSYNPNYPQYMVDVDVSKCKQSGISPSTVLTTLQGYYGGLYASNF 782

Query: 570  N----------------YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            N                              ++  V +S   +        +I+  N   
Sbjct: 783  NAYGKLYRVMVQGDVASRMRPDGLSNIYVRTSSGMVPISEYVNLRRVYGPSNINRFNLFT 842

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              N  V          A   V E+  + + E   L     T       +          +
Sbjct: 843  SINVNVTAADGYSSGQAIKAVEEVAAQMLPEGYGLDYSGLTRSEQESSNS-------TAI 895

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I     + +Y+ +      +   L  I +L   +     F  LFG   ++    +++ LI
Sbjct: 896  IFLLCIVFVYLILSAQYESYILPLSVILSLPFGLAGAFIFTQLFGHSNDIYMQISLIMLI 955

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
            G    + +++     +      T ++ R          L   + TS+A  I +LP+    
Sbjct: 956  GLLAKNAILIVQFALE---RRRTGMAIRYSAILGAAARLRPILMTSLAMVIGLLPLMFAS 1012

Query: 791  GSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G               G+++     IF+   +       + +
Sbjct: 1013 GVGKNGNQTLGAAAVGGMLIGTLIQIFVVPSLFAVFQWLQER 1054



 Score = 41.6 bits (95), Expect = 0.61,   Method: Composition-based stats.
 Identities = 56/491 (11%), Positives = 146/491 (29%), Gaps = 35/491 (7%)

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 ++ G + ++   I  Y                     +     T    SI G+ 
Sbjct: 15  VISIFFVLLGGIGLISLPIAQYPDIAPPTIAVSTTYTGADAQTVMNSVVTPLEESINGVE 74

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
               +   +       I    ++  +   +     +R       S   AL+   V     
Sbjct: 75  NMTYMTSQTTNDGYASITVYFKQGTNADMAAVNVQNRV------SQAQALLPAEVTRVGV 128

Query: 482 GGAVRGFAITMGLSILI---SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
             + R  +  +  ++                 +  I   K++  +              I
Sbjct: 129 TVSKRQSSQVLMYTLTTEDGKYDDEFLTNYNNINIIPAIKRINGVGDVNTPGMKTYSMRI 188

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +Q  + + +G+  S +    +   +      +G       +  +     +  +    N+
Sbjct: 189 WLQPDKMKQYGLIPSDVTGALAEQNIEAAPGKFGEQSNMAYEYVMRYKGRLKTADEYENI 248

Query: 599 ESLQIGD-----------------ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                 +                     +        V    Q         + + VK +
Sbjct: 249 IISSDANGQTLKLKDVAKIELGGLQYSVSMKNNNQPSVMGMVQQIAGSNANEIAKNVKAE 308

Query: 642 ITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAI 697
           + +            +   ++  L   I + I  ++I+ + +   ++I        L  +
Sbjct: 309 LDKQAKSFPPGMEYKINYDVTEFLYASIEEVIKTLVITLVLVFFVVYIFLQDMRSTLIPL 368

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + + +  +  F  +FG   NL  ++A+L  I   V+D +VV + +   +     S   
Sbjct: 369 IAVPVALIGSFFFLWVFGFSINLLVLSALLLAIAIVVDDAIVVVEAVHAKLDQGYQSALT 428

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIF 814
             +   ++NE  G  +  ++      +P++  GG+       F + MA  I+++A +++ 
Sbjct: 429 ASI--DAMNEISGAIISITLVMAAVFVPVSFIGGTSGTFYREFGVTMAVSIIISAVNALT 486

Query: 815 IAAPILLFIYD 825
           ++  +      
Sbjct: 487 LSPALCAIFLK 497


>gi|255536528|ref|YP_003096899.1| AcrB/AcrD/AcrF family membrane transport protein [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342724|gb|ACU08837.1| AcrB/AcrD/AcrF family membrane transport protein [Flavobacteriaceae
           bacterium 3519-10]
          Length = 1049

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 58/582 (9%), Positives = 148/582 (25%), Gaps = 43/582 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G+L      L    + ++P   P               + +  + 
Sbjct: 8   RPVAASVVSILIVILGVL-----GLRSLAVTQYPDIAPPT-------------VSISANY 49

Query: 63  DDFVNGF-LQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +      +   +        I   +       I + F      +  A +V  
Sbjct: 50  TGASAETVMNSVIIPIEEQVNGVEGMDYITSSASNSGSANIQVFFKQGVNPDIAAVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q     L  D  ++ +    ++  +++      D      +     +    I ++   
Sbjct: 110 KVQRAIPLLPGDVTRSGVTVQKQRTSALMFLSFYTDNKDLDEVWLQNYLNINVIPELKRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+++       + ++      +        G        
Sbjct: 170 NGVGDAQAFGGKNFSMRVWLDPAKMASYGLEPSDVTASINEQSREAAAGQLGQNSG---- 225

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                       +             +       I       +         I       
Sbjct: 226 ------------NAFEYVITYKGKFDEAQDYGDIILKSLGNGQFLKLKDVAEIKLDAQSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +    I+   +     +          +          
Sbjct: 274 SSIGENNGRRSVSMGIFQTPGSNAQEIIKDIKVFLEENQKTMPEGVGYTINFDTNDFLEA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+++ +   +  L+   ++ ++++ T   L+L G +L L ++
Sbjct: 334 SIGKVVTTLLEAFVLVFLVVYIFLQDLRSTLIPAIAVPVSIVGTFFFLNLFGYSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFC----SLDMGFSRAYSTIFDSNITALIA 473
             +VL IG+ VD  I+V E +  +     +       S     + A  +I        I 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHAKMENGFTDAKKATVSAMDEITGAIISITLVMAAVFIP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              +    G   + F +T+ ++ILIS   A+++   +    ++       +   ++    
Sbjct: 454 VTFITGPTGVFYQQFGVTLIVAILISAVNALTLSPMLCALFLKPNAAHHKEYAQMNWLQK 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
                   F  A        +         L    +     +
Sbjct: 514 FFYKFNAAFKSATDRYGRFFVFLLRHKWATLVIFAVGGLFFW 555



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 73/250 (29%), Gaps = 9/250 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
              S   + +      + +F     E+  L       G +       + ++          
Sbjct: 794  TASGQMAPISQFVTMEKTFGPKSVERYNLFTSVSLSGSNNPGFSTGDAIRAVQEVAAEHL 853

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                          EL       VI     + +Y  +      +   L  I +L L +  
Sbjct: 854  PADYVVEFTGLSKEELSSGTQTAVIFMLSLVFVYFILAAQYESFLLPLAVIISLPLGVFG 913

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                  + G+E N+    A++ L+G    + +++ +     ++      S       +  
Sbjct: 914  AYFGQKIAGLENNIYFQIALIMLVGLLAKNAILIVEFA---VQRRQHGESLSMAAINAAK 970

Query: 767  ETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + TS A    +LP+    G   +   S     A G+++     +     + +  
Sbjct: 971  ARLRPILMTSFAFIFGMLPLVFASGIGSVGNRSIGTGAAAGLLIGTFFGLLAIPVLFVIF 1030

Query: 824  YDWRAKNARI 833
               + K   +
Sbjct: 1031 QWLQEKVKPL 1040



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 90/244 (36%), Gaps = 7/244 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + + L  V       Q      +N       +   Q    ++    + +++  ++  + +
Sbjct: 256 QFLKLKDVAEIKLDAQSYSSIGENNGRRSVSMGIFQTPGSNAQEIIKDIKVFLEENQKTM 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P                  I K +  ++ + + + + ++I        L     + + I 
Sbjct: 316 PEGVGYTINFDTNDFLEASIGKVVTTLLEAFVLVFLVVYIFLQDLRSTLIPAIAVPVSIV 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F  LFG   NL  + A++  IG  V+D +VV + +   M+   T    +     ++
Sbjct: 376 GTFFFLNLFGYSLNLLTLFALVLAIGIVVDDAIVVVEAVHAKMENGFT--DAKKATVSAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +E  G  +  ++      +P+    G        F + +   I+++A +++   +P+L  
Sbjct: 434 DEITGAIISITLVMAAVFIPVTFITGPTGVFYQQFGVTLIVAILISAVNAL-TLSPMLCA 492

Query: 823 IYDW 826
           ++  
Sbjct: 493 LFLK 496


>gi|163853294|ref|YP_001641337.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium extorquens PA1]
 gi|163664899|gb|ABY32266.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium extorquens PA1]
          Length = 1054

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 63/540 (11%), Positives = 148/540 (27%), Gaps = 40/540 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  IG++  L        + ++P   P               + ++   
Sbjct: 8   RPILAGVISVIITVIGIVAGL-----TLPVAQYPEIAPPI-------------INVQATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                    +  +  L   +        I   S       I  +FA     +  A +V  
Sbjct: 50  PGASAQQAYESIAIPLEQEINGAPNLIYIQSTSSTDGSVSIDATFAVGSNLDAAAAEVLT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGI 176
                 +KL    +   L         +       D       +  +     Q I  +  
Sbjct: 110 RSSRAEAKLPEAVRAQGLEIQKSSRQRLGNVVLYADPSTGFDELFLANYAETQVIKPLRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                + +    +   +    DP+++  L  +T  +       N        G   +  +
Sbjct: 170 VTGMGRIVNFSNMRYAMRIWLDPAKMEALALSTETVLQSIQAQNAQITTGSLGKLPMDRA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +  +  K  ++             +  +    +                 +      
Sbjct: 230 TPFELQLVTKGRLT-------------RPEEFGNIVLRANPDGSVVRVSDVGRVELGSEQ 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +    +       A L     P     +   +     
Sbjct: 277 YGVTSNFDGKPSATLGIFQNPDANAVEVMNGTRATMADLAERFPPGLHYSIALDSTEFVK 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      +V +V ++ +   +  L+   ++ + +I T   ++LLG +    S
Sbjct: 337 EAIYEVVRTLFEAILIVTVVTYLFLQNWRATLIPTIAVPIALIGTFGPMALLGFSFNTLS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL +GL VD  I+V E       +  +   +     +     +  + +      V 
Sbjct: 397 LLGLVLAVGLVVDDAIIVVENTERLMAEGMAPKPASREAVNEIGGPVIATTLVLAALFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G     FA+T+ +S+LIS   ++++  A+   +++             R  L
Sbjct: 457 VAFIPGLTGQLYNQFALTIAISVLISAIVSLTLTPALCGLLLKPHAKDGPRKTRWWRKPL 516



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 95/248 (38%), Gaps = 9/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +S V       +   ++          L   Q    ++V            + E  P 
Sbjct: 262 VRVSDVGRVELGSEQYGVTSNFDGKPSATLGIFQNPDANAVEVMNGTRATMADLAERFPP 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +  +   +  +E I + +  +  + + + +  ++  + W   L     + + +  T
Sbjct: 322 GLHYSIALDSTEFVKEAIYEVVRTLFEAILIVTVVTYLFLQNWRATLIPTIAVPIALIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSIN 766
            G  AL G  FN  ++  ++  +G  V+D ++V     +N  +L    ++ +    +++N
Sbjct: 382 FGPMALLGFSFNTLSLLGLVLAVGLVVDDAIIVV----ENTERLMAEGMAPKPASREAVN 437

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E  G  + T++      +P+A   G        FA+ +A  ++++A  S+ +   +   +
Sbjct: 438 EIGGPVIATTLVLAALFVPVAFIPGLTGQLYNQFALTIAISVLISAIVSLTLTPALCGLL 497

Query: 824 YDWRAKNA 831
               AK+ 
Sbjct: 498 LKPHAKDG 505



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              +   +    +  ++  +++     L  +    L I   +GF AL G+  ++     +L
Sbjct: 872  APLIFGLGVFMIFCFLAGQYESLRMPLVILLATPLAIFGAVGFLALRGMPLDVFGQIGLL 931

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G +  + +++     ++++         +    +    +   + TS A  +  +P+A
Sbjct: 932  LLVGLAAKNAILLVS-FAEDLR--RQGKDALEAAQHATRMRMRPILMTSFAFILGSVPLA 988

Query: 788  VWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  G+  G   S    +  G++VA   ++F+     +     R
Sbjct: 989  IASGAGAGARLSMGTVVIGGLLVATILTLFVTPVFYVAAERLR 1031


>gi|82702851|ref|YP_412417.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrosospira multiformis ATCC
           25196]
 gi|82410916|gb|ABB75025.1| Hydrophobe/amphiphile efflux-1 HAE1 [Nitrosospira multiformis ATCC
           25196]
          Length = 1059

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 70/540 (12%), Positives = 157/540 (29%), Gaps = 40/540 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     ++L  +   +GLL      +    + +FP   P               + + V
Sbjct: 6   LKRPVLAIVLSLLFIFMGLLA-----MKSLPVSQFPDIAPP-------------RVTVSV 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKV 115
                     ++     L   +    G+   +       +  I + F            V
Sbjct: 48  SFPGASAQVLVESSLILLERAINGVPGMRYITSDATSAGEATIQVYFNLGVDPNIAMVNV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +  + S+L +  +   ++    +   ++          +             I +I 
Sbjct: 108 KTRVDQMMSRLPILVQLEGVIVNFVQPSMLMYVNLYSKDKDADQKLLFNYAYVNVIPEIQ 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 Q          +    +P R+R    ++ ++       +   +    G      
Sbjct: 168 RITGIAQATILGSRQYAMRIWMNPERMRAYAVSSEEVMKALATQSIIGRPGRLGQSTGML 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +   +Y++  K                 K  +    I                 +     
Sbjct: 228 AQSKEYVLVYKGR-------------FNKPEEYGDIILRAAPTGEILRIKDVAKVTLDSE 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                           +       +    IE        L+          +        
Sbjct: 275 FYNIFSDKDGFPSASIVLKQNYGSNAQVVIENVKKKLEELKKSFPEGMDYEINYDVSRFV 334

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV +V+F+ +   +  L+   ++ ++++   A++S  G ++ L 
Sbjct: 335 EASIDQVLHTLVEAFILVSLVVFIFLGDWRSTLIPVLAVPVSLVGAFAVMSAFGLSINLI 394

Query: 416 SIAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IG+ VD  I+V E +  +   ++ + + +           I    +  +   
Sbjct: 395 TLFALVLAIGIVVDDAIVVVEAVHAKMAAEHCTPYEASRKVLQEIGGAIIAITLVMVSVF 454

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V L F  G      R FAITM  SI IS   A+S+   +   I++    +    NP++ F
Sbjct: 455 VPLAFMPGPVGVFYRQFAITMASSITISAIVALSLTPVLCAMILKNTHGQPKRRNPINLF 514



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 87/240 (36%), Gaps = 6/240 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                + +  V       +  +I           +V  Q    ++      ++   +++ 
Sbjct: 256 PTGEILRIKDVAKVTLDSEFYNIFSDKDGFPSASIVLKQNYGSNAQVVIENVKKKLEELK 315

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
           +  P            +     I + +  ++ + I + + ++I    W   L  +  + +
Sbjct: 316 KSFPEGMDYEINYDVSRFVEASIDQVLHTLVEAFILVSLVVFIFLGDWRSTLIPVLAVPV 375

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +       + FG+  NL  + A++  IG  V+D +VV + +    K+     +  +   
Sbjct: 376 SLVGAFAVMSAFGLSINLITLFALVLAIGIVVDDAIVVVEAVH--AKMAAEHCTPYEASR 433

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K + E  G  +  ++      +P+A   G V      FAI MA  I ++A  ++ +   +
Sbjct: 434 KVLQEIGGAIIAITLVMVSVFVPLAFMPGPVGVFYRQFAITMASSITISAIVALSLTPVL 493



 Score = 46.2 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 44/441 (9%), Positives = 130/441 (29%), Gaps = 24/441 (5%)

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            +    ++ S+AG  +       +   V   +++ + +  SV   +     +A++      
Sbjct: 603  IEGVQSISSLAGYEVLTEGRGSNAGTVVVNLKDWSERKHSVNQVIHELEEKAHN-----L 657

Query: 468  ITALIATVVLFFFGGGAVRGFAITMGLSIL-ISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
               +         G GA  G A  +    L    F    + +  M  +   K++  +   
Sbjct: 658  GATIEFFQPPAVPGYGAASGLAFRLVDKTLDTDYFEFDELNKKFMNAMRERKELTGLFTF 717

Query: 527  PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF---------THGLNYGIDFKG 577
              + +      +  +    +   +  ++      I   +            +      + 
Sbjct: 718  YAANYPQYELVVDNRLAMQKGVTIEDAMNHLDIMIGSTYEQGFIRFNNFFKVYTQAAPEF 777

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                  +    V          S  +  +  Q  +    + +          A       
Sbjct: 778  RRAPEDVLKYFVKNDKGEMVPYSAFMTMVKKQGPNELTRYNLYNTAAIRAEPAPGYTTGA 837

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIYIWI---RFKWYFA 693
              K I E+   +  +  E+    ++ +   +G   ++I + + + +Y+ +      +   
Sbjct: 838  AIKAIEEVAEATLPRGFEVAWEGLTFDEALRGNEALLIFAVVILFVYLVLAAQYESFALP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  + +L   I          G+  ++ +   ++ LIG    + V++ +    + +    
Sbjct: 898  LVVLCSLPPGIFGAFLLLKGTGLANDVYSQLGMVMLIGLLGKNAVLIVE--FASQRQVEG 955

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
             ++ ++       E     + TS A    ++P+A+    G     +       G++    
Sbjct: 956  GMTVKEAAIAGAKERFRPILMTSFAFIAGLIPLAMATGAGAVGNRTIGTSALGGMLTGTV 1015

Query: 811  SSIFIAAPILLFIYDWRAKNA 831
              + +   +            
Sbjct: 1016 FGVIVIPGLYYIFAKMAEGKK 1036


>gi|157164758|ref|YP_001466087.1| multidrug resistance protein MdtF [Campylobacter concisus 13826]
 gi|112800529|gb|EAT97873.1| multidrug resistance protein MdtF [Campylobacter concisus 13826]
          Length = 1041

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 70/567 (12%), Positives = 166/567 (29%), Gaps = 36/567 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +      +    ++ +PS  P                     +
Sbjct: 9   RPIFATVISIIIVIAGFM-----GIKGLPIEEYPSLTPPTV---------SVSATYSGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++       +        I++ F      +     V   +Q 
Sbjct: 55  AQTIADSVASAIEDQINGVENMLYMQSTSSSAGTMNISVYFKIGSSAKQATIDVNNRVQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   +         + +          + +E    +     D I       
Sbjct: 115 ALSRLPQEVQNMGVTVRERSGSILQVVGFTSPN--MNQVELYNYVNLNIADAIKRVNGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +     P RL Q   T + +     + N+       G +  +  +   Y
Sbjct: 173 DTVLIGNKEYSMRIWLKPDRLAQFKLTPSDVISQVRIQNSQYAAGKIGEQPSKGENPYVY 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +                 K  K   +I                 +    A      
Sbjct: 233 SVVSEGR--------------FKDPKQFGEILIKSDDGTVVKLKEVATVELGAASYASEA 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L        +   +   +   T E        L+        + +          S   
Sbjct: 279 MLNGKPAVPLLLFLQNDANALATAEAVKAKLEELKKTYPVGLEHTIAYNPTEFITVSIDE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LVLIV++  +   +  ++   ++ +++I T   L ++G ++ L ++  ++
Sbjct: 339 VIKTFVEAMVLVLIVMYFFLKSFRATIIPMLAVPVSIIGTFGGLYVMGFSINLITLFALI 398

Query: 422 LGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     ++   SV  +         + +    +      V + F
Sbjct: 399 LAIGIVVDDAIIVIENVERILHEDKEISVKDATFKAMEEVQAPVISIVLVLCAVFVPVSF 458

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FA+T+ +++ IS F A+++  A+   +++ ++ K   I      F    
Sbjct: 459 MEGFVGVIQKQFALTLVVAVCISGFVALTLTPALCAVMLKKQENKPFWIVQKFNDFFDFS 518

Query: 537 CIAIQFMRARFWGVGISILFSICSICL 563
                   A+     I     I  +  
Sbjct: 519 TKLFTAGVAKILKHVIISFIVIGIMGF 545



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 91/267 (34%), Gaps = 13/267 (4%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                G I +       V L  V +                     L+       +++A 
Sbjct: 242 DPKQFGEILIKSDDGTVVKLKEVATVELGAASYASEAMLNGKPAVPLLLFLQNDANALAT 301

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KW 690
              ++   +++ +  P+           +     I + I   + + + +LI ++     +
Sbjct: 302 AEAVKAKLEELKKTYPVGLEHTIAYNPTEFITVSIDEVIKTFVEAMVLVLIVMYFFLKSF 361

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              +  +  + + I  T G   + G   NL  + A++  IG  V+D ++V + + + +  
Sbjct: 362 RATIIPMLAVPVSIIGTFGGLYVMGFSINLITLFALILAIGIVVDDAIIVIENV-ERILH 420

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAF 803
               IS +D   K++ E     +    +  + +  + V       + G +   FA+ +  
Sbjct: 421 EDKEISVKDATFKAMEEVQAPVI----SIVLVLCAVFVPVSFMEGFVGVIQKQFALTLVV 476

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKN 830
            + ++   ++ +   +   +   +   
Sbjct: 477 AVCISGFVALTLTPALCAVMLKKQENK 503



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 87/250 (34%), Gaps = 11/250 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V L+ V +   S+    +   N       +   +       A   + E+V   ++   
Sbjct: 791  GMVPLNSVATLTRSIGPDIVDRFNLFPAAKIMGDPKTGYTSGDAIRAIQEVVNDTLSSDE 850

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
               +   T              G V  I   + + + +  ++ +W   L  IT +   + 
Sbjct: 851  YAISWAGTAYQEVNSQG----TGTVAFIFGMVFVFLILAAQYERWLIPLAVITAVPFAVF 906

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +L    + G+  ++     +L LIG +  + +++ +     M+   +  S  +    + 
Sbjct: 907  GSLLAVWIRGLTNDIYFEIGLLLLIGLAAKNAILIVEFA---MQERESGKSIFESAVNAA 963

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   V TS+A  + V PMA+    G +   S    +  G++ + + +IF        
Sbjct: 964  KLRFRPIVMTSIAFTLGVFPMAISTGAGAASRHSLGTGVVGGMIASTTIAIFFVPMFYYL 1023

Query: 823  IYDWRAKNAR 832
            + +   K  +
Sbjct: 1024 LENLNEKYWK 1033



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 66/530 (12%), Positives = 147/530 (27%), Gaps = 34/530 (6%)

Query: 5    PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-VDED 63
                ++ S I    +  A      +      PS      + +   L   ++++    +  
Sbjct: 529  ILKHVIISFIVIGIMGFATYGLFQKVPKGLVPSEDKGALMVI-TSLPPSTNMLKTKEEVK 587

Query: 64   DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
               N  L   + E    +    +   S+R+      +   D   ++   D     +   N
Sbjct: 588  SISNAILSNPNVEFTMGVAGYDMLASSLRENSAISFIKLKDWSERKGATDGADALVGQFN 647

Query: 124  SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR----IDQIGISES 179
              L         V      + + ++      + + + +   EI               E 
Sbjct: 648  GMLWGSKNSMTFVVNVPPIMGLSMTGGFEMYLQNKSGKSYNEIEADARKVTAAANARPEL 707

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            T  R        Q     D  + +    + +++                         G+
Sbjct: 708  TGVRTTLETNYRQFKITVDKEKAKLFGVSESEIFSTIAASF-----------------GS 750

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             Y+ +  +      +    ++      + +  I             +   + + +   + 
Sbjct: 751  YYINDFNLAGKSYRVYARASDNFRNNPEDLRKIFVRSYEGGMVPLNSVATLTRSIGPDIV 810

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             R    P             SG+       ++   L +    I       + V       
Sbjct: 811  DRFNLFPAAKIMGDPKTGYTSGDAIRAIQEVVNDTLSSDEYAISWAGTAYQEVN------ 864

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            S   GT A + G+V + L +   Y      L    ++   V  +L  + + G T  +   
Sbjct: 865  SQGTGTVAFIFGMVFVFLILAAQYERWLIPLAVITAVPFAVFGSLLAVWIRGLTNDIYFE 924

Query: 418  AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             G++L IGLA  + IL+ E   +E    +S+F S        +  I  ++I   +    +
Sbjct: 925  IGLLLLIGLAAKNAILIVEFAMQERESGKSIFESAVNAAKLRFRPIVMTSIAFTLGVFPM 984

Query: 478  FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                  G  +       +   ++ S   AI  V      +    +     
Sbjct: 985  AISTGAGAASRHSLGTGVVGGMIASTTIAIFFVPMFYYLLENLNEKYWKK 1034


>gi|83721112|ref|YP_443380.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis E264]
 gi|167620520|ref|ZP_02389151.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis Bt4]
 gi|257139629|ref|ZP_05587891.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis E264]
 gi|83654937|gb|ABC39000.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis E264]
          Length = 1100

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 160/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL   +   +       FP+ +                  L    
Sbjct: 10  RPVATTLLALGIALAGLFAFIKLPVSPLPQVDFPTIL--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVAEMTSMSSVGNARIVLQFNLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMV-VSLTSKTASPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSLSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +G H      N          D+                ++   +  + +  +
Sbjct: 217 --KGAIETGPHHYQLYTNDQASKAAQYKDLVIAYRNNAAVSLSDVSSVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        I       +   TIE        L A                    S +  
Sbjct: 275 MNGERAVLVILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG +L   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++        + +         + + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLVVSLTLTPMMCARLLPEAHDPREEGHVARWLERGFEWMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +       +  +  +  +   Y +  KG     
Sbjct: 515 RGYERTLSWALRHPFTVLMTLVATIALNIALYIVVPKGFFPQQ 557



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +S + M++++++R  W   L     + + I  T G   L G   N  ++ A++   G+
Sbjct: 340 IAVSLVVMVVFLFLR-NWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+   S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLVVSLTLTP 483



 Score = 45.5 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 91/215 (42%), Gaps = 7/215 (3%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  + + + + E     TIQ +     +  ++ ++   + ++ +
Sbjct: 869  VATTISFNLPPGVSLSKATQAIYQTMAEAGVPPTIQGSFQGTAQAFQQSLKDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LAAVYIVLGILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D     +       S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFA---IDASRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGSGDGAE 1045

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++V+   +++    + L++   R
Sbjct: 1046 MRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLR 1080


>gi|160888347|ref|ZP_02069350.1| hypothetical protein BACUNI_00760 [Bacteroides uniformis ATCC 8492]
 gi|156862024|gb|EDO55455.1| hypothetical protein BACUNI_00760 [Bacteroides uniformis ATCC 8492]
          Length = 1056

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/582 (11%), Positives = 165/582 (28%), Gaps = 41/582 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +              +  
Sbjct: 9   KKPIMTSLCFLAVAIFGLFS-----LSKLPVDLYPDIETNTIM---------VMTTYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENVLNSVSNLKHITSRSSENISVITLEFEYGYDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S L  + +  ++   +   I I+L     ++      +          + +       
Sbjct: 115 VSSMLPDEVETPIIFKFSTDMIPILLLSVQAEESQPALYKILD---DNVANPLARVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     +   +S      N +  G  F V     S   + 
Sbjct: 172 TVSISGAPKREVNVYCDPNKLDAYNLSVETISSIISAENRNTPGGTFDVGSNTYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E+  I +                            +      +   +       
Sbjct: 232 EFKDPKEMENIVVGTH--------------------NGASVYLRDVAKVVDSVEERAQKT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +    +   L+          +        L +   
Sbjct: 272 YSNGVQGAMIVVQKQSGANSVAISQKVIDMLPQLQKSLPSDVKLGIIVNTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420
            + T       V++V+F+ +   +  ++   +I ++++ +   L ++   +L + S++ +
Sbjct: 332 LEETIMYAMLFVILVVFVFLGRWRATVIICITIPMSLVASFIYLGIIDGGSLNIISLSCL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD  I+V E +     +      +     +    ++  S +T +     L   
Sbjct: 392 SIAIGNVVDDAIVVLENVTTHIERGSEPKQAAIHATNEVAISVIASTLTMIAVFFPLTMV 451

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G +    R     M + + +S  +A+S    M   ++R +K +S     L         
Sbjct: 452 SGMSGVLFRQLGWMMCVIMTVSTVSALSFTPMMCAQLLRLQKKQSKMFLTLYTPIQRALD 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
               + + R        L  +      F   L          
Sbjct: 512 GLDVWYQNRLNWAVRHRLTVMAGCAAFFVASLFCAKYIGTEF 553



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 91/250 (36%), Gaps = 8/250 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V   ++S++       +   +   +V  +    +SVA ++ +  +  ++ + +P 
Sbjct: 252 VYLRDVAKVVDSVEERAQKTYSNGVQGAMIVVQKQSGANSVAISQKVIDMLPQLQKSLPS 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                  +         I      ++ + + +++ +     +W   +    T+ + +  +
Sbjct: 312 DVKLGIIVNTSDNILNTIDSLEETIMYAMLFVILVVFVFLGRWRATVIICITIPMSLVAS 371

Query: 708 LGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +  +  G   N+ +++ +   IG  V+D +VV + +             +     + N
Sbjct: 372 FIYLGIIDGGSLNIISLSCLSIAIGNVVDDAIVVLENV---TTHIERGSEPKQAAIHATN 428

Query: 767 ETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++       P+  V G  G +       M   + V+  S++     +   +
Sbjct: 429 EVAISVIASTLTMIAVFFPLTMVSGMSGVLFRQLGWMMCVIMTVSTVSALSFTPMMCAQL 488

Query: 824 YDWRAKNARI 833
              + K +++
Sbjct: 489 LRLQKKQSKM 498



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 77/246 (31%), Gaps = 13/246 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +L  +            ++  +V +      +     V +         +P        
Sbjct: 794  KDLGKVVERSAPPTIERKDRERIVTVSAVISGAPLGDVVADGNAIIDKMDLPSGVSIQIS 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + V+I  I + I +  +F+   +    + ++    +  L      
Sbjct: 854  GSYEDQQDSFSDLGTLAVLI-VILVFIVMAAQFESLSYPFIIMFSIPFAFSGVLMALFFT 912

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ ++   + LIG  V + +V+ D +           +    +  +    L   + 
Sbjct: 913  GTNLNVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGQAVLHSVVTAGRSRLRPVLM 969

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI-----YDW 826
            T++   + ++PMAV    G  +     + +  G+ V+   ++ +   +            
Sbjct: 970  TTLTTILGMVPMAVGQGEGAEMWRPLGVAVIGGLTVSTILTLILVPVLYCSFAGVGIRRT 1029

Query: 827  RAKNAR 832
            R K  +
Sbjct: 1030 RKKIKK 1035


>gi|25028326|ref|NP_738380.1| preprotein translocase subunit SecF [Corynebacterium efficiens
           YS-314]
 gi|259507381|ref|ZP_05750281.1| protein-export membrane protein SecF [Corynebacterium efficiens
           YS-314]
 gi|23493611|dbj|BAC18580.1| protein-export membrane protein secF [Corynebacterium efficiens
           YS-314]
 gi|259165006|gb|EEW49560.1| protein-export membrane protein SecF [Corynebacterium efficiens
           YS-314]
          Length = 378

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 66/323 (20%), Positives = 138/323 (42%), Gaps = 11/323 (3%)

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
            +   +  +   L      I F+        I+ +  I S+  +   G +  IDF+GG +
Sbjct: 5   HTQKKSRGTFNSLYTGEGGIDFIGRSKLWYWITGILLILSVLFIAVRGFSLSIDFEGGTK 64

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT----RVLE 636
           + + A      +V  +  E+  +     Q        ++ +  +             + E
Sbjct: 65  MNMPAADYSTEAVEETFTEATGVTPELVQVVGSGDARILEIHSERLGDDQIESARLALYE 124

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
             +   +E V          V       +  + I+ +++  +   IYI IR +   A+ A
Sbjct: 125 EFEPVNSEGVATPDAIGNSTVSESWGSTITERMIIALVVFLVLAAIYISIRLEREMAIAA 184

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--S 754
           +  LI+D     G +A+ G E +   V  +LT++ +S+ D VVV+D++R+N + Y     
Sbjct: 185 MAALIVDGVVIAGIYAVIGFEVSPATVIGLLTVLTFSIYDTVVVFDKVRENTEGYEHSLR 244

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAA 809
            ++ +  + ++N+T  RSV T++ + + ++ + V      G   +   A+    G++   
Sbjct: 245 RTYGEQANLAVNQTFMRSVSTTIISALPIIALMVVAVWMMGVGTLKDLALIQLIGVIEGT 304

Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832
            SS+F+A PIL+++ +  A   R
Sbjct: 305 FSSVFLATPILVWLKNRSAATKR 327


>gi|328953105|ref|YP_004370439.1| acriflavin resistance protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453429|gb|AEB09258.1| acriflavin resistance protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1042

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 61/563 (10%), Positives = 148/563 (26%), Gaps = 48/563 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   I   G++           +   P+                  + +   
Sbjct: 9   RRPVMTTLVMLGILLAGVM-----GYRALPVSELPNVDFPT-------------IQVTAS 50

Query: 62  EDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +        ++  + +        +    Q +IT++F   R  +  A  +  
Sbjct: 51  LPGASPETMASAIATPLEKQFATISGIDSMTSTSALGQTRITVTFDLDRDIDAAALDIQA 110

Query: 118 FLQGVNSKLNVDPKKNLLV-TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            +     +L  D             +  I+    +   +    ++           +I +
Sbjct: 111 AISQTLGQLPKDMPSPPTFAKVNPADFPILYLALSSPTLPLSTVD--EYGQTYMSQRISM 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q L        +  + DP  L        ++       N +             +
Sbjct: 169 ISGVAQVLVYGAQKYAVRVQMDPYALASRGIGIDEVQKAVAAGNVNLPTGTIDKSAQAFT 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 + D                          +       +         +   +  
Sbjct: 229 IKATGQLFDAA--------------------AFRPLIVAYRHGKPVRLNEIGRVVDSVQT 268

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                              +   +     +    L    RA         V      +  
Sbjct: 269 DRVASWYNRTRSVVLAIKRQPGTNTVEVSDNVKKLLPSFRAQLPAAISLDVLYDRSLSIQ 328

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    + T  +   LV++V+F+ +      ++   ++ +++I   A + LLG ++   S
Sbjct: 329 ESIHDVQFTLILTVCLVILVIFLFLRNISATVIPSLAVPMSIIGAFAAMYLLGFSIDNLS 388

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  + L +G  VD  I++ E I       +    +   G      TI    ++     + 
Sbjct: 389 LMALTLSVGFVVDDAIVMLENIVRHQEMGKDRLNATFAGSQEIAFTILSMTVSLAAVFIP 448

Query: 477 LFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG   R    FA+T+ ++ILIS F ++S+   +    ++  K +           +
Sbjct: 449 VLFMGGVVGRLLNEFAVTISVAILISGFISLSLTPMLCARFLKPPKEQGHGRFYQFFERI 508

Query: 534 IPDCIAIQFMRARFWGVGISILF 556
               + +     +          
Sbjct: 509 FDGMLRLYDWSLKKVLRYRRATM 531



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/204 (10%), Positives = 69/204 (33%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           V +++     ++    ++         I   +       ++   +
Sbjct: 285 IKRQPGTNTVEVSDNVKKLLPSFRAQLPAAISLDVLYDRSLSIQESIHDVQFTLILTVCL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +L+           +     + + I        L G   +  ++ A+   +G+ V+D +
Sbjct: 345 VILVIFLFLRNISATVIPSLAVPMSIIGAFAAMYLLGFSIDNLSLMALTLSVGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +   ++         +       E     +  +++     +P+   GG V   + 
Sbjct: 405 VMLENI---VRHQEMGKDRLNATFAGSQEIAFTILSMTVSLAAVFIPVLFMGGVVGRLLN 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ ++  I+++   S+ +   +
Sbjct: 462 EFAVTISVAILISGFISLSLTPML 485



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 90/274 (32%), Gaps = 10/274 (3%)

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
            + +             G + +     + V L  V           I+             
Sbjct: 752  VIMEVLPQYQMDPAALGLLYVRADTGQLVPLESVAQLSRGAGALTINHAGQIPSVTISFN 811

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            L+       A   +      K+ + +P S   + +         L   GI+ ++   +  
Sbjct: 812  LKPGVALGDAVAEI-----NKVAQELPASITTSFQGTAQAFQSSLKGLGILLIMAILVIY 866

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            L+   +   +   +  ++ L       L    LF ++ NL A   ++ LIG    + +++
Sbjct: 867  LVLGILYESFIHPVTILSGLPSAGFGALVTLLLFKMDLNLYAFVGIIMLIGIVKKNAIMM 926

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             D   +         S  D I +         + T+M+A    LP+A+    G       
Sbjct: 927  IDFALE--AQRRHGKSPHDAIYEGCLLRFRPIMMTTMSALFGTLPIALGIGAGSEARQPL 984

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             + +  G++ +   +++I   I +++ ++  +  
Sbjct: 985  GLAVVGGLLFSQVLTLYITPVIYIYLDNFNRRVK 1018


>gi|157374406|ref|YP_001473006.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
 gi|157316780|gb|ABV35878.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
          Length = 1035

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/648 (10%), Positives = 176/648 (27%), Gaps = 40/648 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVVAIVLSLLLCVFGAVS-----FSKLAVREMPDVENPVVT---------VMTTYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            V   +  
Sbjct: 55  SATIMESQITTALEDELTGISGIDEITSVTRNGMSRITITFDLDWDLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +    ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPDEANDPIVSKDNGSGEPSVYINLSSS--VMDRTQLTDYAQRVLEDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     TTA +                          N  
Sbjct: 173 SVSISGGLYKVMYVQLKPELMAGRNVTTADIIASLKKE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      +   TA            +          +     ++           
Sbjct: 214 TPGGEVRNDTTVMTVRTARLYYHPEDFDYLVVRTASDGTPVYLKDVASVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     + A      ++         +V+  +      S + 
Sbjct: 274 KSDGVPNLSLGIIAQSDANPLEVAKAAHKEVERIQQFLPKGTQLVVDYDSTVFIDRSITE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I      +  G ++ L ++  ++
Sbjct: 334 VYNTLFITGGLVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANFFGFSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   I++     +     +   F   + I
Sbjct: 454 GMVGRLFTEFSVMLAMSVIFSSIVALTLTPVLGSKILKANVKPNRFNLWIEGIFSQLERI 513

Query: 539 AIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               +    RF  V   ++        L    +   +  +    +     +  + +    
Sbjct: 514 YRVLVAKAVRFRFVAPVVIVLCIIGSGLLMQSVPSQLAPQEDRGVIFAFVKGAEGTSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              ++ I +       G+          P            V  ++ +
Sbjct: 574 MTANMDIVEQRLMPLLGKGVIKSFSVQAPAFGGRAGDQTGFVIMQLED 621



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 85/284 (29%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++         +     F  +  
Sbjct: 219 VRNDTTVMTVRTARLYYHPEDFDYLVVRTASDGTPVYLKDVASVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-----V 671
             + L            V +   K++  I          +V    +  + R        +
Sbjct: 279 PNLSLGIIAQSDANPLEVAKAAHKEVERIQQFLPKGTQLVVDYDSTVFIDRSITEVYNTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +         FG   NL  + A++  IG
Sbjct: 339 FITGGLVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAANFFGFSINLLTLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGRLFTEFSVMLAMSVIFSSIVALTLTPVLGSKILKANVKPNR 498



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +    + +    GF  LF  G   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMFTVPMGVFGGFLGLFLTGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            I     I  +    L   + T+    I  +P+ +    G     +    + FG+  A   
Sbjct: 937  IELDQAIIDASARRLRPILMTAFTTLIGAVPLIMSTGAGSESRIAVGTVVFFGMAFATFV 996

Query: 812  SIFIAAPILLFIYD 825
            ++ +   +   I  
Sbjct: 997  TLLVIPAMYRLISG 1010


>gi|222054049|ref|YP_002536411.1| acriflavin resistance protein [Geobacter sp. FRC-32]
 gi|221563338|gb|ACM19310.1| acriflavin resistance protein [Geobacter sp. FRC-32]
          Length = 1489

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 56/628 (8%), Positives = 171/628 (27%), Gaps = 55/628 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +   +  ++   +  +G+         +  ++ +P+                  +V    
Sbjct: 9   KRPVFAAVMMLALVVLGIFS-----YRRLSVEMYPNVEIPV-----------ISIVTKFP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + V   +    +E  + +      +   R+  + + + F       ++A +    +
Sbjct: 53  GASPETVEREVSKRIEEAVNQVAGVKHVMSFSRESVSTVVVEFRLEEQLNDVAQEARAKI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +   L    ++ ++       + +       + ++    E ++ + ++   +      
Sbjct: 113 TSIRGDLPTATEEPIIQKLDFNAMPVAALAVQSETLLPR--ELTVLVEKRVKKRFESIAG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         ++  E DP+RL  +      +       N +                 
Sbjct: 171 VGKVDMIGGQKREVNVEIDPARLDAVGLGVNDVVDGLRSENTNTPLGRL----------- 219

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                      G           P+       +       R         +G  +     
Sbjct: 220 ---------TRGGAEYPLRMEGKPERADDYRQMVIARSNGRPVTLAEVAAVGDGVEEKRR 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++            ++  +    ++    +   +     P     +          S 
Sbjct: 271 LALINGIPAIGLDIYKQSGANQVQVVDNIKKIMGKVEKDLPPGVRLSMVRDGSIMTRDSL 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  + T  I   L ++++F  +   +  ++   ++ ++VI +  +++ +G TL + ++  
Sbjct: 331 ADVQETLLIGGILTIVIVFCFINSWRSTVITGVTLPISVISSFIVMNAMGMTLNVMTLMA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLD---MGFSRAYSTIFDSNITALIATVV 476
           + L IGL +D  I+V E I       +    +          A      S +   +    
Sbjct: 391 LSLAIGLLIDDAIVVRENIVRHLEHGKDHMEASRFGTAEIGLAVFATTMSVVAVFVPVAF 450

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------------KKMKSID 524
           +    G     F IT+  ++L+S+F + ++   +                   K +++ +
Sbjct: 451 MKGIVGRFFFPFGITVSFAVLVSLFVSFTLDPMLSSRWHDPAITARGHRKGLAKLLETFN 510

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        I       +         F                 +  G  Q+   
Sbjct: 511 DWFDYTADKYRSAIGWALDHRKTVMASAFAAFIAGLAIFATLESSFMATEDNGEFQVSFK 570

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFD 612
                 ++   + L  +     +    D
Sbjct: 571 TAPDASMAETENRLGLVLDRMKNIPEID 598



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 77/207 (37%), Gaps = 23/207 (11%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               +++  V+K +   V LS +++  I+      ++    ++G I++ + +  +I    
Sbjct: 297 DNIKKIMGKVEKDLPPGVRLSMVRDGSIMTRDSLADVQETLLIGGILTIVIVFCFIN--- 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +    TL + +  +       G+  N+  + A+   IG  ++D +VV    R+N+
Sbjct: 354 SWRSTVITGVTLPISVISSFIVMNAMGMTLNVMTLMALSLAIGLLIDDAIVV----RENI 409

Query: 749 -KLYTTSISFRDLIDKSINETLGRSVYTSMA---------AFISVLPMAVWGGSVIGSFA 798
            +         +       E       T+M+             ++    +       F 
Sbjct: 410 VRHLEHGKDHMEASRFGTAEIGLAVFATTMSVVAVFVPVAFMKGIVGRFFFP------FG 463

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYD 825
           I ++F ++V+   S  +   +    +D
Sbjct: 464 ITVSFAVLVSLFVSFTLDPMLSSRWHD 490



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++++ + + + +  +F+ +   L  + +L L I    G   L G   N+ ++  ++ L+
Sbjct: 862 SLLLAVLFVYLILAAQFESFLEPLAIMLSLPLSIVGVAGMLKLTGDTVNIMSLIGLIMLM 921

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           G    + +++ D  +  +      +  R  + ++    L     T++A    +LP+  
Sbjct: 922 GLVTKNAILLVDYAK--VLQRRDGMPRRQAVIEAGRTRLRPIAMTTLAMIFGMLPLFF 977



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/447 (9%), Positives = 120/447 (26%), Gaps = 37/447 (8%)

Query: 59  EVDEDDFVNGFLQMYSDEL------RSFLKKEGIGVFSMRQIQNK------ITLSFADSR 106
           +V      +  +    + L         + +      ++    +       + +   + +
Sbjct: 566 QVSFKTAPDASMAETENRLGLVLDRMKNIPEIDHTYATIGAGDSGTVRDGLVYVKLKEKQ 625

Query: 107 FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
            +     ++   ++    ++        +V +      +         +    I     +
Sbjct: 626 ERTRKQQEIQQVVRERLRQIPGITFSIEIVGSMGSGKPLN------ANLKGEDIAVLKGL 679

Query: 167 IRQRIDQIGISESTIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
             +  +++      +    +    + +     D  R      +T  +             
Sbjct: 680 AAKLKEEMYKIPGIVDISATLEHDIPEYRLRVDRERALSAGVSTNDIVASL--------- 730

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                R +       Y  ED   +            +P   + +     D  G+ +   +
Sbjct: 731 ----GRLVGGEAITTYEDEDGDAVDVRVRLPENLRQNPGQVRDLKISVPDGAGSTKLVPM 786

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
           +     +  A   +              +      G    +     + +       +  +
Sbjct: 787 SAITSYEVAATPSEINRRDLSRQVTVSANLDNLPIGTAVKKVEAAASNIRMPPGYSVNFS 846

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
              E        S      +  +    V ++L          L    S+ L+++    +L
Sbjct: 847 GEAED----MAESFGYMGESLLLAVLFVYLILAAQFESFLEPLAIMLSLPLSIVGVAGML 902

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIF 464
            L G T+ + S+ G+++ +GL   + IL+ +  +  + R       ++          I 
Sbjct: 903 KLTGDTVNIMSLIGLIMLMGLVTKNAILLVDYAKVLQRRDGMPRRQAVIEAGRTRLRPIA 962

Query: 465 DSNITALIATVVLFFFGGGAVRGFAIT 491
            + +  +   + LFF  G    G A  
Sbjct: 963 MTTLAMIFGMLPLFFAIGSGAEGRAPM 989


>gi|299069604|emb|CBJ40876.1| multidrug efflux system, subunit B [Ralstonia solanacearum CMR15]
          Length = 1041

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/585 (11%), Positives = 152/585 (25%), Gaps = 45/585 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATTLLMVAILLSGLVAYRMLPLSALPEVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F  S   +    +V   +   
Sbjct: 56  PDVMTSSITAPLERQFGQMPGLKQMTSASSGGASVITLQFDLSLSLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +      + +L    I        +    +  +   ++        
Sbjct: 116 GNLLPTDLPMPPIYSKVNPADAPIL-ALAITSKTLPLPKLEDIVDTRVAQKLSQLPGIGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  +   +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRIQVNTQALAALGLSIDDIRTAIGNANVNGAKGSFDGPMRASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                       +                 I            
Sbjct: 235 LRSAAE--------------------YGTMIVAYKNGAPIRLTDVAQIIDGAENSKLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +  A  L   L+          V          S +  
Sbjct: 275 ANTTPAIILNVQRQPGANVIDVVNRAKALLPQLKDTLPANIDVAVLTDRTTTIRASVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFELLLAVALVVMVIFLFLRNVPATIIPAVAVPLSLVGTFGVMYLAGFSVNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I            +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYIEDGDPPMEAALKGAKQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD--- 536
             G   R FAIT+ +SILIS   ++++   M   ++R+       +   +      +   
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLRHIPEPEQTLFYHAAGQFFDNVIA 514

Query: 537 ----CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
                +     R R   +       +  +  ++     + +   G
Sbjct: 515 QYGRMLQWVLDRQRTTLLVAIGTLVLTGLLYVYVPKGFFPVQDTG 559



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++ + M+I++++R      +     + L +  T G   L G   N   + A+    G+
Sbjct: 340 LAVALVVMVIFLFLR-NVPATIIPAVAVPLSLVGTFGVMYLAGFSVNNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +         +   K   +     +  + +    ++P+   G  
Sbjct: 399 VVDDAIVMIENI---ARYIEDGDPPMEAALKGAKQIGFTIISLTFSLIAVLIPLLFMGDV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FAI +A  I+++A  S+ +  
Sbjct: 456 VGRLFREFAITLAVSILISAVVSLTLTP 483



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 92/273 (33%), Gaps = 15/273 (5%)

Query: 571  YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
              +         +         V      ++     S       +     + +      +
Sbjct: 759  PQLQKGPQSLYDLRVASTGGQQVPLGAFATVVEQPGSLVVNHQGQFPSATISFNLARGAS 818

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
                ++ +     E+   +++Q +        +  +   +  ++ + I M I + + ++ 
Sbjct: 819  LGTAVDAINAAEQEVGLPASMQTSFQGAALAFQSSLSNELWLILAAIITMYIVLGVLYES 878

Query: 691  YFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                  I + +          +L   G +  + A+  ++ LIG    + +++ D   +  
Sbjct: 879  TIHPVTILSTLPSAG-VGALLSLLVSGKDMGIIAIIGIILLIGIVKKNAIMMIDFALE-- 935

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++ RD I ++        + T+MAA +  LP+ +    G  +     I M  G+
Sbjct: 936  AEREQGMAPRDAIYQACLLRFRPILMTTMAALLGALPLMLGNGVGSELRQPLGITMVGGL 995

Query: 806  VVAASSSIFIAAPILLF-------IYDWRAKNA 831
            +V+   ++F    I L        + DWR + A
Sbjct: 996  LVSQVLTLFTTPVIYLAFDSLGHRLRDWRERRA 1028


>gi|262202234|ref|YP_003273442.1| protein-export membrane protein SecD [Gordonia bronchialis DSM
           43247]
 gi|262085581|gb|ACY21549.1| protein-export membrane protein SecD [Gordonia bronchialis DSM
           43247]
          Length = 550

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 123/524 (23%), Positives = 219/524 (41%), Gaps = 54/524 (10%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            PW   L   +  + ++  L  F     L+            LG+DL+GG+ + L    +
Sbjct: 24  PPWQP-LAVFLALLAVVYGLIFFTGAKTLEP----------KLGIDLQGGTRVTLTARTE 72

Query: 64  ---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLF 118
                    L      +   +   G+G   +    + + ++    D      +     L+
Sbjct: 73  NGQQPSREQLDRAKQIIEQRVNGLGVGGSEVVINGDNLVITVPGKDGSQARTLGQTARLY 132

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++ V  +      +       ++      +                            SE
Sbjct: 133 VRPVIGE--PQLARPQAPKPEDQAPPPGQT---------------------------QSE 163

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK-VLPNNSKKGFMFGVRFLRDSD 237
              Q +   R L Q P   D   + +L    A+M+  +                     D
Sbjct: 164 QVQQAIAEQRKLRQAPANADQQTIARLQAQMAQMNCAEGTSDPLMGNDLPDQYLVACSQD 223

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G+Q  +     I G  +  A+A  D +T + +V ++F    A  + + T  ++G   A  
Sbjct: 224 GSQVYLLGPEIIDGRDIKEASAETDSQTGEWIVSLTFKGDAASFWPQYTASHVGTATAFT 283

Query: 298 LDGRVLTAPVINQAIPSGKAQISGN----FTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LD RV++APVINQAIP G  +ISG     FT  +AG LA +L+ GSLP+  +      V 
Sbjct: 284 LDTRVVSAPVINQAIPGGSTRISGGSADPFTEASAGDLANVLKYGSLPLSFDASNAETVS 343

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----G 409
           A LG  S+  G  A   GL+ ++++ +  Y   G++   S+ L  ++   ++ LL    G
Sbjct: 344 ATLGLSSLRAGLLAGAIGLLAVLIYALAYYRMLGILTFASLVLAGLMVYGIMVLLGRWIG 403

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            TL L  IAG+++GIG+  DS ++  ERI++E R+ +S   ++  G++ A  TI+  N  
Sbjct: 404 FTLDLAGIAGLIIGIGMTADSFVVYFERIKDEMREGRSFRSAVPRGWASARRTIWSGNAV 463

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
           + IA  V++    G VRGFA T+GL+ ++ +     +   ++++
Sbjct: 464 SFIAAAVIYILAVGEVRGFAFTLGLTTILDVVVVFLVTHPLVVY 507



 Score = 88.2 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 84/242 (34%), Gaps = 10/242 (4%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               V  +   +    +    +  Q   G    +      P    +   +  ++  K   
Sbjct: 272 TASHVGTATAFTLDTRVVSAPVINQAIPGGSTRISGGSADPFTEASAGDLANVL--KYGS 329

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           +       N E V   +    +R G++   I  +A+LIY    ++    +    +L+L  
Sbjct: 330 LPLSFDASNAETVSATLGLSSLRAGLLAGAIGLLAVLIYALAYYRML-GILTFASLVLAG 388

Query: 705 TKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               G   L G       +L  +A ++  IG + +  VV ++R++  M+      SFR  
Sbjct: 389 LMVYGIMVLLGRWIGFTLDLAGIAGLIIGIGMTADSFVVYFERIKDEMRE---GRSFRSA 445

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           + +            +  +FI+   + +     +  FA  +    ++       +  P++
Sbjct: 446 VPRGWASARRTIWSGNAVSFIAAAVIYILAVGEVRGFAFTLGLTTILDVVVVFLVTHPLV 505

Query: 821 LF 822
           ++
Sbjct: 506 VY 507


>gi|86143655|ref|ZP_01062031.1| putative AcrB/AcrD family RND transport protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85829698|gb|EAQ48160.1| putative AcrB/AcrD family RND transport protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 1045

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 73/645 (11%), Positives = 168/645 (26%), Gaps = 52/645 (8%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF-LQMYSDELRSFLKK- 83
            L    ++++P   P               + +  +         L+     +   +   
Sbjct: 26  GLTTLPVEQYPDIAPPT-------------VQVTANYTGASAETILESVIIPIEEQINGV 72

Query: 84  EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           EG+   +     N   +IT+ F      +  A  V   +   N  L  +  +  +VT   
Sbjct: 73  EGMSYITSTATNNGTAEITVYFDQDTDPDIDAVNVQNRVALANPLLPQEVTQAGVVTQKR 132

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
           +  S++            A   +  +    +                +    +     P 
Sbjct: 133 QTGSLMFLSMYSKNPEYDATFLNNYLNINVVPAFKRINGVGDVNVFSQQDYAMRIWLKPD 192

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           RL+      + ++      +        G     + +   Y ++                
Sbjct: 193 RLKAYNLVPSDVAAALNEQSLEAAAGTLG---QNNGETFSYTIKYPGR------------ 237

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
              +  +    I       +        +I                             +
Sbjct: 238 -YKEEGQYEDIIIKALENGQFLRLKDIADIQLDAQSYAASSQTKGYPSVTFAVYQTKGSN 296

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
               IET       + AG        +          S      T      LV IV+F+ 
Sbjct: 297 AQEIIETVMEELETIEAGLPEGVEIFIPYNTNEFLEASIEKVVHTLIEAFILVFIVVFIF 356

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           +   +  L+   ++ ++++ T   L+L G ++ L ++  +VL IG+ VD  I+V E +  
Sbjct: 357 LQDFRSTLIPAIAVPVSIVGTFFFLNLFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHA 416

Query: 441 ENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSI 496
           +  +  +S   +           I    +      + + F  G        F IT+ +SI
Sbjct: 417 KIDEGAKSAKSATITAMHEISGAIISITLVMAAVFIPVTFITGPTGVFYEQFGITLIVSI 476

Query: 497 LISMFTAISIVRAMMIFI--------------IRYKKMKSIDINPLSRFFLIPDCIAIQF 542
           +IS   A+++  A+                     +     +    +        +   +
Sbjct: 477 VISAVNALTLSPALCALFLKAHDEKETKEKKSFLQRFYDKFNKGFNATIEHYGKSLTFLY 536

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
            R       + +           T       + +G + + +       L      + +L 
Sbjct: 537 KRKWITFAMLILAGVGIYWSATTTRTGFVPNEDRGVLFIDLSLAPGSSLDRTNEAITALY 596

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                    +       R       S      +++      E   
Sbjct: 597 EQIKDLPGVEAANTVAGRGLISGQGSNNALGFIKLKDFSEREADS 641



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 79/288 (27%), Gaps = 17/288 (5%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            +    S       + +          D    + +         LS   S         ++
Sbjct: 757  YAADFSRFGKQYRVYIQAYPDYRADTDDINSMFIRTSDGNMTPLSEYVSFERVYGPQAVT 816

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
              N        V +          + V     K         +    E V          
Sbjct: 817  RFNLFNSTKVNVSMNPGYSSGDGISIVEAEAAKLANNYDIAYSGLTREEVNAGSQ----- 871

Query: 668  KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 VI     + +Y  +      +   L  I +L L I        + G+E N+    
Sbjct: 872  ---TVVIFLLCVVFVYFLLSAQYESYLLPLAVILSLPLGIFGAFFTTKIMGLENNIYFQI 928

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            A++ L+G    + +++ +     ++      S  D         L   + TS A  + ++
Sbjct: 929  ALIMLVGLLAKNAILIVEFA---IQRRKNGESIVDAAIDGAKARLRPILMTSFAFILGLM 985

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            P+ +    G +   S       G+++     +F    + +     + K
Sbjct: 986  PLVLATGVGAAGNRSIGTGAVGGLLIGTILGVFAIPILYIMFQYLQEK 1033



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 90/255 (35%), Gaps = 7/255 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +   + + L  +       Q    S Q            Q +  ++      +    + I
Sbjct: 252 LENGQFLRLKDIADIQLDAQSYAASSQTKGYPSVTFAVYQTKGSNAQEIIETVMEELETI 311

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
              +P            +     I K +  +I + I + I ++I    +   L     + 
Sbjct: 312 EAGLPEGVEIFIPYNTNEFLEASIEKVVHTLIEAFILVFIVVFIFLQDFRSTLIPAIAVP 371

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + I  T  F  LFG   NL  + A++  IG  V+D +VV + +   +       S +   
Sbjct: 372 VSIVGTFFFLNLFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHAKIDEGAK--SAKSAT 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
             +++E  G  +  ++      +P+    G        F I +   IV++A +++ ++  
Sbjct: 430 ITAMHEISGAIISITLVMAAVFIPVTFITGPTGVFYEQFGITLIVSIVISAVNALTLSPA 489

Query: 819 I-LLFIYDWRAKNAR 832
           +  LF+     K  +
Sbjct: 490 LCALFLKAHDEKETK 504


>gi|317477705|ref|ZP_07936899.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
 gi|316906139|gb|EFV27899.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
          Length = 1056

 Score =  160 bits (404), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 65/582 (11%), Positives = 165/582 (28%), Gaps = 41/582 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +              +  
Sbjct: 9   KKPIMTSLCFLAVAIFGLFS-----LSKLPVDLYPDIETNTIM---------VMTTYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENVLNSVSNLKHITSRSSENISVITLEFEYGYDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S L  + +  ++   +   I I+L     ++      +          + +       
Sbjct: 115 VSSMLPDEVETPIIFKFSTDMIPILLLSVQAEESQPALYKILD---DNVANPLARVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     +   +S      N +  G  F V     S   + 
Sbjct: 172 TVSISGAPKREVNVYCDPNKLDAYNLSVETISSIISAENRNTPGGTFDVGSNTYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E+  I +                            +      +   +       
Sbjct: 232 EFKDPKEMENIVVGTH--------------------NGASVYLRDVAKVVDSVEERAQKT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +    +   L+          +        L +   
Sbjct: 272 YSNGVQGAMIVVQKQSGANSVAISQKVIDMLPQLQKSLPSDVKLGIIVNTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420
            + T       V++V+F+ +   +  ++   +I ++++ +   L ++   +L + S++ +
Sbjct: 332 LEETIMYAMLFVILVVFVFLGRWRATVIICITIPMSLVASFIYLGIIDGGSLNIISLSCL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD  I+V E +     +      +     +    ++  S +T +     L   
Sbjct: 392 SIAIGNVVDDAIVVLENVTTHIERGSEPKQAAIHATNEVAISVIASTLTMIAVFFPLTMV 451

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G +    R     M + + +S  +A+S    M   ++R +K +S     L         
Sbjct: 452 SGMSGVLFRQLGWMMCVIMTVSTVSALSFTPMMCAQLLRLQKKQSKMFLTLYTPIQRALD 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
               + + R        L  +      F   L          
Sbjct: 512 GLDVWYQNRLNWAVRHRLTVMAGCAAFFVASLFCAKYIGTEF 553



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 91/250 (36%), Gaps = 8/250 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V   ++S++       +   +   +V  +    +SVA ++ +  +  ++ + +P 
Sbjct: 252 VYLRDVAKVVDSVEERAQKTYSNGVQGAMIVVQKQSGANSVAISQKVIDMLPQLQKSLPS 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                  +         I      ++ + + +++ +     +W   +    T+ + +  +
Sbjct: 312 DVKLGIIVNTSDNILNTIDSLEETIMYAMLFVILVVFVFLGRWRATVIICITIPMSLVAS 371

Query: 708 LGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +  +  G   N+ +++ +   IG  V+D +VV + +             +     + N
Sbjct: 372 FIYLGIIDGGSLNIISLSCLSIAIGNVVDDAIVVLENV---TTHIERGSEPKQAAIHATN 428

Query: 767 ETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++       P+  V G  G +       M   + V+  S++     +   +
Sbjct: 429 EVAISVIASTLTMIAVFFPLTMVSGMSGVLFRQLGWMMCVIMTVSTVSALSFTPMMCAQL 488

Query: 824 YDWRAKNARI 833
              + K +++
Sbjct: 489 LRLQKKQSKM 498



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 76/241 (31%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +L  +            ++  +V +      +     V +         +P        
Sbjct: 794  KDLGKVVERSAPPTIERKDRERIVTVSAVISGAPLGDVVADGNAIIDKMDLPSGVSIQIS 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + V+I  I + I +  +F+   +    + ++    +  L      
Sbjct: 854  GSYEDQQDSFSDLGTLAVLI-VILVFIVMAAQFESLSYPFIIMFSIPFAFSGVLMALFFT 912

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ ++   + LIG  V + +V+ D +           +    +  +    L   + 
Sbjct: 913  GTNLNVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGQAVLHSVVTAGRSRLRPVLM 969

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++   + ++PMAV    G  +     + +  G+ V+   ++ +   +         +  
Sbjct: 970  TTLTTILGMVPMAVGQGEGAEMWRPLGVAVIGGLTVSTILTLILVPVLYCSFAGIGIRRT 1029

Query: 832  R 832
            R
Sbjct: 1030 R 1030


>gi|188583557|ref|YP_001927002.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium populi BJ001]
 gi|179347055|gb|ACB82467.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium populi BJ001]
          Length = 1048

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/549 (12%), Positives = 150/549 (27%), Gaps = 40/549 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  IG++  L        + ++P   P               + ++   
Sbjct: 8   RPILAGVISVIITVIGIVAGL-----TLPVAQYPEIAPPI-------------INIQATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                    +  +  L   +        I   S       I  +F      +  A +V  
Sbjct: 50  PGASAQQAYESIAIPLEQEINGAPNLIYIQSTSSTDGSVSIDATFEVGSNLDAAAAEVLT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGI 176
                 +KL    +   L         +       D+      +  +     Q I  +  
Sbjct: 110 RSSRAEAKLPEAVRAQGLEIQKSSRQRLGNVVLYADEGTGFDELFLANYAETQVIKPLRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                + L    +   +    DP+++  L  +T  +       N        G   +  +
Sbjct: 170 VTGMGRILNFSNMRYAMRIWLDPAKMEALALSTETVLQSIEAQNAQVTTGSLGKLPIDRA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +  +  K  +              K  +    +                 +      
Sbjct: 230 TPFELQLVTKGRL-------------MKPEEFGNIVLRANPDGSVVRVSDVARVELGSEQ 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +    +       A L     P     V   +     
Sbjct: 277 YGVTSNFDGKPSATLGIFQNPDANAVDVMNGTRATMADLAKRFPPGLHYAVALDSTEFVK 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      +V +V ++ +   +  L+   ++ + +I T   ++LLG +    S
Sbjct: 337 EAIYEVVRTLIEAILIVTVVTYLFLQNWRATLIPTIAVPIALIGTFGPMALLGFSFNTLS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL +GL VD  I+V E       +      +     +     +  + +      V 
Sbjct: 397 LLGLVLAVGLVVDDAIIVVENTERLMAEGMEPKPASREAVNEIGGPVIATTLVLAALFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G     FA+T+ +S+LIS   ++++  A+   +++    +        R  L
Sbjct: 457 VAFIPGLTGQLYNQFALTIAISVLISAVVSLTLTPALCGLLLKPHPPEQHRTTRWWRKPL 516

Query: 534 IPDCIAIQF 542
                A++ 
Sbjct: 517 DGFNWALER 525



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 90/236 (38%), Gaps = 9/236 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +S V       +   ++          L   Q    ++V            + +  P 
Sbjct: 262 VRVSDVARVELGSEQYGVTSNFDGKPSATLGIFQNPDANAVDVMNGTRATMADLAKRFPP 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                  +   +  +E I + +  +I + + + +  ++  + W   L     + + +  T
Sbjct: 322 GLHYAVALDSTEFVKEAIYEVVRTLIEAILIVTVVTYLFLQNWRATLIPTIAVPIALIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSIN 766
            G  AL G  FN  ++  ++  +G  V+D ++V     +N  +L    +  +    +++N
Sbjct: 382 FGPMALLGFSFNTLSLLGLVLAVGLVVDDAIIVV----ENTERLMAEGMEPKPASREAVN 437

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
           E  G  + T++      +P+A   G        FA+ +A  ++++A  S+ +   +
Sbjct: 438 EIGGPVIATTLVLAALFVPVAFIPGLTGQLYNQFALTIAISVLISAVVSLTLTPAL 493



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 75/202 (37%), Gaps = 9/202 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFA 693
             V   I E+        +        +E I   +  +I +    +I+ ++          
Sbjct: 838  TVIAAIEELAEDLPRNTSIEWSEIAYQEKIAGNVAPLIFALGVFMIFCFLAGQYESLRLP 897

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  +    L I   +GF AL G+  ++     +L L+G +  + +++     ++++    
Sbjct: 898  LVILLATPLAIFGAVGFLALRGMPLDVFGQIGLLLLVGLAAKNAILLVS-FAEDLRQ--K 954

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
                 +    +    +   + TS A  +  +P+A+    G +   S    +  G++VA  
Sbjct: 955  GEDALEAARHATRMRMRPILMTSFAFILGSVPLAIASGAGANARLSMGTVVIGGLLVATI 1014

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             ++F+     +     R + A+
Sbjct: 1015 LTLFVTPVFYVAAERLRGEGAK 1036


>gi|329956748|ref|ZP_08297321.1| heavy metal efflux pump, CzcA family [Bacteroides clarus YIT 12056]
 gi|328524120|gb|EGF51196.1| heavy metal efflux pump, CzcA family [Bacteroides clarus YIT 12056]
          Length = 1048

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 70/595 (11%), Positives = 169/595 (28%), Gaps = 41/595 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENVLNSVSDLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSELPDDAENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP +L     +   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPYKLEAYNLSIETISSIIGAENKNIPGGNFDIGNETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  +++ + +                            +      I   +       
Sbjct: 232 EFDDSRQLADVVVGTY--------------------NGATVYLRDVARIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISKKVQDALPRLQKNLPSDVKLGVIVDTSENILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAISGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQASVHGTNEVAISVIASTLTMIAVFFPLTMVT 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G +    +     M   + +S   A+++   +    +   +K   +            D 
Sbjct: 452 GMSGVLFKQLGWMMCAIMFVSTVAALTLTPMLCSQLLRLQRKQSKVFRIFFGPIERTLDG 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +   + R   W V   +   +  +                       A   V L 
Sbjct: 512 LDNWYARMLNWAVRHRMSVLLGCVVFFILSLFCAKSIGTEFFPAQDNARIAVQLE 566



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 94/249 (37%), Gaps = 7/249 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V   +++++       N   +   +V  +    +SV  ++ ++    ++ + +P 
Sbjct: 252 VYLRDVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISKKVQDALPRLQKNLPS 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                  +   +     I      V+ + + ++I +++   +W   L    T+ L +  +
Sbjct: 312 DVKLGVIVDTSENILNTIDSLTETVLYALLFVVIVVFLFLGRWRATLIICITIPLSLIAS 371

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             + A+ G   N+ +++++   IG  V+D +VV + +             +       NE
Sbjct: 372 FIYLAISGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQASVHGTNE 428

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                + +++       P+ +     G +       M   + V+  +++ +   +   + 
Sbjct: 429 VAISVIASTLTMIAVFFPLTMVTGMSGVLFKQLGWMMCAIMFVSTVAALTLTPMLCSQLL 488

Query: 825 DWRAKNARI 833
             + K +++
Sbjct: 489 RLQRKQSKV 497



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 78/242 (32%), Gaps = 8/242 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              +L ++            ++  +V +      +     V            P       
Sbjct: 792  IKDLGTVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNTIIDKIEKPSDITIQI 851

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                          G +GV+I  I + I +  +F+   +    I ++   ++  L    +
Sbjct: 852  SGSYEDQQDSFRDLGTLGVLI-IILVFIVMAAQFESLTYPFILILSVPFAMSGVLMALFI 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++ ++   + LIG  V + +V+ D     +       S  + +  +    L   +
Sbjct: 911  TNTTLSVMSLLGSIMLIGIVVKNGIVLID---YTILCRERGQSVLNAVVTAGKSRLRPVL 967

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+M   + ++PMAV    G  +    AI +  G+ ++   ++     +         K 
Sbjct: 968  MTTMTTILGMIPMAVSTGQGSEMWSPMAIAVIGGLTISTILTLIYVPTMYCIFGGVGIKR 1027

Query: 831  AR 832
             R
Sbjct: 1028 QR 1029


>gi|221067154|ref|ZP_03543259.1| acriflavin resistance protein [Comamonas testosteroni KF-1]
 gi|220712177|gb|EED67545.1| acriflavin resistance protein [Comamonas testosteroni KF-1]
          Length = 1084

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 55/537 (10%), Positives = 144/537 (26%), Gaps = 51/537 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N     +L      +G+         +  +D+FP+      +           +    
Sbjct: 8   LKNPVLATMLMLAFVVLGVFS-----YQRLKVDQFPNIEFPVVV---------VTVEYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + +           +  + + + F         AD V   + 
Sbjct: 54  ASPEIVESEVTKKIEEAVNSVAGINALTSRSYEGTSVVIIEFQLHIDGRRAADDVREKVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ--------------VISHAIEQSMEI 166
            V   L  + K+  ++       ++       D                   AI  +   
Sbjct: 114 SVRPTLRDEVKEPRVIRFDPASTAVWSLAVLPDPHALHGETAPDGQSVTPPDAIALTSWA 173

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
            +    ++                 ++    DP  L     T  +++      N      
Sbjct: 174 DQVLKKRLENVRGVGAVNLVGATKREINVYLDPRALEAYAITPEQVAQAVRAENQDLPVG 233

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
               +           ++   E                       I              
Sbjct: 234 AIRSKAQERVVQIDARIQRPEEF--------------------ARIIVAYRNGAPIRVGQ 273

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
              +      +    +                 +    ++        +     P     
Sbjct: 274 LARVQDDAQELQTLALYNGSRTLLMSVQKAQDENTIEVVDGLNAAIKAIAPELPPGVRLQ 333

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
               N  A        + T    A L ++++F+ +   +  ++   ++ + +I T   + 
Sbjct: 334 AIADNSRAIRVGVDNVRQTLIEGALLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMY 393

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
             G ++ + ++  + L +GL +D  I+V E I    +  ++ + +   G       +  +
Sbjct: 394 WFGFSINMVTLMALSLCVGLLIDDAIVVRENIVRHVQMGKNAYQAAMEGTQEIGLAVLAT 453

Query: 467 NITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            ++ +   + + F G   G     F IT+  ++LISMF + ++   +          
Sbjct: 454 TLSIVAVFLPIGFMGGIIGQFFHEFGITIVAAVLISMFVSFTLDPMLSSVWHDPAIH 510



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + +LI       W   +    TL + +  T  F   FG   N+  + A+   +G 
Sbjct: 354 IEGALLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMYWFGFSINMVTLMALSLCVGL 413

Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
            ++D +VV    R+N+  +     +      +   E     + T+++     LP+   G 
Sbjct: 414 LIDDAIVV----RENIVRHVQMGKNAYQAAMEGTQEIGLAVLATTLSIVAVFLPIGFMGG 469

Query: 791 --GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             G     F I +   ++++   S  +   +    +D
Sbjct: 470 IIGQFFHEFGITIVAAVLISMFVSFTLDPMLSSVWHD 506



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 68/188 (36%), Gaps = 12/188 (6%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
             V   +K+ +  I              K   E     I  ++++ I + + +  +F  + 
Sbjct: 847  EVTADIKQALATIPMPPGYSYQFSGAAKNMAESFGYAISALMLAIIFIYMILASQFKSFL 906

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD--------R 743
              L  +T+L L +   +    +FG   ++ ++  V+ L+G    + +++ D        R
Sbjct: 907  QPLALMTSLPLTLIGVVLALMMFGSALSMFSIIGVVMLMGLVTKNAILLVDFAIRAREPR 966

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
              +        +   + +  +    L   + T++A    ++P+A     G          
Sbjct: 967  TNEASGQTEPGLPRNEALLLAARVRLRPILMTTLAMIFGMVPLAFAVTEGSEQRAPMGQA 1026

Query: 801  MAFGIVVA 808
            +  G++ +
Sbjct: 1027 VIGGVITS 1034


>gi|110639241|ref|YP_679450.1| acridine efflux pump [Cytophaga hutchinsonii ATCC 33406]
 gi|110281922|gb|ABG60108.1| acridine efflux pump [Cytophaga hutchinsonii ATCC 33406]
          Length = 1055

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 69/540 (12%), Positives = 153/540 (28%), Gaps = 41/540 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  +GLL             +FP   P               +V+   
Sbjct: 7   RRPALAIVISLVIMFMGLLAI-----KTLPKSQFPDIAPPM-------------IVVYAS 48

Query: 62  EDDFVNGFLQMYS----DELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVT 116
                +  L        ++  + +        +     +  + + F            V 
Sbjct: 49  YPGASSTVLTNSVLIPLEQAINGVPGMKYMFTTGASSGEANLQIVFNLGTDPNQALVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIG 175
             ++ +  +L    +   +V        ++                         + ++ 
Sbjct: 109 NRIEQMKMRLPPLVQLEGIVVQRLMPNMLMYVNVYGRDTSKVDMKYIFNYTYINMLSELQ 168

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             E              +    +P R+R    ++ ++       +        G    + 
Sbjct: 169 RVEGVGLARILGSRQYSMRIWLNPDRMRAYNISSDEVMKALDEQSIIGSPGRIGRADSKA 228

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S+  +Y++                    K  +    I                 +     
Sbjct: 229 SEAIEYVLTYPGR-------------YDKESQYNDVIIRATPEGEVLRLKDVATVELGSE 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                             +  A  +    IE   +    L+    P     +        
Sbjct: 276 YYDIYSNKDEFPSAAITINQAAGSNATEVIENLKVKLEELKKSFPPGIEYEINYDVSTFL 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV IV+F+ +   +  ++   ++ +++I    ++ L G  + L 
Sbjct: 336 DASTEEVVHTLRDAFILVSIVVFIFLGDWRSTIIPVLAVPVSLIGAFFMMQLFGLNINLI 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IG+ VD  I+V E +  +   K+ S + ++          I    +      
Sbjct: 396 TLFALVLAIGIVVDDAIVVVEAVHAKMEEKHCSPYIAVKEVLGEISGAIIAITLLMTSVF 455

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V + F  G      R FAITM  SI+IS   A+++   +   I++    +      L+RF
Sbjct: 456 VPVAFMTGPVGIFFRQFAITMASSIVISGVVALTLTPVLCAMILKNTHGQPRKKTMLNRF 515



 Score = 56.2 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 92/265 (34%), Gaps = 9/265 (3%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                              + + A    ++  ++         +      + ++     +
Sbjct: 232 IEYVLTYPGRYDKESQYNDVIIRATPEGEVLRLKDVATVELGSEYYDIYSNKDEFPSAAI 291

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAI 678
                     T V+E +K K+ E+           +   +S  L     + +  +  + I
Sbjct: 292 TINQAAGSNATEVIENLKVKLEELKKSFPPGIEYEINYDVSTFLDASTEEVVHTLRDAFI 351

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I    W   +  +  + + +        LFG+  NL  + A++  IG  V+D 
Sbjct: 352 LVSIVVFIFLGDWRSTIIPVLAVPVSLIGAFFMMQLFGLNINLITLFALVLAIGIVVDDA 411

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    K+     S    + + + E  G  +  ++      +P+A   G V    
Sbjct: 412 IVVVEAVH--AKMEEKHCSPYIAVKEVLGEISGAIIAITLLMTSVFVPVAFMTGPVGIFF 469

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPI 819
             FAI MA  IV++   ++ +   +
Sbjct: 470 RQFAITMASSIVISGVVALTLTPVL 494



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 73/251 (29%), Gaps = 10/251 (3%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +     Q       + +        S A         + I E+  
Sbjct: 790  YVKNDKGEQVPYSSFMSIKKTQGIYEINRYNMYTTSSIRCSPAAGYSSGEAIEAIKEVAA 849

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWI---RFKWYFALGAITTLILD 703
             +  +  +I    + ++ + +G   V I  I  + +Y+ +      +   +  I +L   
Sbjct: 850  ETLPKGYDIDWSGLQKDEVGRGNEAVYIFLIVLVFVYLVLAAQYESFILPMVVILSLPAG 909

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I          G+  ++    A++ L+G    + V++ +     +      +S  +   +
Sbjct: 910  IFGAFLLIKTAGMANDIYGQVALVMLVGLLGKNAVLIVE---YAVMKNNEGLSVLESAIE 966

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    ++P+    G   I   +       G++      + I   + 
Sbjct: 967  GAKARFRPILMTSFAFIAGLIPLIFAHGPGAIGNKTIGAASLGGMLFGTVFGVIIVPGLY 1026

Query: 821  LFIYDWRAKNA 831
                       
Sbjct: 1027 YIFGSIAEGRK 1037


>gi|167582428|ref|ZP_02375302.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis TXDOH]
          Length = 1100

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 159/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL   +   +       FP+ +                  L    
Sbjct: 10  RPVATTLLALGIALAGLFAFIKLPVSPLPQVDFPTIL--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVAEMTSMSSVGNARIVLQFNLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMV-VSLTSKTASPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSLSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +G H      N          D+                ++   +  + +  +
Sbjct: 217 --KGAIETGPHHYQLYTNDQASKAAQYKDLVIAYRNNAAVSLSDVSSVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        I       +   TIE        L A                    S +  
Sbjct: 275 MNGERAVLVILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG +L   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++        +           + + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLVVSLTLTPMMCARLLPEAHDPREEGRVARWLERGFEWMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +       +  +  +  +   Y +  KG     
Sbjct: 515 RGYERTLSWALRHPFTVLMTLVATIALNIALYIVVPKGFFPQQ 557



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +S + M++++++R  W   L     + + I  T G   L G   N  ++ A++   G+
Sbjct: 340 IAVSLVVMVVFLFLR-NWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+   S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLVVSLTLTP 483



 Score = 45.1 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 93/215 (43%), Gaps = 7/215 (3%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + E+    TIQ +     +  ++ ++   + ++ +
Sbjct: 869  VATTISFNLPPGVSLSKATQVIYQTMAEVGVPPTIQGSFQGTAQAFQQSLKDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LAAVYIVLGILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D     +       S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFA---IDASRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGSGDGAE 1045

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++V+   +++    + L++   R
Sbjct: 1046 MRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLR 1080


>gi|92113563|ref|YP_573491.1| acriflavin resistance protein [Chromohalobacter salexigens DSM
           3043]
 gi|91796653|gb|ABE58792.1| acriflavin resistance protein [Chromohalobacter salexigens DSM
           3043]
          Length = 1035

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 76/646 (11%), Positives = 184/646 (28%), Gaps = 44/646 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   ++   GL+      L +  +  +P+  P                     
Sbjct: 9   QRPVLATVFALLLIAFGLIA-----LERLPVQEYPAIDPPVV---------SIETNYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    ++  + ++   +   +    +++I ++F   R  E  A+ +   + G
Sbjct: 55  SADVVETRITQVLEDRIAGIEGIDLIESTSSDGESEIDITFNLDRDIEAAANDIRDRVSG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+  L  + +   +      +  I+      +       E +    R  +D+        
Sbjct: 115 VSDNLPEEAEPPEVEKADSSDDVIMWLSLTAEG--YTVPELTDYANRYLVDRFATQTGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +      + L     T   +       N             + +     
Sbjct: 173 RVRVGGGKEYAMRVWLKRNALAARGLTVTDVEDALRAENVELPAGFLESDSRQFTLRLPR 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   +                       +                 +           
Sbjct: 233 GFETAAD-------------------FRDLVIDQGDDGYLTRLSDVAGVEVGSVEERSLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       ++  +     +      A L +         +   +     G+ + 
Sbjct: 274 RGNGVPMVGLGIMKQSTANILEVSQGVKAEMARLESTLPDGMQMRLNFDSSVFVSGALTE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++V+F+ +   +  LV   ++ +++I T   L+  G TL L ++  +V
Sbjct: 334 VVATLFIAMGLVVVVIFLFLGNVRTTLVPAVTVPISIIGTFIALNAFGFTLNLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +   ++   +   G  +    +  + +  +   V L F 
Sbjct: 394 LAIGLVVDDAIVVLENVHRRMQLYGETPLVAAFRGTRQIGFAVIATTLVLIAVFVPLSFL 453

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMI-----FIIRYKKMKSIDINPLSRFF 532
            G   R    FA+T+  ++ IS   A+S+   M        +   +   ++     +   
Sbjct: 454 RGDIGRLFTEFALTLAAAVAISCLLALSLAPMMCSKVLDPRMHESRISHAVHTLLDATQR 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L    +           V  + L                  + +G   + V         
Sbjct: 514 LYRHVLVTLLRWRWACLVTFAALLGATVWLFGELPNEYTPQEDRGNFFILVNGPEGATFD 573

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
            ++  ++ ++   +   +    +N  VR     G+       + +V
Sbjct: 574 YMQDYMDEIEARLLPLVDEGEIRNISVRAPRGYGNIENFNDGIVIV 619



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 76/193 (39%), Gaps = 8/193 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      +  ++  + + + +    ++ +       E++    + + +  + + +++   
Sbjct: 297 SQGVKAEMARLESTLPDGMQMRLNFDSSVFVSGALTEVVATLFIAMGLVVVVIFLFLG-- 354

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    T+ + I  T      FG   NL  + A++  IG  V+D +VV + + + 
Sbjct: 355 -NVRTTLVPAVTVPISIIGTFIALNAFGFTLNLLTLLALVLAIGLVVDDAIVVLENVHRR 413

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
           M+LY    +      +   +     + T++      +P++   G +      FA+ +A  
Sbjct: 414 MQLY--GETPLVAAFRGTRQIGFAVIATTLVLIAVFVPLSFLRGDIGRLFTEFALTLAAA 471

Query: 805 IVVAASSSIFIAA 817
           + ++   ++ +A 
Sbjct: 472 VAISCLLALSLAP 484



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 79/213 (37%), Gaps = 9/213 (4%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + L+    D  +    L  +     E++P   + + +               + +I+  +
Sbjct: 809  ITLEANLADGASMGEALGYLNALADEVLPADAMIDYKGPSRDYQESSGATTFL-MIMGLL 867

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  + T+ L I+  L    L G   N+ +   ++ L+G +  + 
Sbjct: 868  VVFLVLAAQFESFVHPLVIMLTVPLAISGALLGLWLTGQSLNIYSQVGMVMLVGLAAKNG 927

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ +      +L    ++FRD +  +    L   + T++      +P+      G    
Sbjct: 928  ILIVEFAN---QLRDEGLAFRDALINASVTRLRPILMTAVTTMAGAVPLIFASGPGAETR 984

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                  +  G+  A   ++ +  P+   I   R
Sbjct: 985  LVIGTVIFSGVAAATLFTLLVV-PVAYDILARR 1016


>gi|269962265|ref|ZP_06176618.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833096|gb|EEZ87202.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1044

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 57/492 (11%), Positives = 130/492 (26%), Gaps = 36/492 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  +G +        Q  +  +P  +P   +                +
Sbjct: 9   QRPIFASMLSLLILIVGSISLF-----QLPVSEYPEVVPPTVVVT-------------AN 50

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   + +  +  L   +   E +     +   +    +T++FA     +    +V 
Sbjct: 51  YPGANPKIIAETVATPLEQEINGTENMLYMFSQATSDGRMTLTVTFALGTDLDKAQVQVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L    ++  +V         ++               +        D I  
Sbjct: 111 NRVNSALPRLPQTVQRLGVVAEKASPDLTMVVHIYSPDNSREVSYLANYSNLYIKDDIAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP  L     T   +       N        G +     
Sbjct: 171 LGGVGDVQLFGGGEYSMRLWLDPDALASRNLTAMDVVNAVRQQNQQVAAGSLGAQPSTID 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  Q L+  K  +  I              +    I      +          I      
Sbjct: 231 NQFQVLLNVKGRLENID-------------EFKDIIVQVGDNSALTRLKDVARIELGQNT 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L            +   +            A L           +         
Sbjct: 278 YALRALLNGKSAVAMPIFQRPGANAIELSNEVRDTMAELSKKFPQGVSYEIAYDPTVFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           GS +    T      LV+IV+ + +   +  ++   ++ ++++ T A++ +LG ++   S
Sbjct: 338 GSINAVISTLLEAIVLVVIVVTLFLQTWRASIIPIIAVPVSLVGTFAVMQMLGVSINTLS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +     K      +           I    +      + 
Sbjct: 398 LFGLVLAIGIVVDDAIVVVENVERNIHKGLKPLEATKKAMEEVTGPIIAIALVLCAVFIP 457

Query: 477 LFFFGGGAVRGF 488
             F  G + + +
Sbjct: 458 TTFITGLSGQFY 469



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 7/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   LG   L G + N+    A++ L+  +  + +++ +   +  
Sbjct: 903  SLKLPLAIILIVPMTIFSALGGVWLVGGDNNIFTQIALIVLVALACKNAILMVEFANE-- 960

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             L  +       I ++    L   + TS+A    V+P+ V G          M   +   
Sbjct: 961  -LKGSGKDHLSAILEACRLRLRPILMTSIAFTAGVVPL-VLGSGAGAEMRQAMGIAVFSG 1018

Query: 809  ASSSIF---IAAPILLFIYDWRAKNA 831
                 F   +  P+   +     K +
Sbjct: 1019 MVGVTFFGLLLTPVFYMLVSKGRKQS 1044


>gi|209518900|ref|ZP_03267712.1| acriflavin resistance protein [Burkholderia sp. H160]
 gi|209500702|gb|EEA00746.1| acriflavin resistance protein [Burkholderia sp. H160]
          Length = 1041

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 68/550 (12%), Positives = 153/550 (27%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +  +GL+      +       +P+                         
Sbjct: 10  RPVATLLLMIALVLVGLIAMRVLPVSSLPNVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +              + ITL F  S   +     V   +   
Sbjct: 56  PTVMATTVTAPLEVQLGEIPGLQQMTSYSSDGASVITLQFDLSLNLDIAEQNVQQAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NS L                   +L+   +        +       +   +I        
Sbjct: 116 NSYLPSGLPAPPTYAKVNPADQPILT-LAVTSKSMSLTQLEDVANNRLGTKISEVSGVGV 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   +  +  E DP +L         +       N S+    F    L  +      
Sbjct: 175 VTTSGGNVPAIRVEADPHKLAAYGLNIDDLRTLLSYVNVSQPKGNFDGPDLDYTINGNDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D  +     +                            +      + +    V  G  
Sbjct: 235 ITDPKDYMDTVIA--------------------YQNGSPVYMRDVARVSQAAQDVERGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T+         L +         V   + G    S +  
Sbjct: 275 YNGAPAIVLNVQRQPGANVIKTVNQIMKELPQLESTLPAGMKVTVVSDSTGVIRASVADA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   LV+ V+F+ +      ++   S+ +++I TLA++  L  ++   S+  +++
Sbjct: 335 AFELILAIVLVVAVIFVFLRNVPATVIPSISVPVSLIGTLAVMYQLNYSIDNLSLMALII 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD +I++ E I     +  +   +   G  +   TI    ++ +   + L F GG
Sbjct: 395 ATGFVVDDSIVMIENIVRYLEEGMTPLEAALEGAGQIGFTILSLTVSLIAVLIPLLFMGG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              R    FA+T+ ++I+IS   ++++V  +   ++R +  +           L    +A
Sbjct: 455 VIGRLFSEFAVTLAVTIVISAVVSLTVVPMLCARMLRAQAERHPSRFERISERLFDKTLA 514

Query: 540 IQFMRARFWG 549
                 R+  
Sbjct: 515 AYERGLRWVL 524



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 92/262 (35%), Gaps = 10/262 (3%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +T   N  I         V+A +      +R      Q      +         + L  Q
Sbjct: 227 YTINGNDQITDPKDYMDTVIAYQNGSPVYMRDVARVSQAAQDVERGAWYNGAPAIVLNVQ 286

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAML 681
                   + +  + K++ ++           V    +  +          +I++ + ++
Sbjct: 287 RQPGANVIKTVNQIMKELPQLESTLPAGMKVTVVSDSTGVIRASVADAAFELILAIVLVV 346

Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
             I++  +     +    ++ + +  TL          +  ++ A++   G+ V+D +V+
Sbjct: 347 AVIFVFLRNVPATVIPSISVPVSLIGTLAVMYQLNYSIDNLSLMALIIATGFVVDDSIVM 406

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SF 797
            + +   ++     ++  +   +   +     +  +++    ++P+   GG +      F
Sbjct: 407 IENI---VRYLEEGMTPLEAALEGAGQIGFTILSLTVSLIAVLIPLLFMGGVIGRLFSEF 463

Query: 798 AIPMAFGIVVAASSSIFIAAPI 819
           A+ +A  IV++A  S+ +   +
Sbjct: 464 AVTLAVTIVISAVVSLTVVPML 485



 Score = 45.8 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 86/218 (39%), Gaps = 6/218 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V++ +      + +  ++ +      I    +I ++         + +   +  +I + +
Sbjct: 809  VKISFNLAQGASLSTAVKEIHAAEQAIDLPPSITSSLQGATAAFEDSLSSEVYLLIAALV 868

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            A+ I + + ++ +   +  ++TL       L    L G++ ++  +  ++ LIG    + 
Sbjct: 869  AVYIVLGVLYESFIHPVTILSTLPSAGIGALLSLMLAGMDLDVIGIIGIVLLIGIVKKNA 928

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D             + R+ I ++        + T++AA +  LPM +    G  + 
Sbjct: 929  IMMVDFALD--AERNHGKAPREAIFEASLLRFRPILMTTLAAMLGALPMLLGTGTGSELR 986

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                + +  G+ ++   ++F    I LF     A+  R
Sbjct: 987  RPLGLAIIGGLTLSQMLTLFTTPVIYLFFDRMAARVNR 1024


>gi|327190835|gb|EGE57900.1| acriflavin resistance protein [Rhizobium etli CNPAF512]
          Length = 1050

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 73/517 (14%), Positives = 154/517 (29%), Gaps = 40/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ M+   GLL        Q  +  FP       I+            LE  
Sbjct: 9   RNPVPAILLFVMLTVGGLLA-----FKQLPIQNFPDMDLPT-IN--------VTATLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L        ++      I +SF   +  E   ++V   +  
Sbjct: 55  APAQLETEVARKIEDSLAALSYLDHITTTITDGSVSIKVSFKLEKDSETALNEVRNAVDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    +   +   T +   +V        +     E S          +       
Sbjct: 115 VKGDLPAQMETPSVSKVTVQSSPLVTYAVRSTALNE--TELSWFADNDLTKALLSVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      I  ++  + DP+ +  L  T A +S           G +  +   R +     
Sbjct: 173 QVNRIGGIDREVHVDLDPTTMASLGVTAATVSSQLKAVQTDTSGGLGEIGGTRQTLRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     + G                    +       ++       +I    A      
Sbjct: 233 ALPSVEALKG--------------------LKIPLANGQQVRLDDVASITDSFAERSSMA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           S +     A   A    A              +G  +G+   
Sbjct: 273 YLDGKPVIAVEIKRSNGFSDSGVAA-AVDQAVKAFAAKHSNAQIDEAYSTIGPIIGNYDG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+++ +   +  +++  ++ L+VI T  ++   G +L + ++  + 
Sbjct: 332 SMHMLYEGAILAIIVVWLFLRDWRATILSAVALPLSVIPTFLVMYFAGFSLNIVTLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    +  +    +     +     +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIARHLQMGKRPIDAALEAANEIGLAVIATTFTLVSVFLPTAFMS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFII 515
           G      R F IT  +++L S+  A  +   M  + +
Sbjct: 452 GIPGLIFRQFGITAAVAVLASLVVARLLTPMMAAYFM 488



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 78/258 (30%), Gaps = 15/258 (5%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V  +    ++   +   S+   D         K            +V Q       K  
Sbjct: 252 QVRLDDVASITDSFAERSSMAYLDGKPVIAVEIKRSNGFSDSGVAAAVDQAVKAFAAKHS 311

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             +I    +     I     S  ++ +G      + +A+++       W   + +   L 
Sbjct: 312 NAQIDEAYSTIGPIIGNYDGSMHMLYEG------AILAIIVVWLFLRDWRATILSAVALP 365

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +  T       G   N+  + A+  ++G  V+D +V  + +    +         D  
Sbjct: 366 LSVIPTFLVMYFAGFSLNIVTLLALSLVVGILVDDAIVEIENI---ARHLQMGKRPIDAA 422

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            ++ NE     + T+       LP A   G        F I  A  ++ +   +  +   
Sbjct: 423 LEAANEIGLAVIATTFTLVSVFLPTAFMSGIPGLIFRQFGITAAVAVLASLVVARLLTPM 482

Query: 819 ILLFIYD---WRAKNARI 833
           +  +         K+ RI
Sbjct: 483 MAAYFMKAHPTEEKDGRI 500



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/179 (19%), Positives = 74/179 (41%), Gaps = 8/179 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
            + S EL +   + + I    +   + + F  +   L  +  L L +   L    L G  F
Sbjct: 837  QRSSELFQSFALAMAIGVFCIYAVLVVLFHDFLQPLTLLMALPLSLGGALLPLVLTGTSF 896

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++ AV  +L L+G    + +++   +   +      +S  D +  + ++     V T++A
Sbjct: 897  SMPAVIGLLMLMGVVTKNSILL---IEYAIMSRQRGMSRFDALVDACHKRARPIVMTTIA 953

Query: 779  AFISVL--PMAVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                +L   +++ GG        AI +  G+VV+   S+ +   I  F+ D+     R+
Sbjct: 954  MASGMLPAALSLMGGDSSFRQPMAIVVIGGVVVSTLLSLIVIPVIFTFVDDFEQILKRV 1012


>gi|326405121|ref|YP_004285203.1| efflux system protein [Acidiphilium multivorum AIU301]
 gi|325051983|dbj|BAJ82321.1| efflux system protein [Acidiphilium multivorum AIU301]
          Length = 1049

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 80/685 (11%), Positives = 187/685 (27%), Gaps = 46/685 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   G++      + +  + +FPS +P               + +    
Sbjct: 9   RPRFAMVIAIVITIAGIIA-----MTRIPVAQFPSIVPPA-------------VQVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +     + +   +        +S     +    +T++F      +     VT 
Sbjct: 51  PGASAQVVNDTVAEPIEQQINGLSDEIYYSSTTANDGSYNLTVTFKLGSNPDIDTVNVTN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   ++L  + +K  L         +              ++ S  +    ++ +G  
Sbjct: 111 AVQQALTQLPAEVQKEGLTVRKRSASVLEFMFFYSPDNKLTPLQISNYVKINVLNPLGRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +      +RL QL  T A +       N        G+  +    
Sbjct: 171 PGVGQAFMFGEQDYSMRVIFSTARLAQLGLTPADLISAIQDQNTQAPVGTIGLMPIAGKQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V+ +  ++                +    +                 I       
Sbjct: 231 QYQLSVQTEGRLTSAR-------------QFGNIVIRGNRDGSLLRLKDVAKIRLGPQSE 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +   T        A L         +     +      
Sbjct: 278 NQVDRINGHPGVAIGVFLSPGANAVATSGRVSAEIARLSKRFPASLASKTVYNSSSFVSD 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S    T A    LV++V+F  +   +  LV    + + ++ + A +  LG +    ++
Sbjct: 338 TISEVIKTLAEAFALVVLVVFFFLGSWRAALVPTIVVPIALLGSFACMLALGYSANTVTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +V+  GL VD  I+V E I     +    S   +  +  ++  + I    +  L   V
Sbjct: 398 LALVVATGLVVDDAIVVVENIERVMAERPELSPREAAKVAMAQIQAPIIAIMLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINP 527
              F  G +      FA+ +  ++LIS   A+++  A+   +       +  M  +    
Sbjct: 458 PTAFIPGLSGLLFTQFAVAISTAMLISALNALTLSPALCAILLRRGEHGHGIMARVLDFI 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     I     R+    + I        +    T G     + +G + +      
Sbjct: 518 ERTRAGYSRLIGRLVARSVLGLMVIVAFGVAAFLLARITPGGFLPDEDQGALFIQATLPP 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L    +  + L     +                          ++  +K       P
Sbjct: 578 GASLQRTDAMGQKLAKMIHTLPQVQDVIAINGYSILDSATEPNALFMVAHLKPFAQRPGP 637

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
            +++Q        +  ++    IV 
Sbjct: 638 KNSVQAVIRKIFAMGSQVQGANIVA 662



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 54/141 (38%), Gaps = 4/141 (2%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  AL     + + +  +       G   N   + A++   G  V+D +VV + + + +
Sbjct: 363 SWRAALVPTIVVPIALLGSFACMLALGYSANTVTLLALVVATGLVVDDAIVVVENI-ERV 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 +S R+    ++ +     +   +      +P A   G        FA+ ++  +
Sbjct: 422 MAERPELSPREAAKVAMAQIQAPIIAIMLVLLSVFVPTAFIPGLSGLLFTQFAVAISTAM 481

Query: 806 VVAASSSIFIAAPILLFIYDW 826
           +++A +++ ++  +   +   
Sbjct: 482 LISALNALTLSPALCAILLRR 502



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 66/184 (35%), Gaps = 9/184 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF--- 711
                     +   KG    +     +  Y+++   +   +  +  L+  +    G     
Sbjct: 854  YDWTSTAYLQQQAKGQAAYVFILSLIFAYLFLVALYESWIIPVPVLLSVVVGVFGAMLGI 913

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             L G+  +L A   ++ LI  +  + +++ +  ++        +  R+            
Sbjct: 914  VLGGLTIDLYAEIGLVVLIALAAKNGILIVEFAKE---RREEGMGIREAAVLGARMRFRA 970

Query: 772  SVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + TS+A    +LP+ V  G+      S   P+  G++ A+   IF+   + +     R 
Sbjct: 971  VMMTSIAFIFGLLPLVVATGAAQITRRSLGTPVFAGMIFASGIGIFVIPLLYVTFETLRM 1030

Query: 829  KNAR 832
            + +R
Sbjct: 1031 RVSR 1034


>gi|117619219|ref|YP_855829.1| AcrB/AcrD/AcrF family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560626|gb|ABK37574.1| AcrB/AcrD/AcrF family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1039

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 78/676 (11%), Positives = 197/676 (29%), Gaps = 44/676 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L +++   GL+      + +    + PS                   + E  
Sbjct: 9   RRPLVAVVLSALLTVFGLVAFSKLTVREMPDVQTPSVSITT--------------MYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +          R+ ++ IT+ F            V   +  
Sbjct: 55  APAVMESQVTKPIEDQLSGISGIKNINSVTRKGRSVITVEFKLGWNMVEGISDVRDAISR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  + L+          V    +  Q+   A+  +    R  +D + + +   
Sbjct: 115 ARPKLPDEVDEPLVTKDNGNGDVAVWLNFSSTQMDRTAM--TDYANRVLVDPLSLVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S  +   +     P+ +     T A +       N    G                
Sbjct: 173 EVSLSGDLTQVMYVRLRPADMAARGVTVADVQDALKRENIELPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +  + + +    A                    +  +     ++           
Sbjct: 219 -----IRNNSMTMAVQIARLYHTAADFQALQVRTATNGQSIYLADIADVEVGAKNEDSAY 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     +      A ++          V+  +      +   
Sbjct: 274 QRNGRESLGIGIVAQSTANPLAVAQGVEKKMAEMQRFLPEGAALEVDYDSTIFIKQAIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI A LV+ VL++ +  G+  L+   ++ +++I        LG ++ L ++  ++
Sbjct: 334 VYETLAICAVLVVAVLYLFLGQGRTTLIPAITVPVSLISAFIGAWYLGFSINLITLLALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I    ++ +    +   G       +  +    ++  V + F  
Sbjct: 394 LAIGLVVDDAIVVVENIHHHLQRGEQPLLAAWHGTREVGFAVIATTAVLVMVFVPIAFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-----IDINPLSRFFL 533
           G        FAI + L++L S   A+++  AM  +++R     +     +D         
Sbjct: 454 GMVGRLFTEFAILLSLAVLFSSLIALTLTPAMGSWLMRSVDRPNRLTAALDRGLGWVETH 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +      +R+  + + +                   + +G + + V       +  
Sbjct: 514 YRRLLGWMLHHSRWTPLVLVLCLGGIGALFAQLPTSLTPTEDRGVLYVFVKGAEGTSIER 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQ-YQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
           ++ N++ ++   +        +        +  G       ++++      +       +
Sbjct: 574 MKRNMQQVEAAIMPLLGKGVVQAMSFSTPAFGRGGDQTGMAIIQLTDWAERDETATEFAK 633

Query: 653 NTEIVGPKISRELIRK 668
           +       I   +IR 
Sbjct: 634 SLSGRLAGIPDVMIRT 649



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 93/279 (33%), Gaps = 7/279 (2%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            ++ +      +   DF+          + + L+ +       +  D ++Q    E   +
Sbjct: 224 MTMAVQIARLYHTAADFQALQVRTATNGQSIYLADIADVEVGAKNEDSAYQRNGRESLGI 283

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII-SA 677
             +     + +A  + +E    ++   +P       +       ++ I +    + I + 
Sbjct: 284 GIVAQSTANPLAVAQGVEKKMAEMQRFLPEGAALEVDYDSTIFIKQAIDEVYETLAICAV 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + + +      +    L    T+ + +          G   NL  + A++  IG  V+D 
Sbjct: 344 LVVAVLYLFLGQGRTTLIPAITVPVSLISAFIGAWYLGFSINLITLLALILAIGLVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
           +VV + +                      E     + T+    +  +P+A   G V    
Sbjct: 404 IVVVENIH---HHLQRGEQPLLAAWHGTREVGFAVIATTAVLVMVFVPIAFMDGMVGRLF 460

Query: 796 -SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FAI ++  ++ ++  ++ +   +  ++     +  R+
Sbjct: 461 TEFAILLSLAVLFSSLIALTLTPAMGSWLMRSVDRPNRL 499



 Score = 43.9 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 36/91 (39%), Gaps = 6/91 (6%)

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           E ++ +   ++ LIG    + +++ + +    +L      F + I       L   + TS
Sbjct: 901 EMSIYSQIGMIMLIGMVTKNGILIVEFIN---QLRQRGEGFDEAIIAGSVRRLRPILMTS 957

Query: 777 MAAFISVLPMAVWGG---SVIGSFAIPMAFG 804
           + A I  +P+ +  G       S    + FG
Sbjct: 958 LTAIIGAVPLMLSMGAGYESRMSVGTVVFFG 988


>gi|171912827|ref|ZP_02928297.1| AcrB/AcrD/AcrF family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 1045

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 66/606 (10%), Positives = 168/606 (27%), Gaps = 53/606 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +   +  +L  +   +G L        +  +DRFP                   +V  L+
Sbjct: 10  KRPVFATVLVLVFVVVGAL-----GYTRLPVDRFPKVDFPT-----------VSVVTRLD 53

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 +   +    +E  + +           +  +++ ++F   +  +  A +V   +
Sbjct: 54  GATPKEIETEITDKIEEAVNTVSGIDELRSVSTEGISQVLVAFNLDKKVDVAAQEVRDRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +   L  D    ++         I+      ++ +    E + +++R+   Q+     
Sbjct: 114 NRILPNLPEDVDTPIVEKLDPDAEPIMSISLVAEKPVREISELADKVVRR---QLESVAG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q         Q+    DP RL+        +       N                   
Sbjct: 171 VGQVTLLGARKRQINIWMDPVRLKAFDLAAVDVERALRQQNVQIPSGNVKGN-------- 222

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              VE  + + G   +             +  I   E             +      +  
Sbjct: 223 --GVEAGLRVLGKAQSV----------DDIGRIVVREKDGGLVRLADVARVEDGAEDLQT 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                           ++  +    ++        +R          +   N      S 
Sbjct: 271 VARRNGQPTVTLSIRKQSGENTIAVVDAVKERLEEIRPTLPEGYKIEIVRDNSLIIRTST 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K    + +    +++   +  G+  L++  +I  ++I +  ++ +   TL   S+  
Sbjct: 331 HAVKEHLVLGSIFAALIVLFFLGNGRATLISALAIPTSIIASFGVMWVGNVTLNSISLVA 390

Query: 420 IVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + L +G+ +D  I+V E I    + KN+S   +   G       +  + ++ L   + + 
Sbjct: 391 LALAVGIVIDDAIIVVENIFRHLHEKNESPHDAAINGTKEIGLAVMATTLSLLAVFIPVA 450

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIF--------IIRYKKMKSIDINP 527
           F     G  +  F +TM  +I +S+  + ++  +M            I       ++I  
Sbjct: 451 FLSGIVGKFLSSFGLTMAFAIAVSLLVSFTLAPSMSARMLKITKPNWIERGMTYLVNIFY 510

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                L    + +         +            +            +    + +    
Sbjct: 511 TPLEGLYMWMLRLSMRHRWIVVLACVGALYSVGPMMGKVQKALLPPAEEAEFLVNLRTAE 570

Query: 588 PVDLSV 593
              L  
Sbjct: 571 GTTLEA 576



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 42/225 (18%), Positives = 82/225 (36%), Gaps = 11/225 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V L  +         V++ VK+++ EI P         +       +IR     V
Sbjct: 275 NGQPTVTLSIRKQSGENTIAVVDAVKERLEEIRPTLPEGYKIEIVRDN-SLIIRTSTHAV 333

Query: 674 -----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
                + S  A LI ++        L +   +   I  + G   +  +  N  ++ A+  
Sbjct: 334 KEHLVLGSIFAALIVLFFLGNGRATLISALAIPTSIIASFGVMWVGNVTLNSISLVALAL 393

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  ++D ++V + +     L+  + S  D       E     + T+++     +P+A 
Sbjct: 394 AVGIVIDDAIIVVENIF--RHLHEKNESPHDAAINGTKEIGLAVMATTLSLLAVFIPVAF 451

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G V   + SF + MAF I V+   S  +A  +   +      N
Sbjct: 452 LSGIVGKFLSSFGLTMAFAIAVSLLVSFTLAPSMSARMLKITKPN 496



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 79/221 (35%), Gaps = 16/221 (7%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                 R Q     + A       +   I  IV    +     VGP    + ++K  +  +
Sbjct: 799  NRADRRRQVTIMANPAPGVGESQIADAIETIVKKQNLPPDYEVGPTGRSKELKKAGLAFV 858

Query: 675  ISAIAMLIYIWIRF-----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +     I++++        W      +  L L +   +    LF    N+ +V  +L L
Sbjct: 859  TAFGMAFIFMYLILAAQFESWLHPFTILLALPLTLPFAILSLLLFNQSLNIFSVLGILVL 918

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
             G    + ++  D      +L    ++  + I ++  + L   + T++A    ++P+   
Sbjct: 919  FGMVKKNGILQIDH---TNQLRERGMNRLEAILQANKDRLRPILMTTLAFVAGMVPLMFS 975

Query: 790  -GGSVIGSFAIPMAFGIVVA--ASSSI--FIAAPILLFIYD 825
             G     + A     G+++     S +   +A P+   ++D
Sbjct: 976  KGVGAAFNNATA---GVIIGGQMMSLLLTLLATPVFYSLFD 1013


>gi|148261631|ref|YP_001235758.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Acidiphilium
           cryptum JF-5]
 gi|146403312|gb|ABQ31839.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidiphilium cryptum JF-5]
          Length = 1049

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 67/528 (12%), Positives = 155/528 (29%), Gaps = 41/528 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   G++      + +  + +FPS +P               + +    
Sbjct: 9   RPRFAMVIAIVITIAGIIA-----MTRIPVAQFPSIVPPA-------------VQVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +     + +   +        +S     +    +T++F      +     VT 
Sbjct: 51  PGASAQVVNDTVAEPIEQQINGLSDEIYYSSTTANDGSYNLTVTFKLGSNPDIDTVNVTN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   ++L  + +K  L         +              ++ S  +    ++ +G  
Sbjct: 111 AVQQALTQLPAEVQKEGLTVRKRSASVLEFMFFYSPDNKLTPLQISNYVKINVLNPLGRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +      +RL QL  T A +       N        G+  +    
Sbjct: 171 PGVGQAFMFGEQDYSMRVIFSTARLAQLGLTPADLISAIQDQNTQAPVGTIGLMPIAGKQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  V+ +  ++                +    +                 I       
Sbjct: 231 QYQLSVQTEGRLTSAR-------------QFGNIVIRGNRDGSLLRLKDVAKIRLGPQSE 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +   T        A L         +     +      
Sbjct: 278 NQVDRINGHPGVAIGVFLSPGANAVATSGRVSAEIARLSKRFPASLASKTVYNSSSFVSD 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S    T A    LV++V+F  +   +  LV    + + ++ + A +  LG +    ++
Sbjct: 338 TISEVIKTLAEAFALVVLVVFFFLGSWRAALVPTIVVPIALLGSFACMLALGYSANTVTL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +V+  GL VD  I+V E I     +    S   +  +  ++  + I    +  L   V
Sbjct: 398 LALVVATGLVVDDAIVVVENIERVMAERPELSPREAAKVAMAQIQAPIIAIMLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              F  G +      FA+ +  ++LIS   A+++  A+   ++R  + 
Sbjct: 458 PTAFIPGLSGLLFTQFAVAISTAMLISALNALTLSPALCAILLRRGEH 505



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 54/141 (38%), Gaps = 4/141 (2%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  AL     + + +  +       G   N   + A++   G  V+D +VV + + + +
Sbjct: 363 SWRAALVPTIVVPIALLGSFACMLALGYSANTVTLLALVVATGLVVDDAIVVVENI-ERV 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                 +S R+    ++ +     +   +      +P A   G        FA+ ++  +
Sbjct: 422 MAERPELSPREAAKVAMAQIQAPIIAIMLVLLSVFVPTAFIPGLSGLLFTQFAVAISTAM 481

Query: 806 VVAASSSIFIAAPILLFIYDW 826
           +++A +++ ++  +   +   
Sbjct: 482 LISALNALTLSPALCAILLRR 502



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 66/184 (35%), Gaps = 9/184 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF--- 711
                     +   KG    +     +  Y+++   +   +  +  L+  +    G     
Sbjct: 854  YDWTSTAYLQQQAKGQAAYVFILSLIFAYLFLVALYESWIIPVPVLLSVVVGVFGAMLGI 913

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             L G+  +L A   ++ LI  +  + +++ +  ++        +  R+            
Sbjct: 914  VLGGLTIDLYAEIGLVVLIALAAKNGILIVEFAKE---RREEGMGIREAAVLGARMRFRA 970

Query: 772  SVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + TS+A    +LP+ V  G+      S   P+  G++ A+   IF+   + +     R 
Sbjct: 971  VMMTSIAFIFGLLPLVVATGAAQITRRSLGTPVFAGMIFASGIGIFVIPLLYVTFETLRM 1030

Query: 829  KNAR 832
            + +R
Sbjct: 1031 RVSR 1034


>gi|114565136|ref|YP_752650.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114336429|gb|ABI73811.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Shewanella frigidimarina NCIMB 400]
          Length = 1053

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 74/699 (10%), Positives = 192/699 (27%), Gaps = 52/699 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFFISGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   ++
Sbjct: 54  NPKIIAETVASPLEQEINGVENMLYMSSQATSDGRMTLTITFAIGTDVDLAQTQVQSRVE 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S   + +  D++      
Sbjct: 114 RAKPRLPEEVQRLGIVTEKSSPSLTMVVHLTSPDDRYDMLYLSNYAVLKVKDELARITGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP+++  +  + + +       N        G +   DSD  Q
Sbjct: 174 GAVRVFGAGDYSMRVWLDPNKVAAIGLSPSNIVAAIREQNQQAAAGSLGAQPSGDSD-FQ 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L+  K  +S +              +    I       +         +    +     
Sbjct: 233 LLINVKGRLSNVE-------------EFEDIIVKVGDQGQITRLKDVARVELGASTYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L           +         GS  
Sbjct: 280 SMLDNKDAAALPVFQASGSNAIQISDDVRSKMAELSKSFPEGLTYDIVYDPTVFVRGSIK 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + L+G +L   S+ G+
Sbjct: 340 AVVQTLVEALLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLMGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNISDGLSPVAATQKAMKEVTGPIIATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------------- 522
               G   + FA+T+ +S  IS   ++++  A+   +++    K                
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKGHHEKKDMLTRGMDKLLGGWL 519

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +        +      +     RF  V   +   +  +  L       G       Q  
Sbjct: 520 FNPFNRMFARMSNGYGWLVKKIIRFGAVIGILYIGLVGLTGLQFANTPTGYVPGQDKQYL 579

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +   +  D + +      ++       +  G  + +             T         +
Sbjct: 580 IAFAQLPDAASLDRTEAIVKEMSRIALDQPGVAHAVAFPGLSINGFTNSTN-----SAIL 634

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
              +     +    +        + +    +  + IA+ 
Sbjct: 635 FTPLDDFADRKDPSLSAGAIAAALNQKFASINGAFIAIF 673



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 81/254 (31%), Gaps = 17/254 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V +    +   S     +   N                   AQ  + +++ + + 
Sbjct: 800  NQGEMVPIGSFINVTNSSGPDRVMHYNGFTTAELNGGAAPGFSSGEAQAAIEKILAETLP 859

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTL 700
                       E       + L        I   I +L+++ +          +  I  +
Sbjct: 860  NG------MTYEWTEITYQQILAGNAG-AYIYPLIILLVFMVLAAQYESLSLPIAIILII 912

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             + +   L    ++G + N+     ++ L+G +  + +++ +  ++   L    +   + 
Sbjct: 913  PMTLLSALTGVLIYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKE---LQDDGMEPLEA 969

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS-SSIF--IAA 817
            I ++    L   + TS+A  + V+PM V+           M   +       +IF  I  
Sbjct: 970  ILEAGRLRLRPILMTSIAFIMGVVPM-VFSSGPGSEMRQAMGVAVFSGMIGVTIFGLILT 1028

Query: 818  PILLFIYDWRAKNA 831
            P+  +    R KN 
Sbjct: 1029 PLFYYALAKRGKNK 1042



 Score = 42.8 bits (98), Expect = 0.26,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 79/228 (34%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L++     +      G     +    +   +       E +   I     +
Sbjct: 273 ASTYALRSMLDNKDAAALPVFQASGSNAIQISDDVRSKMAELSKSFPEGLTYDIVYDPTV 332

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + V   +   L+   +V V+               W  ++  +  + + +  T 
Sbjct: 333 FVRGSIKAVVQTLVEALLLVVLVVVLFLQT-----------WRASIIPLVAVPVSLVGTF 381

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K++ E 
Sbjct: 382 AFMHLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNISD---GLSPVAATQKAMKEV 438

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            G  + T++      +P A      G     FA+ +     ++A +S+
Sbjct: 439 TGPIIATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|193215385|ref|YP_001996584.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Chloroherpeton thalassium ATCC 35110]
 gi|193088862|gb|ACF14137.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chloroherpeton thalassium ATCC 35110]
          Length = 1048

 Score =  160 bits (404), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 79/621 (12%), Positives = 169/621 (27%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++      +G++      +    ++ +P   P              ++      
Sbjct: 8   RPVLSTVISIFFVVLGII-----GIYTLPVEEYPDIAPPT-----------INVSTTYSG 51

Query: 63  DDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTLF 118
            D     +      L   +   E +   +          I + F      +     V   
Sbjct: 52  ADANA-VMNSVIIPLEEQINGVEDMTYMTSSASNGGSASINVFFKQGVDPDIATVNVQNR 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +   NS +  +  +N +    ++   I++ Q          +          + QI    
Sbjct: 111 VSKANSLMPSEVTQNGITVQKQQSSIILMIQLTSTNSDYDKVFLQNYAQINLVPQIKRVS 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +     P  +     T+A++       N        G    R    
Sbjct: 171 GVGNVQVFGGGDYAMRIWLKPDVMMSYGVTSAEVLAALQDQNIEAAPGELGE---RGDQT 227

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            QY ++    +              KT +   +I      +          I        
Sbjct: 228 FQYTLKFTGRL--------------KTVEEFENIIIRSQESSVLRLKDVAKIELAAQAYN 273

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                    +     S  A  +    I     L         P         +      +
Sbjct: 274 VIAKGNGLPVATFAISQTAGSNAQDIITEVKALMEEAGKELPPGVTYNYMMDSSEFLNVA 333

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T   V  LV +++ + +   +  L+   ++ ++VI T   LSL G T+ L ++ 
Sbjct: 334 IGKLVSTLFEVFVLVFLIILVFLQNFRATLIPAVAVPVSVIGTFFFLSLFGFTINLLTLF 393

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS--LDMGFSRAYSTIFDSNITALIATVV 476
            +VL IG+ VD  I+V E +  +    +    +  +      A + I  + ++  +   V
Sbjct: 394 ALVLAIGMVVDDAIVVVEAVYAQIDAGEKDVKAATIKTLGEIAPAIISMTLVSVAVFLPV 453

Query: 477 LFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F  G      + F +T+ +SILIS   A+++  A+    ++  +            F  
Sbjct: 454 SFISGTSGEFYKQFGLTLAVSILISGVNALTLSPALSAMFLKAHEKPKAGDKNPIHIFYN 513

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  +    +  +   +         L T  L     F     + +L    V     
Sbjct: 514 NFNKFFDWATNGYRSILEFLSHKNRRWISLATVAL---FSFIMYFLITILPPGFVPQEDS 570

Query: 595 RSNLESLQIGDISFQNFDGEK 615
            + L  + +   S        
Sbjct: 571 GAALGMVSLSPGSSLERTDST 591



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 88/243 (36%), Gaps = 6/243 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V     + Q  ++  +            Q    ++      ++ + ++  + +P     
Sbjct: 261 DVAKIELAAQAYNVIAKGNGLPVATFAISQTAGSNAQDIITEVKALMEEAGKELPPGVTY 320

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
           N  +   +     I K +  +    + + + I +  + +   L     + + +  T  F 
Sbjct: 321 NYMMDSSEFLNVAIGKLVSTLFEVFVLVFLIILVFLQNFRATLIPAVAVPVSVIGTFFFL 380

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +LFG   NL  + A++  IG  V+D +VV + +   +         +    K++ E    
Sbjct: 381 SLFGFTINLLTLFALVLAIGMVVDDAIVVVEAVYAQIDAGEK--DVKAATIKTLGEIAPA 438

Query: 772 SVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++ +    LP+  + G  G     F + +A  I+++  +++ ++  +         
Sbjct: 439 IISMTLVSVAVFLPVSFISGTSGEFYKQFGLTLAVSILISGVNALTLSPALSAMFLKAHE 498

Query: 829 KNA 831
           K  
Sbjct: 499 KPK 501



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/329 (10%), Positives = 93/329 (28%), Gaps = 22/329 (6%)

Query: 512  IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
                + +   +I     +   L     A+Q      +    +       + +        
Sbjct: 718  PRFPQKQVEANIPKIKDAGLTLSEVMTALQMNVGSLYASNFNTYGKQYRVIVQAAPEYRN 777

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
             +D    I +   +     ++   +  +      ++  N        +   +Q G +   
Sbjct: 778  KVDDLNNIYMETSSGEMSPITEFITLSDVTGPQSLARFNLYSSMELTIIPNFQAGYTSGD 837

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRF 688
                              +    E VG   +          +I     + +Y+    +  
Sbjct: 838  VFKAIDEIGLPLGYSYEYSGMTREEVGSSSN--------TSLIFILCVVFVYLLLAALYE 889

Query: 689  KWYFALGAITTLILDITKTLGFFALF-----GIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
             +   L  I +L + +     F  +      GI  N+    +++ LIG      +++ + 
Sbjct: 890  SYILPLAVIFSLPIGLAGVFLFIYISMITGSGIANNIYVQISMIMLIGLLAKTAILIVE- 948

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIP 800
                ++     +   +         L   + T++   I ++P+A+  G   I   S  I 
Sbjct: 949  --YALQRRQQGMDIVEAAIGGAVARLRPVMMTALTCIIGLIPLAIATGAGAIGNRSIGIS 1006

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G+++       +   + +       +
Sbjct: 1007 AVGGMMLGTFIGTLVVPVLFIIFQSLHER 1035


>gi|317492806|ref|ZP_07951230.1| AcrB/AcrD/AcrF family protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918928|gb|EFV40263.1| AcrB/AcrD/AcrF family protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 1032

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/597 (11%), Positives = 164/597 (27%), Gaps = 39/597 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +             L     + +   +    +     +    
Sbjct: 34  GFKLLPIAPLPQVDYPVIM---------VSASLPGASPETMASSVATPLERALGRIAGIS 84

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               S      +I + F  +R     A  V   +    S L                 + 
Sbjct: 85  EMTSSSSLGSTRIIIQFDFNRDINGAARDVQAAINAAQSLLPSGMPSRSSYRKANPSDAP 144

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++    +        +       Q   +I   +           L  +  E +P  L   
Sbjct: 145 IMI-MTLTSDTYDQAKLYDIASTQLAQKIAQVDGVGDVSVGGSSLPAVRIELNPEALFNQ 203

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +       N  +          R        ++                     
Sbjct: 204 GVSLDNVRTSIANANVRRPQGSIEANDKRWQVQANDEIKTA------------------- 244

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                N+   +  V +  +  A      +    A  +   T+
Sbjct: 245 -QDYQPLIIHYNNGSAVRLSDVANVKDSVENVRNAGMTNAKPAILIMIRRSADANIIETV 303

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +         RA         V +        S    + + AI  GLV++V+F+ +  G+
Sbjct: 304 DRIRAQIPEFRALIPASIDLQVAQDRSPTIRASLDEVESSLAIAVGLVIMVVFLFLRSGR 363

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ +++I T A + L   +L   S+  + +  G  VD  I+V E I       
Sbjct: 364 ATLIPAVAVPVSLIGTFAAMYLCDFSLNNLSLMALTIATGFVVDDAIVVLENISRHVEAG 423

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFT 502
                +  +G      T+   +++ +   + L       G   R F++T+ ++I IS+  
Sbjct: 424 MKPKKAALIGAREVGFTVLSMSLSLIAVFIPLLLMSGLPGRLFREFSVTLSVAIGISLVV 483

Query: 503 AISIVRAMMIFIIRYKKMKS------IDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           ++++   M  ++++ +  +            L         +      AR+  + +    
Sbjct: 484 SLTLTPMMCAYLLKQRPSRHQERIRGFGKLLLKLQQGYGKSLRWVLDHARWVLLILIATI 543

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +     +      +     G +   + A++ +    +R  L+       +  + D 
Sbjct: 544 GLNVWLYISIPKTFFPEQDVGRLMGFIQADQSISFQAMRGKLQDFMKIVRNDPDVDN 600



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 76/218 (34%), Gaps = 8/218 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVII 675
            ++R            R+   + +    I     +Q  +   P I   L   +  + + +
Sbjct: 289 IMIRRSADANIIETVDRIRAQIPEFRALIPASIDLQVAQDRSPTIRASLDEVESSLAIAV 348

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + M++++++R      L     + + +  T     L     N  ++ A+    G+ V+
Sbjct: 349 GLVIMVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCDFSLNNLSLMALTIATGFVVD 407

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-- 793
           D +VV + +    +     +  +        E     +  S++     +P+ +  G    
Sbjct: 408 DAIVVLENI---SRHVEAGMKPKKAALIGAREVGFTVLSMSLSLIAVFIPLLLMSGLPGR 464

Query: 794 -IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F++ ++  I ++   S+ +   +  ++   R   
Sbjct: 465 LFREFSVTLSVAIGISLVVSLTLTPMMCAYLLKQRPSR 502



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 96/218 (44%), Gaps = 6/218 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +  A +     +++ +T +   +T++ T     ++ ++     IV ++ +   
Sbjct: 809  TISFNLPEGKALSDASAAIERTMTALGVPNTVRGTFAGTAQVFQDTQNSQIVLILAAIAT 868

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    +FG  F+L A+  ++ LIG    + +
Sbjct: 869  VYIVLGVLYESYVHPLTILSTLPSAGVGALLALEMFGAPFSLIALIGIMLLIGIVKKNAI 928

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     +S RD I ++        + T++AA    LP+A     G  +  
Sbjct: 929  MMVDFALDAERNG--GMSARDAIFQASLLRFRPIMMTTLAALFGALPLAFSSGDGAELRQ 986

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               I +A G++++   +++    + L+    R++ +++
Sbjct: 987  PLGITIAGGLIMSQLLTLYTTPVVYLYFDRLRSRFSKV 1024


>gi|299532267|ref|ZP_07045661.1| acriflavin resistance protein [Comamonas testosteroni S44]
 gi|298719929|gb|EFI60892.1| acriflavin resistance protein [Comamonas testosteroni S44]
          Length = 1084

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/537 (10%), Positives = 144/537 (26%), Gaps = 51/537 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N     +L      +G+         +  +D+FP+      +           +    
Sbjct: 8   LKNPVLATMLMLAFVVLGVFS-----YQRLKVDQFPNIEFPVVV---------VTVEYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + +           +  + + + F         AD V   + 
Sbjct: 54  ASPEIVESEVTKKIEEAVNSVAGINALTSRSYEGTSVVIIEFQLHIDGRRAADDVREKVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ--------------VISHAIEQSMEI 166
            V   L  + K+  ++       ++       D                   AI  +   
Sbjct: 114 SVRPTLRDEVKEPRVIRFDPASTAVWSLAVLPDPHALHGKTAANGQSVTPPDAIALTSWA 173

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
            +    ++                 ++    DP  L     T  +++      N      
Sbjct: 174 DQVLKKRLENVRGVGAVNMVGATKREINVYLDPRALEAYAITPEQVAQAVRAENQDLPVG 233

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
               +           ++   E                       I              
Sbjct: 234 AIRSKAQERVVQIDARIQRPEEF--------------------ARIIVAYRNGAPIRVGQ 273

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
              +      +    +                 +    ++        +     P     
Sbjct: 274 LARVQDDAQELQTLALYNGSRTLLMSVQKAQDENTIEVVDGLNAAIKAIAPELPPGVRLQ 333

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
               N  A        + T    A L ++++F+ +   +  ++   ++ + +I T   + 
Sbjct: 334 AIADNSRAIRVGVDNVRQTLIEGALLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMH 393

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
             G ++ + ++  + L +GL +D  I+V E I    +  ++ + +   G       +  +
Sbjct: 394 WFGFSINMVTLMALSLCVGLLIDDAIVVRENIVRHVQMGKNAYQAAMEGTQEIGLAVLAT 453

Query: 467 NITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            ++ +   + + F G   G     F IT+  ++LISMF + ++   +          
Sbjct: 454 TLSIVAVFLPIGFMGGIIGKFFHEFGITIVAAVLISMFVSFTLDPMLSSVWHDPAIH 510



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 60/157 (38%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + +LI       W   +    TL + +  T  F   FG   N+  + A+   +G 
Sbjct: 354 IEGALLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMHWFGFSINMVTLMALSLCVGL 413

Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+  +     +      +   E     + T+++     LP+   GG
Sbjct: 414 LIDDAIVV----RENIVRHVQMGKNAYQAAMEGTQEIGLAVLATTLSIVAVFLPIGFMGG 469

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      F I +   ++++   S  +   +    +D
Sbjct: 470 IIGKFFHEFGITIVAAVLISMFVSFTLDPMLSSVWHD 506



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 68/188 (36%), Gaps = 12/188 (6%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
             V   +K+ +  I              K   E     I  ++++ I + + +  +F  + 
Sbjct: 847  EVTADIKQALATIPMPPGYSYQFSGAAKNMAESFGYAISALMLAIIFIYMILASQFKSFL 906

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD--------R 743
              L  +T+L L +   +    +FG   ++ ++  V+ L+G    + +++ D        R
Sbjct: 907  QPLALMTSLPLTLIGVVLALMMFGSALSMFSIIGVVMLMGLVTKNAILLVDFAIRAREPR 966

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
              +        +   + +  +    L   + T++A    ++P+A     G          
Sbjct: 967  TNEASGQTEPGLPRNEALLLAARVRLRPILMTTLAMIFGMVPLAFAVTEGSEQRAPMGQA 1026

Query: 801  MAFGIVVA 808
            +  G++ +
Sbjct: 1027 VIGGVITS 1034


>gi|67923909|ref|ZP_00517366.1| Hydrophobe/amphiphile efflux-1 HAE1 [Crocosphaera watsonii WH 8501]
 gi|67854261|gb|EAM49563.1| Hydrophobe/amphiphile efflux-1 HAE1 [Crocosphaera watsonii WH 8501]
          Length = 1105

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/595 (12%), Positives = 160/595 (26%), Gaps = 45/595 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G +           LD+ P   PK              + +  +
Sbjct: 11  KRPVLSTVCTIVIILLGTISMAV-----LPLDKLPEIAPKK-------------VAVTAN 52

Query: 62  EDDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +   +  L   +        I  F+       + ++F     +      V 
Sbjct: 53  YIGADAKTTEDNVTTVLEREINGTEQVRWIDSFTDNTGNVTVNVTFPTETDRNTAQVLVQ 112

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-----HAIEQSMEIIRQRI 171
             +    S L     +  + T  +     ++     ++                + R   
Sbjct: 113 NQVSQAASDLPQVVNQAGVRTNKQSPSITLIYAFYSEKGPDGEYLYDKTFLYNYVDRYIW 172

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           +++                  +    +P +L     T   +       N        G +
Sbjct: 173 NEMKGLPGVGSVSLFGGAKYAMRIWLNPDKLAARGLTAIDVINVINEQNFDTGVGRIGQQ 232

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                   +  +  +                    +    +                   
Sbjct: 233 PAPPGQQFEIPLRAQGR-------------FRDVTEAEEMVVKVGEDGTLIRIKDVGRAE 279

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +        +        +       +   T E A    A L     P    ++   N
Sbjct: 280 LGMENYDTLVDVNGNPGVAFLMYQLPGSNALETAEAAKAKMAELEPSFPPGLKVVIGLDN 339

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      LV++V+F+ +   +  ++   +I + ++  +  L+  G T
Sbjct: 340 TLFVNASIEDLTVTLLQAIALVVLVIFVFLQDWRTTVIPGIAIPVALVGAMIGLNAFGFT 399

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS-TIFDSNITA 470
           L   S+   VL  GL VD  I++ E +  +  +      +        +  TI  S +  
Sbjct: 400 LNQLSLFACVLATGLVVDDGIVIVESVSSKLAQGMRPTQAAMDSMDELFGATIATSVVLM 459

Query: 471 LIATVVLFFFGGGA--VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID-INP 527
            +   V FF G      R FA+T+  ++L S F A++    M   ++   + +       
Sbjct: 460 AVFIPVCFFPGTTGIVYRQFALTIIFAVLFSTFNALTFSPTMSAILLGPPEEQHGPLAVF 519

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            + F  + + I   + R   +   I I+     +  L   G  Y     G I   
Sbjct: 520 FNAFNRVFNVIQEGYRRFVNFLTHIRIIVMALFVAGLIATGWMYTTMPSGFIPAE 574



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 63/166 (37%), Gaps = 9/166 (5%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            +L    +  + +  + + +++     W   +     + + +   +     FG   N  +
Sbjct: 348 EDLTVTLLQAIALVVLVIFVFLQ---DWRTTVIPGIAIPVALVGAMIGLNAFGFTLNQLS 404

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A +   G  V+D +V+ + +          +        S++E  G ++ TS+     
Sbjct: 405 LFACVLATGLVVDDGIVIVESV---SSKLAQGMRPTQAAMDSMDELFGATIATSVVLMAV 461

Query: 783 VLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +P+  + G+       FA+ + F ++ +  +++  +  +   +  
Sbjct: 462 FIPVCFFPGTTGIVYRQFALTIIFAVLFSTFNALTFSPTMSAILLG 507



 Score = 45.1 bits (104), Expect = 0.054,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 69/214 (32%), Gaps = 30/214 (14%)

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            L+        S      +E V  +  +        NT       +        V   ++ 
Sbjct: 836  LIISPAPGYSSGQVISTMEQVANETLQPGFGYEWTNTAAEEKSSAG----AAPVVFGLAF 891

Query: 678  IAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEF------------------ 718
            + + + +  +++ Y   L  + T+ L I   LG      + F                  
Sbjct: 892  VMVFLVLAAQYESYIDPLIILLTVPLAILGALG-MIWLRVTFVQTAPFNPGNGIWPVLNN 950

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            N+ A  A++ LIG +  + +++ +      +     ++       +  + L   + T+++
Sbjct: 951  NMYAQVALVMLIGLAAKNAILIVEFAN---QSRDLGMTITKAAINAAEQRLRPILMTAVS 1007

Query: 779  AFISVLPMA---VWGGSVIGSFAIPMAFGIVVAA 809
            + +   P+      G     S    +  G+ +A 
Sbjct: 1008 SLVGFAPLLSASSVGAVSRWSLGTAIFGGLALAT 1041


>gi|297518173|ref|ZP_06936559.1| multidrug efflux system subunit MdtB [Escherichia coli OP50]
          Length = 873

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/652 (10%), Positives = 171/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++  F++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|313159291|gb|EFR58656.1| RND transporter, HAE1 family [Alistipes sp. HGB5]
          Length = 1044

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/618 (11%), Positives = 178/618 (28%), Gaps = 35/618 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + + L  +I  +GL+  L        ++++P   P                  +  +
Sbjct: 8   RPIFAISLAIVIVLVGLISIL-----NLPIEQYPDITPPVV---------EVSATYDGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
            + VN  +     +    +        +     + +  ++F      +  A      +  
Sbjct: 54  AETVNNAVATPVAQSVMGVSDMLYLQTTSANDGSMVMQVTFDIGSDPDLDAIFTQNNVSS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L     K  + T       +++   +           S        +++       
Sbjct: 114 AAAQLPATVTKQGVTTRKTMTGFLLVFSLHS-DGRYDDEFLSNYAYINLQNELLKINGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P  L+      + ++              FG     D     Y
Sbjct: 173 KVSIMGAGEYAMRVWLRPDVLKYYDIPVSAVTAAIENQGGIYPAGQFGAEPAPDGTSYTY 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +I+                +    +        +       ++           
Sbjct: 233 TVTMPPQIT-------------TAEQFGDIVVVTTSEGEQIRLRDVADVSLGSQSYGVSS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         +   +   +     +      A L                  +     S 
Sbjct: 280 LFEGKPTALIVIYQEPGSNAVAVGDKVKAEMARLGERLPDGITTSTVVDTTTSIDAGISD 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+ ++++ +   +  ++   +I ++++   AL  LLG ++ + S+ G+V
Sbjct: 340 IFTTLIIALVLVICIIYLFIQDWRATVIPLVAIPVSLVGAFALFPLLGFSINIISLLGLV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E  +           +         S I  + +  L   + + F G
Sbjct: 400 LAIGLVVDDAIVVVEAAQVNIANGMKPRAAALEAMKNVASPIVATTVVLLAVFIPVSFTG 459

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSRFFLIP 535
              G   + F++T+ +S++IS F A+++  A+   ++R ++                 + 
Sbjct: 460 GITGRLFQQFSVTIAVSVVISAFNALTLSPALCALLLRRREPPKKGFFAAFNRWFARRMD 519

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              A      R        + ++ ++  L    L  G   +      ++     + S ++
Sbjct: 520 KYTAFTPTLIRHVARTGVFIAAVLAVIFLVWRKLPAGFLPEEDQGYVMVMVSTPEASSLQ 579

Query: 596 SNLESLQIGDISFQNFDG 613
              +++   D   +    
Sbjct: 580 VTQKAMIRADEVIRTLPE 597



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 98/263 (37%), Gaps = 7/263 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            F   + +       + L  V       Q   +S          +V  Q    ++VA   
Sbjct: 245 QFGDIVVVTTSEGEQIRLRDVADVSLGSQSYGVSSLFEGKPTALIVIYQEPGSNAVAVGD 304

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYF 692
            ++    ++ E +P     +T +         I      +II+ + ++  I++    W  
Sbjct: 305 KVKAEMARLGERLPDGITTSTVVDTTTSIDAGISDIFTTLIIALVLVICIIYLFIQDWRA 364

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  +  + + +      F L G   N+ ++  ++  IG  V+D +VV +  + N+    
Sbjct: 365 TVIPLVAIPVSLVGAFALFPLLGFSINIISLLGLVLAIGLVVDDAIVVVEAAQVNIA--- 421

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
             +  R    +++       V T++      +P++  GG        F++ +A  +V++A
Sbjct: 422 NGMKPRAAALEAMKNVASPIVATTVVLLAVFIPVSFTGGITGRLFQQFSVTIAVSVVISA 481

Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832
            +++ ++  +   +   R    +
Sbjct: 482 FNALTLSPALCALLLRRREPPKK 504



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 80/230 (34%), Gaps = 21/230 (9%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + L   P    + T V++ + +   +++P            + +      G+V ++    
Sbjct: 816  IGLTVTPAARTSTTTVMQDITRTAAQVLPDDVGTAWSGTSFQEANASKTGGLVYLLALVF 875

Query: 679  AMLIYIWIRFKWYFALGAITTL---ILDITKTLGFFALFGIEF--NLTAVAAVLTLIGYS 733
              L    +   W   L  + ++   +L     +G   L    +  ++    +++ LIG +
Sbjct: 876  VFLALAALYESWGLPLAILMSVPVAVLGAVLFIGVSHLLNALYVNDIYMQISLVMLIGLA 935

Query: 734  VNDKVVVY---DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
              + ++V    DR+           S  D    +    +   + T+ A  + V+P+    
Sbjct: 936  AKNAILVVEYADRLFNE-----QGASLMDAAIGAAKLRVRPIIMTAFAFILGVMPLIFAS 990

Query: 791  GS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIY-----DWRAKNAR 832
            G          + +  G++ A    IF+   +  F+      + R +  +
Sbjct: 991  GVYATARNIMGVALVGGMLFATLLGIFVYPALYYFVGRIGGFERRRERKK 1040


>gi|300113959|ref|YP_003760534.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Nitrosococcus watsonii C-113]
 gi|299539896|gb|ADJ28213.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Nitrosococcus watsonii C-113]
          Length = 1072

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/668 (12%), Positives = 178/668 (26%), Gaps = 43/668 (6%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKK-EGIGV 88
            ++R P   P               +V+           +       L   +   E +  
Sbjct: 33  PIERHPQIAPPT-------------VVVSTTYPGASGETVAKTVATPLEQEINGVEDMLY 79

Query: 89  FSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
            S +   +   ++T++F      +     V   +     +L  + ++  +          
Sbjct: 80  MSSQATNDGALRLTITFKLGTDLDKAQVLVQNRVALAEPRLPEEVRRMGISVRKSSPDLS 139

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++            I  S   +    + +                  +    DP  L   
Sbjct: 140 LVVNIISPDQRYDQIYLSNYALIHVREALARLPGVGDIALFGGRDYSMRVWLDPESLASR 199

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T   +       N        G   +  S   Q  V     ++             + 
Sbjct: 200 ELTAMDVVRAIREQNVQVAAGTLGEPPIPGSTDLQLTVNTMGRLT-------------EA 246

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    I       +  +      I    A       L +      I   +   +   T 
Sbjct: 247 KQFGEIIVKTGTEGQVTYVRDIARIELGAADYTSNLYLGSQPTVGIIIFQRPGSNALETK 306

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        L     P     V          S             +VL+V+ + +   +
Sbjct: 307 QAVMETMERLAKDFPPGIAYRVVYDTTTFIEESVKSVVKVLFEAVLIVLVVVLVFLQNWR 366

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ +++I T A+L+ LG +L   ++A +VL IG+ VD  I+V E +       
Sbjct: 367 ATLIPMLAVPVSLIGTFAVLAALGFSLNTLTLAAMVLAIGIVVDDAIVVVENVERNLEAG 426

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFT 502
                +           I    +      +   F     G   + FA+T+  + +IS   
Sbjct: 427 LPRREATLKAMGEVSGAIIAMALVLSAVFIPTAFISGITGQFYQQFALTIAAATIISALN 486

Query: 503 AISIVRAMMIFI---------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
           ++++  A+             I  + +  +       F         Q+       V +S
Sbjct: 487 SLTLSPALSAIFLKSPDEKKDILQRWLDRLFGWFFKGFNGTFSWFRTQYTLLIRRFVWMS 546

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +L       LL    L +     G I         V   +  +         +   N   
Sbjct: 547 VLMLGIYGGLLGLTYLGFTQVPTGFIPQEDQGYLIVFAQLPDAASLERTDAVLRRANEII 606

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                +             R  +     I  I+   + +  E +G     E +++ + G+
Sbjct: 607 LDTQGILSTNAVAGWSVIMRGNQPNVGTIFVILDPFSERTEENLGANAIAETLQQRLGGI 666

Query: 674 IISAIAML 681
             + I + 
Sbjct: 667 QEAFIGVF 674



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/211 (10%), Positives = 65/211 (30%), Gaps = 6/211 (2%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                   +     + + I E                         +    +  + + + +
Sbjct: 837  DAMPGISSGQAIALMEAIAERELPRGFGFEWTELTYQQILAGNTAVYIFPLCVLFVFLVL 896

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +++ W   L  I  + + +   +    L G++ N+      + LIG +  + +++ + 
Sbjct: 897  AAQYESWSLPLAVILIVPMCLLSAIIGVWLMGMDNNIFTQIGFIVLIGLASKNAILIVEF 956

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
             +        ++S  +   +S    L   + TS A    VLP+ +    G        + 
Sbjct: 957  AK--QLQDKQALSRYEAAIESSRLRLRPILMTSFAFVFGVLPLVIAEGAGAESRELLGVA 1014

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  G++      +       + +  +  +  
Sbjct: 1015 VLSGMLGVTFFGLVFTPIFYVVVRKFVEQRQ 1045



 Score = 41.2 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAV--AAVLTLIGYSVNDKVVVYDRMRKN 747
           W   L  +  + + +  T    A  G  F+L  +  AA++  IG  V+D +VV + + +N
Sbjct: 365 WRATLIPMLAVPVSLIGTFAVLAALG--FSLNTLTLAAMVLAIGIVVDDAIVVVENVERN 422

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWG--GSVIGSFAIPMAFG 804
           ++     +  R+   K++ E  G  +  ++      +P   + G  G     FA+ +A  
Sbjct: 423 LEA---GLPRREATLKAMGEVSGAIIAMALVLSAVFIPTAFISGITGQFYQQFALTIAAA 479

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++A +S+ ++  +         +  
Sbjct: 480 TIISALNSLTLSPALSAIFLKSPDEKK 506


>gi|167718920|ref|ZP_02402156.1| multidrug resistance protein MdtC [Burkholderia pseudomallei DM98]
          Length = 802

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 159/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL   +   +       FP+ +                  L    
Sbjct: 10  RPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTIL--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVAEMTSMSSVGNARIVLQFNLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMV-VSLTSKTASPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSLSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +G H      N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEAGPHRYQLYTNDQATKAAQYKDLVIAYRNHAAVSLSDVSSVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        I       +   TIE        L A                    S +  
Sbjct: 275 MNGERAVLVILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG +L   S+  +++
Sbjct: 335 EHTLVIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++        +           + + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLVVSLTLTPMMCARLLPEAHAPRDEGRVARWLERGFEWMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +       +  +  +  +   Y +  KG     
Sbjct: 515 RGYERTLSWALRHPFTILMTLVATIALNIALYIVVPKGFFPQQ 557



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +S + M++++++R  W   L     + + I  T G   L G   N  ++ A++   
Sbjct: 338 LVIAVSLVVMVVFLFLR-NWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +                 E     +  S++     LP+ + G
Sbjct: 397 GFVVDDAIVVLENI---ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G V      FA+ ++  I V+   S+ +  
Sbjct: 454 GIVGRLFREFALTLSLAIAVSLVVSLTLTP 483


>gi|291618069|ref|YP_003520811.1| MdtB [Pantoea ananatis LMG 20103]
 gi|291153099|gb|ADD77683.1| MdtB [Pantoea ananatis LMG 20103]
          Length = 1040

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/679 (10%), Positives = 184/679 (27%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGIL-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASIVTLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 SNLLPNDLPNPPVYSKVNPADPPIMT-LAVTTTSMPLTQVQDMVETRVAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   L  +  T+  +       N +                    
Sbjct: 184 VTLTGGQRPAVRVKMNTQALAAMGLTSEAVRTAITNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +    +                 I +       G  
Sbjct: 236 ------------VTLSANDQMKSVEDYRQLIVSYKNGAPVRLADVATIDQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    +   L A         +          S +  
Sbjct: 284 SNREPAIVLNVQRQPGANIIATADNIRAMLPSLIASLPKSVDVKLVTDRTTNIRASVTDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++++++ +      ++   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QHELMLAMGLVVMIIYLFLRNVPATIIPAVAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPMTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   +       ++ +    +      +I 
Sbjct: 464 VIGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSAESLRRQNRFSRASEAMFDRIIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL---GVLANRPVDLS 592
                         + +S+      + +L    +  G   +    +    + A + V  +
Sbjct: 524 VYGRGLSQVLNHPWLTLSVALGTLLLTVLLWIAIPKGFFPQQDNGIIQGTLQAPQSVSYA 583

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +      +    +         +F+      P  + A+ ++        +E +P    +
Sbjct: 584 SMAERTRDVASVIMKDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDARSERIPEIQQR 643

Query: 653 NTEIVGPKISRELIRKGIV 671
             + V       L  + + 
Sbjct: 644 LQQQVSKIPGVTLWLQAVQ 662



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +  + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 347 LMLAMGLVVMIIYLFLR-NVPATIIPAVAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPMTAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DVIGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|167628609|ref|YP_001679108.1| acriflavin resistance protein, putative [Heliobacterium
           modesticaldum Ice1]
 gi|167591349|gb|ABZ83097.1| acriflavin resistance protein, putative [Heliobacterium
           modesticaldum Ice1]
          Length = 1050

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/603 (10%), Positives = 164/603 (27%), Gaps = 46/603 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    + ++      IGL            ++ +P+                       
Sbjct: 8   LKRPAMMTMVALFFVVIGLYS-----YRSIGVELYPALNTPFVT---------VSAAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    +E  S L           + +  I + F  +      A  V   + 
Sbjct: 54  AGAEEIETQVVKPLEEGLSSLAGLKKLTSVSVEGRATILIEFELTADANQAAIDVQKKVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +L  D K  +++      + +     +  + +  A E + ++I++R   +      
Sbjct: 114 SIKGRLPEDVKDPVVIKRDMNALPVAAIAFSSSRPLYEANEMAKDLIKER---LQKIPGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++    D ++L +   +  ++       N ++                 
Sbjct: 171 AEVTISGGQEREIQINIDRTKLERYGLSINQVIRRLDSENLNEPSGRLDRPEAEYMVRVL 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  EI  + +                         +        ++      + + 
Sbjct: 231 GQFRSVEEIRNLEI--------------------PMANGKSIALREIADVSDTYKELREY 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L        +   ++  S     +        L+         I+          S +
Sbjct: 271 TRLNGQPALALMVFKQSDASLVDVGDRVKKEIDSLKKELPGDTQLIIARDFSQYIRLSVN 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +           + L   +   +  +    +I +++I TLA +   G T  + S+ G+
Sbjct: 331 GTRANILEGILTTSVALLFFLRDWRSMVSVLIAIPVSLISTLAGMYFAGFTFNVMSLMGM 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSL---DMGFSRAYSTIFDSNITALIATVVL 477
            + IG+ VD +I+V E I       +S   +          A   I  S++        +
Sbjct: 391 AMCIGILVDDSIVVLENIHRHLAMGKSPKQAALDGRSEIGMAAIAITLSDVVVFAPIAFM 450

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK------KMKSIDINPLSRF 531
               G   R F +T+  + L+S+F + ++   +   +++ +         +      +  
Sbjct: 451 SGMVGQFFRQFGLTVVFATLMSLFVSFTLTPLLASRLMKPRGGGAKLHPLAGVSWYQAAC 510

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
              P        R R+  +          +                   +G       D 
Sbjct: 511 IFAPVDRYAARFRDRYLRILEWSFRHRKQVIAAGVLFFFASAALVPLKLIGFEFAPRTDQ 570

Query: 592 SVV 594
             +
Sbjct: 571 GDI 573



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 56/154 (36%), Gaps = 10/154 (6%)

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           +  ++    W   +  +  + + +  TL      G  FN+ ++  +   IG  V+D +VV
Sbjct: 345 VALLFFLRDWRSMVSVLIAIPVSLISTLAGMYFAGFTFNVMSLMGMAMCIGILVDDSIVV 404

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSF 797
            + +    +      S +       +E    ++  +++  +   P+A   G        F
Sbjct: 405 LENIH---RHLAMGKSPKQAALDGRSEIGMAAIAITLSDVVVFAPIAFMSGMVGQFFRQF 461

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +     +V A   S+F++  +   +     K  
Sbjct: 462 GLT----VVFATLMSLFVSFTLTPLLASRLMKPR 491



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/492 (10%), Positives = 129/492 (26%), Gaps = 39/492 (7%)

Query: 54   SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-----------KITLSF 102
             ++ L +              +     + +      S+                +I +S 
Sbjct: 575  VNVELPIGTPIQKTDQALKTIESYLQTIPEIRYFQTSLGSTGGIGMGSAGSNIGRIGVSL 634

Query: 103  ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
             + R ++     V+  ++                 +        +            +  
Sbjct: 635  VNKRERKRSVWDVSEQIRQWAVNFPDGRITVTESDSMASGSGYPVQIEVSGSDPKTLLTA 694

Query: 163  SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
              +I        G  +             ++    D  +   +  +   +S       N 
Sbjct: 695  VDDIKAIVAATAGSRD---TDSNWRVGQPEIQISIDRLKAAYMGVSVKDISETLRASLNG 751

Query: 223  KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
                 + V         +    +K ++  +     T N         V      +G    
Sbjct: 752  NVSTKYRVGDKEYDVTVRINRLNKSDLDALRTLTLTNNAGLPVQLQQVARIGIGVGPTEI 811

Query: 283  FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
                R                          +  A + G    +    + + ++A  LP 
Sbjct: 812  RRADRQRT----------------------ITISAGLQGRVLDDFLKEVDSKIKAKGLPQ 849

Query: 343  KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
             ++     +  +   S        A+   LV +VL M+        +   S+ L +   L
Sbjct: 850  GVSYRFTGSAQSMQDSFRELVAALALSIVLVYMVLVMLYESYMTPFIRMLSLPLGIAGAL 909

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
              L++   +L + S+ GI++  GL   +  L+ +       + +S+  +L          
Sbjct: 910  IALAVTKNSLNIFSLIGIIMMDGLVAKNGTLLIDYTHTLRERGRSLKEALIEAGQTRLRP 969

Query: 463  IFDSNITALIATVV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            I  + +T +   +        G       A+ +   +L S    + I+  +   +  +K+
Sbjct: 970  IIMTTVTMVFGMLPSALALTEGSETRSSMAVVLIGGLLSSTLFTLIIIPVVYTLMEDWKE 1029

Query: 520  MKSIDINPLSRF 531
                    +   
Sbjct: 1030 GLRRRWGKVKER 1041


>gi|157960983|ref|YP_001501017.1| acriflavin resistance protein [Shewanella pealeana ATCC 700345]
 gi|157845983|gb|ABV86482.1| acriflavin resistance protein [Shewanella pealeana ATCC 700345]
          Length = 1036

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/572 (10%), Positives = 161/572 (28%), Gaps = 39/572 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVVAIVLSLLLCVFGAVS-----FTKLAVREMPDVESPVVT---------VMTTYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +          R   ++IT++F            V   +  
Sbjct: 55  SATIMESQITTALESELTGISGVDQIESVTRNGMSRITVTFLLGWDLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + K  ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPDEAKDPIVSKDNGSGEPAVYVNLSSS--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  + +P  +     T + +                          N  
Sbjct: 173 SVDISGGLYKVMYVQLNPELMAGRNITASDIVSVLNRE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      +   TA            +        + +     N+           
Sbjct: 214 TPGGEVRNDTTVMAVRTARLYQTPDDFNYLVLRTAADGSQVYLKDVANVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         IV+  +      S   
Sbjct: 274 KSDGVVNISLGIVPQSDANPLEVAQDVHKEVDQIQKFLPEGTKLIVDYDSTVFIDRSIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A+ A LV++VL++ +   +  L+   ++ +++I      ++ G ++ L ++  ++
Sbjct: 334 VFSTLAVTALLVILVLYIFIGQARATLIPAVTVPVSLISAFIAANVFGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGEPPILAAYNGTREVGFAVMATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G        F++ + +S+L S   A+++   +    +    K    ++   S F  + + 
Sbjct: 454 GMVGLLFTEFSVMLAVSVLFSSLIALTLTPVLGSKILKANVKPNRFNVWVESIFTRLENF 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL 569
                 +A    +   ++   C +   +    
Sbjct: 514 YRKMVTKAVTLRLAAPLVIIACILGSGWLMQQ 545



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +  + +F++       L  +     + +   + +     +I + +
Sbjct: 252 SQVYLKDVANVFIGAENENSTFKSDGVVNISLGIVPQSDANPLEVAQDVHKEVDQIQKFL 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIYIWIRFKWYFALGAITTLILDIT 705
           P  T    +          I +    + + + + +L+      +    L    T+ + + 
Sbjct: 312 PEGTKLIVDYDSTVFIDRSIDEVFSTLAVTALLVILVLYIFIGQARATLIPAVTVPVSLI 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  +FG   NL  + A++  IG  V+D +VV + +                     
Sbjct: 372 SAFIAANVFGYSINLLTLMALILSIGLVVDDAIVVVENI---FHHIEKGEPPILAAYNGT 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     + T+    +  LP++   G V      F++ +A  ++ ++  ++ +   +   
Sbjct: 429 REVGFAVMATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALTLTPVLGSK 488

Query: 823 IYDWRAKNAR 832
           I     K  R
Sbjct: 489 ILKANVKPNR 498



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        L G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLYLTGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    +     I  +    L   + T+    I  +P+ +    G     S    + FG+
Sbjct: 931  QLRDRGLEIEQAIIDASVRRLRPILMTAFTTLIGAIPLILSTGAGAESRISVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFI 823
              A   ++ +   +   I
Sbjct: 991  AFATFVTLLVIPAMYRLI 1008


>gi|260655685|ref|ZP_05861158.1| efflux transporter, AcrB/AcrD/AcrF family, inner membrane component
           [Jonquetella anthropi E3_33 E1]
 gi|260629602|gb|EEX47796.1| efflux transporter, AcrB/AcrD/AcrF family, inner membrane component
           [Jonquetella anthropi E3_33 E1]
          Length = 1037

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/621 (10%), Positives = 173/621 (27%), Gaps = 42/621 (6%)

Query: 1   MR-NNPWLV---ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           MR    + +   +   +   + +   L   L Q  ++  P+      +            
Sbjct: 1   MRGLPRFALTHPVTVIITTIVAIFFGLY-GLRQMGMENMPNVDIPIVL---------VST 50

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
            ++      V+  +    +   + ++       +  + +    + F  S+   + A  V 
Sbjct: 51  TIQGASPTVVDNDVADPLESRINTVEGVKSLTSNSYEGRCFTIVEFELSKDIADAAADVR 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L       ++      +  ++         +S  +  S        +QI  
Sbjct: 111 GKVSTAQRQLPDAADTPIVDKFNIADTPVMYVAVTASSGVSRTL-LSDYADSVAKEQIQT 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           +              Q+    D   L     T + +       +                
Sbjct: 170 ALGVGGVDMQGLQKRQIRVWLDAEALAARNLTVSDVRNAVAASH---------------- 213

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +      +G          + +T   +  +    +            +      
Sbjct: 214 ----IELPGGKIQTGTQDYSIRLKGEYETVDSLASLPVKTVDGTVIRLHDVARVEDGFED 269

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                V+        +   +   +     +        L A +       V + N     
Sbjct: 270 RNSYAVVDGAPSILLVIRKQRGANEVALSDAVRERIKSLNATAPAGIELKVVQDNARFIR 329

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S             L  +++F+ +   K  LV   ++ + +++ +  L  +G T+   +
Sbjct: 330 LSMQGVLSNIISGILLTAVIMFLFLRTLKSTLVTIVTMPVCLLIGMLFLWGMGFTINNMT 389

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             G+ L IG+ VD+  +V E I     + ++ F +   G +   S +     T +   + 
Sbjct: 390 TMGLSLVIGMVVDATTVVLENIHHHFDQGKTAFRASLDGTTEVSSAVVAGAATTVAVFLP 449

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLS 529
           +       G   R F  T+ ++IL+S+  ++++   +   ++  K+     + +      
Sbjct: 450 VALMPGVVGRFFRSFGFTITVTILVSLLLSLTLTPFLCSRLLARKRETMLERILKAPETW 509

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +        F  +  S  F++                 +G I +    N   
Sbjct: 510 LQRGYTRLLRWALCHRFFTLLFASATFAVGLFFASRLGSEFVPSSDEGEINVNFELNASA 569

Query: 590 DLSVVRSNLESLQIGDISFQN 610
            L   ++ + +L     S   
Sbjct: 570 SLEASQAFITNLINSMKSNPY 590



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              G++ + + +   + I+F+ +   L  +  + L  +   G      ++ ++ ++  ++ 
Sbjct: 847  FSGLLFALLLVYTVMAIQFESFIHPLIIMFAVPLMTSGAFGLLLAAHLKLSVMSLMGIIM 906

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-- 786
            L+G  VN+ +++ D      +L  + +S  + +  +    L   + TS++     +P+  
Sbjct: 907  LVGIVVNNAIILVD---YANQLRASGLSRFEAMLAAGPRRLRPILMTSISTIAGAVPVAL 963

Query: 787  -AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              V GG +    +I    G+V +   ++ +   + L + ++  K  
Sbjct: 964  NMVEGGEIRQPMSIATIGGMVTSTLLTLLVIPVVYLVVDEFTDKLK 1009



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 69/215 (32%), Gaps = 8/215 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + +E       S+   DG  + L+ ++ Q G +          + K       + I+   
Sbjct: 261 ARVEDGFEDRNSYAVVDGAPSILLVIRKQRGANEVALSDAVRERIKSLNATAPAGIELKV 320

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF--KWYFALGAITTLILDITKTLGFFAL 713
           +        L  +G++  IIS I +   I   F       L  I T+ + +   + F   
Sbjct: 321 VQDNARFIRLSMQGVLSNIISGILLTAVIMFLFLRTLKSTLVTIVTMPVCLLIGMLFLWG 380

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   N      +  +IG  V+   VV + +      +    +          E     V
Sbjct: 381 MGFTINNMTTMGLSLVIGMVVDATTVVLENIH---HHFDQGKTAFRASLDGTTEVSSAVV 437

Query: 774 YTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
             +       LP+A+  G V     SF   +   I
Sbjct: 438 AGAATTVAVFLPVALMPGVVGRFFRSFGFTITVTI 472


>gi|242240122|ref|YP_002988303.1| multidrug efflux system subunit MdtC [Dickeya dadantii Ech703]
 gi|242132179|gb|ACS86481.1| acriflavin resistance protein [Dickeya dadantii Ech703]
          Length = 1030

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/642 (11%), Positives = 162/642 (25%), Gaps = 38/642 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I   G+L           +   P                     L   
Sbjct: 9   QRPVATTLLALAITLCGVL-----GYRLLPVSPLPQVDFPVI---------AVTATLSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +               +I L FA  R     A  V   +  
Sbjct: 55  SPETMASSVATPLERSLGRIAGINEMTSMSSLGSTRIILQFALDRDINGAARDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +              + ++    +        +       Q   ++   E   
Sbjct: 115 AQSLLPSNMASRPYYRKVNPSDAPIVI-LTLTSDTYGPGQLYDYASTQIAQRVSQIEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   L  +    +P  L     +  ++       N  +                  
Sbjct: 174 DVTIGGSSLPAVRVSLNPQALFNQGVSLDEVRQSIAQANVRQPVGSLD------------ 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G        N + KT      +                 +   +  VL+  
Sbjct: 222 --------NGDIHYQIQTNDELKTADAYRSLIVHYNNGAPVRLSDVAGVRDSVQNVLNAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +  A      +       +   T++        LR          V +        S   
Sbjct: 274 MTNAKPAVLILIRRAPDANIISTVDNIRASLPELRTLLPASINMEVAQDRSPTIRASLRD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + +  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + 
Sbjct: 334 VERSLTIAVSLVILVVFLFLRSGRATLIPAIAVPVSLIGTFAAMYLCGFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           +  G  VD  I+V E I            +   G      T+   +++ +   + L    
Sbjct: 394 VATGFVVDDAIVVLENISRHIEAGMKPLQASLQGVREVGFTVVSMSLSLIAVFIPLLLMS 453

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F++T+ ++ILIS+  +I++   M   ++R   ++S          L+    
Sbjct: 454 GLPGRLFREFSVTLSVAILISLLVSITLTPMMCSRLLRAHPVRSQPRKRGFNRVLLSVQQ 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                          +L  +     L               Q        +      S  
Sbjct: 514 GYGRSLRWVLNHSRWVLMVLLGTIALSVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQ 573

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                     +    +        +  G       +   +K 
Sbjct: 574 AMKGKLQDFMKIVRDDPAVDNVTGFTGGMRTNSGSMFISLKP 615



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 68/204 (33%), Gaps = 6/204 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            L+R             +   + +  T +     ++  +   P I   L        I  
Sbjct: 283 ILIRRAPDANIISTVDNIRASLPELRTLLPASINMEVAQDRSPTIRASLRDVERSLTIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           ++ +L+           L     + + +  T     L G   N  ++ A+    G+ V+D
Sbjct: 343 SLVILVVFLFLRSGRATLIPAIAVPVSLIGTFAAMYLCGFSLNNLSLMALTVATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +VV + +    +     +       + + E     V  S++     +P+ +  G     
Sbjct: 403 AIVVLENI---SRHIEAGMKPLQASLQGVREVGFTVVSMSLSLIAVFIPLLLMSGLPGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
              F++ ++  I+++   SI +  
Sbjct: 460 FREFSVTLSVAILISLLVSITLTP 483



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 90/214 (42%), Gaps = 6/214 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +   + +++ +T +   S+I+          ++     ++ +I + I 
Sbjct: 803  TIAFNLPDGASLSDATDAIQRTMTALGVPSSIRGQFAGTALAFQQSQHSQVILIIAAIIT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LFG  F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYENYVHPLTILSTLPSAGVGALMALELFGKPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D     +      +S ++ I ++        + T+MAA    LP+ +    G  +  
Sbjct: 923  MMVD--FAQVAQREGKLSAQEAIFRACMLRFRPIMMTTMAALFGALPLVLGSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               I +  G+V++   +++    + LF    R +
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRRR 1014


>gi|300310852|ref|YP_003774944.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300073637|gb|ADJ63036.1| cation/multidrug efflux pump transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1048

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 60/550 (10%), Positives = 151/550 (27%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I  +G++           L   P                    +     
Sbjct: 10  RPVATSLLMLAILLVGIVA-----YRLLPLSALPEVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F      +    +V   +   
Sbjct: 56  PDVMTSSVTAPLERQFGQMPGLKQMSSTSSGGASVITLQFNLDLSLDIAEQEVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     + +      + +++   +        +    I  +   +I        
Sbjct: 116 SNLLPSDLPMPPVYSKVNPADTPIIT-LAVTSNTMPLPKVQDLIDTRIAQKISQLSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  +  L      +       N ++    F       +      
Sbjct: 175 VSLSGGQRPAVRMQLNPRAVAALGLNLDDVRTAIGNANVNQAKGSFDGPTRASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                           ++                ++      V  G  
Sbjct: 235 LRSA--------------------DEYRNLIIAYKNGAPIRVSDVADVVDGAENVRLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +++   +   L+A         +          S    
Sbjct: 275 ANTQPAVIVNIQRQPGANVIAVVDSIKKILPQLQASLPGAIDVHILTDRTTTIRASVDDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K    +   LV++V+F+ +      ++   ++ L+++ T A++ L G ++   ++  + +
Sbjct: 335 KFELLLSVALVVMVIFVFLRNVPATIIPSVAVPLSLVGTFAIMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +      +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENISRYIEEGMKPMQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FA+T+ +SILIS   ++++   M   ++R++  +                IA
Sbjct: 455 VVGRLFHEFAVTLAVSILISAVVSLTLTPMMCARLLRHQPEEQQGWFYHKSQQFFDRIIA 514

Query: 540 IQFMRARFWG 549
              +  ++  
Sbjct: 515 RYGVMLQWVL 524



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 85/243 (34%), Gaps = 12/243 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           ++A +      V    + +   +             V +  Q         V++ +KK +
Sbjct: 245 IIAYKNGAPIRVSDVADVVDGAENVRLGAWANTQPAVIVNIQRQPGANVIAVVDSIKKIL 304

Query: 643 TEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
            ++           +    +  +       K  + + ++ + M+I++++R      +   
Sbjct: 305 PQLQASLPGAIDVHILTDRTTTIRASVDDVKFELLLSVALVVMVIFVFLR-NVPATIIPS 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + L +  T     L G   N   + A+    G+ V+D +V+ + +    +     +  
Sbjct: 364 VAVPLSLVGTFAIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENI---SRYIEEGMKP 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                K   +     +  + +    ++P+   G   G +   FA+ +A  I+++A  S+ 
Sbjct: 421 MQAALKGAEQIGFTIISLTFSLIAVLIPLLFMGDVVGRLFHEFAVTLAVSILISAVVSLT 480

Query: 815 IAA 817
           +  
Sbjct: 481 LTP 483



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 78/215 (36%), Gaps = 8/215 (3%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      +    ++ +K    EI   ++            +  +   +  ++ + + 
Sbjct: 809  TVSFNLAKGASLGEAVKAIKAAEEEIGMPASTVTNFQGAALAFQASLSNTLWLILAAIVT 868

Query: 680  MLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            M I + + ++ Y     I + +    +   L    + G +  +  +  ++ LIG    + 
Sbjct: 869  MYIVLGVLYESYIHPITILSTLPSAGVGALLSLM-ISGTDLGIIGIIGIILLIGIVKKNA 927

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +         S R+ I ++        + T+MAA +  LP+ +    G  + 
Sbjct: 928  IMMIDFALE--AERHEGKSPREAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELR 985

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                I M  G++V+   ++F    I L       +
Sbjct: 986  QPLGITMVGGLLVSQVLTLFTTPVIYLGFDSLGRR 1020


>gi|299069605|emb|CBJ40877.1| multidrug efflux system, subunit C [Ralstonia solanacearum CMR15]
          Length = 1033

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/608 (11%), Positives = 167/608 (27%), Gaps = 45/608 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+            +   P                  +  L    
Sbjct: 10  RPVATALLTIGVALAGMAA-----FNLLPVSPLPQVDFPTI---------SVNASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               ++TL F  SR  +  A  V   +   
Sbjct: 56  PETMAATVATPLERSLGRIAGITEMTSQSALGSTRVTLQFDLSRDIDGAARDVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L      N          + ++    +        E           ++       Q
Sbjct: 116 RSLLPSGLPSNPTYRKVNPADAPIMI-LGLTSDTKSRGELYDAASTILAQKLSQITGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P+ L +   +T  +       N +K   M               
Sbjct: 175 VNIGGASLPAVRVELNPTALNKYGISTETVRTVITATNANKPKGMLEA------------ 222

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G  +    AN   +  +    +                 +   +  + +   
Sbjct: 223 --------GNRVWTLYANDQARHAEEYKPLIIAYRNGAPVRLSDVAEVTDSVQDIRNYGS 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I + +   +   T++    +   LR          V          S    
Sbjct: 275 ANGKPSVLLIINRQPGANIIDTVDRINAILPYLRNTIPAQINLDVMMDRTPTIRASLRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV++V+++ +   +  L+   ++ +++I T  ++ L G +L   S+  + +
Sbjct: 335 ERTLMLSIGLVIMVVYLFLRNLRATLIPSVAVPVSLIGTFGVMYLCGYSLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +            +   G      T+   + + +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENVSRHIENGMRPMQAALKGAREVGFTVVSMSFSLIAVFIPLLMMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G   R FA+T+ ++IL+S+  +++    M   +                    +    
Sbjct: 455 IVGRLFREFAVTLSVAILVSLVVSLTATPMMCARLLKPASEEEPSWFHRKTEGFFNLLLD 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG-VLANRPVDLS 592
                    +R  +  + I +     ++ L       +      G  +G + A++ +   
Sbjct: 515 GYRHSLAWALRHSWLTLLILLATVCLNVYLYIVVPKGFFPQQDVGRLIGFIQADQSISFQ 574

Query: 593 VVRSNLES 600
            +R+ L  
Sbjct: 575 AMRTKLVD 582



 Score = 81.7 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/245 (16%), Positives = 89/245 (36%), Gaps = 10/245 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV LS V    +S+Q               L+  +    + +     +  +  
Sbjct: 246 IAYRNGAPVRLSDVAEVTDSVQDIRNYGSANGKPSVLLIINRQPGANIIDTVDRINAILP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK--GIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            +   +P     +  +      R  +R     + + I  + M++Y+++R      L    
Sbjct: 306 YLRNTIPAQINLDVMMDRTPTIRASLRDVERTLMLSIGLVIMVVYLFLR-NLRATLIPSV 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T G   L G   +  ++ A+    G+ V+D +VV + +    +     +   
Sbjct: 365 AVPVSLIGTFGVMYLCGYSLDNLSLMALTVATGFVVDDAIVVLENV---SRHIENGMRPM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
               K   E     V  S +     +P+ + GG V      FA+ ++  I+V+   S+  
Sbjct: 422 QAALKGAREVGFTVVSMSFSLIAVFIPLLMMGGIVGRLFREFAVTLSVAILVSLVVSL-T 480

Query: 816 AAPIL 820
           A P++
Sbjct: 481 ATPMM 485



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 88/233 (37%), Gaps = 6/233 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S        +         +     L +      + +   + ++  +  I    T+  + 
Sbjct: 780  STFSHYGPTNTPLAVNHQGQFAASTLSFNLAPGASLSVATQQIQDAMNRIGVPITVHGSF 839

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++ +    V V+ + I + I + + ++ +   +  ++TL       L    + 
Sbjct: 840  QGTARAFQDSLSSQPVLVLFALITIYIVLGVLYESYVHPITILSTLPSAGVGALLALIVT 899

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +F++ A+  V+ LIG    + +++ D   +     +  +S  D I  +        + 
Sbjct: 900  DTDFSVIALIGVILLIGIVKKNAIMMIDFALE--AERSQGMSPADAIFHACVLRFRPILM 957

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            T+MAA +  LP+A+    G  +     I +  G++V+   +++    + L + 
Sbjct: 958  TTMAALLGALPLALGHGDGAELRQPLGISIVGGLLVSQILTLYTTPVVYLALD 1010


>gi|227823029|ref|YP_002827001.1| cation/multidrug efflux pump, RND superfamily [Sinorhizobium fredii
           NGR234]
 gi|227342030|gb|ACP26248.1| cation/multidrug efflux pump, RND superfamily [Sinorhizobium fredii
           NGR234]
          Length = 1105

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/671 (12%), Positives = 197/671 (29%), Gaps = 44/671 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  +G             + RFP+                  +     
Sbjct: 9   RNPVAPILAFFVLVVLG-----WQSFNSLPITRFPNIDVPIV---------SIVVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    +   + F      +     V   +  
Sbjct: 55  APAELETQVTKEIEDAVAGISGVDHIESTITDGTSTTAVIFRMEVPTQQAVQDVKDAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L     + ++     +  +I     +   +     E S  +       I       
Sbjct: 115 IRGDLPTSIDEPIVSKVDVEGQAIQTFSISSPGMTLE--ELSWFVDDTVKRAIQGQSGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E D  RL     T A ++      N                     
Sbjct: 173 RVDRYGGSDREVRIELDEDRLNSFGITAADVNGQLRRMNMD------------------- 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   + ++ G      T             +     G                      R
Sbjct: 214 LGSGRGQVGGSEQAIRTLGDARDVSHLANTMISLPNGRFVRLSELGKVTDTYEEPKSFSR 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P +       +A+ +   ++               P     + + +V    G+   
Sbjct: 274 FNGHPGV--TFAVFRAKGASEVSVAETVAKTLDEIRAKHPEVTIEMVDDSVYYTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++V+ + +   +  L++  ++ L+ I T  ++ LLG +L L S   + 
Sbjct: 332 AIHTLIEGALLAVVVVMLFLRNWRATLISAVALPLSAIPTFWVMELLGFSLNLVSFLAMT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +  +  T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIERHIRMGKSPYKAAIEAADEIGLAVIATTFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F +T+ +S+  S+  A  I   M  ++++   +            +     
Sbjct: 452 GIPGQYFIQFGLTVAVSVFFSLLVARLITPVMAAYLMKPTDVGGGHHGDDDSAIMQFYTR 511

Query: 539 AIQFMRARFW----GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            ++F   R++     +  +I+ S+ S+  L        +  +   ++ +    P D  + 
Sbjct: 512 LVRFTTKRWYTRYSTLLAAIVLSVGSVIALMVFVPGSFLPPEDNSRVSLSIELPPDAMLE 571

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            ++  + +I +        E  F++      GD   +   + ++ +K+   +    + + 
Sbjct: 572 DTDRTTTEIYNRIKDIDGVENVFVLGGASPKGDLELRRAAVTVLLEKLDHSLVNKVVNDV 631

Query: 655 EIVGPKISREL 665
               P I   L
Sbjct: 632 IGRTPLIGEYL 642



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 81/258 (31%), Gaps = 8/258 (3%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            +       + +   R V LS +    ++ +      +            + +    V+ 
Sbjct: 236 DVSHLANTMISLPNGRFVRLSELGKVTDTYEEPKSFSRFNGHPGVTFAVFRAKGASEVSV 295

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKW 690
              +     +I    P  TI+  +      +       I  +I  + +A+++ +     W
Sbjct: 296 AETVAKTLDEIRAKHPEVTIEMVD-DSVYYTYGNYEAAIHTLIEGALLAVVVVMLFLRNW 354

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L +   L L    T     L G   NL +  A+    G  V+D +V  + +    + 
Sbjct: 355 RATLISAVALPLSAIPTFWVMELLGFSLNLVSFLAMTLATGILVDDAIVEIENI---ERH 411

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
                S      ++ +E     + T+       +P++   G        F + +A  +  
Sbjct: 412 IRMGKSPYKAAIEAADEIGLAVIATTFTIIAVFVPVSFMPGIPGQYFIQFGLTVAVSVFF 471

Query: 808 AASSSIFIAAPILLFIYD 825
           +   +  I   +  ++  
Sbjct: 472 SLLVARLITPVMAAYLMK 489



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 7/156 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            E    ++  E+ +     +++  + +L+ + + FK        + +L L I        L
Sbjct: 864  ESGDAEVQAEMQQSFGNAMLLGLMMVLVVLILLFKDVIQPFTILFSLPLAIGGVAAALIL 923

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++  +  +L L+G    + +++ D   + M      +     + ++  +     V
Sbjct: 924  TQNALSMPVLIGILMLMGIVTKNAILLVDFGIEMMH---HGMDRTLAMVEAGRKRARPIV 980

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
             TS+A    +LP A+    GGS     AI +  GI+
Sbjct: 981  MTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGII 1016


>gi|50122107|ref|YP_051274.1| multidrug efflux system subunit MdtB [Pectobacterium atrosepticum
           SCRI1043]
 gi|60389971|sp|Q6D2B1|MDTB_ERWCT RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|49612633|emb|CAG76083.1| multidrug transporter [Pectobacterium atrosepticum SCRI1043]
          Length = 1040

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/621 (11%), Positives = 161/621 (25%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGII-----GYRALPVSALPEVDYPTIQ---------VITLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F      +     V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSTQSAGGASVITLQFQLELSLDVAEQDVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D       +        +++   +        +    +  +   +I        
Sbjct: 125 SNLLPNDLPYPPTYSKVNPADPPIMT-LAVTSSAMSMTQVQDMVDNRIAQKISQVAGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +   L     T+  +       N +                    
Sbjct: 184 VSLAGGQRPAVRVRLNAPALAAYGLTSETIRTAITAANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+      +                 I +    +  G  
Sbjct: 236 ------------VTLSANDQMKSVDDYRKLIVAWKNGAPVRLQDVATIEQAAENIYLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L+A                +   S    
Sbjct: 284 ANRQQAIIINVQRQPGANVITTTDSINKMLPALKASLPNSVEVATLTDRTTSIRASVKDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYLFLRNAVATLIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENIARYIEKGEKPLNAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ +SILIS   ++++   M   +       K+ +    +      LI 
Sbjct: 464 IVGRLFREFAVTLAVSILISAVVSLTLTPMMCARMLSHQSLRKQNRFTRASERFFTRLID 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL---GVLANRPVDLS 592
                         + +S+      + +L    +  G        +    V A + V  S
Sbjct: 524 TYGTWLRKVLNHPWLTLSVALGTLLLTILLYIWIPKGFFPIQDNGIIQGTVQAPQTVSFS 583

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    + +    +     + 
Sbjct: 584 NMADRQQRVASIIMKDPTVES 604



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+IY+++R      L     + L +  T       G   N   + A+    G+
Sbjct: 349 LAIALVVMVIYLFLR-NAVATLIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTIATGF 407

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +VV + +    +         +   K   E     +  + +    ++P+   G  
Sbjct: 408 VVDDAIVVIENI---ARYIEKGEKPLNAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDI 464

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FA+ +A  I+++A  S+ +  
Sbjct: 465 VGRLFREFAVTLAVSILISAVVSLTLTP 492



 Score = 44.7 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 85/224 (37%), Gaps = 6/224 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++     + +      A    ++ + +   ++   + I           +  +   +  +
Sbjct: 811  DQFPSTTISFNVASGYALGEAVDAITQAEQQMNLPADITTRFQGSTLAFQSALSSTVWLI 870

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + +AM I + + ++ +   +  ++TL       L    + G + ++ A+  ++ LIG 
Sbjct: 871  VAAIVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMMAGKDLDVIAIIGIILLIGI 930

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D            +   D I ++        + T+MAA +S LP+ +    
Sbjct: 931  VKKNAIMMID--FALAAEREQGMKPYDAIYQACLLRFRPILMTTMAALLSALPLMLSTGV 988

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G  +     + M  G++++   ++F    I L       +  R+
Sbjct: 989  GAELRQPLGVCMVGGLIMSQILTLFTTPVIYLLFDRLATRFRRV 1032


>gi|295132172|ref|YP_003582848.1| AcrB/AcrD/AcrF family membrane transporter [Zunongwangia profunda
           SM-A87]
 gi|294980187|gb|ADF50652.1| AcrB/AcrD/AcrF family membrane transporter [Zunongwangia profunda
           SM-A87]
          Length = 1046

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 77/665 (11%), Positives = 165/665 (24%), Gaps = 46/665 (6%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF-LQMYSDELRSFLKK-EG 85
               + ++P   P               + +            L+     +   +   EG
Sbjct: 28  TALPITQYPDIAPPT-------------ITVSTSYPGANAETILESVIVPIEEQINGVEG 74

Query: 86  IGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           +   +     N   +IT+ F      +  A  V   +   N  L  + K+  + T  ++ 
Sbjct: 75  MTYLTSTATNNGTAEITVFFDQEIDPDIAAVNVQNRVARANPLLPAEVKQTGVTTQKQQT 134

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
            +++                   +    I +I             +    +     P +L
Sbjct: 135 SALMFLSFYSTNKDYDDTFIQNYLKINVIPEIQRVNGVGNVNVFGQKDYAMRIWLQPEKL 194

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
                  + +       +        G     + +   Y ++                  
Sbjct: 195 TAYNLVPSDVIAALNEQSLEAAAGALGE---NNGEAFSYTIKYSGR-------------F 238

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    I      +          I         G +                 +  
Sbjct: 239 KTEKEYKNIIIKALGDSEYLRLKDVAEIELDAQSYNGGSMTKGNPAVNMAIFQTKGSNAR 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
             I+T  +    + A         +          S      T      LV IV+F+ + 
Sbjct: 299 DIIQTIKVKLEDIEANLPEGIEIYIPYDTNNFLNASIDKVVHTLVEAFILVFIVVFIFLQ 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             +  L+   ++ +++I T   L+L G ++ L ++  +VL IG+ VD  I+V E +  + 
Sbjct: 359 DFRSTLIPAIAVPVSIIGTFFFLNLFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHAKI 418

Query: 443 RKNQSV-FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILI 498
            +       +           I    +      + + F  G        F IT+ ++I I
Sbjct: 419 DEGADNAKNATLDAMHEISGAIVSITLVMAAVFIPVTFITGPTGVFYEQFGITLIVAIFI 478

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           S   A+++  A+    ++    K        +           F R     +        
Sbjct: 479 SAVNALTLSPALCALFLKTHNEKEDKKKNFLQK------FYAAFNRGFNATINRYGKSLQ 532

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL--ESLQIGDISFQNFDGEKN 616
                 +   L   +   G                 R  L          S        N
Sbjct: 533 FLYKNKWISALILILAVAGIWWTSSTTPTGFVPDEDRGLLFVNVELPAGASIDRTSQVNN 592

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            L +           + +                    +    + + EL  K I G +  
Sbjct: 593 ELYQKIKDIPGVEGVSVINGRSLISGAGSNYGLGFVKLQDWEERDTDELSLKAITGKLFG 652

Query: 677 AIAML 681
             A +
Sbjct: 653 IAATI 657



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 91/252 (36%), Gaps = 7/252 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +  + L  V       Q  +            +   Q +  ++    + +++  + I   
Sbjct: 255 SEYLRLKDVAEIELDAQSYNGGSMTKGNPAVNMAIFQTKGSNARDIIQTIKVKLEDIEAN 314

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
           +P                  I K +  ++ + I + I ++I    +   L     + + I
Sbjct: 315 LPEGIEIYIPYDTNNFLNASIDKVVHTLVEAFILVFIVVFIFLQDFRSTLIPAIAVPVSI 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T  F  LFG   NL  + A++  IG  V+D +VV + +   +       + ++    +
Sbjct: 375 IGTFFFLNLFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHAKIDEGA--DNAKNATLDA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI-L 820
           ++E  G  V  ++      +P+    G        F I +   I ++A +++ ++  +  
Sbjct: 433 MHEISGAIVSITLVMAAVFIPVTFITGPTGVFYEQFGITLIVAIFISAVNALTLSPALCA 492

Query: 821 LFIYDWRAKNAR 832
           LF+     K  +
Sbjct: 493 LFLKTHNEKEDK 504



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 707  TLGFF---ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              G +    L G++ ++    A++ LIG    + +++ +     ++      S  D    
Sbjct: 907  VFGAYLTTKLAGLQNDIYFQIALIMLIGLLAKNAILIVEFA---IQRRKRGESIVDAAID 963

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                 L   + TS A  + ++P+ +    G     +     A G+++   + +F+   + 
Sbjct: 964  GAKARLRPILMTSFAFILGLMPLVLASGVGAEGNRAIGTGAAGGLLIGTITGVFVIPMLF 1023

Query: 821  LFIYDWRAKNAR 832
            +     + K  +
Sbjct: 1024 ILFQWLQEKIGK 1035


>gi|241206135|ref|YP_002977231.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860025|gb|ACS57692.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1036

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 88/684 (12%), Positives = 187/684 (27%), Gaps = 39/684 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL           + ++P   P              +      
Sbjct: 7   RRPIFAWVIAITIMLAGLLAIF-----TLSISQYPDIAPTTVR---------INATYRGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + L        +       I L+F  S   +    +V   LQ 
Sbjct: 53  SAETVEKSVTTIIEDGMTGLDDLTYMTSTSSTGSASIQLTFGTSADPDIAQVQVQNKLQL 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D     +  T      +++          ++++    +     DQI   E   
Sbjct: 113 VQSQLPSDVIDAGISVTRSTSSILLVGSLVSTDGKRNSVDLGNIMSTSIEDQIQRLEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +   T + ++      N        G +          
Sbjct: 173 SINVFGSG-YAMRVWLDPFKLLKYQLTPSDVTSAIQAQNTQVSVGSLGAQPTIPGQQINV 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++                     I   E             I           
Sbjct: 232 TITAQSQLT-------------TVADFEHIILKVEKDGATVRLSDVSRIEIGQESYGGSS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T         ++  G                   S   
Sbjct: 279 RYNGQPSTGFAVNLAIGANAIDTAARVRSALEVIGRGLPAGVEITYPYDTTPFVELSIEK 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +VL + +   +  L+   ++ + ++ T  +L++ G ++   ++  +V
Sbjct: 339 VVHTLIEAIVLVFVVLLVFLQNLRATLIPTIAVPVVLLGTFGVLAVTGYSINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     + + S   + +         I    +      + + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERIMSEEKLSPLEATEKSMGEITGAIVGIALVLTAVFIPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFF 532
           GG      R F+IT+  ++L+S   A+ +  A+   +        K       N      
Sbjct: 459 GGSTGIIYRQFSITIVSAMLLSALVALVLTPALCATMLKPVGEHRKHRVGDWFNRNFTRS 518

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY--GIDFKGGIQLGVLANRPVD 590
                  I ++  R   V +  L        LFT   +     + +G +   V       
Sbjct: 519 TNGYITTIGYLLKRPIRVMLVFLLVGAGCAYLFTRLPSSFLPQEDQGVLLTIVTTPPGST 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               ++ +E ++      +    +  F        G       V   +K       P  +
Sbjct: 579 TQQTQAVVEKVEKYYRENEKDAVDSVFGALGFGFSGSGQNSAIVFTKLKDFSLRTDPTLS 638

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
            Q+           +    +  ++
Sbjct: 639 AQSVVNRALGNFFAIREAQVFALL 662



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 66/169 (39%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   IS + + + +   ++ W      I  + + I   L    LFG   ++     +
Sbjct: 866  QAPMLYAISVLVVFLCLAALYESWSIPFSVIMAVPVGILGALTAATLFGQANDVYFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT IG +  + +++ +  +       + +   +   ++    L   + TS+A  + V+P+
Sbjct: 926  LTTIGLAAKNAILIVEFAKD---RMESGMGLYEATLEAARLRLRPIIMTSLAFILGVVPL 982

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+    G +   +  I +  G++ A    IF      + I    A   +
Sbjct: 983  AIATGAGSAAQNAIGIGVLGGMLAATMLGIFFVPSFFVVIRRIFATRGK 1031



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G  A+ G   N   + A++  IG  V+D +VV + +     
Sbjct: 361 LRATLIPTIAVPVVLLGTFGVLAVTGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERI 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
           +    +S  +  +KS+ E  G  V  ++      +PMA +GGS       F+I + 
Sbjct: 419 MSEEKLSPLEATEKSMGEITGAIVGIALVLTAVFIPMAFFGGSTGIIYRQFSITIV 474


>gi|262381864|ref|ZP_06075002.1| multidrug resistance protein [Bacteroides sp. 2_1_33B]
 gi|262297041|gb|EEY84971.1| multidrug resistance protein [Bacteroides sp. 2_1_33B]
          Length = 1067

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/694 (9%), Positives = 175/694 (25%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIMVAGII-----GLFTLPVEQYPDIAPPTVM---------VSTTYFGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +        IT+ F      +  A  V   +  
Sbjct: 55  AETMQKSVVAPLEEAINGVEDMTYMTSTATNSGTATITIYFQQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +               S  I      +I       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSMLQIFSLYSPDGSYDENFLSNYISINLKPEILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +     P  + Q     + ++      N        G            
Sbjct: 175 ELMVMG-GDYSMRIWMKPDVMAQYKLIPSDVTSVLAEQNIESATGSLGENSDETYQ---- 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            +       +    +                +I           
Sbjct: 230 ------------YTMKYSGRLLTPEEFGDIVIRSTEDGEVLKLKEIADIELGKESYAYIG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +                         +           S   
Sbjct: 278 QTNGKPGISCMVFQTAGSNATEVNNKIDAFLEEASKDFPKGIEVVKLMSTNDFLYASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   +I +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDIRSTLIPLVAIVVSLIGTFAFMTVAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSN---ITALIATVVL 477
           L IG  VD  I+V E ++        S + +         S I  ++   +   I    +
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASMDAMKGLTSAIVSTSLVFMGVFIPVSFM 457

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
               G     F +TM  ++ IS   A+++  A+   +                 + +   
Sbjct: 458 SGTSGTFYTQFGLTMAAAVGISTVNALTLSPALCAILLKPYINEDGTQKNNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                          + F++ ++    +     +  I L+ T   +   D   G     +
Sbjct: 518 NAAFDSVIKKYKHGVLFFIKRKWLAWSLLACSIVLLIVLMNTTKSSLVPDEDQGTVFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +          + + +     I+        + +       G   +    +  +K     
Sbjct: 578 STASGSSLATTNKIMTNIEQRINQIPQLQSYSKVSGYGLLAGQGSSFGMFILKLKHWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    I  +  + I
Sbjct: 638 PDKEDNVQAVIGQVYGRTADIKDATIFAIAPAMI 671



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/461 (10%), Positives = 143/461 (31%), Gaps = 14/461 (3%)

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
            V++         +    +  +     I  +  ++ + +T T    A I +      D +
Sbjct: 43  TVMVSTTYFGANAETMQKSVVAPLEEAINGVEDMTYMTSTATNSGTATITIYFQQGTDPD 102

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +         ++    +   +                T+++    L+   G     F   
Sbjct: 103 MAAVNVQNRVSKATGQLPAEVTQVGVTTSKRQ-----TSMLQIFSLYSPDGSYDENFLSN 157

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
                L      IS V  +M+    Y     +  + ++++ LIP  +             
Sbjct: 158 YISINLKPEILRISGVGELMVMGGDYSMRIWMKPDVMAQYKLIPSDVTSVLAEQNIESAT 217

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            S+  +               +  +    + + +    ++  ++   +     +      
Sbjct: 218 GSLGENSDETYQYTMKYSGRLLTPEEFGDIVIRSTEDGEVLKLKEIADIELGKESYAYIG 277

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRK 668
                  +            T V   +   + E           +     +  L   I +
Sbjct: 278 QTNGKPGISCMVFQTAGSNATEVNNKIDAFLEEASKDFPKGIEVVKLMSTNDFLYASIHE 337

Query: 669 GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +  +I + I +++ +++        L  +  +++ +  T  F  + G   NL  + A++
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDIRSTLIPLVAIVVSLIGTFAFMTVAGFSINLITLFALV 397

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            +IG  V+D +VV + ++    +   S     +   ++       V TS+      +P++
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASM--DAMKGLTSAIVSTSLVFMGVFIPVS 455

Query: 788 VWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G+       F + MA  + ++  +++ ++  +   +  
Sbjct: 456 FMSGTSGTFYTQFGLTMAAAVGISTVNALTLSPALCAILLK 496



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/410 (9%), Positives = 108/410 (26%), Gaps = 27/410 (6%)

Query: 440  EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
            +   +      ++     + Y    D     + A       G G      +         
Sbjct: 632  KHWDERPDKEDNVQAVIGQVYGRTADIKDATIFAIAPAMIPGYGMGNALEMHTQDKAGGD 691

Query: 500  MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
            + T  +  +  +  +    ++ +       ++      +     +         +     
Sbjct: 692  LTTFFNTTQQYLAALRERPEIATAYSTFDIKYPQWRVDVDAAKCKRAGITPDAVLSTLSG 751

Query: 560  SICLLFTHGLNY-----------------GIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                 +   +N                           + +       LS   +  +   
Sbjct: 752  YYGGQYVSNINRFSKVYKVMIQSDPKYRLDETSLNNTFVRMSNGEMAPLSQFITLTKVYG 811

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
               ++  N                   A   V E     + +         T     + +
Sbjct: 812  AESLARFNMYNSIAVNAVPANGYSSGDAIKAVKETAATSLPKGYGYDFGSITREENQQSN 871

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
              +I  GI  ++I  I   +Y      +      I ++ + +  +  F    G+E N+  
Sbjct: 872  TTIIIFGICILMIYLILSALY----ESFLVPFAVILSVPMGLMGSFLFAKFMGLENNIYL 927

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ LIG      +++ +      +   + +S       +    L   + T++     
Sbjct: 928  QTGLIMLIGLLAKTAILLTE---YATQRRLSGMSLTSAALSAAKVRLRPILMTALTMIFG 984

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +LP+ V    G +   S       G+++   + +FI   + +     + K
Sbjct: 985  LLPLIVSNGVGANGNRSLGTGAVGGMLIGTLALLFIVPCLFITFQYLQEK 1034


>gi|255013852|ref|ZP_05285978.1| putative multidrug resistance/siderophore transport related,
           membrane protein [Bacteroides sp. 2_1_7]
 gi|301310413|ref|ZP_07216352.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           20_3]
 gi|300831987|gb|EFK62618.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           20_3]
          Length = 1067

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/694 (9%), Positives = 175/694 (25%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIMVAGII-----GLFTLPVEQYPDIAPPTVM---------VSTTYFGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +        IT+ F      +  A  V   +  
Sbjct: 55  AETMQKSVVAPLEEAINGVEDMTYMTSTATNSGTATITIYFQQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +               S  I      +I       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSMLQIFSLYSPDGSYDENFLSNYISINLKPEILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +     P  + Q     + ++      N        G            
Sbjct: 175 ELMVMG-GDYSMRIWMKPDVMAQYKLIPSDVTSVLAEQNIESATGSLGENSDETYQ---- 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            +       +    +                +I           
Sbjct: 230 ------------YTMKYSGRLLTPEEFGDIVIRSTEDGEVLKLKEIADIELGKESYAYIG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +                         +           S   
Sbjct: 278 QTNGKPGISCMVFQTAGSNATEVNNKIDAFLEEASKDFPKGIEVVKLMSTNDFLYASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   +I +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDIRSTLIPLVAIVVSLIGTFAFMTVAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSN---ITALIATVVL 477
           L IG  VD  I+V E ++        S + +         S I  ++   +   I    +
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASMDAMKGLTSAIVSTSLVFMGVFIPVSFM 457

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
               G     F +TM  ++ IS   A+++  A+   +                 + +   
Sbjct: 458 SGTSGTFYTQFGLTMAAAVGISTVNALTLSPALCAILLKPYINEDGTQKNNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                          + F++ ++    +     +  I L+ T   +   D   G     +
Sbjct: 518 NAAFDSVIKKYKHGVLFFIKRKWLAWSLLACSIVLLIVLMNTTKSSLVPDEDQGTVFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +          + + +     I+        + +       G   +    +  +K     
Sbjct: 578 STASGSSLATTNKIMTNIEQRINQIPQLQSYSKVSGYGLLAGQGSSFGMFILKLKHWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    I  +  + I
Sbjct: 638 PDKEDNVQAVIGQVYGRTADIKDATIFAIAPAMI 671



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/461 (10%), Positives = 143/461 (31%), Gaps = 14/461 (3%)

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
            V++         +    +  +     I  +  ++ + +T T    A I +      D +
Sbjct: 43  TVMVSTTYFGANAETMQKSVVAPLEEAINGVEDMTYMTSTATNSGTATITIYFQQGTDPD 102

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +         ++    +   +                T+++    L+   G     F   
Sbjct: 103 MAAVNVQNRVSKATGQLPAEVTQVGVTTSKRQ-----TSMLQIFSLYSPDGSYDENFLSN 157

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
                L      IS V  +M+    Y     +  + ++++ LIP  +             
Sbjct: 158 YISINLKPEILRISGVGELMVMGGDYSMRIWMKPDVMAQYKLIPSDVTSVLAEQNIESAT 217

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            S+  +               +  +    + + +    ++  ++   +     +      
Sbjct: 218 GSLGENSDETYQYTMKYSGRLLTPEEFGDIVIRSTEDGEVLKLKEIADIELGKESYAYIG 277

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRK 668
                  +            T V   +   + E           +     +  L   I +
Sbjct: 278 QTNGKPGISCMVFQTAGSNATEVNNKIDAFLEEASKDFPKGIEVVKLMSTNDFLYASIHE 337

Query: 669 GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +  +I + I +++ +++        L  +  +++ +  T  F  + G   NL  + A++
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDIRSTLIPLVAIVVSLIGTFAFMTVAGFSINLITLFALV 397

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            +IG  V+D +VV + ++    +   S     +   ++       V TS+      +P++
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASM--DAMKGLTSAIVSTSLVFMGVFIPVS 455

Query: 788 VWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G+       F + MA  + ++  +++ ++  +   +  
Sbjct: 456 FMSGTSGTFYTQFGLTMAAAVGISTVNALTLSPALCAILLK 496



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/410 (9%), Positives = 108/410 (26%), Gaps = 27/410 (6%)

Query: 440  EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
            +   +      ++     + Y    D     + A       G G      +         
Sbjct: 632  KHWDERPDKEDNVQAVIGQVYGRTADIKDATIFAIAPAMIPGYGMGNALEMHTQDKAGGD 691

Query: 500  MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
            + T  +  +  +  +    ++ +       ++      +     +         +     
Sbjct: 692  LTTFFNTTQQYLAALRERPEIATAYSTFDIKYPQWRVDVDAAKCKRAGITPDAVLSTLSG 751

Query: 560  SICLLFTHGLNY-----------------GIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                 +   +N                           + +       LS   +  +   
Sbjct: 752  YYGGQYVSNINRFSKVYKVMIQSDPKYRLDEASLNNTFVRMSNGEMAPLSQFITLTKVYG 811

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
               ++  N                   A   V E     + +         T     + +
Sbjct: 812  AESLARFNMYNSIAVNAVPANGYSSGDAIKAVKETAATSLPKGYGYDFGSITREENQQSN 871

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
              +I  GI  ++I  I   +Y      +      I ++ + +  +  F    G+E N+  
Sbjct: 872  TTIIIFGICILMIYLILSALY----ESFLVPFAVILSVPMGLMGSFLFAKFMGLENNIYL 927

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ LIG      +++ +      +   + +S       +    L   + T++     
Sbjct: 928  QTGLIMLIGLLAKTAILLTE---YATQRRLSGMSLTSAALSAAKVRLRPILMTALTMIFG 984

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +LP+ V    G +   S       G+++   + +FI   + +     + K
Sbjct: 985  LLPLIVSNGVGANGNRSLGTGAVGGMLIGTLALLFIVPCLFITFQYLQEK 1034


>gi|150007619|ref|YP_001302362.1| putative multidrug resistance/siderophore transport related,
           membrane protein [Parabacteroides distasonis ATCC 8503]
 gi|149936043|gb|ABR42740.1| putative multidrug resistance/siderophore transport related,
           membrane protein [Parabacteroides distasonis ATCC 8503]
          Length = 1067

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/694 (9%), Positives = 175/694 (25%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIMVAGII-----GLFTLPVEQYPDIAPPTVM---------VSTTYFGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +        IT+ F      +  A  V   +  
Sbjct: 55  AETMQKSVVAPLEEAINGVEDMTYMTSTATNSGTATITIYFQQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +               S  I      +I       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSMLQIFSLYSPDGSYDENFLSNYISINLKPEILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +     P  + Q     + ++      N        G            
Sbjct: 175 ELMVMG-GDYSMRIWMKPDVMAQYKLIPSDVTSVLAEQNIESATGSLGENSDETYQ---- 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            +       +    +                +I           
Sbjct: 230 ------------YTMKYSGRLLTPEEFGDIVIRSTEDGEVLKLKEIADIELGKESYAYIG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +                         +           S   
Sbjct: 278 QTNGKPGISCMVFQTAGSNATEVNNKIDAFLEEASKDFPKGIEVVKLMSTNDFLYASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   +I +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDIRSTLIPLVAIVVSLIGTFAFMTVAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSN---ITALIATVVL 477
           L IG  VD  I+V E ++        S + +         S I  ++   +   I    +
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASMDAMKGLTSAIVSTSLVFMGVFIPVSFM 457

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
               G     F +TM  ++ IS   A+++  A+   +                 + +   
Sbjct: 458 SGTSGTFYTQFGLTMAAAVGISTVNALTLSPALCAILLKPYINEDGTQKNNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                          + F++ ++    +     +  I L+ T   +   D   G     +
Sbjct: 518 NAAFDSVIKKYKHGVLFFIKRKWLAWSLLACSIVLLIVLMNTTKSSLVPDEDQGTVFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +          + + +     I+        + +       G   +    +  +K     
Sbjct: 578 STASGSSLATTNKIMTNIEQRINQIPQLQSYSKVSGYGLLAGQGSSFGMFILKLKHWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    I  +  + I
Sbjct: 638 PDKEDNVQAVIGQVYGRTADIKDATIFAIAPAMI 671



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 50/461 (10%), Positives = 143/461 (31%), Gaps = 14/461 (3%)

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
            V++         +    +  +     I  +  ++ + +T T    A I +      D +
Sbjct: 43  TVMVSTTYFGANAETMQKSVVAPLEEAINGVEDMTYMTSTATNSGTATITIYFQQGTDPD 102

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +         ++    +   +                T+++    L+   G     F   
Sbjct: 103 MAAVNVQNRVSKATGQLPAEVTQVGVTTSKRQ-----TSMLQIFSLYSPDGSYDENFLSN 157

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
                L      IS V  +M+    Y     +  + ++++ LIP  +             
Sbjct: 158 YISINLKPEILRISGVGELMVMGGDYSMRIWMKPDVMAQYKLIPSDVTSVLAEQNIESAT 217

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            S+  +               +  +    + + +    ++  ++   +     +      
Sbjct: 218 GSLGENSDETYQYTMKYSGRLLTPEEFGDIVIRSTEDGEVLKLKEIADIELGKESYAYIG 277

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRK 668
                  +            T V   +   + E           +     +  L   I +
Sbjct: 278 QTNGKPGISCMVFQTAGSNATEVNNKIDAFLEEASKDFPKGIEVVKLMSTNDFLYASIHE 337

Query: 669 GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +  +I + I +++ +++        L  +  +++ +  T  F  + G   NL  + A++
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDIRSTLIPLVAIVVSLIGTFAFMTVAGFSINLITLFALV 397

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            +IG  V+D +VV + ++    +   S     +   ++       V TS+      +P++
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASM--DAMKGLTSAIVSTSLVFMGVFIPVS 455

Query: 788 VWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G+       F + MA  + ++  +++ ++  +   +  
Sbjct: 456 FMSGTSGTFYTQFGLTMAAAVGISTVNALTLSPALCAILLK 496



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/410 (9%), Positives = 108/410 (26%), Gaps = 27/410 (6%)

Query: 440  EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
            +   +      ++     + Y    D     + A       G G      +         
Sbjct: 632  KHWDERPDKEDNVQAVIGQVYGRTADIKDATIFAIAPAMIPGYGMGNALEMHTQDKAGGD 691

Query: 500  MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
            + T  +  +  +  +    ++ +       ++      +     +         +     
Sbjct: 692  LTTFFNTTQQYLAALRERPEIATAYSTFDIKYPQWRMDVDAAKCKRAGITPDAVLSTLSG 751

Query: 560  SICLLFTHGLNY-----------------GIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                 +   +N                           + +       LS   +  +   
Sbjct: 752  YYGGQYVSNINRFSKVYKVMIQSDPKYRLDEASLNNTFVRMSNGEMAPLSQFITLTKVYG 811

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
               ++  N                   A   V E     + +         T     + +
Sbjct: 812  AESLARFNMYNSIAVNAVPANGYSSGDAIKAVKETAATSLPKGYGYDFGSITREENQQSN 871

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
              +I  GI  ++I  I   +Y      +      I ++ + +  +  F    G+E N+  
Sbjct: 872  TTIIIFGICILMIYLILSALY----ESFLVPFAVILSVPMGLMGSFLFAKFMGLENNIYL 927

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ LIG      +++ +      +   + +S       +    L   + T++     
Sbjct: 928  QTGLIMLIGLLAKTAILLTE---YATQRRLSGMSLTSAALSAAKVRLRPILMTALTMIFG 984

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +LP+ V    G +   S       G+++   + +FI   + +     + K
Sbjct: 985  LLPLIVSNGVGANGNRSLGTGAVGGMLIGTLALLFIVPCLFITFQYLQEK 1034


>gi|159037427|ref|YP_001536680.1| protein-export membrane protein SecF [Salinispora arenicola
           CNS-205]
 gi|157916262|gb|ABV97689.1| protein-export membrane protein SecF [Salinispora arenicola
           CNS-205]
          Length = 394

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 136/298 (45%), Gaps = 15/298 (5%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-----NRPVDLSVVRSNL 598
             R     ++   ++ S+        + GI+F GG  + V A      +  +        
Sbjct: 21  GRRRVWFSVAATLAMISVLSFAFLRFDLGIEFAGGNSIQVPASVGTLEQAEETVDAALAA 80

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           E      ++ Q   G  +    ++     +     V   V     E          E V 
Sbjct: 81  EGGGAEVVTAQKVGGTGDDFYEMRTSQLSAEQANAVKAAVA---QEFGIPVGDVGGEQVS 137

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
                ++  + ++G++I  + +++Y+ +RF+W  A+GA+ +L++++  T G ++L G E 
Sbjct: 138 QAWGSQVTERAVLGLLIFLVLVMVYLVLRFEWRMAVGAVASLLMNLILTAGIYSLVGFEV 197

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTS 776
             + V   LT++G+++ D VVV+D++++N +  T   + ++ +  + +IN++L RS+ TS
Sbjct: 198 TPSTVVGFLTILGFALYDVVVVFDKVQENTRGITANNNQTYGEAANLAINQSLMRSLNTS 257

Query: 777 MAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + A + V  +       +G   +    + +  G+ VA  SSI +A P+L+ + +   +
Sbjct: 258 IVALLPVGGLLFIGAGLFGAGTLKDLGLVLFVGMAVAFFSSITLATPLLVLLKNQEPR 315


>gi|298483105|ref|ZP_07001286.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. D22]
 gi|298270849|gb|EFI12429.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. D22]
          Length = 1052

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/569 (12%), Positives = 168/569 (29%), Gaps = 41/569 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     T   +S      N +  G  F +     +   + 
Sbjct: 172 TVSISGAPQREIQVYCDPNKLEAYHLTIETISSIIGAENKNIPGGNFDIGSETYALRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  +++ + +                            F      I   +       
Sbjct: 232 EFDDSRQLADVVVGTH--------------------NGANVFLRDVARIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKIGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAISGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVVASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G +    +     M   + IS   A+S+   +    +   KK   +     +      D 
Sbjct: 452 GMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKPSKMFKLFFTPIEKALDG 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT 566
           + I + +   W V    +  +  I     
Sbjct: 512 LDIWYAKMLNWAVRHRPIVIVGCIAFFIV 540



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 90/245 (36%), Gaps = 7/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   +V  +    +SV  ++ +     ++ + +P     
Sbjct: 256 DVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKI 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +         I      V+ + + ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GVIVDTSDNILNTIDSLTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AISGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V +++       P+ +     G +       M   + ++  +++ +   +   +   + 
Sbjct: 433 VVASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQK 492

Query: 829 KNARI 833
           K +++
Sbjct: 493 KPSKM 497



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 8/250 (3%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                   SV   ++  +            ++  +V +      +     V    K     
Sbjct: 782  IYNAQGQSVRVKDVGKVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNKVIDKM 841

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
             +P                     G + ++I  + + I +  +F+   +    + +L   
Sbjct: 842  DLPGDVTIQISGSYEDQQDSFRDLGTLAILI-VVLVFIVMAAQFESLTYPFIIMFSLPFA 900

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
             +  L          ++ ++   + LIG  V + +V+ D +          ++  + +  
Sbjct: 901  FSGVLMALFFTNSTLSVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGLAVLNSVVT 957

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + T+    + ++PMA+ GG    +    AI +  G+ ++   ++ +   + 
Sbjct: 958  AGKSRLRPVLMTTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTISTVLTLILIPTLY 1017

Query: 821  LFIYDWRAKN 830
                    KN
Sbjct: 1018 CVFAGTGIKN 1027


>gi|254428231|ref|ZP_05041938.1| RND transporter, HAE1 family [Alcanivorax sp. DG881]
 gi|196194400|gb|EDX89359.1| RND transporter, HAE1 family [Alcanivorax sp. DG881]
          Length = 1064

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/547 (10%), Positives = 150/547 (27%), Gaps = 36/547 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +GL+       P   +  +P  +P + +            V     
Sbjct: 10  RPIFAAVLSIIIFAVGLISI-----PNLPVSEYPEVVPPSVVVR---------TVYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFL 119
              +   +    +E  + +  EG+         + +   T++F      ++   +V   +
Sbjct: 56  PKVIAETVATPLEEAINGV--EGMMYLKSVAGSDGVLQMTVTFRPDIDADDATVRVQNRV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++  + T  +    +++            +           D +     
Sbjct: 114 SQALARLPEDVRRQGVTTQKQSPTFLMVVHLTSPDGRYDTLYLRNYARLHVRDVLARIRG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    DP ++     T + +       N        G   +  SD  
Sbjct: 174 VGDAQIFGGGDYAMRAWLDPEKIAARGLTASDVVGAMREQNVQVSAGQLGAEPMPGSDFL 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             +       +                +    +                 +         
Sbjct: 234 TLINAQGRLRTVE--------------EFGDVVLKSGAQGEIVRLSDVARLELGAGDYTL 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L +              +     +        +                      S 
Sbjct: 280 RSQLDSKDAVAIGIFQAPGANALEIRDQVITAMDEIATRFPQGVKYEAVYDTTVFVSDSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV++V+ + +   +  ++   ++ ++V+ T A L LLG ++   ++ G
Sbjct: 340 KSVIKTLIEAVLLVVLVVTLFLQTWRASIIPLLAVPISVVGTFAALYLLGYSINTLTLFG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IG+ VD  I+V E +     +  +   +           I    +      + + F
Sbjct: 400 LVLAIGIVVDDAIVVVENVERNIEEGLTPLAAAHQAMREVSGPIVAIGLVLCAVFIPMAF 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R FA+T+ +S +IS   ++++  A+   +++        +  +        
Sbjct: 460 LSGVTGQFYRQFAVTIAISTVISTINSLTLSPALAAMLLKPHDAPKDRLTRIIDTLFGWL 519

Query: 537 CIAIQFM 543
                  
Sbjct: 520 FRPFNRF 526



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 80/243 (32%), Gaps = 11/243 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V +S + +  E      +   N     +       Q   S     VL  +  ++    
Sbjct: 800  DMVPISSMVTITEDFGPDPVLRYNGYPAADLAGEADPQVLSSAQAMAVLNRIADEVLPNG 859

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                  +                ++   +S + + + +   ++ W   L  I  + + + 
Sbjct: 860  MTFEWTDLSYQQATQGN----AALLVFPLSILLVFLVLAALYESWTLPLAVILIVPMCML 915

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L     FG + N+     ++ LI  +  + +++ +  R+   L        +   ++ 
Sbjct: 916  SALMGVWFFGGDNNIFVQVGLVVLIALACKNAILIVEFARE---LEMQGKGVVEAALEAC 972

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS+    +VLP+ +    G  V  +  + + FG++      +F+     + 
Sbjct: 973  RLRLRPIIMTSITFTAAVLPLVLGSGAGAEVRQALGVALFFGMLGVTLFGLFLTPVFYVA 1032

Query: 823  IYD 825
            +  
Sbjct: 1033 LRK 1035



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 57/137 (41%), Gaps = 7/137 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T     L G   N   +  ++  IG  V+D +VV + + +N++
Sbjct: 364 WRASIIPLLAVPISVVGTFAALYLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNIE 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                ++      +++ E  G  V   +      +PMA   G        FA+ +A   V
Sbjct: 424 E---GLTPLAAAHQAMREVSGPIVAIGLVLCAVFIPMAFLSGVTGQFYRQFAVTIAISTV 480

Query: 807 VAASSSIFIAAPILLFI 823
           ++  +S+   +P L  +
Sbjct: 481 ISTINSL-TLSPALAAM 496


>gi|146307453|ref|YP_001187918.1| acriflavin resistance protein [Pseudomonas mendocina ymp]
 gi|145575654|gb|ABP85186.1| acriflavin resistance protein [Pseudomonas mendocina ymp]
          Length = 1030

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 152/550 (27%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           +   P         L L              
Sbjct: 10  RPVATTLLMVAIFLSGLIA-----YRLLPVSALPEVDYPTIRVLTL---------YPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F           +V   +   
Sbjct: 56  PDVMTSAVTAPLERQFGQMAGLKQMSSTSSGGASVITLRFNLEVPLAVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + VL+   +        + +  +  +   ++  +     
Sbjct: 116 SNLLPGDLPAPPVYNKVNPADTPVLT-LAVTSSAMPLPQVNDLVDTRLAQKLAQTSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +P  L     + A +       N ++    F              
Sbjct: 175 VTLAGGQRPAVRIRVNPEALASYGLSLADVRSLITASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   KT     ++                 I            
Sbjct: 224 ---------TRVSQLDANDQLKTVDEYRELILSYQNGAALRLKDVAEIIDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L  G        V          +    
Sbjct: 275 ADRNQAVLVNVQRQPGANVIEVVDRIQTLLPHLTEGLPASVEVKVLTDRTQTIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      ++    + L++I T  ++ L G T+   ++  + +
Sbjct: 335 QHELLLAIALVVMVTFLFLRKLSATIIPSIVVPLSLIGTFGVMYLAGFTINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENIARHLEEGETPLEAALKGARQIGFTLVSLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +K +       +    I   I 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKAEKPEEEGRFYRAAGGFIDAMIE 514

Query: 540 IQFMRARFWG 549
              +  ++  
Sbjct: 515 RYGVWLQWVL 524



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 65/149 (43%), Gaps = 9/149 (6%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+ ++++R K    +     + L +  T G   L G   N   + A+    G+
Sbjct: 340 LAIALVVMVTFLFLR-KLSATIIPSIVVPLSLIGTFGVMYLAGFTINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +  +   K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---ARHLEEGETPLEAALKGARQ-IGFTLVSLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAA 817
           V+      FAI +A  I+++   S+ +  
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTP 483



 Score = 45.1 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 13/95 (13%), Positives = 36/95 (37%), Gaps = 5/95 (5%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +        ++    I ++        + T++AA    +P+ +    G  + 
Sbjct: 927  IMMIDFALE--AERNQGMAPEAAIYQAALLRFRPILMTTLAALFGAIPLMLASGSGAELR 984

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                + M  G++V+   ++F    I L+      +
Sbjct: 985  QPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRLSRR 1019


>gi|298369532|ref|ZP_06980849.1| multiple transferable resistance system protein MtrD [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298282089|gb|EFI23577.1| multiple transferable resistance system protein MtrD [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 1077

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/593 (10%), Positives = 159/593 (26%), Gaps = 48/593 (8%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF----LKK 83
               + ++PS                  + L           ++     +       +  
Sbjct: 28  RSLPVSQYPSVAAPT-------------ITLTATYPGASAQVMEDSVLAVIERNMYGVDG 74

Query: 84  EGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                 S        ++++F     ++     V   L  V + L    ++  +  +  ++
Sbjct: 75  LDYMTTSADSSGSGSVSITFTPETDEDLAQVDVQNKLSEVLNNLPATVQQYGVTVSKARD 134

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
             +++   + D  +    E +    R  + ++   +   +          +    DP +L
Sbjct: 135 NFLMIVMLSSD--VHSIEEMNDYAQRNIVPELQRIDGVGKVQLFGAQR-AMRIWVDPKKL 191

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           +    + + ++      N        G             V  + ++S            
Sbjct: 192 QNYNLSFSTVTNALSAQNVQISAGSIGSLPAVQGQTISATVTAQGQLS------------ 239

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    I          +      +   +        L                +  
Sbjct: 240 -TAEEFGNIILVSNTDGSNVYLKDVAKVSLGMEDYSASIRLNGVNTTGMAVMLSNSGNAL 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T        A L+                     S      T      LV +V+F+ + 
Sbjct: 299 ATATAVQEKMATLKKYFPQGMSWKNPYNTSKFVDLSIQKVIHTLLEAIALVFLVMFLFLQ 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             ++ L+    + ++++   A +S +G ++ + ++  +VL IG+ VD  I+V E +    
Sbjct: 359 NIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENVERIM 418

Query: 443 -RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILI 498
             +      +      +    +       +   V L  F    G   + FA+TM  SI  
Sbjct: 419 ATEGLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMAASIAF 478

Query: 499 SMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
           S F A+++  A+   +           +       +    +        +A    +    
Sbjct: 479 SAFLALTLTPALCATMLKPIPKGHHEEKKGFFGWFNKKFTAWTHGYEGWVAKVLRKTFRM 538

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            +    L  +     +         + +G I + V            + L  +
Sbjct: 539 MIVYIGLAVVGVFLFMRLPTAFLPTEDQGFIMVSVQLPAGATKERTDATLAQV 591



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 94/249 (37%), Gaps = 6/249 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   I +       V L  V      ++    S +        +  +    G+++A    
Sbjct: 244 FGNIILVSNTDGSNVYLKDVAKVSLGMEDYSASIRLNGVNTTGMAVMLSNSGNALATATA 303

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           ++     + +  P            K     I+K I  ++ +   + + +++  +   + 
Sbjct: 304 VQEKMATLKKYFPQGMSWKNPYNTSKFVDLSIQKVIHTLLEAIALVFLVMFLFLQNIRYT 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + +     F +  G+  N+  + A++ +IG  V+D +VV + +     + T 
Sbjct: 364 LIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMATE 421

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +  ++   K++ +  G  +  +       +P+A++ G+       FA+ MA  I  +A 
Sbjct: 422 GLPPKEATKKAMGQISGAVIGITAVLISVFVPLAMFSGATGNIYKQFALTMAASIAFSAF 481

Query: 811 SSIFIAAPI 819
            ++ +   +
Sbjct: 482 LALTLTPAL 490



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 52/543 (9%), Positives = 139/543 (25%), Gaps = 60/543 (11%)

Query: 339  SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW-------GLVAD 391
                K         G              +  GL ++ +F+ +            G +  
Sbjct: 512  WFNKKFTAWTHGYEGWVAKVLRKTFRMMIVYIGLAVVGVFLFMRLPTAFLPTEDQGFIMV 571

Query: 392  FSIF----------LNVILTLALLSLLGATLTLPSIAGIVLG-IGLAVDSNILVNERIRE 440
                            +     L   +     + +++G      G  +     + +   E
Sbjct: 572  SVQLPAGATKERTDATLAQVTQLAKSIPEIENIITVSGFSFSGSGQNMAMGFAMLKDWNE 631

Query: 441  ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
                                 T+ D    A+    ++         G  +T+ L    + 
Sbjct: 632  RKTPGSDAESVAGKLTGMMMGTLKDGFGIAVTPPPIM-----ELGNGSGLTINLQDRNNT 686

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
              A  + +   +                +        + I   RA     GIS      +
Sbjct: 687  GHAALLAKRNELIQKMRASGLFDPSTVRASGLEDASQLKIDINRAAAAAQGISFSDIRTA 746

Query: 561  ICLLFTHGLNYGIDFKGG---IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
            +              +G    + +   AN  +  + + +       G     +     ++
Sbjct: 747  LATSLGSSYVNDFPNQGRLQRVMVQADANSRMQPADILNLTVPNSSGVAVPLSTIATVSW 806

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-------- 669
               ++     +      L                    +        L   G        
Sbjct: 807  ENGMEQSVRFNGYPAMSLSASPATGVSTGQAMAAVQKMVDEMGSGYSLEWGGQSREEAKG 866

Query: 670  ----IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG--------- 715
                ++   +S  A+ + +   ++ W   L  I  L++ +        + G         
Sbjct: 867  GSQTLILYALSIAAVFLVLAALYESWSIPLAVI--LVIPLGLIGAALGVTGRNLFEGLLG 924

Query: 716  ----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
                   ++      +T++G S  + +++ +  +    L     S       + +     
Sbjct: 925  KVPSFTNDIYFQVGFITVMGLSAKNAILIIEFAKD---LQAQGKSALQAALAAAHLRFRP 981

Query: 772  SVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + TS A  + V+P+ +  G+      +    + +G+++    S+F+     + +  +  
Sbjct: 982  IIMTSFAFILGVVPLYIASGASSASQRAIGTTVLWGMLIGTILSVFLVPLFYVIVRKFFK 1041

Query: 829  KNA 831
            + A
Sbjct: 1042 ETA 1044


>gi|300024421|ref|YP_003757032.1| acriflavin resistance protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526242|gb|ADJ24711.1| acriflavin resistance protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 1044

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/630 (13%), Positives = 187/630 (29%), Gaps = 45/630 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L++++  +GLL        Q  + RFP+        L         +     
Sbjct: 11  RRPVPAIVLFAVLMLLGLLS-----FRQLPVTRFPNIDIPLISIL---------ITQSGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    +   + F      +   + V   L  
Sbjct: 57  APAELETQVTKIVEDSVANITGVKHITSTLTDGTSTTIIEFRLETNTDRALNDVKDALAK 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L     + ++     +  +I+              + S  +      ++  ++   
Sbjct: 117 VRGDLPRTIDEPVIERIDVEGQAILT--FAATSPGMTLEQLSWHVDDVVKRRLQATKGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++    DP +L     + A ++                         N  
Sbjct: 175 RVERYGGVDREIRVNLDPDKLLAYGISAADVNKQV-------------------FATNVD 215

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   + E+ G      T     +             G     +     +         GR
Sbjct: 216 LGSGRGEVGGQEQAIRTLAGARQITALADAKIILAGGREVRLKDLGTVVDGASEQRAFGR 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +   PV++      + + S   ++  A   +      + P       +  V    G+   
Sbjct: 276 LNGEPVVS--FSVFRTKGSSELSVSDAVNESLKELQAADPEVRLTKIDDAVSYTRGNYVA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+F+ +   +  +++  ++ L  I T   +S +G +L L S+ GI 
Sbjct: 334 AMEALIEGAVLAVLVVFLFLRNIRATIISAIALPLAAIPTFWAISAMGFSLNLVSLLGIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +  + +           +    +T +     + F G
Sbjct: 394 LATGILVDDAIVEIENIVRHMRMGKKPYRAALEAADEIGLAVIAITLTIVAIFAPVSFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F +T+ +++L S+  A  I   M  +++     + I   P     L+    
Sbjct: 454 GIAGQYFRQFGMTVAVAVLFSLLVARLITPMMAAYLM-----RPIPEKPHVDGPLMRTYT 508

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
               M  R   + +    ++ S  +  T  L  G          V+A      + +    
Sbjct: 509 RFLQMTLRHPYLTLISGVALFSASVYATTLLPTGFLPDEDTSRVVVAVELPPGTQLDETS 568

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           +         +     +   V     P   
Sbjct: 569 KKTDRMVTVLRAIPEVRQVFVLGGTSPTGQ 598



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/248 (9%), Positives = 76/248 (30%), Gaps = 6/248 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +   R V L  + + ++         +            + +    ++ +  +    K
Sbjct: 247 IILAGGREVRLKDLGTVVDGASEQRAFGRLNGEPVVSFSVFRTKGSSELSVSDAVNESLK 306

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           ++    P   +   +          +      +  + +A+L+           + +   L
Sbjct: 307 ELQAADPEVRLTKIDDAVSYTRGNYVAAMEALIEGAVLAVLVVFLFLRNIRATIISAIAL 366

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L    T    +  G   NL ++  +    G  V+D +V  + +   ++           
Sbjct: 367 PLAAIPTFWAISAMGFSLNLVSLLGITLATGILVDDAIVEIENI---VRHMRMGKKPYRA 423

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             ++ +E     +  ++       P++  G   G     F + +A  ++ +   +  I  
Sbjct: 424 ALEAADEIGLAVIAITLTIVAIFAPVSFMGGIAGQYFRQFGMTVAVAVLFSLLVARLITP 483

Query: 818 PILLFIYD 825
            +  ++  
Sbjct: 484 MMAAYLMR 491



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 6/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              +  +  + +L L          +     ++     +L L+G    + +++ D   + +
Sbjct: 865  SVFQPVTILLSLPLSFGGVALSLLVTDNSISMPVYIGLLMLMGIVTKNAIMLVDFAIEEI 924

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                        I  +  +     + T++A    +LP A     GG      AI +  G+
Sbjct: 925  ANGIERG---VAIVDAGRKRARPIIMTTLAMAAGMLPSAFALGDGGEFRAPMAIAVIGGL 981

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            +V+   S+         + D+     RI
Sbjct: 982  LVSTLLSLIFVPSFFTVMDDFGWLMQRI 1009


>gi|307823117|ref|ZP_07653347.1| acriflavin resistance protein [Methylobacter tundripaludum SV96]
 gi|307735892|gb|EFO06739.1| acriflavin resistance protein [Methylobacter tundripaludum SV96]
          Length = 1041

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/582 (10%), Positives = 161/582 (27%), Gaps = 38/582 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +  +G+L           +   P                    +     
Sbjct: 20  RPVATSLLMVAMLLVGILA-----YRMLPVSALPQVDYPTIQ---------VVTLYPGAS 65

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +     + ITL F  +   +     V   +   
Sbjct: 66  PEVMTSVVTAPLERQFGQMPGLTQMSSTSSGGASVITLQFNLNLDLDIAEQTVQAAINAA 125

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D  +  + +      + +++     + +    +    +  +   +I        
Sbjct: 126 ANFLPNDLPQAPIYSKVNPADTPIMTLAVSSKALP-LFKVEDLVDTRLAQKIAQLSGVGM 184

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L     +   +       N ++   MF          +   
Sbjct: 185 VSISGGQRPAVRIQANHKALAAYGISLEDVRSAIAAANVNQPKGMFNGPMRSAIIDSNDQ 244

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                      D+      A          +      V     
Sbjct: 245 LRSAAE--------------------YQDLVVAYRNAAPVRLSEVAEVIDGAENVRLAAW 284

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L+A        +           S    
Sbjct: 285 ANKDAAVIVNIQRQPGANVIEVVDRIKELLPKLQASLPLSVEVLPLTDRTVTIRASVHDV 344

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T A++ L   ++   ++  + +
Sbjct: 345 QFELLLAVALVVMVIFLFLRNVPATIIPGVAVPLSLVGTFAVMYLAEFSINNLTLMALTI 404

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     + +S   +   G  +   TI     + +   + L F G 
Sbjct: 405 ATGFVVDDAIVVIENISRYIERGESPLKAALKGSEQIGFTIISLTFSLVAVLIPLLFMGD 464

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++   +  +          LI     
Sbjct: 465 VVGRLFREFAITLAVAILISAIVSLTLTPMMCAKLLHPHEEHAEKPGDDWFDKLIAAYGR 524

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                 +   + +S+ F+  ++ +     +  G        +
Sbjct: 525 SLEWVMQRQVLTMSVFFATAALTVALYIFIPKGFFPVQDTGI 566



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++ + M+I++++R      +     + L +  T     L     N   + A+    G+
Sbjct: 350 LAVALVVMVIFLFLR-NVPATIIPGVAVPLSLVGTFAVMYLAEFSINNLTLMALTIATGF 408

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +VV + +    +      S      K   +     +  + +    ++P+   G  
Sbjct: 409 VVDDAIVVIENI---SRYIERGESPLKAALKGSEQIGFTIISLTFSLVAVLIPLLFMGDV 465

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FAI +A  I+++A  S+ +  
Sbjct: 466 VGRLFREFAITLAVAILISAIVSLTLTP 493


>gi|307326764|ref|ZP_07605956.1| protein-export membrane protein SecD [Streptomyces violaceusniger
           Tu 4113]
 gi|306887527|gb|EFN18521.1| protein-export membrane protein SecD [Streptomyces violaceusniger
           Tu 4113]
          Length = 593

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 111/553 (20%), Positives = 205/553 (37%), Gaps = 54/553 (9%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD---- 61
             VIL +++   G +    +  P+                LG+DL GG+   LE      
Sbjct: 21  LAVILIAIVALTGGMFVSGHTTPR----------------LGIDLAGGTSFTLEAKNQPG 64

Query: 62  -EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFL 119
             +      +      +   +   G+    ++    K I ++       +    +V    
Sbjct: 65  KPNAINTDNMNTAVSIIERRVNGLGVSEAEVQTQGEKHIIVNIPKGTNAKQARQQVGTTA 124

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM--------------- 164
           Q     +            +        +    D                          
Sbjct: 125 QLYFRPVATTTSGQKTPEPSSTPSPSASAGGKGDDKGGKPSGTPSASSSASTSSSASPST 184

Query: 165 ------EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
                 E ++           +                Q+    +       K +    +
Sbjct: 185 QGRALSEGLKADKKPSETPSPSNTPKPDPSKNPPGSTSQEELAKQFAALDCTKPAARAAV 244

Query: 219 PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD-PKTHKPVVDISFDEM 277
            + +               G+   V    E+ G  ++ A+A F+       +V + F+  
Sbjct: 245 ADKAANAKPSDPVLACSEKGDSKFVLGPSEVEGTDVDDASAVFESQNGAGWIVQLDFNGK 304

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP------SGKAQISGNFTIETAGIL 331
           G+++F + T +   K         VL   V++           G+A ISG FT +++  L
Sbjct: 305 GSKKFAKTTGELTTKQSPQNRFAIVLDGEVVSDPEVTQGAITGGRATISGGFTQQSSEDL 364

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A +L  G+LP+  +I +E  V A LG + +  G  A   GL L+V++++V Y    LVA 
Sbjct: 365 ANVLSYGALPLSFDIADETTVSAALGGEQLDAGLVAGAIGLALVVIYLVVYYRGLALVAM 424

Query: 392 FSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            S+ ++ ILT  ++ LLG      L LP++ G ++ IG+  DS I+  ERIR+E R+ +S
Sbjct: 425 ASLGVSAILTYTIMVLLGPGIGFALNLPAVCGAIVAIGITADSFIVYFERIRDEIREGRS 484

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           +  +++ G+ RA  TI  S+  + +A  VL+    G V+GFA T+GL+ L+ +       
Sbjct: 485 LRPAVERGWPRARRTILVSDFVSFLAAAVLYVVTVGKVQGFAFTLGLTTLLDVAVVFLFT 544

Query: 508 RAMMIFIIRYKKM 520
           + +M  + R    
Sbjct: 545 KPLMTILARRPFF 557



 Score =  109 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 86/264 (32%), Gaps = 8/264 (3%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +    + KG  +              ++    +  G++       +           G
Sbjct: 295 WIVQLDFNGKGSKKFAKTTGELTTKQSPQNRFAIVLDGEVVSDPEVTQGAITGGRATISG 354

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               Q+            +     I +   V   +  E +  G+V   I    ++IY+ +
Sbjct: 355 GFTQQSSEDLANVLSYGALPLSFDIADETTVSAALGGEQLDAGLVAGAIGLALVVIYLVV 414

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            ++   AL A+ +L +    T     L G       NL AV   +  IG + +  +V ++
Sbjct: 415 YYR-GLALVAMASLGVSAILTYTIMVLLGPGIGFALNLPAVCGAIVAIGITADSFIVYFE 473

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R  ++      S R  +++         + +   +F++   + V     +  FA  + 
Sbjct: 474 RIRDEIRE---GRSLRPAVERGWPRARRTILVSDFVSFLAAAVLYVVTVGKVQGFAFTLG 530

Query: 803 FGIVVAASSSIFIAAPILLFIYDW 826
              ++  +       P++  +   
Sbjct: 531 LTTLLDVAVVFLFTKPLMTILARR 554


>gi|290475731|ref|YP_003468620.1| multidrug transport protein, outer membrane (RND family)
           [Xenorhabdus bovienii SS-2004]
 gi|289175053|emb|CBJ81856.1| multidrug transport protein, outer membrane (RND family)
           [Xenorhabdus bovienii SS-2004]
          Length = 1027

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/631 (12%), Positives = 161/631 (25%), Gaps = 40/631 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I   G L  +   +       +P                     +   
Sbjct: 9   QRPVATTLLSLAITLCGALSFILLPVSPLPKMDYPFIS--------------VSAYMPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +       ITL F  SR     A  V   +  
Sbjct: 55  SPETMASSVATPLERSLGKIAGVKEMSSNSSLGNTNITLEFELSRDINGAARDVQAAINA 114

Query: 122 VNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             S L      +         +  I++             +           ++   E  
Sbjct: 115 AESLLPSGMPSRPRYYKANLSDSPIMILTLTSTN--HSVGQLYDIASTYLAQKLSQVEGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                    L  +  E +P+ L     +   +S      N  +                 
Sbjct: 173 SNVSVGGGSLPAVRIELNPNALFNQGVSLNDVSQAINSANAQRPTGHVD----------- 221

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    S         N + K       I                NI   +      
Sbjct: 222 ---------SAQQNWQVHTNDELKNADSYRSIIVHYRNGSPVRLQDVANIKDSVENTRVA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +         +   ++  +   TI+       +LR          + +        S  
Sbjct: 273 GMSGGEPAIVLVIRRESGANIIATIDRIRAELPVLRESIPANIQFNIAQERSPTIRASLQ 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K + AI   LV++V+F+ +  G+  L+   ++ +++I T   + L G +L   S+  +
Sbjct: 333 EVKQSLAIAVALVILVVFLFLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I+V E I            +   G      T+   +++ +   + L   
Sbjct: 393 TIATGFVVDDAIVVLENISRHLEAGLKPAQAALKGVREVGFTVLAMSVSLVAVFIPLVLI 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R FA+T+  +I IS+  ++++   M   +++    KS          L+   
Sbjct: 453 DELLGRMFRDFAVTLATAIGISLLISLTLTPMMCAHLLKSSPQKSQKRIRGFSKVLLKIQ 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                           +L ++  I +L               Q        V      S 
Sbjct: 513 QGYGRSLKWVLNHTRWVLLTLIGIVVLNVWLYINIPKTLFPQQDTGRILGFVIADENSSF 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                      Q  + +        +    S
Sbjct: 573 QSMRDKMKHFMQVINADPTVENVEGFTESSS 603



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 74/204 (36%), Gaps = 8/204 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIIS 676
           ++R +          R+   +      I         +   P I   L   K  + + ++
Sbjct: 284 VIRRESGANIIATIDRIRAELPVLRESIPANIQFNIAQERSPTIRASLQEVKQSLAIAVA 343

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + +++++++R      L     + + +  T     L G   N  ++ A+    G+ V+D
Sbjct: 344 LVILVVFLFLR-SGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +     +       K + E     +  S++     +P+ +     G +
Sbjct: 403 AIVVLENI---SRHLEAGLKPAQAALKGVREVGFTVLAMSVSLVAVFIPLVLIDELLGRM 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
              FA+ +A  I ++   S+ +  
Sbjct: 460 FRDFAVTLATAIGISLLISLTLTP 483



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 92/214 (42%), Gaps = 6/214 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   ++   +  +  +++ +TE+   S ++++     +  ++     +  ++ + + 
Sbjct: 801  TIAFNVAENYTLSDAISAIERTMTELSVPSAVRSSFAGIAQDFQKTQSSQLWVILAAIVT 860

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + + + ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 861  VYLVLGVLYESYIHPLTILSTLPSAGVGALLALELFNTPFSLIAMVGIMLLIGIVKKNAI 920

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +     +  +S ++ I ++        + T+++A    LP+ +    G  +  
Sbjct: 921  IMVDFALE--AQKSGKLSAQEAILQASLLRFRPIMMTTLSALFGALPLVLNSGDGAELRQ 978

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               I +  G+V++   +++    + LF    R K
Sbjct: 979  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRKK 1012


>gi|290961824|ref|YP_003493006.1| protein-export membrane protein [Streptomyces scabiei 87.22]
 gi|260651350|emb|CBG74472.1| protein-export membrane protein [Streptomyces scabiei 87.22]
          Length = 591

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 110/553 (19%), Positives = 213/553 (38%), Gaps = 54/553 (9%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DE 62
             +IL +++   G + A  +  P+                LG+DL GG+ + LE     E
Sbjct: 20  LALILIALVALTGGMFASGHTTPR----------------LGIDLAGGTSITLEARSGQE 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
                  +    + +   +   G+    ++   ++ I ++       +   D+V    + 
Sbjct: 64  SAINKTNMDTAVEIMNRRVNGLGVSEAEVQTQGDRNIIVNIPKGTNSKEARDQVGTTAKL 123

Query: 122 VNSKL-----------------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
               L                 +              +     +        + A  Q  
Sbjct: 124 YFRPLLRTDSGTPTPSPTPSKSSSGSASPSSSGDKAADEPDKATSPGSSSPTATATSQGR 183

Query: 165 EIIRQRID-------QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            +               G ++++     +         ++    L             + 
Sbjct: 184 AVTDALKADPTPSSSASGSAKASESAKATGGASPSPTPDKATQALIDRYNALDCSDPKQR 243

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-ATANFDPKTHKPVVDISFDE 276
                 K     +   +D+      V   V + G  +                V + F++
Sbjct: 244 AGLGKGKTTDTIIACGQDNGAWSKFVLGPVGVDGTDVTKAQAVLDTQNGGGWKVVMDFND 303

Query: 277 MGARRFFEVTRD-----NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
            G ++F EVT+      +     A+VLD  V++ P +  AI  GKA+ISG+FT + A  L
Sbjct: 304 AGGKKFTEVTKALAAQTSPMNQFAIVLDDDVVSHPQVTSAITGGKAEISGSFTQQEAESL 363

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           + ML  G+LP+         V   LG + ++ G  A   GL L+++++IV Y    L+A 
Sbjct: 364 SNMLSYGALPLTFKTASVTTVSPALGGEQLHAGLIAGAIGLALVMIYLIVYYRGLSLIAI 423

Query: 392 FSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
            S+ ++  LT  L++LLG      L LP++ G ++ IG+  DS I+  ER+R+E R+ ++
Sbjct: 424 ASLLISAALTYVLMALLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIREGRT 483

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
           +  +++  + RA  TI  S+  + ++  VLF    G V+GFA T+GL+ ++ +       
Sbjct: 484 LRPAVERAWPRARRTILVSDFVSFLSAAVLFVVTVGKVQGFAFTLGLTTVLDVVVVFFFT 543

Query: 508 RAMMIFIIRYKKM 520
           + ++  + R K  
Sbjct: 544 KPLLTLLARTKFF 556



 Score = 98.2 bits (242), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 84/239 (35%), Gaps = 9/239 (3%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +    +  GG +   +       +   +    +   D+             + +    
Sbjct: 295 WKVVMDFNDAGGKKFTEVTKALAAQTSPMNQFAIVLDDDVVSHPQVTSAITGGKAEISGS 354

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            +  +   L  +      +       +   V P +  E +  G++   I    ++IY+ +
Sbjct: 355 FTQQEAESLSNMLS-YGALPLTFKTASVTTVSPALGGEQLHAGLIAGAIGLALVMIYLIV 413

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            ++   +L AI +L++    T    AL G       NL AV   +  IG + +  +V ++
Sbjct: 414 YYR-GLSLIAIASLLISAALTYVLMALLGPAIGFALNLPAVCGAIVAIGITADSFIVYFE 472

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           R+R  ++      + R  ++++        + +   +F+S   + V     +  FA  +
Sbjct: 473 RVRDEIRE---GRTLRPAVERAWPRARRTILVSDFVSFLSAAVLFVVTVGKVQGFAFTL 528


>gi|299768874|ref|YP_003730900.1| nodulation protein precursor [Acinetobacter sp. DR1]
 gi|298698962|gb|ADI89527.1| nodulation protein precursor [Acinetobacter sp. DR1]
          Length = 1032

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 59/629 (9%), Positives = 161/629 (25%), Gaps = 48/629 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP+      +                 
Sbjct: 9   KYPVFTIMMMISLMVLGLAS-----WKRMTVEEFPNVDFPFVV---------VTTQYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +  + I   F         A  V   +  
Sbjct: 55  SPEAVESDITKKLEDQINTISGIKQITSRSSEGFSMIVAEFNLDTSSALAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   +    ++         I+              + S  + ++ + Q+       
Sbjct: 115 VTAQFRDEIDTPIVQRYDPSSSPIMSVVFESSS--MSLAQLSSYVDKRIVPQLKTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  +  P +L+       ++       N          +        Q 
Sbjct: 173 NVNLLGDAKRQIRIKILPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                           D+      +   F      I    A +    
Sbjct: 233 KV--------------------IHPLAFGDLVIANKNSSPIFLKQVATIEDTQAELQSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    ++        L+          V   +      S   
Sbjct: 273 FYNGRTAVSVDILKSSDANVIQVVDKTYQTLEKLKTQMPAGLNYKVVADSSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VTRTIIEGAALAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHTELGKDHVTAALEGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G     F +T+  ++LISMF + ++   +                +    I      
Sbjct: 453 GLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKKDNWLQRFFNHISNVLDR 512

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              +    + +         +   +                     KG +++        
Sbjct: 513 LTHVYEKLLKLALRFRFITVIIAIVSLFAALGLSKLIGTEFVPTPDKGEVRIQFETPVDA 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            L   ++ L  +      F +       +
Sbjct: 573 SLEYTQAKLHQVDKIIRQFPDVVSTYGVV 601



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 77/218 (35%), Gaps = 8/218 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +             +  + ++K  T++      +        I   +       +  +
Sbjct: 282 VDILKSSDANVIQVVDKTYQTLEKLKTQMPAGLNYKVVADSSKGIRASIKDVTRTIIEGA 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           A+A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG  ++D
Sbjct: 342 ALAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDD 401

Query: 737 KVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+  +T           +   E     + T++      LP+A  GG +  
Sbjct: 402 AIVV----RENIVRHTELGKDHVTAALEGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGR 457

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F + ++  ++++   S  +   +     D   K 
Sbjct: 458 FFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKK 495



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +S + + I +  +F  +      +T+L L +        LF    NL ++  ++
Sbjct: 861  ALTAITLSIVFIYIVLGSQFNSFIHPAAIMTSLPLSLIGVFLALFLFKSTLNLFSIIGII 920

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K      S  D I ++    L   + T+ A  + ++P+A
Sbjct: 921  MLMGLVTKNAILLIDFIK---KAMDQGTSRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 977

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 978  LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 1020


>gi|308187497|ref|YP_003931628.1| transport protein yegN [Pantoea vagans C9-1]
 gi|308058007|gb|ADO10179.1| Putative transport protein yegN [Pantoea vagans C9-1]
          Length = 1040

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/679 (10%), Positives = 183/679 (26%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGIL-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVVTLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPNDLPNPPVYSKVNPADPPIMT-LAVTTRSMPLTQVQDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  T+  +       N +                    
Sbjct: 184 VTLSGGQRPAVRVKMNAQALAALGLTSETVRTAISNANVNSAKGSLDGPT---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V +S      +  ++          +                 I +       G  
Sbjct: 234 --RSVTLSANDQMKSAEDYRQ--------LIISYKNGAPVRLGDVATIEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    +   L A         +          S +  
Sbjct: 284 ANRDAAIVLNVQRQPGANIIATADNIRAMLPALTAALPKSVDVKLLTDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      L+   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELMLAMALVVMIIYLFLRNVPATLIPAVAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   +       K+ +    +      ++ 
Sbjct: 464 VIGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSAESLRKQNRFSRASEAMFDRIVA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL---GVLANRPVDLS 592
                         + +S+      + LL    +  G   +    +    + A + V  +
Sbjct: 524 TYGRGLSRVLNHPWLTLSVALGTLVLTLLLWMVIPKGFFPQQDNSIIQGTLQAPQSVSYA 583

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +      +    +     +   +F+         + A+ ++      +  + +P    +
Sbjct: 584 SMAQRTRDVASIIMKDPAVESMTSFVGVDGTNASLNSARLQINLKPLDQRDDRIPAIQQR 643

Query: 653 NTEIVGPKISRELIRKGIV 671
             + V      +L  + + 
Sbjct: 644 LQQQVSAVPGVQLWLQAVQ 662



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 347 LMLAMALVVMIIYLFLR-NVPATLIPAVAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DVIGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|190575639|ref|YP_001973484.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
 gi|190013561|emb|CAQ47196.1| putative transmembrane protein [Stenotrophomonas maltophilia K279a]
          Length = 1041

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/460 (11%), Positives = 120/460 (26%), Gaps = 30/460 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  L   P+  P               +         +   +    ++  + ++    
Sbjct: 29  FTRLTLRELPAIDPPIV---------SVSVDYTGASAAVIESRITQVLEDALAGIEGIDT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                   ++++++ F  +R  E  A+ V   +  V  ++  + +   +         I+
Sbjct: 80  INARSTNGRSQVSIEFTSNRDIEAAANDVRDAVSRVADRMPEEARPPEIAKVESDADPII 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                        +E S    R  +D+    +   Q     R    +    D  +L    
Sbjct: 140 WFNMVSS--TMDTLELSDYADRYVVDRFSSLDGVAQVRIGGRQRYAMRIWLDRDQLAARG 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            TT  +                          N  L   ++E +             K  
Sbjct: 198 LTTGDVETALRNE-------------------NVELPAGRIESTDRDFTLRVERNYIKPE 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                                  I    A                     +  +      
Sbjct: 239 DFATIPLGKGRDGYVVRMGDVAKIELASAERRAYYRSNGEPGIGLGIVKTSTANSLDVAR 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
           TA   A  +           V   N      +      T      LVL V+++ +   + 
Sbjct: 299 TARAEAERVAMTLPKGTQIFVAFDNTTFIEAAVDRVYATLVEAMILVLAVIWLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ + ++     L     ++ L ++  +VL IGL VD  I+V E ++      +
Sbjct: 359 ALIPAVTVPVCLVAAFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENVQRRIDLGE 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
               +   G ++    +  +    +   + + F  G   R
Sbjct: 419 PPLVASKRGTTQVAFAVIATTAVLVAVFLPVGFLEGNTGR 458



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    + G   NL +   ++ 
Sbjct: 859  LLTFAMALLVVYLVLAAQFESFIHPLTIMLTVPLGVLGALVGLWVSGGTVNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     + R+ I +S    L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDDGRTVREAIIESAMVRLRPILMTSIATVVGAIPLVV 975

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFI 823
             GG    S     I + FG+ ++   S+F+       +
Sbjct: 976  AGGPGSASRGTIGIVIIFGVTLSTFLSLFVVPAFYARL 1013



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 67/210 (31%), Gaps = 4/210 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V     +       +++       L  ++    +S+   R      +++   +P 
Sbjct: 254 VRMGDVAKIELASAERRAYYRSNGEPGIGLGIVKTSTANSLDVARTARAEAERVAMTLPK 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
            T               + +    ++ + I +L  IW+    +  AL    T+ + +   
Sbjct: 314 GTQIFVAFDNTTFIEAAVDRVYATLVEAMILVLAVIWLFLGSFRAALIPAVTVPVCLVAA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 F    NL  + A++  IG  V+D +VV + +    +             +   +
Sbjct: 374 FIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENV---QRRIDLGEPPLVASKRGTTQ 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                + T+       LP+    G+    F
Sbjct: 431 VAFAVIATTAVLVAVFLPVGFLEGNTGRLF 460


>gi|170723551|ref|YP_001751239.1| acriflavin resistance protein [Pseudomonas putida W619]
 gi|169761554|gb|ACA74870.1| acriflavin resistance protein [Pseudomonas putida W619]
          Length = 1030

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/581 (12%), Positives = 155/581 (26%), Gaps = 37/581 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPVAPLPEADFPT-----------IQVTAQLPGASPETMASSVATPMEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       + L F   +  +  A +V   +    ++L  D              S
Sbjct: 82  TQMTSSSALGSTTLILQFTLDKNIDTAAQEVQAAINTATARLPQDLPNPPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL    +        + S         Q+   E       + ++   +  +  P +L  
Sbjct: 142 PVLV-LTVSSAQMPGNDLSDYAETLLARQLSQIEGVGLINITGQLRPAIRVQAQPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           +  T A +                              +          ++   AN    
Sbjct: 201 MGLTLADLRLAI--------------------QQTSLNLAKGALYGEHSVSTIAANDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                     +   +   +   T
Sbjct: 241 HPEDYARLIVSYRDGAPVHLQDVAKVINGAENAYVKAWSGNQPGLNLVVFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V +        S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRVLGALPKLQEMLPASVEVSVLQDRTQTIRASLHEVELTLMIAVALVIGVMALFLRQW 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              LV    + +++I T AL+ + G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLVVSSVLGVSLIATCALMYVFGFSLNNLTLVAIVIAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            +    +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GEDSRTAALKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            ++++   +    +R    +                +       R       +  ++  I
Sbjct: 481 VSLTLAPTLCALFMRRPPTEHHGGFGERLLKWYEKGLDRALAHQRLTLGVFGLTLALAVI 540

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
             +      + +   G I     A   V    +     +L 
Sbjct: 541 GYVAIPKGFFPLQDTGFILGTTEAAADVSYPSMIDKHLALA 581



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 90/250 (36%), Gaps = 7/250 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V   +   +   +   + +     LV  +    + V     +     
Sbjct: 250 VSYRDGAPVHLQDVAKVINGAENAYVKAWSGNQPGLNLVVFRQPGANIVDTVDRVLGALP 309

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
           K+ E++P S   +      +  R  + +  + ++I+   ++  + +  + W   L   + 
Sbjct: 310 KLQEMLPASVEVSVLQDRTQTIRASLHEVELTLMIAVALVIGVMALFLRQWSATLVVSSV 369

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L + +  T     +FG   N   + A++  +G+ V+D +VV + +    +        R 
Sbjct: 370 LGVSLIATCALMYVFGFSLNNLTLVAIVIAVGFVVDDAIVVVENIH---RHLEAGEDSRT 426

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +A
Sbjct: 427 AALKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTLA 486

Query: 817 APILLFIYDW 826
             +       
Sbjct: 487 PTLCALFMRR 496



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 78/203 (38%), Gaps = 6/203 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + ++++   E+    +I        +  +  +      ++ + +A+ I + + ++   
Sbjct: 820  DAVAILERTQRELGMPDSISGNFQGAAQAFQSSLSSQPWLILAALVAVYIILGVLYESLV 879

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L      G +F++  +  V+ LIG    + +++ D   +     
Sbjct: 880  HPLTIISTLPSAGLGALLLLWAMGQDFSIMGLIGVVLLIGIVKKNGILLIDFALE--AQR 937

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               ++    I ++        + T+MAA +  +P+      G  +     I +  G++V+
Sbjct: 938  RHGLTPEQAIHQACLTRFRPIIMTTMAALLGAVPLMFGFGAGAELRQPLGIAVVGGLLVS 997

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
             + ++F    I L +     +  
Sbjct: 998  QALTLFTTPVIYLALERLFHRRK 1020


>gi|134300785|ref|YP_001114281.1| acriflavin resistance protein [Desulfotomaculum reducens MI-1]
 gi|134053485|gb|ABO51456.1| acriflavin resistance protein [Desulfotomaculum reducens MI-1]
          Length = 1038

 Score =  160 bits (403), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/551 (11%), Positives = 169/551 (30%), Gaps = 53/551 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   +  +    +  +G++  +   +  +    FP                  ++ + V
Sbjct: 8   LKRPVFATVTILALLAVGMISYIGLNINDNPEVEFP------------------YVAVTV 49

Query: 61  DEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
            +       ++       +E    +        + R+    +   F      E  A  V 
Sbjct: 50  VQPGVSPEQIESKIIYKLEEAIGQIAGVKHIYANAREGYALVFAEFTLETPPEVAAQDVR 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  +   L  D ++ ++         I+      D  +        ++I++RI+   +
Sbjct: 110 DKIGTIRGDLPQDIEEPIIARFDPMAYPIISLAVTGDISMREMTALVEDLIKRRIE---V 166

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +          +  ++    D  +L     +TA++  +    N    G     +     
Sbjct: 167 VKGVGSIELYGDVKREIHINLDKDKLAAYGLSTAEVVNNLRSENMEMPGGKVSSQ----- 221

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                    +    +   ++        + +      +   +  
Sbjct: 222 ---------------DREITLRTMGNVNKVEEFANLPVARRDGVQLYVKDVATVVDGVEE 266

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                              ++  +     +   ++   ++    P     +   N     
Sbjct: 267 QDSIAHYQGKQAIGLDILKQSGANTVEVADKLKVVVEEVKKELPPGVKLEIVRDNSAYIR 326

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            + +  + T    + L ++ +F+ +   +  L+A  +I  ++I T   + LLG TL   S
Sbjct: 327 DAVNDVRNTLMEGSLLAVLTVFIFLRDWRSTLIAALAIPSSIIATFFAMKLLGFTLNFMS 386

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  + L +GL +D  I+V E I    R  +    +   G +     +  + +T +   + 
Sbjct: 387 LMALSLSVGLLIDDAIVVIENIVRHLRMGKPALEAARDGTTELGLAVTSTTLTVVAVFLP 446

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +       G   + F +T+  S+L+S+F A ++V  +       + +++ +      F  
Sbjct: 447 VGMMTGIVGQFFKQFGLTVVFSVLVSLFVAFTLVPML-----SSRYLRTEEYVLKGFFGR 501

Query: 534 IPDCIAIQFMR 544
             +     F R
Sbjct: 502 FINWFNRGFDR 512



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 78/240 (32%), Gaps = 12/240 (5%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ V   +E                + L +      +   + +V+    KK        
Sbjct: 256 DVATVVDGVEEQDSIAHYQGKQAIGLDILKQSGANTVEVADKLKVVVEEVKKELPPGVKL 315

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I        + +   +R  +  +  S +A+L        W   L A   +   I  T  
Sbjct: 316 EIVRDNSAYIRDAVNDVRNTL--MEGSLLAVLTVFIFLRDWRSTLIAALAIPSSIIATFF 373

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G   N  ++ A+   +G  ++D +VV + +   ++         +       E  
Sbjct: 374 AMKLLGFTLNFMSLMALSLSVGLLIDDAIVVIENI---VRHLRMGKPALEAARDGTTELG 430

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                T++      LP+ +     G     F + + F ++V    S+F+A  ++  +   
Sbjct: 431 LAVTSTTLTVVAVFLPVGMMTGIVGQFFKQFGLTVVFSVLV----SLFVAFTLVPMLSSR 486



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 91/267 (34%), Gaps = 7/267 (2%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            H      D        V +     L V  S L          Q    ++   + L     
Sbjct: 749  HQRRNLADLNNLYLPSVHSPEGEQLMVPLSQLTETVFSTAPSQINRFDRIKEITLTCNLD 808

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                        ++   EI      +  E    ++  +     I+ +I + + +   +  
Sbjct: 809  GVSLGEFNQAFKERVNQEIKLPPGYRFYEGGDAEMMGDTFVAMILALITAVLFIFFILAA 868

Query: 687  RFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +F+ Y      + +L + I   +    + G + +L ++  ++ L+G    + +++ D  +
Sbjct: 869  QFESYIDPFSIMLSLPMAIVGAILGLLIVGSDLSLMSMIGIIMLMGLVTKNAILLIDFTK 928

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
               +     +   + +  +    L   + TS A  + ++P+A+    G       A  + 
Sbjct: 929  ---QQRARGVERNEALRIAALTRLRPIIMTSTAMILGMMPLALALGPGAEGRAPMAHAII 985

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++ +   ++ +   I   + D++ K
Sbjct: 986  GGLITSTLLTLVVVPVIYSILDDFKKK 1012



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 58/521 (11%), Positives = 150/521 (28%), Gaps = 37/521 (7%)

Query: 3    NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
             N    I  +++  +G L+ +P          F  A     + L  D+  G         
Sbjct: 526  RNRKKTIGIAVLLFVGSLMIIPLLGST-----FIPASDVGELYLVADMDAGLS------- 573

Query: 63   DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 G +    +E      +      ++      I +   D   ++   +++   ++  
Sbjct: 574  -TEAAGAITQKIEEKLRQYSEVTKVYSTIEADSANIFVKLVDKHDRDQTINELAATMRRQ 632

Query: 123  NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             + +       + +          + Q  +       ++   E   + ++ I  S     
Sbjct: 633  LNTIPGVK---VTINQQGGTGQGAMVQFRLQGENLDQLQIYAEQAMRIMENIPGSVDVAS 689

Query: 183  RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +   Q+  +QD      L  +TAK+        N      F     R     +  
Sbjct: 690  SYKPGKPEGQIFIKQDV--AADLGVSTAKVGDTLRTLFNGVVVSQFEDGEDRLDVRVRLS 747

Query: 243  VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +  ++ ++     +   P+  + +V +S              +   +          
Sbjct: 748  EHQRRNLADLNNLYLPSVHSPEGEQLMVPLSQLTETVFSTAPSQINRFDR---------- 797

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                 I +   +             A            P                  ++ 
Sbjct: 798  -----IKEITLTCNLDGVSLGEFNQAFKERVNQEIKLPPGYRFYEGGDAEMMGDTFVAMI 852

Query: 363  KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                  V  +  I+      Y     +   S+ + ++  +  L ++G+ L+L S+ GI++
Sbjct: 853  LALITAVLFIFFILAAQFESYIDPFSIML-SLPMAIVGAILGLLIVGSDLSLMSMIGIIM 911

Query: 423  GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL---FF 479
             +GL   + IL+ +  +++  +      +L +        I  ++   ++  + L     
Sbjct: 912  LMGLVTKNAILLIDFTKQQRARGVERNEALRIAALTRLRPIIMTSTAMILGMMPLALALG 971

Query: 480  FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             G       A  +   ++ S    + +V  +   +  +KK 
Sbjct: 972  PGAEGRAPMAHAIIGGLITSTLLTLVVVPVIYSILDDFKKK 1012


>gi|171910134|ref|ZP_02925604.1| AcrB/AcrD/AcrF family protein [Verrucomicrobium spinosum DSM 4136]
          Length = 1064

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/572 (11%), Positives = 153/572 (26%), Gaps = 33/572 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +   +G +           +  +P  +P   +                 
Sbjct: 9   KRPIFAGVLSIITLLVGAIALW-----LLPVSEYPEVVPPTVVVTA---------RYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++F      +     V   + 
Sbjct: 55  NPKTIAETVSTPLEQSINGVENSIYMFSQATTDGVMTLTVTFKLGTDPDKAQVMVQNRVD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               KL  + ++  + T        +L            +        Q  D +      
Sbjct: 115 QAEPKLPEEVRRIGVTTVKSSPDMTLLVHLFSPDNRYDEVFVRNYATLQVRDVLARLPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +    DP+++     T + +       N        G +    +  N+
Sbjct: 175 GQVQLFGSGDYAMRVWLDPNKVAARGMTASDVVAAIREQNVQVAAGSVGQQPNPHAGDNE 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L+  K  +                 +    +        R        +    +     
Sbjct: 235 LLINTKGRLVTEE-------------EFGDIVVKIGARGERVLLKDIARMELGASEYALR 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L                +            A L+                     S  
Sbjct: 282 SLLNNKAAVAIPVFQLPGANSIAVSNAVREKMAELKKTFPDGLEYAFAYDPTVFVRHSIE 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A++S LG ++   S+ G+
Sbjct: 342 AVVHTLVEAVILVVLVVILFLQTWRASIIPLAAVPVSLVGTFAIMSALGFSINALSLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        +   +     S     I  + +      +   F 
Sbjct: 402 VLAIGIVVDDAIVVVENVERNIALGFTPVEATKRAMSEVTGPIVATALVLSAVFIPTAFI 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
               G   + FAIT+ +S +IS F ++++  A+   +    +     +       F    
Sbjct: 462 TGLSGQFYKQFAITIAISTVISAFNSLTLSPALSALLLKDHHAPKDKLSKAMDWAFGWFF 521

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                 F  A              S   +  +
Sbjct: 522 RPFNRFFDWASQKYSNGVARIIRVSAIAIIVY 553



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 72/228 (31%), Gaps = 17/228 (7%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              +              +   E + +K+        +                 G++   
Sbjct: 827  NGYPAAEISGMPGPGFSSGQAEAIMEKLAAETLPKGLALDWTELTYQKILAGNTGMLVFP 886

Query: 675  ISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            IS + + + +      F+  FA+  I  + L     +        + N+     ++ LIG
Sbjct: 887  ISIVLVFLVLAAQYESFRLPFAVLLIVPMAL--LSAMAGVWFTKGDNNIFTQIGLIVLIG 944

Query: 732  YSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +  + +++ +   ++R+            +   ++    L   + TS+A    V P+ V
Sbjct: 945  LAAKNAILIVEFAVKLREE------GKGIVEAALEASRLRLRPILMTSIAFIAGVFPLVV 998

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G  +  +  + +  G++      +F+     + +     K   +
Sbjct: 999  ATGAGAEMRHAMGVAVFAGMIGVTVFGLFLTPIFYVVLEKLGVKKPAV 1046



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 83/228 (36%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L +     I      G  +  V    +   +  +    + ++        +
Sbjct: 275 ASEYALRSLLNNKAAVAIPVFQLPGANSIAVSNAVREKMAELKKTFPDGLEYAFAYDPTV 334

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + E V   +   +I   +V ++               W  ++  +  + + +  T 
Sbjct: 335 FVRHSIEAVVHTLVEAVILVVLVVILFLQT-----------WRASIIPLAAVPVSLVGTF 383

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              +  G   N  ++  ++  IG  V+D +VV + + +N+ L     +  +   ++++E 
Sbjct: 384 AIMSALGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIAL---GFTPVEATKRAMSEV 440

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            G  V T++      +P A      G     FAI +A   V++A +S+
Sbjct: 441 TGPIVATALVLSAVFIPTAFITGLSGQFYKQFAITIAISTVISAFNSL 488



 Score = 39.3 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 46/531 (8%), Positives = 129/531 (24%), Gaps = 55/531 (10%)

Query: 11   YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             ++I   GLL+   N   +      P+   +  I+    L  G+ +       +  +  +
Sbjct: 548  IAIIVYGGLLVLTANLFQKVPAGFVPAQDKQYLIAFA-QLPEGASI-------ERTDKII 599

Query: 71   QMYSDELRS--------FLKKEGIGVFSMRQIQNKITLSFA-------DSRFKENIADKV 115
            +  ++                  I  F+          +                IA ++
Sbjct: 600  RRMTEIAMKHEGVSDSVAFPGLSINGFTNSPNSGIAFTTLKSFEERKGPGMSGAEIAAQL 659

Query: 116  TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                  +            +               +   +    +  + + +  + +Q  
Sbjct: 660  NKEFGEIQEAFIAIFTPPPVN-GLGTTGGFKFYVEDRAGLGYDELYNATQALIAKANQTP 718

Query: 176  ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                       +   +Q     D ++ +Q     A +     +   S            +
Sbjct: 719  GLAGLFTSFTINNPQLQAD--VDRAKAKQQGVPLANIFETMQINLGSL------YVNDFN 770

Query: 236  SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
              G  Y V  + +            F       +   + +  G                 
Sbjct: 771  RFGRTYQVVAQADAE----------FRTNADDILRLKTRNAKGEMVPLGSLVTVTETYGP 820

Query: 296  VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                            +P           I        + +  +L       ++      
Sbjct: 821  DRAMRYNGYPAAEISGMPGPGFSSGQAEAIMEKLAAETLPKGLALDWTELTYQK------ 874

Query: 356  LGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGATLT 413
                +   G       +VL+ L +   Y   +        + + ++  +A +        
Sbjct: 875  --ILAGNTGMLVFPISIVLVFLVLAAQYESFRLPFAVLLIVPMALLSAMAGVWFTKGDNN 932

Query: 414  LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            + +  G+++ IGLA  + IL+ E   +   + + +  +           I  ++I  +  
Sbjct: 933  IFTQIGLIVLIGLAAKNAILIVEFAVKLREEGKGIVEAALEASRLRLRPILMTSIAFIAG 992

Query: 474  TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
               L      G        + +   ++      + +     + + +    K
Sbjct: 993  VFPLVVATGAGAEMRHAMGVAVFAGMIGVTVFGLFLTPIFYVVLEKLGVKK 1043


>gi|154245543|ref|YP_001416501.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
 gi|154159628|gb|ABS66844.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
          Length = 1044

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/598 (10%), Positives = 166/598 (27%), Gaps = 43/598 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + +  +G +           +   P                     L    
Sbjct: 10  RPIATTLLMAALVLVGAVA-----YAMLPVAPLPQVDFPTIQ---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +   S +        +       IT+ F  +R  +  A  V   +   
Sbjct: 56  PETMASSVSTPLERQFSQISGVTQMTSTSALGVTSITVQFDLNRNIDAAAQDVQSAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  +              + +L   ++   +    +           QI       Q
Sbjct: 116 AGQLPKNLPSPPTFRKVNPADAPILI-LSVQSDLYPLTKLDDAADTILAQQISQIAGIAQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + DPS++  L  +   +          +    F       +      
Sbjct: 175 VAITGEQKPAVRVQVDPSKIAALGMSLEDVRAVLAAATVDQPKGSFDGAAQGFTIYADDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                        P  ++                              
Sbjct: 235 LLAAT--------------------PWNEVVVAYRNGAPVRIRDIGRAVDGPENARLASW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                  Q I   +   +   T++    +   L A   P     +          S    
Sbjct: 275 QNGKRGIQLIVFKQPGANVIETVDRVRAMIPRLEAALPPGINVEIIADRTQTIRASVEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +   LV+ V+F  +      ++   ++ + +I T A++ +LG ++   S+ G+ +
Sbjct: 335 QFTMLLTIALVVGVIFAFLRNLWATVIPSVTVPMALIGTFAVMYVLGYSIDNLSLMGLTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G  VD  I++ E +     +    F +   G      TI   +++ +   + +   G 
Sbjct: 395 AVGFVVDDAIVMLENVYRHIEEGLPPFQAALKGAGEIGFTIISISLSLVAVFIPVLMMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G  +R FA+T+ ++IL+S+  ++++   M    ++           ++        + 
Sbjct: 455 IVGRLLREFAVTVTITILVSVVVSLTLTPMMCALFLKNDHGAKHGRAYMAAEAFFDGMLK 514

Query: 540 IQFMRARFW-----GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +     ++         +S+  ++ +   L+          +    +   +    D+S
Sbjct: 515 VYDTGLKWVLKHQFATLMSLFVTMAATGYLYVVIPKGFFPQQDTGFIQGFSEAGQDIS 572



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/278 (11%), Positives = 90/278 (32%), Gaps = 11/278 (3%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
              FT   +  +         V+A R      +R    ++   + +           ++L
Sbjct: 224 AQGFTIYADDQLLAATPWNEVVVAYRNGAPVRIRDIGRAVDGPENARLASWQNGKRGIQL 283

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK----GIVGVIISA 677
                        ++ V+  I  +           +    ++ +           ++  A
Sbjct: 284 IVFKQPGANVIETVDRVRAMIPRLEAALPPGINVEIIADRTQTIRASVEDVQFTMLLTIA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + + +        +  +    T+ + +  T     + G   +  ++  +   +G+ V+D 
Sbjct: 344 LVVGVIFAFLRNLWATVIPSVTVPMALIGTFAVMYVLGYSIDNLSLMGLTIAVGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +V+ + +    +     +       K   E     +  S++     +P+ + GG V   +
Sbjct: 404 IVMLENV---YRHIEEGLPPFQAALKGAGEIGFTIISISLSLVAVFIPVLMMGGIVGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             FA+ +   I+V+   S+    P++  ++      A+
Sbjct: 461 REFAVTVTITILVSVVVSL-TLTPMMCALFLKNDHGAK 497


>gi|167836106|ref|ZP_02462989.1| multidrug resistance protein MdtC [Burkholderia thailandensis
           MSMB43]
          Length = 1100

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/583 (12%), Positives = 160/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL   +   +       FP+ +                  L    
Sbjct: 10  RPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTIL--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVAEMTSMSSVGNARIVLQFNLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMV-VSLTSKTASPAKLYDAASTVLQQSLSQVDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSLSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  SG H      N          D+                ++   +  + +  +
Sbjct: 217 --KGAIESGPHHYQLYTNDQASKASQYKDLVIAYRNGAAVSLSDVSSVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        I       +   TIE        L A                    S +  
Sbjct: 275 MNGERAVLVILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG +L   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSLNNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++        +           + + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLVVSLTLTPMMCARLLPEAHDPRDEGRVARWLERGFERMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +   +   +  +  +  +   Y +  KG     
Sbjct: 515 RGYERTLSWALRHPLTILMTLVATIALNIALYIVVPKGFFPQQ 557



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +S + M++++++R  W   L     + + I  T G   L G   N  ++ A++   G+
Sbjct: 340 IAVSLVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSLNNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+   S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLVVSLTLTP 483



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/215 (17%), Positives = 92/215 (42%), Gaps = 7/215 (3%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + E+    TIQ +     +  +E ++   + ++ +
Sbjct: 869  VATTISFNLPPGVSLSKATQVIYQTMAEVGVPPTIQGSFQGTAQAFQESLKDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LAAVYIVLGILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D     +       S  D I ++        + T+MAA +  LP+      G  
Sbjct: 989  NAIMMVDFA---IDASRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLVFGHGDGAE 1045

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++V+   +++    + L++   R
Sbjct: 1046 MRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLR 1080


>gi|327394467|dbj|BAK11889.1| multidrug resistance protein MdtB [Pantoea ananatis AJ13355]
          Length = 1040

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/679 (10%), Positives = 184/679 (27%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGIL-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASIVTLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 SNLLPNDLPNPPVYSKVNPADPPIMT-LAVTTTSMPLTQVQDMVETRVAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   L  +  T+  +       N +                    
Sbjct: 184 VTLTGGQRPAVRVKMNTQALAAMGLTSEAVRTAITNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +    +                 I +       G  
Sbjct: 236 ------------VTLSANDQMKSVEDYRQLIVSYKNGAPVRLADVATIDQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    +   L A         +          S +  
Sbjct: 284 SNREPAIVLNVQRQPGANIIATADNIRTMLPSLIASLPKSVDVKLVTDRTTNIRASVTDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++++++ +      ++   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QHELMLAMGLVVMIIYLFLRNVPATIIPAVAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPMTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   +       ++ +    +      +I 
Sbjct: 464 VIGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSAESLRRQNRFSRASEAMFDRIIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL---GVLANRPVDLS 592
                         + +S+      + +L    +  G   +    +    + A + V  +
Sbjct: 524 VYGRGLSRVLNHPWLTLSVALGTLLLTVLLWIAIPKGFFPQQDNGIIQGTLQAPQSVSYA 583

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +      +    +         +F+      P  + A+ ++        +E +P    +
Sbjct: 584 SMAERTRDVASVIMKDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDARSERIPEIQQR 643

Query: 653 NTEIVGPKISRELIRKGIV 671
             + V       L  + + 
Sbjct: 644 LQQQVSKIPGVTLWLQAVQ 662



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +  + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 347 LMLAMGLVVMIIYLFLR-NVPATIIPAVAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPMTAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DVIGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|271501519|ref|YP_003334545.1| acriflavin resistance protein [Dickeya dadantii Ech586]
 gi|270345074|gb|ACZ77839.1| acriflavin resistance protein [Dickeya dadantii Ech586]
          Length = 1029

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/646 (10%), Positives = 157/646 (24%), Gaps = 38/646 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GLL           +   P                     +    
Sbjct: 10  RPVATTLLALAIALCGLL-----GYQLLPVSPLPQVDYPVI---------SVTATMPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               +I L FA  R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGINEMTSMSSLGNTRIILQFALDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  +              + ++    +        +       Q   ++   +    
Sbjct: 116 QSLLPSNMPSRPYYRKVNPSDAPIMI-ITLTSDTYGPGQLYDYASTQVAQRVSQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  +                   
Sbjct: 175 VTIGGSSLPAVRVALNPQALFNQGVSLDAVRQSIAQANVRQPLGSVDSGSTHYQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++                           +                 +   +  VL+  +
Sbjct: 235 LKTA--------------------DVYRSLIIHYNNGAPVRLSDVATVKDSVQNVLNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +       +   T++        L+A         + +        S    
Sbjct: 275 TNAKPAVLVLIRRAPDANIISTVDAIRAAMPELQAMLPASINLNIAQDRSPTIRASLRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + + AI   LV++V+F+ +  G+  L+   ++ +++I T + + L G +L   S+  + +
Sbjct: 335 ERSLAIAVSLVILVVFLFLRSGRATLIPAIAVPVSLIGTFSAMYLCGFSLNNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E I            +   G      T+   +++ +   + L F  G
Sbjct: 395 ATGFVVDDAIVVLENISRHVEAGMKPLQAALQGVREVGFTVVSMSLSLIAVFIPLLFMDG 454

Query: 483 GA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R F++++ ++ILIS+  +I++   M   ++R     S          L+     
Sbjct: 455 LPGRLFREFSVSLSVAILISLLVSITLTPMMCARLLRPHAPHSQPRARGFNRLLLGLQQG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                         ++  +     L               Q        +      S   
Sbjct: 515 YGRTLRWVLNHSRWVMMVLLGTIGLSVWLYISIPKTFFPEQDTGRLMGFIQADQSISFQA 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             +           +        +  G       +   +K      
Sbjct: 575 MKRKLQDFMTIVRADPAVDNVTGFTGGMRTNSGSMFISLKPLAQRD 620



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 61/150 (40%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +S + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAIAVSLVILVVFLFLR-SGRATLIPAIAVPVSLIGTFSAMYLCGFSLNNLSLMALTVAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
           G+ V+D +VV + +    +     +       + + E     V  S++     +P+    
Sbjct: 397 GFVVDDAIVVLENI---SRHVEAGMKPLQAALQGVREVGFTVVSMSLSLIAVFIPLLFMD 453

Query: 789 -WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   F++ ++  I+++   SI +  
Sbjct: 454 GLPGRLFREFSVSLSVAILISLLVSITLTP 483



 Score = 39.7 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 99/306 (32%), Gaps = 20/306 (6%)

Query: 544  RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             AR      S    +            Y    +  + + V      D   +         
Sbjct: 713  MARLGINVSSANTLLNDAFGQRQISTIYQPMNQYKVVMEVDPAYTQDPGSLDKMFIINND 772

Query: 604  GDISFQNFDGEKNF--------------LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            G     +F                       + +   +  + +     +++ +T +    
Sbjct: 773  GKPIPLSFFAHWQPANAPLAVNHQGLSAAATISFNLPEGASLSEATTAIERTMTSLGVPP 832

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
            TI+          ++     +V +I + + + I + + ++     L  ++TL       L
Sbjct: 833  TIRGQFAGTALAFQQSQHSQVVLIIAAIVTVYIVLGMLYENVVHPLTILSTLPSAGVGAL 892

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                LF   F+L A+  +L LIG    + +++ D     +      +S  + I ++    
Sbjct: 893  LALELFNKPFSLIALIGILLLIGIVKKNAIMMVD--FALVAQREGKLSAHEAIFRACMLR 950

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + T+MAA    LP+ +    G  +     I +  G+V++   +++    + LF   
Sbjct: 951  FRPIMMTTMAALFGALPLVLSSGDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDS 1010

Query: 826  WRAKNA 831
             R +  
Sbjct: 1011 LRWRRR 1016


>gi|238753044|ref|ZP_04614500.1| Multidrug resistance protein mdtC [Yersinia rohdei ATCC 43380]
 gi|238708742|gb|EEQ01004.1| Multidrug resistance protein mdtC [Yersinia rohdei ATCC 43380]
          Length = 1009

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/661 (12%), Positives = 185/661 (27%), Gaps = 44/661 (6%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L   I   G++           +   P       +             +   + + +  
Sbjct: 1   MLTLAITLSGII-----GFSLLPVSPLPQVDYPVIM---------VSASMPGADPETMAS 46

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    +     +        +      +I L F  +R     A  V   L    S L  
Sbjct: 47  SIATPLERSLGRIAGVNEMTSTSSLGSTRIILQFDLNRDINGAARDVQAALNAAQSLLPS 106

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                          + ++    +        +       +   +I   E          
Sbjct: 107 GMPNRPTYRKMNPSDAPIMI-MTLTSDTLSQGQLYDFASTRLAQKIAQIEGVSDVSVGGS 165

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            L  +  E +PS L     +   +       N  +                         
Sbjct: 166 SLPAVRVELNPSALFNQGVSLDAVRQAISAANVRRPQGSVE------------------- 206

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
             G       AN + KT +    +                N+   +  V +  +      
Sbjct: 207 -GGQQHWQVQANDEIKTAEGYRPLIIHHNNGSAVRLQDVANVIDSVQDVRNAGMSDGKPA 265

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              + S +   +   T++        LRA         + +        S    + +  I
Sbjct: 266 ILLVISREPGANIIATVDRIRAEIPALRASIPASIQLSIAQDRSPTIRASLDEVEQSLVI 325

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +  G  V
Sbjct: 326 AVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVV 385

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---V 485
           D  I+V E I            +   G      T+   +I+ +   + L    G      
Sbjct: 386 DDAIVVLENISRHLEAGVKPMAAALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLF 445

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRFFLIPDCIA 539
           R FA+T+ ++I IS+  ++++   M   ++R +       ++      L         + 
Sbjct: 446 REFAVTLSVAIGISLVISLTLTPMMCAHLLRARPAGEQQRIRGFGKILLRIQQGYGRSLN 505

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                 R+  V +    ++     +      +     G +   + A++ +    ++  L+
Sbjct: 506 WVLGHTRWVMVVLLSTIALNVWLYISIPKTFFPEQDTGRMMGFIQADQSISFQAMQQKLK 565

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                       D    F    +   G      + L   ++   +I+     +  +  G 
Sbjct: 566 DFMKIVSDDPAVDNVTGFTGGSRTNSGSMFISLKPLNERRESAQQIITRLRAKLAKEPGA 625

Query: 660 K 660
            
Sbjct: 626 S 626



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 85/233 (36%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V + ++S+Q    +  +       LV  +    + +A    +      +   +P 
Sbjct: 239 VRLQDVANVIDSVQDVRNAGMSDGKPAILLVISREPGANIIATVDRIRAEIPALRASIPA 298

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKT 707
           S   +         R  + +    ++I+   +++ +++  +     L     + + +  T
Sbjct: 299 SIQLSIAQDRSPTIRASLDEVEQSLVIAVALVILVVFLFLRSGRATLIPAVAVPVSLIGT 358

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N  ++ A+    G+ V+D +VV + +    +     +       + + E
Sbjct: 359 FAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPMAAALRGVRE 415

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
                +  S++     +P+ +     G +   FA+ ++  I ++   S+ +  
Sbjct: 416 VGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVISLTLTP 468



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +  + +     +++ +TE+   +T++ T     ++ +E ++  +  ++ +   
Sbjct: 788  TISFNLPEGGSLSAATAAIERAMTELGVPNTVRGTFSGTAQVFQETLKSQLWLILAAIAT 847

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L     F   F+L A+  ++ LIG    + +
Sbjct: 848  VYIVLGILYESYVHPLTILSTLPSAGVGALLALEWFDAPFSLIALIGIMLLIGIVKKNAI 907

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     IS RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 908  MMVDFALDAQRNGN--ISARDAIFQASLLRFRPIMMTTLAALFGALPLVLGSGDGAELRQ 965

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + L+    R + ++
Sbjct: 966  PLGITIVGGLVMSQLLTLYTTPVVYLYFDRLRNRFSK 1002


>gi|153805994|ref|ZP_01958662.1| hypothetical protein BACCAC_00239 [Bacteroides caccae ATCC 43185]
 gi|149130671|gb|EDM21877.1| hypothetical protein BACCAC_00239 [Bacteroides caccae ATCC 43185]
          Length = 1052

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 71/569 (12%), Positives = 165/569 (28%), Gaps = 41/569 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL      +  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQAKESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     +   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPNKLEAYNLSIETISSIIGAENKNIPGGNFDIGSETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  +++ + +                            F      I   +       
Sbjct: 232 EFDDSRQLADVVVGTH--------------------NGANIFLRDVARIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +              L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISRKVEEALPRLQKNLPSDVKLGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LAETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAISGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G +    +     M   + IS   A+S+   +    +   KK   +     +      D 
Sbjct: 452 GMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKPSKMFKLFFTPIEKALDA 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT 566
           +   + +   W V    +  +  I     
Sbjct: 512 LDTWYAKMLNWAVRHRPIVIVGCIAFFIV 540



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 91/245 (37%), Gaps = 7/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   +V  +    +SV  +R +E    ++ + +P     
Sbjct: 256 DVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISRKVEEALPRLQKNLPSDVKL 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +         I      V+ + + ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GVIVDTSDNILNTIDSLAETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AISGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++       P+ +     G +       M   + ++  +++ +   +   +   + 
Sbjct: 433 VIASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQK 492

Query: 829 KNARI 833
           K +++
Sbjct: 493 KPSKM 497



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 82/250 (32%), Gaps = 8/250 (3%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                   SV   ++  +            ++  +V +      +     V    K     
Sbjct: 782  IYNAQGQSVRVKDVGKVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNKVIDKM 841

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
             +P                     G +G++I  I + I +  +F+   +    + +L   
Sbjct: 842  DLPGEVTIQISGSYEDQQDSFRDLGTLGILI-VILVFIVMAAQFESLTYPFIIMFSLPFA 900

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
             +  L      G   ++ ++   + LIG  V + +V+ D +          ++  + +  
Sbjct: 901  FSGVLMALFFTGSTLSVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGMAVINSVVT 957

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            S    L   + T+    + ++PMA+ GG    +    AI +  G+ V+   ++ +   + 
Sbjct: 958  SGKSRLRPVLMTTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTVSTVLTLVLIPTLY 1017

Query: 821  LFIYDWRAKN 830
                    KN
Sbjct: 1018 CVFAGTGIKN 1027


>gi|218245376|ref|YP_002370747.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Cyanothece sp. PCC 8801]
 gi|218165854|gb|ACK64591.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 8801]
          Length = 1106

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 152/574 (26%), Gaps = 44/574 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G +           LD+ P   PK              + +  +
Sbjct: 11  KRPVLSTVCTIVIILLGTIAMA-----LLPLDKLPEIAPKK-------------VAVSAN 52

Query: 62  EDDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +   +  L   +        I  F+       + ++F     +      V 
Sbjct: 53  YIGADAKTTEDNVTTVLEREINGTEQVRWIDSFTDNTGNVTVNVTFPTEMDRNTAQVLVQ 112

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-----HAIEQSMEIIRQRI 171
             +    S L     +  L T T+     ++    ++                 + R   
Sbjct: 113 NRVSQAQSTLPSVVNQAGLRTNTQSPSLTLVYGFYVENGPDGQPLYDTTFIYNYVDRYIW 172

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           + +                  +    DP +L     T   +       N        G +
Sbjct: 173 NDMKGLPGVGSVALFGGANYAMRIWLDPDKLAARGLTALDVVGTINEQNFEVGIGRIGQQ 232

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                   +  +      + +              +    +                   
Sbjct: 233 PAPQDQQFELPLRVAGRFTNVA-------------EAEDMVVKVGEDGTLIRIKDVGYAE 279

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +        +        +       +   T + A    A L+    P    ++   N
Sbjct: 280 LGMENYDTKVNVDGNPGVAFLIYQLPGSNALETADAAKAKMAELQQSFPPGLKVVIGLDN 339

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      LV++V+F+ +   +  ++   +I + ++  +  L   G T
Sbjct: 340 TLFVNASLEDLMITLLQAIALVVLVIFVFLQDWRTTVIPAIAIPVALVGAMIGLKAFGFT 399

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS-TIFDSNITA 470
           L   S+   VL  GL VD  I++ E +  +  +      +        +  TI  S +  
Sbjct: 400 LNQLSLFACVLATGLVVDDGIVIVEAVSNKLSQGMRPRQAAMDAMDELFGATIATSVVLM 459

Query: 471 LIATVVLFFFGGGA--VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            +   V FF G      R FA+T+  ++  S F A++    M   ++   + K   +   
Sbjct: 460 AVFVPVTFFPGTTGIVYRQFALTIIFAVAFSTFNALTFSPTMSAILLSPPQPKHGPLALF 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
             +F     +  +  R     +    +  +    
Sbjct: 520 FNWFNRGFDLVREGYRRFINFLTHVRILVMVVFI 553



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 83/239 (34%), Gaps = 7/239 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + +  V      ++  D             +  Q    +++      +    ++ +  P 
Sbjct: 270 IRIKDVGYAELGMENYDTKVNVDGNPGVAFLIYQLPGSNALETADAAKAKMAELQQSFPP 329

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                  +         +   ++ ++ +   +++ I++    W   +     + + +   
Sbjct: 330 GLKVVIGLDNTLFVNASLEDLMITLLQAIALVVLVIFVFLQDWRTTVIPAIAIPVALVGA 389

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +     FG   N  ++ A +   G  V+D +V+ + +       +  +  R     +++E
Sbjct: 390 MIGLKAFGFTLNQLSLFACVLATGLVVDDGIVIVEAV---SNKLSQGMRPRQAAMDAMDE 446

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G ++ TS+      +P+  + G+       FA+ + F +  +  +++  +  +   +
Sbjct: 447 LFGATIATSVVLMAVFVPVTFFPGTTGIVYRQFALTIIFAVAFSTFNALTFSPTMSAIL 505



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 75/232 (32%), Gaps = 28/232 (12%)

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            L+        S    + +E V  +  +        NT                V   ++ 
Sbjct: 836  LIISPAPGYSSGQVIQAMEEVANETLQPGFGYAWTNTAAEEKSSGG----AAPVVFGLAF 891

Query: 678  IAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFAL-----FGIEFNL-----TAV--- 723
            + + + +  +++ Y      + T+ L I   LG   +         FN        +   
Sbjct: 892  VMVFLVLAAQYESYIDPTIILLTVPLAILGALGAIWIRVSFVQTAPFNPGNGIWPILNNN 951

Query: 724  ----AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
                 A++ LIG +  + +++ +      +     ++       +  E L   + T++++
Sbjct: 952  MYAQVALVMLIGLAAKNAILIVEFAN---QARDLGMTITRSAIYAAEERLRPILMTAVSS 1008

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +   P+      G     S    +  G+ +A   S+ +   + + + ++  
Sbjct: 1009 LVGFAPLLTASSVGAVSRWSLGTAIFGGLALATVLSLVLVPILYIVVKNFEK 1060


>gi|104780166|ref|YP_606664.1| acriflavin resistance protein family multidrug resistance protein
           [Pseudomonas entomophila L48]
 gi|95109153|emb|CAK13850.1| putative multidrug transport protein; acriflavin resistance protein
           family [Pseudomonas entomophila L48]
          Length = 1030

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/581 (11%), Positives = 152/581 (26%), Gaps = 37/581 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPVAPLPEADFPT-----------IQVTAALPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       + L F   +  +  A +V   +    ++L  D              S
Sbjct: 82  TQMTSSSALGSTTLILQFTLDKNIDTAAQEVQAAINTATARLPQDLPSPPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL    +        E S         Q+   +       + ++   +  +  P +L  
Sbjct: 142 PVLI-LTVSSAQMPGNELSDYAETLLARQLSQIDGVGLVNITGQLRPAIRVQAQPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           +  T A +                              +          ++   AN    
Sbjct: 201 IGLTLADVRQAI--------------------QQTSLNLAKGAFYGEHSVSTIAANDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                     +   +   +   T
Sbjct: 241 HPEDYARLIVSYRDGAPVHLADVAKVINGAENAYVKAWSGDQPGLNLVIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V +        S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRVLDALPRLQEMLPASVEVSVLQDRTQTIRASLHEVELTLMIAVALVIGVMALFLRQW 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
               +    + +++I + AL+ + G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATFIVSSVLGVSLIASCALMYVAGFSLNNLTLVAIVIAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
                 +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GDDSRTAALKGAGEIGFTVVSISFSLIAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            ++++   +    +R    +                +       R       +  ++   
Sbjct: 481 VSLTLAPTLSALFMRRPPGEHEGGFGPRLLRWYEKGLDRALAHRRITLGVFGLTLALAVA 540

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                    + +   G I     A   V  S +     +L 
Sbjct: 541 GYAGIPKGFFPLQDTGFILGTTEAAADVSYSSMIDKHLALA 581



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 89/250 (35%), Gaps = 7/250 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L+ V   +   +   +   + D     LV  +    + V     +     
Sbjct: 250 VSYRDGAPVHLADVAKVINGAENAYVKAWSGDQPGLNLVIFRQPGANIVDTVDRVLDALP 309

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
           ++ E++P S   +      +  R  + +  + ++I+   ++  + +  + W       + 
Sbjct: 310 RLQEMLPASVEVSVLQDRTQTIRASLHEVELTLMIAVALVIGVMALFLRQWSATFIVSSV 369

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L + +  +     + G   N   + A++  +G+ V+D +VV + +    +        R 
Sbjct: 370 LGVSLIASCALMYVAGFSLNNLTLVAIVIAVGFVVDDAIVVVENIH---RHLEAGDDSRT 426

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +A
Sbjct: 427 AALKGAGEIGFTVVSISFSLIAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTLA 486

Query: 817 APILLFIYDW 826
             +       
Sbjct: 487 PTLSALFMRR 496



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 81/203 (39%), Gaps = 6/203 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              ++++++   E+    +I        +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 820  DAVQILERTQRELGMPDSIAGNFQGAAQAFQSSLSSQPYLILAALVAVYIILGVLYESFV 879

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       +      G +F++  +  V+ LIG    + +++ D   +  +  
Sbjct: 880  HPLTIISTLPSAGLGAILLLWASGQDFSIMGLIGVVLLIGIVKKNGILLIDFALEAQRH- 938

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               ++    I ++        + T++AA +  +P+      G  +     I +  G++V+
Sbjct: 939  -QGMTPEQAIRQACLVRFRPIIMTTLAALLGAVPLMFGFGTGAELRQPLGIAVVGGLLVS 997

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
             + ++F    I L +     +  
Sbjct: 998  QALTLFTTPVIYLALEHLFHRRR 1020


>gi|27375467|ref|NP_766996.1| Acr family transporter [Bradyrhizobium japonicum USDA 110]
 gi|27348604|dbj|BAC45621.1| Acr family transport protein [Bradyrhizobium japonicum USDA 110]
          Length = 1048

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/684 (12%), Positives = 188/684 (27%), Gaps = 42/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+   ++  +G        + +      P                   +     
Sbjct: 11  RNPLPSVVFSIILLILGWTSFAKLAVTRLPSADIPVIS--------------VAVSQFGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ FA     +   + V   +  
Sbjct: 57  APAELESQVTKTIEDAVSGVEGVRHITSSITDGLSLTTIQFALETNTDRALNDVKDAVTR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  +  + L+       + IV              + S  +       +       
Sbjct: 117 VRSNLPQNVTEPLIQRVDVIGLPIVTYAAISPGKTPE--QLSYFVDDVVKRALQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL+ +  T   +S      N    G    +     +     
Sbjct: 175 QVERIGGVEREILVSLDPDRLQAMGLTAVNVSQSLRGTNVDVAGGRAEIGKNDQAIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +++G  +                       G           +   +A      
Sbjct: 235 GAKTLSDLAGTMVPLF--------------------GGGEVRLDDLGTVTDTIADRRTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S     +        L+A    + L +++  +V    G+   
Sbjct: 275 RFNGEPVVALGIKRSKGASDVKVADAVQKRIDALKAAYPDVDLKLID-TSVEYTNGNYEA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++A  S+ L++      + LLG +L L S   I 
Sbjct: 334 AISTLFEGAILAVVIVLLFLRDLRATIIAAISLPLSIFPAFWAMDLLGFSLNLVSFLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I       +S + +          A   I  + I        + 
Sbjct: 394 LSTGILVDDAIVEIENIVRHMNMGKSPYRAALEAADEIGLAVIAISLTIIAIFAPASFMS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ + +  S+  A  +   +  + +++   +      + R +      
Sbjct: 454 GIAGQFFKQFGITVSVQVFFSLLAARFVTPVLAAYFLKHGHHEEPPPGRVLRSYHRIVAW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV--VRS 596
           +++               SI SI LL    L      +  + L +     +  +      
Sbjct: 514 SVKHYFITVLIGFGIFAASIWSITLLPQGFLPAQDSARSLLALELPPGTQLAYTEKVTED 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +  L+        F          Q     ++      +  +      +  S  Q  E 
Sbjct: 574 IVARLRKRPEVKSIFVDGGRVPPGTQEVRRAALIINYTPKGDRDITQRELEFSISQELEN 633

Query: 657 VGPKISRELIRKGIVGVIISAIAM 680
           +       L   G+  + +    +
Sbjct: 634 IPDIRFWFLDENGLRAISLVVTGV 657



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 72/233 (30%), Gaps = 7/233 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +        +F  F+GE    + ++   G S  +       +    +            
Sbjct: 262 TVTDTIADRRTFARFNGEPVVALGIKRSKGASDVKVADAVQKRIDALKAAYPDVDLKLID 321

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
              + +       I  +   + +A++I +         + A  +L L I        L G
Sbjct: 322 TSVEYTNGNYEAAISTLFEGAILAVVIVLLFLRDLRATIIAAISLPLSIFPAFWAMDLLG 381

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL +  A+    G  V+D +V  + +   ++      S      ++ +E     +  
Sbjct: 382 FSLNLVSFLAITLSTGILVDDAIVEIENI---VRHMNMGKSPYRAALEAADEIGLAVIAI 438

Query: 776 SMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           S+           + G  G     F I ++  +  +  ++ F+   +  +   
Sbjct: 439 SLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARFVTPVLAAYFLK 491



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 79/234 (33%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  +++          +++    +      S A     + + +          ++ + 
Sbjct: 774  SVIADVKLDQGPTSINRYDRDRQATVAADLVGSAALGDATKKINELPVMKSLPKGVKVSP 833

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   EL       +    + +   + + F  +   +  + +L L I   +    + 
Sbjct: 834  SGDAESLNELSDGFATAITAGLMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIAALLVT 893

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G +        +L L+G    + +++ +   + ++         + +  +  +     V 
Sbjct: 894  GKQLTTPVWIGILMLMGIVTKNAIMLVEFAIEAIRD---GKPRDEAMIDAGMKRARPIVM 950

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T++A    ++P A+    GG      A+ +  G++ +   S+     + + + D
Sbjct: 951  TTIAMAAGMMPSALAVGAGGEFRSPMALAVIGGLIFSTILSLVFVPAMFMVMDD 1004


>gi|218532151|ref|YP_002422967.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
 gi|218524454|gb|ACK85039.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
          Length = 1054

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 63/540 (11%), Positives = 148/540 (27%), Gaps = 40/540 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  IG++  L        + ++P   P               + ++   
Sbjct: 8   RPILAGVISVIITVIGIVAGL-----TLPVAQYPEIAPPI-------------INVQATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                    +  +  L   +        I   S       I  +FA     +  A +V  
Sbjct: 50  PGASAQQAYESIAIPLEQEINGAPNLIYIQSTSSTDGSVSIDATFAVGSNLDAAAAEVLT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGI 176
                 +KL    +   L         +       D       +  +     Q I  +  
Sbjct: 110 RSSRAEAKLPEAVRAQGLEIQKSSRQRLGNVVLYADPSTGFDELFLANYAETQVIKPLRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                + +    +   +    DP+++  L  +T  +       N        G   +  +
Sbjct: 170 VTGMGRIVNFSNMRYAMRIWLDPAKMEALALSTETVLQSIQAQNAQITTGSLGKLPMDRA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +  +  K  ++             +  +    +                 +      
Sbjct: 230 TPFELQLVTKGRLT-------------RPEEFGNIVLRANPDGSVVRVSDVGRVELGSEQ 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +    +       A L     P     +   +     
Sbjct: 277 YGVTSNFDGKPSATLGIFQNPDANAVEVMNGTRATMADLAERFPPGLHYSIALDSTEFVK 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      +V +V ++ +   +  L+   ++ + +I T   ++LLG +    S
Sbjct: 337 EAIYEVVRTLFEAILIVTVVTYLFLQNWRATLIPTIAVPIALIGTFGPMALLGFSFNTLS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL +GL VD  I+V E       +  +   +     +     +  + +      V 
Sbjct: 397 LLGLVLAVGLVVDDAIIVVENTERLMAEGMAPKPASREAVNEIGGPVIATTLVLAALFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G     FA+T+ +S+LIS   ++++  A+   +++             R  L
Sbjct: 457 VAFIPGLTGQLYNQFALTIAISVLISAIVSLTLTPALCGLLLKPHAKDGPQKTRWWRKPL 516



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 95/248 (38%), Gaps = 9/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +S V       +   ++          L   Q    ++V            + E  P 
Sbjct: 262 VRVSDVGRVELGSEQYGVTSNFDGKPSATLGIFQNPDANAVEVMNGTRATMADLAERFPP 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +  +   +  +E I + +  +  + + + +  ++  + W   L     + + +  T
Sbjct: 322 GLHYSIALDSTEFVKEAIYEVVRTLFEAILIVTVVTYLFLQNWRATLIPTIAVPIALIGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSIN 766
            G  AL G  FN  ++  ++  +G  V+D ++V     +N  +L    ++ +    +++N
Sbjct: 382 FGPMALLGFSFNTLSLLGLVLAVGLVVDDAIIVV----ENTERLMAEGMAPKPASREAVN 437

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E  G  + T++      +P+A   G        FA+ +A  ++++A  S+ +   +   +
Sbjct: 438 EIGGPVIATTLVLAALFVPVAFIPGLTGQLYNQFALTIAISVLISAIVSLTLTPALCGLL 497

Query: 824 YDWRAKNA 831
               AK+ 
Sbjct: 498 LKPHAKDG 505



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              +   +    +  ++  +++     L  +    L I   +GF AL G+  ++     +L
Sbjct: 872  APLIFGLGVFMIFCFLAGQYESLRMPLVILLATPLAIFGAVGFLALRGMPLDVFGQIGLL 931

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G +  + +++     ++++         +    +    +   + TS A  +  +P+A
Sbjct: 932  LLVGLAAKNAILLVS-FAEDLR--RQGKDALEAAQHATRMRMRPILMTSFAFILGSVPLA 988

Query: 788  VWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  G+  G   S    +  G++VA   ++F+     +     R
Sbjct: 989  IASGAGAGARLSMGTVVIGGLLVATILTLFVTPVFYVAAERLR 1031


>gi|166366475|ref|YP_001658748.1| RND multidrug efflux transporter [Microcystis aeruginosa NIES-843]
 gi|166088848|dbj|BAG03556.1| RND multidrug efflux transporter [Microcystis aeruginosa NIES-843]
          Length = 1021

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/622 (9%), Positives = 174/622 (27%), Gaps = 40/622 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N    +++  ++  +G +  L   + +S     P+ +                +     
Sbjct: 11  KNPIPTILISLVMALMGYIAFLGLGIDRSPNIDIPAVI--------------ITVNQPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + L        ++ +  +  T++F      +   + V   +  
Sbjct: 57  GPEELETQVTKKVEDAVAALGNIDQITSTINEGSSTTTVNFILGTNSDRATNDVRNAIAQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    ++        +++    +         E S  + RQ    +       
Sbjct: 117 IRQDLPQDANDPIVQRLEFAGGAVMNYTISSP--KRSIAELSDLVDRQIGRALTGVPGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++  + DP RL     T   ++      N +  G    +     +     
Sbjct: 175 RVDRVGGVDREVRVDLDPGRLIAYGITATAVNDQIRSFNINLPGGRSEIAGSEQTVRTLG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   ++    ++                                  +    +      
Sbjct: 235 SAETIEDLRNYQISLP--------------------NGDTVPLSNLGTVRDSSSDPRQMA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +           +              L+          +      +   S   
Sbjct: 275 LLDGQPVVGFSILRGTGSTLVTVETAVRQEIENLKKKLPEDIKFQLIFTRADSIRASYES 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I   + +I + + +   +  ++   ++ L++  T  ++  L  TL   ++  + 
Sbjct: 335 LLSDLLIGCMMTVITVGLFLGNWRATIITGLALPLSIFPTFWVMQSLNYTLNGMTLLALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  + + E I +     +    +           +  S    +   + + F G
Sbjct: 395 LALGNLVDDAVCMVEDIDQHLAMGKKPLQAAFDASKEIGLAVLASAAAIIAVFLPVAFMG 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +S L S   A+++   +  +I++ KK+K+      S         
Sbjct: 455 GVPGQFFQPFGVTVAVSTLFSSLIAVTVTPMLSAYILQPKKLKT-GDGNPSSLPRFRPYK 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           ++     R   + +    +     L     +  G+   G   L  ++      + +   +
Sbjct: 514 SLLTWSLRHRILTLLAALAFFIGSLQLVPLIPKGLFSSGDTGLSTISLELPPGATLNDTV 573

Query: 599 ESLQIGDISFQNFDGEKNFLVR 620
                 +   Q      N L  
Sbjct: 574 AVANQVNSLLQKNTAVANVLAI 595



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 71/173 (41%), Gaps = 7/173 (4%)

Query: 658  GPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
              +I R++  + +  + ++ I++  I + +   + + L  +T+L L I  TL    +   
Sbjct: 836  DARIMRDIFARFLGALSLAIISIYGILVLLYNNFLYPLAILTSLPLSIGGTLIALLITQK 895

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            E  L A+  ++ L+G    + +++ D     +            +  S    L   + TS
Sbjct: 896  ELGLYALIGIVLLMGLVTKNAILLVDFA---LSGIEAGKPQFQAMIDSGVSRLRPIIMTS 952

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++    +LP+A+     G +    AI +  G   +   ++ +   I  +I  +
Sbjct: 953  VSTIAGMLPIALALGADGEIRAPMAIAVIGGFTTSTLLTLVVVPVIFTYIDSF 1005



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 13/209 (6%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A  + +E +KKK+ E +    I             L+   ++G +++ I + +++   
Sbjct: 298 ETAVRQEIENLKKKLPEDIKFQLIFTRADSIRASYESLLSDLLIGCMMTVITVGLFLG-- 355

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +     L L I  T           N   + A+   +G  V+D V + + + ++
Sbjct: 356 -NWRATIITGLALPLSIFPTFWVMQSLNYTLNGMTLLALALALGNLVDDAVCMVEDIDQH 414

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           + +             +  E     + ++ A     LP+A  GG        F +     
Sbjct: 415 LAMGKK---PLQAAFDASKEIGLAVLASAAAIIAVFLPVAFMGGVPGQFFQPFGVT---- 467

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           + V+   S  IA  +   +  +  +  ++
Sbjct: 468 VAVSTLFSSLIAVTVTPMLSAYILQPKKL 496


>gi|313205189|ref|YP_004043846.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Paludibacter propionicigenes WB4]
 gi|312444505|gb|ADQ80861.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Paludibacter propionicigenes WB4]
          Length = 1050

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 66/550 (12%), Positives = 158/550 (28%), Gaps = 36/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +   +G++           ++++P+  P                      
Sbjct: 8   RPVLSTVISVLFVVLGIIGIF-----SLPIEQYPNIAPPTVR---------VSTNYSGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            D V   + +  +E  + ++       S        I + F      +  A  V   +  
Sbjct: 54  ADAVLKSVIVPLEEQINGVEGMTYMTSSAANGGTASINVFFKQGTNPDMAAVNVQNRVSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +  +N +    ++  ++++                  +    + QI       
Sbjct: 114 AAALLPSEVTRNGVTVQKQQSSTVLMIMLKSKNPDYDDKFMQNYVNINILPQIKRVMGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P  ++    T ++++      N        G      +   QY
Sbjct: 174 DASVYGAKDYTMRVWLKPDVMKSYNITPSEVNAALQDQNIEAAPGELGA---NSNQSFQY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++    +      G              +I      ++         +    A      
Sbjct: 231 ALKYTGRLKNTEEFG--------------NIIIRSKNSQVLRLKDVATLELGSASYSIFT 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +  A  +    I+    +                +         S   
Sbjct: 277 RNNGAEAVVMAINQTAGSNAQDIIKDVKKVMEDAGKKLPKGISYEYQMDASEFLNASIEK 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  L+   ++ + +I T   L L G ++ L ++  +V
Sbjct: 337 VLHTLLEAFILVFIVVFLFLQNFRATLIPAIAVPVAIIGTFFFLLLFGFSINLLTLFALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSV-FCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +  +     +    +           I    +      + + F 
Sbjct: 397 LAIGIVVDDAIVVVEAVHAKMDAGMTDAKEAAIAAMGEIAPAIVSITLVMAAVFIPVSFI 456

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG +    + F +T+ ++ILIS   A+++  A+    ++ +    +    L R F     
Sbjct: 457 GGTSGVFFKQFGLTLSIAILISAVNALTLSPALCAIFLKTEHNPDLHDKSLIRRFYYYFN 516

Query: 538 IAIQFMRARF 547
           +    + AR+
Sbjct: 517 VGFAALTARY 526



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 66/502 (13%), Positives = 150/502 (29%), Gaps = 41/502 (8%)

Query: 369  VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
               + +IV+F  +L     +V +  +       +  +  L    +L   A +   +    
Sbjct: 540  WITVTIIVVFTAILGITMKIVPNGFVPSEDSGNVMGMISLSPGSSLERTAQVTARVTKIA 599

Query: 429  DS-----NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-------IATVV 476
            +S     N +    +   +    S    L          I   ++TAL       I    
Sbjct: 600  ESIPHVHNTISLTGLSFTSGMGSSYASVLIKMDPWNDRDISTGDVTALLKQRTDSIKDAT 659

Query: 477  LFFFGGGAVRGFAITMGLSILIS------MFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
              FFG   ++GF ++ G+ + +       +     +    +  + +  ++  I  +   R
Sbjct: 660  FMFFGTPTLQGFGMSSGVELKMQDKTGGSVDKFYGVTTEFLNELRKRPEVMMIMNSFDPR 719

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-----YGIDFKGGIQLGVLA 585
            F        I  ++     +   +      +  ++    N     Y +  +   Q     
Sbjct: 720  FPQKQIEANIAKIKDAGLTLNDVMSALQAYVGSMYVSNFNSYGKQYRVVVQAAPQYRSKL 779

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +    L+V  SN     I +            L R        V               +
Sbjct: 780  DDLNGLAVKTSNGVMTPISEFITVKDVTGPQALTRFNLFSSMDVTVIPNYVKGYTSGDVL 839

Query: 646  VPLSTIQNTEIVGPKISRELIRKG----IVGVIISAIAMLIYI---WIRFKWYFALGAIT 698
              L  I   E  G   S     +        +I     + +Y+    +   +   L  + 
Sbjct: 840  KALKEINLPEGYGYDFSGMTREEANSSNQTILIFGLCIIFVYLLLAALYESYILPLAVLL 899

Query: 699  TLILD-----ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            +L +      +   +      GI  N+    +++ LIG    + +++ +     ++    
Sbjct: 900  SLPIGLAGVFVFVFVSLMGGSGIVNNIYVQISLIMLIGLLAKNAILIVE---YALQRRHQ 956

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             +S      +     L   + TS+A    +LP+A+    G     S  I    G++    
Sbjct: 957  GMSIVKAAVEGATARLRPILMTSLAFIFGLLPLALATGAGAVGNKSIGISAIGGMLFGTV 1016

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
              I +   + +   +     ++
Sbjct: 1017 FGILVIPSLFIIFQNLHEHFSK 1038



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 99/253 (39%), Gaps = 6/253 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I +    ++ + L  V +         I  +N   E   +   Q    ++    + ++
Sbjct: 245 GNIIIRSKNSQVLRLKDVATLELGSASYSIFTRNNGAEAVVMAINQTAGSNAQDIIKDVK 304

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
            V +   + +P       ++   +     I K +  ++ + I + I +++  + +   L 
Sbjct: 305 KVMEDAGKKLPKGISYEYQMDASEFLNASIEKVLHTLLEAFILVFIVVFLFLQNFRATLI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
               + + I  T  F  LFG   NL  + A++  IG  V+D +VV + +   M    T  
Sbjct: 365 PAIAVPVAIIGTFFFLLLFGFSINLLTLFALVLAIGIVVDDAIVVVEAVHAKMDAGMT-- 422

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
             ++    ++ E     V  ++      +P++  GG+       F + ++  I+++A ++
Sbjct: 423 DAKEAAIAAMGEIAPAIVSITLVMAAVFIPVSFIGGTSGVFFKQFGLTLSIAILISAVNA 482

Query: 813 IFIAAPILLFIYD 825
           + ++  +      
Sbjct: 483 LTLSPALCAIFLK 495


>gi|288957951|ref|YP_003448292.1| hydrophobic/amphiphilic exporter-1 [Azospirillum sp. B510]
 gi|288910259|dbj|BAI71748.1| hydrophobic/amphiphilic exporter-1 [Azospirillum sp. B510]
          Length = 1041

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/686 (10%), Positives = 184/686 (26%), Gaps = 45/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  +  ++   +  +GL         +  +D FP       +                  
Sbjct: 10  NPVFATMMMVALMVLGLFS-----YNRLGVDLFPDIDFPVVV---------VSTSYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++  + +           + Q+ +   F            V   +  +
Sbjct: 56  PETVETDVTRPVEDAVNTIAGIKTLTSRSYEGQSVVIAEFELKTSSVQALQDVREKVSAI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            +    + K   +      +  I+      D  +    + +    +  + ++       +
Sbjct: 116 RAGFRDEVKDPQITRFNPDDQPILSIAVTSD--LRSLRDLTTLTDQIILKRLQNVRGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +  +  Q+     P +L  L     ++       N          +        +  
Sbjct: 174 ATIAGGVKRQILVRLKPEKLEALNVGVDEVIATVTNENQDVPAGTVTGQGRERVVQVEGR 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V +  ++                    +D+     G           +           +
Sbjct: 234 VRNPRDL--------------------LDLIVARRGNSPVRLSQVAEVIDGQEEQDSAAL 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGIL--AAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           L                +                      P     V   +      S S
Sbjct: 274 LNGAPALAVDVVKVQGANTVEVARGLHQAIGDLRTNGSLPPDVTLAVVRDSSRGITNSLS 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T      L ++++ + +   +  ++   ++ + V+ T  +L+ +G TL + ++  +
Sbjct: 334 NVQETLVEGGILTILIVMLFLGSWRSTVITALTLPVAVLGTFGMLAAMGFTLNMMTLMAL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IG+ +D  I+V E I     + Q    +   G +     +  + +T +   + + F 
Sbjct: 394 SLAIGILIDDAIVVRENIMRHLARGQGHRQAALDGTAEIGLAVLATTLTIVAVFLPVAFM 453

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG   R    F IT+  ++LIS+F + ++   +               +   RF      
Sbjct: 454 GGIIGRFFLQFGITVSAAVLISLFVSFTLDPMLSSLWYDPAAHGKHGRSIFGRFA---AW 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL-SVVRS 596
               F         +          ++      +   F    ++GV      DL   +  
Sbjct: 511 FGRGFDALSHGYGRLLRWGLRRRWLVVVAALAIFFGSFLLVPRIGVEFVPAADLGEQIVE 570

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
               +     +      +    +R   +   + A       +      +    T  +   
Sbjct: 571 VETPVGSSLAATTAKTRQVEAAIREFPEIAYTYATVNTGVSIGHNRGSLYLRYTPIDQRR 630

Query: 657 VGPKISRELIRKGIVGVIISAIAMLI 682
             P     L+R+ +  +    I + I
Sbjct: 631 RSPNDLAPLLRQRLSAIPGVTIGIAI 656



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V    + +LI +     W   +    TL + +  T G  A  G   N+  + A+   IG 
Sbjct: 340 VEGGILTILIVMLFLGSWRSTVITALTLPVAVLGTFGMLAAMGFTLNMMTLMALSLAIGI 399

Query: 733 SVNDKVVVYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N M+        R        E     + T++      LP+A  GG
Sbjct: 400 LIDDAIVV----RENIMRHLARGQGHRQAALDGTAEIGLAVLATTLTIVAVFLPVAFMGG 455

Query: 792 SVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      F I ++  ++++   S  +   +    YD
Sbjct: 456 IIGRFFLQFGITVSAAVLISLFVSFTLDPMLSSLWYD 492



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 88/252 (34%), Gaps = 12/252 (4%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              R + LS V +   +L    I+ ++   E N    +Q +      +     + + ++  
Sbjct: 783  TPRMIPLSQVAAVTTTLGASQINRRDLQREVNVQANVQGRAAGDAGRDLQTALARIELPP 842

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILD 703
               +    +T+ +               + ++ I + + +  +F  +   L  + +L L 
Sbjct: 843  GYRIVFGGSTKDIAETSGY-----AAQALALAVILIYLILASQFGSFLQPLAIMASLPLS 897

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +        + G   N+ +    + L+G    + +++ D      +         D + +
Sbjct: 898  LVGVFLGLLVAGSTLNIFSAIGFIMLMGLVTKNAILLVDFAN---QARGRGAGLHDALVE 954

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   V T+ A    ++P+A+    G       A  +  G++ +   ++ +    L
Sbjct: 955  AGIIRLRPIVMTTAAMIFGMIPLALGIGEGAQQRAPMAHAVIGGLLSSTILTLLVVPVAL 1014

Query: 821  LFIYDWRAKNAR 832
             ++     +  R
Sbjct: 1015 TYLDGLSRRMKR 1026


>gi|261345978|ref|ZP_05973622.1| multidrug RND efflux transporter, permease protein MdtB
           [Providencia rustigianii DSM 4541]
 gi|282565863|gb|EFB71398.1| multidrug RND efflux transporter, permease protein MdtB
           [Providencia rustigianii DSM 4541]
          Length = 1040

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/652 (11%), Positives = 168/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 18  RPVATTLFMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 64  PDVMTSAITAPLETQFGQMSGLKQMSSRSSGGASVITLMFQLTLPLDVAEQEVQAAINSA 123

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     +          VL+   +        +    I  +   +I        
Sbjct: 124 TSLLPSDLPYPPIYNKVNPADPPVLT-LAVTSNAMPLTQVQDIIETRVAQKISQVNGVGL 182

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +P  +      +  +       N +     F              
Sbjct: 183 VTLAGGQRPAVRVNLNPQAMAAKGLDSETIRSAINNANVNSAKGSFDGPTRS-------- 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +    +                NI +       G  
Sbjct: 235 ------------VTLSANDQMKSLEDYRKLIVAFKDGAPVRLGDIANIEQGAENAYLGAW 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +          +   +   T +T   L   L           +          S +  
Sbjct: 283 ANSQQAIVINVQRQPGANVIDTTDTIRALLPELIESLPASVDVEILTDRTSTIRASVNDV 342

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +  G   L+   ++ L+++ T A++   G ++   ++  + +
Sbjct: 343 QFELVLAIALVVMVIYLFLRNGIATLIPGIAVPLSLVGTFAVMYFCGFSVNNLTLMALTI 402

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +      +   G      TI     + +   + L F G 
Sbjct: 403 ATGFVVDDAIVVIENISRYLEQGDKPMVAALKGAGEIGFTIISLTFSLVAVLIPLLFMGD 462

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLI 534
             G   R FAIT+ ++ILIS   ++++   M   +             I       + + 
Sbjct: 463 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARLLKPESQHKHNRFEIACERFFEWMIA 522

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              I ++ +    W      L ++    LL+          +    +         +S  
Sbjct: 523 GYAIWLKRILNHQWLTLCVALGTLVLTVLLYMWIPKGFFPLQDSGIIQGTIESRQSISFA 582

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + +  Q+  I   +   E             ++   R+   +K       
Sbjct: 583 AMSQKQQQVAGIILADPAVENVTTYVGIDGSNATLNNARIQITLKPLDERDD 634



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 346 LVLAIALVVMVIYLFLRNGI-ATLIPGIAVPLSLVGTFAVMYFCGFSVNNLTLMALTIAT 404

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 405 GFVVDDAIVVIENI---SRYLEQGDKPMVAALKGAGEIGFTIISLTFSLVAVLIPLLFMG 461

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 462 DIVGRLFREFAITLAVAILISAVVSLTLTP 491



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 93/255 (36%), Gaps = 6/255 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         V  S L ++Q G         ++   V   +   D+ +    +  VK+ 
Sbjct: 778  DIRLQGTDGAIVPLSTLVNIQEGYGPLSINHLDQFPAVTFSFDVADNSSLEAAVNAVKQA 837

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
              +I    +I              +   +  +  + +AM I + I ++ +   +  ++TL
Sbjct: 838  EKQITMPKSITTQFQGSTLAFESALSSTVWLIFAAIVAMYIVLGILYESFIHPITILSTL 897

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   L    + G E ++ A+  ++ LIG    + +++ D            +S  D 
Sbjct: 898  PTAGVGALLALIMAGNELDVIAIIGIILLIGIVKKNAIMMID--FALAAEREQGMSPYDA 955

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++        + T+MAA +  LP+ +    G  +     + M  G++++   ++F   
Sbjct: 956  IYQACLLRFRPILMTTMAALLGALPLMLSTGVGAELRQPLGVCMVGGLIMSQILTLFTTP 1015

Query: 818  PILLFIYDWRAKNAR 832
             I L       + +R
Sbjct: 1016 VIYLMFDRLSRRISR 1030


>gi|190893124|ref|YP_001979666.1| acriflavin resistance protein (transporter protein) [Rhizobium etli
           CIAT 652]
 gi|190698403|gb|ACE92488.1| probable acriflavin resistance protein (transporter protein)
           [Rhizobium etli CIAT 652]
          Length = 1109

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/672 (11%), Positives = 195/672 (29%), Gaps = 47/672 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  IG+            + RFP+                  +     
Sbjct: 9   RNPIAPLLAFCLLIFIGI-----QSFNTLPITRFPNIDVPLV---------SISVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    ++  + F      E     V   +  
Sbjct: 55  SPAELEMQVTKEIEDAIASITGIDEIQSTVTDGSSQTNVMFRMEVPTEQAVQDVKDAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    +  ++     +  +I     +         E S  +       +       
Sbjct: 115 IRSDLPATAETPIVTKVDVEGQAIQTFAVSSPD--MSLEELSWFVDDTIKRALQGQAGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E  P++L     T A ++      N         V     +     
Sbjct: 173 RVDRYGGAEREVRIELTPAKLDAHGITAASVNQQLRGTNVDLGSGRGQVAGSEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  E++   +      F   +   V+  +++E  +   F  T               
Sbjct: 233 DARNVAELADTTIALPNGRFVKLSDLGVIKDTYEEPKSFSRFNDTP-------------- 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +   ++      +        P     + + +V    G+   
Sbjct: 279 -------VVTFGVFRSKGASEVSVAETVAQSLDKVRADNPNVKIEMIDDSVYFTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+ + +   +  L++  ++ L+ I T  ++ ++G +L L S   + 
Sbjct: 332 AIHTLLEGALLAVIVVLLFLRNWRATLISAIALPLSAIPTFWVMDMMGFSLNLVSFLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    +  ++ + +           +  +  T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIKMGKTPYRAAIEAADEIGLAVIATTFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIR-----YKKMKSIDINPLSRFFL 533
           G   +    F +T+  S+  S+  A  I   M  +++R          +  +       L
Sbjct: 452 GIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMRAEDGVDDHHDNDGLLMKGYTRL 511

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +       + R     V +           +F  G     +    I L V       L  
Sbjct: 512 VTGTTRKWYWRYTTLIVALLFTVGSVISLFMFVPGSFLPPEDASRIVLSVELPPNARLDD 571

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                +++   D        E  F++      G+   +   + +   K+ + +    + +
Sbjct: 572 TEKTTDAI--YDRVKDINGVESVFVLGGASPKGELELRRATITLALDKLDQSLVKKVVND 629

Query: 654 TEIVGPKISREL 665
                P I   L
Sbjct: 630 VLGHIPVIGPML 641



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 68/233 (29%), Gaps = 7/233 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       SF  F+        +    G S                    +       
Sbjct: 260 VIKDTYEEPKSFSRFNDTPVVTFGVFRSKGASEVSVAETVAQSLDKVRADNPNVKIEMID 319

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +       I  ++  + +A+++ +     W   L +   L L    T     + G
Sbjct: 320 DSVYFTYGNYEAAIHTLLEGALLAVIVVLLFLRNWRATLISAIALPLSAIPTFWVMDMMG 379

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL +  A+    G  V+D +V  + +    +      +      ++ +E     + T
Sbjct: 380 FSLNLVSFLALTLATGILVDDAIVEIENI---ARHIKMGKTPYRAAIEAADEIGLAVIAT 436

Query: 776 SMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +       +P++   G        F + +AF +  +   +  I   +  ++  
Sbjct: 437 TFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMR 489



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + +L L I        +     ++  +  +L L+G    + +++ D   +  
Sbjct: 898  DVIQPFTILFSLPLAIGGVAAALIITSNPLSMPVMIGILMLMGIVTKNAILLVDFAIEMR 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  ++  + + ++  +     + TS+A    +LP A+    GGS     AI +  GI
Sbjct: 958  HQ---GMARVEAMVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGI 1014

Query: 806  V 806
            +
Sbjct: 1015 I 1015


>gi|187734026|ref|YP_001879805.1| multidrug efflux system subunit MdtB [Shigella boydii CDC 3083-94]
 gi|226700686|sp|B2TYA8|MDTB_SHIB3 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|187431018|gb|ACD10292.1| multidrug resistance protein MdtB [Shigella boydii CDC 3083-94]
          Length = 1040

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVEVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QCELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----- 666
              K   + +  Q           + +++ + ++           V    +  +      
Sbjct: 283 WANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVEVTVLSDRTTNIRASVDD 342

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + I+ + M+IY+++R      +     + L +  T           N   + A+
Sbjct: 343 TQCELMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMAL 401

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G+ V+D +VV + +    +             K   E     +  + +    ++P+
Sbjct: 402 TIATGFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPL 458

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G   G +   FAI +A  I+++A  S+ +  
Sbjct: 459 LFMGDIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|254244508|ref|ZP_04937830.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexD [Pseudomonas aeruginosa 2192]
 gi|126197886|gb|EAZ61949.1| Resistance-Nodulation-Cell Division (RND) multidrug efflux
           transporter MexD [Pseudomonas aeruginosa 2192]
          Length = 1046

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/708 (10%), Positives = 172/708 (24%), Gaps = 68/708 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I   GLL+       +  + ++P+  P               + +   
Sbjct: 7   KRPNFAWVVALFISLAGLLVI-----SKLPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    +   +  L   L   +G+  F      N   +I ++F      +     V 
Sbjct: 49  YPGASAKVLVDSVTSVLEESLNGAKGLLYFESTNNSNGTAEIVVTFEPGTDPDLAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             L+   +++        L         +++   +  +    S          R   +++
Sbjct: 109 NRLKKAEARMPQAVLTQGLQVEQTSAGFLLIYALSYKEGAQRSDTTALGDYAARNINNEL 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   +S      N       FG     
Sbjct: 169 RRLPGVGKLQFFSS-EAAMRVWIDPQKLVGFGLSIDDVSNAIRGQNVQVPAGAFGSAPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +      +  K  +                 +    +                 +    
Sbjct: 228 SAQELTATLAVKGTL-------------DDPQEFGQVVLRANEDGSLVRLADVARLELGK 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T        A L A         V       
Sbjct: 275 ESYNISSRLNGTPTVDGAIQLSPGANAIQTATLVKQRLAELSAFFPEDMQYSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA---T 411
              +      T      LV +V+F+ +   ++ L+    + + ++ TL ++ LLG     
Sbjct: 335 VDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLMVMYLLGVLGEH 394

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITA 470
               S            D++      +      +  S   +      +    I    +  
Sbjct: 395 DDHVSGMVPGDRASWVDDAHRGGGRNVERIMAEEGISPAEATVKAMKQVSGAIVGITLVL 454

Query: 471 LIATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYK 518
               + L F  G      + F++++ +SIL S F A++   A+   +          +  
Sbjct: 455 SAVFLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLKPIPEGHHEKRG 514

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
              + +              +    RA  + +  + L ++     L         +  G 
Sbjct: 515 FFGAFNRGFARVTERYSLLNSKLVARAGRFMLVYAGLVAMLGYFYLRLPEAFVPAEDLGY 574

Query: 579 IQLGVLANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
           + + V                        R  + S+ +      +  G+   L    ++ 
Sbjct: 575 MVVDVQLPPGASRVRTDATGEELERFLKSREAVASVFLISGFSFSGQGDNAALAFPTFKD 634

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                  +        + E   L        V P     L   G   +
Sbjct: 635 WSERGAEQSAAAEIAALNEHFALPDDGTVMAVSPPPINGLGNSGGFAL 682



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 55/140 (39%), Gaps = 10/140 (7%)

Query: 689  KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             W   L     LI+ I       A+   G+  ++     ++T+IG S  + +++ +  ++
Sbjct: 893  SWSIPLS--VMLIVPIGAIGAVLAVMVSGMSNDVYFKVGLITIIGLSAKNAILIVEFAKE 950

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
                     S RD   ++        + TSMA  + V+P+A+  G+      +    +  
Sbjct: 951  LW---EQGHSLRDAAIEAARLRFRPIIMTSMAFILGVIPLALASGAGAASQRAIGTGVIG 1007

Query: 804  GIVVAASSSIFIAAPILLFI 823
            G++ A    +       +++
Sbjct: 1008 GMLSATFLGVLFVPICFVWL 1027


>gi|257058412|ref|YP_003136300.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 8802]
 gi|256588578|gb|ACU99464.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cyanothece sp. PCC 8802]
          Length = 1106

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/574 (11%), Positives = 152/574 (26%), Gaps = 44/574 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G +           LD+ P   PK              + +  +
Sbjct: 11  KRPVLSTVCTIVIILLGTIAMA-----LLPLDKLPEIAPKK-------------VAVSAN 52

Query: 62  EDDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +   +  L   +        I  F+       + ++F     +      V 
Sbjct: 53  YIGADAKTTEDNVTTVLEREINGTEQVRWIDSFTDNTGNVTVNVTFPTEMDRNTAQVLVQ 112

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-----HAIEQSMEIIRQRI 171
             +    S L     +  L T T+     ++    ++                 + R   
Sbjct: 113 NRVSQAQSTLPSVVNQAGLRTNTQSPSLTLVYGFYVENGPDGQPLYDTTFIYNYVDRYIW 172

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           + +                  +    DP +L     T   +       N        G +
Sbjct: 173 NDMKGLPGVGSVALFGGANYAMRIWLDPDKLAARGLTALDVVGTINEQNFEVGIGRIGQQ 232

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                   +  +      + +              +    +                   
Sbjct: 233 PAPQDQQFELPLRVAGRFTNVA-------------EAEDMVVKVGEDGTLIRIKDVGYAE 279

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +        +        +       +   T + A    A L+    P    ++   N
Sbjct: 280 LGMENYDTKVNVDGNPGVAFLIYQLPGSNALETADAAKAKMAELQQSFPPGLKVVIGLDN 339

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      LV++V+F+ +   +  ++   +I + ++  +  L   G T
Sbjct: 340 TLFVNASLEDLMITLLQAIALVVLVIFVFLQDWRTTVIPAIAIPVALVGAMIGLKAFGFT 399

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS-TIFDSNITA 470
           L   S+   VL  GL VD  I++ E +  +  +      +        +  TI  S +  
Sbjct: 400 LNQLSLFACVLATGLVVDDGIVIVEAVSNKLSQGMRPRQAAMDAMDELFGATIATSVVLM 459

Query: 471 LIATVVLFFFGGGA--VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            +   V FF G      R FA+T+  ++  S F A++    M   ++   + K   +   
Sbjct: 460 AVFVPVTFFPGTTGIVYRQFALTIIFAVAFSTFNALTFSPTMSAILLSPPQPKHGPLALF 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
             +F     +  +  R     +    +  +    
Sbjct: 520 FNWFNRGFDLVREGYRRFINFLTHVRILVMVVFI 553



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 83/239 (34%), Gaps = 7/239 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + +  V      ++  D             +  Q    +++      +    ++ +  P 
Sbjct: 270 IRIKDVGYAELGMENYDTKVNVDGNPGVAFLIYQLPGSNALETADAAKAKMAELQQSFPP 329

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                  +         +   ++ ++ +   +++ I++    W   +     + + +   
Sbjct: 330 GLKVVIGLDNTLFVNASLEDLMITLLQAIALVVLVIFVFLQDWRTTVIPAIAIPVALVGA 389

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +     FG   N  ++ A +   G  V+D +V+ + +       +  +  R     +++E
Sbjct: 390 MIGLKAFGFTLNQLSLFACVLATGLVVDDGIVIVEAV---SNKLSQGMRPRQAAMDAMDE 446

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G ++ TS+      +P+  + G+       FA+ + F +  +  +++  +  +   +
Sbjct: 447 LFGATIATSVVLMAVFVPVTFFPGTTGIVYRQFALTIIFAVAFSTFNALTFSPTMSAIL 505



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 75/232 (32%), Gaps = 28/232 (12%)

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            L+        S    + +E V  +  +        NT                +   ++ 
Sbjct: 836  LIISPAPGYSSGQVIQAMEEVANETLQPGFGYAWTNTAAEEKSSGG----AAPIVFGLAF 891

Query: 678  IAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFAL-----FGIEFNL-----TAV--- 723
            + + + +  +++ Y      + T+ L I   LG   +         FN        +   
Sbjct: 892  VMVFLVLAAQYESYIDPTIILLTVPLAILGALGAIWIRVSFVQTAPFNPGNGIWPILNNN 951

Query: 724  ----AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
                 A++ LIG +  + +++ +      +     ++       +  E L   + T++++
Sbjct: 952  MYAQVALVMLIGLAAKNAILIVEFAN---QARDLGMTITRSAIYAAEERLRPILMTAVSS 1008

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +   P+      G     S    +  G+ +A   S+ +   + + + ++  
Sbjct: 1009 LVGFAPLLTASSVGAVSRWSLGTAIFGGLALATVLSLVLVPILYIVVKNFEK 1060


>gi|171058651|ref|YP_001791000.1| acriflavin resistance protein [Leptothrix cholodnii SP-6]
 gi|170776096|gb|ACB34235.1| acriflavin resistance protein [Leptothrix cholodnii SP-6]
          Length = 1025

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/690 (12%), Positives = 194/690 (28%), Gaps = 52/690 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +     L++       +  +  +P                     L   
Sbjct: 9   RRPVFATVMSLL-----LVLVGLVSYTRLQVREYPRIDEPVVT---------VRTKLIGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +    I     R  Q++IT+ F   +  +N A  V   +  
Sbjct: 55  SAEVIESQVSKPLEDSIAGIDGVDIITSISRSEQSQITVRFKLEKDPDNAAADVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L     + ++          +    + + +   AI  +  I R    ++       
Sbjct: 115 VRGRLPDAIDEPVIAKVEADATPTIWLAFSSETITPLAI--TDIINRVVKPRLQTVPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +    D  +L     T   +       N          R    +  ++ 
Sbjct: 173 DVQINGDRTYAMRIWLDADKLASYRLTVQDVEDALRRQNLEVPAGRIESRQREFNVTSRT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +                      D++   +            I +  A      
Sbjct: 233 DLNTEAQFG--------------------DVALKVVSGYSVRLRDVARIEQAPASERSIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +A  +          +   ++    P     V   N      S   
Sbjct: 273 RLNGTPAISTGVIRQATANPLEVSAAVRAVLPKIQDDLPPGLQVTVANDNSIFIDRSVKS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ + + +  ++   +I +++I    L+S+ G T+   ++  +V
Sbjct: 333 VYTTITEAVVLVALVVFVFLRHLRAAVIPLVTIPVSLIGAFTLMSVAGFTVNTLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +    F +   G       +    +T       L F  
Sbjct: 393 LAIGLVVDDAIVVLENIFRHIEEGLEPFQAALKGAKEIGFAVVAMTLTLAAVYAPLAFTP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA+T+  ++++S F A+++   M   ++R+    +     +          
Sbjct: 453 GRTGRLFAEFALTLAGAVVVSGFVALTLTPMMCSLLLRHNAKPNRFDRVMEAGLDRLTAG 512

Query: 539 AIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS- 592
               +R          V ++   +               ++ +G I   + +     L  
Sbjct: 513 YTWVLRGLLGQRWIVLVVMAASGAGSWWLFSHAKSELAPLEDRGVIITTINSPDGATLDY 572

Query: 593 ------VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  +          D  F               +  D   ++R    + + +    
Sbjct: 573 TARYARAIEGIAADFPELDRKFVITGNPTVAQATAILRAVDWTERSRTTAEIARAMQPQF 632

Query: 647 PLSTIQN-TEIVGPKISRELIRKGIVGVII 675
                 +   +  P + +    + I  VI+
Sbjct: 633 ASLPGVSAFPVTPPSLGQGFRERAINFVIL 662



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 62/161 (38%), Gaps = 7/161 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +  +++ + + + +  +F+ +      +  + L +   L      G   N+ +   ++TL
Sbjct: 850  LVFVLALLFIFLVLAAQFESFVDPFIIMLAVPLSMVGALAALQWSGGTLNVYSQIGLITL 909

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G      +++ +    + +L     S  D   ++ +  L   + T+ A  +  LP+A+ 
Sbjct: 910  VGLITKHGILIVEF---SNQLRQQGKSVMDATLEAASLRLRPILMTTGAMVLGALPLALA 966

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               G          +  G+ +    +IF+   I   +   +
Sbjct: 967  EGAGAESRQQIGWVIVGGMSLGTLLTIFVVPTIYTLMARKQ 1007



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
              A+  + T+ + +       ++ G   N   + A++  IG  V+D +VV + +    +
Sbjct: 355 LRAAVIPLVTIPVSLIGAFTLMSVAGFTVNTLTLLALVLAIGLVVDDAIVVLENI---FR 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                +       K   E     V  ++       P+A   G        FA+ +A  +V
Sbjct: 412 HIEEGLEPFQAALKGAKEIGFAVVAMTLTLAAVYAPLAFTPGRTGRLFAEFALTLAGAVV 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           V+   ++ +   +   +    AK  R
Sbjct: 472 VSGFVALTLTPMMCSLLLRHNAKPNR 497


>gi|170725727|ref|YP_001759753.1| acriflavin resistance protein [Shewanella woodyi ATCC 51908]
 gi|169811074|gb|ACA85658.1| acriflavin resistance protein [Shewanella woodyi ATCC 51908]
          Length = 1035

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 62/648 (9%), Positives = 171/648 (26%), Gaps = 40/648 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVVAIVLSLLLCVFGAVS-----FSKLAIREMPDVESPVVT---------VMTTYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            V   +  
Sbjct: 55  SATIMESQITTALEDELTGISGIDEITSVTRNGMSRITITFDLDWDLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +    ++          +    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPDEANDPIVSKDNGSGEPSIYINLSSS--VMDRTQLTDYAQRVLEDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     TTA +                          N  
Sbjct: 173 SVSISGGLYKVMYVQLKPELMAGRNVTTADIIASLKRE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      +   TA            +          +     ++           
Sbjct: 214 TPGGEVRNDTTVMTVRTARLYNHAEDFDYLVVRTASDGSPVYLKDVASVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     + A      ++         +V+  +      S + 
Sbjct: 274 KSDGVPNLSLGIIAQSDANPLLVAKAAHKEVERIQQFLPAGTELVVDYDSTVFIDRSITE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I      +  G ++ L ++  ++
Sbjct: 334 VYNTLFITGGLVVLVLYIFIGQVRATLIPAVTVPVSLISAFIAANFFGFSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHLEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + +S++ S   A+++   +   +++     +            L   
Sbjct: 454 GMVGRLFTEFSVMLAMSVIFSSIVALTLTPVLGSKMLKANVKPNRFNLWVDKLFNKLEFG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    RF      ++    +   L    +   +  +    +     +  + +    
Sbjct: 514 YRKTVAQAVRFRFAAPLVIILCIAGSALLMKSVPSQLAPQEDRGVIFAFVKGAEGTSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              ++ I +       G+          P            V  ++  
Sbjct: 574 MTANMDIVEQRLMPLLGQGVIKSFSVQAPAFGGRAGDQTGFVIMQLES 621



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 93/269 (34%), Gaps = 9/269 (3%)

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            N+  DF   +        PV L  V S     +  + +F++       L  +     + 
Sbjct: 234 YNHAEDFDYLVVRTASDGSPVYLKDVASVFIGAENENSTFKSDGVPNLSLGIIAQSDANP 293

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWI 686
           +   +      ++I + +P  T    +          I +    + I    + +++YI+I
Sbjct: 294 LLVAKAAHKEVERIQQFLPAGTELVVDYDSTVFIDRSITEVYNTLFITGGLVVLVLYIFI 353

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             +    L    T+ + +         FG   NL  + A++  IG  V+D +VV + +  
Sbjct: 354 -GQVRATLIPAVTVPVSLISAFIAANFFGFSINLLTLMALILSIGLVVDDAIVVVENI-- 410

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAF 803
                           K   E     V T+    +  LP++   G V      F++ +A 
Sbjct: 411 -FHHLEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGRLFTEFSVMLAM 469

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++ ++  ++ +   +   +     K  R
Sbjct: 470 SVIFSSIVALTLTPVLGSKMLKANVKPNR 498



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 48/140 (34%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   +  + T+ + +        L G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPMVVMFTVPMGVFGGFLGLYLTGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    +     I  +    L   + T+    +  +P+ +    G     +    + FG+
Sbjct: 931  QLRDRGLELEQAIIDASARRLRPILMTAFTTLVGAVPLILSTGAGSESRIAVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYD 825
              A   ++ +   +   I  
Sbjct: 991  AFATFVTLLVIPAMYRLISG 1010


>gi|254456638|ref|ZP_05070067.1| AcrB/AcrD/AcrF family protein [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083640|gb|EDZ61066.1| AcrB/AcrD/AcrF family protein [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 1042

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/682 (10%), Positives = 187/682 (27%), Gaps = 37/682 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  ++   GL         +  +   P  +    +           +  +  
Sbjct: 9   RRPVVAWVLSLILIVFGLF-----VYSELPVRELPDGLQPPVVQ--------VKVNYKSA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  +    +++    +            ++ I + F      ++ A+ +   +  
Sbjct: 56  SAPIIDQEITQVIEDVIGGAEGIKNIDSKSENGRSSINIEFDTDIELDDAANDIRERVAR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     ++       + +    +        +E      R  +D     +   
Sbjct: 116 IVDNLPSEADAPQILKQAAGFTTTMWLSVSSSTWSD--LELGDYADRYLVDAFSSVKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + L      + +    DP +L     T  ++       N S          +  +     
Sbjct: 174 RILLGGLRELSVRIWIDPIKLAANDMTIQEVENALRNENISLPAGTLEAENIDLTI---- 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                      +L+ +  N D     P+       +       V    + +        +
Sbjct: 230 -----------NLDKSYTNIDELKFLPIKKTKDQIVRLSDVANVELGPVSEKTLFKSQSK 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         K+  S              ++          V          +   
Sbjct: 279 NKLNQKTVGIGIYAKSGASTVELSNEIQKKIKEVKKTLPDSLKLDVSFNRATYVKAAIDE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV+I++++ +   K  +V   ++ +++I +   + L   ++ +  +   +
Sbjct: 339 VYKTLAIAFVLVVIIIYLFLGNIKAVIVPAVALPVSLIASFLGIYLFDLSINIFVLLSFI 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+  D ++++ + I       +S   +   G  +    I  + +  L   + L F  
Sbjct: 399 LAIGIITDDSVIMTDAIYRRIENGESPLIAAYNGSKQITFAIIATTLILLAVFIPLIFIK 458

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G +    R  AI +  SI++S F A+++   +    +  K      +   + FF      
Sbjct: 459 GISGTLFRETAIALSFSIVVSSFVALTLSPMLGSKFLNKKTSSGFFVRKFNVFFQGFSNF 518

Query: 539 AI----QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  ++  +   +   IL    S+ L              G+ L +           
Sbjct: 519 YRETLDYWLNKKKTIITFIILIIAGSVALFMFTTKELLPKEDRGVYLVIGFTDEGSSFDY 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                 +    +          +   +   PG   +       +   + E          
Sbjct: 579 TQEKAQVVEKRLLPLLQAENSPYEKFIMRVPGFGSSANSFNSFIIIALLEDWKKRDKDTM 638

Query: 655 EIVGPKISRELIRKGIVGVIIS 676
            I+   I + +     +   IS
Sbjct: 639 IIMRQAIGKIVTVPQTLAFPIS 660



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 79/228 (34%), Gaps = 9/228 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              L   Q  +   Q   G   +          S    + ++ VKK + + + L    N 
Sbjct: 269 EKTLFKSQSKNKLNQKTVGIGIYAKSGASTVELSNEIQKKIKEVKKTLPDSLKLDVSFNR 328

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                    E+ +   + +    + ++IY+         +     L + +  +     LF
Sbjct: 329 ATYVKAAIDEVYKT--LAIAFVLVVIIIYL-FLGNIKAVIVPAVALPVSLIASFLGIYLF 385

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            +  N+  + + +  IG   +D V++ D +    +      S          +     + 
Sbjct: 386 DLSINIFVLLSFILAIGIITDDSVIMTDAI---YRRIENGESPLIAAYNGSKQITFAIIA 442

Query: 775 TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           T++      +P+       G++    AI ++F IVV++  ++ ++  +
Sbjct: 443 TTLILLAVFIPLIFIKGISGTLFRETAIALSFSIVVSSFVALTLSPML 490



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 76/219 (34%), Gaps = 13/219 (5%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            R      +      + E ++     +  ++        G     +     +  +I +   
Sbjct: 813  RAVTISANINENYSLFEAIEYLENIMADVAPTNQITWKGESEEVKETTNELY-IIFALGL 871

Query: 680  MLIY--IWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +  Y  +   F  +      + T+ L +   L F        N+ +  A++ LIG S  +
Sbjct: 872  LTAYLVMAATFNSFIHPFIIMLTVPLAVFGGLVFILFLNSSINIFSQIALVILIGISTKN 931

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
             +++ D      ++ TT     D + ++        + TS++  I+++P+ +        
Sbjct: 932  SILIVD---YANQIRTTGKKIEDSVKEACELRFRPIMMTSISTMIAMIPLVIGNIGPGAG 988

Query: 797  ------FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                      +  G++++   ++++   + L +     +
Sbjct: 989  EASRLAVGATILGGMIISTFFTLYVTPTMYLTLAQNTKR 1027


>gi|172037457|ref|YP_001803958.1| RND multidrug efflux transporter [Cyanothece sp. ATCC 51142]
 gi|171698911|gb|ACB51892.1| RND multidrug efflux transporter [Cyanothece sp. ATCC 51142]
          Length = 1104

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 76/644 (11%), Positives = 164/644 (25%), Gaps = 53/644 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G +           LD+ P   PK              + +  +
Sbjct: 11  KRPVLSTVCTIVIILLGTISMAV-----LPLDKLPEIAPKK-------------VAVTAN 52

Query: 62  EDDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +   +  L   +        I  F+       I ++F     +      V 
Sbjct: 53  YIGADAKTTEDNVTTVLEREINGTEQVRWIDSFTDNTGNVSINVTFPTEMDRNTAQVLVQ 112

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-----HAIEQSMEIIRQRI 171
             +    S L     +  + T T+     ++     +                 + R   
Sbjct: 113 NRVSQAQSTLPSVVNQAGVRTNTQSPSLTLVYGFYAENGPDGQPLYDKTFIYNYVDRYVW 172

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           +++                  +    DP +L     T   +       N        G +
Sbjct: 173 NEMKGLPGVGSVGLFGGANYAMRIWLDPDKLAARGLTALDVVGVINEQNFDVGVGRIGQQ 232

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                   +  +  +                    +    +                   
Sbjct: 233 PAPPEQQFELPLRVQGR-------------FQTVAEAEDMVVKVGNDGTLIRIGDVGYAE 279

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +        +        +       +   T + A    A L     P    ++   N
Sbjct: 280 LGMENYDTVVNVDGFTGVAFLIYQLPGSNALETADAAKAKMAELEPNFPPGLKVVIGLDN 339

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S +    T      LV++V+F+ +   +  ++   +I + ++  +  L+  G T
Sbjct: 340 TLFVNASLNDLSITLLQAIALVVLVIFVFLQDWRTTIIPGIAIPVALVGAMIGLNAFGFT 399

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS-TIFDSNITA 470
           L   S+   VL  GL VD  I++ E +  +  +      +        +  TI  S +  
Sbjct: 400 LNQLSLFACVLATGLVVDDGIVIVEAVSSKLAQGMRPTQAAMDAMDELFGATISTSVVLM 459

Query: 471 LIATVVLFFFGGGA--VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            +   V FF G      R FA+T+  ++L S F A++    M   ++   + K       
Sbjct: 460 AVFIPVCFFPGTTGIVYRQFALTIIFAVLFSTFNALTFSPTMSAILLGPPEEKHGP---- 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                +                      +  +   +    L  G     G     + +  
Sbjct: 516 -----LAVFFRWFNQGFDVIREAYRGFINFLTRIRIIIMALFIGGLVATGWIYTTMPSGF 570

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           +           +        N+    +  V    Q  D+  QT
Sbjct: 571 IPAEDQGYFFALVDAPPGVSLNYTQAIDRQVTDIIQNMDNAEQT 614



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/212 (9%), Positives = 76/212 (35%), Gaps = 10/212 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    +  ++      + +    +  +       +L    +  + +  + + +++ 
Sbjct: 311 ETADAAKAKMAELEPNFPPGLKVVIGLDNTLFVNASLNDLSITLLQAIALVVLVIFVFLQ 370

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   +     + + +   +     FG   N  ++ A +   G  V+D +V+ + + 
Sbjct: 371 ---DWRTTIIPGIAIPVALVGAMIGLNAFGFTLNQLSLFACVLATGLVVDDGIVIVEAV- 426

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
                    +        +++E  G ++ TS+      +P+  + G+       FA+ + 
Sbjct: 427 --SSKLAQGMRPTQAAMDAMDELFGATISTSVVLMAVFIPVCFFPGTTGIVYRQFALTII 484

Query: 803 FGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
           F ++ +  +++  +  +  + +     K+  +
Sbjct: 485 FAVLFSTFNALTFSPTMSAILLGPPEEKHGPL 516



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 71/217 (32%), Gaps = 26/217 (11%)

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF- 692
             +    + + +         +        +       +   ++ + + + +  +++ Y  
Sbjct: 848  QVIQAMEAVAQETLQPGFGYSWTNTAAEEQSSAGAAPIVFGLAFVMVFLVLAAQYESYID 907

Query: 693  ALGAITTLILDITKTLGFFALFGIEF------------------NLTAVAAVLTLIGYSV 734
                + T+ L I   LG      + F                  N+ A  A++ LIG + 
Sbjct: 908  PTIILLTVPLAILGALG-MIWLRVTFVQTAPFNPGNGIWPVLNNNMYAQVALVMLIGLAA 966

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGG 791
             + +++ +      +     +S       +  + L   + T++++ +   P+      G 
Sbjct: 967  KNAILIVEFAN---QSRDLGMSITQAAISASEQRLRPILMTAVSSLVGFAPLLAASSVGA 1023

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                S    +  G+ +A   S+ +   + + I ++  
Sbjct: 1024 VSRWSLGTAIFGGLALATVLSLVLVPILYIVIKNFEK 1060


>gi|116253615|ref|YP_769453.1| RND family transmembrane transporter [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258263|emb|CAK09365.1| putative RND family transmembrane transporter [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1036

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 88/684 (12%), Positives = 187/684 (27%), Gaps = 39/684 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++   I   GLL           + ++P   P              +      
Sbjct: 7   RRPIFAWVIAITIMLAGLLAIF-----TLSISQYPDIAPTTVR---------INATYRGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + L        +       I L+F  S   +    +V   LQ 
Sbjct: 53  SAETVEKSVTTIIEDGMTGLDDLTYMTSTSSTGSASIQLTFGTSADPDIAQVQVQNKLQL 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D     +  T      +++          ++++    +     DQI   E   
Sbjct: 113 VQSQLPSDVIDAGISVTRSTSSILLVGSLVSTDGKRNSVDLGNIMSTSIEDQIQRLEGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +   T + ++      N        G +          
Sbjct: 173 SINVFGSG-YAMRVWLDPFKLLKYQLTPSDVTSAIQAQNTQVSVGSLGAQPTIPGQQINV 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +++                     I   E             I           
Sbjct: 232 TITAQSQLT-------------TVADFEHIILKVEKDGATVRLSDVSRIEIGQESYGGSS 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +   T         ++  G                   S   
Sbjct: 279 RYNGQPSTGFAVNLAIGANAIDTAARVRSALEVIGRGLPAGVEITYPYDTTPFVELSIEK 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +VL + +   +  L+   ++ + ++ T  +L++ G ++   ++  +V
Sbjct: 339 VVHTLIEAIVLVFVVLLVFLQNLRATLIPTIAVPVVLLGTFGVLAVTGYSINTLTMFAMV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +     + + S   + +         I    +      + + FF
Sbjct: 399 LAIGLLVDDAIVVVENVERIMSEEKLSPLEATEKSMGEITGAIVGIALVLTAVFIPMAFF 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFF 532
           GG      R F+IT+  ++L+S   A+ +  A+   +        K       N      
Sbjct: 459 GGSTGIIYRQFSITIVSAMLLSALVALVLTPALCATMLKPVGEHRKHRVGDWFNRNFTRS 518

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY--GIDFKGGIQLGVLANRPVD 590
                  I ++  R   V +  L        LFT   +     + +G +   V       
Sbjct: 519 TNGYISTIGYLLKRPIRVMLVFLLVGAGCAYLFTRLPSSFLPQEDQGVLLTIVTTPPGST 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               ++ +E ++      +    +  F        G       V   +K       P  +
Sbjct: 579 TQQTQAVVEKVEKYYRENEKDAVDSVFGALGFGFSGSGQNSAIVFTKLKDFSLRTDPTLS 638

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
            Q+           +    +  ++
Sbjct: 639 AQSVVNRALGNFFAIREAQVFALL 662



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 66/169 (39%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  +   IS + + + +   ++ W      I  + + I   L    +FG   ++     +
Sbjct: 866  QAPMLYAISVLVVFLCLAALYESWSIPFSVIMAVPVGILGALTAATVFGQANDVYFKVGL 925

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LT IG +  + +++ +  +       + +   +   ++    L   + TS+A  + V+P+
Sbjct: 926  LTTIGLAAKNAILIVEFAKD---RMESGMGLYEATLEAARLRLRPIIMTSLAFILGVVPL 982

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+    G +   +  I +  G++ A    IF      + I    A   +
Sbjct: 983  AIATGAGSAAQNAIGIGVLGGMLAATMLGIFFVPSFFVVIRRIFATRGK 1031



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T G  A+ G   N   + A++  IG  V+D +VV + +     
Sbjct: 361 LRATLIPTIAVPVVLLGTFGVLAVTGYSINTLTMFAMVLAIGLLVDDAIVVVENV--ERI 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
           +    +S  +  +KS+ E  G  V  ++      +PMA +GGS       F+I + 
Sbjct: 419 MSEEKLSPLEATEKSMGEITGAIVGIALVLTAVFIPMAFFGGSTGIIYRQFSITIV 474


>gi|115523699|ref|YP_780610.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
 gi|115517646|gb|ABJ05630.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
          Length = 1034

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/571 (11%), Positives = 170/571 (29%), Gaps = 39/571 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  IG   A         + ++P                         
Sbjct: 9   KRPVLSLVVSMLILLIGFKAA-----TSLPIRQYPKLSNTVVT---------ITTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    ++  +  +       S  Q Q+ I++    +        +V   +  
Sbjct: 55  SPELMQGFITTPIEQAVAAAEGVDYMTSSSTQGQSLISVYIKLNVDPNQALTEVLSKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   +  +    +++ +T +  +++    + +++   AI  S  + R     +   +   
Sbjct: 115 VKYLIPREANDPVILKSTGQTTAVMYIGFSSEELSGSAI--SDYLARVVQPILSTVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP R+     +   ++      N           F+  +     
Sbjct: 173 SADILGGQTFAMRIWLDPVRMTGRGVSPDDVAAAIRANNYQAAAGQTKGYFIVSNVTTNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                    +  +    ++                +           
Sbjct: 233 DL--------------------QNVEQFKRMTVKSKDGGFVRLEDVAKVELAAQSTDSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +             Q +    +     L   +     P     V   +      S   
Sbjct: 273 AFSGERAIFIGVQATPQGNPLNIVTGVRKLFPDIERNLPPSLKMKVAYDSTNFIRSSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L++I   +L+ ++G ++ L ++  +V
Sbjct: 333 VEATLIEAILIVVVVIFLFLASFRSVIIPVVTIPLSLIGVCSLMLVMGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +  +G       +    IT       + F G
Sbjct: 393 LAIGLVVDDAIVVVENIYRHLEEGKSPVQASLIGAREIVGPVISMTITLAAVYAPIGFLG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  ++++S   A+++   M   ++R            + F       
Sbjct: 453 GLTGALFREFAFTLAGAVIVSGVIALTLSPMMCSVLLRPHAQSWFAQKVDAVFSASTRWY 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGL 569
             Q  R+  +    ++        + F +  
Sbjct: 513 GRQLDRSLDYRPVTALFAVAILFLVGFMYQN 543



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 72/188 (38%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           ++   +++ +   + +    ++         E+    I  ++I  + + +++     +  
Sbjct: 301 KLFPDIERNLPPSLKMKVAYDSTNFIRSSIDEVEATLIEAILIVVVVIFLFLA---SFRS 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +        + G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 358 VIIPVVTIPLSLIGVCSLMLVMGFSINLLTLLAMVLAIGLVVDDAIVVVENI---YRHLE 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              S          E +G  +  ++       P+   G   G++   FA  +A  ++V+ 
Sbjct: 415 EGKSPVQASLIGAREIVGPVISMTITLAAVYAPIGFLGGLTGALFREFAFTLAGAVIVSG 474

Query: 810 SSSIFIAA 817
             ++ ++ 
Sbjct: 475 VIALTLSP 482



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 80/248 (32%), Gaps = 10/248 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V  N    + +             +  +++   +   +    PG +V Q       + 
Sbjct: 762  IYVPTNTGQQVQLATVVTIETATDPNALTHYNQLNSATFQAVPMPGVTVGQAVDFLEAQA 821

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
            K                  +   +L          + I + + +  +F+     L  + +
Sbjct: 822  KNLPSGYGHDYLADARQYVQEGNQLAVT----FGFALIIIFLVLAAQFESLRDPLVIMIS 877

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + + ++  L          N+     +LTL+G      +++ +  R+           R 
Sbjct: 878  VPMAVSGALLPLFFGVATINIYTQVGLLTLVGLISKHGILMVEFARE--LQIKEGFEKRA 935

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVIGSFAIPMAF--GIVVAASSSIFIA 816
             I+++    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+ 
Sbjct: 936  AIEQAARVRLRPILMTTAAMVTGLIPLLSASGAGAASRFSIGLVVVSGMTIGTLFTLFVL 995

Query: 817  APILLFIY 824
              + + I 
Sbjct: 996  PAVYVAIG 1003


>gi|159899622|ref|YP_001545869.1| protein-export membrane protein SecF [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892661|gb|ABX05741.1| protein-export membrane protein SecF [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 322

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 142/304 (46%), Gaps = 19/304 (6%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV--------DLSVVR 595
           R R+    ISIL  I  +  +   GLN G+DF GG +  +              D++ V 
Sbjct: 6   RRRYLWFAISILTIIPGLISMLVFGLNLGVDFSGGARWEIHIPSISETRDGLENDVNAVF 65

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +            Q     + F++                 +     ++    + I+  +
Sbjct: 66  AESGIEGARTQLSQGTTNNQQFVIAFVRSKSVQSDSAERKAVETGLTSKFGADTRIETVQ 125

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGF 710
            VG  +    IR  IV V I+++A++ Y+W  F+       + + AI  ++ D+   +G 
Sbjct: 126 TVGETVRGRSIRNAIVAVFIASLAIMGYLWAAFRGTPNPIRYGVCAIIAMLHDVLVVIGM 185

Query: 711 FALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            ++ G     E +   + AVLT+I +SV+D +VV+DR+R+N++   +S  +  ++++SI 
Sbjct: 186 ASILGWLIGLEVDALFMTAVLTVISFSVHDTIVVFDRVRENVR--RSSDDYERVVNRSIV 243

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +TL RS+ T   +F ++  + ++GG  I SF + +  G++    SSIF AA +L+   + 
Sbjct: 244 QTLTRSINTQFTSFFTLTALLLFGGESIRSFVLILLLGLISGTYSSIFNAAQLLVVWENR 303

Query: 827 RAKN 830
             +N
Sbjct: 304 EWRN 307


>gi|17549419|ref|NP_522759.1| drug efflux pump transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|17431672|emb|CAD18349.1| probable drug efflux pump transmembrane protein [Ralstonia
           solanacearum GMI1000]
          Length = 1041

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 81/675 (12%), Positives = 176/675 (26%), Gaps = 39/675 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATTLLMVAILLSGLVAYRMLPLSALPEVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F  S   +    +V   +   
Sbjct: 56  PDVMTSSITAPLERQFGQMPGLKQMTSASSGGASVITLQFDLSLSLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +      + +L+   I        +    +  +   ++        
Sbjct: 116 GNLLPTDLPMPPIYSKVNPADAPILT-LAITSRTLPLPKLEDIVDTRVAQKLSQLPGIGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  +   +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRIQANTQALAALGLSIDDIRTAIGNANVNGAKGSFDGPMRASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                       +                 I            
Sbjct: 235 LRSAAE--------------------YGTMIVAYKNGAPIRLTDVAQIIDGAENSKLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +  A  L   L+          V          S +  
Sbjct: 275 ANTTPAIILNVQRQPGANVIDVVNRAKALLPQLKDTLPANIDVAVLTDRTTTIRASVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFELLLAVALVVMVIFLFLRNIPATIIPAVAVPLSLVGTFGVMYLAGFSVNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I            +   G  +   TI     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMIENIARYIEDGDPPMEAALKGARQIGFTIISLTFSLIAVLIPLLFMSD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ +SILIS   ++++   M   ++R+           +      + IA
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLRHIPEPEQTRFYHAAGQFFDNVIA 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
            Q+ R   W +       + +I  L   GL Y    KG   +             +S   
Sbjct: 515 -QYGRMLQWVLDRQRTTLLVAIGTLALTGLLYVYVPKGFFPVQDTGVIQGISDATQSISF 573

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                          K+  V               L   +  I      +   +   +  
Sbjct: 574 PAMAERQQKLAEVILKDPAVESLSSFIGVDGTNTTLNSGRMLINLKPKDARDADATEIIQ 633

Query: 660 KISRELIRKGIVGVI 674
           ++  EL + G + + 
Sbjct: 634 RLQPELAKVGGISLF 648



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 60/148 (40%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++ + M+I++++R      +     + L +  T G   L G   N   + A+    G+
Sbjct: 340 LAVALVVMVIFLFLR-NIPATIIPAVAVPLSLVGTFGVMYLAGFSVNNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +         +   K   +     +  + +    ++P+      
Sbjct: 399 VVDDAIVMIENI---ARYIEDGDPPMEAALKGARQIGFTIISLTFSLIAVLIPLLFMSDV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FAI +A  I+++A  S+ +  
Sbjct: 456 VGRLFREFAITLAVSILISAVVSLTLTP 483



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 91/273 (33%), Gaps = 15/273 (5%)

Query: 571  YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
              +         +         V      ++     S       +     + +      +
Sbjct: 759  PQLQKGPQSLYDLRVASTGGQQVPLGAFATVVEQPGSLVVNHQGQFPSATISFNLARGAS 818

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
                ++ +      I   +++Q +        +  +   +  ++ + I M I + + ++ 
Sbjct: 819  LGAAVDAINAAEQAIGLPASMQTSFQGAALAFQSSLSNELWLILAAIITMYIVLGVLYES 878

Query: 691  YFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                  I + +          +L   G +  + A+  ++ LIG    + +++ D   +  
Sbjct: 879  TIHPVTILSTLPSAG-VGALLSLLVSGKDMGIIAIIGIILLIGIVKKNAIMMIDFALE-- 935

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++ RD I ++        + T+MAA +  LP+ +    G  +     I M  G+
Sbjct: 936  AEREQGMAPRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGVGSELRQPLGITMVGGL 995

Query: 806  VVAASSSIFIAAPILLF-------IYDWRAKNA 831
            +V+   ++F    I L        + DWR + A
Sbjct: 996  LVSQVLTLFTTPVIYLAFDSLGHRLRDWRERRA 1028


>gi|148556743|ref|YP_001264325.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Sphingomonas
           wittichii RW1]
 gi|148501933|gb|ABQ70187.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingomonas wittichii RW1]
          Length = 1048

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 68/555 (12%), Positives = 158/555 (28%), Gaps = 42/555 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I      +     L    + ++P+  P               + +  + 
Sbjct: 9   RPIFAWVIAIVIM-----LLGAGGLLSLPVSQYPNIAPP-------------SVNIRANY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++   +  +   L            S    + +IT++F  S   +    +V  
Sbjct: 51  PGASAETVESNITQIIEQQLSGIDGLLYFSSSSSSAGRAQITVTFDKSVDADIAQVQVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q    +L    ++  LV T      +++     +   +  ++ +  +     D IG  
Sbjct: 111 KVQQALPRLPQQVQQQGLVVTKSNPDFLMVVSVYDESDRASNLDVADYLTSTLQDGIGRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP RL     T   ++      N        G     DS 
Sbjct: 171 PGVGDVNVFGAP-YAMRIWLDPYRLASFGLTPDDVTSALQAQNAQVAAGQIGGVPSPDSQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               +V  +  ++ +              +    I   +    +        +       
Sbjct: 230 MLNAIVTSRSRLTNVD-------------EFKKIIVKTQTDGSKVMLQDVARVELGSESY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                    T E                  ++           
Sbjct: 277 NVVGRLNGHPGAGIAILLAPGADALKTSEIVRSYVDKAAERFPHGYRHVFVNDATAFIKL 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ + ++ T  +L+  G ++   ++
Sbjct: 337 SIEEVVKTLFEAILLVVLVMFVFLQSWRATLIPAVAVPVVLLGTFGVLAAAGFSINTLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IGL VD  I+V E +        + S   +     +   + +    +      +
Sbjct: 397 FSLVLAIGLLVDDAIVVVENVERVMEEDPDISPREATIKSMAEINTALIAIALVLSAVFL 456

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + FFGG      R F+IT+  S+ +S+F A+ +  A+   +++    +           
Sbjct: 457 PMAFFGGSTGVIYRQFSITIVASMALSVFVALVLSPALAATVLKRPDKEKRAAQGGIVGR 516

Query: 533 LIPDCIAIQFMRARF 547
                        R 
Sbjct: 517 AYHQGDRFNEWFKRM 531



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 91/250 (36%), Gaps = 5/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +  ++  +        +  L     D++  + ++     K  E  
Sbjct: 259 SKVMLQDVARVELGSESYNVVGRLNGHPGAGIAILLAPGADALKTSEIVRSYVDKAAERF 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P               +  I + +  +  + + +++ +++    W   L     + + + 
Sbjct: 319 PHGYRHVFVNDATAFIKLSIEEVVKTLFEAILLVVLVMFVFLQSWRATLIPAVAVPVVLL 378

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G  A  G   N   + +++  IG  V+D +VV + + + +      IS R+   KS+
Sbjct: 379 GTFGVLAAAGFSINTLTLFSLVLAIGLLVDDAIVVVENV-ERVMEEDPDISPREATIKSM 437

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++      LPMA +GGS       F+I +   + ++   ++ ++  +   
Sbjct: 438 AEINTALIAIALVLSAVFLPMAFFGGSTGVIYRQFSITIVASMALSVFVALVLSPALAAT 497

Query: 823 IYDWRAKNAR 832
           +     K  R
Sbjct: 498 VLKRPDKEKR 507



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 77/239 (32%), Gaps = 11/239 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +   Q  ++  +                  S    + +  +  ++  +    +  + +
Sbjct: 812  STIHWAQTPNLLTRFNGVSNFTFQGQGAPGKSSGDAMKRITELAAQVPGVSVDWSGLSYQ 871

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                     ++  G+  +++      +Y         A+  +  L L I  TL   A  G
Sbjct: 872  ERLSGGQAPILY-GLSVLVVFLCLAALYESW--SIPIAVVMVIPLGL-IGATLAVLA-RG 926

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +E ++     ++T +G S  + +++ +     +       +      +     L   + T
Sbjct: 927  LENDVFFQVGLVTTMGLSAKNAILIVEFA---VMAENDGKTPLQAAIEGARIRLRPILMT 983

Query: 776  SMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            S A    VLP+A+  G+      +    +  G+  A   ++F      + +     +  
Sbjct: 984  SFAFMFGVLPLAISTGAGAKARVAIGTAVLGGMFTATLLALFFVPLFFVLVRKLFPRKR 1042


>gi|323359955|ref|YP_004226351.1| preprotein translocase subunit SecD [Microbacterium testaceum
           StLB037]
 gi|323276326|dbj|BAJ76471.1| preprotein translocase subunit SecD [Microbacterium testaceum
           StLB037]
          Length = 568

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 119/520 (22%), Positives = 207/520 (39%), Gaps = 48/520 (9%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DEDDFVNGFLQ 71
              GLL         + L  +          L LDL+GG+ ++L+    D     +  LQ
Sbjct: 13  VLTGLLAITAVLFGLNALGVYAFKASSWTPDLALDLQGGTQIILQAQTTDGATPDSEQLQ 72

Query: 72  MYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ-GVNSKLNVD 129
                +R  +   G+G   +  +  +KI +        E    ++    Q  +   L   
Sbjct: 73  QAVSIIRQRVDASGVGETDIATEGSDKIVVQIPGEAD-EATRQRIQSSAQLQLRPVLFTG 131

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                 V              N+    + +                              
Sbjct: 132 SPATTFVGEDGNTTPYPTPDANLPSTPTASPTDGS------------------------- 166

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
                   DP+ +   L            P+N  +            +     +   VE+
Sbjct: 167 --------DPAYITPALQAQFLAYDCANPPSNPAQAPAKDPMITCGLNDGTKYILGPVEL 218

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL-----DGRVLT 304
            G  +  AT   +  T +  V++ F++ G  +F ++++   GK           DG VL+
Sbjct: 219 DGDDIADATNGQEQNTGRWAVNLVFNDQGTEKFGQISQRLYGKQAPFNQFAFVLDGSVLS 278

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           AP +N  I  G+  I+G+FT E++  LA  L+ G+LP+  N+V    V A LGS  +  G
Sbjct: 279 APSMNGIILDGRPSITGSFTQESSKALADQLKYGALPLSFNVVSSDTVSATLGSQQLQVG 338

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIAGI 420
             A + GL L+ L+ +++Y   G V   S+ +  +LT  +L +L   +    +L  +AG+
Sbjct: 339 FIAGLIGLALVALYSLIVYRALGTVIIASLGVMAVLTYVMLCILAWRMGFRLSLAGVAGL 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++ IG   DS I+  ERIR+E R  +S+  +++ G+SRA  TI+ S    ++A VVL+  
Sbjct: 399 IITIGFTADSFIVYFERIRDELRDGKSITAAVEDGWSRAKRTIYISKSINILAAVVLYIL 458

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               V+GFA T+GL+  I +   I     +M  + R +  
Sbjct: 459 ADATVKGFAFTLGLTTAIDILIFILFTHPVMQLLARTRFF 498



 Score = 97.5 bits (240), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 76/212 (35%), Gaps = 12/212 (5%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G    ++      + K   +     + +++ V   +  + ++ G +  +I    + 
Sbjct: 291 PSITGSFTQESSKALADQLKYGALPLSFNVVSSDTVSATLGSQQLQVGFIAGLIGLALVA 350

Query: 682 IYIWIRFKWYFALGAITTLILDITKTL-----GFFAL-FGIEFNLTAVAAVLTLIGYSVN 735
           +Y  I ++   ALG +    L +   L        A   G   +L  VA ++  IG++ +
Sbjct: 351 LYSLIVYR---ALGTVIIASLGVMAVLTYVMLCILAWRMGFRLSLAGVAGLIITIGFTAD 407

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V ++R+R  ++      S    ++   +        +     ++ + + +   + + 
Sbjct: 408 SFIVYFERIRDELRD---GKSITAAVEDGWSRAKRTIYISKSINILAAVVLYILADATVK 464

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            FA  +     +     I    P++  +   R
Sbjct: 465 GFAFTLGLTTAIDILIFILFTHPVMQLLARTR 496


>gi|194366975|ref|YP_002029585.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
 gi|194349779|gb|ACF52902.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
          Length = 1041

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/652 (10%), Positives = 175/652 (26%), Gaps = 38/652 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  L   P+  P               +         +   +    ++  + ++    
Sbjct: 29  FTRLTLRELPAIDPPIV---------SVSVDYTGASAAVIESRITQVLEDALAGIEGIDT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                   ++++++ F  +R  E  A+ V   +  V  ++  + +   +         I+
Sbjct: 80  INARSNNGRSQVSIEFTSNRDIEAAANDVRDAVSRVADRMPEEARPPEIAKVESDADPII 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                        +E S    R  +D+    +   Q     R    +    D  +L    
Sbjct: 140 WFNMVSS--TMDTLELSDYADRYVVDRFSSLDGVAQVRIGGRQRYAMRIWLDRDQLAARG 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            TT  +                          N  L   ++E +             K  
Sbjct: 198 LTTGDVETALRNE-------------------NVELPAGRIESTDRDFTLRVERNYIKPE 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                                  I    A                     +  +      
Sbjct: 239 DFATIPLGKGRDGYVVRMGDVAKIELASAERRAYYRSNGEPGIGLGIVKTSTANSLDVAR 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
           TA   A  +           V   N      +      T      LVL V+++ +   + 
Sbjct: 299 TARAEAERVALTLPKGTQIFVAFDNTTFIEAAVDRVYATLVEAMILVLAVIWLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ + ++     L     ++ L ++  +VL IGL VD  I+V E ++      +
Sbjct: 359 ALIPAVTVPVCLVAAFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENVQRRIDLGE 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTA 503
               +   G ++    +  +    +   + + F  G      R  A+ +  ++ +S F A
Sbjct: 419 PPLVASKRGTAQVAFAVIATTAVLVAVFLPVGFLEGNTGRLFRELAVALAAAVALSAFVA 478

Query: 504 ISIVRAMMIFIIRY-----KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           +++   M   +++       +     IN             +     R W   + ++ ++
Sbjct: 479 LTLTPMMASKLLKPHTGQAPRGLHGFINRNLERLAGAYGRVLDHHVDRTWIYLLVMVAAL 538

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            +   L     +     +      ++ + P       +  +  Q+  +   +   +K  +
Sbjct: 539 AASWGLLKLLPSELAPAEDRGSFQIMIDGPEGAGYDYTVQQVQQVEAMLAPHVGADKPIV 598

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                 PG   A   +         +     +    E+           +G+
Sbjct: 599 RANPRVPGGWGASEEMHTGRVSVFLQPWRQRSEGTPEVANELQKELDTIRGV 650



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    + G   NL +   ++ 
Sbjct: 859  LLTFAMALLVVYLVLAAQFESFIHPLTIMLTVPLGVLGALVGLWVSGGTVNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     + R+ I +S    L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDDGRTVREAIIESAMVRLRPILMTSIATVVGAVPLVV 975

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFI 823
             GG    S     I + FG+ ++   S+F+       +
Sbjct: 976  AGGPGSASRGTIGIVIIFGVTLSTFLSLFVVPAFYARL 1013



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 67/210 (31%), Gaps = 4/210 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V     +       +++       L  ++    +S+   R      +++   +P 
Sbjct: 254 VRMGDVAKIELASAERRAYYRSNGEPGIGLGIVKTSTANSLDVARTARAEAERVALTLPK 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
            T               + +    ++ + I +L  IW+    +  AL    T+ + +   
Sbjct: 314 GTQIFVAFDNTTFIEAAVDRVYATLVEAMILVLAVIWLFLGSFRAALIPAVTVPVCLVAA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 F    NL  + A++  IG  V+D +VV + +    +             +   +
Sbjct: 374 FIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENV---QRRIDLGEPPLVASKRGTAQ 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                + T+       LP+    G+    F
Sbjct: 431 VAFAVIATTAVLVAVFLPVGFLEGNTGRLF 460


>gi|324119104|gb|EGC12993.1| AcrB/AcrD/AcrF family protein [Escherichia coli E1167]
          Length = 1040

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/652 (10%), Positives = 171/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++  F++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGQGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLEERDD 635



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|253689336|ref|YP_003018526.1| acriflavin resistance protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251755914|gb|ACT13990.1| acriflavin resistance protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 1040

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/621 (11%), Positives = 161/621 (25%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGII-----GYRALPVSALPEVDYPTIQ---------VITLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F      +     V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSTQSAGGASVITLQFQLELSLDVAEQDVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D       +        +++   +        +    +  +   +I        
Sbjct: 125 SNLLPNDLPYPPTYSKVNPADPPIMT-LAVTSSAMSMTQVQDMVDNRIAQKISQVAGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +   L     T+  +       N +                    
Sbjct: 184 VSLAGGQRPAVRVRLNAPALAAYGLTSETIRTAITAANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   KT      +                 I +    +  G  
Sbjct: 236 ------------VTLSANDQMKTVDDYRKLIVAWKNGAPVRLQDVATIEQAAENIHLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L+A                +   S    
Sbjct: 284 ANRQQAIIINVQRQPGANVITTADSINKMLPALKASLPNAVEVTTLTDRTTSIRASVKDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYLFLRNAVATLIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENIARYIEKGEKPLNAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ +SILIS   ++++   M   +       K+ +    +      LI 
Sbjct: 464 IVGRLFREFAVTLAVSILISAVVSLTLTPMMCARMLSHQSLRKQNRFTRASERFFTRLID 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL---GVLANRPVDLS 592
                         + +S+      + +L    +  G        +    V A + V  S
Sbjct: 524 AYGVWLRKVLNHPWLTLSVALGTLLLTILLYIWIPKGFFPIQDNGIIQGTVQAPQTVSFS 583

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    + +    +     + 
Sbjct: 584 NMADRQQRVASIIMKDPAVES 604



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 86/270 (31%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S               + +K G  + +     ++ +    +L +      +   
Sbjct: 233 TRSVTLSANDQMKTVDDYRKLIVAWKNGAPVRLQDVATIEQAAENIHLGAWANRQQAIII 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +     +      +     +   +   +          +       +  EL+    
Sbjct: 293 NVQRQPGANVITTADSINKMLPALKASLPNAVEVTTLTDRTTSIRASVKDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 349 --LAIALVVMVIYLFLR-NAVATLIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         +   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---ARYIEKGEKPLNAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVSILISAVVSLTLTP 492



 Score = 44.3 bits (102), Expect = 0.098,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++     + +   +  A    ++ + +   ++   + I           +  +   +  +
Sbjct: 811  DQFPSTTISFNVANGYALGEAVDAITQAEQQMNLPADITTRFQGSTLAFQSALSSTVWLI 870

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + +AM I + + ++ +   +  ++TL       L    + G E ++ A+  ++ LIG 
Sbjct: 871  VAAIVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMMAGNELDVIAIIGIILLIGI 930

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D            +   D I ++        + T+MAA +S LP+ +    
Sbjct: 931  VKKNAIMMID--FALAAEREQGMKPYDAIYQACLLRFRPILMTTMAALLSALPLMLSTGV 988

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     I M  G++++   ++F    I L       +  R
Sbjct: 989  GAELRQPLGICMVGGLIMSQILTLFTTPVIYLLFDRLATRFRR 1031


>gi|227115075|ref|ZP_03828731.1| multidrug efflux system subunit MdtB [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 1040

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/621 (11%), Positives = 161/621 (25%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGII-----GYRALPVSALPEVDYPTIQ---------VITLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F      +     V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSTQSAGGASVITLQFQLELSLDVAEQDVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D       +        +++   +        +    +  +   +I        
Sbjct: 125 SNLLPNDLPYPPTYSKVNPADPPIMT-LAVTSSAMSMTQVQDMVDNRIAQKISQVAGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +   L     T+  +       N +                    
Sbjct: 184 VSLAGGQRPAVRVRLNAPALAAYGLTSESIRTAITAANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+      +                 I +    +  G  
Sbjct: 236 ------------VTLSANDQMKSVDDYRKLIVAWKNGAPVRLQDVATIEQAAENIHLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L+A                +   S    
Sbjct: 284 ANRQQAIIINVQRQPGANVITTTDSINKMLPALKASLPNSVEVTTLTDRTTSIRASVKDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYLFLRNAVATLIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENIARYIEKGEKPLNAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ +SILIS   ++++   M   +       K+ +    +      LI 
Sbjct: 464 IVGRLFREFAVTLAVSILISAVVSLTLTPMMCARMLSHQSLRKQNRFTRASERFFTRLID 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL---GVLANRPVDLS 592
                         + +S+      + +L    +  G        +    V A + V  S
Sbjct: 524 AYGVWLRKVLNHPWLTLSVALGTLLLTVLLYIWIPKGFFPIQDNGIIQGTVQAPQTVSFS 583

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    + +    +     + 
Sbjct: 584 NMADRQQRVASIIMKDPAVES 604



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+IY+++R      L     + L +  T       G   N   + A+    G+
Sbjct: 349 LAIALVVMVIYLFLR-NAVATLIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIATGF 407

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +VV + +    +         +   K   E     +  + +    ++P+   G  
Sbjct: 408 VVDDAIVVIENI---ARYIEKGEKPLNAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDI 464

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FA+ +A  I+++A  S+ +  
Sbjct: 465 VGRLFREFAVTLAVSILISAVVSLTLTP 492



 Score = 45.1 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++     + +   D  A    ++ + +   ++   + I           +  +   +  +
Sbjct: 811  DQFPSTTISFNVADGYALGEAVDAITQAEQQMNLPADITTRFQGSTLAFQSALSSTVWLI 870

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + +AM I + + ++ +   +  ++TL       L    + G E ++ A+  ++ LIG 
Sbjct: 871  VAAIVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMMAGNELDVIAIIGIILLIGI 930

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D            +   D I ++        + T+MAA +S LP+ +    
Sbjct: 931  VKKNAIMMID--FALAAEREQGMKPYDAIYQACLLRFRPILMTTMAALLSALPLMLSTGV 988

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     I M  G++++   ++F    I L       +  R
Sbjct: 989  GAELRQPLGICMVGGLIMSQILTLFTTPVIYLLFDRLAMRFRR 1031


>gi|225626804|ref|ZP_03784843.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella ceti str. Cudo]
 gi|254707979|ref|ZP_05169807.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella pinnipedialis
           M163/99/10]
 gi|254709441|ref|ZP_05171252.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella pinnipedialis
           B2/94]
 gi|254713140|ref|ZP_05174951.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella ceti M644/93/1]
 gi|254716506|ref|ZP_05178317.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella ceti M13/05/1]
 gi|256030935|ref|ZP_05444549.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella pinnipedialis
           M292/94/1]
 gi|256158982|ref|ZP_05456819.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella ceti M490/95/1]
 gi|256254340|ref|ZP_05459876.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella ceti B1/94]
 gi|260168070|ref|ZP_05754881.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella sp. F5/99]
 gi|261218300|ref|ZP_05932581.1| acriflavin resistance protein [Brucella ceti M13/05/1]
 gi|261221499|ref|ZP_05935780.1| acriflavin resistance protein [Brucella ceti B1/94]
 gi|261315470|ref|ZP_05954667.1| acriflavin resistance protein [Brucella pinnipedialis M163/99/10]
 gi|261316963|ref|ZP_05956160.1| acriflavin resistance protein [Brucella pinnipedialis B2/94]
 gi|261320851|ref|ZP_05960048.1| acriflavin resistance protein [Brucella ceti M644/93/1]
 gi|261757519|ref|ZP_06001228.1| acriflavin resistance protein [Brucella sp. F5/99]
 gi|265987999|ref|ZP_06100556.1| acriflavin resistance protein [Brucella pinnipedialis M292/94/1]
 gi|265997461|ref|ZP_06110018.1| acriflavin resistance protein [Brucella ceti M490/95/1]
 gi|225618461|gb|EEH15504.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella ceti str. Cudo]
 gi|260920083|gb|EEX86736.1| acriflavin resistance protein [Brucella ceti B1/94]
 gi|260923389|gb|EEX89957.1| acriflavin resistance protein [Brucella ceti M13/05/1]
 gi|261293541|gb|EEX97037.1| acriflavin resistance protein [Brucella ceti M644/93/1]
 gi|261296186|gb|EEX99682.1| acriflavin resistance protein [Brucella pinnipedialis B2/94]
 gi|261304496|gb|EEY07993.1| acriflavin resistance protein [Brucella pinnipedialis M163/99/10]
 gi|261737503|gb|EEY25499.1| acriflavin resistance protein [Brucella sp. F5/99]
 gi|262551929|gb|EEZ07919.1| acriflavin resistance protein [Brucella ceti M490/95/1]
 gi|264660196|gb|EEZ30457.1| acriflavin resistance protein [Brucella pinnipedialis M292/94/1]
          Length = 1043

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 158/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++ + +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   ++     +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFREFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    +  G+ +A  +++++  P+   +     K  
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYV-TPVAYLLLGRFTKPK 1021


>gi|187479512|ref|YP_787537.1| multidrug efflux system transmembrane protein [Bordetella avium
           197N]
 gi|115424099|emb|CAJ50652.1| multidrug efflux system transmembrane protein [Bordetella avium
           197N]
          Length = 1028

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/530 (10%), Positives = 142/530 (26%), Gaps = 38/530 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLFMVAILIAGLIA-----YRLLPVSALPEVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F      +    +V   +   
Sbjct: 56  PDVMTSLVTSPLERQFGKMPGLNQMSSTSSGGASVITLQFNLELPLDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + VL+   I        +    +  +   ++        
Sbjct: 116 SNLLPNDLPVPPVYNKVNPADAAVLT-LAITSPTMPLPQVRDLVDTRMAQKLSQVPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +    V  N ++            +      
Sbjct: 175 VSVAGGQRPAVRVQVNPQALAAAGLGLSDLRTAVVGANVNQPKGNLDGPLRATTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                      D+                   +          
Sbjct: 235 LKSPAD--------------------YNDLIIAYKNHAPLRLSDVAQAVQGAEDTRQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    +   LRA         V          S    
Sbjct: 275 VGDKPAILLNVQRQPGANVIDVVDRIRDMLPQLRAALPATLDLSVVSDRTQTIRDSVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V ++ +      L+    + L++I T  ++ L G ++   ++  + +
Sbjct: 335 QHEMLMAVALVVMVTYVFLRSVTATLIPSVVVPLSLIGTFGIMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +S   +   G S+   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMIENIARHIEEGESPMQAALKGASQIGFTLISLTFSLIAVLIPLLFMQD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             G   R FA+T+ ++ILIS+  ++++   M   +++ +  +        
Sbjct: 455 VVGRLFREFAVTLAVAILISLVVSLTLTPMMCARLLKPESAQRHGRFHQW 504



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++ + M+ Y+++R      L     + L +  T G   L G   N   + A+    G+
Sbjct: 340 MAVALVVMVTYVFLR-SVTATLIPSVVVPLSLIGTFGIMYLAGFSINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +      S      K  ++     +  + +    ++P+      
Sbjct: 399 VVDDAIVMIENI---ARHIEEGESPMQAALKGASQIGFTLISLTFSLIAVLIPLLFMQDV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FA+ +A  I+++   S+ +  
Sbjct: 456 VGRLFREFAVTLAVAILISLVVSLTLTP 483



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  +V + +      + +  +  +K+   +I   ++I+          +  +   +  +
Sbjct: 803  DQFPMVTVSFNLAPGASLSSAVAAIKQAEHDIGMPASIETRFQGAALAFQNSLSSTLWLI 862

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + I M I + + ++ +   +  ++TL       L    + G + ++  +  ++ LIG 
Sbjct: 863  LAAIITMYIVLGVLYESFIHPITILSTLPSAGVGALLALLISGTDLDMIGIIGIILLIGI 922

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D   +        +S +  I ++        + T++AA    LP+ +    
Sbjct: 923  VKKNAIMMIDFALE--AERKQGMSAQQAIHQAALLRFRPILMTTLAALFGALPLMLSSGT 980

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G  +     + M  G++V+   ++F    I L       +  
Sbjct: 981  GAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLMFDRLAHRRR 1022


>gi|296103740|ref|YP_003613886.1| multidrug efflux system subunit MdtC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058199|gb|ADF62937.1| multidrug efflux system subunit MdtC [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 1025

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/620 (11%), Positives = 168/620 (27%), Gaps = 44/620 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISLAITLCGVL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F+  R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFSFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I        
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGQLYDFASTQLAQTISQINGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  +          R        
Sbjct: 175 VSVGGSSLPAVRVGLNPQALFNQGVSLDDVRSAISSANVRRPQGAIESNSHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLSDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+ +       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIETVNSIRARLPELQKTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVGLVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENISRHLEAGVKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++          + K      L+    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLIISLTLTPMMCGWMLKRSKPHSQPRRKGFGRFLLAMQEG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGLVLVGTIALNVWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDG 613
           +R  L+         +  D 
Sbjct: 575 MRGKLQDFMKIIREDKAVDN 594



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 95/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   E + + +T++   ST++ +     ++ +E +   ++ ++ +   
Sbjct: 803  TISFNLPTGSSLSEASEAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    LFG  F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGVLYESYVHPLTILSTLPSAGVGALLALELFGAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++  + I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRNGN--LTPEEAIFQACLLRFRPIMMTTLAALFGALPLVISGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 7/216 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       VI   
Sbjct: 284 MIRKLPEANIIETVNSIRARLPELQKTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVG 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---SRHLEAGVKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FA+ ++  I ++   S+    P++      R+K 
Sbjct: 461 REFAVTLSVAIGISLIISL-TLTPMMCGWMLKRSKP 495


>gi|282853885|ref|ZP_06263222.1| protein-export membrane protein SecD [Propionibacterium acnes J139]
 gi|282583338|gb|EFB88718.1| protein-export membrane protein SecD [Propionibacterium acnes J139]
          Length = 566

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 118/535 (22%), Positives = 206/535 (38%), Gaps = 48/535 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FV 66
           L   +  I ++  L   +            P     LGLDLRGG+ + L    +D     
Sbjct: 14  LVIFLVIIIVMYVLMGVMRT--------WSP----KLGLDLRGGTSVTLTAKTEDGKAPS 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTLFLQGV 122
              L+     +   +   G+G  S++ + ++ I +S  +       E +     L  + V
Sbjct: 62  ATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQLGFRMV 121

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLS--QNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            ++  V  K            S + +   +        A   S         Q    +  
Sbjct: 122 YAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASATPDASASSKGGTTSSASQYNEKDPQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                        P  +D                       S            D +   
Sbjct: 182 SAAKMVKAAEEWKPTPEDQKAFEDY------------KCAKSVDSPDDKSLVTCDRERTM 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +   V I+G  +  A +         VV++ F+ +G   F + T     K        
Sbjct: 230 KYLLSPVAITGTQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSPQNQFA 289

Query: 301 RVLTAPVINQAIP-----------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
            VL   VI+                G+AQISG+FT ++A  LA +L+ G+LP+  +I   
Sbjct: 290 VVLDGKVISSPQLNGDTGASCPINGGEAQISGHFTQDSAADLANVLKYGALPLSFDISSV 349

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL- 408
            N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A + LL 
Sbjct: 350 DNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAAMVLLG 409

Query: 409 ---GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
              G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A  TI  
Sbjct: 410 EAVGFTLSLAGIAGAIVAIGVTTDSFIVYFERIRDEIREGRTLRTALQTGWAKARGTILM 469

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 470 ADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFW 524



 Score = 95.9 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 343 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 401

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 402 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTTDSFIVYFERIRDEIRE---GRTLRTALQT 458

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 459 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 518

Query: 824 YDWR 827
              R
Sbjct: 519 GRTR 522


>gi|255011937|ref|ZP_05284063.1| putative multidrug resistance/siderophore transport related,
           membrane protein [Bacteroides fragilis 3_1_12]
 gi|313149773|ref|ZP_07811966.1| multidrug resistance protein [Bacteroides fragilis 3_1_12]
 gi|313138540|gb|EFR55900.1| multidrug resistance protein [Bacteroides fragilis 3_1_12]
          Length = 1069

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/694 (10%), Positives = 181/694 (26%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFTLPVEQYPDIAPPTIM---------VSTSYFGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S        IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSSATNAGTVSITVYFKQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           +  I      +I       
Sbjct: 115 ATGQLPSEVNQVGVTTSKRQTSILQMFSLHSPDDSYDEAFLANYISINLKPEILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        L     P  + Q     + +S      N       FG            
Sbjct: 175 DMMIMG-GDYSLRIWMKPDVMAQYRLIPSDVSAVLAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++                   +    +       +         I           
Sbjct: 234 YKGRRI----------------TPEEFGEIVIRSTDDGQVLKLKDIATIELGQESYAYSG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +               R              +      S   
Sbjct: 278 TTDGHNGISCMLFQTAGSNATEVNNRINDFLEEARKDLPRGVELTQLMSSNDFLYASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I ++++ T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLLEAILLVILVVYIFLQDIRSTLIPLVGIIVSLVGTFAFMAMAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 SGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALLLKPYINEDGTQKQNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        I + F++ R+   G+ +      + L+ T   +   D   G+    +
Sbjct: 518 NAAFDVVIDRYKGIVLFFIKHRWLTGGLLVASIALLVVLMNTTKTSLVPDEDQGVVFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +            +       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLRTTDEVMKRIEQRMEQIPQVEHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q+        + ++    +  +    I
Sbjct: 638 PGKEDNVQSVIGQVYGRTGDIKDATVFAISPGMI 671



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 95/280 (33%), Gaps = 9/280 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S   +               I  +   ++ + +     +  ++         +    +  
Sbjct: 219 SFGENSDETYQYTMKYKGRRITPEEFGEIVIRSTDDGQVLKLKDIATIELGQESYAYSGT 278

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKG 669
            + +  +            T V   +   + E                 +  L   I + 
Sbjct: 279 TDGHNGISCMLFQTAGSNATEVNNRINDFLEEARKDLPRGVELTQLMSSNDFLYASIHEV 338

Query: 670 IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +  ++ + + +++ ++I        L  +  +I+ +  T  F A+ G   NL  + A++ 
Sbjct: 339 VKTLLEAILLVILVVYIFLQDIRSTLIPLVGIIVSLVGTFAFMAMAGFSINLITLFALVL 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           +IG  V+D +VV + ++    +   S     +   ++       + +S+      +P++ 
Sbjct: 399 VIGTVVDDAIVVVEAVQARFDVGYKSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSF 456

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             G+       F + MA  + ++A +++ ++  +   +  
Sbjct: 457 MSGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALLLK 496



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 77/264 (29%), Gaps = 18/264 (6%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G   + +       LS   +   +     +S  N                   A   V E
Sbjct: 786  GNTFVRMSNGEMAPLSQFVTLTRTYGAESLSRFNMYNSIAVNAMPADGYSTGDAIRAVQE 845

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFA 693
                 + +             G     E  + G   +I     ++IY+    +   +   
Sbjct: 846  TASTALPKGYGY-------DYGGITREETEQSGTTAIIFGICFLMIYLILSALYESFLIP 898

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               + ++   +  +  F  LFG+E N+     ++ LIG      +++     +       
Sbjct: 899  FAVLLSVPCGLMGSFLFARLFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERRK 954

Query: 754  -SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              +        +    L   + T++     + P+ V    G +   S       G+V+  
Sbjct: 955  AGMGLIASALSAAKARLRPILMTALTMIFGLFPLMVASGVGANGNRSLGTGAVGGMVIGT 1014

Query: 810  SSSIFIAAPILLFIYDWRAKNARI 833
             + +FI   + +     + +   I
Sbjct: 1015 LALLFIVPSLFIAFQWLQERIRPI 1038


>gi|29348095|ref|NP_811598.1| putative cation efflux transporter [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253573057|ref|ZP_04850450.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298386220|ref|ZP_06995777.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 1_1_14]
 gi|29339998|gb|AAO77792.1| putative cation efflux transporter [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251837349|gb|EES65447.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|298261448|gb|EFI04315.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 1_1_14]
          Length = 1052

 Score =  159 bits (402), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/569 (12%), Positives = 162/569 (28%), Gaps = 41/569 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++           +  + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANE---SQAALYKILDDRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     +   +S      N +  G  F +           
Sbjct: 172 TVSISGAPQREIQVYCDPNKLEAYNLSIETISSIIGAENKNIPGGNFDI----------- 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G          +    + + DI          F      I   +       
Sbjct: 221 ---------GSETYALRVEGEFDDSRQLADIVVGTHNGANVFLRDVARIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +              L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISRKVEEALPRLQKNLPSDVKLGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LAETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAITGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G +    +     M   + +S   A+S+   +    +   K+   +     +      D 
Sbjct: 452 GMSGVLFKQLGWMMCAIMFVSTVAALSLTPMLCSQLLRLQKRPSKMFKLFFTPIEKALDA 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT 566
           +   + +   W V    +  +  I     
Sbjct: 512 LDTGYAKMLNWAVRHRPVVIVGCIAFFVV 540



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 91/245 (37%), Gaps = 7/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   +V  +    +SV  +R +E    ++ + +P     
Sbjct: 256 DVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISRKVEEALPRLQKNLPSDVKL 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +         I      V+ + + ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GVIVDTSDNILNTIDSLAETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AITGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++       P+ +     G +       M   + V+  +++ +   +   +   + 
Sbjct: 433 VIASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFVSTVAALSLTPMLCSQLLRLQK 492

Query: 829 KNARI 833
           + +++
Sbjct: 493 RPSKM 497



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 84/263 (31%), Gaps = 7/263 (2%)

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                   +  +         VR       +   +    + +    +              
Sbjct: 770  YRTSLESIENILIYNAKGESVRVKDVGKVVERFAPPTIERKDRERIVTVSAVISGAPLGD 829

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYF 692
            V+    K I ++     I        +  ++  R      I+  I + I +  +F+   +
Sbjct: 830  VVAAGNKLIDKMDIPGEITIQISGSYEDQQDSFRDLGTLGILIVILVFIVMAAQFESLTY 889

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + +L    +  L      G   ++ ++   + LIG  V + +V+ D +        
Sbjct: 890  PFIIMFSLPFAFSGVLMALFFTGSTLSVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRE 946

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAA 809
              ++  + +  S    L   + T+    + ++PMA+ GG    +    AI +  G+ V+ 
Sbjct: 947  RGMAVINSVVTSGKSRLRPVLMTTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTVST 1006

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
              ++ +   +         KN R
Sbjct: 1007 VLTLVLIPTLYCVFAGTGIKNRR 1029


>gi|309791029|ref|ZP_07685565.1| protein-export membrane protein SecF [Oscillochloris trichoides
           DG6]
 gi|308226884|gb|EFO80576.1| protein-export membrane protein SecF [Oscillochloris trichoides
           DG6]
          Length = 332

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/311 (24%), Positives = 144/311 (46%), Gaps = 27/311 (8%)

Query: 544 RARFWGVGISILFSICSICLLFTHGL----------NYGIDFKGGIQLGVLANRPVDLSV 593
           R R+W   +S++  +  +  L  H L          +  IDF GG    V         V
Sbjct: 6   RRRYWWFALSLVLILPGLYFLLLHPLVTTGRFGVGLHPSIDFSGGSLWEVRFLEKAPTDV 65

Query: 594 VRSNLESLQ--------IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
               +  +         +  +S    +G+    V ++     S+     +E V   +   
Sbjct: 66  TTDAVAQVFAAQGFPSALVQLSPVEVEGKTIAGVLVRTAALSSIDPNSQIEAVTTALQTA 125

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTL 700
               + +  E VGP +S+E  R  I+ V+ +++ +L+Y+   F+       + + AI  +
Sbjct: 126 FGPVSRERLESVGPTVSQESTRSAIIAVLGASLVILLYLTWAFRKAPHPLRYGVCAILAM 185

Query: 701 ILDITKTLGFFAL----FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + D+   LG  A+    FG+E +   + A+LT++ +SV+D +VV+DR+R+N+    +S  
Sbjct: 186 VHDVVLVLGVAAILGTFFGLEVDALFLTALLTILSFSVHDTIVVFDRIRENLINRRSSEV 245

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           F D+++ SI +TL RS+ T +    ++  + ++GG  I +F   +  G+++   SSIF A
Sbjct: 246 FDDIVNHSIVQTLPRSINTQLTTLFTLTALLLFGGESIRNFVAILLIGLIIGTYSSIFNA 305

Query: 817 APILLFIYDWR 827
           A +L+      
Sbjct: 306 AQLLVVWEHRE 316


>gi|198276792|ref|ZP_03209323.1| hypothetical protein BACPLE_02995 [Bacteroides plebeius DSM 17135]
 gi|198270317|gb|EDY94587.1| hypothetical protein BACPLE_02995 [Bacteroides plebeius DSM 17135]
          Length = 1034

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/635 (10%), Positives = 163/635 (25%), Gaps = 44/635 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPIDQYPQITPPV-------------VKISASYPGASAVTVSQAVATPIEQELNGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMESSSSNSGGFSATVTFDISADPDLAAVEIQNRIKLAESRLPAEVIQNGISVEKQAPSQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++      D      I  S        D +       +          +    DP++L  
Sbjct: 138 LMTLCLTSDDPKFDEIYLSNFATLNVQDLLRRIPGVGRISNIGSRYYAMQIWADPAKLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T   +       N      + G + +   D                +          
Sbjct: 198 FGLTVQDLQNALKDQNRESAAGVLGQQPVSGVDIT--------------VPITAQGRLSS 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +    +       +                +    
Sbjct: 244 ASQFEEIVLRANPDGSLVRLRDVARVSLEASSYSTESGINGGNAAILGIYMLPGANAMEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            +        +                      S      T      LV+IV+F+ +   
Sbjct: 304 AQNVKEAMKEISKSFPEGMEYNFPFDMTTYISQSIHEVYKTLFEALVLVIIVVFLSLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   ++ +++I T   + + G +L + ++ G+VL IG+ VD  I+V E +     +
Sbjct: 364 RATLIPVVAVPISLIGTFGFMLIFGFSLNMLTLLGLVLAIGIVVDDAIVVVENVERIMEE 423

Query: 445 NQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISM 500
            + S + +           I  +++      V + F     G   R F IT+ +S+L+S 
Sbjct: 424 EKLSPYEATKKAMEGLVGAIIATSLVLAAVFVPVSFLSGITGQLYRQFTITIVVSVLLST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI--------PDCIAIQFMRARFWGVGI 552
             A+++   M   I++                             I       R    G 
Sbjct: 484 VVALTLSPVMCSLILKPVDPNKPKNKVFRLINEWLAIGNNKYIIYIKHVVKHPRRIMAGF 543

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            ++     +           I+ +G   + +       L   R   +      +     +
Sbjct: 544 GMVLVFIYVFHRLVPTSFLPIEDQGYFTVELELPETATLERTRIITDRAIDFIMKDPAVE 603

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +N                  + + + K  +   
Sbjct: 604 YVQNVTGSSPRVGTSQARSQLTVILKEWKERDNTT 638



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 100/294 (34%), Gaps = 7/294 (2%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR-SNLES 600
            F   + +   + +        +   +        +    +G+   +  D  ++  + L +
Sbjct: 741  FSTMKAYTGSVYVNDFNMFNRIYRVYIQAEAPYRQQRDNIGLFFVKGSDGDMIPLTALGT 800

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                                ++    +  +  +V+E +++   E +P +       +  +
Sbjct: 801  TDYTTGPGSIRRFNMFNTAVIRGTTANGASSGQVMETLEQIAREKLPDNIGVEWSGLSYQ 860

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
              +   + G++  ++     L    +   W   +  + +L + +        L G+E + 
Sbjct: 861  EKKAGGQTGLILALVFLFVFLFLAALYESWTVPIAVLISLPVAVLGAYAGITLCGLENDT 920

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 ++ LIG +  + +++ +  +  +          +    + +      + TS+A  
Sbjct: 921  YFQIGLVMLIGLAAKNAILIVEFAKDEV---DKGRDIVESALHAASLRFRPILMTSLAFI 977

Query: 781  ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +LPM +    G +   +    + FG++VA +  I +     + IY    K  
Sbjct: 978  LGMLPMVIASGPGSASRQAIGTGVFFGMIVAVTVGILLVPFFFVMIYKATHKIK 1031



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 76/207 (36%), Gaps = 9/207 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V                  G    L        +++   + ++   K+I++  P 
Sbjct: 261 VRLRDVARVSLEASSYSTESGINGGNAAILGIYMLPGANAMEVAQNVKEAMKEISKSFPE 320

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
               N          + I +    +  + + ++I +++    W   L  +  + + +  T
Sbjct: 321 GMEYNFPFDMTTYISQSIHEVYKTLFEALVLVIIVVFLSLQSWRATLIPVVAVPISLIGT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKS 764
            GF  +FG   N+  +  ++  IG  V+D +VV    +R+ +        +S  +   K+
Sbjct: 381 FGFMLIFGFSLNMLTLLGLVLAIGIVVDDAIVVVENVERIMEE-----EKLSPYEATKKA 435

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGG 791
           +   +G  + TS+      +P++   G
Sbjct: 436 MEGLVGAIIATSLVLAAVFVPVSFLSG 462


>gi|116070725|ref|ZP_01467994.1| SecF protein [Synechococcus sp. BL107]
 gi|116066130|gb|EAU71887.1| SecF protein [Synechococcus sp. BL107]
          Length = 328

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/177 (31%), Positives = 102/177 (57%), Gaps = 5/177 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           Q+ + +GP + R+L++  +V ++++   + +YI  R+   +A  A+  L  D+    G F
Sbjct: 149 QSVDTIGPSLGRQLLQSSLVSLLVAFAGIAVYISFRYDRRYAFLALVALAHDVVIVCGIF 208

Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A  G+    E +     A+LT+ GYSVND VVV+DR+R+  +   + +  +  +D++++ 
Sbjct: 209 AWLGLFFQLEVDSLFAVALLTIAGYSVNDTVVVFDRIRERTQQG-SDLPLKLQVDQAVSA 267

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           TL R++YTS    + +L +  +GGS +  FAI +A G+VV + SSI +A  +L    
Sbjct: 268 TLTRTLYTSGTTLMPLLALVFFGGSTLYWFAIALALGVVVGSWSSIALAPSLLTLWQ 324


>gi|62289274|ref|YP_221067.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82699204|ref|YP_413778.1| acriflavin resistance protein [Brucella melitensis biovar Abortus
           2308]
 gi|189023527|ref|YP_001934295.1| Acriflavin resistance protein [Brucella abortus S19]
 gi|237814764|ref|ZP_04593762.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella abortus str. 2308
           A]
 gi|254696715|ref|ZP_05158543.1| Acriflavin resistance protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|254729625|ref|ZP_05188203.1| Acriflavin resistance protein [Brucella abortus bv. 4 str. 292]
 gi|260545972|ref|ZP_05821713.1| acriflavin resistance protein [Brucella abortus NCTC 8038]
 gi|260757283|ref|ZP_05869631.1| acriflavin resistance protein [Brucella abortus bv. 4 str. 292]
 gi|260761105|ref|ZP_05873448.1| acriflavin resistance protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|62195406|gb|AAX73706.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82615305|emb|CAJ10263.1| Acriflavin resistance protein [Brucella melitensis biovar Abortus
           2308]
 gi|189019099|gb|ACD71821.1| Acriflavin resistance protein [Brucella abortus S19]
 gi|237789601|gb|EEP63811.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella abortus str. 2308
           A]
 gi|260097379|gb|EEW81254.1| acriflavin resistance protein [Brucella abortus NCTC 8038]
 gi|260667601|gb|EEX54541.1| acriflavin resistance protein [Brucella abortus bv. 4 str. 292]
 gi|260671537|gb|EEX58358.1| acriflavin resistance protein [Brucella abortus bv. 2 str. 86/8/59]
          Length = 1043

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 157/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG    F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFHEFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 73/220 (33%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++ + +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   +      +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFHEFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    +  G+ +A  +++++  P+   +     K  
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYV-TPVAYLLLGRFTKPK 1021


>gi|110806044|ref|YP_689564.1| hypothetical protein SFV_2135 [Shigella flexneri 5 str. 8401]
 gi|110615592|gb|ABF04259.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
 gi|332756917|gb|EGJ87262.1| multidrug resistance protein mdtB [Shigella flexneri 2747-71]
 gi|333002490|gb|EGK22052.1| multidrug resistance protein mdtB [Shigella flexneri K-218]
          Length = 852

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 168/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +        +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLNVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|325280867|ref|YP_004253409.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Odoribacter splanchnicus DSM 20712]
 gi|324312676|gb|ADY33229.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Odoribacter splanchnicus DSM 20712]
          Length = 1038

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/668 (11%), Positives = 183/668 (27%), Gaps = 47/668 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I  +G +      L    +D++P   P               + +    
Sbjct: 9   RPIFSAVLSILIVVVGCI-----GLYLLPVDQYPQITPPM-------------VKISASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +       +   L    G+         +    I ++F  S   E  A ++  
Sbjct: 51  PGASAQTVSQAVATPIEQELNGTPGMLYMESSSSNSGGLSINVTFDISANPELSAVEIQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   S+L  +  +N +    +    ++      D      I  S       +D +   
Sbjct: 111 RVKLAESRLPAEVVQNGISVEKQSSNQLMTLTLTSDDPRFDEIYLSNFATINVLDILRRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +     P R+     T   +       N        G + +   D
Sbjct: 171 PGVGRVSNIGSRYYGMCIWVMPDRMANFGLTVKDLQDALKDQNRESAAGELGKQPISGQD 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                           +   T       ++    +                 +    +  
Sbjct: 231 IT--------------IPITTQGRLSTVNEFEEIVVRANPDGSIVRLRDVARVSLEASSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +              +           +          
Sbjct: 277 STESGMNGKNAAVLGIYTLPGANAVEVAGQVRETMKEISKNFPEGLDYEIPFDITSYISE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  LV   ++ +++I T  ++ +LG +L L ++
Sbjct: 337 SIHEVYKTLFEALLLVVLVVFLSLQNWRASLVPLIAVPISLIGTFGVMLVLGFSLNLLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERI-REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L IG+ VD  I+V E +     ++  S + +           +  +++      + 
Sbjct: 397 LGLILSIGIVVDDAIVVVEAVGSYMEKEGLSPYEATKKAMRGLTGALIATSLVLAAVFIP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R FAIT+ +S+LIS   A+++  AM   ++R        I  +   +L
Sbjct: 457 VSFLGGITGLLYRQFAITIVVSVLISTVVALTLSPAMCALLLRPSAPSKNRIFGMINRWL 516

Query: 534 IPDCIAIQ------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                             R    G  ++     +      G     + +G  ++ +    
Sbjct: 517 ATGNRKYVGIIGKAITNPRRILAGFGMVLVFIFVLNRVVPGSFMPEEDQGYFKVELELPE 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L   R   +       +       +N          +       + +   +  +   
Sbjct: 577 GATLERTRLVTDRAVEFLKAHPAVGYVQNVTGSSPRVGTNQARSELTVILKSWEKRKGNG 636

Query: 648 LSTIQNTE 655
           +   Q  E
Sbjct: 637 MEIDQVME 644



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 689  KWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  + +L +  +   LG    FG+E ++     ++TLIG +  + +++ +  +  
Sbjct: 889  SWLVPVAVLLSLPVAALGAYLGILG-FGLENDIYFQIGLVTLIGLAAKNAILIVEFAKME 947

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +      +        +        + TS+A  + +LP+ +    G +   S    + FG
Sbjct: 948  V---DKGVDVVVAAKNAAMLRFRPILMTSLAFVLGMLPLVMASGPGSASRHSIGTGVFFG 1004

Query: 805  IVVAASSSIFIAAPILLFIYDWRAK 829
            ++ A +  I +     + +Y ++ K
Sbjct: 1005 MIAAITIGIVLVPFFFVMVYKFKEK 1029



 Score = 40.1 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 90/276 (32%), Gaps = 9/276 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  +               ++ V AN    +  +R                     
Sbjct: 226 ISGQDITIPITTQGRLSTVNEFEEIVVRANPDGSIVRLRDVARVSLEASSYSTESGMNGK 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGV 673
               L            V   V++ + EI           +   I+  +          +
Sbjct: 286 NAAVLGIYTLPGANAVEVAGQVRETMKEISKNFPEGLDYEIPFDITSYISESIHEVYKTL 345

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + + +++ +++  + W  +L  +  + + +  T G   + G   NL  +  ++  IG 
Sbjct: 346 FEALLLVVLVVFLSLQNWRASLVPLIAVPISLIGTFGVMLVLGFSLNLLTLLGLILSIGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +   M+     +S  +   K++    G  + TS+      +P++  GG 
Sbjct: 406 VVDDAIVVVEAVGSYMEKE--GLSPYEATKKAMRGLTGALIATSLVLAAVFIPVSFLGGI 463

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  FAI +   ++++   ++ ++  +   +  
Sbjct: 464 TGLLYRQFAITIVVSVLISTVVALTLSPAMCALLLR 499


>gi|254525260|ref|ZP_05137315.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
 gi|219722851|gb|EED41376.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
          Length = 1041

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 52/460 (11%), Positives = 119/460 (25%), Gaps = 30/460 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  L   P+  P               +         +   +    ++  + ++    
Sbjct: 29  FTRLTLRELPAIDPPIV---------SVSVDYTGASAAVIESRITQVLEDALAGIEGIDT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                   ++++++ F  +R  E  A+ V   +  V  ++  + +   +         I+
Sbjct: 80  INARSTNGRSQVSIEFTSNRDIEAAANDVRDAVSRVADRMPEEARPPEIAKVESDADPII 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                        +E S    R  +D+    +   Q     R    +    D  +L    
Sbjct: 140 WFNMVSS--TMDTLELSDYADRYVVDRFSSLDGVAQVRIGGRQRYAMRIWLDRDQLAARG 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            TT  +                          N  L   ++E +             K  
Sbjct: 198 LTTGDVETALRNE-------------------NVELPAGRIESTDRDFTLRVERNYIKPE 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                                  I    A                     +  +      
Sbjct: 239 DFATIPLGKGRDGYVVRMGDVAKIELASAERRAYYRSNGEPGIGLGIVKTSTANSLDVAR 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A   A  +           V   N      +      T      LVL V+++ +   + 
Sbjct: 299 VARAEAERVALTLPKGTQIFVAFDNTTFIEAAVDRVYATLVEAMILVLAVIWLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ + ++     L     ++ L ++  +VL IGL VD  I+V E ++      +
Sbjct: 359 ALIPAVTVPVCLVAAFIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENVQRRIDLGE 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
               +   G ++    +  +    +   + + F  G   R
Sbjct: 419 PPLVASKRGTAQVAFAVIATTAVLVAVFLPVGFLEGNTGR 458



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 69/158 (43%), Gaps = 7/158 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    + G   NL +   ++ 
Sbjct: 859  LLTFAMALLVVYLVLAAQFESFIHPLTIMLTVPLGVLGALVGLWVSGGTVNLFSQIGIVM 918

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G +  + +++ +      +L     + R+ I +S    L   + TS+A  +  +P+ V
Sbjct: 919  LVGLAAKNGILIVEFAN---QLRDDGRTVREAIIESAMVRLRPILMTSIATVVGAVPLVV 975

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFI 823
             GG    S     I + FG+ ++   S+F+       +
Sbjct: 976  AGGPGSASRGTIGIVIIFGVTLSTFLSLFVVPAFYARL 1013



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 68/210 (32%), Gaps = 4/210 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V     +       +++       L  ++    +S+   RV     +++   +P 
Sbjct: 254 VRMGDVAKIELASAERRAYYRSNGEPGIGLGIVKTSTANSLDVARVARAEAERVALTLPK 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
            T               + +    ++ + I +L  IW+    +  AL    T+ + +   
Sbjct: 314 GTQIFVAFDNTTFIEAAVDRVYATLVEAMILVLAVIWLFLGSFRAALIPAVTVPVCLVAA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 F    NL  + A++  IG  V+D +VV + +    +             +   +
Sbjct: 374 FIALYAFDFSINLLTLLALVLCIGLVVDDAIVVVENV---QRRIDLGEPPLVASKRGTAQ 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                + T+       LP+    G+    F
Sbjct: 431 VAFAVIATTAVLVAVFLPVGFLEGNTGRLF 460


>gi|309702399|emb|CBJ01721.1| multidrug resistance protein [Escherichia coli ETEC H10407]
          Length = 1040

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/652 (10%), Positives = 171/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++  F++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|332798296|ref|YP_004459795.1| acriflavin resistance protein [Tepidanaerobacter sp. Re1]
 gi|332696031|gb|AEE90488.1| acriflavin resistance protein [Tepidanaerobacter sp. Re1]
          Length = 1051

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/669 (10%), Positives = 183/669 (27%), Gaps = 60/669 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++ +++  +G++        +  +D  P               G         
Sbjct: 9   KRPITMLMIIAIVLVLGIIS-----FSRLGIDLLPDFSLPV---------GVVITQYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + L      +    +  + + + F      +  A  +   +  
Sbjct: 55  SSQEVESMITKPVEQTLATLSNVKNIISRSSEGSSMVMVEFNWGTNMDVAAQDMREKVDL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L    +  ++V      + ++         I   ++          D++   E   
Sbjct: 115 IKGFLPSGSQAPMVVKFDPTMMPMMQIALYGGDNI---VQLKNIAEDTISDRLLRIEGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  Q+  E DP RL     + ++++      N +  G        R +   + 
Sbjct: 172 SVDILGGLERQITIEVDPDRLASYGLSMSQIASKLQAENINLPGGNVNQGKKRYTLRTEA 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  EI  + +                                   +      +    
Sbjct: 232 EFKDVEEIENLPIPLPQ--------------------GGSVLLKNIAKVEDTHKDISTIT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     +        L++                    S   
Sbjct: 272 RYNDKPCISLSVQKQSGYNTVQVAKKVKAEMTKLQSEIPVDIGYDAILDQSDYIEMSIDN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K    +   + +IV+++ + + +  L+   SI +++I T  L+     TL + S+ G+ 
Sbjct: 332 VKSNAVMGGIIAVIVIYLFLQHLRSTLIIGISIPVSIIATFILIYFNNFTLNMLSLGGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LG+G+ VD++I+V + I    +  +    +   G +     I  S +T +   + + F  
Sbjct: 392 LGVGMLVDNSIVVLDNIFSHRQAGEEPVAAAISGTNEVALAITASTLTTVAVFLPIVFVQ 451

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------------------- 519
           G         A+T+  S+L S+  A+++V  +   ++                       
Sbjct: 452 GITAQLFNELALTVTFSLLSSLLVALTVVPLLSSKLMVQITDSGLSKEEGSGKKKTFLAS 511

Query: 520 -MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            + S               +       +   V    LF I    +       +     G 
Sbjct: 512 LLNSFKTFYEKTEVKYSGFLKWALCHRKIIVVSSVALFIISIALVPLVGMEFFPRSDAGS 571

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           I + +      +L      +  +          DG                        +
Sbjct: 572 ISISIKLPYGTNLEQTDKFVTQVIEKLEQIPEIDGILETTGSTTAMSIGGAFSESSEAGI 631

Query: 639 KKKITEIVP 647
             K+  +  
Sbjct: 632 SIKLVPLSE 640



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 63/153 (41%), Gaps = 9/153 (5%)

Query: 680  MLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +L+Y+ +             + T+ L I   +    L     N+T++  V+ L G  VN+
Sbjct: 882  VLVYMVMASQFESLKQPFIIMFTVPLAIIGVVFALLLTRRTINMTSLMGVIILAGIVVNN 941

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +V+ D +    +L    I   + I K+    L   + T++   + ++P+A+    G  +
Sbjct: 942  AIVLIDFIN---QLRERGIPRNEAIIKAGPSRLRPILMTTLTTILGLVPLALGLGEGAEL 998

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                A  +  G+ V+   ++ +   +     DW
Sbjct: 999  AAPMATSIIGGLTVSTILTLVVIPVVYTIFEDW 1031



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 50/179 (27%), Gaps = 3/179 (1%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V+ Q          +V   + K  +EI               I   +       V+   I
Sbjct: 283 VQKQSGYNTVQVAKKVKAEMTKLQSEIPVDIGYDAILDQSDYIEMSIDNVKSNAVMGGII 342

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           A+++           L    ++ + I  T           N+ ++  +   +G  V++ +
Sbjct: 343 AVIVIYLFLQHLRSTLIIGISIPVSIIATFILIYFNNFTLNMLSLGGLALGVGMLVDNSI 402

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           VV D +                     NE       +++      LP+    G     F
Sbjct: 403 VVLDNI---FSHRQAGEEPVAAAISGTNEVALAITASTLTTVAVFLPIVFVQGITAQLF 458


>gi|188997293|ref|YP_001931544.1| acriflavin resistance protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932360|gb|ACD66990.1| acriflavin resistance protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 1014

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/612 (10%), Positives = 158/612 (25%), Gaps = 38/612 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +        GL       + ++    FP                      +  
Sbjct: 7   RRPITTWMFMLAFIIAGLYSLKYIPVDRNPNVDFPIVSITT--------------TYKGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V+  +    ++  + +        +     ++IT+ F   +  +  A +V   +  
Sbjct: 53  SPYVVDTNVTRKIEDQLATISGIEAINSASYTGTSRITVIFDLDKDIDIAAQEVRDAVNR 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                 V+    ++          +    +     +     +    +    +    +   
Sbjct: 113 AQRSFPVNVDPPIVRKVDTGMAPTMAILLH---GYADYGTMAYYADKVIKREFERVKGVG 169

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP +L     T   +       +          +    +     
Sbjct: 170 QVDLGGFRDYVMWVRIDPLKLAGFKLTPMDVVNALQKNHVEIPAGRIDSQNREYTIRVYG 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   EI+ I +       D    +   D     +  + F     +             
Sbjct: 230 KGQSPEEINNIIIKNNIRIKDVGKAEFTFDEKRGLVRFKAFDSKEAE------------- 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I   +++ +     +        L           +          S + 
Sbjct: 277 -----PGIALIIYRQSKENTVEVSKRVIEKMNELNKQLPAGLRLDINYDASTFIERSVND 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L   V+F+ +   K   +   +I ++V+  +A+L   G +L   ++  + 
Sbjct: 332 ALHEIVIGALLTAFVVFLFLGSLKMTFIPSMAIPVSVLGAIAVLFFAGQSLNTFTLLALA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +GL +D  I+V E I   N +  +   + + G       +  S  + +   + + F  
Sbjct: 392 VAVGLVIDDAIVVMESIYRRNEEGLTGIEAAEKGTRTVVFALLASTASLIAIFIPILFVK 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
               +   GFA+T+ ++I IS   ++S    +   +++ K+             L    +
Sbjct: 452 SVIGKFFFGFALTLIVAIAISYIVSLSFTPMISARLVQAKEKNIFQRAYDKFESLFDVTL 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                          +   I      F       +  +G   +                 
Sbjct: 512 KWSLNHKAIVLAISIVTVMIGYKLASFVPKEFTPVVDEGRFLVRFETPTGSSFDFTDRKA 571

Query: 599 ESLQIGDISFQN 610
           + L+        
Sbjct: 572 KELEKIVEKNPY 583



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 69/162 (42%), Gaps = 7/162 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + +I++ IA+ + +   F+        + TL L I+   GF  L G   N+T+   ++ L
Sbjct: 849  LALIVAIIAVYMILASLFESLLHPFTVLLTLPLAISGVFGFILLTGTSLNVTSYFGIILL 908

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPM 786
            IG    D V+  +R+   ++L    +   + I ++  E L   + T++      I V   
Sbjct: 909  IGLVTRDSVLFIERI---IQLKKDGLDTYNAIIQARKERLRPILMTTLTIVASLIPVALG 965

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               G  +    AI +  G++ A   S+F+     + I   R 
Sbjct: 966  LTEGSEMRQPLAIAVIGGLMTALPLSLFVIPIFYMIIDKIRR 1007



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 79/242 (32%), Gaps = 8/242 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                   ++      +  +     ++  Q +        RV+E + +   ++     + 
Sbjct: 257 TFDEKRGLVRFKAFDSKEAEPGIALIIYRQSKENTVEVSKRVIEKMNELNKQLPAGLRLD 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
                   I R +       VI + +   +                 + + +   +    
Sbjct: 317 INYDASTFIERSVNDALHEIVIGALLTAFVVFLFLGSLKMTFIPSMAIPVSVLGAIAVLF 376

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G   N   + A+   +G  ++D +VV + +    +     ++  +  +K    T+  +
Sbjct: 377 FAGQSLNTFTLLALAVAVGLVIDDAIVVMESI---YRRNEEGLTGIEAAEKG-TRTVVFA 432

Query: 773 VYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  S A+ I++    ++  SVI      FA+ +   I ++   S+     I   +   + 
Sbjct: 433 LLASTASLIAIFIPILFVKSVIGKFFFGFALTLIVAIAISYIVSLSFTPMISARLVQAKE 492

Query: 829 KN 830
           KN
Sbjct: 493 KN 494


>gi|160883024|ref|ZP_02064027.1| hypothetical protein BACOVA_00987 [Bacteroides ovatus ATCC 8483]
 gi|260175457|ref|ZP_05761869.1| putative cation efflux transporter [Bacteroides sp. D2]
 gi|315923686|ref|ZP_07919926.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156111496|gb|EDO13241.1| hypothetical protein BACOVA_00987 [Bacteroides ovatus ATCC 8483]
 gi|313697561|gb|EFS34396.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1052

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/569 (12%), Positives = 167/569 (29%), Gaps = 41/569 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     T   +S      N +  G  F +     +   + 
Sbjct: 172 TVSISGAPQREIQVYCDPNKLEAYHLTIETISSIIGAENKNIPGGNFDIGSETYALRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  +++ + +                            F      I   +       
Sbjct: 232 EFDDSRQLADVVVGTH--------------------NGANVFLRDVARIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKIGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAVSGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G +    +     M   + IS   A+S+   +    +   KK   +     +      D 
Sbjct: 452 GMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKPSKMFKLFFTPIEKALDG 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT 566
           +   + +   W V    +  +  I     
Sbjct: 512 LDTWYAKMLNWAVRHRPIVIVGCIVFFVI 540



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 90/245 (36%), Gaps = 7/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   +V  +    +SV  ++ +     ++ + +P     
Sbjct: 256 DVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKI 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +         I      V+ + + ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GVIVDTSDNILNTIDSLTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AVSGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++       P+ +     G +       M   + ++  +++ +   +   +   + 
Sbjct: 433 VIASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQK 492

Query: 829 KNARI 833
           K +++
Sbjct: 493 KPSKM 497



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 82/252 (32%), Gaps = 8/252 (3%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                   SV   ++  +            ++  +V +      +     V    K     
Sbjct: 782  IYNAQGQSVRVKDVGKVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNKVIDKM 841

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
             +P                     G + ++I  I + I +  +F+   +    + +L   
Sbjct: 842  DLPGEVTIQISGSYEDQQDSFRDLGTLAILI-VILVFIVMAAQFESLTYPFIIMFSLPFA 900

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
             +  L      G   ++ ++   + LIG  V + +V+ D +          ++  + +  
Sbjct: 901  FSGVLMALFFTGSTLSVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGLAVINSVVT 957

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            S    L   + T+    + ++PMA+ GG    +    AI +  G+ V+   ++ +   + 
Sbjct: 958  SGKSRLRPVLMTTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTVSTILTLILIPTLY 1017

Query: 821  LFIYDWRAKNAR 832
                    KN R
Sbjct: 1018 CVFAGTGIKNRR 1029


>gi|319786085|ref|YP_004145560.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317464597|gb|ADV26329.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 1044

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 56/524 (10%), Positives = 142/524 (27%), Gaps = 38/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + V++  ++  +G +  +     +  L   P+  P               +     
Sbjct: 9   RRPVFAVVVSLLLVVLGAMSFM-----RLTLRELPNIDPPIV---------SVEVRYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + ++         R  +  +T+ F  +R  E  A+ V   +  
Sbjct: 55  SAAVVETRVTQILEDGLAGIEGIRTIQSQSRNGRADVTIEFNLTRDIEAAANDVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  +     +         I+         +   +E +    R  +D++   +   
Sbjct: 115 VMDRLPDEADPPEIAKVEADADVIIWLNMRST--VMDTMELTDYADRYVVDRLSALDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D   +     T   +       N               +   + 
Sbjct: 173 RVQLGGGQRYAMRIWLDRDAMAARGITAGDVESALRAENVELPAGRIESATRDFTLRVE- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                    +                      +           
Sbjct: 232 ------------------RGYRAPEQFANLPLRKGADGYVVRLGDVARVELGPEERRSYL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +       A   A +++          V   +      S   
Sbjct: 274 RSNGVPNVGLGIVRTSTANALDVARAARAEAEVIQKTLPEGTDIFVAYDSTIFIEASVER 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV  V+++ +   +  L+   ++ + ++     L   G ++ L ++  +V
Sbjct: 334 VYWTLAEAMVLVFGVIWLFLGSLRAALIPAVTVPVCLVAAFIALYAFGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E ++      +    +   G ++    +  +    +   + + F  
Sbjct: 394 LCIGLVVDDAIVVLENVQRRADLGEPPLVAARRGTAQVAFAVIATTAVLVAVFLPVGFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G      R  ++ +  ++ IS F A+++   M   ++R      
Sbjct: 454 GNTGRLFRELSVALAAAVAISAFVALTLTPMMTSKLVRPHSAPR 497



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 67/168 (39%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +   L  + T+ L +   L    + G   NL +   ++ 
Sbjct: 862  LLTFAMALLVVYLVLAAQFESFLHPLVIMLTVPLAVLGALIGLWVTGGTLNLFSQIGIVM 921

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG +  + +++ +      +L          I ++    L   + TS+A  +  +P+ V
Sbjct: 922  LIGLAAKNGILIVEFAN---QLRDEGRDVAAAIGEAARVRLRPILMTSVATVVGAVPLVV 978

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GG       +  I + FG+  +   S+++       +  +      +
Sbjct: 979  AGGPGSASRATIGIVIIFGVSFSTLLSLYVVPAFYALLAPFTRSPEAL 1026



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/210 (13%), Positives = 64/210 (30%), Gaps = 4/210 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +      ++       L  ++    +++   R      + I + +P 
Sbjct: 254 VRLGDVARVELGPEERRSYLRSNGVPNVGLGIVRTSTANALDVARAARAEAEVIQKTLPE 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
            T               + +    +  + + +   IW+       AL    T+ + +   
Sbjct: 314 GTDIFVAYDSTIFIEASVERVYWTLAEAMVLVFGVIWLFLGSLRAALIPAVTVPVCLVAA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   NL  + A++  IG  V+D +VV + +    +             +   +
Sbjct: 374 FIALYAFGFSINLLTLLALVLCIGLVVDDAIVVLENV---QRRADLGEPPLVAARRGTAQ 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                + T+       LP+    G+    F
Sbjct: 431 VAFAVIATTAVLVAVFLPVGFMEGNTGRLF 460


>gi|332881815|ref|ZP_08449461.1| putative multidrug efflux pump BpeF [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680242|gb|EGJ53193.1| putative multidrug efflux pump BpeF [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1053

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/682 (10%), Positives = 177/682 (25%), Gaps = 49/682 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G+L  +        + ++P   P               + +  + 
Sbjct: 8   RPVLSTVISILIVILGVLGIV-----SLPVSQYPDIAP-------------VTVSVRANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + +     L   +        I   +       IT+ F +    +N A  V  
Sbjct: 50  GGANAETVLKSVVIPLEEQINGVENMDYIVSSASNSGAANITVYFKNGTDPDNAAVLVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   N+ L  + K+  +     +   ++      D      +     +    I  +   
Sbjct: 110 RVSYANAILPAEVKQAGITIEKREAGQLMFLTFFSDNPEFGEVYLENYLGINIIPALKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L+    T  +++      +        G       +
Sbjct: 170 TGVGDADEYGGKNYSMRIWLDPQKLQAYKLTPTEINAAISAQSLEAAAGTLGQNSGSSYE 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                        +    +     G R         +       
Sbjct: 230 YTIKYKGK----------------YNSVSEYENIVIKALDGGRILRLKDVAKVELDALGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           S     + +  ++        +           +          
Sbjct: 274 TSFSESKGRAAIAMGISQTPGANAHEVVQNIEKYLKSIEKDLPEGVTYTINFNVNTFLDA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S    T      LV +V+++ +   +  L+   ++ ++++ T   L+L G ++ + ++
Sbjct: 334 AISKVLTTLLEAFLLVFLVVYIFLQDFRSTLIPAIAVPVSIVGTFFFLNLFGYSINMLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +  + ++    +     +     I    +      V 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHAKMEQTHEKAKPATISAMNEITGAIISITLVMAAVFVP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      + F +T+ ++I IS   A+++   +    ++    K       S    
Sbjct: 454 VTFIEGTTGVFYKQFGVTLIVAIAISAVNALTLSPVLCSLFLKPHGDKE--YEDKSVIGK 511

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 I F  A          F       L    +  G  +     +        D   
Sbjct: 512 FFHKFNIAFNAATLKYGQTFTFFLRHKWVTLVLFAIVGGGIYFANKNIQTGFVPNEDQGF 571

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V  +L  +    +               +        +          ++     + +  
Sbjct: 572 VLMDLSMIPGASMERV----ANEMREVSKDLDNIPGVENFTFVTGNGMLSGSGSNNGMGF 627

Query: 654 TEIVGPKISRELIRKGIVGVII 675
            ++   +   +  R+ I  +I 
Sbjct: 628 FKLKPFEERSKDPRQSIDAIIG 649



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/441 (10%), Positives = 129/441 (29%), Gaps = 20/441 (4%)

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
            L  +        + G  +  G   ++ +    +++    +++    S+D    +A++   
Sbjct: 598  LDNIPGVENFTFVTGNGMLSGSGSNNGMGFF-KLKPFEERSKDPRQSIDAIIGQAFAAAS 656

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                  ++        G G   G +  +       +       +  +  + +  ++K   
Sbjct: 657  KIKDAEIVFFQPPAVSGFGMGAGVSFALLNKSGADVTEIDKTAQEFIAALEKRPEVKYAK 716

Query: 525  INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             +  + +      I ++        V   +      I   + +           +   + 
Sbjct: 717  TSFNTNYPQYEMIINVERAMQSGISVNTLLSTLQNYIGGYYANDFTLYGKQFRVMVQTLP 776

Query: 585  ANRPVDLS------VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
              R    S         S   +     ++ +   G +       Y   D  A        
Sbjct: 777  DARKDVNSLNGMFVRTESGEMAPISEYVTLKRVFGPQAVSRYNLYTSVDISAANNEGYST 836

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIR------KGIVGVIISAIAM-LIYIWIRFKWY 691
               +  +  ++        G   +           + I+  I+S +    I       + 
Sbjct: 837  GDVVKAVEEVAAQTLNANYGIDYTGLTREEQNAGSQTIIIFILSLVFTYFILSAQYESYL 896

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + +L   I        LFG+E N+    +++ L+G    + +++ +     ++  
Sbjct: 897  LPLSVLMSLPFGIFGAYLGQWLFGLENNIYFQISLIMLMGLLAKNAILIVEFA---VQRR 953

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
                S       +    L   + TS A  + +LP+      G +   S A   A G ++ 
Sbjct: 954  RMGESLSKAAINAAMARLRPILMTSFAFIVGLLPLVFATGVGAAGNRSVATGAAVGQLIG 1013

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
                + +   + +   D + +
Sbjct: 1014 TFFGLVVIPVLFVIFQDLQER 1034



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 83/211 (39%), Gaps = 7/211 (3%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             Q    ++    + +E   K I + +P                  I K +  ++ + + 
Sbjct: 289 ISQTPGANAHEVVQNIEKYLKSIEKDLPEGVTYTINFNVNTFLDAAISKVLTTLLEAFLL 348

Query: 680 MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + + ++I    +   L     + + I  T  F  LFG   N+  + A++  IG  V+D +
Sbjct: 349 VFLVVYIFLQDFRSTLIPAIAVPVSIVGTFFFLNLFGYSINMLTLFALVLAIGIVVDDAI 408

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--G 795
           VV + +   M+          +   ++NE  G  +  ++      +P+  + G + +   
Sbjct: 409 VVVEAVHAKMEQTHEKAKPATI--SAMNEITGAIISITLVMAAVFVPVTFIEGTTGVFYK 466

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            F + +   I ++A +++   +P+L  ++  
Sbjct: 467 QFGVTLIVAIAISAVNAL-TLSPVLCSLFLK 496


>gi|237708201|ref|ZP_04538682.1| multidrug resistance protein [Bacteroides sp. 9_1_42FAA]
 gi|265756856|ref|ZP_06090844.1| multidrug resistance protein [Bacteroides sp. 3_1_33FAA]
 gi|229457754|gb|EEO63475.1| multidrug resistance protein [Bacteroides sp. 9_1_42FAA]
 gi|263233642|gb|EEZ19262.1| multidrug resistance protein [Bacteroides sp. 3_1_33FAA]
          Length = 1071

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/699 (10%), Positives = 178/699 (25%), Gaps = 59/699 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P               + +    
Sbjct: 9   RPILSAVISISIVVVGII-----GLFTLPVEQYPDIAPPT-------------IQVSTSY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  LQ      L   +   E +   +          IT+ F      +  A  V  
Sbjct: 51  FGASAETLQKSVIAPLEEAINGVENMTYMTSTASNAGVVDITVYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  +  +  + T+  +   + +               S  I       I   
Sbjct: 111 RVSKATGQLPAEVTQVGVTTSKRQTSILQMFSLYSPDDSYDEKFLSNYISINLKPAILRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     +        +     P  + Q     + ++      N       FG        
Sbjct: 171 QGVGDMMIMG-GDYSMRIWMKPDVMAQYKLIPSDVTQVLAEQNIESATGSFGENSDETYQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                    +                   +    +                +I       
Sbjct: 230 YTMKYKGRLI----------------TPEEFGEIVIRSSDNGEVLKLKEIADIEMGEESY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        +    A  +               +         +    +      
Sbjct: 274 AYHGAMNGHPGISCMIFQTAGSNATEVNNNIDAFLEEAKKDLPKGVEMVQVMSSNDFLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++++++ +   +  ++    I +++I T A +S+ G ++ L ++
Sbjct: 334 SIHEVIKTLFEAIFLVILIVYVFLQDIRSTIIPLVGIIVSLIGTFAFMSIAGFSINLITL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG  VD  I+V E ++         S   S+D     + + I  S +   +   
Sbjct: 394 FALVLVIGTVVDDAIVVVEAVQARFDVGYRSSYMASIDAMKGISNAVISSSLVFMAVFIP 453

Query: 476 VLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519
           V F  G        F +TM +++ IS   A+++  A+                     + 
Sbjct: 454 VSFMSGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALFLKPYINEDGTEKNNFAARF 513

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            K+ +    +        +     R       +     + +  +  T       + +G +
Sbjct: 514 RKAFNAAFDAMIERYKKGVLFFIKRKWMVWTLLVASVVLLAFLMNTTKTSLVPDEDQGVV 573

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V       L      +  ++   +           +       G   +   ++  +K
Sbjct: 574 FVNVSTAAGSSLKTTNDVMMRIEKRMMDIPQVL-HVQRVAGYGLLAGQGNSFGMLILKLK 632

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                    + +Q         + ++    I  +    I
Sbjct: 633 PWDEREGKENDVQAVIGQVYGRTADIKDASIFAISPGMI 671



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 79/201 (39%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +      LE  KK + + V +  + ++         E+I+     +    + +LI     
Sbjct: 301 NNNIDAFLEEAKKDLPKGVEMVQVMSSNDFLYASIHEVIKTLFEAI---FLVILIVYVFL 357

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 +  +  +I+ +  T  F ++ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 358 QDIRSTIIPLVGIIVSLIGTFAFMSIAGFSINLITLFALVLVIGTVVDDAIVVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++   G+       F + MA  
Sbjct: 418 FDVGYRSSYMASI--DAMKGISNAVISSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +      
Sbjct: 476 VGISAVNALTLSPALCALFLK 496



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 74/253 (29%), Gaps = 12/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E   +
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMFNSIAVNAMPAEGYSTGDAIRAVQETAVQ 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I   I  ++I  I   +Y      +      + ++
Sbjct: 850  ALPKGFGYDFGGITREETDQGGTTIIIFAICFLMIYLILSALY----ESFLIPFAVLLSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRD 759
               +  +  F  + G+E N+     ++ LIG      +++     +         +S   
Sbjct: 906  PFGLMGSFLFAKMMGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERRKAGMSLTS 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +    L   + T+      + P+ V    G +   S       G+V+   + +FI 
Sbjct: 962  AALSAAKARLRPILMTAGTMIFGLFPLMVASGVGANGNSSLGTGTVGGMVIGTLALLFIV 1021

Query: 817  APILLFIYDWRAK 829
              + +     + K
Sbjct: 1022 PSLFIVFQYLQEK 1034


>gi|227329099|ref|ZP_03833123.1| multidrug efflux system subunit MdtB [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 1040

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/621 (11%), Positives = 161/621 (25%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGII-----GYRALPVSALPEVDYPTIQ---------VITLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F      +     V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSTQSAGGASVITLQFQLELSLDVAEQDVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D       +        +++   +        +    +  +   +I        
Sbjct: 125 SNLLPNDLPYPPTYSKVNPADPPIMT-LAVTSSAMSMTQVQDMVDNRIAQKISQVAGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +   L     T+  +       N +                    
Sbjct: 184 VSLAGGQRPAVRVRLNAPALAAYGLTSETIRTAITAANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+      +                 I +    +  G  
Sbjct: 236 ------------VTLSANDQMKSVDDYRKLIVAWKNGAPVRLQDVATIEQAAENIHLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L+A                +   S    
Sbjct: 284 ANRQQAIIINVQRQPGANVITTTDSISKMLPALKASLPNSVEVTTLTDRTTSIRASVKDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYLFLRNAVATLIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENIARYIEKGEKPLNAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ +SILIS   ++++   M   +       K+ +    +      LI 
Sbjct: 464 IVGRLFREFAVTLAVSILISAVVSLTLTPMMCARMLSHQSLRKQNRFTRASERFFTRLID 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL---GVLANRPVDLS 592
                         + +S+      + +L    +  G        +    V A + V  S
Sbjct: 524 AYGVWLRKVLNHPWLTLSVALGTLLLTVLLYIWIPKGFFPIQDNGIIQGTVQAPQTVSFS 583

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    + +    +     + 
Sbjct: 584 NMADRQQRVASIIMKDPTVES 604



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+IY+++R      L     + L +  T       G   N   + A+    G+
Sbjct: 349 LAIALVVMVIYLFLR-NAVATLIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIATGF 407

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +VV + +    +         +   K   E     +  + +    ++P+   G  
Sbjct: 408 VVDDAIVVIENI---ARYIEKGEKPLNAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDI 464

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FA+ +A  I+++A  S+ +  
Sbjct: 465 VGRLFREFAVTLAVSILISAVVSLTLTP 492



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 84/223 (37%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++     + +      A    ++ + +   ++   + I           +  +   +  +
Sbjct: 811  DQFPSTTISFNVAKGYALGEAVDAITQAEQQMNLPADITTRFQGSTLAFQSALSSTVWLI 870

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + +AM I + + ++ +   +  ++TL       L    + G E ++ A+  ++ LIG 
Sbjct: 871  VAAIVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMMAGNELDVIAIIGIILLIGI 930

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D            +   D I ++        + T+MAA +S LP+ +    
Sbjct: 931  VKKNAIMMID--FALAAEREQGMKPYDAIYQACLLRFRPILMTTMAALLSALPLMLSTGV 988

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     I M  G++++   ++F    I L       +  R
Sbjct: 989  GAELRQPLGICMVGGLIMSQVLTLFTTPVIYLLFDRLATRFRR 1031


>gi|237723731|ref|ZP_04554212.1| multidrug resistance protein [Bacteroides sp. D4]
 gi|229437942|gb|EEO48019.1| multidrug resistance protein [Bacteroides dorei 5_1_36/D4]
          Length = 1071

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/699 (10%), Positives = 178/699 (25%), Gaps = 59/699 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P               + +    
Sbjct: 9   RPILSAVISISIVVVGII-----GLFTLPVEQYPDIAPPT-------------IQVSTSY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  LQ      L   +   E +   +          IT+ F      +  A  V  
Sbjct: 51  FGASAETLQKSVIAPLEEAINGVENMTYMTSTASNAGVVDITVYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  +  +  + T+  +   + +               S  I       I   
Sbjct: 111 RVSKATGQLPAEVTQVGVTTSKRQTSILQMFSLYSPDDSYDEKFLSNYISINLKPAILRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     +        +     P  + Q     + ++      N       FG        
Sbjct: 171 QGVGDMMIMG-GDYSMRIWMKPDVMAQYKLIPSDVTQVLAEQNIESATGSFGENSDETYQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                    +                   +    +                +I       
Sbjct: 230 YTMKYKGRLI----------------TPEEFGEIVIRSSDNGEVLKLKEIADIEMGEESY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        +    A  +               +         +    +      
Sbjct: 274 AYHGAMNGHPGISCMIFQTAGSNATEVNNNIDAFLEEAKKDLPKGVEMVQVMSSNDFLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++++++ +   +  ++    I +++I T A +S+ G ++ L ++
Sbjct: 334 SIHEVVKTLFEAIFLVILIVYVFLQDIRSTIIPLVGIIVSLIGTFAFMSIAGFSINLITL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG  VD  I+V E ++         S   S+D     + + I  S +   +   
Sbjct: 394 FALVLVIGTVVDDAIVVVEAVQARFDVGYRSSYMASIDAMKGISNAVISSSLVFMAVFIP 453

Query: 476 VLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519
           V F  G        F +TM +++ IS   A+++  A+                     + 
Sbjct: 454 VSFMSGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALFLKPYINEDGTEKNNFAARF 513

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            K+ +    +        +     R       +     + +  +  T       + +G +
Sbjct: 514 RKAFNAAFDAMIERYKKGVLFFIKRKWMVWTLLVASVVLLAFLMNTTKTSLVPDEDQGVV 573

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V       L      +  ++   +           +       G   +   ++  +K
Sbjct: 574 FVNVSTAAGSSLKTTNDVMMRIEKRMMDIPQVL-HVQRVAGYGLLAGQGNSFGMLILKLK 632

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                    + +Q         + ++    I  +    I
Sbjct: 633 PWDEREGKENDVQAVIGQVYGRTADIKDASIFAISPGMI 671



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 79/201 (39%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +      LE  KK + + V +  + ++         E+++     +    + +LI     
Sbjct: 301 NNNIDAFLEEAKKDLPKGVEMVQVMSSNDFLYASIHEVVKTLFEAI---FLVILIVYVFL 357

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 +  +  +I+ +  T  F ++ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 358 QDIRSTIIPLVGIIVSLIGTFAFMSIAGFSINLITLFALVLVIGTVVDDAIVVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++   G+       F + MA  
Sbjct: 418 FDVGYRSSYMASI--DAMKGISNAVISSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +      
Sbjct: 476 VGISAVNALTLSPALCALFLK 496



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 74/253 (29%), Gaps = 12/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E   +
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMFNSIAVNAMPAEGYSTGDAIRAVQETAVQ 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I   I  ++I  I   +Y      +      + ++
Sbjct: 850  ALPKGFGYDFGGITREETDQGGTTIIIFAICFLMIYLILSALY----ESFLIPFAVLLSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRD 759
               +  +  F  + G+E N+     ++ LIG      +++     +         +S   
Sbjct: 906  PFGLMGSFLFAKMMGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERRKAGMSLTS 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +    L   + T+      + P+ V    G +   S       G+V+   + +FI 
Sbjct: 962  AALSAAKARLRPILMTAGTMIFGLFPLMVASGVGANGNSSLGTGTVGGMVIGTLALLFIV 1021

Query: 817  APILLFIYDWRAK 829
              + +     + K
Sbjct: 1022 PSLFIVFQYLQEK 1034


>gi|332828973|gb|EGK01651.1| hypothetical protein HMPREF9455_02062 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1052

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/650 (10%), Positives = 180/650 (27%), Gaps = 44/650 (6%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIGV 88
            ++++P   P               + +           +       +   L    G+  
Sbjct: 32  PIEQYPQITPPV-------------VKIGASYPGANATTVSQAVATPIEQELNGTPGMIY 78

Query: 89  FSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
                  +    IT++F  S   +  A ++   ++   S+L  +  ++ +    +    +
Sbjct: 79  MESSSSNSGGLSITVTFDVSTNADLAAVEIQNRVKLAESRLPAEVLQSGITVEKQAPGQL 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +      D      I  S       +D I       +          +     P RL   
Sbjct: 139 LTIALTSDDPKYDEIYLSNYATINILDVIRRIPGVGRVSNVGSRYYGMQIWVYPDRLASF 198

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T   +       N        G + + + D              + +           
Sbjct: 199 GLTIKDLQDALKDQNRESAAGELGKQPIVNVD--------------VAMPITAQGRLSTV 244

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                 +    +       L                +     
Sbjct: 245 SQFEDIVVRANNDGSFIRMRDVARVSLEASSYSTESGLNGKYATMLSIYMLPGANAMQVA 304

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E        ++         ++          S      T      LV+IV+F+ +   +
Sbjct: 305 EEVKEAMVQIKQDFPEGLDYLIPFDMTEYIGESIHEVYKTLFEALALVIIVVFLSLQNWR 364

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN-RK 444
             ++   ++ +++I T   +  +G +L + ++ G+VL IG+ VD  I+V E +      K
Sbjct: 365 ASIIPIVAVPISLIGTFGFMLAMGFSLNMLTLLGLVLSIGIVVDDAIVVVENVERIMAEK 424

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMF 501
                 +  +  ++    +  +++      V + F     G   R F++T+ +S+LIS  
Sbjct: 425 KIGAREATHLAMNQLAGALIATSLVLAAVFVPVSFLDGITGSLYRQFSVTIVVSVLISAV 484

Query: 502 TAISIVRAMMIFI--------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
            A+++  AM   I         +    + I+    +      + +       R    G  
Sbjct: 485 VALTLSPAMCALILRPEEEGKKKNVVFRKINNWLATGNSKYANILMKVISNPRRVLAGFG 544

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           ++     +            + +G   + +       L  +R+  +       S  + + 
Sbjct: 545 MVMVFIFVLNKVVPTSFIPQEDQGYFTVELEMPEGTTLERMRTVTDRAIGYVDSLDDVEY 604

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            +N          +    T  + +   K  +      +++ +        
Sbjct: 605 VQNVTGSSPRVGTNQGRTTLTVILKSWKERKKGVDEVMRDVQKEFYNYPE 654



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 93/283 (32%), Gaps = 9/283 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +     +                + V AN       +R                     
Sbjct: 226 IVNVDVAMPITAQGRLSTVSQFEDIVVRANNDGSFIRMRDVARVSLEASSYSTESGLNGK 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
           +   L           +V E VK+ + +I          ++   ++  +           
Sbjct: 286 YATMLSIYMLPGANAMQVAEEVKEAMVQIKQDFPEGLDYLIPFDMTEYIGESIHEVYKTL 345

Query: 677 AIAMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             A+ + I + F     W  ++  I  + + +  T GF    G   N+  +  ++  IG 
Sbjct: 346 FEALALVIIVVFLSLQNWRASIIPIVAVPISLIGTFGFMLAMGFSLNMLTLLGLVLSIGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +VV + +     +    I  R+    ++N+  G  + TS+      +P++     
Sbjct: 406 VVDDAIVVVENV--ERIMAEKKIGAREATHLAMNQLAGALIATSLVLAAVFVPVSFLDGI 463

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            GS+   F++ +   ++++A  ++ ++  +   I     +  +
Sbjct: 464 TGSLYRQFSVTIVVSVLISAVVALTLSPAMCALILRPEEEGKK 506



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 65/145 (44%), Gaps = 8/145 (5%)

Query: 689  KWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  + +L I  +   LG +AL G++ ++     ++ LIG +  + +++ +  ++ 
Sbjct: 888  SWTVPISVLLSLPIAALGAFLGIWAL-GLDNDIYFQIGLVALIGLAAKNAILIVEFAKEQ 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +    + +       ++        + TS+A  + +LPM +    G +   S    + FG
Sbjct: 947  V---DSGMQPIFAAMQAAKLRFRPILMTSLAFVLGMLPMVIASGPGSASRHSIGTGVFFG 1003

Query: 805  IVVAASSSIFIAAPILLFIYDWRAK 829
            +++A +  I +     + +Y ++ K
Sbjct: 1004 MIIAITFGIILVPFFFVLVYKFKEK 1028


>gi|209550621|ref|YP_002282538.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209536377|gb|ACI56312.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 1108

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/672 (12%), Positives = 195/672 (29%), Gaps = 48/672 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  IG+         +  + RFP+                  +     
Sbjct: 9   RNPIAPLLAFCLLIFIGM-----QSFNKLPITRFPNIDVPLV---------SISVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    ++  + F      E     V   +  
Sbjct: 55  SPAELEMQVTKEIEDAIASITGIDEIQSTVTDGSSQTNVMFRMEVPTEQAVQDVKDAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    +  ++     +  +I     +         E S  +       +       
Sbjct: 115 IRSDLPATAEAPIVTKVDVEGQAIQTFAVSSPD--MSLEELSWFVDDTVKRALQGQAGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E  P +L     T A ++      N         V     +     
Sbjct: 173 RVDRYGGAEREVRIELTPGKLDAYGITAASVNEQLRGTNIDLGSGRGQVAGSEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  E++   +      F   +   VV  +++E  +   F  T               
Sbjct: 233 DARNVAELADTTIALPNGRFVKLSDLGVVKDTYEEPKSFSRFNDTP-------------- 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +   ++      +        P     + + +V    G+   
Sbjct: 279 -------VVTFGVFRSKGASEVSVAETVAQSLEKVRTENPNVKIELIDDSVYFTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+ + +   +  L++  ++ L+ I T  ++ ++G +L L S   + 
Sbjct: 332 AIHTLLEGALLAVIVVLLFLRNWRATLISAIALPLSAIPTFWVMDMMGFSLNLVSFLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    +  ++ + +           +  +  T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIKMGKTPYRAAIEAADEIGLAVIATTFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIR-----YKKMKSIDINPLSRFFL 533
           G   +    F +T+  S+  S+  A  I   M  +++R          +  +       L
Sbjct: 452 GIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMRAEDGVDDHHDNDSLLMRGYTRL 511

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           I       + R     V          + L+   G     +    I L V       L  
Sbjct: 512 IRGTTGRWYTRYATLFVAF-GFLIGSVLLLMQVPGSFLPPEDASRIVLSVELPPNARLDD 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                +++   D        E  F++      GD   +   + +   K+ + +    + +
Sbjct: 571 TEKTTDAI--YDRVKDINGVESVFVLGGASPKGDLELRRATITLALHKLDQSLIKKMVND 628

Query: 654 TEIVGPKISREL 665
                P I   L
Sbjct: 629 GLGHIPLIGPML 640



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 69/233 (29%), Gaps = 7/233 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       SF  F+        +    G S            +       +       
Sbjct: 260 VVKDTYEEPKSFSRFNDTPVVTFGVFRSKGASEVSVAETVAQSLEKVRTENPNVKIELID 319

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +       I  ++  + +A+++ +     W   L +   L L    T     + G
Sbjct: 320 DSVYFTYGNYEAAIHTLLEGALLAVIVVLLFLRNWRATLISAIALPLSAIPTFWVMDMMG 379

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL +  A+    G  V+D +V  + +    +      +      ++ +E     + T
Sbjct: 380 FSLNLVSFLALTLATGILVDDAIVEIENI---ARHIKMGKTPYRAAIEAADEIGLAVIAT 436

Query: 776 SMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +       +P++   G        F + +AF +  +   +  I   +  ++  
Sbjct: 437 TFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMR 489



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 46/123 (37%), Gaps = 6/123 (4%)

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                      + +L L I        +     ++  +  +L L+G    + +++ D   +
Sbjct: 895  FRDVIQPFTILLSLPLAIGGVAAALIITSNPLSMPVMIGILMLMGVVTKNAILLVDFAIE 954

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
                    ++  + + ++  +     + TS+A    +LP A+    GGS     AI +  
Sbjct: 955  MRH---HGMARVEAMVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIG 1011

Query: 804  GIV 806
            GI+
Sbjct: 1012 GII 1014


>gi|293611013|ref|ZP_06693312.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826665|gb|EFF85031.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1032

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/629 (9%), Positives = 161/629 (25%), Gaps = 48/629 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP+      +                 
Sbjct: 9   KYPVFTIMMMLSLMVLGLAS-----WKRMTVEEFPNIDFPFVV---------VTTQYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +  + +   F         A  V   +  
Sbjct: 55  SPEAVESDITKKLEDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   +    ++         I+      +       + S  + ++ + Q+       
Sbjct: 115 VTAQFRDEIDTPIVQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  +  P++L+       ++       N          +        Q 
Sbjct: 173 NVNLLGDAKRQIRIKVIPAQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                           D+          F      +    A +    
Sbjct: 233 KV--------------------IHPLAFGDLVIANKNGSPIFLKQVATVEDTQAELQSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    ++        L+          V   +      S   
Sbjct: 273 FYNGRTAVSVDILKSSDANVIKVVDQTYQTLEKLKDQMPAGLDYKVVADSSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VVRTIIEGAALAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHTELGKDHVTAALEGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G     F +T+  ++LISMF + ++   +                +    I      
Sbjct: 453 GLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKKDNWLQRFFNHISNLLDR 512

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              +    + +         +                         KG +++        
Sbjct: 513 LTHVYEKLLKLALRFRFITVIVAIASLFAALGLSKLIGTEFVPTPDKGEVRIQFETPVDS 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            L   ++ L  +      F +       +
Sbjct: 573 SLEYTQAKLHQVDQIIRQFPDVVSTYGVV 601



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 87/256 (33%), Gaps = 12/256 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+AN+      ++              +        V +           +V++   + +
Sbjct: 244 VIANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDILKSSDANVIKVVDQTYQTL 303

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRFKWYFALGAIT 698
            ++           V    S+ +           +  +A+A+LI +     +   +    
Sbjct: 304 EKLKDQMPAGLDYKVVADSSKGIRASIKDVVRTIIEGAALAVLIVLLFLGSFRSTVITGL 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISF 757
           TL + +  TL F   FG   N+  + A+   IG  ++D +VV    R+N+  +T      
Sbjct: 364 TLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVV----RENIVRHTELGKDH 419

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIF 814
                +   E     + T++      LP+A  GG +      F + ++  ++++   S  
Sbjct: 420 VTAALEGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTAVLISMFISFT 479

Query: 815 IAAPILLFIYDWRAKN 830
           +   +     D   K 
Sbjct: 480 LDPMLSAHWKDPVKKK 495



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 861  ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFQSTLNLFSIIGII 920

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K     +S  D I ++    L   + T+ A  + ++P+A
Sbjct: 921  MLMGLVTKNAILLIDFIK---KAMDQGVSRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 977

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 978  LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 1020


>gi|78212722|ref|YP_381501.1| preprotein translocase subunit SecD [Synechococcus sp. CC9605]
 gi|78197181|gb|ABB34946.1| protein-export membrane protein SecD [Synechococcus sp. CC9605]
          Length = 493

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 131/525 (24%), Positives = 218/525 (41%), Gaps = 51/525 (9%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV----N 67
                + L I    FL ++ L+            LGLDLRGGS L +EV     +     
Sbjct: 7   WFALVLALAIGAGMFLVRTPLE------------LGLDLRGGSQLTVEVKPAGEITRVGA 54

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
             ++     L   +   G+   +++   ++++ L     +     A  +           
Sbjct: 55  EEMEAVKAVLDRRVNGLGVAESTLQTVGESQLVLQLPGEQDPTAAARVLGDTALLEFRAQ 114

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             D +                      + +     Q   I+R R DQI   E        
Sbjct: 115 KSDTEAEF-------------------RGLRQLRSQVEAILRLREDQIRRGE-------- 147

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                  P   D  +L+    T              ++        L        L   +
Sbjct: 148 ------TPEPLDLDQLKSTQQTLGLDGQASTEEEQLRQLLNKVDSDLLTMLEPAALTGKQ 201

Query: 247 VEISGIHLNGATANFDPKTHKP-VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
           +  +G        N    T               +      R         ++    +  
Sbjct: 202 LVTAGRQPLQNNPNNWEVTLNFDGEGAEAFADLTKSIAGTDRLLAITLDDQLISAASVGP 261

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
              +  I  G A ISGNF+ ETA  L   LR GSLP+ + ++E R +G  LG+++I +  
Sbjct: 262 QFKSAGISGGAATISGNFSAETARELEVKLRGGSLPLPVEVIEVRTIGPTLGAENIRRSL 321

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A ++GL L+ +FM+V Y   G VA  ++ L  +  LA+ +L+  TLTLP IAG +L IG
Sbjct: 322 VASLSGLALVAVFMVVAYRLPGAVAVMALSLYALFNLAVYALIPVTLTLPGIAGFILSIG 381

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +AVD+N+L+ ERI++E R+  ++  S+D GFS A+S+I D ++T LI+   LFF G G V
Sbjct: 382 MAVDANVLIFERIKDELRRGNTLIRSIDTGFSEAFSSIVDGHLTTLISCAALFFLGTGLV 441

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           +GFA T+G+ +L+S+FTA++  R ++ F++ Y  ++       + 
Sbjct: 442 KGFAATLGIGVLLSLFTALTCTRTLLRFLMGYAGLRRASNFLPTW 486



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E IR+ +V  +     + +++ + ++   A+ A+  L L     L  +AL  
Sbjct: 307 TIGPTLGAENIRRSLVASLSGLALVAVFMVVAYRLPGAV-AVMALSLYALFNLAVYALIP 365

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++      +    ID   +E     V  
Sbjct: 366 VTLTLPGIAGFILSIGMAVDANVLIFERIKDELR---RGNTLIRSIDTGFSEAFSSIVDG 422

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +   IS   +   G  ++  FA  +  G++++  +++     +L F+  +
Sbjct: 423 HLTTLISCAALFFLGTGLVKGFAATLGIGVLLSLFTALTCTRTLLRFLMGY 473


>gi|194436360|ref|ZP_03068462.1| multidrug resistance protein MdtB [Escherichia coli 101-1]
 gi|253772991|ref|YP_003035822.1| multidrug efflux system subunit MdtB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162066|ref|YP_003045174.1| multidrug efflux system subunit MdtB [Escherichia coli B str.
           REL606]
 gi|300897076|ref|ZP_07115542.1| putative ATP synthase F0, A subunit [Escherichia coli MS 198-1]
 gi|300930972|ref|ZP_07146332.1| putative ATP synthase F0, A subunit [Escherichia coli MS 187-1]
 gi|301026383|ref|ZP_07189828.1| putative ATP synthase F0, A subunit [Escherichia coli MS 196-1]
 gi|194425088|gb|EDX41073.1| multidrug resistance protein MdtB [Escherichia coli 101-1]
 gi|242377728|emb|CAQ32489.1| mdtB, subunit of MdtABC-TolC multidrug efflux transport system
           [Escherichia coli BL21(DE3)]
 gi|253324035|gb|ACT28637.1| acriflavin resistance protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973967|gb|ACT39638.1| multidrug efflux system, subunit B [Escherichia coli B str. REL606]
 gi|253978161|gb|ACT43831.1| multidrug efflux system, subunit B [Escherichia coli BL21(DE3)]
 gi|299879701|gb|EFI87912.1| putative ATP synthase F0, A subunit [Escherichia coli MS 196-1]
 gi|300359126|gb|EFJ74996.1| putative ATP synthase F0, A subunit [Escherichia coli MS 198-1]
 gi|300461198|gb|EFK24691.1| putative ATP synthase F0, A subunit [Escherichia coli MS 187-1]
 gi|323961716|gb|EGB57319.1| AcrB/AcrD/AcrF family protein [Escherichia coli H489]
          Length = 1040

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/652 (10%), Positives = 171/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++  F++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|162456532|ref|YP_001618899.1| AcrB/AcrD/AcrF family protein [Sorangium cellulosum 'So ce 56']
 gi|161167114|emb|CAN98419.1| AcrB/AcrD/AcrF family protein [Sorangium cellulosum 'So ce 56']
          Length = 1067

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/572 (12%), Positives = 166/572 (29%), Gaps = 41/572 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  +G+         +  LD+FP       +             L+  
Sbjct: 10  KRPVFASVLMLVIVVLGVA-----GYTRLGLDQFPDIDVPYVV---------VTTRLDGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + +        +  Q  +++ + F   +  +  A +V   +  
Sbjct: 56  APEEVEAEISDRIEGAVNTISGIEELRSTSTQGVSQVVVGFVLEKDADVAAQEVRDKINA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L       ++         ++L     DQ I    E + + +R+   QI       
Sbjct: 116 VLPSLPKGIDPPIVSRIDLGAAPVMLVSVASDQPIRELSEIADKRVRR---QIEGISGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         Q+    DP  LR    T A++       N    G                
Sbjct: 173 QVSLIGAQSRQINVWLDPFALRAQGITAAEVQRAIAAQNLMTPGGSVE------------ 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G            ++ + +  I   E             +    A      
Sbjct: 221 --------TGPEDLTLRVMGRVESPEALGRIVLREQDGHAVRLSDVARVEDGRAEEKTWA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            ++  +    ++        ++          V            + 
Sbjct: 273 QLDERRTVLLSVVKQSGQNTVAVVDAVKARLDEVQRSLPEGTKIEVVRDGSRVIRTGIAA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K    + A L   V+ + +   +  L+A  +I ++V+ T A++ + G TL   ++  + 
Sbjct: 333 VKEHLVLGALLAAAVVLLFLGNARSTLIAALAIPISVVGTFAVMWIAGFTLNFLTLLALA 392

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L +G+ +D  I+V E I    + K    F +  +        +  + ++ +   + + F 
Sbjct: 393 LAVGIVIDDAIVVLENIVRYIDEKGMKPFPAAVLATKEIGLAVLATTLSLMAVFIPVAFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G  ++ F +TM  +I +S+  + S+  ++    +        D             
Sbjct: 453 PGIVGRFLKSFGLTMAFAIGVSLIVSFSLTPSLAARWLSGHARSGRDARDARDAHDGAPA 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL 569
                 RA            + ++  +     
Sbjct: 513 KPSVLERAVDVFYRPIERAYMAALSWVMKRRW 544



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 55/145 (37%), Gaps = 5/145 (3%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L A   + + +  T     + G   N   + A+   +G  ++D +VV + + + +  
Sbjct: 356 RSTLIAALAIPISVVGTFAVMWIAGFTLNFLTLLALALAVGIVIDDAIVVLENIVRYIDE 415

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               +        +  E     + T+++     +P+A   G V   + SF + MAF I V
Sbjct: 416 --KGMKPFPAAVLATKEIGLAVLATTLSLMAVFIPVAFMPGIVGRFLKSFGLTMAFAIGV 473

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +   S  +   +        A++ R
Sbjct: 474 SLIVSFSLTPSLAARWLSGHARSGR 498



 Score = 46.6 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 72/214 (33%), Gaps = 20/214 (9%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   + +       V  + V   + + I E    +      +   K +       +V +
Sbjct: 818  GRRRQITISANAAPGVGDSAVQAALDRIIAEQRMPAGYSAQPVGSSKNTASTAASFVVVI 877

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ + M + +  +F+ W   +  + +L L +   L    LFG   NL +   +L L G 
Sbjct: 878  GLAFVFMYLILAAQFESWLHPITILLSLPLTVPFALLSLKLFGQSLNLFSGLGLLVLFGV 937

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM------ 786
               + ++  D       L    +     I ++  + L   + T++A    ++P+      
Sbjct: 938  VKKNAILQIDH---TNHLRAEGMPRLQAILQANKDRLRPILMTTIAFVAGMIPLVLSHGV 994

Query: 787  ----------AVWGGSVIGSFAIPMAFGIVVAAS 810
                       V GG  +      +A  +  +  
Sbjct: 995  GSGQNRTTGAIVLGGQSLSLILTLLAVPVAYSLF 1028


>gi|188533452|ref|YP_001907249.1| multidrug efflux system subunit MdtC [Erwinia tasmaniensis Et1/99]
 gi|226700774|sp|B2VFQ4|MDTC_ERWT9 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|188028494|emb|CAO96356.1| Multidrug resistance protein [Erwinia tasmaniensis Et1/99]
          Length = 1024

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 75/655 (11%), Positives = 161/655 (24%), Gaps = 38/655 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G L           +   P       +             L    
Sbjct: 10  RPVATWLLTLTIVLAGFL-----GFRLLPVAPLPQVDFPVIV---------VTASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S       + L F   R     A  V   +   
Sbjct: 56  PEIMASSVATPLERALGRIAGVSEMTSSSSLGSTHVILLFDFDRDINGAARDVQGAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       +   ++   +    
Sbjct: 116 QSLLPSGMPNRPSYRKVNPSDAPIMI-MTLTSDTYSPGQLYDYASTKLAQRLAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  + +P  L     +   +       N  K         LR        
Sbjct: 175 VTVGGSSLPAVRVDLNPQALFNQGVSLDAVRSTIANANVRKPQGAIEDSQLR-------- 226

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                            N +  T      +                 +   +  V +  +
Sbjct: 227 ------------WWIKTNDELHTAAEYRPLVIHYRNGAAVRLQDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     Q +   T++        LR          + + +      S    
Sbjct: 275 SNARPAVLLVIRKSPQANIIDTVDRIRGEVPELRNTLPASIGLDIAQDSSRTIRASLHEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + + AI  GLV++V+F  +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQSLAISVGLVVLVVFAFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +I+ +   + L     
Sbjct: 395 ATGFVVDDAIVVLENISRHVEAGMKPLLAALKGVREVGFTVISMSISLVAVFLPLLLMDG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   + FAIT+ +SI IS+  ++++   M   ++R    +           L+     
Sbjct: 455 IIGRFFKEFAITLSVSIAISLVISLTLTPMMCARLLRPNAPRQQPRLRGFGRILMAIQRG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                          L    +   L  +            Q        +      S   
Sbjct: 515 YGRGLHWVLDHARWGLLVFVATLGLTVYLYISIPKTFMPEQDTGRLMGFIQADQSISFQA 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                +   +    +      + +  G       +   +K           + + 
Sbjct: 575 MRGKLETFMRIVRDDPAVESVVGFTGGSDTNSGSMFIALKPLSARSDNAQQVISR 629



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +  + +L+           L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVGLV-VLVVFAFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTVAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +     +       K + E     +  S++     LP+ +  
Sbjct: 397 GFVVDDAIVVLENI---SRHVEAGMKPLLAALKGVREVGFTVISMSISLVAVFLPLLLMD 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G +      FAI ++  I ++   S+ +  
Sbjct: 454 GIIGRFFKEFAITLSVSIAISLVISLTLTP 483


>gi|158422987|ref|YP_001524279.1| RND efflux transporter precursor [Azorhizobium caulinodans ORS 571]
 gi|158329876|dbj|BAF87361.1| RND efflux transporter precursor [Azorhizobium caulinodans ORS 571]
          Length = 1039

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/527 (13%), Positives = 146/527 (27%), Gaps = 38/527 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+     +L + +  +GL         Q  +   P             L+      L   
Sbjct: 17  RHPIGTSLLMAGLLVLGLAA-----FFQLPVAPLPDVDFPT-------LQ--VSTQLPGA 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +           Q  + ITL F         A  V   +  
Sbjct: 63  SPEIIATSVTQPLERQFGEIPGVAQMTSISTQGNSSITLQFNLEVNINAAAQLVQAAINA 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D                +L    +       I             I   E   
Sbjct: 123 AGGQLPNDLPSPPSYREVNPADPPILV-LALSSQTLPIIRVDDFAENVLEQHISQIEGVG 181

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L   +    +  + DP+++  L  +   +    V    +                  +
Sbjct: 182 QVLVFGQQKPSVRIQVDPAKVSSLGLSLEDLRQAIVSTTVNGPKGTVQ------GQRRTF 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  +I+                 P  D                    +         
Sbjct: 236 TLLDNDQIT--------------QAGPWQDAILAYRNGAPVRVRDIGRAVEAPENTQLAA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T+E+       L A +       V          S S 
Sbjct: 282 WANGKPAILLPVFKLPGANVIATVESIKQRLPALPASAPAGLDISVLSDRTATIRASVSD 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+ V+F+ +      ++   ++ L +I T   +  L  +L   S+  + 
Sbjct: 342 VEKTLVITVVLVVAVIFVFLRSFWATVIPSVAVPLALIGTFGAMYALHYSLDNLSLMALS 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I++ E I       ++   +   G +    TI   +++ +   + L   G
Sbjct: 402 IAIGFVVDDAIVMLENIERHLEMGKTALQAALDGSAEIGFTILSISLSLVAVFIPLLLMG 461

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
              G   + FA+T+ ++I +S F ++++   +   +++ ++      
Sbjct: 462 GLVGRLFQEFAVTVTITIAVSAFVSLTLTPTLCALVLKPRQENRHGR 508



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 6/149 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               ++  +     + L +  T G         +  ++ A+   IG+ V+D +V+ + + 
Sbjct: 360 FLRSFWATVIPSVAVPLALIGTFGAMYALHYSLDNLSLMALSIAIGFVVDDAIVMLENI- 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +      +          E     +  S++     +P+ + GG V      FA+ + 
Sbjct: 419 --ERHLEMGKTALQAALDGSAEIGFTILSISLSLVAVFIPLLLMGGLVGRLFQEFAVTVT 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             I V+A  S+ +   +   +   R +N 
Sbjct: 477 ITIAVSAFVSLTLTPTLCALVLKPRQENR 505



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 69/156 (44%), Gaps = 7/156 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + + + + + ++ +   L  ++TL       L   ++F  +F++ A+ AVL LIG
Sbjct: 870  VAAALLVIYVILGVLYESYIHPLTILSTLPSAGLGALISLSVFHFDFSIIALVAVLLLIG 929

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ D   +         S  + I ++        + T+MAA ++ +P+ V   
Sbjct: 930  IVKKNGIMIVDFALE---RERAGASPLEAIREACLLRFRPILMTTMAALLAGVPLLVGTG 986

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +       +  G++V+   +++    I L++ 
Sbjct: 987  TGSELRQPLGCAIVGGLIVSQLLTLYTTPVIYLYLD 1022


>gi|67459501|ref|YP_247125.1| hydrophobe/amphiphile efflux-1 HAE1 family protein [Rickettsia
           felis URRWXCal2]
 gi|67005034|gb|AAY61960.1| Hydrophobe/amphiphile efflux-1 HAE1 family protein [Rickettsia
           felis URRWXCal2]
          Length = 1008

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 76/625 (12%), Positives = 173/625 (27%), Gaps = 53/625 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  +G +     F  +  +   P                   + +E  
Sbjct: 9   KRPVFATVLSLVIVALGAI-----FFTKLQIRGTPDISVPI-------------INVEAH 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +   +    ++    +K            ++ ITLSF  S   E   + V  
Sbjct: 51  YAGADALYMEKEITTRIEKALKTVKNLDYITSQSSTGESSITLSFLLSTDIEVALNDVRS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  +      D K   +          +      DQ     +E +  +       +   
Sbjct: 111 KISDITYMFPQDMKAPSVAKLDADSFPSLFISVESDQYSD--LELTKIVEDNLQTPLDKL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           ES  Q          +  E D  +L Q   +  ++       N          +      
Sbjct: 169 ESVGQSQIYGGREYIMRIEPDSKKLYQHKISLLEIESAIKEQNKDYPAGTIKTKSNNFIV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  +    E                      +I                 I       
Sbjct: 229 TLEGSLSTPEEFG--------------------NIILKVQNGGIIKLRDIAKISLTSPDE 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +++ +              ++          +          
Sbjct: 269 DIIFRYNGKSSIALGLIKESKANVIDLSNEVTKELERIKESMPKGISMGIAYDGATPVKA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V ++ +   K  L+   +I +++I T +++   G ++ + ++
Sbjct: 329 SIYAVFQTIFEALILVVLVTYLFLASAKITLIPFVTIPVSLIGTFSVMYAFGFSINIFTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I++ E I   N        +  +        I    IT     + +
Sbjct: 389 LAMILAIGLVVDDAIVMLENIFRYNEMGHKPMEAALLASKEIGFAIIAMTITLAAVFLPV 448

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPL 528
            F  G   +    FA T+   +L S F A+++   M   ++        K +   +    
Sbjct: 449 GFIEGFIGKLFIEFAWTLAFCVLFSGFVALTLTPMMSSRMVTKHNTDLPKFLVKFNDILQ 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    + + F   + + + I+  F +  I   FT  +    +  G +Q+ +     
Sbjct: 509 FIQNKYIYYLKLTFDNKKKFVIIIASSFIVLIISFKFTQKIFVPQEDDGFLQVSLKGPEG 568

Query: 589 VDLSVVRSNLESLQIGDISFQNFDG 613
             L      ++  +    ++++  G
Sbjct: 569 SSLESSTKVVKEAEKILANYKDILG 593



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 83/245 (33%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I L V     + L  +     +    DI F+        L  ++    + +  +  + 
Sbjct: 241 GNIILKVQNGGIIKLRDIAKISLTSPDEDIIFRYNGKSSIALGLIKESKANVIDLSNEVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              ++I E +P          G    +  I      +  + I +++            L 
Sbjct: 301 KELERIKESMPKGISMGIAYDGATPVKASIYAVFQTIFEALILVVLVTYLFLASAKITLI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T      FG   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 361 PFVTIPVSLIGTFSVMYAFGFSINIFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGH 417

Query: 756 SFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +    T  A F+ V  +  + G +   FA  +AF ++ +   +
Sbjct: 418 KPMEAALLASKEIGFAIIAMTITLAAVFLPVGFIEGFIGKLFIEFAWTLAFCVLFSGFVA 477

Query: 813 IFIAA 817
           + +  
Sbjct: 478 LTLTP 482



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 91/271 (33%), Gaps = 11/271 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              + L F       I     I +    N  + L  + +  E + +   S  N        
Sbjct: 744  YDVILQFNQKDRKDISDFSKILIRAKNNNMLPLESIANITEKISVKSYSHYNNSKSVTIS 803

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              L      + A   + ++  K +     +           +         ++  + + +
Sbjct: 804  SDLAPDGKINDAINEINKITAKLLDPSNTIIEYIGEIKQMREADS----NMLITFVFALV 859

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  +  +   IT  +    L G   N+ +   ++TLIG    + 
Sbjct: 860  FIYLVLAAQFESFTDPLLILLAVPFSITGGVLALWLAGNSLNMYSNIGLITLIGLITKNS 919

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ +      +L    +  ++ I +S    L   + T++AA +  LP+      G +  
Sbjct: 920  IMIVEFAN---QLREKGVKVQEAIIESSKLRLRPILMTTLAAVVGALPLVFADGAGAAAR 976

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             S    +  G+ +    +IF+   I      
Sbjct: 977  NSIGFVIVGGLSIGTIFTIFVIPVIYQTFKK 1007


>gi|300921721|ref|ZP_07137887.1| putative ATP synthase F0, A subunit [Escherichia coli MS 182-1]
 gi|331677986|ref|ZP_08378661.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli H591]
 gi|300421859|gb|EFK05170.1| putative ATP synthase F0, A subunit [Escherichia coli MS 182-1]
 gi|331074446|gb|EGI45766.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli H591]
          Length = 1040

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGQGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLEERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|262381296|ref|ZP_06074434.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296473|gb|EEY84403.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 1494

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/634 (11%), Positives = 170/634 (26%), Gaps = 42/634 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPVDQYPQITPPV-------------VKISATYPGASALTVSQAVATPIEQELNGTPGMI 77

Query: 88  VFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +    IT++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMQSSSSNSGSLNITVTFDVSADADLAAVEIQNRVKLAESRLPAEVIQNGITIEKQAPSQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++      D      I  S       +D +       +          +     P RL  
Sbjct: 138 LMTLSLMSDDPKFDEIYLSNFATINVLDVLRRIPGVGRVSNIGSRYYGMQIWVYPDRLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           +  T   +       N        G + + D D     +     +S              
Sbjct: 198 MGLTVKDLQDALKDQNRESAAGELGKQPVLDVD-VTLPITAPGRLS-------------T 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +    +       +                +    
Sbjct: 244 VKEFEDIVVRANPDGSIVRMSDVARVSLEASSYSTESGINGKNAAILGIYMLPGANALEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
                     +                      S      T      LV++V+F+ +   
Sbjct: 304 ATKVKEAMKDISKNFPEGLEYNFPFDMTEYISQSVHEVYKTLFEALFLVVLVVFLSLQNW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN-R 443
           +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +      
Sbjct: 364 RAALIPTIAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGIVVDDAIVVVENVERIMAE 423

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
           +  +   +           +  +++      V + F G   G   R F++T+ +S+L+S 
Sbjct: 424 ERVTAREATHKAMRELSGALIATSMVLAAVFVPVSFLGGITGQLYRQFSVTIVVSVLLST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA------IQFMRARFWGVGISI 554
             A+++  AM   I+R    K   I      +L            I     R    G  +
Sbjct: 484 VVALTLSPAMCAIILRPSHKKKAFIFRKINLWLAKGNKKYTKLLRISIANPRRILAGFGM 543

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
           +     +            + +G   + +       L   R+  +               
Sbjct: 544 VLVAIFVLNRVLPTSFIPEEDQGFFTVELEMPEGTTLERTRAVTDRAIEFLDHHPAVAYV 603

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +N          +    T  + +   +  +   +
Sbjct: 604 QNVTGSSPRVGTNQGRATLTVILKPWEERKSSGM 637



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 12/147 (8%)

Query: 689  KWYFALGAITTLILDITKTLGFF---ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             W   +  + +L      TLG +    + G+E ++     ++TLIG +  + +++ +  +
Sbjct: 889  SWIVPIAVLLSLP---VATLGAYLGIWVTGLENDIYFQIGLVTLIGLAAKNAILIVEFAK 945

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
                     +        +        + TS+A  + +LPM +    G +   S    + 
Sbjct: 946  ---VQVDNGVDVVKAAIHAAQMRFRPILMTSLAFVLGMLPMVLASGPGSASRHSIGTGVF 1002

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
            FG++VA +  I +     + IY  + K
Sbjct: 1003 FGMLVAITVGIVLVPFFFVLIYKIKGK 1029



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL     + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +     
Sbjct: 363 WRAALIPTIAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGIVVDDAIVVVENV--ERI 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPM 801
           +    ++ R+   K++ E  G  + TSM      +P+  + G  G +   F++ +
Sbjct: 421 MAEERVTAREATHKAMRELSGALIATSMVLAAVFVPVSFLGGITGQLYRQFSVTI 475


>gi|148559977|ref|YP_001258316.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella ovis ATCC 25840]
 gi|148371234|gb|ABQ61213.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella ovis ATCC 25840]
          Length = 1043

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 158/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++ + +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   ++     +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFREFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 69/164 (42%), Gaps = 7/164 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G     +    +  G+ +A  +++++     L +  +    
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTKPK 1021


>gi|148238492|ref|YP_001223879.1| RND family multidrug efflux protein [Synechococcus sp. WH 7803]
 gi|147847031|emb|CAK22582.1| Multidrug efflux transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1)
           family (2.A.6.2.), RND superfamily [Synechococcus sp. WH
           7803]
          Length = 1096

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/524 (11%), Positives = 148/524 (28%), Gaps = 32/524 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +      +   +I  +GL+       P   +   P+  P               +     
Sbjct: 9   KRPVLTTVCSILIVLMGLIAI-----PTLPIANLPNIAPPL-----------IQVTANYS 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLF 118
                     +    ++  +          +   + Q+ I++ F ++   +     V   
Sbjct: 53  GANSLVTEQAVTNPLEQQINGAPGASYIYSTSNMEGQSIISVYFDETTDIDIDQVNVQNR 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L        +         ++  + +  +    +   +  + +Q    +    
Sbjct: 113 VSLAMPQLPSQVSDTGVSVQQSTPSILLAYEVSSTEGQFDSAYLNGLVYQQLYYPLERVP 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                              DP +L     T  ++       N +  G + G         
Sbjct: 173 GVANVNILGGTTPAYWLFIDPDKLAANNLTANQVVDAVKAQNTTAIGGLVGGPPAAGDQA 232

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             Y +          L     N         + IS  E G     +   +          
Sbjct: 233 YTYPL----------LVQDNGNLLSLEDFENLIISRTETGNLLLLKDVGEVQYGFNNYSS 282

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                 +            + +     +          A + P                S
Sbjct: 283 ASVDRNSHDAVSVAVFQTPESNALDVADAVVKQMDAFAATAPPGVTVSQVYNIGQFIESS 342

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                    +   LVL++LF+ +   +  +V   +I ++++ T A + + G ++   ++ 
Sbjct: 343 VEGVVDALGLAIVLVLLILFLFLQNWRATVVPSLAIPISLVGTFAFIKMFGFSINQLTLL 402

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+VL  GL VD  I+V E + +          +        +  +  + +  +   V + 
Sbjct: 403 GLVLATGLVVDDAIVVIEAVSKNIESGMKPRQAALACMGELFGALVATALVLMAVFVPVA 462

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           F+ G      + FA+T+  SI IS F A++    +   I++  +
Sbjct: 463 FYPGSIGIIYQQFALTIAFSIAISAFNALTFSPMLSGLILKPGQ 506



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 79/219 (36%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R     G         + +          +            + +L       ++  
Sbjct: 862  NLYRTVLIQGAQAVGKSSGQALSSIQALFKKENFNNIGYAFTGLAALQLSAGSASVLVFG 921

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +++Y+ +      +   +  + T+ L +   L F A+  I+ N+ A   ++TLIG +
Sbjct: 922  FGILIVYLVLSAQYESYVTPVIILMTVPLAMLGALAFLAIRSIDLNIYAQVGLVTLIGLA 981

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ + + +  +     +S  D +  S    L   + T++AA    LP+ V    G
Sbjct: 982  AKNGILIVE-VAE--QHLAEGMSASDAVIASAESRLRPILMTAIAALAGFLPLVVANGAG 1038

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                 S    +  G+VVA   S+ +  P  + I     +
Sbjct: 1039 AQSQQSLGTVIFGGLVVATVLSLGVVPPFYVVIKGLEER 1077



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +     + + +  T  F  +FG   N   +  ++   G  V+D +VV + + KN+ 
Sbjct: 368 WRATVVPSLAIPISLVGTFAFIKMFGFSINQLTLLGLVLATGLVVDDAIVVIEAVSKNI- 426

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
              + +  R      + E  G  V T++      +P+A + GS   +   FA+ +AF I 
Sbjct: 427 --ESGMKPRQAALACMGELFGALVATALVLMAVFVPVAFYPGSIGIIYQQFALTIAFSIA 484

Query: 807 VAASSSIFIAAPI 819
           ++A +++  +  +
Sbjct: 485 ISAFNALTFSPML 497



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 64/516 (12%), Positives = 142/516 (27%), Gaps = 42/516 (8%)

Query: 12   SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             M+   G ++              P             L+ G+ L         +   + 
Sbjct: 585  VMVTLAGGIVLTLLAFTALPSAFIPDEDQGYLAGF-FQLQNGASLSETQRVSKEIAAIVN 643

Query: 72   MYSDELRSFLKKEGIGVFSMRQIQNKITL------SFADSRFKENI-ADKVTLFLQGVNS 124
               D L + +   G G       Q  I +          +       AD++   L  ++S
Sbjct: 644  EEGDVLNTSVIS-GYGFNGSSPDQGTILIGLKPLRERPGAANSSFAIADRLNAKLSALSS 702

Query: 125  KLNVDPKKNLLVTTTEK-EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L V  +   +   + +       +    +   +   EQ+  +I+      G +      
Sbjct: 703  ALAVVGQPPAVPGFSAQGGFYFQFNDLTGNYSFNQLDEQAQTLIK-----AGKASGDFSN 757

Query: 184  LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
            L +  I           R   ++G         +       G  +      D       V
Sbjct: 758  LYTQFIPSAPAFGLKVDRA--VMGALNVDYEDAMSTIAVLAGGSYTGLTYEDGQVRNVYV 815

Query: 244  EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
            +   E                  + ++                  +     A  +     
Sbjct: 816  QANAEQREDV-------------ENILSYYVKNRDGDLIQVSQFASSELSSAPPIISHYN 862

Query: 304  TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                +         + SG         L+++          NI       A L   +   
Sbjct: 863  LYRTVLIQGAQAVGKSSG-------QALSSIQALFKKENFNNIGYAFTGLAALQLSAGSA 915

Query: 364  GTCAIVAGLVLIVLFMIVLYGKWGL--VADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   G++++ L +   Y  +    +   ++ L ++  LA L++    L + +  G+V
Sbjct: 916  SVLVFGFGILIVYLVLSAQYESYVTPVIILMTVPLAMLGALAFLAIRSIDLNIYAQVGLV 975

Query: 422  LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
              IGLA  + IL+ E   +   +  S   ++          I  + I AL   + L    
Sbjct: 976  TLIGLAAKNGILIVEVAEQHLAEGMSASDAVIASAESRLRPILMTAIAALAGFLPLVVAN 1035

Query: 480  -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G  + +     +   ++++   ++ +V    + I
Sbjct: 1036 GAGAQSQQSLGTVIFGGLVVATVLSLGVVPPFYVVI 1071


>gi|114704540|ref|ZP_01437448.1| multidrug-efflux transport protein [Fulvimarina pelagi HTCC2506]
 gi|114539325|gb|EAU42445.1| multidrug-efflux transport protein [Fulvimarina pelagi HTCC2506]
          Length = 1074

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/615 (11%), Positives = 169/615 (27%), Gaps = 45/615 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  ++   G L           + +FP+  P               + +   
Sbjct: 8   RRPRLATVVSVVLVIAGALSTFV-----MPVTQFPNVAPPT-------------VSVSAS 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L   +   E +   S          ++++F      +     V+
Sbjct: 50  YPGASAQTVADAIAAPLEEAINGVENMIYMSSTSTNAGQYNLSITFEIGTDPDIAQVNVS 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV-ISHAIEQSMEIIRQRIDQIG 175
             +Q   S+L  D  +  +    +    ++              I+    +       + 
Sbjct: 110 NRVQLATSQLPTDVARQGVTVQAQSPNFLLAMSFYSANPETLGPIDVGAYVSTNITPALS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             E              +    DP ++       + ++      N      + G     +
Sbjct: 170 RVEGVGNAAPLGPADYAMRIWTDPDKMAAFNIAPSDITAAIEAANTVASVGIIGGSPAPE 229

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                Y V  +  +S                   + I     GA                
Sbjct: 230 GQATVYTVTSQGRLSDAEDFDD------------IVIRAQPNGALVRVRDVARVELGAQN 277

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
             ++              +     +   T+         L A         +   +    
Sbjct: 278 YSVNSYSAEGLPSQLVQVNQAPGANALATVAAVEQELDRLSASFPEGLEYDIVYNSTEYV 337

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      +  +VA +V++V+++ +   +  LV   +I ++++ T A L   G T+ + 
Sbjct: 338 SATIEEIIFSLFLVAAIVVVVVYVFLQDWRATLVPALAIPVSLVGTFAFLLAAGFTVNVI 397

Query: 416 SIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  ++L IGL VD  ILV E  +    ++      +           I  + +  L   
Sbjct: 398 TLLALILAIGLVVDDAILVVENCQRVMVQEGLEAKEAAHKAMREVTGPIISTTLVLLAVF 457

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDIN 526
           +   F  G +    + F +T+ +S+L+S   A+++  A+           +  ++     
Sbjct: 458 LPTTFLPGLSGQLYKQFGVTLSISLLLSSLVALTLTPALAAIFLRPPRRSWAPLRLFSRG 517

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +     R     + ++    + +   L         + +G I   V   
Sbjct: 518 LEGVTTFYAGVVGFLVKRVLVALMILASAVGLAAFSFLSLPSALIPTEDQGAILFDVSLP 577

Query: 587 RPVDLSVVRSNLESL 601
               L      L+ +
Sbjct: 578 DASSLQRTDEVLDQV 592



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 63/168 (37%), Gaps = 10/168 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +  +   +  Y+++      W   L  + +L +          LFG   N+ +   ++ L
Sbjct: 869  LAFTLAFIFAYLFLVGQYESWLLPLAVMLSLFIAAAGAATSLFLFGYTSNIYSQIGIVML 928

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM--- 786
            IG +  + +++ +  R         +S  +   K     L   + T++A  + ++P+   
Sbjct: 929  IGLASKNAILIVEFAR---FQQNVGLSITEAAIKGARLRLRAVLMTALAFILGIVPLALA 985

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD-WRAKNARI 833
               G +   +  I    G++ A    IFI   +   +    + K  ++
Sbjct: 986  TGAGAAGRNAIGITAIGGMLAATFIGIFIVPALYALVQRVSQGKPGKL 1033



 Score = 41.6 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 73/213 (34%), Gaps = 6/213 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L +      S+         +   Q    +++A    +E    +++   P    
Sbjct: 267 DVARVELGAQNYSVNSYSAEGLPSQLVQVNQAPGANALATVAAVEQELDRLSASFPEGLE 326

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGF 710
            +      +     I + I  + + A  +++ ++     W   L     + + +  T  F
Sbjct: 327 YDIVYNSTEYVSATIEEIIFSLFLVAAIVVVVVYVFLQDWRATLVPALAIPVSLVGTFAF 386

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   N+  + A++  IG  V+D ++V +       +    +  ++   K++ E  G
Sbjct: 387 LLAAGFTVNVITLLALILAIGLVVDDAILVVENC--QRVMVQEGLEAKEAAHKAMREVTG 444

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIP 800
             + T++      LP        G +   F + 
Sbjct: 445 PIISTTLVLLAVFLPTTFLPGLSGQLYKQFGVT 477


>gi|78184851|ref|YP_377286.1| preprotein translocase subunit SecF [Synechococcus sp. CC9902]
 gi|78169145|gb|ABB26242.1| protein translocase subunit secF [Synechococcus sp. CC9902]
          Length = 328

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/177 (32%), Positives = 103/177 (58%), Gaps = 5/177 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           Q+ + +GP + R+L++  +V ++++   + +YI  R+   +A  A+  L  D+    GFF
Sbjct: 149 QSVDTIGPSLGRQLLQSSLVSLLVAFAGIAVYISFRYDRRYAFLALVALAHDVVIVCGFF 208

Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A  G+    E +     A+LT+ GYSVND VVV+DR+R+  +   + +  +  +D++++ 
Sbjct: 209 AWLGLFFQLEVDSLFAVALLTIAGYSVNDTVVVFDRIRERTQQG-SDLPLKLQVDQAVSA 267

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           TL R++YTS    + +L +  +GGS +  FAI +A G+VV + SSI +A  +L    
Sbjct: 268 TLTRTLYTSGTTLMPLLALVFFGGSTLYWFAIALALGVVVGSWSSIALAPSLLTLWQ 324


>gi|327191930|gb|EGE58914.1| putative acriflavin resistance protein (transporter protein)
           [Rhizobium etli CNPAF512]
          Length = 1109

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/620 (11%), Positives = 177/620 (28%), Gaps = 45/620 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  IG+            + RFP+                  +     
Sbjct: 9   RNPIAPLLAFCLLIFIGI-----QSFNTLPITRFPNIDVPLV---------SISVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    ++  + F      E     V   +  
Sbjct: 55  SPAELEMQVTKEIEDAIASITGIDEIQSTVTDGSSQTNVMFRMEVPTEQAVQDVKDAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    +  ++     +  +I     +         E S  +       +       
Sbjct: 115 IRSDLPATAETPIVTKVDVEGQAIQTFAVSSPD--MSLEELSWFVDDTIKRALQGQAGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E  P++L     T A ++      N         V     +     
Sbjct: 173 RVDRYGGAEREVRIELTPAKLDAHGITAASVNQQLRGTNVDLGSGRGQVAGSEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  E++   +      F   +   V+  +++E  +   F  T               
Sbjct: 233 DARNVAELADTTIALPNGRFVKLSDLGVIKDTYEEPKSFSRFNDTP-------------- 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +   ++      +        P     + + +V    G+   
Sbjct: 279 -------VVTFGVFRSKGASEVSVAETVAQSLDKVRADNPNVKIEMIDDSVYFTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+ + +   +  L++  ++ L+ I T  ++ ++G +L L S   + 
Sbjct: 332 AIHTLLEGALLAVIVVLLFLRNWRATLISAIALPLSAIPTFWVMDMMGFSLNLVSFLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    +  ++ + +           +  +  T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIKMGKTPYRAAIEAADEIGLAVIATTFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIR-----YKKMKSIDINPLSRFFL 533
           G   +    F +T+  S+  S+  A  I   M  +++R          +  +       L
Sbjct: 452 GIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMRAEDGVDDHHDNDGLLMKGYTRL 511

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +       + R     V +           +F  G     +    I L V       L  
Sbjct: 512 VTGTTRKWYWRYTTLIVALLFTVGSVISLFMFVPGSFLPPEDASRIVLSVELPPNARLDD 571

Query: 594 VRSNLESLQIGDISFQNFDG 613
                +++          + 
Sbjct: 572 TEKTTDAIYDRVKDINGVES 591



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 68/233 (29%), Gaps = 7/233 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       SF  F+        +    G S                    +       
Sbjct: 260 VIKDTYEEPKSFSRFNDTPVVTFGVFRSKGASEVSVAETVAQSLDKVRADNPNVKIEMID 319

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +       I  ++  + +A+++ +     W   L +   L L    T     + G
Sbjct: 320 DSVYFTYGNYEAAIHTLLEGALLAVIVVLLFLRNWRATLISAIALPLSAIPTFWVMDMMG 379

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL +  A+    G  V+D +V  + +    +      +      ++ +E     + T
Sbjct: 380 FSLNLVSFLALTLATGILVDDAIVEIENI---ARHIKMGKTPYRAAIEAADEIGLAVIAT 436

Query: 776 SMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +       +P++   G        F + +AF +  +   +  I   +  ++  
Sbjct: 437 TFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMR 489



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + +L L I        +     ++  +  +L L+G    + +++ D   +  
Sbjct: 898  DVIQPFTILFSLPLAIGGVAAALIITSNPLSMPVMIGILMLMGIVTKNAILLVDFAIEMR 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  ++  + + ++  +     + TS+A    +LP A+    GGS     AI +  GI
Sbjct: 958  HQ---GMARVEAMVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGI 1014

Query: 806  V 806
            +
Sbjct: 1015 I 1015


>gi|301329921|ref|ZP_07222642.1| putative ATP synthase F0, A subunit [Escherichia coli MS 78-1]
 gi|300844020|gb|EFK71780.1| putative ATP synthase F0, A subunit [Escherichia coli MS 78-1]
          Length = 1040

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYSGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGQGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLEERDD 635



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|124267324|ref|YP_001021328.1| putative transporter lipoprotein transmembrane [Methylibium
           petroleiphilum PM1]
 gi|124260099|gb|ABM95093.1| putative transporter lipoprotein transmembrane [Methylibium
           petroleiphilum PM1]
          Length = 1028

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/520 (13%), Positives = 154/520 (29%), Gaps = 48/520 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L++++  +GL+           +  FP                   + +   
Sbjct: 11  RNPIPAILLFALLTVLGLMS-----FRAMKIQNFPDIDLPM-------------VTVTAA 52

Query: 62  EDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   L+       +   + ++        ++     IT+ F   +  +   D V  
Sbjct: 53  LPGASPSQLETEVARKIENSVASVQGVKHLYTKVQDGVATITVEFRLEKPIQEAVDDVRD 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L VD +  ++       + I+      D++   A   S  +       +   
Sbjct: 113 AVSRVRSDLPVDLRDPVIAKVDLAGMPILTYTVASDRMDDEA--LSWFVDNTVAKTLLNV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +          +  ++  E DP RL  L  + A +S           G    V     S 
Sbjct: 171 QGVGAVARVGGVTREIAVELDPGRLLALNASAADISRQLRQVQQEAAGGRTDVGGAEQSV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V+   E+  + +                         RR       ++   +A  
Sbjct: 231 RTLGTVQSAEELGRVQIAL--------------------SDGRRIRLDEVASVRDTVAEQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L    +     +                    L A    I +       V   + 
Sbjct: 271 RSAALLDGRPVVGFEITRSRGAGEVDVDAGVKRALQRLLAAHPEITV-SEAFNFVDPVVD 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +           A L ++V++  +   +  LV+  ++ L+++     + LLG T+   ++
Sbjct: 330 NYEGSMKLLLEGALLAVVVVWFFLRDWRSTLVSATALPLSILPAFVGMHLLGFTINGVTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +  
Sbjct: 390 LALSLVVGILVDDAIVEIENIMRHLRMGKTPYQAAMEAADEIGLAVIATTFTLVAVFLPT 449

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            F     G     F  T  +++  S+  A  +   M  ++
Sbjct: 450 AFMSGVAGKFFVQFGWTAAIAVFASLVVARMLTPMMAAYL 489



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 81/252 (32%), Gaps = 6/252 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G +Q+ +   R + L  V S  +++     +              + +    V     ++
Sbjct: 243 GRVQIALSDGRRIRLDEVASVRDTVAEQRSAALLDGRPVVGFEITRSRGAGEVDVDAGVK 302

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
              +++    P  T+         +         + +  + +A+++  +    W   L +
Sbjct: 303 RALQRLLAAHPEITVSEAFNFVDPVVDNYEGSMKLLLEGALLAVVVVWFFLRDWRSTLVS 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L I        L G   N   + A+  ++G  V+D +V  + +   M+      +
Sbjct: 363 ATALPLSILPAFVGMHLLGFTINGVTLLALSLVVGILVDDAIVEIENI---MRHLRMGKT 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
                 ++ +E     + T+       LP A   G        F    A  +  +   + 
Sbjct: 420 PYQAAMEAADEIGLAVIATTFTLVAVFLPTAFMSGVAGKFFVQFGWTAAIAVFASLVVAR 479

Query: 814 FIAAPILLFIYD 825
            +   +  ++  
Sbjct: 480 MLTPMMAAYLLR 491



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 72/177 (40%), Gaps = 6/177 (3%)

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
             T +   +   EL     + ++   + + I + + FK +   +  +  L+L +       
Sbjct: 834  QTTVGDAEAMAELFESFGLAMLTGVMCIYIVLVLLFKDFVQPVTILAALVLSVPGAFLAL 893

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             +     ++ ++  ++ L+G +  + +++ +     +      +S  D +  + ++    
Sbjct: 894  FITHTALSMPSMIGLIMLMGIATKNSILLVE--YAIVARRDRGLSRWDALIDACSKRARP 951

Query: 772  SVYTSMAAFISVLPMAV-WGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             V T++A    ++P+A+  G         AI +  G++ +   S+ +   +  ++ D
Sbjct: 952  IVMTTVAMGAGMMPIAIGLGVDPSFRAPMAIVVIGGLITSTFLSLLVIPVVFTYVDD 1008


>gi|108804174|ref|YP_644111.1| protein translocase subunit secF [Rubrobacter xylanophilus DSM
           9941]
 gi|108765417|gb|ABG04299.1| protein translocase subunit secF [Rubrobacter xylanophilus DSM
           9941]
          Length = 292

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 85/290 (29%), Positives = 140/290 (48%), Gaps = 11/290 (3%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-LANRPVDLSVVRSNL 598
           + F+R       IS +     I  +    L +GIDF+GG+Q     A+R +    +R  L
Sbjct: 1   MDFVRRWRLWFAISGILLAAGILAIALGRLEFGIDFQGGVQFTAADASRRLGEGELRDQL 60

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                 D   Q    E   +         +    R ++                +   V 
Sbjct: 61  PPFVRQDAVIQRLGEEGYEVRTPVLNRQQTNQVQRAVQEALGAE---------VSVTSVS 111

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P    ++  + +  V  S + ++ +I +R+++ FAL A+  L+ DI  T+GF+A+ G E 
Sbjct: 112 PSFGEQVRDQALQAVAASLLLIVFFITVRYEFAFALAAMAALVHDILMTVGFYAIVGREV 171

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSM 777
           NL  V AVLT++GYS+ D V+++DR+R+N   +      F ++I+ SI + + RS+YTS+
Sbjct: 172 NLVTVVAVLTVLGYSLYDTVIIFDRIRENSPSVGYNRRRFDEVINTSIRQVIRRSIYTSV 231

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  I +  + V+G S +  FA  +  GIV    SSIFIA+PIL     WR
Sbjct: 232 STLIPITALLVFGRSTLTDFAFALLVGIVAGTYSSIFIASPILSLYKAWR 281


>gi|325275956|ref|ZP_08141794.1| acriflavin resistance protein [Pseudomonas sp. TJI-51]
 gi|324098907|gb|EGB96915.1| acriflavin resistance protein [Pseudomonas sp. TJI-51]
          Length = 1030

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/581 (12%), Positives = 156/581 (26%), Gaps = 37/581 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPVAPLPEADFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       + L F   +  +  A +V   +    ++L  D              S
Sbjct: 82  TQMTSSSALGSTTLVLQFTLDKNIDTAAQEVQAAINTATARLPQDLPNPPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL             + S         Q+   E       + ++   +  +  P +L  
Sbjct: 142 PVLVMTVSSS-QMPGNDLSDYAETLLARQLSQIEGVGLINITGQLRPAIRVQAQPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           +  T A +                              +          ++   AN    
Sbjct: 201 IGLTLADLRQAIA--------------------QTSLNLAKGALYGEHSVSTLAANDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +          +      +                     +   +   +   T
Sbjct: 241 HPEDYAQLIVSYRNGSPVYLRDVATVVSGAENAYVKAWSGDQPGLNLVIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V +        S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRVMAALPKLQEMLPASVEVSVLQDRTQTIRASLHEVELTLMIAVALVIGVMALFLRQW 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              LV    + +++I + AL+ +LG +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLVVSSVLGVSLIASCALMYVLGFSLNNLTLVAIVISVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
                 +   G      T+   +++ + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GDDSRTAALKGAGEIGFTVVSISLSLIAAFIPLLFMGGVVGRLFKEFALTATSTILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            ++++   +    +                      +       R      ++  ++  +
Sbjct: 481 VSLTLAPTLCALFMHRPPGGHQGGFGERLVNWYERGLNRALAHQRVTLGVFAVTLALAVV 540

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
             +      + +   G I     A   V    +    ++L 
Sbjct: 541 GYVAIPKGFFPLQDTGFILGTSEAAADVSYPSMIEKHQALA 581



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 81/240 (33%), Gaps = 10/240 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R     +   + ++          + L             ++ V   + ++  +     
Sbjct: 260 LRDVATVVSGAENAYVKAWSGDQPGLNLVIFRQPGANIVDTVDRVMAALPKLQEMLPASV 319

Query: 654 TEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
              V    ++ +        + ++I+   ++  + +  + W   L   + L + +  +  
Sbjct: 320 EVSVLQDRTQTIRASLHEVELTLMIAVALVIGVMALFLRQWSATLVVSSVLGVSLIASCA 379

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              + G   N   + A++  +G+ V+D +VV + +    +        R    K   E  
Sbjct: 380 LMYVLGFSLNNLTLVAIVISVGFVVDDAIVVVENIH---RHLEAGDDSRTAALKGAGEIG 436

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              V  S++   + +P+   GG V      FA+     I+++   S+ +A  +       
Sbjct: 437 FTVVSISLSLIAAFIPLLFMGGVVGRLFKEFALTATSTILISVVVSLTLAPTLCALFMHR 496



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 77/197 (39%), Gaps = 6/197 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + ++++   E+    +I        +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 820  DAVSILERTQRELGMPDSISGNFQGAAQAFQSSLASQPWLILAALVAVYIILGVLYESFV 879

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L      G +F++  +  ++ LIG    + +++ D         
Sbjct: 880  HPLTIISTLPSAGLGALILLWAMGQDFSIMGLIGIVLLIGIVKKNGILLID--FALQAQR 937

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +S    I ++        + T++AA +  +P+      G  +     I +  G++V+
Sbjct: 938  QQGLSPEQAIHQACLTRFRPIIMTTLAALLGAVPLMFGFGTGAELRQPLGIAVVGGLLVS 997

Query: 809  ASSSIFIAAPILLFIYD 825
             + ++F    I L +  
Sbjct: 998  QALTLFTTPVIYLALER 1014


>gi|331673601|ref|ZP_08374364.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli TA280]
 gi|331068874|gb|EGI40266.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli TA280]
          Length = 1040

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGIIS-----YRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|218695697|ref|YP_002403364.1| multidrug efflux system subunit MdtB [Escherichia coli 55989]
 gi|254810275|sp|B7L9U8|MDTB_ECO55 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|218352429|emb|CAU98203.1| multidrug efflux system, subunit B [Escherichia coli 55989]
          Length = 1040

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGQGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLEERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|23501184|ref|NP_697311.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella suis 1330]
 gi|254703646|ref|ZP_05165474.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella suis bv. 3 str.
           686]
 gi|256060429|ref|ZP_05450600.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella neotomae 5K33]
 gi|256368738|ref|YP_003106244.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella microti CCM 4915]
 gi|261324416|ref|ZP_05963613.1| acriflavin resistance protein [Brucella neotomae 5K33]
 gi|261754284|ref|ZP_05997993.1| acriflavin resistance protein [Brucella suis bv. 3 str. 686]
 gi|23347062|gb|AAN29226.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella suis 1330]
 gi|255998896|gb|ACU47295.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella microti CCM 4915]
 gi|261300396|gb|EEY03893.1| acriflavin resistance protein [Brucella neotomae 5K33]
 gi|261744037|gb|EEY31963.1| acriflavin resistance protein [Brucella suis bv. 3 str. 686]
          Length = 1043

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 158/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++ + +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   ++     +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFREFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 69/164 (42%), Gaps = 7/164 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G     +    +  G+ +A  +++++     L +  +    
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTKPK 1021


>gi|320172682|gb|EFW47917.1| Multidrug transporter MdtB [Shigella dysenteriae CDC 74-1112]
          Length = 1040

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/652 (10%), Positives = 171/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++  F++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|293372079|ref|ZP_06618470.1| heavy metal efflux pump, CzcA family [Bacteroides ovatus SD CMC 3f]
 gi|299144584|ref|ZP_07037652.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 3_1_23]
 gi|292632871|gb|EFF51458.1| heavy metal efflux pump, CzcA family [Bacteroides ovatus SD CMC 3f]
 gi|298515075|gb|EFI38956.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 3_1_23]
          Length = 1052

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/569 (12%), Positives = 167/569 (29%), Gaps = 41/569 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     T   +S      N +  G  F +     +   + 
Sbjct: 172 TVSISGAPQREIQVYCDPNKLEAYHLTIETISSIIGAENKNIPGGNFDIGSETYALRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  +++ + +                            F      I   +       
Sbjct: 232 EFDDSRQLADVVVGTH--------------------NGANVFLRDVARIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKIGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAISGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G +    +     M   + IS   A+S+   +    +   KK   +     +      D 
Sbjct: 452 GMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKPSKMFKLFFTPIEKALDG 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT 566
           +   + +   W V    +  +  I     
Sbjct: 512 LDTWYAKMLNWAVRHRPIVIVGCIAFFVV 540



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 90/245 (36%), Gaps = 7/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   +V  +    +SV  ++ +     ++ + +P     
Sbjct: 256 DVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKI 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +         I      V+ + + ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GVIVDTSDNILNTIDSLTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AISGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++       P+ +     G +       M   + ++  +++ +   +   +   + 
Sbjct: 433 VIASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQK 492

Query: 829 KNARI 833
           K +++
Sbjct: 493 KPSKM 497



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 8/250 (3%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                   SV   ++  +            ++  +V +      +     V    K     
Sbjct: 782  IYNAQGQSVRVKDVGKVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNKVIDKM 841

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
             +P                     G + ++I  + + I +  +F+   +    + +L   
Sbjct: 842  DLPGEVTIQISGSYEDQQDSFRDLGTLAILI-VVLVFIVMAAQFESLTYPFIIMFSLPFA 900

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
             +  L          ++ ++   + LIG  V + +V+ D +          ++  + +  
Sbjct: 901  FSGVLMALFFTNSTLSVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGLAVLNSVVT 957

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + T+    + ++PMA+ GG    +    AI +  G+ ++   ++ +   + 
Sbjct: 958  AGKSRLRPVLMTTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTISTVLTLILIPTLY 1017

Query: 821  LFIYDWRAKN 830
                    KN
Sbjct: 1018 CVFAGTGIKN 1027


>gi|218554642|ref|YP_002387555.1| multidrug efflux system subunit MdtB [Escherichia coli IAI1]
 gi|300818927|ref|ZP_07099132.1| putative ATP synthase F0, A subunit [Escherichia coli MS 107-1]
 gi|300821820|ref|ZP_07101965.1| putative ATP synthase F0, A subunit [Escherichia coli MS 119-7]
 gi|300955098|ref|ZP_07167502.1| putative ATP synthase F0, A subunit [Escherichia coli MS 175-1]
 gi|307138733|ref|ZP_07498089.1| multidrug efflux system subunit MdtB [Escherichia coli H736]
 gi|309792954|ref|ZP_07687382.1| putative ATP synthase F0, A subunit [Escherichia coli MS 145-7]
 gi|331642695|ref|ZP_08343830.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli H736]
 gi|331668771|ref|ZP_08369619.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli TA271]
 gi|226700671|sp|B7M458|MDTB_ECO8A RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|218361410|emb|CAQ98997.1| multidrug efflux system, subunit B [Escherichia coli IAI1]
 gi|300317941|gb|EFJ67725.1| putative ATP synthase F0, A subunit [Escherichia coli MS 175-1]
 gi|300525662|gb|EFK46731.1| putative ATP synthase F0, A subunit [Escherichia coli MS 119-7]
 gi|300528546|gb|EFK49608.1| putative ATP synthase F0, A subunit [Escherichia coli MS 107-1]
 gi|308123240|gb|EFO60502.1| putative ATP synthase F0, A subunit [Escherichia coli MS 145-7]
 gi|320198766|gb|EFW73366.1| Multidrug transporter MdtB [Escherichia coli EC4100B]
 gi|323940854|gb|EGB37042.1| AcrB/AcrD/AcrF family protein [Escherichia coli E482]
 gi|331039493|gb|EGI11713.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli H736]
 gi|331063965|gb|EGI35876.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli TA271]
          Length = 1040

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/652 (10%), Positives = 171/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++  F++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|215487298|ref|YP_002329729.1| multidrug efflux system subunit MdtB [Escherichia coli O127:H6 str.
           E2348/69]
 gi|254810274|sp|B7UTB3|MDTB_ECO27 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|215265370|emb|CAS09766.1| multidrug efflux system, subunit B [Escherichia coli O127:H6 str.
           E2348/69]
          Length = 1040

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYQALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFERIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGQGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|90425072|ref|YP_533442.1| hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
 gi|90107086|gb|ABD89123.1| Hydrophobe/amphiphile efflux-1 HAE1 [Rhodopseudomonas palustris
           BisB18]
          Length = 1050

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/679 (10%), Positives = 181/679 (26%), Gaps = 38/679 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  ++  +GLL      L +  + + P  +P                +     
Sbjct: 9   RPRFAIVIAILMTIVGLLA-----LTRIPVAQLPDIVPPQVQ---------VTTLYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +     + K      S     +  +T+SF      +     V   +Q 
Sbjct: 55  AEVLESTVAQPLEAQIIGVDKMIYMKSSSGNDGSYTLTVSFELGSNPDINTVNVNNRVQT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   +    +    + +   +        +  +       +D++  +    
Sbjct: 115 SLSQLPAEVQLQGVTVKKKSSSILQVVMLSS-DGKYDPLFMTNFATINVLDELARTPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 R+   +    D  RL  L    + +       N        G R +      Q 
Sbjct: 174 SASLFGRLNYSMRIWFDTIRLTSLGLVPSDVVKAIQSQNIQAPVGRIGARPVSSDQQLQI 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ +  +S                +    +                 +           
Sbjct: 234 NVQTQGRLS-------------SPEQFKNVVIRANPDGSVLRVGDVARVEMGAQNEDVEA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +              +R                     +   
Sbjct: 281 RLNTSPSVAIGIYLAPGANALNASTAVNATLDKIRGRVPAGLKVRSIYDATTIVNETVDE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  +V   ++ +++I + A+L +LG ++   S+  +V
Sbjct: 341 VLKTLVEAFVLVAIVVFVFLGNLRATIVPVIAVPVSIIASYAVLLVLGYSINTISLLALV 400

Query: 422 LGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +          S   +      +    I    +      V + F
Sbjct: 401 LAIGIVVDDAIVVVENVERIMEEEPEISAADATKKAMRQVTGPIIAITMVLFSVFVPIGF 460

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDINPLSRFF 532
             G +    R FA+T+  ++ +S   A+++  A+    +R+   +     I         
Sbjct: 461 IPGISGELFRQFAVTISAAMFVSAINALTLSPALCAVFLRHSPHRGALARIGHGIDKVRN 520

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +      A    + +        +    T       + +G   + +       + 
Sbjct: 521 GYAFVVHKSLRMAAISLLLVGGCALGSGLLSRITPTGFLPEEDQGAFFINIQLPESASVE 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                +  L+               +         +     V+  +K        + + Q
Sbjct: 581 RTSRAVAQLEDILGKMPQVKDTIAVVGFSILDQYGASNSALVIVTLKPFENRRGAMDSAQ 640

Query: 653 NTEIVGPKISRELIRKGIV 671
                    + ++    ++
Sbjct: 641 ALIAKTFGAATQIKAATVI 659



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 73/222 (32%), Gaps = 9/222 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G +       + +                        +E    G   VI++
Sbjct: 814  NNYRSVTVMGSTAPGVSSGDAMAAMEKVAANTLPSGYAFEWTGTSFQEQKVGGQTPVILA 873

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +  + ++ + +        + G+  +L A   ++ LI  +
Sbjct: 874  LAVLFAYLFLVALYESWVIPIPVLLSVTVGVLGAFFGLLVSGLALDLYAQIGLVVLIAMA 933

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +  ++  +      S  +  +          + TS+A    + P+    G+ 
Sbjct: 934  AKNGILIVEFAKEQREA---GASIIEAAETGAKLRFRAVMMTSIAFIAGLAPLVWADGAA 990

Query: 794  ---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 S + P+  G++ A+   IF+   + +     R + AR
Sbjct: 991  KIARRSVSTPVFAGMLAASLLGIFVIPMLYVTFQTLRERAAR 1032



 Score = 51.2 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 87/212 (41%), Gaps = 13/212 (6%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    L+ ++ ++   + + +I +   +  +   E+++  +   ++ AI + +++   
Sbjct: 304 STAVNATLDKIRGRVPAGLKVRSIYDATTIVNETVDEVLKTLVEAFVLVAIVVFVFLG-- 361

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRM 744
                 +  +  + + I  +     + G   N  ++ A++  IG  V+D +VV    +R+
Sbjct: 362 -NLRATIVPVIAVPVSIIASYAVLLVLGYSINTISLLALVLAIGIVVDDAIVVVENVERI 420

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
            +        IS  D   K++ +  G  +  +M  F   +P+       G +   FA+ +
Sbjct: 421 MEE----EPEISAADATKKAMRQVTGPIIAITMVLFSVFVPIGFIPGISGELFRQFAVTI 476

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +  + V+A +++ ++  +             +
Sbjct: 477 SAAMFVSAINALTLSPALCAVFLRHSPHRGAL 508


>gi|323183856|gb|EFZ69247.1| multidrug resistance protein mdtB [Escherichia coli 1357]
          Length = 1023

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/652 (10%), Positives = 171/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 2   RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 47

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 48  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 107

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 108 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 166

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 167 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 206

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 207 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 266

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 267 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 326

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++  F++ L++I T A++  L  ++   ++  + +
Sbjct: 327 QFELMMAIALVVMIIYLFLRNIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTI 386

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 387 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 446

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 447 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 506

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 507 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 566

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 567 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 618



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 330 LMMAIALVVMIIYLFLR-NIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 388

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 389 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 445

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 446 DIVGRLFREFAITLAVAILISAVVSLTLTP 475


>gi|313649879|gb|EFS14299.1| multidrug resistance protein mdtB [Shigella flexneri 2a str. 2457T]
 gi|332766427|gb|EGJ96636.1| acrB/AcrD/AcrF family protein [Shigella flexneri 2930-71]
          Length = 835

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 168/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 2   RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 47

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +        +V   +   
Sbjct: 48  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLNVAEQEVQAAINAA 107

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 108 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 166

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 167 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 206

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 207 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 266

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 267 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 326

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 327 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 386

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 387 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 446

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 447 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 506

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 507 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 566

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 567 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 618



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 330 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 388

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 389 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 445

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 446 DIVGRLFREFAITLAVAILISAVVSLTLTP 475


>gi|270264667|ref|ZP_06192932.1| multidrug resistance protein MdtC [Serratia odorifera 4Rx13]
 gi|270041350|gb|EFA14449.1| multidrug resistance protein MdtC [Serratia odorifera 4Rx13]
          Length = 1012

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/648 (10%), Positives = 167/648 (25%), Gaps = 38/648 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++      +       +P                     L   +
Sbjct: 10  RPVATTLLTLAIAISGVIGFSLLPVSPLPQVDYPVIS--------------ISASLPGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               ++ L F  +R     A  V   +   
Sbjct: 56  PETMASSVATPLERALGRIAGVNEMTSMSSLGSTRVILQFDLNRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       +   +I  +E    
Sbjct: 116 QSLLPTGMPNRPSYRKVNPSDAPIMI-LTLTSETYSQGQLYDFASTKLAQKIAQTEGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P+ L     +   +       N  +          R        
Sbjct: 175 VSVGGSSLPAVRVELNPTALFNQGVSLDAVRQAISGANVRRPQGSVENPQQRWQIQANDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++                           +                 +   +  V +  +
Sbjct: 235 LKTA--------------------NAYRPLIIHYNNGSAVRLGDVAEVKDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A        S     +   T++        L+          + +        S +  
Sbjct: 275 TNAKPAIILAISRAPDANIIETVDRIRAELPTLQDSIPASIQLNIAQDRSPTIRASLAEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +  I  GLV++V+F+ +  G+  L+   ++ +++I + A + L G +L   S+  + +
Sbjct: 335 EQSLVIAIGLVILVVFIFLRSGRATLIPAVAVPVSLIGSFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E I            +   G      T+   +++ +   + L    G
Sbjct: 395 ATGFVVDDAIVVLENISRHVEAGMKPLNAALQGVREVGFTVLSMSVSLVAVFIPLLLMDG 454

Query: 483 GA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R FA+T+ +SI +S+  ++++   M  +++R++  ++          L+     
Sbjct: 455 LPGRLFREFAVTLSVSIGLSLIVSLTLTPMMCAYLLRHQPARAQRRIRGFGKMLLALQQG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                    G    +L    +   L               Q        +      S   
Sbjct: 515 YGRSLNWVLGHSRWVLAIFFATIALNVWLYVSIPKTFFPEQDTGRLMGFIQADQSISFQA 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                +   +    +K+      +  G       +   +K        
Sbjct: 575 MRVKLEDFMKIVREDKDVENVTGFTGGSRTNSGSMFISLKPLSVRSDD 622



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 65/165 (39%), Gaps = 7/165 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             ++I+   +++ ++I  +     L     + + +  +     L G   N  ++ A+   
Sbjct: 336 QSLVIAIGLVILVVFIFLRSGRATLIPAVAVPVSLIGSFAAMYLCGFSLNNLSLMALTIA 395

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            G+ V+D +VV + +    +     +   +   + + E     +  S++     +P+ + 
Sbjct: 396 TGFVVDDAIVVLENI---SRHVEAGMKPLNAALQGVREVGFTVLSMSVSLVAVFIPLLLM 452

Query: 789 --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G +   FA+ ++  I ++   S+ +   +  ++   +   A
Sbjct: 453 DGLPGRLFREFAVTLSVSIGLSLIVSLTLTPMMCAYLLRHQPARA 497



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/208 (16%), Positives = 88/208 (42%), Gaps = 6/208 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     V++ IT +   ST++       ++ ++ ++  +  +  +   
Sbjct: 803  TISFNLPDGGSLSDATAAVERTITALGVPSTVRGAFAGTAQVFQDTLKSQLFLIAAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    LFG  F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGVLYESYIHPLTILSTLPSAGVGALLALELFGAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     I  R+ I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALDAQRNG--GIGAREAIFQACLLRFRPIMMTTLAALFGALPLVLTSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFI 823
               I +A G++++   +++    + L +
Sbjct: 981  PLGITIAGGLIMSQLLTLYTTPVVYLIL 1008


>gi|254688591|ref|ZP_05151845.1| Acriflavin resistance protein [Brucella abortus bv. 6 str. 870]
 gi|256256839|ref|ZP_05462375.1| Acriflavin resistance protein [Brucella abortus bv. 9 str. C68]
 gi|260754061|ref|ZP_05866409.1| acriflavin resistance protein [Brucella abortus bv. 6 str. 870]
 gi|260883088|ref|ZP_05894702.1| acriflavin resistance protein [Brucella abortus bv. 9 str. C68]
 gi|297247688|ref|ZP_06931406.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella abortus
           bv. 5 str. B3196]
 gi|260674169|gb|EEX60990.1| acriflavin resistance protein [Brucella abortus bv. 6 str. 870]
 gi|260872616|gb|EEX79685.1| acriflavin resistance protein [Brucella abortus bv. 9 str. C68]
 gi|297174857|gb|EFH34204.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella abortus
           bv. 5 str. B3196]
          Length = 1043

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 157/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG    F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFHEFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 65.9 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 73/220 (33%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++ + +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   +      +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFHEFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 68/164 (41%), Gaps = 7/164 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+     ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYTQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G     +    +  G+ +A  +++++     L +  +    
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTKPK 1021


>gi|217970230|ref|YP_002355464.1| acriflavin resistance protein [Thauera sp. MZ1T]
 gi|217507557|gb|ACK54568.1| acriflavin resistance protein [Thauera sp. MZ1T]
          Length = 1023

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/491 (13%), Positives = 134/491 (27%), Gaps = 31/491 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +  +P+                          + V   +    ++  + ++   +
Sbjct: 29  YSRLTVREYPNIDEPVVT---------VDTRYRGASAEIVESQVTKPLEDSLAGIEGVDV 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                RQ +++IT+ F   R  ++ A  V   +  V  +L  D  + ++         I+
Sbjct: 80  LSSISRQERSQITVRFRVERSADSAAADVRDRVSRVRQRLPDDIDEPVIAKVEADASPII 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               + D      +E S    R    ++                  +    D  RL    
Sbjct: 140 WVAFSSD--RHAPMEISDFANRVIKPRLQTLPGAADARLFGDRRSAMRVWLDRDRLAAFG 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T  ++       N          R    +   Q  +    +                  
Sbjct: 198 LTVQEVEDAIRRQNVELPAGRIESREREFAVVAQTDLARPEQ-----------------F 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             +V    D   A          +                         ++  +      
Sbjct: 241 GAIVLRQGDTADAYPVRIRDVGRVEVAPESERTSVRFMGRPAVSIGLIKQSVANPLDLKR 300

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
               +   L+A         +          S      T      LV  V    +   + 
Sbjct: 301 GLDEMMPRLQAELPEGMSMTIANDTTVFIERSIDAVFSTIWEAVLLVAAVCLFFLRNWRA 360

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            LV   +I ++++    L+ +LG ++   ++  +VL IGL VD  I+V E I        
Sbjct: 361 MLVPLVTIPVSLVGAFTLMLVLGFSINTLTLLALVLAIGLVVDDAIVVLENIYRHIEDGM 420

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTA 503
               +   G       +    IT       + F  G        FA+T+  ++++S F A
Sbjct: 421 EPVAAAFKGAREIGFAVVAMTITLAAVYAPVAFMSGRTGKLFTEFALTLAGAVIVSGFVA 480

Query: 504 ISIVRAMMIFI 514
           +++   M   +
Sbjct: 481 LTLSPMMCSKL 491



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 61/153 (39%), Gaps = 7/153 (4%)

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + +  +F+ +      + T+ L +T  LG   L G   N+ +   ++TL+G      +
Sbjct: 862  IYLVLAAQFESFRDPFIIMLTVPLSMTGALGALWLTGGTLNVYSQIGLVTLVGLITKHGI 921

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ +      +L     + R+ + ++    L   + T+ A  +  LP+A+    G     
Sbjct: 922  LIVEFAN---QLREHGHALREAVVEAAVLRLRPILMTTGAMVLGSLPLALATGAGAESRQ 978

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +  G+++    ++F+   +   +     
Sbjct: 979  QIGWVIVGGLLIGTFFTLFVVPTVYTLLARRER 1011



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           ++    + +   R L+ +  ++   +P                  I      +  + + +
Sbjct: 288 IKQSVANPLDLKRGLDEMMPRLQAELPEGMSMTIANDTTVFIERSIDAVFSTIWEAVLLV 347

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
                   + W   L  + T+ + +        + G   N   + A++  IG  V+D +V
Sbjct: 348 AAVCLFFLRNWRAMLVPLVTIPVSLVGAFTLMLVLGFSINTLTLLALVLAIGLVVDDAIV 407

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---S 796
           V + +    +     +       K   E     V  ++       P+A   G        
Sbjct: 408 VLENI---YRHIEDGMEPVAAAFKGAREIGFAVVAMTITLAAVYAPVAFMSGRTGKLFTE 464

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           FA+ +A  ++V+   ++ ++  +   +      + RI
Sbjct: 465 FALTLAGAVIVSGFVALTLSPMMCSKLLRHEPTHGRI 501


>gi|254445023|ref|ZP_05058499.1| RND transporter, HAE1/HME family, permease protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198259331|gb|EDY83639.1| RND transporter, HAE1/HME family, permease protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 1023

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/684 (11%), Positives = 198/684 (28%), Gaps = 64/684 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++  +G +        +  +D FPS                 +      
Sbjct: 9   KRPIFTTMVTLIVVVLGAVSLA-----RLKIDLFPSIELPTVT---------INTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E+ S +           + ++++ + F+     ++ A ++   L+ 
Sbjct: 55  SPEVMETLVTQIIEEIVSTVPGVEEVTSRSSEGRSRVRVRFSWGTNIDSAALELQATLED 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  + ++  +         +V+   + D      IE +  I  +   +        
Sbjct: 115 EINELPDNIERPRVSKFDVDSFPVVILGVSGD---IDPIELTDIINNEIRFRFSRVPGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++  E D  RL+ L     ++       N  +                  
Sbjct: 172 QVDLWGGFNREIRVEIDRQRLQALGIPLNQILQALRDSNLDRPSGS-------------- 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G +     A    +    + +   D              +           
Sbjct: 218 ------IQEGRYEVSLRAPAQFQNLAQIRNTVVDTRDGTVVTLDQVATVRDTYEKETRIV 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      +     +   +     +               I +  V   +      S   
Sbjct: 272 RVNGVQGIRVAIRKQDNANTVEVSQAILEEIDRTNKDFPLINIVPVS-NSGNFIERSIQN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +     GL ++VL   +   +  LV   +I +++I T ALL   G TL L S+ G+ 
Sbjct: 331 VARSVLYGGGLAILVLLFFLRDWRSTLVISLAIPISIISTFALLYFGGFTLNLMSLGGLA 390

Query: 422 LGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           LG+G+ VDS+I+V E I      + +    +   G     + I  S IT L+  + L F 
Sbjct: 391 LGVGMMVDSSIVVLENIFRRRDEEGEPPQIASSNGAREVAAAIVASTITTLVIFLPLIFV 450

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
            G +    R  A T+  S++ S+  ++S+V  +   +          +    + +     
Sbjct: 451 PGVSGILFRELAYTVSFSLICSLVVSLSLVPMLSAKLLRANISSDEKKKSPFRKLSETSE 510

Query: 529 SRFFLIPDCIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             F  +         +     R+  +  +    +                 +G + +   
Sbjct: 511 RWFQSLELGYKRLLNKALRHRRWVLISAASTLVLSYFLAPLISSEFMPPSDEGEVNVWSR 570

Query: 585 ANRPVDLSVVRSNLESLQIG---------DISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           A     L +V +  + ++                      +    L        +   + 
Sbjct: 571 AETSTRLEIVDTLAKRIEEIAIPAVPEAVSHVTNVRGDGASINFNLVPASQRQRSNEEIA 630

Query: 636 EMVKKKITEIVPLSTIQNTEIVGP 659
           + +++ +   +P          G 
Sbjct: 631 QDLRQLLNGKIPGMEAGAWAPRGQ 654



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 79/245 (32%), Gaps = 5/245 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              +       V L  V +  ++ +      +    +   +   +    ++V  ++ +  
Sbjct: 241 NTVVDTRDGTVVTLDQVATVRDTYEKETRIVRVNGVQGIRVAIRKQDNANTVEVSQAILE 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              +  +  PL  I      G  I R +       +    +A+L+ ++    W   L   
Sbjct: 301 EIDRTNKDFPLINIVPVSNSGNFIERSIQNVARSVLYGGGLAILVLLFFLRDWRSTLVIS 360

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + + I  T       G   NL ++  +   +G  V+  +VV + +    +        
Sbjct: 361 LAIPISIISTFALLYFGGFTLNLMSLGGLALGVGMMVDSSIVVLENIF--RRRDEEGEPP 418

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIF 814
           +        E     V +++   +  LP+    G         A  ++F ++ +   S+ 
Sbjct: 419 QIASSNGAREVAAAIVASTITTLVIFLPLIFVPGVSGILFRELAYTVSFSLICSLVVSLS 478

Query: 815 IAAPI 819
           +   +
Sbjct: 479 LVPML 483



 Score = 44.7 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 24/221 (10%), Positives = 78/221 (35%), Gaps = 7/221 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                +              V   +   + +I   +          +  ++   +  + + 
Sbjct: 804  DQQRLVTLDADIGERPLGDVSAEIDALLNQIPRPAGYVFRITGSFEEQQKTFDELFIALG 863

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ + + + +  +++        +  + +     +    L G   NL +    + L G  
Sbjct: 864  LAIMLVYMVLACQYESLRDPTIVMVAVPMAAIGVILTLILTGTTMNLQSGIGCIMLGGIV 923

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +++ D   +  +L       RD + ++    L   + T++   + +LP+A+    G
Sbjct: 924  VNNSILLVD---QASQLRLEGTGARDAVAEAGRRRLRPILMTTLTTVLGLLPLALGIGEG 980

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                   A  +  G++ + + ++ +   +   ++  R+  A
Sbjct: 981  ADAQAPLARAVIGGLIGSTAITLLLTPVVYSIVHSKRSSRA 1021


>gi|323972776|gb|EGB67975.1| AcrB/AcrD/AcrF family protein [Escherichia coli TA007]
          Length = 1040

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/652 (10%), Positives = 171/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++  F++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSMALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGFAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|312889401|ref|ZP_07748954.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mucilaginibacter paludis DSM 18603]
 gi|311298096|gb|EFQ75212.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mucilaginibacter paludis DSM 18603]
          Length = 1048

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 66/543 (12%), Positives = 152/543 (27%), Gaps = 35/543 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G+L      L    + ++P   P                  +   
Sbjct: 8   RPVLSTVISVIIVILGVL-----GLTSLPISQYPEIAPPTVQ---------VSTSYQGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   + +  +E  + ++       +     +  IT+ F      +  A  V   +  
Sbjct: 54  ADVVMNSVIVPLEEQINGVENMTYMTSTASNDGSASITIYFKLGTDPDLAAVNVQNRVSK 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  K+ + T+  +   +++     +                 + QI       
Sbjct: 114 ATSLLPAEVTKSGVTTSKRQSSMVMIFSLYSENKAFDQTFLQNYANINLLPQIKRITGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P  +         ++      N       FG      +   QY
Sbjct: 174 DASVFGTRDYSMRIWLKPDVMATYGLIPDDINNALADQNVEAAPGKFGE---NSNQSFQY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ K  +                 +    +       +         +           
Sbjct: 231 TIKYKGRL-------------KSVTEFNDIVIRSTTSGQVLRLKDVARVELGSQTYSSDS 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +  A  + +  I+              P                S   
Sbjct: 278 KTNGHASIGIAINQTAGSNAHELIKQLESTIEGASKSFPPGVKYASLLNANDFLDASIEK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  L+   ++ + ++ T   L+L G T+ L ++  +V
Sbjct: 338 VIHTLIEAFILVFIVVFIFLQDFRSTLIPAIAVPVAIVGTFFFLNLFGFTINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +  +     +S   +     +     I    +      V + F 
Sbjct: 398 LAIGIVVDDAIVVVEAVHAKLDAGAKSAKGATIGAMNDISGAIVSITLVMAAVFVPVSFI 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G +    + F +T+ ++I+IS   A+++  A+   +++             + F     
Sbjct: 458 SGSSGVFYKQFGLTLAIAIIISAVNALTLSPALCALLLKPHPEGEHHKTTYLQRFYDAFN 517

Query: 538 IAI 540
            + 
Sbjct: 518 TSF 520



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 90/259 (34%), Gaps = 13/259 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + + +     +  ++              +     +  + +            ++
Sbjct: 242 TEFNDIVIRSTTSGQVLRLKDVARVELGSQTYSSDSKTNGHASIGIAINQTAGSNAHELI 301

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWY 691
           + ++  I                   +  L   I K I  +I + I + I ++I    + 
Sbjct: 302 KQLESTIEGASKSFPPGVKYASLLNANDFLDASIEKVIHTLIEAFILVFIVVFIFLQDFR 361

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L     + + I  T  F  LFG   NL  + A++  IG  V+D +VV + +   +   
Sbjct: 362 STLIPAIAVPVAIVGTFFFLNLFGFTINLLTLFALVLAIGIVVDDAIVVVEAVHAKLDAG 421

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVL---PMAVWGGSVI--GSFAIPMAFGIV 806
               S +     ++N+  G  V  S+   ++ +      + G S +    F + +A  I+
Sbjct: 422 AK--SAKGATIGAMNDISGAIV--SITLVMAAVFVPVSFISGSSGVFYKQFGLTLAIAII 477

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +++ ++  +   +  
Sbjct: 478 ISAVNALTLSPALCALLLK 496



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 76/248 (30%), Gaps = 10/248 (4%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +N    +S   S         I+  N           +       A   + ++  + +  
Sbjct: 793  SNGMAPISEFVSLKRVYGPEAINRFNLFTSIAVQGSPKPGYSSGDAIKAIEQVAAQTLPT 852

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                     T       S+ +     + ++       +       +      + +L + +
Sbjct: 853  GYTYEYSGLTREELSSGSQTI----FIFILCVVFVYFLLSAQYESYILPFAVLLSLPIGL 908

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
                 F  +FG+E N+     ++ LIG    + +++ +     +      +S  +   + 
Sbjct: 909  AGAFIFAKIFGVENNIYLQITLIMLIGLLAKNAILIVEFA---VARRRHGLSILEAAIEG 965

Query: 765  INETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + TS A  + ++P+    G   +   S       G+++     +F+   + +
Sbjct: 966  AVARLRPILMTSFAFILGLVPLMMASGAGAVGNRSIGTGAVGGMLIGTVFGVFVIPVLFV 1025

Query: 822  FIYDWRAK 829
                 + +
Sbjct: 1026 VFQGLQER 1033


>gi|224538023|ref|ZP_03678562.1| hypothetical protein BACCELL_02912 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520370|gb|EEF89475.1| hypothetical protein BACCELL_02912 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1043

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/591 (11%), Positives = 162/591 (27%), Gaps = 43/591 (7%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPIDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQELNGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   L+   S+L  +  +N +    +    
Sbjct: 78  YMESNSSNSGGFSATVTFDISADPDLAAVEIQNRLKLAESRLPAEVVQNGISVEKQAASQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++             I  S       +D +       +          +     P +L  
Sbjct: 138 LMTICLMSSDPKFDEIYLSNFATLNVLDLLRRIPGVGRVSNIGSRYYAMQIWVQPDKLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T A +       N      + G + ++  D                +   T      
Sbjct: 198 FGLTVADLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGRLST 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 I    +       +                +    
Sbjct: 244 VGQFEEIVVRANADGSIVRLRDVARISLEASSYNTESSINGENAAVLGIYMLPGANAMEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E        +           +          S      T      LV+IV+F+ +   
Sbjct: 304 AENVKKAMNEISNNFPDGLSYEIPFDMTTYISESIHEVYKTLFEALILVIIVVFLSLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   ++ +++I T   + + G +L + ++ G+VL IG+ VD  I+V E +     +
Sbjct: 364 RATLIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMHE 423

Query: 445 NQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
            +   + +           I  +++      V + F G   G   R F +T+ +S+L+S 
Sbjct: 424 EKLPPYEATKKAMEGLTGAIIATSLVLAAVFVPVSFLGGITGQLYRQFTVTIVVSVLLST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKS-------IDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
             A+++   M   I++ +  K        I+             I+      R       
Sbjct: 484 VVALTLSPVMCSLILKPESHKRKNIVFRYINYALNMGNRKYVRQISRVIGNPRRVLAAFG 543

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
           ++     +           ++ +G  ++ +       L   R+  E     
Sbjct: 544 VVLIAILLINRLIPTSFLPVEDQGYFKVELELPEGATLERTRTVSERAVEY 594



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 75/239 (31%), Gaps = 6/239 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  +               ++ V AN    +  +R                     
Sbjct: 226 VQGLDITIPITTQGRLSTVGQFEEIVVRANADGSIVRLRDVARISLEASSYNTESSINGE 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               L            V E VKK + EI        +  +   ++  +           
Sbjct: 286 NAAVLGIYMLPGANAMEVAENVKKAMNEISNNFPDGLSYEIPFDMTTYISESIHEVYKTL 345

Query: 677 AIAMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             A+++ I + F     W   L  I  + + +  T GF  +FG   N+  +  ++  IG 
Sbjct: 346 FEALILVIIVVFLSLQSWRATLIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            V+D +VV + +     ++   +   +   K++    G  + TS+      +P++  GG
Sbjct: 406 VVDDAIVVVENV--ERIMHEEKLPPYEATKKAMEGLTGAIIATSLVLAAVFVPVSFLGG 462



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 58/146 (39%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          L G+E ++     ++ L+G +  + +++ +  ++ +
Sbjct: 888  SWTVPIAVLLSLPIAALGAYLGVWLCGLENDVYFQIGLVMLVGLAAKNAILIVEFAKEQV 947

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                   +       +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 948  ---DRGANVVKAALHASQLRFRPILMTSLAFILGMLPMVIASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            ++A +  I +     + IY  +AK  
Sbjct: 1005 ILAVTIGILLVPFFFVLIYKAKAKAK 1030


>gi|295085388|emb|CBK66911.1| Cation/multidrug efflux pump [Bacteroides xylanisolvens XB1A]
          Length = 1052

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/595 (12%), Positives = 171/595 (28%), Gaps = 41/595 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     T   +S      N +  G  F +     +   + 
Sbjct: 172 TVSISGAPQREIQVYCDPNKLEAYHLTIETISSIIGAENKNIPGGNFDIGSETYALRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  +++ + +                            F      I   +       
Sbjct: 232 EFDDSRQLADVVVGTH--------------------NGANVFLRDVARIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKIGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAISGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVVASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G +    +     M   + IS   A+S+   +    +   KK   +     +      D 
Sbjct: 452 GMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKPSKMFKLFFTPIEKALDG 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +   + +   W V    +  +  I       +               A   V L 
Sbjct: 512 LDTWYAKMLNWAVRHRPIVIVGCIAFFVISLMCAKGIGTEFFPAQDNARIAVKLE 566



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 90/245 (36%), Gaps = 7/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   +V  +    +SV  ++ +     ++ + +P     
Sbjct: 256 DVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKI 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +         I      V+ + + ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GVIVDTSDNILNTIDSLTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AISGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V +++       P+ +     G +       M   + ++  +++ +   +   +   + 
Sbjct: 433 VVASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQK 492

Query: 829 KNARI 833
           K +++
Sbjct: 493 KPSKM 497



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 8/250 (3%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                   SV   ++  +            ++  +V +      +     V    K     
Sbjct: 782  IYNAQGQSVRVKDVGKVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNKVIDKM 841

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
             +P                     G + ++I  + + I +  +F+   +    + +L   
Sbjct: 842  DLPGDVTIQISGSYEDQQDSFRDLGTLAILI-VVLVFIVMAAQFESLTYPFIIMFSLPFA 900

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
             +  L          ++ ++   + LIG  V + +V+ D +          ++  + +  
Sbjct: 901  FSGVLMALFFTNSTLSVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGLAVLNSVVT 957

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + T+    + ++PMA+ GG    +    AI +  G+ ++   ++ +   + 
Sbjct: 958  AGKSRLRPVLMTTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTISTVLTLILIPTLY 1017

Query: 821  LFIYDWRAKN 830
                    KN
Sbjct: 1018 CVFAGTGIKN 1027


>gi|332996376|gb|EGK16003.1| inner membrane protein [Shigella flexneri VA-6]
          Length = 960

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/433 (13%), Positives = 127/433 (29%), Gaps = 18/433 (4%)

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           +   S       ITL+F      +    +V   LQ     L    ++  +         +
Sbjct: 1   MSSTSDAAGNASITLTFETGTSPDIAQVQVQNKLQLAMPSLPEAVQQQGISVDKSSSNIL 60

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +++    D    +  + +  +     D +  +               +    DP +L + 
Sbjct: 61  MVAAFISDNGSLNQYDIADYVASNIKDPLSRTAGVGSVQLFGS-EYAMRIWLDPQKLNKY 119

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
               + +     + NN   G   G             +  +  +                
Sbjct: 120 NLVPSDVISQIKVQNNQISGGQLGGMPQVADQQLNASIIVQTRL-------------QTP 166

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +   +    +        +                          A  +   T 
Sbjct: 167 EEFGKILLKVQQDGSQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTS 226

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                    L A        +           S      T      LV +V+++ +   +
Sbjct: 227 RAVKEELNRLSAYFPASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFR 286

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             ++   ++ + ++ T A+LS +G T+   ++ G+VL IGL VD  I+V E +     ++
Sbjct: 287 ATIIPTIAVPVVILGTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENVERVIAED 346

Query: 446 Q-SVFCSLDM---GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
           +     +         RA   I        +    +    G   R F+IT+  S+ +S+F
Sbjct: 347 KLPPKEATHKSMGQIQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITLISSMRLSVF 406

Query: 502 TAISIVRAMMIFI 514
            A+S+  A+   I
Sbjct: 407 VAMSLTPALCATI 419



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 82/238 (34%), Gaps = 12/238 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V       +      +        +        +++  +R ++    +++   
Sbjct: 181 SQVLLRDVARVELGAEDYSTVARYNGKPAAGIAIKLAAGANALDTSRAVKEELNRLSAYF 240

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S                I++    ++ + I + + +++  + +   +     + + I 
Sbjct: 241 PASLKTVYPYDTTPFIEISIQEVFKTLVEAIILVFLVMYLFLQNFRATIIPTIAVPVVIL 300

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    +  G   N   +  ++  IG  V+D +VV + +     +    +  ++   KS+
Sbjct: 301 GTFAILSAVGFTINTLTMFGMVLAIGLLVDDAIVVVENV--ERVIAEDKLPPKEATHKSM 358

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            + + R++        +V     +     G +   F+I +    + +   S+F+A  +
Sbjct: 359 GQ-IQRALVGIAVVLSAVFMPMAFMSGATGEIYRQFSITL----ISSMRLSVFVAMSL 411



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 83/230 (36%), Gaps = 7/230 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           + S   + L +    + ++ +   E+   +      G++ A     + +K     +  L 
Sbjct: 714 NASGTMAPLSAYSSTEWTYGSPRLERYNGIPSMEILGEAAAGKSTGDAMKFMADLVAKLP 773

Query: 650 TIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                   G      L       +  IS + + + +   ++ W      +  + L +   
Sbjct: 774 AGVGYSWTGLSYQEALSSNQAPALYAISLVVVFLALAALYESWSIPFSVMLVVPLGVVGA 833

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L    L G+  ++     +LT IG S  + +++ +   + M+      +  + I ++   
Sbjct: 834 LLATDLRGLSNDVYFQVGLLTTIGLSAKNAILIVEFAVEMMQKE--GKTPIEAIIEAARM 891

Query: 768 TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            L   + TS+A  + VLP+ +    G     +    +  G+  A   +I+
Sbjct: 892 RLRPILMTSLAFILGVLPLVISHGAGSGAQNAVGTGVMGGMFAATVLAIY 941


>gi|209964007|ref|YP_002296922.1| AcrB [Rhodospirillum centenum SW]
 gi|209957473|gb|ACI98109.1| AcrB [Rhodospirillum centenum SW]
          Length = 1032

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/622 (11%), Positives = 173/622 (27%), Gaps = 42/622 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    ++L+ ++   G++  L        + + P                   +     
Sbjct: 12  RHPVPPIVLFMILIFAGIVSFL-----TMDVAQDPDIDFPVV---------NVSVSRPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++       T+ F      +   + V   +  
Sbjct: 58  APSELETQVTKKVEDAVASITGIDKISSTVTDGSTNTTIEFKIGYDTDRAVNDVRDAVSR 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D  +  +        +I+         +    E S  +  +    I       
Sbjct: 118 IRSDLPQDIYEPQVRRLDVTGDAILYYSVASQ--VRSVEELSWLVDNEITRAIQRVRGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++  + DP RL  L  T  +++      N    G    V     +     
Sbjct: 176 EIERRGGLEREIKVKLDPVRLMALGVTADEVNAQLRSLNVDLPGGRGNVGASEQAIRTLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 ++    +                       G R+        +      +    
Sbjct: 236 AAHTVEDLGNTEIAI--------------------SGGRKVRLSELGEVVDGTTEMRSIA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                S     +    +   L+     ++  +     V     S   
Sbjct: 276 RLNGEPAVTFAIKRAPGSSEVTVADGIAEVIEQLKKEHPDVRFEL-IIDLVKFTRASFLA 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L ++V++  +   +  +++  ++ L+ I T   +  LG +L   ++  + 
Sbjct: 335 SIEALVIGAALAVLVVWWFLRDARATMISALAMPLSTIPTFLAMQWLGFSLNGITLLALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +G+ VD  I+  E I    R  +  + +           +  + +T ++  + + F  
Sbjct: 395 LVVGILVDDAIVEIENIVRHIRMGKRPYAAAMEAADEIGLAVVATTMTIVVVFLPVSFMP 454

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ +S+L S+  A  I   M  ++++  +       P S  +L     
Sbjct: 455 GIPGQFFKSFGITVAVSVLFSLAVARLITPMMAAYLLKPHQGAEHGPGPWSDRYLGLLD- 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                          ++F    + +L            G   L V       L+   + +
Sbjct: 514 -WCLRNRWKTAGLTGLVFVGSVLPILMIPSTFVPNQDIGFSILSVELPPGATLAETDAAV 572

Query: 599 ESLQIGDISFQNFDGEKNFLVR 620
           +             G      R
Sbjct: 573 QRAGGLLKDRPEVAGVWTSAGR 594



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 87/258 (33%), Gaps = 6/258 (2%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           + ++  G  ++ +   R V LS +   ++         +            +      V 
Sbjct: 238 HTVEDLGNTEIAISGGRKVRLSELGEVVDGTTEMRSIARLNGEPAVTFAIKRAPGSSEVT 297

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
               +  V +++ +  P    +    +        +      VI +A+A+L+  W     
Sbjct: 298 VADGIAEVIEQLKKEHPDVRFELIIDLVKFTRASFLASIEALVIGAALAVLVVWWFLRDA 357

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              + +   + L    T       G   N   + A+  ++G  V+D +V  + +   ++ 
Sbjct: 358 RATMISALAMPLSTIPTFLAMQWLGFSLNGITLLALALVVGILVDDAIVEIENI---VRH 414

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                       ++ +E     V T+M   +  LP++      G    SF I +A  ++ 
Sbjct: 415 IRMGKRPYAAAMEAADEIGLAVVATTMTIVVVFLPVSFMPGIPGQFFKSFGITVAVSVLF 474

Query: 808 AASSSIFIAAPILLFIYD 825
           + + +  I   +  ++  
Sbjct: 475 SLAVARLITPMMAAYLLK 492



 Score = 47.4 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/121 (11%), Positives = 48/121 (39%), Gaps = 5/121 (4%)

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +  +L+++  +L L+G    + +++ +     + +    +     +  +  +     + T
Sbjct: 891  MSISLSSLIGILMLMGIVTKNSILLVE--YAIVSIRDHGLDRHAALLDAGAKRARPIIMT 948

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S+A    + P+A+            A+ +  G++ +   S+ +      F+ D + +   
Sbjct: 949  SIAMIAGMAPIAIGWGADTEFRQPMAVAVIGGLITSTLLSLIVVPVAFTFMDDLQHRVGP 1008

Query: 833  I 833
            +
Sbjct: 1009 L 1009


>gi|152981117|ref|YP_001353373.1| cation/multidrug efflux pump [Janthinobacterium sp. Marseille]
 gi|151281194|gb|ABR89604.1| Cation/multidrug efflux pump [Janthinobacterium sp. Marseille]
          Length = 1058

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/559 (11%), Positives = 164/559 (29%), Gaps = 31/559 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              +      D ++  +    +     +        +     + ITL F+     +    
Sbjct: 47  VTTLYPGASPDVISTTVTAPLERQFGQMPGLNQMTSTSSGGASVITLRFSLGLSLDVAEQ 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +   ++ L  D     + +      + VL+   I       I+    +  +   +
Sbjct: 107 EVQAAINAGSNLLPGDLPMPPIYSKVNPADAPVLT-IAITSPTLPIIKVHDLVENRLAPK 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +       +      +  + +P  L  L  +   +    V  N ++    F     
Sbjct: 166 LSQVDGVGLVSIAGGQRPAVRIQGNPQALASLGLSLDDIRTAIVAANVNQAKGSFDGAQR 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +      ++   E                      ++                 I   
Sbjct: 226 ASTIDANDQLKSAAE--------------------YQNLIIAWKNGNPLRLSDVAQIVDD 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
              +     +            +   +   T++    L   L+A         V      
Sbjct: 266 AENLRLAAWVDRTPGVILNVQRQPGANVIQTVDRVKALLPKLQASLPGSVDVQVIADRTT 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++ 
Sbjct: 326 TIRASVDDTQFELLLAIALVVMVIFLFLRSASATIIPSVAVPLSLVGTFGVIYLAGFSIN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  + +  G  VD  I++ E I     +  S   +   G  +   TI    ++ +  
Sbjct: 386 NLTLMALTISTGFVVDDAIVMIENIARFVEEGDSPMEAALKGSKQIGFTIISLTVSLIAV 445

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G     FAITM ++ILIS   ++++   M   ++R +            
Sbjct: 446 LIPLLFMGDVVGRLFHEFAITMAVAILISAVVSLTLTPMMSARLLRPEHENKPTRIGQWS 505

Query: 531 FFLIPDCIA-------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                  +A           R R       +   + ++  +      + +   G IQ+  
Sbjct: 506 EEQFNRMVAAYGRALVWVLDRPRATLGVFGLTLVLTALLYVVIPKGFFPVQDTGLIQVIT 565

Query: 584 LANRPVDLSVVRSNLESLQ 602
            A +      +    ++L 
Sbjct: 566 EATQTSSFEAMSRRQQALA 584



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 85/231 (36%), Gaps = 7/231 (3%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           LS V   ++  +   ++          L   +    + +     ++ +  K+   +P S 
Sbjct: 256 LSDVAQIVDDAENLRLAAWVDRTPGVILNVQRQPGANVIQTVDRVKALLPKLQASLPGSV 315

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLG 709
                       R  +      ++++   +++ I++  +   A +     + L +  T G
Sbjct: 316 DVQVIADRTTTIRASVDDTQFELLLAIALVVMVIFLFLRSASATIIPSVAVPLSLVGTFG 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G   N   + A+    G+ V+D +V+ + +    +      S  +   K   +  
Sbjct: 376 VIYLAGFSINNLTLMALTISTGFVVDDAIVMIENI---ARFVEEGDSPMEAALKGSKQIG 432

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              +  +++    ++P+   G   G +   FAI MA  I+++A  S+ +  
Sbjct: 433 FTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITMAVAILISAVVSLTLTP 483



 Score = 40.8 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++ R+ I K+        + T+MAA +  LP+ +    G  +     + M  G+
Sbjct: 956  AEREEHLAPREAIYKACLLRFRPILMTTMAALLGALPLMLGTGAGHELRHPLGVTMVGGL 1015

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +V+   ++F    I L       +  
Sbjct: 1016 IVSQLLTLFTTPVIYLGFAKQAQRLK 1041


>gi|254884749|ref|ZP_05257459.1| multidrug resistance protein [Bacteroides sp. 4_3_47FAA]
 gi|294774962|ref|ZP_06740492.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides vulgatus PC510]
 gi|319644188|ref|ZP_07998713.1| AcrB/AcrD family Multidrug resistance protein [Bacteroides sp.
           3_1_40A]
 gi|254837542|gb|EET17851.1| multidrug resistance protein [Bacteroides sp. 4_3_47FAA]
 gi|294451171|gb|EFG19641.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides vulgatus PC510]
 gi|317384310|gb|EFV65281.1| AcrB/AcrD family Multidrug resistance protein [Bacteroides sp.
           3_1_40A]
          Length = 1071

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/699 (10%), Positives = 179/699 (25%), Gaps = 59/699 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P               + +    
Sbjct: 9   RPILSAVISISIVVVGII-----GLFTLPVEQYPDIAPPT-------------IQVSTSY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  LQ      L   +   E +   +          IT+ F      +  A  V  
Sbjct: 51  FGASAETLQKSVIAPLEEAINGVENMTYMTSTASNAGVVDITVYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  +  +  + T+  +   + +               S  I       I   
Sbjct: 111 RVSKATGQLPAEVTQVGVTTSKRQTSILQMFSLYSPDDSYDEKFLSNYISINLKPAILRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     +        +     P  + Q     + ++      N       FG        
Sbjct: 171 QGVGDMMIMG-GDYSMRIWMKPDVMAQYKLIPSDVTQVLAEQNIESATGSFGENSDETYQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                    +                   +    +                +I       
Sbjct: 230 YTMKYKGRLI----------------TPEEFGEIVIRSSDNGEVLKLKEIADIEMGEESY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        +    A  +               R         +    +      
Sbjct: 274 AYHGAMNGHPGISCMIFQTAGSNATEVNNNIDAFLEEARKDLPKGVEMVQVMSSNDFLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++++++ +   +  ++    I +++I T A +S+ G ++ L ++
Sbjct: 334 SIHEVIKTLFEAIFLVILIVYVFLQDIRSTIIPLVGIIVSLIGTFAFMSIAGFSINLITL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG  VD  I+V E ++         S   S+D     + + I  S +   +   
Sbjct: 394 FALVLVIGTVVDDAIVVVEAVQARFDVGYRSSYMASIDAMKGISNAVISSSLVFMAVFIP 453

Query: 476 VLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519
           V F  G        F +TM +++ IS   A+++  A+                     + 
Sbjct: 454 VSFMSGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALFLKPYINEDGTEKNNFAARF 513

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            K+ +    +        +     R       ++    + +  +  T       + +G +
Sbjct: 514 RKAFNAAFDAMIERYKKGVLFFIKRKWMVWTLLAASVVLLAFLMNTTKTSLVPDEDQGVV 573

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V       L      +  ++   +           +       G   +   ++  +K
Sbjct: 574 FVNVSTAAGSSLKTTNDVMMRIEKRMMDIPQVL-HVQRVAGYGLLAGQGNSFGMLILKLK 632

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                    + +Q         + ++    I  +    I
Sbjct: 633 PWDEREGKENDVQAVIGQVYGRTADIKDASIFAISPGMI 671



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 79/201 (39%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +      LE  +K + + V +  + ++         E+I+     +    + +LI     
Sbjct: 301 NNNIDAFLEEARKDLPKGVEMVQVMSSNDFLYASIHEVIKTLFEAI---FLVILIVYVFL 357

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 +  +  +I+ +  T  F ++ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 358 QDIRSTIIPLVGIIVSLIGTFAFMSIAGFSINLITLFALVLVIGTVVDDAIVVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++   G+       F + MA  
Sbjct: 418 FDVGYRSSYMASI--DAMKGISNAVISSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +      
Sbjct: 476 VGISAVNALTLSPALCALFLK 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 76/252 (30%), Gaps = 10/252 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E   +
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMFNSIAVNAMPAEGYSTGDAIRAVQETAVQ 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I   I  ++I  I   +Y      +      + ++
Sbjct: 850  ALPKGFGYDFGGITREETDQGGTTIIIFAICFLMIYLILSALY----ESFLIPFAVLLSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               +  +  F  + G+E N+     ++ LIG      +++ +   +        +S    
Sbjct: 906  PFGLMGSFLFAKMMGLENNIYLQTGLIMLIGLLAKTAILLTEYATE---RRKAGMSLTSA 962

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
               +    L   + T++     + P+ V    G +   S       G+V+   + +FI  
Sbjct: 963  ALSAAKARLRPILMTALTMIFGLFPLMVASGVGANGNSSLGTGTVGGMVIGTLALLFIVP 1022

Query: 818  PILLFIYDWRAK 829
             + +     + K
Sbjct: 1023 SLFIVFQYLQEK 1034


>gi|261380875|ref|ZP_05985448.1| multiple transferable resistance system protein MtrD [Neisseria
           subflava NJ9703]
 gi|284796352|gb|EFC51699.1| multiple transferable resistance system protein MtrD [Neisseria
           subflava NJ9703]
          Length = 1070

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/593 (11%), Positives = 162/593 (27%), Gaps = 48/593 (8%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF----LKK 83
            +  + ++PS                  + L           ++     +       ++ 
Sbjct: 28  QKLPISQYPSVAAPT-------------ITLRATYPGASAQVMEDSVLAVIERNMYGVEG 74

Query: 84  EGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                 S        ++L+F     ++     V   L  V S L    ++  +  +  + 
Sbjct: 75  LDYMTTSANSSGSGSVSLTFTPETNEDLAQVDVQNKLSEVLSTLPSTVQQYGVTVSKARS 134

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
             + +   + +       E +    R  I ++   +   Q          +    DP +L
Sbjct: 135 NFLQVVMLSSE--KQSIEEMNDYAQRNIIPELQRIDGVGQVQLFGAQR-AMRIWVDPKKL 191

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           +    + A ++      N        G             V  + ++S            
Sbjct: 192 QNYNLSFATVTNALATQNIQISAGSIGSLPAAAGQTISATVTAQGQLS------------ 239

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    I          +      +   +        L                +  
Sbjct: 240 -TAEEFGNIILVSNTDGSNVYLKDVAKVSLGMQDYSTSTRLNGVNTTGMAVMLSNSGNAL 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T        A+L+          V          S      T      LV +V+++ + 
Sbjct: 299 ATATAVKEKMAVLQKYFPDGMSWKVPYDTSKFVEISIEKVIHTLLEAIVLVFLVMYLFLQ 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             ++ L+    + ++++   A +S +G ++ + ++  +VL IG+ VD  I+V E +    
Sbjct: 359 NIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENVERIM 418

Query: 443 -RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILI 498
             +  S   +     S+    +       +   V L  F    G   + FA+TM  SI  
Sbjct: 419 ASEGLSPKAATKKAMSQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMVASIGF 478

Query: 499 SMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
           S F A+++  A+   +           +       +    +        +A    +    
Sbjct: 479 SAFLALTLTPALCATMLKPIQNGHHEEKKGFFGWFNKKFDNWTHGYEGWVAKVLRKTLRM 538

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            V    L  +     +         + +G + L V            + L  +
Sbjct: 539 MVVYIGLTVVGVFLFMRLPTSFLPTEDQGNLMLSVQLPAGATKERTDATLAQI 591



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 94/249 (37%), Gaps = 6/249 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   I +       V L  V      +Q    S +        +  +    G+++A    
Sbjct: 244 FGNIILVSNTDGSNVYLKDVAKVSLGMQDYSTSTRLNGVNTTGMAVMLSNSGNALATATA 303

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           ++     + +  P            K     I K I  ++ + + + + +++  +   + 
Sbjct: 304 VKEKMAVLQKYFPDGMSWKVPYDTSKFVEISIEKVIHTLLEAIVLVFLVMYLFLQNIRYT 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + +     F +  G+  N+  + A++ +IG  V+D +VV + +     + + 
Sbjct: 364 LIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMASE 421

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +S +    K++++  G  +  +       +P+A++ G+       FA+ M   I  +A 
Sbjct: 422 GLSPKAATKKAMSQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMVASIGFSAF 481

Query: 811 SSIFIAAPI 819
            ++ +   +
Sbjct: 482 LALTLTPAL 490



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 689  KWYFALGAITTLILDITKTLGFF------ALFG----IEFNLTAVAAVLTLIGYSVNDKV 738
                A+  +  L L I   LG        AL G       ++      +T++G S  + +
Sbjct: 893  SIPLAVILVIPLGL-IGAALGVTGRNMFEALLGSIPAYANDIYFQVGFVTVMGLSAKNAI 951

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---G 795
            ++ +  +    L     S  +    + +      + TS A  + V+P+ V  G+      
Sbjct: 952  LIIEFAKD---LQAQGKSAIEAALAAAHLRFRPIIMTSFAFILGVVPLYVASGASSASQR 1008

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    + +G+++    S+F+     + +  +  + A
Sbjct: 1009 AIGTTVVWGMLIGTILSVFLVPLFYVVVRKFFKETA 1044


>gi|161618256|ref|YP_001592143.1| acriflavin resistance protein [Brucella canis ATCC 23365]
 gi|260567101|ref|ZP_05837571.1| acriflavin resistance protein [Brucella suis bv. 4 str. 40]
 gi|161335067|gb|ABX61372.1| acriflavin resistance protein [Brucella canis ATCC 23365]
 gi|260156619|gb|EEW91699.1| acriflavin resistance protein [Brucella suis bv. 4 str. 40]
          Length = 1043

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 158/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSVV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++ + +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   ++     +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFREFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 69/164 (42%), Gaps = 7/164 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G     +    +  G+ +A  +++++     L +  +    
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTKPK 1021


>gi|260172746|ref|ZP_05759158.1| multidrug resistance protein mexB (multidrug-efflux protein)
           [Bacteroides sp. D2]
 gi|315921035|ref|ZP_07917275.1| multidrug resistance protein mexB [Bacteroides sp. D2]
 gi|313694910|gb|EFS31745.1| multidrug resistance protein mexB [Bacteroides sp. D2]
          Length = 1059

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 77/696 (11%), Positives = 176/696 (25%), Gaps = 53/696 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P              ++     
Sbjct: 8   KRPVMAISISVLILAIGLISLF-----TLPVEQYPDIAPPT-----------VYVTASYT 51

Query: 62  EDDFVNGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             D     +      L   +        I   +       I + F      +  A  V  
Sbjct: 52  GADA-EAVMNSVIMPLEESINGVEDMMYISSSASNAGLAIIQVYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   + +               +  +    I QI   
Sbjct: 111 RVAKAQGLLPAEVTKVGVSTMKRQTSFLQIGALVCTDGRYDQTFLANYLDINVIPQIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     +        +     P R+ Q     + ++      N        G        
Sbjct: 171 EGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDITAVLGEQNIEAPTGSLGESSQNVFQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                        +    +                 +       
Sbjct: 230 ----------------FTMKYRGRLKSVEEFQNTVVRSREDGSILRLKDVAEVELGTMTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                + +      +    A  +     +        +          +    +      
Sbjct: 274 SFRSEMDSQPAVLYMIFQTAGSNATAVNKEITAQIERMEKNLPEGTEFVTMMSSNDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + ++
Sbjct: 334 SIHNVVETLIIAIILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG  VD  I+V E ++ +      S + +           I       +   + 
Sbjct: 394 FALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIVSCTCVFMAVFIP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF- 532
           + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +   R   
Sbjct: 454 VTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVRA 513

Query: 533 ----------LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                            + F+R R+    +  +     + L+ T           G+ + 
Sbjct: 514 AYNASFNAVLGKYKRGVMFFIRHRWMVWTLLAVAVALLVYLMSTTKTGLVPQEDQGVIMV 573

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            ++  P       + +       +           +       G   +   ++  +K   
Sbjct: 574 NVSISPGSTLEETTKVMDRLENILKDTPEIEHYARVAGYGLISGQGTSYGTIIIRLKDWS 633

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                  +            + L    +     + I
Sbjct: 634 ERKGKEHSSDAVVSRLNAQFQSLKEAQVFSFQPAMI 669



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 359 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 419 DAGYK--SPYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 66/248 (26%), Gaps = 5/248 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                   +         ++      Y +D +    + V     +        L+ +   
Sbjct: 750 YCGGAYISNYNQYGKVYRVMMQASPEYRLDEQALNNMFVRNGTEMAPVSQFVTLKQVLGP 809

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           + + +                  S    +V+E V  +                       
Sbjct: 810 ETANRFNLYSTITANVNPADGYSSGEVQKVIEEVAAQSLPAGYGYEYGGMAREEASSGGA 869

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                I  + +  I  LI   +   +      I ++   +  +  F    G+E N+    
Sbjct: 870 QTVF-IYAICVFLIY-LILACLYESFLVPFAVIFSVPFGLMGSFLFAKFLGLENNIYLQT 927

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            V+ LIG      +++ +     ++     +   +    +    L   + T +     +L
Sbjct: 928 GVIMLIGLLAKTAILITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGML 984

Query: 785 PMAVWGGS 792
           P+    G+
Sbjct: 985 PLMFSSGA 992


>gi|254718474|ref|ZP_05180285.1| acriflavin resistance protein [Brucella sp. 83/13]
 gi|265983441|ref|ZP_06096176.1| acriflavin resistance protein [Brucella sp. 83/13]
 gi|306838281|ref|ZP_07471127.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella sp. NF 2653]
 gi|264662033|gb|EEZ32294.1| acriflavin resistance protein [Brucella sp. 83/13]
 gi|306406572|gb|EFM62805.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella sp. NF 2653]
          Length = 1043

 Score =  159 bits (401), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 157/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNGKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 84/253 (33%), Gaps = 11/253 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       +  V +      I   + ++       L  ++    +++  ++ +      +
Sbjct: 251 VYIKGRTQIRDVATVTLGPDIESSAVRSNGKTAIGLGIVRQAQSNTLDISQGVRAAVANL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLI 701
            + +P                  I +  + +I S I ++  I    +     L    ++ 
Sbjct: 311 QKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVIIVVAIIFMFLWDARATLIPALSMP 370

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T+    L G   N+  + A++   G  V+D +VV + +   ++     +  R   
Sbjct: 371 VALIGTIAAIYLVGFSVNILTLLALVLATGLVVDDAIVVLENV---VRRRNQGMGPRAAA 427

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                E     + T++      +P++      G +   F   +A  +++    S  +A  
Sbjct: 428 VLGTQEVFFAVIATTLTLAAVFVPISFLPGQAGGLFREFGFVLAIAVLL----SSVVALT 483

Query: 819 ILLFIYDWRAKNA 831
           +   +     K A
Sbjct: 484 LCPMLASRFLKEA 496



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 69/164 (42%), Gaps = 7/164 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G     +    +  G+ +A  +++++     L +  +    
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTKPK 1021


>gi|319900619|ref|YP_004160347.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides helcogenes P 36-108]
 gi|319415650|gb|ADV42761.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides helcogenes P 36-108]
          Length = 1059

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/621 (10%), Positives = 157/621 (25%), Gaps = 56/621 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  +GL+  L        ++++P   P               + +   
Sbjct: 8   KRPVMAISISLLILIVGLISLL-----TLPVEQYPDIAPPT-------------VQVSAS 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVT 116
                    +      L   +   E +   +          I + F      +  A  V 
Sbjct: 50  YTGADAEAVMNSVIMPLEESINGVENMMYITSTATNAGTATINVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  +  + T   +   + ++              +  +    +  +  
Sbjct: 110 NRVSKAQGLLPAEVTRIGVTTQKRQTSFLQVNTLVSTDGTYDERFLANYLDINIVPAVKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IDGVGDVMAMGD-TYSMRIWLKPERMAQYGLIPSDVTSVLGEQNIESPTGSLGADSKNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                       T +    +   +            ++      
Sbjct: 229 Q----------------FTMKYRGRLKSTEEFQNTVIRAQADGSVLRLKDVADVELGSLS 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +    A  +          L   L          I    +     
Sbjct: 273 YSFHGETDGHPGVTFLAFQVAGANATAVNSDITALLNDLSKDLPKGTKFITLMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  ++   SI +++I T A +   G ++ + +
Sbjct: 333 ASIHNVVETLIIAIILVILVVYFFLQDLKSTIIPSISIVVSLIGTFACMMAAGFSINILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIVVVEAVQAKFDAGYTSSYQATKDAMGDVTMAIVSCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG +      F +TM  ++ ISM +A+++  A+   ++R         +   R  
Sbjct: 453 PVTFMGGTSGIFYTQFGVTMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 533 LIPDCIA------------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
              +                           + I   +    +  T       + +G I 
Sbjct: 513 AAYNASYNALLGKYKKGVMFAIHHRWMTWTSLGIATVLLVWLMATTKTGLVPQEDQGFIM 572

Query: 581 LGVLANRPVDLSVVRSNLESL 601
             V       L      +   
Sbjct: 573 ANVSTAPGSTLEETAKVMAKA 593



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/277 (10%), Positives = 77/277 (27%), Gaps = 11/277 (3%)

Query: 560  SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
               ++                     +    +S   +  + L     +  N        V
Sbjct: 766  YRVMMQASPEFRLDQHALDNMFVRNGSEMAPVSQFVTLKKVLGPETANRFNLYSSITVNV 825

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                       Q  + E+  + +                         + ++   I  + 
Sbjct: 826  NPAPGYSSGEVQKAIEEVSAQALPSGYGYEYGGMAREEASSGGM----QTVLIYGICIVL 881

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + +   ++ +      I ++   +  +  F  LFG+E N+     V+ LIG      +
Sbjct: 882  IFLILACLYESFLIPFAVIFSVPFGLMGSFLFAKLFGLENNIYLQTGVIMLIGLLAKTAI 941

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ +   +        +   +    +    L   + T +     +LP+      G +   
Sbjct: 942  LITEFAVE---RRRKGMGIIESAYAAAQARLRPILMTVLTMIFGMLPLMFSSGAGANGNS 998

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S    +  G+ V   + +F+     +     + K  +
Sbjct: 999  SLGTGVVGGMAVGTLALLFVVPVFYIAFEFLQEKIRK 1035



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 51/140 (36%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +    ++++ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 359 DLKSTIIPSISIVVSLIGTFACMMAAGFSINILTLFALVLAIGTVVDDAIVVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
               T  S       ++ +     V  +       +P+   GG+       F + MA  +
Sbjct: 419 DAGYT--SSYQATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGIFYTQFGVTMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496


>gi|237717441|ref|ZP_04547922.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262406205|ref|ZP_06082755.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644098|ref|ZP_06721875.1| heavy metal efflux pump, CzcA family [Bacteroides ovatus SD CC 2a]
 gi|294806558|ref|ZP_06765397.1| heavy metal efflux pump, CzcA family [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229443424|gb|EEO49215.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262357080|gb|EEZ06170.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292640622|gb|EFF58863.1| heavy metal efflux pump, CzcA family [Bacteroides ovatus SD CC 2a]
 gi|294446253|gb|EFG14881.1| heavy metal efflux pump, CzcA family [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 1052

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/569 (12%), Positives = 167/569 (29%), Gaps = 41/569 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     T   +S      N +  G  F +     +   + 
Sbjct: 172 TVSISGAPQREIQVYCDPNKLEAYHLTIETISSIIGAENKNIPGGNFDIGSETYALRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  +++ + +                            F      I   +       
Sbjct: 232 EFDDSRQLADVVVGTH--------------------NGANVFLRDVARIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKIGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAISGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G +    +     M   + IS   A+S+   +    +   KK   +     +      D 
Sbjct: 452 GMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKPSKMFKLFFTPIEKALDG 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT 566
           +   + +   W V    +  +  I     
Sbjct: 512 LDTWYAKMLNWAVRHRPIVIVGCIAFFIV 540



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 90/245 (36%), Gaps = 7/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   +V  +    +SV  ++ +     ++ + +P     
Sbjct: 256 DVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKI 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +         I      V+ + + ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GVIVDTSDNILNTIDSLTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AISGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++       P+ +     G +       M   + ++  +++ +   +   +   + 
Sbjct: 433 VIASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQK 492

Query: 829 KNARI 833
           K +++
Sbjct: 493 KPSKM 497



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 8/250 (3%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                   SV   ++  +            ++  +V +      +     V    K     
Sbjct: 782  IYNAQGQSVRVKDVGKVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNKVIDKM 841

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
             +P                     G + ++I  + + I +  +F+   +    + +L   
Sbjct: 842  DLPGDVTIQISGSYEDQQDSFRDLGTLAILI-VVLVFIVMAAQFESLTYPFIIMFSLPFA 900

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
             +  L          ++ ++   + LIG  V + +V+ D +          ++  + +  
Sbjct: 901  FSGVLMALFFTNSTLSVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGLAVLNSVVT 957

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + T+    + ++PMA+ GG    +    AI +  G+ ++   ++ +   + 
Sbjct: 958  AGKSRLRPVLMTTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTISTVLTLILIPTLY 1017

Query: 821  LFIYDWRAKN 830
                    KN
Sbjct: 1018 CVFAGTGIKN 1027


>gi|163842561|ref|YP_001626965.1| acriflavin resistance protein [Brucella suis ATCC 23445]
 gi|163673284|gb|ABY37395.1| acriflavin resistance protein [Brucella suis ATCC 23445]
          Length = 1043

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 158/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++ + +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   ++     +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFREFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    +  G+ +A  +++++  P+   +     K  
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYV-TPLAYLLLGRFTKPK 1021


>gi|171317836|ref|ZP_02907015.1| acriflavin resistance protein [Burkholderia ambifaria MEX-5]
 gi|171097001|gb|EDT41869.1| acriflavin resistance protein [Burkholderia ambifaria MEX-5]
          Length = 1102

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 73/583 (12%), Positives = 157/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGVFAFIKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    S   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMI-VSLTSETSSPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSVSGSANPAVRVELEPHALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                 +   +  + +  +
Sbjct: 217 --KGAIEFGPKHYQLYTNDQASHASQYSDLVVAYRNGAAVRLSDLSEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIETIDRVRTALPQLTASLPADITVTPVLDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAISLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENITRHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R       +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLREPHDAREEGRVGRFLERFFTRMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   +L  +     +  +   Y I  KG     
Sbjct: 515 RGYERSLSWALRRPLLVLLILFATIGLNVYLYIIVPKGFFPQQ 557



 Score = 85.9 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + IS + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAISLVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---TRHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+ + S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLAVSLTVTP 483


>gi|15966215|ref|NP_386568.1| putative transport transmembrane protein [Sinorhizobium meliloti
           1021]
 gi|307308566|ref|ZP_07588268.1| acriflavin resistance protein [Sinorhizobium meliloti BL225C]
 gi|307317344|ref|ZP_07596784.1| acriflavin resistance protein [Sinorhizobium meliloti AK83]
 gi|15075485|emb|CAC47041.1| Multidrug resistance protein [Sinorhizobium meliloti 1021]
 gi|306896933|gb|EFN27679.1| acriflavin resistance protein [Sinorhizobium meliloti AK83]
 gi|306900966|gb|EFN31575.1| acriflavin resistance protein [Sinorhizobium meliloti BL225C]
          Length = 1103

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/671 (12%), Positives = 192/671 (28%), Gaps = 46/671 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  +G             + RFP+                  +     
Sbjct: 9   RNPVAPILAFFVLVVLG-----WQSFNSLPITRFPNIDVPIV---------SIAVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    +   + F            V   +  
Sbjct: 55  APAELETQVTKEIEDAVAGVSGVDHIESTITDGISTTAVIFRMEVPTTQAVQDVKDAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    ++ ++     +  +I     +   +     E S  +       I       
Sbjct: 115 IRSDLPTSIEEPIVSKVDVEGQAIQTFSVSSPGMTLE--ELSWFVDDTIKRAIQGQTGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E D  RL     + A ++      N         V     +     
Sbjct: 173 RVDRYGGSDREVRVELDEDRLNSFGISAADVNAQLRRMNMDLGSGRGQVGGSEQAIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D   ++G  ++     F   +    V  +++E  +   F                  
Sbjct: 233 DTRDVTALAGTMISLPNGRFVRLSELGKVIDTYEEPKSFSRFNGQPGVT----------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A+ +   ++               P     + + +V    G+   
Sbjct: 282 ----------FAVFRAKGASEVSVAETVGKTLDEIRAKHPDVSIEMVDDSVYFTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+ + +   +  L++  ++ L+ I T  ++ LLG +L L S   + 
Sbjct: 332 AIHTLIEGAVLAVIVVMLFLRNWRATLISAVALPLSAIPTFWVMELLGFSLNLVSFLAMT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +  +  T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIERHIRMGKSPYRAAIEAADEIGLAVIATTFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRY----KKMKSIDINPLSRFFLI 534
           G   +    F +T+ +S+  S+  A  I   M  ++++                    L+
Sbjct: 452 GIPGQYFIQFGLTVAVSVFFSLLVARLITPVMAAYLMKPSDVSGHHDDEGFMMRQYTRLV 511

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  + R       I +        L+F  G     +    + L +       L+  
Sbjct: 512 RFTTKRWYTRYSTLLAAILVSVGSVVALLVFVPGSFLPPEDSSRVSLSIELPPDAMLADT 571

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                 +   +        E  F++      GD   +   + ++ +K+   +    + + 
Sbjct: 572 DRTTTEI--YNRVKDIDGVENVFVLGGASPKGDLELRRAAVTVLLEKLDHSLINKVVNDV 629

Query: 655 EIVGPKISREL 665
               P I + L
Sbjct: 630 IGRTPLIGQYL 640



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 81/250 (32%), Gaps = 8/250 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +   R V LS +   +++ +      +            + +    V+    +    
Sbjct: 244 MISLPNGRFVRLSELGKVIDTYEEPKSFSRFNGQPGVTFAVFRAKGASEVSVAETVGKTL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAIT 698
            +I    P  +I+  +      +       I  +I  + +A+++ +     W   L +  
Sbjct: 304 DEIRAKHPDVSIEMVD-DSVYFTYGNYEAAIHTLIEGAVLAVIVVMLFLRNWRATLISAV 362

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L L    T     L G   NL +  A+    G  V+D +V  + +    +      S  
Sbjct: 363 ALPLSAIPTFWVMELLGFSLNLVSFLAMTLATGILVDDAIVEIENI---ERHIRMGKSPY 419

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFI 815
               ++ +E     + T+       +P++   G        F + +A  +  +   +  I
Sbjct: 420 RAAIEAADEIGLAVIATTFTIIAVFVPVSFMPGIPGQYFIQFGLTVAVSVFFSLLVARLI 479

Query: 816 AAPILLFIYD 825
              +  ++  
Sbjct: 480 TPVMAAYLMK 489



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 80/215 (37%), Gaps = 7/215 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++  +   +        ++  +V+L       VA        ++   +     T+Q  E
Sbjct: 803  SSVADINYAEGPSSIKRYDRYRVVKLGADLPAGVALDTASARFREIAADADLPETVQFLE 862

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                ++  E+       +++  + +L+ + + FK        + +L L I        L 
Sbjct: 863  SGDAEVQAEMQESFGNAMLLGLMMVLVVLILLFKDVIQPFTILFSLPLAIGGVAAALILT 922

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                ++  +  +L L+G    + +++ D   + M      +     + ++  +     V 
Sbjct: 923  QNALSMPVLIGILMLMGIVTKNAILLVDFGIEMMH---HGMDRTLAMIEAGRKRARPIVM 979

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
            TS+A    +LP A+    GGS     AI +  GI+
Sbjct: 980  TSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGII 1014


>gi|17987928|ref|NP_540562.1| acriflavin resistance protein B [Brucella melitensis bv. 1 str.
           16M]
 gi|256044006|ref|ZP_05446917.1| acriflavin resistance protein B [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260563366|ref|ZP_05833852.1| acriflavin resistance protein [Brucella melitensis bv. 1 str. 16M]
 gi|265990416|ref|ZP_06102973.1| acriflavin resistance protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17983666|gb|AAL52826.1| acriflavin resistance protein b [Brucella melitensis bv. 1 str.
           16M]
 gi|260153382|gb|EEW88474.1| acriflavin resistance protein [Brucella melitensis bv. 1 str. 16M]
 gi|263001200|gb|EEZ13775.1| acriflavin resistance protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 1043

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 157/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+   +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPAALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 72/220 (32%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++   +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPAALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   +      +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFREFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 69/164 (42%), Gaps = 7/164 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G     +    +  G+ +A  +++++     L +  +    
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTKPK 1021


>gi|39937155|ref|NP_949431.1| putative multidrug-efflux transport protein mexF [Rhodopseudomonas
           palustris CGA009]
 gi|39651013|emb|CAE29536.1| putative multidrug-efflux transport protein mexF [Rhodopseudomonas
           palustris CGA009]
          Length = 1050

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/679 (10%), Positives = 181/679 (26%), Gaps = 38/679 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  ++  +GLL      L +  + + P  +P                +     
Sbjct: 9   RPRFAIVIAILMTIVGLLA-----LTRIPVAQLPDIVPPQVQ---------VTTLYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +     + K      S     +  +T+SF      +     V   +Q 
Sbjct: 55  AEVLESTVAQPLEAQIIGVDKMIYMKSSSGNDGSYTLTVSFELGSNPDINTVNVNNRVQT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   +    +    + +   +        +  +       +D++  +    
Sbjct: 115 SLSQLPAEVQLQGVTVKKKSSSILQVVMLSS-DGKYDPLFMTNFATINVLDELARTPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 R+   +    D  RL  L    + +       N        G R +      Q 
Sbjct: 174 SASLFGRLNYSMRIWFDTIRLTSLGLVPSDVVKAIQSQNIQAPVGRIGARPVSSDQQLQI 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ +  +S                +    +                 +           
Sbjct: 234 NVQTQGRLS-------------SPEQFKNVVIRANPDGSVLRVGDVARVEMGAQNEDVEA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +              +R                     +   
Sbjct: 281 RLNTSPSVAIGIYLAPGANALNASTAVNATLDKIRGRVPAGLKVRSIYDATTIVNETVDE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  +V   ++ +++I + A+L +LG ++   S+  +V
Sbjct: 341 VLKTLVEAFILVAIVVFVFLGNLRATIVPVIAVPVSIIASYAVLLVLGYSINTISLLALV 400

Query: 422 LGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +          S   +      +    I    +      V + F
Sbjct: 401 LAIGIVVDDAIVVVENVERIMEEEPEISAADATKKAMRQVTGPIIAITMVLFSVFVPIGF 460

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDINPLSRFF 532
             G +    R FA+T+  ++ +S   A+++  A+    +R+   +     I         
Sbjct: 461 IPGISGELFRQFAVTISAAMFVSAINALTLSPALCAVFLRHSPHRGALARIGHGIDKVRN 520

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +      A    + +        +    T       + +G   + +       + 
Sbjct: 521 GYAFVVHKSLRMAAISLLLVGGCALGSGLLSRITPTGFLPEEDQGAFFINIQLPESASVE 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                +  L+               +         +     V+  +K        + + Q
Sbjct: 581 RTSRAVAQLEDILGKMPQVKDTIAVVGFSILDQYGASNSALVIVTLKPFENRRGAMDSAQ 640

Query: 653 NTEIVGPKISRELIRKGIV 671
                    + ++    ++
Sbjct: 641 ALIAKTFGAATQIKAATVI 659



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 73/222 (32%), Gaps = 9/222 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G +       + +                        +E    G   VI++
Sbjct: 814  NNYRSVTVMGSTAPGVSSGDAMAAMEKVAANTLPSGYAFEWTGTSFQEQKVGGQTPVILA 873

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +  + ++ + +        + G+  +L A   ++ LI  +
Sbjct: 874  LAVLFAYLFLVALYESWVIPIPVLLSVTVGVLGAFFGLLVSGLALDLYAQIGLVVLIAMA 933

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +  ++  +      S  +  +          + TS+A    + P+    G+ 
Sbjct: 934  AKNGILIVEFAKEQREA---GASIIEAAETGAKLRFRAVMMTSIAFIAGLAPLVWADGAA 990

Query: 794  ---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 S + P+  G++ A+   IF+   + +     R + AR
Sbjct: 991  KIARRSVSTPVFAGMLAASLLGIFVIPMLYVTFQTLRERAAR 1032



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 90/250 (36%), Gaps = 11/250 (4%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  V       Q  D+  +        +        +++  +  +     KI   VP   
Sbjct: 263 VGDVARVEMGAQNEDVEARLNTSPSVAIGIYLAPGANALNASTAVNATLDKIRGRVPAGL 322

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
              +      I  E + + +  ++ + I + I +++        +  +  + + I  +  
Sbjct: 323 KVRSIYDATTIVNETVDEVLKTLVEAFILVAIVVFVFLGNLRATIVPVIAVPVSIIASYA 382

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSIN 766
              + G   N  ++ A++  IG  V+D +VV    +R+ +        IS  D   K++ 
Sbjct: 383 VLLVLGYSINTISLLALVLAIGIVVDDAIVVVENVERIMEE----EPEISAADATKKAMR 438

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +  G  +  +M  F   +P+       G +   FA+ ++  + V+A +++ ++  +    
Sbjct: 439 QVTGPIIAITMVLFSVFVPIGFIPGISGELFRQFAVTISAAMFVSAINALTLSPALCAVF 498

Query: 824 YDWRAKNARI 833
                    +
Sbjct: 499 LRHSPHRGAL 508


>gi|319900966|ref|YP_004160694.1| acriflavin resistance protein [Bacteroides helcogenes P 36-108]
 gi|319415997|gb|ADV43108.1| acriflavin resistance protein [Bacteroides helcogenes P 36-108]
          Length = 1044

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/554 (12%), Positives = 158/554 (28%), Gaps = 40/554 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENVLNSVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S L  D +  ++   +   I IVL     ++           +  + ++ +       
Sbjct: 115 VSSSLPDDVENPIIFKFSTDMIPIVLLSVQANE---SQAALYKILDDRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP +L     +   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPYKLEAYNLSIETISSIIGAENRNIPGGNFDIGNETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  ++  I +                                   +   +       
Sbjct: 232 EFDDSRQLEDIVVGTH--------------------NGASIHLRDVAKVVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     E        L+          V        L +   
Sbjct: 272 YNNGVKGAMIVVQKQSGANSVEISEKVQQALPRLQKNLPSDVKLGVIVDTSENILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAVSGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSEPKQAAVHGTNEVAISVVASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G +    +     M   + IS   A+S+   +   ++R +K +S       +        
Sbjct: 452 GMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKQSKAFTLFFKPIECGLDG 511

Query: 539 AIQFMRARFWGVGI 552
              +          
Sbjct: 512 LDNWYARMLNWAVR 525



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 90/244 (36%), Gaps = 7/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   +V  +    +SV  +  ++    ++ + +P     
Sbjct: 256 DVAKVVDTVEERAQETYNNGVKGAMIVVQKQSGANSVEISEKVQQALPRLQKNLPSDVKL 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +   +     I      V+ + + ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GVIVDTSENILNTIDSLTETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AVSGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSEPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V +++       P+ +     G +       M   + ++  +++ +   +   +   + 
Sbjct: 433 VVASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQK 492

Query: 829 KNAR 832
           K ++
Sbjct: 493 KQSK 496



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 79/242 (32%), Gaps = 8/242 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              +L ++            ++  +V +      +     V           +P       
Sbjct: 792  IKDLGTVVERFAPPTIERKDRERIVTVSAVISGAPLGNVVAAGNAIIDKMDIPSDVTIQV 851

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                          G +GV+I  I + I +  +F+   +    I ++   ++  L    +
Sbjct: 852  SGSFEDQQDSFRDLGTLGVLI-IILVFIVMAAQFESLTYPFILILSVPFAMSGVLMALFI 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++ ++   + LIG  V + +V+ D     +       S  + +  +    L   +
Sbjct: 911  TNTTLSVMSLLGSIMLIGIVVKNGIVLID---YTILCRERGQSVLNAVVTAGKSRLRPVL 967

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+M   + ++PMAV    G  +    AI +  G+ V+   ++     +         K 
Sbjct: 968  MTTMTTILGMIPMAVSTGQGAEMWSPMAIAVIGGLAVSTILTLIYVPTMYCIFGGVGIKR 1027

Query: 831  AR 832
             R
Sbjct: 1028 QR 1029


>gi|303328166|ref|ZP_07358605.1| multidrug RND efflux transporter, permease protein MdtB
           [Desulfovibrio sp. 3_1_syn3]
 gi|302861992|gb|EFL84927.1| multidrug RND efflux transporter, permease protein MdtB
           [Desulfovibrio sp. 3_1_syn3]
          Length = 1080

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/642 (11%), Positives = 176/642 (27%), Gaps = 30/642 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GLL           +   P                    +     
Sbjct: 35  RPIATSLLMVALLLSGLLA-----YRSLPVAALPQIDYPTIQ---------VQTLYPGAS 80

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  S   +    +V   +   
Sbjct: 81  PDVIAAVVTAPLERQFGIMPGLVQMSSLSSAGASVITLQFDLSIALDVAEQEVQAAINAA 140

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +          +++   +             +  +   +I        
Sbjct: 141 DNLLPNDLPNPPVYNKVNPADPPIVT-LAVTSDAMPLTRLEDLVDTRLAQKISQLPGVGL 199

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L     T A +       N +     F       +      
Sbjct: 200 VTLSGGQRPAVRVQVNPKALAGAGLTLADVRSAIASANVNDAKGSFDGPERASTIDANDQ 259

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E +   +               V    +      +      +             
Sbjct: 260 LSSAQEYARTIIGYKDGAPLRLKDVADVLEGAENARLAAYVASAGADGKDAFR------- 312

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +     ++   L  +L+          V          +    
Sbjct: 313 ----PAIVLSVQRQPGANVINVADSVTRLLPVLQQTLPGNVEVRVVTDRTTTIRATVHDV 368

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV+ V+++ +   +  ++   ++ L+++ +L ++ L G +L   ++  +V+
Sbjct: 369 QLELLLAVALVIWVIWLFLRNVEATIIPALAVPLSLVGSLGVMYLAGFSLNNLTLMALVI 428

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     + +    +   G  +   TI    I+ +   + L F G 
Sbjct: 429 ATGFVVDDAIVVIENISRYLEQGERPLQAALKGAGQIGFTIISLTISLVAVLIPLLFMGD 488

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDCI 538
             G   R FA+T+ ++ILIS   ++++   +    +   +     +        L+    
Sbjct: 489 VAGRLFREFAVTLAVTILISAVISLTLTPMLCAVMLRPERHAGKKEEGRFFSRLLLWYEH 548

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            + ++ A         L ++    +L+          +    +  +A  P D S      
Sbjct: 549 RLDWVFAHQRLTLGVALGTLALTVVLYIVVPKGFFPVQDTGVIQGIAEAPQDTSFTAMAE 608

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              Q+ D+  Q+   E             S+  +R+   +K 
Sbjct: 609 RQHQLADLILQDPAVESVVFFVGVDGINQSLGTSRLTVELKP 650



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 7/150 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +     + L +  +LG   L G   N   + A++   G+ V+D +VV + +
Sbjct: 385 LFLRNVEATIIPALAVPLSLVGSLGVMYLAGFSLNNLTLMALVIATGFVVDDAIVVIENI 444

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +             K   +     +  +++    ++P+   G   G +   FA+ +
Sbjct: 445 ---SRYLEQGERPLQAALKGAGQIGFTIISLTISLVAVLIPLLFMGDVAGRLFREFAVTL 501

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           A  I+++A  S+    P+L  +     ++A
Sbjct: 502 AVTILISAVISL-TLTPMLCAVMLRPERHA 530



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 76/221 (34%), Gaps = 8/221 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +  +  + +      +    +  V     E+     ++       +         I  +
Sbjct: 832  GQFPVATISFNVAHDSSLGAAVNAVLAVEKELGLPPALRTQFQGAAQAFLSSTDNQIWLI 891

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + + + M I + + ++ Y     I + +    +   L    L  +E  +  +  ++ LIG
Sbjct: 892  LAAIVTMYIVLGVLYESYIHPVTILSTLPSAGVGALLALM-LADMELGVVGIIGIILLIG 950

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ D   +              I ++    L   + T+MAA +  LP+ +   
Sbjct: 951  IVKKNAIMMIDFALE--AERKEGKPPLAAIRQACLLRLRPILMTTMAALLGALPLMIGWG 1008

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G  +     + M  G+VV+   ++F    I L+      +
Sbjct: 1009 MGAELRRPLGVTMVGGLVVSQVLTLFTTPVIYLWFDRMSLR 1049



 Score = 40.8 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 41/442 (9%), Positives = 112/442 (25%), Gaps = 23/442 (5%)

Query: 84   EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
             G+   +     +++T+       ++  A  +   L    + L         V     E 
Sbjct: 630  VGVDGINQSLGTSRLTVELKPLSERDARAPAIAKRLMERAASLPGLTLYMQPVQDLTIED 689

Query: 144  SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
             +  +Q           +    + R         E         +         +     
Sbjct: 690  RVSRTQYQFTVEALSREQLQEWVPRVVRALSERPELEHVTSDLQKPGRMAWLNINRDAAG 749

Query: 204  QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            +L  + + +           +  +  +    +       V  +  +    +         
Sbjct: 750  RLGISMSDIDNALYD--ALGQRLISTIFTQTNQYKVVLEVAPRFRLGPAAIENIHVRGST 807

Query: 264  KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
                P+  I+  E    +     +                +      A+           
Sbjct: 808  GDPVPLTSIATLEERPAQLSVARQGQFPVATISFNVAHDSSLGAAVNAV----------- 856

Query: 324  TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
                   LA     G  P      +         +D+      A +  + +++  +   Y
Sbjct: 857  -------LAVEKELGLPPALRTQFQGAAQAFLSSTDNQIWLILAAIVTMYIVLGVLYESY 909

Query: 384  GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
                 +        V   LAL+        +  I  I+L   +  ++ ++++  +  E +
Sbjct: 910  IHPVTILSTLPSAGVGALLALMLADMELGVVGIIGIILLIGIVKKNAIMMIDFALEAERK 969

Query: 444  KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISM 500
            + +    ++          I  + + AL+  + L      G    R   +TM   +++S 
Sbjct: 970  EGKPPLAAIRQACLLRLRPILMTTMAALLGALPLMIGWGMGAELRRPLGVTMVGGLVVSQ 1029

Query: 501  FTAISIVRAMMIFIIRYKKMKS 522
               +     + ++  R      
Sbjct: 1030 VLTLFTTPVIYLWFDRMSLRLR 1051


>gi|218549492|ref|YP_002383283.1| multidrug efflux system subunit MdtB [Escherichia fergusonii ATCC
           35469]
 gi|226700676|sp|B7LV39|MDTB_ESCF3 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|218357033|emb|CAQ89665.1| multidrug efflux system, subunit B [Escherichia fergusonii ATCC
           35469]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 170/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|212633910|ref|YP_002310435.1| aminoglycoside efflux pump [Shewanella piezotolerans WP3]
 gi|212555394|gb|ACJ27848.1| Aminoglycoside efflux pump (Acriflavine resistance protein),
           putative [Shewanella piezotolerans WP3]
          Length = 1044

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/678 (10%), Positives = 185/678 (27%), Gaps = 46/678 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +GL+        Q  +D++P   P               + +    
Sbjct: 8   RPVFACVISIVIVLLGLISMF-----QLPIDQYPYITPP-------------QVKISASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
               +    +  +  L   L     +   S +   +    +T++F      +  A     
Sbjct: 50  PGATSTTAAESVATPLEQELNGLPNMIYMSSKSTNSGSSNVTITFDVGTNPDLAAVDAQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q     L +D +   +  + E  + ++      +      I  S          +   
Sbjct: 110 STQQATGSLPIDVQTEGVSVSKEASVELLKLALTSEDERYDEIYLSNYATINIQSALKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +   +      +    +P  +     TT  +       N        G +   D+ 
Sbjct: 170 PGVGRVRNTGARSYSMRIWLNPDTMAGYGLTTTDVIDAIKAQNKESPAGSIGSQPNADTL 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +     +S                +    I                 +    +  
Sbjct: 230 SMTLPITAAGRMS-------------SVPQFNEIIVRANSDGSIIRLRDIAKVELGSSAY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A L           V          
Sbjct: 277 TLQSQLNGNNATILQVYLLPGANALEVTKKVKAEMAKLSQKFPQGMNWEVFFDASVFIEN 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I TLA +   G T+   S+
Sbjct: 337 SIEEVVKTLIEALVLVIVVVFLFLQNLRATLIPTIAVPVSLIGTLAAMLAFGFTINTVSL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +    +    S   +  +        +  +++      V 
Sbjct: 397 LALVLAIGIVVDDAIVVVENVERLMHENGLSPAEATKVAMKELSGALVATSLVLAAVFVP 456

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINP 527
           + F     G   R FA+ + +++LIS   A+++  A+   +++          K I+   
Sbjct: 457 VSFLSGITGIMYREFAVAITVAVLISTVVALTLSPALCALLLKPDDKATSGLFKWINDRL 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        + +    A+   +  +++     + +          + +G   +      
Sbjct: 517 DTLTSKYVGLVVLTNKHAKRSYLMFALMVGGVYLIMSSLPSSFMPDEDQGRFFIDASLPN 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++  +  L+  +   ++              +    +       + +          
Sbjct: 577 GATVNRTQDVLKKAEAIVLAHPAVAYSFTLAGENRRSGSNQANGQFEIILKPWSERAEND 636

Query: 648 LSTIQNTEIVGPKISREL 665
            +  +    +   +   L
Sbjct: 637 ATVQKVMNDIKQDLHDVL 654



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/211 (17%), Positives = 86/211 (40%), Gaps = 10/211 (4%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +   P    A   V++ +++    ++P         +  +  +   +  I  V ++ + +
Sbjct: 821  INASPASGYASGDVIKAIERVAKPMLPDEFSYEWTGITYQEVQSANQTAI-AVTLAMLFV 879

Query: 681  LIYIWIRFK-WYFALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
             +++   ++ W   +   +   I  +  +LG   + G+E NL    A + LIG +  + +
Sbjct: 880  FLFLAALYESWTLPIAVLLIAPIAMLGASLGTL-ISGMESNLFFQVAFIALIGMAAKNSI 938

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ +      +L+    S  D   ++ N      + TS+A  + VLP+ +    G     
Sbjct: 939  LIVEFAN---QLHQEGKSRLDSAIEAANMRFRPILMTSLAFILGVLPLVLSVGPGAVSRQ 995

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            S +IP+  G++ A +  I +     +    W
Sbjct: 996  SISIPILCGMIFATTVGIVLVPLFFVTTAGW 1026



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  TL     FG   N  ++ A++  IG  V+D +VV + +     
Sbjct: 363 LRATLIPTIAVPVSLIGTLAAMLAFGFTINTVSLLALVLAIGIVVDDAIVVVENV--ERL 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAFG--IV 806
           ++   +S  +    ++ E  G  V TS+      +P+  + G + I      +A    ++
Sbjct: 421 MHENGLSPAEATKVAMKELSGALVATSLVLAAVFVPVSFLSGITGIMYREFAVAITVAVL 480

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++   ++ ++  +   +  
Sbjct: 481 ISTVVALTLSPALCALLLK 499


>gi|194431357|ref|ZP_03063649.1| multidrug resistance protein MdtB [Shigella dysenteriae 1012]
 gi|194420182|gb|EDX36259.1| multidrug resistance protein MdtB [Shigella dysenteriae 1012]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|157161566|ref|YP_001458884.1| multidrug efflux system subunit MdtB [Escherichia coli HS]
 gi|167008955|sp|A8A1U7|MDTB_ECOHS RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|157067246|gb|ABV06501.1| multidrug resistance protein MdtB [Escherichia coli HS]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 170/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +  +     +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSIAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|301643527|ref|ZP_07243571.1| putative ATP synthase F0, A subunit [Escherichia coli MS 146-1]
 gi|301078100|gb|EFK92906.1| putative ATP synthase F0, A subunit [Escherichia coli MS 146-1]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|262368847|ref|ZP_06062176.1| nodulation protein [Acinetobacter johnsonii SH046]
 gi|262316525|gb|EEY97563.1| nodulation protein [Acinetobacter johnsonii SH046]
          Length = 1034

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 55/536 (10%), Positives = 149/536 (27%), Gaps = 39/536 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP       +          +      
Sbjct: 9   KYPVFTIMMMFCLMVLGLAS-----WQRMGVEEFPDVDFPFVV---------VYTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +      +    +  + I   F         A  V   +  
Sbjct: 55  SPETVESEITKKMEDQINTISGLKQVISQSSEGLSTIIAEFDLDVSSAIAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   + +  ++        +++              E S  + ++ + Q        
Sbjct: 115 VTAQFRDEIQDPIVERYDPSANAVMSIVLESQN--MSLKELSSYLDQRIVPQFRTISGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  + +P +L+       ++                             
Sbjct: 173 TVNLLGDAKRQIRIQIEPEKLQSFGIGIDQIINTLKAE--------------------NV 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V       G                   D+          +     +I    A +    
Sbjct: 213 EVPGGTLKHGNSELVVEIKSKVIHPLAFGDLVIANKNGVPIYLRQVASISDSQAELESSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L             +  +    ++ A    A ++          V   +      S + 
Sbjct: 273 YLDGKTAVAIDILRSSDSNVIDVVDGAYETLADIQKQLPEGTTAKVVVDSSKGIRNSITD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +   +   ++ + ++ TL  + + G ++ + ++  + 
Sbjct: 333 VARTIIEGAALAVLIVLLFLGSFRSTAITGMTLPIALLGTLTFIWIFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I   +   +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHSDMGKDPVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
              G     F +T+  ++LISMF + ++   +                    F  I
Sbjct: 453 GIIGRFFYQFGVTVSTAVLISMFVSFTLDPMLSAHWAEQHNPHKPPNRVKHFFNWI 508



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 74/219 (33%), Gaps = 8/219 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +                E +     ++   +T +        I   +       +  +
Sbjct: 282 IDILRSSDSNVIDVVDGAYETLADIQKQLPEGTTAKVVVDSSKGIRNSITDVARTIIEGA 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           A+A+LI +     +        TL + +  TL F  +FG   N+  + A+   IG  ++D
Sbjct: 342 ALAVLIVLLFLGSFRSTAITGMTLPIALLGTLTFIWIFGFSINMMTLLALSLSIGLLIDD 401

Query: 737 KVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+  ++               E     + T++      LP+A  GG +  
Sbjct: 402 AIVV----RENIVRHSDMGKDPVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGIIGR 457

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               F + ++  ++++   S  +   +     +    + 
Sbjct: 458 FFYQFGVTVSTAVLISMFVSFTLDPMLSAHWAEQHNPHK 496



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 82/276 (29%), Gaps = 9/276 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                  L        +                +   +   L S+   + S       +  
Sbjct: 750  ETYDVNLRLTETARSLPSDVQNLYLTSQKTDANGQALLIPLSSVAHLEQSLGASQINRRD 809

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            L R      ++  +         K  E         +              G     I+ 
Sbjct: 810  LAREVLVEANTAGRPAGDIGADIKKIEDNFDLPAGYSFDTQGSNKDMAESAGYAMTAITL 869

Query: 678  IAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              + IYI +      +      + +L L +        LF    NL ++  ++ L+G   
Sbjct: 870  SIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFNSTMNLFSIIGIIMLMGLVT 929

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
             + +++ D ++   K     +     I  +    L   + T+ A  + ++P+A+    GG
Sbjct: 930  KNAILLIDFIK---KAMDHGVDRYQAIIDAGKTRLRPILMTTSAMVMGMVPLALGLGEGG 986

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                  A  +  G++ +   ++ +   I  ++ D+ 
Sbjct: 987  EQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDFN 1022


>gi|237718701|ref|ZP_04549182.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229451833|gb|EEO57624.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 1052

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/569 (12%), Positives = 167/569 (29%), Gaps = 41/569 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNAVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++  S   +       + ++ +       
Sbjct: 115 VSSQLPDDVENPIIFKFSTDMIPIVLLSVQANESQSALYKILD---DRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     T   +S      N +  G  F +     +   + 
Sbjct: 172 TVSISGAPQREIQVYCDPNKLEAYHLTIETISSIIGAENKNIPGGNFDIGSETYALRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  +++ + +                            F      I   +       
Sbjct: 232 EFDDSRQLADVVVGTH--------------------NGANVFLRDVARIVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKIGVIVDTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAVSGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G +    +     M   + IS   A+S+   +    +   KK   +     +      D 
Sbjct: 452 GMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQKKPSKMFKLFFTPIEKALDG 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFT 566
           +   + +   W V    +  +  I     
Sbjct: 512 LDTWYAKMLNWAVRHRPIVIVGCIAFFIV 540



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 90/245 (36%), Gaps = 7/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   +V  +    +SV  ++ +     ++ + +P     
Sbjct: 256 DVARIVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISKKVADALPRLQKNLPSDVKI 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +         I      V+ + + ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GVIVDTSDNILNTIDSLTETVVYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AVSGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++       P+ +     G +       M   + ++  +++ +   +   +   + 
Sbjct: 433 VIASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQK 492

Query: 829 KNARI 833
           K +++
Sbjct: 493 KPSKM 497



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 80/250 (32%), Gaps = 8/250 (3%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                   SV   ++  +            ++  +V +      +     V    K     
Sbjct: 782  IYNAQGQSVRVKDVGKVVERFAPPTIERKDRERIVTVSAVISGAPLGDVVAAGNKVIDKM 841

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
             +P                     G + ++I  + + I +  +F+   +    + +L   
Sbjct: 842  DLPGDVTIQISGSYEDQQDSFRDLGTLAILI-VVLVFIVMAAQFESLTYPFIIMFSLPFA 900

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
             +  L          ++ ++   + LIG  V + +V+ D +          ++  + +  
Sbjct: 901  FSGVLMALFFTNSTLSVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGLAVLNSVVT 957

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + T+    + ++PMA+ GG    +    AI +  G+ ++   ++ +   + 
Sbjct: 958  AGKSRLRPVLMTTATTVLGMIPMAIGGGQGSEMWSPMAIAVIGGLTISTVLTLILIPTLY 1017

Query: 821  LFIYDWRAKN 830
                    KN
Sbjct: 1018 CVFAGTGIKN 1027


>gi|16130015|ref|NP_416579.1| multidrug efflux system, subunit B [Escherichia coli str. K-12
           substr. MG1655]
 gi|89108895|ref|AP_002675.1| multidrug efflux system, subunit B [Escherichia coli str. K-12
           substr. W3110]
 gi|170019598|ref|YP_001724552.1| multidrug efflux system subunit MdtB [Escherichia coli ATCC 8739]
 gi|170081705|ref|YP_001731025.1| multidrug efflux system, subunit B [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901265|ref|YP_002927061.1| multidrug efflux system, subunit B [Escherichia coli BW2952]
 gi|307312360|ref|ZP_07591994.1| acriflavin resistance protein [Escherichia coli W]
 gi|312973677|ref|ZP_07787849.1| multidrug resistance protein mdtB [Escherichia coli 1827-70]
 gi|331653504|ref|ZP_08354505.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli M718]
 gi|331683760|ref|ZP_08384356.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli H299]
 gi|3025164|sp|P76398|MDTB_ECOLI RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|189081604|sp|B1IYZ9|MDTB_ECOLC RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|226700672|sp|B1X7H1|MDTB_ECODH RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|259495549|sp|C4ZSG3|MDTB_ECOBW RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|1736781|dbj|BAA15929.1| multidrug efflux system, subunit B [Escherichia coli str. K12
           substr. W3110]
 gi|1788390|gb|AAC75136.1| multidrug efflux system, subunit B [Escherichia coli str. K-12
           substr. MG1655]
 gi|22038187|dbj|BAC06608.1| multidrug transporter [Escherichia coli]
 gi|169754526|gb|ACA77225.1| acriflavin resistance protein [Escherichia coli ATCC 8739]
 gi|169889540|gb|ACB03247.1| multidrug efflux system, subunit B [Escherichia coli str. K-12
           substr. DH10B]
 gi|238861823|gb|ACR63821.1| multidrug efflux system, subunit B [Escherichia coli BW2952]
 gi|260448824|gb|ACX39246.1| acriflavin resistance protein [Escherichia coli DH1]
 gi|306907531|gb|EFN38034.1| acriflavin resistance protein [Escherichia coli W]
 gi|310332272|gb|EFP99507.1| multidrug resistance protein mdtB [Escherichia coli 1827-70]
 gi|315061350|gb|ADT75677.1| multidrug efflux system, subunit B [Escherichia coli W]
 gi|315136709|dbj|BAJ43868.1| multidrug efflux system subunit MdtB [Escherichia coli DH1]
 gi|315618146|gb|EFU98737.1| multidrug resistance protein mdtB [Escherichia coli 3431]
 gi|323378070|gb|ADX50338.1| acriflavin resistance protein [Escherichia coli KO11]
 gi|331048353|gb|EGI20429.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli M718]
 gi|331078712|gb|EGI49914.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli H299]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|256112801|ref|ZP_05453722.1| acriflavin resistance protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|265994244|ref|ZP_06106801.1| acriflavin resistance protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|262765357|gb|EEZ11146.1| acriflavin resistance protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|326408318|gb|ADZ65383.1| acriflavin resistance protein [Brucella melitensis M28]
 gi|326538033|gb|ADZ86248.1| acriflavin resistance protein [Brucella melitensis M5-90]
          Length = 1043

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 157/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+   +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPAALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 72/220 (32%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++   +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPAALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   +      +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFREFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    +  G+ +A  +++++  P+   +     K  
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYV-TPVAYLLLGRFTKPK 1021


>gi|170703251|ref|ZP_02894051.1| acriflavin resistance protein [Burkholderia ambifaria IOP40-10]
 gi|170131839|gb|EDT00367.1| acriflavin resistance protein [Burkholderia ambifaria IOP40-10]
          Length = 1102

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/583 (12%), Positives = 157/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    S   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMI-VSLTSETSSPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSVSGSANPAVRVELEPHALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                 +   +  + +  +
Sbjct: 217 --KGAIEFGPKHYQLYTNDQASHASQYSDLVVAYRNGAAVRLSDLSEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIETIDRVRTALPQLTASLPADITVTPVLDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAISLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENITRHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R       +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLREPHDAHEEGRLGRFLERFFTRMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   +L  +     +  +   Y I  KG     
Sbjct: 515 RGYERSLSWALRRPLLVLLILFATIGLNVYLYIIVPKGFFPQQ 557



 Score = 85.9 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + IS + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAISLVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---TRHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+ + S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLAVSLTVTP 483



 Score = 46.2 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 94/220 (42%), Gaps = 6/220 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + +I    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSLNNQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      +      S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRNGNK--SSYDAIHEACLLRFRPIMMTTMAALLGALPLAFGHGDGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +     I +A G++++   +++    + L++   R +  +
Sbjct: 1047 LRAPLGIAIAGGLIMSQVLTLYTTPVVYLYMDRLRVRFEK 1086


>gi|188495810|ref|ZP_03003080.1| multidrug resistance protein MdtB [Escherichia coli 53638]
 gi|188491009|gb|EDU66112.1| multidrug resistance protein MdtB [Escherichia coli 53638]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGTNIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|227887131|ref|ZP_04004936.1| multidrug resistance protein MdtB [Escherichia coli 83972]
 gi|227835481|gb|EEJ45947.1| multidrug resistance protein MdtB [Escherichia coli 83972]
 gi|307554148|gb|ADN46923.1| multidrug resistance protein MdtB [Escherichia coli ABU 83972]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|83591185|ref|YP_431194.1| acriflavin resistance protein [Moorella thermoacetica ATCC 39073]
 gi|83574099|gb|ABC20651.1| Acriflavin resistance protein [Moorella thermoacetica ATCC 39073]
          Length = 1050

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/558 (10%), Positives = 161/558 (28%), Gaps = 40/558 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    L ++  ++  +G++      L +  +D  P                         
Sbjct: 9   KRPVALTMVVLVVILMGVVS-----LSRLKVDLLPDMKLPYA---------AVITSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++    ++             + I L F   +  +     +   +  
Sbjct: 55  GPEEIEKTVTRPLEDALGTVQGIKNIRSMSMSGSSVIILEFNWGQDMDFATLNMREKIDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L     K +++        ++    + D       + +   ++ R++++   +   
Sbjct: 115 IESRLPDGVDKPMVMKMDPNMFPVMTLALHGDLDQQRLKDIAENTVKNRLERL---DGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +  ++    DP+RL+    + +++       N +  G        +       
Sbjct: 172 AVNVTGGLEREIQVLVDPARLQTFGLSISQVVQALQTENITSSGGQVTDAGKKVLVRVNG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                      +  +     G           +    A      
Sbjct: 232 EFN--------------------NLDQIRQVGLTTPGGAVVRLGDVATVKDTTAEQKQFA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +             +   +              L+    P                + + 
Sbjct: 272 LFDGKPAIGLSIQKQTNGNTVQISHAVKKALQELQQELPPGVTIEAVNDQSKYIESAINT 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   L ++++F+ +   +  ++   +I ++VI T  LL     TL + ++ G+ 
Sbjct: 332 VYRDMILGGLLAMLIIFLFLRSFRSTIIIGLTIPISVITTFVLLYFNHMTLNMMTLGGLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIG  VD  I+V + I    +  Q    +   G       +  S +T +   + + F  
Sbjct: 392 LGIGRMVDDAIVVFDNIYRHRQGGQDAMTAAAGGAQEVTMAVVASTLTTVGVFLPIAFVE 451

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G         A+T+  S+L S+  ++S+  A+   I++             R  L+    
Sbjct: 452 GLAAQIFGPLALTVTCSLLASLAVSLSVTPALASRILKGNLPPEATAARGFRQHLVTGYW 511

Query: 539 AIQFMRARFWGVGISILF 556
             +   +    +  ++  
Sbjct: 512 MTRLSDSYRRFLAWALNH 529



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 80/223 (35%), Gaps = 9/223 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V              V++ +++++  I              ++  E   +  + +I
Sbjct: 809  NQDRVASITANLGDRPLGAVMQDIRREVARINLPPGYSIEYTGQNQMMMETFGQLGLALI 868

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGY 732
            ++   + + +  +F+       +    + +  T    AL   G  F++     ++ L+G 
Sbjct: 869  LAIALVYMIMAAQFESLLHPF-VIMFAIPVAITGVILALLATGRTFDVVVFMGIIMLVGI 927

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
             +++ +V+ D +     L       R+ I  +    L   + T++   +++LP+A+    
Sbjct: 928  VLSNAIVLVDYIN---ILRRRGTPRREAILIAGGNRLRPILMTALVTILAMLPLAMGIGE 984

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +       +  G+ V+   ++ +   +     D   +  R
Sbjct: 985  GAEMNAGLGTAVIGGLTVSTILTLVLVPVLYTLFEDLGQRLGR 1027



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 71/211 (33%), Gaps = 4/211 (1%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           V + +++   E+ P  TI+        I   +       ++   +
Sbjct: 283 IQKQTNGNTVQISHAVKKALQELQQELPPGVTIEAVNDQSKYIESAINTVYRDMILGGLL 342

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           AMLI       +   +    T+ + +  T        +  N+  +  +   IG  V+D +
Sbjct: 343 AMLIIFLFLRSFRSTIIIGLTIPISVITTFVLLYFNHMTLNMMTLGGLSLGIGRMVDDAI 402

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           VV+D +    +                 E     V +++      LP+A   G     F 
Sbjct: 403 VVFDNI---YRHRQGGQDAMTAAAGGAQEVTMAVVASTLTTVGVFLPIAFVEGLAAQIFG 459

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            P+A  +  +  +S+ ++  +   +     K
Sbjct: 460 -PLALTVTCSLLASLAVSLSVTPALASRILK 489


>gi|315294404|gb|EFU53752.1| putative ATP synthase F0, A subunit [Escherichia coli MS 153-1]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|293446430|ref|ZP_06662852.1| multidrug efflux system subunit MdtB [Escherichia coli B088]
 gi|291323260|gb|EFE62688.1| multidrug efflux system subunit MdtB [Escherichia coli B088]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|218690133|ref|YP_002398345.1| multidrug efflux system subunit MdtB [Escherichia coli ED1a]
 gi|254810276|sp|B7MWY8|MDTB_ECO81 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|218427697|emb|CAR08604.2| multidrug efflux system, subunit B [Escherichia coli ED1a]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|194428890|ref|ZP_03061424.1| multidrug resistance protein MdtB [Escherichia coli B171]
 gi|194413058|gb|EDX29346.1| multidrug resistance protein MdtB [Escherichia coli B171]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|312967310|ref|ZP_07781526.1| multidrug resistance protein mdtB [Escherichia coli 2362-75]
 gi|312288118|gb|EFR16022.1| multidrug resistance protein mdtB [Escherichia coli 2362-75]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYQALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALNGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFERIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGQGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +                 E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALNGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|71082896|ref|YP_265615.1| AcrB/AcrD/AcrF family protein (acriflavin resistance) [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062009|gb|AAZ21012.1| AcrB/AcrD/AcrF family protein (Acriflavin resistance) [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 1040

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/682 (10%), Positives = 192/682 (28%), Gaps = 37/682 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  ++   G+         Q  +   P  +    + + +D         +  
Sbjct: 9   RRPVVAWVMSLILIVFGIF-----VFSQLPVRELPEGLQPPVVQVKVD--------YKSA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  +    +++   ++       +     + I + F      +N A+ +   +  
Sbjct: 56  SAPIIDQEVTQVIEDVIGGVEGIKNINSTSENGSSSINVEFNPDIDLDNAANDIRERVAR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  +     ++  +    + +    +        +E    + R  +DQ    ++  
Sbjct: 116 VVDRLPSEAAAPQILKQSAGFSTTMWLAVSSATWSD--LELGDYVERYLVDQFSSVKNVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    DP +L     T  ++       N S                   
Sbjct: 174 TISTGGLRDLSVRIWIDPIKLAANNLTIQEVEGAIRKENVSLPAGTLEA--------TNI 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +   ++ S   +         K    VV +S           V    + +        +
Sbjct: 226 DLILNLDKSYNDIEKLKTLPIKKNQNSVVRLSD-------IANVELGPVSEKNLFKAQSK 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         K+  S     +        ++          V          +   
Sbjct: 279 DALDLKTVGIGIYAKSGASTVELSKEISKKIEEVKKTLPDDLNIEVAFNRATYVGTAIDE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+I++++ +   K  +V   ++ +++I +   L L G ++ +  +   +
Sbjct: 339 VYKTLIIAFILVVIIIYLFLGNIKAVIVPAVALPVSLIASFLGLYLFGLSINIFVLLSFI 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IG+  D ++++ + I       +S   +   G  +    I  + +  +   + L F  
Sbjct: 399 LAIGIITDDSVIMTDAIYRRIENGESPLIAAYKGSKQISFAIIATTLILVAVFIPLIFID 458

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSRFFLI 534
              G   R  AI + +S+ +S F A+++   +    ++ +  ++                
Sbjct: 459 GIAGTLFRETAIALSVSVAVSSFVALTLSPMLASKFLKKEPKQNFIVTKFDKFFKSLLKF 518

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            +     ++  +   +   +   I S  L              G+ L +           
Sbjct: 519 YEETLGYWLNKKKIIISFIVFTIIISGVLFSITKKELLPLEDRGVYLVLGFTDEGSSFEY 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                      +       +  +   +   PG    +      +   + +        + 
Sbjct: 579 TEKRAEDVEKRLIPLLQAEDSPYKRFIMRVPGFGSNKNSFNSFIIIALLDEWAERDKSSQ 638

Query: 655 EIVGPKISRELIRKGIVGVIIS 676
            I+   I + +     V   IS
Sbjct: 639 TIMREAIGKIVTVPETVAFPIS 660



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/210 (9%), Positives = 62/210 (29%), Gaps = 3/210 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V  +   ++ +   + ++L                 +  +           + + +++ 
Sbjct: 253 VVRLSDIANVELGPVSEKNLFKAQSKDALDLKTVGIGIYAKSGASTVELSKEISKKIEEV 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +     I+        +   +       +I   + ++I           +     L 
Sbjct: 313 KKTLPDDLNIEVAFNRATYVGTAIDEVYKTLIIAFILVVIIIYLFLGNIKAVIVPAVALP 372

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  +     LFG+  N+  + + +  IG   +D V++ D +    +      S     
Sbjct: 373 VSLIASFLGLYLFGLSINIFVLLSFILAIGIITDDSVIMTDAI---YRRIENGESPLIAA 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            K   +     + T++      +P+    G
Sbjct: 430 YKGSKQISFAIIATTLILVAVFIPLIFIDG 459



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 63/167 (37%), Gaps = 10/167 (5%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             +   ++ +   + +   F  +      + T+ L +   L F        N+ +  A++ 
Sbjct: 864  FIIFGLAFLTAYLVMAATFNSFIHPFIIMLTVPLALFGGLVFILFLNSSINIFSQIALVI 923

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG S  + +++ D      +L T   +    + ++        + TS++  I+++P+ +
Sbjct: 924  LIGISTKNSILIVD---YANQLRTAGKNIETSVKEACQLRFRPIMMTSISTMIAMMPLVI 980

Query: 789  WGGSVIGS------FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                              +  G++++   ++++   + L +     +
Sbjct: 981  GNIGPGAGEASRLAVGATILGGMIISTFFTLYVTPTMYLVLAKNTKR 1027


>gi|295839919|ref|ZP_06826852.1| protein-export membrane protein SecD [Streptomyces sp. SPB74]
 gi|295827706|gb|EDY43681.2| protein-export membrane protein SecD [Streptomyces sp. SPB74]
          Length = 600

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 110/560 (19%), Positives = 214/560 (38%), Gaps = 61/560 (10%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD- 64
             +IL +++   G +    +  P+                LG+DL GG+ + L+   +  
Sbjct: 21  LALILVALVALTGGMFLSGHTTPR----------------LGIDLAGGTSITLKAQNEPG 64

Query: 65  ----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFL 119
                    +    D +   +   G+    ++   N  I ++      ++   ++V    
Sbjct: 65  QKNAVNKTNMDTAVDIINRRVNGLGVSEAEVQTQGNDHIVVNIPRGTNEKQAREQVGTTA 124

Query: 120 QGVNSKL-------------------------------NVDPKKNLLVTTTEKEISIVLS 148
           Q     +                                     +     +    S   +
Sbjct: 125 QLYFRPVLQVTAGTPAADPSGSPSPSATSSPSGKNSPSPKSSAGSGGSGASPNAGSSASA 184

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                     A+ Q+++             +              P   D          
Sbjct: 185 GAGDSSPQGRAVPQALKADATPSAGAKDDGAAKGPDAKASPSPDAPTAPDDKTTALFASL 244

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
                  +V      K     V    +       +    E+ G +++ A A  D + ++ 
Sbjct: 245 DCSNKAQRVKATTGVKPGASMVACGNEGGQWAKYLLGPAEVEGKNVSKADAVLDTQRNQW 304

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK----AQISGNFT 324
           +V + F+  G ++F  +T     +   +     VL   V++    S +    A+ISG+F+
Sbjct: 305 IVQMKFNGEGKKKFSSITGKLAQQQSPMNQFAIVLDGDVVSAPSVSERLGGSAEISGSFS 364

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E+A  LA +L  G+LP+  +      V A LG + ++ G  A   GL L+VL+++V Y 
Sbjct: 365 QESAKDLANVLSYGALPLTFHEETVTTVTAALGGEQLHAGLIAGAVGLALVVLYLVVYYR 424

Query: 385 KWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
              L+A  S+ ++ ILT  +++LLG      L LP++ G ++ IG+  DS I+  ER+R+
Sbjct: 425 GLALIAIASLVVSGILTYTIMTLLGPGIGFALNLPAVCGAIVAIGITADSFIVFFERVRD 484

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E R+ +++  +++ G+ RA  TI  S+  + +A  VLF    G V+GFA T+GL+ L+ +
Sbjct: 485 EVREGRTLRPAVERGWPRARRTILVSDFVSFLAAAVLFVVTVGKVQGFAFTLGLTTLLDV 544

Query: 501 FTAISIVRAMMIFIIRYKKM 520
            T     + ++  + R K  
Sbjct: 545 VTVFLFTKPLLTLLARRKFF 564



 Score = 95.1 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 90/267 (33%), Gaps = 10/267 (3%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
               +    + +G  +   +  +        +    +  GD+       E+         
Sbjct: 302 NQWIVQMKFNGEGKKKFSSITGKLAQQQSPMNQFAIVLDGDVVSAPSVSERLGGSAEISG 361

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                +   +  ++      +      +    V   +  E +  G++   +    +++Y+
Sbjct: 362 SFSQESAKDLANVLSYGALPL--TFHEETVTTVTAALGGEQLHAGLIAGAVGLALVVLYL 419

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVV 740
            + ++   AL AI +L++    T     L G       NL AV   +  IG + +  +V 
Sbjct: 420 VVYYR-GLALIAIASLVVSGILTYTIMTLLGPGIGFALNLPAVCGAIVAIGITADSFIVF 478

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++R+R  ++      + R  +++         + +   +F++   + V     +  FA  
Sbjct: 479 FERVRDEVRE---GRTLRPAVERGWPRARRTILVSDFVSFLAAAVLFVVTVGKVQGFAFT 535

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWR 827
           +    ++   +      P+L  +   +
Sbjct: 536 LGLTTLLDVVTVFLFTKPLLTLLARRK 562


>gi|115351132|ref|YP_772971.1| acriflavin resistance protein [Burkholderia ambifaria AMMD]
 gi|115281120|gb|ABI86637.1| acriflavin resistance protein [Burkholderia ambifaria AMMD]
          Length = 1102

 Score =  159 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/583 (12%), Positives = 157/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    S   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMI-VSLTSETSSPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSVSGSANPAVRVELEPHALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                 +   +  + +  +
Sbjct: 217 --KGAIEFGPKHYQLYTNDQASHASQYSDLVVAYRNGAAVRLSDLSEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIETIDRVRTALPQLTASLPADITVTPVLDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAISLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENITRHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R       +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLREPHDAHEEGRLGRFLERFFTRMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   +L  +     +  +   Y I  KG     
Sbjct: 515 RGYERSLSWALRRPLLVLLILFATIGLNVYLYIIVPKGFFPQQ 557



 Score = 85.9 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + IS + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAISLVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---TRHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+ + S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLAVSLTVTP 483



 Score = 44.3 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 92/215 (42%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + +I    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSLNNQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      +      S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRNGNK--SSYDAIHEACLLRFRPIMMTTMAALLGALPLAFGHGDGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++++   +++    + L++   R
Sbjct: 1047 LRAPLGIAIAGGLIMSQVLTLYTTPVVYLYMDRLR 1081


>gi|323936880|gb|EGB33164.1| AcrB/AcrD/AcrF family protein [Escherichia coli E1520]
          Length = 1040

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/654 (10%), Positives = 170/654 (25%), Gaps = 47/654 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                 +L   I   G++           +   P                   +V     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPT-----------IQVVTPYPG 62

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D +   +    +     +              + ITL F  +   +    +V   + 
Sbjct: 63  ASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAIN 122

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  D     + +        +++   +        +    +  +   +I      
Sbjct: 123 AATNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGV 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  + +   +  L  T+  +                         G  
Sbjct: 182 GLVTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GAN 221

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                            +AN   ++ +    +                 + +       G
Sbjct: 222 VNSAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLG 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +   T ++   +   L           V          S  
Sbjct: 282 AWANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVD 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  +
Sbjct: 342 DTQFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMAL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I+V E I     K +    +   G      TI     + +   + L F 
Sbjct: 402 TIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    
Sbjct: 462 GDIVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRI 521

Query: 538 IAIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           IA             W      L ++    LL+          +    +      P   S
Sbjct: 522 IAAYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSS 581

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                    Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 582 FANMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|26248449|ref|NP_754489.1| multidrug efflux system subunit MdtB [Escherichia coli CFT073]
 gi|91211363|ref|YP_541349.1| multidrug efflux system subunit MdtB [Escherichia coli UTI89]
 gi|117624271|ref|YP_853184.1| multidrug efflux system subunit MdtB [Escherichia coli APEC O1]
 gi|170680654|ref|YP_001743064.1| multidrug efflux system subunit MdtB [Escherichia coli SMS-3-5]
 gi|218558955|ref|YP_002391868.1| multidrug efflux system subunit MdtB [Escherichia coli S88]
 gi|237704532|ref|ZP_04535013.1| multidrug resistance protein mdtB [Escherichia sp. 3_2_53FAA]
 gi|300936619|ref|ZP_07151523.1| putative ATP synthase F0, A subunit [Escherichia coli MS 21-1]
 gi|301021223|ref|ZP_07185256.1| putative ATP synthase F0, A subunit [Escherichia coli MS 69-1]
 gi|301048801|ref|ZP_07195799.1| putative ATP synthase F0, A subunit [Escherichia coli MS 185-1]
 gi|331658154|ref|ZP_08359116.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli TA206]
 gi|59798414|sp|Q8FG04|MDTB_ECOL6 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|122423274|sp|Q1R9Z6|MDTB_ECOUT RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|166233222|sp|A1ACT0|MDTB_ECOK1 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|226700668|sp|B7ME87|MDTB_ECO45 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|226700675|sp|B1LNW6|MDTB_ECOSM RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|26108854|gb|AAN81057.1|AE016763_16 Hypothetical protein yegN [Escherichia coli CFT073]
 gi|91072937|gb|ABE07818.1| hypothetical protein YegN [Escherichia coli UTI89]
 gi|115513395|gb|ABJ01470.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|170518372|gb|ACB16550.1| multidrug resistance protein MdtB [Escherichia coli SMS-3-5]
 gi|218365724|emb|CAR03460.1| multidrug efflux system, subunit B [Escherichia coli S88]
 gi|226900898|gb|EEH87157.1| multidrug resistance protein mdtB [Escherichia sp. 3_2_53FAA]
 gi|294493825|gb|ADE92581.1| multidrug resistance protein MdtB [Escherichia coli IHE3034]
 gi|300299386|gb|EFJ55771.1| putative ATP synthase F0, A subunit [Escherichia coli MS 185-1]
 gi|300398232|gb|EFJ81770.1| putative ATP synthase F0, A subunit [Escherichia coli MS 69-1]
 gi|300458200|gb|EFK21693.1| putative ATP synthase F0, A subunit [Escherichia coli MS 21-1]
 gi|307626379|gb|ADN70683.1| multidrug efflux system subunit MdtB [Escherichia coli UM146]
 gi|315285694|gb|EFU45134.1| putative ATP synthase F0, A subunit [Escherichia coli MS 110-3]
 gi|315299484|gb|EFU58735.1| putative ATP synthase F0, A subunit [Escherichia coli MS 16-3]
 gi|320195937|gb|EFW70561.1| Multidrug transporter MdtB [Escherichia coli WV_060327]
 gi|323951829|gb|EGB47703.1| AcrB/AcrD/AcrF family protein [Escherichia coli H252]
 gi|323956111|gb|EGB51863.1| AcrB/AcrD/AcrF family protein [Escherichia coli H263]
 gi|331056402|gb|EGI28411.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli TA206]
          Length = 1040

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|87302773|ref|ZP_01085584.1| preprotein translocase subunit [Synechococcus sp. WH 5701]
 gi|87282656|gb|EAQ74614.1| preprotein translocase subunit [Synechococcus sp. WH 5701]
          Length = 504

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 127/501 (25%), Positives = 217/501 (43%), Gaps = 40/501 (7%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDDFVN----GFLQMYSDELRSFLKKEGIGVFSMRQ 93
            +    + LGLDLRGGS L L+V     +       L+   + L   +   G+   +++ 
Sbjct: 21  VLFSFPLQLGLDLRGGSQLTLQVLPAGAIKTVKREQLEAVKEVLDRRVNGLGVAESTLQT 80

Query: 94  -IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
              +++ L     +     A                  +K       +  + +       
Sbjct: 81  IGDDQLVLQLPGEQDPTRAAKVFGTTALLEFR-----AQKPGTEREMQGLLRL------- 128

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
                    QS+  + +R      ++ +             P E     LR+L  +    
Sbjct: 129 -----KRQAQSVLDLSRRRTPADPAQPSAPGEPP-AQTPSFPAEDLAQALRELGVSV--- 179

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
                               L + +     + +   ++G  L  A            V +
Sbjct: 180 -------PAGAGETEQIEALLDEVNKRVVALYEPAALTGKDLVTAGRQQQQTGTGWDVTL 232

Query: 273 SFDEMGARRFFEVTRDNIGKPL-------AVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           +F+  G   F ++T+   G             +    ++       I  G A I+GNF+ 
Sbjct: 233 NFNRQGGEAFAKLTQSIAGSNRLLGIVLDGRSISEASVSQEFAAAGITGGAASITGNFSA 292

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  L   LR GSLP+ + I+E R VG  LG+++I     A +AGL L+ +FM+V+Y  
Sbjct: 293 EEARDLEVQLRGGSLPLPVKIIEVRTVGPLLGAENIRTSLVAALAGLALVAVFMVVIYRL 352

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G VA  ++ L  +  LA  +L+  TLTLP IAG +L IG+AVD+N+L+ ER++EE R  
Sbjct: 353 PGAVAVVALSLYALFNLATYALIPVTLTLPGIAGFILSIGMAVDANVLIFERVKEELRSG 412

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            ++  S+D GFS A+S+I D ++T LI+ + LF  G G V+GFA+T+G+ +L+S+FTA+S
Sbjct: 413 NTLIRSIDSGFSLAFSSILDGHVTGLISCIALFALGTGLVKGFAVTLGIGLLLSLFTALS 472

Query: 506 IVRAMMIFIIRYKKMKSIDIN 526
             R ++  ++ Y  ++     
Sbjct: 473 CTRVLLRLMMSYPTLRRPGYF 493



 Score =  107 bits (267), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 65/141 (46%), Gaps = 4/141 (2%)

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + ++   A+ A+  L L     L  +AL  +   L  +A  +  IG +V+  V++++
Sbjct: 345 FMVVIYRLPGAV-AVVALSLYALFNLATYALIPVTLTLPGIAGFILSIGMAVDANVLIFE 403

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+++ ++   +  +    ID   +      +   +   IS + +   G  ++  FA+ + 
Sbjct: 404 RVKEELR---SGNTLIRSIDSGFSLAFSSILDGHVTGLISCIALFALGTGLVKGFAVTLG 460

Query: 803 FGIVVAASSSIFIAAPILLFI 823
            G++++  +++     +L  +
Sbjct: 461 IGLLLSLFTALSCTRVLLRLM 481


>gi|85717509|ref|ZP_01048455.1| acriflavin resistance protein D [Nitrobacter sp. Nb-311A]
 gi|85695662|gb|EAQ33574.1| acriflavin resistance protein D [Nitrobacter sp. Nb-311A]
          Length = 1050

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/587 (11%), Positives = 163/587 (27%), Gaps = 40/587 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  IG++  L        + +FP   P               + ++   
Sbjct: 8   RPILAGVISVLITLIGVVAGL-----TLPVAQFPEIAPPV-------------INIQATY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                    +  +  +   +        I   S       I  +FA        A +V  
Sbjct: 50  PGASAQQSYEAIAIPIEQEVNGAPHLLYINSVSSTDGSVSIDATFAVGSDLNAAAAEVLT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV-ISHAIEQSMEIIRQRIDQIGI 176
                 +KL    +   L  T      +       +       +  S     Q I  +  
Sbjct: 110 RASRAEAKLPAAVRAQGLEITKSSRQRLGNIVLYAEDGANYDELFLSNWAETQVIKPLRR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   + +    +   +    DP ++  L  + + ++      N      + G + L +S
Sbjct: 170 VDGMGRIVNFSNMRYAMRIWLDPVKMEALAISPSTITSAIEQQNAQITTGVLGKQPLNES 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +  +  +  +              K  +    +                 +      
Sbjct: 230 TAFELQLVTQGRL-------------LKPEEFANILLRANPDGSVVRVRDVARVELGSEQ 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +    +E A      L     P     +         
Sbjct: 277 YGVRSSFDGRPSATLGIYQNPDANAVEVMEGARATMKELAKRFPPGLTYRIALDRTEFVR 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV+IV ++ +   +  L+   ++ + ++ T   ++LLG +    S
Sbjct: 337 EAIGEVVRTLFEALILVVIVTYLFLQNWRATLIPAIAVPVALVGTFGPMALLGFSFNTLS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL +GL VD  I+V E       +      +           +  + +      V 
Sbjct: 397 LLGLVLAVGLVVDDAIIVVENTERLMEEGAEPKAASREAVEEVAGPVIATTLVLAALFVP 456

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G     FA+T+ +S+LIS   ++++  A+   I++ +  ++       R  L
Sbjct: 457 VAFIPGLTGQLYNQFALTIAISVLISAVVSLTLTPALCGLILKPRAEEAERSRSWWRAPL 516

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
               + +             +   + ++ L+F       +       
Sbjct: 517 RGFNLGLDRATGGIVAAIGFLSRHLVALGLVFVAFAGLTVWMTMQRP 563



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 79/196 (40%), Gaps = 11/196 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                  ++ + K+    +      +      +   E++R     +I   + ++ Y++++
Sbjct: 305 MEGARATMKELAKRFPPGLTYRIALDRTEFVREAIGEVVRTLFEALI--LVVIVTYLFLQ 362

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +  T G  AL G  FN  ++  ++  +G  V+D ++V     +N
Sbjct: 363 -NWRATLIPAIAVPVALVGTFGPMALLGFSFNTLSLLGLVLAVGLVVDDAIIVV----EN 417

Query: 748 M-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAF 803
             +L       +    +++ E  G  + T++      +P+A   G        FA+ +A 
Sbjct: 418 TERLMEEGAEPKAASREAVEEVAGPVIATTLVLAALFVPVAFIPGLTGQLYNQFALTIAI 477

Query: 804 GIVVAASSSIFIAAPI 819
            ++++A  S+ +   +
Sbjct: 478 SVLISAVVSLTLTPAL 493



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 74/213 (34%), Gaps = 10/213 (4%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI- 686
              A       V  +I  I                 +E I  G   +I     ++I++ + 
Sbjct: 829  DTAPGASSGTVIAEIERIAEKLPSNYAVAWTEVAYQEKIAGGYAPLIFGLGVLMIFLLLA 888

Query: 687  --RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                        +    L I   +GF AL  +  ++     +L L+G +  + +++    
Sbjct: 889  GQYESVRLPFVILLATPLAIFGAIGFLALRDLPLDIFGQVGLLLLVGLAAKNAILLVA-F 947

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
             ++++      S R     +    L   + TS A  +  +P+A+    G +   S    +
Sbjct: 948  AEDLRRNQGENSLR-AAQDAARLRLRPILMTSFAFILGAVPLAIASGAGANARLSMGTAV 1006

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW--RAKNAR 832
              G++VA   ++FI     +       R K +R
Sbjct: 1007 IGGLLVATLITLFITPTFYVAAERLLGREKESR 1039


>gi|299141227|ref|ZP_07034364.1| hydrophobe/amphiphile efflux-1 family protein [Prevotella oris
           C735]
 gi|298577187|gb|EFI49056.1| hydrophobe/amphiphile efflux-1 family protein [Prevotella oris
           C735]
          Length = 1090

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/700 (11%), Positives = 198/700 (28%), Gaps = 60/700 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G +      L    ++++P   P               + +   
Sbjct: 8   KRPVLSTVISIFFVLLGAI-----GLVSLPIEQYPDISPPT-------------ISVMTS 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                   +       L   +   E +   S     +    IT+ F      +  A  V 
Sbjct: 50  YTGADAQTVLNSVITPLEESINGVENMTYMSSTATNSGMAMITVYFKQGSNADMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   + L  +  +  +  +  +  ++++     +         +       + Q+  
Sbjct: 110 NRVQQAQALLPAEVTRAGVTVSKRQSSNVIMYSLTTEDGRYDGQFLTNYNNINIVPQLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P +++Q     + ++      N        G      S
Sbjct: 170 IKGVGDVQTPGTETYSMRIWLQPDKMKQYGLVPSDITGVLAEQNIEAAPGSLGE---SGS 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y +  K  +                 +    +    M            +     +
Sbjct: 227 VAYEYALRYKGRL-------------KSVPEFENIMLKSSMTGETLRLKDVAKVELGALM 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +         + +  A  +     +              P     +E+       
Sbjct: 274 YNMRLINNGQPAVMGMVNQIAGSNATDIAKAVKAALKEASKSFPPGMEYTIEQDTTEFLF 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV  V+++ +   +  L+   ++ + +I T   L + G ++ L  
Sbjct: 334 ASIEEVVITLFITLALVFFVVYIFLQDIRSTLIPLIAVPVALIGTFFFLWVFGFSINLLV 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ ++L I + VD  I+V E +  +  +   S   +     +     I    +      V
Sbjct: 394 LSALLLAIAIVVDDAIVVVEAVHAKLDQGYKSALTASIDAMNEISGAIISITLVMAAVFV 453

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYK 518
            + F GG +    R F +TM LSI+IS   A+++  A+   +                 +
Sbjct: 454 PVSFLGGTSGTFYREFGVTMALSIVISALNALTLSPALCAILLKPHDEEKDETNKNFVSR 513

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
              + +             +        + G+ +++  +   I + FT       +  G 
Sbjct: 514 FHSNFNRIFDKTTNKYKKGVTRIINHKVWAGIAVAVGIAALVITMKFTKTGLVPDEDTGT 573

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + + AN           +E +     S       +  +         S   T V+++ 
Sbjct: 574 LFVMISANPGTSQERTHEIVEEVDKMLASNPAIQRREAIIGYNFIAGQGSDQATFVIKLK 633

Query: 639 KKKITEIVPLSTIQNTEIVGPKIS---RELIRKGIVGVII 675
             +       + I+N    G  ++     L    ++G+I 
Sbjct: 634 PFEERSGGFFTRIKNAISHGDPMALLVNPLESNSVLGMIY 673



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/398 (9%), Positives = 108/398 (27%), Gaps = 21/398 (5%)

Query: 453  DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
            +      Y          ++A       G        +T+       +    ++ +  + 
Sbjct: 666  NSVLGMIYKQTASIKDAQILAFGPPMVPGFSVQNDITMTLQDKTGGDLNKFFNVAQDFLK 725

Query: 513  FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG 572
             + +  ++K         +      + +   +       + +      +  ++    N  
Sbjct: 726  ELNKRPEVKQAMTTYNPNYPQYMVDVDVAKTKQAGISPTVVLSTLQGYLGGMYASNFNAY 785

Query: 573  -------IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK----NFLVRL 621
                   I      +L       + +      +  +       + +        N    +
Sbjct: 786  GKLYRVMIQAAPNDRLRPEQLSNIYVRTASGQMSPVSEFCTLKRVYGPSNIARFNLYTAI 845

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                  +   +    M          +      E  G   S          +++    + 
Sbjct: 846  NVSVTPNTGYSSGQAMQAIAEVSKNTMPQGYGYEYSGLTRSEAESSNA-TAIVLVLCVIF 904

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +Y+ +      +   L  I ++   +     F  LFG   ++    +++ LIG    + +
Sbjct: 905  VYLILSAQYESYVLPLSVILSIPFGLAGAFLFTMLFGHSNDIYMQISLIMLIGLLAKNAI 964

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++     +      T ++ +          L   + TS+A  IS+LP+    G       
Sbjct: 965  LIVQFALE---RRHTGMAIKYSAILGAAARLRPILMTSLAMVISLLPLMFASGVGKNGNQ 1021

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                    G+++     +FI   + +     + K + +
Sbjct: 1022 TLGAAAVGGMLIGTLCQLFIVPALFVAFQWLQEKISPL 1059



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 92/239 (38%), Gaps = 10/239 (4%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V        + ++   N        +  Q    ++    + ++   K+ ++  P     
Sbjct: 263 DVAKVELGALMYNMRLINNGQPAVMGMVNQIAGSNATDIAKAVKAALKEASKSFPPGMEY 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
             E    +     I + ++ + I+   +   ++I        L  +  + + +  T  F 
Sbjct: 323 TIEQDTTEFLFASIEEVVITLFITLALVFFVVYIFLQDIRSTLIPLIAVPVALIGTFFFL 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +FG   NL  ++A+L  I   V+D +VV + +   +     S     +   ++NE  G 
Sbjct: 383 WVFGFSINLLVLSALLLAIAIVVDDAIVVVEAVHAKLDQGYKSALTASI--DAMNEISGA 440

Query: 772 SVYTSMAAFIS--VLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  S+   ++   +P++  GG+       F + MA  IV++A +++ ++  +   +  
Sbjct: 441 II--SITLVMAAVFVPVSFLGGTSGTFYREFGVTMALSIVISALNALTLSPALCAILLK 497


>gi|253565932|ref|ZP_04843386.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           3_2_5]
 gi|251945036|gb|EES85474.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           3_2_5]
          Length = 1068

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/694 (10%), Positives = 180/694 (25%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFTLPVEQYPDIAPPTIM---------VSTSYFGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S        IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSSATNAGTVSITVYFKQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           +  I      +I       
Sbjct: 115 ATGQLPSEVNQVGVTTSKRQTSILQMFSLHSPDDSYDEAFLANYISINLKPEILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        L     P  + Q     + +S      N       FG            
Sbjct: 175 DMMIMG-GDYSLRIWMKPDVMAQYRLIPSDVSTVLAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++                   +    +       +         I           
Sbjct: 234 YKGRRI----------------TPEEFGEIVIRSTDDGQVLKLKDIATIELGQESYAYSG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +               R              +      S   
Sbjct: 278 TTDGHNGVSCMLFQTAGSNATEVNNQINRFLEEARKELPQGVELTQLMSSNDFLYASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLLEAILLVILVVYVFLQDIRSTLIPLVGIIVSLIGTFAFMAIAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 SGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALLLKPYINEDGTQKQNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        I + F++ R+    + I      + L+ T   +   D   G+    +
Sbjct: 518 NAAFDVVVEKYKGIVLFFIKRRWLTGSLLIASIALLVVLMNTTKTSLVPDEDQGVVFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +           ++       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLRTTDDVMKRIEERMEQIPQVKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    +  +    I
Sbjct: 638 PGKEDDVQAVIGQVYGRTADIKDASVFAISPGMI 671



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 87/201 (43%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +    R LE  +K++ + V L+ + ++         E+++  +  +++  + + +++   
Sbjct: 301 NNQINRFLEEARKELPQGVELTQLMSSNDFLYASIHEVVKTLLEAILLVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  +I+ +  T  F A+ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 359 -DIRSTLIPLVGIIVSLIGTFAFMAIAGFSINLITLFALVLVIGTVVDDAIVVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++   G+       F + MA  
Sbjct: 418 FDVGYKSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +   +  
Sbjct: 476 VGISAVNALTLSPALCALLLK 496



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 65/201 (32%), Gaps = 11/201 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            + ++                  G     E  + G   +I     ++IY+    +   +  
Sbjct: 838  DAIRAVQETASTSLPKGYGYDYGGITREENQQSGTTAIIFGICFLMIYLILSALYESFLI 897

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + ++   +  +  F  +FG+E N+     ++ LIG      +++     +      
Sbjct: 898  PFAVLLSVPCGLMGSFLFARMFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERR 953

Query: 753  T-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +        +    L   + T++     +LP+ V    G +   S       G+V+ 
Sbjct: 954  KAGMGLIASALSAAKARLRPILMTALTMIFGLLPLMVASGVGANGNRSLGTGAVGGMVIG 1013

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
              + +FI   + +     + +
Sbjct: 1014 TLALLFIVPSLFIAFQWLQER 1034


>gi|206559466|ref|YP_002230227.1| multidrug resistance protein MdtC [Burkholderia cenocepacia J2315]
 gi|198035504|emb|CAR51382.1| multidrug resistance protein MdtC [Burkholderia cenocepacia J2315]
          Length = 1102

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 158/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    S   +            +   +   Q
Sbjct: 116 RADLPAALKSNPTYRKVNPADSPIMI-VSLTSETSSPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VTVSGSANPAVRVELEPQSLFHYGIGLEDVRAALASANANAP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEFGPQHYQLYTNDQASQASQYRDLVVAYRNGSAVRLSDLSDVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIDTIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGKPRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++  +     +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLPEQHDPQSEGRFGRFLERGFARLQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   +L  +     +  +   Y +  KG     
Sbjct: 515 RGYERSLSWALRRPLLILLTLFATIGLNVYLYVVVPKGFFPQQ 557



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +S + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAVSLVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---SRHIENGKPRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+ + S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLAVSLTVTP 483



 Score = 42.0 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 93/215 (43%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + ++    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQVIYQTMAQVGVPPTIVGSFQGTAQAFQQSMNDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      +      S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTR--NQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGNGDGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G+V++   +++    + L++  +R
Sbjct: 1047 LRAPLGIAIAGGLVMSQVLTLYTTPVVYLYMDRFR 1081


>gi|184201007|ref|YP_001855214.1| protein-export membrane protein SecF [Kocuria rhizophila DC2201]
 gi|183581237|dbj|BAG29708.1| protein-export membrane protein SecF [Kocuria rhizophila DC2201]
          Length = 344

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 133/312 (42%), Gaps = 20/312 (6%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSI-CLLFTHGLNYGIDFKGGIQLGVLANRPV 589
             L     +  F+  R   + +S+   + SI   +   G N GIDF GG +  V      
Sbjct: 10  NDLHSGRRSYPFVHKRGTWLAVSLALVLVSILIPVVKGGFNLGIDFTGGSEFTVSGVSNT 69

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D+++    +        S           V+ Q    D     +        + E     
Sbjct: 70  DVALGERAVAETAGAQESTVTNIAPGTVRVQTQQLDDDQTLALKQKLQDSYAVGED---- 125

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
               +  VGP   + + ++ + G++I     L  + + F+ W  ++ +I  +++ I  T 
Sbjct: 126 -QVTSTFVGPTWGQGVTQQALWGLLIFVALALALMALYFRTWKMSVSSIAAMLVTIVITA 184

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--------ISFRDL 760
           G ++L G E   +AV   LT++ YS+ D VVV+D++R+N                ++ + 
Sbjct: 185 GVYSLVGFEITPSAVIGFLTVLSYSLYDSVVVFDKVRENTAGLLDGTAPGERGKRTYGEQ 244

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           ++ ++N+TL RS+ TS+   + V  +      + G   +   ++ +  GI+V   +++F+
Sbjct: 245 VNLAVNQTLVRSINTSVVGILPVGSILFIGAYLLGAGTLKDLSLSLFVGIIVGTLATLFV 304

Query: 816 AAPILLFIYDWR 827
           AAP+  ++ D  
Sbjct: 305 AAPLYSWLRDRE 316


>gi|157158287|ref|YP_001463427.1| multidrug efflux system subunit MdtB [Escherichia coli E24377A]
 gi|167008954|sp|A7ZNP8|MDTB_ECO24 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|157080317|gb|ABV20025.1| multidrug resistance protein MdtB [Escherichia coli E24377A]
          Length = 1040

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|256421811|ref|YP_003122464.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
 gi|256036719|gb|ACU60263.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
          Length = 1056

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/652 (11%), Positives = 162/652 (24%), Gaps = 52/652 (7%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKK-EGIGV 88
            + +FP   P               + +           +       +   +   E +  
Sbjct: 31  PVTQFPDIAPP-------------SVAVTASYPGANAEVVARSVATPIEEAVNGVENMTY 77

Query: 89  FSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
            +     +    +T+ F      +  A  V   +    S L V+     + T  ++   I
Sbjct: 78  MTSTSNNDGSMTLTVYFKLGTDPDLAAVNVQNRVAKATSLLPVEVVSAGITTQKQQNSMI 137

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++     +                 I +I       Q +        +     P RL   
Sbjct: 138 MVVNLFSEMAEYDEKFLQNYAKINIIPEIQRVTGVGQAMVFGAKDYSMRIWLRPDRLAAN 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +       N       FG       +        + +                 
Sbjct: 198 NLSPQDVLSAIREQNLEAAPGRFGESSKEAFEYVIKYKGKRNQ----------------N 241

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                 +            +             A  + N   
Sbjct: 242 AQYEDIVLKANADGSLLRLKDVARVEFGSFTYSSDTHVNGKYGIGIAIYQTAGSNANEIQ 301

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                L                          S    K T      LV IV+F+ +   +
Sbjct: 302 TQVNELMKKAAGLFPNGVDYFNIYSTKEYLDESIDQVKHTLIEAFILVFIVVFIFLQDFR 361

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ + +I T   + L G T+ L ++  +VL IG+ VD  I+V E +  +    
Sbjct: 362 STLIPAIAVPVAIIGTFFFMQLFGFTINLLTLFALVLAIGIVVDDAIVVVEAVHSKMETI 421

Query: 446 QSVFCSL----DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
                +         S A  +I        I    +    G   R FA T+ ++ILIS  
Sbjct: 422 NMSPRAATITSMQEISGAIISITLVMAAVFIPVGFMQGPAGVFYRQFAFTLAIAILISAL 481

Query: 502 TAISIVRAMMIFIIRYKK--------------MKSIDINPLSRFFLIPDCIAIQFMRARF 547
            A+++  A+   +++                  +           +    I       R 
Sbjct: 482 NALTLSPALCALLLKNNHSNQTHGTAYTKGFGKRFFTAFNSGFEAVTNKYIHSVRFLVRR 541

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
             V ++ L  I  + +        G          V +      S ++   E +   +  
Sbjct: 542 KWVPLTALAIIIGVTVWLVKRTPTGFIPTEDNGFVVYSVTMPPGSSLQRTQEVVNKVEKE 601

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +  +   +FL    +    +   +       K              +++G 
Sbjct: 602 MKALESVNSFLSVSGFNLLTNSNSSASAVGFVKLKKHEERGQMKDLKDVMGM 653



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 78/207 (37%), Gaps = 8/207 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                 +++         V    I +T+    +   ++    I   I+  I + I++   
Sbjct: 301 QTQVNELMKKAAGLFPNGVDYFNIYSTKEYLDESIDQVKHTLIEAFILVFIVVFIFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +   L     + + I  T  F  LFG   NL  + A++  IG  V+D +VV + +   
Sbjct: 359 -DFRSTLIPAIAVPVAIIGTFFFMQLFGFTINLLTLFALVLAIGIVVDDAIVVVEAVHSK 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           M+     +S R     S+ E  G  +  ++      +P+    G        FA  +A  
Sbjct: 418 METIN--MSPRAATITSMQEISGAIISITLVMAAVFIPVGFMQGPAGVFYRQFAFTLAIA 475

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           I+++A +++ ++  +   +      N 
Sbjct: 476 ILISALNALTLSPALCALLLKNNHSNQ 502



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/441 (10%), Positives = 124/441 (28%), Gaps = 21/441 (4%)

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
            +  L +  +  S++G  L       ++ +   ++++   + Q     L        + + 
Sbjct: 602  MKALESVNSFLSVSGFNLLTNSNSSASAVGFVKLKKHEERGQMKD--LKDVMGMMQAKLA 659

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                  +    +    G   V GF + +       +    +     +  +++ K++    
Sbjct: 660  GIKEANIFMFNIPTVPGFSNVDGFEVILQDRNGGPIDKLANTAYGFIGELMKRKEIAFAF 719

Query: 525  INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN----------YGID 574
                +        I     +     +   +          F    N              
Sbjct: 720  TTFNAGNPQYNLEIDEAKAKQLGISLSDILQTMQVYYGSTFASDFNRFGKYYRVIVQAEA 779

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                    +      + +     + ++   +  +      +N L       G        
Sbjct: 780  PARAEPASLNEIFVKNSTGEMVPVNAVVKLERVYGPETVTRNNLFNAVTINGQPKPGYSS 839

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWY 691
             + +K              +         E+   G  G+I     + +Y  +      + 
Sbjct: 840  GDAIKAVEEVAQQYLPRGYSYEWVGMTKEEIAAGGQAGIIFLLCLVFVYFLLAAQYESYI 899

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + ++ L I     F  LFGI+ N+     ++ LIG    + +++ +     ++  
Sbjct: 900  LPLSVLLSIPLGIFGVFVFINLFGIDNNIYVQVGLIMLIGLLAKNAILIVE---YAVQRR 956

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMAFGIVVA 808
               +       ++    L   + TS A    + P+    G S +   S +   A G++  
Sbjct: 957  RNGMGLLAAALEASRLRLRPILMTSFAFVAGLTPLMRATGSSALGNRSISTGAAGGMLTG 1016

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
                IF    + +     + +
Sbjct: 1017 VILGIFAIPVLFIIFQYLQER 1037


>gi|220920985|ref|YP_002496286.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
 gi|219945591|gb|ACL55983.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
          Length = 1047

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/510 (12%), Positives = 143/510 (28%), Gaps = 37/510 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVN 67
           + + +   G+L       P   +   P                   +   L     + + 
Sbjct: 14  VATSLVMAGILFVGIVAYPLLGVAPLPQVDFPT-----------IQVTAQLPGASPETMA 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   + +        +     + +++ F  +R  +  A+ +   +     +L 
Sbjct: 63  SSVAQPLERQFAQIPGLSQMTSTSSLGVSIVSVQFDLNRNIDAAANDIQAAINAAGGQLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            +              S +L  +          E +  I  Q   +I       Q L   
Sbjct: 123 KNLPNPPTYRKVNPADSPILILSASSD-TLPLTEVNDAIDVQLAQRISQISGVAQVLIGG 181

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           +    +  + DP++L     +   +                                   
Sbjct: 182 QQKPAVRIQVDPAKLVAKNLSLEDIRIPL--------------------SITTVNSPKGN 221

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
                      AN      K   ++                                   
Sbjct: 222 FDGATRSFTVYANDQLTEAKDWNNVIVAYRNGAPLRVRDIGQAVAGPEDAKQAAWTNGQR 281

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
               +   +   +   T++        LRA         +          S    + T  
Sbjct: 282 GVFLVIFKQPGANVIDTVDRIKAELPRLRAALPAGIKVDLMSDRTTTIRASVEDVQFTLM 341

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           +  GLV++V+F+ +      ++   ++ L+++   AL+ ++G TL   S+  + + +G  
Sbjct: 342 LTIGLVVMVIFIFLRSLWATVIPSVTVPLSLLGACALMWMMGYTLDNLSLMALTISVGFV 401

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA--- 484
           VD  I+V E I     K      +   G      TI   +++ +   + L   GG     
Sbjct: 402 VDDAIVVLENISRYIEKGMKPREAAFKGAGEIGFTIVSISVSLVAVLIPLLLMGGIIGRL 461

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFI 514
            R FA+T+ ++I +S F ++S+   M    
Sbjct: 462 FREFAVTLSMAIGVSAFVSLSLTPMMASRF 491



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 96/278 (34%), Gaps = 12/278 (4%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                S   +       FT   N  +         ++A R      VR   +++   + +
Sbjct: 212 ITTVNSPKGNFDGATRSFTVYANDQLTEAKDWNNVIVAYRNGAPLRVRDIGQAVAGPEDA 271

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            Q         V L             ++ +K ++  +           +    +  +  
Sbjct: 272 KQAAWTNGQRGVFLVIFKQPGANVIDTVDRIKAELPRLRAALPAGIKVDLMSDRTTTIRA 331

Query: 668 KG-----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
                   + + I  + M+I+I++R   +  +    T+ L +        + G   +  +
Sbjct: 332 SVEDVQFTLMLTIGLVVMVIFIFLR-SLWATVIPSVTVPLSLLGACALMWMMGYTLDNLS 390

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+   +G+ V+D +VV + +    +     +  R+   K   E     V  S++    
Sbjct: 391 LMALTISVGFVVDDAIVVLENI---SRYIEKGMKPREAAFKGAGEIGFTIVSISVSLVAV 447

Query: 783 VLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           ++P+ + GG +      FA+ ++  I V+A  S+ +  
Sbjct: 448 LIPLLLMGGIIGRLFREFAVTLSMAIGVSAFVSLSLTP 485



 Score = 45.8 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 91/261 (34%), Gaps = 18/261 (6%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                  + V +        + +                  +   V + +    +VA  + 
Sbjct: 765  PDTLRNIYVKSPTTGGQVPLAAFASWSTDPVRPLSISHQGQFPAVTISFNLAPNVALGQA 824

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++   E+   +T+        +  ++ +    + ++ + I + + + + ++ +   
Sbjct: 825  TAAIQQASRELNVPATLVGGFQGTAQAFQQSLGTVPLLIVAALIVVYLILGVLYESYIHP 884

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI------GYSVNDKVVVYDRMRKN 747
            L  ++TL       L     FG +F+L  +  ++ LI      G  + D  +V +R    
Sbjct: 885  LTILSTLPSAGVGALAMLLGFGFDFSLIGLIGIILLIGIVKKNGIMMVDFAIVAER---- 940

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                   +S  + I ++        + T+MAA +  LP+      G  +       M  G
Sbjct: 941  ----AEHLSSEEAIRRAALLRFRPILMTTMAALLGGLPLMFGTGTGAEIRQPLGYAMVGG 996

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            + V+   ++F    I +++  
Sbjct: 997  LAVSQVLTLFTTPVIYVYLDR 1017


>gi|332528383|ref|ZP_08404377.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Hylemonella gracilis ATCC 19624]
 gi|332042146|gb|EGI78478.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Hylemonella gracilis ATCC 19624]
          Length = 414

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/435 (11%), Positives = 117/435 (26%), Gaps = 28/435 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G L      L Q  + ++P   P              ++      
Sbjct: 8   RPVFAWVLALVVMLAGALA-----LRQLPVAQYPEVAPPAL---------AINVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++       S  Q    I L+F      E  + +    ++ V
Sbjct: 54  AQVVENTVVSLIEQEMNGIEGLLYMDSSSEQSTGTINLTFQTGTDIEVASVEAQNRIKRV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L  + K+  +  T  +   ++            +++ +       +D+I       +
Sbjct: 114 EARLPDEVKRLGVNVTKTRRNYLMFVMLYSPDGSRSSVDLASYAASNVLDEIRRVPGVGE 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     + + +       N                      
Sbjct: 174 AQLFGS-EYSMRLWVDPDKLASYKLSPSDVIAAVRAQNVLLAVGEVNQPPAPAGMEYAAS 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V  +  +S                +    +   +             +            
Sbjct: 233 VITRGRLS-------------TPKEFGDVVVRAQSDGSLVRVRDVARVELGAQDYSVFAR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +   T +        L           V          S    
Sbjct: 280 IDGKSAAGVGIKVAPGANALDTAKAVRARMEDLGRFLPKGMTWEVPYDTTPFIDVSIQEV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV IV+++ +   +  L+    + ++++     L +LG ++ + ++  +VL
Sbjct: 340 IKTLIEAVVLVFIVMYLFLENWRATLIPTIVVPISLVGAALGLYVLGYSINVLTLFAMVL 399

Query: 423 GIGLAVDSNILVNER 437
            IG+ VD  I+V E 
Sbjct: 400 AIGIVVDDAIVVVEN 414



 Score = 38.9 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 6/156 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V A     L  VR                  +      +  +           + V+ 
Sbjct: 248 VVVRAQSDGSLVRVRDVARVELGAQDYSVFARIDGKSAAGVGIKVAPGANALDTAKAVRA 307

Query: 641 KITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
           ++ ++        T  V    +  +   I++ I  +I + + + I +++  + W   L  
Sbjct: 308 RMEDLGRFLPKGMTWEVPYDTTPFIDVSIQEVIKTLIEAVVLVFIVMYLFLENWRATLIP 367

Query: 697 ITTLILD-ITKTLGFFALFGIEFNLTAVAAVLTLIG 731
              + +  +   LG + L G   N+  + A++  IG
Sbjct: 368 TIVVPISLVGAALGLYVL-GYSINVLTLFAMVLAIG 402


>gi|323977764|gb|EGB72850.1| AcrB/AcrD/AcrF family protein [Escherichia coli TW10509]
          Length = 1040

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 168/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSADEYRQLIIAYQNGAPIRLGDVATVEQGAENNWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|254509407|ref|ZP_05121489.1| RND transporter, HAE1/HME family, permease protein [Vibrio
           parahaemolyticus 16]
 gi|219547661|gb|EED24704.1| RND transporter, HAE1/HME family, permease protein [Vibrio
           parahaemolyticus 16]
          Length = 1024

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 61/644 (9%), Positives = 175/644 (27%), Gaps = 41/644 (6%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L  ++C  G++        +  +   P                      E      +  
Sbjct: 1   MLSLLLCVFGIVS-----FSKLAVREMPDIESPVV---------SISTRYEGASAT-IES 45

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    ++  S +        + R   ++IT++F            V   +      L  
Sbjct: 46  QITSVLEDQLSGISGIDEISSTTRNSMSRITITFDLGYDLNTGVSDVRDAVARAQRSLPD 105

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
           +    ++        + +    +  +      + +  + R  +D+  +         S  
Sbjct: 106 EADDPVVFKNNGSGEASLYINLSSSE--MDRTQLTDYVERVLMDRFSLISGVSSVDISGG 163

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           +   +  +  P ++     TT+ ++      N    G                     V 
Sbjct: 164 LYKVMYVKLKPEQMAGRGVTTSDITSALRSENIESPGGE-------------------VR 204

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
              I ++  TA    +       +          +     ++                V 
Sbjct: 205 NDQIVMSVRTARSYNQAEDFEYLVVKRASDNSPIYLRDVADVYIGAENENSTFKSDGVVN 264

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                  ++  +     +        ++          ++  +      S +    T  I
Sbjct: 265 VSMGIVPQSDANPLEVADRVHTEVENIQQFLPEGTRLAIDYDSTVFIERSIAEVYSTLFI 324

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
             GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++L IGL V
Sbjct: 325 TGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVV 384

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AV 485
           D  I+V E I       +    +   G       +  + +  ++  + + F  G      
Sbjct: 385 DDAIVVVENIFHHIENGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLF 444

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPDCIAIQFM 543
             F++ + +S++ S   A+++   +   +++     +            L      +   
Sbjct: 445 TEFSVLLAMSVIFSSLIALTLTPVLGSKLLKANVKPNRFNLFIDRMFGHLESGYRKVLRS 504

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
              +      ++ +           +   +       +     R  D +       ++ I
Sbjct: 505 ALNWKWAAPLVILACMGGSWGLMQQVPAQLTPSEDRGVIFAFVRGADATSYNRMSANMDI 564

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            +       G+          P            V   + +   
Sbjct: 565 VEERLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 608



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 88/284 (30%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          +R   +     +     F  +  
Sbjct: 203 VRNDQIVMSVRTARSYNQAEDFEYLVVKRASDNSPIYLRDVADVYIGAENENSTFKSDGV 262

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V + V  ++  I           +    +  + R        +
Sbjct: 263 VNVSMGIVPQSDANPLEVADRVHTEVENIQQFLPEGTRLAIDYDSTVFIERSIAEVYSTL 322

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 323 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 381

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     + T++   +  LP++   G
Sbjct: 382 LVVDDAIVVVENI---FHHIENGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 438

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 439 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSKLLKANVKPNR 482



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/138 (15%), Positives = 49/138 (35%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L  + T+ + +        L G   N+ +   ++ LIG    + +++ +      
Sbjct: 858 SFINPLVVMFTVPMGVFGGFLGLFLMGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 914

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
           +L    I F   I  +    L   + T+       +P+ V    G     +    + FG+
Sbjct: 915 QLRDRGIEFEKAILDASARRLRPIMMTAFTTLAGAIPLIVSTGAGYESRVAVGTVIFFGM 974

Query: 806 VVAASSSIFIAAPILLFI 823
             A   ++F+   +   I
Sbjct: 975 AFATLVTLFVIPAMYRLI 992


>gi|218705610|ref|YP_002413129.1| multidrug efflux system subunit MdtB [Escherichia coli UMN026]
 gi|256022233|ref|ZP_05436098.1| multidrug efflux system subunit MdtB [Escherichia sp. 4_1_40B]
 gi|293405550|ref|ZP_06649542.1| multidrug efflux system subunit MdtB [Escherichia coli FVEC1412]
 gi|298381234|ref|ZP_06990833.1| RND superfamily [Escherichia coli FVEC1302]
 gi|331663571|ref|ZP_08364481.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli TA143]
 gi|226700673|sp|B7NCB1|MDTB_ECOLU RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|218432707|emb|CAR13601.1| multidrug efflux system, subunit B [Escherichia coli UMN026]
 gi|291427758|gb|EFF00785.1| multidrug efflux system subunit MdtB [Escherichia coli FVEC1412]
 gi|298278676|gb|EFI20190.1| RND superfamily [Escherichia coli FVEC1302]
 gi|331059370|gb|EGI31347.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli TA143]
          Length = 1040

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 170/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFERIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFT 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|323968210|gb|EGB63619.1| AcrB/AcrD/AcrF family protein [Escherichia coli M863]
 gi|327253208|gb|EGE64862.1| multidrug resistance protein mdtB [Escherichia coli STEC_7v]
          Length = 1040

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 168/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSADEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|312892480|ref|ZP_07751973.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mucilaginibacter paludis DSM 18603]
 gi|311295060|gb|EFQ72236.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mucilaginibacter paludis DSM 18603]
          Length = 1071

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/525 (14%), Positives = 159/525 (30%), Gaps = 38/525 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G+L      L +  L+RFP   P   +            V     
Sbjct: 8   RPVLSTVISILLVIVGIL-----GLTKLPLERFPDIAPPAVL---------VSAVYPGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +        IT+ F      +  A  V   +  
Sbjct: 54  AETILRSVTPSLEEAINGVENMTYMTSTASNDGTLAITVYFKQGTNPDQAAVNVQNRVSQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV-ISHAIEQSMEIIRQRIDQIGISEST 180
            +S+L  +  +  + TT ++   I       +          +       I +I      
Sbjct: 114 ASSQLPAEVLQYGITTTKQQNSFIGAMALYSEDPKKYDQTFVANYAQINIIPEIKRIPGV 173

Query: 181 IQRLGSHRI-LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                   I    +    +P ++     T A++       N       FG    R ++  
Sbjct: 174 GSASIFGGIKDYSMRVWLNPGQMAAHKVTPAEVMAAIQDKNLEAAPGKFGE---RSNEAF 230

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           +Y+++ K +++             K  +                      +         
Sbjct: 231 EYVIKYKGKLT-------------KPEEYQNIAIRANADGSVLHLKDVARVELGAYSYNS 277

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L             +  + N        L                  R       S 
Sbjct: 278 VSNLNGHDGIIIGIIQLSGSNANEIQIAIDKLMEKASKDFPVGIKYNQFYRTKTDLDESI 337

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  + T      LV IV+F+ +   +  L+   ++ + +I T   ++L G ++ L ++  
Sbjct: 338 NQVEHTLVEAFILVFIVVFIFLQDFRSTLIPAIAVPVAIIGTFFFMNLFGFSVNLLTLFA 397

Query: 420 IVLGIGLAVDSNILVNERIREENRK--NQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           +VL IG+ VD  I+V E +  +       S   +           I    +      + +
Sbjct: 398 LVLAIGIVVDDAIVVVEAVHAKMEHNPGLSPKAATTQAMHEITGAIISITLVMAAVFLPV 457

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            F  G      R FA+TM ++I+IS   A+++  A+    ++ K 
Sbjct: 458 SFMTGSTGIFYRQFALTMAIAIIISAVNALTLSPALAALFLKNKH 502



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 93/239 (38%), Gaps = 5/239 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V          +        +   +  +Q    ++      ++ + +K ++  P+    
Sbjct: 264 DVARVELGAYSYNSVSNLNGHDGIIIGIIQLSGSNANEIQIAIDKLMEKASKDFPVGIKY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N          E I +    ++ + I + I ++I    +   L     + + I  T  F 
Sbjct: 324 NQFYRTKTDLDESINQVEHTLVEAFILVFIVVFIFLQDFRSTLIPAIAVPVAIIGTFFFM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   NL  + A++  IG  V+D +VV + +   M  +   +S +    ++++E  G 
Sbjct: 384 NLFGFSVNLLTLFALVLAIGIVVDDAIVVVEAVHAKM-EHNPGLSPKAATTQAMHEITGA 442

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  ++      LP++   GS       FA+ MA  I+++A +++ ++  +       +
Sbjct: 443 IISITLVMAAVFLPVSFMTGSTGIFYRQFALTMAIAIIISAVNALTLSPALAALFLKNK 501



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 66/200 (33%), Gaps = 9/200 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +K           +        +   E+   G   VI     + +Y  +      +  
Sbjct: 843  DAIKAIEETAKEQLPVGFAYEFAGQTREEISSGGQSAVIFMLCLIFVYFLLSAQYESYIL 902

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I ++   +        L GIE N+    A++ LIG    + +++ +     ++   
Sbjct: 903  PLAVILSIPTGLFGVFAVLGLTGIENNIYVQVALIMLIGLLAKNAILIVEFA---VQRRK 959

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAA 809
                      ++    L   + TS+A    + PM++  G         +I  A G+V   
Sbjct: 960  AGQPLVAAAIEAAKLRLRPIIMTSLAFVFGLFPMSIATGPSAQGNHSISIGAAGGMVSGV 1019

Query: 810  SSSIFIAAPILLFIYDWRAK 829
               +FI   + +     + +
Sbjct: 1020 VLGLFIIPVLFVIFQGLQER 1039


>gi|39937738|ref|NP_950014.1| putative efflux transporter [Rhodopseudomonas palustris CGA009]
 gi|39651598|emb|CAE30120.1| putative efflux transporter [Rhodopseudomonas palustris CGA009]
          Length = 1050

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/683 (11%), Positives = 189/683 (27%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    ++   ++  +G +      + +      P                   +     
Sbjct: 11  RHPLPSIVFSIILLALGWISFTKLAVTRLPSADIPVIS--------------VAVSQFGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ FA     +   + V   +  
Sbjct: 57  APAELEAQVTKTIEDGVSGVEGVRHIASSITDGLSVTTIQFALETNTDRALNDVKDAVTR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +  + L+       + IV              + S  +       +       
Sbjct: 117 VRANLPQNINEPLIQRVDVIGLPIVTYAAISPGKTPE--QLSWFVDDVVKRALQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL+    T   +S      N    G    +     +     
Sbjct: 175 QVERIGGVEREILVSLDPDRLKAAGLTALDVSRRLRGTNVDLAGGRAEIGNNDQAIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +++G  ++                                  +   +A      
Sbjct: 235 GARTLNDLAGTMISLNA--------------------GGEVRLDDLGTVTDTIAARHTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S     E        L+A    ++L +++  +V    G+   
Sbjct: 275 RFNGEPVVALGIKRSKGASDVVVAEAVQKRIDTLKAQYPDVELKLIDT-SVDYTKGNYEA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  ++A  S+ L++      + +LG +L L S   I 
Sbjct: 334 AISTLFEGAILAVIVVFLFLRDFRATVIAAISLPLSIFPAFWAMDMLGFSLNLVSFLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A   I  + I        + 
Sbjct: 394 LSTGILVDDAIVEIENIVRHMRMGKSPYQAAIEAADEIGLAVIAISLTIIAIFAPASFMS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ + +  S+  A  +   +  + ++           + R +      
Sbjct: 454 GIAGQFFKQFGITVSVQVFFSLLAARFVTPVLAAYFLKDHPHVEKPPGRVLRAYTRIVTW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV--VRS 596
           ++                SI SI LL    L      +  + + +     +  +     +
Sbjct: 514 SVHHYYITVLIGLGIFAASIWSIVLLPQGFLPAQDTARSVLAMQLPPGTQIGTTEKTTEA 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++ L+        F         +Q     S+      +  +      +  +  +  + 
Sbjct: 574 IVKLLRERPEVKSVFVDGGRVPPGIQEVRRASLIINYTPKHDRSITQRELEHTISRQLDQ 633

Query: 657 VGPKISRELIRKGIVGVIISAIA 679
           V       L   G+  + +    
Sbjct: 634 VPDIRYWFLDENGLRAISLVVTG 656



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + A   V L  + +  +++       +        L   + +    V     ++   
Sbjct: 246 MISLNAGGEVRLDDLGTVTDTIAARHTFARFNGEPVVALGIKRSKGASDVVVAEAVQKRI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P   ++  +                    + +A+++       +   + A  +
Sbjct: 306 DTLKAQYPDVELKLIDTSVDYTKGNYEAAISTLFEGAILAVIVVFLFLRDFRATVIAAIS 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I        + G   NL +  A+    G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSIFPAFWAMDMLGFSLNLVSFLAITLSTGILVDDAIVEIENI---VRHMRMGKSPYQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     +  S+           + G  G     F I ++  +  +  ++ F+ 
Sbjct: 423 AAIEAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARFVT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PVLAAYFLK 491



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL       +    + +   + + F  +   +  + +L L I   +G   L G +    
Sbjct: 839  AELSDGFATAISGGLMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIGALLLTGKQLTTP 898

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
                +L L+G    + +++ +   + M+   +  +    I  +  +     V T++A   
Sbjct: 899  VWIGILMLMGIVTKNAIMLIEFAMEAMREGKSRDA---AIIDAGQKRARPIVMTTIAMVA 955

Query: 782  SVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + P A+    GG      A+ +  G++ +   S+     + + + D
Sbjct: 956  GMTPSALAFGAGGEFRSPMALAVIGGLIFSTVLSLIFVPAVFMMMDD 1002


>gi|262281160|ref|ZP_06058942.1| nodulation protein [Acinetobacter calcoaceticus RUH2202]
 gi|262257391|gb|EEY76127.1| nodulation protein [Acinetobacter calcoaceticus RUH2202]
          Length = 1032

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 58/629 (9%), Positives = 160/629 (25%), Gaps = 48/629 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP+      +                 
Sbjct: 9   KYPVFTIMMMISLMVLGLAS-----WKRMTVEEFPNIDFPFVV---------VTTEYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +  + +   F         A  V   +  
Sbjct: 55  SPEAVESDITKKLEDQINTISGIKQITSRSSEGFSMVVAEFNLDTSSAIAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   +    ++         I+           +  + S  + ++ + Q+       
Sbjct: 115 VAAQFRDEIDTPIVQRYDPSSSPIMSVVFESTS--MNLAQLSSYVDKRIVPQLKTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  +  P +L+       ++       N          +        Q 
Sbjct: 173 NVNLLGDAKRQIRIKILPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                           D+          F      +    A +    
Sbjct: 233 KV--------------------IHPLAFGDLVIANKNGSPIFLKQVATVEDTQAELQSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    ++        L+          V   +      S   
Sbjct: 273 FYNGKTAVSIDILKSSDANVIQVVDKTYQTLEKLKTQMPAGLNYKVVADSSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VARTIIEGAALAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHTELGKDHVTAALEGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G     F +T+  ++LISMF + ++   +                +    I      
Sbjct: 453 GLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKKDNWLQRFFDHISNLLDR 512

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              +    + +         +                         KG I++        
Sbjct: 513 LSHVYERLLKLALRFRFITVIIAIASLFAALGLSKLIGTEFVPTPDKGEIRIQFETPVDA 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            L   ++ L  +      F +       +
Sbjct: 573 SLEYTQAKLHQVDQIIRQFPDVVSTYGVV 601



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/206 (16%), Positives = 76/206 (36%), Gaps = 8/206 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               +  + ++K  T++      +        I   +       +  +A+A+LI +    
Sbjct: 294 QVVDKTYQTLEKLKTQMPAGLNYKVVADSSKGIRASIKDVARTIIEGAALAVLIVLLFLG 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   +    TL + +  TL F   FG   N+  + A+   IG  ++D +VV    R+N+
Sbjct: 354 SFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVV----RENI 409

Query: 749 KLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
             +T           +   E     + T++      LP+A  GG +      F + ++  
Sbjct: 410 VRHTELGKDHVTAALEGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTA 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKN 830
           ++++   S  +   +     D   K 
Sbjct: 470 VLISMFISFTLDPMLSAHWKDPVKKK 495



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 861  ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFQSTLNLFSIIGII 920

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K     +S  D I ++    L   + T+ A  + ++P+A
Sbjct: 921  MLMGLVTKNAILLIDFIK---KAMDQGVSRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 977

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 978  LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 1020


>gi|212704326|ref|ZP_03312454.1| hypothetical protein DESPIG_02381 [Desulfovibrio piger ATCC 29098]
 gi|212672288|gb|EEB32771.1| hypothetical protein DESPIG_02381 [Desulfovibrio piger ATCC 29098]
          Length = 1054

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/679 (10%), Positives = 183/679 (26%), Gaps = 47/679 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +   G             +++ P+      I +  DL G        D
Sbjct: 13  RRPVATALIMLGMLFFGAAS-----YVNLPVNQLPNVDFPT-IQVSADLSG-------AD 59

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +            E  + +             + +IT+ FA  R  +  A  V   +  
Sbjct: 60  PETMAASVATPLEKEFFT-IAGIDSISSVNATGRTRITIQFALDRDIDAAALDVQAAIGL 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +   +            +L    +        E +         ++ + +   
Sbjct: 119 AQRRLPTNMTNDPSFRKVNPADYPILY-LRVGSPTLPLYELNEYADTLVGQRLSMVKGVA 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q +   +    +    DP  L        +++      N+              +     
Sbjct: 178 QVVIYGQKKYAVRVRVDPDALASRGLGIDEVADAVSGANSKLPTGSLEGERRASAIKASG 237

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E+                          ++    GA        + +           
Sbjct: 238 QLENAEA-------------------FRDVVAAYRNGAPVRLSDIGEVVDSVEQDKQLSW 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++    L   L     P     +      +   S + 
Sbjct: 279 ADDGKPCIMLAVERQPGANTVQVVDDIKTLLPGLTRQLPPSVKLEIFYDRSESIRESVAE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV++V+F+ +      ++   ++ ++VI T +++  +G +L   S+  + 
Sbjct: 339 VKFTLVLTVFLVVLVIFLFLRNLPATIIPSLALPMSVISTFSVMLAMGFSLDNLSLMALT 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E I       +    +   G      TI    ++     + + F G
Sbjct: 399 LAVGFVVDDAIVMLENIVRHQEMGKDPLTAAYDGSGEIGFTILSMTVSLAAVFIPVLFMG 458

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------SIDINPL 528
              G     FA+ +  +IL S   ++++   +  + +R+   K           ++    
Sbjct: 459 GIVGRLFYEFAVVIITAILFSGVVSLTLTPMLCAYFLRHSGSKHRVGYEGIYGKLERAFE 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    + +     R   +   +L        +         +  G +     A + 
Sbjct: 519 WLANKYARSLDVVLRHRRTTLIFSLLLLLATGWLGVIVPKGFLPSEDMGFVVATTEAEQG 578

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +    +      L     +  + D   + +  +      S     +      +  +I  +
Sbjct: 579 ISFEGMVKAQHKLDEVLRNNPHVDRFNSVVGIVGSSQSMSNGTLMIHLKPHGERPDIQTV 638

Query: 649 STIQNTEIVGPKISRELIR 667
                 E+      +  +R
Sbjct: 639 VQRLRRELNTSPAMQVFLR 657



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/152 (11%), Positives = 49/152 (32%), Gaps = 6/152 (3%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +     L + +  T       G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 356 LFLRNLPATIIPSLALPMSVISTFSVMLAMGFSLDNLSLMALTLAVGFVVDDAIVMLENI 415

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPM 801
              ++                 E     +  +++     +P+   GG V      FA+ +
Sbjct: 416 ---VRHQEMGKDPLTAAYDGSGEIGFTILSMTVSLAAVFIPVLFMGGIVGRLFYEFAVVI 472

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              I+ +   S+ +   +  +         R+
Sbjct: 473 ITAILFSGVVSLTLTPMLCAYFLRHSGSKHRV 504



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 91/237 (38%), Gaps = 6/237 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  +  G          +   V + Y     VA +  +  V++    ++P S    ++
Sbjct: 791  STVAKMSPGVGPIAVNHDGQFPAVTISYNLRPGVALSEGVAAVERVSLPLLPDSVSAKSQ 850

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                     L   G + ++++ + + + + I ++ +   L  ++ L       L    +F
Sbjct: 851  GTAQAFQDSLKGMGWL-LLLAIVVIYLVLGILYESFIHPLTILSGLPSAGFGALFTLWIF 909

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   +L     V+ L+G    + +++ D   +  + +  S +  D I +  +      + 
Sbjct: 910  GQPLDLYGFVGVIMLLGIVKKNAIMMLDFALE-AQRHDPSRTPLDAITEGCHVRFRPIMM 968

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            T+MAA +  LP+A+    G        + +  G+  +   +++I      ++ D+  
Sbjct: 969  TTMAALMGALPIAIGMGAGAEARRPLGLAVVGGLCFSQLVTLYITPVYYAYMEDFSR 1025


>gi|168699612|ref|ZP_02731889.1| multidrug efflux transporter MexF [Gemmata obscuriglobus UQM 2246]
          Length = 1098

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/599 (12%), Positives = 171/599 (28%), Gaps = 50/599 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  +I   G+L      L Q  + ++P  +P   +                  
Sbjct: 25  RPVFAMVLSVLITLAGVLA-----LTQLPIAQYPEVVPPQVVVT-------------AVY 66

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L +  +  +   +   EG+     +   +   ++T++F      +     V  
Sbjct: 67  PGADARTLSETVAAPIEQQVNGVEGMLYMESQATNDGAMRLTITFRQGTDPDMAQVLVQN 126

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-------HAIEQSMEIIRQR 170
            +     +L  + ++  +VT  +    +++      +            +  S       
Sbjct: 127 RVNVALPQLPEEVRRLGVVTKKQSTAILLVVNLVSTKEARTDDEVFQQQLAVSRHANNAV 186

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
            D++                  +    DP ++  +    +++       N        G 
Sbjct: 187 KDELARLNGVGDVAMFGNRDYAMRVWLDPDKMTDVNLVPSEVVDAIRKQNVQVAAGQIGQ 246

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
             +      Q +V     +                    + +   E G           +
Sbjct: 247 PPVPKGQARQLVVNTLGRLKTEAQFKD------------IVVKSGEAGEALVRLGDVARV 294

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR--AGSLPIKLNIVE 348
                       L                +   T          LR  A         + 
Sbjct: 295 ELGAKSYDSSSALDNKPSVGLPVFQLPGGNAFNTARDVKAKMKALRASADWPDGIDYQIV 354

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                    S      T      LV +V+ + +   +  L+   ++ ++++ TLA++ +L
Sbjct: 355 YDPTEFVEESVREVVKTLFEAILLVFVVVLLFLQNWRAALIPMIAVPVSLVGTLAVMFVL 414

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN- 467
           G ++   ++ G+VL IG+ VD  I+V E +     +  +   +     S     I   + 
Sbjct: 415 GYSINNLTLFGMVLAIGIVVDDAIVVVEAVEFHIARGLAPLDATRKAMSEVSMAIVGVSL 474

Query: 468 --ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--- 522
                 I   V+    G   + FA+T+ +S LIS F ++++  A+   ++R         
Sbjct: 475 VLCAVFIPAAVIPGLTGQFFKQFAVTIAVSTLISAFNSLTLSPALCPILLRDHHAGKDLI 534

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                    + +       F R               ++ +L  +     +  +G   +
Sbjct: 535 DKALHYLFGWWLFRGFNWTFDRGTKLYGTAVSWLIRLTVVVLLVYAGLLAVAGRGFSMV 593



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 18/165 (10%), Positives = 63/165 (38%), Gaps = 7/165 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               ++   +S +   + +   ++ W   L  +  + + +   +    +  ++ N+ +   
Sbjct: 920  DTTLLVFGLSVVIAFLVLAALYESWLLPLAIVLIVPMCLLCAVIGLIVTHLDLNVFSQIG 979

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G +  + +++ +  +   +     +   +   ++  + L   + TS A  + V+P
Sbjct: 980  LVVLVGLATKNAILIVEYAK---QKREAGMPRFEAAVEAATQRLRPILMTSFAFILGVVP 1036

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + +    G  +  +    +  G++      IF        I  +R
Sbjct: 1037 LLIGEGAGSEMRKALGTVVFSGMLGVTVFGIFFTPVFYAVIERFR 1081



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 81/240 (33%), Gaps = 9/240 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       + +   + +S    D                 +     V             
Sbjct: 286 VRLGDVARVELGAKSYDSSSALDNKPSVGLPVFQLPGGNAFNTARDVKAKMKALRASADW 345

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            + +    + +      +  RE+++     +++  + +L        W  AL  +  + +
Sbjct: 346 PDGIDYQIVYDPTEFVEESVREVVKTLFEAILLVFVVVL---LFLQNWRAALIPMIAVPV 402

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  TL    + G   N   +  ++  IG  V+D +VV + +          ++  D   
Sbjct: 403 SLVGTLAVMFVLGYSINNLTLFGMVLAIGIVVDDAIVVVEAV---EFHIARGLAPLDATR 459

Query: 763 KSINETLGRSVYTSM---AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K+++E     V  S+   A FI    +    G     FA+ +A   +++A +S+ ++  +
Sbjct: 460 KAMSEVSMAIVGVSLVLCAVFIPAAVIPGLTGQFFKQFAVTIAVSTLISAFNSLTLSPAL 519


>gi|187736521|ref|YP_001878633.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187426573|gb|ACD05852.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 1071

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/529 (12%), Positives = 159/529 (30%), Gaps = 40/529 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++    +++  ++     ++     L    ++++P+ +P               + ++  
Sbjct: 7   KHPTIAIVISIVM-----ILLGGLSLMGLPIEQYPNIVPPT-------------IKMQAT 48

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNKI---TLSFADSRFKENIADKVT 116
                   +    +  +   +    G+   +     N I   ++ F              
Sbjct: 49  YPGANAETVANSVASPIEQSISGVVGMDYMTSTNANNGICSLSIVFEVGTDPNMDQTLAY 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           +      +++  +  +  +  T      + +          +AI  S       +D +  
Sbjct: 109 MRYGQATAQIPAEVSQMGITITQSTGSPLAVINLYSPDDSLNAIFLSNYAYVSLVDPVKR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    D +++     +  ++       N    G   G       
Sbjct: 169 VPGVGDVQVFGAGRYAMRIWLDTTKMAAQNISVGEVQSAIQAQNTVIPGGQIGAEPAPPG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y ++ K  +              +T +   +I     G +  +      +      
Sbjct: 229 TEFTYSIQTKGRL--------------QTAEEFGNIIIRADGNKLLYLKDIAKVELGSQT 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +   T++    L               +      A  
Sbjct: 275 YNVSSKYNGRDSGAIAVYAAPGSNAINTVDALVKLFEDRSRSFPAGMEYNLTLDTTLAVR 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    + T      LV++V+F+ +   +  L+   ++ +++I T AL  LLG TL    
Sbjct: 335 ASIEEIEHTLLEALLLVVLVVFVFLQGWRATLIPAIAVPVSIIATFALFPLLGFTLNTIC 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS---TIFDSNITALIA 473
           + G+VL IGL VD  I+V E +     +  +   +              I        + 
Sbjct: 395 LMGMVLAIGLVVDDAIVVVEAVESHMERGLTPRQAAFAAMEEVSGPVIAIALVLAAVFLP 454

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +++L    G   + FA+T+ +S+LIS F A+++  A+   +++ K    
Sbjct: 455 SLLLPGITGTLFQQFAVTIAISMLISAFNALTLSPALSAILLKPKDPTK 503



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 56/139 (40%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + I  T   F L G   N   +  ++  IG  V+D +VV + +     
Sbjct: 362 WRATLIPAIAVPVSIIATFALFPLLGFTLNTICLMGMVLAIGLVVDDAIVVVEAV---ES 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                ++ R     ++ E  G  +  ++      LP  +     G++   FA+ +A  ++
Sbjct: 419 HMERGLTPRQAAFAAMEEVSGPVIAIALVLAAVFLPSLLLPGITGTLFQQFAVTIAISML 478

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +++ ++  +   +  
Sbjct: 479 ISAFNALTLSPALSAILLK 497



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 86/254 (33%), Gaps = 11/254 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS +    +      +  QN       +V       +S A   + +  +  + 
Sbjct: 797  NTGSSVPLSTLVKITDIKGPEFLLRQNLYNSSKLMVTPAQGYSNSQAMEALEKTFEASMP 856

Query: 644  -EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             ++       + +    +    +++   + ++ S    LI   +  +W   L    T+ +
Sbjct: 857  SDMGYSYADMSYQEQKIQNGIGIVQ---IFLLSSVFVFLILAALYERWSLPLSIFMTVPI 913

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                       FG E NL A   ++ LIG +  + +++ +     +       +  +   
Sbjct: 914  AALGAFLGLYWFGYELNLYAQIGLVMLIGLAAKNAILIVEFA---VIEMERGKTLMEATL 970

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA-P 818
             +    L   + TS A  +  +P+A+    G        I +  G+ +A    IF+    
Sbjct: 971  SAARIRLRPILMTSFAFILGCVPLALASGSGAYSRNIIGIVVIAGMTMATVVGIFLIPCS 1030

Query: 819  ILLFIYDWRAKNAR 832
                +  +R + AR
Sbjct: 1031 FYFIMKLFRVRIAR 1044


>gi|161525276|ref|YP_001580288.1| acriflavin resistance protein [Burkholderia multivorans ATCC 17616]
 gi|189349986|ref|YP_001945614.1| RND superfamily multidrug transport protein [Burkholderia
           multivorans ATCC 17616]
 gi|160342705|gb|ABX15791.1| acriflavin resistance protein [Burkholderia multivorans ATCC 17616]
 gi|189334008|dbj|BAG43078.1| RND superfamily multidrug transport protein [Burkholderia
           multivorans ATCC 17616]
          Length = 1102

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 156/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGLFAFVKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVTEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +                +   +   Q
Sbjct: 116 RADLPAALKSNPTYRKVNPADSPIMI-VSLTSDTASPARLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VTVSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                 +   +  + +  +
Sbjct: 217 --KGAIEFGPQHYQLYTNDQASQASQYRDLVVAYRNGAGVRLSDLSEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIDTIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++  +     +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLPERHEAREEGRFARFLERCFARMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   +L  +     +  +   Y I  KG     
Sbjct: 515 RGYERSLSWALSRPLLILLILFATIGLNVYLYVIVPKGFFPQQ 557



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +S + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAVSLVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---ARHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+ + S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLAVSLTVTP 483



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 93/215 (43%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + +I    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      + +    S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRNH--GKSSFDAIREACLLRFRPIMMTTMAALLGALPLAFGSADGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++++   +++    + L++   R
Sbjct: 1047 LRAPLGIAIAGGLIMSQVLTLYTTPVVYLYMDRLR 1081


>gi|300947802|ref|ZP_07161958.1| putative ATP synthase F0, A subunit [Escherichia coli MS 116-1]
 gi|300452622|gb|EFK16242.1| putative ATP synthase F0, A subunit [Escherichia coli MS 116-1]
          Length = 1040

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPISALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|113869651|ref|YP_728140.1| cation/multidrug efflux pump [Ralstonia eutropha H16]
 gi|113528427|emb|CAJ94772.1| Cation/multidrug efflux pump [Ralstonia eutropha H16]
          Length = 1065

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 69/516 (13%), Positives = 151/516 (29%), Gaps = 37/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   +   G++       P   +   PS                    L   
Sbjct: 9   RRPVMTVLLCLAVVVAGIV-----LYPTIPIAALPSFNSPVIQ---------VTATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +    +         + IT+ F + R  ++ A  V   L  
Sbjct: 55  SPETMAASVATQLEKQFATIPGVTVISSQNTLGNSSITIEFNNDRNIDDAAVDVQAALFR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L ++              + VL    I+       + +          +       
Sbjct: 115 AQRSLPIEMTVPPSYRKVNPADAPVLL-LAINSPAMSLADLNAFGDNLISPTLATLPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +     P  L     T  +++      N +            DS     
Sbjct: 174 QVQIFGQKRFAVRVRAHPDALAARGLTLDELATALNRANANTPVGTL------DSARQTL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +++                     I   +             +   +  +  G 
Sbjct: 228 TIQANRQLTSAD-------------AFRNIIVASQPSGALVRLSDVAEVEDSVETIKTGS 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        L           V      +   S   
Sbjct: 275 WLNNERSIVLAVLRQPDANTVAVVDAINAALPRLIQQMPGSVNVSVVNDRSRSIRESIHD 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A+   LV++V+F+ +      L+   S+ +++I T+AL+   G +L   S+  I 
Sbjct: 335 VQFTLALTVALVVMVIFLFLRRAAATLIPTVSLPISLIGTVALMKAFGYSLDNVSLLAIT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  +   +  +G      TI   +I+ +   + +FF  
Sbjct: 395 LAVGLVVDDAIVMLENIVRHIEEGVAPLKAALVGSREMGFTILSISISLVAVFIPIFFMP 454

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G        FA  + L+IL+S   +++++  +    
Sbjct: 455 GVIGLLFHEFAAVVSLAILVSALVSLTLIPMLCARF 490



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 85/252 (33%), Gaps = 12/252 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + V +     L  +    E     +             + L            V+
Sbjct: 239 DAFRNIIVASQPSGALVRLSDVAEVEDSVETIKTGSWLNNERSIVLAVLRQPDANTVAVV 298

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKW 690
           + +   +  ++          V    SR +          + + ++ + M+I++++R + 
Sbjct: 299 DAINAALPRLIQQMPGSVNVSVVNDRSRSIRESIHDVQFTLALTVALVVMVIFLFLR-RA 357

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    +L + +  T+     FG   +  ++ A+   +G  V+D +V+ + +   ++ 
Sbjct: 358 AATLIPTVSLPISLIGTVALMKAFGYSLDNVSLLAITLAVGLVVDDAIVMLENI---VRH 414

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               ++          E     +  S++     +P+    G +      FA  ++  I+V
Sbjct: 415 IEEGVAPLKAALVGSREMGFTILSISISLVAVFIPIFFMPGVIGLLFHEFAAVVSLAILV 474

Query: 808 AASSSIFIAAPI 819
           +A  S+ +   +
Sbjct: 475 SALVSLTLIPML 486



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 84/252 (33%), Gaps = 12/252 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +     + V +S   +    +    ++ Q           L        A  R+    ++
Sbjct: 795  VRSKTGQMVPVSAFATTERRVGPISVNHQGQLPSVTVSFNLAPGAALGDASARIDRYRQE 854

Query: 641  KITEIVPLSTIQNTEIVGPKIS--RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
                    ++      V       + ++    + VI + + +L        +   L  + 
Sbjct: 855  IAMPSSIFTSWGGDAAVFQSSQATQIVLLVAAIAVIYTLLGVL-----YESYIHPLTILA 909

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             L       L    +F +E +L AV  VL LIG    + +++ D            ++  
Sbjct: 910  GLPSAAVGALLTLFIFNVELSLIAVIGVLMLIGIVKKNAIMMID--FALAAQREQGMTPA 967

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFI 815
              I ++        + T+ AA +  LP+A+    G  +     + +  G++ +   ++FI
Sbjct: 968  KAIRQACLLRFRPIMMTTFAAVMGALPLALGLGAGAELRQPLGLAVVGGLLFSQVITLFI 1027

Query: 816  AAPILLFIYDWR 827
               I L +  + 
Sbjct: 1028 TPVIYLALDRFS 1039


>gi|220926661|ref|YP_002501963.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Methylobacterium nodulans ORS 2060]
 gi|219951268|gb|ACL61660.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium nodulans ORS 2060]
          Length = 1062

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/684 (12%), Positives = 183/684 (26%), Gaps = 39/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  +    G L  L        + ++P  +P          +           
Sbjct: 9   RPRLAVVIAIVTAIAGALALL-----SIPVAQYPDIVPP---------QVSVTTTYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +     + K            +  +T SF      +  A  V   +Q 
Sbjct: 55  ADVVESTVAQPIESQVVGVDKMIYMKSVSGNDGSYTLTGSFELGTDPDINAVNVNNRVQI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +KL  D +K  +    +    + +      + I   +  S  +    +D+I  +    
Sbjct: 115 ALAKLPEDVRKQGVTVKKKSSALLGVLAVYSPKAIQDPLFISNYVTINLLDRIKSTPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +       +L  L  TT  +       N        G R + D    Q 
Sbjct: 175 DATLWGPQDYAMRAWVRTDQLTGLNLTTGDVINAIKAQNVQAPVGRIGARPISDEQQLQL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  ++                +    +                 I    A +    
Sbjct: 235 SIQTQGRLT-------------SPEQFQNIVLRTNPDGSLLRLGDVARIELGAASLDRET 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T++        L           V          +   
Sbjct: 282 RLNGSPATVIAIYQSPGANAIATLKEVKARVGELAKAFPEGLEWKVTYDPTAFITETVHE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+IV+F+ +   +  L+   ++ +++I T   L  +G +    S+  +V
Sbjct: 342 VQKTLVEAFVLVVIVVFLFLGSLRATLIPTLAVPVSLIGTFIALKAVGYSANSVSLLAMV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     ++       +     +   + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEHPDLTPREATKRAMAEITAPIIAITLVLLSVFVPVAF 461

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R FA+ + +S+ +S   A+++  A+   ++R        I  L    +   
Sbjct: 462 VPGISGELFRQFAVAVAVSMFLSAINALTLSPALCGVLLRPHHGPRRGIMGLVMRGIDKV 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI------DFKGGIQLGVLANRPVD 590
                   AR   + +  L    +                   D +G   + V       
Sbjct: 522 RDGYGAAVARIVRLSVIGLVLALAAAWGTVELSKITPTGFLPEDDQGAFFVVVQLPEGAA 581

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +      +   +             + +               ++  +K           
Sbjct: 582 VGRTSEVVGRAEALLREEHAVADYTSVIGLNFIDNYSQSNAAFMVVTLKPFEERKGAGDG 641

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
                    +  RE+    +V + 
Sbjct: 642 AAAMIARLGQRFREIQGGMVVPLA 665



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 70/184 (38%), Gaps = 9/184 (4%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                   +E   +G   +I++   +  ++++      W   +  + ++ + I        
Sbjct: 856  EWTDTAFQEKRAEGKTAIILAFAVLFAFLFLVGLYESWTIPVPVLLSVTVGIVGAYAAMV 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
               +  +L A   ++ LIG +  + +++ +  ++        +  R+   +         
Sbjct: 916  WGKLTLDLYAQIGMVVLIGLAAKNGILIVEFAKEQR---EKGVGLREAATEGARLRFRPV 972

Query: 773  VYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + TS A  + +LP+ V  G+          P+  G++ A+   IF+  P+ +     R +
Sbjct: 973  MMTSFAFILGLLPLVVATGASQLARRDVGTPVFGGMIAASFLGIFVIPPLYVVFQGLRER 1032

Query: 830  NARI 833
              R+
Sbjct: 1033 AWRL 1036



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
                L     + + +  T       G   N  ++ A++  IG  V+D +VV    +R+ 
Sbjct: 363 SLRATLIPTLAVPVSLIGTFIALKAVGYSANSVSLLAMVLAIGIVVDDAIVVVENVERVM 422

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +        ++ R+   +++ E     +  ++      +P+A      G +   FA+ +A
Sbjct: 423 EE----HPDLTPREATKRAMAEITAPIIAITLVLLSVFVPVAFVPGISGELFRQFAVAVA 478

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++A +++ ++  +
Sbjct: 479 VSMFLSAINALTLSPAL 495


>gi|172060133|ref|YP_001807785.1| acriflavin resistance protein [Burkholderia ambifaria MC40-6]
 gi|171992650|gb|ACB63569.1| acriflavin resistance protein [Burkholderia ambifaria MC40-6]
          Length = 1102

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/583 (12%), Positives = 157/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    S   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMI-VSLTSETSSPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSVSGSANPAVRVELEPHALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                 +   +  + +  +
Sbjct: 217 --KGAIEFGPKHYQLYTNDQASHASQYSDLVVAYRNGAAVRLSDLSEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIETIDRVRTALPQLTASLPADITVTPVLDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAISLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENITRHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R       +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLREPHDAHEEGRLGRFLERFFARMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   +L  +     +  +   Y I  KG     
Sbjct: 515 RGYERSLSWALRRPLLVLLILFATIGLNVYLYIIVPKGFFPQQ 557



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + IS + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAISLVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---TRHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+ + S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLAVSLTVTP 483



 Score = 44.3 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 91/215 (42%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  + + + + +I    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQAIYQTMAQIGVPPTIVGSFQGTAQAFQQSLNNQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      +      S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRNGNK--SSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGHGDGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++++   +++    + L++   R
Sbjct: 1047 LRAPLGIAIAGGLIMSQVLTLYTTPVVYLYMDRLR 1081


>gi|163793729|ref|ZP_02187703.1| cation/multidrug efflux pump protein [alpha proteobacterium BAL199]
 gi|159180840|gb|EDP65357.1| cation/multidrug efflux pump protein [alpha proteobacterium BAL199]
          Length = 1025

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/523 (12%), Positives = 145/523 (27%), Gaps = 39/523 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  ++  +G++        +  +  +P+                        
Sbjct: 9   RRPVFSTVVSLLVLLVGIVS-----FFRLTVREYPNIDQPVV---------SVATNYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + ++   I     R   ++IT+ F  S   +  A  V   +  
Sbjct: 55  SAQIIESQVTQILEASIAGIEGIEILESVSRPETSRITVRFLLSADSDVAASDVRDRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  +  + ++        SI+      D      IE S    R   D++       
Sbjct: 115 VRGRLPDEVDEPVIAKVEADAQSIIFIAFTSD--RHSPIEISDYADRYIRDRLQNLPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D +R+     T   +       N               +  ++ 
Sbjct: 173 EVRIFGERRYAMRIWVDRTRMAAYDLTVQDIESALRQQNVEVPSGRIESLDREFTVLSRT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +    I   +             +           
Sbjct: 233 GLTTP--------------------EQFRRIVVKDASGFAVRIGDLARVEIGPEDERRTT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +          +   ++          V          S   
Sbjct: 273 RYKGDNAVILGIVKQAVANPLDVSVALREVMPDIQHDLPAGMNAEVAYDKSIFIDRSIEA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV++V+F  +   +  L+   +I +++I   A +  LG ++   ++  +V
Sbjct: 333 VFMTIAEAVVLVVLVIFFFLHNVRATLIPLVTIPVSLIGACAFMYALGFSINTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD  I+V E I          F +  +G       +    +T       + F  
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIENGMKPFRAAIVGIGEISGAVVAMTLTLAAVYAPVAFSP 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G     FA+T+  ++L+S   A+++   M   ++R     
Sbjct: 453 GRTGKLFTEFALTLAAAVLVSGMVALTLSPMMCSKLMRDHGKP 495



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 63/162 (38%), Gaps = 13/162 (8%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I++   + + +  +F+ +      + T+ L +   LG   L G   N+ +   ++TLIG 
Sbjct: 853  ILALGFIYLVLSAQFESFVDPFIIMLTVPLSMAGALGAMHLTGGTLNIYSQIGLITLIGL 912

Query: 733  SVNDKVVVY---DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
                 +++    +R+R +        S RD + ++    L   + T+ A     +P+A+ 
Sbjct: 913  ITKHGILIVQFANRLRDD------GKSVRDAVVEAATLRLRPILMTTGAMVGGAVPLALA 966

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               G     +    +  G+      ++F+       +   R 
Sbjct: 967  HGAGAESRQAIGWVIVGGMTFGTVLTLFVVPTAYTLLSRSRE 1008



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  + T+ + +     F    G   N   + A++  IG  V+D +VV + +    +
Sbjct: 355 VRATLIPLVTIPVSLIGACAFMYALGFSINTLTLLAMVLAIGLVVDDAIVVLENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                +         I E  G  V  ++       P+A   G        FA+ +A  ++
Sbjct: 412 HIENGMKPFRAAIVGIGEISGAVVAMTLTLAAVYAPVAFSPGRTGKLFTEFALTLAAAVL 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           V+   ++ ++  +   +     K   I
Sbjct: 472 VSGMVALTLSPMMCSKLMRDHGKPGPI 498


>gi|21244573|ref|NP_644155.1| acriflavin resistance protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21110250|gb|AAM38691.1| acriflavin resistance protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 1096

 Score =  159 bits (400), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 60/564 (10%), Positives = 160/564 (28%), Gaps = 40/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +  +G+L        Q  +   P     + +                 
Sbjct: 23  RRPIATSLLMAGVLLLGIL-----GYRQLPVSALPEIDAPSLV---------VTTQYPGA 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R  +  +  V   ++ 
Sbjct: 69  NATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMERDIDIASQDVQAAIRQ 128

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 129 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDSLPLREVNRYADAILAQRLSQVPGVG 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 186 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  +                      +        R        N+   +       
Sbjct: 246 QLTDAAQ--------------------YRETIISYKDGRPVRLADVANVVDGVENDQLAA 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   LR+         V          S   
Sbjct: 286 WADGKQAVLLEIRRQPGANIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHE 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T  +++  G +L   S+  +V
Sbjct: 346 VKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALV 405

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 406 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMP 465

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ISM  ++++   M  ++++   +   +             +
Sbjct: 466 GVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERASAAGKTNL 525

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
             + + A    +   +     ++ 
Sbjct: 526 WTRTVGAYERSLDWVLAHQPLTLA 549



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 92/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++ +      +      +   +        +    V L+ +     
Sbjct: 244 NDQLTDAAQYRETIISYKDGRPVRLADVANVVDGVENDQLAAWADGKQAVLLEIRRQPGA 303

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I+ +  +I++
Sbjct: 304 NIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHEVKFTLVLTIALVVAVIFV 363

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   +     + L +  T G  A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 364 FLRRLW-ATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI 422

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S  +  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 423 ---VRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVL 479

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 480 SIAVVISMLVSLTLTP 495



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 89/234 (38%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L   ++ +        ++   V + +      + ++ +  ++K   E+   + +    
Sbjct: 837  AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKAREELKIPTQVHAQF 896

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +             +  ++ S + + I + + ++ +   L  I+TL       L    + 
Sbjct: 897  VGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMC 956

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D     +       +  D I ++        + 
Sbjct: 957  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGATAHDAIRRACLLRFRPIMM 1013

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA +  LP+A+    G  +     I +  G++++   +++    I L++  
Sbjct: 1014 TTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1067


>gi|295689162|ref|YP_003592855.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
 gi|295431065|gb|ADG10237.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
          Length = 1029

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/516 (13%), Positives = 170/516 (32%), Gaps = 40/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++    ++L+ ++   G++        +  + +FP                     LE  
Sbjct: 9   KHPVPAILLFILLTVFGVI-----GFQRLDIQQFPDMDQPTVT---------ISASLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + L+K      ++ +    I++SF   +       +V   + G
Sbjct: 55  APEQLETEVARKIEDKLTSLRKLDHITTTITEGSVSISVSFTIDKDSNEAVQEVRNAVDG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   +   T    S++      D++     E S  +       +   +   
Sbjct: 115 AKSELPAALQTPTVSKVTASSGSMLTYTITSDRMGEE--ELSWFVDNDVAKAVQSVKGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++  + DP+ +  L  + + +S       +   G    +   R S     
Sbjct: 173 TVSRIGGVSREVQVDLDPALMSGLGVSASDVSAKLREMQSDSSGGQGQIGGQRQSLRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  +++ I +  A            +  +  +  +R F +                 
Sbjct: 233 AVHNPSDLAAIAIPAANGQMVRLDQIAKIRDTHSDRSSRAFRDGKE-------------- 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A    ++   G+  +           A   P          +   + +   
Sbjct: 279 -------TIAFTVSRSLGFGDAAVAKKVRAQVEAFAAQHPQVRIEEASNTITPIIENYKG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+++ +   +  LV+  ++ L++I T  ++ L G TL + ++  I 
Sbjct: 332 SMHLVVEGAILAVIVVWLFLRDWRATLVSATALPLSIIPTFGVIYLCGFTLNMVTLLSIA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I    R  +  + +           +  + +T +   +   F G
Sbjct: 392 LVIGILVDDAIVEVENIERHLRMGKKPYQAAMEAADEIGLAVVATTLTLVAVFLPTAFMG 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F IT  +++L+S+  A  +   M  ++
Sbjct: 452 GIPGKIFRQFGITASVAVLMSLLVARLLTPMMAAYM 487



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 82/249 (32%), Gaps = 6/249 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V L  +    ++             E       +       A  + +    +      
Sbjct: 251 QMVRLDQIAKIRDTHSDRSSRAFRDGKETIAFTVSRSLGFGDAAVAKKVRAQVEAFAAQH 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P   I+        I         + V  + +A+++       W   L + T L L I  
Sbjct: 311 PQVRIEEASNTITPIIENYKGSMHLVVEGAILAVIVVWLFLRDWRATLVSATALPLSIIP 370

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G   L G   N+  + ++  +IG  V+D +V  + + +++++            ++ +
Sbjct: 371 TFGVIYLCGFTLNMVTLLSIALVIGILVDDAIVEVENIERHLRMGKK---PYQAAMEAAD 427

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     V T++      LP A  GG        F I  +  ++++   +  +   +  ++
Sbjct: 428 EIGLAVVATTLTLVAVFLPTAFMGGIPGKIFRQFGITASVAVLMSLLVARLLTPMMAAYM 487

Query: 824 YDWRAKNAR 832
                +  R
Sbjct: 488 LRASDREER 496



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 74/213 (34%), Gaps = 7/213 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           ++L  L +G  + Q    ++   V L  +         + E  +    + +P       +
Sbjct: 774 ASLGDLNLGSGASQIDRIDRARQVTLTTELNGRPLGEVMREAKQLPTLQSLPTGVRTVEQ 833

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
               + S  +   G+  + +    +   + + F  +      ++ L L +   L    + 
Sbjct: 834 GELQQTSEMMSSFGL-AMAVGIFCIYAVLVLLFHDFLQPATILSALPLSLGGALFALLIC 892

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            + F++ AV  +L L+G    + +++ +     M      +S  + +  + ++     + 
Sbjct: 893 NMSFSMPAVIGLLMLMGIVTKNSILLVE--YAIMARRQRGLSRVEALLDACHKRARPILM 950

Query: 775 TSMAA---FISVLPMAVWGGSVIGSFAIPMAFG 804
           T++A     +          S     A+ +  G
Sbjct: 951 TTIAMGAGMLPTAAGFGADPSFRQPMAVVVIGG 983


>gi|332092358|gb|EGI97432.1| multidrug resistance protein mdtB [Shigella dysenteriae 155-74]
          Length = 1023

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 2   RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 47

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 48  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 107

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 108 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 166

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 167 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 206

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 207 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 266

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 267 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 326

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 327 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 386

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 387 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 446

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 447 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 506

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 507 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 566

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 567 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 618



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 330 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 388

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 389 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 445

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 446 DIVGRLFREFAITLAVAILISAVVSLTLTP 475


>gi|324114502|gb|EGC08471.1| AcrB/AcrD/AcrF family protein [Escherichia fergusonii B253]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSADEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|293415363|ref|ZP_06658006.1| multidrug efflux system subunit MdtB [Escherichia coli B185]
 gi|291433011|gb|EFF05990.1| multidrug efflux system subunit MdtB [Escherichia coli B185]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/652 (10%), Positives = 172/652 (26%), Gaps = 42/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMRAR----FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                         + +S+  S   + +L    +  G        +     +    S   
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           +  +  +            ++    +     +    +  L++  K + E   
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKLLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|225851825|ref|YP_002732058.1| acriflavin resistance protein [Brucella melitensis ATCC 23457]
 gi|256264661|ref|ZP_05467193.1| acriflavin resistance protein [Brucella melitensis bv. 2 str. 63/9]
 gi|225640190|gb|ACO00104.1| acriflavin resistance protein [Brucella melitensis ATCC 23457]
 gi|263095029|gb|EEZ18737.1| acriflavin resistance protein [Brucella melitensis bv. 2 str. 63/9]
          Length = 1043

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 157/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDCENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+   +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPAALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 72/220 (32%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++   +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPAALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   +      +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFREFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 69/164 (42%), Gaps = 7/164 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G     +    +  G+ +A  +++++     L +  +    
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTKPK 1021


>gi|209543115|ref|YP_002275344.1| acriflavin resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209530792|gb|ACI50729.1| acriflavin resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 1021

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 87/732 (11%), Positives = 207/732 (28%), Gaps = 44/732 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  +I   G+              ++P+      +                
Sbjct: 8   LRRPVLAIVVTILIILFGI-----KGFNSIATRQYPTLETSTIL---------ISTRYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D + GF+     E  + ++       +  Q  + +T+    +         V   + 
Sbjct: 54  ASSDLMQGFVTQPISEAVASVEGIDYLSSTTTQGLSVVTVRMMLNYDSMRALTDVMSKVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L       ++  T+    ++               E S  I R     +   E  
Sbjct: 114 AVKYRLPEGAYDPVIKRTSGGFTAVAYIGFAST--TRPLYEISDYIHRVAAPMLSGIEGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +        + +    DP +L     T   ++      N           +   +    
Sbjct: 172 SEISYFGEQRLSMRLWLDPEKLAANDMTGEDVAQAIRENNFQAAPGRIRGVYTISNINLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   E   + L                 I   ++G         D   +   +    
Sbjct: 232 TDLKTVEEFRDMVLRSTGGR----------VIRVRDIGRAELGPDNTDTSSQTSTLRPPN 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              T               +    I     +   L+A   P     V          S  
Sbjct: 282 GKPTPRPSIFVGLEPSPTGNPLTIISRLNEIMPKLKATLPPGIDVRVPYETAHFIQASID 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      +V++V+++ +   +  +V   +I L+++  + L+   G +L L ++  +
Sbjct: 342 EVTETFIEALLIVILVIYLSLGTVRAVIVPIATIPLSMLGAVGLMYTFGFSLNLLTLLAM 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     + +S F +  +G       +    +T       + F 
Sbjct: 402 VLSIGLVVDDAIVVIENVHRHIEEGKSPFDAALLGAREVAGPVVAMTLTLTAVYAPIAFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIP 535
           G   G   R FA+T+  S+++S   A+++   M   +++ K+ +     +   +  F+  
Sbjct: 462 GGLTGTLFREFALTLAGSVIVSGVVALTLSPLMSAKLLKAKEKEGFMERMAERAFGFMTA 521

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +     R   V +     I  +  +  H     +       +   A +    + + 
Sbjct: 522 RYETVLDFSLRHRWVPLGTAAVIFLLIPVMLHVSQSELAPNEDQDIVYTAVKAPQYANLH 581

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                 Q             +           +      L+   K+      +       
Sbjct: 582 YVETYAQALYEKMSEIPEGHSHWQMNGIDGIANSVGGVNLDDWGKRKRNADQIQMDLQQR 641

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
           +   + +   + +    +  S   + + + +R    +                G  +   
Sbjct: 642 VASIQGTSVFVFQMG-ALPGSTGGLPVQMVVRSDDSY------------RNVFGVMSHLR 688

Query: 716 IEFNLTAVAAVL 727
            E + + + AV+
Sbjct: 689 DEASKSGLFAVV 700



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 116/387 (29%), Gaps = 9/387 (2%)

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           + D    R              +T    +     +   A  M   I      +    + +
Sbjct: 123 AYDPVIKRTSGGFTAVAYIGFASTTRPLYEISDYIHRVAAPMLSGIEGVSEISYFGEQRL 182

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
            + +    +  + +                Q    R  GV      ++ +         +
Sbjct: 183 SMRLWLDPEKLAANDMTGEDVAQAIRENNFQAAPGRIRGVYTISNINLNTDLKTVEEFRD 242

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
             +   GG  + V      +L    ++  S              +  +            
Sbjct: 243 MVLRSTGGRVIRVRDIGRAELGPDNTDTSSQTSTLRPPNGKPTPRPSIFVGLEPSPTGNP 302

Query: 631 QTRV--LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            T +  L  +  K+   +P               +  I +     I + + +++ I++  
Sbjct: 303 LTIISRLNEIMPKLKATLPPGIDVRVPYETAHFIQASIDEVTETFIEALLIVILVIYLSL 362

Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 +  I T+ L +   +G    FG   NL  + A++  IG  V+D +VV + +   
Sbjct: 363 GTVRAVIVPIATIPLSMLGAVGLMYTFGFSLNLLTLLAMVLSIGLVVDDAIVVIENVH-- 420

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +      S  D       E  G  V  ++       P+A  G   G++   FA+ +A  
Sbjct: 421 -RHIEEGKSPFDAALLGAREVAGPVVAMTLTLTAVYAPIAFMGGLTGTLFREFALTLAGS 479

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++V+   ++ ++  +   +   + K  
Sbjct: 480 VIVSGVVALTLSPLMSAKLLKAKEKEG 506



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 81/233 (34%), Gaps = 10/233 (4%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            + +       F  + +   +     G ++         K            Q+      +
Sbjct: 793  VDVEPNRLPQFGQQNSATFQAILAKGVTMGDAVSFLKAKAAEFPPGYSYDWQSDSRQYVQ 852

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFN 719
                L    I   + + IA+ + + +++  +   +  + ++ L +   L   AL     N
Sbjct: 853  EGNAL----IFAFLFALIAIYLVLSVQYNSFTDPVIILVSVPLSVFGALIPLALGVTTLN 908

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            +     ++TLIG      +++ +   + +  +  ++  R  I+ +        + T+ A 
Sbjct: 909  IYTEIGLITLIGLVSKHGILMVEFANEML--HRDNVDRRTAIETAAAIRFRPIIMTTAAM 966

Query: 780  FISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             + + P+ +    G +        +  G++V  S ++F+   +   I   R K
Sbjct: 967  VVGLAPLVIATGAGANSRFGLGTVIVVGMIVGTSMTLFVLPSVYTVIRPRRGK 1019


>gi|193062941|ref|ZP_03044034.1| multidrug resistance protein MdtB [Escherichia coli E22]
 gi|260844685|ref|YP_003222463.1| multidrug efflux system, subunit B [Escherichia coli O103:H2 str.
           12009]
 gi|192931584|gb|EDV84185.1| multidrug resistance protein MdtB [Escherichia coli E22]
 gi|257759832|dbj|BAI31329.1| multidrug efflux system, subunit B [Escherichia coli O103:H2 str.
           12009]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|323187846|gb|EFZ73143.1| multidrug resistance protein mdtB [Escherichia coli RN587/1]
 gi|324006447|gb|EGB75666.1| putative ATP synthase F0, A subunit [Escherichia coli MS 57-2]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAITLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|150004233|ref|YP_001298977.1| AcrB/AcrD/AcrF family multidrug resistance protein [Bacteroides
           vulgatus ATCC 8482]
 gi|149932657|gb|ABR39355.1| multidrug resistance protein, AcrB/AcrD family [Bacteroides
           vulgatus ATCC 8482]
          Length = 1071

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/699 (10%), Positives = 180/699 (25%), Gaps = 59/699 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P               + +    
Sbjct: 9   RPILSAVISISIVVVGII-----GLFTLPVEQYPDIAPPT-------------IQVSTSY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  LQ      L   +   E +   +          IT+ F      +  A  V  
Sbjct: 51  FGASAETLQKSVIAPLEEAINGVENMTYMTSTASNAGVVDITVYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  +  +  + T+  +   + +               S  I       I   
Sbjct: 111 RVSKATGQLPAEVTQVGVTTSKRQTSILQMFSLYSPDDSYDEKFLSNYISINLKPAILRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     +        +     P  + Q     + ++      N       FG        
Sbjct: 171 QGVGDMMIMG-GDYSMRIWMKPDVMAQYKLIPSDVTQVLAEQNIESATGSFGENSDETYQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                    +                   +    +                +I       
Sbjct: 230 YTMKYKGRLI----------------TPEEFGEIVIRSSDNGEVLKLKEIADIEMGEESY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        +    A  +         +     R         +    +      
Sbjct: 274 AYHGAMNGHPGISCMIFQTAGSNATEVNNNIDVFLEEARKDLPKGVEMVQVMSSNDFLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++++++ +   +  ++    I +++I T A +S+ G ++ L ++
Sbjct: 334 SIHEVIKTLFEAIFLVILIVYVFLQDIRSTIIPLVGIIVSLIGTFAFMSIAGFSINLITL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG  VD  I+V E ++         S   S+D     + + I  S +   +   
Sbjct: 394 FALVLVIGTVVDDAIVVVEAVQARFDVGYRSSYMASIDAMKGISNAVISSSLVFMAVFIP 453

Query: 476 VLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519
           V F  G        F +TM +++ IS   A+++  A+                     + 
Sbjct: 454 VSFMSGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALFLKPYINEDGTEKNNFAARF 513

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            K+ +    +        +     R       ++    + +  +  T       + +G +
Sbjct: 514 RKAFNAAFDAMIERYKKGVLFFIKRKWMVWTLLAASVVLLAFLMNTTKTSLVPDEDQGVV 573

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V       L      +  ++   +           +       G   +   ++  +K
Sbjct: 574 FVNVSTAAGSSLKTTNDVMMRIEKRMMDIPQVL-HVQRVAGYGLLAGQGNSFGMLILKLK 632

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                    + +Q         + ++    I  +    I
Sbjct: 633 PWDEREGKENDVQAVIGQVYGRTADIKDASIFAISPGMI 671



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 79/201 (39%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +      LE  +K + + V +  + ++         E+I+     +    + +LI     
Sbjct: 301 NNNIDVFLEEARKDLPKGVEMVQVMSSNDFLYASIHEVIKTLFEAI---FLVILIVYVFL 357

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 +  +  +I+ +  T  F ++ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 358 QDIRSTIIPLVGIIVSLIGTFAFMSIAGFSINLITLFALVLVIGTVVDDAIVVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++   G+       F + MA  
Sbjct: 418 FDVGYRSSYMASI--DAMKGISNAVISSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +      
Sbjct: 476 VGISAVNALTLSPALCALFLK 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 76/252 (30%), Gaps = 10/252 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E   +
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMFNSIAVNAMPAEGYSTGDAIRAVQETAVQ 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I   I  ++I  I   +Y      +      + ++
Sbjct: 850  ALPKGFGYDFGGITREETDQGGTTIIIFAICFLMIYLILSALY----ESFLIPFAVLLSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               +  +  F  + G+E N+     ++ LIG      +++ +   +        +S    
Sbjct: 906  PFGLMGSFLFAKMMGLENNIYLQTGLIMLIGLLAKTAILLTEYATE---RRKAGMSLTSA 962

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
               +    L   + T++     + P+ V    G +   S       G+V+   + +FI  
Sbjct: 963  ALSAAKARLRPILMTALTMIFGLFPLMVASGVGANGNSSLGTGTVGGMVIGTLALLFIVP 1022

Query: 818  PILLFIYDWRAK 829
             + +     + K
Sbjct: 1023 SLFIVFQYLQEK 1034


>gi|320668103|gb|EFX34982.1| multidrug efflux system subunit MdtB [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|167918328|ref|ZP_02505419.1| multidrug resistance protein MdtC [Burkholderia pseudomallei
           BCC215]
          Length = 1100

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 160/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL   +   +       FP+ +                  L    
Sbjct: 10  RPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTIL--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVAEMTSMSSVGNARIVLQFNLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  + K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPANLKSNPTYRKVNPADSPIMV-VSLTSKTASPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSLSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +G H      N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEAGPHRYQLYTNDQATKAAQYKDLVIAYRNHAAVSLSDVSSVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        I       +   TIE        L A                    S +  
Sbjct: 275 MNGERAVLVILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG +L   S+  +++
Sbjct: 335 EHTLIIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++        +           + + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLVVSLTLTPMMCARLLPEAHAPRDEGRVARWLERGFEWMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +       +  +  +  +   Y +  KG     
Sbjct: 515 RGYERTLSWALRHPFTILMTLVATIALNIALYIVVPKGFFPQQ 557



 Score = 82.8 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +S + M++++++R  W   L     + + I  T G   L G   N  ++ A++   
Sbjct: 338 LIIAVSLVVMVVFLFLR-NWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +                 E     +  S++     LP+ + G
Sbjct: 397 GFVVDDAIVVLENI---ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G V      FA+ ++  I V+   S+ +  
Sbjct: 454 GIVGRLFREFALTLSLAIAVSLVVSLTLTP 483



 Score = 44.7 bits (103), Expect = 0.065,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 93/215 (43%), Gaps = 7/215 (3%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + E+    TIQ +     +  +E ++   + ++ +
Sbjct: 869  VATTISFNLPPGVSLSKATQVIYQTMAEVGVPPTIQGSFQGTAQAFQESLKDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LAAVYIVLGILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D     +       S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFA---IDASRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAE 1045

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++V+   +++    + L++   R
Sbjct: 1046 MRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLR 1080


>gi|222033840|emb|CAP76581.1| Multidrug resistance protein mdtB [Escherichia coli LF82]
 gi|312946697|gb|ADR27524.1| multidrug efflux system subunit MdtB [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSESVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|110642285|ref|YP_670015.1| multidrug efflux system subunit MdtB [Escherichia coli 536]
 gi|331647728|ref|ZP_08348820.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli M605]
 gi|123147933|sp|Q0TG15|MDTB_ECOL5 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|110343877|gb|ABG70114.1| multidrug transporter [Escherichia coli 536]
 gi|281179173|dbj|BAI55503.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|330911912|gb|EGH40422.1| multidrug transporter MdtB [Escherichia coli AA86]
 gi|331043452|gb|EGI15590.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Escherichia coli M605]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSESVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|306814802|ref|ZP_07448964.1| multidrug efflux system subunit MdtB [Escherichia coli NC101]
 gi|305852196|gb|EFM52648.1| multidrug efflux system subunit MdtB [Escherichia coli NC101]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSESVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|167754016|ref|ZP_02426143.1| hypothetical protein ALIPUT_02303 [Alistipes putredinis DSM 17216]
 gi|167658641|gb|EDS02771.1| hypothetical protein ALIPUT_02303 [Alistipes putredinis DSM 17216]
          Length = 1032

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/661 (10%), Positives = 172/661 (26%), Gaps = 48/661 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +     ++I     L    +D++P  +P               + +    
Sbjct: 9   RPVFSTVLSII-----IVIVGAIGLALLPVDQYPQIVPPV-------------VRVSASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                  +       +   L    G+         +     T++F  S   +  A  V  
Sbjct: 51  PGADAQTVTQAVATPIEQELNGTPGMIYMESSSSNSGGFSATVTFDISVDPDLAAVDVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+   ++L  +  +N +    +    ++             I  S       +D +   
Sbjct: 111 RLKKAEARLPAEVVQNGISVEKQAASKLMTITLLSSDPKFDEIYLSNYATLNVLDLLRRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P +L  L  T   +       N      + G   +   D
Sbjct: 171 PGVGSISNVGSRYYAMQIWVQPDKLADLGLTVKDLQSALKDQNRESAAGVLGQAPMTGLD 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                           +            +    +                 I    +  
Sbjct: 231 VT--------------IPITAQGRLSSVSQFEDIVIRANPDGSIIRLKDVARISLEASSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +     E        +           +          
Sbjct: 277 NTESGINGGNAAVLEIKMLPGANAMEVAEAVKAQMEEISRNFPEGISYEIPFDMTTYISE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T  ++ + G +L + ++
Sbjct: 337 SIHHVYQTLFEALLLVILVVFLSLQSWRATLIPIVAVPISLIGTFGVMLVFGFSLNMLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIA 473
            G++L IG+ VD  I+V E +    N +  S + +          A   +        + 
Sbjct: 397 LGLILAIGIVVDDAIVVVENVDRIMNEEGLSPYEATKKAMRSLSGALIAMSLVLCAVFVP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
              L    G   R F IT+ +S++IS   A+++   M  ++        + +  + I+  
Sbjct: 457 VSFLSGITGQLYRQFTITIAVSVIISTVVALTLSPVMCAYLLKPDRGGRKKRFFRYINFG 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L    I      +R       ++     +            + +G   + +   
Sbjct: 517 LAKGNKLYGRMIGRALAHSRRMFAAFGVVLIGIWLMNKLVPESFMPQEDQGYFTVELELP 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +   R+  +      +   + +   N          +       + +   K  E  
Sbjct: 577 EGATIERTRTVTDRAMAFLMQDPDVEYVLNVTGSSPRVGSNQARSQLTVILKSWKERESE 636

Query: 647 P 647
            
Sbjct: 637 D 637



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 61/148 (41%), Gaps = 8/148 (5%)

Query: 689  KWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  I +L +  I   LG + + G+E N+     ++ L+G    + +++ +  ++ 
Sbjct: 888  SWSVPVAVILSLPVAGIGAYLGIW-VCGLENNIYFQIGLVMLVGLVAKNAILIVEFAKEE 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +              K+ +      V TS+A  + +LP+      G +        + FG
Sbjct: 947  V---EKGRDVVSAALKAAHLRFRPIVMTSLAFILGLLPLVFASGPGSASRQGIGTGVFFG 1003

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++VA S  I       ++IY  +AK  +
Sbjct: 1004 MLVAISVGIVFVPFFFVWIYRIKAKLKK 1031



 Score = 44.7 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 60/154 (38%), Gaps = 18/154 (11%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
            W   L  I  + + +  T G   +FG   N+  +  ++  IG  V+D +VV    DR+ 
Sbjct: 362 SWRATLIPIVAVPISLIGTFGVMLVFGFSLNMLTLLGLILAIGIVVDDAIVVVENVDRI- 420

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMA 802
               +    +S  +   K++    G  +  S+      +P+  + G  G +   F I   
Sbjct: 421 ----MNEEGLSPYEATKKAMRSLSGALIAMSLVLCAVFVPVSFLSGITGQLYRQFTIT-- 474

Query: 803 FG--IVVAASSSIFIAAPIL--LFIYDWRAKNAR 832
               ++++   ++   +P++    +   R    +
Sbjct: 475 IAVSVIISTVVAL-TLSPVMCAYLLKPDRGGRKK 507


>gi|58583812|ref|YP_202828.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84625615|ref|YP_452987.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|58428406|gb|AAW77443.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84369555|dbj|BAE70713.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 1082

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/564 (10%), Positives = 157/564 (27%), Gaps = 40/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +  +G+L        Q  +   P     + +                 
Sbjct: 9   RRPIATSLLMAGVLLLGIL-----GYRQLPVSALPEIDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R     +  V   ++ 
Sbjct: 55  NATTMASLVTTPLERQFGQISGLKMMTSDSSAGLSTIILQFSMERDINIASQDVQAAIRQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 115 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDSLPLREVNRYADAILAQRLSQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  E                               R        N+   +       
Sbjct: 232 QLTDAAE--------------------YRQTIISYKDGRPVRLADVANVVDGVENDQLAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   L++         V          S   
Sbjct: 272 WADNKPAVLLEIRRQPSANIVQTVEQIRSILPQLQSVLPADVHLEVLSDRTETIRASVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T A+++  G +L   S+  +V
Sbjct: 332 VKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFAVMAFAGMSLDNLSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ SM  ++++   M  ++++   +   +             +
Sbjct: 452 GVTGRLFHEFAWVLSIAVVTSMLVSLTLTPMMCAYLLKPDALPEGEDAHERATAAGKRNL 511

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
             + +      +   +     ++ 
Sbjct: 512 WTRTVGIYERSLDWVLAHQPLTLA 535



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 91/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++ +      +      +   +        +    V L+ +   S 
Sbjct: 230 NDQLTDAAEYRQTIISYKDGRPVRLADVANVVDGVENDQLAAWADNKPAVLLEIRRQPSA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I+ +  +I++
Sbjct: 290 NIVQTVEQIRSILPQLQSVLPADVHLEVLSDRTETIRASVHEVKFTLVLTIALVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   +     + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATIIPSVAVPLSLAGTFAVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S  +  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V +   S+ +  
Sbjct: 466 SIAVVTSMLVSLTLTP 481



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 89/234 (38%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L   ++ +        ++   V + +      + ++ +  ++K   E+   + +    
Sbjct: 823  AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKARQELKIPTQVHAQF 882

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +             I  ++ S + + I + + ++ +   L  I+TL       L    + 
Sbjct: 883  VGKAAEFTGSQTDIIWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMC 942

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D     +       +  D I ++        + 
Sbjct: 943  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGANAHDAIRRACLLRFRPIMM 999

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA +  LP+A+    G  +     I +  G++++   +++    I L++  
Sbjct: 1000 TTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1053


>gi|78211888|ref|YP_380667.1| RND family multidrug efflux transporter [Synechococcus sp. CC9605]
 gi|78196347|gb|ABB34112.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           CC9605]
          Length = 1036

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 84/644 (13%), Positives = 175/644 (27%), Gaps = 40/644 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+   +I   G             L+  P   P                    
Sbjct: 9   LRRPVLTVVCSLLILLAGCTALF-----GLGLEDLPPLAPTRV---------SVSANFPA 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++  + L+       + RQ    I+L F      E  A KV   + 
Sbjct: 55  ASPEVVEQSVTRVLEQQLNGLEGVESISSTSRQGGASISLHFKTG-DPELNAIKVQNEVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + +L     +  L      E  +++   +           +  + +   D++  +   
Sbjct: 114 LASRRLPQAVTRQGLQVRRSSEDLLMILGFSHPLDQYVPTFLTGWLDQTLRDELLTTPGI 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                     +      DP RL Q   T  ++S      N        G   +       
Sbjct: 174 GDVQIFGSSELSFRLWLDPQRLEQTNLTLGEVSRALAEQNVLAAIGSIGAAPVPAGQVLS 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             VE +  +                    + +   + G     +              + 
Sbjct: 234 LPVEAEGRLRSQSDFEN------------LVLRRLDNGGLLRLKDVGRVALGQRNYGREA 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +              L A   P     +          +  
Sbjct: 282 MNLAGERSVAVGVYQRDGANALDVSRAIKRKLQQLEASFPPGIELSMIVDVADTVQANLD 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LVL+VL + +   +  L+   ++ + ++ +L+L+ L G+ L    + G+
Sbjct: 342 RTFITLRDAVLLVLVVLVLFLGRWRLALIPGLAVPVALVGSLSLVKLSGSNLNSLILFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATVVLFF 479
           VL  G+ VD  I+V+E I     +      + +   +  A + +  S + A +   VL  
Sbjct: 402 VLATGIVVDDAIVVSEDIAGRIERGTPPEQAAEDAMAELATAVVATSLVLAAVFLPVLLI 461

Query: 480 FG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSIDINP 527
            G  G   +  A+ +  +IL S   A+S        ++            K  + +    
Sbjct: 462 PGSIGRLYQPIALAISGAILFSTLNALSFTPMACARVLGPGGGRLPGAIGKLSRWLRHGM 521

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +     R R   + +     I +  L          D +G I+       
Sbjct: 522 QTLQSQYSKQLEHWLQRRRRIALVLLSGLVITASGLAVMPTAFIPDDDQGQIRGYFTLPD 581

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
              L    + ++ ++              +      Q G+    
Sbjct: 582 GASLERSMAVMDDIRRVVSEEPQVRTGNFYAGSSFGQSGEDRGS 625



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
              +W  AL     + + +  +L    L G   N   +  ++   G  V+D +VV + + 
Sbjct: 361 FLGRWRLALIPGLAVPVALVGSLSLVKLSGSNLNSLILFGLVLATGIVVDDAIVVSEDI- 419

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
                           + ++ E     V TS+      LP+ +  GS+       A+ ++
Sbjct: 420 --AGRIERGTPPEQAAEDAMAELATAVVATSLVLAAVFLPVLLIPGSIGRLYQPIALAIS 477

Query: 803 FGIVVAASSSIFIAA 817
             I+ +  +++    
Sbjct: 478 GAILFSTLNALSFTP 492



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 670  IVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  V+ +    ++Y+    +   +   L  + T+ L +   L    L G+  ++     +
Sbjct: 874  VTWVLFALGVTVVYLLLAALYESFIDPLIILLTVPLALLGALIGLKLRGLPLDVYGQMGL 933

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            L L+  +  + +++ +      +     +   +    +    +   + T++ +    LP+
Sbjct: 934  LVLVSLAAKNGILIVEFAN---QRIAAGLPLHEATVVAAVNRMRPILLTAITSLAGFLPL 990

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                  G +   S    +  G++VA+  S+++   + L +  WR
Sbjct: 991  LFAQGTGAASRISIGTVVFSGLLVASLLSLYVVPTVYLLLKRWR 1034


>gi|53714828|ref|YP_100820.1| AcrB/AcrD family multidrug resistance protein [Bacteroides fragilis
           YCH46]
 gi|52217693|dbj|BAD50286.1| AcrB/AcrD family multidrug resistance protein [Bacteroides fragilis
           YCH46]
          Length = 1068

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/694 (10%), Positives = 180/694 (25%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFTLPVEQYPDIAPPTIM---------VSTSYFGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S        IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSSATNAGTVSITVYFKQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           +  I      +I       
Sbjct: 115 ATGQLPSEVNQVGVTTSKRQTSILQMFSLHSPDDSYDEAFLANYISINLKPEILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        L     P  + Q     + +S      N       FG            
Sbjct: 175 DMMIMG-GDYSLRIWMKPDVMAQYRLIPSDVSTVLAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++                   +    +       +         I           
Sbjct: 234 YKGRRI----------------TPEEFGEIVIRSTDDGQVLKLKDIATIELGQESYAYSG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +               R              +      S   
Sbjct: 278 TTDGHNGVSCMLFQTAGSNATEVNNQINRFLEEARRELPQGVELTQLMSSNDFLYASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLLEAILLVILVVYVFLQDIRSTLIPLVGIIVSLIGTFAFMAIAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 SGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALLLKPYINEDGTQKQNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        I + F++ R+    + I      + L+ T   +   D   G+    +
Sbjct: 518 NAAFDVVVEKYKGIVLFFIKRRWLTGSLLIASIALLVVLMNTTKTSLVPDEDQGVVFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +           ++       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLRTTDDVMKRIEERMEQIPQVKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    +  +    I
Sbjct: 638 PGKEDDVQAVIGQVYGRTADIKDASVFAISPGMI 671



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 87/201 (43%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +    R LE  ++++ + V L+ + ++         E+++  +  +++  + + +++   
Sbjct: 301 NNQINRFLEEARRELPQGVELTQLMSSNDFLYASIHEVVKTLLEAILLVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  +I+ +  T  F A+ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 359 -DIRSTLIPLVGIIVSLIGTFAFMAIAGFSINLITLFALVLVIGTVVDDAIVVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++   G+       F + MA  
Sbjct: 418 FDVGYKSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +   +  
Sbjct: 476 VGISAVNALTLSPALCALLLK 496



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 65/201 (32%), Gaps = 11/201 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            + ++                  G     E  + G   +I     ++IY+    +   +  
Sbjct: 838  DAIRAVQKTASTSLPKGYGYDYGGITREENQQSGTTAIIFGICFLMIYLILSALYESFLI 897

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + ++   +  +  F  +FG+E N+     ++ LIG      +++     +      
Sbjct: 898  PFAVLLSVPCGLMGSFLFARMFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERR 953

Query: 753  T-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +        +    L   + T++     +LP+ V    G +   S       G+V+ 
Sbjct: 954  KAGMGLIASALSAAKARLRPILMTALTMIFGLLPLMVASGVGANGNRSLGTGAVGGMVIG 1013

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
              + +FI   + +     + +
Sbjct: 1014 TLALLFIVPSLFIAFQWLQER 1034


>gi|332755908|gb|EGJ86262.1| multidrug resistance protein mdtB [Shigella flexneri K-671]
 gi|333017092|gb|EGK36413.1| multidrug resistance protein mdtB [Shigella flexneri K-304]
          Length = 852

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 168/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +        +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLNVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNSFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|281423707|ref|ZP_06254620.1| multidrug resistance protein, AcrB/AcrD family [Prevotella oris
           F0302]
 gi|281402259|gb|EFB33090.1| multidrug resistance protein, AcrB/AcrD family [Prevotella oris
           F0302]
          Length = 1090

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 80/700 (11%), Positives = 197/700 (28%), Gaps = 60/700 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G +      L    ++++P   P               + +   
Sbjct: 8   KRPVLSTVISIFFVLLGAI-----GLVSLPIEQYPDIAPPT-------------ISVMTS 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                   +       L   +   E +   S     +    IT+ F      +  A  V 
Sbjct: 50  YTGADAQTVLNSVITPLEESINGVENMTYMSSTATNSGTAMITVYFKQGSNADMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   + L  +  +  +  +  +  ++++     +         +       + Q+  
Sbjct: 110 NRVQQAQALLPAEVTRAGVTVSKRQSSNVIMYSLTTEDGRYDGQFLTNYNNINIVPQLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +     P +++Q     + ++      N        G      S
Sbjct: 170 IKGVGDVQTPGTETYSMRIWLQPDKMKQYGLVPSDITGVLAEQNIEAAPGSLGE---SGS 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y +  K  +                 +    +    M            +     +
Sbjct: 227 VAYEYALRYKGRL-------------KSVPEFENIMLKSSMTGETLRLKDVAKVELGALM 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +         + +  A  +     +              P     +E+       
Sbjct: 274 YNVKLINNGQPAVMGMVNQIAGSNATDIAKAVKSALKEASKSFPPGMEYTIEQDTTEFLF 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV  V+++ +   +  L+   ++ + +I T   L + G ++ L  
Sbjct: 334 ASIEEVVITLFITLALVFFVVYIFLQDIRSTLIPLIAVPVALIGTFFFLWVFGFSINLLV 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ ++L I + VD  I+V E +  +  +   S   +     +     I    +      V
Sbjct: 394 LSALLLAIAIVVDDAIVVVEAVHAKLDQGYKSALTASIDAMNEISGAIISITLVMAAVFV 453

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYK 518
            + F GG +    R F +TM LSI+IS   A+++  A+   +                 +
Sbjct: 454 PVSFLGGTSGTFYREFGVTMALSIVISALNALTLSPALCAILLKPHDEEKDETNKNFVSR 513

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
              + +             +        + G+ +++  +   I + FT       +  G 
Sbjct: 514 FHSNFNRIFDKTTNKYKKGVTRIINHKVWAGIAVAVGIAALVITMKFTKTGLVPDEDTGT 573

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + + AN           +E +     S       +            S   T ++++ 
Sbjct: 574 LFVMISANPGTSQERTHEIVEEVDKMLASNPAIQRREGIAGYNFIAGQGSDQATFIIKLK 633

Query: 639 KKKITEIVPLSTIQNTEIVGPKIS---RELIRKGIVGVII 675
             +       + I+N    G  I+     L    ++G+I 
Sbjct: 634 PFEERSGGFFTRIKNAISQGDPIALLVNPLESNSVLGMIY 673



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/398 (9%), Positives = 109/398 (27%), Gaps = 21/398 (5%)

Query: 453  DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
            +      Y          ++A       G     G  +T+       +    ++ +  + 
Sbjct: 666  NSVLGMIYKQTASIKDAQILAFGPPMVPGFSVQNGITMTLQDKTGGDLNKFFNVAQDFLK 725

Query: 513  FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG 572
             + +  ++K         +      + +   +       + +      +  ++    N  
Sbjct: 726  ELNKRPEVKQAMTTYNPNYPQYMVDVDVAKTKQAGISPTVVLSTLQGYLGGMYASNFNAY 785

Query: 573  -------IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK----NFLVRL 621
                   I      +L       + +      +  +       + +        N    +
Sbjct: 786  GKLYRVMIQAAPNDRLRPEQLSNIYVRTASGQMSPVSEFCTLKRVYGPSNIARFNLYTAI 845

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                  +   +    M          +      E  G   S          +++    + 
Sbjct: 846  NVSVTPNTGYSSGQAMQAIAEVSKNTMPQGYGYEYSGLTRSEAESSNA-TAIVLVLCVIF 904

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +Y+ +      +   L  I ++   +     F  LFG   ++    +++ LIG    + +
Sbjct: 905  VYLILSAQYESYVLPLSVILSIPFGLAGAFLFTMLFGHSNDIYMQISLIMLIGLLAKNAI 964

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIG 795
            ++     +      T ++ +          L   + TS+A  I +LP+    G       
Sbjct: 965  LIVQFALE---RRHTGMAIKYSAILGAAARLRPILMTSLAMVIGLLPLMFASGVGKNGNQ 1021

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +       G+++     +FI   + +     + K + +
Sbjct: 1022 TLGAAAVGGMLIGTLCQLFIVPALFVAFQWLQEKISPL 1059



 Score = 40.8 bits (93), Expect = 0.87,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 93/257 (36%), Gaps = 13/257 (5%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + + ++   +   ++   +      +            V            T + + 
Sbjct: 245 FENIMLKSSMTGETLRLKDVAKVELGALMYNVKLINNGQPAVMGMVNQIAGSNATDIAKA 304

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
           VK  + E            +    +  L   I + ++ + I+   +   ++I        
Sbjct: 305 VKSALKEASKSFPPGMEYTIEQDTTEFLFASIEEVVITLFITLALVFFVVYIFLQDIRST 364

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  +  + + +  T  F  +FG   NL  ++A+L  I   V+D +VV + +   +     
Sbjct: 365 LIPLIAVPVALIGTFFFLWVFGFSINLLVLSALLLAIAIVVDDAIVVVEAVHAKLDQGYK 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFIS--VLPMAVWGGSV---IGSFAIPMAFGIVVA 808
           S     +   ++NE  G  +  S+   ++   +P++  GG+       F + MA  IV++
Sbjct: 425 SALTASI--DAMNEISGAII--SITLVMAAVFVPVSFLGGTSGTFYREFGVTMALSIVIS 480

Query: 809 ASSSIFIAAPILLFIYD 825
           A +++ ++  +   +  
Sbjct: 481 ALNALTLSPALCAILLK 497


>gi|86358898|ref|YP_470790.1| acriflavin resistance efflux transporter [Rhizobium etli CFN 42]
 gi|86283000|gb|ABC92063.1| probable acriflavin resistance protein (transporter protein)
           [Rhizobium etli CFN 42]
          Length = 1106

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 77/669 (11%), Positives = 196/669 (29%), Gaps = 42/669 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  IG+            + RFP+                  +     
Sbjct: 9   RNPIAPLLAFCLLIFIGI-----QSFNTLPITRFPNIDVPLV---------SISVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    ++  + F      E     V   +  
Sbjct: 55  SPAELEMQVTKEIEDAIASITGIDEIQSTVTDGSSQTNVMFRMEVPTEQAVQDVKDAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    +  ++     +  +I     +         E S  +       +       
Sbjct: 115 IRSDLPATAEAPIVTKVDVEGQAIQTFAVSSPD--MSLEELSWFVDDTIKRALQGQAGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E  P +L     T A ++      N         V     +     
Sbjct: 173 RVDRYGGAEREVRIELAPGKLDAYGITAASVNDQLRGTNVDLGSGRGQVAGSEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  E++   +   +  F   +   V+  +++E  +   F  T               
Sbjct: 233 DARNVAELADTTIALPSGRFVKLSDLGVIKDTYEEPKSFSRFNDTP-------------- 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +   ++      +        P     + + +V    G+   
Sbjct: 279 -------VVTFGVFRSKGASEVSVAETVAQSLDKVRSENPNVKIEMIDDSVYFTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+ + +   +  L++  ++ L  I T  ++ ++G +L L S   + 
Sbjct: 332 AIHTLLEGALLAVIVVLLFLRNWRATLISAIALPLAAIPTFWVMDMMGFSLNLVSFLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    +  ++ + +           +  +  T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIKMGKTPYRAAIEAADEIGLAVIATTFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIR--YKKMKSIDINPLSRFFLIPD 536
           G   +    F +T+  S+  S+  A  I   M  +++R         D + L        
Sbjct: 452 GIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMRAEDGMEDHHDNDGLLMKGYTRL 511

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                  +   +   ++ +  +     L        +  +   ++ +    P +  +  +
Sbjct: 512 IRGTTGHKYSRYLTLLAAVGFLVGSVFLLMKVPGSFLPPEDASRIVLSVELPPNARLDDT 571

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              +  I D        E  F++      GD   +   + +   K+ + +    + +   
Sbjct: 572 EKTTKAIYDRVKNINGVESVFVLGGASPKGDLELRRATITLALHKLDQSLVKKVVNDVFG 631

Query: 657 VGPKISREL 665
             P I   L
Sbjct: 632 RIPAIGPML 640



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 68/233 (29%), Gaps = 7/233 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       SF  F+        +    G S                    +       
Sbjct: 260 VIKDTYEEPKSFSRFNDTPVVTFGVFRSKGASEVSVAETVAQSLDKVRSENPNVKIEMID 319

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +       I  ++  + +A+++ +     W   L +   L L    T     + G
Sbjct: 320 DSVYFTYGNYEAAIHTLLEGALLAVIVVLLFLRNWRATLISAIALPLAAIPTFWVMDMMG 379

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL +  A+    G  V+D +V  + +    +      +      ++ +E     + T
Sbjct: 380 FSLNLVSFLALTLATGILVDDAIVEIENI---ARHIKMGKTPYRAAIEAADEIGLAVIAT 436

Query: 776 SMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +       +P++   G        F + +AF +  +   +  I   +  ++  
Sbjct: 437 TFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMR 489



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/121 (16%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + +L L I        +     ++  +  +L L+G    + +++ D   +  
Sbjct: 897  DVIQPFTILFSLPLAIGGVAAALIITSNPLSMPVMIGILMLMGIVTKNAILLVDFAIETR 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  ++  + + ++  +     + TS+A    +LP A+    GGS     AI +  GI
Sbjct: 957  HQ---GMTRVEAMVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGI 1013

Query: 806  V 806
            +
Sbjct: 1014 I 1014


>gi|15802556|ref|NP_288583.1| multidrug efflux system subunit MdtB [Escherichia coli O157:H7
           EDL933]
 gi|15832137|ref|NP_310910.1| multidrug efflux system subunit MdtB [Escherichia coli O157:H7 str.
           Sakai]
 gi|168761821|ref|ZP_02786828.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4501]
 gi|168788748|ref|ZP_02813755.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC869]
 gi|217329519|ref|ZP_03445598.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           TW14588]
 gi|261225075|ref|ZP_05939356.1| multidrug efflux system subunit MdtB [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257579|ref|ZP_05950112.1| multidrug efflux system subunit MdtB [Escherichia coli O157:H7 str.
           FRIK966]
 gi|60390125|sp|Q8X7J4|MDTB_ECO57 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|12516281|gb|AAG57138.1|AE005434_2 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
 gi|13362352|dbj|BAB36306.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|189367831|gb|EDU86247.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4501]
 gi|189371529|gb|EDU89945.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC869]
 gi|209747960|gb|ACI72287.1| hypothetical protein ECs2883 [Escherichia coli]
 gi|217317287|gb|EEC25716.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           TW14588]
 gi|320191758|gb|EFW66406.1| Multidrug transporter MdtB [Escherichia coli O157:H7 str. EC1212]
 gi|320641374|gb|EFX10829.1| multidrug efflux system subunit MdtB [Escherichia coli O157:H7 str.
           G5101]
 gi|320646744|gb|EFX15631.1| multidrug efflux system subunit MdtB [Escherichia coli O157:H- str.
           493-89]
 gi|320652021|gb|EFX20374.1| multidrug efflux system subunit MdtB [Escherichia coli O157:H- str.
           H 2687]
 gi|326338432|gb|EGD62260.1| Multidrug transporter MdtB [Escherichia coli O157:H7 str. 1044]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|298375564|ref|ZP_06985521.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_19]
 gi|298268064|gb|EFI09720.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_19]
          Length = 1067

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 66/694 (9%), Positives = 174/694 (25%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIMVAGII-----GLFTLPVEQYPDIAPPTVM---------VSTTYFGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       +        IT+ F      +  A  V   +  
Sbjct: 55  AETMQKSVVAPLEEAINGVEDMTYMTSTATNSGTATITIYFQQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +                  I      +I       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSMLQIFSLYSPDGSYDENFLCNYISINLKPEILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +     P  + Q     + ++      N        G            
Sbjct: 175 ELMVMG-GDYSMRIWMKPDVMAQYKLIPSDVTSVLAEQNIESATGSLGENSDETYQ---- 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            +       +    +                +I           
Sbjct: 230 ------------YTMKYSGRLLTPEEFGDIVIRSTEDGEVLKLKEIADIELGKESYAYIG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +                         +           S   
Sbjct: 278 QTNGKPGISCMVFQTAGSNATEVNNKIDAFLEEASKDFPKGIEVVKLMSTNDFLYASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   +I +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDIRSTLIPLVAIVVSLIGTFAFMTVAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSN---ITALIATVVL 477
           L IG  VD  I+V E ++        S + +         S I  ++   +   I    +
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASMDAMKGLTSAIVSTSLVFMGVFIPVSFM 457

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
               G     F +TM  ++ IS   A+++  A+   +                 + +   
Sbjct: 458 SGTSGTFYTQFGLTMAAAVGISTVNALTLSPALCAILLKPYINEDGTQKNNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                          + F++ ++    +     +  I L+ T   +   D   G     +
Sbjct: 518 NAAFDSVIKKYKHGVLFFIKRKWLAWSLLACSIVLLIVLMNTTKSSLVPDEDQGTVFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +          + + +     I+        + +       G   +    +  +K     
Sbjct: 578 STASGSSLATTNKIMTNIEQRINQIPQLQSYSKVSGYGLLAGQGSSFGMFILKLKHWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    I  +  + I
Sbjct: 638 PDKEDNVQAVIGQVYGRTADIKDATIFAIAPAMI 671



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 50/461 (10%), Positives = 143/461 (31%), Gaps = 14/461 (3%)

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
            V++         +    +  +     I  +  ++ + +T T    A I +      D +
Sbjct: 43  TVMVSTTYFGANAETMQKSVVAPLEEAINGVEDMTYMTSTATNSGTATITIYFQQGTDPD 102

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +         ++    +   +                T+++    L+   G     F   
Sbjct: 103 MAAVNVQNRVSKATGQLPAEVTQVGVTTSKRQ-----TSMLQIFSLYSPDGSYDENFLCN 157

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
                L      IS V  +M+    Y     +  + ++++ LIP  +             
Sbjct: 158 YISINLKPEILRISGVGELMVMGGDYSMRIWMKPDVMAQYKLIPSDVTSVLAEQNIESAT 217

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            S+  +               +  +    + + +    ++  ++   +     +      
Sbjct: 218 GSLGENSDETYQYTMKYSGRLLTPEEFGDIVIRSTEDGEVLKLKEIADIELGKESYAYIG 277

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRK 668
                  +            T V   +   + E           +     +  L   I +
Sbjct: 278 QTNGKPGISCMVFQTAGSNATEVNNKIDAFLEEASKDFPKGIEVVKLMSTNDFLYASIHE 337

Query: 669 GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +  +I + I +++ +++        L  +  +++ +  T  F  + G   NL  + A++
Sbjct: 338 VVKTLIEAIILVILVVYVFLQDIRSTLIPLVAIVVSLIGTFAFMTVAGFSINLITLFALV 397

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            +IG  V+D +VV + ++    +   S     +   ++       V TS+      +P++
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASM--DAMKGLTSAIVSTSLVFMGVFIPVS 455

Query: 788 VWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G+       F + MA  + ++  +++ ++  +   +  
Sbjct: 456 FMSGTSGTFYTQFGLTMAAAVGISTVNALTLSPALCAILLK 496



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/410 (9%), Positives = 108/410 (26%), Gaps = 27/410 (6%)

Query: 440  EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
            +   +      ++     + Y    D     + A       G G      +         
Sbjct: 632  KHWDERPDKEDNVQAVIGQVYGRTADIKDATIFAIAPAMIPGYGMGNALEMHTQDKAGGD 691

Query: 500  MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
            + T  +  +  +  +    ++ +       ++      +     +         +     
Sbjct: 692  LTTFFNTTQQYLAALRERPEIATAYSTFDIKYPQWRVDVDAAKCKRAGITPDAVLSTLSG 751

Query: 560  SICLLFTHGLNY-----------------GIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                 +   +N                           + +       LS   +  +   
Sbjct: 752  YYGGQYVSNINRFSKVYKVMIQSDPKYRLDEASLNNTFVRMSNGEMAPLSQFITLTKVYG 811

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
               ++  N                   A   V E     + +         T     + +
Sbjct: 812  AESLARFNMYNSIAVNAVPANGYSSGDAIKAVKETAATSLPKGYGYDFGSITREENQQSN 871

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
              +I  GI  ++I  I   +Y      +      I ++ + +  +  F    G+E N+  
Sbjct: 872  TTIIIFGICILMIYLILSALY----ESFLVPFAVILSVPMGLMGSFLFAKFMGLENNIYL 927

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ LIG      +++ +      +   + +S       +    L   + T++     
Sbjct: 928  QTGLIMLIGLLAKTAILLTE---YATQRRLSGMSLTSAALSAAKVRLRPILMTALTMIFG 984

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +LP+ V    G +   S       G+++   + +FI   + +     + K
Sbjct: 985  LLPLIVSNGVGANGNRSLGTGAVGGMLIGTLALLFIVPCLFITFQYLQEK 1034


>gi|284922069|emb|CBG35148.1| multidrug resistance protein [Escherichia coli 042]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|221201418|ref|ZP_03574457.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Burkholderia multivorans CGD2M]
 gi|221208026|ref|ZP_03581032.1| multidrug resistance protein MdtC [Burkholderia multivorans CGD2]
 gi|221172211|gb|EEE04652.1| multidrug resistance protein MdtC [Burkholderia multivorans CGD2]
 gi|221178686|gb|EEE11094.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Burkholderia multivorans CGD2M]
          Length = 1102

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/583 (12%), Positives = 156/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGLFAFVKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVTEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +                +   +   Q
Sbjct: 116 RADLPAALKSNPTYRKVNPADSPIMI-VSLTSDTASPARLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VTVSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                 +   +  + +  +
Sbjct: 217 --KGAIEFGPQHYQLYTNDQASQASQYRDLVVAYRNGAGVRLSDLSEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIDTIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++  +     +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLPERHDAREEGRFARFLERCFARMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   +L  +     +  +   Y I  KG     
Sbjct: 515 RGYERSLSWALSRPLLILLILFATIGLNVYLYVIVPKGFFPQQ 557



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +S + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAVSLVVMVVFLFLR-NWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---ARHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+ + S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLAVSLTVTP 483



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 93/215 (43%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + +I    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      + +    S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRNH--GKSSFDAIREACLLRFRPIMMTTMAALLGALPLAFGSADGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++++   +++    + L++   R
Sbjct: 1047 LRAPLGIAIAGGLIMSQVLTLYTTPVVYLYMDRLR 1081


>gi|222055860|ref|YP_002538222.1| acriflavin resistance protein [Geobacter sp. FRC-32]
 gi|221565149|gb|ACM21121.1| acriflavin resistance protein [Geobacter sp. FRC-32]
          Length = 1038

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/587 (10%), Positives = 162/587 (27%), Gaps = 44/587 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +      ++   +   GL            ++  P                   +   L 
Sbjct: 9   KRPVMTSLIMLAVMVFGLFA-----YRLLPVNDLPRIDYPT-----------IQVTANLS 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + +   +    +   S +        +  Q  + I L F   R  +  A  V   +
Sbjct: 53  GASPETMASAVATPLERQFSTISGLDSMSSTNGQGVSIIVLKFDLDRDIDAAALDVQAAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                +L  D               +++    +   +   A+  +         +I +  
Sbjct: 113 SKAARQLPQDMPNPPSFQKVNPADQAVLYLALSSQTLPLSAV--NEYADTIIAPRISMIS 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q   +      +  + DP+ +  L     +++      N +             +  
Sbjct: 171 GVAQVQVNGSQKYAVRVQLDPNAITSLKIGLDEVAAALDRWNVNLPTGGLQGERQAFTIQ 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +                         +V    +            D++        
Sbjct: 231 ATGQL----------------YNAEAFKSLIVAYRGNSPVRLSDIATVSDSVENDKVAAW 274

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                 +          +   +    +++        R+         V          S
Sbjct: 275 YNTKGKSTRAIILAVQRQPGTNTIEVVDSIKKQIPSFRSQIPASVQLDVFFDRTVTIRES 334

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +  K T  +   LV++V+F+ +      ++   ++ L++I T A +   G ++   ++ 
Sbjct: 335 VADVKFTLLLTIALVILVIFLFLRNLSATVIPSLALPLSIIGTFAAMYAFGFSVNNITLM 394

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + L +G  VD  I++ E I       ++   +   G      TI    I+ +   + + 
Sbjct: 395 ALTLSVGFVVDDAIVMLENIVRHMEHGENPHEAALRGSREIGFTIISMTISLVAVFIPVL 454

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----KKMKSIDINPLSRF 531
           F  G     +  FA+T+ ++ILIS   ++S+   +    ++     +  K  +       
Sbjct: 455 FMSGMLGRMLHEFAVTITVAILISGLVSLSLTPMLCSRFLKPPAEVRHGKFYNFMERFFQ 514

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            ++           R+    + I   + +I +     +  G+     
Sbjct: 515 GMLDLYRLTLSRVLRYRRTTMLITLVMTAITIWLFMIMPMGLLPSDD 561



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 87/235 (37%), Gaps = 8/235 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ--TRVLEMVKKKITEIVP 647
           D++ V  ++E+ ++           +  ++ +Q QPG +  +    + + +    ++I  
Sbjct: 258 DIATVSDSVENDKVAAWYNTKGKSTRAIILAVQRQPGTNTIEVVDSIKKQIPSFRSQIPA 317

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +         I   +       ++  A+ +L+           +     L L I  T
Sbjct: 318 SVQLDVFFDRTVTIRESVADVKFTLLLTIALVILVIFLFLRNLSATVIPSLALPLSIIGT 377

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   N   + A+   +G+ V+D +V+ + +   ++      +  +   +   E
Sbjct: 378 FAAMYAFGFSVNNITLMALTLSVGFVVDDAIVMLENI---VRHMEHGENPHEAALRGSRE 434

Query: 768 TLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
                +  +++     +  + + G  G ++  FA+ +   I+++   S+ +   +
Sbjct: 435 IGFTIISMTISLVAVFIPVLFMSGMLGRMLHEFAVTITVAILISGLVSLSLTPML 489



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 91/298 (30%), Gaps = 11/298 (3%)

Query: 534  IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
              +        +R      S   +   + +               + +   A + V LS 
Sbjct: 731  RIEDTLFSAYGSRQVSTIYS-PTNQYRVIMELAPQYQSDPAALSMLYVRSNAGQLVPLSS 789

Query: 594  VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            + +    +    ++             ++       A   V    K     I        
Sbjct: 790  LATLTTGVGPLSVNHLGQITSVTVSFNIKPGTPLGDAVAAVENEAKSLPASITTGFQGTA 849

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
                       L+    + VI   + +L        +   L  ++ L       L    +
Sbjct: 850  QVYQASTKGLALLLIMAILVIYIVLGIL-----YESYIHPLTILSGLPSAGFGALITLLI 904

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            FG + NL +   ++ L+G    + +++ D   +        +S  D I +         +
Sbjct: 905  FGKDLNLYSFVGIIMLVGIVKKNAIMMIDFALE--AQRNQGLSPLDAIYEGCLVRFRPIM 962

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             T+MAA +  LP+A+    G        + +  G++V+   ++FI   +  ++  ++ 
Sbjct: 963  MTTMAALMGTLPIAMGFGAGAESRRPLGLAVVGGLLVSQLLTLFITPVVYYYMDRFQQ 1020


>gi|191168867|ref|ZP_03030640.1| multidrug resistance protein MdtB [Escherichia coli B7A]
 gi|209919539|ref|YP_002293623.1| multidrug efflux system subunit MdtB [Escherichia coli SE11]
 gi|256017753|ref|ZP_05431618.1| multidrug efflux system subunit MdtB [Shigella sp. D9]
 gi|260868784|ref|YP_003235186.1| multidrug efflux system, subunit B [Escherichia coli O111:H- str.
           11128]
 gi|300917091|ref|ZP_07133782.1| putative ATP synthase F0, A subunit [Escherichia coli MS 115-1]
 gi|332278771|ref|ZP_08391184.1| multidrug resistance protein mdtB [Shigella sp. D9]
 gi|226700674|sp|B6HYS0|MDTB_ECOSE RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|190901106|gb|EDV60882.1| multidrug resistance protein MdtB [Escherichia coli B7A]
 gi|209912798|dbj|BAG77872.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|257765140|dbj|BAI36635.1| multidrug efflux system, subunit B [Escherichia coli O111:H- str.
           11128]
 gi|300415658|gb|EFJ98968.1| putative ATP synthase F0, A subunit [Escherichia coli MS 115-1]
 gi|323172667|gb|EFZ58301.1| multidrug resistance protein mdtB [Escherichia coli LT-68]
 gi|323177028|gb|EFZ62618.1| multidrug resistance protein mdtB [Escherichia coli 1180]
 gi|332101123|gb|EGJ04469.1| multidrug resistance protein mdtB [Shigella sp. D9]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|319794793|ref|YP_004156433.1| acriflavin resistance protein [Variovorax paradoxus EPS]
 gi|315597256|gb|ADU38322.1| acriflavin resistance protein [Variovorax paradoxus EPS]
          Length = 1044

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/552 (12%), Positives = 159/552 (28%), Gaps = 25/552 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++      L       +P+                   +     
Sbjct: 10  RPVATSLLMVAIVLAGMVGFRFLPLSALPQVDYPTIQ--------------VQTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + ++  +    +     +        +     + ITL F+  +  +    +V   +   
Sbjct: 56  PEVMSNTVTAPLERQFGQMSGLDRMSSTSAAGVSIITLQFSLGQTLDVAEQEVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     +        + VL+   I        E    +  +   +I        
Sbjct: 116 GSLLPADLPAPPVYAKVNPADAPVLT-LAITSDTLPLTEVQNLVNTRLAQKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L         +       N++     F       +  +   
Sbjct: 175 VSLSGGQRPAVRIQANTQALAANGIGLDTLRTAISAANSNGAKGSFDGPKRAYTINSNDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +   + ++              V  S +      +        G+     L    
Sbjct: 235 LLTVEDYKNLIVSYKNGAPIRMVDVAQVVNSAENTQLGAWAGTKTAEGGESAEPKLT--- 291

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T+         L+AG        V          S    
Sbjct: 292 ----PAIILNVQRQPGANVIATVNAIKKQLPELQAGFPAGLKIEVLSDRTAGIRASVQHV 347

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F  +   +  ++A  ++ +++I TL L+ LLG +L   S+  + +
Sbjct: 348 EMELVLAVVLVVLVIFAFLGSLRATVIASIAVPISLIGTLGLMYLLGYSLNNLSLMALTI 407

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +    +   G ++   TI    ++ +   + L F G 
Sbjct: 408 ATGFVVDDAIVMIENIARYIEEGEKPLQAAFKGATQIGFTIISLTVSLIAVLIPLLFMGD 467

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++V  M    ++++  K                  
Sbjct: 468 VVGRLFREFAVTLAITILISAVVSLTLVPMMSARWLKHEPKKEPGGTGFGARAQRFFDGV 527

Query: 540 IQFMRARFWGVG 551
           +         V 
Sbjct: 528 MVRYDRSLHWVI 539



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 54/149 (36%), Gaps = 6/149 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    + A   + + +  TLG   L G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 364 AFLGSLRATVIASIAVPISLIGTLGLMYLLGYSLNNLSLMALTIATGFVVDDAIVMIENI 423

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +             K   +     +  +++    ++P+   G   G +   FA+ +
Sbjct: 424 ---ARYIEEGEKPLQAAFKGATQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFREFAVTL 480

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A  I+++A  S+ +   +         K 
Sbjct: 481 AITILISAVVSLTLVPMMSARWLKHEPKK 509



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 91/260 (35%), Gaps = 6/260 (2%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
              G+         +        +   + +  +       Q     +     L +     V
Sbjct: 771  RPGMVNTPQTLGQLNLIAGSGTATPLAAIADISEQPAPLQITHVAQYPASTLNFDTAPGV 830

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +  + ++ ++    EI    ++  T +         +   +  ++ + + + I + + ++
Sbjct: 831  SLGQSVDAIRAAAKEIGMPGSVTMTFLGASGAYERSLSNQLWLILAAVVCVYIVLGVLYE 890

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  ++TL       L    L G +  +  +  ++ LIG    + +++ D      
Sbjct: 891  SYVHPLTILSTLPSAGVGALLALMLTGNDLGVIGIIGIILLIGIVKKNAIMMID--FAID 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
               T  +S R+ I ++        + T++AA  + +P+ +    G  +     + +  G+
Sbjct: 949  AERTGGLSPREAIHQAALLRFRPILMTTLAALFAAVPLMLSFGEGAELRRPLGLAIFGGL 1008

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +V+   ++F    I L    
Sbjct: 1009 IVSQLLTLFTTPVIYLAFDR 1028


>gi|320179495|gb|EFW54450.1| Multidrug transporter MdtB [Shigella boydii ATCC 9905]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPKVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|301164283|emb|CBW23841.1| putative multidrug resistance/siderophore transport related,
           membrane protein [Bacteroides fragilis 638R]
          Length = 1068

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 74/694 (10%), Positives = 180/694 (25%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFTLPVEQYPDIAPPTIM---------VSTSYFGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S        IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTHMTSSATNAGTVSITVYFKQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           +  I      +I       
Sbjct: 115 ATGQLPSEVNQVGVTTSKRQTSILQMFSLHSPDDSYDEAFLANYISINLKPEILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        L     P  + Q     + +S      N       FG            
Sbjct: 175 DMMIMG-GDYSLRIWMKPDVMAQYRLIPSDVSTVLAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++                   +    +       +         I           
Sbjct: 234 YKGRRI----------------TPEEFGEIVIRSTDDGQVLKLKDIATIELGQESYAYSG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +               R              +      S   
Sbjct: 278 TTDGHNGVSCMLFQTAGSNATEVNNQINRFLEEARKELPQGVELTQLMSSNDFLYASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLLEAILLVILVVYVFLQDIRSTLIPLVGIIVSLIGTFAFMAIAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASVDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 SGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALLLKPYINEDGTQKQNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        I + F++ R+    + I      + L+ T   +   D   G+    +
Sbjct: 518 NAAFDVVVEKYKGIVLFFIKRRWLTGSLLIASIALLVVLMNTTKTSLVPDEDQGVVFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +           ++       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLRTTDDVMKRIEERMEQIPQVKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    +  +    I
Sbjct: 638 PGKEDDVQAVIGQVYGRTADIKDASVFAISPGMI 671



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 87/201 (43%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +    R LE  +K++ + V L+ + ++         E+++  +  +++  + + +++   
Sbjct: 301 NNQINRFLEEARKELPQGVELTQLMSSNDFLYASIHEVVKTLLEAILLVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  +I+ +  T  F A+ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 359 -DIRSTLIPLVGIIVSLIGTFAFMAIAGFSINLITLFALVLVIGTVVDDAIVVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++   G+       F + MA  
Sbjct: 418 FDVGYKSSYMASV--DAMKGISNAVITSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +   +  
Sbjct: 476 VGISAVNALTLSPALCALLLK 496



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 65/201 (32%), Gaps = 11/201 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            + ++                  G     E  + G   +I     ++IY+    +   +  
Sbjct: 838  DAIRAVQETASTSLPKGYGYDYGGITREENQQSGTTAIIFGICFLMIYLILSALYESFLI 897

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + ++   +  +  F  +FG+E N+     ++ LIG      +++     +      
Sbjct: 898  PFAVLLSVPCGLMGSFLFARMFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERR 953

Query: 753  T-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +        +    L   + T++     +LP+ V    G +   S       G+V+ 
Sbjct: 954  KAGMGLIASALSAAKARLRPILMTALTMIFGLLPLMVASGVGANGNRSLGTGAVGGMVIG 1013

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
              + +FI   + +     + +
Sbjct: 1014 TLALLFIVPSLFIAFQWLQER 1034


>gi|299145132|ref|ZP_07038200.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_23]
 gi|298515623|gb|EFI39504.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_23]
          Length = 1059

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/696 (10%), Positives = 175/696 (25%), Gaps = 53/696 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P              ++     
Sbjct: 8   KRPVMAISISVLILAIGLISLF-----TLPVEQYPDIAPPT-----------VYVTASYT 51

Query: 62  EDDFVNGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             D     +      L   +        I   +       I + F      +  A  V  
Sbjct: 52  GADA-EAVMNSVIMPLEESINGVEDMMYISSSASNAGLAIIQVYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   + +               +  +    I QI   
Sbjct: 111 RVAKAQGLLPAEVTKVGVSTMKRQTSFLQIGALVCTDGRYDQTFLANYLDINVIPQIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     +        +     P R+ Q     + ++      N        G        
Sbjct: 171 EGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDITAVLGEQNIEAPTGSLGESSQNVFQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                        +    +                 +       
Sbjct: 230 ----------------FTMKYRGRLKSVEEFQNTVVRSREDGSILRLKDVAEVELGTMTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                + +      +    A  +     +        +          +    +      
Sbjct: 274 SFRSEMDSQPAVLYMIFQTAGSNATAVNKEITAQIERMEKNLPEGTEFVTMMSSNDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + ++
Sbjct: 334 SIHNVVETLIIAIILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG  VD  I+V E ++ +      S + +           I       +   + 
Sbjct: 394 FALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIVSCTCVFMAVFIP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL----- 528
           + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +       
Sbjct: 454 VTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVRA 513

Query: 529 -----SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L      + F     W V  S+  ++  +  L +      +  +    + V
Sbjct: 514 AYNASFNAVLGKYKRGVMFFIRHRWMVWTSLAVAVALLVYLMSTTKTGLVPQEDQGVIMV 573

Query: 584 LANRPVDLS-VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
             +     +    + +       +           +       G   +   ++  +K   
Sbjct: 574 NVSISPGSTLEETTKVMDRLENILKDTPEIEHYARVAGYGLISGQGTSYGTIIIRLKDWS 633

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                  +            + L    +     + I
Sbjct: 634 ERKGKEHSSDAVVSRLNAQFQSLKEAQVFSFQPAMI 669



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 359 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 419 DAGYK--SPYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/248 (10%), Positives = 66/248 (26%), Gaps = 5/248 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                   +         ++      Y +D +    + V     +        L+ +   
Sbjct: 750 YCGGAYISNYNQYGKVYRVMMQASPEYRLDEQALNNMFVRNGTEMAPVSQFVTLKQVLGP 809

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           + + +                  S    +V+E V  +                       
Sbjct: 810 ETANRFNLYSTITANVNPADGYSSGEVQKVIEEVAAQSLPAGYGYEYGGMAREEASSGGA 869

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                I  + +  I  LI   +   +      I ++   +  +  F    G+E N+    
Sbjct: 870 QTVF-IYAICVFLIY-LILACLYESFLVPFAVIFSVPFGLMGSFLFAKFLGLENNIYLQT 927

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            V+ LIG      +++ +     ++     +   +    +    L   + T +     +L
Sbjct: 928 GVIMLIGLLAKTAILITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGML 984

Query: 785 PMAVWGGS 792
           P+    G+
Sbjct: 985 PLMFSSGA 992


>gi|227503514|ref|ZP_03933563.1| preprotein translocase subunit SecD [Corynebacterium accolens ATCC
           49725]
 gi|227076017|gb|EEI13980.1| preprotein translocase subunit SecD [Corynebacterium accolens ATCC
           49725]
          Length = 627

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 113/581 (19%), Positives = 216/581 (37%), Gaps = 67/581 (11%)

Query: 1   MRNNP--W-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           M+N+   W    L      + ++ AL            P         LG+DL+GG+ + 
Sbjct: 1   MKNSNRQWPKRALALFGLIVVVIYAL--VFFTGNRQATP--------KLGIDLQGGTRVT 50

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR--FKENIADKV 115
           L    +D     L+   + L   +   G+    +    N + ++         + +    
Sbjct: 51  LAPQGEDPTQDQLRQARNILEQRVNGMGVSGSEVVINGNTLVITVPGEDASQAQAVGQTS 110

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
            L+ + V      D +K            +     + D+      + +  + +Q     G
Sbjct: 111 QLYFRPVAQPSAPDLEKLDKELEDMANRWVKYGVLDKDEANKKLEDVTNAVAQQEAQAEG 170

Query: 176 ---------------------ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
                                  E T +R     +L++     DP+              
Sbjct: 171 KEPKDVKAPKVSAKPLDEPSNSIEQTERRDEVTEMLLEDRQSDDPTTQAAASSLLTCQGS 230

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLV-----------EDKVEISGIHLNGATANF-- 261
               P                  G  Y++           ED   ++G  ++  +     
Sbjct: 231 A--DPLAGADDPSKPFVTCDYDSGTPYVLEPAPLLNGVEDEDGTRLTGNEIDTNSPINGG 288

Query: 262 -----DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP-SG 315
                                G++ + ++TR+++   +A+ LD  V++APVI  A P   
Sbjct: 289 LNPQSGQMEISFSFKTGNGPNGSQTWADLTREHLNDQIAITLDSAVISAPVIQGATPYGS 348

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKL------NIVEERNVGADLGSDSIYKGTCAIV 369
              I+G+F+ E A  LA  LR G+LP+              ++   LG  ++  G  A +
Sbjct: 349 ATSINGDFSQEEANNLANNLRYGALPLSFAGENGEPGGTVESIPPTLGKAALEAGLWAGL 408

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIG 425
           AGL+L++L+ +  +     V+   +  + +LT   + LL    G +L L  IAG+V+G+G
Sbjct: 409 AGLILVILYSLYYFRALSGVSVIFLLGSGLLTYGAIVLLGRWIGYSLDLSGIAGLVIGVG 468

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
              DS ++  ERI++E  + ++   +    + R+ STI   N   LI +V+++F   G V
Sbjct: 469 ATADSFVVYYERIKDELLEGRTFRSATQKAWERSRSTIVTGNAVTLIGSVIVYFLAIGEV 528

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +GFA T+GL+ +  +  +  ++  +M  I R        +N
Sbjct: 529 KGFAFTLGLTTIFDLVVSFLVMAPLMQIIGRRPAAAKPSMN 569



 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 76/241 (31%), Gaps = 8/241 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D   +  +   +    I      G    +     Q   +     +               
Sbjct: 324 DQIAITLDSAVISAPVIQGATPYGSATSINGDFSQEEANNLANNLRYGALPLSFAGENGE 383

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                E + P + +  +  G+   +   I +++Y    F+    +  I  L+     T G
Sbjct: 384 PGGTVESIPPTLGKAALEAGLWAGLAGLILVILYSLYYFRALSGVSVIF-LLGSGLLTYG 442

Query: 710 FFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L G       +L+ +A ++  +G + +  VV Y+R++  +       +FR    K+ 
Sbjct: 443 AIVLLGRWIGYSLDLSGIAGLVIGVGATADSFVVYYERIKDELLE---GRTFRSATQKAW 499

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +    V  +    I  + +       +  FA  +    +     S  + AP++  I  
Sbjct: 500 ERSRSTIVTGNAVTLIGSVIVYFLAIGEVKGFAFTLGLTTIFDLVVSFLVMAPLMQIIGR 559

Query: 826 W 826
            
Sbjct: 560 R 560


>gi|39935803|ref|NP_948079.1| RND multidrug efflux transporter MexD [Rhodopseudomonas palustris
           CGA009]
 gi|39649656|emb|CAE28178.1| RND multidrug efflux transporter MexD [Rhodopseudomonas palustris
           CGA009]
          Length = 1043

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/600 (14%), Positives = 167/600 (27%), Gaps = 43/600 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC  G+L      LP   + ++P   P               + +    
Sbjct: 8   RPIFAWVVAIFICLAGVLA-----LPFLPVAQYPIIAPP-------------SISIATVY 49

Query: 63  DDFVNGF----LQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTL 117
                      +    +E  +          +     + +I  SF            V  
Sbjct: 50  PGASTQNLYYGVTRLIEEELNGAAGILSYESTSDTTGEVEIVASFQPGTDIAQATVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ +  +L    +K  +  T      +              I       R  + ++   
Sbjct: 110 RIKRIEPRLPEAVRKEGIAITEASSAILQFVTLTSSDNSLDEIGLGDVATRYVLPELRRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP +L  L  T   +       N      + GV+      
Sbjct: 170 RGVGRVRLF-STERAMRIWLDPDKLLGLGLTAQDVDSAIAAQNAPVASGLLGVQPTPVQQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q +V  K ++                 +    +                 +       
Sbjct: 229 RLQNMVLVKGQL-------------DSLEEFGDIVLRANPNGSTVRLADVARLEVGGLAY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T E      A L A   P     V          
Sbjct: 276 SFSTRLDGRPAAAVAVQLAPSGNALATSEAVKARMAELAAFFPPGVKYEVSYDVTPVIAA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    LV +V+F+ +   ++ ++    + + ++ T A+L  LG ++ + ++
Sbjct: 336 SVKKVLLTLAEAVVLVFLVMFLFLQNIRYTMIPTIVVPIALLGTCAVLLGLGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +      +  S   + +    +    +    +  +   V 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMSEEGLSPRAATEKAMEQITGAVIGITLVLMAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
           + FF G      + F+  M +SI  S F A+S+  A+   +     K            F
Sbjct: 456 MAFFPGSVGIMYQQFSAAMVVSIGFSAFLALSLTPALCATLLKPVEKGHGHATRGFFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
               D     +  A  W V     F +  + LL      +     G + +       VD+
Sbjct: 516 NRRLDRATRSYGNATRWMVARGGRFMLLYVVLLAVLSFAFWRLPGGFVPIDDQGFVMVDV 575



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L+ V            S +        +       G+++A +  ++    ++    P 
Sbjct: 260 VRLADVARLEVGGLAYSFSTRLDGRPAAAVAVQLAPSGNALATSEAVKARMAELAAFFPP 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                       +    ++K ++ +  + + + + +++  +   + +     + + +  T
Sbjct: 320 GVKYEVSYDVTPVIAASVKKVLLTLAEAVVLVFLVMFLFLQNIRYTMIPTIVVPIALLGT 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  +  ++  IG  V+D +VV + +     +    +S R   +K++ +
Sbjct: 380 CAVLLGLGFSINVLTMFGMVLAIGILVDDAIVVVENV--ERIMSEEGLSPRAATEKAMEQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GSV      F+  M   I  +A  ++ +   +   + 
Sbjct: 438 ITGAVIGITLVLMAVFVPMAFFPGSVGIMYQQFSAAMVVSIGFSAFLALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 85/253 (33%), Gaps = 9/253 (3%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                N     K    L           V  S+   +       Q    +    VRL   P
Sbjct: 767  VVQANEDKRVKPEDLLSYSVRNNAGEMVPFSSFARVAWVVGPTQVVGFDGYPSVRLTGNP 826

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYI 684
                +    +  +++ +  +            G  +  +L   + +  + +S + + + +
Sbjct: 827  APGYSSGDAIAEMERLMRTLPGGF---GYAWTGQSLQEKLAGSQAVFLLGLSILFVFLCL 883

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
               ++ W      +  + L +  ++    L G+  ++     ++T+IG S  + +++ + 
Sbjct: 884  AALYESWSIPFAVMLAVPLGLVGSVAAAMLRGLPNDVYLTVGIVTIIGLSAKNAILIIEF 943

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
             +    L        +    +        + TS+A  + V+P+ +  G+   S    +  
Sbjct: 944  AKD---LRAHGTPLVEATITAAELRFRPIIMTSLAFILGVVPLVIASGASAASQQ-ALGT 999

Query: 804  GIVVAASSSIFIA 816
            G++    ++  +A
Sbjct: 1000 GVLGGMITATVLA 1012


>gi|188574861|ref|YP_001911790.1| acriflavin resistance protein D [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188519313|gb|ACD57258.1| acriflavin resistance protein D [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 1082

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/564 (10%), Positives = 157/564 (27%), Gaps = 40/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +  +G+L        Q  +   P     + +                 
Sbjct: 9   RRPIATSLLMAGVLLLGIL-----GYRQLPVSALPEIDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R     +  V   ++ 
Sbjct: 55  NATTMASLVTTPLERQFGQISGLKMMTSDSSAGLSTIILQFSMERDINIASQDVQAAIRQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 115 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDSLPLREVNRYADAILAQRLSQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  E                               R        N+   +       
Sbjct: 232 QLTDAAE--------------------YRQTIISYKDGRPVRLADVANVVDGVENDQLAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   L++         V          S   
Sbjct: 272 WADNKPAVLLEIRRQPSANIVQTVEQIRSILPQLQSVLPADVHLEVLSDRTETIRASVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T A+++  G +L   S+  +V
Sbjct: 332 VKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFAVMAFAGMSLDNLSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ SM  ++++   M  ++++   +   +             +
Sbjct: 452 GVTGRLFHEFAWVLSIAVVTSMLVSLTLTPMMCAYLLKPDALPEGEDAHERATAAGKRNL 511

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
             + +      +   +     ++ 
Sbjct: 512 WTRTVGIYERSLDWVLAHQPLTLA 535



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 91/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++ +      +      +   +        +    V L+ +   S 
Sbjct: 230 NDQLTDAAEYRQTIISYKDGRPVRLADVANVVDGVENDQLAAWADNKPAVLLEIRRQPSA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I+ +  +I++
Sbjct: 290 NIVQTVEQIRSILPQLQSVLPADVHLEVLSDRTETIRASVHEVKFTLVLTIALVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   +     + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATIIPSVAVPLSLAGTFAVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S  +  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V +   S+ +  
Sbjct: 466 SIAVVTSMLVSLTLTP 481



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 89/234 (38%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L   ++ +        ++   V + +      + ++ +  ++K   E+   + +    
Sbjct: 823  AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKARQELKIPTQVHAQF 882

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +             I  ++ S + + I + + ++ +   L  I+TL       L    + 
Sbjct: 883  VGKAAEFTGSQTDIIWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMC 942

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D     +       +  D I ++        + 
Sbjct: 943  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGANAHDAIRRACLLRFRPIMM 999

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA +  LP+A+    G  +     I +  G++++   +++    I L++  
Sbjct: 1000 TTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1053


>gi|325497896|gb|EGC95755.1| multidrug efflux system subunit MdtB [Escherichia fergusonii
           ECD227]
          Length = 1023

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 2   RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 47

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 48  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 107

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 108 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 166

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 167 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 206

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 207 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 266

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 267 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 326

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 327 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 386

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 387 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 446

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 447 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 506

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 507 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 566

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 567 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 618



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 330 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 388

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 389 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 445

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 446 DIVGRLFREFAITLAVAILISAVVSLTLTP 475


>gi|149369873|ref|ZP_01889724.1| putative AcrB/AcrD family RND transport protein [unidentified
           eubacterium SCB49]
 gi|149356364|gb|EDM44920.1| putative AcrB/AcrD family RND transport protein [unidentified
           eubacterium SCB49]
          Length = 1047

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/521 (10%), Positives = 141/521 (27%), Gaps = 43/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++           ++ +P   P               + +    
Sbjct: 8   RPVLSTVISIIIVMLGVISI-----TSLPIEEYPDIAPPT-------------IKVTASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  + +     +   +   EG+   +         +IT+ F      +  A  V  
Sbjct: 50  TGANAETVLESVIIPIEEQINGVEGMTYITSTASNTGTAEITVYFDQEMDADIAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  ++T   +  +++      +     A      +    I  +   
Sbjct: 110 RVARATPLLPQEVTQTGVITQKVETSALMFVSMYSESENYDATFIQNYLKINVIPAMQRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                     +    +     P +L       + +S      N        G     + +
Sbjct: 170 SGVGDVSVFSQQDYAMRVWLKPEKLAAYNLIPSDISAVLAEQNLEAAAGSLG---QNNGE 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +                            +                 I       
Sbjct: 227 SFSYTLTYSGRFKDEAQYSD-------------IVIKALGNGEFLRLKDVATIELDAQSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +    I+        ++          V          
Sbjct: 274 AANAMSLGHPAVFMGIFQTKGSNAKEIIDNIKTTLTTVKKDLPEGLDIFVPYDTSLFLNA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   ++ +++I T   L++ G ++ L ++
Sbjct: 334 SIEKVIHTLLEAFLLVFLVVFIFLQDFRSTLIPAIAVPVSIIGTFFFLNVFGYSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +  +  +S   +     +     I    +      + 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHAKLDEGEKSAKKATLTAMNEISGAIISITLVMAAVFIP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F  G        F +T+ ++ILIS   A+++  A+   +
Sbjct: 454 VTFVTGPTGVFYEQFGVTLIIAILISAVNALTLSPALCALL 494



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 72/257 (28%), Gaps = 9/257 (3%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                 + V  +      + +        G  S   F+   +  +      G S      +
Sbjct: 783  SDLNSMYVRTDTGEMTPITQFVNLKRVYGPQSVTRFNLLNSTSITGATNDGYSTGDAIRV 842

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
               +                        +     I+ ++       +       +     
Sbjct: 843  IEEEVAKLPSNYTVAYSGLTREEVSAGNQTTFIFILSILFVY---FLLSAQYESYLLPFA 899

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             + +L   +         FG+E N+    A++ LIG    + +++ +     ++      
Sbjct: 900  VVLSLPFGVFGAYISTKFFGLENNIYFQIALIMLIGLLAKNAILIVEFA---LQRRKGGE 956

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
            S  D         L   + TS A  + ++P+ +    G     S     A G+++     
Sbjct: 957  SIVDAAINGAKSRLRPILMTSFAFILGLMPLVLAKGVGSEGNNSIGTGAAGGMLIGTVLG 1016

Query: 813  IFIAAPILLFIYDWRAK 829
            +F+   + +     + K
Sbjct: 1017 VFVIPILFILFQWLQEK 1033



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 85/237 (35%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V +     Q    +  +      F+   Q +  ++      ++     + + +P     
Sbjct: 262 DVATIELDAQSYAANAMSLGHPAVFMGIFQTKGSNAKEIIDNIKTTLTTVKKDLPEGLDI 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                        I K I  ++ + + + + ++I    +   L     + + I  T  F 
Sbjct: 322 FVPYDTSLFLNASIEKVIHTLLEAFLLVFLVVFIFLQDFRSTLIPAIAVPVSIIGTFFFL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +FG   NL  + A++  IG  V+D +VV + +   +       S +     ++NE  G 
Sbjct: 382 NVFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHAKLDEGEK--SAKKATLTAMNEISGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  ++      +P+    G        F + +   I+++A +++ ++  +   +  
Sbjct: 440 IISITLVMAAVFIPVTFVTGPTGVFYEQFGVTLIIAILISAVNALTLSPALCALLLK 496


>gi|300978921|ref|ZP_07174434.1| putative ATP synthase F0, A subunit [Escherichia coli MS 45-1]
 gi|300409554|gb|EFJ93092.1| putative ATP synthase F0, A subunit [Escherichia coli MS 45-1]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFIGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFIG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|300902279|ref|ZP_07120276.1| putative ATP synthase F0, A subunit [Escherichia coli MS 84-1]
 gi|301304486|ref|ZP_07210597.1| putative ATP synthase F0, A subunit [Escherichia coli MS 124-1]
 gi|300405641|gb|EFJ89179.1| putative ATP synthase F0, A subunit [Escherichia coli MS 84-1]
 gi|300840212|gb|EFK67972.1| putative ATP synthase F0, A subunit [Escherichia coli MS 124-1]
 gi|315255413|gb|EFU35381.1| putative ATP synthase F0, A subunit [Escherichia coli MS 85-1]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVARKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|87301390|ref|ZP_01084231.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 5701]
 gi|87284358|gb|EAQ76311.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 5701]
          Length = 1089

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/583 (12%), Positives = 161/583 (27%), Gaps = 36/583 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   +I  +G++       P   ++  P+  P               + +  +
Sbjct: 9   KRPVLTTVCSILIVLVGMISI-----PVLAIENLPNIAPPL-------------IQVVAN 50

Query: 62  EDDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQ---IQNKITLSFADSRFKENIADKVT 116
                    ++   + +   +    G+   +        + I + F      +     V 
Sbjct: 51  YGGANAEVTEVAVTNPIEQQIDGSPGVSYIASNTTLTGNSTINVYFDQGTDIDIDQVNVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L    +   +         ++  Q         A   +  I      Q+  
Sbjct: 111 NRVTLAMPQLPQQVQATGVSVKQSTPSILLAYQVGSSDGQFDAPYLNGLIYSNLYYQLSR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                                DP++L     T  ++       N    G + G      +
Sbjct: 171 VPGVANVSLLGGSNPAFWLFLDPNKLTTNDITADQVLSAVSNQNFVAVGGLIGGPPAGGN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               Y ++               N         + +     G     E          + 
Sbjct: 231 QAFTYPLK----------VQNNGNLTSIDQLNKLILGKSPNGNLLRLEDVGRATYGFNSY 280

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G                   +     E    +     AG+ P     +         
Sbjct: 281 STAGVDKHNHPAIVVAVFQTPGSNALDVSEGVVKVMNAFAAGAPPGVTVGLIYNIGQFIQ 340

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +         +   LVL++LF+ +   +  +V   +I ++++ T+A +++ G ++   +
Sbjct: 341 SAVEGVIDALGLAIVLVLLILFLFLQDWRATIVPSLAIPISLVGTMAFVNVFGFSINQLT 400

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475
           + G+VL  GL VD  I+V E +            +            I  + +   +   
Sbjct: 401 LLGLVLATGLVVDDAIVVIEAVSVNLAAGMKPRQAAMECMGELIGALISTALVLMAVFVP 460

Query: 476 VLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           V F+ G  G   R FA+T+  ++ IS F A++    +   I+R  K       P     +
Sbjct: 461 VAFYPGSIGIIYRQFALTIAFAVGISAFNALTFSPMLSGLILRSSKPPPPRGWPWIVAGV 520

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
           +      +F     W   + ++  +     L      +   F 
Sbjct: 521 VVGLAFGRFNGVGGWTYVLGVVLGVIGGANLPWIFDRFNAFFD 563



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 65/145 (44%), Gaps = 7/145 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +     + + +  T+ F  +FG   N   +  ++   G  V+D +VV + +  N+
Sbjct: 367 DWRATIVPSLAIPISLVGTMAFVNVFGFSINQLTLLGLVLATGLVVDDAIVVIEAVSVNL 426

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
                 +  R    + + E +G  + T++      +P+A + GS   +   FA+ +AF +
Sbjct: 427 AA---GMKPRQAAMECMGELIGALISTALVLMAVFVPVAFYPGSIGIIYRQFALTIAFAV 483

Query: 806 VVAASSSIFIAAPILLFIYDWRAKN 830
            ++A +++   +P+L  +    +K 
Sbjct: 484 GISAFNAL-TFSPMLSGLILRSSKP 507



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 77/220 (35%), Gaps = 9/220 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                L R     G         + ++K        +            + +L       +
Sbjct: 858  NHYNLYRSIVIQGAEAIGKSSGQALEKIQEVFKAQNFNNIAYAFTGLAALQLSAGASSIL 917

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF---GIEFNLTAVAAVLTLI 730
            +     +++Y+ +  ++   +  +  L+      LG         I+ N+ A   ++TLI
Sbjct: 918  VFGFGILVVYLVLSAQYESYVTPVIILMTVPLAMLGALVFLAARSIDLNIYAQVGLVTLI 977

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
            G +  + +++ + + +  +      S  D    +    L   + T++AA     P+ V  
Sbjct: 978  GLAAKNAILIVE-VAE--QKLKAGSSATDAAIAAAESRLRPILMTAIAALAGFFPLVVAS 1034

Query: 791  GSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G+   S       +  G++VA   S+ +  P  +FI   R
Sbjct: 1035 GAGAHSQQALGSVIFGGLLVATVLSLGVVPPFYVFIKQIR 1074



 Score = 42.0 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 64/523 (12%), Positives = 148/523 (28%), Gaps = 43/523 (8%)

Query: 11   YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGL-DLRGGSHLVLEVDEDDFVNGF 69
              M+  +G ++              P         LG+  L+ G+ L         +   
Sbjct: 582  IVMLTLVGGIVVTGFAFSALPQAFIPD--EDQGYGLGIFQLQNGASLSQSQKMASQIAKV 639

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD-------KVTLFLQGV 122
            L    + + + +   G G       Q      F     +++          ++   L+ +
Sbjct: 640  LDEEEEIVGATVIS-GYGFNGGSPDQGAFFYGFKPLDERQSADQKAPAIIERLNTKLKTI 698

Query: 123  NSKLNVDPKKNLLVTTTEK-EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +S L +  +   +   + +   +   +  +        ++     + +++   G +    
Sbjct: 699  SSGLAIAAQPPPVPGFSSQGGFAFQFNDLSNGGFSFSELDD----LAKQVVAKGNATGFF 754

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
              L +  I      E    R    LGT        +       G  F     +       
Sbjct: 755  GSLYTQFIPSAPAFELKVDR--DALGTLDVDFKQAMTTIGILAGSNFANLTYQAGQVRNI 812

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             V+   +           +           +           + T   +     V+    
Sbjct: 813  YVQADAD-----------HRSTLEDVEGYYVRNRSGDLVPVSQFTSVELTSAPPVINHYN 861

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +  + VI  A   GK+       I+                           A L   + 
Sbjct: 862  LYRSIVIQGAEAIGKSSGQALEKIQEVFKAQNFNNIAYAF---------TGLAALQLSAG 912

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGL--VADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                     G++++ L +   Y  +    +   ++ L ++  L  L+     L + +  G
Sbjct: 913  ASSILVFGFGILVVYLVLSAQYESYVTPVIILMTVPLAMLGALVFLAARSIDLNIYAQVG 972

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +V  IGLA  + IL+ E   ++ +   S   +           I  + I AL     L  
Sbjct: 973  LVTLIGLAAKNAILIVEVAEQKLKAGSSATDAAIAAAESRLRPILMTAIAALAGFFPLVV 1032

Query: 480  ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
                G  + +     +   +L++   ++ +V    +FI + + 
Sbjct: 1033 ASGAGAHSQQALGSVIFGGLLVATVLSLGVVPPFYVFIKQIRH 1075


>gi|302345232|ref|YP_003813585.1| putative Multidrug resistance protein MexB [Prevotella
           melaninogenica ATCC 25845]
 gi|302150205|gb|ADK96467.1| putative Multidrug resistance protein MexB [Prevotella
           melaninogenica ATCC 25845]
          Length = 1087

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/695 (11%), Positives = 201/695 (28%), Gaps = 48/695 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G++  +        ++++P+  P   IS+    +G        D
Sbjct: 8   KRPVLSTVISIFFVLLGIIGLI-----SLPIEQYPNIAPPT-ISIQTFYQG-------AD 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +N  +    + + + ++       +        IT+ F         A  V   + 
Sbjct: 55  AQTVLNSVITPLEESI-NGVENMTYMESTATNAGMAMITVYFKQGADPNMAAVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  +  +  +  +  +  ++V+     D         +       +  +      
Sbjct: 114 QAQALLPAEVTRAGVTVSKRQSSNVVMYSLTTDDGRYDDEFLTNYNNINIVPMLKRINGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P +++Q     + +S      N       FG +    +   +
Sbjct: 174 GDVHIPGMKTYSMRIWLYPDKMKQHKLVPSDVSMALAEQNIEAAPGSFGEQ---SNQKFE 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +  K  +                 +    I       +         +     +    
Sbjct: 231 YTMRYKGRL-------------KTPEEYGNIIISSNTNGQTVHLRDVAKVELGGLMYSVM 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
               +      + +  A  +     +      A  +    P     +E+        S  
Sbjct: 278 MKNNSRPAVIGMVNQVAGSNATQIADDVKTALADAQKQMPPGMKVTIEQDVTEFLFASIE 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV  V+++ +   +  L+   ++ + +I T   L + G ++ L +++ +
Sbjct: 338 EVVFTLFITLLLVFFVVYIFLQDIRSTLIPMIAVPVALIGTFFFLWVFGFSINLLTLSAL 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L I + VD  I+V E +  +      S   +     +     I    +      V + F
Sbjct: 398 LLAIAIVVDDAIVVVEAVHAKLDLGYKSAMTAAIDAMNEISGAIISITLVMSAVFVPVSF 457

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM----KSIDINPLSRFF 532
            GG +    R F +TM +SI+IS   A+++  A+    ++        K +         
Sbjct: 458 IGGTSGTFYREFGVTMAVSIVISALNALTLSPALCAIFLKPHSKDEGHKKLSRVDRFHMA 517

Query: 533 LIPDCIAIQ---------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                  I           +  R+      IL  +  +  +         +   G    +
Sbjct: 518 FNTQYDKINTKYQKVVEKIINHRWISSLAVILGIVALVVTMKFTQTGLVPNEDTGTLFAM 577

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           ++  P    V    +       ++   +   +  +V   +  G    Q+  +  +K    
Sbjct: 578 ISLPPGTSQVETQKVTDQVDKMLASNPYIERREQIVGYNFMAGQGSNQSTFIIKLKPFAE 637

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
               +     +   G  I+   I      +I+  I
Sbjct: 638 RKYGMIDRIKSVFDGAGIAGLFIDPTSSNMILGMI 672



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/297 (10%), Positives = 85/297 (28%), Gaps = 15/297 (5%)

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                      +         ++    +   ++  G   + V     +        L+ + 
Sbjct: 771  QGYYGGMYASNFNAYGKLFRVMIQGTVESRMNEDGLTNIYVRTAGGMAPVSEFCTLKRVY 830

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                  +        +         S    +  E V K++                 + S
Sbjct: 831  GPSNITRFNLFTSIAISATPADGYSSGQAIQAAEEVAKQVLPQGYGYEFSGLTRSEKEAS 890

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
                      +I     + +Y+ +      +   L  I ++ + ++    F  +FG   +
Sbjct: 891  NS------TAMIFVLCIVFVYLILSAQYESYILPLAVILSIPIGLSGAFIFTLIFGHNND 944

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            +    +++ LIG    + +++ +   +      T ++ +          L   + TS+A 
Sbjct: 945  IYMQISLIMLIGLLAKNAILIVEFALE---RRRTGMAIKYAAILGAGARLRPILMTSLAM 1001

Query: 780  FISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             I +LP+    G               G+++     +F+   +  F    + +   +
Sbjct: 1002 IIGLLPLMFASGVGRNGNQTLGAAAVGGMLIGTLCQVFVVPALFAFFQYLQERVKPL 1058



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 56/440 (12%), Positives = 144/440 (32%), Gaps = 18/440 (4%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD-MGFSRAYSTI 463
           ++ + +T T   +A I +      D N+          +   S   +L     +RA  T+
Sbjct: 76  MTYMESTATNAGMAMITVYFKQGADPNMAAVNV-----QNRVSQAQALLPAEVTRAGVTV 130

Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
                + ++   +    G            ++I+  +     +    +  +  Y     +
Sbjct: 131 SKRQSSNVVMYSLTTDDGRYDDEFLTNYNNINIVPMLKRINGVGDVHIPGMKTYSMRIWL 190

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             + + +  L+P  +++            S                      +    + +
Sbjct: 191 YPDKMKQHKLVPSDVSMALAEQNIEAAPGSFGEQSNQKFEYTMRYKGRLKTPEEYGNIII 250

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +N       +R   +    G +            V            T++ + VK  + 
Sbjct: 251 SSNTNGQTVHLRDVAKVELGGLMYSVMMKNNSRPAVIGMVNQVAGSNATQIADDVKTALA 310

Query: 644 EIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
           +            +   ++  L   I + +  + I+ + +   ++I        L  +  
Sbjct: 311 DAQKQMPPGMKVTIEQDVTEFLFASIEEVVFTLFITLLLVFFVVYIFLQDIRSTLIPMIA 370

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T  F  +FG   NL  ++A+L  I   V+D +VV + +   + L     S   
Sbjct: 371 VPVALIGTFFFLWVFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLDLGYK--SAMT 428

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
               ++NE  G  +  ++      +P++  GG+       F + MA  IV++A +++ ++
Sbjct: 429 AAIDAMNEISGAIISITLVMSAVFVPVSFIGGTSGTFYREFGVTMAVSIVISALNALTLS 488

Query: 817 APILLFI---YDWRAKNARI 833
             +       +     + ++
Sbjct: 489 PALCAIFLKPHSKDEGHKKL 508


>gi|74312599|ref|YP_311018.1| multidrug efflux system subunit MdtB [Shigella sonnei Ss046]
 gi|123616827|sp|Q3Z0C9|MDTB_SHISS RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|73856076|gb|AAZ88783.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|323168802|gb|EFZ54482.1| multidrug resistance protein mdtB [Shigella sonnei 53G]
          Length = 1040

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFT 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|319638634|ref|ZP_07993396.1| RND protein [Neisseria mucosa C102]
 gi|317400383|gb|EFV81042.1| RND protein [Neisseria mucosa C102]
          Length = 1070

 Score =  158 bits (399), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 68/593 (11%), Positives = 161/593 (27%), Gaps = 48/593 (8%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF----LKK 83
            +  + ++PS                  + L           ++     +       ++ 
Sbjct: 28  QKLPISQYPSVAAPT-------------ITLRATYPGASAQVMEDSVLAVIERNMYGVEG 74

Query: 84  EGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                 S        ++L+F     ++     V   L  V S L    ++  +  +  + 
Sbjct: 75  LDYMTTSANSSGSGSVSLTFTPETNEDLAQVDVQNKLSEVLSTLPSTVQQYGVTVSKARS 134

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
             + +   + +       E +    R  I ++   +   Q          +    DP +L
Sbjct: 135 NFLQVVMLSSE--KQSIEEMNDYAQRNIIPELQRIDGVGQVQLFGAQR-AMRIWVDPKKL 191

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           +    + A ++      N        G             V  + ++S            
Sbjct: 192 QNYNLSFATVTNALATQNIQISAGSIGSLPAAAGQTISATVTAQGQLS------------ 239

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    I          +      +   +        L                +  
Sbjct: 240 -TAEEFGNIILVSNTDGSNVYLKDVAKVSLGMQDYSSSTRLNGVNTTGMAVMLSNSGNAL 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T        A+L+          +          S      T      LV +V+++ + 
Sbjct: 299 ATATAVKEKMAVLQKYFPDGMSWKIPYDTSKFVEISIEKVIHTLLEAIVLVFLVMYLFLQ 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             ++ L+    + ++++   A +S +G ++ + ++  +VL IG+ VD  I+V E +    
Sbjct: 359 NIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENVERIM 418

Query: 443 -RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILI 498
             +  S   +      +    +       +   V L  F    G   + FA+TM  SI  
Sbjct: 419 ASEGLSPKAATKKAMGQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMVASIGF 478

Query: 499 SMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
           S F A+++  A+   +           +       +    +        +A    +    
Sbjct: 479 SAFLALTLTPALCATMLKPIQKGHHEEKKGFFGWFNKKFDNWTHGYEGWVAKVLRKTLRM 538

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            V    L  +     +         + +G + L V            + L  +
Sbjct: 539 MVVYIGLTVVGVFLFMRLPTSFLPTEDQGNLMLSVQLPAGATKERTDATLAQI 591



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 93/249 (37%), Gaps = 6/249 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   I +       V L  V      +Q    S +        +  +    G+++A    
Sbjct: 244 FGNIILVSNTDGSNVYLKDVAKVSLGMQDYSSSTRLNGVNTTGMAVMLSNSGNALATATA 303

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           ++     + +  P            K     I K I  ++ + + + + +++  +   + 
Sbjct: 304 VKEKMAVLQKYFPDGMSWKIPYDTSKFVEISIEKVIHTLLEAIVLVFLVMYLFLQNIRYT 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + +     F +  G+  N+  + A++ +IG  V+D +VV + +     + + 
Sbjct: 364 LIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMASE 421

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +S +    K++ +  G  +  +       +P+A++ G+       FA+ M   I  +A 
Sbjct: 422 GLSPKAATKKAMGQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMVASIGFSAF 481

Query: 811 SSIFIAAPI 819
            ++ +   +
Sbjct: 482 LALTLTPAL 490



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 689  KWYFALGAITTLILDITKTLGFF------ALFG----IEFNLTAVAAVLTLIGYSVNDKV 738
                A+  +  L L I   LG        AL G       ++      +T++G S  + +
Sbjct: 893  SIPLAVILVIPLGL-IGAALGVTGRNMFEALLGSIPAYANDIYFQVGFVTVMGLSAKNAI 951

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---G 795
            ++ +  +    L     S  +    + +      + TS A  + V+P+ V  G+      
Sbjct: 952  LIIEFAKD---LQAQGKSALEAALVAAHLRFRPIIMTSFAFILGVVPLYVASGASSASQR 1008

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    + +G+++    S+F      + +  +  + A
Sbjct: 1009 AIGTTVVWGMLIGTILSVFFVPLFYVVVRKFFKETA 1044


>gi|39936836|ref|NP_949112.1| acriflavin resistance protein [Rhodopseudomonas palustris CGA009]
 gi|192292662|ref|YP_001993267.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
 gi|39650693|emb|CAE29216.1| putative RND efflux transporter [Rhodopseudomonas palustris CGA009]
 gi|192286411|gb|ACF02792.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
          Length = 1034

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 75/644 (11%), Positives = 182/644 (28%), Gaps = 41/644 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  IG   A+        + ++P                         
Sbjct: 9   KRPVLSLVVSMLILLIGFRAAM-----TLPIRQYPKLSNTVVT---------ITTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +  +       S  Q Q+ IT+    +        +V   +  
Sbjct: 55  SPDLMQGFITTPLEQAVASAEGVDYITSSSTQGQSLITVYVKLNFDPNQALTEVLAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   +  +    ++V +T +  +++      +++   AI  S  + R     +   +   
Sbjct: 115 VKYLIPKEANDPVIVKSTGQTTAVMYIGFASNELSGSAI--SDYLTRVVQPVLSTVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP R+     +   ++      N               +     
Sbjct: 173 SADILGGQTFAMRIWLDPIRMAGRGVSANDITAAIQANNFQAAAGQTKGYLTVSNITTNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                    +       +     G           +           
Sbjct: 233 DL--------------------QNVDQFKRMIVKAQGGGFVRMEDVATVELAAQSTDSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +             Q +    +     L   +     P     V   +      S   
Sbjct: 273 AFSGERAIFIGVQATPQGNPLNIVTGVRALFPEIERNLPPSMSMKVAYDSTKFIRSSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T     G+V++V+F+ +   +  ++   +I L++I     +  +G ++ L ++  +V
Sbjct: 333 VEKTLIEAVGIVIVVIFLFLASFRSVIIPVVTIPLSLIGVCTAMLAMGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +  +G       +    IT       + F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHLEEGKSPVQASLIGAREIVGPVISMTITLAAVYAPIGFLG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
              G   R FA T+  S+++S   A+++   M    +   +            F  I   
Sbjct: 453 GLTGALFREFAFTLAGSVIVSGIIALTLSPMMCSVLLKHQESQGWFARKVDHVFSSITRW 512

Query: 538 IAIQFMRARFWGVGISIL-FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              Q  R+  +     +    I  +        +  +  +    +     +    + +  
Sbjct: 513 YGRQLDRSLDYRPITGLFAVVILGLVGFMYTHTSKELAPEEDQGIVFAVTKAPKYANIDY 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                +  D ++ +F       +       ++     +L+   +
Sbjct: 573 ANYYGEKLDKAYASFPETDLRFILNGTSGPNNGIAGMLLKPWDE 616



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 73/202 (36%), Gaps = 9/202 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +   +++ +   + +    ++         E+ +  I  V I  + + +++     +  
Sbjct: 301 ALFPEIERNLPPSMSMKVAYDSTKFIRSSIDEVEKTLIEAVGIVIVVIFLFLA---SFRS 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +          G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 358 VIIPVVTIPLSLIGVCTAMLAMGFSINLLTLLAMVLAIGLVVDDAIVVVENIH---RHLE 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              S          E +G  +  ++       P+   G   G++   FA  +A  ++V+ 
Sbjct: 415 EGKSPVQASLIGAREIVGPVISMTITLAAVYAPIGFLGGLTGALFREFAFTLAGSVIVSG 474

Query: 810 SSSIFIAAPILLFIYDWRAKNA 831
             ++ ++  +   +   +    
Sbjct: 475 IIALTLSPMMCSVLLKHQESQG 496



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 69/191 (36%), Gaps = 8/191 (4%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV--IISAIAMLIYIWIRFK-WYFALGA 696
              + +         +        + +     + +    + I + + +  +F+     L  
Sbjct: 816  DFLEQQAKNLPSGFSHDYLADARQYVQEGNQLAITFGFALIIIFLVLAAQFESLRDPLVI 875

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            + ++ + I+  L          N+     +LTL+G      +++ +  R+       ++ 
Sbjct: 876  MISVPMAISGALIPLFFGVATINIYTQVGLLTLVGLISKHGILMVEFARE--LQIKEALD 933

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVIGSFAIPMAF--GIVVAASSSI 813
             R  I++S    L   + T+ A    +LP+    G      F+I +    G+++    ++
Sbjct: 934  KRTAIEQSARVRLRPILMTTAAMVTGLLPLLTASGAGAASRFSIGLVVVSGMMIGTLFTL 993

Query: 814  FIAAPILLFIY 824
            F+   + + I 
Sbjct: 994  FVLPAVYVAIG 1004


>gi|53718901|ref|YP_107887.1| putative transport system membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76809275|ref|YP_332903.1| multidrug resistance protein mdtC [Burkholderia pseudomallei 1710b]
 gi|126441778|ref|YP_001058405.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 668]
 gi|126451634|ref|YP_001065640.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 1106a]
 gi|167815104|ref|ZP_02446784.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 91]
 gi|167823521|ref|ZP_02454992.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 9]
 gi|167845070|ref|ZP_02470578.1| multidrug resistance protein MdtC [Burkholderia pseudomallei B7210]
 gi|167893614|ref|ZP_02481016.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 7894]
 gi|167902060|ref|ZP_02489265.1| multidrug resistance protein MdtC [Burkholderia pseudomallei NCTC
           13177]
 gi|167910297|ref|ZP_02497388.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 112]
 gi|217423371|ref|ZP_03454872.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 576]
 gi|237811648|ref|YP_002896099.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Burkholderia pseudomallei MSHR346]
 gi|242318037|ref|ZP_04817053.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 1106b]
 gi|254180303|ref|ZP_04886902.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 1655]
 gi|254188269|ref|ZP_04894780.1| multidrug resistance protein MdtC [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197621|ref|ZP_04904043.1| multidrug resistance protein MdtC [Burkholderia pseudomallei S13]
 gi|254261813|ref|ZP_04952867.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 1710a]
 gi|254298143|ref|ZP_04965596.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 406e]
 gi|52209315|emb|CAH35260.1| putative transport system, membrane protein [Burkholderia
           pseudomallei K96243]
 gi|76578728|gb|ABA48203.1| multidrug resistance protein mdtC [Burkholderia pseudomallei 1710b]
 gi|126221271|gb|ABN84777.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 668]
 gi|126225276|gb|ABN88816.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 1106a]
 gi|157807719|gb|EDO84889.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 406e]
 gi|157935948|gb|EDO91618.1| multidrug resistance protein MdtC [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169654362|gb|EDS87055.1| multidrug resistance protein MdtC [Burkholderia pseudomallei S13]
 gi|184210843|gb|EDU07886.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 1655]
 gi|217393229|gb|EEC33250.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 576]
 gi|237504831|gb|ACQ97149.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Burkholderia pseudomallei MSHR346]
 gi|242141276|gb|EES27678.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 1106b]
 gi|254220502|gb|EET09886.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 1710a]
          Length = 1100

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 159/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL   +   +       FP+ +                  L    
Sbjct: 10  RPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTIL--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVAEMTSMSSVGNARIVLQFNLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMV-VSLTSKTASPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSLSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +G H      N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEAGPHRYQLYTNDQATKAAQYKDLVIAYRNHAAVSLSDVSSVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        I       +   TIE        L A                    S +  
Sbjct: 275 MNGERAVLVILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG +L   S+  +++
Sbjct: 335 EHTLIIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++        +           + + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLVVSLTLTPMMCARLLPEAHAPRDEGRVARWLERGFEWMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +       +  +  +  +   Y +  KG     
Sbjct: 515 RGYERTLSWALRHPFTILMTLVATIALNIALYIVVPKGFFPQQ 557



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +S + M++++++R  W   L     + + I  T G   L G   N  ++ A++   
Sbjct: 338 LIIAVSLVVMVVFLFLR-NWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +                 E     +  S++     LP+ + G
Sbjct: 397 GFVVDDAIVVLENI---ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G V      FA+ ++  I V+   S+ +  
Sbjct: 454 GIVGRLFREFALTLSLAIAVSLVVSLTLTP 483



 Score = 44.7 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 93/215 (43%), Gaps = 7/215 (3%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + E+    TIQ +     +  +E ++   + ++ +
Sbjct: 869  VATTISFNLPPGVSLSKATQVIYQTMAEVGVPPTIQGSFQGTAQAFQESLKDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LAAVYIVLGILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D     +       S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFA---IDASRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAE 1045

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++V+   +++    + L++   R
Sbjct: 1046 MRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLR 1080


>gi|306844917|ref|ZP_07477499.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella sp. BO1]
 gi|306274746|gb|EFM56530.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella sp. BO1]
          Length = 1043

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/516 (12%), Positives = 152/516 (29%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQITQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNGKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              GG  R F   + +++L+S   A+++   +    
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRF 492



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 84/253 (33%), Gaps = 11/253 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       +  V +      I   + ++       L  ++    +++  ++ +      +
Sbjct: 251 VYIKGRTQIRDVATVTLGPDIESSAVRSNGKTAIGLGIVRQAQSNTLDISQGVRAAVANL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLI 701
            + +P                  I +  + +I S I ++  I    +     L    ++ 
Sbjct: 311 QKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVIIVVAIIFMFLWDARATLIPALSMP 370

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T+    L G   N+  + A++   G  V+D +VV + +   ++     +  R   
Sbjct: 371 VALIGTIAAIYLVGFSVNILTLLALVLATGLVVDDAIVVLENV---VRRRNQGMGPRAAA 427

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                E     + T++      +P++      G +   F   +A  +++    S  +A  
Sbjct: 428 VLGTQEVFFAVIATTLTLAAVFVPISFLPGQAGGLFREFGFVLAIAVLL----SSVVALT 483

Query: 819 ILLFIYDWRAKNA 831
           +   +     K A
Sbjct: 484 LCPMLASRFLKEA 496



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 89/240 (37%), Gaps = 8/240 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             S++  +    +  Q     +   V +     D  A        ++    ++P  +    
Sbjct: 786  MSSIARVVEKAVPPQLDRETRQRSVAITTNLRDDFALGNAFAAAQEIAAPLLPPGSHIIP 845

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                  +S       IV    + + +L+ +  +F+ +  AL  + T+ L +   +    L
Sbjct: 846  LAEASTLSETSSGMAIV-FGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMIL 904

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   N+ +   ++ L+G    + +++ +      +L    ++ R+ I+++ N  L    
Sbjct: 905  TGTSLNVYSQIGLVLLVGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVC 961

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T + A +  +P+ +    G     +    +  G+ +A  +++++     L +  +    
Sbjct: 962  MTMICAVLGGVPLVLASGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTKPK 1021


>gi|221214023|ref|ZP_03586996.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Burkholderia multivorans CGD1]
 gi|221166200|gb|EED98673.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Burkholderia multivorans CGD1]
          Length = 1102

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/583 (12%), Positives = 156/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGLFAFVKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVTEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +                +   +   Q
Sbjct: 116 RADLPAALKSNPTYRKVNPADSPIMI-VSLTSDTASPARLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VTVSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                 +   +  + +  +
Sbjct: 217 --KGAIEFGPQHYQLYTNDQASQASQYRDLVVAYRNGAGVRLSDLSEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIDTIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++  +     +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLPERHDAREEGRFARFLERCFARMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   +L  +     +  +   Y I  KG     
Sbjct: 515 RGYERSLSWALSRPLLILLILFATIGLNVYLYVIVPKGFFPQQ 557



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +S + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAVSLVVMVVFLFLR-NWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---ARHIENGKPRLQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+ + S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLAVSLTVTP 483



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 93/215 (43%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + +I    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      + +    S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRNH--GKSSFDAIREACLLRFRPIMMTTMAALLGALPLAFGSADGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++++   +++    + L++   R
Sbjct: 1047 LRAPLGIAIAGGLIMSQVLTLYTTPVVYLYMDRLR 1081


>gi|86148686|ref|ZP_01066965.1| putative multidrug resistance protein [Vibrio sp. MED222]
 gi|85833533|gb|EAQ51712.1| putative multidrug resistance protein [Vibrio sp. MED222]
          Length = 1037

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/626 (10%), Positives = 169/626 (26%), Gaps = 35/626 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +   P                      E      +   +    ++  S +     
Sbjct: 29  FNKLAVREMPDIESPVV---------SISTRYEGASATIIESQITSNLEDQLSGISGIDE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              + R   ++IT++F            V   +      L  +    ++        + V
Sbjct: 80  IESTTRNGSSRITITFELGYDLNTGVSDVRDAVARAQRSLPDEADDPIVYKNNGSGEASV 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               +  +      + +    R  ID+  +         S  +   +  +  P+ +    
Sbjct: 140 YINLSSTE--MDRTQLTDYTERVLIDRFSLISGVSSVDISGGLYKVMYVKLKPALMAGRG 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T + ++      N    G                     V    I ++  TA    +  
Sbjct: 198 VTASDITQALRNENIESPGGE-------------------VRNDAIVMSVRTARSYTEAK 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +          +     ++                V        ++  +     +
Sbjct: 239 DFEYLVVKRASDNAPIYLKDVADVYIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVAD 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   ++          V+  +      S S    T  I  GLV++VL++ +   + 
Sbjct: 299 LVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVYSTLFITGGLVILVLYVFIGQARA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ +++I +       G ++ L ++  ++L IGL VD  I+V E I     + +
Sbjct: 359 TLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGE 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTA 503
           S   +   G       +  + +  ++  + + F  G        F++ + +S++ S   A
Sbjct: 419 SPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSVIA 478

Query: 504 ISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
           +++   +   I++     +            L     ++      +      I+ S    
Sbjct: 479 LTLTPVLGSKILKANVKPNRFNHFVERVFGKLEGGYKSVLRRALNWRWAAPIIIISCMGG 538

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                  +   +  +    +     R  D +       ++ I +       G+       
Sbjct: 539 SYGLMQQVPSQLTPQEDRGVIFAFVRGADATSYNRMSANMDIVEERLMPLLGQGFLKSFS 598

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVP 647
              P            V   + +   
Sbjct: 599 IQSPAFGGNAGDQTGFVIMILEDWDE 624



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 92/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++         + K    L V          ++   +     +     F  +  
Sbjct: 219 VRNDAIVMSVRTARSYTEAKDFEYLVVKRASDNAPIYLKDVADVYIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V ++V K++  I           V    +  + R        +
Sbjct: 279 VNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++Y++I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYVFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSVIALTLTPVLGSKILKANVKPNR 498



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 673  VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF---ALFGIEFNLTAVAAVLTL 729
            V+ +   ++ Y+ +  ++   +  +  +        G F    L     N+ +   ++ L
Sbjct: 855  VVFALAMLVAYLVLAAQFESFINPLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIML 914

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ +      +L    I F   I  +    L   + T+       +P+   
Sbjct: 915  IGMVTKNGILIVEFAN---QLRDRGIEFEKAIIDASARRLRPILMTAFTTLAGAIPLITS 971

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    + FG+  A   ++F+   +   I        
Sbjct: 972  TGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRLISGSTRSPG 1016


>gi|284037250|ref|YP_003387180.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Spirosoma
           linguale DSM 74]
 gi|283816543|gb|ADB38381.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Spirosoma linguale DSM 74]
          Length = 1080

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/540 (14%), Positives = 154/540 (28%), Gaps = 31/540 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++   +I  +G+L  L        + ++P   P      G              +
Sbjct: 9   RPVTAIVSSIVIVILGVLALL-----SLPVSQYPDITPPVVQVTG---------TYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              V   +    +   +          +        + ++F         A  V   +  
Sbjct: 55  AQTVEQTVATPIETQVNGTPGMDYVQTNATNDGRMSMNVTFKVGTDVNIAALDVQNRVGI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  +V         +L      +   +             D +       
Sbjct: 115 AQPQLPQEVTRLGVVVRKRNPSLFMLVAMYSPKGTHNVSFLDNYTNIYIRDALLRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +     P RL QL  T  ++       N    G   G      S   +Y
Sbjct: 175 DI-FSRADDFSMRIWLKPDRLAQLNLTPDEVVAALQEQNLQVAGGSVGASPQPASQAFEY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +S                   + +  D       +      +           
Sbjct: 234 SVFTNSRLSKEEDFRK------------IIVRSDPAKGSLVYLNDVARVQLGKFSYASNS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +  +       +   T +        L+         +V   +V     S   
Sbjct: 282 FVDGKRASYLLVYQLPGSNALETAKGVYAAMDKLKQTFPKDIEYVVPFESVSVIQVSIGE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV++V+F+ +   +  L+   +I ++++ T AL   LG T+   ++   V
Sbjct: 342 VVETLAEALVLVILVVFLFLQSWRATLITLLAIPVSIVGTFALFVPLGFTINTLTLFAFV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E ++    K  S   +         + +    +      V + F  
Sbjct: 402 LAIGIVVDDAIVVVEAVQVNIDKGMSPKEATKEAMREISAPVIAIALILAAVFVPVGFIP 461

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FAIT+ +S+LIS F A+S+  A+   +++   +          F+      
Sbjct: 462 GIVGRLYQQFAITIAVSVLISAFVALSLTPALCTLLLKPMHIDENAKGLNKFFYKFNQWF 521



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 68/163 (41%), Gaps = 8/163 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAA 725
              I   ++S   + +++   ++ W      + ++ +     +    +F  +  N+ A   
Sbjct: 874  SSIYIFMLSIGFVFLFLAALYESWSVPFSVLLSVPIGALGAITALIIFPYLTNNVYAQIG 933

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++TLIG +  + +++ +  ++            +   +++   L   + TS+A  + V P
Sbjct: 934  LITLIGLAAKNAILIVEFAKE---RVDKGEDLLESTIEAVRLRLRPILMTSLAFILGVFP 990

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +A+    GG    +    +  G++ A S +IF+   + + I  
Sbjct: 991  LAIASGAGGVARATIGRTVLGGMLAATSLAIFVVPVLYVAISR 1033



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 57/141 (40%), Gaps = 8/141 (5%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + I  T   F   G   N   + A +  IG  V+D +VV + ++ N+
Sbjct: 363 SWRATLITLLAIPVSIVGTFALFVPLGFTINTLTLFAFVLAIGIVVDDAIVVVEAVQVNI 422

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAVWG--GSVIGSFAIPMAFG 804
                 +S ++   +++ E     +  ++   A        + G  G +   FAI +A  
Sbjct: 423 ---DKGMSPKEATKEAMREISAPVIAIALILAAVFV-PVGFIPGIVGRLYQQFAITIAVS 478

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           ++++A  ++ +   +   +  
Sbjct: 479 VLISAFVALSLTPALCTLLLK 499


>gi|73540456|ref|YP_294976.1| acriflavin resistance protein [Ralstonia eutropha JMP134]
 gi|72117869|gb|AAZ60132.1| Acriflavin resistance protein [Ralstonia eutropha JMP134]
          Length = 1071

 Score =  158 bits (399), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/543 (11%), Positives = 148/543 (27%), Gaps = 38/543 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N     ++      +GL         +  +D+FP       +                 
Sbjct: 9   QNPVLATMMMMAFIVVGLFS-----YQRLPVDQFPDITFPVVV---------VETEYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E+ + +           Q  + + + F  S      A  V   L  
Sbjct: 55  APESVESDVTRKVEEIVNTISGIDEIFSHSYQGTSVVVVKFDLSVDVGQAAQDVRDKLAL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNN-IDQVISHAIEQSMEIIRQRIDQIGISEST 180
           +  +L  + K+  ++     +  I     +          E +    +    ++      
Sbjct: 115 IRPQLRDEVKEPRVLRYDPTDAPIFYLSVSNAPGAQRSQRELTTIADQIVRKRLETVRGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      ++     P++L  L     ++       N                   +
Sbjct: 175 GAINIVGGTKREVEIRIRPAQLEALGIGIDQVMNAIRSENQELSAGELRSSSTETVVQIK 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V                            I      ++        ++          
Sbjct: 235 GRVPTP--------------------DAFRHIIVARRASQPVTLGEIADVRDGQEEQESL 274

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L                +   T++    +A  +R          V          S  
Sbjct: 275 ALLDGKRALFLSVVKAQGQNTVDTVDGLVRMADEVRKLVPAGVQLTVVNDTARGIRSSVK 334

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T    A L + ++F+ +   +  ++   ++ + +I T  ++ L G TL + ++  +
Sbjct: 335 EVRSTLLEGALLTVAIVFLFLGSWRSTVITGLTLPIALIGTFGVMYLCGFTLNVITLMAL 394

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL +D  I+V E I   N   +    S   G +     +  +  + +   + + F 
Sbjct: 395 SLCVGLLIDDAIVVRENIVRHNLMGKDHRTSSLDGTAEIGLAVLATTFSIVAVFLPVGFM 454

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G     F IT+  ++LISMF + ++   +           + +        +    
Sbjct: 455 GGIIGRFFHQFGITVVAAVLISMFVSFTLDPMLSSVWHDPDLHGTGNKTSWYGRTIGRLL 514

Query: 538 IAI 540
              
Sbjct: 515 DWF 517



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 57/157 (36%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + I       W   +    TL + +  T G   L G   N+  + A+   +G 
Sbjct: 341 LEGALLTVAIVFLFLGSWRSTVITGLTLPIALIGTFGVMYLCGFTLNVITLMALSLCVGL 400

Query: 733 SVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+ +        R        E     + T+ +     LP+   GG
Sbjct: 401 LIDDAIVV----RENIVRHNLMGKDHRTSSLDGTAEIGLAVLATTFSIVAVFLPVGFMGG 456

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      F I +   ++++   S  +   +    +D
Sbjct: 457 IIGRFFHQFGITVVAAVLISMFVSFTLDPMLSSVWHD 493



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 78/253 (30%), Gaps = 12/253 (4%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                D +     L  +     +       +  L R      ++  ++        K    
Sbjct: 785  QTNADGTPKMVPLRQVAELVQTTGANQISRRDLNREVELTANTAGRSAGEVARDVKAALD 844

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLIL 702
                        G          G     ++   + IY+ +      ++  +  +T+L L
Sbjct: 845  GMTWPAGYKYRFGGSTKSMNESFGYAVSALALAVIFIYMILASQFASFFQPIAIMTSLPL 904

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS------ 756
             +        LF    N+ ++   + L+G    + +++ D   +  + +           
Sbjct: 905  TLIGVFAALLLFRSTLNMFSIIGFIMLMGLVTKNAILLVDFANQARRGHVDGADGHAPLS 964

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
                + ++    L   + T++A    ++P+A     G          +  GI+ ++  ++
Sbjct: 965  REAALIEAARVRLRPILMTTLAMIFGMVPLAFSLGEGAEQRAPMGQTVIGGIITSSILTL 1024

Query: 814  FIAAPILLFIYDW 826
             +   I  ++ D+
Sbjct: 1025 VVVPVIYTYLDDF 1037


>gi|306842453|ref|ZP_07475104.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella sp. BO2]
 gi|306287309|gb|EFM58789.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella sp. BO2]
          Length = 1043

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/516 (12%), Positives = 152/516 (29%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQITQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNGKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              GG  R F   + +++L+S   A+++   +    
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRF 492



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 84/253 (33%), Gaps = 11/253 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       +  V +      I   + ++       L  ++    +++  ++ +      +
Sbjct: 251 VYIKGRTQIRDVATVTLGPDIESSAVRSNGKTAIGLGIVRQAQSNTLDISQGVRAAVANL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLI 701
            + +P                  I +  + +I S I ++  I    +     L    ++ 
Sbjct: 311 QKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVIIVVAIIFMFLWDARATLIPALSMP 370

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T+    L G   N+  + A++   G  V+D +VV + +   ++     +  R   
Sbjct: 371 VALIGTIAAIYLVGFSVNILTLLALVLATGLVVDDAIVVLENV---VRRRNQGMGPRAAA 427

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                E     + T++      +P++      G +   F   +A  +++    S  +A  
Sbjct: 428 VLGTQEVFFAVIATTLTLAAVFVPISFLPGQAGGLFREFGFVLAIAVLL----SSVVALT 483

Query: 819 ILLFIYDWRAKNA 831
           +   +     K A
Sbjct: 484 LCPMLASRFLKEA 496



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 89/240 (37%), Gaps = 8/240 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             S++  +    +  Q     +   V +     D  A        ++    ++P  +    
Sbjct: 786  MSSIARVVEKAVPPQLDRETRQRSVAITTNLRDDFALGNAFAAAQEIAAPLLPPGSHIIP 845

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                  +S       IV    + I +L+ +  +F+ +  AL  + T+ L +   +    L
Sbjct: 846  LAEASTLSETSSGMAIV-FGFAIIIILLVLAAQFESFISALIVMATVPLGLGCAVFAMIL 904

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   N+ +   ++ L+G    + +++ +      +L    ++ R+ I+++ N  L    
Sbjct: 905  TGTSLNVYSQIGLVLLVGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVC 961

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T + A +  +P+ +    G     +    +  G+ +A  +++++     L +  +    
Sbjct: 962  MTMICAVLGGVPLVLASGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTKPK 1021


>gi|160899389|ref|YP_001564971.1| acriflavin resistance protein [Delftia acidovorans SPH-1]
 gi|160364973|gb|ABX36586.1| acriflavin resistance protein [Delftia acidovorans SPH-1]
          Length = 1075

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 60/550 (10%), Positives = 155/550 (28%), Gaps = 41/550 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  +  +L   +  +G+         +  +D+FP+      +   +D  G          
Sbjct: 10  NPVFATMLMLALMVLGVFS-----YQRLKVDQFPNVDFPVVVVT-VDYPG--------AS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +E  + +           +  + + + F         A+ V   +  V
Sbjct: 56  PEIVESEVTKKIEEGVNSIAGINALTSRSYESTSVVIIEFQLHVDGRRAAEDVREKVASV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISI----VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
              L  + K+  ++        I    VL Q +       A+  +    +    ++    
Sbjct: 116 RPTLRDEVKEPRVLRFDPASSPIWSVAVLPQADAGAKAPDAVALTSWADQVLKKRLENVR 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                        ++     P  L     T  ++       N                  
Sbjct: 176 GVGAVNLVGATPREINIYLQPEALEAYAITPDQIVNAVRSENQDLPLG------------ 223

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                      S         +   K  +    I   + G           +      + 
Sbjct: 224 --------AIRSREQERVVQIDARMKRPQDFERIIVAQRGGAPVRLGQLARVQDGAGELE 275

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              +  +              +    ++        + A             +      +
Sbjct: 276 TVALYNSSRTLLLSVQKAQDENTIEVVDGLNATLREIAAEVPAGVRLEPIADSARPIRVA 335

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +  + T    A L ++++F+ +   +  ++   ++ + +I T   +   G ++ + ++ 
Sbjct: 336 VNNVRQTLIEGAALTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMYWFGFSINMITLM 395

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + L +GL +D  I+V E I    +  +    +   G       +  + ++ +   + + 
Sbjct: 396 ALSLCVGLLIDDAIVVRENIVRHVQMGKDAHAAALDGTQEIGLAVLATTLSIVAVFLPIG 455

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F G   G     F IT+  +++ISMF + ++   +             +    S +    
Sbjct: 456 FMGGIIGKFFHEFGITIVAAVMISMFVSFTLDPMLSSVWHDPTIHAHGEQRGRSLYDRTL 515

Query: 536 DCIAIQFMRA 545
             +   F RA
Sbjct: 516 GRVTAWFERA 525



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  +A+ +LI       W   +    TL + +  T  F   FG   N+  + A+   +G 
Sbjct: 344 IEGAALTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMYWFGFSINMITLMALSLCVGL 403

Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+  +                E     + T+++     LP+   GG
Sbjct: 404 LIDDAIVV----RENIVRHVQMGKDAHAAALDGTQEIGLAVLATTLSIVAVFLPIGFMGG 459

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      F I +   ++++   S  +   +    +D
Sbjct: 460 IIGKFFHEFGITIVAAVMISMFVSFTLDPMLSSVWHD 496



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 68/191 (35%), Gaps = 12/191 (6%)

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688
            +   V   +   + +I      +       K   E     +  + ++ I + + +  +F 
Sbjct: 836  SSGEVSADILNALADIALPPGYRTQFSGATKSMNESFGYAVSALALAIIFIYMILASQFK 895

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMR 745
             +   L  +T+L L +   +    +FG   ++ ++  V+ L+G    + +++ D   R R
Sbjct: 896  SFLQPLALMTSLPLTLIGVVLALMMFGSALSMFSIIGVVMLMGLVTKNAILLVDFAIRAR 955

Query: 746  K-----NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
                  +       +     +  +    L   + T++A    ++P+A     G       
Sbjct: 956  GPHSDPDTGQIRDGLPREQALLLAARVRLRPILMTTLAMIFGMVPLAFALSEGSEQRAPM 1015

Query: 798  AIPMAFGIVVA 808
               +  G+V +
Sbjct: 1016 GQSVIGGVVTS 1026


>gi|86142973|ref|ZP_01061395.1| putative AcrB/AcrD family RND transport protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85830418|gb|EAQ48877.1| putative AcrB/AcrD family RND transport protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 870

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/646 (10%), Positives = 162/646 (25%), Gaps = 40/646 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKK-EGI 86
              + ++P   P               + +           +       L   +   E +
Sbjct: 29  TLPISQYPDIAPPT-------------VEVTASYQGANADVVRNSVLIPLEEQINGVENM 75

Query: 87  GVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
              +     +    IT+ F      +  A  V   +   NS L  +  +  + T+ ++  
Sbjct: 76  QYMTSTAGNDGSATITIYFDLGTDPDLAAMNVQNRVNKANSLLPEEVIRAGVSTSKKQTS 135

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            + +   +  +           +    + ++                  +     P  + 
Sbjct: 136 LVYIFSLHSTKDTYDQNFLQNYVNLNILPKLKRVNGIGDAFIYGARDYSMRIWLKPDVMA 195

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
                   +       N       FG   +      QY ++ K  +              
Sbjct: 196 SYGLVPNDVIAKLRQQNIEAAPGKFG---VNGDQAFQYTIKYKGRL-------------Q 239

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +    I   +             +                       S  A  +   
Sbjct: 240 TASEFGNIIVRADKDGHILRLDDIAKVELGALSYGSSTTTQGYPSTSIAVSQTAGSNAYE 299

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            I     +                          S    + T      LV IV+F+ +  
Sbjct: 300 LINECQRIIEESSKDFPSGIEYSPFLNANEFLNASIEKVEHTLIEAFILVFIVVFIFLQD 359

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  L+   S+ + ++ T   L + G T+ L ++  +VL IG+ VD  I+V E +  +  
Sbjct: 360 FRSTLIPAISVPVAIVGTFFFLKVFGFTINLLTLFALVLAIGIVVDDAIVVVEAVHAKLD 419

Query: 444 KN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILIS 499
           +  +S   +     S   S I    +      V + F GG      + F +T+ ++I+IS
Sbjct: 420 EGAKSARKATLSAMSEISSAIVSITLVMAAVFVPVSFIGGSAGVFYKQFGLTLAIAIVIS 479

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
              A+++  A+    +  K          +          I F       V         
Sbjct: 480 AVNALTLSPALCAIFL--KPHSEDHHKKKTGIQRFYAGFNIAFNAITAKYVKGVQFLLKR 537

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
               L +      + +              D   +  N+       +       ++   +
Sbjct: 538 KWLALGSIAAFSVLSWFLIKNTPTGFVPAEDSRAIFGNVILPPSASLERTEALTDQIDSI 597

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                  +S  +    +++                        +++
Sbjct: 598 IRTVPEVESSTRMAGQDLISGAGGSYGAFFIRLKDWEERAGEGQDI 643



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 92/247 (37%), Gaps = 7/247 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +            S          +   Q    ++       + + ++ ++  P   
Sbjct: 260 LDDIAKVELGALSYGSSTTTQGYPSTSIAVSQTAGSNAYELINECQRIIEESSKDFPSGI 319

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLG 709
             +  +   +     I K    +I + I + I ++I    +   L    ++ + I  T  
Sbjct: 320 EYSPFLNANEFLNASIEKVEHTLIEAFILVFIVVFIFLQDFRSTLIPAISVPVAIVGTFF 379

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  +FG   NL  + A++  IG  V+D +VV + +   +       S R     +++E  
Sbjct: 380 FLKVFGFTINLLTLFALVLAIGIVVDDAIVVVEAVHAKLDEGAK--SARKATLSAMSEIS 437

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYD 825
              V  ++      +P++  GGS       F + +A  IV++A +++ ++  +  +F+  
Sbjct: 438 SAIVSITLVMAAVFVPVSFIGGSAGVFYKQFGLTLAIAIVISAVNALTLSPALCAIFLKP 497

Query: 826 WRAKNAR 832
               + +
Sbjct: 498 HSEDHHK 504


>gi|296158696|ref|ZP_06841525.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
 gi|295890901|gb|EFG70690.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
          Length = 1106

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/583 (12%), Positives = 155/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+         +  +   P                     L    
Sbjct: 10  RPVATTLLAVGIALAGVFA-----FTKLPVAPLPQVDFPTI---------SVQATLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +               +IT+ F  +R  +  A  V   +   
Sbjct: 56  PDTVATSVASPLERHLGSIADVTEMTSMSSVGSTRITMQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N          + +L    +      A +            +   +   +
Sbjct: 116 RADLPASLRSNPTYHKVNPADAPILI-LALTSKTLTAGQLYDSAATVLQQSLSQVDGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P+ L         +       N +           R        
Sbjct: 175 VDVSGSANPAVRVELEPNALSHYGIGLEDVRAALAAANANSPKGSIEFGPNRVQIYTNDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                      D+                 +   +  + +  +
Sbjct: 235 ASKASQ--------------------YKDLVIAYRNGSAVKLSDVAEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   TI+    +   L A                    S    
Sbjct: 275 FNGKRSVLVILYRQPGANIIDTIDRVTAMLPQLHASLPADVEIAPAADRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  + +
Sbjct: 335 ERTLVIAVALVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +  +G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGVPRMKAAFLGAREVGFTVLSISISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R    +  +             + 
Sbjct: 455 IVGRLFREFALTLSLAIGVSLIVSLTLTPMMCSRLLREPHEQKEEGRFGRWLERGFASMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +    L     +  +  +   Y I  KG     
Sbjct: 515 RGYERTLGWALLHPRLIVTILLLTIGLNVWLYIIVPKGFFPQQ 557



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 84/242 (34%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V LS V   ++S++               ++  +    + +     +  + 
Sbjct: 245 VIAYRNGSAVKLSDVAEVVDSVEDLRNLGLFNGKRSVLVILYRQPGANIIDTIDRVTAML 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            ++   +P               R  ++     ++I+   +++ +++  + W   L    
Sbjct: 305 PQLHASLPADVEIAPAADRSTTIRASLKDTERTLVIAVALVVMVVFLFLRNWRATLIPSV 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + I  T G   L G   +  ++ A+    G+ V+D +VV + +    +     +   
Sbjct: 365 AVPISIIGTFGAMYLLGFSIDNLSLMALTIATGFVVDDAIVVLENI---SRHIENGVPRM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
                   E     +  S++     LP+ + GG V      FA+ ++  I V+   S+ +
Sbjct: 422 KAAFLGAREVGFTVLSISISLVAVFLPILLMGGIVGRLFREFALTLSLAIGVSLIVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 TP 483



 Score = 42.8 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 95/238 (39%), Gaps = 7/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S   G          +     + +     V+ +   + +   + +I    TI  + 
Sbjct: 858  SAIASFGPGSTPLSVNHQSQFVASTISFNLPPGVSLSTATQAIYDTMAQIGMPGTIHGSF 917

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++ +    + ++ +  A+ I + + ++ +   L  ++TL       L    LF
Sbjct: 918  QGTAQAFQQSMSDQPILILAALAAVYIVLGMLYESYIHPLTILSTLPSAGVGALLALLLF 977

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              EF++ A+  V+ LIG    + +++ D   +  +     +S RD I ++        + 
Sbjct: 978  KTEFSIIALIGVILLIGIVKKNAIMMVDFAIEASR---HGLSSRDAIFQACLLRFRPIMM 1034

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+ AA +  LP+A     G  +     I +  G++V+   +++    + L++   R +
Sbjct: 1035 TTCAALLGALPLAFGRGEGAELRAPLGIAIVGGLIVSQMLTLYTTPVVYLYMDRVRLR 1092


>gi|91794430|ref|YP_564081.1| hydrophobe/amphiphile efflux-1 HAE1 [Shewanella denitrificans
           OS217]
 gi|91716432|gb|ABE56358.1| Hydrophobe/amphiphile efflux-1 HAE1 [Shewanella denitrificans
           OS217]
          Length = 1078

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/508 (11%), Positives = 139/508 (27%), Gaps = 37/508 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  M    G +        +  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVISLMFFIAGAIAVW-----KLPITEYPEVVPPTVVVT-------------AS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L   +   E +   S +   +    +T++FA     +    +V 
Sbjct: 50  YPGANPKVIAQTVASPLEQEINGVEDMLYMSSQATSDGLMTLTITFAIGTDVDRAQTQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +   + +L  + ++  +VT        ++            +  S        D++  
Sbjct: 110 ARVDRASPRLPQEVQRLGIVTEKSSPDLTMVVHLTSPDKRYDMLYLSNYAALNVKDELAR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E              L    +P+++  L  + A++       N        G +    +
Sbjct: 170 IEGVGAVRLFGAGEYSLRIWLEPNKMAGLNLSPAQVLAAVREQNQQAAAGSLGAQPSGGA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           D    +       +                +    I                 +    + 
Sbjct: 230 DFQLLINVKGRLSTVE--------------EFEDIIINVGPQGELSRLRDVARVELGAST 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L             +  +     +      + L A         +         
Sbjct: 276 YALRSLLDNQDAIAIPVFQASGSNAIQISDDVRAKMSELSASFPDGLSYDIVYDPTVFVR 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           GS      T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S
Sbjct: 336 GSIEAVVKTLFEAILLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALS 395

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +        S   +           I  + +      + 
Sbjct: 396 LFGLVLAIGIVVDDAIVVVENVERNIGDGLSPIAATQKAMREVTGPIIATTLVLAAVFIP 455

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAI 504
             F  G   + +        + +  +A+
Sbjct: 456 TAFMAGLTGQFYKQFALTITISTFISAL 483



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/384 (10%), Positives = 105/384 (27%), Gaps = 10/384 (2%)

Query: 454  MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
             G   AY  IF       + T+  F                 + + +         +   
Sbjct: 663  AGIEDAYIAIFPPPPVQGLGTIGGFRLQIQDKGNLGYDELYKVTMQVMQKAWGTPELTGV 722

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
               Y+         + R       +++  +         S   +  +             
Sbjct: 723  FSSYQVNVPQLDLNIDRTKAKQQGVSLDEVFQTLQTYMGSTYVNDFNQFGRTYQVKMQAD 782

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            +        +   +  +       L S                         G       
Sbjct: 783  EQFRQTPEQISQIKVRNQQGDMVPLGSFINVTQVAGPDRVMHYNAYTTAELNGGPAPGYS 842

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELI--RKGIVGVIISAIAMLIYIWIRFKWY 691
              E        +        T        ++++    G++   +  + + + +  +++  
Sbjct: 843  SGEAQAAIEKILAETLPNGMTYEWTEITYQQILAGNAGLLVFPLVILLVFMVLAAQYESL 902

Query: 692  FALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                AI  +I + +   L    L+G + N+     ++ L+G +  + +++ +  ++   L
Sbjct: 903  SLPMAIILIIPMTLLSALSGVLLYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKE---L 959

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                ++  D I ++    L   + TS+A  + V+PM V+           M   +     
Sbjct: 960  QDEGMNVMDAILEATRLRLRPILMTSIAFIMGVVPM-VFSTGAGAEMRQAMGVAVFAGMI 1018

Query: 811  -SSIF--IAAPILLFIYDWRAKNA 831
              +IF  +  P+       R K  
Sbjct: 1019 GVTIFGLLLTPLFYHFMAKRQKTN 1042



 Score = 45.8 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 36/227 (15%), Positives = 78/227 (34%), Gaps = 17/227 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L++     I      G     +    +   S       + +   I     +
Sbjct: 273 ASTYALRSLLDNQDAIAIPVFQASGSNAIQISDDVRAKMSELSASFPDGLSYDIVYDPTV 332

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + E V   +   ++   +V V+               W  ++  +  + + +  T 
Sbjct: 333 FVRGSIEAVVKTLFEAILLVVLVVVLFLQT-----------WRASIIPLVAVPVSLVGTF 381

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K++ E 
Sbjct: 382 AFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIGD---GLSPIAATQKAMREV 438

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
            G  + T++      +P A      G     FA+ +     ++A +S
Sbjct: 439 TGPIIATTLVLAAVFIPTAFMAGLTGQFYKQFALTITISTFISALNS 485


>gi|84683694|ref|ZP_01011597.1| hypothetical protein 1099457000264_RB2654_20013 [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668437|gb|EAQ14904.1| hypothetical protein RB2654_20013 [Rhodobacterales bacterium
           HTCC2654]
          Length = 1042

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/527 (12%), Positives = 151/527 (28%), Gaps = 40/527 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++   +  +G          +  +++FP                           
Sbjct: 11  PVFATMVMIALMVVGAFS-----YSRLPVEQFPDVDFPVV---------AVVTSYPGATP 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    ++  S L        +     + + + F            V   +  + 
Sbjct: 57  EAVESDIIEPIEDSVSTLAGIDNIQSTALTGSSLVIIQFDLEVDSATAVQDVRDRVSQIG 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L  +     ++     ++ I+    + D++    + Q  E       +I         
Sbjct: 117 PLLPDNADDPRILRFDPSDLPILSIGVSSDELDIGTLTQVTE--DYIAKRISNLRGVGNA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   ++  E DP R   L    A++S      N                      V
Sbjct: 175 DVVGGRPREVLIEIDPDRQTALNVGIAEVSNAVAQENQDVPAG----AVTSGGQSQSVQV 230

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           E ++E                T +   DI     G +        N+   LA      +L
Sbjct: 231 EGRIE----------------TLRAFEDIIVARRGGQPIRLGDVANVTTGLAERDSLAML 274

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGIL-AAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                           +     E        M            V   N    + S    
Sbjct: 275 NGQDALAIDVLKTQGANTVDVAERVVEEVHKMNEDPQFEGIEISVLRDNSEPVIESFHSV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +      A L  I++F+ +   +  ++   ++ +++I T+  +  +G TL + ++  + L
Sbjct: 335 QSMIVEGAILATIIVFLFLNSWRSTVITGLTLPISIIATMTAIYAMGFTLNMMTLMALSL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ +D  I+V E I       +S   +   G       +  + ++ +   + + F  G
Sbjct: 395 SVGILIDDAIVVRENIVRHLHMGKSHIQAALDGTKEIGLAVLATTLSIVSVFLPVAFMEG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
              R    F IT+ +++LIS+F + ++   M           +    
Sbjct: 455 IIGRFFFQFGITVSVAVLISLFVSFTLDPMMSSVWYDPAADPNRKRG 501



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 75/244 (30%), Gaps = 15/244 (6%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             R +L  L   D    +    +        +           +   + I   V     +
Sbjct: 266 AERDSLAMLNGQDALAIDVLKTQGANTVDVAERVVEEVHKMNEDPQFEGIEISVLRDNSE 325

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
                   +   ++   I+  II              W   +    TL + I  T+    
Sbjct: 326 PVIESFHSVQSMIVEGAILATIIVF-------LFLNSWRSTVITGLTLPISIIATMTAIY 378

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGR 771
             G   N+  + A+   +G  ++D +VV    R+N+  +     S          E    
Sbjct: 379 AMGFTLNMMTLMALSLSVGILIDDAIVV----RENIVRHLHMGKSHIQAALDGTKEIGLA 434

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + T+++     LP+A   G +      F I ++  ++++   S  +   +    YD  A
Sbjct: 435 VLATTLSIVSVFLPVAFMEGIIGRFFFQFGITVSVAVLISLFVSFTLDPMMSSVWYDPAA 494

Query: 829 KNAR 832
              R
Sbjct: 495 DPNR 498



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 58/137 (42%), Gaps = 5/137 (3%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  +++L L +   LG   +F    N+ ++   + L+G    + +++ D    N 
Sbjct: 884  SFLQPLAIMSSLPLALIGVLGGLLVFDSTLNVMSIIGFIMLMGLVTKNAILLVDNA--NQ 941

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             +    ++  D +  +        V T++A    +LP+A+    G     S A  +  G+
Sbjct: 942  HVRDEGLNLYDALVIAGRTRFRPIVMTTLAMIFGMLPLALNIHGGTGQNASMAHAVIGGL 1001

Query: 806  VVAASSSIFIAAPILLF 822
            + ++  ++ +   IL +
Sbjct: 1002 ISSSLLTLVVVPVILTY 1018


>gi|302384204|ref|YP_003820027.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194832|gb|ADL02404.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 1090

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/527 (11%), Positives = 154/527 (29%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I  +G+        P   L ++P   P               + +    
Sbjct: 10  RPIFAAVLSVFITLVGIFA-----YPLLPLAQYPEIAPPT-------------ITINTAY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L +  +  +   +   EG+   S     +    IT++F      +N    V  
Sbjct: 52  SGASAETLAETVAAPIEQEVNGVEGMLYLSSSSTSDGTVSITVTFQPGTDLDNAQVLVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    ++  ++   ++   +++        + ++            D++   
Sbjct: 112 RVALAEPRLPEAVRQVGVIVNKQESGFLMILGLTSPGDVLNSDYIGNYATSTLRDRLLRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++        + ++      N        G        
Sbjct: 172 EGVGNVTVFGGGNYSMRVWIDPAKAAARGLNASDITTALRGQNIQAAAGSIGQPPFTT-- 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N    +  +++ G               +    +   +   R         +       
Sbjct: 230 -NAAAFQQPIQVQGRLST---------PEEFSEIVIKTDAEGRVTRIRDVARVELGAQDY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +   T E        L+  +       V          
Sbjct: 280 GIQGYFDGVRGVGIAIVQQPGANALGTAERVLAEVEKLKTEAPQGLSIGVPYNPTEFVAA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV++V+ + +   +  ++   +I + ++ T A+   LG ++   S+
Sbjct: 340 SVESVQHTLIEAVILVVLVVLIFLQSWRAAIIPIVAIPIALVATFAVQLALGYSINSLSL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVV 476
             +VL +G+ VD  I+V E +    R+  S   +            I    +   +    
Sbjct: 400 LALVLAVGIVVDDAIVVVENVERYVREGLSPKEAAYKSMEEVSGALIAIGLVLVSVFIPT 459

Query: 477 LFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           +F  G      R FA+T+  + ++S+F ++++  AM   +++  K  
Sbjct: 460 MFVPGIPGIFYRQFAVTIAAASVVSLFVSLTLSPAMAALLLKPHKPH 506


>gi|220904008|ref|YP_002479320.1| acriflavin resistance protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868307|gb|ACL48642.1| acriflavin resistance protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 1076

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/516 (12%), Positives = 137/516 (26%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I   GL+           +   P       +             +   
Sbjct: 11  RRPVATVLLTIAITLAGLVA-----FGLLPVAPLPETDFPVVM---------VRARMPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S       + L F   R  +  A  V   +  
Sbjct: 57  GAETMAATVATPLERALGRIAGVTEMTSSSSLGSTNVILQFDLDRNIDGAARDVQSAINA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L   P              I++     D +     +           +I       
Sbjct: 117 ARSTLPTMPSNPSYRKVNPAGAPIMILSVTSDVLTRS--QLYDAASTVLAQKISQLAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +     L  +  E  P  L +   + A +       N                 G   
Sbjct: 175 EVVVGGGALPAVRVEVIPDALSRAGLSMADVRRALAAANAYLPKGQIESEQNYWLVGAND 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +     G R         +      V +  
Sbjct: 235 QL--------------------HQADDYRSLVVGRKGDRVIRLEDVAQVKDSSQDVRNMA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V         I       +   T++    +   LR+         +          S   
Sbjct: 275 VSNGQPAVLLIVFRSPGANIIETVDRVKDMLPQLRSWLPESADLSLRMDRSLTIRASLHE 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + +  +   LV++V F+ +  G+   +   +  +++I T  ++ L G +L   S+  + 
Sbjct: 335 VEKSLMLAMALVVLVTFLFLRNGRATCIPAVAAPVSLIATFGVMYLCGYSLDNLSLMALT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I       +S   +   G      T+   +++ +     + F G
Sbjct: 395 VSTGFVVDDAIVVLENIVRRLELGESPMRAALRGAREVGFTVVSISLSLVAVFAPILFMG 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R F++ +  ++L+SM  +++    M   +
Sbjct: 455 GVVGRLFREFSVVLTTAVLVSMVVSLTTTPMMCARL 490



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 85/239 (35%), Gaps = 8/239 (3%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +R + L  V    +S Q       +       L+  +    + +     ++ +  ++   
Sbjct: 252 DRVIRLEDVAQVKDSSQDVRNMAVSNGQPAVLLIVFRSPGANIIETVDRVKDMLPQLRSW 311

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDI 704
           +P S   +  +      R  + +    ++++   +++  ++  +             + +
Sbjct: 312 LPESADLSLRMDRSLTIRASLHEVEKSLMLAMALVVLVTFLFLRNGRATCIPAVAAPVSL 371

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T G   L G   +  ++ A+    G+ V+D +VV + +   ++      S      + 
Sbjct: 372 IATFGVMYLCGYSLDNLSLMALTVSTGFVVDDAIVVLENI---VRRLELGESPMRAALRG 428

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
             E     V  S++      P+   GG V      F++ +   ++V+   S+    P++
Sbjct: 429 AREVGFTVVSISLSLVAVFAPILFMGGVVGRLFREFSVVLTTAVLVSMVVSL-TTTPMM 486


>gi|213967021|ref|ZP_03395171.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. tomato T1]
 gi|301385206|ref|ZP_07233624.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. tomato Max13]
 gi|302059599|ref|ZP_07251140.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. tomato K40]
 gi|302130147|ref|ZP_07256137.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. tomato NCPPB 1108]
 gi|213928343|gb|EEB61888.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. tomato T1]
          Length = 1036

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 159/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I          +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPRLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       A +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLADVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   ++ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLRSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRNQAVLLNIQRQPGANVIDVVDRIKALLPGITDNLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPMQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEDQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y    KG   + 
Sbjct: 515 DIYAGRLRWVLKHQPLTLLVALATLALTVLLYIAVPKGFFPVQ 557



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIVLVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPMQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.5 bits (105), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I ++        + T++AA     P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPETAIYEAALLRFRPILMTTLAALFGAFPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   ++F    I L+      + +R
Sbjct: 997  LLSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|162451077|ref|YP_001613444.1| hypothetical protein sce2805 [Sorangium cellulosum 'So ce 56']
 gi|161161659|emb|CAN92964.1| probable membrane protein [Sorangium cellulosum 'So ce 56']
          Length = 1105

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/565 (11%), Positives = 158/565 (27%), Gaps = 41/565 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   +  +G +        +  +DRFP+                    L   
Sbjct: 10  QRPVFAAMLTLALVVVGAVA-----YFKLGVDRFPAVDLPTV---------SVRTTLPGG 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + ++             + +  +F   R  ++ A  V   +Q 
Sbjct: 56  APEDVESEISEEIEAAVNTVEGIAELRSISTSGTSVVVATFNLDRDIDSAAQDVRDRVQA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L V     ++         ++    + D+ I    E + +++R    Q+  S    
Sbjct: 116 ALRRLPVGTDPPVIAKQDNDSTPVMSIALSADRSIRELTELADKLVRV---QLERSSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +  RL         +    V  N +        +          
Sbjct: 173 EVRVVGGQQRAIKIWLNADRLAAYGLPITAVRDAIVQQNANIPAGNVTGK---------- 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                 +      D+    +  R                     
Sbjct: 223 ----------EEERTLRTMGRIEDAGAFNDLVVATVDGRPVRVRDIGRAEDGTYEQRSLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            ++  +    IE      A L           V     G    +   
Sbjct: 273 RLDGKPTVVLDVVRQSGANTVAVIEAVKANLAKLSEQMPEDVRLEVIRDQSGYIYTALHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + + L   V+ + +   +  ++A  +I  +V+ T  ++ LL  TL   ++  +V
Sbjct: 333 INVHLVLGSILACAVVLLFMRSWRSTIIAGVAIPTSVVATFGMMWLLDFTLNSVTMLALV 392

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L +G+ +D  I+V E I      K    F +           +  + ++ ++  V + F 
Sbjct: 393 LMVGIVIDDAIVVLENIFRFVEEKKMDSFEAARAATQEIGLAVLATTLSLVVIFVPVSFM 452

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
              + R    F IT  ++IL+S+  + ++   M   ++R +  ++               
Sbjct: 453 SSISGRFLFQFGITATVAILVSLLVSFTLTPMMSARLLREEGARAHGAGEGGPGGGGEAA 512

Query: 538 IAIQFMRARFWGVGISILFSICSIC 562
               F          ++ F++    
Sbjct: 513 TREGFYGRLEARYTRALAFAMRHRA 537



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 10/234 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR    +             +    V L            V+E VK  + ++        
Sbjct: 255 VRDIGRAEDGTYEQRSLARLDGKPTVVLDVVRQSGANTVAVIEAVKANLAKLSEQMPEDV 314

Query: 654 TEIVGPKISRELIRKG----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              V    S  +        +  V+ S +A  + +     W   + A   +   +  T G
Sbjct: 315 RLEVIRDQSGYIYTALHEINVHLVLGSILACAVVLLFMRSWRSTIIAGVAIPTSVVATFG 374

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L     N   + A++ ++G  ++D +VV + +     +    +   +    +  E  
Sbjct: 375 MMWLLDFTLNSVTMLALVLMVGIVIDDAIVVLENIF--RFVEEKKMDSFEAARAATQEIG 432

Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              + T+++  +  +P++      G  +  F I     I+V+   S F   P++
Sbjct: 433 LAVLATTLSLVVIFVPVSFMSSISGRFLFQFGITATVAILVSLLVS-FTLTPMM 485



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 65/170 (38%), Gaps = 9/170 (5%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I   ++S + M + +  +F+     +  + +L L +   L      G   NL +    L 
Sbjct: 915  IWAFLLSIVLMYMILASQFESLVHPVTILLSLPLSVPFALLSLWATGNTLNLYSALGFLV 974

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L G    + ++  D M    KL    +   + I ++  + L   + T++A    +LP+ +
Sbjct: 975  LFGVVKKNSILQVDHMN---KLRGEGVPREEAILQANRDRLRPILMTTLALVAGMLPLWL 1031

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD--WRAKNARI 833
                G     + A+ +  G  ++   ++ +       + D     +  R+
Sbjct: 1032 GTGPGAEERQTIAVVVIGGQSLSLLLTLIVTPVSYSLLDDLARSERWGRV 1081


>gi|291283316|ref|YP_003500134.1| Multidrug resistance protein mdtB [Escherichia coli O55:H7 str.
           CB9615]
 gi|226237427|dbj|BAH46949.1| multidrug efflux system, subunit B [Escherichia coli O55:H7]
 gi|290763189|gb|ADD57150.1| Multidrug resistance protein mdtB [Escherichia coli O55:H7 str.
           CB9615]
 gi|320657498|gb|EFX25296.1| multidrug efflux system subunit MdtB [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 1040

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LTVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|162145976|ref|YP_001600434.1| multidrug resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161784550|emb|CAP54085.1| putative multidrug resistance protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1021

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 87/732 (11%), Positives = 205/732 (28%), Gaps = 44/732 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  +I   G+              ++P+      +                
Sbjct: 8   LRRPVLAIVVTILIVLFGI-----KGFNSIATRQYPTLETSTIL---------ISTRYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D + GF+     E  + ++       +  Q  + +T+    +         V   + 
Sbjct: 54  ASSDLMQGFVTQPISEAVASVEGIDYLSSTTTQGLSVVTVRMMLNYDSMRALTDVMSKVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L       ++  T+    ++               E S  I R     +   E  
Sbjct: 114 AVKYRLPEGAYDPVIKRTSGGFTAVAYIGFAST--TRPLYEISDYIHRVAAPMLSGIEGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +        + +    DP +L     T   ++      N           +   +    
Sbjct: 172 SEISYFGEQRLSMRLWLDPEKLAANDMTGEDVARAIRENNFQAAPGRIRGVYTISNINLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   E   + L                 I   ++G         D   +   +    
Sbjct: 232 TDLKTVEEFRDMVLRSTGGR----------VIRVRDIGRAELGPDNTDTSSQTSTLRPPN 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              T               +    I     +   L+A   P     V          S  
Sbjct: 282 GKPTPRPSIFVGLEPSPTGNPLTIISRLNEIMPKLKATLPPGIDVRVPYETAHFIQASID 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      +V++V+++ +   +  +V   +I L+++  + L+   G +L L ++  +
Sbjct: 342 EVTETFIEALLIVILVIYLSLGTVRAVIVPIATIPLSMLGAVGLMYTFGFSLNLLTLLAM 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     + +S F +  +G       +    +T       + F 
Sbjct: 402 VLSIGLVVDDAIVVIENVHRHIEEGKSPFDAALLGAREVAGPVVAMTLTLTAVYAPIAFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIP 535
           G   G   R FA+T+  S+++S   A+++   M   +++ K+ +     +      F+  
Sbjct: 462 GGLTGTLFREFALTLAGSVIVSGVVALTLSPLMSAKLLKAKEKEGFMERMAERVFGFMTA 521

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +     R   V +     I  +     H     +       +   A +    + + 
Sbjct: 522 RYETVLDFSLRHRWVPLGTAAVIFLLIPAMLHVSQSELAPNEDQDIVYTAVKAPQYANLH 581

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                 Q             +           +      L+   K+      +       
Sbjct: 582 YVETYAQTLYEKMSEIPEGHSHWQMNGIDGIANSVGGVNLDDWGKRKRNADQIQMDLQQR 641

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
           +   + +   + +    +  S   + + + +R    +                G  +   
Sbjct: 642 VASIQGTSVFVFQMG-ALPGSTGGLPVQMVVRSDDSY------------RNVFGVMSHLR 688

Query: 716 IEFNLTAVAAVL 727
            E + + + AV+
Sbjct: 689 DEASKSGLFAVV 700



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 51/387 (13%), Positives = 116/387 (29%), Gaps = 9/387 (2%)

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           + D    R              +T    +     +   A  M   I      +    + +
Sbjct: 123 AYDPVIKRTSGGFTAVAYIGFASTTRPLYEISDYIHRVAAPMLSGIEGVSEISYFGEQRL 182

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
            + +    +  + +                Q    R  GV      ++ +         +
Sbjct: 183 SMRLWLDPEKLAANDMTGEDVARAIRENNFQAAPGRIRGVYTISNINLNTDLKTVEEFRD 242

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
             +   GG  + V      +L    ++  S              +  +            
Sbjct: 243 MVLRSTGGRVIRVRDIGRAELGPDNTDTSSQTSTLRPPNGKPTPRPSIFVGLEPSPTGNP 302

Query: 631 QTRV--LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            T +  L  +  K+   +P               +  I +     I + + +++ I++  
Sbjct: 303 LTIISRLNEIMPKLKATLPPGIDVRVPYETAHFIQASIDEVTETFIEALLIVILVIYLSL 362

Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 +  I T+ L +   +G    FG   NL  + A++  IG  V+D +VV + +   
Sbjct: 363 GTVRAVIVPIATIPLSMLGAVGLMYTFGFSLNLLTLLAMVLSIGLVVDDAIVVIENVH-- 420

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +      S  D       E  G  V  ++       P+A  G   G++   FA+ +A  
Sbjct: 421 -RHIEEGKSPFDAALLGAREVAGPVVAMTLTLTAVYAPIAFMGGLTGTLFREFALTLAGS 479

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++V+   ++ ++  +   +   + K  
Sbjct: 480 VIVSGVVALTLSPLMSAKLLKAKEKEG 506



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 82/233 (35%), Gaps = 10/233 (4%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            + +       F  + +   +     G ++         K            Q+      +
Sbjct: 793  VDVEPNRLPQFGQQNSATFQAILAKGVTMGDAVSFLKAKAAEFPPGYSYDWQSDSRQYVQ 852

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFN 719
                L    I   + + IA+ + + +++  +   +  + ++ L +   L   AL     N
Sbjct: 853  EGNAL----IFAFLFALIAIYLVLSVQYNSFTDPVIILVSVPLSVFGALIPLALGVTTLN 908

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            +     ++TLIG      +++ +   + +  +  ++  R  I+ +        + T+ A 
Sbjct: 909  IYTEIGLITLIGLVSKHGILMVEFANEIL--HRDNVDRRTAIETAAAIRFRPIIMTTAAM 966

Query: 780  FISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             + + P+ +    G +        +  G++V  + ++F+   +   I   R+K
Sbjct: 967  VVGLAPLVIATGAGANSRFGLGTVIVVGMIVGTTMTLFVLPSVYTVIRPRRSK 1019


>gi|330875079|gb|EGH09228.1| multidrug RND efflux transporter, permease MdtB [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 1036

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 159/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I          +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPRLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       A +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLADVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   ++ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLRSPEEYANLILAYKNGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRNQAVLLNIQRQPGANVIDVVDRIKALLPGITDNLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEDQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y    KG   + 
Sbjct: 515 DIYAGRLRWVLKHQPLTLLVALATLALTVLLYIAVPKGFFPVQ 557



 Score = 80.9 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIVLVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.5 bits (105), Expect = 0.037,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I ++        + T++AA     P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPETAIYEAALLRFRPILMTTLAALFGAFPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   ++F    I L+      + +R
Sbjct: 997  LLSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|255036964|ref|YP_003087585.1| acriflavin resistance protein [Dyadobacter fermentans DSM 18053]
 gi|254949720|gb|ACT94420.1| acriflavin resistance protein [Dyadobacter fermentans DSM 18053]
          Length = 1037

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 82/637 (12%), Positives = 185/637 (29%), Gaps = 41/637 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I   G L           +  FPS  P                     
Sbjct: 9   KRPVLAIVMNLLIILFGFL-----GYKFLGMREFPSIDPPVV---------SIRTSYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + ++       +  Q  ++IT+ F      E  A+ V   +  
Sbjct: 55  NADIIESQITEPLEKQLNSIEGIKSISSTSSQGTSQITVEFDIGVDMERAANDVRDKVGS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  L +D     +V+  +     ++            +E S         ++   E   
Sbjct: 115 ASRTLPLDIDGPPVVSKADANSEPIIV-LTFTSNTRSHLEVSDYAENVIAQRLQTIEGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     +    +    DP ++  L  TT  +       N                     
Sbjct: 174 EIRIFGQKKYAMRIWMDPVKMAALGITTQDVKVALDKENVELPSG--------------K 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L  D  E++   +            +   ++       +        +            
Sbjct: 220 LAGDNTELTVKTIGRFRT------EEDFNEMIIKNSATQTVHLKDIGSATLGPENEETIL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +     S     +     +      A ++              N      S   
Sbjct: 274 RLDNVPMIGLAISPMPGANYLDIAKEVNKRIAAIKKELPKDYELDTLIDNTIFVERSIEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+I++++              I +++I T  ++ ++G ++ + ++  IV
Sbjct: 334 VGETLLIAIVLVVIIIYLFFRDWLIAFRPLIDIPVSLIGTFFIMYIMGFSVNVLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I ++  +  S   +   G +     +  ++IT     + + F  
Sbjct: 394 LATGLVVDDGIVVTENIFKKIEQGMSPIEAAIKGSNEIIFAVLSTSITLASVFLPVIFME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI---P 535
              G   R F I +  ++LIS F ++++   +  +++R    KS        FF      
Sbjct: 454 GFVGKLFREFGIVISAAVLISAFVSLTLTPMLNAYLVRKTHKKSWFYEKTEPFFEKITAN 513

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              A++      W     +  ++  I        +            +    P   S   
Sbjct: 514 YGNALERFLNMRWAAVPIVAVTLGMIWFFGKDLQSELAPLDDRNWFRINMTTPEGSSFEF 573

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           ++     +G++   +  G+K  ++          A  
Sbjct: 574 TDRYVQNVGNMLMDSMPGKKGLMLITSPGNSGLGAAN 610



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 63/152 (41%), Gaps = 7/152 (4%)

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           Y++ R  W  A   +  + + +  T     + G   N+  + A++   G  V+D +VV +
Sbjct: 350 YLFFR-DWLIAFRPLIDIPVSLIGTFFIMYIMGFSVNVLTLLAIVLATGLVVDDGIVVTE 408

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
            +    K     +S  +   K  NE +   + TS+      LP+     + G +   F I
Sbjct: 409 NI---FKKIEQGMSPIEAAIKGSNEIIFAVLSTSITLASVFLPVIFMEGFVGKLFREFGI 465

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++  ++++A  S+ +   +  ++     K +
Sbjct: 466 VISAAVLISAFVSLTLTPMLNAYLVRKTHKKS 497



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 71/193 (36%), Gaps = 7/193 (3%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
                +I + +   TIQ       +   E     +    ++ + +   +  +F+ +     
Sbjct: 823  AAMDRIRDKLNDETIQTALSGSSRDYAESSSNTMFSFFLALVLIYFILAAQFESFVDPFI 882

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             + T+ L I   +     F    N+ +   ++ LIG    + +++ +      +L     
Sbjct: 883  IMFTVPLAIGGAVFSLWFFDQTLNIFSQIGMIMLIGLVTKNGILIVEFAN---QLREQGR 939

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
            S R+   ++        + TS+A  +  LP+A+     G    S  I +  G++ +   +
Sbjct: 940  SIREAALEAATLRFRPILMTSLATILGALPIAMALGSAGRSRMSMGIVIMGGLLFSLVLT 999

Query: 813  IFIAAPILLFIYD 825
            +++   I  F   
Sbjct: 1000 LYVIPAIYTFFSR 1012


>gi|241205990|ref|YP_002977086.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859880|gb|ACS57547.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 1108

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/669 (11%), Positives = 196/669 (29%), Gaps = 42/669 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  IG+            + RFP+                 ++     
Sbjct: 9   RNPIAPLLAFCLLVFIGM-----QSFNALPITRFPNIDVPLV---------SINVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    ++  + F      E         +  
Sbjct: 55  SPAELEMQVTKEIEDAVASITGIDEIQSTVTDGSSQTVVMFRMEVPTEQAVQDTKDAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    +  ++     +  +I     +         E S  +       +       
Sbjct: 115 IRSDLPTTAEAPIVSKVDVEGQAIQTFAVSSPA--MSLEELSWFVDDTIKRSLQGQAGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E  P +L     T A ++      N         V     +     
Sbjct: 173 RVDRYGGAEREVRIELTPDKLNAYGITAASVNQQLRGTNIDLGSGRGQVAGSEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  +++   +      F   +   V+  +++E  +   F  T               
Sbjct: 233 DARNVADLANTTIGLPNGRFVKLSDLGVIKDTYEEPKSFSRFNDTP-------------- 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +   ++               P     + + +V    G+   
Sbjct: 279 -------VVTFGVFRSKGASEVSVAETVAQNLDKVRTENPNVKIELIDDSVYFTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  L++  ++ L+ I T  ++ ++G +L L S   + 
Sbjct: 332 AIHTLLEGALLAVIVVFLFLRNWRATLISAIALPLSAIPTFWIMDMMGFSLNLVSFLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    +  ++ + +           +  +  T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIKMGKTPYRAAIEAADEIGLAVIATTFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F +T+  S+  S+  A  I   M  +++R +       +           +
Sbjct: 452 GIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMRAEDAMEDHHDNDGLLMRGYTRL 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYG--IDFKGGIQLGVLANRPVDLSVVRS 596
                   +      I+     +  +       G  +  +   ++ +    P +  +  +
Sbjct: 512 IRGTTGRWYTRYATLIVAFAFLVGSVLLLMQVPGSFLPPEDASRIVLSVELPPNARLDDT 571

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              +  I D        +  F++      GD   +   + +   K+ + +    + +   
Sbjct: 572 EKTTDAIYDRVKDINGVDSVFVLGGASPKGDLELRRATITLALDKLDQSLVKKMVNDVIG 631

Query: 657 VGPKISREL 665
             P I  +L
Sbjct: 632 RIPVIGPKL 640



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 7/233 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       SF  F+        +    G S                    +       
Sbjct: 260 VIKDTYEEPKSFSRFNDTPVVTFGVFRSKGASEVSVAETVAQNLDKVRTENPNVKIELID 319

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +       I  ++  + +A+++       W   L +   L L    T     + G
Sbjct: 320 DSVYFTYGNYEAAIHTLLEGALLAVIVVFLFLRNWRATLISAIALPLSAIPTFWIMDMMG 379

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL +  A+    G  V+D +V  + +    +      +      ++ +E     + T
Sbjct: 380 FSLNLVSFLALTLATGILVDDAIVEIENI---ARHIKMGKTPYRAAIEAADEIGLAVIAT 436

Query: 776 SMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +       +P++   G        F + +AF +  +   +  I   +  ++  
Sbjct: 437 TFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMR 489



 Score = 46.6 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 6/121 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + +L L I        L     ++  +  +L L+G    + +++ D   +  
Sbjct: 897  DVIQPFTILFSLPLAIGGVAAGLILTSNPLSMPVMIGILMLMGVVTKNAILLVDFAIEMR 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +   + + ++  +     + TS+A    +LP A+    GGS     AI +  GI
Sbjct: 957  HQ---GMPRVEAMVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGI 1013

Query: 806  V 806
            +
Sbjct: 1014 I 1014


>gi|134295222|ref|YP_001118957.1| acriflavin resistance protein [Burkholderia vietnamiensis G4]
 gi|134138379|gb|ABO54122.1| acriflavin resistance protein [Burkholderia vietnamiensis G4]
          Length = 1102

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/583 (12%), Positives = 157/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+ +                  L    
Sbjct: 10  RPVATTLLALGVALAGLFAFIRLPVSPLPQVDFPTIL--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIVLQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++    +    S   +            +   +   Q
Sbjct: 116 RADLPTSLKSNPTYRKVNPADSPIMV-VALTSETSSPAKLYDAASTVLQQSLSQIDGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VAISGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEFGPTHYQLYTNDQASRASQYSDLVVAYRNGAAVRLSDLSDVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIETIDRVNAALPQLTASLPADITVTPVLDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG ++   S+  +++
Sbjct: 335 ERTLLIAISLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENITRHIENGKPRLQAAFDGAREVGFTVLSMSLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R       +             + 
Sbjct: 455 IVGRLFREFALTLSLAIGVSLAVSLTVTPMMCARLLREAHDVHEEGRIGRFLERCFARMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +   +L  +     +  +   Y +  KG     
Sbjct: 515 RGYERTLSWALRRPLLVLLILFATVGLNVYLYIVVPKGFFPQQ 557



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/148 (19%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + IS + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAISLVVMVVFLFLR-NWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---TRHIENGKPRLQAAFDGAREVGFTVLSMSLSLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+ + S+ +  
Sbjct: 456 VGRLFREFALTLSLAIGVSLAVSLTVTP 483



 Score = 41.2 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 88/215 (40%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  + + + +  I    TI  +     +  ++      + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQAIYETMARIGVPPTIVGSFQGTAQAFQQSTNNQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + + ++ +   +  ++TL       L    L   EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGVLYESYIHPITILSTLPSAGVGALLALLLCKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      +      S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRHAHK--SSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGHGDGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++++   +++    + L++   R
Sbjct: 1047 LRAPLGIAIAGGLIMSQVLTLYTTPVVYLYMDRLR 1081


>gi|70730227|ref|YP_259966.1| multidrug RND efflux transporter, permease MdtB [Pseudomonas
           fluorescens Pf-5]
 gi|68344526|gb|AAY92132.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas fluorescens Pf-5]
          Length = 1032

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 71/637 (11%), Positives = 165/637 (25%), Gaps = 38/637 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YRLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + +TL F+     +    +V   +   
Sbjct: 56  PDVMTSAVTAPLERQFGQMPGLTQMASTSSGGASVLTLRFSLDINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPKDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKIAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       A +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANGLNLADVRALIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN    + K   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLTSPKDYAELILAYNNGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +           V          S    
Sbjct: 275 ANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIALVVMVTFLFLRRASATIIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRFIEEGDSPMQAALKGARQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +                 D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKPEEQGRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             + R   W +    L  + +I  L      Y +  KG   +             +S   
Sbjct: 515 ESYGRKLQWVLKHQFLTLMVAIGTLGLTVFLYMVVPKGFFPVQDTGVIQGISEAPQSVSF 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           +              ++  V+              L 
Sbjct: 575 AAMSQRQQDLAKIILQDPAVQSLSSYIGVDGDNATLN 611



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 67/162 (41%), Gaps = 9/162 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+ ++++R +    +     + L +  T G   L G   N   + A+    G+
Sbjct: 340 IAIALVVMVTFLFLR-RASATIIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      S      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRFIEEGDSPMQAALKGARQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           V+      FAI +A  I+++   S+ +   +   +     K 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKP 496



 Score = 46.2 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I ++        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERHQGMAPEQAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      +  +
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLGRRFGK 1023


>gi|29348350|ref|NP_811853.1| multidrug resistance protein MexB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29340254|gb|AAO78047.1| multidrug resistance protein mexB (multidrug-efflux protein)
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1058

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/697 (10%), Positives = 174/697 (24%), Gaps = 55/697 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P               + +   
Sbjct: 8   KRPVMAISISVLILAIGLISLF-----TLPVEQYPDIAPPT-------------VYVSAS 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +      L   +        I   +       I + F      +  A  V 
Sbjct: 50  YTGADAEAVMNSVIMPLEESINGVEDMMYITSSASNAGLAIIQVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 110 NRVAKAQGLLPAEVTKVGVSTMKRQTSFLQIGALVCTDGRYDQTFLANYLDINVIPQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDITGVLGEQNIEAPTGSLGESSQNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +                ++      
Sbjct: 229 Q----------------FTMKYRGRLKSVEEFQNTVVRSREDGSILRLKDVADVELGTMT 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +          +    +     
Sbjct: 273 YSFRSEMDSQPAVLYMIFQTAGSNATAVNKEITAQMERMEKNLPEGTEFVTMMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 333 ASIHNVVETLIIAIILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIVSCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +   R  
Sbjct: 453 PVTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 533 -----------LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                             + F+R R+          +  + L+ T           G+ +
Sbjct: 513 AAYNASFNAVLGKYKKGVMYFIRHRWMVWTSLAATIVLLVYLMSTTKTGLVPQEDQGVIM 572

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             ++  P       + +       +           +       G   +   ++  +K  
Sbjct: 573 VNVSISPGSTLEETTKVMDRLENILKDTPEIEHYARVAGYGLISGQGTSYGTIIVRLKDW 632

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                                + +    I     + I
Sbjct: 633 SERKGKEHGSDAVASRLNAQFQSIKEAQIFSFQPAMI 669



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 81/291 (27%), Gaps = 8/291 (2%)

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                    +         ++      Y +D +    + V     +        L+ +   
Sbjct: 750  YCGGAYISNYNQYGKVYRVMMQASPEYRLDEQALNNMFVRNGTEMAPVSQFVTLKQVLGP 809

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            + + +                  S    +V+E V  +   I                   
Sbjct: 810  ETANRFNLYSTITANVNPADGYSSGEVQKVIEEVAAESLPIGYGYEYGGMAREEASSGGA 869

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 I  + I  I  LI   +   +      I ++   +  +  F  + G+E N+    
Sbjct: 870  QTVF-IYAICIFLIY-LILACLYESFLVPFAVIFSVPFGLMGSFLFAKILGLENNIYLQT 927

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ LIG      +++ +     ++     +   +    +    L   + T +     +L
Sbjct: 928  GVIMLIGLLAKTAILITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGML 984

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+      G +   S    +  G+ V   + +F+     +     + K  +
Sbjct: 985  PLMFSSGAGANGNSSLGTGVVGGMAVGTVALLFVVPVFYIIFEYLQEKIRK 1035



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 359 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 419 DAGYK--SPYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496


>gi|300867355|ref|ZP_07112012.1| preprotein translocase subunit SecD [Oscillatoria sp. PCC 6506]
 gi|300334661|emb|CBN57180.1| preprotein translocase subunit SecD [Oscillatoria sp. PCC 6506]
          Length = 464

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 120/491 (24%), Positives = 208/491 (42%), Gaps = 64/491 (13%)

Query: 41  KNRISLGLDLRGGSHLVLEV----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQ 95
           K    LGLDL+GGS L ++V    +        L+     + + +   G+    ++   +
Sbjct: 24  KVPPRLGLDLQGGSQLTIQVKTTPEIPKIEQQMLEDVQRIVENRVNGLGVSEAVVQTVGE 83

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           ++I +        +     +    Q    +     +  L +    +   +       +  
Sbjct: 84  DQILVQLPGVSDPQQAERVLGGTAQLDFREQLPGTEAQLGIERQVQAELLAKQVELKNSG 143

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
              AIE++   +++  + I                            +        +   
Sbjct: 144 NQAAIEENQAALKRSNEAI------------------------AQLYKVTGLNGKNLKDA 179

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
           +  P      +   +RF          +   +  +G  L                     
Sbjct: 180 QAEPTQGGNNWKVVLRFDPPGGELFAQMTKNLAGTGRTLGIYL----------------- 222

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
                                +L    +        I  G  +I+G+FT++ A  LA  L
Sbjct: 223 ------------------DENLLSSPTVGVQFAESGITGGNVEITGSFTVQEANDLAVQL 264

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           R G+LP+ + I+E R VGA LG DSI     A + GL L+++FMI  Y   G++AD S+ 
Sbjct: 265 RGGALPVPVEIIENRTVGATLGRDSIQSSIYAGLGGLTLVLIFMIAYYRLPGVIADVSLL 324

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           +  +LT A   LLG TLTLP IAG +L IG+AVD+N+L+ ER REE R  ++++ S++ G
Sbjct: 325 IYSLLTWACFVLLGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAGKTLYRSVESG 384

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           F RA+S+I D N+T +IA   LF+ G G V+GFA+T+ L + +SMFTAI+  R +++ ++
Sbjct: 385 FYRAFSSILDGNVTTVIACAALFWLGSGLVKGFALTLALGVAMSMFTAITCSRTLLLVVL 444

Query: 516 RYKKMKSIDIN 526
            + +++     
Sbjct: 445 SFPELRKPQWF 455



 Score =  134 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 88/234 (37%), Gaps = 4/234 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   +   +      E           G    Q      V+ +   +     I     V
Sbjct: 222 LDENLLSSPTVGVQFAESGITGGNVEITGSFTVQEANDLAVQLRGGALPVPVEIIENRTV 281

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ I+  I   +     +LI++   ++    + A  +L++    T   F L G+ 
Sbjct: 282 GATLGRDSIQSSIYAGLGGLTLVLIFMIAYYRLP-GVIADVSLLIYSLLTWACFVLLGVT 340

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      +    ++          +  ++
Sbjct: 341 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKTLYRSVESGFYRAFSSILDGNV 397

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I+   +   G  ++  FA+ +A G+ ++  ++I  +  +LL +  +     
Sbjct: 398 TTVIACAALFWLGSGLVKGFALTLALGVAMSMFTAITCSRTLLLVVLSFPELRK 451


>gi|220912783|ref|YP_002488092.1| preprotein translocase subunit SecD [Arthrobacter chlorophenolicus
           A6]
 gi|219859661|gb|ACL40003.1| protein-export membrane protein SecD [Arthrobacter chlorophenolicus
           A6]
          Length = 585

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 107/529 (20%), Positives = 195/529 (36%), Gaps = 37/529 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+++  +    L   L            P         L LDL GG+ ++L   
Sbjct: 7   KKPGLRVLVWLGVIIAALTAVLAGGTVAGQASWSP--------KLALDLEGGTQMILAPK 58

Query: 62  ED---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            +   D     L      +R  +   G+    +     +  +            D +   
Sbjct: 59  VEGGSDINEEQLNQAVAIIRQRVDGSGVAEAEISTQSGRNVVVSLPGTPSTATRDLIQAS 118

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI---G 175
                  + ++    ++   +      +          S     + EI R+         
Sbjct: 119 ADMNFRPVLLNGAGAVVPEESRAPEDQLPKPTAAPANSSDINWITPEIYREFEALDCDNA 178

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            +E   +   +  ++   P       ++ +LG       + V  +   +    G      
Sbjct: 179 SAEKAERSDPTKPLVTCEPATDTSPAIKYILGPVEVKGSNIVTSSFQLQQGAQGAVTNDW 238

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +   Q+  E                      K                  +  +     A
Sbjct: 239 AVNIQFNDEGTA-------------------KFKEVTERLNQFYVAAGGESGTDPKAQFA 279

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +VLD +V++AP     I  G+ QI+G FT +TA  L+  LR G+LPI   I  E+ + A 
Sbjct: 280 IVLDDQVISAPRALAVITDGRPQITGGFTEQTAKALSDQLRFGALPISFEIQSEQQISAT 339

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT-- 413
           LG + +  G  A + GL+L+V++ +  Y   G V   S+ +  +LT   +++LG T    
Sbjct: 340 LGGEQLRMGLLAGLIGLLLVVVYSLFQYRALGFVTIASLVVAGVLTYLAIAILGWTENYR 399

Query: 414 --LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
             L  +AGI++ IG   DS I+  ERIR+E R+ + +  +++ G+ RA  T+  S    L
Sbjct: 400 LSLAGVAGIIVAIGQTADSFIVYFERIRDELREGRGLVSAVENGWKRAKRTVLASKAVNL 459

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +A +VL+F   G VRGFA T+GL+ +  +          +  + R +  
Sbjct: 460 LAALVLYFVAVGNVRGFAFTLGLTAIADLIVVFMFTHPTLQLLARTRFF 508



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 54/153 (35%), Gaps = 10/153 (6%)

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE----FNLTAVAAVLTLIGYSVN 735
           +++Y   +++       I +L++    T    A+ G       +L  VA ++  IG + +
Sbjct: 359 VVVYSLFQYR-ALGFVTIASLVVAGVLTYLAIAILGWTENYRLSLAGVAGIIVAIGQTAD 417

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS-MAAFISVLPMAVWGGSVI 794
             +V ++R+R  ++           ++        R+V  S     ++ L +       +
Sbjct: 418 SFIVYFERIRDELRE---GRGLVSAVENGWKRA-KRTVLASKAVNLLAALVLYFVAVGNV 473

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             FA  +    +           P L  +   R
Sbjct: 474 RGFAFTLGLTAIADLIVVFMFTHPTLQLLARTR 506


>gi|124021980|ref|YP_001016287.1| RND family multidrug efflux transporter [Prochlorococcus marinus
           str. MIT 9303]
 gi|123962266|gb|ABM77022.1| putative RND family multidrug efflux transporter [Prochlorococcus
           marinus str. MIT 9303]
          Length = 1145

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 68/522 (13%), Positives = 153/522 (29%), Gaps = 33/522 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I   GL+       P   ++  P   P              + +    +
Sbjct: 10  RPVLATVCSLLIVIAGLISI-----PILPVEMLPDIAPPTVK---------VNSIYTGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + ++    +   S     + I ++F      +     V   +  
Sbjct: 56  AESVEQGVTSVLEQQINGVENMDYLTSSSSADGVSSIAVAFESGSNSDINQVNVQNRVAL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQIGISE 178
              +L  + +K  +         ++L     +            S  +     D++   +
Sbjct: 116 AEPQLPEEVRKAGVSVNKASNSILLLYNFVSEDPSNIEYSVETISGLLDLGLTDEVKRVK 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +        +      D  +L     T+A +       N        G     +   
Sbjct: 176 GVGEVTYFGNRKVAFRLWLDNEKLEVFGLTSADVMGAIESQNRLVPAGSIGGEPSAEGQI 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             +     V+++G  ++                +   + G    F      +    +   
Sbjct: 236 FTF----PVQLNGRLVSIGDFENM--------VVRTTDDGGLVRFSDVGRVVLGGESYSN 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L A           +  +          +     A             N      S
Sbjct: 284 SATDLQAVPSVSMAVYQLSGSNALEVSNGVKDVLEEFTAKMPVGMKMEKIYDNTDFINAS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +    +      LV+++LF+ +   K  LV   +I + ++ T +L+   G +L   ++ 
Sbjct: 344 INGVTNSLRDSIILVVLILFVFLQNWKATLVPGIAIPVALVGTFSLVLGFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IATVVL 477
           G+VL  GL VD  I V E    +     +   +        +S +  +++    +   VL
Sbjct: 404 GLVLATGLVVDDAITVIEDTSTKKASGMTALEAAKSTMDELFSAVIATSLVLFSVFLPVL 463

Query: 478 FFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           FF G  G   + FA T+  +I IS F A++    +   ++  
Sbjct: 464 FFPGATGSIYKQFAATIIFAIAISTFNALTFSPMLSALLLGR 505



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 69/239 (28%), Gaps = 8/239 (3%)

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
            I           +       + V       L         +  G+    +    +    
Sbjct: 234 QIFTFPVQLNGRLVSIGDFENMVVRTTDDGGLVRFSDVGRVVLGGESYSNSATDLQAVPS 293

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA-- 677
                   S +    +    K + E          ++     + + I   I GV  S   
Sbjct: 294 VSMAVYQLSGSNALEVSNGVKDVLEEFTAKMPVGMKMEKIYDNTDFINASINGVTNSLRD 353

Query: 678 -IAMLIYIWIRF--KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            I +++ I   F   W   L     + + +  T      FG   N   +  ++   G  V
Sbjct: 354 SIILVVLILFVFLQNWKATLVPGIAIPVALVGTFSLVLGFGFSLNQLTLFGLVLATGLVV 413

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +D + V   +        + ++  +    +++E     + TS+  F   LP+  + G+ 
Sbjct: 414 DDAITV---IEDTSTKKASGMTALEAAKSTMDELFSAVIATSLVLFSVFLPVLFFPGAT 469



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 17/207 (8%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R     G   A     + +          +              E+    +  VI +
Sbjct: 909  NLYRSIKIEGSPAAGKSSGQAINGMKELFAAQNLNSLGFDWTGISREEVKAGALAVVIFA 968

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +++Y+ +      +   L  + T+   +   L F AL G   N+ A   ++ LIG +
Sbjct: 969  LGILVVYLVLAAQYESYADPLIILMTVPTAMLGALLFLALRGEVLNIYAQVGLVMLIGLA 1028

Query: 734  VNDKVVVYD----RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
              + +++ D    RM +        ++  +   ++    L   + T++++    +P+ + 
Sbjct: 1029 AKNGILIVDLANQRMAE-------GVTALEAARQAAKSRLRPIIMTAISSLFGFMPLVLA 1081

Query: 790  GGSVIG---SFAIPMAFGIVVAASSSI 813
             G+      S    +  G++VA   S+
Sbjct: 1082 SGAGARSQASLGTVVFGGLLVATFLSL 1108


>gi|91975486|ref|YP_568145.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
 gi|91681942|gb|ABE38244.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
          Length = 1058

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 82/683 (12%), Positives = 193/683 (28%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    ++   ++  +G +      + +      P                   +     
Sbjct: 11  RHPLPSIVFSIILLALGWISFTKLAVTRLPSADIPVIS--------------VAVAQFGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ FA     +   + V   +  
Sbjct: 57  APAELEAQVTKTIEDGVSGVEGVRHIASSVTDGLSVTTIQFALETNTDRALNDVKDAITR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  +  + L+       + IV              + S  +       +       
Sbjct: 117 VRSNLPQNVTEPLIQRVDVIGLPIVTYAAISPGKTPE--QLSWFVDDVVKRALQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL+    T   +S      N    G    +     +     
Sbjct: 175 QVERIGGVEREILVSLDPDRLKAAGLTALDVSRRLRGTNVDLAGGRAEIGKNDQAIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +++G  ++                                  +   +A      
Sbjct: 235 GAKTLNDLAGTMISL--------------------SSGGEIRLDDLGTVTDTIADRRTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +           S              L+A    + L +++  +V    G+   
Sbjct: 275 RVNGEPVVALGIKRSKGASDVVVASAVQKRIDALKAAHPDVDLKLIDT-SVDYTKGNYEA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  ++A  S+ L++      + +LG +L L S   I 
Sbjct: 334 AISTLFEGAILAVIVVFLFLRDIRATVIAAISLPLSIFPAFWAMDMLGFSLNLVSFLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A   I  + I        + 
Sbjct: 394 LSTGILVDDAIVEIENIVRHMRMGKSPYQAAIEAADEIGLAVIAISLTIIAIFAPASFMS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ + +  S+  A  +   +  + +++   +      + R +      
Sbjct: 454 GIAGQFFKQFGITVSVQVFFSLLAARFVTPVLAAYFLKHVPHEEKPPGRILRGYTRMVTW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV--VRS 596
           +++               SI SI LL    L      +  + + +     +  +     +
Sbjct: 514 SVKHYYLTVLIGLGVFAASIWSIVLLPQGFLPAQDTSRSVMAMELPPGTQIGTTEKITET 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +  L+        F         +      S+      +  +K     + L+  ++ + 
Sbjct: 574 VVTMLRKRPEVRSVFVDGGRVPPGIHEVRRASLIINYTSKGDRKITQRELELAISKDLDQ 633

Query: 657 VGPKISRELIRKGIVGVIISAIA 679
           V       L   G+  + +    
Sbjct: 634 VPDIRYWFLDENGLRAISLVVTG 656



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 78/250 (31%), Gaps = 8/250 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + +   + L  + +  +++       +        L   + +    V     ++   
Sbjct: 246 MISLSSGGEIRLDDLGTVTDTIADRRTFARVNGEPVVALGIKRSKGASDVVVASAVQKRI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAIT 698
             +    P   ++  +      ++      I  +   + +A+++           + A  
Sbjct: 306 DALKAAHPDVDLKLIDT-SVDYTKGNYEAAISTLFEGAILAVIVVFLFLRDIRATVIAAI 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L L I        + G   NL +  A+    G  V+D +V  + +   ++      S  
Sbjct: 365 SLPLSIFPAFWAMDMLGFSLNLVSFLAITLSTGILVDDAIVEIENI---VRHMRMGKSPY 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFI 815
               ++ +E     +  S+           + G  G     F I ++  +  +  ++ F+
Sbjct: 422 QAAIEAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARFV 481

Query: 816 AAPILLFIYD 825
              +  +   
Sbjct: 482 TPVLAAYFLK 491



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/234 (10%), Positives = 78/234 (33%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  ++           ++     +      + A     + +            ++ + 
Sbjct: 772  SVVADVKFDQGPTSINRYDRERQATVAADLVGNAALGDAQKRINDLPVMKSLPKGVRVSP 831

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   EL       +    + +   + + F  +   +  + +L L I   +G   + 
Sbjct: 832  SGDAESLNELSDGFATAISAGLMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIGALLIT 891

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G +        +L L+G    + +++ +   ++++         + +  +  +     V 
Sbjct: 892  GKQLTTPVWIGILMLMGIVTKNAIMLVEFALESIRDGKNR---EEAMIDAGQKRARPIVM 948

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T++A    ++P A+    GG      A+ +  G++ +   S+     + + + D
Sbjct: 949  TTIAMVAGMIPSALAFGAGGEFRSPMALAVIGGLIFSTVLSLIFVPAMFMMMDD 1002


>gi|255323202|ref|ZP_05364337.1| AcrB protein [Campylobacter showae RM3277]
 gi|255299725|gb|EET79007.1| AcrB protein [Campylobacter showae RM3277]
          Length = 1045

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/567 (12%), Positives = 157/567 (27%), Gaps = 36/567 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G +           ++ +P   P          +          +
Sbjct: 9   RPIFATVVSIIIVIAGAMAI-----KGLPIEEYPKLTPP---------QISVSATYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFL-KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +     +   S       I + F      +     V   +Q 
Sbjct: 55  AQTIADSVASAIEDQINGVENMLYMQSTSSSSGSLNINVYFKIGTSAKQATIDVNNRVQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   +         + +            +E    +     D+I       
Sbjct: 115 ALSRLPQEVQNMGVTVRERSGSILEVVGFTSSN--MDLVELYNYVNLNIADEIKRVNGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P +L     T + +     + N+       G +     +   Y
Sbjct: 173 DTALIGSKEYSMRIWLKPDKLAYYKLTPSDVIAQVKIQNSQYAAGKIGEQPSDGDNPYVY 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +      G              DI                 +    A      
Sbjct: 233 SVRSDGRLKNAAQFG--------------DIIIKSADGAVLKLKDVATVELGAASYASDA 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L        +   +   +   T +        L         + V          S   
Sbjct: 279 MLNGQDAIPLLIFMQNDANALATAQAVNAKLDELSKNFPAGFKHTVAYNPTEFIEVSIHE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  ++   ++ +++I T   L  +G ++ L ++  ++
Sbjct: 339 VVKTFIEAMILVIIVMYMFLKSFRATIIPMLAVPVSIIGTFGGLYAMGFSINLITLFALI 398

Query: 422 LGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +       K+ +V  +         + +    +      V + F
Sbjct: 399 LAIGIVVDDAIIVIENVERILHEEKDITVKEATYKAMEEVQTPVISIVLVLSAVFVPVSF 458

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R FA+T+  S+ IS F A+++  A+   +++ ++ K          F    
Sbjct: 459 MEGFVGVIQRQFALTLVTSVCISGFVALTLTPALCGVMLKKQESKPFWFVQKFNDFFDWS 518

Query: 537 CIAIQFMRARFWGVGISILFSICSICL 563
                   A      I  L  I  +  
Sbjct: 519 TKIFTAGVATVLRHVIISLIVIGIMGF 545



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/246 (10%), Positives = 84/246 (34%), Gaps = 13/246 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V +                 +   L+       +++A  + +     ++++  P     
Sbjct: 263 DVATVELGAASYASDAMLNGQDAIPLLIFMQNDANALATAQAVNAKLDELSKNFPAGFKH 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFF 711
                  +     I + +   I + I ++I +      +   +  +  + + I  T G  
Sbjct: 323 TVAYNPTEFIEVSIHEVVKTFIEAMILVIIVMYMFLKSFRATIIPMLAVPVSIIGTFGGL 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   NL  + A++  IG  V+D ++V + + + +      I+ ++   K++ E    
Sbjct: 383 YAMGFSINLITLFALILAIGIVVDDAIIVIENV-ERILHEEKDITVKEATYKAMEEVQTP 441

Query: 772 SVYTSMAAFISVLPMAV-------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    +  + +  + V       + G +   FA+ +   + ++   ++ +   +   + 
Sbjct: 442 VI----SIVLVLSAVFVPVSFMEGFVGVIQRQFALTLVTSVCISGFVALTLTPALCGVML 497

Query: 825 DWRAKN 830
             +   
Sbjct: 498 KKQESK 503



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 7/201 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
              ++ +++ + + + +     +              G    I   I + + +  ++ +W 
Sbjct: 833  DAIKAIQEVVEQTLNMEEYSISWAGTAYQEVSSQGTGSTAFIFGMIFVFLILAAQYERWL 892

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  IT +   +  +L      G+  ++     +L LIG S  + +++ +     M+  
Sbjct: 893  IPLAVITAVPFAVFGSLVAVWARGLTNDIYFQIGLLLLIGLSAKNAILIVEFA---MQER 949

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                S  D    +        V TS+A  + V PM +    G +   S    +  G++ A
Sbjct: 950  LAGKSVFDAAVNAARLRFRPIVMTSLAFTLGVFPMVISTGAGAASRHSLGTGVIGGMIAA 1009

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
             + +IF        +     K
Sbjct: 1010 TTIAIFFIPMFYYLLEKLNNK 1030


>gi|89072746|ref|ZP_01159311.1| putative multidrug resistance protein [Photobacterium sp. SKA34]
 gi|89051566|gb|EAR57020.1| putative multidrug resistance protein [Photobacterium sp. SKA34]
          Length = 1041

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 56/529 (10%), Positives = 146/529 (27%), Gaps = 38/529 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVVAIVLSLLLCVFGVVS-----FSKLAIREMPDVESPVVT---------VMTTYDGT 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +          R   ++I++ F+           V   +  
Sbjct: 55  SATVMESQVTTPIEDELSGISGIDNITSVTRNGMSRISIEFSMDWDLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++          V    +  +      + +    R   D+  +     
Sbjct: 115 AQRRLPDDASDPIVSKDNGSGEPAVYINLSSSE--MDRTQLTDYAQRVLEDRFSLINGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     TT  +                          N  
Sbjct: 173 SVSLSGGLYKVMYLKLKPELMAGRGVTTKDIIDALRDE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   +V      +   TA      +                +     ++           
Sbjct: 214 LPGGEVRNDQTVMAVRTARLYRTANDFKYLTVRTTENGTPIYLKDVADVAIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V         +  +     +      A ++          V+         S S 
Sbjct: 274 KSNGVVNLSLGIVTMSDANPLEVAKDVRAEVARMQKFLPEGTSLTVDYDATVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLLVTGALVILVLYVFIGQARATLIPAVTVPVSLISAFITAYFFGFSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I    ++ +S   +   G       +  +    ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVVENIFHHMQRGESPLLAAYKGTREVGFAVIATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           G        F++ + ++++ S   A+++   M   I++     +     
Sbjct: 454 GMVGRLFTEFSVLLAMAVIFSSLIALTLTPVMGSKILKANVKPTRFNLW 502



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 79/244 (32%), Gaps = 10/244 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F       + L            V + V+ 
Sbjct: 243 LTVRTTENGTPIYLKDVADVAIGAENENSTFKSNGVVNLSLGIVTMSDANPLEVAKDVRA 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG--IVGVIISAIAMLIYIWIRF--KWYFALGA 696
           ++  +        +  V    +  + R    +   ++   A++I +   F  +    L  
Sbjct: 303 EVARMQKFLPEGTSLTVDYDATVFIERSISEVYSTLLVTGALVILVLYVFIGQARATLIP 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             T+ + +         FG   NL  + A++  IG  V+D +VV + +           S
Sbjct: 363 AVTVPVSLISAFITAYFFGFSINLLTLMALILAIGLVVDDAIVVVENI---FHHMQRGES 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
                 K   E     + T+    +  LP++   G V      F++ +A  ++ ++  ++
Sbjct: 420 PLLAAYKGTREVGFAVIATTAVLVMVFLPISFMEGMVGRLFTEFSVLLAMAVIFSSLIAL 479

Query: 814 FIAA 817
            +  
Sbjct: 480 TLTP 483



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + I   L    L G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMLTVPMGIFGGLAGLWLMGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    I F   I  +    L   + T+       +P+ +    G     S    + FG+
Sbjct: 931  QLRDKGIEFEQAIIDASVRRLRPILMTAFTTLFGAIPLIISTGAGAESRISVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A   ++F+   +   +        
Sbjct: 991  AFATLVTLFVIPAMYRLMAGKTKSPG 1016


>gi|324019626|gb|EGB88845.1| putative ATP synthase F0, A subunit [Escherichia coli MS 117-3]
          Length = 1040

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/652 (10%), Positives = 169/652 (25%), Gaps = 42/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FAIT+ ++ILIS   ++++   M   +       K+ +    +      +I 
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIV 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                         + +S+  S   + +L    +  G        +     +    S   
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           +  +  +            ++    +     +    +  L++  K + E   
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|315224599|ref|ZP_07866425.1| HAE1 efflux family protein [Capnocytophaga ochracea F0287]
 gi|314945465|gb|EFS97488.1| HAE1 efflux family protein [Capnocytophaga ochracea F0287]
          Length = 1052

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 66/650 (10%), Positives = 173/650 (26%), Gaps = 53/650 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G+L  +        + ++P   P               + +  + 
Sbjct: 8   RPVLSTVVSILIVILGVLGII-----SLPISQYPDIAP-------------VTVQVSANY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + +     L   +        I   +       IT+ F      +  A  V  
Sbjct: 50  AGANAETVLKAVVIPLEEQINGVENMDYITSSASNSGSANITVYFKQGTNGDIAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   NS L  +  ++ +    +   +++      +      +     +    I  I   
Sbjct: 110 AVSRANSILPSEVTQSGVTVRKQSSGNLMFLTFFSENKELDDVFLQNYLSINVIPAIKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P +L+       +++      +        G       +
Sbjct: 170 SGVGEASAFGGKTYSMRIWLNPQKLQAYGLNPTEVTAAISAQSREAAAGTLGQNSGSSYE 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                     ++S                +    +     G R         +       
Sbjct: 230 YVIKYKGKYTQVS----------------EYENIVLKALDGGRILRLKDVAKVELDALGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           S     + +  I+    L   L+          +          
Sbjct: 274 TGFSESKGRPAVAMGISQTPGSNAHEIIQNIEKLLDELKPSLPEGITYTINYNANTFLDA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S    T      LV +V+++ +   +  L+   ++ ++++ T   L+L G ++ + ++
Sbjct: 334 AISKVVSTLLEAFLLVFLVVYIFLQDFRSTLIPAIAVPVSIVGTFFFLNLFGYSVNMLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +  + ++    +     +     I    +      V 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHAKMEQTHEKAKPATISAMNEITGAIISITLVMAAVFVP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           + F GG      + F +T+ ++I+IS   A+++   +               +    K  
Sbjct: 454 VTFMGGTTGVFYKQFGVTLIVAIVISAINALTLSPVLCSLFLKPHGDKEYEKKSWFGKFF 513

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
               ++                R   V + +L             +  G          +
Sbjct: 514 HKFNVAFNATTHKYGQTFTFFLRHKWVTLVLLLMAGGGIYFANKSMKSGFVPSEDQGFVM 573

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +    +  + +      ++  + S  N  G +N                 
Sbjct: 574 MDVSMIPGASMERVANIMREVNESLSNIPGVENVTFVTGRGMISGEGSNN 623



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 87/238 (36%), Gaps = 7/238 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              ++       +   Q    ++    + +E +  ++   +P     
Sbjct: 262 DVAKVELDALGYTGFSESKGRPAVAMGISQTPGSNAHEIIQNIEKLLDELKPSLPEGITY 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                        I K +  ++ + + + + ++I    +   L     + + I  T  F 
Sbjct: 322 TINYNANTFLDAAISKVVSTLLEAFLLVFLVVYIFLQDFRSTLIPAIAVPVSIVGTFFFL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   N+  + A++  IG  V+D +VV + +   M+          +   ++NE  G 
Sbjct: 382 NLFGYSVNMLTLFALVLAIGIVVDDAIVVVEAVHAKMEQTHEKAKPATI--SAMNEITGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +  ++      +P+   GG+       F + +   IV++A +++   +P+L  ++  
Sbjct: 440 IISITLVMAAVFVPVTFMGGTTGVFYKQFGVTLIVAIVISAINAL-TLSPVLCSLFLK 496



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 44/422 (10%), Positives = 117/422 (27%), Gaps = 20/422 (4%)

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
            LS +     +  + G  +  G   ++ +   +    E R        +    + A+  + 
Sbjct: 598  LSNIPGVENVTFVTGRGMISGEGSNNGMGFFKLKPFEERSKLPGQD-IQSIINNAFRAVA 656

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            +     +I        G G   G +  +       +       +  +  +++  +++   
Sbjct: 657  NIKDANVIFFQPPSVPGFGVGGGVSFVLLDKSGSDISEVNKNAQEFLGALMQRPEIQFAQ 716

Query: 525  INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             +    +      I ++        V   +      I   +             +   + 
Sbjct: 717  TSFNVNYPQYQMDINVERAMQSGITVSTILSTLQNYIGGFYATDFTLYGKQYRVMVQSLP 776

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNF------DGEKNFLVRLQYQPGDSVAQTRVLEMV 638
              R    S+    +++          F       G ++      +      AQ       
Sbjct: 777  EARKDLNSLNSLFVKTGSGTMAPITEFVTLTRTFGPQSLSRYNLFTSVSISAQNNPAYST 836

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIR----KGIVGVIISAIAMLIYIWI---RFKWY 691
               +  +  ++        G   +              +I     +  Y  +      + 
Sbjct: 837  GDALKAVQEVAAQTLNNNYGIDYTGLTREEQNAGSQTILIFLLSLVFTYFILSAQYESYL 896

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + +L   I        LFG+E N+    +++ L+G    + +++ +     ++  
Sbjct: 897  LPLSVLFSLPFGIFGAYLGQWLFGLENNIYFQISLIMLMGLLAKNAILIVEFA---VQRR 953

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
                S       +    L   + TS A  + ++P+      G +   S A   A G ++ 
Sbjct: 954  RMGESLSKAAINAAMARLRPILMTSFAFIVGLMPLVFASGVGAAGNRSVATGAAIGQLIG 1013

Query: 809  AS 810
              
Sbjct: 1014 TF 1015


>gi|60682814|ref|YP_212958.1| putative multidrug resistance/siderophore transport related,
           membrane protein [Bacteroides fragilis NCTC 9343]
 gi|60494248|emb|CAH09041.1| putative multidrug resistance/siderophore transport related,
           membrane protein [Bacteroides fragilis NCTC 9343]
          Length = 1068

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 74/694 (10%), Positives = 180/694 (25%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFTLPVEQYPDIAPPTIM---------VSTSYFGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S        IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSSATNAGTVSITVYFKQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           +  I      +I       
Sbjct: 115 ATGQLPSEVNQVGVTTSKRQTSILQMFSLHSPDDSYDEAFLANYISINLKPEILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        L     P  + Q     + +S      N       FG            
Sbjct: 175 DMMIMG-GDYSLRIWMKPDVMAQYRLIPSDVSTVLAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++                   +    +       +         I           
Sbjct: 234 YKGRRI----------------TPEEFGEIVIRSTDDGQVLKLKDIATIELGQESYAYSG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +               R              +      S   
Sbjct: 278 TTDGHNGVSCMLFQTAGSNATEVNNQINRFLEEARKELPQGVELTQLMSSNDFLYASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLLEAILLVILVVYVFLQDIRSTLIPLVGIIVSLIGTFAFMAIAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASVDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 SGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALLLKPYINEDGTQKQNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        I + F++ R+    + I      + L+ T   +   D   G+    +
Sbjct: 518 NAAFDVVVEKYKGIVLFFIKRRWLTGSLLIASIALLVVLMNTTKTSLVPDEDQGVIFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +           ++       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLRTTDDVMKRIEERMEQIPQVKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    +  +    I
Sbjct: 638 PGKEDDVQAVIGQVYGRTADIKDASVFAISPGMI 671



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 87/201 (43%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +    R LE  +K++ + V L+ + ++         E+++  +  +++  + + +++   
Sbjct: 301 NNQINRFLEEARKELPQGVELTQLMSSNDFLYASIHEVVKTLLEAILLVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  +I+ +  T  F A+ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 359 -DIRSTLIPLVGIIVSLIGTFAFMAIAGFSINLITLFALVLVIGTVVDDAIVVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++   G+       F + MA  
Sbjct: 418 FDVGYKSSYMASV--DAMKGISNAVITSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +   +  
Sbjct: 476 VGISAVNALTLSPALCALLLK 496



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 65/201 (32%), Gaps = 11/201 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            + ++                  G     E  + G   +I     ++IY+    +   +  
Sbjct: 838  DAIRAVQETASTSLPKGYGYDYGGITREENQQSGTTAIIFGICFLMIYLILSALYESFLI 897

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + ++   +  +  F  +FG+E N+     ++ LIG      +++     +      
Sbjct: 898  PFAVLLSVPCGLMGSFLFARMFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERR 953

Query: 753  T-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +        +    L   + T++     +LP+ V    G +   S       G+V+ 
Sbjct: 954  KAGMGLIASALSAAKARLRPILMTALTMIFGLLPLMVASGVGANGNRSLGTGAVGGMVIG 1013

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
              + +FI   + +     + +
Sbjct: 1014 TLALLFIVPSLFIAFQWLQER 1034


>gi|27376627|ref|NP_768156.1| RND multidrug efflux transporter [Bradyrhizobium japonicum USDA
           110]
 gi|27349768|dbj|BAC46781.1| RND multidrug efflux transporter [Bradyrhizobium japonicum USDA
           110]
          Length = 1050

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 87/688 (12%), Positives = 181/688 (26%), Gaps = 49/688 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC IG +       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVALFICLIGAISV-----PLLPIAQYPIIAPP-------------SISISTSY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L       +   L            S    Q +I  +F         + +V  
Sbjct: 50  PGASPENLYNSVTRLIEEELNGASGILNFESTSDSLGQVEIIANFQPGTDTSAASVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V ++L     +  ++        + +   N        +     +IR  + +I   
Sbjct: 110 RIKRVEARLPRAVIQQGILIEEASSAVLQIITLNSTDGSLDEVGLGDFMIRNVLGEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP++L     T   ++      N        G      + 
Sbjct: 170 PGVGRATLY-STERSLRVWVDPAKLVGYGLTAEDVNKAISAQNAQVASGSIGAEPSTSTQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  K ++S                +    I                 I       
Sbjct: 229 RTSALVLVKGQLS-------------SPDEFGAIILRANADGSTVRLRDVARIEVGGLSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 QFNTRLNGKPTAGLSVLMSPTGNALATASAVEEKMKELSRFFPANISYEIPYNITPVVEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ ++    + + ++     L L G ++ + S+
Sbjct: 336 SIKKVLSTLVEAVVLVFVVMFLFLQNIRYTIIPTIVVPVALLGACTTLLLAGYSINMLSM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL +G+ VD  I+V E +      +      +     S+    I    +  +   V 
Sbjct: 396 FGMVLAVGILVDDAIVVVENVERIMSEEGLPPKEATRKAMSQISGAIIGITLVLMAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDI 525
           + FF G      R F++TM  +I  S F A+S+  A+   +           KK      
Sbjct: 456 MAFFPGSVGIIYRQFSVTMVAAIGFSAFLALSLTPALCATLLKPVAAGHGHAKKGVFGWF 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           N +           + F   R   + +  +  +  +   F +     +       +    
Sbjct: 516 NRMLEGGKEGYSRTVGFSLKRTGRLMLVYVALLVGLSWAFVNLPGGFLPVDDQGFVTTDV 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             P D S  R+     ++     Q    +    +      G  +   +    +K      
Sbjct: 576 QTPSDSSYARTEAVIEKVEKYLAQRPGVDNVTFLTGFSFSGQGMNTAQAFITLKDWSERG 635

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV 673
              S       +   +S  +    I  +
Sbjct: 636 PKESAAAIVADINRDLSSSIRDAKISAL 663



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/139 (14%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + +     + + +        L G   N+ ++  ++  +G  V+D +VV + +     
Sbjct: 362 IRYTIIPTIVVPVALLGACTTLLLAGYSINMLSMFGMVLAVGILVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  ++   K++++  G  +  ++      +PMA + GSV      F++ M   I 
Sbjct: 420 MSEEGLPPKEATRKAMSQISGAIIGITLVLMAVFVPMAFFPGSVGIIYRQFSVTMVAAIG 479

Query: 807 VAASSSIFIAAPILLFIYD 825
            +A  ++ +   +   +  
Sbjct: 480 FSAFLALSLTPALCATLLK 498



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 73/191 (38%), Gaps = 13/191 (6%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G  +  +L   +    + +S   + + +   ++ W   
Sbjct: 835  DAIAEMERLAGKLPRGFGYEWTGQSLQEKLSGSQAPFLLALSVFVVFLCLAALYESWTIP 894

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  + T+ L I   +    L G+  ++     ++T+IG +  D +++ +  +   K    
Sbjct: 895  LAVLLTVPLGIVGAVIAAMLRGLPNDVYFTVGLITIIGLAAKDAILIIEFAKDLRKE--- 951

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                 D   ++        + T +A    VLPMA+    GG+   +    +  G++    
Sbjct: 952  GKPLVDATIEACRLRFRPILMTGLAFICGVLPMAIAHGAGGASQQALGSIVMGGMI---- 1007

Query: 811  SSIFIAAPILL 821
             ++ I A +++
Sbjct: 1008 -AVVILALLMV 1017


>gi|319945192|ref|ZP_08019454.1| hydrophobe/amphiphile efflux-1 family RND transporter [Lautropia
           mirabilis ATCC 51599]
 gi|319741762|gb|EFV94187.1| hydrophobe/amphiphile efflux-1 family RND transporter [Lautropia
           mirabilis ATCC 51599]
          Length = 1018

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 77/603 (12%), Positives = 171/603 (28%), Gaps = 41/603 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +++L+  +   GL+      +       +P                     L+  
Sbjct: 9   RNPIAVILLFLALTIAGLVSFGKMRIQNMPDMDYPVVT--------------VSASLDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     L+       ++      + + F   +  +   D+V   +QG
Sbjct: 55  TPDQLENDVARKIENALVDLQGIRHMSSTLGDGTVSLMVQFEVDKPIQEALDQVRSKVQG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L     + ++         ++     I        E S  +       +   +   
Sbjct: 115 VRADLPSALPEPVVDKVELASQPVL--AYAIQSDRMDIQELSWFVDNDLNRMLLGLKGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  Q+  + DP+RLR L  T   +S           G    +   +       
Sbjct: 173 KVTRVGGVTRQVHVDLDPTRLRALGLTVGAISEQLRNNQIESAGGHADIAGGKQPTRVLA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   ++  + +                         RR        +   +       
Sbjct: 233 RVKSAEQLKKVQIT--------------------SGDGRRLMLGDLGTVSDTIEEPTTSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    I     S     S          +A  L+     +KL             S + 
Sbjct: 273 WLDGKEIVGFEISRSRGESEVDVGRRVREMAQKLQQDRPYLKLTE-TMDLATPAQESFNN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++V++  +   +   +A  ++ ++V+     + LL  TL   S+  + 
Sbjct: 332 TMHTLYEGALLAVVVVWFFLRNWRATFLAAVALPMSVLPAFMGMHLLDFTLNGVSLLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I       ++ + +           +  +  T +   +   F  
Sbjct: 392 LVIGVLVDDAIVEIENIERHLEMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMT 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F  T  +++  S+  A  +   M  +++  ++ +    +P      +    
Sbjct: 452 GLVGRFFKQFGWTAAIAVFASLVVARMLTPMMAAYMLAPRQGREEGQDPRWLRTYLRLVR 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +   R R   V   + F    +            D     Q+ +       L       
Sbjct: 512 WVLAHR-RQTAVYAVLFFVGSLVLASHLPSAFMPPDDYEQTQVTLTLGPGATLQQTEQAA 570

Query: 599 ESL 601
           E+ 
Sbjct: 571 ETA 573



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 68/216 (31%), Gaps = 11/216 (5%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
           DG++     +    G+S            +  +           +     ++E     + 
Sbjct: 275 DGKEIVGFEISRSRGESEVDVGRRVREMAQKLQQDRPYLKLTETMDLATPAQESFNNTMH 334

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +   A+  ++ +W   + W     A   L + +        L     N  ++ A+  +I
Sbjct: 335 TLYEGALLAVVVVWFFLRNWRATFLAAVALPMSVLPAFMGMHLLDFTLNGVSLLALTLVI 394

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V  + +    +      +      ++ +E     + T+       LP A   
Sbjct: 395 GVLVDDAIVEIENI---ERHLEMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMT 451

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           G V      F    A  +     +S+ +A  +   +
Sbjct: 452 GLVGRFFKQFGWTAAIAV----FASLVVARMLTPMM 483



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/225 (9%), Positives = 85/225 (37%), Gaps = 10/225 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++N    ++    D  +  + +  +         +   Q+ +         +     + +
Sbjct: 793  DRNITFTIELGDQDLGSIEQQVMNLPSIKQLPEGVKIEQSGDAELMTD---MFSDFAMAM 849

Query: 674  IISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +   + + ++ + +   +   +  ++ L L +  +     L   + ++ A+  ++ L+G 
Sbjct: 850  LAGVLCIWMVLVLLFKSFLHPVTILSALPLALGGSFIALLLGRYDMSMPALIGLIMLMGI 909

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
               + +++ +     M      +     +  + ++     + T++A    +LP+ +   S
Sbjct: 910  VTKNSILLVE--YAIMARREHGMDRWHALMDACHKRARPIIMTTVAMGAGMLPVIIGSPS 967

Query: 793  VIGSF----AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               +F     + +  G++ + + S+ +   +  +I D+    AR+
Sbjct: 968  TDTTFTAPMGMAVLGGLITSTALSLLVVPAVFTYIDDFGQWVARL 1012


>gi|294626515|ref|ZP_06705114.1| acriflavin resistance protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294664148|ref|ZP_06729536.1| acriflavin resistance protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292599205|gb|EFF43343.1| acriflavin resistance protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292606081|gb|EFF49344.1| acriflavin resistance protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 1082

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 60/564 (10%), Positives = 160/564 (28%), Gaps = 40/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +  +G+L        Q  +   P     + +                 
Sbjct: 9   RRPIATSLLMAGVLLLGIL-----GYRQLPVSALPEIDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R  +  +  V   ++ 
Sbjct: 55  NATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMERDIDIASQDVQAAIRQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 115 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDSLPLREVNRYADAILAQRLSQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  +                      +        R        N+   +       
Sbjct: 232 QLTDAAQ--------------------YRETIISYKDGRPVRLADVANVVDGVENDQLAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   LR+         V          S   
Sbjct: 272 WADGKQAVLLEIRRQPGANIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T  +++  G +L   S+  +V
Sbjct: 332 VKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ISM  ++++   M  ++++   +   +             +
Sbjct: 452 GVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERASAAGKTNL 511

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
             + + A    +   +     ++ 
Sbjct: 512 WTRTVGAYERSLDWVLAHQPLTLA 535



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 92/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++ +      +      +   +        +    V L+ +     
Sbjct: 230 NDQLTDAAQYRETIISYKDGRPVRLADVANVVDGVENDQLAAWADGKQAVLLEIRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I+ +  +I++
Sbjct: 290 NIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHEVKFTLVLTIALVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   +     + L +  T G  A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S  +  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 466 SIAVVISMLVSLTLTP 481



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 89/234 (38%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L   ++ +        ++   V + +      + ++ +  ++K   E+   + +    
Sbjct: 823  AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKAREELKIPTQVHAQF 882

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +             +  ++ S + + I + + ++ +   L  I+TL       L    + 
Sbjct: 883  VGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMC 942

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D     +       +  D I ++        + 
Sbjct: 943  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGTTAHDAIRRACLLRFRPIMM 999

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA +  LP+A+    G  +     I +  G++++   +++    I L++  
Sbjct: 1000 TTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1053


>gi|283785891|ref|YP_003365756.1| multidrug resistance protein [Citrobacter rodentium ICC168]
 gi|282949345|emb|CBG88956.1| multidrug resistance protein [Citrobacter rodentium ICC168]
          Length = 1040

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/586 (9%), Positives = 151/586 (25%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASLVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPGDLPNPPVYSKVNPADPPIMT-LAVTSSAMPMTQVQDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVRLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN    +      +                 + +       G  
Sbjct: 224 SAKGSLDGPQRAVTLSANDQMMSADEYRQLIIAYQNGAPVRLGDVATVVQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L+          V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIIATADSIHKMLPQLKESLPKSVNVTVLSDRTTNIRASVTDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FAIT+ ++ILIS   ++++   M   +       K+ +    +      +I 
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASERLFERVIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                         + +S+      + ++    +  G        +
Sbjct: 524 GYGRWLAKVLNHPWLTLSVALGTLLLSVMLWIFIPKGFFPVQDNGI 569



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|213157834|ref|YP_002320632.1| multidrug efflux protein [Acinetobacter baumannii AB0057]
 gi|301511534|ref|ZP_07236771.1| multidrug efflux protein [Acinetobacter baumannii AB058]
 gi|301594856|ref|ZP_07239864.1| multidrug efflux protein [Acinetobacter baumannii AB059]
 gi|332852293|ref|ZP_08434098.1| heavy metal efflux pump, CzcA family [Acinetobacter baumannii
           6013150]
 gi|213056994|gb|ACJ41896.1| multidrug efflux protein [Acinetobacter baumannii AB0057]
 gi|332729423|gb|EGJ60763.1| heavy metal efflux pump, CzcA family [Acinetobacter baumannii
           6013150]
          Length = 1032

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/629 (10%), Positives = 166/629 (26%), Gaps = 48/629 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP+      +                 
Sbjct: 9   KYPVFTIMMMLSLMVLGLAS-----WKRMTVEEFPNIDFPFVV---------VTTQYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +  + +   F         A  V   +  
Sbjct: 55  SPEAVESDITKKLEDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   +    ++         I+      +       + S  + ++ + Q+       
Sbjct: 115 VIAQFRDEIDTPIVQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  +  P +L+       ++       N          +        Q 
Sbjct: 173 NVNLLGDAKRQIRIKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                           D+          F      +    A +    
Sbjct: 233 KV--------------------IHPLGFGDLVIANKNGSPIFLKQVATVEDTQAELQSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    ++        L+A         V   +      S   
Sbjct: 273 FYNGRTAVSVDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VVRTIIEGAVLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+  ++LISMF + ++   +        K K   +     +       
Sbjct: 453 GLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKKESRLQRFFNYISNLLDG 512

Query: 539 AIQFM--------RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                        R RF  V I  +   +                 KG I++        
Sbjct: 513 LTHIYEKLLKLALRFRFITVIIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDS 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            L   ++ L  +      F +       +
Sbjct: 573 SLEYTQAKLHQVDQIIRQFPDVVSTYGVV 601



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 8/218 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +             +  + ++K   ++      +        I   +       +  +
Sbjct: 282 VDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGA 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG  ++D
Sbjct: 342 VLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDD 401

Query: 737 KVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+  +T               E     + T++      LP+A  GG +  
Sbjct: 402 AIVV----RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGR 457

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F + ++  ++++   S  +   +     D   K 
Sbjct: 458 FFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKK 495



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 861  ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 920

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 921  MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 977

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 978  LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 1020


>gi|298385970|ref|ZP_06995527.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           1_1_14]
 gi|298261198|gb|EFI04065.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           1_1_14]
          Length = 1058

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/697 (10%), Positives = 174/697 (24%), Gaps = 55/697 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P               + +   
Sbjct: 8   KRPVMAISISVLILAIGLISLF-----TLPVEQYPDIAPPT-------------VYVSAS 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +      L   +        I   +       I + F      +  A  V 
Sbjct: 50  YTGADAEAVMNSVIMPLEESINGVEDMMYITSSASNAGLAIIQVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 110 NRVAKAQGLLPAEVTKVGVSTMKRQTSFLQIGALVCTDGRYDQTFLANYLDINVIPQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDITGVLGEQNIEAPTGSLGESSQNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +                ++      
Sbjct: 229 Q----------------FTMKYRGRLKSVEEFQNTVVRSREDGSILRLKDVADVELGTMT 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +          +    +     
Sbjct: 273 YSFRSEMDSQPAVLYMIFQTAGSNATAVNKEITAQMERMEKNLPEGTEFVTMMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 333 ASIHNVVETLIIAIILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIVSCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +   R  
Sbjct: 453 PVTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 533 L-----------IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                             + F+R R+          +  + L+ T           G+ +
Sbjct: 513 AAYNASFNAVLDKYKKGVMYFIRHRWMVWTSLAATIVLLVYLMSTTKTGLVPQEDQGVIM 572

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             ++  P       + +       +           +       G   +   ++  +K  
Sbjct: 573 VNVSISPGSTLEETTKVMDRLENILKDTPEIEHYARVAGYGLISGQGTSYGTIIVRLKDW 632

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                                + +    I     + I
Sbjct: 633 SERKGKEHGSDAVASRLNAQFQSIKEAQIFSFQPAMI 669



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 81/291 (27%), Gaps = 8/291 (2%)

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                    +         ++      Y +D +    + V     +        L+ +   
Sbjct: 750  YCGGAYISNYNQYGKVYRVMMQASPEYRLDEQALNNMFVRNGTEMAPVSQFVTLKQVLGP 809

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            + + +                  S    +V+E V  +   I                   
Sbjct: 810  ETANRFNLYSTITANVNPADGYSSGEVQKVIEEVAAESLPIGYGYEYGGMAREEASSGGA 869

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 I  + I  I  LI   +   +      I ++   +  +  F  + G+E N+    
Sbjct: 870  QTVF-IYAICIFLIY-LILACLYESFLVPFAVIFSVPFGLMGSFLFAKILGLENNIYLQT 927

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ LIG      +++ +     ++     +   +    +    L   + T +     +L
Sbjct: 928  GVIMLIGLLAKTAILITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGML 984

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+      G +   S    +  G+ V   + +F+     +     + K  +
Sbjct: 985  PLMFSSGAGANGNSSLGTGVVGGMAVGTVALLFVVPVFYIIFEYLQEKIRK 1035



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 359 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 419 DAGYK--SPYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496


>gi|325924266|ref|ZP_08185816.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
 gi|325545258|gb|EGD16562.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
          Length = 1082

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/564 (10%), Positives = 158/564 (28%), Gaps = 40/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I  +G+L        Q  +   P     + +                 
Sbjct: 9   RRPIATSLLMAGILLLGIL-----GYRQLPVSALPEIDAPSLV---------VSTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R  +  A  V   ++ 
Sbjct: 55  NATTMASLVTTPLERQLGQISGLQMMTSDSSAGLSTIILQFSMDRDIDIAAQDVQAAIRQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 115 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDSLPLREVNRYADAILAQRLSQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  +                      +        R        N+   +       
Sbjct: 232 QLTDAAQ--------------------YRETIISYSNGRPVRLADVANVVDGVENDQLAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   L+A         V          S   
Sbjct: 272 WADGKPAVLLEIRRQPGANIVQTVEQIRSILPQLQAVLPADVHLEVFADRTETIRASVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T  +++  G +L   S+  +V
Sbjct: 332 VKFTLVLTIFLVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + +++ ISM  ++++   M  ++++   +   +             +
Sbjct: 452 GVTGRLFHEFAWVLSIAVTISMLVSLTLTPMMCAYLLKPDALPEGEDAHERAAAAGKTNL 511

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
             + +      +   +     ++ 
Sbjct: 512 WTRTVGTYERSLDWVLAHQPLTLA 535



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/255 (9%), Positives = 83/255 (32%), Gaps = 10/255 (3%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++        +      +   +        +    V L+ +     
Sbjct: 230 NDQLTDAAQYRETIISYSNGRPVRLADVANVVDGVENDQLAAWADGKPAVLLEIRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----IVGVIISAIAMLIYIW 685
              + +E ++  + ++  +        V    +  +           V+   + + +   
Sbjct: 290 NIVQTVEQIRSILPQLQAVLPADVHLEVFADRTETIRASVHEVKFTLVLTIFLVVAVIFV 349

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
              + +  +     + L +  T G  A  G+  +  ++ A++   G+ V+D +V+ + + 
Sbjct: 350 FLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI- 408

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
             ++      S  +  +    +     +  +++     LP+ +  G        FA  ++
Sbjct: 409 --VRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLS 466

Query: 803 FGIVVAASSSIFIAA 817
             + ++   S+ +  
Sbjct: 467 IAVTISMLVSLTLTP 481



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 87/249 (34%), Gaps = 11/249 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V A   + L+ +     +     +S Q           L      S A   + +  + 
Sbjct: 812  IVVGAGSIIPLAALAEAKVTNTPLVVSHQQQLPAVTVSFNLAPGHSLSQAVEAIEQARED 871

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                    +              ++    +  ++ S + + I + + ++ +   L  I+T
Sbjct: 872  LKIPTQVHAAFVGKAAEFTGSQTDI----VWLLLASIVVIYIVLGVLYESYIHPLTIIST 927

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    + G+  ++  +  ++ LIG    + +++ D     +       +  +
Sbjct: 928  LPPAGVGALLALMMCGLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGANAHE 984

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+ AA +  LP+A+    G  +     I +  G++++   +++  
Sbjct: 985  AIRRACLLRFRPIMMTTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTT 1044

Query: 817  APILLFIYD 825
              I L++  
Sbjct: 1045 PVIYLYMER 1053


>gi|239908200|ref|YP_002954941.1| multidrug resistance protein MdtB [Desulfovibrio magneticus RS-1]
 gi|239798066|dbj|BAH77055.1| multidrug resistance protein MdtB [Desulfovibrio magneticus RS-1]
          Length = 1039

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 63/522 (12%), Positives = 137/522 (26%), Gaps = 38/522 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   +   GL         Q  +   P                          
Sbjct: 10  RPVATTLIMVAVVLAGL-----TAYFQLPVSALPQVDYPTIQ---------VRTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL FA S   +    +V   +   
Sbjct: 56  PDVMASAVTAPLERQFGQMPGLTEMTSVSSPGASVITLQFALSLSLDVAEQEVQAAINTA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     + +      + ++S   +                +   +I        
Sbjct: 116 TSLLPDDLPTPPVYSKVNPADAPIMS-LALTSEAMELTAVQDLADTRLAQKISQLSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  E +P+ L         +       N +K    F              
Sbjct: 175 VSVAGGQRPAVRVEVNPTALAAYGIAVEDVRTAIAAANVNKAKGGFDGPRQSSILETNDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                            +       R        +I      V     
Sbjct: 235 LLTA--------------------DEYRPLIISYRDGRPVRLSDVASIRTGPEDVRQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    +   LRA         V          S    
Sbjct: 275 VNGKPAIVLNIQRQPGANVIAVVDRVKAILPQLRAALPAAVDLSVLTDRTVTIRASIDDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV+ V+++ +      L+   ++ L++I T  ++ LLG  L   ++  + +
Sbjct: 335 QIELLLAVVLVVGVIYLFLHDVPATLIPGTAVPLSLIGTFGVMYLLGYGLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E +     +      +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENVARHVEEGTPPLQAALNGAGQIGFTILSLTVSLVAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             G   R FA+T+G++IL S   ++++   +   ++     K
Sbjct: 455 VVGRLFREFAVTLGVAILFSAVVSLTLTPMLCARLLGRAGHK 496



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%), Gaps = 6/145 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L   T + L +  T G   L G   N   + A+    G+ V+D +V+ + +
Sbjct: 351 LFLHDVPATLIPGTAVPLSLIGTFGVMYLLGYGLNNLTLMALTIATGFVVDDAIVMIENV 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +                 +     +  +++    ++P+   G   G +   FA+ +
Sbjct: 411 ---ARHVEEGTPPLQAALNGAGQIGFTILSLTVSLVAVLIPLLFMGDVVGRLFREFAVTL 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDW 826
              I+ +A  S+ +   +   +   
Sbjct: 468 GVAILFSAVVSLTLTPMLCARLLGR 492


>gi|119472682|ref|ZP_01614652.1| preprotein translocase subunit SecD [Alteromonadales bacterium
           TW-7]
 gi|119444807|gb|EAW26109.1| preprotein translocase subunit SecD [Alteromonadales bacterium
           TW-7]
          Length = 612

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 150/504 (29%), Positives = 248/504 (49%), Gaps = 35/504 (6%)

Query: 36  PSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR 92
           P  + +   + I LGLDL GG   VL+VD D  V+  L     + +S + K+      + 
Sbjct: 119 PIWLQEFGLSPIKLGLDLNGGVLFVLDVDLDKAVDEQLASAYQQAKSIIIKQKAHGLKVL 178

Query: 93  QIQNKITLSFADSRFKENIADK--VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
           Q  +     F  +     +     V   +Q   + L V    N  V           S+ 
Sbjct: 179 QTGHG----FEINALPNAVQKLNPVIDEIQSRFANLAVTTTNNGNVKNA----KFSYSEQ 230

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
                    + Q++  +R RI+++GI+E+  QR G+ RI I+LPG QDP+  ++++G TA
Sbjct: 231 GRSNFNKEVMSQTLTTLRSRIEELGITEAVSQRQGTQRIRIELPGVQDPTEAKRIIGATA 290

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            + F+++           G +      G    ++     +G H+N           KP+V
Sbjct: 291 SLGFYQLKE--------IGGQTFNMQSGGTINLDPVPIFTGEHINN-ANIGRDDWGKPLV 341

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP------------VINQAIPSGKAQ 318
            +S D  G       ++ NIGKP+A V       A                    S +  
Sbjct: 342 QLSLDGQGGDAMSAFSKANIGKPMATVYSEYSQNAKGETVKKSEVINVANIAQHLSSRFS 401

Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378
           IS   + + A  LA +LRAGSL   + IV E+ +G  LG ++I  G  A++ G+ + + F
Sbjct: 402 ISNMKSQQAAADLALLLRAGSLTAPVTIVHEQTIGPSLGQENITNGLAALMLGMGITLAF 461

Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLAVDSNILVNER 437
           M + Y + GL+A+ ++ LN+   + L+SLL    LTLP IAG+VL IG+AVD+N+++ ER
Sbjct: 462 MALWYRRLGLIANVALLLNLTSLVGLMSLLPGVVLTLPGIAGLVLTIGMAVDTNVIIFER 521

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           I+EE RK +S + ++  G+ +A +TIFD+NIT +I  ++L+  G G V+GFAIT+ L ++
Sbjct: 522 IKEERRKGRSAYQAIQEGYKQAANTIFDANITTMITALILYGIGYGPVKGFAITLALGLI 581

Query: 498 ISMFTAISIVRAMMIFIIRYKKMK 521
            S+FT + + + +   +      K
Sbjct: 582 TSVFTGVYLSKVLSQTVYLKMAKK 605



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 98/241 (40%), Gaps = 5/241 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S    N +   +      N       L            Q      +  +   +    TI
Sbjct: 370 SEYSQNAKGETVKKSEVINVANIAQHLSSRFSISNMKSQQAAADLALLLRAGSLTAPVTI 429

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            + + +GP + +E I  G+  +++     L ++ + ++    L A   L+L++T  +G  
Sbjct: 430 VHEQTIGPSLGQENITNGLAALMLGMGITLAFMALWYR-RLGLIANVALLLNLTSLVGLM 488

Query: 712 ALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           +L  G+   L  +A ++  IG +V+  V++++R+++  +      S    I +   +   
Sbjct: 489 SLLPGVVLTLPGIAGLVLTIGMAVDTNVIIFERIKEERR---KGRSAYQAIQEGYKQAAN 545

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                ++   I+ L +   G   +  FAI +A G++ +  + ++++  +   +Y   AK 
Sbjct: 546 TIFDANITTMITALILYGIGYGPVKGFAITLALGLITSVFTGVYLSKVLSQTVYLKMAKK 605

Query: 831 A 831
           A
Sbjct: 606 A 606


>gi|332870516|ref|ZP_08439280.1| heavy metal efflux pump, CzcA family [Acinetobacter baumannii
           6013113]
 gi|332732253|gb|EGJ63521.1| heavy metal efflux pump, CzcA family [Acinetobacter baumannii
           6013113]
          Length = 1032

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/629 (10%), Positives = 167/629 (26%), Gaps = 48/629 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP+      +                 
Sbjct: 9   KYPVFTIMMMLSLMVLGLAS-----WKRMTVEEFPNIDFPFVV---------VTTQYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +  + +   F         A  V   +  
Sbjct: 55  SPEAVESDITKKLEDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   +    ++         I+      +       + S  + ++ + Q+       
Sbjct: 115 VIAQFRDEIDTPIVQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  +  P +L+       ++       N          +        Q 
Sbjct: 173 NVNLLGDAKRQIRIKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                           D+          F    + +    A +    
Sbjct: 233 KV--------------------IHPLGFGDLVIANKNGSPIFLKQVETVEDTQAELQSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    ++        L+A         V   +      S   
Sbjct: 273 FYNGRTAVSVDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VVRTIIEGAVLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+  ++LISMF + ++   +        K K   +     +       
Sbjct: 453 GLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKKESRLQRFFNYISNLLDG 512

Query: 539 AIQFM--------RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                        R RF  V I  +   +                 KG I++        
Sbjct: 513 LTHIYEKLLKLALRFRFITVIIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDS 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            L   ++ L  +      F +       +
Sbjct: 573 SLEYTQAKLHQVDQIIRQFPDVVSTYGVV 601



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 8/218 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +             +  + ++K   ++      +        I   +       +  +
Sbjct: 282 VDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGA 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG  ++D
Sbjct: 342 VLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDD 401

Query: 737 KVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+  +T               E     + T++      LP+A  GG +  
Sbjct: 402 AIVV----RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGR 457

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F + ++  ++++   S  +   +     D   K 
Sbjct: 458 FFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKK 495



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 861  ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 920

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 921  MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 977

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 978  LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 1020


>gi|134283793|ref|ZP_01770490.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 305]
 gi|134244781|gb|EBA44878.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 305]
          Length = 1100

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 159/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL   +   +       FP+ +                  L    
Sbjct: 10  RPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTIL--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVAEMTSMSSVGNARIVLQFNLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMV-VSLTSKTASPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSLSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +G H      N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEAGPHRYQLYTNDQATKAAQYKDLVIAYRNHAAVSLSDVSSVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        I       +   TIE        L A                    S +  
Sbjct: 275 MNGERAVLVILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG +L   S+  +++
Sbjct: 335 EHTLIIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++        +           + + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLVVSLTLTPMMCARLLPEAHAPRDEGRVARWLERGFEWMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +       +  +  +  +   Y +  KG     
Sbjct: 515 RGYERTLSWALRHPFTILMTLVATIALNIALYIVVPKGFFPQQ 557



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +S + M++++++R  W   L     + + I  T G   L G   N  ++ A++   
Sbjct: 338 LIIAVSLVVMVVFLFLR-NWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +                 E     +  S++     LP+ + G
Sbjct: 397 GFVVDDAIVVLENI---ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G V      FA+ ++  I V+   S+ +  
Sbjct: 454 GIVGRLFREFALTLSLAIAVSLVVSLTLTP 483



 Score = 44.7 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 39/215 (18%), Positives = 93/215 (43%), Gaps = 7/215 (3%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + E+    TIQ +     +  +E ++   + ++ +
Sbjct: 869  VATTISFNLPPGVSLSKATQVIYQTMAEVGVPPTIQGSFQGTAQAFQESLKDQPILIVAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LAAVYIVLGILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D     +       S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFA---IDASRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAE 1045

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G++V+   +++    + L++   R
Sbjct: 1046 MRAPLGIAIAGGLIVSQMLTLYTTPVVYLYMDRLR 1080


>gi|325299063|ref|YP_004258980.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides salanitronis DSM 18170]
 gi|324318616|gb|ADY36507.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides salanitronis DSM 18170]
          Length = 1063

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/616 (11%), Positives = 165/616 (26%), Gaps = 56/616 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I  +G +  +        +++FP+  P               + +    
Sbjct: 9   RPVLSIVISVAIVLLGCISLV-----TLPVEQFPNIAPPT-------------VEVTTSY 50

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTL 117
                  +Q       +E  + ++       +     +  IT+ F      +  A  V  
Sbjct: 51  PGANAETVQKSVIVPLEEAINGVENMTYIYSTASNAGDVYITIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  D  +  +VT  +++  +                 +  +    I ++   
Sbjct: 111 RVSKAQGQLPSDVTRIGVVTNKQQKSMLKAVTLWSPDDSYDNQFLNNYLQINVIPELKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +                P  + Q     + ++      N       FG  +     
Sbjct: 171 TGVGEVTLLGSNYGM-RIWLRPDVMAQYGIVPSDVTAALNAQNIESATGSFGENYEGVFQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                    V                   +    +                 I       
Sbjct: 230 YTMKYKGRLV----------------TPEEFGDMVIKSLPTGEVLRLKDVARIQLGDEAY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +         +    A  +    I         +                      
Sbjct: 274 NYKSMTNGHNGTLFMVYQTAGSNATEVINQIDARIEEMAKNLPKGVQFDELYSTKNFLDA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV+I+ ++ +   K   +   SI ++++ T A +S+ G +L L ++
Sbjct: 334 SMHQVIKTLFEAFLLVVIITYVFLQDVKSMTIPAISIMVSLVGTFAFMSVAGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E ++ +      S + +         S I  + +  +   + 
Sbjct: 394 FALVLAIGIVVDDAIIVVEAVQAKFDVGYKSSYMATMDAMGGITSAIITTTLVFMAVFIP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------------IRYKKMK 521
           +   GG +      F +TM  ++ IS   A+++  A+   +              +    
Sbjct: 454 VSMMGGTSGTFYMQFGLTMAAAVGISAINALTLSPALCALMLKPYLNEDGTEKQNFAARF 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
               N +           + F   R W        ++ ++  +        +  +    +
Sbjct: 514 RTAFNAVFSVITQRYMGGVLFFIRRRWLAVGIFACAVAALAWMMNTTKTGLLPDEDMGSI 573

Query: 582 GVLANRPVDLSVVRSN 597
            V    P   S+ R++
Sbjct: 574 MVNVTTPPGSSLARTS 589



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 86/200 (43%), Gaps = 8/200 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 +E + K + + V    + +T+        ++I+      +   + ++ Y++++ 
Sbjct: 302 NQIDARIEEMAKNLPKGVQFDELYSTKNFLDASMHQVIKTLFEAFL--LVVIITYVFLQD 359

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                + AI ++++ +  T  F ++ G   NL  + A++  IG  V+D ++V + ++   
Sbjct: 360 VKSMTIPAI-SIMVSLVGTFAFMSVAGFSLNLLTLFALVLAIGIVVDDAIIVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +   S     +   ++       + T++      +P+++ GG+       F + MA  +
Sbjct: 419 DVGYKSSYMATM--DAMGGITSAIITTTLVFMAVFIPVSMMGGTSGTFYMQFGLTMAAAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A +++ ++  +   +  
Sbjct: 477 GISAINALTLSPALCALMLK 496



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 65/235 (27%), Gaps = 12/235 (5%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  N    LS      +      ++  N                   A   + E+  + +
Sbjct: 792  VNNNEMAPLSQFVKLTKVYGPESLARFNLYSAMGINGEAAQGYSSGDAINAIREVAAENL 851

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                       +       +       I+ +I +    LI   +   +      I  +  
Sbjct: 852  PRGYSFEFAGISREESQTTNN----TAIIFLICTVFLYLILCGLYESFLVPFAVILAVPF 907

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLI 761
             +  +  F  L G+E N+     ++ LIG      +++     +         +S     
Sbjct: 908  GLMGSFVFAKLMGLENNIYMQTGLIMLIGLLAKTAILLT----EYAADRRRAGMSLVQAA 963

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
              +        + T +A    +LP+      G +   S    +  G++    + +
Sbjct: 964  LAAARVRFRPILMTVLAMIFGLLPLMFASGAGANGNSSLGSGVVGGMLFGILAIL 1018


>gi|260856055|ref|YP_003229946.1| multidrug efflux system, subunit B [Escherichia coli O26:H11 str.
           11368]
 gi|257754704|dbj|BAI26206.1| multidrug efflux system, subunit B [Escherichia coli O26:H11 str.
           11368]
 gi|323152295|gb|EFZ38584.1| multidrug resistance protein mdtB [Escherichia coli EPECa14]
          Length = 1040

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVSTTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|27379013|ref|NP_770542.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
 gi|27352163|dbj|BAC49167.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
          Length = 1048

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/531 (13%), Positives = 152/531 (28%), Gaps = 38/531 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I  +GL+       P   +   P       I +  +L GGS       
Sbjct: 12  RYPIGTSLLMAGILFVGLVA-----YPLLPVAPLPQVDFPT-IQITANLPGGS------- 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       IT+ F  +R  +  A+ V   +  
Sbjct: 59  -PETMASSVAQPLERQFAQIPGIAQMTSTSYLGTASITIQFDLNRSIDGAANDVQGAINA 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + +L  +              + +L   +           S  +  Q   QI       
Sbjct: 118 ASGQLPKNLPSPPTYRKVNPADAPILL-LSATSETLPLTSVSDAVDAQLAQQISQLSGVA 176

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  + DP++L     +   +                             
Sbjct: 177 QVFIGGQQKPSIRIQVDPAKLVAKGLSMEDVRSQIA--------------------ITTV 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN      K   D+                             
Sbjct: 217 DSPKGNIDGDKRAYTIYANDQLTQSKDWNDVIIAYRNGGPLRIRDIGQAVSGAEDAKQAA 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   +   +   T++        L A   P     +          +   
Sbjct: 277 WANGKRGVFLVIFKQPGANVIETVDKIKATLPRLVAAIPPAIKIELISDRTTTIRAAVED 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ L ++   AL+ ++G +L   S+  + 
Sbjct: 337 VQFTLLLTIALVVMVIFIFLRSFWATVIPTITVPLALLGACALMWVVGYSLDNLSLMALT 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I     + +S   +   G      TI   +I+ +   + L   G
Sbjct: 397 IAVGFVVDDAIVMLENITRYIEEGESPMAAAFKGSKEIGFTIVSISISLVAVLIPLLLMG 456

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
              G   R FA+ + ++I +SMF ++++   M    +R     +       
Sbjct: 457 GIIGRLFREFAVVLAMTIFVSMFVSLTLTPMMASRFLRAHGEVTHGKFYQW 507



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 105/316 (33%), Gaps = 12/316 (3%)

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           +    I  ++  SI I       +                   S   +I      +T   
Sbjct: 175 VAQVFIGGQQKPSIRIQVDPAKLVAKGLSMEDVRSQIAITTVDSPKGNIDGDKRAYTIYA 234

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +         ++A R      +R   +++   + + Q         V L        
Sbjct: 235 NDQLTQSKDWNDVIIAYRNGGPLRIRDIGQAVSGAEDAKQAAWANGKRGVFLVIFKQPGA 294

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
                ++ +K  +  +V          +    +  +       +  + + I+ + M+I+I
Sbjct: 295 NVIETVDKIKATLPRLVAAIPPAIKIELISDRTTTIRAAVEDVQFTLLLTIALVVMVIFI 354

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  ++  +    T+ L +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 355 FLR-SFWATVIPTITVPLALLGACALMWVVGYSLDNLSLMALTIAVGFVVDDAIVMLENI 413

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +      S      K   E     V  S++    ++P+ + GG +      FA+ +
Sbjct: 414 ---TRYIEEGESPMAAAFKGSKEIGFTIVSISISLVAVLIPLLLMGGIIGRLFREFAVVL 470

Query: 802 AFGIVVAASSSIFIAA 817
           A  I V+   S+ +  
Sbjct: 471 AMTIFVSMFVSLTLTP 486



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 90/218 (41%), Gaps = 6/218 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   + + +     VA  +  E V+K + ++    T+ ++     +  ++ +    + +
Sbjct: 805  GQFPAITISFNLAQGVALGQATEAVQKAMADLGAPPTLNSSFQGTAQAFQQSLGTVPLLI 864

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + + + + I ++ +   +  ++TL       L      G +F+L A+  ++ LIG 
Sbjct: 865  LAALVVVYLILGILYESYIHPITILSTLPSAGVGALLILMASGFDFSLIALIGIILLIGI 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D             +  + I ++        + T+MAA +  +P+ +    
Sbjct: 925  VKKNGIMMVD--FAIAAERDEHKTPAESIRQAALLRFRPIMMTTMAALLGGVPLMLGHGT 982

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G  +       M  G++V+ + ++F    + L++ +  
Sbjct: 983  GAEIRQPLGYAMVGGLIVSQALTLFTTPVVYLYLDELN 1020


>gi|260557206|ref|ZP_05829422.1| nodulation protein [Acinetobacter baumannii ATCC 19606]
 gi|260409312|gb|EEX02614.1| nodulation protein [Acinetobacter baumannii ATCC 19606]
          Length = 1032

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 65/629 (10%), Positives = 166/629 (26%), Gaps = 48/629 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP+      +                 
Sbjct: 9   KYPVFTIMMMLSLMVLGLAS-----WKRMTVEEFPNIDFPFVV---------VTTQYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +  + +   F         A  V   +  
Sbjct: 55  SPEAVESDITKKLEDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   +    ++         I+      +       + S  + ++ + Q+       
Sbjct: 115 VIAQFRDEIDTPIVQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  +  P +L+       ++       N          +        Q 
Sbjct: 173 NVNLLGDAKRQIRIKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                           D+          F      +    A +    
Sbjct: 233 KV--------------------IHPLGFGDLVIANKNGSPIFLKQVATVEDTQAELQSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    ++        L+A         V   +      S   
Sbjct: 273 FYNGRTAVSVDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VVRTIIEGAVLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+  ++LISMF + ++   +        K K   +     +       
Sbjct: 453 GLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPIKKKESRLQRFFNYISNLLDG 512

Query: 539 AIQFM--------RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                        R RF  V I  +   +                 KG I++        
Sbjct: 513 LTHIYEKLLKLALRFRFITVIIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDS 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            L   ++ L  +      F +       +
Sbjct: 573 SLEYTQAKLHQVDQIIRQFPDVVSTYGVV 601



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 78/222 (35%), Gaps = 9/222 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +             +  + ++K   ++      +        I   +       +  +
Sbjct: 282 VDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGA 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG  ++D
Sbjct: 342 VLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDD 401

Query: 737 KVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+  +T               E     + T++      LP+A  GG +  
Sbjct: 402 AIVV----RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGR 457

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYD-WRAKNARI 833
               F + ++  ++++   S  +   +     D  + K +R+
Sbjct: 458 FFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPIKKKESRL 499



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 861  ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 920

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 921  MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 977

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 978  LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 1020


>gi|253569281|ref|ZP_04846691.1| multidrug resistance protein mexB [Bacteroides sp. 1_1_6]
 gi|251841300|gb|EES69381.1| multidrug resistance protein mexB [Bacteroides sp. 1_1_6]
          Length = 1058

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/697 (10%), Positives = 174/697 (24%), Gaps = 55/697 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P               + +   
Sbjct: 8   KRPVMAISISVLILAIGLISLF-----TLPVEQYPDIAPPT-------------VYVSAS 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +      L   +        I   +       I + F      +  A  V 
Sbjct: 50  YTGADAEAVMNSVIMPLEESINGVEDMMYITSSASNAGLAIIQVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 110 NRVAKAQGLLPAEVTKVGVSTMKRQTSFLQIGALVCTDGRYDQTFLANYLDINVIPQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDITGVLGEQNIEAPTGSLGESSQNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +                ++      
Sbjct: 229 Q----------------FTMKYRGRLKSVEEFQNTVVRSREDGSILRLKDVADVELGTMT 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +          +    +     
Sbjct: 273 YSFRSEMDSQPAVLYMIFQTAGSNATAVNKEITAQMERMEKNLPEGTEFVTMMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 333 ASIHNVVETLIIAIILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIIVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIVSCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +   R  
Sbjct: 453 PVTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 533 -----------LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                             + F+R R+          +  + L+ T           G+ +
Sbjct: 513 AAYNASFNAVLGKYKKGVMYFIRHRWMVWTSLAATIVLLVYLMSTTKTGLVPQEDQGVIM 572

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             ++  P       + +       +           +       G   +   ++  +K  
Sbjct: 573 VNVSISPGSTLEETTKVMDRLENILKDTPEIEHYARVAGYGLISGQGTSYGTIIVRLKDW 632

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                                + +    I     + I
Sbjct: 633 SERKGKEHGSDAVASRLNAQFQSIKEAQIFSFQPAMI 669



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 81/291 (27%), Gaps = 8/291 (2%)

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                    +         ++      Y +D +    + V     +        L+ +   
Sbjct: 750  YCGGAYISNYNQYGKVYRVMMQASPEYRLDEQALNNMFVRNGTEMAPVSQFVTLKQVLGP 809

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            + + +                  S    +V+E V  +   I                   
Sbjct: 810  ETANRFNLYSTITANVNPADGYSSGEVQKVIEEVAAESLPIGYGYEYGGMAREEASSGGA 869

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 I  + I  I  LI   +   +      I ++   +  +  F  + G+E N+    
Sbjct: 870  QTVF-IYAICIFLIY-LILACLYESFLVPFAVIFSVPFGLMGSFLFAKILGLENNIYLQT 927

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ LIG      +++ +     ++     +   +    +    L   + T +     +L
Sbjct: 928  GVIMLIGLLAKTAILITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGML 984

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+      G +   S    +  G+ V   + +F+     +     + K  +
Sbjct: 985  PLMFSSGAGANGNSSLGTGVVGGMAVGTVALLFVVPVFYIIFEYLQEKIRK 1035



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D ++V + ++   
Sbjct: 359 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIIVVEAVQSKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 419 DAGYK--SPYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496


>gi|66045719|ref|YP_235560.1| acriflavin resistance protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256426|gb|AAY37522.1| Acriflavin resistance protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 1036

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVNGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPREEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGRLRWVLKHQPLTLLVALATLALTVLLYIVVPKGFFPVQ 557



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIVLVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     +
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPR 495



 Score = 45.1 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                 S++    I  +        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRSVAPEQAIYDAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   ++F    I L+      + +R
Sbjct: 997  LLSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|285019494|ref|YP_003377205.1| rnd superfamily protein [Xanthomonas albilineans GPE PC73]
 gi|283474712|emb|CBA17211.1| probable rnd superfamily protein [Xanthomonas albilineans]
          Length = 1077

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 61/520 (11%), Positives = 150/520 (28%), Gaps = 48/520 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +  +G+L        +  +   P                   LV+   
Sbjct: 9   RRPIATTLLMAGVLLLGIL-----GYQRLPVSALPEIDAP-------------SLVVTTQ 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +   +    +     +    +         + I L FA  R  +  A  V  
Sbjct: 51  YPGANASTMASLVTTPLERQLGQISGLQMMTSDSSAGLSTIVLQFAMDRNIDIAAQDVQA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   S L        +        + +L+   +        + +         ++   
Sbjct: 111 AIRQ--SILPQSLPYQPVYNRVNPADAAILT-LKLSSDTLTLRDVNNYADSILAQRLSQV 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                   +  +   +  + +P++L  +  T   +       N +        +    S 
Sbjct: 168 PGVGLVSIAGNVRPAVRIQVNPAQLSNMGLTMEGLRSALTQTNVNAPKGSLNGKTQSYSI 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G    +    + S   ++                                  +   +   
Sbjct: 228 GTNDQLSSAADYSDTVIS--------------------YRNGAPVRLSDVAKVVDGVEND 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +   T+E    +   LR          V          
Sbjct: 268 QLAAWADGKPAVLLEVRRQPGANIVQTVENIRAILPQLRKVLPSGVHLDVFSDRTETIRA 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    K T  +  GLV+ V+F+ +      ++   ++ L++  T A+++  G +L   S+
Sbjct: 328 SVHEVKFTLILTIGLVVAVIFVFLRRLWATIIPSVAVPLSLAGTFAVMTFAGMSLDNLSL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +V+  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L
Sbjct: 388 MALVVATGFVVDDAIVMIENIVRYIEQGKSGREAAEIGARQIGFTVLSLTVSLVAVFLPL 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                  G     FA  + ++++ISM  ++++   M  ++
Sbjct: 448 ILMPGVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYL 487



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 90/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +         V++ R      +    + +   +        +    V L+ +     
Sbjct: 230 NDQLSSAADYSDTVISYRNGAPVRLSDVAKVVDGVENDQLAAWADGKPAVLLEVRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I  +  +I++
Sbjct: 290 NIVQTVENIRAILPQLRKVLPSGVHLDVFSDRTETIRASVHEVKFTLILTIGLVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   +     + L +  T       G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATIIPSVAVPLSLAGTFAVMTFAGMSLDNLSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S R+  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGREAAEIGARQIGFTVLSLTVSLVAVFLPLILMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 466 SIAVVISMLVSLTLTP 481



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 88/233 (37%), Gaps = 7/233 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L + ++          ++   V L +      + ++ +  +++   ++     +    
Sbjct: 823  TALANAKLATTPLVVSHQQQLPAVTLSFNLAPGYSLSQAVSAIEQTQAQLQLPQQVHAEF 882

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            I             +  ++ S + + I + + ++ +   L  I+TL       L    L 
Sbjct: 883  IGKAAEFNGSQTDVVWLLLASVVLIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMLC 942

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D     +       +  D I ++        + 
Sbjct: 943  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGANAHDAIRRACLLRFRPIMM 999

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            T+ AA +  LP+A+    G  +     + +  G++++   +++    I L++ 
Sbjct: 1000 TTAAAMLGALPLALGDGIGSELRRPLGLSIVGGLLLSQLVTLYTTPVIYLYME 1052


>gi|330503254|ref|YP_004380123.1| acriflavin resistance protein [Pseudomonas mendocina NK-01]
 gi|328917540|gb|AEB58371.1| acriflavin resistance protein [Pseudomonas mendocina NK-01]
          Length = 1030

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 64/550 (11%), Positives = 152/550 (27%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           +   P         L L              
Sbjct: 10  RPVATTLLMVAIFLSGLIA-----YRLLPVSALPEVDYPTIRVLTL---------YPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F           +V   +   
Sbjct: 56  PDVMTSAVTAPLERQFGQMAGLKQMSSTSSGGASVITLRFNLDVSLAVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + VL+   +        + +  +  +   ++  +     
Sbjct: 116 SNLLPGDLPAPPVYNKVNPADTPVLT-LAVSSKTLPLPQVNDLVDTRLAQKLAQTSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +P  L     + A +       N ++    F              
Sbjct: 175 VTLAGGQRPAVRIRVNPEALASYGLSLADVRSLITASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      +    AN   K+     ++                 I            
Sbjct: 224 ---------TRVAQLDANDQLKSVDEYRELILSYQNGAALRLKDVAEIIDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L  G        V          +    
Sbjct: 275 ANRNQAVLVNVQRQPGANVIDVVDRIQTLLPHLTEGLPASVEVKVLTDRTQTIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      ++    + L++I T  ++ L G T+   ++  + +
Sbjct: 335 QHELLLAIALVVMVTFLFLRKLSATIIPSIVVPLSLIGTFGVMYLAGFTINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENIARHLEEGETPLNAALKGARQIGFTLVSLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +K ++      +    I   I 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKAEKPENEGRFYQAVGGFIDAMIE 514

Query: 540 IQFMRARFWG 549
              +  ++  
Sbjct: 515 RYGVWLQWVL 524



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 65/149 (43%), Gaps = 9/149 (6%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+ ++++R K    +     + L +  T G   L G   N   + A+    G+
Sbjct: 340 LAIALVVMVTFLFLR-KLSATIIPSIVVPLSLIGTFGVMYLAGFTINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +  +   K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---ARHLEEGETPLNAALKGARQ-IGFTLVSLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAA 817
           V+      FAI +A  I+++   S+ +  
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTP 483



 Score = 41.6 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/90 (14%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +        ++    I ++        + T++AA    +P+ +    G  + 
Sbjct: 927  IMMIDFALE--AERHQGMAPEAAIYQAALLRFRPILMTTLAALFGAIPLMLASGSGAELR 984

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                + M  G++V+   ++F    I L+  
Sbjct: 985  QPLGLVMVGGLLVSQVLTLFTTPVIYLYFD 1014


>gi|325913800|ref|ZP_08176159.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937]
 gi|325539875|gb|EGD11512.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937]
          Length = 1082

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 58/564 (10%), Positives = 159/564 (28%), Gaps = 40/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +  +G+L        Q  +   P     + +                 
Sbjct: 9   RRPIATSLLMAGVLLLGIL-----GYRQLPVSALPEIDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R  +  +  V   ++ 
Sbjct: 55  NATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMDRDIDIASQDVQAAIRQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 115 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDSLPLREVNRYADAILAQRLSQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  +                      +        R        N+   +       
Sbjct: 232 QLTDAAQ--------------------YRETIISFANGRPVRLADVANVVDGVENDQLAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   L++         V          S   
Sbjct: 272 WADGKPAVLLEIRRQPGANIVQTVEQIRSILPQLQSVLPADVHLEVFSDRTETIRASVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T  +++  G +L   S+  +V
Sbjct: 332 VKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ISM  ++++   M  ++++   +   +             +
Sbjct: 452 GVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERAAAAGKTNL 511

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
             + +      +   +     ++ 
Sbjct: 512 WTRTVGVYERSLDWVLAHQPLTLA 535



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 84/230 (36%), Gaps = 12/230 (5%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                +   +        +    V L+ +        + +E ++  + ++  +       
Sbjct: 256 DVANVVDGVENDQLAAWADGKPAVLLEIRRQPGANIVQTVEQIRSILPQLQSVLPADVHL 315

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    +  +       K  + + I+ +  +I++++R  W   +     + L +  T G 
Sbjct: 316 EVFSDRTETIRASVHEVKFTLVLTIALVVAVIFVFLRRLW-ATIIPSVAVPLSLAGTFGV 374

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            A  G+  +  ++ A++   G+ V+D +V+ + +   ++      S  +  +    +   
Sbjct: 375 MAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI---VRYIEQGKSGPEAAEIGAKQIGF 431

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             +  +++     LP+ +  G        FA  ++  +V++   S+ +  
Sbjct: 432 TVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLSIAVVISMLVSLTLTP 481



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 87/249 (34%), Gaps = 11/249 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V A   + L+ +     +     +S Q           L      S A   + +  + 
Sbjct: 812  IVVGAGSIIPLASLAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVASIEKARED 871

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                    +              ++    +  ++ S + + I + + ++ +   L  I+T
Sbjct: 872  LKIPSQVHAQFVGKAAEFTGSQTDI----VWLLLASIVVIYIVLGVLYESYIHPLTIIST 927

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    + G+  ++  +  ++ LIG    + +++ D     +       +  +
Sbjct: 928  LPPAGVGALLALMMCGLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGANAHE 984

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+ AA +  LP+A+    G  +     I +  G++++   +++  
Sbjct: 985  AIRRACLLRFRPIMMTTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTT 1044

Query: 817  APILLFIYD 825
              I L++  
Sbjct: 1045 PVIYLYMER 1053


>gi|320663314|gb|EFX30619.1| multidrug efflux system subunit MdtB [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 1040

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LTVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|212710905|ref|ZP_03319033.1| hypothetical protein PROVALCAL_01973 [Providencia alcalifaciens DSM
           30120]
 gi|212686602|gb|EEB46130.1| hypothetical protein PROVALCAL_01973 [Providencia alcalifaciens DSM
           30120]
          Length = 1038

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 73/652 (11%), Positives = 166/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 18  RPVATTLFMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  S   +    +V   +   
Sbjct: 64  PDVMTSAITAPLETQFGQMSGLQQMSSRSSGGASVITLMFQLSLPLDVAEQEVQAAINSA 123

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     +          VL+   +        +    I  +   +I        
Sbjct: 124 TSLLPSDLPYPPIYNKVNPADPPVLT-LAVTSDAMPLTQVQDIIETRVAQKISQVTGVGL 182

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +P  +      +  +       N +     F              
Sbjct: 183 VTLAGGQRPAVRVNLNPQAMAAKGLDSETIRTAINNANVNSAKGSFDGP----------- 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+      +                 I +       G  
Sbjct: 232 ---------TRAVTLSANDQMKSLDDYRKLIVAFQNGAPVRLGDIATIEQGAENAYLGAW 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +          +   +   T +T   L   L           +          S +  
Sbjct: 283 ANSQQAIVINVQRQPGANVISTTDTIRALLPELIESLPASVNVDILTDRTSTIRASVNDV 342

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +  G   L+   ++ L+++ T A++   G ++   ++  + +
Sbjct: 343 QFELMLAIALVVMVIYLFLRNGIATLIPGIAVPLSLVGTFAVMYFCGFSVNNLTLMALTI 402

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +      +   G      TI     + +   + L F G 
Sbjct: 403 ATGFVVDDAIVVIENISRYLEQGDKPVVAALKGAGEIGFTIISLTFSLVAVLIPLLFMGD 462

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLI 534
             G   R FAIT+ ++ILIS   ++++   M   +             I       + + 
Sbjct: 463 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARLLKPESQHKHNRFEIACEHFFEWMIA 522

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              + ++ +    W      L ++    LL+          +    +         +S  
Sbjct: 523 GYGVWLKRVLNHQWLTLCVALGTLVLTVLLYMWIPKGFFPLQDSGIIQGTIESRQSISFA 582

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + +  ++  I   +   E             ++   R+   +K       
Sbjct: 583 AMSKKQQEVAGIILSDPAVENVTTYVGIDGNNATLNNARIQITLKPLDQRDD 634



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 346 LMLAIALVVMVIYLFLRNGI-ATLIPGIAVPLSLVGTFAVMYFCGFSVNNLTLMALTIAT 404

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 405 GFVVDDAIVVIENI---SRYLEQGDKPVVAALKGAGEIGFTIISLTFSLVAVLIPLLFMG 461

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 462 DIVGRLFREFAITLAVAILISAVVSLTLTP 491



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 92/285 (32%), Gaps = 6/285 (2%)

Query: 552  ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            +       +         N            +         V  + L ++Q G       
Sbjct: 748  MISTIYTQANQYRVILEHNTQTRDGMDALNDIRLKGTDGAMVPLNTLVNIQEGYGPLAIN 807

Query: 612  DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
              ++   V   +   +  +    +  VK     I    +I              +   + 
Sbjct: 808  HLDQFPSVTFSFDVAEGSSLESAVNAVKLAEKNIAMPKSITTQFQGATLAFEAALSSTVW 867

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +  + IAM I + I ++ +   +  ++TL       L    + G E ++ A+  ++ LI
Sbjct: 868  LIFAAIIAMYIVLGILYESFIHPITILSTLPTAGVGALLALMMAGNELDVIAIIGIILLI 927

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G    + +++ D            +S  D I ++        + T+MAA +  LP+ +  
Sbjct: 928  GIVKKNAIMMID--FALAAEREQGLSPYDAIYQACLLRFRPILMTTMAALLGALPLMLST 985

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G  +     + M  G++++   ++F    I L       +  R
Sbjct: 986  GVGAELRQPLGVCMVGGLIMSQILTLFTTPVIYLMFDRLAHRFNR 1030


>gi|182412944|ref|YP_001818010.1| acriflavin resistance protein [Opitutus terrae PB90-1]
 gi|177840158|gb|ACB74410.1| acriflavin resistance protein [Opitutus terrae PB90-1]
          Length = 1078

 Score =  158 bits (398), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 60/517 (11%), Positives = 143/517 (27%), Gaps = 33/517 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +        + S +  +G+++          +   P                  +  L  
Sbjct: 5   LSRPFIRRPVASALIALGVVLLGALAYGLLPVAPLPQVDFPTIQ---------VYAQLPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    +     +        +  Q    ITL F   R  +  A  V   + 
Sbjct: 56  ASPETMASSVATPLERALGSIAGVTAIRSNSTQGSTGITLEFDFDRDIDAAARDVQAAIN 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L     +N          + ++    +        E           ++      
Sbjct: 116 AARGQLPSGMPRNPSYRKVNPSSAPIM-ALALSSPNLAPGELYDVASTVLAQKLSQVTGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +       L  +  + +P+ L        ++                            
Sbjct: 175 GEVQVWGSALPAVRVQLNPNALAHYGIALDEVRQAIA--------------------QTN 214

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L    +   G        +   +       +                 +   +      
Sbjct: 215 SLRPRGLIEHGDRHWQVQVSGQLRKAAEYRSLIVRYRDGAPVRLSDVAAVTDSVENRYAS 274

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      +   +   +   TI+        LRA         +          +  
Sbjct: 275 GFHNDRAAVLLMVRRQPGANIAATIDAINAQLPGLRALVPADADLALVMDRSPGIRATLR 334

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  + A LV++V+   +   +  L+   +I +++I T A++ L G +L   S+  +
Sbjct: 335 EARFTLMLAATLVMLVVLAFLGSPRAALIPSLAIPVSLIATFAIMYLYGFSLNNLSLMAL 394

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++  GL VD  I+V E I     +  S   +   G      T+    ++ +   V + F 
Sbjct: 395 IVAAGLVVDDAIVVLENISRHIERGLSPVRAALKGAGEVGFTLLAMTLSLVTVFVSILFM 454

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG      R F+IT+  ++L+S+  ++++  ++    
Sbjct: 455 GGLVERLFREFSITLAAAMLVSLAVSLTLTPSLCSRW 491



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 73/211 (34%), Gaps = 6/211 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +VR Q     +     +   +      +   + +       P I   L       ++ + 
Sbjct: 286 MVRRQPGANIAATIDAINAQLPGLRALVPADADLALVMDRSPGIRATLREARFTLMLAAT 345

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + ML+ +        AL     + + +  T     L+G   N  ++ A++   G  V+D 
Sbjct: 346 LVMLVVLAFLGSPRAALIPSLAIPVSLIATFAIMYLYGFSLNNLSLMALIVAAGLVVDDA 405

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +     +S      K   E     +  +++     + +   GG V    
Sbjct: 406 IVVLENI---SRHIERGLSPVRAALKGAGEVGFTLLAMTLSLVTVFVSILFMGGLVERLF 462

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F+I +A  ++V+ + S+ +   +      
Sbjct: 463 REFSITLAAAMLVSLAVSLTLTPSLCSRWLK 493



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 49/119 (41%), Gaps = 5/119 (4%)

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G EF L A+  +  LIG  + + +++ D             + R  I ++    L   +
Sbjct: 933  TGTEFTLIALLGLFLLIGIVMKNAILMID--FALAAERKHGWAPRRAIFEAAQLRLRPIL 990

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             T++ A +  LP+      G  +     + +A G+VV+   ++F    I L +   R K
Sbjct: 991  MTNLCALLGSLPLVFATGEGVEMRRPLGLAIAGGLVVSQLLTLFTVPVIYLALDRLRVK 1049


>gi|330971259|gb|EGH71325.1| acriflavin resistance protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 1036

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVNGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPREEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGRLRWVLKHQPLTLLVALATLALTVLLYIVVPKGFFPVQ 557



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     +
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPR 495



 Score = 46.2 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I  +        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPEQAIYDAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   ++F    I L+      + +R
Sbjct: 997  LLSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|261880747|ref|ZP_06007174.1| AcrB/AcrD family multidrug resistance protein [Prevotella bergensis
           DSM 17361]
 gi|270332523|gb|EFA43309.1| AcrB/AcrD family multidrug resistance protein [Prevotella bergensis
           DSM 17361]
          Length = 1092

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/623 (10%), Positives = 164/623 (26%), Gaps = 44/623 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +GL+      L    ++++P   P               + +   
Sbjct: 8   KRPVLSTVISVFFVLLGLI-----GLVSLPIEQYPDIAPPT-------------ITVYTS 49

Query: 62  EDDFVNGF-LQMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVT 116
                    +      L   +   EG+   +          IT+ F      +  A  V 
Sbjct: 50  YQGADAKTVMNSVITPLEESINGVEGMTYMTSTATNSGSANITIFFKQGINPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    + L  +  +  +     +  ++++     +         +       +  +  
Sbjct: 110 NRVSQAQALLPAEVNRVGVTVLKRQTSNVIIYSLTTEDGRYDGKFLTNYNNINIVPLLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P +++Q       +       N        G +     
Sbjct: 170 VGGVGDVQSPSVADYSMRIWLRPDKMKQYGLVPTDIIGILSEQNIEAAPGSLGEQ---SD 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y +  K  +S                +    I   +      +      +     +
Sbjct: 227 MSYEYALRYKGRLS-------------TVPEFENIIITSKPTGETLYLKDVAKVELGSLM 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +    A  +               +    P  +  +E+       
Sbjct: 274 YSVNLKSNDKPAAMGMVQQVAGSNATQIATDVKEALDEAQKSMPPGMIYTIEQDVTEFLF 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV +V+++ +   +  L+   ++ + ++ T   L + G ++ L +
Sbjct: 334 ASIQEVVFTLVITLLLVFLVVYIFLQDIRSTLIPMIAVPVALMGTFLFLWMFGFSINLLT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ ++L I + VD  I+V E +  +  +   S   +     +     I    +      V
Sbjct: 394 LSALLLAIAIVVDDAIVVVEAVHAKLDQGYKSALTAAIDAMNEISGAIISITLVMSSVFV 453

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F GG +    R F ITM +SI+IS   A+++  A+          +  D    +   
Sbjct: 454 PVSFIGGTSGTFYREFGITMAVSIIISAINALTLSPALCAIF-LKPHKEEEDETNATFID 512

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
              +     F RA               I          G+                D  
Sbjct: 513 RFHNGFNRVFNRATEKYKKGVSRLIGHRIVTAIIVVAGIGVLIFSMATTSTGLVPNEDTG 572

Query: 593 VVRSNLESLQIGDISFQNFDGEK 615
            +   + +      S      ++
Sbjct: 573 TLFVTVSAAPGTSQSRTQQIVDQ 595



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 78/266 (29%), Gaps = 16/266 (6%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +    I + V A     +S   +        +I   N     N  +          
Sbjct: 801  RMRPEDMSNIYVRVGAGNMAPVSEFVTLKRVYGPSNIGRFNLFTAINLNITPNADYTSGD 860

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI--- 686
                  E+  + + E         T       +          +I     + +Y+ +   
Sbjct: 861  VLKACEEVAAEYLPEGYGYEYSGLTRSEAESSNS-------TALIFLLCFVFVYLILSAQ 913

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               +   L  + ++   +     F  LFG   ++    +++ LIG    + +++     +
Sbjct: 914  YESYLLPLSVLLSVPFGLAGAFLFTNLFGHSNDIYMQISLIMLIGLLAKNAILIVQFALE 973

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAF 803
              ++    ++ R          L   + TS+A  I +LP+    G               
Sbjct: 974  RRRM---GMALRYAAILGAAARLRPILMTSLALIIGLLPLMFASGVGKNGNQTLGAAAVG 1030

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAK 829
            G+++     +F+   + +     + +
Sbjct: 1031 GMLIGTLIQVFVVPALFVIFQWLQER 1056



 Score = 38.5 bits (87), Expect = 5.1,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 100/277 (36%), Gaps = 9/277 (3%)

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
           +S  +++     L T      I          L  + V    + S + S+ +        
Sbjct: 227 MSYEYALRYKGRLSTVPEFENIIITSKPTGETLYLKDVAKVELGSLMYSVNLKSNDKPAA 286

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            G    +         +  +  + E  K     ++       TE +   I   +    I 
Sbjct: 287 MGMVQQVAGSNATQIATDVKEALDEAQKSMPPGMIYTIEQDVTEFLFASIQEVVFTLVIT 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  +   +YI+++      L  +  + + +  T  F  +FG   NL  ++A+L  I 
Sbjct: 347 LLLVFLV---VYIFLQ-DIRSTLIPMIAVPVALMGTFLFLWMFGFSINLLTLSALLLAIA 402

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +   +       S       ++NE  G  +  ++      +P++  GG
Sbjct: 403 IVVDDAIVVVEAVHAKLDQGYK--SALTAAIDAMNEISGAIISITLVMSSVFVPVSFIGG 460

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +       F I MA  I+++A +++ ++  +      
Sbjct: 461 TSGTFYREFGITMAVSIIISAINALTLSPALCAIFLK 497


>gi|90418348|ref|ZP_01226260.1| multidrug efflux protein, AcrB/AcrD/AcrF family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90338020|gb|EAS51671.1| multidrug efflux protein, AcrB/AcrD/AcrF family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 1055

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/639 (12%), Positives = 183/639 (28%), Gaps = 51/639 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL            +   P+      IS+ +D  G         
Sbjct: 19  RRPVLTIVVNLLIVVAGLAA-----FGAIEVRELPNVDRP-VISVSIDFPG--------A 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    +   + +              +++T+ F D+      A  V   +  
Sbjct: 65  SPETVDRQITSEIESAVARVSGIASVSSKSEFGDSRVTIEFTDATDLNVAASDVRNAVSR 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L    ++  +V       +I+        +     + +  +  +  DQ+   E   
Sbjct: 125 IANSLPEGAEEPRIVKADADASAIMRLAVTAPGLSIE--DLTTLVEDRIADQLAAVEGVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +  + DP +L     T   +S               G            
Sbjct: 183 DLQIYGEREKVIYVDVDPDKLATRGLTLGTVSTALQNAALDVPAGSLGSPSQDLIVRADA 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E   I L+  T                              ++           
Sbjct: 243 NVTSPEEFETIFLDDRT------------------------RLGDVASVRFGPDDAASQL 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  S     +      A L           V   +     G+   
Sbjct: 279 RRNGETGVGMGVVRQAGSSTLDISDGIRAEVANLNETLPDGVTVRVTSDDATFINGAIHE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   +V+ V+F+ +L  +  ++   ++ + +I  +A + L+G ++ + ++  +V
Sbjct: 339 VEIALGISVAVVIFVIFLFLLNVRATIIPAVTMPIALIGVVAFIYLVGFSINILTLLALV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  G+ VD  I+V E I  +         +  +G    +  +  +  T     V + F  
Sbjct: 399 LATGMVVDDAIIVLENIVRQRDMGARPQAAAVLGTREVFFAVISTTATLAAVFVPISFLP 458

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFF 532
              GG  R F   + ++++IS F A+++   +  +        R        +       
Sbjct: 459 GQAGGLFREFGFVLAMAVVISSFIALTLCPMLAAYFLKAREAERRPGPFQRSVRWFGARL 518

Query: 533 LIPDCIAIQFMRARFWGVGISILFSIC--SICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                ++++F  A    + +          +  L         + +G + + + A +   
Sbjct: 519 AGMYAVSLRFCLAFPLLIVVGAGIFSFAAYLTFLQMPQELTPTEDRGVVLMSISAPQGAS 578

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           L    + L  ++   I +       N          +S 
Sbjct: 579 LEYTNAQLRRVEDVVIPYVENGEADNVFAISGRGSANSA 617



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/255 (10%), Positives = 78/255 (30%), Gaps = 7/255 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +  +    L  V S            +        +  ++     ++  +  +      
Sbjct: 252 TIFLDDRTRLGDVASVRFGPDDAASQLRRNGETGVGMGVVRQAGSSTLDISDGIRAEVAN 311

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA-IAMLIYIWIRFKWYFALGAITTL 700
           + E +P                  I +  + + IS  + + +           +    T+
Sbjct: 312 LNETLPDGVTVRVTSDDATFINGAIHEVEIALGISVAVVIFVIFLFLLNVRATIIPAVTM 371

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +   + F  L G   N+  + A++   G  V+D ++V + +   ++        +  
Sbjct: 372 PIALIGVVAFIYLVGFSINILTLLALVLATGMVVDDAIIVLENI---VRQRDMGARPQAA 428

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                 E     + T+       +P++      G +   F   +A  +V+++  ++ +  
Sbjct: 429 AVLGTREVFFAVISTTATLAAVFVPISFLPGQAGGLFREFGFVLAMAVVISSFIALTLCP 488

Query: 818 PILLFIYDWRAKNAR 832
            +  +    R    R
Sbjct: 489 MLAAYFLKAREAERR 503



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 79/227 (34%), Gaps = 15/227 (6%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +    R             + E           +       +   + +        + +
Sbjct: 802  TRENRSRAVSLSAQIPDNYSIQEGWTDLQVFAEEILPADQRLVPLAEAATLNETNSGLAL 861

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +     ++I + +      +  A   I T+ L +   +     FG+  NL +   ++ L+
Sbjct: 862  VFGFAIVIIILVLAAQFESFVSAFIIIATVPLGVACAIFALDFFGMSLNLYSQIGLVLLV 921

Query: 731  GYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            G    + +++ +   ++R+        +S R+ ++++    L   + T +A  +  +P+ 
Sbjct: 922  GIMAKNGILIVEFANQLREE------GLSVREAVEQAALIRLRPVMMTMIATVVGGVPLV 975

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    G     +    +  G+ +A  S++++     L +  +   NA
Sbjct: 976  LASGAGAEARVALGYVIVGGLGLATFSTLYVTPVAYLILGRFSTPNA 1022


>gi|184159386|ref|YP_001847725.1| cation/multidrug efflux pump [Acinetobacter baumannii ACICU]
 gi|183210980|gb|ACC58378.1| Cation/multidrug efflux pump [Acinetobacter baumannii ACICU]
          Length = 1032

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/629 (10%), Positives = 166/629 (26%), Gaps = 48/629 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP+      +                 
Sbjct: 9   KYPVFTIMMMLSLMVLGLAS-----WKRMTVEEFPNIDFPFVV---------VTTQYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +  + +   F         A  V   +  
Sbjct: 55  SPEAVESDITKKLEDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   +    ++         I+      +       + S  + ++ + Q+       
Sbjct: 115 VIAQFRDEIDTPIVQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  +  P +L+       ++       N          +        Q 
Sbjct: 173 NVNLLGDAKRQIRIKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                           D+          F      +    A +    
Sbjct: 233 KV--------------------IHPLGFGDLVIANKNGSPIFLKQVATVEDTQAELQSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    ++        L+A         V   +      S   
Sbjct: 273 FYNGRTAVSVDILKSSDANVIQVVDKTYQTLEKLKAQMPAALNYKVVADSSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VVRTIIEGAVLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+  ++LISMF + ++   +        K K   +     +       
Sbjct: 453 GLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKKESRLQRFFNYISNLLDG 512

Query: 539 AIQFM--------RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                        R RF  V I  +   +                 KG I++        
Sbjct: 513 LTHIYEKLLKLALRFRFITVIIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDS 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            L   ++ L  +      F +       +
Sbjct: 573 SLEYTQAKLHQVDQIIRQFPDVVSTYGVV 601



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 85/256 (33%), Gaps = 12/256 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+AN+      ++              +        V +           +V++   + +
Sbjct: 244 VIANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDILKSSDANVIQVVDKTYQTL 303

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRFKWYFALGAIT 698
            ++           V    S+ +           +  + +A+LI +     +   +    
Sbjct: 304 EKLKAQMPAALNYKVVADSSKGIRASIKDVVRTIIEGAVLAVLIVLLFLGSFRSTVITGL 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISF 757
           TL + +  TL F   FG   N+  + A+   IG  ++D +VV    R+N+  +T      
Sbjct: 364 TLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVV----RENIVRHTELGKDH 419

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIF 814
                    E     + T++      LP+A  GG +      F + ++  ++++   S  
Sbjct: 420 VTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTAVLISMFISFT 479

Query: 815 IAAPILLFIYDWRAKN 830
           +   +     D   K 
Sbjct: 480 LDPMLSAHWKDPVKKK 495



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 861  ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 920

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 921  MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 977

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 978  LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 1020


>gi|169632515|ref|YP_001706251.1| nodulation protein precursor [Acinetobacter baumannii SDF]
 gi|169151307|emb|CAP00011.1| nodulation protein precursor [Acinetobacter baumannii]
          Length = 1032

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/629 (10%), Positives = 166/629 (26%), Gaps = 48/629 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP+      +                 
Sbjct: 9   KYPVFTIMMMLSLMVLGLAS-----WKRMTVEEFPNIDFPFVV---------VTTQYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +  + +   F         A  V   +  
Sbjct: 55  SPEAVESDITKKLEDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   +    ++         I+      +       + S  + ++ + Q+       
Sbjct: 115 VIAQFRDEIDTPIVQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  +  P +L+       ++       N          +        Q 
Sbjct: 173 NVNLLGDAKRQIRIKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                           D+          F      +    A +    
Sbjct: 233 KV--------------------IHPLGFGDLVIANKNGSPIFLKQVATVEDTQAELQSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    ++        L+A         V   +      S   
Sbjct: 273 FYNGRTAVSVDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VVRTIIEGAVLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+  ++LISMF + ++   +        K K   +     +       
Sbjct: 453 GLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKKESRLQRFFNYISNLLDG 512

Query: 539 AIQFM--------RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                        R RF  V I  +   +                 KG I++        
Sbjct: 513 LTHIYEKLLKLALRFRFITVIIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDS 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            L   ++ L  +      F +       +
Sbjct: 573 SLEYTQAKLHQVDQIIRQFPDVVSTYGVV 601



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 8/218 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +             +  + ++K   ++      +        I   +       +  +
Sbjct: 282 VDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGA 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG  ++D
Sbjct: 342 VLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDD 401

Query: 737 KVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+  +T               E     + T++      LP+A  GG +  
Sbjct: 402 AIVV----RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGR 457

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F + ++  ++++   S  +   +     D   K 
Sbjct: 458 FFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKK 495



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 861  ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 920

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 921  MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 977

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 978  LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 1020


>gi|78049522|ref|YP_365697.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037952|emb|CAJ25697.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1082

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/564 (10%), Positives = 159/564 (28%), Gaps = 40/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +  +G+L        Q  +   P     + +                 
Sbjct: 9   RRPIATSLLMAGVLLLGIL-----GYRQLPVSALPEIDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R  +  +  V   ++ 
Sbjct: 55  NATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMERDIDIASQDVQAAIRQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 115 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDSLPLREVNRYADAILAQRLSQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  +                      +        R         +   +       
Sbjct: 232 QLTDAAQ--------------------YRETIISYKDGRPVRLADVAKVVDGVENDQLAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   LR+         V          S   
Sbjct: 272 WADGKPAVLLEIRRQPGANIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T  +++  G +L   S+  +V
Sbjct: 332 VKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ISM  ++++   M  ++++   +   +             +
Sbjct: 452 GVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERATAAGKTNL 511

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
             + + A    +   +     ++ 
Sbjct: 512 WTRTVGAYERSLDWVLAHQPLTLG 535



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 93/256 (36%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++ +      +    + +   +        +    V L+ +     
Sbjct: 230 NDQLTDAAQYRETIISYKDGRPVRLADVAKVVDGVENDQLAAWADGKPAVLLEIRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I+ +  +I++
Sbjct: 290 NIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHEVKFTLVLTIALVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   +     + L +  T G  A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S  +  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 466 SIAVVISMLVSLTLTP 481



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 89/234 (38%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L   ++ +        ++   V + +      + ++ +  ++K   E+   + +    
Sbjct: 823  AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKAREELKIPTQVHAQF 882

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +             +  ++ S + + I + + ++ +   L  I+TL       L    L 
Sbjct: 883  VGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMLC 942

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D     +       S  D I ++        + 
Sbjct: 943  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGASAHDAIRRACLLRFRPIMM 999

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA +  LP+A+    G  +     I +  G++++   +++    I L++  
Sbjct: 1000 TTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1053


>gi|168750412|ref|ZP_02775434.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757977|ref|ZP_02782984.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769832|ref|ZP_02794839.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775473|ref|ZP_02800480.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782362|ref|ZP_02807369.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4076]
 gi|168799039|ref|ZP_02824046.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC508]
 gi|195938269|ref|ZP_03083651.1| multidrug efflux system subunit MdtB [Escherichia coli O157:H7 str.
           EC4024]
 gi|208806501|ref|ZP_03248838.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817140|ref|ZP_03258232.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821152|ref|ZP_03261472.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399550|ref|YP_002271318.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4115]
 gi|254793860|ref|YP_003078697.1| multidrug efflux system subunit MdtB [Escherichia coli O157:H7 str.
           TW14359]
 gi|226700669|sp|B5YUD3|MDTB_ECO5E RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|187768940|gb|EDU32784.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015367|gb|EDU53489.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000133|gb|EDU69119.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355117|gb|EDU73536.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361227|gb|EDU79646.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4486]
 gi|189378400|gb|EDU96816.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC508]
 gi|208726302|gb|EDZ75903.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730759|gb|EDZ79449.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741275|gb|EDZ88957.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160950|gb|ACI38383.1| multidrug resistance protein MdtB [Escherichia coli O157:H7 str.
           EC4115]
 gi|209747962|gb|ACI72288.1| hypothetical protein ECs2883 [Escherichia coli]
 gi|209747964|gb|ACI72289.1| hypothetical protein ECs2883 [Escherichia coli]
 gi|254593260|gb|ACT72621.1| multidrug efflux system, subunit B [Escherichia coli O157:H7 str.
           TW14359]
 gi|326347045|gb|EGD70778.1| Multidrug transporter MdtB [Escherichia coli O157:H7 str. 1125]
          Length = 1040

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAITLVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAITLVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|159903257|ref|YP_001550601.1| preprotein translocase subunit SecD [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888433|gb|ABX08647.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9211]
          Length = 489

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 125/494 (25%), Positives = 222/494 (44%), Gaps = 52/494 (10%)

Query: 41  KNRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQ 95
                LGLDLRGGS L LEV          +  ++     L   +   G+   +++    
Sbjct: 24  SQPFQLGLDLRGGSQLTLEVQPTKDFPQIKDEQVEAVKAVLDRRVNSLGVSESTLQTIGT 83

Query: 96  NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           N++ L     +     A  +               K  +                     
Sbjct: 84  NQLILELPGEQEPSRAARVLGKTALLEFRAQKEGTKTEM--------------------- 122

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
                 + ++ +R  +  I IS+  I          +    ++ ++   L  TT      
Sbjct: 123 ------KRLQSLRSVLRNIAISKGVINDENGVFPDNEKQQLKNVNKSLGLKETT------ 170

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
                     F       +  +     + +  +++G  L  A    +       V ++F+
Sbjct: 171 -------GNDFEQLENLTKVINTRIVNLFEPSDLTGRDLVSAGRRQEQNLSSWEVTLTFN 223

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI-------NQAIPSGKAQISGNFTIETA 328
           + G  +F ++T+   G    + +     +              I  G A ISG FT ++A
Sbjct: 224 QSGGDKFSQLTKSIAGSERLLGIVLDGESISEASVGEQFKVAGITGGAATISGGFTADSA 283

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             L   LR GSLP  + I++ R +G  LGS++I +   A ++GL L+ +FM++ Y   GL
Sbjct: 284 RELEVQLRGGSLPSPVKIIQVRTIGPTLGSENIRRSLIASLSGLSLVAVFMVLFYRVPGL 343

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           VA  ++    +  +A+ +L+  TLTLP IAG +L IG+AVD+N+L+ ER+++E R+  ++
Sbjct: 344 VAVIALSFYALFNIAVYTLIPVTLTLPGIAGFILSIGMAVDANVLIFERVKDELRRGNTL 403

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             S+D GFS+A+S+I D +IT LI+   LF+ G G V+GF+ T+G+ ++IS+FTA+S  R
Sbjct: 404 IRSIDSGFSQAFSSIIDGHITTLISCTALFYLGTGFVKGFSATLGIGVVISLFTALSCTR 463

Query: 509 AMMIFIIRYKKMKS 522
            ++ F++ YK ++ 
Sbjct: 464 ILLRFLMSYKSLRR 477



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 75/176 (42%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E IR+ ++  +     + +++ + ++    L A+  L       +  + L  
Sbjct: 306 TIGPTLGSENIRRSLIASLSGLSLVAVFMVLFYRVP-GLVAVIALSFYALFNIAVYTLIP 364

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++      +    ID   ++     +  
Sbjct: 365 VTLTLPGIAGFILSIGMAVDANVLIFERVKDELR---RGNTLIRSIDSGFSQAFSSIIDG 421

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS   +   G   +  F+  +  G+V++  +++     +L F+  +++   
Sbjct: 422 HITTLISCTALFYLGTGFVKGFSATLGIGVVISLFTALSCTRILLRFLMSYKSLRR 477


>gi|289661823|ref|ZP_06483404.1| acriflavin resistance protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1082

 Score =  158 bits (398), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/564 (10%), Positives = 159/564 (28%), Gaps = 40/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +  +G+L        Q  +   P     + +                 
Sbjct: 9   RRPIATSLLMAGVLLLGIL-----GYRQLPVSALPEIDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R  +  +  V   ++ 
Sbjct: 55  NATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMERDIDIASQDVQAAIRQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 115 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDSLPLREINRYADAILAQRLSQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  +                      +        R        N+   +       
Sbjct: 232 QLTDAAQ--------------------YRETIISYKDGRPVRLADVANVVDGVENDQLAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   LR+         V          S   
Sbjct: 272 WADGKQAVLLEIRRQPGANIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T  +++  G +L   S+  +V
Sbjct: 332 VKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ISM  ++++   M  ++++   +   +             +
Sbjct: 452 GVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERATAAGKRNL 511

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
             + +      +   +     ++ 
Sbjct: 512 WTRTVGTYERSLDWVLAHQPLTLA 535



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 92/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++ +      +      +   +        +    V L+ +     
Sbjct: 230 NDQLTDAAQYRETIISYKDGRPVRLADVANVVDGVENDQLAAWADGKQAVLLEIRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I+ +  +I++
Sbjct: 290 NIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHEVKFTLVLTIALVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   +     + L +  T G  A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S  +  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 466 SIAVVISMLVSLTLTP 481



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 88/234 (37%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L   ++ +        ++   V + +      + ++ +  ++K    +   + +    
Sbjct: 823  AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKAREALKIPTQVHAQF 882

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +             +  ++ S + + I + + ++ +   L  I+TL       L    + 
Sbjct: 883  VGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMC 942

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D     +       +  D I ++        + 
Sbjct: 943  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGANAHDAIRRACLLRFRPIMM 999

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA +  LP+A+    G  +     I +  G++++   +++    I L++  
Sbjct: 1000 TTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1053


>gi|192293519|ref|YP_001994124.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
 gi|192287268|gb|ACF03649.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
          Length = 1050

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 82/683 (12%), Positives = 189/683 (27%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    ++   ++  +G +      + +      P                   +     
Sbjct: 11  RHPLPSIVFSIILLALGWISFTKLAVTRLPSADIPVIS--------------VAVSQFGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ FA     +   + V   +  
Sbjct: 57  APAELEAQVTKTIEDGVSGVEGVRHIASSITDGLSVTTIQFALETNTDRALNDVKDAVTR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +  + L+       + IV              + S  +       +       
Sbjct: 117 VRANLPQNINEPLIQRVDVIGLPIVTYAAISPGKTPE--QLSWFVDDVVKRALQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL+    T   +S      N    G    +     +     
Sbjct: 175 QVERIGGVEREILVSLDPDRLKAAGLTALDVSRRLRGTNVDLAGGRAEIGNNDQAIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +++G  ++                                  +   +A      
Sbjct: 235 GARTLNDLAGTMISLNA--------------------GGEVRLDDLGTVTDTIAARHTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S     E        L+A    ++L +++  +V    G+   
Sbjct: 275 RFNGEPVVALGIKRSKGASDVVVAEAVQKRIDALKAQYPDVELKLIDT-SVDYTKGNYEA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  ++A  S+ L++      + +LG +L L S   I 
Sbjct: 334 AISTLFEGAILAVIVVFLFLRDFRATVIAAISLPLSIFPAFWAMDMLGFSLNLVSFLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A   I  + I        + 
Sbjct: 394 LSTGILVDDAIVEIENIVRHMRMGKSPYQAAIEAADEIGLAVIAISLTIIAIFAPASFMS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ + +  S+  A  +   +  + ++           + R +      
Sbjct: 454 GIAGQFFKQFGITVSVQVFFSLLAARFVTPVLAAYFLKDHPHVEKPPGRVLRAYTRIVTW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV--VRS 596
           ++Q               SI SI LL    L      +  + + +     +  +     +
Sbjct: 514 SVQHYYITVLIGLGIFAASIWSIVLLPQGFLPAQDTARSVLAMQLPPGTQIGTTEKTTEA 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++ L+        F         +Q     S+      +  +      +     +  + 
Sbjct: 574 IVKLLRERPEVKSVFVDGGRVPPGIQEVRRASLIINYTPKHDRSITQRELEHVISRQLDQ 633

Query: 657 VGPKISRELIRKGIVGVIISAIA 679
           V       L   G+  + +    
Sbjct: 634 VPDIRYWFLDENGLRAISLVVTG 656



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + A   V L  + +  +++       +        L   + +    V     ++   
Sbjct: 246 MISLNAGGEVRLDDLGTVTDTIAARHTFARFNGEPVVALGIKRSKGASDVVVAEAVQKRI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P   ++  +                    + +A+++       +   + A  +
Sbjct: 306 DALKAQYPDVELKLIDTSVDYTKGNYEAAISTLFEGAILAVIVVFLFLRDFRATVIAAIS 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I        + G   NL +  A+    G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSIFPAFWAMDMLGFSLNLVSFLAITLSTGILVDDAIVEIENI---VRHMRMGKSPYQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     +  S+           + G  G     F I ++  +  +  ++ F+ 
Sbjct: 423 AAIEAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARFVT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PVLAAYFLK 491



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL       +    + +   + + F  +   +  + +L L I   +G   L G +    
Sbjct: 839  AELSDGFATAISGGLMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIGALLLTGKQLTTP 898

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
                +L L+G    + +++ +   + M+   +  +    I  +  +     V T++A   
Sbjct: 899  VWIGILMLMGIVTKNAIMLIEFAMEAMREGKSRDA---AIIDAGQKRARPIVMTTIAMVA 955

Query: 782  SVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + P A+    GG      A+ +  G++ +   S+     + + + D
Sbjct: 956  GMTPSALAFGAGGEFRSPMALAVIGGLIFSTVLSLIFVPAVFMMMDD 1002


>gi|119963786|ref|YP_948034.1| preprotein translocase subunit SecD [Arthrobacter aurescens TC1]
 gi|119950645|gb|ABM09556.1| protein-export membrane protein SecD [Arthrobacter aurescens TC1]
          Length = 583

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 107/525 (20%), Positives = 183/525 (34%), Gaps = 34/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    +    +L          ++    S  P     L LDL GG+ ++L    
Sbjct: 11  RRVLTWLGAIFVVLTAVLAG-------GVVTGNASWAP----KLALDLEGGTQMILAPRV 59

Query: 63  D---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           +   +     L      +R  +   G+    +     +  +        +   D +    
Sbjct: 60  EGSSEINEEQLNQAVAIIRQRVDGSGVAEAEISTQSGRNVVVSLPGTPSKETRDLIQASA 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 +        +          +          S        +    + +    + 
Sbjct: 120 DMNFRPVITYGDPAAVPAEQRTPDDQLPKPTAEPANASDI----NWVTADIVKEFEALDC 175

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       +     DP++           +     P          VR    SD  
Sbjct: 176 VNP-------SPEKRERSDPAKPL-----VTCEAATAQTPAIKYILGPVEVRGQDISDST 223

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+                    T K                    D+     A+VLD
Sbjct: 224 FSQVQGAQGSVTNSWGVNIVFNADATAKFKAVTERLNQFYAAAQLQGSDDPKSQFAIVLD 283

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            +V++AP     I  GK QI+GNFT  +A  L+  LR G+LPI   I  +  + A LG D
Sbjct: 284 DKVISAPRALAVITDGKPQITGNFTQASAKALSDQLRYGALPISFEIQSQEQISATLGGD 343

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT----LP 415
            +  G  A + GL+L+V++ +  Y   GLV   S+ +  +LT   +++LG T      L 
Sbjct: 344 QLRLGLLAGMIGLLLVVVYSLFQYRALGLVTIASLVVAGVLTYLAIAILGWTENYRLSLA 403

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            +AG+++ IG   DS I+  ERIR+E R+ + +  +++ G+ RA  T+  S    L+A V
Sbjct: 404 GVAGLIVAIGQTADSFIVYFERIRDELREGRGLVSAVENGWKRAKRTVLASKAVNLLAAV 463

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           VL+F   G VRGFA T+GL+ +  +          +  + R K  
Sbjct: 464 VLYFVAVGNVRGFAFTLGLTAVADLIVVFMFTHPTLQLLARTKFF 508



 Score = 95.1 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 70/185 (37%), Gaps = 10/185 (5%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              IQ+ E +   +  + +R G++  +I  + +++Y   +++    L  I +L++    T
Sbjct: 327 SFEIQSQEQISATLGGDQLRLGLLAGMIGLLLVVVYSLFQYR-ALGLVTIASLVVAGVLT 385

Query: 708 LGFFALFGIE----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               A+ G       +L  VA ++  IG + +  +V ++R+R  ++           ++ 
Sbjct: 386 YLAIAILGWTENYRLSLAGVAGLIVAIGQTADSFIVYFERIRDELRE---GRGLVSAVEN 442

Query: 764 SINETLGRSVYTS-MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                  R+V  S     ++ + +       +  FA  +    V           P L  
Sbjct: 443 GWKRA-KRTVLASKAVNLLAAVVLYFVAVGNVRGFAFTLGLTAVADLIVVFMFTHPTLQL 501

Query: 823 IYDWR 827
           +   +
Sbjct: 502 LARTK 506


>gi|304397447|ref|ZP_07379325.1| acriflavin resistance protein [Pantoea sp. aB]
 gi|304355065|gb|EFM19434.1| acriflavin resistance protein [Pantoea sp. aB]
          Length = 1040

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/679 (10%), Positives = 186/679 (27%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGVL-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVVTLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPNDLPNPPVYSKVNPADPPIMT-LAVTTRSMPLTQVQDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  T+  +       N +                    
Sbjct: 184 VTLSGGQRPAVRVKMNAQALAALGLTSETVRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +    +                 I +       G  
Sbjct: 236 ------------ITLSANDQMKSAEDYRQLIISYKNGAPVRLGDVATIEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    +   L           +          S +  
Sbjct: 284 ANRDAAIVLNVQRQPGANIIATADNIRAMLPALTETLPKSVEVKLLTDRTTNIRASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      L+   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELILAMALVVMIIYLFLRNVPATLIPAVAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +    +   +    +A
Sbjct: 464 VIGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSAESLRKQNRFSRASEAMFDRIVA 523

Query: 540 IQFMRAR----FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL---GVLANRPVDLS 592
                 +       + +S+      + LL    +  G   +    +    + A + V  +
Sbjct: 524 AYGRGLKRVLNHPWLTLSVALGTLVLTLLLWMVIPKGFFPQQDNSIIQGTLQAPQSVSYA 583

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +      +    +     +   +F+         + A+ ++      +  + +P    +
Sbjct: 584 SMAERTRDVASIIMKDPAVESMTSFVGVDGTNASLNSARLQINLKPLDQRDDRIPAIQQR 643

Query: 653 NTEIVGPKISRELIRKGIV 671
             + V      +L  + + 
Sbjct: 644 LQQQVSQLPGVQLWLQAVQ 662



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 347 LILAMALVVMIIYLFLR-NVPATLIPAVAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DVIGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|224827223|ref|ZP_03700318.1| acriflavin resistance protein [Lutiella nitroferrum 2002]
 gi|224600616|gb|EEG06804.1| acriflavin resistance protein [Lutiella nitroferrum 2002]
          Length = 1030

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/542 (11%), Positives = 148/542 (27%), Gaps = 33/542 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               L  + + +C + L++          +   P                    +     
Sbjct: 5   RPFILRPIATTLCMLALVLTGWVAYKLLPVSALPQVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S     + ITL F      +    +V   +   
Sbjct: 56  PEVMGAMVSSPLERQFGQMPGLSQMRTSSSGGASVITLQFTLDIALDEAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S L  D     +        S ++S   I        +    +  +   ++        
Sbjct: 116 SSLLPADLPSPPIYNKVNPADSPIVS-LAITSPTLPLPKLEDLVDTRLAQKLSQLSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    D   L     T A +       N  +    F       S      
Sbjct: 175 VSLSGGQRPAVRIRADARALAANGLTLADLRSAIGSANVKQSKGGFDGPLQASSIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                            +                ++   +     G  
Sbjct: 235 LASS--------------------DDYRRLVLAYKNGAPLRLSDVASVVDEVENRRLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L+A         +          +    
Sbjct: 275 ANRSPAIIVDIRRQPGANVIEVVDRIKTLLPQLKATLPGSVDVTLLSDRTDGIRAAVHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      L+   ++ L+++ T  ++ L G +L   ++  + +
Sbjct: 335 EFELMLAVALVVMVIFLFLRNVPATLIPGVTVPLSLVGTFGVMYLAGFSLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G ++   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYIEEGDSPLQAALKGSAQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ +SIL+S   ++S+   M   ++++   +       +    I   IA
Sbjct: 455 VVGRLFREFAVTLAVSILLSAAISLSLTPMMCARLLKHVPEEKQGRFYHASGAFIDGMIA 514

Query: 540 IQ 541
             
Sbjct: 515 RY 516



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 64/150 (42%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + M+I++++R      L    T+ L +  T G   L G   N   + A+    
Sbjct: 338 LMLAVALVVMVIFLFLR-NVPATLIPGVTVPLSLVGTFGVMYLAGFSLNNLTLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +      S      K   +     +  + +    ++P+   G
Sbjct: 397 GFVVDDAIVMIENI---ARYIEEGDSPLQAALKGSAQIGFTIISLTFSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A+ S+ +  
Sbjct: 454 DVVGRLFREFAVTLAVSILLSAAISLSLTP 483


>gi|160884884|ref|ZP_02065887.1| hypothetical protein BACOVA_02874 [Bacteroides ovatus ATCC 8483]
 gi|156109919|gb|EDO11664.1| hypothetical protein BACOVA_02874 [Bacteroides ovatus ATCC 8483]
          Length = 1059

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/697 (10%), Positives = 174/697 (24%), Gaps = 55/697 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P               + +   
Sbjct: 8   KRPVMAISISVLILAIGLISLF-----TLPVEQYPDIAPPT-------------VYVTAS 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +      L   +        I   +       I + F      +  A  V 
Sbjct: 50  YTGADAEAVMNSVIMPLEESINGVEDMMYISSSASNAGLAIIQVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 110 NRVAKAQGLLPAEVTKVGVSTMKRQTSFLQIGALVCTDGRYDQTFLANYLDINVIPQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDITAILGEQNIEAPTGSLGESSKNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +                 +      
Sbjct: 229 Q----------------FTMKYRGRLKSVEEFRNTVVRSREDGSILRLQDVAEVELGTMT 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +          +    +     
Sbjct: 273 YSFRSEMDSQPAVLYMIFQTAGSNATAVNKEITAQIERMEKNLPAGTEFVTMMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 333 ASIHNVVETLIIAIILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIVSCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL---- 528
            + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +      
Sbjct: 453 PVTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 529 ------SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                     L      + F     W V  S+  ++  +  L +      +  +    + 
Sbjct: 513 AAYNASFNAVLGKYKRGVMFFIRHRWMVWTSLAVAVALLVYLMSTTKTGLVPQEDQGVIM 572

Query: 583 VLANRPVDLS-VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
           V  +     +    + +       +           +       G   +   ++  +K  
Sbjct: 573 VNVSISPGSTLEETTKVMDRLENILKDTPEIEHYARVAGYGLISGQGTSYGTMIIRLKDW 632

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                   +            + +    I     + I
Sbjct: 633 SERKGKEHSSDAVVSRLNGQFQSIKEAQIFSFQPAMI 669



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 80/291 (27%), Gaps = 8/291 (2%)

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                    +         ++      Y +D +    + V     +        L+ +   
Sbjct: 750  YCGGAYISNYNQYGKVYRVMMQASPEYRLDEQALNNMFVRNGTQMAPVSQFVTLKQVLGP 809

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            + + +                  S    +V+E V  +                       
Sbjct: 810  ETANRFNLYSTITANVNPADGYSSGEVQKVIEEVAAQSLPAGYGYEYGGMAREEASSGGA 869

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 I  + I  I  LI   +   +      I ++   +  +  F  + G+E N+    
Sbjct: 870  QTVF-IYAICIFLIY-LILACLYESFLVPFAVIFSVPFGLMGSFLFAKILGLENNIYLQT 927

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ LIG      +++ +     ++     +   +    +    L   + T +     +L
Sbjct: 928  GVIMLIGLLAKTAILITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGML 984

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+      G +   S    +  G+ V   + +F+     +     + K  +
Sbjct: 985  PLMFSSGAGANGNSSLGTGVVGGMAVGTLALLFVVPVFYIIFEFLQEKIRK 1035



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 359 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 419 DAGYK--SPYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496


>gi|237716962|ref|ZP_04547443.1| multidrug resistance protein mexB [Bacteroides sp. D1]
 gi|262405731|ref|ZP_06082281.1| multidrug resistance protein mexB [Bacteroides sp. 2_1_22]
 gi|294644467|ref|ZP_06722228.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CC 2a]
 gi|229442945|gb|EEO48736.1| multidrug resistance protein mexB [Bacteroides sp. D1]
 gi|262356606|gb|EEZ05696.1| multidrug resistance protein mexB [Bacteroides sp. 2_1_22]
 gi|292640189|gb|EFF58446.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CC 2a]
          Length = 1059

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/697 (10%), Positives = 174/697 (24%), Gaps = 55/697 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P               + +   
Sbjct: 8   KRPVMAISISVLILAIGLISLF-----TLPVEQYPDIAPPT-------------VYVTAS 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +      L   +        +   +       I + F      +  A  V 
Sbjct: 50  YTGADAEAVMNSVIMPLEESINGVEDMMYVSSSASNAGLAIIQVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 110 NRVAKAQGLLPAEVTKVGVSTMKRQTSFLQIGALVCTDGRYDQTFLANYLDINVIPQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDITAILGEQNIEAPTGSLGESSKNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +                 +      
Sbjct: 229 Q----------------FTMKYRGRLKSVEEFRNTVVRSREDGSILRLQDVAEVELGTMT 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +          +    +     
Sbjct: 273 YSFRSEMDSQPAVLYMIFQTAGSNATAVNKEITTQIERMEKNLPEGTEFVTMMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 333 ASIHNVVETLIIAIILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIVSCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL---- 528
            + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +      
Sbjct: 453 PVTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 529 ------SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                     L      + F     W V  S+  ++  +  L +      +  +    + 
Sbjct: 513 AAYNASFNAVLGKYKRGVMFFIRHRWMVWTSLAVAVALLVYLMSTTKTGLVPQEDQGVIM 572

Query: 583 VLANRPVDLS-VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
           V  +     +    + +       +           +       G   +   ++  +K  
Sbjct: 573 VNVSISPGSTLEETTKVMDRLENILKDTPEIEHYARVAGYGLISGQGTSYGTIIIRLKDW 632

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                   +            + +    +     + I
Sbjct: 633 SERKGKEHSSDAVVSRLNGQFQAIKEAQVFSFQPAMI 669



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 80/291 (27%), Gaps = 8/291 (2%)

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                    +         ++      Y +D +    + V     +        L+ +   
Sbjct: 750  YCGGAYISNYNQYGKVYRVMMQASPEYRLDEQALNNMFVRNGTQMAPVSQFVTLKQVLGP 809

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            + + +                  S    +V+E V  +                       
Sbjct: 810  ETANRFNLYSTITANVNPADGYSSGEVQKVIEEVAAQSLPAGYGYEYGGMAREEASSGGA 869

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 I  + I  I  LI   +   +      I ++   +  +  F  + G+E N+    
Sbjct: 870  QTVF-IYAICIFLIY-LILACLYESFLIPFAVIFSVPFGLMGSFLFAKILGLENNIYLQT 927

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ LIG      +++ +     ++     +   +    +    L   + T +     +L
Sbjct: 928  GVIMLIGLLAKTAILITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGML 984

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+      G +   S    +  G+ V   + +F+     +     + K  +
Sbjct: 985  PLMFSSGAGANGNSSLGTGVVGGMAVGTLALLFVVPVFYIIFEFLQEKIRK 1035



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 359 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 419 DAGYK--SPYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496


>gi|170769786|ref|ZP_02904239.1| multidrug resistance protein MdtB [Escherichia albertii TW07627]
 gi|170121400|gb|EDS90331.1| multidrug resistance protein MdtB [Escherichia albertii TW07627]
          Length = 1040

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/586 (10%), Positives = 153/586 (26%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGLI-----GYRVLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTSMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FAIT+ ++ILIS   ++++   M   +       K+ +    +      +I 
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                         + +S+  S   + +L    +  G        +
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWLFIPKGFFPVQDNGI 569



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|167647270|ref|YP_001684933.1| acriflavin resistance protein [Caulobacter sp. K31]
 gi|167349700|gb|ABZ72435.1| acriflavin resistance protein [Caulobacter sp. K31]
          Length = 1046

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 71/604 (11%), Positives = 159/604 (26%), Gaps = 43/604 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +  + I   GL+      L       +P+                   +    
Sbjct: 9   QRPVATALFMAAIVLAGLVGFKLLPLSALPQVDYPTIQ--------------IQTLYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +     +              + ITL F+     +    +V   + G
Sbjct: 55  SPEVMSQTVTAPLERQLGEMAGLARMSSVSTAGASIITLQFSLGEGLDVAEQEVQAAING 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            NS L  D     +        + VL+   +        +    +  +   +I       
Sbjct: 115 ANSLLPADLPAPPVYAKVNPADAPVLT-LAVTSDTLPLTQVQNLVNTRLAQKISQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +  + D   +     T A +       N +     F       +     
Sbjct: 174 LVSLSGGQRPAIRIQADTQAMASYGVTLANVQSAISNANANSAKGSFDGPTRSYTINAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                       +                 + +       G 
Sbjct: 234 QLLTVED--------------------YSSLIVSYKNGAPIRLRDIAQVVQSAENTRLGA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L           V         GS   
Sbjct: 274 WANTTPAIIVNVQRQPGANVIATVDAIKAKLPELEEALPSTLEVKVLADRTTGIRGSVHH 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   +V++V+F  +   +  L+A  ++ +++I +  ++ L+G +L   S+  + 
Sbjct: 334 VEMELLLAVVMVVVVIFFFLHSLRATLIAGLAVPISLIGSCGVMYLMGFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     K      +   G      TI    ++ +   + L F G
Sbjct: 394 IATGFVVDDAIVMIENISRHLEKGVKPMAAALRGAREIGFTIISLTVSLIAVLIPLLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   R FAIT+ ++ILIS   ++++   +            +   S     L     
Sbjct: 454 DVVGRLFREFAITLAITILISAVVSLTLTPMLSARWLKPEGEEKQGRISQKSKALFDKVE 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 + ++  R     +  + +      L+          +   QL         +S 
Sbjct: 514 HHYERGLTWVLKRQKATLVVAVATFALTAALYMVIPKGLFPTQDTGQLQARTEVEQSVSY 573

Query: 594 VRSN 597
            R  
Sbjct: 574 DRMA 577



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 8/150 (5%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L A   + + +  + G   L G   N  ++ A+    G+ V+D +V+ + +    
Sbjct: 355 SLRATLIAGLAVPISLIGSCGVMYLMGFSLNNLSLMALTIATGFVVDDAIVMIENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +     +       +   E     +  +++    ++P+   G   G +   FAI +A  I
Sbjct: 412 RHLEKGVKPMAAALRGAREIGFTIISLTVSLIAVLIPLLFMGDVVGRLFREFAITLAITI 471

Query: 806 VVAASSSIFIAAPILLFIY--DWRAKNARI 833
           +++A  S+ +   +       +   K  RI
Sbjct: 472 LISAVVSLTLTPMLSARWLKPEGEEKQGRI 501



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                   S RD I ++        + T++AA  + +P+ +    GG +     I +  G+
Sbjct: 935  AQRNQGKSPRDAIFQAAILRFRPILMTTLAALFAAVPLMLSFGEGGELRRPLGIAIFGGL 994

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +V+   ++F    I L    
Sbjct: 995  LVSQLLTMFTTPVIYLAFDR 1014


>gi|218699332|ref|YP_002406961.1| multidrug efflux system subunit MdtB [Escherichia coli IAI39]
 gi|226700670|sp|B7NQB1|MDTB_ECO7I RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|218369318|emb|CAR17076.1| multidrug efflux system, subunit B [Escherichia coli IAI39]
          Length = 1040

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 170/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +      +          + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNSAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFT 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|302186198|ref|ZP_07262871.1| acriflavin resistance protein [Pseudomonas syringae pv. syringae
           642]
          Length = 1036

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLDINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGRLRWVLKHQPLTLLVALATLALTVLLYIVVPKGFFPVQ 557



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.5 bits (105), Expect = 0.035,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I  +        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPEKAIYDAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   ++F    I L+      + +R
Sbjct: 997  LLSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|71892012|ref|YP_277742.1| preprotein translocase subunit SecD [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796118|gb|AAZ40869.1| preprotein translocase, auxillary membrane component [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 619

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 150/519 (28%), Positives = 271/519 (52%), Gaps = 37/519 (7%)

Query: 32  LDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM 91
           +  + SA+    I LGLDL GG + V+  +    ++ F + Y + LR  L ++ I    +
Sbjct: 113 IPHWLSAIKAKPIKLGLDLCGGIYFVIHANTKTVLDKFQEQYINSLRVILFEKNIPYLQI 172

Query: 92  -RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
            +   N I ++F +S ++                 L+    + +L      ++ ++ S+ 
Sbjct: 173 YKIKNNDIEINFKNSNYRNKAI-----------LPLSKIDNELILYAIGTNKLHVIFSER 221

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
             + +  HAI Q+  I+  RI Q+GI+E  +QR GS RI+I+LPG QD  ++R++LGTTA
Sbjct: 222 KKNAIREHAIHQNCTILHHRIHQLGITEPLVQRHGSDRIIIELPGFQDIEKIREMLGTTA 281

Query: 211 KMSFHKVLP-----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
            + F  V         +             ++G    +  ++ +SG ++  +      + 
Sbjct: 282 SLEFRLVNSTISEFKINNNLIPEDSEIKLSNNGYLVPLYKQIVLSGDNIINSNV-GLDEY 340

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGK------------------PLAVVLDGRVLTAPV 307
           ++P V+IS D+ G+      T++NIGK                    A+++    +    
Sbjct: 341 NRPQVNISLDKTGSISISNFTKNNIGKAIATLFVEYKDSGKKDSKGHAILIKHEKVINIA 400

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             Q+  S   +ISG   +  A  L+ +LR G+L   ++I EER +G  LG  +I +G  A
Sbjct: 401 TIQSQLSDNFRISGINNLNEARHLSLLLRMGNLAAPIHIEEERMIGPTLGKQNIVRGFIA 460

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGL 426
              GL+  + FMI+ Y  +GL+A  ++  N+IL ++ +S++    LT+PSI GIVL + +
Sbjct: 461 CSLGLLTSICFMILWYHYFGLIASVALIANLILMISTMSIVPGIVLTMPSIVGIVLTLSV 520

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+N+L+NERI+EE +K + V  ++  G+ +A+++I D+NIT +I +++L+  G G ++
Sbjct: 521 AVDANVLINERIKEEIKKGKPVQYAIYTGYRKAFTSIVDANITTIITSIILYLIGTGPIK 580

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           GFAIT  + +  SMFT+I   RA++  +   +++  + I
Sbjct: 581 GFAITTIIGVGTSMFTSIVGTRAVVNLVYGKRRINKLSI 619



 Score =  112 bits (279), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D     S   ++ I      N    ++ L       G +         +  ++  
Sbjct: 373 FVEYKDSGKKDSKGHAILIKHEKVINIATIQSQLSDNFRISGINNLNEARHLSLLLRMGN 432

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           +     I+   ++GP + ++ I +G +   +  +  + ++ + + + F L A   LI ++
Sbjct: 433 LAAPIHIEEERMIGPTLGKQNIVRGFIACSLGLLTSICFMILWYHY-FGLIASVALIANL 491

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +   ++  GI   + ++  ++  +  +V+  V++ +R+++ +K        +  I  
Sbjct: 492 ILMISTMSIVPGIVLTMPSIVGIVLTLSVAVDANVLINERIKEEIK---KGKPVQYAIYT 548

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +     V  ++   I+ + + + G   I  FAI    G+  +  +SI     ++  +
Sbjct: 549 GYRKAFTSIVDANITTIITSIILYLIGTGPIKGFAITTIIGVGTSMFTSIVGTRAVVNLV 608

Query: 824 YDWRAKNA 831
           Y  R  N 
Sbjct: 609 YGKRRINK 616



 Score = 39.3 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 16/118 (13%), Positives = 33/118 (27%), Gaps = 22/118 (18%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              W  +   ++   G++  LP+                                LE + 
Sbjct: 5   YPLWKYLTVILVFVTGIIYTLPSLYRDYPTIYIAQCA------------------LEQNY 46

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            +  +  L      ++  L  E I   S+    NKI + F   + +     K++    
Sbjct: 47  QEMDDILLCQ----IKKILAYEKIINKSIVSQANKIRIQFFHEQDQLQAYQKLSTIFS 100


>gi|191170183|ref|ZP_03031737.1| multidrug resistance protein MdtB [Escherichia coli F11]
 gi|300981667|ref|ZP_07175653.1| putative ATP synthase F0, A subunit [Escherichia coli MS 200-1]
 gi|190909699|gb|EDV69284.1| multidrug resistance protein MdtB [Escherichia coli F11]
 gi|300307468|gb|EFJ61988.1| putative ATP synthase F0, A subunit [Escherichia coli MS 200-1]
 gi|324013876|gb|EGB83095.1| putative ATP synthase F0, A subunit [Escherichia coli MS 60-1]
          Length = 1040

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 69/652 (10%), Positives = 168/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSESVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFPEFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 57/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 GSVIG---SFAIPMAFGIVVAASSSIFIAA 817
             V      FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFPEFAITLAVAILISAVVSLTLTP 492


>gi|329962314|ref|ZP_08300320.1| heavy metal efflux pump, CzcA family [Bacteroides fluxus YIT 12057]
 gi|328530422|gb|EGF57299.1| heavy metal efflux pump, CzcA family [Bacteroides fluxus YIT 12057]
          Length = 1037

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/616 (11%), Positives = 171/616 (27%), Gaps = 49/616 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPIDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENVLNSVSNLKHITSRSSENMSLITLEFEFGNDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  D +  ++   +   I IVL     ++           +  + ++ +       
Sbjct: 115 VSSELPDDVENPIIFKFSTDMIPIVLLSVQANE---SQAALYKILDDRVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP +L     +   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPQREIQVYCDPYKLEAYNLSIETISSIIGAENRNIPGGNFDIGNETYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  ++  + +                            +      +   +       
Sbjct: 232 EFDDSRQLEDVVVGTY--------------------NGASVYLRDVAKVVDTVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVEISKKVQQALPRLQKNLPSDVKLGVIVDTSENILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G T+ + S++ + 
Sbjct: 332 LTETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIASFIYLAISGNTINIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSDPKQAAVHGTNEVAISVVASTLTMIAVFFPLTMVS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
           G +    +     M   + IS   A+S+   +   +               K I+     
Sbjct: 452 GMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLLRLQRKQSKAFTLFFKPIERVLDG 511

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +           VG  + F +  +C        +       I + +      
Sbjct: 512 LDNGYARMLNWAVRHRVSVLVGCVVFFVLSLLCAKTIGTEFFPAQDNARIAVQLELPIGT 571

Query: 590 DLSVVRSNLESLQIGD 605
              V R   E L    
Sbjct: 572 RKEVARDISEKLTNQW 587



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 93/248 (37%), Gaps = 7/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V   +++++       N   +   +V  +    +SV  ++ ++    ++ + +P 
Sbjct: 252 VYLRDVAKVVDTVEERAQETYNNGVQGAMIVVQKQSGANSVEISKKVQQALPRLQKNLPS 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                  +   +     I      V+ + + ++I +++   +W   L    T+ L +  +
Sbjct: 312 DVKLGVIVDTSENILNTIDSLTETVMYALLFVVIVVFLFLGRWRATLIICITIPLSLIAS 371

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             + A+ G   N+ +++++   IG  V+D +VV + +             +       NE
Sbjct: 372 FIYLAISGNTINIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSDPKQAAVHGTNE 428

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V +++       P+ +     G +       M   + ++  +++ +   +   + 
Sbjct: 429 VAISVVASTLTMIAVFFPLTMVSGMSGVLFKQLGWMMCAIMFISTVAALSLTPMLCSQLL 488

Query: 825 DWRAKNAR 832
             + K ++
Sbjct: 489 RLQRKQSK 496



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 77/235 (32%), Gaps = 8/235 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              ++ ++            ++  +V +      +     V           +P       
Sbjct: 792  IKDIGTVVERFAPPTIERKDRERIVTVSAVISGAPLGNVVAAGNAIIEKMDIPSDVTIQV 851

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                          G +GV+I  I + I +  +F+   +    I ++   ++  L    +
Sbjct: 852  SGSFEDQQDSFRDLGTLGVLI-IILVFIVMAAQFESLTYPFILILSVPFAMSGVLMALFI 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++ ++   + LIG  V + +V+ D     +       S  + +  +    L   +
Sbjct: 911  TNTTLSVMSLLGSIMLIGIVVKNGIVLID---YTILCRERGQSVLNAVVTAGKSRLRPVL 967

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             T+M   + ++PMA+    G  +    AI +  G+ V+   ++     +      
Sbjct: 968  MTTMTTILGMIPMAISTGQGSEMWSPMAIAVIGGLAVSTILTLIYVPTMYCIFGG 1022


>gi|296533011|ref|ZP_06895661.1| hydrophobe/amphiphile efflux-1 family protein [Roseomonas
           cervicalis ATCC 49957]
 gi|296266674|gb|EFH12649.1| hydrophobe/amphiphile efflux-1 family protein [Roseomonas
           cervicalis ATCC 49957]
          Length = 1058

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 75/679 (11%), Positives = 181/679 (26%), Gaps = 40/679 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++   G L      L +  + +FP  +P                      
Sbjct: 9   RPRLAIVIAIVMTIAGALS-----LTRIPVSQFPDIVPPQVQ---------VSATYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +     + +      +     +  + +SF      +     V   +Q 
Sbjct: 55  AEVVEAAVAQPLEAQIVGVDQSIYMKSNSGSDGSYSLVVSFELGTNPDINTVNVNNRVQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS--HAIEQSMEIIRQRIDQIGISES 179
             + +  + +   +         + +     D        +  +       +D++  +  
Sbjct: 115 AMALMPSEVQAQGIRVEKRSSSILQVLFVYADDPARGYDPLYLTNYATLNILDELARTRG 174

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                   +    +    D  RL  L  T A ++      N        G   +      
Sbjct: 175 VGSATLFSQQNYAMRIWFDTQRLVSLGLTPADVAAAIRAQNVQAATGRLGAEPVPSDQRT 234

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q  V+ +  +S                +    +                 +         
Sbjct: 235 QLNVQTQGRLS-------------SPDQFGNIVLRANADGSVLRVRDVARVEIGARNQDS 281

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +   T          +RA                    + 
Sbjct: 282 RTRLNGQDGVGIGIYLSPGANAVQTAAAIEATLNRVRARMPEGMTVRPVFDTTIFVNDTI 341

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      LV +V+F+ +   +   +   ++ ++++ T A+L ++G +    S+  
Sbjct: 342 HEVIKTLIEAFVLVAVVVFLFLGNIRATFIPIVAVPVSLVTTFAVLLIMGYSANTVSLLA 401

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           +VL IG+ VD  I+V E +     +    +   +     ++    I    +  L   V +
Sbjct: 402 MVLAIGIVVDDAIVVVENVERVMEEEPELTPAQATKKAMAQITGPIVAITLVLLSVFVPI 461

Query: 478 FFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F  G +    R FA+T+  +++IS   A+++  A+    +R+   K   +  + R    
Sbjct: 462 GFIPGLSGELFRQFAVTISTAMVISAINALTLSPALCAVFLRHGGPKRGIMGWVMRRIDN 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-----KGGIQLGVLANRPV 589
                   +R       +S+L         FT        F     +G   +        
Sbjct: 522 VRDGYAAVVRRLLRLAIVSVLLVGAFGFGAFTLATRIPSGFLPSEDQGAFIIAFQLPDGA 581

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +S     +  ++               +       G +     +   +K       P  
Sbjct: 582 SVSRTSEVVGQMEAQLKQMPQVRDAIAIIGFSLLDGGAASNAATMFVQLKPFSERTGPGD 641

Query: 650 TIQNTEIVGPKISRELIRK 668
            +          S+++   
Sbjct: 642 NVNALIGRIFMQSQQIREA 660



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 96/283 (33%), Gaps = 8/283 (2%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                +      +  +L         D     ++ +  +R   +     ++ S +      
Sbjct: 755  SFINNFNLYGRTWQVLIQGESEDRRDTSALWKIEIRNSRGAMV--PLRSIASERTVVGPQ 812

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                      + +   P   V+    +E + +     +P            +  R   + 
Sbjct: 813  FITRYNNYRSITVSGSPRPGVSSGAAMEAMAQLSRNTLPAGYTFEWTGTSFQEQRASGQT 872

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            G +  +    A L  + +   W   +  + ++ + +   +G   L G+  +L A   ++ 
Sbjct: 873  GTILALAVLFAFLFLVALYESWVIPIPVLLSVTVGVLGAIGAMFLAGMSLDLYAQIGLIV 932

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LI  +  + +++ +  ++  +      S  D   +         + TS+A  + ++P+  
Sbjct: 933  LIALAAKNGILIVEFAKEQREA---GRSIVDAAAEGAKLRFRAVMMTSIAFILGLVPLVW 989

Query: 789  WGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              G+ +    + A P+  G++ A++  IF+   + +     R 
Sbjct: 990  ASGASMLARRAVATPVFAGMIAASTIGIFMIPMLYVVFQKMRE 1032



 Score = 43.5 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 60/149 (40%), Gaps = 11/149 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRK 746
                  I  + + +  T     + G   N  ++ A++  IG  V+D +VV    +R+ +
Sbjct: 366 IRATFIPIVAVPVSLVTTFAVLLIMGYSANTVSLLAMVLAIGIVVDDAIVVVENVERVME 425

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                   ++      K++ +  G  V  ++      +P+       G +   FA+ ++ 
Sbjct: 426 E----EPELTPAQATKKAMAQITGPIVAITLVLLSVFVPIGFIPGLSGELFRQFAVTIST 481

Query: 804 GIVVAASSSIFIAAPI-LLFIYDWRAKNA 831
            +V++A +++ ++  +  +F+     K  
Sbjct: 482 AMVISAINALTLSPALCAVFLRHGGPKRG 510


>gi|166710434|ref|ZP_02241641.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 1082

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/564 (10%), Positives = 157/564 (27%), Gaps = 40/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +  +G+L        Q  +   P     + +                 
Sbjct: 9   RRPIATSLLMAGVLLLGIL-----GYRQLPVSALPEIDAPSLV---------VTTQYPGT 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R     +  V   ++ 
Sbjct: 55  NATTMASLVTTPLERQFGQISGLKMMTSDSSAGLSTIILQFSMERDINIASQDVQAAIRQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 115 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDSLPLREVNRYADAILAQRLSQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  E                               R        N+   +       
Sbjct: 232 QLTDAAE--------------------YRQTIISYKDGRPVRLADVANVVDGVENDQLAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   L++         V          S   
Sbjct: 272 WADNTPAVLLEIRRQPSANIVQTVEQIRSILPQLQSVLPADVHLEVLSDRTETIRASVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T A+++  G +L   S+  +V
Sbjct: 332 VKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFAVMAFAGMSLDNLSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAQQIGFTVLSLTVSLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ SM  ++++   M  ++++   +   +             +
Sbjct: 452 GVTGRLFHEFAWVLSIAVVTSMLVSLTLTPMMCAYLLKPDALPEGEDAHERATAAGKRNL 511

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
             + +      +   +     ++ 
Sbjct: 512 WTRTVGTYERSLDWVLAHQPLTLA 535



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 91/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++ +      +      +   +        +    V L+ +   S 
Sbjct: 230 NDQLTDAAEYRQTIISYKDGRPVRLADVANVVDGVENDQLAAWADNTPAVLLEIRRQPSA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I+ +  +I++
Sbjct: 290 NIVQTVEQIRSILPQLQSVLPADVHLEVLSDRTETIRASVHEVKFTLVLTIALVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   +     + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATIIPSVAVPLSLAGTFAVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S  +  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGPEAAEIGAQQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V +   S+ +  
Sbjct: 466 SIAVVTSMLVSLTLTP 481



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 89/234 (38%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L   ++ +        ++   V + +      + ++ +  ++K   E+   + +    
Sbjct: 823  AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKARQELKIPTQVHAQF 882

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +             I  ++ S + + I + + ++ +   L  I+TL       L    + 
Sbjct: 883  VGKAAEFTGSQTDIIWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMC 942

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D     +       +  D I ++        + 
Sbjct: 943  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGANAHDAIRRACLLRFRPIMM 999

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA +  LP+A+    G  +     I +  G++++   +++    I L++  
Sbjct: 1000 TTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1053


>gi|293410438|ref|ZP_06654014.1| multidrug efflux system subunit MdtB [Escherichia coli B354]
 gi|291470906|gb|EFF13390.1| multidrug efflux system subunit MdtB [Escherichia coli B354]
          Length = 1040

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 58/545 (10%), Positives = 145/545 (26%), Gaps = 38/545 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR 544
                
Sbjct: 524 AYGRG 528



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|229495992|ref|ZP_04389716.1| AcrB/AcrD/AcrF family protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317084|gb|EEN82993.1| AcrB/AcrD/AcrF family protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 1042

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/524 (12%), Positives = 168/524 (32%), Gaps = 40/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++++  +  +G+       L +  +D +P     N I L               
Sbjct: 9   KKPITTILVFVALAILGIFS-----LQKLPIDLYPKIETNNIIVL---------TSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    + + + +  +       R+  + IT+ F +    E+  + +   L  
Sbjct: 55  GPQDVEANVTEPIENVLNGIANQKHITSESRENVSMITVEFNEGTDMESATNDIRDKLGL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++  L       +L      +I + +      +      +    +  + ++ +G  +   
Sbjct: 115 LSETLPDGAHDPMLFKFGVDDIPVQILVATARESTPGLDKI---LEDKVLNVLGRIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  I  Q+    DPS L     T  ++S      N++       +    +S   Q 
Sbjct: 172 SVSSSGTIKRQIQVYCDPSALEAYGLTIQQISAIIRAENSNVPAGQISIGNATNSIRVQG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  ++  I +                         +  +      +   +A  +   
Sbjct: 232 EFAEPRDLENIVVLSRM--------------------GQNVYLRDVARVEDTVAEQMQEA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        I + ++  +              ++                 + + + S 
Sbjct: 272 YLNGERSAAIIVNKQSGANSVEISRKVAEALPKIQETLPSDVEIFSVVNTSRSIVNTISS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   +V++V+F+ +   +  ++   +I ++++ +   L L G TL + S++ + 
Sbjct: 332 LGETILITFAVVMLVVFLFLGRWRATIIIILTIPISLVGSFIYLMLTGNTLNIISMSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E I     +      +     +    ++F S +T L   + L   G
Sbjct: 392 IAIGMVVDDAIVVLENITTHIERGSYPKQAAVHATNEVAISVFASTLTMLAVFLPLTMVG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   R     + + +++S   A+ +   +    +R +    
Sbjct: 452 GVTGIMFRQLGWIVSIIMIVSTICAVLLTPTLCAHWLRRRDTSK 495



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 81/239 (33%), Gaps = 6/239 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R      +    ++ N +     +V  Q          +V E + K    +     I
Sbjct: 256 DVARVEDTVAEQMQEAYLNGERSAAIIVNKQSGANSVEISRKVAEALPKIQETLPSDVEI 315

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            +       I   +   G   +I  A+ ML+      +W   +  I T+ + +  +  + 
Sbjct: 316 FSVVNTSRSIVNTISSLGETILITFAVVMLVVFLFLGRWRATIIIILTIPISLVGSFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   N+ +++++   IG  V+D +VV + +             +     + NE    
Sbjct: 376 MLTGNTLNIISMSSLSIAIGMVVDDAIVVLENI---TTHIERGSYPKQAAVHATNEVAIS 432

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              +++      LP+ + GG            ++  ++V+   ++ +   +       R
Sbjct: 433 VFASTLTMLAVFLPLTMVGGVTGIMFRQLGWIVSIIMIVSTICAVLLTPTLCAHWLRRR 491



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 87/240 (36%), Gaps = 7/240 (2%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +L + +           ++  ++ L       VA + +++   + +  I     I     
Sbjct: 793  DLGTFREYYTPPTIKRKDRERVITLSTVAASGVALSELVKDANEVMNSIDLPQGITYKLA 852

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               +  +E      V +++  I + I +  +F+ +      + ++    T  +    L G
Sbjct: 853  GSYEQQQESFTDLTVLLVLILILVYIVMAAQFESFLDPFVIMFSVPFAFTGVILGLVLTG 912

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +  +L A    + L+G  V + +V+ D  R          S    I  +    L   + T
Sbjct: 913  VSLSLIAFIGAIMLVGIVVKNGIVLIDYTR---LGRERGHSVCRSILIAGRSRLRPVLMT 969

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++   + ++PMA+    G  +     + +AFG+ ++   ++ +   I         K  R
Sbjct: 970  TLTTVLGMVPMAIGIGEGSEMWQPMGVTVAFGLTISTFVTLVLIPTIYASFTGREIKRDR 1029


>gi|302337422|ref|YP_003802628.1| acriflavin resistance protein [Spirochaeta smaragdinae DSM 11293]
 gi|301634607|gb|ADK80034.1| acriflavin resistance protein [Spirochaeta smaragdinae DSM 11293]
          Length = 1047

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/657 (11%), Positives = 204/657 (31%), Gaps = 46/657 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++++ +++  + L       +P   ++ FPS      +                 
Sbjct: 9   RRPVTILVVTALLVGLSLF-----MVPDLAVEMFPSTDFPVIM---------VRTTYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S +        +  +  + I L F  S   ++  + +   L+ 
Sbjct: 55  SPEEVEDSITSVLEKQLSNVSGIESITSTSSEGSSLIRLEFDYSTDLDDATNDIRDSLER 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D     ++      + I+    + ++      + + + I     ++   +   
Sbjct: 115 VTSALPDDAGSPQILKFDSSSMPIMRLMVSGEETSDVLTQLAEDTI---QPRLERIKGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++  +   +R+     + + +       +    G  F    +  +     
Sbjct: 172 SADVRGGETKEVKVDLSLNRMEAYGISFSTVESALEAQDVLLSGGDFEKGGMSYNLRINE 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +I                     + S     +         ++           
Sbjct: 232 RFGSLDDI----------CRTVVASIDTNNSSGSVNRSNVVRLEDIADVYLGEEDSTTRV 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +   +   +              +           +            + 
Sbjct: 282 YVNGSPSVSVVIRNETDTNTVQIANAVRKALPEINKTLPSGVKVEILYDTTTMISTLLNQ 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +    A L +++LF+ +   K  L+   SI +++++TL  +     TL + S+ G++
Sbjct: 342 VYISALQGAILAMLILFVFLRNIKSTLIVGISIPISLLITLGAMFFFDLTLNMISLTGLI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LG+G+ VDS+I++ E I +   +   +  +  +G     + I  S +T L   + +  + 
Sbjct: 402 LGLGMIVDSSIVILENIYKYRERGAKLHAAAILGSREMVTAIVASTLTTLCVFIPMIIWK 461

Query: 482 ------GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-------------S 522
                 G   +    T+ +S+L S+  A+ +V A+    ++    K             +
Sbjct: 462 DDLEMLGQMFQDMIFTIVISLLSSLAVALMVVPALSSTYLKVYSRKQKPLKNPVLRKLDN 521

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           I     + F           +R R   + + I+  + S+  L T GL +  +     ++ 
Sbjct: 522 ISERGFTAFENGYASALRFALRNRALVLTLVIVLFLLSLAQLSTMGLQFQPNSDSDDEVT 581

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           +    PV  ++  +    +++     +   G +N ++ +      S         + 
Sbjct: 582 IDLTMPVGTALDSTEAVLMEMRKTVEKEIKGYENIIITVGSGGFTSSNTYEGSIEIM 638



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 83/229 (36%), Gaps = 8/229 (3%)

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                 + + EK  +        D+ A      + +   T  V    +  +     +    
Sbjct: 811  GPEDIDREDEKRVVHVTSDITSDTTATEVNAMLQEYLSTSFVVPDGVTLSFSGEAEDISR 870

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAV 723
            +    ++ ++I+ I +   +   F+          ++ + +   +  + L G   +L ++
Sbjct: 871  MGGPLVIVLVIAIIMVFAVMASLFESLVDPFIIFFSIPMLLIGVVLVYTLLGQPLSLFSI 930

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ L+G  VN+ +V+ D       L    +   + +       L   + TS+   + +
Sbjct: 931  VGMVVLVGIVVNNGIVLVD---YTNLLRHKGVPLMEAVQTGARSRLRPVLMTSLTTILGM 987

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +PM  +   G   I +    +  G+V +   ++ +  P++  + +   K
Sbjct: 988  VPMGFFGAEGTESIQAIGQTIVGGLVASTFLTLLV-TPVVYSLINRDRK 1035



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 83/261 (31%), Gaps = 13/261 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V  +  V L  +       +               +V       ++V     +     +
Sbjct: 255 SVNRSNVVRLEDIADVYLGEEDSTTRVYVNGSPSVSVVIRNETDTNTVQIANAVRKALPE 314

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRK-GIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           I + +P             +   L+ +  I  +  + +AMLI           L    ++
Sbjct: 315 INKTLPSGVKVEILYDTTTMISTLLNQVYISALQGAILAMLILFVFLRNIKSTLIVGISI 374

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  TLG    F +  N+ ++  ++  +G  V+  +V+ + +    K           
Sbjct: 375 PISLLITLGAMFFFDLTLNMISLTGLILGLGMIVDSSIVILENI---YKYRERGAKLHAA 431

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSIF 814
                 E +   V +++      +PM +W       G +       +   ++ + + ++ 
Sbjct: 432 AILGSREMVTAIVASTLTTLCVFIPMIIWKDDLEMLGQMFQDMIFTIVISLLSSLAVALM 491

Query: 815 IAAPI---LLFIYDWRAKNAR 832
           +   +    L +Y  + K  +
Sbjct: 492 VVPALSSTYLKVYSRKQKPLK 512


>gi|255325092|ref|ZP_05366198.1| preprotein translocase subunit SecF [Corynebacterium
           tuberculostearicum SK141]
 gi|311739553|ref|ZP_07713388.1| protein-export membrane protein SecF [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255297657|gb|EET76968.1| preprotein translocase subunit SecF [Corynebacterium
           tuberculostearicum SK141]
 gi|311305369|gb|EFQ81437.1| protein-export membrane protein SecF [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 386

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 127/320 (39%), Gaps = 11/320 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L  D     F+       GI+    + ++  +   G +  IDF+GG  L +
Sbjct: 6   KHKISRMDRLYEDERGYDFIGRTKLWYGITAALIVAAVAAILIRGFSLSIDFEGGTTLSM 65

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A    +  V +   +S  +            +  + +  +             +     
Sbjct: 66  PAGDLKEDEVSQVFEDSTGVEPEQVHIVGAGDSETLEIVSERLSQEDVNAARAAIYDNFQ 125

Query: 644 EIVPL----STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                         +  V       + ++ ++ +++  +A  +Y+ IR +   A  AI  
Sbjct: 126 PKDENGKATPDAIGSSTVSESWGSSITQRMLIAMLVFLVAATVYVAIRLQKNMAFAAIIA 185

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISF 757
           LI D     G +ALFG E +   +  +LT++ +S+ D V+V+D++ +N +        +F
Sbjct: 186 LIADGVIIAGIYALFGFEVSPAVIIGLLTVLTFSMYDSVIVFDKINENTEGLEGQRKKTF 245

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSS 812
            +L + +IN+T+ RS+ TS+ + + ++ + V      G   +   A+    G+V    SS
Sbjct: 246 AELTNLAINQTVMRSISTSVISALPIIALFVVAVWLMGIGTLRDLALIQLIGVVEGIFSS 305

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           IF A P+++   +   K  R
Sbjct: 306 IFFATPLVVTFANMSKKIKR 325


>gi|295699498|ref|YP_003607391.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1002]
 gi|295438711|gb|ADG17880.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. CCGE1002]
          Length = 1065

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 59/521 (11%), Positives = 145/521 (27%), Gaps = 41/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G +           ++++P   P               L +    
Sbjct: 8   RPVFAWVIALFIVLFGAIALA-----LLPVEQYPDVAPP-------------SLSITAVY 49

Query: 63  DDFVNGFLQMYSDEL-RSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L+     +    +             R     +IT+        +    +V  
Sbjct: 50  SGADASTLERTVTSIVEDEMNGIDHFLYMSSVSRSNGTMQITVVLKPGTDLDVARSQVQD 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V  +L ++ ++  +  T      ++L         + A           ++++   
Sbjct: 110 RLSRVEPRLPLEVRQVGVRVTKASSGFLMLLALQATDSGTSATAMGNFASNNIVNELRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    DP +L     + +++       N+   G   G + +    
Sbjct: 170 DGVGDVQLFGS-SYAMRIWIDPRKLAGFGLSASEVLQAIQEQNSQTAGGGLGDQPIAPGS 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +   +                +    I                 +       
Sbjct: 229 EFTAQIVTQSRFT-------------TPEQFREIIVRANPDGSTVRVGDVARVELGNDSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +             +  +              L++         V          
Sbjct: 276 GNRLTVNGKASAGIAIQLASGANALAVANAVRQRMRELQSIFPRGVTWTVPFDTTPFITT 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  ++    + + +I T A L L G ++ + S+
Sbjct: 336 SVQGVIRTMIEALLLVTVVVFLFLQDWRATVIPTIVVPIALIGTCAGLYLFGLSINILSL 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+V+ IG+  D  I+V E +      +      +      +       S +  +   + 
Sbjct: 396 FGMVVAIGILNDDAIVVVENVARIMREEGLGAPRATVKAIGQISGAAIASTLVLVAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + FF G      R F++T+ +SIL+S   A+++  A+   +
Sbjct: 456 MAFFPGSTGGIYRQFSVTLAVSILLSTVLALTLGAALCAAM 496



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 59/134 (44%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +     + + +  T     LFG+  N+ ++  ++  IG   +D +VV + + + M
Sbjct: 361 DWRATVIPTIVVPIALIGTCAGLYLFGLSINILSLFGMVVAIGILNDDAIVVVENVARIM 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +             K+I +  G ++ +++      +PMA +    G +   F++ +A  I
Sbjct: 421 REEGLGAP--RATVKAIGQISGAAIASTLVLVAVFIPMAFFPGSTGGIYRQFSVTLAVSI 478

Query: 806 VVAASSSIFIAAPI 819
           +++   ++ + A +
Sbjct: 479 LLSTVLALTLGAAL 492



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 53/148 (35%), Gaps = 8/148 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MRKN 747
             W   +  +  +   +   +    L G+  ++     ++T+IG +  + +++ +  +++ 
Sbjct: 898  SWAIPVAVLLIIPFGVIGAVLLTLLRGLSADVYFNIGLVTIIGLAAKNAILIVEFAIKEE 957

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
             +                 + L   + TS+   + +LP+ +    G +   +    +   
Sbjct: 958  AE----GKDALAAAKNGAQQRLRPILMTSITFVLGMLPLVLATGAGAASRRAVGTGVMGS 1013

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++ A    IF      +    W ++  R
Sbjct: 1014 MLTATMFGIFFTPLFYVAARRWLSRKKR 1041


>gi|70728410|ref|YP_258159.1| multidrug efflux RND transporter [Pseudomonas fluorescens Pf-5]
 gi|68342709|gb|AAY90315.1| multidrug efflux RND transporter [Pseudomonas fluorescens Pf-5]
          Length = 1020

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/603 (13%), Positives = 185/603 (30%), Gaps = 44/603 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL            + ++P  +  + IS+  D  G         
Sbjct: 9   RRPVLALVVSLLILLAGL-----KAYSNLPVRQYP-LLESSVISVTTDYPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    ++  + ++       S  Q ++ ITL  A ++       +V   +  
Sbjct: 55  PAELMQGFVTQPINQSLASVEGVDYVSSSSVQGRSLITLRMALNQDSSKTLSEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L       ++  +     ++         +   A   S  + R         E   
Sbjct: 115 VKYRLPEQAYDPVIERSAGDATAVAYVGFASRSLS--ASALSDYLSRVVQPLFSSIEGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +        + +    DP R+     + A++       N          +++  S     
Sbjct: 173 KVETFGGQRLAMRLWLDPQRMAGHGVSAAQVEQAIRANNFQAAPGQIKGQYVISSIQVNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                           D+     G           +    A      
Sbjct: 233 DLS--------------------NLDEFRDMVISNRGDHLLRLRDIARVELGSASYETSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++              + +    +     L   ++    P     +          S   
Sbjct: 273 LMDGKPAVHLGLYATPKGNPLLIVADIKRLLPEIQKTLPPGVEVALAFETAHFIQASIIE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V+ ++++ +   +  L+   SI L+++  LAL+ L G ++ L ++  +V
Sbjct: 333 VIETLIEAILIVVAIIYLCLGSARSVLIPVVSIPLSMVGALALMHLFGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I+V E I    ++ ++   +  +G     S +    IT     + +    
Sbjct: 393 LAIGLVVDDAIVVMENIHRHLKEGRTPLQAAFVGAREIASPVIAMTITLAAVYMPIGLMS 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLI 534
              G   + FA+T+  ++LIS   A+++   M   +     +  +M             +
Sbjct: 453 GLTGALFKEFALTLAGAVLISGVVALTLTPVMCATLLPAGQQEGRMSRWAEQFFHWLARL 512

Query: 535 PDCIAIQFMRARFWGVGISI-LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                ++ +R R   +  +  +                  + +G + L + + +  +L  
Sbjct: 513 YQHGLVRSLRWRGAVLAFAALVLLSLPWLYGHASKELAPNEDQGNLLLAIKSPQHANLDY 572

Query: 594 VRS 596
           V  
Sbjct: 573 VER 575



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 76/192 (39%), Gaps = 11/192 (5%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRF---- 688
           ++    K++   +  +     E+     +   I+  I+ VI + I A+LI + I +    
Sbjct: 294 LIVADIKRLLPEIQKTLPPGVEVALAFETAHFIQASIIEVIETLIEAILIVVAIIYLCLG 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  + ++ L +   L    LFG   NL  + A++  IG  V+D +VV + +    
Sbjct: 354 SARSVLIPVVSIPLSMVGALALMHLFGFSINLLTLLAMVLAIGLVVDDAIVVMENIH--- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      +          E     +  ++      +P+ +     G++   FA+ +A  +
Sbjct: 411 RHLKEGRTPLQAAFVGAREIASPVIAMTITLAAVYMPIGLMSGLTGALFKEFALTLAGAV 470

Query: 806 VVAASSSIFIAA 817
           +++   ++ +  
Sbjct: 471 LISGVVALTLTP 482



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 83/256 (32%), Gaps = 10/256 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +   V LS V S  +S+Q   +   N      F            A   + +  + 
Sbjct: 765  VETDSGTQVPLSTVVSLHDSIQPNKLKQFNQQNAATFQGIPAPGVSLGQAVAFLQQQSQA 824

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                        + + +    +  L     + VI   +A              L  + T+
Sbjct: 825  LPASFSHDWQADSRQFIHEGNALLLTFLFALIVIYMVLA-----AQYESLSDPLIILITV 879

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L I   L   AL     N+     ++TLIG      +++ +   +         +    
Sbjct: 880  PLSICGALIPLALGLATINIYTQIGLVTLIGLISKHGILMVEFANELRAAL--GCTAAQA 937

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++    L   + T+ A  + ++P+      G S      + +  G++V    ++F+  
Sbjct: 938  IIRAARIRLRPILMTTAAMVVGLVPLLFSSGAGASSRFGLGLVIVIGMLVGTLFTLFVLP 997

Query: 818  PILLFIYDWRAKNARI 833
             I   +    ++++ +
Sbjct: 998  SIYSLMARAHSRSSEL 1013


>gi|225076296|ref|ZP_03719495.1| hypothetical protein NEIFLAOT_01337 [Neisseria flavescens
           NRL30031/H210]
 gi|224952420|gb|EEG33629.1| hypothetical protein NEIFLAOT_01337 [Neisseria flavescens
           NRL30031/H210]
          Length = 1070

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 68/593 (11%), Positives = 162/593 (27%), Gaps = 48/593 (8%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF----LKK 83
            +  + ++PS                  + L           ++     +       ++ 
Sbjct: 28  QKLPISQYPSVAAPT-------------ITLTATYPGASAQVMEDSVLAVIERNMYGVEG 74

Query: 84  EGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                 S        ++L+F     ++     V   L  V S L    ++  ++ +  + 
Sbjct: 75  LDYMTTSANSSGSGSVSLTFTPETNEDLAQVDVQNKLSEVLSTLPSTVQQYGVIVSKARS 134

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
             + +   + +       E +    R  + ++   +   Q          +    DP +L
Sbjct: 135 NFLQIVMLSSE--RQSIEEMNDYAQRNIVPELQRIDGVGQVRLFGAQR-AMRIWVDPKKL 191

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           +    + A ++      N        G             V  + ++S            
Sbjct: 192 QNYNLSFATVTNALATQNIQISAGSIGSLPAAAGQTISATVTAQGQLS------------ 239

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    I          +      +   +        L                +  
Sbjct: 240 -TAEEFGNIILVSNTDGSNVYLKDVAKVSLGMQDYSSSTRLNGVNTTGMAVMLSNSGNAL 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T        A+L+          V          S      T      LV +V+++ + 
Sbjct: 299 ATATAVKEKMAVLQKYFPDGMSWKVPYDTSKFVEISIEKVIHTLLEAIVLVFLVMYLFLQ 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             ++ L+    + ++++   A +S +G ++ + ++  +VL IG+ VD  I+V E +    
Sbjct: 359 NIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENVERIM 418

Query: 443 -RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILI 498
             +  S   +      +    +       +   V L  F    G   + FA+TM  SI  
Sbjct: 419 ASEGLSPKAATKKAMGQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMAASIAF 478

Query: 499 SMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
           S F A+++  A+   +           +       +    +        +A    +    
Sbjct: 479 SAFLALTLTPALCATMLKPIQKGHHEEKKGFFGWFNKKFDNWTHGYEGWVAKVLRKTLRM 538

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            V    L  +     +         + +G + L V            + L  +
Sbjct: 539 MVVYIGLTVVGVFLFMRLPTSFLPTEDQGNLMLSVQLPAGATKERTDATLAQI 591



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 94/249 (37%), Gaps = 6/249 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   I +       V L  V      +Q    S +        +  +    G+++A    
Sbjct: 244 FGNIILVSNTDGSNVYLKDVAKVSLGMQDYSSSTRLNGVNTTGMAVMLSNSGNALATATA 303

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           ++     + +  P            K     I K I  ++ + + + + +++  +   + 
Sbjct: 304 VKEKMAVLQKYFPDGMSWKVPYDTSKFVEISIEKVIHTLLEAIVLVFLVMYLFLQNIRYT 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + +     F +  G+  N+  + A++ +IG  V+D +VV + +     + + 
Sbjct: 364 LIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMASE 421

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +S +    K++ +  G  +  +       +P+A++ G+       FA+ MA  I  +A 
Sbjct: 422 GLSPKAATKKAMGQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMAASIAFSAF 481

Query: 811 SSIFIAAPI 819
            ++ +   +
Sbjct: 482 LALTLTPAL 490



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 689  KWYFALGAITTLILDITKTLGFF------ALFG----IEFNLTAVAAVLTLIGYSVNDKV 738
                A+  +  L L I   LG        AL G       ++      +T++G S  + +
Sbjct: 893  SIPLAVILVIPLGL-IGAALGVTGRNMFEALLGSIPAYANDIYFQVGFVTVMGLSAKNAI 951

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---G 795
            ++ +  +    L     S  +    + +      + TS A  + V+P+ V  G+      
Sbjct: 952  LIIEFAKD---LQAQGKSALEAALAAAHLRFRPIIMTSFAFILGVVPLYVASGASSASQR 1008

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    + +G+++    S+F+     + +  +  + A
Sbjct: 1009 AIGTTVFWGMLIGTILSVFLVPLFYVVVRKFFKETA 1044


>gi|241766399|ref|ZP_04764278.1| acriflavin resistance protein [Acidovorax delafieldii 2AN]
 gi|241363433|gb|EER58918.1| acriflavin resistance protein [Acidovorax delafieldii 2AN]
          Length = 913

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 72/557 (12%), Positives = 157/557 (28%), Gaps = 38/557 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +  +G +      +       +P+                    L    
Sbjct: 10  RPIATMLLTLGLALVGAVSYFLLPVAPLPQVDYPTIS--------------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +                ITL F  +R  ++ A  V   +   
Sbjct: 56  PDTMAATVATPLERSLGAIAGVNEITSRSILGSTSITLQFDLNRNVDSAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L      N          S ++    +        +           ++   E   Q
Sbjct: 116 RTLLPTGMPSNPTYRKVNPADSPIMI-LALTSGSLTRGQMYDAASTVLAQKLSQVEGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   L  +    DP RL     +  ++       N ++                   
Sbjct: 175 ATVSGGALPAVRVSLDPVRLAANGVSLEQVRSAISTTNANRPLGAVERE----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                     H     AN   +       +                ++   +  V +  V
Sbjct: 224 ---------DHYWQVAANDQARVAADYAPLVLRWQNGNAIRLADVADVTDSVQDVRNYGV 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L+A         +          S    
Sbjct: 275 ANGKPAILLQVYKQPGANIIEAVDRVRALLPQLQASIPAAIDVQIVSDRTPTLRASVREV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V+F+ +  G+  L+   ++ +++  T  ++ L+G TL   S+  + +
Sbjct: 335 ERALVIAVALVILVVFLFLRNGRATLIPAVAVPVSLAGTFGVMYLVGYTLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     + ++   +   G      T+   +++ +   V + F G 
Sbjct: 395 ATGFVVDDAIVVLENIMRHMERGKTALQAALDGAREIGFTVVSMSLSLIAVFVPILFMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAI M  +IL+S+  +++    M   ++R  +      N             
Sbjct: 455 IVGRFFREFAIVMSAAILVSLLVSLTTTPMMCAALLRPHRASGAAPNRSPWARFSRWVDG 514

Query: 540 IQFMRARFWGVGISILF 556
           +Q    R + + ++   
Sbjct: 515 LQARGLRGYRLSLAWCL 531



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 85/238 (35%), Gaps = 8/238 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L+ V    +S+Q               L   +    + +     +  +  ++   +
Sbjct: 252 NAIRLADVADVTDSVQDVRNYGVANGKPAILLQVYKQPGANIIEAVDRVRALLPQLQASI 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDIT 705
           P +             R  +R+    ++I+   +++ +++  +     L     + + + 
Sbjct: 312 PAAIDVQIVSDRTPTLRASVREVERALVIAVALVILVVFLFLRNGRATLIPAVAVPVSLA 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G   L G   +  ++ A+    G+ V+D +VV + +   M+      +         
Sbjct: 372 GTFGVMYLVGYTLDNLSLMALTVATGFVVDDAIVVLENI---MRHMERGKTALQAALDGA 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
            E     V  S++     +P+   GG V      FAI M+  I+V+   S+    P++
Sbjct: 429 REIGFTVVSMSLSLIAVFVPILFMGGIVGRFFREFAIVMSAAILVSLLVSL-TTTPMM 485


>gi|60389881|sp|P69340|MDTB_SHIFL RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
          Length = 1039

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 168/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +        +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLNVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|159026971|emb|CAO86689.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1021

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/622 (10%), Positives = 176/622 (28%), Gaps = 40/622 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N    +++  ++  +G +  L   + +S     P+ +                +     
Sbjct: 11  KNPIPTILISLVMALMGYIAFLGLGIDRSPNIDIPAVI--------------ITVNQPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + L        ++ +  +  T++F      +   + V   +  
Sbjct: 57  GPEELETQVTKKVEDAVAALGNIDQITSTVNEGSSTTTVNFILGTNSDRATNDVRNAIAQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    ++        +++    +         E S  + RQ    +       
Sbjct: 117 IRQDLPQDTNDPIVQRLEFAGGAVMNYTISSP--KRSIAELSDLVDRQIGRALTGVPGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++  + DPSRL     T   ++      N +  G    +     +     
Sbjct: 175 RVDRVGGVDREVRVDLDPSRLIAYAITATAVNDQIRSFNINLPGGRSEIGGSEQTVRTLG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   ++    ++                                  +    +      
Sbjct: 235 SAETIEDLRNYQISLP--------------------NGDTVTLNNLGTVSDSSSDPRQMA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +           +              L+          +      +   S   
Sbjct: 275 LLDGQPVVGFSILRGTGSTLVTVETAVRQEIENLKKKLPEDIKFQLIFTRADSIRDSYES 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I   + +I + + +   +  ++   ++ L++  T  ++  L  TL   ++  + 
Sbjct: 335 LLSDLLIGCLMTVITVGLFLGNWRATIITGLALPLSIFPTFWVMQTLNYTLNGMTLLALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  + + E I +     +    +           +  S    +   + + F G
Sbjct: 395 LALGNLVDDAVCMVEDIDQHLAIGKKPLQAAFDASKEIGLAVLASAAAIIAVFLPVAFMG 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +S L S   A+++   +  +I++ KK+K+   N  S         
Sbjct: 455 GVPGQFFQPFGVTVAVSTLFSSLIAVTVTPMLSAYILQPKKLKT-GDNNPSSRPRFRPYK 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           ++     R   + +    +     L     +  G+   G   L  ++      + +   +
Sbjct: 514 SLLTWALRHRILTLLAALAFFIGSLQLVPLIPKGLFSSGDTGLSTISLELPPGATLNDTV 573

Query: 599 ESLQIGDISFQNFDGEKNFLVR 620
                 +   Q      N L  
Sbjct: 574 AVANQVNSLLQKNPAVANVLAI 595



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 71/173 (41%), Gaps = 7/173 (4%)

Query: 658  GPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
              +I R++  + +  + ++ I++  I + +   + + L  +T+L L I  TL    +   
Sbjct: 836  DARIMRDIFARFLGALSLAIISIYGILVLLYNNFLYPLAILTSLPLSIGGTLIALLITQK 895

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            E  L A+  ++ L+G    + +++ D     +            +  S    L   + TS
Sbjct: 896  ELGLYALIGIVLLMGLVTKNAILLVDFA---LSGLQEGKPQFKAVIDSGVSRLRPIIMTS 952

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++    +LP+A+     G +    AI +  G   +   ++ +   I  +I  +
Sbjct: 953  VSTIAGMLPIALALGADGEIRAPMAIAVIGGFTTSTLLTLVVVPVIFTYIDSF 1005



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 74/209 (35%), Gaps = 13/209 (6%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             A  + +E +KKK+ E +    I             L+   ++G +++ I + +++   
Sbjct: 298 ETAVRQEIENLKKKLPEDIKFQLIFTRADSIRDSYESLLSDLLIGCLMTVITVGLFLG-- 355

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +     L L I  T           N   + A+   +G  V+D V + + + ++
Sbjct: 356 -NWRATIITGLALPLSIFPTFWVMQTLNYTLNGMTLLALALALGNLVDDAVCMVEDIDQH 414

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           + +             +  E     + ++ A     LP+A  GG        F +     
Sbjct: 415 LAIGKK---PLQAAFDASKEIGLAVLASAAAIIAVFLPVAFMGGVPGQFFQPFGVT---- 467

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           + V+   S  IA  +   +  +  +  ++
Sbjct: 468 VAVSTLFSSLIAVTVTPMLSAYILQPKKL 496


>gi|108757162|ref|YP_631176.1| RND efflux transporter [Myxococcus xanthus DK 1622]
 gi|108461042|gb|ABF86227.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Myxococcus xanthus DK 1622]
          Length = 1046

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/523 (11%), Positives = 156/523 (29%), Gaps = 40/523 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   +   G+     N  P+  +D+FP                    VL   +
Sbjct: 8   RPVFTAMLMLAVVVFGI-----NAYPRIGVDQFPDVEFPVVT---------VTTVLPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +E  + L           +  ++I + F      +  +  V   +Q  
Sbjct: 54  PESMEKNVSDPLEEALNTLNGVEQLRSINLESVSQIVVRFTLDTKVDVASQDVRDRVQAT 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            SKL  + +  ++         I+    +    I      + ++       +        
Sbjct: 114 LSKLPTEIETPVVEKFDIGAAPIMTLSLSGALPIEEMTRVAEDV---VKPALQRQPGVGS 170

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP RLR      + +S      N    G                 
Sbjct: 171 IDVVGGREREIQIVVDPERLRGFGLAVSDVSQAVQAQNLDVPGGRTMDSGRERVVRLTSE 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   E+                     +I                ++            
Sbjct: 231 AKSVDEL--------------------RNIIIASPNGAPVRVRDVADVVDGPEEARSSAK 270

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   ++  +     E+       + +         +   N      S +  
Sbjct: 271 SGDRSAVALVVRKQSGSNTVQVAESIKESLGEVNSLLPEGVRTEMVTDNSRFIRSSIAAV 330

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   L ++++ + +      LVA  ++ ++V+ T A+++ LG T  + ++  + L
Sbjct: 331 QFDLVLGGFLAVLIVLVFLRNLNSTLVAAVALPVSVVGTFAVMAALGFTFNVVTMLALTL 390

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
            IGL +D  I+V E I     + ++   +   G S+    +F   +  +   + + F   
Sbjct: 391 SIGLLIDDAIVVIENIVRHLEEGKTPMQAALEGASQIALAVFAVTLAIVAVFIPVAFMDG 450

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             G     F +T+ +++LIS   ++++   +   ++ +    +
Sbjct: 451 TMGMFFYQFGVTVAVAVLISYAVSMTLTPMLSARMLSHHGNPT 493



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 74/210 (35%), Gaps = 6/210 (2%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +VR Q           + E + +  + +      +        I   +       
Sbjct: 275 SAVALVVRKQSGSNTVQVAESIKESLGEVNSLLPEGVRTEMVTDNSRFIRSSIAAVQFDL 334

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+   +A+LI +         L A   L + +  T    A  G  FN+  + A+   IG 
Sbjct: 335 VLGGFLAVLIVLVFLRNLNSTLVAAVALPVSVVGTFAVMAALGFTFNVVTMLALTLSIGL 394

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++D +VV + +   ++      +      +  ++        ++A     +P+A   G+
Sbjct: 395 LIDDAIVVIENI---VRHLEEGKTPMQAALEGASQIALAVFAVTLAIVAVFIPVAFMDGT 451

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +      F + +A  ++++ + S+ +   +
Sbjct: 452 MGMFFYQFGVTVAVAVLISYAVSMTLTPML 481



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 93/241 (38%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             N  ++   D   Q     +   + L        A +  +  +     + +P + I + E
Sbjct: 776  RNFATITPADGPVQIDRESQKRQITLLANLASGYALSDGINFLNAYAEKELPKTVIYDFE 835

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                ++ + +   G   +++  I + + +  +F+ +      + +L   +   +G   + 
Sbjct: 836  GNAKEMGKAVAAFG-SALLLGIILIYMILAAQFESFVHPFTIMMSLPFALIGAIGGLLVT 894

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ A+  V+ L+G  V + +++ D     ++L     +  + + ++    L   + 
Sbjct: 895  GQAMSMFALIGVIMLMGLVVKNGILLVDF---TLQLREEGKTATEALLQAAPVRLRPILM 951

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++A    ++P+AV    G       AI +  G+V +   ++ +   +   +     K  
Sbjct: 952  TTIAMIAGMIPVAVAKGDGAETRAPMAITIIGGLVTSTFLTLGVVPVVYSLMDQLTEKFK 1011

Query: 832  R 832
            R
Sbjct: 1012 R 1012


>gi|90579323|ref|ZP_01235133.1| putative multidrug resistance protein [Vibrio angustum S14]
 gi|90440156|gb|EAS65337.1| putative multidrug resistance protein [Vibrio angustum S14]
          Length = 1041

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 63/587 (10%), Positives = 162/587 (27%), Gaps = 42/587 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      +  
Sbjct: 9   KRPVVAIVLSLLLCVFGVVS-----FSKLAIREMPDVESPVVT---------VMTTYDGT 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +          R   ++I++ F+           V   +  
Sbjct: 55  SATVMESQVTTPIEDELSGISGIDNITSITRNGMSRISIEFSMDWDLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++          V    +  +      + +    R   D+  +     
Sbjct: 115 AQRRLPDDASDPIVSKDNGSGEPAVYINLSSSE--MDRTQLTDYAQRVLEDRFSLINGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     TT  +                          N  
Sbjct: 173 SVSLSGGLYKVMYLKLKPELMAGRGVTTKDIIDALRDE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   +V      +   TA      +                +     ++           
Sbjct: 214 LPGGEVRNDQTVMAVRTARLYRTANDFKYLTVRTTENGTPIYLKDVADVAIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V         +  +     +      A ++          V+         S S 
Sbjct: 274 KSNGVVNLSLGIVTMSDANPLEVAKDVRAEVARMQKFLPEGTSLTVDYDATVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLLVTGALVILVLYVFIGQARATLIPAVTVPVSLISAFITAYFFGFSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I    ++ +S   +   G       +  +    ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVVENIFHHMQRGESPLLAAYKGTREVGFAVIATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF----LI 534
           G        F++ + ++++ S   A+++   M   I++     +     ++R F     +
Sbjct: 454 GMVGRLFTEFSVLLAMAVIFSSLIALTLTPVMGSKILKANVKPTRFNLWVNRQFDKLENV 513

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                   ++ RF    + +     S  L+             G+  
Sbjct: 514 YRKGVTFAVKKRFIAPIVVLACIGASAALMKVIPAQLAPQEDRGVLF 560



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 79/244 (32%), Gaps = 10/244 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F       + L            V + V+ 
Sbjct: 243 LTVRTTENGTPIYLKDVADVAIGAENENSTFKSNGVVNLSLGIVTMSDANPLEVAKDVRA 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG--IVGVIISAIAMLIYIWIRF--KWYFALGA 696
           ++  +        +  V    +  + R    +   ++   A++I +   F  +    L  
Sbjct: 303 EVARMQKFLPEGTSLTVDYDATVFIERSISEVYSTLLVTGALVILVLYVFIGQARATLIP 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             T+ + +         FG   NL  + A++  IG  V+D +VV + +           S
Sbjct: 363 AVTVPVSLISAFITAYFFGFSINLLTLMALILAIGLVVDDAIVVVENI---FHHMQRGES 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
                 K   E     + T+    +  LP++   G V      F++ +A  ++ ++  ++
Sbjct: 420 PLLAAYKGTREVGFAVIATTAVLVMVFLPISFMEGMVGRLFTEFSVLLAMAVIFSSLIAL 479

Query: 814 FIAA 817
            +  
Sbjct: 480 TLTP 483



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + I   L    L G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMLTVPMGIFGGLAGLWLMGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    I F   I  +    L   + T+       +P+ +    G     S    + FG+
Sbjct: 931  QLRDKGIEFEQAIIDASVRRLRPILMTAFTTLFGAIPLIISTGAGAESRISVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A   ++F+   +   I        
Sbjct: 991  AFATLVTLFVIPAMYRLIAGKTKSPG 1016


>gi|154248273|ref|YP_001419231.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Xanthobacter
           autotrophicus Py2]
 gi|154162358|gb|ABS69574.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Xanthobacter autotrophicus Py2]
          Length = 1053

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 78/688 (11%), Positives = 185/688 (26%), Gaps = 47/688 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +    GLL  L        + ++P  +P               + +    
Sbjct: 9   RPRLAIVIAIVTTIAGLLSLL-----AIPVAQYPDIIPP-------------QVSVTTAY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       + + +     +         +    +T SF      +     +  
Sbjct: 51  PGASAEVVDSTIAQPIEAQVVGVDKLIYMKSVSGDDGSYTLTGSFELGTDPDINTVNMNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   SKL  D K+  +V   +    + +   +  +     +  S  +    +D++   
Sbjct: 111 RVQVAQSKLPEDVKRQGVVVKKKSSALLGVLAISSPKKTWDPLYISNYVTINILDELKSI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +       RL  L  TT  +       N        G R + D  
Sbjct: 171 PGVGDAALWGPQDYAVRAWVKTDRLTGLGLTTQDIVAAIRGQNIQAAVGRIGARPVSDDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  K  +S I              +    +                 +    A +
Sbjct: 231 QLQLNLRTKGRLSSIE-------------EFEKIVLRTNEDGSVLRLGDVARLELGAANL 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +   TI         L           V        + 
Sbjct: 278 DRETLFNGGPAAVLALYQSPGANAITTINAVRKRMDELSKAFPEDLAWKVTYDPTSFVVE 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +    + T      LV++V+++ +   +  L+   ++ +++I T  +L+ +G +    S+
Sbjct: 338 TIHEVQKTLIEAFILVVLVVYLFLGSFRATLIPTLAVPVSLIGTFIVLNAIGYSANSVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             IVL IG+ VD  I+V E +     ++   +   +     +   + I    +  L   V
Sbjct: 398 LAIVLAIGIVVDDAIVVVENVERVMEEHPEFTPAEATKRAMAEITAPIIAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G +    R FA+T+ +++ +S   A+++  A+   +++                
Sbjct: 458 PVAFIPGISGELFRQFAVTVAVAMFLSAINALTLSPALCAILLKPSHGPKKGPIGYVMRG 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI------DFKGGIQLGVLAN 586
           +     A     AR     +  L  +                     D +G   + V   
Sbjct: 518 IDKVRDAYGAAVARLVRFSLIGLVCVFVASGGIFALSKMTPTGFLPEDDQGAFFVVVQLP 577

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +      +   +         +   + +               ++  +K       
Sbjct: 578 GGASVGRTTEVIRKAEALLREEHTVEDFTSVIGLNFIDNYSQPNAAFIVVTLKPFEERHG 637

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
             +             R +    +V + 
Sbjct: 638 AENGAAAILARLGPKMRAISGGSVVPLG 665



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 77/219 (35%), Gaps = 6/219 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 V +Q  P + V+  + L  + +   + +P            +  R   + GI+  
Sbjct: 817  NNKRAVTVQGAPAEGVSSGQALAAMDEVAAKTLPQGFSGAWTDTSFQEKRAEGKTGIILA 876

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
                 A L  + +   W   +  + ++ + +        +  +  +L     ++ LIG +
Sbjct: 877  FAVLFAFLFLVALYESWSIPVPVLLSVTVGMLGAFAAIVVGRLTLDLYGQIGMIVLIGLA 936

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++                +         + TS+A  + + P+ V  G+ 
Sbjct: 937  AKNGILIVEFAKE---RREHGEDLLQAATEGSRLRFRPVMMTSLAFILGLYPLVVATGAA 993

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                 +   P+  G++ A+   IF+  P+ +     R K
Sbjct: 994  QMARQNVGTPVFGGMIAASFLGIFVIPPLYVLFQGIREK 1032



 Score = 44.7 bits (103), Expect = 0.069,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 58/150 (38%), Gaps = 10/150 (6%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
            +   L     + + +  T       G   N  ++ A++  IG  V+D +VV    +R+ 
Sbjct: 363 SFRATLIPTLAVPVSLIGTFIVLNAIGYSANSVSLLAIVLAIGIVVDDAIVVVENVERVM 422

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +    +    +  +   +++ E     +  ++      +P+A      G +   FA+ +A
Sbjct: 423 EEHPEF----TPAEATKRAMAEITAPIIAITLVLLSVFVPVAFIPGISGELFRQFAVTVA 478

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             + ++A +++ ++  +   +        +
Sbjct: 479 VAMFLSAINALTLSPALCAILLKPSHGPKK 508


>gi|170739843|ref|YP_001768498.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium sp. 4-46]
 gi|168194117|gb|ACA16064.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium sp. 4-46]
          Length = 1061

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 82/658 (12%), Positives = 176/658 (26%), Gaps = 39/658 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +    G L  L        + ++P  +P          +           
Sbjct: 9   RPRLALVIAIVTSIAGALALL-----AIPVAQYPDIVPP---------QVSVTTTYPGAA 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            D V   +    +     + K            +  +T SF      +  A  V   +Q 
Sbjct: 55  ADVVESTVAQPIESQVVGVDKMIYMKSVSGNDGSYTLTCSFELGTDPDINAVNVNNRVQI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +KL  D +K  +    +    + +      + I   +  S  +    +D+I  +    
Sbjct: 115 ALAKLPEDVRKQGVTVKKKSSALLGVLAVYSPKAIQDPLFISNYVTINLLDRIKSTPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +       +L  L  TT  +       N        G R + D    Q 
Sbjct: 175 DATLWGPQDYAMRAWVRSDQLTGLNLTTGDVINAIKAQNVQAPVGRIGARPISDEQQLQL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  ++                +    +                 I    A +    
Sbjct: 235 SIQTQGRLT-------------SPEQFRNVVLRTNPDGSLLRLGDVARIELGAASLDRET 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T++      A L           V          +   
Sbjct: 282 RLNGSPATVIAIYQSPGANAIATLKEVKARVAALAKAFPEGLEWKVTYDPTAFITETVHE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV+IV+F+ +   +  L+   ++ +++I T   L  +G +    S+  +V
Sbjct: 342 VQKTLVEAFVLVVIVVFLFLGSLRATLIPTVAVPVSLIGTFIALKAVGYSANSVSLLAMV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     ++   S   +     +   + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEHPDLSPREATKRAMAEITAPIIAITLVLLSVFVPVAF 461

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R FA+ + +S+ +S   A+++  A+   ++R        I       +   
Sbjct: 462 VPGISGELFRQFAVAVAVSMFLSAINALTLSPALCGVLLRPHHGPRRGIMGFVMRAIDAV 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI------DFKGGIQLGVLANRPVD 590
                   AR   + I  L    +                   D +G   + V       
Sbjct: 522 RDGYGAAVARIVRLSIIGLVLSLAAAWGTVELAKITPTGFLPEDDQGAFFVVVQLPEGAS 581

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           ++         +               +               ++  +K         
Sbjct: 582 VARTSDVAAKAEAILREEHAVADATTVVGLNFIDNYSQSNAAFLVVTLKPFEERKGAG 639



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 73/184 (39%), Gaps = 9/184 (4%)

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                   +E   +G   +I++   +  ++++      W   +  + ++ + I        
Sbjct: 856  EWTDTAFQEKRAEGKTAIILAFAVLFAFLFLVGLYESWTIPVPVLLSVTVGIVGAYAAMV 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              G+  +L A   ++ LIG +  + +++ +  ++        ++ R+   +         
Sbjct: 916  WGGLTLDLYAQIGMVVLIGLAAKNGILIVEFAKEQR---EKGVALREAATEGARLRFRPV 972

Query: 773  VYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + TS A  + +LP+ +  G+      +   P+  G+V A+   IF+  P+ +     R +
Sbjct: 973  MMTSFAFILGLLPLVIATGASQLARRNVGTPVFGGMVAASFLGIFVIPPLYVVFQGLRER 1032

Query: 830  NARI 833
              R+
Sbjct: 1033 AWRL 1036



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
                L     + + +  T       G   N  ++ A++  IG  V+D +VV    +R+ 
Sbjct: 363 SLRATLIPTVAVPVSLIGTFIALKAVGYSANSVSLLAMVLAIGIVVDDAIVVVENVERVM 422

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +        +S R+   +++ E     +  ++      +P+A      G +   FA+ +A
Sbjct: 423 EE----HPDLSPREATKRAMAEITAPIIAITLVLLSVFVPVAFVPGISGELFRQFAVAVA 478

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++A +++ ++  +
Sbjct: 479 VSMFLSAINALTLSPAL 495


>gi|332561467|ref|ZP_08415780.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rhodobacter
           sphaeroides WS8N]
 gi|332273969|gb|EGJ19287.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rhodobacter
           sphaeroides WS8N]
          Length = 1037

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 73/655 (11%), Positives = 190/655 (29%), Gaps = 39/655 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++  +G +        +  ++++P   P   I+                 
Sbjct: 8   RPVFAWVIAVLVMLMGAISLW-----RLPIEQYPQIAPTT-IN--------VSATYGGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++  + ++       S       + L+FAD    +    +V   LQ V
Sbjct: 54  AEVVANSVTSLIEDALTGIEGVIYMTSSSSAGSASVALTFADGVDPDIAQVQVQNALQRV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    ++N +        +++++    ++  S ++E    +  + +  +   +    
Sbjct: 114 TAQLPSIVQQNGVSVQRSSSSTLLVAALVDERSNSTSLELGDLVTGRIVGPVQRLDGVGA 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP RL Q   T   ++      N +      G + +         
Sbjct: 174 VQLFGSG-YAMRIWMDPLRLTQFGVTPEDVTAAVTDQNANVTVGELGGQPIPIGQQITIP 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  + ++                 +    +          F     +I            
Sbjct: 233 LSAQSQL-------------RTAAEFERILLKTSRDGSTVFLGDVADISIGQESYGTSGR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      S     +   T        A L                      S    
Sbjct: 280 YNGQPAAGFSVSLTPGANTVATAGLVRETLAALAEALPEGVEVAYPYDISPFIEQSIEQV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV +V+F+ +   +  L+   ++ + ++ T  +L L G T+   ++  +VL
Sbjct: 340 YYTLIEAVVLVFVVIFVFLQSWRATLIPVVAVPVVLLGTFGVLLLFGYTINTLTMFALVL 399

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IGL VD  I+V E +    + +      + +       S +    +      + + F  
Sbjct: 400 AIGLLVDDAIVVVENVERIMHEEGLDPVAATEKSMKEITSALIGIVLVLSAVFLPMAFMT 459

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-------KSIDINPLSRF 531
           G      R F++T+  ++ +S+  A+ +  AM   +++  +        +  + +     
Sbjct: 460 GSTGAIYRQFSVTIITAMALSLGVAVILTPAMCATLLKQNRHGARFGPARWFNASLERTT 519

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +A+   R     V ++ + +                + +G + + V        
Sbjct: 520 SGYGRSVAVLIRRPFAMLVVLAAITASALWFYDRLPSSFIPQEDQGVLLVMVATPDGSTT 579

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               + +  ++   +       E  F V      G   +   +   +        
Sbjct: 580 PKTEARVAEVEDYLLHTSGGAVESVFGVMGFSFNGSGQSSAMLFVKLADYEQRDG 634



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 74/247 (29%), Gaps = 19/247 (7%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
              +  G        N  V L    + +   Q   I                       A 
Sbjct: 775  QPEDIGRWYARNDTNEMVSLDAFTTLVWDEQPTSIDRFAATQGLALTGTAAKGVSSGDAM 834

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              + E+V +         T  + +         L+   +  +++      +Y      W 
Sbjct: 835  LAMEELVSEHGGGFGVEWTDLSYQERLSGNQAPLLY-ALSALVVFLALAALY----ESWA 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + T+ + I   +G    FG   ++     +LT IG +  + +++ +   +  +  
Sbjct: 890  LPLAVMMTVPVGIFGAIGAALYFGQLNDVYFKVGLLTTIGLAARNAILIVEFAEEQRRE- 948

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-----------VWGGSVIGSFAIP 800
                +  +    +    L   + T++A    VLP+A             G  V+G  A  
Sbjct: 949  --GKALVEAAIAACRMRLRPILMTTLAFMFGVLPLATASGAGAAAQQSIGIGVLGGMAAA 1006

Query: 801  MAFGIVV 807
               GI +
Sbjct: 1007 AVIGIFL 1013



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 57/147 (38%), Gaps = 5/147 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T G   LFG   N   + A++  IG  V+D +VV + +    
Sbjct: 360 SWRATLIPVVAVPVVLLGTFGVLLLFGYTINTLTMFALVLAIGLLVDDAIVVVENV--ER 417

Query: 749 KLYTTSISFRDLIDKS---INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
            ++   +      +KS   I   L   V    A F+ +  M    G++   F++ +   +
Sbjct: 418 IMHEEGLDPVAATEKSMKEITSALIGIVLVLSAVFLPMAFMTGSTGAIYRQFSVTIITAM 477

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++   ++ +   +   +       AR
Sbjct: 478 ALSLGVAVILTPAMCATLLKQNRHGAR 504


>gi|311278931|ref|YP_003941162.1| acriflavin resistance protein [Enterobacter cloacae SCF1]
 gi|308748126|gb|ADO47878.1| acriflavin resistance protein [Enterobacter cloacae SCF1]
          Length = 1025

 Score =  157 bits (397), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/620 (10%), Positives = 168/620 (27%), Gaps = 44/620 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISLAITLCGVL-----GFRLLPVAPLPQVDYPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +               +I L F  SR     A  V   +   
Sbjct: 56  PETMASSIATPLERSLGRISGVNEMTSMSSLGSTRIILQFDFSRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    +   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAQTLSQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  + +P  L     +   +       N          +  R        
Sbjct: 175 VDIGGSSLPAVRVDLNPQALFNQGVSLDNVRTAITNANVRNPQGAIDDKTHRWQLATNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YRPLIVHYNNGAAVRLSDVAKVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       LR          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPALRQTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENISHHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++          +++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLAVSLTLTPMMCGWMLKSSRGHAPTRIRGFGRVLVAMQRG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G+ +    ++     +      +     G +   + A++ +    
Sbjct: 515 YGSSLKWVLNHVRLVGLVLLGTIALNVWLYISIPKTFFPEQDTGVVMGNIQADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDG 613
           +R  L+         +  D 
Sbjct: 575 MRGKLQDFMKIIREDKAVDN 594



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   + + + +T++   S+I+ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TISFNLPTGKSLSEASDAIDRTMTQLGVPSSIRGSFAGTAQVFQQTMNSQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGMLYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     +   + I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRNGN--LPPEEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + AR
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFAR 1017



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 70/215 (32%), Gaps = 7/215 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   +      I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPALRQTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +          +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---SHHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             FA+ ++  I ++ + S+    P++       ++
Sbjct: 461 REFAVTLSVAIGISLAVSL-TLTPMMCGWMLKSSR 494


>gi|265766630|ref|ZP_06094459.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           2_1_16]
 gi|263253007|gb|EEZ24483.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           2_1_16]
          Length = 1068

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 74/694 (10%), Positives = 180/694 (25%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFTLPVEQYPDIAPPTIM---------VSTSYFGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S        IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSSATNAGTVSITVYFKQGTDPDMAAVNVQNRVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           +  I      +I       
Sbjct: 115 ATGQLPSEVNQVGVTTSKRQTSILQMFSLHSPDDSYDEAFLANYISINLKPKILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        L     P  + Q     + +S      N       FG            
Sbjct: 175 DMMIMG-GDYSLRIWMKPDVMAQYRLIPSDVSTVLAEQNIESATGSFGENSDETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++                   +    +       +         I           
Sbjct: 234 YKGRRI----------------TPEEFGEIVIRSTDDGQVLKLKDIATIELGQESYAYSG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +               R              +      S   
Sbjct: 278 TTDGHNGVSCMLFQTAGSNATEVNNQINRFLEEARKELPQGVELTQLMSSNDFLYASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I +++I T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLLEAILLVILVVYVFLQDIRSTLIPLVGIIVSLIGTFAFMAIAGFSINLITLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQARFDVGYKSSYMASVDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 SGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALLLKPYINEDGTQKQNFAARFRKAF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        I + F++ R+    + I      + L+ T   +   D   G+    +
Sbjct: 518 NAAFDVVVEKYKGIVLFFIKRRWLTGSLLIASIALLVVLMNTTKTSLVPDEDQGVVFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +           ++       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLRTTDDVMKRIEERMEQIPQVKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q         + ++    +  +    I
Sbjct: 638 PGKEDDVQAVIGQVYGRTADIKDASVFAISPGMI 671



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 87/201 (43%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +    R LE  +K++ + V L+ + ++         E+++  +  +++  + + +++   
Sbjct: 301 NNQINRFLEEARKELPQGVELTQLMSSNDFLYASIHEVVKTLLEAILLVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  +I+ +  T  F A+ G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 359 -DIRSTLIPLVGIIVSLIGTFAFMAIAGFSINLITLFALVLVIGTVVDDAIVVVEAVQAR 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
             +   S     +   ++       + +S+      +P++   G+       F + MA  
Sbjct: 418 FDVGYKSSYMASV--DAMKGISNAVITSSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           + ++A +++ ++  +   +  
Sbjct: 476 VGISAVNALTLSPALCALLLK 496



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/201 (12%), Positives = 65/201 (32%), Gaps = 11/201 (5%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            + ++                  G     E  + G   +I     ++IY+    +   +  
Sbjct: 838  DAIRAVQETASTSLPKGYGYDYGGITREENQQSGTTAIIFGICFLMIYLILSALYESFLI 897

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + ++   +  +  F  +FG+E N+     ++ LIG      +++     +      
Sbjct: 898  PFAVLLSVPCGLMGSFLFARMFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERR 953

Query: 753  T-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +        +    L   + T++     +LP+ V    G +   S       G+V+ 
Sbjct: 954  KAGMGLIASALSAAKARLRPILMTALTMIFGLLPLMVASGVGANGNRSLGTGAVGGMVIG 1013

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
              + +FI   + +     + +
Sbjct: 1014 TLALLFIVPSLFIAFQWLQER 1034


>gi|261820618|ref|YP_003258724.1| multidrug efflux system subunit MdtB [Pectobacterium wasabiae
           WPP163]
 gi|261604631|gb|ACX87117.1| acriflavin resistance protein [Pectobacterium wasabiae WPP163]
          Length = 1040

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/586 (11%), Positives = 153/586 (26%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMFAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F      +     V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSTQSAGGASVITLQFQLELSLDVAEQDVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D       +        +++   +        +    +  +   +I        
Sbjct: 125 SNLLPSDLPYPPTYSKVNPADPPIMT-LAVTSTAMSMTQVQDMVDNRIAQKISQVAGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +   L     T+  +       N +                    
Sbjct: 184 VSLAGGQRPAVRVRLNAPALAAYGLTSETIRTAITAANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+      +                 I +    +  G  
Sbjct: 236 ------------VTLSANDQMKSVDDYRRLIVAWKNGAPVRLQDVATIEQAAENIHLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L+A                +   S    
Sbjct: 284 ANRQQAIIINVQRQPGANVITTTDSINKMLPALKASLPNAVEVTTLTDRTTSIRASVKDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYLFLRNAVATLIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLNAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----KKMKSIDINPLSRFFLIP 535
             G   R FA+T+ +SILIS   ++++   M   ++ +    K+ +    +      LI 
Sbjct: 464 IVGRLFREFAVTLAVSILISAVVSLTLTPMMCARMLSHQSLSKQNRFTRASERFFTRLIT 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                         + +S+      + +L    +  G        +
Sbjct: 524 VYGVWLRKVLNHPWLTLSVALGTLLLTILLYIWIPKGFFPIQDNSI 569



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 86/270 (31%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S               + +K G  + +     ++ +    +L +      +   
Sbjct: 233 TRSVTLSANDQMKSVDDYRRLIVAWKNGAPVRLQDVATIEQAAENIHLGAWANRQQAIII 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +     +      +     +   +   +          +       +  EL+    
Sbjct: 293 NVQRQPGANVITTTDSINKMLPALKASLPNAVEVTTLTDRTTSIRASVKDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 349 --LAIALVVMVIYLFLR-NAVATLIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         +   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLNAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVSILISAVVSLTLTP 492



 Score = 45.1 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++     + +      A    ++ + +   ++   + I           +  +   +  +
Sbjct: 811  DQFPSTTISFNVASGYALGEAVDAITQAEQQMNLPADITTRFQGSTLAFQSALSSTVWLI 870

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I + +AM I + + ++ +   +  ++TL       L    + G E ++ A+  ++ LIG 
Sbjct: 871  IAAIVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMMAGNELDVIAIIGIILLIGI 930

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D            ++  D I ++        + T+MAA +S LP+ +    
Sbjct: 931  VKKNAIMMID--FALAAEREQGMTPYDAIYQACLLRFRPILMTTMAALLSALPLMLSTGV 988

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     + M  G++++   ++F    I L      A+  R
Sbjct: 989  GAELRQPLGVCMVGGLIMSQILTLFTTPVIYLLFDRLAARFRR 1031


>gi|332883302|gb|EGK03585.1| hypothetical protein HMPREF9456_01652 [Dysgonomonas mossii DSM
           22836]
          Length = 1056

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/540 (11%), Positives = 147/540 (27%), Gaps = 35/540 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    ++++P   P                      
Sbjct: 8   RPVLSTVISVIIVVLGII-----GLATLPVEQYPDIAPPTVQ---------VQATYPGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   + +  +E  + ++       S       I + F      +  +  V       
Sbjct: 54  ADVVLNSVVIPLEEQINGVEGMTYMTSSASNGTATIKVLFKQGVNPDIASVNVQNLAARA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  +  +  ++ + ++  +++    + +                 + QI        
Sbjct: 114 TPLLPQEVTQLGVIVSKQQNSTLLGLTLSTNNPDYDGEFLQNYANINILPQIKRVYGVGN 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +     P  +     +  ++S      N        G    +        
Sbjct: 174 ASVFGARDYSMRVWLKPDVMAAYKISVQEISAALADQNIEAAPGELGQNSDQ-------- 225

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                KT +   +I       +         +            
Sbjct: 226 ---------SFQYTMRYTGKLKTEEEFGNIILRSQDGQILRLKDVAKVELGSLSYSVVSE 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +    A  +    I+    +                   +      S    
Sbjct: 277 TDKNQSVFIMIYQTAGSNAQEVIKNVKTVLNDAEKTLPSGVKINYIMDSSEFLDASIEKV 336

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV IV+F+ +   +  L+   ++ + +I T   L + G ++ L ++  +VL
Sbjct: 337 IHTLIEAFILVFIVVFVFLQDIRSTLIPAIAVPVAIIGTFFFLQVFGFSINLLTLFALVL 396

Query: 423 GIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +  +     +    +           I    +      + + F G
Sbjct: 397 AIGIVVDDAIVVVEAVHAQLDAGEKDPKVATMTALKEIAPAIISITLVMSAVFIPVSFIG 456

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G +    + F +T+ ++ILIS   A+++  A+    ++    +      + RF+   +  
Sbjct: 457 GTSGIFFKQFGLTLSIAILISAVNALTLSPALCALFLKPHDEEHKSKGFIQRFYYYFNMT 516



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 93/253 (36%), Gaps = 6/253 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I L     + + L  V           +  +    +  F++  Q    ++    + ++
Sbjct: 244 GNIILRSQDGQILRLKDVAKVELGSLSYSVVSETDKNQSVFIMIYQTAGSNAQEVIKNVK 303

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALG 695
            V     + +P     N  +   +     I K I  +I + I + I +++        L 
Sbjct: 304 TVLNDAEKTLPSGVKINYIMDSSEFLDASIEKVIHTLIEAFILVFIVVFVFLQDIRSTLI 363

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
               + + I  T  F  +FG   NL  + A++  IG  V+D +VV + +   +       
Sbjct: 364 PAIAVPVAIIGTFFFLQVFGFSINLLTLFALVLAIGIVVDDAIVVVEAVHAQLDAGEK-- 421

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
             +     ++ E     +  ++      +P++  GG+       F + ++  I+++A ++
Sbjct: 422 DPKVATMTALKEIAPAIISITLVMSAVFIPVSFIGGTSGIFFKQFGLTLSIAILISAVNA 481

Query: 813 IFIAAPILLFIYD 825
           + ++  +      
Sbjct: 482 LTLSPALCALFLK 494



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 67/239 (28%), Gaps = 40/239 (16%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              + +     D  +   VL ++++   +          E  G              +I  
Sbjct: 820  IDLTVIPNLIDGKSTGDVLRLLEEWSQDKTIFPDGYTFEYSGMTREEAN-SGSQTVLIFG 878

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS--- 733
               + +Y+ +             L       L    LF +   L  V   L + G S   
Sbjct: 879  ICLIFVYLLLS-----------ALYESYIIPLAV--LFSLPVGLAGVFIFLMIFGLSRGI 925

Query: 734  VN-----------------DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            VN                 + +++ +     ++     +S  +         L   + TS
Sbjct: 926  VNNIYVQISMIMLIGLLAKNAILIVE---YALQRRQQGMSIVEAAVNGAVARLRPILMTS 982

Query: 777  MAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             A    +LP+    G   I   S  I    G+ +     + +   + +     + K ++
Sbjct: 983  FAFIAGILPLMFASGAGAIGNRSIGISAVGGMFIGTMLGVLVIPSLYIIFQTIQDKISK 1041



 Score = 42.0 bits (96), Expect = 0.41,   Method: Composition-based stats.
 Identities = 55/545 (10%), Positives = 146/545 (26%), Gaps = 38/545 (6%)

Query: 5    PWLVILYSMI---CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
             W+ +   ++      GL+  LP        +     +    +  G  L     +V EV 
Sbjct: 537  RWITVAIIIVSSVVLFGLMKLLPTGF--VPNEDSGGVLAFVTLPPGSSLERTDSVVSEVV 594

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGV-FSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                    +    + ++S     G+     M      + +       ++   ++V+  L+
Sbjct: 595  -------KIAHDIEGVKSVTNITGVNFMAGMNSSYGTLVVKMEPWNDRKLSTNEVSAILK 647

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               SK+       +   T +        +  +       I +  ++ +  I ++      
Sbjct: 648  EKTSKIKGATFFFVATPTLQGFGLGAGVEMQLQDRTGGDINKFNDVAQNIIQKLRARNDV 707

Query: 181  IQRLGSHRILIQLPGEQ--DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
            +    ++        E   D  +++    T +++         S     F +   +    
Sbjct: 708  VLMAMTNFNPAFPQKEISADLPKIKAAGLTLSEVMGSLQAYVGSSYASTFNLYGKQFRVV 767

Query: 239  NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             Q   E                   +    +  +                ++   +A   
Sbjct: 768  LQASPE-----------------YRRQWDDLSGLFVKTKTGEMAPITEFLHVEDIVAPPT 810

Query: 299  DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP-IKLNIVEERNVGADLG 357
              R      I+  +            +       +  +                  A+ G
Sbjct: 811  LSRFNMYSSIDLTVIPNLIDGKSTGDVLRLLEEWSQDKTIFPDGYTFEYSGMTREEANSG 870

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG--ATLTLP 415
            S ++      ++   +L+            ++    + L  +    ++  L       + 
Sbjct: 871  SQTVLIFGICLIFVYLLLSALYESYIIPLAVLFSLPVGLAGVFIFLMIFGLSRGIVNNIY 930

Query: 416  SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
                +++ IGL   + IL+ E   +  ++  S+  +   G       I  ++   +   +
Sbjct: 931  VQISMIMLIGLLAKNAILIVEYALQRRQQGMSIVEAAVNGAVARLRPILMTSFAFIAGIL 990

Query: 476  VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
             L F    G    R   I+    + I     + ++ ++ I     +   S      S   
Sbjct: 991  PLMFASGAGAIGNRSIGISAVGGMFIGTMLGVLVIPSLYIIFQTIQDKISKSGMINSNDE 1050

Query: 533  LIPDC 537
             I   
Sbjct: 1051 FINKN 1055


>gi|304396373|ref|ZP_07378254.1| acriflavin resistance protein [Pantoea sp. aB]
 gi|304355882|gb|EFM20248.1| acriflavin resistance protein [Pantoea sp. aB]
          Length = 1077

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 61/535 (11%), Positives = 147/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G+               +P+                   +     
Sbjct: 10  RPVATILLMVGVLISGIFAYKFLSTSALPQVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PDVMASSVTSPLERQLGQMAGLSQMSSTSASGASIITLKFSLDLSLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N+ L  +              S V++            E    +  +   ++        
Sbjct: 116 NNLLPDNLPNPPTYKKVNPADSAVVTLAASSS-TLPLTEVQDLVNTRVALKLSQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     T   ++      N +     F  ++   +      
Sbjct: 175 VTLAGGHQPAIRVQMNPQALAAHHLTLEAVNTLIGNSNVNGSKGGFDGKYHSVTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                           ++                +I +          
Sbjct: 235 LRTA--------------------DAYGNLILTYENGAALRLKDIAHIEQGPENSFQSAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++        L+A         +          S S  
Sbjct: 275 ANNQPAIVISVQRQPGANVIQVVDNIKAQLPALQAALPDGVKMTILSDRTQTIRASISDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      L+   ++ L++I T  ++ L G +L   S+  + +
Sbjct: 335 QFELMLSIALVVMVTFLFLRNVAATLIPSVAVPLSLIGTFGVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  +D  I+V E I     + +S   +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVIDDAIVVVENISRRLEQGESPMEAALKGSQQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G   R FAIT+ ++IL+SM  ++++   +  +++R+   +           L 
Sbjct: 455 VVGRLFREFAITLAVAILVSMLVSLTLTPMLCAYLLRHIPPEQQSTFSRKGGELF 509



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 86/231 (37%), Gaps = 12/231 (5%)

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             + SFQ+        + +  Q        +V++ +K ++  +           +    +
Sbjct: 265 GPENSFQSAWANNQPAIVISVQRQPGANVIQVVDNIKAQLPALQAALPDGVKMTILSDRT 324

Query: 663 RELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           + +          + + I+ + M+ ++++R      L     + L +  T G   L G  
Sbjct: 325 QTIRASISDVQFELMLSIALVVMVTFLFLR-NVAATLIPSVAVPLSLIGTFGVMYLAGFS 383

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            N  ++ A+    G+ ++D +VV + +    +      S  +   K   +     +  + 
Sbjct: 384 LNNLSLMALTIATGFVIDDAIVVVENI---SRRLEQGESPMEAALKGSQQIGFTIISLTF 440

Query: 778 AAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +    ++P+   G   G +   FAI +A  I+V+   S+ +   +  ++  
Sbjct: 441 SLIAVLIPLLFMGDVVGRLFREFAITLAVAILVSMLVSLTLTPMLCAYLLR 491



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 76/202 (37%), Gaps = 6/202 (2%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
                  +     ++    +            +      +  ++ + I M + + I ++ +
Sbjct: 862  EDGQRAIADVRQQLHLPESTTLRYQGETSAFQSATGNTLWLILAALITMYVVLGILYESF 921

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               +  ++TL       L    L G EF+L A+  V+ LIG    + +++ D   +    
Sbjct: 922  IHPVTILSTLPSAAVGALLTLLLAGTEFSLIALIGVILLIGIVKKNAIMMIDFALE--AE 979

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
            +   +S RD I ++        + T+MAA +  LP+ +    G  +     + +  G++V
Sbjct: 980  HKQHLSPRDAIHQACLLRFRPILMTTMAALLGALPLMLASGSGAELRQPLGLVIVGGLIV 1039

Query: 808  AASSSIFIAAPILLFIYDWRAK 829
            +   ++F    I L       +
Sbjct: 1040 SQVLTLFSTPVIYLLFDGLAQR 1061


>gi|296389050|ref|ZP_06878525.1| putative Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa PAb1]
          Length = 1043

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/515 (12%), Positives = 140/515 (27%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           +   P                    +     
Sbjct: 10  RPVATTLLMVAILLSGLIA-----YRFLPISALPEVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S     + ITL F+     +    +V   +   
Sbjct: 56  PEIMTSSITAPLENQLGQIPGLNEMSSSSSGGASVITLQFSLQSNLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     + +      + +L+   +        +    +  +   +I        
Sbjct: 116 QSLLPNDLPNQPVFSKVNPADAPILTLAVMSDG-MPLPQIQDLVDTRLAQKISQISGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +P+ L     +   +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRVRANPTALAAAGLSLEDLRSTVTSNNLNGPKGSFDGPTRASTLDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                           D+                ++      V     
Sbjct: 235 LRSA--------------------DAYRDLIIAYKNGSPLRIRDVASVEDDAENVRLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L++         V          S    
Sbjct: 275 ANNLPAVVLNIQRQPGANVIEVVDRIKALLPQLQSTLPGNLDVQVLTDRTTTIRASVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V F+ +      L+  F++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QFELALAVALVVMVTFLFLRNVYATLIPSFAVPLSLIGTFGVMYLSGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMVENIARYLEQGDSPLEAALKGSKQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FAIT+ ++ILIS F ++++   +   +
Sbjct: 455 VAGRLFREFAITLAVAILISGFVSLTLTPMLSAKL 489



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 84/245 (34%), Gaps = 12/245 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           ++A +      +R         +             V L  Q         V++ +K  +
Sbjct: 245 IIAYKNGSPLRIRDVASVEDDAENVRLAAWANNLPAVVLNIQRQPGANVIEVVDRIKALL 304

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAI 697
            ++           V    +  +          + + ++ + M+ ++++R   Y  L   
Sbjct: 305 PQLQSTLPGNLDVQVLTDRTTTIRASVKDVQFELALAVALVVMVTFLFLR-NVYATLIPS 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + L +  T G   L G   N   + A+    G+ V+D +V+ + +    +      S 
Sbjct: 364 FAVPLSLIGTFGVMYLSGFSINNLTLMALTIATGFVVDDAIVMVENI---ARYLEQGDSP 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
            +   K   +     +  + +    ++P+   G   G +   FAI +A  I+++   S+ 
Sbjct: 421 LEAALKGSKQIGFTIISLTFSLIAVLIPLLFMGDVAGRLFREFAITLAVAILISGFVSLT 480

Query: 815 IAAPI 819
           +   +
Sbjct: 481 LTPML 485



 Score = 45.8 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
                      + I ++        + T+MAA +  LP+ + GG    +     I M  G+
Sbjct: 936  AERNEGKPPHEAIYQACLLRFRPILMTTMAALLGALPLMLAGGAGAELRQPLGITMVGGL 995

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +++   ++F    I L+      + A
Sbjct: 996  LLSQVLTLFTTPVIYLYFDRLARRWA 1021


>gi|225017748|ref|ZP_03706940.1| hypothetical protein CLOSTMETH_01677 [Clostridium methylpentosum
           DSM 5476]
 gi|224949541|gb|EEG30750.1| hypothetical protein CLOSTMETH_01677 [Clostridium methylpentosum
           DSM 5476]
          Length = 320

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 81/314 (25%), Positives = 145/314 (46%), Gaps = 16/314 (5%)

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                   +  R   + IS+   + +I      GL+  I FKGG  + V     ++L   
Sbjct: 1   MKTRNFDVVGKRKIFILISLAIMVVAILFTIFRGLSVDIKFKGGTIINVPFTGEMNLGDA 60

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMVKKKITEIVPLSTIQN 653
            S +      ++S +    EKN    L     D+       ++ +   + E  P +    
Sbjct: 61  ESFVGDKLGKNVSVRQTTDEKNKTNNLVITLSDNTEVTAEQVDELTTALQEKYPDNIQLQ 120

Query: 654 T-------EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK----WYFALGAITTLIL 702
                     V P+  +E   K +V V+ S + +++YI  RF+    W   L AI  L+ 
Sbjct: 121 DASTEVVVTSVNPQAGKEFFFKCLVAVVFSFLVLIVYIGFRFRKIGGWSAGLMAIVALLH 180

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           D       FA+FG+  N   +A +LT++GYS+N+ +V+YDR+R+N ++  +  S + L++
Sbjct: 181 DCIMVYAAFAIFGMPINDNFMAVLLTILGYSINNTLVIYDRIRENKQIMGSGTSLKTLVN 240

Query: 763 KSINETL----GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            SIN+TL      +V T MA  + ++   V G + + SF  P+  G+V  A SS+ ++ P
Sbjct: 241 TSINQTLTRTINTTVTTVMAMVVVLIVCLVSGITSMISFVFPLVVGMVAGAYSSVCLSGP 300

Query: 819 ILLFIYDWRAKNAR 832
           + + + + RA   +
Sbjct: 301 LWVLLKEKRANKGK 314


>gi|168070131|ref|XP_001786704.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660673|gb|EDQ48482.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 445

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 127/259 (49%), Gaps = 3/259 (1%)

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           M    +    ++L ++ +  ++FT G NY IDF GG    +     V +  +R  LE+  
Sbjct: 1   MGPARFITLATLLLAVLAAGVVFTKGFNYSIDFTGGTAYTLRTGPEVGVDTLRRFLETKG 60

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                      +       ++              +++ +   +  + + + E VGP I 
Sbjct: 61  FPAKEAVITQVQAPTADYREFSVKLPPLPDAKRLELERLLGAELRATVLTS-ETVGPAIG 119

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            EL R  ++ V++    +LIY+  RF W F + ++  +  D+    G ++L G+EF++  
Sbjct: 120 SELRRNAVMAVLVGLGLILIYVAFRFDWTFGVASVLAVAHDVAIVAGMYSLLGLEFSIPT 179

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +AA+LT++GYS+ND +VV DR+R+N KL    + +R+++++SIN+TL R+    +   + 
Sbjct: 180 IAALLTIVGYSINDSIVVSDRIRENQKLL-RGVPYREMVNRSINQTLSRTTSLKVGVILP 238

Query: 783 V-LPMAVWGGSVIGSFAIP 800
           +    AV G + +    + 
Sbjct: 239 LSGASAVSGKAALNGIQLA 257


>gi|170749262|ref|YP_001755522.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
 gi|170655784|gb|ACB24839.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 1054

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/518 (12%), Positives = 142/518 (27%), Gaps = 42/518 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      ++   I  +G++       P   +   P                   +   L 
Sbjct: 11  RFPVATTLIMVGILFLGVVA-----YPLLGVAPLPQVDFPT-----------IQVTAQLP 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + +   +    +   S +        +     + +T+ F  +R  +  A  +   +
Sbjct: 55  GASPETMASSVAQPLERQFSQIPGVSQMTSTSSLGISTVTVQFDLNRNIDGAASDIQAAI 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
              + +L  +              S +L   +        I+    +  Q   +I     
Sbjct: 115 NAASGQLPKNLPTPPTYRKVNPADSPILL-LSATSDSMPLIDVDDAVDVQLAQRISQISG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q     +    +  + DP++L     +   +     L                     
Sbjct: 174 VAQVFIGGQQKPAVRIQIDPAKLVAKGLSLEDVRAQLTL--------------------T 213

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                      G H     AN          D+                           
Sbjct: 214 TVNNPKGSIDGGSHSYTIYANDQLTAAHNWNDVIVAYRDGAPLRVRDIGQAVAGPEDTKQ 273

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                       +   +   +   T+++       L A         +          S 
Sbjct: 274 AGWTNGKRGIFLVVFKQPGANVIDTVDSIKAQLPRLTATLPAAIKVGILSDRTQTIRASV 333

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              + T  +   LV+ V+F+ +      ++   ++ L ++   AL+ + G TL   S+  
Sbjct: 334 EDVQFTLLLTIVLVVGVIFVFLRSFWATVIPSVTVPLALLGACALMWMAGYTLDNLSLMA 393

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + + +G  VD  I+V E I     +      +   G      TI   +++ +   + L  
Sbjct: 394 LTISVGFVVDDAIVVLENISRYVEEGMRPMEAAFKGAGEIGFTIVSISVSLIAVLIPLLL 453

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
            GG      R FA+ + ++I +S F ++++   M   +
Sbjct: 454 MGGIIGRLFREFAVVLSMTIAVSAFVSLTLTPMMASRL 491



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 92/260 (35%), Gaps = 10/260 (3%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +T   N  +         ++A R      VR   +++   + + Q         + L   
Sbjct: 229 YTIYANDQLTAAHNWNDVIVAYRDGAPLRVRDIGQAVAGPEDTKQAGWTNGKRGIFLVVF 288

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI---RKGIVGVIISAIAML 681
                     ++ +K ++  +           +    ++ +          ++++ + ++
Sbjct: 289 KQPGANVIDTVDSIKAQLPRLTATLPAAIKVGILSDRTQTIRASVEDVQFTLLLTIVLVV 348

Query: 682 IYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
             I+     ++  +    T+ L +        + G   +  ++ A+   +G+ V+D +VV
Sbjct: 349 GVIFVFLRSFWATVIPSVTVPLALLGACALMWMAGYTLDNLSLMALTISVGFVVDDAIVV 408

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSF 797
            + +    +     +   +   K   E     V  S++    ++P+ + GG +      F
Sbjct: 409 LENI---SRYVEEGMRPMEAAFKGAGEIGFTIVSISVSLIAVLIPLLLMGGIIGRLFREF 465

Query: 798 AIPMAFGIVVAASSSIFIAA 817
           A+ ++  I V+A  S+ +  
Sbjct: 466 AVVLSMTIAVSAFVSLTLTP 485



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 86/220 (39%), Gaps = 6/220 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +     VA  +  E + + + E+    T+ +      +  ++ +    + +
Sbjct: 804  GQFPAVTISFNLAPDVALGQATEAIGRAMRELQVPPTVVSGFQGTAQAFQQSLSTVPLLI 863

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + +   + + + I ++ +   L  ++TL       L      G +F+L A+  ++ LIG 
Sbjct: 864  LAALFVVYLILGILYESFIHPLTILSTLPSAGVGALAVLMWAGFDFSLIALIGIILLIGI 923

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D     +      +S    I K+        + T+MAA +  +P+ V    
Sbjct: 924  VKKNGIMLVD--FAIVAEREEGLSPEVAIRKAALLRFRPILMTTMAALLGGIPLMVATGT 981

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G  +       M  G+ V+   ++F    I +++     +
Sbjct: 982  GSEIRQPLGYAMVGGLAVSQVLTLFTTPVIYIYLDRLAHR 1021


>gi|15597723|ref|NP_251217.1| Resistance-Nodulation-Cell Division (RND) efflux transporter
           [Pseudomonas aeruginosa PAO1]
 gi|107101974|ref|ZP_01365892.1| hypothetical protein PaerPA_01003021 [Pseudomonas aeruginosa PACS2]
 gi|116050471|ref|YP_790710.1| putative RND efflux transporter [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218891494|ref|YP_002440361.1| putative Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa LESB58]
 gi|254235522|ref|ZP_04928845.1| hypothetical protein PACG_01443 [Pseudomonas aeruginosa C3719]
 gi|254240958|ref|ZP_04934280.1| hypothetical protein PA2G_01638 [Pseudomonas aeruginosa 2192]
 gi|313107425|ref|ZP_07793615.1| putative RND efflux transporter [Pseudomonas aeruginosa 39016]
 gi|9948583|gb|AAG05915.1|AE004680_3 probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa PAO1]
 gi|115585692|gb|ABJ11707.1| putative RND efflux transporter [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167453|gb|EAZ52964.1| hypothetical protein PACG_01443 [Pseudomonas aeruginosa C3719]
 gi|126194336|gb|EAZ58399.1| hypothetical protein PA2G_01638 [Pseudomonas aeruginosa 2192]
 gi|218771720|emb|CAW27494.1| probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa LESB58]
 gi|310880117|gb|EFQ38711.1| putative RND efflux transporter [Pseudomonas aeruginosa 39016]
          Length = 1043

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/515 (12%), Positives = 140/515 (27%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           +   P                    +     
Sbjct: 10  RPVATTLLMVAILLSGLIA-----YRFLPISALPEVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S     + ITL F+     +    +V   +   
Sbjct: 56  PEIMTSSITAPLENQLGQIPGLNEMSSSSSGGASVITLQFSLQSNLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     + +      + +L+   +        +    +  +   +I        
Sbjct: 116 QSLLPNDLPNQPVFSKVNPADAPILTLAVMSDG-MPLPQIQDLVDTRLAQKISQISGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +P+ L     +   +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRVRANPTALAAAGLSLEDLRSTVTSNNLNGPKGSFDGPTRASTLDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                           D+                ++      V     
Sbjct: 235 LRSA--------------------DAYRDLIIAYKNGSPLRIRDVASVEDDAENVRLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L++         V          S    
Sbjct: 275 ANNLPAVVLNIQRQPGANVIEVVDRIKALLPQLQSTLPGNLDVQVLTDRTTTIRASVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V F+ +      L+  F++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QFELALAVALVVMVTFLFLRNVYATLIPSFAVPLSLIGTFGVMYLSGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMVENIARYLEQGDSPLEAALKGSKQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FAIT+ ++ILIS F ++++   +   +
Sbjct: 455 VAGRLFREFAITLAVAILISGFVSLTLTPMLSAKL 489



 Score = 84.7 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 84/245 (34%), Gaps = 12/245 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           ++A +      +R         +             V L  Q         V++ +K  +
Sbjct: 245 IIAYKNGSPLRIRDVASVEDDAENVRLAAWANNLPAVVLNIQRQPGANVIEVVDRIKALL 304

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAI 697
            ++           V    +  +          + + ++ + M+ ++++R   Y  L   
Sbjct: 305 PQLQSTLPGNLDVQVLTDRTTTIRASVKDVQFELALAVALVVMVTFLFLR-NVYATLIPS 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + L +  T G   L G   N   + A+    G+ V+D +V+ + +    +      S 
Sbjct: 364 FAVPLSLIGTFGVMYLSGFSINNLTLMALTIATGFVVDDAIVMVENI---ARYLEQGDSP 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
            +   K   +     +  + +    ++P+   G   G +   FAI +A  I+++   S+ 
Sbjct: 421 LEAALKGSKQIGFTIISLTFSLIAVLIPLLFMGDVAGRLFREFAITLAVAILISGFVSLT 480

Query: 815 IAAPI 819
           +   +
Sbjct: 481 LTPML 485



 Score = 45.8 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
                      + I ++        + T+MAA +  LP+ + GG    +     I M  G+
Sbjct: 936  AERNEGKPPHEAIYQACLLRFRPILMTTMAALLGALPLMLAGGAGAELRQPLGITMVGGL 995

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +++   ++F    I L+      + A
Sbjct: 996  LLSQVLTLFTTPVIYLYFDRLARRWA 1021


>gi|229586412|ref|YP_002844913.1| Hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rickettsia
           africae ESF-5]
 gi|228021462|gb|ACP53170.1| Hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rickettsia
           africae ESF-5]
          Length = 1008

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 76/625 (12%), Positives = 173/625 (27%), Gaps = 53/625 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  +G +     F  +  +   P                   + +E  
Sbjct: 9   KRPVFATVLNLVIVALGAI-----FFTKLQIRGTPDISVPI-------------INVEAH 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +   +    ++    +K            ++ ITLSF  S   E   + V  
Sbjct: 51  YAGADALYMEQEITTRIEKALKTVKNLDYITSQSSTGESSITLSFLLSTDIEVALNDVRA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  +      D K   +          +      DQ     +E +  +       +   
Sbjct: 111 KISDITYMFPQDMKTPSVTKLDADSFPSLFISIESDQYSD--LELTKIVEDNLQTPLDKL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           ES  Q          +  E D  +L Q   +  ++       N          +      
Sbjct: 169 ESVGQSQIYGGREYIMRIEPDSKKLYQHKISLLEIESAIKEQNKDYPAGTIKTKSNNFIV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    E                      +I                 I       
Sbjct: 229 TLAGSLSTPEEFG--------------------NIILKVQNGSIIKLRDIAKISLTSPDE 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +++ +              ++          +          
Sbjct: 269 DIIFRYNGKSAIALGLIKESKANVIDLSHEVTKALERIKEYMPKGISMGIAYDAATPVKA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V ++ +   K  L+   +I +++I T +++   G ++ + ++
Sbjct: 329 SIYAVFQTIFEALILVVLVTYLFLASAKITLIPFVTIPVSLIGTFSVMYAFGFSINIFTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I++ E I   N        +  +        I    IT     + +
Sbjct: 389 LAMILAIGLVVDDAIVMLENIFRYNEMGHKPMEAAMLASKEIGFAIIAMTITLAAVFLPV 448

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPL 528
            F  G   +    FA T+   +L S F A+++   M   ++        K +   +    
Sbjct: 449 GFIEGFIGKLFIEFAWTLAFCVLFSGFVALTLTPMMSSRMVTKHNTDLPKFLVKFNDILQ 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    + + F   + + + I+  F +  I   FT  +    +  G +Q+ +     
Sbjct: 509 FIQNKYIYYLKLTFDNQKKFVIIIASSFIVLIISFKFTQKIFVPHEDDGFLQVSLKGPEG 568

Query: 589 VDLSVVRSNLESLQIGDISFQNFDG 613
            +L      ++  +    ++++  G
Sbjct: 569 SNLESSTKVVKEAEKILANYKDILG 593



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 82/245 (33%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I L V     + L  +     +    DI F+        L  ++    + +  +  + 
Sbjct: 241 GNIILKVQNGSIIKLRDIAKISLTSPDEDIIFRYNGKSAIALGLIKESKANVIDLSHEVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              ++I E +P               +  I      +  + I +++            L 
Sbjct: 301 KALERIKEYMPKGISMGIAYDAATPVKASIYAVFQTIFEALILVVLVTYLFLASAKITLI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T      FG   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 361 PFVTIPVSLIGTFSVMYAFGFSINIFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGH 417

Query: 756 SFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +    T  A F+ V  +  + G +   FA  +AF ++ +   +
Sbjct: 418 KPMEAAMLASKEIGFAIIAMTITLAAVFLPVGFIEGFIGKLFIEFAWTLAFCVLFSGFVA 477

Query: 813 IFIAA 817
           + +  
Sbjct: 478 LTLTP 482



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 82/234 (35%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              + ++              +  V +             +  + K   +++  S      
Sbjct: 777  ELIANITEKISVKSYSHYNNSKSVTISSDLAPDRKIDDAINEINKIAAKLLDPSNTIIEY 836

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            I   K  RE     ++  + + I + + +  +F+ +   L  +  +   IT  +    L 
Sbjct: 837  IGEIKQMREADSNMLITFVFALIFIYLVLAAQFESFTDPLLILLAVPFSITGGVLALWLA 896

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ +   ++TLIG    + +++ +      +L    +  ++ I +S    L   + 
Sbjct: 897  GNSLNMYSNIGLITLIGLITKNSIMIVEFAN---QLRAKGVKVQEAIIESSKLRLRPILM 953

Query: 775  TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T++AA +  LP+    G+      S    +  G+ +    +IF+   I      
Sbjct: 954  TTLAAVVGALPLVFADGASAAARNSIGFVIVGGLSIGTIFTIFVIPVIYHTFKK 1007


>gi|193069295|ref|ZP_03050251.1| multidrug resistance protein MdtB [Escherichia coli E110019]
 gi|192957428|gb|EDV87875.1| multidrug resistance protein MdtB [Escherichia coli E110019]
          Length = 1040

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 168/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV+++ ++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMINYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 57/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+ Y+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMINYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|170732520|ref|YP_001764467.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3]
 gi|169815762|gb|ACA90345.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3]
          Length = 1102

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 71/583 (12%), Positives = 157/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPAALKSNPTYRKVNPADSPIMV-VSLTSETASPAKVYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VTVSGSANPAVRVELEPQSLFHYGIGLEDVRAALASANANAP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEFGPQRFQLYTNDQASQASQYRDLVVAYRNGSAVRLSDLSDVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIETIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLRDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +S   +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGKSRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++  +                   + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLPEQHDPQSGGRFGRFLERGFARMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +    L  +     +  +   Y +  KG     
Sbjct: 515 RGYERSLSWALRRPFLILLTLFATIGLNVYLYVVVPKGFFPQQ 557



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 67/192 (34%), Gaps = 6/192 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               RV   + +    +    T+         I   L       +I  ++ +++      
Sbjct: 295 ETIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLRDTEHTLLIAVSLVVMVVFLFLR 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + I  T G   L G   +  ++ A++   G+ V+D +VV + +    
Sbjct: 355 NWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIVATGFVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +      S          E     +  S++     LP+ + GG V      FA+ ++  I
Sbjct: 412 RHIENGKSRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGIVGRLFREFALTLSLAI 471

Query: 806 VVAASSSIFIAA 817
            V+ + S+ +  
Sbjct: 472 AVSLAVSLTVTP 483



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 94/215 (43%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + +I    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      + +    S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRNH--GKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGNGDGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G+V++   +++    + L++  +R
Sbjct: 1047 LRAPLGIAIAGGLVMSQVLTLYTTPVVYLYMDRFR 1081


>gi|189219407|ref|YP_001940048.1| Cation/multidrug efflux pump [Methylacidiphilum infernorum V4]
 gi|189186265|gb|ACD83450.1| Cation/multidrug efflux pump [Methylacidiphilum infernorum V4]
          Length = 1068

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 75/608 (12%), Positives = 169/608 (27%), Gaps = 48/608 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L   +   G +      + Q     FP                  +L     
Sbjct: 9   RRPVFAWMLMIGLIFFGAISLGRLGISQLPEIDFPIIT--------------VNLQWNGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   L    ++     +        ++  Q  I L F   R  ++   +V   +  
Sbjct: 55  SPEILETELVDPIEQAVISAQGLKGVSSYIQLGQASIILEFELGRNIDSALTEVQSKISS 114

Query: 122 VN-----------SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
           V             ++     + +LV    +E  I+L   + +       +    +    
Sbjct: 115 VKLPMDPTQQVGMQQVPTPVPQPILVKDNPEEQPILLIGVSGEG--KSLHDLVSFVDLVL 172

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
            D++ I     Q + +   +  L    D  +L     T   +    +  +          
Sbjct: 173 HDELQIVPGVGQIVLAGYNIRNLRIWVDGQKLASYQLTVQDVQTAIMQEHVEVAAGDLEN 232

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
              + +           E+  I +    +    +++                       +
Sbjct: 233 SRNQFNVRAMGEGLTPEEVGDIQIKKRGSELIYRSN---------------IRIKDVAKV 277

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
              L  +                  +   +              L+          V   
Sbjct: 278 EDGLDDIRRIAATNGKTSLGIGIKKQPGANSVEVARLVKKKLQELQPFLPKGIHTEVVYD 337

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                  S      T  + A +  IV ++ +      +    SI  +V+ T  ++  LG 
Sbjct: 338 RTQYIEDSIKETLFTLLLSAVITSIVCYLFLGSWTATVNVLLSIPTSVLGTFVVIYFLGF 397

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TL   ++ G+ L IG+ VD  I+V E I       ++   +   G          + +  
Sbjct: 398 TLNFFTLLGLSLAIGIIVDDAIMVLENIYRHRDLGKNRVIASRDGAREITFAAMAATVAI 457

Query: 471 LIATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---ID 524
           +   + + F  G   +    F +T+  ++ +S+  AI++       I+  +  +      
Sbjct: 458 IAIFLPVAFMKGVIGKYFYQFGLTISAAVALSLLEAITLTPMRCSQIMDDRNKRKGLAFL 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           ++   ++        ++F  +  W V +  L        LF+      I  +      V 
Sbjct: 518 VDYAFKYLAKFYKYLLKFSLSYSWLVLVVALGLFLFSLKLFSFLPQELIPTQDESSFIVR 577

Query: 585 ANRPVDLS 592
              PV  S
Sbjct: 578 IQTPVGSS 585



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 78/244 (31%), Gaps = 7/244 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                +     +      ++Q    +        +    +         V KKI       
Sbjct: 799  TNEFMPITAVAKLQTVKTYQTLTRKMRERAITIFSNVATDKSQAEALAVAKKICSKHLPK 858

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTL 708
              +     G     E  +     + +  +   + +  +F  +      +  L   ++  L
Sbjct: 859  GYRLYLSGGAASFEETFQSLAFALWVGVVIAYMVLASQFNSFVHPFSVLLALPFSLSGAL 918

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                      NL ++  ++ L+G +  + +++ +      +L    +  ++ + ++    
Sbjct: 919  LALWFTHQSINLYSMIGLILLMGIAKKNSILLVEF---TNQLREKGMPIKEALLEAAPIR 975

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + TSMA   + LP A     G       AI +  GIVV+   ++F+     L +  
Sbjct: 976  LRPILMTSMATVAAALPPAFALGPGAESRIPMAITLLGGIVVSTVFTLFVVPSAYLLLSR 1035

Query: 826  WRAK 829
            +   
Sbjct: 1036 FEKP 1039



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/217 (10%), Positives = 66/217 (30%), Gaps = 7/217 (3%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           V + +++    +      +        I   +       ++ + I
Sbjct: 300 IKKQPGANSVEVARLVKKKLQELQPFLPKGIHTEVVYDRTQYIEDSIKETLFTLLLSAVI 359

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
             ++       W   +  + ++   +  T       G   N   +  +   IG  V+D +
Sbjct: 360 TSIVCYLFLGSWTATVNVLLSIPTSVLGTFVVIYFLGFTLNFFTLLGLSLAIGIIVDDAI 419

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG--- 795
           +V + +    +      +          E    ++  ++A     LP+A   G +     
Sbjct: 420 MVLENI---YRHRDLGKNRVIASRDGAREITFAAMAATVAIIAIFLPVAFMKGVIGKYFY 476

Query: 796 SFAIPMAFGIVVAASSSIFIAA-PILLFIYDWRAKNA 831
            F + ++  + ++   +I +        + D   +  
Sbjct: 477 QFGLTISAAVALSLLEAITLTPMRCSQIMDDRNKRKG 513


>gi|312960656|ref|ZP_07775162.1| acriflavin resistance protein [Pseudomonas fluorescens WH6]
 gi|311285182|gb|EFQ63757.1| acriflavin resistance protein [Pseudomonas fluorescens WH6]
          Length = 1033

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/583 (10%), Positives = 158/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGIIA-----YRLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + +TL F      +    +V   +   
Sbjct: 56  PDVMTSAVTAPLERQFGQMPGLTQMASTSSGGASVLTLRFNLDINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPKDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKIAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANGLNLSDVRTLIAASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN    + +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLVSPQQYAELILAYNNGAPLRLKDVAQIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +           V          S    
Sbjct: 275 ANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIALVVMVTFLFLRRVSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRYIEEGETPLAAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +                 D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKDEEQGRFYKASGAWIDWMI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +    L  + +I  L    + Y +  KG   + 
Sbjct: 515 EAYGRKLQWVLKHQPLTLLVAIATLGLTVVLYLVVPKGFFPVQ 557



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 68/162 (41%), Gaps = 9/162 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+ ++++R +    +     + L +  T G   L G   N   + A+    G+
Sbjct: 340 IAIALVVMVTFLFLR-RVSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRYIEEGETPLAAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           V+      FAI +A  I+++   S+ +   +   +     K+
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKD 496



 Score = 45.8 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +  +  I K+        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNQGLDPQTAIYKAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      +  +
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLGRRWRK 1023


>gi|294806817|ref|ZP_06765643.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides xylanisolvens SD CC 1b]
 gi|294445987|gb|EFG14628.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 1055

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 73/697 (10%), Positives = 174/697 (24%), Gaps = 55/697 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P               + +   
Sbjct: 4   KRPVMAISISVLILAIGLISLF-----TLPVEQYPDIAPPT-------------VYVTAS 45

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +      L   +        +   +       I + F      +  A  V 
Sbjct: 46  YTGADAEAVMNSVIMPLEESINGVEDMMYVSSSASNAGLAIIQVYFKQGTDPDMAAVNVQ 105

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 106 NRVAKAQGLLPAEVTKVGVSTMKRQTSFLQIGALVCTDGRYDQTFLANYLDINVIPQIKR 165

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 166 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDITAILGEQNIEAPTGSLGESSKNVF 224

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +                 +      
Sbjct: 225 Q----------------FTMKYRGRLKSVEEFRNTVVRSREDGSILRLQDVAEVELGTMT 268

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +          +    +     
Sbjct: 269 YSFRSEMDSQPAVLYMIFQTAGSNATAVNKEITTQIERMEKNLPEGTEFVTMMSSNDFLF 328

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 329 ASIHNVVETLIIAIILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 388

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 389 LFALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIVSCTCVFMAVFI 448

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL---- 528
            + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +      
Sbjct: 449 PVTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 508

Query: 529 ------SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                     L      + F     W V  S+  ++  +  L +      +  +    + 
Sbjct: 509 AAYNASFNAVLGKYKRGVMFFIRHRWMVWTSLAVAVALLVYLMSTTKTGLVPQEDQGVIM 568

Query: 583 VLANRPVDLS-VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
           V  +     +    + +       +           +       G   +   ++  +K  
Sbjct: 569 VNVSISPGSTLEETTKVMDRLENILKDTPEIEHYARVAGYGLISGQGTSYGTIIIRLKDW 628

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                   +            + +    +     + I
Sbjct: 629 SERKGKEHSSDAVVSRLNGQFQAIKEAQVFSFQPAMI 665



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 80/291 (27%), Gaps = 8/291 (2%)

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                    +         ++      Y +D +    + V     +        L+ +   
Sbjct: 746  YCGGAYISNYNQYGKVYRVMMQASPEYRLDEQALNNMFVRNGTQMAPVSQFVTLKQVLGP 805

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            + + +                  S    +V+E V  +                       
Sbjct: 806  ETANRFNLYSTITANVNPADGYSSGEVQKVIEEVAAQSLPAGYGYEYGGMAREEASSGGA 865

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 I  + I  I  LI   +   +      I ++   +  +  F  + G+E N+    
Sbjct: 866  QTVF-IYAICIFLIY-LILACLYESFLIPFAVIFSVPFGLMGSFLFAKILGLENNIYLQT 923

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ LIG      +++ +     ++     +   +    +    L   + T +     +L
Sbjct: 924  GVIMLIGLLAKTAILITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGML 980

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+      G +   S    +  G+ V   + +F+     +     + K  +
Sbjct: 981  PLMFSSGAGANGNSSLGTGVVGGMAVGTLALLFVVPVFYIIFEFLQEKIRK 1031



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 355 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKF 414

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 415 DAGYK--SPYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 472

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 473 GISMISALTLCPALCAIMMR 492


>gi|152986543|ref|YP_001348069.1| RND efflux transporter [Pseudomonas aeruginosa PA7]
 gi|150961701|gb|ABR83726.1| probable RND efflux transporter [Pseudomonas aeruginosa PA7]
          Length = 1043

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 63/515 (12%), Positives = 140/515 (27%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           +   P                    +     
Sbjct: 10  RPVATTLLMVAILLSGLIA-----YRFLPISALPEVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S     + ITL F+     +    +V   +   
Sbjct: 56  PEIMTSSITAPLENQLGQIPGLNEMSSSSSGGASVITLQFSLQSNLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     + +      + +L+   +        +    +  +   +I        
Sbjct: 116 QSLLPNDLPNQPVFSKVNPADAPILTLAVMSDG-MPLPQIQDLVDTRLAQKISQISGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +P+ L     +   +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRVRANPTALAAAGLSLEDLRSTVTSNNLNGPKGSFDGPTRASTLDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                           D+                ++      V     
Sbjct: 235 LRSA--------------------DAYRDLIIAYKNGSPLRIRDVASVEDDAENVRLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L++         V          S    
Sbjct: 275 ANNLPAVVLNIQRQPGANVIEVVDRIKALLPQLQSTLPGNLDVQVLTDRTTTIRASVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V F+ +      L+  F++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QFELALAVALVVMVTFLFLRNVYATLIPSFAVPLSLIGTFGVMYLSGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMVENIARYLEQGDSPLEAALKGSKQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FAIT+ ++ILIS F ++++   +   +
Sbjct: 455 VAGRLFREFAITLAVAILISGFVSLTLTPMLSAKL 489



 Score = 84.7 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 84/245 (34%), Gaps = 12/245 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           ++A +      +R         +             V L  Q         V++ +K  +
Sbjct: 245 IIAYKNGSPLRIRDVASVEDDAENVRLAAWANNLPAVVLNIQRQPGANVIEVVDRIKALL 304

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAI 697
            ++           V    +  +          + + ++ + M+ ++++R   Y  L   
Sbjct: 305 PQLQSTLPGNLDVQVLTDRTTTIRASVKDVQFELALAVALVVMVTFLFLR-NVYATLIPS 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + L +  T G   L G   N   + A+    G+ V+D +V+ + +    +      S 
Sbjct: 364 FAVPLSLIGTFGVMYLSGFSINNLTLMALTIATGFVVDDAIVMVENI---ARYLEQGDSP 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
            +   K   +     +  + +    ++P+   G   G +   FAI +A  I+++   S+ 
Sbjct: 421 LEAALKGSKQIGFTIISLTFSLIAVLIPLLFMGDVAGRLFREFAITLAVAILISGFVSLT 480

Query: 815 IAAPI 819
           +   +
Sbjct: 481 LTPML 485



 Score = 45.8 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
                      + I ++        + T+MAA +  LP+ + GG    +     I M  G+
Sbjct: 936  AERNEGKPPHEAIYQACLLRFRPILMTTMAALLGALPLMLAGGAGAELRQPLGITMVGGL 995

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +++   ++F    I L+      + A
Sbjct: 996  LLSQVLTLFTTPVIYLYFDRLARRWA 1021


>gi|302392599|ref|YP_003828419.1| acriflavin resistance protein [Acetohalobium arabaticum DSM 5501]
 gi|302204676|gb|ADL13354.1| acriflavin resistance protein [Acetohalobium arabaticum DSM 5501]
          Length = 1037

 Score =  157 bits (397), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 75/664 (11%), Positives = 185/664 (27%), Gaps = 45/664 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +D +P                           + +   +    +E  + +     
Sbjct: 29  FTRLSVDLYPDMTIPVV---------SVSTRYSGAAPEEIEESVTRPLEEGLATVDDIDS 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              + R+  +++TL F      +  A  V   +  +   L  +    ++      +I I+
Sbjct: 80  VSSTSRENLSQVTLEFDWGTDMDMAAVDVREQVSQIKEHLPDEADDPIVRKIDLDQIPIM 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   + D      +E          D++                 Q+    D  +L    
Sbjct: 140 IFGISSD--HRSGLELKEFAEDNIKDELEKIPGLASASIVSGENRQININVDRKKLEGYN 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +  +++      N +  G     R        +   E   +I  + +            
Sbjct: 198 LSINQVTAALHQENVNLPGGEITERPTEYLLRTEGQFESIEDIENVIITMRQQ------- 250

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                        +         I            +       A+ + ++  +    I+
Sbjct: 251 -------------KPITIKNVAEIEDGYKDRSVYVRVNERKTVGAMVTKQSGANTVEVID 297

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A      +R          +          S +  +    +     +I+LF+ +   + 
Sbjct: 298 RAKEKLDKIREDLPSDIYIDISRDQSKFIKKSIATVQQNVLVGGLFAVIILFLFLRSFRS 357

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK-N 445
             +   +I + V+    LL   G TL L ++ G+ LG+G+ VD++++V E I    R   
Sbjct: 358 TFIIGAAIPITVVAAFGLLYYSGYTLNLMTLGGLALGVGMLVDNSVVVLENIFRHLRHEG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFT 502
                +   G     + +F S +T L   + + F  G        F++T+  ++L S   
Sbjct: 418 ADPIRAAKQGSDEVGTAVFASTMTTLAVFIPISFVEGIARELFGPFSMTIAFALLASFII 477

Query: 503 AISIVRAMMIFIIRYKKMK---------SIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
           A++ V      ++ +  +K         ++                    R     + + 
Sbjct: 478 AVTFVPMSSARLLSFSNVKEDDAQEEKITVRAANKVLNIYRQILDWCLDHRKTVLAIAVI 537

Query: 554 ILFSICSICLLFTHGLNYGI-DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           +  +  ++                  I + +     ++ +   +      +  I      
Sbjct: 538 LFAASLALFPFIGKEFMPDSERDSFRIMIELPVGTGLETTNQEAKKIEKIVTQIPEVQVA 597

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                    +     S     ++ +V ++  E       ++     P I    IR     
Sbjct: 598 FNLVGDTGGKGSTSGSNEAMFMVRLVDEENRERSTSEIQESIRSKLPSIPGAEIRFAEAS 657

Query: 673 VIIS 676
           +I  
Sbjct: 658 MIGG 661



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 79/259 (30%), Gaps = 6/259 (2%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES-LQIGDISFQNFDGEKNFLVRLQ 622
           L T G    I+    + + +   +P+ +  V    +           N       +V  Q
Sbjct: 228 LRTEGQFESIEDIENVIITMRQQKPITIKNVAEIEDGYKDRSVYVRVNERKTVGAMVTKQ 287

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                     R  E + K   ++     I  +      I + +       ++    A++I
Sbjct: 288 SGANTVEVIDRAKEKLDKIREDLPSDIYIDISRDQSKFIKKSIATVQQNVLVGGLFAVII 347

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                  +         + + +    G     G   NL  +  +   +G  V++ VVV +
Sbjct: 348 LFLFLRSFRSTFIIGAAIPITVVAAFGLLYYSGYTLNLMTLGGLALGVGMLVDNSVVVLE 407

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPM 801
            + ++++             +  +E       ++M      +P++   G     F    M
Sbjct: 408 NIFRHLRHE--GADPIRAAKQGSDEVGTAVFASTMTTLAVFIPISFVEGIARELFGPFSM 465

Query: 802 AFGIVVAASSSIFIAAPIL 820
              I  A  +S  IA   +
Sbjct: 466 T--IAFALLASFIIAVTFV 482



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 86/236 (36%), Gaps = 7/236 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++  +   +   +    ++   V +    GD    + V ++  +  + I          
Sbjct: 789  NSVAKIVQTEGPTKVTREDQQRHVSIYSNLGDRDLGSVVADISDRVESNIELPPNYSIEY 848

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  +E  +   + + ++ + + + +  +F+        + TL L +   L    L 
Sbjct: 849  SGENEDMQETFKNLSMALAVAIVLVYMVLASQFESLLHPFTVMLTLPLTLIGVLAALFLT 908

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   + T++  V+ L G  VN+ +V+ D +     L    +  R+ I K+    L   + 
Sbjct: 909  GETISATSMIGVIMLAGIVVNNAIVLVDYIN---LLRDRGLRRREAILKAGPVRLRPVLM 965

Query: 775  TSMAA---FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            T++      I V      G   +    I +  G+  A   ++ +   + L +   +
Sbjct: 966  TALTTILGLIPVAAGWGSGSEGMAPMGIAVIGGLTTATFLTLLVIPTLYLSLEKIK 1021



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/535 (8%), Positives = 145/535 (27%), Gaps = 55/535 (10%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R     + +      + L   +               M +  +  GL          E  
Sbjct: 528  RKTVLAIAVILFAASLALFPFIGKEFMPDSERDSFRIMIELPVGTGL----------ETT 577

Query: 62   EDDF--VNGFLQMY--SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
              +   +   +          + +   G    +    +    +   D   +E    ++  
Sbjct: 578  NQEAKKIEKIVTQIPEVQVAFNLVGDTGGKGSTSGSNEAMFMVRLVDEENRERSTSEIQE 637

Query: 118  FLQGVNSKLNVD----PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
             ++     +        + +++      +  + +     D      +++   I  Q   +
Sbjct: 638  SIRSKLPSIPGAEIRFAEASMIGGGGGDDSPLSIKIFGGD------LDRLESIADQVKKE 691

Query: 174  IGISESTIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
            +   + T     S      ++  + D  R   L     K+        N +    +    
Sbjct: 692  VEKVKGTRDVHSSVDEGKPEIRVDVDRKRAADLGLGVNKIGKTVETYVNGRTATQYHGTE 751

Query: 233  LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
              D+   +  +          LN            P+  +                 +  
Sbjct: 752  DGDTVDIKVRLAKADRTKIQQLNSMKIMTSKGRFIPLNSV--------------AKIVQT 797

Query: 293  PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                 +        V   +    +   S    I         L                 
Sbjct: 798  EGPTKVTREDQQRHVSIYSNLGDRDLGSVVADISDRVESNIELPPNYSIEY--------- 848

Query: 353  GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV----ADFSIFLNVILTLALLSLL 408
              +           ++   + +++++M++      L+       ++ L +I  LA L L 
Sbjct: 849  SGENEDMQETFKNLSMALAVAIVLVYMVLASQFESLLHPFTVMLTLPLTLIGVLAALFLT 908

Query: 409  GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            G T++  S+ G+++  G+ V++ I++ + I     +      ++          +  + +
Sbjct: 909  GETISATSMIGVIMLAGIVVNNAIVLVDYINLLRDRGLRRREAILKAGPVRLRPVLMTAL 968

Query: 469  TALIATVVL---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            T ++  + +   +  G   +    I +   +  + F  + ++  + + + + K  
Sbjct: 969  TTILGLIPVAAGWGSGSEGMAPMGIAVIGGLTTATFLTLLVIPTLYLSLEKIKDF 1023


>gi|322831525|ref|YP_004211552.1| acriflavin resistance protein [Rahnella sp. Y9602]
 gi|321166726|gb|ADW72425.1| acriflavin resistance protein [Rahnella sp. Y9602]
          Length = 1066

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 60/539 (11%), Positives = 146/539 (27%), Gaps = 38/539 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G+               +P+                   +     
Sbjct: 10  RPVATILLMVAVLLSGIFAYNMLSTSALPQVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PDVMASGITAPLERQLGQMAGLSQMYSTSASGSSIITLKFSLDLSLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S L  D              + VL+            +    +  +   ++        
Sbjct: 116 DSLLPSDLPNPPTYKKVNPADAAVLT-LAATSESLPLTKVQDLVNTRVALKLSQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + DP +L     +   ++      N +     F       +      
Sbjct: 175 VTLAGGHQPAIRVQVDPRKLAAHNLSMETINTLIGNSNVNGSKGGFDGPHHSITIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                      ++  +              + +          
Sbjct: 235 LRTAAE--------------------YGNLIVNYENGAALRLRDVATLSEAAENQYLSAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++        L+          V          S S  
Sbjct: 275 ANKQPAIIISVQRQPGANVIQVVDAIKAQLPKLQEALPESVKISVISDRTQTIRASISDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      L+   ++ L+++ T  ++ L G +L   S+  + +
Sbjct: 335 QFELLLSIALVVMVTFLFLRNVAATLIPSVAVPLSLVGTFGVMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  +D  I+V E I     + ++   +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVIDDAIVVVENISRRLEEGETPMQAALKGSQQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
             G   R FAIT+ +SIL+SM  ++++   +  +++R+   +                I
Sbjct: 455 VVGRLFREFAITLAVSILVSMVVSLTLTPMLCAYLLRHTPEEKQSKFYRKGGEFFDKMI 513



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 96/285 (33%), Gaps = 15/285 (5%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI               N  ++++ G  L +     +  +     L +      +     
Sbjct: 226 SITIDANDQLRTAAEYGNLIVNYENGAALRLRDVATLSEAAENQYLSAWANKQPAIIISV 285

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             +     +Q          ++ E + + +   V     Q        +  EL+      
Sbjct: 286 QRQPGANVIQVVDAIKAQLPKLQEALPESVKISVISDRTQTIRASISDVQFELL------ 339

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+ ++++R      L     + L +  T G   L G   N  ++ A+    G+
Sbjct: 340 LSIALVVMVTFLFLR-NVAATLIPSVAVPLSLVGTFGVMYLCGFSLNNLSLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            ++D +VV + +    +      +      K   +     +  + +    ++P+   G  
Sbjct: 399 VIDDAIVVVENI---SRRLEEGETPMQAALKGSQQIGFTIISLTFSLIAVLIPLLFMGDV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW--RAKNAR 832
            G +   FAI +A  I+V+   S+ +   +  ++       K ++
Sbjct: 456 VGRLFREFAITLAVSILVSMVVSLTLTPMLCAYLLRHTPEEKQSK 500



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +   D  +  +  + +K  + +I    +I                  +  +
Sbjct: 836  NQFPAVTVSFNLKDGYSLEQAQQAIKTTVADIAMPDSITLRYQGAAASFESATGNTLWLI 895

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + M + + I ++ +   +  ++TL       L      G EF+L A+  V+ LIG 
Sbjct: 896  LAALLTMYVVLGILYESFIHPVTILSTLPSAAVGALLSLIFAGTEFSLIALIGVILLIGI 955

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D            +S R+ I ++        + T+MAA +  LP+ +    
Sbjct: 956  VKKNAIMMIDFALD--AENKQGLSPREAIHQACLLRFRPIMMTTMAALLGALPLMLASGS 1013

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G  +     + +  G++ +   ++F    I L       +
Sbjct: 1014 GAELRQPLGLVIVGGLIFSQVLTLFSTPVIYLMFDRLSHR 1053


>gi|289669984|ref|ZP_06491059.1| acriflavin resistance protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1082

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 59/564 (10%), Positives = 159/564 (28%), Gaps = 40/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +  +G+L        Q  +   P     + +                 
Sbjct: 9   RRPIATSLLMAGVLLLGIL-----GYRQLPVSALPEIDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R  +  +  V   ++ 
Sbjct: 55  NATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMERDIDIASQDVQAAIRQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 115 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDSLPLREINRYADAILAQRLSQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  +                      +        R        N+   +       
Sbjct: 232 QLTDAAQ--------------------YRETIISYKDGRPVRLADVANVVDGVENDQLAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   LR+         V          S   
Sbjct: 272 WADGKQAVLLEIRRQPGANIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRVSVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T  +++  G +L   S+  +V
Sbjct: 332 VKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ISM  ++++   M  ++++   +   +             +
Sbjct: 452 GVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERATAAGKRNL 511

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
             + +      +   +     ++ 
Sbjct: 512 WTRTVGTYERSLDWVLAHQPLTLA 535



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 92/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++ +      +      +   +        +    V L+ +     
Sbjct: 230 NDQLTDAAQYRETIISYKDGRPVRLADVANVVDGVENDQLAAWADGKQAVLLEIRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-----KGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I+ +  +I++
Sbjct: 290 NIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRVSVHEVKFTLVLTIALVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   +     + L +  T G  A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S  +  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 466 SIAVVISMLVSLTLTP 481



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 88/234 (37%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L   ++ +        ++   V + +      + ++ +  ++K    +   + +    
Sbjct: 823  AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKAREALKIPTQVHAQF 882

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +             +  ++ S + + I + + ++ +   L  I+TL       L    + 
Sbjct: 883  VGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMMC 942

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D     +       +  D I ++        + 
Sbjct: 943  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGANAHDAIRRACLLRFRPIMM 999

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA +  LP+A+    G  +     I +  G++++   +++    I L++  
Sbjct: 1000 TTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1053


>gi|91782913|ref|YP_558119.1| multidrug efflux system protein [Burkholderia xenovorans LB400]
 gi|91686867|gb|ABE30067.1| RND multidrug efflux pump, AcrB/AcrD/AcrF family [Burkholderia
           xenovorans LB400]
          Length = 1103

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/583 (12%), Positives = 155/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+         +  +   P                     L    
Sbjct: 10  RPVATTLLAVGIALAGIFA-----FTKLPVAPLPQVDFPTI---------SVQATLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +               +IT+ F  +R  +  A  V   +   
Sbjct: 56  PDTVATSVASPLERHLGSIADVTEMTSMSSVGSTRITMQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N          + +L    +      A +            +   +   +
Sbjct: 116 RADLPASLRSNPTYHKVNPADAPILI-LALTSKTLTAGQLYDSAATVLQQSLSQVDGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P+ L         +       N +           R        
Sbjct: 175 VDVSGSANPAVRVELEPNALSHYGIGLEDVRAALAAANANSPKGSIEFGPNRVQIYTNDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                      D+                 +   +  + +  +
Sbjct: 235 ASKASQ--------------------YKDLVIAYRNGAAVKLSDVAEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   TI+    +   L A                    S    
Sbjct: 275 FNGKRSVLVILYRQPGANIIDTIDRVTAMLPQLHASLPADVEIAPAADRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + +LG ++   S+  + +
Sbjct: 335 ERTLVIAVALVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYMLGFSIDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +  +G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGVPRMKAAFLGAREVGFTVLSISISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R    +  +             + 
Sbjct: 455 IVGRLFREFALTLSLAIGVSLIVSLTLTPMMCSRLLREPHEQKEEGRFGRWLERGFASMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +    L     +  +  +   Y I  KG     
Sbjct: 515 RGYERTLGWALLHPRLIVTILLLTIGLNVWLYIIVPKGFFPQQ 557



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 84/242 (34%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V LS V   ++S++               ++  +    + +     +  + 
Sbjct: 245 VIAYRNGAAVKLSDVAEVVDSVEDLRNLGLFNGKRSVLVILYRQPGANIIDTIDRVTAML 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            ++   +P               R  ++     ++I+   +++ +++  + W   L    
Sbjct: 305 PQLHASLPADVEIAPAADRSTTIRASLKDTERTLVIAVALVVMVVFLFLRNWRATLIPSV 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + I  T G   + G   +  ++ A+    G+ V+D +VV + +    +     +   
Sbjct: 365 AVPISIIGTFGAMYMLGFSIDNLSLMALTIATGFVVDDAIVVLENI---SRHIENGVPRM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
                   E     +  S++     LP+ + GG V      FA+ ++  I V+   S+ +
Sbjct: 422 KAAFLGAREVGFTVLSISISLVAVFLPILLMGGIVGRLFREFALTLSLAIGVSLIVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 TP 483



 Score = 43.1 bits (99), Expect = 0.22,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 95/238 (39%), Gaps = 7/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S   G          +     + +     V+ +   + +   + +I    TI  + 
Sbjct: 855  SAIASFGPGSTPLSVNHQSQFVASTISFNLPPGVSLSTATQAIYDTMAQIGMPGTIHGSF 914

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++ +    + ++ +  A+ I + + ++ +   L  ++TL       L    LF
Sbjct: 915  QGTAQAFQQSMSDQPILILAALAAVYIVLGMLYESYIHPLTILSTLPSAGVGALLALLLF 974

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              EF++ A+  V+ LIG    + +++ D   +  +     +S RD I ++        + 
Sbjct: 975  KTEFSIIALIGVILLIGIVKKNAIMMVDFAIEASR---HGLSSRDAIFQACLLRFRPIMM 1031

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+ AA +  LP+A     G  +     I +  G++V+   +++    + L++   R +
Sbjct: 1032 TTCAALLGALPLAFGRGEGAELRAPLGIAIVGGLIVSQMLTLYTTPVVYLYMDRIRVR 1089


>gi|82701980|ref|YP_411546.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrosospira multiformis ATCC
           25196]
 gi|82410045|gb|ABB74154.1| Hydrophobe/amphiphile efflux-1 HAE1 [Nitrosospira multiformis ATCC
           25196]
          Length = 1074

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 66/685 (9%), Positives = 175/685 (25%), Gaps = 48/685 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +      +    + ++P   P               + +    
Sbjct: 10  RPVFASVLSIIITLAGGVA-----MYNLPVAQYPEITP-------------VEVSVTATY 51

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                    Q  +  +   +        +   S       +++ F           +V  
Sbjct: 52  PGATAEVAAQNVAAPIEQQVNGADKLMYMTSASSSTGAMTLSVYFEIDANPSLAQVEVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L    ++  +    +    +++            +  +       +D I   
Sbjct: 112 RVSLALPQLPAAVQRQGVAVKKQSASVMMVISVFSPDERYEPVYVANYASIFILDAIKRI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +     P ++  L  T   +       N        G        
Sbjct: 172 PGAGQATVMGTPDYAMRIWLKPDQMAALGITAGDVQQAVAAQNEQYAVGSIGQAPTDRPV 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              + +  K  ++                   + I     G                 + 
Sbjct: 232 EQSFAITTKSRLT------------TPAEFDNIIIRAASQGVAMVRLKDVGYAELGQKIY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +   +   +     +        ++    P     +          
Sbjct: 280 AVRNTRQGKPATVLVVYQQPGANALEVSKGVRATLEEMKKSFPPGIEYEITMDTTAFTRA 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ ++VI   + ++ LG +L + ++
Sbjct: 340 SIVSVIQTFFEALVLVVVVVFVFLQNLRATLIPIIAVPISVIGAASGMAALGFSLNMLTL 399

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSR---AYSTIFDSNITALIA 473
            G++L IG+ VD  I+V E +     +   S   +          A   I        + 
Sbjct: 400 FGMILTIGIVVDDAIVVVEAVEHNMSKYGLSARDAAKKAMDEVGGALIAIVLVLCAVFVP 459

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              +    G   + FAIT+ +S+ +S   A+++  A+   +++ +  +            
Sbjct: 460 VGFIPGITGQLYKQFAITIAISVALSGIVALTLSPALAALLLKPRHGEKRGFFKWFDT-- 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   F R     +    L     I  L        +       +      P D  V
Sbjct: 518 -------WFERMTEGYIRSVQLAIKRYIVALLLFFGMIALAVGLFKHIPGSFLPPEDQGV 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   +       +              +++    S+       ++  ++        +  
Sbjct: 571 LLGAVLMPDASGLDRTGEVSRHATEYFMKHPATRSIVVVDGFSLLDGQMKSNASTFFVGL 630

Query: 654 TEIVGPKISRELIRKGIVGVIISAI 678
            +            +G+  ++  A+
Sbjct: 631 KDFEERYAGDNADTQGVPALLAGAV 655



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 62/154 (40%), Gaps = 7/154 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
              ++  +   I + + +  +++ W   LG +T +   +   L    L G+  ++     +
Sbjct: 875  SSVLVFVFGLIMVFLILAAQYEKWTLPLGVLTAVPFALFGALVAIFLRGLSNDIYFQIGL 934

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
              L+  S  + +++++     +  +    SF D    +  + L   + TS+A  +  +P+
Sbjct: 935  TILVALSAKNAILIFE---YAVMNHGQGQSFYDAAVNAARDRLRPIIMTSLAFTLGCVPL 991

Query: 787  AVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
            A+  G       S    +  G++ A   +IF   
Sbjct: 992  AIATGVSANSKISLGTGVVGGMLGATVIAIFFIP 1025


>gi|218710148|ref|YP_002417769.1| ACR_tran, AcrB/AcrD/AcrF membrane proteins family [Vibrio
           splendidus LGP32]
 gi|218323167|emb|CAV19344.1| ACR_tran, AcrB/AcrD/AcrF membrane proteins family [Vibrio
           splendidus LGP32]
          Length = 1037

 Score =  157 bits (396), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 64/626 (10%), Positives = 169/626 (26%), Gaps = 35/626 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +   P                      E      +   +    ++  S +     
Sbjct: 29  FNKLAVREMPDIESPVV---------SISTRYEGASATIIESQITSNLEDQLSGISGIDE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              + R   ++IT++F            V   +      L  +    ++        + V
Sbjct: 80  IESTTRNGSSRITITFELGYDLNTGVSDVRDAVARAQRSLPDEADDPIVYKNNGSGEASV 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               +  +      + +    R  ID+  +         S  +   +  +  P+ +    
Sbjct: 140 YINLSSTE--MDRTQLTDYTERVLIDRFSLISGVSSVDISGGLYKVMYVKLKPALMAGRG 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T + ++      N    G                     V    I ++  TA    +  
Sbjct: 198 VTASDITQALRNENIESPGGE-------------------VRNDAIVMSVRTARSYTEAK 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +          +     ++                V        ++  +     +
Sbjct: 239 DFEYLVVKRASDNTPIYLKDVADVYIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVAD 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   ++          V+  +      S S    T  I  GLV++VL++ +   + 
Sbjct: 299 LVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVYSTLFITGGLVILVLYVFIGQARA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ +++I +       G ++ L ++  ++L IGL VD  I+V E I     + +
Sbjct: 359 TLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGE 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTA 503
           S   +   G       +  + +  ++  + + F  G        F++ + +S++ S   A
Sbjct: 419 SPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSVIA 478

Query: 504 ISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
           +++   +   I++     +            L     ++      +      I+ +    
Sbjct: 479 LTLTPVLGSKILKANVKPNRFNQFVERVFGKLEAGYKSVLRRALNWRWAAPIIIIACMGG 538

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                  +   +  +    +     R  D +       ++ I +       G+       
Sbjct: 539 SYGLMQQVPSQLTPQEDRGVIFAFVRGADATSYNRMSANMDIVEERLMPLLGQGFLKSFS 598

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVP 647
              P            V   + +   
Sbjct: 599 IQSPAFGGNAGDQTGFVIMILEDWDE 624



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 92/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++         + K    L V          ++   +     +     F  +  
Sbjct: 219 VRNDAIVMSVRTARSYTEAKDFEYLVVKRASDNTPIYLKDVADVYIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V ++V K++  I           V    +  + R        +
Sbjct: 279 VNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++Y++I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYVFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSVIALTLTPVLGSKILKANVKPNR 498



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 673  VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF---ALFGIEFNLTAVAAVLTL 729
            V+ +   ++ Y+ +  ++   +  +  +        G F    L     N+ +   ++ L
Sbjct: 855  VVFALAMLVAYLVLAAQFESFINPLVVMFTVPMGIFGGFLGLVLMSQGLNVYSQIGMIML 914

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ +      +L    I F   I  +    L   + T+       +P+   
Sbjct: 915  IGMVTKNGILIVEFAN---QLRDRGIEFEKAIIDASARRLRPIMMTAFTTLAGAIPLITS 971

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    + FG+  A   ++F+   +   I        
Sbjct: 972  TGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRLISGSTRSPG 1016


>gi|82543449|ref|YP_407396.1| multidrug efflux system subunit MdtB [Shigella boydii Sb227]
 gi|123560069|sp|Q323E0|MDTB_SHIBS RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|81244860|gb|ABB65568.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320183714|gb|EFW58552.1| Multidrug transporter MdtB [Shigella flexneri CDC 796-83]
 gi|332097054|gb|EGJ02037.1| multidrug resistance protein mdtB [Shigella boydii 3594-74]
          Length = 1040

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLIFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 57/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +    +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLIFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|295085848|emb|CBK67371.1| The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile
           Efflux-1 (HAE1) Family [Bacteroides xylanisolvens XB1A]
          Length = 1059

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 74/697 (10%), Positives = 174/697 (24%), Gaps = 55/697 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P               + +   
Sbjct: 8   KRPVMAISISVLILAIGLISLF-----TLPVEQYPDIAPPT-------------VYVTAS 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +      L   +        I   +       I + F      +  A  V 
Sbjct: 50  YTGADAEAVMNSVIMPLEESINGVEDMMYISSSASNAGLAIIQVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 110 NRVAKAQGLLPAEVTKVGVSTMKRQTSFLQIGALVCTDGRYDQTFLANYLDINVIPQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDITAILGEQNIEAPTGALGESSKNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +                 +      
Sbjct: 229 Q----------------FTMKYRGRLKSVEEFQNTVVRSREDGSILRLQDVAEVELGTMT 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +          +    +     
Sbjct: 273 YSFRSEMDSQPAVLYMIFQTAGSNATAVNKEITTQIERMEKNLPEGTEFVTMMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 333 ASIHNVVETLIIAIILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIVVVEAVQSKFDAGYKSPYLATKDAMGDVTMAIVSCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL---- 528
            + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +      
Sbjct: 453 PVTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 529 ------SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                     L      + F     W V  S+  ++  +  L +      +  +    + 
Sbjct: 513 AAYNASFNAVLGKYKRGVMFFIRHRWMVWTSLAVAVALLVYLMSTTKTGLVPQEDQGVIM 572

Query: 583 VLANRPVDLS-VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
           V  +     +    + +       +           +       G   +   ++  +K  
Sbjct: 573 VNVSISPGSTLEETTKVMDRLENILKDTPEIEHYARVAGYGLISGQGTSYGTIIIRLKDW 632

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                   +            + +    +     + I
Sbjct: 633 SERKGKEHSSDAVVSRLNGQFQAIKEAQVFSFQPAMI 669



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 80/291 (27%), Gaps = 8/291 (2%)

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                    +         ++      Y +D +    + V     +        L+ +   
Sbjct: 750  YCGGAYISNYNQYGKVYRVMMQASPEYRLDEQALNNMFVRNGTQMAPVSQFVTLKQVLGP 809

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            + + +                  S    +V+E V  +                       
Sbjct: 810  ETANRFNLYSTITANVNPADGYSSGEVQKVIEEVAAQSLPAGYGYEYGGMAREEASSGGA 869

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 I  + I  I  LI   +   +      I ++   +  +  F  + G+E N+    
Sbjct: 870  QTVF-IYAICIFLIY-LILACLYESFLIPFAVIFSVPFGLMGSFLFAKILGLENNIYLQT 927

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ LIG      +++ +     ++     +   +    +    L   + T +     +L
Sbjct: 928  GVIMLIGLLAKTAILITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGML 984

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+      G +   S    +  G+ V   + +F+     +     + K  +
Sbjct: 985  PLMFSSGAGANGNSSLGTGVVGGMAVGTLALLFVVPVFYIIFEFLQEKIRK 1035



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 359 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 419 DAGYK--SPYLATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496


>gi|306836237|ref|ZP_07469220.1| protein-export membrane protein SecD [Corynebacterium accolens ATCC
           49726]
 gi|304567891|gb|EFM43473.1| protein-export membrane protein SecD [Corynebacterium accolens ATCC
           49726]
          Length = 627

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 112/579 (19%), Positives = 209/579 (36%), Gaps = 63/579 (10%)

Query: 1   MRNNP--W-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           M+N+   W    L      + ++ AL  F                   LG+DL+GG+ + 
Sbjct: 1   MKNSNRQWPKRALALFGLIVVVIYALVFFTGNRQAAP----------KLGIDLQGGTRVT 50

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR--FKENIADKV 115
           L    +D     L+   + L   +   G+    +    N + ++         + +    
Sbjct: 51  LAPQGEDPTQDQLRQARNILEQRVNGMGVSGSEVVINGNTLVITVPGEDASQAQAVGQTS 110

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
            L+ + V      D +K            +     + D+      + +  + +Q     G
Sbjct: 111 QLYFRPVAQPSAPDLEKLDKELEDMANRWVKYGVLDKDEANKKLEDVTNAVAQQEAQAEG 170

Query: 176 I---------------SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA----KMSFHK 216
                            E +     + R            +        A          
Sbjct: 171 KEPKDVKAPKVSAKPLDEPSNSIEQTERRDEVTEMLLKDRQSADPTTQAAASSLLTCQGS 230

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT------------------ 258
             P                  G  Y++E    +SGI     T                  
Sbjct: 231 ADPLAGADDPSKPFVTCDYDSGTPYVLEPAPLLSGIEDEDGTRLTGNEIDTNSPINGGLN 290

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP-SGKA 317
                              G++ + ++TR+++   +A+ LD  V++APVI  A P     
Sbjct: 291 PQSGQMEISFSFKTGNGPNGSQTWADLTREHLNDQIAITLDSAVISAPVIQGATPYGSAT 350

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKL------NIVEERNVGADLGSDSIYKGTCAIVAG 371
            I+G+F+ E A  LA  LR G+LP+              ++   LG  ++  G  A +AG
Sbjct: 351 SINGDFSQEEANNLANNLRYGALPLSFAGENGEPGGTVESIPPTLGKAALEAGLWAGLAG 410

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLA 427
           L+L++L+ +  +     V+   +  + +LT   + LL    G +L L  IAG+V+G+G  
Sbjct: 411 LILVILYSLYYFRALSGVSVIFLLGSGLLTYGAIVLLGRWIGYSLDLSGIAGLVIGVGAT 470

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
            DS ++  ERI++E  + ++   +    + R+ STI   N   LI +V+++F   G V+G
Sbjct: 471 ADSFVVYYERIKDELLEGRTFRSATQKAWERSRSTIVTGNAVTLIGSVIVYFLAIGEVKG 530

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           FA T+GL+ +  +  +  ++  +M  I R        +N
Sbjct: 531 FAFTLGLTTIFDLVVSFLVMAPLMQIIGRRPAAAKPSMN 569



 Score =  114 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 76/241 (31%), Gaps = 8/241 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D   +  +   +    I      G    +     Q   +     +               
Sbjct: 324 DQIAITLDSAVISAPVIQGATPYGSATSINGDFSQEEANNLANNLRYGALPLSFAGENGE 383

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                E + P + +  +  G+   +   I +++Y    F+    +  I  L+     T G
Sbjct: 384 PGGTVESIPPTLGKAALEAGLWAGLAGLILVILYSLYYFRALSGVSVIF-LLGSGLLTYG 442

Query: 710 FFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L G       +L+ +A ++  +G + +  VV Y+R++  +       +FR    K+ 
Sbjct: 443 AIVLLGRWIGYSLDLSGIAGLVIGVGATADSFVVYYERIKDELLE---GRTFRSATQKAW 499

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +    V  +    I  + +       +  FA  +    +     S  + AP++  I  
Sbjct: 500 ERSRSTIVTGNAVTLIGSVIVYFLAIGEVKGFAFTLGLTTIFDLVVSFLVMAPLMQIIGR 559

Query: 826 W 826
            
Sbjct: 560 R 560


>gi|323260681|gb|EGA44287.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 859

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|167737923|ref|ZP_02410697.1| multidrug resistance protein MdtC [Burkholderia pseudomallei 14]
          Length = 1068

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 159/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL   +   +       FP+ +                  L    
Sbjct: 10  RPVATTLLALGIALAGLFAFVKLPVSPLPQVDFPTIL--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVAEMTSMSSVGNARIVLQFNLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPASLKSNPTYRKVNPADSPIMV-VSLTSKTASPAKLYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VSLSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +G H      N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEAGPHRYQLYTNDQATKAAQYKDLVIAYRNHAAVSLSDVSSVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        I       +   TIE        L A                    S +  
Sbjct: 275 MNGERAVLVILYRSPGANIIDTIERVKAALPQLTAALPADIQVTPVLDRSRTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG +L   S+  +++
Sbjct: 335 EHTLIIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++        +           + + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLVVSLTLTPMMCARLLPEAHAPRDEGRVARWLERGFEWMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +       +  +  +  +   Y +  KG     
Sbjct: 515 RGYERTLSWALRHPFTILMTLVATIALNIALYIVVPKGFFPQQ 557



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +S + M++++++R  W   L     + + I  T G   L G   N  ++ A++   
Sbjct: 338 LIIAVSLVVMVVFLFLR-NWRATLIPSVAVPISIVGTFGAMYLLGFSLNNLSLMALIVAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +                 E     +  S++     LP+ + G
Sbjct: 397 GFVVDDAIVVLENI---ARHIENGTPRLQAAFDGAREVGFTVLSISLSLVAVFLPILLMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G V      FA+ ++  I V+   S+ +  
Sbjct: 454 GIVGRLFREFALTLSLAIAVSLVVSLTLTP 483



 Score = 38.1 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 37/202 (18%), Positives = 88/202 (43%), Gaps = 7/202 (3%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + E+    TIQ +     +  +E ++   + ++ +
Sbjct: 869  VATTISFNLPPGVSLSKATQVIYQTMAEVGVPPTIQGSFQGTAQAFQESLKDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LAAVYIVLGILYESYIHPVTILSTLPSAGVGALLGLLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D     +       S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFA---IDASRQGKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGRGDGAE 1045

Query: 793  VIGSFAIPMAFGIVVAASSSIF 814
            +     I +A G++V+   +++
Sbjct: 1046 MRAPLGIAIAGGLIVSQMLTLY 1067


>gi|307322205|ref|ZP_07601575.1| acriflavin resistance protein [Sinorhizobium meliloti AK83]
 gi|306892158|gb|EFN22974.1| acriflavin resistance protein [Sinorhizobium meliloti AK83]
          Length = 1065

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 72/631 (11%), Positives = 179/631 (28%), Gaps = 52/631 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  MI  +GL         +  +D +P       +                   
Sbjct: 11  PVFATMMMVMILVLGLFS-----YGRLGVDHYPETDLPVVV---------VATTYTGASP 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    +   + +           + ++ + + F      ++ A +V   +  + 
Sbjct: 57  ESVESEISRPIEAALNTIGGIDTITSESYEGRSIVVVQFEVDVDSQDAAQEVRDRVARLE 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +K         +     +  +I+    +         E +    R   +++ +     Q 
Sbjct: 117 TKFPDGVATPQVTRYKPEGQAILSVAVSST--SRTLPEITTLATRVINNRLSVISGVGQV 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   Q+    DP RL       + +                         G     
Sbjct: 175 SLIGSSERQVLVVVDPDRLGAYGLAVSTVIEAIR--------------------GENQDR 214

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                ISGI+    T             I   +      +      I    A V      
Sbjct: 215 AAGTLISGINQRIVTVEGRIANTSGFNRIIVAQRNGYPVYLSEVATILDTGAEVTSLANY 274

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN-IVEERNVGADLGSDSIY 362
                           +            + L A      +   +   N        S  
Sbjct: 275 QGQTTLGLHIVKVQGANTVEVASAVRREVSALNAELTKDNVQLTITRDNSRPIASQVSQV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      L ++++F+ +   +  ++   ++ ++VI T A +  LG TL + ++  + L
Sbjct: 335 QRTLVEGGVLSVLIVFIFLNSWRSTVITGLTLPISVIGTFAAIYALGFTLNIMTLMALSL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+ +D  I+V E I    +  +    +   G +     +  + +  +   + + F GG
Sbjct: 395 SIGILIDDAIVVRENITRHLQMGKDPVRAALDGTNEIGLAVLSTTLCIVAVFLPVAFMGG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
              R    F +T+ ++++IS+F + ++   +       +  K+       +     D   
Sbjct: 455 LIGRFFLQFGVTVAVAVVISLFVSFTLDPMLSSIWCDPQSQKTAKRGFFGQLIERFDQWF 514

Query: 539 -----------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                         F   +     +  +F +  + +            +G + + + AN 
Sbjct: 515 EGLASRYRSVIYFTFDYRKTTIAIVLGMFVVSLLLVPRIGTEFLPPPDQGEVSISLEANE 574

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              L  + + +  ++     F       + +
Sbjct: 575 GASLDYMAAKVGQIERALREFNYVSSTYSTI 605



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 89/285 (31%), Gaps = 18/285 (6%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           I+     I               G           +D     ++L + Q       +   
Sbjct: 227 IVTVEGRIANTSGFNRIIVAQRNGYPVYLSEVATILDTGAEVTSLANYQGQTTLGLHIVK 286

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +                    E+ K  +   +     +       ++ R L+  G++ V
Sbjct: 287 VQGANTVEVASAVRREVSALNAELTKDNVQLTITRDNSRPIASQVSQVQRTLVEGGVLSV 346

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           +I  I +         W   +    TL + +  T       G   N+  + A+   IG  
Sbjct: 347 LIVFIFLN-------SWRSTVITGLTLPISVIGTFAAIYALGFTLNIMTLMALSLSIGIL 399

Query: 734 VNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           ++D +VV    R+N+  +               NE     + T++      LP+A  GG 
Sbjct: 400 IDDAIVV----RENITRHLQMGKDPVRAALDGTNEIGLAVLSTTLCIVAVFLPVAFMGGL 455

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPIL--LFIYDWRAKNAR 832
           +      F + +A  +V++   S F   P+L  ++      K A+
Sbjct: 456 IGRFFLQFGVTVAVAVVISLFVS-FTLDPMLSSIWCDPQSQKTAK 499



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 85/261 (32%), Gaps = 18/261 (6%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +   R  D       L       +            +    +   ++    + ++V    
Sbjct: 774  IATARMDDNGKPIMVLLDQVADVVESTAPAQITRKDLSRDIRISSNIEGRTLGDVVADLK 833

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAIT 698
              +  +       I     +  L       +  ++   + IYI +      +   +  I 
Sbjct: 834  AAMTKMDIPVGFRISFGGDAENLTESTAYALQSLAMAVIFIYIILASQFGSFIQPIAIIM 893

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLYTTS 754
            T+ L +   L      G   N+ ++  ++ L+G    + +++ D     +R+        
Sbjct: 894  TMPLSLMGVLLGLLFTGSTLNMFSMIGIMMLMGLVTKNAILLVDYSNLGVRE-------G 946

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
             S R  +  +    L   V T++A    +LP A+    GG+     A  +  G++ +   
Sbjct: 947  KSLRQSLADAGAVRLRPIVMTTLAMIFGMLPTALGLGEGGAQRAPMAHAIIGGLISSTLL 1006

Query: 812  SIFIAAPILLFIYDWRAKNAR 832
            S+     +L ++  +  +  R
Sbjct: 1007 SLVFVPVVLTYLDAFAGRVRR 1027


>gi|270264666|ref|ZP_06192931.1| multidrug resistance protein MdtB [Serratia odorifera 4Rx13]
 gi|270041349|gb|EFA14448.1| multidrug resistance protein MdtB [Serratia odorifera 4Rx13]
          Length = 1038

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/610 (10%), Positives = 165/610 (27%), Gaps = 45/610 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 18  RPVATTLLMVAILLAGII-----GYRSLPVSALPEVDYPTIQ---------VVTLYPGAS 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F      +    +V   +   
Sbjct: 64  PDVVTSAITAPLERQFGQMSGLKQMASQSSGGASVVTLQFQLELPLDVAEQEVQAAINSA 123

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 124 TNLLPSDLPYPPIYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQVTGVGL 182

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            + S      +  + + + +      +  +                G   +  + G+   
Sbjct: 183 VILSGGQRPAVRVKLNAAAVAAYGLDSETIRTAI------------GNANVNSAKGSLDG 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V +S      +  ++          +                 I +          
Sbjct: 231 PTRSVTLSANDQMKSADDYRQ--------LIVAYQNGAAIRLQDIATIEQGAENTRLAAW 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           V          S +  
Sbjct: 283 ANKQPAIVLNIQRQPGVNVITTADSIREMLPQLIKSLPKSVDVKVLTDRTTTIRASVNDV 342

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 343 QFELLLAVALVVMVIYVFLRNVPATIIPSVAVPLSLVGTFAAMYFLGFSINNLTLMALTI 402

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 403 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLVAVLIPLLFMGD 462

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID-------INPLSRFF 532
             G   R FA+T+ ++ILIS   ++++   M   ++ ++ ++  +               
Sbjct: 463 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSAASERFFDRVIA 522

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                + I                ++  +  L      + +   G IQ  V A + V  S
Sbjct: 523 QYGKWLKIVLNHPWLTLGVALSTLALTVLLYLLIPKGFFPLQDNGIIQGTVEAPQTVSFS 582

Query: 593 VVRSNLESLQ 602
            +    + + 
Sbjct: 583 NMAERQQQVA 592



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 89/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S               + ++ G  + +     ++     + L +      +   
Sbjct: 232 TRSVTLSANDQMKSADDYRQLIVAYQNGAAIRLQDIATIEQGAENTRLAAWANKQPAIVL 291

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +           ++++ + K +   V              +  EL+    
Sbjct: 292 NIQRQPGVNVITTADSIREMLPQLIKSLPKSVDVKVLTDRTTTIRASVNDVQFELL---- 347

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + ++ + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 348 --LAVALVVMVIYVFLR-NVPATIIPSVAVPLSLVGTFAAMYFLGFSINNLTLMALTIAT 404

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 405 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLVAVLIPLLFMG 461

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 462 DIVGRLFREFAVTLAVAILISAVVSLTLTP 491


>gi|301511918|ref|ZP_07237155.1| cation/multidrug efflux pump [Acinetobacter baumannii AB058]
          Length = 413

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 53/438 (12%), Positives = 128/438 (29%), Gaps = 37/438 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   +        ++R+P   P               + +  +
Sbjct: 8   QRPIFANVLAIIVMAFGIFSVM-----NLPVERYPDIAPPK-------------ITVSAN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S     ++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSSSDSSGSSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVIGLYDSTGKTGNIELSDYLTTHVVDNLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGETDVFGSQ-YAMRIWLNPDKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKSNKTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLVEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILV 434
           +  +VL IGL VD  I+V
Sbjct: 396 LFALVLAIGLLVDDAIVV 413



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVV 413


>gi|188581701|ref|YP_001925146.1| acriflavin resistance protein [Methylobacterium populi BJ001]
 gi|179345199|gb|ACB80611.1| acriflavin resistance protein [Methylobacterium populi BJ001]
          Length = 1104

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/516 (12%), Positives = 146/516 (28%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +   GL         +  +   P       +             +   
Sbjct: 9   RRPVATTLLTVGLMLAGLFA-----YVRLPVAPLPQVDFPVIL---------VQAQMAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +      +I L F  +R  +  A  V   +  
Sbjct: 55  SPETMATTVAAPLERRLGAIADVNEMTSTSSTGTVRIVLLFGLNRDIDGAARDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    + N          S +L    +        +           ++   E   
Sbjct: 115 ARADLPTALRTNPTYRKFNPADSPILI-LGLTSDTLTPGQLYDSAATIVQQRMSQVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   L  +  E DP+ L         +       N +                   
Sbjct: 174 NVDIGGSSLPAVRVELDPTALFHYGIGLEGIRAGLASANANSP----------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++G       AN   +      DI                 +   +    +  
Sbjct: 217 ---KGDIVAGDRRYQLYANDQGRQASDYRDIVVAYRNGAAVRLADVGEVVDSVEDKRNLG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++            +   +   T+E        ++A         +          S + 
Sbjct: 274 LVDGKPGVILFIYKQPGSNVVETVERVRAAIPQVQAALPGDIDLAISGDRSATIRASLAS 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+ V ++ +   +  L+   ++ +++I T A + LL  +L + S+  ++
Sbjct: 334 TEETLIIAVILVVFVTYIFLRSWRATLIPAVAVPISIIGTFAAMWLLDYSLDILSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I+      +    +  +G      T+   +++ +   + +   G
Sbjct: 394 IATGFVVDDAIVVLENIQRHIEAGKPRVEAALLGAREVGFTVVSMSLSLIAVFLPILLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R FA+T+ ++IL+S+  +++    M   +
Sbjct: 454 GIVGRLFREFAVTLSMAILVSLVLSLTTTPMMCALL 489



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/209 (14%), Positives = 69/209 (33%), Gaps = 7/209 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +  Q          RV   + +    +     +  +      I   L       +I   
Sbjct: 284 FIYKQPGSNVVETVERVRAAIPQVQAALPGDIDLAISGDRSATIRASLASTEETLIIAVI 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + + +       W   L     + + I  T     L     ++ ++ A++   G+ V+D 
Sbjct: 344 LVVFVTYIFLRSWRATLIPAVAVPISIIGTFAAMWLLDYSLDILSLMALIIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +         +       E     V  S++     LP+ + GG V    
Sbjct: 404 IVVLENI---QRHIEAGKPRVEAALLGAREVGFTVVSMSLSLIAVFLPILLMGGIVGRLF 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             FA+ ++  I+V+   S+    P++  +
Sbjct: 461 REFAVTLSMAILVSLVLSL-TTTPMMCAL 488



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +GAI  L+             G EF + A+ AV  LIG    + +++ D         
Sbjct: 963  AGIGAIVALLS-----------TGTEFTIIALIAVFLLIGIVKKNAILMID--FAIDAER 1009

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVA 808
               ++  + I ++        + T++AA +   P+ + GG    +     I +  G++V+
Sbjct: 1010 RRGLTPAEAIHEACLLRFRPIMMTTLAALLGAAPLIIAGGEGAELRRPLGIAIVGGLIVS 1069

Query: 809  ASSSIFIAAPILLFIYDWR 827
               +++    + L++   R
Sbjct: 1070 QILTLYTTPVVYLYLDRLR 1088


>gi|300717529|ref|YP_003742332.1| multidrug resistance protein [Erwinia billingiae Eb661]
 gi|299063365|emb|CAX60485.1| Multidrug resistance protein [Erwinia billingiae Eb661]
          Length = 1039

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 61/557 (10%), Positives = 150/557 (26%), Gaps = 38/557 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGIL-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTTTSMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   L  L   +  +       N +                    
Sbjct: 184 VTLAGGQRPAVRVKLNAQALAALNLDSETVRTAIANANVNSAKGSLDGP----------- 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            E  + +S      +  ++          +                 + +       G  
Sbjct: 233 -ERSITLSANDQMKSAEDYRQ--------LIVAYQNGSAVRLRDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L A         V          S    
Sbjct: 284 ANRQPAIVLNIQRQPGANIITTADSIRQMLPSLTASLPKSVEVKVLTDRTTNIRASVHDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  LG ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVIYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPMAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ +SILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAVTLAISILISAVVSLTLTPMMCARMLSVESLRKQNRFSRASEAMFDRIIA 523

Query: 540 IQFMRARFWGVGISILF 556
                 R       I  
Sbjct: 524 GYGHFLRRVLNHPWITL 540



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NVPATIIPAVAVPLSLVGTFAVIYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPMAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAISILISAVVSLTLTP 492


>gi|168703096|ref|ZP_02735373.1| RND family efflux transporter [Gemmata obscuriglobus UQM 2246]
          Length = 1117

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 52/519 (10%), Positives = 152/519 (29%), Gaps = 36/519 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L      +G+         +  ++ FP+      +             L   
Sbjct: 9   RRPVFTTMLVLGPVVLGMAS-----YGRLGVELFPNVDVPVVVVT---------TTLRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  + +        + ++  + + + F   R  +  A  V   +  
Sbjct: 55  GVEEMESSVTRPVEEAVNTVSGIDELRSTTKEGVSSVVIGFKLERNGDIAAQDVRDRIST 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L       ++         + ++            E +    +Q  + +       
Sbjct: 115 LLPRLPYGTDAPVVEKFNLDAAPV-VTVVVSGGPGRKLREVTEIAKKQIKEDLEGVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLL--GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +        +     P RLR L    +   +       N    G              
Sbjct: 174 SVVLVGGEQRAVNVTLRPERLRALSPPLSPEDVRRALAAQNIELPGGKVDGGAQERGLRV 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              ++   +   + +                  + +             ++   +     
Sbjct: 234 VGRIQTPADFENVIIETR---------------TDENGLKYAVRVKDVADVTDDIEEPRG 278

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L   V    +   ++  +     +      A +++G        +         GS 
Sbjct: 279 KSRLDGNVAVSLVIQKQSGGNTVAVADRVKERLAKIQSGLPADIKTEIIRDQSKFIKGSI 338

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K    + A LV+  +F+ +   +  L+A  ++  +++ T A + ++G +L   ++ G
Sbjct: 339 EEVKFHLVLAAVLVIATIFIFLRDWRATLIAATAVPTSIVGTFAFMDVMGFSLNNMTLLG 398

Query: 420 IVLGIGLAVDSNILVNER-IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ +D  ++V E   R       S + +           +  + ++ ++    + 
Sbjct: 399 LILAVGIVIDDAVVVLENVFRYTEEYGLSGWDAASKATKEIALAVVATTLSLVVIFAPIA 458

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           F  G        F   +  +I++SM  + ++   +   +
Sbjct: 459 FMSGQVGRFFNSFGFVVAFAIMMSMAVSFTLTPMLCARL 497



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 78/206 (37%), Gaps = 6/206 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +++ Q          RV E + K  + +      +        I   +       V+ + 
Sbjct: 291 VIQKQSGGNTVAVADRVKERLAKIQSGLPADIKTEIIRDQSKFIKGSIEEVKFHLVLAAV 350

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +         W   L A T +   I  T  F  + G   N   +  ++  +G  ++D 
Sbjct: 351 LVIATIFIFLRDWRATLIAATAVPTSIVGTFAFMDVMGFSLNNMTLLGLILAVGIVIDDA 410

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
           VVV + + +  + Y   +S  D   K+  E     V T+++  +   P+A   G V    
Sbjct: 411 VVVLENVFRYTEEY--GLSGWDAASKATKEIALAVVATTLSLVVIFAPIAFMSGQVGRFF 468

Query: 796 -SFAIPMAFGIVVAASSSIFIAAPIL 820
            SF   +AF I+++ + S F   P+L
Sbjct: 469 NSFGFVVAFAIMMSMAVS-FTLTPML 493



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 65/205 (31%), Gaps = 18/205 (8%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L  L             +   + +Q      VA   VL  V+  + E+      +   
Sbjct: 830  RTLARLADERGPATIERYNRQRQIGVQCNFAPGVALGNVLPEVEGYVKELDLPPEYRYEF 889

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +   K+  +     ++   ++ + M + +  +F+     +  +  + L +   L    L 
Sbjct: 890  LGEAKLMADSNANFLLAFFLAFVFMYMILAAQFESLVHPITILMAVPLTLPFALISLMLL 949

Query: 715  GIEFNLTAVAAVLTLIG-------YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                ++ A+  +  L G         V+   V+              +   + I ++   
Sbjct: 950  RTPLDIYAMIGLFMLFGIVKKNGILQVDYTNVLI----------AKGLPRDEAILRANEA 999

Query: 768  TLGRSVYTSMAAFISVLPMAVWGGS 792
                 + T++    +++P+A   G 
Sbjct: 1000 RFRPILMTTVMLVAAMIPIATGSGP 1024



 Score = 38.9 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 50/550 (9%), Positives = 138/550 (25%), Gaps = 44/550 (8%)

Query: 5    PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
             W+++L ++I  +      P        D  P    ++   + + L+ GS L       +
Sbjct: 569  RWVIVLATVITFLS----TPVLFVLVGTDFVPK-DDQSEFEVAITLKEGSTL----ATAE 619

Query: 65   FVNGFLQMYSDELRSFLKKEGIGVFS----MRQIQNKITLSF----ADSRFKENIADKVT 116
                 L+    ++R       +   +     +   +   ++     +D   ++       
Sbjct: 620  AQCAELEEKLKKVRGVTNVFTVIGPTDGRAPKGQGDVTQVNIYCRMSDISLRDFAQRDAM 679

Query: 117  LFLQGVNSKLNV-DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               + V +           +   +           +I       +++             
Sbjct: 680  ADARVVLADYPDLRTSVQDVKLISSSAFKNAQLDLSIRGPDGDKLDRY------------ 727

Query: 176  ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                  + +   +   +       +  R                  + +G    +  L  
Sbjct: 728  ----AAEIMKKMKANPKFTDVDTNAAARSPELQVRIDRQRAADQKVNVQGVATALSLLVG 783

Query: 236  SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             +      E     S  +     A    +     +D         +  E+          
Sbjct: 784  GEPVTKYKEG----SDQYDVWLRAALPSRDRSATIDQLLVPDTKGQMVELRTLARLADER 839

Query: 296  VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                              +    ++    +         L          + E + +   
Sbjct: 840  GPATIERYNRQRQIGVQCNFAPGVALGNVLPEVEGYVKELDLPPEYRYEFLGEAKLMADS 899

Query: 356  LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
              +  +      +   ++L   F  +++    +    ++ L +   L  L LL   L + 
Sbjct: 900  NANFLLAFFLAFVFMYMILAAQFESLVH---PITILMAVPLTLPFALISLMLLRTPLDIY 956

Query: 416  SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            ++ G+ +  G+   + IL  +       K      ++       +  I  + +  + A +
Sbjct: 957  AMIGLFMLFGIVKKNGILQVDYTNVLIAKGLPRDEAILRANEARFRPILMTTVMLVAAMI 1016

Query: 476  VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
             +      G GA    A  +    L+S+  ++ +                     + R  
Sbjct: 1017 PIATGSGPGAGARASMAKVILGGQLLSLLLSLLVTPVAYSIWDDMMNRGKRVAAWIDRRR 1076

Query: 533  LIPDCIAIQF 542
              P   AI  
Sbjct: 1077 TRPAPAAIAM 1086


>gi|87300875|ref|ZP_01083717.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 5701]
 gi|87284746|gb|EAQ76698.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 5701]
          Length = 1044

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 153/547 (27%), Gaps = 30/547 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  +I   GLL      LP   ++  P   P                    
Sbjct: 8   LRRPVLTLVVSLLIVMAGLLS-----LPGLQVENLPPIAPVRV---------NVRATYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    +   + L +      +     + ITL+F      E           
Sbjct: 54  GGALAVEQGVTTPLERQLNGLDRLESIRSTSSANGSSITLTFEGG-NPELNQINAQNEAV 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            VN +L  +  +  +      +  +++   +  + +      S  + ++  D++      
Sbjct: 113 LVNRRLPPEVARLGVQVRRSSDDLLMVISFSTPKGMYSDAFLSGWLDQRLRDELQRVPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +    +      DP  L Q   T   +       N        G           
Sbjct: 173 GNVAVAGGSELAFRVWLDPVALEQRSLTITDIEDALEEQNVLAALGQVGDAPSPAGQEIT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +E +  +                    + +S    G     +          +     
Sbjct: 233 LPLEMEGRL------------RTSGELESLVVSRASNGGVVQLKDVGRVELDEESFESTA 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L        +   +   +            + L                  +   S  
Sbjct: 281 MNLAGQPTLAVLIFQRDGSNALEVSNAVNAALSRLEPDFPLGVELQRIVDVADSVRESIQ 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           +  G+      LVL+VL + +   +   +   ++ + ++ +  +L L  +++   S+ G+
Sbjct: 341 LTWGSLRDAVLLVLLVLLLALGNSRLAAITAVAVPVALVGSFTILRLTDSSINTLSLFGM 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  GL VD  I+V+E I       +  + +         S +  +++  ++  + +   
Sbjct: 401 VLATGLVVDDAIVVSEDIGRRLELGEPPWRAAHNAMQELGSAVIATSLVLVVVFLPVLAM 460

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   +  AIT+  +IL S   A++       +++++   +   +  L         
Sbjct: 461 PGSVGRLYQPIAITISATILFSTINALTFTPVTSSWLLQHGWKEPHWLRRLLDRPQRWIH 520

Query: 538 IAIQFMR 544
                  
Sbjct: 521 RLGDQYG 527



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 69/165 (41%), Gaps = 15/165 (9%)

Query: 674  IISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             +    + + +  +   +   L  + T+ L +   L   A  G+  ++ A   +L L+  
Sbjct: 879  ALGMAVVFLVLAGLYESFLDPLIILITVPLALLGALLGLAGRGLFLDIYAQVGMLVLVSL 938

Query: 733  SVNDKVVVYD----RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +  + +++ +    R+++           R+ ++++    L   + T++++    LP+ +
Sbjct: 939  AAKNGILIVEFANQRLKE-------GQGLREAVEEAAISRLRPILLTALSSLAGFLPLLL 991

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                G +   S    + FG++V+   ++F+   + L +     ++
Sbjct: 992  ATGAGAASRISIGTVVFFGLLVSTGLTLFVVPVVYLEMKLLEGRH 1036



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 12/145 (8%)

Query: 694 LGAITTLILDITKTLGFFALFGIE---FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
           L AIT + + +    G F +  +     N  ++  ++   G  V+D +VV + +    + 
Sbjct: 366 LAAITAVAVPVALV-GSFTILRLTDSSINTLSLFGMVLATGLVVDDAIVVSEDI---GRR 421

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
                        ++ E     + TS+   +  LP+    GSV       AI ++  I+ 
Sbjct: 422 LELGEPPWRAAHNAMQELGSAVIATSLVLVVVFLPVLAMPGSVGRLYQPIAITISATILF 481

Query: 808 AASSSIFIAA--PILLFIYDWRAKN 830
           +  +++         L  + W+  +
Sbjct: 482 STINALTFTPVTSSWLLQHGWKEPH 506


>gi|197286537|ref|YP_002152409.1| multidrug efflux protein [Proteus mirabilis HI4320]
 gi|227357611|ref|ZP_03841964.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Proteus mirabilis ATCC 29906]
 gi|194684024|emb|CAR45325.1| putative multidrug efflux protein [Proteus mirabilis HI4320]
 gi|227162321|gb|EEI47325.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Proteus mirabilis ATCC 29906]
          Length = 1025

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 81/701 (11%), Positives = 201/701 (28%), Gaps = 48/701 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  +G          +  + ++P  +  + I++  D  G S  +++  
Sbjct: 9   RRPVLALVVSTLIFLLGAFA-----FSKLPIRQYP-MLQNSTITIATDYPGASSELMQ-- 60

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 GF+     +  S ++       S  Q ++ +T+    +R       +V   +  
Sbjct: 61  ------GFVTQPITQAVSSVEGVDYISSSSVQGKSFVTVRMELNRDPTQALTQVMAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       ++  ++ +  ++     + +Q+     E +  + R             
Sbjct: 115 VRYKLPEQAYDPVIELSSGESTAVAYVGFSSEQI--SIPELTDYLSRVVEPMFSSINGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +        + +    D  +L     T + ++      N           F         
Sbjct: 173 KVQVFGGQQLAMRVWLDTDKLAGRNLTASDVADAIRRNNYQAAPGKVEGEF--------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       +     N D    +   D+     G           +    A      
Sbjct: 224 -----------VIANVYVNTDLTNVEEFKDMVIHNDGHNLIRLRDIGTVELGAAATETSG 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++                +    ++        +     P     +          S   
Sbjct: 273 IMNGKKAVFLGLFPTPTGNPLIIVDGIRENLTDIEKTLPPGVNVELAFETSRFIKASIDQ 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V+ V+++ +   +  ++   +I L+++    L+   G ++ L ++  +V
Sbjct: 333 VVQTLIEAILIVIAVIYLCLGSLRSVIIPVLAIPLSMLGAAGLMLAFGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I+V E +     +  S   +  +G       +    IT       +    
Sbjct: 393 LAIGLVVDDAIVVVENVHRHIEEGLSPVQAALVGAREVAGPVIAMTITLAAVYAPIGLMS 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FAIT+  S+++S   A+++   M   +        +  K  +       + 
Sbjct: 453 GLTGALFKEFAITLAGSVIVSGIVALTLSPVMSSLMLKPKENEGRMAKIAEYTFDKLAYY 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           V    +F         T      ++ +  +   V A +  +L+ 
Sbjct: 513 YSYLLNFSLTHRWLTVVFAFAVFVSLPFLYSQTKQELAPLEDQASVLTAVKAPQHANLAY 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                + L    +S      E +    +    G S +   +     K             
Sbjct: 573 AEHFNQKLDDIYMSLP----ETDSTWIINGTDGPSASFGGINFDGWKGRDRNANQIQADL 628

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
              V       +    +  +  S   + + + +R    + +
Sbjct: 629 QNRVADVEGSSIFAFQLASLPGSVGGLPVQMVLRSPLGYPV 669



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 75/205 (36%), Gaps = 10/205 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 L  ++K +   V +     T         ++++  I  ++I    + + +    
Sbjct: 297 DGIRENLTDIEKTLPPGVNVELAFETSRFIKASIDQVVQTLIEAILIVIAVIYLCLG--- 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +  +  + L +    G    FG   NL  + A++  IG  V+D +VV + +    
Sbjct: 354 SLRSVIIPVLAIPLSMLGAAGLMLAFGFSINLLTLLAMVLAIGLVVDDAIVVVENVH--- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +     +S          E  G  +  ++       P+ +     G++   FAI +A  +
Sbjct: 411 RHIEEGLSPVQAALVGAREVAGPVIAMTITLAAVYAPIGLMSGLTGALFKEFAITLAGSV 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKN 830
           +V+   ++   +P++  +     +N
Sbjct: 471 IVSGIVAL-TLSPVMSSLMLKPKEN 494



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 87/247 (35%), Gaps = 10/247 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +     + + +      + Q+       F+ +   + +    PG ++ Q           
Sbjct: 765  IRTQDNLLIPLSTVVNITTQVEPNKLTQFNQQNAAIFQAIPAPGVTMGQAVAFLENVANS 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L    +   I + I + + +  +++     L  + T+ 
Sbjct: 825  LPAGFSHDWQSDARQFTQEGNTL----VFAFIAALIIIYLVLAAQYESLVDPLIILITVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL  +  N+     ++TLIG      +++ +   +       +++ R+ I
Sbjct: 881  LSICGALVPLALGMVTLNIYTQIGLVTLIGLISKHGILMVEFANE--LQVHKNLNRREAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + T+ A  I ++P+      G +      + +  G++V    ++F+   
Sbjct: 939  IEAAKIRLRPVLMTTAAMVIGLIPLLFASGAGANSRYGLGLIIVSGMLVGTLFTLFVLPT 998

Query: 819  ILLFIYD 825
            +  F+  
Sbjct: 999  MYSFLAR 1005


>gi|289625134|ref|ZP_06458088.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
          Length = 1036

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCALLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGGLRWVLRHQTLTLLAALATLALTVLLYIVVPKGFFPVQ 557



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCALLLKREPK 495



 Score = 45.8 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I ++        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPETAIYEAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      + +R
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|189464144|ref|ZP_03012929.1| hypothetical protein BACINT_00480 [Bacteroides intestinalis DSM
           17393]
 gi|189437934|gb|EDV06919.1| hypothetical protein BACINT_00480 [Bacteroides intestinalis DSM
           17393]
          Length = 1059

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 75/620 (12%), Positives = 171/620 (27%), Gaps = 54/620 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+  L        ++++P  +P              ++  +  
Sbjct: 8   KRPVMAISISVLILVIGLISLL-----TLPVEQYPDIVPPT-----------VYVSAQYT 51

Query: 62  EDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
             D     +      L   +   E +   +     +    I + F      +  A  V  
Sbjct: 52  GADA-EAVMNSVIMPLEESINGVENMMYITSTASNSGLAIIQVYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   + +     +         +  +    + QI   
Sbjct: 111 RVAKAQGLLPAEVTKIGVSTQKRQTSFLQIGAMVCNDGRYDQTFLANYLDINVLPQIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     +        +     P R+ Q     + ++      N        G        
Sbjct: 171 EGVGDVMELGD-TYSMRIWLKPERMAQYSLVPSDITAVLGEQNIEAPTGSLGESSKNVFQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                        +    +   +            ++       
Sbjct: 230 ----------------FTMKYRGRLKSVEEFQNTVIRSQSDGSVLRLKDVADVQLGTMTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                + +      +    A  +     +        +          +    +      
Sbjct: 274 SFRSEMDSKPAVLYMVFQTAGSNATAVNKEITAQMKQMEKNLPEGTEFVTMMSSNDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + ++
Sbjct: 334 SIHNVVETLIIAILLVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG  VD  I+V E ++ +      S + +           I       +   + 
Sbjct: 394 FALVLAIGTVVDDAIVVVEAVQSKFDAGYKSAYLATKDAMGDVTMAIVSCTCVFMAVFIP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF- 532
           + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +   R   
Sbjct: 454 VTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVRA 513

Query: 533 ----------LIPDCIAIQFMRARF-WGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                            + F+R R+     +     +    +  T       + +G I +
Sbjct: 514 AYNASFNAVLGKYKKGVMYFIRHRWMVWTSLIAAVVLLVYLMSTTKTGLVPQEDQGVIMV 573

Query: 582 GVLANRPVDLSVVRSNLESL 601
            V  +    L      ++ L
Sbjct: 574 NVSISPGSTLDETTRVMDKL 593



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 76/273 (27%), Gaps = 9/273 (3%)

Query: 560  SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
               ++         +                +S   +  + L     +  N        V
Sbjct: 766  YRVMMQASPEYRLDEQSLDNMFVRNGAEMAPVSQFVTLKKVLGPETTNRFNLYSSIAANV 825

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                       Q  + E+ ++ +                     + I   I  + +  I 
Sbjct: 826  NPAEGYSSGEVQKAIEEVAEQVLPTGYGYEYGGMAREEASTGGGQTIF--IYAICVFLIY 883

Query: 680  MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             LI   +   +      I ++   +  +  F    G+E N+     V+ LIG      ++
Sbjct: 884  -LILACLYESFLVPFAVIFSVPFGLMGSFLFAKFLGLENNIYLQTGVIMLIGLLAKTAIL 942

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +     ++     +   +    +    L   + T +     +LP+      G +   S
Sbjct: 943  ITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGMLPLMFSSGAGANGNSS 999

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +  G++V   + +F+     +     + K
Sbjct: 1000 LGTGVVGGMLVGTLALLFVVPVFYIIFEFLQEK 1032



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 359 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                S         ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 419 DAGYKSAYL--ATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496


>gi|254245846|ref|ZP_04939167.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
 gi|124870622|gb|EAY62338.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
          Length = 1102

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/583 (12%), Positives = 158/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPAALKSNPTYRKVNPADSPIMV-VSLTSETASPAKVYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VTVSGSANPAVRVELEPQSLFHYGIGLEDVRAALASANANAP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEFGPQRFQLYTNDQASQASQYRDLVVAYRNGSAVRLSDLSDVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIETIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLRDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +S   +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGKSRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++  +     +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLPEQHDPQSEGRFGRFLERGFARMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +    L  +     +  +   Y +  KG     
Sbjct: 515 RGYERSLSWALRRPFLILLTLFATIGLNVYLYVVVPKGFFPQQ 557



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/192 (16%), Positives = 67/192 (34%), Gaps = 6/192 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               RV   + +    +    T+         I   L       +I  ++ +++      
Sbjct: 295 ETIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLRDTEHTLLIAVSLVVMVVFLFLR 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + I  T G   L G   +  ++ A++   G+ V+D +VV + +    
Sbjct: 355 NWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIVATGFVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +      S          E     +  S++     LP+ + GG V      FA+ ++  I
Sbjct: 412 RHIENGKSRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGIVGRLFREFALTLSLAI 471

Query: 806 VVAASSSIFIAA 817
            V+ + S+ +  
Sbjct: 472 AVSLAVSLTVTP 483



 Score = 43.1 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 94/215 (43%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + +I    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQVIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      + +    S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRNH--GKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGNGDGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G+V++   +++    + L++  +R
Sbjct: 1047 LRAPLGIAIAGGLVMSQVLTLYTTPVVYLYMDRFR 1081


>gi|45658956|ref|YP_003042.1| acriflavin resistance [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602201|gb|AAS71679.1| acriflavin resistance [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 1055

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 75/585 (12%), Positives = 156/585 (26%), Gaps = 37/585 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  +  ++ + I   G +        +  + + P                   L L   
Sbjct: 8   RNPIFSWMMMAAIILFGSI-----GFSRMGVSQMPDVDFPVV---------NVSLTLTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E+   ++               +T+    SR  +    ++   L  
Sbjct: 54  NAQVMETDVVDPIEEVLMTVEGVTEVRSISSDGSAAVTVELELSRNVDVAVQEIQTKLAQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V++KL  +    ++  +   +  I+              E+ + +     D+        
Sbjct: 114 VSNKLPEEMDPPVITKSNPDDTPIIWVSLTAVD--KSEKEKMLFVKDFLKDKFQKIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +    +   +    DP++L +       +       N          R    S     
Sbjct: 172 EIILGGYVDRTINVYLDPTQLSRNEIAVDDIVNTLKEQNLEVPSGRLENRTNEISLRAVG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +   I LN  +                     R         +   L  V    
Sbjct: 232 EVPTAEQFGNIFLNSRSG----------------SPLFRSIRLKDISIVEDGLGEVRRIS 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              L+          +   N G    S + 
Sbjct: 276 RFNGISAVAIGIKKLKGANAVQVGNLVKDKVKELKPKLPKGYDLTISNDNTGYIRDSVNE 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A L   V  + +   K       +I  +VI T   L   G T+   ++ G+ 
Sbjct: 336 LEFTLIFSAILTGFVCRLFLGNWKSTGNVLLAIPTSVIGTFLFLYFAGFTINTFTMLGLS 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+V E I       +S F +   G +        + +  +   + + F  
Sbjct: 396 LATGIVVDDAIMVLENITRHREMKKSWFQAALEGATEIRFAALAATLAVVAIFLPVAFMK 455

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIPD 536
           G   R    F +T+ +S+L+S+F A+S            + K  K    +  +       
Sbjct: 456 GIIGRYFLEFGVTISVSVLLSLFEALSFTPMRASLYAENKKKNDKKSIFSVSAHEIWNRW 515

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              I   +     +   + +            L +      G  +
Sbjct: 516 ISKISIFKKMDPIMERFLEYITIFYERSIDFVLKFPRWIVFGSTI 560



 Score = 42.4 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 70/221 (31%), Gaps = 10/221 (4%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----IVGVI 674
           V +  +        +V  +VK K+ E+ P         +    +  +           + 
Sbjct: 283 VAIGIKKLKGANAVQVGNLVKDKVKELKPKLPKGYDLTISNDNTGYIRDSVNELEFTLIF 342

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +   +       W      +  +   +  T  F    G   N   +  +    G  V
Sbjct: 343 SAILTGFVCRLFLGNWKSTGNVLLAIPTSVIGTFLFLYFAGFTINTFTMLGLSLATGIVV 402

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +D ++V + +    +      S+     +   E    ++  ++A     LP+A   G + 
Sbjct: 403 DDAIMVLENI---TRHREMKKSWFQAALEGATEIRFAALAATLAVVAIFLPVAFMKGIIG 459

Query: 795 G---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                F + ++  ++++   ++           + + KN +
Sbjct: 460 RYFLEFGVTISVSVLLSLFEALSFTPMRASLYAENKKKNDK 500


>gi|237732123|ref|ZP_04562604.1| multidrug efflux system subunit MdtB [Citrobacter sp. 30_2]
 gi|226907662|gb|EEH93580.1| multidrug efflux system subunit MdtB [Citrobacter sp. 30_2]
          Length = 1040

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 58/586 (9%), Positives = 154/586 (26%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPIAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETIRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPTRAVTLSANDQMQSADEYRQLIVAYKNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKQQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVSVLSDRTTNIRASVADT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPAVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR----YKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   ++      K+ +    +      +I 
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLNQASLRKQNRFSRASERMFDRVIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                         + +S+     ++ ++    +  G        +
Sbjct: 524 GYGHWLAKVLNHPWLTLSVALGTLALSVMLWVFIPKGFFPIQDNGI 569



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 72/214 (33%), Gaps = 12/214 (5%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI- 670
              K   + +  Q           + +++ + ++           V    +  +      
Sbjct: 283 WANKQQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVSVLSDRTTNIRASVAD 342

Query: 671 ----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               + + I+ + M+IY+++R      +     + L +  T           N   + A+
Sbjct: 343 TQFELMLAIALVVMIIYLFLR-NIPATIIPAVAVPLSLIGTFAVMVFLDFSINNLTLMAL 401

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G+ V+D +VV + +    +             K   E     +  + +    ++P+
Sbjct: 402 TIATGFVVDDAIVVIENI---SRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPL 458

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G   G +   FA+ +A  I+++A  S+ +  
Sbjct: 459 LFMGDIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|198276130|ref|ZP_03208661.1| hypothetical protein BACPLE_02319 [Bacteroides plebeius DSM 17135]
 gi|198270942|gb|EDY95212.1| hypothetical protein BACPLE_02319 [Bacteroides plebeius DSM 17135]
          Length = 1047

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 72/619 (11%), Positives = 172/619 (27%), Gaps = 50/619 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L Q  +++FP   P                      
Sbjct: 9   RPILAGVISVLILILGFI-----GLSQLPIEQFPEIAPPTV---------SVSATYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   + +  +E  + ++       +       KIT+ F      +     V   +  
Sbjct: 55  AETVLKSVVVPLEEALNGVENMMYMTSTASNTGAAKITVYFRQGTDPDMATVNVQNRIAT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  K+ +     +  +I                 +  +      ++       
Sbjct: 115 GEGLLPAEVTKSGITVRKRQTSNIKQLAVYSPDDSFDEAFLTNYMKINIEPRLSRIAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP+++++     + ++      N        G            
Sbjct: 175 EVNVFGY-EYSMRIWLDPNKMQKYSLVPSDITTVLDEQNVEAATGTLGAEAKNTFQYVLK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         +                 I           
Sbjct: 234 YRGR----------------YENEVDYENMVIKSLPNGEVLRLKDVATIELGTRAYDYIG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        + +  +  + N  IE        +          +           S   
Sbjct: 278 EVNGHPGCNIMIAQTSGSNANEIIEEIDRTVEEISKTLPKGIKIVDLMSTKDFLDASIKS 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +   +   SI ++++ T A LSL+G +L + ++  +V
Sbjct: 338 VIKTLIEAIILVVLVVYIFLQSLRSTFIPALSIIVSLVGTFAFLSLVGFSLNMLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++ +  +   S + +         S +  +    +   + + F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQAKFDEGYNSSYLATIDAMDGITSALVTTTFVFMAVFIPVSFI 457

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------------MKSIDI 525
           G   G     F +TM  ++ IS+  A+++  A+   I+   +               I  
Sbjct: 458 GGTTGTFYTQFGLTMAAAVAISLLNALTLSPALCALIMTPHQTAEDGSKLSFSSRFHIAF 517

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN--YGIDFKGGIQLGV 583
           +      +    + + FM  R W  G  ++ +      L           +  G + + V
Sbjct: 518 DTAFHRLVTKYKVGVVFMLKRKWLAGSLLVVACAGFAFLMMTTKTGLVPNEDMGTVFIDV 577

Query: 584 LANRPVDLSVVRSNLESLQ 602
             +    +   R  +E + 
Sbjct: 578 RTSPGNSVQETRKVMEQVD 596



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 86/220 (39%), Gaps = 6/220 (2%)

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            D   +        ++  Q    ++      ++   ++I++ +P        +       
Sbjct: 273 YDYIGEVNGHPGCNIMIAQTSGSNANEIIEEIDRTVEEISKTLPKGIKIVDLMSTKDFLD 332

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             I+  I  +I + I +++ ++I             ++I+ +  T  F +L G   N+  
Sbjct: 333 ASIKSVIKTLIEAIILVVLVVYIFLQSLRSTFIPALSIIVSLVGTFAFLSLVGFSLNMLT 392

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A++ +IG  V+D +VV + ++        S     +   +++      V T+      
Sbjct: 393 LFALVLVIGTVVDDAIVVVEAVQAKFDEGYNSSYLATI--DAMDGITSALVTTTFVFMAV 450

Query: 783 VLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +P++  GG+       F + MA  + ++  +++ ++  +
Sbjct: 451 FIPVSFIGGTTGTFYTQFGLTMAAAVAISLLNALTLSPAL 490



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/413 (8%), Positives = 117/413 (28%), Gaps = 21/413 (5%)

Query: 434  VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
            +     ++  +      ++D   +         +   ++        G G   GF + + 
Sbjct: 626  MFTIRLKDWSERPDKEDAIDAVMAEISRRTAFISSADIMPFTRPMIPGYGVNSGFEVYVQ 685

Query: 494  LSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
                 +    +   R  +  + +  ++     +  ++F      +     +         
Sbjct: 686  DQKGGTTEDLLKYTRLFLDELNKRPEIGRATTSFDTKFPQYLVEVDAARCKRNGVSPADV 745

Query: 554  ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +      I   +   +N        + +       +D   + S       G++S  +   
Sbjct: 746  LSTLSGYIGGNYASNMNR-FSKLYRVMVQAPPQFRLDTESLHSIFVRNDEGEMSPISQYL 804

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG- 672
            +   +   +     ++     +                          +      G +  
Sbjct: 805  KLTRVYGSEMLTRFNLFSAIQVNGAAATGYSSGQAIKAIQEVAAQTLPTGYGFEFGGMSR 864

Query: 673  ----------VIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
                      ++     + IY+    +    +  +  I ++   +  +  F  +FG+E N
Sbjct: 865  EESNTGNTTTLVFVICVVFIYLILCALYESLFVPMAVILSVPFGLAGSFLFAKMFGLENN 924

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            +     ++ LIG      +++ +   +        ++       +    L   + TS+  
Sbjct: 925  IYLQTGLIMLIGLLSKTAILLTEYASE---RRRHGMTIMQAAVSAAQVRLRPILMTSLTM 981

Query: 780  FISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               +LP+      G +   S  +    G+++   + +FI  P+ +     + K
Sbjct: 982  IFGMLPLMFSTGVGANGNISIGVGTVGGMLIGTIALLFIVPPLFMIFQYLQEK 1034


>gi|254424047|ref|ZP_05037765.1| RND transporter, HAE1/HME family, permease protein [Synechococcus
           sp. PCC 7335]
 gi|196191536|gb|EDX86500.1| RND transporter, HAE1/HME family, permease protein [Synechococcus
           sp. PCC 7335]
          Length = 1035

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 58/516 (11%), Positives = 147/516 (28%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ ++   GL+           +D  P+                  +     
Sbjct: 10  RRPVPTIVLFLVLTITGLVA-----FGNLGIDANPNIDVPAVQ---------VQVTQTGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L        ++    ++  + F      +   + V   +  
Sbjct: 56  GPAEMENQITKKIEDAVAGLGNIDSLTSTVSDGSSETVIEFNLGVDTDQATNDVRDAITR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +      D    ++         +V+     D       E S  + R+   ++  +E   
Sbjct: 116 IRQDFPEDASDPIVQRLEFSGGPVVIYTVGSD--QRSVEEISDLVDREIGRKLLAAEGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++    DP++L  L  T  +++      N +  G    +  +        
Sbjct: 174 RVDRVGGVDREIRVNLDPAQLNALGITATEVNDQIRQFNINLPGGRSDISGIEQGIRTLG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  + +        P                      +  ++      +    
Sbjct: 234 SAATVDELRSLQIVLPAGGTTP--------------------LSSLGSVEDDFGEIRQSA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +                 ++     A L           +          S   
Sbjct: 274 YLNGQPVVGFRVYRSKGSVVVTVEDSVTEAIAELEQTLPEDITFELTFTQGTDIRDSYQA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   L +IV+ + +   +  L+   ++ L++I T  +L  LG TL   S+  + 
Sbjct: 334 SIDALILGCILAVIVVGLFLRNWRTTLITATALPLSIIPTFLVLQALGYTLNSMSLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I+  E      +  +  F +     +     +  +  T +   + + F G
Sbjct: 394 LAVGNLVDDAIVEIENTERHIQMGKPPFKAAIDSTAEVGLAVVTTTATIVAVFLPVAFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   + F +T+ ++ + S   A  +   M  ++
Sbjct: 454 GIPGQFFKPFGVTVAVATMFSTLVARLVSPMMAAYL 489



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 78/251 (31%), Gaps = 9/251 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           Q+ + A     LS + S  +       S              + +    V     +    
Sbjct: 245 QIVLPAGGTTPLSSLGSVEDDFGEIRQSAYLNGQPVVGFRVYRSKGSVVVTVEDSVTEAI 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAIT 698
            ++ + +P               R+  +  I  +I+   +A+++       W   L   T
Sbjct: 305 AELEQTLPEDITFELTFTQGTDIRDSYQASIDALILGCILAVIVVGLFLRNWRTTLITAT 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISF 757
            L L I  T       G   N  ++ A+   +G  V+D +V      +N + +       
Sbjct: 365 ALPLSIIPTFLVLQALGYTLNSMSLLALTLAVGNLVDDAIVEI----ENTERHIQMGKPP 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                 S  E     V T+       LP+A  G   G     F + +A   + +   +  
Sbjct: 421 FKAAIDSTAEVGLAVVTTTATIVAVFLPVAFMGGIPGQFFKPFGVTVAVATMFSTLVARL 480

Query: 815 IAAPILLFIYD 825
           ++  +  ++  
Sbjct: 481 VSPMMAAYLLK 491



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 80/223 (35%), Gaps = 7/223 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                          +   + +E V +          ++       +I +E+  +  + + 
Sbjct: 793  NRSRQITVGANLQGITLGQAIEAVGELPIMQNLPDGVREQSTGDAEIQQEVFSRFGLALG 852

Query: 675  ISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             + + +  + + +   + + +  +  L L +   L    +      L A+  ++ LIG  
Sbjct: 853  TAILMIYAVLVLLYNDFLYPIAVMMALPLCVGGALMGLLVAQKPMGLFALIGIVLLIGLV 912

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ D     +       S R  + ++    L   + TS++    ++P+A+    G
Sbjct: 913  TKNSILLVD---YALIAMREGKSRRQAVIEAGITRLRPILMTSISTVAGMVPIALELGAG 969

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G      AI +  G   +   ++ +      +I   R++ ARI
Sbjct: 970  GETRSPMAIAVIGGFSTSTLLTLVVIPVFFTYISGARSRTARI 1012


>gi|78213810|ref|YP_382589.1| hydrophobe/amphiphile efflux-1 HAE1 [Synechococcus sp. CC9605]
 gi|78198269|gb|ABB36034.1| Hydrophobe/amphiphile efflux-1 HAE1 [Synechococcus sp. CC9605]
          Length = 1140

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/525 (13%), Positives = 146/525 (27%), Gaps = 33/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I  +GL+       P   ++  P   P                     +
Sbjct: 10  RPVLSTVCSLLIVIVGLIAI-----PILPIENLPDIAPPTVK---------VQATYVGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++    I   S     + I++SF            V   +  
Sbjct: 56  AVAVEQGVTSVLEQQINGVENMDFITSNSSSDGVSSISVSFDSGTDGNINQVNVQNRVSL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQIGISE 178
              +L  + +K+ +         +++     +            S  + +   D +   +
Sbjct: 116 AEPQLPEEVRKSGVTVNKASNSILLVYNFVNEDPSKTEYSVETISGYLDKNLTDNVKRVK 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                       I      DP +L     T   +       N        G     +   
Sbjct: 176 GVGDVTYFGNRKIAFRLWLDPEKLTANNLTATDVVNQLRSQNRLVPAGKIGGAPAPEGQE 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + V+ +  ++ I                 + +   + G     +             +
Sbjct: 236 YTFTVQLQGRLTSIQEFEN------------IILRTTDAGGLVRLKDVGRVELGGETYGI 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D   L             +  +          +                          S
Sbjct: 284 DAMDLKGTPSVGIAIYQLSGSNAIEVSNGVKEVLNEFEQTLPVGLGVQKIYDTTDFINQS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 +      LV+++LF+ +   K  LV   +I + +I T AL+   G +L   ++ 
Sbjct: 344 IKGVTNSLRDAVILVVLILFLFLQNWKATLVPAIAIPVALIGTFALVLAFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           G+VL  GL VD  I V E    +  +  +   +        +   I  S +   +   VL
Sbjct: 404 GLVLATGLVVDDAITVVEDTSAKKAEGMTSVQAAMETMDELFGAVIATSLVKMAVFLPVL 463

Query: 478 FFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           FF G  G   + FA T+  SI IS F A++    +   ++  +  
Sbjct: 464 FFPGATGTIYKQFAATILFSIGISTFNALTFSPMLSALLLSRETK 508



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T      FG   N   +  ++   G  V+D + V +       
Sbjct: 369 WKATLVPAIAIPVALIGTFALVLAFGFSLNQLTLFGLVLATGLVVDDAITVVE---DTSA 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
                ++      ++++E  G  + TS+      LP+  + G    I   FA  + F I 
Sbjct: 426 KKAEGMTSVQAAMETMDELFGAVIATSLVKMAVFLPVLFFPGATGTIYKQFAATILFSIG 485

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
           ++  +++  +  +   +     K
Sbjct: 486 ISTFNALTFSPMLSALLLSRETK 508



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 68/214 (31%), Gaps = 9/214 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R     G         + +          S              E+    +  VI +
Sbjct: 911  NLYRSIKIDGTPKEGNSSGQAIGAMKQIFNAGSYQGLGFDWTGISREEVKAGSLAVVIFA 970

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               + +++ +      +   +  + T+   +   L F    G   N+ A   ++ LIG +
Sbjct: 971  LGILAVFLVLSAQYESYTDPIIILLTVPTALLGALVFLGGAGQVLNIYAQVGLVMLIGLA 1030

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ D      +      S  +    S    L   + T++++    LP+ +    G
Sbjct: 1031 GGNAILIVD---LANQKMGEGESALEAAKFSAKSRLRPILMTAISSLTGFLPLMLASGAG 1087

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 S  + +  G++VA   S  +     + + 
Sbjct: 1088 AQSQSSLGLVVFGGLLVATFLSTLVVPVFYVVMK 1121


>gi|312880422|ref|ZP_07740222.1| protein-export membrane protein SecD [Aminomonas paucivorans DSM
           12260]
 gi|310783713|gb|EFQ24111.1| protein-export membrane protein SecD [Aminomonas paucivorans DSM
           12260]
          Length = 460

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 149/487 (30%), Positives = 249/487 (51%), Gaps = 57/487 (11%)

Query: 41  KNRISLGLDLRGGSHLVLEVDE---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
           + R+ LGLDL+GG+H+VL+             +Q     LR+ + + G+    +++   +
Sbjct: 27  QGRVRLGLDLKGGAHIVLQAVGTPESPITEDSIQRLLAVLRNRIDQYGVTEPVIQRQGKD 86

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           ++ +        E   D +         K+                              
Sbjct: 87  RVAVDLPGVADPEAALDLIGRTALLEFRKVE----------------------------- 117

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK 216
                             G+S                  EQ  +R         +++   
Sbjct: 118 ------------------GVSPEVPPGPERKNYDSDASFEQAKTRWAAAKAEVDRVAEEM 159

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
                       G++  RD +G  YL+   V ++G  L  A   FD  + +PVV + F++
Sbjct: 160 KAQV----AGKPGMQVARDEEGRVYLL-GPVYVAGKDLKDARTAFDQFS-RPVVSLKFNK 213

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            GAR F E T  N+GK +++VLDG V++APV+ + I  G+AQISG F+   A  L+ MLR
Sbjct: 214 EGARLFDEATAANVGKQISIVLDGIVVSAPVVQERISGGEAQISGRFSESEAQRLSIMLR 273

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           AG+LP+K+ ++E R+VG  LG+DS+ +G  + + G  L+V+FM++ YG  G+ AD ++ +
Sbjct: 274 AGALPVKVEVLENRSVGPTLGADSVREGIKSGLIGAGLVVVFMLLYYGILGIAADLALGI 333

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           +++L +A + L+ +TLTLP I GI+L IG+AVD NIL+ ER+REE R  +++  +LD GF
Sbjct: 334 SLLLVMAGMILMQSTLTLPGIGGIILTIGMAVDGNILIYERMREEYRSGKTLLAALDAGF 393

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           S+A   I DSNIT LIA  VLF+FG G +RGFA+T+ + ++ ++F  + + RA++  ++ 
Sbjct: 394 SKALVVILDSNITTLIAAGVLFYFGSGPIRGFAVTLSIGVVAAVFCNVVVTRAILQMMLA 453

Query: 517 YKKMKSI 523
            K+  ++
Sbjct: 454 RKRSLAL 460



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 79/173 (45%), Gaps = 4/173 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + +R+GI   +I A  +++++ + +     + A   L + +   +    L  
Sbjct: 288 SVGPTLGADSVREGIKSGLIGAGLVVVFMLLYYGI-LGIAADLALGISLLLVMAGMILMQ 346

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +  ++  IG +V+  +++Y+RMR+    Y +  +    +D   ++ L   + +
Sbjct: 347 STLTLPGIGGIILTIGMAVDGNILIYERMREE---YRSGKTLLAALDAGFSKALVVILDS 403

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++   I+   +  +G   I  FA+ ++ G+V A   ++ +   IL  +   + 
Sbjct: 404 NITTLIAAGVLFYFGSGPIRGFAVTLSIGVVAAVFCNVVVTRAILQMMLARKR 456


>gi|269138426|ref|YP_003295126.1| hypothetical protein ETAE_1070 [Edwardsiella tarda EIB202]
 gi|267984086|gb|ACY83915.1| hypothetical protein ETAE_1070 [Edwardsiella tarda EIB202]
 gi|304558452|gb|ADM41116.1| Multidrug transporter MdtB [Edwardsiella tarda FL6-60]
          Length = 1042

 Score =  157 bits (396), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 56/527 (10%), Positives = 137/527 (25%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           +   P                    +     
Sbjct: 22  RPVATTLLMIAILLAGLVA-----YRALPVSALPQVDYPTIQ---------VVTLYPGAS 67

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D     +    +     +              + ITL F  S   +    +V   +   
Sbjct: 68  PDVTASAITAPLERQFGQMSGLQQMSSQSSGGASVITLQFQLSLALDVAEQEVQAAINAA 127

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +   +    +    +  +   +I        
Sbjct: 128 TNLLPNDLPYPPIYSKVNPADPPILTLAVVSDAL-SLPQVEDLVETRISQKIAQVGGVGL 186

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    + +       ++  +       N +             +      
Sbjct: 187 VTLAGGQRPAVRVRLNGAAAAAYGLSSETIRSAIANANVNSPKGSLDGPTRAITLNANDQ 246

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                       +   ++          +     ++ +          
Sbjct: 247 LRSA--------------------QEYQNLIVAYRSGAPVYLRDIASVEQGAENTQLAAW 286

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +        LR          V          S S  
Sbjct: 287 ANNHPAIVINVQRQPGANVIATADAVLAQLPQLRESLPASVKISVLNDRTQTIRASVSDV 346

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L++I T A +  LG ++   ++  + +
Sbjct: 347 RHELLLAVALVVMVIYLFLRNLPATLIPGVAVPLSLIGTFAAMYFLGFSINNLTLMALTI 406

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      TI     + +   + L F G 
Sbjct: 407 ATGFVVDDAIVVIENIERHLENGDPPLRAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 466

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 467 IIGRLFREFAVTLAVAILISAVVSLTLTPMMCARLLSQESLRRQNRF 513



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 78/232 (33%), Gaps = 12/232 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R      Q  + +        +  + +  Q           + V  ++ ++        
Sbjct: 268 LRDIASVEQGAENTQLAAWANNHPAIVINVQRQPGANVIATADAVLAQLPQLRESLPASV 327

Query: 654 TEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
              V    ++ +          + + ++ + M+IY+++R      L     + L +  T 
Sbjct: 328 KISVLNDRTQTIRASVSDVRHELLLAVALVVMVIYLFLR-NLPATLIPGVAVPLSLIGTF 386

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                 G   N   + A+    G+ V+D +VV + +    +             K   E 
Sbjct: 387 AAMYFLGFSINNLTLMALTIATGFVVDDAIVVIENI---ERHLENGDPPLRAALKGAGEI 443

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
               +  + +    ++P+   G   G +   FA+ +A  I+++A  S+ +  
Sbjct: 444 GFTIISLTFSLIAVLIPLLFMGDIIGRLFREFAVTLAVAILISAVVSLTLTP 495



 Score = 46.2 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 80/223 (35%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++     L +   D     + +  +      I   + +           +  +   +  +
Sbjct: 814  DQFPSATLSFNVPDGYTLEQAIAEIDAARRAIGMPADMTLHFQGAALAFQSALDSTLWLI 873

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + +AM I + I ++ +   +  ++TL       L    + G   ++ A+  ++ LIG 
Sbjct: 874  LAAIVAMYIVLGILYESFIHPITILSTLPSAGVGALLALMISGQALDVIAIIGIILLIGI 933

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D         T  ++  D I ++        + T+MAA +  LP+      
Sbjct: 934  VKKNAIMMID--FALAAERTQGMAPHDAIYQACLLRFRPILMTTMAALLGALPLMFSQGV 991

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     I M  G++V+   ++F    I L          R
Sbjct: 992  GAELRQPLGICMVGGLIVSQILTLFTTPVIYLAFDRLARNTHR 1034


>gi|296129644|ref|YP_003636894.1| protein-export membrane protein SecD [Cellulomonas flavigena DSM
           20109]
 gi|296021459|gb|ADG74695.1| protein-export membrane protein SecD [Cellulomonas flavigena DSM
           20109]
          Length = 606

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 133/533 (24%), Positives = 213/533 (39%), Gaps = 43/533 (8%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FVN 67
              +     + A   +   S+             +L LDL GG+ ++L    +      +
Sbjct: 1   MLTVALFASIFAGTRWGDASLTP-----------NLALDLEGGTQIILRPVAEAEGRVTS 49

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +      +R  +   G+    +        +     R  E   D V    Q       
Sbjct: 50  ETIDQAIAVIRQRVDASGVAEAEITSQGGNRIVVGLPGRPSEETLDLVRTSAQMEFR--- 106

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 L++                D     A+E   E      D     ++  +   S 
Sbjct: 107 ----PVLVMGAATPTTPAEDEPAAEDGAQDPAVEDGAEDAAAAEDAAAAEDAAAEEPPSD 162

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS------KKGFMFGVRFLRDSDGNQY 241
                 P    PS +   +    +  F  +             G         D +G   
Sbjct: 163 EPGKASP--DSPSDVAYYVTPAVQAEFDALDCTLPENRTGGVPGDPEKAVVACDLEGLSK 220

Query: 242 LVEDKVEISGIHLNGATA-----NFDPKTHKPVVDISFDEMGARRFFEVTRDNIG----- 291
            +   VEI G  +  AT+          T + VV++ F   G  RF EVT          
Sbjct: 221 FILGPVEIPGSEIATATSGLGTTQTGASTGQWVVNLEFTSKGTPRFTEVTTRLATSTPPL 280

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
              AVVLD  V++AP +N+ IP+G+AQISG+FT ETA  LA  L  GSLPI         
Sbjct: 281 NQFAVVLDALVISAPSVNEVIPNGQAQISGSFTRETAATLANQLNFGSLPISFEEQSVEQ 340

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           + A LGS+ + KG  A V GL+L+V++ +  Y   GLV   S+ +  ++T  +++LL   
Sbjct: 341 ISATLGSEQLEKGLIAGVFGLLLVVVYSLFQYRTLGLVTVASLLVAAVVTYGIIALLSWV 400

Query: 412 L----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
                +LP +AGI++ IG+  DS I+  ERIR+E R  +++  +++ G+ RA  TI  S+
Sbjct: 401 QGYRLSLPGVAGIIVAIGITADSFIVYFERIRDELRDGRTLGAAIEKGWERARRTILASD 460

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
                A +VL+    G VRGFA T+GL+ L+ +         +M+ + R +  
Sbjct: 461 AVNFTAAIVLYLLAVGGVRGFAFTLGLTTLVDLLVVFMFTHPLMVLLGRTRFF 513



 Score =  117 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 95/284 (33%), Gaps = 9/284 (3%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                S L +  +        +N     KG  +        +  S    N  ++ +  + 
Sbjct: 233 IATATSGLGTTQTGASTGQWVVNLEFTSKGTPRFT-EVTTRLATSTPPLNQFAVVLDALV 291

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                  +          G    +T      +     +      Q+ E +   +  E + 
Sbjct: 292 ISAPSVNEVIPNGQAQISGSFTRETAATLANQLNFGSLPISFEEQSVEQISATLGSEQLE 351

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAV 723
           KG++  +   + +++Y   +++    L  + +L++    T G  AL     G   +L  V
Sbjct: 352 KGLIAGVFGLLLVVVYSLFQYR-TLGLVTVASLLVAAVVTYGIIALLSWVQGYRLSLPGV 410

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A ++  IG + +  +V ++R+R  ++      +    I+K         + +    F + 
Sbjct: 411 AGIIVAIGITADSFIVYFERIRDELRD---GRTLGAAIEKGWERARRTILASDAVNFTAA 467

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + + +     +  FA  +    +V          P+++ +   R
Sbjct: 468 IVLYLLAVGGVRGFAFTLGLTTLVDLLVVFMFTHPLMVLLGRTR 511


>gi|33519698|ref|NP_878530.1| preprotein translocase subunit SecF [Candidatus Blochmannia
           floridanus]
 gi|33517361|emb|CAD83746.1| protein-export membrane protein SecF [Candidatus Blochmannia
           floridanus]
          Length = 300

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 79/286 (27%), Positives = 150/286 (52%), Gaps = 2/286 (0%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+      +  S+   I     +   G N+GIDF GG+ + + + + +D+  +R    
Sbjct: 9   YNFVSHGRIILFCSMFLCILLCTSMIIKGFNWGIDFTGGLLIEIESEQDLDIVKIRKYFV 68

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI-VPLSTIQNTEIVG 658
            L   +   Q F+  KN +VRL        +   +   +    ++I      IQ    + 
Sbjct: 69  QLGYNNTVVQCFNNTKNIIVRLPLAHNFDKSDQNIKIKILDVFSKIITHKFYIQQMNWIS 128

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P  S  LI+  I+  +++ I + +YI +RF+   ++  I +L+ DI   LG  ++F +E 
Sbjct: 129 PNSSENLIKISIISTLVALICIFLYILVRFELRLSVSVIISLVHDIIIILGILSIFTVEI 188

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           N T +AA++++IGYS+NDK+V++DR R+N        SF ++I+ S+++ L R++ TS+ 
Sbjct: 189 NSTIIAALISVIGYSLNDKIVIFDRFRENFNNMLQLSSF-EIINISLSQVLNRTIITSVT 247

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             + +L + V GGS++  F+I +  G++V   SSI+I + ++  + 
Sbjct: 248 TMMVLLVLLVLGGSILYEFSITLLLGVIVGTISSIYITSFLVFKLK 293


>gi|330446630|ref|ZP_08310282.1| acrB/AcrD/AcrF family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490821|dbj|GAA04779.1| acrB/AcrD/AcrF family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 1044

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 56/529 (10%), Positives = 145/529 (27%), Gaps = 38/529 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGVVS-----FSKLAIREMPDVESPVVT---------VMTTYPGT 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +          R   ++I++ F+           V   +  
Sbjct: 55  SATVMESQVTTPIEDELSGISGIDNITSITRNGMSRISIEFSMDWDLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++          V    +  +      + +    R   D+  +     
Sbjct: 115 AQRRLPDDANDPVVSKDNGSGEPAVYINLSSSE--MDRTQLTDYAQRVLEDRFSLINGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     TT  +                          N  
Sbjct: 173 SVSLSGGLYKVMYVKLKPELMVGRGVTTKDIIDALRDE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   +V      +   TA      +     +          +     ++           
Sbjct: 214 LPGGEVRNDQTVMAVRTARLYRDANDFKYLVVRTTENGTPIYLKDVADVAVGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V         +  +     +      A ++          V+         S S 
Sbjct: 274 KSNGVVNLSLGIVTMSDANPLEVAKDVRAEVARMQKFLPAGTSLTVDYDATVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV+ VL++ +   +  L+   ++ +++I         G ++ L ++  ++
Sbjct: 334 VYSTLLVTGALVIWVLYVFIGQARATLIPAVTVPVSLISAFITAYFFGFSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I    ++ +S   +   G       +  +    ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVVENIFHHMQRGESPLLAAYKGTREVGFAVIATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           G        F++ + ++++ S   A+++   M   I++     +     
Sbjct: 454 GMVGRLFTEFSVLLAMAVIFSSLIALTLTPVMGSKILKANVKPTRFNLW 502



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 80/244 (32%), Gaps = 10/244 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F       + L            V + V+ 
Sbjct: 243 LVVRTTENGTPIYLKDVADVAVGAENENSTFKSNGVVNLSLGIVTMSDANPLEVAKDVRA 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG--IVGVIISAIAMLIYIWIRF--KWYFALGA 696
           ++  +        +  V    +  + R    +   ++   A++I++   F  +    L  
Sbjct: 303 EVARMQKFLPAGTSLTVDYDATVFIERSISEVYSTLLVTGALVIWVLYVFIGQARATLIP 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             T+ + +         FG   NL  + A++  IG  V+D +VV + +           S
Sbjct: 363 AVTVPVSLISAFITAYFFGFSINLLTLMALILAIGLVVDDAIVVVENI---FHHMQRGES 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
                 K   E     + T+    +  LP++   G V      F++ +A  ++ ++  ++
Sbjct: 420 PLLAAYKGTREVGFAVIATTAVLVMVFLPISFMEGMVGRLFTEFSVLLAMAVIFSSLIAL 479

Query: 814 FIAA 817
            +  
Sbjct: 480 TLTP 483



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + I   L    L G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMLTVPMGIFGGLAGLWLMGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    + F   I  +    L   + T+       +P+ +    G     S    + FG+
Sbjct: 931  QLRDKGVEFEQAIVDASVRRLRPILMTAFTTLFGAIPLIISTGAGAESRISVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A   ++F+   +   +        
Sbjct: 991  AFATLVTLFVIPAMYRLMAGNTKSPG 1016


>gi|74318337|ref|YP_316077.1| RND efflux transporter [Thiobacillus denitrificans ATCC 25259]
 gi|74057832|gb|AAZ98272.1| probable RND efflux transporter [Thiobacillus denitrificans ATCC
           25259]
          Length = 1023

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 78/619 (12%), Positives = 160/619 (25%), Gaps = 44/619 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G L        Q  ++  P             LR      L    
Sbjct: 10  RPVATLMLALAMALFGALA-----YTQLPINDLPQVDFPT-------LR--VSAALPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +   + +           Q    ITL F   R  +  A  V   +   
Sbjct: 56  PETMANTVATPLERQLATVAGIESMSSQSSQGSTSITLQFELGRDIDAAAQDVQTAVAQA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L        L      +  I+    + +++     E       +   ++       Q
Sbjct: 116 ARNLPQGMDPPQLRKINPADSPILYLALSSERLP--LTELDALADSRVAQRLSSLSGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L        L    DP++L+    T A +       N +             +      
Sbjct: 174 VLVFGSQKYALRIYLDPAKLQARGLTFADVIEKVQAANANLPAGTLDGASRAYTVKAPVA 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D  +                      +I                     +        
Sbjct: 234 LADARDFG--------------------EIIVAYRDGTALRVKDLGRAEDSVEDDKRRTW 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +E    +   + A         V          S    
Sbjct: 274 YNGTRAIVLAIQRQPGANTVEVVERIRAMLPQIEAELPDGVRLQVHSDRSRFVKDSLHEV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T  +   LV++V+F  +   +  L+A   +  +++ T A + LLG +L   S+  I L
Sbjct: 334 NFTLLLALVLVILVIFAFLHNLRATLIAALVLPSSLLGTFAFMHLLGYSLNNLSLMAITL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG  VD  ++V E I       +    +   G      T+    I+     + + F GG
Sbjct: 394 AIGFVVDDAVVVIENITRHLDMGKPRMQAALDGAQEIGFTVLSMTISLAAVFLPILFMGG 453

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLSRFFLI 534
                 + FA+++G+++L+S   A+++   +    +       +  ++ D          
Sbjct: 454 MVGRLFQEFAVSIGVAVLLSGVVALTLTPMLCARALVRESPTNRLSRAFDAGFTRFQRFY 513

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            D +           +   +L                     G I   V     +    +
Sbjct: 514 GDSLRASMRHRGAMLLLSLVLLVAMLWLAGQVKQGFIPRVDSGMIFASVQYPEGIPFDEL 573

Query: 595 RSNLESLQIGDISFQNFDG 613
               + L          +G
Sbjct: 574 SRRQQQLAARVQRHPAVEG 592



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 51/152 (33%), Gaps = 6/152 (3%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L A   L   +  T  F  L G   N  ++ A+   IG+ V+D VVV + +
Sbjct: 350 AFLHNLRATLIAALVLPSSLLGTFAFMHLLGYSLNNLSLMAITLAIGFVVDDAVVVIENI 409

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +                 E     +  +++     LP+   GG V      FA+ +
Sbjct: 410 ---TRHLDMGKPRMQAALDGAQEIGFTVLSMTISLAAVFLPILFMGGMVGRLFQEFAVSI 466

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              ++++   ++ +   +        +   R+
Sbjct: 467 GVAVLLSGVVALTLTPMLCARALVRESPTNRL 498



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 64/155 (41%), Gaps = 7/155 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ + + + + + + ++     L  +T L L     L    L   E N+ +   ++ L+G
Sbjct: 857  LLFTVVVIYMVLAVLYEHLGHPLTILTALPLAGFGALLVLLLAEQELNIFSFVGIILLVG 916

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ D     +      +S  D I ++    L   + T+ AA ++ LP+A+   
Sbjct: 917  LVKKNGIMMIDFA---LARQRAGMSAEDAIVEASLVRLRPIMMTTFAAILATLPIAIGFG 973

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             GG       I +  G+  +   +++I     + +
Sbjct: 974  AGGEARRPLGIAVVGGLAFSQFLTLYITPTFYVSM 1008


>gi|330981345|gb|EGH79448.1| acriflavin resistance protein [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 1036

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTNRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGRLRWVLKHQPLTLLVALATLALTVLLYIVVPKGFFPVQ 557



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 46.2 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I  +        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPEQAIYDAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   ++F    I L+      + +R
Sbjct: 997  LLSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|91788689|ref|YP_549641.1| acriflavin resistance protein [Polaromonas sp. JS666]
 gi|91697914|gb|ABE44743.1| acriflavin resistance protein [Polaromonas sp. JS666]
          Length = 1107

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 67/549 (12%), Positives = 156/549 (28%), Gaps = 34/549 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I   G+       +       FP                     L   
Sbjct: 9   RRPVATVLLTIGIALAGIGAFFVLPVSPLPQVDFPVIS--------------VSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +        +      +++L F  +R  +  A +V   +  
Sbjct: 55  SPDTMASSVATPLERRLGVIAGVNEMTSNSGTGSTRVSLQFDLNRSIDAAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    + N          + V+    +        +   E+      +I       
Sbjct: 115 SRADLPATLRSNPTYRKANPASAPVII-LALTSKTRSPGQIYDEVSNVVQQKIAQVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   L  +  E +P  L +   +   +       N ++           +    Q 
Sbjct: 174 DVELGGGSLPAVRVELNPFALNRYGVSMEDVRAALQASNANRPKGAIEG----NGQRLQI 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G+                   +                 +   +       
Sbjct: 230 YSGANTATGGLKAADYRG------------LVVAWRNGAALRLGDVAEVVDGVENTNTLG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         + + +   +   T++    L   L+A         V   +  +   S   
Sbjct: 278 LFNGSPAVIVLITRQPGANVIETVDGVRALLPELQAQLPQDVQLQVASDSTNSIRASLRE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+   +   +  ++   +  ++++ T  ++ LLG +L   S+  + 
Sbjct: 338 IELTLLISIALVVLVVSAFLRSARATVIPAVATIVSLLGTFGVMYLLGFSLNNLSLMALT 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E            F +  +G      T+   +++ +   + L F G
Sbjct: 398 VATGFVVDDAIVVLENTSRHIEAGMDRFKAALLGAREVGFTVLSISLSLVAVFIPLLFMG 457

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FA+T+  +++IS+  +++    M  ++++   +         R   IP  +
Sbjct: 458 GQTGRLFREFAVTLSAAVMISLLISLTTTPMMCAWMLKPTTVAGQARKRPGRLAFIPRWL 517

Query: 539 AIQFMRARF 547
              + R   
Sbjct: 518 ESAYQRVHR 526



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 82/253 (32%), Gaps = 16/253 (6%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   ++ ++  +            ++  +    + +     +  +  ++   +P     
Sbjct: 262 DVAEVVDGVENTNTLGLFNGSPAVIVLITRQPGANVIETVDGVRALLPELQAQLPQDVQL 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFF 711
                     R  +R+  + ++IS   +++ +          +      I+ +  T G  
Sbjct: 322 QVASDSTNSIRASLREIELTLLISIALVVLVVSAFLRSARATVIPAVATIVSLLGTFGVM 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   N  ++ A+    G+ V+D +VV +      +     +           E    
Sbjct: 382 YLLGFSLNNLSLMALTVATGFVVDDAIVVLEN---TSRHIEAGMDRFKAALLGAREVGFT 438

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW-- 826
            +  S++     +P+   GG        FA+ ++  ++++   S+    P++        
Sbjct: 439 VLSISLSLVAVFIPLLFMGGQTGRLFREFAVTLSAAVMISLLISL-TTTPMMCAWMLKPT 497

Query: 827 ------RAKNARI 833
                 R +  R+
Sbjct: 498 TVAGQARKRPGRL 510



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 86/222 (38%), Gaps = 8/222 (3%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             +      + Y   +    +     VK+   EI   + ++ +     + ++E   K  + 
Sbjct: 863  EDGELSTTISYNLAEGSTLSDAQAAVKQAEAEIRLPNNVRGSFAGSARDAQESQSKQPLL 922

Query: 673  VIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++ + + + I + I ++       + + +    +   L    LF ++F++ A+  +  LI
Sbjct: 923  ILAALVVIYIVLGILYESLIHPITVLSTLPSAGVGAVLALL-LFKMDFSIIALIGIFLLI 981

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G    + +++ D   +        ++    + ++        + T++AA +  LP+A+  
Sbjct: 982  GIVKKNAILIIDFALE--AERARGLTATQAVREACLLRFRPILMTTLAAILGALPLAIGF 1039

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              G  +     + +  G++ +   ++     + + +   R +
Sbjct: 1040 GEGAELRRPLGVSIIGGLIASQLLTLLTTPVVYVLLDKLRHR 1081


>gi|299140045|ref|ZP_07033215.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX8]
 gi|298598045|gb|EFI54213.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Acidobacterium sp. MP5ACTX8]
          Length = 1070

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/534 (13%), Positives = 130/534 (24%), Gaps = 33/534 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKEG-I 86
                +FP  +P             + +++        +  L       +   L     +
Sbjct: 29  TLPTSQFPEIVP-------------TEILITATYPGADSKTLSQAVATPIEQQLNGVDNM 75

Query: 87  GVFSMRQIQNKIT---LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
              +     N +    + F              L +    S+L        L  +     
Sbjct: 76  LYMNSVSANNGVVQLFVDFDVKTDPNIDQVLAQLRVDQAQSQLPAQVTTAGLTVSKAVAS 135

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +++   N           +   I    DQI   +   +          L    DP++L 
Sbjct: 136 PLMVVAVNSPGNKLSQDFLTNYAIINLQDQIARVKGVARVQVFGGQ-YALRVWVDPNKLA 194

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           QL  T  ++       NN       G   +R      Y V  K  +              
Sbjct: 195 QLGVTAPEVIQAIQTQNNVNPAGQIGAEPIRKGQKFTYTVRTKGRL-------------V 241

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
           K       I                 I                             +   
Sbjct: 242 KPEDFGKIILRANADGSILHLSDVARIELGDQAYAISGRFNQNPSGIMAIYELPGSNAVA 301

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T          L           +      A          T     GLV+IV+F+ +  
Sbjct: 302 TAAAVNARMKELAVTFPQGISYDIPLDTTKAVSSGIHEIVITLLEALGLVVIVVFIFLQG 361

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  L+   ++ +++I T  +   LG ++   S+ G+VL IGL VD  I+V E +     
Sbjct: 362 WRATLIPLLAVPVSLIGTFIIFPALGFSINTLSLFGLVLAIGLVVDDAIIVVEAVEHHID 421

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
           +      +           +    +      +   F  G   R +        +  + +A
Sbjct: 422 EGMEPKEATIKAMEEVGGPVVAIALILAAVFIPTAFIPGITGRLYQQFAVTIAISVLISA 481

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
            + +           K K            +       F R     V  S +  
Sbjct: 482 FNALTLSPALAALLLKPKDKQKK-AGILGKVFGIFNRFFGRTTDSFVRTSGVLI 534



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 67/179 (37%), Gaps = 9/179 (5%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           ++ +     + +      +T         E++   +  + +  I + I++     W   L
Sbjct: 310 MKELAVTFPQGISYDIPLDTTKAVSSGIHEIVITLLEALGLVVIVVFIFLQ---GWRATL 366

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             +  + + +  T   F   G   N  ++  ++  IG  V+D ++V + +          
Sbjct: 367 IPLLAVPVSLIGTFIIFPALGFSINTLSLFGLVLAIGLVVDDAIIVVEAV---EHHIDEG 423

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAAS 810
           +  ++   K++ E  G  V  ++      +P A   G        FA+ +A  ++++A 
Sbjct: 424 MEPKEATIKAMEEVGGPVVAIALILAAVFIPTAFIPGITGRLYQQFAVTIAISVLISAF 482



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 72/224 (32%), Gaps = 10/224 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +      +  ++  +     +         S      LE    +               
Sbjct: 805  QVHKTTGPEYIYRFNEFNAAQINISAKPGYSSGQVRAALEKTFAETMPPGAGYDYSGMSY 864

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               K  + +    + G+  S + + + +  +   W      + T  + I        +  
Sbjct: 865  QEDKAQKGVPSYAVFGL--SLLFVFLILAGLYESWTLPFSVLLTTPVAILGGYVALHIRL 922

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +E ++ A   V+ LIG S  + +++ +  + N   Y + +S  +    +        V T
Sbjct: 923  LENDIFATIGVVMLIGLSAKNAILIVEFAKAN---YESGMSISEAALSAAKLRFRPIVMT 979

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS-IFI 815
            ++A     LP+      G +        +  G++++ +   IFI
Sbjct: 980  ALAFIFGCLPLWTATGAGAASRRILGTVVIGGMLLSTAIGLIFI 1023


>gi|116253465|ref|YP_769303.1| RND family transmembrane transporter [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115258113|emb|CAK09214.1| putative RND family transmembrane transporter [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1108

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 74/669 (11%), Positives = 194/669 (28%), Gaps = 42/669 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  IG+            + RFP+                  +     
Sbjct: 9   RNPIAPLLAFCLLVFIGM-----QSFNTLPITRFPNIDVPLV---------SISVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    ++  + F      E         +  
Sbjct: 55  SPAELEMQVTKEIEDAVASITGIDEIQSTVTDGSSQTNVMFRMEVPTEQAVQDTKDAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    +  ++     +  +I     +         E S  +       +       
Sbjct: 115 IRSDLPATAEAPIVSKVDVEGQAIQTFAVSSPA--MSLEELSWFVDDTIKRSLQGQAGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E  P +L     T A ++      N         V     +     
Sbjct: 173 RVDRYGGAEREVRIELTPDKLNAYGITAASVNQQLRGTNIDLGSGRGQVAGSEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  +++   +      F   +   V+  +++E  +   F  T               
Sbjct: 233 DARNVADLANTTIGLPNGRFVKLSDLGVIKDTYEEPKSFSRFNDTP-------------- 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +   ++               P     + + +V    G+   
Sbjct: 279 -------VVTFGVFRSKGASEVSVAETVAQNLDKVRTENPNVKIELIDDSVYFTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  L++  ++ L+ I T  ++ ++G +L L S   + 
Sbjct: 332 AIHTLLEGALLAVIVVFLFLRNWRATLISAIALPLSAIPTFWVMDMMGFSLNLVSFLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    +  ++ + +           +  +  T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIKMGKTPYRAAIEAADEIGLAVIATTFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F +T+  S+  S+  A  I   M  +++R +       +           +
Sbjct: 452 GIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMRAEDGMEDHHDNDGLLMRGYTRL 511

Query: 539 AIQFMRARF--WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                   +  +   +     +    LL        +  +   ++ +    P +  +  +
Sbjct: 512 IRGTTGRWYTRYATLMVAFAFLVGSVLLLMQVPGSFLPPEDASRIVLSVELPPNARLDDT 571

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              +  I D        E  F++      GD   +   + +   K+ + +    + +   
Sbjct: 572 EKTTDAIYDRVKDINGVESVFVLGGASPKGDLELRRATITLALDKLDQSLVKKVVNDVLG 631

Query: 657 VGPKISREL 665
             P +   L
Sbjct: 632 DIPVVGPML 640



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 67/233 (28%), Gaps = 7/233 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       SF  F+        +    G S                    +       
Sbjct: 260 VIKDTYEEPKSFSRFNDTPVVTFGVFRSKGASEVSVAETVAQNLDKVRTENPNVKIELID 319

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +       I  ++  + +A+++       W   L +   L L    T     + G
Sbjct: 320 DSVYFTYGNYEAAIHTLLEGALLAVIVVFLFLRNWRATLISAIALPLSAIPTFWVMDMMG 379

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL +  A+    G  V+D +V  + +    +      +      ++ +E     + T
Sbjct: 380 FSLNLVSFLALTLATGILVDDAIVEIENI---ARHIKMGKTPYRAAIEAADEIGLAVIAT 436

Query: 776 SMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +       +P++   G        F + +AF +  +   +  I   +  ++  
Sbjct: 437 TFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMR 489



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 46/121 (38%), Gaps = 6/121 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + +L L I        L     ++  +  +L L+G    + +++ D   +  
Sbjct: 897  DVIQPFTILFSLPLAIGGVAAGLILTSNPLSMPVMIGILMLMGIVTKNAILLVDFAIEMR 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S  + + ++  +     + TS+A    +LP A+    GGS     AI +  GI
Sbjct: 957  HQ---GMSRVEAMVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGI 1013

Query: 806  V 806
            +
Sbjct: 1014 I 1014


>gi|16262933|ref|NP_435726.1| NolG efflux transporter [Sinorhizobium meliloti 1021]
 gi|17380412|sp|P25197|NOLG_RHIME RecName: Full=Nodulation protein nolG; Flags: Precursor
 gi|14523578|gb|AAK65138.1| NolG efflux transporter [Sinorhizobium meliloti 1021]
          Length = 1065

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/631 (11%), Positives = 179/631 (28%), Gaps = 52/631 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  MI  +GL         +  +D +P       +                   
Sbjct: 11  PVFATMMMVMILVLGLFS-----YGRLGVDHYPETDLPVVV---------VATTYTGASP 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    +   + +           + ++ + + F      ++ A +V   +  + 
Sbjct: 57  ESVESEISRPIEAALNTIGGIDTITSESYEGRSIVVVQFEVDVDSQDAAQEVRDRVARLE 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +K         +     +  +I+    +         E +    R   +++ +     Q 
Sbjct: 117 TKFPDGVATPQVTRYKPEGQAILSVAVSST--SRTLPEITTLATRVINNRLSVISGVGQV 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   Q+    DP RL       + +                         G     
Sbjct: 175 SLIGSSERQVLVVVDPDRLGAYGLAVSTVIEAIR--------------------GENQDR 214

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                ISGI+    T             I   +      +      I    A V      
Sbjct: 215 AAGTLISGINQRIVTVEGRIANTSGFNRIIVAQRNGYPVYLSEVATILDTGAEVTSLANY 274

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN-IVEERNVGADLGSDSIY 362
                           +            + L A      +   +   N        S  
Sbjct: 275 QGQTTLGLHIVKVQGANTVEVASAVRREVSALNAELTKDNVQLTITRDNSRPIASQVSQV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      L ++++F+ +   +  ++   ++ ++VI T A +  LG TL + ++  + L
Sbjct: 335 QRTLVEGGVLSVLIVFIFLNSWRSTVITGLTLPISVIGTFAAIYALGFTLNIMTLMALSL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+ +D  I+V E I    +  +    +   G +     +  + +  +   + + F GG
Sbjct: 395 SIGILIDDAIVVRENITRHLQMGKDPVRAALDGTNEIGLAVLSTTLCIVAVFLPVAFMGG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
              R    F +T+ ++++IS+F + ++   +       +  K+       +     D   
Sbjct: 455 LIGRFFLQFGVTVAVAVVISLFVSFTLDPMLSSVWCDPQSQKTAKRGFFGQLIERFDQWF 514

Query: 539 -----------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                         F   +     +  +F +  + +            +G + + + AN 
Sbjct: 515 EGLASRYRSVIYFTFDYRKTTIAIVLGMFVVSLLLVPRIGTEFLPPPDQGEVSISLEANE 574

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              L  + + +  ++     F       + +
Sbjct: 575 GASLDYMAAKVGQIERALREFNYVSSTYSTI 605



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 89/285 (31%), Gaps = 18/285 (6%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           I+     I               G           +D     ++L + Q       +   
Sbjct: 227 IVTVEGRIANTSGFNRIIVAQRNGYPVYLSEVATILDTGAEVTSLANYQGQTTLGLHIVK 286

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +                    E+ K  +   +     +       ++ R L+  G++ V
Sbjct: 287 VQGANTVEVASAVRREVSALNAELTKDNVQLTITRDNSRPIASQVSQVQRTLVEGGVLSV 346

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           +I  I +         W   +    TL + +  T       G   N+  + A+   IG  
Sbjct: 347 LIVFIFLN-------SWRSTVITGLTLPISVIGTFAAIYALGFTLNIMTLMALSLSIGIL 399

Query: 734 VNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           ++D +VV    R+N+  +               NE     + T++      LP+A  GG 
Sbjct: 400 IDDAIVV----RENITRHLQMGKDPVRAALDGTNEIGLAVLSTTLCIVAVFLPVAFMGGL 455

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPIL--LFIYDWRAKNAR 832
           +      F + +A  +V++   S F   P+L  ++      K A+
Sbjct: 456 IGRFFLQFGVTVAVAVVISLFVS-FTLDPMLSSVWCDPQSQKTAK 499



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 85/261 (32%), Gaps = 18/261 (6%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +   R  D       L       +            +    +   ++    + ++V    
Sbjct: 774  IATARMDDNGKPIMVLLDQVADVVESTAPAQITRKDLSRDIRISSNIEGRTLGDVVADLK 833

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAIT 698
              +  +       I     +  L       +  ++   + IYI +      +   +  I 
Sbjct: 834  AAMTKMDIPVGFRISFGGDAENLTESTAYALQSLAMAVIFIYIILASQFGSFIQPIAIIM 893

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLYTTS 754
            T+ L +   L      G   N+ ++  ++ L+G    + +++ D     +R+        
Sbjct: 894  TMPLSLMGVLLGLLFTGSTLNMFSMIGIMMLMGLVTKNAILLVDYSNLGVRE-------G 946

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
             S R  +  +    L   V T++A    +LP A+    GG+     A  +  G++ +   
Sbjct: 947  KSLRQSLADAGAVRLRPIVMTTLAMIFGMLPTALGLGEGGAQRAPMAHAIIGGLISSTLL 1006

Query: 812  SIFIAAPILLFIYDWRAKNAR 832
            S+     +L ++  +  +  R
Sbjct: 1007 SLVFVPVVLTYLDAFAGRVRR 1027


>gi|260598563|ref|YP_003211134.1| multidrug efflux system subunit MdtB [Cronobacter turicensis z3032]
 gi|260217740|emb|CBA32146.1| Multidrug resistance protein mdtB [Cronobacter turicensis z3032]
          Length = 1038

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/673 (10%), Positives = 181/673 (26%), Gaps = 45/673 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 17  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 62

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 63  PDVVTSAITAPLERQFGQMSGLKQMASQSAGGASVVTLQFQLTLPLDVAEQEVQAAINAA 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 123 TNLLPDDLPNPPVYSKVNPADPPIMT-LAVTSSALPMTQVEDMVETRVAQRISQVTGVGL 181

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L   +  +                         G    
Sbjct: 182 VTLSGGQRPAVRVKLNAQALASLGIDSETVRTAIT--------------------GANVN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+     ++                 + +       G  
Sbjct: 222 SAKGSFDGPERAVTLSANDQMKSADEYRNLIIAYKNGAPVRLGDVATVEQGAENAWLGAW 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ET   L   L           +          S +  
Sbjct: 282 ANKQPAIVMNVQRQPGANIITTAETIQKLLPQLTESLPKSVQVKLLTDRTTNISASVNDT 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T AL+  L  ++   ++  + +
Sbjct: 342 QFELMLAIALVVMIIYLFLRNIPATIIPAVAVPLSLVGTFALMVFLDFSINNLTLMALTI 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI    ++ +   + L F G 
Sbjct: 402 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTVSLIAVLIPLLFMGD 461

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ ++ ++  +    +   +I   IA
Sbjct: 462 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERVINRVIA 521

Query: 540 IQFM-------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                                   ++  +  +      + +   G IQ  + A + V  +
Sbjct: 522 RYGQLLKRVLNHPWLTLGVAFGTLALTVLLWVVIPKGFFPVQDNGIIQGTLQAPQSVSFA 581

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +     ++    +     +   +F+      P  + A+ ++         + V     +
Sbjct: 582 SMAERQRAVADIILKDPAVESLTSFVGVDGTNPSLNSARLQINLKPLDDRDDRVQTVITR 641

Query: 653 NTEIVGPKISREL 665
             E         L
Sbjct: 642 LQEAASRVPGATL 654



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 345 LMLAIALVVMIIYLFLR-NIPATIIPAVAVPLSLVGTFALMVFLDFSINNLTLMALTIAT 403

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  +++    ++P+   G
Sbjct: 404 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTVSLIAVLIPLLFMG 460

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 461 DIVGRLFREFAVTLAVAILISAVVSLTLTP 490


>gi|261364145|ref|ZP_05977028.1| inner membrane multidrug efflux protein BpeB [Neisseria mucosa ATCC
           25996]
 gi|288567732|gb|EFC89292.1| inner membrane multidrug efflux protein BpeB [Neisseria mucosa ATCC
           25996]
          Length = 1071

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/549 (11%), Positives = 151/549 (27%), Gaps = 43/549 (7%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF----LKK 83
               + ++PS                  + L           ++     +       ++ 
Sbjct: 28  RSLPVSQYPSVAAPT-------------ITLTATYPGASAQVMEDSVLAVIERNMYGVEG 74

Query: 84  EGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                 S        ++L+F     ++     V   L  V S L    ++  +  +  + 
Sbjct: 75  LDYMTTSANSSGSGSVSLTFTPETNEDLAQVDVQNKLSEVLSTLPSTVQQYGVTVSKARS 134

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
             + +   + +       E +    R  + ++   +   Q          +    DP +L
Sbjct: 135 NFLQVVMLSSE--KQSIEEMNDYAQRNIVPELQRIDGVGQVRLFGAQR-AMRIWVDPKKL 191

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           +    + A ++      N        G     +       V  + ++S            
Sbjct: 192 QNYNLSFATVTNALTAQNIQISAGSIGSLPAVEGQTISATVTAQGQLS------------ 239

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    I          +      +   +        L                +  
Sbjct: 240 -TAEEFGNIILVSNTDGSNVYLKDVAKVSLGMQDYSSSTRLNGVNTTGMAVMLSNSGNAL 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T        A+L+          +          S      T      LV +V+F+ + 
Sbjct: 299 ATATAVKEKMAVLQKYFPDGMSWKIPYDTSKFVDISIEKVIHTLLEAIVLVFLVMFLFLQ 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             ++ L+    + ++++   A +S +G ++ + ++  +VL IG+ VD  I+V E +    
Sbjct: 359 NIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENVERIM 418

Query: 443 RKNQSVFCSLDM----GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
                   +         S A   I    ++  +   +     G   + FA+TM  SI  
Sbjct: 419 ATEGLPPKAATKKAMGQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMAASIGF 478

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           S F A+++  A+         +K I                 +F        G       
Sbjct: 479 SAFLALTLTPALCAT-----MLKPIQKGHHEEKKGFFGWFNKKFDSWTHGYEGWVAKVLR 533

Query: 559 CSICLLFTH 567
            ++ ++  +
Sbjct: 534 KALRMMVVY 542



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 93/249 (37%), Gaps = 6/249 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   I +       V L  V      +Q    S +        +  +    G+++A    
Sbjct: 244 FGNIILVSNTDGSNVYLKDVAKVSLGMQDYSSSTRLNGVNTTGMAVMLSNSGNALATATA 303

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           ++     + +  P            K     I K I  ++ + + + + +++  +   + 
Sbjct: 304 VKEKMAVLQKYFPDGMSWKIPYDTSKFVDISIEKVIHTLLEAIVLVFLVMFLFLQNIRYT 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + +     F +  G+  N+  + A++ +IG  V+D +VV + +     + T 
Sbjct: 364 LIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMATE 421

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +  +    K++ +  G  +  +       +P+A++ G+       FA+ MA  I  +A 
Sbjct: 422 GLPPKAATKKAMGQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMAASIGFSAF 481

Query: 811 SSIFIAAPI 819
            ++ +   +
Sbjct: 482 LALTLTPAL 490



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 17/153 (11%)

Query: 689  KWYFALGAITTLILDITKTLGFF------ALFG----IEFNLTAVAAVLTLIGYSVNDKV 738
                A+  +  L L I   LG        AL G       ++      +T++G S  + +
Sbjct: 893  SIPLAVILVIPLGL-IGAALGVTGRNMFEALLGSIPAYANDIYFQVGFVTVMGLSAKNAI 951

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---G 795
            ++ +  +    L     S  +    + +      + TS A  + V+P+ V  G+      
Sbjct: 952  LIIEFAKD---LQAQGKSAIEAALAAAHLRFRPIIMTSFAFILGVVPLYVASGASSASQR 1008

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +    + +G+++    S+F+     + +  +  
Sbjct: 1009 AIGTTVFWGMLIGTILSVFLVPLFYVIVRKFFK 1041


>gi|153009761|ref|YP_001370976.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561649|gb|ABS15147.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Ochrobactrum anthropi ATCC 49188]
          Length = 1051

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 79/660 (11%), Positives = 184/660 (27%), Gaps = 29/660 (4%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
              + ++P   P                V      + +   +    +   + +       
Sbjct: 30  SLPIQQYPQITPPTV---------NVSAVYPGASAEVIADVVGGPLETAINGVDGMMYMS 80

Query: 89  FSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
            +        ++++F      E     V    Q   S+L     +  +   +     ++ 
Sbjct: 81  STSSNAGQYSLSVTFEVGTDPELAQINVQNRAQLAISRLPAAVAQQGVSVRSRSPDFVLG 140

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
                     +A+E +       +D I       +          +    +P R+  L  
Sbjct: 141 IAFYSPDDSLNALEITNFTTTTIVDAISRVPGVGEASVVGASEYSMRVWLNPQRMDALGI 200

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           T  ++S      N        G   +R     QY +  +  +                 +
Sbjct: 201 TVDEVSAAIQRQNIQATLGQAGAPPMRVGTELQYTLVAQGRLRDTD-------------E 247

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
               +        + F      +                       +     +   T   
Sbjct: 248 FGGIVIRTGADGAKVFLRDIARLELGARNYASRASFAGHESAMLQINQSPDANAIQTATA 307

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
                  L +         V          S  +   T      +VL+V F+ +   +  
Sbjct: 308 VQAELERLSSRFPSGLQYHVVYDATRFVEASLQLTARTLFEAFVIVLVVTFIFLQDWRAT 367

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE--ENRKN 445
           L++  +I  +++  +A+L  +G +L + S+  +VL IGL VD  ILV E ++   ++  +
Sbjct: 368 LISALAIPASMLGAVAVLLAVGYSLNMISLLALVLAIGLVVDDAILVVENVKHVLDDTPD 427

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFT 502
            SV  +      +    I  + +  L       F    GG   R FA+T+  ++++S F 
Sbjct: 428 ISVIEATRKAMHQITGPIISTTLVLLAVVTPTAFLEGIGGQLYRQFAVTISSALILSSFV 487

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A+++  A+   +++  +       PL+ F    +     + +   + V   I+     + 
Sbjct: 488 ALTLSPALAALLLKRGQG-GYKRGPLAWFSSFMEKTREGYGKIVGFMVKYWIVPVAGIVA 546

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                   +       +         VD+ +  +         +        +   V+  
Sbjct: 547 CFALAYFVFVNLPATFLPDEDQGALFVDIQLPSAASLDRTNLIVENVRKVLSETEGVQDV 606

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                                  +     + TE +        +R     V  + I++  
Sbjct: 607 ITVAGFSILQSTSTPNGAMAVAALTPWEDRETEALQLNNIINTLRAQFSQVPGANISVFA 666



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 74/191 (38%), Gaps = 7/191 (3%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               + A    LE +  +    +    + +         +   R      +I  +   I+
Sbjct: 301 AIQTATAVQAELERLSSRFPSGLQYHVVYDATRFVEASLQLTARTLFEAFVIVLVVTFIF 360

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     W   L +   +   +   +      G   N+ ++ A++  IG  V+D ++V + 
Sbjct: 361 LQ---DWRATLISALAIPASMLGAVAVLLAVGYSLNMISLLALVLAIGLVVDDAILVVEN 417

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
           ++ ++   T  IS  +   K++++  G  + T++     V P A     GG +   FA+ 
Sbjct: 418 VK-HVLDDTPDISVIEATRKAMHQITGPIISTTLVLLAVVTPTAFLEGIGGQLYRQFAVT 476

Query: 801 MAFGIVVAASS 811
           ++  +++++  
Sbjct: 477 ISSALILSSFV 487



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/203 (10%), Positives = 69/203 (33%), Gaps = 9/203 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +                        +E    G   ++ +   +  Y+++      W  
Sbjct: 837  QAMAAMEQVASEALPDGYGYEWSGLSFQESRSSGQEVIVFALAFLFAYLFLVAQYESWAL 896

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I +L   +   +     FG++ +L    A++ LIG +  + +++ +  ++      
Sbjct: 897  PAVVILSLGAALLGAVAALTFFGLQNSLYVQIAMVLLIGLAAKNAILIVEFAKE---KRE 953

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              ++  +       +     + T+++  + +LP+ +    G     +  + +  G++ A 
Sbjct: 954  AGLTAAEAARTGAEQRFRAVMMTAVSFILGILPLILSSGAGAGARQAVGVTIFGGMLAAT 1013

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
            +  + +   +   I     +  R
Sbjct: 1014 TIGLILTPGLYFVIQRLSERLGR 1036


>gi|107022273|ref|YP_620600.1| acriflavin resistance protein [Burkholderia cenocepacia AU 1054]
 gi|105892462|gb|ABF75627.1| acriflavin resistance protein [Burkholderia cenocepacia AU 1054]
          Length = 1102

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/583 (12%), Positives = 158/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAVNAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPAALKSNPTYRKVNPADSPIMV-VSLTSETASPAKVYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VTVSGSANPAVRVELEPQSLFHYGIGLEDVRAALASANANAP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEFGPQRFQLYTNDQASQASQYRDLVVAYRNGSAVRLSDLSDVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIETIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLRDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGKPRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++  +     +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLPEQHDPQSEGRFGRFLERGFARMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   +L  +     +  +   Y +  KG     
Sbjct: 515 RGYERSLSWALRRPLLILLTLFATIGLNVYLYIVVPKGFFPQQ 557



 Score = 84.7 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 66/192 (34%), Gaps = 6/192 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               RV   + +    +    T+         I   L       +I  ++ +++      
Sbjct: 295 ETIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLRDTEHTLLIAVSLVVMVVFLFLR 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + I  T G   L G   +  ++ A++   G+ V+D +VV + +    
Sbjct: 355 NWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIVATGFVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +                 E     +  S++     LP+ + GG V      FA+ ++  I
Sbjct: 412 RHIENGKPRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGIVGRLFREFALTLSLAI 471

Query: 806 VVAASSSIFIAA 817
            V+ + S+ +  
Sbjct: 472 AVSLAVSLTVTP 483



 Score = 43.1 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 94/215 (43%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + +I    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQIIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      + +    S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRNH--GKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGNGDGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G+V++   +++    + L++  +R
Sbjct: 1047 LRAPLGIAIAGGLVMSQVLTLYTTPVVYLYMDRFR 1081


>gi|330900287|gb|EGH31706.1| acriflavin resistance protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 994

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGRLRWVLKHQPLTLLVALATLALTVLLYIVVPKGFFPVQ 557



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495


>gi|318040545|ref|ZP_07972501.1| RND family multidrug efflux protein [Synechococcus sp. CB0101]
          Length = 1137

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 67/522 (12%), Positives = 143/522 (27%), Gaps = 33/522 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I   GL+       P   ++  P   P                     +
Sbjct: 10  RPVLTTVCSLLIVIAGLIAI-----PILPIENLPDIAPPTVK---------VRATYTGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++    I   S     + I+++F      +     V   +  
Sbjct: 56  AVSVEQGVTSVLEQQINGVENMDFITSSSSADGVSSISVAFNSGTDGDINQVNVQNRVAL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQIGISE 178
              +L  + +K  +         +++     +            S  +     D I   +
Sbjct: 116 AEPQLPEEVRKAGVSVNKASNSILLVYNFGSEDPEQVVYSPETISGLLDLNLTDAIKRVK 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                       +      DP +L     T+  +       N        G     +   
Sbjct: 176 GVGDLTYFGNRKLAFRLWLDPEKLTAYSLTSTDVVSQLTSQNRLVPAGQVGGEPSPEGQE 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + V+ +  +  +                 + +   E G                   +
Sbjct: 236 YTFTVQLQGRLRSVEEFEN------------LIVRSTEDGGLVRLRDVGRVELGGETYAV 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                             +  +          + A   A             N      S
Sbjct: 284 SATDKQGVPSVGLAVYQLSGSNALDVSSGVKKVLADFAATMPVGMKMEKIYDNTDFISAS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 +      LV+++LF+ +   K  LV   +I + ++ T AL+   G +L   ++ 
Sbjct: 344 IQGVVNSLRDAVVLVVLILFLFLQNWKATLVPGIAIPVALVGTFALVLGFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+VL  GL VD  I V E    +  +  S   +        +S +  +++      + + 
Sbjct: 404 GLVLATGLVVDDAITVIEDTSAKKAQGMSALQAAKSTMDELFSAVIATSLVKFAVFLPVL 463

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           FF    G   + FA T+  SI IS F A++    +   ++  
Sbjct: 464 FFPGATGTIYKQFAATVIFSIAISTFNALTFSPMLSALLLGR 505



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T      FG   N   +  ++   G  V+D + V   +     
Sbjct: 369 WKATLVPGIAIPVALVGTFALVLGFGFSLNQLTLFGLVLATGLVVDDAITV---IEDTSA 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
                +S       +++E     + TS+  F   LP+  + G    I   FA  + F I 
Sbjct: 426 KKAQGMSALQAAKSTMDELFSAVIATSLVKFAVFLPVLFFPGATGTIYKQFAATVIFSIA 485

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++  +++  +  +   +    ++ 
Sbjct: 486 ISTFNALTFSPMLSALLLGRESEP 509



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 73/238 (30%), Gaps = 9/238 (3%)

Query: 593  VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              +  L                   L R     G         + ++             
Sbjct: 886  EQQIPLAEFFTVKQVVGPSVVPHFNLYRSIKIEGTPAPGKSSGQAIQAMKRLFARQDAQG 945

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLG 709
                       E+    +  VI +   + +Y+ +      +   L  + T+   +   L 
Sbjct: 946  LGFDWTGISREEVKAGALAVVIFALGILAVYLVLAAQYESYSDPLIILMTVPTAMLGALI 1005

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
            F AL G   N+ A   ++ LIG +  + +++ D      +         D    + +  L
Sbjct: 1006 FLALRGEVLNVYAQVGLVMLIGLAAGNGILIVD---LANQRMAAGDPALDAARFAASSRL 1062

Query: 770  GRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               + T++++    +P+    G+      S    +  G+++A   S+F+     + + 
Sbjct: 1063 RPILMTAISSLFGFIPLVFASGAGARSQASLGAVVFGGLLIATVLSLFVVPVFYVVMK 1120


>gi|21233216|ref|NP_639133.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66770158|ref|YP_244920.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21115057|gb|AAM43034.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575490|gb|AAY50900.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1101

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 58/556 (10%), Positives = 154/556 (27%), Gaps = 40/556 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I  +G+L        Q  +   P     + +                 
Sbjct: 28  RRPIATSLLMAGILLLGIL-----GYRQLPVSALPEIDAPSLV---------VSTQYPGA 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R  +  A  V   ++ 
Sbjct: 74  NATTMASLVTTPLERQLGQISGLQMMTSDSSAGLSTIILQFSMDRDIDIAAQDVQAAIRQ 133

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 134 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDTLPLREVNRYADAILAQRLSQVPGVG 190

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 191 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 250

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  +                      +                  +   +       
Sbjct: 251 QLTDAAQ--------------------YRETIISYNNGAPVRLADVAKVVDGVENDQLAA 290

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   L+          V          S   
Sbjct: 291 WADGKPAVLLEIRRQPGANIVQTVEQIRSILPQLQGVLPADVHLDVFSDRTETIRASVHE 350

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T  +++  G +L   S+  +V
Sbjct: 351 VKFTLVLTIFLVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALV 410

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 411 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGARQIGFTVLSLTVSLVAVFLPLLLMP 470

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ISM  ++++   M  ++++   +   +             +
Sbjct: 471 GVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERAAAEGKTNL 530

Query: 539 AIQFMRARFWGVGISI 554
             + +      +   +
Sbjct: 531 WTRTVGVYERSLDWVL 546



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/255 (9%), Positives = 85/255 (33%), Gaps = 10/255 (3%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++        +    + +   +        +    V L+ +     
Sbjct: 249 NDQLTDAAQYRETIISYNNGAPVRLADVAKVVDGVENDQLAAWADGKPAVLLEIRRQPGA 308

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----IVGVIISAIAMLIYIW 685
              + +E ++  + ++  +        V    +  +           V+   + + +   
Sbjct: 309 NIVQTVEQIRSILPQLQGVLPADVHLDVFSDRTETIRASVHEVKFTLVLTIFLVVAVIFV 368

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
              + +  +     + L +  T G  A  G+  +  ++ A++   G+ V+D +V+ + + 
Sbjct: 369 FLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI- 427

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
             ++      S  +  +    +     +  +++     LP+ +  G        FA  ++
Sbjct: 428 --VRYIEQGKSGPEAAEIGARQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLS 485

Query: 803 FGIVVAASSSIFIAA 817
             +V++   S+ +  
Sbjct: 486 IAVVISMLVSLTLTP 500



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 92/234 (39%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L   ++ +        ++   V + +      + ++ +  +++   ++   + +    
Sbjct: 842  AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEQARADLKIPTQVHAEF 901

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +             +  ++ S + + I + + ++ +   L  I+TL       L    + 
Sbjct: 902  VGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMVC 961

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D   +  +   T ++  + I ++        + 
Sbjct: 962  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFAIEARR---TGVNAHEAIRRACLLRFRPIMM 1018

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA +  LP+A+    G  +     I +  G++++   +++    I L++  
Sbjct: 1019 TTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1072


>gi|196229908|ref|ZP_03128772.1| acriflavin resistance protein [Chthoniobacter flavus Ellin428]
 gi|196226234|gb|EDY20740.1| acriflavin resistance protein [Chthoniobacter flavus Ellin428]
          Length = 1048

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/552 (11%), Positives = 152/552 (27%), Gaps = 42/552 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L   +  +G+L           +   P                   +V    
Sbjct: 9   RRPIATTLLMVGVIIMGML-----GYFLLPISALPPVDFPT-----------IQVVAQYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    +     +                ITL F   R  +  A  V   +
Sbjct: 53  GASPDVMASSVTTPLERNFGQISGLSSMTSVSSFGNTTITLQFVLDRDIDGAAQDVQAAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
              +  L          +      + ++S   +        + + +       ++     
Sbjct: 113 NTASGVLPKGMPNPPTYSKVNPADTAIIS-LVLTSDTLPLEQVNDKADTILAQKLSEVSG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    +P+ +  L      +       N ++    F       + G 
Sbjct: 172 VGLVTIEGNQKPAVRVRINPAAIASLGTGLEDIRTALTNNNTNQPKGNFDGPKQSYAIGA 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                     T K   ++                 +   +  V  
Sbjct: 232 NDQI--------------------FTAKEYGEVIVAYKNGAPVRLRDIGQVVDGVENVRL 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +            +   +   T +    L   LR+   P     +          S 
Sbjct: 272 AGWVNGTPAVILDVQRQPGANIIETADRIKALLPKLRSMLPPTIKLEILADRTETIRASV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              + T  +   LV+ V+F+ +      ++   ++ L +I T  ++ L+G +L   S+  
Sbjct: 332 KDVQFTLILTVVLVVAVIFVFLRKFWATVIPSVALPLAIIGTFGVMKLIGFSLDNLSLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + +  G  VD  I++ E I            +   G  +   T+   +++ +   + L F
Sbjct: 392 LTISTGFVVDDAIVMIENIVRFIEMGDPPMEAALKGAKQIGFTVISLSVSLIAVFIPLLF 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R FAIT+ ++++ S F ++++   M   +++ ++ +       +   +   
Sbjct: 452 MTGIVGRLFREFAITLSIAVVASAFVSLTLTPMMCARLLKPEREEDQGRFYHATEKMFQS 511

Query: 537 CIAIQFMRARFW 548
            + +     ++ 
Sbjct: 512 MLNLYETGLKWV 523



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
              K++  +     L L I  T G   L G   +  ++ A+    G+ V+D +V+ + + 
Sbjct: 352 FLRKFWATVIPSVALPLAIIGTFGVMKLIGFSLDNLSLMALTISTGFVVDDAIVMIENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
             ++         +   K   +     +  S++     +P+    G V      FAI ++
Sbjct: 411 --VRFIEMGDPPMEAALKGAKQIGFTVISLSVSLIAVFIPLLFMTGIVGRLFREFAITLS 468

Query: 803 FGIVVAASSSIFIAA 817
             +V +A  S+ +  
Sbjct: 469 IAVVASAFVSLTLTP 483


>gi|189465460|ref|ZP_03014245.1| hypothetical protein BACINT_01813 [Bacteroides intestinalis DSM
           17393]
 gi|189437734|gb|EDV06719.1| hypothetical protein BACINT_01813 [Bacteroides intestinalis DSM
           17393]
          Length = 1056

 Score =  157 bits (396), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/678 (10%), Positives = 193/678 (28%), Gaps = 48/678 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVAIFGLFS-----LSKLPVDLYPDIETNTIM---------VMTSYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNSVSNLKHITSRSSENISVITLEFEYGYDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  + +  ++   +   I I+L     ++      +         ++ +       
Sbjct: 115 VSSQLPDEVETPIIFKFSTDMIPILLLSVQAEESQPALYKILD---DNIVNPLARVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     +   +S      N +  G  F V     S   + 
Sbjct: 172 TVSISGAPKREVNVYCDPNKLDAYNLSVETISSIISAENRNTPGGTFDVGNNTYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E++ I +                            +      I   +       
Sbjct: 232 EFKDPKEMANIVVGTH--------------------NGASVYLRDVAKIVDSVEERAQKT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +    +   L+          +        L +   
Sbjct: 272 YSNGVQGAMIVVQKQSGANSVAISQKVIDMLPQLQKSLPSDVKLGIIVNTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420
            + T       V++V+F+ +   +  ++   +I ++++ +   L ++   +L + S++ +
Sbjct: 332 LEETIMYAMLFVILVVFVFLGRWRATVIICITIPMSLVASFIYLGIIDGGSLNIISLSCL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD  I+V E +     +      +     +    ++  S +T +     L   
Sbjct: 392 SIAIGNVVDDAIVVLENVTTHIERGSEPKQAAVHATNEVAISVIASTLTMIAVFFPLTMV 451

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFL--- 533
            G +    R     M + + +S  +A+S    M    +   KK   + I           
Sbjct: 452 SGMSGVLFRQLGWMMCVIMTVSTISALSFTPMMCAQLLRLQKKQSKMFIAFYKPIQRGLD 511

Query: 534 ---IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              +     + +       + +       +      +            ++GV    P+ 
Sbjct: 512 ALDVWYQNRLNWAVRHRITIMVGCAAFFAASLFCAKYIGTEFFPAADNSRIGVKLQLPIG 571

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R+   + ++ D   + ++G          Q         + +     I+  + L +
Sbjct: 572 ARVERAQALASELTDKWMKRYEGVMKVCNYTVGQADSDNTFASMQDNGSHIISFNISLVS 631

Query: 651 IQNTEIVGPKISRELIRK 668
               ++    +  E+   
Sbjct: 632 PGERKVKLETVCDEMRED 649



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 76/241 (31%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +L  +            ++  +V +            V +         +P        
Sbjct: 794  KDLGKVVERSAPPTIERKDRERIVTVSAVISGVPLGDVVADGNAIIDKMDLPSGISIQIS 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + V+I  I + I +  +F+   +    + ++    +  L      
Sbjct: 854  GSYEDQQDSFADLGTLAVLI-IILVFIVMAAQFESLSYPFIIMFSIPFAFSGVLMALFFT 912

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ ++   + LIG  V + +V+ D +          ++    +  +    L   + 
Sbjct: 913  GTNLNVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGMAVLHSVVTAGRSRLRPVLM 969

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++   + ++PMAV    G  +     + +  G+ V+   ++ +   +         +  
Sbjct: 970  TTLTTILGMVPMAVGQGEGAEMWRPLGVAVIGGLTVSTILTLILVPVLYCSFAGVGIRRN 1029

Query: 832  R 832
            R
Sbjct: 1030 R 1030



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 91/250 (36%), Gaps = 8/250 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V   ++S++       +   +   +V  +    +SVA ++ +  +  ++ + +P 
Sbjct: 252 VYLRDVAKIVDSVEERAQKTYSNGVQGAMIVVQKQSGANSVAISQKVIDMLPQLQKSLPS 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                  +         I      ++ + + +++ +     +W   +    T+ + +  +
Sbjct: 312 DVKLGIIVNTSDNILNTIDSLEETIMYAMLFVILVVFVFLGRWRATVIICITIPMSLVAS 371

Query: 708 LGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +  +  G   N+ +++ +   IG  V+D +VV + +             +     + N
Sbjct: 372 FIYLGIIDGGSLNIISLSCLSIAIGNVVDDAIVVLENV---TTHIERGSEPKQAAVHATN 428

Query: 767 ETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++       P+  V G  G +       M   + V+  S++     +   +
Sbjct: 429 EVAISVIASTLTMIAVFFPLTMVSGMSGVLFRQLGWMMCVIMTVSTISALSFTPMMCAQL 488

Query: 824 YDWRAKNARI 833
              + K +++
Sbjct: 489 LRLQKKQSKM 498


>gi|288799654|ref|ZP_06405113.1| hydrophobe/amphiphile efflux-1 family protein [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288332902|gb|EFC71381.1| hydrophobe/amphiphile efflux-1 family protein [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 1074

 Score =  157 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/494 (12%), Positives = 142/494 (28%), Gaps = 38/494 (7%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKK-EGIG 87
              +++P+  P   +             ++          +       L   +   E + 
Sbjct: 31  LPTEQYPNIAPPTVM-------------VQASYPGANAQTVLNSVITPLEESINGVENMT 77

Query: 88  VFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
             +          I + F +    +     V   +   ++ L  +  ++ +     +   
Sbjct: 78  YMTSTATNDGGAGIIIYFKEGSDADMAQVNVQNRVTQASALLPAEVTQSGVHVAKRQNSQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +++     D+        +       +  I   +              +    DP++++Q
Sbjct: 138 VLILSLAGDKTKYDEQFLTNYADINVVPAIKRVKGVGNCQSFGSKTYTIRMWLDPAKMKQ 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
                + +       N        G       +    + E  +   G            K
Sbjct: 198 HNLIPSDLVGILAQQNIEAAPGSLG-------EQTNNMYEYTIRYKGR---------LQK 241

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    I   +   +         +                     + +  A  +    
Sbjct: 242 PEEFADMIISTDDSGQTLRVKDVAKVEMGALSYGAEMSSNGDPSVVMMITQSAGSNATQI 301

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
                 +    +    P     +          S      T      LV IV+++ +   
Sbjct: 302 ANDVKKVLEEQQKIMPPGMEFRIISDVTEFLDASIHHLLQTLIEAFILVFIVVYIFLQDF 361

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  LV   ++ +++I T   L++ G TL L +++ +VL I + VD  I+V E +  +   
Sbjct: 362 RSTLVPLVAVPVSLIGTFFFLNVFGFTLNLLTLSALVLAIAIVVDDAIVVVEAVHAKLDL 421

Query: 445 NQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISM 500
              S   +     +     I    +      V + F GG +    R F ITM +SI+IS 
Sbjct: 422 GYKSTKSATVDAMNEISGAIISITLVMASVFVPVSFMGGTSGTFYREFGITMAISIVISA 481

Query: 501 FTAISIVRAMMIFI 514
             A+++  A+   +
Sbjct: 482 VNALTLSPALSAVL 495



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 96/255 (37%), Gaps = 6/255 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   I     + + + +  V               +       ++  Q    ++      
Sbjct: 245 FADMIISTDDSGQTLRVKDVAKVEMGALSYGAEMSSNGDPSVVMMITQSAGSNATQIAND 304

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
           ++ V ++  +I+P            +     I   +  +I + I + I ++I    +   
Sbjct: 305 VKKVLEEQQKIMPPGMEFRIISDVTEFLDASIHHLLQTLIEAFILVFIVVYIFLQDFRST 364

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  +  + + +  T  F  +FG   NL  ++A++  I   V+D +VV + +   + L   
Sbjct: 365 LVPLVAVPVSLIGTFFFLNVFGFTLNLLTLSALVLAIAIVVDDAIVVVEAVHAKLDLGYK 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             S +     ++NE  G  +  ++      +P++  GG+       F I MA  IV++A 
Sbjct: 425 --STKSATVDAMNEISGAIISITLVMASVFVPVSFMGGTSGTFYREFGITMAISIVISAV 482

Query: 811 SSIFIAAPILLFIYD 825
           +++ ++  +   +  
Sbjct: 483 NALTLSPALSAVLLK 497



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/381 (8%), Positives = 102/381 (26%), Gaps = 32/381 (8%)

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            ++A       G     G   +M      S+    ++ +  +  + +  ++ +      ++
Sbjct: 674  ILAFPPPMVQGYSMTGGLTFSMQDRTGGSIDKFFNVTKNFIAELNKRPEITNAMTTFDTK 733

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN----------------YGID 574
            +      + +   +         +         ++    N                    
Sbjct: 734  YPQYMLDVDVARCKQSGISPKDILTTMQGYFSGMYASNFNAYGKLYRVYIQAAPNFRADV 793

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                            ++   +  ++     +   N     N   ++        A   +
Sbjct: 794  KSLNSIYVRTNKGMSPINEFVNLKQTFGPQSVERFNLYTAINVNAQVTDGYSSGEALNAL 853

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWY 691
             E+ K  + +         T       +          +I     + +Y+ +      + 
Sbjct: 854  NEVAKTSLPQGYSFDYSGLTRAEQESSNSTF-------MIFGLCLLFVYLILSAQYESYL 906

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I ++   +     F  LF    ++    A++ LIG    + +++ +   +     
Sbjct: 907  LPLSVILSIPFGLAGAFLFTLLFKNNNDIYMQIALIMLIGLLAKNAILIVEFALE---RR 963

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVA 808
             T ++            L   + TS+A  I +LP+ +  G               G+++ 
Sbjct: 964  RTGMAISWSAILGAGARLRPILMTSLAMIIGLLPLIIPNGVGYNGNMTLGAAAVGGMLIG 1023

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
                + +   +       + K
Sbjct: 1024 TLCQVIVVPALFYLFQSLQEK 1044


>gi|93007223|ref|YP_581660.1| acriflavin resistance protein [Psychrobacter cryohalolentis K5]
 gi|92394901|gb|ABE76176.1| acriflavin resistance protein [Psychrobacter cryohalolentis K5]
          Length = 1032

 Score =  157 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 84/667 (12%), Positives = 189/667 (28%), Gaps = 40/667 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N    ++L+ ++   G+         Q  + +FP       +           + L   
Sbjct: 11  KNPLVAILLFVLLTLGGIY-----GFMQMKVQQFPDIDLPAVV---------VTVTLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + ++       +++     +   F   +  +   D V   +  
Sbjct: 57  APSQLENDIAKKVENKLTSIEGVKHIRTTLQTGAATMVAEFVLEKDIQEAVDDVRSAVGE 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L       ++   +     +V      +    +  + S  +      ++       
Sbjct: 117 VRGDLPAAANDPIVTKVSTSGFPVVTYSVAAE--KMNVEDLSWFVDDTVTKRLSDIPGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    DP  L  L  +  ++S           G    V     +     
Sbjct: 175 TVSRIGGLQREITVAADPITLSGLKLSITQLSNQITGIQQDSSGGEAEVGKTTQTIRVLG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            VE   +++ + +   T                               I    A      
Sbjct: 235 AVERASDLNNLQVAVPT--------------------GGTQALGRMAQITDGAADPSSIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +     +     S    +E        L A    I +                 
Sbjct: 275 KLDGQTVVAFNITRSRGASEVEVMELVDAELTKLSADVGNISIEK-VYDRATPVAEDYQA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L ++V+F+ +   +   VA  ++ L+VI T   + L G +L + S+  + 
Sbjct: 334 SLRMLIEGGLLAVVVVFLFLRNIRATFVAAVALPLSVIPTFLGMYLFGFSLNIISLLALS 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I    R  ++ + +           +  +  T +   +   F G
Sbjct: 394 LVIGVLVDDAIVEVENIIRHLRMGKTPYEAAMEAADEIGLAVVATTFTLIAVFLPTAFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F  T  LSI  S+  A  I   M  +I++ +K      + L  ++L     
Sbjct: 454 GIVGQFFRQFGWTAALSIFASLMVARLITPMMAAYILKPEKKHVEKQSALMDWYLKVVSW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +           +  + S+  + LL T  +      +  + + +  +  +  +   + L
Sbjct: 514 TLDHRWMTMGATLVLFVASLGLVKLLPTSFIPDNDIDQTRVAIELTPDVALADTERVAAL 573

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            S +I  +             +       S  +   +  +   +       + Q  E   
Sbjct: 574 ASERILAMPEVTNIFTSVGEAQATMDSNSSGGKAENIAGLDIVLAPRAERGSKQEIERKM 633

Query: 659 PKISREL 665
             I  E+
Sbjct: 634 STILAEI 640



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 81/254 (31%), Gaps = 6/254 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           Q+ V       L  +    +         +            + +    V    +++   
Sbjct: 246 QVAVPTGGTQALGRMAQITDGAADPSSIAKLDGQTVVAFNITRSRGASEVEVMELVDAEL 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K++  V   +I+        ++ +      + +    +A+++             A   
Sbjct: 306 TKLSADVGNISIEKVYDRATPVAEDYQASLRMLIEGGLLAVVVVFLFLRNIRATFVAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T     LFG   N+ ++ A+  +IG  V+D +V  + +   ++      +  +
Sbjct: 366 LPLSVIPTFLGMYLFGFSLNIISLLALSLVIGVLVDDAIVEVENI---IRHLRMGKTPYE 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     V T+       LP A  G   G     F    A  I  +   +  I 
Sbjct: 423 AAMEAADEIGLAVVATTFTLIAVFLPTAFMGGIVGQFFRQFGWTAALSIFASLMVARLIT 482

Query: 817 APILLFIYDWRAKN 830
             +  +I     K+
Sbjct: 483 PMMAAYILKPEKKH 496



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 73/216 (33%), Gaps = 8/216 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                         +     +++ VK   +     ++I   +    +   EL    ++ + 
Sbjct: 798  DRERAISITVQPANGELGDLVQAVKSIPSMQQLPASITIIDQGQAENMAELFSGFVIAMS 857

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +  + +L  + + F +       +  L L I        +     ++ ++   + L+G +
Sbjct: 858  VGVVCILGVLILLFGRILQPFTILMALPLSIGGAFVGLVITNSSLSMPSMIGFIMLMGIA 917

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ D     +      ++  + I  +  +     + T++A    +LP+    G  
Sbjct: 918  TKNSILLVD---YALIAQRRGLARFEAIIDACRKRARPIIMTTIAMGAGMLPLVFGWGDA 974

Query: 794  ----IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                    A  +  G+V +   S+ +   +   + D
Sbjct: 975  DPTFRRPMAAAVLGGLVTSTLLSLVVIPVVYTLMDD 1010


>gi|110636958|ref|YP_677165.1| AcrB/AcrD family multidrug resistance protein [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110279639|gb|ABG57825.1| AcrB/AcrD family multidrug resistance protein [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 1048

 Score =  157 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 70/571 (12%), Positives = 163/571 (28%), Gaps = 35/571 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I  +G+L  +     Q  + ++P   P                      
Sbjct: 8   RPVLSIVISLIIVFLGVLSLV-----QLPVTQYPDIAPPVV---------AVTTKYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQG 121
            +     +    +   + +                I  + F      +  +  V   +  
Sbjct: 54  AEVCAKAVVTPLERAINGVAGMSYMTSVSGNDGTSIIQVYFQAGVDPDLASVNVQNRVTA 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  ++  +  K+ ++   E    ++                        + ++       
Sbjct: 114 VLEEMPEEVIKSGIIIEKEVNSMLMYLNILSSDSTIDEKFLYNFADINILAELKRINGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +     P R+     + A +       N        G    R S   QY
Sbjct: 174 FADIMGQREYSMRIWLRPDRMTVYDVSAADVIHSLREQNVEAAPGKIGESSGRKSQSLQY 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           ++    + +             K  +            +         I           
Sbjct: 234 VIRYTGKFT-------------KKEQYENIAIKASANGQILRLKDIAEIEFGSLDYDVLS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG-SLPIKLNIVEERNVGADLGSDS 360
                     I   +   + +  IE      A L+A    P     +          S  
Sbjct: 281 KENGRPSAAIILKQRPGSNASEVIENIKSKMAELKATSFPPGMEYTISYDVSRFLDASIH 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV IV+F+ +   +  ++   ++ +++I T   + +LG ++ L ++  +
Sbjct: 341 EVIKTLIEAFILVAIVVFIFLQDFRSTIIPIIAVPVSLIGTFFFMDMLGFSINLLTLFAL 400

Query: 421 VLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E +  +  + + +   +           I    +      + + F
Sbjct: 401 VLAIGIVVDDAIVVVEAVHVKMEKFHMNAREATHASMKEISGAIIAITLVMSAVFIPVAF 460

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLI 534
             G      R F+ITM ++I+IS   A+++  A+   +    + + K  +I   S +   
Sbjct: 461 MTGPVGVFYRQFSITMAIAIVISGVNALTLTPALSALLLKSHHGQKKKNNILTKSFYIFN 520

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLF 565
                + F       + ++       + L F
Sbjct: 521 KGFYNVTFKYQHLLTLVVNRKIVTFGLLLFF 551



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 85/243 (34%), Gaps = 12/243 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              SL    +S +N       +++ +     S     +   + +      P         
Sbjct: 270 EFGSLDYDVLSKENGRPSAAIILKQRPGSNASEVIENIKSKMAELKATSFPPGMEYTISY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +     I + I  +I + I + I ++I    +   +  I  + + +  T  F  + G
Sbjct: 330 DVSRFLDASIHEVIKTLIEAFILVAIVVFIFLQDFRSTIIPIIAVPVSLIGTFFFMDMLG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL  + A++  IG  V+D +VV + +   M+ +   ++ R+    S+ E  G  +  
Sbjct: 390 FSINLLTLFALVLAIGIVVDDAIVVVEAVHVKMEKF--HMNAREATHASMKEISGAII-- 445

Query: 776 SMAAFISVLPMA--VWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +         +    +      F+I MA  IV++  +++ +   +   +      
Sbjct: 446 -AITLVMSAVFIPVAFMTGPVGVFYRQFSITMAIAIVISGVNALTLTPALSALLLKSHHG 504

Query: 830 NAR 832
             +
Sbjct: 505 QKK 507



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 62/200 (31%), Gaps = 9/200 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            E +               T         E++    V VI     + +Y+ +      +  
Sbjct: 839  EAIVAINETAEKFLPKGYTFEWSGMTRDEILSGNQVTVIFIVCLIFVYLILAAQYESFIL 898

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I +L   I        L G++ N+ A  A++ LIG    + +++ +     +    
Sbjct: 899  PFAVILSLPTGIFGAYLLLYLLGLQNNIYAQVALVMLIGLLGKNAILIIEFA---LLKQK 955

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFGIVVAA 809
               +  +   +         + TS A    ++P+ +  G   I   +     A G+ +  
Sbjct: 956  EGKTPYEAAIEGAAARFRPILMTSFAFVAGLIPLMIASGAGAIGNRTIGTAGAGGMFIGT 1015

Query: 810  SSSIFIAAPILLFIYDWRAK 829
               + I   + +       +
Sbjct: 1016 ILGLVIIPGLYVVFATLDQR 1035


>gi|307315476|ref|ZP_07595034.1| acriflavin resistance protein [Sinorhizobium meliloti BL225C]
 gi|306898784|gb|EFN29441.1| acriflavin resistance protein [Sinorhizobium meliloti BL225C]
          Length = 1065

 Score =  157 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 72/631 (11%), Positives = 179/631 (28%), Gaps = 52/631 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  MI  +GL         +  +D +P       +                   
Sbjct: 11  PVFATMMMVMILVLGLFS-----YGRLGVDHYPETDLPVVV---------VATTYTGASP 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    +   + +           + ++ + + F      ++ A +V   +  + 
Sbjct: 57  ESVESEISRPIEAALNTIGGIDTITSESYEGRSIVVVQFEVDVDSQDAAQEVRDRVARLE 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +K         +     +  +I+    +         E +    R   +++ +     Q 
Sbjct: 117 TKFPDGVATPQVTRYKPEGQAILSVAVSST--SRTLPEITTLATRVINNRLSVISGVGQV 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   Q+    DP RL       + +                         G     
Sbjct: 175 SLIGSSERQVLVVVDPDRLGAYGLAVSTVIEAIR--------------------GENQDR 214

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                ISGI+    T             I   +      +      I    A V      
Sbjct: 215 AAGTLISGINQRIVTVEGRIANTSGFNRIIVAQRNGYPVYLSEVATILDTGAEVTSLANY 274

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN-IVEERNVGADLGSDSIY 362
                           +            + L A      +   +   N        S  
Sbjct: 275 QGQTTLGLHIVKVQGANTVEVASAVRREVSALNAELTKDNVQLTITRDNSRPIASQVSQV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      L ++++F+ +   +  ++   ++ ++VI T A +  LG TL + ++  + L
Sbjct: 335 QRTLVEGGVLSVLIVFIFLNSWRSTVITGLTLPISVIGTFAAIYALGFTLNIMTLMALSL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+ +D  I+V E I    +  +    +   G +     +  + +  +   + + F GG
Sbjct: 395 SIGILIDDAIVVRENITRHLQMGKDPVRAALDGTNEIGLAVLSTTLCIVAVFLPVAFMGG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
              R    F +T+ ++++IS+F + ++   +       +  K+       +     D   
Sbjct: 455 LIGRFFLQFGVTVAVAVVISLFVSFTLDPMLSSVWCDPQSQKTAKRGFFGQLIERFDQWF 514

Query: 539 -----------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                         F   +     +  +F +  + +            +G + + + AN 
Sbjct: 515 EGLASRYRSVIYFTFDYRKTTIAIVLGMFVVSLLLVPRIGTEFLPPPDQGEVSISLEANE 574

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              L  + + +  ++     F       + +
Sbjct: 575 GASLDYMAAKVGQIERALREFNYVSSTYSTI 605



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 89/285 (31%), Gaps = 18/285 (6%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           I+     I               G           +D     ++L + Q       +   
Sbjct: 227 IVTVEGRIANTSGFNRIIVAQRNGYPVYLSEVATILDTGAEVTSLANYQGQTTLGLHIVK 286

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +                    E+ K  +   +     +       ++ R L+  G++ V
Sbjct: 287 VQGANTVEVASAVRREVSALNAELTKDNVQLTITRDNSRPIASQVSQVQRTLVEGGVLSV 346

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           +I  I +         W   +    TL + +  T       G   N+  + A+   IG  
Sbjct: 347 LIVFIFLN-------SWRSTVITGLTLPISVIGTFAAIYALGFTLNIMTLMALSLSIGIL 399

Query: 734 VNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           ++D +VV    R+N+  +               NE     + T++      LP+A  GG 
Sbjct: 400 IDDAIVV----RENITRHLQMGKDPVRAALDGTNEIGLAVLSTTLCIVAVFLPVAFMGGL 455

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPIL--LFIYDWRAKNAR 832
           +      F + +A  +V++   S F   P+L  ++      K A+
Sbjct: 456 IGRFFLQFGVTVAVAVVISLFVS-FTLDPMLSSVWCDPQSQKTAK 499



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 85/261 (32%), Gaps = 18/261 (6%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +   R  D       L       +            +    +   ++    + ++V    
Sbjct: 774  IATARMDDNGKPIMVLLDQVADVVESTAPAQITRKDLSRDIRISSNIEGRTLGDVVADLK 833

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAIT 698
              +  +       I     +  L       +  ++   + IYI +      +   +  I 
Sbjct: 834  AAMTKMDIPVGFRISFGGDAENLTESTAYALQSLAMAVIFIYIILASQFGSFIQPIAIIM 893

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLYTTS 754
            T+ L +   L      G   N+ ++  ++ L+G    + +++ D     +R+        
Sbjct: 894  TMPLSLMGVLLGLLFTGSTLNMFSMIGIMMLMGLVTKNAILLVDYSNLGVRE-------G 946

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
             S R  +  +    L   V T++A    +LP A+    GG+     A  +  G++ +   
Sbjct: 947  KSLRQSLADAGAVRLRPIVMTTLAMIFGMLPTALGLGEGGAQRAPMAHAIIGGLISSTLL 1006

Query: 812  SIFIAAPILLFIYDWRAKNAR 832
            S+     +L ++  +  +  R
Sbjct: 1007 SLVFVPVVLTYLDAFAGRVRR 1027


>gi|316936149|ref|YP_004111131.1| acriflavin resistance protein [Rhodopseudomonas palustris DX-1]
 gi|315603863|gb|ADU46398.1| acriflavin resistance protein [Rhodopseudomonas palustris DX-1]
          Length = 1047

 Score =  157 bits (395), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 83/683 (12%), Positives = 189/683 (27%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    ++   ++  +G +      + +      P                   +     
Sbjct: 11  RHPLPSIVFSIILLALGWISFTKLAVTRLPSADIPVIS--------------VAVSQFGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ FA     +   + V   +  
Sbjct: 57  APAELEAQVTKTIEDGVSGVEGVRHIASSITDGLSVTTIQFALETNTDRALNDVKDAVTR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +  + L+       + IV              + S  +       +       
Sbjct: 117 VRANLPQNINEPLIQRVDVIGLPIVTYAAISPGKTPE--QLSWFVDDVVKRALQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RLR    T   +S      N    G    +     +     
Sbjct: 175 QVERIGGVEREILISLDPDRLRAAGLTALDVSRRLRGTNVDLAGGRAEIGNNDQAIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +++G  ++                                  +   +A      
Sbjct: 235 GARALNDLAGTMISLNA--------------------GGEVRLDDLGTVTDTIAARRTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S     E        L A    ++L +++  +V    G+   
Sbjct: 275 RFNGEPVVALGIKRSKGASDVVVAEAVQKRIDALAAQYPDVELKLIDT-SVDYTKGNYEA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  ++A  S+ L++      + +LG +L L S   I 
Sbjct: 334 AISTLFEGAILAVIVVFLFLRDFRATVIAAISLPLSIFPAFWAMDMLGFSLNLVSFLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A   I  + I        + 
Sbjct: 394 LSTGILVDDAIVEIENIVRHMRMGKSPYQAAIEAADEIGLAVIAISLTIIAIFAPASFMS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ + +  S+  A  +   +  + ++           + R +      
Sbjct: 454 GIAGQFFKQFGITVSVQVFFSLLAARFVTPVLAAYFLKDHPHVEKPPGKILRTYTSIVTW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV--VRS 596
           ++Q           +   SI SI LL    L      +  + + +     +  +     +
Sbjct: 514 SVQHYYITVLIGLGTFAASIWSIVLLPQGFLPAQDTARSVLAMQLPPGTQIGTTEKTTEA 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++ L+        F         +Q     S+      +  +      +     +  + 
Sbjct: 574 IVKLLRERPEVRSVFVDGGRVPPGVQEVRRASLIINYTPKSDRSITQRELEHEISKQLDQ 633

Query: 657 VGPKISRELIRKGIVGVIISAIA 679
           V       L   G+  + +    
Sbjct: 634 VPDIRYWFLDENGLRAIALVVTG 656



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + A   V L  + +  +++       +        L   + +    V     ++   
Sbjct: 246 MISLNAGGEVRLDDLGTVTDTIAARRTFARFNGEPVVALGIKRSKGASDVVVAEAVQKRI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P   ++  +                    + +A+++       +   + A  +
Sbjct: 306 DALAAQYPDVELKLIDTSVDYTKGNYEAAISTLFEGAILAVIVVFLFLRDFRATVIAAIS 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I        + G   NL +  A+    G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSIFPAFWAMDMLGFSLNLVSFLAITLSTGILVDDAIVEIENI---VRHMRMGKSPYQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     +  S+           + G  G     F I ++  +  +  ++ F+ 
Sbjct: 423 AAIEAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARFVT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PVLAAYFLK 491



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL       +    + +   + + F  +   +  + +L L I   +    L G +    
Sbjct: 839  AELSDGFATAISGGLMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIAALLLAGKQLTTP 898

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
                +L L+G    + +++ +   + M+   +  +    I  +  +     V T++A   
Sbjct: 899  VWIGILMLMGIVTKNAIMLIEFAMEAMRDGKSRDA---AIIDAGQKRARPIVMTTIAMVA 955

Query: 782  SVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + P A+    GG      A+ +  G++ +   S+     + + + D
Sbjct: 956  GMTPSALAFGAGGEFRSPMALAVIGGLIFSTVLSLIFVPAVFMMMDD 1002


>gi|260170362|ref|ZP_05756774.1| AcrB/AcrD/AcrF family multidrug resistance protein [Bacteroides sp.
           D2]
 gi|315918721|ref|ZP_07914961.1| multidrug resistance protein [Bacteroides sp. D2]
 gi|313692596|gb|EFS29431.1| multidrug resistance protein [Bacteroides sp. D2]
          Length = 1046

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 81/665 (12%), Positives = 186/665 (27%), Gaps = 50/665 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   GL+      L    ++++P   P                      
Sbjct: 9   RPIFSMVISVVILVAGLI-----GLYALSVEQYPDIAPPTIR---------VSTTYSGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   + +  +E  + ++       +       +IT+ F      +  A  V   +  
Sbjct: 55  AEAVQKSVIVPLEEAINGVENMTYMTSTASNTGSAEITVYFKQGSDPDMAAVNVQNKVST 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  K  + T   +   + +      +        +  +      QI       
Sbjct: 115 ATSLLPAEVTKVGVTTMKRQSSMLKIFGLYSPKGTYDETFLTNYLTINVKPQIQRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P  + Q     + +       N        G       +  QY
Sbjct: 175 EVNVMG-GDYAMRIWLKPDVMAQYELEPSDVETALSSQNIEASTGSIGE---DSKNVYQY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +                 +    +       R         +           
Sbjct: 231 TLKYRGRLETEQ-------------EFEEIVIKSYNDGRVLKLKDIATVELGAQSYSYTG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +  + +  A  + N  I         L+         +           S + 
Sbjct: 278 TVNGAPGSTCMINQTAGTNANEIITNIDKYLDELKETLPEDMEIVELMSTKNFLDASINE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   SIF+++I T A L + G ++ L ++  +V
Sbjct: 338 VIKTLLEAIILVVLVVYVFLQNPRSTLIPTISIFVSLIGTFAALYIAGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++    +   S + +     +   S +  S +  +   V + F 
Sbjct: 398 LAIGTIVDDAIIVVEAVQTRFDEGYRSPYKAAVDAMNGISSAVVTSTLVFMAVFVPVSFM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSI 523
           GG +      F ITM +S+ IS   A+++  A+   I                 +   + 
Sbjct: 458 GGTSGIFYTQFGITMAVSVGISAINALTLSPALCALILRPNEILVEGKKPEFSTRFRMAF 517

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           D                   R       + +   +    +  T       +  G I + +
Sbjct: 518 DSAFKRIVLKYKMGAKFLIKRKWLAWSSLGLAIILLCYLMSTTKTGLVPSEDTGSIFVSL 577

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A     L+   S ++ ++         D               S     ++++      
Sbjct: 578 DAPAGSTLAETASIMDKVEKELKEIPQIDNFNKVAGFGMGSGSGSSHGMFIIKLKHWDER 637

Query: 644 EIVPL 648
           +    
Sbjct: 638 QGEES 642



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    ++ + +  T     + G   NL  + A++  IG  V+D ++V + +    + 
Sbjct: 361 RSTLIPTISIFVSLIGTFAALYIAGFSINLLTLFALVLAIGTIVDDAIIVVEAV--QTRF 418

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
                S       ++N      V +++      +P++  GG+       F I MA  + +
Sbjct: 419 DEGYRSPYKAAVDAMNGISSAVVTSTLVFMAVFVPVSFMGGTSGIFYTQFGITMAVSVGI 478

Query: 808 AASSSIFIAAPI 819
           +A +++ ++  +
Sbjct: 479 SAINALTLSPAL 490



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/289 (10%), Positives = 80/289 (27%), Gaps = 7/289 (2%)

Query: 544  RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
                     +         ++     +   + +    + V  N  +        L     
Sbjct: 751  GYFGSIYASNFNRFTKLYRVIIQAPSDSRKNMQSLDNIFVKTNGGMAPVSQSVKLTKTYG 810

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
             +   +        +  +      S      +  V  +                  ++  
Sbjct: 811  AESLTRFNMFSSINVQGMPADGYSSGDVISAVTEVAAQTLPTGYGYEYSGMTREEEQMVN 870

Query: 664  ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
                  I GV I  I  LI   +    +  +  I ++   +  +  F  ++GIE N+   
Sbjct: 871  SHDTIIIYGVCILFIY-LILCALYESIFIPMAVILSVPFGLMGSFLFARMWGIENNIYLQ 929

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ LIG      +++ +   +        +S       +        + T++     +
Sbjct: 930  TGLIMLIGLLSKTAILLTEYATERRHA---GMSLTQAAMSAATVRFRPILMTALTMIFGM 986

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            LP+      G +   S  + +  G+++   + +F+     +       +
Sbjct: 987  LPLMFASGVGANGNRSLGVGVVGGLIIGTVALLFVTPAFFIVFQYIEER 1035


>gi|217976364|ref|YP_002360511.1| acriflavin resistance protein [Methylocella silvestris BL2]
 gi|217501740|gb|ACK49149.1| acriflavin resistance protein [Methylocella silvestris BL2]
          Length = 1094

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 83/619 (13%), Positives = 166/619 (26%), Gaps = 42/619 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ + I   G L  L   +       FP+                    L   
Sbjct: 9   RRPVATILIAAGIGLAGALGFLNLPVAPLPQVDFPTIA--------------VSATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +     +             Q  ITL F   R     A  V   +  
Sbjct: 55  SPETVASSVASPLERSLGQIAAVTEMTSRSTIGQATITLQFDIDRDINGAARDVQGAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    + N          + +L    +      A +           ++   E   
Sbjct: 115 ARADLPTSLRSNPTYRKINPADAPILL-LGLTSKTKTAGQIYDIATNILQPRLSQIEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   +   L  +  E +P  L +       +                         G   
Sbjct: 174 QASLAGSALPAVRVEINPHALSKYGIGLEDVRAALA--------------------GANA 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                             N          ++                 +   +  + +  
Sbjct: 214 NSPKGSIEGDDRHFQIYTNDQANVAADYRNLVIAYRDGAPVRLSDVAEVLDSVEDLRNEG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++        + S +   +   T++T       LRA        IV          S   
Sbjct: 274 LINGKTGVLVVISPEPGANIIRTVDTIKAELTHLRAAMPADIDMIVTGDRSNTIRASVQD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV +++F+ +   +   V      L++I     + L G +L + S+  + 
Sbjct: 334 TEQTLLFSIALVTLIVFLFLRDWRSASVPAVVTPLSIIGAFGAMYLAGFSLNILSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I     +      +   G      T+   +++ +   + + F G
Sbjct: 394 IATGFVVDDAIVVLENIARHIEEGARPLEAALAGAREVGFTVISISVSLIAVFIPILFMG 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIF-IIRYKKMKSIDINPLSRFFLIPDC 537
           G      R FA+T+  +I+IS+  ++++   M    +     M            L    
Sbjct: 454 GIIGRLFREFALTLTFAIIISLVLSLTLTPMMCALVLKARPVMARASRRFDPFAALQRGY 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID---FKGGIQLGVLANRPVDLSVV 594
                   R  G  +  LF+   + +     +  G       G I   ++A++ +    +
Sbjct: 514 GRTLGWALRHSGFVMLALFATICLNISLFTIIPKGFFPQVDTGRIMGSIVADQSISFQAM 573

Query: 595 RSNLESLQIGDISFQNFDG 613
           R  L  LQ           
Sbjct: 574 REKLRQLQDIVQRDPAVSS 592



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 82/264 (31%), Gaps = 7/264 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                 ++T+           + +      PV LS V   L+S++               
Sbjct: 223 DDRHFQIYTNDQANVAADYRNLVIAYRDGAPVRLSDVAEVLDSVEDLRNEGLINGKTGVL 282

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +V       + +     ++     +   +P               R  ++     ++ S 
Sbjct: 283 VVISPEPGANIIRTVDTIKAELTHLRAAMPADIDMIVTGDRSNTIRASVQDTEQTLLFSI 342

Query: 678 IAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             + LI       W  A        L I    G   L G   N+ ++ A+    G+ V+D
Sbjct: 343 ALVTLIVFLFLRDWRSASVPAVVTPLSIIGAFGAMYLAGFSLNILSLMALTIATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +VV + +    +         +       E     +  S++     +P+   GG +   
Sbjct: 403 AIVVLENI---ARHIEEGARPLEAALAGAREVGFTVISISVSLIAVFIPILFMGGIIGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
              FA+ + F I+++   S+ +  
Sbjct: 460 FREFALTLTFAIIISLVLSLTLTP 483



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 70/159 (44%), Gaps = 8/159 (5%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +  A+ I + I ++ +     I + +    +   L   A F +EF++ A+  V+ LIG
Sbjct: 916  LAALAAVYIVLGILYESFIHPITILSTLPSAGVGAVLALLA-FHLEFSVIAMIGVILLIG 974

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                + +++ D         +  +S R+ I ++        + T+ AA +   P+A+   
Sbjct: 975  IVKKNAIMMID--FALAAERSRGLSPRESIFEASMLRFRPIMMTTFAAILGAAPLALSAG 1032

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             G  +     + +  G++V+   +++    + L++  +R
Sbjct: 1033 EGAELRRPLGVAIVGGLIVSQMLTLYTTPVLYLYMDRFR 1071


>gi|209885307|ref|YP_002289164.1| AcrB protein [Oligotropha carboxidovorans OM5]
 gi|209873503|gb|ACI93299.1| AcrB protein [Oligotropha carboxidovorans OM5]
          Length = 1059

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 76/686 (11%), Positives = 175/686 (25%), Gaps = 48/686 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC IG +       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVIALFICLIGAISI-----PLLAIAQYPIIAPP-------------SIAIGTSY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L       +   L            S    + +I  +F         +  V  
Sbjct: 50  PGASPEELYNSVTRLIEEELNGASGILNFESTSDSLGEVEILANFQPGTDTTIASVDVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ V ++L     +  ++        + +            +     ++R  + +I   
Sbjct: 110 RIKRVEARLPPAVIQQGILVEEASSAMLQIITLRSTDGSLDEVALGDFMVRNVMGEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +L     T+  ++      N        G        
Sbjct: 170 PGVGRAKLY-STEQSLRIWVDPEKLIGYNLTSDDVTKAIAAQNAQVASGSLGAEPSVRGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  K ++S                +    +                 I       
Sbjct: 229 KVSALVLVKGQLS-------------TPDEFGSIVLHANADGSVVRLRDVARIEIGGMGY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 QFTTRLNGKPTAGLSVMLAPTGNALATAAAVEAKMKELSKFFPANIAYDIPYNITPVVNA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +    T A    LV IV+F+ +   ++  +    + + ++   A L L G ++ + ++
Sbjct: 336 AITKVLQTLAEAVVLVFIVMFLFLQNIRYTFIPTIVVPVALLGACAALLLFGYSINMLTL 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +V+ IG+ VD  I+V E +      +      +     ++    I    +  +   V 
Sbjct: 396 FAMVMAIGILVDDAIVVVENVERIMVEEGLPPKEATRKAMTQITGAIIGITLVLMAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
           + FF G      R F++TM  +I  S   A+S+  A+   +          ++       
Sbjct: 456 MAFFPGSVGIIYRQFSVTMVAAIGFSALMALSLTPALCATLLKPPKAGHSIRRKGVFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +        I          G  + +  ++ +        +  G           +  
Sbjct: 516 NNTLDTTRGQYIKTVSWSLARKGRVMIVYVAVVAAVGFTFSRMPGGFLPIDDQGFITVDV 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    S       +++  +   +  DG ++      +        T    +  K  +E  
Sbjct: 576 QTPSNSSFERTRAAVESVEQYLETRDGIQDVTFLTGFSFLGQGINTAQAFITLKDWSERG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
              + +       K    +    I  
Sbjct: 636 AKDSAEAIVNDINKHMARVRDAKITA 661



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 90/241 (37%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V            + +        L  +    G+++A    +E   K++++  P 
Sbjct: 260 VRLRDVARIEIGGMGYQFTTRLNGKPTAGLSVMLAPTGNALATAAAVEAKMKELSKFFPA 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
           +   +       +    I K +  +  + + + I +++  +   +       + + +   
Sbjct: 320 NIAYDIPYNITPVVNAAITKVLQTLAEAVVLVFIVMFLFLQNIRYTFIPTIVVPVALLGA 379

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                LFG   N+  + A++  IG  V+D +VV + +     +    +  ++   K++ +
Sbjct: 380 CAALLLFGYSINMLTLFAMVMAIGILVDDAIVVVENV--ERIMVEEGLPPKEATRKAMTQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +  ++      +PMA + GSV      F++ M   I  +A  ++ +   +   + 
Sbjct: 438 ITGAIIGITLVLMAVFVPMAFFPGSVGIIYRQFSVTMVAAIGFSALMALSLTPALCATLL 497

Query: 825 D 825
            
Sbjct: 498 K 498



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 80/238 (33%), Gaps = 7/238 (2%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L S    +                    G++ A     + + +       L      E  
Sbjct: 796  LSSFATIEWGVGPSQIAGFNYYPTVRISGEAKAGFTSGDAIAEMERLADLLPRGFGYEWS 855

Query: 658  GPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
            G  +  +L   +    + +S + + + +   ++ W   +  + T+ L +  ++   +L G
Sbjct: 856  GQSLQEKLSGSQAPFLLALSVLVVFLCLAALYESWTIPIAVLLTIPLGLLGSVVASSLRG 915

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +   +     ++T+IG +  D +++ +  +          S      ++ +      + T
Sbjct: 916  LPNGVYFTVGLITIIGLAAKDAILIIEFAKD--LREKEGKSLLTATLEACHLRFRPILMT 973

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              A    VLPM V    GG    +    +  G++  A  ++ +     +FI     K 
Sbjct: 974  GFAFVCGVLPMVVAHGAGGLSQQALGTGVMGGMIAVAILALLMVPVFFVFIQGLFEKP 1031


>gi|148262890|ref|YP_001229596.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
 gi|146396390|gb|ABQ25023.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
          Length = 1036

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 60/615 (9%), Positives = 173/615 (28%), Gaps = 51/615 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   +  +G+         +  ++ FP+                        
Sbjct: 9   KRPIFATVMILALVVLGIFS-----YRRLSVEMFPNVEFPIV---------SVITTFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   L    +E  + +        + R+  + + + F       + A +V   +  
Sbjct: 55  SPETVERELSKRIEEAVNQVAGVKHVFSTSRESVSSVVVEFRLEEKVNDAAQEVRAKISS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L    ++ ++         +  +   +      A E +  + ++   +        
Sbjct: 115 IRGTLPTGIEEPIIQKMDFNAAPV--AALAVQSSTLSARELTTLVEKKVKKRFESVAGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  + DP+RL  L      +       N +                   
Sbjct: 173 KVDMIGGQKREINVDLDPTRLDSLGLGVNDVVNGIKSENTNTPLGR-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G           P        +   +   R         +   +       
Sbjct: 219 ------ITRGTAEYPLRIEGKPDRADLYRQMVVVQRNGRPIALGEVARVSDGVEEKRKLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++            ++  +    ++T   + A ++    P     +          S + 
Sbjct: 273 LVNGQPAIGLDIYKQSGGNQVELVDTVKKVMAKVQKEMPPGVTISLVRDGSIMTRESLAD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  I   L ++++F  +   +  ++   ++ ++VI +  +++ LG TL + ++  + 
Sbjct: 333 VKETLIIGGILTVLIVFCFINSWRSTVITGVTLPISVISSFIVMNALGMTLNVMTLMALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ +D  I+V E I       +    +   G S     +F ++++ +   + + F  
Sbjct: 393 LAIGMLIDDAIVVRENIVRHLEMGKDHMEAARFGTSEIGLAVFATSMSIIAVFIPVAFMK 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------------IDIN 526
              G     F I++  ++L+S+F + ++   +                         +  
Sbjct: 453 GIVGRFFYQFGISVAFAVLVSLFVSFTLDPMLSSRWHDPSIHLQGRRKGIARLLEIFNNW 512

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      I       +         F    +            + KG  Q+     
Sbjct: 513 FDKSADKYRGAIGWALDHRKTVMALAFASFVAGIMIFGSLESSFMAPEDKGEFQISFKTA 572

Query: 587 RPVDLSVVRSNLESL 601
               ++   + + ++
Sbjct: 573 PDASMAETENRMNAV 587



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 66/173 (38%), Gaps = 17/173 (9%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +LI       W   +    TL + +  +       G+  N+  + A+   IG 
Sbjct: 338 IIGGILTVLIVFCFINSWRSTVITGVTLPISVISSFIVMNALGMTLNVMTLMALSLAIGM 397

Query: 733 SVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+ +         +      +E       TSM+     +P+A   G
Sbjct: 398 LIDDAIVV----RENIVRHLEMGKDHMEAARFGTSEIGLAVFATSMSIIAVFIPVAFMKG 453

Query: 792 SVIG---SFAIPMAFGIVVAASSSIFIAAPIL--------LFIYDWRAKNARI 833
            V      F I +AF ++V+   S F   P+L        + +   R   AR+
Sbjct: 454 IVGRFFYQFGISVAFAVLVSLFVS-FTLDPMLSSRWHDPSIHLQGRRKGIARL 505



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 53/118 (44%), Gaps = 3/118 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++++ + + + +  +F+ +F  L  + +L L I    G   L G   N+ ++  ++ L+
Sbjct: 863 SLLLAVLFVYLILAAQFESFFEPLAIMLSLPLSIVGMAGMLKLTGDTVNIMSLIGLIMLM 922

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           G    + +++ D  +  +      +  RD +  +    L   + T++A    ++P+  
Sbjct: 923 GLVTKNAILLVDYAK--VLQRRDGMKRRDAVILAGRTRLRPIIMTTLAMIFGMMPLFF 978


>gi|325928817|ref|ZP_08189984.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
 gi|325540790|gb|EGD12365.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
          Length = 1082

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 59/564 (10%), Positives = 159/564 (28%), Gaps = 40/564 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +  +G+L        Q  +   P     + +                 
Sbjct: 9   RRPIATSLLMAGVLLLGIL-----GYRQLPVSALPEIDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R  +  +  V   ++ 
Sbjct: 55  NATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMERDIDIASQDVQAAIRQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 115 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDSLPLREVNRYADAILAQRLSQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  +                      +        R         +   +       
Sbjct: 232 QLTDAAQ--------------------YRETIISYKDGRPVRLADVAKVVDGVENDQLAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   LR+         V          S   
Sbjct: 272 WADGKQAVLLEIRRQPGANIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T  +++  G +L   S+  +V
Sbjct: 332 VKFTLVLTIALVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ISM  ++++   M  ++++   +   +             +
Sbjct: 452 GVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERATAAGKTNL 511

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
             + + A    +   +     ++ 
Sbjct: 512 WTRTVGAYERSLDWVLAHQPLTLG 535



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/256 (10%), Positives = 93/256 (36%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++ +      +    + +   +        +    V L+ +     
Sbjct: 230 NDQLTDAAQYRETIISYKDGRPVRLADVAKVVDGVENDQLAAWADGKQAVLLEIRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I+ +  +I++
Sbjct: 290 NIVQTVEQIRNILPQLRSVLPADVHLEVFSDRTETIRASVHEVKFTLVLTIALVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   +     + L +  T G  A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S  +  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGPEAAEIGAKQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 466 SIAVVISMLVSLTLTP 481



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 89/234 (38%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L   ++ +        ++   V + +      + ++ +  ++K   E+   + +    
Sbjct: 823  AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEKAREELKIPTQVHAQF 882

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +             +  ++ S + + I + + ++ +   L  I+TL       L    L 
Sbjct: 883  VGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMLC 942

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D     +       S  D I ++        + 
Sbjct: 943  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFA---IDARREGASAHDAIRRACLLRFRPIMM 999

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA +  LP+A+    G  +     I +  G++++   +++    I L++  
Sbjct: 1000 TTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1053


>gi|172039559|ref|YP_001806060.1| preprotein translocase subunit SecD [Cyanothece sp. ATCC 51142]
 gi|171701013|gb|ACB53994.1| protein export membrane protein [Cyanothece sp. ATCC 51142]
          Length = 470

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 147/516 (28%), Positives = 220/516 (42%), Gaps = 78/516 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+    L+     +    + +                 +    + LGLDLRGG+ L +++
Sbjct: 1   MKQRRLLIGFIIALVIGAIAL-----------------LNTIPLQLGLDLRGGAQLTIQL 43

Query: 61  ----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKV 115
               D        L+     L++ +   G+    ++   Q+KI +        E     +
Sbjct: 44  KPTEDVQTISQEDLEAAKTVLQNRVDGLGVAEPVVQTLGQDKIVVQLPGVTDPEQAERVL 103

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    +     +  L V                       I Q  E     ++ + 
Sbjct: 104 GGTAQLEFRQQRQGTEGQLPVEFN--------------------IRQQKEAE---LEALR 140

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             E T +       L +   E + + L             K       +G  + V    D
Sbjct: 141 QGEPTPEEEQRIAELTESIEESNQALLALFESVGLSGKNLKNARYGPTQGTEWEVIIDFD 200

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           ++G Q   E    I+G   +      D     PVV   F   G                 
Sbjct: 201 NEGGQKFAELTKNIAGTGRSIGIFLDDVLISAPVVGPQFAAAG----------------- 243

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                           I  G A I+GNFT ETA  LA  LR GSLP  + +VE R VGA 
Sbjct: 244 ----------------ITGGSAVITGNFTAETANELAVQLRGGSLPFPVEVVENRTVGAT 287

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI +   A VAGLVL+++FM V Y   G++AD ++ +  +LTLA  SL+G TLTLP
Sbjct: 288 LGRDSIRRSIYAAVAGLVLVLIFMGVYYRLPGVLADLALAIYTLLTLACYSLIGVTLTLP 347

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAG +L IG+AVD+N+L+ ER REE R  ++++  ++ GF RA+S+I DSN+T LIA  
Sbjct: 348 GIAGFILSIGMAVDANVLIFERTREELRSGKTLYSGVESGFYRAFSSIIDSNVTTLIACG 407

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            LF  G G V+GFA+T+ + +L+SMFTA++  R  +
Sbjct: 408 ALFGLGSGLVKGFALTLAIGVLVSMFTALTCTRTFL 443



 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 92/225 (40%), Gaps = 4/225 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+ + I                      G+  A+T     V+ +   +     +     V
Sbjct: 225 LDDVLISAPVVGPQFAAAGITGGSAVITGNFTAETANELAVQLRGGSLPFPVEVVENRTV 284

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ IR+ I   +   + +LI++ + ++    + A   L +    TL  ++L G+ 
Sbjct: 285 GATLGRDSIRRSIYAAVAGLVLVLIFMGVYYRLP-GVLADLALAIYTLLTLACYSLIGVT 343

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++   +  +    ++          + +++
Sbjct: 344 LTLPGIAGFILSIGMAVDANVLIFERTREELR---SGKTLYSGVESGFYRAFSSIIDSNV 400

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +   G  ++  FA+ +A G++V+  +++      LL 
Sbjct: 401 TTLIACGALFGLGSGLVKGFALTLAIGVLVSMFTALTCTRTFLLV 445


>gi|116070726|ref|ZP_01467995.1| SecD export membrane protein [Synechococcus sp. BL107]
 gi|116066131|gb|EAU71888.1| SecD export membrane protein [Synechococcus sp. BL107]
          Length = 495

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 131/523 (25%), Positives = 222/523 (42%), Gaps = 61/523 (11%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV----N 67
                + L IA   FL ++ L+            LGLDLRGGS L ++V     +    +
Sbjct: 7   WFAFVLALAIAAGMFLLRTPLE------------LGLDLRGGSQLTVQVQPAGEITRVGS 54

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKL 126
             ++     L   +   G+   +++ + +  + L     +     A  +           
Sbjct: 55  EEMEAVKAVLERRVNGLGVAESTLQTVGDTQLVLQLPGEQDPTRAARVLGSTAMLEFRAQ 114

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
               + +L                   + +     Q   I+R R       E  +     
Sbjct: 115 KPGAEGDL-------------------RSLRQLRSQVRAILRLRE------EQALNGDID 149

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
               I      +  +L  L G     +             +          G   +   +
Sbjct: 150 DNDGIDFDQLAEAQKLFGLDGEATSETDQLQQLLEKVNEEIVQQFEPAALTGKDLVTAGR 209

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
             +                +   V +SF+  GA  F E+T+   G    + +        
Sbjct: 210 QPL------------QNNPNSWEVTLSFNSDGAEAFAELTKSIAGTDRLLGIVLDGQAIS 257

Query: 307 VINQAIP-------SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +            G A ISGNFT E A  L   LR GSLP+ + I+E R +G  LG++
Sbjct: 258 EASVGPQFEAAGISGGAASISGNFTAEEARELEVQLRGGSLPLPVEIIEVRTIGPTLGAE 317

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +I +   A ++GL  + +FM++ Y   G VA  ++ L  +  LA+ +L+  TLTLP IAG
Sbjct: 318 NIRRSLVAALSGLAFVAVFMVLAYRLPGAVAVVALSLYALFNLAMYALIPVTLTLPGIAG 377

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +L IG+AVD+N+L+ ERI++E R+  ++  S+D GFS A+S+I D ++T LI+   LFF
Sbjct: 378 FILSIGMAVDANVLIFERIKDELRRGNTLIRSIDTGFSEAFSSIVDGHLTTLISCAALFF 437

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            G G V+GFA T+G+ +L+S+FTA++  R ++ F++ Y  ++S
Sbjct: 438 LGTGLVKGFAATLGIGVLLSLFTALTCTRTLLRFLMGYSGLRS 480



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 78/176 (44%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E IR+ +V  +     + +++ + ++   A+ A+  L L     L  +AL  
Sbjct: 309 TIGPTLGAENIRRSLVAALSGLAFVAVFMVLAYRLPGAV-AVVALSLYALFNLAMYALIP 367

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++      +    ID   +E     V  
Sbjct: 368 VTLTLPGIAGFILSIGMAVDANVLIFERIKDELR---RGNTLIRSIDTGFSEAFSSIVDG 424

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS   +   G  ++  FA  +  G++++  +++     +L F+  +    +
Sbjct: 425 HLTTLISCAALFFLGTGLVKGFAATLGIGVLLSLFTALTCTRTLLRFLMGYSGLRS 480


>gi|301345754|ref|ZP_07226495.1| multidrug efflux protein [Acinetobacter baumannii AB056]
          Length = 1032

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 65/629 (10%), Positives = 165/629 (26%), Gaps = 48/629 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP+      +                 
Sbjct: 9   KYPVFTIMMMLSLMVLGLAS-----WKRMTVEEFPNIDFPFVV---------VTTQYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +  + +   F         A  V   +  
Sbjct: 55  SPEAVESDITKKLEDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   +    ++         I+      +       + S  + ++ + Q+       
Sbjct: 115 VIAQFRDEIDTPIVQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  +  P +L+       ++       N          +        Q 
Sbjct: 173 NVNLLGDAKRQIRIKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                           D+          F      +    A +    
Sbjct: 233 KV--------------------IHPLGFGDLVIANKNGSPIFLKQVATVEDTQAELQSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    +         L+A         V   +      S   
Sbjct: 273 FYNGRTAVSVDILKSSDANVIQVVVKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VVRTIIEGAVLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+  ++LISMF + ++   +        K K   +     +       
Sbjct: 453 GLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKKESRLQRFFNYISNLLDG 512

Query: 539 AIQFM--------RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                        R RF  V I  +   +                 KG I++        
Sbjct: 513 LTHIYEKLLKLALRFRFITVIIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDS 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            L   ++ L  +      F +       +
Sbjct: 573 SLEYTQAKLHQVDQIIRQFPDVVSTYGVV 601



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 8/162 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + +A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG 
Sbjct: 338 IEGAVLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGL 397

Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+  +T               E     + T++      LP+A  GG
Sbjct: 398 LIDDAIVV----RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGG 453

Query: 792 SVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +      F + ++  ++++   S  +   +     D   K 
Sbjct: 454 LIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKK 495



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 861  ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 920

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 921  MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 977

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 978  LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 1020


>gi|156933330|ref|YP_001437246.1| multidrug efflux system subunit MdtB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166233223|sp|A7MHJ1|MDTB_ENTS8 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|156531584|gb|ABU76410.1| hypothetical protein ESA_01143 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1040

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/673 (10%), Positives = 183/673 (27%), Gaps = 45/673 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMASQSAGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPDDLPNPPVYSKVNPADPPIMT-LAVTSSALPMTQVEDMVETRVAQRISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L   +  +       N +     F              
Sbjct: 184 VTLSGGQRPAVRVKLNAQALASLGIDSETVRTAITSANVNSAKGSFDGP----------- 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+     ++                 + +       G  
Sbjct: 233 ---------ERAVTLSANDQMKSADEYRNLIIAYKNGAPVRLGDVATVEQGAENAWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ET   L   L           V          S +  
Sbjct: 284 ANKQPAIVMNVQRQPGANIITTAETIQKLLPQLTESLPKSVQVKVLTDRTTNISASVNDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ ++ ++  +    +   +I   IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERVINRVIA 523

Query: 540 IQFM-------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                                   ++  +  +F     + +   G IQ  + A + V  +
Sbjct: 524 RYGQLLKRVLNHPWLTLGVALGTLALTVLLWIFIPKGFFPVQDNGIIQGTLQAPQSVSFA 583

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +     ++    +     +   +F+      P  + A+ ++         + V     +
Sbjct: 584 SMAERQRAVADVILKDPAVESLTSFVGVDGTNPSLNSARLQINLKPLDDRDDRVQTVIAR 643

Query: 653 NTEIVGPKISREL 665
             E         L
Sbjct: 644 LQEAASRVPGATL 656



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|167033336|ref|YP_001668567.1| acriflavin resistance protein [Pseudomonas putida GB-1]
 gi|166859824|gb|ABY98231.1| acriflavin resistance protein [Pseudomonas putida GB-1]
          Length = 1032

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 61/583 (10%), Positives = 156/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YKLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + +TL F      +    +V   +   
Sbjct: 56  PQVMTSAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + VL+   I        + +  +  +   ++        
Sbjct: 116 SNLLPSDLPAPPVYNKVNPADTPVLT-LAISSKTMPLPKLNDLVDTRVAQKLAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   L         +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   ++ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLRSPEEYANLILAYNNGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +           V          +    
Sbjct: 275 ANENHAVLLNIQRQPGANVIEVVDRIKDLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      L+   ++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVMVTFVFLRRFSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +  A  W +    L  + ++  L      Y +  KG   + 
Sbjct: 515 KHYGSALQWVLKHQPLTLLVAVASLALTVFLYMVVPKGFFPVQ 557



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 62/160 (38%), Gaps = 7/160 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I  + M+ ++++R ++   L     + L +  T G   L G   N   + A+    G+
Sbjct: 340 IAIVLVVMVTFVFLR-RFSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +      +      K   +     +  + +    ++P+      
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G +   FAI +A  I+++   S+ +   +   +     K
Sbjct: 456 VGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +        +S RD I ++        + T++AA    +P+ +    G  + 
Sbjct: 928  IMMIDFALE--AERHQGMSPRDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELR 985

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                + M  G++V+   ++F    I L+      +
Sbjct: 986  QPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRLARR 1020


>gi|183599414|ref|ZP_02960907.1| hypothetical protein PROSTU_02889 [Providencia stuartii ATCC 25827]
 gi|188021658|gb|EDU59698.1| hypothetical protein PROSTU_02889 [Providencia stuartii ATCC 25827]
          Length = 1040

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 74/652 (11%), Positives = 168/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 18  RPVATTLFMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F  +   E    +V   +   
Sbjct: 64  PEVMTSAVTAPLETQFGQMSGLKQMSSQSSGGASVITLMFQLTLPLEVAEQEVQAAINSA 123

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S L  D     +          VL+   +        +    I  +   +I        
Sbjct: 124 SSLLPSDLPYPPIYNKVNPADPPVLT-LAVTSDAMPLTQVQDMIENRIAQKISQVNGVGL 182

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +P  +      +  +       N +     F              
Sbjct: 183 VTLAGGQRPAVRVNLNPQAMAAKGLDSETIRAAINNANVNSAKGSFDGP----------- 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +    +                 I +       G  
Sbjct: 232 ---------TRAVTLSANDQMKSLEDYRRLIVAFQNGAPVRLGDIATIEQGAENAYLGAW 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A          +   +   T +T   L   L           +          S S  
Sbjct: 283 ANAQQAIVINVQRQPGANVIETTDTIRNLLPELIETLPKSVDVKILTDRTSTIRASVSDV 342

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +  G   L+   ++ L+++ T A++   G ++   ++  + +
Sbjct: 343 QFELMLAIALVVMVIYLFLRNGIATLIPGIAVPLSLVGTFAVMYFCGFSVNNLTLMALTI 402

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +      +   G      TI     + +   + L F G 
Sbjct: 403 ATGFVVDDAIVVIENISRYLEQGDKPVVAALKGAGEIGFTIISLTFSLVAVLIPLLFMGD 462

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLI 534
             G   R FAIT+ ++ILIS   ++++   M   +             I         + 
Sbjct: 463 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARLLKPESEHKHNRFEIACERFFDRMIA 522

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              I ++ +    W      + ++    LL+          +    +         +S V
Sbjct: 523 GYAIWLKRILNHRWLTLSVAIGTLVLTVLLYMWIPKGFFPLQDNGIIQGTIESRQSISFV 582

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + +  ++ +    +   E             ++   R+   +K       
Sbjct: 583 AMSQKQQEVAEKLLSDPAVENITTYVGIDGTNPTLNNGRIQITLKPLDERPD 634



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 346 LMLAIALVVMVIYLFLRNGI-ATLIPGIAVPLSLVGTFAVMYFCGFSVNNLTLMALTIAT 404

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 405 GFVVDDAIVVIENI---SRYLEQGDKPVVAALKGAGEIGFTIISLTFSLVAVLIPLLFMG 461

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 462 DIVGRLFREFAITLAVAILISAVVSLTLTP 491



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S +D I ++        + T+MAA +  LP+ +    G  +     I M  G+
Sbjct: 944  AEREQGMSPKDAIYQACLLRFRPILMTTMAALLGALPLMLSSGVGAELRQPLGICMVGGL 1003

Query: 806  VVAASSSIFIAAPILLFIY 824
            +++   ++F    I L   
Sbjct: 1004 IMSQILTLFTTPVIYLLFD 1022


>gi|320102177|ref|YP_004177768.1| acriflavin resistance protein [Isosphaera pallida ATCC 43644]
 gi|319749459|gb|ADV61219.1| acriflavin resistance protein [Isosphaera pallida ATCC 43644]
          Length = 1126

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/606 (10%), Positives = 161/606 (26%), Gaps = 52/606 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + ++L   +   G    L   + +      P+                        
Sbjct: 10  KRPIFALMLMMTLVVSGSAAYLELGVDRFPKLDLPTIAVVTN--------------YPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +              + + ++F         +  V   +  
Sbjct: 56  TPEEVETEVSRIIEDAVARVSGIDELRSISWDGSSFVLITFNLDVDINVGSQDVRDAVNS 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L       ++  +  +   I+    +         E  +   R     +  +    
Sbjct: 116 VLNRLPPTIDPPIIRKSDTESSPIITLAVS---GQRDPQELYVLADRAVKQILESARGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +      +  E + SRL     +  ++       N    G                
Sbjct: 173 EARIAGASERAVRVEIEASRLAAHGLSITQVRDAIARQNLELPGGRVETGVKELGLRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   E                      D+                 +      V    
Sbjct: 233 RLEAAREFD--------------------DLVVSSGRGAPVRIRDLGRVIDGTKQVRTLC 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            ++  +    I          R          + +        S   
Sbjct: 273 RLDGVPAVVVEIQRQSGANTMEVIHAVKERLERCRELLPRDVTLNIIQDQSRYIEASLHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I + +  +V+ + +   +  ++A  +I  ++I T A +  LG TL   ++  +V
Sbjct: 333 VSNHLIIGSIMASLVVLVFMKSWRSTIIAAVAIPTSIIATFAAMKALGFTLNNVTMLALV 392

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
           L +G+ +D  I+V E I      K    F +   G       +  + ++ ++  + + F 
Sbjct: 393 LMVGVVIDDAIVVLENIFHCIEEKGMDPFTAAIEGTREIGLAVLATTLSLVVVFLPVSFL 452

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----------MKSIDIN 526
               G  +  F +T  ++IL+SM  + S+   M   +++  +                  
Sbjct: 453 NSVTGRMMYEFGVTATVAILVSMLVSFSLTPMMCSRMLKPTRQAIAGAPGALEQPHSRRG 512

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +  +      MR R   + +     +  + L      +Y        +  V   
Sbjct: 513 FYHVIEVGYERCLAWSMRWRGLVLLLCAATLVSILPLYNMVKQDYVPTNVDEGEFEVGFR 572

Query: 587 RPVDLS 592
            P  +S
Sbjct: 573 TPEGIS 578



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 70/204 (34%), Gaps = 5/204 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             ++ Q           V E +++    +    T+   +     I   L       +I S
Sbjct: 282 VEIQRQSGANTMEVIHAVKERLERCRELLPRDVTLNIIQDQSRYIEASLHEVSNHLIIGS 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A L+ +     W   + A   +   I  T       G   N   + A++ ++G  ++D
Sbjct: 342 IMASLVVLVFMKSWRSTIIAAVAIPTSIIATFAAMKALGFTLNNVTMLALVLMVGVVIDD 401

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +     +    +       +   E     + T+++  +  LP++      G +
Sbjct: 402 AIVVLENIF--HCIEEKGMDPFTAAIEGTREIGLAVLATTLSLVVVFLPVSFLNSVTGRM 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
           +  F +     I+V+   S  +  
Sbjct: 460 MYEFGVTATVAILVSMLVSFSLTP 483


>gi|258515178|ref|YP_003191400.1| acriflavin resistance protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778883|gb|ACV62777.1| acriflavin resistance protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 1044

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 57/515 (11%), Positives = 144/515 (27%), Gaps = 39/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +L   +  +GL       LP+  +D +P       +              E   
Sbjct: 10  RPVAISMLIIALIVLGLFS-----LPRLAVDLYPDMELPYAV---------ISTSYEGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +  +       + +   + + + F      +N  + +   +  V
Sbjct: 56  PAEVEQLITKPLESAVATTEGIKEVRSNSQNGFSLVIVIFNWGTNMDNATNDLREKIDYV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D     ++     +  I+    +I       ++           ++        
Sbjct: 116 RGMLPDDAGSPRVMKLDPNQAPII--SFSITGAQGDVVKLKKIAEDDIQPKLERIGGVAS 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S     ++    DP+++     +  ++                              
Sbjct: 174 VYISGGKTREIKVILDPAKIEAYGLSVNQVMQAISSD--------------------NVN 213

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V   G          + K+   +  I                 +            
Sbjct: 214 GTAGVVDKGSTETSIRVVGEYKSIDQLKKIQVSLANGNYIALENLSTVEDSFKKESQFTF 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +     +        L                      S +  
Sbjct: 274 VDGKTSLGLNVMKATGGNTVQVAKQVMAEVEKLNKTLPDGVKITTIMDTSKFIKDSINNV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +     + VL++ +   +  LV   +I +++I T +L+   G T+ + S+ G++L
Sbjct: 334 VDHGLMGGIFAVFVLYLFLRNVRSTLVVVLAIPISIIATFSLMYFGGQTINMLSLGGLIL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
           G+G  VD +++V E I    +    +  +   G S   + +  S +  ++  + + F   
Sbjct: 394 GMGSLVDFSVVVLESIYRYRQSGFGIIEAAKQGTSEVVNAVTASALAQVVVFMPIVFVQG 453

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   +  A+T+  S + ++F AI++V  +   +
Sbjct: 454 IAGILFKPMALTVSFSHIAALFAAITLVPMLSARL 488



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 91/251 (36%), Gaps = 8/251 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +    P    V  S + S++   +  +    ++   VR+          +   ++     
Sbjct: 780  LTIVSPTGARVPVSAVASVESHRVPTEITRTDQTREVRITADVTGRDVGSVNKDIQTAIS 839

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
               +P     N       ++      G + +I+S + + + +  +F+  F     + +L 
Sbjct: 840  KLALPDGYTVNYGGQAEDMAESFASLG-MALILSVLLVFMVMSAQFESLFQPFIIMFSLP 898

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  +    + G   ++TA+   + LIG  +N+ +V+ D +     L        + I
Sbjct: 899  PTFIGAIFGLGITGNPISVTAMIGAIMLIGVVLNNAIVLVDYIN---VLRKKGHQRDEAI 955

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +    L   + T++   +++LPMA     G       AI +AFG+  +   ++ +   
Sbjct: 956  LMAGPIRLRPILMTALTTVLALLPMAFGTGEGAEAQAPMAIVIAFGLTFSTVITLVLVPV 1015

Query: 819  ILLFIYDWRAK 829
            +     D   K
Sbjct: 1016 VYTIFDDLGKK 1026



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 75/203 (36%), Gaps = 9/203 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 +E + K + + V ++TI +T          ++  G   ++    A+ +      
Sbjct: 297 KQVMAEVEKLNKTLPDGVKITTIMDTSKFIKDSINNVVDHG---LMGGIFAVFVLYLFLR 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  +  + + I  T       G   N+ ++  ++  +G  V+  VVV + +    
Sbjct: 354 NVRSTLVVVLAIPISIIATFSLMYFGGQTINMLSLGGLILGMGSLVDFSVVVLESI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI-PMAFGIVV 807
           +   +     +   +  +E +     +++A  +  +P+    G  I      PMA  +  
Sbjct: 411 RYRQSGFGIIEAAKQGTSEVVNAVTASALAQVVVFMPIVFVQG--IAGILFKPMALTVSF 468

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  +++F A  ++  +     KN
Sbjct: 469 SHIAALFAAITLVPMLSARLLKN 491


>gi|297626357|ref|YP_003688120.1| Protein-export membrane protein secD [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922122|emb|CBL56690.1| Protein-export membrane protein secD [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 572

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 124/517 (23%), Positives = 211/517 (40%), Gaps = 39/517 (7%)

Query: 19  LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV----DEDDFVNGFLQMYS 74
           ++ AL       ++    +  P     LGLDLRGG+ + L      D        L+   
Sbjct: 17  IVFALVIVFLYGLMGLTKTWTP----RLGLDLRGGTTITLTARNNSDGSAPSKDNLETAR 72

Query: 75  DELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             ++  +   G+G  S+    ++ I ++  +    + +   V    Q     +    + +
Sbjct: 73  SIIQKRVDALGVGESSVTVQGDRQIEVAVPNVS-SDELVSLVGTTAQLGFRDVYSVTQSS 131

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
              + +        S          +        R   D  G ++           L   
Sbjct: 132 GPASGSSSSSPAATSNPTDVSTALPSSPAPKATPRASGDSTGAAD-------FDSALKWT 184

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           P  QD +             F        +        F  D  G    +     I+G  
Sbjct: 185 PSAQDST------------DFAAWNCGEPENVAPDQPLFACDEQGQLKYLLGPELINGQR 232

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD-----NIGKPLAVVLDGRVLTAPVI 308
           +  ++A         VV + FD  GA +F + T       +     A+VLDG+V++AP +
Sbjct: 233 ITDSSAAIPQGEVAWVVTMKFDGTGADQFQKATTQLATQSSPKNQFAIVLDGKVVSAPSV 292

Query: 309 NQAIPSGKAQISGNFTIE-TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           + AI  G A+I+G    E +A  LA  L+ G+LP+  ++     V A LG + +  G  A
Sbjct: 293 STAISGGNAEINGANINETSAKELANQLKFGALPVSFDVSSVDAVSASLGDEQLQAGLIA 352

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT----LTLPSIAGIVLG 423
            + GL+L++ +    Y   G+V   S+   VI+T   + LLG T    + LP IAG ++ 
Sbjct: 353 GLIGLILVLAYSFFYYRGLGIVVVGSLLAAVIITWGTIVLLGQTVGFAMNLPGIAGAIVA 412

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           IG+  DS I+  ERIR+E R   S+  S+  G+++A  TI  ++   L++ VVLF    G
Sbjct: 413 IGVTADSFIVYFERIRDEIRDGHSLRHSIQSGWNKARGTIVMADSVQLLSAVVLFILAIG 472

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           AV+GFA T+G++  I +F        ++  + R K  
Sbjct: 473 AVKGFAFTLGVTTAIDLFIVFFFTHPLVTLLGRTKFF 509



 Score =  119 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 88/265 (33%), Gaps = 8/265 (3%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +    D  G  Q      +    S  ++    +  G +               +    
Sbjct: 247 WVVTMKFDGTGADQFQKATTQLATQSSPKNQFAIVLDGKVVSAPSVSTAISGGNAEINGA 306

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
           +    +      + K   +     + + + V   +  E ++ G++  +I  I +L Y + 
Sbjct: 307 NINETSAKELANQLKFGALPVSFDVSSVDAVSASLGDEQLQAGLIAGLIGLILVLAYSFF 366

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEF----NLTAVAAVLTLIGYSVNDKVVVYD 742
            ++    +  + +L+  +  T G   L G       NL  +A  +  IG + +  +V ++
Sbjct: 367 YYR-GLGIVVVGSLLAAVIITWGTIVLLGQTVGFAMNLPGIAGAIVAIGVTADSFIVYFE 425

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R  ++      S R  I    N+  G  V       +S + + +     +  FA  + 
Sbjct: 426 RIRDEIRD---GHSLRHSIQSGWNKARGTIVMADSVQLLSAVVLFILAIGAVKGFAFTLG 482

Query: 803 FGIVVAASSSIFIAAPILLFIYDWR 827
               +      F   P++  +   +
Sbjct: 483 VTTAIDLFIVFFFTHPLVTLLGRTK 507


>gi|296534613|ref|ZP_06897023.1| hydrophobe/amphiphile efflux-1 family protein [Roseomonas
           cervicalis ATCC 49957]
 gi|296265062|gb|EFH11277.1| hydrophobe/amphiphile efflux-1 family protein [Roseomonas
           cervicalis ATCC 49957]
          Length = 502

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 59/497 (11%), Positives = 128/497 (25%), Gaps = 33/497 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R       L  +I   G +  L        + ++P+  P                     
Sbjct: 8   RRPRLAAALCLVIVLAGGIAGLV-----LPVTQYPNLTPPTV---------NVSASYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
             + +   +    +   + ++       +        ++++F      +     V   +Q
Sbjct: 54  SSEVIADTVGAPIESAVNGVEGMLYMSSTSSNAGQYSLSVTFEVGTDPDIAQVNVQNRVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L     +  +         ++      ++     +  S        D +      
Sbjct: 114 LATAQLPAAVAQQGVTVRARSPDFLLAIGFYAEEGGPDPLAVSAFTATTVADALSRVNGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP R+  L  T   +       N        G          Q
Sbjct: 174 GEARVVGNAEYGMRLWLDPRRMAALGITAEDVMAAVQSQNVQASLGQVGAAPAPQGQQEQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           + +  +  +                      +                 +          
Sbjct: 234 FSIVARGML-------------DTPEDFAGIVLRTAEDGAVLRIRDIGRVELGAQSYQAE 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L          S     +    ++        L A         +   +      +  
Sbjct: 281 AYLGGRPTTLLQISQSPGANALEAVDAVTEALRGLEADFPEGLAYSIVYDSTRFVRATVR 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T A    +V+ V F+ +   +  L+   +I +++I TLA+L   G +    S+  +
Sbjct: 341 EIIVTLAATFAIVVAVTFVFLQSWRATLIPALTIPVSLIGTLAVLYAAGLSANTVSLLAL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIATVV-- 476
           +L IGL VD  ILV E ++    +        +      +    I  + +  L   V   
Sbjct: 401 ILAIGLVVDDAILVVENVQRLLEEEPDLAPAEAARRAMGQVTGPIIATTLVLLAVFVPTA 460

Query: 477 -LFFFGGGAVRGFAITM 492
            L    G   R FAIT+
Sbjct: 461 LLPGINGQLYRQFAITI 477



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 76/202 (37%), Gaps = 6/202 (2%)

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
             +     G    L+++   PG +  +         +  E      +  + +        
Sbjct: 277 YQAEAYLGGRPTTLLQISQSPGANALEAVDAVTEALRGLEADFPEGLAYSIVYDSTRFVR 336

Query: 665 LIRKGIVGVIISAIAMLIYIWIRF--KWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
              + I+  + +  A+++ +   F   W   L    T+ + +  TL      G+  N  +
Sbjct: 337 ATVREIIVTLAATFAIVVAVTFVFLQSWRATLIPALTIPVSLIGTLAVLYAAGLSANTVS 396

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A++  IG  V+D ++V + + + +      ++  +   +++ +  G  + T++     
Sbjct: 397 LLALILAIGLVVDDAILVVENV-QRLLEEEPDLAPAEAARRAMGQVTGPIIATTLVLLAV 455

Query: 783 VLPMAVWG---GSVIGSFAIPM 801
            +P A+     G +   FAI +
Sbjct: 456 FVPTALLPGINGQLYRQFAITI 477


>gi|121605487|ref|YP_982816.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
 gi|120594456|gb|ABM37895.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
          Length = 1108

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 68/526 (12%), Positives = 151/526 (28%), Gaps = 22/526 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 38  RPVATALLMLAIVLAGLVGFRLLPLSALPQVDYPTIQ--------------VQTLYPGAS 83

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +     + +TL F      +    +V   +   
Sbjct: 84  PEVMAQTVTAPLERQFGQMAGLSRMSSTSTAGVSIVTLQFGLGLALDVAEQQVQAAINAG 143

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     +        + VL+   I        E    +  +   +I        
Sbjct: 144 GSLLPADLPAPPVYAKVNPADAPVLT-LAITSSTLALTEVQNIVNTRLALKISQVNGVGL 202

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + D   L         +       N +             S  +   
Sbjct: 203 VALSGGQRPAVRIQADTRALASYGLGLDALRTAISAANANGAKGSIDGPTRSYSINSNDQ 262

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +   + +          ++   V    +      +  +                +
Sbjct: 263 LLAASDYQNLIIAWRNGAAVRVSNVARVVEGAENTQLGAWASIACAPGASASPDEPGDCL 322

Query: 303 LTAP----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            T               +   +   T++        L+AG        V          S
Sbjct: 323 GTPGRRLVPAIILNVQRQPGANVIATVDAIKARLPELQAGLPTSMRVDVLSDRTTGIRAS 382

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               +    +   +V++V+F  +   +  ++A  S+ +++I T   + LLG +L   S+ 
Sbjct: 383 VLHVEIELLLAVLMVVLVIFAFLHNLRATVIASLSVPISLIGTCGAMYLLGYSLNNLSLM 442

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + +  G  VD  I++ E I     + +S   +   G  +   TI    ++ +   + L 
Sbjct: 443 ALTIATGFVVDDAIVMIENISRYIEEGESPMFAALKGAKQIGFTIISLTVSLIAVLIPLL 502

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           F G   G   R FAIT+ ++ILIS   ++++V  M   +++ +  +
Sbjct: 503 FMGDVVGRLFREFAITLAITILISAVVSLTLVPMMSAKLLKARPQR 548



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 6/150 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    + A  ++ + +  T G   L G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 403 AFLHNLRATVIASLSVPISLIGTCGAMYLLGYSLNNLSLMALTIATGFVVDDAIVMIENI 462

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S      K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 463 ---SRYIEEGESPMFAALKGAKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFREFAITL 519

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           A  I+++A  S+ +   +   +   R +  
Sbjct: 520 AITILISAVVSLTLVPMMSAKLLKARPQRG 549



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                   S ++ I ++        + T++AA  + +P+ +    G  +     + +  G+
Sbjct: 1013 AERHQGKSPQEAIHQAALLRFRPILMTTLAALFAAVPLMLGFGEGAELRRPLGLAIFGGL 1072

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L       +  R
Sbjct: 1073 IVSQVLTLFTTPVIYLAFDRLGRRVGR 1099


>gi|224537860|ref|ZP_03678399.1| hypothetical protein BACCELL_02747 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520546|gb|EEF89651.1| hypothetical protein BACCELL_02747 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1056

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 72/678 (10%), Positives = 194/678 (28%), Gaps = 48/678 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVAIFGLFS-----LSKLPVDLYPDIETNTIM---------VMTSYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNSVSNLKHITSRSSENISVITLEFEYGYDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  + +  ++   +   I I+L     ++      +         ++ +       
Sbjct: 115 VSSQLPDEVETPIIFKFSTDMIPILLLSVQAEESQPALYKILD---DNIVNPLARVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP++L     +   +S      N +  G  F V     S   + 
Sbjct: 172 TVSISGAPKREVNVYCDPNKLDAYNLSVETISSIISAENRNTPGGTFDVGSNTYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E+  I +                            +      +   +       
Sbjct: 232 EFKDPKEMENIVVGTH--------------------NGASVYLRDVATVVDSVEERAQKT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +    +   L+          +        L +   
Sbjct: 272 YSNGVQGAMIVVQKQSGANSVAISQKVIDMLPQLQKSLPSDVKLGIIVNTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420
            + T       V++V+F+ +   +  ++   +I ++++ +   L ++   +L + S++ +
Sbjct: 332 LEETIMYAMLFVILVVFVFLGRWRATVIICITIPMSLVASFIYLGIIDGGSLNIISLSCL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD  I+V E +     +      +     +    ++  S +T +     L   
Sbjct: 392 SIAIGNVVDDAIVVLENVTTHIERGSEPKQAAVHATNEVAISVIASTLTMIAVFFPLTMV 451

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFL--- 533
            G +    R     M + + +S  +A+S    M    +   KK   + I   +       
Sbjct: 452 SGMSGVLFRQLGWMMCVIMTVSTISALSFTPMMCAQLLRLQKKQSKMFIALYTPIQRGLD 511

Query: 534 ---IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              +     + +       V I       +      +            ++GV    P+ 
Sbjct: 512 ALDVWYQNRLDWAVRHRITVMIGCAAFFVASLFCAKYIGTEFFPAADNSRIGVNLQLPIG 571

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R+   + ++ +   + ++G          Q         + +     I+  + L +
Sbjct: 572 ARVERAQALASELTEKWMKRYEGVMKVCNYTVGQADSDNTFASMQDNGSHIISFNISLVS 631

Query: 651 IQNTEIVGPKISRELIRK 668
             + ++    +  E+   
Sbjct: 632 PGDRDVKLETVCDEMRED 649



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 76/242 (31%), Gaps = 8/242 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              +L  +            ++  +V +            V +         +P       
Sbjct: 793  IKDLGKVVERSAPPTIERKDRERVVTVSAVISGVPLGDVVADGNAIIDKMDLPSGISIQI 852

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                          G + V+I  I + I +  +F+   +    + ++    +  L     
Sbjct: 853  SGSYEDQQDSFSDLGTLAVLI-IILVFIVMAAQFESLSYPFIIMFSIPFAFSGVLMALFF 911

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   N+ ++   + LIG  V + +V+ D +          ++    +  +    L   +
Sbjct: 912  TGTNLNVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGMAVLHSVVTAGRSRLRPVL 968

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T++   + ++PMAV    G  +     + +  G+ V+   ++ +   +         + 
Sbjct: 969  MTTLTTILGMVPMAVGQGEGAEMWRPLGVAVIGGLTVSTILTLILVPVLYCSFAGIGIRR 1028

Query: 831  AR 832
             R
Sbjct: 1029 NR 1030



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 92/250 (36%), Gaps = 8/250 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V + ++S++       +   +   +V  +    +SVA ++ +  +  ++ + +P 
Sbjct: 252 VYLRDVATVVDSVEERAQKTYSNGVQGAMIVVQKQSGANSVAISQKVIDMLPQLQKSLPS 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                  +         I      ++ + + +++ +     +W   +    T+ + +  +
Sbjct: 312 DVKLGIIVNTSDNILNTIDSLEETIMYAMLFVILVVFVFLGRWRATVIICITIPMSLVAS 371

Query: 708 LGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +  +  G   N+ +++ +   IG  V+D +VV + +             +     + N
Sbjct: 372 FIYLGIIDGGSLNIISLSCLSIAIGNVVDDAIVVLENV---TTHIERGSEPKQAAVHATN 428

Query: 767 ETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++       P+  V G  G +       M   + V+  S++     +   +
Sbjct: 429 EVAISVIASTLTMIAVFFPLTMVSGMSGVLFRQLGWMMCVIMTVSTISALSFTPMMCAQL 488

Query: 824 YDWRAKNARI 833
              + K +++
Sbjct: 489 LRLQKKQSKM 498


>gi|124023324|ref|YP_001017631.1| preprotein translocase subunit SecD [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963610|gb|ABM78366.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9303]
          Length = 495

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 123/498 (24%), Positives = 217/498 (43%), Gaps = 49/498 (9%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFV----NGFLQMYSDELRSFLKKEGIGVFSMR 92
           S      + LGLDLRGGS L LEV     +       L+     L   +   G+   +++
Sbjct: 20  SVTASFPLELGLDLRGGSQLTLEVQPAGEITRVKAEQLEAVKAVLDRRVNGLGVAESTLQ 79

Query: 93  Q-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
               N++ L     +     A  +               ++ +          +   +  
Sbjct: 80  TIGDNQLVLQLPGEQDPTRAAKVLGETALLEFRAQKPGTEEEVR--------GLQRLKRQ 131

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           ++ ++    E+++       D++   +    +             +   +L +       
Sbjct: 132 VESILKSKQERAISGESPSDDELDKQQLVEAQQAFGLQGSVGSEIEQLEQLNE------- 184

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                                 + S     L E         +               V 
Sbjct: 185 ----------------------KVSIKIAELFEPTSLTGKDLVTAGRQQQQNVPDSWEVT 222

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN-------QAIPSGKAQISGNFT 324
           +SF+  G  +F E+T+   G    + +     +    +         I  G A ISGNF 
Sbjct: 223 LSFNREGGDQFAELTQSIAGTGRLLGIVLDGRSISEASVGEQFRAAGITGGAATISGNFN 282

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  L   LR GSLP+ + I+E R +G  LG+++I +   A ++GL L+ +FM+V Y 
Sbjct: 283 AEDARDLEVQLRGGSLPLPVEILEVRTIGPTLGAENIRRSLIAALSGLALVAVFMVVAYR 342

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             GLVA  ++ L  +  LA+ +L+   LTLP IAG +L IG+AVD+N+L+ ER+++E R+
Sbjct: 343 LAGLVAVLALSLYALFNLAMYALIPVILTLPGIAGFILSIGMAVDANVLIFERVKDELRR 402

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
             ++  S++ GFS+A S+I D ++T LI+   LFF G G V+GFA T+G+ +++S+FTA+
Sbjct: 403 GNTLIRSIETGFSQALSSIVDGHLTTLISCAALFFLGTGLVKGFAATLGIGVVLSLFTAL 462

Query: 505 SIVRAMMIFIIRYKKMKS 522
           S  R ++ F++ Y+ ++ 
Sbjct: 463 SCTRTLLRFLMGYQALRR 480



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E IR+ ++  +     + +++ + ++    L A+  L L     L  +AL  
Sbjct: 309 TIGPTLGAENIRRSLIAALSGLALVAVFMVVAYRL-AGLVAVLALSLYALFNLAMYALIP 367

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++      +    I+   ++ L   V  
Sbjct: 368 VILTLPGIAGFILSIGMAVDANVLIFERVKDELR---RGNTLIRSIETGFSQALSSIVDG 424

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS   +   G  ++  FA  +  G+V++  +++     +L F+  ++A   
Sbjct: 425 HLTTLISCAALFFLGTGLVKGFAATLGIGVVLSLFTALSCTRTLLRFLMGYQALRR 480


>gi|33862890|ref|NP_894450.1| preprotein translocase subunit SecD [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634806|emb|CAE20792.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9313]
          Length = 495

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 123/498 (24%), Positives = 218/498 (43%), Gaps = 49/498 (9%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDEDDFV----NGFLQMYSDELRSFLKKEGIGVFSMR 92
           S      + LGLDLRGGS L LEV     +    +  L+     L   +   G+   +++
Sbjct: 20  SVTASFPLELGLDLRGGSQLTLEVQPAGEITRVKSEQLEAVKAVLDRRVNGLGVAESTLQ 79

Query: 93  Q-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
               N++ L     +     A  +               ++ +          +   +  
Sbjct: 80  TIGDNQLVLQLPGEQDPTRAAKVLGETALLEFRAQKPGTEQEVR--------GLQRLKRQ 131

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
           ++ ++    E+++       D++   +    +             +   +L +       
Sbjct: 132 VESILKSKQERAISGESPSDDELDKQQLVEAQQAFGLQGSVGSEVEQLEQLNE------- 184

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                                 + S     L E         +               V 
Sbjct: 185 ----------------------KVSIKIAELFEPTSLTGKDLVTAGRQQQQNVPDSWEVT 222

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN-------QAIPSGKAQISGNFT 324
           +SF+  G  +F E+T+   G    + +     +    +         I  G A ISGNF 
Sbjct: 223 LSFNREGGDQFAELTQSIAGTGRLLGIVLDGRSISEASVGEQFRAAGITGGAATISGNFN 282

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E A  L   LR GSLP+ + I+E R +G  LG+++I +   A ++GL L+ +FM+V Y 
Sbjct: 283 AEDARDLEVQLRGGSLPLPVEILEVRTIGPTLGAENIRRSLIAALSGLALVAVFMVVAYR 342

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             GLVA  ++ L  +  LA+ +L+   LTLP IAG +L IG+AVD+N+L+ ER+++E R+
Sbjct: 343 LAGLVAVLALSLYALFNLAMYALIPVILTLPGIAGFILSIGMAVDANVLIFERVKDELRR 402

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
             ++  S++ GFS+A S+I D ++T LI+   LFF G G V+GFA T+G+ +++S+FTA+
Sbjct: 403 GNTLIRSIETGFSQALSSIVDGHLTTLISCAALFFLGTGLVKGFAATLGIGVVLSLFTAL 462

Query: 505 SIVRAMMIFIIRYKKMKS 522
           S  R ++ F++ Y+ ++ 
Sbjct: 463 SCTRTLLRFLMGYQALRR 480



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/176 (18%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E IR+ ++  +     + +++ + ++    L A+  L L     L  +AL  
Sbjct: 309 TIGPTLGAENIRRSLIAALSGLALVAVFMVVAYRL-AGLVAVLALSLYALFNLAMYALIP 367

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++      +    I+   ++ L   V  
Sbjct: 368 VILTLPGIAGFILSIGMAVDANVLIFERVKDELR---RGNTLIRSIETGFSQALSSIVDG 424

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS   +   G  ++  FA  +  G+V++  +++     +L F+  ++A   
Sbjct: 425 HLTTLISCAALFFLGTGLVKGFAATLGIGVVLSLFTALSCTRTLLRFLMGYQALRR 480


>gi|33863883|ref|NP_895443.1| RND family multidrug efflux transporter [Prochlorococcus marinus
           str. MIT 9313]
 gi|33635466|emb|CAE21791.1| putative RND family multidrug efflux transporter [Prochlorococcus
           marinus str. MIT 9313]
          Length = 1145

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 68/522 (13%), Positives = 151/522 (28%), Gaps = 33/522 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I   GL+       P   ++  P   P              + +    +
Sbjct: 10  RPVLATVCSLLIVIAGLISI-----PILPVEMLPDIAPPTVK---------VNSIYTGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    ++  + ++    +   S     + I ++F      +     V   +  
Sbjct: 56  AESVEQGVTSVLEQQINGVENMDYLTSSSSADGVSSIAVAFESGSNSDINQVNVQNRVAL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQIGISE 178
              +L    +K  +         ++L     +            S  +     D++   +
Sbjct: 116 AEPQLPEAVRKAGVSVNKASNSILLLYNFVSEDPSNIEYSVETISGLLDLGLTDEVKRVK 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +        +      D  +L     T+A +       N        G     +   
Sbjct: 176 GVGEVTYFGNRKVAFRLWLDNEKLEVFGLTSADVMGAIESQNRLVPAGNVGGEPSAEGQI 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             +     V+++G  ++                +   E G    F      +    +   
Sbjct: 236 FTF----PVQLNGRLVSIGDFENM--------VVRTTEDGGLVRFSDVGHVVLGGESYSN 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L             +  +          +     A             N      S
Sbjct: 284 SATDLQGVPSVSMAVYQLSGSNALEVSNGVKDVLEEFTAKMPVGMKIEKIYDNTDFINAS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +    +      LV+++LF+ +   K  LV   +I + ++ T +L+   G +L   ++ 
Sbjct: 344 INGVTNSLRDAIILVVLILFVFLQNWKATLVPGIAIPVALLGTFSLVLWFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IATVVL 477
           G+VL  GL VD  I V E    +     +   +        +S +  +++    +   VL
Sbjct: 404 GLVLATGLVVDDAITVIEDTSTKQSLGMTALEAAKSTMDELFSAVIATSLVLFSVFLPVL 463

Query: 478 FFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           FF G  G   + FA T+  +I IS F A++    +   ++  
Sbjct: 464 FFPGATGSIYKQFAATIIFAIAISTFNALTFSPMLSALLLGR 505



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 17/218 (7%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R     G   A     + +          +              E+    +  VI +
Sbjct: 909  NLYRSIKIEGSPAAGKSSGQAINGMKELFAAQNLKSLGFDWTGISREEVKAGALAVVIFA 968

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +++Y+ +      +   L  + T+   +   L F AL G   N+ A   ++ LIG +
Sbjct: 969  LGILVVYLVLAAQYESYTDPLIILMTVPTAMLGALFFLALRGEVLNIYAQVGLVMLIGLA 1028

Query: 734  VNDKVVVYD----RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
              + +++ D    RM +        +S  +   ++    L   + T++++    +P+ + 
Sbjct: 1029 AKNGILIVDLANQRMAE-------GVSALEAARQAAKSRLRPIIMTAISSLFGFMPLVLA 1081

Query: 790  GGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G+      S    +  G++VA   S+F+     + + 
Sbjct: 1082 SGAGARSQASLGTVVFGGLLVATFLSLFVVPVFYVAVK 1119



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 57/166 (34%), Gaps = 6/166 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S     VLE    K+   + +  I +           +       +I+  + + +++   
Sbjct: 310 SNGVKDVLEEFTAKMPVGMKIEKIYDNTDFINASINGVTNSLRDAIILVVLILFVFLQ-- 367

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + + +  T      FG   N   +  ++   G  V+D + V   +   
Sbjct: 368 -NWKATLVPGIAIPVALLGTFSLVLWFGFSLNQLTLFGLVLATGLVVDDAITV---IEDT 423

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
               +  ++  +    +++E     + TS+  F   LP+  + G+ 
Sbjct: 424 STKQSLGMTALEAAKSTMDELFSAVIATSLVLFSVFLPVLFFPGAT 469


>gi|116689218|ref|YP_834841.1| acriflavin resistance protein [Burkholderia cenocepacia HI2424]
 gi|116647307|gb|ABK07948.1| acriflavin resistance protein [Burkholderia cenocepacia HI2424]
          Length = 1102

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 70/583 (12%), Positives = 158/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   +   +       FP+                    L    
Sbjct: 10  RPVATTLLALGVALAGLFAFIKLPVSPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVSEMTSTSTVGNARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +   +            +   +   Q
Sbjct: 116 RADLPAALKSNPTYRKVNPADSPIMV-VSLTSETASPAKVYDAASTVLQQSLSQIDGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VTVSGSANPAVRVELEPQSLFHYGIGLEDVRAALASANANAP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEFGPQRFQLYTNDQASQASQYRDLVVAYRNGSAVRLSDLSDVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +   TI+        L A                    S    
Sbjct: 275 SNGKRAVLVILYRSPGANIIETIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLRDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVSLVVMVVFLFLRNWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGKPRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++  +     +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLAVSLTVTPMMCARLLPEQHDPQSEGRFGRFLERGFARMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  W +   +L  +     +  +   Y +  KG     
Sbjct: 515 RGYERSLSWALRRPLLILLTLFATIGLNVYLYIVVPKGFFPQQ 557



 Score = 84.7 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 66/192 (34%), Gaps = 6/192 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               RV   + +    +    T+         I   L       +I  ++ +++      
Sbjct: 295 ETIDRVRAALPQLTASLPADITVTPVLDRSTTIRASLRDTEHTLLIAVSLVVMVVFLFLR 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + I  T G   L G   +  ++ A++   G+ V+D +VV + +    
Sbjct: 355 NWRATLIPSVAVPISIVGTFGAMYLLGFSIDNLSLMALIVATGFVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +                 E     +  S++     LP+ + GG V      FA+ ++  I
Sbjct: 412 RHIENGKPRMQAAFDGAREVGFTVLSMSISLVAVFLPILLMGGIVGRLFREFALTLSLAI 471

Query: 806 VVAASSSIFIAA 817
            V+ + S+ +  
Sbjct: 472 AVSLAVSLTVTP 483



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/215 (17%), Positives = 94/215 (43%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                + +     V+ ++  +++ + + +I    TI  +     +  ++ +    + ++ +
Sbjct: 869  VATTISFNLPPGVSLSQATQIIYQTMAQIGVPPTIVGSFQGTAQAFQQSMNDQPILILAA 928

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+ I + I ++ +   +  ++TL       L    LF  EF++ A+  V+ LIG    
Sbjct: 929  LLAVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTEFSIIALIGVILLIGIVKK 988

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D      + +    S  D I ++        + T+MAA +  LP+A     G  
Sbjct: 989  NAIMMVDFAIDQTRNH--GKSSFDAIHEACLLRFRPIMMTTMAALLGALPLAFGNGDGAE 1046

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +     I +A G+V++   +++    + L++  +R
Sbjct: 1047 LRAPLGIAIAGGLVMSQVLTLYTTPVVYLYMDRFR 1081


>gi|254701097|ref|ZP_05162925.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella suis bv. 5 str.
           513]
 gi|261751630|ref|ZP_05995339.1| acriflavin resistance protein [Brucella suis bv. 5 str. 513]
 gi|261741383|gb|EEY29309.1| acriflavin resistance protein [Brucella suis bv. 5 str. 513]
          Length = 1043

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 65/547 (11%), Positives = 157/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T  F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSISSTSSFERSRVTAEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 74/220 (33%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++ + +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   ++     +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFREFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 70/165 (42%), Gaps = 8/165 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    +  G+ +A  +++++  P+   +     K  
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYV-TPVAYLLLGRFTKPK 1021


>gi|228471675|ref|ZP_04056448.1| multidrug resistance protein, AcrB/AcrD family [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228276828|gb|EEK15523.1| multidrug resistance protein, AcrB/AcrD family [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 1052

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 70/673 (10%), Positives = 172/673 (25%), Gaps = 53/673 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G+L  L        + ++P   P               + +    
Sbjct: 8   RPVLSTVISILIVILGVLGIL-----SLPVSQYPDIAP-------------VTVSVRASY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + +     L   +        I   +       IT+ F +    +N A  V  
Sbjct: 50  GGANAETVLKAVVIPLEEQINGVENMDYIVSSASNSGSANITVYFKNGMDPDNAAVLVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   N+ L  + K+  +     +  +++      D      +     +    I  +   
Sbjct: 110 RVSYANAILPAEVKQAGVTVEKREAGNLMFLTFFSDNPEIDEVFLENYLAINVIPGLKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L+       +++      +        G       +
Sbjct: 170 TGVGDAEEFGGKNYSMRIWLDPQKLQAYKLNPTEVTAAISSQSLEAAAGTLGQNSGSSYE 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                     K  +    +     G R         +       
Sbjct: 230 YTIKYKGK----------------YNKVSEYENIVLKAMEGGRILRLKDVAKVELDAMGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           S     + +  ++        +           +          
Sbjct: 274 TSFSESKGRPAIAMGISQTPGANAHAVVQNIETYLKSIEKTLPEGVTYSINFNVNTFLNA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S    T      LV +V+++ +   +  L+   ++ ++++ T   L++ G ++ + ++
Sbjct: 334 AISKVVSTLLEAFLLVFLVVYLFLQDFRSTLIPAIAVPVSIVGTFFFLNIFGYSINMLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +     +    +     +     I    +      V 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHSKMEHTGEKAKPATISAMNEITGAIISITLVMAAVFVP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      + F +T+ ++I IS   A+++   +    ++    K          F 
Sbjct: 454 VTFIEGTTGVFYKQFGVTLIVAIFISAVNALTLSPVLCSLFLKPHGDKEYQNKSWMGKFF 513

Query: 534 IPDCIAIQF----------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
               IA                R   V + +     +      + L  G          +
Sbjct: 514 HKFNIAFDAATLKYGQTFTFFLRHKWVTLVLFAVAGAGIYFANNNLQKGFVPNEDQGFVL 573

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +    +  + +      L+          G +NF                 +     K  
Sbjct: 574 MDASMIPGASMERVANQLREVSKDLNEIPGVENFTFVTGNGMLSGAGSNNGMGFFTLKPF 633

Query: 644 EIVPLSTIQNTEI 656
           E       Q+ + 
Sbjct: 634 EERAKHPDQSIDA 646



 Score = 62.4 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/400 (11%), Positives = 114/400 (28%), Gaps = 21/400 (5%)

Query: 447  SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
                S+D    +A++         ++        G G   G +  +       +      
Sbjct: 639  HPDQSIDAIIGKAFAAASKIKDARILFFQPPAVSGFGMGAGVSFALLNKSGADVTEINKT 698

Query: 507  VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
             +  M  +    +++    +  + F      I ++        V   +      I   + 
Sbjct: 699  TQEFMAALNARPEVQYAQTSFNTDFPQYQMDINVERAMQSGIAVSTILSTLQNYIGGYYA 758

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF-------QNFDGEKNFLV 619
                     +  + +  L     D++ + +       G+++            G +    
Sbjct: 759  TDFTLYGK-QFRVMVQALPEDRKDVNSLNNLFVKTGTGEMAPISEYVTLNRVFGPQAISR 817

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR----KGIVGVII 675
               Y   D  A T         +  I  ++  +     G   +              VI 
Sbjct: 818  YNLYTSVDISAATNEGYSTGDVVKAIEEVAAQKLNSNYGIDYTGLTREEQNAGSQTIVIF 877

Query: 676  SAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                +  Y  +      +   L  + +L   I        LFG+E N+    +++ L+G 
Sbjct: 878  LLSLIFTYFILSAQYESYILPLSVLMSLPFGIFGAYLGQWLFGLENNIYFQISLIMLMGL 937

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ +     ++      S       +    L   + TS A  + +LP+      
Sbjct: 938  LAKNAILIVEFA---VQRRRHGESLSKAAINAAMARLRPILMTSFAFIVGLLPLVFASGV 994

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G +   S A   A G ++     + +   + +     + +
Sbjct: 995  GAAGNRSVATGAAIGQLIGTFFGLIVIPVLFVIFQHLQER 1034



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 89/238 (37%), Gaps = 7/238 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              ++       +   Q    ++ A  + +E   K I + +P     
Sbjct: 262 DVAKVELDAMGYTSFSESKGRPAIAMGISQTPGANAHAVVQNIETYLKSIEKTLPEGVTY 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           +            I K +  ++ + + + + +++    +   L     + + I  T  F 
Sbjct: 322 SINFNVNTFLNAAISKVVSTLLEAFLLVFLVVYLFLQDFRSTLIPAIAVPVSIVGTFFFL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +FG   N+  + A++  IG  V+D +VV + +   M+          +   ++NE  G 
Sbjct: 382 NIFGYSINMLTLFALVLAIGIVVDDAIVVVEAVHSKMEHTGEKAKPATI--SAMNEITGA 439

Query: 772 SVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +  ++      +P+  + G + +    F + +   I ++A +++   +P+L  ++  
Sbjct: 440 IISITLVMAAVFVPVTFIEGTTGVFYKQFGVTLIVAIFISAVNAL-TLSPVLCSLFLK 496


>gi|327541511|gb|EGF28046.1| RND family multidrug efflux transporter [Rhodopirellula baltica
           WH47]
          Length = 1144

 Score =  157 bits (395), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 68/609 (11%), Positives = 156/609 (25%), Gaps = 41/609 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      +++  +I  +G L           + +FPS  P               + + V
Sbjct: 6   LHRPALAIVISLLILFMGGLAI-----NVLPISQFPSVAPP-------------SVRVSV 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKV 115
                     +      L   +     +           +  I + F      +     V
Sbjct: 48  SYPGASAKILIDSTMVILEQAINGVPNMRYMLSDATSAGEGTIQVIFEPGTDPDVAVMNV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +Q V + L    ++  ++        ++                        +++I 
Sbjct: 108 NNRVQMVKNNLPPIVEREGIIVMQNMSSMLMYVNVFSTDENVDQNYLYNYSTVNILNEIK 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  E D  R+R        +       +        G      
Sbjct: 168 RIPGVGFASILGNRSYAMRVELDLDRMRAYHIDAEDVMEALADQSMIGTPGRLGQATGTT 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S   +Y++                       +    I                 I    +
Sbjct: 228 SQTLEYVLT-------------WVGRYTTPEEYDQIILRATPEGEILRLADVATISLGSS 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA-GSLPIKLNIVEERNVGA 354
                  +        +       +    IE        ++     P     V       
Sbjct: 275 FYDLYSDIDGLPAAAIVLKQTPGSNAAEVIEKVKAKVEEIKENQFPPGMDYAVTYDVSNF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S      T      LV +V+++ +   +  L+   ++ +++I T   + + G ++ L
Sbjct: 335 LDASIEKVLHTLFEAFILVSLVVYLFLGDFRSTLIPTLAVPVSLIGTFFFMLMFGMSINL 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++  +VL IG+ VD  I+V E + E+   K+   + +           I    +     
Sbjct: 395 ITLFALVLAIGVVVDDAIVVVEAVHEKMHAKHFGPYQATREVVQEISGAIIAITLVMTAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + + F  G      R FA+TM +SI+IS   A+S+   +   I++     +        
Sbjct: 455 FIPVTFMTGPVGVFYRQFALTMAMSIVISGVVALSLTPVLCAMILKPLDDNTPRGIVGLL 514

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              +           R     +        +  L    L + +  +              
Sbjct: 515 NRGMQKIAGKYAFVLRALASLLLGFAVGYGVYSLLHIELVHEVISEQVELTDTRIQIIAG 574

Query: 591 LSVVRSNLE 599
           +  + +   
Sbjct: 575 VVALLATFS 583



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 79/227 (34%), Gaps = 6/227 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L S      S  +       +++       +    +V   V++      P         
Sbjct: 270 SLGSSFYDLYSDIDGLPAAAIVLKQTPGSNAAEVIEKVKAKVEEIKENQFPPGMDYAVTY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFG 715
                    I K +  +  + I + + +      +   L     + + +  T  F  +FG
Sbjct: 330 DVSNFLDASIEKVLHTLFEAFILVSLVVYLFLGDFRSTLIPTLAVPVSLIGTFFFMLMFG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +  NL  + A++  IG  V+D +VV + + + M  +           + + E  G  +  
Sbjct: 390 MSINLITLFALVLAIGVVVDDAIVVVEAVHEKM--HAKHFGPYQATREVVQEISGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++      +P+    G V      FA+ MA  IV++   ++ +   +
Sbjct: 448 TLVMTAVFIPVTFMTGPVGVFYRQFALTMAMSIVISGVVALSLTPVL 494



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 76/245 (31%), Gaps = 10/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +     Q  +    + +        + A           I ++  
Sbjct: 879  FVKNEGGEMVPYSAFMRIEKKQGLNEISRYNLYPTAPIQGAPAAGYSSGEAIAAIKQVAA 938

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIA-MLIYIWI---RFKWYFALGAITTLILD 703
             +     +I    +S +  + G   V I  I  + +Y+ +      +   L  +T+L + 
Sbjct: 939  ETLPNGFDIDWQGLSYDEAKSGNTAVYIFLIVVIFVYMVLVGQYESFIIPLAVLTSLPVG 998

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I  +  F    G+  ++     ++ L+G    + +++ +     ++     +S  +   +
Sbjct: 999  IFGSFAFLQSMGLANDVYCQIGLVMLVGLLGKNAILIIEFA---VQRRQEGLSIMEAGIE 1055

Query: 764  SINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    ++P+    G   I   +       G+++     + +   + 
Sbjct: 1056 GGKLRFRPILMTSFAFIAGLIPLVRATGPGAIGNRTIGTTAVGGMLLGTLVGVLVIPGLY 1115

Query: 821  LFIYD 825
                 
Sbjct: 1116 YLFAK 1120


>gi|330868005|gb|EGH02714.1| multidrug RND efflux transporter, permease MdtB [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 990

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCALLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGGLRWVLRHQTLTLLAALATLALTVLLYIVVPKGFFPVQ 557



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCALLLKREPK 495


>gi|314923581|gb|EFS87412.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL001PA1]
          Length = 553

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 120/540 (22%), Positives = 210/540 (38%), Gaps = 55/540 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +LVI+  M   +G++                +  P     LGLDLRGG+ + L    +D
Sbjct: 3   IFLVIIIVMYVLMGVM---------------RTWSP----KLGLDLRGGTSVTLTAKTED 43

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTL 117
                   L+     +   +   G+G  S++ + ++ I +S  +       E +     L
Sbjct: 44  GKAPSATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQL 103

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLS--QNNIDQVISHAIEQSMEIIRQRIDQIG 175
             + V ++  V  K            S + +   +        A   S         Q  
Sbjct: 104 GFRMVYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASATPDASASSKGGTTSSASQYN 163

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +               P  +D                       S            D
Sbjct: 164 EKDPQSAAKMVKAAEEWKPTPEDQKAFEDY------------KCAKSVDSPDDKSLVTCD 211

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +     +   V I+G  +  A +         VV++ F+ +G   F + T     K   
Sbjct: 212 RERTMKYLLSPVAITGTQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSP 271

Query: 296 VVLDGRVLTAPVINQAIP-----------SGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
                 VL   VI+                G+AQISG+FT ++A  LA +L+ G+LP+  
Sbjct: 272 QNQFAVVLDGKVISSPQLNGDTGASCPINGGEAQISGHFTQDSAADLANVLKYGALPLSF 331

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
           +I    N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A 
Sbjct: 332 DISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAA 391

Query: 405 LSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           + LL    G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A 
Sbjct: 392 MVLLGEAVGFTLSLAGIAGAIVAIGVTTDSFIVYFERIRDEIREGRTLRTALQTGWAKAR 451

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            TI  ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 452 GTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFW 511



 Score = 95.1 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 330 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 388

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 389 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTTDSFIVYFERIRDEIRE---GRTLRTALQT 445

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 446 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 505

Query: 824 YDWR 827
              R
Sbjct: 506 GRTR 509


>gi|222106583|ref|YP_002547374.1| AcrB/AcrD/AcrF family protein [Agrobacterium vitis S4]
 gi|221737762|gb|ACM38658.1| AcrB/AcrD/AcrF family protein [Agrobacterium vitis S4]
          Length = 1032

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/638 (12%), Positives = 175/638 (27%), Gaps = 40/638 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GLL           +   P                     L   +
Sbjct: 10  RPVATSLLGIAILLGGLL-----GYTSLPVAPLPQVDFPTIR---------VTTQLPGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S     +++TL F   R  +  A  V   +   
Sbjct: 56  PETMAALVTAPLERPLGQIPALASMTSSSAFGISQVTLQFNLDRDIDGAAQDVQAAINSA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L                 +  ++   +        + S         ++        
Sbjct: 116 SGSLPKTLPYPPTYAKVNPADTPTIT-LALHSDSYPIRDLSDFADTIMAQRLSEVSGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +   +  + D +RL     +   +       N S         +   +      
Sbjct: 175 VRVQGGVRPAIRIQADLTRLASYGMSLEDLRTAITNANVSGAKGAVDGTYQSFTLSANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++D                         D       +         ++ + L     G  
Sbjct: 235 IQDPEI--------------------YRDTIVTYSNSAPVRLRDVADVVEGLENSRVGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T+E        L+          +          S    
Sbjct: 275 YQGHPAVIVDIMRQPGANVIQTVEDVRKQLPRLKQALPAGVSLDIVNDRTDTIRASIHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T A+  GLV++V+F+ +      ++A  ++ L++I T  ++   G +L   S+  + +
Sbjct: 335 QWTLALSVGLVILVVFLFLRTLTATIIAAVALPLSLIATFGIMYFAGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           G G  VD  I++ E I     + +S   +   G      TI     + +   + L F   
Sbjct: 395 GTGFVVDDAIVMIENIARHIEEGESPMQAALKGAGEIGFTIISLTASLIAVFIPLLFMTG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ +++++S   ++++   M   I+  +  K  +   L       D + 
Sbjct: 455 IVGRMFREFALTLTIAVVVSAVISLTLTPMMCARIL--RAPKERNSGVLGMVDRGMDWMN 512

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             + R+  W V    L  + +   L   GL Y    KG + +         +    ++  
Sbjct: 513 EGYRRSVVWAVNRGWLMLVLTGVTLVITGLLYVTIPKGFLPVQDTGLISAVVETEPTSSF 572

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                  S        +  V+       + A    L  
Sbjct: 573 DAMKQTQSLVGNRLRADPAVQSVIAVIGTSASNLTLNT 610



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +  + +++++++R      + A   L L +  T G     G   +  ++ A+    
Sbjct: 338 LALSVGLVILVVFLFLR-TLTATIIAAVALPLSLIATFGIMYFAGFSLDNLSLMALTIGT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +      S      K   E     +  + +     +P+    
Sbjct: 397 GFVVDDAIVMIENI---ARHIEEGESPMQAALKGAGEIGFTIISLTASLIAVFIPLLFMT 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G V      FA+ +   +VV+A  S+ +  
Sbjct: 454 GIVGRMFREFALTLTIAVVVSAVISLTLTP 483



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 81/215 (37%), Gaps = 6/215 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + + S++           ++   V + +      + +  +  +K    +I   ++IQ   
Sbjct: 783 NAVASVKFTTAPLVISRDDQFPAVTISFDLARHASLSEAIAAIKSSERDISMPASIQRHY 842

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFAL 713
               +     +      ++ + I + I + + ++       I + +    +   L    L
Sbjct: 843 SGDTEEFDRSLAGEPWLILAAIITIYIVLGLLYESTIHPITILSTLPSAGVGALLALM-L 901

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG + ++ A+  ++ L+G    + +++ D            +S RD I K+        +
Sbjct: 902 FGQDLSIIALIGIVLLMGIVKKNAIMMIDFALD--AERKDGLSARDAIIKAAVMRFRPIM 959

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            T++AA    LP+A+  G+      IP+   I+  
Sbjct: 960 MTTLAALFGALPLALAQGTG-AELRIPLGISIIGG 993


>gi|52426142|ref|YP_089279.1| AcrB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308194|gb|AAU38694.1| AcrB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1021

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/684 (13%), Positives = 211/684 (30%), Gaps = 56/684 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL--E 59
           RN   +++L+ ++  +G+            ++  P+                 ++ +   
Sbjct: 11  RNPIPIIVLFLLLTIMGI-----RSFQALPINADPNISFPA-----------VNITISQT 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    ++  + +        S+ +  +  ++ F      +   + V   +
Sbjct: 55  GASPDELENSVTRRVEDAVAGMAGVRHITSSITEGTSTTSVEFRLETDTDRAVNDVRNAI 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +   L  +    ++     +  ++            +  E +  I      ++     
Sbjct: 115 TQIRGDLPQNIDNPIVERMDTEGAALGYYAVQSPN--MNQTELAWFIDDAVSCELLAVNG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q         ++      ++L  L  T  ++S      N +                 
Sbjct: 173 VQQVKRLGGEKREIRVALQSTKLNALEITAEQVSQQLAQTNANVPAGRVE---------- 222

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
            +  E  V + G  +N             + ++       R+        I    A +  
Sbjct: 223 WFNQEQSVRVIGSQINL----------DDLANLPIALSDNRKVKLSELATITDSHAEMRS 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L    +           S              L      I L      +V     + 
Sbjct: 273 RTRLNGREVLGFQVFRSKGSSDTVVESGIQQALKKLIETYPDIHLTE-VHNSVDTTRENY 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            +   T    A L ++V+++ +   +  LVA  ++ L+++    ++ LLG TL   S+  
Sbjct: 332 DVAISTLLEGAALTVLVVWLFLRNWRATLVAAIALPLSILPAFWIMKLLGYTLNSISLLA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLD---MGFSRAYSTIFDSNITALIATVV 476
           I L IG+ VD  I+  E I    ++ +  F +          A   I  S +   +    
Sbjct: 392 ITLVIGILVDDAIVEIENIETHMQQGKRPFQAALDASDAIGLAVVAITASIVAVFLPVSF 451

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL---SRFFL 533
           +    G     F  T+  ++L S+  A   +  +  ++++    K      +    + +L
Sbjct: 452 IDGMTGQYFGQFGTTVAAAVLSSLMVARLAIPLLAAYLLKPHISKHHTAQHVGRLKKSYL 511

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                A+QF +      G  +L S   I  L T  +  G      I + +  + P+  + 
Sbjct: 512 SLLAKALQFRKTTLLMGGGLLLMSAMIIPQLPTGFVPKGDTGMSQIDITLPPSSPLAQTD 571

Query: 594 ---------VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                    +R   E   +   +  +   +   L++L+     SV+Q    + ++ ++ +
Sbjct: 572 DMLQQLDRIIREFNEVDLVFTTAGSSEINKGEVLIKLKPYKERSVSQKEFEDKLRDELVK 631

Query: 645 IVPLSTIQNTEIVGPKISRELIRK 668
              +      E+ G  +S  L   
Sbjct: 632 FADIRANFRNEMAGRDVSILLTGN 655



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 80/240 (33%), Gaps = 8/240 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +  NR V LS + +  +S        +    E       + +          ++   
Sbjct: 246 PIALSDNRKVKLSELATITDSHAEMRSRTRLNGREVLGFQVFRSKGSSDTVVESGIQQAL 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           KK+ E  P   +                     +  +A+ +L+       W   L A   
Sbjct: 306 KKLIETYPDIHLTEVHNSVDTTRENYDVAISTLLEGAALTVLVVWLFLRNWRATLVAAIA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I        L G   N  ++ A+  +IG  V+D +V  + +     +      F+ 
Sbjct: 366 LPLSILPAFWIMKLLGYTLNSISLLAITLVIGILVDDAIVEIENI--ETHMQQGKRPFQA 423

Query: 760 LIDKSINETLGRSVYTS--MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +D S    L     T+  +A F+ V  +    G   G F   +A  ++    SS+ +A 
Sbjct: 424 ALDASDAIGLAVVAITASIVAVFLPVSFIDGMTGQYFGQFGTTVAAAVL----SSLMVAR 479



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 68/178 (38%), Gaps = 7/178 (3%)

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
                  +   E+  +    +      +L+ + + FK +      +T L L I        
Sbjct: 827  PSAGDAEYMDEMFSQFGFAMATGVAMVLLVLILLFKDFLQPFTILTALPLSIGGAALGLL 886

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L+G   ++++V  +L L+G    + +++ D + +  +      +    + +S  E +   
Sbjct: 887  LYGAALDMSSVIGILMLMGIVTKNSILLVDFVIEKRQQGVERTT---ALIQSGAERVRPI 943

Query: 773  VYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + T++A    ++P    GG+        AI +  G+  +   S+     +   + D R
Sbjct: 944  IMTTIAMVAGMIPAVFAGGASAAFRAPMAIAVICGLTASTLLSLVFVPVVYSLMDDMR 1001


>gi|332712023|ref|ZP_08431953.1| cation/multidrug efflux pump [Lyngbya majuscula 3L]
 gi|332349351|gb|EGJ28961.1| cation/multidrug efflux pump [Lyngbya majuscula 3L]
          Length = 1123

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/495 (11%), Positives = 144/495 (29%), Gaps = 34/495 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           Q  +DR P+      +           +         +   +    ++  + L       
Sbjct: 2   QLGIDRLPNIDLPAVM---------VTVTQPGAGPAELEFQVTKKVEDAVASLGNIDQIS 52

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            ++    ++  ++F          + V   +  +   L +D  + ++        S++  
Sbjct: 53  STVTDGSSRTVINFVLGTDSNQATNDVRNAVAQIRQSLPLDINEPIVRRLEFSGGSVMTY 112

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
               +       E S  + R+    +       Q      +  ++  + DP+RL+    T
Sbjct: 113 AVASN--KRSVEELSDLVDRKISRDLVNVPGVAQIDRLGGVDREIRVDLDPARLQAFGIT 170

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
             +++      N +  G    +     +       +   E+    +              
Sbjct: 171 ATQVNDQIRTFNVNLPGGRGNIGGAEQNVRTLGSAKTVEELKNYRIVLP----------- 219

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                            +   +      +     L    +           S     E  
Sbjct: 220 ---------DGANVPLSSLGEVTDGFGDLRKAAYLNGDSVVAFSVLRSTGSSLVSVEEGV 270

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                 L+          +      +   S      +  I + L +  + + +   +  L
Sbjct: 271 RKAVVQLKTTLPEDIELRLIFTRADSIRESYQATIDSLIIGSILTVFTVGIFLRNWRVTL 330

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   ++ L++I T  ++  L  TL   ++ G+ L +G  VD  I + E I +     +  
Sbjct: 331 ITAIALPLSIIPTFLVMKALNYTLNNMTLLGLGLAVGNLVDDAICMIENIDQHLDMGKKP 390

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAIS 505
             +   G       +  +  T +   + + F G   G   + F +T+ +S + S   A +
Sbjct: 391 MRAAWDGAREIGLAVVATTATIVAVFIPVAFMGGIPGQFFQPFGVTVAVSTMFSTLVATT 450

Query: 506 IVRAMMIFIIRYKKM 520
           +   +  ++++ K  
Sbjct: 451 MTPMLSAYLLKPKSK 465



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 79/260 (30%), Gaps = 7/260 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             ++ +     V LS +    +       +             L+      V+    +  
Sbjct: 213 NYRIVLPDGANVPLSSLGEVTDGFGDLRKAAYLNGDSVVAFSVLRSTGSSLVSVEEGVRK 272

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
              ++   +P               RE  +  I  +II +I  +  + I  + W   L  
Sbjct: 273 AVVQLKTTLPEDIELRLIFTRADSIRESYQATIDSLIIGSILTVFTVGIFLRNWRVTLIT 332

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L I  T           N   +  +   +G  V+D + + + + +++ +      
Sbjct: 333 AIALPLSIIPTFLVMKALNYTLNNMTLLGLGLAVGNLVDDAICMIENIDQHLDMGKK--- 389

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                     E     V T+       +P+A  G   G     F + +A   + +   + 
Sbjct: 390 PMRAAWDGAREIGLAVVATTATIVAVFIPVAFMGGIPGQFFQPFGVTVAVSTMFSTLVAT 449

Query: 814 FIAAPILLFIYDWRAKNARI 833
            +   +  ++   ++K  ++
Sbjct: 450 TMTPMLSAYLLKPKSKGLKV 469



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 66/173 (38%), Gaps = 8/173 (4%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAM-LIYIWIRFKWYFAL 694
               + +  + PL    + E  G     + I  G +  + +S + +  I + +   + +  
Sbjct: 888  AKVQSLPAMNPLPPGVSEEPSGDAKIMQDIFGGFLSALALSVLCIYAILVLLYNSFLYPF 947

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            G +  L L I   L    +   E  L A+  ++ L+G    + +++ D     +      
Sbjct: 948  GILVALPLSIGGALMGLLIGQKELALFALIGIVLLMGLVTKNAILLVDFA---LANQKEG 1004

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
             S    + ++    L   + TS++    ++P+A+     G V    A+ +  G
Sbjct: 1005 TSQFKAVIQAGVSRLRPILMTSVSTIAGMIPIALEWGADGEVRSPMALAVIGG 1057


>gi|238026668|ref|YP_002910899.1| Multidrug resistance protein MdtC [Burkholderia glumae BGR1]
 gi|237875862|gb|ACR28195.1| Multidrug resistance protein MdtC [Burkholderia glumae BGR1]
          Length = 1100

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 70/622 (11%), Positives = 170/622 (27%), Gaps = 46/622 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL       +       FP+                    L    
Sbjct: 10  RPIATTLLALGIALSGLFAFAKLPVSPLPQVDFPTIS--------------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVTSPLERHLGSIADVTEMTSTSSVGSARIILQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +                +   +   +
Sbjct: 116 RADLPASLKSNPTYKKVNPADSPIMV-LSVTSDTASPARLYDAASTVLQQALSQIDGIGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VDVSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N    +     D+                ++   +  + +  +
Sbjct: 217 --KGAIEFGPQRFQLYTNDQASSAAQYRDLVIAYRNGAAVRLSDVGSVVDSVEDLRNIGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +    +++       L+AG                   S +  
Sbjct: 275 ANGKRAVLVILYRSPGANIIDAVDSVKAALPQLQAGMPADVDVTPVLDRSKTIRASLTDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVGLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +S   +   G      T+   +++ +   + +     
Sbjct: 395 ATGFVVDDAIVVLENIARHIENGKSRRQAALDGAREVGFTVLSISLSLVAVFLPILLMSG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLSRF 531
             G   R FA+T+ L+I +S+  ++++   M   +           +  + ++   +   
Sbjct: 455 IIGRLFREFALTLSLAIGVSLVVSLTLTPMMCARLLPEADAHREEGRLARWLEGGFVRLQ 514

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +       R   + ++   ++  +  +      +     G +  G+ A++    
Sbjct: 515 RGYDASLLWALRHPRLILLSLAATVALNVLLYVKVPKGFFPQQDTGLMIGGIQADQSTSF 574

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
             ++     +     S  N   
Sbjct: 575 QAMKVKFSEMMRIVQSDPNVAS 596



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +  + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAVGLVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +      S R        E     +  S++     LP+ +  G 
Sbjct: 399 VVDDAIVVLENI---ARHIENGKSRRQAALDGAREVGFTVLSISLSLVAVFLPILLMSGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           +      FA+ ++  I V+   S+ +  
Sbjct: 456 IGRLFREFALTLSLAIGVSLVVSLTLTP 483


>gi|241759869|ref|ZP_04757969.1| AcrB protein [Neisseria flavescens SK114]
 gi|241319877|gb|EER56273.1| AcrB protein [Neisseria flavescens SK114]
          Length = 1070

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/593 (11%), Positives = 160/593 (26%), Gaps = 48/593 (8%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSF----LKK 83
            +  + ++PS                  + L           ++     +       ++ 
Sbjct: 28  QKLPISQYPSVAAPT-------------ITLTATYPGASAQVMEDSVLAVIERNMYGVEG 74

Query: 84  EGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                 S        ++L+F     +      V   L  V S L    ++  +  +  + 
Sbjct: 75  LDYMTTSANSSGSGSVSLTFTPETNENLAQVDVQNKLSEVLSTLPSTVQQYGVTVSKARS 134

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
             + +   + +       E +    R  + ++   +   Q          +    DP +L
Sbjct: 135 NFLQVVMLSSE--RQSIEEMNDYAQRNIVPELQRIDGVGQVRLFGAQR-AMRIWVDPKKL 191

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
           +    + A ++      N        G             V  + ++S            
Sbjct: 192 QNYNLSFATVTNALATQNIQISAGSIGSLPAAAGQTISATVTAQGQLS------------ 239

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    I          +      +   +        L                +  
Sbjct: 240 -TAEEFGNIILVSNTDGSNVYLKDVAKVSLGMQDYSSSTRLNGVNTTGMAVMLSNSGNAL 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T        A+L+          V          S      T      LV +V+++ + 
Sbjct: 299 ATATAVKEKMAVLQKYFPDGMSWKVPYDTSKFVEISIEKVIHTLLEAIVLVFLVMYLFLQ 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             ++ L+    + ++++   A +S +G ++ + ++  +VL IG+ VD  I+V E +    
Sbjct: 359 NIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENVERIM 418

Query: 443 -RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILI 498
             +  S   +      +    +       +   V L  F    G   + FA+TM  SI  
Sbjct: 419 ASEGLSPKAATKKAMGQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMAASIGF 478

Query: 499 SMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
           S F A+++  A+   +           +       +    +        +A    +    
Sbjct: 479 SAFLALTLTPALCATMLKPIQKGHHEEKKGFFGWFNKKFDNWTHGYEGWVAKVLRKTLRM 538

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            V    L  +     +         + +G + L V            + L  +
Sbjct: 539 MVVYIGLTVVGVFLFMRLPTSFLPTEDQGNLMLSVQLPAGATKERTDATLAQI 591



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 94/249 (37%), Gaps = 6/249 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   I +       V L  V      +Q    S +        +  +    G+++A    
Sbjct: 244 FGNIILVSNTDGSNVYLKDVAKVSLGMQDYSSSTRLNGVNTTGMAVMLSNSGNALATATA 303

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           ++     + +  P            K     I K I  ++ + + + + +++  +   + 
Sbjct: 304 VKEKMAVLQKYFPDGMSWKVPYDTSKFVEISIEKVIHTLLEAIVLVFLVMYLFLQNIRYT 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + +     F +  G+  N+  + A++ +IG  V+D +VV + +     + + 
Sbjct: 364 LIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIGIVVDDAIVVVENV--ERIMASE 421

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +S +    K++ +  G  +  +       +P+A++ G+       FA+ MA  I  +A 
Sbjct: 422 GLSPKAATKKAMGQISGAVIGITAVLMSVFVPLAMFSGATGNIYKQFALTMAASIGFSAF 481

Query: 811 SSIFIAAPI 819
            ++ +   +
Sbjct: 482 LALTLTPAL 490



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 58/156 (37%), Gaps = 17/156 (10%)

Query: 689  KWYFALGAITTLILDITKTLGFF------ALFG----IEFNLTAVAAVLTLIGYSVNDKV 738
                A+  +  L L I   LG        AL G       ++      +T++G S  + +
Sbjct: 893  SIPLAVILVIPLGL-IGAALGVTGRNMFEALLGSIPAYANDIYFQVGFVTVMGLSAKNAI 951

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---G 795
            ++ +  +    L     S  +    + +      + TS A  + V+P+ V  G+      
Sbjct: 952  LIIEFAKD---LQAQGKSALEAALAAAHLRFRPIIMTSFAFILGVVPLYVASGASSASQR 1008

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    + +G+++    S+F+     + +  +  + A
Sbjct: 1009 AIGTTVFWGMLIGTILSVFLVPLFYVVVRKFFKETA 1044


>gi|330860643|emb|CBX70939.1| putative aminoglycoside efflux pump [Yersinia enterocolitica
           W22703]
          Length = 940

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/477 (13%), Positives = 135/477 (28%), Gaps = 23/477 (4%)

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
            +V   LQ    KL  D ++  +  +   + ++++             + +  +     D
Sbjct: 2   QQVQNQLQSAIKKLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDIADYVASNLQD 61

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
            +   E              +    DP++L     TT  +       N+       G   
Sbjct: 62  PLSRIEGVGSIDAFGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGTP 120

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
             D+      +  + ++                 +                      I  
Sbjct: 121 SVDNQALNATINAQSQL-------------QTPEQFREITLRVNQDGSLVTLGDVAKIEM 167

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                           +       +  +   T E      A L           +     
Sbjct: 168 GAEKYDYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPHGLEAKIAYETT 227

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S      T      LV +V+++ +   +  L+   ++ + ++ T A+LS  G ++
Sbjct: 228 PFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAFGFSI 287

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
              ++  IVL IGL VD  I+V E +    + +      +     S+    +    +   
Sbjct: 288 NTLTMFAIVLAIGLLVDDAIVVVENVERVMSEEGLDPREATRKSMSQIQGALVGIALVLS 347

Query: 472 IATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + + FFGG      R F+IT+  ++++S+  A+ +  A+         +K I     
Sbjct: 348 AVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPALCAT-----MLKPIKPGHH 402

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                        F R               S+  +  + L  G      I+L    
Sbjct: 403 HAKRGFFGWFNRMFDRNAHRYERGVAQVLHRSVRYMLLYLLLLGGLALLFIKLPTSF 459



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 88/235 (37%), Gaps = 6/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D   +      + +        + +    +++    ++T   P 
Sbjct: 157 VTLGDVAKIEMGAEKYDYLSRFNGQPASGMSIKLASGANELQTDELVKARIAELTPFFPH 216

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                         +  I+  +  ++ + + + + +++  + +   L     + + +  T
Sbjct: 217 GLEAKIAYETTPFVKASIKDVVKTLLEAILLVFLVMYLFLQNFRATLIPTIAVPVVLLGT 276

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               + FG   N   + A++  IG  V+D +VV + +     +    +  R+   KS+++
Sbjct: 277 FAILSAFGFSINTLTMFAIVLAIGLLVDDAIVVVENV--ERVMSEEGLDPREATRKSMSQ 334

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             G  V  ++      +PMA +GG+       F+I +   +V++   ++ +   +
Sbjct: 335 IQGALVGIALVLSAVFIPMAFFGGTTGAIYRQFSITIVSAMVLSVLVALILTPAL 389



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 65/180 (36%), Gaps = 8/180 (4%)

Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
              E  G      L       +  IS + + + +   ++ W      +  + L +   + 
Sbjct: 750 FGLEWTGMSYQERLSGSQAPALYAISLLVVFLCLAALYESWSIPFSVMLVVPLGVIGAVA 809

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              + G+E ++     +LT+IG S  + +++ +   +   L        +   ++    L
Sbjct: 810 ATWMRGLENDVYFQVGLLTIIGLSAKNAILIVEFASE---LNNKGKDLVEATLEASRLRL 866

Query: 770 GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              + TS+A    VLPMA+    G     +    +  G++ A   +IF      + +   
Sbjct: 867 RPILMTSLAFIFGVLPMAISQGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLVRRR 926


>gi|239831102|ref|ZP_04679431.1| acriflavin resistance protein [Ochrobactrum intermedium LMG 3301]
 gi|239823369|gb|EEQ94937.1| acriflavin resistance protein [Ochrobactrum intermedium LMG 3301]
          Length = 1050

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/516 (11%), Positives = 154/516 (29%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       +++  D +G         
Sbjct: 19  RRPVFAFVINVLIVVAGLAA-----FTGVDIRELPDVDRP-VVTISTDFKG--------A 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  L    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 65  SAETIDRQLTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + +  +   + ++       +++      D       + ++ +  Q  D +       
Sbjct: 125 VANDVPEEADPSRIIKADSNADAVMRLAVTSD--TMSVDDMTVLVEDQIQDILSAVPGVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + + +RL     T A ++                            
Sbjct: 183 DVQINGDRDKIFRIDINQARLASYGLTIADITKALSSMGLDAPAGSLRSADQSIVVRATA 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   ++++G T                               +     +     
Sbjct: 243 NLEKPEDFENVYISGRTQI------------------------RDVATVTLGPDIESSAV 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +     E      A L+          V   +     G+   
Sbjct: 279 RSNGKTAIGLGIVRQAQSNTLDISEGIRAAVANLQKTLPAGVNIAVTSDDANFINGAIHE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L G ++ + ++  +V
Sbjct: 339 VEIALIASVIIVVAIIFMFLWDIRATLIPALSMPVALIGTIAAIYLAGFSVNILTLLALV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 399 LATGLVVDDAIVVLENVVRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 458

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              GG  R F   + +++L+S   A+++   +    
Sbjct: 459 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRF 494



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 83/241 (34%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  +    +  V +      I   + ++       L  ++    +++  +  +      +
Sbjct: 253 VYISGRTQIRDVATVTLGPDIESSAVRSNGKTAIGLGIVRQAQSNTLDISEGIRAAVANL 312

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLI 701
            + +P                  I +  + +I S I ++  I    +     L    ++ 
Sbjct: 313 QKTLPAGVNIAVTSDDANFINGAIHEVEIALIASVIIVVAIIFMFLWDIRATLIPALSMP 372

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T+    L G   N+  + A++   G  V+D +VV + +   ++     +  R   
Sbjct: 373 VALIGTIAAIYLAGFSVNILTLLALVLATGLVVDDAIVVLENV---VRRRNQGMGPRAAA 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                E     + T++      +P++      G +   F   +A  +++++  ++ +   
Sbjct: 430 VLGTQEVFFAVIATTLTLAAVFVPISFLPGQAGGLFREFGFVLAIAVLLSSVVALTLCPM 489

Query: 819 I 819
           +
Sbjct: 490 L 490



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 86/239 (35%), Gaps = 9/239 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            + S+            ++    R      +      + +  K       PL    +  I 
Sbjct: 786  MSSIASVVEKAVPPQLDRETRQRSVSITTNLRDDFALGDAYKAAQEIAAPLLPPGSHIIP 845

Query: 658  GPKISRELIRKGIVGVIISA--IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              + S        + ++     I +L+ +  +F+ +  AL  + T+ L +   +    L 
Sbjct: 846  LAEASTLSETSSGLAMVFGFAIIIILLVLAAQFESFVSALIVMATVPLGLGCAVFAMLLT 905

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ +   ++ L+G    + +++ +      +L    +S R+ I+++ N  L     
Sbjct: 906  GTSLNVYSQIGLVLLVGIMAKNGILIVEFA---DQLRDKGLSVREAIEEASNIRLRPVCM 962

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            T + A +  +P+ +    G     +    +  G+ +A  +++++     L +  +    
Sbjct: 963  TMICAVLGGVPLILASGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTQPK 1021


>gi|117919532|ref|YP_868724.1| acriflavin resistance protein [Shewanella sp. ANA-3]
 gi|117611864|gb|ABK47318.1| acriflavin resistance protein [Shewanella sp. ANA-3]
          Length = 1051

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/658 (8%), Positives = 174/658 (26%), Gaps = 40/658 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  GL+        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGLVS-----FTKLSVREMPDVESPVVT---------VSTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SAAIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPEDANDPVVSKDNGSGEPSVYVNLSSS--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   +                          N  
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDIINALRKE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 214 TPGGQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNLSLGVITQSDANPLIVAQEVHKEVDRIQDFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++ G ++ L ++  ++
Sbjct: 334 VYNTLYVTGALVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  +    ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVVENIFHHIERGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S+L S   A+++   +   +++     +     +   F   + +
Sbjct: 454 GMVGLLFTEFSVMLAVSVLFSSLIALTLTPVLSSKLLKANVKPNRFNRFVDSGFARMEKV 513

Query: 539 AIQF--MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    RF  +   ++ +           +   +  +    +     +  + +    
Sbjct: 514 YRVGVTQAIRFKWLAPLVILACVGGSAWLMQQVPSQLAPQEDRGVLFAFVKGAEGTSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              ++ I +       G+          P            V  ++ +          
Sbjct: 574 MTANMDIVEDRLMPLLGQGVLRSFSVQAPAFGGRAGDQTGFVIMQLEDWEHRHVTAQQ 631



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 89/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IV 671
             + L            V + V K++  I        + +V    +  + R        +
Sbjct: 279 VNLSLGVITQSDANPLIVAQEVHKEVDRIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        +FG   NL  + A++  IG
Sbjct: 339 YVTGALVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVLFSSLIALTLTPVLSSKLLKANVKPNR 498



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 12/134 (8%)

Query: 699  TLILDITKTLGFFA-LFGIEFNLTAV-----AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L++  T  +G F    G+      +       ++ LIG    + +++ +      +L  
Sbjct: 878  PLVVMFTVPMGVFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFAN---QLRD 934

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              ++    I  +    L   + T+    +  +P+      G     +    + FG+  A 
Sbjct: 935  RGLALDKAIIDASTRRLRPILMTAFTTLVGAVPLIFSSGAGSESRIAVGTVVFFGMAFAT 994

Query: 810  SSSIFIAAPILLFI 823
              ++F+   +   I
Sbjct: 995  FVTLFVIPAMYRLI 1008


>gi|16761056|ref|NP_456673.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141247|ref|NP_804589.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213163029|ref|ZP_03348739.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|289826372|ref|ZP_06545484.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|60390133|sp|Q8Z5F7|MDTB_SALTI RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|25323698|pir||AD0771 probable RND-family transporter protein STY2340 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503354|emb|CAD02490.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136873|gb|AAO68438.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 1040

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSSVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRKLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSRQSLRKQNRF 510



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 62/164 (37%), Gaps = 7/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G +   FA+ +A  I+++A  S+ +   +   +   ++   
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSRQSLRK 506


>gi|121606790|ref|YP_984119.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
 gi|120595759|gb|ABM39198.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
          Length = 1044

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/621 (12%), Positives = 169/621 (27%), Gaps = 43/621 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N    V+L+ ++   G+L           +  FP                     L   
Sbjct: 9   KNPIPAVMLFVLLAFGGMLS-----FNAMKVQNFPDIDLPTV---------SVSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + ++     +  ++     +T  F   +  +   D V   +  
Sbjct: 55  APAQLETEVARKLENSIATVQGLKHIMTKVQDGGVSVTAEFRLEKPVQEAVDDVRSAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D +  ++         I+     I      A   S  +      ++       
Sbjct: 115 VRSDLPADVRDPVVTKVDLAGQPIL--AFTIASSRMDAEALSWFVDNDISRKLLAVRGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    D S+L+ L  + A +S           G    +           
Sbjct: 173 AVNRVGGVTREVRVALDASKLQALGASAADISRQLKQVQTESAGGRTDLGGSEQPVRTLA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   E+  + L                         RR        +   ++      
Sbjct: 233 TVKSAQELGALELAL--------------------GDGRRIRLSDVATVSDTVSEPRSAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     +     S            A L+A    + L       V         
Sbjct: 273 LLDGKPVVGFEVARSRGESEVTVGNAVQSALADLKAQHPDLVLTE-AFNFVQPVQEEYDG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +   V+  ++ L+VI     + LLG ++ + ++  + 
Sbjct: 332 SMHLLYEGAILAVLVVWLFLRDWRATFVSAVALPLSVIPAFIGMQLLGFSINVITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVIGILVDDAIVEVENIVRHLRMGKTPYQAAMEAADEIGLAVVATTFTLVAVFLPTAFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL---IP 535
              G   + F  T  L+++ S+  A  +   M  +I++       +   L  +       
Sbjct: 452 GIAGKFFKQFGWTAALAVIASLVVARVLTPMMAAYILKPIVGDHREPGWLKVYIRAAGWC 511

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +  M         SIL              N        +Q G    +    +   
Sbjct: 512 LQHRVVTMVMATLFFVGSILLIPLLPTGFIPPDDNSQTQVYLELQPGSTLKQTEAAAEQA 571

Query: 596 SNLESLQIGDISFQNFDGEKN 616
             + +      S     G   
Sbjct: 572 RLMIAKVEHVRSVYTTIGGGT 592



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 66/236 (27%), Gaps = 13/236 (5%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           ++       V     +  +       F+  ++             +    L+     +  
Sbjct: 256 SDVATVSDTVSEPRSAALLDGKPVVGFEVARSRGESEVTVGNAVQSALADLKAQHPDLVL 315

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
               + +Q  +         L    I+ V++              W     +   L L +
Sbjct: 316 TEAFNFVQPVQEEYDGSMHLLYEGAILAVLVVW-------LFLRDWRATFVSAVALPLSV 368

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
                   L G   N+  + A+  +IG  V+D +V  + +   ++      +      ++
Sbjct: 369 IPAFIGMQLLGFSINVITLLALSLVIGILVDDAIVEVENI---VRHLRMGKTPYQAAMEA 425

Query: 765 INETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +E     V T+       LP A      G     F    A  ++ +   +  +  
Sbjct: 426 ADEIGLAVVATTFTLVAVFLPTAFMSGIAGKFFKQFGWTAALAVIASLVVARVLTP 481



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 80/192 (41%), Gaps = 13/192 (6%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            EI   ++  EL     + ++   + + I + + FK +   +  +  L L +        +
Sbjct: 832  EIGDAEVMGELFASFGLAMLTGVLCIYIVLVLLFKDFLHPVTILAALPLSLGGAFVGLLI 891

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYT--TSISFRDLIDKSI 765
                F++ ++  ++ L+G +  + +++ +      R       +     +S RD +  + 
Sbjct: 892  ADKSFSMPSLIGLIMLMGIATKNSILLVEYAIVARRGHDGSDGHPVVAGMSRRDALLDAC 951

Query: 766  NETLGRSVYTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVVAASSSIFIAAPILL 821
            ++     + T++A    +LP+A+  G+   SF    A+ +  G++ +   S+ +   +  
Sbjct: 952  HKRARPIIMTTLAMGAGMLPIALGFGAADSSFRSPMAVAVIGGLITSTVLSLLVVPAVFT 1011

Query: 822  FIYDWRAKNARI 833
            ++ D      R+
Sbjct: 1012 YMDDLEQFIRRM 1023


>gi|85708219|ref|ZP_01039285.1| putative acriflavin resistance protein D [Erythrobacter sp. NAP1]
 gi|85689753|gb|EAQ29756.1| putative acriflavin resistance protein D [Erythrobacter sp. NAP1]
          Length = 1034

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/611 (9%), Positives = 164/611 (26%), Gaps = 46/611 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R   +  +L + +  +GL+        +  +D FP                   +   L 
Sbjct: 13  RRPVFATMLIASLVVLGLVS-----FNRLGVDLFPKVEFPY-----------VSVTTALP 56

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +E  + +        +  +  + + L F      +  A +V   +
Sbjct: 57  GASPGTVETEVTDIVEEQLNTIAGLRQMRSTSAEGVSIVNLEFELEEDADVKAQEVRDKM 116

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             + + L  D +  ++         I+    + D     A + +     +  +++     
Sbjct: 117 SRLGADLPADSESPVIEKVDPDAAPILSVLMSGD---MPARDLTAFADEEVKERLQRVPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       ++    D + +R    T   +       N+   G              
Sbjct: 174 VGSVELVGGRKREMRIWLDAAAMRARGVTADDVLGAIQRENSELPGGR------------ 221

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             + E +    G+ +     +       P+          +         +   +     
Sbjct: 222 -LVTEGRARQFGVRILAEAESAAEFAAIPIA----YRPNGQTVRIGDVGRVEDSIEDEAS 276

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L            ++  +     E        LRA +      ++          + 
Sbjct: 277 YAQLDGEPGVVLEVRKQSGENTVAVAEHIRADIEELRASAPESVTFVIARDTSRFIEQAI 336

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   I   LV+ V F+ +L  +  ++   +I  +++ +    +    T+ + ++  
Sbjct: 337 GDVLFDLLIAVVLVVAVTFLFLLSWRATIIVLLAIPTSIVASFIAFAAFDFTINMVTLLA 396

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + + IGL VD  I+V E ++ +  +      +      R    +       L   V + F
Sbjct: 397 LTVAIGLLVDDAIVVVEAVQNDVDEGADATGAAHAATKRVALAVLAGTFATLAVFVPIAF 456

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRF 531
                G     + + +  S+ +SM  A ++  A+   +             I+   +   
Sbjct: 457 MEGIVGRFFFQYGLAIVFSVSVSMLVAFTLTPALSARLLRPEEKESGWFARIERFHVGMR 516

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 ++    R      G      +                 +    + +       +
Sbjct: 517 QRYERLVSWAIRRRYVVLGGALASVFVGGGFAALVPSTFMSTTDRSEFLVTIKLPLGTGI 576

Query: 592 SVVRSNLESLQ 602
           +  +   + + 
Sbjct: 577 AGAKDAAQQVD 587



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 6/150 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   +  +  +   I  +   FA F    N+  + A+   IG  V+D +VV + +
Sbjct: 356 LFLLSWRATIIVLLAIPTSIVASFIAFAAFDFTINMVTLLALTVAIGLLVDDAIVVVEAV 415

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPM 801
           + ++     +        K         +  + A     +P+A   G V   F    + +
Sbjct: 416 QNDVDEGADATGAAHAATK---RVALAVLAGTFATLAVFVPIAFMEGIVGRFFFQYGLAI 472

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            F + V+   +  +   +   +     K +
Sbjct: 473 VFSVSVSMLVAFTLTPALSARLLRPEEKES 502



 Score = 38.1 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 62/174 (35%), Gaps = 7/174 (4%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
           +  ++  +    P + +        +   E     I   I++ +A+ I +  +F  +   
Sbjct: 826 VSDLEGLLAANPPPAGLSTQMEGTARRLAETSEAIIFAFILAIVALYIVLASQFNSFGQP 885

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  + T  L  +         G E +L A   ++ L+G  + + +++ DR     +    
Sbjct: 886 IIIMLTAPLSFSGAYFLMWAAGQEMSLFAQIGMIALMGIVMKNGILLVDRAN---QFRDA 942

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +  +  E L   + T++AA   ++P+A+               +  G
Sbjct: 943 GKDAAAAMRDAAPERLRPVLMTALAAVFGMMPVALAQSDAAEWRNPMGFIIIGG 996


>gi|218259613|ref|ZP_03475291.1| hypothetical protein PRABACTJOHN_00950 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224979|gb|EEC97629.1| hypothetical protein PRABACTJOHN_00950 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1062

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/700 (10%), Positives = 182/700 (26%), Gaps = 63/700 (9%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
                ++   I  +G++      L    ++++P   P                 ++V   
Sbjct: 1   PILSAVISISIVVVGII-----GLFTLPVEQYPDIAPP---------------TIQVSTT 40

Query: 64  ---DFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                    L+     L   +   E +   +          IT+ F      +  A  V 
Sbjct: 41  YFGASAETLLKSVVAPLEEAINGVEDMTYMTSSASNAGTVSITVYFKQGTDPDMAAVNVQ 100

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  +  +  + T+  +   + +               S  I       I  
Sbjct: 101 NRVSKATGQLPAEVTQVGITTSKRQTSILQMFSLYSPNDSYDEKFLSNYISINLKPSILR 160

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +     +        +     P  + Q     + ++      N       FG       
Sbjct: 161 IQGVGDMMIMG-GDYSMRIWMKPDVMAQYKLIPSDVTQVLAEQNIESATGSFGENSDETY 219

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                     +                   +    +             T  +I      
Sbjct: 220 QYTMKYKGRLI----------------TPEEFGEIVIRSTEDGEVLKLKTIADIEMGEET 263

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +        +    A  +     +         R              +     
Sbjct: 264 YAYHGGMDGHPGVSCMIFQTAGSNATEVNQNIDAFLEEARKDLPKGVELTQVMSSNDFLF 323

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+++ +   +  ++    I +++I T A +S+ G ++ L +
Sbjct: 324 ASIHEVVKTLFEAILLVILVVYVFLQDIRSTVIPLVGIVVSLIGTFAFMSIAGFSINLIT 383

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  +VL IG  VD  I+V E ++         S   S+D     + + I  S +   +  
Sbjct: 384 LFALVLVIGTVVDDAIVVVEAVQARFDVGYRSSYMASIDAMKGISNAVITSSLVFMAVFI 443

Query: 475 VVLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYK 518
            V F  G        F +TM +++ IS   A+++  A+                     +
Sbjct: 444 PVSFMSGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALFLKPYINEDGTQNNNFAAR 503

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
             K+ ++   S        +     R       ++    + +  +  T       + +G 
Sbjct: 504 FRKAFNVAFDSMVEKYKKGVLFFIKRKWMVWSLLACSIVLLAFLMNTTKTSLVPDEDQGV 563

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + V       L      ++ ++               +       G   +   ++  +
Sbjct: 564 VFVNVSTAAGSSLKTTDDVMKRIEQRLEGIPQVL-HVQKVSGYGLLAGQGNSFGMLILKL 622

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           K           +Q        ++ ++    +  +    I
Sbjct: 623 KPWDERTGKGEDVQAVIGQVYGMTADIKDASVFAISPGMI 662



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 93/280 (33%), Gaps = 9/280 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S   +               I  +   ++ + +    ++  +++  +     +    +  
Sbjct: 210 SFGENSDETYQYTMKYKGRLITPEEFGEIVIRSTEDGEVLKLKTIADIEMGEETYAYHGG 269

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            + +  V            T V + +   + E                 +  L       
Sbjct: 270 MDGHPGVSCMIFQTAGSNATEVNQNIDAFLEEARKDLPKGVELTQVMSSNDFLFASIHEV 329

Query: 673 VIISAIAMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           V     A+L+ I + +         +  +  +++ +  T  F ++ G   NL  + A++ 
Sbjct: 330 VKTLFEAILLVILVVYVFLQDIRSTVIPLVGIVVSLIGTFAFMSIAGFSINLITLFALVL 389

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           +IG  V+D +VV + ++    +   S     +   ++       + +S+      +P++ 
Sbjct: 390 VIGTVVDDAIVVVEAVQARFDVGYRSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSF 447

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             G+       F + MA  + ++A +++ ++  +      
Sbjct: 448 MSGTSGTFYTQFGLTMAVAVGISAVNALTLSPALCALFLK 487



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/253 (13%), Positives = 77/253 (30%), Gaps = 12/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E  ++
Sbjct: 781  VRMSNEEMSPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPAEGYSTGDAIRAVKETAEQ 840

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     + +  +I  GI  ++I  I   +Y      +      +  +
Sbjct: 841  ALPKGYGYDFGGITREENTQSNTTIIIFGICFLMIYLILSALY----ESFLIPFAVLLAV 896

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRD 759
               +  +  F  + G+E N+     ++ LIG      +++     +         +S   
Sbjct: 897  PFGLAGSFLFAKMMGLENNIYLQTGLIMLIGLISKTAILLT----EYAAERRKAGMSLTS 952

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +    L   + T+      +LP+ V    G +   S       G+++   + +F+ 
Sbjct: 953  AALSAAKARLRPILMTAGTMIFGLLPLMVATGVGANGNSSLGTGTVGGMLIGTLALLFVV 1012

Query: 817  APILLFIYDWRAK 829
              + +     + K
Sbjct: 1013 PSLFIVFQYLQEK 1025


>gi|86360100|ref|YP_471989.1| efflux cation transporter protein [Rhizobium etli CFN 42]
 gi|86284202|gb|ABC93262.1| probable efflux cation transporter protein [Rhizobium etli CFN 42]
          Length = 1050

 Score =  157 bits (395), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/517 (13%), Positives = 154/517 (29%), Gaps = 40/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ M+   GLL        Q  +  FP       I+            LE  
Sbjct: 9   RNPVPAILLFLMLTVGGLLA-----FKQLPIQNFPDMDLPT-IN--------VTATLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L        ++      I +SF   +  E   ++V   +  
Sbjct: 55  APAQLETEVARKIEDSLAALSYLDHITTTITDGTVSIKVSFKLEKDSETALNEVRNAVDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    +   +   T +  ++V        +     E S  +       +       
Sbjct: 115 VKGDLPAQMETPSVSKVTVQSSALVTYAVRSTALNE--TELSWFVDNDLTKALLSVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      I  ++  + D   +  L  T A +S           G +  +   R +     
Sbjct: 173 QVNRIGGIDREVHVDLDAGTMASLGVTAATVSSQLKAVQTDTSGGLGEIGGTRQTLRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     + G                    +       ++       ++    A      
Sbjct: 233 ALPSVEALKG--------------------LKIPLANGQQVRLDDVASVTDSFAERSSMA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           S +     A   A    A              +G  +G+   
Sbjct: 273 YLDGKPVIAVEIKRSNGFSDSGVAA-AVDQAVKQFAAKHSNVQIDEAYSTIGPIIGNYDG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+++ +   +  +++  ++ L+VI T  ++   G +L + ++  + 
Sbjct: 332 SMHMLYEGAILAIIVVWLFLRDWRATILSAVALPLSVIPTFLIMYFAGFSLNIVTLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    +  +    +     +     +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIARHLQMGKRPIDAALEAANEIGLAVIATTFTLVSVFLPTAFMR 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFII 515
           G      R F IT  +++L S+  A  +   M  + +
Sbjct: 452 GIPGLIFRQFGITAAVAVLASLVVARLLTPMMAAYFM 488



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 79/258 (30%), Gaps = 15/258 (5%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V  +    ++   +   S+   D         K            +V Q       K  
Sbjct: 252 QVRLDDVASVTDSFAERSSMAYLDGKPVIAVEIKRSNGFSDSGVAAAVDQAVKQFAAKHS 311

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             +I    +     I     S  ++ +G      + +A+++       W   + +   L 
Sbjct: 312 NVQIDEAYSTIGPIIGNYDGSMHMLYEG------AILAIIVVWLFLRDWRATILSAVALP 365

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +  T       G   N+  + A+  ++G  V+D +V  + +    +         D  
Sbjct: 366 LSVIPTFLIMYFAGFSLNIVTLLALSLVVGILVDDAIVEIENI---ARHLQMGKRPIDAA 422

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            ++ NE     + T+       LP A      G +   F I  A  ++ +   +  +   
Sbjct: 423 LEAANEIGLAVIATTFTLVSVFLPTAFMRGIPGLIFRQFGITAAVAVLASLVVARLLTPM 482

Query: 819 ILLFIYD---WRAKNARI 833
           +  +         K+ RI
Sbjct: 483 MAAYFMKAHPTEEKDGRI 500



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 73/179 (40%), Gaps = 8/179 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
            + S EL +   + + I    +   + + F  +   L  +  L L +   L    + G  F
Sbjct: 837  QRSSELFQSFALAMAIGVFCIYAVLVVLFHDFLQPLTLLMALPLSLGGALVPLVVTGTSF 896

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++ AV  +L L+G    + +++   +   +      +S  D +  + ++     V T++A
Sbjct: 897  SMPAVIGLLMLMGVVTKNSILL---IEYAIMSRHQGMSRFDALVDACHKRARPIVMTTIA 953

Query: 779  AFISVL--PMAVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                +L   +++ GG        AI +  G++++   S+ +   I  F+ D      R+
Sbjct: 954  MAFGMLPAALSLTGGDSSFRQPMAIVVIGGVIMSTLLSLIVIPVIFTFVDDLHEWLKRL 1012


>gi|149908201|ref|ZP_01896865.1| RND multidrug efflux transporter MexF [Moritella sp. PE36]
 gi|149808743|gb|EDM68676.1| RND multidrug efflux transporter MexF [Moritella sp. PE36]
          Length = 1056

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/694 (9%), Positives = 179/694 (25%), Gaps = 50/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  +    G +           +  +P  +P   +                 
Sbjct: 8   KRPIFAAVISLLFFISGAISV-----GLMPITEYPEVVPPTVV---------VSASYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++F      +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQAINGVENMLYMSSQATSDGLLTLTVTFEIGTDVDKAQSQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   E  
Sbjct: 114 RAVQRLPEEVQRLGVVTKKSSPDLTMVVHLIAPDNRYDMLYLSNYAALNVKDELARIEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    +P+++  L  + A +       N        G +         
Sbjct: 174 GAVNLFGASEYSLRIWLNPNKVASLGLSPADILKAVREQNKQAAAGSLGAQPSGADFQLL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+ ++                   +    I                 +          
Sbjct: 234 INVKGRL---------------STQEEFEDIIIRVGGQGEIIRLKDVARVEIGAQTYALR 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +        L           +         GS  
Sbjct: 279 SLLDNKEAVAMGVFQASGSNAIQISDDVRATMERLSLNFPDGLDYAIVYDPTVFVRGSIE 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + L+G +L   S+ G+
Sbjct: 339 AVVKTLFEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMYLMGFSLNALSLFGL 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +     +      +           I  + +      +   F 
Sbjct: 399 VLAIGIVVDDAIVVVENVERNIEEGLDPVAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 458

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------------- 522
               G   + FA+T+ +S  IS   ++++  A+   +++ +                   
Sbjct: 459 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKGRDEPKDRLTRAMDKLLGGWL 518

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                            +     RF G+   + F + ++  +       G       Q  
Sbjct: 519 FTPFNRLFNRASNRYTWLVRKVIRFGGIIGILYFGLVALTGVQFAQTPTGYVPGQDKQYL 578

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D S +      ++       +  G  + +                  +     
Sbjct: 579 VAFAQLPDASSLDRTEAVIRRMSDIALDHPGVLHSVAFPGLSINGFTNSPNSGIVFVTLD 638

Query: 643 TEIVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
                 +   +   +  +++ +   I    + + 
Sbjct: 639 EFENRTTADLSANAIAQQLNAKFAGIEDAFIAIF 672



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 57/146 (39%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   +    L+G + N+     ++ L+G +  + +++ +  ++  
Sbjct: 900  SLSLPLAIILIIPMTILSAISGVLLYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKE-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                + ++  D I ++    L   + TS A  + V+PM +    G  +  +  + +  G+
Sbjct: 958  -KQDSGMNTIDAILEAARLRLRPILMTSFAFIMGVVPMVLSTGAGAEMRQAMGVAVFSGM 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            +      + +       +     +N+
Sbjct: 1017 IGVTVFGLILTPLFYYALAKRGERNS 1042



 Score = 39.7 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 28/189 (14%), Positives = 73/189 (38%), Gaps = 9/189 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      +E +     + +  + + +  +        +++     V++  + +++++   
Sbjct: 303 SDDVRATMERLSLNFPDGLDYAIVYDPTVFVRGSIEAVVKTLFEAVLLVVLVVVLFLQTW 362

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N
Sbjct: 363 RASIIPL---VAVPVSLVGTFAFMYLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVERN 419

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
           ++     +       K++ E  G  V T++      +P A      G     FA+ +   
Sbjct: 420 IEE---GLDPVAATQKAMKEVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITIS 476

Query: 805 IVVAASSSI 813
             ++A +S+
Sbjct: 477 TFISAINSL 485


>gi|90423998|ref|YP_532368.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
 gi|90106012|gb|ABD88049.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
          Length = 1041

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/515 (12%), Positives = 146/515 (28%), Gaps = 40/515 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ + I   G+            +   P       I++   L G S   +   
Sbjct: 9   RRPVMTTLITASIIAFGIF-----GFRLLPVSALPKVDFPT-IAVTATLPGASADTMAAS 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   L        S +        S  Q  + IT+ F  +R  +  A  V   L  
Sbjct: 63  VAGVIERQL--------STIAGISSMSSSSSQGTSAITIQFDLNRNIDAAALDVQTALTI 114

Query: 122 VNSKLNVDPKKNLLVTTTEK-EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L ++             +  ++    +   +   A+  +          +      
Sbjct: 115 AQRRLPIEMTTPPSFRKVNPADFPVLFVSLSSATLPLSAV--NEYGDITIGQALSQVPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q +        +  + DP        +   +       N+S             S    
Sbjct: 173 AQVMIFGAQKFAIRVQADPEAAAARGLSLEDIRTAVARANSSTPVGTLNGPKQDISLQAS 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++  V+                       I                 I   +      
Sbjct: 233 GQMDKAVD--------------------YRHIVVAWRNGSPVKLDEVARIYDSVENDKIA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +    ++        LRA   P     V      +   + +
Sbjct: 273 TWLNDTRAIVLAIQKQPDANTVAVVDGVRAKLPGLRAQIPPSINVSVMMDRSVSVRQAVA 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  I   LV++V+F+ +       +   ++ ++++ T A++ +L  ++   ++  +
Sbjct: 333 DVEETLLIAVVLVILVIFLFLRSAWATFIPALAVPISLLGTCAVMYMLDFSINNMTLLAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I++ E I          F +   G      TI     + +   + +   
Sbjct: 393 TLSVGFVVDDAIVMLENIVRHIEHGMRPFEAALKGAREIGFTIISITFSLIAVFIPVLLM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           G   G   R FA+T+  +I++S F ++++   +  
Sbjct: 453 GGIVGRVFREFAVTIAAAIVVSGFVSLTLTPMLCA 487



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 63/151 (41%), Gaps = 7/151 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++I+ + +++ I++  +  +A       + + +  T     +     N   + A+   +G
Sbjct: 338 LLIAVVLVILVIFLFLRSAWATFIPALAVPISLLGTCAVMYMLDFSINNMTLLALTLSVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
           + V+D +V+ + +   ++     +   +   K   E     +  + +     +P+ + G 
Sbjct: 398 FVVDDAIVMLENI---VRHIEHGMRPFEAALKGAREIGFTIISITFSLIAVFIPVLLMGG 454

Query: 791 --GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             G V   FA+ +A  IVV+   S+ +   +
Sbjct: 455 IVGRVFREFAVTIAAAIVVSGFVSLTLTPML 485



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 85/235 (36%), Gaps = 6/235 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            +        N  G++  +               V E+ K +    +P++           
Sbjct: 790  VPTVGPLQINHQGQQPAVTISFNLAPGHSLGYAVDEITKIEAQSNLPVTIATGFSGTAQV 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
                L  +G++ +     A +I   +   +   +  I+ L       +    LF +E ++
Sbjct: 850  FQDSLRGQGVLILAAVFAAFVILGILYESFIHPITIISGLPSAGIGAILTLMLFNMELSV 909

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             A+  ++ L+G    + +++ D   +  +     +S    I ++        + T+ AA 
Sbjct: 910  IAMIGIVMLVGIVKKNAIMMVDFALERRRF---GLSAEQAIREAALLRFRPIMMTTFAAI 966

Query: 781  ISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               LP+A+    G  +     + +  G+ V+   ++FI   I +++  +  +  R
Sbjct: 967  FGTLPIALGAGAGAELRQPLGVAVVGGLCVSQLLTLFITPVIYIYLDKFDRRLKR 1021


>gi|114562207|ref|YP_749720.1| acriflavin resistance protein [Shewanella frigidimarina NCIMB 400]
 gi|114333500|gb|ABI70882.1| acriflavin resistance protein [Shewanella frigidimarina NCIMB 400]
          Length = 1034

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/580 (9%), Positives = 155/580 (26%), Gaps = 38/580 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  GL+        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGLVS-----FSKLSVREMPDVQNPVVT---------VMTTYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++I++ F            V   +  
Sbjct: 55  SATIMESKITKSLEDELTGISGIDEITSTTRNGMSRISIEFELGWDLTEGVSDVRDAVAK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +    ++          +    + +       + +    R   D+  +     
Sbjct: 115 AQRRLPDEADDPIVSKDNGTGEPSIYVNLSSEN--MDRTQLTDYAQRVLEDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     TT  +                          N  
Sbjct: 173 SVNISGGLYKVMYVQLKPQLMAGRNVTTNDIISALNTE-------------------NLE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 214 TPGGEVRNDTTVMSVRTKRLYYSPEDFNYLVVHTADDGTPIYLKDVASVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +              +++        +V+         S + 
Sbjct: 274 KSNGIVNLSLGIVPQSDANPLDISLQVQQEVDKVQSFLPKGTQLVVDYDANVFIARSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++VL++ +   +  L+   ++ +++I        LG ++ L ++  ++
Sbjct: 334 VYNTLFITGVLVILVLYIFIGQVRATLIPAVTVPVSLIAAFMAAYSLGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVVENIFHHIEQGEQPILAAYKGTREVGFAVISTTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S+L S   A+++   M   +++    K+     +   F   +  
Sbjct: 454 GMVGLLFTEFSVMLAMSVLFSSLIALTLTPVMSSKLLKANVKKNRFNIAIDNGFNRLEQR 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
               ++        +    I  I   +             
Sbjct: 514 YRSMVKWALHWRIAAPFIIIACIGGSYLLMQQVPSQLSPQ 553



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 6/162 (3%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I   + +L+      +    L    T+ + +          G   NL  + A++  IG  
Sbjct: 340 ITGVLVILVLYIFIGQVRATLIPAVTVPVSLIAAFMAAYSLGYSINLLTLMALILAIGLV 399

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+D +VV + +                  K   E     + T++   +  LP++   G V
Sbjct: 400 VDDAIVVVENI---FHHIEQGEQPILAAYKGTREVGFAVISTTLVLVMVFLPISFMDGMV 456

Query: 794 ---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 457 GLLFTEFSVMLAMSVLFSSLIALTLTPVMSSKLLKANVKKNR 498



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 61/163 (37%), Gaps = 9/163 (5%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGF--FALFGIEFNLTAV 723
             +  V ++ +   ++ Y+ +  ++  F   A+    + +    GF    L     N+ + 
Sbjct: 849  NQAGVLIVFALALLIAYLVLAAQFESFINPAVVMFTVPMGIFGGFIGLVLMHQGMNIYSQ 908

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++ LIG    + +++ +      +L    +S  + I  +    L   + T+    I  
Sbjct: 909  IGMIMLIGMVTKNGILIVEFAN---QLRDRGLSLDNAIIDASARRLRPILMTAFTTLIGA 965

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            +P+ V    G     +    + FG+  A   ++ +   +   I
Sbjct: 966  IPLIVSTGAGSESRIAVGTVIFFGMAFATVVTLLVIPAMYRLI 1008


>gi|303325557|ref|ZP_07356000.1| AcrB/AcrD/AcrF family protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863473|gb|EFL86404.1| AcrB/AcrD/AcrF family protein [Desulfovibrio sp. 3_1_syn3]
          Length = 1043

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/533 (12%), Positives = 149/533 (27%), Gaps = 32/533 (6%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
              + + +  +G+L           +++ P+      I +  DL G        D +   
Sbjct: 9   RRPVATALLMLGMLFFGVTGYLSLPVNQLPNVDFPT-IQVMADLAG-------ADPETMA 60

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
                    E  + +             + +IT+ FA  R  +  A  V   +     +L
Sbjct: 61  ASVATPLEKEFFT-IAGIDSISSVNAVGRTRITIQFALDRNIDAAALDVQSAIGLAQRRL 119

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                              +L             + +         ++ + E   Q +  
Sbjct: 120 PTSMTTPPSFRKVNPADMPILYLRVS-SPTLPLYQLNEYADTLIGQRLSMVEGVAQVVIY 178

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
            +    +  + DP  L        +++      N+              S  +   +   
Sbjct: 179 GQKKYAVRVQLDPDELASRGLGIDEVADAVAAANSMLPTGSLEGEQRASSIKSSGQLL-- 236

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
                                    +     GA                           
Sbjct: 237 -----------------NARAFRDTVVAYRNGAPVRLRDLGTVEDSVQQDKQISWSNGGV 279

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                    +   +    ++    L   L     P     V      +   S +  K T 
Sbjct: 280 PSITLAVERQPGTNTVQVVDAIRKLLPALERQVPPSVKVDVFYDRSESIRESVADVKFTL 339

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            +   LV++V+F+ +      ++   ++ ++VI T A++++LG +L   S+  + L +G 
Sbjct: 340 VLTVFLVVLVIFIFLRNLPATVIPSLALPMSVISTFAVMAVLGYSLDNLSLMALTLAVGF 399

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GG 483
            VD  I++ E I       +    +   G +    TI    I+     + + F G   G 
Sbjct: 400 VVDDAIVMLENIVRHQEMGKDPLRAAYDGSAEIGFTIVSMTISLAAVFIPVLFMGGIVGR 459

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             R FA+ +  +IL S   ++++   +  + ++  +        +        
Sbjct: 460 LFREFAVVIITAILCSGVVSLTLTPMLCAYFLKAGQKHKAGYEGMYGRLERMF 512



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 57/153 (37%), Gaps = 7/153 (4%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I+I++R      +     L + +  T    A+ G   +  ++ A+   +G+ V+D +V+ 
Sbjct: 350 IFIFLR-NLPATVIPSLALPMSVISTFAVMAVLGYSLDNLSLMALTLAVGFVVDDAIVML 408

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFA 798
           + +   ++                 E     V  +++     +P+   GG V      FA
Sbjct: 409 ENI---VRHQEMGKDPLRAAYDGSAEIGFTIVSMTISLAAVFIPVLFMGGIVGRLFREFA 465

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + +   I+ +   S+ +   +  +      K+ 
Sbjct: 466 VVIITAILCSGVVSLTLTPMLCAYFLKAGQKHK 498



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 92/241 (38%), Gaps = 6/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L  L  G          +   V + Y     VA ++ +  V+     ++P S    ++
Sbjct: 786  DTLAKLSPGVGPIAVNHNGQFPAVTISYNLRPGVALSQGVGAVEATARPLLPDSVTAESQ 845

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                     L   G + +I++ + + + + I ++ +   L  ++ L       L    LF
Sbjct: 846  GTAQAFQNSLQGMGWL-LILAIVVIYLVLGILYESFIHPLTILSGLPSAGFGALATLWLF 904

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+E +L     V+ L+G    + +++ D   +  +   + I+    I +  +      + 
Sbjct: 905  GLELDLYGFVGVIMLLGIVKKNAIMMLDFALEAQRRDPS-ITPLAAITEGCHVRFRPIMM 963

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+MAA +  LP+A+    G        + +  G+  +   +++I      ++  +  +  
Sbjct: 964  TTMAALMGALPIAIGIGAGAEARRPLGLAVVGGLCFSQIVTLYITPVYYYYMEKFSRRLN 1023

Query: 832  R 832
            R
Sbjct: 1024 R 1024


>gi|33865590|ref|NP_897149.1| preprotein translocase subunit SecD [Synechococcus sp. WH 8102]
 gi|33632760|emb|CAE07571.1| preprotein translocase subunit [Synechococcus sp. WH 8102]
          Length = 493

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 124/504 (24%), Positives = 222/504 (44%), Gaps = 57/504 (11%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDDFVN----GFLQMYSDELRSFLKKEGIGVFSMRQ 93
            + +  + LGLDLRGGS L ++V     V       ++     L   +   G+   +++ 
Sbjct: 21  FLIRTPLQLGLDLRGGSQLTVQVQPAGDVKVVGDREMEAVKAVLDRRVNGLGVAESTLQT 80

Query: 94  IQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
           +  +++ L     +     A  +               +         +  +  + Q   
Sbjct: 81  VGTDQLVLQLPGEQDPTAAARVLGDTALLEFRAQREGTEAEFRSLRQLQSQARAILQLRK 140

Query: 153 DQVIS--HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
           DQ        E ++E +++  + +G                          L     +  
Sbjct: 141 DQRRRGETPDELNLEDLKEVQESLG--------------------------LNADGASDD 174

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH-LNGATANFDPKTHKPV 269
           ++    +                  +D     + D  +++G   +           +   
Sbjct: 175 ELLQALLDQ----------------ADDELLTLLDPAQLTGKQLVTAGRQPLQNNPNSWE 218

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP-------SGKAQISGN 322
           V ++FD  GA  F ++T+   G    + +          +            G A ISGN
Sbjct: 219 VTLNFDAEGAEAFADLTQSIAGSDRLLAITLDNKLISAASVGPQFKSAGISGGAATISGN 278

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           F  ETA  L   LR GSLP+ + +VE R +G  LG+++I +   A ++GL L+ +FM+V 
Sbjct: 279 FDAETARELEVKLRGGSLPLPVEVVEVRTIGPTLGAENIRRSLMAALSGLALVAVFMVVA 338

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G VA  ++ L  +  L++ +L+  TLTLP IAG +L IG+AVD+N+L+ ERI++E 
Sbjct: 339 YRLPGAVAVAALSLYALFNLSVYALIPVTLTLPGIAGFILSIGMAVDANVLIFERIKDEL 398

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R+  ++  S+D GFS A+S+I D ++T LI+   LFF G G V+GFA T+G+ +L+S+FT
Sbjct: 399 RRGNTLIRSIDTGFSEAFSSILDGHLTTLISCAALFFLGTGLVKGFAATLGIGVLLSLFT 458

Query: 503 AISIVRAMMIFIIRYKKMKSIDIN 526
           A++  R ++ F++ Y  ++     
Sbjct: 459 ALTCTRTLLRFLMSYAGLRRPTYF 482



 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E IR+ ++  +     + +++ + ++   A+ A+  L L     L  +AL  
Sbjct: 307 TIGPTLGAENIRRSLMAALSGLALVAVFMVVAYRLPGAV-AVAALSLYALFNLSVYALIP 365

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++      +    ID   +E     +  
Sbjct: 366 VTLTLPGIAGFILSIGMAVDANVLIFERIKDELR---RGNTLIRSIDTGFSEAFSSILDG 422

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            +   IS   +   G  ++  FA  +  G++++  +++     +L F+
Sbjct: 423 HLTTLISCAALFFLGTGLVKGFAATLGIGVLLSLFTALTCTRTLLRFL 470


>gi|303237342|ref|ZP_07323912.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella disiens FB035-09AN]
 gi|302482729|gb|EFL45754.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella disiens FB035-09AN]
          Length = 1086

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 75/694 (10%), Positives = 204/694 (29%), Gaps = 47/694 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G +  +        ++++P   P   IS+  + +G        D
Sbjct: 8   KRPVLSTVVSIFFVLLGTIGLI-----SLPIEQYPDIAPPT-ISVMANYQG-------AD 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQ 120
               +N  +    + + + ++       +     +  IT+ F         +  V   + 
Sbjct: 55  AQTVLNSVITPLEESI-NGVENMTYIQSTATNSGSAMITVYFKQGSDPNMASVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  +  +  +  +  +  ++V+     D         +       +  +      
Sbjct: 114 QAQALLPAEVTRAGVTVSKRQTSNVVMYSLTTDDGRYDDEFLTNYNNINVVPLLKRINGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P +++Q     + ++      N       FG +    +   +
Sbjct: 174 GDVQTPGMKTYSMRIWLKPEKMKQYGLIPSDIAGALAEQNIEAAPGSFGEQ---SNMKYE 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +  K  +                 +    I  + +  +        ++     +    
Sbjct: 231 YTMRYKGRL-------------KTQKEYEDIIISNNVNGQTLHLRDVADVKLGGLMYSVS 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +         +    A  +     +        ++    P     +++        S  
Sbjct: 278 MLNNKQPSVVGMVQQIAGSNATQIAKDVKAALEDVQKNMPPGMKVTIQQDVTEFLFASME 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV  V+++ +   +  L+   ++ + +I +   L + G ++ L +++ +
Sbjct: 338 EVIFTLFITLLLVFFVVYIFLQDLRSTLIPMIAVPVALIGSFFFLWMFGFSINLLTLSAL 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVF--CSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +L I + VD  I+V E +  +           ++D     + + I  + + + +   V F
Sbjct: 398 LLAIAIVVDDAIVVVEAVHAKLDLGYKSALTAAIDAMNEISGAIISITLVMSAVFIPVSF 457

Query: 479 FFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFL 533
             G      R F +TM +SI+IS   A+++  A+   +      ++ K I          
Sbjct: 458 MSGTSGTFYREFGVTMAVSIVISALNALTLSPALCAILLKPHSEEEKKKISRVDRFHLAF 517

Query: 534 IPDCIAIQ---------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                 I           +  R       ++  +  +  + T       D   G+   ++
Sbjct: 518 NTQYEKINEKYKKTVEKIIGNRIITGISVVVGILALVITMATTKTGLVPDEDTGVLFAMV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +  P         +       +    +   +  L+   +  G    Q   +  +K     
Sbjct: 578 SLEPGMSQTETKKVTEQIDKMLETNPYVERRVQLIGYNFIAGQGSDQATFIIKLKPFEER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +     +   G  I+   I      +I+  I
Sbjct: 638 KYSMFDRIKSVFNGAGIAGLFIDPTSSNMILGMI 671



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/384 (9%), Positives = 103/384 (26%), Gaps = 30/384 (7%)

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            ++A       G     G  ++M       +    +I +  +  +    ++ +        
Sbjct: 683  VLAFGPPMVPGFSVSNGLTMSMQDRTGGDLNKFFTITQEYLAALKERPEIGNAMTTYNPN 742

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG---------------IDF 575
            +      I +   +         +         ++    N                 I+ 
Sbjct: 743  YPQYMVDINVARAKQSGTSPAAILSVLQGYYGGMYASNFNAYGKLYRVMIQGSVESRINP 802

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
             G   + V     +        L+ +       +        +         S    + +
Sbjct: 803  DGLNNIYVRTPGGMAPVSEFCTLKRVYGPSNIARFNLFTAITVNAQAADGYSSGDAIKAV 862

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            E V  +                  + S          +I     + +Y+ +      +  
Sbjct: 863  EEVAAQKLPPGYTYEFSGLTRSEQESSNS------TAMIFVLCLVFVYLILSAQYESYLL 916

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I ++   +     F  LFG   ++    +++ LIG    + +++ +   +      
Sbjct: 917  PLAVILSIPFGLAGAFIFTMLFGHNNDIYMQISLIMLIGLLAKNAILIVEFALE---RRR 973

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAA 809
            T ++ +          L   + TS+A  + +LP+    G               G+++  
Sbjct: 974  TGMAIKYAAILGAGARLRPILMTSLAMVVGLLPLMFASGVGRNGNQTLGAAAVGGMLIGT 1033

Query: 810  SSSIFIAAPILLFIYDWRAKNARI 833
               +FI   + +     + +   I
Sbjct: 1034 LCQVFIVPSLFVIFQYLQERIKPI 1057



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 59/437 (13%), Positives = 141/437 (32%), Gaps = 16/437 (3%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD-MGFSRAYSTI 463
           ++ + +T T    A I +      D N+          +   S   +L     +RA  T+
Sbjct: 76  MTYIQSTATNSGSAMITVYFKQGSDPNMASVNV-----QNRVSQAQALLPAEVTRAGVTV 130

Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
                + ++   +    G            ++++  +     +       +  Y     +
Sbjct: 131 SKRQTSNVVMYSLTTDDGRYDDEFLTNYNNINVVPLLKRINGVGDVQTPGMKTYSMRIWL 190

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
               + ++ LIP  IA             S                      K    + +
Sbjct: 191 KPEKMKQYGLIPSDIAGALAEQNIEAAPGSFGEQSNMKYEYTMRYKGRLKTQKEYEDIII 250

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             N       +R   +    G +   +    K   V    Q       T++ + VK  + 
Sbjct: 251 SNNVNGQTLHLRDVADVKLGGLMYSVSMLNNKQPSVVGMVQQIAGSNATQIAKDVKAALE 310

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
           ++           +   ++  L       I  + I+ + +   ++I        L  +  
Sbjct: 311 DVQKNMPPGMKVTIQQDVTEFLFASMEEVIFTLFITLLLVFFVVYIFLQDLRSTLIPMIA 370

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  +  F  +FG   NL  ++A+L  I   V+D +VV + +   + L     S   
Sbjct: 371 VPVALIGSFFFLWMFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLDLGYK--SALT 428

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
               ++NE  G  +  ++      +P++   G+       F + MA  IV++A +++ ++
Sbjct: 429 AAIDAMNEISGAIISITLVMSAVFIPVSFMSGTSGTFYREFGVTMAVSIVISALNALTLS 488

Query: 817 API-LLFIYDWRAKNAR 832
             +  + +     +  +
Sbjct: 489 PALCAILLKPHSEEEKK 505


>gi|149277376|ref|ZP_01883517.1| multidrug efflux membrane fusion protein [Pedobacter sp. BAL39]
 gi|149231609|gb|EDM36987.1| multidrug efflux membrane fusion protein [Pedobacter sp. BAL39]
          Length = 1034

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 78/650 (12%), Positives = 181/650 (27%), Gaps = 39/650 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  MI   G++           +  FP+  P                     
Sbjct: 9   KRPVLAIVMNLMILLFGVI-----GYNFLGVREFPNIDPTVV---------SVRTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + +        S  Q  + IT+ F   +  ++ A+ V   +  
Sbjct: 55  NSDIIESQITEPLEKSINGIDGIRNISSSSNQGSSNITIEFNLDKNIDDAANDVRDKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D   N +V+  +     V++   I     + +E S        D++       
Sbjct: 115 AARSLPKDIDGNPVVSKADANSDAVIT-MTIQSDKRNVMELSDFAENVIADRLQTITGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    +P +L     T+  +                        D    
Sbjct: 174 SIQIQGQRKYAMRIRIEPDKLSAYGLTSQDILTAL--------------------DRENV 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                           D+                             
Sbjct: 214 ELPSGKITGANTELIVKTLGKLTDESEFNDLILKSDSGNVVRLKDVGFAELGSENEETVL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +   +       +   +     +      A L+          +          S + 
Sbjct: 274 RESGKPMVAVGLVPQPGANYLDISKEFDKRFAQLQKDVPEDIKLAISIDTTKFIKLSVTE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV+I++++        +     I +++I T  ++ + G ++ + S+  IV
Sbjct: 334 VAETIILSLILVIIIIYLFFRDWAIAIRPLIDIPVSLIFTFFIMYIFGFSINVLSLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478
           L  GL VD  I+V E I ++  +  S F +   G +    A  +I  +     +  + L 
Sbjct: 394 LATGLVVDDGIVVTENIFKKVEEGYSPFEAAIKGSNEIFFAVISISITLAAVFLPVIFLE 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
            F G   R F I +G ++LIS F ++++   +  ++++    K      L+  + +    
Sbjct: 454 GFVGRLFREFGIVIGAAVLISAFVSLTLTPMLNAYLMKKTGHKKSKFYNLTEPYFVKLND 513

Query: 539 AIQFMRARFW-GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +      RF     +SI   +  + L+         +         +             
Sbjct: 514 SYSDKLNRFLDKKWLSIPIILICLGLIVLFWKIIPKETAPYDDRSAVNMNVTTPEGASFA 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                + ++     D      V +          +     V+  +T+   
Sbjct: 574 YTDRFMMNLQQMVTDSIPEKKVNITITSPGFGGGSTNSGFVRMALTDPGD 623



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 60/151 (39%), Gaps = 7/151 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W  A+  +  + + +  T     +FG   N+ ++ A++   G  V+D +VV + + 
Sbjct: 352 FFRDWAIAIRPLIDIPVSLIFTFFIMYIFGFSINVLSLLAIVLATGLVVDDGIVVTENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
              K      S  +   K  NE     +    T  A F+ V+ +  + G +   F I + 
Sbjct: 411 --FKKVEEGYSPFEAAIKGSNEIFFAVISISITLAAVFLPVIFLEGFVGRLFREFGIVIG 468

Query: 803 FGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
             ++++A  S+ +   +    +     K ++
Sbjct: 469 AAVLISAFVSLTLTPMLNAYLMKKTGHKKSK 499



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 57/148 (38%), Gaps = 6/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   +  I T+ + +        LFG  +N+ +    + LIG    + +++ +      
Sbjct: 876  SFVDPVIIILTVPMAVAGAFLSLWLFGQSWNIFSQIGTIMLIGLVTKNGILIVEFAN--- 932

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
            +L     +  D I ++    L   + TS+A  I  LP+A+  G+         I +  G 
Sbjct: 933  QLKEQGATVHDAIREAAVSRLRPILMTSLAIAIGALPIAMALGAAAKSRMGMGIVIVGGT 992

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            + +   ++F+   I  +       N  +
Sbjct: 993  MFSLVLTLFVIPAIYSYWSKEHKANTEL 1020


>gi|160897701|ref|YP_001563283.1| acriflavin resistance protein [Delftia acidovorans SPH-1]
 gi|160363285|gb|ABX34898.1| acriflavin resistance protein [Delftia acidovorans SPH-1]
          Length = 1053

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/541 (14%), Positives = 156/541 (28%), Gaps = 33/541 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +M+  IGL +A         +   P                     L     D +   
Sbjct: 16  IATMLMTIGLALAGAVSYFLLPVAPLPQVDYPTI---------SVSASLPGASPDTMAAT 66

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +     +        S      +ITL F  SR  ++ A  V   +    + L   
Sbjct: 67  VATPLERALGAIAGVNEITSSSSLGSTRITLQFDLSRTVDSAARDVQAAINAARTLLPSG 126

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
              N          + ++    +        +           ++   E   Q   S   
Sbjct: 127 MPGNPTYRKVNPADAPIMI-LALTSSALTRGQMYDAASTVLAQKLSQVEGVGQASISGGA 185

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           L  +  E DP +L     +  ++       N ++                          
Sbjct: 186 LPAVRVELDPVKLAANGVSLDQVRTAISATNANRPLGAVERE------------------ 227

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
              H    TAN   +       +                ++   +  V +  V       
Sbjct: 228 --DHYWQVTANDQARVAADYAPLVLRWSNGNAIRLQDVADVTDSVQDVRNYGVANGKPAI 285

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 +   +    ++    L   L+A         +          S    +    I 
Sbjct: 286 LLQIFKQPDANILEAVQRVRALLPQLKASIPEAIDLTIVSDRTPTLRASVVEVERALVIA 345

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV++V+F+ +  G+  L+   ++ +++  T  ++ L G TL   S+  + +  G  VD
Sbjct: 346 VALVILVVFLFLRNGRATLIPAVAVPVSLAGTFGVMYLAGYTLDNLSLMALTVATGFVVD 405

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVR 486
             I+V E +     + ++   +   G      T+   +++ +   V + F G   G   R
Sbjct: 406 DAIVVLENVMRHMERGKTALRAALDGAREIGFTVVSMSLSLIAVFVPILFMGGIVGRFFR 465

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            FA+ M  +ILISM  +++    M   ++R  ++ +                A      R
Sbjct: 466 EFAVVMSAAILISMVVSLTTTPMMCAALLRSHRLPAKQRPRRRLGRAWDRFAAWMGRVER 525

Query: 547 F 547
            
Sbjct: 526 R 526



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 81/250 (32%), Gaps = 10/250 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +   ++   +                   + LQ            ++ V+  + ++    
Sbjct: 256 NAIRLQDVADVTDSVQDVRNYGVANGKPAILLQIFKQPDANILEAVQRVRALLPQLKASI 315

Query: 650 TIQNTEIVGPKISRELIRKGI---VGVIISAIAMLIYIWIRFKW-YFALGAITTLILDIT 705
                  +    +  L    +     ++I+   +++ +++  +     L     + + + 
Sbjct: 316 PEAIDLTIVSDRTPTLRASVVEVERALVIAVALVILVVFLFLRNGRATLIPAVAVPVSLA 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G   L G   +  ++ A+    G+ V+D +VV + +   M+      +         
Sbjct: 376 GTFGVMYLAGYTLDNLSLMALTVATGFVVDDAIVVLENV---MRHMERGKTALRAALDGA 432

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     V  S++     +P+   GG V      FA+ M+  I+++   S+     +   
Sbjct: 433 REIGFTVVSMSLSLIAVFVPILFMGGIVGRFFREFAVVMSAAILISMVVSLTTTPMMCAA 492

Query: 823 IYDWRAKNAR 832
           +       A+
Sbjct: 493 LLRSHRLPAK 502



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 95/249 (38%), Gaps = 6/249 (2%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                  + V  ++   +   +               + +   + VA +   + ++  + E
Sbjct: 784  FVNNQGVQVPLTSFARITTTNTPLAVNHDRGTPASTISFSLAEGVALSDASDAIRAAVAE 843

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
            +    +++ +        ++ +    + ++ + I + + + + ++     L  ++TL   
Sbjct: 844  LGVPVSVRGSFSGTAGAFQQALSGQPLLILAAIITIYLVLGVLYESLVHPLTILSTLPSA 903

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L    LF  EF+L A+  V+ LIG    + +++ D   +  +      +    I +
Sbjct: 904  GVGALMALMLFKTEFSLIALIGVILLIGIVKKNAIMMIDFALERQRAG--HATAAQAIYR 961

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + TS+AA    LP+A+    G  +     I +  G++++   +++    + 
Sbjct: 962  ACELRLRPILMTSLAAICGALPLALGRGDGAELRQPLGIAIVGGLMLSQLLTLYTTPVVY 1021

Query: 821  LFIYDWRAK 829
            + +   R +
Sbjct: 1022 VLLDRLRQR 1030


>gi|146302142|ref|YP_001196733.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Flavobacterium johnsoniae UW101]
 gi|146156560|gb|ABQ07414.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Flavobacterium johnsoniae UW101]
          Length = 1068

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/640 (11%), Positives = 179/640 (27%), Gaps = 39/640 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG-FLQMYSDELRSFLKK-EGI 86
           Q  + +FP   P             + + + +          ++     L + L   +G+
Sbjct: 29  QLPISQFPQIAP-------------TTVNIFIAYPGASADVLVKSTLITLENSLNGTQGV 75

Query: 87  GVFSM---RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
              +       +  + + F           +V   +  V   L    ++  +V T  +  
Sbjct: 76  RYMATDATSAGEATLRIIFEPGTDPNEAVIRVKTRVDQVMPLLPELVQREGVVITPIQPS 135

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            ++                      + I +I   +   +          +    +P R+R
Sbjct: 136 MLMYVNLYSKSKSMDEKFLYNYADVKMIPEISRVKGVARTQILGSRKYAMRVWLNPDRMR 195

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
               +  ++       +   +    G      +   +Y++  K                 
Sbjct: 196 AYKISVEEVMQALQEQSIIGRPGRLGQSSGIAAQSLEYVLTYKGR-------------YD 242

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
           +  +    I                 +            L        +       + + 
Sbjct: 243 EPKEYENVIVRANSEGESIRLKDIAKVELGSEFFDIYSNLDGHPSAAIVLKQNYGSNASD 302

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            I         ++A   P     +          S      T      LV +V+F+ +  
Sbjct: 303 VINDVKAKLEEMKASFPPGMDYKISYDVSQFLDASIDQVVHTLRDAFILVALVVFVFLGD 362

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE--RIREE 441
            +  L+   ++ +++I    ++ + G ++ L ++  +VL IG+ VD+ I+V E    + E
Sbjct: 363 WRSTLIPIIAVPVSLIGAFFVIQIFGMSINLVTLFSLVLAIGIVVDNAIVVVEAVHAKFE 422

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILI 498
              + + + ++ +        I       +   + + F  G      R F++TM  SI+I
Sbjct: 423 EFPHITPYHAVKLVLGEIGGAIIAITAVMVSVFIPVSFMSGPVGTFYRQFSVTMSSSIII 482

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           S   A+++   +   +++    K       +      D     F R     V +      
Sbjct: 483 SAIVALTLTPVLCAILLKNNHGKE---KKGNILTKSLDAFNRWFERLTSRYVIVLKAIVS 539

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             +             F     L        D   +   +++     +   N   +K   
Sbjct: 540 RRVLTFGILIAFCAFIFIENRVLPSGFIPNEDQGTIYGIIQTPPGATLERTNQVAQKLQK 599

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           +  + +  +SV+     E++ +          I       
Sbjct: 600 ICEKVEGVESVSSLAGYEIMTEGRGSNAGTCLINLKSWSE 639



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 102/284 (35%), Gaps = 9/284 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                            + K    + V AN   +   ++   +     +      + + +
Sbjct: 226 IAAQSLEYVLTYKGRYDEPKEYENVIVRANSEGESIRLKDIAKVELGSEFFDIYSNLDGH 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGV 673
               +  +       + V+  VK K+ E+           +   +S+ L   I + +  +
Sbjct: 286 PSAAIVLKQNYGSNASDVINDVKAKLEEMKASFPPGMDYKISYDVSQFLDASIDQVVHTL 345

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + I + + +++    W   L  I  + + +        +FG+  NL  + +++  IG 
Sbjct: 346 RDAFILVALVVFVFLGDWRSTLIPIIAVPVSLIGAFFVIQIFGMSINLVTLFSLVLAIGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V++ +VV + +    + +   I+    +   + E  G  +  +       +P++   G 
Sbjct: 406 VVDNAIVVVEAVHAKFEEFPH-ITPYHAVKLVLGEIGGAIIAITAVMVSVFIPVSFMSGP 464

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
           V      F++ M+  I+++A  ++ +   +  + + +   K  +
Sbjct: 465 VGTFYRQFSVTMSSSIIISAIVALTLTPVLCAILLKNNHGKEKK 508



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/325 (9%), Positives = 85/325 (26%), Gaps = 6/325 (1%)

Query: 510  MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
            +  F         ++IN                      G      F             
Sbjct: 715  LFTFFAANYPQYELEINNDLAMQKGVSIGKAMENLNILIGSTYEQGFIKFGRFFKVYVQS 774

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            +          L +         V  S   +L+      +           +Q QP    
Sbjct: 775  DPKFRRLPSDILNLFVKNDHGKMVPYSAFMTLKKTQGPNEITRYNMYNSAAIQGQPAKGY 834

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                 ++ V++   + +P       E +    +        + +++ A    +       
Sbjct: 835  TTADAIKAVQETALKTLPKGYDIAWEGLSYDEAGRGNESLYIFLMVLAFVYFVLAAQYES 894

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            +   L  I ++ + I  +     + G++ ++ A   ++ L+G    + V++ +     + 
Sbjct: 895  FIIPLSVILSIPVGILGSFVILQIMGLQNDIYAQIGLIMLVGLLGKNAVLIVEFA---VL 951

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIV 806
             +    +  +   +         + TS A    ++P+    G   I   +       G++
Sbjct: 952  KHQQGATILEAAIEGAKVRFRPILMTSFAFIAGLIPLIFASGAGAIGNRTIGGSALGGML 1011

Query: 807  VAASSSIFIAAPILLFIYDWRAKNA 831
                  + I   +            
Sbjct: 1012 FGTLFGVIIVPGLYYIFGSLAQGRK 1036


>gi|325953866|ref|YP_004237526.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family [Weeksella
           virosa DSM 16922]
 gi|323436484|gb|ADX66948.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Weeksella virosa DSM 16922]
          Length = 1055

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/664 (11%), Positives = 172/664 (25%), Gaps = 52/664 (7%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF-LQMYSDELRSFLKKEG--- 85
             + ++P   P               + +            ++     L   +       
Sbjct: 30  LPVTQYPDIAPPT-------------VQVNASYTGANAQTVMESVIIPLEEQINGVEDMD 76

Query: 86  -IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            I   S      +I + F      +     V   +      L  +  ++ + T  ++  +
Sbjct: 77  YITSTSSNSGTAQINVVFKAGVDPDIATVNVQNRVARATPLLPAEVTRSGVTTQKQQTSA 136

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++      D      I     +    I +I               +  +    DP++L  
Sbjct: 137 LMFLSFYSDNPDYDQIYIQNYMNINVIPEIKRINGVGDATAFGSKVYSMRIWLDPNKLAN 196

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
                + +       +        G     D    QY++  K +++              
Sbjct: 197 YQLVPSDVIAAINEQSLEAAAGQLG---QNDGKSFQYIITYKGKLNQEE----------- 242

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 I                             +    
Sbjct: 243 --QYENIVIKTLPNGSVLRLKDIAKIELGSLDYGGVSETNGKPNVAMAIYQTPGSNAQKI 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           I    I    ++    P     +          S +    T      LV IV+++ +   
Sbjct: 301 INDIKIELEKIQQNLPPGVHYFINFDTNEFLEASINKVVSTLIEAFILVFIVVYIFLQDW 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR-EENR 443
           +  L+   ++ +++I T   L+L G +L L ++  +VL IG+ VD  I+V E +  +   
Sbjct: 361 RSTLIPLIAVPVSIIGTFFFLNLFGYSLNLLTLFALVLAIGIVVDDAIVVVEAVHAKMEE 420

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISM 500
            +     + +   S     I    +      V + F  G      + F +T+ ++I+IS 
Sbjct: 421 THMEARPATESAMSEITGAIISITLVMAAVFVPVTFITGPTGVFYQQFGVTLIVAIIISA 480

Query: 501 FTAISIVRAMMIFI--------------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
             A+++  AM                  I  K  +  +           +     F    
Sbjct: 481 VNALTLSPAMCALFLKPHNEEDEKTKKSIIRKGFQKFNEGFDKMTRRYTNSFKFLFKHKW 540

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              + +    +I  I   +        + +G I              V       +    
Sbjct: 541 VTFLILLASLAIIFITNKYMPTGFVPNEDRGFIMGNFELPAGASADRVYELQRQFREKAK 600

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +  +               S     ++++   K  +    +     + +    ++   
Sbjct: 601 EIKGINTITMVSGFSLISGQGSNYGIALIKLDDFKDRKTQETNIDNIIKQLFITGAQFPD 660

Query: 667 RKGI 670
            K I
Sbjct: 661 VKAI 664



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 103/279 (36%), Gaps = 7/279 (2%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
               + +   LN    ++  +   +     + L  +              +        +
Sbjct: 228 FQYIITYKGKLNQEEQYENIVIKTLPNGSVLRLKDIAKIELGSLDYGGVSETNGKPNVAM 287

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              Q    ++      +++  +KI + +P            +     I K +  +I + I
Sbjct: 288 AIYQTPGSNAQKIINDIKIELEKIQQNLPPGVHYFINFDTNEFLEASINKVVSTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I    W   L  +  + + I  T  F  LFG   NL  + A++  IG  V+D 
Sbjct: 348 LVFIVVYIFLQDWRSTLIPLIAVPVSIIGTFFFLNLFGYSLNLLTLFALVLAIGIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    K+  T +  R   + +++E  G  +  ++      +P+    G      
Sbjct: 408 IVVVEAVH--AKMEETHMEARPATESAMSEITGAIISITLVMAAVFVPVTFITGPTGVFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
             F + +   I+++A +++ ++  +  LF+     ++ +
Sbjct: 466 QQFGVTLIVAIIISAVNALTLSPAMCALFLKPHNEEDEK 504



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 62/173 (35%), Gaps = 9/173 (5%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
             E+   G   +I     + +Y  +      +      + +L + +        L G+E N
Sbjct: 865  EEINSGGQTILIFMLCVVFVYFILSAQYESYILPFAVLLSLPVGVMGAYLSQFLAGLENN 924

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            +    A++ L+G    + +++ +      +     +S      +     L   + TS A 
Sbjct: 925  IYFQIALVMLVGLLAKNAILIVEFA---AQRRRYGMSIWQAAMEGAKSRLRPILMTSFAF 981

Query: 780  FISVLPMAV-WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             + + P+ +  G   I   S     AFG+++     +F+   + +     + K
Sbjct: 982  ILGLTPLVISSGVGAIGNRSIGTGAAFGLLIGTILGVFVIPVLFVIFQSIQEK 1034


>gi|295676209|ref|YP_003604733.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
 gi|295436052|gb|ADG15222.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
          Length = 1110

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/551 (11%), Positives = 144/551 (26%), Gaps = 38/551 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+         +  +   P                     L    
Sbjct: 10  RPVATTLLAIGIALSGVFA-----FTKLPVAPLPQVDFPTI---------SVQATLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +IT+ F  +R     A  V   +   
Sbjct: 56  PETVATSVASPLERHLGSIADVTEMTSQSSVGSTRITMQFGLNRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N          + +L    +        +            +   +   +
Sbjct: 116 RADLPASLRSNPTYHKVNPADAPILI-LALTSSTRTPGQLYDSAATVLQQSLSQVQGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E  P  L         +       N +                    
Sbjct: 175 VDVSGSANPAVRVELLPHALSHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G +      N          D+                 +   +  + +  +
Sbjct: 217 --KGAIEFGENRVQLYTNDQATKASQYKDLVIAYRNGAPVKLSDMGEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   T++    +   L A                    S    
Sbjct: 275 FNGKHAVLVILYRQPGANIIETVDRVKAMLPQLHASLPADVEISPTSDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + L+G +L   S+  + +
Sbjct: 335 QRTLVIAVALVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLMGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +  +G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIEDGVPRMKAAFLGAREVGFTVMSISISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R    K  +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLVVSLTLTPMMCSRLLREPHEKKQESRFGRWLERGFASMQ 514

Query: 540 IQFMRARFWGV 550
             + R   W +
Sbjct: 515 RGYERTLGWAL 525



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 94/268 (35%), Gaps = 7/268 (2%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +    +   L+T+           + +      PV LS +   ++S++           
Sbjct: 219 AIEFGENRVQLYTNDQATKASQYKDLVIAYRNGAPVKLSDMGEVVDSVEDLRNLGLFNGK 278

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               ++  +    + +     ++ +  ++   +P     +         R  ++     +
Sbjct: 279 HAVLVILYRQPGANIIETVDRVKAMLPQLHASLPADVEISPTSDRSTTIRASLKDTQRTL 338

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I+   +++ +++  + W   L     + + I  T G   L G   +  ++ A+    G+
Sbjct: 339 VIAVALVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLMGFSLDNLSLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +     +           E     +  S++     LP+ + GG 
Sbjct: 399 VVDDAIVVLENI---SRHIEDGVPRMKAAFLGAREVGFTVMSISISLVAVFLPILLMGGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+   S+ +  
Sbjct: 456 VGRLFREFALTLSLAIAVSLVVSLTLTP 483



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 96/238 (40%), Gaps = 7/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S   G          +     + +     V+ +   +++   + EI   +TI  + 
Sbjct: 859  SAIASFGPGTTPLSVNHQSQFVASTISFNLPPGVSLSTATQVIYDTMAEIGMPATIHGSF 918

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++ +    + ++ +  A+ I + I ++ +   L  ++TL       L    LF
Sbjct: 919  QGTAQAFQQSMSDQPILILAALAAVYIVLGILYESYIHPLTILSTLPSAGVGALLALLLF 978

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              EF++ A+  V+ LIG    + +++ D     +      +S RD I ++        + 
Sbjct: 979  NTEFSIIALIGVILLIGIVKKNAIMMVDFA---IDASRKGLSSRDAIYQACLLRFRPIMM 1035

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+ AA +  LP+A     G  +     I +  G++V+   +++    + L++   R +
Sbjct: 1036 TTFAAMLGALPLAFGSGEGAEMRAPLGISIVGGLIVSQMLTLYTTPVVYLYMDRIRVR 1093


>gi|77165300|ref|YP_343825.1| hydrophobe/amphiphile efflux-1 HAE1 [Nitrosococcus oceani ATCC
           19707]
 gi|254434671|ref|ZP_05048179.1| RND transporter, HAE1 family [Nitrosococcus oceani AFC27]
 gi|76883614|gb|ABA58295.1| Hydrophobe/amphiphile efflux-1 HAE1 [Nitrosococcus oceani ATCC
           19707]
 gi|207091004|gb|EDZ68275.1| RND transporter, HAE1 family [Nitrosococcus oceani AFC27]
          Length = 1071

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/529 (12%), Positives = 141/529 (26%), Gaps = 34/529 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKK-EGI 86
              ++R P   P               +V+           +       L   +   E +
Sbjct: 31  TLPIERHPQIAPPT-------------VVVSTTYPGASGETVAKTVATPLEQEINGVEDM 77

Query: 87  GVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
              S +   +   ++T++F      +     V   +     +L  + ++  +        
Sbjct: 78  LYMSSQATNDGALRLTITFELGTDLDKAQVLVQNRVALAEPRLPEEVRRMGISVRKSSPD 137

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
             ++            I  S   +    + +                  +    DP  L 
Sbjct: 138 LSLVVNIISPDQRYDQIYLSNYALIHVREALARLPGVGDIALFGGRDYSMRVWLDPESLA 197

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
               T   +       N        G   +  S   Q  V     ++             
Sbjct: 198 SRELTAMDVVRAIREQNVQVAAGTLGEPPIPGSTDLQLTVNTMGRLTEAE---------- 247

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +    I       +  +      I    A       L +      I   +   +   
Sbjct: 248 ---QFGKIIVKTGTEGQVTYVRDIARIELGAASYASNLYLGSQPTVGIIIFQRPGSNALE 304

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T +        L     P     V          S             +VL+V+ + +  
Sbjct: 305 TKQAVMETMERLAKDFPPGIAYRVVYDTTTFIEESVKSVVKVLFEAVLIVLVVVLVFLQN 364

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  L+   ++ +++I T A+L+ LG +L   ++A +VL IG+ VD  I+V E +     
Sbjct: 365 WRATLIPMLAVPVSLIGTFAVLAALGFSLNTLTLAAMVLAIGIVVDDAIVVVENVERNLE 424

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISM 500
                  +           I    +      +   F     G   + FA+T+  + +IS 
Sbjct: 425 AGLPRREATLKAMGEVSGAIIAMALVLGAVFIPTAFISGVTGQFYQQFALTIAAATIISA 484

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
             ++++  A+    ++    K   +                ++   FW 
Sbjct: 485 INSLTLSPALSAIFLKSPDEKKDFLQRWLDRLFGWFFKGFNWVFGWFWT 533



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/211 (9%), Positives = 62/211 (29%), Gaps = 6/211 (2%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                   +     + + I E                         +    +  + + + +
Sbjct: 837  DAMPGISSGQAISLMEAIAERELPRGFGFEWTELTYQQILAGNTAVYIFPLCVLFVFLVL 896

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
              +++ W   L  I  + + +   +      G++ N+      + LIG +  + +++ + 
Sbjct: 897  AAQYESWSLPLAVILIVPMCLLSAIMGIWFMGMDNNIFTQIGFIVLIGLASKNAILIVEF 956

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
             +         ++      +S    L   + TS A    VLP+ +    G        + 
Sbjct: 957  AK--QLQDKQGLNRYKAAVESSRLRLRPILMTSFAFVFGVLPLVIAEGAGAESRELLGVA 1014

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  G++      +       + +  +  +  
Sbjct: 1015 VLSGMLGVTFFGLVFTPIFYVVVRTFVERRQ 1045


>gi|288962522|ref|YP_003452817.1| RND superfamily, multidrug transport protein [Azospirillum sp.
           B510]
 gi|288914788|dbj|BAI76273.1| RND superfamily, multidrug transport protein [Azospirillum sp.
           B510]
          Length = 1051

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 148/492 (30%), Gaps = 35/492 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+                    L     + +   +    +     +     
Sbjct: 29  YSALPISSLPTVDFPTVR---------VTTQLPGAAPEVMASSVTAPLERQLGQIAGISS 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI-SI 145
            + +     + ITL F  SR  +  +  V   +   +  L        +          +
Sbjct: 80  MISTSSFGLSVITLQFDLSRDIDAASQDVQSAISAASGTLPKGLPNPPVYDKVNPADTPV 139

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++   + + +    +  + + +     ++   +          +   +  + +P+ +  L
Sbjct: 140 MVLALSSESLRLETVSDAADTL--LAQKLSQVDGVGYVGIEGGLRPAVRVQVNPAAVAGL 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T   +       N +     F       S G    +E+                    
Sbjct: 198 GLTLEDVRSTITQANVNAPKGSFDGPRQSWSIGVNDQIENAA------------------ 239

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                 +                 +   +                     +   +   T+
Sbjct: 240 --AYRPVIVAYRNGGPVRLSDIGTVVDSVENTRLAAWHDGKPAVLLNVLRQPGANIIDTV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +    L   L+A   P     V          S    + T  + AGLV++V+F+ +    
Sbjct: 298 DRIRKLLPALQASLPPQIHMAVLTDRTETIRASVVDVQKTLVLTAGLVVLVIFLFLRKAW 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             ++   ++ L++I T  +++L G +L   S+  + +  G  VD  I++ E I     + 
Sbjct: 358 ATVIPAAALPLSLIGTFGIMALCGFSLDNLSLMALTIASGFVVDDAIVMIENIVRHIEEG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
           ++   +   G S+   T+    ++ +   + L F G   G   R FAIT+ +++L+S   
Sbjct: 418 ETPLQAALKGASQIGFTVVSLTLSLIAVFIPLLFMGGVVGRLFREFAITLSIAVLVSAVI 477

Query: 503 AISIVRAMMIFI 514
           ++++   M   +
Sbjct: 478 SLTLTPMMCARL 489



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 96/261 (36%), Gaps = 12/261 (4%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           ++ G+N  I+     +  ++A R      +      +   + +      +    V L   
Sbjct: 227 WSIGVNDQIENAAAYRPVIVAYRNGGPVRLSDIGTVVDSVENTRLAAWHDGKPAVLLNVL 286

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIA 679
                     ++ ++K +  +      Q    V    +  +    +     + +    + 
Sbjct: 287 RQPGANIIDTVDRIRKLLPALQASLPPQIHMAVLTDRTETIRASVVDVQKTLVLTAGLVV 346

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ++I++++R  W   +     L L +  T G  AL G   +  ++ A+    G+ V+D +V
Sbjct: 347 LVIFLFLRKAW-ATVIPAAALPLSLIGTFGIMALCGFSLDNLSLMALTIASGFVVDDAIV 405

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           + + +   ++      +      K  ++     V  +++     +P+   GG V      
Sbjct: 406 MIENI---VRHIEEGETPLQAALKGASQIGFTVVSLTLSLIAVFIPLLFMGGVVGRLFRE 462

Query: 797 FAIPMAFGIVVAASSSIFIAA 817
           FAI ++  ++V+A  S+ +  
Sbjct: 463 FAITLSIAVLVSAVISLTLTP 483


>gi|238919098|ref|YP_002932612.1| multidrug efflux system subunit MdtC [Edwardsiella ictaluri 93-146]
 gi|238868666|gb|ACR68377.1| multidrug resistance protein MdtC [Edwardsiella ictaluri 93-146]
          Length = 1026

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/626 (12%), Positives = 172/626 (27%), Gaps = 39/626 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + + +  + + +     L    +   P       +             L     + +   
Sbjct: 12  VATSLLALAITLVGLLGLRLLPVAPLPQVDFPVIM---------VSASLPGASAETMAAS 62

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           + M  +     +        S      +I L F   R  +  A  V   L    S L   
Sbjct: 63  VAMPLERALGRIAGVNEMTSSSSLGTTRIILQFNLDRNIDGAARDVQAALNAAQSLLPSG 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                         + +     +        +       +   +I           S   
Sbjct: 123 MPSRPSYRKANPSDAPIAI-LTLTSAQYSQGDLYDLASTRLAQKIAQINGVGDVSVSGSS 181

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           L  +  + +P  L     +   +       N  +          R    +   +      
Sbjct: 182 LPAVRIDLNPDALFNQGTSLDTVRQAIASANVRRPLGAVADDGRRWQVQSNDALMTA--- 238

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                            +    +                 I   +  V +  +       
Sbjct: 239 -----------------QEYRPLIIRYRDGAPLRLQDVARISDGVEDVRNAGMSNGQPAI 281

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +    A  +   T++        L+A         + +        S    + + AI 
Sbjct: 282 LIMIRRSADANIIETVDRLRSDLPALQALLPGGVSLDIAQDRTPTIRASLREVEQSLAIA 341

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV++V+F+ +   +  L+   ++ +++I T A + L G +L   S+  + +  G  VD
Sbjct: 342 IALVILVVFLFLRSARATLIPAVTVPVSLIGTCAAIYLCGFSLNNLSLMALTIASGFVVD 401

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VR 486
             I+V E I        S   +   G      T+F  +++     + L F GG       
Sbjct: 402 DAIVVLENIARHIEDGLSPHRAALAGVREVGFTVFSISLSLAAVFIPLLFMGGIPGRLFH 461

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRFFLIPDCIAI 540
            FAIT+  SI IS+  A+++   M   ++R +         ++              +  
Sbjct: 462 EFAITLSASIAISLLIALTLTPMMCARLLRPRHTDGGMRPTALRRLSALLQRGYALSLNW 521

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
               AR+  + +  +  +     +      +     G +   + A++ +    +R  L+ 
Sbjct: 522 TLDHARWVLLTLLAVIGLNIWLYISIPKTFFPQQDTGRLMGFIQADQSISFQAMRGKLQD 581

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPG 626
                 +  + D    F    +   G
Sbjct: 582 FMHIVRADPDVDNVTGFTGGTRVNSG 607



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 60/150 (40%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + +++++++R      L    T+ + +  T     L G   N  ++ A+    
Sbjct: 338 LAIAIALVILVVFLFLR-SARATLIPAVTVPVSLIGTCAAIYLCGFSLNNLSLMALTIAS 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +     +S        + E        S++     +P+   G
Sbjct: 397 GFVVDDAIVVLENI---ARHIEDGLSPHRAALAGVREVGFTVFSISLSLAAVFIPLLFMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G        FAI ++  I ++   ++ +  
Sbjct: 454 GIPGRLFHEFAITLSASIAISLLIALTLTP 483



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 89/217 (41%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   + +   +T +    +++ T      + ++     ++ ++ +   
Sbjct: 803  TISFNLPPGGSLSDASDAIAHAMTALGTPPSLRGTFAGTALLFQQAQSSQLLLILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYIHPLTILSTLPSAGVGALLALMLFNAPFSLIALIGIMLLIGLVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D            +S RD I ++        + T++AA    LP+A     G  +  
Sbjct: 923  LLVD--FALTAEREQHLSARDAIYQACLLRFRPILMTTLAALFGALPLAFSYGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G++V+   +++    + L++   RA+ +R
Sbjct: 981  PLGITIVGGLLVSQILTLYTTPVVYLYMEKLRARFSR 1017


>gi|24374990|ref|NP_719033.1| AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
 gi|24349719|gb|AAN56477.1|AE015784_10 AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
          Length = 1046

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/580 (9%), Positives = 159/580 (27%), Gaps = 38/580 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  GL+        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGLVS-----FTKLSVREMPDVESPVVT---------VSTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SAAIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPEDANDPVVSKDNGSGEPSVYVNLSSS--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   ++      N    G                
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 217 ---GQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNLSLGVITQSDANPLVVAQEVHKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++ G ++ L ++  ++
Sbjct: 334 VYNTLYVTGALVVLVLYIFIGQVRATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVVENIFHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S+L S   A+++   +   +++     +     + R F   + +
Sbjct: 454 GMVGLLFTEFSVMLAVSVLFSSLIALTLTPVLSSKLLKANVKPNRFNRFVDRGFARMEKL 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
               +        ++ L  +  I                 
Sbjct: 514 YHVGVTHAIRFRLLAPLVILACIGGSVWLMQQVPAQLAPQ 553



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 90/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IV 671
             + L            V + V K++ +I        + +V    +  + R        +
Sbjct: 279 VNLSLGVITQSDANPLVVAQEVHKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        +FG   NL  + A++  IG
Sbjct: 339 YVTGALVVLVLYIFI-GQVRATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVLFSSLIALTLTPVLSSKLLKANVKPNR 498



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 12/134 (8%)

Query: 699  TLILDITKTLGFFA-LFGIEFNLTAV-----AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L++  T  +G F    G+      +       ++ LIG    + +++ +      +L  
Sbjct: 878  PLVVMFTVPMGVFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFAN---QLRD 934

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              ++    I  +    L   + T+    +  +P+      G     +    + FG+  A 
Sbjct: 935  RGLALDKAIIDASTRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFAT 994

Query: 810  SSSIFIAAPILLFI 823
              ++F+   +   I
Sbjct: 995  FVTLFVIPAMYRLI 1008


>gi|311279334|ref|YP_003941565.1| acriflavin resistance protein [Enterobacter cloacae SCF1]
 gi|308748529|gb|ADO48281.1| acriflavin resistance protein [Enterobacter cloacae SCF1]
          Length = 1026

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 82/672 (12%), Positives = 200/672 (29%), Gaps = 51/672 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--L 58
           ++    +++L+  +   GL+        +  +   P+                  +   L
Sbjct: 8   LKKPIAVMLLWLAVVVAGLI-----CWFKLPIAALPNYDTPT-----------IQVTASL 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                + +   +    ++  S +        +  Q +  I L F  SR  ++    V   
Sbjct: 52  SGASPETMASSVATPLEKKLSTIPGVANMTSNSLQGETTIVLEFDPSRNIDSATVDVQSA 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L     +L  +              + ++ Q  +D       + +          +    
Sbjct: 112 LYQALKQLPKEMTTPPTFRKINPADAPIV-QIGLDSPSMTLSDLNRYSDDLIAPALSTLN 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q     +    +  E +P +L     T   ++      N +        +       
Sbjct: 171 GVAQVTVIGQKRYAVRIEINPDKLAATGLTLEDVNAAVSAANANSPIGELDGKRQMVMLQ 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            +  + +  + + + +                         +        ++   +   L
Sbjct: 231 TRGDLMNAADFANVVIAT--------------------RNDQPVRLSDVASVEDSIENTL 270

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +            +   +   TI+    +   L+A         +      +   +
Sbjct: 271 SFSAVNGHNAIVLSVQRQPGANIVSTIDAIRQILPKLQAQMPASVNVKLLNDRSTSIRNA 330

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T  +  GLV++V+ + + + +   +   S+ ++++   AL+   G +L   S+ 
Sbjct: 331 IHDVTVTLMLTIGLVIMVILLFLRHARATFIPALSLPVSLLGAFALMYAFGLSLDNISLM 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+ + +GL VD  I+V E I     + +  F +   G      T+   +++ +   + +F
Sbjct: 391 GLTIAVGLVVDDAIVVLENIMRYIEQGEKPFQAALKGVREVAFTVMSISLSLIAVFIPIF 450

Query: 479 FFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF--- 532
           F  G        FA  + L+IL+S   +++I+  ++  +I+   +        S  F   
Sbjct: 451 FMPGTIGLLFHEFAWVVSLAILVSAAASLTIIPLLVPKLIKPHHISDKPEPRWSIAFEKG 510

Query: 533 ---LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L            R  GV +S+  +   +          G   +  I      N  +
Sbjct: 511 FDGLRQHYANGLEWAIRHRGVTLSVALATILLTAGLYWVSPKGFFPQEDIG---QINANI 567

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D     S    L +          + +    +     D+   T  L+   ++    V L 
Sbjct: 568 DTPQDMSYEGRLNVAQQLETTLLQDPDVADIVTKVDHDTTQLTLTLKAQNQRPPMSVVLK 627

Query: 650 TIQNTEIVGPKI 661
            ++      P I
Sbjct: 628 NMRAETEYLPGI 639



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 97/270 (35%), Gaps = 7/270 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              + +L T G          + +    ++PV LS V S  +S++               
Sbjct: 223 KRQMVMLQTRGDLMNAADFANVVIATRNDQPVRLSDVASVEDSIENTLSFSAVNGHNAIV 282

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L   +    + V+    +  +  K+   +P S             R  I    V ++++ 
Sbjct: 283 LSVQRQPGANIVSTIDAIRQILPKLQAQMPASVNVKLLNDRSTSIRNAIHDVTVTLMLTI 342

Query: 678 IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +++ I +  +          +L + +         FG+  +  ++  +   +G  V+D
Sbjct: 343 GLVIMVILLFLRHARATFIPALSLPVSLLGAFALMYAFGLSLDNISLMGLTIAVGLVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +VV + +   M+             K + E     +  S++     +P+    G++   
Sbjct: 403 AIVVLENI---MRYIEQGEKPFQAALKGVREVAFTVMSISLSLIAVFIPIFFMPGTIGLL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              FA  ++  I+V+A++S+ I   ++  +
Sbjct: 460 FHEFAWVVSLAILVSAAASLTIIPLLVPKL 489



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 85/217 (39%), Gaps = 7/217 (3%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + L +      + +   + + +    I   S++  +      + ++     I  ++++  
Sbjct: 804  ITLSFDLAPGKSLSDATQAITQAQEAIQLPSSVFGSYAGQAALYQQSQTSQIWLIVLALA 863

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + + + ++ W   L  +  L       L    +F +E    A+  +L LIG    + 
Sbjct: 864  VIYVILGVLYESWIHPLTILLGLPSAAVGALLALRIFNLELTFIAMIGILLLIGIVKKNA 923

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ D            +S  D I ++  +     + T++ A +  LP+A+    G  + 
Sbjct: 924  IMMID--FALAAQREQRLSPHDAIIQACLQRFRPIMMTTLCAIMGALPIALSLGAGAELR 981

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                + +  G++ +   ++F+  P+L  ++D     A
Sbjct: 982  QPMGVAIVGGLLFSQFITLFV-TPVLFLLFDREGSKA 1017


>gi|16765457|ref|NP_461072.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991045|ref|ZP_02572144.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|60390145|sp|Q8ZNQ2|MDTB_SALTY RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|16420661|gb|AAL21031.1| putative outer membrane receptor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|205330514|gb|EDZ17278.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261247342|emb|CBG25167.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994185|gb|ACY89070.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158688|emb|CBW18200.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913119|dbj|BAJ37093.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224778|gb|EFX49841.1| Multidrug transporter MdtB [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130452|gb|ADX17882.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332989061|gb|AEF08044.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 1040

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNSMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|148242410|ref|YP_001227567.1| preprotein translocase SecD subunit [Synechococcus sp. RCC307]
 gi|147850720|emb|CAK28214.1| Preprotein translocase SecD subunit [Synechococcus sp. RCC307]
          Length = 490

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 131/536 (24%), Positives = 222/536 (41%), Gaps = 67/536 (12%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M      + L   +    LL                  +    +SLGLDLRGGS L L V
Sbjct: 1   MTRPQGWLALILALAIGSLL-----------------VLRSLPLSLGLDLRGGSQLTLLV 43

Query: 61  ----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKV 115
               D     +  L    + L   +   G+   S+     ++I +     +     A+ +
Sbjct: 44  KPAGDITKIESKQLDAVKEVLERRVNGLGVSEASVTTSGSDRIVVQLPGVQDPRRAAEVL 103

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               +        + ++ L   T  K + +   +    +  +   EQ+ ++     D + 
Sbjct: 104 GTTARLEFRAQKPETQQELTNLTRLKRLIVARQEQIAGRTPTSDGEQAPDVSGPLTDLLK 163

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                                                      P N+ +        +  
Sbjct: 164 -------------------------------------QQGIEAPANASEEEQLEALLIET 186

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL- 294
                 L   + E++G  L  A       +    V + F + G  +F ++T+   G    
Sbjct: 187 ERRITPLF-GEPELTGSDLVDAGRQQQQGSQSWEVTLRFSQAGGEKFADLTKSIAGTNRL 245

Query: 295 ------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                    +    +        I  G A I+G F+ + A  L   LR G+LP+ + I+E
Sbjct: 246 LGIMLDGRSISEASVGPQFATAGITGGAATITGRFSADEARDLEVQLRGGALPLPVEIIE 305

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
            R+VG  LG+ +I     A  +G  L+ +FM+++Y   G VA  ++ L  +  LAL +L+
Sbjct: 306 NRSVGPTLGAQNIRNSLIAAGSGTALVGVFMVIIYRLPGAVALLALLLYSLFNLALYALI 365

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
             TLTLP IAG +L +G+AVD+NIL+ ER +EE R   ++F S+D GFSRA+S+IFD ++
Sbjct: 366 PVTLTLPGIAGFILSVGMAVDANILIFERSKEELRDGNTLFRSVDTGFSRAFSSIFDGHL 425

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           T LI+   L + G G VRGFA+T+ + +L+S+FTA++  R +M   + Y  ++   
Sbjct: 426 TTLISCAALGWLGSGLVRGFAVTLAIGVLLSLFTALTCTRTLMRLALSYPALRKPS 481



 Score =  107 bits (266), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 71/167 (42%), Gaps = 4/167 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + IR  ++        + +++ I ++   A+  +  L+      L  +AL  
Sbjct: 308 SVGPTLGAQNIRNSLIAAGSGTALVGVFMVIIYRLPGAVALLALLLY-SLFNLALYALIP 366

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  +G +V+  +++++R ++ ++      +    +D   +         
Sbjct: 367 VTLTLPGIAGFILSVGMAVDANILIFERSKEELRD---GNTLFRSVDTGFSRAFSSIFDG 423

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +   IS   +   G  ++  FA+ +A G++++  +++     ++  
Sbjct: 424 HLTTLISCAALGWLGSGLVRGFAVTLAIGVLLSLFTALTCTRTLMRL 470


>gi|90420041|ref|ZP_01227949.1| cation/multidrug efflux pump [Aurantimonas manganoxydans SI85-9A1]
 gi|90335375|gb|EAS49125.1| cation/multidrug efflux pump [Aurantimonas manganoxydans SI85-9A1]
          Length = 1059

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/489 (10%), Positives = 132/489 (26%), Gaps = 17/489 (3%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +   +    +E  + ++                +T++F      +     V 
Sbjct: 51  YPGANPKVIAETVATPIEEEINGVEDMLYMSSQATADGALTLTVTFQLGTDPDRAQQLVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  + +   + TT      +++                   +    D++  
Sbjct: 111 NRVSQAEPRLPEEVRALGITTTKSSPDLMMVVHLVSPDGRYDIKYLRNYAVINVKDKLAQ 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    DP ++ +   + + +       N        G      +
Sbjct: 171 IAGVGDVQVFGSGDYAMRVWLDPQKVAEEGLSASDVVAAIRQQNVQAAAGQIGAPPTSGN 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V  +  +                      I                 +   ++ 
Sbjct: 231 IELQLSVNAQGRL-------------NTPEAFGDIIIKTAPNGAVVRLRDVARVELGVSS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L++              +     +        L+A         +         
Sbjct: 278 YSLRSLLSSEPAVALPIFQSPGSNAIAVSDAIRATMDELQANMPQGVEYEIVYDTTQFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+ + +   +  ++   ++ +++I T   L LLG ++   S
Sbjct: 338 ASIEAVVHTLLEAVVLVVLVVIVFLQTWRASIIPLIAVPVSIIGTFGALYLLGFSINALS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +     +  +   +           I    +  +   V 
Sbjct: 398 LFGLVLAIGIVVDDAIVVVENVERNIEEGLAPRAATYKAMREVSGPIIAIALVLVAVFVP 457

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F     G   R FA+T+ +S +IS   ++++  A+   +++        +        
Sbjct: 458 LAFISGLTGQFYRQFAVTIAISTVISAINSLTLSPALAALLLKGHDAPKDPLTRAMDGVF 517

Query: 534 IPDCIAIQF 542
                    
Sbjct: 518 GWFFRGFNR 526



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 +  I  +   I   L    L   + N+      + L+G S  + +++ +  R   
Sbjct: 900  SLTLPIAIIMIVPTGILAALVGVWLDQGDNNIFTQIGFIVLVGLSAKNAILIVEFARD-- 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L  + ++ R    ++    L   + TS+A  + V+P+ +    G  +  +  + +  G+
Sbjct: 958  -LEMSGMATRQAAVEASRLRLRPILMTSIAFIMGVVPLVLSTGPGAEMRAAMGVAVFAGM 1016

Query: 806  VVAASSSIFIAAPILLFIY 824
            +      IF+     + + 
Sbjct: 1017 LGVTVFGIFLTPVFYVLVR 1035



 Score = 41.6 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T G   L G   N  ++  ++  IG  V+D +VV + + +N++   
Sbjct: 371 PL---IAVPVSIIGTFGALYLLGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEE-- 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
             ++ R    K++ E  G  +  ++      +P+A      G     FA+ +A   V++A
Sbjct: 426 -GLAPRAATYKAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTVISA 484

Query: 810 SSS 812
            +S
Sbjct: 485 INS 487


>gi|188582766|ref|YP_001926211.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium populi BJ001]
 gi|179346264|gb|ACB81676.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium populi BJ001]
          Length = 1056

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/602 (13%), Positives = 171/602 (28%), Gaps = 43/602 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P   P               + L    
Sbjct: 8   RPVFAWVVALFILLGGALSI-----PQLPIAQYPIIAPPA-------------IALSTSY 49

Query: 63  DDF-VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
               V       +  +   L      +       +    +IT SF           +V  
Sbjct: 50  PGASVENLYTGTTRLIEDELNGAANILSFESASDSFGVVEITASFQPGTDPGYAGVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  ++       ++ +         +  +     +IR  I++I   
Sbjct: 110 RLKRVEARLPAEVRQQGILVEEASAATLNIITLVSTDGKTDEVGLGDFLIRNVINEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +LR L    A ++      N        G +   +  
Sbjct: 170 PGVGRATLY-STERALRIWIDPDKLRGLSLNAADVTKAIGRQNVQIASGAVGAQPSPERH 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              +     + + G            +       +                 I       
Sbjct: 229 AVNF----PIIVKGQ---------MTEPEAFGAIVLRANPDGSNVRLRDVARIELGGDDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +   T +        L           +      A   
Sbjct: 276 KFTTRLNGGPAAGISVTLAPDGNAIETAKAIRAKMEELSQFFPDTVKWDIPYDITPAVDA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + + +  T  ++ L G ++ + ++
Sbjct: 336 SIEKVLHTLIEAVVLVFVVMFLFLQNIRYTLIPTIVVPIALFGTCTVMLLAGFSVNVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    N +      +      +    I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMNEEGLPPKEATRKAMGQITGAIIGITLVLIAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
           + FF G      R F+I M  SI  S   A+S+  A+   +     K            F
Sbjct: 456 MAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPALCATMLKPIEKGHGHAKGGVFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             + D    ++ R   W +  S    +  + L+      +    +G + L       VD+
Sbjct: 516 NHVVDRETARYGRGVAWFIKKSGRVMLIYLVLVAGVAYAFMRLPEGFLPLEDQGFFTVDI 575

Query: 592 SV 593
             
Sbjct: 576 QT 577



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 54/133 (40%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + L     + + +  T     L G   N+  +  ++  IG  V+D +VV + +     
Sbjct: 362 IRYTLIPTIVVPIALFGTCTVMLLAGFSVNVLTMFGMVLAIGILVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  ++   K++ +  G  +  ++      +PMA + GSV      F+I M   I 
Sbjct: 420 MNEEGLPPKEATRKAMGQITGAIIGITLVLIAVFIPMAFFPGSVGIIYRQFSIAMVTSIA 479

Query: 807 VAASSSIFIAAPI 819
            +A  ++ +   +
Sbjct: 480 FSALLALSLTPAL 492



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 78/240 (32%), Gaps = 9/240 (3%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +     +   V   +   + +         +G      F+G ++  +     PG +   T
Sbjct: 776  LHASDLLNYSVKNAQGTMVPMSSFADLKWGVGPAQIIGFNGYQSVRITGDPAPGYTTGDT 835

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                                   +   +   +      + V+I  + +     +   W  
Sbjct: 836  IKEMERLMTFLPKGFGYAWTGQSLQEKEAGSQASLLLALSVLIVFLCLA---ALYESWSI 892

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  +  + L +  ++    L G+  ++     ++T+IG S  + +++ +  R+  K   
Sbjct: 893  PISVLLVIPLGVIGSVAAVYLRGMPNDVYFKIGLITIIGLSAKNAILIVEFARELWK--- 949

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAA 809
               +      ++        V TS+A    V+P+A+  G+   S       +  G++ A 
Sbjct: 950  PGTNIVQATIQAATLRFRPIVMTSLAFIFGVVPLAIATGASSKSQQAIGTGVMGGMISAT 1009


>gi|113969427|ref|YP_733220.1| acriflavin resistance protein [Shewanella sp. MR-4]
 gi|113884111|gb|ABI38163.1| acriflavin resistance protein [Shewanella sp. MR-4]
          Length = 1051

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/658 (8%), Positives = 174/658 (26%), Gaps = 40/658 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  GL+        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGLVS-----FTKLSVREMPDVESPVVT---------VSTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SAAIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPEDANDPVVSKDNGSGEPSVYVNLSSS--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   +                          N  
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDIINALRKE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 214 TPGGQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNLSLGVITQSDANPLIVAQEVHKEVDRIQDFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++ G ++ L ++  ++
Sbjct: 334 VYNTLYVTGALVVLVLYIFIGQTRATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  +    ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVVENIFHHIERGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S+L S   A+++   +   +++     +     +   F   + +
Sbjct: 454 GMVGLLFTEFSVMLAVSVLFSSLIALTLTPVLSSKLLKANVKPNRFNRFVDSGFARMEKV 513

Query: 539 AIQF--MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    RF  +   ++ +           +   +  +    +     +  + +    
Sbjct: 514 YRVGVTQAIRFKWLAPLVILACVGGSAWLMQQVPSQLAPQEDRGVLFAFVKGAEGTSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              ++ I +       G+          P            V  ++ +          
Sbjct: 574 MTANMDIVEDRLMPLLGQGVLRSFSVQAPAFGGRAGDQTGFVIMQLEDWEHRHVTAQQ 631



 Score = 71.3 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 89/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IV 671
             + L            V + V K++  I        + +V    +  + R        +
Sbjct: 279 VNLSLGVITQSDANPLIVAQEVHKEVDRIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        +FG   NL  + A++  IG
Sbjct: 339 YVTGALVVLVLYIFI-GQTRATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVLFSSLIALTLTPVLSSKLLKANVKPNR 498



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 12/134 (8%)

Query: 699  TLILDITKTLGFFA-LFGIEFNLTAV-----AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L++  T  +G F    G+      +       ++ LIG    + +++ +      +L  
Sbjct: 878  PLVVMFTVPMGVFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFAN---QLRD 934

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              ++    I  +    L   + T+    +  +P+      G     +    + FG+  A 
Sbjct: 935  RGLALDKAIIDASTRRLRPILMTAFTTLVGAVPLIFSSGAGSESRIAVGTVVFFGMAFAT 994

Query: 810  SSSIFIAAPILLFI 823
              ++F+   +   I
Sbjct: 995  FVTLFVIPAMYRLI 1008


>gi|225849044|ref|YP_002729208.1| cation efflux [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643708|gb|ACN98758.1| cation efflux [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 1013

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/602 (9%), Positives = 150/602 (24%), Gaps = 38/602 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +        G+       L    +DR P                          
Sbjct: 8   RPITTWMFILSFIIAGIYA-----LKYIPVDRNPDVDFPVV---------SISTTYAGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              ++  +    ++  + +        S     ++IT+ F   +     A +V   +   
Sbjct: 54  PYVIDTNITRKIEDELATISGIEAINSSSYTGVSRITVIFDLDKDINIAAQEVRDAVNRA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +   +    ++         I+    +           + +++++   +    +   +
Sbjct: 114 QRQFPPNTDPPVVRKVDTSLAPIMAILLHGYADYGTMSYLADKVLKR---EFERVQGVGE 170

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L     T   +       N          +           
Sbjct: 171 VDLGGFRDYVMWVRIDPLKLAGFKLTPMDVINALKSNNVEIPSGRIDSKDREYVLRVYGK 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                EI  I +       D    +   D     +  + F     +              
Sbjct: 231 GRSPQEIENIIIKNNVRIKDVGRAEFTFDEKRGIVRFKAFDSKEAE-------------- 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +++ +     +        L           +          S +  
Sbjct: 277 ----PGIAIIVYKQSKENTVAVAKRVIDKMNELNKQLPQGLRLDINYDASTFIERSVNDA 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                + + L   ++F+ +   K   +   +I ++++  +A L   G +L   ++  + +
Sbjct: 333 LHEIVLGSILTAFMVFLFLGSFKMTFIPSMAIPVSILGAIAALFFFGQSLNTFTLLALAV 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL +D  I+V E I   N +      + + G       +  S  + +   + + F   
Sbjct: 393 AVGLVIDDAIVVMESIYRRNEEGLRGIEAAEKGTKVVIFALLASTASLIAIFIPVLFLKS 452

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              +   GFA+T+ ++I IS   ++S    +   ++   +                  + 
Sbjct: 453 VIGKFFFGFALTLIVAIAISYIVSLSFTPMISARLVEAGEKNIFQRAYDRFENWFDKALR 512

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                             I       T      I  +G   +            V    +
Sbjct: 513 WSLNNKVIVLAISLATIIIGFKLASITPKEFTPIVDEGRFLVRFETPTGSSFDFVDKKAK 572

Query: 600 SL 601
            L
Sbjct: 573 EL 574



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 7/166 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            V +I++ IA+ + +   F+        + TL   ++   G   + G   N+T+   ++ L
Sbjct: 849  VALIVALIAVYMVLASLFESLIHPFTVLLTLPFAVSGVFGLILITGQTLNVTSYFGIILL 908

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPM 786
            IG    D V+  +R+   ++L    +   + I ++  E L   + T++      I V   
Sbjct: 909  IGLVTRDSVLFIERI---IQLKKEGLDTINAILQARKERLRPILMTTLTIFASLIPVSLG 965

Query: 787  AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +    AI +  G++ A   S+F+   + + I   R    R
Sbjct: 966  LTEGSEMRQPLAIAVIGGLITALPLSLFVIPIMYVIIDKIRFLVKR 1011



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 77/249 (30%), Gaps = 1/249 (0%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V                 +                ++  +    ++VA  + +     ++
Sbjct: 246 VRIKDVGRAEFTFDEKRGIVRFKAFDSKEAEPGIAIIVYKQSKENTVAVAKRVIDKMNEL 305

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLI 701
            + +P     +            +   +  +++ +I    +       +         + 
Sbjct: 306 NKQLPQGLRLDINYDASTFIERSVNDALHEIVLGSILTAFMVFLFLGSFKMTFIPSMAIP 365

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + I   +     FG   N   + A+   +G  ++D +VV + + +  +     I   +  
Sbjct: 366 VSILGAIAALFFFGQSLNTFTLLALAVAVGLVIDDAIVVMESIYRRNEEGLRGIEAAEKG 425

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            K +   L  S  + +A FI VL +    G     FA+ +   I ++   S+     I  
Sbjct: 426 TKVVIFALLASTASLIAIFIPVLFLKSVIGKFFFGFALTLIVAIAISYIVSLSFTPMISA 485

Query: 822 FIYDWRAKN 830
            + +   KN
Sbjct: 486 RLVEAGEKN 494


>gi|308049006|ref|YP_003912572.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
 gi|307631196|gb|ADN75498.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
          Length = 1033

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 62/601 (10%), Positives = 169/601 (28%), Gaps = 26/601 (4%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
            E      +   +    ++  S +        + R   ++IT++F            V  
Sbjct: 51  YEGASAAVMEDQITKPIEDQLSGISGIDTIESTSRNGSSQITVNFDLDWDIMEGLSDVRD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  D    +++ +     +++       +     IE +    R  +D++ + 
Sbjct: 111 AVARAQRSLPDDADDPMVLKSNVSGDAVLRLSLRSAE--MDRIELTDFAERVLVDRLSLV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q      +   +  E DPS +     + + +                         
Sbjct: 169 SGVSQVSLYGDLERVVYLELDPSAMAGRGISVSAVETALNNQ------------------ 210

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N  L   ++      ++                +   +      +      I       
Sbjct: 211 -NLELPAGQLRNRDQVMSVRLERVLKNVEDFSRVVVRYDDDGSPIYLSDIARIYDGAKTE 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           + ++  +     +    L   ++          V          
Sbjct: 270 NSIFKSNGLNALGFAIAAQSDANPINVAKGVRALIDQIQPQLPQGMELEVAYDATIFIER 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T  + A LV+ VL++ +   +  L+   ++ +++I    +    G +L + ++
Sbjct: 330 SINEVYQTLFVTAALVVAVLYLFLGQARATLIPAVTVPVSLIAAFMVAQFAGFSLNILTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I +   +  S   +   G       +  +    ++  + +
Sbjct: 390 MALILAIGLVVDDAIVVVENIFKHLERGSSPLVAAYNGTREVGFAVIATTAVLVMIFLPI 449

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP--LSRFF 532
            F GG        F++T+ ++++ S   A+++   M   +++     +            
Sbjct: 450 AFAGGMVGKFFTEFSVTLAVAVIFSSLIALTLTPVMGASLLKANVKPNRFNAWVNRQFAA 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L             +   G SI+        L    +N          +  +  +  + +
Sbjct: 510 LENGYRRSLERSLSYKWAGPSIIVLALVAVALLFPRINTEFVPTEDRGVLFVFVKGAEGT 569

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                +++++  +        E   L  +         +          + +        
Sbjct: 570 AFDRMVKNMEAVEARLLPLMEEDGPLQAMNLSTPAFGNRGDQTGFFVLLLKDWAVREQHS 629

Query: 653 N 653
           +
Sbjct: 630 S 630



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 81/265 (30%), Gaps = 12/265 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +   ++ V  +       +                F       +              V 
Sbjct: 238 EDFSRVVVRYDDDGSPIYLSDIARIYDGAKTENSIFKSNGLNALGFAIAAQSDANPINVA 297

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKW 690
           + V+  I +I P         V    +  + R        + V  + +  ++Y+    + 
Sbjct: 298 KGVRALIDQIQPQLPQGMELEVAYDATIFIERSINEVYQTLFVTAALVVAVLYL-FLGQA 356

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    T+ + +          G   N+  + A++  IG  V+D +VV + +    K 
Sbjct: 357 RATLIPAVTVPVSLIAAFMVAQFAGFSLNILTLMALILAIGLVVDDAIVVVENI---FKH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
                S          E     + T+    +  LP+A  GG V      F++ +A  ++ 
Sbjct: 414 LERGSSPLVAAYNGTREVGFAVIATTAVLVMIFLPIAFAGGMVGKFFTEFSVTLAVAVIF 473

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           ++  ++ +   +   +     K  R
Sbjct: 474 SSLIALTLTPVMGASLLKANVKPNR 498



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 80/245 (32%), Gaps = 9/245 (3%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                S  R  + SL   +        ++    +     G       + E +         
Sbjct: 770  MTTPSGERITMASLVQFEEIGSASRLKRYQRTKSVTIQGYVGEGHTLGEALNLLEQTAKE 829

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF---ALGAITTLILDI 704
            +     T     +       +    ++ +   M+ Y+ +  ++      +  + T+ + I
Sbjct: 830  MLPADITIDYKGESKDYKENQADTFLVFALALMVAYLVLAAQFESFINPMVIMLTVPMGI 889

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
               L    L G   NL +   ++ LIG    + +++ +      +L    ++F   + + 
Sbjct: 890  VGALLGLLLTGESLNLYSQVGMIMLIGMVTKNGILIVEFAN---QLRDKGVAFEQAVVQG 946

Query: 765  INETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             +  L   + T+       +P+ +    G     +  + + FG+ +A   ++++   +  
Sbjct: 947  ASARLRPILMTAFTTLFGAVPLLLATGAGAESRYAIGVVIFFGMALATVITLYLVPMMYR 1006

Query: 822  FIYDW 826
             +   
Sbjct: 1007 LMAKR 1011


>gi|269958406|ref|YP_003328193.1| preprotein translocase subunit SecF [Anaplasma centrale str.
           Israel]
 gi|269848235|gb|ACZ48879.1| preprotein translocase subunit SecF [Anaplasma centrale str.
           Israel]
          Length = 309

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/292 (27%), Positives = 138/292 (47%), Gaps = 5/292 (1%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-PVD 590
            +IPD I   F+R     +  S +  + S+ ++   G+  G DF GG+      N     
Sbjct: 4   RIIPDSINFDFVRHGKLALFASFVLLLSSVLIIVLKGVTLGTDFTGGVVADFRLNEGHTS 63

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR+ L    +  +S Q    +    + +            +  +        +   T
Sbjct: 64  VERVRAVLSDSGLSGLSVQGVGDDGQEFMVIFRGAIGPNGSDELQRIKSAL--NSMGAIT 121

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +  + VG ++    + +GIV V+ S + M +Y+  RF+W FA+G +  L+ D+  T+G 
Sbjct: 122 YRRLDYVGAQVGGAQVVRGIVAVLCSLVGMFLYLCCRFRWQFAVGGVLALVHDVVITMGI 181

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETL 769
            +  GIEF L A A +L +IGYSVND VV+YDR+R+ +        S   +I+  IN TL
Sbjct: 182 VSATGIEFGLPATAGILMIIGYSVNDSVVIYDRIRELISGNGLCGKSMGSIINAGINSTL 241

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA-PIL 820
            R++ TS    ++ +P+ +     +    I    G+V+   SSIFI+  P++
Sbjct: 242 SRTLLTSGTTLLAAVPLVLLCEGAVRDLGIIAFCGVVIGTYSSIFISTIPLM 293


>gi|116328773|ref|YP_798493.1| preprotein translocase subunit SecD [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116331684|ref|YP_801402.1| preprotein translocase subunit SecD [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|116121517|gb|ABJ79560.1| Preprotein translocase, SecD subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|116125373|gb|ABJ76644.1| Preprotein translocase, SecD subunit [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 642

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 132/537 (24%), Positives = 256/537 (47%), Gaps = 26/537 (4%)

Query: 19  LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78
           L++   + L  + ++ + +      I LGLDL+GG  + L+ D +D+     + Y  E+ 
Sbjct: 103 LILEAKSKLRPTFVEEWITKGRPLTIKLGLDLQGGMRVALKGDFEDYTFKLRESYIKEIE 162

Query: 79  ---SFLKKEGIGVFSMRQIQNKIT-LSFADSRFKENIADKVTLFLQGVNSKLN-VDPKKN 133
                +          ++ +++++ +             ++      ++++L   +  + 
Sbjct: 163 TLQKTVADSSADEKEKKKAEDRLSEIESYFELSPSRKLLELEKAKLIIDNRLTSQNLTEP 222

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST-----IQRLGSHR 188
            +    +++   V      +      + Q+ E +  R+++   S                
Sbjct: 223 QVRIQKDQDSIEVSLPGVTNSSQILEVIQNTETVEYRLEEPENSAGNGLTYAAMIQQEEN 282

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD----------- 237
            L++L   ++   ++       K+   +           + +   +              
Sbjct: 283 RLLELKRREETDIVQYQNIVKQKLGRAEQDKFLQALEDKYKIPKDKYRVFAYWARGNNQN 342

Query: 238 -----GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                    ++E  + + G  +  A  +F+  +   +V  +    GA +FFE+T  N G+
Sbjct: 343 SPLLPRRFIVLEKAIALDGRDMRDARPSFENNSFGYIVSFTLTSSGAEKFFEITSQNKGR 402

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            LA+V   +V++AP I  AI  G AQI G+F  E A  LA ++  G+LPI L ++E R +
Sbjct: 403 NLAIVWGDKVVSAPTIRGAIAGGVAQIDGSFAKEEAVDLANVISEGALPIPLRVLEMRFI 462

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG +SI  G  A++ G VL++ +MI++Y   GLVA+ ++F N+++  ALLSL+G TL
Sbjct: 463 GPTLGIESIEVGMKAVLIGFVLVMFYMILIYRLSGLVANIALFANILILSALLSLMGFTL 522

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP  AGI+L +G+AVD+N+++ ERI+EE    +S   ++  GF  A+ TI DSN+T LI
Sbjct: 523 TLPGFAGIILTVGMAVDANVIIYERIKEELWAGKSAAVAVAQGFDNAFWTIIDSNVTTLI 582

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + +++   G G ++GFAIT+   I+ S+FT++   R +M  ++    ++ + +    
Sbjct: 583 SGILMIRLGNGPIKGFAITLCWGIVTSLFTSLFFSRLVMDLLVNKLGVQRLRLGFKK 639



 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 109/319 (34%), Gaps = 7/319 (2%)

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
            +  +    K+        + +    +  +    R RF  +  +I      +        
Sbjct: 314 FLQALEDKYKIPKDKYRVFAYWARGNNQNSPLLPR-RFIVLEKAIALDGRDMRDARPSFE 372

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N    +     L             ++   +L I               +       D  
Sbjct: 373 NNSFGYIVSFTLTSSGAEKFFEITSQNKGRNLAIVWGDKVVSAPTIRGAIAGGVAQIDGS 432

Query: 630 AQTRVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                   +   I+E      ++      +GP +  E I  G+  V+I  + ++ Y+ + 
Sbjct: 433 FAKEEAVDLANVISEGALPIPLRVLEMRFIGPTLGIESIEVGMKAVLIGFVLVMFYMILI 492

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++    L A   L  +I       +L G    L   A ++  +G +V+  V++Y+R+++ 
Sbjct: 493 YRLS-GLVANIALFANILILSALLSLMGFTLTLPGFAGIILTVGMAVDANVIIYERIKEE 551

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       S    + +  +      + +++   IS + M   G   I  FAI + +GIV 
Sbjct: 552 LWA---GKSAAVAVAQGFDNAFWTIIDSNVTTLISGILMIRLGNGPIKGFAITLCWGIVT 608

Query: 808 AASSSIFIAAPILLFIYDW 826
           +  +S+F +  ++  + + 
Sbjct: 609 SLFTSLFFSRLVMDLLVNK 627


>gi|331008537|gb|EGH88593.1| multidrug RND efflux transporter, permease MdtB [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 1036

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGGLRWVLRHQPLTLLAALATLALTVLLYIVVPKGFFPVQ 557



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.5 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I ++        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPETAIYEAALLRFRPILMTTLAALFGAIPLMLASGSGAGLRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      + +R
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLCRRWSR 1023


>gi|289648697|ref|ZP_06480040.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 1036

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGGLRWVLRHQPLTLLAALATLALTVLLYIVVPKGFFPVQ 557



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.8 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I ++        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPETAIYEAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      + +R
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|283832506|ref|ZP_06352247.1| multidrug RND efflux transporter, permease protein MdtB
           [Citrobacter youngae ATCC 29220]
 gi|291072171|gb|EFE10280.1| multidrug RND efflux transporter, permease protein MdtB
           [Citrobacter youngae ATCC 29220]
          Length = 1040

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/586 (9%), Positives = 153/586 (26%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPIAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPDDLPNPPIYSKVNPADPPIMT-LAVTSSAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETIRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPARAVTLSANDQMQSADEYRQLVIAYKNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    +  +L           V          S +  
Sbjct: 284 ANKQQAIVMNVQRQPGANIISTADNIRQMLPLLTESLPKSVKVSVLSDRTTNIRASVADT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   +       K+ +    +      +I 
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQASLRKQNRFSRASERMFDRVIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                         + +S+     ++ ++    +  G        +
Sbjct: 524 GYGHWLAKVLNHPWLTLSVALGTLALSVMLWVFIPKGFFPIQDNGI 569



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|150397234|ref|YP_001327701.1| acriflavin resistance protein [Sinorhizobium medicae WSM419]
 gi|150028749|gb|ABR60866.1| acriflavin resistance protein [Sinorhizobium medicae WSM419]
          Length = 1044

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/522 (12%), Positives = 156/522 (29%), Gaps = 48/522 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++ ++I   GL            +   P                   +  E D
Sbjct: 26  RRPIFALVVNTLIVVAGLAA-----WNGVEIRELPQVDQPV-----------VSVTTEFD 69

Query: 62  E--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + ++  +    +   S ++       +    ++++TL F+D+      A+ V   L
Sbjct: 70  GASPETIDREVTSVVEGAVSRVQGIKDISSTSSFGRSRVTLEFSDTTDIGQAANDVRDAL 129

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +  +L  D  +  +V        I+      D +     + ++ +  +  D++   E 
Sbjct: 130 GRITGQLPDDADEPRIVKADSDSQPIMRLALTSDTMSMD--DMTLLVENEISDRLAAVEG 187

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                           + + ++L     T A +       +               S   
Sbjct: 188 VADVTVYGDQEKIFRIDVNQAKLAGRGVTVANLREALANASYDVPAGSLTSANQDISVRA 247

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              ++   +   + L                                   +         
Sbjct: 248 TADLQTPEQFENLML------------------------GNNVRLRDVATVTLGPDTGTS 283

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS-LPIKLNIVEERNVGADLGS 358
                           +AQ +     +    +   + +    P     V   +     G+
Sbjct: 284 ALRSNGREGIGLGIIRQAQSNTVDISQGVRSVVNAISSDILPPGTELKVTSDDAVFINGA 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               +    +   +V +V+++ +L  +  L+   ++ + +I T+A + L G ++ + ++ 
Sbjct: 344 IHEVEIALFVAVFIVTLVIYLFLLDWRATLIPTITMPIALIGTVAAIYLAGFSINILTLL 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IVL  GL VD  I+V E I     +      +   G    +  +  +  T     V L 
Sbjct: 404 AIVLATGLVVDDAIVVLENIVRRRAEGLGPRAAAVHGTLEVFFAVLATTATLAAVFVPLS 463

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           F  G      R F   +  SIL+S F ++++   +   ++  
Sbjct: 464 FLPGQTGGLFREFGFVLAFSILLSSFISLTLCPMLASRMLTK 505



 Score = 87.8 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 76/247 (30%), Gaps = 11/247 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +   +R         D             + L            + + V+  +  I    
Sbjct: 264 NNVRLRDVATVTLGPDTGTSALRSNGREGIGLGIIRQAQSNTVDISQGVRSVVNAISSDI 323

Query: 650 TIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYI-WIRFKWYFALGAITTLILDI 704
               TE+         I   I    + + ++   + + I      W   L    T+ + +
Sbjct: 324 LPPGTELKVTSDDAVFINGAIHEVEIALFVAVFIVTLVIYLFLLDWRATLIPTITMPIAL 383

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T+    L G   N+  + A++   G  V+D +VV + +   ++     +  R      
Sbjct: 384 IGTVAAIYLAGFSINILTLLAIVLATGLVVDDAIVVLENI---VRRRAEGLGPRAAAVHG 440

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
             E     + T+       +P++   G        F   +AF I++++  S+ +   +  
Sbjct: 441 TLEVFFAVLATTATLAAVFVPLSFLPGQTGGLFREFGFVLAFSILLSSFISLTLCPMLAS 500

Query: 822 FIYDWRA 828
            +     
Sbjct: 501 RMLTKER 507



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             V    + + + + +  +F+ +   L  ++T+ L +   +    L G   N+ +   ++ 
Sbjct: 864  FVTFGFAIVIIFLVLAAQFESFVSGLIIMSTVPLGLACAIFAMILTGNTLNIYSQIGLVM 923

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G    + +++ +      +L       R  I+ + N  L   + T +A  +  +P+ +
Sbjct: 924  LVGIMAKNGILIVEFAN---QLRDRGQDVRSAIENAANIRLRPVMMTMIATVVGAVPLVL 980

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                G     +    +  G+ +A   ++++     L I  +   +A
Sbjct: 981  ASGAGAEARIALGWVLVGGLGLAVIVTLYLTPVAYLVIAGFTKPHA 1026


>gi|239816580|ref|YP_002945490.1| acriflavin resistance protein [Variovorax paradoxus S110]
 gi|239803157|gb|ACS20224.1| acriflavin resistance protein [Variovorax paradoxus S110]
          Length = 1063

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/515 (12%), Positives = 149/515 (28%), Gaps = 29/515 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATALLMVAIVLAGLVGLRLLPLAALPQVDYPTIQ--------------VQTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + ++  +    +     +              + +TL FA  +  +    +V   +   
Sbjct: 56  PEVMSRTVTAPLERQFGQMAGLNRMSSVSSAGVSIVTLQFALDQTLDVAEQQVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     +        + +L+   +        E    +  +   +I        
Sbjct: 116 GSLLPADLPAPPVYAKVNPADAPILT-LAVSSGTMPLTEVQNLVNTRLAQKISQVGGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + D + L  +      +       N +     F       +      
Sbjct: 175 VSLSGGQRPAVRIQADTNALASVGIGLDTLRSAITAANANSAKGSFDGPRRAYTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +   + +          T    V    +      +  +        L        
Sbjct: 235 LVTADDYKNLIVAWKNGAPVRMTDVARVVDGAENTQLGAWAALRAGEREPVLY------- 287

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T++        L+A         V          S S  
Sbjct: 288 ----PAIILNVQRQPGANVIGTVDAIKKQLPELQASLPGSLKVEVLSDRTTGIRASVSHV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   +V++V+F  +   +  ++A  ++ ++++ T  L+ LLG +L   S+  + +
Sbjct: 344 QLELGLAVVMVVLVIFFFLHSVRATVIASLAVPISLVGTCGLMYLLGYSLNNLSLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +    F +   G ++   TI    ++ +   + L F G 
Sbjct: 404 ATGFVVDDAIVMIENIARYLEEGDPPFKAALKGATQIGFTIISLTVSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA+T+ ++ILIS   ++++V  M    
Sbjct: 464 VVGRLFREFAVTLAITILISAVVSLTLVPMMSARW 498



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 62/165 (37%), Gaps = 13/165 (7%)

Query: 673 VIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           + +    +++ + I F        + A   + + +  T G   L G   N  ++ A+   
Sbjct: 345 LELGLAVVMVVLVIFFFLHSVRATVIASLAVPISLVGTCGLMYLLGYSLNNLSLMALTIA 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            G+ V+D +V+ + +    +             K   +     +  +++    ++P+   
Sbjct: 405 TGFVVDDAIVMIENI---ARYLEEGDPPFKAALKGATQIGFTIISLTVSLIAVLIPLLFM 461

Query: 790 G---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           G   G +   FA+ +A  I+++A  S+     ++  +     K  
Sbjct: 462 GDVVGRLFREFAVTLAITILISAVVSL----TLVPMMSARWLKPQ 502


>gi|114327335|ref|YP_744492.1| acriflavin resistance plasma membrane protein [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315509|gb|ABI61569.1| acriflavin resistance plasma membrane protein [Granulibacter
           bethesdensis CGDNIH1]
          Length = 1044

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/687 (12%), Positives = 197/687 (28%), Gaps = 46/687 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +    GL+      L +  + +FP  +P               + +   
Sbjct: 8   RRPRLAIVIAIVTTIAGLIS-----LTRISVAQFPDIVPP-------------QVQVTAS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   ++      + + +     +         +    +T+SFA     +       
Sbjct: 50  YPGASAAVVESSVAQPIEAQVVGVDQMLYMKSTAGNDGSYNLTVSFALGTNPDIDTVNTN 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q   S+L    ++  L         +            + +  +  +    +D I  
Sbjct: 110 NRVQTATSRLPEIVQRQGLTVQKRSSAILEFISFYSSDGTKNPLFITNYLQISVMDAISR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           +    Q +   + +  +    D  RL  L  + + ++      N        G R +   
Sbjct: 170 TPGVGQAMLFSQQMYSMRVWFDIHRLTSLNLSPSDIAAAIQSQNTVAPVGRIGARPIGPD 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q+ V+ +  +                 +    I                 +      
Sbjct: 230 QQFQFNVQTQGRL-------------ITKEQFGNIIVRANPDGSILRVRDVARVELGGQN 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 L                +   T E      A L     P     V   +     
Sbjct: 277 EDSETRLNGKPSVTVAVYLSPGANAVNTAEAVNKRLAGLAERFPPGMKYQVSYDSTTFVT 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T A    LV++V+F+ +   +  ++   ++ +++I   A L  +G +    S
Sbjct: 337 DTIHEVLRTLAEAFVLVVLVVFLFLGSLRATIIPSVAVPVSLIGAFAGLLAMGYSANTVS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           +  +VL IG+ VD  I+V E +     +    S   +      +  + I    +  L   
Sbjct: 397 LLAMVLAIGIVVDDAIVVVENVERVMEEEPELSPQDATIKAMEQITAPIIAITLVLLSVF 456

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V + F  G +    R FA+T+ +S+LIS   A+++  A+    +R+   K   +  +SR 
Sbjct: 457 VPVAFIPGISGQLFRQFAVTISISMLISAINALTLSPALCAVFLRHTGEKRGILGFISRG 516

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-----KGGIQLGVLAN 586
                      +        +SIL        +F         F     +GG  + V   
Sbjct: 517 IDKVRDGYAAIVLRLLRISVLSILLVGVCGGGIFMISRMTPTGFLPEEDQGGFFVIVQLP 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               ++   + +E L                + R             +   +K       
Sbjct: 577 DGASVNRTAAVMEKLNDIIHPIPGVRDVVQIIGRSILDSAQEPNAGFMFVKLKNFDQRTD 636

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
           P  + Q         ++++    +  +
Sbjct: 637 PSMSAQAIIGRIAGAAQQIREAIVFPL 663



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/259 (10%), Positives = 84/259 (32%), Gaps = 6/259 (2%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                 +        SV   ++ ++                 + +   P   V+    L  
Sbjct: 780  QDLWQIYVRNKNGESVPLRSIATVHFVVGPQVITRYNNYRSITINGGPAPGVSSGTALNT 839

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
            + +   + +P            +      + G +  +    A L  + +   W   +  +
Sbjct: 840  MAEVSRKTLPPGYDFEWTGTAYQEVAASGQTGAILGLALLFAYLFLVGLYESWMIPVPVL 899

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             ++ + +  +     +  +  ++ A   ++ LI  +  + +++ +  ++         S 
Sbjct: 900  MSVSVGVLGSFAGILIAHLSLDIYAQIGLVVLIALAAKNGILIVEFAKE---RREHGDSI 956

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIF 814
            ++   +         + TS+A  + +LP+ V  G + I        +  G++ A+   IF
Sbjct: 957  KEAAMQGAKTRFRAVMMTSIAFILGLLPLVVAHGAAAISRRDVGTSVMAGMLAASCIGIF 1016

Query: 815  IAAPILLFIYDWRAKNARI 833
            +   + +     R +   +
Sbjct: 1017 MIPMLYVTFQSLRERLKSL 1035


>gi|24216625|ref|NP_714106.1| cation/multidrug efflux pump [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24197958|gb|AAN51124.1| cation/multidrug efflux pump [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 1055

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/585 (12%), Positives = 157/585 (26%), Gaps = 37/585 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  +  ++ + I   G +        +  + + P                   L L   
Sbjct: 8   RNPIFSWMMMAAIILFGSI-----GFSRMGVSQMPDVDFPVV---------NVSLTLTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E+   ++               +T+    SR  +    ++   L  
Sbjct: 54  NAQVMETDVVDPIEEVLMTVEGVTEVRSISSDGSAAVTVELELSRNVDVAVQEIQTKLAQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V++KL  +    ++  +   +  I+              E+ + +     D+        
Sbjct: 114 VSNKLPEEMDPPVITKSNPDDTPIIWVSLTAVD--KSEKEKMLFVKDFLKDKFQKIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +    +   +    DP++L +       +       N          R    S     
Sbjct: 172 EIILGGYVDRTINVYLDPTQLSRNEIAVDDIVNTLKEQNLEVPSGRLENRTNEISLRAVG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +   I LN  +                     R         +   L  V    
Sbjct: 232 EVPTAEQFGNIFLNSRSG----------------SPLFRSIRLKDISIVEDGLGEVRRIS 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              L+          +   N G    S + 
Sbjct: 276 RFNGISAIAIGIKKLKGANAVQVGNLVKDKVKELKPKLPKGYDLTISNDNTGYIRDSVNE 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A L   V  + +   K       +I  +VI T   L   G T+   ++ G+ 
Sbjct: 336 LEFTLIFSAILTGFVCRLFLGNWKSTGNVLLAIPTSVIGTFLFLYFAGFTINTFTMLGLS 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+V E I       +S F +   G +        + +  +   + + F  
Sbjct: 396 LATGIVVDDAIMVLENITRHREMKKSWFQAALEGATEIRFAALAATLAVVAIFLPVAFMK 455

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIPD 536
           G   R    F +T+ +S+L+S+F A+S            + K  K    +  +       
Sbjct: 456 GIIGRYFLEFGVTISVSVLLSLFEALSFTPMRASLYAENKKKNDKKSIFSVSAHEIWNRW 515

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              I   +     +   + +S           L +      G  +
Sbjct: 516 ISKISIFKKMDPIMERFLEYSTIFYERSIDFVLKFPRWIVFGSTI 560



 Score = 42.8 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 70/221 (31%), Gaps = 10/221 (4%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----IVGVI 674
           + +  +        +V  +VK K+ E+ P         +    +  +           + 
Sbjct: 283 IAIGIKKLKGANAVQVGNLVKDKVKELKPKLPKGYDLTISNDNTGYIRDSVNELEFTLIF 342

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +   +       W      +  +   +  T  F    G   N   +  +    G  V
Sbjct: 343 SAILTGFVCRLFLGNWKSTGNVLLAIPTSVIGTFLFLYFAGFTINTFTMLGLSLATGIVV 402

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +D ++V + +    +      S+     +   E    ++  ++A     LP+A   G + 
Sbjct: 403 DDAIMVLENI---TRHREMKKSWFQAALEGATEIRFAALAATLAVVAIFLPVAFMKGIIG 459

Query: 795 G---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                F + ++  ++++   ++           + + KN +
Sbjct: 460 RYFLEFGVTISVSVLLSLFEALSFTPMRASLYAENKKKNDK 500


>gi|167629658|ref|YP_001680157.1| acrb/acrd/acrf family transport protein [Heliobacterium
           modesticaldum Ice1]
 gi|167592398|gb|ABZ84146.1| acrb/acrd/acrf family transport protein [Heliobacterium
           modesticaldum Ice1]
          Length = 1066

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/554 (10%), Positives = 154/554 (27%), Gaps = 42/554 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++  M   +GL            +D +P+                  +     
Sbjct: 9   KRPVAMTMIVLMFVVLGLYS-----YRMLGVDLYPNINTPFI---------SVSVSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + + K         +    + + F  +   +  A+ V   +  
Sbjct: 55  GAEEVESQIVKPIETAVASISKVDRISAQASEGFGVVIIEFELTADGDQAANDVQKKVDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D  + +++        ++       +      + + +++++ +          
Sbjct: 115 IKGMLPEDAAEPVVIKMDFNAAPVMTLALKSARPAQETYDLAEDLLKEPL---LKLPGVT 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    D +RL+    +  ++  H    N ++         L  +     
Sbjct: 172 NVSLVGGQRREIQINIDKARLQGYGLSIHRVIDHLKNENLNQPSGRLDQPDLEYNVRVMG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   ++  I +                          +        +   L       
Sbjct: 232 QFKTVKDVEDIQI--------------------PLANGAKIPLKAIATVTDGLHEARTIS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +       A+   +   S     +        ++    P    IV          +   
Sbjct: 272 RVNGEPAIAAVIFKQNDASIVDVGDAVKKALPAIKKNLPPDMELIVARDFSDYVHNALKG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + +           LF  +   +  +    +I  ++I TL  +   G +  + S+ G+ 
Sbjct: 332 TRSSIIEGIITTAFALFFFLRDWRSMVTVIIAIPTSLIATLMGMYFAGFSFNMMSLLGMA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSL---DMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD +I+V E I       +S   +        S A   I  S++        + 
Sbjct: 392 LCIGILVDDSIVVLENIHRHRAMGKSAVAAALEGRAEISMAAIAITLSDVVVFAPIAFMG 451

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFFLIPD 536
              G   R F +T+ ++ L S+F + ++   +       +    K +             
Sbjct: 452 GMVGQFFRQFGLTVVIATLFSLFISFTLTPMLSARFYMEEDPETKELKAKKRQASLYGLF 511

Query: 537 CIAIQFMRARFWGV 550
              I    +RFW +
Sbjct: 512 LRRISPYSSRFWSI 525



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 7/195 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                V + +      + P   +         +   L       +           +   
Sbjct: 293 DVGDAVKKALPAIKKNLPPDMELIVARDFSDYVHNALKGTRSSIIEGIITTAFALFFFLR 352

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  I  +   +  TL      G  FN+ ++  +   IG  V+D +VV + +    
Sbjct: 353 DWRSMVTVIIAIPTSLIATLMGMYFAGFSFNMMSLLGMALCIGILVDDSIVVLENIH--- 409

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      S      +   E    ++  +++  +   P+A  G   G     F + +    
Sbjct: 410 RHRAMGKSAVAAALEGRAEISMAAIAITLSDVVVFAPIAFMGGMVGQFFRQFGLTVVIAT 469

Query: 806 VVAASSSIFIAAPIL 820
           + +   S F   P+L
Sbjct: 470 LFSLFIS-FTLTPML 483


>gi|153001692|ref|YP_001367373.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           baltica OS185]
 gi|151366310|gb|ABS09310.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS185]
          Length = 1052

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/694 (10%), Positives = 183/694 (26%), Gaps = 49/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFFITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + A +       N        G +    +D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGLSPADIIAAVREQNQQAAAGSLGAQPSGSADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I                 I          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIIKVGQNGEVNRLKDVARIELGATSYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L  G        +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAKMAELSKGFPEGLTYEIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S+ G+
Sbjct: 340 AVMKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIAAGLSPVAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRA---------------MMIFIIRYKKMKS 522
               G   + FA+T+ +S  IS   ++++  A               +   + +      
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKSHDAPKDGLTRLMDKLLGGWL 519

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                            +     RF G+   +   + ++  +       G       Q  
Sbjct: 520 FTPFNRLFSRASDGYGWLVRKVIRFGGIIGLVYLGMVALTGVQFAHTPTGYVPGQDKQYL 579

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D + +      ++       N  G  + +                  +     
Sbjct: 580 VAFAQLPDAASLERTDTVIKKMSEIALNHPGVAHSIAFPGLSINGFTNSPNSGVVFVALD 639

Query: 643 TEIVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
              +  S   +   +  ++++E   I+   + + 
Sbjct: 640 DFELRKSPELSANAIAGQLNKEFAGIQDAFIAIF 673



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/383 (9%), Positives = 107/383 (27%), Gaps = 9/383 (2%)

Query: 454  MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
             G   A+  IF       + T+  F                 +   +         +   
Sbjct: 663  AGIQDAFIAIFPPPPVQGLGTIGGFRLQIQDRANLGYEALYQVTQQVMYKAWADPQLAGI 722

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
               Y+         + R       +++  +         S   +  +             
Sbjct: 723  FSSYQVNVPQLELDIDRTKAKQQAVSLDQIFQTLQTYMGSTYVNDFNRFGRTYQVNMQAD 782

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            +        +   +  +L+     L S      S                  G   A   
Sbjct: 783  EAFRQSPQQISQLKVPNLNGDMIPLGSFINVSQSSGPDRVMHYNGFTTAEINGGPAAGVS 842

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELI--RKGIVGVIISAIAMLIYIWIRFK-W 690
              +        +        T        ++++    G++   +  + + + +  +++  
Sbjct: 843  TGQAQAAIEKILAETLPNGMTYEWTELTYQQILAGNTGLLVFPLVILLVFMVLAAQYESL 902

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + + +   L    ++G + N+     ++ L+G +  + +++ +  ++    
Sbjct: 903  SLPLAIILIIPMTLLSALSGVLIYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKE---K 959

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                ++  D I ++    L   + TS+A  + V+PM      G  +  +  + +  G++ 
Sbjct: 960  QDHGMAPMDAILEAARLRLRPILMTSIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIG 1019

Query: 808  AASSSIFIAAPILLFIYDWRAKN 830
                 + +       +    +K 
Sbjct: 1020 VTVFGLILTPLFYYALAKRGSKK 1042



 Score = 43.1 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 17/233 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     I      G     +    +   +       E +  +I 
Sbjct: 268 RIELGATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAKMAELSKGFPEGLTYEIV 327

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
               +    + E V   +   ++   +V V+               W  ++  +  + + 
Sbjct: 328 YDPTVFVRGSIEAVMKTLLEAVLLVVLVVVLFLQT-----------WRASIIPLVAVPVS 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K
Sbjct: 377 LVGTFAFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAA---GLSPVAATQK 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
           ++ E  G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 434 AMKEVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|219847447|ref|YP_002461880.1| protein-export membrane protein SecF [Chloroflexus aggregans DSM
           9485]
 gi|219541706|gb|ACL23444.1| protein-export membrane protein SecF [Chloroflexus aggregans DSM
           9485]
          Length = 333

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/314 (23%), Positives = 144/314 (45%), Gaps = 27/314 (8%)

Query: 544 RARFWGVGISILFSICSICLLFTHGL----------NYGIDFKGGIQLGVLANRPV---- 589
           R R+W    S+L  +  + +LF H L             IDF GG    +          
Sbjct: 6   RRRYWWFAFSLLVILPGLYMLFLHPLITTGRFAIGLKPSIDFAGGALWELRFPDTAPEKL 65

Query: 590 DLSVVRSNLESLQIGDISFQ----NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
               +     +    +   Q      +G+      ++ +P       R +E V   +T  
Sbjct: 66  TTDQIAQAFATAGFENAQVQLSPTVINGQTVAAALVRTRPLSESDPNREIEAVTNALTAT 125

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTL 700
               + +  E VGP +S E  R  ++ V+ +++ +L+Y+   F+       + + A+ ++
Sbjct: 126 FGTVSRERLESVGPTVSAESTRSAVIAVLGASLVILLYLTWAFRKAPHPVRYGVCALISM 185

Query: 701 ILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + D+   LG  A+ G    +E +   + A+LT + +SV+D +VV+DR+R+N+     + +
Sbjct: 186 LHDVLVVLGIAAILGATIGLEVDALFLTALLTTLSFSVHDTIVVFDRIRENLLNRHPAET 245

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           F D+++ S+ +TL RS+ T +  F ++  + ++GG  I +F + +  G++    SSIF A
Sbjct: 246 FDDIVNHSLVQTLPRSINTQLTTFFTLTALLLFGGDTIRNFVLMLLIGLISGTYSSIFNA 305

Query: 817 APILLFIYDWRAKN 830
           A +L+       +N
Sbjct: 306 AQLLVVWEHREWRN 319


>gi|212634178|ref|YP_002310703.1| acriflavin resistance protein [Shewanella piezotolerans WP3]
 gi|212555662|gb|ACJ28116.1| Acriflavin resistance protein [Shewanella piezotolerans WP3]
          Length = 1034

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/534 (11%), Positives = 151/534 (28%), Gaps = 38/534 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVVAIVLSLLLCVFGAVS-----FSKLAVREMPDVESPVVT---------VMTTYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            V   +  
Sbjct: 55  SATIMESQITTALEDELTGISGVDQIESVTRNGMSRITVTFFLGWDLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +    ++          V    +    I    + +    R   D+  +     
Sbjct: 115 AQRRLPDEANDPIVSKDNGTGEPSVYVNLSSS--IMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + +     L                    N  
Sbjct: 173 SVDISGGLYKVMYVQLKPELMAGRQVTASDIIKVLNLE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      +   TA    K       +          +     ++           
Sbjct: 214 TPGGEVRNDTTVMAVRTARLYQKPEDFDYLVLRRASDGTPVYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         IV+  +      S   
Sbjct: 274 KSDGVVNISLGVVPQSDANPLEVAQDVHKEVDRIQQFLPEGTKLIVDYDSTVFIDRSIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A+ A LV++VL++ +   +  L+   ++ +++I      + LG ++ L ++  ++
Sbjct: 334 VFNTLAVTALLVIMVLYIFIGQARATLIPAVTVPVSLISAFIAANSLGFSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGEPPILAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           G        F++ + +S++ S   A+++   +   +++     S     +   F
Sbjct: 454 GMVGLLFTEFSVMLAVSVIFSSIVALTLTPVLGSKLLKANVKPSRFNMWVEAKF 507



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            PV L  V       +  + +F++       L  +     + +   + +     +I + +
Sbjct: 252 TPVYLKDVADVFIGAENENSTFKSDGVVNISLGVVPQSDANPLEVAQDVHKEVDRIQQFL 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIYIWIRFKWYFALGAITTLILDIT 705
           P  T    +          I +    + + + + +++      +    L    T+ + + 
Sbjct: 312 PEGTKLIVDYDSTVFIDRSIDEVFNTLAVTALLVIMVLYIFIGQARATLIPAVTVPVSLI 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G   NL  + A++  IG  V+D +VV + +                  K  
Sbjct: 372 SAFIAANSLGFSINLLTLMALILSIGLVVDDAIVVVENI---FHHIEKGEPPILAAYKGT 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     V T+    +  LP++   G V      F++ +A  ++ ++  ++ +   +   
Sbjct: 429 REVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVIFSSIVALTLTPVLGSK 488

Query: 823 IYDWRAKNAR 832
           +     K +R
Sbjct: 489 LLKANVKPSR 498



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        L G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLYLTGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    ++    I  +    L   + T+    I  +P+ +    G     +    + FG+
Sbjct: 931  QLRDKGLAIEQAIIDASARRLRPILMTAFTTLIGAIPLIMSTGAGSESRIAVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYD 825
              A   ++ I   +   I  
Sbjct: 991  AFATFVTLLIIPAMYRLISG 1010


>gi|217972373|ref|YP_002357124.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Shewanella baltica OS223]
 gi|217497508|gb|ACK45701.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS223]
          Length = 1052

 Score =  156 bits (394), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/694 (10%), Positives = 183/694 (26%), Gaps = 49/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFFITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + A +       N        G +    +D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGLSPADIIAAVREQNQQAAAGSLGAQPSGSADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I                 I          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIIKVGQNGEVNRLKDVARIELGATSYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L  G        +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAKMAELSKGFPEGLTYEIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S+ G+
Sbjct: 340 AVMKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIAAGLSPVAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRA---------------MMIFIIRYKKMKS 522
               G   + FA+T+ +S  IS   ++++  A               +   + +      
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKSHDAPKDGLTRLMDKLLGGWL 519

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                            +     RF G+   +   + ++  +       G       Q  
Sbjct: 520 FTPFNRLFSRASDGYGWLVRKVIRFGGIIGLVYLGMVALTGVQFAHTPTGYVPGQDKQYL 579

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D + +      ++       N  G  + +                  +     
Sbjct: 580 VAFAQLPDAASLERTDTVIKKMSEIALNHPGVAHSIAFPGLSINGFTNSPNSGVVFVALD 639

Query: 643 TEIVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
              +  S   +   +  ++++E   I+   + + 
Sbjct: 640 DFELRKSPELSANAIAGQLNKEFAGIQDAFIAIF 673



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/383 (9%), Positives = 107/383 (27%), Gaps = 9/383 (2%)

Query: 454  MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
             G   A+  IF       + T+  F                 +   +         +   
Sbjct: 663  AGIQDAFIAIFPPPPVQGLGTIGGFRLQIQDRANLGYEALYQVTQQVMYKAWADPQLAGI 722

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
               Y+         + R       +++  +         S   +  +             
Sbjct: 723  FSSYQVNVPQLELDIDRTKAKQQAVSLDQIFQTLQTYMGSTYVNDFNRFGRTYQVNMQAD 782

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            +        +   +  +L+     L S      S                  G   A   
Sbjct: 783  EAFRQSPQQISQLKVPNLNGDMIPLGSFINVSQSSGPDRVMHYNGFTTAEINGGPAAGVS 842

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELI--RKGIVGVIISAIAMLIYIWIRFK-W 690
              +        +        T        ++++    G++   +  + + + +  +++  
Sbjct: 843  TGQAQAAIEKILAETLPNGMTYEWTELTYQQILAGNTGLLVFPLVILLVFMVLAAQYESL 902

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + + +   L    ++G + N+     ++ L+G +  + +++ +  ++    
Sbjct: 903  SLPLAIILIIPMTLLSALSGVLIYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKE---K 959

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                ++  D I ++    L   + TS+A  + V+PM      G  +  +  + +  G++ 
Sbjct: 960  QDHGMAPMDAILEAARLRLRPILMTSIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIG 1019

Query: 808  AASSSIFIAAPILLFIYDWRAKN 830
                 + +       +    +K 
Sbjct: 1020 VTVFGLILTPLFYYALAKRGSKK 1042



 Score = 43.1 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 17/233 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     I      G     +    +   +       E +  +I 
Sbjct: 268 RIELGATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAKMAELSKGFPEGLTYEIV 327

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
               +    + E V   +   ++   +V V+               W  ++  +  + + 
Sbjct: 328 YDPTVFVRGSIEAVMKTLLEAVLLVVLVVVLFLQT-----------WRASIIPLVAVPVS 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K
Sbjct: 377 LVGTFAFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAA---GLSPVAATQK 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
           ++ E  G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 434 AMKEVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|308513243|ref|YP_003933646.1| export membrane protein SecF [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|307346949|gb|ADN43933.1| export membrane protein SecF [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 318

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/315 (25%), Positives = 148/315 (46%), Gaps = 15/315 (4%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                   + F + R+  +  S L  +  I      G+   I FKGG  + +     VDL
Sbjct: 1   MTQNIPFKMSFYKQRYKFIAFSSLLLLIGIISAIVFGMKLDIQFKGGSIVKMSFAGDVDL 60

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK-------ITE 644
           S     + +     +S Q     ++   +       +VA  + L+  ++           
Sbjct: 61  SKAEEVVSNAIKKPVSMQIISSLESSSEKKVRSLVINVADNQALKTEEQMAMTEALQKAF 120

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY----FALGAITTL 700
                T     +V P I +  +  G++ V++S+I +++Y+WIRF+        + A+  L
Sbjct: 121 PSNNITWSEASLVNPFIGQRTLTNGLLAVLVSSILIVLYVWIRFRTISGASAGIFALIAL 180

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           I D+      F +F    N T +A VL+++G+SVND +V++DR+R+N +LY   ++  DL
Sbjct: 181 IHDVLIAFFAFVVFRFSLNETVIAVVLSILGWSVNDTIVIFDRIRENERLYGGKMTLPDL 240

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG----GSVIGSFAIPMAFGIVVAASSSIFIA 816
           +D SIN++  R++ TS+ +F+++L   V+      S I  FA+PM  G+++ + SSI +A
Sbjct: 241 VDMSINQSFTRTLNTSICSFVAILMAFVFAKVYNLSSIVEFALPMMVGVIIGSYSSICLA 300

Query: 817 APILLFIYDWRAKNA 831
            P+         +  
Sbjct: 301 TPLWTMFKTRGGRTG 315


>gi|226939016|ref|YP_002794087.1| Acriflavin resistance protein [Laribacter hongkongensis HLHK9]
 gi|226713940|gb|ACO73078.1| Acriflavin resistance protein [Laribacter hongkongensis HLHK9]
          Length = 1013

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/656 (12%), Positives = 203/656 (30%), Gaps = 47/656 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM-PKNRISLGLDLRGGSHLVLEV 60
           R +    +L +++   G++        +  +DR+P+   P   +S  LD           
Sbjct: 9   RRHVLAFMLSAVLVLFGIVA-----FNRIGIDRYPNIDQPVISVSTALD----------G 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + ++  +    +   + +        + R  ++ + ++F   +  +   ++V + + 
Sbjct: 54  ATPEVMDSSVTQVIESAVNSVPGIDYIESTSRAGRSTVRINFKLDKNVDVAFNEVQVKVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  D    ++  T      I+      D       +           Q+   +  
Sbjct: 114 QAQRRLPDDADAPVVSKTDANASPIIWLGLTGD---RTPKQLYDYANTVIKKQLETLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            + +   R    +  + DP RL     T   +S      +    G               
Sbjct: 171 GEIMVRGRGERVIRVDLDPVRLAGFGLTPTDVSDAIKREHRQAPGGTLKQ---------- 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N +  T   + D+     G           +    + V   
Sbjct: 221 ----------GDREYQINLNLEYGTVDALQDLVVGFKGQTAVRLADVAQVVDGESEVRSI 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                           +  +     +     +   +     P     V   +    L   
Sbjct: 271 TRFNGEPGINIGVVRVSGSNMVSVADNVLAKVRDSVLPALPPGMTLTVASNDSTFVLEMV 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  +        L  +V+++ +   +  L+   +I ++++  +AL+  LG T    ++  
Sbjct: 331 AALEDHLLEGTLLAALVVWLFLRNLRSTLIVSLAIPVSLLGAVALMYFLGYTFNTITLLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           ++L IG+ VD  I+V E I     + ++  +  ++D      ++ I  +     I   V+
Sbjct: 391 LLLLIGVVVDDAIVVIENIWRLREEGETDPMQAAIDGSQQVVFAVIAATLSLVAIFAPVV 450

Query: 478 FFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFF 532
           F  G  G     FA+ +   +L+S+F ++++   +       +         +       
Sbjct: 451 FLSGLIGRLFNSFAVVVASGVLVSLFVSVTLTPMLASRWLKTMPKHGPLYRRMESGFIAL 510

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                  + +  A    V  + L  + +  L+FT   +  +  +   +  V    P+  S
Sbjct: 511 ENGYRRLLAWTLAHRLWVMGAALVCVAASALIFTSMKSEFLPEEDEARFLVSLKTPIGAS 570

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V  ++ ++  + DI  +  +      +   +  G     T ++ +  +        
Sbjct: 571 VDYTDRKTRAVEDILNRYPEVSNTLAIVGGFGGGQVNQTTLIVRLKPRSERAASQG 626



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 67/204 (32%), Gaps = 9/204 (4%)

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF---KW 690
            + E V         +           +        G +    +  ++L+Y+ +      +
Sbjct: 811  LAEAVALTEATAAEVLAPNIRIEWLGEARELDRTAGQLVFTFAFASLLLYMVLASQFNSF 870

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                  +    L +   L    L G   N+ +V  ++ LIG    + +++ D   ++   
Sbjct: 871  LQPALVMLAEPLAVVGGLLLLWLTGQSLNVYSVIGLILLIGLVAKNAILLIDVTNQSRAA 930

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP---MAVWGGSVIGSFAIPMAFGIVV 807
                      + +S    L   + TS+   +++LP       G    G  AI +  G+V 
Sbjct: 931  GRR---VDSALAESCPRRLRPVLMTSLTVVLAMLPAAMGFGAGAETNGPLAIAVIGGMVS 987

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            +   ++ +       +  WR +  
Sbjct: 988  STLLTLVVIPAAYSLLEGWREQRR 1011



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 63/164 (38%), Gaps = 13/164 (7%)

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A L+           L     + + +   +      G  FN   + A+L LIG  V+D
Sbjct: 342 LLAALVVWLFLRNLRSTLIVSLAIPVSLLGAVALMYFLGYTFNTITLLALLLLIGVVVDD 401

Query: 737 KVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +VV +   R+R+       +   +  ID S        V  +  + +++    V+   +
Sbjct: 402 AIVVIENIWRLREE----GETDPMQAAIDGSQQVVFA--VIAATLSLVAIFAPVVFLSGL 455

Query: 794 I----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           I     SFA+ +A G++V+   S+ +   +         K+  +
Sbjct: 456 IGRLFNSFAVVVASGVLVSLFVSVTLTPMLASRWLKTMPKHGPL 499


>gi|314966626|gb|EFT10725.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL082PA2]
 gi|314981355|gb|EFT25449.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL110PA3]
 gi|315092021|gb|EFT63997.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL110PA4]
 gi|315092852|gb|EFT64828.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL060PA1]
 gi|315103628|gb|EFT75604.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL050PA2]
 gi|327327450|gb|EGE69226.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL103PA1]
          Length = 553

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 121/540 (22%), Positives = 209/540 (38%), Gaps = 55/540 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +LVI+  M   +G++                +  P     LGLDLRGG+ + L    +D
Sbjct: 3   IFLVIIIVMYVLMGVM---------------RTWSP----KLGLDLRGGTSVTLTAKTED 43

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTL 117
                   L+     +   +   G+G  S++ + ++ I +S  +       E +     L
Sbjct: 44  GKAPSATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQL 103

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN--NIDQVISHAIEQSMEIIRQRIDQIG 175
             + V ++  V  K            S + +            A   S         Q  
Sbjct: 104 GFRMVYAEEPVSQKSPTPGKAKPSAPSALPTVELSASASATPDASASSKGGTTSSASQYN 163

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +               P  +D                       S            D
Sbjct: 164 EKDPQSAAKMVKAAEEWKPTPEDQKAFEDY------------KCAKSVDSPDDKSLVTCD 211

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +     +   V I+G  +  A +         VV++ F+ +G   F + T     K   
Sbjct: 212 RERTMKYLLSPVAITGTQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSP 271

Query: 296 VVLDGRVLTAPVINQAIP-----------SGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
                 VL   VI+                G+AQISG+FT ++A  LA +L+ G+LP+  
Sbjct: 272 QNQFAVVLDGKVISSPQLNGDTGASCPINGGEAQISGHFTQDSAADLANVLKYGALPLSF 331

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
           +I    N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A 
Sbjct: 332 DISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAA 391

Query: 405 LSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           + LL    G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A 
Sbjct: 392 MVLLGEAVGFTLSLAGIAGAIVAIGVTTDSFIVYFERIRDEIREGRTLRTALQTGWAKAR 451

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            TI  ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R K  
Sbjct: 452 GTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTKFW 511



 Score = 94.0 bits (231), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 330 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 388

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 389 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTTDSFIVYFERIRDEIRE---GRTLRTALQT 445

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 446 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 505

Query: 824 YDWR 827
              +
Sbjct: 506 GRTK 509


>gi|238063874|ref|ZP_04608583.1| preprotein translocase subunit secF [Micromonospora sp. ATCC 39149]
 gi|237885685|gb|EEP74513.1| preprotein translocase subunit secF [Micromonospora sp. ATCC 39149]
          Length = 395

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 118/279 (42%), Gaps = 9/279 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    G++    + ++      G   GI+F GG    V A+        R+   +L  
Sbjct: 21  GRRKLWFGVAGALILIAVLSFALRGFTLGIEFAGGNSFQVPASVGTLDDAERTVDAALAS 80

Query: 604 GDISFQNFDGE--KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                +    +                +   +      +            +   V    
Sbjct: 81  TAAGAEVVTAQKVGGTGGDFYEMRTSQLTAEQANAAKTEMARAFGIQPDQISGNQVSEAW 140

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             ++  + ++G++I    + +Y+ +RF+W  A+ A+++L +++  T G ++L G E   +
Sbjct: 141 GSQVTSRALLGLVIFIALVTVYLVLRFEWRMAVAAVSSLFMNLILTAGIYSLVGFEVTPS 200

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSMAA 779
            +   LT++G+++ D VVV+D++++N +  T   + ++ +  + +IN++L RS+ TS+ A
Sbjct: 201 TIIGFLTILGFALYDVVVVFDKVQENTRGITANNNQTYGEAANLAINQSLMRSLNTSVVA 260

Query: 780 FISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSI 813
            + V  +        G   +    + +  G+ VA  +SI
Sbjct: 261 LLPVGGLLFIGAGLLGAGTLKDLGLVLFVGMAVAFLTSI 299


>gi|167587589|ref|ZP_02379977.1| acriflavin resistance protein [Burkholderia ubonensis Bu]
          Length = 868

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/542 (13%), Positives = 149/542 (27%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL FA     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFALDLPLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAVTSKTLPLTQVQDLADTRLAMKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYQDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++        L+          +          +    
Sbjct: 275 VDAQPAIILNVQRQPGANVIQTVDAIKAQLPKLQESLPAALDVRIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELMLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I        S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEDGDSPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHSPPPESHRFEARVHVAIDRVIA 514

Query: 540 IQ 541
             
Sbjct: 515 RY 516



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 80/202 (39%), Gaps = 7/202 (3%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             +    + +     ++    K+ E +P +           + R  +R     ++++   
Sbjct: 285 VQRQPGANVIQTVDAIKAQLPKLQESLPAALDVRIVTDRTTMIRAAVRDVQFELMLAVAL 344

Query: 680 MLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           +++ +++     +A +    ++ L +  TL    L G   N  ++ A+    G+ V+D +
Sbjct: 345 VVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIG 795
           V+ + +    +      S  +   K   +     +  +++    ++P+   G   G +  
Sbjct: 405 VMIENI---ARYVEDGDSPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFH 461

Query: 796 SFAIPMAFGIVVAASSSIFIAA 817
            FAI +A  IV++A  S+ +  
Sbjct: 462 EFAITLAVTIVISAIVSLTLVP 483


>gi|291295882|ref|YP_003507280.1| acriflavin resistance protein [Meiothermus ruber DSM 1279]
 gi|290470841|gb|ADD28260.1| acriflavin resistance protein [Meiothermus ruber DSM 1279]
          Length = 1110

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/550 (10%), Positives = 144/550 (26%), Gaps = 43/550 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +   ++  +   GL+      +        P                         
Sbjct: 22  RRFVFSTAIFLAMVLFGLISGSRVGVDLLPRFEIPVVAVTTA--------------YPGA 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S L           +  +++ +SF   +    +A  V+  +  
Sbjct: 68  GPEEVEQQISRPIEDAVSTLAGLDQVASISGEGFSQVVISFEFGQDINRVATDVSQRVAA 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  + +  ++         I+    + D       E +         ++ +     
Sbjct: 128 VRGQLPREAEAPVVQRFDPAASPILFIALSADG--RDLREVAKYANDVLKPRLQLVSGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+    DP ++     + A++         +        +          
Sbjct: 186 DVQVQGAPDRQIQVLLDPYKVAAYNLSPAQVVAAIQASALAIPAGTQSDQ---------- 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G  L     N           +     G +         +    A      
Sbjct: 236 ---------GQRLLFTLRNTPTTPEDVGRILVDPARGLQV---SDLGVVRDAQAEPTRLT 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           +     +       +  A         +          + + 
Sbjct: 284 RLNGQPVIPLAVRKTPDSNAVAVAQGIKR--TLQEARLPQGYQARIVGDTTTFIENTVND 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +VA +V  +  + +           +I + +   L +  LLG T  + S+  ++
Sbjct: 342 TFREVLLVAAIVSFITLIFLGKLNSVFSVVLAIPITMSGALIVFGLLGFTFNIISLLALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G+ VD +I+++E I    R       ++  G +   S +  + ++ L   + + F  
Sbjct: 402 VAVGIVVDDSIVLSENIERYRRMGYDNLQAVLKGSTEVLSAVSAATLSLLAVFLPISFLP 461

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F I +  +I +S   A+  +   + +    +      +             
Sbjct: 462 GIIGEFFRQFGIVLAAAIAVSWLEALFFLTVRLAYFPDPEPPTWRQLGQRLLGLGQDLRW 521

Query: 539 AIQFMRARFW 548
            ++    R  
Sbjct: 522 GLRLHIYRQP 531



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/220 (13%), Positives = 80/220 (36%), Gaps = 11/220 (5%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS-RELIRKGIVGVIISA 677
            +     P   +   ++  +V++++ +    +     E  G      +L R   +   ++ 
Sbjct: 883  INANRAPDSEIGTFQLANLVQQELEKAGVFTDGVRLETQGSTAFVGDLARSAPIAFGLAL 942

Query: 678  IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +   + I  +F  + + +  +  + L +     F   F    ++ +V  V+ LIG    +
Sbjct: 943  LLNFLVISSQFNTFRYPVYLLLPVPLALVGAFWFLYFFRSGLDVVSVLGVVILIGLVTKN 1002

Query: 737  KVVVYDR-MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
             +++ D  +R+         S  D + ++    L   + T++   +  +P+      G  
Sbjct: 1003 AILLLDFAVRE-----ARERSLYDALVEAGRLRLRPILMTTLTVLMISIPLIAAAGEGSE 1057

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                  I +  G+ V+   ++++           R +  R
Sbjct: 1058 FRRPLGIIILGGVSVSMLLTLYVVPAAFYLFERRRYEKLR 1097



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 61/149 (40%), Gaps = 8/149 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++++AI   I +    K       +  + + ++  L  F L G  FN+ ++ A++  +G 
Sbjct: 347 LLVAAIVSFITLIFLGKLNSVFSVVLAIPITMSGALIVFGLLGFTFNIISLLALIVAVGI 406

Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
            V+D +V+     +N++ Y          + K   E L      +++     LP++    
Sbjct: 407 VVDDSIVLS----ENIERYRRMGYDNLQAVLKGSTEVLSAVSAATLSLLAVFLPISFLPG 462

Query: 791 --GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G     F I +A  I V+   ++F   
Sbjct: 463 IIGEFFRQFGIVLAAAIAVSWLEALFFLT 491


>gi|50122108|ref|YP_051275.1| multidrug efflux system subunit MdtC [Pectobacterium atrosepticum
           SCRI1043]
 gi|60389970|sp|Q6D2B0|MDTC_ERWCT RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|49612634|emb|CAG76084.1| multidrug transporter [Pectobacterium atrosepticum SCRI1043]
          Length = 1026

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/584 (10%), Positives = 158/584 (27%), Gaps = 30/584 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +     +        +      ++ L F   R     A 
Sbjct: 47  VSASLAGASPETMASAVATPLERALGRIAGVSEMTSTSSLGSTRVILVFNLDRDINGAAR 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    + L                 + V+    +        +       Q   +
Sbjct: 107 DVQAAINAAQNLLPSGMSSRPTYRKVNPSDAPVMI-LTLTSDTYSQGQLYDFASTQLSQK 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I   E           L  +    +P  L     +  ++       N  +          
Sbjct: 166 ISQMEGVGDVSIGGSSLPAVRVALNPVALFNQGISLDEVRQAIAQANVRQPLGNVENSQK 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           R        ++                           +                 +   
Sbjct: 226 RWQIQTNDELKTA--------------------DAYAPLIIHYSNGAAVRLSDVATVEDS 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +    +  +  +      +       +   T++        LRA         V +    
Sbjct: 266 VQNSRNAGMANSKPAILVMIRRAPDANIITTVDNIRAAMPELRASLPAEIQLDVAQDRSP 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S +  + +  I   LV++V+F+ +   +   +   ++ +++I T A + L G +L 
Sbjct: 326 TIRASLAEVEQSLIIAVALVILVVFLFLRSWRATAIPALAVPVSLIGTFAAMYLCGFSLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I+V E I            +   G      T+   +++ +  
Sbjct: 386 NLSLMALTIATGFVVDDAIVVLENISRHIEAGMKPLQASLQGVREVGFTVLSMSLSLVAV 445

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L    G      R FA+T+ ++I+IS+  ++++   +   ++R    +S        
Sbjct: 446 FLPLLLMDGLPGRLFREFAVTLSVAIMISLLISLTLTPMLCARLLRAVPKRSQPRTQGFN 505

Query: 531 FFLIPDC------IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             L+         +      AR+  + +    ++     +      +     G +   + 
Sbjct: 506 RVLLAMQQGYGRSLKWVLNHARWVLLLLLGTIALNVWLYISIPKTFFPEQDTGRMMGFIQ 565

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           A++ +    +   L++      S    D    F    +   G  
Sbjct: 566 ADQSISFQAMTVKLQNFMTIVSSDPAVDNVNGFTGGSRTNSGSM 609



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 72/218 (33%), Gaps = 6/218 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            ++R             +   + +    +     +   +   P I   L       +I  
Sbjct: 283 VMIRRAPDANIITTVDNIRAAMPELRASLPAEIQLDVAQDRSPTIRASLAEVEQSLIIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           A+ +L+       W         + + +  T     L G   N  ++ A+    G+ V+D
Sbjct: 343 ALVILVVFLFLRSWRATAIPALAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
            +VV + +    +     +       + + E     +  S++     LP+ +     G +
Sbjct: 403 AIVVLENI---SRHIEAGMKPLQASLQGVREVGFTVLSMSLSLVAVFLPLLLMDGLPGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              FA+ ++  I+++   S+ +   +   +     K +
Sbjct: 460 FREFAVTLSVAIMISLLISLTLTPMLCARLLRAVPKRS 497



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 89/217 (41%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +    +     +++ +T +   S+++       +  ++     ++ ++ + I 
Sbjct: 803  TISFNLPEGTDLSSATAAIERTMTSLGVPSSVRGQFSGTAQAFQQSQSSQLLLILAAIIT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L     FG  F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALEWFGAPFSLVALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D     +   +  +S +D I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVD--FALVAQRSGKLSAQDAIFQACLLRFRPIMMTTLAALFGALPLVLTSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G++++   +++    + LF    R    +
Sbjct: 981  PLGITIVGGLLMSQVLTLYTTPVVYLFFDKLRTIRRK 1017


>gi|316932940|ref|YP_004107922.1| acriflavin resistance protein [Rhodopseudomonas palustris DX-1]
 gi|315600654|gb|ADU43189.1| acriflavin resistance protein [Rhodopseudomonas palustris DX-1]
          Length = 1034

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/644 (11%), Positives = 181/644 (28%), Gaps = 41/644 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  IG   A+        + ++P                         
Sbjct: 9   KRPVLSLVVSMLILLIGFRAAM-----TLPIRQYPKLSNTVVT---------ITTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +  +       +  Q Q+ IT+    +        +V   +  
Sbjct: 55  SPDLMQGFITTPLEQAVASAEGVDYITSASTQGQSLITVYVKLNFDPNQALTEVLAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   +  +    ++V +T +  +++    + +++   AI  S  + R     +   +   
Sbjct: 115 VKYLIPKEANDPVIVKSTGQTTAVMYIGFSSNELSGSAI--SDYLTRVVQPVLSTVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP R+     +   +S      N               +     
Sbjct: 173 SADILGGQTFAMRIWLDPLRMAGRGVSANDISAAIQANNFQAAAGQTKGYLTVSNITTNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                    +       +                 +           
Sbjct: 233 DL--------------------QNVDQFKRMIVKAKDGGFVRMEDVATVELAAQSTDSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +             Q +    +     L   +     P     V   +      S   
Sbjct: 273 AFSGERAIFIGVQATPQGNPLNIVTGVRALFPEIERNLPPSMHMKVAYDSTKFIRSSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T     G+V++V+F+ +   +  ++   +I L++I     +  +G ++ L ++  +V
Sbjct: 333 VEKTLIEAVGIVIVVIFLFLASFRSVIIPVVTIPLSLIGVCTAMLAMGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +  +G       +    IT       + F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHLEEGKSPVQASLIGAREIVGPVISMTITLAAVYAPIGFLG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
              G   R FA T+  ++++S   A+++   M    +              S F  +   
Sbjct: 453 GLTGALFREFAFTLAGAVIVSGIIALTLSPMMCSVLLKHQDSQGWFARKVDSVFSSVTRW 512

Query: 538 IAIQFMRARFWGVGISIL-FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              Q  R+  +     +    I  +           +  +    +     +    + +  
Sbjct: 513 YGRQLDRSLDYRPITGMFAVVILGLVGFMYMNTAKELAPEEDQGIVFAVTKAPKYANIDY 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                +  D ++ +F       +       ++     +L+   +
Sbjct: 573 ANYYGEKLDKAYASFPETDLRFILNGTSGPNNGIAGMLLKPWDE 616



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 70/188 (37%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +   +++ +   + +    ++         E+ +  I  V I  + + +++     +  
Sbjct: 301 ALFPEIERNLPPSMHMKVAYDSTKFIRSSIDEVEKTLIEAVGIVIVVIFLFLA---SFRS 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +          G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 358 VIIPVVTIPLSLIGVCTAMLAMGFSINLLTLLAMVLAIGLVVDDAIVVVENIH---RHLE 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              S          E +G  +  ++       P+   G   G++   FA  +A  ++V+ 
Sbjct: 415 EGKSPVQASLIGAREIVGPVISMTITLAAVYAPIGFLGGLTGALFREFAFTLAGAVIVSG 474

Query: 810 SSSIFIAA 817
             ++ ++ 
Sbjct: 475 IIALTLSP 482



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 61/155 (39%), Gaps = 6/155 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + T+ + I   L          N+     +LTL+G 
Sbjct: 852  GFALIIIFLVLAAQFESLRDPLVIMITVPMAICGALIPLFFGAATINIYTQVGLLTLVGL 911

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-VWGG 791
                 +++ +  R+       ++  R  I++S    L   + T+ A    +LP+    G 
Sbjct: 912  ISKHGILMVEFARE--LQIKEALDKRTAIEQSARVRLRPILMTTAAMVTGLLPLLTASGA 969

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIY 824
                 F+I +    G+++    ++F+   + + I 
Sbjct: 970  GAASRFSIGLVVVSGMMIGTLFTLFVLPAVYVAIG 1004


>gi|168236289|ref|ZP_02661347.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1) and Heavy
           Metal Efflux (HME) families, permease protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194735045|ref|YP_002115218.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|226700685|sp|B4TNI6|MDTB_SALSV RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|194710547|gb|ACF89768.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290479|gb|EDY29834.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1) and Heavy
           Metal Efflux (HME) families, permease protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 1040

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 54/527 (10%), Positives = 142/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADDYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                 N      +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPANVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|50083998|ref|YP_045508.1| nodulation protein precursor [Acinetobacter sp. ADP1]
 gi|49529974|emb|CAG67686.1| nodulation protein precursor [Acinetobacter sp. ADP1]
          Length = 1033

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/564 (10%), Positives = 154/564 (27%), Gaps = 39/564 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP       +          +      
Sbjct: 9   KYPVFTIMMMFCLMVLGLAS-----WQRMSVEEFPDVDFPFVV---------IYTNYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +  + I   F         A  V   +  
Sbjct: 55  SPEAVESEITKKLEDQINTISGLKQITSQSSEGLSMIVAEFNLDVASSVAAQDVRDKIAV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +    + +  ++        +I+      +       + S  I ++ + Q+  +    
Sbjct: 115 AKANFRDEIEDPVVERYDPASSAIL--SVVFETNQMSLRDFSSYIDQRILPQLRTTPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+     P +L+       ++       N    G                
Sbjct: 173 TVNLLGEAKRQIRIIIHPQKLQSYGIGIDQVINTLKNENVEIPGGTLKQP---------- 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                        D+          +     ++    A +  G 
Sbjct: 223 ----------DSELVIEIQSKVIHPYGFGDLVIANKNGVPIYLKQVADVQDTQAELETGA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L             +  +    ++    +   ++          V          S   
Sbjct: 273 FLNGKTAVAVDILRSSDANVIEVVDNTYKVLDKIKQQLPQGASLHVVVDTSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VARTIIEGAALAVLIVLLFLGSFRSTVITGLTLPIALLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LCIGLLIDDAIVVRENIVRHADMGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    F +T+  ++LISMF + ++   +       K  K          ++     
Sbjct: 453 GIIGRFFFQFGVTVSTAVLISMFVSFTLDPMLSAHWQERKTNKPPSRIKRFFNWISQKLD 512

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
            +  +  R   + +   F    I 
Sbjct: 513 HLSHVYERLLKLALCFRFITLLIA 536



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 75/218 (34%), Gaps = 8/218 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +                +++ K   ++   +++         I   +       +  +
Sbjct: 282 VDILRSSDANVIEVVDNTYKVLDKIKQQLPQGASLHVVVDTSKGIRASIKDVARTIIEGA 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           A+A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG  ++D
Sbjct: 342 ALAVLIVLLFLGSFRSTVITGLTLPIALLGTLTFIWAFGFSINMMTLLALSLCIGLLIDD 401

Query: 737 KVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+ +                 E     + T++      LP+A  GG +  
Sbjct: 402 AIVV----RENIVRHADMGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGIIGR 457

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F + ++  ++++   S  +   +     + +   
Sbjct: 458 FFFQFGVTVSTAVLISMFVSFTLDPMLSAHWQERKTNK 495



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 69/188 (36%), Gaps = 10/188 (5%)

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAITTLIL 702
                           + ++       +  I+   + IYI +      +      + +L L
Sbjct: 837  NFKLPAGYSFDTQGANADMAESAGYALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPL 896

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        LF    NL ++  ++ L+G    + +++ D ++   K      +  D I 
Sbjct: 897  SLIGVFLALFLFNSTMNLFSIIGIIMLMGLVTKNAILLIDFIK---KAMDRGENRYDAII 953

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + T+ A  + ++P+A+    GG      A  +  G++ +   ++ +   I
Sbjct: 954  QAGKTRLRPILMTTSAMVMGMVPLALGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVI 1013

Query: 820  LLFIYDWR 827
              ++ D +
Sbjct: 1014 FTYLDDLK 1021


>gi|293394946|ref|ZP_06639235.1| multidrug RND efflux transporter [Serratia odorifera DSM 4582]
 gi|291422536|gb|EFE95776.1| multidrug RND efflux transporter [Serratia odorifera DSM 4582]
          Length = 1039

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/550 (10%), Positives = 146/550 (26%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMLAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F      +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLELPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPYPPIYSKVNPADPPIMT-LAVTSSAMPMTQVEDMVETRVAQKISQVNGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + + + +      +  +       N +                    
Sbjct: 184 VTLSGGQRPAVRVKLNAAAVAAYGLDSETVRSAISNANVNSAKGSLDGPT---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V +S      +  ++          +                 I +          
Sbjct: 234 --RSVTLSANDQMKSAEDYRQ--------LIIAYQNGAAIRLQDIATIEQGAENTRLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T +    +  +L           V          S +  
Sbjct: 284 ANKQQAIVLNIQRQPGVNVIATADGIRDMLPVLVKSLPKSVDVKVLTDRTTTIRASVNDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L+++ T A +  L  ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYVFLRNVPATIIPSVAVPLSLVGTFAAMYFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLVAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ ++ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRRQNRFSRASERFFDRVIA 523

Query: 540 IQFMRARFWG 549
              +  +   
Sbjct: 524 RYAVWLKVVL 533



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 58/148 (39%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+IY+++R      +     + L +  T           N   + A+    G+
Sbjct: 349 LAIALVVMVIYVFLR-NVPATIIPSVAVPLSLVGTFAAMYFLDFSINNLTLMALTIATGF 407

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +VV + +    +         D   K   E     +  + +    ++P+   G  
Sbjct: 408 VVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLVAVLIPLLFMGDI 464

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FA+ +A  I+++A  S+ +  
Sbjct: 465 VGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|189468205|ref|ZP_03016990.1| hypothetical protein BACINT_04601 [Bacteroides intestinalis DSM
           17393]
 gi|189436469|gb|EDV05454.1| hypothetical protein BACINT_04601 [Bacteroides intestinalis DSM
           17393]
          Length = 1043

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/582 (11%), Positives = 159/582 (27%), Gaps = 43/582 (7%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPIDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQELNGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   L+   S+L  +  +N +    +    
Sbjct: 78  YMESNSSNSGGFSATVTFDISADPDLAAVEIQNRLKLAESRLPAEVVQNGISVEKQAASQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++             I  S       +D +       +          +     P +L  
Sbjct: 138 LMTICLRSSDPKFDEIYLSNFATLNVLDLLRRIPGVGRVSNIGSRYYAMQIWVQPDKLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T A +       N      + G + +   D                +   T      
Sbjct: 198 FGLTVADLQNALKDQNRESAAGVLGQQPVTGLDIT--------------IPITTQGRLST 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 I    +       +                +    
Sbjct: 244 VGQFEEIVIRANADGSIIRLRDVARISLEASSYNTESSINGENAAVLGIYMLPGANAMEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            E        +           +          S      T      LV+IV+F+ +   
Sbjct: 304 AENVKKAMDEISNNFPDGLSYEIPFDMTTYISESIHEVYKTLFEALILVIIVVFLSLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   ++ +++I T   + + G +L + ++ G+VL IG+ VD  I+V E +     +
Sbjct: 364 RATLIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMHE 423

Query: 445 NQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
            +   + +           I  +++      V + F G   G   R F +T+ +S+L+S 
Sbjct: 424 EKLPPYEATKKAMEGLTGAIIATSLVLAAVFVPVSFLGGITGQLYRQFTVTIVVSVLLST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKS-------IDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
             A+++   M   I++ +  K        I+             I+      R       
Sbjct: 484 VVALTLSPVMCSLILKPESHKRKNIVFRYINYALNMGNRKYVRQISRVIGNPRRVLSAFG 543

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           ++     +           ++ +G  ++ +       L   R
Sbjct: 544 VILVAILLINRLIPTSFLPVEDQGYFKVELELPEGATLERTR 585



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/200 (15%), Positives = 69/200 (34%), Gaps = 3/200 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V          +            L        +++     ++    +I+   P     
Sbjct: 265 DVARISLEASSYNTESSINGENAAVLGIYMLPGANAMEVAENVKKAMDEISNNFPDGLSY 324

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                      E I +    +  + I ++I +++    W   L  I  + + +  T GF 
Sbjct: 325 EIPFDMTTYISESIHEVYKTLFEALILVIIVVFLSLQSWRATLIPIVAVPISLIGTFGFM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +FG   N+  +  ++  IG  V+D +VV + +     ++   +   +   K++    G 
Sbjct: 385 LIFGFSLNILTLLGLVLAIGIVVDDAIVVVENV--ERIMHEEKLPPYEATKKAMEGLTGA 442

Query: 772 SVYTSMAAFISVLPMAVWGG 791
            + TS+      +P++  GG
Sbjct: 443 IIATSLVLAAVFVPVSFLGG 462



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 58/140 (41%), Gaps = 8/140 (5%)

Query: 689  KWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  + +L I  +   LG +   G+E ++     ++ L+G +  + +++ +  ++ 
Sbjct: 888  SWTVPIAVLLSLPIAALGAYLGVWT-CGLENDVYFQIGLVMLVGLAAKNAILIVEFAKEQ 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +       +       +        + TS+A  + +LPM +    G +   +    + FG
Sbjct: 947  V---DRGANVVKAALHASQLRFRPILMTSLAFILGMLPMVIASGPGSASRQAIGTGVFFG 1003

Query: 805  IVVAASSSIFIAAPILLFIY 824
            +++A +  I +     + IY
Sbjct: 1004 MILAVTVGILLVPFFFVLIY 1023


>gi|168259539|ref|ZP_02681512.1| multidrug resistance protein mdtB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205351038|gb|EDZ37669.1| multidrug resistance protein mdtB [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 1040

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSVVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|160876430|ref|YP_001555746.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           baltica OS195]
 gi|160861952|gb|ABX50486.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS195]
 gi|315268620|gb|ADT95473.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS678]
          Length = 1052

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 74/694 (10%), Positives = 183/694 (26%), Gaps = 49/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFFITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + A +       N        G +    +D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGLSPADIIAAVREQNQQAAAGSLGAQPSGSADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I                 I          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIIKVGQNGEVNRLKDVARIELGATSYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L  G        +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAKMAELSKGFPEGLTYEIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S+ G+
Sbjct: 340 AVMKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIAAGLSPVAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRA---------------MMIFIIRYKKMKS 522
               G   + FA+T+ +S  IS   ++++  A               +   + +      
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKSHDAPKDGLTRLMDKLLGGWL 519

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                            +     RF G+   +   + ++  +       G       Q  
Sbjct: 520 FTPFNRLFSRASDGYGWLVRKVIRFGGIIGLVYLGMVALTGVQFAHTPTGYVPGQDKQYL 579

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D + +      ++       N  G  + +                  +     
Sbjct: 580 VAFAQLPDAASLERTDTVIKKMSEIALNHPGVAHSIAFPGLSINGFTNSPNSGVVFVALD 639

Query: 643 TEIVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
              +  S   +   +  ++++E   I+   + + 
Sbjct: 640 DFELRKSPELSANAIAGQLNKEFAGIQDAFIAIF 673



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/384 (9%), Positives = 108/384 (28%), Gaps = 9/384 (2%)

Query: 454  MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
             G   A+  IF       + T+  F                 +   +         +   
Sbjct: 663  AGIQDAFIAIFPPPPVQGLGTIGGFRLQIQDRANLGYEALYQVTQQVMYKAWADPQLAGI 722

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
               Y+         + R       +++  +         S   +  +             
Sbjct: 723  FSSYQVNVPQLELDIDRTKAKQQAVSLDQIFQTLQTYMGSTYVNDFNRFGRTYQVNMQAD 782

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            +        +   +  +L+     L S      S                  G   A   
Sbjct: 783  EAFRQSPQQISQLKVPNLNGDMIPLGSFINVSQSSGPDRVMHYNGFTTAEINGGPAAGVS 842

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELI--RKGIVGVIISAIAMLIYIWIRFK-W 690
              +        +        T        ++++    G++   +  + + + +  +++  
Sbjct: 843  TGQAQAAIEKILAETLPNGMTYEWTELTYQQILAGNTGLLVFPLVILLVFMVLAAQYESL 902

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + + +   L    ++G + N+     ++ L+G +  + +++ +  ++    
Sbjct: 903  SLPLAIILIIPMTLLSALSGVLIYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKE---K 959

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                ++  D I ++    L   + TS+A  + V+PM      G  +  +  + +  G++ 
Sbjct: 960  QDHGMAPMDAILEAARLRLRPILMTSIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIG 1019

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
                 + +       +    +K A
Sbjct: 1020 VTVFGLILTPLFYYALAKRGSKKA 1043



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 17/233 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     I      G     +    +   +       E +  +I 
Sbjct: 268 RIELGATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAKMAELSKGFPEGLTYEIV 327

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
               +    + E V   +   ++   +V V+               W  ++  +  + + 
Sbjct: 328 YDPTVFVRGSIEAVMKTLLEAVLLVVLVVVLFLQT-----------WRASIIPLVAVPVS 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K
Sbjct: 377 LVGTFAFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAA---GLSPVAATQK 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
           ++ E  G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 434 AMKEVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|332529639|ref|ZP_08405594.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family protein
           [Hylemonella gracilis ATCC 19624]
 gi|332040870|gb|EGI77241.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family protein
           [Hylemonella gracilis ATCC 19624]
          Length = 418

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 48/436 (11%), Positives = 114/436 (26%), Gaps = 28/436 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GL+      L    +  +P   P + +                  
Sbjct: 10  RPIFAGVLSLLMLIAGLVA-----LRGLPISEYPEVAPPSIV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++                +T++F      +     V   +  
Sbjct: 56  PKVIAETVATPLEESINGVEGMLYMGSQATTDGVMTLTVTFKLGTDVDKAQQMVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + ++  + T        ++                   +    D++   E   
Sbjct: 116 AEPRLPEEVRRLGVTTVKSSPDITMVVHLVSPNDRYDINYLRNYAVLNVKDRLARIEGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP ++ Q   + + +       N      + G          Q 
Sbjct: 176 QVQIFGGGDYSMRVWLDPQKIAQRGMSASDVVNAIRGQNVQAAAGVVGASPGLPGVDMQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    I                 +    A      
Sbjct: 236 SINAQGRLQSEE-------------EFGDIIVKTGANGAVTRLRDIARLEMGAADYSLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +              L+          +          S   
Sbjct: 283 LLNNKPAVGMGVFQAPGSNALEISAAVRETMDELQKLMPEGVEYRIAYDPTQFVRASIKS 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++V+ T A+L LLG ++   S+ G+V
Sbjct: 343 VIQTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSVVGTFAVLHLLGFSINALSLFGLV 402

Query: 422 LGIGLAVDSNILVNER 437
           L IG+ VD  I+V E 
Sbjct: 403 LAIGIVVDDAIVVVEN 418


>gi|152971066|ref|YP_001336175.1| multidrug efflux system subunit MdtB [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|166233224|sp|A6TBH4|MDTB_KLEP7 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|150955915|gb|ABR77945.1| multidrug transport protein (RND family) [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 1040

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/586 (9%), Positives = 155/586 (26%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAIPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +       N +                    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAITSANVNSAKGSLDGPA---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                ++ +       G  
Sbjct: 234 ----------RAVTLSANDQMQSAEDYRRLIIAYQNGAPIRLGDVASVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   +       K+ +    +      +I 
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERFFERVIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                         + + +  S  ++ ++    +  G        +
Sbjct: 524 VYGRWLSRVLNHPWLTLGVALSTLALSIILWVFIPKGFFPIQDNGI 569



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----- 666
              +   + +  Q           + +++ + ++           V    +  +      
Sbjct: 283 WANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRD 342

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + I+ + M+IY+++R      +     + L +  T           N   + A+
Sbjct: 343 TQFELMLAIALVVMIIYLFLR-NVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMAL 401

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G+ V+D +VV + +    +             K   E     +  + +    ++P+
Sbjct: 402 TIATGFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPL 458

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G   G +   FA+ +A  I+++A  S+ +  
Sbjct: 459 LFMGDIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|84386743|ref|ZP_00989769.1| putative multidrug resistance protein [Vibrio splendidus 12B01]
 gi|84378549|gb|EAP95406.1| putative multidrug resistance protein [Vibrio splendidus 12B01]
          Length = 1037

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 66/626 (10%), Positives = 171/626 (27%), Gaps = 35/626 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +   P                      E      +   +    ++  S +     
Sbjct: 29  FNKLAVREMPDIESPVV---------SISTRYEGASATIIESQITSNLEDQLSGISGIDE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              + R   ++IT++F            V   +      L  +    ++        + V
Sbjct: 80  IESTTRNGMSRITITFELGYDLNTGVSDVRDAVARAQRSLPDEADDPIVYKNNGSGEASV 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               +  +      + +    R  ID+  +         S  +   +  +  P+++    
Sbjct: 140 YINLSSTE--MDRTQLTDYTERVLIDRFSLISGVSSVDISGGLYKVMYVKLKPAQMAGRG 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            TT+ ++      N    G                     V    I ++  TA    +  
Sbjct: 198 VTTSDITSALNSENIESPGGE-------------------VRNDAIVMSVRTARSYTEAE 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +          +     ++                V        ++  +     +
Sbjct: 239 DFEYLVVKRASDNTPIYLKDVADVYIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVAD 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   ++          V+  +      S S    T  I  GLV++VL++ +   + 
Sbjct: 299 LVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVYSTLFITGGLVILVLYVFIGQARA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ +++I +       G ++ L ++  ++L IGL VD  I+V E I     + +
Sbjct: 359 TLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENIFHHIERGE 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTA 503
           S   +   G       +  + +  ++  + + F  G        F++ + +S++ S   A
Sbjct: 419 SPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSVVA 478

Query: 504 ISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
           +++   +   I++     +            L     A+      +      I+ +    
Sbjct: 479 LTLTPVLGSKILKANVKPNRFNRFVERVFGKLEAGYKAVLRRALNWRWAAPIIIIACMGG 538

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                  +   +  +    +     R  D +       ++ I +       G+       
Sbjct: 539 SYGLMQQVPSQLTPQEDRGVIFAFVRGTDATSYNRMSANMDIVEERLMPLLGQGFLKSFS 598

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVP 647
              P            V   + +   
Sbjct: 599 IQSPAFGGNAGDQTGFVIMILEDWDE 624



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 92/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++         + +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDAIVMSVRTARSYTEAEDFEYLVVKRASDNTPIYLKDVADVYIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V ++V K++  I           V    +  + R        +
Sbjct: 279 VNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++Y++I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYVFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSVVALTLTPVLGSKILKANVKPNR 498



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 55/165 (33%), Gaps = 9/165 (5%)

Query: 673  VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF---ALFGIEFNLTAVAAVLTL 729
            V+ +   ++ Y+ +  ++   +  +  +        G F    L     N+ +   ++ L
Sbjct: 855  VVFALAMLVAYLVLAAQFESFINPLVVMFTVPMGIFGGFLGLVLMNQGLNVYSQIGMIML 914

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ +      +L    I F   I  +    L   + T+       +P+   
Sbjct: 915  IGMVTKNGILIVEFAN---QLRDRGIEFEKAIIDASARRLRPILMTAFTTLAGAIPLITS 971

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    + FG+  A   ++F+   +   I        
Sbjct: 972  TGAGYESRVAVGTVIFFGMGFATLVTLFVIPAMYRLISGSTRSPG 1016


>gi|323936881|gb|EGB33165.1| AcrB/AcrD/AcrF family protein [Escherichia coli E1520]
          Length = 1025

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +           + L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSVSLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  + +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDMRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|313159087|gb|EFR58462.1| RND transporter, HAE1 family [Alistipes sp. HGB5]
          Length = 1031

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 69/661 (10%), Positives = 174/661 (26%), Gaps = 48/661 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +     ++I     L    +D++P  +P               + +    
Sbjct: 9   RPVFSTVLSII-----IVIVGGIGLALLPVDQYPQIVPPV-------------VRISASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTL 117
                  +       +   L    G+         +     T++F  S   +  A  +  
Sbjct: 51  PGADAQTVTQAVATPIEQELNGTPGMIYMESSSSNSGGFSATVTFDISTDPDLAAVDIQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+   ++L  +  +N +    +    ++             I  S       +D +   
Sbjct: 111 RLKKAEARLPAEVVQNGISVEKQAASKLMTITLLSSDPKFDEIYLSNYATLNVLDMLRRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P +L  L  T   +       N      + G   +   D
Sbjct: 171 PGVGSVSNVGSRYYAMQIWVMPDKLADLGLTVKDLQNALKDQNRESAAGVLGQAPMNGID 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                           +            +    +                 I    +  
Sbjct: 231 VT--------------IPITAQGRLSSVSEFEDIVVRANPDGSIIRLKDVARISLEASSY 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +          +     +      +   +   +RA         +          
Sbjct: 277 STESGINGGNAAVLNINMLPGANAMEVAGSVKKVMEEIRANFPEGISYEIPFDMTTYISE 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+F+ +   +  L+   ++ +++I T  ++ + G +L + ++
Sbjct: 337 SIHHVYRTLFEALLLVILVVFLSLQSWRATLIPIVAVPISLIGTFGVMLVFGFSLNMLTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGF---SRAYSTIFDSNITALIA 473
            G++L IG+ VD  I+V E +     +   S + +        S A   +        + 
Sbjct: 397 LGLILAIGIVVDDAIVVVENVDRIMNEEHLSPYEATKKAMGSLSGALIAMSLVLCAVFVP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDIN 526
              L    G   R F IT+ +S++IS   A+++   M            + +  + I++ 
Sbjct: 457 VSFLAGITGQLYRQFTITIAVSVIISTVVALTLSPVMCSLFLKPESGEKKNRFFRRINLG 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +        I      +R       I+     +            + +G   + +   
Sbjct: 517 LATGNRFYGRMIRGALKHSRRMLAAFGIVLVGIWLMNRLVPQSFMPQEDQGYFTVELELP 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +   R   +      ++  + +   N          +       + +      +  
Sbjct: 577 EGATIERTREVTDRAVEFLMNDPDVEYVLNVTGSSPRVGTNQARSQLTVILKPWGDRDSD 636

Query: 647 P 647
            
Sbjct: 637 G 637



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 60/148 (40%), Gaps = 8/148 (5%)

Query: 689  KWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  I +L +  I   LG + + G+E N+     ++ L+G    + +++ +  ++ 
Sbjct: 888  SWSVPVAVILSLPVAGIGAYLGIW-ICGLENNIYFQIGLVMLVGLVAKNAILIVEFAKEE 946

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +               + +      V TS+A  + +LP+      G +        + FG
Sbjct: 947  I---EKGRDAVSAALTAAHLRFRPIVMTSLAFILGLLPLVFASGPGSASRQGIGTGVFFG 1003

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++VA +  I       ++IY  +AK  R
Sbjct: 1004 MLVAITVGIVFVPFFFVWIYRIKAKLKR 1031



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/150 (20%), Positives = 62/150 (41%), Gaps = 12/150 (8%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
            W   L  I  + + +  T G   +FG   N+  +  ++  IG  V+D +VV    DR+ 
Sbjct: 362 SWRATLIPIVAVPISLIGTFGVMLVFGFSLNMLTLLGLILAIGIVVDDAIVVVENVDRIM 421

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSM---AAFISVLPMAVWGGSVIGSFAIPMA 802
               L     S  +   K++    G  +  S+   A F+ V  +A   G +   F I +A
Sbjct: 422 NEEHL-----SPYEATKKAMGSLSGALIAMSLVLCAVFVPVSFLAGITGQLYRQFTITIA 476

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             ++++   ++   +P++  ++       +
Sbjct: 477 VSVIISTVVAL-TLSPVMCSLFLKPESGEK 505


>gi|157371788|ref|YP_001479777.1| multidrug efflux system subunit MdtB [Serratia proteamaculans 568]
 gi|167008977|sp|A8GHQ9|MDTB_SERP5 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|157323552|gb|ABV42649.1| acriflavin resistance protein [Serratia proteamaculans 568]
          Length = 1039

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 59/550 (10%), Positives = 146/550 (26%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F      +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMASQSSGGASVVTLQFQLELPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPYPPIYSKVNPADPPILT-LAVTSSAMPMTQVEDMVETRVAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + + + +      +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAAAVAAYGLDSETIRTAISNANVNSAKGSLDGPT---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V +S      +  ++          +                 I +          
Sbjct: 234 --RSVTLSANDQMKSADDYRQ--------LIVAYQNGAAIRLQDIATIEQGAENTRLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           V          S S  
Sbjct: 284 ANKQPAIVLNIQRQPGVNVITTADSIREMLPQLIKSLPKSVDVKVLTDRTTTIRASVSDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAVALVVMVIYVFLRNVPATIIPSVAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLVAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ ++ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSAASERFFDRVIA 523

Query: 540 IQFMRARFWG 549
                 +   
Sbjct: 524 RYGKWLKTVL 533



 Score = 80.9 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 89/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S               + ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSADDYRQLIVAYQNGAAIRLQDIATIEQGAENTRLAAWANKQPAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +           ++++ + K +   V              +  EL+    
Sbjct: 293 NIQRQPGVNVITTADSIREMLPQLIKSLPKSVDVKVLTDRTTTIRASVSDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + ++ + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 349 --LAVALVVMVIYVFLR-NVPATIIPSVAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLVAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|238895647|ref|YP_002920382.1| multidrug efflux system subunit MdtB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238547964|dbj|BAH64315.1| multidrug transport protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 1040

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/586 (9%), Positives = 155/586 (26%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAIPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +       N +                    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAITSANVNSAKGSLDGPA---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                ++ +       G  
Sbjct: 234 ----------RAVTLSANDQMQSAEDYRRLIIAYQNGAPIRLGDVASVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   +       K+ +    +      +I 
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERFFERVIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                         + + +  S  ++ ++    +  G        +
Sbjct: 524 VYGRWLSRVLNHPWLTLGVALSTLALSIILWVFIPKGFFPIQDNGI 569



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----- 666
              +   + +  Q           + +++ + ++           V    +  +      
Sbjct: 283 WANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRD 342

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + I+ + M+IY+++R      +     + L +  T           N   + A+
Sbjct: 343 TQFELMLAIALVVMIIYLFLR-NVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMAL 401

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G+ V+D +VV + +    +             K   E     +  + +    ++P+
Sbjct: 402 TIATGFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPL 458

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G   G +   FA+ +A  I+++A  S+ +  
Sbjct: 459 LFMGDIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|220917580|ref|YP_002492884.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955434|gb|ACL65818.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1028

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/510 (12%), Positives = 144/510 (28%), Gaps = 40/510 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   +   GL     N  P+  +D+FP                    VL   +
Sbjct: 10  RPVFTAMLVLAVVVFGL-----NAYPKIGVDQFPDVDIPVVT---------VTTVLPGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +E  + L           +  +++ L F+     +  A  V   +Q  
Sbjct: 56  PESIERDVSDPLEEALNGLAGLESMRSVNVESVSQVILQFSLETKVDVAAQDVRDRVQAT 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            SKL  D  + ++         I+    +           + +++      +        
Sbjct: 116 LSKLPDDADQPIVEKLDVGAAPILTLALSGPVPPEELTRLADDVL---KPALQRQGGVGS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP+RLR      ++++      +                      
Sbjct: 173 VEVVGGREREIRILVDPARLRTFGVAASEVAQAVRGGSVDVPAGRAEDPRAEVVVKVSGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                E+                     D+     G          ++    A       
Sbjct: 233 ARSVDEL--------------------RDLVVANPGGAPVRLRDVADVVDGPAEARSAAA 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   ++  +     E      A ++          V   N      S    
Sbjct: 273 DDGRPAVALVVKKQSGANTVQVAERVTGALAGMQQLLPEGAQLRVVRDNSKFIRASIDGV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K    +   L + ++ + +   +  +V+  ++  +VI T A +  LG T  + ++  + L
Sbjct: 333 KEDLVLGGLLAVAIVLLFLRSWRTTIVSALALPTSVIGTFAAMHALGYTFNVITMLALTL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL +D  I+V E I       +    +   G       +    +  L   V + F   
Sbjct: 393 SIGLLIDDAIVVIENISRHAEHGEPPVRAAHAGTKEIALAVLAVTLAILAVFVPVAFMEG 452

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRA 509
             G     F +T+ +++ IS   ++++   
Sbjct: 453 IVGRFFSAFGMTVAVAVAISYLVSMTLTPM 482



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 53/148 (35%), Gaps = 6/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+   +A+ I +     W   + +   L   +  T       G  FN+  + A+   IG 
Sbjct: 337 VLGGLLAVAIVLLFLRSWRTTIVSALALPTSVIGTFAAMHALGYTFNVITMLALTLSIGL 396

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++D +VV + +    +                 E     +  ++A     +P+A   G 
Sbjct: 397 LIDDAIVVIENI---SRHAEHGEPPVRAAHAGTKEIALAVLAVTLAILAVFVPVAFMEGI 453

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAA 817
           V     +F + +A  + ++   S+ +  
Sbjct: 454 VGRFFSAFGMTVAVAVAISYLVSMTLTP 481



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 93/264 (35%), Gaps = 12/264 (4%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                 L       G D  G + +   A + V+L  V S +E   +  I  Q    +   
Sbjct: 743 DSYDIRLRLPPDARGADRLGELTVRSAAGQLVELRNVASLVEEPTLSQIDRQEQLRQVTL 802

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L  L        A   +     K++   V        + +G           +  +++  
Sbjct: 803 LADLPQGASLGAAMQDLSAFAAKELPPTVITDFEGQGKELGKTAGAF-----VQALLLGV 857

Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           + + + +  +F         + +L   +   LG     G   ++ A+  ++ L+G    +
Sbjct: 858 VLVYMILAAQFGSLLDPFTIMLSLPFAVIGALGALLATGQFMSIFALIGMIMLMGLVTKN 917

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
            +++ +      +L     S RD + ++    L   + T++A    ++P+A+    G  +
Sbjct: 918 GILLVEFAN---QLRERGRSARDALLEAGPIRLRPILMTTVAMIAGMVPVALARGDGAEM 974

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
               AI +  G+V +   ++ +  
Sbjct: 975 RVPMAIAIIGGLVTSTILTLVVVP 998


>gi|94498083|ref|ZP_01304646.1| acriflavin resistance protein [Sphingomonas sp. SKA58]
 gi|94422518|gb|EAT07556.1| acriflavin resistance protein [Sphingomonas sp. SKA58]
          Length = 1041

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 58/537 (10%), Positives = 157/537 (29%), Gaps = 35/537 (6%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           ++    L++A      +  +++ P                   ++        +   +  
Sbjct: 4   LVLFAALVLAGVVSFMRMDVNQNPDISFPVV---------SVTVIQPGAAPTELETQVTQ 54

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             +     +           + Q+   + F      +   + V   +  + S L     +
Sbjct: 55  RVEAAVRSISGVEDITSFASEGQSLTNVQFQIGTPVDRAVNDVKNAVDQIRSDLPQGILE 114

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
             +         I         +     E S  +      ++              +  +
Sbjct: 115 PQVQRIDVDGGPIAYFSAEATDMTLE--ELSWYVDNTIAKRLLSISGMAAVNRGGGVSRE 172

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           +    DP++L+    T A+++      N +  G    +     S        +  E+   
Sbjct: 173 IRVILDPAKLQAYGITAAQVNAQLQQVNINSAGGRTEIAGAEQSIRVLGNARNATELGET 232

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
            +                       G R         +    A      ++    +    
Sbjct: 233 QIAI--------------------SGGRTVKLADLATVRDMYAEQRSLSLMNGRQVTSFS 272

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            +     S     + A  +   L+  +  ++       +V    G            A L
Sbjct: 273 IAKAKGASDVTVYDEAMKVLDQLKKENPKVQ-YKQLYSSVDYTRGQYHSAMSAMIEGAVL 331

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
            ++++F+ +   +  +++  +I L+ I +   + ++G TL   S+  + L  G+ VD  I
Sbjct: 332 AVVIVFLFLRDWRATMISALAIPLSAIPSFWFMDMMGFTLNGISLLALSLVAGVLVDDAI 391

Query: 433 LVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +  E I    R  +S + +          A      + +   +   ++    G     F 
Sbjct: 392 VEIENIVRHMRMGKSAYQASIDAADEIGLAVLATTMAIVAVFLPVALMPGLAGQFFIQFG 451

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
           +T+ +S+L+S+  A  I   +  + ++     S     +   ++     +++  +A+
Sbjct: 452 MTVVVSVLMSLAVARLITPMIAAYFLKAHGEASHGEGWMMDRYMGVLRWSLEDRKAK 508



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 81/252 (32%), Gaps = 6/252 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G  Q+ +   R V L+ + +  +              +       + +    V       
Sbjct: 230 GETQIAISGGRTVKLADLATVRDMYAEQRSLSLMNGRQVTSFSIAKAKGASDVTVYDEAM 289

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            V  ++ +  P    +           +        +  + +A++I       W   + +
Sbjct: 290 KVLDQLKKENPKVQYKQLYSSVDYTRGQYHSAMSAMIEGAVLAVVIVFLFLRDWRATMIS 349

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + L    +  F  + G   N  ++ A+  + G  V+D +V  + +   ++      S
Sbjct: 350 ALAIPLSAIPSFWFMDMMGFTLNGISLLALSLVAGVLVDDAIVEIENI---VRHMRMGKS 406

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSI 813
                  + +E     + T+MA     LP+A+  G        F + +   ++++ + + 
Sbjct: 407 AYQASIDAADEIGLAVLATTMAIVAVFLPVALMPGLAGQFFIQFGMTVVVSVLMSLAVAR 466

Query: 814 FIAAPILLFIYD 825
            I   I  +   
Sbjct: 467 LITPMIAAYFLK 478



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/111 (14%), Positives = 44/111 (39%), Gaps = 6/111 (5%)

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   +L     +L L+G    + ++V D   + M      +  ++ I  + ++     V 
Sbjct: 899  GQPLSLPVFIGLLMLLGIVAKNSILVIDFALEEM---EKGVPKKEAIIDAGHKRAQPIVM 955

Query: 775  TSMAAFISVL--PMAVWGGSVIG-SFAIPMAFGIVVAASSSIFIAAPILLF 822
            T++A    ++   +++ G         I +  G++++   ++ I   +   
Sbjct: 956  TTVAMVAGMVPTALSLSGDGAFRAPMGITVIGGLILSTILTLVIVPAVFSL 1006


>gi|298487209|ref|ZP_07005258.1| Acriflavin resistance plasma membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158233|gb|EFH99304.1| Acriflavin resistance plasma membrane protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
          Length = 1036

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGGLRWVLRHQPLTLLAALATLALTVLLYIVVPKGFFPVQ 557



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.8 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I ++        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPETAIYEAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      + +R
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|238912557|ref|ZP_04656394.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 1040

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|71066637|ref|YP_265364.1| RND superfamily multidrug efflux system protein [Psychrobacter
           arcticus 273-4]
 gi|71039622|gb|AAZ19930.1| RND superfamily multidrug efflux pump [Psychrobacter arcticus
           273-4]
          Length = 1036

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 73/601 (12%), Positives = 174/601 (28%), Gaps = 40/601 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N    ++L+ ++   GL         Q  + +FP       +           + L   
Sbjct: 11  KNPLVAILLFVLLTLGGLF-----GFQQMKVQQFPDIDLPAVV---------VTVTLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + ++       +++     I   F   +  +   D V   +  
Sbjct: 57  APSQLENDVAKKIENRLTSIEGIKHIRTTLQTGAATIATEFVLEKDIQEAMDDVRSAVGE 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L       ++   +     +V      +       + S  +      ++   +   
Sbjct: 117 VRGDLPAAANDPIITKVSTAGFPVVTYSVTGNN--MSVEDLSWFVDDTITKRLSDIQGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    DP  L  L  +  ++S           G    V     +     
Sbjct: 175 AISRIGGLEREITVAADPIVLSGLQLSIPQLSQQIAGIQQDSAGGEAEVGNTTQTIRVLG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            VE   E++ + +   T           V        +                      
Sbjct: 235 AVERARELNDLQIAVPTGGTQALGRMAEVTDGAANPSSVA-------------------- 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A    +++ +    +      A    +  +                     
Sbjct: 275 -KLDGETVVAFNITRSRGASEVEVTKRVDEALAQLSAEMSNIEVEKVYDRATPVAEDYES 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L ++V+F+ +   +  +VA  ++ L+VI T   + L   +L + S+  + 
Sbjct: 334 SLRMLIEGGILAVVVVFLFLRNIRATIVAAVALPLSVIPTFLGMYLFDFSLNIISLLALS 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I    R  ++ + +           +  +  T +   +   F G
Sbjct: 394 LVIGVLVDDAIVEVENIIRHLRMGKTPYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F  T  ++I  S+  A  I   M  +I+R +K +    + L  ++L     
Sbjct: 454 GVVGQFFRQFGWTAAMAIFASLLVARLITPMMAAYILRPEKQRVEKQSALMTWYLKIVSW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +           +  + S+  + LL T  +      +  + + +  +  ++ +   + L
Sbjct: 514 TLHHRWLTMGATLLLFVGSLALVQLLPTSFIPDNDIDQTRVGIELTPDVELEDTERVTAL 573

Query: 599 E 599
            
Sbjct: 574 A 574



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 81/254 (31%), Gaps = 6/254 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           Q+ V       L  +    +         +            + +    V  T+ ++   
Sbjct: 246 QIAVPTGGTQALGRMAEVTDGAANPSSVAKLDGETVVAFNITRSRGASEVEVTKRVDEAL 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +++  +    ++        ++ +      + +    +A+++           + A   
Sbjct: 306 AQLSAEMSNIEVEKVYDRATPVAEDYESSLRMLIEGGILAVVVVFLFLRNIRATIVAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T     LF    N+ ++ A+  +IG  V+D +V  + +   ++      +  +
Sbjct: 366 LPLSVIPTFLGMYLFDFSLNIISLLALSLVIGVLVDDAIVEVENI---IRHLRMGKTPYE 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     + T+       LP A  GG V      F    A  I  +   +  I 
Sbjct: 423 AAMEAADEIGLAVIATTFTLIAVFLPTAFMGGVVGQFFRQFGWTAAMAIFASLLVARLIT 482

Query: 817 APILLFIYDWRAKN 830
             +  +I     + 
Sbjct: 483 PMMAAYILRPEKQR 496



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/390 (12%), Positives = 111/390 (28%), Gaps = 9/390 (2%)

Query: 448  VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIV 507
               ++      A  T+  S+      +  L       +   A  +   I           
Sbjct: 634  QISAILTEVPSARFTVGLSSGGETGYSFSLTSTNPQVLEQTAQQIMTDIRALQIAGAVTS 693

Query: 508  RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
               +           + +                     +      +      I ++   
Sbjct: 694  DRSLPQQELTVTPDRLAMADKGVTTQDIATTLRIATVGDYEQRLSKLNLDTRQIPIVVRL 753

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +      L V + RP    V    +  L  G    Q    ++   + +  QPG 
Sbjct: 754  PDVAKQNVNQLEGLYVPSTRPAGQGVRVGEVADLNFGTGPAQISRLDRERSITVTVQPGA 813

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                  ++E VK   T     ++I        +   EL    ++ + +  I +L  + + 
Sbjct: 814  GELGD-LVEAVKNTPTMQQLPASITMIAQGQAENMAELFSGFVIAMSVGIICILGVLILL 872

Query: 688  F-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            F K       +  L L I        +     ++ ++   + L+G +  + +++ D    
Sbjct: 873  FGKLLQPFTILMALPLSIGGAFVGLVITSSSLSMPSMIGFIMLMGIATKNSILLVD---Y 929

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV----IGSFAIPMA 802
             +      +   + I  +  +     + T++A    +LP+    G          A  + 
Sbjct: 930  AIIAQRRGLERFEAIIDACRKRARPIIMTTIAMGAGMLPLVFGWGDADPTFRRPMAAAVL 989

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G+V +   S+ +   +   + D     A+
Sbjct: 990  GGLVTSTLLSLVVIPVVYTLMDDLSGWFAK 1019


>gi|311894861|dbj|BAJ27269.1| putative preprotein translocase SecD subunit [Kitasatospora setae
           KM-6054]
          Length = 594

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 113/589 (19%), Positives = 214/589 (36%), Gaps = 59/589 (10%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DED 63
             +   ++  +GL+  +                      LG+DL GG+ + L     D  
Sbjct: 15  RALALILVVTVGLVALMFGTGNTKP-------------RLGIDLAGGTSVTLTAKSDDPS 61

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADS----RFKENIADKVTLF 118
                 L    + ++  +   G+    ++   N  I ++  D     +  + + D   L+
Sbjct: 62  AVNKTNLDTAVNIIQKRVNGMGVSEAEVQTQGNANIIVNIPDGGNTQQSIDKVGDTAKLY 121

Query: 119 LQGVNSKLNVDPKKN-----------------------LLVTTTEKEISIVLSQNNIDQV 155
            + V +                                    +         S +     
Sbjct: 122 FRPVLAAEPSGAAAQQPSPSASASGGASASPSAGASAVAGSPSASASAPASASASATKAG 181

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL----RQLLGTTAK 211
            + +     +             S   +  +           D   L    +      + 
Sbjct: 182 RALSGALQADPTASASGSASAQPSASAQASAPAANPSAAPTPDAETLALQQKYAALDCSD 241

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQY-LVEDKVEISGIHLN-GATANFDPKTHKPV 269
            +        +            D  G  Y  V   V ++G  +               +
Sbjct: 242 KAQRLNYQKTNDPTAPAIACSYNDEQGLWYKFVLGGVAVNGQDVTKAQAVYDTQTGKGWM 301

Query: 270 VDISFDEMGARRFFEVTRD-----NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
           VD+SF++ G++ F   T       +     A+VLDG+V++ P + ++I  G A I+G FT
Sbjct: 302 VDLSFNDTGSKAFAATTGQLATQSSPANQFAIVLDGQVVSHPYVQESITGGNAVINGTFT 361

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            + A  LA +L  G+LP+     +   V   LGS+ +  G  A + G+VL+V + +V Y 
Sbjct: 362 SDEAKSLANVLSYGALPLDFVKSDVTTVSPQLGSEQLKAGLIAGLIGMVLVVAYSLVYYR 421

Query: 385 KWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
             GL++   + ++ +LT +++SLL    G  L LP++ G ++ IG+  DS I+  ERIR+
Sbjct: 422 GLGLISIAGLVVSAVLTWSIMSLLGAGIGFALNLPAVCGAIVAIGITADSFIVYFERIRD 481

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E R+   +  ++   + RA  TI  S+  + +   VL+    G V+GFA T+GL+ L+ +
Sbjct: 482 EVREGAQLRAAVQRAWPRARRTILVSDFVSFLCAAVLYLVSVGKVQGFAFTLGLTTLLDV 541

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
                  + ++  + R K   S           +     I+  R R   
Sbjct: 542 VVIFLFTKPLITLLARTKFFASGHPWSGLDPKRLGARPPIRGSRRRSTT 590



 Score =  100 bits (249), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 29/265 (10%), Positives = 87/265 (32%), Gaps = 9/265 (3%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             ++   +  G         +    S   +   ++ +      +   +++         G
Sbjct: 300 WMVDLSFNDTGSKAFAATTGQLATQSSPANQF-AIVLDGQVVSHPYVQESITGGNAVING 358

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
              +              +       +   V P++  E ++ G++  +I  + ++ Y  +
Sbjct: 359 TFTSDEAKSLANVLSYGALPLDFVKSDVTTVSPQLGSEQLKAGLIAGLIGMVLVVAYSLV 418

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            ++    L +I  L++    T    +L G       NL AV   +  IG + +  +V ++
Sbjct: 419 YYR-GLGLISIAGLVVSAVLTWSIMSLLGAGIGFALNLPAVCGAIVAIGITADSFIVYFE 477

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R  ++        R  + ++        + +   +F+    + +     +  FA  + 
Sbjct: 478 RIRDEVRE---GAQLRAAVQRAWPRARRTILVSDFVSFLCAAVLYLVSVGKVQGFAFTLG 534

Query: 803 FGIVVAASSSIFIAAPILLFIYDWR 827
              ++          P++  +   +
Sbjct: 535 LTTLLDVVVIFLFTKPLITLLARTK 559


>gi|269126347|ref|YP_003299717.1| protein-export membrane protein SecD [Thermomonospora curvata DSM
           43183]
 gi|268311305|gb|ACY97679.1| protein-export membrane protein SecD [Thermomonospora curvata DSM
           43183]
          Length = 584

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 123/565 (21%), Positives = 215/565 (38%), Gaps = 58/565 (10%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +L       GL   +      +               L LDL GG+ + L  + +   
Sbjct: 12  RTLLALFAVLAGLTGVMFLHGQTTP-------------RLALDLAGGTSVTLTAETEGGG 58

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGV 122
              +  +Q     +R+ +   G+    + +   + I +    +  +  + D +    Q  
Sbjct: 59  SPPDAQMQQAVKIIRNRVNGLGVSEAEVSRQGADHIVVQVPGTGDQRRVVDLIGTTAQLQ 118

Query: 123 NSKLNVDPKKNLLVTTTEKEIS----------IVLSQNNIDQVISHAIEQSM-----EII 167
             ++ V      L                      S +      + A  +++     +  
Sbjct: 119 FRQVLVSAGPGPLTGAGPSPSPSGKEDKAGQSPGPSPSATPAPQATARPRALSRALTDPS 178

Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
            Q       + S          L QL   QD       +G  A ++  + L   ++    
Sbjct: 179 AQPSPSATPTPSASLPTDLQEQLDQLIRRQDGQLDYAGIGDKAVITQFERLDCTAQDKKA 238

Query: 228 FGV-------RFLRDSDGNQYLVEDKVEISGIHL---NGATANFDPKTHKPVVDISFDEM 277
            G              DG+   +   V + G  +        N         V + F   
Sbjct: 239 PGADDPAKQWVAACGEDGSAKYILGPVRVEGRQIDEAEAVPPNMQEGRSTWSVQLKFKSQ 298

Query: 278 GARRFFEVTRDNIG-------KPLAVVLDGRVLTAPVINQAIPSGKAQISG---NFTIET 327
           GAR+F E+T +          + +A+VLDGRV++AP IN+ I  G A I G    FT   
Sbjct: 299 GARQFAELTEEAYRASVSSPRRQIAIVLDGRVVSAPQINEPITGGTASIDGPAETFTQTY 358

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  LA  L+ G+LP+K    +   V + LGSD + KG  A   GL L+V + ++ Y   G
Sbjct: 359 AIDLANKLKYGALPLKFERGQAETVSSTLGSDQLEKGMQAGALGLALVVAYSLLYYRGLG 418

Query: 388 LVADFSIFLNVILTLALLSLLG------ATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           LV+  S+ +   +T   + LLG        L+L  + G+++ IG+A DS I+  ER+R+E
Sbjct: 419 LVSVASLAVAAAITYLAVVLLGYEGTLGFRLSLAHVIGLIVSIGIAADSFIVYFERLRDE 478

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R+ + +  +++  + RA  TI  ++    I   VL+    G V+GFA  +GL+ LI + 
Sbjct: 479 LREGRPLRSAVESAWVRARRTILVADAVMFIGAAVLYVLAVGGVKGFAFAIGLTTLIDVV 538

Query: 502 TAISIVRAMMIFIIRYKKMKSIDIN 526
                 + M+  + R +        
Sbjct: 539 VVFFFTKPMVTLLARRRFFARGHRW 563



 Score = 98.6 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 10/186 (5%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                  E V   +  + + KG+    +    ++ Y  + ++    L ++ +L +    T
Sbjct: 374 KFERGQAETVSSTLGSDQLEKGMQAGALGLALVVAYSLLYYR-GLGLVSVASLAVAAAIT 432

Query: 708 LGFFALFGIEFNLTA------VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                L G E  L        V  ++  IG + +  +V ++R+R  ++        R  +
Sbjct: 433 YLAVVLLGYEGTLGFRLSLAHVIGLIVSIGIAADSFIVYFERLRDELRE---GRPLRSAV 489

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + +        +      FI    + V     +  FA  +    ++      F   P++ 
Sbjct: 490 ESAWVRARRTILVADAVMFIGAAVLYVLAVGGVKGFAFAIGLTTLIDVVVVFFFTKPMVT 549

Query: 822 FIYDWR 827
            +   R
Sbjct: 550 LLARRR 555


>gi|197336424|ref|YP_002157312.1| acriflavin resistance protein [Vibrio fischeri MJ11]
 gi|197317914|gb|ACH67361.1| acriflavin resistance protein [Vibrio fischeri MJ11]
          Length = 1023

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 77/610 (12%), Positives = 179/610 (29%), Gaps = 44/610 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +G+         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGIQAIF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               Q+ IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSQSVMGQSTITVTMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D+++S   + +  + R    Q+       
Sbjct: 115 VRSQLPKESEDPTVTMSTGSTTAVLYIGFTSDELVSS--QITDYLERVVNPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+R+  +  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRIWLDPARMAAIKMTATDVMGVLNANNFQSAAGQATGEFVLYNGSANT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V D  E+  + +                                   +    +  +   
Sbjct: 233 QVSDVEELENLVIRT--------------------NDGEVVRLSDIAKVSLDKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLELLPQLEKNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VLIV+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTILEAALIVLIVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  ++ F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGETPFRAAIIGTREIAVPVIAMTLTLGAVYAPIAMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +        +  K +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLVANEEPNRFEKKVHHILDGMSER 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               + +   R         I+F+   +   F        + KG + L   A    +L  
Sbjct: 513 YERMLNVIMTRRPVIIAFAVIVFASLPLLFKFIPSELAPSEDKGVVVLMGTAPSNANLDY 572

Query: 594 VRSNLESLQI 603
           +++ ++ +  
Sbjct: 573 IQNTMDDVNN 582



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 82/242 (33%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V LS +                   E            + +     +  + 
Sbjct: 244 VIRTNDGEVVRLSDIAKVSLDKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++ + +P +   N          E I + I  ++ +A+ +LI I +    +   +  I 
Sbjct: 304 PQLEKNLPSNIKMNVMYDSTIAINESIHEVIKTILEAALIVLIVITLFLGSFRAVIIPIV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +          G  +NL  + A++  IG  V+D +VV + +    +      +  
Sbjct: 364 TIPLSLIGVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGETPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVIAMTLTLGAVYAPIAMMGGITGSLFKEFALTLAGSVFVSGIVALTL 480

Query: 816 AA 817
           + 
Sbjct: 481 SP 482



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 76/777 (9%), Positives = 217/777 (27%), Gaps = 36/777 (4%)

Query: 74   SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             +EL + +         + ++ +   +S   S      +      +    +        N
Sbjct: 237  VEELENLV--IRTNDGEVVRLSDIAKVSLDKSHDVYRASANGQEAVVAAINAAPSANPIN 294

Query: 134  LLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISESTIQRLGSH 187
            +     E    +   + S   ++ +    I  +    E+I+  ++   I    I      
Sbjct: 295  IAADVLELLPQLEKNLPSNIKMNVMYDSTIAINESIHEVIKTILEAALIVLIVITLFLGS 354

Query: 188  RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
               + +P    P  L  +      M F       +    +  +  + D         D+ 
Sbjct: 355  FRAVIIPIVTIPLSLIGVAMVMQAMGFSW--NLMTLLAMVLAIGLVVDDAIVVLENVDRH 412

Query: 248  EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
               G     A      +   PV+ ++         +       G   ++  +  +  A  
Sbjct: 413  IKLGETPFRAAIIGTREIAVPVIAMTLTLGA---VYAPIAMMGGITGSLFKEFALTLAGS 469

Query: 308  INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
            +  +            +               +   L+ + ER         +      A
Sbjct: 470  VFVSGIVALTLSPMMCSKMLVANEEPNRFEKKVHHILDGMSERYERMLNVIMTRRPVIIA 529

Query: 368  IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
                +   +  +          ++    + ++ T    + L            +L     
Sbjct: 530  FAVIVFASLPLLFKFIPSELAPSEDKGVVVLMGTAPSNANLDYIQNTMDDVNNILSAQPE 589

Query: 428  VDSNILVNERIREENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
            V+   + N           +   +  +   S+A  T     + + I  + +  F    + 
Sbjct: 590  VEYAQVFNGVPNSNQAFGLATLKTWSEREASQAEVTKRVGGLVSDIPGMAVTAFQMPELP 649

Query: 487  GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            G    + +  +I+   +   +  +   ++   K   + +            + I   + +
Sbjct: 650  GAGSGLPIQFVITTPNSFESLFQIATEVLTGVKGSPLFVYSDLDLNFDSATMKINIDKDK 709

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGI---QLGVLANRPVDLSVVRSNLESLQI 603
                G+++     ++  +   G    ID  G        V     ++   + +       
Sbjct: 710  AGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKFRLNPESMNNYYVRSAN 769

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI------------ 651
            G+          + +   +  P  +   +  +  V      +                  
Sbjct: 770  GEAVPLGSLVSIDVIAEPRSLPHFNQLNSATVGAVPSPGIAMGDAINWFEDVANNKLPSG 829

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     L  + ++ L I   L 
Sbjct: 830  YNHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESIRDPLVIMVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++    +  S      + ++    L
Sbjct: 890  ALAWGAASMNIYSQVGLITLVGLITKHGILICEVAKEEQLHHQKSK--MAAVTEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++
Sbjct: 948  RPILMTTAAMIAGLIPLLYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYL 1004


>gi|213425519|ref|ZP_03358269.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPAIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSSVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRKLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSRQSLRKQNRF 510



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 62/164 (37%), Gaps = 7/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G +   FA+ +A  I+++A  S+ +   +   +   ++   
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSRQSLRK 506


>gi|269795061|ref|YP_003314516.1| protein-export membrane protein SecD [Sanguibacter keddieii DSM
           10542]
 gi|269097246|gb|ACZ21682.1| protein-export membrane protein SecD [Sanguibacter keddieii DSM
           10542]
          Length = 714

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 125/611 (20%), Positives = 222/611 (36%), Gaps = 71/611 (11%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DEDDFVNGFLQM 72
            IGL I +        +  + S    +   L LDL GG+ ++L+    D     +  +  
Sbjct: 15  LIGLGIIVLVLFGSIGIGTWQSDASWSP-KLALDLEGGTQIILQPVTTDGQTVTSEDINQ 73

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL------ 126
               +R  +   G+    +        +     +  +   D V    Q     +      
Sbjct: 74  AIAIIRQRVDSSGVSEAEITSQGGSNIVVALPGQPSQETLDLVRESAQMQFRPVLSFSMV 133

Query: 127 --------------------------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
                                       D            + +   +++     ++ A 
Sbjct: 134 APTALPTEDPTTGPTAPTDVPTEDVAPEDGATTDAPEEPATDATTEPAESGSGGGVAAAT 193

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
           + ++E       +    E T                  PS    L   T ++        
Sbjct: 194 DPAVEPTTDAATEPA-VEPTTDATEPAVEPTTDAEVPLPSNPSDLAQITPELLAEFQALT 252

Query: 221 NSKKGFMFGVRF--------LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK----- 267
            S      G           +   DG    +   +EI+G  ++ A++     +       
Sbjct: 253 CSPDASAAGTAPKDPASPIAVCSVDGTMKYILGPMEIAGTEIDSASSGLQVNSQGVALNT 312

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVL-----------------DGRVLTAPVINQ 310
             V++ F   G  +F +VT      P                      D +V+ AP +  
Sbjct: 313 WAVNLRFTAAGTDKFADVTTRLATLPTYAQWISTENPTLAPNMFAMVLDNQVIGAPGVTA 372

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            IP G+A+I+G++T ETA  LA  L  G+LP+   +  E+ + A LGS+ + KG  A + 
Sbjct: 373 TIPDGRAEITGSYTRETATALANQLNFGALPLTFEVQSEQQISATLGSEQLEKGMIAGLI 432

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIAGIVLGIGL 426
           GL+L+V++ +  Y   GLV   S+ +  ++T  +++LL  T     +LP +AG+++ IG+
Sbjct: 433 GLLLVVVYSLFQYRALGLVTVASLLIAGLVTYGMITLLSWTQGYRLSLPGVAGLIVAIGI 492

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
             DS I+  ERIR+E R  +S+  ++D G+ RA  TI  S+    +A VVL+F   G VR
Sbjct: 493 TADSFIVYFERIRDELRDGRSLTSAVDTGWDRARRTIVASDTVNFLAAVVLYFLAVGGVR 552

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
           GFA T+GL+ L+ +         +M  + R +               +         R R
Sbjct: 553 GFAFTLGLTTLVDLIVVFFFTHPLMKLLARTRFFADGHPASGLDPHRLGATGVRYAGRGR 612

Query: 547 FWGVGISILFS 557
                 +    
Sbjct: 613 VVTPATAAATP 623



 Score =  115 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 83/251 (33%), Gaps = 12/251 (4%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + +             +   +           +                  +  ++ 
Sbjct: 339 TYAQWISTENPTLAPNMFAMVLDNQVIGAPGVTATIPDGRAEITGSYTRETATALANQLN 398

Query: 644 EIVP--LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                    +Q+ + +   +  E + KG++  +I  + +++Y   +++    L  + +L+
Sbjct: 399 FGALPLTFEVQSEQQISATLGSEQLEKGMIAGLIGLLLVVVYSLFQYR-ALGLVTVASLL 457

Query: 702 LDITKTLGFFALFGIE----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
           +    T G   L         +L  VA ++  IG + +  +V ++R+R  ++      S 
Sbjct: 458 IAGLVTYGMITLLSWTQGYRLSLPGVAGLIVAIGITADSFIVYFERIRDELRD---GRSL 514

Query: 758 RDLIDKSINETLGRSVYTSMAA-FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              +D   +    R++  S    F++ + +       +  FA  +    +V      F  
Sbjct: 515 TSAVDTGWDRA-RRTIVASDTVNFLAAVVLYFLAVGGVRGFAFTLGLTTLVDLIVVFFFT 573

Query: 817 APILLFIYDWR 827
            P++  +   R
Sbjct: 574 HPLMKLLARTR 584


>gi|200388558|ref|ZP_03215170.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199605656|gb|EDZ04201.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|168466210|ref|ZP_02700080.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195631455|gb|EDX50015.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|149203883|ref|ZP_01880852.1| Acriflavin resistance protein [Roseovarius sp. TM1035]
 gi|149143000|gb|EDM31042.1| Acriflavin resistance protein [Roseovarius sp. TM1035]
          Length = 1032

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/512 (13%), Positives = 145/512 (28%), Gaps = 39/512 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   +I   G+       L    +   P                         
Sbjct: 9   RRPVLAAVASLLIVIFGVAA-----LRSIPVRELPDVDNAVVT---------VTTTYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +          RQ ++++T+ F  S   +  A+ V   +  
Sbjct: 55  APEVIDTDITETVEGAIASISGIRTISSESRQGRSRVTIEFETSVDIDVAANDVRDAVGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +  +  +V +      ++      D       E +  I R  +D+    +   
Sbjct: 115 VRGDLPEEADEPQVVKSDADADPVMRVAVTSD--RMTTAEITDYIDRFVVDRFSTLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D   L     T + +    +  N             + +     
Sbjct: 173 NVDVIGAQPFAVRIWIDRRALAARNLTVSDVEAALLRNNLELPAGEVESINRQMTVRLNS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                       +   DI  D +            +   +A      
Sbjct: 233 RLRS--------------------IEDFRDIVIDRVAGYPVRLGDVARVVPGVADDSTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++Q +              L          IV   +      S   
Sbjct: 273 RTNGTEAVGMWILRQSQSNTLEISNAVRAEIKTLEPNLPEGMKIIVGSDDALFVGASIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I   LV+ V+ + +   +  LV   +I +++I +  L+ + G +L   ++  ++
Sbjct: 333 VVIALFISLALVVAVILLFLRSIRATLVPFITIPVSLIGSFLLIGMWGFSLNTLTLLALL 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I+      +S   +   G  +    +  ++IT +   V L F  
Sbjct: 393 LAIGLVVDDAIVVLENIQRRIEDGESPLVASVHGARQVTFAVIATSITLIAVFVPLSFMP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAM 510
           G   R    F   M  ++ IS F A+S   A+
Sbjct: 453 GQVGRLFVEFGWVMAGTVAISTFVALSACPAL 484



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 83/256 (32%), Gaps = 7/256 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +  +A  PV L  V   +  +       +    E   +  L+    +++  +  +    
Sbjct: 244 VIDRVAGYPVRLGDVARVVPGVADDSTIVRTNGTEAVGMWILRQSQSNTLEISNAVRAEI 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAIT 698
           K +   +P                  IR+ ++ + IS   ++  I          L    
Sbjct: 304 KTLEPNLPEGMKIIVGSDDALFVGASIREVVIALFISLALVVAVILLFLRSIRATLVPFI 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ + +  +     ++G   N   + A+L  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPVSLIGSFLLIGMWGFSLNTLTLLALLLAIGLVVDDAIVVLENI---QRRIEDGESPL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFI 815
                   +     + TS+      +P++   G V      F   MA  + ++   ++  
Sbjct: 421 VASVHGARQVTFAVIATSITLIAVFVPLSFMPGQVGRLFVEFGWVMAGTVAISTFVALSA 480

Query: 816 AAPILLFIYDWRAKNA 831
              +   +   R   A
Sbjct: 481 CPALASKVLSARKLRA 496



 Score = 39.7 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 80/216 (37%), Gaps = 7/216 (3%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            ++L            VLE +++   +I+P       +             G+V ++   I
Sbjct: 802  IQLSGALAPDAELGDVLEQLQEIAADILPPEAKLGYDGQSRTYIDTSAGVGVVFLLALLI 861

Query: 679  AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
              L+       +   L  + T+ + +   +   A  G+  N+ +   ++ LIG    + +
Sbjct: 862  VYLVLAAQFESFVHPLVIMLTVPIGVAGAIYAMAAGGLSLNVYSQIGIILLIGLISKNGI 921

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ +      +L     + RD + ++    L   + T+++  +  +P+      G     
Sbjct: 922  LIVEFAN---QLRDEGYAVRDAVIEASVLRLRPIMMTAVSTVLGAVPLVTASGAGAESRI 978

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    +  G+ +A +  +F+  PIL  +     +  
Sbjct: 979  AVGTVIIAGLAMATALMLFV-TPILYDLMARFTRPR 1013


>gi|290508618|ref|ZP_06547989.1| multidrug efflux system subunit MdtB [Klebsiella sp. 1_1_55]
 gi|289778012|gb|EFD86009.1| multidrug efflux system subunit MdtB [Klebsiella sp. 1_1_55]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/610 (10%), Positives = 164/610 (26%), Gaps = 45/610 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAIPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +       N +                    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAITSANVNSAKGSLDGPA---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                ++ +       G  
Sbjct: 234 ----------RAVTLSANDQMQSAEDYRRLIIAYQNGAPIRLGDVASVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP---- 535
             G   R FA+T+ ++ILIS   ++++   M   ++ ++ ++  +    +          
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERFFERVIA 523

Query: 536 ---DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                ++                 ++  I  +F     + I   G IQ  + A + V  +
Sbjct: 524 VYGRWLSRVLNHPWLTLGVALSTLALSIILWVFIPKGFFPIQDNGIIQGTLQAPQSVSFA 583

Query: 593 VVRSNLESLQ 602
            +      + 
Sbjct: 584 SMAERQRQVA 593



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----- 666
              +   + +  Q           + +++ + ++           V    +  +      
Sbjct: 283 WANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRD 342

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + I+ + M+IY+++R      +     + L +  T           N   + A+
Sbjct: 343 TQFELMLAIALVVMIIYLFLR-NVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMAL 401

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G+ V+D +VV + +    +             K   E     +  + +    ++P+
Sbjct: 402 TIATGFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPL 458

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G   G +   FA+ +A  I+++A  S+ +  
Sbjct: 459 LFMGDIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|322615156|gb|EFY12078.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617748|gb|EFY14644.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624658|gb|EFY21489.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626891|gb|EFY23687.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634077|gb|EFY30813.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635732|gb|EFY32442.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640263|gb|EFY36926.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646319|gb|EFY42832.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649412|gb|EFY45848.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656532|gb|EFY52821.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661508|gb|EFY57732.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665604|gb|EFY61788.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667128|gb|EFY63295.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671134|gb|EFY67262.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675225|gb|EFY71302.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680834|gb|EFY76869.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687009|gb|EFY82986.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192773|gb|EFZ78000.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198795|gb|EFZ83894.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204927|gb|EFZ89918.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208238|gb|EFZ93182.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323215737|gb|EGA00480.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221876|gb|EGA06274.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323227225|gb|EGA11396.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231182|gb|EGA15297.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233617|gb|EGA17709.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237687|gb|EGA21747.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245670|gb|EGA29664.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247747|gb|EGA31689.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252963|gb|EGA36796.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256765|gb|EGA40490.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323268254|gb|EGA51729.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|206576409|ref|YP_002237489.1| multidrug resistance protein MdtB [Klebsiella pneumoniae 342]
 gi|288934414|ref|YP_003438473.1| acriflavin resistance protein [Klebsiella variicola At-22]
 gi|226700677|sp|B5XPB9|MDTB_KLEP3 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|206565467|gb|ACI07243.1| multidrug resistance protein MdtB [Klebsiella pneumoniae 342]
 gi|288889143|gb|ADC57461.1| acriflavin resistance protein [Klebsiella variicola At-22]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/586 (9%), Positives = 155/586 (26%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAIPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +       N +                    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAITSANVNSAKGSLDGPA---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                ++ +       G  
Sbjct: 234 ----------RAVTLSANDQMQSAEDYRRLIIAYQNGAPIRLGDVASVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   +       K+ +    +      +I 
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERFFERVIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                         + + +  S  ++ ++    +  G        +
Sbjct: 524 VYGRWLSRVLNHPWLTLGVALSTLALSIILWVFIPKGFFPIQDNGI 569



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----- 666
              +   + +  Q           + +++ + ++           V    +  +      
Sbjct: 283 WANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRD 342

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + I+ + M+IY+++R      +     + L +  T           N   + A+
Sbjct: 343 TQFELMLAIALVVMIIYLFLR-NVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMAL 401

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G+ V+D +VV + +    +             K   E     +  + +    ++P+
Sbjct: 402 TIATGFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPL 458

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G   G +   FA+ +A  I+++A  S+ +  
Sbjct: 459 LFMGDIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|160897860|ref|YP_001563442.1| acriflavin resistance protein [Delftia acidovorans SPH-1]
 gi|160363444|gb|ABX35057.1| acriflavin resistance protein [Delftia acidovorans SPH-1]
          Length = 1053

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/550 (12%), Positives = 158/550 (28%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +  +GL+      +       +P+                         
Sbjct: 11  RPVATTLLTLAMVVVGLVAMRFLPVSSLPSVDYPTVQ--------------VQTFYPGAS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D ++  +    +     +              + ITL F  ++  +     V   +   
Sbjct: 57  PDVMSTTVTAPLEVQLGQIPGLQQMTSYSSAGASVITLQFDLAQSLDVAQQNVQQSINAA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                   +L+   +        +       +   +I        
Sbjct: 117 ASFLPTGLPAPPTYAKVNPADQPILT-LAVTSRSMSLTQLQDVANSRLAAKISEVAGVGL 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            + +   +  +  E DP +L         +       N S+    F    L  +  +   
Sbjct: 176 VVSAGGNVPAIRVEADPQKLAAYGLNLDDLRTLLANVNVSQPKGNFDGEALDYTINSNDQ 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D                     +  +D                  + +    V  G  
Sbjct: 236 ISDP--------------------QQYLDTVLAYQNGAPVHLRDVARVSQAAQDVERGAW 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T++    L   LRA         V + + G    S +  
Sbjct: 276 YNGTPAIVLNVQRQPGANVIKTVDQIMRLLPGLRATLPAGMEVTVAQDSTGMIRASVNDA 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   LV+ V+F+ +      ++   S+ +++I T+AL+  LG ++   S+  +++
Sbjct: 336 AFELVLAVALVVAVIFVFLRNLPATIIPSISVPVSLIGTMALMYELGYSIDNLSLMALII 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD +I++ E +     +      +   G  +   TI    I+ +   + L F GG
Sbjct: 396 ATGFVVDDSIVMIENVVRYLEEGMPPLQAALKGAGQIGFTILSLTISLIAVLIPLLFMGG 455

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              R    FA+T+ ++I +S   ++++V  +   I+R    +       +   L    +A
Sbjct: 456 VIGRLFSEFAVTLAVTIGLSAVVSLTVVPMLCARILRATPQRRPSRFEKASEGLFNRTLA 515

Query: 540 IQFMRARFWG 549
                  +  
Sbjct: 516 GYERGLAWVL 525



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 85/265 (32%), Gaps = 10/265 (3%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
            L +T   N  I         VLA +      +R      Q      +         + L
Sbjct: 225 ALDYTINSNDQISDPQQYLDTVLAYQNGAPVHLRDVARVSQAAQDVERGAWYNGTPAIVL 284

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----RKGIVGVIISA 677
             Q        + ++ + + +  +           V    +  +           V+  A
Sbjct: 285 NVQRQPGANVIKTVDQIMRLLPGLRATLPAGMEVTVAQDSTGMIRASVNDAAFELVLAVA 344

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + + +           +    ++ + +  T+      G   +  ++ A++   G+ V+D 
Sbjct: 345 LVVAVIFVFLRNLPATIIPSISVPVSLIGTMALMYELGYSIDNLSLMALIIATGFVVDDS 404

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
           +V+ + +   ++     +       K   +     +  +++    ++P+   GG +    
Sbjct: 405 IVMIENV---VRYLEEGMPPLQAALKGAGQIGFTILSLTISLIAVLIPLLFMGGVIGRLF 461

Query: 796 -SFAIPMAFGIVVAASSSIFIAAPI 819
             FA+ +A  I ++A  S+ +   +
Sbjct: 462 SEFAVTLAVTIGLSAVVSLTVVPML 486



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 65/164 (39%), Gaps = 6/164 (3%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +A+ + + + ++ +   +  ++TL       L    L G + ++  +  ++ LIG
Sbjct: 864  LIAALVAVYVVLGVLYESYIHPVTILSTLPSAGIGALLALMLAGKDLDVIGIIGIVLLIG 923

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ D   +           RD I ++        + T+ AA +  LPM +   
Sbjct: 924  IVKKNAIMIVDFALE--AEREQGKPPRDAIFEASLLRFRPILMTTFAAMLGALPMLLGTG 981

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G  +     + +  G+  +   ++F    I LF      +  R
Sbjct: 982  TGSELRRPLGLAIIGGLAFSQVLTLFTTPVIYLFFDRMARRFRR 1025


>gi|323168801|gb|EFZ54481.1| multidrug resistance protein mdtC [Shigella sonnei 53G]
          Length = 781

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/603 (11%), Positives = 167/603 (27%), Gaps = 44/603 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            ++L   I   G+L           +   P       +             L     + +
Sbjct: 3   TILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGASPETM 48

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    +     +        S      +I L F   R     A  V   +    S L
Sbjct: 49  ASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAAQSLL 108

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                            + ++    +        E       Q    I   +        
Sbjct: 109 PSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGDVDVG 167

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
              L  +    +P  L     +   +       N  K          R        ++  
Sbjct: 168 GSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDELKTA 227

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            E                       +                 +   +  V +  +  A 
Sbjct: 228 AE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTNAK 267

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                +     + +   T+++       L+          + +        S    + T 
Sbjct: 268 PAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTL 327

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +  G 
Sbjct: 328 IISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGF 387

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFFFGGG 483
            VD  I+V E I            +   G      T+   +++ +      +++    G 
Sbjct: 388 VVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGR 447

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFLIPDC 537
            +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++        
Sbjct: 448 LLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQGYGKS 507

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +       R  GV +    ++     +      +     G +  G+ A++ +    +R  
Sbjct: 508 LKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGK 567

Query: 598 LES 600
           L+ 
Sbjct: 568 LQD 570



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 273 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 332

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 333 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 392

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 393 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 449

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 450 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 485


>gi|318041301|ref|ZP_07973257.1| preprotein translocase subunit SecF [Synechococcus sp. CB0101]
          Length = 330

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/217 (27%), Positives = 107/217 (49%), Gaps = 7/217 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +    + L+    +      +L+ +   I  + P     +   +GP +  +L+R   V +
Sbjct: 117 DGGRSLELRLPDLEPEQTQTLLDGLTPLIGAVNP--AQLSVNTIGPSLGGQLLRSSAVSL 174

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI----EFNLTAVAAVLTL 729
           ++S   +  YI  R+   +A  A+  L  D+  T G FA  G+    E +     A++T+
Sbjct: 175 LVSFALIAAYISFRYDGIYAGLALLCLAHDVLITCGVFAWLGLLRGVEVDSLFAVALITV 234

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            GYSVND VVV+DR+R+  +     +   D +D +++ TL RS+YTS    + ++ + ++
Sbjct: 235 AGYSVNDTVVVFDRIREQRRE-VRDLGLSDQVDLAVDATLTRSLYTSFTTLLPLIALLLF 293

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           GG  +  FA+ +  GI V + SSI IA  +L  +   
Sbjct: 294 GGGSLFWFAVALTVGIGVGSWSSIGIAPTLLPLLARR 330


>gi|282897254|ref|ZP_06305256.1| SecD export membrane protein [Raphidiopsis brookii D9]
 gi|281197906|gb|EFA72800.1| SecD export membrane protein [Raphidiopsis brookii D9]
          Length = 468

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 137/525 (26%), Positives = 223/525 (42%), Gaps = 82/525 (15%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            +   +I+  ++  I +++ +P                   + LGLDL+GGS L ++V  
Sbjct: 5   RSVLALIIILLVAAIAVIVKIP-------------------VPLGLDLQGGSQLTIQVKP 45

Query: 63  ----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
                +     L+     +   +   G+    ++ +  +KI +        +     +  
Sbjct: 46  TEEIKEITERELEAVKKVVEGRINGLGVSEPIIQTVGKDKILVQLPGVNDPQQAEKVLGG 105

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q        D +                +     +V    I+   E +R+  D+  I+
Sbjct: 106 TAQLEFRLQKPDTE----------------TLLQSLRVSQLDIKSKQETLRKSKDENAIA 149

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
            +  +   +++ + +L    DP    + L                 +G  + V    D++
Sbjct: 150 ANQAELKKNYQAIAELFASTDPPLTGKYLKDAY---------GEPTQGNNWNVALRFDNE 200

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G     E   +++G          +     P V + F   G                   
Sbjct: 201 GGVLFAELTKQLAGTGRGIGIFLDNELISSPTVGVEFAATG------------------- 241

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         I  G A I+G F  E A  L   LR G+LP+ + I E R VGA LG
Sbjct: 242 --------------ITGGSAIITGRFQAEEANNLGVQLRGGALPVPVEIAERRTVGATLG 287

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            DSI     A + GL L+++FM+  Y   GL+AD S+ +  ILT A   LLG TLTLP I
Sbjct: 288 QDSIQSSIYAGIGGLALVLVFMVSYYRLPGLIADISLIIYSILTWATFCLLGVTLTLPGI 347

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG +L IG+AVD+N+L+ ER REE R  ++++ S++ GF RA+S+I DSN+T  IA   L
Sbjct: 348 AGFILSIGMAVDANVLIFERTREELRSGKTLYRSVESGFYRAFSSILDSNVTTWIACAAL 407

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           F+ G G V+GFA+T+ L + +SMFTAI+  R +M   I +   + 
Sbjct: 408 FWLGSGLVKGFALTLALGVGVSMFTAITCSRTLMFLAISFPSWRK 452



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 75/165 (45%), Gaps = 4/165 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ I+  I   I     +L+++   ++    L A  +LI+    T   F L G+ 
Sbjct: 283 GATLGQDSIQSSIYAGIGGLALVLVFMVSYYRLP-GLIADISLIIYSILTWATFCLLGVT 341

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++   +  +    ++          + +++
Sbjct: 342 LTLPGIAGFILSIGMAVDANVLIFERTREELR---SGKTLYRSVESGFYRAFSSILDSNV 398

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             +I+   +   G  ++  FA+ +A G+ V+  ++I  +  ++  
Sbjct: 399 TTWIACAALFWLGSGLVKGFALTLALGVGVSMFTAITCSRTLMFL 443


>gi|204929252|ref|ZP_03220395.1| multidrug resistance protein mdtB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204321796|gb|EDZ06995.1| multidrug resistance protein mdtB [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADDYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|121998655|ref|YP_001003442.1| acriflavin resistance protein [Halorhodospira halophila SL1]
 gi|121590060|gb|ABM62640.1| acriflavin resistance protein [Halorhodospira halophila SL1]
          Length = 1017

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/615 (13%), Positives = 178/615 (28%), Gaps = 40/615 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + V++  +   +GL     N L +  +D  P             LR  ++      
Sbjct: 9   RRPVFTVMVTLIAVTLGL-----NALDRLPVDLLPEIDYPT-------LRISTN--YPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + +           + Q  ++LSFA     E  A+ +   L  
Sbjct: 55  GPEEVESQIVEPIENAVAPVAGVERIESVSAEDQGDVSLSFAWGTELEAAANDIRERLDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +  +  L      +  +++   + +      IE       +  D++       
Sbjct: 115 IIRDLPDEADRPRLRFLDLSDRPVLVIGLSAE---LDPIELRSLAEDRIRDRLERVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    DP RLR    +   +       +            L        
Sbjct: 172 ALDIWGGLEREIEIAVDPGRLRAAQLSLEDVREAIADADFEVAAGRRAEGRLELGLRVPG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V D   +                                        +           
Sbjct: 232 RVTDLDAL-------------------QELPVARGDDGSLVRLGQLAQVRDTHEQETRRI 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      +    G++  +   T E        LR+    + L             S   
Sbjct: 273 RIDGEPGIRLAVRGRSDANTVATAERVRGELEQLRSELPQVSLTP-VRDTAVYIERSMQN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   L L+VL + +   +  +VA  +I ++++ T AL+   G TL L ++ GI 
Sbjct: 332 LGRAILLGGVLALVVLLIFLRDLRAAMVAAVAIPVSLVTTFALVYFAGFTLNLMTLGGIA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           LG+GL VD+ I+V E I     +  + F +   G       +  S +T L   V L F  
Sbjct: 392 LGVGLMVDNAIVVLESIMARRERGVAAFEAAVNGTLEVAPAVTASTLTTLAIFVPLIFLE 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G      A  +G ++  S+  A ++V  +   + +  +  +      +        +
Sbjct: 452 GIAGALFTQLAWVVGFALFGSLIVAFTVVPMLAARLPQRPEGVARVAWYRALERGYRLLL 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                R        + L  +    +            +G I++         L+ +   +
Sbjct: 512 GGVLTRRGAVMALATALVVLAVAIVPRLGTELMPGTDEGDIRMTFEWEPGASLAFMDERM 571

Query: 599 ESLQIGDISFQNFDG 613
            +++    +      
Sbjct: 572 RAIEQRAAAMVPEAE 586



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 79/238 (33%), Gaps = 4/238 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +    ++ +      +        L        ++VA    +    +++   +P 
Sbjct: 253 VRLGQLAQVRDTHEQETRRIRIDGEPGIRLAVRGRSDANTVATAERVRGELEQLRSELPQ 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            ++         I R +   G   ++   +A+++ +        A+ A   + + +  T 
Sbjct: 313 VSLTPVRDTAVYIERSMQNLGRAILLGGVLALVVLLIFLRDLRAAMVAAVAIPVSLVTTF 372

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                 G   NL  +  +   +G  V++ +VV + +   M      ++  +       E 
Sbjct: 373 ALVYFAGFTLNLMTLGGIALGVGLMVDNAIVVLESI---MARRERGVAAFEAAVNGTLEV 429

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                 +++      +P+    G     F   +A+ +  A   S+ +A  ++  +   
Sbjct: 430 APAVTASTLTTLAIFVPLIFLEGIAGALF-TQLAWVVGFALFGSLIVAFTVVPMLAAR 486



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 84/256 (32%), Gaps = 6/256 (2%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
               L +         V   +L ++  G+        ++  +  LQ         + V + 
Sbjct: 761  EELLDLTVPNRSGEPVALRSLVNVAEGESPLTIERRDRQRVTTLQANISGRDLGSVVADA 820

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              +     VP            + +  L +  +  ++  A+  ++   +       L  +
Sbjct: 821  RAELARVPVPRGYGWRIGGDYEEQAEALRQLTVTLLLAVALVYMVMASLYESLRNPLVVM 880

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             T+ L     +G     G   +  +   ++ L G  VN+ +++ DR     +        
Sbjct: 881  FTVPLAGVGVVGMLWATGTTISAQSFIGIILLAGIVVNNGILLVDRAN---RSLVRGAPP 937

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            R  +  +    L   + TS+   +++LP+A+    G       A  +  G++     ++ 
Sbjct: 938  RQAVLIAGRRRLRPVLMTSLTTGLALLPLALGIGEGAEAQAPMARAVLGGLITGTLITLV 997

Query: 815  IAAPILLFIYDWRAKN 830
            +   +    +  + + 
Sbjct: 998  VIPVVFTLFHTAKGRR 1013


>gi|330985320|gb|EGH83423.1| multidrug RND efflux transporter, permease MdtB [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 1036

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGGLRWVLRHQPLTLLAALATLALTVLLYIVVPKGFFPVQ 557



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.8 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I ++        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPETAIYEAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      + +R
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|262376730|ref|ZP_06069958.1| nodulation protein [Acinetobacter lwoffii SH145]
 gi|262308440|gb|EEY89575.1| nodulation protein [Acinetobacter lwoffii SH145]
          Length = 1035

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/536 (11%), Positives = 158/536 (29%), Gaps = 39/536 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP       +          +      
Sbjct: 9   KYPVFTIMMMFCLMVLGLAS-----WQRMGVEEFPDVDFPFVV---------IYTNYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +      +    +  + IT  F         A  V   +  
Sbjct: 55  SPETVESEITKKLEDQINTISGLKQVISQSSEGLSIITTEFNLDVTSTTAAQDVRDKIAS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   + ++ ++        +++      D         S  + ++ + Q+       
Sbjct: 115 VTAEFRDEIQEPIVERYDPTANAVMSIVFESDN--MDVKALSSYLDQRIVPQLRTVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  + +P +L+        +                             
Sbjct: 173 TVNLLGDAQRQIRIQVEPQKLQAFGIGVDSVINTLKAE--------------------NI 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V      SG        N          D+          F     NI    A +    
Sbjct: 213 EVPGGTLKSGNSELVIEINSKVLHPLAFGDLVIANKNGIPIFLRQVANIQDSQAELESAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L             +  +    ++ +      + A         V   +  +  G+   
Sbjct: 273 FLNGKTAVAIDILRSSDANVIEVVDKSYAALESIEAQLPQGTTLQVVVDSSKSIRGTIGD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VARTIIEGAVLAVLIVLLFLGSFRSTVITGLTLPIALLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHADMGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
              G     F +T+ +++LISMF + ++   +       KK  +     + RFF  
Sbjct: 453 GIIGRFFYQFGVTVSMAVLISMFVSFTLDPMLSAHWAEKKKDPNKKPGRVKRFFSW 508



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 75/220 (34%), Gaps = 8/220 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +             +    ++    ++   +T+Q        I   +       +  +
Sbjct: 282 IDILRSSDANVIEVVDKSYAALESIEAQLPQGTTLQVVVDSSKSIRGTIGDVARTIIEGA 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG  ++D
Sbjct: 342 VLAVLIVLLFLGSFRSTVITGLTLPIALLGTLTFIWAFGFSINMMTLLALSLSIGLLIDD 401

Query: 737 KVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+ +                 E     + T++      LP+A  GG +  
Sbjct: 402 AIVV----RENIVRHADMGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGIIGR 457

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               F + ++  ++++   S  +   +     + +    +
Sbjct: 458 FFYQFGVTVSMAVLISMFVSFTLDPMLSAHWAEKKKDPNK 497



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 82/276 (29%), Gaps = 9/276 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                  L        +                +   +   L S+   +         +  
Sbjct: 751  ETYDVNLRLTEDQRSLPSDLQNMYITSNKTDANNQPILVPLSSVAKFEEKLGASQINRRD 810

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            L R      ++  +            +         +       +      G     I+ 
Sbjct: 811  LAREVLVEANTSGRPAGDIGTDISRLQENFDMPPGYSFDTQGSNADMAESAGYALTAITL 870

Query: 678  IAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              + IYI +      +      + +L L +        LF    NL ++  ++ L+G   
Sbjct: 871  SIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFNSTMNLFSIIGIIMLMGLVT 930

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
             + +++ D ++   K         D I  +    L   + T+ A  + ++P+++    GG
Sbjct: 931  KNAILLIDFIK---KAMDRGEDRYDAIIAAGKTRLRPILMTTSAMVMGMVPLSLGLGEGG 987

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                  A  +  G++ +   ++ +   I  ++ D++
Sbjct: 988  EQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDFK 1023


>gi|308177524|ref|YP_003916930.1| protein-export membrane protein SecD [Arthrobacter arilaitensis
           Re117]
 gi|307744987|emb|CBT75959.1| protein-export membrane protein precursor SecD [Arthrobacter
           arilaitensis Re117]
          Length = 580

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 129/535 (24%), Positives = 212/535 (39%), Gaps = 66/535 (12%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL--EV 60
               L +L   I   G+L+A          +      P     L LDL GG+ ++L   V
Sbjct: 11  RKALLWLLIVFIIATGVLVA-------GAANGKTGWGP----KLALDLEGGTEMILAPRV 59

Query: 61  DEDDFV-NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             D+ +    L    + +R  +   G+    +     +  +        +   D +    
Sbjct: 60  QGDEAINQEQLDQAVEIIRQRVDGSGVSEPEITTQSGRNVVVSMPGTPDQTTRDLIQASA 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                                    ++++             +      +   +      
Sbjct: 120 NMEFR-------------------PVLITGGYAATPKEDRTPEKDLPKPEGKPE----NP 156

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
           +     +  +  +  G    + L+   G  A                        D+D  
Sbjct: 157 SDTNWITPELFQEFEGYDCETELKDRGGDAAD---------------PAKPMISCDTDMG 201

Query: 240 QYLVEDKVEISGIHLNGATAN-----FDPKTHKPVVDISFDEMGARRFFEVTRDNI---- 290
              +    EISG  +  A A          T + VV I FD  G + F + T+  I    
Sbjct: 202 VKYILGPQEISGDKIKDAYAQLARGVNGSVTGEWVVVIEFDAEGTKIFADTTQRLIALQG 261

Query: 291 -GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                A+VLDG  ++AP  N  I  G+ QISG FT E++  LA  L+ G+LPI  +I  E
Sbjct: 262 SQNQFAIVLDGETISAPTTNAVISDGRPQISGGFTQESSQALAEQLKYGALPISFDIQSE 321

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R V A LG+D +  G  A V GLVL+ ++ +  Y   GLV   S+ ++ +LT   L LLG
Sbjct: 322 RQVSATLGADQLTAGLIAGVIGLVLVFIYSLFQYRALGLVTIASLLVSGVLTYLCLVLLG 381

Query: 410 ATLT----LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             +     L  +AG+++ IGL  DS I+  ER+R+E R+ + +  ++D+G+ RA  TI  
Sbjct: 382 WGMNYRLSLAGVAGLIVAIGLIADSFIVYFERVRDELREGRPLASAVDVGWKRAKRTILA 441

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           S    ++A VVL+    G VRGFA T+GL+ +I +     +    ++ + R K  
Sbjct: 442 SKAVNVLAAVVLYIVAVGNVRGFAFTLGLTAIIDLVVVYGLTHPTLVLLARTKFF 496



 Score =  105 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/338 (10%), Positives = 94/338 (27%), Gaps = 19/338 (5%)

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
            I   +      Y     +              I+        + +G   +         
Sbjct: 161 WITPELFQEFEGYDCETELKDRGGDAADPAKPMISCDTDMGVKYILGPQEISGDKIKDAY 220

Query: 565 FTHGLNYGIDFKGGIQLGVLAN---RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                       G   + +  +     +     +  +      +      DGE       
Sbjct: 221 AQLARGVNGSVTGEWVVVIEFDAEGTKIFADTTQRLIALQGSQNQFAIVLDGETISAPTT 280

Query: 622 QYQPGDS--------VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                D           ++      + K   +     IQ+   V   +  + +  G++  
Sbjct: 281 NAVISDGRPQISGGFTQESSQALAEQLKYGALPISFDIQSERQVSATLGADQLTAGLIAG 340

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI----EFNLTAVAAVLTL 729
           +I  + + IY   +++    L  I +L++    T     L G       +L  VA ++  
Sbjct: 341 VIGLVLVFIYSLFQYR-ALGLVTIASLLVSGVLTYLCLVLLGWGMNYRLSLAGVAGLIVA 399

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG   +  +V ++R+R  ++           +D          + +     ++ + + + 
Sbjct: 400 IGLIADSFIVYFERVRDELRE---GRPLASAVDVGWKRAKRTILASKAVNVLAAVVLYIV 456

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               +  FA  +    ++       +  P L+ +   +
Sbjct: 457 AVGNVRGFAFTLGLTAIIDLVVVYGLTHPTLVLLARTK 494


>gi|148557637|ref|YP_001265219.1| acriflavin resistance protein [Sphingomonas wittichii RW1]
 gi|148502827|gb|ABQ71081.1| acriflavin resistance protein [Sphingomonas wittichii RW1]
          Length = 1028

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/611 (9%), Positives = 177/611 (28%), Gaps = 40/611 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L++ +   GL+        +  +++ P                   +V    
Sbjct: 10  RNPIPPIVLFAALTLAGLIS-----FARMDINQMPDISFPAA---------EVQVVQPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +         + +  +   + F      +   + V   +  
Sbjct: 56  APTEMETQITRRVEAAVASIGNVKSITSYVTEGTSGTNVEFHLGTPVDRAVNDVRDAVAK 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L     +  +     +   I         +     + S       I ++   +   
Sbjct: 116 IRAELPEGILEPTVQRLDVEGGPIAYYSIEGVDMTLE--QLSWFTDNTVIKRLQAIDGMA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    DP+R++    T ++++      N +  G    +     S     
Sbjct: 174 GVFRGGGVSREIRVILDPARMQAQGVTASQVNNILRNVNLNAAGGRAELAGAEQSVRVLG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+    ++                        R         +           
Sbjct: 234 NAASAYELGQTQISV--------------------GDGRTVRLADIATVRDSYGEQRQIS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +           S     + A  +   LR  +  I    +   +V         
Sbjct: 274 KMNGRQVLSIGIQKAKGASDVKVYDAAQKVLNELRKENPKITFKEL-FTSVIYTKEQYKS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   + L +IV+F  +   +  +++  +I L+ I     + L+G TL   S+  + 
Sbjct: 333 AIHAMVEGSVLAVIVVFFFLRDWRATMISALAIPLSAIPAFWFMDLMGFTLNTISLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L  G+ VD  I+  E I    R  ++ + +           +  + ++ +   + + F  
Sbjct: 393 LVAGILVDDAIVEIENIVRHMRMGKTAYQASMDAADEIGLAVVATTMSIVAVFLPVSFMP 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+ +++L+S+  A  I   +  + ++ + +K     P+   ++     
Sbjct: 453 GIPGQFFEQFGLTVAVAVLMSLAVARLITPMIAAYFLKAEGVKEHGGGPMMDKYIALLKW 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           ++           ++++ +I                    +++ +     V     +   
Sbjct: 513 SLVNRWKTIGIGVLALVVTIALFITSPQQFQPALDVDYSQVKIELTPGARVAQDTQKVAD 572

Query: 599 ESLQIGDISFQ 609
           E++ +     +
Sbjct: 573 ETIAVLRQQPE 583



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 89/253 (35%), Gaps = 8/253 (3%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G  Q+ V   R V L+ + +  +S        +    +   +   + +    V      +
Sbjct: 242 GQTQISVGDGRTVRLADIATVRDSYGEQRQISKMNGRQVLSIGIQKAKGASDVKVYDAAQ 301

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALG 695
            V  ++ +  P  T +           +  +  I  ++  S +A+++  +    W   + 
Sbjct: 302 KVLNELRKENPKITFKELFTSVIYTKEQ-YKSAIHAMVEGSVLAVIVVFFFLRDWRATMI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           +   + L       F  L G   N  ++ A+  + G  V+D +V  + +   ++      
Sbjct: 361 SALAIPLSAIPAFWFMDLMGFTLNTISLLALSLVAGILVDDAIVEIENI---VRHMRMGK 417

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
           +       + +E     V T+M+     LP++      G     F + +A  ++++ + +
Sbjct: 418 TAYQASMDAADEIGLAVVATTMSIVAVFLPVSFMPGIPGQFFEQFGLTVAVAVLMSLAVA 477

Query: 813 IFIAAPILLFIYD 825
             I   I  +   
Sbjct: 478 RLITPMIAAYFLK 490



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 68/165 (41%), Gaps = 7/165 (4%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI 716
             +   +LI   ++ V+   + +   + + + +       + +L+L     +    + G+
Sbjct: 831 EQEFQGDLISGFLIAVVSGILLVFAVLVLLYKRVLPPFVNMASLLLAPLGGVLALRIVGM 890

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             ++     +L L G    + +++ D   + M+      +  D I ++ ++     V TS
Sbjct: 891 PISMPVYIGLLMLFGIVAKNSILLVDFAIEEMR---HGANRFDAILEAAHKRAQPIVMTS 947

Query: 777 MAAFISVLPMAV--WGGSVIGS-FAIPMAFGIVVAASSSIFIAAP 818
           +A    ++P+A+   G S   S  A+ +  GI ++   ++ I   
Sbjct: 948 VAMIAGMVPIAIGLSGDSSWRSPMAVCVIGGIAMSTLLTLVIVPA 992


>gi|91224511|ref|ZP_01259773.1| hypothetical protein V12G01_17777 [Vibrio alginolyticus 12G01]
 gi|91190853|gb|EAS77120.1| hypothetical protein V12G01_17777 [Vibrio alginolyticus 12G01]
          Length = 1046

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/492 (10%), Positives = 134/492 (27%), Gaps = 36/492 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  +G +  L     Q  +  +P  +P   +                +
Sbjct: 9   QRPIFASMLSLLILIVGAISLL-----QLPVSEYPEVVPPTVVVT-------------AN 50

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   + +  +  L   +   E +     +   +    +T++FA     +    ++ 
Sbjct: 51  YPGANPKVIAETVATPLEQEINGTENMLYMFSQATSDGRMTLTVTFALGTDLDKAQVQIQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L    ++  +V         ++               +        D+I  
Sbjct: 111 NRVTTALPRLPEAVQRLGVVAEKASPDLTMVVHIYSPDSSREVSYLANYANLNLKDEIAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P  L     T   +       N        G +   + 
Sbjct: 171 LGGVGDVRLFGGDEYSMRLWLNPDELASRNLTVMDVVSAVRSQNQQVAAGSLGAQPAANE 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +  Q L+  K  +  I              +    +   +             +      
Sbjct: 231 NQFQVLLNVKGRLENID-------------EFNDIVVKVDETGALTRLKDVARVELGQNS 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L            +   +              L+A         +         
Sbjct: 278 YALRALLNGKPAVAMPVFQRPGANAIELSNQVRSTMDRLQAAFPAGVSYEIAYDPTVFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           GS      T      LV++V+ + +   +  ++   ++ +++I T A++ +LG ++   S
Sbjct: 338 GSIDAVVHTLLEAIVLVVVVVILFLQTWRASIIPIIAVPVSLIGTFAVMQMLGVSINTLS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +        +   +     +     I    +      + 
Sbjct: 398 LFGLVLAIGIVVDDAIVVVENVERNIHNGLAPLEATKQAMTEVTGPIIAIALVLCAVFIP 457

Query: 477 LFFFGGGAVRGF 488
             F  G + + +
Sbjct: 458 TTFITGLSGQFY 469



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 49/148 (33%), Gaps = 7/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    I  + + I   L      G + N+    A++ L+  +  + +++ +  ++  
Sbjct: 903  SLKLPFAIILIVPMTIFSALAGVWFIGGDNNIFTQIALIVLVALACKNAILMVEFAKE-- 960

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             L          I ++    L   + TS+A    V+P+ + G          M   +   
Sbjct: 961  -LKDNGQDTLSAILEACRLRLRPILMTSIAFTAGVIPLMI-GTGAGAEMRQAMGIAVFSG 1018

Query: 809  AS-SSIF--IAAPILLFIYDWRAKNARI 833
                ++F  +  P+   +     K   +
Sbjct: 1019 MVGVTVFGLLLTPVFYMLVSRNKKRQTL 1046


>gi|331014327|gb|EGH94383.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. lachrymans str. M302278PT]
          Length = 1036

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/583 (10%), Positives = 159/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    ++   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQMQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I          +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPRLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       A +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLADVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   ++ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLRSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRNQAVLLNIQRQPGANVIDVVDRIKALLPGITDNLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPMQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEDQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y    KG   + 
Sbjct: 515 DIYAGRLRWVLKHQPLTLLVALATLALTVLLYIAVPKGFFPVQ 557



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIVLVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPMQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.5 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I ++        + T++AA     P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPETAIYEAALLRFRPILMTTLAALFGAFPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   ++F    I L+      + +R
Sbjct: 997  LLSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|256422587|ref|YP_003123240.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
 gi|256037495|gb|ACU61039.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
          Length = 1060

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/575 (11%), Positives = 159/575 (27%), Gaps = 46/575 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  ++  +G+L        +  L +FP   P               + +   
Sbjct: 7   QRPVLATVISIIMVILGILGLW-----KLPLQKFPDIAPPA-------------VQVTAL 48

Query: 62  EDDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                   +       L   +   E +   +     +    I++ F      +  A  V 
Sbjct: 49  YPGANAETILRSVAPSLEEAINGVENMIYMNSTASNDGSLVISVYFKLGTDPDQAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIG 175
             +    ++L  +  +  + T  ++   +++     +          +       I  I 
Sbjct: 109 NRVAQATAQLPAEVVQAGITTAKQQNSLLMVVDMYSEDPKVYDQTFLANYAQINIIPDIK 168

Query: 176 ISESTIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                 Q L         +    +P ++        ++       +       FG     
Sbjct: 169 RIPGVGQALIFGGNKDYSMRVWLNPKQMAAYNLAPKEVMAAIQDKSLEAAPGKFGE---S 225

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            ++  +Y+++ K +++             K       +                 +    
Sbjct: 226 STESFEYVIKYKGKLT-------------KPEDYENIVIKSNGDGSFLRLKDVARVEFGA 272

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
               +   +             A  + N                       ++       
Sbjct: 273 YTYGNYTRVNGKPGVNIASFQLAGSNSNEIQIAIMKFMEKASKDFPKGVKYLILYNTKDT 332

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S    K T      LV IV+F+ +   +  L+   ++ + ++ T   +SLLG ++ L
Sbjct: 333 LDLSIEQVKHTLIEAFILVFIVVFIFLQDFRSTLIPAIAVPVAIVGTFFFISLLGFSINL 392

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITA 470
            ++  +VL IG+ VD  I+V E +  +  K      +         S A  +I       
Sbjct: 393 LTLFALVLAIGIVVDDAIVVVEAVHSKMEKKHLPPKAATVSAMSEISGAIVSITLVMSAV 452

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLS 529
            +    +    G   R FA T+ ++I+IS   A+++  A+   F+           +  +
Sbjct: 453 FLPVGFMEGSTGVFYRQFAFTLAIAIVISAVNALTLSPALAALFLKETHHGPHESTHKAT 512

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                       F R     V             +
Sbjct: 513 FKEKFFAGFNKGFDRMTSKYVNSLRFLIRHKWVSI 547



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 84/239 (35%), Gaps = 10/239 (4%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +        +   Q    +S      +    +K ++  P     
Sbjct: 264 DVARVEFGAYTYGNYTRVNGKPGVNIASFQLAGSNSNEIQIAIMKFMEKASKDFPKGVKY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                        I +    +I + I + I ++I    +   L     + + I  T  F 
Sbjct: 324 LILYNTKDTLDLSIEQVKHTLIEAFILVFIVVFIFLQDFRSTLIPAIAVPVAIVGTFFFI 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  IG  V+D +VV + +    K+    +  +     +++E  G 
Sbjct: 384 SLLGFSINLLTLFALVLAIGIVVDDAIVVVEAVH--SKMEKKHLPPKAATVSAMSEISGA 441

Query: 772 SVYTSMAAFISVLPM---AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  S+   +S + +    + G + +    FA  +A  IV++A +++ ++  +      
Sbjct: 442 IV--SITLVMSAVFLPVGFMEGSTGVFYRQFAFTLAIAIVISAVNALTLSPALAALFLK 498



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 59/174 (33%), Gaps = 11/174 (6%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
             E+   G   +I S   + +Y  +      +   L  I ++   I           I  N
Sbjct: 869  EEISSSGQSVIIFSLCLLFVYFLLAAQYESYILPLAVILSIPTGILGVFLSIRFTDISNN 928

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMA 778
            +    A++ LIG    + +++     +          +      ++    L   + TS+A
Sbjct: 929  IYVQVALVMLIGLLAKNAILIV----EYASQRRKAGKNLVFAAIEAARLRLRPILMTSLA 984

Query: 779  AFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              + ++PM    G       S +I  A G+V      +F+   + +     + K
Sbjct: 985  FVVGLIPMMSDNGPSAIGNHSISIGAAGGMVSGVILGLFVIPVLFVMFQYLQEK 1038


>gi|254562500|ref|YP_003069595.1| multidrug efflux system protein [Methylobacterium extorquens DM4]
 gi|254269778|emb|CAX25751.1| multidrug efflux system protein (acrB ou acrF) [Methylobacterium
           extorquens DM4]
          Length = 1054

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/602 (13%), Positives = 171/602 (28%), Gaps = 43/602 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L       PQ  + ++P   P               + L    
Sbjct: 8   RPVFAWVVALFILLGGALSI-----PQLPIAQYPIIAPPA-------------IALSTSY 49

Query: 63  DDF-VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
               V       +  +   L      +       +    +IT SF           +V  
Sbjct: 50  PGASVENLYTGTTRLIEDELNGAANILSFESASDSFGVVEITASFQPGTDPGYAGVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  ++       ++ +         +  +     +IR  I++I   
Sbjct: 110 RLKRVEARLPAEVRQQGILVEEASAATLNIITLVSTDGKTDEVGLGDFLIRNVINEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +LR L    A ++      N        G +   +  
Sbjct: 170 PGVGRATLY-STERALRIWIDPDKLRGLSLNAADVTKAIGRQNVQIASGAVGAQPSPERH 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              +     + + G            +       +                 I       
Sbjct: 229 AVNF----PIIVKGQ---------MTEPEAFGAIVLRANPDGSNVRLRDVARIELGGDDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +   T +        L           +      A   
Sbjct: 276 KFTTRLNGGPAAGISVTLAPDGNAIETAKAIRAKMVELSQFFPDTVKWDIPYDITPAVDA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + + +  T  ++ L G ++ + ++
Sbjct: 336 SIEKVLHTLVEAVVLVFVVMFVFLQNIRYTLIPTIVVPIALFGTCTVMLLAGFSVNVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    N +      +     S+    I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMNEEGLPPKEATRKAMSQITGAIIGITLVLIAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
           + FF G      R F+I M  SI  S   A+S+  A+   +     K            F
Sbjct: 456 MAFFPGSVGIIYRQFSIAMVTSIAFSALLALSLTPALCATMLKPIEKGHGHAKGGVFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
               D    ++ R   W +  S    +  + L+      +    +G + L       VD+
Sbjct: 516 NRFVDRETARYGRGVAWFIRKSGRVMLIYLVLVAGVAYAFMRLPEGFLPLEDQGFFTVDI 575

Query: 592 SV 593
             
Sbjct: 576 QT 577



 Score = 67.4 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 55/133 (41%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + L     + + +  T     L G   N+  +  ++  IG  V+D +VV + +     
Sbjct: 362 IRYTLIPTIVVPIALFGTCTVMLLAGFSVNVLTMFGMVLAIGILVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +  ++   K++++  G  +  ++      +PMA + GSV      F+I M   I 
Sbjct: 420 MNEEGLPPKEATRKAMSQITGAIIGITLVLIAVFIPMAFFPGSVGIIYRQFSIAMVTSIA 479

Query: 807 VAASSSIFIAAPI 819
            +A  ++ +   +
Sbjct: 480 FSALLALSLTPAL 492



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 75/232 (32%), Gaps = 9/232 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              V   +   + +         +G      F+G ++  +     PG +   T        
Sbjct: 784  YSVKNAQGTMVPMSSFADLKWGVGPAQIIGFNGYQSVRITGDPAPGYTSGDTIKEMERLM 843

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                           +   +   +      + V+I  + +     +   W   +  +  +
Sbjct: 844  TFLPKGFGYAWTGQSLQEKEAGSQASLLLALSVLIVFLCLA---ALYESWSIPISVLLVI 900

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L +  ++    L G+  ++     ++T+IG S  + +++ +  R   K      +    
Sbjct: 901  PLGVIGSVAAVYLRGMPNDVYFKIGLITIIGLSAKNAILIVEFARDLWK---PGTNIVQA 957

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAA 809
              ++        V TS+A    V+P+A+  G+   S       +  G++ A 
Sbjct: 958  TIQAATLRFRPIVMTSLAFIFGVVPLAIATGASSKSQQAIGTGVMGGMISAT 1009


>gi|16331291|ref|NP_442019.1| cation or drug efflux system protein [Synechocystis sp. PCC 6803]
 gi|1001463|dbj|BAA10089.1| cation or drug efflux system protein [Synechocystis sp. PCC 6803]
          Length = 1083

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 82/573 (14%), Positives = 156/573 (27%), Gaps = 42/573 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N     +   +I  +G +          + D  P  +      +G D +          
Sbjct: 11  KNPVLTTVCTIVIILLGAIALP-LLPLAKLPDMAPKQVQVTTNYVGSDAQ---------- 59

Query: 62  EDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQ---NKITLSFADSRFKENIADKVTL 117
                   +   +  L   +   E +   +        + I + F     +      V  
Sbjct: 60  ------TAVDNVTTVLERQINGTEQVIYMNSTTDNTGTSTINVYFPVEMDRNIAQVLVQN 113

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-----VISHAIEQSMEIIRQRID 172
            +    S L     +  + T T+     +      +       I   I  S  + R  +D
Sbjct: 114 NVAIAASSLPEVVNRQGVTTQTQSPSVTIAYGVYSENDDQGKPIYDDIFVSNFVDRVLLD 173

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           +I   +     +        +    DP  L     T A ++      N         +  
Sbjct: 174 EIKRIDGVGSAILIGASEYAMRFWLDPDALAARDLTAADVTNAIRSQNIQVGVGGVNLPP 233

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
           + D    Q         +                +    +                    
Sbjct: 234 VTDQQRFQINARALSRFT-------------TPEEAEQIVVKVGDDGTLIRIKDVGRATI 280

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                +   +         +       +   T        A LR    P     V   N 
Sbjct: 281 GTQNYIQTALFNNAPAVAFVIYQLPGTNALDTANMVKEKMAELRPLFPPGLNAEVALDNT 340

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S      T      LV++V+F+ +   +  L+   +I +++I  +A     G +L
Sbjct: 341 LFVTASLEEAALTLIEAILLVILVIFIFLQNWRTTLIPALAIPVSLIGAMAFALAFGFSL 400

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITAL 471
              ++ G++L  GL VD  ILV E I  +  +    F +            I  S +   
Sbjct: 401 NQLTLFGVILATGLVVDDGILVVEAIEVKLDQGMKPFQAALDAMGELTGAVISTSLVLMA 460

Query: 472 IATVVLFFFGGGA--VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           +   V FF G      + FA+ M  ++ +S F AIS   +M   ++R KK     +    
Sbjct: 461 VFIPVTFFPGTTGIVYKQFAVIMASAVAVSTFNAISFSPSMSAILMRPKKEVHGPLAWFF 520

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
             F        +        +    L +I    
Sbjct: 521 NLFNRTFDWLKERYGNIITAILKVRLLAIPIFI 553



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 85/244 (34%), Gaps = 7/244 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + +  V       Q    +    +      V  Q    +++    +++    ++  + P 
Sbjct: 270 IRIKDVGRATIGTQNYIQTALFNNAPAVAFVIYQLPGTNALDTANMVKEKMAELRPLFPP 329

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                  +         + +  + +I + + +++ I+I  + W   L     + + +   
Sbjct: 330 GLNAEVALDNTLFVTASLEEAALTLIEAILLVILVIFIFLQNWRTTLIPALAIPVSLIGA 389

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           + F   FG   N   +  V+   G  V+D ++V + +          +        ++ E
Sbjct: 390 MAFALAFGFSLNQLTLFGVILATGLVVDDGILVVEAI---EVKLDQGMKPFQAALDAMGE 446

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  + TS+      +P+  + G+       FA+ MA  + V+  ++I  +  +   + 
Sbjct: 447 LTGAVISTSLVLMAVFIPVTFFPGTTGIVYKQFAVIMASAVAVSTFNAISFSPSMSAILM 506

Query: 825 DWRA 828
             + 
Sbjct: 507 RPKK 510



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 72/237 (30%), Gaps = 21/237 (8%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                +           A     + +         +               EL   G   +
Sbjct: 824  TNFNIYPAVDVQASPAAGYSTGQAMATMERLSKEMFPDSIGYAWYGTGYEELQSAGAAPI 883

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGF------------FALFGIEF 718
            I     +++++ +      +      + T+ L I   +G                  +  
Sbjct: 884  IFGLAFIMVFLVLSAQYESYVDPAIIMMTVPLAILGAIGAILLRANFMVATNMVWPTVNN 943

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            N+ A  A++ LIG +  + +++ +      +     +        +  E +   + T+++
Sbjct: 944  NVYAQVALVMLIGLASKNAILIVEF---GNQAMDLGMKIPQAAAFAAKERMRPILMTAIS 1000

Query: 779  AFISVLPMAV-WGGSVIG--SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +   P+ +  G   +   S    +  G +++   S+F+   +   + +  A+  +
Sbjct: 1001 GLVGFWPLVIASGAGAMSRWSLGTAIFGGYLISTILSLFLVPVLYTLVKEAEARFLK 1057


>gi|262040103|ref|ZP_06013357.1| multidrug RND efflux transporter [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042548|gb|EEW43565.1| multidrug RND efflux transporter [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/586 (9%), Positives = 155/586 (26%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAIPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +       N +                    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAITSANVNSAKGSLDGPA---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                ++ +       G  
Sbjct: 234 ----------RAVTLSANDQMQSAEDYRRLIIAYQNGAPIRLGDVASVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   +       K+ +    +      +I 
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERFFERVIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                         + + +  S  ++ ++    +  G        +
Sbjct: 524 VYGRWLSRVLNHPWLTLGVALSTLALSIILWVFIPKGFFPIQDNGI 569



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 73/214 (34%), Gaps = 12/214 (5%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----- 666
              +   + +  Q           + +++ + ++           V    +  +      
Sbjct: 283 WANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRD 342

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + I+ + M+IY+++R      +     + L +  T           N   + A+
Sbjct: 343 TQFELMLAIALVVMIIYLFLR-NVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMAL 401

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G+ V+D +VV + +    +             K   E     +  + +    ++P+
Sbjct: 402 TIATGFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPL 458

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G   G +   FA+ +A  I+++A  S+ +  
Sbjct: 459 LFMGDIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|320086561|emb|CBY96332.1| Multidrug resistance protein mdtB Multidrug transporter mdtB
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLDDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|238753043|ref|ZP_04614499.1| Multidrug resistance protein mdtB [Yersinia rohdei ATCC 43380]
 gi|238708741|gb|EEQ01003.1| Multidrug resistance protein mdtB [Yersinia rohdei ATCC 43380]
          Length = 1055

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/542 (11%), Positives = 146/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPNDLPYPPIYSKVNPADPPILT-LAVTSTAVPMTQVEDMVETRIAQRISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEDYRDLIVAYQNGAPIRLRDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           +          S S  
Sbjct: 284 ANTQQAIVLNIQRQPGVNVIETADSIREMLPELIKSLPKSVDVKILTDRTTTIRASVSDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L++I T A +  +G ++   ++  + +
Sbjct: 344 QFELMLAIVLVVMVIYLFLRNAAATIIPSIAVPLSLIGTFAAMYFMGFSVNNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWIIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 83/243 (34%), Gaps = 12/243 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           ++A +      +R      Q  + +           + L  Q    V      + +++ +
Sbjct: 254 IVAYQNGAPIRLRDVATIEQGAENNKLAAWANTQQAIVLNIQRQPGVNVIETADSIREML 313

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAI 697
            E++          +    +  +          + + I  + M+IY+++R      +   
Sbjct: 314 PELIKSLPKSVDVKILTDRTTTIRASVSDVQFELMLAIVLVVMVIYLFLR-NAAATIIPS 372

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + L +  T       G   N   + A+    G+ V+D +VV + +    +        
Sbjct: 373 IAVPLSLIGTFAAMYFMGFSVNNLTLMALTIATGFVVDDAIVVIENI---SRYIEKGEKP 429

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
            D   K   E     +  + +    ++P+   G   G +   FA+ +A  I+++A  S+ 
Sbjct: 430 LDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLT 489

Query: 815 IAA 817
           +  
Sbjct: 490 LTP 492



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 74/200 (37%), Gaps = 6/200 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +  V +    I   + I           +  +   +  +I S +AM I + + ++ + 
Sbjct: 830  EAVNAVTQAEKTIGLPADITTRFQGSTLAFQAALGGTLWLIIASIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPITILSTLPTAGVGALLALMLTGHELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DHGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGAGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRA 828
               ++F    I L       
Sbjct: 1008 QVLTLFTTPVIYLLFDKLAR 1027


>gi|168242204|ref|ZP_02667136.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194447453|ref|YP_002046179.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197247707|ref|YP_002147088.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197262695|ref|ZP_03162769.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|226700678|sp|B5EXV7|MDTB_SALA4 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|226700682|sp|B4T9U1|MDTB_SALHS RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|194405757|gb|ACF65976.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197211410|gb|ACH48807.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240950|gb|EDY23570.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|205338257|gb|EDZ25021.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|170742622|ref|YP_001771277.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Methylobacterium sp. 4-46]
 gi|168196896|gb|ACA18843.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium sp. 4-46]
          Length = 1053

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 90/687 (13%), Positives = 191/687 (27%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC  G L       P   + ++P   P               + L    
Sbjct: 8   RPVFAWVVALFICLGGALTI-----PLLPVAQYPIIAPP-------------SIALSTAY 49

Query: 63  DDF-VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN----KITLSFADSRFKENIADKVTL 117
               V       +  +   L              +    +IT +F         A +V  
Sbjct: 50  PGASVEDLYTGTTRLIEDELNGAANIQSFESASDSFGVVEITANFEPGTDPGYAAVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L  + ++  ++       ++ +            +     +IR  I++I   
Sbjct: 110 RLKRVEARLPAEVRQQGILVEEASAATLNIITLVSTDGSMDEVALGDFLIRNVINEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP +LR L  + + ++      N        G +      
Sbjct: 170 PGVGRATLY-STERSLRIWVDPDKLRGLSLSASDVTRAIQNQNAQIASGAVGAQPSPAGH 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V   + + G               +    +                 I       
Sbjct: 229 A----VNTPIIVKGQ---------MRAPEEFGAIVLRANPDGSTVRLRDVARIELGGEDY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +   T +        L           +      A   
Sbjct: 276 KFTTRLNGGEAAGISVTLAPDGNALETAKAIRAKMEELSQFFPSNVKWDIPYDITPAVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + + ++ T  ++ L G ++ + ++
Sbjct: 336 SIKKVMMTLVEAVVLVFVVMFLFLQNIRYTLIPTIVVPIALLGTCTVMLLAGFSVNVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL IG+ VD  I+V E +    N +  S   +     S+    I    +  +   + 
Sbjct: 396 FGMVLAIGILVDDAIVVVENVERIMNEEGLSPKEATRKAMSQITGAIVGITLVLVAVFIP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRF 531
           + FF G      R F+I M  SI  S   A+S+  A+   +     K            F
Sbjct: 456 MAFFPGSVGIIYRQFSIAMVTSIAFSAVLALSLTPALCATMLKPIEKGHGHAKGGVFGWF 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             + +    ++ R   W +  +       + L+      +    +G + +       VD+
Sbjct: 516 NRVVERETERYGRGVRWTIAKAGRMMAIYLILVAGVAFAFVRLPEGFLPVEDQGFFTVDI 575

Query: 592 -----SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                +     L +++  +       G     V   +        T    +  K  ++  
Sbjct: 576 QTPPGASFNRTLAAVKAVEEHLMAQPGVATVTVVNGFSFSGQGQMTSQAFVTLKDWSQRG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
           P  +         K         I  +
Sbjct: 636 PDQSAAALVAGTNKALASYKDAVIQAL 662



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 56/133 (42%), Gaps = 5/133 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + L     + + +  T     L G   N+  +  ++  IG  V+D +VV + +     
Sbjct: 362 IRYTLIPTIVVPIALLGTCTVMLLAGFSVNVLTMFGMVLAIGILVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S ++   K++++  G  V  ++      +PMA + GSV      F+I M   I 
Sbjct: 420 MNEEGLSPKEATRKAMSQITGAIVGITLVLVAVFIPMAFFPGSVGIIYRQFSIAMVTSIA 479

Query: 807 VAASSSIFIAAPI 819
            +A  ++ +   +
Sbjct: 480 FSAVLALSLTPAL 492



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 83/253 (32%), Gaps = 7/253 (2%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                 L           V  ++   L       Q         VR+  +P         +
Sbjct: 777  NPSDLLNYGVKNQQGTMVPMASFADLTWSVGPAQIIGFNGYQSVRITGEPAAGYTSGEAI 836

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
              +++ +T++        T     +         ++ + +  I  L    +   W   L 
Sbjct: 837  AEMERLMTQLPKGFGYTWTGQSLQEKQAGSQATLLLALSV-LIVFLCLAALYESWSIPLS 895

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             +  + L +  ++    L  +  ++     ++T+IG S  + +++ +  R+  +  T   
Sbjct: 896  VMLVIPLGVVGSVVGVMLRDMPNDVYFKIGLITIIGLSAKNAILIIEFARELWRPGTR-- 953

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSS 812
               +   ++        V TS+A    V+P+A+  G+   S       +  G++ A   +
Sbjct: 954  -LVEATVEAARLRFRPIVMTSLAFIFGVVPLAIAVGAASKSQQAIGTGVMGGMISATVLA 1012

Query: 813  IFIAAPILLFIYD 825
            + +     + +  
Sbjct: 1013 VILVPVFFVVVMR 1025


>gi|254252770|ref|ZP_04946088.1| Cation/multidrug efflux pump [Burkholderia dolosa AUO158]
 gi|124895379|gb|EAY69259.1| Cation/multidrug efflux pump [Burkholderia dolosa AUO158]
          Length = 1037

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/542 (12%), Positives = 151/542 (27%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAVTSKTLPLTQVQDLTDTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++      +                      R         +         G  
Sbjct: 229 INANDQLTSADQYDSA--------------VVAYKNGRPVMLTDVAKVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +          +   +   T++        L+          +          +    
Sbjct: 275 VNSEPAIILNVQRQPGANVIQTVDAIKAQLPKLQETLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELMLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAALLRHSPPPESHRFEARVHRAIDWVIA 514

Query: 540 IQ 541
             
Sbjct: 515 RY 516



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++   
Sbjct: 245 VVAYKNGRPVMLTDVAKVVAGSENTKLGAWVNSEPAIILNVQRQPGANVIQTVDAIKAQL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     ++++   +++ +++     +A +    
Sbjct: 305 PKLQETLPAALDVQIVTDRTTMIRAAVRDVQFELMLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLAGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSGL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAIVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                RD I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPRDAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|153005840|ref|YP_001380165.1| acriflavin resistance protein [Anaeromyxobacter sp. Fw109-5]
 gi|152029413|gb|ABS27181.1| acriflavin resistance protein [Anaeromyxobacter sp. Fw109-5]
          Length = 1028

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/522 (14%), Positives = 155/522 (29%), Gaps = 40/522 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L   +   GL+       P+  +D+ P                    +L   
Sbjct: 9   RRPIFTSMLLLAVVVFGLVA-----YPRIGVDQMPEVDFPIVT---------VTTILPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + V   L    +E  + L           +  + + L F  S   +  A  V   +Q 
Sbjct: 55  DPETVEENLSKPLEEALNTLSGLDTLRSQNFESISMVVLRFDLSVPVDVAAQDVRDKVQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +  ++       + IV    +    I      +     +    +   +   
Sbjct: 115 TLSQLPKEIETPVVQKLDLGAMPIVQLALSGPVPIQELTRIAE---DELKPGLQRLQGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    DP RLR        +S      +    G       L      + 
Sbjct: 172 SIDVVGGREREINVVVDPVRLRSYGLAATDVSQAISAQSIDVPGGRMLEPGLERVVKLET 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+                     D+     G ++       ++           
Sbjct: 232 EARSVEEL--------------------RDLVVASPGGKQIRVRDVADVVDGPGEARSSA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +   ++  +     E      A L           V   N     GS S 
Sbjct: 272 TLDGRSAVALVVRKQSGANTVEVAERVKADLAALAQRLPEGSKLEVVTDNSKFIRGSISA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I A L ++V+ + +   +  +V+ F++  +V+ T A++  LG T    ++  + 
Sbjct: 332 VQHDLLIGAILAVLVVLVFLRDWRATIVSAFALPTSVVGTFAVMHALGFTFNTVTMLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDM---GFSRAYSTIFDSNITALIATVVLF 478
           L IGL +D  I+V E I     K +    +        + A   +  S I   I    + 
Sbjct: 392 LSIGLLIDDAIVVIENIVRHLEKGERPREAALNGTGQIALAVLAVTLSVIAVFIPVAFMK 451

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              G     F +T+ +++ IS F ++++   M   ++     
Sbjct: 452 GMVGRFFFQFGVTVAVAVAISYFVSMTLTPMMSARLLAKHGH 493



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 79/232 (34%), Gaps = 12/232 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR   + +     +  +   +    V L  +         V E VK  +  +       +
Sbjct: 254 VRDVADVVDGPGEARSSATLDGRSAVALVVRKQSGANTVEVAERVKADLAALAQRLPEGS 313

Query: 654 TEIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
              V    S+ + R  I  V     I + +A+L+ +     W   + +   L   +  T 
Sbjct: 314 KLEVVTDNSKFI-RGSISAVQHDLLIGAILAVLVVLVFLRDWRATIVSAFALPTSVVGTF 372

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                 G  FN   + A+   IG  ++D +VV + +   ++        R+       + 
Sbjct: 373 AVMHALGFTFNTVTMLALTLSIGLLIDDAIVVIENI---VRHLEKGERPREAALNGTGQI 429

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
               +  +++     +P+A   G V      F + +A  + ++   S+ +  
Sbjct: 430 ALAVLAVTLSVIAVFIPVAFMKGMVGRFFFQFGVTVAVAVAISYFVSMTLTP 481



 Score = 46.6 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 64/166 (38%), Gaps = 9/166 (5%)

Query: 673  VIISAIAMLIYIWIR--FKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + +    +LIY+ +   F+     +  + +L L +   +    L     ++ A+  ++ L
Sbjct: 851  IALFLGIVLIYMILAAQFESLLDPVTIMLSLPLAVIGAIAALLLANEFMSMLAMIGMIML 910

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
             G    + +++ +      +L     S  + + ++    L   + TS+A    ++P+A  
Sbjct: 911  AGLVTKNGILIVEF---TNQLRAEGRSTLEALLEAGPLRLRPILMTSIAMIAGMVPVAFA 967

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +    A  +  G+  +   ++ +   +   +   R +  R
Sbjct: 968  RGDGAEMRTGMAWAIIGGLAASTVLTLVVVPVVYALLDGLRRRLVR 1013


>gi|161613188|ref|YP_001587153.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|189081606|sp|A9N7L2|MDTB_SALPB RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|161362552|gb|ABX66320.1| hypothetical protein SPAB_00897 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|22125282|ref|NP_668705.1| multidrug efflux system subunit MdtC [Yersinia pestis KIM 10]
 gi|45442489|ref|NP_994028.1| multidrug efflux system subunit MdtC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808282|ref|YP_652198.1| multidrug efflux system subunit MdtC [Yersinia pestis Antiqua]
 gi|108811452|ref|YP_647219.1| multidrug efflux system subunit MdtC [Yersinia pestis Nepal516]
 gi|149365312|ref|ZP_01887347.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis CA88-4125]
 gi|162420761|ref|YP_001607465.1| multidrug efflux system subunit MdtC [Yersinia pestis Angola]
 gi|165925978|ref|ZP_02221810.1| multidrug resistance protein MdtC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937145|ref|ZP_02225710.1| multidrug resistance protein MdtC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008367|ref|ZP_02229265.1| multidrug resistance protein MdtC [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212493|ref|ZP_02238528.1| multidrug resistance protein MdtC [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399666|ref|ZP_02305190.1| multidrug resistance protein MdtC [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421211|ref|ZP_02312964.1| multidrug resistance protein MdtC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424691|ref|ZP_02316444.1| multidrug resistance protein MdtC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167469859|ref|ZP_02334563.1| multidrug resistance protein MdtC [Yersinia pestis FV-1]
 gi|218929912|ref|YP_002347787.1| multidrug efflux system subunit MdtC [Yersinia pestis CO92]
 gi|229838424|ref|ZP_04458583.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895412|ref|ZP_04510584.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Pestoides
           A]
 gi|229898991|ref|ZP_04514135.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901711|ref|ZP_04516833.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Nepal516]
 gi|270489905|ref|ZP_06206979.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Yersinia pestis KIM D27]
 gi|294504584|ref|YP_003568646.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Z176003]
 gi|60390137|sp|Q8ZCV9|MDTC_YERPE RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|122383075|sp|Q1C5L9|MDTC_YERPA RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|122384947|sp|Q1CK61|MDTC_YERPN RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|226700787|sp|A9QZU8|MDTC_YERPG RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|21958156|gb|AAM84956.1|AE013741_3 hypothetical protein y1384 [Yersinia pestis KIM 10]
 gi|45437354|gb|AAS62905.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108775100|gb|ABG17619.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Nepal516]
 gi|108780195|gb|ABG14253.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Antiqua]
 gi|115348523|emb|CAL21461.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis CO92]
 gi|149291725|gb|EDM41799.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis CA88-4125]
 gi|162353576|gb|ABX87524.1| multidrug resistance protein MdtC [Yersinia pestis Angola]
 gi|165915008|gb|EDR33620.1| multidrug resistance protein MdtC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922182|gb|EDR39359.1| multidrug resistance protein MdtC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992749|gb|EDR45050.1| multidrug resistance protein MdtC [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206424|gb|EDR50904.1| multidrug resistance protein MdtC [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960700|gb|EDR56721.1| multidrug resistance protein MdtC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167052170|gb|EDR63578.1| multidrug resistance protein MdtC [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167056573|gb|EDR66342.1| multidrug resistance protein MdtC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681640|gb|EEO77734.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Nepal516]
 gi|229687936|gb|EEO80008.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694790|gb|EEO84837.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701567|gb|EEO89594.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Pestoides
           A]
 gi|262362421|gb|ACY59142.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis D106004]
 gi|262366570|gb|ACY63127.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis D182038]
 gi|270338409|gb|EFA49186.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Yersinia pestis KIM D27]
 gi|294355043|gb|ADE65384.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Z176003]
          Length = 1024

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/618 (11%), Positives = 157/618 (25%), Gaps = 33/618 (5%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +             +   + + +   +    +     +    
Sbjct: 28  GFSLLPVSPLPQVDYPVIM---------VSASMPGADPETMASSVATPLERALGRIAGVN 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +      +I L F  +R     A  V   L    S L                 + 
Sbjct: 79  EMTSTSSLGSTRIILQFDLNRDINGAARDVQAALNAAQSLLPSGMPSRPTYRKMNPSDAP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++    +        +       +   +I  +E           L  +  E +PS L   
Sbjct: 139 IMI-MTLTSDTFSQGQLYDYASTKLAQKIAQTEGVSDVTVGGSSLPAVRVELNPSALFNQ 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +       N  +                   ++                     
Sbjct: 198 GVSLDAVRQAISAANVRRPQGSVDAAETHWQVQANDEIKTA------------------- 238

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                N+   +  V +  +         + S +   +   T+
Sbjct: 239 -EGYRPLIVHYNNGSPVRLQDVANVIDSVQDVRNAGMSAGQPAVLLVISREPGANIIATV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        LRA         + +        S    + +  I   LV++V+F+ +  G+
Sbjct: 298 DRIRAELPALRASIPASIQLNIAQDRSPTIRASLDEVERSLVIAVALVILVVFIFLRSGR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ +++I T A + L G +L   S+  + +  G  VD  I+V E I       
Sbjct: 358 ATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFT 502
                +   G      T+   +I+ +   + L    G      R FA+T+ ++I IS+  
Sbjct: 418 VKPKVAALRGVREVGFTVLSMSISLVAVFIPLLLMAGLPGRLFREFAVTLSVAIGISLVI 477

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           ++++   M  +++R                L+                   ++  + S  
Sbjct: 478 SLTLTPMMCAWLLRSHPKGQQQRIRGFGKVLLAIQQGYGRSLNWALSHTRWVMVVLLSTI 537

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            L               Q        +      S     Q      Q    +        
Sbjct: 538 ALNVWLYISIPKTFFPEQDTGRMMGFIQADQSISFQSMQQKLKDFMQIVGADPAVDSVTG 597

Query: 623 YQPGDSVAQTRVLEMVKK 640
           +  G       +   +K 
Sbjct: 598 FTGGSRTNSGSMFISLKP 615



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 90/255 (35%), Gaps = 8/255 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V + ++S+Q    +  +       LV  +    + +A    +     
Sbjct: 246 VHYNNGSPVRLQDVANVIDSVQDVRNAGMSAGQPAVLLVISREPGANIIATVDRIRAELP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S   N         R  + +    ++I+   +++ ++I  +     L     
Sbjct: 306 ALRASIPASIQLNIAQDRSPTIRASLDEVERSLVIAVALVILVVFIFLRSGRATLIPAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +  + 
Sbjct: 366 VPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPKV 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+   
Sbjct: 423 AALRGVREVGFTVLSMSISLVAVFIPLLLMAGLPGRLFREFAVTLSVAIGISLVISL-TL 481

Query: 817 APILLFIYDWRAKNA 831
            P++           
Sbjct: 482 TPMMCAWLLRSHPKG 496



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     V++ +TE+   ST++       ++ +E ++  +  ++ +   
Sbjct: 803  TISFNLPDGGSLSEATAAVERAMTELGVPSTVRGAFAGTAQVFQETLKSQLWLIMAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     IS R+ I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALDAQRNGN--ISAREAIFQASLLRFRPIIMTTLAALFGALPLVLSSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+VV+   +++    I L+    R + ++
Sbjct: 981  PLGITIVGGLVVSQLLTLYTTPVIYLYFDRLRNRFSK 1017


>gi|182415622|ref|YP_001820688.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Opitutus
           terrae PB90-1]
 gi|177842836|gb|ACB77088.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family [Opitutus
           terrae PB90-1]
          Length = 1057

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/558 (10%), Positives = 155/558 (27%), Gaps = 29/558 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++ ++I  +G +        Q  +  +P  +P   +            V    
Sbjct: 9   KRPIFAGVVSTIIFLVGAISLW-----QLPVSEYPEVVPPTVVVR---------AVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               ++  +    ++  + ++                +T++F      +N   +V   + 
Sbjct: 55  NPKTISETVAAPLEQSINGVENSLYMSSQATSDGVMTLTVTFKVGTDLDNAQVQVQNRVA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               KL    ++  + TT      +++            I        Q  D +      
Sbjct: 115 QAEPKLPEVVRRLGITTTKTSPDLLMVVHLFSPDNRYDDIYVRNYASLQVRDVLARLPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +    DP+++     T +++       N        G +   ++   +
Sbjct: 175 GQVRIFGSGDYAMRVWLDPNKVAARGLTASEVVAAIREQNVQVASGAVGQQPNPNAISTE 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L+  +  ++                +    I        R        +    A     
Sbjct: 235 LLINTQGRLTTED-------------EFGAIIIKTGAHGERVQLRDVARVELGAADYALR 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L          +     +   T +        L+          +          S  
Sbjct: 282 SLLNNKPAVALPIAQLPGSNAIATSDAVRATMTELKKNFPEGLDYSIVYDPTIFVRESIR 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A++  LG ++   S+ G+
Sbjct: 342 AVVHTLLEAIVLVVLVVILFLQTWRASIIPLAAVPVSLVGTFAVMHALGFSINALSLFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD-SNITALIATVVLFF 479
           VL IG+ VD  I+V E +       ++ F +           I   + + + +     F 
Sbjct: 402 VLAIGIVVDDAIVVVENVERNIALGKTPFEATKQAMREVTGPIIATALVLSAVFIPTAFI 461

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
            G          + ++I   +    S+  +  +  +  +   +                 
Sbjct: 462 SGLTGQFYKQFAITIAISTIISAFNSLTLSPALSALLLRDHHAPKDWLTRGMDRSLGWFF 521

Query: 540 IQFMRARFWGVGISILFS 557
             F R   W         
Sbjct: 522 RPFNRFFEWSARKYSHGV 539



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            F+  FA+  I  + L  +  +G + L   E N+     ++ LIG +  + +++ +     
Sbjct: 903  FRLPFAVLLIVPMAL-FSAMVGLW-LTHGENNVFTQIGLMVLIGLAAKNAILIVEFA--- 957

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +K      S       +    L   + TS+A    V P+ V    G  +  +  + +  G
Sbjct: 958  LKRREEGESVVQAALDAARLRLRPILMTSIAFIAGVFPLVVSTGAGAEMRRAMGVAVFAG 1017

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++      +F+     + +     + 
Sbjct: 1018 MIGVTLFGLFLTPVFYVVLEKLGVRK 1043



 Score = 41.6 bits (95), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T       G   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLAAVPVSLVGTFAVMHALGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           L     +  +   +++ E  G  + T++    +V  
Sbjct: 425 L---GKTPFEATKQAMREVTGPIIATAL-VLSAVFI 456


>gi|71901426|ref|ZP_00683516.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Xylella fastidiosa Ann-1]
 gi|71728797|gb|EAO30938.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Xylella fastidiosa Ann-1]
          Length = 474

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 133/482 (27%), Positives = 231/482 (47%), Gaps = 36/482 (7%)

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
            +N  +  + +E+RS L  + IG   + R+  N I ++F D          +        
Sbjct: 1   ALNKRMDAFVEEVRSTLGSKRIGFRMVERRPDNTIRVTFDDDAHLNEARMVLFKE----- 55

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                  +  L  + +   +   +S+N + Q+ S A+EQ++  +R RI+++G++E  IQR
Sbjct: 56  -------QVGLSYSVSGNTLIARVSENELRQIASGAVEQNLTTLRNRINELGVAEPIIQR 108

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD------SD 237
            G  RI+++LPG QD +  ++L+G TA + F  V+  ++ +    G              
Sbjct: 109 QGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVRTGNIPPEARVYYIRGT 168

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV------------ 285
               L+  +V +SG  +  AT   D      V     +  G R                 
Sbjct: 169 NQPVLLNKRVIVSGDEMVNATVGVDENGMPAVNVTLSNAAGQRMLDYTQRNLYKLMSVVY 228

Query: 286 -----TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
                T   +       +  +         A   GK   +       A  L+ +LRAGSL
Sbjct: 229 IERIPTVSMVDGKEVRGVRLKEEALSPTRIAGVFGKNFRTTGLEKTEAENLSKLLRAGSL 288

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
              ++ VEE  +G  LG++++ +G  A+V   +  ++F  + Y  +G++   ++  N+++
Sbjct: 289 AAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTIYYRMFGVITSLALLFNLLI 348

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
            +A++SL GAT+TLP  AG+ L +GL+VD+N+L+NERIREE R       ++  G+ +A 
Sbjct: 349 VVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRHGMPPRSAIMAGYDKAG 408

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           STI D+N+T LI  V L+ FG G ++GFA+TM + I  SMFTAI++ R++   I   +  
Sbjct: 409 STILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRSLSALIYGTRNN 468

Query: 521 KS 522
             
Sbjct: 469 LK 470



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 93/267 (34%), Gaps = 4/267 (1%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +           + V+    +    +    E   +              +    ++  
Sbjct: 210 QRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPTRIAGVFGKNFRTT 269

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         +   +          ++GP +  E + +G+  V+ S +  L++  I
Sbjct: 270 GLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTI 329

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++  F +     L+ ++   +   +LFG    L   A +   +G SV+  V++ +R+R+
Sbjct: 330 YYRM-FGVITSLALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIRE 388

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++     +  R  I    ++     +  ++   I  + +  +G   +  FA+ M  GI 
Sbjct: 389 ELR---HGMPPRSAIMAGYDKAGSTILDANLTGLIVGVALYAFGTGPLKGFALTMIIGIF 445

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +  ++I ++  +   IY  R     +
Sbjct: 446 ASMFTAITVSRSLSALIYGTRNNLKSL 472


>gi|332088370|gb|EGI93488.1| multidrug resistance protein mdtB [Shigella boydii 5216-82]
          Length = 1040

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/652 (10%), Positives = 170/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L+ D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLSSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQEIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 524 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 584 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 635



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|313498478|gb|ADR59844.1| Multidrug resistance protein mdtB [Pseudomonas putida BIRD-1]
          Length = 1032

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/583 (10%), Positives = 156/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YKLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + +TL F      +    +V   +   
Sbjct: 56  PQVMTSAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + VL+   I        + +  +  +   ++        
Sbjct: 116 SNLLPSDLPAPPVYNKVNPADTPVLT-LAISSKTMPLPKLNDLVDTRVAQKLAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   L         +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   ++ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLRSPEEYANLILAYNNGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +           V          +    
Sbjct: 275 ANENHAVLLNIQRQPGANVIEVVDRIKGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      L+   ++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVMVTFVFLRRFSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQGRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +  A  W +    L  + ++  L      Y +  KG   + 
Sbjct: 515 KHYGSALQWVLKHQPLTLLVAVASLVLTVFLYMVVPKGFFPVQ 557



 Score = 81.7 bits (199), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 62/160 (38%), Gaps = 7/160 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I  + M+ ++++R ++   L     + L +  T G   L G   N   + A+    G+
Sbjct: 340 IAIVLVVMVTFVFLR-RFSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +      +      K   +     +  + +    ++P+      
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G +   FAI +A  I+++   S+ +   +   +     K
Sbjct: 456 VGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +        +S RD I ++        + T++AA    +P+ +    G  + 
Sbjct: 928  IMMIDFALE--AERNQGMSPRDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELR 985

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                + M  G++V+   ++F    I L+      +
Sbjct: 986  QPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRLARR 1020


>gi|304383952|ref|ZP_07366409.1| AcrB/AcrD family multidrug resistance protein [Prevotella marshii
           DSM 16973]
 gi|304335030|gb|EFM01303.1| AcrB/AcrD family multidrug resistance protein [Prevotella marshii
           DSM 16973]
          Length = 1086

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/698 (10%), Positives = 191/698 (27%), Gaps = 56/698 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++        L++     L    ++++P   P               + +    
Sbjct: 9   RPVLSTVISVF-----LVLLGLIGLVSLPIEQYPDIAPPT-------------ISVSTSY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +     +   +IT+ F         A  V  
Sbjct: 51  TGADAQTVLNSVITPLEESINGVENMTYMTSSATNDGFAQITVYFKQGTDPNMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L  +  +  + T+  +  ++++     +     +   +       +  +   
Sbjct: 111 RVSQATSLLPSEVTQVGVTTSKRQSSNVIMYSLTTEDGRYDSEFITNYNAINIVPALKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P +++Q     + +       N       FG        
Sbjct: 171 QGVGNVQVFSMSTYSMRIWLKPDKMKQYGLIPSDIRAALADQNIEAAPGKFGE------- 223

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                   + ++S  ++            +    I  +    +         I       
Sbjct: 224 --------QSDVSFEYVMRYKGRL-KTPKEYEDIIISNSTNGQTLHLRDVAKIELGGLGY 274

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             G+       +  +    A  + N   +    +         P     +          
Sbjct: 275 SVGQRNNNQPSDMGMVQQIAGSNANEIAKGVKQVLEEQAKSFPPGLEYKINYDATEFLYA 334

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T AI   LV IV+++ +   +  L+   ++ +++I T   L + G ++ L ++
Sbjct: 335 SIEEVLMTLAITFILVFIVVYIFLQDFRSTLIPLIAVPVSLIGTFLFLWIFGFSINLLTL 394

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + ++L I + VD  I+V E +  +      S   +     +     I    +      + 
Sbjct: 395 SALLLAIAIVVDDAIVVVEAVHAKLDLGYKSAKLASTDAMNEISGAIISITLVMSAVFIP 454

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-------------KM 520
           + F  G +    R F ITM +SI+IS   A+++  A+   +++               + 
Sbjct: 455 VSFISGTSGTFYREFGITMAVSIVISAINALTLSPALCAILLKPHDAEGHERHMSYVDRF 514

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
            +      ++            +  R   +   ++     +  + T       D   G+ 
Sbjct: 515 HTAFNTSFNKMLDKYKKGVENIIGHRIITITCVVVGIAVLVFTMNTTKTGLVPDEDTGVL 574

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              ++  P         +       ++       +  +V   +  G    Q   +  +K 
Sbjct: 575 FVTVSLPPATSQEETQKVTDQIDAMLAHNPAIQSRQQIVGFNFIAGQGSDQATFIVKLKS 634

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                            G  I R  +       ++  I
Sbjct: 635 FEERPSGFFHKLAGLWEGDGIMRFFVDSKSNMAVLGMI 672



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 49/395 (12%), Positives = 112/395 (28%), Gaps = 18/395 (4%)

Query: 454  MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
                  Y  I       ++A       G  A  G   +M      S+     + +  +  
Sbjct: 667  AVLGMIYKQISTIKGAQILAFGPPMIPGFSAANGLTFSMQDKTGGSLDKFFQVTQDYLKA 726

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN--- 570
            +    +++    +    +      + +   +    G    +         L+    N   
Sbjct: 727  LNERPEIQRAMTSYNPNYPQYMVDVDVAKCKQSGIGPSTVLSTLQGYYGGLYASNFNSYG 786

Query: 571  --YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
              Y +  +G +   +      ++ V  +          + +   G  N      +     
Sbjct: 787  KLYRVMIQGDVASRMRPGDLTNIYVRTNAGMVPISEYCTLKRVYGPANVNRFNLFTSISV 846

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR----KGIVGVIISAIAMLIYI 684
             A           I  +  ++        G   S             G+I +   + +Y+
Sbjct: 847  NATVADGYSSGDAIKAVEEVAQQTLPAGYGYDFSGLTRSEQESSNTTGLIFAMCIVFVYL 906

Query: 685  WI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
             +      +   L  I +L   +     F  LFG + ++    A++ LIG    + +++ 
Sbjct: 907  ILSAQYESYLLPLSVILSLPFGLAGAFVFTQLFGHQNDIYMQIALIMLIGLLAKNAILIV 966

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FA 798
            +   +      T ++ +          L   + T +A  I +LPM    G          
Sbjct: 967  EFALE---RRRTGMAIKYSAILGATARLRPILMTGLAMVIGLLPMMFASGVGKNGNQTLG 1023

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                 G+++     IFI   + +     + K   I
Sbjct: 1024 AAAVGGMLIGMVLQIFIVPALFVIFQYLQEKIKPI 1058



 Score = 40.8 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 52/418 (12%), Positives = 136/418 (32%), Gaps = 35/418 (8%)

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
             +I    ++      +     +R       S  T+L+ + V       + R  +  +  
Sbjct: 88  FAQITVYFKQGTDPNMAAVNVQNRV------SQATSLLPSEVTQVGVTTSKRQSSNVIMY 141

Query: 495 SILIS---MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
           S+        +        +  +   K+++ +    +         I ++  + + +G+ 
Sbjct: 142 SLTTEDGRYDSEFITNYNAINIVPALKRVQGVGNVQVFSMSTYSMRIWLKPDKMKQYGLI 201

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            S + +  +   +      +G       +  +     +       ++      +    + 
Sbjct: 202 PSDIRAALADQNIEAAPGKFGEQSDVSFEYVMRYKGRLKTPKEYEDIIISNSTNGQTLHL 261

Query: 612 DG-----------------EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                                        Q         + + VK+ + E          
Sbjct: 262 RDVAKIELGGLGYSVGQRNNNQPSDMGMVQQIAGSNANEIAKGVKQVLEEQAKSFPPGLE 321

Query: 655 EIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
             +    +  L   I + ++ + I+ I + I ++I    +   L  +  + + +  T  F
Sbjct: 322 YKINYDATEFLYASIEEVLMTLAITFILVFIVVYIFLQDFRSTLIPLIAVPVSLIGTFLF 381

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +FG   NL  ++A+L  I   V+D +VV + +   + L   S         ++NE  G
Sbjct: 382 LWIFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLDLGYKSAKLAST--DAMNEISG 439

Query: 771 RSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +  ++      +P+  + G  G+    F I MA  IV++A +++ ++  +   +  
Sbjct: 440 AIISITLVMSAVFIPVSFISGTSGTFYREFGITMAVSIVISAINALTLSPALCAILLK 497


>gi|188533453|ref|YP_001907250.1| multidrug efflux system subunit MdtB [Erwinia tasmaniensis Et1/99]
 gi|188028495|emb|CAO96357.1| Multidrug resistance protein [Erwinia tasmaniensis Et1/99]
          Length = 1039

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/515 (11%), Positives = 137/515 (26%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGIM-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ++L F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVSLQFQLALPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        + +  +  +   +I        
Sbjct: 125 TNLLPGDLPNPPVYSKVNPADPPIMT-LAVTTTSLPMTQVADMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  T+  +       N +                    
Sbjct: 184 VTLSGGQRPAVRVKLNAQALAALGITSEAVRSAISSANVNSAKGSLDGP----------- 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   KT +    +                 + +       G  
Sbjct: 233 ---------DRSITLSANDQIKTVEGYRQLIISYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    +   L A         +          S    
Sbjct: 284 ANRQPAIVLNVQRQPGANIIATADDIRRMLPSLTASLPKSVEVKLLSDRTTNIRASVHDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      L+   ++ L+++ T A +   G ++   ++  + +
Sbjct: 344 QFELILALALVVMIIYLFLRNAAATLIPAVAVPLSLVGTFAAMYFFGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVVENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA+T+ ++ILIS   ++++   M   +
Sbjct: 464 IVGRLFREFALTLAVAILISAVVSLTLTPMMCARL 498



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 60/150 (40%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + M+IY+++R      L     + L +  T      FG   N   + A+    
Sbjct: 347 LILALALVVMIIYLFLR-NAAATLIPAVAVPLSLVGTFAAMYFFGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVVENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFALTLAVAILISAVVSLTLTP 492



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 88/248 (35%), Gaps = 6/248 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +        SV  S + S++    +      ++       +      +  + +  + + 
Sbjct: 779  SIRLKSSDGGSVPLSAIASVEQRHGALSINHLDQFPSTTFSFNVSPDFSLEQAVNAISQA 838

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
               +   S I           +  +   +  ++ + +AM I + + ++ +   +  ++TL
Sbjct: 839  EKTLAMPSDIITRFQGSTLAFQAALSNTVWLIVAAIVAMYIVLGVLYESFIHPVTILSTL 898

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   L    + G E ++ A+  ++ LIG    + +++ D            ++ R+ 
Sbjct: 899  PTAGVGALLALMVSGSELDVIAIIGIILLIGIVKKNAIMMID--FALAAEREQGMTPREA 956

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++        + T++AA    LP+ +    G  +       M  G+VV+   ++F   
Sbjct: 957  IYQACLLRFRPILMTTLAALFGALPLMLSQGVGAELRRPLGTAMVGGLVVSQVLTLFTTP 1016

Query: 818  PILLFIYD 825
             I L    
Sbjct: 1017 VIYLLFDR 1024


>gi|33595143|ref|NP_882786.1| putative multidrug-efflux system protein [Bordetella parapertussis
           12822]
 gi|33565220|emb|CAE36018.1| putative multidrug-efflux system protein [Bordetella parapertussis]
          Length = 1053

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/571 (11%), Positives = 154/571 (26%), Gaps = 40/571 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVVVLLAGLLAMF-----QLPIAEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEAINGVEDMLYMQSQANSDGNLTLTVNFKLGVDPDQAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L        + T        ++                   I    D++       
Sbjct: 116 ALPRL-------GVTTIKSSPTLTLVVHLISPNDRYDITYLRNYAIINVKDRLARLNGVG 168

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T +++       N      + G    +     Q 
Sbjct: 169 EVAVWGSGNYAMRVWLDPQKVAQRGMTASEVIAAIREQNVQVAAGVIGASPTQGDVPLQL 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          +      +           
Sbjct: 229 NVNTRGRL-------------QTEQEFRDIILKTSPDGGVTYLADVARVELDAQEYGLRS 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L     P     +E         S   
Sbjct: 276 LLDNRQAIGMGIMQAPGANALDVADQVRATMQELAQDFPPGVEYRIEYDPTQFVRASIKA 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ ++++ T ALL + G ++   S+ G+V
Sbjct: 336 VVHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFALLLMFGYSINALSLFGMV 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E +        +   +           I    +T     V L F  
Sbjct: 396 LAIGIVVDDAIVVVENVERNISAGLTPREATYRAMREVSGPIIAIALTLCAVFVPLAFMT 455

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK--SIDINPLSRFFLIPD 536
              G   + FA+T+ +S +IS F ++++  A+   +++    K   +            +
Sbjct: 456 GLSGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLKGHHDKPDWLTRGMNRWLGGFFN 515

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTH 567
                F RA                  +  +
Sbjct: 516 GFNRVFGRASESYATGVSGVIRRKASAMGVY 546



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L G + N+     ++ L+G S  + +++ +  R+  
Sbjct: 894  SLTLPLAVILIVPMSILAALTGVWLTGGDNNIFTQIGLMVLVGLSAKNAILIVEFARE-- 951

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L    ++ R+   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 952  -LELQGMAPREAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGAEMRQAMGVAVFFGM 1010

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +F+     + +    A+ 
Sbjct: 1011 LGVTLFGLFLTPVFYVLLRALGARR 1035



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 56/127 (44%), Gaps = 6/127 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T     +FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 358 WRASIIPLLAVPVSIVGTFALLLMFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIS 417

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                ++ R+   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 418 A---GLTPREATYRAMREVSGPIIAIALTLCAVFVPLAFMTGLSGQFYKQFAMTIAISTV 474

Query: 807 VAASSSI 813
           ++A +S+
Sbjct: 475 ISAFNSL 481


>gi|114046655|ref|YP_737205.1| acriflavin resistance protein [Shewanella sp. MR-7]
 gi|113888097|gb|ABI42148.1| acriflavin resistance protein [Shewanella sp. MR-7]
          Length = 1051

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/580 (9%), Positives = 157/580 (27%), Gaps = 38/580 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  GL+        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGLVS-----FTKLSVREMPDVESPVVT---------VSTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SAAIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPEDANDPVVSKDNGSGEPSVYVNLSSS--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   ++                         N  
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDITNALRKE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 214 TPGGQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNLSLGVITQSDANPLIVAQEVHKEVDRIQDFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++ G ++ L ++  ++
Sbjct: 334 VYNTLYVTGALVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  +    ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVVENIFHHIERGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S+L S   A+++   +   +++     +     +   F   + +
Sbjct: 454 GMVGLLFTEFSVMLAVSVLFSSLIALTLTPVLSSKLLKANVKPNRFNRFVDSGFARMEKV 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
               +        ++ L  +  +                 
Sbjct: 514 YRVGVTHAIRFRLLAPLVILACVGGSVWLMQQVPSQLAPQ 553



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 89/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IV 671
             + L            V + V K++  I        + +V    +  + R        +
Sbjct: 279 VNLSLGVITQSDANPLIVAQEVHKEVDRIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        +FG   NL  + A++  IG
Sbjct: 339 YVTGALVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVLFSSLIALTLTPVLSSKLLKANVKPNR 498



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 12/134 (8%)

Query: 699  TLILDITKTLGFFA-LFGIEFNLTAV-----AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L++  T  +G F    G+      +       ++ LIG    + +++ +      +L  
Sbjct: 878  PLVVMFTVPMGVFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFAN---QLRD 934

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              ++    I  +    L   + T+    +  +P+      G     +    + FG+  A 
Sbjct: 935  RGLALDKAIIDASTRRLRPILMTAFTTLVGAVPLIFSSGAGSESRIAVGTVVFFGMAFAT 994

Query: 810  SSSIFIAAPILLFI 823
              ++F+   +   I
Sbjct: 995  FVTLFVIPAMYRLI 1008


>gi|148265315|ref|YP_001232021.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
 gi|146398815|gb|ABQ27448.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
          Length = 1032

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/583 (11%), Positives = 155/583 (26%), Gaps = 40/583 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   I   G+            ++  P                     L   
Sbjct: 10  RRPIMTSLIMIAIFIFGVAS-----YRLLPVNDLPKVDYPTIQ---------VSANLPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  S +        +      +IT+ F   R  +  A  V   +  
Sbjct: 56  NPDTMASAVATPLEKQFSTIAGVDSMTSTNGIGSTRITIQFNLDRDIDAAAQDVQAAISL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  +                I+    +   +   A++           +I      
Sbjct: 116 AIRQLPANMTSPPSFRKVNPADQPILYLALSSPTLPLSAVD--EYAQTLISQRISTISGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  + DP  L        +++      N +    M   +    +    
Sbjct: 174 AQVSVYGSQKYAVRAQLDPKALASRQIGIDEVATAIGDANVNMPTGMLDGKKQAFTIEAN 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                          +                 +   +      
Sbjct: 234 G--------------------QMFNAASFRSMVVAYRDGSPIRLEEVGQVLDSVENTKTA 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    +++   L    R+         V          S  
Sbjct: 274 SWYNNTRAIVLAVQRQPGTNTIEVVDSVKKLLPTFRSQMPASVELSVLFDRSNMIRESMH 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +  GLV++V+F+ +      ++   ++ ++++ T + + +LG ++   S+  +
Sbjct: 334 DVKFTLCLTIGLVIMVIFLFLRNLSATIIPSLAVPMSIVGTFSAMHMLGFSINNISMMAL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I++ E I     K +S   +   G      TI    I+ +   + + F 
Sbjct: 394 TLAVGFVVDDAIVMLENIVRHMEKGESAMEAAFKGSKEIGFTIISMTISLVAVFIPVLFM 453

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G  +  FAIT+ ++IL+S F ++++   +    ++    +      L         
Sbjct: 454 GGILGRLLHEFAITISVAILVSCFVSLTLTPMLCSRFLKPPAAERHGRLYLFMERFFDRL 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           + +     +           +  +  L T  L   I       
Sbjct: 514 LNLYERSLQQVLRFRRTTMVLTILVTLVTGWLFTRIPMGFLPT 556



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 92/263 (34%), Gaps = 12/263 (4%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           FT   N  +      +  V+A R      +    + L   + +           + L  Q
Sbjct: 228 FTIEANGQMFNAASFRSMVVAYRDGSPIRLEEVGQVLDSVENTKTASWYNNTRAIVLAVQ 287

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIA 679
                    V++ VKK +              V    S  +          + + I  + 
Sbjct: 288 RQPGTNTIEVVDSVKKLLPTFRSQMPASVELSVLFDRSNMIRESMHDVKFTLCLTIGLVI 347

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           M+I++++R      +     + + I  T     + G   N  ++ A+   +G+ V+D +V
Sbjct: 348 MVIFLFLR-NLSATIIPSLAVPMSIVGTFSAMHMLGFSINNISMMALTLAVGFVVDDAIV 406

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGS 796
           + + +   ++      S  +   K   E     +  +++     +P+   G   G ++  
Sbjct: 407 MLENI---VRHMEKGESAMEAAFKGSKEIGFTIISMTISLVAVFIPVLFMGGILGRLLHE 463

Query: 797 FAIPMAFGIVVAASSSIFIAAPI 819
           FAI ++  I+V+   S+ +   +
Sbjct: 464 FAITISVAILVSCFVSLTLTPML 486



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 94/266 (35%), Gaps = 18/266 (6%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G + +   + + V L  + +  +++    ++             L+       A T V E
Sbjct: 767  GMLYIHSKSGQLVPLDTIAAITKTIGPLTVNHLGQLPAVTISFNLRPGLALGDAMTLVDE 826

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFA 693
            + +  + + V  S     +      +  L       +++     +IYI +      +   
Sbjct: 827  LARTALPQTVSTSFQGTAQAFQSSFNGLL-------ILLVMAVFVIYIVLGVLYESYIHP 879

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            +  ++ L       L    +F  + N+     ++ L+G    + +++ D   +  +    
Sbjct: 880  ITILSGLPAAGFGALITLMIFHCDLNIYGFVGIIMLLGIVKKNAIMMIDFALEAERKDGK 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                 D I +         + T+MAA +  LP+A+    GG       + +  G++ +  
Sbjct: 940  R--PLDAIYEGALVRFRPIMMTTMAALMGTLPIAMGLGAGGESRQPLGLAVVGGLLTSQL 997

Query: 811  SSIFIAAPILLFIYDWRAK---NARI 833
             +++I   +  ++    AK     ++
Sbjct: 998  LTLYITPVVYYYMDVLLAKVRSRKKL 1023


>gi|187926363|ref|YP_001892708.1| acriflavin resistance protein [Ralstonia pickettii 12J]
 gi|241665850|ref|YP_002984209.1| acriflavin resistance protein [Ralstonia pickettii 12D]
 gi|187728117|gb|ACD29281.1| acriflavin resistance protein [Ralstonia pickettii 12J]
 gi|240867877|gb|ACS65537.1| acriflavin resistance protein [Ralstonia pickettii 12D]
          Length = 1033

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/608 (12%), Positives = 168/608 (27%), Gaps = 45/608 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+            +   P                  +  L    
Sbjct: 10  RPVATALLTIGVALAGIAA-----FRLLPVSPLPQVDFPTI---------SVNASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S     ++ITL F  SR  +  A  V   +   
Sbjct: 56  PETMAATVATPLERSLGRIAGITEMTSSSSLGSSRITLQFDLSRDIDGAARDVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L      N          + ++    +        E           ++       Q
Sbjct: 116 RSLLPSGLPSNPTYRKVNPADAPIMI-VGLTSDTKSRGELYDAASTILAQKLSQINGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P  L +   +   +       N +K   M               
Sbjct: 175 VSIGGASLPAVRVELNPMALNKYGISMETVRTVITSTNANKPKGMME------------- 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  SG  +    AN   K       +                 +   +  + +   
Sbjct: 222 -------SGDRVWTIYANDQAKKAVEYQSLIIAWRKGSPVRLADVAEVTDSVQDIRNYGS 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I S +   +   T++    +   LR          V          S    
Sbjct: 275 ANGKPSVLLIISRQPGANIIDTVDRINDVLPYLRNTIPAQINLDVMMDRTPTIRASLKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +   LV++V+F+ +   +  L+   ++ +++I T  ++ L G +L   S+  + +
Sbjct: 335 ERTLVLSIALVIMVVFLFLRNVRATLIPSVAVPVSLIGTFGVMYLCGYSLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +            +   G      T+   + + +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENVSRHIENGMRPMQAALKGAREVGFTVVSMSFSLIAVFIPLLMMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G   R FA+T+ ++IL+S+  +++    M   +        +           +    
Sbjct: 455 IVGRLFREFAVTLSVAILVSLVVSLTTTPMMCARLLKPAAEEEHGWFHRKTEGFFTFLLD 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG-VLANRPVDLS 592
           I        +R  +  + I +     ++ L       +      G  +G + A++ +   
Sbjct: 515 IYRNSLAWALRHSWLTLLILLATVCLNVYLYIIVPKGFFPQQDTGRVIGFIQADQSISFQ 574

Query: 593 VVRSNLES 600
            +R+ L  
Sbjct: 575 AMRTKLTD 582



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 86/241 (35%), Gaps = 8/241 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               PV L+ V    +S+Q               L+  +    + +     +  V   + 
Sbjct: 249 RKGSPVRLADVAEVTDSVQDIRNYGSANGKPSVLLIISRQPGANIIDTVDRINDVLPYLR 308

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             +P     +  +      R  ++     +++S   +++ +++  +     L     + +
Sbjct: 309 NTIPAQINLDVMMDRTPTIRASLKDVERTLVLSIALVIMVVFLFLRNVRATLIPSVAVPV 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T G   L G   +  ++ A+    G+ V+D +VV + +    +     +       
Sbjct: 369 SLIGTFGVMYLCGYSLDNLSLMALTVATGFVVDDAIVVLENV---SRHIENGMRPMQAAL 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K   E     V  S +     +P+ + GG V      FA+ ++  I+V+   S+    P+
Sbjct: 426 KGAREVGFTVVSMSFSLIAVFIPLLMMGGIVGRLFREFAVTLSVAILVSLVVSL-TTTPM 484

Query: 820 L 820
           +
Sbjct: 485 M 485



 Score = 41.2 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 91/259 (35%), Gaps = 6/259 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                             +         V  S     +  + +       +     + +  
Sbjct: 750  VMEAAPQYWQNPDGLRDIYIITSTGAQVPLSTFSHYEPTNTALAVNHQGQFAASTISFNL 809

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                + +   + ++  +  I   S++  +     K  ++ +    V ++ + I + I + 
Sbjct: 810  APGASLSGATQDIQDAMNRIGVPSSVHGSFQGTAKAFQDSLSSQPVLILFALITIYIVLG 869

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++ +   +  ++TL       L    +   +F++ A+  V+ LIG    + +++ D  
Sbjct: 870  LLYESYVHPITILSTLPSAGVGALLALIITDTDFSIIALIGVILLIGIVKKNAIMMIDFA 929

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +     +  +S  D I  +        + T+MAA +  LP+A+    G  +     I +
Sbjct: 930  LE--AERSQGMSPADAIFHACVLRFRPILMTTMAALLGALPLALGHGDGAELRTPLGISI 987

Query: 802  AFGIVVAASSSIFIAAPIL 820
              G++V+   +++    + 
Sbjct: 988  VGGLLVSQILTLYTTPVVY 1006


>gi|119509589|ref|ZP_01628736.1| protein export protein SecD [Nodularia spumigena CCY9414]
 gi|119465778|gb|EAW46668.1| protein export protein SecD [Nodularia spumigena CCY9414]
          Length = 472

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 146/528 (27%), Positives = 226/528 (42%), Gaps = 81/528 (15%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +   +I   +I  I +++ +P                   +SLGLDLRGGS L ++V 
Sbjct: 4   QRSLLALIFVLLIAAIAVIVTIP-------------------VSLGLDLRGGSQLTIQVK 44

Query: 62  ED----DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116
                 +     L+     L   +   G+    ++ +  +KI +        E     + 
Sbjct: 45  PAPGMREITERDLEGVQKVLEGRVNGLGVSEPVIQTVGADKILVQLPGVNDPEQAERVLG 104

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
              Q    +     +  L                         +    E +R   D+  I
Sbjct: 105 GTAQLEFKQQKPGTETQLFAFQAS----------------RAELRAKQEELRSSDDEALI 148

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            ++  +   +++ + +L    DP    + L              N        V    D 
Sbjct: 149 IKNQEELQQNNQAIAELFESTDPPLDGKYLQDAYGEPTQNSSNWN--------VAIRFDQ 200

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
            G +        ++G   +      +     PVV I F   G                  
Sbjct: 201 KGGELFANLTKNLAGTGRSIGVFLDNELISAPVVGIEFAATG------------------ 242

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          I  G A I+G FT++ A  L   LR G+LP+ + IVE R VGA L
Sbjct: 243 ---------------ITGGAAVITGRFTLQEANDLGVQLRGGALPLPVEIVERRTVGATL 287

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G DSI     A V GL+L+++FM+V Y   GL+AD S+ +  +LT A  +LLG TLTLP 
Sbjct: 288 GRDSIQSSIYAGVGGLILVLIFMVVYYRLPGLIADVSLVIYSLLTWASFALLGVTLTLPG 347

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG +L IG+AVD+N+L+ ER REE R  +S++ S++ GF RA+S+I DSN+T  IA   
Sbjct: 348 IAGFILSIGMAVDANVLIFERTREELRAGKSLYRSVESGFFRAFSSILDSNVTTWIACAA 407

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           LF+FG G VRGFA+T+ L + +SMFTAI+  R++M   +    +K+  
Sbjct: 408 LFWFGSGLVRGFALTLALGVAVSMFTAITSSRSLMFLAVTNAAVKNKR 455



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ I+  I   +   I +LI++ + ++    L A  +L++    T   FAL G+ 
Sbjct: 284 GATLGRDSIQSSIYAGVGGLILVLIFMVVYYRLP-GLIADVSLVIYSLLTWASFALLGVT 342

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      S    ++          + +++
Sbjct: 343 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKSLYRSVESGFFRAFSSILDSNV 399

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             +I+   +  +G  ++  FA+ +A G+ V+  ++I  +  ++  
Sbjct: 400 TTWIACAALFWFGSGLVRGFALTLALGVAVSMFTAITSSRSLMFL 444


>gi|59713131|ref|YP_205907.1| acriflavin resistance plasma membrane protein [Vibrio fischeri
           ES114]
 gi|59481232|gb|AAW87019.1| acriflavin resistance plasma membrane protein [Vibrio fischeri
           ES114]
          Length = 1023

 Score =  156 bits (393), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/609 (12%), Positives = 179/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +G+         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGIQAIF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               Q+ IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSQSVMGQSTITVTMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D+++S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELVSS--QITDYLERVVNPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+R+  +  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRIWLDPARMAAINMTATDVMGVLNANNFQSAAGQATGEFVLYNGSANT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V D  E+                     ++                 +    +  +   
Sbjct: 233 QVSDVEELE--------------------NLVVRTNDGEVVRLSDIAKVSLDKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLELLPQLEKNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTILEAALIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  ++ F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGETPFRAAIIGTREIAVPVIAMTLTLGAVYAPIAMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +        +  K +     +    
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLVANEEPNRFEKKVHHILDNMSER 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               + +   R         I+F+   +   F        + KG I L   A    +L  
Sbjct: 513 YERMLNVIMTRRPVIIAFAVIVFASLPLLFKFIPSELAPSEDKGVIMLMGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 MQNTMNDVN 581



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 82/242 (33%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V LS +                   E            + +     +  + 
Sbjct: 244 VVRTNDGEVVRLSDIAKVSLDKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++ + +P +   N          E I + I  ++ +A+ +L+ I +    +   +  I 
Sbjct: 304 PQLEKNLPSNIKMNVMYDSTIAINESIHEVIKTILEAALIVLVVITLFLGSFRAVIIPIV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +          G  +NL  + A++  IG  V+D +VV + +    +      +  
Sbjct: 364 TIPLSLIGVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGETPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVIAMTLTLGAVYAPIAMMGGITGSLFKEFALTLAGSVFVSGIVALTL 480

Query: 816 AA 817
           + 
Sbjct: 481 SP 482



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 74/777 (9%), Positives = 213/777 (27%), Gaps = 36/777 (4%)

Query: 74   SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             +EL + +         + ++ +   +S   S      +      +    +        N
Sbjct: 237  VEELENLV--VRTNDGEVVRLSDIAKVSLDKSHDVYRASANGQEAVVAAINAAPSANPIN 294

Query: 134  LLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISESTIQRLGSH 187
            +     E    +   + S   ++ +    I  +    E+I+  ++   I    I      
Sbjct: 295  IAADVLELLPQLEKNLPSNIKMNVMYDSTIAINESIHEVIKTILEAALIVLVVITLFLGS 354

Query: 188  RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
               + +P    P  L  +      M F       +    +  +  + D         D+ 
Sbjct: 355  FRAVIIPIVTIPLSLIGVAMVMQAMGFSW--NLMTLLAMVLAIGLVVDDAIVVLENVDRH 412

Query: 248  EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
               G     A      +   PV+ ++         +       G   ++  +  +  A  
Sbjct: 413  IKLGETPFRAAIIGTREIAVPVIAMTLTLGA---VYAPIAMMGGITGSLFKEFALTLAGS 469

Query: 308  INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
            +  +            +               +   L+ + ER         +      A
Sbjct: 470  VFVSGIVALTLSPMMCSKMLVANEEPNRFEKKVHHILDNMSERYERMLNVIMTRRPVIIA 529

Query: 368  IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
                +   +  +          ++    + ++ T    + L       +    +L     
Sbjct: 530  FAVIVFASLPLLFKFIPSELAPSEDKGVIMLMGTAPSNANLDYMQNTMNDVNTILSNQPE 589

Query: 428  VDSNILVNERIREENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
            V    +             +          S+A  T     +   +  + +  F    + 
Sbjct: 590  VSFAQVFTGVPNANQAFGIASMVPWSQREASQAEVTKRVGTLVQDVPGMAVTAFQMPELP 649

Query: 487  GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            G    + +  +I+   +   +  +   ++   K   + +            + I   + +
Sbjct: 650  GAGSGLPIQFVITTPNSFESLFQIATEVLTGVKGSPLFVYSDLDLNFDSATMKINIDKNK 709

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGI---QLGVLANRPVDLSVVRSNLESLQI 603
                G+++     ++  +   G    ID  G        V     ++   + +       
Sbjct: 710  AGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKYRLNPESMNNYYVRSAS 769

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI------------ 651
            G+          + +   +  P  +   +  +  V      +                  
Sbjct: 770  GEAVPLGSLISIDVIAEPRSLPHFNQLNSATVGAVPTPGVAMGDAINWFEDVANNKLPSG 829

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     L  + ++ L I   L 
Sbjct: 830  YNHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESIRDPLVIMVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++    +  S      + ++    L
Sbjct: 890  ALAWGAASMNIYSQVGLITLVGLITKHGILICEVAKEEQLHHQKSK--MAAVTEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++
Sbjct: 948  RPILMTTAAMIAGLIPLLYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYL 1004


>gi|168818178|ref|ZP_02830178.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205344712|gb|EDZ31476.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 1040

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|78186678|ref|YP_374721.1| hydrophobe/amphiphile efflux-1 HAE1 [Chlorobium luteolum DSM 273]
 gi|78166580|gb|ABB23678.1| Hydrophobe/amphiphile efflux-1 HAE1 [Chlorobium luteolum DSM 273]
          Length = 1070

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/521 (11%), Positives = 138/521 (26%), Gaps = 43/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +GL+  +     Q  + RFP   P               + +    
Sbjct: 8   RPVLATVISVILVILGLVGMV-----QLSVTRFPDIAPP-------------SVTVTASY 49

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +        +E  + ++       +     +  I + F      +  A  V  
Sbjct: 50  PGASAETVGRSVAPPLEEAINGVENMTYMTSTSANDGSLSINVFFKQGTNADQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  +  +  + T   +   I+L   +  +                +D +   
Sbjct: 110 RVAQATSRLPAEVNEIGVSTIKRQNSQIMLVNLSSSREEYDQTFLQNYAKINIVDDLARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q      +   +     P ++        ++       N       FG        
Sbjct: 170 PGVGQVSVYGNMDYSMRLWLRPEKMAAYGVNPDEVMAAVRSQNLEAAPGSFGESGGTSMQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                        +    +                 +       
Sbjct: 230 YTIKYPGK----------------FAYPGEFEHIVVRANPDGSILRLGDLARVEFGAYSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 + N        +               +   +      
Sbjct: 274 GVRVKANGDAGIVLAVYQAPGSNANEVETRLREVLKKASHSLPEGLSVSIPFSSKKVVDE 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV +V+F+ +   +  L+   ++ + ++ T   ++L G ++ + ++
Sbjct: 334 SIEQVQHTLIEAFLLVFLVVFLFLQDFRSTLIPAIAVPVAILGTFFFMNLFGFSINVLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIA 473
            G+VL IG+ VD  I+V E +  +  K      +         + A  TI     +  + 
Sbjct: 394 FGLVLAIGIVVDDAIVVVEAVHAKMEKTHWPATAATVSAMREITTAIVTITLVMASVFLP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +    G   R FA T+ ++ILIS   A+++  A+    
Sbjct: 454 VGFMEGSTGVFYRQFAFTLAIAILISALNALTLSPALCALF 494



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/426 (11%), Positives = 115/426 (26%), Gaps = 21/426 (4%)

Query: 404  LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
            +L  + A   + S+AGI +    +  S  L+  ++++ + +       +         ++
Sbjct: 603  MLRSMPAVERVISVAGINILSRSSSPSAGLIFMQLKDLHLRGPGGD--IKSVIGTITGSL 660

Query: 464  FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +     +  A  +    G   V G    +      S+     I  + +  +++  ++   
Sbjct: 661  YSIKEGSFFALSMPTVPGFSTVGGLEFVLQDRSGGSLQKFSGITESFIGSLMQRPEIAFA 720

Query: 524  DINPLSRFFLIPDCIAIQFMRARFW----------GVGISILFSICSICLLFTHGLNYGI 573
                 + +      +     +                  S+  S  +    +   +    
Sbjct: 721  FTTFNASYPQYSLEVDAARAKRIGVEVSDLLRVMQAYYGSMQASDFNRFGKYYRVVMQAE 780

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                     +        S     + SL      +     +   L               
Sbjct: 781  PDARRDPQSLSGIFVKSSSGSMVPVSSLITLKRVYGPESVDHFNLFNAIPINAVVSPGYS 840

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKW 690
              + +               T     +   EL   G    I     + +Y     +   +
Sbjct: 841  TGQAIAAIGEVSAATLPTGFTYDWKGQSREELESSGGQMAIFLLSVIFVYFLLSALYESY 900

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  + ++   +          GIE N+    A++ LIG    + +++ +     M+ 
Sbjct: 901  LLPLAVMLSIPTGLLGVFIGIRAAGIENNVYVQVAIIMLIGLLAKNAILIVEFA---MQR 957

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVV 807
                +S      +     L   + TS+A    +LP+    G       S       G+ V
Sbjct: 958  RIAGMSLGRAAIEGAKARLRPILMTSLAFVAGLLPLLFVTGPAAAGNHSIGAAAIGGMFV 1017

Query: 808  AASSSI 813
                 I
Sbjct: 1018 GMVLGI 1023



 Score = 45.8 bits (106), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 56/142 (39%), Gaps = 9/142 (6%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + I  T  F  LFG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 359 DFRSTLIPAIAVPVAILGTFFFMNLFGFSINVLTLFGLVLAIGIVVDDAIVVVEAVH--A 416

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVI--GSFAIPMAF 803
           K+  T          ++ E     V   +   ++ + +    + G + +    FA  +A 
Sbjct: 417 KMEKTHWPATAATVSAMREITTAIVT--ITLVMASVFLPVGFMEGSTGVFYRQFAFTLAI 474

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            I+++A +++ ++  +      
Sbjct: 475 AILISALNALTLSPALCALFLG 496


>gi|333002111|gb|EGK21676.1| multidrug resistance protein mdtB [Shigella flexneri VA-6]
          Length = 1049

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/527 (10%), Positives = 140/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +        +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLNVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|298479640|ref|ZP_06997840.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp. D22]
 gi|298274030|gb|EFI15591.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp. D22]
          Length = 1065

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/694 (10%), Positives = 185/694 (26%), Gaps = 49/694 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++      L    ++++P   P   +                  
Sbjct: 9   RPVLSAVISITIVVVGII-----GLFSLPVEQYPDIAPPTIM---------VSTTYYGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + +   +    +E  + ++       S     +  IT+ F      +  A  V   +  
Sbjct: 55  AETLQKSVIAPLEEAINGVEDMTYMTSSATNAGSVSITVYFKQGTDPDMAAVNVQNRVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +  + T+  +   + +   +           S  I      QI       
Sbjct: 115 ATGQLPAEVTQVGVTTSKRQTSILQMFSLSSPDESYDENFLSNYISINLKPQILRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +            + P  + Q     + ++      N       FG            
Sbjct: 175 DMMIMGGEYSMRVWMK-PDVMAQYKLIPSDITGVLAEQNIESATGSFGENSNETYQYTMK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +                   +    +                +I           
Sbjct: 234 YKGRLI----------------TPEEFGDIVIRSSDTGEVLKLKDIADIQLGQDSYAYHG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +    A  +     +    L    R              +      S   
Sbjct: 278 GMDGHPGISCMVFQTAGSNATEVNQNIDKLLDEARKDLPKGVELTQMMSSNDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+    I ++++ T A +++ G ++ L ++  +V
Sbjct: 338 VVKTLIEAIVLVILVVYVFLQDFRSTLIPLVGIVVSLVGTFAFMAIAGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG  VD  I+V E ++         S   S+D     + + I  S +   +   V F 
Sbjct: 398 LVIGTVVDDAIIVVEAVQARFDVGYRSSYMASIDAMKGISNAVITSSLVFMAVFIPVSFM 457

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI-------------IRYKKMKSID 524
            G        F +TM +++ IS   A+++  A+   +                 + +   
Sbjct: 458 GGTSGTFYTQFGLTMAVAVGISAINALTLSPALCALLLKPYINEDGTQKNNFAARFRKSF 517

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           I + F++ R+    +     +  + L+ T   +   D   G+    +
Sbjct: 518 NSAFDVMVDKYKTIVLLFIKRRWLTWSLLACSVVLLVFLMNTTKTSLVPDEDQGVIFVNV 577

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +            +       +           +       G   +   ++  +K     
Sbjct: 578 STAAGSSLTTTDEVMERIEKRLMEIPQLKHVQKVAGYGLLAGQGSSFGMLILKLKPWDER 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                 +Q+       ++ ++    +  +    I
Sbjct: 638 PDDADNVQSVIGQVYALTADIKDASVFAISPGMI 671



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 61/140 (43%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L  +  +++ +  T  F A+ G   NL  + A++ +IG  V+D ++V + ++   
Sbjct: 359 DFRSTLIPLVGIVVSLVGTFAFMAIAGFSINLLTLFALVLVIGTVVDDAIIVVEAVQARF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
            +   S     +   ++       + +S+      +P++  GG+       F + MA  +
Sbjct: 419 DVGYRSSYMASI--DAMKGISNAVITSSLVFMAVFIPVSFMGGTSGTFYTQFGLTMAVAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A +++ ++  +   +  
Sbjct: 477 GISAINALTLSPALCALLLK 496



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 77/253 (30%), Gaps = 12/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +       LS   +   S     +S  N                   A   V E  ++
Sbjct: 790  VRMSNGEMAPLSQFVTLTRSYGAESLSRFNMYNSIAVNAMPADGYSTGDAIKAVQETAEQ 849

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             + +         T     +    +I  GI  ++I  I   +Y      +      + ++
Sbjct: 850  SLPKGYGYDYGGITREENQQSGTTMIIFGICFLMIYLILSALY----ESFIIPFAVLLSV 905

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRD 759
               +  +  F  +FG+E N+     ++ LIG      +++     +         +    
Sbjct: 906  PCGLMGSFLFARIFGLENNIYLQTGLIMLIGLLAKTAILLT----EYAAERRKAGMGLIA 961

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
                +    L   + T++     + P+ +    G +   S    +  G+ +   + +FI 
Sbjct: 962  SAVSAAKARLRPILMTALTMIFGLFPLMMSSGVGANGNRSLGTGVVGGMTIGTLALLFIV 1021

Query: 817  APILLFIYDWRAK 829
              + +     + +
Sbjct: 1022 PTLFIAFQWLQER 1034


>gi|293369310|ref|ZP_06615897.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
 gi|292635640|gb|EFF54145.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
          Length = 1059

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/697 (10%), Positives = 173/697 (24%), Gaps = 55/697 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IG +           ++++P   P               + +   
Sbjct: 8   KRPVMAISISVLILAIGFISLF-----TLPVEQYPDIAPPT-------------VYVTAS 49

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    +      L   +        I   +       I + F      +  A  V 
Sbjct: 50  YTGADAEAVMNSVIMPLEESINGVEDMMYISSSASNAGLAIIQVYFKQGTDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L  +  K  + T   +   + +               +  +    I QI  
Sbjct: 110 NRVAKAQGLLPAEVTKVGVSTMKRQTSFLQIGALVCTDGRYDQTFLANYLDINVIPQIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E     +        +     P R+ Q     + ++      N        G       
Sbjct: 170 IEGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDITAILGEQNIEAPTGSLGESSKNVF 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    +                 +      
Sbjct: 229 Q----------------FTMKYRGRLKSVEEFRNTVVRSREDGSILRLQDVAEVELGTMT 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 + +      +    A  +     +        +          +    +     
Sbjct: 273 YSFRSEMDSQPAVLYMIFQTAGSNATAVNKEITAQIERMEKNLPAGTEFVTMMSSNDFLF 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + +
Sbjct: 333 ASIHNVVETLIIAIILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  +VL IG  VD  I+V E ++ +      S + +           I       +   +
Sbjct: 393 LFALVLAIGTVVDDAIVVVEAVQSKFDAGYKSAYLATKDAMGDVTMAIVSCTCVFMAVFI 452

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL---- 528
            + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +      
Sbjct: 453 PVTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVR 512

Query: 529 ------SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                     L      + F     W V  S+  ++  +  L +      +  +    + 
Sbjct: 513 AAYNASFNAVLGKYKRGVMFFIRHRWMVWTSLAVAVALLVYLMSTTKTGLVPQEDQGVIM 572

Query: 583 VLANRPVDLS-VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
           V  +     +    + +       +           +       G   +   ++  +K  
Sbjct: 573 VNVSISPGSTLEETTKVMDRLENILKDTPEIEHYARVAGYGLISGQGTSYGTIIIRLKDW 632

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                   +            + +    +     + I
Sbjct: 633 SERKGKEHSSDAVVSRLNGQFQAIKEAQVFSFQPAMI 669



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 80/291 (27%), Gaps = 8/291 (2%)

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                    +         ++      Y +D +    + V     +        L+ +   
Sbjct: 750  YCGGAYISNYNQYGKVYRVMMQASPEYRLDEQALNNMFVRNGTQMAPVSQFVTLKQVLGP 809

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            + + +                  S    +V+E V  +                       
Sbjct: 810  ETANRFNLYSTITANVNPADGYSSGEVQKVIEEVAAQSLPAGYGYEYGGMAREEASSGGA 869

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 I  + I  I  LI   +   +      I ++   +  +  F  + G+E N+    
Sbjct: 870  QTVF-IYAICIFLIY-LILACLYESFLIPFAVIFSVPFGLMGSFLFAKILGLENNIYLQT 927

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ LIG      +++ +     ++     +   +    +    L   + T +     +L
Sbjct: 928  GVIMLIGLLAKTAILITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGML 984

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+      G +   S    +  G+ V   + +F+     +     + K  +
Sbjct: 985  PLMFSSGAGANGNSSLGTGVVGGMAVGTLALLFVVPVFYIIFEFLQEKIRK 1035



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 359 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                S         ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 419 DAGYKSAYL--ATKDAMGDVTMAIVSCTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496


>gi|150378135|ref|YP_001314730.1| acriflavin resistance protein [Sinorhizobium medicae WSM419]
 gi|150032682|gb|ABR64797.1| acriflavin resistance protein [Sinorhizobium medicae WSM419]
          Length = 1065

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/631 (11%), Positives = 177/631 (28%), Gaps = 52/631 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++  MI  +GL         +  +D +P       +                   
Sbjct: 11  PVFATMMMVMILVLGLFS-----YGRLGVDHYPETDLPVVV---------VATTYTGASP 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    +   + +           + ++ + + F      ++ A +V   +  + 
Sbjct: 57  ESVESEISRPIEAALNTIGGIDTITSESYEGRSIVVVQFEVDVDSQDAAQEVRDRVARLE 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +K         +     +  +I+    +         E +    R   +++ +     Q 
Sbjct: 117 TKFPDAVATPQVTRYKPEGQAILSVAVSST--SRTLPEITTLATRVINNRLSVISGVGQV 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   Q+    DP RL       A +                         G     
Sbjct: 175 SLIGSSERQVLVVVDPDRLGAYGLAVATVIEAIR--------------------GENQDR 214

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                 SGI+    T             I   +      +      I    A V      
Sbjct: 215 AAGTLTSGINQRIVTVEGRIANTSAFNRIIVAQRNGYPVYLSEVATILDTGAEVTSLANY 274

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN-IVEERNVGADLGSDSIY 362
                           +            + L A      +   +   N        S  
Sbjct: 275 QGQTTLGLHIVKVQGANTVEVASAVRREVSALNAELTKDNVQLTITRDNSRPIASQVSQV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      L ++++F+ +   +  ++   ++ ++VI T A +  LG TL + ++  + L
Sbjct: 335 QRTLVEGGVLSVLIVFIFLNSWRSTVITGLTLPISVIGTFAAIYALGFTLNIMTLMALSL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+ +D  I+V E I    +  +    +   G +     +  + +  +   + + F GG
Sbjct: 395 SIGILIDDAIVVRENITRHLQMGKDPVRAALDGTNEIGLAVLSTTLCIVAVFLPVAFMGG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
              R    F +T+ +++ IS+F + ++   +       +  K+       +     D   
Sbjct: 455 LIGRFFLQFGVTVAVAVFISLFVSFTLDPMLSSIWRDPQSQKTAKRGFFGQLIERFDQWF 514

Query: 539 -----------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                         F   +     +  +F +  + +            +G + + + AN 
Sbjct: 515 EGLASRYRSVIYFTFDYRKTTIAIVLGMFVVSLLLVPRIGTEFLPPPDQGEVSISLEANE 574

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              L  + + +  ++     F       + +
Sbjct: 575 GASLDYMAAKVGQIERALREFNYVSSTYSTI 605



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 85/284 (29%), Gaps = 16/284 (5%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           I+     I               G           +D     ++L + Q       +   
Sbjct: 227 IVTVEGRIANTSAFNRIIVAQRNGYPVYLSEVATILDTGAEVTSLANYQGQTTLGLHIVK 286

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +                    E+ K  +   +     +       ++ R L+  G++ V
Sbjct: 287 VQGANTVEVASAVRREVSALNAELTKDNVQLTITRDNSRPIASQVSQVQRTLVEGGVLSV 346

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           +I  I +         W   +    TL + +  T       G   N+  + A+   IG  
Sbjct: 347 LIVFIFLN-------SWRSTVITGLTLPISVIGTFAAIYALGFTLNIMTLMALSLSIGIL 399

Query: 734 VNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           ++D +VV    R+N+  +               NE     + T++      LP+A  GG 
Sbjct: 400 IDDAIVV----RENITRHLQMGKDPVRAALDGTNEIGLAVLSTTLCIVAVFLPVAFMGGL 455

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD-WRAKNAR 832
           +      F + +A  + ++   S  +   +     D    K A+
Sbjct: 456 IGRFFLQFGVTVAVAVFISLFVSFTLDPMLSSIWRDPQSQKTAK 499



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 85/261 (32%), Gaps = 18/261 (6%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +   R  D       L       +            +    +   ++    + ++V    
Sbjct: 774  IATARMDDNGKPIMVLLDQVADVVESTAPAQITRKDLSRDIRISSNIEGRTLGDVVADLK 833

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAIT 698
              +  +       I     +  L       +  ++   + IYI +      +   +  I 
Sbjct: 834  AAMTKMDIPVGFRISFGGDAENLTESTAYALQSLAMAVIFIYIILASQFGSFIQPIAIIM 893

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLYTTS 754
            T+ L +   L      G   N+ ++  +L LIG    + +++ D     +R+        
Sbjct: 894  TMPLSLMGVLLGLLFTGSTLNMFSMIGILMLIGLVTKNAILLVDYSNLGVRE-------G 946

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
             S R  +  +    L   V T++A    +LP A+    GG+     A  +  G++ +   
Sbjct: 947  KSLRQSLADAGAVRLRPIVMTTLAMIFGMLPTALGLGEGGAQRAPMAHAIIGGLISSTLL 1006

Query: 812  SIFIAAPILLFIYDWRAKNAR 832
            S+     +L ++  +  +  R
Sbjct: 1007 SLVFVPVVLTYLDAFARRVRR 1027


>gi|329114185|ref|ZP_08242947.1| Multidrug resistance protein MdtB [Acetobacter pomorum DM001]
 gi|326696261|gb|EGE47940.1| Multidrug resistance protein MdtB [Acetobacter pomorum DM001]
          Length = 1063

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/538 (13%), Positives = 144/538 (26%), Gaps = 38/538 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   GLL           +   P                         
Sbjct: 9   RRPVATTLLMLAIFMAGLL-----GYHFLPVSALPQVDYPTIT---------VETFYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D ++  +    +     +              + ITL FA     +    +V   +  
Sbjct: 55  GPDVMSTSVTAPLETQFGQMPGLDQMTSRSSGGASVITLRFALDTSIDVAEQEVQAAINQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            NS L  D     +        + VL+   I        E    +  +   +I       
Sbjct: 115 ANSLLPTDLPAPPVYAKVNPADTPVLT-LGITSSTIPLPEVEDYVDTRLAQKISQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +    +  +L         +       N +     F       +     
Sbjct: 174 LVTLSGGNRKAIRVRVNIPKLTSYGMDLDTLRTTIGNVNVNSPTGTFDGPQKAATLQVDG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +    +               V +  +      +  +T               
Sbjct: 234 QITSADVLLNQVIAYQNNGPIRLRDVATVVVGAENTQLAAWSNLT--------------- 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++        LR    P                S S 
Sbjct: 279 -----PALIMNVQRQPGANVISVVDNVKATLPALRETLPPGIDITPLTDRTTTIRASVSD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G   +   LV+ V+F+ +      ++   S+ L++I TLA++ LL  +L   S+  + 
Sbjct: 334 VQGELFLSLALVVAVIFVFLRNIPATIIPSLSVPLSIIGTLAVMYLLDFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I       +    +   G      TI    I+ +   + L F G
Sbjct: 394 IATGFVVDDAIVMIENISRYVEAGEDRMTAALKGAGEIGFTIISLTISLIAVLIPLLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
              G     FA+T+ ++I++S   ++++V  M   I+  +   +       + +    
Sbjct: 454 DVVGRLFHEFALTLAVTIILSAVVSLTLVPMMCARILSERVHDASSATTAFQRWSARM 511



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 85/244 (34%), Gaps = 12/244 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+A +      +R     +   + +           + +  Q         V++ VK  
Sbjct: 244 QVIAYQNNGPIRLRDVATVVVGAENTQLAAWSNLTPALIMNVQRQPGANVISVVDNVKAT 303

Query: 642 ITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
           +  +                +  +       +G + + ++ +  +I++++R      +  
Sbjct: 304 LPALRETLPPGIDITPLTDRTTTIRASVSDVQGELFLSLALVVAVIFVFLR-NIPATIIP 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++ L I  TL    L     +  ++ A+    G+ V+D +V+ + +    +       
Sbjct: 363 SLSVPLSIIGTLAVMYLLDFSLDNLSLMALTIATGFVVDDAIVMIENI---SRYVEAGED 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                 K   E     +  +++    ++P+   G   G +   FA+ +A  I+++A  S+
Sbjct: 420 RMTAALKGAGEIGFTIISLTISLIAVLIPLLFMGDVVGRLFHEFALTLAVTIILSAVVSL 479

Query: 814 FIAA 817
            +  
Sbjct: 480 TLVP 483


>gi|168229453|ref|ZP_02654511.1| multidrug resistance protein mdtB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194471921|ref|ZP_03077905.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|198244828|ref|YP_002216214.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|207857563|ref|YP_002244214.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|226700679|sp|B5FMU6|MDTB_SALDC RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|226700680|sp|B5R0C0|MDTB_SALEP RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|194458285|gb|EDX47124.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197939344|gb|ACH76677.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205335926|gb|EDZ22690.1| multidrug resistance protein mdtB [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|206709366|emb|CAR33706.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|326623963|gb|EGE30308.1| multidrug resistance protein mdtB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 1040

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRKLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|62180700|ref|YP_217117.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|75482387|sp|Q57MM5|MDTB_SALCH RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|62128333|gb|AAX66036.1| paral putative outer membrane receptor [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 1040

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|322715174|gb|EFZ06745.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 1040

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|320161079|ref|YP_004174303.1| protein-export membrane protein SecF [Anaerolinea thermophila
           UNI-1]
 gi|319994932|dbj|BAJ63703.1| protein-export membrane protein SecF [Anaerolinea thermophila
           UNI-1]
          Length = 308

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 140/297 (47%), Gaps = 15/297 (5%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R+    IS+   I  + ++   GL   IDFKGG  L V        +          +
Sbjct: 6   GKRYLFFAISLAMIIPGLIVMAIFGLPLSIDFKGGSLLEVEFASKTLPAPAEVVALYNDL 65

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
           G    Q      N L+       D V    V E      +      T+   + VGP I +
Sbjct: 66  GITDAQVTTTGNNTLLVRSSFIDDDVRAKVVQE----MNSRFNDTVTVLRFDSVGPTIGK 121

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGFFA----LF 714
           E+  +  + V I+A+A++IYI   F+     + + + AI  +I D+   +   +    LF
Sbjct: 122 EVAGRATLAVSIAALAVIIYITWAFRGVHNAFRYGVCAIIAMIHDVLVVISLVSIGGVLF 181

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G + +   + A+L++IG+SV DKVVV+DR+R+N ++Y   + F  L + SI +TL RS+ 
Sbjct: 182 GWQVDALFLTALLSVIGFSVQDKVVVFDRIRENSQIYRK-LDFEKLANHSIVQTLQRSIN 240

Query: 775 TSMAAF-ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           T +      +L +A++GG  +  FAI +  G+ +   SSIFIAAP L+       +N
Sbjct: 241 TQLMTVEYMLLAIALFGGITLREFAIILLVGLFMGTYSSIFIAAPSLVIWESGEWRN 297


>gi|301345525|ref|ZP_07226266.1| Multidrug resistance protein mexB (Multidrug-efflux transporter
           mexB) [Acinetobacter baumannii AB056]
 gi|301597056|ref|ZP_07242064.1| Multidrug resistance protein mexB (Multidrug-efflux transporter
           mexB) [Acinetobacter baumannii AB059]
          Length = 413

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/438 (12%), Positives = 129/438 (29%), Gaps = 37/438 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G+   +        ++R+P   P               + +  +
Sbjct: 8   QRPIFANVLAIIVMAFGIFSVM-----NLPVERYPDIAPPK-------------ITVSAN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKKEGI----GVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   ++           S    +++IT+SF +    +    +V 
Sbjct: 50  YSGADAQTVEQSVTQILEQQIQGIDHLLYFSSSSDSSGRSRITISFDNGTNPDTAQVQVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + GV  +L  + ++  +  +     + ++         +  IE S  +    +D +  
Sbjct: 110 NSISGVIRRLPDEVQRQGVTVSKSLGDTFMVIGLYDSTGKTGNIELSDYLTTHVVDNLNR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    +P +L+Q     + ++      N        G   + D 
Sbjct: 170 IEGVGETDIFGSQ-YAMRIWLNPDKLKQYNLMPSDVANAITAQNTQVAAGAIGDLPVIDG 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V     +                      +      A   +      +      
Sbjct: 229 QYLNTKVTAGSRL-------------KTVEDFKNIVVKSNKTASYVYLKDIARVELGAEN 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +          S  +  +   T +        L          +    N     
Sbjct: 276 YQSFNTINGYPAAGLGISLSSGANAIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   ++ + ++ T A+L +LG ++   +
Sbjct: 336 ESIKEVVKTLVEAIILVILVMFLFLQSWRATLIPSITVPVVILGTFAVLYVLGFSINTLT 395

Query: 417 IAGIVLGIGLAVDSNILV 434
           +  +VL IGL VD  I+V
Sbjct: 396 LFALVLAIGLLVDDAIVV 413



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 47/117 (40%), Gaps = 3/117 (2%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ +  K+     +   ++      +  +E+++  +  +I+  + M ++
Sbjct: 300 AIQTSKLIHQTLDQLTTKLPAGYKIVYPRDNTPFVQESIKEVVKTLVEAIILVILVMFLF 359

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           +     W   L    T+ + I  T     + G   N   + A++  IG  V+D +VV
Sbjct: 360 LQ---SWRATLIPSITVPVVILGTFAVLYVLGFSINTLTLFALVLAIGLLVDDAIVV 413


>gi|238758866|ref|ZP_04620039.1| Multidrug resistance protein mdtB [Yersinia aldovae ATCC 35236]
 gi|238702974|gb|EEP95518.1| Multidrug resistance protein mdtB [Yersinia aldovae ATCC 35236]
          Length = 1052

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 146/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMIAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F      +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLVLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPTDLPYPPIYSKVNPADPPILT-LAVTSTAIPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   ++                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEDYRNLIVAYQNGAPIRLQDIATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +          +  ++   T ++   +   L           V          S S  
Sbjct: 284 ANSQPAIVLNIQRQPGVNVIATADSIREMLPELIKSLPKSVDVNVLTDRTTTIRASVSDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIVLVVMVIYLFLRNAAATIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            N  + ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSAEDYRNLIVAYQNGAPIRLQDIATIEQGAENNKLAAWANSQPAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   V              +  EL+    
Sbjct: 293 NIQRQPGVNVIATADSIREMLPELIKSLPKSVDVNVLTDRTTTIRASVSDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I  + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 349 --LAIVLVVMVIYLFLR-NAAATIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 75/200 (37%), Gaps = 6/200 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +  V K   EI   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 830  EAVNAVMKAEQEIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPVTILSTLPTAGVGALLALMLTGNELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGAGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRA 828
               ++F    I L       
Sbjct: 1008 QVLTLFTTPVIYLLFDKLAR 1027


>gi|120434421|ref|YP_860129.1| AcrB/AcrD/AcrF family membrane transporter [Gramella forsetii
           KT0803]
 gi|117576571|emb|CAL65040.1| AcrB/AcrD/AcrF family membrane transport protein [Gramella forsetii
           KT0803]
          Length = 1043

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/681 (10%), Positives = 200/681 (29%), Gaps = 55/681 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V++++++  +G++  +            P                    +    
Sbjct: 9   KRPTLAVVIFTIVALLGIVSYVGLGYELLPKITSPQIS--------------ISTIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S L+       + ++  + + +    +   +         +  
Sbjct: 55  SPSEVENSVTTNIEDAVSALEGVKSITSTSQEGISIVNVELTYNADVDQALQDAQRKVNN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L     +  +   +  ++ I+    +       A E +  +     +++   E   
Sbjct: 115 IVGQLPDQVDQPSVDQFSFDDLPIMRLGVSS---QMDANEFNDLVENDIKEKLSRIEGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++    D  +L+    +  +++      N             + +     
Sbjct: 172 RVQVIGGNEREIRVNVDRDKLKGYGLSILQVTQAISAANLDFPTGNIKDDKQQVTVRLSG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  +I G+ +                                   +      V    
Sbjct: 232 KFKDVEDIKGLEITT--------------------GDGSSVRIEDIAEVYDTTKEVATIS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL-NIVEERNVGADLGSDS 360
            +          S ++  +     E      A++ A      L   V + +    L +  
Sbjct: 272 RIDGISSIGLTISKQSDGNTVQVAEDIKAEIAIIEADYTDKNLQIAVAQDSSVFTLEAAD 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +  GLV I++   +   K  ++   SI ++++ T   +  LG TL L ++ G+
Sbjct: 332 AVIFDLLLAVGLVAIIMLFFLRSWKDSIIVMVSIPVSIVATFIAMGQLGYTLNLMTLLGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD +I+V E+I  E  K +S   +    + +   ++    +  +   + + F 
Sbjct: 392 SLVVGILVDDSIVVLEQIHAEMEKGKSRMEAAMESWKKIGLSVMSITLVLIAVFLPITFV 451

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------IDINP 527
            G     ++ FA+ +  +  IS+  + ++   +         ++            +   
Sbjct: 452 TGLIADLLKQFAVVVAFATGISLVVSFTLTPLLSSRFSEVITLRKEKLLHRPLIAFENFL 511

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     R R     +  L     + L+F    +  +      +  V    
Sbjct: 512 QGVNNFYKKALQWTLTRKRVTAFSLLGLVVASLLLLVFGFIGSEFVKNGDNGEFIVELEL 571

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P + ++  +NL +L + DI  Q    +             +        + +     I P
Sbjct: 572 PKESTIEETNLAALAVEDILLQ----DNVVSSVFSTVGTGTGGGGNSSNLAQINAKMISP 627

Query: 648 LSTIQNTEIVGPKISRELIRK 668
                 +E     I  +L + 
Sbjct: 628 DERTITSEQFARDIKIKLTKN 648



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 87/246 (35%), Gaps = 9/246 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           ++       V +  +    ++ +      +        L   +   G++V     ++   
Sbjct: 243 EITTGDGSSVRIEDIAEVYDTTKEVATISRIDGISSIGLTISKQSDGNTVQVAEDIKAEI 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VIISAIAMLIYIWIRFK-WYFALGAI 697
             I        +Q        +        ++  ++++   + I +    + W  ++  +
Sbjct: 303 AIIEADYTDKNLQIAVAQDSSVFTLEAADAVIFDLLLAVGLVAIIMLFFLRSWKDSIIVM 362

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ + I  T       G   NL  +  +  ++G  V+D +VV +++   M+   + +  
Sbjct: 363 VSIPVSIVATFIAMGQLGYTLNLMTLLGLSLVVGILVDDSIVVLEQIHAEMEKGKSRM-- 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +   +S  +     +  ++      LP+    G    ++  FA+ +AF   ++   S F
Sbjct: 421 -EAAMESWKKIGLSVMSITLVLIAVFLPITFVTGLIADLLKQFAVVVAFATGISLVVS-F 478

Query: 815 IAAPIL 820
              P+L
Sbjct: 479 TLTPLL 484



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 91/245 (37%), Gaps = 15/245 (6%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + +  +    ++   + ++       +V        +  QT + EM   +  E      +
Sbjct: 791  ADIEQSTGPSRLERDNKRSSVSIGAQVVGRPVGTVSTEVQTTIEEMEMPEGVEFEMGGDL 850

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGF 710
            ++       +         + +++S + + LI + +   + + L  + ++   +      
Sbjct: 851  ESQTEAFASLG--------LALLMSIVLVYLIMVALYESYAYPLVVMFSVPTAMIGAFLI 902

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             ALF     +     ++ L+G  + + +++ D      +  T  +   + I  +    L 
Sbjct: 903  LALFQESLGVFTFLGLIMLVGLVIKNAILIVD---AANQFKTEGMESVEAIVNAGLSRLR 959

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T++A  I+++P+A     G       A+ +  G+  +   ++ I   + + I  W+
Sbjct: 960  PILMTTLAMVIAMIPIAFASGAGAEWKNGLAMVLIGGLTSSLIFTVIIVPVMYVVIDIWK 1019

Query: 828  AKNAR 832
             +  R
Sbjct: 1020 GEIKR 1024


>gi|114046652|ref|YP_737202.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. MR-7]
 gi|113888094|gb|ABI42145.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. MR-7]
          Length = 1049

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/694 (9%), Positives = 183/694 (26%), Gaps = 49/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFFITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + A++       N        G +   ++D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGMSPAEIIAAVREQNQQAAAGSLGAQPSGNADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I                 +          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIIKVGQNGEVIRLKDVARVELGATSYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L           +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTVFVRGSIH 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + L+G +L   S+ G+
Sbjct: 340 AVVKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLMGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIASGLSPIAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVR---------------AMMIFIIRYKKMKS 522
               G   + FA+T+ +S  IS   ++++                 A+   + +      
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKGHDAPKDALTRLMDKLFGGWL 519

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                            +     RF G+   +   + ++  +       G       Q  
Sbjct: 520 FTPFNRLFNRASEGYGYLVRKVIRFGGIIGLVYLGMVALTGVQFVNTPTGYVPGQDKQYL 579

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D + +      ++       N  G  + +                  +     
Sbjct: 580 VAFAQLPDAASLERTDAVIKKMSDIALNHPGVAHSIAFPGLSINGFTNSPNSGVVFVALD 639

Query: 643 TEIVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
              +      +   +  +++++   I+   + + 
Sbjct: 640 DFELRKRPELSANAIAGQLNQQFAGIQDAFIAIF 673



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 75/239 (31%), Gaps = 11/239 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            N+      D            +         S      +E +  +   I           
Sbjct: 812  NVSQSAGPDRVMHYNGFTTAEINGGPAPGVSSGQAQAAIEKILAETLPIGMTYEWTELTY 871

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                        G++   +  + + + +  +++     L  I  + + +   L    ++G
Sbjct: 872  QQILAGN----TGLLVFPLVILLVFMVLAAQYESLSLPLAIILIIPMTLLSALSGVLIYG 927

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + N+     ++ L+G +  + +++ +  ++        +   + I ++    L   + T
Sbjct: 928  GDNNIFTQIGLIVLVGLATKNAILIVEFAKE---KQDHGMEVMESILEAARLRLRPILMT 984

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            S+A  + V+PM      G  +  +  + +  G++      + +       +     + A
Sbjct: 985  SIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIGVTLFGLILTPLFYYALAKRGRRKA 1043



 Score = 41.2 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 81/228 (35%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L++     I      G     +    +   +       E ++ +I     +
Sbjct: 273 ATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTV 332

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               +   V   +   ++   +V V+               W  ++  +  + + +  T 
Sbjct: 333 FVRGSIHAVVKTLLEAVLLVVLVVVLFLQT-----------WRASIIPLVAVPVSLVGTF 381

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  L G   N  ++  ++  IG  V+D +VV + + +N+    + +S      K++ E 
Sbjct: 382 AFMHLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIA---SGLSPIAATQKAMKEV 438

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 439 TGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|331015191|gb|EGH95247.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 799

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/523 (13%), Positives = 150/523 (28%), Gaps = 42/523 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVD 61
               ++L   I  +G++       P+  +   P A                 +   L   
Sbjct: 15  PVATLLLTFAIVLLGVIA-----FPRLPIAPLPEAEFPT-----------IQVTAQLPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        S       +TL F  ++  +  A +V   +  
Sbjct: 59  SPETMASSVATPLEVQFSAIPGMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINT 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D              S VL   ++   +    E S         Q+   E   
Sbjct: 119 AAGRLPADMPSLPTWRKVNPADSPVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVG 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   + +    +  +  P +L  L  T A +                             
Sbjct: 178 QVFITGQQRPAIRVQAAPEKLAVLGLTLADIRLAV--------------------QQTSL 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +          ++  ++N      +    +      +          +           
Sbjct: 218 NLAKGALYGKDSISTLSSNDQLFKPQDYAQLIVSYKNSAPVQLKDVARVVAGSENAYVKA 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L+          V          S   
Sbjct: 278 WSGDQQGVNIAIFRQPGANIVETVDRIQRELPRLQEMLPATVDVSVLNDRTRTIRASLHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+ V+ + +      L+    + +++I + A++ L G +L   ++  IV
Sbjct: 338 VEMTLLIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E I       Q +  +   G      T+   + + L A + L F G
Sbjct: 398 VAVGFVVDDAIVVVENIHRHLEAGQGMREAAIKGSGEIGFTVVSISFSLLAAFIPLLFMG 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G   + FA+T   +ILIS+  ++++   +    +R     
Sbjct: 458 GVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMRAPTHN 500



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNSAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVETVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPATVDVSVLNDRTRTIRASLHEVEMTLLIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLLAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495


>gi|309778836|ref|ZP_07673607.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Ralstonia sp. 5_7_47FAA]
 gi|308922360|gb|EFP67986.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Ralstonia sp. 5_7_47FAA]
          Length = 1033

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/608 (12%), Positives = 166/608 (27%), Gaps = 45/608 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+            +   P                  +  L    
Sbjct: 10  RPVATALLTIGVALAGIAA-----FRLLPVSPLPQVDFPTI---------SVNASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S     ++ITL F  SR  +  A  V   +   
Sbjct: 56  PETMAATVATPLERSLGRIAGITEMTSSSSLGSSRITLQFDLSRDIDGAARDVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L      N          + ++    +        E           ++       Q
Sbjct: 116 RSLLPSGLPSNPTYRKVNPADAPIMI-VGLTSDTKSRGELYDAASTILAQKLSQINGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P  L +   +   +       N +K   M               
Sbjct: 175 VSIGGASLPAVRVELNPMALNKYGISMETVRTVITSTNANKPKGMME------------- 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  SG  +    AN   K       +                 +   +  + +   
Sbjct: 222 -------SGERVWTIYANDQAKKAVEYQSLIIAWRKGSPVRLADVAEVTDSVQDIRNYGS 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I S +   +   T++    +   LR          V          S    
Sbjct: 275 ANGKPSVLLIISRQPGANIIDTVDRINDVLPYLRNTIPAQINLDVMMDRTPTIRASLKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +   LV++V+F+ +   +  L+   ++ +++I T  ++ L G +L   S+  + +
Sbjct: 335 ERTLVLSIALVIMVVFLFLRNVRATLIPSVAVPVSLIGTFGVMYLCGYSLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +            +   G      T+   + + +   + L   G 
Sbjct: 395 ATGFVVDDAIVVLENVSRHIENGMRPMQAALKGAREVGFTVVSMSFSLIAVFIPLLMMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFF 532
             G   R FA+T+ ++IL+S+  +++    M   +             +  +        
Sbjct: 455 IVGRLFREFAVTLSVAILVSLVVSLTTTPMMCARLLKPAAEEEHGWFHRKTEGFFTFLLD 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L  + +A     +    + +     +     +      +     G +   + A++ +   
Sbjct: 515 LYRNSLAWALRHSWLTLLILLATVCLNVYLYIIVPKGFFPQQDTGRVIGFIQADQSISFQ 574

Query: 593 VVRSNLES 600
            +R+ L  
Sbjct: 575 AMRTKLTD 582



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 86/241 (35%), Gaps = 8/241 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               PV L+ V    +S+Q               L+  +    + +     +  V   + 
Sbjct: 249 RKGSPVRLADVAEVTDSVQDIRNYGSANGKPSVLLIISRQPGANIIDTVDRINDVLPYLR 308

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             +P     +  +      R  ++     +++S   +++ +++  +     L     + +
Sbjct: 309 NTIPAQINLDVMMDRTPTIRASLKDVERTLVLSIALVIMVVFLFLRNVRATLIPSVAVPV 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T G   L G   +  ++ A+    G+ V+D +VV + +    +     +       
Sbjct: 369 SLIGTFGVMYLCGYSLDNLSLMALTVATGFVVDDAIVVLENV---SRHIENGMRPMQAAL 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K   E     V  S +     +P+ + GG V      FA+ ++  I+V+   S+    P+
Sbjct: 426 KGAREVGFTVVSMSFSLIAVFIPLLMMGGIVGRLFREFAVTLSVAILVSLVVSL-TTTPM 484

Query: 820 L 820
           +
Sbjct: 485 M 485



 Score = 40.8 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 91/259 (35%), Gaps = 6/259 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                             +         V  S     +  + +       +     + +  
Sbjct: 750  VMEAAPQYWQSPDGLRDIYVITAAGAQVPLSTFSHYEPTNTALAVNHQGQFAASTISFNL 809

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                + +   + ++  +  I   S++  +     K  ++ +    V ++ + I + I + 
Sbjct: 810  APGASLSGATQDIQDAMNRIGVPSSVHGSFQGTAKAFQDSLSSQPVLILFALITIYIVLG 869

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++ +   +  ++TL       L    +   +F++ A+  V+ LIG    + +++ D  
Sbjct: 870  VLYESYVHPITILSTLPSAGVGALLALIITDTDFSIIALIGVILLIGIVKKNAIMMIDFA 929

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +     +  +S  D I  +        + T+MAA +  LP+A+    G  +     I +
Sbjct: 930  LE--AERSQGMSPADAIFHACVLRFRPILMTTMAALLGALPLALGHGDGAELRTPLGISI 987

Query: 802  AFGIVVAASSSIFIAAPIL 820
              G++V+   +++    + 
Sbjct: 988  VGGLLVSQILTLYTTPVVY 1006


>gi|325982066|ref|YP_004294468.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Nitrosomonas sp. AL212]
 gi|325531585|gb|ADZ26306.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Nitrosomonas sp. AL212]
          Length = 1080

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/528 (12%), Positives = 151/528 (28%), Gaps = 40/528 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     ++L  M   +GLL      +    + +FP   P               + + V
Sbjct: 6   LKRPVMAIVLSLMFLFMGLLA-----MKSLPVAQFPDIAPP-------------RVTVSV 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKV 115
                     ++     L   +    G+   +       +  I + F            V
Sbjct: 48  SFPGASADVLVKSSLILLERAINGVPGMRYITSDATSAGEATIQVYFDQGVDPNIAMVNV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +  + S+L        ++    +   ++          +             I +I 
Sbjct: 108 KARVDQMTSRLPALTNLEGVIVNFVQPSMLMYVNLFSTDKNADQKLLYNYAFVNVIPEIQ 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 Q          +    +P R+R    +   +       +   +    G    + 
Sbjct: 168 RIRGIAQANILGARQYAMRIWLNPERMRVYHVSVDDVMKALGEQSIIGRPGRLGQSTGKA 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           ++  +Y++  K                 K  +    I       +         +    +
Sbjct: 228 AESKEYVLVYKGR-------------FNKPEEYEDIIIRASSEGKILRLKDIAEVDLNSS 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                           +       +    I         L+          +        
Sbjct: 275 SYNIYSDKDGYPSASIVLKQNYNTNAQTVIAETKAKLEELKKSFPEGMDYAINYDVSRFV 334

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV +V+F+ +   +  L+   ++ ++++   A++S  G ++ L 
Sbjct: 335 EASIEQVLHTLVEAFILVSLVVFIFLGDWRSTLIPILAVPVSLVGAFAVMSAFGLSINLI 394

Query: 416 SIAGIVLGIGLAVDSNILVNERIR-EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IG+ VD  I+V E +  +   ++ S + +           I    +  +   
Sbjct: 395 TLFALVLAIGIVVDDAIVVVEAVHAKMADEHCSPYEASRKVLGEIGGAIVAITLVMVSVF 454

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           + + F  G      R F+ITM  SI+IS   A+S+   +   I++   
Sbjct: 455 IPIAFMPGPVGVFYREFSITMASSIIISAIVALSLAPVLCAMILKNTH 502



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 68/490 (13%), Positives = 159/490 (32%), Gaps = 47/490 (9%)

Query: 371 GLVLIVLFMIVLYGKWGL----------VADFSIFLNVILTLALLSLLGATLTLP---SI 417
            + +++  M +  G   +          +A   + ++V    A   +L  +  +    +I
Sbjct: 10  VMAIVLSLMFLFMGLLAMKSLPVAQFPDIAPPRVTVSVSFPGASADVLVKSSLILLERAI 69

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA-YSTIFDSNITALIATVV 476
            G+     +  D+       I+    +      ++    +R    T     +T L   +V
Sbjct: 70  NGVPGMRYITSDATSAGEATIQVYFDQGVDPNIAMVNVKARVDQMTSRLPALTNLEGVIV 129

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            F      +         S   +    +    A +  I   ++++ I    +        
Sbjct: 130 NFVQPSMLM----YVNLFSTDKNADQKLLYNYAFVNVIPEIQRIRGIAQANILGARQYAM 185

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI--------------------DFK 576
            I +   R R + V +  +        +       G                       +
Sbjct: 186 RIWLNPERMRVYHVSVDDVMKALGEQSIIGRPGRLGQSTGKAAESKEYVLVYKGRFNKPE 245

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
               + + A+    +  ++   E            D +      +  +   +     V+ 
Sbjct: 246 EYEDIIIRASSEGKILRLKDIAEVDLNSSSYNIYSDKDGYPSASIVLKQNYNTNAQTVIA 305

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYF 692
             K K+ E+           +   +SR +   I + +  ++ + I + + ++I    W  
Sbjct: 306 ETKAKLEELKKSFPEGMDYAINYDVSRFVEASIEQVLHTLVEAFILVSLVVFIFLGDWRS 365

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  I  + + +       + FG+  NL  + A++  IG  V+D +VV + +    K+  
Sbjct: 366 TLIPILAVPVSLVGAFAVMSAFGLSINLITLFALVLAIGIVVDDAIVVVEAVH--AKMAD 423

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
              S  +   K + E  G  V  ++      +P+A   G V      F+I MA  I+++A
Sbjct: 424 EHCSPYEASRKVLGEIGGAIVAITLVMVSVFIPIAFMPGPVGVFYREFSITMASSIIISA 483

Query: 810 SSSIFIAAPI 819
             ++ +A  +
Sbjct: 484 IVALSLAPVL 493



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 72/251 (28%), Gaps = 10/251 (3%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +  +  Q  +    F +          A+          + E+  
Sbjct: 788  FVKNDEGEMVPLSAFMTMVKRQGPNELTRFNLYNTASIRAEPAKGYTTGDAINAVLEVAE 847

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWI---RFKWYFALGAITTLILD 703
                +  +I    ++ +   +G   + I  + +  +Y+ +      +   L  I +L   
Sbjct: 848  DILPKGFDIAWEGLTYDEAGRGNEALAIFFVVILFVYLVLAAQYESFLLPLAVILSLPPG 907

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I          G+  ++ +   ++ L+G    + V++ +      +     ++       
Sbjct: 908  IFGAFLLLNELGLANDVYSQLGMVMLVGLLGKNAVLIVEFA---SQKQAQGMTVMQAAIA 964

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    ++P+A+  G   I   +       G++      + I   + 
Sbjct: 965  GAQTRFRPILMTSFAFIAGLIPLAMATGAGAIGNRTIGTSALGGMIFGTVFGVIIIPGLY 1024

Query: 821  LFIYDWRAKNA 831
                       
Sbjct: 1025 YIFAKIAEGRK 1035


>gi|126175382|ref|YP_001051531.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           baltica OS155]
 gi|125998587|gb|ABN62662.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS155]
          Length = 1052

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 57/504 (11%), Positives = 135/504 (26%), Gaps = 29/504 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFFITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + A +       N        G +    +D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGLSPADIIAAVREQNQQAAAGSLGAQPSGSADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I                 I          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIIKVGQNGEVNRLKDVARIELGATSYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L  G        +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAKMAELSKGFPEGLTYEIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S+ G+
Sbjct: 340 AVMKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIAAGLSPVAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 GGGAVRGFAITMGLSILISMFTAI 504
            G   + +        + +  +AI
Sbjct: 460 SGLTGQFYKQFALTITISTFISAI 483



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/384 (9%), Positives = 108/384 (28%), Gaps = 9/384 (2%)

Query: 454  MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
             G   A+  IF       + T+  F                 +   +         +   
Sbjct: 663  AGIQDAFIAIFPPPPVQGLGTIGGFRLQIQDRANLGYEALYQVTQQVMYKAWADPQLAGI 722

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
               Y+         + R       +++  +         S   +  +             
Sbjct: 723  FSSYQVNVPQLELDIDRTKAKQQAVSLDQIFQTLQTYMGSTYVNDFNRFGRTYQVNMQAD 782

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            +        +   +  +L+     L S      S                  G   A   
Sbjct: 783  EAFRQSPQQISQLKVPNLNGDMIPLGSFINVSQSSGPDRVMHYNGFTTAEINGGPAAGVS 842

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELI--RKGIVGVIISAIAMLIYIWIRFK-W 690
              +        +        T        ++++    G++   +  + + + +  +++  
Sbjct: 843  TGQAQAAIEKILAETLPNGMTYEWTELTYQQILAGNTGLLVFPLVILLVFMVLAAQYESL 902

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + + +   L    ++G + N+     ++ L+G +  + +++ +  ++    
Sbjct: 903  SLPLAIILIIPMTLLSALSGVLIYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKE---K 959

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                ++  D I ++    L   + TS+A  + V+PM      G  +  +  + +  G++ 
Sbjct: 960  QDHGMAPMDAILEAARLRLRPILMTSIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIG 1019

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
                 + +       +    +K A
Sbjct: 1020 VTVFGLILTPLFYYALAKRGSKKA 1043



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 17/233 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     I      G     +    +   +       E +  +I 
Sbjct: 268 RIELGATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAKMAELSKGFPEGLTYEIV 327

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
               +    + E V   +   ++   +V V+               W  ++  +  + + 
Sbjct: 328 YDPTVFVRGSIEAVMKTLLEAVLLVVLVVVLFLQT-----------WRASIIPLVAVPVS 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K
Sbjct: 377 LVGTFAFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAA---GLSPVAATQK 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
           ++ E  G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 434 AMKEVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|218682179|ref|ZP_03529780.1| acriflavin resistance efflux transporter [Rhizobium etli CIAT 894]
          Length = 661

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/619 (11%), Positives = 177/619 (28%), Gaps = 44/619 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  IG+         +  + RFP+                  +     
Sbjct: 9   RNPIAPLLAFCLLIFIGI-----QSFNKLPITRFPNIDVPLV---------SISVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    ++  + F      E     V   +  
Sbjct: 55  SPAELEMQVTKEIEDAIASITGIDEIQSTVTDGSSQTNVMFRMEVPTEQAVQDVKDAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    +  ++     +  +I     +         E S  +       +       
Sbjct: 115 IRSDLPATAEAPIVTKVDVEGQAIQTFAVSSPD--MSLEELSWFVDDTIKRALQGQAGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E  P++L     T A ++      N         V     +     
Sbjct: 173 RVDRYGGAEREVRIELTPAKLDAHGITAASVNQQLRGTNVDLGSGRGQVAGSEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  E++   +      F   +   V+  +++E  +   F  T               
Sbjct: 233 DARNVAELADTTIALPNGRFVKLSDLGVIKDTYEEPKSFSRFNDTP-------------- 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +   ++      +     G  P     + + +V    G+   
Sbjct: 279 -------VVTFGVFRSKGASEVSVAETVAQSLDKVRGENPNVKIEMIDDSVYFTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+ + +   +  L++  ++ L+ I T  ++ ++G +L L S   + 
Sbjct: 332 AIHTLLEGALLAVIVVLLFLRNWRATLISAIALPLSAIPTFWVMDMMGFSLNLVSFLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    +  ++ + +           +  +  T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIKMGKTPYRAAIEAADEIGLAVIATTFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIR----YKKMKSIDINPLSRFFLI 534
           G   +    F +T+  S+  S+  A  I   M  +++R     +     D   +  +  +
Sbjct: 452 GIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMRAEDGMEDHHDNDSLLMKGYTRL 511

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                          +            L+   G     +    I L V       L   
Sbjct: 512 IRGTTGHKYSRYLTLLAAIGFLVGSVFLLMKVPGSFLPPEDASRIVLSVELPPNARLDDT 571

Query: 595 RSNLESLQIGDISFQNFDG 613
               +++          + 
Sbjct: 572 EKTTDAIYDRVKDINGVES 590



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 68/233 (29%), Gaps = 7/233 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       SF  F+        +    G S                    +       
Sbjct: 260 VIKDTYEEPKSFSRFNDTPVVTFGVFRSKGASEVSVAETVAQSLDKVRGENPNVKIEMID 319

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +       I  ++  + +A+++ +     W   L +   L L    T     + G
Sbjct: 320 DSVYFTYGNYEAAIHTLLEGALLAVIVVLLFLRNWRATLISAIALPLSAIPTFWVMDMMG 379

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL +  A+    G  V+D +V  + +    +      +      ++ +E     + T
Sbjct: 380 FSLNLVSFLALTLATGILVDDAIVEIENI---ARHIKMGKTPYRAAIEAADEIGLAVIAT 436

Query: 776 SMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +       +P++   G        F + +AF +  +   +  I   +  ++  
Sbjct: 437 TFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLMVARLITPMMAAYLMR 489


>gi|308270698|emb|CBX27308.1| Acriflavine resistance protein B [uncultured Desulfobacterium sp.]
          Length = 1059

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/695 (8%), Positives = 164/695 (23%), Gaps = 57/695 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L           + ++P   P                  +   
Sbjct: 9   RPVFAWVIAIVIMAAGGLAI-----YNMPISQYPPIAPPAIAI-------------DAFF 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +            S      ++ ++FA     +    KV  
Sbjct: 51  PGASAETVENTITQIIEQKMTGLDDMLYLSGTSSSSGAARVEMTFAPGTDPDIAWSKVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L    +++ +  +      +++     +     + +            +   
Sbjct: 111 KLQLAMASLPDVVQRSGVKVSKSTRNYLIIVGLISEDGNMSSDDLRDYAQSNLEKVLSRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P +L     T   +       N        G     +  
Sbjct: 171 PGVGEVENFGSQ-YAMRVWVNPDKLNNYHLTMEDVILALEAYNVEVSAGQLGGAPAVEGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                 +      +                              
Sbjct: 230 RLN-------------TAIIVQHLLQTPEEFANVPIITNPDGSVVRIKDIGRTELGTERS 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          +     P    I           
Sbjct: 277 DIEPNYNGKPSAAMAIRQAAGANALDTARAVKQKLEDMSRYFPPGMKVIYPYDTTPFTRV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +++++ +   +  L+   ++ + ++ T A+LS  G ++ + ++
Sbjct: 337 AIEEVVKTLFEAVLLVFLIMYLFMGNIRATLIPTIAVPVVLLGTFAVLSAFGFSVNMLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      +      +     +   S +    +        
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMAEEGLPPREATAKSMTEITSALVGIGLVLSAVFGP 456

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--------- 524
           + FF G      R F++T+  ++L+S+  A+ +   +    ++                 
Sbjct: 457 MAFFQGSTGVLYRQFSVTIIAAMLLSVVVALILTPVLCASFLKPIPAGHEPSDNAIFFLR 516

Query: 525 -------INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
                          +    +   F +   + V   ++                  + +G
Sbjct: 517 PFFRLFDRFFARIRGIYVGIVHRSFSKTIRYLVVYLLIVIAVGFLFQRMPTSYIPDEDQG 576

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + +  +      L      +  ++   +  +    E    V      G           
Sbjct: 577 ILVVQAMLPSGSTLEQTEKVMSRVRNHFLENEKDGVESFLSVAGVSFGGQGQNMALGFAK 636

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           +K       P   ++       +   ++    +  
Sbjct: 637 LKDWKLRQRPDRKVKAIAGRAMRAFSQIKGAMVFA 671



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 92/263 (34%), Gaps = 7/263 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
            ++  H L    +F     +       V +  +       +  DI           +   
Sbjct: 234 AIIVQHLLQTPEEFANVPIITNPDGSVVRIKDIGRTELGTERSDIEPNYNGKPSAAMAIR 293

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
           Q    +++   R ++   + ++   P              +R  I + +  +  + + + 
Sbjct: 294 QAAGANALDTARAVKQKLEDMSRYFPPGMKVIYPYDTTPFTRVAIEEVVKTLFEAVLLVF 353

Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           + +++        L     + + +  T    + FG   N+  + A++  IG  V+D +VV
Sbjct: 354 LIMYLFMGNIRATLIPTIAVPVVLLGTFAVLSAFGFSVNMLTMFAMVLAIGLLVDDAIVV 413

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSF 797
            + +     +    +  R+   KS+ E     V   +       PMA + GS       F
Sbjct: 414 VENV--ERIMAEEGLPPREATAKSMTEITSALVGIGLVLSAVFGPMAFFQGSTGVLYRQF 471

Query: 798 AIPMAFGIVVAASSSIFIAAPIL 820
           ++ +   ++++   ++ I  P+L
Sbjct: 472 SVTIIAAMLLSVVVAL-ILTPVL 493



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 61/182 (33%), Gaps = 7/182 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                    R    +G +    S   + + +   ++ W      +  L L +   +   + 
Sbjct: 864  WTGLSYQERMATTQGPILYAFSIFVIFLCVAALYESWTIPFVNLLMLPLGVLGAILATSF 923

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+  ++      LT +G S  + +++   +++            D    ++       +
Sbjct: 924  RGLPNDVYFQIGFLTTLGLSTKNAILIIQFIKE---RMGHGEGLIDATLGAVKTRFRPVI 980

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS+A F  VLP+A+    G   + +    +  G++ A    +       + +     K 
Sbjct: 981  MTSLAFFFGVLPLAISTGAGAGAMNAIGTAVCGGMLSATLIDLIFIPMFFVLVSKIFKKK 1040

Query: 831  AR 832
             +
Sbjct: 1041 EK 1042


>gi|157144976|ref|YP_001452295.1| multidrug efflux system subunit MdtB [Citrobacter koseri ATCC
           BAA-895]
 gi|166233221|sp|A8AEE6|MDTB_CITK8 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|157082181|gb|ABV11859.1| hypothetical protein CKO_00706 [Citrobacter koseri ATCC BAA-895]
          Length = 1040

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/586 (9%), Positives = 152/586 (25%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +       N +                    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRAAITSANVNSAKGSLDGP----------- 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 233 ---------TRAVTLSANDQMQSVDEYRQLIIAWQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVNVTVLSDRTTNIRASVTDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNVPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   +       K+ +           +I 
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQASLRKQNRFSRAAEKMFDRVIE 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                         + +S+      + ++    +  G        +
Sbjct: 524 KYGQWLAKVLNHPWLTLSVALGTLLLSIMLWVFIPKGFFPVQDNGI 569



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NVPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|15892134|ref|NP_359848.1| acriflavin resistance protein D [Rickettsia conorii str. Malish 7]
 gi|15619262|gb|AAL02749.1| acriflavin resistance protein D [Rickettsia conorii str. Malish 7]
          Length = 1008

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/625 (12%), Positives = 173/625 (27%), Gaps = 53/625 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  +G +     F  +  +   P                   + +E  
Sbjct: 9   KRPVFATVLNLVIVALGAI-----FFTKLQIRGTPDISVPI-------------INVEAH 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +   +    ++    +K            ++ ITLSF  S   E   + V  
Sbjct: 51  YAGADALYMEQEITTRIEKALKTVKNLDYITSQSSTGESSITLSFLLSTDIEVALNDVRA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  +      D K   +          +      DQ     +E +  +       +   
Sbjct: 111 KISDITYMFPQDMKTPSVTKLDADSFPSLFISIESDQYSD--LELTKIVEDNLQTPLDKL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           ES  Q          +  E D  +L Q   +  ++       N          +      
Sbjct: 169 ESVGQSQIYGGREYIMRIEPDSKKLYQHKISLLEIESAIKEQNKDYPAGTIKTKSNNFIV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    E                      +I                 I       
Sbjct: 229 TLAGSLSTPEEFG--------------------NIILKVQNGGIIKLRDIAKISLTSPDE 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +++ +              ++          +          
Sbjct: 269 DIIFRYNGKSSIALGLIKESKANVIDLSHEVTKALERIKESMPKGISMGIAYDAATPVKA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V ++ +   K  L+   +I +++I T +++   G ++ + ++
Sbjct: 329 SIYAVFQTIFEALILVVLVTYLFLASAKITLIPFVTIPVSLIGTFSIMYAFGFSINIFTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I++ E I   N        +  +        I    IT     + +
Sbjct: 389 LAMILAIGLVVDDAIVMLENIFRYNEMGHKPMEAAMLASKEIGFAIIAMTITLAAVFLPV 448

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPL 528
            F  G   +    FA T+   IL S F A+++   M   ++        K +   +    
Sbjct: 449 GFIEGFIGKLFIEFAWTLAFCILFSGFVALTLTPMMSSRMVTKHNTDLPKFLVKFNDILQ 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    + + F   + + + I+  F +  I   FT  +    +  G +Q+ +     
Sbjct: 509 FIQNKYIYYLKLTFDNQKKFVIIIASSFIVLIISFKFTQKIFVPQEDDGFLQVSLKGPEG 568

Query: 589 VDLSVVRSNLESLQIGDISFQNFDG 613
            +L      ++  +    ++++  G
Sbjct: 569 SNLESSTKVVKEAEKILANYKDILG 593



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 82/245 (33%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I L V     + L  +     +    DI F+        L  ++    + +  +  + 
Sbjct: 241 GNIILKVQNGGIIKLRDIAKISLTSPDEDIIFRYNGKSSIALGLIKESKANVIDLSHEVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              ++I E +P               +  I      +  + I +++            L 
Sbjct: 301 KALERIKESMPKGISMGIAYDAATPVKASIYAVFQTIFEALILVVLVTYLFLASAKITLI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T      FG   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 361 PFVTIPVSLIGTFSIMYAFGFSINIFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGH 417

Query: 756 SFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +    T  A F+ V  +  + G +   FA  +AF I+ +   +
Sbjct: 418 KPMEAAMLASKEIGFAIIAMTITLAAVFLPVGFIEGFIGKLFIEFAWTLAFCILFSGFVA 477

Query: 813 IFIAA 817
           + +  
Sbjct: 478 LTLTP 482



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 90/271 (33%), Gaps = 11/271 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              + L F       I     I +    N  + L  + +  E + +   S  N        
Sbjct: 744  YDVILQFNQKDRKDISDFSKILIRAKNNNMLPLESIANITEKISVKSYSHYNNSKSVTIS 803

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              L        A   + ++  K +     +           +         ++  + + I
Sbjct: 804  SDLAPDRKIDDAINEINKIAAKLLDPSNTIIEYIGEIKQMREADS----NMLITFVFALI 859

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  +  +   IT  +    L G   N+ +   ++TLIG    + 
Sbjct: 860  FIYLVLAAQFESFTDPLLILLAVPFSITGGVLALWLAGNSLNMYSNIGLITLIGLITKNS 919

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
            +++ +      +L    +  ++ I +S    L   + T++AA +  LP+    G+     
Sbjct: 920  IMIVEFAN---QLRAKGVKVQEAIIESSKLRLRPILMTTLAAVVGALPLVFADGASAAAR 976

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             S    +  G+ +    +IF+   I      
Sbjct: 977  NSIGFVIVGGLSIGTIFTIFVIPVIYHTFKK 1007


>gi|297198355|ref|ZP_06915752.1| protein-export membrane protein SecD [Streptomyces sviceus ATCC
           29083]
 gi|197714412|gb|EDY58446.1| protein-export membrane protein SecD [Streptomyces sviceus ATCC
           29083]
          Length = 584

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 120/576 (20%), Positives = 218/576 (37%), Gaps = 48/576 (8%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DE 62
             +IL +++   G +    +  P+                LG+DL GG+ + LE      
Sbjct: 20  LALILIAIVALTGGMFLSGHTTPR----------------LGIDLAGGTSITLEAKAEQG 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQG 121
                  +    D +   +   G+    ++   ++ I ++       +   D+V    + 
Sbjct: 64  SAINKANMNTAVDIMNRRVNGLGVSEAEVQTQGDRNIIVNIPKGTNSKEARDQVGTTAKL 123

Query: 122 -VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH----------------AIEQSM 164
                L  D       T+     S   + +                          +   
Sbjct: 124 YFRPVLAQDATGPAAATSPSPSASGSSNASPSPSASKSGTGEKATSSSSPSASATSQGRA 183

Query: 165 EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK 224
                + D    + +      S             ++L+            +        
Sbjct: 184 VTDALKADATPSASAGASSSASPSAPASTAPSAAQAKLQAQYTALDCSKKAQRTKAGEGA 243

Query: 225 GFMFGVRFLRDSDGNQY-LVEDKVEISGIHLNGATANFD-PKTHKPVVDISFDEMGARRF 282
                     +  G  Y  +     ++G  +  A A FD        V ++F+  GA++F
Sbjct: 244 KPGDTTVGCGEYSGVWYKYLLGPAAVAGTEVKKAQAVFDTQNAAGWQVTMTFNSKGAKKF 303

Query: 283 FEVTRDNIGKPLAVV-----LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
            ++T                LDG+V+++P ++ +I  G AQISG+FT + A  LA ML  
Sbjct: 304 ADITGQLAKNTQPQNEFGIVLDGQVVSSPTVSSSITGGSAQISGSFTQDEAQNLANMLSY 363

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           G+LP+         V A LG D ++ G  A   GL L+V++++  Y    LVA  S+ ++
Sbjct: 364 GALPLSFKEQSVTTVTAALGGDQLHAGLLAGAIGLFLVVIYLVAYYRGLSLVAMASLLVS 423

Query: 398 VILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
            ILT  L++LLG      L LP++ G ++ IG+  DS I+  ERIR+E R+ +S+  +++
Sbjct: 424 GILTYVLMALLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERIRDEIREGRSLRPAVE 483

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
             + RA  TI  S+  + +A  VLF    G V+GFA T+GL+ ++ +       + +M  
Sbjct: 484 RAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTVLDVVVVFFFTKPLMTL 543

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           + R K   S           +     ++  R     
Sbjct: 544 LARRKFFASGSKWSGLDPKSLGAKPPLRRTRRPAPA 579



 Score = 94.8 bits (233), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 67/181 (37%), Gaps = 8/181 (4%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G                  +      Q+   V   +  + +  G++   I    ++IY+
Sbjct: 346 SGSFTQDEAQNLANMLSYGALPLSFKEQSVTTVTAALGGDQLHAGLLAGAIGLFLVVIYL 405

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVV 740
              ++   +L A+ +L++    T    AL G       NL AV   +  IG + +  +V 
Sbjct: 406 VAYYR-GLSLVAMASLLVSGILTYVLMALLGPAIGFALNLPAVCGAIVAIGITADSFIVY 464

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++R+R  ++      S R  ++++        + +   +F++   + +     +  FA  
Sbjct: 465 FERIRDEIRE---GRSLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFT 521

Query: 801 M 801
           +
Sbjct: 522 L 522


>gi|149927994|ref|ZP_01916243.1| Acriflavin resistance protein [Limnobacter sp. MED105]
 gi|149823290|gb|EDM82524.1| Acriflavin resistance protein [Limnobacter sp. MED105]
          Length = 1021

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/612 (11%), Positives = 166/612 (27%), Gaps = 48/612 (7%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L+ ++  +GL            + +FP                   +++          
Sbjct: 1   MLFFLLTVMGLYS-----FSSMKIQQFPDIELPT-------------VLVTASLPGASPS 42

Query: 69  FLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            L+       +   + L++       ++     IT+ F   +  +   D V   +  V +
Sbjct: 43  QLENDVARKIENSLATLQQLKHIYTKIQDGIVSITVEFNLEKDTQEAVDDVRSAVSRVRA 102

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
            L  D +  ++         ++                S  +       +   +      
Sbjct: 103 DLPTDLRDPVVNKLELSGAPVLAYTIASTAFDEE--GLSWYVDDTITKTLLNVKGVGAVN 160

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
               +  ++  E DP +++ L  +   +S           G    +            VE
Sbjct: 161 RVGGVTREVVVELDPLKMQALGVSALDVSRQLRNTQLETAGGRADLGVGEQPLRTIATVE 220

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
           +  ++  I +                         RR        I   +A      +L 
Sbjct: 221 NANQLKEISIVL--------------------SNGRRVKLPEIATIKDTIADRRSAALLN 260

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
              +     +     S     +      A L+A    + +       V            
Sbjct: 261 GQDVVGFEITRSKGASEVEVGQGVAKALAELQAQRPDLTIVE-AFNFVEPVEDDFDSSMK 319

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
                A L ++V++  +   +   V+  ++ L+VI   A +  LG +L + S+  + L +
Sbjct: 320 MLYEGAFLAVVVVWFFLRDWRATFVSAVALPLSVIPAFAGMYYLGFSLNVVSLLAMSLVV 379

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---G 481
           G+ VD  I+  E I    R  +S   +           +  +  T +   +   F     
Sbjct: 380 GILVDDAIVEVENIVRHLRMGKSPLDAAREAADEIGLAVIATTFTLIAVFLPTAFMSGIA 439

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G   + F  T  L++  S+  A  +   M  ++++    +S    P        D +   
Sbjct: 440 GKFFKQFGWTAALAVFASLVVARMLTPMMAAYMLKSAGHESEKNEPGKMMAHYLDWVRWA 499

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                   +     F    + +          D     Q+ +           R   E  
Sbjct: 500 LAHRLITCIAAGAFFIGSILLIPLLPTGFIPPDDLSQTQVYIELQPGSTYEQTRKAAEKA 559

Query: 602 QIGDISFQNFDG 613
           +      +    
Sbjct: 560 RELISEVEYVRS 571



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 79/247 (31%), Gaps = 10/247 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +   R V L  + +  +++     +      +       + +    V   + +    
Sbjct: 229 SIVLSNGRRVKLPEIATIKDTIADRRSAALLNGQDVVGFEITRSKGASEVEVGQGVAKAL 288

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++    P  TI         +  +      +    + +A+++  +    W     +   
Sbjct: 289 AELQAQRPDLTIVEAFNFVEPVEDDFDSSMKMLYEGAFLAVVVVWFFLRDWRATFVSAVA 348

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +          G   N+ ++ A+  ++G  V+D +V  + +   ++      S  D
Sbjct: 349 LPLSVIPAFAGMYYLGFSLNVVSLLAMSLVVGILVDDAIVEVENI---VRHLRMGKSPLD 405

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     + T+       LP A      G     F    A  +     +S+ +A
Sbjct: 406 AAREAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFKQFGWTAALAV----FASLVVA 461

Query: 817 APILLFI 823
             +   +
Sbjct: 462 RMLTPMM 468



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 81/200 (40%), Gaps = 7/200 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
            V   V++  +       +    I   ++  EL     + ++   + + + + + FK + 
Sbjct: 802 DVAAAVQQLPSIKSLPPGVAQRNIGDAEVMEELFASFGLAMLTGVLCIFVVLVLLFKDFL 861

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  +  L L +        + G  F++ ++  ++ L+G +  + +++ +     +   
Sbjct: 862 QPVTILAALPLSLGGAFVGLLIAGKSFSMPSLIGLIMLMGIATKNSILLVE--YAIVARN 919

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVV 807
              ++  D +  + ++     + T++A    +LP+A+  G    SF    AI +  G++ 
Sbjct: 920 EKGMNRLDAVVDACHKRARPIIMTTIAMAAGMLPIAIGTGDADTSFRSPMAIAVIGGLMT 979

Query: 808 AASSSIFIAAPILLFIYDWR 827
           +   S+ +   +   + D+ 
Sbjct: 980 STFLSLLVIPVVYTLMDDFE 999


>gi|34498189|ref|NP_902404.1| drug efflux pump transmembrane protein [Chromobacterium violaceum
           ATCC 12472]
 gi|34104044|gb|AAQ60404.1| probable drug efflux pump transmembrane protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 1034

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/626 (10%), Positives = 159/626 (25%), Gaps = 35/626 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P                     L     + +   +    +     +     
Sbjct: 29  FKLLPVSPLPQVDFPTI---------SVSAKLPGASPETMAATVATPLERALGRIAGVTE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +       +TL F   R     A  V   +    S L      N          + +
Sbjct: 80  MTSTSSLGSTNVTLQFDLDRDINGAARDVQAAINAARSLLPTGMPSNPTYRKVNPADAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    +        +           ++   +     +        +  E +P++L    
Sbjct: 140 MI-LALTSDTLSRGQMYDAADSILGQKLSQVDGIGNVIIGGGAQPAVRVEMNPTQLNHYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
                +       N ++                        +                  
Sbjct: 199 IGMETVRAAITSTNANRPKGFLENDERHWQVQANDQAGKASD------------------ 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
              + +                 +   +  + +  +L        I   +   +   T++
Sbjct: 241 --YLPLIVSYKNGSAVRISDVAEVKDSVVDLRNAGMLGKQPAVMLILFRQPGANIIETVD 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
               +   L+A   P                S S  + + AI   LV++V+F+ +  G+ 
Sbjct: 299 RVKAMLPQLQASIPPSIKINQVMDRTPTIRASLSEVERSLAISIALVILVVFLFLRNGRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
             +   ++ ++++ T A++ L G +L   S+  + +  G  VD  I+V E I        
Sbjct: 359 TAIPAITVPVSLVGTFAIMYLAGFSLNNLSLMALTIATGFVVDDTIVVLENISRHIENGM 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTA 503
             F +   G      T+   +I+ +   + +   GG      R FA+T+ ++I++S+  +
Sbjct: 419 QPFQAALRGAREVGFTVLSMSISLIAVFIPILLMGGIIGRLFREFAVTLSVAIMVSLLVS 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           ++    +    ++                   D +   + R+  W +    L        
Sbjct: 479 LTTTPMLCARWLKTHDAHKAPGKLFQWSERAFDAMLNGYRRSLSWALRHGRLMMAVLGAT 538

Query: 564 LFTHGLNYGIDFKGGIQLGV--LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
           +  +   Y +  KG             +      S                 +      +
Sbjct: 539 IALNVFLYTVIAKGFFPQQDTGRLTGMIKADQSISFQAMQGKLQRFINVVGADPAVDKVV 598

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVP 647
            +  G       +   +K        
Sbjct: 599 GFTGGGQRNSANMFVSLKPLAERKEN 624



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 71/169 (42%), Gaps = 10/169 (5%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + +++++++R     A+ AI T+ + +  T     L G   N  ++ A+    
Sbjct: 338 LAISIALVILVVFLFLRNGRATAIPAI-TVPVSLVGTFAIMYLAGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +     +       +   E     +  S++     +P+ + G
Sbjct: 397 GFVVDDTIVVLENI---SRHIENGMQPFQAALRGAREVGFTVLSMSISLIAVFIPILLMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPI---LLFIYDWRAKNARI 833
           G +      FA+ ++  I+V+   S+     +    L  +D      ++
Sbjct: 454 GIIGRLFREFAVTLSVAIMVSLLVSLTTTPMLCARWLKTHDAHKAPGKL 502


>gi|320324622|gb|EFW80699.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320328994|gb|EFW84993.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 1036

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNELVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRNLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGGLRWVLRHQPLTLLAALATLALTVLLYIVVPKGFFPVQ 557



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.8 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I ++        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPETAIYEAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      + +R
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|304410212|ref|ZP_07391831.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS183]
 gi|307302077|ref|ZP_07581835.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica BA175]
 gi|304351621|gb|EFM16020.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica OS183]
 gi|306914115|gb|EFN44536.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella baltica BA175]
          Length = 1052

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/694 (10%), Positives = 181/694 (26%), Gaps = 49/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFFITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + A +       N        G +    +D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGLSPADIIAAVREQNQQAAAGSLGAQPSGSADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I                 I          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIVKVGQNGEVNRLKDVARIELGATSYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L           +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAKMAELSQSFPEGLEYEIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S+ G+
Sbjct: 340 AVVKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIAAGLSPVAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVR---------------AMMIFIIRYKKMKS 522
               G   + FA+T+ +S  IS   ++++                 A+   + +      
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKSHDAPKDALTRLMDKLFGAWL 519

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                            +     RF G+   +   + ++  +       G       Q  
Sbjct: 520 FTPFNRLFSRASDGYGWLVRKVIRFGGIIGLVYLGMVALTGVQFANTPTGYVPGQDKQYL 579

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D + +      ++       N  G  + +                  +     
Sbjct: 580 VAFAQLPDAASLERTDTVIKKMSEIALNHPGVAHSIAFPGLSINGFTNSPNSGVVFVALD 639

Query: 643 TEIVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
                 S   +   +  ++++E   I+   + + 
Sbjct: 640 DFESRKSPALSANAIAGQLNQEFAGIQDAFIAIF 673



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/384 (9%), Positives = 108/384 (28%), Gaps = 9/384 (2%)

Query: 454  MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
             G   A+  IF       + T+  F                 +   +         +   
Sbjct: 663  AGIQDAFIAIFPPPPVQGLGTIGGFRLQIQDRANLGYEALYQVTQQVMYKAWADPQLAGI 722

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
               Y+         + R       +++  +         S   +  +             
Sbjct: 723  FSSYQVNVPQLELDIDRTKAKQQAVSLDQIFQTLQTYMGSTYVNDFNRFGRTYQVNMQAD 782

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            +        +   +  +L+     L S      S                  G   A   
Sbjct: 783  EAFRQSPQQISQLKVPNLNGDMIPLGSFINVSQSSGPDRVMHYNGFTTAEINGGPAAGVS 842

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELI--RKGIVGVIISAIAMLIYIWIRFK-W 690
              +        +        T        ++++    G++   +  + + + +  +++  
Sbjct: 843  TGQAQAAIEKILAETLPNGMTYEWTELTYQQILAGNTGLLVFPLVILLVFMVLAAQYESL 902

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I  + + +   L    ++G + N+     ++ L+G +  + +++ +  ++    
Sbjct: 903  SLPLAIILIIPMTLLSALSGVLIYGGDNNIFTQIGLIVLVGLATKNAILIVEFAKE---K 959

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                ++  D I ++    L   + TS+A  + V+PM      G  +  +  + +  G++ 
Sbjct: 960  QDHGMAPMDAILEAARLRLRPILMTSIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIG 1019

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
                 + +       +    +K A
Sbjct: 1020 VTVFGLILTPLFYYALAKRGSKKA 1043



 Score = 43.9 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 81/233 (34%), Gaps = 17/233 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                     +RS L++     I      G     +    +   +       E ++ +I 
Sbjct: 268 RIELGATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAKMAELSQSFPEGLEYEIV 327

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
               +    + E V   +   ++   +V V+               W  ++  +  + + 
Sbjct: 328 YDPTVFVRGSIEAVVKTLLEAVLLVVLVVVLFLQT-----------WRASIIPLVAVPVS 376

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K
Sbjct: 377 LVGTFAFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAA---GLSPVAATQK 433

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
           ++ E  G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 434 AMKEVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|170721974|ref|YP_001749662.1| acriflavin resistance protein [Pseudomonas putida W619]
 gi|169759977|gb|ACA73293.1| acriflavin resistance protein [Pseudomonas putida W619]
          Length = 1032

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/637 (10%), Positives = 167/637 (26%), Gaps = 38/637 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YKLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + +TL F+     +    +V   +   
Sbjct: 56  PQVMTSAVTAPLERQFGQMPGLTQMASTSSGGASVLTLRFSLDMNMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + VL+   I        + +  +  +   ++        
Sbjct: 116 SNLLPSDLPAPPVYNKVNPADTPVLT-LAISSKTMPLPKLNDLVDTRVAQKLAQIGGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   L       A +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNVDALAANGLNLADVRTLVGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   ++ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLRSPEEYANLILAYNNGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +           V          +    
Sbjct: 275 ANQNQAVLLNIQRQPGANVIEVVDRIKDLLPSITDNLPAGLEVSVLTDRTQTIRAAVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVMVTFVFLRRVSATIIPSIAVPLSLIGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKQEEQGRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             + R   W +    L  + ++  L      Y +  KG   +             +S   
Sbjct: 515 EHYGRGLQWVLRHQPLTLLVAVASLALTVFLYMVVPKGFFPVQDTGVIQGISEAPQSTSF 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           +         +    ++  V+              L 
Sbjct: 575 AAMSERQQSLSTIILQDPAVQSLSSYIGVDGDNATLN 611



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 61/161 (37%), Gaps = 7/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I  + M+ ++++R +    +     + L +  T G   L G   N   + A+    G+
Sbjct: 340 IAIVLVVMVTFVFLR-RVSATIIPSIAVPLSLIGTFGVMYLAGFSINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +      +      K   +     +  + +    ++P+      
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G +   FAI +A  I+++   S+ +   +   +     K 
Sbjct: 456 VGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKQ 496



 Score = 45.8 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +        +S  D I ++        + T++AA    +P+ +    G  + 
Sbjct: 928  IMMIDFALE--AERNQGMSPHDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELR 985

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                + M  G++V+   ++F    I L+      +
Sbjct: 986  QPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRLARR 1020


>gi|224583382|ref|YP_002637180.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|254810277|sp|C0Q1F3|MDTB_SALPC RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|224467909|gb|ACN45739.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 1040

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRLLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRTSVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|323702410|ref|ZP_08114074.1| acriflavin resistance protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323532549|gb|EGB22424.1| acriflavin resistance protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 1044

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/543 (11%), Positives = 151/543 (27%), Gaps = 39/543 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +L   +  +GL       LP+  +D +P       +              E   
Sbjct: 10  RPVAISMLIIALVILGLFS-----LPRLAVDLYPDMELPIAV---------ISTSYEGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S            +   + + + F      +N    +   +  V
Sbjct: 56  PAEVEKLVTKPIEAAVSTAGNVKEISSRSQNGTSLVIVQFNWGTNMDNATIDLREKIDLV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D K   ++     +  I+             ++           ++   +    
Sbjct: 116 KGSLPSDVKSPRVMKLDPNQSPIISLSLTGT----DVVKLKKIAEDTIQPRLERIDGVAS 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S     ++    DP+++     TT++++      N S    +        +      
Sbjct: 172 VSISGGKTREIKVVLDPAKMESYGLTTSQVAQALSSDNISGTAGLVDKGSNETTLRVIGE 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  ++                    V +S    GA          +            
Sbjct: 232 YNNLEDLK------------------KVRVSLPGTGAGSIALGDLATVEDSFQKETKFAF 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                +     +        L     P                S +  
Sbjct: 274 VDGKPSLGLDVMKSTGGNTVQVAKHVFQEVDQLNRTLPPGVQIKTVVDMSKFIQQSINNV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L +++L++ +   +  +V    I +++I T  L+     T+ + S+ G+ L
Sbjct: 334 VYHGLVGGLLAVVILYLFLRNIRSTIVVALVIPISIIATFTLMYFGNQTINMLSLGGLAL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
           G+G  VD +++V E I    +    +  +  +G       +  S +  ++  + + F   
Sbjct: 394 GLGSLVDFSVVVLESIYRYRQNKYGIIEAAKLGTDEVGKAVTASALAQVVVFLPIVFVQG 453

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   +  A+T+  S + ++F A+++V  +   +++                 +     
Sbjct: 454 LAGILFKPMALTVSFSHIAALFAALTLVPMLSSRLLKNVAPPEEAFPQGKTKNPVVLFGR 513

Query: 540 IQF 542
           I  
Sbjct: 514 IMR 516



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 80/218 (36%), Gaps = 7/218 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
                              + + +K ++ ++        T     K   E  +   + +++
Sbjct: 812  QSREVRITADIAGRDLGSINKDIKAQLDKLALPEGYTITFGGQAKDMAESFQDLAMALLL 871

Query: 676  SAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            S + + + +  +F+  F     + +L       +    + G   ++ A+   + L+G  V
Sbjct: 872  SVVLVFMVMAAQFESLFQPFIIMFSLPPTFIGVVFGLGVTGHHLSVPAMIGAIMLVGIVV 931

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
            N+ +V+ D +     L          I ++    L   + T++   +++LP+A  GG   
Sbjct: 932  NNAIVLVDYIN---TLRKRGYERNQAILEAGPVRLRPILMTALTTILALLPLAFGGGEGS 988

Query: 795  GS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                  A+ ++FG+ ++   ++ +   +     D   K
Sbjct: 989  EGQAPLAVVVSFGLTLSTLITLVLVPVVYTIFDDLGKK 1026


>gi|323948465|gb|EGB44446.1| AcrB/AcrD/AcrF family protein [Escherichia coli H120]
          Length = 549

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/545 (10%), Positives = 145/545 (26%), Gaps = 38/545 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSTAMPMTQVEDMVETRVAQKISQISGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 224 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   ++     
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKIVRQDNR 523

Query: 540 IQFMR 544
             +  
Sbjct: 524 RLWPW 528



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|296139651|ref|YP_003646894.1| protein-export membrane protein SecD [Tsukamurella paurometabola
           DSM 20162]
 gi|296027785|gb|ADG78555.1| protein-export membrane protein SecD [Tsukamurella paurometabola
           DSM 20162]
          Length = 538

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 123/534 (23%), Positives = 219/534 (41%), Gaps = 58/534 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD--- 61
           PW  + +  +  I +   +     +                LG+DL+GG+ + L+     
Sbjct: 14  PWKPLAFFGVLLIAVFGLIFFTGDKKPEP-----------KLGIDLQGGTSVTLQATRPD 62

Query: 62  --EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA---DKVT 116
               D  +  L+   D +   +   G+    ++   + + ++       +          
Sbjct: 63  GTVPDSNSPELEQARDIINQRVNGLGVAGSEVKINGSNLVITVP-GEDGDQARTLGQTAR 121

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           L ++ V S +   P+ N              +          A +  ++    R      
Sbjct: 122 LLVRPVLSAVPATPQPN--------------APAPDLTNPDTAKKALLDAKAARQSTDPA 167

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           ++       +      L G  DP   +  L T  K+      P                 
Sbjct: 168 AQQKAASQLNCDATDPLAGNDDP---KLPLVTCGKLENDPKNP----------------- 207

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                       I G  +  A++       + VV + F    A+ + + T +N GK  A 
Sbjct: 208 QPRMVYTLAPSIIDGQSIKNASSGIPQNQAQYVVTLEFTGDAAKAWADYTSNNRGKQAAF 267

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLD +V+TAP IN+ I  G+ QISG+F  ++A  LA +L+ GSLP+       + V A L
Sbjct: 268 VLDSQVITAPQINEPITGGQTQISGSFNQQSAADLANVLKYGSLPLSFKAGTAQTVSATL 327

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS----LLGATL 412
           G DS+  G  A + GLVL++++ +  Y   G++   S+ L++ L   LL      +G +L
Sbjct: 328 GFDSLRAGVIAGLIGLVLVLIYALAYYRALGVLVALSLVLSIALLYGLLVLLGRWIGYSL 387

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            L  IAGI++GIG+  DS ++  ERI++E R  +S   ++  G++ A  TI+  N  +L+
Sbjct: 388 DLSGIAGIIIGIGMTADSFVVYFERIKDEIRDGRSFRSAVPRGWASARRTIWTGNAVSLL 447

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           + VVL+    G VRGFA T+GLS ++ +     +   +++   R        +N
Sbjct: 448 SAVVLYILAVGDVRGFAFTLGLSTVLDVVIVFLVTHPLVVLASRTDFFAKPSMN 501



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 85/262 (32%), Gaps = 18/262 (6%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
              +    + +        +       +         +        +      G +    
Sbjct: 233 PQNQAQYVVTLEFTGDAAKAWADYTSNNRGKQAAFVLDSQVITAPQINEPITGGQTQISG 292

Query: 633 RVLEMVKKKITEIVPL------STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
              +     +  ++              + V   +  + +R G++  +I  + +LIY   
Sbjct: 293 SFNQQSAADLANVLKYGSLPLSFKAGTAQTVSATLGFDSLRAGVIAGLIGLVLVLIYALA 352

Query: 687 RFKWYFALGAITTLILDITKTLGFFA------LFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++   ALG +  L L ++  L +          G   +L+ +A ++  IG + +  VV 
Sbjct: 353 YYR---ALGVLVALSLVLSIALLYGLLVLLGRWIGYSLDLSGIAGIIIGIGMTADSFVVY 409

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++R++  ++      SFR  + +            +  + +S + + +     +  FA  
Sbjct: 410 FERIKDEIRD---GRSFRSAVPRGWASARRTIWTGNAVSLLSAVVLYILAVGDVRGFAFT 466

Query: 801 MAFGIVVAASSSIFIAAPILLF 822
           +    V+       +  P+++ 
Sbjct: 467 LGLSTVLDVVIVFLVTHPLVVL 488


>gi|85716660|ref|ZP_01047629.1| Acriflavin resistance protein [Nitrobacter sp. Nb-311A]
 gi|85696500|gb|EAQ34389.1| Acriflavin resistance protein [Nitrobacter sp. Nb-311A]
          Length = 1031

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/571 (12%), Positives = 174/571 (30%), Gaps = 39/571 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V++  +I  IG+  A         + ++P  +    I+           V    
Sbjct: 9   KRPVLSVVVSLLILLIGMAAA-----YNLPVRQYPK-LSNTVIT--------VTTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +  +       +  Q Q++I +    +        +V   +  
Sbjct: 55  SPDLMQGFITTPIEQAVASAEGVDYITSASTQSQSQIKVYVKLNFDPNAALTEVLSKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   +  +    +++ +T +  +++    + D++   AI  S  + R     +   +   
Sbjct: 115 VRYLIPKEANDPVILKSTGETTAVMYIGFSSDELSGSAI--SDYLTRVVQPILSTVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     TT +++      N           +   +     
Sbjct: 173 SADILGGQTFAMRVWLDPIKMAGRNVTTTEVALAIAANNFQAAAGQTKGYYTISNVSTNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +    ++                +           
Sbjct: 233 DLQS--------------------VEQFKRMTVKAKDGGFVRMEDIATVELAAQSTNASV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +             Q +    +     L   +     P     V   +      S   
Sbjct: 273 AFSGQRAIFIGVQATPQGNPLNIVSGVRALFPDIERNLPPSMKMKVAYDSTKFITSSIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L++I   AL+   G +  L ++  +V
Sbjct: 333 VQNTLIEAVIIVIVVIFLFLASLRSVIIPVVTIPLSLIGVCALMMAAGFSFNLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + ++   +   G       +    IT       + F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHLEEGKTAVQASLQGAREIVGPVISMTITLAAVYAPIGFLG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  ++++S   A+++   M   ++++             F  + D  
Sbjct: 453 GLTGALFREFAFTLAGAVIVSGVIALTLSPMMCSVLLKHGGQGRFATAVDKVFSSVTDRY 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGL 569
             +  R+  +    ++        + F +  
Sbjct: 513 GRKLDRSLDYRPVTALFAVTILGLVGFLYMN 543



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 71/188 (37%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +   +++ +   + +    ++         E+    I  VII  + + +++        
Sbjct: 301 ALFPDIERNLPPSMKMKVAYDSTKFITSSIHEVQNTLIEAVIIVIVVIFLFLA---SLRS 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +          G  FNL  + A++  IG  V+D +VV + +    +   
Sbjct: 358 VIIPVVTIPLSLIGVCALMMAAGFSFNLLTLLAMVLAIGLVVDDAIVVVENIH---RHLE 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              +      +   E +G  +  ++       P+   G   G++   FA  +A  ++V+ 
Sbjct: 415 EGKTAVQASLQGAREIVGPVISMTITLAAVYAPIGFLGGLTGALFREFAFTLAGAVIVSG 474

Query: 810 SSSIFIAA 817
             ++ ++ 
Sbjct: 475 VIALTLSP 482



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 58/155 (37%), Gaps = 6/155 (3%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + I + + +  +F+     L  + ++ + I   L          N+     +LTL
Sbjct: 848  IAFGFALIIIFLVLAAQFESLRDPLVIMISVPMAILGALIPLFFGVATINIYTQVGLLTL 907

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG      +++ +   +        +  R  I+ +    L   + T+ A    +LP+   
Sbjct: 908  IGLISKHGILMVEFANE--LQLKDRLDKRSAIEMAARIRLRPILMTTAAMVTGLLPLLTA 965

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
               G +   S  + +  G+++    ++F+   + +
Sbjct: 966  SGAGAASRFSIGLVVVAGMMIGTLFTLFVLPAVYV 1000


>gi|269138425|ref|YP_003295125.1| acriflavin resistance protein [Edwardsiella tarda EIB202]
 gi|267984085|gb|ACY83914.1| acriflavin resistance protein [Edwardsiella tarda EIB202]
 gi|304558451|gb|ADM41115.1| Multidrug transporter MdtC [Edwardsiella tarda FL6-60]
          Length = 1026

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/600 (12%), Positives = 171/600 (28%), Gaps = 39/600 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + + +  + + +A    L    +   P       +             L     + +   
Sbjct: 12  VATSLLALAITLAGLLGLRLLPVAPLPQVDFPVIM---------VSASLPGASAETMAAS 62

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +     +        S      +I L F   R  +  A  V   L    S L   
Sbjct: 63  VATPLERALGRIAGVNEMTSSSSLGTTRIILQFNLDRNIDGAARDVQAALNAAQSLLPSG 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                         + +     +        +       +   +I   +           
Sbjct: 123 MPSRPSYRKANPSDAPIAI-LTLTSTQYTQGDLYDLASTRLAQKIAQIDGVGDVSVGGSS 181

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           L  +  +  P  L     +   +       N  +          R    +   +      
Sbjct: 182 LPAVRIDLSPDALFNQGTSLDTVRQAIASANVRRPLGAVADDEHRWQVQSNDTLMKA--- 238

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                            +    +                 I   +  V +  +       
Sbjct: 239 -----------------QDYRPLIIRYRDGAPLRLQDVAQISDGVEDVRNAGMSNGQPAI 281

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +    A  +   T++        LRA         + +        S    + + AI 
Sbjct: 282 LIMIRRSADANIIETVDRLRSDLPALRALLPSGVSLDIAQERTPTIRASLREVEQSLAIA 341

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
            GLV++V+F+ +   +  L+   ++ +++I T A + L G +L   S+  + +  G  VD
Sbjct: 342 IGLVILVVFLFLRSARATLIPAVTVPVSLIGTCAAIYLCGFSLNNLSLMALTIASGFVVD 401

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VR 486
             I+V E I        S   +  +G      T+F  +++ +   + L F GG       
Sbjct: 402 DAIVVLENIARHIENGLSPRRAALVGVREVGFTVFSISLSLVAVFIPLLFMGGIPGRLFH 461

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYK------KMKSIDINPLSRFFLIPDCIAI 540
            FAIT+ +SI IS+  A+++   M   ++R +      +  ++              ++ 
Sbjct: 462 EFAITLSVSIAISLLIALTLTPMMCACLLRPRRDDGGGRPTALRRLSALLQQGYARSLSW 521

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
               AR+  + +  +  +     +      +     G +   + A++ +    +R  L+ 
Sbjct: 522 TLDHARWVLLMLLAVIGLNIWLYISIPKTFFPQQDTGRLMGFIQADQSISFQAMRGKLQD 581



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 60/150 (40%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + +++++++R      L    T+ + +  T     L G   N  ++ A+    
Sbjct: 338 LAIAIGLVILVVFLFLR-SARATLIPAVTVPVSLIGTCAAIYLCGFSLNNLSLMALTIAS 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +     +S R      + E        S++     +P+   G
Sbjct: 397 GFVVDDAIVVLENI---ARHIENGLSPRRAALVGVREVGFTVFSISLSLVAVFIPLLFMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G        FAI ++  I ++   ++ +  
Sbjct: 454 GIPGRLFHEFAITLSVSIAISLLIALTLTP 483



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 91/217 (41%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   + +++ +T +    +++ T      + ++     ++ ++ +   
Sbjct: 803  TISFNLPPDGSLSDASDAIERAMTALGTPPSLRGTFAGTALLFQQAQSSQLLLILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGMLYESYIHPLTILSTLPSAGVGALLALMLFNAPFSLIALIGIMLLIGLVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D            +S RD I ++        + T++AA    LP+A     G  +  
Sbjct: 923  LLVD--FALTAEREQHLSARDAIYQACQLRFRPILMTTLAALFGALPLAFSYGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G++V+   +++    + L++   RA+ +R
Sbjct: 981  PLGITIVGGLLVSQILTLYTTPVVYLYMEKLRARVSR 1017


>gi|257092242|ref|YP_003165883.1| acriflavin resistance protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257044766|gb|ACV33954.1| acriflavin resistance protein [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 1030

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/622 (11%), Positives = 162/622 (26%), Gaps = 45/622 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +   G++           +   P+                    L   
Sbjct: 9   RRPVMTTLLIAAVVVFGIIA-----YRALPVAELPTVDFPTI---------AVTANLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        +  Q    ITL F   R  +  A  V   +  
Sbjct: 55  SPETMAAAVATPLESQFSTIAGLDSMTSTSAQGSTAITLQFTLDRNIDAAAQDVQSAISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +                +     +          +     Q   ++       
Sbjct: 115 ALRKLPPNLPAPPSFRKVNPADQPIFY-VAMSSATLPLPIVNEYAETQLAQRLSTIPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    +P +L        ++       N ++   MF       +  +  
Sbjct: 174 QVQVFGAQKYAVRIRANPDQLAARGIGIDELQQAVAQANVNQPVGMFDGSRQTFAIKDNG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D                          +                     +       
Sbjct: 234 QLADAA--------------------AYRPLIVAWRNGAPVRLDDVATPIDSVENNKIAS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+++   +    +A         +      +   S   
Sbjct: 274 WNVDKRAIVLAIQRQPGANTIETVDSIRKILPGFKAKLPAAIDMNILYDRSLSIRESIDD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LVL+V+ + +      L+   ++ ++VI T A + +LG +L   S+  + 
Sbjct: 334 VQFTLLLAGFLVLVVILLFLRNLSATLIPSLALPISVIGTFAAMHVLGYSLDNLSLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E I       ++ F +   G      TI    I+ +   + + F G
Sbjct: 394 LAVGFVVDDAIVMLENIVRHLEAGEAPFEAAIRGAREIGFTIVSMTISLVAVFIPVLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRF 531
              G  +  FA+T+ ++IL+S F ++++   +              +  ++ D    +  
Sbjct: 454 GIVGRLLHEFAVTICIAILVSGFVSLTLTPMLCSRYLKPAGSAQHGRLFRAFDSFFAALL 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +A    R R          ++                  G +       +    
Sbjct: 514 GGYERSLAWAMARPRLILASFFASLALVVAMFAMVPKDFIPSGDSGRLIAFTEGAQDASF 573

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
           + +  +  +L        N   
Sbjct: 574 AAMVEHQRALAEIVAKDPNIRS 595



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/204 (10%), Positives = 71/204 (34%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           + +++     ++     +         I   +       ++   +
Sbjct: 285 IQRQPGANTIETVDSIRKILPGFKAKLPAAIDMNILYDRSLSIRESIDDVQFTLLLAGFL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +         L     L + +  T     + G   +  ++ A+   +G+ V+D +
Sbjct: 345 VLVVILLFLRNLSATLIPSLALPISVIGTFAAMHVLGYSLDNLSLLALTLAVGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +   ++      +  +   +   E     V  +++     +P+   GG V   + 
Sbjct: 405 VMLENI---VRHLEAGEAPFEAAIRGAREIGFTIVSMTISLVAVFIPVLFMGGIVGRLLH 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ +   I+V+   S+ +   +
Sbjct: 462 EFAVTICIAILVSGFVSLTLTPML 485



 Score = 45.8 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 53/123 (43%), Gaps = 5/123 (4%)

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            +F ++ +L A   V+ LIG    + +++ D      +     +  +  I ++        
Sbjct: 902  IFNVDLSLYAFVGVIMLIGIVKKNAIMMIDFALD--RQRNDRMPAQAAIFEACLIRFRPI 959

Query: 773  VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + T+MAA    LP+A+    G  V     + +  G++V+   ++++   I L++     +
Sbjct: 960  MMTTMAALAGTLPIALGLGAGAEVRRPLGLAVVGGLLVSQFLTLYLTPVIYLYLDRLTGQ 1019

Query: 830  NAR 832
              R
Sbjct: 1020 RLR 1022


>gi|196230101|ref|ZP_03128964.1| acriflavin resistance protein [Chthoniobacter flavus Ellin428]
 gi|196225698|gb|EDY20205.1| acriflavin resistance protein [Chthoniobacter flavus Ellin428]
          Length = 1028

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/618 (11%), Positives = 168/618 (27%), Gaps = 40/618 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I   GL       + Q       +   K            ++ +    
Sbjct: 9   RRPVVATVLSLLILVAGLQSIRNLNVRQYPRSDIATITVK------------TYFI--GA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+    ++  +             Q  + IT+    +        ++   L  
Sbjct: 55  AADLVRGFITTPLEKAIASADGIDYLESQSAQGLSIITVHLKLNYDTNAALTQIQSKLAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  + +   +          ++   + D       + +  + R    ++       
Sbjct: 115 VRNDLPPESQAPTIELQMSDSQYAIMY-ISFDSTTMDPSQVTDYLTRVVQPKLTAVSGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +       R+  L  + +++       N                     
Sbjct: 174 KADILGARLFAMRIWLKGDRMAALNISPSQVQAALAANNYLSALGTTKGSMT-------- 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       +    AN D  T +    +   +            ++           
Sbjct: 226 ------------VIDLIANTDLHTPEEFAQLVIRQQNGAIVRLKDIADVELGAEDYDMDV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    I+        +           V          +   
Sbjct: 274 RFNGKKAVFMGIWVMPTANSLDVIDGVRAALPEIEKQLPVGMKMDVPYDGTRYIRDALHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  ++   +I +++I    L+   G TL L ++  IV
Sbjct: 334 VIHTLTETLLIVVVVIFLFLGSIRAVIIPVVAIPISLIGAAFLMLAFGFTLNLLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +       +    +           I    IT       +   G
Sbjct: 394 LSVGLVVDDAIVVVENVERHLHLGEPPHMAALKAARELVGPIIAMTITLAAVYAPIGIQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF--LIPD 536
              G   R FA T+  ++++S   A+++   M   ++R           ++R F  +   
Sbjct: 454 GLTGTLFREFAFTLAGAVIVSGIVALTLSPMMSSQLLRAGDSHKGFAGWINRRFDGIRHR 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            + +     R+  V +++   +  +   F+      +  K    + +        S +  
Sbjct: 514 YMRLLANSLRWRPVTLTLAVIVMMLIAPFSMFSLKELAPKEDQGVILGIVNASPNSTIEQ 573

Query: 597 NLESLQIGDISFQNFDGE 614
                +  +  FQ+    
Sbjct: 574 TARYTEKVNDVFQSIPEN 591



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 85/239 (35%), Gaps = 13/239 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V      D+ +   + +     +     F G   +++               L  ++K++
Sbjct: 254 VRLKDIADVELGAEDYDMDVRFNGKKAVFMG--IWVMPTANSLDVIDGVRAALPEIEKQL 311

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
              + +    +          E+I      ++I  + + +++         +  +  + +
Sbjct: 312 PVGMKMDVPYDGTRYIRDALHEVIHTLTETLLIVVVVIFLFLG---SIRAVIIPVVAIPI 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLI 761
            +         FG   NL  + A++  +G  V+D +VV     +N++ +           
Sbjct: 369 SLIGAAFLMLAFGFTLNLLTLLAIVLSVGLVVDDAIVVV----ENVERHLHLGEPPHMAA 424

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            K+  E +G  +  ++       P+ + G   G++   FA  +A  ++V+   ++ ++ 
Sbjct: 425 LKAARELVGPIIAMTITLAAVYAPIGIQGGLTGTLFREFAFTLAGAVIVSGIVALTLSP 483



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 80/241 (33%), Gaps = 12/241 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L+S        +        ++             +VLE   K+I           T 
Sbjct: 776  AKLKSSAEPRTLNRFQQLNSAKILGAVPPGITLDQGLKVLEEKAKEILPKGFTIDYGGTA 835

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                     L       +I S I + + +  +F+ +      +   +         F+  
Sbjct: 836  RQLRTEGDSLTTT----MIFSVILIFLVLAAQFESFRDPFIILLGSVPLAISGALMFSFL 891

Query: 715  GIE-FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    N+ +   ++TL+G    + +++ +       L  T ++    + ++    L   +
Sbjct: 892  GFTTLNIYSQVGLITLVGLVAKNGILIVEFAN---HLQETGLTKVKAVTEAAGTRLRPIL 948

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS+A      P+ +    G +   S  I +  G++V    ++F+   I + +   R K 
Sbjct: 949  MTSVATVAGHFPLVIATGPGAAARNSIGIMLVSGMIVGTILTLFVLPSIYVLVARTRQKV 1008

Query: 831  A 831
             
Sbjct: 1009 K 1009


>gi|171912793|ref|ZP_02928263.1| AcrB/AcrD/AcrF cation/multidrug efflux pump [Verrucomicrobium
           spinosum DSM 4136]
          Length = 1033

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/625 (12%), Positives = 182/625 (29%), Gaps = 41/625 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++    +++   I  +G        +    + ++P     + I            +    
Sbjct: 11  KHPVLAIVVNLAIVLVG-----WKSISSLPVQQYPKIESSSII---------ITTLYYGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +   GFL    + + S +        + R   + +T+    +        +VT  LQ 
Sbjct: 57  SAETARGFLTTPIERVVSQIGGVDYVDSTSRAGISTVTVHLKLNHNITAALAEVTARLQQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  + +  ++               +           +  + R    Q+       
Sbjct: 117 VRTELPPEAEPPVVEVQRADRPYATFY-LSFSSSERSVPAVTDWLTRSLQPQLATLPGVQ 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +        I +    DP RL  L  +   +       N            +        
Sbjct: 176 RVTIEGGRQIAMRIWIDPDRLAALNLSPGDVHAALRRNNYLAAVGRTKGNLVE------- 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN D ++     ++   +            N+           
Sbjct: 229 -------------INLLANTDLRSKDEFANLIVADREGALVRLSDVANVELGAEDPDLIA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +      A +R          +          +   
Sbjct: 276 KHDKKEGVYLGVWPLIGSNEIDVAKNLEEEMARIRPTLPKDIEMSLVWDGTMFMRSALKE 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V + +F+ +   +  LV   ++ +++I   A++   G +L L +I  IV
Sbjct: 336 ISKTLVETVLIVGLAVFLFMGSLRTALVPLIAMPISLIGAAAIMLACGFSLNLLTILAIV 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +       +S   +  +G       I    IT  +    + F G
Sbjct: 396 LAVGLVVDDAIVVVENVERHVHAGKSRTQAALIGARELVGPIIAMTITLAVVYAPIGFQG 455

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIR---YKKMKSIDINPLSRFFLIP 535
           G        FAIT+  ++++S F AI++   M    +     +   +  +N +       
Sbjct: 456 GLTGSLFLEFAITLAAAVVVSGFVAITLSPMMSSKFVHPQGRESWLTRLVNRIFERVRRA 515

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             + +       W + +  +  + +    +          +    + +  + P D ++  
Sbjct: 516 YGVMLDGALQIRWAIVLVAVMVMFAAWPFYMFSEKELAPVEDQSHISLFLDTPPDSTIES 575

Query: 596 SNLESLQIGDISFQNFDGEKNFLVR 620
           +N ESL++ D      + E  + + 
Sbjct: 576 ANRESLRLVDAITAFHEAEYMWSLT 600



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 93/239 (38%), Gaps = 13/239 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  +   ++ +   + + +   D     + G   + +    +   +      +  ++  +
Sbjct: 256 VRLSDVANVELGAEDPDLIAKHDKKEGVYLGV--WPLIGSNEIDVAKNLEEEMARIRPTL 313

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            + + +S + +  +      +E+ +  +  V+I  +A+ +++        AL  +  + +
Sbjct: 314 PKDIEMSLVWDGTMFMRSALKEISKTLVETVLIVGLAVFLFMG---SLRTALVPLIAMPI 370

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLI 761
            +          G   NL  + A++  +G  V+D +VV     +N++ +     S     
Sbjct: 371 SLIGAAAIMLACGFSLNLLTILAIVLAVGLVVDDAIVVV----ENVERHVHAGKSRTQAA 426

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                E +G  +  ++   +   P+   G   GS+   FAI +A  +VV+   +I ++ 
Sbjct: 427 LIGARELVGPIIAMTITLAVVYAPIGFQGGLTGSLFLEFAITLAAAVVVSGFVAITLSP 485



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 59/171 (34%), Gaps = 10/171 (5%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG---FFALFGIE-FNLT 721
                 + V +    +LIY+ +  ++      +  L+  +   +     F   G    N+ 
Sbjct: 842  KEGSALTVTLGFAVVLIYLVLAAQFRSFRDPLIVLVGSVPLAISGALIFTFLGFTTINIY 901

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            +   ++TL+G    + +++     +   L    +     + ++    L   + TS A   
Sbjct: 902  SQVGLITLVGLIAKNGILIVQFANE---LQLQGLEKAAALREASMTRLRPVLMTSAATVF 958

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               P+ +    G     S  I +  G++V    ++F+       I +    
Sbjct: 959  GHFPLVLVTGPGAEARNSIGIVLVTGMIVGTLFTLFVVPVFYSLIAEQHKP 1009


>gi|77458747|ref|YP_348253.1| acriflavin resistance protein [Pseudomonas fluorescens Pf0-1]
 gi|77382750|gb|ABA74263.1| multidrug efflux system transmembrane protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 1034

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/583 (11%), Positives = 159/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YRLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + +TL F+     +    +V   +   
Sbjct: 56  PDVMTSAVTAPLERQFGQMPGLTQMASTSSGGASVLTLRFSLDINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKIAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANGLNLSDVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN    + K   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLTSPKDYANLILAYANGAPLRLKDVAQIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANQNQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIALVVMVTFLFLRRASATIIPSVAVPLSLIGTFGVMYLAGFSVNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENIARFIEEGDSPMQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +                 D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPEPHEQGRFYRASGAFIDWMI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +    L  + +I  L      Y +  KG   + 
Sbjct: 515 AAYGRKLQWVLRHQPLTLLVAIGTLALTVFLYMVVPKGFFPVQ 557



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 67/162 (41%), Gaps = 9/162 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+ ++++R +    +     + L +  T G   L G   N   + A+    G+
Sbjct: 340 IAIALVVMVTFLFLR-RASATIIPSVAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      S      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---ARFIEEGDSPMQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           V+      FAI +A  I+++   S+ +   +   +     + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPEP 496



 Score = 45.8 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
               T  ++    I ++        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERTQGMAPEQAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      +  R
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLGRRWGR 1023


>gi|113969418|ref|YP_733211.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. MR-4]
 gi|113884102|gb|ABI38154.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. MR-4]
          Length = 1049

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/694 (10%), Positives = 184/694 (26%), Gaps = 49/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFFITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + A++       N        G +   ++D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGMSPAEIIAAVREQNQQAAAGSLGAQPSGNADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I                 +          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIIKVGQNGEVIRLKDVARVELGATSYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L           +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTVFVRGSIH 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + L+G +L   S+ G+
Sbjct: 340 AVVKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLMGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIASGLSPIAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVR---------------AMMIFIIRYKKMKS 522
               G   + FA+T+ +S  IS   ++++                 A+   + +      
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKGHDAPKDALTRLMDKLFGGWL 519

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                            +     RF G+   +   + ++  +       G       Q  
Sbjct: 520 FTPFNRLFNRASEGYGYLVRKVIRFGGIIGLVYLGMVALTGVQFVNTPTGYVPGQDKQYL 579

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D + +      ++       N  G  + +                  +     
Sbjct: 580 VAFAQLPDAASLERTDAVIKKMSDIALNHPGVAHSIAFPGLSINGFTNSPNSGVVFVALD 639

Query: 643 TEIVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
              +  S   +   +  +++++   I+   + + 
Sbjct: 640 DFELRKSPELSANAIAGQLNQQFAGIQDAFIAIF 673



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 75/239 (31%), Gaps = 11/239 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            N+      D            +         S      +E +  +   I           
Sbjct: 812  NVSQSAGPDRVMHYNGFTTAEINGGPAPGVSSGQAQAAIEKILAETLPIGMTYEWTELTY 871

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                        G++   +  + + + +  +++     L  I  + + +   L    ++G
Sbjct: 872  QQILAGN----TGLLVFPLVILLVFMVLAAQYESLSLPLAIILIIPMTLLSALSGVLIYG 927

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + N+     ++ L+G +  + +++ +  ++        +   + I ++    L   + T
Sbjct: 928  GDNNIFTQIGLIVLVGLATKNAILIVEFAKE---KQDHGMEVMESILEAARLRLRPILMT 984

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            S+A  + V+PM      G  +  +  + +  G++      + +       +     + +
Sbjct: 985  SIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIGVTLFGLILTPLFYYALAKRGRRKS 1043



 Score = 41.2 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 81/228 (35%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L++     I      G     +    +   +       E ++ +I     +
Sbjct: 273 ATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTV 332

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               +   V   +   ++   +V V+               W  ++  +  + + +  T 
Sbjct: 333 FVRGSIHAVVKTLLEAVLLVVLVVVLFLQT-----------WRASIIPLVAVPVSLVGTF 381

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  L G   N  ++  ++  IG  V+D +VV + + +N+    + +S      K++ E 
Sbjct: 382 AFMHLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIA---SGLSPIAATQKAMKEV 438

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 439 TGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|85702820|ref|ZP_01033924.1| hypothetical protein ROS217_18802 [Roseovarius sp. 217]
 gi|85671748|gb|EAQ26605.1| hypothetical protein ROS217_18802 [Roseovarius sp. 217]
          Length = 1032

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/512 (13%), Positives = 143/512 (27%), Gaps = 39/512 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   +I   G+       L    +   P                         
Sbjct: 9   RRPVLAAVASLLIVIFGMAA-----LRDIPVRELPDVDNAVVT---------VTTTYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +          RQ ++++T+ F  S   +  A+ V   +  
Sbjct: 55  APEVIDTDITETVEGAIASISGIRTISSESRQGRSRVTVEFETSVDIDVAANDVRDAVGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +  +  +V +      ++      D       E +  I R  +D+    +   
Sbjct: 115 VRGDLPEEADEPQVVKSDADADPVMRLAVTSD--RMTTAEITDYIDRFVVDRFATLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D   L     T A +       N             + +     
Sbjct: 173 NVEIIGDQPFAVRIWLDRRALAARNLTVADVEAALRRNNLELPAGDVESTNRQLTVRLNS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +   I L+              V     +         T               
Sbjct: 233 RLRSIEDFRDIVLDRMAGYPIRLRDVARVVPGVADDSTIVRTNGTDA------------- 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++Q +     +        L          IV   +      S   
Sbjct: 280 -------VGVQVLRQSQSNTLAISKAVRAEIKTLAPNLPAGMRIIVGSDDALFVGASIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I   LV+ V+ + +      LV   +I +++I +  L+ + G +L   ++  ++
Sbjct: 333 VVVALFISLALVIAVILLFLRSIPATLVPFITIPVSLIGSFLLIGIWGFSLNTLTLLALL 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I+      +S   +   G  +    +  +++T +   V L F  
Sbjct: 393 LSIGLVVDDAIVVLENIQRRIEDGESPLVASMHGARQVTFAVIATSLTLIAVFVPLSFMP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAM 510
           G   R    F   M  ++ IS F A+S   A+
Sbjct: 453 GQVGRLFVEFGWVMAGTVAISTFVALSACPAL 484



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 76/231 (32%), Gaps = 7/231 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +  +       +    +   +  L+    +++A ++ +    K +   +P     
Sbjct: 257 DVARVVPGVADDSTIVRTNGTDAVGVQVLRQSQSNTLAISKAVRAEIKTLAPNLPAGMRI 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFF 711
                        IR+ +V + IS   ++  I          L    T+ + +  +    
Sbjct: 317 IVGSDDALFVGASIREVVVALFISLALVIAVILLFLRSIPATLVPFITIPVSLIGSFLLI 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            ++G   N   + A+L  IG  V+D +VV + +    +      S          +    
Sbjct: 377 GIWGFSLNTLTLLALLLSIGLVVDDAIVVLENI---QRRIEDGESPLVASMHGARQVTFA 433

Query: 772 SVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
            + TS+      +P++   G V      F   MA  + ++   ++     +
Sbjct: 434 VIATSLTLIAVFVPLSFMPGQVGRLFVEFGWVMAGTVAISTFVALSACPAL 484



 Score = 39.7 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 69/165 (41%), Gaps = 8/165 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +  +++ + + + +  +F+ +   L  + T+ + I   +   A  G+  N+ +   ++ L
Sbjct: 853  LVFLLALLIVYLVLAAQFESFVHPLVIMLTVPIGIAGAIYAMAAGGLSLNVYSQIGIILL 912

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG    + +++ +      +L     + R+ + ++    L   + T+++  +  +P+   
Sbjct: 913  IGLISKNGILIVEFAN---QLRDEGYAVREAVIEASVLRLRPIMMTAVSTILGAVPLITA 969

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G     +    +  G+ +A +  +F+  PIL  +     K  
Sbjct: 970  SGAGAESRIAVGTVIIAGLAMATTLMLFV-TPILYDLMARFTKPR 1013


>gi|320093776|ref|ZP_08025623.1| protein-export membrane protein SecD [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319979277|gb|EFW10773.1| protein-export membrane protein SecD [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 644

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 124/567 (21%), Positives = 218/567 (38%), Gaps = 58/567 (10%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  ++  +    AL        +   P         L LDL+GG+ L+L   
Sbjct: 6   RRPV-RSLVVLLVAMVAAGAALVIGHVTKGVSYVPD--------LALDLQGGTQLILTPK 56

Query: 62  ED-----DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKV 115
                  +     +      +R+ +   G+    +     + IT+S       +   D +
Sbjct: 57  ATAEGQREITENDITQAISIIRNRIDASGVAESEITSMGNSNITVSIP-GTPSQETLDLI 115

Query: 116 TLFLQGVNSKL--------------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
               Q     +                         +     S                 
Sbjct: 116 RSSSQMNFRPVLRMGAATGVRQDASQTQANDPSGSQSGSDSQSGAGQSAQEPDQQDAQSG 175

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG-TTAKMSFHKVLPN 220
           Q +         +  ++       S       P   D   + + +      +        
Sbjct: 176 QQVSTAMDPATALATADQDKDGRLSDAPASTPPNASDLGWVTEQVMYDFLTLDCSAAADA 235

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLN-----GATANFDPKTHKPVVDISFD 275
           +  +G         DS+G    +   V + G  L          +    T +  VD+ F+
Sbjct: 236 SRTEGAADKPYAACDSNGQIKYILGPVTVPGSDLKAASAGQVRNSTGQTTGEWGVDLQFN 295

Query: 276 EMGARRFFEVTRDNIG------------------KPLAVVLDGRVLTAPVINQAIPSGKA 317
           + G + F E +    G                     AVVLDG V+TAP +N  IP+G+A
Sbjct: 296 DAGTQAFSESSTILYGFHSQDAQGSSFYRGSPDRNHFAVVLDGTVITAPSMNAVIPNGQA 355

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+GNFT  +A  LA  L  GSLP+   +  E+ + A LGSD + KG  A V G  L++L
Sbjct: 356 QITGNFTATSAASLANQLSFGSLPLNFEVESEQQISATLGSDHLEKGLWAAVIGFALVIL 415

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGA----TLTLPSIAGIVLGIGLAVDSNIL 433
           ++I  Y    +++  S+ +  ++T  +++LL       L+L  +AG+++ IG+  DS I+
Sbjct: 416 YLIWQYRGLAVISAGSLIIATVITYQVIALLSWLMGYRLSLAGVAGLIMAIGVTTDSFIV 475

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
             ER+R+E R+ + +  +++ G+ RA  TI  S+   L+A VVL+    G V+GFA T+G
Sbjct: 476 YFERVRDEVREGRPLRAAVEEGWDRAKRTIVVSDAVNLVAAVVLYLLAVGGVQGFAFTLG 535

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKM 520
           ++ +I +         MM  +IR +  
Sbjct: 536 VTTVIDLAVIFLFTHPMMELLIRTRFF 562



 Score =  105 bits (260), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 71/183 (38%), Gaps = 6/183 (3%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA---ITTLILDI 704
              +++ + +   +  + + KG+   +I    +++Y+  +++    + A   I   ++  
Sbjct: 381 NFEVESEQQISATLGSDHLEKGLWAAVIGFALVILYLIWQYRGLAVISAGSLIIATVITY 440

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
                   L G   +L  VA ++  IG + +  +V ++R+R  ++        R  +++ 
Sbjct: 441 QVIALLSWLMGYRLSLAGVAGLIMAIGVTTDSFIVYFERVRDEVRE---GRPLRAAVEEG 497

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +      V +     ++ + + +     +  FA  +    V+  +       P++  + 
Sbjct: 498 WDRAKRTIVVSDAVNLVAAVVLYLLAVGGVQGFAFTLGVTTVIDLAVIFLFTHPMMELLI 557

Query: 825 DWR 827
             R
Sbjct: 558 RTR 560


>gi|254883854|ref|ZP_05256564.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294776524|ref|ZP_06741998.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides vulgatus PC510]
 gi|319641472|ref|ZP_07996163.1| hypothetical protein HMPREF9011_01760 [Bacteroides sp. 3_1_40A]
 gi|254836647|gb|EET16956.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|294449653|gb|EFG18179.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides vulgatus PC510]
 gi|317386905|gb|EFV67793.1| hypothetical protein HMPREF9011_01760 [Bacteroides sp. 3_1_40A]
          Length = 1033

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 68/648 (10%), Positives = 173/648 (26%), Gaps = 44/648 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPIDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQELNGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMESNSSNSGGFSATVTFDISADPDLAAVEIQNRIKLAESRLPAEVIQNGISVEKQAASQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++             I  S       +D I       +          +     P +L  
Sbjct: 138 LLTLCLTSTDPKFDEIYLSNFATLNVLDLIRRIPGVGRVSNIGSRYYAMQIWVQPDKLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T A +       N      + G + ++  D     +  +  +S              
Sbjct: 198 FGLTVADLQNALKDQNRESAAGVLGQQPVQGLD-VTIPITTQGRLS-------------T 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 I            +                +    
Sbjct: 244 VSQFEEIVVRANADGSIIRLRDVARISLEAQSYNTESAINKENAAVLAIYMLPGANAMEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            ++       +           +          S      T      LV+IV+++ +   
Sbjct: 304 AKSVKEAMEEISKNFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVIIVVYLSLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  ++   ++ +++I T   + + G +L + ++ G+VL IG+ VD  I+V E +     +
Sbjct: 364 RATVIPLVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMEE 423

Query: 445 NQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
            + S + +           I  +++      V + F G   G   R F +T+ +S+L+S 
Sbjct: 424 EKLSPYQATKKAMEGLTGAIIATSLVLAAVFVPVSFLGGITGQLYRQFTVTIVVSVLLST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR--------ARFWGVGI 552
             A+++   M   I++ +           R          +++          R      
Sbjct: 484 VVALTLSPVMCSLILKPEDPNKKKNIVFRRINEWLAIGNHKYVGLIKHIVKHPRRVLSTF 543

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            ++     +           I+ +G  ++ +       L   R   E      +     +
Sbjct: 544 GMVLIAILLIHRIIPTSFLPIEDQGYFKIELELPEGATLERTRIVTERAVEYLMKNPAVE 603

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
             ++                  + +   +  +   +  I         
Sbjct: 604 YVQSVAGSSPRVGTSQARSELTVILKPWEERDSQTIDNIMAQVKKDMS 651



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 102/297 (34%), Gaps = 13/297 (4%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            F   + +   + +        +   +        +    + +   R  D +++   L SL
Sbjct: 741  FSTMKAYTGSVYVNDFNMFNRIYRVYIQAEAPYREHKENINLFFVRGTDNAMI--PLTSL 798

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                 +      ++  +       G++       + ++                      
Sbjct: 799  GTTSYTTGPGSIKRFNMFNSSVILGEAADGYSSGQAMEIIEQIAREHLPENIGVEWSGLS 858

Query: 662  SRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTL-ILDITKTLGFFALFGIE 717
             +E    G  G++++ + M +++    +   W   +  + +L +  +   LG +   G+E
Sbjct: 859  FQEKQAGGQTGMVLALVFMFVFLFLAALYESWMVPVAVLLSLPVAALGAYLGVWG-CGLE 917

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             ++     ++ L+G +  + +++ +  ++ +      +        +        + TS+
Sbjct: 918  NDVYFQIGLVMLVGLAAKNAILIVEFAKEQV---DKGVDVVQAALHASQLRFRPILMTSL 974

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A  + +LPM +    G +   +    + FG++ A +  I +     + IY  +AK  
Sbjct: 975  AFILGMLPMVIASGPGSASRQAIGTGVFFGMIFAVTVGILLVPFFFVLIYKMKAKMK 1031



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 12/223 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               ++ V AN    +  +R                   K     L            V 
Sbjct: 245 SQFEEIVVRANADGSIIRLRDVARISLEAQSYNTESAINKENAAVLAIYMLPGANAMEVA 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWY 691
           + VK+ + EI        +  +   ++  +             A+++ I + +     W 
Sbjct: 305 KSVKEAMEEISKNFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVIIVVYLSLQSWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNM 748
             +  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV    +R+ +  
Sbjct: 365 ATVIPLVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMEE- 423

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
                 +S      K++    G  + TS+      +P++  GG
Sbjct: 424 ----EKLSPYQATKKAMEGLTGAIIATSLVLAAVFVPVSFLGG 462


>gi|296126613|ref|YP_003633865.1| acriflavin resistance protein [Brachyspira murdochii DSM 12563]
 gi|296018429|gb|ADG71666.1| acriflavin resistance protein [Brachyspira murdochii DSM 12563]
          Length = 1046

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/553 (13%), Positives = 164/553 (29%), Gaps = 43/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEV 60
           +    + +    +  +G++      L +  +D  P   +P   I    D  G        
Sbjct: 10  KRPVAVFMGIVAVVILGIVS-----LSRLPVDFLPDMELPFISIRTTYDNAG-------- 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   S +        +  +  +++ + F       +    +   + 
Sbjct: 57  --PEEVEKSVSKIIEGAVSSVNNIKEVSSTSEEEDSRVFIEFNWGSDLASATADIREAID 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  D +   +   +   I ++                   +  Q +  I      
Sbjct: 115 RIRKSLPDDAESPAVYKFSTDNIPVMEISFYGTDN---LSALYNLVDNQILTSIEQVGGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   +  Q+  + D +RL+        +     + N +  G        + +    
Sbjct: 172 AMAEIRGGLKTQIKVDVDMNRLQAYGLDINTIVNTLAIENQNISGGETYEGVYKYTLRTT 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              +   +I                      +   +             I +      D 
Sbjct: 232 GEFKTVDDIG-------------------NVVVALKDNNTPIRLRELATIYEGYDEDGDV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + ++  +     E        L           V   +      +  
Sbjct: 273 IKVNGTPAVNVSINKESGANTVAVSEGIKKRLDTL--NLPEGIKYEVLFNSADNVNNAIK 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T        +I+L + +   +  L+   SI +++I+T  L+   G TL + S++G+
Sbjct: 331 GVLDTAWQGGLFAVIILMLYLWNVRTVLIIAISIPMSIIVTFTLMYFFGTTLNIISLSGL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
           VLGIG+ VD++I+V E I          + S   G S     I  S +T +   +   F 
Sbjct: 391 VLGIGMMVDNSIVVLENIFFYRNNGYGKYSSAIDGTSTVALAISASTLTTIAVFLPFLFV 450

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R   IT+ +S++ S+  A++IV  +   ++  KK K +              
Sbjct: 451 EGQTGQMFRDLCITVTVSMIASLAVALTIVPMLGARLVTTKKSKFLSKFEDFFDKHFHSK 510

Query: 538 IAIQFMRARFWGV 550
           +   + +   + V
Sbjct: 511 VNFIYEKVLTYSV 523



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 82/217 (37%), Gaps = 7/217 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK-ISRELIRKGIVGV 673
             +  +      G      +++  V+  I E V L +  +    G      E   + I  +
Sbjct: 803  NDSRITSITASGYGRPMNQIMNDVQAAINEKVFLPSGFSIVYSGDYEDMNEAFGQLIQAL 862

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ + +   +  +F+ +         +      +L    + G   ++ +   V+ LIG 
Sbjct: 863  FLALVLVYAIMASQFESYIAPFVIALAIPFGFAGSLTLLLVTGQTLSVYSGIGVIVLIGI 922

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
             VN+ +V+ D M  N  ++   I+       +    L   + TS+   + +LPMA+    
Sbjct: 923  VVNNGIVLIDYM--NQLMHEKKINGDKAALIAGPRRLRPVLMTSLTTILGLLPMALSSGE 980

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G  +    ++ +  G+ V+   ++ I   +   I + 
Sbjct: 981  GNEMYQPLSLAVLGGLTVSTMFTLVIVPTVYAAIRNR 1017



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 80/259 (30%), Gaps = 6/259 (2%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + V          +R      +  D             V +            V 
Sbjct: 238 DDIGNVVVALKDNNTPIRLRELATIYEGYDEDGDVIKVNGTPAVNVSINKESGANTVAVS 297

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV--GVIISAIAMLIYIWIRFKWYFA 693
           E +KK++  +     I+   +     +     KG++         A++I +   +     
Sbjct: 298 EGIKKRLDTLNLPEGIKYEVLFNSADNVNNAIKGVLDTAWQGGLFAVIILMLYLWNVRTV 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    ++ + I  T      FG   N+ +++ ++  IG  V++ +VV + +         
Sbjct: 358 LIIAISIPMSIIVTFTLMYFFGTTLNIISLSGLVLGIGMMVDNSIVVLENIF--FYRNNG 415

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
              +   ID +    L  S  T +      LP     G     F   +   + V+  +S+
Sbjct: 416 YGKYSSAIDGTSTVALAISAST-LTTIAVFLPFLFVEGQTGQMFR-DLCITVTVSMIASL 473

Query: 814 FIAAPILLFIYDWRAKNAR 832
            +A  I+  +        +
Sbjct: 474 AVALTIVPMLGARLVTTKK 492


>gi|222106687|ref|YP_002547478.1| AcrB/AcrD/AcrF family protein [Agrobacterium vitis S4]
 gi|221737866|gb|ACM38762.1| AcrB/AcrD/AcrF family protein [Agrobacterium vitis S4]
          Length = 1051

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 75/575 (13%), Positives = 165/575 (28%), Gaps = 41/575 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++   G L      L +  + + P  +P               + +    
Sbjct: 9   RPRMAIVIAIVLTIAGGLA-----LTRISVSQLPDIVPP-------------QVQVTASY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEGIG-VFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L+      + S +               +    +T+SFA     +     V  
Sbjct: 51  PGASAEVLEQTVAQPIESKVIGVDKALYMKSTSGNDGSYSLTVSFALGSDADINTVNVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  D +   +  + +    +       D+     +  +       +D+I   
Sbjct: 111 RVQTALSSLPSDVQSLGVSVSKKSSSILQFIMLQSDKGKFDPLFMTNYATINVLDEISRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      +   +    D  RL  L    + ++      N        G R + D  
Sbjct: 171 PGVGSASLFSNMKYSMRIWFDVDRLSSLGLVPSDVTSAISAQNVQAPVGRIGARPVPDDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY V+ +  +                 +    +                 +       
Sbjct: 231 AFQYNVQTQGRL-------------ETPEEFGNIVLRANKDGSVLKVKDVARVELGAQND 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L +         V   +      
Sbjct: 278 DTVSRREGDPGVAMGIYMSPGANALNTAAAVSAKIAQLNSRMPEGMRANVMYDSTTFVQD 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +V+F+ +   +  ++   ++ ++VI T A+L  LG +    S+
Sbjct: 338 TIESVIHTLIEAFVLVAVVVFLFLGNVRATIIPIIAVPVSVIATFAVLLALGYSANTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E +     +    +   +      +    I    +  L   V
Sbjct: 398 LALVLAIGIVVDDAIVVVENVERVMEEEPELTPVAATKKAMGQVTGPIIAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G +    R F++T+ +++LIS   A+++  A+    +R+   K   +  +SR  
Sbjct: 458 PIGFISGISGELFRQFSVTISVAMLISAINALTLSPALCAVFLRHTGEKRGIMGWISRRI 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                     ++       +S+L        ++  
Sbjct: 518 DNTRDGYAWAVQKMVRMAVLSLLIIGVGGAGIYGM 552



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 85/239 (35%), Gaps = 6/239 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  ++                V +   P    +    +E  K+ + + +P        
Sbjct: 798  QSIAEVKTIVGPPVITRYNNYRAVTINGSPSPGTSSGDAMEAFKQVVAKTLPSGFALEWT 857

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +  +   + GI+  +    A L  + +   W   +  + ++I+ +       AL  
Sbjct: 858  GTAYQEQQASGQTGIILALALLFAYLFLVALYESWTIPVPVLLSVIVGVFGAFAGMALTH 917

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +  +L A   ++ LI  +  + +++ +  ++        +   D             + T
Sbjct: 918  MTMDLYAQIGLVVLIALAAKNGILIVEFAKE---KREAGMPIADAAVLGAKLRFRAVMMT 974

Query: 776  SMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            S+A  + ++P+    G+ +    + + P+  G++ A++  +F+   + +     R K  
Sbjct: 975  SIAFILGLVPLVWANGASMMARHNVSTPVFIGMLTASTLGLFVIPMLYVTFQTVREKLK 1033


>gi|119897075|ref|YP_932288.1| RND efflux transporter permease [Azoarcus sp. BH72]
 gi|119669488|emb|CAL93401.1| RND efflux transporter, permease protein [Azoarcus sp. BH72]
          Length = 1017

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/540 (13%), Positives = 150/540 (27%), Gaps = 48/540 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN     +L+ ++   GLL           +  FP                   + +   
Sbjct: 9   RNPIPAGMLFVLLSFAGLLS-----FAGMKVQNFPDIDLPT-------------VTVTAS 50

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   L+       +   + L+        ++     IT+ F   +  +   D V  
Sbjct: 51  LPGATPSQLENDVARKIENAIATLQGLKHIYTKVQDGSVVITVEFRLEKPVQEAVDDVRS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V + L  D +  ++         ++       ++   A   S  +      ++   
Sbjct: 111 AVARVKADLPGDLRDPIVNKVDLAGQPVLAFTIRSARMDDEA--LSWFVDDTVSRRLLAV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      +  +L    DP RL+ L  T A +S           G    +       
Sbjct: 169 RGVGAVTRVGGVTRELRVTLDPLRLQALGATAAAISHQLRQVQTESAGGRADLGGGEQPV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    E+                     D+       R        +I    A  
Sbjct: 229 RTLATVASAAEL--------------------ADLELALSDGRSIRLSQVASITDTFAEP 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L    +     +     S              LRA              V     
Sbjct: 269 RSAALLNGQPVVGFEVARSRGESEVEVGAAVQGALDELRAAHPD-IEITEAFNFVAPVQE 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                       A L ++V+++ +   +   V+  ++ L+VI     + LLG ++ + ++
Sbjct: 328 EYDGSLQLLYEGALLAVLVVWLFLRDWRATFVSAVALPLSVIPAFIGMYLLGFSVNVITL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +  
Sbjct: 388 LALSLVVGILVDDAIVEVENIVRHLRMGKTPYEAAMEAADEIGLAVIATTFTLIAVFLPT 447

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + F  T  L++  S+  A  +   M  +I++       +   L+ +   
Sbjct: 448 AFMSGVAGKFFKQFGWTAALAVFASLVVARVLTPMMAAYILKPVVGTHREPRWLAWYERW 507



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 10/159 (6%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +A+L+       W     +   L L +        L G   N+  + A+  ++G  V
Sbjct: 339 GALLAVLVVWLFLRDWRATFVSAVALPLSVIPAFIGMYLLGFSVNVITLLALSLVVGILV 398

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +V  + +   ++      +  +   ++ +E     + T+       LP A   G   
Sbjct: 399 DDAIVEVENI---VRHLRMGKTPYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGVAG 455

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                F    A  +     +S+ +A  +   +  +  K 
Sbjct: 456 KFFKQFGWTAALAV----FASLVVARVLTPMMAAYILKP 490



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 65/156 (41%), Gaps = 3/156 (1%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI 716
             ++  EL     + ++   + + I + + FK     +  +  L L +        +   
Sbjct: 835 DAEVMGELFASFGLAMLTGVLCIYIVLVLLFKDLLHPVTILMALPLSLGGAFVGLLIAQK 894

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            F++ ++  ++ L+G +  + +++ +     +      +S  + +  +  +     V T+
Sbjct: 895 SFSMPSLIGLIMLMGIATKNSILLVE--YAIVARRDHGMSRSEALLDACRKRARPIVMTT 952

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
           +A    ++P+A+  G+   SF  PMA  ++    +S
Sbjct: 953 IAMGAGMMPIAIGAGAADTSFRSPMAIAVIGGLITS 988


>gi|117919527|ref|YP_868719.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. ANA-3]
 gi|117611859|gb|ABK47313.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. ANA-3]
          Length = 1049

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 70/694 (10%), Positives = 184/694 (26%), Gaps = 49/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFFITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + A++       N        G +   ++D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGMSPAEIIAAVREQNQQAAAGSLGAQPSGNADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I                 +          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIIKVGQNGEVIRLKDVARVELGATSYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L           +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTVFVRGSIH 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + L+G +L   S+ G+
Sbjct: 340 AVVKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLMGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIASGLSPIAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVR---------------AMMIFIIRYKKMKS 522
               G   + FA+T+ +S  IS   ++++                 A+   + +      
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKGHDAPKDALTRLMDKLFGGWL 519

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                            +     RF G+   +   + ++  +       G       Q  
Sbjct: 520 FTPFNRLFNRASEGYGYLVRKVIRFGGIIGLVYLGMVALTGVQFVNTPTGYVPGQDKQYL 579

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D + +      ++       N  G  + +                  +     
Sbjct: 580 VAFAQLPDAASLERTDAVIKKMSDIALNHPGVAHSIAFPGLSINGFTNSPNSGVVFVALD 639

Query: 643 TEIVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
              +  S   +   +  +++++   I+   + + 
Sbjct: 640 DFELRKSPELSANAIAGQLNQQFAGIQDAFIAIF 673



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 75/239 (31%), Gaps = 11/239 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            N+      D            +         S      +E +  +   I           
Sbjct: 812  NVSQSAGPDRVMHYNGFTTAEINGGPAPGVSSGQAQAAIEKILAETLPIGMTYEWTELTY 871

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                        G++   +  + + + +  +++     L  I  + + +   L    ++G
Sbjct: 872  QQILAGN----TGLLVFPLVILLVFMVLAAQYESLSLPLAIILIIPMTLLSALSGVLIYG 927

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + N+     ++ L+G +  + +++ +  ++        +   + I ++    L   + T
Sbjct: 928  GDNNIFTQIGLIVLVGLATKNAILIVEFAKE---KQDHGMEVMESILEAARLRLRPILMT 984

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            S+A  + V+PM      G  +  +  + +  G++      + +       +     + A
Sbjct: 985  SIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIGVTLFGLILTPLFYYALAKRGRRKA 1043



 Score = 41.2 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 81/228 (35%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L++     I      G     +    +   +       E ++ +I     +
Sbjct: 273 ATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTV 332

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               +   V   +   ++   +V V+               W  ++  +  + + +  T 
Sbjct: 333 FVRGSIHAVVKTLLEAVLLVVLVVVLFLQT-----------WRASIIPLVAVPVSLVGTF 381

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  L G   N  ++  ++  IG  V+D +VV + + +N+    + +S      K++ E 
Sbjct: 382 AFMHLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIA---SGLSPIAATQKAMKEV 438

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 439 TGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|255525894|ref|ZP_05392821.1| acriflavin resistance protein [Clostridium carboxidivorans P7]
 gi|255510388|gb|EET86701.1| acriflavin resistance protein [Clostridium carboxidivorans P7]
          Length = 1025

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 62/670 (9%), Positives = 168/670 (25%), Gaps = 46/670 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++  ++  +G    L            P                    +    
Sbjct: 9   KRPAAMWMVVILLVALGAFGYLKMGANLLPSMNNPVIT--------------VSTIYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  S +        + ++    +T++F  S         V   ++ 
Sbjct: 55  GADDIKKDVIKPIEDAVSGISGVDTINSTAKEGYGTVTITFKSSANLNTAYSDVQKAVEN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +S+L  D  K  ++      I ++    N +        +S         ++       
Sbjct: 115 ASSELPEDANKPTILKMDTNAIPVLAVSLNGNVSYDQLYNESDI----LKQKLEKVPGVG 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     QL  + D + +     +T  +                             
Sbjct: 171 SVSLMGADKKQLMIKLDKTAMEYYGISTNTVMGKLKS--------------------VNL 210

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                     +     ++                 I           
Sbjct: 211 NVPAGEIKQDKQDQAVRVIGQFHSIDDAKNMLVPTANGGSVRLGEIAQIKLEAPDATAQI 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +      +       ++          +          S   
Sbjct: 271 RFNGNKTMAVVVGKQSDANVVEVANSVKKQLESIKKSIPSDIKIDIAFDTTTFITSSLKQ 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +           +VL++     +  LV   +I  ++I T  ++     TL + S+ G+ 
Sbjct: 331 VQHNLIEGIITTAVVLYLFFRSFRSSLVVLVAIPTSLIATFFMMYKFNFTLNMLSLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSL---DMGFSRAYSTIFDSNITALIATVVLF 478
           L +G  VD +I+V E I+      +    +          A   I   +I       ++ 
Sbjct: 391 LVVGTLVDDSIVVIESIQRHLGLGKDPIRAAIDGRDEVGMAAVAISLCDIVVFAPISLMS 450

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   R F +T+ ++ + S+  + ++   +   I        +  K    + +   + 
Sbjct: 451 GMIGQLFREFGLTIVVATIFSLLVSFTVTPMLSSRILKRENKEKEIKKDGFFSKVLEKYK 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                +++  +     V + I+ S+  I +            +G   + +       L  
Sbjct: 511 STLIWSLEHRKKVLSAVIVCIVLSVALIPMGILKSEFIPTADQGSFTIDLALTPGSTLKQ 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
               +  ++    + +        +        D      ++ +V K   +         
Sbjct: 571 TDEKITQVEKYLKNMKEVKSYFTMVGSNGQGTSDKATGEIMVNLVPKNERKKSQTKLAAQ 630

Query: 654 TEIVGPKISR 663
               G  ++ 
Sbjct: 631 VRDFGKTMTG 640



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 86/267 (32%), Gaps = 13/267 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +    G  + +     + L    +  +    G+ +     G+++    ++       
Sbjct: 240 NMLVPTANGGSVRLGEIAQIKLEAPDATAQIRFNGNKTMAVVVGKQSDANVVEVANSVKK 299

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
               + + +   I   +   T         ++   LI   I        A+++Y++ R  
Sbjct: 300 QLESIKKSIPSDIKIDIAFDTTTFITSSLKQVQHNLIEGIIT------TAVVLYLFFR-S 352

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +  +L  +  +   +  T      F    N+ ++  +  ++G  V+D +VV + +    +
Sbjct: 353 FRSSLVVLVAIPTSLIATFFMMYKFNFTLNMLSLMGLSLVVGTLVDDSIVVIESI---QR 409

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                           +E    +V  S+   +   P+++     G +   F + +    +
Sbjct: 410 HLGLGKDPIRAAIDGRDEVGMAAVAISLCDIVVFAPISLMSGMIGQLFREFGLTIVVATI 469

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +   S  +   +   I     K   I
Sbjct: 470 FSLLVSFTVTPMLSSRILKRENKEKEI 496



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 78/233 (33%), Gaps = 24/233 (10%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E    V              V + +K K+  +        +     K   +      + +
Sbjct: 793  EDKQDVVTIGANLQGRVLGEVTKDIKAKLKPLSIPEGYSISYGGTQKNMADSFSSLGLAL 852

Query: 674  IISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              S   + +I + +   +      + +L L I    G  AL G   NL ++  ++ L G 
Sbjct: 853  GASLCLVYMILVVLYESFLTPAIRMVSLPLAIIGAFGLLALTGQTLNLMSMIGLIMLEGL 912

Query: 733  S-------VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            S       ++              L    ++ +D + +S    L   + TS    +S+LP
Sbjct: 913  SSKNGTLLIDYT----------NTLMKKGMNLKDALIESGVTRLRPIIMTSSTMIVSMLP 962

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA---KNAR 832
            +A+    G  +  S AI +  G+V +   S  +   +   + D      K  +
Sbjct: 963  VALSMGEGSEMKQSMAIVIIGGMVASTILSPIVIPVVYTLMDDLTKVVFKKKK 1015


>gi|212691877|ref|ZP_03300005.1| hypothetical protein BACDOR_01372 [Bacteroides dorei DSM 17855]
 gi|237724771|ref|ZP_04555252.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265756232|ref|ZP_06090561.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|212665549|gb|EEB26121.1| hypothetical protein BACDOR_01372 [Bacteroides dorei DSM 17855]
 gi|229436966|gb|EEO47043.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|263233823|gb|EEZ19432.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1033

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/633 (10%), Positives = 171/633 (27%), Gaps = 44/633 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPIDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQELNGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMESNSSNSGGFSATVTFDISADPDLAAVEIQNRIKLAESRLPAEVIQNGISVEKQAASQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++             I  S       +D I       +          +     P +L  
Sbjct: 138 LLTLCLTSTDPKFDEIYLSNFATLNVLDLIRRIPGVGRVSNIGSRYYAMQIWVQPDKLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T A +       N      + G + ++  D     +  +  +S              
Sbjct: 198 FGLTVADLQNALKDQNRESAAGVLGQQPVQGLD-VTIPITTQGRLS-------------T 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 I            +                +    
Sbjct: 244 VSQFEEIVVRANADGSIIRLRDVARISLEAQSYNTESAINKENAAVLAIYMLPGANAMEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            ++       +           +          S      T      LV+IV+++ +   
Sbjct: 304 AKSVKEAMEEISKNFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVIIVVYLSLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  ++   ++ +++I T   + + G +L + ++ G+VL IG+ VD  I+V E +     +
Sbjct: 364 RATVIPLVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMEE 423

Query: 445 NQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
            + S + +           I  +++      V + F G   G   R F +T+ +S+L+S 
Sbjct: 424 EKLSPYQATKKAMEGLTGAIIATSLVLAAVFVPVSFLGGITGQLYRQFTVTIVVSVLLST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR--------ARFWGVGI 552
             A+++   M   I++ +           R          +++          R      
Sbjct: 484 VVALTLSPVMCSLILKPEDPNKKKNIIFRRINKWLAIGNHKYVGLIKHIVKHPRRVLSTF 543

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            ++     +           I+ +G  ++ +       L   R   E      +     +
Sbjct: 544 GMVLIAILLIHRIIPTSFLPIEDQGYFKIELELPEGATLERTRIVTERAVEYLMENPAVE 603

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             ++                  + +   +  + 
Sbjct: 604 YVQSVAGSSPRVGTSQARSELTIILKPWEERDS 636



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 102/297 (34%), Gaps = 13/297 (4%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            F   + +   + +        +   +        +    + +   R  D +++   L SL
Sbjct: 741  FSTMKAYTGSVYVNDFNMFNRIYRVYIQAEAPYREHKENINLFFVRGTDNAMI--PLTSL 798

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                 +      ++  +       G++       + ++                      
Sbjct: 799  GTTSYTTGPGSIKRFNMFNSSVIRGEAADGYSSGQAMEIIEQIAREHLPENIGVEWSGLS 858

Query: 662  SRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTL-ILDITKTLGFFALFGIE 717
             +E    G  G++++ + M +++    +   W   +  + +L +  +   LG +   G+E
Sbjct: 859  FQEKQAGGQTGMVLALVFMFVFLFLAALYESWMVPVAVLLSLPVAALGAYLGVWG-CGLE 917

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             ++     ++ L+G +  + +++ +  ++ +      I        +        + TS+
Sbjct: 918  NDVYFQIGLVMLVGLAAKNAILIVEFAKEQV---DRGIDVVQAALHASQLRFRPILMTSL 974

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A  + +LPM +    G +   +    + FG++ A +  I +     + IY  +AK  
Sbjct: 975  AFILGMLPMVIASGPGSASRQAIGTGVFFGMIFAVTVGILLVPFFFVLIYKMKAKMK 1031



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 12/223 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               ++ V AN    +  +R                   K     L            V 
Sbjct: 245 SQFEEIVVRANADGSIIRLRDVARISLEAQSYNTESAINKENAAVLAIYMLPGANAMEVA 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWY 691
           + VK+ + EI        +  +   ++  +             A+++ I + +     W 
Sbjct: 305 KSVKEAMEEISKNFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVIIVVYLSLQSWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNM 748
             +  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV    +R+ +  
Sbjct: 365 ATVIPLVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMEE- 423

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
                 +S      K++    G  + TS+      +P++  GG
Sbjct: 424 ----EKLSPYQATKKAMEGLTGAIIATSLVLAAVFVPVSFLGG 462


>gi|145298288|ref|YP_001141129.1| multidrug resistance protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851060|gb|ABO89381.1| multidrug resistance protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 1039

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/652 (11%), Positives = 184/652 (28%), Gaps = 40/652 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L +++   GL+      + +    + PS                   + E  
Sbjct: 9   RRPLVAVVLSALLTVFGLVAFSKLTVREMPDVQTPSVSITT--------------MYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +          R+ ++ IT+ F            V   L  
Sbjct: 55  APAVMESQVTKPIEDQLSGISGIKNINSVTRKGRSVITVEFKLGWNMVEGTSDVRDALSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D  + ++          V    +  Q+   A+  +    R  +D + + +   
Sbjct: 115 ARPRLPDDVDEPMVTKDNGNGDVAVWLNFSSTQMDRTAM--TDYANRVLVDPLSLVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S  +   +     P+ +     T A +       N    G                
Sbjct: 173 EVALSGDLTQVMYVRLRPADMAARGITVADVQDALKRENIELPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +  + + +    A                    +  +     ++           
Sbjct: 219 -----IRNNSMTMAVQIARLYHTAADFQALQVRSADNGQSIYLADIADVEVGAKNEDSAY 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     +        ++          V+  +      +   
Sbjct: 274 QRNGRESLGIGIVAQSTANPLAVAQGIEQKITEMQRFLPEGAKLEVDYDSTIFIKQAIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI A LV+ VL++ +  G+  L+   ++ +++I        LG ++ L ++  ++
Sbjct: 334 VYETLAISAELVVAVLYLFLGQGRTTLIPAITVPVSLISAFIGAWYLGFSINLITLLALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I    ++ +    +   G       +  +    ++  V + F  
Sbjct: 394 LAIGLVVDDAIVVVENIHHHLQRGEPPLMAAWHGTREVGFAVVATTAVLVMVFVPIAFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN--PLSRFFLIPD 536
           G        FAI + L++L S   A+++  AM  +++R     ++          ++   
Sbjct: 454 GMVGRLFTEFAILLSLAVLFSSLVALTLTPAMGSWLMRSVDKPNVLTAALDRGLGWVEKH 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R       +L             L   +       +  +  +  + + +  
Sbjct: 514 YRRLLGWVLRRSAWTPLVLLLCLGGIGALFGQLPTSLTPTEDRGVLYVFVKGAEGTSIER 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
              ++Q  + +     G+          P       +    + +        
Sbjct: 574 MKRNMQQVEAAIMPLLGKGVVQAMSFSTPAFGRGGDQTGMAIIQLTDWTERD 625



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/113 (15%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
            E ++ +   ++ LIG    + +++ + +    +L     +F + I       L   + TS
Sbjct: 901  ELSIYSQIGMIMLIGMVTKNGILIVEFIN---QLRQRGEAFDEAIIAGSVRRLRPILMTS 957

Query: 777  MAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + A I  +P+ +  G       +    + FG+ +A   ++ +   I   +   
Sbjct: 958  LTAIIGAVPLMLSMGAGYESRMAVGTVVFFGLSLATLVTLLMVPAIYHLLAKR 1010



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 85/249 (34%), Gaps = 7/249 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + + L+ +       +  D ++Q    E   +  +     + +A  + +E    ++   +
Sbjct: 252 QSIYLADIADVEVGAKNEDSAYQRNGRESLGIGIVAQSTANPLAVAQGIEQKITEMQRFL 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISA-IAMLIYIWIRFKWYFALGAITTLILDIT 705
           P       +       ++ I +    + ISA + + +      +    L    T+ + + 
Sbjct: 312 PEGAKLEVDYDSTIFIKQAIDEVYETLAISAELVVAVLYLFLGQGRTTLIPAITVPVSLI 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G   NL  + A++  IG  V+D +VV + +                     
Sbjct: 372 SAFIGAWYLGFSINLITLLALILAIGLVVDDAIVVVENIH---HHLQRGEPPLMAAWHGT 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     V T+    +  +P+A   G V      FAI ++  ++ ++  ++ +   +  +
Sbjct: 429 REVGFAVVATTAVLVMVFVPIAFMDGMVGRLFTEFAILLSLAVLFSSLVALTLTPAMGSW 488

Query: 823 IYDWRAKNA 831
           +     K  
Sbjct: 489 LMRSVDKPN 497


>gi|260223318|emb|CBA33761.1| Nodulation protein nolG [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 1059

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 58/524 (11%), Positives = 148/524 (28%), Gaps = 41/524 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N  +  ++   +  +GL       L +  +D+FP+      +                
Sbjct: 8   LQNPVFATMVMLALVVLGLFS-----LQRLQVDQFPNIDFPVVV---------VITDYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + +           + Q+ + + F         AD V   + 
Sbjct: 54  ASPEIVESEVSKKVEEGVNSIAGINALTSRNYEGQSVVVIEFGLHIDGRKAADDVREKVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKE----ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            V   L  + K+  ++             VL   +       A+E +    +    ++  
Sbjct: 114 AVKPLLRTEVKEPRVLRFDPSSRAVWSVAVLPDASQGGKALTAVELTNWAEQNFKKRLEN 173

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                          ++    +P  L     T  ++       N                
Sbjct: 174 VRGVGSVTLVGGTKREINLYLNPQALESFGITPDQVVTAVTNENQDLPLG---------- 223

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                        S             +  +    I                 +      
Sbjct: 224 ----------TIHSNEQERVIQVQARMQRPEDFGSIIVARKNGTPVRLDQVARVADGAQE 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +                 +    ++      A ++    P               
Sbjct: 274 AETLALYNGQRTLLMNVQKSQDENTIVVVDGLVKALAEMQKQLPPGVRLEQITDGSRQIR 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S +  + T    A L ++++F+ +   +  ++   ++ + +I T   ++  G T+ + +
Sbjct: 334 VSVNNVRQTLIEGAVLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMNAFGFTINMIT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  + L +GL +D  I+V E I    +  ++ + +   G       +  + ++ +   + 
Sbjct: 394 LMALSLCVGLLIDDAIVVRENIVRHVQMGKNAYNASLDGTQEIGLAVLATTLSIVAVFLP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           + F G   G     F IT+  ++LISMF + ++   +       
Sbjct: 454 IGFMGGIIGKFFHEFGITIVAAVLISMFVSFTLDPMLSSIWHDP 497



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 89/267 (33%), Gaps = 9/267 (3%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +         +  G I +      PV L  V    +  Q  +            +   + 
Sbjct: 234 IQVQARMQRPEDFGSIIVARKNGTPVRLDQVARVADGAQEAETLALYNGQRTLLMNVQKS 293

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLI 682
           Q  +++     L     ++ + +P          G +  R  +      +I  + + +LI
Sbjct: 294 QDENTIVVVDGLVKALAEMQKQLPPGVRLEQITDGSRQIRVSVNNVRQTLIEGAVLTVLI 353

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                  W   +    TL + +  T  F   FG   N+  + A+   +G  ++D +VV  
Sbjct: 354 VFLFLNSWRSTVITGLTLPIALIGTFLFMNAFGFTINMITLMALSLCVGLLIDDAIVV-- 411

Query: 743 RMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFA 798
             R+N+  +     +  +       E     + T+++     LP+   GG +      F 
Sbjct: 412 --RENIVRHVQMGKNAYNASLDGTQEIGLAVLATTLSIVAVFLPIGFMGGIIGKFFHEFG 469

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYD 825
           I +   ++++   S  +   +    +D
Sbjct: 470 ITIVAAVLISMFVSFTLDPMLSSIWHD 496



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 78/240 (32%), Gaps = 11/240 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
               V +N      +VR N  +           +                 +   V   +K
Sbjct: 786  PFTVGSNADGSPRIVRLNQVADVRESTGPNQINRRDLTREVSISGNVSGRSAGEVSADIK 845

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
              +  I              K   E     I  ++++ + + + +  +F  +   L  +T
Sbjct: 846  TAMDSISLPPGYSYKFSGSTKDMAEAFGYAISALVLAIVFIYMILASQFKSFLQPLALMT 905

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRK----NMKLY 751
            +L L +   +    +F    ++ ++  V+ L+G    + +++ D   R R+         
Sbjct: 906  SLPLTLIGVVLALMMFNSTLSMFSIIGVVMLMGLVTKNAILLVDFAIRAREGGTDEQGHP 965

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +   + +  +    L   + T++A    ++P+A     G  +       +  G++ +
Sbjct: 966  VPGLPRSEALLLAAKVRLRPILMTTLAMIFGMVPLAFALSEGAEMRAPMGQAVIGGVITS 1025


>gi|209524393|ref|ZP_03272942.1| protein-export membrane protein SecD [Arthrospira maxima CS-328]
 gi|209495184|gb|EDZ95490.1| protein-export membrane protein SecD [Arthrospira maxima CS-328]
          Length = 463

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 125/490 (25%), Positives = 209/490 (42%), Gaps = 64/490 (13%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEV----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
            + +  I LGLDLRGGS L +++    D        L+     + + +   G+    ++ 
Sbjct: 21  ILVRVPIRLGLDLRGGSQLTIQLQTSDDVPRIDERVLEGVQSVIENRVNGLGVSEAVVQT 80

Query: 94  -IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
              ++I +        E     +    Q    +     +  L              +  I
Sbjct: 81  VGDDQILVQLPGVSDPEQAERVLGGTAQLDFREQRPGTEGELFAEIQVNRALDADLRQAI 140

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
                  +EQ ++ + +    I                            ++ +    ++
Sbjct: 141 ATGDDDRLEQLLQQLNESNQAIASF------------------------YKEPIIRGQQL 176

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
                 P     G+   +RF  +   N   +   +  +G  +                  
Sbjct: 177 QDAFPQPTQGGNGWEIVLRFNSEGGRNFAELTKNLAGTGRTIGIFL-------------- 222

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                                   +L    ++    +  I  G A I+GNF+   A  LA
Sbjct: 223 ---------------------DDSLLSSPTVSVEFADTGITGGSAVITGNFSAAEANDLA 261

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
             LR G+LP+ + IVE R VGA LG DSI +   A   GL+L+++FM+  Y   G +AD 
Sbjct: 262 VQLRGGALPVPVEIVENRTVGATLGRDSIQRSIYAGSGGLILVLIFMVAYYRLPGAIADV 321

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++ +  + TLA+ +LLG TLTLP IAG +L IG+AVD+N+L+ ER REE R  ++++ S+
Sbjct: 322 ALVVYALFTLAIFALLGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAGKTLYRSV 381

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           + GF RA+ +I D N+T  IA V LF+ G G V+GFA+T+GL + +SMFTA++  R +M 
Sbjct: 382 ESGFYRAFGSILDGNVTTGIACVALFWLGTGLVKGFALTLGLGVAVSMFTAVTFSRTLMF 441

Query: 513 FIIRYKKMKS 522
            +I   + + 
Sbjct: 442 TVISLPEFRK 451



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 91/226 (40%), Gaps = 4/226 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   +   +      +           G+  A       V+ +   +     I     V
Sbjct: 222 LDDSLLSSPTVSVEFADTGITGGSAVITGNFSAAEANDLAVQLRGGALPVPVEIVENRTV 281

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ I++ I       I +LI++   ++   A+ A   L++    TL  FAL G+ 
Sbjct: 282 GATLGRDSIQRSIYAGSGGLILVLIFMVAYYRLPGAI-ADVALVVYALFTLAIFALLGVT 340

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      +    ++       G  +  ++
Sbjct: 341 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKTLYRSVESGFYRAFGSILDGNV 397

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              I+ + +   G  ++  FA+ +  G+ V+  +++  +  ++  +
Sbjct: 398 TTGIACVALFWLGTGLVKGFALTLGLGVAVSMFTAVTFSRTLMFTV 443


>gi|149279869|ref|ZP_01885996.1| multidrug resistance protein, AcrB/AcrD family [Pedobacter sp.
           BAL39]
 gi|149229459|gb|EDM34851.1| multidrug resistance protein, AcrB/AcrD family [Pedobacter sp.
           BAL39]
          Length = 1064

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 66/546 (12%), Positives = 152/546 (27%), Gaps = 45/546 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  ++   G+L      L +  L +FP   P               + +   
Sbjct: 7   QRPVLATVISILLVIFGVL-----GLSKLPLQQFPDIAPPA-------------VQVTAL 48

Query: 62  EDDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                   +       L   +   E +   S     +    IT+ F      +  A  V 
Sbjct: 49  YPGANAETVLRSVAPSLEESINGVENMSYMSSTASNDGSLVITVYFKLGTDPDQAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIG 175
             +    S+L  +  +  + T  ++   I++     +       I  +       I +I 
Sbjct: 109 NRVSQATSQLPSEVVQAGITTAKQQNSLIMVLDLYTENSSDYDQIFMANYAQINLIPEIK 168

Query: 176 ISESTIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                             +    +P+++        ++       N       FG     
Sbjct: 169 RIPGVGSASIFGGSKDYSMRVWLNPTQMATYKLMPNEVMAAIQSKNLEAAPGKFGE---S 225

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            ++  +Y+++ K ++              +       +                 +    
Sbjct: 226 SNNAFEYVIKYKGKL-------------NQPKDYENMVIRSNADGSVLRLKDVARVEFGA 272

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   +             A  + N    +                   V      +
Sbjct: 273 YTYGSLTRINGKPGVDIGILQLAGSNANEIQISIDNFMKKASKDFPKGVKYHVLYSTKVS 332

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S    K T      LV IV+F+ +   +  L+   ++ + ++ T   + + G ++ L
Sbjct: 333 LDQSIDQVKHTLIEAFILVFIVVFVFLQDFRSTLIPAIAVPVAIVGTFFFMQVFGFSINL 392

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++  +VL IG+ VD  I+V E +  +          +           I    +     
Sbjct: 393 LTLFALVLAIGIVVDDAIVVVEAVHAKMEYENLPPKEATASAMQEITGAIISITLVMSAV 452

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + + F  G      R FA T+ ++I+IS   A+++  A+    ++    +S        
Sbjct: 453 FLPVGFMEGSTGVFYRQFAFTLAIAIVISAVNALTLSPALCALFLKNVHHESHGKPVQRS 512

Query: 531 FFLIPD 536
           F     
Sbjct: 513 FSQRFF 518



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 62/173 (35%), Gaps = 9/173 (5%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
             E+   G   +I     + +Y  +      +   L  + ++   I          GIE N
Sbjct: 869  EEISSGGQSAIIFGLCLLFVYFLLSAQYESYILPLAVVLSIPTGIFGVFAAIGFAGIENN 928

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            +    A++ LIG    + +++ +     ++      S      ++    L   + TS+A 
Sbjct: 929  IYVQVALVMLIGLLAKNAILIVE---YAVQRRKNGKSLTSAALEAAKLRLRPIIMTSLAF 985

Query: 780  FISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             + ++PM    G       S +I  A G+V      +FI   + +     + K
Sbjct: 986  IVGLVPMMSASGPSALGNHSISIGAAGGMVFGVVLGLFIIPVLFIIFQYLQEK 1038



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 81/199 (40%), Gaps = 8/199 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           +    ++   K   + V    + +T++   +   ++    I   I+  I + +++     
Sbjct: 305 SIDNFMKKASKDFPKGVKYHVLYSTKVSLDQSIDQVKHTLIEAFILVFIVVFVFLQ---D 361

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + I  T  F  +FG   NL  + A++  IG  V+D +VV + +    K
Sbjct: 362 FRSTLIPAIAVPVAIVGTFFFMQVFGFSINLLTLFALVLAIGIVVDDAIVVVEAVH--AK 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +   ++  ++    ++ E  G  +  ++      LP+    GS       FA  +A  IV
Sbjct: 420 MEYENLPPKEATASAMQEITGAIISITLVMSAVFLPVGFMEGSTGVFYRQFAFTLAIAIV 479

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +++ ++  +      
Sbjct: 480 ISAVNALTLSPALCALFLK 498


>gi|104781763|ref|YP_608261.1| multidrug resistance efflux pump [Pseudomonas entomophila L48]
 gi|95110750|emb|CAK15463.1| multidrug resistance efflux pump [Pseudomonas entomophila L48]
          Length = 1036

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/587 (10%), Positives = 156/587 (26%), Gaps = 45/587 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   I  +G +           +   P       +             L   
Sbjct: 9   RRPVATMLLSLAIMLLGGVS-----FGLLPVSPLPQMDFPVIV---------VSANLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S  Q   ++ + F   R  +  A +V   +  
Sbjct: 55  SPEVMASTVATPLERKLGAIAGVTTLTSSSNQGSTRVIIGFDLGRDIDGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 TRNLLPSGMRSMPTYKKINPSQAPIMV-LSLTSDVLSKGKLYDLADTILSQSLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q   +   +       N  +       +          
Sbjct: 174 EVQIGGSSLPAVRIELEPQLLNQYSLSLDDVRTAVANANQRRPMGFVEDQERNWQVRAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +   +             +   +    +  
Sbjct: 234 QLEKAED--------------------YKPVVIRQANGAILRLSDVAKVTDGVENRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +   +   T+         L++         V          +   
Sbjct: 274 FFNDESAVLLVINRQTNANIIETVGQIKAELPALQSLLPASVKLNVAMDRSPVIKATLKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+++ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEHTLLIAVVLVILVVYLFLGNLRASLIPSLAVPVSLVGTFAVMYLCGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I       +    +   G      T+   N++ +   V + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIENGEKPMRAAYKGAQEVGFTLLSMNVSLVAVFVSILFMG 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRF 531
           G      + F+IT+  +I++S+  ++++   +            + +  +  D       
Sbjct: 454 GIVRGLFKEFSITLAAAIIVSLVVSLTLTPMLCSRWLKVHGPQQQTRLQRWSDRVHQRMV 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                 +       R     +     +     +            G 
Sbjct: 514 AGYDRSLGWALRHKRLTLFSLLATIVLNVALYVVVPKTLMPQQDTGQ 560



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/139 (15%), Positives = 48/139 (34%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
              +L     + + +  T     L G   N  ++ A++   G  V+D +VV + +    +
Sbjct: 356 LRASLIPSLAVPVSLVGTFAVMYLCGFSLNNLSLMALILATGLVVDDAIVVLENI---SR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV 806
                        K   E     +  +++     + +   GG    +   F+I +A  I+
Sbjct: 413 HIENGEKPMRAAYKGAQEVGFTLLSMNVSLVAVFVSILFMGGIVRGLFKEFSITLAAAII 472

Query: 807 VAASSSIFIAAPILLFIYD 825
           V+   S+ +   +      
Sbjct: 473 VSLVVSLTLTPMLCSRWLK 491



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 95/267 (35%), Gaps = 6/267 (2%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            N    +       V         V  S     +    + +     +     + +   +  
Sbjct: 758  NPKFAWDPSTLEQVQVITADGARVPLSTFARYENSLANDRVSHEGQFASESINFDVAEGY 817

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +  + L  +++ + ++    ++            +  +   + ++ + + + + + I ++
Sbjct: 818  SPDQALAALERAVAKLGLPESVIAKLGGTADAFSKTTQGQPLMILGALVLVYLVLGILYE 877

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  ++TL       L    L G +F+L ++  +  LIG    + +++ D      
Sbjct: 878  SYIHPLTILSTLPSAGVGALLALYLTGGQFSLISLLGLFLLIGVVKKNAILMID--LALQ 935

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S    I ++    L   + T++AA +  LP+ +    G  +     + +  G+
Sbjct: 936  LERNEGLSPEASIRRACLLRLRPILMTTLAAMLGALPLLLSSAEGAEMRQPLGLTIIGGL 995

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            V +   +++    + L++   R +  R
Sbjct: 996  VFSQVLTLYTTPVVYLYLDRLRHRFNR 1022


>gi|85717260|ref|ZP_01048215.1| putative multidrug-efflux transport protein [Nitrobacter sp.
           Nb-311A]
 gi|85695901|gb|EAQ33804.1| putative multidrug-efflux transport protein [Nitrobacter sp.
           Nb-311A]
          Length = 1047

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 80/679 (11%), Positives = 191/679 (28%), Gaps = 37/679 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GLL      L +  + + P  +P                V     
Sbjct: 9   RPRMAIVIAIVISLAGLLA-----LSRIPVAQLPDIVPPEVQ---------VSAVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +     + K      S     +  + +SFA     +     V   +Q 
Sbjct: 55  ASVLEATVAQPIESRVVGVDKMIYMKSSSGADGSYNLDVSFALGTDPDINTVNVNNRVQT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +   L         +       +      +  +   I   +D++       
Sbjct: 115 AMASLPPEVQLQGLTVQKRTSSVLQFITLYSEGGKLDPLTITNYAIINVLDELSRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L   R    +    D +RL  L    + +       +        G R + +    Q 
Sbjct: 175 QALLFGRENYSMRIWFDTARLTSLGLGPSDVIRAVQAQSVQAPIGRLGARPIPEDQQFQL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  ++                +    +                 I           
Sbjct: 235 NLQTQGRLT-------------TPEQFGAIVIRANPDGSVLQVKDVARIELGAQNQDTFS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +T       LR              +      +   
Sbjct: 282 RLNGDPSVTIGIYLSPGANALTVSKTVNATLDKLRTRFPEGLQARAVHDSTVFVRDTIKA 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV IV+F+ +   +  ++   +I +++I + A+L +LG +    S+  +V
Sbjct: 342 VIQALIEAFVLVGIVVFLFLGNLRATIIPIIAIPVSLIGSFAVLLMLGYSANTVSLLALV 401

Query: 422 LGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L +G+ VD  I+V E +        + S   +     ++  + I    +  L   V + F
Sbjct: 402 LAVGIVVDDAIVVVENVERIMEEEPDLSPAEATKKAMAQVTAPIIGITLVLLSVFVPIAF 461

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R FA+T+  ++LIS   A+++  A+    +R+   + I          + D
Sbjct: 462 IAGISGELFRQFAVTISAAVLISAVNALTLSPALCTVFLRHSPRRGIMGRIGQGIDKVRD 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID----FKGGIQLGVLANRPVDLS 592
             A    +     V   +L +   + +     +          +G   + V       ++
Sbjct: 522 GYATVVRKTLRLSVISMVLIAAFGLGIFGLMRITPTGFLPEEDQGTFFINVQLPDGASVN 581

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
               +++ ++             + +         +     ++  +K          + Q
Sbjct: 582 RTSESVKQVESVLKGMPQVRDTISIIGYSLLDGYAASNNAFMIVKLKPFEERTKVADSAQ 641

Query: 653 NTEIVGPKISRELIRKGIV 671
                    S+ +    ++
Sbjct: 642 ALIAQLFDASQRIRTANVL 660



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 85/250 (34%), Gaps = 10/250 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V L  + S         I+  N                   A   + E+  K I    
Sbjct: 792  EMVPLQSIASARTVTGPQVITRYNNYRSVTINGSPAPGVASGTALDAMAEVSAKTIPPGY 851

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                            + +I  G + ++ +    L  + +   W   +  + ++++ +  
Sbjct: 852  AFEWTGTAYQEQAASGQTIIVLG-MALLFAF---LFLVALYESWIIPVPVLFSVVVGVLG 907

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +    +  +  +L A   ++ LI  +  + +++ +  ++        +S          
Sbjct: 908  AIAGVLIAHLTLDLYAQIGLVVLIALAAKNAILIVEFAKEQR---EQGLSLEQAAAVGAE 964

Query: 767  ETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + TS+A  + ++P+    G S I   + + P+  G++ A+S  +F+   + +F 
Sbjct: 965  MRFRAVLMTSIAFILGLVPLVWASGASEIARQAVSTPVFVGMIAASSIGLFLIPMLYVFW 1024

Query: 824  YDWRAKNARI 833
               R +  R+
Sbjct: 1025 ESIRERTNRL 1034



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/378 (10%), Positives = 119/378 (31%), Gaps = 18/378 (4%)

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF----IIRYKKMKSI 523
            ++++  + L+  GG           +  ++   + IS V   ++F            + 
Sbjct: 134 TSSVLQFITLYSEGGKLDPLTITNYAIINVLDELSRISGVGQALLFGRENYSMRIWFDTA 193

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
            +  L                    G   +          L           +    + +
Sbjct: 194 RLTSLGLGPSDVIRAVQAQSVQAPIGRLGARPIPEDQQFQLNLQTQGRLTTPEQFGAIVI 253

Query: 584 LAN---RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            AN     + +  V       Q  D   +        +        +++  ++ +     
Sbjct: 254 RANPDGSVLQVKDVARIELGAQNQDTFSRLNGDPSVTIGIYLSPGANALTVSKTVNATLD 313

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
           K+    P               R+ I+  I  +I + + + I +++        +  I  
Sbjct: 314 KLRTRFPEGLQARAVHDSTVFVRDTIKAVIQALIEAFVLVGIVVFLFLGNLRATIIPIIA 373

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSIS 756
           + + +  +     + G   N  ++ A++  +G  V+D +VV    +R+ +        +S
Sbjct: 374 IPVSLIGSFAVLLMLGYSANTVSLLALVLAVGIVVDDAIVVVENVERIMEE----EPDLS 429

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
             +   K++ +     +  ++      +P+A      G +   FA+ ++  ++++A +++
Sbjct: 430 PAEATKKAMAQVTAPIIGITLVLLSVFVPIAFIAGISGELFRQFAVTISAAVLISAVNAL 489

Query: 814 FIAAPILLFIYDWRAKNA 831
            ++  +         +  
Sbjct: 490 TLSPALCTVFLRHSPRRG 507


>gi|120598044|ref|YP_962618.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           sp. W3-18-1]
 gi|120558137|gb|ABM24064.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella sp. W3-18-1]
          Length = 1058

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 56/504 (11%), Positives = 135/504 (26%), Gaps = 29/504 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFLITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + A +       N        G +    +D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGLSPADIIAAVREQNQQAAAGSLGAQPSGSADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I      A          +          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIIKVGQNAEVIRLKDVARVELGATSYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L           +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S+ G+
Sbjct: 340 AVVKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIAAGLSPMAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 GGGAVRGFAITMGLSILISMFTAI 504
            G   + +        + +  +AI
Sbjct: 460 SGLTGQFYKQFALTITISTFISAI 483



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 77/238 (32%), Gaps = 11/238 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            N+      D            +         +      +E +  +   I           
Sbjct: 812  NVSQSAGPDRVMHYNGFTTAEINGGPAPGVSTGQAQAAIEKILAETLPIGMTYEWTELTY 871

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                        G++   +  + + + +  +++     L  I  + + +   L    ++G
Sbjct: 872  QQILAGN----TGLLVFPLVILLVFMVLAAQYESLSLPLAIILIIPMTLLSALSGVLIYG 927

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + N+     ++ L+G +  + +++ +  ++        ++  + I ++    L   + T
Sbjct: 928  GDNNIFTQIGLIVLVGLATKNAILIVEFAKE---KQDHGMAPMEAILEAARLRLRPILMT 984

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            S+A  + V+PM      G  +  +  + +  G++      + +       +    +KN
Sbjct: 985  SIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIGVTVFGLILTPLFYYALAKRGSKN 1042



 Score = 42.8 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 81/228 (35%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L++     I      G     +    +   +       E ++ +I     +
Sbjct: 273 ATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTV 332

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + E V   +   ++   +V V+               W  ++  +  + + +  T 
Sbjct: 333 FVRGSIEAVVKTLLEAVLLVVLVVVLFLQT-----------WRASIIPLVAVPVSLVGTF 381

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K++ E 
Sbjct: 382 AFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAA---GLSPMAATQKAMKEV 438

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 439 TGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|37519833|ref|NP_923210.1| AcrB/AcrD/AcrF family protein [Gloeobacter violaceus PCC 7421]
 gi|35210824|dbj|BAC88205.1| AcrB/AcrD/AcrF family protein [Gloeobacter violaceus PCC 7421]
          Length = 1028

 Score =  156 bits (392), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/616 (12%), Positives = 165/616 (26%), Gaps = 46/616 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-- 59
           RN    V+L+ M+   G+   L        +   P                   + +   
Sbjct: 11  RNPVPTVVLFLMLTVAGVAAFL-----NLSIAAEPDIDVPA-----------VSVTVTQL 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 +   +    ++    L        ++    +   + F      +   + V   +
Sbjct: 55  GAAPSELETQVTRKIEDAVVGLGNVKRLTSTVNDGSSVTRVEFFLGTNTDRAVNDVRDAV 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             + ++L       ++    E    I+       Q  +   E S  +       +     
Sbjct: 115 TKIRAQLPQSIDPPVVRRNDEAGGPILGYTVYSKQRTNA--EISWLVDNTITRAVLTVPG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +   S  +  ++  E +P+RL+ L  T  +++      N    G    V     +   
Sbjct: 173 VSRVYRSGGVTREVRIELNPNRLQALGVTADQLNGQIRALNIDLPGGRGEVGPGEQAIRT 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                    ++   +                         R     T   +         
Sbjct: 233 LGSAATVERLAATQILL--------------------SDGRYARLDTLGRVLDGTTEPRQ 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L                +     E      A L+                     S 
Sbjct: 273 IAYLDGKPGVAFEVVRSKGSNLVNVEEGVEKKVAELKKILPADIRIDPTWTVGDFVRESY 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   + A L ++V+++ +   +  L+A  ++ L+ I T A++  LG TL   ++  
Sbjct: 333 EASVDALLLGAALAVVVIWVFLRDWRSTLIAGLAMPLSAIPTFAVMKTLGFTLNSMTLLA 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L IG+ VD  I+  E I       +S F +           +  + +T +   V + F
Sbjct: 393 LALVIGILVDDAIVEIENIVRHIGMGKSPFQAALDAADEIGLAVVATTMTIVAVFVPVAF 452

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            G   G   R F IT+  ++L S+  A  +   +  ++++            +   L   
Sbjct: 453 MGGIQGQYYRQFGITVAAAVLFSLVVARMLTPLLAAYLMQ---PLPEAEGKGALARLYDR 509

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +               + F+              G        L V        +  R 
Sbjct: 510 FLGWAIDHRWVTLAVAGVFFAGSLTLFQTIPTSLIGAVDDNQSTLAVELPPGATFAQTRL 569

Query: 597 NLESLQIGDISFQNFD 612
            +E +    +  +   
Sbjct: 570 AVERVNAIVMGREEVS 585



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 82/248 (33%), Gaps = 7/248 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           Q+ +   R   L  +   L+                     ++ +  + V     +E   
Sbjct: 246 QILLSDGRYARLDTLGRVLDGTTEPRQIAYLDGKPGVAFEVVRSKGSNLVNVEEGVEKKV 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAIT 698
            ++ +I+P     +         RE     +  +++ A   ++ IW     W   L A  
Sbjct: 306 AELKKILPADIRIDPTWTVGDFVRESYEASVDALLLGAALAVVVIWVFLRDWRSTLIAGL 365

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L    T       G   N   + A+  +IG  V+D +V  + +   ++      S  
Sbjct: 366 AMPLSAIPTFAVMKTLGFTLNSMTLLALALVIGILVDDAIVEIENI---VRHIGMGKSPF 422

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                + +E     V T+M      +P+A  G   G     F I +A  ++ +   +  +
Sbjct: 423 QAALDAADEIGLAVVATTMTIVAVFVPVAFMGGIQGQYYRQFGITVAAAVLFSLVVARML 482

Query: 816 AAPILLFI 823
              +  ++
Sbjct: 483 TPLLAAYL 490



 Score = 46.6 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 61/153 (39%), Gaps = 7/153 (4%)

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +  + + +   + + F  +   L  + +L L +   +    LFG    L A+  ++ L+
Sbjct: 848 AIGAAVLLIYAVLVLLFGGFLHPLTIMVSLPLSLGGVVLGLLLFGKSLGLYALIGIIMLM 907

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
           G    + +++ +     +         R  + ++    +   + T++A    +LP+A+  
Sbjct: 908 GLVTKNAILLVE---YGLMAIEAGQPRRTALLQAGESRMRPILMTTIAMIAGMLPIALGL 964

Query: 789 -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             G  V    A+ +  G+V +   ++ +   + 
Sbjct: 965 GAGSEVRSPMAVAVVGGLVTSTLLTLIVVPVVF 997


>gi|330957399|gb|EGH57659.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 1035

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 74/594 (12%), Positives = 164/594 (27%), Gaps = 42/594 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVD 61
               ++L   I  +G++       P+  +   P A                 +   L   
Sbjct: 16  PVATLLLTFAIVLLGVIA-----FPRLPIAPLPEAEFPT-----------IQVTAQLPGA 59

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        S       +TL F   +  +  A +V   +  
Sbjct: 60  SPETMASSVATPLEVQFSAIPGMTQMTSSSALGSTNLTLQFTLDKSIDTAAQEVQAAINT 119

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + +L  D              S VL   ++   +    E S         Q+   E   
Sbjct: 120 ASGRLPADMPNLPTWRKVNPADSPVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVG 178

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   + +    +  +  P +L  L  T A +                             
Sbjct: 179 QVYITGQQRPAIRVQAAPEKLAALGLTLADIRLAV--------------------QQTSL 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +          ++  ++N      +    +                 +           
Sbjct: 219 NLAKGALYGRDSISTLSSNDQLFKPQDYAQLIVSYKDGAPVQLKDVARVVAGSENAYVKA 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L+          V          S   
Sbjct: 279 WSGDQQGVNIAIFRQPGANIVETVDRIQRELPRLQEMLPAAVDVSVLNDRTRTIRASLHE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+ V+ + +      L+    + +++I + A++ L G +L   ++  IV
Sbjct: 339 VEMTLLIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E I       + +  +   G      T+   + + + A + L F G
Sbjct: 399 VAVGFVVDDAIVVVENIHRHLEAGEGMREAAIKGSREIGFTVVSISFSLVAAFIPLLFMG 458

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T   +ILIS+  ++++   +    +R  K +           L     
Sbjct: 459 GVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMRAPKHQQHQKPGFGDRLLASYER 518

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            ++   A    +      ++    + +          +             D+S
Sbjct: 519 GLRKALAHQRLMLGIFGLTLVLAVMGYILIPKGFFPVQDTSFAQGTTEAAADIS 572



 Score = 84.7 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 250 IVSYKDGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVETVDRIQREL 309

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 310 PRLQEMLPAAVDVSVLNDRTRTIRASLHEVEMTLLIAVLLVVAVMALFLRQLSATLIVSA 369

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 370 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGEGMR 426

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 427 EAAIKGSREIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 486

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 487 APTLAALFMR 496



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 80/198 (40%), Gaps = 6/198 (3%)

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
            + +   EI   + I  +     +  +  +      ++ + +A+ I + + ++ +   L  
Sbjct: 828  LDQAKNEIGMPAAIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFVHPLTI 887

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            I+TL       L    + G +F++ A+  V+ LIG    + +++ D            ++
Sbjct: 888  ISTLPSAGIGALLLLWMMGQDFSIMALIGVVLLIGIVKKNGILLVD--FALQAQREQGLT 945

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
             ++ I ++        + T++AA +  LP+ +    G  +     I +  G++V+   ++
Sbjct: 946  PQEAIYEACTTRFRPIMMTTIAALLGALPLMLGFGVGSELRQPLGIAVVGGLLVSQMLTL 1005

Query: 814  FIAAPILLFIYDWRAKNA 831
            F    I L +     +  
Sbjct: 1006 FTTPIIYLQLERLFHRRQ 1023


>gi|254440186|ref|ZP_05053680.1| Protein export membrane protein, putative [Octadecabacter
           antarcticus 307]
 gi|198255632|gb|EDY79946.1| Protein export membrane protein, putative [Octadecabacter
           antarcticus 307]
          Length = 148

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 85/131 (64%), Gaps = 1/131 (0%)

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           +  L+ D+  T+G F+   I F+L  +AA+LT++GYS+ND VVV+DR+R+N++ Y  +  
Sbjct: 1   MVALVHDVVLTIGIFSELNIRFDLAIIAALLTIVGYSLNDTVVVFDRVRENLRKY-KAKD 59

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +++++ SINETL R+  TS    ++++ + V GG VI  F   M +G++V   SSIF+A
Sbjct: 60  LKEVLNLSINETLSRTFMTSFTTLLALISLYVLGGDVIRGFVFAMIWGVIVGTYSSIFVA 119

Query: 817 APILLFIYDWR 827
           +  LL +   R
Sbjct: 120 STSLLLLGVKR 130


>gi|148547408|ref|YP_001267510.1| acriflavin resistance protein [Pseudomonas putida F1]
 gi|148511466|gb|ABQ78326.1| acriflavin resistance protein [Pseudomonas putida F1]
          Length = 1032

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 61/583 (10%), Positives = 156/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YKLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + +TL F      +    +V   +   
Sbjct: 56  PQVMTSAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + VL+   I        + +  +  +   ++        
Sbjct: 116 SNLLPSDLPAPPVYNKVNPADTPVLT-LAISSKTMPLPKLNDLVDTRVAQKLAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   L         +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   ++ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLRSPEEYANLILAYNNGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +           V          +    
Sbjct: 275 ANENHAVLLNIQRQPGANVIEVVDRIKGLLPSITDNLPAGLDVSVLTDRTQTIRAAVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      L+   ++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVMVTFVFLRRLSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQGRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +  A  W +    L  + ++  L      Y +  KG   + 
Sbjct: 515 KHYGSALQWVLKHQPLTLLVAVASLVLTVFLYMVVPKGFFPVQ 557



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I  + M+ ++++R +    L     + L +  T G   L G   N   + A+    G+
Sbjct: 340 IAIVLVVMVTFVFLR-RLSATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +      +      K   +     +  + +    ++P+      
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G +   FAI +A  I+++   S+ +   +   +     K
Sbjct: 456 VGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +        +S RD I ++        + T++AA    +P+ +    G  + 
Sbjct: 928  IMMIDFALE--AERHQGMSPRDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELR 985

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                + M  G++V+   ++F    I L+      +
Sbjct: 986  QPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRLARR 1020


>gi|150008127|ref|YP_001302870.1| putative aminoglycoside efflux pump [Parabacteroides distasonis
           ATCC 8503]
 gi|255015080|ref|ZP_05287206.1| putative aminoglycoside efflux pump [Bacteroides sp. 2_1_7]
 gi|298376447|ref|ZP_06986402.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_19]
 gi|149936551|gb|ABR43248.1| putative aminoglycoside efflux pump [Parabacteroides distasonis
           ATCC 8503]
 gi|298266325|gb|EFI07983.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_19]
          Length = 1054

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/634 (11%), Positives = 169/634 (26%), Gaps = 42/634 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPVDQYPQITPPV-------------VKISATYPGASALTVSQAVATPIEQELNGTPGMI 77

Query: 88  VFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +    IT++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMQSSSSNSGSLNITVTFDVSADADLAAVEIQNRVKLAESRLPAEVIQNGITIEKQAPSQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++      D      I  S       +D +       +          +     P RL  
Sbjct: 138 LMTLSLMSDDPKFDEIYLSNFATINVLDVLRRIPGVGRVSNIGSRYYGMQIWVYPDRLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           +  T + +       N        G + + D D                L          
Sbjct: 198 MGLTVSDLQDALKDQNRESAAGELGKQPVLDVDVT--------------LPITAPGRLST 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +    +       +                +    
Sbjct: 244 VKEFEDIVVRANPDGSIVRMSDVARVSLEASSYSTESGINGKNAAILGIYMLPGANALEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
                     +                      S      T      LV++V+F+ +   
Sbjct: 304 ATKVKEAMKDISKNFPEGLEYNFPFDMTEYISQSVHEVYKTLFEALFLVVLVVFLSLQNW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN-R 443
           +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +      
Sbjct: 364 RAALIPTIAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGIVVDDAIVVVENVERIMAE 423

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
           +  +   +           +  +++      V + F G   G   R F++T+ +S+L+S 
Sbjct: 424 ERVTAREATHKAMRELSGALIATSMVLAAVFVPVSFLGGITGQLYRQFSVTIVVSVLLST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA------IQFMRARFWGVGISI 554
             A+++  AM   I+R    K   I      +L            I     R    G  +
Sbjct: 484 VVALTLSPAMCAIILRPSHKKKAFIFRKINLWLAKGNKKYTKLLRISIANPRRILAGFGM 543

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
           +     +            + +G   + +       L   R+  +               
Sbjct: 544 VLVAIFVLNRMLPTSFIPEEDQGFFTVELEMPEGTTLERTRAVTDRAIEFLDHHPAVAYV 603

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +N          +    T  + +   +  +   +
Sbjct: 604 QNVTGSSPRVGTNQGRATLTVILKPWEERKSSGM 637



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 689  KWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  + +L +  +   LG +A  G+E ++     ++TLIG +  + +++ +  +  
Sbjct: 889  SWIVPIAVLLSLPVATLGAYLGIWA-TGLENDIYYQIGLVTLIGLAAKNAILIVEFAK-- 945

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                   +        +        + TS+A  + +LPM +    G +   S    + FG
Sbjct: 946  -VQVDNGVDVVRAAIHAAQMRFRPILMTSLAFVLGMLPMVLASGPGSASRHSIGTGVFFG 1004

Query: 805  IVVAASSSIFIAAPILLFIYDWRAK 829
            ++VA +  I +     + IY  + K
Sbjct: 1005 MLVAITVGIVLVPFFFVLIYKIKGK 1029



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL     + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +     
Sbjct: 363 WRAALIPTIAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGIVVDDAIVVVENV--ERI 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPM 801
           +    ++ R+   K++ E  G  + TSM      +P+  + G  G +   F++ +
Sbjct: 421 MAEERVTAREATHKAMRELSGALIATSMVLAAVFVPVSFLGGITGQLYRQFSVTI 475


>gi|300723577|ref|YP_003712882.1| multidrug transport protein [Xenorhabdus nematophila ATCC 19061]
 gi|297630099|emb|CBJ90736.1| multidrug transport protein (RND family) [Xenorhabdus nematophila
           ATCC 19061]
          Length = 1057

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/653 (10%), Positives = 171/653 (26%), Gaps = 43/653 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 19  RPVATTLFMVAILLAGLI-----GYRMLPVSALPQVDYPTIQ---------VVTLYPGAN 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  S   +     V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSRSSGGASVITLVFQLSLPLDVAEQDVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     + +        VL+   +        +    +  +   +I        
Sbjct: 125 SNLLPEDLPYPPIYSKVNPADPPVLT-LAVTSDAQPMTQVQDMVETRVAQRISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +      +  +    +  N +     F       +  +   
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIASQGLDSDVIRSAIMKANVNSAKGSFDGPTRSITISSN-- 241

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                K+     ++                +I +       G  
Sbjct: 242 ------------------DQMKSVDDYRNLIVAYKNDAPIRLRDVASIEQGAENNKLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    +   L +         V          S    
Sbjct: 284 ANEKPAIVINVQRQPGANVIDTTDNIRAMLPELISSLPKSVKVDVLTDRTVTIRHSVKDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L+++ T A++   G ++   ++  + +
Sbjct: 344 QFELLLAIALVIMVIYLFLRNVTATLIPSIAVPLSLVGTFAVMYFCGFSVNNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     + +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIERGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL--SRFFLIPDC 537
             G   R FAIT+ ++ILIS   ++++   M   +++ +     +       RFF     
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLKSEAEIKHNRFEQACERFFERMIE 523

Query: 538 IAIQFMRA---RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
           I   F++      W        ++    LL+          +    +      P  +S  
Sbjct: 524 IYAVFLKRVLNHPWITLGVAFGTMFLTALLYIMIPKGFFPLQDNGLIQGTLETPQSISFN 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +  Q+  +  Q+   +             ++   R+   +K        
Sbjct: 584 AMTEKQRQVTRLLLQDPAVDNVTTFIGVDGNNPTLNNARLQITLKPISQRDDH 636



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 85/270 (31%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             SI  S            N  + +K    + +     ++     + L +      +   
Sbjct: 233 TRSITISSNDQMKSVDDYRNLIVAYKNDAPIRLRDVASIEQGAENNKLGAWANEKPAIVI 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +     +            ++  + K +   V              +  EL+    
Sbjct: 293 NVQRQPGANVIDTTDNIRAMLPELISSLPKSVKVDVLTDRTVTIRHSVKDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 349 --LAIALVIMVIYLFLR-NVTATLIPSIAVPLSLVGTFAVMYFCGFSVNNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIERGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492



 Score = 45.8 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 81/210 (38%), Gaps = 6/210 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V   +      +  + +  V++    I    +I           ++ +   +  ++ + +
Sbjct: 816  VTFSFNVAKGSSLEQAVNAVQETEHAIQMPKSIVTQFQGATLAFQDALSNTLWLILAAVV 875

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            AM I + + ++ +   +  ++TL       L    + G E ++ A+  ++ LIG    + 
Sbjct: 876  AMYIVLGVLYESFIHPVTILSTLPTAGVGALLALMVGGYELDIIAIIGIILLIGIVKKNA 935

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ D            ++  + I ++        + T+MAA +  LP+ +    G  + 
Sbjct: 936  IMMID--FALAAEREQGMTPYEAIYQACLLRFRPILMTTMAALLGALPLMLSTGIGAELR 993

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                + M  G++++   ++F    I L   
Sbjct: 994  RPLGVSMVGGLIMSQILTLFTTPVIYLLFD 1023


>gi|238753854|ref|ZP_04615214.1| Multidrug resistance protein mdtB [Yersinia ruckeri ATCC 29473]
 gi|238707842|gb|EEQ00200.1| Multidrug resistance protein mdtB [Yersinia ruckeri ATCC 29473]
          Length = 1048

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 64/557 (11%), Positives = 149/557 (26%), Gaps = 38/557 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGIM-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLALPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPNDLPYPPIYSKVNPADPPILT-LAVTATALPMTQVEDMVETRIAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  +   +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAPAVAAVGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   ++                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEDYRNLIVAYQQGAPVRLQDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           V          S S  
Sbjct: 284 ANKQPAIVLNIQRQPGVNVIATADSIREMLPQLVKSLPKSVDVQVLTDRTTTIRASVSDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIVLVVMVIYLFLRNAAATLIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLVFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAITLAIAILISAVVSLTLTPMMCARMLNYESLRKQNRLSRASETFFNWIIA 523

Query: 540 IQFMRARFWGVGISILF 556
                 +       +  
Sbjct: 524 HYAAGLKKVLRHQWLTL 540



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            N  + ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSAEDYRNLIVAYQQGAPVRLQDVATIEQGAENNKLAAWANKQPAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +           ++++ + K +   V              +  EL+    
Sbjct: 293 NIQRQPGVNVIATADSIREMLPQLVKSLPKSVDVQVLTDRTTTIRASVSDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I  + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 349 --LAIVLVVMVIYLFLR-NAAATLIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLVFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAIAILISAVVSLTLTP 492



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 82/223 (36%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++     + +   +  +    ++ + +   E+   + I           +  +   +  +
Sbjct: 811  DQFPSATVSFNVANGYSLGEAVKTITQTEQELNMPADITTRFQGATLAFQAALGSTLWLI 870

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + +AM I + + +  +   +  ++TL       L    L G E ++ A+  ++ LIG 
Sbjct: 871  VAAIVAMYIVLGVLYKSFIHPVTILSTLPSAGVGALLALMLAGHELDVIAIIGIILLIGI 930

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D            ++  D I ++        + T++AA    LP+ +    
Sbjct: 931  VKKNAIMMID--FALAAERKQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSSGV 988

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     I M  G++V+   ++F    I L          R
Sbjct: 989  GAELRQPLGICMVGGLLVSQVLTLFTTPVIYLLFDPLARNTRR 1031


>gi|297538959|ref|YP_003674728.1| acriflavin resistance protein [Methylotenera sp. 301]
 gi|297258306|gb|ADI30151.1| acriflavin resistance protein [Methylotenera sp. 301]
          Length = 1015

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 73/543 (13%), Positives = 158/543 (29%), Gaps = 48/543 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ M+   G++           +  FP           LDL     + +   
Sbjct: 9   RNPIPAIMLFVMLSFAGVIS-----YQAMKVQNFPD----------LDLP---TVDITAS 50

Query: 62  EDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   L+       +   + L+        ++     IT+ F   +  +   D V  
Sbjct: 51  LPGASPAQLETEVARKIENNLASLQGLKHIYTKVQDGVVSITVEFRLEKPVQEAVDDVRS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V + L  D +   +         I+    +   +   A   S  +  +   ++   
Sbjct: 111 AVAQVRADLPSDLRDPEISKLNVASSPILSYTISSPNMDGEA--LSWFVDNELTKKLLSV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +      +  ++  E DP++L+ L  T A++S    L      G    +       
Sbjct: 169 KGLGKVSRVGGVNREIRVELDPNKLQALNATVAEISHQLKLSQMESAGGRTKL------- 221

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                        G             + + + +I  +    R+        +    A  
Sbjct: 222 -------------GDSEQPMRTIATVNSAEAIGNIELNLTDGRKITLNQIAKVSDSFAEP 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L    +     S     S     +      A L+     I L       V     
Sbjct: 269 RSAAFLDGKPVVGFEISRSKGASEIEVGDGVEKAFAELKLKHPDIILTE-AFNFVQPVRD 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                       A L + V+ + +   +   V   ++ L+VI     +S  G ++ + ++
Sbjct: 328 EYKASITMLIEGAILAVFVVLLFLRNWRATFVCAVALPLSVIPAFIGMSNFGFSINIVTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + L IG+ VD  I+  E I    R  ++ + +           +  +  T +   +  
Sbjct: 388 LALSLVIGILVDDAIVEVENIVRHLRMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPT 447

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + F  T   +I  S+  A  +   M  ++++       D   +  +   
Sbjct: 448 AFMSGIPGKFFKQFGWTAAFAIFASLVVARVLTPMMSAYLLKSNNTHQEDGAMMRTYLRW 507

Query: 535 PDC 537
              
Sbjct: 508 SHW 510



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 79/250 (31%), Gaps = 10/250 (4%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I+L +   R + L+ +    +S      +              + +    +     +E
Sbjct: 241 GNIELNLTDGRKITLNQIAKVSDSFAEPRSAAFLDGKPVVGFEISRSKGASEIEVGDGVE 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               ++    P   +         +  E      + +  + +A+ + +     W      
Sbjct: 301 KAFAELKLKHPDIILTEAFNFVQPVRDEYKASITMLIEGAILAVFVVLLFLRNWRATFVC 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L +       + FG   N+  + A+  +IG  V+D +V  + +   ++      +
Sbjct: 361 AVALPLSVIPAFIGMSNFGFSINIVTLLALSLVIGILVDDAIVEVENI---VRHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
                 ++ +E     + T+       LP A   G        F    AF I     +S+
Sbjct: 418 PYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIPGKFFKQFGWTAAFAI----FASL 473

Query: 814 FIAAPILLFI 823
            +A  +   +
Sbjct: 474 VVARVLTPMM 483



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 72/198 (36%), Gaps = 9/198 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                         +    V E VK   +     + I+ TEI   ++  EL     + ++
Sbjct: 792 DRTRNVQIEVELSKLTLGDVTEAVKHLPSLQKLPAGIKQTEIGDAEVMNELFGSFALAML 851

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
              + + I + I FK +      +  L L +        + G  F++ ++  ++ L+G +
Sbjct: 852 TGVLCIYIVLVILFKDFLHPFTILVALPLSLGGAFVALLVAGKSFSMPSLIGLVMLMGIA 911

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPMAVWG 790
             + +++ +     +      +S  D +  + ++     V T++A     + +      G
Sbjct: 912 TKNSILLVE--YAIVAQRDHGLSRFDALIDACHKRARPIVMTTIAMGAGMLPIAAGWSAG 969

Query: 791 GSVIGSFAIPMAFGIVVA 808
            +   S   PMA  ++  
Sbjct: 970 DTSFRS---PMAVAVIGG 984


>gi|258542060|ref|YP_003187493.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256633138|dbj|BAH99113.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636195|dbj|BAI02164.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639250|dbj|BAI05212.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642304|dbj|BAI08259.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645359|dbj|BAI11307.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648414|dbj|BAI14355.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651467|dbj|BAI17401.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654458|dbj|BAI20385.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 1063

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/538 (13%), Positives = 145/538 (26%), Gaps = 38/538 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   GLL           +   P                         
Sbjct: 9   RRPVATTLLMLAIFMAGLL-----GYHFLPVSALPQVDYPTIT---------VETFYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D ++  +    +     +              + ITL FA     +    +V   +  
Sbjct: 55  GPDVMSTSVTAPLETQFGQMPGLDQMTSRSSGGASVITLRFALDTSIDVAEQEVQAAINQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            NS L  D     +        + VL+   I        E    +  +   +I       
Sbjct: 115 ANSLLPTDLPAPPVYAKVNPADTPVLT-LGITSSTIPLPEVEDYVDTRLAQKISQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +    +  +L         +       N +     F       +     
Sbjct: 174 LVTLSGGNRKAIRVRVNIPKLTSYGMDLDTLRTTIGNVNVNSPTGTFDGPQKAATLQVDG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +    +    +          V +  +      +  +T               
Sbjct: 234 QITSADVLLNQVIAYQNSGPIRLRDVATVVVGAENTQLAAWSNLT--------------- 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++        LR    P                S S 
Sbjct: 279 -----PALIMNVQRQPGANVISVVDNVKATLPALRETLPPGIDITPLTDRTTTIRASVSD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G   +   LV+ V+F+ +      ++   S+ L++I TLA++ LL  +L   S+  + 
Sbjct: 334 VQGELFLSLALVVAVIFVFLRNIPATIIPSLSVPLSIIGTLAVMYLLDFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I       +    +   G      TI    I+ +   + L F G
Sbjct: 394 IATGFVVDDAIVMIENISRYVEAGEDRMTAALKGAGEIGFTIISLTISLIAVLIPLLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
              G     FA+T+ ++I++S   ++++V  M   I+  +   +       + +    
Sbjct: 454 DVVGRLFHEFALTLAVTIILSAVVSLTLVPMMCARILSERVHDASSATTAFQRWSARM 511



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 85/244 (34%), Gaps = 12/244 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+A +      +R     +   + +           + +  Q         V++ VK  
Sbjct: 244 QVIAYQNSGPIRLRDVATVVVGAENTQLAAWSNLTPALIMNVQRQPGANVISVVDNVKAT 303

Query: 642 ITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
           +  +                +  +       +G + + ++ +  +I++++R      +  
Sbjct: 304 LPALRETLPPGIDITPLTDRTTTIRASVSDVQGELFLSLALVVAVIFVFLR-NIPATIIP 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++ L I  TL    L     +  ++ A+    G+ V+D +V+ + +    +       
Sbjct: 363 SLSVPLSIIGTLAVMYLLDFSLDNLSLMALTIATGFVVDDAIVMIENI---SRYVEAGED 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                 K   E     +  +++    ++P+   G   G +   FA+ +A  I+++A  S+
Sbjct: 420 RMTAALKGAGEIGFTIISLTISLIAVLIPLLFMGDVVGRLFHEFALTLAVTIILSAVVSL 479

Query: 814 FIAA 817
            +  
Sbjct: 480 TLVP 483


>gi|261820617|ref|YP_003258723.1| multidrug efflux system subunit MdtC [Pectobacterium wasabiae
           WPP163]
 gi|261604630|gb|ACX87116.1| acriflavin resistance protein [Pectobacterium wasabiae WPP163]
          Length = 1026

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 63/604 (10%), Positives = 147/604 (24%), Gaps = 24/604 (3%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +     +        +      ++ L F   R     A 
Sbjct: 47  VSASLPGASPETMASAVATPLERALGRIAGVNEMTSTSSLGSTRVILVFNLDRDINGAAR 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    + L                 + V+    +        +       Q   +
Sbjct: 107 DVQAAINAAQNLLPSGMSNRPTYRKVNPSDAPVMI-LTLTSDTYSQGQLYDFASTQLSQK 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I   E           L  +    +P  L     +   +       N  +          
Sbjct: 166 ISQMEGVGDVSIGGSSLPAVRVALNPVALFNQGISLDDVRQTIAQANVRRPLGNVENSQR 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    ++                           +                 +   
Sbjct: 226 SWQIQTNDELKTA--------------------DAYAPLIIHYNNGAAVRLSDVATVEDS 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +    +  +  A      +       +   T++        LRA         V +    
Sbjct: 266 VQNARNAGMANAKPAILVMIRRAPDANIITTVDNIRAAMPELRASLPAEIQLDVAQDRSP 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S +  + +  I   LV++V+F+ +  G+   +   ++ +++I T A + L G +L 
Sbjct: 326 TIRASLAEVEQSLIIAVALVILVVFLFLRSGRATAIPALAVPVSLIGTFAAMYLCGFSLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I+V E I            +   G      T+   +++ +  
Sbjct: 386 NLSLMALTIATGFVVDDAIVVLENISRHIEAGMKPLQASLQGVREVGFTVLSMSLSLVAV 445

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L    G      R FA+T+ ++I+IS+  ++++   +   ++R    +S        
Sbjct: 446 FIPLLLMDGLPGRLFREFAVTLSVAIMISLLISLTLTPMLCARLLRAVPKRSQPRTRGFN 505

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+                   +L  +     L               Q        + 
Sbjct: 506 RVLLAMQQGYGRSLKWVLNHARWVLLLLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQ 565

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                S                 +        +  G       +   +K      V    
Sbjct: 566 ADQSISFQAMTVKLQNFMTIVSSDPAVDNVNGFTGGSRTNSGSMFISLKPLSERDVSAQQ 625

Query: 651 IQNT 654
           + + 
Sbjct: 626 VISR 629



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 6/218 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            ++R             +   + +    +     +   +   P I   L       +I  
Sbjct: 283 VMIRRAPDANIITTVDNIRAAMPELRASLPAEIQLDVAQDRSPTIRASLAEVEQSLIIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           A+ +L+                 + + +  T     L G   N  ++ A+    G+ V+D
Sbjct: 343 ALVILVVFLFLRSGRATAIPALAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
            +VV + +    +     +       + + E     +  S++     +P+ +     G +
Sbjct: 403 AIVVLENI---SRHIEAGMKPLQASLQGVREVGFTVLSMSLSLVAVFIPLLLMDGLPGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              FA+ ++  I+++   S+ +   +   +     K +
Sbjct: 460 FREFAVTLSVAIMISLLISLTLTPMLCARLLRAVPKRS 497



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 92/286 (32%), Gaps = 7/286 (2%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
            +            ++                  + ++         ++ + +        
Sbjct: 736  ISTIYQPLNQYKVVMEVDDAYTQDVSSLNKMFVINSDGKPIPLSYFASWKPINAPLSVNH 795

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                  + +     +  D    T  +E     +     +    +      + S+      
Sbjct: 796  QGLSAASTISFNLPEGTDLSTATAAVERTMTSLGVPSSVRGQFSGTAQAFQQSQSSQLLL 855

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            I+  II+   +L    +   +   L  ++TL       L     FG+ F+L A+  ++ L
Sbjct: 856  ILAAIITVYIVLGV--LYESYVHPLTILSTLPSAGVGALLALEWFGVPFSLVALIGIMLL 913

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ D     +   +  +S RD I ++        + T++AA    LP+ + 
Sbjct: 914  IGIVKKNAIMMVD--FALVAQRSGKLSARDAIFQACLLRFRPIMMTTLAALFGALPLVLT 971

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +     I +  G+V++   +++    + LF    R    +
Sbjct: 972  SGDGAELRQPLGITIVGGLVMSQILTLYTTPVVYLFFDKLRTMRRK 1017


>gi|323525647|ref|YP_004227800.1| acriflavin resistance protein [Burkholderia sp. CCGE1001]
 gi|323382649|gb|ADX54740.1| acriflavin resistance protein [Burkholderia sp. CCGE1001]
          Length = 1109

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 158/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+   +   +       FP+                    L    
Sbjct: 10  RPVATTLLAIGIALSGIFAFMKLPVAPLPQVDFPTIS--------------VQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +               +IT+ F  +R  +  A  V   +   
Sbjct: 56  PDTVATSVASPLERHLGSIADVTEMTSMSSVGSTRITMQFGLNRNIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N          + ++    +      A +            +   E   +
Sbjct: 116 RADLPASLRSNPTYHKVNPADAPIMI-LALTSKTLTAGQLYDSAATVLQQSLSQVEGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VDVSGSANPAVRVELEPQALFHYGIGLEDVRAALAAANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G +      N          D+                 +   +  + +  +
Sbjct: 217 --KGSIEFGQNRVQIYTNDQASKAAQYRDLVIAYRNGSAVKLSDVAEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   TI+    +   L A         +          S    
Sbjct: 275 FNGKRSVLVILYRQPGANIIETIDRVTAMLPQLHASLPADVDITLTADRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  + +
Sbjct: 335 EHTLMIAVALVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +  +G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGVPRMKAAFLGAREVGFTVMSISISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R    +  +             + 
Sbjct: 455 IVGRLFREFALTLSLAIGVSLIVSLTLTPMMCSRLLREPHEQREEGRFGRWLERGFARMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +    L     +  +  +   Y +  KG     
Sbjct: 515 RGYERTLGWALLHPRLILFVLLATIGLNIWLYIVVPKGFFPQQ 557



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 92/266 (34%), Gaps = 9/266 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +   ++T+           + +       V LS V   ++S++              
Sbjct: 222 FGQNRVQIYTNDQASKAAQYRDLVIAYRNGSAVKLSDVAEVVDSVEDLRNLGLFNGKRSV 281

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG--IVGVI 674
            ++  +    + +     +  +  ++   +P               R  ++     + + 
Sbjct: 282 LVILYRQPGANIIETIDRVTAMLPQLHASLPADVDITLTADRSTTIRASLKDTEHTLMIA 341

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           ++ + M++++++R  W   L     + + I  T G   L G   +  ++ A+    G+ V
Sbjct: 342 VALVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALTIATGFVV 400

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +VV + +    +     +           E     +  S++     LP+ + GG V 
Sbjct: 401 DDAIVVLENI---SRHIENGVPRMKAAFLGAREVGFTVMSISISLVAVFLPILLMGGIVG 457

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAA 817
                FA+ ++  I V+   S+ +  
Sbjct: 458 RLFREFALTLSLAIGVSLIVSLTLTP 483



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 97/238 (40%), Gaps = 7/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S   G+         +     + +     V+ +   + + + + EI   +TI  + 
Sbjct: 860  SAIASFGPGNTPLSVNHQSQFVASTISFNLPPGVSLSTATQAIYQTMAEIGMPATIHGSF 919

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++ +    + ++ +  A+ I + I ++ +   L  ++TL       L    LF
Sbjct: 920  QGTAQAFQQSMSDQPILILAALAAVYIVLGILYESYIHPLTILSTLPSAGVGALLALLLF 979

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              EF++ A+  V+ LIG    + +++ D   +  +      S RD I ++        + 
Sbjct: 980  QTEFSIIALIGVILLIGIVKKNAIMMVDFAIEASR---HGRSSRDAIHEACLLRFRPIMM 1036

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+ AA +  LP+A     G  +     I +  G++++   +++    + L++   R +
Sbjct: 1037 TTFAAMLGALPLAFGRGEGAELRAPLGIAIVGGLIMSQMLTLYTTPVVYLYMDRIRVR 1094


>gi|149181396|ref|ZP_01859893.1| cation efflux system [Bacillus sp. SG-1]
 gi|148850959|gb|EDL65112.1| cation efflux system [Bacillus sp. SG-1]
          Length = 1009

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/598 (14%), Positives = 186/598 (31%), Gaps = 41/598 (6%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             +I  +G +  L     +  L   P   P           G      E      V   +
Sbjct: 1   MVLILILGGVSLL-----RIPLKLIPDINPPV---------GVVVTTYEGASPTEVVEKV 46

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               ++  + L        + R+  N I L F+ +   + I D+V   L GV   L  D 
Sbjct: 47  TKPLEDTLATLPGIKSIQSTSREGSNFILLEFSWTTSIDEIQDEVLQRLDGV--PLPDDA 104

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           +    +     +  I+         + +  + + +        +  +E       S    
Sbjct: 105 EDPRFLKFDPSQFPIIQVSLKETDNVENLQDLAED----LKLDLTKTEGVASVNVSGVNA 160

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            ++  E D  +L++   T + +       N +  G          +      ++D  EI+
Sbjct: 161 DEIAIELDQEKLKEYRLTQSDVVNTIRANNITMPGDTITTGEKTLTTRVVSQLDDAEEIA 220

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
           G                 +V     E G     E   +   +        R      +  
Sbjct: 221 G-----------------LVIGKNPETGKNIVLEDVAEVEKRKQESNTITRADRKDAVLL 263

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
           ++       +   +      L  ++           +          +      +  +  
Sbjct: 264 SVLQESDANTAEVSDAFQDKLNQLMDQDRYGNIEADILFDQGDYIKDAIGNIANSLILGG 323

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
              ++VLF+ +   K  L+   +I  +VI+T  L+      L + ++  + LGIG+ VD+
Sbjct: 324 AFAMLVLFLFLRNIKSPLIIGVAIPYSVIVTFVLMFFADFALNIMTLGALALGIGMLVDN 383

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRG 487
            I+V E I       +    +   G     + I  S +T +   + + F     G     
Sbjct: 384 AIVVIENIYRHLSMGKDPKQAARDGAKEVGTAITASTLTTVAVFLPVVFISGLIGQLFTE 443

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
           FA+T+  S+  S+  A++++  +   +++  K     I   S+     +      ++ R+
Sbjct: 444 FALTISFSLFASLVVALTVIPMLASRMLKTSKGNHEAIRRRSKSMKTFEKSIHWSLKHRW 503

Query: 548 -WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
              +  +I  +     L            +G   + +       L    S +E+++  
Sbjct: 504 AVLLITTIFLAAGGFGLTTVGTQFLPPTDEGFFNMNIKLENGSSLEETNSVVEAIENE 561



 Score = 81.7 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 76/234 (32%), Gaps = 15/234 (6%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           S      ++   V L            V +  + K+ +++      N E        + I
Sbjct: 249 SNTITRADRKDAVLLSVLQESDANTAEVSDAFQDKLNQLMDQDRYGNIEADILFDQGDYI 308

Query: 667 RKGIVGVIISAI-----AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
           +  I  +  S I     AML+           L     +   +  T           N+ 
Sbjct: 309 KDAIGNIANSLILGGAFAMLVLFLFLRNIKSPLIIGVAIPYSVIVTFVLMFFADFALNIM 368

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            + A+   IG  V++ +VV + +    +  +     +        E       +++    
Sbjct: 369 TLGALALGIGMLVDNAIVVIENI---YRHLSMGKDPKQAARDGAKEVGTAITASTLTTVA 425

Query: 782 SVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             L  + + G  G +   FA+ ++F    +  +S+ +A  ++  +     K ++
Sbjct: 426 VFLPVVFISGLIGQLFTEFALTISF----SLFASLVVALTVIPMLASRMLKTSK 475



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 95/234 (40%), Gaps = 8/234 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +    I D   +    ++   V+   +         + E+V +KI  +      + T 
Sbjct: 766 DKVVDFSIEDGPVRIQRIDQQGSVQFTLKYSSETNLGEISEIVDEKIAGLNIAEETEVTF 825

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
               ++  + I   ++ + ++ I + I +  +F+ + +    + T+ L +        + 
Sbjct: 826 SGDRELMEDSIDDMVLAIGLAIILVYIVMAAQFESFKYPFVIMFTVPLMVIGVALALTIT 885

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
               +++AV  V+ L G  VN+ +V+ D +    +     +   + I  S+ +     + 
Sbjct: 886 RTPISISAVIGVIVLAGIVVNNAIVIVDYIN---QKKANGMDSYEAIVDSVKDRARPILM 942

Query: 775 TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           T++   + + P+A+    G  +     I +  G+V +   ++++  P++  ++D
Sbjct: 943 TALTTILGLAPLALGLGEGTEINQPMGITVIGGLVSSTLLTLYVI-PVMYSLFD 995



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 53/517 (10%), Positives = 142/517 (27%), Gaps = 31/517 (5%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W V+L + I        L     Q +             ++ + L  GS L        
Sbjct: 502 RWAVLLITTIFLAAGGFGLTTVGTQFLPPTDEGFF-----NMNIKLENGSSL-------- 548

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                     + + + L+KE      +         SF     +      V L       
Sbjct: 549 ---EETNSVVEAIENELEKEEAIDVYVSLTGTNQEQSFRGQSNRNIAEIYVKLK------ 599

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
              ++ +   +    ++    +          +           Q    +  S       
Sbjct: 600 --PLEERGISVFKLVDQLKPKIEEAALTQNETASVGFNLQSTSGQSPQTLSFSVRDTNSE 657

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
             +  + ++    + ++    + T  +    +V     +K  +               V 
Sbjct: 658 RLNEAVEKIQKSLESAQSVTDVKTDQEELIQEVQLIVDRKAALDEGLVPAGIAQTVNDVT 717

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
             V  + I  +          +   +  + D +            I     V        
Sbjct: 718 RGVPAAQIVGDADDIYNVFVRYDREITENLDSLKKLEIQNAQGQFIQLDKVVDFSIEDGP 777

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
             +                +    G ++ ++      + +    E     D         
Sbjct: 778 VRIQRIDQQGSVQFTLKYSSETNLGEISEIVDEKIAGLNIAEETEVTFSGDRELMEDSID 837

Query: 365 TCAIVAGLVLIVLFMI----VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
              +  GL +I+++++        K+  V  F++ L VI     L++    +++ ++ G+
Sbjct: 838 DMVLAIGLAIILVYIVMAAQFESFKYPFVIMFTVPLMVIGVALALTITRTPISISAVIGV 897

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL---IATVVL 477
           ++  G+ V++ I++ + I ++       + ++          I  + +T +       + 
Sbjct: 898 IVLAGIVVNNAIVIVDYINQKKANGMDSYEAIVDSVKDRARPILMTALTTILGLAPLALG 957

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G    +   IT+   ++ S    + ++  M    
Sbjct: 958 LGEGTEINQPMGITVIGGLVSSTLLTLYVIPVMYSLF 994


>gi|237708082|ref|ZP_04538563.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229457910|gb|EEO63631.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 1033

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/633 (10%), Positives = 171/633 (27%), Gaps = 44/633 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPIDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQELNGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMESNSSNSGGFSATVTFDISADPDLAAVEIQNRIKLAESRLPAEVIQNGISVEKQAASQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++             I  S       +D I       +          +     P +L  
Sbjct: 138 LLTLCLTSTDPKFDEIYLSNFATLNVLDLIRRIPGVGRVSNIGSRYYAMQIWVQPDKLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T A +       N      + G + ++  D     +  +  +S              
Sbjct: 198 FGLTVADLQNALKDQNRESAAGVLGQQPVQGLD-VTIPITTQGRLS-------------T 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 I            +                +    
Sbjct: 244 VSQFEEIVVRANADGSIIRLRDVARISLEAQSYNTESAINKENAAVLAIYMLPGANAMEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            ++       +           +          S      T      LV+IV+++ +   
Sbjct: 304 AKSVKEAMEEISKNFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVIIVVYLSLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  ++   ++ +++I T   + + G +L + ++ G+VL IG+ VD  I+V E +     +
Sbjct: 364 RATVIPLVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMEE 423

Query: 445 NQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
            + S + +           I  +++      V + F G   G   R F +T+ +S+L+S 
Sbjct: 424 EKLSPYQATKKAMEGLTGAIIATSLVLAAVFVPVSFLGGITGQLYRQFTVTIVVSVLLST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR--------ARFWGVGI 552
             A+++   M   I++ +           R          +++          R      
Sbjct: 484 VVALTLSPVMCSLILKPEDPNKKKNIIFRRINKWLAIGNHKYVGLIKHIVKHPRRVLSTF 543

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            ++     +           I+ +G  ++ +       L   R   E      +     +
Sbjct: 544 GMVLIAILLIHRIIPTSFLPIEDQGYFKIELELPEGATLERTRIVTERAVEYLMENPAVE 603

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             ++                  + +   +  + 
Sbjct: 604 YVQSVAGSSPRVGTSQARSELTIILKPWEERDS 636



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 102/297 (34%), Gaps = 13/297 (4%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            F   + +   + +        +   +        +    + +   R  D +++   L SL
Sbjct: 741  FSTMKAYTGSVYVNDFNMFNRIYRVYIQAEAPYREHKENINLFFVRGTDNAMI--PLTSL 798

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                 +      ++  +       G++       + ++                      
Sbjct: 799  GTTSYTTGPGSIKRFNMFNSSVIRGEAADGYSSGQAMEIIEQIAREHLPENIGVEWSGLS 858

Query: 662  SRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTL-ILDITKTLGFFALFGIE 717
             +E    G  G++++ + M +++    +   W   +  + +L +  +   LG +   G+E
Sbjct: 859  FQEKQAGGQTGMVLALVFMFVFLFLAALYESWMVPVAVLLSLPVAALGAYLGVWG-CGLE 917

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             ++     ++ L+G +  + +++ +  ++ +      I        +        + TS+
Sbjct: 918  NDVYFQIGLVMLVGLAAKNAILIVEFAKEQV---DRGIDVVQAALHASQLRFRPILMTSL 974

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A  + +LPM +    G +   +    + FG++ A +  I +     + IY  +AK  
Sbjct: 975  AFILGMLPMVIASGPGSASRQAIGTGVFFGMIFAVTVGILLVPFFFVLIYKMKAKMK 1031



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 12/223 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               ++ V AN    +  +R                   K     L            V 
Sbjct: 245 SQFEEIVVRANADGSIIRLRDVARISLEAQSYNTESAINKENAAVLAIYMLPGANAMEVA 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWY 691
           + VK+ + EI        +  +   ++  +             A+++ I + +     W 
Sbjct: 305 KSVKEAMEEISKNFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVIIVVYLSLQSWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNM 748
             +  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV    +R+ +  
Sbjct: 365 ATVIPLVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMEE- 423

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
                 +S      K++    G  + TS+      +P++  GG
Sbjct: 424 ----EKLSPYQATKKAMEGLTGAIIATSLVLAAVFVPVSFLGG 462


>gi|28868518|ref|NP_791137.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28851756|gb|AAO54832.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 1034

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/523 (13%), Positives = 149/523 (28%), Gaps = 42/523 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVD 61
               ++L   I  +G++       P+  +   P A                 +   L   
Sbjct: 15  PVATLLLTFAIVLLGVIA-----FPRLPIAPLPEAEFPT-----------IQVTAQLPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        S       +TL F  ++  +  A +V   +  
Sbjct: 59  SPETMASSVATPLEVQFSAIPGMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINT 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D              S VL   ++   +    E S         Q+   E   
Sbjct: 119 AAGRLPADMPSLPTWRKVNPADSPVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVG 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   + +    +  +  P +L  L  T A +                             
Sbjct: 178 QVFITGQQRPAIRVQAAPEKLAALGLTLADIRLAV--------------------QQTSL 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +          ++  ++N      +    +                 +           
Sbjct: 218 NLAKGALYGKDSISTLSSNDQLFKPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKA 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L+          V          S   
Sbjct: 278 WSGDQQGVNIAIFRQPGANIVETVDRIQRELPRLQEMLPATVDVSVLNDRTRTIRASLHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+ V+ + +      L+    + +++I + A++ L G +L   ++  IV
Sbjct: 338 VEMTLLIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E I       Q +  +   G      T+   + + L A + L F G
Sbjct: 398 VAVGFVVDDAIVVVENIHRHLEAGQGMREAAIKGSGEIGFTVVSISFSLLAAFIPLLFMG 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G   + FA+T   +ILIS+  ++++   +    +R     
Sbjct: 458 GVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMRAPTHN 500



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVETVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPATVDVSVLNDRTRTIRASLHEVEMTLLIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLLAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 78/202 (38%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   + I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVRMLDQAKIEIGMPAAIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  V+ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGVVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               ++ ++ I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLTPQEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     + 
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHRR 1021


>gi|310657771|ref|YP_003935492.1| acriflavin resistance protein [Clostridium sticklandii DSM 519]
 gi|308824549|emb|CBH20587.1| Acriflavin resistance protein [Clostridium sticklandii]
          Length = 1047

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 71/552 (12%), Positives = 177/552 (32%), Gaps = 42/552 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+L  +   +GL+      L +  +D +P       I           +     
Sbjct: 9   KRPVTTVMLMLIAVLLGLVS-----LNRLPVDLYPEIEVPVAI---------VSVDYSGV 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +++ S +          RQ  + I + F      +  A ++   +  
Sbjct: 55  APAEMETLVTKPLEQVLSTVSDLDAISSYSRQGSSIIIVQFQYGTNMDFAALEMREKVDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L       +++      + ++    +    I        + I  RI+++   +   
Sbjct: 115 VKGALPDGSGTPMVLKIDPNAMPVIALSMSSQMPIDKLQSIVEDDISSRIERL---DGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++  E + ++L     + A++                             
Sbjct: 172 SVSSSGGKEKEIRVELNQAKLSGYGLSIAQIQNVLRSE--------------------NL 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +       G          + +T   + +I                ++ +    +    
Sbjct: 212 NLPGGTVKRGDQELIVRTTGEFRTVDEIRNIPLTLRSGESIRLYDVASVEEKYKDINSMS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S ++  +     E+  +    L+A    I + I           S S 
Sbjct: 272 RYNGESSISLSVSKQSVANTVKVAESVLLEVGKLKAEYPDINMEI-AMDQSEFINKSISN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      L +I+LF+ +   +   +   +I ++++ T AL+     ++ L S+ G+ 
Sbjct: 331 VVASAVGGGLLAVIILFLFLRNIRSTFIVGIAIPVSIVTTFALMYFADLSINLISLGGLA 390

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           LG+G+ VD++I+V E I     ++   +  +   G  +    +F S +T +   + + F 
Sbjct: 391 LGVGMLVDNSIVVLENIYRLAEQEGYQMEKAAIEGTKQVGMAVFASTLTTVAVFLPIVFV 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      +  + T+  S+L S+  A+++V  +   I++  + K  +    S   ++   
Sbjct: 451 EGFTAIIFKQLSYTVTFSLLSSLVVALTVVPMLSAKILKVGETKKREHKGFSLGRVLDVF 510

Query: 538 IAIQFMRARFWG 549
                  A+ + 
Sbjct: 511 SNGIDWVAKKYS 522



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/255 (10%), Positives = 76/255 (29%), Gaps = 9/255 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            I L + +   + L  V S  E  +  +   +        L   +    ++V     + +
Sbjct: 241 NIPLTLRSGESIRLYDVASVEEKYKDINSMSRYNGESSISLSVSKQSVANTVKVAESVLL 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K+    P   ++        I++ +       V    +A++I               
Sbjct: 301 EVGKLKAEYPDINMEIAMDQSEFINKSISNVVASAVGGGLLAVIILFLFLRNIRSTFIVG 360

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + + I  T        +  NL ++  +   +G  V++ +VV + +             
Sbjct: 361 IAIPVSIVTTFALMYFADLSINLISLGGLALGVGMLVDNSIVVLENI--YRLAEQEGYQM 418

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF 814
                +   +       +++      LP+     +   +    +      +  +  SS+ 
Sbjct: 419 EKAAIEGTKQVGMAVFASTLTTVAVFLPIVFVEGFTAIIFKQLSYT----VTFSLLSSLV 474

Query: 815 IAAPILLFIYDWRAK 829
           +A  ++  +     K
Sbjct: 475 VALTVVPMLSAKILK 489



 Score = 42.4 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 11/240 (4%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +    D S                          V+  ++K++ +               
Sbjct: 795  ADIEFDNSPTQIARANQVRTISVNSDISDRDLGSVVADIEKELEKYPLPDGYSYEFSGEQ 854

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRFKWY---FALGAITTLILDITKTLGFFALFGI 716
            +   E     ++ +++S I + + +  +F+     F +       L     +G F + G 
Sbjct: 855  EQMAEAFSGLVLALLLSLIIVYMILASQFESLLHPFTVMLSVPFALSGGF-IGLF-ITGK 912

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              +L A   ++ L G  VN+ +V+ D +    +L    +   D I K+  +     + T+
Sbjct: 913  ALSLPAFIGIIMLAGIVVNNAIVLIDYIN---QLRAKGMERNDAIIKAGKDRFRPIMMTT 969

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +   + +LPMA+    G + I   AI +  G+ ++   ++     +         +   +
Sbjct: 970  LTTVLGLLPMAIGLGEGSNTIAPLAIVVVGGLSLSTVLTLSFIPVVYTVFDGGSRRFKNL 1029


>gi|311103775|ref|YP_003976628.1| multidrug resistance protein [Achromobacter xylosoxidans A8]
 gi|310758464|gb|ADP13913.1| multidrug resistance protein MdtB 1 [Achromobacter xylosoxidans A8]
          Length = 1032

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/529 (10%), Positives = 141/529 (26%), Gaps = 38/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G +           +   P                    +     
Sbjct: 10  RPVATTLSMVAILIAGFIA-----YRLLPVSALPEVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F  +   +    +V   +   
Sbjct: 56  PDVMTSLVTSPLERQFGQMPGLNQMSSTSSGGASVITLQFNLTLPLDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D              + VL+   I        +    +  +   ++        
Sbjct: 116 SNLLPSDLPVPPTYNKVNPADAAVLT-LAITSPTMPLPQVRDLVDTRVAQKLSQIPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     + + +    V  N ++            +      
Sbjct: 175 VSVAGGQRPAVRVQVNPQALAANGLSMSDLRTAIVGANVNQPKGNLDGPQRSTTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                      D+                   +          
Sbjct: 235 LKTPTD--------------------YNDLIIAYKNNAPLRLSDVARAVEGAEDTRQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +     L   LRA         V          S +  
Sbjct: 275 AGDKPAILLNIQRQPGANVIDVVNRIQALLPQLRAALPATLDVSVVSDRTQTIRDSVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      L+    + L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFEMMLAVALVVMVTFVFLRSLTATLIPSVVVPLSLVGTFGIMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G S+   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMIENIARHIEEGETPLQAALKGASQIGFTLISLTFSLIAVLIPLLFMTE 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
             G   R FAIT+ +SILIS+  ++++   M   ++R +  +       
Sbjct: 455 VVGRLFREFAITLAVSILISLVVSLTLTPMMCARLLRAESEQKHGRFHQ 503



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 80/230 (34%), Gaps = 12/230 (5%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               +++  + + Q         + L  Q         V+  ++  + ++          
Sbjct: 258 DVARAVEGAEDTRQAAWAGDKPAILLNIQRQPGANVIDVVNRIQALLPQLRAALPATLDV 317

Query: 656 IVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    ++ +          + + ++ + M+ ++++R      L     + L +  T G 
Sbjct: 318 SVVSDRTQTIRDSVADVQFEMMLAVALVVMVTFVFLR-SLTATLIPSVVVPLSLVGTFGI 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             L G   N   + A+    G+ V+D +V+ + +    +      +      K  ++   
Sbjct: 377 MYLAGFSINNLTLMALTIATGFVVDDAIVMIENI---ARHIEEGETPLQAALKGASQIGF 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             +  + +    ++P+       G +   FAI +A  I+++   S+ +  
Sbjct: 434 TLISLTFSLIAVLIPLLFMTEVVGRLFREFAITLAVSILISLVVSLTLTP 483



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 90/252 (35%), Gaps = 6/252 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         V  S++  +  G         ++  +V + +      + +  +E +   
Sbjct: 770  QIHVPTSTGAQVPLSSVAHISEGKTVLAVNRLDQFPMVTVSFNLAPGASLSGAVEDIIAA 829

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
              EI   + ++          +  +   +  ++ + + M I + + ++ +   +  ++TL
Sbjct: 830  EAEIGLPTGVETRFQGAALAFQNSLSSTLWLILAAVVTMYIVLGVLYESYIHPITILSTL 889

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   L    + G E ++  +  ++ LIG    + +++ D            +S R  
Sbjct: 890  PSAGVGALLALLISGTELDMIGIIGIILLIGIVKKNAIMMIDFALD--AERKRGLSPRAA 947

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++        + T++AA    LP+ +    G  +     + M  G++++   ++F   
Sbjct: 948  IHEAALLRFRPILMTTLAALFGALPLMLSTGTGAELRQPLGLVMVGGLLLSQVLTLFTTP 1007

Query: 818  PILLFIYDWRAK 829
             I L       +
Sbjct: 1008 VIYLMFDRMSRR 1019


>gi|304317968|ref|YP_003853113.1| acriflavin resistance protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302779470|gb|ADL70029.1| acriflavin resistance protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1043

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/558 (11%), Positives = 167/558 (29%), Gaps = 40/558 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +   ++  +G +      L +  +D  P                         
Sbjct: 9   KRPVTAFMAVVLVFILGFVS-----LTKMNVDLLPDIKYPAV---------AVVTTYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + L+       S +   + +T++F      ++    V   +  
Sbjct: 55  SSEEIESLITDPIENQLAGLQNVQNISSSSQTNVSIVTINFNWGTNLDSAVTDVRDKINI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L        +V      + ++       +      + + ++I++   ++       
Sbjct: 115 VKNSLPDGASDPTIVKFDMSSMPVITYGITGSENQLLMKQVAEDVIQK---KLETVAGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +  Q+     P ++     +  +++      N +                   
Sbjct: 172 SVNISGGVDRQVRVLVSPEKMNGYGISFTQVTQALQSNNVNLPAGTVDY----------- 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G          + ++   + +I                ++    A V    
Sbjct: 221 ---------GSRELMVRTMGEFQSVDDIKNIPIANKQGSIIRLRDIADVEDATADVTSYS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +             +  +              L+                     S + 
Sbjct: 272 RINKSPGLVIQVQKASDANTVTVANNVKKELESLQKQLPKGMTLYKISDESEYINDSINT 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L +I++++ +      LV   SI +++I T  L+   G TL + S+ G+ 
Sbjct: 332 LISHGIIGALLAVIIIYLFLHSFSSTLVVATSIPISLISTFILMYFSGMTLNIMSLGGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG   D  I+V E I    ++  + F +  +G    + +I  S +T ++  + + F  
Sbjct: 392 MAIGRLEDDAIVVLENIHYHRQQGMNAFEAATIGAKEMFLSITASTLTTVVVFLPVIFVN 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G +    +  ++T+  ++L S+  A++IV  +   +++   +     + L + F   D  
Sbjct: 452 GISGVLFKELSLTITFALLSSLVCAMTIVPLLSSRLVKVSTVNIEKRSLLGKIFYPMDKA 511

Query: 539 AIQFMRARFWGVGISILF 556
                +     +  S+  
Sbjct: 512 YSTVEKKYGALLKWSLNH 529



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 71/216 (32%), Gaps = 10/216 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             V+             V + ++    ++    T+         I+  +      G+I +
Sbjct: 281 IQVQKASDANTVTVANNVKKELESLQKQLPKGMTLYKISDESEYINDSINTLISHGIIGA 340

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A++I       +   L   T++ + +  T       G+  N+ ++  +   IG   +D
Sbjct: 341 LLAVIIIYLFLHSFSSTLVVATSIPISLISTFILMYFSGMTLNIMSLGGLAMAIGRLEDD 400

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
            +VV + +          ++  +       E       +++   +  LP+       G +
Sbjct: 401 AIVVLENIH---YHRQQGMNAFEAATIGAKEMFLSITASTLTTVVVFLPVIFVNGISGVL 457

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               ++     I  A  SS+  A  I+  +     K
Sbjct: 458 FKELSLT----ITFALLSSLVCAMTIVPLLSSRLVK 489



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/197 (12%), Positives = 73/197 (37%), Gaps = 7/197 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E    +          +   V+  ++  ++ +        +     K  ++   +    +
Sbjct: 810  EDRTRIAYVTADIFGRSLGSVMNDIEASVSSMNLPEGYTVSFEGQNKDMQDSFAQLGQAL 869

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++S + + + +   F+        + ++ +  I    G   + G   ++ A   ++ ++G
Sbjct: 870  LLSIVLVFVVMAAEFESLIHPFTIMFSIPLCIIGIVFGLL-ISGWALSIPAFLGIIMVVG 928

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +V++ +++ D +    KL     +  D I ++    L   + T+ A  + +LP+A  G 
Sbjct: 929  IAVSNGILLVDYIN---KLRERGKNVTDAILEAGPRRLRPIIMTATATILGMLPIA-LGV 984

Query: 792  SVIGSFAIPMAFGIVVA 808
                    P+A   +  
Sbjct: 985  GSGSEIEAPLAVSAIGG 1001


>gi|269791648|ref|YP_003316552.1| acriflavin resistance protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269099283|gb|ACZ18270.1| acriflavin resistance protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 1027

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 65/551 (11%), Positives = 157/551 (28%), Gaps = 40/551 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R    +  L   +  +G+     N   +  L+  P A                  +   
Sbjct: 7   LRRPIAMGCLLIALSLLGI-----NAYRKMGLELMPKADVPYVT---------VVAIWPG 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    ++  S +        +  +    ++L F         A+ V   + 
Sbjct: 53  ASPRDIETDVAKKIEDAVSSVDGIKHIKSTCMENVAVVSLEFELGTDVNVAANDVREKID 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L    +K ++         I+      D       E       +  D+       
Sbjct: 113 PIVPDLPEGVEKPIIQKFDINASPIITMALVGD---MRLDELYDYADSRLKDRFSTIPGV 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +     +L    DP RL +   T+++++        +                  
Sbjct: 170 AEVRLTGGSKRELHVLLDPFRLAERGLTSSQVTRALAEGVRTIPSGRIKD---------- 219

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        + D ++ + +  +        R +      I    A     
Sbjct: 220 ----------GEDEWSVRFDGDYRSVQDLAMMPIAARNGARVYLRDVAQIRFDTAERRQA 269

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            KA  +    ++        L+         +           S  
Sbjct: 270 VFLDGRQAVGIRIVKKADANAVELVDRVMRTFESLKGELPGGMRLVWVTDEGTYIRSSVR 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +      L   +LF  +   +  LV   ++ L +I++L  + L+G TL   ++  +
Sbjct: 330 NTISSIVQGIVLTAGILFFFLYNLRSTLVVSVTMPLTIIMSLFFMQLMGYTLNTSTLLAL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ V ++++V ER+  + +++     +   G S     +  S  T ++  + +   
Sbjct: 390 GLSVGILVSNSLVVLERVLSKLKEHGDPKRAALEGTSEVALAVLASAGTNVVVLLPIGLM 449

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G       R FAIT      +S+F + ++   +  ++++      ++         +   
Sbjct: 450 GSMVGLFFRPFAITSLTVNAMSIFISFTLTPILSAYLLKVTSGGRLERLEERFNRWLDRL 509

Query: 538 IAIQFMRARFW 548
                   R  
Sbjct: 510 SDRYVGAVRHL 520



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 88/213 (41%), Gaps = 7/213 (3%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               P  +  +     + ++ +         +         ++  +  G++ VI++    L
Sbjct: 813  PGYPLGTAVEDVEDMVKRENLLPPGYTVKFRGDYERMADANQAFLEAGVLSVILTF-LTL 871

Query: 682  IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
              I   FKW   +  +TT+ L +        L     N+  +   + LIG  VN+ ++V 
Sbjct: 872  SAILESFKW--PVLILTTVPLGMVGVFWALWLTSTGMNIFVLLGAVMLIGIVVNNAILVV 929

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFA 798
            D+ R +++     +   +L+  ++ E+    +  ++AA + ++P+A+    G        
Sbjct: 930  DQFR-SLRAQRPGLDSAELMLMALKESFRPVLMVTLAAVLGMMPLALSRGMGSEFTTGIG 988

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            I  A G+ ++   ++F+   + +   +W+++  
Sbjct: 989  IASAGGVAMSGLLALFVIPLLYIVHLEWKSRRG 1021



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 78/234 (33%), Gaps = 11/234 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R   +         Q    +    V ++           +++ V +    +        
Sbjct: 253 LRDVAQIRFDTAERRQAVFLDGRQAVGIRIVKKADANAVELVDRVMRTFESLKGELPGGM 312

Query: 654 TEIVGPKISRELI---RKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLILDITKTLG 709
             +        +    R  I  ++   +    I  +  +     L    T+ L I  +L 
Sbjct: 313 RLVWVTDEGTYIRSSVRNTISSIVQGIVLTAGILFFFLYNLRSTLVVSVTMPLTIIMSLF 372

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  L G   N + + A+   +G  V++ +VV +R+   +K +      +    +  +E  
Sbjct: 373 FMQLMGYTLNTSTLLALGLSVGILVSNSLVVLERVLSKLKEHG---DPKRAALEGTSEVA 429

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              + ++    + +LP+ + G   G     FAI       ++   S F   PIL
Sbjct: 430 LAVLASAGTNVVVLLPIGLMGSMVGLFFRPFAITSLTVNAMSIFIS-FTLTPIL 482


>gi|163796452|ref|ZP_02190412.1| acriflavin resistance protein [alpha proteobacterium BAL199]
 gi|159178302|gb|EDP62846.1| acriflavin resistance protein [alpha proteobacterium BAL199]
          Length = 1018

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 87/603 (14%), Positives = 182/603 (30%), Gaps = 49/603 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    + L+ ++C IGL+        +  + RFP+                  + + + 
Sbjct: 9   RNPVPPIALFLVLCIIGLVS-----FDRLPITRFPNIDMPI-------------VTVTIA 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +       +   +    ++    +        +       IT+ F      +   + V  
Sbjct: 51  QPGAAPVELTSQVVKPVEDAVFGISGVRHVTSTATDSSTVITIEFELDTDTDRALNDVKD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + GV  +L     + ++       +SI+    +         E S  +       +   
Sbjct: 111 AVSGVREELPDAISEPIIKRLDVTGLSIMTYAVS--DPTRSIEELSYLVDDVLARDLQTV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           ++  +         ++  E +P RL  L  T + +S   +  N +  G    +     S 
Sbjct: 169 DAVGKVTRLGGSEREIKVELEPDRLLALGITASDISHQLLATNINLGGGRGTLAGQEFSI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V+    ++   L                         R         +    +  
Sbjct: 229 RALGSVDTVQALAATSLALP--------------------NGRTIRLDDLGTVIDGPSEA 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L    +           S     +      A        I L  + +       G
Sbjct: 269 RSFAMLNGQPVVSFGVFRATGKSDLDASDGVKRKLAEFTERYPDINL-SLVDDTTVYTDG 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S    T    A L +IV+F  +   +  ++   +I L++I T  ++  LG +L   S+
Sbjct: 328 NYSSAMETLYEGALLAVIVVFAFLRNWRATIITAVAIPLSIIPTFFVMDWLGFSLNTISL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            GI L  G+ VD  I+  E I    +  +  + + +   S    T+   + T +     +
Sbjct: 388 LGITLVTGILVDDAIVEIENIVRHIKMGRPAYEASEEAASEIGLTVIAISFTIVAVFAPV 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F G   G   + F +T+ +++L S+  A  I   M  + ++      +  +       +
Sbjct: 448 SFMGGIAGQYFKQFGLTVAVAVLFSLLVARLITPMMAAYFLKDAPEPDVKPDGPIMRSYM 507

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                    RA   G+G++I         L           +G     V       L   
Sbjct: 508 SVLTWTLDHRAMTLGIGLAIFAGSLFSATL-LPTEFVPRSDEGRSAFSVELPPGSTLDDT 566

Query: 595 RSN 597
           R+ 
Sbjct: 567 RAV 569



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +A+++       W   +     + L I  T       G   N  ++  +  + G  V
Sbjct: 339 GALLAVIVVFAFLRNWRATIITAVAIPLSIIPTFFVMDWLGFSLNTISLLGITLVTGILV 398

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--- 791
           +D +V  + +   ++         +  +++ +E     +  S        P++  GG   
Sbjct: 399 DDAIVEIENI---VRHIKMGRPAYEASEEAASEIGLTVIAISFTIVAVFAPVSFMGGIAG 455

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                F + +A  ++ +   +  I   +  +   
Sbjct: 456 QYFKQFGLTVAVAVLFSLLVARLITPMMAAYFLK 489



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 76/220 (34%), Gaps = 7/220 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           ++ +  +++    +       L+ +             +       +   E+     + +
Sbjct: 782 DRRYQTKVEANLREGGLLGPALDKIYALPITTDMPQGTEIKSSGDAETMAEVFSSFGLAM 841

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
               + + + + + F  +   +  + +L L +   +    L     +L  V   L L+G 
Sbjct: 842 GAGILLVYVVLVLLFSSFISPVTILLSLPLAVGGAIFALFLTNNAISLPVVIGFLMLMGI 901

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
              + +++ +   +     +  +     +  + ++     + T++A    ++P A+    
Sbjct: 902 VTKNAIMLVEFALE---AMSNGVERSAAMLDAAHKRAQPIIMTTVAMTAGMVPSALAFGT 958

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           GG      AI +  G++V+   S+     +   I   + K
Sbjct: 959 GGEFRSPMAIAVIGGLIVSTMLSLLFVPSLFSVIDASKVK 998


>gi|157157887|ref|YP_001463428.1| multidrug efflux system subunit MdtC [Escherichia coli E24377A]
 gi|193069273|ref|ZP_03050229.1| multidrug resistance protein MdtC [Escherichia coli E110019]
 gi|260856056|ref|YP_003229947.1| multidrug efflux system, subunit C [Escherichia coli O26:H11 str.
           11368]
 gi|260868785|ref|YP_003235187.1| multidrug efflux system, subunit C [Escherichia coli O111:H- str.
           11128]
 gi|300921720|ref|ZP_07137886.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 182-1]
 gi|301329920|ref|ZP_07222641.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 78-1]
 gi|167008978|sp|A7ZNP9|MDTC_ECO24 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|157079917|gb|ABV19625.1| multidrug resistance protein MdtC [Escherichia coli E24377A]
 gi|192957406|gb|EDV87853.1| multidrug resistance protein MdtC [Escherichia coli E110019]
 gi|257754705|dbj|BAI26207.1| multidrug efflux system, subunit C [Escherichia coli O26:H11 str.
           11368]
 gi|257765141|dbj|BAI36636.1| multidrug efflux system, subunit C [Escherichia coli O111:H- str.
           11128]
 gi|300421858|gb|EFK05169.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 182-1]
 gi|300844019|gb|EFK71779.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 78-1]
 gi|323152296|gb|EFZ38585.1| multidrug resistance protein mdtC [Escherichia coli EPECa14]
          Length = 1025

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I+IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIVISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  IV++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIVISLLVSL-TLTPMMCGWMLKASKPR 496



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|330880702|gb|EGH14851.1| multidrug RND efflux transporter, permease MdtB [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 747

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNELVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRNLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGGLRWVLRHQPLTLLAALATLALTVLLYIVVPKGFFPVQ 557



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495


>gi|150397575|ref|YP_001328042.1| acriflavin resistance protein [Sinorhizobium medicae WSM419]
 gi|150029090|gb|ABR61207.1| acriflavin resistance protein [Sinorhizobium medicae WSM419]
          Length = 1103

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 85/669 (12%), Positives = 197/669 (29%), Gaps = 42/669 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  +G             + RFP+                  +     
Sbjct: 9   RNPVAPILAFFVLVVLG-----WQSFNSLPITRFPNIDVPIV---------SIAVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    +   + F            V   +  
Sbjct: 55  APAELETQVTKEIEDAVAGVTGVDHIESTITDGISTTAVIFRMEVPTTQAVQDVKDAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L    ++ ++     +  +I     +   +     E S  +       I       
Sbjct: 115 IRSDLPTSIEEPIVSKVDVEGQAIQTFSVSSPGMTLE--ELSWFVDDTIKRAIQGQTGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E D  RL     + A ++      N                     
Sbjct: 173 RVDRYGGSDREVRVELDEDRLNSFGISAADVNAQLRRMNMD------------------- 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   + ++ G      T             +     G           I          R
Sbjct: 214 LGSGRGQVGGSEQAIRTLGDTRDVTALADTMIALPNGRFVRLSELGKVIDTYEEPKSFAR 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P +       +A+ +   ++               P     + + +V    G+   
Sbjct: 274 FNGQPGV--TFAVFRAKGASEVSVAETVAKTLDDIRAKHPDVSIEMVDDSVYFTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+ + +   +  L++  ++ L+ I T  ++ LLG +L L S   + 
Sbjct: 332 AIHTLIEGAVLAVIVVMLFLRNWRATLISAVALPLSAIPTFWVMELLGFSLNLVSFLAMT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +  +  T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIERHIRMGKSPYRAAIEAADEIGLAVIATTFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F +T+ +S+  S+  A  I   M  ++++       D +           +
Sbjct: 452 GIPGQYFIQFGLTVAVSVFFSLLVARLITPVMAAYLMKPSDASGHDDDEGFMMRQYTRLV 511

Query: 539 AIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                R   R+  +  +IL S+ S+  L        +  +   ++ +    P D  +  +
Sbjct: 512 RFTTKRWYTRYSTLLAAILLSVGSVIALLVFVPGSFLPPEDSSRVSLSIELPPDAMLADT 571

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +  + +I +        E  F++      GD   +   + ++ +K+   +    + +   
Sbjct: 572 DRTTTEIYNRIKDVEGVENVFVLGGASPKGDLELRRAAVTVLLRKLDHSLINKVVNDVIG 631

Query: 657 VGPKISREL 665
             P I   L
Sbjct: 632 RTPLIGEYL 640



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 80/252 (31%), Gaps = 8/252 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + +   R V LS +   +++ +      +            + +    V+    +  
Sbjct: 242 DTMIALPNGRFVRLSELGKVIDTYEEPKSFARFNGQPGVTFAVFRAKGASEVSVAETVAK 301

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGA 696
               I    P  +I+  +      +       I  +I  + +A+++ +     W   L +
Sbjct: 302 TLDDIRAKHPDVSIEMVD-DSVYFTYGNYEAAIHTLIEGAVLAVIVVMLFLRNWRATLIS 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L    T     L G   NL +  A+    G  V+D +V  + +    +      S
Sbjct: 361 AVALPLSAIPTFWVMELLGFSLNLVSFLAMTLATGILVDDAIVEIENI---ERHIRMGKS 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
                 ++ +E     + T+       +P++   G        F + +A  +  +   + 
Sbjct: 418 PYRAAIEAADEIGLAVIATTFTIIAVFVPVSFMPGIPGQYFIQFGLTVAVSVFFSLLVAR 477

Query: 814 FIAAPILLFIYD 825
            I   +  ++  
Sbjct: 478 LITPVMAAYLMK 489



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 61/156 (39%), Gaps = 7/156 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            E    ++  E+       +++  + +L+ + + FK        + +L L I        L
Sbjct: 862  ESGDAEVQAEMQESFGNAMLLGLMMVLVVLILLFKDVIQPFTILFSLPLAIGGVAAALIL 921

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++  +  +L L+G    + +++ D   + M      +     + ++  +     V
Sbjct: 922  TQNALSMPVLIGILMLMGIVTKNAILLVDFGIEMMH---HGMDRTLAMIEAGRKRARPIV 978

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
             TS+A    +LP A+    GGS     AI +  GI+
Sbjct: 979  MTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGII 1014


>gi|86748020|ref|YP_484516.1| acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
 gi|86571048|gb|ABD05605.1| Acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
          Length = 1060

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 192/683 (28%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    ++   ++  +G +      + +      P                   +     
Sbjct: 11  RHPLPSIVFSIILLALGWISFTKLAVTRLPSADIPVIS--------------VAVAQFGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ FA     +   + +   +  
Sbjct: 57  APAELEAQVTKTIEDGVSGVEGVRHIASSITDGLSVTTIQFALETNTDRALNDIKDAITR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  +  + L+       + I+              + S  +       +       
Sbjct: 117 VRSNLPQNVNEPLIQRVDVIGLPILTYAAISPGKTPE--QLSWFVDDVVKRALQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL+    T   +S      N    G    +     +     
Sbjct: 175 QVERIGGVEREILVSLDPDRLKAAGLTALDVSRRLRGTNVDLAGGRAEIGRNDQAIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +++G  ++                                  +   +A      
Sbjct: 235 GAKTLNDLAGTMISLP--------------------SGGEIRLDDLGTVTDTIADRRTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +       +++ + +  +  A                  + + +V    G+   
Sbjct: 275 RVNGEPVVALGIK-RSKGASDVVVAEAVQKRIEALKAQHSDVDLKLIDTSVDYTKGNYEA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  ++A  S+ L++      + +LG +L L S   I 
Sbjct: 334 AISTLFEGAILAVIVVFLFLRDLRATVIAAISLPLSIFPAFWAMDMLGFSLNLVSFLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A   I  + I        + 
Sbjct: 394 LSTGILVDDAIVEIENIVRHMRMGKSPYQAAIEAADEIGLAVIAISLTIIAIFAPASFMS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ + +  S+  A  I   +  + ++    +      + + +      
Sbjct: 454 GIAGQFFKQFGITVSVQVFFSLLAARFITPVLAAYFLKNVSHEEKPPGRVLQAYTRMVTW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV--VRS 596
           +++               SI SI LL    L      +  + + +     +  +      
Sbjct: 514 SVKHYYLTVLMGLGVFAASIWSIVLLPQGFLPAQDTARSVMAMELPPGTQIRTTEKTTER 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +  L+        F         +Q     S+      +  +K     + L+  ++ + 
Sbjct: 574 IVTLLRQRPEVRSVFVDGGRVPPGIQEVRRASLIINYTPKGDRKITQRDLELAISKDLDQ 633

Query: 657 VGPKISRELIRKGIVGVIISAIA 679
           +       L   G+  + +    
Sbjct: 634 IPDIRYWFLDENGLRAISLVVTG 656



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/249 (10%), Positives = 74/249 (29%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + +   + L  + +  +++       +        L   + +    V     ++   
Sbjct: 246 MISLPSGGEIRLDDLGTVTDTIADRRTFARVNGEPVVALGIKRSKGASDVVVAEAVQKRI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           + +        ++  +                    + +A+++           + A  +
Sbjct: 306 EALKAQHSDVDLKLIDTSVDYTKGNYEAAISTLFEGAILAVIVVFLFLRDLRATVIAAIS 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I        + G   NL +  A+    G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSIFPAFWAMDMLGFSLNLVSFLAITLSTGILVDDAIVEIENI---VRHMRMGKSPYQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     +  S+           + G  G     F I ++  +  +  ++ FI 
Sbjct: 423 AAIEAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARFIT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PVLAAYFLK 491



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 60/167 (35%), Gaps = 7/167 (4%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL       +    + +   + + F  +   +  + +L L I   +    + G +    
Sbjct: 839  NELSDGFATAISAGLMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIAALLVTGKQLTTP 898

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
                +L L+G    + +++ +   + ++           +  +  +     V T++A   
Sbjct: 899  VWIGILMLMGIVTKNAIMLVEFALEAIRE---GKPREAAMIDAGQKRARPIVMTTIAMVA 955

Query: 782  SVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             ++P A+    GG      A+ +  G++ +   S+     + + + D
Sbjct: 956  GMVPSALAFGAGGEFRSPMALAVIGGLIFSTVLSLIFVPAMFMMMDD 1002


>gi|312960657|ref|ZP_07775163.1| multidrug RND efflux transporter, permease protein [Pseudomonas
           fluorescens WH6]
 gi|311285183|gb|EFQ63758.1| multidrug RND efflux transporter, permease protein [Pseudomonas
           fluorescens WH6]
          Length = 1035

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 58/539 (10%), Positives = 149/539 (27%), Gaps = 38/539 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   I  +G +           +   P       +             L   
Sbjct: 9   RRPVATMLLSLAIMLLGGVS-----FNLLPVSPLPQIDFPVIV---------VSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S  Q   ++ L+F   R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSFGAIAGITTMSSSSSQGSTRVILAFDSDRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKINPSQAPIMV-LSLTSDVLQKGQLYDLASTILSQSLSQVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q       +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPKALDQYGVALDDVRNTIANANQRRPKGSLEDSERNWQIQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 I   +    +  
Sbjct: 234 QLEKAKD--------------------YEPLLIRYQNGAALRLSDVAKISDGVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + ++  +   T+         L+A         +          +   
Sbjct: 274 FFNNDSAVLLVINRQSGANIIETVRQIKAQLPALQAVLPSSVKLSLAMDRSPVITATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I  GLV++V+++ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVGLVILVVYLFLGNFRASLIPTLAVPVSLVGTFAVMYLYGFSLNNFSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIDEGVPPMKAAYLGAQEVGFTLLSMNVSLVAVFLSILFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
                  R F+IT+  +I++S+  ++++   +    ++      +         +    
Sbjct: 454 GIVTNLFREFSITLSAAIIVSLIVSLTLTPMLCARWLKPHVKDRMSGLQRWSQKINDRM 512



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 89/250 (35%), Gaps = 7/250 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       + LS V    + ++    S    +     LV  +    + +   R ++   
Sbjct: 245 LIRYQNGAALRLSDVAKISDGVEDRYNSGFFNNDSAVLLVINRQSGANIIETVRQIKAQL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
             +  ++P S   +  +    +    + +  + ++I+   +++ +++    +  +L    
Sbjct: 305 PALQAVLPSSVKLSLAMDRSPVITATLHEAEMTLLIAVGLVILVVYLFLGNFRASLIPTL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T     L+G   N  ++ A++   G  V+D +VV + +    +     +   
Sbjct: 365 AVPVSLVGTFAVMYLYGFSLNNFSLMALILATGLVVDDAIVVLENI---SRHIDEGVPPM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
                   E     +  +++     L +   GG V      F+I ++  I+V+   S+ +
Sbjct: 422 KAAYLGAQEVGFTLLSMNVSLVAVFLSILFMGGIVTNLFREFSITLSAAIIVSLIVSLTL 481

Query: 816 AAPILLFIYD 825
              +      
Sbjct: 482 TPMLCARWLK 491


>gi|90419831|ref|ZP_01227740.1| putative transporter, AcrB/AcrD/AcrF family [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90335872|gb|EAS49620.1| putative transporter, AcrB/AcrD/AcrF family [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 1161

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/518 (13%), Positives = 157/518 (30%), Gaps = 40/518 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ ++  +G+     +      + RFP+                  +     
Sbjct: 11  RNPVPPILLFFVLVALGI-----SSFISLPITRFPNIDVPVV---------AVTITESGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    +     F      +   + V   +  
Sbjct: 57  APSELETQVTKKVEDAIAGISGVKHVTSTITDGSSVTAAEFRLEIDTDRATNDVKDAVAK 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L +   + ++     +  SIV              + S  +    I  +       
Sbjct: 117 IRSDLPLTIDEPVIQRIEVENQSIVTYAAASPGKTPE--QLSWFVDDVVIRALQGLNGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++    DP RL  L  T  +++                         N  
Sbjct: 175 RVERMGGVEREIQVRLDPDRLAALGVTAGEVNRQLRST-------------------NVD 215

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   + E  G      T +             +   G +       + +          R
Sbjct: 216 LSGGRGEFGGQEQAIRTLSSADTVQGLAETRIYLRGGRQVRLAELGEVVDNWEKPRSFAR 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +   PV+  A    +++ + + T+      A    A + P       + +V    G+   
Sbjct: 276 LDGRPVV--AFSIYRSKGASDTTVADRAAEAVAKLAAANPDVTFSKIDDSVTYTYGNFES 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A  A L +IV+ + +   +   VA  ++ L  I T   + L+G +L L S+  I 
Sbjct: 334 AMETLAEGALLAVIVVLLFLRDWRATAVAAITLPLAAIPTFWAMDLMGFSLNLVSLLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I       +  + +           +    +T +     + F G
Sbjct: 394 LVTGILVDDAIVEIENIERHIGMGKKPYRAAMEAADEIGLAVIAITMTIIAVFSPVSFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
              G   + F +T+ +++  S+  A  I   +  +   
Sbjct: 454 GIAGQYFKQFGLTVAMAVFFSLLVARLITPMLAAYFFH 491



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 88/255 (34%), Gaps = 7/255 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +        SV   ++  +  G         ++  LV++           +  E +    
Sbjct: 845  LRVTTGTGASVPLDSVADIGFGQGPSTIDRYDRERLVKVGTSMAPGFEIGQGSEKIMSLP 904

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                    ++  E+   +I  E+       +    + +L+ + + F   F  L  + +L 
Sbjct: 905  AVKDLPPGVRIQEVGDAEIQGEVFAGFASAMSAGIMMVLVVLILLFGSVFLPLTILASLP 964

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L +   +G   +     ++  V  +L L+G    + +++ D   +        +   + I
Sbjct: 965  LSVGGVVGALLITHTAISMPVVIGILMLMGIVTKNSIMLVDFAVE---QEKHGMPQTEAI 1021

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +  +     + T++A    ++P A+    GG      AI +  G++V+   S+     
Sbjct: 1022 IDAGRKRARPIIMTTLAMAAGMVPAAMATGEGGEFRAPMAIAVIGGLLVSTVLSLIFIPS 1081

Query: 819  ILLFIYDWRAKNARI 833
            +   + D      R+
Sbjct: 1082 VYTLMDDLSHMVGRL 1096



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 74/249 (29%), Gaps = 6/249 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             ++ +   R V L+ +   +++ +      +            + +             
Sbjct: 244 ETRIYLRGGRQVRLAELGEVVDNWEKPRSFARLDGRPVVAFSIYRSKGASDTTVADRAAE 303

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K+    P  T    +                    + +A+++ +     W     A 
Sbjct: 304 AVAKLAAANPDVTFSKIDDSVTYTYGNFESAMETLAEGALLAVIVVLLFLRDWRATAVAA 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            TL L    T     L G   NL ++ A+  + G  V+D +V  + +     +      +
Sbjct: 364 ITLPLAAIPTFWAMDLMGFSLNLVSLLAITLVTGILVDDAIVEIENI--ERHIGMGKKPY 421

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
           R  ++ +    L     T M       P++  GG        F + +A  +  +   +  
Sbjct: 422 RAAMEAADEIGLAVIAIT-MTIIAVFSPVSFMGGIAGQYFKQFGLTVAMAVFFSLLVARL 480

Query: 815 IAAPILLFI 823
           I   +  + 
Sbjct: 481 ITPMLAAYF 489


>gi|319427257|gb|ADV55331.1| RND multidrug efflux system, inner membrane subunit, MexF
           [Shewanella putrefaciens 200]
          Length = 1058

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/504 (11%), Positives = 135/504 (26%), Gaps = 29/504 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFLITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + A +       N        G +    +D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGLSPADIIAAVREQNQQAAAGSLGAQPSGSADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I      A          +          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIIKVGQNAEVIRLKDVARVELGATSYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L           +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S+ G+
Sbjct: 340 AVVKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIAAGLSPMAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 GGGAVRGFAITMGLSILISMFTAI 504
            G   + +        + +  +AI
Sbjct: 460 SGLTGQFYKQFALTITISTFISAI 483



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 77/238 (32%), Gaps = 11/238 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            N+      D            +         +      +E +  +   I           
Sbjct: 812  NVSQSAGPDRVMHYNGFTTAEINGGPAPGVSTGQAQAAIEKILAETLPIGMTYEWTELTY 871

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                        G++   +  + + + +  +++     L  I  + + +   L    ++G
Sbjct: 872  QQILAGN----TGLLVFPLVILLVFMVLAAQYESLSLPLAIILIIPMTLLSALSGVLIYG 927

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + N+     ++ L+G +  + +++ +  ++        ++  + I ++    L   + T
Sbjct: 928  GDNNIFTQIGLIVLVGLATKNAILIVEFAKE---KQDHGMAPMEAILEAARLRLRPILMT 984

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            S+A  + V+PM      G  +  +  + +  G++      + +       +    +KN
Sbjct: 985  SIAFIMGVVPMVFSSGAGAEMRQAMGVAVFAGMIGVTVFGLILTPLFYYALAKRGSKN 1042



 Score = 42.8 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 81/228 (35%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L++     I      G     +    +   +       E ++ +I     +
Sbjct: 273 ATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTV 332

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + E V   +   ++   +V V+               W  ++  +  + + +  T 
Sbjct: 333 FVRGSIEAVVKTLLEAVLLVVLVVVLFLQT-----------WRASIIPLVAVPVSLVGTF 381

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K++ E 
Sbjct: 382 AFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAA---GLSPMAATQKAMKEV 438

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 439 TGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|88808460|ref|ZP_01123970.1| preprotein translocase subunit [Synechococcus sp. WH 7805]
 gi|88787448|gb|EAR18605.1| preprotein translocase subunit [Synechococcus sp. WH 7805]
          Length = 316

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/179 (31%), Positives = 101/179 (56%), Gaps = 5/179 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           Q+ + +GP +  +L+R  ++ ++++   + IYI IR+   FA  A+  L  DI    G F
Sbjct: 132 QSVDTIGPSLGVQLLRSSLISLLVAFTGIAIYITIRYDRRFAFLALVALAHDIVIVCGVF 191

Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A  G+    E +     A+LT+ GYSVND VVV+DR+R+  +     +     +D++++ 
Sbjct: 192 AWLGLITGLEVDSLFAVALLTIAGYSVNDTVVVFDRIRERQREDG-DLHLTVQVDRAVSA 250

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           TL R++YTS    + ++ + ++GGS +  FA+ +A G+VV + SSI +A  +L      
Sbjct: 251 TLTRTLYTSGTTLLPLIALILFGGSTLYWFAVALALGVVVGSWSSIALAPSLLSLWPSR 309


>gi|146293885|ref|YP_001184309.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Shewanella
           putrefaciens CN-32]
 gi|145565575|gb|ABP76510.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Shewanella putrefaciens CN-32]
          Length = 1058

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/504 (11%), Positives = 135/504 (26%), Gaps = 29/504 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFLITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + A +       N        G +    +D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGLSPADIIAAVREQNQQAAAGSLGAQPSGSADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I      A          +          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIIKVGQNAEVIRLKDVARVELGATSYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L           +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + LLG +L   S+ G+
Sbjct: 340 AVVKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLLGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIAAGLSPMAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 GGGAVRGFAITMGLSILISMFTAI 504
            G   + +        + +  +AI
Sbjct: 460 SGLTGQFYKQFALTITISTFISAI 483



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/238 (10%), Positives = 77/238 (32%), Gaps = 11/238 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            N+      D            +         +      +E +  +   I           
Sbjct: 812  NVSQSAGPDRVMHYNGFTTAEINGSPAPGVSTGQAQAAIEKILAETLPIGMTYEWTELTY 871

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                        G++   +  + + + +  +++     L  I  + + +   L    ++G
Sbjct: 872  QQILAGN----TGLLVFPLVILLVFMVLAAQYESLSLPLAIILIIPMTLLSALSGVLIYG 927

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + N+     ++ L+G +  + +++ +  ++        ++  + I ++    L   + T
Sbjct: 928  GDNNIFTQIGLIVLVGLATKNAILIVEFAKE---KQDHGMAPMEAILEAARLRLRPILMT 984

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            S+A  + V+PM      G  +  +  + +  G++      + +       +    +KN
Sbjct: 985  SIAFIMGVVPMVFSTGAGAEMRQAMGVAVFAGMIGVTVFGLILTPLFYYALAKRGSKN 1042



 Score = 42.8 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 81/228 (35%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L++     I      G     +    +   +       E ++ +I     +
Sbjct: 273 ATSYALRSLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTV 332

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + E V   +   ++   +V V+               W  ++  +  + + +  T 
Sbjct: 333 FVRGSIEAVVKTLLEAVLLVVLVVVLFLQT-----------WRASIIPLVAVPVSLVGTF 381

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F  L G   N  ++  ++  IG  V+D +VV + + +N+      +S      K++ E 
Sbjct: 382 AFMHLLGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIAA---GLSPMAATQKAMKEV 438

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            G  V T++      +P A      G     FA+ +     ++A +S+
Sbjct: 439 TGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISAINSL 486


>gi|167623132|ref|YP_001673426.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
 gi|167353154|gb|ABZ75767.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
          Length = 1035

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/580 (10%), Positives = 158/580 (27%), Gaps = 38/580 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVVAIVLSLLLCVFGAVS-----FSKLAVREMPDVESPVVT---------VMTTYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +          R   ++IT++F            V   +  
Sbjct: 55  SATIMESQITTTLEGELTGISGVDQIQSITRNGMSRITVTFLLGWDLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  + K  ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPDEAKDPIVSKDNGSGEPSVYVNLSSS--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  + +P  +     TT  +                          N  
Sbjct: 173 SVSISGGLYKVMYVQLNPELMAGRNITTRDIVNVLNKE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      +   TA            +        + +     N+           
Sbjct: 214 TPGGEVRNDTTVMAVRTARLYQSPEDFNYLVLRTAADGSQVYLKDVANVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +       +++         IV+  +      S   
Sbjct: 274 KSDGVVNISLGVVSQSDANPLEVAQDVHKEVELIQKFLPDGTKLIVDYDSTVFIDRSIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A+ A LV++VL++ +   +  L+   ++ +++I      ++ G ++ L ++  ++
Sbjct: 334 VFSTLAVTALLVILVLYIFIGQARATLIPAVTVPVSLISAFIAANVFGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGEPPILAAYNGTREVGFAVIATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S+L S   A+++   +   +++     +     +   F   +  
Sbjct: 454 GMVGLLFTEFSVMLAVSVLFSSLIALTLTPVLGSKLLKANVKPNRFNLWVESGFSKLEHA 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
               +         S L  I  I                 
Sbjct: 514 YRNMVAKAVTFRVASPLVIIACILGSAWLMQQVPAQLAPQ 553



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V +     +  + +F++       L  +     + +   + +    + I + +
Sbjct: 252 SQVYLKDVANVFIGAENENSTFKSDGVVNISLGVVSQSDANPLEVAQDVHKEVELIQKFL 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIYIWIRFKWYFALGAITTLILDIT 705
           P  T    +          I +    + + + + +L+      +    L    T+ + + 
Sbjct: 312 PDGTKLIVDYDSTVFIDRSIDEVFSTLAVTALLVILVLYIFIGQARATLIPAVTVPVSLI 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  +FG   NL  + A++  IG  V+D +VV + +                     
Sbjct: 372 SAFIAANVFGYSINLLTLMALILSIGLVVDDAIVVVENI---FHHIEKGEPPILAAYNGT 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     + T+    +  LP++   G V      F++ +A  ++ ++  ++ +   +   
Sbjct: 429 REVGFAVIATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALTLTPVLGSK 488

Query: 823 IYDWRAKNAR 832
           +     K  R
Sbjct: 489 LLKANVKPNR 498



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 48/146 (32%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        L G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLYLTGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    +     I  +    L   + T+    I  +P+ +    G     +    + FG+
Sbjct: 931  QLRDKGLEIEQAIIDASVRRLRPILMTAFTTLIGAIPLILSTGAGSESRIAVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A   ++ +   +   I        
Sbjct: 991  AFATFVTLLVIPAMYRLISGATKSPG 1016


>gi|148254950|ref|YP_001239535.1| putative component of multidrug efflux pump, mdtB-like protein
           [Bradyrhizobium sp. BTAi1]
 gi|146407123|gb|ABQ35629.1| Putative component of multidrug efflux pump, mdtB-like protein
           [Bradyrhizobium sp. BTAi1]
          Length = 1048

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 75/599 (12%), Positives = 165/599 (27%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L + I  IGL+       P   +   P       I +  +L GGS       
Sbjct: 12  KYPIGTSLLMAGILFIGLVA-----YPLLPVAPLPQVDFPT-IQVTANLPGGS------- 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       IT+ F  +R  +  A+ V   +  
Sbjct: 59  -PETMATSVAQPLERQFAQIPGIAQMTSTSYLGTAAITIQFDLNRNIDGAANDVQGAINA 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + +L  +              S +L   +           S  +      QI       
Sbjct: 118 ASGQLPKNLPSPPTYRKVNPADSPILL-LSATSETLPLTTVSDAVDAGLAQQISQISGVA 176

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q +   +    +  + DP++L     +   +                             
Sbjct: 177 QVIIGGQQKPSIRIQIDPAKLVAKGLSLEDVRSQIA--------------------ITTV 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN      K   D+                             
Sbjct: 217 DAPKGNIDGERRAYTIYANDQLTDSKDWNDVIIAYRNGGPLRIRDIGQAVSAAEDAKQAA 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   +   +   T++    L   L A   P     V          +   
Sbjct: 277 WANGQRGVFLVIFKQPGANVIETVDRIKGLLPRLVAAIPPAIKIDVISDRTTTIRAAVED 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ L ++   A++  +G TL   S+  + 
Sbjct: 337 VQFTLILTIFLVVMVIFIFLRSFWATVIPTITVPLALLGACAMMWGVGYTLDNLSLMALT 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I     + ++   +   G      TI   +I+ +   + L   G
Sbjct: 397 IAVGFVVDDAIVMLENISRYVEEGETPMAAAYKGAKEIGFTIVSISISLVAVLIPLLLMG 456

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FA+ + ++I +SMF ++++   M    +R +                   +
Sbjct: 457 GIIGRLFREFAVVLAMTIFVSMFVSLTLTPMMASRFLRNEHAAQHGKFYQWSEAAFDAML 516

Query: 539 AIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                         +   +    ++     LF          +    +   +    D+S
Sbjct: 517 RAYEKGLDLALRWRFATLMVFFATLGLSVYLFILIPKGFFPQQDVGLITATSEASQDIS 575



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 92/261 (35%), Gaps = 12/261 (4%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +T   N  +         ++A R      +R   +++   + + Q         V L   
Sbjct: 230 YTIYANDQLTDSKDWNDVIIAYRNGGPLRIRDIGQAVSAAEDAKQAAWANGQRGVFLVIF 289

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIA 679
                     ++ +K  +  +V          V    +  +       +  + + I  + 
Sbjct: 290 KQPGANVIETVDRIKGLLPRLVAAIPPAIKIDVISDRTTTIRAAVEDVQFTLILTIFLVV 349

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           M+I+I++R  ++  +    T+ L +          G   +  ++ A+   +G+ V+D +V
Sbjct: 350 MVIFIFLR-SFWATVIPTITVPLALLGACAMMWGVGYTLDNLSLMALTIAVGFVVDDAIV 408

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           + + +    +      +      K   E     V  S++    ++P+ + GG +      
Sbjct: 409 MLENI---SRYVEEGETPMAAAYKGAKEIGFTIVSISISLVAVLIPLLLMGGIIGRLFRE 465

Query: 797 FAIPMAFGIVVAASSSIFIAA 817
           FA+ +A  I V+   S+ +  
Sbjct: 466 FAVVLAMTIFVSMFVSLTLTP 486



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V +    D   + +                  +   + + +     VA  +  + V++ +
Sbjct: 774  VKSPTTGDQVPLSTFASWTTAPVRPLSISHQGQFPSITISFNLAQGVALGQATDAVQRAM 833

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             E+   ST+ ++     +  ++ +    + ++ + + + + + I ++ +   +  ++TL 
Sbjct: 834  VELGAPSTLNSSFQGTAQAFQQSLSTVPLLILAALVVVYLILGILYESYIHPITILSTLP 893

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L     FG +F+L A+  V+ LIG    + +++ D            +     I
Sbjct: 894  SAGVGALAILMAFGYDFSLIALIGVILLIGIVKKNGIMMVD--FAIAAERDQHLPPEQSI 951

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++        + T+MAA +  +P+ +    G  +       M  G++V+   ++F    
Sbjct: 952  RQAALLRFRPIMMTTMAALLGGVPLMLGNGTGSEIRQPLGYAMVGGLIVSQMLTLFTTPV 1011

Query: 819  ILLFIYD 825
            + L++  
Sbjct: 1012 VYLYLDK 1018


>gi|33866651|ref|NP_898210.1| RND family multidrug efflux transporter [Synechococcus sp. WH 8102]
 gi|33633429|emb|CAE08634.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 8102]
          Length = 1036

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/512 (13%), Positives = 150/512 (29%), Gaps = 30/512 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+   +I   GL+      L    L+  P   P   +S+G             
Sbjct: 9   LRRPILTVVCSLLILLAGLVA-----LTGLGLEDLPQLAPTR-VSVG--------ATFPA 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++  + L+       + RQ    I+L F++    E  A KV   + 
Sbjct: 55  ASPEVVEQSVTAVLEQQLNGLEGLESISSNSRQGGASISLRFSEG-DPELNAIKVQNEVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L     +  L      +  +++   +           +  + +   + +  +   
Sbjct: 114 LATRRLPQAVSRQGLRVRRSSDDLLMILGFSHPPDQYVPTFLAGWLDQSLREALFSTPGI 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                     +      DP RL Q   T + +S      N        G     D     
Sbjct: 174 GDVRVFGSSNLAFRLWLDPDRLEQASLTISDVSRALAEQNVLAAIGSLGASPAPDGQ--- 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L+   V+  G  L               + +   + G     +          +     
Sbjct: 231 -LISMPVDAEGRLLTQKDF--------ENLILRRLDNGGLLRLKDVGRVELGQRSYGSQA 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +              L     P     +          +  
Sbjct: 282 MNLDGQRSVAVGLYQRDGANALEVSRAVKAELKRLEPSFPPGIETSMIVDVADNVQANLD 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LVL+VL + +   +  L+   ++ + ++ +L L+ L G+ L    + G+
Sbjct: 342 RTIATLRDAVLLVLVVLVLFLGRWRLALIPGLAVPVALVGSLVLVKLSGSNLNSLILFGM 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           V+  G+ VD  I+V+E I     +  +   + +   +     +  +++      V +   
Sbjct: 402 VMATGIVVDDAIVVSEDIAGRIERGDAPKAAAEDAMAELAGAVVATSLVLAAVFVPVLLI 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRA 509
               G   +  A+ +  +IL S   A+S    
Sbjct: 462 PGSVGRLYQPIALAISGAILFSTLNALSFTPM 493



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 59/142 (41%), Gaps = 6/142 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +   L    L G+  ++     +L L+  +  + +++ +      
Sbjct: 896  SFVDPLIILLTVPIALMGALIGLKLRGLPLDVYGQMGLLVLVSLAAKNGILIVEFAN--- 952

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +     ++ R+ I  +    +   + T++ +    LP+ +    G +   S    +  G+
Sbjct: 953  QRLEAGLALREAILGAAVNRMRPILLTAVTSLAGFLPLLLAQGSGSASRISIGTVVFSGL 1012

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
            +V++  S+F+   + L +  WR
Sbjct: 1013 LVSSWLSLFVVPTVYLLLKRWR 1034



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
              +W  AL     + + +  +L    L G   N   +  ++   G  V+D +VV + + 
Sbjct: 361 FLGRWRLALIPGLAVPVALVGSLVLVKLSGSNLNSLILFGMVMATGIVVDDAIVVSEDI- 419

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
                     + +   + ++ E  G  V TS+      +P+ +  GSV       A+ ++
Sbjct: 420 --AGRIERGDAPKAAAEDAMAELAGAVVATSLVLAAVFVPVLLIPGSVGRLYQPIALAIS 477

Query: 803 FGIVVAASSSIFIAA 817
             I+ +  +++    
Sbjct: 478 GAILFSTLNALSFTP 492


>gi|226944954|ref|YP_002800027.1| AcrB/AcrD/AcrF family acriflavin resistance protein [Azotobacter
           vinelandii DJ]
 gi|226719881|gb|ACO79052.1| acriflavin resistance protein, AcrB/AcrD/AcrF family [Azotobacter
           vinelandii DJ]
          Length = 1031

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/583 (11%), Positives = 163/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   GL+           +   P         L L              
Sbjct: 10  RPVATTLIMVAIFLCGLIA-----YRLLPVSALPEVDYPTIRVLTL---------YPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +     + ITL F+     E     V   +   
Sbjct: 56  PEVMTSAVTAPLERQFGQMPGLNQMTSTSSGGASVITLRFSLDVNLEVAEQSVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + V++   +        E +  +  +   ++        
Sbjct: 116 SNLLPDDLPTPPVYNKVNPADTPVMT-LAVTSATMPLPEINDLVDTRMAQKLAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + DP  L       + +       N ++    F              
Sbjct: 175 VSLAGGQRPAVRIKVDPQALANYGLNLSDVRSLITASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+     ++    +            I            
Sbjct: 224 ---------TRVSQLDANDQLKSADEYRNLILAHLNGATLRLKDVAQIADGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +E    L   + A        I           +    
Sbjct: 275 ANRNAAVLVNIQRQPGANVIEVVERVQALLPQITATLPASLEVIPLTDRTQTIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V F+ +      ++   ++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QFELLLAVGLVVLVTFVFLRRLSATVIPSIAVPLSLIGTFGVMYLAGFSINNLTLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  +   +   G  +   T+     + +   + L F   
Sbjct: 395 AAGFVVDDAIVMLENIARHLEEGATPLEAALKGAQQIGFTLISLTFSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ +SILIS+  ++++   M    ++ +              +  + + 
Sbjct: 455 VVGRLFREFAITLSVSILISLLVSLTLTPMMCALFLKQEGPPEHQGRFYRASGVWIEVLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            ++  A  W +   +L  + ++  L    + Y    KG   + 
Sbjct: 515 ARYDAALHWVLRHQVLTLLIAVATLGLTVVLYLAVPKGFFPVQ 557



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 54/147 (36%), Gaps = 7/147 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
               +    +     + L +  T G   L G   N   + A+    G+ V+D +V+ + +
Sbjct: 351 VFLRRLSATVIPSIAVPLSLIGTFGVMYLAGFSINNLTLMALTVAAGFVVDDAIVMLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +   K   +     +  + +    ++P+       G +   FAI +
Sbjct: 411 ---ARHLEEGATPLEAALKGAQQIGFTLISLTFSLIAVLIPLLFMADVVGRLFREFAITL 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRA 828
           +  I+++   S+    P++  ++  + 
Sbjct: 468 SVSILISLLVSL-TLTPMMCALFLKQE 493


>gi|160876420|ref|YP_001555736.1| acriflavin resistance protein [Shewanella baltica OS195]
 gi|160861942|gb|ABX50476.1| acriflavin resistance protein [Shewanella baltica OS195]
 gi|315268610|gb|ADT95463.1| acriflavin resistance protein [Shewanella baltica OS678]
          Length = 1047

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/537 (10%), Positives = 153/537 (28%), Gaps = 38/537 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGIVS-----FSKLSIREMPDVESPVVT---------ISTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SAAIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D K  ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPEDAKDPVVSKDNGSGEPSVYVNLSSS--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   ++      N    G                
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDITNALRKENIETPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 217 ---GQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNISLGIIAQSDANPLLVAKEVHKEVDRVQDFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++LG ++ L ++  ++
Sbjct: 334 VYSTLYVTGALVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANMLGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           G        F++ + +S+L S   A+++   +   +++     +     + R F   
Sbjct: 454 GMVGLLFTEFSVMLAVSVLFSSLVALTLTPVLSSKLLKANVKPNRFNRWVDRGFARM 510



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 88/284 (30%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L            V + V K++  +        + +V    +  + R        +
Sbjct: 279 VNISLGIIAQSDANPLLVAKEVHKEVDRVQDFLPEGTSLVVDFDSTVFIDRSINEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        + G   NL  + A++  IG
Sbjct: 339 YVTGALVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAANMLGYSINLLTLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVLFSSLVALTLTPVLSSKLLKANVKPNR 498



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 699  TLILDITKTLGFFA-LFGIEFNLTAV-----AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L++  T  +G F    G+      +       ++ LIG    + +++ +      +L  
Sbjct: 878  PLVVMFTVPMGVFGGFLGLLLTSQGINIYSQIGMIMLIGMVTKNGILIVEFAN---QLRD 934

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                    I  + +  L   + T+    +  +P+      G     +    + FG+  A 
Sbjct: 935  RGFELDKAIIDASSRRLRPILMTAFTTLVGAVPLIFSTGAGSESRIAVGTVVFFGMAFAT 994

Query: 810  SSSIFIAAPILLFI 823
              ++ +   +   I
Sbjct: 995  FVTLLVIPAMYRLI 1008


>gi|300870881|ref|YP_003785752.1| putative acriflavin resistance protein [Brachyspira pilosicoli
           95/1000]
 gi|300688580|gb|ADK31251.1| putative acriflavin resistance protein [Brachyspira pilosicoli
           95/1000]
          Length = 1046

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 77/598 (12%), Positives = 179/598 (29%), Gaps = 52/598 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEV 60
           +    + +    +  +G++      L +  +D  P   +P   I    D  G        
Sbjct: 10  KRPVSVFMGIVAVVILGVVS-----LSRLPVDFLPDMELPFISIRTTYDNAG-------- 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   S +        +  +  + + + F       +    +   + 
Sbjct: 57  --PEEVEKSVSRLIESAVSSVNNIKEVSSTSEEEDSNVFIEFNWGSDLASATADIREAID 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  D +   +   +   I ++                   +  Q +  I      
Sbjct: 115 RIRKSLPDDAESPAVYKFSTDNIPVMEISFYGTDN---LSALYNLVDNQILTSIEQVGGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   +  Q+  + D +RL+        +     + N +  G        + +    
Sbjct: 172 AMAEIRGGLKSQIKVDVDMNRLQAYGLDINSIVSTLAMENQNISGGETYEGVYKYTLRTT 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              +   +I                      +   +             + +      D 
Sbjct: 232 GEFKTVDDIG-------------------NVVVALKDNNTPIRLRELATVYEGYDEDGDV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + ++  +     +        L           V   +      +  
Sbjct: 273 IKVNGTPAVNVSINKESGANTVAVSDAIKKRLDSL--NLPGDIKYEVLFNSADNVNNAIK 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T        +I+L + +   +  L+   SI +++I+T  L+   G TL + S++G+
Sbjct: 331 GVLDTAWQGGLFAVIILMIYLWNVRTVLIIAISIPMSIIVTFTLMYFFGTTLNIISLSGL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
           VLGIG+ VD++I+V E I          + S   G S     I  S +T +   +   F 
Sbjct: 391 VLGIGMMVDNSIVVLENIFYYRNNGYGKYSSAIDGTSTVALAISASTLTTIAVFLPFLFV 450

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R   IT+ +S++ S+  A++IV  +   ++  KK K  +   +         
Sbjct: 451 EGQTGQMFRDLCITVTVSMIASLAVALTIVPMLGARLVTTKKSKFFNRFEVFFDKHFHSK 510

Query: 538 IAIQF---------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           +   +          + R     IS++F++  + L+F     +    +G +   +   
Sbjct: 511 VNYVYEKILTYSVNHKNRVLIPVISVVFAVIIVGLIFIGKEGFPQSDEGQLMATIQMP 568



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 80/259 (30%), Gaps = 6/259 (2%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + V          +R      +  D             V +            V 
Sbjct: 238 DDIGNVVVALKDNNTPIRLRELATVYEGYDEDGDVIKVNGTPAVNVSINKESGANTVAVS 297

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV--GVIISAIAMLIYIWIRFKWYFA 693
           + +KK++  +     I+   +     +     KG++         A++I +   +     
Sbjct: 298 DAIKKRLDSLNLPGDIKYEVLFNSADNVNNAIKGVLDTAWQGGLFAVIILMIYLWNVRTV 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    ++ + I  T      FG   N+ +++ ++  IG  V++ +VV + +         
Sbjct: 358 LIIAISIPMSIIVTFTLMYFFGTTLNIISLSGLVLGIGMMVDNSIVVLENIFYYRNNGY- 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
              +   ID +    L  S  T +      LP     G     F   +   + V+  +S+
Sbjct: 417 -GKYSSAIDGTSTVALAISAST-LTTIAVFLPFLFVEGQTGQMFR-DLCITVTVSMIASL 473

Query: 814 FIAAPILLFIYDWRAKNAR 832
            +A  I+  +        +
Sbjct: 474 AVALTIVPMLGARLVTTKK 492



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 6/151 (3%)

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +   +  +F+ +         +      +L    + G   ++ +   V+ LIG  VN+ +
Sbjct: 869  VYAIMASQFESYIAPFVIALAIPFGFAGSLLLLLITGQTLSVYSGIGVIVLIGIVVNNGI 928

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            V+ D M  N  ++   I+       +    L   + TS+   + +LPMA+    G  +  
Sbjct: 929  VLIDYM--NQLMHEKKINGDAAALIAGPRRLRPVLMTSLTTILGLLPMALSNGEGNEMYQ 986

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              ++ +  G+ V+   ++ I   +   I + 
Sbjct: 987  PLSLAVLGGLSVSTLFTLVIVPTVYAAIRNR 1017


>gi|282857443|ref|ZP_06266676.1| protein-export membrane protein SecD [Pyramidobacter piscolens
           W5455]
 gi|282584728|gb|EFB90063.1| protein-export membrane protein SecD [Pyramidobacter piscolens
           W5455]
          Length = 467

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 153/521 (29%), Positives = 243/521 (46%), Gaps = 62/521 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R + W +I  + +  +  ++ L                   +++LGLDLRGG+H+VL+ 
Sbjct: 2   LRKDRWRLIFMAAVIAVSAIVVLRG-----------------KVNLGLDLRGGAHIVLQA 44

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V                                          + +   +   + 
Sbjct: 45  SGTKDVPLTPDSL-----------------------------------DRLRTVLEKRVN 69

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI-EQSMEIIRQRIDQIGISES 179
                      +  L       + + L      Q     I   ++   R+ I  +  +  
Sbjct: 70  QY------GLTEPTLQKQGVDRMIVDLPGVEDPQAALRLIGSTALLEFREVIQTLYSAAP 123

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
              +                 R       T            +K       + +   DG 
Sbjct: 124 LPPQAERKNYDSDEEFNAAVKRWNDY--RTQLEESQAKAMEQAKDFKGEEGQIVAGDDGG 181

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +  +  ++G  L+ AT+ FD    +P V + F+  G+  F + T   +G+ LA+VLD
Sbjct: 182 SIYLLGRPMLTGNELSNATSGFDQLG-RPDVSLEFNSKGSELFEKATEATVGRQLAMVLD 240

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G V++AP +N+ I  GKAQI+G+F++E A  LA MLRAG+LP+ ++I+E R+VG  LGSD
Sbjct: 241 GSVISAPRVNERISGGKAQITGHFSVEEAKGLAVMLRAGALPVNVSILENRSVGPSLGSD 300

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           SI  G  A + GL  + LFM++ Y  WG+ AD S+   +++  ALL    ATLTLP IAG
Sbjct: 301 SINAGAYAGMIGLAAVFLFMLLYYRLWGVTADLSLCTTLLVLFALLMAFKATLTLPGIAG 360

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I+L IG+AVDSNIL+ ERIREE R  ++   +L  GFS A +TI DSNIT +IA  VL++
Sbjct: 361 IILTIGMAVDSNILIFERIREETRAGKTPNAALTSGFSNALTTILDSNITTVIAAAVLYY 420

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +G G +RGFA+T+ L I+ S+F+A+ + R ++  ++ Y   
Sbjct: 421 YGSGPLRGFAMTLTLGIIASLFSALVVNRVLLQLMVNYGSK 461



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 77/174 (44%), Gaps = 4/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I  G    +I   A+ +++ + ++  + + A  +L   +         F 
Sbjct: 292 SVGPSLGSDSINAGAYAGMIGLAAVFLFMLLYYRL-WGVTADLSLCTTLLVLFALLMAFK 350

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+  +++++R+R+  +      +    +    +  L   + +
Sbjct: 351 ATLTLPGIAGIILTIGMAVDSNILIFERIREETRA---GKTPNAALTSGFSNALTTILDS 407

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++   I+   +  +G   +  FA+ +  GI+ +  S++ +   +L  + ++ +K
Sbjct: 408 NITTVIAAAVLYYYGSGPLRGFAMTLTLGIIASLFSALVVNRVLLQLMVNYGSK 461


>gi|229590213|ref|YP_002872332.1| multidrug efflux system transmembrane protein [Pseudomonas
           fluorescens SBW25]
 gi|229362079|emb|CAY48981.1| multidrug efflux system transmembrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 1033

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 56/551 (10%), Positives = 147/551 (26%), Gaps = 38/551 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGIIS-----YRLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + +TL F      +    +V   +   
Sbjct: 56  PDVMTSAVTAPLERQFGQMPGLTQMASTSSGGASVLTLRFNLDINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPKDLPAPPVYNKVNPADTPVLT-LAITSNTMLLPKLNDLVDTRMAQKIAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANGLNLSDVRTLIAASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN    + +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLVSPQQYAELILAYNNGAPLRLKDVAQIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +           V          S    
Sbjct: 275 ANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIALVVMVTFLFLRRVSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRYIEEGETPLAAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +                 D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKIEEQSRFYKASGAWIDWLI 514

Query: 540 IQFMRARFWGV 550
            ++     W +
Sbjct: 515 ARYGSMLQWVL 525



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 67/161 (41%), Gaps = 9/161 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+ ++++R +    +     + L +  T G   L G   N   + A+    G+
Sbjct: 340 IAIALVVMVTFLFLR-RVSATIIPSIAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRYIEEGETPLAAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.8 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +  +  I ++        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNQGLDPQTAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      +  +
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLGRRWRK 1023


>gi|170023572|ref|YP_001720077.1| multidrug efflux system subunit MdtC [Yersinia pseudotuberculosis
           YPIII]
 gi|186896223|ref|YP_001873335.1| multidrug efflux system subunit MdtC [Yersinia pseudotuberculosis
           PB1/+]
 gi|226700786|sp|B2K9M1|MDTC_YERPB RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|226700788|sp|B1JSD3|MDTC_YERPY RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|169750106|gb|ACA67624.1| acriflavin resistance protein [Yersinia pseudotuberculosis YPIII]
 gi|186699249|gb|ACC89878.1| acriflavin resistance protein [Yersinia pseudotuberculosis PB1/+]
          Length = 1024

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/618 (11%), Positives = 157/618 (25%), Gaps = 33/618 (5%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +             +   + + +   +    +     +    
Sbjct: 28  GFSLLPVSPLPQVDYPVIM---------VSASMPGADPETMASSVATPLERALGRIAGVN 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +      +I L F  +R     A  V   L    S L                 + 
Sbjct: 79  EMTSTSSLGSTRIILQFDLNRDINGAARDVQAALNAAQSLLPSGMPSRPTYRKMNPSDAP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++    +        +       +   +I  +E           L  +  E +PS L   
Sbjct: 139 IMI-MTLTSDTFSQGQLYDYASTKLAQKIAQTEGVSDVTVGGSSLPAVRVELNPSALFNQ 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +       N  +                   ++                     
Sbjct: 198 GVSLDAVRQAISAANVRRPQGSVDAAETHWQVQANDEIKTA------------------- 238

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                N+   +  V +  +         + S +   +   T+
Sbjct: 239 -EGYRPLIVHYNNGSPVRLQDVANVIDSVQDVRNAGMSAGQPAVLLVISREPGANIIATV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        LRA         + +        S    + +  I   LV++V+F+ +  G+
Sbjct: 298 DRIRAELPALRASIPASIQLNIAQDRSPTIRASLDEVERSLVIAVALVILVVFIFLRSGR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ +++I T A + L G +L   S+  + +  G  VD  I+V E I       
Sbjct: 358 ATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFT 502
                +   G      T+   +I+ +   + L    G      R FA+T+ ++I IS+  
Sbjct: 418 VKPMVAALRGVREVGFTVLSMSISLVAVFIPLLLMAGLPGRLFREFAVTLSVAIGISLVI 477

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           ++++   M  +++R                L+                   ++  + S  
Sbjct: 478 SLTLTPMMCAWLLRSHPKGQQQRIRGFGKVLLAIQQGYGRSLNWALSHTRWVMVVLLSTI 537

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            L               Q        +      S     Q      Q    +        
Sbjct: 538 ALNVWLYISIPKTFFPEQDTGRMMGFIQADQSISFQSMQQKLKDFMQIVGADPAVDSVTG 597

Query: 623 YQPGDSVAQTRVLEMVKK 640
           +  G       +   +K 
Sbjct: 598 FTGGSRTNSGSMFISLKP 615



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 91/253 (35%), Gaps = 7/253 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V + ++S+Q    +  +       LV  +    + +A    +     
Sbjct: 246 VHYNNGSPVRLQDVANVIDSVQDVRNAGMSAGQPAVLLVISREPGANIIATVDRIRAELP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S   N         R  + +    ++I+   +++ ++I  +     L     
Sbjct: 306 ALRASIPASIQLNIAQDRSPTIRASLDEVERSLVIAVALVILVVFIFLRSGRATLIPAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +    
Sbjct: 366 VPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPMV 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ + 
Sbjct: 423 AALRGVREVGFTVLSMSISLVAVFIPLLLMAGLPGRLFREFAVTLSVAIGISLVISLTLT 482

Query: 817 APILLFIYDWRAK 829
             +  ++     K
Sbjct: 483 PMMCAWLLRSHPK 495



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     V++ +TE+   ST++       ++ +E ++  +  ++ +   
Sbjct: 803  TISFNLPDGGSLSEATAAVERAMTELGVPSTVRGAFAGTAQVFQETLKSQLWLIMAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     IS R+ I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALDAQRNGN--ISAREAIFQASLLRFRPIIMTTLAALFGALPLVLSSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+VV+   +++    I L+    R + ++
Sbjct: 981  PLGITIVGGLVVSQLLTLYTTPVIYLYFDRLRNRFSK 1017


>gi|126657739|ref|ZP_01728893.1| protein export protein SecD [Cyanothece sp. CCY0110]
 gi|126620956|gb|EAZ91671.1| protein export protein SecD [Cyanothece sp. CCY0110]
          Length = 470

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 143/516 (27%), Positives = 217/516 (42%), Gaps = 78/516 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+    L+     +    + +                 +    + LGLDLRGG+ L +++
Sbjct: 1   MKQRRLLIGFIIALVIGAIAL-----------------LNTIPLQLGLDLRGGAQLTIQL 43

Query: 61  ----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKV 115
               D        L+     L++ +   G+    ++   Q+KI +        E     +
Sbjct: 44  QPTEDVQTISEEDLEAAKTVLQNRVDGLGVAEPIVQTLGQDKIVVQLPGVTDPEQAERVL 103

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    +     +  L             +     +    A++Q      +      
Sbjct: 104 GGTAQLEFRQQRQGTEGQLQAE---------FTIRQQKEAELEALKQGEPTSEEEQQIAE 154

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
           ++E          I        D      L G                +G  + V    D
Sbjct: 155 LTE---------SIEESNQALLDLFESVGLSGKNLD-----NARYGPTQGTEWEVIIDFD 200

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           ++G Q   E    I+G   +      D     PVV   F   G                 
Sbjct: 201 NEGGQKFAELTKNIAGTGRSIGIFLDDVLISAPVVGPQFAAAG----------------- 243

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                           I  G A I+GNFT ETA  LA  LR GSLP  + +VE R VGA 
Sbjct: 244 ----------------ITGGSAVITGNFTAETANELAVQLRGGSLPFPVEVVENRTVGAT 287

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI +   A VAGL+L+++FM V Y   G++AD ++ +  +LTLA  SL+G TLTLP
Sbjct: 288 LGRDSIRRSIYAAVAGLILVLIFMAVYYRLPGVLADLALAIYTLLTLACYSLIGVTLTLP 347

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAG +L IG+AVD+N+L+ ER REE R  ++++  ++ GF RA+S+I DSN+T LIA  
Sbjct: 348 GIAGFILSIGMAVDANVLIFERTREELRSGKTLYSGVESGFYRAFSSIIDSNVTTLIACG 407

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            LF  G G V+GFA+T+ + +L+SMFTA++  R  +
Sbjct: 408 ALFGLGSGLVKGFALTLAIGVLVSMFTALTCTRTFL 443



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 92/225 (40%), Gaps = 4/225 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+ + I                      G+  A+T     V+ +   +     +     V
Sbjct: 225 LDDVLISAPVVGPQFAAAGITGGSAVITGNFTAETANELAVQLRGGSLPFPVEVVENRTV 284

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ IR+ I   +   I +LI++ + ++    + A   L +    TL  ++L G+ 
Sbjct: 285 GATLGRDSIRRSIYAAVAGLILVLIFMAVYYRLP-GVLADLALAIYTLLTLACYSLIGVT 343

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++   +  +    ++          + +++
Sbjct: 344 LTLPGIAGFILSIGMAVDANVLIFERTREELR---SGKTLYSGVESGFYRAFSSIIDSNV 400

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +   G  ++  FA+ +A G++V+  +++      LL 
Sbjct: 401 TTLIACGALFGLGSGLVKGFALTLAIGVLVSMFTALTCTRTFLLV 445


>gi|330963137|gb|EGH63397.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 1034

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/523 (13%), Positives = 149/523 (28%), Gaps = 42/523 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVD 61
               ++L   I  +G++       P+  +   P A                 +   L   
Sbjct: 15  PVATLLLTFAIVLLGVIA-----FPRLPIAPLPEAEFPT-----------IQVTAQLPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        S       +TL F  ++  +  A +V   +  
Sbjct: 59  SPETMASSVATPLEVQFSAIPGMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINT 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D              S VL   ++   +    E S         Q+   E   
Sbjct: 119 AAGRLPADMPSLPTWRKVNPADSPVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVG 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   + +    +  +  P +L  L  T A +                             
Sbjct: 178 QVFITGQQRPAIRVQAAPEKLAALGLTLADIRLAV--------------------QQTSL 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +          ++  ++N      +    +                 +           
Sbjct: 218 NLAKGALYGKDSISTLSSNDQLFKPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKA 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L+          V          S   
Sbjct: 278 WSGDQQGVNIAIFRQPGANIVETVDRIQRELPRLQEMLPATVDVSVLNDRTRTIRASLHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+ V+ + +      L+    + +++I + A++ L G +L   ++  IV
Sbjct: 338 VEMTLLIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E I       Q +  +   G      T+   + + + A + L F G
Sbjct: 398 VAVGFVVDDAIVVVENIHRHLEAGQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMG 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G   + FA+T   +ILIS+  ++++   +    +R     
Sbjct: 458 GVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMRAPTHN 500



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVETVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPATVDVSVLNDRTRTIRASLHEVEMTLLIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 77/202 (38%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   + I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVRMLDQAKIEIGMPAAIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  V+ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGVVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               ++  + I ++        + T+   +   + ++     G  +     I +  G++++
Sbjct: 940  EQGLTPHEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLIS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     K 
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHKR 1021


>gi|167737924|ref|ZP_02410698.1| putative transport system, membrane protein [Burkholderia
           pseudomallei 14]
          Length = 1036

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|226306414|ref|YP_002766374.1| protein-export membrane protein SecD [Rhodococcus erythropolis PR4]
 gi|226185531|dbj|BAH33635.1| protein-export membrane protein SecD [Rhodococcus erythropolis PR4]
          Length = 573

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 115/545 (21%), Positives = 201/545 (36%), Gaps = 42/545 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FV 66
           L      +  L AL            P         LG+DL+GG+ + L     D     
Sbjct: 14  LALFGVLVVALYAL--VFFTGDKSATP--------KLGIDLQGGTRVTLTARTPDGSAPS 63

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK------------ 114
              L+   + + + +   G+    +    + + ++                         
Sbjct: 64  QDSLKQAQEIIETRVNGLGVSGSEVVVDGDNLVITVP-GDDSAQARSLGQTARLYIRPVT 122

Query: 115 ------VTLFLQGVNSKLN----VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
                      +    ++                 +   +            +     + 
Sbjct: 123 GSIDVATRDANRTATPEVPAAETPATDAPAPEAPADGTPTPQNRPFLAQDPTTPEATPAP 182

Query: 165 EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK 224
           E           S+ T +   +   +      +  S         A +      P     
Sbjct: 183 ETTTPAPPVDASSDGTDEGDAAAAEIAAARALRQSSDPTVQQQAVANLDCSVADP-LRGN 241

Query: 225 GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
                       DG    +     I G  +  A++ F+ +  +  + +SF   G+  + E
Sbjct: 242 DDPTLPLVACSQDGLNIYLLGPSIIDGQEIADASSVFNSQQSRHEISLSFKTTGSNTWAE 301

Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIK 343
            T  NIGK  A  LD +V++AP I  A P      I+G+FT E+A  LA  L+ GSLP+ 
Sbjct: 302 FTSANIGKQAAFTLDSKVVSAPTIQGATPAGSATSITGSFTAESAKELANTLKYGSLPLS 361

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
               E   V A LG  S+     A   GLVL++L+ +V Y   G++   S+ L+ ++  A
Sbjct: 362 FAASEAETVSATLGLASLQAALIAGAVGLVLVLLYCLVYYRMLGVLTALSLILSGVMVYA 421

Query: 404 LLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           ++ LL    G TL L  +AG+++GIG+  DS ++  ERI++E R+ +S   ++  G++RA
Sbjct: 422 IMVLLGRYIGFTLDLAGMAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWARA 481

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
             TI   N  + IA  VL+    G VRGFA T+GL+ ++ +     +   ++    R   
Sbjct: 482 RRTILSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTILDVIVVFLVTWPLVSMASRSAF 541

Query: 520 MKSID 524
                
Sbjct: 542 WSKPS 546



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 7/135 (5%)

Query: 692 FALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +    +LIL          L G       +L  +A ++  IG + +  VV ++R++  
Sbjct: 404 LGVLTALSLILSGVMVYAIMVLLGRYIGFTLDLAGMAGLIIGIGMTADSFVVFFERIKDE 463

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SFR  + +         +  +  +FI+   + V     +  FA  +    ++
Sbjct: 464 MRE---GRSFRSAVPRGWARARRTILSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTIL 520

Query: 808 AASSSIFIAAPILLF 822
                  +  P++  
Sbjct: 521 DVIVVFLVTWPLVSM 535


>gi|296132453|ref|YP_003639700.1| acriflavin resistance protein [Thermincola sp. JR]
 gi|296031031|gb|ADG81799.1| acriflavin resistance protein [Thermincola potens JR]
          Length = 1043

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/546 (11%), Positives = 144/546 (26%), Gaps = 40/546 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++      +GL                P     +              +    
Sbjct: 9   KKPVAMTMIIMFFVVLGLFSYTKLGADLFPKANMPFVTITS--------------IYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  S +         + +      L F  S   +         +  
Sbjct: 55  GTEEMESQVVDPIEEQVSSISGLKKVASYINEGVATTVLEFTMSTDADVAVSDTQKAVDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D  K L+         ++    + +       E       +  D++       
Sbjct: 115 VLIKLPRDMDKPLVQKVDLNAEPVITIAVSGE---RSLNEIYEIARDKIKDRLESVPGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++  E D +RL     +  ++     L N++             +     
Sbjct: 172 TVNIVGGQEREILVEVDRNRLAAYGLSVNQVIQRLSLENHNVPSGKIKQTDRNYNIRLLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  EI                     D+                 +      +    
Sbjct: 232 EFTELREIE--------------------DLLIPLPTGGTIPLKDIAKVSDTFKEMERLS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +   ++  S   T E        ++         ++ +        S + 
Sbjct: 272 RLNKKEAVAILVQKQSDASIVDTAEGIRKELESIKKDVPGDIKIVISDDTSTFITNSLAD 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      +  IVL   +   +  ++   +I  ++I T  ++   G T  + S+ G+ 
Sbjct: 332 TKRTLVEGVVMTGIVLLFFLREWRSLVIVMLAIPTSIIATFMMMYFFGFTFNMLSLMGLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDM---GFSRAYSTIFDSNITALIATVVLF 478
           L +G+ VD +I+V E I    +  +S   +          A   I  S++        + 
Sbjct: 392 LCVGILVDDSIVVLENIHRHLQMGKSAEQAAIDGRGEIGMAAVAITLSDVVVFGPIAFMT 451

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F +T+ ++ L S+F + ++   +     +       +      +  +    
Sbjct: 452 GMVGQMFRQFGLTVVVATLFSLFVSFTLTPMLAAKFYKNHSGDKEEKRTNRLWAWVGVKT 511

Query: 539 AIQFMR 544
                R
Sbjct: 512 NALGHR 517



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 6/212 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            LV+ Q           + + ++    ++     I  ++     I+  L       V   
Sbjct: 281 ILVQKQSDASIVDTAEGIRKELESIKKDVPGDIKIVISDDTSTFITNSLADTKRTLVEGV 340

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +  ++ ++   +W   +  +  +   I  T      FG  FN+ ++  +   +G  V+D
Sbjct: 341 VMTGIVLLFFLREWRSLVIVMLAIPTSIIATFMMMYFFGFTFNMLSLMGLSLCVGILVDD 400

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +      S          E    +V  +++  +   P+A      G +
Sbjct: 401 SIVVLENIH---RHLQMGKSAEQAAIDGRGEIGMAAVAITLSDVVVFGPIAFMTGMVGQM 457

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              F + +    + +   S  +   +    Y 
Sbjct: 458 FRQFGLTVVVATLFSLFVSFTLTPMLAAKFYK 489



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 79/264 (29%), Gaps = 39/264 (14%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
              V     +             +    +          +   + + +     ++      
Sbjct: 790  ETVLLKEVADLSYGEGPTQIRHKNRQRMIAITCDYKGASLAEIRKSLDAGFAKLDLPPGF 849

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
            +       K   +     I  +++S I + + + I ++ +      + +L   I   +  
Sbjct: 850  KIEYDGDVKQMDDSNADLIQALVLSLILVYMILTILYESFLTPFIRMLSLPCGIIGAMIA 909

Query: 711  FALFGIEFNLTAVAAVLTLIGYS-------VNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
             A+ G   ++ ++  ++ L G +       ++    + +R           +S RD + +
Sbjct: 910  LAITGTNLDMMSLIGIIMLDGLAAKNGTLLIDYTNTLMER----------GLSLRDALLE 959

Query: 764  SINETLGRSVYTSMAAFISVLP---MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L     TS+     +LP       G  +     I +  G++ +      I  PIL
Sbjct: 960  AGTTRLRPIFMTSVTMIFGMLPTALAFAEGSEIRKGMGIVLVGGLITST-----ILTPIL 1014

Query: 821  L-------------FIYDWRAKNA 831
            +             F    R K A
Sbjct: 1015 IPVAYTLIDDFKNRFFKGRRKKEA 1038



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 57/523 (10%), Positives = 151/523 (28%), Gaps = 31/523 (5%)

Query: 11   YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
              ++   G+  ++      ++   F S   +++ S+ L+L  G+ L             L
Sbjct: 536  VLLVVVAGIAASISLLFTGAIGGEFISNTDQSKFSIVLELTPGTPLQKTDQVVKEFEDRL 595

Query: 71   QMYSDELRSFLKKEGIGVFSMRQIQNK----ITLSFADSRFKENIADKVTLFLQGVNSKL 126
                 E+ S+    G+G  ++          I ++      ++    ++   ++  ++  
Sbjct: 596  -AKIPEVESYFSMVGLGGGAVAPGNASHRAKIYVNLVAKNKRDKTVWQIVDEVRKWDNLF 654

Query: 127  NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                 K                   +    S  + +    +++  ++   +         
Sbjct: 655  PGVEMKVAEAALPGMAYMEAPIIIELSGPDSDTLVRMAGQMKEITEKTPGTLEVKS-SWE 713

Query: 187  HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                 ++  + +  +      +  +++         +    +  +        +    D+
Sbjct: 714  ENGQPEIQVKVNREKAALYGLSAGEIAQALRAAMAGEVATQYREKGKEYDITVKLTDIDR 773

Query: 247  VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
              +  +     T           V       G  +     R                   
Sbjct: 774  NNVEELGNTTVTNYRGETVLLKEVADLSYGEGPTQIRHKNRQR----------------- 816

Query: 307  VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                 + +      G    E    L A      LP    I  + +V     S++      
Sbjct: 817  -----MIAITCDYKGASLAEIRKSLDAGFAKLDLPPGFKIEYDGDVKQMDDSNADLIQAL 871

Query: 367  AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
             +   LV ++L ++        +   S+   +I  +  L++ G  L + S+ GI++  GL
Sbjct: 872  VLSLILVYMILTILYESFLTPFIRMLSLPCGIIGAMIALAITGTNLDMMSLIGIIMLDGL 931

Query: 427  AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV---LFFFGGG 483
            A  +  L+ +       +  S+  +L    +     IF +++T +   +     F  G  
Sbjct: 932  AAKNGTLLIDYTNTLMERGLSLRDALLEAGTTRLRPIFMTSVTMIFGMLPTALAFAEGSE 991

Query: 484  AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
              +G  I +   ++ S      ++      I  +K        
Sbjct: 992  IRKGMGIVLVGGLITSTILTPILIPVAYTLIDDFKNRFFKGRR 1034


>gi|237785618|ref|YP_002906323.1| preprotein translocase subunit SecD [Corynebacterium kroppenstedtii
           DSM 44385]
 gi|237758530|gb|ACR17780.1| protein-export membrane protein [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 648

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 112/580 (19%), Positives = 206/580 (35%), Gaps = 69/580 (11%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            + W      +     + + L  FL  +               LG+DL+GG+ + L    
Sbjct: 12  KSRWPYRAIGIFVIFLVAVYLLVFLTGNKKPEP---------KLGIDLQGGTRVTLVPQG 62

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
               N  L+     L + +   G+   +++   N + ++           +         
Sbjct: 63  SQPSNDQLEQARKILENRVNGMGVSGATVQTDGNTLVITVP-GDDSAQARNLGQTSQLLF 121

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              LN       +      +  + ++   +   +    + + + + +   Q+    S+ Q
Sbjct: 122 RPVLNQQAAAQEVDRGKLAQTVVDMANRWVKTDVISP-DNAQKALDELKKQLEQYNSSGQ 180

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN--- 239
             G     I    +       +   +  +    +       K           + G+   
Sbjct: 181 AQGQEAFAIPESMKITAKPEAKPANSIEENKQREQTSAMLLKDRQSEDPTTLQAAGSLLE 240

Query: 240 -------------------------------------QYLVEDKVEISGIHLNG------ 256
                                                Q   +D   ++G  ++       
Sbjct: 241 CKGSDPLAGQDDPAKPLVTCDQDKSVHLLDAAPVLVGQEGKKDPQRLTGEEIDTNSPITG 300

Query: 257 -ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP-S 314
              +N            S  + G   + EVT+   G+ +A+ LD  V++AP I    P  
Sbjct: 301 GYDSNSGQMAITFKFKTSNKDKGGDTWAEVTQKYQGQQVAITLDSEVISAPTIQSPTPAG 360

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKL------NIVEERNVGADLGSDSIYKGTCAI 368
              QI+G F+   A  LA  L+ G+LPI               + A LG  S+  G  A 
Sbjct: 361 STTQITGKFSEAEAKDLANNLKYGALPISFAGENGEKGGTATTIPATLGFASLKAGLIAG 420

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGI 424
             GL+L+ L+ +  Y   G++  FS+ L+ +L    L LL    G +L L  IAG+++GI
Sbjct: 421 GIGLILVALYALAYYRGLGVITIFSLLLSALLIYGSLVLLGRWVGYSLDLAGIAGLIIGI 480

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G   DS ++  ERI++E R  ++   ++   + RA  TI   N+ +LIA VVL+    G 
Sbjct: 481 GTTADSFVVYFERIKDEIRDGRTFRSAVPKAWERARRTILSGNLVSLIAAVVLYILAVGD 540

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           V+GFA T+GL+ +  +F    +   ++I   R        
Sbjct: 541 VKGFAFTLGLTTVFDLFVVFLVSAPLIILASRKPFFSKPS 580



 Score = 95.1 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 76/267 (28%), Gaps = 32/267 (11%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            G     V          +  + E +    I      G    +     +         + 
Sbjct: 323 GGDTWAEVTQKYQGQQVAITLDSEVISAPTIQSPTPAGSTTQITGKFSEAEAKDLANNLK 382

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
                                +   +    ++ G++   I  I + +Y    ++    + 
Sbjct: 383 YGALPISFAGENGEKGGTATTIPATLGFASLKAGLIAGGIGLILVALYALAYYR-GLGVI 441

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN----------------DKVV 739
            I +L+L      G   L G              +GYS++                  VV
Sbjct: 442 TIFSLLLSALLIYGSLVLLGR------------WVGYSLDLAGIAGLIIGIGTTADSFVV 489

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
            ++R++  ++      +FR  + K+        +  ++ + I+ + + +     +  FA 
Sbjct: 490 YFERIKDEIRD---GRTFRSAVPKAWERARRTILSGNLVSLIAAVVLYILAVGDVKGFAF 546

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDW 826
            +    V        ++AP+++     
Sbjct: 547 TLGLTTVFDLFVVFLVSAPLIILASRK 573


>gi|167815105|ref|ZP_02446785.1| putative transport system, membrane protein [Burkholderia
           pseudomallei 91]
          Length = 1036

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|167845071|ref|ZP_02470579.1| putative transport system, membrane protein [Burkholderia
           pseudomallei B7210]
          Length = 1036

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|167718921|ref|ZP_02402157.1| putative transport system, membrane protein [Burkholderia
           pseudomallei DM98]
 gi|167902061|ref|ZP_02489266.1| putative transport system, membrane protein [Burkholderia
           pseudomallei NCTC 13177]
          Length = 1036

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|254180302|ref|ZP_04886901.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 1655]
 gi|184210842|gb|EDU07885.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 1655]
          Length = 1036

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|296103739|ref|YP_003613885.1| multidrug efflux system subunit MdtB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295058198|gb|ADF62936.1| multidrug efflux system subunit MdtB [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 1040

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/652 (10%), Positives = 172/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  S   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLSLSLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +       N +                    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAISNANVNSAKGSLDGPT---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V +S      +   +          +                 + +       G  
Sbjct: 234 --RAVTLSANDQMQSADEYRQ--------LIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKQQAIVMNVQRQPGANIIETADSIRTMLPQLIESLPKSVTVKVLSDRTTNIRASVTDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ ++ ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERMFEQIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    +L+          +    +      P  +S  
Sbjct: 524 AYGRVLAKVLNHPWATLGVALGTLALSVILWIVIPKGFFPIQDNGIIQGTLQAPQSVSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ DI  ++   E             S+   R+   +K       
Sbjct: 584 SMAQRQQQVSDIIMKDPAVESLTAYVGVDGTNPSLNSARLQINLKPLDDRDD 635



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|167893615|ref|ZP_02481017.1| putative transport system, membrane protein [Burkholderia
           pseudomallei 7894]
          Length = 1036

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|194443591|ref|YP_002041399.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|226700683|sp|B4SXW0|MDTB_SALNS RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|194402254|gb|ACF62476.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 1040

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETIRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRKLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|76808728|ref|YP_332904.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1710b]
 gi|254260113|ref|ZP_04951167.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 1710a]
 gi|76578181|gb|ABA47656.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1710b]
 gi|254218802|gb|EET08186.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 1710a]
          Length = 1036

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|237722070|ref|ZP_04552551.1| multidrug resistance protein mexB [Bacteroides sp. 2_2_4]
 gi|229448939|gb|EEO54730.1| multidrug resistance protein mexB [Bacteroides sp. 2_2_4]
          Length = 1059

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/601 (11%), Positives = 157/601 (26%), Gaps = 52/601 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P              ++     
Sbjct: 8   KRPVMAISISVLILAIGLISLF-----TLPVEQYPDIAPPT-----------VYVTASYT 51

Query: 62  EDDFVNGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             D     +      L   +        I   +       I + F      +  A  V  
Sbjct: 52  GADA-EAVMNSVIMPLEESINGVEDMMYISSSASNAGLAIIQVYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   + +               +  +    I QI   
Sbjct: 111 RVAKAQGLLPAEVTKVGVSTMKRQTSFLQIGALVCTDGRYDQTFLANYLDINVIPQIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     +        +     P R+ Q     + ++      N        G        
Sbjct: 171 EGVGDVMELGD-TYSMRIWLKPERMAQYGLVPSDITAILGEQNIEAPTGALGESSKNVFQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                        +    +                 +       
Sbjct: 230 ----------------FTMKYRGRLKSVEEFRNTVVRSREDGSILRLQDVAEVELGTMTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                + +      +    A  +     +        +          +    +      
Sbjct: 274 SFRSEMDSQPAVLYMIFQTAGSNATAVNKEITAQIERMEKNLPAGTEFVTMMSSNDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   LV++V++  +   K  L+   SI ++++ T A L   G +L + ++
Sbjct: 334 SIHNVVETLIIAIILVILVVYFFLQDLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG  VD  I+V E ++ +      S + +           I       +   + 
Sbjct: 394 FALVLAIGTVVDDAIVVVEAVQSKFDAGYKSAYLATKDAMGDVTMAIVSYTCVFMAVFIP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL----- 528
           + F GG +      F ITM  ++ ISM +A+++  A+   ++R         +       
Sbjct: 454 VTFMGGTSGVFYTQFGITMATAVGISMISALTLCPALCAIMMRPSDGTKSAKSINGRVRA 513

Query: 529 -----SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L      + F     W V  S+  ++  +  L +      +  +    + V
Sbjct: 514 AYNASFNAVLGKYKRGVMFFIRHRWMVWTSLAVAVALLVYLMSTTKTGLVPQEDQGVIMV 573

Query: 584 L 584
            
Sbjct: 574 N 574



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 80/291 (27%), Gaps = 8/291 (2%)

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                    +         ++      Y +D +    + V     +        L+ +   
Sbjct: 750  YCGGAYISNYNQYGKVYRVMMQASPEYRLDEQALNNMFVRNGTQMAPVSQFVTLKQVLGP 809

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            + + +                  S    +V+E V  +                       
Sbjct: 810  ETANRFNLYSTITANVNPADGYSSGEVQKVIEEVAAQSLPAGYGYEYGGMAREEASSGGA 869

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 I  + I  I  LI   +   +      I ++   +  +  F  + G+E N+    
Sbjct: 870  QTVF-IYAICIFLIY-LILACLYESFLIPFAVIFSVPFGLMGSFLFAKILGLENNIYLQT 927

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ LIG      +++ +     ++     +   +    +    L   + T +     +L
Sbjct: 928  GVIMLIGLLAKTAILITE---YAIERRRKGMGIVESAYSAAQVRLRPILMTVLTMIFGML 984

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+      G +   S    +  G+ V   + +F+     +     + K  +
Sbjct: 985  PLMFSSGAGANGNSSLGTGVVGGMAVGTLALLFVVPVFYIIFEFLQEKIRK 1035



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 50/140 (35%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++I+ +  T       G   N+  + A++  IG  V+D +VV + ++   
Sbjct: 359 DLKSTLIPSISIIVSLVGTFACLVAAGFSLNILTLFALVLAIGTVVDDAIVVVEAVQSKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                S         ++ +     V  +       +P+   GG+       F I MA  +
Sbjct: 419 DAGYKSAYL--ATKDAMGDVTMAIVSYTCVFMAVFIPVTFMGGTSGVFYTQFGITMATAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++  S++ +   +   +  
Sbjct: 477 GISMISALTLCPALCAIMMR 496


>gi|225181247|ref|ZP_03734692.1| acriflavin resistance protein [Dethiobacter alkaliphilus AHT 1]
 gi|225168027|gb|EEG76833.1| acriflavin resistance protein [Dethiobacter alkaliphilus AHT 1]
          Length = 1033

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/606 (11%), Positives = 169/606 (27%), Gaps = 49/606 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEV 60
           R    +++   ++  +G    L        +D  P    P   +  G D           
Sbjct: 9   RRPIAVLMAVCIVLVLGGFAFL-----NLPVDLLPEMEFPVIAVVTGYD----------G 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +++ + +        +  Q  + + L F      +  A  V   + 
Sbjct: 54  AAPEEVENMVTRPLEQILATVPGVERISSTSSQGNSVVVLQFNWGSDMDFRALDVRERVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  D    L+V      + +V      D   +     + +       ++   +  
Sbjct: 114 RVVGYLPDDVDSPLMVQADPSMMPVVSIAITGDMGPADLKRLAEDT---VQPRLERIDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   I  ++    DP+RL     T  ++     + N +                  
Sbjct: 171 ASVDVIGGIEREIRVVADPARLAAYGLTLDQLGQIFRMENLNVSAGTLAEGGQELQVRTL 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++                     ++          +      +    +     
Sbjct: 231 GQFSSLSDLE--------------------NLVLHSSERGTVYLRDVAEVQDTHSEQEQL 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L          S ++  +              L           +          S  
Sbjct: 271 LRLNGTPGVGLNVSKQSDANTVTVAGRIDSALQELSGELPTGSEAAILFNQADFINDSIG 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L + +LFM +   +  LV   +I +++I T  L+     TL L ++ G+
Sbjct: 331 DVLSIGLAGAVLAVFILFMFLRNVRSTLVIGLAIPVSIISTFVLMFFNNLTLNLITLGGL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            LGIG+ VD+ I++ E I    ++      +  +G +     I  + +T ++  + + F 
Sbjct: 391 ALGIGMMVDNAIVILENIFRLRQEGMEAKEAAAVGSNEVADAIIAATLTTVVVFLPVIFV 450

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDINPLSR 530
                      A T+  ++  S+  A++I+  +   +++     +        +      
Sbjct: 451 EGIASQIFSSMAWTVSFALFASLAVALTIIPLLSSRLLQVSVNNNEGKLSAAFERGFKRV 510

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +    +     R +     + + F+     + +           G + + V       
Sbjct: 511 ESVYGRLLRWAMTRRKIVIGVMLLAFAGSVALVPWVGTEFIPGMDDGWLTVSVRLPDGAT 570

Query: 591 LSVVRS 596
           L+   +
Sbjct: 571 LNETEA 576



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 73/237 (30%), Gaps = 8/237 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R   E         Q         V L            V   +   + E+       +
Sbjct: 254 LRDVAEVQDTHSEQEQLLRLNGTPGVGLNVSKQSDANTVTVAGRIDSALQELSGELPTGS 313

Query: 654 TEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              +    +  +         +G+  + +A+ I           L     + + I  T  
Sbjct: 314 EAAILFNQADFINDSIGDVLSIGLAGAVLAVFILFMFLRNVRSTLVIGLAIPVSIISTFV 373

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 +  NL  +  +   IG  V++ +V+ + +    +L    +  ++      NE  
Sbjct: 374 LMFFNNLTLNLITLGGLALGIGMMVDNAIVILENI---FRLRQEGMEAKEAAAVGSNEVA 430

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +  ++   +  LP+    G     F+  MA+ +  A  +S+ +A  I+  +   
Sbjct: 431 DAIIAATLTTVVVFLPVIFVEGIASQIFS-SMAWTVSFALFASLAVALTIIPLLSSR 486



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/386 (11%), Positives = 111/386 (28%), Gaps = 8/386 (2%)

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           +VD  +   ++ R +N +              A  T+  S   ++  + V          
Sbjct: 617 SVDVRLTPLDQRRLDNDQVADEVRQALKTLPGAEITVQASQGMSMGGSGVPVDIMVKGDS 676

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
              +      +  +   +   R       R      + ++           I +     R
Sbjct: 677 LETLRHLTEEIRLIVEGVEGTREAATSFDRGWPELQVTVDREKAAAYGLQSITVANT-LR 735

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
               G  +         L           +    L  +       S +     +      
Sbjct: 736 TALSGQVVTRFRTGSQELDVRLFVPEEMRQSISMLQDIEVVNPAGSRIPLGEVADFARAT 795

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              +   +               A   V+  +++++  +   S          ++  +  
Sbjct: 796 GPVSISRDDQVRSARVTAQLAGRALGPVMADIQRQLDNMELPSGYSIEYAGEQELMADSF 855

Query: 667 RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               + + ++ + + + +  +F+        +  L       +    + G   N+ A   
Sbjct: 856 DSLWMALALAVLLVYMIMAAQFESLLHPFIIMFALPQTFIGVVLALVITGRTLNVPAFIG 915

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           V+ L G  VN+ +V+ D +    KL    +S R+ I ++    L   + T++   + + P
Sbjct: 916 VIMLAGIVVNNAIVLVDYIN---KLRERGLSTREAIYQAGPIRLRPILMTTLTTILGMFP 972

Query: 786 MAV---WGGSVIGSFAIPMAFGIVVA 808
           +A+    G       A  +  G+  +
Sbjct: 973 LALGIGSGSETSAPLATVVIGGLAAS 998


>gi|299136314|ref|ZP_07029498.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
 gi|298602438|gb|EFI58592.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
          Length = 1043

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/526 (14%), Positives = 156/526 (29%), Gaps = 33/526 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P       IS+G  L G           D +   +    +     +     
Sbjct: 29  FTVLPVSPLPQVDFPT-ISVGASLPG--------ASADIMASSIATPLERQFGHIAGVTE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S       IT+ F  SR  +  A  V   +    + L  +   N          S +
Sbjct: 80  MTSSSSLGATSITIQFDLSRNIDGAARDVEAAINAARTYLPTNLPSNPTYRKVNPADSPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    +   I    +   E       ++   E   Q       L  +  E +P++L    
Sbjct: 140 MI-IALTSDIYGPDKLYDEASTVMEQKLSQIEGVGQVSAGGGALPSVRVEVNPTKLASYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
              + +     L N                      +      +G        N      
Sbjct: 199 LAMSDLQAMLSLQNT--------------------NLARGQITNGDASADIVVNGQISHA 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           +    +                ++   +  V  G  L        I   +   +   T++
Sbjct: 239 EEYKPLIVGYHNGTAIHLSDVSDVVDSVQNVRAGGYLNGKRAIVLIVFRQPGANIIDTVD 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L+A                    S    + T  +   LV++V+F+ +  G+ 
Sbjct: 299 RIDEQMPSLQATIPQGITITKVLDRTTTIRASVDDVERTLILSVCLVIVVVFIFLRNGRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ +++I T A++ + G +L   S+  + +  G  VD  I+V E I        
Sbjct: 359 TLIPAVAVPVSLIGTFAIMYMCGYSLDNLSLMALTISTGFVVDDAIVVMENITRHIEDGV 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           + F +   G      T+   +I+ +   + L   G   G   R FA+T+  +IL+SM  +
Sbjct: 419 APFAAALKGAQEIGFTVVSISISLIAVFIPLLLMGGIVGRLFREFAVTLSTAILVSMAVS 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           ++    M  ++++ +  K      ++        + I      +  
Sbjct: 479 LTTTPMMCAYLLKSEHNKKHGRLYMAMEGAFDWVLNIYRKSLHWVL 524



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 77/211 (36%), Gaps = 10/211 (4%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                     +  ++  I + + ++ + +          ++ R  I+ V +  + + I++
Sbjct: 294 IDTVDRIDEQMPSLQATIPQGITITKVLDRTTTIRASVDDVERTLILSVCLVIVVVFIFL 353

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L     + + +  T     + G   +  ++ A+    G+ V+D +VV + +
Sbjct: 354 ---RNGRATLIPAVAVPVSLIGTFAIMYMCGYSLDNLSLMALTISTGFVVDDAIVVMENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +     ++      K   E     V  S++     +P+ + GG V      FA+ +
Sbjct: 411 ---TRHIEDGVAPFAAALKGAQEIGFTVVSISISLIAVFIPLLLMGGIVGRLFREFAVTL 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  I+V+ + S+    P++         N +
Sbjct: 468 STAILVSMAVSL-TTTPMMCAYLLKSEHNKK 497



 Score = 45.1 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 68/162 (41%), Gaps = 8/162 (4%)

Query: 673  VIISAIAMLIYIWIRFKWYFALGAITTLI--LDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            V+ + IA+ I + + ++       I + +    +   L    LF  + N+ ++  ++ LI
Sbjct: 864  VLTALIAVYIVLGVLYESLMHPLTILSTLPSASVGAMLALM-LFKEDLNVISIIGIVLLI 922

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ D   +  +     ++  D I ++        + T+MAA    LP+A   
Sbjct: 923  GIVKKNAIMMIDFALQQEREG--GMNTEDAIFEACMLRFRPILMTTMAALFGALPLAFGT 980

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              G  +     I +  G++V+   +++    + L +   R +
Sbjct: 981  GTGSELRRPLGITIVGGLIVSQLLTLYTTPVVYLTLDKLRLR 1022


>gi|294628360|ref|ZP_06706920.1| preprotein translocase, SecD subunit [Streptomyces sp. e14]
 gi|292831693|gb|EFF90042.1| preprotein translocase, SecD subunit [Streptomyces sp. e14]
          Length = 582

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 119/561 (21%), Positives = 207/561 (36%), Gaps = 64/561 (11%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED--- 63
            +IL +++   G + A  N  P+                LG+DL GG+ + L    +   
Sbjct: 2   ALILIAIVALTGGMFASGNTTPR----------------LGIDLAGGTSITLRAVPERGQ 45

Query: 64  --DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
                   +    + +   +   G+    ++   +  I ++       +   ++V    +
Sbjct: 46  ESAINKTNMNTAVNIMERRVNGLGVSEAEVQTQGDDNIIVNIPKGTNSKQAREQVGTTAK 105

Query: 121 G-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII------------ 167
                 L  +        +     S   S          A  QS E              
Sbjct: 106 LYFRPVLATELSAGAATASPSPGASSSPSGKASASPSGKATAQSGEKATSGSESPSATAT 165

Query: 168 ---RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK 224
              R   D +    +      +       P     +            +        +  
Sbjct: 166 QQGRAVTDALKADATPSAGATASAKASATPKASTSASPSPSGSAGDDATAKLQAQYTALD 225

Query: 225 GFMFGVRFLRD----------------SDGNQYLVEDKVEISGIHLNGATANFD-PKTHK 267
                VR                    S   Q  +     + G  +    A FD      
Sbjct: 226 CSKESVRATAGKGVLPTEPTVACGKNSSGVWQKYLLGPAAVDGTDVKKGQAVFDTQGAAG 285

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVL-----DGRVLTAPVINQAIPSGKAQISGN 322
            +V + F   GA++F +VT                 DG V++ P +  AI  G A+ISG+
Sbjct: 286 WIVQLDFTGSGAKKFADVTGKLAQNQEPQNQFAIVLDGEVVSDPRVTTAITGGNAEISGS 345

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           F  ++A  LA ML  G+LP+         V A LG D ++ G  A   GL L+V+++++ 
Sbjct: 346 FDQQSAQSLANMLSYGALPLTFKEDSVTTVTAALGGDQLHAGLIAGAIGLALVVVYLLIF 405

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           Y    L+A  S+ ++ IL   ++SLLG      L LP++ G ++ IG+  DS I+  ERI
Sbjct: 406 YRGLSLIAIPSLLVSAILAYVIMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVFFERI 465

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
           R+E R+ +S+  +++  + RA  TI  S+  + +A  VLF    G V+GFA T+GL+ L+
Sbjct: 466 RDEIREGRSLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLL 525

Query: 499 SMFTAISIVRAMMIFIIRYKK 519
            +       + +M  + R K 
Sbjct: 526 DVVVVFLFTKPLMTILARRKF 546



 Score =  104 bits (257), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 28/207 (13%), Positives = 75/207 (36%), Gaps = 8/207 (3%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    Q+            +       +   V   +  + +  G++   I    +++Y+
Sbjct: 343 SGSFDQQSAQSLANMLSYGALPLTFKEDSVTTVTAALGGDQLHAGLIAGAIGLALVVVYL 402

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVV 740
            I ++   +L AI +L++         +L G       NL AV   +  IG + +  +V 
Sbjct: 403 LIFYR-GLSLIAIPSLLVSAILAYVIMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVF 461

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++R+R  ++      S R  ++++        + +   +F++   + +     +  FA  
Sbjct: 462 FERIRDEIRE---GRSLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFT 518

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWR 827
           +    ++          P++  +   +
Sbjct: 519 LGLTTLLDVVVVFLFTKPLMTILARRK 545


>gi|220917045|ref|YP_002492349.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954899|gb|ACL65283.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1041

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/549 (12%), Positives = 152/549 (27%), Gaps = 34/549 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ +     GL+        +  +   P+                    L   
Sbjct: 9   RRPVMTTLVMASFIAFGLVA-----YQKLPVSDLPNVDFPTI---------SVSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        S      +ITL F   R  +  A  V   +  
Sbjct: 55  SPETMASSVATPLERQFSTIAGLAAMNSSSGLGTTQITLEFDLDRNIDAAAQDVQSAISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +      +       + ++   ++        + +         ++       
Sbjct: 115 AGRQLPQNMPSPPTLRKVNPADAPIVY-FSLTSPTLPLSDLNRFAQDVVAQRVATIAGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP  L        + +      N +    +        +     
Sbjct: 174 QVLVYGPQKYAVRIELDPQALAARGIGLDEATAAIAAANPNLPAGLVQGGARAFTVEATG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                    V+                R  +   LA     +
Sbjct: 234 GLMRARD----------------FADVVLAFRNGAPVRVADVGRARAGVENELAAAWLWK 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +     +    L   LRA         +          S + 
Sbjct: 278 DGREQRAIVLAVQRQPGTNTVAVAQAVRQLLPTLRAQLPGAAQLELLYDRSETIEESVTD 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV++V+F+ +      ++   ++ +++I T AL+  LG +L   S+  + 
Sbjct: 338 VKFTLLLTLALVVLVIFVFLRNLPATVIPSLALPVSLIGTFALMFQLGYSLDNLSLMALT 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E +       +  F +   G      TI    I+     + + F G
Sbjct: 398 LAVGFVVDDAIVMLENVVRHMEMGERPFEAALNGSKEIAFTIVSMTISLAAVFLPVLFMG 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+T+G +IL+S F ++++   +    +R  K         +        +
Sbjct: 458 GIVGRLFHEFAVTIGAAILVSGFVSLTLTPMLCSRFLRPGKEAHHGRLYAATERAFEASL 517

Query: 539 AIQFMRARF 547
            I      +
Sbjct: 518 RIYDRGLVW 526



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 56/154 (36%), Gaps = 11/154 (7%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++++R      +     L + +  T       G   +  ++ A+   +G+ V+D +V+ 
Sbjct: 353 IFVFLR-NLPATVIPSLALPVSLIGTFALMFQLGYSLDNLSLMALTLAVGFVVDDAIVML 411

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFA 798
           + +   ++         +       E     V  +++     LP+   GG V      FA
Sbjct: 412 ENV---VRHMEMGERPFEAALNGSKEIAFTIVSMTISLAAVFLPVLFMGGIVGRLFHEFA 468

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + +   I+V+   S+ +       +     +  +
Sbjct: 469 VTIGAAILVSGFVSLTLTP----MLCSRFLRPGK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 64/155 (41%), Gaps = 7/155 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + + I ++ +      +T L       L    LF +E +L A   ++ L+G 
Sbjct: 864  VMAVLVIYVVLGILYESFAHPFTILTALPFAGLGALVTLLLFRVELSLYAFVGIVMLVGL 923

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   +  +      +  + I ++        + T+MAA +  LP+A+    
Sbjct: 924  VKKNGIMMVDFAVEAQRG---GRTPAEAIREACLVRFRPIMMTTMAALMGTLPIALGFGA 980

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            G        + +  G+V +   ++F+     + + 
Sbjct: 981  GAESRRPLGLAVVGGLVFSQLLTLFVTPVFYVAME 1015


>gi|51597131|ref|YP_071322.1| multidrug efflux system subunit MdtC [Yersinia pseudotuberculosis
           IP 32953]
 gi|153947914|ref|YP_001400194.1| multidrug efflux system subunit MdtC [Yersinia pseudotuberculosis
           IP 31758]
 gi|60389946|sp|Q668C5|MDTC_YERPS RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|167008982|sp|A7FG16|MDTC_YERP3 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|51590413|emb|CAH22053.1| AcrB/AcrD/AcrF (HAE1) family (RND Superfamily) drug efflux pump
           [Yersinia pseudotuberculosis IP 32953]
 gi|152959409|gb|ABS46870.1| multidrug resistance protein MdtC [Yersinia pseudotuberculosis IP
           31758]
          Length = 1024

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/618 (11%), Positives = 158/618 (25%), Gaps = 33/618 (5%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +             +   + + +   +    +     +    
Sbjct: 28  GFSLLPVSPLPQVDYPVIM---------VSASMPGADPETMASSVATPLERALGRIAGVN 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +      +I L F  +R     A  V   L    S L                 + 
Sbjct: 79  EMTSTSSLGSTRIILQFDLNRDINGAARDVQAALNAAQSLLPSGMPSRPTYRKMNPSDAP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++    +        +       +   +I  +E           L  +  E +PS L   
Sbjct: 139 IMI-MTLTSDTFSQGQLYDYASTKLAQKIAQTEGVSDVTVGGSSLPAVRVELNPSALFNQ 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +       N  +                   ++                     
Sbjct: 198 GVSLDAVRQAISAANVRRPQGSVDAAETHWQVQANDEIKTA------------------- 238

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                N+   +  V +  +         + S +   +   T+
Sbjct: 239 -EGYRPLIVHYNNGSPVRLQDVANVIDSVQDVRNAGMSAGQPAVLLVISREPGANIIATV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        LRA         + +        S    + +  I   LV++V+F+ +  G+
Sbjct: 298 DRIRAELPALRASIPASIQLNIAQDRSPTIRASLDEVERSLVIAVALVILVVFIFLRSGR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ +++I T A + L G +L   S+  + +  G  VD  I+V E I       
Sbjct: 358 ATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFT 502
                +   G      T+   +I+ +   + L    G      R FA+T+ ++I IS+  
Sbjct: 418 VKPMVAALRGVREVGFTVLSMSISLVAVFIPLLLMAGLPGRLFREFAVTLSVAIGISLVI 477

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           ++++   M  +++R                L+              G    ++  + S  
Sbjct: 478 SLTLTPMMCAWLLRSHPKGQQQRIRGFGKVLLAIQQGYGRSLNWALGHTRWVMVVLLSTI 537

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            L               Q        +      S     Q      Q    +        
Sbjct: 538 ALNVWLYISIPKTFFPEQDTGRMMGFIQADQSISFQSMQQKLKDFMQIVGADPAVDSVTG 597

Query: 623 YQPGDSVAQTRVLEMVKK 640
           +  G       +   +K 
Sbjct: 598 FTGGSRTNSGSMFISLKP 615



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 91/253 (35%), Gaps = 7/253 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V + ++S+Q    +  +       LV  +    + +A    +     
Sbjct: 246 VHYNNGSPVRLQDVANVIDSVQDVRNAGMSAGQPAVLLVISREPGANIIATVDRIRAELP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S   N         R  + +    ++I+   +++ ++I  +     L     
Sbjct: 306 ALRASIPASIQLNIAQDRSPTIRASLDEVERSLVIAVALVILVVFIFLRSGRATLIPAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +    
Sbjct: 366 VPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPMV 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ + 
Sbjct: 423 AALRGVREVGFTVLSMSISLVAVFIPLLLMAGLPGRLFREFAVTLSVAIGISLVISLTLT 482

Query: 817 APILLFIYDWRAK 829
             +  ++     K
Sbjct: 483 PMMCAWLLRSHPK 495



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     V++ +TE+   ST++       ++ +E ++  +  ++ +   
Sbjct: 803  TISFNLPDGGSLSEATAAVERAMTELGVPSTVRGAFAGTAQVFQETLKSQLWLIMAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     IS R+ I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALDAQRNGN--ISAREAIFQASLLRFRPIIMTTLAALFGALPLVLSSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+VV+   +++    I L+    R + ++
Sbjct: 981  PLGITIVGGLVVSQLLTLYTTPVIYLYFDRLRNRFSK 1017


>gi|154492370|ref|ZP_02031996.1| hypothetical protein PARMER_02004 [Parabacteroides merdae ATCC
           43184]
 gi|154087595|gb|EDN86640.1| hypothetical protein PARMER_02004 [Parabacteroides merdae ATCC
           43184]
          Length = 1064

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 74/622 (11%), Positives = 166/622 (26%), Gaps = 54/622 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  IGL+           ++++P   P              H+     
Sbjct: 8   KRPVMAISISILILAIGLISLF-----TLPVEQYPDIAPPT-----------VHVSATYT 51

Query: 62  EDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTL 117
             D     +      L   +   E +   +          I + F      +  A  V  
Sbjct: 52  GADANA-VMNSVIMPLEESINGVENMMYMTSTATNAGSATIEVYFKQGTNPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  + T   +   + +                  +    I +I   
Sbjct: 111 RVTKAQGLLPAEVTRIGVSTQKRQTSFLQIDALVSTDGRFDKTFLGNYLDINVIPRIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     +        +    +P R+ Q     + ++      N        G       +
Sbjct: 171 EGVGDVMELGD-TYSMRIWLNPERMAQYGLVPSDVTAVLGEQNIEAPTGSLGENSK---N 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY ++ +  +                 +    +   +             +       
Sbjct: 227 VFQYTMKYRGRL-------------KSVEEFQNIVVRAQEDGSVLRLKDVAKVELGTLSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        +    A  +     E        ++         I    +      
Sbjct: 274 GFDSQMDGKPAVTFMIYQVAGSNATEVNERIAAELEKMKEELPTGMEFITMMSSNDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  +   LV++V++  +   K  L+   SI +++I T A L+  G T+ + ++
Sbjct: 334 SIYNVVETLIVAIILVILVVYFFLQDFKSTLIPSISIIVSLIGTFACLTAAGFTINILTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG  VD  I+V E ++ +      S + +           +       +   + 
Sbjct: 394 FALVLAIGTVVDDAIVVVEAVQAKFDAGYTSSYQATKDAMGDVTMAVISCTCVFMAVFIP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG +      F +TM  S+ +SM  A+++  A+   ++R         +   R   
Sbjct: 454 VTFMGGTSGIFYTQFGVTMATSVGLSMICALTLCPALCAMMMRPSDGNKSAKSFNGRVRA 513

Query: 534 IPDCI------------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +                          G      +    +  T       + +G I  
Sbjct: 514 AYNASFNAVLGKYKKGVMFFIHHRWMVWAGTIASIILLGWLISNTKTGLVPQEDQGTIMA 573

Query: 582 GVLANRPVDLSVVRSNLESLQI 603
            V       L      L+ ++ 
Sbjct: 574 NVAIAPGSTLEETGKVLDKVEN 595



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/364 (12%), Positives = 112/364 (30%), Gaps = 9/364 (2%)

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+ +    L    G   + F        +I     I  V  +M     Y     ++   +
Sbjct: 135 TSFLQIDALVSTDGRFDKTFLGNYLDINVIPRIKRIEGVGDVMELGDTYSMRIWLNPERM 194

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +++ L+P  +              S+  +  ++              +    + V A   
Sbjct: 195 AQYGLVPSDVTAVLGEQNIEAPTGSLGENSKNVFQYTMKYRGRLKSVEEFQNIVVRAQED 254

Query: 589 VDL---SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             +     V              Q         +  Q    ++      +    +K+ E 
Sbjct: 255 GSVLRLKDVAKVELGTLSYGFDSQMDGKPAVTFMIYQVAGSNATEVNERIAAELEKMKEE 314

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
           +P      T +         I   +  +I++ I +++ ++     +   L    ++I+ +
Sbjct: 315 LPTGMEFITMMSSNDFLFASIYNVVETLIVAIILVILVVYFFLQDFKSTLIPSISIIVSL 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T       G   N+  + A++  IG  V+D +VV + ++       T  S       +
Sbjct: 375 IGTFACLTAAGFTINILTLFALVLAIGTVVDDAIVVVEAVQAKFDAGYT--SSYQATKDA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           + +     +  +       +P+   GG+       F + MA  + ++   ++ +   +  
Sbjct: 433 MGDVTMAVISCTCVFMAVFIPVTFMGGTSGIFYTQFGVTMATSVGLSMICALTLCPALCA 492

Query: 822 FIYD 825
            +  
Sbjct: 493 MMMR 496



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 71/255 (27%), Gaps = 9/255 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                         LS   +    L     +  N        V           Q  + E+
Sbjct: 784  NNMFVRNGTEMAPLSQFVTLKRVLGPEVSNRFNLFSCITVNVNPAPGYSTGEVQQAIEEV 843

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              + +                     + +   I  V I  I  LI   +   +      I
Sbjct: 844  AAQMLPTGYGYEYGGMAREEANTGGSQTLF--IYAVCILLIY-LILACLYESFLVPWAVI 900

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             ++   +  +  F  LFG+E N+     V+ LIG      +++ +   +        +  
Sbjct: 901  LSVPFGLMGSFLFAKLFGLENNIYLQTGVIMLIGLLAKTAILITEFAIE---RRRKGMGI 957

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF 814
             +    +    L   + T +     +LP+      G +   S    +  G+ V   + +F
Sbjct: 958  VESAYSAAQARLRPILMTVLTMIFGMLPLMFASGAGANGNSSLGTGVVGGMAVGTLALLF 1017

Query: 815  IAAPILLFIYDWRAK 829
            +     +     + K
Sbjct: 1018 VVPVFYIIFEYMQEK 1032


>gi|255035941|ref|YP_003086562.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
 gi|254948697|gb|ACT93397.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
          Length = 1052

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/501 (12%), Positives = 144/501 (28%), Gaps = 38/501 (7%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKK-EG 85
               + +FP   P               + +           +       +   +   E 
Sbjct: 28  TTLPITKFPDIAPPT-------------VQVTAVYPGANAEVVARAVATPIEEAVNGVEN 74

Query: 86  IGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           +   +     +    + + F      +  A  V   +    S++  +  +  + T  ++ 
Sbjct: 75  MTYMTSSSNNDGTMALNVYFKQGTDPDIAAVNVQNRVSKAVSQIPQEVVQAGISTQKQQN 134

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
             I+    + +            I    + Q+       Q          +     P RL
Sbjct: 135 SIIMFVALSSEDSTYDETFLLNYIKINLVPQLQRIPGVGQAQPFGTRDYSMRIWLKPDRL 194

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
             L  +  +++      +        G          +Y+++ K +++            
Sbjct: 195 AALGLSPQEVTGAIREQSLEAAPGRLGEASKEV---FEYVLKYKGKLT------------ 239

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
            +  +    I                 +            L     +       A  + N
Sbjct: 240 -QNKEYEDIIIKANSDGSVIRLKDVARVEFGSYTYSSNGKLNGNASSGVAVFQTAGTNAN 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
             +  A  L               +   +      S +  + T      LV IV+F+ + 
Sbjct: 299 DILIQAEKLIEDFSKTLPKGLKTTIMYNSKDFLDESINQVRSTLLEAFILVFIVVFIFLQ 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             +  L+   ++ + ++ T   + L G T+   ++  +VL IG+ VD  I+V E +  + 
Sbjct: 359 DFRSTLIPAIAVPVAIVGTFFFMQLFGFTINFLTLFALVLAIGIVVDDAIVVVEAVHSKM 418

Query: 443 RKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILI 498
            +   +   +     +     I    +      V + F  G      R FA T+ ++ILI
Sbjct: 419 ERTNLAAKSATVESMNEISGAIISITLVMAAVFVPVGFMQGPAGVFYRQFAFTLAIAILI 478

Query: 499 SMFTAISIVRAMMIFIIRYKK 519
           S   A+++  A+    ++   
Sbjct: 479 SALNALTLSPALCALFLKNPH 499



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 84/199 (42%), Gaps = 8/199 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
              +++E   K + + +  + + N++    +   ++    +   I+  I + I++     
Sbjct: 303 QAEKLIEDFSKTLPKGLKTTIMYNSKDFLDESINQVRSTLLEAFILVFIVVFIFLQ---D 359

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L     + + I  T  F  LFG   N   + A++  IG  V+D +VV + +    K
Sbjct: 360 FRSTLIPAIAVPVAIVGTFFFMQLFGFTINFLTLFALVLAIGIVVDDAIVVVEAVH--SK 417

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +  T+++ +    +S+NE  G  +  ++      +P+    G        FA  +A  I+
Sbjct: 418 MERTNLAAKSATVESMNEISGAIISITLVMAAVFVPVGFMQGPAGVFYRQFAFTLAIAIL 477

Query: 807 VAASSSIFIAAPILLFIYD 825
           ++A +++ ++  +      
Sbjct: 478 ISALNALTLSPALCALFLK 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 82/289 (28%), Gaps = 9/289 (3%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
               S   S  +    +   +             +      +          L      F 
Sbjct: 754  YYGSSFVSDFNRFGKYYRVMAQADPLYRQNPASLDGIYVKNTEGEMVPANQLVSLKRVFG 813

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                 +N L       G         + ++        +               E+    
Sbjct: 814  PETVTRNNLYNAVMINGTPKPGYSTGDAIRAVQETAEKVLPNNYKTEWTGMTREEINSGS 873

Query: 670  IVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             + +I     + +Y  +      +   L  I T+ L +   + F    GIE N+     +
Sbjct: 874  QIILIFVLSLVFVYFLLAAQYESYILPLAVILTIPLGVFGVMLFINWMGIENNIYVQVGL 933

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG    + +++   +   ++     +S  +   ++    L   + TS A  + +LP+
Sbjct: 934  IMLIGLLAKNAILI---IEYAVQRRKAGMSIVESALEASRLRLRPILMTSFAFIVGLLPL 990

Query: 787  A-VWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                GGS +   S       G++      +F    + +     + K  +
Sbjct: 991  MRATGGSALGNRSIGTGAVGGMLTGVIFGVFAIPVLYVIFQYLQEKVVK 1039


>gi|187476839|ref|YP_784863.1| multidrug efflux system transmembrane protein [Bordetella avium
           197N]
 gi|115421425|emb|CAJ47930.1| multidrug efflux system transmembrane protein [Bordetella avium
           197N]
          Length = 1060

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/489 (12%), Positives = 135/489 (27%), Gaps = 17/489 (3%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   +   +    +E  + ++             N  +T++F      +     V 
Sbjct: 51  YPGANPKVIAETVASPLEEAINGVEDMIYMQSQANSDGNLTLTVNFKLGMDPDKAQQLVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  D ++  + TT       ++                   I    D++  
Sbjct: 111 NRVSQALPRLPPDVQRLGVTTTKTSPTLTLVVHLISPNDRYDITYLRNYAIINIKDRLSR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    DP ++ Q   T +++       N      + G       
Sbjct: 171 INGVGEATVWGSGNYSMRVWLDPQKVAQRGMTASEVVAAIREQNVQVAAGVIGASPTLSD 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V  +  +                 +    +                 +      
Sbjct: 231 VPLQLNVNARGRLQTEE-------------EFRDIVLKTSPDGGVTHLADVARVELDAQE 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L                +              L     P     +E        
Sbjct: 278 YGLRSLLDNKPAVGMGIMQSPGANALDVATQVRNTMQELSQDFPPGVEYRIEYDPTQFVR 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+ + +   +  ++   ++ ++++ T A L + G ++   S
Sbjct: 338 SSIEAVVHTLLEAIALVVLVVILFLQTWRASIIPLLAVPVSIVGTFAFLLMFGYSINALS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL IG+ VD  I+V E +        S   +           I    +T     V 
Sbjct: 398 LFGMVLAIGIVVDDAIVVVENVERNIAAGLSPREATYRAMREVSGPIIAIALTLCAVFVP 457

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F     G   + FA+T+ +S +IS F ++++  A+   ++R    K   +      FL
Sbjct: 458 LAFMTGLSGQFYKQFAMTIAISTVISAFNSLTLSPALSALLLRGHHDKPDWLTRQMNRFL 517

Query: 534 IPDCIAIQF 542
                A   
Sbjct: 518 GRFFAAFNR 526



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  I  + + I   L    L G + N+      + L+G S  + +++ +  R+  
Sbjct: 902  SLALPLAVILIVPMSILAALTGVWLTGGDNNIFTQIGFMVLVGLSAKNAILIVEFARE-- 959

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L     +  +   ++    L   + TS+A  + V+P+ +    G  +  +  + + FG+
Sbjct: 960  -LEMQGSTPLEAAIEASRLRLRPILMTSIAFIMGVVPLVLSSGAGSEMRHAMGVAVFFGM 1018

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
            +      +F+     + +     + 
Sbjct: 1019 LGVTLFGLFLTPVFYVVLRTLSKRK 1043



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 57/127 (44%), Gaps = 6/127 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T  F  +FG   N  ++  ++  IG  V+D +VV + + +N+ 
Sbjct: 365 WRASIIPLLAVPVSIVGTFAFLLMFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIA 424

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                +S R+   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 425 A---GLSPREATYRAMREVSGPIIAIALTLCAVFVPLAFMTGLSGQFYKQFAMTIAISTV 481

Query: 807 VAASSSI 813
           ++A +S+
Sbjct: 482 ISAFNSL 488


>gi|218705611|ref|YP_002413130.1| multidrug efflux system subunit MdtC [Escherichia coli UMN026]
 gi|293405551|ref|ZP_06649543.1| multidrug efflux system subunit MdtB [Escherichia coli FVEC1412]
 gi|298381235|ref|ZP_06990834.1| multidrug efflux system subunit MdtB [Escherichia coli FVEC1302]
 gi|226700692|sp|B7NCB2|MDTC_ECOLU RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|218432708|emb|CAR13602.1| multidrug efflux system, subunit C [Escherichia coli UMN026]
 gi|291427759|gb|EFF00786.1| multidrug efflux system subunit MdtB [Escherichia coli FVEC1412]
 gi|298278677|gb|EFI20191.1| multidrug efflux system subunit MdtB [Escherichia coli FVEC1302]
          Length = 1025

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWGLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|167918329|ref|ZP_02505420.1| multidrug resistance protein MdtB [Burkholderia pseudomallei
           BCC215]
          Length = 1036

 Score =  155 bits (391), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|229491968|ref|ZP_04385785.1| protein-export membrane protein SecD [Rhodococcus erythropolis
           SK121]
 gi|229321100|gb|EEN86904.1| protein-export membrane protein SecD [Rhodococcus erythropolis
           SK121]
          Length = 573

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 116/543 (21%), Positives = 203/543 (37%), Gaps = 38/543 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FV 66
           L      +  L AL            P         LG+DL+GG+ + L     D     
Sbjct: 14  LALFGVLVVALYAL--VFFTGDKSATP--------KLGIDLQGGTRVTLTARTPDGSAPS 63

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKEN--IADKVTLFLQGVNS 124
              L+   + + + +   G+    +    + + ++       +   +     L+++ V  
Sbjct: 64  QDSLKQAQEIIETRVNGLGVSGSEVVVDGDNLVITVPGDDSAQARSLGQTARLYIRPVTG 123

Query: 125 KLN-----------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            ++            +        T               Q      +           Q
Sbjct: 124 SIDVATRDANRTATPEAPAAETPATDAPAPEAPADGTQTPQNRPFLAQDPTTPDATPAPQ 183

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK-------KGF 226
                 T                +  +       +   +    V   +            
Sbjct: 184 TTTPAPTGDAPSDGTDEGDAAAAEIAAARALRQSSDPTVQQQAVANLDCSVADPLRGNDD 243

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                     DG    +     I G  +  A++ F+ +  +  + +SF   G+  + E T
Sbjct: 244 PTLPLVACSQDGLNIYLLGPSIIDGQEIADASSVFNSQQSRHEISLSFKTTGSNTWAEFT 303

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
             NIGK  A  LD +V++AP I  A P      I+G+FT E+A  LA  L+ GSLP+   
Sbjct: 304 SANIGKQAAFTLDSKVVSAPTIQGATPAGSATSITGSFTAESAKELANTLKYGSLPLSFA 363

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
             E   V A LG  S+     A   GLVL++L+ +V Y   G++   S+ L+ ++  A++
Sbjct: 364 ASEAETVSATLGLASLQAALIAGAVGLVLVLLYCLVYYRMLGVLTALSLILSGVMVYAIM 423

Query: 406 SLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
            LL    G TL L  +AG+++GIG+  DS ++  ERI++E R+ +S   ++  G++RA  
Sbjct: 424 VLLGRYIGFTLDLAGMAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWARARR 483

Query: 462 TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           TI   N  + IA  VL+    G VRGFA T+GL+ ++ +     +   ++    R     
Sbjct: 484 TILSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTILDVIVVFLVTWPLVSMASRSAFWS 543

Query: 522 SID 524
              
Sbjct: 544 KPS 546



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 7/135 (5%)

Query: 692 FALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +    +LIL          L G       +L  +A ++  IG + +  VV ++R++  
Sbjct: 404 LGVLTALSLILSGVMVYAIMVLLGRYIGFTLDLAGMAGLIIGIGMTADSFVVFFERIKDE 463

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SFR  + +         +  +  +FI+   + V     +  FA  +    ++
Sbjct: 464 MRE---GRSFRSAVPRGWARARRTILSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTIL 520

Query: 808 AASSSIFIAAPILLF 822
                  +  P++  
Sbjct: 521 DVIVVFLVTWPLVSM 535


>gi|213647397|ref|ZP_03377450.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 672

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSSVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRKLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSRQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 62/164 (37%), Gaps = 7/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G +   FA+ +A  I+++A  S+ +   +   +   ++   
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSRQSLRK 506


>gi|255658409|ref|ZP_05403818.1| putative outer membrane efflux protein [Mitsuokella multacida DSM
           20544]
 gi|260849744|gb|EEX69751.1| putative outer membrane efflux protein [Mitsuokella multacida DSM
           20544]
          Length = 1029

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/667 (10%), Positives = 182/667 (27%), Gaps = 65/667 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++ +    +GL         +  ++  P+                 ++ + V 
Sbjct: 9   KRPVGISMIVAFFVVLGLYS-----YYRIGVELLPALNTP-------------YVTVSVK 50

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++       ++  + +        +    + ++TL    S   +  A   + 
Sbjct: 51  YPGASAESVEQEVVKPVEDALASVSGVKKITSTASYERARVTLELDFSTDADTAAIDASK 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++ + +KL  +    +++        +V      +  ++     +  +  + + Q G  
Sbjct: 111 KVEAIANKLPDEADSPVVIKRDMNAKPVVELAVLSNHSLADTYTATDNVFTEVLQQAG-- 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +         ++  + D  ++     T AK++      N             +   
Sbjct: 169 -GVSEVELHGGRDKEVAIDVDREKMAAYKLTLAKIASAIKNENQLVPSGSVFTETTKSDV 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +   +I                      I       +         + +  A  
Sbjct: 228 RVVAQFQKPSDIE--------------------KIQVQNTAGKMIPLTAVAQVREREART 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           +    L        +    +  +   T +        LR      +  +V          
Sbjct: 268 VRYGRLNGEDAINVLIYKNSDANVVETADNIMKSVEKLRKTYPDYQFVVVSND-ADYVRD 326

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T          VLF+ +   +       +I  ++I T  ++ L G T  + S+
Sbjct: 327 SLHSTMNTLIEGLITTGFVLFLFLRGWRSTAAVMIAIPTSLISTFFVMYLAGFTFNMMSL 386

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM---GFSRAYSTIFDSNITALIAT 474
            G+ L +G+ VD +I+V E I    +  ++   + +        A   I   +    +  
Sbjct: 387 MGMTLCVGILVDDSIVVLENIVRHLKMGEAPDTAAEKGRTEIGMAAIAITLCDAAVFMPI 446

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-------SIDINP 527
             +    G   R F +T+  + L S+F + ++   +     R             +D   
Sbjct: 447 AFMQGMTGQYFRQFGLTIVFAGLFSLFVSFTLTPMLASRFFRKGYHPGTNRAFAFMDRVE 506

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                L  + +       +   V I  +F      +         +         +    
Sbjct: 507 ERAQRLYVEILNWSLRHTKKLLVSILAVFVAVVALVPLGFVGMEYMPQTDESSFTINIQA 566

Query: 588 PVD---------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           PV             +   L  L           G   +  R++ Q  D   ++R +  V
Sbjct: 567 PVGSSPEETNRVAERIEGKLAELPEVKYYMTQAGGSTAYEGRIKVQLVDRRERSRTVWQV 626

Query: 639 KKKITEI 645
              + + 
Sbjct: 627 ANDVRKF 633



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 74/241 (30%), Gaps = 1/241 (0%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           Q+   A + + L+ V    E         +    +   ++  +    + V     +    
Sbjct: 243 QVQNTAGKMIPLTAVAQVREREARTVRYGRLNGEDAINVLIYKNSDANVVETADNIMKSV 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           +K+ +  P             +   L       +        +       W      +  
Sbjct: 303 EKLRKTYPDYQFVVVSNDADYVRDSLHSTMNTLIEGLITTGFVLFLFLRGWRSTAAVMIA 362

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +   +  T     L G  FN+ ++  +   +G  V+D +VV + + +++K+     +  +
Sbjct: 363 IPTSLISTFFVMYLAGFTFNMMSLMGMTLCVGILVDDSIVVLENIVRHLKMGEAPDTAAE 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
                I            A F+ +  M    G     F + + F  + +   S F   P+
Sbjct: 423 KGRTEIGMAAIAITLCDAAVFMPIAFMQGMTGQYFRQFGLTIVFAGLFSLFVS-FTLTPM 481

Query: 820 L 820
           L
Sbjct: 482 L 482



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 72/210 (34%), Gaps = 21/210 (10%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             V   VKK          +            E   + +  + ++ + + + + + ++   
Sbjct: 824  AVTSDVKKAFATADLGPNVTYQFKGQATRMNETFSELLSALFLALVLIYMLLAVLYESTI 883

Query: 693  -ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG-------YSVNDKVVVYDRM 744
                 + +L L +  ++    +     NL ++  +L + G         ++  + + DR 
Sbjct: 884  TPFIRMFSLPLGLIGSILLLFITHNTLNLFSMIGILVMDGIVAKNGTLLIDYTLTLMDR- 942

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
                       S  + + ++    L     T++   + + PMA+    G     S A  +
Sbjct: 943  ---------GHSALEAVIEAGRVRLKPIFMTTITMMVGMTPMALAMTPGSESRVSMAWVI 993

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G++ +   ++ +   I LF  + + K  
Sbjct: 994  IGGLLTSTVFTLIVIPIIFLFFANHKKKKK 1023


>gi|148977913|ref|ZP_01814466.1| putative multidrug resistance protein [Vibrionales bacterium
           SWAT-3]
 gi|145962859|gb|EDK28131.1| putative multidrug resistance protein [Vibrionales bacterium
           SWAT-3]
          Length = 1037

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/595 (10%), Positives = 168/595 (28%), Gaps = 26/595 (4%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
            E      +   +    ++  S +        + R   ++IT++F            V  
Sbjct: 51  YEGASATIIESQITSNLEDQLSGISGIDEIESTTRNGMSRITITFELGYDLNTGVSDVRD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +    ++        + V    +  +      + +    R  ID+  + 
Sbjct: 111 AVARAQRSLPDEADDPIVYKNNGSGEASVYINLSSTE--MDRTQLTDYTERVLIDRFSLI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                   S  +   +  +  P+ +     TT+ ++      N    G            
Sbjct: 169 SGVSSVDISGGLYKVMYVKLKPAEMAGRGVTTSDITSALNNENIESPG------------ 216

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                   +V    I ++  TA    +       +          +     ++       
Sbjct: 217 -------GEVRNDAIVMSVRTARSYTEAEDFEYLVVKRASDNTPIYLKDVADVYIGAENE 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                    V        ++  +     +        ++          V+  +      
Sbjct: 270 NSTFKSDGVVNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDR 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S    T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++
Sbjct: 330 SISEVYSTLFITGGLVILVLYVFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + +
Sbjct: 390 MALILSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPI 449

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFF 532
            F  G        F++ + +S++ S   A+++   +   I++     +            
Sbjct: 450 SFMDGMVGLLFTEFSVLLAMSVIFSSLVALTLTPVLGSKILKANVKPNRFNLFVERVFGK 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L     ++      +      I+ +           +   +  +    +     R  D +
Sbjct: 510 LESGYRSVLRRALNWRWAAPIIIIACLGGSYGLMQQVPAQLTPQEDRGVIFAFVRGADAT 569

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  ++ I +       G+          P            V   + +   
Sbjct: 570 SYNRMSANMDIVEERLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWDE 624



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 92/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++         + +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDAIVMSVRTARSYTEAEDFEYLVVKRASDNTPIYLKDVADVYIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V ++V K++  I           V    +  + R        +
Sbjct: 279 VNVSMGIVPQSDANPLEVADLVHKEVEAIQKFLPDGTRLAVDYDSTVFIDRSISEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++Y++I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYVFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLVALTLTPVLGSKILKANVKPNR 498



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 68/221 (30%), Gaps = 6/221 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             K   + ++    +       L+ + ++  E +P     +                +V  
Sbjct: 799  NKQKSITIKANLMEGYTLGEALDFLDEQAIEQLPGDISVSYSGESKDFKENQSSILVVFA 858

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   +A L+       +   L  + T+ + I        +     N+ +   ++ LIG  
Sbjct: 859  LAMLVAYLVLAAQFESFINPLVVMFTVPMGIFGGFLGLVVMSQGLNVYSQIGMIMLIGMV 918

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ +      +L    I F   I  +    L   + T+       +P+      G
Sbjct: 919  TKNGILIVEFAN---QLRDRGIEFEKAIIDASARRLRPIMMTAFTTLAGAIPLITSTGAG 975

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 +    + FG+  A   ++F+   +   I        
Sbjct: 976  YESRVAVGTVIFFGMGFATLVTLFVIPAMYRLISGTTRSPG 1016


>gi|33866688|ref|NP_898247.1| RND family multidrug-efflux transporter [Synechococcus sp. WH 8102]
 gi|33633466|emb|CAE08671.1| putative RND family multidrug-efflux transporter [Synechococcus sp.
           WH 8102]
          Length = 1143

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/525 (13%), Positives = 147/525 (28%), Gaps = 33/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I  +GL+       P   ++  P   P                     +
Sbjct: 10  RPVLSTVCSLLIVIVGLIAI-----PILPIENLPDIAPPTV---------KVQSTYVGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++    I   S     + I++SF            V   +  
Sbjct: 56  AVAVEQGVTSVLEQQINGVENMDFITSNSSSDGVSSISVSFESGTDGNINQVNVQNRVSL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQIGISE 178
              +L  + +K+ +         +++     +            S  + +   D +   +
Sbjct: 116 AEPQLPEEVRKSGVTVNKASNSILLVYNFVNEDPSKTEYSVETISGYLDKNLTDNVKRVK 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                       I      DP +L     +   +       N        G     +   
Sbjct: 176 GVGDVTYFGNRKIAFRLWLDPEKLTANNLSATDVVQQLKSQNRLVPAGKIGGAPAPEGQE 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + V+ +  ++ +                 + +   + G     +             +
Sbjct: 236 YTFTVQLQGRLTTVQEFEN------------IVLRTTDAGGLVRLKDVGRVELGGETYGI 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D   L             +  +          +  +                       S
Sbjct: 284 DAMDLKGTPSVGIAIYQLSGSNAIEVSNGVKDVLDVFEKTLPVGLGVQKIYDTTDFINQS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 +      LV+++LF+ +   K  LV   +I + +I T AL+   G +L   ++ 
Sbjct: 344 IKGVTNSLRDAVILVVLILFLFLQNWKATLVPAIAIPVALIGTFALVLAFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           G+VL  GL VD  I V E    +  +  +   +        +   I  S +   +   VL
Sbjct: 404 GLVLATGLVVDDAITVVEDTSAKKAEGMTSVQAAMETMDELFGAVIATSLVKMAVFLPVL 463

Query: 478 FFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           FF G  G   + FA T+  SI IS F A++    +   ++  +  
Sbjct: 464 FFPGATGTIYKQFAATILFSIGISTFNALTFSPMLSALLLSRETK 508



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T      FG   N   +  ++   G  V+D + V +       
Sbjct: 369 WKATLVPAIAIPVALIGTFALVLAFGFSLNQLTLFGLVLATGLVVDDAITVVE---DTSA 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
                ++      ++++E  G  + TS+      LP+  + G    I   FA  + F I 
Sbjct: 426 KKAEGMTSVQAAMETMDELFGAVIATSLVKMAVFLPVLFFPGATGTIYKQFAATILFSIG 485

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
           ++  +++  +  +   +     K
Sbjct: 486 ISTFNALTFSPMLSALLLSRETK 508



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 84/244 (34%), Gaps = 10/244 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V  S       S               +F +    +   +  +          + +I  
Sbjct: 881  YVPNSQGEQVPLSEFFTVKQTVGPSVIPHFNLYRSIKIEGTPNEGNSSGQAIGAMKQIFN 940

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVII---SAIAMLIYIWIRFKWYF-ALGAITTLILD 703
              + Q        ISRE ++ G + V+I     +A+ + +  +++ Y   +  + T+   
Sbjct: 941  TGSYQGLGFDWTGISREEVKAGSLAVVIFALGILAVFLVLSAQYESYSDPIIILLTVPTA 1000

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +   L F    G   N+ A   ++ LIG +  + +++ D      +      S  +    
Sbjct: 1001 LLGALVFLGGAGQVLNIYAQVGLVMLIGLAGGNAILIVD---LANQKMGEGESALEAAKF 1057

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            S    L   + T++++    LP+ +    G     S  + +  G++VA   S  +     
Sbjct: 1058 SAKSRLRPILMTAISSLTGFLPLMLASGAGAQSQSSLGLVVFGGLLVATFLSTLVVPVFY 1117

Query: 821  LFIY 824
            + + 
Sbjct: 1118 VVLK 1121


>gi|217979510|ref|YP_002363657.1| acriflavin resistance protein [Methylocella silvestris BL2]
 gi|217504886|gb|ACK52295.1| acriflavin resistance protein [Methylocella silvestris BL2]
          Length = 1044

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/587 (11%), Positives = 162/587 (27%), Gaps = 42/587 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++   +   GL+  +   +       FP+                    L   
Sbjct: 9   QRPIATILVMVALLVAGLIGYILLPVSALPSVDFPTIS--------------VSAQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +   + +        +       ITL F  SR  +  A  V   +  
Sbjct: 55  DPKTMASAVAQPLERQFAQIPGVNQITSASVLGTTNITLQFDLSRNIDGAAGDVQQAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +                +L    +        +           +I   +   
Sbjct: 115 AQGFLPKNLPNPPTYRKVNPADQPILI-LGLTSDSMPLTQVDQFADLDIAQRISTLDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +         +P  L        +++   +    +                   
Sbjct: 174 QVSIFGQQKYAPTVLINPLSLAARGIGLDEIASAVMATTANLPVGSLQGPTQAYQIATNG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                         +                    +   +   L   
Sbjct: 234 QL--------------------FLPAQIAKAIVTYRNGAPVRIGDVAQVVAGVDSPLQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +   +    ++    +   L+AG  P     +      +   S S 
Sbjct: 274 WVGEHRGEMIGIWRQPGANTLELVDRLKSMLPTLQAGVPPAIKLSIVSDRSISIRDSFSD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV++V+F+ +      ++   ++ L+++ T A++  LG +L   S+  + 
Sbjct: 334 VKITLMGTIALVIVVIFVFLREFWATIIPALTVPLSLVGTFAVMFGLGYSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I       +    +   G      TI    I+ +   + L F  
Sbjct: 394 LAVGLVVDDAIVMLENIFRHMEMGKDRVTAALDGSKEIGFTIVSITISLIAVFIPLLFMA 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLI 534
              G   R F +T+ ++I++S F A+++   +   +       K  +   ++      L+
Sbjct: 454 GIVGRLFREFGVTVTVAIVLSAFIALTLSPMIAALVLKNPHSVKHGRLYQMSERGFEKLV 513

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                I  +  R+    + +  ++ +I +     +  G   +    +
Sbjct: 514 SGYEHILKLSLRYRAPVMILNVALIAISIYLFMSMPKGFFPQEDTGM 560



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I+ + ++I++++R +++  +    T+ L +  T       G   +  ++ A+   +G  V
Sbjct: 342 IALVIVVIFVFLR-EFWATIIPALTVPLSLVGTFAVMFGLGYSLDNLSLMALTLAVGLVV 400

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +V+ + +    +                 E     V  +++     +P+    G V 
Sbjct: 401 DDAIVMLENI---FRHMEMGKDRVTAALDGSKEIGFTIVSITISLIAVFIPLLFMAGIVG 457

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD--WRAKNARI 833
                F + +   IV++A  ++ ++  I   +       K+ R+
Sbjct: 458 RLFREFGVTVTVAIVLSAFIALTLSPMIAALVLKNPHSVKHGRL 501


>gi|331663572|ref|ZP_08364482.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli TA143]
 gi|331059371|gb|EGI31348.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli TA143]
          Length = 1025

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATVIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +RS L+ 
Sbjct: 575 MRSKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATVIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|237811649|ref|YP_002896100.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Burkholderia pseudomallei MSHR346]
 gi|237506196|gb|ACQ98514.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Burkholderia pseudomallei MSHR346]
          Length = 1036

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.72,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|121605488|ref|YP_982817.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
 gi|120594457|gb|ABM37896.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
          Length = 1072

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/583 (12%), Positives = 163/583 (27%), Gaps = 34/583 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+L   +   G+       +       FP+                    L    
Sbjct: 10  RPIATVLLTIGLALAGIGAFFVLPVAPLPQVDFPTIS--------------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        S      +I+L F  +R  +  A +V   +   
Sbjct: 56  PSTMASSVATPLERRLGVIAGVNEMTSSSGAGSTRISLQFDLNRKIDAAAREVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N          S V+    +        +   E+      +I        
Sbjct: 116 RADLPATLRSNPTYRKANPASSPVII-LALTSKTRSPGQIYDEVSNLVQQKIAQVSGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E  P  L +   +   +       N ++           +    Q  
Sbjct: 175 VELGGGSLPAVRVELLPFALNRYGVSMEDVRAALQAANANRPRGAIEG----NGQRLQIY 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G+                   +                 +   +       +
Sbjct: 231 ATGSTASGGLRAADYQG------------LIVAWRNGAAIRLSDVAEVSNGVENTNTLGL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    + + +   +   T++    L   L+A         V   +  +   S    
Sbjct: 279 FNGQPAVIVLVTRQPDANVIATVDGVRALLPELQAQLPQDVELRVASDSTNSIRSSLHEI 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+   +   +   +   +  ++++ T  ++ LLG +L   S+  + +
Sbjct: 339 EVTLLISIALVVLVVSAFLRSARATFIPAVATVVSLLGTFGVMYLLGFSLNNLSLMALTV 398

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E            F +  +G      T+   +++ +   + L F GG
Sbjct: 399 ATGFVVDDAIVVLENTSRHIEAGMDRFKAALLGAREVGFTVLSISLSLVAVFIPLLFMGG 458

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R FA+T+  +++IS+  +++    M  ++++ +            F      + 
Sbjct: 459 QTGRLFREFAVTLSAAVMISLVISLTTTPMMCAWLLKPQSAAKPPGRISRAFENAFKRVL 518

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +  A  W +   +L  +  + ++  +   Y    KG     
Sbjct: 519 RGYEIALDWALASKLLVMLILLAVIGLNVYLYIAAPKGFFPQQ 561



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 80/248 (32%), Gaps = 8/248 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS V      ++  +            ++  +    + +A    +  +  ++   +P 
Sbjct: 258 IRLSDVAEVSNGVENTNTLGLFNGQPAVIVLVTRQPDANVIATVDGVRALLPELQAQLPQ 317

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                         R  + +  V ++IS   +++ +                 ++ +  T
Sbjct: 318 DVELRVASDSTNSIRSSLHEIEVTLLISIALVVLVVSAFLRSARATFIPAVATVVSLLGT 377

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G   L G   N  ++ A+    G+ V+D +VV +      +     +           E
Sbjct: 378 FGVMYLLGFSLNNLSLMALTVATGFVVDDAIVVLEN---TSRHIEAGMDRFKAALLGARE 434

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  S++     +P+   GG        FA+ ++  ++++   S+    P++    
Sbjct: 435 VGFTVLSISLSLVAVFIPLLFMGGQTGRLFREFAVTLSAAVMISLVISL-TTTPMMCAWL 493

Query: 825 DWRAKNAR 832
                 A+
Sbjct: 494 LKPQSAAK 501



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             +      + Y        +     V++    I   + ++ +       +++   +  + 
Sbjct: 827  EDSELSTTISYNLAAGSTLSDGQAAVRESEAAIGLPNNVRGSFSGTALSAQQSQGEQPLL 886

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ + + + I + I ++     L  I+TL       L    LF ++ ++ A+  +  LIG
Sbjct: 887  ILAALVVIYIVLGILYESLIHPLTVISTLPSAGVGALLALLLFKMDLSIIALIGIFLLIG 946

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                + +++ D            +S  + + ++        + T++AA +  LP+A+   
Sbjct: 947  IVKKNAILIIDFALD--AERARGLSAVEAVREACLLRFRPILMTTLAAILGALPLAIGFG 1004

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G  +     I +  G++ +   ++     + + +   R ++A
Sbjct: 1005 EGAELRRPLGITIIGGLIASQLLTLLTTPVVYVLLDKLRRRSA 1047


>gi|322437195|ref|YP_004219407.1| protein-export membrane protein SecD [Acidobacterium sp. MP5ACTX9]
 gi|321164922|gb|ADW70627.1| protein-export membrane protein SecD [Acidobacterium sp. MP5ACTX9]
          Length = 535

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 140/530 (26%), Positives = 246/530 (46%), Gaps = 43/530 (8%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            +++  +    G++      L QS+ D         RI LGLDL+GG HLVL V  ++ V
Sbjct: 11  AIVVVLLFFIYGIIGIPHGSLKQSIAD---------RIHLGLDLKGGIHLVLAVHVEEAV 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQ----NKITLSFADSRFKENIADKVTLFLQGV 122
                     L + L   G+   ++ +      + IT++        ++   V       
Sbjct: 62  ASTTDRDVQRLEAALPAGGVTGATVGKSDPAHQDIITITGVPVGQMSSLRTLVG------ 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                 D       +  +  + + +    I  + +  +E S+E IRQR+D +G+SE TIQ
Sbjct: 116 ----GNDYASYEASSQPDGSMRLTMKPTAISDLEARTLETSIETIRQRVDSLGVSEPTIQ 171

Query: 183 RLGSH--RILIQLPGEQDPSRLRQLLGTTAKMSFHKV---------------LPNNSKKG 225
           + G    ++L++LPG  +   + Q + +T+K++ + V                       
Sbjct: 172 KYGLGDNQVLVELPGIANADEVEQAIQSTSKLAVYAVVSGPYESEQAAMTTLNNVIPPDA 231

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
            +   +   +S    +L+    E+ G     A+   D      +      E G R +   
Sbjct: 232 TLVHGQSTPNSPDQVWLLNRASEVEGTDFRDASGGTDVNGRPNIHFTLTTEAGDRFYKYT 291

Query: 286 TRDNIGKPLAVVLDG---RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
                G P    +       +            + +I+G FT      L+ MLR G+LP 
Sbjct: 292 DAHKTGSPTPGSMAIVLGNKVREVASINGAIRDQGEITGTFTQAEVDNLSLMLRTGALPA 351

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
            ++ +E R VG  LG+ SI +G  A V G+  +++FM++ Y   G+ AD ++ LN+++ L
Sbjct: 352 SISYLETRTVGPSLGAASIRQGVIAAVVGMAAVMIFMLIYYKGSGINADLALLLNLLILL 411

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
             +    ATLTLP IAG++L IG+ VDSN+L+ ERIREE R  ++   ++  GF+ A+ T
Sbjct: 412 GFMGYSHATLTLPGIAGVILTIGMGVDSNVLIFERIREELRAGKTAAAAVKEGFAHAWIT 471

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           I D+++T +++  +LF FG G V+GFA+T+   +L ++FTA+ + R +  
Sbjct: 472 IVDTHVTTIVSAAILFLFGTGPVKGFAVTLTFGLLANLFTAVYVSRLIFD 521



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 78/163 (47%), Gaps = 4/163 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +    IR+G++  ++   A++I++ I +K    + A   L+L++   LGF       
Sbjct: 362 GPSLGAASIRQGVIAAVVGMAAVMIFMLIYYK-GSGINADLALLLNLLILLGFMGYSHAT 420

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A V+  IG  V+  V++++R+R+ ++      +    + +         V T +
Sbjct: 421 LTLPGIAGVILTIGMGVDSNVLIFERIREELRA---GKTAAAAVKEGFAHAWITIVDTHV 477

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              +S   + ++G   +  FA+ + FG++    ++++++  I 
Sbjct: 478 TTIVSAAILFLFGTGPVKGFAVTLTFGLLANLFTAVYVSRLIF 520


>gi|218262812|ref|ZP_03477170.1| hypothetical protein PRABACTJOHN_02850 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223107|gb|EEC95757.1| hypothetical protein PRABACTJOHN_02850 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1042

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/641 (11%), Positives = 176/641 (27%), Gaps = 47/641 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +++  I   GL       L +  +D  P       +                 
Sbjct: 9   KKPVTTALVFVAIVIFGLFS-----LTRLSVDLLPEIETNTIM---------VMTSYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +          R+  + ITL F      +   + V   L  
Sbjct: 55  SAADIEMNVSKPLENVLNSVSDLKHITSQSRENISIITLEFDYGTDIDVATNDVRDKLDV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D    ++      +I I++     ++  +   +       +  + +       
Sbjct: 115 AEPMLPDDVDNPIIFKFGTNDIPIIILSVTAEESTNALYKILD---DKVSNPLARISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP +L     +   +S      N +  G    +     +   Q 
Sbjct: 172 AVSISGTPTREIQVYCDPYKLEAYGVSIEGISAIIAQENRNTPGGSVDIGSNAYALRVQG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D  ++  + +                         +  +      I   +       
Sbjct: 232 EFTDAHQMDDLVIG--------------------HKDNKTIYLRDVARIEDSIEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        ++          V        L +   
Sbjct: 272 YNNGKKGGMIVIQKQSGANSVNIAKKVHQKLPEIQKSLPSDVKLGVIMDTSTNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  I   +V++V+F+ +   +   +   +I +++I + A L   G TL + S++ + 
Sbjct: 332 LKETIFITFVIVMLVVFVFLGRWRATFIIILTIPISLIASFAYLLASGNTLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG+ VD  I+V E I     +  +   +     +    ++  S +T L   + L    
Sbjct: 392 IAIGMVVDDAIVVLENITTHIERGSAPKQAAVHATNEVAISVIASTLTMLAVFLPLTMVT 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI-------DINPLSRF 531
              G   +     + + +++S   A+++   +   +++    K          I      
Sbjct: 452 GMAGILFKQLGWIVSIIMIVSTVGALTLTPMLSSQLLKQNPKKGRLYTLFFTPIEKALDA 511

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                   + +       V            LL           +   Q+ V    PV  
Sbjct: 512 LDRGYSNFLYWAVRHRKTVIFGATLIFAGSMLLVPTIKTEFFPTQDNAQISVHIELPVGT 571

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               +   +L+I ++  Q +   K           D+    
Sbjct: 572 RQDITRKLALEIDELFRQKYPEIKTSNFTEGQADSDNTWAQ 612



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 99/281 (35%), Gaps = 7/281 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +   L   G          + +G   N+ + L  V    +S++       N   +  
Sbjct: 220 IGSNAYALRVQGEFTDAHQMDDLVIGHKDNKTIYLRDVARIEDSIEERAQETYNNGKKGG 279

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +V  +    +SV   + +     +I + +P        +         I      + I+
Sbjct: 280 MIVIQKQSGANSVNIAKKVHQKLPEIQKSLPSDVKLGVIMDTSTNILNTIDSLKETIFIT 339

Query: 677 AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            + +++ +++   +W      I T+ + +  +  +    G   N+ +++++   IG  V+
Sbjct: 340 FVIVMLVVFVFLGRWRATFIIILTIPISLIASFAYLLASGNTLNIISLSSLSIAIGMVVD 399

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI 794
           D +VV + +           + +     + NE     + +++      LP+  V G + I
Sbjct: 400 DAIVVLENI---TTHIERGSAPKQAAVHATNEVAISVIASTLTMLAVFLPLTMVTGMAGI 456

Query: 795 --GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                   ++  ++V+   ++ +   +   +     K  R+
Sbjct: 457 LFKQLGWIVSIIMIVSTVGALTLTPMLSSQLLKQNPKKGRL 497



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 59/154 (38%), Gaps = 18/154 (11%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             I F   FA   I          LG  A+      + A+  ++ L+G  V + +V+ D  
Sbjct: 892  VIMFSIPFAFTGII---------LGL-AITQTPLGVMALIGLIMLMGIVVKNGIVLID-- 939

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
               +      +     +  +    L   + T++   + ++PMAV    G  +  S  + +
Sbjct: 940  -YTILCRERGMGILTAVVTAGKSRLRPVLMTTLTTVLGMIPMAVGTGEGSEMWRSMGMTV 998

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW--RAKNARI 833
            A+G+ V+   ++ I   +         R ++ ++
Sbjct: 999  AWGLSVSTLITLVIVPVVYCVFAGNGVRRRHRKM 1032


>gi|197122262|ref|YP_002134213.1| acriflavin resistance protein [Anaeromyxobacter sp. K]
 gi|196172111|gb|ACG73084.1| acriflavin resistance protein [Anaeromyxobacter sp. K]
          Length = 1041

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/549 (12%), Positives = 152/549 (27%), Gaps = 34/549 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ +     GL+        +  +   P+                    L   
Sbjct: 9   RRPVMTTLVMASFIAFGLVA-----YQKLPVSDLPNVDFPTI---------SVSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        S      +ITL F   R  +  A  V   +  
Sbjct: 55  SPETMASSVATPLERQFSTIAGLAAMNSSSGLGTTQITLEFDLDRNIDAAAQDVQSAISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +      +       + ++   ++        + +         ++       
Sbjct: 115 AGRQLPQNMPSPPTLRKVNPADAPIVY-FSLTSPTLPLSDLNRFAQDVVAQRVATIAGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP  L        + +      N +    +        +     
Sbjct: 174 QVLVYGPQKYAVRIELDPQALAARGIGLDEATAAIAAANPNLPAGLVQGGARAFTVEATG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                    V+                R  +   LA     +
Sbjct: 234 GLMRARD----------------FADVVLAFRNGAPVRVADVGRARAGVENELAAAWLWK 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +     +    L   LRA         +          S + 
Sbjct: 278 DGREQRAIVLAVQRQPGTNTVAVAQAVRQLLPTLRAQLPGAAQLELLYDRSETIEESVTD 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV++V+F+ +      ++   ++ +++I T AL+  LG +L   S+  + 
Sbjct: 338 VKFTLLLTLALVVLVIFVFLRNLPATVIPSLALPVSLIGTFALMFQLGYSLDNLSLMALT 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E +       +  F +   G      TI    I+     + + F G
Sbjct: 398 LAVGFVVDDAIVMLENVVRHMEMGERPFEAALNGSKEIAFTIVSMTISLAAVFLPVLFMG 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+T+G +IL+S F ++++   +    +R  K         +        +
Sbjct: 458 GIVGRLFHEFAVTIGAAILVSGFVSLTLTPMLCSRFLRPGKEAHHGRLYAATERAFEASL 517

Query: 539 AIQFMRARF 547
            I      +
Sbjct: 518 RIYDRGLVW 526



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 56/154 (36%), Gaps = 11/154 (7%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++++R      +     L + +  T       G   +  ++ A+   +G+ V+D +V+ 
Sbjct: 353 IFVFLR-NLPATVIPSLALPVSLIGTFALMFQLGYSLDNLSLMALTLAVGFVVDDAIVML 411

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFA 798
           + +   ++         +       E     V  +++     LP+   GG V      FA
Sbjct: 412 ENV---VRHMEMGERPFEAALNGSKEIAFTIVSMTISLAAVFLPVLFMGGIVGRLFHEFA 468

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + +   I+V+   S+ +       +     +  +
Sbjct: 469 VTIGAAILVSGFVSLTLTP----MLCSRFLRPGK 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 64/155 (41%), Gaps = 7/155 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + + I ++ +      +T L       L    LF +E +L A   ++ L+G 
Sbjct: 864  VMAVLVIYVVLGILYESFAHPFTILTALPFAGLGALVTLLLFRVELSLYAFVGIVMLVGL 923

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   +  +      +  + I ++        + T+MAA +  LP+A+    
Sbjct: 924  VKKNGIMMVDFAVEAQRG---GRTPAEAIREACLVRFRPIMMTTMAALMGTLPIALGFGA 980

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            G        + +  G+V +   ++F+     + + 
Sbjct: 981  GAESRRPLGLAVVGGLVFSQLLTLFVTPVFYVAME 1015


>gi|32471921|ref|NP_864915.1| multidrug resistance protein MexB [Rhodopirellula baltica SH 1]
 gi|32397293|emb|CAD72599.1| similar to multidrug resistance protein MexB [Rhodopirellula
           baltica SH 1]
          Length = 1144

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/596 (11%), Positives = 151/596 (25%), Gaps = 41/596 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      +++  +I  +G L           + +FPS  P               + + V
Sbjct: 6   LHRPALAIVISLLILFMGGLAI-----NVLPISQFPSVAPP-------------SVRVSV 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKV 115
                     +      L   +     +           +  I + F      +     V
Sbjct: 48  SYPGASAKILIDSTMVILEQAINGVPNMRYMLSDATSAGEGTIQVIFEPGTDPDVAVMNV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +Q V + L    ++  ++        ++                        +++I 
Sbjct: 108 NNRVQMVKNNLPPIVEREGIIVMQNMSSMLMYVNVFSTDENVDQNYLYNYSTVNILNEIK 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  E D  R+R        +       +        G      
Sbjct: 168 RIPGVGFASILGNRSYAMRVELDLDRMRAYHIDAEDVMEALAEQSMIGTPGRLGQATGTT 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S   +Y++                       +    I                 I    +
Sbjct: 228 SQTLEYVLT-------------WVGRYTTPEEYDQIILRATPEGEILRLADVATISLGSS 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGA 354
                  +        +       +    IE        ++     P     V       
Sbjct: 275 FYDLYSDIDGLPAAAIVLKQTPGSNAAEVIEKVKAKVEEIKEKQFPPGMDYAVTYDVSNF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S      T      LV +V+++ +   +  L+   ++ +++I T   + + G ++ L
Sbjct: 335 LDASIEKVLHTLFEAFILVSLVVYLFLGDFRSTLIPTLAVPVSLIGTFFFMLMFGMSINL 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++  +VL IG+ VD  I+V E + E+        + +           I    +     
Sbjct: 395 ITLFALVLAIGVVVDDAIVVVEAVHEKMHAKHLGPYQATREVVQEISGAIIAITLVMTAV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + + F  G      R FA+TM +SI+IS   A+S+   +   I++     +        
Sbjct: 455 FIPVTFMTGPVGVFYRQFALTMAMSIVISGVVALSLTPVLCAMILKPLDDNTPRGIIGLL 514

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              +           R     +        +  L    L + +  +          
Sbjct: 515 NRGMQKIAGKYAFVLRALASLLLGFAVGYGVYSLLHIELVHEVISEQVELTNTRIQ 570



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 81/227 (35%), Gaps = 6/227 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L S      S  +       +++       +    +V   V++   +  P         
Sbjct: 270 SLGSSFYDLYSDIDGLPAAAIVLKQTPGSNAAEVIEKVKAKVEEIKEKQFPPGMDYAVTY 329

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFG 715
                    I K +  +  + I + + +      +   L     + + +  T  F  +FG
Sbjct: 330 DVSNFLDASIEKVLHTLFEAFILVSLVVYLFLGDFRSTLIPTLAVPVSLIGTFFFMLMFG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +  NL  + A++  IG  V+D +VV + + + M  +   +       + + E  G  +  
Sbjct: 390 MSINLITLFALVLAIGVVVDDAIVVVEAVHEKM--HAKHLGPYQATREVVQEISGAIIAI 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++      +P+    G V      FA+ MA  IV++   ++ +   +
Sbjct: 448 TLVMTAVFIPVTFMTGPVGVFYRQFALTMAMSIVISGVVALSLTPVL 494



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 76/245 (31%), Gaps = 10/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +     Q  +    + +        + A           I ++  
Sbjct: 879  FVKNEGGEMVPYSAFMRIEKKQGLNEISRYNLYPTAPIQGAPAAGYSSGEAIAAIKQVAA 938

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIA-MLIYIWI---RFKWYFALGAITTLILD 703
             +     +I    +S +  + G   V I  I  + +Y+ +      +   L  +T+L + 
Sbjct: 939  ETLPNGFDIDWQGLSYDEAKSGNTAVYIFLIVVIFVYMVLVGQYESFIIPLAVLTSLPVG 998

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I  +  F    G+  ++     ++ L+G    + +++ +     ++     +S  +   +
Sbjct: 999  IFGSFAFLQSMGLANDVYCQIGLVMLVGLLGKNAILIIEFA---VQRRQEGLSIMEAGIE 1055

Query: 764  SINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
                     + TS A    ++P+    G   I   +       G+++     + +   + 
Sbjct: 1056 GGKLRFRPILMTSFAFIAGLIPLVRATGPGAIGNRTIGTTAVGGMLLGTLVGVLVIPGLY 1115

Query: 821  LFIYD 825
                 
Sbjct: 1116 YLFAK 1120


>gi|264678253|ref|YP_003278160.1| transporter hydrophobe/amphiphile efflux-1 [Comamonas testosteroni
           CNB-2]
 gi|262208766|gb|ACY32864.1| transporter, hydrophobe/amphiphile efflux-1 [Comamonas testosteroni
           CNB-2]
          Length = 1032

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/534 (11%), Positives = 142/534 (26%), Gaps = 19/534 (3%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIA 112
                       +   +    +E  + ++                +T++FA     +   
Sbjct: 3   VRAQYPGANPKVIAETVATPLEESINGVEGMLYMGSQATTDGVMTLTVTFALGTDPDKAQ 62

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
             V   +     +L  + ++  + T        ++                   +    D
Sbjct: 63  QLVQNRVSQAEPRLPEEVRRLGITTVKSAPDLTMVVHMVSPNGRYDIDYLRNYAVLNVKD 122

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           ++   +   Q          +    DP ++ Q   + A +       N      + G   
Sbjct: 123 RLARIQGVGQVQIFGGGDYSMRAWLDPQKVAQRGLSAADVVAAIRGQNVQAAAGVVGASP 182

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                  Q  +  +  +                 +    I                 +  
Sbjct: 183 GLPGVDMQLSINAQGRLQTEE-------------EFGDIIVKTGADGAVTRLRDVARLEL 229

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
             A      +L                +            A L+          +     
Sbjct: 230 GAADYSLRSLLNNDPAVGMGVFQAPGSNALEISANVRSTMAELQKHMPEGVEFRIAYDPT 289

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S      T      LV++V+ + +   +  ++   ++ ++V+ T A+L LLG ++
Sbjct: 290 QFVRASIKSVIQTLLEAVALVVVVVILFLQTWRASIIPLLAVPVSVVGTFAVLHLLGFSI 349

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
              S+ G+VL IG+ VD  I+V E +        S   +           I    +  + 
Sbjct: 350 NALSLFGLVLAIGIVVDDAIVVVENVERNIEAGLSPRQATYRAMQEVSGPIIAIALVLVA 409

Query: 473 ATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINP 527
             V L F     G   R FA+T+ +S +IS   ++++  A+   ++R        +    
Sbjct: 410 VFVPLAFISGLTGQFYRQFAVTIAISTVISAINSLTLSPALSALLLRGHDAPKDALTRGM 469

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                         F R      G           +L  + +  G  +     +
Sbjct: 470 ERVLGGFFRRFNALFRRGSDAYSGGVQRVIGRKALMLVIYAVLVGATWGLFKLV 523



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 85/257 (33%), Gaps = 12/257 (4%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  G +++       V LS +   LE     + + +        +         S    
Sbjct: 746 AEDVGLLKVRSTTGEMVPLSALMK-LEPSFGPERAMRYNGFLAADVNGGPAPGFSSGQAQ 804

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             +E +  +                            ++   I+ + + + +  +++   
Sbjct: 805 AAVERIAAETLPPGIGFEWTELTYQEILAGN----SAVLVFPIAILLVFLVLAAQYESLT 860

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  I  + + +   +    L G + N+     ++ L+G S  + +++ +  R+   L 
Sbjct: 861 LPIAIILIVPMGLLAAMTGVWLSGGDNNVFTQIGLIVLVGLSAKNAILIVEFARE---LE 917

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +      ++    L   + TS+A  + VLP+ +    G  +  +  + +  G++  
Sbjct: 918 FAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGAEMRSAMGVAVFAGMIGV 977

Query: 809 ASSSIFIAAPILLFIYD 825
            +  +F+     + +  
Sbjct: 978 TAFGLFLTPVFYVVLRR 994



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 83/228 (36%), Gaps = 17/228 (7%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                +RS L +     +      G     +    +   +  Q  + E V+ +I      
Sbjct: 231 AADYSLRSLLNNDPAVGMGVFQAPGSNALEISANVRSTMAELQKHMPEGVEFRIAYDPTQ 290

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
               + + V   +   +    +V ++               W  ++  +  + + +  T 
Sbjct: 291 FVRASIKSVIQTLLEAVALVVVVVILFLQT-----------WRASIIPLLAVPVSVVGTF 339

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               L G   N  ++  ++  IG  V+D +VV + + +N++     +S R    +++ E 
Sbjct: 340 AVLHLLGFSINALSLFGLVLAIGIVVDDAIVVVENVERNIEA---GLSPRQATYRAMQEV 396

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            G  +  ++      +P+A      G     FA+ +A   V++A +S+
Sbjct: 397 SGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAISTVISAINSL 444


>gi|33240217|ref|NP_875159.1| preprotein translocase subunit SecD [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33237744|gb|AAP99811.1| Preprotein translocase subunit SecD [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 494

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 131/494 (26%), Positives = 220/494 (44%), Gaps = 54/494 (10%)

Query: 43  RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNK 97
              LGLDLRGGS L LEV      +   +  L+     L   +   G+   S+R    N+
Sbjct: 26  PFQLGLDLRGGSQLTLEVQALNPNEQIKSEQLEAVQSVLDRRVNGLGVAESSLRTIGTNQ 85

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNS--KLNVDPKKNLLVTTTEKEISIVLSQNNIDQV 155
           + L     +     A  +           K+N   +   L     +  +I L +      
Sbjct: 86  LILELPGEQEPSKAARVLGKTALLEFRKQKINTKSEMQRLQRIRSQVNNIDLYKKASKDN 145

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
            S  IE                                         +++      +   
Sbjct: 146 KSELIEN----------------------------------------KKIGEQVNDLRVA 165

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
             L N+S        +  +  +     + +   ++G  L  A    +       V ++F+
Sbjct: 166 LGLANSSLNEHDQIDQIRQKVNSEIVELFEPSSLTGSDLVSAGRRQEQNLTSWEVTLAFN 225

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI-------NQAIPSGKAQISGNFTIETA 328
           + G  +F  +T+   G    + +     +              I  G A ISGNFT E+A
Sbjct: 226 QDGGEKFASLTKSIAGSDRLLGIILDGESISEASVGEQFKVAGITGGSATISGNFTAESA 285

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             L   LR GSLP+ ++IV+ R +G  LG D+I +   A + GL L+ +FM+  Y   G 
Sbjct: 286 RELEVQLRGGSLPLPVSIVQVRTIGPTLGVDNIRRSLIAALLGLSLVAIFMVSFYRLAGF 345

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +A F++    +  +A+ +L+  TLTLP +AG VL IG+AVD+N+L+ ER+++E R+  ++
Sbjct: 346 IAIFALSFYALFNIAIYALIPVTLTLPGVAGFVLSIGMAVDANVLIFERVKDELRRGNTL 405

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             S++ GFS+A+S+I D +IT LI+ + LF+ G G V+GFA T+G+ + IS+FTA+S  R
Sbjct: 406 IRSIETGFSQAFSSIIDGHITTLISCISLFYLGTGFVKGFAATLGIGVFISLFTALSCTR 465

Query: 509 AMMIFIIRYKKMKS 522
            ++ F + YK ++ 
Sbjct: 466 VLLRFFMSYKSLRK 479



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 74/176 (42%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + IR+ ++  ++    + I++   ++      AI  L       +  +AL  
Sbjct: 308 TIGPTLGVDNIRRSLIAALLGLSLVAIFMVSFYRL-AGFIAIFALSFYALFNIAIYALIP 366

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  VA  +  IG +V+  V++++R++  ++      +    I+   ++     +  
Sbjct: 367 VTLTLPGVAGFVLSIGMAVDANVLIFERVKDELR---RGNTLIRSIETGFSQAFSSIIDG 423

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS + +   G   +  FA  +  G+ ++  +++     +L F   +++   
Sbjct: 424 HITTLISCISLFYLGTGFVKGFAATLGIGVFISLFTALSCTRVLLRFFMSYKSLRK 479


>gi|325497897|gb|EGC95756.1| multidrug efflux system subunit MdtC [Escherichia fergusonii
           ECD227]
          Length = 1025

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIVHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDHLRLRFSR 1017



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|238763585|ref|ZP_04624546.1| Multidrug resistance protein mdtB [Yersinia kristensenii ATCC
           33638]
 gi|238698217|gb|EEP90973.1| Multidrug resistance protein mdtB [Yersinia kristensenii ATCC
           33638]
          Length = 1052

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 63/542 (11%), Positives = 146/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPTDLPYPPIYSKVNPADPPILT-LAVTSTALPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEDYRDLIVAYQNGAPVRLQDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           V          S S  
Sbjct: 284 ANTEPAIVLNIQRQPGVNVIATADSIREMLPDLIKSLPKSVDVKVLTDRTTTIRASVSDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELMLAIVLVVMVIYLFLRNAAATIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 347 LMLAIVLVVMVIYLFLR-NAAATIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 82/203 (40%), Gaps = 7/203 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +  V +    I   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 830  EAVNAVTQAEQAIQLPADIMTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPVTILSTLPTAGVGALLALMLTGNELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGTGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F   P++  ++D  A+N+
Sbjct: 1008 QVLTLF-TTPVIYLLFDKLARNS 1029


>gi|213968346|ref|ZP_03396490.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato T1]
 gi|301383477|ref|ZP_07231895.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063276|ref|ZP_07254817.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato K40]
 gi|302129902|ref|ZP_07255892.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213926984|gb|EEB60535.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato T1]
          Length = 1034

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/523 (13%), Positives = 149/523 (28%), Gaps = 42/523 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVD 61
               ++L   I  +G++       P+  +   P A                 +   L   
Sbjct: 15  PVATLLLTFAIVLLGVIA-----FPRLPIAPLPEAEFPT-----------IQVTAQLPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        S       +TL F  ++  +  A +V   +  
Sbjct: 59  SPETMASSVATPLEVQFSAIPGMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINT 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D              S VL   ++   +    E S         Q+   E   
Sbjct: 119 AAGRLPADMPSLPTWRKVNPADSPVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVG 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   + +    +  +  P +L  L  T A +                             
Sbjct: 178 QVFITGQQRPAIRVQAAPEKLAALGLTLADIRLAV--------------------QQTSL 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +          ++  ++N      +    +                 +           
Sbjct: 218 NLAKGALYGKDSISTLSSNDQLFKPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKA 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L+          V          S   
Sbjct: 278 WSGDQQGVNIAIFRQPGANIVETVDRIQRELPRLQEMLPATVDVSVLNDRTRTIRASLHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+ V+ + +      L+    + +++I + A++ L G +L   ++  IV
Sbjct: 338 VEMTLLIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E I       Q +  +   G      T+   + + + A + L F G
Sbjct: 398 VAVGFVVDDAIVVVENIHRHLEAGQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMG 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G   + FA+T   +ILIS+  ++++   +    +R     
Sbjct: 458 GVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMRAPTHN 500



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVETVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPATVDVSVLNDRTRTIRASLHEVEMTLLIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 78/202 (38%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   + I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVRMLDQAKIEIGMPAAIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  V+ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGVVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               ++ ++ I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLTPQEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     + 
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHRR 1021


>gi|167910298|ref|ZP_02497389.1| putative transport system, membrane protein [Burkholderia
           pseudomallei 112]
          Length = 1036

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|53718902|ref|YP_107888.1| putative transport system membrane protein [Burkholderia
           pseudomallei K96243]
 gi|52209316|emb|CAH35261.1| putative transport system, membrane protein [Burkholderia
           pseudomallei K96243]
          Length = 1036

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|329960500|ref|ZP_08298888.1| RND transporter, HAE1 family [Bacteroides fluxus YIT 12057]
 gi|328532730|gb|EGF59517.1| RND transporter, HAE1 family [Bacteroides fluxus YIT 12057]
          Length = 1046

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/665 (12%), Positives = 184/665 (27%), Gaps = 50/665 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+      L    ++++P   P                      
Sbjct: 9   RPILSIVISVVILVAGLI-----GLYALSVEQYPDIAPPTIR---------VSTTYSGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + V   + +  +E  + ++       +       +IT+ F      +  A  V   +  
Sbjct: 55  AEAVQKSVIVPLEEAINGVENMTYMTSTASNTGSAEITVYFKQGSDPDMAAVNVQNKVST 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  K  + T   +   + +      +        +  +      QI       
Sbjct: 115 ATSLLPAEVTKVGVTTMKRQSSMLKIFGLYSPKGTYDETFLTNYLTINVKPQIQRISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P  + Q     + +       N        G       +  QY
Sbjct: 175 EVNVMG-GDYAMRIWLKPEVMAQYELEPSDVETALSSQNIEASTGSIGE---DSKNVYQY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++ +  +                 +    +       R         +           
Sbjct: 231 TLKYRGRLETEQ-------------EFEEIVIKAYDDGRVLKLKDIATVELGAQSYSYTG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +  + +  A  + N  I         L          +           S + 
Sbjct: 278 TVNGAPGSTCMINQTAGTNANEIITNIDKYLDELEETLPEDMEIVELMSTKNFLDASINE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +  L+   SIF+++I T A L + G ++ L ++  +V
Sbjct: 338 VIKTLLEAIILVVLVVYVFLQNPRSTLIPTISIFVSLIGTFAALYVAGFSINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++    +   S + +     S   S I  S +  +   V + F 
Sbjct: 398 LAIGTIVDDAIIVVEAVQTRFDEGYRSPYKASVDAMSGISSAIVTSTLVFMAVFVPVSFM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSI 523
           GG +      F ITM +++ IS   A+++  A+   I                 +   + 
Sbjct: 458 GGTSGIFYTQFGITMAVAVGISAVNALTLSPALCALILRPNEILVEGKRPEFSTRFRMAF 517

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           D               +           + +   +    +  T       +  G I + +
Sbjct: 518 DSAFKRIVLKYKSGTKVFVKHKWLAWSLLGLAVLLLGYLMNTTKTGLVPSEDTGSIFVSL 577

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A     L+   S ++ ++         D               S     ++++      
Sbjct: 578 DAPAGSTLAETASIMDKVEKELKEIPQIDNFNKVAGFGMGSGSGSSHGMFIIKLKHWDER 637

Query: 644 EIVPL 648
           +    
Sbjct: 638 QDEES 642



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 54/132 (40%), Gaps = 5/132 (3%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    ++ + +  T     + G   NL  + A++  IG  V+D ++V + +    + 
Sbjct: 361 RSTLIPTISIFVSLIGTFAALYVAGFSINLLTLFALVLAIGTIVDDAIIVVEAV--QTRF 418

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
                S       +++      V +++      +P++  GG+       F I MA  + +
Sbjct: 419 DEGYRSPYKASVDAMSGISSAIVTSTLVFMAVFVPVSFMGGTSGIFYTQFGITMAVAVGI 478

Query: 808 AASSSIFIAAPI 819
           +A +++ ++  +
Sbjct: 479 SAVNALTLSPAL 490



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/273 (10%), Positives = 78/273 (28%), Gaps = 8/273 (2%)

Query: 560  SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
               ++     +              +     +S      ++     ++  N     N   
Sbjct: 768  YRVIIQAPSDSRKNMQSLDNIFVKTSGGMAPVSQFVKLTKTYGAESLTRFNMFSSINVQG 827

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                          V E+  + +                 +++       I GV I  I 
Sbjct: 828  MPAEGYSSGDVINAVSEVAAQTLP-TGYGYEYSGMTREEEQMAESHDTVIIYGVCILFIY 886

Query: 680  MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             LI   +    +  +  I ++   +  +  F  ++GIE N+     ++ LIG      ++
Sbjct: 887  -LILCALYESVFIPMAVILSVPFGLMGSFLFARIWGIENNIYLQTGLIMLIGLLSKTAIL 945

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + +   +        +S       +        + T++     +LP+      G +   S
Sbjct: 946  MTEYATE---RRQAGMSLTQAAMSAATVRFRPILMTALTMIFGMLPLMFASGVGANGNRS 1002

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +    G+++   + +F+     +       +
Sbjct: 1003 LGVGTVGGLLIGTVALLFVTPAFFIVFQYIEER 1035


>gi|126455284|ref|YP_001065641.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 1106a]
 gi|242316921|ref|ZP_04815937.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 1106b]
 gi|126228926|gb|ABN92466.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 1106a]
 gi|242140160|gb|EES26562.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 1106b]
          Length = 1036

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|56412973|ref|YP_150048.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|81359734|sp|Q5PDW7|MDTB_SALPA RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|226700684|sp|B5BF69|MDTB_SALPK RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|56127230|gb|AAV76736.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093379|emb|CAR58829.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 1040

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSSVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAIRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRKLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCACMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|123968464|ref|YP_001009322.1| preprotein translocase subunit SecD [Prochlorococcus marinus str.
           AS9601]
 gi|123198574|gb|ABM70215.1| preprotein translocase subunit [Prochlorococcus marinus str.
           AS9601]
          Length = 489

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 133/541 (24%), Positives = 233/541 (43%), Gaps = 66/541 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R   WL  +  ++     +  L N+                 + LGLDL+GGS L L++ 
Sbjct: 3   RRQGWLFFIIFLLTL--SVYLLINY----------------PLQLGLDLQGGSQLTLQII 44

Query: 61  -DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLF 118
            +E       L+  +  +   +   G+   +++    +++ L     +     +  +   
Sbjct: 45  KEEGKVTRDELEAVNSVIDKRVNNLGVSESNLQTLGGDQLILELPGEQNPLVASRVLGKT 104

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                                        +Q          ++     I++ I+Q    E
Sbjct: 105 ALLEFR-----------------------TQKEGTSTDLKTLQLQRLSIKELIEQYSFEE 141

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
               +   + + +     +D  +      T+  +            G +  ++   D + 
Sbjct: 142 --KNQNNVNFLKVIQDDLKDIEQELNYSSTSNDLY-----------GKLIEIKKYIDKEI 188

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL---- 294
               ++   ++SG  L  A    +       V ++F   G  +F E+T+   G       
Sbjct: 189 TNLFIK--TDLSGKDLINAGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGTNQLLAI 246

Query: 295 ---AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                 +    +     +  I  G A ISGNF+ E A  L   L+ GSLP+ + IVE   
Sbjct: 247 ILDGESISEASVGNQFSSTGITGGSATISGNFSAENAKELEVQLKGGSLPLPIEIVETNT 306

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +GA LGS +I K   A ++GL+ + +FMI+ Y   G V+  S+ L     LAL SL+  T
Sbjct: 307 IGALLGSKNILKSLYAAISGLIFVGIFMILNYRILGFVSVLSLVLYGFFNLALYSLIPVT 366

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP I+G++L IG+AVD+NIL+ ERIREE  +  ++  S+D GF RA S+I D +IT L
Sbjct: 367 LTLPGISGLILSIGMAVDANILIFERIREELYEGNTLTRSIDSGFQRANSSIVDGHITTL 426

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           ++  VLF  G   V+GFA T+G+ +LIS+FT+++  + ++ F   Y+ ++  ++      
Sbjct: 427 LSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLREKNLYLPKNN 486

Query: 532 F 532
           F
Sbjct: 487 F 487



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 100/259 (38%), Gaps = 4/259 (1%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +  G     +  +      ++   L+   I + S  N               G+  A+  
Sbjct: 224 NSGGEKFAEITKSIAGTNQLLAIILDGESISEASVGNQFSSTGITGGSATISGNFSAENA 283

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
               V+ K   +     I  T  +G  +  + I K +   I   I + I++ + ++    
Sbjct: 284 KELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSLYAAISGLIFVGIFMILNYRIL-G 342

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             ++ +L+L     L  ++L  +   L  ++ ++  IG +V+  +++++R+R+ +     
Sbjct: 343 FVSVLSLVLYGFFNLALYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYE--- 399

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             +    ID          V   +   +S   + + G + +  FA  +  G++++  +S+
Sbjct: 400 GNTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSL 459

Query: 814 FIAAPILLFIYDWRAKNAR 832
             +  IL F   +++   +
Sbjct: 460 NCSKTILRFFTTYQSLREK 478


>gi|123441451|ref|YP_001005438.1| multidrug efflux system subunit MdtB [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122088412|emb|CAL11204.1| AcrB/AcrD/AcrF family membrane protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 1047

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 146/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPNDLPYPPIYSKVNPADPPILT-LAVTSSAIPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEDYRDLIVAYQNGAPVRLQDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           V          S +  
Sbjct: 284 ANNQQAIVLNIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTTTIRASVNDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIVLVVMVIYLFLRNAAATIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSHASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  + ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSAEDYRDLIVAYQNGAPVRLQDVATIEQGAENNKLAAWANNQQAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   V              +  EL+    
Sbjct: 293 NIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTTTIRASVNDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I  + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 349 --LAIVLVVMVIYLFLR-NAAATIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 6/200 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +E V +    I   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 830  EAVEAVTQAEQAIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPVTILSTLPTAGVGALLALMLTGHELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGAGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRA 828
               ++F    I L       
Sbjct: 1008 QVLTLFTTPVIYLLFDKLAR 1027


>gi|254298142|ref|ZP_04965595.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 406e]
 gi|157807306|gb|EDO84476.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 406e]
          Length = 1036

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|119357365|ref|YP_912009.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354714|gb|ABL65585.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chlorobium phaeobacteroides DSM 266]
          Length = 1061

 Score =  155 bits (390), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 69/529 (13%), Positives = 146/529 (27%), Gaps = 43/529 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +GL+        Q  + +FP   P               +++    
Sbjct: 8   RPVLATVISVVIVILGLISI-----KQLPIAQFPDIAPP-------------SVMVTAVY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       L   +   EG+   +     +   KIT++FA     +  A  V  
Sbjct: 50  PGASAETLARSVAPSLEEAINGVEGMTYITSTSGNDGVLKITVNFALGTNPDQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    SKL  D  +  +    +    +++     D                 + +I   
Sbjct: 110 RVAQAQSKLPADVIQRGITVVKQLASMMMVVTLFSDTDNYDETFLQNYAKINLVPEIQRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    +P ++     T  ++S      +       FG   L   +
Sbjct: 170 QGVGLASVFGNRDYSMRIWLNPQKMAAYKLTVPEVSAAIKSQSVDAAPGKFGEGSLEVME 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                     E                  +    +                 I       
Sbjct: 230 YIIKYKGKLKEAG----------------EYENIVVRSNSDGSLLRLKDVARIEFTSYDF 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +             A  + +        +               V          
Sbjct: 274 SVNTKVNGKPAVAMAIYQTAGSNADAVQTELYKVVEAASKSFPEGISYAVPLSTKKPLDE 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   S+ + +I T   +SL G ++ L ++
Sbjct: 334 SIEQVLHTLVEAFILVFLVVFVFLQDFRATLIPAISVPVAIIGTFFCMSLFGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIA 473
             +VL IG+ VD  I+V E +  +                   + A  +I     +  + 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVYAKMEGEHLASKPATVLAMSEITGAIVSITLVMSSVFLP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             ++    G   R FA+T+  +I IS   A+++  A+ +  ++    + 
Sbjct: 454 VALMGGSTGVFYRQFALTLASAIFISAINALTLSPALCVIFLKNSHGQK 502



 Score = 45.8 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 23/278 (8%), Positives = 80/278 (28%), Gaps = 15/278 (5%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                 ++ +   +              ++  +      ++L+ +   +            
Sbjct: 770  KYYRVMMQSEPRDRTDPSTLNSIFVRNSSGSMVPVASVASLKRVYGSETVDHFNLFNSIG 829

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +     +   +    + +E V  K          +       K      +      I   
Sbjct: 830  VTANVKKGYSTGQAIQAIEEVSPKALPPGFTLDWKGMSREEIKSGGAATQ------IFIL 883

Query: 678  IAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              + +Y+ +      +   L  + ++   +   +      G++ N+    +++ LIG   
Sbjct: 884  SIVFVYLLLAAQYESYILPLAVMLSIPSGLFGVMLGVKAGGMDNNIYVQVSIIMLIGLLA 943

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
             + +++ +     ++   + +   +   +     L   + TS A  + +LP+    G   
Sbjct: 944  KNAILIVE---YAIQRRRSGVGLVESAIEGSKARLRPILMTSFAFIVGLLPLLWASGPSA 1000

Query: 795  ---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                S       G++      + I   + +     + +
Sbjct: 1001 LGNRSIGWSAVGGMLSGVVLGVLIIPVLFVVFQAIQER 1038



 Score = 43.5 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 31/142 (21%), Positives = 65/142 (45%), Gaps = 9/142 (6%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L    ++ + I  T    +LFG   NL  + A++  IG  V+D +VV + +    
Sbjct: 359 DFRATLIPAISVPVAIIGTFFCMSLFGFSINLLTLFALVLAIGIVVDDAIVVVEAV--YA 416

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAF 803
           K+    ++ +     +++E  G  V  S+   +    LP+A+ GGS       FA+ +A 
Sbjct: 417 KMEGEHLASKPATVLAMSEITGAIV--SITLVMSSVFLPVALMGGSTGVFYRQFALTLAS 474

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            I ++A +++ ++  + +    
Sbjct: 475 AIFISAINALTLSPALCVIFLK 496


>gi|327394468|dbj|BAK11890.1| multidrug resistance protein MdtC [Pantoea ananatis AJ13355]
          Length = 980

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/597 (11%), Positives = 153/597 (25%), Gaps = 24/597 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +     +        +      +I + F   R     A 
Sbjct: 2   VSASLPGASPETMASSVATPLERSLGRIAGVSEMTSTSSLGSTRIIMVFDFDRDINGAAR 61

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    S L                 + ++    +   +    +       Q   +
Sbjct: 62  DVQAAINAAQSLLPTGMPSRPTYRKANPSDAPIMI-MTLTSDLYSPAQLYDYASTQLAQK 120

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +               L  +    +P  L     +   +       N  +          
Sbjct: 121 LSQINGVGDVTVGGSSLPAVRVALNPQALFNQGVSLDAVRQTISNANQRRPQGAVED--- 177

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                            G        N   +T      +                 +   
Sbjct: 178 -----------------GQQRWQLRTNDALQTASEYQPLVVHYNNGAAVRLSDVATVQDS 220

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +  V +  +         +    A  +   T++        L           V +    
Sbjct: 221 VQDVRNAGMSRGKPAVLLVIRKTADANVIETVDRIRAELPELHEIIPAAINLEVAQDRSP 280

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + +  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L 
Sbjct: 281 TIRASLEEVEQSLMIAVALVILVVFVFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLN 340

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I+V E I            +   G      T+   +++ +  
Sbjct: 341 NLSLMALTIATGFVVDDAIVVLENIARHVEAGMKPMAAALKGVREVGFTVLSMSLSLIAV 400

Query: 474 TVVLFFFGGGAVRGFA---ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L   GG   R FA   IT+ ++ILIS+F ++++   M  ++++    +S        
Sbjct: 401 FLPLLMTGGLIGRFFAEFSITLSVAILISLFVSVTLTPMMCAYLLKPHAPRSQPQRRGVG 460

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+                   +L  +     L               Q     +  + 
Sbjct: 461 RLLLAVQRGYARSLTVVLNHARWVLLLLLGTVALTVWLFISIPKTFLPEQDTGRLSGFIS 520

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                S        +   +    + +    + +  G       +   +K        
Sbjct: 521 ADQSISFQAMRGKLEDFMKIVGADPDVSSVVGFTGGMRTNMGLMFISLKPLSERKDT 577



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 88/233 (37%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V +  +S+Q    +  +       LV  +    + +     +     ++ EI+P 
Sbjct: 209 VRLSDVATVQDSVQDVRNAGMSRGKPAVLLVIRKTADANVIETVDRIRAELPELHEIIPA 268

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKT 707
           +             R  + +    ++I+   +++ +++  +     L     + + +  T
Sbjct: 269 AINLEVAQDRSPTIRASLEEVEQSLMIAVALVILVVFVFLRSGRATLIPAVAVPVSLIGT 328

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   N  ++ A+    G+ V+D +VV + +    +     +       K + E
Sbjct: 329 FAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---ARHVEAGMKPMAAALKGVRE 385

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
                +  S++     LP+ + GG +      F+I ++  I+++   S+ +  
Sbjct: 386 VGFTVLSMSLSLIAVFLPLLMTGGLIGRFFAEFSITLSVAILISLFVSVTLTP 438



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 95/216 (43%), Gaps = 6/216 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            + +   + V+ ++  E +++ +T +   S+++ +     +  ++     +  ++ +  A
Sbjct: 758 TISFNLPEGVSLSQASEAIERTMTALGVPSSVRGSFAGTAQAFQQSQSSQLWLMLAAIAA 817

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + I + I ++ +   L  ++TL       L   ALF   F+L A+  +L LIG    + +
Sbjct: 818 VYIVLGILYESYVHPLTILSTLPSAGVGALLALALFDTPFSLIALIGILLLIGIVKKNAI 877

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
           ++ D   +  +     +S RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 878 MMVDFALEAERNGN--LSPRDAIFQACLLRFRPILMTTLAALFGALPLVLTSGDGAELRQ 935

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I +A G++++   +++    + L +   R K  
Sbjct: 936 PLGITIAGGLIMSQLLTLYTTPVVYLMMDKLRRKKR 971


>gi|296132630|ref|YP_003639877.1| acriflavin resistance protein [Thermincola sp. JR]
 gi|296031208|gb|ADG81976.1| acriflavin resistance protein [Thermincola potens JR]
          Length = 1046

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 51/517 (9%), Positives = 143/517 (27%), Gaps = 40/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++  +   +GL         +   + FPS                        
Sbjct: 9   KRPAMMTMVIMVFVVLGLYT-----YHRMGAELFPSVNLPYV---------AVVTNYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + L +         +      L F  S   +  A  V   +  
Sbjct: 55  GAEEIETQITKPLEDELASLSQLKRIRSQASEGFTFTVLEFEMSADADKAAMDVQKKVDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  D    ++      +  +++      + +    + + ++I    D++       
Sbjct: 115 IKGRLPEDASDPVVYKQDINDQPVLIMALQSKRPLYETKKMAEDMI---KDRLQKIAGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    D ++L     +  ++       N ++            +     
Sbjct: 172 DVSVVGGQKREILVSVDKAKLAGYGLSLNQIINRLRAENLNQPSGRLDRPEAEYNVRVLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +I  + +                                   +      V +  
Sbjct: 232 EFKSLDDIRNLDI--------------------PTGNGASVPLSAVATVTDGYQEVREYS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +   ++  S     E        ++         IV          S   
Sbjct: 272 RVNGISAVSLMVFKQSDASIVEVGERVKEEIDKIQRELPEDVKIIVSRDTSQFIRTSLDD 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + +         + L++ +   +  ++   +I  +++  L ++   G T  + S+ G+ 
Sbjct: 332 TRNSIIEGICTTALALYIFLREWRSTVIVALAIPTSLLAALMMMFFAGFTFNMLSLMGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDM---GFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD +I+V E I    +  +    +          A   I  S++        + 
Sbjct: 392 LCIGILVDDSIVVIENIHRHLKMGKDPATAALDGRMEIGMAAVAITLSDVVVFTPIAFMR 451

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
              G   R F +T+  + L S+F + ++   +   + 
Sbjct: 452 GMVGQFFRQFGLTVVFATLFSLFVSFTLTPMLAAKLF 488



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 70/217 (32%), Gaps = 13/217 (5%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           ++    ++          ++   + + +  IV   T Q            +I        
Sbjct: 286 QSDASIVEVGERVKEEIDKIQRELPEDVKIIVSRDTSQFIRTSLDDTRNSIIE------G 339

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I   A+ +YI++R +W   +     +   +   L      G  FN+ ++  +   IG  V
Sbjct: 340 ICTTALALYIFLR-EWRSTVIVALAIPTSLLAALMMMFFAGFTFNMLSLMGLALCIGILV 398

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +    +                 E    +V  +++  +   P+A      G
Sbjct: 399 DDSIVVIENIH---RHLKMGKDPATAALDGRMEIGMAAVAITLSDVVVFTPIAFMRGMVG 455

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                F + + F  + +   S  +   +   ++    
Sbjct: 456 QFFRQFGLTVVFATLFSLFVSFTLTPMLAAKLFKQEK 492


>gi|222086801|ref|YP_002545335.1| acriflavin resistance protein (transporter protein) [Agrobacterium
           radiobacter K84]
 gi|221724249|gb|ACM27405.1| acriflavin resistance protein (transporter protein) [Agrobacterium
           radiobacter K84]
          Length = 1109

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/620 (11%), Positives = 170/620 (27%), Gaps = 45/620 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  +G      +      + RFP+                  +     
Sbjct: 9   RNPVAPLLGFFLLMVVGA-----HAFFNLPITRFPNIDVPVV---------NVTVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++   Q++  + F                +  
Sbjct: 55  SPAELEMQVTKEIEDAVASINGIDEIQSTVTDGQSQTVVVFRLEVPTPQAVQDTKDAIDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L     + ++     +  +I     +   +     E S  +       +       
Sbjct: 115 IRGNLPSTIDEPIVSKVDVEGQAIQSFAVSSPNMTLE--EMSWFVDDVVKRALQGQSGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E DP++L     T   +S      N                 G   
Sbjct: 173 RVDRYGGADREVRIELDPNKLNAYGITALSVSQQLRGTNIDLGSGR----------GQVA 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E  + + G                 + D +      R         I           
Sbjct: 223 GSEQAIRVLGDAREV----------AQLADTTIALTNGRFVKLSDLGVIKDTYQEPKSFS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S     +T G     +RA +  + + +++  +V    G+   
Sbjct: 273 RFNNTPVVTFGVFRAKGASEVTVAKTVGDTLDKVRAENPNVSIELID-DSVYYTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  L++  ++ L+ I T  +++ +G +L L S   + 
Sbjct: 332 AMHTLLEGALLAVIVVFLFLRNWRATLISAVALPLSAIPTFWIMNQIGFSLNLVSFLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    +  ++ + +           +  +  T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIKMGKTPYRAAIDAADEIGLAVIATTFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLSRFFL 533
           G   +    F +T+  S+  S+  A  I   M  +++R          +         +L
Sbjct: 452 GIPGQYFIQFGLTVAFSVFFSLLVARLITPMMAAYLMRPEDAVDDHHDNDGRFMRGYSWL 511

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           +       + R        +   +     ++F  G     +    I L         L  
Sbjct: 512 VRLTTRKWYTRYPTLLAAFAFSIASVFALIMFVPGSFIPPEDASRIVLSAELPPNARLDD 571

Query: 594 VRSNLESLQIGDISFQNFDG 613
                  +            
Sbjct: 572 TERATNEIYSRVKDINGVAS 591



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 52/156 (33%), Gaps = 6/156 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + +A+++       W   L +   L L    T       G   NL +  A+    G 
Sbjct: 337 LEGALLAVIVVFLFLRNWRATLISAVALPLSAIPTFWIMNQIGFSLNLVSFLALTLATGI 396

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V  + +    +      +       + +E     + T+       +P++   G 
Sbjct: 397 LVDDAIVEIENI---ARHIKMGKTPYRAAIDAADEIGLAVIATTFTIIAVFVPVSFMPGI 453

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  F + +AF +  +   +  I   +  ++  
Sbjct: 454 PGQYFIQFGLTVAFSVFFSLLVARLITPMMAAYLMR 489



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 47/121 (38%), Gaps = 6/121 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + +L L I        + G   ++  +  +L L+G    + +++ D   + M
Sbjct: 898  DVIQPFTILLSLPLAIGGVALALIMTGNALSMPVMIGILMLMGIVTKNAILLVDFAIEMM 957

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +   + + ++  +     + TS+A    +LP A+    GGS     AI +  GI
Sbjct: 958  H---HGMPRLEAVVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGI 1014

Query: 806  V 806
            +
Sbjct: 1015 I 1015


>gi|217423711|ref|ZP_03455212.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 576]
 gi|217393569|gb|EEC33590.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 576]
          Length = 1036

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|333030265|ref|ZP_08458326.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides coprosuis DSM 18011]
 gi|332740862|gb|EGJ71344.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides coprosuis DSM 18011]
          Length = 1048

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/679 (10%), Positives = 169/679 (24%), Gaps = 39/679 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  +G++  +        ++++P   P                      
Sbjct: 8   RPVLSTVISIFIVVLGVIGIV-----TLPVEQYPDIAPPTV---------NISTQYPGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            D +   + +  +E  + ++       S        I + FA     +  A  V   +  
Sbjct: 54  ADVIMKSVVIPIEEAVNGVEGMTYMSSSASNSGMASIEVYFAKGVDPDIAAVNVQNLVAT 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +  K  +    +    I+    + +                 I QI       
Sbjct: 114 VTPILPAEVNKIGVTVKKQLSSYILGISLSSENPDYDGQFIQNYADINLIPQIKRVYGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P  +        ++       N        G          QY
Sbjct: 174 DASVMGAKTYSMRVWLKPDVMASYKMNPTEVIAALADQNIEAAPGELG---QNSDQTYQY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +               + +   +I      +         N+           
Sbjct: 231 TLRYTGRLE--------------SPEEFENIIIRSSDSHILKLKDVANVDLGSLSYNIIS 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S  A  +    I     +         P                S S 
Sbjct: 277 KTNGNESVFISISQTAGSNAQEVINNIKNVLDEAAPSFPPGLKMSYLMDANNFLDASISK 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   K  L+   ++ + +I T   L ++G ++ + ++  +V
Sbjct: 337 VLQTLFEALILVFLVVFLFLQDWKSTLIPGIAVPVAIIGTFFFLQVMGFSVNILTLFALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +             +           I    +      + + F 
Sbjct: 397 LAIGIVVDDAIIVVEAVHAHMEAGETDPRQAAIAAMKEISPAIVSITLVMSSVFIPVSFI 456

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG +    R F +T+ ++I +S   A+++  A+    ++            ++ F +   
Sbjct: 457 GGTSGVFFRQFGLTLAIAIALSAVNALTLSPALCALFLKPDLKSGEKKKNFAQRFFVFFN 516

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                   +      S+ F         T  +           +       V      + 
Sbjct: 517 ANFDAATQK---YKSSLHFLGKKGHRWITVAIIITFSGLLYFMMQTTPTGFVPQEDGGTM 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +  + +   S           +    +  + +     +  V          S+     + 
Sbjct: 574 VGLVSLPPGSSLERTDSVVNELIQITKEVEEINFATEITGVNFLGGMGGIASSYSTIFMN 633

Query: 658 GPKISRELIRKGIVGVIIS 676
               +    +   +   +S
Sbjct: 634 LKHWNERDKKPDDIAAYLS 652



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 80/220 (36%), Gaps = 9/220 (4%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKG 669
              N  V +            V+  +K  + E  P              +  L   I K 
Sbjct: 278 TNGNESVFISISQTAGSNAQEVINNIKNVLDEAAPSFPPGLKMSYLMDANNFLDASISKV 337

Query: 670 IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +  +  + I + + +++    W   L     + + I  T  F  + G   N+  + A++ 
Sbjct: 338 LQTLFEALILVFLVVFLFLQDWKSTLIPGIAVPVAIIGTFFFLQVMGFSVNILTLFALVL 397

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG  V+D ++V + +  +M+   T    R     ++ E     V  ++      +P++ 
Sbjct: 398 AIGIVVDDAIIVVEAVHAHMEAGET--DPRQAAIAAMKEISPAIVSITLVMSSVFIPVSF 455

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            GG+       F + +A  I ++A +++ ++  +      
Sbjct: 456 IGGTSGVFFRQFGLTLAIAIALSAVNALTLSPALCALFLK 495



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/335 (10%), Positives = 93/335 (27%), Gaps = 30/335 (8%)

Query: 514  IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
              + +    I     +   L     A+Q      +    ++      + L         +
Sbjct: 723  FPQREISADIAKIKEAGLTLQDVMTAMQAYIGSMYVSDFNLYGKQYRVMLQAPPEYRKQL 782

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            +   GIQ+         L+   S    +    ++  N     +  +      G S     
Sbjct: 783  EDLEGIQIRTAYGEMAPLTEFISTKPVMGPQALTRFNMFQSMDVTIMPNSIDGYSSGDVI 842

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKW 690
                     T         +                 VG+I     + +Y+    +   +
Sbjct: 843  NAVKEVAANTLPTGYGYEFSGMTREETSQG-----SQVGIIFFICIVFVYLLLAALYESY 897

Query: 691  YFALGAITTLILDITKTLGFFALFG----------IEFNLTAVAAVLTLIGYSVNDKVVV 740
               L  + +L + +     F  +FG          ++ ++  +  +L        + +++
Sbjct: 898  IIPLAVLLSLPIGLAGVFIFIKIFGSHIGIVNNIYVQISMIMLIGLLA------KNAILI 951

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             +     ++      +  +         L   + TS A  I +LP+      G +   S 
Sbjct: 952  VE---YALQRRQQGQTVVEAAVNGAVARLRPILMTSFALIIGLLPLMFASGAGATGNRSI 1008

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             I    G+ V     + +   + +     + + ++
Sbjct: 1009 GISAVGGMFVGTMIGVLVIPTLYIVFQTIQDRFSK 1043


>gi|318606700|emb|CBY28198.1| multidrug transporter MdtB [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 1047

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 146/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPNDLPYPPIYSKVNPADPPILT-LAVTSSAIPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEDYRDLIVAYQNGAPVRLQDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           V          S +  
Sbjct: 284 ANNQQAIVLNIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTTTIRASVNDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIVLVVMVIYLFLRNAAATIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPQDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAMVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 89/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  + ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSAEDYRDLIVAYQNGAPVRLQDVATIEQGAENNKLAAWANNQQAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   V              +  EL+    
Sbjct: 293 NIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTTTIRASVNDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I  + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 349 --LAIVLVVMVIYLFLR-NAAATIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +        +D   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPQDAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAMVSLTLTP 492



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 6/200 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +E V +    I   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 830  EAVEAVTQAEQAIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPVTILSTLPTAGVGALLALMLTGHELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGAGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRA 828
               ++F    I L       
Sbjct: 1008 QVLTLFTTPVIYLLFDKLAR 1027


>gi|317492805|ref|ZP_07951229.1| AcrB/AcrD/AcrF family protein [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918927|gb|EFV40262.1| AcrB/AcrD/AcrF family protein [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 1049

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/610 (11%), Positives = 161/610 (26%), Gaps = 45/610 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 28  RPVATTLLMVAILLAGIV-----GYRSLSVSALPEVDYPTIQ---------VVTLYPGAS 73

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D     +    +     +              + ITL F  S   +    +V   +   
Sbjct: 74  PDVTTSAITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLSLSLDVAEQEVQAAINAS 133

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++       +    +    +  +   +I        
Sbjct: 134 TNLLPNDLPYPPIYSKVNPADPPIMTIAVTSDAV-AMTQVEDMVETRISQKISQVSGVGL 192

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +   +      +  +       N +     F              
Sbjct: 193 VTLSGGQRPAVRVRLNAPAVAAYGLDSETIRTAIANANVNSAKGSFDGPTRS-------- 244

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 245 ------------VTLSANDQMKSAEDYRDLIVAYSNGAPVRLSDVATIEQAAENTKLAAW 292

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   L   L           V          S S  
Sbjct: 293 ADKKPAIILNVQRQPGANVITTADSIQALLPQLTESLPKSVKLTVLTDRTETIRASVSDV 352

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 353 QTELLLAIALVVMVIYLFLRNVPATIIPSVAVPLSLVGTFAVMYFLNFSINNLTLMALTI 412

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 413 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 472

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD--- 536
             G   R FA+T+ ++ILIS   ++++   M   ++ ++ ++  +    +          
Sbjct: 473 IIGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERFFERVIA 532

Query: 537 ----CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                + +                 +  +  +F     + I   G IQ  V A + V  S
Sbjct: 533 KYGEWLKVVLNHPMLTLGVALSTLVLTVLLYIFIPKGFFPIQDNGLIQGTVQAPQSVSFS 592

Query: 593 VVRSNLESLQ 602
            +    + L 
Sbjct: 593 EMAQRQQKLA 602



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  + +  G  + +     ++ +   + L +      +   
Sbjct: 242 TRSVTLSANDQMKSAEDYRDLIVAYSNGAPVRLSDVATIEQAAENTKLAAWADKKPAIIL 301

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +     +           ++ E + K +   V     +        +  EL+    
Sbjct: 302 NVQRQPGANVITTADSIQALLPQLTESLPKSVKLTVLTDRTETIRASVSDVQTELL---- 357

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 358 --LAIALVVMVIYLFLR-NVPATIIPSVAVPLSLVGTFAVMYFLNFSINNLTLMALTIAT 414

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 415 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 471

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 472 DIIGRLFREFAVTLAVAILISAVVSLTLTP 501


>gi|302037486|ref|YP_003797808.1| putative multidrug efflux transporter [Candidatus Nitrospira
           defluvii]
 gi|300605550|emb|CBK41883.1| putative Multidrug efflux transporter [Candidatus Nitrospira
           defluvii]
          Length = 1038

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 76/630 (12%), Positives = 167/630 (26%), Gaps = 48/630 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +     L++       +  +  +P                    V    +
Sbjct: 10  RPVLAAVATLL-----LMLFGLLSYSRLPVREYPDTTFPIV---------SVMTVYPSAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  S ++       + R+  + I L F+ +R  +  A+ V   +  V
Sbjct: 56  AQLVETDITSVLEDALSGVEGLRTLRSTSREGLSTIGLEFSLTRNLDAAANDVRDRVTRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    +  L++        I+      D+     +E +    RQ  D++        
Sbjct: 116 QHLLPQGIESPLVMKEDSDADGIMWLALISDRHTE--LEMTDFAERQLKDRLAPLPGVSS 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            +        +    DP RL   L T   +       N S             S      
Sbjct: 174 VMLDGGRRYAMRIWLDPDRLASRLLTVQDVEDALRTQNVSMPTGRIESTQREFSVRMGGG 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E                           +                              
Sbjct: 234 LEKP--------------------PQFNQLILAYRDGYPVRLQDVGAAEIGPEDDRKLVR 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +++ +              + A        +    +      S    
Sbjct: 274 VNGKPAIGLGIMKQSKANTLEAARGVKRTLPAMEALLPEGMQLVTAFDSSIYIERSLHEV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +  +   LV++V+F+ +   +  L+   +I  +++ T  ++ + G+++   ++ G VL
Sbjct: 334 YTSVGLSLILVVLVVFLFLRSARATLIPAVAIPGSILGTFVIMQMTGSSINTITLLGFVL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E +     +  S   +   G       +  + +T       + F  G
Sbjct: 394 AIGLVVDDAIVVVENVYRRIEQGLSPTQAAVEGSREIGFAVVSTTLTLAAVFFPIIFLPG 453

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLSR 530
              R      I +  S+L+S F A+++  AM   +                         
Sbjct: 454 IVGRLFAELGIAVAGSVLLSGFIALTLTPAMCARLLGKTVGTASPPRGSALDASAWLRWM 513

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  + I   R      G ++   + ++ +L        ++  G   + V A     
Sbjct: 514 THRYRLALEIALKRPSTILSGAALSLIVSAVLMLGLPSELAPLEDTGWFAVHVSAPEGST 573

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
           L          +         D     + R
Sbjct: 574 LDYTDRYARDTEETTARIPEMDSYYTVVAR 603



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 4/129 (3%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     +   I  T     + G   N   +   +  IG  V+D +VV + +    + 
Sbjct: 356 RATLIPAVAIPGSILGTFVIMQMTGSSINTITLLGFVLAIGLVVDDAIVVVENV---YRR 412

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
               +S      +   E     V T++       P+    G V   FA  +   +  +  
Sbjct: 413 IEQGLSPTQAAVEGSREIGFAVVSTTLTLAAVFFPIIFLPGIVGRLFA-ELGIAVAGSVL 471

Query: 811 SSIFIAAPI 819
            S FIA  +
Sbjct: 472 LSGFIALTL 480



 Score = 42.4 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 66/156 (42%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +F+ +   +  + ++   +   L    LF    N+ +   ++ LIG 
Sbjct: 860  LLALLVVYLILAAQFESFRHPITVLLSVPPALAGALLALLLFRGTLNIYSEIGLMILIGL 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
               + +++ +      +L       R  I ++    L   V T+++  ++ LP+A+  G+
Sbjct: 920  VTKNAILIVEFAN---QLCQGGTPPRAAIVEASVLRLRPIVMTTLSTILAALPLALATGA 976

Query: 793  VIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                     + +  G+V++   ++F+   + L    
Sbjct: 977  GAAGRWHIGLVVICGLVLSTLLTLFLVPVVYLLFAG 1012


>gi|160897700|ref|YP_001563282.1| acriflavin resistance protein [Delftia acidovorans SPH-1]
 gi|160363284|gb|ABX34897.1| acriflavin resistance protein [Delftia acidovorans SPH-1]
          Length = 1043

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/615 (12%), Positives = 170/615 (27%), Gaps = 44/615 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GLL           +   P                    +     
Sbjct: 10  RPVATSLLMVAVLIAGLLA-----YRLLPISALPEVDYPTIQ---------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL FA     +    +V   +   
Sbjct: 56  PDVMTSNVTAPLERQLGQMPGLSQMSSTSSGGASVITLRFALDMAMDVAEQQVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     L +      + +L+   I       I  +  +  +   ++        
Sbjct: 116 SNLLPSDLPMPPLYSKVNPADAPILT-LAITSPSLPVIRVNDLVENRLAPKLSQVNGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P+ L  L  T   +       N  +                   
Sbjct: 175 VAIAGGRRPAVRIQANPTALAGLGMTLDDVRTAIAAANVKQAKG---------------G 219

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +     S I  N    +     +  +   +   +      +   D     LA       
Sbjct: 220 FDGPARASTIDANDQLQSAAEYRNLIIAFKNGLPVRLSDIAQTVDDAENTRLAAWAGTPE 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +          +   +   T++    L   L+          V          S +  
Sbjct: 280 GGSRAGVILNIRRQPGANVIETVDRIKALLPQLKETLPASLDVQVLTDRTVTIRASVNDM 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV+ V+F+ +      L+  F++ L++I T  ++ L G ++   ++  + +
Sbjct: 340 QLELMLAIALVVAVIFVFLRSASATLIPSFAVPLSLIGTFGVMYLAGFSINNLTLMALTI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     K +    +   G  +   TI    I+ +   + L F G 
Sbjct: 400 STGFVVDDAIVMIENIARFVEKGEPPMQAALKGAKQIGFTIISLTISLIAVLIPLLFMGD 459

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMKSIDINPL 528
             G     FAITM ++ILIS   ++++   +   +              +   +      
Sbjct: 460 VVGRLFHEFAITMAVAILISAVVSLTLTPMLCARLLRHQPEGAEEEKHGRLYHATGRFFD 519

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +     R     +      ++  +         +     G IQ    A++ 
Sbjct: 520 RTIAGYGRILTWVLDRRGLTWIVFLATLAVTVLLYFAVPKGFFPDQDTGTIQATTEADQS 579

Query: 589 VDLSVVRSNLESLQI 603
           +  + +    ++L  
Sbjct: 580 ISFAAMAERQQALAE 594



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 78/239 (32%), Gaps = 9/239 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + VD +            +   +                        +L  +K+ + 
Sbjct: 258 DIAQTVDDAENTRLAAWAGTPEGGSRAGVILNIRRQPGANVIETVDRIKALLPQLKETLP 317

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
             + +  + +  +       ++  + ++ + +    + +++         L     + L 
Sbjct: 318 ASLDVQVLTDRTVTIRASVNDMQLELMLAIALVVAVIFVFL---RSASATLIPSFAVPLS 374

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T G   L G   N   + A+    G+ V+D +V+ + +    +             K
Sbjct: 375 LIGTFGVMYLAGFSINNLTLMALTISTGFVVDDAIVMIENI---ARFVEKGEPPMQAALK 431

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              +     +  +++    ++P+   G   G +   FAI MA  I+++A  S+ +   +
Sbjct: 432 GAKQIGFTIISLTISLIAVLIPLLFMGDVVGRLFHEFAITMAVAILISAVVSLTLTPML 490


>gi|115524748|ref|YP_781659.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
 gi|115518695|gb|ABJ06679.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
          Length = 1034

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/562 (12%), Positives = 157/562 (27%), Gaps = 40/562 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +C +GL+           +   P+      I L     G         
Sbjct: 10  RRPVGTTLLSIGLCLLGLVA-----YRFLPVAALPNVDFPM-IFLSASRPG--------A 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +    Q +I L FA  R  +  A  V   +  
Sbjct: 56  APSVMAATVAAPLERRLGEIAGLDQITSTSSLGQTRIQLQFAIGRDIDRAARDVQAAINA 115

Query: 122 VNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + L  D              + + +       + + AI            +I      
Sbjct: 116 AMADLPSDLPTMPKFRKANSAAMPVYILALTSKTIPTSAI--YDTADTVLAQRISQVPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S      +    +P  L     +T  +    V  N      +F      ++    
Sbjct: 174 GEVTVSGADQPAVRIALNPVALSNAKISTDDVRSAVVNANPLGPAGIFDGARQSETLSLN 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    E                      DI                 +          
Sbjct: 234 RQMRTAAEF--------------------RDIIVKSANGNSLRLSDIATVEDATRSSRSL 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        + ++  +   T++    L   L+                G+   S  
Sbjct: 274 AWYNKQPAVLIQITKQSDANVIETVDRVKALLPELKQWIPAGVEISTLTDRTGSIRASVE 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T    A LV++V+FM +      + A  S+ L +  T A + L G ++ + S+  +
Sbjct: 334 DMEWTLLATACLVMLVVFMFLRRITPTIAAGVSVPLALAGTCAAMWLAGFSINILSLMAL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G  VD  I++ E +            +   G  +   T+   +++ + A   L F 
Sbjct: 394 AIAVGFVVDDAIVMIENMYRNLEAGMEPLQAALEGAKQIGFTVLSISLSLVAAFAPLIFM 453

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G  +R F++T+  +I++S   ++++   +    IR + ++       +    +   
Sbjct: 454 DGVVGRLLREFSLTLTFAIVVSTIVSLTVTPMICAHYIRTESVRRESWFDRAVEGSVSGM 513

Query: 538 IAIQFMRARFWGVGISILFSIC 559
           +       R      ++   + 
Sbjct: 514 VRFYAWTLRAVLRLPALTMLVF 535



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 76/213 (35%), Gaps = 10/213 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---- 669
            K   V +Q            ++ VK  + E+                +  +        
Sbjct: 277 NKQPAVLIQITKQSDANVIETVDRVKALLPELKQWIPAGVEISTLTDRTGSIRASVEDME 336

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              +  + + ML+      +    + A  ++ L +  T     L G   N+ ++ A+   
Sbjct: 337 WTLLATACLVMLVVFMFLRRITPTIAAGVSVPLALAGTCAAMWLAGFSINILSLMALAIA 396

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G+ V+D +V+ + M +N++     +       +   +     +  S++   +  P+   
Sbjct: 397 VGFVVDDAIVMIENMYRNLEA---GMEPLQAALEGAKQIGFTVLSISLSLVAAFAPLIFM 453

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            G V   +  F++ + F IVV+   S+ +   I
Sbjct: 454 DGVVGRLLREFSLTLTFAIVVSTIVSLTVTPMI 486



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 98/291 (33%), Gaps = 11/291 (3%)

Query: 546  RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
            R      +       +  +     N   D       G    +    ++VR+  +   +  
Sbjct: 743  RQISTIYTQRNQYQVVLEIDPKFQNDPTDLDRIYVAGKDGAQIPLSALVRTKRDLAALAV 802

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
               Q+F         +   P           + +  + E +  S   N    G   S   
Sbjct: 803  YHSQSFPSTTVSFNLMPDVPLQVATANIQQAVDELHMPEGIRGSFDGNAGDFGKASS--- 859

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              K  + ++ + +AM I + + ++     L  I+TL       L    +      + A  
Sbjct: 860  --KQPLLILAAFVAMYIVLGVLYESLAHPLTIISTLPSAGLGALLALQITNTPLTVIAFV 917

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ LIG    + +++ D   +        +S  D I ++        + T++AA  + +
Sbjct: 918  GIILLIGIVKKNGIMMVDFALE--AERQRGMSSADAIFEACVVRFRPILMTTLAALFAAI 975

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+ V    G  +     I +  G++V+   +++    I L I   R + +R
Sbjct: 976  PLVVAVGPGTEMRRPLGITIIGGLIVSQILTLYTTPVIYLLIDRLRQRWSR 1026


>gi|15616378|ref|NP_244683.1| cation efflux system [Bacillus halodurans C-125]
 gi|10176441|dbj|BAB07535.1| cation efflux system [Bacillus halodurans C-125]
          Length = 1093

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 96/604 (15%), Positives = 190/604 (31%), Gaps = 40/604 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + ++   +   +G +           L   P   P           G         
Sbjct: 7   RRPVFTIVGMIIFLLVGGIS-----YVNLPLQLTPDLNPPI---------GAVTASYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    ++  S             +    I L F  +   +++ + +   +  
Sbjct: 53  SAEEVSENVTRILEDELSTTSGLNKITSQSMEGSAIIILEFGWTTNIDDVENDIISTINR 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L         +        I+      D     AI    E + +   +IG  E   
Sbjct: 113 A--DLPDGASNPSFLKFDPSAFPIMELVVTSDT---EAISDISEALDELEREIGRVEGVA 167

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 R++ ++    D   L +   T   +       + S  G          +     
Sbjct: 168 SVSSHGRLMERVEVTIDDEALEEANLTQQDVVDVIEANDISLPGGTISDGDRSLTTRTIR 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++    I                 + +V     + G         D         +  R
Sbjct: 228 TLDAVETI-----------------EDLVLTIDTQTGDDVLLSDVADVSISLEDETVITR 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P +  +I    A  S + ++     L  +L           V        L + + 
Sbjct: 271 ANNDPAVQFSIMKEDAANSVDVSVAITERLDELLEQDRFDDVSAFVLYDEGDFILEAINN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A + ++VLF+ +   K  L+   +I  +VI+T A L     +L + S+ G+ 
Sbjct: 331 VLVALIAGATMAMVVLFLFLRNFKTPLIIGIAIPFSVIVTFAFLYFTNVSLNILSLGGLA 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIG+ VD++I+V E I       +    +   G       I  S +T +   V + F  
Sbjct: 391 LGIGMLVDNSIVVIENIYRHLSMGKEPKQAALEGTREVRGAITASTLTTISVFVPILFLT 450

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+T+ LS+  S+  AI++V  M   ++R  +         SRF L  +  
Sbjct: 451 GLVGELFIQFALTVSLSLFASLLVAITLVPLMASRLLRKFQQNEEAKRQQSRFILTIERS 510

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSN 597
               +R R   +  ++L  +  +  L T G+++     +G + + +       L   R  
Sbjct: 511 IKWALRHRAMVLIATLLLFVGGLYGLSTVGVDFLEDMDEGLMVVEIEHEPGTSLERTRET 570

Query: 598 LESL 601
           +E++
Sbjct: 571 VEAI 574



 Score = 89.0 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 91/249 (36%), Gaps = 11/249 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V L  V +  E      I+         F V            + VL++V ++  E   
Sbjct: 773  YVPLGDVVTIEEGEGPATINRIEQRDAVEFTVTYDSSLSLGDISSIVLDIVDEQNFEDTT 832

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                   +        +L        +++ + + + +  +F+ + F    + +L L +  
Sbjct: 833  EFAFTGDQEALETAMADLTG----AFMLAVVFVFLVMAAQFESFRFPFVVMFSLPLVMIG 888

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                  + G  F++ A   ++ L G  VN+ +V+ D M    +L  +  +  + I +++ 
Sbjct: 889  VSLALLVTGTSFSVMAGIGMIILAGIVVNNAIVIVDYMN---QLKASGATSYEAIVEAVK 945

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            +     + T++   + VLP+A+    G  +     + +  G++     ++F+   I    
Sbjct: 946  QRTRPVLMTALTTILGVLPLALALGEGTEMQRPIGLTVIGGLISGTFLTLFVIPVIYSLF 1005

Query: 824  YDWRAKNAR 832
                 +  +
Sbjct: 1006 DKDTRRLNK 1014



 Score = 81.7 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 84/253 (33%), Gaps = 15/253 (5%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +  D  ++    +     +          +  V+      D+     V   + +++ E+
Sbjct: 244 TQTGDDVLLSDVADVSISLEDETVITRANNDPAVQFSIMKEDAANSVDVSVAITERLDEL 303

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA-----MLIYIWIRFKWYFALGAITTL 700
           +      +          + I + I  V+++ IA     M++       +   L     +
Sbjct: 304 LEQDRFDDVSAFVLYDEGDFILEAINNVLVALIAGATMAMVVLFLFLRNFKTPLIIGIAI 363

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
              +  T  F     +  N+ ++  +   IG  V++ +VV + +    +  +     +  
Sbjct: 364 PFSVIVTFAFLYFTNVSLNILSLGGLALGIGMLVDNSIVVIENI---YRHLSMGKEPKQA 420

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             +   E  G    +++      +P+       G +   FA+     + ++  +S+ +A 
Sbjct: 421 ALEGTREVRGAITASTLTTISVFVPILFLTGLVGELFIQFALT----VSLSLFASLLVAI 476

Query: 818 PILLFIYDWRAKN 830
            ++  +     + 
Sbjct: 477 TLVPLMASRLLRK 489


>gi|126439107|ref|YP_001058406.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 668]
 gi|126218600|gb|ABN82106.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 668]
          Length = 1036

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|134283879|ref|ZP_01770576.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 305]
 gi|134244867|gb|EBA44964.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 305]
          Length = 1036

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|86740079|ref|YP_480479.1| preprotein translocase subunit SecD [Frankia sp. CcI3]
 gi|86566941|gb|ABD10750.1| protein-export membrane protein SecD [Frankia sp. CcI3]
          Length = 607

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 128/572 (22%), Positives = 225/572 (39%), Gaps = 75/572 (13%)

Query: 4   NPWLVILYS---MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + W  +      ++   GL+ A  N+ P+                LGLDL+GG+ ++L  
Sbjct: 13  SVWTRLGILGGLIVVLYGLMAATGNWKPR----------------LGLDLQGGTSVILTP 56

Query: 61  ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                ++  +G +    D +R  +   G+    + +  N+I +S    R + ++ D V  
Sbjct: 57  RATQGNNVDSGAVNQAVDIIRQRVDGLGVAESEVHRTGNQIEISVP-GRGRNDVVDLVGQ 115

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +    ++    +   + T T    +   +     Q    A + +  I          +
Sbjct: 116 TAELRFREVATSGQATPVPTPTGAASAP--TPGATGQPAPTAGQSTPSIAPSSPAPAASN 173

Query: 178 ESTIQRLGSHRILIQLPGE--------------------------------------QDP 199
           +      G+ R LI  P                                          P
Sbjct: 174 KPAALGDGTGRGLIAQPVSLTAAGTPAVGAASASPVASASPAPAPAPAATGSTGSTGDSP 233

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG--- 256
                    +   +   V   +             D  G    +     + G  +     
Sbjct: 234 PADVFARYESLTCAAADVRKASVSTDRPQDWTAACDRTGTTKYLLKPATVVGTDVKTASA 293

Query: 257 ----ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                       T + VV++ F   G  +F ++T   IGK +A+VLDG V +AP  N   
Sbjct: 294 GLQGGGGTTGITTGQWVVNVEFTGPGQNKFTKLTESTIGKQVAIVLDGVVQSAPQTN-ER 352

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
             G AQISG F+   A  LA +LR G+LP+     +  ++   LG DS++ G  A   GL
Sbjct: 353 IPGSAQISGGFSQSDAEDLANVLRYGALPLAFERSQAESISPTLGRDSLHGGLLAGAIGL 412

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAV 428
           VL++ +  + Y   G+V   S+ ++ +L  A + LL    G TLTL  IAG+++ IG+  
Sbjct: 413 VLVIAYSFLYYRALGMVVIISLAVSGLLIYASVVLLGVAIGFTLTLAGIAGLIVSIGVTA 472

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           DS ++  ERI++E R  ++V  + D  +  A  T+  ++  + +A  VL+    G+VRGF
Sbjct: 473 DSFVVYFERIKDEVRAGRTVRAATDRAWPAARRTMLSADTVSFLAAAVLYILSIGSVRGF 532

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           A T+GLS L  +       R ++  ++R +  
Sbjct: 533 AFTLGLSTLSDVVIMFIFTRPLVTLLVRRRLF 564



 Score = 99.0 bits (244), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 82/247 (33%), Gaps = 10/247 (4%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           N+   L+      +   + D   Q+       +       G              +   +
Sbjct: 321 NKFTKLTESTIGKQVAIVLDGVVQSAPQTNERIPGSAQISGGFSQSDAEDLANVLRYGAL 380

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                    E + P + R+ +  G++   I  + ++ Y ++ ++    +  I +L +   
Sbjct: 381 PLAFERSQAESISPTLGRDSLHGGLLAGAIGLVLVIAYSFLYYR-ALGMVVIISLAVSGL 439

Query: 706 KTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L G        L  +A ++  IG + +  VV ++R++  ++      + R   
Sbjct: 440 LIYASVVLLGVAIGFTLTLAGIAGLIVSIGVTADSFVVYFERIKDEVRA---GRTVRAAT 496

Query: 762 DKSINETLGRSVYTSMAA-FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           D++      R++ ++    F++   + +     +  FA  +    +           P++
Sbjct: 497 DRAWPAA-RRTMLSADTVSFLAAAVLYILSIGSVRGFAFTLGLSTLSDVVIMFIFTRPLV 555

Query: 821 LFIYDWR 827
             +   R
Sbjct: 556 TLLVRRR 562


>gi|33519697|ref|NP_878529.1| preprotein translocase subunit SecD [Candidatus Blochmannia
           floridanus]
 gi|33517360|emb|CAD83745.1| protein-export membrane protein SecD [Candidatus Blochmannia
           floridanus]
          Length = 624

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 135/533 (25%), Positives = 256/533 (48%), Gaps = 38/533 (7%)

Query: 20  LIALPNFLPQSMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE 76
           + +    +  + +   P  +       + LGLDL+GG +L++ VD    +N     Y D 
Sbjct: 103 IYSERYLVSCTKIPDMPLWLFYIRAKPLKLGLDLKGGLYLLVRVDIQSMLNKIQIQYMDI 162

Query: 77  LRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL 135
           ++  L ++ I    +     + I + F +S  +      ++                 + 
Sbjct: 163 VQDNLNEKNIVYLKICAINCSDIEIIFKNSDDRNQAISCLSNCHN-----------HLIF 211

Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195
            T  + ++ I  S++ I+ +  +A++Q+  IIR RI+Q+ IS+  I R G   ++I++PG
Sbjct: 212 NTINDCKLRISFSESYINTMYEYAMQQNSNIIRYRINQLQISDPVIYRYGKDCVIIEIPG 271

Query: 196 EQDPSRLRQLLGTTAKMSFHKVLP-----NNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            QD S ++ +L  TA + F  V         +            D +GN   +  KV ++
Sbjct: 272 IQDISVIKTVLNNTASLEFRLVNTELNQFKINNNYIPEDSEIKLDDNGNIVPIYKKVILT 331

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARR-----------------FFEVTRDNIGKP 293
           G H+  A  +FD      V                              ++ T     + 
Sbjct: 332 GDHVINANMSFDEYHRPQVNISLDSFGNTIISKFTKDNIGKIMATLFIEYKDTGKKDAQG 391

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            +++     +      Q+  +    I+G   +     L+++LR GSL   + + EE+ +G
Sbjct: 392 HSIIYRRDKVINVATIQSQLNHNFCITGMNNLNEVRRLSSLLRMGSLVTPIYVDEEKIIG 451

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATL 412
             LG  +I +G  A + G+++ + FMIV Y  +GL+A  ++  N +L ++LLS++   TL
Sbjct: 452 PTLGKKNIAQGIIACIVGMLISICFMIVWYRYFGLIAGIALVTNFVLIVSLLSVIPGITL 511

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           T+ SI G+VL + +A+D+N+L+NER++EE ++ + V  S+ +G+ +A ++I D+NIT +I
Sbjct: 512 TMSSIVGVVLTLSVAIDANVLINERVKEELKQGKPVQYSIYIGYRKACTSIIDANITTII 571

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             ++L+ F  G ++GFAIT  + +  SMFT+I   RA++  +   K+ K + I
Sbjct: 572 TAIILYIFNTGPIQGFAITTIIGVGTSMFTSIIGTRALVNLVYGKKRTKYLSI 624



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 78/174 (44%), Gaps = 5/174 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-GI 716
           GP + ++ I +GI+  I+  +  + ++ + +++ F L A   L+ +    +   ++  GI
Sbjct: 451 GPTLGKKNIAQGIIACIVGMLISICFMIVWYRY-FGLIAGIALVTNFVLIVSLLSVIPGI 509

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              ++++  V+  +  +++  V++ +R+++ +K        +  I     +     +  +
Sbjct: 510 TLTMSSIVGVVLTLSVAIDANVLINERVKEELKQ---GKPVQYSIYIGYRKACTSIIDAN 566

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +   I+ + + ++    I  FAI    G+  +  +SI     ++  +Y  +   
Sbjct: 567 ITTIITAIILYIFNTGPIQGFAITTIIGVGTSMFTSIIGTRALVNLVYGKKRTK 620


>gi|313146360|ref|ZP_07808553.1| multidrug resistance protein [Bacteroides fragilis 3_1_12]
 gi|313135127|gb|EFR52487.1| multidrug resistance protein [Bacteroides fragilis 3_1_12]
          Length = 1015

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 93/669 (13%), Positives = 209/669 (31%), Gaps = 43/669 (6%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87
               ++++P   P   I+                  + V   + +  +E  + ++     
Sbjct: 7   QALPVEQYPDIAPPT-IN--------VWATYPGANAETVQKAMIVPLEEAINGVEDMTYM 57

Query: 88  VFS-MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
             +        I + F      +  A  V   + GV S+L  +  K  + T  ++   ++
Sbjct: 58  TSTASNAGDASINIYFKQGANADMAAVNVQNRVNGVLSQLPAEATKTGVTTEKQQNAELL 117

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                           +  +      ++       +          +     P ++ Q  
Sbjct: 118 TFALYSPDNRFDQTFLNNYVKINVEPRLKRIGGVGKAQLFGS-NYSMRLWLRPDKMAQYG 176

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
                +S      N       FG         N+Y ++ +  +S                
Sbjct: 177 LIPDDISSVLAKQNIEAATGSFGANHPT---ANEYTMKYRGRLS-------------TAE 220

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           +    +     G          ++            ++       + + KA  + + TI 
Sbjct: 221 EFGELVIKSLPGGDVLRLKDVADVELGDEYYNYSTEVSGHPAAIMLINQKAGSNASSTIN 280

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
               +   +          +V          S +    T      LV++V+++ +   K 
Sbjct: 281 EIHEVLDEIERDLPEGAEFVVLTDTNKFLYASINSVIRTLIEAILLVIVVVYVFLQDIKS 340

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   SIF+++I T A++SL+G ++ L ++  +VL IG  VD  I+V E ++ +  +  
Sbjct: 341 TLIPTVSIFVSIIGTFAVMSLIGFSINLLTLFALVLAIGTVVDDAIVVVEAVQAKFDEGY 400

Query: 447 -SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFT 502
            S   + D       S I  S I  +   + +   GG +      F ITM +++ IS   
Sbjct: 401 RSPVLAADDAMKGVSSAILTSTIIFMAVFIPVAMMGGTSGAFYAQFGITMAVAVGISAIN 460

Query: 503 AISIVRAMMIFI------IRYKKMKSIDINPLSRFFLIPDCIAIQFMR------ARFWGV 550
           A ++  A+                 +        F ++ + ++ +++R       R W +
Sbjct: 461 AFTLSPALCALFLKPYIDEHGNTKNNFAARFRKAFNVVFERLSRRYVRGVLYIIHRRWLL 520

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             +I  S   + LL        I  +    + V  N     S+ ++N    +I +     
Sbjct: 521 WGTIAASFGLLVLLVNITKTGLIPQEDTGTVMVSMNTKPGSSMAQTNKVMARINNRLDSI 580

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
            + E +  V      G   +Q      +K          ++ +        + ++    +
Sbjct: 581 PEIEYSGAVGGFSFSGSGPSQAMYFMTLKDWDQRKGEGQSVDDVIGKIYAATADVPDATV 640

Query: 671 VGVIISAIA 679
             +    IA
Sbjct: 641 FAMSPPMIA 649



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ + I  T    +L G   NL  + A++  IG  V+D +VV + ++   
Sbjct: 337 DIKSTLIPTVSIFVSIIGTFAVMSLIGFSINLLTLFALVLAIGTVVDDAIVVVEAVQAKF 396

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S     D ++       + +++      +P+A+ GG+       F I MA  +
Sbjct: 397 DEGYR--SPVLAADDAMKGVSSAILTSTIIFMAVFIPVAMMGGTSGAFYAQFGITMAVAV 454

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A ++  ++  +      
Sbjct: 455 GISAINAFTLSPALCALFLK 474



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/167 (13%), Positives = 62/167 (37%), Gaps = 9/167 (5%)

Query: 672  GVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             +I     +LIY+    +    +     + ++   +  +  F  L G+E N+     ++ 
Sbjct: 851  ALIFVFCMVLIYLILCALYESVFIPFAVLLSVPCGLMGSFLFAWLLGLENNIYMQTGLIM 910

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +IG      +++ +      K  +  ++       +    L   + T ++    ++P+ +
Sbjct: 911  IIGLLAKTAILLTE---YAGKRRSEGMTLAQAAYSAAKVRLRPILMTVLSMVFGLIPLIM 967

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G +   S A  +  G+ V   + +F+   + +     + +  R
Sbjct: 968  AHGVGANGSRSLATGVIGGMTVGTLALLFLVPSLFIAFQFIQERVKR 1014


>gi|253689337|ref|YP_003018527.1| acriflavin resistance protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259495551|sp|C6DBC8|MDTC_PECCP RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|251755915|gb|ACT13991.1| acriflavin resistance protein [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 1026

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 63/604 (10%), Positives = 148/604 (24%), Gaps = 24/604 (3%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +     +        +      ++ L F   R     A 
Sbjct: 47  VSASLPGASPETMASAVATPLERALGRIAGVSEMTSTSSLGSTRVILVFNLDRDINGAAR 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    + L                 + V+    +        +       Q   +
Sbjct: 107 DVQAAINAAQNLLPSGMSSRPTYRKVNPSDAPVMI-LTLTSDTYSQGQLYDFASTQLSQK 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I   E           L  +    +P  L     +  ++       N  +          
Sbjct: 166 ISQMEGVGDVSIGGSSLPAVRVALNPVALFNQGISLDEVRQAIAQANVRQPLGNVENSQK 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    ++                           +                 +   
Sbjct: 226 SWQIKTNDELKTA--------------------DAYAPLIIHYNNGAAVRLSDVATVEDS 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +    +  +  A      +       +   T++        LRA         V +    
Sbjct: 266 VQNSRNAGMANAKPAILVMIRRAPDANIITTVDNIRAAMPELRASLPAEIQLDVAQDRSP 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S +  + +  I   LV++V+F+ +  G+   +   ++ +++I T A + L G +L 
Sbjct: 326 TIRASLAEVEQSLVIAVALVILVVFLFLRSGRATAIPALAVPVSLIGTFAAMYLCGFSLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I+V E I            +   G      T+   +++ +  
Sbjct: 386 NLSLMALTIATGFVVDDAIVVLENISRHIEAGMKPLQASLQGVREVGFTVLSMSLSLVAV 445

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L    G      R FA+T+ ++I+IS+  ++++   +   ++R    +S        
Sbjct: 446 FIPLLLMEGLPGRLFREFAVTLSVAIMISLLISLTLTPMLCARLLRAVPKRSQPRKQGFN 505

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+                   +L  +     L               Q        + 
Sbjct: 506 RVLLAMQQGYGRSLKWVLNHARWVLLLLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQ 565

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                S                 +        +  G       +   +K      V    
Sbjct: 566 ADQSISFQAMTVKLQNFMTIVSSDPAVDNVNGFTGGSRTNSGSMFISLKPLSERDVSAQQ 625

Query: 651 IQNT 654
           + + 
Sbjct: 626 VISR 629



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 6/218 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            ++R             +   + +    +     +   +   P I   L       VI  
Sbjct: 283 VMIRRAPDANIITTVDNIRAAMPELRASLPAEIQLDVAQDRSPTIRASLAEVEQSLVIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           A+ +L+                 + + +  T     L G   N  ++ A+    G+ V+D
Sbjct: 343 ALVILVVFLFLRSGRATAIPALAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
            +VV + +    +     +       + + E     +  S++     +P+ +     G +
Sbjct: 403 AIVVLENI---SRHIEAGMKPLQASLQGVREVGFTVLSMSLSLVAVFIPLLLMEGLPGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              FA+ ++  I+++   S+ +   +   +     K +
Sbjct: 460 FREFAVTLSVAIMISLLISLTLTPMLCARLLRAVPKRS 497



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 91/286 (31%), Gaps = 7/286 (2%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
            +            ++                  + +          ++ + +        
Sbjct: 736  ISTIYQPLNQYKVVMEVDDAYTQDVSSLNKMFVINSEGKPIPLSYFASWKPINAPLSVNH 795

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                  + +     +  D  + T  +E     +     +    +      + S+      
Sbjct: 796  QGLSAASTISFNLPEGTDLSSATAAIERTMTSLGVPSAVRGQFSGTAQAFQQSQSSQLLL 855

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            I+  II+   +L    +   +   L  ++TL       L     FG  F+L A+  ++ L
Sbjct: 856  ILAAIITVYIVLGV--LYESYVHPLTILSTLPSAGVGALLALEWFGAPFSLVALIGIMLL 913

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ D     +   +  +S +D I ++        + T++AA    LP+ + 
Sbjct: 914  IGIVKKNAIMMVD--FALVAQRSGKLSAQDAIFQACLLRFRPIMMTTLAALFGALPLVLT 971

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +     I +  G+V++   +++    + LF    R    +
Sbjct: 972  SGDGAELRQPLGITIVGGLVMSQILTLYTTPVVYLFFDKLRNIRRK 1017


>gi|227819855|ref|YP_002823826.1| ACR/RND family transmembrane transporter [Sinorhizobium fredii
           NGR234]
 gi|227338854|gb|ACP23073.1| putative ACR/RND family transmembrane transporter [Sinorhizobium
           fredii NGR234]
          Length = 1050

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/518 (13%), Positives = 157/518 (30%), Gaps = 42/518 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEV 60
           RN    ++L++M+   GLL        +  +  FP   +P   I+            LE 
Sbjct: 9   RNPVPSILLFAMLTVGGLLA-----FKRLPIQNFPDMDLPAISIT----------ATLEG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    ++  + L        ++      I +SF   +  E   ++V   + 
Sbjct: 54  AAPTQLETEVARTIEDQLASLSYLDHITTTITDGTVSIKVSFKLEKDSEEALNEVRNAVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L    +   +   T +  ++V        +     E S  I       +   +  
Sbjct: 114 SAKADLPAQMESPSVTKVTLQSAALVTYAIRSTHLNE--TELSWFIDNDMTKALLSVQGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q      I  ++  + DP+ +  L  T A +S           G +  +   R +    
Sbjct: 172 GQVSRVGGIDREVHVDLDPATMASLGVTAATVSAQLKSVQADTSGGLGEIGGTRQTLRTL 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V     + G+ +                         ++       ++    A     
Sbjct: 232 GAVASVDALKGLRI--------------------PLANGQQVRLDDIASVTDSFADRSSL 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L    +           S                A              VG  L +  
Sbjct: 272 AYLDGQPVTAVEVKRSNGFSDTGVAAEVEKAMQQFAAAHPD-VEIDEAYSTVGPILDNYD 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L ++V+++ +   +  +++  ++ L+VI T   + L   +L + ++  +
Sbjct: 331 GSMHMLIEGAILAVVVVWLFLRDWRATILSAVALPLSVIPTFLAMYLADFSLNIITLLAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+  E I    +  +    +          T+  + +T +   +   F 
Sbjct: 391 SLIVGILVDDAIVEVENIARHLQMGKRPIDAALEAADEIGWTVIATTLTLVAVFLPTAFM 450

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFII 515
            G      R F +T  +++L S+  A  +   M  + +
Sbjct: 451 SGIPGLLFRQFGVTAAVTVLASLVVARLLTPMMAAYFM 488



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 70/248 (28%), Gaps = 14/248 (5%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL-VRLQYQPGDSVAQTRVLEMVKK 640
            V  +    ++   ++  SL   D         K            +     +       
Sbjct: 252 QVRLDDIASVTDSFADRSSLAYLDGQPVTAVEVKRSNGFSDTGVAAEVEKAMQQFAAAHP 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +      ST+             LI   I+ V++              W   + +   L
Sbjct: 312 DVEIDEAYSTVGPILDNYDGSMHMLIEGAILAVVVVW-------LFLRDWRATILSAVAL 364

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +  T     L     N+  + A+  ++G  V+D +V  + +    +         D 
Sbjct: 365 PLSVIPTFLAMYLADFSLNIITLLALSLIVGILVDDAIVEVENI---ARHLQMGKRPIDA 421

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             ++ +E     + T++      LP A   G        F +  A  ++ +   +  +  
Sbjct: 422 ALEAADEIGWTVIATTLTLVAVFLPTAFMSGIPGLLFRQFGVTAAVTVLASLVVARLLTP 481

Query: 818 PILLFIYD 825
            +  +   
Sbjct: 482 MMAAYFMK 489



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 72/179 (40%), Gaps = 8/179 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
            + S EL +   + + I    +   + + F  +      +  L L +   L    + G  F
Sbjct: 837  QRSSELFQSFALAMAIGVFCVYAVLVVLFHDFLQPFTILMALPLSLGGALLPLVVTGTSF 896

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++ AV  +L L+G    + +++ +     +      +S  D +  + ++     V T++A
Sbjct: 897  SMPAVIGLLMLMGVVTKNSILLVE---YAIMSRRQGMSRFDALVDACHKRARPIVMTTIA 953

Query: 779  AFISVL--PMAVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                +L   +++ GG        AI +  G++ +   S+ +   I  F+ D  A   R+
Sbjct: 954  MGSGMLPAALSLTGGDSSFRQPMAIVVIGGVITSTLLSLIVIPVIFTFVDDLLAAIKRL 1012


>gi|197285446|ref|YP_002151318.1| multidrug efflux system subunit MdtC [Proteus mirabilis HI4320]
 gi|227355930|ref|ZP_03840322.1| multidrug resistance protein [Proteus mirabilis ATCC 29906]
 gi|194682933|emb|CAR43321.1| multidrug resistance protein [Proteus mirabilis HI4320]
 gi|227163918|gb|EEI48820.1| multidrug resistance protein [Proteus mirabilis ATCC 29906]
          Length = 1027

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 76/622 (12%), Positives = 170/622 (27%), Gaps = 46/622 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I   G L  +   +       +P       I+         +  L   
Sbjct: 9   QRPVATTLLSLAISLCGALGFMLLPVAPLPQVDYP------VIN--------IYASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S       ITL F  ++     A  V   L  
Sbjct: 55  SPETMASSVATPLERSLGRIAGIDEMTSSSALGSTSITLVFDLNKDINTAARDVQAALNA 114

Query: 122 VNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             S L      +     +   +  I++     +    +  E       +   +I   E  
Sbjct: 115 SQSLLPSGMPSRPRYYKSNPSDAPIMILTLTSE--TQNTGELYDLASTRLAQKISQIEGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +       L  +    +P  L     +   +       N  +          R      
Sbjct: 173 SEVSVGGGSLPAVRVALNPDALFNQNVSLDDVRKAISQSNVRRPQGFIHNDENRWQIQTN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +                       +    I                 +   +      
Sbjct: 233 DELSKA--------------------QDYRPIIVHYNQDAIVRLSDVAQVTDSVQNARAA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +         +   +A  +   T+         LR          V +        S +
Sbjct: 273 GMSGGEPAILLVIRREAGANIIETVNRIRDELPELRELLPASVNLKVAQDRTPTIRASLA 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +   AI   LV++V+F+ +  G+  L+   ++ +++I T + + L G +L   S+  +
Sbjct: 333 EVERALAIAVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFSAMYLCGFSLNNLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I+V E I            +   G S    T+   +I+ +   + L   
Sbjct: 393 TVATGFVVDDAIVVLENISRHIENGLKPKQAALKGVSEVGFTVLSMSISLVAVFIPLLLM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPLSRF 531
               G   + FAIT+  +I IS+F ++++   M   +++  K K+               
Sbjct: 453 DGLVGRLFKEFAITLTTAIGISLFVSLTLTPMMCAHLLKGIKPKAQSHLRGFGKLIFRLQ 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +       R+          + +   +      +     G +   V A++ +  
Sbjct: 513 QGYSVTLQAALRHKRWIMAIFITTLGLNAYLYISAPKTFFPDQDTGRLMGFVRADQSISF 572

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
             ++  +        + ++ D 
Sbjct: 573 QSMKEKMTRFMQEINADKDVDS 594



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 95/278 (34%), Gaps = 7/278 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
             +   + T+           I +    +  V LS V    +S+Q    +  +       
Sbjct: 223 DENRWQIQTNDELSKAQDYRPIIVHYNQDAIVRLSDVAQVTDSVQNARAAGMSGGEPAIL 282

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           LV  +    + +     +     ++ E++P S             R  + +    + I+ 
Sbjct: 283 LVIRREAGANIIETVNRIRDELPELRELLPASVNLKVAQDRTPTIRASLAEVERALAIAV 342

Query: 678 IAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +++ +++  +     L     + + +  T     L G   N  ++ A+    G+ V+D
Sbjct: 343 ALVILVVFLFLRSGRATLIPAVAVPVSLIGTFSAMYLCGFSLNNLSLMALTVATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +VV + +    +     +  +    K ++E     +  S++     +P+ +  G V   
Sbjct: 403 AIVVLENI---SRHIENGLKPKQAALKGVSEVGFTVLSMSISLVAVFIPLLLMDGLVGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              FAI +   I ++   S+ +   +   +       A
Sbjct: 460 FKEFAITLTTAIGISLFVSLTLTPMMCAHLLKGIKPKA 497



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 93/214 (43%), Gaps = 6/214 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +    +  +  +++ +TE+   +T++ T     +I +E I+  ++ ++ + + 
Sbjct: 803  TIAFNVPEGYTLSDAINAIERTMTELGVPNTVRGTFAGTAQIFQETIKSQLILILAAIVT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGVLYESYIHPLTILSTLPSAGVGALLALRLFDTPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D            +S ++ I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  IMVD--FAITAQREGKLSAQEAIIQASLLRFRPIIMTTLAALFGALPLMLSSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               I +  G++++   +++    I LF    R +
Sbjct: 981  PLGITIVGGLLMSQLLTLYTTPIIYLFFDGVRQR 1014


>gi|71736565|ref|YP_274832.1| multidrug RND efflux transporter, permease MdtB [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71557118|gb|AAZ36329.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 1036

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNELVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQCQAVRIKVNPEALAANSLNLSDVRNLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGGLRWVLRHQPLTLLAALATLALTVLLYIVVPKGFFPVQ 557



 Score = 80.9 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.8 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  ++    I ++        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVAPETAIYEAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      + +R
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLGRRWSR 1023


>gi|329915704|ref|ZP_08276300.1| Cation/multidrug efflux pump [Oxalobacteraceae bacterium IMCC9480]
 gi|327544853|gb|EGF30228.1| Cation/multidrug efflux pump [Oxalobacteraceae bacterium IMCC9480]
          Length = 1038

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/557 (11%), Positives = 161/557 (28%), Gaps = 39/557 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  +  ++   +  +GL       + +    +FP                   ++    
Sbjct: 9   RNPVFATMVMVALMVLGLASYRSLGVEKMPDVQFPFVF--------------IQVLYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    + + + ++     V S  + ++   + F  S   ++   +V   +  
Sbjct: 55  SPEAVENDITKPIENVVNTVRGVKKIVSSSFEGRSLTFIEFDLSANMDHGIQEVRDKIAT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V +    D K+  +    E    +             A   S    +  + ++       
Sbjct: 115 VRAAFPKDAKEPFVARQEENAQPVATLTLTSASGDMRA--LSTLSEQVVVKRLQNVAGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         Q+    DPSR+        ++     + N      +            + 
Sbjct: 173 QVTTGGNTSRQILINVDPSRMTAQNIGIDEVLRAIQITNQDMPAGVISRGPSEQLVRVEG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D                     +    I      +   F     +I           
Sbjct: 233 KIKDP--------------------RAFGKIVVARRASGPVFLDQVADIVDGEREETSIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          +     +            A +           +   N  +       
Sbjct: 273 RVNGQRAININITKVQDANIIEVGVGLKKAVAEMAKTLPAGSTLAIVNSNSDSVERQLDG 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T    A L ++++F+ +   +  ++   ++ ++V+ T   +   G T+   ++  + 
Sbjct: 333 VKATILEGAVLTMLIVFLFLHSWRSTIITGLTLPISVMATFIAMKAFGFTINALTLMALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +S   + + G S     +  +    +   V + F  
Sbjct: 393 LCIGLLIDDAIVVRENIVRHLGMGKSHKDAANDGTSEIGLAVMATTFAIVAVFVPVAFMD 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    F IT+ +++L+S+F + ++   +        + +   +  L R     +  
Sbjct: 453 GIIGRFFLQFGITVTVAVLVSLFVSFTLDPMLSSVWRDPVENRFRYLPWLGRLMERIEHG 512

Query: 539 AIQFMRARFWGVGISIL 555
             +        +  S+ 
Sbjct: 513 IDRLHLRYGRALEWSLR 529



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 85/251 (33%), Gaps = 12/251 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+A R      +    + +                 + +            V   +KK +
Sbjct: 244 VVARRASGPVFLDQVADIVDGEREETSISRVNGQRAININITKVQDANIIEVGVGLKKAV 303

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRK--GIVGVII--SAIAMLIYIWIRFKWYFALGAIT 698
            E+       +T  +    S  + R+  G+   I+  + + MLI       W   +    
Sbjct: 304 AEMAKTLPAGSTLAIVNSNSDSVERQLDGVKATILEGAVLTMLIVFLFLHSWRSTIITGL 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISF 757
           TL + +  T      FG   N   + A+   IG  ++D +VV    R+N+ +      S 
Sbjct: 364 TLPISVMATFIAMKAFGFTINALTLMALSLCIGLLIDDAIVV----RENIVRHLGMGKSH 419

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIF 814
           +D  +   +E     + T+ A     +P+A   G +      F I +   ++V+   S  
Sbjct: 420 KDAANDGTSEIGLAVMATTFAIVAVFVPVAFMDGIIGRFFLQFGITVTVAVLVSLFVSFT 479

Query: 815 IAAPILLFIYD 825
           +   +     D
Sbjct: 480 LDPMLSSVWRD 490



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 69/182 (37%), Gaps = 7/182 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
            V + V+  I  I     ++       +  ++++   +  + I+ I + + +  +F  + 
Sbjct: 818 DVNKEVQAIIKTIDLPDGVRFDVGGQAEQMKDMLGAAVAALGIAVIFIYLVLASQFGSFL 877

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  + +L L +   L    + G   N+ ++   + L+G    + +++ D         
Sbjct: 878 QPVAIMVSLPLSLIGVLLALLITGSTLNMFSIIGFIMLMGLVTKNAILLVDF---TNHSQ 934

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               S  D I  +    L   + T+MA    +LPMA+    GG         +  G++ +
Sbjct: 935 LAGQSQHDAILTAGQVRLRPILMTTMAMIFGMLPMALGIGDGGESQAPMGRAVIGGVITS 994

Query: 809 AS 810
             
Sbjct: 995 TL 996


>gi|307730166|ref|YP_003907390.1| acriflavin resistance protein [Burkholderia sp. CCGE1003]
 gi|307584701|gb|ADN58099.1| acriflavin resistance protein [Burkholderia sp. CCGE1003]
          Length = 1106

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 157/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+   +   +       FP+                    L    
Sbjct: 10  RPVATTLLAIGIALSGIFAFMKLPVAPLPQVDFPTIS--------------IQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +               +IT+ F  +R  +  A  V   +   
Sbjct: 56  PDTVATSVASPLERHLGSIADVTEMTSMSSVGSTRITMQFGLNRNIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N          + ++    +      A +            +   E   +
Sbjct: 116 RADLPASLRSNPTYHKVNPADAPIMI-LALTSKTLTAGQLYDSAATVLQQSLSQVEGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VDVSGSANPAVRVELEPQALFHYGIGLEDVRAALAAANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G +      N          D+                 +   +  + +  +
Sbjct: 217 --KGSIEFGQNRVQIYTNDQATKAAQYRDLVIAYRNGSAVKLSDVAEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   TI+    +   L A                    S    
Sbjct: 275 FNGKRSVLVILYRQPGANIIETIDRVTAMLPQLHASLPADVDITPTADRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  + +
Sbjct: 335 EHTLIIAVALVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +  +G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGVPRMKAAFLGAREVGFTVMSISISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R    +  +             + 
Sbjct: 455 IVGRLFREFALTLSLAIGVSLIVSLTLTPMMCSRLLREPHEQKEEGRFGRWLERGFASMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +    L     +  +  +   Y +  KG     
Sbjct: 515 RGYERTLGWALLHPRLILFILLATIGLNIWLYIVVPKGFFPQQ 557



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 90/265 (33%), Gaps = 7/265 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +   ++T+           + +       V LS V   ++S++              
Sbjct: 222 FGQNRVQIYTNDQATKAAQYRDLVIAYRNGSAVKLSDVAEVVDSVEDLRNLGLFNGKRSV 281

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            ++  +    + +     +  +  ++   +P               R  ++     +II+
Sbjct: 282 LVILYRQPGANIIETIDRVTAMLPQLHASLPADVDITPTADRSTTIRASLKDTEHTLIIA 341

Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              +++ +++  + W   L     + + I  T G   L G   +  ++ A+    G+ V+
Sbjct: 342 VALVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALTIATGFVVD 401

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-- 793
           D +VV + +    +     +           E     +  S++     LP+ + GG V  
Sbjct: 402 DAIVVLENI---SRHIENGVPRMKAAFLGAREVGFTVMSISISLVAVFLPILLMGGIVGR 458

Query: 794 -IGSFAIPMAFGIVVAASSSIFIAA 817
               FA+ ++  I V+   S+ +  
Sbjct: 459 LFREFALTLSLAIGVSLIVSLTLTP 483



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/238 (16%), Positives = 98/238 (41%), Gaps = 7/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S   G+         +     + +     V+ +   +++ + + EI   +TI  + 
Sbjct: 857  SAIASFGPGNTPLSVNHQSQFVASTISFNLPPGVSLSTATQVIYQTMAEIGMPATIHGSF 916

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++ +    + ++ +  A+ I + I ++ +   L  ++TL       L    LF
Sbjct: 917  QGTAQAFQQSMSDQPILILAALAAVYIVLGILYESYIHPLTILSTLPSAGVGALLALLLF 976

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              EF++ A+  V+ LIG    + +++ D   +  +      S RD I ++        + 
Sbjct: 977  KTEFSIIALIGVILLIGIVKKNAIMMVDFAIEASR---HGRSSRDAIHEACLLRFRPIMM 1033

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+ AA +  LP+A     G  +     I +  G++++   +++    + L++   R +
Sbjct: 1034 TTFAAMLGALPLAFGRGEGAELRAPLGIAIVGGLIMSQMLTLYTTPVVYLYMDRIRVR 1091


>gi|312114931|ref|YP_004012527.1| acriflavin resistance protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311220060|gb|ADP71428.1| acriflavin resistance protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 1048

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/611 (13%), Positives = 181/611 (29%), Gaps = 40/611 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ ++  +GL+           + RFP+                  +     
Sbjct: 11  RKPIPSLVLFLVLMTLGLIS-----FFSLGVTRFPNIDIPIVT---------VTITQSGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        S+    +  T+ F      +   + V   +  
Sbjct: 57  APVELESQVTKRVEDTVASVTGVKHVTSSITDGSSVTTIEFQLGTDTDRAVNDVKDAVSK 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L     + +      + + IV    +   +     E S  I      ++       
Sbjct: 117 VRQELPRTINEPITQRLDIEGLPIVTYAASAPSMTLE--ELSWFIDDTAARKLQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL  L  +  +++      N    G    +     S     
Sbjct: 175 QVSRVGGVKREIRVSLDPDRLIALGISAGEVNAQLHATNTDLAGGRGWLGGAEQSIRALA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++   +                       G R+        +           
Sbjct: 235 SATTVEHLAATSVTLP--------------------GGRKVRLDQLGTVSDATEERRTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           S     E      A L A    +    ++   V   LG+   
Sbjct: 275 TLNGRDVVAFTVVRAKGESDIVVAERVAAALATLAAAHPDVAFEKIDS-TVDFTLGNYES 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++V+F+ +   +  L+A  ++ L+V  T   + +LG +L + S+  I 
Sbjct: 334 AMHTLLEGAALAVLVVFLFLRDWRATLIAAIALPLSVFPTFWAMEMLGFSLNMVSLLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +    +T +     + F G
Sbjct: 394 LVTGILVDDAIVEIENIVRHIRMGKSPYRAALEAADEIGLAVIAITLTIVAVFAPVSFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F +T+  ++L S+F A  +   +  + +R K  +      + R +      
Sbjct: 454 GIAGQYFRQFGLTVAAAVLFSLFVARLLTPMIAAYFLRPKAHEDPRDGLIMRTYTRVIGW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            ++          +    SI S+ LL +  L      +    + +     +  + + ++ 
Sbjct: 514 TVRHYYRTLMLGFVVFAASIASVSLLPSGFLPAEDTNRSIFAIELPPGSRLGDTEIITSR 573

Query: 599 ESLQIGDISFQ 609
               I      
Sbjct: 574 AEAIIKRRPEV 584



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 70/233 (30%), Gaps = 7/233 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +        +F   +G       +    G+S                            
Sbjct: 262 TVSDATEERRTFATLNGRDVVAFTVVRAKGESDIVVAERVAAALATLAAAHPDVAFEKID 321

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +       +  ++  +A+A+L+       W   L A   L L +  T     + G
Sbjct: 322 STVDFTLGNYESAMHTLLEGAALAVLVVFLFLRDWRATLIAAIALPLSVFPTFWAMEMLG 381

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+ ++ A+  + G  V+D +V  + +   ++      S      ++ +E     +  
Sbjct: 382 FSLNMVSLLAITLVTGILVDDAIVEIENI---VRHIRMGKSPYRAALEAADEIGLAVIAI 438

Query: 776 SMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++       P++  G   G     F + +A  ++ +   +  +   I  +   
Sbjct: 439 TLTIVAVFAPVSFMGGIAGQYFRQFGLTVAAAVLFSLFVARLLTPMIAAYFLR 491



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 42/138 (30%), Gaps = 7/138 (5%)

Query: 671 VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +    + +   + I F  +   +  + +L L I   +    L     +L      L L
Sbjct: 849 YAMGAGVMMVFSVLVILFGSFLQPVAILLSLPLCIGGAIFALLLTDRPISLPVFIGFLML 908

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPM 786
           +G    + +++ D     +      +     I  +  +     V T++A           
Sbjct: 909 MGIVTKNAIMLVDFA---IVELRRGVPRGVAIIDAGRKRARPIVMTTIAMAGGMFPSALA 965

Query: 787 AVWGGSVIGSFAIPMAFG 804
              GG      AI +  G
Sbjct: 966 FGAGGEFRSPMAIAVIGG 983


>gi|297171756|gb|ADI22747.1| cation/multidrug efflux pump [uncultured Rhizobium sp.
           HF0500_29J11]
          Length = 1161

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/518 (13%), Positives = 157/518 (30%), Gaps = 40/518 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ ++  +G+     +      + RFP+                  +     
Sbjct: 11  RNPVPPILLFFVLVALGI-----SSFISLPITRFPNIDVPVV---------AVTITESGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    +     F      +   + V   +  
Sbjct: 57  APSELETQVTKKVEDAIAGISGVKHVTSTITDGSSVTAAEFRLEIDTDRATNDVKDAVAK 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L +   + ++     +  SIV              + S  +    I  +       
Sbjct: 117 IRSDLPLTIDEPVIQRIEVENQSIVTYAAASPGKTPE--QLSWFVDDVVIRALQGLNGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++    DP RL  L  T  +++                         N  
Sbjct: 175 RVERMGGVEREIQVRLDPDRLAALGVTAGEVNRQLRST-------------------NVD 215

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   + E  G      T +             +   G +       + +          R
Sbjct: 216 LSGGRGEFGGQEQAIRTLSSADTVQGLAETRIYLRGGRQVRLAELGEVVDNWEKPRSFAR 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +   PV+  A    +++ + + T+      A    A + P       + +V    G+   
Sbjct: 276 LDGRPVV--AFSIYRSKGASDTTVADRAAEAVAKLAAANPDVTFSKIDDSVTYTYGNFES 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A  A L +IV+ + +   +   VA  ++ L  I T   + L+G +L L S+  I 
Sbjct: 334 AMETLAEGALLAVIVVLLFLRDWRATAVAAITLPLAAIPTFWAMDLMGFSLNLVSLLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I       +  + +           +    +T +     + F G
Sbjct: 394 LVTGILVDDAIVEIENIERHIGMGKKPYRAAMEAADEIGLAVIAITMTIIAVFSPVSFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
              G   + F +T+ +++  S+  A  I   +  +   
Sbjct: 454 GIAGQYFKQFGLTVAVAVFFSLLVARLITPMLAAYFFH 491



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 88/255 (34%), Gaps = 7/255 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +        SV   ++  +  G         ++  LV++           +  E +    
Sbjct: 845  LRVTTGTGASVPLDSVADIGFGQGPSTIDRYDRERLVKVGTSMAPGYEIGQGSERIMSLP 904

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                    ++  E+   +I  E+       +    + +L+ + + F   F  L  + +L 
Sbjct: 905  AVKNLPPGVRIQEVGDAEIQGEVFAGFASAMSAGIMMVLVVLILLFGSVFLPLTILASLP 964

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L +   +G   L     ++  V  +L L+G    + +++ D   +        +   + I
Sbjct: 965  LSVGGVVGALLLTHTAISMPVVIGILMLMGIVTKNSIMLVDFAVE---QEKHGMPQTEAI 1021

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +  +     + T++A    ++P A+    GG      AI +  G++V+   S+     
Sbjct: 1022 IDAGRKRARPIIMTTLAMAAGMVPAAMATGEGGEFRAPMAIAVIGGLLVSTVLSLIFIPS 1081

Query: 819  ILLFIYDWRAKNARI 833
            +   + D      R+
Sbjct: 1082 LYTLMDDLSHTVGRL 1096



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 74/249 (29%), Gaps = 6/249 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             ++ +   R V L+ +   +++ +      +            + +             
Sbjct: 244 ETRIYLRGGRQVRLAELGEVVDNWEKPRSFARLDGRPVVAFSIYRSKGASDTTVADRAAE 303

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K+    P  T    +                    + +A+++ +     W     A 
Sbjct: 304 AVAKLAAANPDVTFSKIDDSVTYTYGNFESAMETLAEGALLAVIVVLLFLRDWRATAVAA 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            TL L    T     L G   NL ++ A+  + G  V+D +V  + +     +      +
Sbjct: 364 ITLPLAAIPTFWAMDLMGFSLNLVSLLAITLVTGILVDDAIVEIENI--ERHIGMGKKPY 421

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
           R  ++ +    L     T M       P++  GG        F + +A  +  +   +  
Sbjct: 422 RAAMEAADEIGLAVIAIT-MTIIAVFSPVSFMGGIAGQYFKQFGLTVAVAVFFSLLVARL 480

Query: 815 IAAPILLFI 823
           I   +  + 
Sbjct: 481 ITPMLAAYF 489


>gi|300936618|ref|ZP_07151522.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 21-1]
 gi|300458199|gb|EFK21692.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 21-1]
          Length = 1025

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNISLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNISLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|260435722|ref|ZP_05789692.1| protein-export membrane protein SecD [Synechococcus sp. WH 8109]
 gi|260413596|gb|EEX06892.1| protein-export membrane protein SecD [Synechococcus sp. WH 8109]
          Length = 493

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 132/502 (26%), Positives = 223/502 (44%), Gaps = 53/502 (10%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQ 93
            + +  + LGLDLRGGS L +EV     +       ++     L   +   G+   +++ 
Sbjct: 21  FLVRTPLELGLDLRGGSQLTVEVKPAGEITRVGAEEMEAVKAVLDRRVNGLGVAESTLQT 80

Query: 94  -IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             ++++ L     +   + A  +             D     L                 
Sbjct: 81  VGESQLVLQLPGEQDPTSAARVLGDTALLEFRAQKADTDAEFL----------------- 123

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
              +     Q   I+R R DQI   E                   +P  L QL  T   +
Sbjct: 124 --GLRQLRSQVEAILRLREDQIRRGE-----------------TPEPLDLAQLKSTQQTL 164

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH-LNGATANFDPKTHKPVVD 271
                  +  ++      +   D       + +   ++G   +           +   V 
Sbjct: 165 GLDGQASSEEEQLRQLLNKVDSD----LLTMLEPAALTGKQLVTAGRQPLQNNPNSWEVT 220

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP-------SGKAQISGNFT 324
           ++FD  GA  F ++T+   G    + +          +            G A ISGNF+
Sbjct: 221 LNFDGEGAEAFADLTKSIAGTDRLLAITLDDQLISAASVGPQFKSAGISGGAATISGNFS 280

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            ETA  L   LR GSLP+ + ++E R +G  LG+++I +   A +AGL L+ +FM+V Y 
Sbjct: 281 AETARELEVKLRGGSLPLPVEVIEVRTIGPTLGAENIRRSLVAALAGLALVAVFMLVAYR 340

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             G VA  ++ L  +  LA+ +L+  TLTLP IAG +L IG+AVD+N+L+ ERI++E R+
Sbjct: 341 LPGAVAVMALSLYALFNLAVYALIPVTLTLPGIAGFILSIGMAVDANVLIFERIKDELRR 400

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
             ++  S+D GFS A+S+I D ++T LI+   LFF G G V+GFA T+G+ +L+S+FTA+
Sbjct: 401 GNTLIRSIDTGFSEAFSSIVDGHLTTLISCAALFFLGTGLVKGFAATLGIGVLLSLFTAL 460

Query: 505 SIVRAMMIFIIRYKKMKSIDIN 526
           +  R ++ F++ Y  ++     
Sbjct: 461 TCTRTLLRFLMGYAGLRRASNF 482



 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 77/171 (45%), Gaps = 4/171 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E IR+ +V  +     + +++ + ++   A+ A+  L L     L  +AL  
Sbjct: 307 TIGPTLGAENIRRSLVAALAGLALVAVFMLVAYRLPGAV-AVMALSLYALFNLAVYALIP 365

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++      +    ID   +E     V  
Sbjct: 366 VTLTLPGIAGFILSIGMAVDANVLIFERIKDELR---RGNTLIRSIDTGFSEAFSSIVDG 422

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +   IS   +   G  ++  FA  +  G++++  +++     +L F+  +
Sbjct: 423 HLTTLISCAALFFLGTGLVKGFAATLGIGVLLSLFTALTCTRTLLRFLMGY 473


>gi|324114501|gb|EGC08470.1| AcrB/AcrD/AcrF family protein [Escherichia fergusonii B253]
          Length = 1025

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIVHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|188993366|ref|YP_001905376.1| RND superfamily protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|167735126|emb|CAP53338.1| RND superfamily protein [Xanthomonas campestris pv. campestris]
          Length = 1101

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/556 (10%), Positives = 154/556 (27%), Gaps = 40/556 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I  +G+L        Q  +   P     + +                 
Sbjct: 28  RRPIATSLLMAGILLLGIL-----GYRQLPVSALPEIDAPSLV---------VTTQYPGA 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + I L F+  R  +  A  V   ++ 
Sbjct: 74  NATTMASLVTTPLERQFGQISGLQMMTSDSSAGLSTIILQFSMDRNIDIAAQDVQAAIRQ 133

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +L+   +        E +         ++       
Sbjct: 134 AT--LPSSLPYQPVYNRVNPADAAILT-LKLTSDTLPLREVNRYADAILAQRLSQVPGVG 190

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N S        +    S G   
Sbjct: 191 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRSALTQTNVSAPKGSLNGKTQSYSIGTND 250

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  +                      +                  +   +       
Sbjct: 251 QLTDAAQ--------------------YRETIISYNNGAPVRLADVAKVVDGVENDQLAA 290

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E    +   L+          V          S   
Sbjct: 291 WADGKPAVLLEIRRQPGANIVQTVEQIRSILPQLQGVLPADVHLDVFSDRTETIRASVHE 350

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+F+ +      ++   ++ L++  T  +++  G +L   S+  +V
Sbjct: 351 VKFTLVLTIFLVVAVIFVFLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALV 410

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   T+    ++ +   + L    
Sbjct: 411 VATGFVVDDAIVMIENIVRYIEQGKSGPEAAEIGARQIGFTVLSLTVSLVAVFLPLLLMP 470

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  + ++++ISM  ++++   M  ++++   +   +             +
Sbjct: 471 GVTGRLFHEFAWVLSIAVVISMLVSLTLTPMMCAYLLKPDALPEGEDAHERAAAEGKTNL 530

Query: 539 AIQFMRARFWGVGISI 554
             + +      +   +
Sbjct: 531 WTRTVGVYERSLDWVL 546



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 24/255 (9%), Positives = 85/255 (33%), Gaps = 10/255 (3%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++        +    + +   +        +    V L+ +     
Sbjct: 249 NDQLTDAAQYRETIISYNNGAPVRLADVAKVVDGVENDQLAAWADGKPAVLLEIRRQPGA 308

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----IVGVIISAIAMLIYIW 685
              + +E ++  + ++  +        V    +  +           V+   + + +   
Sbjct: 309 NIVQTVEQIRSILPQLQGVLPADVHLDVFSDRTETIRASVHEVKFTLVLTIFLVVAVIFV 368

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
              + +  +     + L +  T G  A  G+  +  ++ A++   G+ V+D +V+ + + 
Sbjct: 369 FLRRLWATIIPSVAVPLSLAGTFGVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI- 427

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
             ++      S  +  +    +     +  +++     LP+ +  G        FA  ++
Sbjct: 428 --VRYIEQGKSGPEAAEIGARQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLS 485

Query: 803 FGIVVAASSSIFIAA 817
             +V++   S+ +  
Sbjct: 486 IAVVISMLVSLTLTP 500



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/234 (11%), Positives = 92/234 (39%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L   ++ +        ++   V + +      + ++ +  +++   ++   + +    
Sbjct: 842  AALAEAKVTNTPLVVSHQQQLPAVTISFNLAPGHSLSQAVAAIEQARADLKIPTQVHAEF 901

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +             +  ++ S + + I + + ++ +   L  I+TL       L    + 
Sbjct: 902  VGKAAEFTGSQTDIVWLLLASIVVIYIVLGVLYESYIHPLTIISTLPPAGVGALLALMVC 961

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++  +  ++ LIG    + +++ D   +  +   T ++  + I ++        + 
Sbjct: 962  GLSLSVDGIVGIVLLIGIVKKNAIMMIDFAIEARR---TGVNAHEAIRRACLLRFRPIMM 1018

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA +  LP+A+    G  +     I +  G++++   +++    I L++  
Sbjct: 1019 TTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTTPVIYLYMER 1072


>gi|226943552|ref|YP_002798625.1| AcrB/AcrD/AcrF family acriflavin resistance protein [Azotobacter
           vinelandii DJ]
 gi|226718479|gb|ACO77650.1| acriflavin resistance protein AcrB/AcrD/AcrF family [Azotobacter
           vinelandii DJ]
          Length = 1037

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/607 (12%), Positives = 169/607 (27%), Gaps = 49/607 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R     +++   +   GLL           +   P                   +     
Sbjct: 9   RRPIATLLIMLAVLLSGLLA-----YRILPIAALPQVDYPT-----------IQVTTFYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 +   +    +     +        +     + ITL F      +    +V   +
Sbjct: 53  GAGPQVMLTAVTAPLERQLGQMSGLSQMYSTSSGGASVITLKFNLDLSLDEAEQEVQAAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
              +S L  D              S VL+     +     IE    I  +   ++     
Sbjct: 113 NAADSLLPSDLPNPPTYKKVNPADSAVLTLAASSE-SLPLIEVQDLINTRIALKLSQVSG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                 +      +    DP  L         +                        +G 
Sbjct: 172 VGLVSLAGGQQSAIRIRVDPVALAAHGLAPENV--------------------YELVNGA 211

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                        H     AN   ++     ++       +        ++ +    +  
Sbjct: 212 NVNGSKGGFDGPDHSVTIDANDQLRSAAEYAELVLTYEDGKALRLRDVASLDEAPENLYQ 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                A          +   +    +++   L   LR          V          S 
Sbjct: 272 RAWAGAKQAIVINIQRQPGANVIQVVDSIEALLPSLRDSLPGAVELEVLADRTQTIRASV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              +    +   LV++V F+ +      L+   ++ L++I +  ++ L G +L   ++  
Sbjct: 332 EDVQLELILSVALVVLVSFIFLRNLAGTLIPSVAVPLSLIGSFGVMYLAGFSLNNLTLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + +  G  +D  I+V E I+    + +    +   G +    T+    ++ +   + L F
Sbjct: 392 LTIATGFVIDDAIVVVENIQRHLEEGEPPLQAALKGSAEIVFTVVSLTLSLIAVLIPLLF 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            G   G   R F+IT+ +SIL+SMF ++++   +  +++R+                   
Sbjct: 452 MGDVVGRLFREFSITLAVSILVSMFVSLTLTPMLCAYLLRHIPAAEESRFSRWGGLQFER 511

Query: 537 CIAIQFMRARFW-------GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            +A+     R+         +      ++ +   LF     + I   G +Q  V A + V
Sbjct: 512 LVAVYDRALRWVLAHQGFTLLVAVSTLALTAALYLFVPKGFFPIQDTGQLQGIVQAPQNV 571

Query: 590 DLSVVRS 596
               +  
Sbjct: 572 SFEEMSR 578



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 84/239 (35%), Gaps = 10/239 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R      +  +  +Q         + +  Q        +V++ ++  +  +        
Sbjct: 256 LRDVASLDEAPENLYQRAWAGAKQAIVINIQRQPGANVIQVVDSIEALLPSLRDSLPGAV 315

Query: 654 TEIVGPKISRELI---RKGIVGVIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLG 709
              V    ++ +        + +I+S   +++  +I  +     L     + L +  + G
Sbjct: 316 ELEVLADRTQTIRASVEDVQLELILSVALVVLVSFIFLRNLAGTLIPSVAVPLSLIGSFG 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G   N   + A+    G+ ++D +VV + +    +             K   E +
Sbjct: 376 VMYLAGFSLNNLTLMALTIATGFVIDDAIVVVENI---QRHLEEGEPPLQAALKGSAEIV 432

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              V  +++    ++P+   G   G +   F+I +A  I+V+   S+ +   +  ++  
Sbjct: 433 FTVVSLTLSLIAVLIPLLFMGDVVGRLFREFSITLAVSILVSMFVSLTLTPMLCAYLLR 491


>gi|104783700|ref|YP_610198.1| multidrug efflux RND transporter [Pseudomonas entomophila L48]
 gi|95112687|emb|CAK17415.1| putative multidrug efflux RND transporter [Pseudomonas entomophila
           L48]
          Length = 1028

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/626 (10%), Positives = 179/626 (28%), Gaps = 52/626 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++ ++I   G++        +  + ++P                   + +  
Sbjct: 8   LRRPVLALVVSTLILLFGIMA-----FTKLPVRQYPMLETST-------------ITITT 49

Query: 61  DEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                 +  +         +  + ++       S  Q ++ +T+    +    N   +V 
Sbjct: 50  QYPGASSELMQGFVTQPISQAVASVEGIDYLSSSSTQGKSLVTVRMQLNSNSINALTEVM 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  +  KL  +    ++  T+    S+     + +Q+     E +  I R        
Sbjct: 110 AKVNQIRYKLPAEAYDPVIERTSGGFTSVAYVAFSSEQLSM--PEVADYISRVVEPMFSG 167

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +        + +    DP  L     T   ++      N           ++  +
Sbjct: 168 IDGVAKINVLGGQTMSMRLWLDPDLLAGYGITGQDVADAIKENNFQAAPGQVKGLYVVSN 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +    +                      D+                 +    A 
Sbjct: 228 LRINTDLTSVEDFK--------------------DMVLRNDNGNIIRVRDVGTVELNAAS 267

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 ++A              +    +     L   +     P     +         
Sbjct: 268 FDTSGAMSAVPAMFLGLDAAPTGNPLTIVNAVKALIPEIEKTLPPGVKVQIPFEVAHFIQ 327

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      +V++V+++ +   +  L+   +I L+++    L+ + G +L L +
Sbjct: 328 SSIDEVTHTLIEALVIVVLVIYLCLGTFRTVLIPLVTIPLSMLGAAVLMQMFGFSLNLLT 387

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  +VL IGL VD  I+V E +       ++ F +  +G       +     T       
Sbjct: 388 LLAMVLAIGLVVDDAIVVVENVHRHIEDGKTPFEAALLGAREVAGPVVAMTFTLAAVYAP 447

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPL 528
           +   G   G   + FA+T+  S+++S   A+++   M   ++  K          +    
Sbjct: 448 IGLMGGLTGTLFKEFALTLAGSVVVSGIVALTLSPIMSTRLLDAKSSEGYMAHKAEAFFN 507

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    + +   +         ++F    +           ++ +  +   + A + 
Sbjct: 508 WLAERYGKLLGVSLSKRWISLAIALVIFFSLPVLYKSAQSELAPLEDQNILLTAIKAPQH 567

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGE 614
            +++ V +  E L      F     +
Sbjct: 568 ANINYVEAFSEKLHEVFKEFPEGYSD 593



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 65/196 (33%), Gaps = 8/196 (4%)

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAIT 698
            +TE         T        + +     + +  +   ++IY+ +      +      + 
Sbjct: 818  LTEQAKQFPAGYTYDWQSDTRQFVQEGNTLVLTFAFALVIIYLVLAVQYESFIDPFIILI 877

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            ++ L I   L   AL     N+     ++TLIG      +++     +        +   
Sbjct: 878  SVPLSICGALLPLALGYTSLNIYTQIGLITLIGLISKHGILMVAFANE--LQMHHGMGKL 935

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            + I  +    L   + T+ A  + + P+      G +      + +  G+++    ++FI
Sbjct: 936  EAIRHAAEVRLRPILMTTAAMVVGLAPLIFATGAGANSRFGLGLVIVVGMLIGTLFTLFI 995

Query: 816  AAPILLFIYDWRAKNA 831
               +   +   R   A
Sbjct: 996  LPTVYSLLSTARQPKA 1011



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 72/195 (36%), Gaps = 10/195 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A   ++  ++K +   V +               E+    I  ++I  + + + +    
Sbjct: 297 NAVKALIPEIEKTLPPGVKVQIPFEVAHFIQSSIDEVTHTLIEALVIVVLVIYLCLGTFR 356

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ L +        +FG   NL  + A++  IG  V+D +VV + +    
Sbjct: 357 TVLIPL---VTIPLSMLGAAVLMQMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVH--- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      +  +       E  G  V  +        P+ + G   G++   FA+ +A  +
Sbjct: 411 RHIEDGKTPFEAALLGAREVAGPVVAMTFTLAAVYAPIGLMGGLTGTLFKEFALTLAGSV 470

Query: 806 VVAASSSIFIAAPIL 820
           VV+   ++   +PI+
Sbjct: 471 VVSGIVAL-TLSPIM 484


>gi|323968211|gb|EGB63620.1| AcrB/AcrD/AcrF family protein [Escherichia coli M863]
 gi|327253209|gb|EGE64863.1| multidrug resistance protein mdtC [Escherichia coli STEC_7v]
          Length = 1025

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 166/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTATE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+   +   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATTIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 70/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+                 + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATTIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|331647729|ref|ZP_08348821.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli M605]
 gi|330911913|gb|EGH40423.1| multidrug transporter MdtC [Escherichia coli AA86]
 gi|331043453|gb|EGI15591.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli M605]
          Length = 1025

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|288940328|ref|YP_003442568.1| acriflavin resistance protein [Allochromatium vinosum DSM 180]
 gi|288895700|gb|ADC61536.1| acriflavin resistance protein [Allochromatium vinosum DSM 180]
          Length = 1024

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/545 (13%), Positives = 163/545 (29%), Gaps = 40/545 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L++++  +G L  +        + +F      +               L   
Sbjct: 9   RNPIPAILLFALLAFMGTLSFM-----AMKVQQFMDIDLPSVR---------VSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + L+        ++     +T  F   +  +   D V   +  
Sbjct: 55  APALLETEVARKIENAIASLQGIKHIYTKVQDGTATVTAEFRLEKPTQEAVDDVRDAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D ++ ++       + I+    +  ++   A   S  +      ++       
Sbjct: 115 IRSDLPGDLEEPIVAKIDLTGLPILSYTVDSPRLDEEA--LSWFVDNTLARRLLSVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++  E DP RL  L  T A +S           G    +     S     
Sbjct: 173 AVSRVGGVDREVRIELDPDRLLALRVTAADISRQLRRIQREDSGGRADLGGAEQSVRTLA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E++ + ++                        RR        +   +A      
Sbjct: 233 TVRTAAELAELDISL--------------------SDGRRIRLGQVATVTDTIAERRSAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +                 E      A L A    I++       V   + +   
Sbjct: 273 LLDGRPVVGFEVVRSRGAGELEVAEGVRAELARLHAEHPDIEVVE-SFNFVDPVVENFEG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V++  +   +  LV+  ++ L+++ T A + LLG TL + ++  + 
Sbjct: 332 SMSLLLEGAVLAVLVVWAFLRDWRATLVSATALPLSILPTFAAMYLLGFTLNVVTLLSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVIGVLVDDAIVEIENIMRHLRMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F  T  +++ +S+  A  +   M  +++   +        L     +    
Sbjct: 452 GVAGKFFVQFGWTAAIAVFVSLVVARLLTPMMAAYLLHPPRRLHDRPRWLDTVVRLSGFC 511

Query: 539 AIQFM 543
                
Sbjct: 512 VRHRW 516



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 79/246 (32%), Gaps = 6/246 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +   R + L  V +  +++     +             ++ +    +     +     
Sbjct: 245 ISLSDGRRIRLGQVATVTDTIAERRSAALLDGRPVVGFEVVRSRGAGELEVAEGVRAELA 304

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           ++    P   +  +      +         + +  + +A+L+       W   L + T L
Sbjct: 305 RLHAEHPDIEVVESFNFVDPVVENFEGSMSLLLEGAVLAVLVVWAFLRDWRATLVSATAL 364

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L I  T     L G   N+  + ++  +IG  V+D +V  + +   M+      +    
Sbjct: 365 PLSILPTFAAMYLLGFTLNVVTLLSLSLVIGVLVDDAIVEIENI---MRHLRMGKTPYQA 421

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
             ++ +E     + T+       LP A   G        F    A  + V+   +  +  
Sbjct: 422 AMEAADEIGLAVIATTFTLIAVFLPTAFMSGVAGKFFVQFGWTAAIAVFVSLVVARLLTP 481

Query: 818 PILLFI 823
            +  ++
Sbjct: 482 MMAAYL 487



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 74/187 (39%), Gaps = 8/187 (4%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
              T +   ++  EL     + ++   + +   + + F+ +      +  L+L I      
Sbjct: 831  FQTTVGDAEVMGELFASFGLAMLTGVLCIYAVLVLLFRDFVQPATILAALVLSIPGAFLA 890

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              + G   ++ ++  ++ L+G +  + +++ D +   +      ++  + +     +   
Sbjct: 891  LFVTGSALSMPSMIGLIMLMGIATKNSILLIDYI--ILARREHGLNRWEALLDGCRKRAR 948

Query: 771  RSVYTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              + T++A    +LP+A  G     SF    AI +  G++ +   S+ +   +   + D 
Sbjct: 949  PIIMTTLAMGAGMLPIA-LGIGTDPSFRAPMAIVVIGGLITSTFLSLLVVPVVYTLVDDG 1007

Query: 827  RAKNARI 833
              +  R+
Sbjct: 1008 IERMRRL 1014


>gi|254198144|ref|ZP_04904566.1| multidrug resistance protein MdtB [Burkholderia pseudomallei S13]
 gi|169654885|gb|EDS87578.1| multidrug resistance protein MdtB [Burkholderia pseudomallei S13]
          Length = 1036

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|254188270|ref|ZP_04894781.1| multidrug resistance protein MdtB [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157935949|gb|EDO91619.1| multidrug resistance protein MdtB [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 1036

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|304410202|ref|ZP_07391821.1| acriflavin resistance protein [Shewanella baltica OS183]
 gi|307302087|ref|ZP_07581845.1| acriflavin resistance protein [Shewanella baltica BA175]
 gi|304351611|gb|EFM16010.1| acriflavin resistance protein [Shewanella baltica OS183]
 gi|306914125|gb|EFN44546.1| acriflavin resistance protein [Shewanella baltica BA175]
          Length = 1047

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 59/572 (10%), Positives = 159/572 (27%), Gaps = 39/572 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGIVS-----FSKLSIREMPDVESPVVT---------ISTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SAAIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D K  ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPEDAKDPVVSKDNGSGEPSVYVNLSSS--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   ++      N    G                
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDITNALRKENIETPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 217 ---GQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNISLGIIAQSDANPLLVAKEVHQEVDRVQDFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++LG ++ L ++  ++
Sbjct: 334 VYSTLYVTGALVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANMLGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G        F++ + +S+L S   A+++   +    +    K    +      F  +   
Sbjct: 454 GMVGLLFTEFSVMLAVSVLFSSLVALTLTPVLSSKLLKANVKPNRFNRWVDRGFARMESV 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGL 569
             +   RA    +   ++   C     +    
Sbjct: 514 YRVAVTRAIKLRLLAPLVIIACIGGSAWLMQQ 545



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 88/284 (30%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L            V + V +++  +        + +V    +  + R        +
Sbjct: 279 VNISLGIIAQSDANPLLVAKEVHQEVDRVQDFLPEGTSLVVDFDSTVFIDRSINEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        + G   NL  + A++  IG
Sbjct: 339 YVTGALVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAANMLGYSINLLTLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVLFSSLVALTLTPVLSSKLLKANVKPNR 498



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        L     N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLLLTSQGINIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L          I  + +  L   + T+    +  +P+      G     +    + FG+
Sbjct: 931  QLRDRGFELDKAIIDASSRRLRPILMTAFTTLVGAVPLIFSTGAGSESRIAVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFI 823
              A   ++ +   +   I
Sbjct: 991  AFATFVTLLVIPAMYRLI 1008


>gi|282899828|ref|ZP_06307790.1| protein-export membrane protein [Cylindrospermopsis raciborskii
           CS-505]
 gi|281195310|gb|EFA70245.1| protein-export membrane protein [Cylindrospermopsis raciborskii
           CS-505]
          Length = 468

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 135/485 (27%), Positives = 215/485 (44%), Gaps = 63/485 (12%)

Query: 43  RISLGLDLRGGSHLVLEV----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97
            + LGLDL+GGS L ++V       +  +  L+     +   +   G+    ++ +  +K
Sbjct: 26  PVPLGLDLQGGSQLTIQVKPTEQIKEITDRELEAVKKVVEGRINGLGVSEPIIQTVGKDK 85

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I +        +   + +    Q        D +                +     +V  
Sbjct: 86  ILVQLPGVNDPQQAENVLGGTAQLEFRLQKPDTE----------------TLLQSLRVSQ 129

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
             I+   E +R+  D+  I+ +  +   +++ + +L    DP    + L           
Sbjct: 130 LDIKSKQETLRKGKDENAIAANQAELKKNYQAIAELFASTDPPLTGKYLKDAY------- 182

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                 +G  + V    D++G     E   +++G          +     P V + F   
Sbjct: 183 --GEPTQGKNWNVALRFDNEGGALFAELTKQLAGTGRGIGIFLDNELISSPSVGVEFAAT 240

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
           G                                 I  G A I+G F  E A  L   LR 
Sbjct: 241 G---------------------------------ITGGSAIITGRFQAEEANNLGVQLRG 267

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           G+LP+ + I E R VGA LG DSI     A + GL L+++FM++ Y   GL+AD S+ + 
Sbjct: 268 GALPVPVEIAERRTVGATLGQDSIQSSIYAGIGGLALVLVFMVLYYRLPGLIADISLIIY 327

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
            ILT A  SLLG TLTLP IAG +L IG+AVD+N+L+ ER REE R  ++++ S++ GF 
Sbjct: 328 AILTWATFSLLGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRSGKTLYRSVESGFY 387

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           RA+S+I DSN+T  IA   LF+ G G V+GFA+T+ L + +SMFTAI+  R +M   I +
Sbjct: 388 RAFSSILDSNVTTWIACAALFWLGSGLVKGFALTLALGVAVSMFTAITCSRTLMFLAISF 447

Query: 518 KKMKS 522
              + 
Sbjct: 448 PSWRK 452



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ I+  I   I     +L+++ + ++    L A  +LI+    T   F+L G+ 
Sbjct: 283 GATLGQDSIQSSIYAGIGGLALVLVFMVLYYRLP-GLIADISLIIYAILTWATFSLLGVT 341

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++   +  +    ++          + +++
Sbjct: 342 LTLPGIAGFILSIGMAVDANVLIFERTREELR---SGKTLYRSVESGFYRAFSSILDSNV 398

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             +I+   +   G  ++  FA+ +A G+ V+  ++I  +  ++  
Sbjct: 399 TTWIACAALFWLGSGLVKGFALTLALGVAVSMFTAITCSRTLMFL 443


>gi|167823522|ref|ZP_02454993.1| multidrug resistance protein MdtB [Burkholderia pseudomallei 9]
 gi|226198595|ref|ZP_03794161.1| multidrug resistance protein MdtB [Burkholderia pseudomallei
           Pakistan 9]
 gi|225929338|gb|EEH25359.1| multidrug resistance protein MdtB [Burkholderia pseudomallei
           Pakistan 9]
          Length = 1036

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 148/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNVKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLI 509



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNVKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|86145150|ref|ZP_01063481.1| Cation/multidrug efflux pump [Vibrio sp. MED222]
 gi|85836727|gb|EAQ54847.1| Cation/multidrug efflux pump [Vibrio sp. MED222]
          Length = 1039

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 62/531 (11%), Positives = 155/531 (29%), Gaps = 38/531 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              +  ++   +  IGL+           +  +PS  P               +V  +  
Sbjct: 9   RPKFAFVISIFLTLIGLIAI-----KTMPISEYPSVTPPQ-----------VRVVAFMPG 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFL 119
              + V   +    +E  + +                 + ++F +S   +     V+  +
Sbjct: 53  ASAETVKEVIGNPIEEEVNGVDGMVYMQSRSTNDGRYFLNITFDNSVDADMAMVNVSNRV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               + L  + +   +         ++      +      +E +  +    +++I     
Sbjct: 113 AVAENMLPFEVRARGVRIRKAAPDDLLAIAFYSEDQSMSELELNSWVEANFMERIARISG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    D  R+  L  TT  +       N        G    R++   
Sbjct: 173 LASSDLIGA-TYGMRVWLDMDRMASLGVTTFDVKNAIREQNAVVPAGRIGQGPSRENAAL 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q+ +  +  +S                +    I        + +     N+         
Sbjct: 232 QFNLITQGRLSSAE-------------EFEQIIVKTLADGNQIYLKDVSNVEIGSQFYDA 278

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                               +   T      +   + +         +      +   S 
Sbjct: 279 YATYNGGDAALVAMQANPDANALETGAAVKSVLKDIESIMPAGMTYAIPYDTTLSVEASI 338

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T  +  GLV+ V ++ +   +  L    +I +++I T A + L G ++   ++ G
Sbjct: 339 RSIVETLIVAVGLVIAVTYLFLGNVRTTLAPVIAIPVSLIGTFAFMQLGGFSINTVTLFG 398

Query: 420 IVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV- 476
           ++L IG+ VD+ ILV E +       +      + +         I  S +  L   +  
Sbjct: 399 LILAIGIVVDNAILVVENVERILNENQTIDAKEATNRAMKEVTGPIVASTLVMLAVFIPV 458

Query: 477 --LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             L    G     F+IT+ +++++S   A+++  A+   +++     +   
Sbjct: 459 ALLPGITGLMFAQFSITICIALVLSAINALTLSPALCAMVMKRNPKPAKWF 509



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 96/255 (37%), Gaps = 5/255 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +     + L  V +     Q  D       G+   +        +++     ++ V K 
Sbjct: 254 TLADGNQIYLKDVSNVEIGSQFYDAYATYNGGDAALVAMQANPDANALETGAAVKSVLKD 313

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           I  I+P                  IR  +  +I++   ++   ++        L  +  +
Sbjct: 314 IESIMPAGMTYAIPYDTTLSVEASIRSIVETLIVAVGLVIAVTYLFLGNVRTTLAPVIAI 373

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T  F  L G   N   +  ++  IG  V++ ++V + + + +     +I  ++ 
Sbjct: 374 PVSLIGTFAFMQLGGFSINTVTLFGLILAIGIVVDNAILVVENV-ERILNENQTIDAKEA 432

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
            ++++ E  G  V +++      +P+A+  G        F+I +   +V++A +++ ++ 
Sbjct: 433 TNRAMKEVTGPIVASTLVMLAVFIPVALLPGITGLMFAQFSITICIALVLSAINALTLSP 492

Query: 818 PILLFIYDWRAKNAR 832
            +   +     K A+
Sbjct: 493 ALCAMVMKRNPKPAK 507



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 50/453 (11%), Positives = 136/453 (30%), Gaps = 33/453 (7%)

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            A+L+   A        G     G    ++  +   +++          ++D   ++A   
Sbjct: 592  AVLNQDPAIEDFAGAIGFNALTGGVAANSATMFVNLKD-----WDERLAMDGDHTQAAVA 646

Query: 463  IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS------IVRAMMIFIIR 516
               +     I   +    G   + G  I   L  ++   +  +      +  AMM    +
Sbjct: 647  QRINMQLYGIDKSMSIAMGLPPIPGIGIGDALEFMVQDTSGRTAQELAQVTYAMMAAANQ 706

Query: 517  YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
              ++ +       R  +    + I   +AR  GV +S +    +  L  ++  ++ ++ +
Sbjct: 707  APEITN--AMTTYRANVPHYNVEIDREKARQLGVPLSAINDAMATHLASSYVNDFALNGR 764

Query: 577  GGIQ-LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                 +     +  DLS V        +G+    +        +        ++     L
Sbjct: 765  SYRVFVQAKGEQRNDLSDVLRIHVPSALGEQVPLSAVATIEPTLEPDLVTSYNMLPAARL 824

Query: 636  E-------------MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
            +                ++I E V                +       + ++++ + + +
Sbjct: 825  QLNPAPGYSSGEAIDAMERIAEEVLTQGYTYEWTNMAYQEKLAGNTAQIALVLALVFIYL 884

Query: 683  YIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++  +++ W      I         T       G   ++     ++ LI  +  + +++ 
Sbjct: 885  FLVAQYESWALPAAIIIVAPTAAVGTFAALLAGGQALSIYGQIGLILLISLAAKNAILMV 944

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVIGS--FA 798
            +     +K  T  +S  +   +           TS +  + +LP+    G   I      
Sbjct: 945  E--FSKLKRETQGLSIEEAAIQGGKMRFRAVNMTSWSFILGILPLVFANGAGAISQNTTG 1002

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +  G+++       +           R K  
Sbjct: 1003 LALLGGMLMVLVVGSMMTPGFYAIFQTLREKLK 1035


>gi|150017762|ref|YP_001310016.1| acriflavin resistance protein [Clostridium beijerinckii NCIMB 8052]
 gi|149904227|gb|ABR35060.1| acriflavin resistance protein [Clostridium beijerinckii NCIMB 8052]
          Length = 1030

 Score =  155 bits (390), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/681 (9%), Positives = 198/681 (29%), Gaps = 45/681 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   ++ ++  +   +G++        + +++  P A   +             +     
Sbjct: 9   KRPVFITVIMLVFAIVGMV-----CYERLVVNDMPEAENASV---------SVSITETGG 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++    +        ++ +  ++  + F   +  E  A +V   +  
Sbjct: 55  SPADIETNVTKPVEDAVGKISGVSHITSTVTEGSSRTNIQFDLDKDPEVAAQEVRDKVSS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    ++        SI+              +Q  +++     ++       
Sbjct: 115 IRG-LPSDIDTPIISKFDSSATSILSVAVYGLDDN----QQLSDVVDNIEKKLYTVSGIG 169

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++  + D ++L +    T  +S      N  +       +    S     
Sbjct: 170 SVNISGEDTREIHIKLDNNKLLKYGLATTDVSNAIKKDNVDQSTGKITDKDNEISVKISS 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                          +I                 +   +A      
Sbjct: 230 KIKK--------------------VDDFKNILIANKNGTEIRVKDIAEVEDGVADRSSYA 269

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     +        L++         +   +  +   +   
Sbjct: 270 YYDGKPAIGIDIVKQSGSNTVQLADDVKKTLTKLKSSLPKGVHVDIVSDDSVSIQSTIDS 329

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      L ++++F+ +   +  L++  ++ +++I T   + +   +L   ++  + 
Sbjct: 330 VLETMRDGCILAVVIVFLFLNEWESTLISATTLPISIITTFVCMKVKAFSLNTMTLMALS 389

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +GL +D  I+V E I       +S   +     S     +  +    +   + +    
Sbjct: 390 VAVGLLIDDAIVVIENIVRHLHMGKSPREAAREATSEIGFAVIATTSAVISVFLPVSMVS 449

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    F +T+  S+ +S+F + ++V  +   ++R K+ K  +I             
Sbjct: 450 GTIGRYFFQFGLTVVFSMAVSLFISFTLVPMLSSKMLRLKRNKKENILSKFFKGFNSKFD 509

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +    +R   + +     I  +  +   G    I   G   +    N  V +S    + 
Sbjct: 510 ILAHKYSRLLVMSLHHRLVIIIVAGVMFAGSLTLISSLGFTMMPSTDNNQVTVSANFDSG 569

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            +L       +  +     + +     G     ++    +K ++T+              
Sbjct: 570 ITLDNASEKAKQIES---IIKKYPEVSGMYTTVSKNSSSIKIELTDKNKRKENSRDFARK 626

Query: 659 PKISRELIRKGIVGVIISAIA 679
              + + I    V V  +++A
Sbjct: 627 LSGNLQNIPGAQVSVAAASMA 647



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 97/267 (36%), Gaps = 13/267 (4%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             N  I  K G ++ V     V+  V   +  +   G  +      +++    +Q     
Sbjct: 237 FKNILIANKNGTEIRVKDIAEVEDGVADRSSYAYYDGKPAIGIDIVKQSGSNTVQLADDV 296

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
               T++   + K +   +      + +     +   +    I+ V+I            
Sbjct: 297 KKTLTKLKSSLPKGVHVDIVSDDSVSIQSTIDSVLETMRDGCILAVVIVF-------LFL 349

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            +W   L + TTL + I  T     +     N   + A+   +G  ++D +VV + +   
Sbjct: 350 NEWESTLISATTLPISIITTFVCMKVKAFSLNTMTLMALSVAVGLLIDDAIVVIENI--- 406

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++      S R+   ++ +E     + T+ A     LP+++  G++   F       +V 
Sbjct: 407 VRHLHMGKSPREAAREATSEIGFAVIATTSAVISVFLPVSMVSGTIGRYF-FQFGLTVVF 465

Query: 808 AASSSIFIAAPILLFIYDW--RAKNAR 832
           + + S+FI+  ++  +     R K  +
Sbjct: 466 SMAVSLFISFTLVPMLSSKMLRLKRNK 492



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 74/171 (43%), Gaps = 17/171 (9%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLT 728
              + ++A+ + + +  +F+ +   +  + +L L I    LG F +   + +L ++  ++ 
Sbjct: 849  QAMAMAALFLYLVMAAQFESFVDPISILFSLPLAIIGAVLGLF-VCKTQLSLMSIIGIIM 907

Query: 729  LIGYSVNDKVVVYD----RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            L+G    + +++ D    R+ +        +   + I +S    L   V T++A    ++
Sbjct: 908  LMGLVAKNGILLIDAAKQRINE-------GMEREEAIKQSGLIRLRPIVMTTLAMIFGMI 960

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+A+    G  +    A  +  G+V +   ++F+   +     D + K  +
Sbjct: 961  PLAISKGMGSEMRAPMAEAVIGGLVTSTILTLFVVPIMYTVFDDLKRKFRK 1011


>gi|320641375|gb|EFX10830.1| multidrug efflux system subunit MdtC [Escherichia coli O157:H7 str.
           G5101]
          Length = 1025

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSLGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGMVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|308177523|ref|YP_003916929.1| protein-export membrane protein SecF [Arthrobacter arilaitensis
           Re117]
 gi|307744986|emb|CBT75958.1| protein-export membrane protein SecF [Arthrobacter arilaitensis
           Re117]
          Length = 322

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 74/293 (25%), Positives = 142/293 (48%), Gaps = 13/293 (4%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + R W +   IL  +  +  +   G N GIDF+GG +  V   +  D+S+    + S+  
Sbjct: 23  KHRLWFLIAGILVILSILVPVVKGGFNLGIDFRGGSEFTVSDVQNTDISIGEKTVTSVAS 82

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
           G  +           V+ +    D     + L +  +        S    +  +GP    
Sbjct: 83  GSEATVTNIAPGAMRVQTERLSDD-----QTLAIADQLAKNYGVTSDEVTSNFIGPTWGA 137

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           ++ R+ +VG+++  + + + +   F+ W  +L AI  LI  +  T G ++L G E   +A
Sbjct: 138 DVSRQALVGLVVFVVLVGLLMAAYFRTWKMSLAAIVGLIAVVVVTAGIYSLTGFEITPSA 197

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSMAAF 780
           +   LT++ YS+ D VVV+D++R+N K YT  T  +F  L++ ++N+TL RS+ TS+ A 
Sbjct: 198 IIGFLTILSYSLYDTVVVFDKVRENTKDYTQQTKRTFEQLVNLAVNQTLVRSINTSVVAV 257

Query: 781 ISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + V  +      + G   +   ++ +  GI+V+A S++F+ AP+  ++     
Sbjct: 258 LPVAAILFIGSYLLGAGTLKDLSLALFVGIIVSALSTLFVQAPMFHWLRHKDE 310


>gi|257487823|ref|ZP_05641864.1| multidrug RND efflux transporter, permease protein MdtB
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 977

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  + ++  L    L Y +  KG   + 
Sbjct: 515 DIYAGGLRWVLRHQPLTLLAALATLALTVLLYIVVPKGFFPVQ 557



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495


>gi|218549493|ref|YP_002383284.1| multidrug efflux system subunit MdtC [Escherichia fergusonii ATCC
           35469]
 gi|256022232|ref|ZP_05436097.1| multidrug efflux system subunit MdtC [Escherichia sp. 4_1_40B]
 gi|300917090|ref|ZP_07133781.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 115-1]
 gi|226700775|sp|B7LV40|MDTC_ESCF3 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|218357034|emb|CAQ89666.1| multidrug efflux system, subunit C [Escherichia fergusonii ATCC
           35469]
 gi|300415657|gb|EFJ98967.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 115-1]
 gi|309702400|emb|CBJ01722.1| multidrug resistance protein [Escherichia coli ETEC H10407]
          Length = 1025

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|218695698|ref|YP_002403365.1| multidrug efflux system subunit MdtC [Escherichia coli 55989]
 gi|293446431|ref|ZP_06662853.1| multidrug efflux system subunit MdtB [Escherichia coli B088]
 gi|254810279|sp|B7L9U9|MDTC_ECO55 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|218352430|emb|CAU98204.1| multidrug efflux system, subunit C [Escherichia coli 55989]
 gi|291323261|gb|EFE62689.1| multidrug efflux system subunit MdtB [Escherichia coli B088]
 gi|323948463|gb|EGB44444.1| AcrB/AcrD/AcrF family protein [Escherichia coli H120]
          Length = 1025

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|169794839|ref|YP_001712632.1| nodulation protein precursor [Acinetobacter baumannii AYE]
 gi|88758888|emb|CAJ77866.1| Putative RND family drug transporter [Acinetobacter baumannii AYE]
 gi|89145114|emb|CAJ77868.1| nodulation protein precursor [Acinetobacter baumannii AYE]
 gi|169147766|emb|CAM85629.1| nodulation protein precursor [Acinetobacter baumannii AYE]
          Length = 1032

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/629 (10%), Positives = 165/629 (26%), Gaps = 48/629 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +++   +  +GL         +  ++ FP+      +                 
Sbjct: 9   KYPVFTIMMMLSLMVLGLAS-----WKRMTVEEFPNIDFPFVV---------VTTQYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + +           +    +   F         A  V   +  
Sbjct: 55  SPEAVESDITKKLEDQINTISGIKQITSRSSEGLWMVIAEFNLDTSSAIAAQDVRDKIAP 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++   +    ++         I+      +       + S  + ++ + Q+       
Sbjct: 115 VIAQFRDEIDTPIVQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  +  P +L+       ++       N          +        Q 
Sbjct: 173 NVNLLGDAKRQIRIKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                           D+          F      +    A +    
Sbjct: 233 KV--------------------IHPLGFGDLVIANKNGSPIFLKQVATVEDTQAELQSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +    ++        L+A         V   +      S   
Sbjct: 273 FYNGRTAVSVDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + 
Sbjct: 333 VVRTIIEGAVLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  I+V E I       +    +   G       +  + +T +   + + F G
Sbjct: 393 LSIGLLIDDAIVVRENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+  ++LISMF + ++   +        K K   +     +       
Sbjct: 453 GLIGRFFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKKESRLQRFFNYISNLLDG 512

Query: 539 AIQFM--------RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                        R RF  V I  +   +                 KG I++        
Sbjct: 513 LTHIYEKLLKLALRFRFITVIIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDS 572

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            L   ++ L  +      F +       +
Sbjct: 573 SLEYTQAKLHQVDQIIRQFPDVVSTYGVV 601



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 8/218 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +             +  + ++K   ++      +        I   +       +  +
Sbjct: 282 VDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGA 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG  ++D
Sbjct: 342 VLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDD 401

Query: 737 KVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+  +T               E     + T++      LP+A  GG +  
Sbjct: 402 AIVV----RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGR 457

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F + ++  ++++   S  +   +     D   K 
Sbjct: 458 FFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKK 495



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 861  ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 920

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 921  MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 977

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 978  LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 1020


>gi|220912782|ref|YP_002488091.1| preprotein translocase subunit SecF [Arthrobacter chlorophenolicus
           A6]
 gi|219859660|gb|ACL40002.1| protein-export membrane protein SecF [Arthrobacter chlorophenolicus
           A6]
          Length = 338

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 134/296 (45%), Gaps = 13/296 (4%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            + W +   +  ++  I  +   G N GI+F+GG +  V   +  D +V    +  +  G
Sbjct: 24  KKIWFLIALVGVALSIIIPVAKGGFNLGIEFRGGSEFTVSNVKTTDATVGEKAVTDVVAG 83

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            +            ++      D +     L + +   T          +  VGP    +
Sbjct: 84  SVPRVANVAGTTMRIQT-----DKLTDDETLRIKEGLHTAYGVTENEVTSTFVGPTWGAD 138

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           + ++ ++G+++  +   + + + F+ W  ++ A+  +++ +  T G +AL   E   +A+
Sbjct: 139 VTKQALIGLVVFVLLAAVLMALYFRTWKMSVSALAGMLVTMFITAGVYALSDFEVTPSAI 198

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSMAAFI 781
              LT++ YS+ D VVV+D++R+N       T  +F + ++ ++N+TL RS+ T M A +
Sbjct: 199 IGFLTVLSYSLYDTVVVFDKIRENTAEIDSSTRRTFAEEVNLAVNQTLVRSINTMMVAIL 258

Query: 782 SVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V  +        G   +   ++ +  GI++  +++IF+AAP+  ++        +
Sbjct: 259 PVGAILFIGAGLLGAGTLRDLSLALFVGILIGTAATIFVAAPMYAWLRQNEPDLVK 314


>gi|215487299|ref|YP_002329730.1| multidrug efflux system subunit MdtC [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967311|ref|ZP_07781527.1| multidrug resistance protein mdtC [Escherichia coli 2362-75]
 gi|254810278|sp|B7UTB4|MDTC_ECO27 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|215265371|emb|CAS09767.1| multidrug efflux system, subunit C [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288119|gb|EFR16023.1| multidrug resistance protein mdtC [Escherichia coli 2362-75]
          Length = 1025

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|78183969|ref|YP_376404.1| hydrophobe/amphiphile efflux-1 HAE1 [Synechococcus sp. CC9902]
 gi|78168263|gb|ABB25360.1| Hydrophobe/amphiphile efflux-1 HAE1 [Synechococcus sp. CC9902]
          Length = 1152

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 72/525 (13%), Positives = 146/525 (27%), Gaps = 33/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I  +GL+       P   ++  P   P                     +
Sbjct: 10  RPVLSTVCSLLIVIVGLIAI-----PILPIENLPDIAPPTVK---------VQSTYVGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++K   I   S     + I++SF            V   +  
Sbjct: 56  AVAVEQGVTSVLEQQINGVEKMDYITSTSSSDGVSSISVSFDSGTDGNINQVNVQNRVSL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV---LSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
              +L  + +K+ +         ++       N DQ        S  + +   D +   +
Sbjct: 116 AEPQLPEEVRKSGVTVNKASNSILLVYNFVNENPDQAQYSVETISGYLDKNLTDNVKRVK 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                       I      DP +L     +   +       N        G     +   
Sbjct: 176 GVGDVTYFGNRKIAFRLWLDPDKLAANNLSAIDIVNQLKSQNRLVPAGKIGGSPAPEGQE 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + V+ +  ++                   + +     G     +             +
Sbjct: 236 FTFTVQLQGRLTTTQEFEN------------IVLRSTGDGGLVRLKDVGRVELGGETYGI 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D   +             +  +          +                          S
Sbjct: 284 DAMDINGTPSVGIAIYQLSGSNAIEVSNGVKDVLEEFEKTLPVGLGVQKIYDTTDFISQS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 +      LV+++LF+ +   K  LV   +I + +I T AL+   G +L   ++ 
Sbjct: 344 IKGVTNSLRDAVILVVLILFLFLQNWKATLVPAIAIPVALIGTFALVLAFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           G+VL  GL VD  I V E    +  +  +   +        +   I  S +   +   VL
Sbjct: 404 GLVLATGLVVDDAITVVEDTSAKKAEGMTSVQAAIETMDELFGAVIATSLVKMAVFLPVL 463

Query: 478 FFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           FF G  G   + FA T+  SI IS F A++    +   ++  +  
Sbjct: 464 FFPGATGTIYKQFAATILFSIGISTFNALTFSPMLSALLLSRETK 508



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T      FG   N   +  ++   G  V+D + V +       
Sbjct: 369 WKATLVPAIAIPVALIGTFALVLAFGFSLNQLTLFGLVLATGLVVDDAITVVE---DTSA 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
                ++      ++++E  G  + TS+      LP+  + G    I   FA  + F I 
Sbjct: 426 KKAEGMTSVQAAIETMDELFGAVIATSLVKMAVFLPVLFFPGATGTIYKQFAATILFSIG 485

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
           ++  +++  +  +   +     K
Sbjct: 486 ISTFNALTFSPMLSALLLSRETK 508



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 72/214 (33%), Gaps = 9/214 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R     G   A     + +          +              E+    +  VI +
Sbjct: 911  NLYRSIKVEGTPNAGNSSGQAIGAMKQIFNQGNFQGLGFDWTGISREEVKAGSLAVVIFA 970

Query: 677  A--IAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +A+ + +  +++ Y   +  + T+   +   L F    G   N+ A   ++ LIG +
Sbjct: 971  LGILAVFLVLSAQYESYSDPIIILLTVPTALLGALVFLGAAGQVLNIYAQVGLVMLIGLA 1030

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ D      +      S  +    S    L   + T++++    LP+ +    G
Sbjct: 1031 GGNAILIVD---LANQKMGEGESALEAAKFSAKSRLRPILMTAISSLTGFLPLMLASGAG 1087

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 S  + +  G++VA   S  +     + + 
Sbjct: 1088 AQSQSSLGLVVFGGLLVATFLSTLVVPVFYVVMK 1121


>gi|227504984|ref|ZP_03935033.1| preprotein translocase subunit SecD [Corynebacterium striatum ATCC
           6940]
 gi|227198434|gb|EEI78482.1| preprotein translocase subunit SecD [Corynebacterium striatum ATCC
           6940]
          Length = 623

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 109/581 (18%), Positives = 207/581 (35%), Gaps = 68/581 (11%)

Query: 2   RNNPW-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           RN  W    +      +  + AL            P         LG+DL+GG+ + L  
Sbjct: 4   RNRQWPKRAIALFALIVVAIYAL--IFLTGARQGTP--------KLGIDLQGGTRVTLVP 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR--FKENIADKVTLF 118
             ++     LQ   + L   +   G+    +    + + ++         + +     L 
Sbjct: 54  QGEEPTQDQLQQARNILEQRVNGMGVSGSEVVINGSTLVITVPGEDASQAQAVGQTSQLL 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV------ISHAIEQSMEIIRQRID 172
            + V  +   D  K            +     ++++       +  AI++++E   ++ D
Sbjct: 114 FRPVAQQPMPDMNKLNDTLLDMANRWVEYRVLSVEEANASLKQVHDAIKKAVEQSGEKKD 173

Query: 173 QIG------------ISESTIQRLGSHRILIQLPGE------QDPSRLRQLLGTTAKMSF 214
           +                E +     +                 DP+ +            
Sbjct: 174 KKSEDSQAPTVTAKPKKEPSNSLEKADFRDEMTAMLRKDRQSDDPTTISAA--AALLKCD 231

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVE-----------DKVEISGIHLNGA------ 257
               P                ++   YL+            +   ++G  ++        
Sbjct: 232 ADSDPLAGTDDPAKQFVACDFANKTPYLLAPAPLLEGVKDPNGTRLTGNEIDTNKPINGG 291

Query: 258 -TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSG 315
                                G+  + +VT+ N+ K +A+ LD  V++APVI  A     
Sbjct: 292 LNPQTGQMEISFAFKTGDGPNGSETWSKVTQQNLKKQVAITLDSAVISAPVIQGATPVGS 351

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTCAIV 369
              I+G+F+ E A  LA  L+ G+LP+               V   LG  ++  G  A +
Sbjct: 352 ATSITGDFSQEEATSLANNLKYGALPLSFTGSNGEPGGTVETVPPSLGKAALKAGLIAGI 411

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIG 425
            G +L+VL+ +  +     V+  ++  + ILT   L LL    G +L L  IAG+V+G+G
Sbjct: 412 VGFILVVLYSLYYFRALAGVSLITLVASGILTYGALVLLGRWIGYSLDLSGIAGLVIGVG 471

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
              DS ++  ERI++E  + ++   +    + R+ +TI   N   LI  V+++F   G V
Sbjct: 472 ATADSFVVYYERIKDELLEGRTFRSATTKAWERSRATIVTGNAVTLIGAVIVYFLAIGEV 531

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +GFA TMGL+    +  +  I+  +M  I          +N
Sbjct: 532 KGFAFTMGLTTAFDLVVSFLIMAPLMQLIGARPAAAKPSMN 572



 Score =  113 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 74/218 (33%), Gaps = 8/218 (3%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +     Q   +     +                    E V P + +  ++ G++ 
Sbjct: 350 GSATSITGDFSQEEATSLANNLKYGALPLSFTGSNGEPGGTVETVPPSLGKAALKAGLIA 409

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLT 728
            I+  I +++Y    F+    +  + TL+     T G   L G       +L+ +A ++ 
Sbjct: 410 GIVGFILVVLYSLYYFRALAGVS-LITLVASGILTYGALVLLGRWIGYSLDLSGIAGLVI 468

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G + +  VV Y+R++  +       +FR    K+   +    V  +    I  + +  
Sbjct: 469 GVGATADSFVVYYERIKDELLE---GRTFRSATTKAWERSRATIVTGNAVTLIGAVIVYF 525

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                +  FA  M          S  I AP++  I   
Sbjct: 526 LAIGEVKGFAFTMGLTTAFDLVVSFLIMAPLMQLIGAR 563


>gi|330811569|ref|YP_004356031.1| multidrug efflux system transmembrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379677|gb|AEA71027.1| Putative multidrug efflux system transmembrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1038

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 75/605 (12%), Positives = 169/605 (27%), Gaps = 38/605 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               V+L   +  +G++       P+  +   P A                +  L     
Sbjct: 15  PIATVLLTFALVLLGVIA-----FPRLPVAPLPEAEFPTIQ---------VNAQLPGASP 60

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + +   +    +   S +        S       + L F+  +  +  A +V   +    
Sbjct: 61  ETMASSVATPLEVQFSAIPGITQMTSSSALGSTNLILQFSLDKSIDTAAQEVQAAINTAA 120

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            KL  D              S VL   +I   +    E S  +      QI   +   Q 
Sbjct: 121 GKLPNDMPNLPTWRKVNPADSPVLI-LSISSSLMPGTELSDYVETLLSRQISQIDGVGQI 179

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             S +    +  +    RL  +  T A +                              +
Sbjct: 180 YISGQQRPAIRVQASADRLAAIGLTLADIRLAL--------------------QQASLNL 219

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                     ++  + N      +   ++                 +             
Sbjct: 220 AKGALYGASSISTLSTNDQLFQPEEYGELIVSYKDGAPVHLKDIAKVVNGSENAYVQAWS 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
            +      +   +   +   T++        L+A         V          S    +
Sbjct: 280 DSEPGVNLVIFRQPGANIVETVDRIQAALPTLQAMLPAAVQVKVLIDRTQTIRASLHEVE 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T  I   LV+ V+ + +      L+    + +++  + AL+ ++G +L   ++  IV+ 
Sbjct: 340 ITLLIAVLLVVAVMALFLRQLSATLIVSAVLGVSLTASFALMYVMGFSLNNLTLVAIVIS 399

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG-- 481
           +G  VD  I+V E I         +  +   G      T+   + + + A + L F G  
Sbjct: 400 VGFVVDDAIVVVENIHRHLEAGDGMREAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGV 459

Query: 482 -GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G   + FA+T   +ILIS+  ++++   +    +R     +          L      +
Sbjct: 460 VGRLFKEFALTATSTILISVVVSLTLAPTLAALFMRAPVHHAHSKMGFGERLLGWYEHGL 519

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           +   A    +      ++    + +          +    +   +    D+S      + 
Sbjct: 520 RRALAHQKLMIGVFGLTLALAVVGYVFIPKGFFPVQDTGLVLGTSEAAADVSFPDMVAKH 579

Query: 601 LQIGD 605
             + D
Sbjct: 580 KALAD 584



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 99/269 (36%), Gaps = 7/269 (2%)

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
           I  L T+   +  +  G + +      PV L  +   +   +   +   +       LV 
Sbjct: 230 ISTLSTNDQLFQPEEYGELIVSYKDGAPVHLKDIAKVVNGSENAYVQAWSDSEPGVNLVI 289

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +    + V     ++     +  ++P +      I   +  R  + +  + ++I+ + +
Sbjct: 290 FRQPGANIVETVDRIQAALPTLQAMLPAAVQVKVLIDRTQTIRASLHEVEITLLIAVLLV 349

Query: 681 LIYIWIRFKWYFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           +  + +  +   A   ++ ++ + +T +     + G   N   + A++  +G+ V+D +V
Sbjct: 350 VAVMALFLRQLSATLIVSAVLGVSLTASFALMYVMGFSLNNLTLVAIVISVGFVVDDAIV 409

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +    +        R+   K   E     V  S +   + +P+   GG V      
Sbjct: 410 VVENIH---RHLEAGDGMREAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKE 466

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           FA+     I+++   S+ +A  +      
Sbjct: 467 FALTATSTILISVVVSLTLAPTLAALFMR 495



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 83/203 (40%), Gaps = 6/203 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + ++ +   EI   + I        +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVRLLDQAKNEIGMPAAITGNFQGAAQAFQSSLASQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    L G +F++ A+  ++ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGLGALIMLWLLGQDFSIMALIGLVLLIGIVKKNGILMIDFALD--AQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +  ++ I ++        + T++AA +  LP+ +    G  +     I +  G++V+
Sbjct: 940  NKGMVPQEAIFQACLTRFRPIMMTTLAALLGALPLMLGYGPGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
             + ++F    I L++     + A
Sbjct: 1000 QALTLFTTPVIYLWLERLFHRPA 1022


>gi|330809642|ref|YP_004354104.1| multidrug efflux system transmembrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377750|gb|AEA69100.1| multidrug efflux system transmembrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1031

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 68/583 (11%), Positives = 159/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIILAGLIA-----YRLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F      +    +V   +   
Sbjct: 56  PDVMTSAVTAPLERQFGQMPGLTQMASTSSGGASVITLRFNLDINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPKDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKIAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       A +       N ++    F              
Sbjct: 175 VTIAGGQRQAVRIKVNPEALAANGLNLADVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN    + K   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLTSPKDYAELILAYANGAPLRLKDVAQIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +           V          S +  
Sbjct: 275 ANENQAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVTVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVMVTFLFLRRVSATIIPSVAVPLSLIGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENIARFIEEGDSPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  ++             D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEAEQGRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +    L  + ++  L    + Y    KG   + 
Sbjct: 515 AAYGRKLQWVLKHQPLTLLVAVGTLVLTVVLYLAVPKGFFPVQ 557



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 63/163 (38%), Gaps = 8/163 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +++      +    +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIVLVVMVTFLFLRRVSATIIPSVAVPLSLIGTFGVMYLAGFSINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      S      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---ARFIEEGDSPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           V+      FAI +A  I+++   S+ +   +   +     K A
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEA 497



 Score = 46.2 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +  +  I ++        + T++AA    +P+      G  +     + M  G+
Sbjct: 937  AERNRGVDPQTAIYQAALLRFRPILMTTLAALFGAIPLMFATGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+   ++F    I L+      + AR
Sbjct: 997  LVSQVLTLFTTPVIYLYFDRLGRRFAR 1023


>gi|320179496|gb|EFW54451.1| Multidrug transporter MdtC [Shigella boydii ATCC 9905]
          Length = 1025

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LI     + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLISIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|91211364|ref|YP_541350.1| multidrug efflux system subunit MdtC [Escherichia coli UTI89]
 gi|122423273|sp|Q1R9Z5|MDTC_ECOUT RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|91072938|gb|ABE07819.1| hypothetical protein YegO [Escherichia coli UTI89]
 gi|294491551|gb|ADE90307.1| multidrug resistance protein MdtC [Escherichia coli IHE3034]
 gi|307626378|gb|ADN70682.1| multidrug efflux system subunit MdtC [Escherichia coli UM146]
          Length = 1025

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALQLFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|319796322|ref|YP_004157962.1| acriflavin resistance protein [Variovorax paradoxus EPS]
 gi|315598785|gb|ADU39851.1| acriflavin resistance protein [Variovorax paradoxus EPS]
          Length = 1026

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 70/694 (10%), Positives = 196/694 (28%), Gaps = 48/694 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  +G        L    + ++P                         
Sbjct: 9   RRPVLALVVSTLILLLGA-----RALGDLPVRQYPLTESTTLT---------ITTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+     +  + ++       S    ++ I++    +        +    +  
Sbjct: 55  SPELMQGFVTQPIAQAVATIENVDYLSSSSTLGRSVISVRMKLNADANQALTQAMAQVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  +    +++ ++ +  ++     +   +   A   +  + R    Q        
Sbjct: 115 VKYRLPAEAFDPVILKSSGEATAVAYVGFSSKTMPVPA--LTDYLSRVVQPQFASIPGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S    + +    D +R+     +  +++      N           ++  +     
Sbjct: 173 GVEVSGGQTLAMRVWLDANRMAARGISAGELADALRQNNVQAAPGQVKGLYVVSNIRVNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +  E                      D+     G           +    A      
Sbjct: 233 DLVNVAEF--------------------RDMVIKREGDALVRLGDVATVELGAASADSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +    ++    L   ++    P     +          S   
Sbjct: 273 TMDGDKAIYLGLQAAPNGNPLVIVKRIRDLLPGIKQNMPPGVEVQLPFELARFIEASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  L+   +I L+++   AL+ L G ++ L ++  +V
Sbjct: 333 VQKTLLEAIAIVVLVIFLCLGSLRAVLIPVVTIPLSMLGAAALMLLFGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     + +S   +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVHRHIEEGKSRVQAALIGAREVAGPVIAMTLTLAAVYAPIGLMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLSRFFL 533
              G   + FA T+  ++++S   A+++   M  F++       +  +  +         
Sbjct: 453 GLTGSLFKEFAFTLAGAVVVSGVIALTLSPVMSSFLLPQDATGSRMARYAESFFHKLATA 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               + +        G+  +++          +       + +  +   + + +  ++  
Sbjct: 513 YGRLLDVSLHHRWVTGLFAAVVLVSLPFLYNASQRELAPGEDQAMVLTVIKSPQHANIDY 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V                   E      +    G S +   V     K           + 
Sbjct: 573 VEKF----GQKWDDVFAALPENTGRWLINGSDGVSNSIGGVQLSDWKDRKRNADQIQGEV 628

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +G      +    +  +  S   + + + IR
Sbjct: 629 QASMGDVEGSNIFAFQLPSLPGSTGGLPVQMVIR 662



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 87/250 (34%), Gaps = 8/250 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + +    +  V L  V +        D S      +  +L       G+ +   + +  
Sbjct: 242 DMVIKREGDALVRLGDVATVELGAASADSSATMDGDKAIYLGLQAAPNGNPLVIVKRIRD 301

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGA 696
           +   I + +P            +     I +    ++ +   +++ I++        L  
Sbjct: 302 LLPGIKQNMPPGVEVQLPFELARFIEASIDEVQKTLLEAIAIVVLVIFLCLGSLRAVLIP 361

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + T+ L +        LFG   NL  + A++  IG  V+D +VV + +    +      S
Sbjct: 362 VVTIPLSMLGAAALMLLFGFSINLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGKS 418

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                     E  G  +  ++       P+ + G   GS+   FA  +A  +VV+   ++
Sbjct: 419 RVQAALIGAREVAGPVIAMTLTLAAVYAPIGLMGGLTGSLFKEFAFTLAGAVVVSGVIAL 478

Query: 814 FIAAPILLFI 823
              +P++   
Sbjct: 479 -TLSPVMSSF 487



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 56/148 (37%), Gaps = 5/148 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            L+           L  + ++ + I   L   AL     N+     ++TLIG      +++
Sbjct: 860  LVLAAQYESLRDPLIILISVPMSICGALVPLALGFATINIYTQIGLVTLIGLISKHGILM 919

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
             +   +       ++  R  I+++    L   + T+ A  + ++P+      G +   S 
Sbjct: 920  VEFANE--IQARDNLERRPAIEQAARIRLRPILMTTAAMVVGLVPLLFASGAGANSRFSI 977

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + +  G++V    ++F+   +   +  
Sbjct: 978  GLVIVVGMLVGTLFTLFVLPTMYTLLAR 1005


>gi|260435885|ref|ZP_05789855.1| multidrug efflux transporter, Hydrophobe/Amphiphile Efflux-1
           [Synechococcus sp. WH 8109]
 gi|260413759|gb|EEX07055.1| multidrug efflux transporter, Hydrophobe/Amphiphile Efflux-1
           [Synechococcus sp. WH 8109]
          Length = 1038

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/644 (12%), Positives = 175/644 (27%), Gaps = 40/644 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+   +I   G             L+  P   P                    
Sbjct: 9   LRRPVLTVVCSLLILLAGCTALF-----GLGLEDLPPLAPTRV---------SVSASFPA 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++  + L+       + RQ    I+L F      E  A KV   + 
Sbjct: 55  ASPEVVEQSVTRVLEQQLNGLEGVESISSTSRQGGASISLRFNAG-DPELNAIKVQNEVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + +L     +  L      E  +++   +           +  + +   D +  +   
Sbjct: 114 LASRRLPQAVTRQGLRVRRSSEDLLMILGFSHPPDQYVHTFLAGWLDQTLRDALLSTPGI 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                     +      DP RL Q   T   +S      N        G   +       
Sbjct: 174 GDVRIFGSSELSFRLWLDPQRLVQTNLTPGDVSQALAEQNVLAAVGSIGAAPVPAGQVLS 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             VE +  +                    + +   + G     +              + 
Sbjct: 234 LPVEAEGRLRSQSDFEN------------LVLRRLDNGGLLRLKDVGRVALGQRNYGREA 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +              L A   P   + +          +  
Sbjct: 282 MNLAGERSVAVGIYQRDGANALEVSRAIKRKLKHLEASFPPGIEHSMIVDVADTVQANLD 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LVL+VL + +   +  L+   ++ + ++ +L+L+ L G+ L    + G+
Sbjct: 342 RTFITLRDAVLLVLVVLVLFLGRWRLALIPGLAVPVALVGSLSLVKLSGSNLNSLILFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATVVLFF 479
           VL  G+ VD  I+V+E I     +      + +   +  A + +  S + A +   VL  
Sbjct: 402 VLATGIVVDDAIVVSEDIAGRIERGTPPEQAAEDAMAELATAVVATSLVLAAVFLPVLLI 461

Query: 480 FG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----------KKMKSIDINP 527
            G  G   +  A+ +  +IL S   A+S        ++            K  + +    
Sbjct: 462 PGSIGRLYQPIALAISGAILFSTLNALSFTPMACARVLGPGGGRLPGAIGKLSRWLRQGM 521

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +        +     R +   + +     I +  L          D +G I+       
Sbjct: 522 QTLQSQYAKQLEHWLQRKQRIALLLLSGLVITASGLAVMPTAFIPDDDQGQIRGYFTLPD 581

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
              L    + +++++              +      Q G+    
Sbjct: 582 GASLERSVAVMDNIRRVVSEEPLVRTGNFYAGSSFGQSGEDRGS 625



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 670  IVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  V+ +    ++Y+    +   +   L  + T+ + +   L    L G+  ++     +
Sbjct: 874  VTWVLFALGVTVVYLLLAALYESFIDPLIILLTVPMALLGALIGLKLRGLPLDVYGQMGL 933

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            L L+  +  + +++ +      +     ++  D +  +    +   + T++ +    LP+
Sbjct: 934  LVLVSLAAKNGILIVEFAN---QRMAAGLALHDAVVDAAVNRMRPILLTAVTSLAGFLPL 990

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  G +   S    +  G++VA+  S+F    + L +   R   A
Sbjct: 991  LFAQGMGAASRVSIGTVVFSGLLVASLLSLFAVPAVYLVLKRARRPTA 1038



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
              +W  AL     + + +  +L    L G   N   +  ++   G  V+D +VV + + 
Sbjct: 361 FLGRWRLALIPGLAVPVALVGSLSLVKLSGSNLNSLILFGLVLATGIVVDDAIVVSEDI- 419

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
                           + ++ E     V TS+      LP+ +  GS+       A+ ++
Sbjct: 420 --AGRIERGTPPEQAAEDAMAELATAVVATSLVLAAVFLPVLLIPGSIGRLYQPIALAIS 477

Query: 803 FGIVVAASSSIFIAA 817
             I+ +  +++    
Sbjct: 478 GAILFSTLNALSFTP 492


>gi|126175372|ref|YP_001051521.1| acriflavin resistance protein [Shewanella baltica OS155]
 gi|125998577|gb|ABN62652.1| acriflavin resistance protein [Shewanella baltica OS155]
          Length = 1047

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 56/537 (10%), Positives = 153/537 (28%), Gaps = 38/537 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGIVS-----FSKLSIREMPDVESPVVT---------ISTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SAAIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D K  ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPEDAKDPVVSKDNGSGEPSVYVNLSSS--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   ++      N    G                
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDITNALRKENIETPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 217 ---GQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNISLGIIAQSDANPLLVAKEVHQEVDRVQDFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++LG ++ L ++  ++
Sbjct: 334 VYSTLYVTGALVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANMLGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           G        F++ + +S+L S   A+++   +   +++     +     + R F   
Sbjct: 454 GMVGLLFTEFSVMLAVSVLFSSLVALTLTPVLSSKLLKANVKPNRFNRWVDRGFARM 510



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 88/284 (30%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L            V + V +++  +        + +V    +  + R        +
Sbjct: 279 VNISLGIIAQSDANPLLVAKEVHQEVDRVQDFLPEGTSLVVDFDSTVFIDRSINEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        + G   NL  + A++  IG
Sbjct: 339 YVTGALVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAANMLGYSINLLTLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVLFSSLVALTLTPVLSSKLLKANVKPNR 498



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/138 (12%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        L     N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLLLTSQGINIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L          I  + +  L   + T+    +  +P+      G     +    + FG+
Sbjct: 931  QLRDRGFELDKAIIDASSRRLRPILMTAFTTLVGAVPLIFSTGAGSESRIAVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFI 823
              A   ++ +   +   I
Sbjct: 991  AFATFVTLLVIPAMYRLI 1008


>gi|186682789|ref|YP_001865985.1| acriflavin resistance protein [Nostoc punctiforme PCC 73102]
 gi|186465241|gb|ACC81042.1| acriflavin resistance protein [Nostoc punctiforme PCC 73102]
          Length = 1060

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/516 (11%), Positives = 142/516 (27%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L+ ++  +G    L   +  +     P+                  +     
Sbjct: 11  KKPVPTIVLFLILTVVGWFSFLSLGIDTNPNIDVPTVS--------------IKVTQPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L      + ++    +K T++F      +   + V   +  
Sbjct: 57  GPAELESQVTKKIEDAVAGLGNIDFMISTVSDGNSKTTINFVLGTDSDRATNDVRNAIAQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +    ++      +  ++      D       E S  + +     +       
Sbjct: 117 IRQDLPQEINDPIVERLDFADGPVITYAVKSD--KRSVEELSNIVDQTISRALLGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++     PSRL+ L  T  +++      N +  G    V     S     
Sbjct: 175 QIQRVGGVDREIRINLSPSRLQSLGITATQVNDQIRDLNINLPGGRAEVGGSEQSIRTLG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +    +                               +   I      V    
Sbjct: 235 SAASVDILKTYEILLPQ--------------------GGSVPLSSLGTIEDKFGDVRQAA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +                 +        L           +          S   
Sbjct: 275 TLNNQPVVAFQVLRSTGSVLVTVEQGVKAAVKELEKTLPADVKLDLIFTRADVVRQSYQS 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   + L +IV+ + +   +  L+   ++ L++I T A+   LG TL   ++  + 
Sbjct: 335 TIDELIQASVLAVIVILVFLRDWRATLITAVALPLSIIPTFAVQQALGYTLNNMTLLALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  ++  E +       +S + +           +  S+ T +   + + F G
Sbjct: 395 LAVGNLVDDAVVEIENMERHIAMGKSAWDAAFESADEVGLAVIASSATIIAVFMPVAFMG 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   + F +T+ +S + S   A  +   M  ++
Sbjct: 455 GIPGQFFQPFGVTVAVSTIFSTLVARMVTPMMGAYL 490



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 66/193 (34%), Gaps = 9/193 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                  ++ ++K +   V L  I     V  +  +  I + I   +++ I +L+     
Sbjct: 298 EQGVKAAVKELEKTLPADVKLDLIFTRADVVRQSYQSTIDELIQASVLAVIVILV---FL 354

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     L L I  T       G   N   + A+   +G  V+D VV  + M   
Sbjct: 355 RDWRATLITAVALPLSIIPTFAVQQALGYTLNNMTLLALALAVGNLVDDAVVEIENM--- 411

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +      S  D   +S +E     + +S       +P+A  G   G     F + +A  
Sbjct: 412 ERHIAMGKSAWDAAFESADEVGLAVIASSATIIAVFMPVAFMGGIPGQFFQPFGVTVAVS 471

Query: 805 IVVAASSSIFIAA 817
            + +   +  +  
Sbjct: 472 TIFSTLVARMVTP 484



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 72/199 (36%), Gaps = 7/199 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWY 691
              +E + K          +        KI +E+  +    + ++ + +  I + +   + 
Sbjct: 848  EAVETINKLPVMQNLPPGVVQQPSGSAKIMQEIFGRFGGALGLALMCIYAILVLLYNNFL 907

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  +  L   +   L    +      + A+  ++ L+G    + +++ D     +   
Sbjct: 908  HPLSIMAALPFCLGGALVALMVAQKPLGIYALIGIVLLLGIVTKNSILLVD---YTIINI 964

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
                + R  + ++    L   + TS+A    +LP+A+    G  V     I +  G   +
Sbjct: 965  QEGKTQRQALVEAGVSRLRPILMTSLATIAGILPLALGIGAGSEVRQPMGIAIMGGFTTS 1024

Query: 809  ASSSIFIAAPILLFIYDWR 827
               ++ +   I  +I +++
Sbjct: 1025 TLLTLVVVPVIFSYIDNFQ 1043


>gi|281179174|dbj|BAI55504.1| putative transport protein [Escherichia coli SE15]
          Length = 1025

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRMRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|261340518|ref|ZP_05968376.1| multidrug RND efflux transporter, permease protein MdtB
           [Enterobacter cancerogenus ATCC 35316]
 gi|288317613|gb|EFC56551.1| multidrug RND efflux transporter, permease protein MdtB
           [Enterobacter cancerogenus ATCC 35316]
          Length = 1040

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 66/652 (10%), Positives = 171/652 (26%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLSLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAMPMTQVEDMVETRVAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +       N +                    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAITSANVNSAKGSLDGPT---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V +S      +   +          +                 + +       G  
Sbjct: 234 --RAVTLSANDQMQSADEYRQ--------LIVAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKQQAIVMNVQRQPGANIIETADSIRAMLPQLIESLPKSVSVKVLSDRTTNIRASVTDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSVESLRKQNRFSRASERMFERIIA 523

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    +L+          +    +      P  +S  
Sbjct: 524 AYGHVLAKVLNHPWATLGVALGTLALSVMLWIFIPKGFFPIQDNGIIQGTLQAPQTVSFA 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ +I  ++   E             S+   R+   +K       
Sbjct: 584 NMAQRQQQVSEIIMKDPAVESLTAYVGVDGTNPSLNSARLQINLKPLDDRDD 635



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 38.5 bits (87), Expect = 4.8,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 93/261 (35%), Gaps = 6/261 (2%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
             N G          V         V  S + S++           ++     + +   D 
Sbjct: 766  HNTGNTPGLAALDTVRLTSKDGGIVPLSAIASVEERHTPLTINHLDQFPSTTISFNVPDG 825

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +    +E ++     +   + IQ          +  +   I  ++ + +AM I + + +
Sbjct: 826  YSLGEAVEAIQNAEKNLGFPTDIQTQFQGSTLAFQAALGSTIWLIVAAVVAMYIVLGVLY 885

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + +   +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D     
Sbjct: 886  ESFIHPITILSTLPTAGVGALLALMLAGSELDVIAIIGIILLIGIVKKNAIMMID--FAL 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                   +S RD I ++        + T++AA +  LP+ +    G  +     I M  G
Sbjct: 944  AAEREQGMSPRDAIFQACLLRFRPILMTTLAALLGALPLMLSTGVGAELRRPLGIGMVGG 1003

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++V+   ++F    I L    
Sbjct: 1004 LLVSQVLTLFTTPVIYLLFDR 1024


>gi|37526665|ref|NP_930009.1| multidrug efflux system subunit MdtB [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|60390065|sp|Q7N3E2|MDTB_PHOLL RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|36786097|emb|CAE15149.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 1048

 Score =  154 bits (389), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 69/652 (10%), Positives = 169/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +  + I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMAAILLAGII-----GYRMLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQLGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     + +        +L    +        +    +  +   +I        
Sbjct: 125 SNLLPNDLPYPPIYSKVNPADPPILM-LAVTSDAMPMTQIQDMVETRIAQKISQVNGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +      +  +       N +                    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAAQGLDSETIRTAINNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+     ++                 I +       G  
Sbjct: 236 ------------VTLSANDQMKSVNDYRNLIIAYKNGSPVRLQDVATIEQGAENTKLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    +   L +         +          S    
Sbjct: 284 SNNTQAIVINVQRQPGANVIETTDNIRQMLPELISSLPKSVDMKILTDRTTTIRASVKDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +  G   L+   ++ L++I T A++   G ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYLFLRNGIATLIPSIAVPLSLIGTFAVMYFCGFSVNNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     + +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEQGEKPMTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
             G   R FAIT+ ++ILIS   ++++   M   I++ +     +    +        I 
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARILKPESQIKHNRFEQASGRFFEQMIA 523

Query: 539 ----AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                ++      W      L ++    LL+          +    +      P  +S  
Sbjct: 524 GYAVWLKRALNHPWITFGIALSTLALTALLYLMIPKGFFPSQDNGLIQGTLEAPQSISFT 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +  Q+  +  Q+   E             ++   R+   +K       
Sbjct: 584 AMVNKQQQVSSLLLQDPAVENITTFVGVDGSNPTLNNGRLQITLKPLNQRDD 635



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 87/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            N  I +K G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSVNDYRNLIIAYKNGSPVRLQDVATIEQGAENTKLGAWSNNTQAIVI 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +     ++           ++  + K +   +              +  EL+    
Sbjct: 293 NVQRQPGANVIETTDNIRQMLPELISSLPKSVDMKILTDRTTTIRASVKDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 349 --LAIALVVMVIYLFLRNGI-ATLIPSIAVPLSLIGTFAVMYFCGFSVNNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEQGEKPMTAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492



 Score = 38.1 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 76/210 (36%), Gaps = 6/210 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
               +   +  +  + +  V+     I     I              +   +  +  + IA
Sbjct: 817  TFSFNVAEDASLEQAVNAVRDAAQLINMPKDISTQFQGTTLAFESALGNTLWLIAAAIIA 876

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            M I + I ++ +   +  ++TL       L    + G E ++ A+  ++ LIG    + +
Sbjct: 877  MYIVLGILYESFIHPVTILSTLPTAGVGALLALMMAGHELDVIAIIGIILLIGIVKKNAI 936

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D            +S  + I ++        + T+MAA +  LP+ +    G  +  
Sbjct: 937  MMID--FALAAEREQGLSPYEAIYQACLLRFRPILMTTMAALLGALPLMLSTGVGAELRR 994

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               I M  G++++   ++F    I L    
Sbjct: 995  PLGICMVGGLIMSQILTLFTTPVIYLLFDR 1024


>gi|218676681|ref|YP_002395500.1| Cation/multidrug efflux pump [Vibrio splendidus LGP32]
 gi|218324949|emb|CAV26774.1| Cation/multidrug efflux pump [Vibrio splendidus LGP32]
          Length = 1039

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/588 (11%), Positives = 169/588 (28%), Gaps = 41/588 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
              +  ++   +  IGL+           +  +PS  P               +V  +  
Sbjct: 9   RPKFAFVISIFLTLIGLIAI-----KTMPISEYPSVTPPQ-----------VRVVAFMPG 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFL 119
              + V   +    +E  + +                 + ++F +S   +     V+  +
Sbjct: 53  ASAETVKEVIGNPIEEEVNGVDGMVYMQSRSTNDGRYFLNITFDNSVDADMAMVNVSNRV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               + L  + +   +         ++      +      +E +  +    +++I     
Sbjct: 113 AVAENMLPFEVRARGVRIRKAAPDDLLAIAFYSEDQSMSELELNSWVEANFMERIARISG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +    D  R+  L  TT  +       N        G    R++   
Sbjct: 173 LASSDLIGA-TYGMRVWLDMDRMASLGVTTFDVKNAIREQNAVVPAGRIGQGPSRENAAL 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q+ +  +  +S                +    I        + +     N+         
Sbjct: 232 QFNLITQGRLSSAE-------------EFEQIIVKTLADGNQIYLKDVSNVEIGSQFYDA 278

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                               +   T      +   + +         +      +   S 
Sbjct: 279 YATYNGGDAALVAMQANPDANALETGAAVKSVLEDIESIMPAGMTYAIPYDTTLSVEASI 338

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T  +  GLV+ V ++ +   +  L    +I +++I T A + L G ++   ++ G
Sbjct: 339 RSIVETLIVAVGLVIAVTYLFLGNVRTTLAPVIAIPVSLIGTFAFMQLGGFSINTVTLFG 398

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVV- 476
           ++L IG+ VD+ ILV E +     +NQ      + +         I  S +  L   +  
Sbjct: 399 LILAIGIVVDNAILVVENVERILNENQAIDAKEATNRAMKEVTGPIVASTLVMLAVFIPV 458

Query: 477 --LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G     F+IT+ +++++S   A+++  A+   +++              F  +
Sbjct: 459 ALLPGITGLMFAQFSITICIALVLSAINALTLSPALCAMVMKRNPK---PAKWFVAFNAM 515

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            D +   + +A    V  S +  +     +              +   
Sbjct: 516 FDKVTDAYGKAVSLLVRKSAVLLVSFAVAITVMVTMNDKLPTAFVPAE 563



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 96/255 (37%), Gaps = 5/255 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +     + L  V +     Q  D       G+   +        +++     ++ V + 
Sbjct: 254 TLADGNQIYLKDVSNVEIGSQFYDAYATYNGGDAALVAMQANPDANALETGAAVKSVLED 313

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
           I  I+P                  IR  +  +I++   ++   ++        L  +  +
Sbjct: 314 IESIMPAGMTYAIPYDTTLSVEASIRSIVETLIVAVGLVIAVTYLFLGNVRTTLAPVIAI 373

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T  F  L G   N   +  ++  IG  V++ ++V + + + +     +I  ++ 
Sbjct: 374 PVSLIGTFAFMQLGGFSINTVTLFGLILAIGIVVDNAILVVENV-ERILNENQAIDAKEA 432

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
            ++++ E  G  V +++      +P+A+  G        F+I +   +V++A +++ ++ 
Sbjct: 433 TNRAMKEVTGPIVASTLVMLAVFIPVALLPGITGLMFAQFSITICIALVLSAINALTLSP 492

Query: 818 PILLFIYDWRAKNAR 832
            +   +     K A+
Sbjct: 493 ALCAMVMKRNPKPAK 507



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 50/453 (11%), Positives = 136/453 (30%), Gaps = 33/453 (7%)

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            A+L+   A        G     G    ++  +   +++          ++D   ++A   
Sbjct: 592  AVLNQDPAIEDFAGAIGFNALTGGVAANSATMFVNLKD-----WDERLAMDGDHTQAAVA 646

Query: 463  IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS------IVRAMMIFIIR 516
               +     I   +    G   + G  I   L  ++   +  +      +  AMM    +
Sbjct: 647  QRINMQLYGIDKSMSIAMGLPPIPGIGIGDALEFMVQDTSGRTAQELAQVTYAMMAAANQ 706

Query: 517  YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
              ++ +       R  +    + I   +AR  GV +S +    +  L  ++  ++ ++ +
Sbjct: 707  APEITN--AMTTYRANVPHYNVEIDREKARQLGVPLSAINDAMATHLASSYVNDFALNGR 764

Query: 577  GGIQ-LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                 +     +  DLS V        +G+    +        +        ++     L
Sbjct: 765  SYRVFVQAKGEQRNDLSDVLRIHVPSALGEQVPLSAVATIEPTLEPDLVTSYNMLPAARL 824

Query: 636  E-------------MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
            +                ++I E V                +       + ++++ + + +
Sbjct: 825  QLNPAPGYSSGEAIDAMERIAEEVLTQGYTYEWTNMAYQEKLAGNTAQIALVLALVFIYL 884

Query: 683  YIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++  +++ W      I         T       G   ++     ++ LI  +  + +++ 
Sbjct: 885  FLVAQYESWALPAAIIIVAPTAAVGTFAALLAGGQALSIYGQIGLILLISLAAKNAILMV 944

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVIGS--FA 798
            +     +K  T  +S  +   +           TS +  + +LP+    G   I      
Sbjct: 945  E--FSKLKRETQGLSIEEAAIQGGKMRFRAVNMTSWSFILGILPLVFANGAGAISQNTTG 1002

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +  G+++       +           R K  
Sbjct: 1003 LALLGGMLMVLVVGSMMTPGFYAIFQTLREKLK 1035


>gi|209547610|ref|YP_002279528.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209538854|gb|ACI58788.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 1050

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/517 (13%), Positives = 155/517 (29%), Gaps = 40/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ M+   GLL        Q  +  FP       I+            L+  
Sbjct: 9   RNPVPAILLFVMLTAGGLLA-----FTQLPIQNFPDMDLPT-IN--------VTATLDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L        ++      + +SF   +  E   ++V   +  
Sbjct: 55  APTQLETEVARTIEDSLAALSYLDHITTTVTDGTVSVKVSFKLEKDSETALNEVRNAVDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    +   +   T +  ++V        +     E S  +       +       
Sbjct: 115 VKGDLPAQMESPSVTKVTVQSSALVTYAVGSTALNE--TELSWFVDNDLTKALLSVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      I  ++  + DP+ +  L  T A +S           G +  +   R +     
Sbjct: 173 QVNRIGGIDREVHVDLDPTTMASLGVTAATVSSQLKAVQTDTSGGLGEIGGTRQTLRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     + G                    +       ++       +I    A      
Sbjct: 233 ALPSVEALKG--------------------LKIPLANGQQVRLDDVASITDSFAERSSMA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           S +         A    A              +G  +G+   
Sbjct: 273 YLDGKPVIAVEIKRSNGFSDSGVAADV-DKAIKEFAAKHSNVEIDEAYSTIGPIIGNYDG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+++ +   +  +++  ++ L+VI T  ++   G +L + ++  + 
Sbjct: 332 SMHMLYEGAILAIIVVWLFLRDWRATILSAVALPLSVIPTFLVMYFAGFSLNIVTLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    +  +    +     +     +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIARHLKMGKRPIDAALEAANEIGLAVIATTFTLVSVFLPTAFMS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFII 515
           G      R F IT  +++L S+  A  +   M  + +
Sbjct: 452 GIPGLIFRQFGITAAVAVLASLVVARLLTPMMAAYFM 488



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 77/258 (29%), Gaps = 15/258 (5%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V  +    ++   +   S+   D         K             V +       K  
Sbjct: 252 QVRLDDVASITDSFAERSSMAYLDGKPVIAVEIKRSNGFSDSGVAADVDKAIKEFAAKHS 311

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             EI    +     I     S  ++ +G      + +A+++       W   + +   L 
Sbjct: 312 NVEIDEAYSTIGPIIGNYDGSMHMLYEG------AILAIIVVWLFLRDWRATILSAVALP 365

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +  T       G   N+  + A+  ++G  V+D +V  + +    +         D  
Sbjct: 366 LSVIPTFLVMYFAGFSLNIVTLLALSLVVGILVDDAIVEIENI---ARHLKMGKRPIDAA 422

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
            ++ NE     + T+       LP A   G        F I  A  ++ +   +  +   
Sbjct: 423 LEAANEIGLAVIATTFTLVSVFLPTAFMSGIPGLIFRQFGITAAVAVLASLVVARLLTPM 482

Query: 819 ILLFIYD---WRAKNARI 833
           +  +         K+ RI
Sbjct: 483 MAAYFMKAHLTEEKDGRI 500



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 72/179 (40%), Gaps = 8/179 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
            + S EL +   + + I    +   + + F  +   L  +  L L +   L    + G  F
Sbjct: 837  QRSSELFQSFGLAMAIGVFCIYAVMVLLFHDFLQPLTLLMALPLSLGGALVPLVVTGTSF 896

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++  V  +L L+G    + +++   +   +      +S  D +  + ++     V T++A
Sbjct: 897  SMPVVIGLLMLMGVVTKNSILL---IEYAIMSRQRGMSRFDALVDACHKRARPIVMTTIA 953

Query: 779  AFISVL--PMAVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                +L   +++ GG        AI +  G+V++   S+ +   I  F+ D      R+
Sbjct: 954  MASGMLPAALSLMGGDSSFRQPMAIVVIGGVVMSTLLSLIVIPVIFTFVDDLEQILKRV 1012


>gi|157964237|ref|YP_001499061.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rickettsia
           massiliae MTU5]
 gi|157844013|gb|ABV84514.1| Hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rickettsia
           massiliae MTU5]
          Length = 1019

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 77/621 (12%), Positives = 175/621 (28%), Gaps = 45/621 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  +G +     F  +  +   P       I++     G   L +E  
Sbjct: 20  KRPVFATVLNLVIVALGAI-----FFTKLQIRGTPDISVP-IINVKAHYAGADALYME-- 71

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                   +    ++    ++            ++ ITLSF  S   E   + V   +  
Sbjct: 72  ------QEITTRIEKALKTVENLDYITSQSSTGESSITLSFLLSTDIEVALNDVRAKISD 125

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +      D K   +          +      DQ     +E +  +       +   ES  
Sbjct: 126 ITYMFPQDMKAPSVAKLDADSFPSLFISVESDQYSD--LELTKIVEDNLQTPLDKLESVG 183

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  E D  +L Q   +  ++       N          +        + 
Sbjct: 184 QSQIYGGREYIMRIEPDSKKLYQHKISLLELESAIKAQNKDYPAGTIKTKSNNFIVTLEG 243

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                      +I                 I           
Sbjct: 244 SLSTPEEFG--------------------NIILKVQNGGIIKLRDIATISLTSPDEDIIF 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +              ++          +          S   
Sbjct: 284 RYNGKSSIALGLIKESKANVIDLSHEVTKALERIKESMPKGISMGIAYDGATPVKASIYA 343

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V ++ +   K  L+   +I +++I T +++   G ++ + ++  ++
Sbjct: 344 VFQTIFEALILVILVTYLFLASAKISLIPFVTIPVSLIGTFSVMYAFGFSINIFTLLAMI 403

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I   N        +  +        I    IT     + + F  
Sbjct: 404 LAIGLVVDDAIVMLENIFRYNEMGHKPMEAAMLASKEIGFAIIAMTITLAAVFLPVGFIE 463

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK------SIDINPLSRFF 532
           G   +    FA T+   +L S F A+++   M   ++              +        
Sbjct: 464 GFIGKLFIEFAWTLAFCVLFSGFVALTLTPMMSSRMVTKHNTDLPQFLVKFNDILQFIQN 523

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                + + F   + + + I+  F +  I   FT  +    +  G +Q+ +       L+
Sbjct: 524 KYIYYLKLTFDNKKKFVIIIASSFIVLIISFKFTQKIFVPQEDDGFLQVSLKGPEGSSLA 583

Query: 593 VVRSNLESLQIGDISFQNFDG 613
                ++  +    ++++  G
Sbjct: 584 SSTKVVKEAEKILANYKDILG 604



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 85/245 (34%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I L V     + L  + +   +    DI F+        L  ++    + +  +  + 
Sbjct: 252 GNIILKVQNGGIIKLRDIATISLTSPDEDIIFRYNGKSSIALGLIKESKANVIDLSHEVT 311

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              ++I E +P          G    +  I      +  + I +++           +L 
Sbjct: 312 KALERIKESMPKGISMGIAYDGATPVKASIYAVFQTIFEALILVILVTYLFLASAKISLI 371

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T      FG   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 372 PFVTIPVSLIGTFSVMYAFGFSINIFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGH 428

Query: 756 SFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +    T  A F+ V  +  + G +   FA  +AF ++ +   +
Sbjct: 429 KPMEAAMLASKEIGFAIIAMTITLAAVFLPVGFIEGFIGKLFIEFAWTLAFCVLFSGFVA 488

Query: 813 IFIAA 817
           + +  
Sbjct: 489 LTLTP 493



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 90/271 (33%), Gaps = 11/271 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              + L F       I     I +    N  + L  + +  E + +   S  N        
Sbjct: 755  YDVILQFNQKDRKDISDFSKILIRAKNNNMLPLESIANITEKISVKSYSHYNNSKSVTIS 814

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              L        A   + ++  K +     +           +         ++  + + I
Sbjct: 815  SDLAPDGKIDDAINEINKIAAKLLDPSNTIIEYIGEIKQMREADS----NMLITFVFALI 870

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  +  +   IT  +    L G   N+ +   ++TLIG    + 
Sbjct: 871  FIYLVLAAQFESFTDPLLILLAVPFSITGGVLALWLAGNSLNMYSNIGLITLIGLITKNS 930

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ +      +L    +  ++ I +S    L   + T++AA +  LP+      G +  
Sbjct: 931  IMIVEFAN---QLREKGVKVQEAIIESSKLRLRPILMTTLAAVVGALPLVFADGAGAAAR 987

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             S    +  G+ +    +IF+   I      
Sbjct: 988  NSIGFVIVGGLSIGTIFTIFVIPVIYQTFKK 1018


>gi|117624272|ref|YP_853185.1| multidrug efflux system subunit MdtC [Escherichia coli APEC O1]
 gi|218558956|ref|YP_002391869.1| multidrug efflux system subunit MdtC [Escherichia coli S88]
 gi|237704533|ref|ZP_04535014.1| multidrug resistance protein mdtC [Escherichia sp. 3_2_53FAA]
 gi|166233226|sp|A1ACT1|MDTC_ECOK1 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|226700687|sp|B7ME88|MDTC_ECO45 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|115513396|gb|ABJ01471.1| conserved hypothetical protein [Escherichia coli APEC O1]
 gi|218365725|emb|CAR03461.1| multidrug efflux system, subunit C [Escherichia coli S88]
 gi|226900899|gb|EEH87158.1| multidrug resistance protein mdtC [Escherichia sp. 3_2_53FAA]
 gi|323951830|gb|EGB47704.1| AcrB/AcrD/AcrF family protein [Escherichia coli H252]
 gi|323956112|gb|EGB51864.1| AcrB/AcrD/AcrF family protein [Escherichia coli H263]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALQLFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++     +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVYFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|325109900|ref|YP_004270968.1| acriflavin resistance protein [Planctomyces brasiliensis DSM 5305]
 gi|324970168|gb|ADY60946.1| acriflavin resistance protein [Planctomyces brasiliensis DSM 5305]
          Length = 1071

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/543 (13%), Positives = 156/543 (28%), Gaps = 41/543 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++  +G +      L +  +D  P                    V E   
Sbjct: 24  RPVTTLMVAGIVVMLGWIS-----LQRLAIDLMPDMSFPTL---------SIVTVYEGAG 69

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   L    ++  S +           +  + + + F      +   +++   L  +
Sbjct: 70  PEEVETLLTRPIEQAVSSVAGVDEIRSESMEGSSTVRVQFVWGTNLDEAVNEIRQQLDRI 129

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D     +      +  I+L            +E +    R  + Q+   +    
Sbjct: 130 RKGLPDDIDPPYVRKFDTADAPILLMGLQST---LSGVELTSLAERVILPQLEQVDGVAS 186

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R + ++  E D  ++        ++       N  +                   
Sbjct: 187 VRLRGREVREIQIELDRGQMETRGIGVNEIFAALQSANVMQPAGDLQ------------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G          + ++   + +      G           +   +    +   
Sbjct: 234 -------RGDTRILVRNRGEFRSLDEIRETVIRNQGGAFVRIADVATVIDGIKDKTELTR 286

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +A  +     +        +       +L I +         + S  
Sbjct: 287 VNGQPALMVYVFKQAGANTVAVSDEVQQQVRQINRDVQDARLVIRQ-DRADFIREAISNI 345

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K   A+   L  IVL + +   +  L+   ++  +VI T  L+   G TL + S  G+ L
Sbjct: 346 KYAAALGMLLATIVLVIFLRNFRSTLIIGVAMPFSVIATFVLIYFQGFTLNIVSFGGLAL 405

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
           GIGL VD++I+V E I     +  S   +   G       I  S +T LI  + L F   
Sbjct: 406 GIGLLVDNSIVVLESIFRYREQGYSPRDAAIQGTQEVAGAIVASTLTTLIVFLPLIFVEG 465

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G  +   A  +  S+  S+  +++I   M+   ++            S   +  +   
Sbjct: 466 MTGVLLHQLAWVVSFSLFCSLLASLTITPVMVAHWLKTNPTDIQTAGTRSPISVFHEFNR 525

Query: 540 IQF 542
             F
Sbjct: 526 RWF 528



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 80/221 (36%), Gaps = 5/221 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                               V   + + + +I        T     +  +E       G +
Sbjct: 825  NQRRTLAATADISERELGEVAIELSEALRQIQLPRGYTLTVGGAWEDQQESFATLQQGFL 884

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ I M + +  +F+     L  + T+ L     +  FA      N+ +   ++ L G  
Sbjct: 885  VALILMYMVMASQFESLRDPLLILITIPLAGIGVMAVFAFTETTLNVQSFIGLIVLAGIV 944

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +VV D +   ++        +DL++ +        V T++   +++ P+AV    G
Sbjct: 945  VNNAIVVIDYVN-QLRRENPDWKMQDLVEAASVRRFRPIVMTTLTTILAMAPVAVGWGDG 1003

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G +    A  +  G+V    +++F    + + +     + +
Sbjct: 1004 GELQAPMARVVIGGLVSGTMTTLFAIPLLYVTVGQLTQRTS 1044



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 85/251 (33%), Gaps = 6/251 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              +       V ++ V + ++ ++      +        +   +    ++VA +  ++ 
Sbjct: 255 ETVIRNQGGAFVRIADVATVIDGIKDKTELTRVNGQPALMVYVFKQAGANTVAVSDEVQQ 314

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             ++I   V  + +   +     I   +        +   +A ++ +     +   L   
Sbjct: 315 QVRQINRDVQDARLVIRQDRADFIREAISNIKYAAALGMLLATIVLVIFLRNFRSTLIIG 374

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +   +  T       G   N+ +   +   IG  V++ +VV + +    +      S 
Sbjct: 375 VAMPFSVIATFVLIYFQGFTLNIVSFGGLALGIGLLVDNSIVVLESI---FRYREQGYSP 431

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF 814
           RD   +   E  G  V +++   I  LP+       G ++   A  ++F +  +  +S+ 
Sbjct: 432 RDAAIQGTQEVAGAIVASTLTTLIVFLPLIFVEGMTGVLLHQLAWVVSFSLFCSLLASLT 491

Query: 815 IAAPILLFIYD 825
           I   ++     
Sbjct: 492 ITPVMVAHWLK 502


>gi|258690874|gb|ACV88181.1| PcoC [Pseudomonas corrugata]
          Length = 1027

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 68/568 (11%), Positives = 155/568 (27%), Gaps = 38/568 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +  +  FP       +             LE    + +   +    ++  + L+      
Sbjct: 31  KLAIQDFPDMDLPVVV---------ISASLEGAAPEQLETEVARKIEDKLTSLRLLKHVT 81

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             +      I++SF   +      ++V   +     +L        +   T     ++  
Sbjct: 82  TVITDGAVSISVSFDIDKDGNEALNEVRNAVDSAMPQLPASLDTPSVSRLTTSASPLLTY 141

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
               D +   A   S  +  +   Q+              +  ++    DP+ +  L   
Sbjct: 142 VIASDALDEEA--LSWFVDNELSKQLLSVPGVALISRIGGVDREVQVNLDPALMAGLGIR 199

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
            A ++           G    +   + +      ++D   +                   
Sbjct: 200 VADVAAQLRAMQKDNSGGQGNLGSGQQAVRTLGAIDDPAVLG------------------ 241

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
              I       R        +I    A            +     +     S        
Sbjct: 242 --TIDIPSGDGRLLALSQLADIRDTHAERSSRAFRDGKPVIGFQITRSLGFSDIGVANDV 299

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                        ++++      V A L +             L ++V++  +   +  L
Sbjct: 300 RKRMTEFVQQHPNVRIDEAS-DTVKAVLANYHDSMNLLYEGMLLAVLVVWWFLRDWRATL 358

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   ++ L++I T  ++ L G TL   S+  + L IG+ VD  I+  E I    R  ++ 
Sbjct: 359 IVATALPLSIIPTFGVMYLAGFTLNAVSLLALALVIGVLVDDAIVEIENIARHLRMGKTP 418

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAIS 505
             +           +  +  T +   +   F G   G   R F +T  +++L S+  A  
Sbjct: 419 LQAATEAADEIGLAVLATTATLVAVFLPTAFMGGVAGKLFRQFGVTASVALLFSLLVARV 478

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           +   M  + ++    K+   +           I     R +   V  S+ F      +  
Sbjct: 479 LTPMMAAYFLKA---KTDTAHDGPLMTRYLGWIHASLSRRKTTMVLASLFFIGALALVPL 535

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV 593
                      G  ++ +       L  
Sbjct: 536 LPTSFLPAQDVGRSRITLELPPGTTLEQ 563



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 55/152 (36%), Gaps = 6/152 (3%)

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+L+  W    W   L   T L L I  T G   L G   N  ++ A+  +IG  V+D
Sbjct: 341 LLAVLVVWWFLRDWRATLIVATALPLSIIPTFGVMYLAGFTLNAVSLLALALVIGVLVDD 400

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +V  + +    +      +      ++ +E     + T+       LP A  GG     
Sbjct: 401 AIVEIENI---ARHLRMGKTPLQAATEAADEIGLAVLATTATLVAVFLPTAFMGGVAGKL 457

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              F +  +  ++ +   +  +   +  +   
Sbjct: 458 FRQFGVTASVALLFSLLVARVLTPMMAAYFLK 489



 Score = 45.5 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 59/179 (32%), Gaps = 3/179 (1%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                       +      V+    +          ++  E    ++  EL     + + 
Sbjct: 791 DRLRNITLSIELNGRNLGEVMAEASQLPAMRNLPPEVKRVEQGELQLMTELFGSFSLAMA 850

Query: 675 ISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I    +  + + +   +      ++ L L +   L    +    F+L +V  +L L+G  
Sbjct: 851 IGVFCIYSVLVLLFHDFLQPATILSALPLSLGGALVALLVCNFSFSLPSVIGLLMLMGIV 910

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             + +++ +     M      +   D +  + ++     + T++A    +LP A+  G 
Sbjct: 911 TKNSILLVE--YAIMARRDYGLGRYDALVDACHKRARPILMTTIAMGAGMLPTALGMGE 967


>gi|300781062|ref|ZP_07090916.1| protein-export membrane protein SecD [Corynebacterium genitalium
           ATCC 33030]
 gi|300532769|gb|EFK53830.1| protein-export membrane protein SecD [Corynebacterium genitalium
           ATCC 33030]
          Length = 721

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 122/616 (19%), Positives = 218/616 (35%), Gaps = 83/616 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +       L      +    AL  F                   LG+DL+GG+ + L   
Sbjct: 41  KRAWPARALALFALIVVATYALVFFTGDRTASP----------KLGIDLQGGTRVTLVPQ 90

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE--NIADKVTLFL 119
            +      L      L + +   G+   S+    N + ++ A     E  NI     L  
Sbjct: 91  GEQPTQEQLDQARTILENRVNGMGVSDASVVVDGNTLVITVAGEDTSEVRNIGQTSQLLF 150

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS-- 177
           + V  +  +  ++       E     V  +    +     ++Q  + + Q+I+ +  +  
Sbjct: 151 RPVGQQSPMIDQEAFPDVFGEMANRWVEYRVLTPEEAETTVKQFADGMNQQIEAMKRAQE 210

Query: 178 ---------------------------------ESTIQRLGSHRILIQLPGEQDPSRLRQ 204
                                            E++  R  +  +L +     DP++L+ 
Sbjct: 211 EQGEEVPEGMELPEPIEAPEITAQPKPEPDNTLEASDFRQETTEMLREDRQSDDPTKLQA 270

Query: 205 LLGTTAKMS-------FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED-----------K 246
                  +             P          +     S G   L+E             
Sbjct: 271 ATILMQALCTPKGEDGTVPADPLAGTDDPTKPLVACDSSGGQPMLLEAVPLLQGVEDPEG 330

Query: 247 VEISGIHLNGAT-------ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             ++G  ++                          +  G+  + E+T   +G+ +A+ LD
Sbjct: 331 PRLTGSEIDTNRPITGGFNPQTGQMEINFAFKQDGEFNGSSTWAELTGAMVGQQVAITLD 390

Query: 300 GRVLTAPVINQA-IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER------NV 352
            +V++AP I           I+G FT E A  LA  LR G+LP+               V
Sbjct: 391 SQVISAPQIQSPTPVGSATSITGQFTEEEAETLANNLRYGALPLSFAGENGEPGGTAMTV 450

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL---- 408
              LG  S+  G  A + GL+L+  ++   Y  +G+++ F++F    L    L LL    
Sbjct: 451 PPSLGVASLNAGIIAGLVGLLLVAAYVFYYYRLFGVISLFTLFAAGALVYGALVLLGRWI 510

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           G TL L  +AG+V+GIG   DS +++ ERI++E R+ +++  +   G+ RA  TI   NI
Sbjct: 511 GYTLDLSGVAGLVIGIGTTADSFVVLYERIKDEVRRGRTLRSATLNGWDRAKDTIVTGNI 570

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
             LI  VV++    G V+GFA TMGL+ +  +     +   +MI   R        +N +
Sbjct: 571 VTLIGAVVIYILAVGEVKGFAFTMGLTTIFDLLVTFLVTAPLMILASRNPFWAKPSVNGM 630

Query: 529 SRFFLIPDCIAIQFMR 544
            + F           +
Sbjct: 631 GKAFEAAKSKNANPRK 646



 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 31/270 (11%), Positives = 80/270 (29%), Gaps = 8/270 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  +       G          +          +  + + +    I      G   
Sbjct: 350 PQTGQMEINFAFKQDGEFNGSSTWAELTGAMVGQQVAITLDSQVISAPQIQSPTPVGSAT 409

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +     +         +                      V P +    +  GI+  ++ 
Sbjct: 410 SITGQFTEEEAETLANNLRYGALPLSFAGENGEPGGTAMTVPPSLGVASLNAGIIAGLVG 469

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGY 732
            + +  Y++  ++  F + ++ TL        G   L G       +L+ VA ++  IG 
Sbjct: 470 LLLVAAYVFYYYRL-FGVISLFTLFAAGALVYGALVLLGRWIGYTLDLSGVAGLVIGIGT 528

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           + +  VV+Y+R++  ++      + R       +      V  ++   I  + + +    
Sbjct: 529 TADSFVVLYERIKDEVR---RGRTLRSATLNGWDRAKDTIVTGNIVTLIGAVVIYILAVG 585

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  FA  M    +     +  + AP+++ 
Sbjct: 586 EVKGFAFTMGLTTIFDLLVTFLVTAPLMIL 615


>gi|320172683|gb|EFW47918.1| Multidrug transporter MdtC [Shigella dysenteriae CDC 74-1112]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQATINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|158333883|ref|YP_001515055.1| protein-export membrane protein SecD [Acaryochloris marina
           MBIC11017]
 gi|158304124|gb|ABW25741.1| protein-export membrane protein SecD [Acaryochloris marina
           MBIC11017]
          Length = 475

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 134/486 (27%), Positives = 219/486 (45%), Gaps = 59/486 (12%)

Query: 43  RISLGLDLRGGSHLVLEV----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-K 97
           +I+LGLDLRGGS L L+V    +  D     ++     + + L  EG+    ++ + + +
Sbjct: 34  KINLGLDLRGGSQLTLQVNPTEEVKDITPNVMEAVQTVVANRLNPEGVSEIVVQTVGSQQ 93

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I +        ++    ++   Q    + N      + V ++E +  +           +
Sbjct: 94  ILVQLPGVSDPKDAEQLLSQVAQLDFRRPNNAILAQVNVRSSELQRLLQKLPEAEKAGDA 153

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            A+ +    ++Q+  Q+   +                             T   ++    
Sbjct: 154 AALAKLQGEVQQKQKQLTELQDQFFVKTD--------------------LTGEDLNDAG- 192

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
              +  +   + V    D DG +        ++G               +  V   F   
Sbjct: 193 YAISQSQPNKWDVTLRFDVDGGKKFAALTKSLAGTGQPLGIFLDGKSISQATVSDRFKAN 252

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
           G                                 I  G A I+GNF +E A +LA  L+ 
Sbjct: 253 G---------------------------------ITGGAAIITGNFELEDAKLLANQLKG 279

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           GSLP+ + + E R VGA LG DSI +   A + GL+L+++FM V Y   GL+AD ++ + 
Sbjct: 280 GSLPVPVKVEEIRTVGATLGQDSIRQSVYAGIGGLILVLIFMGVWYRLPGLIADVALCVY 339

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
            +LT A   L G TLTLP IAG +L IG+AVD+NIL+ ER REE R  ++++ S++ GF 
Sbjct: 340 GLLTFACYVLFGVTLTLPGIAGFILSIGMAVDANILIFERTREELRSGKTLYRSIESGFY 399

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           RA+++I DSN+T LIA  VL++ G G VRGFA+T+G+ + +SMFTAI+  R +M   I  
Sbjct: 400 RAFTSILDSNVTTLIACGVLYWLGSGLVRGFAVTLGIGVAVSMFTAITCSRTLMFTAISL 459

Query: 518 KKMKSI 523
             ++ I
Sbjct: 460 PNLRKI 465



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 33/206 (16%), Positives = 85/206 (41%), Gaps = 4/206 (1%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                      G+   +   L   + K   +     ++    VG  + ++ IR+ +   I
Sbjct: 252 NGITGGAAIITGNFELEDAKLLANQLKGGSLPVPVKVEEIRTVGATLGQDSIRQSVYAGI 311

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              I +LI++ + ++    L A   L +    T   + LFG+   L  +A  +  IG +V
Sbjct: 312 GGLILVLIFMGVWYRLP-GLIADVALCVYGLLTFACYVLFGVTLTLPGIAGFILSIGMAV 370

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  +++++R R+ ++   +  +    I+          + +++   I+   +   G  ++
Sbjct: 371 DANILIFERTREELR---SGKTLYRSIESGFYRAFTSILDSNVTTLIACGVLYWLGSGLV 427

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPIL 820
             FA+ +  G+ V+  ++I  +  ++
Sbjct: 428 RGFAVTLGIGVAVSMFTAITCSRTLM 453


>gi|74312600|ref|YP_311019.1| multidrug efflux system subunit MdtC [Shigella sonnei Ss046]
 gi|123616826|sp|Q3Z0C8|MDTC_SHISS RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|73856077|gb|AAZ88784.1| conserved hypothetical protein [Shigella sonnei Ss046]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRH 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|332088371|gb|EGI93489.1| multidrug resistance protein mdtC [Shigella boydii 5216-82]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R NL+ 
Sbjct: 575 MRGNLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|260174321|ref|ZP_05760733.1| putative multidrug resistance/siderophore transport related,
           membrane protein [Bacteroides sp. D2]
 gi|315922589|ref|ZP_07918829.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696464|gb|EFS33299.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1047

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 62/522 (11%), Positives = 153/522 (29%), Gaps = 36/522 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +   IGL+      L Q  +++FP   P                      
Sbjct: 9   RPILAGVISVVFLIIGLI-----GLSQLPVEQFPEIAPPTV---------SVSATYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   + +  +E  + ++       S     + +IT+ F      +     V   +  
Sbjct: 55  AETVQKSVVVPLEEALNGVENMMYMTSSSTNNGSARITIYFRQGTDPDMATVNVQNRIAT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  ++ +     +  +I                 +  +      ++       
Sbjct: 115 AQGLLPAEVTRSGITVRKRQTSNIKALALYSPDNTFDESFLNNYLKINIEPRLSRIAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP+++ +     + ++      N        G            
Sbjct: 175 EVNVMGA-DYSLRIWLDPAKMAKYGLVPSDITTVLDEQNLEAPTGTLGAESKNTFQYVLK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                 +       +   + G           I    +      
Sbjct: 234 YRGR----------------YEEEKDYGNLVIRSQAGGEVLRLKDVARIELGASSYTYIG 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +     +  + +  +  + N  I+    + A +  G       +    +      S   
Sbjct: 278 EVNGHPGSNCMIAQTSGSNANEIIKEIDKVTAEIAQGLPKGMELVDLMSSKEFLDASIKN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   +   +   SI ++++ T A L   G +L + ++  +V
Sbjct: 338 VIKTLIEAILLVVLVVYVFLQSLRSTFIPAISIIVSLVGTFAFLYAAGFSLNMLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++ +  +   S + +         S +  +    +   + + F 
Sbjct: 398 LVIGTVVDDAIVVVEAVQAKFDEGYKSAYRATIDAMGGITSALVTTTFVFMAVFIPVCFM 457

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           G   G     F +TM +++ IS+  A+++  A+   I+    
Sbjct: 458 GGTTGTFYTQFGLTMAVAVAISLINALTLSPALCALIMTPHM 499



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/405 (9%), Positives = 115/405 (28%), Gaps = 21/405 (5%)

Query: 442  NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
              +       ++   +  Y    D +   ++A       G G   GF I +      S+ 
Sbjct: 634  WDERTEKEDGINAVINEIYRRTDDISSAQIMAFAQPMIPGYGVSSGFEIYIQDQKGGSVE 693

Query: 502  TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
              +   R M+  +    ++     +  +++      +     +         +      I
Sbjct: 694  DLLKYTRQMIDALNARPEIGRASTSFDTKYPQYLVEVDAALCKRNGVSPSDVLSTLSGYI 753

Query: 562  CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
               +   +N        + +       +D   + +       G++S  +       +   
Sbjct: 754  GGNYASNMNR-FSKLYRVMVQASPEFRLDTEALNNMFVRNSDGEMSPVSQYLTLTRVYGA 812

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG--------- 672
            +     ++     +               +          +      G +          
Sbjct: 813  ESLTRFNLFSAISVNGAPADGYSSGQAIQVVREVAEQVLPAGYGFEFGGMSREESSTGNT 872

Query: 673  --VIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              ++     + IY+    +    +  +  I ++   +  +  F  +FG+E N+     ++
Sbjct: 873  TTLVFIICVVFIYLILCALYESLFIPIAVILSVPFGLAGSFLFAKMFGLENNIYLQTGLI 932

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG      +++ +   +  +     ++       +    L   + TS+     +LPM 
Sbjct: 933  MLIGLLSKTAILLTEYASERRRQ---GMTIIQAAVSAAQVRLRPILMTSLTMIFGMLPMM 989

Query: 788  VWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G          +    G+++   + +FI   + +     + K
Sbjct: 990  FASGVGANGNISIGVGTVGGMLIGTVALLFIVPVLFMVFQYLQEK 1034



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                     ++I+ +  T  F    G   N+  + A++ +IG  V+D +VV + ++   
Sbjct: 359 SLRSTFIPAISIIVSLVGTFAFLYAAGFSLNMLTLFALVLVIGTVVDDAIVVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       ++       V T+       +P+   GG+       F + MA  +
Sbjct: 419 DEGYK--SAYRATIDAMGGITSALVTTTFVFMAVFIPVCFMGGTTGTFYTQFGLTMAVAV 476

Query: 806 VVAASSSIFIAAPI 819
            ++  +++ ++  +
Sbjct: 477 AISLINALTLSPAL 490


>gi|115377592|ref|ZP_01464789.1| acriflavin resistance protein [Stigmatella aurantiaca DW4/3-1]
 gi|310820424|ref|YP_003952782.1| acriflavin resistance family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|115365393|gb|EAU64431.1| acriflavin resistance protein [Stigmatella aurantiaca DW4/3-1]
 gi|309393496|gb|ADO70955.1| Acriflavin resistance family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1033

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/527 (11%), Positives = 145/527 (27%), Gaps = 33/527 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
              Q  +   P       +            +L     + +   +    +     +    
Sbjct: 28  GYNQLPVSALPQVDYPTIV---------VSTLLPGASAETMASAVTTPLERQFGQIPALS 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
                     ++ITL F  +R  +     V   +   ++ L          + +    + 
Sbjct: 79  QMTSVSSLGTSQITLQFELTRDIDAAEQDVQAAINATSNLLPATLPAPPTYSKSNPADTP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL+   I        + S +       +I           +      +  + DP+ L   
Sbjct: 139 VLT-LAITSDSLPLDQVSDQADSILAQKISQVSGVGLVTINGGQKPAVRVQIDPAALAGA 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T   +    V  N ++           D     Y ++   ++S               
Sbjct: 198 NLTLEDVRTALVAANVNQPKGNL------DGPRLDYALQTDDQLSAAASFEP-------- 243

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                 +                +    +                     +   +     
Sbjct: 244 ------LVLAYANGAPIRLRDVGSAIDGVENAQLAGWAGEKRAIILNVQRQPGANIIQVA 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +    L   L           +          S    + T  +   LV+ V F+ +   +
Sbjct: 298 DRVKALLPQLTPTLAQGLTISILSDRTETVRASVEDVQFTLVLTVLLVIAVNFVFLRSVR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             ++   ++ L+++ T  ++ L G +L   S+  + +  G  VD  I++ E I       
Sbjct: 358 ATIIPGIAVPLSLVGTFGVMYLTGYSLNNLSLMALTIATGFVVDDAIVMIENISRFIEAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
            + F +   G  +   TI    ++ +   + L F G   G   R FA+T+ ++I +S   
Sbjct: 418 DTPFNAALKGAKQIGFTIVSLTVSLVAVLIPLLFMGGLIGRLFREFAVTLAIAIGVSALL 477

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           ++++   M   +++ +  +       +        I +      +  
Sbjct: 478 SLTLTAMMSAHLLKGRDSRPQARFHQASERFFDGMIRVYRKGLDWVF 524



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 83/244 (34%), Gaps = 10/244 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R    ++   + +       +   + L  Q        +V + VK  + ++ P      
Sbjct: 256 LRDVGSAIDGVENAQLAGWAGEKRAIILNVQRQPGANIIQVADRVKALLPQLTPTLAQGL 315

Query: 654 TEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           T  +    +  +           V+   + + +           +     + L +  T G
Sbjct: 316 TISILSDRTETVRASVEDVQFTLVLTVLLVIAVNFVFLRSVRATIIPGIAVPLSLVGTFG 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G   N  ++ A+    G+ V+D +V+ + +    +      +  +   K   +  
Sbjct: 376 VMYLTGYSLNNLSLMALTIATGFVVDDAIVMIENI---SRFIEAGDTPFNAALKGAKQIG 432

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              V  +++    ++P+   GG +      FA+ +A  I V+A  S+ + A +   +   
Sbjct: 433 FTIVSLTVSLVAVLIPLLFMGGLIGRLFREFAVTLAIAIGVSALLSLTLTAMMSAHLLKG 492

Query: 827 RAKN 830
           R   
Sbjct: 493 RDSR 496


>gi|255010229|ref|ZP_05282355.1| AcrB/AcrD family RND transport protein [Bacteroides fragilis
           3_1_12]
 gi|313148023|ref|ZP_07810216.1| AcrB/AcrD family multidrug resistance protein [Bacteroides fragilis
           3_1_12]
 gi|313136790|gb|EFR54150.1| AcrB/AcrD family multidrug resistance protein [Bacteroides fragilis
           3_1_12]
          Length = 1067

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/603 (12%), Positives = 165/603 (27%), Gaps = 47/603 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G+L  +        + ++P   P                  +   
Sbjct: 9   RPVLSTVISIVIVILGILGLI-----SLPISQYPDIAPPTV---------SVSTTYQGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTLF 118
                  L      L   +   E +   S       + +I + F      +  A  V   
Sbjct: 55  A---QTVLNSVVAPLEEQINGVENMMYMSSTATNTGEARIDVYFKQGTDPDMAAVNVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +      L  +  K  ++T+  +   +++                       + ++    
Sbjct: 112 VAKAQGLLPAEVTKVGVITSKRQTSMLLVFSLYSSDDKYDNEFLENYAKINLVPEVQRVP 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                +        +     P  + Q       +S      N       FG      +  
Sbjct: 172 GVGDAMVLGA-DYSMRIWLKPDIMAQYHLMPTDVSAALAEQNIEAAPGAFGE---EGNQT 227

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            QY +  K  +                 +    +       +        ++        
Sbjct: 228 FQYTLRYKGRL-------------QSQEEFENIVIRATEDGQVLRLKDIASVELGRLTYG 274

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +        I    A  +    I     L     +   P     V +        S
Sbjct: 275 FTNKVNGHPAVTIIVFQTAGSNATAIINDILALLDKSASTFPPGVKVNVSQNANDFLFAS 334

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++ 
Sbjct: 335 IHEVVKTLIEAFILVFIVVYIFLQDLRSTLIPAIAIPVALIGTFFVLYLIGFSINLLTLC 394

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            +VL I + VD  I+V E +  +  +   S   +     +    A  +I    ++  I  
Sbjct: 395 AMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARLASIDAMNELGGAIVSITLVMMSVFIPV 454

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
             +    G   R F +TM ++I +S   A+++  A+   +        K+  ++     +
Sbjct: 455 SFMSGTSGTFYRQFGLTMAIAIALSALNALTLSPALCAILLKPHDPNKKEKVTLAKRFHA 514

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F    D I  ++ +   + +    L     +           I   G +          
Sbjct: 515 SFNAAYDTILKKYKKRVLFFIQKPWLTISAVVAGFALMIFLMNITPTGLVPNEDTGTIMA 574

Query: 590 DLS 592
            + 
Sbjct: 575 VVD 577



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 45/404 (11%), Positives = 114/404 (28%), Gaps = 35/404 (8%)

Query: 458  RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
            +A   I D+ +      ++    G     GF + +      S+     + +  +  +   
Sbjct: 652  KAREVIKDARVLLFAPPMI---PGYSVSNGFEMNLQDKTGGSLDKFYEVAQDFISKLQAR 708

Query: 518  KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
             +++S   +    F      I     +         +         L++   N       
Sbjct: 709  PEIQSAQTSFNPNFPQYMIDIDAAACKKAGLSPNDILTTLQGYYGGLYSSNFNR-FGKMY 767

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----------NFLVRLQYQPG 626
             + +    N   +L  ++S              F   K           N    +     
Sbjct: 768  RVMIQAEPNSRTNLESLKSIKIRNGNEMAPITQFMNIKRIYGPDNIKRFNMFTAMTINGS 827

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             +   +    +   +      L T    E  G     +        +I     + +Y+ +
Sbjct: 828  PADGYSSGQAIQAMQEVAEQTLPTGYGYEFSGMTREEQSSSGSSTAMIFVLCFVFVYLLL 887

Query: 687  ---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV-----------AAVLTLIGY 732
                  +   L  + ++   +  +  F  L G+  N+  +            A++ LIG 
Sbjct: 888  SAQYESYILPLAVLLSIPFGLAGSFIFAHLMGLANNIIPILGAATNNIYMQIALIMLIGL 947

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ +     +      +S            L   + TS+A  + ++P+ +    
Sbjct: 948  LAKNAILIVEFA---LDRRKMGMSITWAAVLGAGARLRPILMTSLAMVVGLIPLMLAMGV 1004

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G +   +       G+ +     IF+   + +     + K   I
Sbjct: 1005 GANGNRALGTAAVGGMFIGMICQIFVVPALFVLFQYLQEKVKPI 1048



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/416 (11%), Positives = 119/416 (28%), Gaps = 22/416 (5%)

Query: 437 RIREENRKNQSVFCSLDMGFSRAYST-------------IFDSNITALIATVVLFFFGGG 483
           RI    ++      +     +R                 I     T+++    L+     
Sbjct: 90  RIDVYFKQGTDPDMAAVNVQNRVAKAQGLLPAEVTKVGVITSKRQTSMLLVFSLYSSDDK 149

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
               F        L+     +  V   M+    Y     +  + ++++ L+P  ++    
Sbjct: 150 YDNEFLENYAKINLVPEVQRVPGVGDAMVLGADYSMRIWLKPDIMAQYHLMPTDVSAALA 209

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
                    +                      +    + + A     +  ++        
Sbjct: 210 EQNIEAAPGAFGEEGNQTFQYTLRYKGRLQSQEEFENIVIRATEDGQVLRLKDIASVELG 269

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                       +  V +          T ++  +   + +            V    + 
Sbjct: 270 RLTYGFTNKVNGHPAVTIIVFQTAGSNATAIINDILALLDKSASTFPPGVKVNVSQNAND 329

Query: 664 ELIRKG---IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFN 719
            L       +  +I + I + I ++I        L     + + +  T     L G   N
Sbjct: 330 FLFASIHEVVKTLIEAFILVFIVVYIFLQDLRSTLIPAIAIPVALIGTFFVLYLIGFSIN 389

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  + A++  I   V+D +VV + +   +     S     +   ++NE  G  V  ++  
Sbjct: 390 LLTLCAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARLASI--DAMNELGGAIVSITLVM 447

Query: 780 FISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               +P++   G+       F + MA  I ++A +++ ++  +   +      N +
Sbjct: 448 MSVFIPVSFMSGTSGTFYRQFGLTMAIAIALSALNALTLSPALCAILLKPHDPNKK 503


>gi|170680004|ref|YP_001743063.1| multidrug efflux system subunit MdtC [Escherichia coli SMS-3-5]
 gi|226700694|sp|B1LNW5|MDTC_ECOSM RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|170517722|gb|ACB15900.1| multidrug resistance protein MdtC [Escherichia coli SMS-3-5]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 169/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K   +      R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGVLEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|326382130|ref|ZP_08203822.1| preprotein translocase subunit SecD [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326198860|gb|EGD56042.1| preprotein translocase subunit SecD [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 544

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 125/524 (23%), Positives = 211/524 (40%), Gaps = 52/524 (9%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FV 66
           L      +G++ AL            P         LG+DL+GG+ +VL    DD     
Sbjct: 23  LTVFFVVLGIIYAL--VFFTGGGSPTP--------KLGIDLQGGTRVVLTARTDDGRAPS 72

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQGVNS 124
              L      +   +   G+G   +    N I ++    D +    +     L+++ V  
Sbjct: 73  ADQLDQARQIIDQRVNGLGVGGSEVVVNGNTIVITVPGDDGKQARALGQTARLYIRPVVE 132

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +    P+K                 N          EQ+  I  QR              
Sbjct: 133 QAPATPQKPD--------------PNAKKVADMTPDEQTAAIDEQRAL------------ 166

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
              R       +    RLR  +G                                   + 
Sbjct: 167 ---RQAPANADKATLDRLRAEMGKLD--CSASANDPLVGHDRPNEYLVACGEKDGMVYLL 221

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
           + + I G  +  A A  +       V++ F   G + + E T  ++G   AV LD RVL+
Sbjct: 222 EPMLIDGRDIANAKAGQNQTG-AWTVNVDFKGDGKKTWAEYTGKHVGTQTAVTLDTRVLS 280

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           AP INQ I     +ISG+FT + A  LA  L+ GSLP+   + + + V A LG  S+  G
Sbjct: 281 APSINQQIIG-TTEISGSFTQDEADQLANALKYGSLPLSFAVSDAQTVSATLGLHSLQAG 339

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGI 420
             A + GL+L++++ ++ Y   G ++  S+ L   +   ++ LL    G TL L  IAG+
Sbjct: 340 LIAGLVGLILVLIYSLIYYRAMGFISVLSLILAGAMVYGIIVLLGRWIGFTLDLAGIAGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++GIG+  DS ++  ERI++E R+ ++V  ++  G+  A  T++  N  + I   +++  
Sbjct: 400 IIGIGMTADSFVVYFERIKDEMREGRTVRSAVSRGWQSARRTVWTGNAVSFICAAIIYML 459

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
             GAVRGFA T+GL+ LI +     +   +++   R K +    
Sbjct: 460 AVGAVRGFAFTLGLTTLIDIVIVFLVTHPLVVLASRNKFLSRPS 503



 Score = 95.5 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 92/261 (35%), Gaps = 15/261 (5%)

Query: 572 GIDFKGGIQLGVLANR-----PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
           G +  G   + V           + +      ++    D    +       ++      G
Sbjct: 237 GQNQTGAWTVNVDFKGDGKKTWAEYTGKHVGTQTAVTLDTRVLSAPSINQQIIGTTEISG 296

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                         K   +     + + + V   +    ++ G++  ++  I +LIY  I
Sbjct: 297 SFTQDEADQLANALKYGSLPLSFAVSDAQTVSATLGLHSLQAGLIAGLVGLILVLIYSLI 356

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            ++      ++ +LIL      G   L G       +L  +A ++  IG + +  VV ++
Sbjct: 357 YYR-AMGFISVLSLILAGAMVYGIIVLLGRWIGFTLDLAGIAGLIIGIGMTADSFVVYFE 415

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYT-SMAAFISVLPMAVWGGSVIGSFAIPM 801
           R++  M+      + R  + +   ++  R+V+T +  +FI    + +     +  FA  +
Sbjct: 416 RIKDEMRE---GRTVRSAVSRGW-QSARRTVWTGNAVSFICAAIIYMLAVGAVRGFAFTL 471

Query: 802 AFGIVVAASSSIFIAAPILLF 822
               ++       +  P+++ 
Sbjct: 472 GLTTLIDIVIVFLVTHPLVVL 492


>gi|67922933|ref|ZP_00516429.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Crocosphaera watsonii WH 8501]
 gi|67855216|gb|EAM50479.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Crocosphaera watsonii WH 8501]
          Length = 470

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 141/474 (29%), Positives = 208/474 (43%), Gaps = 61/474 (12%)

Query: 43  RISLGLDLRGGSHLVLEVDEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNK 97
            + LGLDLRGG+ L +++   +         L+     L + +   G+    ++   Q+K
Sbjct: 26  PLQLGLDLRGGAQLTIQLQPTEEVTTISQEDLEAAKTVLENRVNGLGVAEPVVQTLGQDK 85

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I +        E     +    Q    +     +  L V                     
Sbjct: 86  IVVQLPGVSDPEQAERVLGGTAQLEFRQQRQGTEGQLPVEFG------------------ 127

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
                  E  R+  + + + E T +       L Q   E D   L               
Sbjct: 128 ----LRREKEREL-NALRLGEPTPEEEERIAELTQSIKESDQIILELFESVGLSGKNLDN 182

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                 +G  + V    D++G     E    I+G   +      D     PVV + F   
Sbjct: 183 ARYGPTQGNQWEVIIDFDNEGGNKFAELTKNIAGTGRSIGIFLDDVLISAPVVGVQFAAT 242

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
           G                                 I  G A I+GNFT++ A  LA  LR 
Sbjct: 243 G---------------------------------ITGGSAVITGNFTVDEANELAVQLRG 269

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           GSLP  + +VE R VGA LG DSI +   A VAGL L+++FM V Y   GL+AD ++ + 
Sbjct: 270 GSLPFPVEVVENRTVGATLGRDSIQRSIYAAVAGLALVLIFMGVYYRLPGLIADLALGVY 329

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
            +LTLA  SL+G TLTLP IAG +L IG+AVD+N+L+ ER REE R  + ++  ++ GFS
Sbjct: 330 TLLTLACYSLIGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRSGKPLYSGVESGFS 389

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           RA+S+I DSN+T +IA   LF  G G V+GFA+T+ + +L+SMFTA++  R  +
Sbjct: 390 RAFSSILDSNVTTVIACGALFGLGSGLVKGFALTLAIGVLVSMFTALTCTRTFL 443



 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 88/224 (39%), Gaps = 4/224 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+ + I                      G+          V+ +   +     +     V
Sbjct: 225 LDDVLISAPVVGVQFAATGITGGSAVITGNFTVDEANELAVQLRGGSLPFPVEVVENRTV 284

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ I++ I   +     +LI++ + ++    L A   L +    TL  ++L G+ 
Sbjct: 285 GATLGRDSIQRSIYAAVAGLALVLIFMGVYYRLP-GLIADLALGVYTLLTLACYSLIGVT 343

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++   +       ++   +      + +++
Sbjct: 344 LTLPGIAGFILSIGMAVDANVLIFERTREELR---SGKPLYSGVESGFSRAFSSILDSNV 400

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
              I+   +   G  ++  FA+ +A G++V+  +++      LL
Sbjct: 401 TTVIACGALFGLGSGLVKGFALTLAIGVLVSMFTALTCTRTFLL 444


>gi|330960966|gb|EGH61226.1| acriflavin resistance protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 1036

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/637 (10%), Positives = 167/637 (26%), Gaps = 38/637 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLDINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I          +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPTLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   D+                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYADLILAYKDGAPLRLKDVAEIVGGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITNNLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVLVTFLFLRRFSATIIPSVAVPLSLVGTFGVMYLAGFSINNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPMQAALKGARQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEDQSRFYKASGAWIDWLI 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             +     W +    L  + +I  L    L Y +  KG   +             +S   
Sbjct: 515 DVYAGRLRWVLKHQPLTLLVAIATLALTVLLYIVVPKGFFPVQDTGVIQGISEAPQSVSF 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           +              K+  V               L 
Sbjct: 575 AAMSQRQQALADIILKDPAVVSLSSYIGVDGDNATLN 611



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIVLVVLVTFLFLRRFSATIIPSVAVPLSLVGTFGVMYLAGFSINNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPMQAALKGARQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +A  I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.5 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 12/87 (13%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +     I ++        + T++AA    +P+ +    G  +     + M  G+
Sbjct: 937  AERNRGVDPETAIYEAALLRFRPILMTTLAALFGAIPLMLASGSGAELRQPLGLVMVGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   ++F    I L+      + +R
Sbjct: 997  LLSQVLTLFTTPVIYLYFDRLGQRWSR 1023


>gi|293415364|ref|ZP_06658007.1| multidrug efflux system subunit MdtB [Escherichia coli B185]
 gi|291433012|gb|EFF05991.1| multidrug efflux system subunit MdtB [Escherichia coli B185]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAMTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAMTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|152971067|ref|YP_001336176.1| multidrug efflux system subunit MdtC [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895648|ref|YP_002920383.1| multidrug efflux system subunit MdtC [Klebsiella pneumoniae
           NTUH-K2044]
 gi|166233228|sp|A6TBH5|MDTC_KLEP7 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|150955916|gb|ABR77946.1| multidrug transport protein, outer membrane (RND family)
           [Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
 gi|238547965|dbj|BAH64316.1| multidrug efflux system outer membrane protein [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/667 (10%), Positives = 180/667 (26%), Gaps = 44/667 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISLAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  + +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVDLNPQALFNQGVSLDAVRTAISDANVRKPQGALEDSAHRWQVQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                       +                 +   +  V +  +
Sbjct: 235 LKTAAD--------------------YQPLIVHYQNGAAVRLGDVATVSDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQQTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENISRHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++       +  + +      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLAVSLTLTPMMCGWLLKSGKPHQPTRNRGFGRLLVAVQGG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +      +R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLKHSRLTGLVVLGTIALSVWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R  L+            D    F    +   G      +  +   +   +++     + 
Sbjct: 575 MRGKLQDFMKIIREDPAVDNVTGFTGGSRVNSGMMFITLKPRDQRHETAQQVIDRLRKKL 634

Query: 654 TEIVGPK 660
               G  
Sbjct: 635 ANEPGAN 641



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   E + + +T++   S+++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TISFNLPTGRSLSEASEAIDRAMTQLGVPSSVRGSFAGTAQVFQQTMNAQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    +F   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGVLYESYVHPLTILSTLPSAGVGALLALEIFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++  + I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRNGN--LTPEEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 7/216 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQQTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---SRHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FA+ ++  I ++ + S+    P++        K 
Sbjct: 461 REFAVTLSVAIGISLAVSL-TLTPMMCGWLLKSGKP 495


>gi|256840693|ref|ZP_05546201.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737965|gb|EEU51291.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 1054

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/634 (11%), Positives = 168/634 (26%), Gaps = 42/634 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPVDQYPQITPPV-------------VKISATYPGASALTVSQAVATPIEQELNGTPGMI 77

Query: 88  VFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +    IT++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMQSSSSNSGSLNITVTFDVSADADLAAVEIQNRVKLAESRLPAEVIQNGITIEKQAPSQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++      D      I  S       +D +       +          +     P RL  
Sbjct: 138 LMTLSLMSDDPKFDEIYLSNFATINVLDVLRRIPGVGRVSNIGSRYYGMQIWVYPDRLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           +  T   +       N        G + + D D                L          
Sbjct: 198 MGLTVKDLQDALKDQNRESAAGELGKQPVLDVDVT--------------LPITAPGRLST 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +    +       +                +    
Sbjct: 244 VKEFEDIVVRANPDGSIVRMSDVARVSLEASSYSTESGINGKNAAILGIYMLPGANALEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
                     +                      S      T      LV++V+F+ +   
Sbjct: 304 ATKVKEAMKDISKNFPEGLEYNFPFDMTEYISQSVHEVYKTLFEALFLVVLVVFLSLQNW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN-R 443
           +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +      
Sbjct: 364 RAALIPTIAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGIVVDDAIVVVENVERIMAE 423

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
           +  +   +           +  +++      V + F G   G   R F++T+ +S+L+S 
Sbjct: 424 ERVTAREATHKAMRELSGALIATSMVLAAVFVPVSFLGGITGQLYRQFSVTIVVSVLLST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA------IQFMRARFWGVGISI 554
             A+++  AM   I+R    K   I      +L            I     R    G  +
Sbjct: 484 VVALTLSPAMCAIILRPSHKKKAFIFRKINLWLAKGNKKYTKLLRISIANPRRILAGFGM 543

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
           +     +            + +G   + +       L   R+  +               
Sbjct: 544 VLVAIFVLNRVLPTSFIPEEDQGFFTVELEMPEGTTLERTRAVTDRAIEFLDHHPAVAYV 603

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +N          +    T  + +   +  +   +
Sbjct: 604 QNVTGSSPRVGTNQGRATLTVILKPWEERKSSGM 637



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 60/145 (41%), Gaps = 8/145 (5%)

Query: 689  KWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  + +L +  +   LG +A  G+E ++     ++TLIG +  + +++ +  +  
Sbjct: 889  SWIVPIAVLLSLPVATLGAYLGIWA-TGLENDIYYQIGLVTLIGLAAKNAILIVEFAK-- 945

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                   +        +        + TS+A  + +LPM +    G +   S    + FG
Sbjct: 946  -VQVDNGVDVVRAAIHAAQMRFRPILMTSLAFVLGMLPMVLASGPGSASRHSIGTGVFFG 1004

Query: 805  IVVAASSSIFIAAPILLFIYDWRAK 829
            ++VA +  I +     + IY  + K
Sbjct: 1005 MLVAITVGIVLVPFFFVLIYKIKGK 1029



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL     + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +     
Sbjct: 363 WRAALIPTIAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGIVVDDAIVVVENV--ERI 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPM 801
           +    ++ R+   K++ E  G  + TSM      +P+  + G  G +   F++ +
Sbjct: 421 MAEERVTAREATHKAMRELSGALIATSMVLAAVFVPVSFLGGITGQLYRQFSVTI 475


>gi|168818177|ref|ZP_02830177.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205345107|gb|EDZ31871.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 1026

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 170/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I        
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQINGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRQPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTDTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++ +      + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACSLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|330010880|ref|ZP_08306919.1| multidrug resistance protein MdtC [Klebsiella sp. MS 92-3]
 gi|328534355|gb|EGF60963.1| multidrug resistance protein MdtC [Klebsiella sp. MS 92-3]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/667 (10%), Positives = 179/667 (26%), Gaps = 44/667 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISLAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  + +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVDLNPQALFNQGVSLDAVRTAISDANVRKPQGALEDSAHRWQVQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                       +                 +   +  V +  +
Sbjct: 235 LKTAAD--------------------YQPLIVHYQNGAAVRLGDVATVSDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQQTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENISRHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++       +  + +      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLAVSLTLTPMMCGWLLKSGKPHQPTRNRGFGRLLVAVQGG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLKHTRLTGLVVLGTIALSVWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R  L+            D    F    +   G      +  +   +   +++     + 
Sbjct: 575 MRGKLQDFMKIIREDPAVDNVTGFTGGSRVNSGMMFITLKPRDQRHETAQQVIDRLRKKL 634

Query: 654 TEIVGPK 660
               G  
Sbjct: 635 ANEPGAN 641



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   E + + +T++   S+++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TISFNLPTGRSLSEASEAIDRAMTQLGVPSSVRGSFAGTAQVFQQTMNAQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    +F   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGVLYESYVHPLTILSTLPSAGVGALLALEIFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++  + I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRNGN--LTPEEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 7/216 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQQTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---SRHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FA+ ++  I ++ + S+    P++        K 
Sbjct: 461 REFAVTLSVAIGISLAVSL-TLTPMMCGWLLKSGKP 495


>gi|293410439|ref|ZP_06654015.1| multidrug efflux system subunit MdtB [Escherichia coli B354]
 gi|291470907|gb|EFF13391.1| multidrug efflux system subunit MdtB [Escherichia coli B354]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDSTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|242240121|ref|YP_002988302.1| multidrug efflux system subunit MdtB [Dickeya dadantii Ech703]
 gi|242132178|gb|ACS86480.1| acriflavin resistance protein [Dickeya dadantii Ech703]
          Length = 1040

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 65/609 (10%), Positives = 154/609 (25%), Gaps = 45/609 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGLV-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +     V   +   
Sbjct: 65  PDVMTSSVTAPLEHQFGSMSGLKQMSSQSSAGASVITLQFQLTLSLDVAEQDVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D                +++   +        +    +  +   +I   E    
Sbjct: 125 TNLLPTDLPFPPTYNKVNPADPPIMT-LAVTSTAMPMTQVQDMLETRIAQKISQVEGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   L     ++  +       N +     F      D       
Sbjct: 184 VTLAGGQRPSVRVKLNAGALASFGLSSESVRTAITAANVNTPKGSF------DGPTRSVT 237

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I  +                                     + +          
Sbjct: 238 LSANDQIRSVDDYRQLIITWKNNAP--------------VRLQDVATVEQAPENTKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    L   L+A         +          S    
Sbjct: 284 ANQNQAIILNIQRQPGANVIATADHIRNLLPTLQASLPKSVNVTLLADRTTTIRASVDDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYLFLRNAVATLIPSIAVPLSLVGTFAAMYFLGFSVNNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENIARYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFF 532
             G   R FA+T+ +SILIS   ++++   M   +        + +  ++ +        
Sbjct: 464 IIGRLFREFAVTLAVSILISAIVSLTLTPMMCARLLNHEALAHQNRFTRASERFFDWVIA 523

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +                   +  +  +      + I   G IQ  V A + +  +
Sbjct: 524 AYGRGLTRVLSHPWITLSVAIGTLVLTVLLYIVIPKGFFPIQDNGIIQGTVQAAQTISFN 583

Query: 593 VVRSNLESL 601
            +      +
Sbjct: 584 SMVDKQHQV 592



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 86/270 (31%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S               I +K    + +     V+ +   + L +    + +   
Sbjct: 233 TRSVTLSANDQIRSVDDYRQLIITWKNNAPVRLQDVATVEQAPENTKLAAWANQNQAIIL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +     +            +   + K +   +              +  EL+    
Sbjct: 293 NIQRQPGANVIATADHIRNLLPTLQASLPKSVNVTLLADRTTTIRASVDDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 349 --LAIALVVMVIYLFLR-NAVATLIPSIAVPLSLVGTFAAMYFLGFSVNNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---ARYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIIGRLFREFAVTLAVSILISAIVSLTLTP 492



 Score = 45.1 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 92/255 (36%), Gaps = 6/255 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         V   ++ +++  + +      ++     + +      A    ++ ++  
Sbjct: 779  DIRLVNSTGGVVPLDSIATIEERNGTLAVNHIDQFPSSTISFNVAPGYALGDAVKAIETT 838

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
              ++   S I           +  +   I  V+ + +AM I + + ++ +   +  ++TL
Sbjct: 839  QQQMQLPSDIITRFQGSTLAFQAALTSTIWLVVAAIVAMYIVLGVLYESFIHPVTILSTL 898

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   L    + G + N+ A+  ++ LIG    + +++ D            +S    
Sbjct: 899  PTAGVGALLALMISGSDLNIIAIIGIILLIGIVKKNAIMMID--FALAAEREHGMSPYQA 956

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++        + T+MAA +S +P+      G  +     I M  G+V++   ++F   
Sbjct: 957  IYQACLLRFRPILMTTMAALLSAVPLMFSTGVGAELRRPLGICMVGGLVMSQVLTLFTTP 1016

Query: 818  PILLFIYDWRAKNAR 832
             I L       +  R
Sbjct: 1017 VIYLLFDRLAHRLRR 1031


>gi|224538352|ref|ZP_03678891.1| hypothetical protein BACCELL_03243 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519981|gb|EEF89086.1| hypothetical protein BACCELL_03243 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1032

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 65/610 (10%), Positives = 171/610 (28%), Gaps = 50/610 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           +I  +G++  +        ++++P   P                       + V   + +
Sbjct: 2   LILLVGIISLV-----NLPMEQYPDIAPPTI---------SVSASYTGANAETVQKSVVV 47

Query: 73  YSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
             +E  + ++       +        I + F      +     V   +      L  +  
Sbjct: 48  PLEEAINGVENMLYMTSTSTNTGSGSIMVYFNQGTDPDMATVNVKNRVAEAEGLLPAEVT 107

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           K  +     +   + +               +         ++   +     +       
Sbjct: 108 KVGVTVQKRQNSMLKILALYSPDDSYDRNFINNYFSINIEPRLSRIKGVGNVMIMGD-EY 166

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
            +    +P+++ Q       +       N        G                      
Sbjct: 167 AMRIWMNPAKMAQYKLVPDDVINILADQNVEAATGTLGEDSENTFQYTLKYRGR------ 220

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
                          +    +                 +            +     +  
Sbjct: 221 ----------YQTPEEFENLVVKSLSSGEVLRLKDIAEVELGAQSYGYTSAVGKHPGSTC 270

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           + S  +  + N  I+    L A +        +             S      T      
Sbjct: 271 MISQTSGSNANEIIKEIDQLTAEIAKELPKGLVLEDLMSTKDFLDASIHEVVKTLIEAIL 330

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           LV++V+++ +   +  ++   SI ++++ T A + L+G +L L ++  +VL IG  VD  
Sbjct: 331 LVILVVYVFLQSVRSTIIPSISIIVSLVGTFAFIYLMGFSLNLITLFALVLVIGTVVDDA 390

Query: 432 ILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRG 487
           I+V E ++ +  +   S + +         + I  +++  +   +   F GG +      
Sbjct: 391 IVVVEAVQAKFDEGYRSPYKATTTAMDGISAAIVTTSLVFMAVFIPTSFMGGTSGTFYTQ 450

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRY--------------KKMKSIDINPLSRFFL 533
           F +TM +++ IS   A+++  A+   ++                +  K+ + +     F 
Sbjct: 451 FGLTMAVAVGISAVNALTLSPALCTLLMTPHIDTSNGQKLSFSSRFHKAFETSFNRILFK 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +   F R      G++I   +    +  T       +  G I + V       L+ 
Sbjct: 511 YKGGVKFFFKRKWMAWSGLAIAVVLLVFFMNTTKTGLIPDEDMGTIFVNVTTPPGSSLAQ 570

Query: 594 VRSNLESLQI 603
            +  ++ +  
Sbjct: 571 TKKTMDKIAE 580



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 93/246 (37%), Gaps = 6/246 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            + +   + L  +       Q    +        +  +  Q    ++    + ++ +  +
Sbjct: 234 SLSSGEVLRLKDIAEVELGAQSYGYTSAVGKHPGSTCMISQTSGSNANEIIKEIDQLTAE 293

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           I + +P   +    +         I + +  +I + + +++ +++        +    ++
Sbjct: 294 IAKELPKGLVLEDLMSTKDFLDASIHEVVKTLIEAILLVILVVYVFLQSVRSTIIPSISI 353

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           I+ +  T  F  L G   NL  + A++ +IG  V+D +VV + ++          S    
Sbjct: 354 IVSLVGTFAFIYLMGFSLNLITLFALVLVIGTVVDDAIVVVEAVQAKFDEGYR--SPYKA 411

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
              +++      V TS+      +P +  GG+       F + MA  + ++A +++ ++ 
Sbjct: 412 TTTAMDGISAAIVTTSLVFMAVFIPTSFMGGTSGTFYTQFGLTMAVAVGISAVNALTLSP 471

Query: 818 PILLFI 823
            +   +
Sbjct: 472 ALCTLL 477



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 7/164 (4%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGF 710
              E  G           ++   I  I + + +   ++  F  L  + ++   +  +  F
Sbjct: 838 YGYEFAGMTREEAETNNTVIVFAICIIFVYLILCALYESLFIPLAVMLSVPFGLMGSFLF 897

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             LFG+E N+     ++ LIG      +++ +      +    SI+   +    +   L 
Sbjct: 898 AKLFGLENNIYMQVGLIMLIGLLAKTAILLTE-YASTRRKQGMSIAAAAMSAAGVR--LR 954

Query: 771 RSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASS 811
             + T +     +LP+    G    G+ ++ +    GI +   +
Sbjct: 955 PILMTVLTMVFGMLPLVFASGAGANGNISLGLGVVGGITIGTLA 998


>gi|170730659|ref|YP_001776092.1| acriflavin resistance protein D [Xylella fastidiosa M12]
 gi|167965452|gb|ACA12462.1| acriflavin resistance protein D [Xylella fastidiosa M12]
          Length = 1071

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/553 (12%), Positives = 159/553 (28%), Gaps = 40/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G+L        +  +   P     + +                 
Sbjct: 9   RRPIATSLLMFGVLLLGIL-----GYKKLPMSALPEVDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + ITL F+  +  +  A  V   +  
Sbjct: 55  NAKTMAALVTTPLEHQLGQISGLDMMSSDSSAGLSTITLQFSTHKNLDIAAQDVQAAIHQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +++   +        E +         ++       
Sbjct: 115 AT--LPSTLPHQPIYNRVNPADAAIIT-LKLTSDTLPLRELNTYADAILAQRLSQISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N +        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRNTLTQANVNAPKGSLNGKNQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D  +                      D                 N+   +       
Sbjct: 232 QLKDASQ--------------------YRDTIIHYQNGHPVRLSEVANVVDGVENDQISA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A          +   +   T+E    +   LRA         V          S   
Sbjct: 272 WANAKPAVLLEIRRQPGANIIQTVEQIRAILPQLRAVLPNDVHLDVFSDRTETIRSSVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +  GLV+ V+F+ +      L+   ++ L++  T ++++  G +L   S+  +V
Sbjct: 332 VKFTLLLTIGLVVAVIFVFLRRLWATLIPSVAVPLSLAGTFSVMAFNGMSLDNFSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   TI    I+ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  +  +++ISM  ++++   M  ++++   +   D    S    +    
Sbjct: 452 GVTGRLFHEFAWVLSTAVVISMLVSLTLTPMMCAYLLKPDTLPEGDSPTPSTKITLWTRT 511

Query: 539 AIQFMRARFWGVG 551
              + R   W + 
Sbjct: 512 VALYERTLDWVLM 524



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 90/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  ++  +      +      +   +    +        V L+ +     
Sbjct: 230 NDQLKDASQYRDTIIHYQNGHPVRLSEVANVVDGVENDQISAWANAKPAVLLEIRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-----KGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I  +  +I++
Sbjct: 290 NIIQTVEQIRAILPQLRAVLPNDVHLDVFSDRTETIRSSVHEVKFTLLLTIGLVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   L     + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATLIPSVAVPLSLAGTFSVMAFNGMSLDNFSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S R+  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 466 STAVVISMLVSLTLTP 481



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 91/253 (35%), Gaps = 11/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V   R + LS +     +     IS Q           L      S A   + +   +
Sbjct: 808  MTVGTGRIIPLSALADAKVTNAPRVISHQQQLPAVTISFNLAQGYSLSHAVKAIEQARTQ 867

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                    +      +       ++    +  ++ S + + I + + ++ +   L  I+T
Sbjct: 868  LQIPPHVRAQFIGKAVEFTSSQSDI----VWLLLASIVVIYIVLGMLYESYIHPLTIIST 923

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    L G+  ++ ++  ++ LIG    + +++ D   +     +T  S  D
Sbjct: 924  LPSAGVGALLALMLCGLSLSVDSIVGIVLLIGIVKKNAIMMIDFAIE---ARSTGSSAHD 980

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+ AA +  LP+A+    G  +     I +  G++++   +++  
Sbjct: 981  AIRRACLLRFRPIIMTTTAALLGALPLALSDGIGSELRRPLGITIVGGLLLSQLITLYTT 1040

Query: 817  APILLFIYDWRAK 829
              I LF      +
Sbjct: 1041 PVIYLFFERLSER 1053


>gi|146312328|ref|YP_001177402.1| multidrug efflux system subunit MdtB [Enterobacter sp. 638]
 gi|167008976|sp|A4WCC1|MDTB_ENT38 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|145319204|gb|ABP61351.1| acriflavin resistance protein [Enterobacter sp. 638]
          Length = 1040

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/586 (10%), Positives = 155/586 (26%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILIAGII-----GYRFLPVSALPEVDYPTIQ---------VITLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +    V  N +                    
Sbjct: 184 VTLSGGQRPAVRVKLNAQAIAALGLTSETIRTAIVSANVNSAKGSLDGPT---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V +S      +   +          +                 + +       G  
Sbjct: 234 --RAVTLSANDQMQSADEYRQ--------LIVAYQNGAPIRLGDVATVEQGAENRWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S S  
Sbjct: 284 ANKEQAIVMNVQRQPGANIIDTADSIRAMLPQLIESLPKSVNVKVLSDRTTNIRASVSDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAMALVVMIIYVFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++   M   +       K+ +    +      +I 
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSAESLRKQNRFSRASERMFERIIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
               +           +S+     ++ ++    +  G        +
Sbjct: 524 AYGRMLEKVLNHPWATLSVALGTLALSVMLWIVIPKGFFPIQDNGI 569



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAMALVVMIIYVFLR-NVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 92/254 (36%), Gaps = 6/254 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V         V  S + +++           ++     + +   D+ +    +E +   
Sbjct: 779  TVRLTSKNGGIVPLSAIATVEQRFAPLSINHLDQFPSTTISFNVPDNYSLGEAVESILNA 838

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
               +   + IQ          +  +   I  ++ + +AM I + + ++ +   +  ++TL
Sbjct: 839  EKTLNFPTDIQTQFQGSTLAFQAALGNTIWLIVAAVVAMYIVLGVLYESFIHPVTILSTL 898

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   L    L G E ++ A+  ++ LIG    + +++ D            ++ RD 
Sbjct: 899  PTAGVGALLALMLSGSELDVIAIIGIILLIGIVKKNAIMMID--FALAAEREQGMAPRDA 956

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++        + T+MAA +  LP+ +    G  +     I M  G++V+   ++F   
Sbjct: 957  IFQACLLRFRPILMTTMAALLGALPLMLSTGVGAELRRPLGIGMVGGLLVSQVLTLFTTP 1016

Query: 818  PILLFIYDWRAKNA 831
             I L       K  
Sbjct: 1017 VIYLLFDTLALKMK 1030


>gi|317969771|ref|ZP_07971161.1| preprotein translocase subunit SecF [Synechococcus sp. CB0205]
          Length = 325

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/183 (32%), Positives = 99/183 (54%), Gaps = 5/183 (2%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                    +GP +  +L++  ++ +++S  A+ +YI  R+   FA  A+  L  DI  T
Sbjct: 144 NPQQVAINTIGPTLGSQLLKGSLISLLVSFAAIALYISFRYDGVFAGLALLCLAHDIVIT 203

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            G FA  G    IE N     A++T+ GYSVND VVV+DR+R+  +     +S  + +D 
Sbjct: 204 CGVFAWLGLISGIEVNSLFAVALITVAGYSVNDTVVVFDRIREQKRALQ-GLSLLEQVDV 262

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +++ TL RS+YTS    + ++ + ++GGS +  FA+ +  GI V + SSI IA  +L  +
Sbjct: 263 AVDATLTRSLYTSFTTLLPLVSLLLFGGSSLFWFAVALTVGIGVGSWSSIGIAPTLLPVL 322

Query: 824 YDW 826
              
Sbjct: 323 SRR 325


>gi|307312359|ref|ZP_07591993.1| acriflavin resistance protein [Escherichia coli W]
 gi|306907530|gb|EFN38033.1| acriflavin resistance protein [Escherichia coli W]
 gi|315061351|gb|ADT75678.1| multidrug efflux system, subunit C [Escherichia coli W]
 gi|323378069|gb|ADX50337.1| acriflavin resistance protein [Escherichia coli KO11]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTISASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + IT++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAITQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P IS  L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTISASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|146338216|ref|YP_001203264.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           ORS278]
 gi|146191022|emb|CAL75027.1| Putative component of multidrug efflux pump, acrB/acrD/acrF family
           [Bradyrhizobium sp. ORS278]
          Length = 1050

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 83/687 (12%), Positives = 176/687 (25%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC IG +       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVALFICLIGAIAI-----PLLAVAQYPIIAPP-------------SISISTSY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L       +   L            S    Q +IT +F       + + +V  
Sbjct: 50  PGASPENLYNSVTRLIEEELNGASGILNFESTSDSLGQVEITANFVPGTSTNDASVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L     +  ++        + +            +     +IR  + +I   
Sbjct: 110 RLKRVEARLPRAVIQQGILVEEASAAVLQIITLQSTDGSLDEVGLGDFMIRNVLGEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP++L     T   ++      N        G        
Sbjct: 170 PGVGRATLY-STERSLRVWLDPAKLIGYGLTADDVTKSIGAQNAQVSSGSIGAEPATTVQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  K ++                 +    I                 I       
Sbjct: 229 RTSALVLVKGQL-------------DSPDEFGAIILRANSDGSTVRLRDVARIEIGGLSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 QFNTRLNGKPTAGLSVLLSPSGNALATASAVDAKMKELSRFFPSNIAYEIPYDITPVVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ ++    + + ++ T A L L+G ++ + ++
Sbjct: 336 SIKRVLMTLVEAVVLVFVVMFLFLQNIRYTIIPTIVVPVALLGTCATLMLVGYSINMLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL +G+ VD  I+V E +      +  S   +      +    I    +  +   V 
Sbjct: 396 FGMVLAVGILVDDAIVVVENVERIMGEEGLSPKEATRKAMGQITGAIIGITLVLMAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDIN 526
           + FF G      R F++TM  +I  S   A+S+  A+   +++  +              
Sbjct: 456 MAFFPGSVGIIYRQFSVTMVAAIGFSALLALSLTPALCATLLKPVQAGHGHAKTGVFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                F       +     +  G  + I              L  G              
Sbjct: 516 NRFMDFSRTKYTGVVGGALKRTGRLMMIYAIFIVGLSFAFIQLPGGFLPVDDQGFITTDV 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    S       +++  +      +G ++      +        T    +  K  +E  
Sbjct: 576 QTPADSSYARTQAAVEAVEKYLAKREGIEDVTFLTGFSYAGQGVNTAQAFISLKDWSERG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
              +         +    L    I  +
Sbjct: 636 KHDSAAALVADINRDLASLRDAKITAL 662



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + +     + + +  T     L G   N+  +  ++  +G  V+D +VV + +     
Sbjct: 362 IRYTIIPTIVVPVALLGTCATLMLVGYSINMLTMFGMVLAVGILVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S ++   K++ +  G  +  ++      +PMA + GSV      F++ M   I 
Sbjct: 420 MGEEGLSPKEATRKAMGQITGAIIGITLVLMAVFVPMAFFPGSVGIIYRQFSVTMVAAIG 479

Query: 807 VAASSSIFIAAPILLFIYD 825
            +A  ++ +   +   +  
Sbjct: 480 FSALLALSLTPALCATLLK 498



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 77/191 (40%), Gaps = 13/191 (6%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G  +  +L   +  + + +SA+ + + +   ++ W   
Sbjct: 834  DALNEMERLAAKLPRGFGYEWTGQSLQEKLSGSQAPLLLGLSALVVFLCLAALYESWTIP 893

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  + T+ L I   +    L G+  ++    A++T+IG +  D +++ +  +    L   
Sbjct: 894  LAVLLTVPLGILGAVVAANLRGLSNDVYFTVALITIIGLAAKDAILIIEFAKD---LRAH 950

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                     ++ +      + T +A    VLPM++    GG+   +    +  G++    
Sbjct: 951  GKPLVAATIEACSLRFRPIIMTGLAFVCGVLPMSMATGAGGASQQALGTNVMGGMI---- 1006

Query: 811  SSIFIAAPILL 821
             ++ I A +++
Sbjct: 1007 -AVVILALLMV 1016


>gi|270157445|ref|ZP_06186102.1| RND family multidrug efflux transporter [Legionella longbeachae
           D-4968]
 gi|289164164|ref|YP_003454302.1| multidrug efflux transporter [Legionella longbeachae NSW150]
 gi|269989470|gb|EEZ95724.1| RND family multidrug efflux transporter [Legionella longbeachae
           D-4968]
 gi|288857337|emb|CBJ11164.1| putative multidrug efflux transporter [Legionella longbeachae
           NSW150]
          Length = 1028

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 75/621 (12%), Positives = 183/621 (29%), Gaps = 46/621 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN-RISLGLDLRGGSHLVLEV 60
           +     +++  +I   G+     N +    + ++P        I  G             
Sbjct: 9   KRPVLAMVISLLIFLFGI-----NAIYNMQIRQYPRMDNTVITIMTG----------YPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            + D + GF+    ++  +  +       S  Q  + ITL+   +   +     V   +Q
Sbjct: 54  ADADLIAGFITSPIEKAVASAEGIDYMTSSSTQGLSTITLNIKLNFDPQIAFTDVMSKVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L  + ++ +++ T++   +++    +         + +    R    Q+   +  
Sbjct: 114 QTINQLPKESQQPVILKTSDASTALMYISLDST--QMSPQQITDYATRVVQPQLQTVDGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP ++  L    + +S      N           ++       
Sbjct: 172 AKADILGGSTYSMRIFLDPQKMAALGVAPSDVSAVLAKNNFLTAAGNTKGEYVA------ 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                            TA  D        ++                 I          
Sbjct: 226 --------------LSITAKTDLNNADQFSNLIVKSDKGSIVRLRDIGKIELGSQSYDSS 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        +     +    I     +   +     P     +          S  
Sbjct: 272 VTFNGKKAVFISITPTPTANPLTVISAVRKMLPSVIKEFPPSLTGTIVYDATAFIRASLD 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A +V++V+F+ +   +   +   +I L+++    L+ +LG ++ L ++   
Sbjct: 332 EVTHTIIEAALIVIVVIFLFLGSIRSVFIPIVTIPLSLVGVCTLMLILGYSINLLTLLAF 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     + ++ F +  +G     + +    IT       + F 
Sbjct: 392 VLAIGLVVDDAIVVVENVHRHIEEGKTPFDAAIIGAREIATPVIAMTITLAAVYAPIGFM 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIF-----IIRYKKMKSIDINPLSRFF 532
           G   G   + FA T+  +++IS   A+++   M        I   K +  +D        
Sbjct: 452 GGLTGALFKEFAFTLASAVIISGVIALTLSPMMCSKVLSKDITSGKFVHFLDTFFNKLKS 511

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +              +++  +       T       + +G   +  +  +   L+
Sbjct: 512 KYQKALHSLLDTRVIMLYFAAVVILMLPYLYTHTSAETAPDEDQGFFFVMAMIPQYATLN 571

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            + +  +       SF   + 
Sbjct: 572 YIEAFTKPFDEIYKSFPETEN 592



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 65/204 (31%), Gaps = 6/204 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +            + V +M+   I E  P  T          I   L       +  +
Sbjct: 282 ISITPTPTANPLTVISAVRKMLPSVIKEFPPSLTGTIVYDATAFIRASLDEVTHTIIEAA 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            I +++              I T+ L +        + G   NL  + A +  IG  V+D
Sbjct: 342 LIVIVVIFLFLGSIRSVFIPIVTIPLSLVGVCTLMLILGYSINLLTLLAFVLAIGLVVDD 401

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +      +  D       E     +  ++       P+   G   G++
Sbjct: 402 AIVVVENVH---RHIEEGKTPFDAAIIGAREIATPVIAMTITLAAVYAPIGFMGGLTGAL 458

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
              FA  +A  ++++   ++ ++ 
Sbjct: 459 FKEFAFTLASAVIISGVIALTLSP 482



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 89/271 (32%), Gaps = 11/271 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              +    +       +  G I +  +    V LS V + +E       S           
Sbjct: 739  YQVIPQLSRSFRMSPEELGQIYVRTINGTMVPLSTVVTLVEKTVPNAASHFQQMNSATIQ 798

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +            + +   + + +         +     + +  L        + + I
Sbjct: 799  AVMMPGKTLGEGLQFLQKEADQVLPKGFSYDYGGESRQFMQEGNALLF-----AFVFAII 853

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +++ +   L  + ++ + I   L    L     N+     ++TLIG      
Sbjct: 854  IIFLVLSAQYESFRDPLIVLISVPMSICGALIPLNLGLASINIYTQVGLITLIGLISKHG 913

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D    N      ++  R  ++++    L   + T+ A    VLP+ +    G    
Sbjct: 914  ILIVD--FANHLQREKNLDKRAAVEEAAGIRLRPILMTTAAMVFGVLPLLIASGAGAVSR 971

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + +A G+++    ++F+   +  +I +
Sbjct: 972  FDIGLVIATGLLIGTGFTLFVVPTLYTYIAE 1002


>gi|217972385|ref|YP_002357136.1| acriflavin resistance protein [Shewanella baltica OS223]
 gi|217497520|gb|ACK45713.1| acriflavin resistance protein [Shewanella baltica OS223]
          Length = 1047

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/537 (10%), Positives = 153/537 (28%), Gaps = 38/537 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGIVS-----FSKLSIREMPDVESPVVT---------ISTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SAAIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D K  ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPEDAKDPVVSKDNGSGEPSVYVNLSSS--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   ++      N    G                
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDITNALRKENIETPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 217 ---GQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNISLGIIAQSDANPLLVAKEVHQEVDRVQDFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++LG ++ L ++  ++
Sbjct: 334 VYSTLYVTGALVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANMLGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           G        F++ + +S+L S   A+++   +   +++     +     + R F   
Sbjct: 454 GMVGLLFTEFSVMLAVSVLFSSLVALTLTPVLSSKLLKANVKPNRFNRWVDRGFARM 510



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 88/284 (30%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L            V + V +++  +        + +V    +  + R        +
Sbjct: 279 VNISLGIIAQSDANPLLVAKEVHQEVDRVQDFLPEGTSLVVDFDSTVFIDRSINEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        + G   NL  + A++  IG
Sbjct: 339 YVTGALVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAANMLGYSINLLTLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVLFSSLVALTLTPVLSSKLLKANVKPNR 498



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 699  TLILDITKTLGFFA-LFGIEFNLTAV-----AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L++  T  +G F    G+      +       ++ LIG    + +++ +      +L  
Sbjct: 878  PLVVMFTVPMGVFGGFLGLLITSQGINIYSQIGMIMLIGMVTKNGILIVEFAN---QLRD 934

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                    I  + +  L   + T+    +  +P+      G     +    + FG+  A 
Sbjct: 935  RGFELDKAIIDASSRRLRPILMTAFTTLVGAVPLIFSTGAGSESRIAVGTVVFFGMAFAT 994

Query: 810  SSSIFIAAPILLFI 823
              ++ +   +   I
Sbjct: 995  FVTLLVIPAMYRLI 1008


>gi|153001682|ref|YP_001367363.1| acriflavin resistance protein [Shewanella baltica OS185]
 gi|151366300|gb|ABS09300.1| acriflavin resistance protein [Shewanella baltica OS185]
          Length = 1047

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/537 (10%), Positives = 153/537 (28%), Gaps = 38/537 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGIVS-----FSKLSIREMPDVESPVVT---------ISTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SAAIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D K  ++          V    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPEDAKDPVVSKDNGSGEPSVYVNLSSS--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   ++      N    G                
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDITNALRKENIETPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 217 ---GQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNISLGIIAQSDANPLLVAKEVHQEVDRVQDFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++LG ++ L ++  ++
Sbjct: 334 VYSTLYVTGALVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANMLGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           G        F++ + +S+L S   A+++   +   +++     +     + R F   
Sbjct: 454 GMVGLLFTEFSVMLAVSVLFSSLVALTLTPVLSSKLLKANVKPNRFNRWVDRGFARM 510



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 88/284 (30%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L            V + V +++  +        + +V    +  + R        +
Sbjct: 279 VNISLGIIAQSDANPLLVAKEVHQEVDRVQDFLPEGTSLVVDFDSTVFIDRSINEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        + G   NL  + A++  IG
Sbjct: 339 YVTGALVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAANMLGYSINLLTLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVLFSSLVALTLTPVLSSKLLKANVKPNR 498



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 699  TLILDITKTLGFFA-LFGIEFNLTAV-----AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L++  T  +G F    G+      +       ++ LIG    + +++ +      +L  
Sbjct: 878  PLVVMFTVPMGVFGGFLGLLITSQGINIYSQIGMIMLIGMVTKNGILIVEFAN---QLRD 934

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                    I  + +  L   + T+    +  +P+      G     +    + FG+  A 
Sbjct: 935  RGFELDKAIIDASSRRLRPILMTAFTTLVGAVPLIFSTGAGSESRIAVGTVVFFGMAFAT 994

Query: 810  SSSIFIAAPILLFI 823
              ++ +   +   I
Sbjct: 995  FVTLLVIPAMYRLI 1008


>gi|312602826|ref|YP_004022671.1| acriflavin resistance plasma membrane protein [Burkholderia
           rhizoxinica HKI 454]
 gi|312170140|emb|CBW77152.1| Acriflavin resistance plasma membrane protein [Burkholderia
           rhizoxinica HKI 454]
          Length = 522

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 37/408 (9%), Positives = 102/408 (25%), Gaps = 28/408 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++   G++        Q  +  +P A+P + I          +       
Sbjct: 10  RPIFAGVLSVLVLLAGVIALF-----QLPIFEYPEAVPPSVI---------VYAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N   T++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEEQINGVENMLYMQSQANSDGNMATTVTFKLGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 ALPRLPEDVQRLGVTTVKSSPTLTMVVHLISPNDRYDMTYLRNYALINVKDRLERIQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    +P ++ Q     + +       N      + G          Q 
Sbjct: 176 QVQLWGSGDYSMRVWLNPQKVAQRGMAASDVINAIREQNVQVAAGVVGASPSLPGAPLQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    +                 +    +      
Sbjct: 236 SVNAQGRLQTEE-------------QFGDIVLKTSPDGGVTHLRDVARVELGASEYGLRA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L          +     +     E      A L+A   P     +          S + 
Sbjct: 283 LLDNKPAVAIAINQSPGANSLAISEQVRRTMAELKADMPPGVEYRIVYDPTQFVRASINA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
              T      LV+IV+ + +   +  ++   ++ ++++ T+   + L 
Sbjct: 343 VVHTLLEAIALVVIVVIVFLQTWRASIIPLIAVPVSIVGTVVPDAGLM 390


>gi|315618145|gb|EFU98736.1| multidrug resistance protein mdtC [Escherichia coli 3431]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 166/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQMLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/277 (12%), Positives = 91/277 (32%), Gaps = 8/277 (2%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                + T+           + +       V L  V +  +S+Q    +          L
Sbjct: 224 THRWQIQTNDELKTAAEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTNAKPAILL 283

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  +    + +     +     ++ E +P +             R  + +    +IIS  
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQMLIISVA 343

Query: 679 AMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            +++ +++  +     +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|331677987|ref|ZP_08378662.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli H591]
 gi|331074447|gb|EGI45767.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli H591]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNVNVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I+IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIVISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  IV++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIVISLLVSL-TLTPMMCGWMLKASKPR 496



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|15838976|ref|NP_299664.1| acriflavin resistance protein D [Xylella fastidiosa 9a5c]
 gi|9107563|gb|AAF85184.1|AE004047_15 acriflavin resistance protein D [Xylella fastidiosa 9a5c]
          Length = 1077

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/553 (12%), Positives = 159/553 (28%), Gaps = 40/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G+L        +  +   P     + +                 
Sbjct: 15  RRPIATSLLMFGVLLLGIL-----GYKKLPMSALPEVDAPSLV---------VTTQYPGA 60

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    I         + ITL F+  +  +  A  V   +  
Sbjct: 61  NAKTMAALVTTPLEHQLGQISGLDIMSSDSSAGLSTITLQFSTHKNLDIAAQDVQAAIHQ 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +++   +        E +         ++       
Sbjct: 121 A--ILPSALPHQPIYNRVNPADAAIIT-LKLTSDTLPLRELNTYADAILAQRLSQISGVG 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N +        +    S G   
Sbjct: 178 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRNTLTQANVNAPKGSLNGKSQSYSIGTND 237

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D  +                      D                 ++   +       
Sbjct: 238 QLKDASQ--------------------YRDTIIHYQNGHPVRLSEVADVVDGVENDQISA 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A          +   +   T+E    +   LRA         V          S   
Sbjct: 278 WANAKPAVLLEIRRQPGANIIQTVEQIRAILPQLRAVLPTDVHLDVFSDRTETIRASVHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +  GLV+ V+F+ +      L+   ++ L++  T ++++  G +L   S+  +V
Sbjct: 338 VKFTLLLTIGLVVAVIFVFLRRLWATLIPSVAVPLSLAGTFSVMAFNGMSLDNLSLMALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   TI    I+ +   + L    
Sbjct: 398 VATGFVVDDAIVMIENIVRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMP 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  +  +++ISM  ++++   M  ++++   +   D    S    +    
Sbjct: 458 GVTGRLFHEFAWVLSTAVVISMLVSLTLTPMMCAYLLKPDTLPESDSPTPSTKITLWTRT 517

Query: 539 AIQFMRARFWGVG 551
              + R   W + 
Sbjct: 518 VALYERTLDWVLM 530



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 91/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  ++  +      +    + +   +    +        V L+ +     
Sbjct: 236 NDQLKDASQYRDTIIHYQNGHPVRLSEVADVVDGVENDQISAWANAKPAVLLEIRRQPGA 295

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I  +  +I++
Sbjct: 296 NIIQTVEQIRAILPQLRAVLPTDVHLDVFSDRTETIRASVHEVKFTLLLTIGLVVAVIFV 355

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   L     + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 356 FLRRLW-ATLIPSVAVPLSLAGTFSVMAFNGMSLDNLSLMALVVATGFVVDDAIVMIENI 414

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S R+  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 415 ---VRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMPGVTGRLFHEFAWVL 471

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 472 STAVVISMLVSLTLTP 487



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 90/253 (35%), Gaps = 11/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V   R + LS +     +     IS Q           L      S A   + +   +
Sbjct: 814  MTVGTGRIIPLSALADAKVTNAPRVISHQQQLPAVTISFNLAQGYSLSHAVKAIEQARTQ 873

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                           +       ++    +  ++ S + + I + + ++ +   L  I+T
Sbjct: 874  LQIPPQVRVQFIGKAVEFTSSQSDI----VWLLLASIVVIYIVLGVLYESYIHPLTIIST 929

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    L G+  ++ ++  ++ LIG    + +++ D   +     +T  S  D
Sbjct: 930  LPSAGVGALLALMLCGLSLSVDSIVGIVLLIGIVKKNAIMMIDFAIE---ARSTGSSAHD 986

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+ AA +  LP+A+    G  +     I +  G++++   +++  
Sbjct: 987  AIRRACLLRFRPIIMTTAAALLGALPLALGDGIGAELRRPLGITIVGGLLLSQLITLYTT 1046

Query: 817  APILLFIYDWRAK 829
              I LF      +
Sbjct: 1047 PVIYLFFERLSER 1059


>gi|300902278|ref|ZP_07120275.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 84-1]
 gi|301304485|ref|ZP_07210596.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 124-1]
 gi|331683761|ref|ZP_08384357.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli H299]
 gi|300405640|gb|EFJ89178.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 84-1]
 gi|300840211|gb|EFK67971.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 124-1]
 gi|315255412|gb|EFU35380.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 85-1]
 gi|331078713|gb|EGI49915.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli H299]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRSSLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLNWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRSSLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|194367462|ref|YP_002030072.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
 gi|194350266|gb|ACF53389.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
          Length = 1077

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 51/491 (10%), Positives = 140/491 (28%), Gaps = 35/491 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +   P     + +                     +   +    +     +    +
Sbjct: 29  YRKLPVSALPEIDAPSLV---------VTTQYPGANATTMASLVTTPLERQFGQISGLEL 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                    + I L F+  R  +  A  V   ++     L        +        + +
Sbjct: 80  MTSDSSAGLSTIILQFSMDRDIDIAAQDVQAAIRQAT--LPSSLPYQPVYNRVNPADAAI 137

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++   +        + +         ++   +       +  +   +  + +P++L  + 
Sbjct: 138 VT-LKLTSDTRPLRDVNNYADSILAQRLSQVQGVGLVSIAGNVRPAVRIQVNPAQLSNMG 196

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T  ++       N +        +    S G    +    E                  
Sbjct: 197 LTLEQLRSALTQANVNAPKGSLNGKTQSYSIGTNDQLSSAAE------------------ 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
               D        R         +   +                     +   +   T+E
Sbjct: 239 --YRDTIISYKNGRPVRLSDVAQVIDGVENDQLAAWADGKPAVLLEVRRQPGANIVQTVE 296

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
               L   L+          +          S    + T  +  GLV+ V+F+ +     
Sbjct: 297 RIRALLPQLQGVLPADVHLEIFNDRTETIRASVHEVQFTLILTIGLVVAVIFVFLRRLWA 356

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            ++   ++ L++  T A+++  G +L   S+  +V+  G  VD  I++ E I     + +
Sbjct: 357 TIIPSVAVPLSLAGTFAVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENIVRYIEQGK 416

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           S   + ++G  +   T+    ++ +   + L       G     FA  + +++++SM  +
Sbjct: 417 SGKEAAEIGARQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLSIAVVLSMLIS 476

Query: 504 ISIVRAMMIFI 514
           +++   M  ++
Sbjct: 477 LTLTPMMCAYL 487



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/256 (9%), Positives = 91/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  +++ +      +    + +   +        +    V L+ +     
Sbjct: 230 NDQLSSAAEYRDTIISYKNGRPVRLSDVAQVIDGVENDQLAAWADGKPAVLLEVRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYI 684
              + +E ++  + ++  +        +    +  +          + + I  +  +I++
Sbjct: 290 NIVQTVERIRALLPQLQGVLPADVHLEIFNDRTETIRASVHEVQFTLILTIGLVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   +     + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATIIPSVAVPLSLAGTFAVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S ++  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGKEAAEIGARQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 466 SIAVVLSMLISLTLTP 481



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 88/252 (34%), Gaps = 11/252 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V A   + LS +     S     +S Q           +      S A   + E    
Sbjct: 812  ITVGAGNIIPLSALAEGKVSSAPLLVSHQQQLPAVTVSFNVAPGYSLSEAVRAIQETKDS 871

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                    +              ++    +  ++ S + + I + + ++ +   +  I+T
Sbjct: 872  LDMPTHLHAEFIGKAAEFTGSQTDV----VWLLLASLVVIYIVLGVLYESYIHPITIIST 927

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    L G+  ++  +  ++ LIG    + +++ D   +  +      +  +
Sbjct: 928  LPPAGVGALLALMLCGLSLSVDGIVGIVLLIGIVKKNGIMMVDFAIEARRA---GANAHE 984

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+ AA +  LP+A+    G  +     I +  G++++   +++  
Sbjct: 985  AIRRACLLRFRPIMMTTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTT 1044

Query: 817  APILLFIYDWRA 828
              I L++  +  
Sbjct: 1045 PVIYLYMERFSE 1056


>gi|320646745|gb|EFX15632.1| multidrug efflux system subunit MdtC [Escherichia coli O157:H- str.
           493-89]
 gi|320652022|gb|EFX20375.1| multidrug efflux system subunit MdtC [Escherichia coli O157:H- str.
           H 2687]
 gi|320668104|gb|EFX34983.1| multidrug efflux system subunit MdtC [Escherichia coli O157:H7 str.
           LSU-61]
          Length = 1025

 Score =  154 bits (389), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGMVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|83721292|ref|YP_443379.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis E264]
 gi|167582427|ref|ZP_02375301.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis TXDOH]
 gi|167620519|ref|ZP_02389150.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis Bt4]
 gi|257139628|ref|ZP_05587890.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis E264]
 gi|83655117|gb|ABC39180.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis E264]
          Length = 1036

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/542 (12%), Positives = 150/542 (27%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNIKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHTPPPESHRFEAKVHGLIDRVIA 514

Query: 540 IQ 541
             
Sbjct: 515 RY 516



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNIKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAIVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+      G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIAGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|324019627|gb|EGB88846.1| putative ATP synthase F0, A subunit [Escherichia coli MS 117-3]
          Length = 1025

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGLSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I+IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIVISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 73/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G+  N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGLSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  IV++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIVISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|71276117|ref|ZP_00652397.1| Acriflavin resistance protein [Xylella fastidiosa Dixon]
 gi|71898382|ref|ZP_00680555.1| Acriflavin resistance protein [Xylella fastidiosa Ann-1]
 gi|71163035|gb|EAO12757.1| Acriflavin resistance protein [Xylella fastidiosa Dixon]
 gi|71731905|gb|EAO33963.1| Acriflavin resistance protein [Xylella fastidiosa Ann-1]
          Length = 1071

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 67/553 (12%), Positives = 159/553 (28%), Gaps = 40/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G+L        +  +   P     + +                 
Sbjct: 9   RRPIATSLLMFGVLLLGIL-----GYKKLPMSALPEVDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + ITL F+  +  +  A  V   +  
Sbjct: 55  NAKTMAALVTTPLEHQLGQISGLDMMSSDSSAGLSTITLQFSTHKNLDIAAQDVQAAIHQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +++   +        E +         ++       
Sbjct: 115 AT--LPSTLPHQPIYNRVNPADAAIIT-LKLTSDTLPLRELNTYADAILAQRLSQISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N +        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRNTLTQANVNAPKGSLNGKNQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D  +                      D                 N+   +       
Sbjct: 232 QLKDASQ--------------------YRDTIIHYQNGHPVRLSEVANVVDGVENDQISA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A          +   +   T+E    +   LRA         V          S   
Sbjct: 272 WANAKPAVLLEIRRQPGANIIQTVEQIRAILPQLRAVLPNDVHLDVFSDRTETIRSSVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +  GLV+ V+F+ +      L+   ++ L++  T ++++  G +L   S+  +V
Sbjct: 332 VKFTLLLTIGLVVAVIFVFLRRLWATLIPSVAVPLSLAGTFSVMAFNGMSLDNFSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   TI    I+ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  +  +++ISM  ++++   M  ++++   +   D    S    +    
Sbjct: 452 GVTGRLFHEFAWVLSTAVVISMLVSLTLTPMMCAYLLKPDTLPEGDSPTPSTKITLWTRT 511

Query: 539 AIQFMRARFWGVG 551
              + R   W + 
Sbjct: 512 VALYERTLDWVLM 524



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 90/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  ++  +      +      +   +    +        V L+ +     
Sbjct: 230 NDQLKDASQYRDTIIHYQNGHPVRLSEVANVVDGVENDQISAWANAKPAVLLEIRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-----KGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I  +  +I++
Sbjct: 290 NIIQTVEQIRAILPQLRAVLPNDVHLDVFSDRTETIRSSVHEVKFTLLLTIGLVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   L     + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATLIPSVAVPLSLAGTFSVMAFNGMSLDNFSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S R+  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 466 STAVVISMLVSLTLTP 481



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 91/253 (35%), Gaps = 11/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V   R + LS +     +     IS Q           L      S A   + +   +
Sbjct: 808  MTVGTGRIIPLSALADAKVTNAPRVISHQQQLPAVTISFNLAQGYSLSHAVKAIEQARTQ 867

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                    +      +       ++    +  ++ S + + I + + ++ +   L  I+T
Sbjct: 868  LQIPPQVRAQFIGKAVEFTSSQSDI----VWLLLASIVVIYIVLGVLYESYIHPLTIIST 923

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    L G+  ++ ++  ++ LIG    + +++ D   +     +T  S  D
Sbjct: 924  LPSAGVGALLALMLCGLSLSVDSIVGIVLLIGIVKKNAIMMIDFAIE---ARSTGSSAHD 980

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+ AA +  LP+A+    G  +     I +  G++++   +++  
Sbjct: 981  AIRRACLLRFRPIIMTTAAALLGALPLALSDGIGSELRRPLGITIVGGLLLSQLITLYTT 1040

Query: 817  APILLFIYDWRAK 829
              I LF      +
Sbjct: 1041 PVIYLFFERLSER 1053


>gi|332162601|ref|YP_004299178.1| multidrug efflux system subunit MdtB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666831|gb|ADZ43475.1| multidrug efflux system subunit MdtB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 1047

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 146/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPNDLPYPPIYSKVNPADPPILT-LAVTSSAIPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEDYRDLIVAYQNGAPVRLQDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           V          S +  
Sbjct: 284 ANNQQAIVLNIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTTTIRASVNDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIVLVVMVIYLFLRNAAATIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  + ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSAEDYRDLIVAYQNGAPVRLQDVATIEQGAENNKLAAWANNQQAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   V              +  EL+    
Sbjct: 293 NIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTTTIRASVNDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I  + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 349 --LAIVLVVMVIYLFLR-NAAATIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 6/200 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +E V +    I   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 830  EAVEAVTQAEQAIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPVTILSTLPTAGVGALLALMLTGHELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGAGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRA 828
               ++F    I L       
Sbjct: 1008 QVLTLFTTPVIYLLFDKLAR 1027


>gi|86142164|ref|ZP_01060674.1| HAE1 efflux family protein [Leeuwenhoekiella blandensis MED217]
 gi|85830916|gb|EAQ49373.1| HAE1 efflux family protein [Leeuwenhoekiella blandensis MED217]
          Length = 1068

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 62/512 (12%), Positives = 151/512 (29%), Gaps = 36/512 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG-FLQMYSDELRSFLKKE-GI 86
           Q  + +FP   P             + + + +          ++     L + +    G+
Sbjct: 29  QLPISQFPQIAP-------------TTVNIFIAYPGASADVLVKSTLVTLENSINGVQGM 75

Query: 87  GVFSM---RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
              +       +  + + F           +V   +  V   L    ++  +V T  +  
Sbjct: 76  RYMATDATSAGEATLRIIFEPGTDPNQAVVRVKTRVDQVMPLLPELVQREGVVITPIQPS 135

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            ++       +              + I +I   +   +          +    +P R+R
Sbjct: 136 MLMYVNLYSKEKSMDEKFLYNYANVKMIPEINRLKGVARSQILGSRRYAMRVWLNPDRMR 195

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
               +  ++       +   +    G     ++   +Y++  K                 
Sbjct: 196 AYDVSVDEVMEAMQEQSIVGRPGRLGRSSGIEAQSLEYVLTYKGR-------------YN 242

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
           +  +    I                 +            L        +       + + 
Sbjct: 243 EPEQYENIIIRANSEGESIRLKDIGKVELGSEFFDIYSNLDGHPSAAIVLKQNYGSNASD 302

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            I+        +RA   P     +          S      T      LV +V+F+ +  
Sbjct: 303 VIDEVKEKLEEMRADFPPGMDYKISYDVSKFLDSSIEQVIDTLRDAFILVALVVFIFLGD 362

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE--RIREE 441
            +  L+   ++ +++I    ++   G ++ + ++  +VL IG+ VD  I+V E    + E
Sbjct: 363 WRSTLIPIIAVPVSLIGAFFVIQFFGISINMVTLFALVLAIGIVVDDAIVVVEAVHAKFE 422

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILI 498
              + S + ++          I       +   + + F  G      R F+ITM  SI+I
Sbjct: 423 EHPHISPYRAVKQVLGEISGAIIAITGVMVSVFLPISFMSGPVGTFYRQFSITMASSIVI 482

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           S   A+++   +   +++    K    N  +R
Sbjct: 483 SALIALTLTPVLCAMLLKNNHGKEKKRNLFTR 514



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 101/287 (35%), Gaps = 15/287 (5%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                            + +    + + AN   +   ++   +     +      + + +
Sbjct: 226 IEAQSLEYVLTYKGRYNEPEQYENIIIRANSEGESIRLKDIGKVELGSEFFDIYSNLDGH 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGV 673
               +  +       + V++ VK+K+ E+           +   +S+ L   I + I  +
Sbjct: 286 PSAAIVLKQNYGSNASDVIDEVKEKLEEMRADFPPGMDYKISYDVSKFLDSSIEQVIDTL 345

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + I + + ++I    W   L  I  + + +         FGI  N+  + A++  IG 
Sbjct: 346 RDAFILVALVVFIFLGDWRSTLIPIIAVPVSLIGAFFVIQFFGISINMVTLFALVLAIGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA--VWG 790
            V+D +VV + +    + +   IS    + + + E  G  +       + V       + 
Sbjct: 406 VVDDAIVVVEAVHAKFEEHPH-ISPYRAVKQVLGEISGAII---AITGVMVSVFLPISFM 461

Query: 791 GSVI----GSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
              +      F+I MA  IV++A  ++ +   +  + + +   K  +
Sbjct: 462 SGPVGTFYRQFSITMASSIVISALIALTLTPVLCAMLLKNNHGKEKK 508



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/318 (9%), Positives = 82/318 (25%), Gaps = 6/318 (1%)

Query: 510  MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
            +  F         ++ N                      G      F             
Sbjct: 715  VFTFFAANYPQYELEFNNDLAMQKGVSIGKAMENLNIMIGSTYEQGFIKFGRFFKVYVQS 774

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            +          L +         V  S   +L+      +           ++  P    
Sbjct: 775  DPKFRRLPSDVLNMFVKNEDGEMVPYSAFMTLKKTQGPNEVTRFNMYNSAAIRGLPAPGY 834

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                 +E +++     +P       E +    +        + +I+      +       
Sbjct: 835  TTADAIEAIREVAATTLPKGYDIGWEGLSYDEANRGNESVYIFLIVLVFVYFVLAAQYES 894

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            +   L  + +L + +  +     + G++ ++ A   ++ L+G    + V++ +     + 
Sbjct: 895  FIIPLSVVFSLPVGVFGSFMVLKMMGLQNDIYAQIGLIMLVGLLGKNAVLIVEFA---VL 951

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFGIV 806
              +   +  D   +         + TS A    ++P+ +  G   I   +       G++
Sbjct: 952  KRSQGATILDAAIEGAKVRFRPILMTSFAFIAGLIPLLLASGAGAIGNHTIGASALGGML 1011

Query: 807  VAASSSIFIAAPILLFIY 824
                  + I   +     
Sbjct: 1012 FGTIFGVIIVPGLYFIFG 1029


>gi|323161800|gb|EFZ47679.1| multidrug resistance protein mdtC [Escherichia coli E128010]
 gi|323172668|gb|EFZ58302.1| multidrug resistance protein mdtC [Escherichia coli LT-68]
 gi|324119105|gb|EGC12994.1| AcrB/AcrD/AcrF family protein [Escherichia coli E1167]
          Length = 1025

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|301309767|ref|ZP_07215706.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           20_3]
 gi|300831341|gb|EFK61972.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           20_3]
          Length = 1054

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 72/634 (11%), Positives = 168/634 (26%), Gaps = 42/634 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPVDQYPQITPPV-------------VKISATYPGASALTVSQAVATPIEQELNGTPGMI 77

Query: 88  VFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +    IT++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMQSSSSNSGSLNITVTFDVSADADLAAVEIQNRVKLAESRLPAEVIQNGITIEKQAPSQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++      D      I  S       +D +       +          +     P RL  
Sbjct: 138 LMTLSLMSDDPKFDEIYLSNFATINVLDVLRRIPGVGRVSNIGSRYYGMQIWVYPDRLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           +  T   +       N        G + + D D                L          
Sbjct: 198 MGLTVKDLQDALKDQNRESAAGELGKQPVLDVDVT--------------LPITAPGRLST 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +    +       +                +    
Sbjct: 244 VKEFEDIVVRANPDGSIVRMSDVARVSLEASSYSTESGINGKNAAILGIYMLPGANALEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
                     +                      S      T      LV++V+F+ +   
Sbjct: 304 ATKVKEAMKDISKNFPEGLEYNFPFDMTEYISQSVHEVYKTLFEALFLVVLVVFLSLQNW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN-R 443
           +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +      
Sbjct: 364 RAALIPTIAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGIVVDDAIVVVENVERIMAE 423

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
           +  +   +           +  +++      V + F G   G   R F++T+ +S+L+S 
Sbjct: 424 ERVTAREATHKAMRELSGALIATSMVLAAVFVPVSFLGGITGQLYRQFSVTIVVSVLLST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA------IQFMRARFWGVGISI 554
             A+++  AM   I+R    K   I      +L            I     R    G  +
Sbjct: 484 VVALTLSPAMCAIILRPSHKKKAFIFRKINLWLAKGNKKYTKLLRISIANPRRILAGFGM 543

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
           +     +            + +G   + +       L   R+  +               
Sbjct: 544 VLVAIFVLNRVLPTSFIPEEDQGFFTVELEMPEGTTLERTRAVTDRAIEFLDHHPAVAYV 603

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +N          +    T  + +   +  +   +
Sbjct: 604 QNVTGSSPRVGTNQGRATLTVILKPWEERKSSGM 637



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 59/147 (40%), Gaps = 12/147 (8%)

Query: 689  KWYFALGAITTLILDITKTLGFF---ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             W   +  + +L      TLG +    + G+E ++     ++TLIG +  + +++ +  +
Sbjct: 889  SWIVPIAVLLSLP---VATLGAYLGIWVTGLENDIYFQIGLVTLIGLAAKNAILIVEFAK 945

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
                     +        +        + TS+A  + +LPM +    G +   S    + 
Sbjct: 946  ---VQVDNGVDVVKAAIHAAQMRFRPILMTSLAFVLGMLPMVLASGPGSASRHSIGTGVF 1002

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
            FG++VA +  I +     + IY  + K
Sbjct: 1003 FGMLVAITVGIVLVPFFFVLIYKIKGK 1029



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 5/115 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL     + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +     
Sbjct: 363 WRAALIPTIAVPISLIGTFGFMLIFGFSLNMLTLLGLILAIGIVVDDAIVVVENV--ERI 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPM 801
           +    ++ R+   K++ E  G  + TSM      +P+  + G  G +   F++ +
Sbjct: 421 MAEERVTAREATHKAMRELSGALIATSMVLAAVFVPVSFLGGITGQLYRQFSVTI 475


>gi|261340519|ref|ZP_05968377.1| multidrug resistance protein MdtC [Enterobacter cancerogenus ATCC
           35316]
 gi|288317614|gb|EFC56552.1| multidrug resistance protein MdtC [Enterobacter cancerogenus ATCC
           35316]
          Length = 1025

 Score =  154 bits (388), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 73/651 (11%), Positives = 174/651 (26%), Gaps = 44/651 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISLAITLCGVL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRSAISNANVRKPQGAIEDSSHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLSDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+ +       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVNSIRARLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLFISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENISRHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++          + K      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVISLTLTPMMCGWMLKRSKPHTQPRRKGFGRVLMAIQEG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRIVGLVLVGTIALNVWMYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +R  L+         +  D    F    +   G      +  +   +   +
Sbjct: 575 MRGKLQDFMKIIREDKAVDNVTGFTGGSRVNSGMMFITLKSRDERNETAQQ 625



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   + + + + ++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TVSFNLPTGSSLSEASDAINRTMIQLGVPSTVRGSFAGTAQVFQDTMNSQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    LFG  F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGVLYESYVHPLTILSTLPSAGVGALLALELFGAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D      +     ++  + I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALDAQRNGN--LTPEEAIFQACLLRFRPIMMTTLAALFGALPLVISGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 8/281 (2%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +        + T+           + +       V LS V S  +S+Q    +      
Sbjct: 219 AIEDSSHRWQIQTNDELKTAAEYQPLIIHYNNGAAVRLSDVASVTDSVQDVRNAGMTNAK 278

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               L+  +    + +     +     ++ E +P +             R  + +    +
Sbjct: 279 PAILLMIRKLPEANIIQTVNSIRARLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTL 338

Query: 674 IISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            IS   +++ +++  +     L     + + +  T     L G   N  ++ A+    G+
Sbjct: 339 FISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVW 789
            V+D +VV + +    +     +       +   E     +  S++        L M   
Sbjct: 399 VVDDAIVVLENI---SRHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGL 455

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G ++  FA+ ++  I ++   S+    P++      R+K 
Sbjct: 456 PGRLLREFAVTLSVAIGISLVISL-TLTPMMCGWMLKRSKP 495


>gi|323187845|gb|EFZ73142.1| multidrug resistance protein mdtC [Escherichia coli RN587/1]
          Length = 1019

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 169/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K   +      R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGVLEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|290508617|ref|ZP_06547988.1| RND superfamily, multidrug transporter MdtC [Klebsiella sp. 1_1_55]
 gi|289778011|gb|EFD86008.1| RND superfamily, multidrug transporter MdtC [Klebsiella sp. 1_1_55]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/667 (10%), Positives = 180/667 (26%), Gaps = 44/667 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISLAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  + +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVDLNPQALFNQGVSLDAVRTAISDANVRKPQGALEDSAHRWQVQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                       +                 +   +  V +  +
Sbjct: 235 LKTAAD--------------------YQPLIVHYQNGAAVRLGDVATVSDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQQTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENISRHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++       +  + +      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLAVSLTLTPMMCGWLLKSGKPHQPTRNRGFGRLLVAVQGG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +      +R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLRHSRLTGLVVLGTIALSVWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R  L+            D    F    +   G      +  +   +   +++     + 
Sbjct: 575 MRGKLQDFMKIIREDPAVDNVTGFTGGSRVNSGMMFITLKSRDQRHETAQQVIDRLRKKL 634

Query: 654 TEIVGPK 660
               G  
Sbjct: 635 ANEPGAN 641



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 7/216 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQQTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---SRHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FA+ ++  I ++ + S+    P++        K 
Sbjct: 461 REFAVTLSVAIGISLAVSL-TLTPMMCGWLLKSGKP 495



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   + + + +T++   S+++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TISFNLPTGRSLSEASDAINRTMTQLGVPSSVRGSFAGTAQVFQQTMNAQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    +F   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGMLYESYVHPLTILSTLPSAGVGALLALEIFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++  + I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRTGN--LAPEEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|148654151|ref|YP_001281244.1| acriflavin resistance protein [Psychrobacter sp. PRwf-1]
 gi|148573235|gb|ABQ95294.1| acriflavin resistance protein [Psychrobacter sp. PRwf-1]
          Length = 1027

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/602 (12%), Positives = 175/602 (29%), Gaps = 40/602 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N    ++L+ ++   G+         +  + +FP       +           + L   
Sbjct: 11  KNPLVAILLFVLLTLGGIY-----GFMKMKVQQFPDIDLPAVV---------VTVTLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S ++       +++     I   F   +  +   D V   +  
Sbjct: 57  APSQLENDIAKKIENKLSSIEGVKHMRTTLQTGAATIATEFVLEKDIQEAVDDVRSAVGE 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L       ++   T   +  V      + +     + S  +      ++   +   
Sbjct: 117 VQGDLPAAANDPIITKVTTAGLPAVTYTVAANGISPE--DLSWFVDDIINKRLSDIKGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++  E DP  L  L     ++S           G    V   + +     
Sbjct: 175 TVSRVGGLEREISVEVDPISLNALRLPITQLSEQITGLQQDSSGGESEVGNSKQNIRVLG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   E++ + +   T                           +   I    A V    
Sbjct: 235 GIQTARELNDLQIALPT--------------------GGTQALGSMATITDGTADVSSIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +     +     S    ++      A L+       +                 
Sbjct: 275 KLNGTTVVAFNVTRSRGASEVEVVKLVDAELARLQKDMPNYTITK-VFDRATPIDEDYQA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L ++V+F+ +   +  +VA  ++ L+VI T   +     +L L S+  + 
Sbjct: 334 SLRMLIEGGLLAVVVVFLFLRNVRATIVAAVALPLSVIPTFLGMYFFDFSLNLISLLALS 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 394 LVVGVLVDDAIVEVENIMRHLRMGKTPYQAAMEAADEIGLAVVATTFTLIAVFLPTAFMS 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F  T  ++I  S+  A  I   M  +I+R +K  +     + + +L     
Sbjct: 454 GIVGQFFRQFGWTAAIAIFASLMVARLITPMMAAYILRPEKHHTEKSGRVMQMYLKAVSW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +           +    S+  + LL T  +      +  I + +  +  ++ +   + +
Sbjct: 514 TLHHRWITLGTTLVLFFASLTLVKLLPTTFIPENDIDQTRIGIELTPDATLEDTSRITQM 573

Query: 599 ES 600
             
Sbjct: 574 VE 575



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 81/256 (31%), Gaps = 10/256 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           Q+ +       L  + +  +         +            + +    V   ++++   
Sbjct: 246 QIALPTGGTQALGSMATITDGTADVSSIAKLNGTTVVAFNVTRSRGASEVEVVKLVDAEL 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ + +P  TI         I  +      + +    +A+++           + A   
Sbjct: 306 ARLQKDMPNYTITKVFDRATPIDEDYQASLRMLIEGGLLAVVVVFLFLRNVRATIVAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T      F    NL ++ A+  ++G  V+D +V  + +   M+      +   
Sbjct: 366 LPLSVIPTFLGMYFFDFSLNLISLLALSLVVGVLVDDAIVEVENI---MRHLRMGKTPYQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     V T+       LP A      G     F    A  I     +S+ +A
Sbjct: 423 AAMEAADEIGLAVVATTFTLIAVFLPTAFMSGIVGQFFRQFGWTAAIAI----FASLMVA 478

Query: 817 APILLFIYDWRAKNAR 832
             I   +  +  +  +
Sbjct: 479 RLITPMMAAYILRPEK 494



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/240 (11%), Positives = 76/240 (31%), Gaps = 9/240 (3%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + V    +       S       +  +       G  +            +        +
Sbjct: 775  ARVAEVADLAFGTGPSEILRFDRERAITINVQVAGGELGGLVKAVKALPSLQPGSIPDGV 834

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
               +    +   EL    ++ + +  I +   + + F K       +  L L I      
Sbjct: 835  SLIDQGQAESMAELFGGFVIAMSVGIICIFGVLILLFGKVLQPFTILMALPLSIGGAFVG 894

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             A+     ++ ++   + L+G +  + +++ D     +      ++  D +  +  +   
Sbjct: 895  LAITNSSLSMPSMIGFIMLMGIATKNSILLVD--YAILAEREHGLNRFDALLDACRKRAQ 952

Query: 771  RSVYTSMAAFISVLPMAVWGGSV-----IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              + T++A    ++P+ V+G            A  +  G+V +   S+ +   +  F+ D
Sbjct: 953  PIIMTTIAMGAGMMPL-VFGWGSADPTFRQPMAAAVLGGLVTSTLLSLIVIPMVYTFMDD 1011


>gi|78779254|ref|YP_397366.1| preprotein translocase subunit SecD [Prochlorococcus marinus str.
           MIT 9312]
 gi|78712753|gb|ABB49930.1| protein-export membrane protein SecD [Prochlorococcus marinus str.
           MIT 9312]
          Length = 489

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 127/489 (25%), Positives = 218/489 (44%), Gaps = 48/489 (9%)

Query: 43  RISLGLDLRGGSHLVLEV--DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKIT 99
            + LGLDL+GGS L L++  +E       L+  +  +   +   G+   +++    +++ 
Sbjct: 26  PLQLGLDLQGGSQLTLQIIKEEGKVTRDELEAVNSVIDKRVNNLGVSESNLQTLGGDQLI 85

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           L     +     +  +                                +Q         +
Sbjct: 86  LELPGEQNPLVASRVLGKTALLEFR-----------------------TQKEGTSTDLKS 122

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           ++     I++ I+Q   +E                   D + L+ +     ++       
Sbjct: 123 LQLQRFSIKELIEQYSFAEKNQN---------------DDNFLKVIQDNLKEIEQELNYS 167

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
           + +   +   +   +  D     +  K ++SG  L  A    +   +   V ++F   G 
Sbjct: 168 STNNDLYGKLIEIKKYVDKEITNLFIKTDLSGKDLINAGRRQEQTNNNWEVLLTFSNSGG 227

Query: 280 RRFFEVTRDNIGKPL-------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
            +F E+T+   G             +    +     +  I  G A ISGNF+ E A  L 
Sbjct: 228 EKFAEITKSIAGTNQLLAIILDGESISEASVGNQFASTGITGGSATISGNFSAENARELE 287

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
             L+ GSLP+ + IVE   +GA LGS +I K   A ++GL+ + +FMI  Y   G V+  
Sbjct: 288 VQLKGGSLPLPIEIVETNTIGALLGSKNILKSLYAAISGLIFVGIFMIFNYRILGFVSVL 347

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           S+ L     LAL SL+  TLTLP I+G++L IG+AVD+NIL+ ERIREE     ++  S+
Sbjct: 348 SLVLYGFFNLALYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYDGNTLTRSI 407

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           D GF RA S+I D +IT L++  VLF  G   V+GFA T+G+ +LIS+FT+++  + ++ 
Sbjct: 408 DSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILR 467

Query: 513 FIIRYKKMK 521
           F   Y+ ++
Sbjct: 468 FFTTYQSLR 476



 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 99/259 (38%), Gaps = 4/259 (1%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +  G     +  +      ++   L+   I + S  N               G+  A+  
Sbjct: 224 NSGGEKFAEITKSIAGTNQLLAIILDGESISEASVGNQFASTGITGGSATISGNFSAENA 283

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
               V+ K   +     I  T  +G  +  + I K +   I   I + I++   ++    
Sbjct: 284 RELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSLYAAISGLIFVGIFMIFNYRIL-G 342

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             ++ +L+L     L  ++L  +   L  ++ ++  IG +V+  +++++R+R+ +     
Sbjct: 343 FVSVLSLVLYGFFNLALYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYD--- 399

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             +    ID          V   +   +S   + + G + +  FA  +  G++++  +S+
Sbjct: 400 GNTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSL 459

Query: 814 FIAAPILLFIYDWRAKNAR 832
             +  IL F   +++   +
Sbjct: 460 NCSKTILRFFTTYQSLRQK 478


>gi|323272185|gb|EGA55598.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 678

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|320191757|gb|EFW66405.1| Multidrug transporter MdtC [Escherichia coli O157:H7 str. EC1212]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSIAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGMVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSIAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|315285693|gb|EFU45133.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 110-3]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 169/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++  +    L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRVRLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRVRLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALQLFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++     +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVYFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|86158962|ref|YP_465747.1| protein-export membrane protein SecD [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85775473|gb|ABC82310.1| protein-export membrane protein SecD [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 613

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 220/465 (47%), Gaps = 26/465 (5%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
              ++     +R+ + K G+    ++    N+I +     +  E   + +    Q     
Sbjct: 162 EKAVKQAEKVIRNRVDKWGVTEPDIKTKANNQIQVQLPGFKDPEKAKELLGRTAQLEFKI 221

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
            + +                 +      Q+     ++    +          E      G
Sbjct: 222 ADDENP---------------VLDQVRTQLPQCQGDRQGLSLPLPESGCWTVEPVELPSG 266

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
             R    +         + +      +                G   ++ +    YL+  
Sbjct: 267 GSRAATMVAANTRTELEKVITEKLNPLLD-PQKNVVGIGEGQVGQGPIKTTYYRTYLLRA 325

Query: 246 KVEISGIHLNGATANFDP----KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           K E++G ++  A    D     +  +PVV       GAR   ++T +N+ + +A VLD +
Sbjct: 326 KTELTGDYIADAAVAIDQSDTLQRGRPVVSFKMSPEGARLMDKLTSENMRRRMATVLDDK 385

Query: 302 VLTAPVINQ-----AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           V TAP I          +  +  +     + A  +A +L+AG+LP  + I EER VGA L
Sbjct: 386 VETAPYIQGRISSNGQITLGSGRNQQDMFDEANGIALVLKAGALPAPVTITEERTVGATL 445

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G + + KGT A + GL L+V+FM+V Y   GLVAD ++ LN +L LA++S++G TLTLP 
Sbjct: 446 GPELVRKGTLAALVGLALVVVFMVVYYRGTGLVADVALALNGLLVLAVMSMIGTTLTLPG 505

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG VL +G+AVD+N+L+NERIREE R  ++V  S+ +G+ R + TI DS++T L+A VV
Sbjct: 506 IAGFVLTLGMAVDANVLINERIREEMRAGRNVRQSVQLGYDRVFWTIVDSHVTTLVAGVV 565

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           LF +G G +RGFA+T+ + ++ SMFT+I + R +M +  R+   +
Sbjct: 566 LFQYGSGPIRGFAVTLIIGLVASMFTSIVVTRVIMEYFTRHDTAR 610



 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 89/230 (38%), Gaps = 4/230 (1%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L+         Q        +     +    +        +  K   +    TI    
Sbjct: 380 TVLDDKVETAPYIQGRISSNGQITLGSGRNQQDMFDEANGIALVLKAGALPAPVTITEER 439

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  +  EL+RKG +  ++    +++++ + ++    L A   L L+    L   ++ G
Sbjct: 440 TVGATLGPELVRKGTLAALVGLALVVVFMVVYYR-GTGLVADVALALNGLLVLAVMSMIG 498

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A  +  +G +V+  V++ +R+R+ M+      + R  +    +      V +
Sbjct: 499 TTLTLPGIAGFVLTLGMAVDANVLINERIREEMRA---GRNVRQSVQLGYDRVFWTIVDS 555

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   ++ + +  +G   I  FA+ +  G+V +  +SI +   I+ +   
Sbjct: 556 HVTTLVAGVVLFQYGSGPIRGFAVTLIIGLVASMFTSIVVTRVIMEYFTR 605



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/250 (20%), Positives = 100/250 (40%), Gaps = 20/250 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLP-QSMLDR---------FPSAMPKNR--ISLGLD 49
           R+  W V L   +  + +   +P++   +   D+          P   P  +  ++LGLD
Sbjct: 3   RSWYWRVALVVAVAILSIYQLVPSWFYFKLPPDQRNTEAYDTSVPGWAPDAKHHLNLGLD 62

Query: 50  LRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE 109
           L+GG  L + VD D  V   +   +DE+  FLK + +     + +     +  + +   E
Sbjct: 63  LQGGILLSMGVDVDRAVKTKVARRADEIGEFLKGKNVAFTGTKVVGGGAQVEVSAANPGE 122

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
                +                        +  +      + +      A++Q+ ++IR 
Sbjct: 123 VKDAVLGSTGYSEEMYSPGGAP--------DGAVRFAFKDSVLRDFREKAVKQAEKVIRN 174

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
           R+D+ G++E  I+   +++I +QLPG +DP + ++LLG TA++ F      N     +  
Sbjct: 175 RVDKWGVTEPDIKTKANNQIQVQLPGFKDPEKAKELLGRTAQLEFKIADDENPVLDQVRT 234

Query: 230 VRFLRDSDGN 239
                  D  
Sbjct: 235 QLPQCQGDRQ 244


>gi|26248450|ref|NP_754490.1| multidrug efflux system subunit MdtC [Escherichia coli CFT073]
 gi|300978920|ref|ZP_07174433.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 45-1]
 gi|301048802|ref|ZP_07195800.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 185-1]
 gi|59798413|sp|Q8FG03|MDTC_ECOL6 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|26108855|gb|AAN81058.1|AE016763_17 Hypothetical protein yegO [Escherichia coli CFT073]
 gi|222033841|emb|CAP76582.1| Multidrug resistance protein mdtC [Escherichia coli LF82]
 gi|300299387|gb|EFJ55772.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 185-1]
 gi|300409553|gb|EFJ93091.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 45-1]
 gi|312946698|gb|ADR27525.1| multidrug efflux system subunit MdtC [Escherichia coli O83:H1 str.
           NRG 857C]
 gi|315294403|gb|EFU53751.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 153-1]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G  +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGAVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|193062805|ref|ZP_03043898.1| multidrug resistance protein MdtC [Escherichia coli E22]
 gi|260844686|ref|YP_003222464.1| multidrug efflux system, subunit C [Escherichia coli O103:H2 str.
           12009]
 gi|192931448|gb|EDV84049.1| multidrug resistance protein MdtC [Escherichia coli E22]
 gi|257759833|dbj|BAI31330.1| multidrug efflux system, subunit C [Escherichia coli O103:H2 str.
           12009]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 76/607 (12%), Positives = 169/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K                   
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALED------------ 222

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G H      N + KT      +                 +   +  V +  +
Sbjct: 223 --------GTHRWQIQTNDELKTADEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRSSLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+M+      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRMRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRSSLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|311278932|ref|YP_003941163.1| acriflavin resistance protein [Enterobacter cloacae SCF1]
 gi|308748127|gb|ADO47879.1| acriflavin resistance protein [Enterobacter cloacae SCF1]
          Length = 1040

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/586 (10%), Positives = 159/586 (27%), Gaps = 42/586 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G++           +   P                    +     
Sbjct: 19  RPVATTLMMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VITLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMSSQSAGGASVVTLQFQLALSLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPGDLPNPPVYSKVNPADPPIMT-LAVTSSALPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +       N +                    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAITNANVNSAKGSLDGPA---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +   ++             +   I +       G  
Sbjct: 234 ----------RAITLSANDQMQSAEEYRNLVVAYQNGAPVRLGSVATIEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L +         V          S S  
Sbjct: 284 ANKQQAVVMNVQRQPGANIIATADSIRQMLPQLTSSLPKSVKVQVLSDRTTNIRASVSDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A +  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNVPATIIPGVAVPLSLVGTFAAMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FAIT+ ++ILIS   ++++   M   +       K+ +    +      +I 
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSHESLRKQNRFSRASERFFEQVIA 523

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
               +         + +S+  +  ++ ++    +  G        +
Sbjct: 524 AYGRLLARVLNHPWLTLSVALATLALSIMLWVFIPKGFFPIQDNGI 569



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NVPATIIPGVAVPLSLVGTFAAMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492


>gi|268589301|ref|ZP_06123522.1| multidrug RND efflux transporter, permease protein MdtB
           [Providencia rettgeri DSM 1131]
 gi|291315322|gb|EFE55775.1| multidrug RND efflux transporter, permease protein MdtB
           [Providencia rettgeri DSM 1131]
          Length = 1040

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/652 (11%), Positives = 163/652 (25%), Gaps = 43/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 18  RPVATTLFMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   E    +V   +   
Sbjct: 64  PDVMTSAVTAPLETQFGQMSGLKQMSSQSSGGASVITLMFQLTLPLEVAEQEVQAAINSA 123

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S L  D     +          VL+   +        +    I  +   +I        
Sbjct: 124 SSLLPSDLPYPPIYNKVNPADPPVLT-LAVTSDAMPLTQVQDIIETRIAQKISQVNGVGL 182

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +P  +      +  +       N +     F              
Sbjct: 183 VTLAGGQRPAVRVNLNPQAMAAKGLDSETIRLAINNANVNSAKGSFDGP----------- 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+      +                 I +       G  
Sbjct: 232 ---------TRAVTLSANDQMKSLDDYRQLIVAFQNGAPVRLGDIATIAQGAENAYLGAW 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +T   L   L           +          S +  
Sbjct: 283 ANNEQAIVINVQRQPGANVIETTDTIRTLLPELIESLPKSVNVDILTDRTSTIRASVNDV 342

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +  G   L+   ++ L+++ T A++   G ++   ++  + +
Sbjct: 343 QFELMLAIALVVMVIYLFLRNGIATLIPGIAVPLSLVGTFAVMYFCGFSVNNLTLMALTI 402

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K      +   G      TI     + +   + L F G 
Sbjct: 403 ATGFVVDDAIVVIENISRYLEKGDKPLVAALKGAGEIGFTIISLTFSLVAVLIPLLFMGD 462

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLI 534
             G   R FAIT+ ++ILIS   ++++   M   +             +         + 
Sbjct: 463 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARLLKPESQHKHNRFELACERFFDRMVA 522

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              I ++ +    W      L ++    LL+          +    +         +S  
Sbjct: 523 GYAIWLKRILNHQWLTLSVALGTMVLTVLLYMWIPKGFFPLQDSGIIQGSIESRQSISFA 582

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +  ++      +   +             ++   R+   +K       
Sbjct: 583 AMAQKQQEVASKLLADPAVDNVTTYVGVDGSNPTLNNARLQITLKPLDERED 634



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 76/225 (33%), Gaps = 12/225 (5%)

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            Q  + ++          + +  Q           + ++  + E++          +   
Sbjct: 271 AQGAENAYLGAWANNEQAIVINVQRQPGANVIETTDTIRTLLPELIESLPKSVNVDILTD 330

Query: 661 ISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +  +          + + I+ + M+IY+++R      L     + L +  T       G
Sbjct: 331 RTSTIRASVNDVQFELMLAIALVVMVIYLFLRNGI-ATLIPGIAVPLSLVGTFAVMYFCG 389

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N   + A+    G+ V+D +VV + +    +             K   E     +  
Sbjct: 390 FSVNNLTLMALTIATGFVVDDAIVVIENI---SRYLEKGDKPLVAALKGAGEIGFTIISL 446

Query: 776 SMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
           + +    ++P+   G   G +   FAI +A  I+++A  S+ +  
Sbjct: 447 TFSLVAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTP 491



 Score = 45.5 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 6/278 (2%)

Query: 552  ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            +       S         +            +         V  S L ++Q G+      
Sbjct: 748  MVSTIYTQSNQYRVILEHDTQTRDGMDALNDIRLKGTDGAIVPLSTLVNIQEGNGPLAIN 807

Query: 612  DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
              ++   V   +   D  +    +  VK   ++I    +I              +   I 
Sbjct: 808  HLDQFPAVTFSFNVADGASLESAVNAVKLAESQIAMPKSITTQFQGATLAFEAALSSTIW 867

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +  + +AM I + I ++ +   +  ++TL       L    + G + ++ AV  ++ LI
Sbjct: 868  LIAAAIVAMYIVLGILYESFIHPITILSTLPTAGVGALLALMMAGKDLDVIAVIGIILLI 927

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G    + +++ D            +S  D I ++        + T+MAA +  LP+ +  
Sbjct: 928  GIVKKNAIMMID--FALAAEREQGMSPYDAIYQACLLRFRPILMTTMAALLGALPLMLST 985

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G  +     I M  G++++   ++F    I L    
Sbjct: 986  GVGAELRQPLGICMVGGLIMSQILTLFTTPVIYLLFDR 1023


>gi|262394792|ref|YP_003286646.1| RND multidrug efflux transporter [Vibrio sp. Ex25]
 gi|262338386|gb|ACY52181.1| RND multidrug efflux transporter [Vibrio sp. Ex25]
          Length = 1037

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 62/651 (9%), Positives = 177/651 (27%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVAALVLSMLLCVFGFVS-----FTKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSSSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +    R  +D+  +     
Sbjct: 115 AQRSLPDEADDPIVYKNNGSGQASLYINLSSAE--MDRTQLTDYAERVLMDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SIDLSGGLYKVMYVKLKPELMAGRSVTASDITSALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +          +     ++           
Sbjct: 219 -----VRNDSTVMSVRTARSYNTPEDFQYLVIKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++         S   
Sbjct: 274 KSDGVVNVSLGVVPQSDANPLEVAKLVRAEVDNIQKFLPEGTRLAIDYDATVFIERSIEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   I++     +     + R F   +  
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNRFNQVVDRLFSKLESG 513

Query: 539 AIQFMR--ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               ++   +       ++ +         + +   +  +    +     R  D +    
Sbjct: 514 YRSLLKGALKIRWAAPLVILACLGGSYFLMNQVPAQLTPQEDRGVMFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MSANMDIVEDRLMPLLGQGYLKSFSIQTPAFGGQAGDQTGFVIMILEDWNE 624



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L +          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARSYNTPEDFQYLVIKRASDNTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V L   P        V ++V+ ++  I           +    +  + R        +
Sbjct: 279 VNVSLGVVPQSDANPLEVAKLVRAEVDNIQKFLPEGTRLAIDYDATVFIERSIEEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNR 498



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 49/143 (34%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        + G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMFTVPMGVFGGFLGLVVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    + F   +  +    L   + T+       +P+ V    G     +    + FG+
Sbjct: 931  QLRDRGVEFEKAVIDAAARRLRPILMTAFTTLAGAIPLIVSTGAGYESRIAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
              A   ++F+   +   I     
Sbjct: 991  GFATLVTLFVIPAMYRLISAKTQ 1013


>gi|209885606|ref|YP_002289463.1| multidrug resistance protein MdtB; Multidrug transporter mdtB
           [Oligotropha carboxidovorans OM5]
 gi|209873802|gb|ACI93598.1| multidrug resistance protein MdtB; Multidrug transporter mdtB
           [Oligotropha carboxidovorans OM5]
          Length = 1048

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/584 (11%), Positives = 161/584 (27%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +GL+       P   +   P                     L   
Sbjct: 11  RFPIATSLLMVGVLFVGLVA-----YPALPIAPLPQVDFPTIQ---------VSASLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       IT+ F  +R  +  A+ V   +  
Sbjct: 57  SPETMASSVAQPLERQFAQIPGVAQLTSTSSLGSTSITIQFDLNRAIDGAANDVQAAINA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + +L  +              + ++   +        IE +  I  +   Q+       
Sbjct: 117 ASGQLPKNLPSPPTYRKVNPADAPIMI-LSATSDTMPLIEVNDAIDSKLAQQLSQITGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L   +    +  + DP++L         +                  +    +     
Sbjct: 176 QVLIGGQQKPAIRVQIDPAKLVAKGLGLEDVRLQLAQTTVDSPKGNIDGKTRSYTIYAND 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                      D+                        +    
Sbjct: 236 QLPSSKD--------------------WNDVIIAYRNGGPLRVRDIGQAIAGPEDMKQAA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   +   +   T++        L  G  P     +          +   
Sbjct: 276 WANGKRGVFLVVFKQPGANVIETVDKIKAQLPRLEKGLPPAVNVTIMSDRTQTIRAAVED 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ L ++   AL+ ++G TL   S+  + 
Sbjct: 336 VQFTLLLTIALVVMVIFLFLRNFWATVIPSITVPLALLGACALMWVVGYTLDNLSLMALT 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I     K +  + +   G      TI   +++ +   + L   G
Sbjct: 396 IAVGFVVDDAIVMLENISRYVEKGEDPYEAALKGAREIGFTIVSISVSLVAVLIPLLLMG 455

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ ++I +SM  ++++   M    ++  +              + D +
Sbjct: 456 GIIGRLFREFAVTLAMTIFVSMIVSLTLTPMMASRFLQPHREGQQHGKLYQWSERMFDGM 515

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              + R     +       +     +    + +    KG     
Sbjct: 516 LHAYERGLDLVMRWRFTTLMVFFATVALSVILFLAIPKGFFPQQ 559



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 93/261 (35%), Gaps = 12/261 (4%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +T   N  +         ++A R      VR   +++   +   Q         V L   
Sbjct: 229 YTIYANDQLPSSKDWNDVIIAYRNGGPLRVRDIGQAIAGPEDMKQAAWANGKRGVFLVVF 288

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIA 679
                     ++ +K ++  +           +    ++ +       +  + + I+ + 
Sbjct: 289 KQPGANVIETVDKIKAQLPRLEKGLPPAVNVTIMSDRTQTIRAAVEDVQFTLLLTIALVV 348

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           M+I++++R  W   +    T+ L +        + G   +  ++ A+   +G+ V+D +V
Sbjct: 349 MVIFLFLRNFW-ATVIPSITVPLALLGACALMWVVGYTLDNLSLMALTIAVGFVVDDAIV 407

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           + + +    +         +   K   E     V  S++    ++P+ + GG +      
Sbjct: 408 MLENI---SRYVEKGEDPYEAALKGAREIGFTIVSISVSLVAVLIPLLLMGGIIGRLFRE 464

Query: 797 FAIPMAFGIVVAASSSIFIAA 817
           FA+ +A  I V+   S+ +  
Sbjct: 465 FAVTLAMTIFVSMIVSLTLTP 485



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 97/249 (38%), Gaps = 7/249 (2%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + + +    +   + + +                +   + + +     VA  +  + V+K
Sbjct: 772  IYIKSPNTGEQVPLSTFVRWTTDPVRPLSISHQGQFPAITISFNLAQGVALGQATDAVQK 831

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + E+    T+  +     +  ++ +    + +  + I + + + I ++ +   L  ++T
Sbjct: 832  AMEELGAPPTLNGSFQGTAQAFQQSLGTIPLLIFAALIVVYLILGILYESYIHPLTILST 891

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    LFG +F+L A+  ++ LIG    + +++ D     +      +S  +
Sbjct: 892  LPSAGVGALAILMLFGFDFSLIALIGIVLLIGIVKKNGIMMVDFA---IVAEREGLSPEE 948

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I K+        + T+MAA +  +P+ +    G  +       M  G++V+   ++F  
Sbjct: 949  SIRKAALLRFRPIMMTTMAALLGGVPLMLGHGTGSEIRQPLGYAMVGGLLVSQMLTLFTT 1008

Query: 817  APILLFIYD 825
              I L++  
Sbjct: 1009 PVIYLYLDR 1017


>gi|15832138|ref|NP_310911.1| multidrug efflux system subunit MdtC [Escherichia coli O157:H7 str.
           Sakai]
 gi|168750411|ref|ZP_02775433.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757978|ref|ZP_02782985.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761822|ref|ZP_02786829.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769833|ref|ZP_02794840.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775472|ref|ZP_02800479.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782363|ref|ZP_02807370.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788749|ref|ZP_02813756.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC869]
 gi|168799038|ref|ZP_02824045.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC508]
 gi|195938270|ref|ZP_03083652.1| multidrug efflux system subunit MdtC [Escherichia coli O157:H7 str.
           EC4024]
 gi|208805875|ref|ZP_03248212.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817106|ref|ZP_03258198.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821583|ref|ZP_03261903.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4042]
 gi|209398631|ref|YP_002271319.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329654|ref|ZP_03445733.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           TW14588]
 gi|254793861|ref|YP_003078698.1| multidrug efflux system subunit MdtC [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225074|ref|ZP_05939355.1| multidrug efflux system, subunit C [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261257580|ref|ZP_05950113.1| multidrug efflux system, subunit C [Escherichia coli O157:H7 str.
           FRIK966]
 gi|60390058|sp|Q7ACM1|MDTC_ECO57 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|226700688|sp|B5YUD4|MDTC_ECO5E RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|13362353|dbj|BAB36307.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|187769007|gb|EDU32851.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015400|gb|EDU53522.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000152|gb|EDU69138.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355144|gb|EDU73563.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361214|gb|EDU79633.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4486]
 gi|189367775|gb|EDU86191.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4501]
 gi|189371611|gb|EDU90027.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC869]
 gi|189378473|gb|EDU96889.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC508]
 gi|208725676|gb|EDZ75277.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730725|gb|EDZ79415.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741706|gb|EDZ89388.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160031|gb|ACI37464.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           EC4115]
 gi|209747954|gb|ACI72284.1| hypothetical protein ECs2884 [Escherichia coli]
 gi|209747956|gb|ACI72285.1| hypothetical protein ECs2884 [Escherichia coli]
 gi|209747958|gb|ACI72286.1| hypothetical protein ECs2884 [Escherichia coli]
 gi|217317422|gb|EEC25851.1| multidrug resistance protein MdtC [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593261|gb|ACT72622.1| multidrug efflux system, subunit C [Escherichia coli O157:H7 str.
           TW14359]
 gi|326338433|gb|EGD62261.1| Multidrug transporter MdtC [Escherichia coli O157:H7 str. 1044]
 gi|326347044|gb|EGD70777.1| Multidrug transporter MdtC [Escherichia coli O157:H7 str. 1125]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGMVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|294673088|ref|YP_003573704.1| multidrug resistance protein, AcrB/AcrD family [Prevotella
           ruminicola 23]
 gi|294472385|gb|ADE81774.1| multidrug resistance protein, AcrB/AcrD family [Prevotella
           ruminicola 23]
          Length = 1502

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/696 (10%), Positives = 183/696 (26%), Gaps = 47/696 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   L  ++   G++           +++FP+  P              +       
Sbjct: 9   RPIFACALSVLVLLAGIV-----GYINLPVEQFPNVAPPVVT---------INTEYTGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +E  + ++       S        ++++F      +    +V   ++ 
Sbjct: 55  AEAVMKSVVTPIEEAVNGVEGMEYITSSSTSSGIATVSVTFRPGTDPDLAQIRVKNRVEE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +    E++  + +               +         ++       
Sbjct: 115 AKGYLPAEVLNIGVQVEKEEQGMLRIIALECPDNRYDNAFITNYFNINVQPRLQRIAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +        DP  +         +       N        G            
Sbjct: 175 NIQLMGNVYSM-RIWMDPKMMALYQLNPEDIIKALEGQNVEAAIGTLGE----------- 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +  G +          +  +   DI     G           +           
Sbjct: 223 ------DSKGTYQYTLVYRGRLENPQDFEDIVLKTDGFNDLHLKDVARVELGTVTYACDS 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            + +     AI +     +          L   L           V          S + 
Sbjct: 277 WVNSHNGTIAIITPATGANAQQVNHEIDRLMTELEPKLPAGLEFKVLLDTNDFLDASMNA 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   SI ++++ T A + ++G TL L ++  +V
Sbjct: 337 VYKTLFEALLLVILVVLLFLQNWRATIIPSISIIVSLVGTFAFMYMVGFTLNLITLFALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG  VD  I+V E ++E+      +   +         + I  + I  +   +   F 
Sbjct: 397 LVIGTVVDDAIVVVEAVQEKLEDPAATAKNATIQAMHNISTAIITTTIVFMCVFIPAAFM 456

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM----------KSIDINP 527
           GG +    R F +TM +++ IS F A+++  A+   +++ +            +      
Sbjct: 457 GGLSGAYYRQFGLTMAVAVAISTFCALTLCPALCALLMKPRSPEGGEAQSWSVRFRRAYN 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   L+           R   +   +      +     +    G+       +  +   
Sbjct: 517 KAFDALLGKYSRAMGWFIRRRWLVGVLTAVSIVLLAWMLYSTPTGLVPDEDTGIVFVDIT 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               S +    ++++      +N    +       +           L M + K  +   
Sbjct: 577 TPSGSTLAQTQKTVKEMSEIIENDPDVRATGSVAGWNILGGEGPNTGLVMGRLKHWDDRQ 636

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
                   I     +     K     +     +  Y
Sbjct: 637 DDGHDIFSIYDRIEAATHQVKSGSMFVFLLPTVFGY 672



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 56/127 (44%), Gaps = 5/127 (3%)

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T  F  + G   NL  + A++ +IG  V+D +VV + +++  KL   + + ++   +
Sbjct: 373 LVGTFAFMYMVGFTLNLITLFALVLVIGTVVDDAIVVVEAVQE--KLEDPAATAKNATIQ 430

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
           +++      + T++      +P A  GG        F + MA  + ++   ++ +   + 
Sbjct: 431 AMHNISTAIITTTIVFMCVFIPAAFMGGLSGAYYRQFGLTMAVAVAISTFCALTLCPALC 490

Query: 821 LFIYDWR 827
             +   R
Sbjct: 491 ALLMKPR 497



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/421 (8%), Positives = 113/421 (26%), Gaps = 41/421 (9%)

Query: 434  VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
              +   +       +F S+      A   +   ++   +   V  +    +V  +    G
Sbjct: 628  RLKHWDDRQDDGHDIF-SIYDRIEAATHQVKSGSMFVFLLPTVFGYSYSNSVELYVEDYG 686

Query: 494  LSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
               +  +     +  + M  +    +++ +       +      +     +         
Sbjct: 687  GGSITKLKE---VSDSFMKALEARPEIEEVYSPYEVNYPQYTVTVNASLCKRYGIEPASV 743

Query: 554  ILFSICSICLLFTHGLN-----------------YGIDFKGGIQLGVLANRPVDLSVVRS 596
            +      I   +    N                    D    I +         ++ + +
Sbjct: 744  LSVLNGYIGGNYASQFNSFGKLYHVMLQSDPKLRMNKDALNNILVVTEKGAYTPITELIT 803

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              ++  +  I+  N     +  +              V E+    + +            
Sbjct: 804  LKKTYGLQSINRFNLFQGISVELTPAEGYTSGDVIDVVSEVSAATLPQGYGYEYTGTARE 863

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                 S            IS + + I +   ++     +  + ++   +  +     L  
Sbjct: 864  EAASSS-----STAWVFAISLLLVFIVLCCLYESLLIPMAVMFSVPFGLVGSFLLINLAE 918

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVY----DRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +E N+     ++ LIG      +++     +R R+        ++       +    L  
Sbjct: 919  LENNIYMQVGIIMLIGLLAKTAILITEYACERRRE-------GMTIVAAALDAAKARLRP 971

Query: 772  SVYTSMAAFISVLPMAVW-GGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRA 828
             + T++   + ++PM    G   +G+  + +    G++V   + +       +       
Sbjct: 972  ILMTALTLIVGLMPMIFERGAGAMGNVTLGLCVVGGMLVGTLALLLFVPVFFILFQTMEE 1031

Query: 829  K 829
            +
Sbjct: 1032 R 1032


>gi|256422042|ref|YP_003122695.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
 gi|256036950|gb|ACU60494.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
          Length = 1058

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/573 (11%), Positives = 145/573 (25%), Gaps = 46/573 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  M+  +GL+  +        + +FP   P               + +  + 
Sbjct: 8   KPVIATVVSIMLVILGLVGLM-----DLPIQQFPDIAPPV-------------VQVSANY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     +    I++ F      +  A  V  
Sbjct: 50  PGANAETMVRAVAPPLEEAINGVENMTYMSSTSANDGTLIISVYFKLGTDPDQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIGI 176
            +      L  +  +  + T   +   I+      +      A   +       I ++  
Sbjct: 110 RVSSATGLLPPEVVQAGINTQKVQNSLIMAINLMSENPQLYDATYLTNYAQINIIPELKR 169

Query: 177 SESTIQRLGSH-RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            +   Q           +    +P+++     T  ++       N       FG    R 
Sbjct: 170 IQGVGQVTFFGSNRDYSMRIWLNPAQMATYNITPTEVMTAVKSKNQEAAPGRFGESSNRS 229

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +                          K       I                 +     
Sbjct: 230 FEYVLKYAGK----------------YTKPEDYGNMIIRANADGSMLKLKDVAKVELGSY 273

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +                +                    P     +        
Sbjct: 274 TYNSLNTVNDKQSVLFQVIQLPGSNSREIQTKVAAFLKKAEKDFPPGIKQQILYNTKDML 333

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T      LV +V+++ +   +  L+   ++ + VI T   +S+ G ++ L 
Sbjct: 334 DQSIDQVEHTLLEAFILVFVVVYIFLQDFRSTLIPAIAVPVAVIGTFFFMSVFGFSINLL 393

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IG+ VD  I+V E +  +      S   +           I    +      
Sbjct: 394 TLFALVLAIGIVVDDAIVVVEAVHSKLEHRNISPRKATMSAMHEITGAIISITLVMAAVF 453

Query: 475 VVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F     G   R FA T+ ++I IS   A+++  A+   +++          P +  
Sbjct: 454 LPVGFMQGSAGVFYRQFAFTLAIAIAISALNALTLSPALCALLLKDVNHDH-QEKPANFK 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                     F       VG            L
Sbjct: 513 QRFFIAFNKGFENVTGKYVGAVKTMIRFKWVSL 545



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 90/243 (37%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  V          +      D +      +Q    +S      +    KK  +  
Sbjct: 258 SMLKLKDVAKVELGSYTYNSLNTVNDKQSVLFQVIQLPGSNSREIQTKVAAFLKKAEKDF 317

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P    Q        +  + I +    ++ + I + + ++I    +   L     + + + 
Sbjct: 318 PPGIKQQILYNTKDMLDQSIDQVEHTLLEAFILVFVVVYIFLQDFRSTLIPAIAVPVAVI 377

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F ++FG   NL  + A++  IG  V+D +VV + +    KL   +IS R     ++
Sbjct: 378 GTFFFMSVFGFSINLLTLFALVLAIGIVVDDAIVVVEAVH--SKLEHRNISPRKATMSAM 435

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +E  G  +  ++      LP+    GS       FA  +A  I ++A +++ ++  +   
Sbjct: 436 HEITGAIISITLVMAAVFLPVGFMQGSAGVFYRQFAFTLAIAIAISALNALTLSPALCAL 495

Query: 823 IYD 825
           +  
Sbjct: 496 LLK 498


>gi|206575793|ref|YP_002237488.1| multidrug resistance protein MdtC [Klebsiella pneumoniae 342]
 gi|288934413|ref|YP_003438472.1| acriflavin resistance protein [Klebsiella variicola At-22]
 gi|226700776|sp|B5XPB8|MDTC_KLEP3 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|206564851|gb|ACI06627.1| multidrug resistance protein MdtC [Klebsiella pneumoniae 342]
 gi|288889142|gb|ADC57460.1| acriflavin resistance protein [Klebsiella variicola At-22]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/667 (10%), Positives = 180/667 (26%), Gaps = 44/667 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISLAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  + +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVDLNPQALFNQGVSLDAVRTAISDANVRKPQGALEDSAHRWQVQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                       +                 +   +  V +  +
Sbjct: 235 LKTAAD--------------------YQPLIVHYQNGAAVRLGDVATVSDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQQTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENISRHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++       +  + +      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLAVSLTLTPMMCGWLLKSGKPHQPTRNRGFGRLLVAVQGG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +      +R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLRHSRLTGLVVLGTIALSVWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R  L+            D    F    +   G      +  +   +   +++     + 
Sbjct: 575 MRGKLQDFMKIIREDPAVDNVTGFTGGSRVNSGMMFITLKPRDQRHETAQQVIDRLRKKL 634

Query: 654 TEIVGPK 660
               G  
Sbjct: 635 ANEPGAN 641



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 7/216 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQQTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---SRHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FA+ ++  I ++ + S+    P++        K 
Sbjct: 461 REFAVTLSVAIGISLAVSL-TLTPMMCGWLLKSGKP 495



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   + + + +T++   S+++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TISFNLPTGRSLSEASDAINRTMTQLGVPSSVRGSFAGTAQVFQQTMNAQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    +F   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGMLYESYVHPLTILSTLPSAGVGALLALEIFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++  + I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRTGN--LAPEEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|205353271|ref|YP_002227072.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|226700780|sp|B5RBW9|MDTC_SALG2 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|205273052|emb|CAR38000.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326628360|gb|EGE34703.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 1026

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 IDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPAQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|146341559|ref|YP_001206607.1| putative component of multidrug efflux pump, mdtB-like
           [Bradyrhizobium sp. ORS278]
 gi|146194365|emb|CAL78389.1| Putative component of multidrug efflux pump, mdtB-Like
           [Bradyrhizobium sp. ORS278]
          Length = 1048

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/531 (13%), Positives = 151/531 (28%), Gaps = 38/531 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L + I  IGL+       P   +   P       I +  +L GGS       
Sbjct: 12  KYPIGTSLLMAGILFIGLVA-----YPLLPVAPLPQVDFPT-IQVTANLPGGS------- 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       +T+ F  +R  +  A+ V   +  
Sbjct: 59  -PETMATSVAQPLERQFAQIPGIAQMTSTSYLGTASVTIQFDLNRSIDGAANDVQGAINA 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + +L                 S +L   +           S  +      QI       
Sbjct: 118 ASGQLPKSLPSPPTYRKVNPADSPILL-LSATSETLPLTTVSDAVDAGLAQQISQISGVA 176

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q +   +    +  + DP++L     +   +                             
Sbjct: 177 QVIIGGQQKPSIRVQIDPAKLVAKGLSMEDVRSQIA--------------------ITTV 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN      K   D+                             
Sbjct: 217 DSPKGNIDGERRAYTIYANDQLTDSKDWNDVIIAYRNGGPLRIRDIGKAVTGAEDAKQAA 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   +   +   T++    L   L A   P     V          +   
Sbjct: 277 WANGKRGVFLVIFKQPGANVIETVDRIKGLLPRLVAAIPPAIKIDVISDRTTTIRAAVED 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ L ++   A++  +G TL   S+  + 
Sbjct: 337 VQFTLILTIFLVVMVIFIFLRSFWATVIPTITVPLALLGACAMMWGVGYTLDNLSLMALT 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I     + ++   +   G      TI   +I+ +   + L   G
Sbjct: 397 IAVGFVVDDAIVMLENISRYVEEGETPMAAAYKGAKEIGFTIVSISISLVAVLIPLLLMG 456

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           G      R FA+ + ++I +SMF ++++   M    +R +           
Sbjct: 457 GIIGRLFREFAVVLAMTIFVSMFVSLTLTPMMASRFLRNEHAAQHGKFYQW 507



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 95/278 (34%), Gaps = 12/278 (4%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                S   +I      +T   N  +         ++A R      +R   +++   + +
Sbjct: 213 ITTVDSPKGNIDGERRAYTIYANDQLTDSKDWNDVIIAYRNGGPLRIRDIGKAVTGAEDA 272

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI- 666
            Q         V L             ++ +K  +  +V          V    +  +  
Sbjct: 273 KQAAWANGKRGVFLVIFKQPGANVIETVDRIKGLLPRLVAAIPPAIKIDVISDRTTTIRA 332

Query: 667 ----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
                +  + + I  + M+I+I++R  ++  +    T+ L +          G   +  +
Sbjct: 333 AVEDVQFTLILTIFLVVMVIFIFLR-SFWATVIPTITVPLALLGACAMMWGVGYTLDNLS 391

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+   +G+ V+D +V+ + +    +      +      K   E     V  S++    
Sbjct: 392 LMALTIAVGFVVDDAIVMLENI---SRYVEEGETPMAAAYKGAKEIGFTIVSISISLVAV 448

Query: 783 VLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           ++P+ + GG +      FA+ +A  I V+   S+ +  
Sbjct: 449 LIPLLLMGGIIGRLFREFAVVLAMTIFVSMFVSLTLTP 486



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 94/247 (38%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V +    D   + +                  +   + + +     VA  +  + V++ +
Sbjct: 774  VKSPTTGDQVPLSTFANWTTAPVKPLSISHQGQFPSITISFNLAQGVALGQATDAVQRAM 833

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             E+   +T+ ++     +  ++ +    + ++ + + + + + I ++ +   +  ++TL 
Sbjct: 834  VELGAPATLNSSFQGTAQAFQQSLSTVPLLILAALVVVYLILGILYESYIHPITILSTLP 893

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L     FG EF+L A+  V+ LIG    + +++ D            +     I
Sbjct: 894  SAGVGALAILMAFGYEFSLIALIGVILLIGIVKKNGIMMVD--FAIAAERDQHLPPEQSI 951

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++        + T+MAA +  +P+ +    G  +       M  G++V+   ++F    
Sbjct: 952  RQAALLRFRPIMMTTMAALLGGVPLMLGNGTGSEIRQPLGYAMVGGLIVSQMLTLFTTPV 1011

Query: 819  ILLFIYD 825
            I L++  
Sbjct: 1012 IYLYLDK 1018


>gi|330873029|gb|EGH07178.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 928

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/523 (13%), Positives = 149/523 (28%), Gaps = 42/523 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVD 61
               ++L   I  +G++       P+  +   P A                 +   L   
Sbjct: 15  PVATLLLTFAIVLLGVIA-----FPRLPIAPLPEAEFPT-----------IQVTAQLPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        S       +TL F  ++  +  A +V   +  
Sbjct: 59  SPETMASSVATPLEVQFSAIPGMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINT 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D              S VL   ++   +    E S         Q+   E   
Sbjct: 119 AAGRLPADMPSLPTWRKVNPADSPVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVG 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   + +    +  +  P +L  L  T A +                             
Sbjct: 178 QVFITGQQRPAIRVQAAPEKLAALGLTLADIRLAV--------------------QQTSL 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +          ++  ++N      +    +                 +           
Sbjct: 218 NLAKGALYGKDSISTLSSNDQLFKPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKA 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L+          V          S   
Sbjct: 278 WSGDQQGVNIAIFRQPGANIVETVDRIQRELPRLQEMLPATVDVSVLNDRTRTIRASLHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+ V+ + +      L+    + +++I + A++ L G +L   ++  IV
Sbjct: 338 VEMTLLIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E I       Q +  +   G      T+   + + + A + L F G
Sbjct: 398 VAVGFVVDDAIVVVENIHRHLEAGQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMG 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G   + FA+T   +ILIS+  ++++   +    +R     
Sbjct: 458 GVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMRAPTHN 500



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVETVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPATVDVSVLNDRTRTIRASLHEVEMTLLIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495


>gi|226312800|ref|YP_002772694.1| efflux system [Brevibacillus brevis NBRC 100599]
 gi|226095748|dbj|BAH44190.1| putative efflux system [Brevibacillus brevis NBRC 100599]
          Length = 1045

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/543 (10%), Positives = 156/543 (28%), Gaps = 43/543 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++L   +   G +      LP+  +D  P       +           +V  VD
Sbjct: 9   KRPVTMIMLTLAMLIFGFVS-----LPRLAIDLMPDLNFPVAV-----------VVTSVD 52

Query: 62  E--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    ++  + +           +  +++ L F      +     +   +
Sbjct: 53  GGSPSEVEKLVTKPVEDALATVSDLDSIQSVSMEGASQVILMFNWGTDLDQATLDMREKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V   L    +   ++        I+      +Q I+   + + ++I+ R   +   + 
Sbjct: 113 DQVRGSLPDSARAPRVLRIDPNSTPIIEFAVTGEQDINKLKKMAEDMIQSR---LERIDG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                 S      +    DP++L     +  ++                         G+
Sbjct: 170 VASASISGGQSRIIDVTVDPAKLAAYGLSLDQVQQAL--------------------QGS 209

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                      G          +      +  ++   +G           +      V  
Sbjct: 210 NLSGSGGAVREGDAKLNIRVQGEFADVDQIA-LTPISVGGNSIRLSDIAQVKDTHQDVTQ 268

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +          +  +  +     +        +++        I           S 
Sbjct: 269 MSYVNGTPSLGIRVTKASGGNTIEVADDVKAELEKIKSELPEGVQIITTLDTSTYIKDSV 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   +  G+ +I+LF  +   +  ++A   + ++++ T  L+ + G T+ L S++G
Sbjct: 329 YTTAEHALLGGGIGMILLFFFLGSLRSMVIAVIVLPVSIVATFLLMYMSGQTINLISLSG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + LG+G  +D  +++ E +     + + +  +   G     + +  S +  +   + +  
Sbjct: 389 LTLGLGSLIDFAVVMLENVFRHREQGKGMMEAALDGSKEVGTAVMASALAQICVFLPIAL 448

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G A   F   + L+++ S   A+     ++  +      K         +  I     
Sbjct: 449 TEGIASELFGP-LALTVVYSHIAALVFSILLVPMLSSRILKKIPSHTHHENYRGINPVTW 507

Query: 540 IQF 542
              
Sbjct: 508 FNI 510



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 94/265 (35%), Gaps = 10/265 (3%)

Query: 571  YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
            Y  D      L + A     +++      +     +S    +  +   V       D  +
Sbjct: 763  YQEDINFLNNLRISAPGGAQIALTSVATINKIDVPVSINRANSSREVQVTSDLAGRDLSS 822

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             TR ++    K+      +     +        E      + +++S + + + +  +F+ 
Sbjct: 823  VTREVQEKISKLNLPDGYTVDFGGQSEEM---MESFSSLALAIVLSVVLLYMVMAAQFES 879

Query: 691  YF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             +     + ++   +T  L    + G   ++  +   + LIG  VN+ +V+ D +    +
Sbjct: 880  LYTPFIIMFSVPPTVTGVLLGLLVTGTTISVGVLIGYILLIGLVVNNAIVLIDYVN---Q 936

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV 806
            L    +   D I  +    L   + T++   +++ P+A  GG         A+ + FG+ 
Sbjct: 937  LRAKGMELFDAILHAGPIRLRPILMTTLTTILAIGPLAFSGGAGSETNAPMAVTVIFGLG 996

Query: 807  VAASSSIFIAAPILLFIYDWRAKNA 831
             +   ++ +   +  +  D   K  
Sbjct: 997  FSTLITLVLVPVVASWFDDAGKKRR 1021


>gi|254526476|ref|ZP_05138528.1| protein-export membrane protein SecD [Prochlorococcus marinus str.
           MIT 9202]
 gi|221537900|gb|EEE40353.1| protein-export membrane protein SecD [Prochlorococcus marinus str.
           MIT 9202]
          Length = 489

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 134/530 (25%), Positives = 227/530 (42%), Gaps = 66/530 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R   WL  +  ++     +  L N+                 + LGLDL+GGS L L++ 
Sbjct: 3   RRQGWLFFIIFLLTL--SVYLLINY----------------PLQLGLDLQGGSQLTLQII 44

Query: 61  -DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLF 118
            +E       L+  +  +   +   G+   +++    +++ L     +     +  +   
Sbjct: 45  KEEGKVTRDELEAVNSVIDRRVNNLGVSESNLQTLGGDQLILELPGEQNPLVASRVLGKT 104

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                                        +Q          ++     I++ I++   +E
Sbjct: 105 ALLEFR-----------------------TQKEGTSTDLKTLQLQRFSIKELIEKYSSAE 141

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
            +                 D + L+ + G    +       + S   F   +   +  + 
Sbjct: 142 KSQY---------------DDNLLKTIQGDLKVIEQELNYSSTSNDLFGKLIEIKKYINK 186

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL---- 294
               +  K ++SG  L  A    +       V ++F   G  +F E+T+   G       
Sbjct: 187 EITNLFIKTDLSGKDLINAGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGTNQLLAI 246

Query: 295 ---AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                 +    +     N  I  G A ISGNF+ E A  L   L+ GSLP+ + IVE   
Sbjct: 247 ILDGESISEASVGNQFTNTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNT 306

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +GA LGS +I K   A ++GL+ + +FMI  Y   G V+  S+ L     LAL SL+  T
Sbjct: 307 IGALLGSKNILKSLYAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLALYSLIPVT 366

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP I+G++L IG+AVD+NIL+ ERIREE     ++  S+D GF RA S+I D +IT L
Sbjct: 367 LTLPGISGLILSIGMAVDANILIFERIREELYDGNTLTRSIDSGFQRANSSIIDGHITTL 426

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           ++  VLF  G   V+GFA T+G+ +LIS+FT+++  + ++ F   Y+ ++
Sbjct: 427 LSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLR 476



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 99/259 (38%), Gaps = 4/259 (1%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +  G     +  +      ++   L+   I + S  N               G+  A+  
Sbjct: 224 NSGGEKFAEITKSIAGTNQLLAIILDGESISEASVGNQFTNTGITGGSATISGNFSAENA 283

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
               V+ K   +     I  T  +G  +  + I K +   I   I + I++   ++    
Sbjct: 284 RELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSLYAAISGLIFVGIFMIFNYRI-LG 342

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             ++ +L+L     L  ++L  +   L  ++ ++  IG +V+  +++++R+R+ +     
Sbjct: 343 FVSVLSLVLYGFFNLALYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYD--- 399

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             +    ID          +   +   +S   + + G + +  FA  +  G++++  +S+
Sbjct: 400 GNTLTRSIDSGFQRANSSIIDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSL 459

Query: 814 FIAAPILLFIYDWRAKNAR 832
             +  IL F   +++   +
Sbjct: 460 NCSKTILRFFTTYQSLRQK 478


>gi|197122797|ref|YP_002134748.1| acriflavin resistance protein [Anaeromyxobacter sp. K]
 gi|196172646|gb|ACG73619.1| acriflavin resistance protein [Anaeromyxobacter sp. K]
          Length = 1028

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 63/510 (12%), Positives = 142/510 (27%), Gaps = 40/510 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   +   GL     N  P+  +D+ P                    VL   +
Sbjct: 10  RPVFTAMLVLAVVVFGL-----NAYPKIGVDQLPDVDVPLVT---------VTTVLPGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +E  + L           +  +++ L F+     +  A  V   +Q  
Sbjct: 56  PESIERDVSDPLEEALNGLAGLESMRSVNVESVSQVILQFSLETQVDVAAQDVRDRVQAT 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            SKL  D  + ++         I+    +           + +++      +        
Sbjct: 116 LSKLPDDADQPIVEKLDVGAAPILTLALSGPVPPEELTRLADDVL---KPALQRQGGVGS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP+RLR      ++++      +                      
Sbjct: 173 VEVVGGREREIRIVVDPARLRTFGVAASEVAQAVRGGSVDVPAGRAEDPRAEVVVKVSGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                E+                     D+     G          ++    A       
Sbjct: 233 ARSVDEL--------------------RDLVVATPGGAPVRLRDVADVVDGPAEARSAAT 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   ++  +     E      A ++          V   N      S    
Sbjct: 273 DDGRQAVALVVKKQSGANTVQVAERVTAALAGMQQLLPEDAQLRVVRDNSKFIRASIDGV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K    +   L + ++ + +   +  +V+  ++  +VI T A +  LG T  + ++  + L
Sbjct: 333 KEDLVLGGLLAVAIVLVFLRSWRSTIVSALALPTSVIGTFAAMHALGYTFNVITMLALTL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL +D  I+V E I            +   G       +    +  L   V + F   
Sbjct: 393 SIGLLIDDAIVVIENISRHAEDGTPPARAAHAGTKEIALAVLAVTLAILAVFVPVAFMEG 452

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRA 509
             G     F +T+ +++ IS   ++++   
Sbjct: 453 IVGRFFSAFGMTVAVAVGISYLVSMTLTPM 482



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 47/137 (34%), Gaps = 4/137 (2%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+   +A+ I +     W   + +   L   +  T       G  FN+  + A+   IG 
Sbjct: 337 VLGGLLAVAIVLVFLRSWRSTIVSALALPTSVIGTFAAMHALGYTFNVITMLALTLSIGL 396

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++D +VV + +    +                 E     +  ++A     +P+A   G 
Sbjct: 397 LIDDAIVVIENI---SRHAEDGTPPARAAHAGTKEIALAVLAVTLAILAVFVPVAFMEGI 453

Query: 793 VIGSF-AIPMAFGIVVA 808
           V   F A  M   + V 
Sbjct: 454 VGRFFSAFGMTVAVAVG 470



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 93/264 (35%), Gaps = 12/264 (4%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                 L       G D  G + +   A + V+L  V + +E   +  I  Q    +   
Sbjct: 743 DSYDIRLKLPADARGADRLGELTVRSAAGQLVELRNVATLVEEPTLSQIDRQEQLRQVTL 802

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L  L        A   +     K++   V        + +G           +  +++  
Sbjct: 803 LADLPRGASLGAAMQDLAAFAAKELPPTVITDFEGQGKELGKTAGAF-----VQALLLGV 857

Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           + + + +  +F         + +L   +   LG     G   ++ A+  ++ L+G    +
Sbjct: 858 VLVYMILAAQFGSLLDPFTIMLSLPFAVIGALGALLATGQFMSIFALIGMIMLMGLVTKN 917

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
            +++ +      +L     S RD + ++    L   + T++A    ++P+A+    G  +
Sbjct: 918 GILLVEFAN---QLRERGRSARDALLEAGPIRLRPILMTTVAMIAGMVPVALARGDGAEM 974

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
               AI +  G+V +   ++ +  
Sbjct: 975 RVPMAIAIIGGLVTSTLLTLVVVP 998


>gi|149185329|ref|ZP_01863646.1| hypothetical protein ED21_19787 [Erythrobacter sp. SD-21]
 gi|148831440|gb|EDL49874.1| hypothetical protein ED21_19787 [Erythrobacter sp. SD-21]
          Length = 1157

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 64/550 (11%), Positives = 159/550 (28%), Gaps = 44/550 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-- 59
           RN    ++ ++ +   G+L        +  +   P                  ++ +   
Sbjct: 12  RNPVIPLVAFTALLLAGILS-----FARMDVVNNPDIDFPA-----------VNVTISQP 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 +   +    +     +        + R+  +   + F       N   +V   +
Sbjct: 56  GAAPTEIENQITQRVESAVRAVNGVNKITSTAREGSSNTFIEFEIGTDTNNAVAEVKNAI 115

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            GV S L     +  +         + +       +     + S  I      ++   E 
Sbjct: 116 DGVRSSLPDGILEPRIEKVNIAGGFLGIYAVEASDMTLE--QLSWFIDDAVAKRLLSIEG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +      +  ++    D ++++    T ++++      N    G M  V   R S   
Sbjct: 174 MAEAGRFGGVDREIEVTLDLAKMQAYGVTASEINQALRRDNIDAAGGMAEVGGTRQSVRV 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
               E    +S   +                                   +    +    
Sbjct: 234 LGNTESAYALSQRQIRL--------------------ANGTTLKLADVATVRDGNSERSS 273

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +    +     S     S     E A  L A + A +  ++   +    V       
Sbjct: 274 ISKVRDKEVVNFYMSRAKGASDVTVFEDAQELIAQVEAENPDVEFIQL-FDTVKYTKDQY 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S         A L ++V+F  +   +   ++  +I L+ I T   + LLG  L   S+  
Sbjct: 333 SSSIAAMIEGAILAVVVVFFFLRDWRATFISAVAIPLSAIPTFWFMDLLGFNLNQLSLLA 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L  G+ VD  I+  E I    R  ++ + +           +  ++   +   + +  
Sbjct: 393 LGLVAGVLVDDAIVEIENIVRHMRMGKTAYQASIDAADEIGLPVVATSFCIVAVFLPVGL 452

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + F +T+ +++L+S+  A  I   +  + ++ K   +         ++   
Sbjct: 453 MPGVTGQFFKNFGLTVVIAVLMSLAVARMITPMLAAYFLQAKGHAAHGEGKWMDRYMRVL 512

Query: 537 CIAIQFMRAR 546
             +++  +  
Sbjct: 513 HWSLERGKMH 522



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 78/250 (31%), Gaps = 6/250 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
              Q+ +     + L+ V +  +         +  D E       + +    V      +
Sbjct: 244 SQRQIRLANGTTLKLADVATVRDGNSERSSISKVRDKEVVNFYMSRAKGASDVTVFEDAQ 303

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  ++    P                +        +  + +A+++  +    W     +
Sbjct: 304 ELIAQVEAENPDVEFIQLFDTVKYTKDQYSSSIAAMIEGAILAVVVVFFFLRDWRATFIS 363

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + L    T  F  L G   N  ++ A+  + G  V+D +V  + +   ++      +
Sbjct: 364 AVAIPLSAIPTFWFMDLLGFNLNQLSLLALGLVAGVLVDDAIVEIENI---VRHMRMGKT 420

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
                  + +E     V TS       LP+ +  G       +F + +   ++++ + + 
Sbjct: 421 AYQASIDAADEIGLPVVATSFCIVAVFLPVGLMPGVTGQFFKNFGLTVVIAVLMSLAVAR 480

Query: 814 FIAAPILLFI 823
            I   +  + 
Sbjct: 481 MITPMLAAYF 490


>gi|238919100|ref|YP_002932614.1| multidrug resistance protein MdtB [Edwardsiella ictaluri 93-146]
 gi|238868668|gb|ACR68379.1| multidrug resistance protein MdtB [Edwardsiella ictaluri 93-146]
          Length = 634

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 56/527 (10%), Positives = 135/527 (25%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           +   P                    +     
Sbjct: 22  RPVATTLLMIAILLAGLVA-----YRALPVSALPQVDYPTIQ---------VVTLYPGAS 67

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D     +    +     +              + ITL F  S   +    +V   +   
Sbjct: 68  PDVTASAITAPLERQFGQMSGLQQMSSQSSGGASVITLQFQLSLALDVAEQEVQAAINAA 127

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +   +    +    +  +   +I        
Sbjct: 128 TNLLPNDLPYPPIYSKVNPADPPILTLAVVSDAL-SLPQVEDLVETRISQKIAQVGGVGL 186

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    + +       ++  +       N +             +      
Sbjct: 187 VTLAGGQRPAVRISLNGAATAAYGLSSEAVRSAIASANVNSPKGSLDGPTRAITLNANDQ 246

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                       +    +          +     ++ +          
Sbjct: 247 LRSA--------------------QEYQHLIVAYRNGAPVYLRDIASVEQGAENTQLAAW 286

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +        LR          V          S S  
Sbjct: 287 ANNHPAIVINVQRQPGANVIATADAVLAQLPQLRESLPASVSISVLNDRTQTIRASVSDT 346

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   LV++V+++ +      L+   ++ L++I T A +  LG ++   ++  + +
Sbjct: 347 LHELLLAVALVVMVIYLFLRNLPATLIPGVAVPLSLIGTFAAMYFLGFSINNLTLMALTI 406

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G      TI     + +   + L F G 
Sbjct: 407 ATGFVVDDAIVVIENIERHLENGDPPLRAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 466

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 467 IIGRLFREFAVTLAVAILISAVVSLTLTPMMCARLLSQESLRRQNRF 513



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 79/232 (34%), Gaps = 12/232 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R      Q  + +        +  + +  Q           + V  ++ ++        
Sbjct: 268 LRDIASVEQGAENTQLAAWANNHPAIVINVQRQPGANVIATADAVLAQLPQLRESLPASV 327

Query: 654 TEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           +  V    ++ +          + + ++ + M+IY+++R      L     + L +  T 
Sbjct: 328 SISVLNDRTQTIRASVSDTLHELLLAVALVVMVIYLFLR-NLPATLIPGVAVPLSLIGTF 386

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                 G   N   + A+    G+ V+D +VV + +    +             K   E 
Sbjct: 387 AAMYFLGFSINNLTLMALTIATGFVVDDAIVVIENI---ERHLENGDPPLRAALKGAGEI 443

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
               +  + +    ++P+   G   G +   FA+ +A  I+++A  S+ +  
Sbjct: 444 GFTIISLTFSLIAVLIPLLFMGDIIGRLFREFAVTLAVAILISAVVSLTLTP 495


>gi|82543450|ref|YP_407397.1| multidrug efflux system subunit MdtC [Shigella boydii Sb227]
 gi|123560068|sp|Q323D9|MDTC_SHIBS RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|81244861|gb|ABB65569.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|320183715|gb|EFW58553.1| Multidrug transporter MdtC [Shigella flexneri CDC 796-83]
 gi|332097124|gb|EGJ02107.1| multidrug resistance protein mdtC [Shigella boydii 3594-74]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGKLYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|301021222|ref|ZP_07185255.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 69-1]
 gi|300398231|gb|EFJ81769.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 69-1]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRSAISNANVRKPQGALEDSTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|292488734|ref|YP_003531621.1| multidrug resistance protein [Erwinia amylovora CFBP1430]
 gi|292899890|ref|YP_003539259.1| multidrug resistance protein [Erwinia amylovora ATCC 49946]
 gi|291199738|emb|CBJ46858.1| multidrug resistance protein [Erwinia amylovora ATCC 49946]
 gi|291554168|emb|CBA21379.1| Multidrug resistance protein [Erwinia amylovora CFBP1430]
          Length = 1039

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/621 (11%), Positives = 165/621 (26%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     L              + I L F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQLSGLKQMDSQSSGGASVINLQFQLNLALDVAGQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        + +  +  +   +I        
Sbjct: 125 TNLLPDDLPNQPVYSKVNPADPPMMT-LAVTSSTMPMTQVADMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  ++  +                G   +  + G+   
Sbjct: 184 VTLSGGQRPAVRVKLNAPALAALGISSETVRSAI------------GNANVNSAKGSLDG 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            E  + +S          F          +                 + +       G  
Sbjct: 232 PERSITLSANDQIKTADGFRQ--------LIISYQNGSPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    L   L A         +          S    
Sbjct: 284 ANRQPAIVLNVQRQPGANIIATADHIRRLLPSLTASLPKSVEVKLLSDRSSLIRASVRDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++ + +      L+   ++ L++I T A +  LG +L   ++  + +
Sbjct: 344 QFELLLALALVVMIISLFLRNLAATLIPAVAVPLSLIGTFAAMYFLGFSLNNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K      +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVVENISRHLEKGDKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS F ++++   M   ++    ++  +    +   L    IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAFVSLTLTPMMCARMLSAGSLRQQNRFSRASEALFDRIIA 523

Query: 540 IQ-------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                                   +I  +  +      + +   G IQ  V A + V  +
Sbjct: 524 RYGLLLQRVLHHPWLTLGVALGTLAITVLLWISIPKGFFPLQDNGIIQGTVQAPQSVSYA 583

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    +++    +       
Sbjct: 584 NMAQRQQAVASVIMQDPAVQS 604



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 6/140 (4%)

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           +I           L     + L +  T       G   N   + A+    G+ V+D +VV
Sbjct: 356 MIISLFLRNLAATLIPAVAVPLSLIGTFAAMYFLGFSLNNLTLMALTIATGFVVDDAIVV 415

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF 797
            + +    +             K   E     +  + +    ++P+   G   G +   F
Sbjct: 416 VENI---SRHLEKGDKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREF 472

Query: 798 AIPMAFGIVVAASSSIFIAA 817
           A+ +A  I+++A  S+ +  
Sbjct: 473 AVTLAVAILISAFVSLTLTP 492



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 88/246 (35%), Gaps = 6/246 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V        SV  S + S++    +      ++       +   D  +  + ++ +    
Sbjct: 780  VRLKSSDGGSVPLSAIASVEQRHGALSINHLDQFPSTTFSFNVSDDASLEQAVDAISLAQ 839

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             ++   + I           +  +   +  ++ + +AM I + + ++ +   +  ++TL 
Sbjct: 840  QKLAMPADITTRFQGSTLAFKTALANTVWLIVAAIVAMYIVLGVLYESFIHPVTILSTLP 899

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    + G E ++ A+  ++ LIG    + +++ D            +     I
Sbjct: 900  TAGAGALLALMIAGNELDVIAIIGIILLIGIVKKNAIMMID--FALAAERDQGMMPYQAI 957

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++        + T++AA    LP+ +    G  +     I M  G+VV+   ++F    
Sbjct: 958  YQACLLRFRPILMTTLAALFGALPLMLSHGVGAELRRPLGIAMVGGLVVSQVLTLFTTPV 1017

Query: 819  ILLFIY 824
            I L   
Sbjct: 1018 IYLLFD 1023


>gi|255039271|ref|YP_003089892.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
 gi|254952027|gb|ACT96727.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
          Length = 1049

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 79/679 (11%), Positives = 178/679 (26%), Gaps = 39/679 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N     ++  MI  +GLL      L    + ++P   P              +   +   
Sbjct: 8   NPVLSTVISIMIVILGLL-----GLFSLPISQYPDIAPPAVE---------VNTTYQGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    +E  + ++             +  IT++F      +  A  V   +  
Sbjct: 54  AAVVMKTVITPLEEELNGVENMTYMTSKASNDGSATITINFKQGTDPDMAAINVQNRITK 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +  K  + T+      +       +            +    + QI       
Sbjct: 114 ATSLLPAEVIKVGITTSKRLNSEVFSFLLYSEDGKYDQKFLDNYLKINVMPQIKRISGIG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   +     P  +         +       N        G      +   QY
Sbjct: 174 SAQVYGSMDYSMRIWLKPDVMAIYGLVPQDIIRALAEQNIEAAPGKVGE---NSNQVFQY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++    +              K  +    I       +        ++           
Sbjct: 231 TLKYTGRL-------------EKPEQFENIILRSTGNGQLLTLKDVASLEMGSYTYASTI 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +  A  + +  I+    +               V          S S 
Sbjct: 278 TAQGRQAPYVAITQMAGSNAHEIIKECERILGEASKSFPQGVRYSVFSNANEFLDASISK 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+F+ +   +  L+   ++ + +I T   L +LG T+ L ++  +V
Sbjct: 338 LIWTLVEAFALVFIVVFLFLQDFRSTLIPAIAVPVAIIGTFFFLKILGFTINLLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+ VD  I+V E +  +      S   +     S   + I    +      V + F 
Sbjct: 398 LAIGIVVDDAIVVVEAVHAKLDHGYRSAKKATIDAMSEISTAIVSITLIMAAVFVPVTFV 457

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      + F +T+ ++I+IS   A+++  A+   ++  K                   
Sbjct: 458 TGSVGIFYKQFGLTLAVAIVISAINALTLSPALCAILL--KPHSGAHQAGNGFLQRFYRG 515

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               F                     +        + +              D   +  N
Sbjct: 516 FNASFEAMTGRYKRSVRWLIHKKWIAVGGIAAFSALLWFLVSTTPTGFVPNEDSGSIYGN 575

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +       +        +   +       + V++   ++++    +    +         
Sbjct: 576 VILAPATSLERTEIIANQIDSIARTIPEIELVSRLAGMDLMSGVGSSYAAIFIRLKPWSQ 635

Query: 658 GPKISRELIRKGIVGVIIS 676
             +  +++  K IVG + +
Sbjct: 636 RTEKGQDI--KSIVGTLFA 652



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 87/258 (33%), Gaps = 9/258 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + + +     L  ++                  +      +            +
Sbjct: 241 PEQFENIILRSTGNGQLLTLKDVASLEMGSYTYASTITAQGRQAPYVAITQMAGSNAHEI 300

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KW 690
           ++  ++ + E            V    +  L   I K I  ++ +   + I +++    +
Sbjct: 301 IKECERILGEASKSFPQGVRYSVFSNANEFLDASISKLIWTLVEAFALVFIVVFLFLQDF 360

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     + + I  T  F  + G   NL  + A++  IG  V+D +VV + +   +  
Sbjct: 361 RSTLIPAIAVPVAIIGTFFFLKILGFTINLLTLFALVLAIGIVVDDAIVVVEAVHAKLDH 420

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVV 807
                S +     +++E     V  ++      +P+  V G   I    F + +A  IV+
Sbjct: 421 GYR--SAKKATIDAMSEISTAIVSITLIMAAVFVPVTFVTGSVGIFYKQFGLTLAVAIVI 478

Query: 808 AASSSIFIAAPILLFIYD 825
           +A +++ ++  +   +  
Sbjct: 479 SAINALTLSPALCAILLK 496



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 61/166 (36%), Gaps = 15/166 (9%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +I     + IY  +      +      + +L + +     F  +FG++ N+    +++ L
Sbjct: 874  LIFLLSLVFIYFLLSAQYKSYILPFSVLLSLPVGLAGAFLFARIFGLDNNIFLQISLIML 933

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR---SVYTSMAAFISVLPM 786
            IG    + +++ +            ++   ++  ++   + R    + TS A    +LP+
Sbjct: 934  IGLLAKNAILIVE------FALMHRLNGESIVRSAVTGAVTRLRPILMTSFAFIFGLLPL 987

Query: 787  AVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +  G   +   S       G++V     +F+   + +       +
Sbjct: 988  MLATGAGALSNRSIGTAAVGGMLVGTLFGVFVIPVLFVLFQTLHER 1033


>gi|87302253|ref|ZP_01085078.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 5701]
 gi|87283178|gb|EAQ75134.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 5701]
          Length = 1132

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 68/526 (12%), Positives = 151/526 (28%), Gaps = 40/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   +I   GL+       P   ++  P   P               + +  +
Sbjct: 9   RRPVLTAVCSLLIVIAGLISI-----PLLPVENLPDIAPPT-------------VSVSAN 50

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++   +  L   +        I   S     + IT++FA    K      V 
Sbjct: 51  YTGADAISVEQGVTSVLEQQINGVEGMEYITSSSASDGSSAITVAFASGSDKNINQVNVQ 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI--SHAIEQSMEIIRQRIDQI 174
             +     +L  + +++ +         +++                 S  + +   D+I
Sbjct: 111 NRVGLAEPQLPEEVRQSGVSVNKASTSILLVYIFGSSDAKKPYSVETISGLLDQGLTDEI 170

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                           + +    +P+ L     T + +       N        G     
Sbjct: 171 KRVTGVGDVAYFGNRQLAIRLWLNPTSLAVNGLTASDVVDSLTSQNRLVPAGQIGGSPAP 230

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                 + +E +  ++ +                 + +     G     +          
Sbjct: 231 ADQEFTFSIELQGRLTSVEEFEN------------LIVRRTPSGGLVRLKDVGRVTLGGE 278

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           +  +    L             +  +          +     +             N   
Sbjct: 279 SYDVSSTDLNDVPSVGMAVYQLSGSNALEVSTGVKKVLESFASTLPVGVKMEKVYDNSDF 338

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S     G       LV+++LF+ +   K  LV   +I +++I T A+  L+G +L  
Sbjct: 339 INASIEEVVGALRDAIVLVVLILFLFLQDWKATLVPTIAIPVSLIGTFAVAKLVGVSLNQ 398

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            ++ G+VL  GL VD  I+V E    + R       +     +  +  I  +++  +   
Sbjct: 399 LTLFGLVLATGLVVDDGIVVIEDTVSKMRSGLDALSAARAAMNELFGAILATSLVLIAVF 458

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           V + FF    G   + F +T+  +I IS F A++    +   ++  
Sbjct: 459 VPVLFFPGATGTIYKQFGVTIMAAIAISTFNALTFSPMLSGLLLDR 504



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 6/141 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + + +  T     L G+  N   +  ++   G  V+D +VV   +   +
Sbjct: 367 DWKATLVPTIAIPVSLIGTFAVAKLVGVSLNQLTLFGLVLATGLVVDDGIVV---IEDTV 423

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGI 805
               + +        ++NE  G  + TS+      +P+  + G    I   F + +   I
Sbjct: 424 SKMRSGLDALSAARAAMNELFGAILATSLVLIAVFVPVLFFPGATGTIYKQFGVTIMAAI 483

Query: 806 VVAASSSIFIAAPILLFIYDW 826
            ++  +++  +  +   + D 
Sbjct: 484 AISTFNALTFSPMLSGLLLDR 504



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/216 (19%), Positives = 84/216 (38%), Gaps = 10/216 (4%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
             +   + A  R    V K +  +     I         ISRE I+ G + + I A+ +L+
Sbjct: 912  IKIEGTTAPGRSTGEVIKGMQNLFRSLQINGLGYDWTGISREEIKAGSLALAIFALGILV 971

Query: 683  YIWI----RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
               +           L  + T+   +   L F +L G   N+ A   ++ LIG +  + +
Sbjct: 972  VYLVLAAQYESVSDPLIVLMTVPTAMLGALLFLSLRGEVLNVYAQVGLVMLIGLAAKNGI 1031

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS-- 796
            ++ D    N +L    +   +   +S    L   + T++A+ +  LP+    G+   S  
Sbjct: 1032 LIVD--LANQRLAG-GLDVLESARESARSRLRPILMTAIASLLGFLPLVFSSGAGARSQI 1088

Query: 797  -FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 +  G+ VA   S+F+     + +  W  + A
Sbjct: 1089 SLGTVVFGGLAVATVLSLFVVPVFYVELKSWLGRQA 1124


>gi|330813274|ref|YP_004357513.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486369|gb|AEA80774.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Candidatus Pelagibacter sp. IMCC9063]
          Length = 517

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/512 (11%), Positives = 136/512 (26%), Gaps = 38/512 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  ++   G++        +  L   P                   +     
Sbjct: 9   KRPVFATVLSLVLVLFGIVT-----FNKIPLRELPDVETAKV---------SIRVDYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V+  +    ++               +  ++ I L F      +   + V   +  
Sbjct: 55  SASIVDSQITQKIEDRVGGTPGVVTVDSKSQDGRSTINLEFDLGIDLDTATNDVRERIAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   +    +   +   +    + +    +   +    +E +    R   D         
Sbjct: 115 IVDDIPDQAEPPQIFKASAARTTTMWLSFSSAVMSD--LELTDYANRYLKDAFSNVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q        + L    DP+ +     T  ++       N          + +        
Sbjct: 173 QIRLGGERELSLRIWLDPTAMAARNITVQELESTLRKQNVEFPAGKIESKSM-------- 224

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       L         K       +                 +           
Sbjct: 225 -----------DLIIKVEKAYVKIEDYQNLVLKRNSDGSLVKLRDVAKLEFGALNTSTLF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 I       ++  +     +        +           V          +   
Sbjct: 274 KGNGRQIVGLGIYQQSTANTIEVAKLVKEKIKEIAPSLPEGSSLEVSFDRSTYIGEAIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV+I++F+ +      ++   +I + +I T   + L G ++ L ++  IV
Sbjct: 334 VYKTIIIAVILVIIIIFLFLGNLTAVIIPAVAIPVCLISTFLAIYLAGFSINLFTLMAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I++ E I       ++   +   G  +    I  + +  +   + L F  
Sbjct: 394 ISIGIVVDDAIVMGENIYRRMEGGETSLIAAYKGSKQVAFAIIATTLVLVSVFLPLIFIK 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAM 510
           G   R     AITM  +++IS F A+S+   +
Sbjct: 454 GLIGRLFLEMAITMSFAVIISSFVALSLSPMI 485



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 54/143 (37%), Gaps = 10/143 (6%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +     + + +  T     L G   NL  + A++  IG  V+D +V+ + +    +    
Sbjct: 360 IIPAVAIPVCLISTFLAIYLAGFSINLFTLMAIVISIGIVVDDAIVMGENI---YRRMEG 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAAS 810
             +      K   +     + T++      LP+    G +   F   AI M+F +++   
Sbjct: 417 GETSLIAAYKGSKQVAFAIIATTLVLVSVFLPLIFIKGLIGRLFLEMAITMSFAVII--- 473

Query: 811 SSIFIAAPILLFIYDWRAKNARI 833
            S F+A  +   I     K  +I
Sbjct: 474 -SSFVALSLSPMIGSKYLKIKKI 495


>gi|325265790|ref|ZP_08132477.1| acriflavin resistance protein B [Kingella denitrificans ATCC 33394]
 gi|324982773|gb|EGC18398.1| acriflavin resistance protein B [Kingella denitrificans ATCC 33394]
          Length = 1034

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/516 (13%), Positives = 152/516 (29%), Gaps = 40/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + ++L+ ++  IG L        +  ++  PS                  +     
Sbjct: 11  RKPIFTIVLFIVLTVIGTLS-----FQRLPINADPSVSFPIVT---------VSVAQSGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +   + +        ++    +  T+ FA     +   + V   +  
Sbjct: 57  SPDEMEKSVTTRIENALAGMTGVRHITSTITDGASSTTVEFALGTDIDKSVNDVRNTIAQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L     + ++     +  +++     +        E S  I      ++       
Sbjct: 117 IRSNLPQSITEPVVERLDTEGGALI--NYVVQAPNMSPAELSWFIDDTVSRELLAVRGVQ 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++     P RL  L  T  +++      N +             S     
Sbjct: 175 QVTRIGGAKREIHVALKPERLNALGITAEQVNAQLAQTNANIPAGRTISNAQEQSIRVLN 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +++   ++                      G R         +      V D  
Sbjct: 235 SAQTLQQLADTPISL--------------------GGGRFVKLSELAAVRDSSEQVRDRA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           S     E      A L A +       +   +V     +  +
Sbjct: 275 RLNGKEVIGFNVLRSKGSSDTVVAEGVEQAVAKLAAENP-DVKISIVHNSVENTRENYRV 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++V+ + +   +  LVA  ++ L+V+ T  ++ LLG TL   ++  I+
Sbjct: 334 TMNTLLEGALLTVLVVMLFLRNWRATLVAALALPLSVLPTFFVMQLLGYTLNSITLLAIM 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLD---MGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD  I+  E I +     +  F +          A   I  + I   +    + 
Sbjct: 394 LVIGILVDDAIVEIENIEQHLHMGKRPFQAAIDASDAIGLAVVAISGTIIAVFLPVSFIS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G     F +T+  ++  S+  A      +  +I
Sbjct: 454 GVVGQYFSQFGVTVSAAVAASLLVARMATPLLAAYI 489



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 84/219 (38%), Gaps = 9/219 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   + ++           VL  +          + ++  E    +   E+  +  + +
Sbjct: 794  DRARRIAVEADLAPGRTIGEVLAEIDTLPVWKSLPAGVRKAETGDAEFMTEMFEQFALAM 853

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +L+ + + F  +   L  +  L L I   +    L G   +L +V  +L L+G 
Sbjct: 854  GFGIMMVLVVLILLFADFLQPLTILVALPLSIGGAVAGLLLTGSALDLASVIGILMLMGI 913

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
               + +++ D + +        I+ ++ + ++  E     + T++A    ++P AV+ G 
Sbjct: 914  VTKNSILLVDFVIE---KRRHGIARQEALLQAGKERSRPIIMTTLAMVAGMVP-AVFAGG 969

Query: 793  VIGSF----AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F    AI +  G++ +   S+     +   + D R
Sbjct: 970  SGDGFRAVMAITVISGLIASTLLSLVFVPVVYTLMDDLR 1008



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 71/221 (32%), Gaps = 3/221 (1%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + +   R V LS + +  +S +      +    E      L+ +          +E 
Sbjct: 244 DTPISLGGGRFVKLSELAAVRDSSEQVRDRARLNGKEVIGFNVLRSKGSSDTVVAEGVEQ 303

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K+    P   I                     +  + + +L+ +     W   L A 
Sbjct: 304 AVAKLAAENPDVKISIVHNSVENTRENYRVTMNTLLEGALLTVLVVMLFLRNWRATLVAA 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             L L +  T     L G   N   + A++ +IG  V+D +V  + +     L+     F
Sbjct: 364 LALPLSVLPTFFVMQLLGYTLNSITLLAIMLVIGILVDDAIVEIENI--EQHLHMGKRPF 421

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           +  ID S +      V  S       LP++   G V   F+
Sbjct: 422 QAAIDAS-DAIGLAVVAISGTIIAVFLPVSFISGVVGQYFS 461


>gi|317483785|ref|ZP_07942726.1| AcrB/AcrD/AcrF family protein [Bilophila wadsworthia 3_1_6]
 gi|316924978|gb|EFV46123.1| AcrB/AcrD/AcrF family protein [Bilophila wadsworthia 3_1_6]
          Length = 1065

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 59/521 (11%), Positives = 139/521 (26%), Gaps = 39/521 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  +  ++  +   +G++      L +  +  +P   P               + +   
Sbjct: 8   QNPIFTNVIAIIAVILGIVS-----LTRLPIALYPDITPPT-------------IAVSAS 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       +   +   E +   S     +    +T++FA           + 
Sbjct: 50  YPGADAETVAKTVGAPIELQVNGVENMIYMSSTSADDGTYSLTVTFALGTDVNIAMVLLQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    ++  +  T      + +   +        +  +     Q  + +  
Sbjct: 110 NLVNNALPLLPQVVQQQGVTVTKHSPSILQVIALDSPGGSYDNLFLANYANLQIENVLSR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   Q          +    D  +L  L  +  +++      N        G R   D 
Sbjct: 170 VKGVGQVQAFGAGFYAMRIWLDLDKLNYLGVSVDEVNQAISQQNVQVAAGNVGGRPNSDK 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q  V  + ++                      I     G +         I      
Sbjct: 230 QAMQLTVLMQGQL-------------DTPTAFGDIIVKTLPGNQIIRLRDVGEIEMGAQS 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +                +   T          L     P     +         
Sbjct: 277 YGAQSQIRGDNAALIAIYQLPDANALETAANIRSAMEKLSKDFPPDMRWTMPFDTSHFVS 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            + +    T      LV++V+ + +   +  +     I + ++     L++ G ++ + S
Sbjct: 337 IAVTQVYLTFVKSIVLVMLVVLVFLQNFRAAVGPAVVIPVTLMGAFVFLNIAGFSVNMIS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT---ALIA 473
           +  +VL IGL VD +I+V E       +  +   +   G    + +I           + 
Sbjct: 397 LFALVLAIGLIVDDSIIVVEATMSHLERGLTPQEAALAGMRDLFLSIVAVMFVFASVFLP 456

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              L    G     FA+ +G + L+S   AIS+       +
Sbjct: 457 AATLPGITGQLYSQFALVIGGAALLSAVFAISLTPTECSLL 497



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 88/263 (33%), Gaps = 16/263 (6%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + +L    L+    F   I   +  N+ + L  V       Q      Q        +
Sbjct: 232 MQLTVLMQGQLDTPTAFGDIIVKTLPGNQIIRLRDVGEIEMGAQSYGAQSQIRGDNAALI 291

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              Q    +++     +    +K+++  P                  + +  +  + S +
Sbjct: 292 AIYQLPDANALETAANIRSAMEKLSKDFPPDMRWTMPFDTSHFVSIAVTQVYLTFVKSIV 351

Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            +++ + +  + +  A+G    + + +     F  + G   N+ ++ A++  IG  V+D 
Sbjct: 352 LVMLVVLVFLQNFRAAVGPAVVIPVTLMGAFVFLNIAGFSVNMISLFALVLAIGLIVDDS 411

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           ++V +     M      ++ ++     +     R ++ S+ A + V        + +   
Sbjct: 412 IIVVE---ATMSHLERGLTPQEAALAGM-----RDLFLSIVAVMFVFASVFLPAATLPGI 463

Query: 798 A------IPMAFGIVVAASSSIF 814
                    +  G   A  S++F
Sbjct: 464 TGQLYSQFALVIG-GAALLSAVF 485


>gi|302038815|ref|YP_003799137.1| multidrug efflux system subunit C [Candidatus Nitrospira defluvii]
 gi|300606879|emb|CBK43212.1| Multidrug efflux system, subunit C [Candidatus Nitrospira defluvii]
          Length = 1033

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/622 (11%), Positives = 168/622 (27%), Gaps = 45/622 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L      +G++           +   P       I+            L   
Sbjct: 9   RRPVATTLLTIGATLVGIVA-----FQFLPVASLPQVEFPT-IN--------VSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        S       +TL F  SR  +  A  V   +  
Sbjct: 55  SPETMASSVAAPLERQFTRIAGVTEMTSSSTIGGTNVTLQFELSRDIDGAARDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +       +        +L    +   +    +           ++   E   
Sbjct: 115 ARADLPSNLPTVPRYSKVNPADGPILI-LALTSELVSRGQMYDAASSILQQKLSQVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +  + +P+ L +       +                             
Sbjct: 174 QVAVGGGSLPAIRVDLNPTALNKYGIGLGDVRQVLTS--------------------TNV 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                             N   +  +  + +       R        ++   +  +    
Sbjct: 214 NRPKGQLTGDERTWEIRTNDQLRQAEEYLPLIVAYRNGRAVQLSDVASVETSVEDLRTMG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V         I   +A  +   T++        L A         +          S   
Sbjct: 274 VANGTPAVLVIIYRQAGANIIETVDRLRAQLPQLEASLPGSMSLSIVMDRTPVIRASLHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T AI  GLV++V+F+ +   +  L+   ++ +++I T  ++ L G +L   S+  + 
Sbjct: 334 VERTLAISVGLVILVVFVFLRNLRATLIPAVAVPVSLISTFGVMYLFGYSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I     +  S   +   G      T+    ++ +   + +F  G
Sbjct: 394 IATGFVVDDAIVVLENITRYREQGLSPVDAALRGAKEIAFTVVSMTLSLVAVFIPIFLMG 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FA+T+  +IL+S+  +++ +  +   +++ +   +                
Sbjct: 454 GMLGRLFREFAVTLSTAILVSLVVSLTTIPMLCARVLKSEPRDTHGWWYRVSERGFGWLS 513

Query: 539 A-------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                         R   V      ++     +      +     G +   + A + +  
Sbjct: 514 RGYATSLAWVLRHPRTMLVVTLGTMALTVYLYILVPKGFFPQQDTGRLFGNIQAAQDISF 573

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
             +R  L  +     S      
Sbjct: 574 QAMRQKLTDVVDIIKSDPAVAS 595



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 64/146 (43%), Gaps = 7/146 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +  + +++++++R      L     + + +  T G   LFG   +  ++ A+    
Sbjct: 338 LAISVGLVILVVFVFLR-NLRATLIPAVAVPVSLISTFGVMYLFGYSLDNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +     +S  D   +   E     V  +++     +P+ + G
Sbjct: 397 GFVVDDAIVVLENI---TRYREQGLSPVDAALRGAKEIAFTVVSMTLSLVAVFIPIFLMG 453

Query: 791 GS---VIGSFAIPMAFGIVVAASSSI 813
           G    +   FA+ ++  I+V+   S+
Sbjct: 454 GMLGRLFREFAVTLSTAILVSLVVSL 479



 Score = 44.7 bits (103), Expect = 0.072,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 86/223 (38%), Gaps = 5/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V L +      +  + +  V + + +I   +T++ T     K  +  +      +
Sbjct: 802  GQFPAVTLSFNMAPGASLGQAVLAVDQAMHDIGLPATVRGTFQGTAKAFQSSVENQPWLI 861

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + + I + I ++ +   +  ++TL       L    LF  E ++ A+  ++ LIG 
Sbjct: 862  LAALVTVYIVLGILYESYIHPITILSTLPSAGVGALLALLLFKTELSMIALIGIMLLIGI 921

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM---AAFISVLPMAVW 789
               + +++ D    + +      + ++ I ++        + T+       + +      
Sbjct: 922  VKKNAIMMIDFAL-HSERMVEGKTPQEAIYEACLLRFRPIMMTTAAALLGALPLAVGMGV 980

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     I +  G++V+   +++    + LF+   R +  R
Sbjct: 981  GSELRRPLGIAIVGGLLVSQMLTLYTTPVVYLFLDRLRLRWVR 1023


>gi|255021502|ref|ZP_05293546.1| acriflavin resistance protein [Acidithiobacillus caldus ATCC 51756]
 gi|254969030|gb|EET26548.1| acriflavin resistance protein [Acidithiobacillus caldus ATCC 51756]
          Length = 1023

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 64/607 (10%), Positives = 145/607 (23%), Gaps = 41/607 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I  +G +        Q  +   P+                    L   
Sbjct: 9   RRPVATTVLAFAILILGTV-----GYFQLPVALLPNVSFPTV---------AVSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +          +    +ITL F           +V+  +  
Sbjct: 55  SPRTMANSVATPLERQFTSIPGINSMTAVSQNGSTRITLQFNLGVSATAATQEVSDAVAD 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D  +   V       + +L                     +   ++       
Sbjct: 115 AQGLLPSDLPQPPKVRNINPSAAPILF-LAATAPDMPLSRLDRYAQTRVATELATIPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P  L     +   +                             
Sbjct: 174 SVQLFGAKTYAVRIYVNPFALSSRGLSLQDLQTAIAD--------------------ANV 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                +    T      ++   +                        
Sbjct: 214 DLPQGTIEGSRDNIETDVHGQLHTAAAFNRLTIAYVHGHAVPLQAVARAHNSTEYNEQQT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   S          +   L A +       V   +      +   
Sbjct: 274 WFDTTPAIGMAIIREPGSSTVAISRAVREMLPRLEAAAPGGAKLHVLFDDADYIRAAVHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A+ + LV  V+++ +      ++   +I  +++ T  +L LLG ++   ++  + 
Sbjct: 334 VLLTLALSSLLVAGVMWIFLRRFWATVIGALAIPFSLLGTFLVLWLLGYSINTLTLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  +++ E I       +    +   G      TI    ++  I ++ L F G
Sbjct: 394 LAVGFVVDDAVVMLENINRHLDWGEEGRQAALEGSREISFTILSMTLSLAIISLPLLFLG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+ + IL+S   A+S+  A+    +R                     +
Sbjct: 454 GFVGHLFTAFGVTIAVVILVSGLVALSVTPALAARFLRRDSAGVDSGFQRLFNRSRDAYV 513

Query: 539 AIQFMRARFWGVG---ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                  R          +    C +            +  G I + V     +  + V+
Sbjct: 514 RSLAWSLRHKLWILGLAGLTLVGCFVLTAAVPKSFLPTEQNGLINVNVDYPPGMSFAEVK 573

Query: 596 SNLESLQ 602
              E++ 
Sbjct: 574 KEQEAIA 580



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 61/152 (40%), Gaps = 7/152 (4%)

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           +A +++I++R  W   +GA   +   +  T     L G   N   + A+   +G+ V+D 
Sbjct: 345 VAGVMWIFLRRFWATVIGA-LAIPFSLLGTFLVLWLLGYSINTLTLLALTLAVGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
           VV+ + +    +        R    +   E     +  +++  I  LP+   GG V    
Sbjct: 404 VVMLENIN---RHLDWGEEGRQAALEGSREISFTILSMTLSLAIISLPLLFLGGFVGHLF 460

Query: 796 -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +F + +A  I+V+   ++ +   +       
Sbjct: 461 TAFGVTIAVVILVSGLVALSVTPALAARFLRR 492



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 63/155 (40%), Gaps = 7/155 (4%)

Query: 682  IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + + I ++ +   L  +T L L     L F  L  +  +L +   ++ L+G    + +++
Sbjct: 864  VVLAILYEHFLHPLTILTALPLAAFGALLFLYLLHLPLDLYSFIGIIMLLGLVKKNGIIL 923

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGS--VIGSF 797
             D     +      ++  + I  + +      + T++AA + VLP+A+ +G         
Sbjct: 924  LDFA---ITRRRDGLTAEEAIVDACSVRFRPIMMTTIAAILGVLPIAIGFGTGSSSRVPL 980

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             + +  G++ +   ++++     + +        R
Sbjct: 981  GVAVVGGLIFSQFLTLYVTPAFYVVMDGLHDLPKR 1015


>gi|218690134|ref|YP_002398346.1| multidrug efflux system subunit MdtC [Escherichia coli ED1a]
 gi|254810280|sp|B7MWY9|MDTC_ECO81 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|218427698|emb|CAR08605.2| multidrug efflux system, subunit C [Escherichia coli ED1a]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDDTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G  +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGAVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|323977763|gb|EGB72849.1| AcrB/AcrD/AcrF family protein [Escherichia coli TW10509]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTICASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQS 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 61/163 (37%), Gaps = 8/163 (4%)

Query: 673 VIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +IIS   +++ +++  +     +     + + +  T     L G   N  ++ A+    G
Sbjct: 338 LIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAV 788
           + V+D +VV + +    +     +       +   E     +  S++        L M  
Sbjct: 398 FVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|284922070|emb|CBG35149.1| multidrug resistance protein [Escherichia coli 042]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRTKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G S    T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTSEVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQS 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRTKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +  +E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTSEVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|330816093|ref|YP_004359798.1| Multidrug resistance protein MdtC [Burkholderia gladioli BSR3]
 gi|327368486|gb|AEA59842.1| Multidrug resistance protein MdtC [Burkholderia gladioli BSR3]
          Length = 1102

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 74/583 (12%), Positives = 155/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL   +   +       FP+                    L    
Sbjct: 10  RPIATTLLALGIALSGLFAFVRLPVSPLPQVDFPTIS--------------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +        +      +I L F   R  +  A  V   +   
Sbjct: 56  PDTVATSVTSPLERHLGSIADVTEMTSTSSVGSARIILQFGLDRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++    +    +                +   E   +
Sbjct: 116 RADLPASLKSNPTYKKVNPADSPIMV-LAVTSDTASPARLYDAASTVLQQALSQIEGIGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P  L         +       N +                    
Sbjct: 175 VDVSGSANPAVRIELEPHALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N          D+                ++   +  + +  +
Sbjct: 217 --KGAIEYGPAHYQLYTNDQASQASQYRDLVIAYRNNAAVRLDDVGSVVDSVEDLRNVGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +    ++        L AG                   S +  
Sbjct: 275 ANGKKAVLVILYRSPGANIIDAVDRVKASLPQLTAGMPADVDVAPVLDRSRTIRASLTDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+F+ +   +  L+   ++ +++I T   + LLG +L   S+  +++
Sbjct: 335 EHTLLIAVGLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSLDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +++ +   + +     
Sbjct: 395 ATGFVVDDAIVVLENISRHIESGKPRLQAAFEGAREVGFTVLSISLSLVAVFLPILLMSG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+F ++++   M   ++     K  +             + 
Sbjct: 455 IVGRLFREFALTLSLAIFVSLFVSLTLTPMMCARLLPEHDPKREEGRVGRWLERGFARLQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +     W +    L  +  +  +  + L Y    KG     
Sbjct: 515 RGYDVTVVWALRHPRLIILSLVATVALNVLLYVKIPKGFFPQQ 557



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +  + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAVGLVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSLDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +   +         +   E     +  S++     LP+ +  G 
Sbjct: 399 VVDDAIVVLENI---SRHIESGKPRLQAAFEGAREVGFTVLSISLSLVAVFLPILLMSGI 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           V      FA+ ++  I V+   S+ +  
Sbjct: 456 VGRLFREFALTLSLAIFVSLFVSLTLTP 483



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 50/117 (42%), Gaps = 6/117 (5%)

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            F  EF +  +  V+ LIG    + +++ D   +  +      S  D I ++        +
Sbjct: 968  FKTEFGIIGLIGVILLIGIVKKNAIMMVDFAIEATRQ---GRSSFDAIHEACRLRFRPIM 1024

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             T+MAA +  LP+A     G  +     I +  G++V+   +++    + L++   R
Sbjct: 1025 MTTMAAMLGALPLAFGHGDGAELRAPLGIAIVGGLIVSQVLTLYTTPVVYLYMDRIR 1081


>gi|170769765|ref|ZP_02904218.1| multidrug resistance protein MdtC [Escherichia albertii TW07627]
 gi|170121379|gb|EDS90310.1| multidrug resistance protein MdtC [Escherichia albertii TW07627]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K +            ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQTRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   S+++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSEASTAIDRAMTQLGVPSSVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|16130016|ref|NP_416580.1| multidrug efflux system, subunit C [Escherichia coli str. K-12
           substr. MG1655]
 gi|89108896|ref|AP_002676.1| multidrug efflux system, subunit C [Escherichia coli str. K-12
           substr. W3110]
 gi|170081706|ref|YP_001731026.1| multidrug efflux system, subunit C [Escherichia coli str. K-12
           substr. DH10B]
 gi|238901266|ref|YP_002927062.1| multidrug efflux system, subunit C [Escherichia coli BW2952]
 gi|3025165|sp|P76399|MDTC_ECOLI RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|226700691|sp|B1X7H2|MDTC_ECODH RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|259495550|sp|C4ZSG4|MDTC_ECOBW RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|1736785|dbj|BAA15932.1| multidrug efflux system, subunit C [Escherichia coli str. K12
           substr. W3110]
 gi|1788391|gb|AAC75137.1| multidrug efflux system, subunit C [Escherichia coli str. K-12
           substr. MG1655]
 gi|22038189|dbj|BAC06609.1| multidrug transporter [Escherichia coli]
 gi|169889541|gb|ACB03248.1| multidrug efflux system, subunit C [Escherichia coli str. K-12
           substr. DH10B]
 gi|238861824|gb|ACR63822.1| multidrug efflux system, subunit C [Escherichia coli BW2952]
 gi|260448823|gb|ACX39245.1| acriflavin resistance protein [Escherichia coli DH1]
 gi|315136710|dbj|BAJ43869.1| multidrug efflux system subunit MdtC [Escherichia coli DH1]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       I             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVII---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|144900821|emb|CAM77685.1| multidrug resistance protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 1024

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 75/676 (11%), Positives = 186/676 (27%), Gaps = 45/676 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L  ++   G++        Q  +   P+                    L   
Sbjct: 9   RRPIATLLLTLVMVFGGIV-----GWRQLPVASLPNVDFPTI---------SVSASLSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +   S +        +  Q    ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVAAPLEREFSTIAGLETITSTSGQGSTSITLQFVLDRDIDAAAQDVQAAITR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              + V+    +    +             + ++       
Sbjct: 115 AQRRLPEEMTTPPSFRKVNPSDAPVVL-LALSSPTTPLATLDDYAQTILLPRLSRLSGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  + +P  L        ++S      N++    +      + +  +  
Sbjct: 174 QVLVYGSQKFAVRIQLNPDALASRGIGVDELSSAIKAANSNSPLGVLNGPKQQLTLQSNA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +      + +                                  N+   +       
Sbjct: 234 QLPNAAAFGELAIA--------------------WRDGAPVRLKDVANVLDSVENNRTAS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         + + +    ++    L   ++    P     V      +   +   
Sbjct: 274 WFNGTRAIVLAVQRQPEANTVQVVDDVRALMPTIKDSLPPTVDVQVMNDRSRSIRDAIVD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T AI   LV++V+FM +      L+   ++ ++++ TL  +SLLG +L   S+ G+ 
Sbjct: 334 VQFTFAITIALVVMVIFMFLRRLSATLIPTIAMPVSLVATLGAMSLLGFSLDNISLLGLT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I+       + F +   G      TI    ++ +   + +   G
Sbjct: 394 LSVGLVVDDAIVMLENIQRHVDDGMTPFDAALKGAREIGFTILSITVSLVAVFIPILLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDINPLSRF 531
              G     FA+ + L+I IS   ++++   M    +R +         + ++    +  
Sbjct: 454 GVIGRMFHEFAVVVTLAIGISGLVSLTLTPVMCARWLRPEHDTQAGPVERGLERGFNTLL 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +                      I         +  +  G I +   A + +  
Sbjct: 514 AFYQRSLDWVLGHGLSMLALGIATIVATVILFREVPKGFFPTEDTGQIFIQTEAAQDISF 573

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + +    + +     +        + +         +  +  V  + + +   +  +   
Sbjct: 574 AAMAEEQKRMAAIVGADPYVATVTSAVGVSGLSNAANSGRMFVNLVARDQRPGVEQVIGQ 633

Query: 652 QNTEIVGPKISRELIR 667
              +  G       I 
Sbjct: 634 LRKKTAGNPAISVFIT 649



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 78/212 (36%), Gaps = 13/212 (6%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV--- 671
                 +        A T  +    + +   +  S     ++         IR  IV   
Sbjct: 276 NGTRAIVLAVQRQPEANTVQVVDDVRALMPTIKDSLPPTVDVQVMNDRSRSIRDAIVDVQ 335

Query: 672 ---GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
               + I+ + M+I++++R +    L     + + +  TLG  +L G   +  ++  +  
Sbjct: 336 FTFAITIALVVMVIFMFLR-RLSATLIPTIAMPVSLVATLGAMSLLGFSLDNISLLGLTL 394

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  V+D +V+ + +    +     ++  D   K   E     +  +++     +P+ +
Sbjct: 395 SVGLVVDDAIVMLENI---QRHVDDGMTPFDAALKGAREIGFTILSITVSLVAVFIPILL 451

Query: 789 WGGS---VIGSFAIPMAFGIVVAASSSIFIAA 817
            GG    +   FA+ +   I ++   S+ +  
Sbjct: 452 MGGVIGRMFHEFAVVVTLAIGISGLVSLTLTP 483



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 92/241 (38%), Gaps = 6/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +  +             +   V + +     +A  +  + ++    E+   + I +  
Sbjct: 783  DAVAEIGRTVGPLTINHQSQLPAVTIAFNLAPDIALGQAADRIRTIQAEMGMPAGITSNF 842

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                K+ ++ +    + ++ + + + + + + ++     +  ++ L       L    LF
Sbjct: 843  AGTAKVFQQSLSNQGILLLAAVVVIYVILGVLYESLIHPVTILSGLPSAAVGALATLMLF 902

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              E ++ A+  +L LIG    + +++ D   +        +     I ++        + 
Sbjct: 903  RQELSVIAMIGILMLIGIVKKNAIMMIDFALE--AQRNQGLDPHQAIRQACLLRFRPIMM 960

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+MAA +  LP+A+       +     + +  G+VV+ + +++I   + ++    R + +
Sbjct: 961  TTMAAIMGTLPIALGHGAAAELRQPLGLSVVGGLVVSQALTLYITPVLYVWFERLRQRLS 1020

Query: 832  R 832
            R
Sbjct: 1021 R 1021


>gi|110642286|ref|YP_670016.1| multidrug efflux system subunit MdtC [Escherichia coli 536]
 gi|191170086|ref|ZP_03031640.1| multidrug resistance protein MdtC [Escherichia coli F11]
 gi|300981666|ref|ZP_07175652.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 200-1]
 gi|331658155|ref|ZP_08359117.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli TA206]
 gi|122958229|sp|Q0TG14|MDTC_ECOL5 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|110343878|gb|ABG70115.1| putative resistance protein [Escherichia coli 536]
 gi|190909602|gb|EDV69187.1| multidrug resistance protein MdtC [Escherichia coli F11]
 gi|300307467|gb|EFJ61987.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 200-1]
 gi|315299485|gb|EFU58736.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 16-3]
 gi|324013875|gb|EGB83094.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 60-1]
 gi|331056403|gb|EGI28412.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli TA206]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDDTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G  +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGAVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|325000197|ref|ZP_08121309.1| preprotein translocase subunit SecF [Pseudonocardia sp. P1]
          Length = 333

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 67/321 (20%), Positives = 134/321 (41%), Gaps = 15/321 (4%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L     ++  +  +        +     +  L   G N GIDF GG Q+ +
Sbjct: 4   PERTSGWTRLTTGTASVDIVGRKKLWYIGFGVLLAVCVLSLVFRGFNLGIDFTGGSQIQL 63

Query: 584 LANR---PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVL 635
            A     P+ +  V      +           G  +    +      +  Q       + 
Sbjct: 64  PATGANGPISVEQVDRIYTDVVGTAPEVSQAVGTGDLASIVLQSEPLTPEQLVPLREALF 123

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           + ++      VP     +   V      E+  + ++ +++  + + I++ + F+   A  
Sbjct: 124 QQLQPIGGGGVPSEAAISDSQVSGTWGGEVTTQALIALLVFIVLVTIFLAVYFERAMAAA 183

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTT 753
           A+  LI DI  T G +++ G+E     V  +LT++G+S+ D VVV+D++R+N +  L  T
Sbjct: 184 ALVALINDIVVTAGVYSIIGLEVTPATVIGLLTILGFSLYDTVVVFDKVRENSRGLLKLT 243

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVA 808
             S+ +  ++++N+TL RS+ TS+ A + VL + V      G   +   A+    G++  
Sbjct: 244 RRSYAEAANQALNQTLMRSMNTSLIAILPVLGLLVIGVGLLGVGTLADLALVQLVGMISG 303

Query: 809 ASSSIFIAAPILLFIYDWRAK 829
             SS+ +A P+L+ I     +
Sbjct: 304 VVSSLLLATPVLVDIKMRDGR 324


>gi|320198767|gb|EFW73367.1| Multidrug transporter MdtC [Escherichia coli EC4100B]
          Length = 1025

 Score =  154 bits (388), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 166/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++    + +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVVVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVVVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|330447245|ref|ZP_08310895.1| acrB/AcrD/AcrF family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491436|dbj|GAA05392.1| acrB/AcrD/AcrF family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 1025

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/609 (11%), Positives = 160/609 (26%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  +I  +G          +  + ++P                         
Sbjct: 9   RRPVLAISISLLIALLGFQAIF-----KMQVRQYPEMTNTVVT---------VSTAYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +                + IT+    +         V   +  
Sbjct: 55  SADLMQGFITQPLEQAIAQADNIDYITAQSTLGMSTITVQMKLNTNPNAALADVLAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T  +  ++        + S   + +  I R    Q+       
Sbjct: 115 VRSQLPTETQDPTITLSTGGDTGVLYLGFTSKSLNSS--QITDYIERVVKPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP ++     + + +       N           F+  +     
Sbjct: 173 KVDMYGGVPYALRVWLDPQKMAAFNLSASDVIQVLKANNYQSAVGQVNNDFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +                      +       +         +    +      
Sbjct: 233 QSNSPETLE--------------------KLVVTSKDGQVTRLGDIAKVTLSKSSDSYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +          L   +           V   +  A   S   
Sbjct: 273 SANGQEAVVAAIQAAPSANPINIAADVIKLLPTIERNMPSTIKMTVMYDSTIAINDSIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L+++    ++ L G +  L ++  +V
Sbjct: 333 VIKTILEAAVIVLVVIALFIGSLRSVLIPIITIPLSLVGVALVMQLFGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    I        +   G
Sbjct: 393 LAIGLVVDDAIVVLENVERHMKMGESPFRAAIIGTREIAIPVISMTIALGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ IS   A+++   M            K  +++          
Sbjct: 453 GLTGSLFKEFALTLAGAVFISGIIALTLSPMMCAHFLKENAAPNKFEQAVHRFLDRLTLR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           V     F+       F        +  G +     A    +L  
Sbjct: 513 YEKMLGGIMNMRPVVIVFAVCAFASLPFLFKFIPSELAPAEDNGVVVFQGNAPSNANLDF 572

Query: 594 VRSNLESLQ 602
           +  ++  + 
Sbjct: 573 IEDSMNQVN 581



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 81/242 (33%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     +   L  +     S             E            + +     +  + 
Sbjct: 244 VVTSKDGQVTRLGDIAKVTLSKSSDSYRASANGQEAVVAAIQAAPSANPINIAADVIKLL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
             I   +P +              + I + I  ++ +A+ +L+ I +        L  I 
Sbjct: 304 PTIERNMPSTIKMTVMYDSTIAINDSIHEVIKTILEAAVIVLVVIALFIGSLRSVLIPII 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +        LFG  +NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSLVGVALVMQLFGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---ERHMKMGESPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++A      P+A+ G   GS+   FA+ +A  + ++   ++ +
Sbjct: 421 RAAIIGTREIAIPVISMTIALGAVYAPIALMGGLTGSLFKEFALTLAGAVFISGIIALTL 480

Query: 816 AA 817
           + 
Sbjct: 481 SP 482



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 66/177 (37%), Gaps = 7/177 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             +   +G           +     ++   + + + I+F+     L  + ++ L I   L 
Sbjct: 830  YSYNYLGESRQYVTEGNALYATFGLALAVIFLVLAIQFESLRDPLVILVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TLIG      +++ +  ++    +  +    + + ++    L
Sbjct: 890  ALAWGATTLNIYSQIGLITLIGLITKHGILICEVAKEEQLFHGKNR--LEAVMEAAKIRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  F+
Sbjct: 948  RPILMTTCAMIAGLIPLLYASGAGAASRFSIGIVIVAGLSIGTLFTLFVLPVIYTFL 1004


>gi|325963415|ref|YP_004241321.1| protein translocase subunit secF [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323469502|gb|ADX73187.1| protein translocase subunit secF [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 341

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 60/288 (20%), Positives = 133/288 (46%), Gaps = 13/288 (4%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            + W +  ++  ++  I  +   G N GI+F+GG +  V   +  D ++    +  +  G
Sbjct: 24  KKIWFIIAAVGVALSIIIPVAKGGFNLGIEFRGGSEFTVSNVQTTDAALGEKAVTDVVPG 83

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            +            ++      D +     L + +   +          +  VGP    +
Sbjct: 84  SVPRVANVAGTTMRIQT-----DKLTDDETLRIKEGLTSAYGVTDDEVTSTFVGPTWGAD 138

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           + ++ ++G++I  +   + + + F+ W  +L AI  + + +  T G +AL   E   +A+
Sbjct: 139 VTKQALIGLVIFVLLAAVLMALYFRTWKMSLSAIAGMAVTMFITAGVYALSDFEVTPSAI 198

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSMAAFI 781
              LT++ YS+ D VVV+D++R+N       T  +F + ++ ++N+TL RS+ T M A +
Sbjct: 199 IGFLTVLSYSLYDTVVVFDKIRENTADLDASTRRTFAEEVNLAVNQTLVRSINTMMVAIL 258

Query: 782 SVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            V  +        G   +   ++ +  GI++  +++IF+AAP+  ++ 
Sbjct: 259 PVGAILFIGAGLLGAGTLRDLSLALFVGILIGTAATIFVAAPMYAWLR 306


>gi|300777731|ref|ZP_07087589.1| cation efflux protein [Chryseobacterium gleum ATCC 35910]
 gi|300503241|gb|EFK34381.1| cation efflux protein [Chryseobacterium gleum ATCC 35910]
          Length = 1062

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/668 (9%), Positives = 188/668 (28%), Gaps = 39/668 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++L++++   G+L            +  P                    V    
Sbjct: 9   KRPSLVIVLFTILTLGGILS-----YTLMGYELIPKFETNMVT---------ISTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++    L+       S  +  + I +   D    +   +     +  
Sbjct: 55  SPAEVETSVTRKIEDAVGSLENVKKVESSSYESLSVIMVQLNDGADVDYALNDAQRKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D K   L   +  ++ I+    + D++  ++ +    + ++            
Sbjct: 115 ILADLPEDVKAPSLNKFSLDDLPIITMSISSDKL--NSKDLYDLLDKKIEPIFSRVNGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D  +L+    +   +    +  N          R  +       
Sbjct: 173 QVDLVGGQEREIQVNLDEKKLQGYGLSIGDVQQAILSSNLDFPTGSLKTRTTK------- 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                + +SG + +           + + ++        +        +      V    
Sbjct: 226 ---STIRLSGKYKSI----------EEMNNLVVSNKNGAQVRLSDIATVFDSQKDVEKVA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                         ++  +     E+    +  +  A  +      +        L S +
Sbjct: 273 RFNQFPTILMQVKKQSDANAVAVSESVQKTIKTVEEAYKVQGVKVKIVNDTTEFTLESAN 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV IV+ + +   +   +   SI  +++     ++L+G TL L S+ G+
Sbjct: 333 HVIFDLFLAIILVAIVMLLFLHSIRNAFIVMVSIPASLVAAFIGMNLMGYTLNLMSLLGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I       +S   +   G S    T+    +  ++  + +   
Sbjct: 393 SLVVGILVDDAIVVLENIYRHMEMGKSKIRAAYDGASEIGFTVAAITLVIVVVFLPIAMS 452

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G      A    ++++I+   ++     ++ ++                F         
Sbjct: 453 SGLVANILAQ-FCVTVVIATLLSLLASFTIIPWLSSRFGKLEHLTGKN-WFEKFILWFEG 510

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              +   W  GI       ++  + T  + + +     + +            +      
Sbjct: 511 LIDKFTHWITGILEWCLKTTLRRISTVVITFLVLISSFMLVAFGFIGGEFFPPIDRGQFL 570

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           +Q+        +      + ++    +      ++  V ++ T             V   
Sbjct: 571 VQMELSKDATVEKTNQLTLEVEKFLRNDKDVVDLITTVGQQSTGFGGAQATTYQSEVQVN 630

Query: 661 ISRELIRK 668
           ++ +  R 
Sbjct: 631 LTDKSERS 638



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 83/254 (32%), Gaps = 10/254 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V  +    +   + ++E +   +         K           +SV +T        K
Sbjct: 252 QVRLSDIATVFDSQKDVEKVARFNQFPTILMQVKKQSDANAVAVSESVQKTIKTVEEAYK 311

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +  +        TE      +  +     + +I+ AI ML+++        A   + ++ 
Sbjct: 312 VQGVKVKIVNDTTEFTLESANHVIFD-LFLAIILVAIVMLLFL---HSIRNAFIVMVSIP 367

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
             +        L G   NL ++  +  ++G  V+D +VV + +    +      S     
Sbjct: 368 ASLVAAFIGMNLMGYTLNLMSLLGLSLVVGILVDDAIVVLENI---YRHMEMGKSKIRAA 424

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAP 818
               +E        ++   +  LP+A+  G   +++  F + +    +++  +S  I   
Sbjct: 425 YDGASEIGFTVAAITLVIVVVFLPIAMSSGLVANILAQFCVTVVIATLLSLLASFTIIPW 484

Query: 819 ILLFIYDWRAKNAR 832
           +            +
Sbjct: 485 LSSRFGKLEHLTGK 498



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 84/265 (31%), Gaps = 11/265 (4%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                ID    +       + V LS             +  ++         +   +P   
Sbjct: 771  NRQSIDDVKNLMFTNPQGQQVRLSQFADVKMGSGPSLLERRDKSPSVKVRAKAVGRPVGD 830

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIR 687
            VA     + +K     +              +    L     + ++ + + + L+ + + 
Sbjct: 831  VANEWADKFMKSDKKPVGVDYIWSGDMENQQEGFGTL----GIALLAAIVLVYLVMVSLY 886

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              + +    + ++ L +   +   AL     N+  +  ++ LIG    + +++ D     
Sbjct: 887  DSFVYPFVVLFSIPLAMIGVMVILALTANSLNIFTMLGMIMLIGLVAKNAILIVDF---T 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                    +  D + ++ +  L   + T++A    +LP+A+    G  +    A  +  G
Sbjct: 944  NARKAAGANTHDALVQANHARLRPILMTTIAMIFGMLPIALATGAGAEMNKGLAWVVIGG 1003

Query: 805  IVVAASSSIFIAAPILLFIYDWRAK 829
            +  +   ++ I   +         +
Sbjct: 1004 LTSSLFLTLIIVPVVYSLFDSLLRR 1028


>gi|146282528|ref|YP_001172681.1| RND efflux transporter [Pseudomonas stutzeri A1501]
 gi|145570733|gb|ABP79839.1| probable RND efflux transporter [Pseudomonas stutzeri A1501]
 gi|327480785|gb|AEA84095.1| RND efflux transporter [Pseudomonas stutzeri DSM 4166]
          Length = 1026

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 62/551 (11%), Positives = 155/551 (28%), Gaps = 38/551 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMVAILLAGLIA-----YKLLPVAALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +     + ITL F+     +    +V   + G 
Sbjct: 56  PEVMTSAVTAPLERQFGQMPGLAQMSSTSSGGASVITLRFSLDVALDVAEQEVQAAINGA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N+ L  D     +        + VL+   +        +    +  +   ++        
Sbjct: 116 NNLLPNDLPAPPVYNKVNPADTPVLT-LAVTSESLPLPKLHDLVDTRMAQKLAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +P  L     + A +       N ++    F              
Sbjct: 175 VSIAGGQRPAVRIRTNPEALAAYGLSLADVRSLITSSNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   KT +   ++                +I            
Sbjct: 224 ---------TRVSMLDANDQLKTPEEYAELILTYQDGAALRLKDVADIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +E    L   ++A        +V          +    
Sbjct: 275 ANDSQAVLLNIQRQPGANVIEVVERIQALLPEVKASMPAGLDVVVLTDRTQTIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      ++   ++ L+++ T A++ L G +L   ++  + +
Sbjct: 335 QHELMLATFLVVMVTFVFLKKLSATVIPSIAVPLSLVGTFAVMYLCGFSLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENIARHLEEGETPLNAALKGARQIGFTLISLTFSLIAVLIPLLFMQD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++   +     + + R         
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCAKLLKPHSVAEAKPDWVERLIGGYSRWL 514

Query: 540 IQFMRARFWGV 550
              +R +   +
Sbjct: 515 TWVLRHQTLTL 525



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++ + + +++      K    +     + L +  T     L G   N   + A+    G+
Sbjct: 339 MLATFLVVMVTFVFLKKLSATVIPSIAVPLSLVGTFAVMYLCGFSLNNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +      +  +   K   +     +  + +    ++P+      
Sbjct: 399 VVDDAIVMLENI---ARHLEEGETPLNAALKGARQIGFTLISLTFSLIAVLIPLLFMQDV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FAI +A  I+++   S+ +  
Sbjct: 456 VGRLFREFAITLAVAILISLVVSLTLTP 483


>gi|119944249|ref|YP_941929.1| acriflavin resistance protein [Psychromonas ingrahamii 37]
 gi|119862853|gb|ABM02330.1| acriflavin resistance protein [Psychromonas ingrahamii 37]
          Length = 1033

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/648 (10%), Positives = 175/648 (27%), Gaps = 40/648 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G L        +  +   P                      E  
Sbjct: 9   KRPVMAIVLSLLLCVFGSLS-----FSKLSIREMPDVESPVVT---------VMTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +          R   ++I+++FA           V   ++ 
Sbjct: 55  AATIMESQVTSVIENQITGISGIEDLRSVTRNGMSRISITFALDWNLTEGVSDVRDAVEK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    N         + +  + R   D+  +     
Sbjct: 115 AKRFLPDEATDPIVSKNNGSGEAAMYVNINST--TMDRTQLTDYVKRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  + DP+ +     T++ +       N                     
Sbjct: 173 SITLSGGLNQVMYVKLDPALMAGRGVTSSDIVDALKRENMESPAGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA    +       +          +      +           
Sbjct: 219 -----VRNDTTVMSVRTARLYQEPQDFDYLVVRTANDGSAVYLKEVAEVYIGAENESSSF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++ ++     +        ++          V          S S 
Sbjct: 274 KNNGIVNISLGIIPQSDVNPLAVAQAVYREVDKIQPFLPEGARLAVNYDATVFVDRSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I A LV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYYTLFITAALVILVLYIFIGQVRATLIPAITVPVSLISSFIAAYYFGFSINLITLMAMI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  + +  ++  + + F G
Sbjct: 394 LAIGLVVDDAIVVVENIFHHIEKGEPPLLAAFKGTREVGFAVVATTLVLVMVFLPISFMG 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP--D 536
           G        FA+ + ++++ S   A+++   +   I+  K   +       R F      
Sbjct: 454 GMVGLLFTEFAVLLAMAVIFSSIVALTLTPVLASKILTSKTKANRFNRLTERLFESMEAR 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I F   +F      ++ +           +   +       +     +  + +    
Sbjct: 514 YRKIVFTTMQFRYAAPLVILACVGGSFFLFQQVPAQLTPSEDRGVLFAFIKGAEGTSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              ++ I +       G+          P            V   + +
Sbjct: 574 MTTNMDIVEARLLPLLGKGVIKSFSTQAPAYGGNAGDQTGFVIMILED 621



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 92/260 (35%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   E     +    +F       + L   P   V    V + V +
Sbjct: 243 LVVRTANDGSAVYLKEVAEVYIGAENESSSFKNNGIVNISLGIIPQSDVNPLAVAQAVYR 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ +I P         V    +  + R        + +  + + +++YI+I  +    L 
Sbjct: 303 EVDKIQPFLPEGARLAVNYDATVFVDRSISEVYYTLFITAALVILVLYIFI-GQVRATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  +      FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAITVPVSLISSFIAAYYFGFSINLITLMAMILAIGLVVDDAIVVVENI---FHHIEKGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     V T++   +  LP++  GG V      FA+ +A  ++ ++  +
Sbjct: 419 PPLLAAFKGTREVGFAVVATTLVLVMVFLPISFMGGMVGLLFTEFAVLLAMAVIFSSIVA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   I   + K  R
Sbjct: 479 LTLTPVLASKILTSKTKANR 498



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 697  ITTLILDITKTLGFFALFGIE--FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +    + +    GF  L+ ++   N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMFTVPMGVLGGFLGLYFMDQGLNVYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            I F   I  +    L   + T+       +P+ +    G     +    + FG+  A   
Sbjct: 937  IEFEQAIIDASARRLRPILMTAFTTLAGSVPLILSTGAGSESRIAVGTVVFFGMAFATLV 996

Query: 812  SIFIAAPILLFI 823
            ++ I   +   I
Sbjct: 997  TLIIIPAMYRLI 1008


>gi|111023848|ref|YP_706820.1| preprotein translocase subunit SecD [Rhodococcus jostii RHA1]
 gi|110823378|gb|ABG98662.1| protein-export membrane protein [Rhodococcus jostii RHA1]
          Length = 556

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 112/526 (21%), Positives = 202/526 (38%), Gaps = 24/526 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FV 66
           L      + +L AL            P         LG+DL+GG+ + L     D     
Sbjct: 14  LTVFAVLVAVLYAL--VFFTGDKSATP--------KLGIDLQGGTRVTLTARTPDGSKPT 63

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              L+   + + + +   G+    +    + + ++                    V    
Sbjct: 64  PDSLRQAQEIIETRVNGLGVSGSEVVIDGDNLVITVP-GDDSAQARSLGQTARLYVRPVQ 122

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISH-----AIEQSMEIIRQRIDQIGISESTI 181
                            +   +    +          A + S         +   ++++ 
Sbjct: 123 TSQAAAPAGTQAPAAGGTPAQAPAGTETPAPQNRPFPAQDPSTSPEPTPTAEPAPADASG 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    I        S    +           V                  +DG   
Sbjct: 183 TETAEAADEIAAARATRQSTDPAVQQQAMATLDCSVPDPLRGNDDPALPLVACSTDGQAV 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +   I G  +  AT+ ++ +  +  V ++F   G+  +   T  NIGK  A  LD +
Sbjct: 243 YLLEPAIIDGQEIADATSGYNSQQSRHEVSLTFKSEGSNTWATFTSQNIGKQAAFTLDSK 302

Query: 302 VLTAPVINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           V++APV+  A P      I+G+F+ E+A  LA  L+ GSLP+     E   V A LG  S
Sbjct: 303 VVSAPVVQGATPAGSSTSITGSFSAESAKELANTLKYGSLPLSFAASEAETVSATLGLAS 362

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPS 416
           +  G  A + GLVL++L+ ++ Y   G++   S+ L+ ++  A++ LL      TL L  
Sbjct: 363 LEAGLIAGLVGLVLVLLYCLLYYRMLGVLTALSLVLSGVMVYAIMVLLGRYINFTLDLAG 422

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG+++GIG+  DS ++  ERI++E R+ +S   ++  G++RA  TI   N  + IA  V
Sbjct: 423 IAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWARARRTILSGNAVSFIAAAV 482

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           L+    G VRGFA T+GL+ ++ +     +   ++    +      
Sbjct: 483 LYILAVGQVRGFAFTLGLTTILDVVVVFLVTWPLVHLASKSPFWSK 528



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 692 FALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +    +L+L          L G       +L  +A ++  IG + +  VV ++R++  
Sbjct: 388 LGVLTALSLVLSGVMVYAIMVLLGRYINFTLDLAGIAGLIIGIGMTADSFVVFFERIKDE 447

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SFR  + +         +  +  +FI+   + +     +  FA  +    ++
Sbjct: 448 MRE---GRSFRSAVPRGWARARRTILSGNAVSFIAAAVLYILAVGQVRGFAFTLGLTTIL 504

Query: 808 AASSSIFIAAPIL 820
                  +  P++
Sbjct: 505 DVVVVFLVTWPLV 517


>gi|37679313|ref|NP_933922.1| putative multidrug resistance protein [Vibrio vulnificus YJ016]
 gi|37198056|dbj|BAC93893.1| putative multidrug resistance protein [Vibrio vulnificus YJ016]
          Length = 1037

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 65/651 (9%), Positives = 182/651 (27%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      +  
Sbjct: 9   KRPVAALVLSLLLCVFGFVS-----FSKLAVREMPDIESPVV---------SISTRYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPIVFKNNGSGEASVYINLSSSE--MDRTQLTDYIERVLMDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T   ++      N    G                
Sbjct: 173 SVDISGGLYKVMYVKLSPELMAGRGVTATDITAALRSENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDQTVMSVRTARSYNSVEDFQYLVVKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGVVNVSMGIVPQSDANPLEVAKRVHEEVDKVQKFLPEGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   I++    K+   + +   F   +  
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSKILKANVKKNRFNDVVDVLFGKLESG 513

Query: 539 AIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               ++    +  +   I+ +         + +   +  +    +     R  D +    
Sbjct: 514 YRALLKRALAWRWLAPVIILACMGGSYALMNQVPAQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MSANMDLVEERLMPLLGQGFLKSFSIQSPAFGGQAGDQTGFVIMILDDWNE 624



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 88/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDNTPIYLKDVADVFIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQKFLPEGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQARATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  +      FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIEKGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
           S      K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 SPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   I     K  R
Sbjct: 479 LTLTPVLGSKILKANVKKNR 498



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 48/143 (33%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        +     N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLLIMQQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
            +L      F   I  +    L   + T+       +P+ +  G       +    + FG+
Sbjct: 931  QLRDRGFEFEQAIIDASARRLRPILMTAFTTLAGAIPLILSDGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
              A   ++F+   +   I  +  
Sbjct: 991  GFATLVTLFVIPAMYRLISRYTE 1013


>gi|205353270|ref|YP_002227071.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|226700681|sp|B5RBW8|MDTB_SALG2 RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|205273051|emb|CAR37999.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326628359|gb|EGE34702.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 1040

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAD 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRKLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|154494967|ref|ZP_02033972.1| hypothetical protein PARMER_04013 [Parabacteroides merdae ATCC
           43184]
 gi|154085517|gb|EDN84562.1| hypothetical protein PARMER_04013 [Parabacteroides merdae ATCC
           43184]
          Length = 1042

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 73/641 (11%), Positives = 176/641 (27%), Gaps = 47/641 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +++  I   GL       L +  +D  P       +                 
Sbjct: 9   KKPVTTALVFVAIVIFGLFS-----LTRLSVDLLPEIETNTIM---------VMTSYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +          R+  + ITL F      +   + V   L  
Sbjct: 55  SAADIEMNVSKPLENVLNSVSDLKHITSQSRENISIITLEFDYGTDIDVATNDVRDKLDV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D    ++      +I I++     ++  +   +       +  + +       
Sbjct: 115 AEPMLPDDVDNPIIFKFGTNDIPIIILSVTAEESTNALYKILD---DKVSNPLARISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++    DP +L     +   +S      N +  G    +     +   Q 
Sbjct: 172 AVSISGTPAREIQVYCDPYKLEAYGVSIEGISAIIAQENRNTPGGSVDIGSNAYALRVQG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D  ++  + +                         +  +      I   +       
Sbjct: 232 EFTDAHQMDDLVIG--------------------HKNNKTIYLRDVARIEDSIEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        ++          V        L +   
Sbjct: 272 YNNGKKGGMIVIQKQSGANSVNIAKKVHQKLPEIQKSLPSDVKLGVIMDTSTNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  I   +V++V+F+ +   +   +   +I +++I + A L   G TL + S++ + 
Sbjct: 332 LKETIFITFIIVMLVVFVFLGRWRATFIIILTIPISLIASFAYLLASGNTLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG+ VD  I+V E I     +  +   +     +    ++  S +T L   + L    
Sbjct: 392 IAIGMVVDDAIVVLENITTHIERGSAPKQAAVHATNEVAISVIASTLTMLAVFLPLTMVT 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI-------DINPLSRF 531
              G   +     + + +++S   A+++   +   ++R    K          I      
Sbjct: 452 GMAGILFKQLGWIVSIIMIVSTVGALTLTPMLSSLLLRQNPKKGRLYTLFFTPIEKALDA 511

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                   + +       V            LL           +   Q+ V    PV  
Sbjct: 512 LDRGYSSFLYWAVRHRKTVIFGATLIFAGSMLLVPTIKTEFFPTQDNAQISVHIELPVGT 571

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               +   +L+I ++  Q +   K           D+    
Sbjct: 572 RQDITRKLALEIDELFRQKYPEIKTSNFTEGQADSDNTWAQ 612



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 99/281 (35%), Gaps = 7/281 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +   L   G          + +G   N+ + L  V    +S++       N   +  
Sbjct: 220 IGSNAYALRVQGEFTDAHQMDDLVIGHKNNKTIYLRDVARIEDSIEERAQETYNNGKKGG 279

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +V  +    +SV   + +     +I + +P        +         I      + I+
Sbjct: 280 MIVIQKQSGANSVNIAKKVHQKLPEIQKSLPSDVKLGVIMDTSTNILNTIDSLKETIFIT 339

Query: 677 AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I +++ +++   +W      I T+ + +  +  +    G   N+ +++++   IG  V+
Sbjct: 340 FIIVMLVVFVFLGRWRATFIIILTIPISLIASFAYLLASGNTLNIISLSSLSIAIGMVVD 399

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI 794
           D +VV + +           + +     + NE     + +++      LP+  V G + I
Sbjct: 400 DAIVVLENI---TTHIERGSAPKQAAVHATNEVAISVIASTLTMLAVFLPLTMVTGMAGI 456

Query: 795 --GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                   ++  ++V+   ++ +   +   +     K  R+
Sbjct: 457 LFKQLGWIVSIIMIVSTVGALTLTPMLSSLLLRQNPKKGRL 497



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 89/247 (36%), Gaps = 12/247 (4%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              +L  +            ++  ++ +    G   A + ++   + ++ E+   S +   
Sbjct: 791  IRDLGKVVERMTPPTIERKDRERVITVSAVVGKGAAMSDIVTAARNQLKEMDIPSDVSWQ 850

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                 +   +      + +++  I + I +  +F+        + ++    T  +   A+
Sbjct: 851  LGGTYEDQMDTFFDLTILMVLIIILVFIVMAAQFESLTDPFVIMFSIPFAFTGIILGLAI 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                  + A+  ++ L+G  V + +V+ D     +      +     +  +    L   +
Sbjct: 911  TQTPLGVMALIGLIMLMGIVVKNGIVLID---YTILCRERGMGILTAVVTAGKSRLRPVL 967

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI-----YD 825
             T++   + ++PMAV    G  +  S  + +A+G+ V+   ++ I   +           
Sbjct: 968  MTTLTTVLGMIPMAVGTGEGSEMWRSMGMTVAWGLSVSTLITLVIVPVVYSVFAGNGVRR 1027

Query: 826  WRAKNAR 832
             R K A+
Sbjct: 1028 RRRKMAK 1034


>gi|27366421|ref|NP_761949.1| RND multidrug efflux transporter [Vibrio vulnificus CMCP6]
 gi|27362622|gb|AAO11476.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Vibrio vulnificus CMCP6]
          Length = 1037

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 65/651 (9%), Positives = 182/651 (27%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      +  
Sbjct: 9   KRPVAALVLSLLLCVFGFVS-----FSKLAVREMPDIESPVV---------SISTRYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPIVFKNNGSGEASVYINLSSSE--MDRTQLTDYIERVLMDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T   ++      N    G                
Sbjct: 173 SVDISGGLYKVMYVKLSPELMAGRGVTATDITAALRSENLESPG---------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA            +          +     ++           
Sbjct: 217 ---GQVRNDQTVMSVRTARSYNSVEDFQYLVVKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGVVNVSMGIVPQSDANPLEVAKRVHEEVDKVQKFLPEGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   I++    K+   + +   F   +  
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSKILKANVKKNRFNDVVDVLFGKLESG 513

Query: 539 AIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               ++    +  +   I+ +         + +   +  +    +     R  D +    
Sbjct: 514 YRALLKRALAWRWLAPVIILACMGGSYALMNQVPAQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MSANMDLVEERLMPLLGQGFLKSFSIQSPAFGGQAGDQTGFVIMILDDWNE 624



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 88/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDNTPIYLKDVADVFIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQKFLPEGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQARATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  +      FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIEKGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
           S      K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 SPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   I     K  R
Sbjct: 479 LTLTPVLGSKILKANVKKNR 498



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 48/143 (33%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        +     N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLLIMQQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
            +L      F   I  +    L   + T+       +P+ +  G       +    + FG+
Sbjct: 931  QLRDRGFEFEQAIIDASARRLRPILMTAFTTLAGAIPLILSDGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
              A   ++F+   +   I  +  
Sbjct: 991  GFATLVTLFVIPAMYRLISRYTE 1013


>gi|148258142|ref|YP_001242727.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           BTAi1]
 gi|146410315|gb|ABQ38821.1| Putative component of multidrug efflux pump, acrB/acrD/acrF family
           [Bradyrhizobium sp. BTAi1]
          Length = 1051

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 82/687 (11%), Positives = 175/687 (25%), Gaps = 48/687 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   IC IG +       P   + ++P   P               + +    
Sbjct: 8   RPIFAWVVALFICLIGAIAI-----PLLAVAQYPIIAPP-------------SISISTSY 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L       +   L            S    Q +IT +F       + + +V  
Sbjct: 50  PGASPENLYNSVTRLIEEELNGASGILNFESTSDSLGQVEITANFVPGTSTNDASVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L+ V ++L     +  ++        + +            I     +IR  + +I   
Sbjct: 110 RLKRVEARLPRAVIQQGILVEEASAAVLQIITLQSTDGSLDEIGLGDFMIRNVLGEIRRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP++L     T   ++      N        G        
Sbjct: 170 PGVGRATLY-STERSLRVWLDPNKLIGYGLTADDVTKAIGAQNAQVASGSIGAEPATTVQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV  K ++                 +    +                 I       
Sbjct: 229 RTSALVLVKGQL-------------DSPDEFGSIMLRANPDGSTVRLRDVARIEIGGLSY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T          L           +          
Sbjct: 276 QFNTRLNGKPTAGLSVLLSPTGNALATASAIEAKMKELSRFFPSNISYEIPYDITPVVKA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ ++    + + ++ T A L L+G ++ + ++
Sbjct: 336 SIKRVLMTLVEAVVLVFVVMFLFLQNIRYTIIPTIVVPVALLGTCATLMLVGYSINMLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+VL +G+ VD  I+V E +      +  S   +      +    I    +  +   V 
Sbjct: 396 FGMVLAVGILVDDAIVVVENVERIMAEEGLSPKEATRKAMGQITGAIIGITLVLMAVFVP 455

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDIN 526
           + FF G      R F++TM  +I  S   A+S+  A+   +++  +              
Sbjct: 456 MAFFPGSVGIIYRQFSVTMVAAIGFSALLALSLTPALCATLLKPVQAGHGHARTGLFGWF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                       ++        G  + I              L  G              
Sbjct: 516 NRFMDGSRNRYTSVVGGALTRTGRLMLIYAIFLVGLTYAFIQLPGGFLPVDDQGFITTDV 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +    S       +++  +      +G ++      +        T    +  K  +E  
Sbjct: 576 QTPADSSYARTQAAVEAVEKYLAKREGIEDVTFLTGFSYAGQGVNTAQAFISLKDWSERG 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV 673
              +         +    L    I  +
Sbjct: 636 KQDSAAALVADINRDLASLRDAKITAL 662



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/139 (15%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + +     + + +  T     L G   N+  +  ++  +G  V+D +VV + +     
Sbjct: 362 IRYTIIPTIVVPVALLGTCATLMLVGYSINMLTMFGMVLAVGILVDDAIVVVENV--ERI 419

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
           +    +S ++   K++ +  G  +  ++      +PMA + GSV      F++ M   I 
Sbjct: 420 MAEEGLSPKEATRKAMGQITGAIIGITLVLMAVFVPMAFFPGSVGIIYRQFSVTMVAAIG 479

Query: 807 VAASSSIFIAAPILLFIYD 825
            +A  ++ +   +   +  
Sbjct: 480 FSALLALSLTPALCATLLK 498



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 76/195 (38%), Gaps = 8/195 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELI-RKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            + + +       L      E  G  +  +L   +  + + +SA+ + + +   ++ W   
Sbjct: 834  DALNEMERLAANLPRGFGYEWTGQSLQEKLSGSQAPLLLGLSALVVFLCLAALYESWTIP 893

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  + T+ L I   +    L G+  ++    A++T+IG +  D +++ +  +    L   
Sbjct: 894  LAVLLTVPLGILGAVVAANLRGLSNDVYFTVALITIIGLAAKDAILIIEFAKD---LRAH 950

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                 +   ++ +      + T +A    VLPM++    GG+   +    +  G++    
Sbjct: 951  GKPLVEATIEACSLRFRPIIMTGLAFVCGVLPMSMATGAGGASQQALGTNVMGGMIAVVV 1010

Query: 811  SSIFIAAPILLFIYD 825
             ++ +     + +  
Sbjct: 1011 LALLMVPVFFVSVQR 1025


>gi|90423162|ref|YP_531532.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
 gi|90105176|gb|ABD87213.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
          Length = 1026

 Score =  154 bits (388), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 73/543 (13%), Positives = 166/543 (30%), Gaps = 29/543 (5%)

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                  + + GF+    ++  +  +       S  Q Q+ I++    +        +V 
Sbjct: 50  TYPGASPELMQGFITTPIEQAVAAAEGVDYMTSSSTQGQSLISVYIKLNVDPNQALTEVL 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V   +  +    +++ +T +  +++      +++   AI  S  + R     +  
Sbjct: 110 SKVNSVKYLIPKEANDPVILKSTGQTTAVMYIGFASEELSGSAI--SDYLTRVVQPIMST 167

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +              +    DP R+     +   +S      N           F+   
Sbjct: 168 VDGVASADILGGQTFAMRIWLDPVRMAGRGVSPDDISAAIRANNFQSAAGQTKGYFI--- 224

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                            ++  TAN D +  +    ++                +      
Sbjct: 225 -----------------VSNVTANTDLQNVEQFKRMTVKAKDGGFVRMEDVATVELSAQS 267

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                  +             Q +    +     L   +     P     V   +     
Sbjct: 268 TDASVAFSGEHAIFIGVQATPQGNPLNIVTGVRKLFPEIERNLPPSLKMKVAYDSTKFIR 327

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    + T     G+V++V+F+ +   +  ++   +I L++I   +L+ ++G ++ L +
Sbjct: 328 SSIDEVEKTLIEAIGIVVVVIFLFLASFRSVIIPVVTIPLSLIGVCSLMMVMGFSINLLT 387

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  +VL IGL VD  I+V E I     + +S   +   G       +    IT       
Sbjct: 388 LLAMVLAIGLVVDDAIVVVENIHRHLEEGKSPVQASLQGAREIVGPVISMTITLAAVYAP 447

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G   R FA T+  S+++S   A+++   M   ++R            + F  
Sbjct: 448 IGFLGGLTGSLFREFAFTLAGSVIVSGVIALTLSPMMCSVLLRPHDQSWFGKKVDAVFSA 507

Query: 534 IPDCIAIQFMR----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                  Q  R         +    +  +       T       + +G +   V A +  
Sbjct: 508 CTRWYGRQLDRSLDYRPVTALFAVAILFLVGFLYQNTSKELAPEEDQGILFAVVKAPKYA 567

Query: 590 DLS 592
           ++ 
Sbjct: 568 NID 570



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/314 (10%), Positives = 104/314 (33%), Gaps = 15/314 (4%)

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
             AM I++   +              +  +       + + + +  ++  +     +   
Sbjct: 181 TFAMRIWLDPVRMAGRGVSPDDISAAIRANNFQSAAGQTKGYFIVSNVTANTDLQNVEQF 240

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +       G +++  +A   +      +++       I        +   + +     
Sbjct: 241 KRMTVKAKDGGFVRMEDVATVELSAQSTDASVAFSGEHAIFIGVQATPQGNPLNIVTGVR 300

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                 ++   +++ +   + +    ++         E+ +  I  + I  + + +++  
Sbjct: 301 ------KLFPEIERNLPPSLKMKVAYDSTKFIRSSIDEVEKTLIEAIGIVVVVIFLFLA- 353

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +   +  + T+ L +        + G   NL  + A++  IG  V+D +VV + +  
Sbjct: 354 --SFRSVIIPVVTIPLSLIGVCSLMMVMGFSINLLTLLAMVLAIGLVVDDAIVVVENIH- 410

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
             +      S      +   E +G  +  ++       P+   G   GS+   FA  +A 
Sbjct: 411 --RHLEEGKSPVQASLQGAREIVGPVISMTITLAAVYAPIGFLGGLTGSLFREFAFTLAG 468

Query: 804 GIVVAASSSIFIAA 817
            ++V+   ++ ++ 
Sbjct: 469 SVIVSGVIALTLSP 482



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 61/158 (38%), Gaps = 6/158 (3%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + +  + I + + +  +F+     L  + ++ + I+  L          N+     +LTL
Sbjct: 848  ITMGFALIIIFLVLAAQFESLRDPLVILISVPMAISGALIPLFFGVATINIYTQVGLLTL 907

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-V 788
            IG      +++ +  R+        +  R  I+ +    L   + T+ A    +LP+   
Sbjct: 908  IGLISKHGILMVEFARE--LQLNEGLDKRSAIEMAARVRLRPILMTTAAMVTGLLPLLTA 965

Query: 789  WGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIY 824
             G      F+I +    G+ +    ++F+   + + I 
Sbjct: 966  SGAGAASRFSIGLVVVSGMSIGTLFTLFVLPAVYVAIG 1003


>gi|326319375|ref|YP_004237047.1| acriflavin resistance protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323376211|gb|ADX48480.1| acriflavin resistance protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 1025

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 77/613 (12%), Positives = 175/613 (28%), Gaps = 39/613 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN     +L+ ++   GLL           +  FP       +             L   
Sbjct: 9   RNPIPAAMLFVLLTFAGLLS-----FRAMKVQNFPDMDLPVVM---------VTAALPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   +  +       ++      I   +   +  +   D V   +  
Sbjct: 55  APGQLETDVARKIENAIATTQGLKHITTTLVDGTATIAAEYRLEKPVQEAVDDVRSAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + +  D +  ++         I+      D++   A   S  +      ++       
Sbjct: 115 VRADMPADLRDPIVTKLELSSQPILAFAIASDRMDDQA--LSWFVDDTLTRRLLAVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    DP RL+ L  T A +S    L                       
Sbjct: 173 AVSRVGGVQREVRVAIDPLRLQSLGATAADVSRQLRL-------------------VQTE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               + ++ G      T        +          G           +   +A      
Sbjct: 214 SAGGRTDLGGAEQPVRTIATVRTAQEIAALDIPLSAGGH-VRLDRIATVTDTVAEPRTAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     S     S              L A    + L       V    G    
Sbjct: 273 LLDGKPVIGFEVSRSRGASEVEVGAGVQRALDQLVAEHPDLHLTR-TVDFVEIASGEYDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+++ +   +  +V+  ++ L+V+     + LLG ++ + ++  + 
Sbjct: 332 SMRLLYEGAILAVIVVWLFLRNWRATIVSAVALPLSVLPAFIGMYLLGFSINIITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R +++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEVENIVRHLRMDKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G   R F    G +  +++F ++ + R +   +  Y            R+       +  
Sbjct: 452 GIPGRFFKQ-FGWTAALAVFASLVVARLLTPMMAAYILKPLSGEEKEPRWLSAYMRASAW 510

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSNLES 600
            +R R   +  ++LF   SI L+      +   D     Q+ +       ++  R+ +  
Sbjct: 511 ALRHRVLTLLGALLFFAGSIALIPLLPSGFIPPDDNAQTQVNLELPPGTRIAETRAAVAQ 570

Query: 601 LQIGDISFQNFDG 613
                +   +   
Sbjct: 571 ATERAMKVGHVRS 583



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 79/253 (31%), Gaps = 10/253 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + + A   V L  + +  +++     +              + +    V     ++    
Sbjct: 245 IPLSAGGHVRLDRIATVTDTVAEPRTAALLDGKPVIGFEVSRSRGASEVEVGAGVQRALD 304

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           ++    P   +  T       S E      +    + +A+++       W   + +   L
Sbjct: 305 QLVAEHPDLHLTRTVDFVEIASGEYDSSMRLLYEGAILAVIVVWLFLRNWRATIVSAVAL 364

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +        L G   N+  + A+  ++G  V+D +V  + +   ++      +    
Sbjct: 365 PLSVLPAFIGMYLLGFSINIITLLALSLVVGILVDDAIVEVENI---VRHLRMDKTPYQA 421

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             ++ +E     + T+       LP A   G        F    A  +     +S+ +A 
Sbjct: 422 AMEAADEIGLAVIATTFTLIAVFLPTAFMSGIPGRFFKQFGWTAALAV----FASLVVAR 477

Query: 818 PILLFIYDWRAKN 830
            +   +  +  K 
Sbjct: 478 LLTPMMAAYILKP 490



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 77/185 (41%), Gaps = 3/185 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
              +     V E V++  +     ++++  ++   ++  EL     + ++   + + + +
Sbjct: 803 ELGTQGLGEVTEAVRQLPSVRQKPASVRLIDVGDAEMMGELFASFGLAMLTGVVCIYLVL 862

Query: 685 WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
            + FK +   +  +  L L +        + G  F++ ++  ++ L+G +  + +++ + 
Sbjct: 863 VLLFKDFLQPVTILMALPLSLGGAFVGLLIAGKSFSMPSLIGLIMLMGIATKNSILLVE- 921

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
               +      +   D +  + ++     + T++A    +LP+A+  G    SF  PMA 
Sbjct: 922 -YAIVARRDQGMGRWDALLDACHKRARPIIMTTLAMGAGMLPIAMAWGGADMSFRSPMAV 980

Query: 804 GIVVA 808
            ++  
Sbjct: 981 AVIGG 985


>gi|167629625|ref|YP_001680124.1| acrb/acrd/acrf family protein [Heliobacterium modesticaldum Ice1]
 gi|167592365|gb|ABZ84113.1| acrb/acrd/acrf family protein [Heliobacterium modesticaldum Ice1]
          Length = 1039

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/547 (10%), Positives = 152/547 (27%), Gaps = 49/547 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++      +GL         +  ++  P+                  + ++V 
Sbjct: 9   KRPAGISMIVLFFVVLGLYS-----FNRIGVELLPAMNTPF-------------VTVQVS 50

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++       +E  S + K              + L F  S   +     VT 
Sbjct: 51  YPGAAAEDVEKQVIEPLEEAVSSVSKLKKLTAMANAGSGFVILEFDLSADPDQAVLDVTK 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  +L  +    +++       +I+    + D +    +E          +++   
Sbjct: 111 KVDAVKGRLPDEANDPVVIKRDINAQAIMTLSVSSDGLSK--LETYKLADEMIQERLKRV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +         ++  E DP +L     +   +       N +K       +   D  
Sbjct: 169 QGVSEIEVYGGRQKEIAVEVDPKKLTVFNVSLNSIVNKIKSENANKPVGKLYRQRDYD-- 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                    + + G + +             + +++                + + +  V
Sbjct: 227 ---------LRLLGEYQSVKE----------IENLAIPSGDGAAVPLKNVATVKEQIKEV 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   L            ++  S     +        LR     + + +           
Sbjct: 268 RNMTRLNGEESVGIEIFKQSDSSVVDVGKGLNAEIEKLRKELPGVTIYV-ANDASDYVQK 326

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +  + +           LF  +   +  +    +I  ++I  + ++ L   T  + S+
Sbjct: 327 ALNNTQMSIFEGIVTTAFALFFFLKEWRSMVTVLIAIPTSLISVIFVMYLFDFTFNMMSL 386

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM---GFSRAYSTIFDSNITALIAT 474
            G+ L IG+ VD +I+V E I       +    +          A   I   ++   +  
Sbjct: 387 MGMALCIGILVDDSIVVLENIHRHLTMGKDARTAARDGRGEIGMAAIAITLCDVVVFLPI 446

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             +    G   R F +T+  + L S+F + ++   +   + +    +             
Sbjct: 447 AFMEGMVGQFFRQFGLTIVFATLFSLFVSFTVTPMLSSRLYKKGFEEKHHPIWERVDRFG 506

Query: 535 PDCIAIQ 541
                + 
Sbjct: 507 GRVRNLY 513



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 77/241 (31%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +  E ++      +    E   +   +      V   + L    +K+ + +P 
Sbjct: 252 VPLKNVATVKEQIKEVRNMTRLNGEESVGIEIFKQSDSSVVDVGKGLNAEIEKLRKELPG 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            TI         + + L    +              +   +W   +  +  +   +   +
Sbjct: 312 VTIYVANDASDYVQKALNNTQMSIFEGIVTTAFALFFFLKEWRSMVTVLIAIPTSLISVI 371

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               LF   FN+ ++  +   IG  V+D +VV + +    +  T     R        E 
Sbjct: 372 FVMYLFDFTFNMMSLMGMALCIGILVDDSIVVLENIH---RHLTMGKDARTAARDGRGEI 428

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              ++  ++   +  LP+A      G     F + + F  + +   S  +   +   +Y 
Sbjct: 429 GMAAIAITLCDVVVFLPIAFMEGMVGQFFRQFGLTIVFATLFSLFVSFTVTPMLSSRLYK 488

Query: 826 W 826
            
Sbjct: 489 K 489



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 74/214 (34%), Gaps = 21/214 (9%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIW 685
            +       +  V++KI                 +   +   + +  + +S I + ++ + 
Sbjct: 814  NDRPLQEFISEVQQKIKARHFDPLYSIKMAGQAQNMNDTFSQMLSALGLSLILVYMVLVV 873

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS-------VNDKV 738
            +   +      + +L L     +   AL     NL ++  ++ + G         ++  +
Sbjct: 874  LYESFLTPFIRMFSLPLGFIGAVVALALTKNSLNLFSMMGIIMMDGLVAKNGTLLLDYAL 933

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVW-GGSVIG 795
             + DR              R+ I ++    L   V T+M     +L   +A+  G     
Sbjct: 934  TLMDR----------GFKPREAIIEAGKTRLRPIVMTTMTMVFGMLPTALAIAEGAENRV 983

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              A  +  G++ +   ++ I   I + ++ W+ K
Sbjct: 984  GMAWVLIGGLLSSTFFTLIIIPIIFIAMHRWKDK 1017


>gi|225158973|ref|ZP_03725285.1| AcrB/AcrD/AcrF family protein [Opitutaceae bacterium TAV2]
 gi|224802468|gb|EEG20728.1| AcrB/AcrD/AcrF family protein [Opitutaceae bacterium TAV2]
          Length = 1040

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 63/516 (12%), Positives = 142/516 (27%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   G+            + ++P                         
Sbjct: 11  RRPVLAIVVSLVILIAGI-----QAYKTLTVRQYPRMDDSTIT---------VTTAYVGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    +   +          +  Q  + I +    +        +++  +  
Sbjct: 57  SAELVRGFITTPLERSIAAADGIDYIESTSSQGVSSINVRLKLNYDPNKALSEISARVNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  ++   +                     E +  + R    ++   E   
Sbjct: 117 VRGDLPPEAELPVINIQSTDSQFASAY-LRFTSNTLQRNEITDYLTRVVQPRLSTVEGVQ 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  + A++       N                 G   
Sbjct: 176 KADILGARTFAMRIWLKPDRMASLNISPAQVRAALASNNYLSA------------VGATK 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++      +   F         ++   E            ++           
Sbjct: 224 GALIQVNLTANTDLRSVEEFR--------NLVLREQDGAIVRLSDIASVSLGAEDYDADV 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +    ++        +           +          +   
Sbjct: 276 RFSGESAVFIGVFPLPTANSLDVVKRIKHEMDDIVQNLPTGLEGGIAYDATAYIQDAIDE 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V+IV+F+ +   +  LV   +I +++I  + L+   G TL L ++  +V
Sbjct: 336 VFHTLGETMLIVVIVIFLFMGSFRTVLVPVIAIPISLIGAIFLMQAFGFTLNLLTLLAVV 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E I     + +S   +  +G     S I    IT       +   G
Sbjct: 396 LSVGLVVDDAIVVVENIERHMSQGKSPLDAALLGARELVSPIISMTITLAAVYAPIGLQG 455

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R FA T+  ++ IS   A+++   M   +
Sbjct: 456 GLTGSLFREFAFTLAGAVTISGVVAVTLSPMMSAKL 491



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 69/187 (36%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
            ++ + + +   +      +          E+       ++I  I + +++     +   
Sbjct: 305 EMDDIVQNLPTGLEGGIAYDATAYIQDAIDEVFHTLGETMLIVVIVIFLFMG---SFRTV 361

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  +  + + +   +     FG   NL  + AV+  +G  V+D +VV + +    +  + 
Sbjct: 362 LVPVIAIPISLIGAIFLMQAFGFTLNLLTLLAVVLSVGLVVDDAIVVVENI---ERHMSQ 418

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             S  D       E +   +  ++       P+ + G   GS+   FA  +A  + ++  
Sbjct: 419 GKSPLDAALLGARELVSPIISMTITLAAVYAPIGLQGGLTGSLFREFAFTLAGAVTISGV 478

Query: 811 SSIFIAA 817
            ++ ++ 
Sbjct: 479 VAVTLSP 485



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 62/177 (35%), Gaps = 21/177 (11%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE-------- 717
             K +   +++ I + + +  +F  +      +   +         F +  +         
Sbjct: 844  NKFLPAFVLAVILIFLVLAAQFNSFRDPFVILAGSVPLAMFGALIFTVLKMPNPNLHYFT 903

Query: 718  ------FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
                   N+ +   ++TLIG    + ++V +       L     S  D I ++       
Sbjct: 904  DGWTTTINIYSQVGLVTLIGLVAKNGILVVEFAN---HLQLEGRSKIDAIREAARTRFRP 960

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + T++A  +   P+ +    G +   S  I +  G+ + +  ++FI   + + I  
Sbjct: 961  VMMTTVATVVGHFPLVLVTGAGAAARNSIGIVIVAGMAIGSLFTLFIVPSLYVLIAK 1017


>gi|306814801|ref|ZP_07448963.1| multidrug efflux system subunit MdtC [Escherichia coli NC101]
 gi|305852195|gb|EFM52647.1| multidrug efflux system subunit MdtC [Escherichia coli NC101]
          Length = 1025

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGQLYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVIDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFATMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K +            ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPRKQTRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 73/218 (33%), Gaps = 7/218 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFATMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             FA+ ++  I ++   S+    P++       +K  +
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPRK 497



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRMRFSR 1017


>gi|209919540|ref|YP_002293624.1| multidrug efflux system subunit MdtC [Escherichia coli SE11]
 gi|218554643|ref|YP_002387556.1| multidrug efflux system subunit MdtC [Escherichia coli IAI1]
 gi|300818926|ref|ZP_07099131.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 107-1]
 gi|300821819|ref|ZP_07101964.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 119-7]
 gi|300955099|ref|ZP_07167503.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 175-1]
 gi|307138734|ref|ZP_07498090.1| multidrug efflux system subunit MdtC [Escherichia coli H736]
 gi|309792955|ref|ZP_07687383.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 145-7]
 gi|331642696|ref|ZP_08343831.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli H736]
 gi|331668772|ref|ZP_08369620.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli TA271]
 gi|226700690|sp|B7M459|MDTC_ECO8A RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|226700693|sp|B6HYS1|MDTC_ECOSE RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|209912799|dbj|BAG77873.1| putative transport protein [Escherichia coli SE11]
 gi|218361411|emb|CAQ98998.1| multidrug efflux system, subunit C [Escherichia coli IAI1]
 gi|300317942|gb|EFJ67726.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 175-1]
 gi|300525661|gb|EFK46730.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 119-7]
 gi|300528545|gb|EFK49607.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 107-1]
 gi|308123241|gb|EFO60503.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 145-7]
 gi|323940853|gb|EGB37041.1| AcrB/AcrD/AcrF family protein [Escherichia coli E482]
 gi|331039494|gb|EGI11714.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli H736]
 gi|331063966|gb|EGI35877.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli TA271]
 gi|332343858|gb|AEE57192.1| multidrug transporter MdtC [Escherichia coli UMNK88]
          Length = 1025

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 166/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++    + +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVVVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVVVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|182679835|ref|YP_001833981.1| acriflavin resistance protein [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635718|gb|ACB96492.1| acriflavin resistance protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 1044

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 77/540 (14%), Positives = 159/540 (29%), Gaps = 46/540 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRIS---LGLDLRGGSHLV 57
           R     ++L   +  +GLL        Q  +   P+  MP   I+    G D        
Sbjct: 9   RRPIGTILLSIGLFLVGLL-----GYTQLPVASLPNVEMPTININASRPGAD-------- 55

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +   +    +     +                I   F  SR  +  A  V  
Sbjct: 56  -----PVIMAESVAAPIERRLGEIAGLTELTSVSALGSTNIVAQFDLSRNIDGAARDVQA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L    + L  D              + +L    +      A     +       +I   
Sbjct: 111 ALNAAQTDLPSDLPNLPSFRKFNPAAAPILI-LALTSDTIPASTIYDQTDTIVAQRISQI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q + +      +    +P++L  +  +T  +    V  N               S 
Sbjct: 170 EGVSQVVVTGADQPAIRVTINPTQLSAMGLSTENIRTAIVNANALSPTGTLDGNTKAQSI 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G    +    +                      ++             +   I   +   
Sbjct: 230 GTNTQLRKPED--------------------YGNLVVQNTNGNTALLSSVAKIETGVRNT 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L    L        + + +A  +   T++        +           V          
Sbjct: 270 LSAAWLNGKPAVIMVITKQADANVIDTVDRVMAALPNIARWIPADIKISVLNDRTVTIRA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  + T  I  GLV++V+F+ +   +  L A  ++ L +  T AL+ L   ++   S+
Sbjct: 330 SVADMQMTMLITIGLVMLVVFIFLRRWEATLAAGVTVPLALSGTCALMWLAHFSIDNLSL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + + +G  VD  I++ E I        S   +   G      T+   +I+ + A + L
Sbjct: 390 MALAVAVGFVVDDAIVMIENIERNLHAGMSPMQAALTGSKEIGFTVISISISLMAAFIPL 449

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
              G   G   R F++T+  +ILIS   ++++   +  +++R  + +  +    +     
Sbjct: 450 LLMGGLVGRFFREFSLTLAFTILISTVVSLTLTPMICAYLLRPPQERKHNWLDHAFESFF 509



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 80/218 (36%), Gaps = 6/218 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            ++  Q          RV+  +      I     I         I   +    +  +I  
Sbjct: 283 MVITKQADANVIDTVDRVMAALPNIARWIPADIKISVLNDRTVTIRASVADMQMTMLITI 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + ML+      +W   L A  T+ L ++ T     L     +  ++ A+   +G+ V+D
Sbjct: 343 GLVMLVVFIFLRRWEATLAAGVTVPLALSGTCALMWLAHFSIDNLSLMALAVAVGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +V+ + + +N+      +S          E     +  S++   + +P+ + GG V   
Sbjct: 403 AIVMIENIERNLHA---GMSPMQAALTGSKEIGFTVISISISLMAAFIPLLLMGGLVGRF 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              F++ +AF I+++   S+ +   I  ++     +  
Sbjct: 460 FREFSLTLAFTILISTVVSLTLTPMICAYLLRPPQERK 497


>gi|188591326|ref|YP_001795926.1| multidrug efflux system, subunit b [Cupriavidus taiwanensis LMG
           19424]
 gi|170938220|emb|CAP63206.1| multidrug efflux system, subunit B [Cupriavidus taiwanensis LMG
           19424]
          Length = 1040

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 62/558 (11%), Positives = 146/558 (26%), Gaps = 38/558 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           L   P                    +     
Sbjct: 10  RPVATALLMLAILLSGLVA-----YRLLPLSALPEVDYPTIQ---------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F  +   +    +V   +   
Sbjct: 56  PDVMTSSVTAPLERQFGQMPGLKQMSSSSSGGASVITLQFELTLPLDVAEQEVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     + +      + +++   +        +    +  +   +I   +    
Sbjct: 116 SNLLPSDLPMPPVYSKVNPADAPIMT-IAMTSDTMPLPKLQDMVDTRVAQKISQIQGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L  L  +   +       N +     F       +      
Sbjct: 175 VTISGGQRPAVRIQANPTALASLGMSIDDLRTAIGASNVNGAKGSFDGPQRASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                            I                 I            
Sbjct: 235 LRSA--------------------DEYRQIILGYKNGAPIRITDVAEIVDGPENSRLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L+          +          S    
Sbjct: 275 ANDKPAIVLNIQRQPGANVIEVVDRIKALLPQLQNALPASVHVQLLTDRTTTIRASVEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFELLLAIALVVLVIFLFLRNIPATIIPGVAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     K  S   +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIMRYIEKGDSPMQAALKGSKQIGFTIISLTFSLVAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ +SILIS   ++++   M   ++ +   + +     +      + I 
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLHHVPEEKLSRFHRATGRFFDNVIE 514

Query: 540 IQFMRARFWGVGISILFS 557
                  +          
Sbjct: 515 RYGRGLEWVLDRQKATLV 532



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +     + L +  T G   L G   N   + A+    G+ V+D +V+ + +
Sbjct: 351 LFLRNIPATIIPGVAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
              M+      S      K   +     +  + +    ++P+   G   G +   FAI +
Sbjct: 411 ---MRYIEKGDSPMQAALKGSKQIGFTIISLTFSLVAVLIPLLFMGDVVGRLFREFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  I+++A  S+ +  
Sbjct: 468 AVSILISAVVSLTLTP 483


>gi|71900070|ref|ZP_00682213.1| Acriflavin resistance protein [Xylella fastidiosa Ann-1]
 gi|71730152|gb|EAO32240.1| Acriflavin resistance protein [Xylella fastidiosa Ann-1]
          Length = 1071

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 66/553 (11%), Positives = 158/553 (28%), Gaps = 40/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G+L        +  +   P     + +                 
Sbjct: 9   RRPIATSLLMFGVLLLGIL-----GYKKLPMSALPEVDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + ITL F+  +  +  A  V   +  
Sbjct: 55  NAKTMAALVTTPLEHQLGQISGLDMMSSDSSAGLSTITLQFSTHKNLDIAAQDVQAAIHQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +++   +        E +         ++       
Sbjct: 115 AT--LPSTLPHQPIYNRVNPADAAIIT-LKLTSDTLPLRELNTYADAILAQRLSQISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N +        +    S G   
Sbjct: 172 LVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRNTLTQANVNAPKGSLNGKNQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D  +                      D                 N+   +       
Sbjct: 232 QLKDASQ--------------------YRDTIIHYQNGHPVRLSEVANVVDGVENDQISA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A          +   +   T+E    +   LRA         V          S   
Sbjct: 272 WANAKPAVLLEIRRQPGANIIQTVEQIRAILPQLRAVLPNDVHLDVFSDRTETIRSSVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +  GLV+ V+F+ +      L+   ++ L++  T ++++  G +L   S+  +V
Sbjct: 332 VKFTLLLTIGLVVAVIFVFLRRLWATLIPSVAVPLSLAGTFSVMAFNGMSLDNFSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   TI    I+ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA  +  +++ISM  ++++   M  ++++   +   D         +    
Sbjct: 452 GVTGRLFHEFAWVLSTAVVISMLVSLTLTPMMCAYLLKPDTLPEGDSPTQITKITLWTRT 511

Query: 539 AIQFMRARFWGVG 551
              + R   W + 
Sbjct: 512 VALYERTLDWVLM 524



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 90/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  ++  +      +      +   +    +        V L+ +     
Sbjct: 230 NDQLKDASQYRDTIIHYQNGHPVRLSEVANVVDGVENDQISAWANAKPAVLLEIRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-----KGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I  +  +I++
Sbjct: 290 NIIQTVEQIRAILPQLRAVLPNDVHLDVFSDRTETIRSSVHEVKFTLLLTIGLVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   L     + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATLIPSVAVPLSLAGTFSVMAFNGMSLDNFSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S R+  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMPGVTGRLFHEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 466 STAVVISMLVSLTLTP 481



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 91/253 (35%), Gaps = 11/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V   R + LS +     +     IS Q           L      S A   + +   +
Sbjct: 808  MTVGTGRIIPLSALADAKVTNAPRVISHQQQLPAVTISFNLAQGYSLSHAVKAIEQARTQ 867

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                    +      +       ++    +  ++ S + + I + + ++ +   L  I+T
Sbjct: 868  LQIPPQVRAQFIGKAVEFTSSQSDI----VWLLLASIVVIYIVLGVLYESYIHPLTIIST 923

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    L G+  ++ ++  ++ LIG    + +++ D   +     +T  S  D
Sbjct: 924  LPSAGVGALLALMLCGLSLSVDSIVGIVLLIGIVKKNAIMMIDFAIE---ARSTGSSAHD 980

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+ AA +  LP+A+    G  +     I +  G++++   +++  
Sbjct: 981  AIRRACLLRFRPIIMTTAAALLGALPLALSDGIGSELRRPLGITIVGGLLLSQLITLYTT 1040

Query: 817  APILLFIYDWRAK 829
              I LF      +
Sbjct: 1041 PVIYLFFERLSER 1053


>gi|167836107|ref|ZP_02462990.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis MSMB43]
          Length = 1036

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 78/621 (12%), Positives = 172/621 (27%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYHDA--------------VVAYKSGRPVMLTDVAKIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++    +   L+          +          +    
Sbjct: 275 VDAEPAIILNVQRQPGANVIQTVDNIKAILPKLQESLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+               LI   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHTPPPESHRFEAKVHALIDRVIA 514

Query: 540 -------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +  ++ ++  +      +     G IQ    A + V   
Sbjct: 515 RYGLALQWVLDRRRSTLVVAVLTLALTALLYVVIPKGFFPTQDTGVIQAITQAPQSVSYG 574

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    ++L    +   +   
Sbjct: 575 AMAERQQALAAEILKHPDVVS 595



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 92/242 (38%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +   + RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKSGRPVMLTDVAKIVAGSENTKLGAWVDAEPAIILNVQRQPGANVIQTVDNIKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAIVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|260434716|ref|ZP_05788686.1| RND transporter, HAE1 family [Synechococcus sp. WH 8109]
 gi|260412590|gb|EEX05886.1| RND transporter, HAE1 family [Synechococcus sp. WH 8109]
          Length = 1143

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 71/525 (13%), Positives = 145/525 (27%), Gaps = 33/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I  +GL+       P   ++  P   P                     +
Sbjct: 10  KPVLSTVCSLLIVIVGLIAI-----PILPIENLPDIAPPTV---------KVQATYVGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++    I   S     + I++SF            V   +  
Sbjct: 56  AVAIEQGVTSVLEQQINGVENMDFITSNSSSDGVSSISVSFDSGTDGNINQVNVQNRVSL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQIGISE 178
              +L  + +K+ +         +++     +            S  + +   + I   +
Sbjct: 116 AEPQLPEEVRKSGVTVNKASNSILLVYNFVNEDPSTNEYSVETISGYLDKNLTNNIKRVK 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                       I      DP +L         +       N        G     +   
Sbjct: 176 GVGDITYFGNRKIAFRLWLDPEKLSANNLLATDVVNQLRSQNRLVPAGKIGGSPAPEGQE 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             + V+ +  ++                   + +   E G     +          A  +
Sbjct: 236 YTFTVQLQGRLTSTQEFEN------------IILRSTEAGGLVRLKDVGRVELGGEAYGI 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D   L             +  +          + A                        S
Sbjct: 284 DAIDLKGASSVGLAIYQLSGSNAIDVSNGVKDVLAEFEQTLPVGLGVQKIYDTTDFINQS 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 +      LV+++LF+ +   K  LV   +I + +I T A +   G +L   ++ 
Sbjct: 344 IKGVTNSLRDAVILVVLILFLFLQNWKATLVPAIAIPVALIGTFAFVLAFGFSLNQLTLF 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVL 477
           G+VL  GL VD  I V E    +  +  +   +        +   I  S +   +   VL
Sbjct: 404 GLVLATGLVVDDAITVVEDTSAKKAEGMTSVQAAMETMDELFGAVIATSLVKMAVFLPVL 463

Query: 478 FFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           FF G  G   + FA T+  SI IS F A++    +   ++  K  
Sbjct: 464 FFPGATGTIYKQFAATILFSIGISTFNALTFSPMLSALLLSKKTK 508



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 6/143 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T  F   FG   N   +  ++   G  V+D + V +       
Sbjct: 369 WKATLVPAIAIPVALIGTFAFVLAFGFSLNQLTLFGLVLATGLVVDDAITVVE---DTSA 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
                ++      ++++E  G  + TS+      LP+  + G    I   FA  + F I 
Sbjct: 426 KKAEGMTSVQAAMETMDELFGAVIATSLVKMAVFLPVLFFPGATGTIYKQFAATILFSIG 485

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
           ++  +++  +  +   +   + K
Sbjct: 486 ISTFNALTFSPMLSALLLSKKTK 508



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 75/248 (30%), Gaps = 9/248 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            + A    +    +  L        +          L R     G         + +    
Sbjct: 877  LSAYYVANAKGEQIPLSEFFTLKQTVGPSVIPHFNLYRSIKIEGTPKEGNSSGQAISAMK 936

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT 699
                  S              E+    +  VI +   + +++ +      +   +  + T
Sbjct: 937  QVFSQGSFPGLGYDWTGISREEVKAGSLAVVIFALGILAVFLVLSAQYESYTDPIIILLT 996

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +   +   L F    G   N+ A   ++ LIG +  + +++ D      +  +   S  +
Sbjct: 997  VPTALLGALVFLGSAGQVLNIYAQVGLVMLIGLAGGNAILIVD---LANQKMSEGESALE 1053

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                S    L   + T+M++    LP+ +    G     S  + +  G++VA   S  + 
Sbjct: 1054 AAKFSAQSRLRPILMTAMSSLTGFLPLMLASGAGAQSQSSLGLVVFGGLLVATFLSTLVV 1113

Query: 817  APILLFIY 824
                + + 
Sbjct: 1114 PVFYVVMK 1121


>gi|77460883|ref|YP_350390.1| acriflavin resistance protein [Pseudomonas fluorescens Pf0-1]
 gi|77384886|gb|ABA76399.1| putative AcrB/AcrD/AcrF family membrane protein [Pseudomonas
           fluorescens Pf0-1]
          Length = 1033

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 76/592 (12%), Positives = 162/592 (27%), Gaps = 38/592 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               ++L   +  +G++       P+  +   P A                   L     
Sbjct: 15  PVATILLTIALVLVGVIA-----FPRLPIAPLPEAEFPTIQ---------VSAQLPGASP 60

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D +   +    +   S +        S       +TL F   +  +  A +V   +    
Sbjct: 61  DTMASSVATPLEVQFSAIPGMTQMTSSSALGSTLLTLQFTLDKSIDTAAQEVQAAINTAA 120

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            KL  D              S VL   ++        E S  +      QI   +   Q 
Sbjct: 121 GKLPKDMPTLPTWKKVNPADSPVLI-LSVSSTQMPGTELSDLVETLLARQISQIDGVGQI 179

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             + +    +  +    +L  +  T A +                              +
Sbjct: 180 NITGQQRPAIRVQASADKLAAIGLTLADIRVAI--------------------QQTSLNL 219

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                     ++  + N      +    +                 +             
Sbjct: 220 AKGALYGDSSISTLSTNDQLFHPEEYSQLIVSYKDGAPVHLKDVAKVVNGSEDAYVQAWA 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   + S +   +   T++        L A                    S    +
Sbjct: 280 GDRPGVNLVISRQPGANIVETVDRIQAALPGLEAMLPASVQVKTLIDRTQTIRASLHEVE 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T  I   LV+ V+ + +      ++    + +++  + AL+ LLG +L   ++  IV+ 
Sbjct: 340 ITLLIAILLVVAVMALFLRQLSATMIVSAVLGVSLTASFALMYLLGFSLNNLTLVAIVVA 399

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG-- 481
           +G  VD  I+V E I        S+  +   G      T+   + + + A + L F G  
Sbjct: 400 VGFVVDDAIVVVENIHRHLEAGDSMRDAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGV 459

Query: 482 -GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G   + FA+T   +I+IS+  ++++   +    +R     + D    S   L      +
Sbjct: 460 VGRLFKEFALTATSTIMISVVVSLTLAPTLAALFMRKPVHHAHDKPGFSERLLGWYEKGL 519

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +   A    +      S+      +          +    +        D+S
Sbjct: 520 RRALAHQKLMIGVFGISVALAIGGYVFIPKGFFPVQDTGFVLGTTEAAADIS 571



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 89/251 (35%), Gaps = 10/251 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++   + +   + ++          V L             ++ ++  +
Sbjct: 249 IVSYKDGAPVHLKDVAKVVNGSEDAYVQAWAGDRPGVNLVISRQPGANIVETVDRIQAAL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +             ++ +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PGLEAMLPASVQVKTLIDRTQTIRASLHEVEITLLIAILLVVAVMALFLRQLSATMIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +T +     L G   N   + A++  +G+ V+D +VV + +    +      S R
Sbjct: 369 VLGVSLTASFALMYLLGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGDSMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           D   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 DAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATSTIMISVVVSLTL 485

Query: 816 AAPILLFIYDW 826
           A  +       
Sbjct: 486 APTLAALFMRK 496



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 81/203 (39%), Gaps = 6/203 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + ++ +   EI   + I        +  +  ++     ++ + +A+ I + + ++ + 
Sbjct: 822  DAVILLNQAKAEIGMPTAISGNFQGAAQAFQSSLKSQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       +    + G +F++ A+  ++ LIG    + +++ D   +  +  
Sbjct: 882  HPLTIISTLPAAGLGAVIMLWICGQDFSIMALIGLVLLIGIVKKNGILMIDFALEAQRH- 940

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               +S +D I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 941  -RGLSPQDAIFEACITRFRPIIMTTLAALLGALPLMLGYGTGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F    I L++     K  
Sbjct: 1000 QMLTLFTTPVIYLWLERLFHKPK 1022


>gi|295136167|ref|YP_003586843.1| multidrug resistance protein, AcrB/AcrD family protein
           [Zunongwangia profunda SM-A87]
 gi|294984182|gb|ADF54647.1| multidrug resistance protein, AcrB/AcrD family protein
           [Zunongwangia profunda SM-A87]
          Length = 1037

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 63/539 (11%), Positives = 149/539 (27%), Gaps = 39/539 (7%)

Query: 19  LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDEL 77
           +L+A    +    ++RFP   P               + ++V         + +     +
Sbjct: 1   MLLAGAASITSLPVERFPEIAPP-------------SVSVQVYYPGGNAETVAKSVLLPI 47

Query: 78  RSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
              +   E +   +       + ++T+ F      +  A  +   +  + S +  +  + 
Sbjct: 48  EEAINGTENMSYANSTATNSGRGRVTVYFKPGTDPDLAAVDIQNRISTITSMIPTEVSEA 107

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +  T   + SI+      D         +         ++   +   +     +    +
Sbjct: 108 GISVTKRMKGSIMTINIYSDDPTYDETFLNAFTRINIRRELKRVDGLAEASILRQRDYAM 167

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               +P ++     T   +       N       FG                      + 
Sbjct: 168 RIWLNPQKMASYQLTPRDVYNQIKDQNFEAAPGKFGENSEE-----------------LF 210

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                 +      +   ++                 +    +       L          
Sbjct: 211 EIIMKHDGRFSQPEDYENLVIKTKDETSLHLRDIARVEFGASNYTSENRLNGKPSVTIDI 270

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             +   +          +               +          S S  + T      LV
Sbjct: 271 VQQNGANAMEIDSRIREILEEQSRLFPDDVHYEITYSVRNQIDESMSQVEHTLVEAFILV 330

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
            +V+F+ +   +  L+   SI  +++ T   L+++GA++ + S+  +VL IG+ VD  I+
Sbjct: 331 FLVVFIFLQDFRATLITAISIPASLLGTFFFLNIIGASMNVLSMFSLVLAIGIVVDDAIV 390

Query: 434 VNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           V E I E        V  ++          I    +      V + F  G      + FA
Sbjct: 391 VMEAIHEKMTHHKMPVKEAVSSAMDEITGAIISITVVIAAVFVPVGFLSGPVGVFYQEFA 450

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
            T+  ++LIS   A+++   +       K  K                   + +R + +
Sbjct: 451 YTIIFAVLISAINALTLTPVLSKIFFGKKDRKKDKRGIARAISNYRQFRKAKVLRRKGF 509



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 96/264 (36%), Gaps = 10/264 (3%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
            ++   G     +    + +       + L  +              +        +  +
Sbjct: 212 IIMKHDGRFSQPEDYENLVIKTKDETSLHLRDIARVEFGASNYTSENRLNGKPSVTIDIV 271

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
           Q    +++     +  + ++ + + P                E + +    ++ + I + 
Sbjct: 272 QQNGANAMEIDSRIREILEEQSRLFPDDVHYEITYSVRNQIDESMSQVEHTLVEAFILVF 331

Query: 682 IYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           + ++I    +   L    ++   +  T  F  + G   N+ ++ +++  IG  V+D +VV
Sbjct: 332 LVVFIFLQDFRATLITAISIPASLLGTFFFLNIIGASMNVLSMFSLVLAIGIVVDDAIVV 391

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL---PMAVWG--GSVIG 795
            + + + M  +   +  ++ +  +++E  G  +  S+   I+ +      + G  G    
Sbjct: 392 MEAIHEKMTHH--KMPVKEAVSSAMDEITGAII--SITVVIAAVFVPVGFLSGPVGVFYQ 447

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA  + F ++++A +++ +   +
Sbjct: 448 EFAYTIIFAVLISAINALTLTPVL 471



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 6/152 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
             I       +   L  + +L + I        + GI+ N+     ++ LIG    + +++
Sbjct: 881  FILASQYESFLLPLAVMLSLPVGIFGVFTAINIAGIDNNIYVQIGIIMLIGLLAKNSILI 940

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---F 797
             + +    +      +  D + ++    +   + TS+A  + ++P+    GS        
Sbjct: 941  VEFV---AQKRRAGFTAFDAVIEASALRIRPIIMTSLAFTVGLVPLMFAEGSSAQGNHSV 997

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +I  A G++      IFI   +         K
Sbjct: 998  SIGTAGGMISGIVLGIFIIPVLAYVFQVLHDK 1029


>gi|104781762|ref|YP_608260.1| multidrug resistance efflux transporter [Pseudomonas entomophila
           L48]
 gi|95110749|emb|CAK15462.1| multidrug resistance efflux transporter [Pseudomonas entomophila
           L48]
          Length = 1032

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 56/551 (10%), Positives = 146/551 (26%), Gaps = 38/551 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YKMLPVAALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + +TL F+     +    +V   +   
Sbjct: 56  PQVMTSAVTAPLERQFGQMPGLTQMASTSSGGASVLTLRFSLDMNMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 SNLLPSDLPAPPVYNKVNPADTPVLT-LAISSKTMPLPKLNDLVDTRVAQKIAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   L         +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   ++ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLRSPEEYANLILKYNNGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +           V          +    
Sbjct: 275 ANQNEAVLLNIQRQPGANVIEVVDRIKELLPSITDNLPAGLDVSVLTDRTQTIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        LV++V F+ +      ++   ++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QHELLFAIALVVMVTFLFLRRVSATIIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + Q+   +   G  +   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGQTPLQAALKGAKQIGFTLISLTFSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQGRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGV 550
             +  A  W +
Sbjct: 515 KHYASALTWVL 525



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 53/458 (11%), Positives = 137/458 (29%), Gaps = 17/458 (3%)

Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           M +  G    V   ++   +      +  L    +  S    VL +  ++D N+ V E+ 
Sbjct: 48  MTLYPGASPQVMTSAVTAPLERQFGQMPGLTQMASTSSGGASVLTLRFSLDMNMDVAEQQ 107

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
            +      S     D+     Y+ +  ++   L   +         +     T     + 
Sbjct: 108 VQAAINAASNLLPSDLPAPPVYNKVNPADTPVLTLAISSKTMPLPKLNDLVDTRVAQKIA 167

Query: 499 SM----FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554
            +      +I+  +   + I       + +   L     +     +   +  F G     
Sbjct: 168 QISGVGMVSIAGGQRQAVRIKVNVDALAANGLNLDDVRTLIGASNVNQPKGNFDGPTRVS 227

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
           +              N  + +  G  L +     +        L +    + +       
Sbjct: 228 MLDANDQLRSPEEYANLILKYNNGAPLRLKDVAEIVDGAENERLAAWANQNEAVLLNIQR 287

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +     ++           + + +   +   V     Q        +  EL+        
Sbjct: 288 QPGANVIEVVDRIKELLPSITDNLPAGLDVSVLTDRTQTIRAAVRDVQHELL------FA 341

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I+ + M+ ++++R +    +     + L +  T G   L G   N   + A+    G+ V
Sbjct: 342 IALVVMVTFLFLR-RVSATIIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGFVV 400

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +V+ + +    +      +      K   +     +  + +    ++P+       G
Sbjct: 401 DDAIVMLENI---SRHIEEGQTPLQAALKGAKQIGFTLISLTFSLIAVLIPLLFMADVVG 457

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +   FAI +A  I+++   S+ +   +   +     K
Sbjct: 458 RLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495



 Score = 45.8 bits (106), Expect = 0.031,   Method: Composition-based stats.
 Identities = 15/95 (15%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +        +S  D I ++        + T++AA    +P+ +    G  + 
Sbjct: 928  IMMIDFALE--AERHQGMSPHDAIYQAALLRFRPILMTTLAALFGAVPLMLATGSGAELR 985

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                + M  G++V+   ++F    I L+      +
Sbjct: 986  QPLGLVMVGGLLVSQVLTLFTTPVIYLYFDRLARR 1020


>gi|254523251|ref|ZP_05135306.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
 gi|219720842|gb|EED39367.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
          Length = 1077

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/491 (10%), Positives = 141/491 (28%), Gaps = 35/491 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +   P     + +                     +   +    +     +    +
Sbjct: 29  YRKLPVSALPEIDAPSLV---------VTTQYPGANATTMASLVTTPLERQFGQISGLEL 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                    + I L F+  R  +  A  V   ++     L        +        + +
Sbjct: 80  MTSDSSAGLSTIILQFSMDRDIDIAAQDVQAAIRQAT--LPSSLPYQPVYNRVNPADAAI 137

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++   +        + +         ++   +       +  +   +  + +P++L  + 
Sbjct: 138 VT-LKLTSDTRPLRDVNNYADSILAQRLSQVQGVGLVSIAGNVRPAVRIQVNPAQLSNMG 196

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T  ++       N +        +    S G    +    E                  
Sbjct: 197 LTLEQLRSALTQANVNAPKGSLNGKTQSYSIGTNDQLASAAE------------------ 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
               D        R        ++   +                     +   +   T+E
Sbjct: 239 --YRDTIISYKNGRPVRLSDVADVVDGVENDQLAAWADGKPAVLLEVRRQPGANIVQTVE 296

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
               +   L+          +          S    + T  +  GLV+ V+F+ +     
Sbjct: 297 RIRAILPQLQGVLPADVHLEIFNDRTETIRASVHEVQFTLILTIGLVVAVIFVFLRRLWA 356

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            ++   ++ L++  T A+++  G +L   S+  +V+  G  VD  I++ E I     + +
Sbjct: 357 TIIPSVAVPLSLAGTFAVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENIVRYIEQGK 416

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           S   + ++G  +   T+    ++ +   + L       G     FA  + +++++SM  +
Sbjct: 417 SGKEAAEIGARQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLSIAVVLSMLIS 476

Query: 504 ISIVRAMMIFI 514
           +++   M  ++
Sbjct: 477 LTLTPMMCAYL 487



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 88/244 (36%), Gaps = 12/244 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +++ +      +    + +   +        +    V L+ +        + +E ++  
Sbjct: 242 TIISYKNGRPVRLSDVADVVDGVENDQLAAWADGKPAVLLEVRRQPGANIVQTVERIRAI 301

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGA 696
           + ++  +        +    +  +          + + I  +  +I++++R  W   +  
Sbjct: 302 LPQLQGVLPADVHLEIFNDRTETIRASVHEVQFTLILTIGLVVAVIFVFLRRLW-ATIIP 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +   ++      S
Sbjct: 361 SVAVPLSLAGTFAVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI---VRYIEQGKS 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            ++  +    +     +  +++     LP+ +  G        FA  ++  +V++   S+
Sbjct: 418 GKEAAEIGARQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLSIAVVLSMLISL 477

Query: 814 FIAA 817
            +  
Sbjct: 478 TLTP 481



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 88/252 (34%), Gaps = 11/252 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V A   + LS +     S     +S Q           +      S A   + E    
Sbjct: 812  ITVGAGNIIPLSALAEGKVSSAPLVVSHQQQLPAVTVSFNVAPGYSLSEAVRAIQETKDS 871

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                    +              ++    +  ++ S + + I + + ++ +   +  I+T
Sbjct: 872  LDMPTHLHAEFIGKAAEFTGSQTDV----VWLLLASLVVIYIVLGVLYESYIHPITIIST 927

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    L G+  ++  +  ++ LIG    + +++ D   +  +      +  +
Sbjct: 928  LPPAGVGALLALMLCGLSLSVDGIVGIVLLIGIVKKNGIMMVDFAIEARRA---GANAHE 984

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+ AA +  LP+A+    G  +     I +  G++++   +++  
Sbjct: 985  AIRRACLLRFRPIMMTTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTT 1044

Query: 817  APILLFIYDWRA 828
              I L++  +  
Sbjct: 1045 PVIYLYMERFSE 1056


>gi|24374998|ref|NP_719041.1| RND multidrug efflux transporter MexF [Shewanella oneidensis MR-1]
 gi|24349730|gb|AAN56485.1|AE015785_8 RND multidrug efflux transporter MexF [Shewanella oneidensis MR-1]
          Length = 1047

 Score =  154 bits (387), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 69/694 (9%), Positives = 183/694 (26%), Gaps = 49/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +    G +        Q  +  +P  +P   +                 
Sbjct: 8   KRPIFAAVLSLLFFITGAIAVW-----QLPITEYPEVVPPTVVVTA---------NYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +   +    ++  + ++                +T++FA     +    +V   + 
Sbjct: 54  NPKVIAETVASPLEQEINGVEDMLYMSSQATSDGRMTLTITFAIGTDVDRAQTQVQSRVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  + ++  +VT        ++            +  S        D++   +  
Sbjct: 114 RAMPRLPQEVQRLGIVTEKSSPDLTMVVHLLSPDNRYDMLYLSNYAALNVKDELARIKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    DP+++  L  + + +       N        G +   ++D   
Sbjct: 174 GAVRLFGAGEYSLRIWLDPNKVSALGMSPSDIIAAVREQNQQAAAGSLGAQPSGNADFQL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +                     +  +    I                 +          
Sbjct: 234 LINVKG--------------RLTELSEFEDIIIKVGQNGEVIRLKDVARVELGAISYALR 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L             +  +     +      A L           +         GS  
Sbjct: 280 SLLDNKDAVAIPVFQASGSNAIQISDDVRAEMARLAKSFPEGLQYEIVYDPTVFVRGSIE 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV++V+ + +   +  ++   ++ ++++ T A + L+G +L   S+ G+
Sbjct: 340 AVVKTLLEAVLLVVLVVVLFLQTWRASIIPLVAVPVSLVGTFAFMHLMGFSLNALSLFGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E +        S   +           I  + +      +   F 
Sbjct: 400 VLAIGIVVDDAIVVVENVERNIASGLSPIAATQKAMKEVTGPIVATTLVLAAVFIPTAFM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVR---------------AMMIFIIRYKKMKS 522
               G   + FA+T+ +S  IS   ++++                 A+   + +      
Sbjct: 460 SGLTGQFYKQFALTITISTFISAINSLTLSPALSALLLKGHDAPKDALTRLMDKLFGGWL 519

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                            +     RF G+   +   + ++  +       G       Q  
Sbjct: 520 FTPFNRLFNRASEGYGYLVRKVIRFGGIIGLVYLGMVALTGVQFVNTPTGYVPGQDKQYL 579

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +  D + +      ++       N  G  + +                  +     
Sbjct: 580 VAFAQLPDAASLERTDVVIKKMSDIALNHPGVAHSIAFPGLSINGFTNSPNSGVVFVALD 639

Query: 643 TEIVPLSTIQNTEIVGPKISREL--IRKGIVGVI 674
              +  S   +   +  +++++   I+   + + 
Sbjct: 640 DFELRKSPELSANAIAGQLNQQFAGIQDAFIAIF 673



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 76/240 (31%), Gaps = 12/240 (5%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            N+      D            +         S      +E +  +   I           
Sbjct: 812  NVSQSAGPDRVMHYNGFTTAEINGGPAPGVSSGQAQAAIEKILAETLPIGMTYEWTELTY 871

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                        G++   +  + + + +  +++     L  I  + + +   L    L+G
Sbjct: 872  QQILAGN----TGLLVFPLVIVLVFMVLAAQYESLSLPLAIILIIPMTLLSALSGVLLYG 927

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             + N+     ++ L+G +  + +++ +  ++        +   + I ++    L   + T
Sbjct: 928  GDNNIFTQIGLIVLVGLATKNAILIVEFAKE---KQDHGMEVMESILEAARLRLRPILMT 984

Query: 776  SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS-SSIF--IAAPILLFIYDWRAKNAR 832
            S+A  + V+PM V+           M   +       +IF  I  P+  +    R +  R
Sbjct: 985  SIAFIMGVVPM-VFSTGAGAEMRQAMGVAVFAGMIGVTIFGLILTPLFYYSLVKRGRRKR 1043



 Score = 38.5 bits (87), Expect = 4.3,   Method: Composition-based stats.
 Identities = 26/124 (20%), Positives = 52/124 (41%), Gaps = 9/124 (7%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  T  F  L G   N  ++  ++  IG  V+D +VV + + +N+    
Sbjct: 369 PL---VAVPVSLVGTFAFMHLMGFSLNALSLFGLVLAIGIVVDDAIVVVENVERNIA--- 422

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
           + +S      K++ E  G  V T++      +P A      G     FA+ +     ++A
Sbjct: 423 SGLSPIAATQKAMKEVTGPIVATTLVLAAVFIPTAFMSGLTGQFYKQFALTITISTFISA 482

Query: 810 SSSI 813
            +S+
Sbjct: 483 INSL 486


>gi|91775713|ref|YP_545469.1| multidrug efflux protein [Methylobacillus flagellatus KT]
 gi|91709700|gb|ABE49628.1| Hydrophobe/amphiphile efflux-1 HAE1 [Methylobacillus flagellatus
           KT]
          Length = 1037

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/657 (10%), Positives = 170/657 (25%), Gaps = 38/657 (5%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
             + ++P   P                         +   +    +   +          
Sbjct: 30  LPVAQYPDIAPPVV---------NISATYPGASAKVIEESVTAIIEREMNGAPGLMYISA 80

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
           +       ++L+F      +  A +V   L+ V ++L    ++N +      +   ++  
Sbjct: 81  TSSPGTASLSLTFRQGTNPDLAAVEVQNRLKTVEARLPEVVRRNGIFIEKSADSIQLIVS 140

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
              +      IE         +  +   E   +          +    DP++L  +  + 
Sbjct: 141 LTSEGNRLTEIELGELAAANVLQALRRVEGVGKVQI-WSPEYAMRIWPDPAKLTAMNLSA 199

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           + ++      N        G R + D       V     ++                   
Sbjct: 200 SDVASAIRSHNARVTVGDLGNRAVPDHAPISANVISDSALT-------------TPEDFE 246

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
                               +    +       +                +   T++   
Sbjct: 247 RIPLRTRADGSAILLKDVARVEFGGSDYAFVSRVNGNNAAGMAVKMAPGSNAVATVKRIR 306

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L           +          S      T      LV +V+F+ +   +  L+
Sbjct: 307 ATMDELVRYLPAGVSYQIPYDTSAFVEISIEKVVHTLLEAIVLVFLVMFLFMQNLRATLI 366

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSV 448
               + + ++ T A++   G ++ + S+ G+VL IG+ VD  I+V E +      +    
Sbjct: 367 PTIVVPIALLGTFAVMLAAGFSINVLSMFGMVLAIGIVVDDAIVVVENVERIMAEEGLPP 426

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAIS 505
             +      +    I    +  +   V + FF    G   R F++++ +SI  S F A+S
Sbjct: 427 LQATIKAMKQISGAIIGITVVLISVFVPMAFFSGAVGNIYRQFSMSLAVSIAFSAFLALS 486

Query: 506 IVRAMMIFI---------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +  A+   +          +       +    +        +     R   W V    + 
Sbjct: 487 LTPALCATLLKPIIQDHHEKRGFFGWFNRMFAALTGRYQQRVGAIIKRPIRWLVVYGTII 546

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
           ++     +         + +G   + VL      +      L  +       +    +  
Sbjct: 547 AVVVFMFVRLPTAFLPDEDQGDFMITVLLPAGATMHETMGTLAHIAHYLNENEPV--KYV 604

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           + V      G       +   +K           ++            L    +  V
Sbjct: 605 YEVGGFSFYGTGSNSGMIFATLKDWKEREDAGQHVKAIVDRVNMQFMGLKNTTVFAV 661



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 9/216 (4%)

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +    + A         + I  I              +   E        ++     ++
Sbjct: 818  SFTINGNAAPGYSSGEAMQAIEGIARSLPRTIGYDWSGQSLEERRSGAQAPMLFGLSVLI 877

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++ +      W   L  I  + L I   L    L  +  ++     ++  IG S  + +
Sbjct: 878  VFLALAALYESWLIPLAVILVVPLGILGALLGVTLRDMPNDIYFKVGLIATIGLSAKNAI 937

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ +  +    LY   +   +   ++    L   V TS+A  + VLP+A+  G       
Sbjct: 938  LIVEVAKD---LYADGMGLMEATLEAARLRLRPIVMTSLAFGVGVLPLAIATGAASGAQS 994

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    +  GI+ A   +IF+       I  +  +  
Sbjct: 995  AIGTSVLGGIITATLLAIFLVPLFFAVIGRYIKRPQ 1030



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 79/237 (33%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +        +        ++VA  + +     ++   +P     
Sbjct: 263 DVARVEFGGSDYAFVSRVNGNNAAGMAVKMAPGSNAVATVKRIRATMDELVRYLPAGVSY 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
                        I K +  ++ + + + + +++  +     L     + + +  T    
Sbjct: 323 QIPYDTSAFVEISIEKVVHTLLEAIVLVFLVMFLFMQNLRATLIPTIVVPIALLGTFAVM 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+ ++  ++  IG  V+D +VV + +     +    +       K++ +  G 
Sbjct: 383 LAAGFSINVLSMFGMVLAIGIVVDDAIVVVENV--ERIMAEEGLPPLQATIKAMKQISGA 440

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  ++      +PMA + G+V      F++ +A  I  +A  ++ +   +   +  
Sbjct: 441 IIGITVVLISVFVPMAFFSGAVGNIYRQFSMSLAVSIAFSAFLALSLTPALCATLLK 497


>gi|300947803|ref|ZP_07161959.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 116-1]
 gi|300452623|gb|EFK16243.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 116-1]
          Length = 1025

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRH 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|120598048|ref|YP_962622.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
 gi|120558141|gb|ABM24068.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
          Length = 1046

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 56/580 (9%), Positives = 157/580 (27%), Gaps = 38/580 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGFVS-----FTKLSVREMPDVESPVVT---------ISTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SAAIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D K  ++          V    +    I    + +    R   D+  +     
Sbjct: 115 AQRRLPEDAKDPVVSKDNGSGEPSVYVNLSSS--IMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   ++                         N  
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDITNALRKE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 214 TPGGQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNLSLGIITQSDANPLVVAQEVHKEVDRVQNFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++ G ++ L ++  ++
Sbjct: 334 VYNTLFVTGALVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVVENIFHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   +++     +     +   F   + +
Sbjct: 454 GMVGLLFTEFSVMLAVSVMFSSLIALTLTPVLSSKLLKANVKPNRFNRWVDSGFARMEKV 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
               +        I+ L  +  I                 
Sbjct: 514 YRAAVSRAIQFRLIAPLVILACIGGSAWLMQQVPSQLAPQ 553



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 89/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IV 671
             + L            V + V K++  +        + +V    +  + R        +
Sbjct: 279 VNLSLGIITQSDANPLVVAQEVHKEVDRVQNFLPEGTSLVVDFDSTVFIDRSINEVYNTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        +FG   NL  + A++  IG
Sbjct: 339 FVTGALVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVMFSSLIALTLTPVLSSKLLKANVKPNR 498



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 699  TLILDITKTLGFFA-LFGIEFNLTAV-----AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L++  T  +G F    G+      +       ++ LIG    + +++ +      +L  
Sbjct: 878  PLVVMFTVPMGVFGGFLGLLITSQGINIYSQIGMIMLIGMVTKNGILIVEFAN---QLRD 934

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                    I  +    L   + T+    +  +P+      G     +    + FG+  A 
Sbjct: 935  RGFELDKAIIDASTRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFAT 994

Query: 810  SSSIFIAAPILLFI 823
              ++F+   +   I
Sbjct: 995  FVTLFVIPAMYRLI 1008


>gi|331673602|ref|ZP_08374365.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli TA280]
 gi|331068875|gb|EGI40267.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli TA280]
          Length = 1025

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 166/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R        V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAVRDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRSAISNANVRKPQGALEDSTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|256421694|ref|YP_003122347.1| acriflavin resistance protein [Chitinophaga pinensis DSM 2588]
 gi|256036602|gb|ACU60146.1| acriflavin resistance protein [Chitinophaga pinensis DSM 2588]
          Length = 1039

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 62/554 (11%), Positives = 158/554 (28%), Gaps = 40/554 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++++++   GL+               P+                   +    
Sbjct: 9   KRPLLIIVIFTVLILFGLISYNKLNYNLLPKIEVPTVT--------------VSTIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +++ + ++       + ++  ++I + F +    +     V      
Sbjct: 55  SASEVESSVTKKLEDVFAAIEGLDKINSTSQEGISQIIIQFKNGTNIDEAEANVQRKADQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D  + L+     +E  +V +    +   +   E    + +Q    +       
Sbjct: 115 AINDLPDDADRPLVNKVNLEEAPVVRAGVTSNLTPAAMYE---FVDKQLRPILQNVTGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         Q+    D S+L     + + ++      N S           + +     
Sbjct: 172 QVNIIGGDERQIQINVDQSKLWAYGLSISDVTNAVNNANQSFPAGSIETTEQQFTIQYDA 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++                      I   + G    +      +    A      
Sbjct: 232 NVASVAQL-------------------RDLIVRQQPGKGSIYLRDVAEVVDATAKATAIN 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV-EERNVGADLGSDS 360
            +            ++  +              +       +L            L S  
Sbjct: 273 HINGVPSIGIQIIKQSDANAVNVSRQVKAAFERIEGQYKNNQLKFTISTDQSTYTLRSAD 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   +V IV+   +   +  +    ++  ++I T   + LLG +L L ++  +
Sbjct: 333 AVMEDLVLAVVIVGIVMLAFLHSFRSSMFVMVALPSSMIPTFIAMYLLGFSLNLMTLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD +I+V E I            +   G +    T     +  ++  + L   
Sbjct: 393 SLVVGILVDDSIVVLENIYRHLEMGSDRRTAALEGRNEIGFTAMAITLVDVVVFLPLAMS 452

Query: 481 GGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F++ + +S L+S+F + ++   +     R + +        +        
Sbjct: 453 GGIIGAILREFSLVVVVSTLMSLFVSFTVTPMLASRFGRLEYLNPKSWWGKANLGFERLI 512

Query: 538 IAIQFMRARFWGVG 551
             I+   AR   V 
Sbjct: 513 DNIKESYARLLVVM 526



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/287 (11%), Positives = 82/287 (28%), Gaps = 11/287 (3%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                 +                    L V          +R   E +     +      
Sbjct: 215 AGSIETTEQQFTIQYDANVASVAQLRDLIVRQQPGKGSIYLRDVAEVVDATAKATAINHI 274

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                + +Q           V   VK     I         +            +    V
Sbjct: 275 NGVPSIGIQIIKQSDANAVNVSRQVKAAFERIEGQYKNNQLKFTISTDQSTYTLRSADAV 334

Query: 674 ----IISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
               +++ + + I +      +  ++  +  L   +  T     L G   NL  + A+  
Sbjct: 335 MEDLVLAVVIVGIVMLAFLHSFRSSMFVMVALPSSMIPTFIAMYLLGFSLNLMTLMALSL 394

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           ++G  V+D +VV + +    +        R    +  NE    ++  ++   +  LP+A+
Sbjct: 395 VVGILVDDSIVVLENI---YRHLEMGSDRRTAALEGRNEIGFTAMAITLVDVVVFLPLAM 451

Query: 789 WG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G   G+++  F++ +    +++   S  +   +          N +
Sbjct: 452 SGGIIGAILREFSLVVVVSTLMSLFVSFTVTPMLASRFGRLEYLNPK 498



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 90/254 (35%), Gaps = 8/254 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +  +       V S    ++           ++   + +        + T   ++ KK  
Sbjct: 779  LTFSNNNGQRFVLSQFADVKETMGESVLERSDRLNSITVNSNVAGRPSGTVAEDIKKKVA 838

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLI 701
               +P                     G+  +I + + + LI + +     +    + ++ 
Sbjct: 839  GIKLPPGVSVEYLGDVKNQGDAFSSLGL-ALITAILLVYLIMVALYESVIYPFVVLFSIP 897

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + +   L   AL     N+ ++  V+ L+G    + +++ D      +L     S  D +
Sbjct: 898  VALIGALLALALAMETLNIFSIIGVIMLLGLVSKNAILIVDF---TNQLKEEGRSVNDAL 954

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++  E L   + T++A  + +LP+A+    G  +    A  +  G+  +   ++F+   
Sbjct: 955  IEAGKERLRPILMTTLAMILGMLPIALATGAGSEIKNGMAWVIIGGLTSSMILTLFVVPA 1014

Query: 819  ILLFIYDWRAKNAR 832
            + + I   + +  +
Sbjct: 1015 MYVIIERLKNRFQK 1028


>gi|330827101|ref|YP_004390404.1| acriflavin resistance protein [Alicycliphilus denitrificans K601]
 gi|329312473|gb|AEB86888.1| acriflavin resistance protein [Alicycliphilus denitrificans K601]
          Length = 1019

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/544 (12%), Positives = 155/544 (28%), Gaps = 40/544 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN     +L+ ++   GLL           +  FP       +             L   
Sbjct: 9   RNPVPAAMLFVLLTLAGLLS-----FSAMKVQNFPDMDLPVVM---------VTAALPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   +  ++      ++      I   +   +  +   D V   +  
Sbjct: 55  APGQLESDVARKIENAIATTQRLKHITTTLVDGTATIAAEYQLEKPVQEAVDDVRSAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  D +  ++         I+     I        E S  +  Q   ++       
Sbjct: 115 VRADLPADLRDPVVTKLELSSQPIL--AFAIASSKLDEQELSWFVDDQLTRRLLAVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    DP RL+ L  T A++S                            
Sbjct: 173 AVSRVGGATREVRVALDPLRLQALGVTAAEVSRQLR-------------------QVQLE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               + E+ G      T        +    +     G RR        +   +A      
Sbjct: 214 SAGGRAELGGAEQPLRTLATMQTAGQIAA-LEIPVSGGRRIRLDQLAQVSDTVAEPRTAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     S     S              L+A    ++L       V         
Sbjct: 273 LLGGQPVIGFEVSRARGASEVEVGAGVQRALDALQAEHPHLQLTR-TVDFVEIAQDEYDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +  +V+  ++ L+VI     + LLG ++ + ++  + 
Sbjct: 332 SMHLLYEGAILAVVVVWLFLRDWRATIVSAVALPLSVIPAFIGMYLLGFSINIITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEVENIVRHLRMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F  T  L++  S+  A  +   M  ++++    +  +   L+ +       
Sbjct: 452 GIAGRFFKQFGWTAALAVFASLVVARMLTPMMAAYLLKPLATQEREPRWLAAYMRASGWC 511

Query: 539 AIQF 542
               
Sbjct: 512 LRHR 515



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 77/254 (30%), Gaps = 10/254 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           ++ V   R + L  +    +++     +              + +    V     ++   
Sbjct: 244 EIPVSGGRRIRLDQLAQVSDTVAEPRTAALLGGQPVIGFEVSRARGASEVEVGAGVQRAL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P   +  T         E      +    + +A+++       W   + +   
Sbjct: 304 DALQAEHPHLQLTRTVDFVEIAQDEYDSSMHLLYEGAILAVVVVWLFLRDWRATIVSAVA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +        L G   N+  + A+  ++G  V+D +V  + +   ++      +   
Sbjct: 364 LPLSVIPAFIGMYLLGFSINIITLLALSLVVGILVDDAIVEVENI---VRHLRMGKTPYQ 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     + T+       LP A   G        F    A  +     +S+ +A
Sbjct: 421 AAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGRFFKQFGWTAALAV----FASLVVA 476

Query: 817 APILLFIYDWRAKN 830
             +   +  +  K 
Sbjct: 477 RMLTPMMAAYLLKP 490



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 85/206 (41%), Gaps = 8/206 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             V E V++        ++++  ++   ++  EL     + ++   + + I + + FK   
Sbjct: 810  EVTEAVRQLPAVQGLPASVRLIDVGDAEMMGELFASFGLAMLTGVVCIYIVLVLLFKDLL 869

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  +  L L +        L G  F++ ++  ++ L+G +  + +++ +     +   
Sbjct: 870  QPVTILAALPLSLGGAFVALLLAGKSFSMPSLIGLIMLMGIATKNSILLVE---YAIVAR 926

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVV 807
               +     +  + ++     + T++A    ++P+A+  G    SF    A+ +  G++ 
Sbjct: 927  RQGMDRIHALLDACHKRARPIIMTTLAMGAGMMPIALALGGADMSFRSPMAVAVIGGLIT 986

Query: 808  AASSSIFIAAPILLFIYDWRAKNARI 833
            +   S+ +   +  ++ D+     R+
Sbjct: 987  STVLSLLVVPSVFTYVDDFEQWLRRL 1012


>gi|73540277|ref|YP_294797.1| acriflavin resistance protein [Ralstonia eutropha JMP134]
 gi|72117690|gb|AAZ59953.1| Acriflavin resistance protein [Ralstonia eutropha JMP134]
          Length = 1046

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 66/598 (11%), Positives = 157/598 (26%), Gaps = 45/598 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           L   P                    +     
Sbjct: 10  RPVATALLMLAILLSGLVA-----YRLLPLSALPEVDYPTIQ---------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F  +   +    +V   +   
Sbjct: 56  PDVMTSSITAPLERQFGQMPGLKQMSSSSSGGASVITLQFELTLPLDVAEQEVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     + +      + +++   +        +    +  +   +I   +    
Sbjct: 116 SNLLPSDLPMPPVYSKVNPADAPIMT-IAMTSDTLPLPKLQDMVDTRVAAKISQIQGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L  L  +   +       N +     F       +      
Sbjct: 175 VTISGGQRPAVRIQANPTALASLGMSIDDLRTAIGAANVNGAKGSFDGPARASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                            I                 I            
Sbjct: 235 LRSA--------------------DEYKQIIIAYQNGAPIRITDVAEIVDGPENNRLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L+          +          S    
Sbjct: 275 ANGNPSIILNIQRQPGANVIEVVDRIKTLLPQLQTALPASVHAQLMTDRTTTIRASVHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ + G ++   ++  + +
Sbjct: 335 EFELFLAIALVVMVIFVFLRNVSATIIPGVAVPLSLVGTFGVMYMAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIMRYIEEGDSPMEAALKGSKQIGFTIISLTFSLVAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFF 532
             G   R FAIT+ +SILIS   ++++   M   +        + +  K+      +   
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLRHVPEDQQSRFHKATGRFFDNVIH 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                +     R +   V       +  +  +      + +   G IQ    A +   
Sbjct: 515 RYGVALEWVLDRQKATLVVAVATLVLTVLLYMLVPKGFFPVQDTGLIQGITEATQTTS 572



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 92/264 (34%), Gaps = 12/264 (4%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
               T   N  +      +  ++A +      +    E +   + +        N  + L
Sbjct: 224 ARASTIDANDQLRSADEYKQIIIAYQNGAPIRITDVAEIVDGPENNRLAAWANGNPSIIL 283

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIIS 676
             Q         V++ +K  + ++           +    +  +          + + I+
Sbjct: 284 NIQRQPGANVIEVVDRIKTLLPQLQTALPASVHAQLMTDRTTTIRASVHDVEFELFLAIA 343

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + M+I++++R      +     + L +  T G   + G   N   + A+    G+ V+D
Sbjct: 344 LVVMVIFVFLR-NVSATIIPGVAVPLSLVGTFGVMYMAGFSINNLTLMALTIATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +V+ + +   M+      S  +   K   +     +  + +    ++P+   G   G +
Sbjct: 403 AIVMIENI---MRYIEEGDSPMEAALKGSKQIGFTIISLTFSLVAVLIPLLFMGDVVGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
              FAI +A  I+++A  S+ +  
Sbjct: 460 FREFAITLAVSILISAVVSLTLTP 483



 Score = 43.5 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 44/103 (42%), Gaps = 12/103 (11%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +  +     ++ R+ I ++        + T+MAA ++ LPM +    G  + 
Sbjct: 926  IMMIDFALEAEREG--GMAPREAIFQACLLRFRPILMTTMAALLAALPMMLGTGIGSELR 983

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLF-------IYDWRAKN 830
                + M  G++V+   ++F    I L        + DWR + 
Sbjct: 984  RPLGVTMVGGLLVSQVLTLFTTPVIYLAFDRVAFRLKDWRKRR 1026


>gi|301643526|ref|ZP_07243570.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 146-1]
 gi|301078099|gb|EFK92905.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 146-1]
          Length = 1025

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|323972775|gb|EGB67974.1| AcrB/AcrD/AcrF family protein [Escherichia coli TA007]
          Length = 1025

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|310768052|gb|ADP13002.1| multidrug efflux system subunit MdtB [Erwinia sp. Ejp617]
          Length = 1039

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 69/621 (11%), Positives = 167/621 (26%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G++           +   P                    +     
Sbjct: 19  RPVATTLLMIAMLLAGIM-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + + L F  S   +    +V   +   
Sbjct: 65  PDVVTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVNLQFQLSLALDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        + +  +  +   ++        
Sbjct: 125 TNLLPGDLPNLPVYSKVNPADPPMMT-LAVTTSSMPMTQVADMVETRVAQKLSQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  T+  +                G   +  + G+   
Sbjct: 184 VTLSGGQRPAVRVKLNAQALAALGITSETVRSAI------------GSANVNSAKGSLDG 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            E  + +S          +          +                 + +       G  
Sbjct: 232 PERSITLSANDQIKTAEGYRQ--------LIISYQNGSPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    L   L A         +          S    
Sbjct: 284 ANRQPAIVLNVQRQPGANIIATADNIRRLLPSLTASLPKSVEVKLLSDRSTHIRASVRDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      L+   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLALALVVMIIYLFLRNAAATLIPAVAVPLSLIGTFAAMYFLGFSVNNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVVENISRHREKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS F ++++   M   ++    ++  +    +   L    IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAFVSLTLTPMMCARMLNTGSVRQQNRFARASEALFDRVIA 523

Query: 540 IQ-------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                                   +I  +  +      + +   G IQ  V A + V  +
Sbjct: 524 RYGRLLQRVLNHPWLTLGVALATLAITVLLWVTIPKGFFPLQDNGIIQGTVQAPQSVSYA 583

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    +++    +       
Sbjct: 584 NMAQRQQAVASVIMKDPAVQS 604



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 7/141 (4%)

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           M+IY+++R      L     + L +  T       G   N   + A+    G+ V+D +V
Sbjct: 356 MIIYLFLR-NAAATLIPAVAVPLSLIGTFAAMYFLGFSVNNLTLMALTIATGFVVDDAIV 414

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGS 796
           V + +    +             K   E     +  + +    ++P+   G   G +   
Sbjct: 415 VVENI---SRHREKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFRE 471

Query: 797 FAIPMAFGIVVAASSSIFIAA 817
           FA+ +A  I+++A  S+ +  
Sbjct: 472 FAVTLAVAILISAFVSLTLTP 492



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 90/247 (36%), Gaps = 6/247 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V        SV  S + S++    +      ++       +   D+ +  + ++ +   
Sbjct: 779  SVRLKSSDGGSVPLSAIASVEQRYGALSINHLDQFPSTTFSFNVSDNASLEQAVDAISLA 838

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
              ++   + I           +  +   +  ++ + +AM I + + ++ +   +  ++TL
Sbjct: 839  QQDLAMPADIITRFQGSTLAFKTALSNTVWLIVAAIVAMYIVLGVLYESFIHPVTILSTL 898

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   L    + G E ++ AV  ++ LIG    + +++ D            ++  + 
Sbjct: 899  PTAGAGALLALMIAGSELDVIAVIGIILLIGIVKKNAIMMID--FALAAERDQGMTPYEA 956

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++        + T++AA    LP+ +    G  +       M  G+VV+   ++F   
Sbjct: 957  IYQACLLRFRPILMTTLAALFGALPLMLSHGVGAELRRPLGTAMVGGLVVSQVLTLFTTP 1016

Query: 818  PILLFIY 824
             I L   
Sbjct: 1017 VIYLLFD 1023


>gi|319764897|ref|YP_004128834.1| acriflavin resistance protein [Alicycliphilus denitrificans BC]
 gi|317119458|gb|ADV01947.1| acriflavin resistance protein [Alicycliphilus denitrificans BC]
          Length = 1019

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 70/544 (12%), Positives = 155/544 (28%), Gaps = 40/544 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN     +L+ ++   GLL           +  FP       +             L   
Sbjct: 9   RNPVPAAMLFVLLTLAGLLS-----FSAMKVQNFPDMDLPVVM---------VTAALPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   +  ++      ++      I   +   +  +   D V   +  
Sbjct: 55  APGQLESDVARKIENAIATTQRLKHITTTLVDGTATIAAEYQLEKPVQEAVDDVRSAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  D +  ++         I+     I        E S  +  Q   ++       
Sbjct: 115 VRADLPADLRDPVVTKLELSSQPIL--AFAIASSKLDEQELSWFVDDQLTRRLLAVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    DP RL+ L  T A++S                            
Sbjct: 173 AVSRVGGATREVRVALDPLRLQALGVTAAEVSRQLR-------------------QVQLE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               + E+ G      T        +    +     G RR        +   +A      
Sbjct: 214 SAGGRAELGGAEQPLRTLATMQTAGQIAA-LEIPVSGGRRIRLDQLAQVSDTVAEPRTAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     S     S              L+A    ++L       V         
Sbjct: 273 LLDGRPVIGFEVSRARGASEVEVGAGVQRALDALQAEHPHLQLTR-TVDFVEIAQDEYDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +  +V+  ++ L+VI     + LLG ++ + ++  + 
Sbjct: 332 SMHLLYEGAILAVVVVWLFLRDWRATIVSAVALPLSVIPAFIGMYLLGFSINIITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEVENIVRHLRMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F  T  L++  S+  A  +   M  ++++    +  +   L+ +       
Sbjct: 452 GIAGRFFKQFGWTAALAVFASLVVARMLTPMMAAYLLKPLATQEREPRWLAAYMRASGWC 511

Query: 539 AIQF 542
               
Sbjct: 512 LRHR 515



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/245 (11%), Positives = 68/245 (27%), Gaps = 17/245 (6%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                V     +  +       F+  +                   L+     +     +
Sbjct: 260 QVSDTVAEPRTAALLDGRPVIGFEVSRARGASEVEVGAGVQRALDALQAEHPHLQLTRTV 319

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             ++  +         L    I+ V++              W   + +   L L +    
Sbjct: 320 DFVEIAQDEYDSSMHLLYEGAILAVVVVW-------LFLRDWRATIVSAVALPLSVIPAF 372

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               L G   N+  + A+  ++G  V+D +V  + +   ++      +      ++ +E 
Sbjct: 373 IGMYLLGFSINIITLLALSLVVGILVDDAIVEVENI---VRHLRMGKTPYQAAMEAADEI 429

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               + T+       LP A   G        F    A  +     +S+ +A  +   +  
Sbjct: 430 GLAVIATTFTLIAVFLPTAFMSGIAGRFFKQFGWTAALAV----FASLVVARMLTPMMAA 485

Query: 826 WRAKN 830
           +  K 
Sbjct: 486 YLLKP 490



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 85/206 (41%), Gaps = 8/206 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             V E V++        ++++  ++   ++  EL     + ++   + + I + + FK   
Sbjct: 810  EVTEAVRQLPAVQGLPASVRLIDVGDAEMMGELFASFGLAMLTGVVCIYIVLVLLFKDLL 869

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  +  L L +        L G  F++ ++  ++ L+G +  + +++ +     +   
Sbjct: 870  QPVTILAALPLSLGGAFVALLLAGKSFSMPSLIGLIMLMGIATKNSILLVE---YAIVAR 926

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVV 807
               +     +  + ++     + T++A    ++P+A+  G    SF    A+ +  G++ 
Sbjct: 927  RQGMDRIHALLDACHKRARPIIMTTLAMGAGMMPIALALGGADMSFRSPMAVAVIGGLIT 986

Query: 808  AASSSIFIAAPILLFIYDWRAKNARI 833
            +   S+ +   +  ++ D+     R+
Sbjct: 987  STVLSLLVVPSVFTYVDDFEQWLRRL 1012


>gi|323183857|gb|EFZ69248.1| multidrug resistance protein mdtC [Escherichia coli 1357]
          Length = 1025

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFATTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|148238731|ref|YP_001224118.1| RND family multidrug efflux protein [Synechococcus sp. WH 7803]
 gi|147847270|emb|CAK22821.1| Multidrug efflux transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1)
           family (2.A.6.2.), RND superfamily [Synechococcus sp. WH
           7803]
          Length = 1045

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 76/641 (11%), Positives = 173/641 (26%), Gaps = 40/641 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   + ++   ++   G +  +        L+  P   P                    
Sbjct: 9   LRRPVFTIVCSLLVLLAGTVALV-----GLGLEDLPQLAPTRV---------SVSATFPA 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++  + L+       S RQ    ++L F      E  A KV   + 
Sbjct: 55  ASPEVVEQSVTAVLEKQLNGLEGLESMTSSSRQGGASLSLRFQSG-DPELNAIKVQNEVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + +L     +  L      +  +++   +    +   I     + +   + +      
Sbjct: 114 LASRRLPQAVTRQGLNVNRSTDDLLLILGFSAPPGLYEPIFIGGWLDQNLREALRAVPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                     +      DP+RL Q   +T  ++      N        G           
Sbjct: 174 GDIRVFGSSELAFRLWLDPNRLEQFNLSTNDVTAALAEQNVLAAVGSLGEAPAPAGQLFS 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++ +  +       A              +   E G     +          +     
Sbjct: 234 LPIDAEGRLRNRADFEAM------------VVKRTEAGGLVRLKDVGRVQLGQRSYGSST 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +              L +   P     V          +  
Sbjct: 282 LNLEGNSSVAVGIFQRDGANALEVSGAVMEALKRLESSFPPSLSMQVIVDVAETVQANLD 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
              GT      LVL+VL + +   +  L+   ++ + +I +L ++ L G+ L    + G+
Sbjct: 342 RTTGTLRDAVVLVLVVLVLFLGRWRLALIPGIAVPVALIGSLVVVRLSGSNLNSLILFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  G+ VD  I+V+E I            + +   +     +  +++      + +   
Sbjct: 402 VLATGIVVDDAIVVSEDIAGRIEDGAEPQGAAEDAMAELAGAVVATSLVLAAVFLPVLLI 461

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G      +  A+ +  +IL S F A++        +             +  + +    
Sbjct: 462 PGSIGRLYQPIALAISGAILFSTFNALTFTPMACARVLSSGSGRLPGPVKRISQRLRQGM 521

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A+   R R     I     +  I L          + +G ++       
Sbjct: 522 RRLQSWYGQALALWLPRGRIVLGLILTGLMLTGIGLATIPTSFIPDEDQGQVRGYFTLPE 581

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
              L    + +E ++              +  R   Q G+ 
Sbjct: 582 GASLERTEAVMERIRQVIAEEPLIRSGNFYAGRSFGQSGED 622



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 68/165 (41%), Gaps = 9/165 (5%)

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             +  V+ +    ++Y+ +      +   L  + T+ + +   L    L G+  ++ A   
Sbjct: 873  SVSWVLFALGLTVVYLLLAGLYESFLDPLIILLTVPMALLGALIGLKLRGLTLDVYAQMG 932

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +L L+  +  + +++ +      +     I   D I+++    +   + T++ +    LP
Sbjct: 933  LLVLVSLAAKNGILIVEFAN---QRLEQGIPLFDAIEEAAINRMRPILLTAVTSLAGFLP 989

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + +    G +   S    +  G++V+   S+F+   I L +  WR
Sbjct: 990  LLLASGSGSASRISIGTVVFSGLLVSTLLSLFVIPAIYLQLKRWR 1034



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
              +W  AL     + + +  +L    L G   N   +  ++   G  V+D +VV + + 
Sbjct: 361 FLGRWRLALIPGIAVPVALIGSLVVVRLSGSNLNSLILFGLVLATGIVVDDAIVVSEDI- 419

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
                       +   + ++ E  G  V TS+      LP+ +  GS+       A+ ++
Sbjct: 420 --AGRIEDGAEPQGAAEDAMAELAGAVVATSLVLAAVFLPVLLIPGSIGRLYQPIALAIS 477

Query: 803 FGIVVAASSSIFIAA 817
             I+ +  +++    
Sbjct: 478 GAILFSTFNALTFTP 492


>gi|54309881|ref|YP_130901.1| putative multidrug resistance protein [Photobacterium profundum
           SS9]
 gi|46914320|emb|CAG21099.1| putative multidrug resistance protein [Photobacterium profundum
           SS9]
          Length = 1043

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 63/648 (9%), Positives = 170/648 (26%), Gaps = 40/648 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGMVS-----FSKLAVREMPDVENPVVT---------VMTNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +          R   ++IT+ F+           +   +  
Sbjct: 55  SATVMESQVTSPIEDELSGISGIDNITSVTRNGMSRITVEFSMDWDLTEGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            N +L  +    ++          +       +      + +    R   D+  +     
Sbjct: 115 ANRRLPDEADDPVVSKDNGSGEPAIYINLTSSE--MDRTQLTDYAQRVLEDRFSLINGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P+ +     TT  +                          N  
Sbjct: 173 SVSLSGALYKVMYVKLKPALMAGRGVTTKDIVDTLQDE-------------------NIE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   +V      ++  TA            +          +     +I           
Sbjct: 214 LPGGEVRNDATVMSVRTARLYLSPEDFDYLVVRTADDGTPVYLKDVADIDVGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +     +        ++          V+         S S 
Sbjct: 274 KSNGVANLSLGIVTMSDANPLNVAKDVHAEVDRMQQFIPAGTTLAVDYDATVFIDRSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++VL++ +   +  L+   ++ +++I        LG ++ L ++  ++
Sbjct: 334 VYSTLLITGALVILVLYIFIGQARATLIPAVTVPVSLISAFIAAYFLGFSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     K +S   +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENMFHHLEKGESPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIPD 536
           G        F++ + +S++ S   A+++   +   +  +  K  K           L   
Sbjct: 454 GMVGRLFTEFSVLLAMSVIFSSIIALTLTPVLGSKMLKVNVKPGKFNLWIDSQFSKLENG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +  M  +       I+    +        +   +  +    +     +  + +    
Sbjct: 514 YRNVVAMSVKRRYFAPFIVVGCMAASYGLMQIVPAQLAPQEDRGVLFAFVKGAEGTSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            + ++   +       G+          P            V  ++ +
Sbjct: 574 MIGNMDEVEQRLLPMLGQGMLKSVSIQTPAFGGRAGDQTGFVIMQLED 621



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F       + L            V + V  
Sbjct: 243 LVVRTADDGTPVYLKDVADIDVGAENENSTFKSNGVANLSLGIVTMSDANPLNVAKDVHA 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++  +        T  V    +  + R        + +  + + +++YI+I  +    L 
Sbjct: 303 EVDRMQQFIPAGTTLAVDYDATVFIDRSISEVYSTLLITGALVILVLYIFI-GQARATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +          G   NL  + A++  IG  V+D +VV + M           
Sbjct: 362 PAVTVPVSLISAFIAAYFLGFSINLLTLMALILSIGLVVDDAIVVVENM---FHHLEKGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSS 812
           S      K   E     V T+    +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 SPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGRLFTEFSVLLAMSVIFSSIIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  +
Sbjct: 479 LTLTPVLGSKMLKVNVKPGK 498



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 78/232 (33%), Gaps = 8/232 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +  ++      +    +K   + L+    D       L+ + ++  +I+P     N  
Sbjct: 781  DTVTKIEEIASPQRLSHTDKQKSITLKGNLNDGYTLGNALDFLDQQAIDILPSDITINYS 840

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                           +   ++ +   + +  +F+ +   L  + T+ + I   +    + 
Sbjct: 841  GESKDFREN-QSDIFMVFGLALLIAYLVLAAQFESFINPLVVMLTVPMGIFGGMAGLWIM 899

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ +   ++ LIG    + +++ +      +L    I F   I  +    L   + 
Sbjct: 900  GQGLNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDKGIEFEQAIVDASVRRLRPILM 956

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            T+       +P+ +    G     +    + FG+  A   ++ +   +   +
Sbjct: 957  TAFTTLFGAIPLIMSTGAGSESRMAVGTVVFFGMAFATLVTLLVIPAMYRLL 1008


>gi|331653505|ref|ZP_08354506.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli M718]
 gi|331048354|gb|EGI20430.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Escherichia coli M718]
          Length = 1025

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|170019597|ref|YP_001724551.1| multidrug efflux system subunit MdtC [Escherichia coli ATCC 8739]
 gi|188495294|ref|ZP_03002564.1| multidrug resistance protein MdtC [Escherichia coli 53638]
 gi|194436289|ref|ZP_03068391.1| multidrug resistance protein MdtC [Escherichia coli 101-1]
 gi|253772990|ref|YP_003035821.1| multidrug efflux system subunit MdtC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162067|ref|YP_003045175.1| multidrug efflux system subunit MdtC [Escherichia coli B str.
           REL606]
 gi|300897075|ref|ZP_07115541.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 198-1]
 gi|301026384|ref|ZP_07189829.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 196-1]
 gi|189081607|sp|B1IYZ8|MDTC_ECOLC RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|169754525|gb|ACA77224.1| acriflavin resistance protein [Escherichia coli ATCC 8739]
 gi|188490493|gb|EDU65596.1| multidrug resistance protein MdtC [Escherichia coli 53638]
 gi|194425017|gb|EDX41002.1| multidrug resistance protein MdtC [Escherichia coli 101-1]
 gi|242377729|emb|CAQ32490.1| mdtC, subunit of MdtABC-TolC multidrug efflux transport system
           [Escherichia coli BL21(DE3)]
 gi|253324034|gb|ACT28636.1| acriflavin resistance protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973968|gb|ACT39639.1| multidrug efflux system, subunit C [Escherichia coli B str. REL606]
 gi|253978162|gb|ACT43832.1| multidrug efflux system, subunit C [Escherichia coli BL21(DE3)]
 gi|299879702|gb|EFI87913.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 196-1]
 gi|300359125|gb|EFJ74995.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 198-1]
 gi|323961717|gb|EGB57320.1| AcrB/AcrD/AcrF family protein [Escherichia coli H489]
          Length = 1025

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|312172887|emb|CBX81143.1| Multidrug resistance protein [Erwinia amylovora ATCC BAA-2158]
          Length = 1039

 Score =  154 bits (387), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 72/621 (11%), Positives = 165/621 (26%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMIAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     L              + I L F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQLSGLKQMDSQSSGGASVINLQFQLNLALDVAGQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        + +  +  +   +I        
Sbjct: 125 TNLLPDDLPNQPVYSKVNPADPPMMT-LAVTSSTMPMTQVADMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  ++  +                G   +  + G+   
Sbjct: 184 VTLSGGQRPAVRVKLNAPALAALGISSETVRSAI------------GNANVNSAKGSLDG 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            E  + ++          F          +                 + +       G  
Sbjct: 232 PERSITLAANDQIKTADGFRQ--------LIISYQNGSPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    L   L A         +          S    
Sbjct: 284 TNRQPAIVLNVQRQPGANIIATADHIRRLLPSLTASLPKSVEVKLLSDRSSLIRASVRDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++ + +      L+   ++ L++I T A +  LG +L   ++  + +
Sbjct: 344 QFELLLALALVVMIISLFLRNLAATLIPAVAVPLSLIGTFAAMYFLGFSLNNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K      +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVVENISRHLEKGDKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS F ++++   M   ++    ++  +    +   L    IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAFVSLTLTPMMCARMLSAGSLRQQNRFSRASEALFDRIIA 523

Query: 540 IQ-------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                                   +I  +  +      + +   G IQ  V A + V  +
Sbjct: 524 RYGLLLQRVLHHPWLTLGVALGTLAITVLLWISIPKGFFPLQDNGIIQGTVQAPQSVSYA 583

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    +++    +       
Sbjct: 584 NMAQRQQAVASVIMQDPAVQS 604



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 6/140 (4%)

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           +I           L     + L +  T       G   N   + A+    G+ V+D +VV
Sbjct: 356 MIISLFLRNLAATLIPAVAVPLSLIGTFAAMYFLGFSLNNLTLMALTIATGFVVDDAIVV 415

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF 797
            + +    +             K   E     +  + +    ++P+   G   G +   F
Sbjct: 416 VENI---SRHLEKGDKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREF 472

Query: 798 AIPMAFGIVVAASSSIFIAA 817
           A+ +A  I+++A  S+ +  
Sbjct: 473 AVTLAVAILISAFVSLTLTP 492



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 89/246 (36%), Gaps = 6/246 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V        SV  S + S++    +      ++       +   D  +  + ++ +    
Sbjct: 780  VRLKSRDGGSVPLSAIASVEQRHGALSINHLDQFPSTTFSFNVSDDASLEQAVDAISLAQ 839

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             ++   + I           +  +   +  ++ + +AM I + + ++ +   +  ++TL 
Sbjct: 840  QKLAMPADITTRFQGSTLAFKTALANTVWLIVAAIVAMYIVLGVLYESFIHPVTILSTLP 899

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    + G E ++ A+  ++ LIG    + +++ D            ++    I
Sbjct: 900  TAGAGALLALMIAGNELDVIAIIGIILLIGIVKKNAIMMID--FALAAERDQGMTPYQAI 957

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++        + T++AA    LP+ +    G  +     I M  G+VV+   ++F    
Sbjct: 958  YQACLLRFRPILMTTLAALFGALPLMLSHGVGAELRRPLGIAMVGGLVVSQVLTLFTTPV 1017

Query: 819  ILLFIY 824
            I L   
Sbjct: 1018 IYLLFD 1023


>gi|300930971|ref|ZP_07146331.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 187-1]
 gi|300461197|gb|EFK24690.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 187-1]
          Length = 1025

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSDLRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|222102631|ref|YP_002539670.1| Acr family transporter [Agrobacterium vitis S4]
 gi|221739232|gb|ACM39965.1| Acr family transporter [Agrobacterium vitis S4]
          Length = 1018

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 90/656 (13%), Positives = 196/656 (29%), Gaps = 40/656 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L++++   GL         +  +  FP       I+            L+  
Sbjct: 9   RNPVPPLLLFALLTACGLWA-----FNRLDIQNFPDMDLPT-IN--------ISATLDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L K      ++      I+++F   +  +   D+V   +  
Sbjct: 55  AAAQLETEVARKIEDKLTGLSKLDSVTTTITDGSVSISVAFEVGKDTQAALDEVKSAVDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  D     +   +     +     + D++     E S  I       +   +   
Sbjct: 115 AKSDLPQDMDDPTVSKQSLNSSPLTTFVVHSDKLDDA--ELSWFIDNDMSKALMAVKGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I  ++  E + + L  L  T   ++                           Y
Sbjct: 173 EVGRLGGIDREIRVELNSNMLDSLGLTANDVNTQL-------------------EAVQTY 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   K  I G   +  T        +          G+    +           +     
Sbjct: 214 LSGGKGRIGGESQSVRTVVAAETADELRAMPVPLPKGSWVRLDELGTVTDSQSDLTSLAY 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +   PVI   I   K       T +    + A   A              +     +   
Sbjct: 274 LNGKPVIAAQIKRSKGYSDIAVTDDVRTAMKAFAAANP--QVTIEEAYNTIVPTEQNYES 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A + ++V++M +   +  L+A  ++ L++I T   +   G TL   ++  + 
Sbjct: 332 SMDMIYEGAVIAVLVVWMFLRDWRATLLAAVALPLSIIPTFLAMYFCGYTLNTITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  +S F +     +     +  +  T +   +   F G
Sbjct: 392 LVVGILVDDAIVEIENIERHLRMGKSPFDAAMEAANEIGLAVIATTFTLVAVFLPTAFMG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T  +++L S+  A  +   M  +I++    K  +   L R +L     
Sbjct: 452 GVVGIIFKQFGVTASVAVLASLLVARLVTPMMAAYILKPGTAKEEEDGRLMRSYLWLVKG 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           A++       G    + F++  +  L T       D +  + +       ++ +   S  
Sbjct: 512 ALRRRWIPVLGTVGFLAFTLLLLSHLSTGFFPASDDAQTKVTITTPTGSTIETTDEASRK 571

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            S  I  +       +             +   +     +   +T I      Q+ 
Sbjct: 572 ASEIIAKVDHVTSVFQATGTASTGGGASSTTTSSTNSATIVVNLTPIGERDVKQSQ 627



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 74/242 (30%), Gaps = 6/242 (2%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + +     V L  + +  +S                     + +    +A T  +   
Sbjct: 243 MPVPLPKGSWVRLDELGTVTDSQSDLTSLAYLNGKPVIAAQIKRSKGYSDIAVTDDVRTA 302

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K      P  TI+          +       +    + IA+L+       W   L A  
Sbjct: 303 MKAFAAANPQVTIEEAYNTIVPTEQNYESSMDMIYEGAVIAVLVVWMFLRDWRATLLAAV 362

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L L I  T       G   N   + A+  ++G  V+D +V  + +    +      S  
Sbjct: 363 ALPLSIIPTFLAMYFCGYTLNTITLLALSLVVGILVDDAIVEIENI---ERHLRMGKSPF 419

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           D   ++ NE     + T+       LP A  GG V      F +  +  ++ +   +  +
Sbjct: 420 DAAMEAANEIGLAVIATTFTLVAVFLPTAFMGGVVGIIFKQFGVTASVAVLASLLVARLV 479

Query: 816 AA 817
             
Sbjct: 480 TP 481



 Score = 41.6 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 55/164 (33%), Gaps = 4/164 (2%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                       +  + + V     +  +       ++  E    K   EL       + 
Sbjct: 793 DRSRNVTLTIELNGRSLSAVTAEAAQLPSYKNLPQGVKFVEQGELKRQTELFNSFATAIA 852

Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I    +   + + F  +   +  +  + L +   L    L G  F++ AV  +L LIG  
Sbjct: 853 IGIFCIYAVLVLLFHDFLQPVTILMAIPLALGGALLPLVLTGTSFSMPAVIGLLLLIGIV 912

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             + +++ +   +  +     +S  D +  + ++     + T++
Sbjct: 913 SKNSILLVEYAIEARRG---GMSRYDALVDACHKRARPIIMTTI 953


>gi|197285445|ref|YP_002151317.1| multidrug efflux system subunit MdtB [Proteus mirabilis HI4320]
 gi|227355929|ref|ZP_03840321.1| multidrug resistance protein [Proteus mirabilis ATCC 29906]
 gi|194682932|emb|CAR43319.1| multidrug resistance protein [Proteus mirabilis HI4320]
 gi|227163917|gb|EEI48819.1| multidrug resistance protein [Proteus mirabilis ATCC 29906]
          Length = 1043

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 67/685 (9%), Positives = 175/685 (25%), Gaps = 48/685 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMVAILLAGIV-----GYRMLPVSALPEVDYPTIQ---------VVTLYPGAN 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PEVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLMFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        VL+   +   +    +    +  +   +I        
Sbjct: 125 TNLLPTDLPYPPIYSKVNPADPPVLT-LAVTSSVLPMTQLQDMVETRISQKISQVNGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +          +  +       N +                    
Sbjct: 184 VSLAGGQRPAVRVKLNAQAAASYGLDSETIRVAINNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+      +                 I +       G  
Sbjct: 236 ------------VTLSANDQMKSLDDYRKLIVSYKNGAPIRLADIATIEQAPENNQLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T +    L   L +         +          S    
Sbjct: 284 ANNQQAIIINVQRQPGVNVIETTDNIRNLLPDLVSNLPKSVNVEILTDRTTTIRASVKDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +  G   L+   ++ L+++ T A++   G ++   ++  + +
Sbjct: 344 QFELGLAIALVVMVIYLFLRNGVATLIPSIAVPLSLVGTFAVMYFCGFSVNNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +      +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYLERGDKPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   +        +      +         
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARL--------LKPESQIKHNRFEMACE 515

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F +                   L        +     + +        D  +++  +E
Sbjct: 516 RFFEKMIAVYAVWLKRVLNHQWITLGVALSTLALTVLLYLFIPKGFFPLQDNGLLQGTIE 575

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           + Q           ++     +     +++A    ++     +       T++  +    
Sbjct: 576 TSQSISYQAMVEKQQQVVEKLIDDPAVENIASFVGIDGSNATLNTGRLQITLKPLDQRDS 635

Query: 660 KISRELIRKGIVGVIISAIAMLIYI 684
           +I   + R  +   + S   + +Y+
Sbjct: 636 RIDEIIPR--LQARVASIAGITLYL 658



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 76/222 (34%), Gaps = 12/222 (5%)

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            + +           + +  Q    V      + ++  + ++V          +    + 
Sbjct: 275 PENNQLGAWANNQQAIIINVQRQPGVNVIETTDNIRNLLPDLVSNLPKSVNVEILTDRTT 334

Query: 664 ELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
            +          +G+ I+ + M+IY+++R      L     + L +  T       G   
Sbjct: 335 TIRASVKDVQFELGLAIALVVMVIYLFLRNGV-ATLIPSIAVPLSLVGTFAVMYFCGFSV 393

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           N   + A+    G+ V+D +VV + +    +             K   E     +  + +
Sbjct: 394 NNLTLMALTIATGFVVDDAIVVIENI---SRYLERGDKPLTAALKGAGEIGFTIISLTFS 450

Query: 779 AFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
               ++P+   G   G +   FAI +A  I+++A  S+ +  
Sbjct: 451 LIAVLIPLLFMGDIVGRLFREFAITLAVAILISAVVSLTLTP 492



 Score = 45.1 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 80/217 (36%), Gaps = 8/217 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E+       +      +    +  VK+   +I     I              +   +  +
Sbjct: 811  EQFPATTFSFNVAKDASLEAAVNAVKQAEEQIAMPKDITTQFQGATLAFESALSSTLWLI 870

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            I + +AM I + + ++ +   +  ++TL    +   L   A  G E ++ A+  ++ LIG
Sbjct: 871  IAAIVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALMA-AGNELDIIAIIGIILLIG 929

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                + +++ D            +S  + I ++        + T+MAA +  LP+ +   
Sbjct: 930  IVKKNAIMMID--FALAAEREQGLSPYEAIYQACLLRFRPILMTTMAALLGALPLMLSTG 987

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             G  +     + M  G++++   ++F    I L    
Sbjct: 988  VGAELRQPLGVCMVGGLIMSQILTLFTTPVIYLLFDK 1024


>gi|167551077|ref|ZP_02344832.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205324026|gb|EDZ11865.1| multidrug resistance protein MdtB [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 1040

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAILLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNLPIYSKVNPADPPIMT-LAVTSNAMPMTQVEDMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|319427253|gb|ADV55327.1| acriflavin resistance protein [Shewanella putrefaciens 200]
          Length = 1046

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 56/580 (9%), Positives = 157/580 (27%), Gaps = 38/580 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGFVS-----FTKLSVREMPDVESPVVT---------ISTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SAAIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D K  ++          V    +    I    + +    R   D+  +     
Sbjct: 115 AQRRLPEDAKDPVVSKDNGSGEPSVYVNLSSS--IMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   ++                         N  
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDITNALRKE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 214 TPGGQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNLSLGIITQSDANPLVVAQEVHKEVDRVQNFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++ G ++ L ++  ++
Sbjct: 334 VYNTLFVTGALVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVVENIFHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   +++     +     +   F   + +
Sbjct: 454 GMVGLLFTEFSVMLAVSVMFSSLIALTLTPVLSSKLLKANVKPNRFNRWVDSGFARMEKV 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
               +        I+ L  +  I                 
Sbjct: 514 YRAAVSRAIQFRLIAPLVILACIGGSAWLMQQVPSQLAPQ 553



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 89/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IV 671
             + L            V + V K++  +        + +V    +  + R        +
Sbjct: 279 VNLSLGIITQSDANPLVVAQEVHKEVDRVQNFLPEGTSLVVDFDSTVFIDRSINEVYNTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        +FG   NL  + A++  IG
Sbjct: 339 FVTGALVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVMFSSLIALTLTPVLSSKLLKANVKPNR 498



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 699  TLILDITKTLGFFA-LFGIEFNLTAV-----AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L++  T  +G F    G+      +       ++ LIG    + +++ +      +L  
Sbjct: 878  PLVVMFTVPMGVFGGFLGLLITSQGINIYSQIGMIMLIGMVTKNGILIVEFAN---QLRD 934

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                    I  +    L   + T+    +  +P+      G     +    + FG+  A 
Sbjct: 935  RGFELDKAIIDASTRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFAT 994

Query: 810  SSSIFIAAPILLFI 823
              ++F+   +   I
Sbjct: 995  FVTLFVIPAMYRLI 1008


>gi|295396085|ref|ZP_06806268.1| protein-export membrane protein SecF [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971026|gb|EFG46918.1| protein-export membrane protein SecF [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 333

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 134/310 (43%), Gaps = 13/310 (4%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L     +I F+      + I+ +  I S+ +    G N GI F+GG +  +
Sbjct: 2   KRFFEFGNRLHSGETSIPFVGKGKLWLSIATVLVILSLLIPVVGGFNLGIAFRGGSEFEI 61

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +  D                +      + +  +  +       +   + ++ +  I+
Sbjct: 62  SNVKSNDPQPGIDATNKTVGHAEATGVPRSDTSVRIETRQL-----SDEEMQKVREALIS 116

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                +    +  VGP   +++  K    ++I  +  +I + + F+ W  +L AI  L  
Sbjct: 117 AYSVDNKDVTSNFVGPLWGQDITNKMTRALVIFVVISMIVMALYFRTWKMSLAAIAGLFF 176

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDL 760
            +  T+G ++  G E    AV   LT++ +S+ D VVV+D++R+N   +T     +F +L
Sbjct: 177 VMITTMGIYSASGFEVTPEAVIGFLTVLSFSLYDTVVVFDKIRENTTDFTKNRKQTFGEL 236

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           ++  +N+T  RS+ T++ + + +  +      + G   +   A+ +  G + AA+S++F+
Sbjct: 237 VNLGVNQTTVRSINTTVISILPIASILFIGVFMLGAGTLVDIALSLFVGTITAAASTLFV 296

Query: 816 AAPILLFIYD 825
           A+P+  F+  
Sbjct: 297 ASPLYYFLRK 306


>gi|293603188|ref|ZP_06685621.1| multidrug RND efflux transporter [Achromobacter piechaudii ATCC
           43553]
 gi|292818419|gb|EFF77467.1| multidrug RND efflux transporter [Achromobacter piechaudii ATCC
           43553]
          Length = 1032

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 59/535 (11%), Positives = 141/535 (26%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G +           +   P                    +     
Sbjct: 10  RPVATTLAMVAILIAGFIA-----YRMLPVSALPEVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + IT+ F  +   +    +V   +   
Sbjct: 56  PDVMTSLVTSPLERQFGQMPGLNQMSSTSSGGASVITMQFNLTLPLDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D              + VL+   I        +    +  +   ++        
Sbjct: 116 SNLLPSDLPVPPTYNKVNPADAAVLT-LAITSPTMPLPQVRDLVDTRVAQKLSQIPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +    V  N ++            +      
Sbjct: 175 VSVAGGQRPAVRVQVNPQALAANGLAMSDLRTAIVGANVNQPKGNLDGPLRSTTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                      D+                   +          
Sbjct: 235 LKSPTD--------------------YNDLIIAYKNNAPLRLSDVARAVEGAEDTRQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +     L   LRA         V          S    
Sbjct: 275 AGDKPAILLNIQRQPGANVIDVVNRIQTLLPQLRAALPATLDVTVVSDRTQTIRDSVEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K    +   LV++V F+ +      L+    + L+++ T  ++ L G ++   ++  + +
Sbjct: 335 KFEMLLAVALVVMVTFVFLRSLTATLIPSVVVPLSLVGTFGIMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G S+   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMIENIARHIEEGETPMQAALKGASQIGFTLISLTFSLIAVLIPLLFMTE 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G   R FAIT+ +SILIS+  ++++   M   ++R +  +       +    I
Sbjct: 455 VVGRLFREFAITLAVSILISLVVSLTLTPMMCARLLRAESEQKHGRFHTATGNFI 509



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 75/229 (32%), Gaps = 10/229 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               +++  + + Q         + L  Q         V+  ++  + ++          
Sbjct: 258 DVARAVEGAEDTRQAAWAGDKPAILLNIQRQPGANVIDVVNRIQTLLPQLRAALPATLDV 317

Query: 656 IVGPKISRELIRKG----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            V    ++ +           ++  A+ +++           L     + L +  T G  
Sbjct: 318 TVVSDRTQTIRDSVEDVKFEMLLAVALVVMVTFVFLRSLTATLIPSVVVPLSLVGTFGIM 377

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   N   + A+    G+ V+D +V+ + +    +      +      K  ++    
Sbjct: 378 YLAGFSINNLTLMALTIATGFVVDDAIVMIENI---ARHIEEGETPMQAALKGASQIGFT 434

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +  + +    ++P+       G +   FAI +A  I+++   S+ +  
Sbjct: 435 LISLTFSLIAVLIPLLFMTEVVGRLFREFAITLAVSILISLVVSLTLTP 483



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 91/264 (34%), Gaps = 6/264 (2%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                         +         V  S++  +  G         ++  +V + +      
Sbjct: 758  QPQFQMNPAALGQIHVPTAAGTQVPLSSVAHISEGRTVLAVNRLDQFPMVTVSFNLAPGA 817

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            + +  +E +     EI   ++++          +  +   +  ++ + + M I + + ++
Sbjct: 818  SLSNAVEAITAAEAEIGMPASVETRFQGAALAFQNSLTSTLWLILAAVVTMYIVLGVLYE 877

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   +  ++TL       L    + G E ++  +  ++ LIG    + +++ D      
Sbjct: 878  SYIHPITILSTLPSAGVGALLALLISGTELDMIGIIGIILLIGIVKKNAIMMIDFALD-- 935

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S R  I ++        + T++AA    LP+ +    G  +     + M  G+
Sbjct: 936  AERKRGLSPRAAIHEAALLRFRPILMTTLAALFGALPLMLSTGTGAELRQPLGLVMVGGL 995

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +++   ++F    I L       +
Sbjct: 996  LLSQVLTLFTTPVIYLMFDRLSRR 1019


>gi|254488225|ref|ZP_05101430.1| RND transporter, HAE1/HME family, permease protein [Roseobacter sp.
           GAI101]
 gi|214045094|gb|EEB85732.1| RND transporter, HAE1/HME family, permease protein [Roseobacter sp.
           GAI101]
          Length = 1021

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 83/695 (11%), Positives = 192/695 (27%), Gaps = 54/695 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    + L+ ++C IGL+        +  + +FP+                 ++     
Sbjct: 9   RSPVPSLALFLVLCLIGLV-----GFFRLPVTQFPNIDIPIVT---------VNIAQPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S +                +T+ F            +   + G
Sbjct: 55  APTEIATQIVKPVEGAVSDVTGVKHVTAVASDGSASLTIEFELETDSATALTDIKDAVAG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +  + ++        +I+    +         + S  +      ++ + +   
Sbjct: 115 VQGDLPDNATEPIIKRLDVTGQAILTYAVS--DPTQSIQDLSYFVDEIVARELQVEKGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +  E DP RL  L  T A ++      N    G    +     S     
Sbjct: 173 KVTRIGGGDRAIEVELDPDRLLSLGLTAADVNSQLRQNNIDLGGGSGDLGGQEYSIRALG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +++   +                         +         +           
Sbjct: 233 SADTVAQLAATPIIT--------------------APGQTVRLDDLGKVFDGATETSSFA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +           S     + A    A L           + +       G+   
Sbjct: 273 MLDGQPVVAFGVFRSTGASDLAAGDNAKERLAELAEEYPNASF-ALIDDATVYTEGNYHS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  ++   ++ L++I T  ++  LG +L   S+ GI 
Sbjct: 332 AMDTLYEGAALAIIVVFLFLRNWRATIITAVALPLSIIPTFMVMQYLGFSLNTVSLLGIT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L  G+ VD  I+  E I    +  +  + + +   S    T+   + T +     + F  
Sbjct: 392 LVTGILVDDAIVEIENIVRHIQMGKPAYEASEEAASEIGLTVIAISFTIVAVFAPVSFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +++L S+  A  I   M  + +R       +             +
Sbjct: 452 GIAGQYFKQFGLTVAVAVLFSLLVARLITPMMAAYFLRDGIAPEEEEKDGFIMRRYMGVL 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN- 597
                      +    +F+                  +G   + +       L   R+  
Sbjct: 512 GWTLRNRTLTLLLGLAIFAGSIFSATLLPTEFVPAADRGRSTVSLELPPGSTLDQTRAQG 571

Query: 598 ------LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                 L  +      F       +    L    G    + R   ++++++ +I+     
Sbjct: 572 RQVSAILAQIPEITNVFVEGGTSSDTKANLIVNYGQKDERDRSSFVIEEQMKQILQGIPD 631

Query: 652 QNTEIVGPKISREL-------IRKGIVGVIISAIA 679
               ++     R+L                IS  A
Sbjct: 632 VKINVLKDNGQRDLQLNVLGDTEAAASATAISLAA 666



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +A+A+++       W   +     L L I  T       G   N  ++  +  + G  V
Sbjct: 339 GAALAIIVVFLFLRNWRATIITAVALPLSIIPTFMVMQYLGFSLNTVSLLGITLVTGILV 398

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--- 791
           +D +V  + +   ++         +  +++ +E     +  S        P++   G   
Sbjct: 399 DDAIVEIENI---VRHIQMGKPAYEASEEAASEIGLTVIAISFTIVAVFAPVSFMSGIAG 455

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                F + +A  ++ +   +  I   +  +   
Sbjct: 456 QYFKQFGLTVAVAVLFSLLVARLITPMMAAYFLR 489



 Score = 41.6 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 83/251 (33%), Gaps = 7/251 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +         V  S +  +++          ++ +   ++             E V    
Sbjct: 753  LRVPSTTGAPVPVSVVADVRLSSGPSTIERYDRQYRTSVEADLAPGAPLGPATEAVMALP 812

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                             ++  E+  +  + +    + + + + + F  +   +  + +L 
Sbjct: 813  LAQSMPEGTAIQSAGDAEVMGEVFTQFALAMGAGILLVYVVLVLLFSSFITPVTILMSLP 872

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   +    L      L+ V   L L+G    + +++ +   +        ++  + +
Sbjct: 873  LAIGGAIFALYLNNSAIGLSVVIGFLMLMGIVTKNAIMLVEFAME---AMAHGVTKSEAM 929

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++ ++     + T++A    ++P A+    GG      AI +  G++++   S+     
Sbjct: 930  LQAGHKRARPIIMTTVAMTAGMVPSALAVGAGGEFRAPMAIAVIGGLLLSTLLSLLFVPS 989

Query: 819  ILLFIYDWRAK 829
            +   +   + +
Sbjct: 990  LFSVMDGLKDR 1000


>gi|92113635|ref|YP_573563.1| acriflavin resistance protein [Chromohalobacter salexigens DSM
           3043]
 gi|91796725|gb|ABE58864.1| acriflavin resistance protein [Chromohalobacter salexigens DSM
           3043]
          Length = 1037

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 63/514 (12%), Positives = 142/514 (27%), Gaps = 37/514 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I  +GLL        +  +   P+      +             L   
Sbjct: 9   RRPVATTLLALGIVLLGLLA-----YQRLPVAPLPNVSFPTIV---------VSANLSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S      +I + F   +     A +V   +  
Sbjct: 55  NPETMASTVATPLERSLGRIAGISQMTSSSSDGSTRIIVQFDLDKDINVAAREVQAAINN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L                 + ++   ++        E       +    I       
Sbjct: 115 AQPLLPSGMTSRPSYRKMNPAAAPIMI-LSVTSDTLPTSELYRLADERIAPPILQVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP RL     +   ++        S           R       
Sbjct: 174 DVNVGGSSSPAVRVSLDPRRLEHAGVSLTAVANAIRSATTSTPTGFVASPASRWEVDTDS 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +                ++   +    +  
Sbjct: 234 QLMRAAA-------------------FEDLVVARGEDGAVMHLGDVADLEDGVEDRYNVG 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + S  +  +   TI       A L +         V+         S   
Sbjct: 275 FQNDQPAVLLVISASSGANVIETIAGIRERMATLESQLPQSASLSVQLDRAPGIRASLHE 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +   +  L+   +I +++I T A++ ++G +L   S+  ++
Sbjct: 335 TQLTLMLAIALVVLVVFLFLRNARATLIPSLAIPVSLIGTFAMMHVMGFSLDTLSLMALI 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E I     ++     +   G      T+   +++ +   V L F G
Sbjct: 395 VSIGFLVDDAIVVVENIARHIERDMPPLRAALQGAREVGFTVTSMSVSLVAVFVPLLFLG 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMI 512
              G     FA+T+ L++L+S+  ++++   +  
Sbjct: 455 GFIGRMFFEFAMTLSLAVLVSLVVSLTLTPMLCA 488



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 6/132 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     + + +  T     + G   +  ++ A++  IG+ V+D +VV + +    + 
Sbjct: 358 RATLIPSLAIPVSLIGTFAMMHVMGFSLDTLSLMALIVSIGFLVDDAIVVVENI---ARH 414

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVV 807
               +       +   E        S++     +P+   G   G +   FA+ ++  ++V
Sbjct: 415 IERDMPPLRAALQGAREVGFTVTSMSVSLVAVFVPLLFLGGFIGRMFFEFAMTLSLAVLV 474

Query: 808 AASSSIFIAAPI 819
           +   S+ +   +
Sbjct: 475 SLVVSLTLTPML 486



 Score = 45.5 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 87/256 (33%), Gaps = 12/256 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A   + +S      +S     ++ Q           L        A  R+ + V     
Sbjct: 773  EAGDSIPVSAFSHLEQSTSPVSVNHQGQFASSTVSFNLAEGVSLGEATERIRQAVNDLRP 832

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                    + +        + +       ++ + + + + + I ++ +   L  ++TL  
Sbjct: 833  PTALQVDFEGSAATFQSGMQAM----PWLILAALVTVYLVLGILYESYIHPLTILSTLPS 888

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                 L    L    F L A+  ++ LIG    + +++ D            +   + + 
Sbjct: 889  AGVGALLALMLLDTPFTLIALIGIILLIGVVKKNAIMLVD--FAVSAERERGLDALEAVR 946

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++        + T++AA +  +P+ +       +     I +  G++++   +++    +
Sbjct: 947  EAALVRFRPIMMTTLAAILGAVPLLLGTDENAALRAPLGITIIGGLILSQVLTLYTTPVV 1006

Query: 820  LLFIYD--WRAKNARI 833
             L++     R + AR+
Sbjct: 1007 YLYLDRLHRRLRPARL 1022


>gi|209521355|ref|ZP_03270069.1| acriflavin resistance protein [Burkholderia sp. H160]
 gi|209498214|gb|EDZ98355.1| acriflavin resistance protein [Burkholderia sp. H160]
          Length = 1105

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 70/583 (12%), Positives = 154/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+         +  +   P                     L    
Sbjct: 10  RPVATTLLAIGIALSGIFA-----FTKLPVAPLPQVDFPTI---------SVQATLPGGS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +ITL F  +R  +  A  V   +   
Sbjct: 56  PETVATSVASPLERHLGSIADVTEMTSQSSVGSTRITLQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N          + +L    +      A +            +   +   +
Sbjct: 116 RADLPTSLRSNPTYHKVNPADAPILI-LALTSRTLTAGQLYDSAATVLQQSLSQVQGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E  P  L         +       N +                    
Sbjct: 175 VDVSGSANPAVRVELLPHALSHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G +      N          D+                 +   +  + +  +
Sbjct: 217 --KGAIEFGENRVQLYTNDQASKASQYKDLVIAYRNGAPVKLSDMGEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   T++    +   L A                    S    
Sbjct: 275 FNGQQSVLVILYRQPGANIIETVDRVKAMLPQLHASLPADVDVTPTSDRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T  I   LV++V+F+ +   +  L+   ++ +++I T   + L+G ++   S+  + +
Sbjct: 335 GRTLVIAVALVVMVVFLFLRNFRATLIPSVAVPISIIGTFGAMYLMGFSIDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +  +G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIEDGVPRMKAAFLGAREVGFTVMSISISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R    K  +             + 
Sbjct: 455 IVGRLFREFALTLSLAIAVSLVVSLTLTPMMCSRLLREPHEKVKENRFGRWLERGFTSMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +   +   I  +  +  +   Y +  KG     
Sbjct: 515 SGYERTLGWALRHPLPIVIVLLLTIALNVALYIVVPKGFFPQQ 557



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 83/242 (34%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV LS +   ++S++           +   ++  +    + +     ++ + 
Sbjct: 245 VIAYRNGAPVKLSDMGEVVDSVEDLRNLGLFNGQQSVLVILYRQPGANIIETVDRVKAML 304

Query: 640 KKITEIVPLSTIQNTEI-VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            ++   +P              I   L   G   VI  A+ +++       +   L    
Sbjct: 305 PQLHASLPADVDVTPTSDRSTTIRASLKDTGRTLVIAVALVVMVVFLFLRNFRATLIPSV 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + I  T G   L G   +  ++ A+    G+ V+D +VV + +    +     +   
Sbjct: 365 AVPISIIGTFGAMYLMGFSIDNLSLMALTIATGFVVDDAIVVLENI---SRHIEDGVPRM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
                   E     +  S++     LP+ + GG V      FA+ ++  I V+   S+ +
Sbjct: 422 KAAFLGAREVGFTVMSISISLVAVFLPILLMGGIVGRLFREFALTLSLAIAVSLVVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 TP 483



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 97/238 (40%), Gaps = 7/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S   G          +     + +     V+ +   + +   + +I   +TI  + 
Sbjct: 854  SAIASFGPGTTPLSVNHQSQFVASTISFNLPPGVSLSTATQAIYDTMAQIGMPATIHGSF 913

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++ +    + ++ +  A+ I + I ++ +   L  ++TL       L    LF
Sbjct: 914  QGTAQAFQQSMSDQPILILAALAAVYIVLGILYESYIHPLTILSTLPSAGVGALLALLLF 973

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              EF++ A+  V+ LIG    + +++ D   +  +     +S RD I ++        + 
Sbjct: 974  NTEFSIIALIGVILLIGIVKKNAILMVDFAIEASRQ---GMSSRDAIYQACLLRFRPIMM 1030

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+ AA +  LP+A  GG    +     I +  G++V+   +++    + L++   R +
Sbjct: 1031 TTFAALLGALPLAFGGGEGAEMRAPLGISIVGGLIVSQMLTLYTTPVVYLYMDRIRVR 1088


>gi|187733235|ref|YP_001879804.1| multidrug efflux system subunit MdtC [Shigella boydii CDC 3083-94]
 gi|226700785|sp|B2TYA7|MDTC_SHIB3 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|187430227|gb|ACD09501.1| multidrug resistance protein MdtC [Shigella boydii CDC 3083-94]
          Length = 1025

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIVGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFDALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|116329363|ref|YP_799083.1| AcrB family efflux transporter [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116122107|gb|ABJ80150.1| Efflux pump, AcrB family [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 1051

 Score =  154 bits (387), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 76/583 (13%), Positives = 154/583 (26%), Gaps = 35/583 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  +  ++ + I   G +        +  + + P                   L L   
Sbjct: 8   QNPIFSWMMMAAIIIFGSV-----GFSRMGVSQMPDVDFPVV---------NVSLTLVGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    ++               IT+    SR  +    ++   L  
Sbjct: 54  NAQVMETDVVDPIEEALMAVEGVTEVRSISSDGSATITVELELSRNVDVAVQEIQTKLAQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V++KL  +    ++  +   ++ I+              E+ + +     D+        
Sbjct: 114 VSNKLPEELDPAVITKSNPDDVPIIWVSVTAVDKTE--KEKMLFVKDFLKDKFQEISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +    +   +    DP RL +       +       N          R    S     
Sbjct: 172 EIILGGYVDRTINVYLDPLRLSRNEIAVDDIVNTLKEQNLEVPSGRLENRTNEISLRAVG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +   I LN  +                     R         +   L  +    
Sbjct: 232 EVPTAEQFGNIFLNSRSG----------------SPLFRSIRLKDIATVEDGLGEIRRIS 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L+          V   N G    S + 
Sbjct: 276 RFNGISAVAIGIKKLKGANAVQVGDLVKAKVQELKPKLPKGYDLTVSNDNTGYIRDSVNE 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A L   V  + +   K       +I  +VI T   L   G T+   ++ G+ 
Sbjct: 336 LEFTLIFSAILTGFVCRLFLGNWKSTGNVLLAIPTSVIGTFLFLYFAGFTVNTFTMLGLS 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+V E I   +   +S F +   G          + +      + + F  
Sbjct: 396 LATGIVVDDAIMVLENITRHHEMGKSWFKAALEGALEIRFAALAATLAVAAIFLPVAFMK 455

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    F IT+ +++L+S+F A+S            KK         S F       
Sbjct: 456 GIIGRYFLEFGITISVAVLLSLFEALSFTPMRSSLYREDKKDNKKKTYLFSVFSADMRES 515

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +++        +  +           +  +     K    +
Sbjct: 516 WNRWISRISVFKRMDPIIERFLDYSTDLYARSIDFVLKYPKSI 558



 Score = 43.5 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 37/332 (11%), Positives = 97/332 (29%), Gaps = 14/332 (4%)

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
            + R + +++   +  ++          L    + +   R       IS+          
Sbjct: 178 YVDRTINVYLDPLRLSRNEIAVDDIVNTLKEQNLEVPSGRLENRTNEISLRAVGEVPTAE 237

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
               +         +   +       +      +  +   +       G K        Q
Sbjct: 238 QFGNIFLNSRSGSPLFRSIRLKDIATVEDGLGEIRRISRFNGISAVAIGIKKLKGANAVQ 297

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIY 683
            GD       ++ +K K+ +   L+   +          EL    I   ++   +     
Sbjct: 298 VGD--LVKAKVQELKPKLPKGYDLTVSNDNTGYIRDSVNELEFTLIFSAILTGFVC---- 351

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
                 W      +  +   +  T  F    G   N   +  +    G  V+D ++V + 
Sbjct: 352 RLFLGNWKSTGNVLLAIPTSVIGTFLFLYFAGFTVNTFTMLGLSLATGIVVDDAIMVLEN 411

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIP 800
           +    + +    S+     +   E    ++  ++A     LP+A   G +      F I 
Sbjct: 412 I---TRHHEMGKSWFKAALEGALEIRFAALAATLAVAAIFLPVAFMKGIIGRYFLEFGIT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++  ++++   ++    P+   +Y    K+ +
Sbjct: 469 ISVAVLLSLFEALSF-TPMRSSLYREDKKDNK 499



 Score = 37.7 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 74/219 (33%), Gaps = 8/219 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                    +          V      +I   +       +     K ++E      + + 
Sbjct: 837  NRERAIRVFGNPAPALGQTVSTERALEIAREILPDGYSVSITGSAKTAKESGESLTLALT 896

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +   + +  +F      L  +  +    T  L    LFG  FN+ +   ++ L+G  
Sbjct: 897  FGILLSYMILASQFNSLKQPLYILLAMPFSFTGALVSLYLFGQSFNMYSFIGLILLLGLV 956

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ + +     + +T  + R+ + +     L   + TS ++  + +P A+    G
Sbjct: 957  KKNSILLVEFVN---HVRSTGKNVRESVKEGCTIRLRPVLMTSFSSIAAAIPPALALGPG 1013

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                   A+ +  G+ ++   ++ +      ++ +   +
Sbjct: 1014 AETRIPMAVTILGGMTLSTLITLLVVPA-AYYLGEKEKR 1051


>gi|121605858|ref|YP_983187.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
 gi|120594827|gb|ABM38266.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
          Length = 1032

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 74/595 (12%), Positives = 176/595 (29%), Gaps = 40/595 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ ++   GL+        +  +  FP                     LE  
Sbjct: 9   RNPVPAILLFVLLTVFGLI-----GFQKLQIQDFPDMDLPTIT---------VSASLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L        ++      I++SF   +  E    +V   +  
Sbjct: 55  APSQLETEVARKIEDKLASLTMLDHITTTITDGAVNISVSFELEKNAEAALSEVRNAVDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L        +  +T    S++    +         + S  +  +    +   +   
Sbjct: 115 ARADLPSGMASPTVSKSTSAGSSLLT--FSATSGKLDEQDLSWFVDNELNKALLSVKGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  I  ++  + DP+ +  L  + + +S           G    +   R S     
Sbjct: 173 SSKRMGGIDREVHIDLDPALMAGLGISPSVVSTQLKAAQKDGSGGQGDIAGQRQSARTLA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            VE    +S + +                         R         I    A      
Sbjct: 233 AVESVESLSAMSIAL--------------------GDGRYVRLDQIARISDTHAERSSLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          + +++   + T+      A      + P  +       V     + S 
Sbjct: 273 FVDGKPAVGVQVT-RSKGYSDVTVSREVRAAVKAFGLAHPEVVLAEISTTVTPIEDNYSG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V++  +   +  LVA  ++ L++I T   + L G +L   ++  + 
Sbjct: 332 SMELLLEGALLAVLVVWWFLRDWRSTLVAAAALPLSIIPTFGFMYLAGFSLNTVTLLSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIARHLRMGKTPYQAAMEAADEIGLAVIATTFTLVAVFLPTAFMS 451

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T  +++L S+  A  +   M  ++++ K ++  +    +       C+
Sbjct: 452 GVVGLIFRQFGVTASVAVLASLLVARLLTPMMAAYLLKGKSVQEQEAKDGALMTRYLGCV 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +  +   +   + F      + F     +        Q+ +       L  
Sbjct: 512 GKCLVWRKSAMLAALVFFLAALAMIPFLKTGFFPAQDNSQTQVTLTMPPGGTLED 566



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           W    W   L A   L L I  T GF  L G   N   + ++  ++G  V+D +V  + +
Sbjct: 349 WFLRDWRSTLVAAAALPLSIIPTFGFMYLAGFSLNTVTLLSLSLVVGILVDDAIVEIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +      +      ++ +E     + T+       LP A   G V      F +  
Sbjct: 409 ---ARHLRMGKTPYQAAMEAADEIGLAVIATTFTLVAVFLPTAFMSGVVGLIFRQFGVTA 465

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWR 827
           +  ++ +   +  +   +  ++   +
Sbjct: 466 SVAVLASLLVARLLTPMMAAYLLKGK 491



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 67/181 (37%), Gaps = 6/181 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
            +  E    +   EL     + + I    +   + + F  +      +  L L +   L  
Sbjct: 832  KRVEQGELQRQSELFDSFGLAMAIGIFCIYAVLVLLFHDFLQPATILCALPLSLGGALFA 891

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              +    F++ A+  +L L+G    + +++ +     M      +S  D +  + ++   
Sbjct: 892  LWVSNQSFSMPAIIGLLMLMGVVTKNSILLVE--YAIMARREQGMSRFDALMDACHKRAQ 949

Query: 771  RSVYTSMAAFISVLPMAV-WGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T++A    +LP A+  G         AI +  G++ + +  + +   +  ++ D  
Sbjct: 950  PILMTTIAMAFGMLPNALGMGAEPSFRQPMAIVVIGGLLASTALCLLVIPVVFTYVDDAE 1009

Query: 828  A 828
             
Sbjct: 1010 Q 1010


>gi|116670845|ref|YP_831778.1| preprotein translocase subunit SecF [Arthrobacter sp. FB24]
 gi|116610954|gb|ABK03678.1| protein translocase subunit secF [Arthrobacter sp. FB24]
          Length = 340

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 137/296 (46%), Gaps = 13/296 (4%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            + W +  ++  ++  +  +   G N GI+F+GG +  V   +  + S+    ++ +  G
Sbjct: 25  KKIWFLIAAVAVALSILLPVAKGGFNLGIEFRGGSEFTVSNVKTTEASLGEKAVQDVVEG 84

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            I            ++      D +     L + +   T          +  VGP    +
Sbjct: 85  SIPRVANVAGNTMRIQT-----DKLTDDETLRIKEGLTTAYGVTDNEVTSTFVGPTWGAD 139

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           + ++ ++G++I  +   + + + F+ W  +L A+  +++ +  T G +AL   E   +A+
Sbjct: 140 VTKQALLGLVIFVVIAAVLMALYFRTWKMSLSALVGMLVTMFITAGVYALSDFEVTPSAI 199

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSMAAFI 781
              LT++ YS+ D VVV+D++R+N       T  +F + ++ ++N+TL RS+ T M A +
Sbjct: 200 IGFLTVLSYSLYDTVVVFDKIRENTADIDASTRRTFAEEVNLAVNQTLVRSINTMMVAIL 259

Query: 782 SVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V  +        G   +   ++ +  GI++  +++IFIAAP+  ++     +  +
Sbjct: 260 PVGAILFIGAGLLGAGTLRDLSLALFVGILIGTAATIFIAAPLYAWLRQGEPQLVK 315


>gi|51894410|ref|YP_077101.1| AcrB family membrane transporter [Symbiobacterium thermophilum IAM
           14863]
 gi|51858099|dbj|BAD42257.1| AcrB family membrane transport protein [Symbiobacterium
           thermophilum IAM 14863]
          Length = 1028

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 77/624 (12%), Positives = 180/624 (28%), Gaps = 56/624 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               ++LY +   IGL+      L +  LD +P+      +              E    
Sbjct: 12  PVPTIVLYLITAVIGLVS-----LSRLPLDLYPAMEFPLAV---------VATTYEGAGP 57

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    +E+   +        S  +  + + + F      +     +   +  V 
Sbjct: 58  EEVEAHVSRPIEEVVGTVPGVTKVRSSSSEGTSLVIVEFDYGTDMDQAGLSIREKVDQVK 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L       ++       + +V         ++     + +II+ R++++   +     
Sbjct: 118 GYLPAGVGSPMVFKIDPTALPVVTVGVTGSDDLAELKALAEDIIKPRLERL---DGVASV 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             +  +  ++    DP+RL+    + + ++      N +  G   G   +          
Sbjct: 175 DVNGGLEREIQVVVDPARLQAFGLSMSSVAQVLGYENLNLPGGQVGEGSVNLLVRTVGQY 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +   EI  I L                                   +    A       L
Sbjct: 235 QSLDEIRDIRLGT-------------------------VRLGDIAEVRDTFADPETKVWL 269

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       ++  +              + A         +        + S     
Sbjct: 270 DGRAAVSLDVQKQSGGNAVAVANAVKAELKKIEAELPGQVQTRILSDTSRMVVTSLESVA 329

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                 A L ++VL   +           SI + VI T   +   G TL + S+ G+ LG
Sbjct: 330 TNGLQGAVLAILVLLFFLRNLPATFAIAVSIPVAVISTFGPVYFAGITLNIISLGGLSLG 389

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG- 482
           +G+ VD++I+V E I       + +  + + G +     I  S +T++   + + +  G 
Sbjct: 390 VGMMVDNSIVVLENIFRHKEMGKDIVQAAEDGTAEVSLAITASTLTSVAVFLPVVWVTGL 449

Query: 483 --GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC--- 537
                R  A+T+  S+L+S+ TA+++V  M   +++ +  +      +     I      
Sbjct: 450 AQLFFRELALTISFSLLMSLLTAVTLVPMMAPRLLKDRPARRQIPWAVRLSDRIGQWLER 509

Query: 538 --------IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +              +    + ++ L                ++ +      
Sbjct: 510 LEATYGRLLDWALGHRWHVVGIGASFLVLIALVLGQMGLEFIPSSDTSQFRVSIELAPGT 569

Query: 590 DLSVVRSNLESLQIGDISFQNFDG 613
            L   ++ +E              
Sbjct: 570 RLDETQAAVEEAVAQIQDIPELQS 593



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 64/168 (38%), Gaps = 6/168 (3%)

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              G+  + +A+L+ ++             ++ + +  T G     GI  N+ ++  +  
Sbjct: 329 ATNGLQGAVLAILVLLFFLRNLPATFAIAVSIPVAVISTFGPVYFAGITLNIISLGGLSL 388

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL-PMA 787
            +G  V++ +VV + +    +            +    E       +++ +    L  + 
Sbjct: 389 GVGMMVDNSIVVLENI---FRHKEMGKDIVQAAEDGTAEVSLAITASTLTSVAVFLPVVW 445

Query: 788 VWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           V G + +     A+ ++F ++++  +++ +   +   +   R    +I
Sbjct: 446 VTGLAQLFFRELALTISFSLLMSLLTAVTLVPMMAPRLLKDRPARRQI 493



 Score = 42.8 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 57/158 (36%), Gaps = 4/158 (2%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           E    V              V+  +K ++ +       +       ++  E +   +  +
Sbjct: 798 EDQMRVVKIIGQIYGRDLGSVINDIKARLADFPLPPGYEIAYGGDYELMEEAMTGLVQTL 857

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           I S   + + +  +F+ +      + ++ L +   +    L G   +++A+  ++ L G 
Sbjct: 858 IFSVALVYLVMAAQFESFLHPFVILFSIPLALVGAVLGLVLTGRSMDMSAMIGLILLAGV 917

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            VN+ +V+ D +    +L    +   + +  +    L 
Sbjct: 918 VVNNAIVLVDYIN---QLRRQGMDRDEAVRLTGPRRLR 952


>gi|229590214|ref|YP_002872333.1| multidrug efflux system transmembrane protein [Pseudomonas
           fluorescens SBW25]
 gi|229362080|emb|CAY48982.1| multidrug efflux system transmembrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 1035

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 58/524 (11%), Positives = 147/524 (28%), Gaps = 38/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   I  +G +           +   P       +             L   
Sbjct: 9   RRPVATMLLSLAIMLLGGVS-----FNLLPVSPLPQIDFPVIV---------VSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S  Q   ++ L+F   R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSFGAIAGITTMSSSSSQGSTRVILAFDSDRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKINPSQAPIMV-LSLTSDVLQKGQLYDLASTILSQSLSQVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q       +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPKALDQYGVALDDVRNTIANANQRRPKGSLEDSQRNWQIQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 I   +    +  
Sbjct: 234 QLEKAKD--------------------YEPLLIRYQNGAALRLGDVAKISDGVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + ++  +   T+         L+A         +          +   
Sbjct: 274 FFNNDSAVLLVINRQSGANIIETVRQIKAQLPALQAVLPSSVKLSLAMDRSPVITATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I  GLV++V+++ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVGLVILVVYLFLGNFRASLIPTLAVPVSLVGTFAIMYLYGFSLNNFSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIDEGVPPMKAAYLGAEEVGFTLLSMNVSLVAVFLSILFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
                  R F+IT+  +I++S+  ++++   +    ++      
Sbjct: 454 GIVTNLFREFSITLSAAIIVSLIVSLTLTPMLCARWLKPHVKDR 497



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 88/250 (35%), Gaps = 7/250 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       + L  V    + ++    S    +     LV  +    + +   R ++   
Sbjct: 245 LIRYQNGAALRLGDVAKISDGVEDRYNSGFFNNDSAVLLVINRQSGANIIETVRQIKAQL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
             +  ++P S   +  +    +    + +  + ++I+   +++ +++    +  +L    
Sbjct: 305 PALQAVLPSSVKLSLAMDRSPVITATLHEAEMTLLIAVGLVILVVYLFLGNFRASLIPTL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T     L+G   N  ++ A++   G  V+D +VV + +    +     +   
Sbjct: 365 AVPVSLVGTFAIMYLYGFSLNNFSLMALILATGLVVDDAIVVLENI---SRHIDEGVPPM 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
                   E     +  +++     L +   GG V      F+I ++  I+V+   S+ +
Sbjct: 422 KAAYLGAEEVGFTLLSMNVSLVAVFLSILFMGGIVTNLFREFSITLSAAIIVSLIVSLTL 481

Query: 816 AAPILLFIYD 825
              +      
Sbjct: 482 TPMLCARWLK 491



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 91/259 (35%), Gaps = 9/259 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV---AQTRV 634
               + +   + +  +  R  L ++   + S  +           +    D        + 
Sbjct: 762  QDPITLNQMQVITSTGARVPLSTIAHYENSLADDRVSHEGQFASENIAFDMAPGVTVEQG 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I ++     +               +     ++ + +A+ + + I ++ +   
Sbjct: 822  TAAIERAIAKVGLPEDVIAKMAGTADAFAATQKGQPFMILGALVAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       +    L G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGAMLAIYLTGGEFSLISLLGLFLLIGVVKKNAILMID--LALQLERND 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             +   + I  +    L   + T++AA +  LP+ +    G  +     + +  G+V +  
Sbjct: 940  GLGPLESIRSACLLRLRPILMTTLAAILGALPLLLGTGDGAEMRRPLGLTIIGGLVFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAK 829
             +++    + L++   R +
Sbjct: 1000 LTLYTTPVVYLYLDRARHR 1018


>gi|237809643|ref|YP_002894083.1| acriflavin resistance protein [Tolumonas auensis DSM 9187]
 gi|237501904|gb|ACQ94497.1| acriflavin resistance protein [Tolumonas auensis DSM 9187]
          Length = 1024

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 78/621 (12%), Positives = 181/621 (29%), Gaps = 44/621 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  M+   GL       L    +  +P                         
Sbjct: 9   RRPVLAVTISLMMVLFGL-----EALRGMAIREYPKVTNTVIT---------VTTNYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +  +         +  ++ IT++   +         V   +  
Sbjct: 55  SADVIQGFISQPVEQAIAQAENIDYMTSRSQLGRSTITVNMRLNTDPNAALADVLAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  +     + ++T    SIV    +  ++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPREADDPSITSSTGSNTSIVYIAFSSAELNSS--QITDYLERVIKPQLFTVPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++     ++ ++       N           F+  +     
Sbjct: 173 KVNLYGGTQFAMRVWLDPLKMGAYNLSSTQVLSVLQSNNYQSAPGQATGYFVLYNAEADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++  + +               V +  +    R         I           
Sbjct: 233 QVNSTEQLEELVVASHDGAVIRLRDIAKVSLEKNHDQYRALANGKEAVI----------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +          L               +   +  A   S   
Sbjct: 282 ---------AAVDSAPSANPLEIAANVRKLLPDFERNLPNTMNMKLLYDSTQAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I  + L+ + G ++ L ++  +V
Sbjct: 333 VLKTIVEAAAIVLVVIALFLGSMRAVVIPIVTIPLSLIGVVMLMQMFGFSINLITLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +  F +  +G     S +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVDRHIKAGEPPFRAAIIGTREIASPVITMTITLAAVYTPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIF-----IIRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ IS   A+++   M        I   +  + ++    S    
Sbjct: 453 GVTGSIFKEFALTLAGAVFISGVIALTLSPMMCSVMLKPHINPNRFERGVENTLNSITSG 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     R     +   I+ ++  +            + +G   +   A    +L  
Sbjct: 513 YSRMLDKVMTRRPVIIIFGIIVLAVMPLLFKLIPAELAPSEDRGAYLMMAKAPNTANLDY 572

Query: 594 VRSNLESLQIGDISFQNFDGE 614
           +++N+ +     +        
Sbjct: 573 IQNNMAAAGETLMKDPAMSTN 593



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 72/229 (31%), Gaps = 7/229 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +                   E            + +     +  +       +P +   
Sbjct: 257 DIAKVSLEKNHDQYRALANGKEAVIAAVDSAPSANPLEIAANVRKLLPDFERNLPNTMNM 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                  +   E I + +  ++ +A  +L+ I +        +  I T+ L +   +   
Sbjct: 317 KLLYDSTQAINESIHEVLKTIVEAAAIVLVVIALFLGSMRAVVIPIVTIPLSLIGVVMLM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +FG   NL  + A++  IG  V+D +VV + +    +                 E    
Sbjct: 377 QMFGFSINLITLLAMVLAIGLVVDDAIVVVENV---DRHIKAGEPPFRAAIIGTREIASP 433

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
            +  ++       P+A+ GG        FA+ +A  + ++   ++ ++ 
Sbjct: 434 VITMTITLAAVYTPIALMGGVTGSIFKEFALTLAGAVFISGVIALTLSP 482



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 88/253 (34%), Gaps = 11/253 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              V A     + +       L+    +  +F+   +  + +        A T + E V  
Sbjct: 762  YYVTAANGQSIPLSNLVTVDLKSEIRALPHFNQLNSATIGIVPIMPMGDAVTWLEENVVS 821

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
            ++        +        + S  +        +++   + + +  +F+ W   L  + +
Sbjct: 822  ELPLGYQHDYMGEARQYVQEGSALMYT-----FLLALCVIFLVLAAQFESWRDPLVIMMS 876

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + L I+  L   A      N+     ++TL+G      +++ +  R+  +     +S  D
Sbjct: 877  VPLAISGALVALAWGLSTMNIYTQVGIITLVGLISKHGILICEVARE--QQLLKGLSKMD 934

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVIGSFAIPMAF--GIVVAASSSIFIA 816
             +  +    L   + T+ A    +LP+    G   +  F+I +    G+ +    ++F+ 
Sbjct: 935  AVKIAARVRLRPILMTTAAMVTGLLPLLGAMGAGALSRFSIGIVIVAGLTIGTFFTLFVL 994

Query: 817  APILLFIYDWRAK 829
              I  ++      
Sbjct: 995  PVIYTYVGKTHKP 1007


>gi|167752176|ref|ZP_02424303.1| hypothetical protein ALIPUT_00418 [Alistipes putredinis DSM 17216]
 gi|167660417|gb|EDS04547.1| hypothetical protein ALIPUT_00418 [Alistipes putredinis DSM 17216]
          Length = 1063

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 76/699 (10%), Positives = 179/699 (25%), Gaps = 59/699 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G++           ++++P   P   +             +    
Sbjct: 9   RPVLAAVISIVIVLGGIIGVA-----TLPVEQYPDIAPPTVM-------------VRASY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      L   +        I   +       IT+ F      +  A  V  
Sbjct: 51  PGASAETIQKSVIIPLEEAINGVENMMYIKSEASNAGSGSITVYFKQGTDADMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   + +               S  +      QI   
Sbjct: 111 KVATATGSLPAEVTKIGVTTMKRQSSMLEVFTLCSPDSSYDESFLSNYMNINIKPQILRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   + +        +     P  + Q     + ++      N       FG        
Sbjct: 171 QGVGEFVVLGS-DYSMRIWMKPDVMAQYKLIPSDVTAVLAEQNIESAAGTFGENSDNTFQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                        +    +       +        +I       
Sbjct: 230 ----------------YTMKYRGRKMTPEEFGEIVIRATSDGQVLRLKDVADIELGQESY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               ++       A+    A  +   T+E    L A +                      
Sbjct: 274 AYHGLVNGYPGVSALVFQTAGTNATQTVEEIDALLAEVSKDLPKGIEIRPLMSVNDYLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +  L+   SI ++++ T A LS  G ++ L ++
Sbjct: 334 SIHEVIKTLIEAIILVVLVVYVFLQDIRSTLIPTISILVSLVGTFAFLSFAGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG  VD  I+V E ++        S + +         S I  S +  +   + 
Sbjct: 394 FALVLAIGTVVDDAIIVVEAVQARFDSGYKSSYLATVDAMGGITSAIITSTLVFMAVFIP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519
           +   GG +      F ITM +++ IS   A+++  A+   +                 + 
Sbjct: 454 VSMMGGTSGTFYTQFGITMAVAVGISALNALTLSPALCALLLKPYVDEDGNVKNNFAARF 513

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            K+ +    +        + +           + +      + +  T       + +G I
Sbjct: 514 RKAYNTAFSAVLKKYQRGVMLFIKHKWLTWATLGLAMVGLVLLMNSTKTGLVPDEDQGTI 573

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V       L+     +  +             +            +     ++++  
Sbjct: 574 MINVTTAPGSSLAETNKIMGEIGERLKGIPQIRDFQQVAGYGMIAGQGNSYGMCIVKLKD 633

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                    +       +  + +  +    I  V    I
Sbjct: 634 WSERPDKADAVNAVIGQIYARTAD-IKDAQIFAVAPPMI 671



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 57/140 (40%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++++ +  T  F +  G   NL  + A++  IG  V+D ++V + ++   
Sbjct: 359 DIRSTLIPTISILVSLVGTFAFLSFAGFSINLLTLFALVLAIGTVVDDAIIVVEAVQARF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                S         ++       + +++      +P+++ GG+       F I MA  +
Sbjct: 419 DSGYKSSYL--ATVDAMGGITSAIITSTLVFMAVFIPVSMMGGTSGTFYTQFGITMAVAV 476

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A +++ ++  +   +  
Sbjct: 477 GISALNALTLSPALCALLLK 496



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/152 (11%), Positives = 50/152 (32%), Gaps = 6/152 (3%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   +      I  +   +  +     L G E N+     ++ +IG      +++ +  
Sbjct: 890  ALYESFLIPFAVILAVPCGLLGSFILVKLIGQENNIYLQTGLIMIIGLLSKTAILITE-- 947

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
                    + +S       +    L   + T +     ++P+ +    G +   +    +
Sbjct: 948  -YAADRRKSGMSLSQAAFSAAKARLRPILMTVLTCVFGMIPLVIATGVGANGNSTLGSGV 1006

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              G++V   + +F+   + +     + K   I
Sbjct: 1007 VGGMIVGTLALLFLVPSLFIVFQHLQEKVKPI 1038


>gi|153003892|ref|YP_001378217.1| acriflavin resistance protein [Anaeromyxobacter sp. Fw109-5]
 gi|152027465|gb|ABS25233.1| acriflavin resistance protein [Anaeromyxobacter sp. Fw109-5]
          Length = 1037

 Score =  153 bits (386), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 81/618 (13%), Positives = 175/618 (28%), Gaps = 40/618 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL       +      ++P +     I                 
Sbjct: 9   RRPVIAIVVSLVIVIAGL-----QAMRSLNARQYPRSENAQII---------VTTSYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    + + S            +Q  + I      +        +++  +  
Sbjct: 55  NAELVRGFITTPLERVISSADGVDYIESESKQNLSTIRARLRLNHDATRALSEISAKVDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  +L   +          +    ++    E +  ++R    ++   E   
Sbjct: 115 VRGDLPPEAEVPVLTVESADSEFASAYLSFSSDILKQ-NEITDYLVRVIQPRLSAIEGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  + A++       N                 G   
Sbjct: 174 RADILGARTFAMRIWLKPDRMASLNVSPAQVREALARNNYQAA------------VGQTK 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++      +   F+         +   E            ++           
Sbjct: 222 GSLVQVNLTTNTDLRSVREFEQ--------LPVREQDGAIVRLGDVASVVLGAEDYDAAV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             T               +    IE        L+          V          + + 
Sbjct: 274 NFTGQTAVFIGVWALPNANSLDVIERVRAEMDSLQKEIPSQIQGRVAFDATSYVRDAITE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A    +V+IV+F+ +   +  LV   +I +++I  + L+   G T+ L ++  IV
Sbjct: 334 VERTLAETLLIVVIVIFLFLGSLRSVLVPVVAIPVSLIGAVFLMQAFGFTVNLLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +    R+      +   G       I    IT       + F G
Sbjct: 394 LSVGLVVDDAIVVVENVERHLREGMKPVDAAIRGARELVGPIIAMTITLAAVYTPIAFQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA+T+  ++ IS   A+++   M  F++R  + +             L   
Sbjct: 454 GLTGALFREFALTLSGAVAISGVVALTLSPVMSAFLLRQGREERGLAGRINRGFDRLRAT 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                 +  R  G   +   ++ ++ LL    +   +                  S +  
Sbjct: 514 YSRHLDVGLRSRGAIYAAWIAVSALTLLMFTQVPKELAPTEDQGYVFGVVNTPANSTLDQ 573

Query: 597 NLESLQIGDISFQNFDGE 614
              S +  + +       
Sbjct: 574 ITPSTREVNRTVMAMPES 591



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 78/203 (38%), Gaps = 10/203 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             ++ ++K+I   +      +          E+ R     ++I  I + +++        
Sbjct: 302 AEMDSLQKEIPSQIQGRVAFDATSYVRDAITEVERTLAETLLIVVIVIFLFLG---SLRS 358

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  +  + + +   +     FG   NL  + A++  +G  V+D +VV + +    +   
Sbjct: 359 VLVPVVAIPVSLIGAVFLMQAFGFTVNLLTLLAIVLSVGLVVDDAIVVVENV---ERHLR 415

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             +   D   +   E +G  +  ++       P+A  G   G++   FA+ ++  + ++ 
Sbjct: 416 EGMKPVDAAIRGARELVGPIIAMTITLAAVYTPIAFQGGLTGALFREFALTLSGAVAISG 475

Query: 810 SSSIFIAAPILLFIYDWRAKNAR 832
             ++   +P++      + +  R
Sbjct: 476 VVAL-TLSPVMSAFLLRQGREER 497



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/179 (12%), Positives = 62/179 (34%), Gaps = 21/179 (11%)

Query: 672  GVIISAIAMLIYIWIRF-KWYFALGAI-----TTLILDITKTLGFFALFGIEF------- 718
              +++ + + + +  +F  +      +       +   +           + F       
Sbjct: 847  AFLLAVVLIFLVLAAQFNSFRDPFVILAGSVPLGMFGAVVMMFLKMPNPNLPFFTDGWTT 906

Query: 719  --NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              N+ +   ++TLIG    + +++ +      KL     +  D + ++    L   + TS
Sbjct: 907  TLNVYSQVGLVTLIGLVSKNGILIVEFAN---KLQEQGHTKLDAVREAAATRLRPILMTS 963

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +A  +   P+ +    G     S  + +  G+ +  + ++F    I L I      + +
Sbjct: 964  VATVLGHFPLTLVSGPGAEARNSIGLVLVAGMTIGTAFTLFFVPAIYLLIARDHRADQK 1022


>gi|259908035|ref|YP_002648391.1| multidrug efflux system subunit MdtB [Erwinia pyrifoliae Ep1/96]
 gi|224963657|emb|CAX55154.1| Multidrug resistance protein MdtB [Erwinia pyrifoliae Ep1/96]
 gi|283477932|emb|CAY73848.1| Cation/multidrug efflux pump mdtC [Erwinia pyrifoliae DSM 12163]
          Length = 1039

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/621 (11%), Positives = 167/621 (26%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G++           +   P                    +     
Sbjct: 19  RPVATTLLMIAMLLAGIM-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + + L F  S   +    +V   +   
Sbjct: 65  PDVVTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVNLQFQLSLALDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        + +  +  +   ++        
Sbjct: 125 TNLLPGDLPNLPVYSKVNPADPPMMT-LAVTTTSMPMTQVADMVETRVAQKLSQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   L  L  T+  +                G   +  + G+   
Sbjct: 184 VTLSGGQRPAVRVKLNAQALAALGITSETVRSAI------------GSANVNSAKGSLDG 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            E  + +S          +          +                 + +       G  
Sbjct: 232 PERSITLSANDQIKTAEGYRQ--------LIISYQNGSPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    L   L A         +          S    
Sbjct: 284 ANRQPAIVLNVQRQPGANIIATADNIRRLLPSLTASLPKSVEVKLLSDRSTHIRASVRDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      L+   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLALALVVMIIYLFLRNAAATLIPAVAVPLSLIGTFAAMYFLGFSVNNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVVENISRHREKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS F ++++   M   ++    ++  +    +   L    IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAFVSLTLTPMMCARMLNTGSVRQQNRFARASEALFDRVIA 523

Query: 540 IQ-------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                                   +I  +  +      + +   G IQ  V A + V  +
Sbjct: 524 RYGRLLQRVLNHPWLTLGVALATLAITVLLWVTIPKGFFPLQDNGIIQGTVQAPQSVSYA 583

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    +++    +       
Sbjct: 584 NMAQRQQAVASVIMKDPAVQS 604



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 54/141 (38%), Gaps = 7/141 (4%)

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           M+IY+++R      L     + L +  T       G   N   + A+    G+ V+D +V
Sbjct: 356 MIIYLFLR-NAAATLIPAVAVPLSLIGTFAAMYFLGFSVNNLTLMALTIATGFVVDDAIV 414

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGS 796
           V + +    +             K   E     +  + +    ++P+   G   G +   
Sbjct: 415 VVENI---SRHREKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFRE 471

Query: 797 FAIPMAFGIVVAASSSIFIAA 817
           FA+ +A  I+++A  S+ +  
Sbjct: 472 FAVTLAVAILISAFVSLTLTP 492



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 89/247 (36%), Gaps = 6/247 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V        SV  S + S++    +      ++       +   D+ +  + ++ +   
Sbjct: 779  SVRLKSSDGGSVPFSAIASVEQRYGALSINHLDQFPSTTFSFNVSDNASLEQAVDAISLA 838

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
              ++   + I           +  +   +  ++ + +AM I + + ++     +  ++TL
Sbjct: 839  QQDLAMPADIITRFQGSTLAFKTALSNTVWLIVAAIVAMYIVLGVLYESLIHPVTILSTL 898

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   L    + G E ++ AV  ++ LIG    + +++ D            ++  + 
Sbjct: 899  PTAGAGALLALMIAGSELDVIAVIGIILLIGIVKKNAIMMID--FALAAERDHGMTPYEA 956

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++        + T++AA    LP+ +    G  +       M  G+VV+   ++F   
Sbjct: 957  IYQACLLRFRPILMTTLAALFGALPLMLSHGVGAELRRPLGTAMVGGLVVSQVLTLFTTP 1016

Query: 818  PILLFIY 824
             I L   
Sbjct: 1017 VIYLLFD 1023


>gi|224371075|ref|YP_002605239.1| AcrB [Desulfobacterium autotrophicum HRM2]
 gi|223693792|gb|ACN17075.1| AcrB [Desulfobacterium autotrophicum HRM2]
          Length = 1062

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/695 (9%), Positives = 171/695 (24%), Gaps = 57/695 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L        +  + ++P+  P                  +   
Sbjct: 9   RPVFAWVIAIIIMTAGGLAI-----YKMPISQYPAIAPPAIAI-------------DAFY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S      ++ ++FA     +    KV  
Sbjct: 51  PGASGETVENTVTQIIEQKMTGLDDMLYLSGTSSSSGAARVEMTFAPGTDPDVAWSKVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ   + L    +++ +  +      +++     +       +            +   
Sbjct: 111 KLQLAMASLPDVVQRSGVKVSKSTRNYLIIVGLISEDNSMDGNDLRDYAQSNLEKILTRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    +P  L     T   +       N        G     D  
Sbjct: 171 PGVGEVENFGSQ-YAMRIWVNPDSLTSYNLTMEDVILALSAYNVEVSAGQLGGAPAVDGQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +                +      +                              
Sbjct: 230 RMNAAI-------------IVQHLLQTPDEFAAIPIRTNEDGSVVRVRDIGRTELGTERS 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +   T          +     P    I         + 
Sbjct: 277 DIVANYNGKASAGMAIRQAAGANALDTANAVKQKLKEMSQFFPPGMKVIYPYDTTPFTVV 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV +++++ +   +  L+   ++ + ++ T A L   G ++ + ++
Sbjct: 337 AIDEVVKTLFEAVFLVFVIMYLFMGNIRATLIPTIAVPVVLLGTFATLGFFGFSINMLTM 396

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYST-IFDSNITALIATV 475
             +VL IGL VD  I+V E +      +  S   +         S  I    + + +   
Sbjct: 397 FAMVLAIGLLVDDAIVVVENVERIMAEEGLSPRDATAKSMDEITSALIGIGLVLSAVFAP 456

Query: 476 VLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMM----------------IFIIRY 517
           + FF G      R F++T+  S+L+S+  A+ +   +                       
Sbjct: 457 MAFFEGSTGVLYRQFSVTIIASMLLSVLVALILTPVLCVSFLKPIPMGHEPSDNAVFFLR 516

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
              +  D   +    L    ++  F R   + V   ++ ++               + +G
Sbjct: 517 PFFRWFDRTFVKIRRLYVGLVSRSFTRKVRYLVLYLLIVAVVGFLFQRMPTSYIPDEDQG 576

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + +  +      L      ++ ++   +  +    E    V      G           
Sbjct: 577 IMMVMAMLPSGSTLEQTSRVMDKVRDHLLDNEQEAVESLMSVVGISFGGQGQNMALGFAK 636

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           +K       P   ++           ++    +  
Sbjct: 637 LKDWKLRQRPDLKVKAIAGRAMGEFSKINEGMVFA 671



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 76/203 (37%), Gaps = 8/203 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A  + L+ + +     + +    +T         E+++     V +  + M +++ 
Sbjct: 302 DTANAVKQKLKEMSQFFPPGMKVIYPYDTTPFTVVAIDEVVKTLFEAVFLVFVIMYLFMG 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T      FG   N+  + A++  IG  V+D +VV + + 
Sbjct: 362 ---NIRATLIPTIAVPVVLLGTFATLGFFGFSINMLTMFAMVLAIGLLVDDAIVVVENV- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +S RD   KS++E     +   +       PMA + GS       F++ + 
Sbjct: 418 -ERIMAEEGLSPRDATAKSMDEITSALIGIGLVLSAVFAPMAFFEGSTGVLYRQFSVTII 476

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             ++++   ++ +   + +    
Sbjct: 477 ASMLLSVLVALILTPVLCVSFLK 499



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 82/251 (32%), Gaps = 14/251 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + V  +   +   SL    +   N     N             A   +  +V K    I 
Sbjct: 802  KMVPFTSFATGRWSLGSPKLERYNAFPSINIWGEPAPGYSTGEAMAAMEALVTKLPQGIG 861

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
               T  + +         ++         S   + + +   ++ W      +  L L + 
Sbjct: 862  FDWTGLSYQERMATAQGPILY------AFSIFVIFLCVAALYESWTIPFVNLLMLPLGVF 915

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              +   +L G+  ++      LT +G S  + +++   +++ +       +  D    ++
Sbjct: 916  GAIAATSLRGLPNDVYFQIGFLTTLGLSTKNAILIIQFIKERL---GHGDNLIDATLGAV 972

Query: 766  NETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAASSS-IFIAAPILL 821
                   + TS+A F  VLP+   +  G   + +    +  G++ A     IFI    ++
Sbjct: 973  KTRFRPVMMTSLAFFFGVLPLAIASGAGAGAMNAIGTAVCGGMLSATFIDLIFIPLFFVV 1032

Query: 822  FIYDWRAKNAR 832
                +  K  +
Sbjct: 1033 VAGMFTPKPKK 1043


>gi|75677212|ref|YP_319633.1| acriflavin resistance protein [Nitrobacter winogradskyi Nb-255]
 gi|74422082|gb|ABA06281.1| Acriflavin resistance protein [Nitrobacter winogradskyi Nb-255]
          Length = 1042

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 87/683 (12%), Positives = 192/683 (28%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+   ++  +G +      + +      P                   +     
Sbjct: 11  RNPLPSVLFSIILLILGWVSFTNLAITRLPSADIPVIS--------------VAVSQFGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ FA     +   + V   +  
Sbjct: 57  APAELEAQVTKTIEDGVSGVEGVRHISSSITDGLSLTTIQFALETNTDRALNDVKDAVTR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +  + L+       + IV              + S  +       +       
Sbjct: 117 VRANLPQNVNEPLIQRVDVIGLPIVTYAAISPGKTPE--QLSYFVDDVVKRTLQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL  +  T   +S      N    G    +     +     
Sbjct: 175 QVERIGGVEREILVSLDPDRLHAVGLTAVDVSQRLRGINVDVAGGRAEIGQNDQAIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   E++G  ++                      G           +   +A      
Sbjct: 235 GAKTLNELAGTMISLP--------------------GGSEIRLDDLGTVTDTIADRRTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S     E        L+     + L +++  +V    G+   
Sbjct: 275 RFNGEPVVALGIKRSKGASDVVVAEAVQERINALKEQYPEVDLKLID-TSVEFTKGNYEA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +I++F+ +   +  ++A  S+ L++      + +LG +L L S   I 
Sbjct: 334 AISTLFEGATLAVIIVFLFLRDIRATIIAAISLPLSIFPAFWAMDILGFSLNLVSFLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A   I  + I        + 
Sbjct: 394 LSTGILVDDAIVEIENIVRHMRMGKSPYRAALEAADEIGLAVIAISLTIIAIFAPASFMS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ + +  S+  A  +   +  + ++    ++     + R +      
Sbjct: 454 GIAGQFFKQFGITVSVQVFFSLLAARLVTPVLAAYFMKDHPHEAPPPGRVLRAYTRLVTW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           +++               SI SI LL    L      +  + + +     +  +   +  
Sbjct: 514 SVRHYIITVLIGFAVFAASIWSIKLLPQGFLPAQDTARSLLAIELPPGSQLAHTEKVTEG 573

Query: 599 ESLQIGDISFQN--FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            + ++         F         LQ     S+      +  +      + L   Q+ E 
Sbjct: 574 IAARLRKRPEVTSVFVDGGRVPPGLQEVRRASLIINYTPKQDRGITQRELELQIGQDLES 633

Query: 657 VGPKISRELIRKGIVGVIISAIA 679
           V       L   G+  V +    
Sbjct: 634 VPDVRYWFLDENGLRAVALVVTG 656



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 73/249 (29%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +     + L  + +  +++       +        L   + +    V     ++   
Sbjct: 246 MISLPGGSEIRLDDLGTVTDTIADRRTFARFNGEPVVALGIKRSKGASDVVVAEAVQERI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             + E  P   ++  +                    + +A++I           + A  +
Sbjct: 306 NALKEQYPEVDLKLIDTSVEFTKGNYEAAISTLFEGATLAVIIVFLFLRDIRATIIAAIS 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I        + G   NL +  A+    G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSIFPAFWAMDILGFSLNLVSFLAITLSTGILVDDAIVEIENI---VRHMRMGKSPYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     +  S+           + G  G     F I ++  +  +  ++  + 
Sbjct: 423 AALEAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARLVT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PVLAAYFMK 491



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 73/216 (33%), Gaps = 7/216 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++     +      + A     +M+            ++       +   EL       +
Sbjct: 790  DRERQATVAADLVGTAALGDATDMINDLPVMKSLPKGVRVNPSGDAESLNELSEGFATAI 849

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   +  + +L L I   +    L G +        +L L+G 
Sbjct: 850  TAGLMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIMALLLTGKQLTTPVWIGILMLMGI 909

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ +   ++++         + +  +  +     V T++A    ++P A+    
Sbjct: 910  VTKNAIMLVEFAIESIREGRAR---EEAMIDAGMKRARPIVMTTVAMVAGMMPSALAFGA 966

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            GG      A+ +  G++ +   S+     + L + D
Sbjct: 967  GGEFRSPMALAVIGGLLFSTILSLVFVPAMFLLMDD 1002


>gi|119386596|ref|YP_917651.1| acriflavin resistance protein [Paracoccus denitrificans PD1222]
 gi|119377191|gb|ABL71955.1| acriflavin resistance protein [Paracoccus denitrificans PD1222]
          Length = 1018

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/676 (12%), Positives = 197/676 (29%), Gaps = 52/676 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R+    + ++ ++  +G          +  +   P+           DL   S +V +  
Sbjct: 9   RHPVPPIAIFLVLMLMGFYS-----FSRLAVTAMPNI----------DLPLVSVVVSQPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    ++  + +        S      +I + F      +   + V   + 
Sbjct: 54  AAPSELTRQVIQPIEDSIASITGVRHITSSATDSSARIYVEFELETDTDRAVNDVKDAVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V + L     + L+       ++I+    +           S  +       +      
Sbjct: 114 NVRADLPESIVEPLIHRIDISGMAILTYAVS--NPGMSIEGLSDFVDDVVSRDLSTVSGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+  E DP R+     T A++S      N    G    +     S    
Sbjct: 172 ASITRIGGADRQINVELDPDRIMAFGLTAAEISDQLRAKNIDMGGGRGDLAGTEYSIRAL 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
               D   +    +                       G R        ++    +     
Sbjct: 232 GSAGDVARLGATPILI--------------------GGGRTVRLDQLGSVTDGASEERKF 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L    +        +  S     + A    A + A +   ++ +++        GS  
Sbjct: 272 ALLDGQPVVAFGVFRASGESDLEAGDGAKARIAEIEARNPGTRITLID-DATTYTSGSYH 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A L ++V+F+ +   +  L+A  ++ L++I T  ++  LG TL   S+  I
Sbjct: 331 STMETLYEGAALAVVVVFLFLRNWRATLIAAVALPLSIIPTFFVMHWLGFTLNGISLLAI 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L  G+ VD  I+  E I          + +     +    T+   + + +     + F 
Sbjct: 391 TLVTGILVDDAIVEIENIVRHINMGVPAYEASMEAANEIGLTVIAISFSIVAVFAPVSFM 450

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      + F +T+ +S+L S+  A  I   +  + +  +    +              
Sbjct: 451 GGIPGQYFKQFGLTVAVSVLFSLLVARLITPMLAAYFL--RDNTRLPEERDGPVLRNLMA 508

Query: 538 IAIQFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSV--- 593
           +    +R R   + + +     SI                G  Q+ +       +S    
Sbjct: 509 VLAWTLRHRGLTLLMGLGVFAGSIYSATLLPTEFIPASDVGRSQISIELPPGATVSETEA 568

Query: 594 ----VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               +   ++++      F N   +     +L    G    + R   +++ ++   +   
Sbjct: 569 AARMISQRIKAVPEVRSVFVNGGEDDVTKAKLMVNYGPKEERERSSFVIEDELKRDLSQI 628

Query: 650 TIQNTEIVGPKISREL 665
                     + + +L
Sbjct: 629 PDMRINFQNEEGNADL 644



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 7/159 (4%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             +   +++++++R  W   L A   L L I  T       G   N  ++ A+  + G  
Sbjct: 339 GAALAVVVVFLFLR-NWRATLIAAVALPLSIIPTFFVMHWLGFTLNGISLLAITLVTGIL 397

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+D +V  + +   ++     +   +   ++ NE     +  S +      P++  GG  
Sbjct: 398 VDDAIVEIENI---VRHINMGVPAYEASMEAANEIGLTVIAISFSIVAVFAPVSFMGGIP 454

Query: 794 ---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                 F + +A  ++ +   +  I   +  +      +
Sbjct: 455 GQYFKQFGLTVAVSVLFSLLVARLITPMLAAYFLRDNTR 493



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 46/119 (38%), Gaps = 4/119 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +  + +L L I   +    L G   ++  V   L L+G    + +++ +     + 
Sbjct: 859 FVTPVSILMSLPLAIGGAILALFLTGNSISMAVVIGFLMLMGIVTKNAIMLVEFA---VS 915

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                   R  I  ++++     V T++A    ++P A  G      F+ PMA  ++  
Sbjct: 916 SMDQGTEKRAAILDAVHKRARPIVMTTIAMTAGMVPSA-LGTGEGAEFSSPMAIAVIGG 973


>gi|256017752|ref|ZP_05431617.1| multidrug efflux system subunit MdtC [Shigella sp. D9]
 gi|332278770|ref|ZP_08391183.1| multidrug resistance protein mdtC [Shigella sp. D9]
 gi|332101122|gb|EGJ04468.1| multidrug resistance protein mdtC [Shigella sp. D9]
          Length = 1025

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKATPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGLSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I+IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIVISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 73/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G+  N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGLSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  IV++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIVISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|227822617|ref|YP_002826589.1| AcrB/AcrD/AcrF family protein [Sinorhizobium fredii NGR234]
 gi|227341618|gb|ACP25836.1| AcrB/AcrD/AcrF family protein [Sinorhizobium fredii NGR234]
          Length = 1046

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/681 (11%), Positives = 190/681 (27%), Gaps = 45/681 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I   GL       + +      P                      E  
Sbjct: 28  RRPIFALVVNMLIVVAGLAAWNGIEIRELPQVDQPVISVTTE--------------FEGA 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   S ++       S    ++++TL F+D+      A+ +   L  
Sbjct: 74  SPETIDREVTSIIEGAVSRVQGIKGISSSSSFGRSRVTLEFSDTTDIGQAANDIRDALGR 133

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+ +L  D ++  +V        I+      D +     + ++ +  +  D++   E   
Sbjct: 134 VSGRLPDDAEEPRIVKADSDSQPIMRLALTSDTMSME--DMTLLVENEISDRLAAVEGVA 191

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + + ++L     T A +       +               S     
Sbjct: 192 DVTVYGDQEKIFRIDLNQAKLAGRGVTVANLREALANASYDVPAGSLTSASQDISVRATA 251

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +   + L                                   +           
Sbjct: 252 DLQTPEQFENLIL------------------------GNNVRLRDVATVTLGPDTGSSAL 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS-LPIKLNIVEERNVGADLGSDS 360
                         +AQ +     E    +   + A          +   +     G+  
Sbjct: 288 RSNGRQGIGLGIIRQAQSNTVDISEGVRKVVDTISADILPKGTELKITSDDAVFINGAIH 347

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   +V +V+++ +L  +  L+   S+ + +I T+A + L G ++ + ++  I
Sbjct: 348 EVEIALGVAVFIVTLVIYLFLLDWRATLIPTISMPIALIGTVAAIYLAGFSINILTLLAI 407

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  GL VD  I+V E I     +      +   G    +  +  +  T     V L F 
Sbjct: 408 VLATGLVVDDAIVVLENIVRRRAEGLGPRAAAVHGTLEVFFAVLATTATLAAVFVPLSFL 467

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
            G      R F   +  SIL+S F ++++   +    +      +   +    +      
Sbjct: 468 PGQTGGLFREFGFVLAFSILLSSFVSLTLCPMLASRMLTSEAHAQHGPMARFGQRAAGFY 527

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            + ++        V     F   +    F    +     +   Q+ +  N P  +S+  +
Sbjct: 528 RVTLRACLNAPLVVFTVAAFFTIAGAAGFMTLKSELTPNEDRSQVMLRINAPQGVSLEYT 587

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +  +I D         +   V      G S     ++  +            I     
Sbjct: 588 QAQMRRIEDGLQPLVKSGEITNVFSISGQGGSANSGFMVLTLAPWEQRDRTQQQIVADIN 647

Query: 657 VGPKISRELIRKGIVGVIISA 677
                   +    I    +  
Sbjct: 648 KVTGKVASVRASTIQANSLGI 668



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 11/238 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +   +R         D             + L            + E V+K +  I    
Sbjct: 266 NNVRLRDVATVTLGPDTGSSALRSNGRQGIGLGIIRQAQSNTVDISEGVRKVVDTISADI 325

Query: 650 TIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYI-WIRFKWYFALGAITTLILDI 704
             + TE+         I   I    + + ++   + + I      W   L    ++ + +
Sbjct: 326 LPKGTELKITSDDAVFINGAIHEVEIALGVAVFIVTLVIYLFLLDWRATLIPTISMPIAL 385

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T+    L G   N+  + A++   G  V+D +VV + +   ++     +  R      
Sbjct: 386 IGTVAAIYLAGFSINILTLLAIVLATGLVVDDAIVVLENI---VRRRAEGLGPRAAAVHG 442

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             E     + T+       +P++   G        F   +AF I++++  S+ +   +
Sbjct: 443 TLEVFFAVLATTATLAAVFVPLSFLPGQTGGLFREFGFVLAFSILLSSFVSLTLCPML 500



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             +    + + + + +  +F+ +   +  ++T+ L +   +    + G   N+ +   ++ 
Sbjct: 866  FITFGFAIVIIFLVLAAQFESFVSGIIIMSTVPLGLACAVFAMIMTGNTLNIYSQIGLVM 925

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G    + +++ +      +L       R  I+ + N  L   + T +A  +  +P+ +
Sbjct: 926  LVGIMAKNGILIVEFAN---QLRDRGQDVRSAIENAANIRLRPVMMTMIATIVGAVPLVL 982

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                G     +    +  G+ +A   ++++     L I  +   +A
Sbjct: 983  ASGAGAEARIALGWVLVGGLGLAVIVTLYLTPVAYLVIARFTKPHA 1028


>gi|284052556|ref|ZP_06382766.1| preprotein translocase subunit SecD [Arthrospira platensis str.
           Paraca]
          Length = 463

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 125/490 (25%), Positives = 208/490 (42%), Gaps = 64/490 (13%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVD----EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
            + +  I LGLDLRGGS L +++             L+     + + +   G+    ++ 
Sbjct: 21  ILVRVPIRLGLDLRGGSQLTIQLQTSDEVPRIDERVLEGVQSVIENRVNGLGVSEAVVQT 80

Query: 94  -IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
              ++I +        E     +    Q    +     +  L                 I
Sbjct: 81  VGDDQILVQLPGVSDPEQAERVLGGTAQLDFREQRPGTEGELFAEIQVNRALDAELSQAI 140

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
                  +E+ ++ + +    I                         S  ++ +    ++
Sbjct: 141 ATGDDARLEELLQQLNESNQAI------------------------ASLYQEPIIRGQQL 176

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
                 P     G+   +RF  +   N   +   +  +G  +                  
Sbjct: 177 QDAFPQPTQGGNGWEIVLRFNNEGGRNFAELTKNLAGTGRTIGIFL-------------- 222

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                                   +L    ++    +  I  G A I+GNFT   A  LA
Sbjct: 223 ---------------------DDSLLSSPTVSVEFADTGITGGSAVITGNFTAAEANDLA 261

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
             LR G+LP+ + IVE R VGA LG DSI +   A   GL+L+++FM+  Y   G +AD 
Sbjct: 262 VQLRGGALPVPVEIVENRTVGATLGRDSIQRSIYAGSGGLILVLIFMVAYYRLPGAIADV 321

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++ +  + TLA+ +LLG TLTLP IAG +L IG+AVD+N+L+ ER REE R  ++++ S+
Sbjct: 322 ALVVYALFTLAIFALLGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAGKTLYRSV 381

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           + GF RA+ +I D N+T  IA V LF+ G G V+GFA+T+GL + +SMFTA++  R +M 
Sbjct: 382 ESGFYRAFGSILDGNVTTGIACVALFWLGTGLVKGFALTLGLGVAVSMFTAVTFSRTLMF 441

Query: 513 FIIRYKKMKS 522
            +I   + + 
Sbjct: 442 TVISLPEFRK 451



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 91/226 (40%), Gaps = 4/226 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   +   +      +           G+  A       V+ +   +     I     V
Sbjct: 222 LDDSLLSSPTVSVEFADTGITGGSAVITGNFTAAEANDLAVQLRGGALPVPVEIVENRTV 281

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ I++ I       I +LI++   ++   A+ A   L++    TL  FAL G+ 
Sbjct: 282 GATLGRDSIQRSIYAGSGGLILVLIFMVAYYRLPGAI-ADVALVVYALFTLAIFALLGVT 340

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      +    ++       G  +  ++
Sbjct: 341 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKTLYRSVESGFYRAFGSILDGNV 397

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              I+ + +   G  ++  FA+ +  G+ V+  +++  +  ++  +
Sbjct: 398 TTGIACVALFWLGTGLVKGFALTLGLGVAVSMFTAVTFSRTLMFTV 443


>gi|237747990|ref|ZP_04578470.1| drug efflux pump transmembrane protein [Oxalobacter formigenes
           OXCC13]
 gi|229379352|gb|EEO29443.1| drug efflux pump transmembrane protein [Oxalobacter formigenes
           OXCC13]
          Length = 1031

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/608 (10%), Positives = 162/608 (26%), Gaps = 45/608 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I   G +           +   P                  +  L   
Sbjct: 9   RRPVATVLLTIAILLAGAVA-----FKYLPVSPLPQVDFPTIQ---------VNASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +       I L F   R  +  A  V   +  
Sbjct: 55  SPETMAATVATPLERSLGRIAGITEITSTSTLGSTSIALQFDLDRDIDGAARDVQSAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L      N          + ++   ++        +           ++   E   
Sbjct: 115 ARALLPTGMPSNPTYRKVNPADAPIMI-LSMTSDSLTRGQMYDAADTIVGQKLMQLEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +  E  P +L     +   +                             
Sbjct: 174 NVIVGGGSQPAVRVELHPQQLSNYGISLEDVRNVITS--------------------TNV 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +  H     AN   +       +       +        ++   +  + +  
Sbjct: 214 NRPKGFLQNDEHAWKVEANDQARKAADYQPLIVSYKNGKAVRLSDIADVNDSVRDLRNAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++        I   +   +   T+     +   LRA         +          S   
Sbjct: 274 MVGDQPCVMLIIFREPGANIIETVGRINEIMPQLRASIPEAINLNLVMDRTPTIRSSLRE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +  G+   ++  S+ ++++ T  ++ L   +L   S+  + 
Sbjct: 334 VETTLVISIALVILVVFLFLRNGRATAISAISVPVSLVGTFTVMYLADFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I            +   G      T+   +I+ +   + +   G
Sbjct: 394 IATGFVVDDTIVVLENIMRHIEGGMKPIDAALKGAREVGFTVMSISISLIAVFIPILLMG 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP--- 535
           G      R FAIT+  +IL+S+  +++    +    ++ K  +       +   L     
Sbjct: 454 GIIGRLFREFAITLSATILVSLVISLTTTPMLCALWLKSKDKRKPGRLYNASEHLFTSLQ 513

Query: 536 ----DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +       R   + +    +      +      +     G +   + A++ +  
Sbjct: 514 MAYGRTLKWAIDHRRTMMLILIATVAFNVFLYIVVPKGFFPQQDTGRLMGMIRADQSISF 573

Query: 592 SVVRSNLE 599
             ++  ++
Sbjct: 574 QAMQKKMQ 581



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 94/255 (36%), Gaps = 7/255 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +     + V LS +    +S++    +    D     L+  +    + +     +  +  
Sbjct: 246 VSYKNGKAVRLSDIADVNDSVRDLRNAGMVGDQPCVMLIIFREPGANIIETVGRINEIMP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
           ++   +P +   N  +      R  +R+    ++IS   +++ +++  +       +  +
Sbjct: 306 QLRASIPEAINLNLVMDRTPTIRSSLREVETTLVISIALVILVVFLFLRNGRATAISAIS 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L     N  ++ A+    G+ V+D +VV + +   M+     +   D
Sbjct: 366 VPVSLVGTFTVMYLADFSLNNLSLMALTIATGFVVDDTIVVLENI---MRHIEGGMKPID 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              K   E     +  S++     +P+ + GG +      FAI ++  I+V+   S+   
Sbjct: 423 AALKGAREVGFTVMSISISLIAVFIPILLMGGIIGRLFREFAITLSATILVSLVISLTTT 482

Query: 817 APILLFIYDWRAKNA 831
             +       + K  
Sbjct: 483 PMLCALWLKSKDKRK 497



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 94/234 (40%), Gaps = 6/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +   +  + S       +     L +      + +     +++ +++I   ++I  + 
Sbjct: 780  SAIARWEPVNESLSVNHQGQFASTTLSFNLPPGNSLSDATMAIEQTLSDIGLPTSIVGSF 839

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                K  ++ +      ++ + IA+ I + I ++ +   +  ++TL       L    L 
Sbjct: 840  QGTAKTFQDSMSSQPWLILFALIAVYIVLGILYESFIHPITILSTLPSAGVGALLALILA 899

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G EF++ A+  VL LIG    + +++ D     +      +S  + I ++        + 
Sbjct: 900  GSEFSVIALIGVLLLIGIVKKNAIMMID--FALVAEREEGLSPENAIFQACLLRFRPIMM 957

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ AA    LP+A+    G  +     I +  G++++   +++    + L++  
Sbjct: 958  TTTAALFGALPLALGRGDGAEMRIPLGISIVGGLILSQLLTLYTTPIVYLYLDK 1011


>gi|320663315|gb|EFX30620.1| multidrug efflux system subunit MdtC [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 1025

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 166/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRAAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++      ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMTCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T+    ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQPGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 69/216 (31%), Gaps = 6/216 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FA+ ++  I ++   S+ +      ++       
Sbjct: 461 REFAVTLSVAIGISLLVSLTLTPMTCGWMLKASKPR 496


>gi|296393863|ref|YP_003658747.1| protein-export membrane protein SecD [Segniliparus rotundus DSM
           44985]
 gi|296181010|gb|ADG97916.1| protein-export membrane protein SecD [Segniliparus rotundus DSM
           44985]
          Length = 555

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 114/550 (20%), Positives = 197/550 (35%), Gaps = 38/550 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR  P   +L  ++   G    +     +  +             LG+DL+ G+ + L  
Sbjct: 8   MR--PLQYLLVFVVFVAGSYSLVFFTGDKKKIP-----------HLGIDLQSGTRVTLTA 54

Query: 61  ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD--SRFKENIADKV 115
              D  D     L +  + +   +   G+    +    N + ++           +    
Sbjct: 55  RTPDGKDPDQSSLNLAKEIIEKRVNGLGVSGSEVVVQGNNLVITVPGEEGSQARTLGQTA 114

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI- 174
            L+++ V                +                       +   +        
Sbjct: 115 RLYIRPVAKNAVNGQATVWDKQNSPNMFEPPPPAPAPAAGPDGQPAPADPNVSAAQAAEI 174

Query: 175 -------GISESTIQRLGSHRILIQLPGEQDPSRLRQL-------LGTTAKMSFHKVLPN 220
                     +  +         I+     DP    ++       L    K         
Sbjct: 175 QQARAIRQSPDVIVNISPEEIQNIRAMAVTDPEAAAKIVEQKFGPLDKAVKSLDCGKPDP 234

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                           DG +  V +   I G  ++ A A  D +    VV++SF   G  
Sbjct: 235 LRGNDDPKLPLVTCSQDGTEKFVLEPAIIDGQEISQAGAQMDNQAGAWVVNVSFKPHGQE 294

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
            + + T D++G   A+ LD  V++ PVI     +G  QISGNFT  +A  LA +L+ GSL
Sbjct: 295 IWSKYTADHVGTQTAITLDSVVVSHPVIQGV-INGSTQISGNFTATSAKELANVLQYGSL 353

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG----KWGLVADFSIFL 396
           P+  +  E + + A LG  S+  G  A   GLVL++L+ +  Y        L    S   
Sbjct: 354 PLSFSSSEAQTISATLGLASLRAGLIAGAVGLVLVLLYSLFYYRALGFLALLSLLLSGVA 413

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           N  + + L   +G TL L  IAG ++GIG+  DS ++  ERI++E ++ +S   ++   +
Sbjct: 414 NYAIVVLLGRWIGFTLDLAGIAGFIIGIGMTADSFVVYFERIKDEVQEGRSFRSAVPRAW 473

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            RA  TI   N    IA  VL+    G VRGFA T+GL+ ++ +     +   ++     
Sbjct: 474 ERARRTILSGNAVTFIAAAVLYILAIGEVRGFAFTLGLTTIMDLVVVFLVTHPLVHAAST 533

Query: 517 YKKMKSIDIN 526
                     
Sbjct: 534 RAWWAKPSRT 543



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 83/271 (30%), Gaps = 15/271 (5%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +N      G           V      +    +    +     +G             
Sbjct: 282 WVVNVSFKPHGQEIWSKYTADHVGTQTAITLDSVVVSHPVIQGVINGSTQISGNFTATSA 341

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             +A       +    +           + +   +    +R G++   +  + +L+Y   
Sbjct: 342 KELANVLQYGSLPLSFSSSEA-------QTISATLGLASLRAGLIAGAVGLVLVLLYSLF 394

Query: 687 RFKWYFALGAITTL---ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
            ++    L  ++ L   + +    +      G   +L  +A  +  IG + +  VV ++R
Sbjct: 395 YYRALGFLALLSLLLSGVANYAIVVLLGRWIGFTLDLAGIAGFIIGIGMTADSFVVYFER 454

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           ++  ++      SFR  + ++        +  +   FI+   + +     +  FA  +  
Sbjct: 455 IKDEVQE---GRSFRSAVPRAWERARRTILSGNAVTFIAAAVLYILAIGEVRGFAFTLGL 511

Query: 804 GIVVAASSSIFIAAPIL--LFIYDWRAKNAR 832
             ++       +  P++       W AK +R
Sbjct: 512 TTIMDLVVVFLVTHPLVHAASTRAWWAKPSR 542


>gi|227887132|ref|ZP_04004937.1| acriflavin resistance protein D [Escherichia coli 83972]
 gi|227835482|gb|EEJ45948.1| acriflavin resistance protein D [Escherichia coli 83972]
 gi|307554149|gb|ADN46924.1| multidrug resistance protein MdtC [Escherichia coli ABU 83972]
          Length = 1025

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAT 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   S+++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSEASAAIDRAMTQLGVPSSVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|154245096|ref|YP_001416054.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
 gi|154159181|gb|ABS66397.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
          Length = 1048

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/603 (11%), Positives = 164/603 (27%), Gaps = 42/603 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ + ++  +G++           + + P+      +           +     
Sbjct: 11  RKPVPSLVFFFILVVLGIV-----HFRGLPVTQMPNIDVPIVM---------VTVTQSGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +        S+ +  +  T+ F      +   +     +  
Sbjct: 57  APSELETQVTKKVENAIAGVAGVKHITSSISEGASITTVEFHLETLVDRAVNDTRDAVTK 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L     +  +     + + IV    +   + +   E S  +       +       
Sbjct: 117 IRQDLPRSIDEPQVQRVDIEGLPIVTYAVSSPDMTTE--ELSWFVDDTIARALQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL  L  T A++S      N    G    V     S     
Sbjct: 175 QVKRQGGVDREIRIALDPDRLMALGITAAEVSRQLRATNLDVSGGRGEVGTQEQSIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++   +  +   F        V     E                         
Sbjct: 235 GATTMEGLAETRIVLSNGRFVRLGDLGQVIDGAAEQ---------------------RVF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A    +A+   + T+             + P       +  V         
Sbjct: 274 ARLDGKSVVAFGVYRAKGFSDVTVYDRVNEDLAKLKAANPGITITEIDTTVRFTKSDYQS 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  L+   +I L+++ T  ++ +LG +L   S+  I 
Sbjct: 334 AMHTLIEGAILAVIVVFLFLRDVRATLITALAIPLSILPTFWVMDMLGFSLNAVSLLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +  + +T       + F G
Sbjct: 394 LVTGILVDDAIVEIENIVRHMRMGKSPYRAAIEAADEIGLAVVATTLTIAAVFAPVSFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +++L S+  A  I   +  + +R    +                +
Sbjct: 454 GIAGQYFKQFGLTVAIAVLFSLAVARLITPLVAAYFLRDTGHRE--TGDGKVMRGYVRLL 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           +               +F                 +      L V       L+  +   
Sbjct: 512 SWSVRHRFATIGMGIAIFIGTIFLSTLLPSGFLPTNDISRALLSVELPPGTTLAETQKVS 571

Query: 599 ESL 601
           + +
Sbjct: 572 DDI 574



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 78/251 (31%), Gaps = 6/251 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             ++ +   R V L  +   ++      +  +            + +    V     +  
Sbjct: 244 ETRIVLSNGRFVRLGDLGQVIDGAAEQRVFARLDGKSVVAFGVYRAKGFSDVTVYDRVNE 303

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K+    P  TI   +        +        +  + +A+++           L   
Sbjct: 304 DLAKLKAANPGITITEIDTTVRFTKSDYQSAMHTLIEGAILAVIVVFLFLRDVRATLITA 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + L I  T     + G   N  ++ A+  + G  V+D +V  + +   ++      S 
Sbjct: 364 LAIPLSILPTFWVMDMLGFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHMRMGKSP 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                ++ +E     V T++       P++  G   G     F + +A  ++ + + +  
Sbjct: 421 YRAAIEAADEIGLAVVATTLTIAAVFAPVSFMGGIAGQYFKQFGLTVAIAVLFSLAVARL 480

Query: 815 IAAPILLFIYD 825
           I   +  +   
Sbjct: 481 ITPLVAAYFLR 491



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 +  + +L L +        + G   ++  +   L L+G    + +++ D   + M
Sbjct: 873  DLLQPITILVSLPLSVGGAFIALLITGNSVSMPVIIGFLMLMGIVTKNAILLVDFAIEAM 932

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                   +    + ++  +     V T++A    ++P A+    GG+     AI +  G+
Sbjct: 933  HQGVERTT---ALIEAGRKRAQPIVMTTIAMVAGMVPSAMALGEGGAFRAPMAIAVIGGL 989

Query: 806  VVAASSSIFIAAPILLFIYD 825
            + +   S+     +   + D
Sbjct: 990  ITSTVLSLVFVPAVFSVMDD 1009


>gi|238799015|ref|ZP_04642476.1| Multidrug resistance protein mdtB [Yersinia mollaretii ATCC 43969]
 gi|238717156|gb|EEQ09011.1| Multidrug resistance protein mdtB [Yersinia mollaretii ATCC 43969]
          Length = 1047

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 146/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPYPPIYSKVNPADPPILT-LAVTSTAIPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEDYRDLIVAYQNGAPIRLQDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           +          S S  
Sbjct: 284 ANTQQAIVLNIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKILTDRTTTIRASVSDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLSIALVVMVIYLFLRNAAATVIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 89/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  + ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSAEDYRDLIVAYQNGAPIRLQDVATIEQGAENNKLAAWANTQQAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   +              +  EL+    
Sbjct: 293 NIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKILTDRTTTIRASVSDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 349 --LSIALVVMVIYLFLR-NAAATVIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/200 (17%), Positives = 75/200 (37%), Gaps = 6/200 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +E V +    I   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 830  EAVEAVTQAEQAIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPVTILSTLPTAGVGALLALMLTGHELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DQGMSPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGAGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRA 828
               ++F    I L       
Sbjct: 1008 QILTLFTTPVIYLLFDKLAR 1027


>gi|149908024|ref|ZP_01896692.1| AcrB/AcrD/AcrF family protein [Moritella sp. PE36]
 gi|149809030|gb|EDM68961.1| AcrB/AcrD/AcrF family protein [Moritella sp. PE36]
          Length = 1055

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/564 (10%), Positives = 158/564 (28%), Gaps = 38/564 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      +  
Sbjct: 9   KRPVVAIVLSLLLCVFGAVS-----FSKLAVREMPDVESPVVT---------VMTRYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT++F            +   +  
Sbjct: 55  AASIMESQITSVIEDQITGISGIDEVRSVTRNGMSRITVTFDLGWNLTEGVSDIRDAVAK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++          V    N    +    + +    R   D+  +     
Sbjct: 115 AQRSLPDEADDPIVSKDNGSGEPSVYINLNST--VMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     TT+ +                          N  
Sbjct: 173 SVDLSGGLYQVMYVKLFPDLMAGRAVTTSDIVDALKTE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  TA    +       +          +      +           
Sbjct: 214 NPGGEVRNDTTVMSVRTARLYAQPQDFEYLVVRTTSDGYPVYLRDVAQVYVGAENESSSF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +              ++A         V+  +      S S 
Sbjct: 274 KSNGIVNLSLGVVTQSDANPLDVASAVRAEVDKMQAFLPEGMSLTVDYDSTVFIDQSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVVLVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEQGEKPLLAAYKGTREVGFAVVATTMVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   +++ ++  S     +   F   +  
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLASKMLKSEQKTSRFSVWMEGLFQRLENG 513

Query: 539 AIQFMRARFWGVGISILFSICSIC 562
               +        ++ +  I  + 
Sbjct: 514 YRGIVTKAIAYRLVAPVVIIACVA 537



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 87/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          +R   +     +    +F       + L            V   V+ 
Sbjct: 243 LVVRTTSDGYPVYLRDVAQVYVGAENESSSFKSNGIVNLSLGVVTQSDANPLDVASAVRA 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++        +  V    +  + +        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKMQAFLPEGMSLTVDYDSTVFIDQSISEVYSTLFITGGLVVLVLYIFI-GQARATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  +      FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIEQGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  K   E     V T+M   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 KPLLAAYKGTREVGFAVVATTMVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K +R
Sbjct: 479 LTLTPVLASKMLKSEQKTSR 498



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 49/140 (35%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   +  + T+ + +        + G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPMVVMFTVPMGVFGGFLGLYVMGGGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    ++    I  +    L   + T+       +P+ +    G     +    + FG+
Sbjct: 931  QLRDRGVAIEQAIIDASARRLRPILMTAFTTLAGAMPLILSTGAGSESRIAVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYD 825
              A   ++F+   +   I  
Sbjct: 991  AFATLVTLFVIPAMYRLISG 1010


>gi|302390683|ref|YP_003826504.1| acriflavin resistance protein [Thermosediminibacter oceani DSM
           16646]
 gi|302201311|gb|ADL08881.1| acriflavin resistance protein [Thermosediminibacter oceani DSM
           16646]
          Length = 1034

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/661 (10%), Positives = 186/661 (28%), Gaps = 52/661 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++   + ++  ++  +G +      L +   D  P       +                 
Sbjct: 9   KHPVTMTMIVVIVLVLGAVS-----LDRLGTDLLPDISFPTLM---------VITEYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +++ + +        +  +  + IT+ F      +     V   +  
Sbjct: 55  GPEEVENLVTKPLEQVLTTVSNVKSIRSTSLEGVSNITVEFNWGTDMDFAVLDVREKIDL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D +   +      +I ++       +      +       +  +++   E   
Sbjct: 115 IKDALPSDVRSPQIYKYDASQIPVMEIAVYGGE---DLSQLKKIAEDKIKNRLLQIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    DP +L +   T   +                             
Sbjct: 172 MVQVFGGTKREIHIIVDPDKLVRYGITMDTVIRTLQAE--------------------NL 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +       G       +  + K    + ++     G       +   I +     +  R
Sbjct: 212 NLPGGAVSYGKREYLIRSISEFKDISEIKELPLAVSGGGSIPLSSVAKIEEVEETDVLSR 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +   P +       ++  +     E        LR          V          S   
Sbjct: 272 LNKKPSVVLL-LYKQSGFNTVQVSERVLKELEELRKELPADAGYDVVFDQADFINKSLGE 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L + VL++ +   +  L+   SI +++I T  L+     TL L S+ G+ 
Sbjct: 331 VVENAVSGALLAVAVLYLFLRDLRTTLIIGISIPISIITTFILVYFNKITLNLMSLGGLA 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LG+G+ VD++I+V + I     + +    +   G       +  + +T ++  + + F  
Sbjct: 391 LGVGMLVDNSIVVLDNIFRHREEGEDRVTAAISGTDEVTRAVMATTLTTVVVFLPIVFVE 450

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-----------KSIDINP 527
           G      +  A+T+  S+L S+  +++++  +   +I  +K            +  D   
Sbjct: 451 GITAQLFKELALTVTYSLLASLAVSLTLIPLLSSRLIGGEKKEQIVSGPAGLGRKFDAAY 510

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                   + +       +      +  F +    +             G I + V    
Sbjct: 511 KRVLAFYGNLLKWALNHRKTVIGVAAAAFVVSLALIPLVGSEFLPKFDTGMITMTVQMPD 570

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +  +   ++ +     +    +   N +        +    T ++ +      +   
Sbjct: 571 GTRIEEMERAVDEINSKLDAIPEIESVLNIIGFSNQGQENDNEATIMVRLKPLAERKRTS 630

Query: 648 L 648
            
Sbjct: 631 D 631



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 68/158 (43%), Gaps = 7/158 (4%)

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + +   F+        + T+ L +   +    L G   N+ ++  ++ L+G  V++ +
Sbjct: 868  VYMVMAAEFESLVQPFVIMFTVPLSVIGVVLSLLLTGRSLNIASIIGIIMLVGIVVDNAI 927

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            V+ D +    +L    +S  + I K+    L   + T++   + + P+A+    GG +  
Sbjct: 928  VLIDFVN---QLRQKGLSREEAILKAGPIRLRPILMTTLTTILGLFPLALGFGEGGEMRA 984

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            S A  +  G++V+   ++ +   I     D+     RI
Sbjct: 985  SLATAVIGGLLVSTMLTLVVIPVIYTVFEDFEKIIGRI 1022



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 82/252 (32%), Gaps = 6/252 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V     + LS V    E  +   +S  N       L+  Q          RVL+ +++  
Sbjct: 246 VSGGGSIPLSSVAKIEEVEETDVLSRLNKKPSVVLLLYKQSGFNTVQVSERVLKELEELR 305

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            E+   +           I++ L       V  + +A+ +           L    ++ +
Sbjct: 306 KELPADAGYDVVFDQADFINKSLGEVVENAVSGALLAVAVLYLFLRDLRTTLIIGISIPI 365

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T        I  NL ++  +   +G  V++ +VV D +    +             
Sbjct: 366 SIITTFILVYFNKITLNLMSLGGLALGVGMLVDNSIVVLDNI---FRHREEGEDRVTAAI 422

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              +E     + T++   +  LP+    G    +    A+ + + ++ + + S+ +   +
Sbjct: 423 SGTDEVTRAVMATTLTTVVVFLPIVFVEGITAQLFKELALTVTYSLLASLAVSLTLIPLL 482

Query: 820 LLFIYDWRAKNA 831
              +     K  
Sbjct: 483 SSRLIGGEKKEQ 494


>gi|227329100|ref|ZP_03833124.1| multidrug efflux system subunit MdtC [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 1026

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/604 (10%), Positives = 147/604 (24%), Gaps = 24/604 (3%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +     +        +      ++ L F   R     A 
Sbjct: 47  VSASLPGASPETMASAVATPLERALGRIAGVSEMTSTSSLGSTRVILVFNLDRDINGAAR 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    + L                 + V+    +        +       Q   +
Sbjct: 107 DVQAAINAAQNLLPSGMSSRPTYRKVNPSDAPVMI-LTLTSDTYSQGQLYDFASTQLSQK 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I   E           L  +    +P  L     +  ++       N  +          
Sbjct: 166 ISQMEGVGDVSIGGSSLPAVRVALNPVALFNQGISLDEVRQAIAQANVRQPLGNVENSQK 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    ++                           +                 +   
Sbjct: 226 SWQIQTNDELKTA--------------------DAYAPLIIHYNNGAAVRLSDVATVEDS 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +    +  +  +      +       +   T++        LRA         V +    
Sbjct: 266 VQNSRNAGMANSKPAILVMIRRAPDANIITTVDNIRAAMPELRASLPAEIQLDVAQDRSP 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S +  + +  I   LV++V+F+ +   +   +   ++ +++I T A + L G +L 
Sbjct: 326 TIRASLAEVEQSLVIAVALVILVVFLFLRSARATAIPALAVPVSLIGTFAAMYLCGFSLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I+V E I            +   G      T+   +++ +  
Sbjct: 386 NLSLMALTIATGFVVDDAIVVLENISRHIEAGMKPLQASLQGVREVGFTVLSMSLSLVAV 445

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L    G      R FA+T+ ++I+IS+  ++++   +   ++R    +S        
Sbjct: 446 FIPLLLMDGLPGRLFREFAVTLSVAIMISLLISLTLTPMLCARLLRAVPKRSQPRIRGFN 505

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L+                   +L  +     L               Q        + 
Sbjct: 506 RVLLAMQQGYGRSLKWVLNHARWVLLLLLGTIALNVWLYISIPKTFFPEQDTGRLMGFIQ 565

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                S                 +        +  G       +   +K      V    
Sbjct: 566 ADQSISFQAMTVKLQNFMTIVSSDPAVDNVNGFTGGSRTNSGSMFISLKPLSERDVSAQQ 625

Query: 651 IQNT 654
           + + 
Sbjct: 626 VISR 629



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 71/218 (32%), Gaps = 6/218 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            ++R             +   + +    +     +   +   P I   L       VI  
Sbjct: 283 VMIRRAPDANIITTVDNIRAAMPELRASLPAEIQLDVAQDRSPTIRASLAEVEQSLVIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           A+ +L+                 + + +  T     L G   N  ++ A+    G+ V+D
Sbjct: 343 ALVILVVFLFLRSARATAIPALAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
            +VV + +    +     +       + + E     +  S++     +P+ +     G +
Sbjct: 403 AIVVLENI---SRHIEAGMKPLQASLQGVREVGFTVLSMSLSLVAVFIPLLLMDGLPGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              FA+ ++  I+++   S+ +   +   +     K +
Sbjct: 460 FREFAVTLSVAIMISLLISLTLTPMLCARLLRAVPKRS 497



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 90/221 (40%), Gaps = 10/221 (4%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +    +     +++ +T +   S ++       +  ++     ++ ++ + I 
Sbjct: 803  TISFNLPEGTDLSSATAAIERTMTSLGVPSAVRGQFSGTAQAFQQSQSSQLLLILAAIIT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L     FG  F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGVLYESYVHPLTILSTLPSAGVGALLALEWFGAPFSLVALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D     +   ++ +S +D I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVD--FALVAQRSSGLSAQDAIFQACLLRFRPIMMTTLAALFGALPLVLTSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYD----WRAKNAR 832
               I +  G+V++   +++    + LF        R K  +
Sbjct: 981  PLGITIVGGLVMSQILTLYTTPVVYLFFDKLRNIRRKKPGK 1021


>gi|311106120|ref|YP_003978973.1| multidrug resistance protein [Achromobacter xylosoxidans A8]
 gi|310760809|gb|ADP16258.1| multidrug resistance protein MdtB 2 [Achromobacter xylosoxidans A8]
          Length = 1026

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/616 (10%), Positives = 159/616 (25%), Gaps = 43/616 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                  L   +   G+L           +   P                   +      
Sbjct: 10  RPVATSFLMIALLLSGILA-----WRMLPVAALPQVDYPI-----------IQVTTQYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              +     +    +     +        +     + ITL F+          +V   + 
Sbjct: 54  ASPNVTARTVTAPLERRFGQIPGLKQMSSTSGSGISVITLQFSLDVSLGVAEQEVQAAIS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  D     +          +L+   +        +    +  +   ++      
Sbjct: 114 ASGALLPNDLPTPPVYRKVNPADVPILT-LAVTSDSLPLPQVYDLVDTRMTQRLSQLSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      +  + +P  L       A +       N+++    F            
Sbjct: 173 GMVSLAGGQRPAVRVQVNPMALAARGLQLADVQEAISKANSNQPKGSFDGPVRS------ 226

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                             AN   ++ +   ++                 +          
Sbjct: 227 --------------VIMDANDQLQSAEEYRELIVAWRNGAPVRLGQVATVEDGAEDRYLA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +   +     +    L   L A         V      +   S  
Sbjct: 273 AWVDKQPAVLVNIQRQPGANVIAVADQVKALLPQLTASLPAAAQVRVLTDRTESIRASVR 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +   A   GLV++V F+ +      L+   ++ L++I T   + L G +    ++  +
Sbjct: 333 GVQWELAFAVGLVVLVTFLFLRNLPATLIPSLAVPLSLIGTFGFMHLAGFSTNNLTLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +G G  VD  I++ E I     +  S   +   G  +   T+    ++ +   + L F 
Sbjct: 393 TIGAGFVVDDAIVMLENIARYREQGHSPMAAALKGAGQIGFTLVSLTLSLIAVLIPLLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R FA+T+ ++ILIS+  ++++   M   +       +               
Sbjct: 453 EDVVGRLFREFAVTLAVAILISLAVSLTLTPMMCARL-LPAHEPTRPGLLDRVQARYAGW 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           + +     R     +    ++  +  L      +     G +Q    +++      +   
Sbjct: 512 LDLTLRHQRLTLAVMLATVALTGLLYLAVPKGFFPTQDGGTLQGVTQSSQSTSFDAMSRR 571

Query: 598 LESLQIGDISFQNFDG 613
            +++    ++  +   
Sbjct: 572 QQAVAAALLADPDVAS 587



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 80/217 (36%), Gaps = 6/217 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V L +      +    +  ++    EI    +++          +  +   +  ++ + +
Sbjct: 799  VNLSFNLPADGSLGEAIAAIESAQQEIGMPLSVELRLQGAAAAFQASLSNTLWLMLAAVV 858

Query: 679  AMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             M + + + ++     +  ++TL            L G   +L AV  ++ LIG    + 
Sbjct: 859  TMYLVLGMLYESAIHPVTILSTLPSAAVGAFLALLLTGRPLDLIAVIGIILLIGLVKKNG 918

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +     +  +  +  I ++    L   + T++AA    LP+ +    G  + 
Sbjct: 919  IMMVDFALE--AERSRGLEPQAAIREAALLRLRPILMTTLAALFGALPLMLATGSGAELR 976

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  M  G++V+   ++F    + LF +    +  
Sbjct: 977  QPLGWVMVGGLLVSQVLTLFTTPAVYLFFHRLGQRRG 1013



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 60/150 (40%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           +   +  + ++ ++++R      L     + L +  T GF  L G   N   + A+    
Sbjct: 338 LAFAVGLVVLVTFLFLR-NLPATLIPSLAVPLSLIGTFGFMHLAGFSTNNLTLMALTIGA 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +      S      K   +     V  +++    ++P+    
Sbjct: 397 GFVVDDAIVMLENI---ARYREQGHSPMAAALKGAGQIGFTLVSLTLSLIAVLIPLLFME 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++ + S+ +  
Sbjct: 454 DVVGRLFREFAVTLAVAILISLAVSLTLTP 483


>gi|320156945|ref|YP_004189324.1| membrane fusion protein of RND family multidrug efflux pump [Vibrio
           vulnificus MO6-24/O]
 gi|319932257|gb|ADV87121.1| membrane fusion protein of RND family multidrug efflux pump [Vibrio
           vulnificus MO6-24/O]
          Length = 1037

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/651 (9%), Positives = 181/651 (27%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      +  
Sbjct: 9   KRPVAALVLSLLLCVFGFVS-----FSKLAVREMPDIESPVV---------SISTRYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + V    +  +      + +  I R  +D+  +     
Sbjct: 115 AQRSLPEEADDPIVFKNNGSGEASVYINLSSSE--MDRTQLTDYIERVLMDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T   ++      N    G                
Sbjct: 173 SVDISGGLYKVMYVKLSPELMAGRGVTATDITAALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +          +     ++           
Sbjct: 219 -----VRNDQTVMSVRTARSYNSVEDFQYLVVKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S S 
Sbjct: 274 KSDGVVNVSMGIVPQSDANPLEVAKRVHEEVDKVQKFLPEGTRLAIDYDSTVFIERSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   I++    K+   + +   F   +  
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSKILKANVKKNRFNDVVDVLFGKLESG 513

Query: 539 AIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               ++    +  +   I+ +         + +   +  +    +     R  D +    
Sbjct: 514 YRALLKRALAWRWLAPVIILACMGGSYALMNQVPAQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ + +       G+          P            V   + +   
Sbjct: 574 MSANMDLVEERLMPLLGQGFLKSFSIQSPAFGGQAGDQTGFVIMILDDWNE 624



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 88/260 (33%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F  +    V +   P        V + V +
Sbjct: 243 LVVKRASDNTPIYLKDVADVFIGAENENSTFKSDGVVNVSMGIVPQSDANPLEVAKRVHE 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ ++           +    +  + R        + +    + +++YI+I  +    L 
Sbjct: 303 EVDKVQKFLPEGTRLAIDYDSTVFIERSISEVYSTLFITGGLVILVLYIFI-GQARATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  +      FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAVTVPVSLISSFIAAYYFGFSINLITLMALILSIGLVVDDAIVVVENI---FHHIEKGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
           S      K   E     + T++   +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 SPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDGMVGLLFTEFSVLLAMSVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   I     K  R
Sbjct: 479 LTLTPVLGSKILKANVKKNR 498



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 48/143 (33%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        +     N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMFTVPMGVFGGFLGLLIMQQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
            +L      F   I  +    L   + T+       +P+ +  G       +    + FG+
Sbjct: 931  QLRDRGFEFEQAIIDASARRLRPILMTAFTTLAGAIPLILSDGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
              A   ++F+   +   I  +  
Sbjct: 991  GFATLVTLFVIPAMYRLISRYTE 1013


>gi|284006852|emb|CBA72118.1| multidrug efflux system subunit MdtB [Arsenophonus nasoniae]
          Length = 1025

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/629 (12%), Positives = 168/629 (26%), Gaps = 40/629 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L  +   +       FP                     L    
Sbjct: 10  RPVTSTLLSVAITLCGVLTFMLLPIAPLPQVDFPVIK--------------VTASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +       I L F   +   + A +V   L   
Sbjct: 56  PETMASSVATPLERALGQIAGINEMTSNSSLGSTSIMLEFDLDKDINSAAREVQAALNAA 115

Query: 123 NSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            S L      +     T   +  I++             E       +   ++       
Sbjct: 116 QSMLPTGMPSRPRYYKTNPADAPIMILTLTSKS--YPIGEIYDIASTRLAQRLAQIAGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S   L  +  E +P+ L         +       N  +          R       
Sbjct: 174 EVSVSGGSLPAVRIELNPTALFNQGIALDAVREAVNDANVRRPQGYLHDEQSRWQIKTND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                       I                 I   +  +    
Sbjct: 234 ELKTAAD--------------------YQPIIIHSHNNSVVRLQDVAKIKDSVQDIRTAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         +   +A  +   T++        L           + +        S + 
Sbjct: 274 MAAGQPAIILVIRREAGANIIATVDRIRAELPELSKMLPASINLAIAQDRTPTIRASLTE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI  GLV++V+F+ +  G+  ++    + +++I + + + L G +L   S+  + 
Sbjct: 334 VERALAIAIGLVILVVFLFLRSGRATIIPAIVVPVSLIGSFSAMYLCGFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I        +   +  +G S    T+   +I+ +   + LFF G
Sbjct: 394 VATGFVVDDAIVVIENIMRHIENGLAPHKAAIIGVSEVGFTVLSMSISLIAVFIPLFFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+T+  +ILIS+F ++++   M  ++++  +  S          L+    
Sbjct: 454 GLIGRFFHEFALTLATAILISLFVSLTLTPMMCAYLLKKTQKHSPPKISGVGRLLLKIQQ 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           +             ++   + +   L  +            Q        V      S  
Sbjct: 514 SYGVTLNWVLAHQRNVSLVLLTTIGLNIYLYISIPKTFFPEQDTGRLLGYVRADQSISFQ 573

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                          + +      +  G 
Sbjct: 574 AMKSKMTQFMTQLVKDSSIDNVTGFTGGS 602



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 71/164 (43%), Gaps = 7/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + +++++++R      + AI  + + +  +     L G   N  ++ A+    
Sbjct: 338 LAIAIGLVILVVFLFLRSGRATIIPAIV-VPVSLIGSFSAMYLCGFSLNNLSLMALTVAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +   M+     ++        ++E     +  S++     +P+   G
Sbjct: 397 GFVVDDAIVVIENI---MRHIENGLAPHKAAIIGVSEVGFTVLSMSISLIAVFIPLFFMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           G +      FA+ +A  I+++   S+ +   +  ++     K++
Sbjct: 454 GLIGRFFHEFALTLATAILISLFVSLTLTPMMCAYLLKKTQKHS 497



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/212 (17%), Positives = 89/212 (41%), Gaps = 6/212 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +       +E ++  + ++    T+++T     KI +E ++  +  +I +  A
Sbjct: 803  TISFNLNEGYTLNDAMEAIELTMIQLSVPPTVRSTFSGTAKIFQETLKTQLFLIIAAIGA 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + + I ++ +   L  I+TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYLVLGILYESYIHPLTIISTLPSAGLGALLALELFNTPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D            +S  D I K+        + T++AA   +LP+A+    G  +  
Sbjct: 923  IMVD--FAIQAQRQGQLSAHDAIFKASLLRFRPILMTTIAAIFGMLPLALGNGEGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               I +  G++V+   +++    + L     +
Sbjct: 981  PLGITIVGGLIVSQILTLYTTPVVYLAFDKLQ 1012


>gi|190576105|ref|YP_001973950.1| putative multidrug efflux system transmembrane protein
           [Stenotrophomonas maltophilia K279a]
 gi|190014027|emb|CAQ47667.1| putative multidrug efflux system transmembrane protein
           [Stenotrophomonas maltophilia K279a]
          Length = 1077

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 50/491 (10%), Positives = 140/491 (28%), Gaps = 35/491 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +   P     + +                     +   +    +     +    +
Sbjct: 29  YRKLPVSALPEIDAPSLV---------VTTQYPGANATTMASLVTTPLERQFGQISGLEL 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                    + I L F+  R  +  A  V   ++     L        +        + +
Sbjct: 80  MTSDSSAGLSTIILQFSMDRDIDIAAQDVQAAIRQAT--LPSSLPYQPVYNRVNPADAAI 137

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++   +        + +         ++   +       +  +   +  + +P++L  + 
Sbjct: 138 VT-LKLTSDTRPLRDVNNYADSILAQRLSQVQGVGLVSIAGNVRPAVRIQVNPAQLSNMG 196

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T  ++       N +        +    S G    +    E                  
Sbjct: 197 LTLEQLRSALTQANVNAPKGSLNGKTQSYSIGTNDQLASAAE------------------ 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
               D        R         +   +                     +   +   T+E
Sbjct: 239 --YRDTIISYKNGRPVRLSDVAEVVDGVENDQLAAWADGKPAVLLEVRRQPGANIVQTVE 296

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
               +   L+          +          S    + T  +  GLV+ V+F+ +     
Sbjct: 297 RIRAILPQLQGVLPADVHLEIFNDRTETIRASVHEVQFTLILTIGLVVAVIFVFLRRLWA 356

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            ++   ++ L++  T A+++  G +L   S+  +V+  G  VD  I++ E I     + +
Sbjct: 357 TIIPSVAVPLSLAGTFAVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENIVRYIEQGK 416

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           S   + ++G  +   T+    ++ +   + L       G     FA  + +++++SM  +
Sbjct: 417 SGKEAAEIGARQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLSIAVVLSMLIS 476

Query: 504 ISIVRAMMIFI 514
           +++   M  ++
Sbjct: 477 LTLTPMMCAYL 487



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 88/244 (36%), Gaps = 12/244 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +++ +      +    E +   +        +    V L+ +        + +E ++  
Sbjct: 242 TIISYKNGRPVRLSDVAEVVDGVENDQLAAWADGKPAVLLEVRRQPGANIVQTVERIRAI 301

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGA 696
           + ++  +        +    +  +          + + I  +  +I++++R  W   +  
Sbjct: 302 LPQLQGVLPADVHLEIFNDRTETIRASVHEVQFTLILTIGLVVAVIFVFLRRLW-ATIIP 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +   ++      S
Sbjct: 361 SVAVPLSLAGTFAVMAFAGMSLDNLSLMALVVATGFVVDDAIVMIENI---VRYIEQGKS 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            ++  +    +     +  +++     LP+ +  G        FA  ++  +V++   S+
Sbjct: 418 GKEAAEIGARQIGFTVLSLTVSLVAVFLPLLLMPGVTGRLFHEFAWVLSIAVVLSMLISL 477

Query: 814 FIAA 817
            +  
Sbjct: 478 TLTP 481



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 88/252 (34%), Gaps = 11/252 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V A   + LS +     S     +S Q           +      S A   + E    
Sbjct: 812  ITVGAGNIIPLSALAEGKVSSAPLVVSHQQQLPAVTVSFNVAPGYSLSEAVRAIQETKDS 871

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                    +              ++    +  ++ S + + I + + ++ +   +  I+T
Sbjct: 872  LDMPTHLHAEFIGKAAEFTGSQTDV----VWLLLASLVVIYIVLGVLYESYIHPITIIST 927

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    L G+  ++  +  ++ LIG    + +++ D   +  +      +  +
Sbjct: 928  LPPAGVGALLALMLCGLSLSVDGIVGIVLLIGIVKKNGIMMVDFAIEARRA---GANAHE 984

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+ AA +  LP+A+    G  +     I +  G++++   +++  
Sbjct: 985  AIRRACLLRFRPIMMTTAAAMLGALPLALGTGIGSELRRPLGIAIVGGLLLSQLVTLYTT 1044

Query: 817  APILLFIYDWRA 828
              I L++  +  
Sbjct: 1045 PVIYLYMERFSE 1056


>gi|150006272|ref|YP_001301016.1| putative aminoglycoside efflux pump [Bacteroides vulgatus ATCC
           8482]
 gi|149934696|gb|ABR41394.1| putative aminoglycoside efflux pump [Bacteroides vulgatus ATCC
           8482]
          Length = 1033

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/648 (10%), Positives = 173/648 (26%), Gaps = 44/648 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   L    G+ 
Sbjct: 31  LPIDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQELNGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMESNSSNSGGFSATVTFDISADPDLAAVEIQNRIKLAESRLPAEVIQNGISVEKQAASQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++             I  S       +D I       +          +     P +L  
Sbjct: 138 LLTLCLTSTDPKFDEIYLSNFATLNVLDLIRRIPGVGRVSNIGSRYYAMQIGVQPDKLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T A +       N      + G + ++  D     +  +  +S              
Sbjct: 198 FGLTVADLQNALKDQNRESAAGVLGQQPVQGLD-VTIPITTQGRLS-------------T 243

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 I            +                +    
Sbjct: 244 VSQFEEIVVRANADGSIIRLRDVARISLEAQSYNTESAINKENAAVLAIYMLPGANAMEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            ++       +           +          S      T      LV+IV+++ +   
Sbjct: 304 AKSVKEAMEEISKNFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVIIVVYLSLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  ++   ++ +++I T   + + G +L + ++ G+VL IG+ VD  I+V E +     +
Sbjct: 364 RATVIPLVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMEE 423

Query: 445 NQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
            + S + +           I  +++      V + F G   G   R F +T+ +S+L+S 
Sbjct: 424 EKLSPYQATKKAMEGLTGAIIATSLVLAAVFVPVSFLGGITGQLYRQFTVTIVVSVLLST 483

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR--------ARFWGVGI 552
             A+++   M   I++ +           R          +++          R      
Sbjct: 484 VVALTLSPVMCSLILKPEDPNKKKNIVFRRINEWLAIGNHKYVGLIKHIVKHPRRVLSTF 543

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            ++     +           I+ +G  ++ +       L   R   E      +     +
Sbjct: 544 GMVLIAILLIHRIIPTSFLPIEDQGYFKIELELPEGATLERTRIVTERAVEYLMKNPAVE 603

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
             ++                  + +   +  +   +  I         
Sbjct: 604 YVQSVAGSSPRVGTSQARSELTVILKPWEERDSQTIDNIMAQVKKDMS 651



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/297 (11%), Positives = 102/297 (34%), Gaps = 13/297 (4%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            F   + +   + +        +   +        +    + +   R  D +++   L SL
Sbjct: 741  FSTMKAYTGSVYVNDFNMFNRIYRVYIQAEAPYREHKENINLFFVRGTDNAMI--PLTSL 798

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                 +      ++  +       G++       + ++                      
Sbjct: 799  GTTSYTTGPGSIKRFNMFNSSVILGEAADGYSSGQAMEIIEQIAREHLPENIGVEWSGLS 858

Query: 662  SRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTL-ILDITKTLGFFALFGIE 717
             +E    G  G++++ + M +++    +   W   +  + +L +  +   LG +   G+E
Sbjct: 859  FQEKQAGGQTGMVLALVFMFVFLFLAALYESWMVPVAVLLSLPVAALGAYLGVWG-CGLE 917

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             ++     ++ L+G +  + +++ +  ++ +      +        +        + TS+
Sbjct: 918  NDVYFQIGLVMLVGLAAKNAILIVEFAKEQV---DKGVDVVQAALHASQLRFRPILMTSL 974

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A  + +LPM +    G +   +    + FG++ A +  I +     + IY  +AK  
Sbjct: 975  AFILGMLPMVIASGPGSASRQAIGTGVFFGMIFAVTVGILLVPFFFVLIYKMKAKMK 1031



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 75/223 (33%), Gaps = 12/223 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               ++ V AN    +  +R                   K     L            V 
Sbjct: 245 SQFEEIVVRANADGSIIRLRDVARISLEAQSYNTESAINKENAAVLAIYMLPGANAMEVA 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF----KWY 691
           + VK+ + EI        +  +   ++  +             A+++ I + +     W 
Sbjct: 305 KSVKEAMEEISKNFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVIIVVYLSLQSWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNM 748
             +  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV    +R+ +  
Sbjct: 365 ATVIPLVAVPISLIGTFGFMLIFGFSLNILTLLGLVLAIGIVVDDAIVVVENVERIMEE- 423

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
                 +S      K++    G  + TS+      +P++  GG
Sbjct: 424 ----EKLSPYQATKKAMEGLTGAIIATSLVLAAVFVPVSFLGG 462


>gi|188995294|ref|YP_001929546.1| putative transmembrane Acr-type transport protein [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594974|dbj|BAG33949.1| putative transmembrane Acr-type transport protein [Porphyromonas
           gingivalis ATCC 33277]
          Length = 1049

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 83/679 (12%), Positives = 194/679 (28%), Gaps = 49/679 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++++  I   GL       L +  +D +P     N +                 
Sbjct: 9   KKPVTTILIFVAIAIFGLFS-----LSRLSIDLYPKIETSNIM---------VVTSYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +          R+  + ITL F +    E   + V   L  
Sbjct: 55  SASDIENNVTKVLENTLNGVSNLKHITSKSRENASVITLQFNEGVDIEVATNDVRDKLDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V++ L  D  K ++      +I I +      Q     +  S  +  +  + +   +   
Sbjct: 115 VSNFLPDDVNKPMIFKFGTDDIPITMLSV---QAKESTMALSKILEDKVTNALARLDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    DP++L     T   +S      N +    +  +     S   Q 
Sbjct: 172 AVSIMGTVKREIQVYCDPAKLEAYNLTVEAVSQIISAENKNVPAGLIDLGNKTSSIRIQG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D  ++                      I    +G R  +      +    A      
Sbjct: 232 EFADARQL--------------------NQIVVASVGGRNVYLSDVARVEDTHAENEQES 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + ++  +              ++A                  + + + 
Sbjct: 272 YNNNVRGAMIMINKQSGANSVAISRAVRDALPEIQASLPSDVKLGTIFDTSDNIVNTINS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T AI   +V++V+   +   +   +   +I ++++ +   L   G TL + S++ + 
Sbjct: 332 LRDTIAITFVIVILVVLFFLGRWRATFIIGLTIPISLVASFIYLMATGNTLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           + IG+ VD  I+V E +     +      +   G +    ++  S +T L   + L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSYPKQAAIYGTNEVGISVIASTLTMLAVFLPLTMIQ 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINPLSRFF 532
              G   R     + + ++IS   A+S+   +   +++  K       K           
Sbjct: 452 GLTGILFRQLGWIVSIIMIISTVAALSLTPMLCSQLLQRDKKQGRLQQKLFAPIERFLDS 511

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTH---GLNYGIDFKGGIQLGVLANRPV 589
           +            R   V I   F I +  L+ T       +     G IQ+        
Sbjct: 512 VDRAYERFLNWTVRHRTVTIVSAFIIFAASLMMTPLLKTEFFPQSDNGYIQIQAEYPVGT 571

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +++ R+    +              +F V          A       +      +   +
Sbjct: 572 GVNLPRAFALRMIDSWEKEIPEIDRTSFSVGQAEASSMFAAMQDNGTNIITFHIGLTGRN 631

Query: 650 TIQNTEIVGPKISRELIRK 668
             + +        R ++  
Sbjct: 632 ERKRSMNEVADQIRIMLDD 650



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 87/240 (36%), Gaps = 7/240 (2%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L  ++           ++  +V +        A + ++E+ K+KI ++     I     
Sbjct: 793  ELGKIEELYTPPTIERKDRQRVVIVASTAVKGAALSDLVEVAKEKIAQLEIPDGIDYKIS 852

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFG 715
               +  ++        +++  I + I +  +F+        + ++    T  +    +  
Sbjct: 853  GTYEDQQKTFADLSTLMLLIVILVFIVMAAQFESLVDPFVIMFSIPFAFTGVIAGLIITN 912

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              F+  +   ++ L+G  V + +V+ D  R         +     + ++    L   + T
Sbjct: 913  TTFSAMSFIGLIMLMGIVVKNGIVLIDYTR---LCCERGMGILSAVVQAGRSRLRPVLMT 969

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++   + ++PMA+    G  +     + +A+G+ V+   ++ I   +         +  R
Sbjct: 970  TLTTILGMVPMAIGIGEGSELWQPMGVTVAWGLSVSTLITLIIVPTVYAVFASNGMRRQR 1029



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 87/250 (34%), Gaps = 7/250 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V LS V    ++    +    N +     ++  +    +SVA +R +     +I   +P
Sbjct: 251 NVYLSDVARVEDTHAENEQESYNNNVRGAMIMINKQSGANSVAISRAVRDALPEIQASLP 310

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                 T           I      + I+ + +++ +     +W        T+ + +  
Sbjct: 311 SDVKLGTIFDTSDNIVNTINSLRDTIAITFVIVILVVLFFLGRWRATFIIGLTIPISLVA 370

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           +  +    G   N+ +++++   IG  V+D +VV + +             +       N
Sbjct: 371 SFIYLMATGNTLNIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSYPKQAAIYGTN 427

Query: 767 ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++      LP+ +     G +       ++  ++++  +++ +   +   +
Sbjct: 428 EVGISVIASTLTMLAVFLPLTMIQGLTGILFRQLGWIVSIIMIISTVAALSLTPMLCSQL 487

Query: 824 YDWRAKNARI 833
                K  R+
Sbjct: 488 LQRDKKQGRL 497


>gi|262040104|ref|ZP_06013358.1| multidrug RND efflux transporter [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259042549|gb|EEW43566.1| multidrug RND efflux transporter [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1025

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 72/667 (10%), Positives = 180/667 (26%), Gaps = 44/667 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISLAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  + +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVDLNPQALFNQGVSLDAVRTAISDANVRKPQGALEDSAHRWQVQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                       +                 +   +  V +  +
Sbjct: 235 LKTAAD--------------------YQPLIVHYQNGAAVRLGDVATVSDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQQTIPAAIDLQIAQERSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENISRHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++       +  + +      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLAVSLTLTPMMCGWLLKSGKPHQPTRNRGFGRLLVAVQGG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +      +R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLKHSRLTGLVVLGTIALSVWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R  L+            D    F    +   G      +  +   +   +++     + 
Sbjct: 575 MRGKLQDFMKIIREDPAVDNVTGFTGGSRVNSGMMFITLKPRDQRHETAQQVIDRLRKKL 634

Query: 654 TEIVGPK 660
               G  
Sbjct: 635 ANEPGAN 641



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   E + + +T++   S+++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TISFNLPTGRSLSEASEAIDRAMTQLGVPSSVRGSFAGTAQVFQQTMNAQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    +F   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGVLYESYVHPLTILSTLPSAGVGALLALEIFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++  + I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRNGN--LTPEEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 71/216 (32%), Gaps = 7/216 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQQTIPAAIDLQIAQERSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---SRHLEAGMKPLQAALQGSREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FA+ ++  I ++ + S+    P++        K 
Sbjct: 461 REFAVTLSVAIGISLAVSL-TLTPMMCGWLLKSGKP 495


>gi|56552424|ref|YP_163263.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|260753901|ref|YP_003226794.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|56543998|gb|AAV90152.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|258553264|gb|ACV76210.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 1032

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/608 (11%), Positives = 162/608 (26%), Gaps = 43/608 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   GLL      L       +P+                   +     
Sbjct: 10  RPVATSLIVIAIVLAGLLGFHYMSLSALPEVDYPTIQ--------------VSTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + ++  +    +     +              + ITL F  +   +    +V   +   
Sbjct: 56  PEVISQTVSAPLERQFGQMSGLSRMTTKSAAGASVITLQFGLNEALDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N+ L  D     +        S VL+            +    +  +   +I        
Sbjct: 116 NALLPADLPAPPVYAKVNPADSPVLT-LAATSDTMPLTDVQNLVQTRLAQKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + D   L     + + +       N +     F              
Sbjct: 175 VELSGGQRPAMRIQADTQALASYGISLSTLRTAIDNANANSAKGSFDGPTRSWQINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                      ++       R         +         G  
Sbjct: 235 LLTVED--------------------YKNLIIAMRNNRPVRMSDVAQVVAGAENNHLGAY 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T++        L AG        V          S    
Sbjct: 275 YNITPAVIINVRRQPGANVIATVDNIKKQLPELEAGLPAGLKVSVVADRTTGIRASIEHV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   +V++V+F  +   +  L+A  ++ +++I + A + ++  +L   S+  + +
Sbjct: 335 EVELVLAVVMVILVIFFFLHSIRATLIAAVAVPISLIGSFAAMYMMNYSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I        + F +   G      TI    I+ +   + L F   
Sbjct: 395 ASGFVVDDAIVMIENIERHIEAGVAPFQAALKGAQEIGFTIISLTISLIAVLIPLLFMSD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFFLI 534
             G   R FA+T+ ++ILIS   ++++   +   ++   + K      I        +  
Sbjct: 455 VVGRLFREFAMTLAITILISAVVSLTLTPMLSARLLVAHRHKNPIGDRIQKGFERLEYHY 514

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +           V   + F   ++  +      + +   G +++    +  V  S +
Sbjct: 515 EHGLRWVLGHQTLTLVLTIVTFIGTALFYVAIPKGLFPLQATGQLRIQTDTSPDVSYSRM 574

Query: 595 RSNLESLQ 602
               +   
Sbjct: 575 AELQKQAA 582



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 88/243 (36%), Gaps = 7/243 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +  NRPV +S V   +   +   +           +   +    + +A    ++    
Sbjct: 246 IAMRNNRPVRMSDVAQVVAGAENNHLGAYYNITPAVIINVRRQPGANVIATVDNIKKQLP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
           ++   +P     +         R  I    V ++++ + +++ I+         L A   
Sbjct: 306 ELEAGLPAGLKVSVVADRTTGIRASIEHVEVELVLAVVMVILVIFFFLHSIRATLIAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  +     +     N  ++ A+    G+ V+D +V+ + +    +     ++   
Sbjct: 366 VPISLIGSFAAMYMMNYSLNNLSLMALTIASGFVVDDAIVMIENI---ERHIEAGVAPFQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              K   E     +  +++    ++P+       G +   FA+ +A  I+++A  S+ + 
Sbjct: 423 AALKGAQEIGFTIISLTISLIAVLIPLLFMSDVVGRLFREFAMTLAITILISAVVSLTLT 482

Query: 817 API 819
             +
Sbjct: 483 PML 485



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 3/88 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                   S  + I  +        + T++AA  + +P+ +    G  +     + +  G+
Sbjct: 932  AEREEKKSPEEAIFNAATLRFRPILMTTLAALFAAIPLMIGHGSGAELRRPLGLAIFGGL 991

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            + +   ++F    I LF      K A +
Sbjct: 992  LASQMLTVFTTPVIYLFFDRLGQKIAHL 1019


>gi|197116463|ref|YP_002136890.1| RND family efflux pump inner membrane protein [Geobacter
           bemidjiensis Bem]
 gi|197085823|gb|ACH37094.1| efflux pump, RND family, inner membrane protein, AcrB/AcrD/AcrF
           family [Geobacter bemidjiensis Bem]
          Length = 1033

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/677 (10%), Positives = 179/677 (26%), Gaps = 47/677 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   I   G+            ++  P+                    L   
Sbjct: 9   RRPIMTSLVMIAILIFGIAA-----YRLLPVNDLPNVDFPTIQ---------VSANLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +   S +        +      +IT+ F   R  +  A  V   L  
Sbjct: 55  NPDTMASAVATPLENQLSTIAGVDSMTSTNGIGTTRITIQFTLDRDIDAAAQDVQAALSL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               L  +                ++    +   +   AI+           ++      
Sbjct: 115 ATRDLPKNMPTPPSFRKVNPADQPVLYLALSSPTLPLSAID--EYAQTIIARRLSTISGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  + DP  +        +++                           
Sbjct: 173 AQVNVWGSQKYAVRAQLDPRIMASRRIGIDEVATAI--------------------GAAN 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +   V       +    N      +    I+                +   +      
Sbjct: 213 VNMPTGVLDGAKQAHTIDTNGQLYKAEAYRPIAVAYRDGAPIRLEEIGKVIDSVENARTA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    +++   L    R          V          S +
Sbjct: 273 SWYNNTRAIILTVQRQPGTNTIEVVDSVKKLLPAFRGQMPASVELNVLYDRSTMIRESMT 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +   LV++V+F+ +      ++   ++ ++++ T +++ LLG ++   S+  I
Sbjct: 333 DVKYTLCLTICLVIMVVFLFLRNFSATVIPSLAVPMSIVGTFSVMYLLGFSVNNISMMAI 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I++ E I     K +    +   G      TI    I+ +   + + F 
Sbjct: 393 TLAVGFVVDDAIVMLENIVRHMEKGEGAMQAALKGSREIGFTIVSMTISLVAVFIPVLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530
               G  +  FA+T+  +IL+S F ++++   +              +    ++      
Sbjct: 453 RGILGRLLHEFAVTISAAILVSGFVSLTLTPMLCSRFLKPQSAIHHGRFYLVMERFFDGL 512

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L    ++      R   +   I+  +     +         +  G +     A +   
Sbjct: 513 RDLYGRTLSQVLSHRRVTMMVTLIITILTVWLFVRIPTGFLPSEDTGRLNADTEAAQGTS 572

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + ++   ES+        N +G  + +              R+    ++K++    +  
Sbjct: 573 FAEMKQLQESVAQIIAKDPNIEGFMSSIGSGGGASNTGRLFMRLKPRSERKLSADEIIQE 632

Query: 651 IQNTEIVGPKISRELIR 667
           ++        I   L  
Sbjct: 633 LRPKLAKLRGIKVYLRN 649



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 78/227 (34%), Gaps = 12/227 (5%)

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           +   + +           + L  Q         V++ VKK +              V   
Sbjct: 263 IDSVENARTASWYNNTRAIILTVQRQPGTNTIEVVDSVKKLLPAFRGQMPASVELNVLYD 322

Query: 661 ISRELIRKGIVG-----VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            S  +            + I  + M++++++R  +   +     + + I  T     L G
Sbjct: 323 RSTMIRESMTDVKYTLCLTICLVIMVVFLFLR-NFSATVIPSLAVPMSIVGTFSVMYLLG 381

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N  ++ A+   +G+ V+D +V+ + +   ++             K   E     V  
Sbjct: 382 FSVNNISMMAITLAVGFVVDDAIVMLENI---VRHMEKGEGAMQAALKGSREIGFTIVSM 438

Query: 776 SMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++     +P+       G ++  FA+ ++  I+V+   S+ +   +
Sbjct: 439 TISLVAVFIPVLFMRGILGRLLHEFAVTISAAILVSGFVSLTLTPML 485



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 87/252 (34%), Gaps = 9/252 (3%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G + +   +   V L  + +  +++    ++        N    L+       A   V +
Sbjct: 767  GMLYIHSSSGDLVPLDTIATISKTIGPLTVNHLQQLPAVNISFNLRPDVSLGDAIAIVDK 826

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +    +   V        +      S  LI   +   +I  +  ++Y      +   +  
Sbjct: 827  LAPSILPPGVSKQFQGTAQAFQSSFSGLLILLALAVFVIYLVLGVLY----ESYIHPVTI 882

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            ++ L       L    LFG E N+     ++ LIG    + +++ D   +         S
Sbjct: 883  LSGLPSAGFGALVTLMLFGSELNIYGFVGIIMLIGIVKKNAIMMIDFALE--AERVEGKS 940

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
              D I +         + T+MAA +  LP+A+    GG       + +  G++ +   ++
Sbjct: 941  PVDAIYEGALVRFRPIMMTTMAALMGTLPIALGLGAGGEARQPLGLAVVGGLLTSQLLTL 1000

Query: 814  FIAAPILLFIYD 825
            +I   +  ++  
Sbjct: 1001 YITPVVYYYMDR 1012


>gi|37520375|ref|NP_923752.1| AcrB/AcrD/AcrF family protein [Gloeobacter violaceus PCC 7421]
 gi|35211368|dbj|BAC88747.1| AcrB/AcrD/AcrF family protein [Gloeobacter violaceus PCC 7421]
          Length = 1022

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 65/531 (12%), Positives = 159/531 (29%), Gaps = 35/531 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +   +  I L+IA      Q  ++  P+                 ++         +   
Sbjct: 13  IVIAVLFIALVIAGVVGFVQLPINENPNVDVPTV---------SVNITQSGAAPPELESQ 63

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    ++  + ++       +++   +  T+ F      +   + V   +  +  +L  D
Sbjct: 64  VTRKIEDALAGIENVEHLRSTIKDGISATTVEFVLGTDTDRAVNDVRDAVTKIRQELPQD 123

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
             + ++        ++++             + S  +       +   E   +      +
Sbjct: 124 IDEPVIARVDFVGGALMIYAVGSP--TRSTEQLSWFVDHDVSRALLTVEGVSRVQRFGGV 181

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             ++  + DP+RL  L  T  +++      N    G    +     +            +
Sbjct: 182 SREVRIDLDPNRLFALGITAEEVNRQVRALNRDLPGGRGELGGREQAIRTLGSAATVENL 241

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
               +                       G RR       ++    +       L    + 
Sbjct: 242 RATQIAL--------------------SGGRRVALADLGSVSDGASEARQLARLDGKPVV 281

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                     S     +      A L      +    +   +V     +         + 
Sbjct: 282 GFSVIRSTGSSEVAIEKGVEAQIAQLEKRFADVHF-DLVNTSVRYVHENYDASIEALWLG 340

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+++ +  G+  L+A  ++ L+ I T A++ LLG +L   S+  + L +G+ VD
Sbjct: 341 AALAVVVVYLFLRDGRATLIAGVAMPLSTIPTFAIMKLLGYSLNSLSLLALALVVGVLVD 400

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVR 486
             I+  E I    +  +  F +           +  + +T +   V + F G   G    
Sbjct: 401 DAIVEIENIDRHIKMGKPPFQAALDAADEIGLAVVATTMTIVAVFVPVGFMGGVPGQFFG 460

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            F  T+  ++L S+F A  +   M  + +  K            +  +   
Sbjct: 461 QFGFTVVAAVLFSLFVARMVTPLMAAYWLAAKPAPVRLPWYTRTYRTVLAW 511



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 66/218 (30%), Gaps = 7/218 (3%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V       +   +  V   + +       +        V             + +  +  
Sbjct: 285 VIRSTGSSEVAIEKGVEAQIAQLEKRFADVHFDLVNTSVRYVHENYDASIEALWLGAALA 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++Y+++R      L A   + L    T     L G   N  ++ A+  ++G  V+D +
Sbjct: 345 VVVVYLFLR-DGRATLIAGVAMPLSTIPTFAIMKLLGYSLNSLSLLALALVVGVLVDDAI 403

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG--- 795
           V  + +    +              + +E     V T+M      +P+   GG       
Sbjct: 404 VEIENI---DRHIKMGKPPFQAALDAADEIGLAVVATTMTIVAVFVPVGFMGGVPGQFFG 460

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            F   +   ++ +   +  +   +  +    +    R+
Sbjct: 461 QFGFTVVAAVLFSLFVARMVTPLMAAYWLAAKPAPVRL 498



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 62/148 (41%), Gaps = 4/148 (2%)

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
            +  ++  +    +++  + +   + + F  ++  L  +  L L I   L    + G   
Sbjct: 829 DLQDQVSERFGTALLLGVLLIYGVLVLLFGDFFHPLTIMAALPLSIGGALAGLLVTGKPL 888

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            L A+  +L L+G    + +++ +     + +    +  R+ + ++  + L   + T++A
Sbjct: 889 VLPALIGILMLMGIVTKNSILLVE--YATVLIEKARLPRREALMEAGIDRLQPILMTTIA 946

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIV 806
               ++P+A  G      F  PMA  +V
Sbjct: 947 MIAGMMPIA-LGIGAGSEFRSPMAVAVV 973


>gi|332092345|gb|EGI97419.1| multidrug resistance protein mdtC [Shigella dysenteriae 155-74]
          Length = 1029

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVETILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 90/221 (40%), Gaps = 10/221 (4%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST+  +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVLGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA----VAAVLTLIGYSV 734
            + I + I ++ +   L  ++TL       L    LF   FN       +  ++ LIG   
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFNAPFSLIALIGIMLLIGIVK 922

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
             + +++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG   
Sbjct: 923  KNAIMMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGS 980

Query: 795  G---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                   I +  G+V++   +++    + LF    R + +R
Sbjct: 981  KLQQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1021


>gi|241761536|ref|ZP_04759623.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241373844|gb|EER63377.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 1032

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/608 (11%), Positives = 162/608 (26%), Gaps = 43/608 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   GLL      L       +P+                   +     
Sbjct: 10  RPVATSLIVIAIVLAGLLGFHYMSLSALPEVDYPTIQ--------------VSTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + ++  +    +     +              + ITL F  +   +    +V   +   
Sbjct: 56  PEVISQTVSAPLERQFGQMSGLSRMTTKSAAGASVITLQFGLNEALDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N+ L  D     +        S VL+            +    +  +   +I        
Sbjct: 116 NALLPADLPAPPVYAKVNPADSPVLT-LAATSDTMPLTDVQNLVQTRLAQKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + D   L     + + +       N +     F              
Sbjct: 175 VELSGGQRPAMRIQADTQALASYGISLSTLRTAIDNANANSAKGSFDGPTRSWQINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                      ++       R         +         G  
Sbjct: 235 LLTVED--------------------YKNLIIAMRNNRPVRMSDVAQVVAGAENNHLGAY 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T++        L AG        V          S    
Sbjct: 275 YNITPAVIINVRRQPGANVIATVDNIKKQLPELEAGLPAGLKVSVVADRTTGIRASIEHV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   +V++V+F  +   +  L+A  ++ +++I + A + ++  +L   S+  + +
Sbjct: 335 EVELVLAVVMVILVIFFFLHSIRATLIAAVAVPISLIGSFAAMYMMNYSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I        + F +   G      TI    I+ +   + L F   
Sbjct: 395 ASGFVVDDAIVMIENIERHIEAGVAPFQAALKGAQEIGFTIISLTISLIAVLIPLLFMSD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFFLI 534
             G   R FA+T+ ++ILIS   ++++   +   ++   + K      I        +  
Sbjct: 455 VVGRLFREFAMTLAITILISAVVSLTLTPMLSARLLVAHRHKNPIGDRIQKGFERLEYHY 514

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +           V   + F   ++  +      + +   G +++    +  V  S +
Sbjct: 515 EHGLRWVLGHQTLTLVLTIVTFIGTALFYVAIPKGLFPLQATGQLRIQTDTSPDVSYSRM 574

Query: 595 RSNLESLQ 602
               +   
Sbjct: 575 AELQKQAA 582



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 88/243 (36%), Gaps = 7/243 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +  NRPV +S V   +   +   +           +   +    + +A    ++    
Sbjct: 246 IAMRNNRPVRMSDVAQVVAGAENNHLGAYYNITPAVIINVRRQPGANVIATVDNIKKQLP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
           ++   +P     +         R  I    V ++++ + +++ I+         L A   
Sbjct: 306 ELEAGLPAGLKVSVVADRTTGIRASIEHVEVELVLAVVMVILVIFFFLHSIRATLIAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  +     +     N  ++ A+    G+ V+D +V+ + +    +     ++   
Sbjct: 366 VPISLIGSFAAMYMMNYSLNNLSLMALTIASGFVVDDAIVMIENI---ERHIEAGVAPFQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              K   E     +  +++    ++P+       G +   FA+ +A  I+++A  S+ + 
Sbjct: 423 AALKGAQEIGFTIISLTISLIAVLIPLLFMSDVVGRLFREFAMTLAITILISAVVSLTLT 482

Query: 817 API 819
             +
Sbjct: 483 PML 485



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 3/86 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                   S  + I  +        + T++AA  + +P+ +    G  +     + +  G+
Sbjct: 932  AEREEKKSPEEAIFNAATLRFRPILMTTLAALFAAIPLMIGHGSGAELRRPLGLAIFGGL 991

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
            + +   ++F    I LF      K A
Sbjct: 992  LASQMLTVFTTPVIYLFFDRLGQKIA 1017


>gi|238788136|ref|ZP_04631931.1| Multidrug resistance protein mdtB [Yersinia frederiksenii ATCC
           33641]
 gi|238723723|gb|EEQ15368.1| Multidrug resistance protein mdtB [Yersinia frederiksenii ATCC
           33641]
          Length = 1056

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 61/542 (11%), Positives = 146/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMVAILLAGIM-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPTDLPYPPIYSKVNPADPPILT-LAVTSTAIPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEDYRDLIVAYQNGAPVRLQDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           +          S S  
Sbjct: 284 ANTQQAIVLNIQRQPGVNVIETADSIREMLPELIKSLPKSVDVKILTDRTTTIRASVSDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYLFLRNAAATIIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 78/234 (33%), Gaps = 10/234 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V      +    L     + Q           +         +  + E++K     + 
Sbjct: 266 QDVATIEQGAENNKLAAWANTQQAIVLNIQRQPGVNVIETADSIREMLPELIKSLPKSVD 325

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                  T  +   +S        + + I+ + M+IY+++R      +     + L +  
Sbjct: 326 VKILTDRTTTIRASVSDVQFE---LLLAIALVVMVIYLFLR-NAAATIIPSIAVPLSLVG 381

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T       G   N   + A+    G+ V+D +VV + +    +         D   K   
Sbjct: 382 TFAAMYFLGFSINNLTLMALTIATGFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAG 438

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
           E     +  + +    ++P+   G   G +   FA+ +A  I+++A  S+ +  
Sbjct: 439 EIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 45.8 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 6/200 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +E V +    I   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 830  EAVEAVTQAEKTIQLPADIMTRFQGSTLAFQAALGGTLWLIIAAIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPVTILSTLPTAGVGALLALMLTGNELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGAGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRA 828
               ++F    I L       
Sbjct: 1008 QILTLFTTPVIYLLFDKLAR 1027


>gi|220916516|ref|YP_002491820.1| protein-export membrane protein SecD [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219954370|gb|ACL64754.1| protein-export membrane protein SecD [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 613

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 219/465 (47%), Gaps = 26/465 (5%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
              ++     +R+ + K G+    ++    N+I +     +  E   + +    Q     
Sbjct: 162 EKAVKQAEKVIRNRVDKWGVTEPDIKTKANNQIQVQLPGFKDPEKAKELLGRTAQLEFKI 221

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
            + +      V     +        ++    +                    E      G
Sbjct: 222 ADDENPALDPVRGQLPQCQGDRQGLSLPLPETGCW---------------TVEPVELPNG 266

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
             R    +         + +      +                G   ++ +    YL+  
Sbjct: 267 GTRAATMVAANTRTELEKVIAEKLNPLLD-PQKNAVGIGEGQVGQGPIKTTYYRTYLLRA 325

Query: 246 KVEISGIHLNGATANFDP----KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           K E++G ++  A    D     +  +PVV       GAR   ++T +N+ + +A VLD +
Sbjct: 326 KTELTGDYIADAAVAVDQSDTLQRGRPVVSFKMSPEGARLMEKLTTENMRRRMATVLDDK 385

Query: 302 VLTAPVINQ-----AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           V TAP I          +  +  +     + A  +A +L+AG+LP  + I EER VGA L
Sbjct: 386 VETAPYIQGRISSNGQITLGSGRNQQDMFDEANGIALVLKAGALPAPVTITEERTVGATL 445

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G + + KGT A + GL L+V+FM+V Y   GLVAD ++ LN +L LA++S++G TLTLP 
Sbjct: 446 GPELVRKGTLAALVGLALVVVFMVVYYRGTGLVADVALALNGLLVLAVMSMIGTTLTLPG 505

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG VL +G+AVD+N+L+NERIREE R  ++V  S+ +G+ R + TI DS++T L+A VV
Sbjct: 506 IAGFVLTLGMAVDANVLINERIREEMRAGRNVRQSVQLGYDRVFWTIVDSHVTTLVAGVV 565

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           LF +G G +RGFA+T+ + ++ SMFT+I + R +M +  R+   +
Sbjct: 566 LFQYGSGPIRGFAVTLIIGLVASMFTSIVVTRVIMEYFTRHDTAR 610



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 89/230 (38%), Gaps = 4/230 (1%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L+         Q        +     +    +        +  K   +    TI    
Sbjct: 380 TVLDDKVETAPYIQGRISSNGQITLGSGRNQQDMFDEANGIALVLKAGALPAPVTITEER 439

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  +  EL+RKG +  ++    +++++ + ++    L A   L L+    L   ++ G
Sbjct: 440 TVGATLGPELVRKGTLAALVGLALVVVFMVVYYR-GTGLVADVALALNGLLVLAVMSMIG 498

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A  +  +G +V+  V++ +R+R+ M+      + R  +    +      V +
Sbjct: 499 TTLTLPGIAGFVLTLGMAVDANVLINERIREEMRA---GRNVRQSVQLGYDRVFWTIVDS 555

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   ++ + +  +G   I  FA+ +  G+V +  +SI +   I+ +   
Sbjct: 556 HVTTLVAGVVLFQYGSGPIRGFAVTLIIGLVASMFTSIVVTRVIMEYFTR 605



 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 20/250 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLP-QSMLDR---------FPSAMPKNR--ISLGLD 49
           R+  W V L   +  + +   +P++   +   D+          P   P  +  ++LGLD
Sbjct: 3   RSWYWRVALVVAVAILSIYQLVPSWFYFKLPPDQRNTEAYDTSVPGWAPDAKHHLNLGLD 62

Query: 50  LRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE 109
           L+GG  L + VD D  V   +   +DE+  FLK + +     + +     +  A +   E
Sbjct: 63  LQGGILLSMGVDVDRAVKTKVARRADEIGEFLKGKNVAFTGTQVVGGGAQVEVAAANPGE 122

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
                +                +          +      + +      A++Q+ ++IR 
Sbjct: 123 VKDAVLGSSGYAEEMYSPGGAPE--------GAVRFAFKDSVLRDFREKAVKQAEKVIRN 174

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
           R+D+ G++E  I+   +++I +QLPG +DP + ++LLG TA++ F      N     + G
Sbjct: 175 RVDKWGVTEPDIKTKANNQIQVQLPGFKDPEKAKELLGRTAQLEFKIADDENPALDPVRG 234

Query: 230 VRFLRDSDGN 239
                  D  
Sbjct: 235 QLPQCQGDRQ 244


>gi|146293881|ref|YP_001184305.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
 gi|145565571|gb|ABP76506.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
          Length = 1046

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/580 (9%), Positives = 157/580 (27%), Gaps = 38/580 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGFVS-----FTKLSVREMPDVESPVVT---------ISTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        + R   ++IT+ F            V   +  
Sbjct: 55  SASIMESQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D K  ++          V    +    I    + +    R   D+  +     
Sbjct: 115 AQRRLPEDAKDPIVSKDNGSGEPSVYVNLSSS--IMDRTQLTDYAQRVLEDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     T   ++                         N  
Sbjct: 173 SISISGGLYKVMYVKLRPEQMAGRNVTVTDITNALRKE-------------------NVE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V      ++  T             +          +     ++           
Sbjct: 214 TPGGQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++         +V+  +      S + 
Sbjct: 274 KSDGIVNLSLGIITQSDANPLVVAQEVHKEVDRVQNFLPEGTSLVVDFDSTVFIDRSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV++VL++ +   +  L+   ++ +++I      ++ G ++ L ++  ++
Sbjct: 334 VYNTLFVTGALVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LAIGLVVDDAIVVVENIFHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        F++ + +S++ S   A+++   +   +++     +     +   F   + +
Sbjct: 454 GMVGLLFTEFSVMLAVSVMFSSLIALTLTPVLSSKLLKANVKPNRFNRWVDSGFARMEKV 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
               +        I+ L  +  I                 
Sbjct: 514 YRAAVSRAIQFRLIAPLVILACIGGSAWLMQQVPSQLAPQ 553



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 89/284 (31%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           K    L V          ++   +           F  +  
Sbjct: 219 VRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGI 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IV 671
             + L            V + V K++  +        + +V    +  + R        +
Sbjct: 279 VNLSLGIITQSDANPLVVAQEVHKEVDRVQNFLPEGTSLVVDFDSTVFIDRSINEVYNTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +        +FG   NL  + A++  IG
Sbjct: 339 FVTGALVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     V T+    +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIEKGEEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVMLAVSVMFSSLIALTLTPVLSSKLLKANVKPNR 498



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 45/134 (33%), Gaps = 12/134 (8%)

Query: 699  TLILDITKTLGFFA-LFGIEFNLTAV-----AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L++  T  +G F    G+      +       ++ LIG    + +++ +      +L  
Sbjct: 878  PLVVMFTVPMGVFGGFLGLLITSQGINIYSQIGMIMLIGMVTKNGILIVEFAN---QLRD 934

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                    I  +    L   + T+    +  +P+      G     +    + FG+  A 
Sbjct: 935  RGFELDKAIIDASTRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFAT 994

Query: 810  SSSIFIAAPILLFI 823
              ++F+   +   I
Sbjct: 995  FVTLFVIPAMYRLI 1008


>gi|71906099|ref|YP_283686.1| acriflavin resistance protein [Dechloromonas aromatica RCB]
 gi|71845720|gb|AAZ45216.1| Acriflavin resistance protein [Dechloromonas aromatica RCB]
          Length = 1027

 Score =  153 bits (386), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/543 (12%), Positives = 158/543 (29%), Gaps = 48/543 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + M+   G++           + +F                    + +   
Sbjct: 9   RNPTPAILFFVMLTLAGVMA-----FKAMKIQQFMDIDLPT-------------VTVTAS 50

Query: 62  EDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++       +   + L+        ++     +T+ F   +  +   D V  
Sbjct: 51  LPGAAPAQMETEVARKIENSVATLQGIKHIYTKVQDGTAIVTVEFRLEKPTQEAIDDVRD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  + + L  D K  ++         I+       ++   A   S  +       +  +
Sbjct: 111 AVSRIRADLPGDLKDPVISKVNLSGAPILTYTVASSRMDDEA--LSWFVDNTVTKALLSA 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      +  ++  E DP++L  L  T A +S           G    V  +  S 
Sbjct: 169 RGVGAVSRVGGVTREIRIELDPAKLLALRATAADISRQLRQIQQEASGGRSDVGGIEQSV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V+   E+  + +                         R        ++   +   
Sbjct: 229 RTIATVKSADELGAMDIVL--------------------SDGRHLRVDQVASVIDTVGEQ 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L    +     +           +        L+A    I +       V   + 
Sbjct: 269 RTTALLNGKPVVGFEITRSKGAGEVEVADNVKRSLDKLQAEHPDIAITE-AFNFVDPVIE 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +           A L ++V+++ +  G+   VA  ++ L+ I T A + L+G TL + ++
Sbjct: 328 NYDGSMKLLIEGALLAVLVVWLFLRDGRATFVAAAALPLSAIPTFAAMYLMGFTLNVVTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + L +G+ VD  I+  E I    R  +S + +           +  +  T +   +  
Sbjct: 388 LSMSLVVGILVDDAIVEIENIMRHLRMGKSPYQAAMEAADEIGLAVIATTFTLIAVFLPT 447

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G     F  T  +++  S+  A  +   M  ++++           L R+   
Sbjct: 448 AFMSGVAGKFFVQFGWTAAIAVFFSLVVARMLTPMMAAYLLKPVSHTEATPGWLKRYEGW 507

Query: 535 PDC 537
              
Sbjct: 508 AAW 510



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 76/252 (30%), Gaps = 6/252 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + + +   R + +  V S ++++     +              + +    V     ++
Sbjct: 241 GAMDIVLSDGRHLRVDQVASVIDTVGEQRTTALLNGKPVVGFEITRSKGAGEVEVADNVK 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               K+    P   I         +         + +  + +A+L+             A
Sbjct: 301 RSLDKLQAEHPDIAITEAFNFVDPVIENYDGSMKLLIEGALLAVLVVWLFLRDGRATFVA 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L    T     L G   N+  + ++  ++G  V+D +V  + +   M+      S
Sbjct: 361 AAALPLSAIPTFAAMYLMGFTLNVVTLLSMSLVVGILVDDAIVEIENI---MRHLRMGKS 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
                 ++ +E     + T+       LP A   G        F    A  +  +   + 
Sbjct: 418 PYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGVAGKFFVQFGWTAAIAVFFSLVVAR 477

Query: 814 FIAAPILLFIYD 825
            +   +  ++  
Sbjct: 478 MLTPMMAAYLLK 489



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 69/177 (38%), Gaps = 6/177 (3%)

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
             T +   +   EL     + +    + + I + + FK +   +  +  LIL +       
Sbjct: 832  QTTVGDAEAMGELFTSFALAMATGVLCIYIVLVLLFKDFVQPVTILAALILSVPGAFLAL 891

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             +     ++ ++  ++ L+G +  + +++ D +   +      +     +  +  +    
Sbjct: 892  FITQKAVSMPSMIGLIMLMGIATKNSILLIDYV--VLARREHGLDRWSALLDACRKRARP 949

Query: 772  SVYTSMAAFISVLPMAV-WGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             V T++A    ++P+A+  G         +I +  G++ +   S+ +   +  ++ D
Sbjct: 950  IVMTTVAMGAGMMPIALGLGVDPSFRAPMSIVVIGGLITSTFLSLLVIPVVFTYVDD 1006


>gi|269956463|ref|YP_003326252.1| protein-export membrane protein SecF [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305144|gb|ACZ30694.1| protein-export membrane protein SecF [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 363

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 69/316 (21%), Positives = 142/316 (44%), Gaps = 12/316 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L     +   +  R     +++  ++ SI +L   GL+ GIDF+GG ++ V
Sbjct: 4   FSFAAWGNDLYTGRRSYPIVAQRKRWFTVAVALAVASIAILGIKGLSLGIDFRGGTEISV 63

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                         + ++  GD       G     ++      + VA    L +    I 
Sbjct: 64  ENVSTTTQGPAIDAVRAVVPGDEPRVASLGANALRIQTTTLTPEEVADVTALLVEAYGID 123

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                    +   VGP   + +  + + GV++  +A   ++ + F+ W  ++ AI +++ 
Sbjct: 124 AATD----ISVSTVGPTWGQGVSLRALWGVVVFVLAAAAFMAVYFRAWRMSVAAIVSMLF 179

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRDL 760
           D+  + G +AL G E   + +   LT++G+S+ DK+VV+D++R+N +  L     ++ + 
Sbjct: 180 DLLLSAGVYALIGWEVTPSTIIGFLTILGFSLYDKMVVFDKVRENAEGVLDQRRTTYGER 239

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFI 815
            + ++N+TL RS+ TS+ A + V  +        G   +   ++ +  GI V A+SS+F+
Sbjct: 240 ANLAVNQTLVRSINTSVVALLPVAGILFVGALLLGAGTLRDLSLSLFVGIAVGAASSLFL 299

Query: 816 AAPILLFIYDWRAKNA 831
           A P+ + + +   K  
Sbjct: 300 ATPLDVALREREPKIK 315


>gi|291283317|ref|YP_003500135.1| Multidrug resistance protein mdtC [Escherichia coli O55:H7 str.
           CB9615]
 gi|226237428|dbj|BAH46950.1| multidrug efflux system, subunit C [Escherichia coli O55:H7]
 gi|290763190|gb|ADD57151.1| Multidrug resistance protein mdtC [Escherichia coli O55:H7 str.
           CB9615]
 gi|320657499|gb|EFX25297.1| multidrug efflux system subunit MdtC [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 1025

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 166/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRAAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++      ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMTCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 69/216 (31%), Gaps = 6/216 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             FA+ ++  I ++   S+ +      ++       
Sbjct: 461 REFAVTLSVAIGISLLVSLTLTPMTCGWMLKASKPR 496


>gi|188584313|ref|YP_001927758.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium populi BJ001]
 gi|179347811|gb|ACB83223.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium populi BJ001]
          Length = 1043

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/651 (12%), Positives = 196/651 (30%), Gaps = 35/651 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   G L  L     +  + +FP  +P      G               
Sbjct: 9   RPRLALVIALIITIAGGLALL-----RIPVAQFPDIVPPQVSVTG---------TYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +     + +      +     +  +++SF      +     V   +Q 
Sbjct: 55  AEVVEASVAQPLEAQIIGVDRMIYMKSTSANDGSYSLSVSFDLGTDPDINTVSVNNRVQS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   L    +    ++ +    +      +  +   I   +D+I  +    
Sbjct: 115 ALSQLPSEVQLQGLKVQKKSSAILLFAVLYSETGAQDPLFITNYAIINVLDEISRTAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     R+   +    D  RL  L    + +       +        G   + D    Q 
Sbjct: 175 QANLFARMNYSMRIWFDTQRLTSLKLAPSDVVDAIRAQSVQAPVGRIGAPPITDEQQIQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ +  +S                +    +                 +           
Sbjct: 235 NVQTQGRLS-------------TPAQFGAIVLRTNSDGSVVRIRDVAQVELSAQSFDSES 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T          L          +V   +      + S 
Sbjct: 282 RLDGRPGVPVAIYLVPGANAVRTATAVKATLEKLSTRFPAGLRYVVVHDSTTFVKDTISE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV+IV+F+ +   +  ++   ++ +++I T A+L +LG +    S+  +V
Sbjct: 342 VLRTLAEAFVLVVIVVFLFLGNLRATVIPAVAVPVSLIGTFAVLLVLGYSANTVSLLAMV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     ++   S   +  +  ++  + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEHPELSPADATKLAMTQITAPIIAITLVLLSVFVPIAF 461

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R FA+T+  +++IS   A+++  A+    +R    +   +  +        
Sbjct: 462 IPGVSGTLFRQFAVTISAAMMISAINALTLSPALCGVFLRPTGARRGIMGRVLGGIDWVR 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLF--THGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +R       +S++  +     +F  +     G   +       ++ +  D + V
Sbjct: 522 DRYASGVRRLVRVSALSLMMVLLFAGGIFGLSRVTPVGFLPEEDQGAFFVSVQLPDGASV 581

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                     +   ++  G    L  + +   D  A+     +V +     
Sbjct: 582 ARTSTVAAEVERLLKDMPGVNQVLSVIGFSLLDGAAEPNAAFLVAQLKPFA 632



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 72/219 (32%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G           +                        +E    G   +++ 
Sbjct: 816  NNFRAVSVNGSPAPGISSGTALAAMEQISDRTLPTGYGYEWTGTAYQEQQASGQTWIVLG 875

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +  + ++++    +     L G+  +L +   ++ LI  +
Sbjct: 876  LAFLFAYLFLVALYESWTIPIPVLLSVVVGAFGSYLAVKLAGLSLDLYSEIGLVVLIALA 935

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  +   +     +  R+   +   +     + TS+A  + ++P+ +  G+ 
Sbjct: 936  AKNGILIVEFAKDQREA---GVPIREAAIRGAEQRFRAVMMTSIAFILGLVPLVIATGAA 992

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                      +  G++ A+S  IF+   + + +   R +
Sbjct: 993  QISRRDVGTAVFGGMIAASSIGIFLVPMLYVTVQSLRER 1031



 Score = 40.8 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 55/136 (40%), Gaps = 10/136 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRK 746
               +     + + +  T     + G   N  ++ A++  IG  V+D +VV    +R+ +
Sbjct: 364 LRATVIPAVAVPVSLIGTFAVLLVLGYSANTVSLLAMVLAIGIVVDDAIVVVENVERVME 423

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
                   +S  D    ++ +     +  ++      +P+A   G        FA+ ++ 
Sbjct: 424 E----HPELSPADATKLAMTQITAPIIAITLVLLSVFVPIAFIPGVSGTLFRQFAVTISA 479

Query: 804 GIVVAASSSIFIAAPI 819
            ++++A +++ ++  +
Sbjct: 480 AMMISAINALTLSPAL 495


>gi|157828088|ref|YP_001494330.1| acriflavin resistance protein D [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|157800569|gb|ABV75822.1| acriflavin resistance protein D [Rickettsia rickettsii str. 'Sheila
           Smith']
          Length = 1008

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/625 (12%), Positives = 172/625 (27%), Gaps = 53/625 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L  +I  +G +     F  +  +   P                   + +E  
Sbjct: 9   KRPVLATVLNLVIVALGAM-----FFTKLQIRGTPDISVPI-------------INVEAH 50

Query: 62  EDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +++       ++    +K            ++ ITLSF  S   E   + V  
Sbjct: 51  YAGADALYMEQAITTRIEKALKTVKNLDYITSQSSTGESSITLSFLLSTDIEVALNDVRA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  +      D K   +          +      DQ     +E +  +       +   
Sbjct: 111 KISDITYMFPQDMKAPSVTKLDADSFPSLFISIESDQYSD--LELTKIVEDNLQTPLDKL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           ES  Q          +  E D  +L Q   +  ++       N          +      
Sbjct: 169 ESVGQSQIYGGREYIIRIEPDSKKLYQHKISLLEIESAIKEQNKDYPAGTIKTKSNNFIV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    E                      +I                 I       
Sbjct: 229 TLAGSLSTPEEFG--------------------NIILKVQNGGIIKLRDIAKISLTSPDE 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              ++ +              ++          +          
Sbjct: 269 DIIFRYNGKSSIALGLIKASKANVIDLSHEVTKALERIKESMPKGISMGIAYDAATPVKA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V ++ +   K  L+   +I +++I T +++   G ++ + ++
Sbjct: 329 SIYAVFQTIFEALILVVLVTYLFLASAKITLIPFVTIPVSLIGTFSVMYAFGFSINIFTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I++ E I   N        +  +        I    IT     + +
Sbjct: 389 LAMILAIGLVVDDAIVMLENIFRYNEMGHKPMEAAMLASQEIGFAIIAMTITLAAVFLPV 448

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPL 528
            F  G   +    FA T+   +L S F A+++   M   ++        K +   +    
Sbjct: 449 GFIEGFIGKLFIEFAWTLAFCVLFSGFVALTLTPMMSSRMVTKHNTDLPKFLVKFNDILQ 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    + + F   + + + I+  F +  I   FT  +    +  G +Q+ +     
Sbjct: 509 FIQNKYIYYLKLTFENQKKFVIIIASSFIVLIISFKFTQKIFVPQEDDGFLQVSLKGPEG 568

Query: 589 VDLSVVRSNLESLQIGDISFQNFDG 613
            +L      ++  +    ++++  G
Sbjct: 569 SNLESSTKVVKEAEKILANYKDILG 593



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 82/245 (33%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I L V     + L  +     +    DI F+        L  ++    + +  +  + 
Sbjct: 241 GNIILKVQNGGIIKLRDIAKISLTSPDEDIIFRYNGKSSIALGLIKASKANVIDLSHEVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              ++I E +P               +  I      +  + I +++            L 
Sbjct: 301 KALERIKESMPKGISMGIAYDAATPVKASIYAVFQTIFEALILVVLVTYLFLASAKITLI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T      FG   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 361 PFVTIPVSLIGTFSVMYAFGFSINIFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGH 417

Query: 756 SFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +    T  A F+ V  +  + G +   FA  +AF ++ +   +
Sbjct: 418 KPMEAAMLASQEIGFAIIAMTITLAAVFLPVGFIEGFIGKLFIEFAWTLAFCVLFSGFVA 477

Query: 813 IFIAA 817
           + +  
Sbjct: 478 LTLTP 482



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 90/271 (33%), Gaps = 11/271 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              + L F       I     I +    N  + L  + +  E + +   S  N        
Sbjct: 744  YDVILQFNQKDRKDISDFSKILIRAKNNNMLPLESIANITEKISVKSYSHYNNSKSVTIS 803

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              L        A   + ++  K +     +           +         ++  + + I
Sbjct: 804  SDLAPDRKIDDAINEINKIASKLLDPSNTIIEYIGEIKQMREADS----NMLITFVFALI 859

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  +  +   IT  +    L G   N+ +   ++TLIG    + 
Sbjct: 860  FIYLVLAAQFESFTDPLLILLAVPFSITGGVLALWLAGNSLNMYSNIGLITLIGLITKNS 919

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
            +++ +      +L    +  ++ I +S    L   + T++AA +  LP+    G+     
Sbjct: 920  IMIVEFAN---QLRAKGVKVQEAIIESSKLRLRPILMTTLAAVVGALPLVFADGASAAAR 976

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             S    +  G+ +    +IF+   I      
Sbjct: 977  NSIGFVIVGGLSIGTIFTIFVIPVIYHTFKK 1007


>gi|298245392|ref|ZP_06969198.1| protein-export membrane protein SecF [Ktedonobacter racemifer DSM
           44963]
 gi|297552873|gb|EFH86738.1| protein-export membrane protein SecF [Ktedonobacter racemifer DSM
           44963]
          Length = 424

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/238 (23%), Positives = 114/238 (47%), Gaps = 11/238 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +                               + T  +E V++          + ++  
Sbjct: 155 KINDKTAVTADAPVIGNNNQTQAISLLTSNKFQSNTGDIEKVQQAFYNKGIYVQLIDSST 214

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITTLILDITKTLGFF 711
           VG  ++ +     I  V  S++A+L+Y+W  F+     W +   AI  ++ D+   +G F
Sbjct: 215 VGGSVADQTKLYSIFAVAASSLAILLYLWFSFRKVSRPWRYGACAIIAMLHDVLVVVGIF 274

Query: 712 ALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           ++ G    I+ +   + A+LT++G+SV+D +VV+DR+R+NM +  T+ +F  +++ S+ +
Sbjct: 275 SILGHFFNIQIDALFITALLTVVGFSVHDTIVVFDRIRENM-IRRTTETFEQVVNASLVQ 333

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV-IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           TL RS+ TS+    ++L + ++G S  I +F + +  GI     SSIF A+ +L+   
Sbjct: 334 TLARSLNTSLTVLFTLLALTLFGSSTSIHTFTLTLLIGIASGTYSSIFNASMLLVIWE 391


>gi|238792113|ref|ZP_04635749.1| Multidrug resistance protein mdtB [Yersinia intermedia ATCC 29909]
 gi|238728744|gb|EEQ20262.1| Multidrug resistance protein mdtB [Yersinia intermedia ATCC 29909]
          Length = 1052

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 63/542 (11%), Positives = 146/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G+L           +   P                    +     
Sbjct: 19  RPVATTLFMIAILLAGIL-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPNDLPYPPIYSKVNPADPPIMT-LAVTSTAIPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEDYRDLIVAYQNGAPIRLQDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           V          S S  
Sbjct: 284 ANTQQAIVLNIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTTTIRASVSDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIVLVVMVIYLFLRNAAATIIPSVAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  + ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSAEDYRDLIVAYQNGAPIRLQDVATIEQGAENNKLAAWANTQQAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   V              +  EL+    
Sbjct: 293 NIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTTTIRASVSDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I  + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 349 --LAIVLVVMVIYLFLR-NAAATIIPSVAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 82/203 (40%), Gaps = 7/203 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +  V +    I   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 830  EAVNAVTQAEQTIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPVTILSTLPTAGVGALLALMLTGNELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGAGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F   P++  ++D  A+N+
Sbjct: 1008 QVLTLF-TTPVIYLLFDKLARNS 1029


>gi|28493238|ref|NP_787399.1| preprotein translocase subunit SecD [Tropheryma whipplei str.
           Twist]
 gi|28476279|gb|AAO44368.1| preprotein translocase SecD subunit [Tropheryma whipplei str.
           Twist]
          Length = 559

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 110/493 (22%), Positives = 201/493 (40%), Gaps = 24/493 (4%)

Query: 45  SLGLDLRGGSHLVLEVDE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLS 101
            L LDL GG+ +VL       +  +  LQ     +R+ +   GI    +    +  I++S
Sbjct: 43  KLALDLEGGTQIVLRAKSAEKEITSEQLQQAVAIIRNRVDSSGISEAEISVQGSTNISVS 102

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                  + + D++    +     +     K +      +  +   S  +      +A  
Sbjct: 103 IP-GTPSKEVYDRIRSSSKMDMRAVL--LTKPIQHAAMNEGSTHAGSTASAAIGDKNATR 159

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
            S +    R +       T   + S R              R    +            +
Sbjct: 160 GSPKSSEHRKNIPKTPHDTSGMIPSPRPKNGSDMAWITKYWRDRFDSHNCKDNAGDSTPD 219

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA-----NFDPKTHKPVVDISFDE 276
           +          + D  G    +   VE+SG  ++ A A     +F   +    V I+F+ 
Sbjct: 220 NLP------LVVCDQYGTTKYLLGPVEVSGTDISRAVADPVSSHFAGASIGWGVTITFNA 273

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP---SGKAQISGNFTIETAGILAA 333
            G  +F +V+   I           VL   VI        +   QI+GNF   TA  LA+
Sbjct: 274 HGGEKFKDVSNRLISLAAPRNQFAAVLDGVVITAPEVRGVTSNPQITGNFNQTTATALAS 333

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
            L  GSLP+   +    N+ A LGS  +  G  A + G++L+V++ +  Y   GL+   S
Sbjct: 334 QLSFGSLPVSFEVQSSENISATLGSSQLQSGILAGILGMILVVVYSLFQYRLLGLLTVSS 393

Query: 394 IFLNVILTLALLSLLGAT----LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           +  + I+T  +++ L       L+L  +AG+++ IG+  DS I+  ER+++E R+ + + 
Sbjct: 394 LICSAIVTYLVITFLSWQNGYRLSLAGVAGLIVAIGITADSFIVYFERVKDELREGRDIV 453

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++D G+SRA  TI  S+    +A +VLF    G+V+GFA T+GL+ L+ +   +     
Sbjct: 454 RAVDRGWSRALRTICASDAVNFLAAIVLFLVAVGSVKGFAFTLGLTTLVDLLVVVFFTHP 513

Query: 510 MMIFIIRYKKMKS 522
           ++ ++        
Sbjct: 514 VLQYLSHSSFFTR 526



 Score =  108 bits (268), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 79/206 (38%), Gaps = 8/206 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G+    T      +     +     +Q++E +   +    ++ GI+  I+  I ++
Sbjct: 317 PQITGNFNQTTATALASQLSFGSLPVSFEVQSSENISATLGSSQLQSGILAGILGMILVV 376

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAVAAVLTLIGYSVNDK 737
           +Y   +++    L  +++LI     T           G   +L  VA ++  IG + +  
Sbjct: 377 VYSLFQYRLL-GLLTVSSLICSAIVTYLVITFLSWQNGYRLSLAGVAGLIVAIGITADSF 435

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +V ++R++  ++           +D+  +  L     +    F++ + + +     +  F
Sbjct: 436 IVYFERVKDELRE---GRDIVRAVDRGWSRALRTICASDAVNFLAAIVLFLVAVGSVKGF 492

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFI 823
           A  +    +V     +F   P+L ++
Sbjct: 493 AFTLGLTTLVDLLVVVFFTHPVLQYL 518


>gi|165932788|ref|YP_001649577.1| acriflavin resistance plasma membrane protein [Rickettsia
           rickettsii str. Iowa]
 gi|165907875|gb|ABY72171.1| acriflavin resistance plasma membrane protein [Rickettsia
           rickettsii str. Iowa]
          Length = 1008

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/625 (12%), Positives = 172/625 (27%), Gaps = 53/625 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L  +I  +G +     F  +  +   P                   + +E  
Sbjct: 9   KRPVLATVLNLVIVALGAM-----FFTKLQIRGTPDISVPI-------------INVEAH 50

Query: 62  EDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +++       ++    +K            ++ ITLSF  S   E   + V  
Sbjct: 51  YAGADALYMEQAITTRIEKALKTVKNLDYITSQSSTGESSITLSFLLSTDIEVALNDVRA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  +      D K   +          +      DQ     +E +  +       +   
Sbjct: 111 KISDITYMFPQDMKAPSVTKLDADSFPSLFISIESDQYSD--LELTKIVEDNLQTPLDKL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           ES  Q          +  E D  +L Q   +  ++       N          +      
Sbjct: 169 ESVGQSQIYGGREYIIRIEPDSKKLYQHKISLLEIESAIKEQNKDYPAGTIKTKSNNFIV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    E                      +I                 I       
Sbjct: 229 TLAGSLSTPEEFG--------------------NIILKVQNGGIIKLRDIAKISLTSPDE 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              ++ +              ++          +          
Sbjct: 269 DIIFRYNGKSSIALGLIKASKANVIDLSHEVTKALERIKESMPKGISMGIAYDAATPVKA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V ++ +   K  L+   +I +++I T +++   G ++ + ++
Sbjct: 329 SIYAVFQTIFEALILVVLVTYLFLASAKITLIPFVTIPVSLIGTFSVMYAFGFSINIFTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I++ E I   N        +  +        I    IT     + +
Sbjct: 389 LAMILAIGLVVDDAIVMLENIFRYNEMGHKPMEAAMLASQEIGFAIIAMTITLAAVFLPV 448

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPL 528
            F  G   +    FA T+   +L S F A+++   M   ++        K +   +    
Sbjct: 449 GFIEGFIGKLFIEFAWTLAFCVLFSGFVALTLTPMMSSRMVTKHNTDLPKFLVKFNDILQ 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    + + F   + + + I+  F +  I   FT  +    +  G +Q+ +     
Sbjct: 509 FIQNKYIYYLKLTFENQKKFVIIIASSFIVLIISFKFTQKIFVPQEDDGFLQVSLKGPEG 568

Query: 589 VDLSVVRSNLESLQIGDISFQNFDG 613
            +L      ++  +    ++++  G
Sbjct: 569 SNLESSTKVVKEAEKILANYKDILG 593



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 82/245 (33%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I L V     + L  +     +    DI F+        L  ++    + +  +  + 
Sbjct: 241 GNIILKVQNGGIIKLRDIAKISLTSPDEDIIFRYNGKSSIALGLIKASKANVIDLSHEVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              ++I E +P               +  I      +  + I +++            L 
Sbjct: 301 KALERIKESMPKGISMGIAYDAATPVKASIYAVFQTIFEALILVVLVTYLFLASAKITLI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T      FG   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 361 PFVTIPVSLIGTFSVMYAFGFSINIFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGH 417

Query: 756 SFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +    T  A F+ V  +  + G +   FA  +AF ++ +   +
Sbjct: 418 KPMEAAMLASQEIGFAIIAMTITLAAVFLPVGFIEGFIGKLFIEFAWTLAFCVLFSGFVA 477

Query: 813 IFIAA 817
           + +  
Sbjct: 478 LTLTP 482



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 90/271 (33%), Gaps = 11/271 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              + L F       I     I +    N  + L  + +  E + +   S  N        
Sbjct: 744  YDVILQFNQKDRKDISDFSKILIRAKNNNMLPLESIANITEKISVKSYSHYNNSKSVTIS 803

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              L        A   + ++  K +     +           +         ++  + + I
Sbjct: 804  SDLAPDRKIDDAINEINKIAAKLLDPSNTIIEYIGEIKQMREADS----NMLITFVFALI 859

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  +  +   IT  +    L G   N+ +   ++TLIG    + 
Sbjct: 860  FIYLVLAAQFESFTDPLLILLAVPFSITGGVLALWLAGNSLNMYSNIGLITLIGLITKNS 919

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
            +++ +      +L    +  ++ I +S    L   + T++AA +  LP+    G+     
Sbjct: 920  IMIVEFAN---QLRAKGVKVQEAIIESSKLRLRPILMTTLAAVVGALPLVFADGASAAAR 976

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             S    +  G+ +    +IF+   I      
Sbjct: 977  NSIGFVIVGGLSIGTIFTIFVIPVIYHTFKK 1007


>gi|186682177|ref|YP_001865373.1| acriflavin resistance protein [Nostoc punctiforme PCC 73102]
 gi|186464629|gb|ACC80430.1| acriflavin resistance protein [Nostoc punctiforme PCC 73102]
          Length = 1041

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/686 (11%), Positives = 188/686 (27%), Gaps = 42/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   I   GL+  L   +       +P                     L   
Sbjct: 9   RRPVMTTLVMMGILIFGLMSYLLLPISALPNVEYPFIS--------------VSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       I+L F  SR  E+ A  V   +  
Sbjct: 55  TPETMASSVAAPLERQFTEIAGLNSFNSTSSTGSTNISLQFDFSRRVEDAAKDVQAAISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L                +  ++      +      +++  E+       I +    
Sbjct: 115 AAGQLPAGMPHPPTYRKVNPSVSPVLYLYMYSETQPISTVDEYAEV--TVGQPISMINGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q     +    +  + DP  L        ++       N +         +   +    
Sbjct: 173 AQVQVFGQQQYAVRVQLDPRELASRGIGLTQVKTAIQQGNVNLPTGSLSGTYKSYTIQAN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + D                    +   V +            V   N+          
Sbjct: 233 GQLTDAA--------SYRQLIVTYKNGATVRLQDLGQIIDSEQNVKVSNL-------YSD 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           R +T           +   +    ++    L   LR          +          S +
Sbjct: 278 RKVTNRHSVVLAVQPQPGANTVNIVDAIQELLPTLREQVPKSIEMGIMYDRSQTIRASVN 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +   LV++V+F+ +      L+   ++ + +I T A++ L G +L   S+  +
Sbjct: 338 DVKFTLVLSVCLVVLVIFLFLRDITATLIPSLALPVAIIGTFAVMYLSGFSLDNLSLMAL 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I+V E I       +S   +   G      TI    ++ +   + + F 
Sbjct: 398 TLSVGFVVDDAIVVLENIVRYREMGESPLNAALKGSREISFTILSMTLSLVAVFIPIMFM 457

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
            G        FA+T+ ++IL+S F ++S+   +           R  ++  +        
Sbjct: 458 SGIIGKLFHEFAVTIAVAILVSGFVSLSLTPMLCSRFLSSSHQQRPNRLYRVSERAFDLL 517

Query: 532 FLIPDCIAIQFMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               D      ++ R   +  S IL  +     +         +  G +       + + 
Sbjct: 518 LRGYDWTLKPVLKYRLMTLIGSGILLVMTVYLFVIVPKGFIPTEDTGQLMANTKGAQDIS 577

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              +R + + +        N +   + +         +  +  +    + +         
Sbjct: 578 FDDMRHHQQKVVDLIRQDPNIEAVDSIVGASGPNASVNSGRITIRLKPRSQRKLSADEII 637

Query: 651 IQNTEIVGPKISRELIRKGIVGVIIS 676
            + T  +   +  +   +    + I 
Sbjct: 638 QELTPKLRRVVGVKTFLRSPPAIPIG 663



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 78/242 (32%), Gaps = 8/242 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V       +     N++   +               V+ Q           + E++   
Sbjct: 253 TVRLQDLGQIIDSEQNVKVSNLYSDRKVTNRHSVVLAVQPQPGANTVNIVDAIQELLPTL 312

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             ++     +         I   +       V+   + +L+           L     L 
Sbjct: 313 REQVPKSIEMGIMYDRSQTIRASVNDVKFTLVLSVCLVVLVIFLFLRDITATLIPSLALP 372

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + I  T     L G   +  ++ A+   +G+ V+D +VV + +   ++      S  +  
Sbjct: 373 VAIIGTFAVMYLSGFSLDNLSLMALTLSVGFVVDDAIVVLENI---VRYREMGESPLNAA 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAA 817
            K   E +  ++ +   + ++V    ++   +I      FA+ +A  I+V+   S+ +  
Sbjct: 430 LKGSRE-ISFTILSMTLSLVAVFIPIMFMSGIIGKLFHEFAVTIAVAILVSGFVSLSLTP 488

Query: 818 PI 819
            +
Sbjct: 489 ML 490



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 89/252 (35%), Gaps = 9/252 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +     + V LS + +  +++    ++                    S A   + +   +
Sbjct: 778  VQSSTGKLVPLSAIANITQNVGPLTVTHVAQLPSATISFDTLAGTSLSQATDAIKQAASE 837

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             +   +  S   + +      +      G++ ++   +  LI   +   +   +  ++ L
Sbjct: 838  VLPSTITTSFQGSAQTFQQSFNDL----GVLLLVSILVIYLILGILYEDFIHPITILSGL 893

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   L    +F ++ NL +   ++ L+G    + +++ D   +  +      +  D 
Sbjct: 894  PSAGFGALLTLLIFQVDLNLYSFIGIILLVGIVKKNGIMLVDFAIEAQRKE--GKNSFDT 951

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I  +        + T+MAA I  LP+A+    G        I +  G++ +   ++++  
Sbjct: 952  IYAACLIRFRPIMMTTMAALIGTLPIALGTGVGSEARRPLGIAIVGGLLFSQILTLYLTP 1011

Query: 818  PILLFIYDWRAK 829
               +++   R K
Sbjct: 1012 VFYIYMEALRKK 1023


>gi|28199287|ref|NP_779601.1| acriflavin resistance protein D [Xylella fastidiosa Temecula1]
 gi|28057393|gb|AAO29250.1| acriflavin resistance protein D [Xylella fastidiosa Temecula1]
          Length = 1077

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 67/553 (12%), Positives = 159/553 (28%), Gaps = 40/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G+L        +  +   P     + +                 
Sbjct: 15  RRPIATSLLMFGVLLLGIL-----GYKKLPMSALPEVDAPSLV---------VTTQYPGA 60

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + ITL F+  +  +  A  V   +  
Sbjct: 61  NAKTMAALVTTPLEHQLGQISGLDMMSSDSSAGLSTITLQFSTHKNLDIAAQDVQAAIHQ 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +++   +        E +         ++       
Sbjct: 121 AT--LPSTLPHQPIYNRVNPADAAIIT-LKLTSDTLPLRELNTYADAILAQRLSQISGVG 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N +        +    S G   
Sbjct: 178 VVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRNTLTQANVNAPKGSLNGKNQSYSIGTND 237

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D  +                      D                 N+   +       
Sbjct: 238 QLKDASQ--------------------YRDTIIHYQNGHPVRLSEVANVVDGVENDQISA 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A          +   +   T+E    +   LRA         V          S   
Sbjct: 278 WANAKPAVLLEIRRQPGANIIKTVEQIRAILPQLRAVLPTDVHLDVFSDRTETIRASVHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +  GLV+ V+F+ +      L+   ++ L++  T ++++  G +L   S+  +V
Sbjct: 338 VKFTLLLTIGLVVAVIFVFLRRLWATLIPSVAVPLSLAGTFSVMAFNGMSLDNLSLMALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   TI    I+ +   + L    
Sbjct: 398 VATGFVVDDAIVMIENIVRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMP 457

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA  +  +++ISM  ++++   M  ++++   +   D         +    
Sbjct: 458 GVTGRLFNEFAWVLSTAVVISMLVSLTLTPMMCAYLLKPDTLPEGDSPTQITKITLWTRT 517

Query: 539 AIQFMRARFWGVG 551
              + R   W + 
Sbjct: 518 VALYERTLDWVLM 530



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 90/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  ++  +      +      +   +    +        V L+ +     
Sbjct: 236 NDQLKDASQYRDTIIHYQNGHPVRLSEVANVVDGVENDQISAWANAKPAVLLEIRRQPGA 295

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I  +  +I++
Sbjct: 296 NIIKTVEQIRAILPQLRAVLPTDVHLDVFSDRTETIRASVHEVKFTLLLTIGLVVAVIFV 355

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   L     + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 356 FLRRLW-ATLIPSVAVPLSLAGTFSVMAFNGMSLDNLSLMALVVATGFVVDDAIVMIENI 414

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPM 801
              ++      S R+  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 415 ---VRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMPGVTGRLFNEFAWVL 471

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 472 STAVVISMLVSLTLTP 487



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 91/247 (36%), Gaps = 11/247 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V   R + LS +     +     IS Q           L      S A   + +   +
Sbjct: 814  MTVGTGRIIPLSALADAKVTNAPRVISHQQQLPSVTISFNLAQGYSLSHAVKAIEQARTQ 873

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                    +      +       ++    +  ++ S + + I + + ++ +   L  I+T
Sbjct: 874  LQIPAQVRAQFIGKAVEFTSSQSDI----VWLLLASIVVIYIVLGVLYESYIHPLTIIST 929

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    L G+  ++ ++  ++ LIG    + +++ D     ++  +T  S  D
Sbjct: 930  LPSAGVGALLALMLCGLSLSVDSIVGIVLLIGIVKKNAIMMIDF---TIEARSTGSSAHD 986

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+ AA +  LP+A+    G  +     I +  G++++   +++  
Sbjct: 987  AIRRACLLRFRPIIMTTAAALLGALPLALSDGIGSELRRPLGITIVGGLLLSQLITLYTT 1046

Query: 817  APILLFI 823
              I LF 
Sbjct: 1047 PVIYLFF 1053


>gi|313893254|ref|ZP_07826829.1| putative ATP synthase F0, A subunit [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313442150|gb|EFR60567.1| putative ATP synthase F0, A subunit [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 1060

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/667 (11%), Positives = 181/667 (27%), Gaps = 34/667 (5%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +GL+  +        + R+P   P              +          VN  +    
Sbjct: 20  TLVGLISMM-----NLPIARYPQISPPTVR---------VNTAYTGATAQVVNDTVASVI 65

Query: 75  DELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           +     ++       S     +  +T+ F      +         +Q   ++L  + +  
Sbjct: 66  ETQIVGVQDMDYMTSSSSSNGSYSLTVQFNQGTDADMDTVNTQNRVQAALAQLPAEVQAV 125

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            + TT       ++   N       +           +D I   +              +
Sbjct: 126 GVTTTKSSGDMAMVFSLNSPDGTYDSTFLKNYATNYMMDAIKAIKGVGSVQEFGS-DYAM 184

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP++++ L  T ++++      N        G          QY ++ +  +    
Sbjct: 185 RIWLDPAKMQNLGVTISEVTAAIKGQNLQAAAGTVGQNPTNGEQAFQYPIKIEGRL---- 240

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                      T +   +I+      +         I                 +     
Sbjct: 241 ----------VTPEQFGNIAIKSSNGKVLHLKDVARIQIGAKGYDFIAKSAHKEVAGFAI 290

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
           S +   +   TI     +         P     V   N      S    + T      LV
Sbjct: 291 SLQNDANALETIANVKKVLDEQSKSFPPDMQYNVVVDNTKFVSASIKEVEHTFVEALLLV 350

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           LIV+++ +   +  ++   ++ ++++ T     LL  ++   ++  +VL IGL VD  I+
Sbjct: 351 LIVVYVFLQSWRSTIIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIV 410

Query: 434 VNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           V E +  E          +           +       +   V + F GG      + FA
Sbjct: 411 VVEAVEYELKYNGLPPKEAAIKAMENVQGPVIGIAFVLVAVFVPVAFMGGMTGILYKQFA 470

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +T+ +S++IS   A+ +  A+   +++    K  +     +       +           
Sbjct: 471 LTIAVSVVISAIVALVLTPALCATMLKPHTPKEREDWVHRQLNKFNAGLERFSNWYGIQL 530

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
             +S   S+  I LL   G    +            +    +  V     +     ++  
Sbjct: 531 ARLSHRLSLTVIALLIFAGGTGLVFHFLPTSFVPEEDSGYYMIAVNEPPGATSERTMATL 590

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                         +P D      V  +    +      S+                +  
Sbjct: 591 EKIASFLEGKNDPEKPKDEQLFQEVFTVAGFDLLGGGQKSSAGVIFATMSDWKYRTTQAT 650

Query: 670 IVGVIIS 676
            +  ++ 
Sbjct: 651 SINAMVG 657



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  +  + + +  T G F L     N   + A++  IG  V+D +VV + +    
Sbjct: 360 SWRSTIIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIVVVEAV--EY 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +L    +  ++   K++    G  +  +       +P+A  GG        FA+ +A  +
Sbjct: 418 ELKYNGLPPKEAAIKAMENVQGPVIGIAFVLVAVFVPVAFMGGMTGILYKQFALTIAVSV 477

Query: 806 VVAASSSIFIAAPI 819
           V++A  ++ +   +
Sbjct: 478 VISAIVALVLTPAL 491



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 65/167 (38%), Gaps = 12/167 (7%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF------NL 720
            + I+ + +  + + + +   ++ W      + ++   +        L           ++
Sbjct: 881  QTIMILGLGLVFVFLILAALYESWKVPFAVLFSVPSGMIGASLVPFLLNFTGRYSLANDI 940

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 +LTL+G +  + +++ +  +  +++    ++  D   ++    L   + TS A  
Sbjct: 941  YMQIGLLTLVGLAAKNAILIIEYAK--IRVDERGMNVVDAAIEAAKIRLRPILMTSFAFI 998

Query: 781  ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            + VLP+AV    G     S  I +  G+  A    IFI   + + I 
Sbjct: 999  LGVLPLAVSTGAGSGARTSMGITVVAGMTTATLFGIFIIPMLFIIIE 1045


>gi|194431502|ref|ZP_03063794.1| multidrug resistance protein MdtC [Shigella dysenteriae 1012]
 gi|194420327|gb|EDX36404.1| multidrug resistance protein MdtC [Shigella dysenteriae 1012]
          Length = 1025

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVETILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 92/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST+  +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVLGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG--- 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG       
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSKLQQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|260598564|ref|YP_003211135.1| multidrug efflux system subunit MdtC [Cronobacter turicensis z3032]
 gi|260217741|emb|CBA32148.1| Multidrug resistance protein mdtC [Cronobacter turicensis z3032]
          Length = 1029

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSIAVTLCGVL-----GFRLLPVAPLPQVDFPVIM---------ISASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSTSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTFSQGELYDYASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVALNPQALFNQGVSLDTVRSAISNANVRRPQGAIEDTQRRWQLQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                       +                 +   +  V +  +
Sbjct: 235 LKTAAD--------------------YEPLIIHYNNGAAVHLRDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LR          + +        S +  
Sbjct: 275 TNAKPAILLMIRKLPEANIIETVDRIRAALPELRETIPAAIDMQIAQDRSPTIRASLAEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + + AI  GLV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQSLAISVGLVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENISRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
             G   R FA+T+ ++I IS+  ++++   M  ++++ K  +           L+     
Sbjct: 455 LPGRLFREFAVTLSVAIGISLVVSLTLTPMMCGWLLKTKPREETRRRVGVNRLLLALQGG 514

Query: 539 -----AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                      AR  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YARSLGWVLNHARLVGLVLLATIALNVWLYVSIPKTFFPEQDTGRLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 63/162 (38%), Gaps = 7/162 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +  + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVGLVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       + + E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---SRHLEAGMKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              G +   FA+ ++  I ++   S+ +   +  ++   + +
Sbjct: 454 GLPGRLFREFAVTLSVAIGISLVVSLTLTPMMCGWLLKTKPR 495



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 92/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +     V+ +   + + + +T +   S+++ +     ++ +E +   ++ ++ +   
Sbjct: 803  TIAFNLPTGVSLSEASDAITRTMTSLGVPSSVRGSFAGTAQVFQETMNSQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L     F   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALEAFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     +S RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  LMVDFALEAQRNGQ--LSARDAIFQACLLRFRPIMMTTLAALFGALPLMIASGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R +  R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFTR 1017


>gi|188586551|ref|YP_001918096.1| acriflavin resistance protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351238|gb|ACB85508.1| acriflavin resistance protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 1034

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/682 (11%), Positives = 197/682 (28%), Gaps = 48/682 (7%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
            ++  IG+++     + ++ +D +P       +              E    + V   + 
Sbjct: 14  VLMVVIGVILIGFIAVSETPIDLYPDIDLPVVM---------IATEYEGAGPEEVENMVT 64

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
            + ++  S +      + + R  +++I + F      +  A +V   +  V  +L  +  
Sbjct: 65  SHLEDALSTVDGIDTIMSTSRPGESEIIIRFDWGTDMDFAALEVREMVDMVMEELPDEIG 124

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  ++      + ++ +    D       E +  ++  RI+++   E       +  +  
Sbjct: 125 RPSVIQLDPDMLPVIQAGIEGDLEDQEMTELAENVLASRIERL---EGVALVEVAGGVER 181

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           ++  + DP +L     +  ++                              V       G
Sbjct: 182 EIQIQVDPYKLSAYEISLEELGELIYAS--------------------NADVSGGEIQDG 221

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
                     + +T + +  +   E G           +            +        
Sbjct: 222 RREYLIEVEGEFETVEEIEQLIVTESGGIPIRLKEIAEVKDTTERQRPITKINGDSTVSL 281

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
               +++ +              L           V          S S         A 
Sbjct: 282 SVRKESEANTVDVANVVQEEFDELEEELPEDIRFDVAMDQSEFIEASISTLVNMGVSGAI 341

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           + ++VL++ +   +  ++   +I ++VI T  L+     TL   ++ G+ LGIG+ VDS 
Sbjct: 342 VAMVVLWLFLGNIRSTIIIGIAIPISVIATFNLIYFQEYTLNFITLGGLALGIGMMVDSA 401

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGF 488
           I++ E I  +  +      +   G     S I  + IT++IA + + F            
Sbjct: 402 IVILENIFRKREEGLPPVDAAIEGSKEVTSAIIAATITSVIAFLPIVFVEGVASIVFAPL 461

Query: 489 AITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLSRFFLIPDCIA 539
           A T+  +++ S+  A  ++  M                K  K  D             I 
Sbjct: 462 AWTVTFALVSSLIVASGVIPLMTTKFIGTDVNLSERSNKITKIFDQKLQVMTEKYEYIIE 521

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                 +  G    ++  +    +             G I + +     + +    + + 
Sbjct: 522 WGLNSRKLIGTIFVVVLFVTLSLIPLVGFEFLPPLDTGEISVNIETPVGMPIEQTEAVIG 581

Query: 600 S----LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L         F       +           +  +++  ++       +  I+   
Sbjct: 582 EYEEMLMEITEVETVFTSIGGGGLLDDEVSNVGSIEVELVDESERDKETTEVVEDIREEY 641

Query: 656 IVGPKISRELIRKGIVGVIISA 677
              P +S  +  K +    +  
Sbjct: 642 PRIPGVSVTVTEKDLAAGAVGL 663



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 92/266 (34%), Gaps = 11/266 (4%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            L  H   + +       +       V L  +          DI  Q+     N    ++ 
Sbjct: 757  LMEHPEEWDLATIDSFFIQNPQGNLVPLEEIADTSVGEAPRDIERQDQLRSGNVTGLIEG 816

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
            +   S     + + + KK                  +   EL     + + +S I + + 
Sbjct: 817  RDLGS-VMDDIQDELAKKDLPTGYNIEYMGIYRDTVEAFEELT----LALGLSVILVYMV 871

Query: 684  IWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +  +F    +    + T+ L +   +    + G  F+L A   V+ L G  VN+ +V+ D
Sbjct: 872  MASQFGSLLYPFIIMFTIPLTMLGVVSSLLITGRTFSLVAFIGVIMLAGIVVNNGIVMVD 931

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
             +  N+       S    + ++  + L   + T+    I ++P+A+    G   I   A 
Sbjct: 932  YI--NLLYKERGYSRHQAVVEAGKKRLRPILMTTSTTIIGMVPLALGIGEGAEAIAPMAT 989

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYD 825
                G++V+   ++ I   I   + D
Sbjct: 990  VTIGGLLVSTLLTLIIIPVIYTMMDD 1015



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 73/220 (33%), Gaps = 4/220 (1%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           +  N D   +  VR + +         V E   +   E+               I   + 
Sbjct: 271 TKINGDSTVSLSVRKESEANTVDVANVVQEEFDELEEELPEDIRFDVAMDQSEFIEASIS 330

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               +GV  + +AM++           +     + + +  T           N   +  +
Sbjct: 331 TLVNMGVSGAIVAMVVLWLFLGNIRSTIIIGIAIPISVIATFNLIYFQEYTLNFITLGGL 390

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
              IG  V+  +V+ + +    +     +   D   +   E     +  ++ + I+ LP+
Sbjct: 391 ALGIGMMVDSAIVILENI---FRKREEGLPPVDAAIEGSKEVTSAIIAATITSVIAFLPI 447

Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               G     FA P+A+ +  A  SS+ +A+ ++  +   
Sbjct: 448 VFVEGVASIVFA-PLAWTVTFALVSSLIVASGVIPLMTTK 486


>gi|110598064|ref|ZP_01386343.1| Hydrophobe/amphiphile efflux-1 HAE1 [Chlorobium ferrooxidans DSM
           13031]
 gi|110340323|gb|EAT58817.1| Hydrophobe/amphiphile efflux-1 HAE1 [Chlorobium ferrooxidans DSM
           13031]
          Length = 1069

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 62/521 (11%), Positives = 139/521 (26%), Gaps = 43/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +GL+      + Q  + RFP   P               + +    
Sbjct: 8   RPVLATVISIILVILGLV-----GINQLSITRFPDIAPP-------------SVSVSASY 49

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  +        +E  + ++       +     +  I++ F      +  A  V  
Sbjct: 50  PGASAETVGRSVAPPLEEAINGVENMTYMTSTSANDGSLSISVFFKQGTNPDQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S+L  +  +  + T   +   I+L   +        I          +D +   
Sbjct: 110 RVAQAASRLPAEVNQIGVSTVKRQNSQIMLITLSSSSKAYDQIFLQNYAKINIVDDLARV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q      +   +     P ++     T  +++      N       FG        
Sbjct: 170 PGVGQVSVYGNMDYAMRIWLRPQQMAAYKVTPQEVAAAIQSQNLEAAPGSFGENSSEAMQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                             +                 I       
Sbjct: 230 YVMKYKGKNA----------------YPGDYEDMVIRANPDGSLLRLGDIARIEFGAYRY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 + N        +               +   +      
Sbjct: 274 TVNTKANGQPGVVMAVYQAPGSNANKVETGLRKVLEKAAGALPAGVSYSIPFSSKKVVDE 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T      LV  V+F+ +   +  ++   ++ + ++ T   ++L G ++ + ++
Sbjct: 334 SIVQVEHTLVEAFLLVFFVVFLFLQDLRSTIIPAIAVPVAIVGTFFFMNLFGFSINVLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIA 473
            G+VL IG+ VD  I+V E +  +  +          S     + A  TI     +  + 
Sbjct: 394 FGLVLAIGIVVDDAIVVVEAVHAKMEQKNYPAKVATVSAMREITTAIVTITLVMASVFLP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              L    G   R FA T+ ++ILIS   A+++  A+    
Sbjct: 454 VGFLQGSTGVFYRQFAFTLAIAILISAVNALTLSPALCALF 494



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 70/246 (28%), Gaps = 10/246 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V +S + +         +   N     +    ++       A   V E+ K  +    
Sbjct: 802  SMVPVSSLITLKRVYGTESVDHFNMFNAVSVNAMVKPGFSTGQAIKAVEELSKTALPAGY 861

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                   +          L     + ++       +   +   +   L  + ++   +  
Sbjct: 862  TYDWKGQSREELESTGGLL----FIFLLSVVFVYFLLAALYESYLLPLAVMFSIPTGLLG 917

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                  L G+E N+    AV+ LIG    + +++ +     ++      S      +   
Sbjct: 918  VFIGIKLAGVENNIYVQVAVIMLIGLLAKNAILIVEFA---LQRRVAGSSLSAAAIEGAK 974

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + TS+A    +LP+    G               G+ V     I +   + +  
Sbjct: 975  ARLRPILMTSLAFVAGLLPLLFVTGPAAQGNHSIGAAAIGGMFVGMVLGILVVPVLFVTF 1034

Query: 824  YDWRAK 829
               + +
Sbjct: 1035 QHLQER 1040



 Score = 38.1 bits (86), Expect = 6.4,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 7/122 (5%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +     + + I  T  F  LFG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 359 DLRSTIIPAIAVPVAIVGTFFFMNLFGFSINVLTLFGLVLAIGIVVDDAIVVVEAVH--A 416

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           K+   +   +     ++ E     V  ++      LP+    GS       FA  +A  I
Sbjct: 417 KMEQKNYPAKVATVSAMREITTAIVTITLVMASVFLPVGFLQGSTGVFYRQFAFTLA--I 474

Query: 806 VV 807
            +
Sbjct: 475 AI 476



 Score = 38.1 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 62/207 (29%), Gaps = 3/207 (1%)

Query: 313  PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
             S  A +   F+   A      L   +LP       +     +L S         +    
Sbjct: 830  VSVNAMVKPGFSTGQAIKAVEELSKTALPAGYTYDWKGQSREELESTGGLLFIFLLSVVF 889

Query: 373  VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
            V  +L  +       L   FSI   ++     + L G    +     +++ IGL   + I
Sbjct: 890  VYFLLAALYESYLLPLAVMFSIPTGLLGVFIGIKLAGVENNIYVQVAVIMLIGLLAKNAI 949

Query: 433  LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV-LFFFGG--GAVRGFA 489
            L+ E   +      S+  +   G       I  +++  +   +  LF  G          
Sbjct: 950  LIVEFALQRRVAGSSLSAAAIEGAKARLRPILMTSLAFVAGLLPLLFVTGPAAQGNHSIG 1009

Query: 490  ITMGLSILISMFTAISIVRAMMIFIIR 516
                  + + M   I +V  + +    
Sbjct: 1010 AAAIGGMFVGMVLGILVVPVLFVTFQH 1036


>gi|312130468|ref|YP_003997808.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Leadbetterella byssophila DSM 17132]
 gi|311907014|gb|ADQ17455.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Leadbetterella byssophila DSM 17132]
          Length = 1044

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 73/680 (10%), Positives = 174/680 (25%), Gaps = 46/680 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++      ++  +I   G +  L     +  + RFP   P               + + V
Sbjct: 6   LKRPVLASVISLLILISGAISIL-----RLPVSRFPDIAPP-------------SVSISV 47

Query: 61  DEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKV 115
                    +        +E  + ++       S     +  I++ F      +  A  V
Sbjct: 48  SYPGGNAETVAKSVLLPLEEAVNGVENMTYIKSSANNSGSGTISVFFKPGTDPDIAAVNV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID--QVISHAIEQSMEIIRQRIDQ 173
              +    +++  +  +  +     +  SI+      D                   I +
Sbjct: 108 QNSISRAVNQIPAEVNEAGISVVKRQSGSIMTINVFADKTDGPYDETFLQAYARINLIRE 167

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I   E   Q          +    +P +L        ++       N       FG    
Sbjct: 168 ILRVEGVAQATLLGGRDYSMRIWLNPEKLAVYGLIPQEVISAIREQNFEAAPGKFGEGSY 227

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
              +                             + +             +      +   
Sbjct: 228 EVFEAVLK----------------HKGRFSDPEEYMNIPIRTNQDGSVLYLKDVARVEFG 271

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            +       + A        S     +     +    +               +      
Sbjct: 272 SSNYGSDNKVNARPGITINVSQTNNSNAKVIDQKVREVLEKTAKVFPEGIKYEISYSVRD 331

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S      T      LV   +F+ +   +  L+   +I ++++ T   L ++G ++ 
Sbjct: 332 QIDQSIKQVIQTIFEAFLLVFATVFIFLQNYRATLIPAIAIPVSLVGTFFFLDMMGFSIN 391

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKN----QSVFCSLDMGFSRAYSTIFDSNIT 469
           + ++  +VL IG+ VD  I+V E +  +         S   S     S+A  +I      
Sbjct: 392 VLTMFALVLSIGIVVDDAIVVVEAVYHKMHSEKLKVYSATVSAMNEISKALISITLVMAA 451

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPL 528
             +    L    G   R FA T+  ++ IS   A+++   +    +    +         
Sbjct: 452 VFLPVGFLEGPVGLFYRQFAYTLIAAVFISALNALTLSPVLCTLLLKPEDENPRSGSTFE 511

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                +       F       + +    +      L   G  + + +             
Sbjct: 512 RMKDRLFTNFNKSFEAFTERYLRVVKWTTANKKISLTALGAVFVLTYFLFTTTPKSFIPT 571

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            D S +  +L       ++       +  L+  ++    SV       ++    +    +
Sbjct: 572 EDDSFLTYSLAMPSGASLARTTEAITEADLIIQKHPAVASVNSISGYNILDASSSPSFGM 631

Query: 649 STIQNTEIVGPKISRELIRK 668
             I    I   +   ++I  
Sbjct: 632 GYINLKSIKERENINDIIED 651



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 61/166 (36%), Gaps = 9/166 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +I +   + +Y  +      +      + ++   I     F  L G+E N+     ++ L
Sbjct: 876  LIFALSLLFVYFLLAAQYESYILPWAVLLSIPTGILGVFVFVRLAGLENNIYVQVGLIML 935

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G    + +++ +     ++      S  D    +    L   + TS+A    ++P+ + 
Sbjct: 936  LGLLAKNAILIVE---YGIQSRKMGYSPLDAAITAARLRLRPIIMTSLAFVAGLVPLMLS 992

Query: 790  GGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G       S +I  A G++      +FI   + L       + A+
Sbjct: 993  KGPSAIGNKSVSISAAGGMIFGILLGLFIIPVLYLIFQSLHDRYAK 1038



 Score = 45.5 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 27/264 (10%), Positives = 98/264 (37%), Gaps = 13/264 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + + +  N+   +  ++              +        + +     ++     + + 
Sbjct: 246 YMNIPIRTNQDGSVLYLKDVARVEFGSSNYGSDNKVNARPGITINVSQTNNSNAKVIDQK 305

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           V++ + +   +        +   +  ++   I++ I  +  + + +   ++I  + +   
Sbjct: 306 VREVLEKTAKVFPEGIKYEISYSVRDQIDQSIKQVIQTIFEAFLLVFATVFIFLQNYRAT 365

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + +  T  F  + G   N+  + A++  IG  V+D +VV + +    K+++ 
Sbjct: 366 LIPAIAIPVSLVGTFFFLDMMGFSINVLTMFALVLSIGIVVDDAIVVVEAV--YHKMHSE 423

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVI--GSFAIPMAFGIVVA 808
            +        ++NE     +  S+   ++ + +    + G   +    FA  +   + ++
Sbjct: 424 KLKVYSATVSAMNEISKALI--SITLVMAAVFLPVGFLEGPVGLFYRQFAYTLIAAVFIS 481

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
           A +++ ++  +   +     +N R
Sbjct: 482 ALNALTLSPVLCTLLLKPEDENPR 505


>gi|158425314|ref|YP_001526606.1| Acr family transporter [Azorhizobium caulinodans ORS 571]
 gi|158332203|dbj|BAF89688.1| Acr family transport protein [Azorhizobium caulinodans ORS 571]
          Length = 1045

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/647 (11%), Positives = 177/647 (27%), Gaps = 44/647 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ ++  +GL+           + + P+      +           +     
Sbjct: 11  RKPIPSLVLFVVLTALGLV-----HFRSLPVTQMPNIDIPIVM---------VTISQPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +        S+    +  T+ F      +   +     +  
Sbjct: 57  APSELETQVTKKVENAIAGVAGVKHITSSISDGTSVTTVEFHLETMVDRAVNDSRDAVTK 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L    ++  +     + + IV    +         E S  +       +       
Sbjct: 117 IRSELPQSIEEPQVQRVDIEGLPIVTYAVSAPS--MSTEEVSWFVDDTIARAVQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL  L  T A++S      N    G    +     +     
Sbjct: 175 QVKREGGVNREIRVSLDPERLTALGITAAEVSRQLRATNVDVSGGRGQLGTQEQTIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  ++    +                         R         +    A      
Sbjct: 235 GAANMEQLGNTRIAL--------------------SNGRYVRLSDLGTVTDGAAEQRVFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           S     +  G     L A    + +  ++   V         
Sbjct: 275 RLDGKPVVAFGVYRAKGFSDVVVYDRVGEELKRLEARYPAVTITEIDT-TVRYTKSDYQS 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  ++   +I L+++ T  ++  LG +L   S+  I 
Sbjct: 334 AMHTLIEGAILAVIVVFLFLRDWRATIITATAIPLSILPTFWIMDTLGFSLNGVSLLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R+ +S + +           +  + +T       + F G
Sbjct: 394 LVTGILVDDAIVEIENIVRHMREGKSPYRAAIEAADEIGLAVVATTLTIAAVFAPVSFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +++L S+  A  I   +  + +R    +    +           +
Sbjct: 454 GIAGQYFKQFGLTVAIAVLFSLLVARLITPLLAAYFLRDTGHRE---SEDGFIMRRYVTL 510

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSN 597
               +R RF  + +       SI L       +   +      L V       +   +  
Sbjct: 511 LGWSVRHRFATILMGFAVFAGSIYLATLLPSGFLPANDISRSLLSVELPPGSTIEETQEV 570

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            + +     +                      A       V   +  
Sbjct: 571 ADRITAIMAAQPEVASVYATAGGGGQGGFAMTAGEVRKAQVVINLKP 617



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 13/199 (6%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            + + LE     +T     +T++ T+         LI   I+ VI+              
Sbjct: 303 EELKRLEARYPAVTITEIDTTVRYTKSDYQSAMHTLIEGAILAVIVVF-------LFLRD 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +   T + L I  T       G   N  ++ A+  + G  V+D +V  + +   ++
Sbjct: 356 WRATIITATAIPLSILPTFWIMDTLGFSLNGVSLLAITLVTGILVDDAIVEIENI---VR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                 S      ++ +E     V T++       P++  G   G     F + +A  ++
Sbjct: 413 HMREGKSPYRAAIEAADEIGLAVVATTLTIAAVFAPVSFMGGIAGQYFKQFGLTVAIAVL 472

Query: 807 VAASSSIFIAAPILLFIYD 825
            +   +  I   +  +   
Sbjct: 473 FSLLVARLITPLLAAYFLR 491



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 75/219 (34%), Gaps = 7/219 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   + ++     +      LE V            +   E    +I  E+     + +
Sbjct: 797  DRARRIAVEADLVGTAPLGNALEKVFALPAARDLPPGVTLKETGDAEIMGEVFSGFALAM 856

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +L  + + F      +  + +L L +        L G   +L  V   L L+G 
Sbjct: 857  GAGIMLVLAVLVLLFADLLQPITILISLPLSVGGAFIALLLTGNSVSLPVVIGFLMLMGI 916

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D   +         S  D + +S  +     V T++A    ++P A+    
Sbjct: 917  VTKNAILLVDFAIE---AMKHGESRFDALMESGRKRAQPIVMTTIAMAAGMVPSAIGLGE 973

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            GGS     AI +  G++ +   S+     +   + D   
Sbjct: 974  GGSFRAPMAIAVIGGLIASTVLSLVFVPAVFTVMDDLSR 1012


>gi|160888976|ref|ZP_02069979.1| hypothetical protein BACUNI_01396 [Bacteroides uniformis ATCC 8492]
 gi|270293900|ref|ZP_06200102.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|317479263|ref|ZP_07938398.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bacteroides
           sp. 4_1_36]
 gi|156861443|gb|EDO54874.1| hypothetical protein BACUNI_01396 [Bacteroides uniformis ATCC 8492]
 gi|270275367|gb|EFA21227.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|316904551|gb|EFV26370.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bacteroides
           sp. 4_1_36]
          Length = 1036

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/646 (10%), Positives = 177/646 (27%), Gaps = 44/646 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D +       +          +     P +
Sbjct: 135 PSQLMTICLTSSDPKFDEIYLSNFATINVLDLLRRIPGVGRVSNIGSRYYAMQIWALPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVKGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSSAKQFEDIVVRANANGSIIRLRDVARVSLEASSYSTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               ++       + A         +          S      T      LV++V+F+ +
Sbjct: 301 MEVAKSVKAAMEEISANFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVVLVVFLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE- 440
              +  ++   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATVIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENVEHL 420

Query: 441 ENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFFG--GGAVRGFAITMGLSIL 497
              +  S + +     +  A + I  S +   +   V F  G  G   R F IT+ +S+L
Sbjct: 421 METEKLSPYEATKKAMNGLASALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVL 480

Query: 498 ISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
           +S   A+++   M   I        +    + I+             I       R    
Sbjct: 481 LSTVVALTLSPVMCSLILKPDSGKKKNIVFRKINEWLNLGNHKYVAVINRVIRNPRRLMS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              ++     I           ++ +G  ++ +       L   R  +    +  +    
Sbjct: 541 AFGLVLVAIFIIHRLVPTSFLPVEDQGYFKIELELPEGATLERTR-VVTDRAVQYLEKNP 599

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +      +     + G + A++ +  ++K                +
Sbjct: 600 YVAYVQNVTGSSPRVGSNQARSELTVILKPWEERKGISIDKIMENV 645



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVVICGLENDIYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDKGGDLIQSAIHAAQLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            + A    I +     + +Y  +AK
Sbjct: 1005 IFAIVFGIVLVPFFFVLVYKTKAK 1028



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 92/255 (36%), Gaps = 10/255 (3%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K    + V AN    +  +R                         L            V 
Sbjct: 245 KQFEDIVVRANANGSIIRLRDVARVSLEASSYSTESGINGENAAVLGIYMLPGANAMEVA 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF-KWY 691
           + VK  + EI        +  +   ++  +          +  + I +++ +++    W 
Sbjct: 305 KSVKAAMEEISANFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVVLVVFLSLQSWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  I  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +     + 
Sbjct: 365 ATVIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENV--EHLME 422

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVA 808
           T  +S  +   K++N      + TS+      +P+  + G  G +   F I +A  ++++
Sbjct: 423 TEKLSPYEATKKAMNGLASALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVLLS 482

Query: 809 ASSSIFIAAPILLFI 823
              ++   +P++  +
Sbjct: 483 TVVAL-TLSPVMCSL 496


>gi|167032591|ref|YP_001667822.1| acriflavin resistance protein [Pseudomonas putida GB-1]
 gi|166859079|gb|ABY97486.1| acriflavin resistance protein [Pseudomonas putida GB-1]
          Length = 1026

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 70/628 (11%), Positives = 178/628 (28%), Gaps = 49/628 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ S+I  +GL       + +  + ++P             L   S + +  +
Sbjct: 9   RRPVLALVVSSLIILMGLFA-----MGKLPIRQYP-------------LLESSTITISTE 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  S ++       S +Q ++ ITL    +R       +   
Sbjct: 51  YPGASAELMQGFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  +L       ++  +     ++       D +     E S  + R    Q    
Sbjct: 111 KVNQVRYRLPEKAYDPVVELSAGDSTAVAYVGFASDSL--SIPELSDYLSRVVEPQFSGI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +        + +    D  ++     T A ++      N          +++    
Sbjct: 169 DGVAKVQSFGGQRLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    +                      ++     G           +    A  
Sbjct: 229 QVDTDLTRVEDF--------------------RELIIRNDGTDLVRLRDVGTVELNAAAT 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +    +E    L   ++    P     +          
Sbjct: 269 QTSATMDGRPAVHLGLFPTPTGNPLVIVEGIRQLLPQIQQTLPPGVHVALAYETARFIDA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V++V+++ +   +  L+A  +I L+++    L+ L G +L L ++
Sbjct: 329 SIHEVLRTLVEAMLIVVLVIWLCLGSLRSVLIAVVAIPLSMLGAAGLMLLFGFSLNLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +     + +S   +  +G       +    +T       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENVHRHIEEGRSPVAAALIGAREIAGPVIAMTLTLAAVYAPI 448

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFF 532
              G   G   R FA+T+  ++++S   A+++   M   +++  +      ++       
Sbjct: 449 GLMGGLTGTLFREFALTLAGAVIVSGIVALTLSPVMSSLLLQPGQQHGAMANMADRLFAG 508

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L      +         +   +   +C             +         + A +    +
Sbjct: 509 LTGAYGRVLAYTLTHRWISGGVALLVCLSLPWLYLLPQRELAPAEDQAAVLTAIKSPQHA 568

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVR 620
            +          D   ++     +  + 
Sbjct: 569 SLEYVEHFALKLDEVMKSIGETTDTWII 596



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 93/270 (34%), Gaps = 8/270 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              +  +        ++    + +       V L  V +   +      S          
Sbjct: 222 QYVLADIQVDTDLTRVEDFRELIIRNDGTDLVRLRDVGTVELNAAATQTSATMDGRPAVH 281

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L       G+ +     +  +  +I + +P            +     I + +  ++ + 
Sbjct: 282 LGLFPTPTGNPLVIVEGIRQLLPQIQQTLPPGVHVALAYETARFIDASIHEVLRTLVEAM 341

Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           + +++ IW+        L A+  + L +    G   LFG   NL  + A++  IG  V+D
Sbjct: 342 LIVVLVIWLCLGSLRSVLIAVVAIPLSMLGAAGLMLLFGFSLNLLTLLAMVLAIGLVVDD 401

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +      S          E  G  +  ++       P+ + G   G++
Sbjct: 402 AIVVVENVH---RHIEEGRSPVAAALIGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTL 458

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              FA+ +A  ++V+   ++   +P++  +
Sbjct: 459 FREFALTLAGAVIVSGIVAL-TLSPVMSSL 487



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 81/247 (32%), Gaps = 10/247 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     + +       +++       FD +    ++    PG S+             
Sbjct: 765  VRAENGSLVPLATVVHLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLTTE 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L    +   + + + + + +  +++     L  + T+ 
Sbjct: 825  LPPGFSHDWQSESRQYVQEGFAL----MWAFLAALVVIYLVLAAQYESLVDPLIILVTVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     N+     ++TLIG      +++ +   +       ++     I
Sbjct: 881  LSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVEFANE--IQVRDNLDRAAAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + T+ A    VLP+      G +      + +  G++V    ++F+   
Sbjct: 939  VRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPT 998

Query: 819  ILLFIYD 825
            I  ++  
Sbjct: 999  IYGWLAR 1005


>gi|34540354|ref|NP_904833.1| AcrB/AcrD/AcrF family protein [Porphyromonas gingivalis W83]
 gi|34396666|gb|AAQ65732.1| AcrB/AcrD/AcrF family protein [Porphyromonas gingivalis W83]
          Length = 1049

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/679 (11%), Positives = 193/679 (28%), Gaps = 49/679 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++++  I   GL       L +  +D +P     N +                 
Sbjct: 9   KKPVTTILIFVAIAIFGLFS-----LSRLSIDLYPKIETSNIM---------VVTSYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +          R+  + ITL F +    E   + V   L  
Sbjct: 55  SASDIENNVTKVLENTLNGVSNLKHITSKSRENASVITLQFNEGVDIEVATNDVRDKLDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V++ L  D  K ++      +I I +      Q     +  S  +  +  + +   +   
Sbjct: 115 VSNFLPDDVNKPMIFKFGTDDIPITMLSV---QAKESTMALSKILEDKVTNALARLDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    DP++L     T   +S      N +    +  +     S   Q 
Sbjct: 172 AVSIMGTVKREIQVYCDPAKLEAYNLTVEAVSQIISAENKNVPAGLIDLGNKTSSIRIQG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D  ++                      I    +G R  +      +    A      
Sbjct: 232 EFADARQL--------------------NQIVVASVGGRNVYLSDVARVEDTHAENEQES 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + ++  +              ++A                  + + + 
Sbjct: 272 YNNNVRGAMIMINKQSGANSVAISRAVRGALPEIQASLPSDVELGTIFDTSDNIVNTINS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T AI   +V++V+   +   +   +   +I ++++ +   L   G TL + S++ + 
Sbjct: 332 LRDTIAITFVIVILVVLFFLGRWRATFIIGLTIPISLVASFIYLMATGNTLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           + IG+ VD  I+V E +     +      +   G +    ++  S +T L   + L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSYPKQAAIHGTNEVGISVIASTLTMLAVFLPLTMIQ 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-------KKMKSIDINPLSRF 531
              G   R     + + ++IS   A+S+   +   +++        ++   + I      
Sbjct: 452 GLTGILFRQLGWIVSIIMIISTVAALSLTPMLCSQLLQRDKKQGRLQQKLFVPIERFLDS 511

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLF--THGLNYGIDFKGGIQLGVLANRPV 589
                   + +         +S      +  ++        +     G IQ+        
Sbjct: 512 VDRAYERFLNWTVRHRTVTIVSAFIIFAASLMMTPLLKTEFFPQSDNGYIQIQAEYPVGT 571

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +++ R+    +              +F V          A       +      +   +
Sbjct: 572 GVNLPRAFALRMIDSWEKEIPEIDRTSFSVGQAEASSMFAAMQDNGTNIITFHIGLTGRN 631

Query: 650 TIQNTEIVGPKISRELIRK 668
             + +        R ++  
Sbjct: 632 ERKRSMNEVADQIRTMLDD 650



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 87/240 (36%), Gaps = 7/240 (2%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L  ++           ++  +V +        A + ++E+ K+KI ++     I     
Sbjct: 793  ELGKIEELYTPPTIERKDRQRVVIVASTAVKGAALSDLVEVAKEKIAQLEIPDGIDYKIS 852

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFG 715
               +  ++        +++  I + I +  +F+        + ++    T  +    +  
Sbjct: 853  GTYEDQQKTFADLSTLMLLIVILVFIVMAAQFESLVDPFVIMFSIPFAFTGVIVGLIITN 912

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              F+  +   ++ L+G  V + +V+ D  R         +     + ++    L   + T
Sbjct: 913  TTFSAMSFIGLIMLMGIVVKNGIVLIDYTR---LCRERGMGILSAVVQAGRSRLRPVLMT 969

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++   + ++PMA+    G  +     + +A+G+ V+   ++ I   +         +  R
Sbjct: 970  TLTTILGMVPMAIGIGEGSELWQPMGVTVAWGLSVSTLITLIIVPTVYAVFASNGMRRQR 1029



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 87/250 (34%), Gaps = 7/250 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V LS V    ++    +    N +     ++  +    +SVA +R +     +I   +P
Sbjct: 251 NVYLSDVARVEDTHAENEQESYNNNVRGAMIMINKQSGANSVAISRAVRGALPEIQASLP 310

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                 T           I      + I+ + +++ +     +W        T+ + +  
Sbjct: 311 SDVELGTIFDTSDNIVNTINSLRDTIAITFVIVILVVLFFLGRWRATFIIGLTIPISLVA 370

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           +  +    G   N+ +++++   IG  V+D +VV + +             +       N
Sbjct: 371 SFIYLMATGNTLNIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSYPKQAAIHGTN 427

Query: 767 ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++      LP+ +     G +       ++  ++++  +++ +   +   +
Sbjct: 428 EVGISVIASTLTMLAVFLPLTMIQGLTGILFRQLGWIVSIIMIISTVAALSLTPMLCSQL 487

Query: 824 YDWRAKNARI 833
                K  R+
Sbjct: 488 LQRDKKQGRL 497


>gi|91977272|ref|YP_569931.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
 gi|91683728|gb|ABE40030.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
          Length = 1042

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/585 (12%), Positives = 162/585 (27%), Gaps = 40/585 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ + I   G+            +   P       I++   L G S   +   
Sbjct: 9   RRPVMTTLITASIIVFGIF-----GYRLLPVSALPKVDFPT-IAVSATLPGASADTMAAS 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   L        S +        S  Q  + IT+ F   R  +  A  V   L  
Sbjct: 63  VAGIIERQL--------STIAGISSMSSSSSQGTSVITIQFDLGRNIDAAALDVQTALTI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKE-ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L ++                ++    +   +   A+  +          +      
Sbjct: 115 AQRRLPIEMTTPPSFRKVNPAEFPVLFVALSSSTLPLSAV--NEYGDITIGQALSQIPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q +        +  + DP        +   +       N+S             +    
Sbjct: 173 AQVVIYGTQKFAVRVQADPVAAAARGLSLEDIRTAVSRANSSTPVGTMSGPKQDIALQAS 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   +                       +                 I   +      
Sbjct: 233 GQMDKAAD--------------------YRHVVVAWRNGSPVKLDEVAKIYDSVENDRLA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    ++    +   LRA   P     V      +   +  
Sbjct: 273 TWFNGERAIVLAIQKQPDANTVAVVDGVRAMLPSLRAQIPPSVEMNVMMDRSVSVRQAVF 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T AI   LV++V+F+ +       +   ++ ++++ T A++ +L  ++   ++  +
Sbjct: 333 DVQETLAIAVVLVVMVIFLFLRKASATFIPALAVPISLLGTFAVMYMLDFSINNMTLLAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I++ E I          F +   G      TI     + +   + +   
Sbjct: 393 TLSVGFVVDDAIVMLENIMRHVEHGMRPFEAALKGAREIGFTIISITFSLIAVFIPVLLM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R F++T+ ++IL+S F ++++   +   +++       +   L  F  +   
Sbjct: 453 GGIVGRVFREFSVTIAVAILVSGFVSLTLTPMLCARMLKAHDPAKKENIILRGFEAMFSA 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
               +  A    +    L  + +   L      Y I  KG     
Sbjct: 513 WLRGYEWALDHVLAHKFLMLLVTFATLGGTIYLYMIVPKGFFPQE 557



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 76/214 (35%), Gaps = 12/214 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI--- 670
                + L  Q         V++ V+  +  +           V    S  + +      
Sbjct: 276 NGERAIVLAIQKQPDANTVAVVDGVRAMLPSLRAQIPPSVEMNVMMDRSVSVRQAVFDVQ 335

Query: 671 --VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             + + +  + M+I++++R K          + + +  T     +     N   + A+  
Sbjct: 336 ETLAIAVVLVVMVIFLFLR-KASATFIPALAVPISLLGTFAVMYMLDFSINNMTLLALTL 394

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G+ V+D +V+ + +   M+     +   +   K   E     +  + +     +P+ +
Sbjct: 395 SVGFVVDDAIVMLENI---MRHVEHGMRPFEAALKGAREIGFTIISITFSLIAVFIPVLL 451

Query: 789 WG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            G   G V   F++ +A  I+V+   S+ +   +
Sbjct: 452 MGGIVGRVFREFSVTIAVAILVSGFVSLTLTPML 485



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 87/242 (35%), Gaps = 6/242 (2%)

Query: 594  VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            + +    +        N  G++  +               V  + + +    +P++ +  
Sbjct: 783  IDAVARMVPSVGPLQINHQGQQPAVTISFNLAEGQSLGAAVDRITQIEQASNLPVTIVTG 842

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
                       L  +G++ +     A +I   +   +   +  I+ L       +    L
Sbjct: 843  FSGTAQVFQESLRGQGVLILAAVFAAYVILGILYESFIHPITIISGLPSAGIGAILTLML 902

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            F +E ++ A+  ++ L+G    + +++ D   +  ++    +S    I ++        +
Sbjct: 903  FNMELSVIAMIGIVMLVGIVKKNAIMMVDFALERRRV---GLSAEHAIREAALLRFRPIM 959

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+ AA    LP+A+    G  +     + +  G+ V+   ++FI   I +++     K 
Sbjct: 960  MTTFAAIFGTLPVALGTGAGAELRQPLGVAVVGGLCVSQLLTLFITPVIYIYLDKIDRKL 1019

Query: 831  AR 832
             R
Sbjct: 1020 KR 1021


>gi|94309458|ref|YP_582668.1| acriflavin resistance protein [Cupriavidus metallidurans CH34]
 gi|93353310|gb|ABF07399.1| multidrug efflux system, subunit B [Cupriavidus metallidurans CH34]
          Length = 1051

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/685 (11%), Positives = 181/685 (26%), Gaps = 49/685 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATALLMVAILLSGLVAFRLLPLSALPEVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F  +   +    +V   +   
Sbjct: 56  PDVMTSSVTAPLERQFGQMPGLKQMSSSSSGGASVITLQFELTLSLDVAEQEVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     + +      + +++   +        +    +  +   +I   +    
Sbjct: 116 SNLLPADLPMPPIYSKVNPADAPIMT-LAMTSDTLPLPKLQDMVDTRVAAKISQIQGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L  L  +   +       N +     F       +      
Sbjct: 175 VTISGGQRPAVRIQANPTALANLGMSIDDLRTAIGNANVNGAKGSFDGPARASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++                           I                +I            
Sbjct: 235 LKSA--------------------DEYKQIIIGYQNGAPIRITDVADIVDAAENSRLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A          +   +    ++    L   LRA                    S    
Sbjct: 275 ANAKPAIVLNIQRQPGANVIEVVDRIKTLMPQLRASLPASVQVQQLTDRTTTIRASVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ + G ++   ++  + +
Sbjct: 335 EFELLLAVALVVMVIFIFLRNLSATIIPGVAVPLSLVGTFGVMYMAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +      +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIMRYIEEGDPPMEAALKGSKQIGFTIISLTFSLVAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ +SILIS   ++++   M   ++R+     +    +         I 
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLRHVPESEMSRFHVVTGRFFDSVIE 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                  +     +    +             G     G+   V+      +        
Sbjct: 515 QYGRALNWVLERQTATLLVAV-----------GTLVLTGLLYVVVPKGFFPVQDTGMIQA 563

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             +    S     G K   V+       +V        V    T I     I N +    
Sbjct: 564 ITEAAQTSSFQSMGRKQEAVQKVILEDPAVDSVSSFIGVDGTNTTINAGRMIINLKPKDE 623

Query: 660 KISRELIRKGIVGVIISAIAMLIYI 684
           + S  ++   +   +     + +Y+
Sbjct: 624 RDSMAVVTDRLQASVQKLGGVALYM 648



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++ + M+I+I++R      +     + L +  T G   + G   N   + A+    G+
Sbjct: 340 LAVALVVMVIFIFLR-NLSATIIPGVAVPLSLVGTFGVMYMAGFSINNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +   M+         +   K   +     +  + +    ++P+   G  
Sbjct: 399 VVDDAIVMIENI---MRYIEEGDPPMEAALKGSKQIGFTIISLTFSLVAVLIPLLFMGDV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FAI +A  I+++A  S+ +  
Sbjct: 456 VGRLFREFAITLAVSILISAVVSLTLTP 483



 Score = 41.6 bits (95), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +  +     +  RD I ++        + T+MAA ++ LPM +    G  + 
Sbjct: 926  IMMIDFALEAEREG--GMKPRDAIFQACLLRFRPILMTTMAALLAALPMMLGTGIGSELR 983

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                I M  G++V+   ++F    I L    
Sbjct: 984  RPLGITMVGGLLVSQVLTLFTTPVIYLAFDR 1014


>gi|33861486|ref|NP_893047.1| preprotein translocase subunit SecD [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33634063|emb|CAE19388.1| preprotein translocase subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 486

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 136/530 (25%), Positives = 228/530 (43%), Gaps = 68/530 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R   WL  +  ++     +  L NF                 + LGLDL+GGS L L++ 
Sbjct: 3   RRQGWLFFIIFLLTF--SIYLLINF----------------PLQLGLDLKGGSQLTLQLI 44

Query: 61  -DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLF 118
            +E       L   +  L   +   G+   +++   ++++ L     +   + +  +   
Sbjct: 45  KEEGKVSKDELDAVNAVLDKRVNNLGVAESNLQTLGRDQLILELPGEQNPLSASRILGKT 104

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                                        +Q          ++     I   I+Q  I +
Sbjct: 105 ALLEFR-----------------------TQKENTNSQLKNLQLQRFKINDLIEQFKIGD 141

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                            ++   +   L+    ++       +N+++ F   V   +    
Sbjct: 142 -----------------KRKEEKSLLLIDNLTEIENDINYSSNNQQLFERLVETKKFISN 184

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP----- 293
               + +K ++SG  L  A    +   +   V +SF   G  +F E+T+   G       
Sbjct: 185 EIANLFNKTDLSGKDLINAGRRQEQTNNNWEVSLSFSNDGGEKFAEITKSIAGTDKLLSI 244

Query: 294 --LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                 +    + +  IN  I  G A ISGNFT E A  L   L+ GSLP+ + IVE   
Sbjct: 245 VLDGESISEASVGSQFINTGITGGSATISGNFTAENARELEVQLKGGSLPLPIEIVETNT 304

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +G  LGS +I K   A + GL+ + +FMI  Y   G V+  S+       LAL SL+  T
Sbjct: 305 IGPLLGSKNIVKSLYAAICGLIFVGIFMIFNYRILGFVSVISLIFYGFFNLALYSLIPVT 364

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAG++L IG+AVD+N+L+ ERIREE     ++  S+D GF RA S+I D +IT  
Sbjct: 365 LTLPGIAGLILSIGMAVDANVLIFERIREELINGNTLIRSIDSGFQRANSSIIDGHITTF 424

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           ++  VLF  G   V+GFA T+GL ++IS+FT+++  + ++ F+  Y+ ++
Sbjct: 425 VSCFVLFLLGTNFVKGFAATLGLGVVISLFTSLNCSKTILRFLTTYQSLR 474



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 42/259 (16%), Positives = 101/259 (38%), Gaps = 4/259 (1%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +  G     +  +      ++   L+   I + S  +               G+  A+  
Sbjct: 222 NDGGEKFAEITKSIAGTDKLLSIVLDGESISEASVGSQFINTGITGGSATISGNFTAENA 281

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
               V+ K   +     I  T  +GP +  + I K +   I   I + I++   ++    
Sbjct: 282 RELEVQLKGGSLPLPIEIVETNTIGPLLGSKNIVKSLYAAICGLIFVGIFMIFNYRIL-G 340

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             ++ +LI      L  ++L  +   L  +A ++  IG +V+  V++++R+R+ +     
Sbjct: 341 FVSVISLIFYGFFNLALYSLIPVTLTLPGIAGLILSIGMAVDANVLIFERIREEL---IN 397

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             +    ID          +   +  F+S   + + G + +  FA  +  G+V++  +S+
Sbjct: 398 GNTLIRSIDSGFQRANSSIIDGHITTFVSCFVLFLLGTNFVKGFAATLGLGVVISLFTSL 457

Query: 814 FIAAPILLFIYDWRAKNAR 832
             +  IL F+  +++   +
Sbjct: 458 NCSKTILRFLTTYQSLRQK 476


>gi|325272585|ref|ZP_08138948.1| acriflavin resistance protein [Pseudomonas sp. TJI-51]
 gi|324102285|gb|EGB99768.1| acriflavin resistance protein [Pseudomonas sp. TJI-51]
          Length = 529

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 56/551 (10%), Positives = 147/551 (26%), Gaps = 38/551 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YKLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +     + +TL F      +    +V   +   
Sbjct: 56  PEVMTSAVTAPLERQFGQMPGLEQMASTSSGGASVLTLRFNLDMNMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + VL+   I        + +  +  +   ++        
Sbjct: 116 SNLLPSDLPAPPVYNKVNPADTPVLT-LAISSKTMPLPKLNDLVDTRVAQKLAQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   L         +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNVDALAANGLNLEDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   ++ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLRSPEEYANLILAYNNGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +           V          +    
Sbjct: 275 ANENHAVLLNIQRQPGANVIEVVDRIKALLPSITDNLPAGLDVSVLTDRTQTIRAAVKDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      L+   ++ L++I T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVMVTFVFLRRASATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D + 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQGRFYRASGAWIDWLI 514

Query: 540 IQFMRARFWGV 550
             +  A  W +
Sbjct: 515 KHYGSALQWVL 525



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 7/160 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I  + M+ ++++R +    L     + L +  T G   L G   N   + A+    G+
Sbjct: 340 IAIVLVVMVTFVFLR-RASATLIPSIAVPLSLIGTFGVMYLAGFSVNNLTLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +      +      K   +     +  + +    ++P+      
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPMQAALKGARQIGFTLISLTFSLIAVLIPLLFMADV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G +   FAI +A  I+++   S+ +   +   +     K
Sbjct: 456 VGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495


>gi|218699331|ref|YP_002406960.1| multidrug efflux system subunit MdtC [Escherichia coli IAI39]
 gi|226700689|sp|B7NQB0|MDTC_ECO7I RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|218369317|emb|CAR17075.1| multidrug efflux system, subunit C [Escherichia coli IAI39]
          Length = 1025

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPSAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRVLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|288927032|ref|ZP_06420925.1| hydrophobe/amphiphile efflux-1 family protein [Prevotella buccae
           D17]
 gi|288336206|gb|EFC74594.1| hydrophobe/amphiphile efflux-1 family protein [Prevotella buccae
           D17]
          Length = 1086

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/701 (11%), Positives = 188/701 (26%), Gaps = 62/701 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN----RISLGLDLRGGSHLVL 58
                 ++        L++     L    ++++P   P       I  G D +       
Sbjct: 9   RPVLSTVISVF-----LVLLGLIGLVSLPIEQYPDIAPPTISVSTIYQGADAQ------- 56

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADK 114
                      L      L   +   E +   + +   +    IT+ F      +  A  
Sbjct: 57  ---------TVLNSVITPLEESINGVENMTYMTSQATNDGMAMITIYFKQGTDADMAAVN 107

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           V   +    + L  +  +  + T+  +  ++++     +     A   +       +  +
Sbjct: 108 VQNRVSQAQALLPAEVTQVGVTTSKRQTSNVIMYSLTTEDGRYDAEFVTNYNNINIVPAL 167

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                             +     P +++Q     + ++      N             +
Sbjct: 168 KRVTGVGNVQDFSTKTYSMRIWLQPDKMKQYGLIPSDITAALAEQN-------IEAAPGK 220

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             + +    E  +   G               +    I   +   +         I    
Sbjct: 221 FGEQSNVSFEYVMRYKGR---------LKTPTEYGNIIISTDNNGQTLHLRDVAKIELGG 271

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                G+          +    A  + N   +              P     +       
Sbjct: 272 LSYSVGQKNNNQPSVMGMVQQIAGSNANDIAKGVKAELEKQAKNFPPGLEYKINYDVTEF 331

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S      T  I   LV  V+++ +   +  L+   ++ +++I T   L + G ++ L
Sbjct: 332 LYASIEEVVMTLVITFILVFFVVYIFLQDFRSTLIPLIAVPVSLIGTFLFLWIFGFSINL 391

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALI 472
            +++ ++L I + VD  I+V E +  +       S   ++D     + + I  + + A +
Sbjct: 392 LTLSALLLAIAIVVDDAIVVVEAVHAKLDLGYKSSKTAAIDAMNEISGAIISITLVMAAV 451

Query: 473 ATVVLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDIN 526
              V F  G      R F +TM ++I+IS   A+++  A+              K + + 
Sbjct: 452 FVPVSFISGTSGTFYREFGVTMAVAIVISAINALTLSPALCAIFLKPHDENGHEKKMSMV 511

Query: 527 PLSRFFLIPDCIAI---------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
                        +           +  R       ++     +  + T       D   
Sbjct: 512 DRFHASFNTAFDKVVGKYKKGVENLIGHRIITAVSVVVGIAVLVFTMATTKTGLVPDEDT 571

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           G+    ++  P         +       ++       +  +V   +  G    Q   +  
Sbjct: 572 GVVFVTISLPPATSQAETQKVTDQVDAMLANNPAVQSRQQIVGYNFIAGQGSDQATFIVK 631

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +K                  G  I R  +       ++  I
Sbjct: 632 LKPFDERPSGFFHKLAGLWEGDGIMRFFVDPMANTSVLGMI 672



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 115/400 (28%), Gaps = 18/400 (4%)

Query: 449  FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
              +        Y  I +     ++A       G GA  G   +M      S+     + +
Sbjct: 662  PMANTSVLGMIYKQISNIKGAQILAFGPPMISGFGATNGLTFSMQDKTGGSLDKFFKVTK 721

Query: 509  AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
              +  +    ++K+   +    +      + +   +       + +         L+   
Sbjct: 722  DYLKALNERPEIKTAMTSYNPSYPQYMVDVDVAKCKQSGISPRVVLSTLQGYYGGLYASN 781

Query: 569  LN-----YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
             N     Y +  +G     +      ++ V   +         S     G  N      +
Sbjct: 782  FNSYGKLYRVMVQGDAASRMRPGDLTNIYVRTPSGMVPVGEYCSLTRVYGPSNVNRFNLF 841

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR----KGIVGVIISAIA 679
               +  A         + I  +  ++        G   S              +I     
Sbjct: 842  TSININATPADGYSSGEAIKAVEEVAAQTLPAGYGYDFSGLTRSEQESSNTTAIIFVLCI 901

Query: 680  MLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + +Y+ +      +   L  I +L   +     F  LFG + ++    A++ LIG    +
Sbjct: 902  VFVYLILSAQYESYLLPLSVILSLPFGLGGAFIFTQLFGHQNDIYMQIALIMLIGLLAKN 961

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---V 793
             +++ +   +      T ++ +          L   + T MA  I +LPM    G     
Sbjct: 962  AILIVEFALE---RRRTGMAIKYSAILGAASRLRPILMTGMAMVIGLLPMMFASGVGKNG 1018

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              +       G+++     IF+   + +     + K   I
Sbjct: 1019 NQTLGAAAVGGMLIGMMIQIFVVPALFVIFEYLQEKFKPI 1058



 Score = 45.8 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 94/260 (36%), Gaps = 13/260 (5%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                 + +  +       +R   +    G              V    Q         +
Sbjct: 242 PTEYGNIIISTDNNGQTLHLRDVAKIELGGLSYSVGQKNNNQPSVMGMVQQIAGSNANDI 301

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KW 690
            + VK ++ +            +   ++  L   I + ++ ++I+ I +   ++I    +
Sbjct: 302 AKGVKAELEKQAKNFPPGLEYKINYDVTEFLYASIEEVVMTLVITFILVFFVVYIFLQDF 361

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L  +  + + +  T  F  +FG   NL  ++A+L  I   V+D +VV + +   + L
Sbjct: 362 RSTLIPLIAVPVSLIGTFLFLWIFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLDL 421

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVL---PMAVWG--GSVIGSFAIPMAFGI 805
                S +     ++NE  G  +  S+   ++ +      + G  G+    F + MA  I
Sbjct: 422 GYK--SSKTAAIDAMNEISGAII--SITLVMAAVFVPVSFISGTSGTFYREFGVTMAVAI 477

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +++ ++  +      
Sbjct: 478 VISAINALTLSPALCAIFLK 497


>gi|296121488|ref|YP_003629266.1| acriflavin resistance protein [Planctomyces limnophilus DSM 3776]
 gi|296013828|gb|ADG67067.1| acriflavin resistance protein [Planctomyces limnophilus DSM 3776]
          Length = 1043

 Score =  153 bits (385), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 59/561 (10%), Positives = 145/561 (25%), Gaps = 38/561 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G L           +   P                     L    
Sbjct: 10  RPVGTTLLTMAIMLAGALS-----YSFLPVAPLPQIDFPTI---------SVSANLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +       ITL F   R  +  +  V   +   
Sbjct: 56  PQTMASAVATPLERQFGRIAGVTEMTSNSSLGNTSITLQFDLDRNIDAASRDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  +   N          + ++   +I        +           ++       Q
Sbjct: 116 RGQLPTNLPNNPSYRKVNPADAPIM-GISIVSNTYTQAQMYDAAATILQQKLSQVRGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            +        +  + +P+ L  L      +                              
Sbjct: 175 IIIGGGSAPAVRVDVNPALLNHLGLGLQDVREVL--------------------GNANAN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +   G       A       +    +   +             +   +       +
Sbjct: 215 RPKGLIDDGQKAWSLDATDQLYQAEEYASLILYQQDGAIVRLRDVARVTDSVENSRSYGI 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   +    ++    +   L A         V          S    
Sbjct: 275 SNGVRSVSLLIFRQPGANIIEIVDKINAMLPQLDAQIPAEMELRVTMDRTATIRASLEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV++V+F  +   +  ++   ++ ++++ T   + LL  +L   S+  + +
Sbjct: 335 QFTLMLSVGLVILVVFFFLRDLRATIIPSVAVPVSLVATFGAMYLLNYSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  S   +   G      T+   +I+ +   + +     
Sbjct: 395 ATGFVVDDAIVVIENISRHLEEGMSPMAASIRGAREIGFTVLSISISLVAVFIPILLMNG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+ + ++I +SM  +++    M  ++++++K+K           +    I 
Sbjct: 455 LVGRLFREFAVVLSVAIGVSMVVSLTTTPMMCAWMLKHRKVKDRGWFFRWTEAIFDLWIR 514

Query: 540 IQFMRARFWGVGISILFSICS 560
           +     R       +   +  
Sbjct: 515 MYASSLRVVLRHQWMTLIVTM 535



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 70/206 (33%), Gaps = 7/206 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               ++  M+ +   +I     ++ T      I   L       ++   + +L+  +   
Sbjct: 295 EIVDKINAMLPQLDAQIPAEMELRVTMDRTATIRASLEDVQFTLMLSVGLVILVVFFFLR 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +     + + +  T G   L     +  ++ A+    G+ V+D +VV + +    
Sbjct: 355 DLRATIIPSVAVPVSLVATFGAMYLLNYSLDNLSLMALTIATGFVVDDAIVVIENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +     +S      +   E     +  S++     +P+ +  G V      FA+ ++  I
Sbjct: 412 RHLEEGMSPMAASIRGAREIGFTVLSISISLVAVFIPILLMNGLVGRLFREFAVVLSVAI 471

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
            V+   S+    P++        K  
Sbjct: 472 GVSMVVSL-TTTPMMCAWMLKHRKVK 496



 Score = 39.7 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 94/238 (39%), Gaps = 6/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L ++   + S       +     + +     V+ ++++  +++   ++     IQ   
Sbjct: 783  QALCTITKTNSSLSANHSGQFPSATISFNLAQGVSLSQIVPQIEQISVKLGLPENIQGKF 842

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  +  +    + ++ + +++   + I ++ +   L  ++TL       L    L 
Sbjct: 843  AGAAEAFQSSLNTQPLLILAALVSVYFVLGILYESYIHPLTILSTLPSAGVGALLALLLC 902

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G E N+ ++  +L LIG    + +++ D   +     T   S  + I ++          
Sbjct: 903  GYELNVMSLIGILLLIGIVKKNAIMMIDFAIE--AERTAGKSPEEAIFEACLMRFRPITM 960

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+MAA  + LP+AV    G  +     I +  G++ +   +++    + LF+   R +
Sbjct: 961  TTMAALFAGLPLAVGSGNGAEIRQPLGIAIVGGLIFSQVLTLYTTPVVYLFLDRVRLR 1018


>gi|197121719|ref|YP_002133670.1| protein-export membrane protein SecD [Anaeromyxobacter sp. K]
 gi|196171568|gb|ACG72541.1| protein-export membrane protein SecD [Anaeromyxobacter sp. K]
          Length = 613

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 130/465 (27%), Positives = 220/465 (47%), Gaps = 26/465 (5%)

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
              ++     +R+ + K G+    ++    N+I +     +  E   + +    Q     
Sbjct: 162 EKAVKQAEKVIRNRVDKWGVTEPDIKTKANNQIQVQLPGFKDPEKAKELLGRTAQLEFKI 221

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
            + +                 +      Q+     ++    +          E      G
Sbjct: 222 ADDENP---------------VLDPVRGQLPQCQGDRQGLSLPLPESGCWTVEPVELPNG 266

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
             R    +         + +      +                G   ++ +    YL+  
Sbjct: 267 GTRAATMVAANTRTELEKVISEKLNPLLD-PQKNVIGIGEGQVGQGPIKTTYYRTYLLRA 325

Query: 246 KVEISGIHLNGATANFDP----KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           K E++G ++  A    D     +  +PVV       GAR   ++T +N+ + +A VLD +
Sbjct: 326 KTELTGDYIADAAVAVDQSDTLQRGRPVVSFKMSPEGARLMEKLTTENMRRRMATVLDDK 385

Query: 302 VLTAPVINQ-----AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           V TAP I          +  +  +     + A  +A +L+AG+LP  + I EER VGA L
Sbjct: 386 VETAPYIQGRISSNGQITLGSGRNQQDMFDEANGIALVLKAGALPAPVTITEERTVGATL 445

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G + + KGT A + GL L+V+FM+V Y   GLVAD ++ LN +L LA++S++G TLTLP 
Sbjct: 446 GPELVRKGTLAALVGLALVVVFMVVYYRGTGLVADVALALNGLLVLAVMSMIGTTLTLPG 505

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG VL +G+AVD+N+L+NERIREE R  ++V  S+ +G+ R + TI DS++T L+A VV
Sbjct: 506 IAGFVLTLGMAVDANVLINERIREEMRAGRNVRQSVQLGYDRVFWTIVDSHVTTLVAGVV 565

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           LF +G G +RGFA+T+ + ++ SMFT+I + R +M +  R+   +
Sbjct: 566 LFQYGSGPIRGFAVTLIIGLVASMFTSIVVTRVIMEYFTRHDTAR 610



 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 89/230 (38%), Gaps = 4/230 (1%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L+         Q        +     +    +        +  K   +    TI    
Sbjct: 380 TVLDDKVETAPYIQGRISSNGQITLGSGRNQQDMFDEANGIALVLKAGALPAPVTITEER 439

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  +  EL+RKG +  ++    +++++ + ++    L A   L L+    L   ++ G
Sbjct: 440 TVGATLGPELVRKGTLAALVGLALVVVFMVVYYR-GTGLVADVALALNGLLVLAVMSMIG 498

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A  +  +G +V+  V++ +R+R+ M+      + R  +    +      V +
Sbjct: 499 TTLTLPGIAGFVLTLGMAVDANVLINERIREEMRA---GRNVRQSVQLGYDRVFWTIVDS 555

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   ++ + +  +G   I  FA+ +  G+V +  +SI +   I+ +   
Sbjct: 556 HVTTLVAGVVLFQYGSGPIRGFAVTLIIGLVASMFTSIVVTRVIMEYFTR 605



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 20/250 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLP-QSMLDR---------FPSAMPKNR--ISLGLD 49
           R+  W V L   +  + +   +P++   +   D+          P   P  +  ++LGLD
Sbjct: 3   RSWYWRVALVVAVAILSIYQLVPSWFYFKLPPDQRNTEAYDTSVPGWAPDAKHHLNLGLD 62

Query: 50  LRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE 109
           L+GG  L + VD D  V   +   +DE+  FLK + +     + +     +  A +   E
Sbjct: 63  LQGGILLSMGVDVDRAVKTKVARRADEIGEFLKGKNVAFTGTQVVGGGAQVEVAAANPGE 122

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
                +                +          +      + +      A++Q+ ++IR 
Sbjct: 123 VKDAVLGSSGYSEEMYSPGGAPE--------GAVRFAFKDSVLRDFREKAVKQAEKVIRN 174

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
           R+D+ G++E  I+   +++I +QLPG +DP + ++LLG TA++ F      N     + G
Sbjct: 175 RVDKWGVTEPDIKTKANNQIQVQLPGFKDPEKAKELLGRTAQLEFKIADDENPVLDPVRG 234

Query: 230 VRFLRDSDGN 239
                  D  
Sbjct: 235 QLPQCQGDRQ 244


>gi|113866611|ref|YP_725100.1| cation/multidrug efflux pump [Ralstonia eutropha H16]
 gi|113525387|emb|CAJ91732.1| Cation/multidrug efflux pump [Ralstonia eutropha H16]
          Length = 1040

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/537 (11%), Positives = 143/537 (26%), Gaps = 38/537 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           L   P                    +     
Sbjct: 10  RPVATALLMLAILLSGLVA-----YRLLPLSALPEVDYPTIQ---------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F  +   +    +V   +   
Sbjct: 56  PDVMTSSVTAPLERQFGQMPGLKQMSSSSSGGASVITLQFELTLPLDVAEQEVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     + +      + +++   +             +  +   +I   +    
Sbjct: 116 SNLLPSDLPMPPVYSKVNPADAPIMT-IAMTSDTMPLPRLQDMVDTRVAQKISQIQGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L  L  +   +       N +     F       +      
Sbjct: 175 VTISGGQRPAVRIQANPAALASLGMSIDDLRTAIGASNVNGAKGSFDGPARASTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                            I                 I            
Sbjct: 235 LRSA--------------------DEYRQIILGYRNGAPIRITDVAEIVDGPENSRLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L+          +          S    
Sbjct: 275 ANDKPAIVLNIQRQPGANVIEVVDRIKALLPQLQNALPASVHVQLLTDRTTTIRASVEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFELLLAIALVVLVIFLFLRNIPATIIPGVAVPLSLVGTFGVMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     K  S   +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIMRYIEKGDSPMAAALKGSKQIGFTIISLTFSLVAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   R FAIT+ +SILIS   ++++   M   ++ +   + +     +      +
Sbjct: 455 VVGRLFREFAITLAVSILISAVVSLTLTPMMCARLLHHVPEEKLSRFHRASGRFFDN 511



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 50/136 (36%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +     + L +  T G   L G   N   + A+    G+ V+D +V+ + +
Sbjct: 351 LFLRNIPATIIPGVAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
              M+      S      K   +     +  + +    ++P+   G   G +   FAI +
Sbjct: 411 ---MRYIEKGDSPMAAALKGSKQIGFTIISLTFSLVAVLIPLLFMGDVVGRLFREFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  I+++A  S+ +  
Sbjct: 468 AVSILISAVVSLTLTP 483


>gi|157161567|ref|YP_001458885.1| multidrug efflux system subunit MdtC [Escherichia coli HS]
 gi|167008979|sp|A8A1U8|MDTC_ECOHS RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|157067247|gb|ABV06502.1| multidrug resistance protein MdtC [Escherichia coli HS]
          Length = 1025

 Score =  153 bits (385), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 166/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R F +T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFTVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRH 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F + ++  I ++   S+    P++       +K  
Sbjct: 461 REFTVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|313499814|gb|ADR61180.1| Uncharacterized transporter HI0895 [Pseudomonas putida BIRD-1]
          Length = 1027

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/525 (12%), Positives = 158/525 (30%), Gaps = 47/525 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ S+I  +GL       + +  + ++P             L   S + +  +
Sbjct: 9   RRPVLALVVSSLIILMGLFA-----MGKLPIRQYP-------------LLESSTITISTE 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  S ++       S +Q ++ ITL    +R       +   
Sbjct: 51  YPGASAELMQGFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  +L       ++  +     ++       D +     E S  + R    Q    
Sbjct: 111 KVNQVRYRLPEKAYDPVVELSAGDSTAVAYVGFASDSL--SIPELSDYLSRVVEPQFSGI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +        + +    D  ++     T A ++      N          +++    
Sbjct: 169 DGVAKVQSFGGQRLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    +                      ++     G           +    A  
Sbjct: 229 QVDTDLTRVEDF--------------------RELIIRNDGTDLVRLRDIGTVELSAAAT 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +    +E    L   ++    P     +          
Sbjct: 269 QTSATMDGKPAVHLGLFPTPSGNPLVIVEGIRQLLPQIQQTLPPGVKVALAYETARFIDA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V++V+++ +   +  L+A  +I L+++    L+ + G +L L ++
Sbjct: 329 SIHEVLRTLVEAMLIVVLVIWLCLGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +     + +S   +   G       +    +T       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENVHRHIEEGKSPVAAALAGAREIAGPVIAMTLTLAAVYAPI 448

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
              G   G   R FA+T+  ++++S   A+++   M   +++  +
Sbjct: 449 GLMGGLTGTLFREFALTLAGAVIVSGIVALTLSPVMSSLLLQPGQ 493



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 93/270 (34%), Gaps = 8/270 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              +  +        ++    + +       V L  + +   S      S          
Sbjct: 222 QYVLADIQVDTDLTRVEDFRELIIRNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVH 281

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L       G+ +     +  +  +I + +P            +     I + +  ++ + 
Sbjct: 282 LGLFPTPSGNPLVIVEGIRQLLPQIQQTLPPGVKVALAYETARFIDASIHEVLRTLVEAM 341

Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           + +++ IW+        L A+  + L +    G   +FG   NL  + A++  IG  V+D
Sbjct: 342 LIVVLVIWLCLGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDD 401

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +      S          E  G  +  ++       P+ + G   G++
Sbjct: 402 AIVVVENVH---RHIEEGKSPVAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTL 458

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              FA+ +A  ++V+   ++   +P++  +
Sbjct: 459 FREFALTLAGAVIVSGIVAL-TLSPVMSSL 487



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 81/247 (32%), Gaps = 10/247 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     + +       +++       FD +    ++    PG S+             
Sbjct: 765  VRAEDGSLVPLATVVHLEIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLTGE 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L    +   + + + + + +  +++     L  + T+ 
Sbjct: 825  LPPGFSHDWQSESRQYVQEGFAL----MWAFLAALVVIYLVLAAQYESLVDPLIILVTVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     N+     ++TLIG      +++ +   +       ++     I
Sbjct: 881  LSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVEFANE--IQVRDNLDRAAAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + T+ A    VLP+      G +      + +  G++V    ++F+   
Sbjct: 939  VRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPT 998

Query: 819  ILLFIYD 825
            I  ++  
Sbjct: 999  IYAWLAR 1005


>gi|149921272|ref|ZP_01909728.1| protein translocase subunit [Plesiocystis pacifica SIR-1]
 gi|149817932|gb|EDM77394.1| protein translocase subunit [Plesiocystis pacifica SIR-1]
          Length = 717

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/345 (14%), Positives = 123/345 (35%), Gaps = 16/345 (4%)

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
            +T I++ R  +    R    +          +        +      +     +     
Sbjct: 376 PYTFIALERETLETFFRELPAEWRLPKTHKVAYGQLPIPLRRGEEPTQFWRTYIVRSRAD 435

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN-----------LESLQIGDISF 608
                  +         G  Q+ V  ++       R +           ++ + + D  F
Sbjct: 436 ITGDRIINATVGFKQDTGVPQVEVSFDKIGARDFDRMSGDNVGRKMAIIMDDMVMSDPVF 495

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  N ++ L   PG+S+ +     +   K   +      +    VG  + +E + K
Sbjct: 496 NERISGGNVVITLGSTPGESIREAANDLVKVLKSGSLPARLNKEFEIRVGADLGQESVEK 555

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           G    +I    +++++ I ++    L A+  L++++   L   ALF     L  +A ++ 
Sbjct: 556 GFKAFVIGLGLVIVFMGIYYR-GAGLIAVFALVMNMVLVLAAMALFQATLTLPGIAGIVL 614

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG +V+  V++++R+R+ ++      + R  I+   +      + + +   I+ + +  
Sbjct: 615 TIGMAVDANVIIFERVREFLRE---GYTARKAIEAGYDRAFTTILDSQLTTAIAGIVLWQ 671

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +G   I  FAI +  GI  +  + +F A  +       R    ++
Sbjct: 672 FGSGPIRGFAITLLIGIATSIFTGVF-ATRVFFDWQANRRGFDKV 715



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 117/292 (40%), Positives = 181/292 (61%), Gaps = 5/292 (1%)

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             Y+V  + +I+G  +  AT  F   T  P V++SFD++GAR F  ++ DN+G+ +A+++
Sbjct: 426 RTYIVRSRADITGDRIINATVGFKQDTGVPQVEVSFDKIGARDFDRMSGDNVGRKMAIIM 485

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTI-----ETAGILAAMLRAGSLPIKLNIVEERNVG 353
           D  V++ PV N+ I  G   I+   T      E A  L  +L++GSLP +LN   E  VG
Sbjct: 486 DDMVMSDPVFNERISGGNVVITLGSTPGESIREAANDLVKVLKSGSLPARLNKEFEIRVG 545

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           ADLG +S+ KG  A V GL L+++FM + Y   GL+A F++ +N++L LA ++L  ATLT
Sbjct: 546 ADLGQESVEKGFKAFVIGLGLVIVFMGIYYRGAGLIAVFALVMNMVLVLAAMALFQATLT 605

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGIVL IG+AVD+N+++ ER+RE  R+  +   +++ G+ RA++TI DS +T  IA
Sbjct: 606 LPGIAGIVLTIGMAVDANVIIFERVREFLREGYTARKAIEAGYDRAFTTILDSQLTTAIA 665

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            +VL+ FG G +RGFAIT+ + I  S+FT +   R    +    +    + I
Sbjct: 666 GIVLWQFGSGPIRGFAITLLIGIATSIFTGVFATRVFFDWQANRRGFDKVSI 717



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 89/241 (36%), Gaps = 10/241 (4%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKN---RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE 76
           +   P+    + +   PS + +       LGLDL+GG HL   V  D+ +   L   + E
Sbjct: 21  ISVAPSVARIADIT-LPSWITQTFTREFKLGLDLQGGLHLEYSVAVDEALRNKLDQMAGE 79

Query: 77  LRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL 135
           L S  K++     ++ R   + + + F +    +   + V   +      L  DP    +
Sbjct: 80  LESAFKEKKDVKVTVDRTGIDTLDIKFDNPEDVKLATEDV---MAVAIGYLVEDPDAEGM 136

Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195
               E  I + + +  I +     + Q+++ +R+R+D +G++E  I     H ++     
Sbjct: 137 R--AEGIIRMKVPEEVIAENRKAVVGQALDTVRRRVDAMGVAEPNIYPKNRHVVVELPGV 194

Query: 196 EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLN 255
               + LR             +  +   +  +   R    +   +    D  +I G  + 
Sbjct: 195 SDTATELRAAAKEAGDQLSSALRESADVQIKVVENREDPGALDVRIPERDARKILGEAIK 254

Query: 256 G 256
            
Sbjct: 255 I 255


>gi|261250078|ref|ZP_05942655.1| RND multidrug efflux transporter [Vibrio orientalis CIP 102891]
 gi|260939582|gb|EEX95567.1| RND multidrug efflux transporter [Vibrio orientalis CIP 102891]
          Length = 1040

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/609 (12%), Positives = 176/609 (28%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAIF-----KMQVREYPEMTNTVVT---------VSTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSQSVLGKSTITVNMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DPS++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRIWLDPSKMAALGLTATDVMGVLNANNYQSATGQAVGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                     ++                 +    +  +   
Sbjct: 233 QVSNVAELE--------------------NLVVSSDEGDITRLSDIAKVSLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S + 
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLELLPQLERNLPSTIKMNVMYDSTIAINESINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VLIV+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTIVEAAVIVLIVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQGMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +        K  + +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEEPSKFEQKVHHVLDGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +               I+F+   +   F        + KG + L   A    +L  
Sbjct: 513 YAKMLKAVMQHRPVVIGFAIIVFASLPMLFKFIPSELAPSEDKGVVMLMGTAPSNANLDF 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 MQNTMNDVN 581



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 85/257 (33%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +         LS +                   E            + +     +  + 
Sbjct: 244 VVSSDEGDITRLSDIAKVSLEKSHDIYRASANGQEAVVAAINAAPSANPINIAADVLELL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++   +P +   N          E I + I  ++ +A+ +LI I +    +   +  I 
Sbjct: 304 PQLERNLPSTIKMNVMYDSTIAINESINEVIKTIVEAAVIVLIVITLFLGSFRAVIIPIV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +          G  +NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSLIGVAMVMQGMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGESPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +     + ++
Sbjct: 481 SPMMCSKMLKANEEPSK 497



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 80/786 (10%), Positives = 201/786 (25%), Gaps = 47/786 (5%)

Query: 67   NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT--LSFADSRFKENIADKVTLFLQGVNS 124
             G +   SD  +  L+K      +    Q  +   ++ A S    NIA  V   L  +  
Sbjct: 249  EGDITRLSDIAKVSLEKSHDIYRASANGQEAVVAAINAAPSANPINIAADVLELLPQLER 308

Query: 125  KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
             L    K N++                         E   E+I+  ++   I    I   
Sbjct: 309  NLPSTIKMNVMY-----------------DSTIAINESINEVIKTIVEAAVIVLIVITLF 351

Query: 185  GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                  + +P    P  L  +      M F       +    +  +  + D         
Sbjct: 352  LGSFRAVIIPIVTIPLSLIGVAMVMQGMGFSW--NLMTLLAMVLAIGLVVDDAIVVLENV 409

Query: 245  DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            D+    G     A      +   PV+ ++           +     G             
Sbjct: 410  DRHIKLGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL---TL 466

Query: 305  APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
            A  +  +            +               +   L+ +  R              
Sbjct: 467  AGSVFVSGIVALTLSPMMCSKMLKANEEPSKFEQKVHHVLDGMTNRYAKMLKAVMQHRPV 526

Query: 365  TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
                   +   +  +          ++    + ++ T    + L       +    +L  
Sbjct: 527  VIGFAIIVFASLPMLFKFIPSELAPSEDKGVVMLMGTAPSNANLDFMQNTMNDVNKILSD 586

Query: 425  GLAVDSNILVNERIREENRKN---QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
               V    +                  +   +   S   + +           V  F   
Sbjct: 587  QPEVAFAQVFTGVPNSNQAFGIASMVPWSEREASQSEVANRVGGLVGNVPGMAVTAFQMP 646

Query: 482  GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
                 G  + +   +            A  +          +  +    +      I I 
Sbjct: 647  ELPGAGSGLPIQFVVTTPNAFESLFSIATDVLTEVKSSPMFVYSDLDLNYDSATMKINID 706

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVRSNLES 600
              +A  +GV +  +    S  +   +     ++ +    +  V     ++   + +    
Sbjct: 707  KDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNNYYVR 766

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--------- 651
               G           + +   +  P  +   +  +  V    T +               
Sbjct: 767  SANGKAVPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFEGIAAEKL 826

Query: 652  ---QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                N + +G           +     ++   + + + I+F+     L  + ++ L I  
Sbjct: 827  PSGYNHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVPLAICG 886

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L   A      N+ +   ++TL+G      +++ +  ++        +S  + + ++  
Sbjct: 887  ALIALAWGAATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSKTEAVMEAAK 944

Query: 767  ETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFI 823
              L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   I  ++
Sbjct: 945  VRLRPILMTTAAMIAGLIPLMYASGAGAAQRFSIGIVIVAGLAIGTIFTLFVLPVIYSYL 1004

Query: 824  YDWRAK 829
             +    
Sbjct: 1005 AEKHKP 1010


>gi|218438021|ref|YP_002376350.1| preprotein translocase subunit SecD [Cyanothece sp. PCC 7424]
 gi|218170749|gb|ACK69482.1| protein-export membrane protein SecD [Cyanothece sp. PCC 7424]
          Length = 471

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 139/518 (26%), Positives = 222/518 (42%), Gaps = 87/518 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   W+++    +    ++                       + LGLDLRGG+ L + V
Sbjct: 1   MKQQRWILLFIFALVIAAIVCI-----------------KTLGLQLGLDLRGGAQLTIAV 43

Query: 61  DEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKV 115
              +         LQ     + + +   G+    ++    +KI +        +     +
Sbjct: 44  KPTEEVTTISQNDLQGVQTVIENRINALGVSESLVQTAGGDKILVQLPGVTDPQQAERIL 103

Query: 116 TLFLQGVNSKLNVDPKKN-----LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
               Q    +     +        +   TE E++++ ++ N  +      + +  I    
Sbjct: 104 GGTAQLEFRQQRQGTEGQFQAIYGIKRQTEAELALIKNETNNPEQKEKIAQLTKSIQNTN 163

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
            + + + +S                                 +     P+ ++ G  + V
Sbjct: 164 EEILTLFDSVDLSGK---------------------------NLKDARPSPTQSGNGWEV 196

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
               D  G +   E   +++G   +      D     PVV   F   G            
Sbjct: 197 AIRFDDAGGKKFAELTKQLAGTGRSIGIFLDDNLISGPVVGPEFAATG------------ 244

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                                I  G A I+GNFTIETA  LA  LR GSLP  + +VE R
Sbjct: 245 ---------------------ITGGAAVITGNFTIETANELAVQLRGGSLPFPVEVVENR 283

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VGA LG DSI     A + GL L+++FM + Y   G++AD ++ +  ILTLA  +L+G 
Sbjct: 284 TVGATLGQDSIRSSIYAGIGGLALVLVFMGLYYRLPGVIADVALAIYTILTLAAFALIGV 343

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP IAG +L IG+AVD+N+L+ ER REE R  Q+++ S++ GF RA+S+I DSN+T 
Sbjct: 344 TLTLPGIAGFILSIGMAVDANVLIFERTREELRAGQTLYRSVESGFYRAFSSILDSNVTT 403

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
           LIA   LF+ G G V+GFA+T+ + +LISMFTA++  R
Sbjct: 404 LIACGALFWLGSGLVKGFALTLAIGVLISMFTALTCSR 441



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 85/216 (39%), Gaps = 4/216 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   I                      G+   +T     V+ +   +     +     V
Sbjct: 226 LDDNLISGPVVGPEFAATGITGGAAVITGNFTIETANELAVQLRGGSLPFPVEVVENRTV 285

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ IR  I   I     +L+++ + ++    + A   L +    TL  FAL G+ 
Sbjct: 286 GATLGQDSIRSSIYAGIGGLALVLVFMGLYYRLP-GVIADVALAIYTILTLAAFALIGVT 344

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      +    ++          + +++
Sbjct: 345 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GQTLYRSVESGFYRAFSSILDSNV 401

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
              I+   +   G  ++  FA+ +A G++++  +++
Sbjct: 402 TTLIACGALFWLGSGLVKGFALTLAIGVLISMFTAL 437


>gi|313886507|ref|ZP_07820223.1| heavy metal efflux pump, CzcA family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924053|gb|EFR34846.1| heavy metal efflux pump, CzcA family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 1039

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/680 (10%), Positives = 192/680 (28%), Gaps = 50/680 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++++  +  +GL       L +  +D  P       +                 
Sbjct: 9   RRPVTTIMIFVGVVVLGLFA-----LTRLPIDLLPDMQINRVM---------IVTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +      + + +          ++  + +TL   +    EN  +     +  
Sbjct: 55  APEEVENNVTKPIQNVLNGINGVKHITSQSKENVSVVTLELREGLDIENAINDTRDKISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L        ++     ++ I++     D       +       Q I  +G  +   
Sbjct: 115 ITEVLPDGAGTPNIIKFGMDDLPILMLSIKSDASSKSLYKILN---DQLITPLGRIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+    DP +L     T + +S    + N +       +   + S     
Sbjct: 172 GVNLLGARQRQINVYCDPHKLESYGITVSDVSNLIAVANRNVSAGSMNLETSKISLRAIG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  ++  + +                         R  +     ++           
Sbjct: 232 EIVDPKQLEELPITSFA--------------------GRTIYLRDVASVVDGDPEQQTLA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +   ++  +     +        +           V        + S + 
Sbjct: 272 YVDNQRGAMLMLMKQSGANTVQVNKRVLKALPQIVKNLPTDIKIEVIMDQSDFIVRSINS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   +V++++ + +   +   +   +I ++++     L L G +L + S++ + 
Sbjct: 332 LSSTIGITFCVVMLIVLLFLGRWRATFIIVLTIPISLLSAFIYLLLTGNSLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E I     +      +     +    ++  S +T L   + +    
Sbjct: 392 IAIGMVVDDAIVVLENITNHIERGSYPKQAAVHATNEVALSVIASTLTMLAVFLPMVMMQ 451

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------SIDINPL 528
           G      R     + + +++S   A+++   +   ++R  + +              + +
Sbjct: 452 GMAGLLFRQLGWIVSIVMIVSTICALALTPTLCAHMLRANRQRQEGKVSQKILRPFNDFI 511

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  +         +R ++  VG+S+     S+ L       +     GG          
Sbjct: 512 QRLTVFYQRTLAWVLRHKWLTVGLSLGIFALSLTLGSLVKTEFMPQGDGGYIFVKAYYPV 571

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                           +   +  + E       Q     S A T   +     ++  + L
Sbjct: 572 GTTIDRPLAEGHRLTEEWHKKYPEIEMLQFSTGQADAFQSGASTLAQDNGDNILSFNIKL 631

Query: 649 STIQNTEIVGPKISRELIRK 668
                 +    +++ E+ R 
Sbjct: 632 VDASERKRSSKEVAAEMRRD 651



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 80/249 (32%), Gaps = 12/249 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R     +            +      L           +V + V K + +IV       
Sbjct: 254 LRDVASVVDGDPEQQTLAYVDNQRGAMLMLMKQSGANTVQVNKRVLKALPQIVKNLPTDI 313

Query: 654 TEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              V    S  ++R          I   + MLI +    +W      + T+ + +     
Sbjct: 314 KIEVIMDQSDFIVRSINSLSSTIGITFCVVMLIVLLFLGRWRATFIIVLTIPISLLSAFI 373

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           +  L G   N+ +++++   IG  V+D +VV + +             +     + NE  
Sbjct: 374 YLLLTGNSLNIISLSSLSIAIGMVVDDAIVVLENI---TNHIERGSYPKQAAVHATNEVA 430

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD- 825
              + +++      LPM +  G            ++  ++V+   ++ +   +   +   
Sbjct: 431 LSVIASTLTMLAVFLPMVMMQGMAGLLFRQLGWIVSIVMIVSTICALALTPTLCAHMLRA 490

Query: 826 -WRAKNARI 833
             + +  ++
Sbjct: 491 NRQRQEGKV 499



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + ++    T  +    + G+  ++ A    + L+G  V + +V+ D     +
Sbjct: 888  SLASPFVIMFSVPFAFTGVIIGLLVTGVPLSIIAFIGAIMLVGIVVKNGIVLID---YAI 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S R  +  +    L   + T++     ++PMA+    G  +     + +AFG+
Sbjct: 945  LNRERGMSVRTALLHAGASRLRPVLMTTLTTVFGMIPMAIGIGQGSEMWQPMGVTVAFGL 1004

Query: 806  VVAASSSIFIAA 817
             ++   ++ +  
Sbjct: 1005 TISTLVTLLLIP 1016


>gi|53711481|ref|YP_097473.1| AcrB/AcrD family multidrug resistance protein [Bacteroides fragilis
           YCH46]
 gi|60679751|ref|YP_209895.1| AcrB/AcrD family RND transport protein [Bacteroides fragilis NCTC
           9343]
 gi|253564457|ref|ZP_04841914.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           3_2_5]
 gi|265764880|ref|ZP_06093155.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           2_1_16]
 gi|52214346|dbj|BAD46939.1| AcrB/AcrD family multidrug resistance protein [Bacteroides fragilis
           YCH46]
 gi|60491185|emb|CAH05933.1| putative AcrB/AcrD family RND transport protein [Bacteroides
           fragilis NCTC 9343]
 gi|251948233|gb|EES88515.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           3_2_5]
 gi|263254264|gb|EEZ25698.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           2_1_16]
 gi|301161213|emb|CBW20751.1| putative AcrB/AcrD family RND transport protein [Bacteroides
           fragilis 638R]
          Length = 1067

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/562 (12%), Positives = 155/562 (27%), Gaps = 46/562 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G+L  L        + ++P   P              +   +   
Sbjct: 9   RPVLSTVISIVIVILGVLGLL-----SLPISQYPDIAPPTVR---------VNTTYQGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTLF 118
                  L      L   +   E +   +       +  I + F      +  A  V   
Sbjct: 55  A---QTVLNSVIAPLEEQINGVENMMYMTSTATNTGEASIEVYFKQGTDPDMAAVNVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +      L  +  K  ++T+  +   +++                       + ++    
Sbjct: 112 VAKAQGLLPAEVTKVGVITSKRQTSMLLVFSLYSSDDKYDNEFLENYAKINLVPEVQRVP 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                +        +     P  + Q       +S      N       FG +       
Sbjct: 172 GVGDAMVLGA-DYSMRIWLKPDVMAQYHLMPTDVSAALAEQNIEAAPGSFGEQ---GKQT 227

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            QY +  K  +                 +    +       +         I        
Sbjct: 228 FQYTLRYKGRL-------------QSQEEFENIVIRANSDGQVLRLKDIATIELGRLTYG 274

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +        I    A  +    I     L     +   P     + +        S
Sbjct: 275 FSNNVNGHPAVTVIVFQTAGSNATAIINDILDLLEKSESTFPPGVKVNISQNANDFLFAS 334

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV IV+++ +   +  L+   +I + +I T  +L ++G ++ L ++ 
Sbjct: 335 IHEVVKTLIEAFILVFIVVYIFLQDLRSTLIPAIAIPVALIGTFFVLYIIGFSINLLTLC 394

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            +VL I + VD  I+V E +  +  +   S   +     +    A  +I    ++  I  
Sbjct: 395 AMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARLASIDAMNELGGAIVSITLVMMSVFIPV 454

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSR 530
             +    G   R F +TM ++I +S   A+++  A+   +++        KS   +    
Sbjct: 455 SFMTGTSGTFYRQFGLTMAIAIALSAVNALTLSPALCAILLKPHDPDAKKKSTLASRFHA 514

Query: 531 FFLIPDCIAIQFMRARFWGVGI 552
            F       ++  + R      
Sbjct: 515 SFNAAYDTVLKKYKKRVLFFIQ 536



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/404 (10%), Positives = 111/404 (27%), Gaps = 35/404 (8%)

Query: 458  RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
            +A   I D+ +      ++    G     GF + +      S+     + +  +  +   
Sbjct: 652  KAREVIKDARVLLFAPPMI---PGYSVSNGFEMNLQDKTGGSLDKFYEVAQDFITKLQAR 708

Query: 518  KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
             +++S   +    F      I     +         +         L++   N       
Sbjct: 709  PEIQSAQTSFNPNFPQYMIDIDAAACKKAGLSPSDILTTLQGYYGGLYSSNFNR-FGKMY 767

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-----------NFLVRLQYQPG 626
             + +    N   +L  + S              F   K           N    +     
Sbjct: 768  RVMIQADPNSRTNLESLNSVKVRNGNEMAPITQFMSVKRIYGPDNIKRFNMFTAMTINGS 827

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             +   +    +   +      L T    E  G     +        +I     + +Y+ +
Sbjct: 828  PADGYSSGQAIQAMQEVAEQTLPTGYGYEFSGMTREEQSSSGSTTAMIFVLCFVFVYLLL 887

Query: 687  ---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV-----------AAVLTLIGY 732
                  +      + ++   +  +  F  L G+  N+  +            A++ L+G 
Sbjct: 888  SAQYESYILPFAVLLSIPFGLAGSFIFAHLMGLANNVLPILGAATNNIYMQIALIMLMGL 947

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ +     +      +S            L   + TS+A  + +LP+      
Sbjct: 948  LAKNAILIVEFA---LDRRKMGMSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAMGV 1004

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G +   +       G+ +     IF+   + +     + K   I
Sbjct: 1005 GANGNRALGTAAVGGMFIGMICQIFVVPALFVIFQYLQEKVKPI 1048



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/416 (11%), Positives = 122/416 (29%), Gaps = 22/416 (5%)

Query: 437 RIREENRKNQSVFCSLDMGFSRAYST-------------IFDSNITALIATVVLFFFGGG 483
            I    ++      +     +R                 I     T+++    L+     
Sbjct: 90  SIEVYFKQGTDPDMAAVNVQNRVAKAQGLLPAEVTKVGVITSKRQTSMLLVFSLYSSDDK 149

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
               F        L+     +  V   M+    Y     +  + ++++ L+P  ++    
Sbjct: 150 YDNEFLENYAKINLVPEVQRVPGVGDAMVLGADYSMRIWLKPDVMAQYHLMPTDVSAALA 209

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
                    S                      +    + + AN    +  ++        
Sbjct: 210 EQNIEAAPGSFGEQGKQTFQYTLRYKGRLQSQEEFENIVIRANSDGQVLRLKDIATIELG 269

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                 + +   +  V +          T ++  +   + +            +    + 
Sbjct: 270 RLTYGFSNNVNGHPAVTVIVFQTAGSNATAIINDILDLLEKSESTFPPGVKVNISQNAND 329

Query: 664 ELIRKG---IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFN 719
            L       +  +I + I + I ++I        L     + + +  T     + G   N
Sbjct: 330 FLFASIHEVVKTLIEAFILVFIVVYIFLQDLRSTLIPAIAIPVALIGTFFVLYIIGFSIN 389

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  + A++  I   V+D +VV + +   +     S     +   ++NE  G  V  ++  
Sbjct: 390 LLTLCAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARLASI--DAMNELGGAIVSITLVM 447

Query: 780 FISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               +P++   G+       F + MA  I ++A +++ ++  +   +      +A+
Sbjct: 448 MSVFIPVSFMTGTSGTFYRQFGLTMAIAIALSAVNALTLSPALCAILLKPHDPDAK 503


>gi|296185289|ref|ZP_06853699.1| heavy metal efflux pump, CzcA family [Clostridium carboxidivorans
           P7]
 gi|296050123|gb|EFG89547.1| heavy metal efflux pump, CzcA family [Clostridium carboxidivorans
           P7]
          Length = 1028

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/610 (10%), Positives = 158/610 (25%), Gaps = 45/610 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +   +I  +G+                P                         
Sbjct: 9   KRPTAVWMAVVLILALGVF-----GYKSMGSSLLPDMNMPIL---------SIMTTYNGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +        + ++    + + F  S         V   +  
Sbjct: 55  SAEDIKKDIVKPIEDSVSGISGVDTISSTSQEGSGSVMIKFKSSANMNTAYLDVQKAMDN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + +L  D  K  +       I I++   N +        +          ++       
Sbjct: 115 ASRRLPKDADKPTIFKMDTNAIPILVVSLNGNANSDELYNEGDT----LKQKLEKIPGVG 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         +L    D + +     +T  +S      N +                 Q 
Sbjct: 171 QVSIMGAQKKELVIRIDKTAMEYYGVSTNTISSKIQAANTTVPAG----------QIKQD 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +   V + G                 V ++                 +           
Sbjct: 221 NMNQSVRVIGQ----------FNNIDSVKNMLIPTTAGGTVRLGDIAKVSLEAPEDTSIM 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + S ++  +     +T       ++          +          S   
Sbjct: 271 RYKGKKTLAVVISKQSDANVVEVADTVKKELQSMKKDIPSGINMDIAMDTTTFITSSLVQ 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K           IVL++     +  LV   +I  ++I T  ++  L  ++ + S+ G+ 
Sbjct: 331 IKHNLIEGIITTAIVLYLFFRSLRSSLVVLVAIPTSLIATFFMMYELHFSMNMLSMMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSL---DMGFSRAYSTIFDSNITALIATVVLF 478
           L +G  VD +I+V E I+      +    +          A   I   ++       ++ 
Sbjct: 391 LVVGTLVDDSIVVIENIQRHFDMGKPPIEAAIGGRKEVGLAAIAISFCDMVVFAPISLMS 450

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----KKMKSIDINPLSRFFLI 534
              G   + F +T+ ++ + S+  + ++   +   +++      K KS         +  
Sbjct: 451 GQIGQMFKEFGLTIVVATVFSLIVSFTVTPMLSARLLKKTEESTKEKSGLFTKSIEIYRG 510

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               ++           I ++FS+  I +      N     +    + +  +    L   
Sbjct: 511 LIIKSLHHRGKVVIAFIIGLIFSVALIPMGLVKLENMPKYDQSEFTIDIKLSAGATLKQT 570

Query: 595 RSNLESLQIG 604
              +  ++  
Sbjct: 571 DEKVAQVENY 580



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 92/266 (34%), Gaps = 26/266 (9%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +         +  S + +++  D        +K  +V +        +   V + +  K+
Sbjct: 763  MKIANQSGQQIAVSQVATVEKADTKQSISREDKQDIVTVSANIAQGKSLGEVSKAIDSKL 822

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLI 701
                  S    +     K   +        +  S   + +I + +   +      + +L 
Sbjct: 823  KATTIPSGYTVSFGGDRKSMDDSFSSLGKALAASVALVYMILVVLYQSYLTPAIRMLSLP 882

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYS-------VNDKVVVYDRMRKNMKLYTTS 754
              I   L   AL G   N  +   ++ L G S       ++    + DR           
Sbjct: 883  SAIMGALIALALTGQSINTMSFIGIIMLEGLSSKNGTLLIDYTNTLMDR----------G 932

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            +S R+ + +S    L   V T+    +S+LP+A+    G  +  S  I +  G++++   
Sbjct: 933  MSLREALVESAITRLRPIVMTTSTIIVSMLPVALSLGEGAELKKSMGIVIIGGMLMSTVL 992

Query: 812  SIFIAAPILLFIYD-----WRAKNAR 832
            ++F+   +   + D     +R + ++
Sbjct: 993  TLFVIPVVYTLMEDFKNFIFRKRKSK 1018



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/260 (10%), Positives = 83/260 (31%), Gaps = 9/260 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + +   A   V L  +              +    +   +V  +    + V     ++ 
Sbjct: 240 NMLIPTTAGGTVRLGDIAKVSLEAPEDTSIMRYKGKKTLAVVISKQSDANVVEVADTVKK 299

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI--AMLIYIWIRFKWYFALG 695
             + + + +P     +  +         + +    +I   I  A+++Y++ R     +L 
Sbjct: 300 ELQSMKKDIPSGINMDIAMDTTTFITSSLVQIKHNLIEGIITTAIVLYLFFR-SLRSSLV 358

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  +   +  T           N+ ++  +  ++G  V+D +VV + +    + +    
Sbjct: 359 VLVAIPTSLIATFFMMYELHFSMNMLSMMGLSLVVGTLVDDSIVVIENI---QRHFDMGK 415

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSS 812
              +       E    ++  S    +   P+++     G +   F + +    V +   S
Sbjct: 416 PPIEAAIGGRKEVGLAAIAISFCDMVVFAPISLMSGQIGQMFKEFGLTIVVATVFSLIVS 475

Query: 813 IFIAAPILLFIYDWRAKNAR 832
             +   +   +     ++ +
Sbjct: 476 FTVTPMLSARLLKKTEESTK 495


>gi|218708135|ref|YP_002415756.1| hypothetical protein VS_0063 [Vibrio splendidus LGP32]
 gi|218321154|emb|CAV17104.1| Integral membrane proteins (AcrB/AcrD/AcrF family ) [Vibrio
           splendidus LGP32]
          Length = 1040

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/609 (12%), Positives = 179/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAIF-----KMQVREYPEMTNTVVT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S    ++ IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSSSVLGKSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D+++S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELVSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DPS++  +  T + +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPSKMAAIGLTASDVMTVLNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                     ++                 +    +  +   
Sbjct: 233 QVSNTEELE--------------------NLVVKSGEGEIIRLSDIAKVSLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLELLPQLEKNLPSNISMNVMYDSTIAINESIQE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VLIV+ + +   +  L+   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTILEAALIVLIVITLFLGSFRAVLIPIITIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIAMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +        K  + +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKAHAEPSKFEQKVHSVLDGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +         +     I+F+   +   F        + KG I L   A    +L  
Sbjct: 513 YERMLGAVMQHRPVFIGFAIIVFASLPLLFKFIPSELAPSEDKGVIMLMGTAPSNANLDF 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 MQNTMNDVN 581



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 82/235 (34%), Gaps = 7/235 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + LS +                   E            + +     +  +  ++ + +
Sbjct: 251 EIIRLSDIAKVSLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELLPQLEKNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I++ I  ++ +A+ +LI I +    +   L  I T+ L + 
Sbjct: 311 PSNISMNVMYDSTIAINESIQEVIKTILEAALIVLIVITLFLGSFRAVLIPIITIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++ 
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIAMMGGITGSLFKEFALTLAGSVFVSGIVALTLSP 482



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 68/781 (8%), Positives = 212/781 (27%), Gaps = 34/781 (4%)

Query: 75   DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            +EL + + K G     + ++ +   +S   S      +      +    +        N+
Sbjct: 238  EELENLVVKSG--EGEIIRLSDIAKVSLEKSHDVYRASANGQEAVVAAINAAPSANPINI 295

Query: 135  LVTTTEKEISI---VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
                 E    +   + S  +++ +    I  +  I       +  +   +  +       
Sbjct: 296  AADVLELLPQLEKNLPSNISMNVMYDSTIAINESIQEVIKTILEAALIVLIVITLFLGSF 355

Query: 192  QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK--GFMFGVRFLRDSDGNQYLVEDKVEI 249
            +       +    L+G  A +        N       +  +  + D         D+   
Sbjct: 356  RAVLIPIITIPLSLIG-VAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIK 414

Query: 250  SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             G     A      +   PV+ ++         +       G   ++  +  +  A  + 
Sbjct: 415  LGESPFRAAIIGTREIAVPVIAMTLTLGA---VYAPIAMMGGITGSLFKEFALTLAGSVF 471

Query: 310  QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +            +               +   L+ +  R                   
Sbjct: 472  VSGIVALTLSPMMCSKMLKAHAEPSKFEQKVHSVLDGMTNRYERMLGAVMQHRPVFIGFA 531

Query: 370  AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
              +   +  +          ++    + ++ T    + L       +    +L     V 
Sbjct: 532  IIVFASLPLLFKFIPSELAPSEDKGVIMLMGTAPSNANLDFMQNTMNDVNQILSDQPEVA 591

Query: 430  SNILVNERIREENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
               +             +      +   S++       N+   +  + +  F    + G 
Sbjct: 592  YAQVFTGVPNANQAFGIASMVPWSEREASQSDVANRVGNLVKDVPGMAVTAFQMPELPGA 651

Query: 489  AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
               + +  +I+   +   +  +   I+       + +            + I   + +  
Sbjct: 652  GSGLPIQFVITTPNSFESLFQITTDILADVSSNPLFVYSDLDLNYDSATMKINIDKDKAG 711

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGI---QLGVLANRPVDLSVVRSNLESLQIGD 605
              G+++     ++  + + G    ID  G        V     ++   + +       G+
Sbjct: 712  AYGVTMQDIGITLGTMMSDGYVNRIDLNGRSYEVIPQVERKFRLNPESMNNYYVRAADGN 771

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI------------QN 653
                      + +   +  P  +   +  +  V      +                   N
Sbjct: 772  AVPLGSLITIDVVAEPRSLPHFNQLNSATIGAVPAPGAAMGDAIAWFEDTAANKLPSGYN 831

Query: 654  TEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
             + +G           +     ++   + + + I+F+     L  + ++ L I   L   
Sbjct: 832  HDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVPLAICGALIAL 891

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            A      N+ +   ++TL+G      +++ +  ++    +  +    + + ++    L  
Sbjct: 892  AWGAATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHHHKTR--IEAVMEAAKVRLRP 949

Query: 772  SVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRA 828
             + T+ A    ++P+    G      F+I +    G+ +    ++F+   I  ++ +   
Sbjct: 950  ILMTTAAMIAGLIPLMYASGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLAEKHK 1009

Query: 829  K 829
             
Sbjct: 1010 P 1010


>gi|293605252|ref|ZP_06687638.1| multidrug RND efflux transporter [Achromobacter piechaudii ATCC
           43553]
 gi|292816308|gb|EFF75403.1| multidrug RND efflux transporter [Achromobacter piechaudii ATCC
           43553]
          Length = 1026

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/517 (11%), Positives = 133/517 (25%), Gaps = 38/517 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      + L   +  +G +           +   P                     L  
Sbjct: 6   LHRPVACLFLAVALTLLGAVA-----WRLLPVAPLPQVDFPTIE---------VRAELPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    +     +        S  Q   ++ L F   R     A  V   L 
Sbjct: 52  ASPESMASTVAAPLERALGSIAGVSAMTSSSNQGATRVQLQFELDRDINEAARDVQAALN 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L     ++          + ++    +      A +           ++      
Sbjct: 112 AARGELPSGMPQSPSYRKVNPSQAPIM-ALALSSATRPAGQLYDLGSTVLEQKLSQINGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +       L  +  + +P+ L         +          +          R   G  
Sbjct: 171 GEVTMGGSSLPAVRVQVNPNALAHYGVALDDVRRAIADAAPLRPLGQLDSAGQRWEVGTP 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                          +                 +   +      
Sbjct: 231 EQPRGA--------------------DEYGRLIVRHDDGAVIRLAQVARVSDSVENRYSS 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        S +   +   TI+        LRA         V          +  
Sbjct: 271 GFHNRNPAVVLTISRQTGANIIETIDAINAALPGLRALLPADVDLTVALDRSPGIKATLR 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   LV++V+++ +   +   +   +I + +I T A++   G +L   S+  +
Sbjct: 331 EAHITLLLATALVILVVWLFLGSARAAAIPSVAIPVCLIATFAVMHAWGFSLNNLSLMAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++  GL VD  I+V E I     +  S   +   G      T+    +   +  V + F 
Sbjct: 391 IVAAGLVVDDAIVVLENISRHLERGLSPRKAALRGVREVGFTLVAMTVALSVVFVSILFM 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG      R F+IT+  + +IS+  +++I+ A+    
Sbjct: 451 GGLVERLFREFSITLVAATVISLVVSVAIIPALCARW 487



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 92/268 (34%), Gaps = 7/268 (2%)

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
               + T     G D  G + +       + L+ V    +S++    S  +       L 
Sbjct: 223 QRWEVGTPEQPRGADEYGRLIVRHDDGAVIRLAQVARVSDSVENRYSSGFHNRNPAVVLT 282

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             +    + +     +      +  ++P        +      +  +R+  + ++++   
Sbjct: 283 ISRQTGANIIETIDAINAALPGLRALLPADVDLTVALDRSPGIKATLREAHITLLLATAL 342

Query: 680 MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           +++ +W+       A      + + +  T      +G   N  ++ A++   G  V+D +
Sbjct: 343 VILVVWLFLGSARAAAIPSVAIPVCLIATFAVMHAWGFSLNNLSLMALIVAAGLVVDDAI 402

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           VV + +    +     +S R    + + E     V  ++A  +  + +   GG V     
Sbjct: 403 VVLENI---SRHLERGLSPRKAALRGVREVGFTLVAMTVALSVVFVSILFMGGLVERLFR 459

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFI 823
            F+I +    V++   S+ I   +    
Sbjct: 460 EFSITLVAATVISLVVSVAIIPALCARW 487



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 81/202 (40%), Gaps = 6/202 (2%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             + L  +   +  ++  STIQ       +  ++ ++     ++   +A+ + + I ++  
Sbjct: 817  EQGLAAIDAALATLMVPSTIQTRLGGDARNFQQSLQDQPWLILAVLVAIYLVLGILYESP 876

Query: 692  F-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  ++TL       L    +  IEF L A+  +  L+G  + + +++ D        
Sbjct: 877  LHPLTILSTLPSAGVGALLALHIANIEFTLIALLGLFLLVGIVMKNAILMID--FALSLE 934

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                ++    I ++    L   V T++A  +  LP+ +    G  +     I +  G+++
Sbjct: 935  RREGLTPSQAIHRAAMLRLRPIVMTNLAGLLGALPLVLGMGEGSELRRPLGIAIVGGLMI 994

Query: 808  AASSSIFIAAPILLFIYDWRAK 829
            +   +++    + L +   R K
Sbjct: 995  SQFLTLYTTPIVYLALERLRLK 1016


>gi|237799908|ref|ZP_04588369.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022763|gb|EGI02820.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 1005

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/523 (13%), Positives = 149/523 (28%), Gaps = 42/523 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVD 61
               ++L   I  +G++       P+  +   P A                 +   L   
Sbjct: 2   PVATLLLTFAIVLLGVIA-----FPRLPIAPLPEAEFPT-----------IQITAQLPGA 45

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        S       +TL F  ++  +  A +V   +  
Sbjct: 46  SPETMASSVATPLEVQFSAIPGMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINT 105

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D              S VL   ++   +    + S         Q+   E   
Sbjct: 106 AAGRLPADMPSLPTWRKVNPADSPVLI-LSVSSSLMPGTDLSDVSETILARQLSQIEGVG 164

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   + +    +  +  P +L  L  T A +                             
Sbjct: 165 QVYITGQQRPAIRVQAAPEKLAALGLTLADIRLAV--------------------QQTSL 204

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +          ++  ++N      +    +                 +           
Sbjct: 205 NLAKGALYGKDSISTLSSNDQLFKPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKA 264

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L+          V          S   
Sbjct: 265 WSGDQQGVNIAIFRQPGANIVETVDRIQRELPRLQEMLPAAVDVSVLNDRTRTIRASLHE 324

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+ V+ + +      L+    + +++I + A++ L G +L   ++  IV
Sbjct: 325 VELTLLIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIV 384

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E I       Q +  +   G      T+   + + + A + L F G
Sbjct: 385 VAVGFVVDDAIVVVENIHRHLEAGQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMG 444

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G   + FA+T   +ILIS+  ++++   +    +R     
Sbjct: 445 GVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMRAPTHH 487



 Score = 84.4 bits (206), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 236 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVETVDRIQREL 295

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 296 PRLQEMLPAAVDVSVLNDRTRTIRASLHEVELTLLIAVLLVVAVMALFLRQLSATLIVSA 355

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 356 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 412

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 413 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 472

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 473 APTLAALFMR 482



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 78/197 (39%), Gaps = 6/197 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   ++I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 809  DAVRMLDQAKNEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 868

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    L G +F++ A+  V+ LIG    + +++ D         
Sbjct: 869  HPLTIISTLPSAGIGALLLLWLMGQDFSIMALIGVVLLIGIVKKNGILLVD--FALQAQR 926

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               +S +D I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 927  EQGLSPQDAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVS 986

Query: 809  ASSSIFIAAPILLFIYD 825
               ++F    I L +  
Sbjct: 987  QMLTLFTTPVIYLQLER 1003


>gi|323493184|ref|ZP_08098314.1| hypothetical protein VIBR0546_10459 [Vibrio brasiliensis LMG 20546]
 gi|323312531|gb|EGA65665.1| hypothetical protein VIBR0546_10459 [Vibrio brasiliensis LMG 20546]
          Length = 1040

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/609 (12%), Positives = 180/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAIF-----KMQVREYPEMTNTVVT---------VSTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSQSVLGKSTITVNMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DPS++  L  T + +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRIWLDPSKMAALGLTASDVMGVLNANNYQSATGQAVGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+S + ++                                  +    +  +   
Sbjct: 233 QVSNVEELSNLVIST--------------------DDGDVTRLSDIAKVSLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S + 
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLELLPQLERNLPSTIKMNVMYDSTIAINESINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VLIV+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTIVEAAVIVLIVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQGMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +        K  + +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEEPSKFEQKVHHILDGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + +               I+F+   +   F        + KG + L   A    +L  
Sbjct: 513 YANMLKAVMQHRPVVIGFAIIVFASLPMLFKFIPSELAPSEDKGVVMLMGTAPSNANLDF 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 MQNTMNDVN 581



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 85/257 (33%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +         LS +                   E            + +     +  + 
Sbjct: 244 VISTDDGDVTRLSDIAKVSLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++   +P +   N          E I + I  ++ +A+ +LI I +    +   +  I 
Sbjct: 304 PQLERNLPSTIKMNVMYDSTIAINESINEVIKTIVEAAVIVLIVITLFLGSFRAVIIPIV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +          G  +NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSLIGVAMVMQGMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGESPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +     + ++
Sbjct: 481 SPMMCSKMLKANEEPSK 497



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 80/786 (10%), Positives = 201/786 (25%), Gaps = 47/786 (5%)

Query: 67   NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT--LSFADSRFKENIADKVTLFLQGVNS 124
            +G +   SD  +  L+K      +    Q  +   ++ A S    NIA  V   L  +  
Sbjct: 249  DGDVTRLSDIAKVSLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELLPQLER 308

Query: 125  KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
             L    K N++                         E   E+I+  ++   I    I   
Sbjct: 309  NLPSTIKMNVMY-----------------DSTIAINESINEVIKTIVEAAVIVLIVITLF 351

Query: 185  GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                  + +P    P  L  +      M F       +    +  +  + D         
Sbjct: 352  LGSFRAVIIPIVTIPLSLIGVAMVMQGMGFSW--NLMTLLAMVLAIGLVVDDAIVVLENV 409

Query: 245  DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            D+    G     A      +   PV+ ++           +     G             
Sbjct: 410  DRHIKLGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL---TL 466

Query: 305  APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
            A  +  +            +               +   L+ +  R              
Sbjct: 467  AGSVFVSGIVALTLSPMMCSKMLKANEEPSKFEQKVHHILDGMTNRYANMLKAVMQHRPV 526

Query: 365  TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
                   +   +  +          ++    + ++ T    + L       +    +L  
Sbjct: 527  VIGFAIIVFASLPMLFKFIPSELAPSEDKGVVMLMGTAPSNANLDFMQNTMNDVNAILSD 586

Query: 425  GLAVDSNILVNERIREENRKN---QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
               V    +                  +   +   S   + +           V  F   
Sbjct: 587  QPEVAFAQVFTGVPNSNQAFGIASMVPWSEREASQSEVANRVGGLVSNVPGMAVTAFQMP 646

Query: 482  GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
                 G  + +   I            A  +          +  +    +      I I 
Sbjct: 647  ELPGAGSGLPIQFVITTPNAFESLFSIATDVLTEVKSSPMFVYSDLDLNYDSATMKINID 706

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVRSNLES 600
              +A  +GV +  +    S  +   +     ++ +    +  V     ++   + +    
Sbjct: 707  KDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNNYYVR 766

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--------- 651
               G           + +   +  P  +   +  +  V    T +               
Sbjct: 767  SANGKAVPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFEGVAAEKL 826

Query: 652  ---QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                N + +G           +     ++   + + + I+F+     L  + ++ L I  
Sbjct: 827  PSGYNHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVPLAICG 886

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L   A      N+ +   ++TL+G      +++ +  ++         +  + + ++  
Sbjct: 887  ALIALAWGAATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLGKT--EAVMEAAK 944

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++
Sbjct: 945  VRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTIFTLFVLPVIYSYL 1004

Query: 824  YDWRAK 829
             +    
Sbjct: 1005 AEKHKP 1010


>gi|282877718|ref|ZP_06286533.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella buccalis ATCC 35310]
 gi|281300290|gb|EFA92644.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella buccalis ATCC 35310]
          Length = 1069

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/523 (11%), Positives = 146/523 (27%), Gaps = 35/523 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G +      L    ++++P   P                     
Sbjct: 8   KRPVLSTVISVVIVILGFI-----GLTTLPIEQYPDIAPPTI---------SVWTTYIGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           + + V   +    +E  + ++               +IT+ F      +  A  V   + 
Sbjct: 54  DAETVKNSVLAPLEESINGVENMEYMTSQATNAGAAQITIYFRQGTNPDMCAVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  +  +  +  +  +   +++     +         +       I  I      
Sbjct: 114 QAQALLPAEVNRVGVTVSKRQTSQVLMYTLTSEGGKYDDRFLTNYNNINIIPAIKRVRGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P  ++Q     + ++      N       FG +         
Sbjct: 174 GDVQSPGMKTYSMRIWLKPDVMKQYGLMPSDIAGALAEQNVEAAPGSFGEQSN------- 226

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                     +    I       +         I          
Sbjct: 227 ---------MAYEYVMRYKGRLKTADEFGNIILHSTQTGQTLKLKDVAKIELGGLTYAVS 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   +  +    A  + N   +              P     +          S +
Sbjct: 278 MRNNNQPSSMGMVQQIAGSNANDIAKAVKAELENQAKNFPPGMEYKINYDVTEFLYASIA 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV +V+++ +   +  L+   ++ +++I T   L L G ++ L +++ +
Sbjct: 338 EVLKTLVITLLLVFLVVYIFLQDFRSTLIPLIAVPVSLIGTFFFLQLFGFSINLLTLSAL 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L I + VD  I+V E +  +      S   +     +     I    +      V + F
Sbjct: 398 LLAIAIVVDDAIVVVEAVHAKLDLGYKSALTASIDAMNEIAGAIISITLVMAAVFVPVSF 457

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            GG +    R F +TM +SI+IS   A+++  A+    ++ K 
Sbjct: 458 IGGTSGTFYREFGVTMAVSIIISALNALTLSPALCAIFLKPKN 500



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/446 (10%), Positives = 120/446 (26%), Gaps = 29/446 (6%)

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            A+L+   A  +   + G     G   D    + +      R       ++     +  + 
Sbjct: 598  AMLASNPAIQSREQLQGYNFIAGQGSDQATFIIKLKPFSERNMGQSAMAVLGMIYKQTAQ 657

Query: 463  IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            I D+    ++A       G     G ++ +       +     + +A +  + +  +++ 
Sbjct: 658  IKDAQ---ILAFAPPMIPGFALSNGVSLVLQDKTGGDLNKFFQVTKAYLAELNKRPEIQM 714

Query: 523  IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN------------ 570
               +    +      + +   +         +         ++    N            
Sbjct: 715  AMTSYNPNYPQYLIDVDVAKCKQAGISPATVLSTLQGYYGGMYASNFNAYGKLYRVMIQG 774

Query: 571  ----YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                                    +    S        +I+  N     N  V L     
Sbjct: 775  DVSSRERPEGLNDIYVRTPGGMAPVQSFISMKRVFGPSNINRFNMFTSINVQVTLNSGYS 834

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
               A   + E+    + +         +       +      G++ V+      LI    
Sbjct: 835  TGEAIQAIKEVAATDLPQGYGYDFSGLSRSESESSNA----TGMIFVLCFLFVYLILAAQ 890

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               +      I ++   +     F  LFG   ++    +++ LIG    + +++     +
Sbjct: 891  YESYLLPFAVILSIPFGLAGAFLFTQLFGHNNDIYMQISLIMLIGLLAKNAILIVQFALE 950

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAF 803
                  T ++            L   + TS+A  I +LPM    G       +       
Sbjct: 951  ---RRRTGMAITWSAILGSGARLRPILMTSLAMVIGLLPMMFAMGVGKNGNQTLGAAAVG 1007

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAK 829
            G+++     +F+   + +     + +
Sbjct: 1008 GMLIGTLCQLFVVPGLFVIFQALQER 1033



 Score = 42.4 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 95/286 (33%), Gaps = 13/286 (4%)

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
               S                           + + + +      ++   +    G    
Sbjct: 216 AAPGSFGEQSNMAYEYVMRYKGRLKTADEFGNIILHSTQTGQTLKLKDVAKIELGGLTYA 275

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL--- 665
            +             Q         + + VK ++              +   ++  L   
Sbjct: 276 VSMRNNNQPSSMGMVQQIAGSNANDIAKAVKAELENQAKNFPPGMEYKINYDVTEFLYAS 335

Query: 666 IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           I + +  ++I+ + + + ++I    +   L  +  + + +  T  F  LFG   NL  ++
Sbjct: 336 IAEVLKTLVITLLLVFLVVYIFLQDFRSTLIPLIAVPVSLIGTFFFLQLFGFSINLLTLS 395

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+L  I   V+D +VV + +   + L   S     +   ++NE  G  +  S+   ++ +
Sbjct: 396 ALLLAIAIVVDDAIVVVEAVHAKLDLGYKSALTASI--DAMNEIAGAII--SITLVMAAV 451

Query: 785 ---PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 + G  G+    F + MA  I+++A +++ ++  +      
Sbjct: 452 FVPVSFIGGTSGTFYREFGVTMAVSIIISALNALTLSPALCAIFLK 497


>gi|218886610|ref|YP_002435931.1| acriflavin resistance protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218757564|gb|ACL08463.1| acriflavin resistance protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 1038

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/553 (10%), Positives = 143/553 (25%), Gaps = 42/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +   G++           +   P+                  +  E+ 
Sbjct: 9   RRPVTTCLVMLAMFLFGVV-----GYRNLPVSDLPNVDFPT-----------IQVTAELS 52

Query: 62  E--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + +   +    +   + +        S    + +IT+ FA  R  +  A  V   +
Sbjct: 53  GADPETMASAVATPLERQFATIAGIDSMTSSSTLGRTRITIQFALDRDIDAAALDVQSAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +L  D                +L    +        + +         +I +   
Sbjct: 113 SQAARRLPDDMTTPPYFRKVNPADQPILY-IALTSPTLPLSQVNEYADTMLAQRISMVAG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +  + DP  L        +++      N +             +   
Sbjct: 172 VAQVQVYGSQKYAVRAQVDPRALATRGIGLDEVAKAISDSNVNLPTGTLQGDHTSRNIQA 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              + D                          +                 +   +     
Sbjct: 232 SGQLFDAA--------------------SYRPMVVAWRDGAPVRLGELGRVIDSVEQDRQ 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                           +   +    +     L               V          S 
Sbjct: 272 FTWFNDTRGIVLAVQRQPGSNTVAVVNAVKELLPSFERQLPASVQLNVMYDRSQTIRESV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K T  +   LV++V+F+ +      ++   ++ ++V+ T AL+ + G +L   S+  
Sbjct: 332 DDVKFTLVLTVVLVVLVIFLFLRSLSATVIPSLALPMSVVGTFALMYVFGHSLDNLSLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G  VD  I++ E I       + V  +   G      TI    I+     + + F
Sbjct: 392 LTLAVGFVVDDAIVMLENIVRHKEMGKPVMQAALDGSKEIGFTIISMTISLAAVFIPVLF 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            G   G   R F++ + ++I +S   ++++   +    ++    +       +       
Sbjct: 452 MGGVVGRLFREFSVVIMVAIGLSGVVSLTLTPMLCSRFLKPHGAERHGRVYNALEAFFDG 511

Query: 537 CIAIQFMRARFWG 549
            + I     RF  
Sbjct: 512 LLHIYERTLRFTT 524



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/135 (12%), Positives = 48/135 (35%), Gaps = 6/135 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 +     L + +  T     +FG   +  ++ A+   +G+ V+D +V+ + +   
Sbjct: 354 RSLSATVIPSLALPMSVVGTFALMYVFGHSLDNLSLMALTLAVGFVVDDAIVMLENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++                 E     +  +++     +P+   GG V      F++ +   
Sbjct: 411 VRHKEMGKPVMQAALDGSKEIGFTIISMTISLAAVFIPVLFMGGVVGRLFREFSVVIMVA 470

Query: 805 IVVAASSSIFIAAPI 819
           I ++   S+ +   +
Sbjct: 471 IGLSGVVSLTLTPML 485



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            + ++++    +IYI +      +   L  ++ L       L     FG + NL A   ++
Sbjct: 856  MAMLLALAVFVIYIVLGILYESFIHPLTILSGLPSAGMGALLTLMFFGYDLNLYAFVGII 915

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG    + +++ D   +         +  D I           + T+MAA +  LP+A
Sbjct: 916  MLIGIVKKNAIMMIDFAIE--SERVEGRAPADAIFHGCLVRFRPIMMTTMAALMGALPIA 973

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V    G        + +  G++V+   +++I     +++     
Sbjct: 974  VGFGAGAEERRPLGLAVVGGLIVSQLLTLYITPVYYMYLDKLSR 1017


>gi|27375388|ref|NP_766917.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
 gi|27348524|dbj|BAC45542.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
          Length = 1047

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/544 (13%), Positives = 157/544 (28%), Gaps = 35/544 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + + +   GLL+      P   +   P+                    L   +   +   
Sbjct: 12  IATALLMAGLLLCGLAAYPLLPVGALPNVNYPTIQ---------ISAQLPGADPGTIASS 62

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           L    ++  S +        S      ++T+ F  SR  ++ A  V   +   +  L  +
Sbjct: 63  LATPLEQQLSQIPGVTQLTSSSALGVAQLTVQFELSRTVDSAAVDVLAAINAASPFLPPN 122

Query: 130 PK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                 +      E  I+L     D +    ++         + +I             +
Sbjct: 123 IPYPPTIRKVNPAETPIMLIALTSDSLPLTTVD--AYAENILLPKISQVPGVGLVGIGGQ 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
               +    +P  L         +       N            +  +      +     
Sbjct: 181 QKPAIRVRVNPQALAARGIGLEDVRNVIAGANVDLPKGTLNSPRVTYTLNTNDQLLKP-- 238

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
                                 D+                   +     L          
Sbjct: 239 ------------------SAYEDLIIAYRNGSPVRIRDIGTAIEGPENDLLAGWYGKEPA 280

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                      +   T++    L   L+A   P     +          + S  + T  +
Sbjct: 281 IILAVQRVPGANVIETVDRIKKLLPQLQASVPPAIKVTIAADRTATIRAAVSDVQFTLML 340

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              LV++V+F+ +      ++   ++ L++I T A+L +LG +L   S+  + + +G  V
Sbjct: 341 TVALVVMVIFLFLRNFWATIIPAITVPLSLIGTFAVLYVLGYSLDNLSLMALSIAVGFVV 400

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AV 485
           D  ++V E I     +  +   +   G S    TI    ++ +   + LF  GG      
Sbjct: 401 DDAVVVIENIVRHLEQGMTPMEAALKGSSEIGFTIVSITLSLIAVFIPLFLMGGYVGKLF 460

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           + FA+T+  S+L+S+  ++++   M   +++    K      L+        +A+     
Sbjct: 461 QEFAVTITASLLLSLVISLTLTPMMCARLLKDDSRKKHGRIYLAFERGFDALLALYASGL 520

Query: 546 RFWG 549
           R   
Sbjct: 521 RIVL 524



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 63/134 (47%), Gaps = 7/134 (5%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + M+I++++R  W   + AI T+ L +  T     + G   +  ++ A+   +
Sbjct: 338 LMLTVALVVMVIFLFLRNFWATIIPAI-TVPLSLIGTFAVLYVLGYSLDNLSLMALSIAV 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D VVV + +   ++     ++  +   K  +E     V  +++     +P+ + G
Sbjct: 397 GFVVDDAVVVIENI---VRHLEQGMTPMEAALKGSSEIGFTIVSITLSLIAVFIPLFLMG 453

Query: 791 ---GSVIGSFAIPM 801
              G +   FA+ +
Sbjct: 454 GYVGKLFQEFAVTI 467



 Score = 37.7 bits (85), Expect = 9.0,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 82/210 (39%), Gaps = 6/210 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + +      A    +  ++         +++  +     +  +  +R   + +  + I
Sbjct: 807  VTISFNLQPGAALGDAVTAIQNIEKSTGKPASLSTSFQGNAQAFQSSLRGTPLLIGAALI 866

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + I + + ++     +  ++TL       L       ++ ++ A+  ++ LIG    + 
Sbjct: 867  VIYIILGVLYESLIHPITILSTLPSAGIGALLLLLAVHMDLSVIAIIGIILLIGIVKKNG 926

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +  + +   +S  + I ++        + T+MAA +  +P+ +    G  + 
Sbjct: 927  IMLVDFALEVERQH--GLSPEEAIYQACTLRFRPILMTTMAALLGGVPLMIGSGTGAELR 984

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                  +  G++++   +++    + L++ 
Sbjct: 985  QPLGYTIVGGLMLSQILTLYTTPVVYLYLD 1014


>gi|183220790|ref|YP_001838786.1| preprotein translocase subunit SecD [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189910890|ref|YP_001962445.1| preprotein translocase subunit SecD [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775566|gb|ABZ93867.1| Preprotein translocase, SecD subunit [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167779212|gb|ABZ97510.1| Protein-export membrane protein SecD [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 644

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 132/522 (25%), Positives = 243/522 (46%), Gaps = 34/522 (6%)

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL-----------------RSFLKKEG 85
            I LGLDL+GG  +VL+ D +D+      +Y+ E+                      +  
Sbjct: 129 SIKLGLDLQGGMRVVLKGDFEDYTAKLRDLYAKEIAELNLTLNNPLAKPEEKEKAQNRLS 188

Query: 86  IGVFSMRQIQNKITLSFADSR----------FKENIADKVTLFLQGVNSKLNVDPKKNLL 135
               S      +  +    ++                 ++      +   L        +
Sbjct: 189 EIESSFDLSPMRKIVELEKAKMIIDNRLTTQNLTEPQVRIQKEQDAIEVSLPGVSNSAAI 248

Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195
           +   +   ++       +      I   +     R+  +G  E T   L    +  +   
Sbjct: 249 LEILQNTETVEYRLEEPNSFTYKKI---ISDSESRLMDLGQREKTDIFLFQELVKNKAGK 305

Query: 196 EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLN 255
           +     L  L         +KV    ++               +  ++E K+ +SG  + 
Sbjct: 306 KAQDEFLAGLEKKYNIPKDYKVYAMWARGNSAKSTLL----PRSFVVLERKIALSGNDMT 361

Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSG 315
            A  +++  ++  +V  +    GA +FF++T +N G+ LA+V   +V++ PVIN  I  G
Sbjct: 362 NAQPSYNSNSYGWMVSFTLTPNGAEKFFDLTSENRGRNLAIVWGDKVISNPVINDPIAGG 421

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           +A+ISG+F+ + A  LA ++  G+LPI L+++E R +G  LG +SI  G  A+  G  L+
Sbjct: 422 RAEISGSFSEQEAIRLANVISEGALPIPLSVLEMRFIGPTLGIESIEVGVKAVAIGFFLV 481

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
           +++MI+ Y   GL+AD S+ +N+I+  ALL+L+  TLTLP IAGI+L  G+AVD+N+++ 
Sbjct: 482 MVYMILYYRLGGLIADLSLLVNIIILAALLTLMDFTLTLPGIAGIILTAGMAVDANVIIY 541

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERIREE  + +++  ++  GF  A+ TI D+N+T LIA +++   G G ++GFAIT+   
Sbjct: 542 ERIREEIEEGRALSIAVTRGFENAFWTIMDANVTTLIAGILMIRLGNGPIKGFAITLCWG 601

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           I+ ++FT++ + R  M   +    +  +++ P          
Sbjct: 602 IVTTLFTSLFLSRLFMELTVNRFGVHHLNLRPFFFGKKEGKH 643



 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 83/236 (35%), Gaps = 4/236 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S  R    ++  GD    N               G    Q  +          +    +
Sbjct: 392 TSENRGRNLAIVWGDKVISNPVINDPIAGGRAEISGSFSEQEAIRLANVISEGALPIPLS 451

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +     +GP +  E I  G+  V I    +++Y+ + ++    L A  +L+++I      
Sbjct: 452 VLEMRFIGPTLGIESIEVGVKAVAIGFFLVMVYMILYYRLG-GLIADLSLLVNIIILAAL 510

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             L      L  +A ++   G +V+  V++Y    +  +      +    + +       
Sbjct: 511 LTLMDFTLTLPGIAGIILTAGMAVDANVIIY---ERIREEIEEGRALSIAVTRGFENAFW 567

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             +  ++   I+ + M   G   I  FAI + +GIV    +S+F++   +    + 
Sbjct: 568 TIMDANVTTLIAGILMIRLGNGPIKGFAITLCWGIVTTLFTSLFLSRLFMELTVNR 623


>gi|86750759|ref|YP_487255.1| acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
 gi|86573787|gb|ABD08344.1| Acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
          Length = 1035

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/464 (13%), Positives = 140/464 (30%), Gaps = 25/464 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              V      D + GF+    ++  +  +       S  Q Q+ IT+    +        
Sbjct: 48  VTTVYPGASPDLMQGFITTPLEQAVASAEGIDYITSSSTQGQSLITVYVKLNFDPNQALT 107

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +  V   +  +    ++V +T +  +++    + +++   AI  S  + R     
Sbjct: 108 EVLAKVNSVKYLIPREANDPVIVKSTGETTAVMYIGFSSNELSGSAI--SDYLTRVVQPV 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   E              +    DP R+     +   ++      N             
Sbjct: 166 LSTVEGVASADILGGQTFAMRIWLDPIRMAGRGVSPDDVAAAIRANNFQAAAGQTKGYLT 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +      +                    +       ++                +   
Sbjct: 226 VSNVSTNADL--------------------QNVDQFKQMTVKAKDGGFIRLQDVATVELA 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                     +             Q +    +     L   +     P     V   +  
Sbjct: 266 AQSTDSSVAFSGERAIFIGVQATPQGNPLNIVSGVRALFPDIERNLPPSLKMKVAYDSTK 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T     G+V++V+F+ +   +  ++   +I L++I     +  +G ++ 
Sbjct: 326 FIRSSIDEVEMTLIEAVGIVIVVIFLFLASFRSVIIPVVTIPLSLIGVCTAMLAMGFSIN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  +VL IGL VD  I+V E I     + +S   +  +G       +    IT    
Sbjct: 386 LLTLLAMVLAIGLVVDDAIVVVENIHRHLEEGKSPVQASLIGAREIVGPVISMTITLAAV 445

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              + F G   G   R FA T+  ++++S   A+++   M   +
Sbjct: 446 YAPIGFLGGLTGALFREFAFTLAGAVIVSGIIALTLSPMMCSVL 489



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 72/202 (35%), Gaps = 9/202 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +   +++ +   + +    ++         E+    I  V I  + + +++     +  
Sbjct: 302 ALFPDIERNLPPSLKMKVAYDSTKFIRSSIDEVEMTLIEAVGIVIVVIFLFLA---SFRS 358

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +          G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 359 VIIPVVTIPLSLIGVCTAMLAMGFSINLLTLLAMVLAIGLVVDDAIVVVENIH---RHLE 415

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              S          E +G  +  ++       P+   G   G++   FA  +A  ++V+ 
Sbjct: 416 EGKSPVQASLIGAREIVGPVISMTITLAAVYAPIGFLGGLTGALFREFAFTLAGAVIVSG 475

Query: 810 SSSIFIAAPILLFIYDWRAKNA 831
             ++ ++  +   +   +    
Sbjct: 476 IIALTLSPMMCSVLLKHQESQG 497



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/191 (12%), Positives = 66/191 (34%), Gaps = 8/191 (4%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV--IISAIAMLIYIWIRFK-WYFALGA 696
              + +                  + +     + +    + I + + +  +F+     L  
Sbjct: 817  DFLEQQAKNLPSGFNHDYLADARQYVKEGNQLAITFGFALIIIFLVLAAQFESLRDPLVI 876

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            + ++ + I+  L          N+     +LTL+G      +++ +  R+        + 
Sbjct: 877  MISVPMAISGALIPLFFGVATINIYTQVGLLTLVGLISKHGILMVEFARE--LQLKEGLD 934

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVIGSFAIPMAF--GIVVAASSSI 813
             R  ++ +    L   + T+ A    +LP+    G      F+I +    G+++    ++
Sbjct: 935  KRSAMEMAARVRLRPILMTTAAMVTGLLPLLSASGAGAASRFSIGLVVVSGMLIGTLFTL 994

Query: 814  FIAAPILLFIY 824
            F+   + + I 
Sbjct: 995  FVLPAVYVAIG 1005


>gi|300723578|ref|YP_003712883.1| multidrug transport outer membrane [Xenorhabdus nematophila ATCC
           19061]
 gi|297630100|emb|CBJ90737.1| multidrug transport protein, outer membrane (RND family)
           [Xenorhabdus nematophila ATCC 19061]
          Length = 1031

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 165/607 (27%), Gaps = 46/607 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I   G L  +   +       FP                     +   
Sbjct: 9   QRPVATTLLSLAITLCGALSFVLLPVSPLPQVDFPVIT--------------VQASMPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +     + I L F  +R     A  V   +  
Sbjct: 55  SPETMASSVTTPLERALGRIAGVKEMSSASSLGTSFIYLEFDLNRDINGAARDVQAAINA 114

Query: 122 VNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             S L      K         +  I+L     D       +       +   ++   E  
Sbjct: 115 AQSLLPSGMPSKPQYYKANLSDAPIMLLTLTSDN--YSEGQLYDLASTRMAQKLSQIEGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q   S   L  +  E +P+ L     +   +       N  +                 
Sbjct: 173 SQVSVSGSSLPAIRVELNPNALFNQGVSLNDVGDAISNANVRRPTGYVDSDTQSWQLHTN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++                           I                 +   +  +   
Sbjct: 233 DELKTA--------------------DSYRSIIVHYNNDAPVRLQDVATVKNSVEDIRAA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +         I   +A  +   T++       +L+          + +        S  
Sbjct: 273 GMSGNKSAIAIIIRREAGANIIATVQRIREQLPILQELLPASIHLNIAQDRSPTIRASLQ 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +   AI   LV++V+F+ +  G+  L+   ++ +++I T   + L G +L   S+  +
Sbjct: 333 EVEQALAIAVALVILVVFLFLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I+V E I            +   G      T+   +++ +   + L   
Sbjct: 393 TIATGFVVDDAIVVLENISRHLDAGMKPMQAAFKGVREVGFTVLAMSLSLIAVFIPLVLI 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
               G   R FA+T+  +I IS+  ++++   M   +         K+ +      L   
Sbjct: 453 DELLGRLFRDFAVTLATAIGISLLVSLTLTPMMCAHLLKSSPIKAQKQKRGFGKILLKVQ 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +       R+  + +  + ++     +      +     G +   ++A++ +  
Sbjct: 513 QNYGRSLKWILNHTRWVLLTLVGIIALNIWLYISIPKTFFPQQDTGKMLGFIVADQSISF 572

Query: 592 SVVRSNL 598
             +R  +
Sbjct: 573 QAMREKV 579



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 89/268 (33%), Gaps = 11/268 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                     H  +          + V  N    + +         + DI      G K+
Sbjct: 220 VDSDTQSWQLHTNDELKTADSYRSIIVHYNNDAPVRLQDVATVKNSVEDIRAAGMSGNKS 279

Query: 617 FLVRLQYQPGDSVAQ---TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVG 672
            +  +  +   +       R+ E +      +     +   +   P I   L   +  + 
Sbjct: 280 AIAIIIRREAGANIIATVQRIREQLPILQELLPASIHLNIAQDRSPTIRASLQEVEQALA 339

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    G+
Sbjct: 340 IAVALVILVVFLFLR-SGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +VV + +    +     +       K + E     +  S++     +P+ +    
Sbjct: 399 VVDDAIVVLENI---SRHLDAGMKPMQAAFKGVREVGFTVLAMSLSLIAVFIPLVLIDEL 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FA+ +A  I ++   S+ +  
Sbjct: 456 LGRLFRDFAVTLATAIGISLLVSLTLTP 483



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 88/197 (44%), Gaps = 6/197 (3%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
            +  +  +++ +TE+   S ++++     +  ++  R  ++ ++ + + + + + + ++ +
Sbjct: 817  SDAIGAIERTMTELSVPSAVRSSFSGTAQDFQDSERSQLLVILAAIVTVYLVLGVLYESY 876

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  ++TL       L    LF   F+L A+  ++ L+G    + +++ D   +  + 
Sbjct: 877  IHPLTILSTLPSAGVGALLALELFNTPFSLIAMIGIMLLVGIVKKNAIIMVDFALEAQRS 936

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                +S ++ I ++        + T+++A    LP+ +    G  +     I +  G+V+
Sbjct: 937  G--KLSAQEAIFQASLLRFRPIMMTTLSALFGALPLVMSNGDGAELRFPLGITIVGGLVM 994

Query: 808  AASSSIFIAAPILLFIY 824
            +   +++    + LF  
Sbjct: 995  SQLLTLYTTPVVYLFFD 1011


>gi|291613402|ref|YP_003523559.1| acriflavin resistance protein [Sideroxydans lithotrophicus ES-1]
 gi|291583514|gb|ADE11172.1| acriflavin resistance protein [Sideroxydans lithotrophicus ES-1]
          Length = 1028

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/573 (12%), Positives = 165/573 (28%), Gaps = 40/573 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+ + M+  +G++           +  FP                     +   
Sbjct: 9   RNPIPAVLGFVMLTFLGVMA-----FKAMKIQLFPDIDLPMVT---------VTATMPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +   +  +        +      ++  F   R      + V   +  
Sbjct: 55  SPDQLEAEVARKIENALASSQGLKHIYSHITDGTAIVSAEFRLERDSREALEDVRSTVTR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  +    ++         IV    +   +     E S  +       +   +   
Sbjct: 115 IRSDLPKEMLDPVITKVELSSKPIVTYAISDPDMTEE--ELSWFVDNNITKLLLGVKGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  Q+  E DP+RL+ L  T A++S           G    +  +  +     
Sbjct: 173 AVNRVGGVTRQVRVELDPARLQALNITAAEVSSQLFKIQQEAPGGRTDLGGIEQTVRTLA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   +++ + ++                        RR       ++   +A      
Sbjct: 233 TVKTAEQLAQMEISI--------------------RDGRRIRLDQVADVSDSIAERRAAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +           S     +        L+     +K+       +     +   
Sbjct: 273 LLNGREVVGFEIIRSLGASDVEVGQGVANALETLKQTHPQVKVER-VFNTIDHVYETYKG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   + L +IV+   +   +  +VA  ++ L VI T AL+ + G T+ L ++  + 
Sbjct: 332 SMEMIFEGSLLAVIVVIFFLRNTRATIVAATALPLAVIPTFALMYVFGFTINLVTLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I       ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGVLVDDAIVEIENIMRHLEMGKTPYQAAMEAADEIGMAVIATTFTLVAVFLPTAFMS 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F  T  +++L S+  A  +   M  + +R + + +              C+
Sbjct: 452 GVPGKFFVQFGWTAAVAVLFSLVVARLLTPMMSAYFLRPRVLHATPKWLEIYLKWAQWCL 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
           A +        V     F +           + 
Sbjct: 512 ANRLKTLAMTAVFFIGSFMLAGTLPTAFQPKDN 544



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 80/243 (32%), Gaps = 6/243 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            +++ +   R + L  V    +S+     +      E      ++      V   + +  
Sbjct: 242 QMEISIRDGRRIRLDQVADVSDSIAERRAAALLNGREVVGFEIIRSLGASDVEVGQGVAN 301

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             + + +  P   ++        +         +    S +A+++ I+        + A 
Sbjct: 302 ALETLKQTHPQVKVERVFNTIDHVYETYKGSMEMIFEGSLLAVIVVIFFLRNTRATIVAA 361

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
           T L L +  T     +FG   NL  + A+  ++G  V+D +V  + +   M+      + 
Sbjct: 362 TALPLAVIPTFALMYVFGFTINLVTLLALSLVVGVLVDDAIVEIENI---MRHLEMGKTP 418

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIF 814
                ++ +E     + T+       LP A   G        F    A  ++ +   +  
Sbjct: 419 YQAAMEAADEIGMAVIATTFTLVAVFLPTAFMSGVPGKFFVQFGWTAAVAVLFSLVVARL 478

Query: 815 IAA 817
           +  
Sbjct: 479 LTP 481



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 65/173 (37%), Gaps = 7/173 (4%)

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFALFGI 716
              ++ +EL     + +    + + I + + F+ +     I   LIL I        L   
Sbjct: 835  DAEMMKELFASFGLAMFTGVLCIYIVLVLLFRDFMQPATILWALILSIPGAFLALFLTRT 894

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              ++ ++  ++ L+G +  + +++ +     +      ++  + +  +  +     V T+
Sbjct: 895  AISMPSMIGIIMLMGIATKNSILLVE--YAIVSRRERGMNRSEALLDACKKRARPIVMTT 952

Query: 777  ----MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                       L + V  GS     AI +  G++ +   S+ +   +  ++ D
Sbjct: 953  MAMGAGMLPVALDLGVGDGSFRSPMAIVVIGGLITSTFLSLLVIPVVFTYVDD 1005


>gi|270294942|ref|ZP_06201143.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274189|gb|EFA20050.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1139

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/521 (13%), Positives = 147/521 (28%), Gaps = 44/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGVI-----GLATLPITQYPDIAPPT-------------VSVSATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S          I++ F      +  A  V  
Sbjct: 51  QGANAQTVLNSVIAPLEDQINGVENMMYMSSSATNSGSGDISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +++     ++   +            I ++   
Sbjct: 111 RVSMAQGLLPAEVTKIGVTTRKRQTSMLMVFSIYDEKDQYNIEFLENYANINLIPEVKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +     P  + Q       +       N        G    R + 
Sbjct: 171 NGVGDAMVLG-QDYSMRIWLKPDVMAQYKLIPNDVVAALSEQNIEAAPGQLGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +T +    +                N+       
Sbjct: 227 TYQYTLRYKGRL-------------QQTTEFENIVIKALENGEILRLKDVANVELGRLSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               ++        I    A  +   TI     L     +         + +        
Sbjct: 274 GFNNMVNGHKAVSCIIFQMAGSNATQTISDIEALLDDYSSKLPAGLKINIAQSANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVIKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   V 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARTASIDAMSELGGAIVSITLVMMSVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F G   G   R F +TM ++I  S   A+++  A+    
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGFSALNALTLSPALCAIF 494



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/309 (10%), Positives = 87/309 (28%), Gaps = 28/309 (9%)

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                      +         ++     +   + +    + V     +       +++ + 
Sbjct: 818  QGYYGGLYASNFNSFGKMYRVMVQAEPDATKNMETLQSIKVRNGNEMAPITQFISIKKVY 877

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
              D+  +        ++        S    + +  V ++             E+ G    
Sbjct: 878  GPDVISRFNLYTSMKVMVAPASGYTSGQALQAIAEVAQENLPAG-----FGYELGGMARE 932

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALFG 715
                     G+I     + +Y+ +      +   L  + +    L+       G  AL  
Sbjct: 933  EAETSGSTTGLIFILCFVFVYLLLSAQYESYILPLSVLLSVPFGLLGSFLFVGGIGALGS 992

Query: 716  IEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            I      +           A++ L+G    + +++ +   +  ++    +S         
Sbjct: 993  IPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFALERRRM---GMSITWAAVLGA 1049

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS+A  + +LP+      G +   +       G+++     IFI   + + 
Sbjct: 1050 AARLRPILMTSLAMIVGLLPLMFASGAGANGNRTLGTSAIGGMLIGMILQIFIVPALFVA 1109

Query: 823  IYDWRAKNA 831
                + K  
Sbjct: 1110 FQYLQEKFK 1118



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 77/211 (36%), Gaps = 6/211 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      +E +    +  +P     N            I + I  +I + I
Sbjct: 288 IIFQMAGSNATQTISDIEALLDDYSSKLPAGLKINIAQSANDFLFASIHEVIKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R     +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SARTASIDAMSELGGAIVSITLVMMSVFVPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F + MA  I  +A +++ ++  +      
Sbjct: 466 RQFGLTMAIAIGFSALNALTLSPALCAIFLK 496


>gi|161502716|ref|YP_001569828.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189081605|sp|A9MKX0|MDTB_SALAR RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|160864063|gb|ABX20686.1| hypothetical protein SARI_00765 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1040

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/527 (9%), Positives = 141/527 (26%), Gaps = 38/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + +   G++           +   P                    +     
Sbjct: 19  RPVATTLLMAAMLLAGII-----GYRFLPVAALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAVPMTQVEGMVETRVAQKISQVSGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +                         G    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAIT--------------------GANVN 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +       G  
Sbjct: 224 SAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYKNGAPVRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 284 ANKAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVRDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 344 QFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G   R FA+T+ ++ILIS   ++++   M   ++  + ++  +  
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQNRF 510



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 347 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|325290690|ref|YP_004266871.1| acriflavin resistance protein [Syntrophobotulus glycolicus DSM
           8271]
 gi|324966091|gb|ADY56870.1| acriflavin resistance protein [Syntrophobotulus glycolicus DSM
           8271]
          Length = 1085

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/526 (10%), Positives = 149/526 (28%), Gaps = 40/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++   ++  +G++        +  LD  P       +              +  
Sbjct: 9   KRPVTVLMCVLIVIILGIVS-----YTRIPLDLLPDMDIPVAV---------VSTSYQGV 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++    ++       S  +  + I + F       N A  +   +  
Sbjct: 55  GPQEVEKLVTKPLEQAVGTVQNLKTISSSSSEGSSLIIVQFNYGVDMNNAALDLREKVDL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D    ++       + I+    + +       E           ++  +E   
Sbjct: 115 VKGALPDDVSSPMVFKFDPTSMPILTLSLSSEG--KSLSELQKLAEDTVKPRLERAEGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +       +++    +   ++                            
Sbjct: 173 SVDVRGGTEDIVEIRTKAEKMQGYGISLDTLAGILKAE--------------------NL 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +       G          +  +   +  +            +   ++           
Sbjct: 213 NLPGGDVQKGSQKLTVKTTGEFSSVDDIKQLLVPLGNGANIQLMDIADVELKPDEQTTIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     E A    A L    L      +   +      S + 
Sbjct: 273 KANGKPSINISLMKQSGSNTVKVSEAAQAEIAGLEK-ELDGVNITLVNDSADYVKKSLNQ 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   L +++L++ +   +  L+   SI +++I T ++L     TL + ++ G+ 
Sbjct: 332 VFHEGMVGGLLAVLILYLFLRNVRTTLIIATSIPISIIATFSILYFSDITLNMMTLGGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LG+G  VD +++V E I    +   S   +   G S     +  S +T L   + + F  
Sbjct: 392 LGMGRLVDDSVVVLENIYRFRQNGYSRTEAAVKGSSEVIVAVMASTLTTLAVFLPIVFVQ 451

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           G      + FA+T+  S+  S+  A+++V  +   +++        
Sbjct: 452 GLTSTLFKQFALTVSFSLAASLVVAVTLVPMLAAKLLKINHQDKAP 497



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 63/160 (39%), Gaps = 10/160 (6%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++   +A+LI           L   T++ + I  T        I  N+  +  +   +G 
Sbjct: 337 MVGGLLAVLILYLFLRNVRTTLIIATSIPISIIATFSILYFSDITLNMMTLGGLALGMGR 396

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG- 791
            V+D VVV + +    +      S  +   K  +E +   + +++      LP+    G 
Sbjct: 397 LVDDSVVVLENI---YRFRQNGYSRTEAAVKGSSEVIVAVMASTLTTLAVFLPIVFVQGL 453

Query: 792 --SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             ++   FA+ ++F    + ++S+ +A  ++  +     K
Sbjct: 454 TSTLFKQFALTVSF----SLAASLVVAVTLVPMLAAKLLK 489



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 59/140 (42%), Gaps = 7/140 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +    + I    G   LF  G   ++ ++  ++ L G  V++ +V+ D +  N +     
Sbjct: 918  VIMFSMPIGFAGGILGLFLTGKSLSVNSIIGLIMLAGIVVSNAIVLVDYI--NTRRKVYH 975

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
                  I K+    L   + T++A  +++LPMA+    G  +    AI + FG+ ++   
Sbjct: 976  EDRNTAIIKAGPIRLRPILMTALATILAMLPMALGVGEGAELQAPLAIVVVFGLTLSTVV 1035

Query: 812  SIFIAAPILLFIYDWRAKNA 831
            ++ +   +     D+  K  
Sbjct: 1036 TLVLIPVMYTLFDDFSNKVK 1055


>gi|110634953|ref|YP_675161.1| acriflavin resistance protein [Mesorhizobium sp. BNC1]
 gi|110285937|gb|ABG63996.1| acriflavin resistance protein [Chelativorans sp. BNC1]
          Length = 1024

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/479 (15%), Positives = 136/479 (28%), Gaps = 25/479 (5%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 D + GF+        S  +         R   + +T+        +    +V  
Sbjct: 51  YPGASPDLIQGFITSPIAAAVSTTENIDYVSSQSRPSTSVVTVQMQLGSDSDAALTEVMS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q V  +L  D     +V  T  + +I+        +     + +  I R    ++   
Sbjct: 111 KVQQVRGQLPSDADDPTIVKGTGMQFAIMYIALQNPNMTPE--QLTEYIERVIRPRVSTI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP RL     T  ++       N           ++    
Sbjct: 169 QGVAEVQIIGAQNYAMRIWIDPIRLAARGVTAGEVVSAVNASNFLSAPGKTKNEYVAYPI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  ++                           +     G          ++       
Sbjct: 229 TTETTLQTP--------------------DAFAALPLKSEGDEVVRLRDVADVELAAEST 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        ++A         V      +   
Sbjct: 269 ETIVNFNGRPGTFIGIFPTPSANPLDTADAVIAEMPAIQATLPEGMNMEVVYDATESISA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V+IV+ + +   +  L+   +I L++I    LL L G ++ L S+
Sbjct: 329 SIEEVFKTIGEAVAIVVIVILLFLGSFRSVLMPIVTIPLSLIGVCFLLFLAGFSINLLSL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E I     +  S F +   G     S +    IT       L
Sbjct: 389 LAMVLAIGLVVDDAIVVVENIHRHMEEGMSPFQAAFTGMKEISSAVVAMTITLAAVFAPL 448

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            F G   G   R FA T+  +++IS   A++I   M   I++              F  
Sbjct: 449 AFTGGLTGSLFREFAFTLAGAVVISGIVALTITPMMSARILKSGSHSRFQSFVDRTFTR 507



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 37/238 (15%), Positives = 77/238 (32%), Gaps = 7/238 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +  V L  V     + +  +           F+        + +     +      I 
Sbjct: 248 EGDEVVRLRDVADVELAAESTETIVNFNGRPGTFIGIFPTPSANPLDTADAVIAEMPAIQ 307

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
             +P            +     I +    +  +   ++I I +    +   L  I T+ L
Sbjct: 308 ATLPEGMNMEVVYDATESISASIEEVFKTIGEAVAIVVIVILLFLGSFRSVLMPIVTIPL 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +        L G   NL ++ A++  IG  V+D +VV + +    +     +S      
Sbjct: 368 SLIGVCFLLFLAGFSINLLSLLAMVLAIGLVVDDAIVVVENIH---RHMEEGMSPFQAAF 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             + E     V  ++       P+A  G   GS+   FA  +A  +V++   ++ I  
Sbjct: 425 TGMKEISSAVVAMTITLAAVFAPLAFTGGLTGSLFREFAFTLAGAVVISGIVALTITP 482



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 67/161 (41%), Gaps = 6/161 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +V  I++ + + + +  +F+ +   L  + ++ L I   +    L     N+     ++T
Sbjct: 849  LVAFILAVVVIYLVLAAQFESFRDPLIIMMSVPLSIFGAIVPLNLGLGTLNIYTQVGLIT 908

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG      +++ +    N +     +S R+ I  S    L   + T+ A  + V+P+ +
Sbjct: 909  LIGLITKHGILLVE--FANQQREVHGLSRREAIVASARVRLRPILMTTAAMALGVVPLIL 966

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                G +   S  + +  GI++    ++F+      FI   
Sbjct: 967  AQGAGAAARYSMGLVIFSGILIGTMFTLFVVPMFYTFISSR 1007


>gi|182682014|ref|YP_001830174.1| acriflavin resistance protein [Xylella fastidiosa M23]
 gi|182632124|gb|ACB92900.1| acriflavin resistance protein [Xylella fastidiosa M23]
 gi|307578277|gb|ADN62246.1| acriflavin resistance protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 1071

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/553 (12%), Positives = 159/553 (28%), Gaps = 40/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G+L        +  +   P     + +                 
Sbjct: 9   RRPIATSLLMFGVLLLGIL-----GYKKLPMSALPEVDAPSLV---------VTTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +    +         + ITL F+  +  +  A  V   +  
Sbjct: 55  NAKTMAALVTTPLEHQLGQISGLDMMSSDSSAGLSTITLQFSTHKNLDIAAQDVQAAIHQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L        +        + +++   +        E +         ++       
Sbjct: 115 AT--LPSTLPHQPIYNRVNPADAAIIT-LKLTSDTLPLRELNTYADAILAQRLSQISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +  + +P++L  +  T   +       N +        +    S G   
Sbjct: 172 VVSIAGNVRPAVRIQVNPAQLSNMGLTMESLRNTLTQANVNAPKGSLNGKNQSYSIGTND 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D  +                      D                 N+   +       
Sbjct: 232 QLKDASQ--------------------YRDTIIHYQNGHPVRLSEVANVVDGVENDQISA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A          +   +   T+E    +   LRA         V          S   
Sbjct: 272 WANAKPAVLLEIRRQPGANIIKTVEQIRAILPQLRAVLPTDVHLDVFSDRTETIRASVHE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +  GLV+ V+F+ +      L+   ++ L++  T ++++  G +L   S+  +V
Sbjct: 332 VKFTLLLTIGLVVAVIFVFLRRLWATLIPSVAVPLSLAGTFSVMAFNGMSLDNLSLMALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     + +S   + ++G  +   TI    I+ +   + L    
Sbjct: 392 VATGFVVDDAIVMIENIVRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA  +  +++ISM  ++++   M  ++++   +   D         +    
Sbjct: 452 GVTGRLFNEFAWVLSTAVVISMLVSLTLTPMMCAYLLKPDTLPEGDSPTQITKITLWTRT 511

Query: 539 AIQFMRARFWGVG 551
              + R   W + 
Sbjct: 512 VALYERTLDWVLM 524



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 90/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  ++  +      +      +   +    +        V L+ +     
Sbjct: 230 NDQLKDASQYRDTIIHYQNGHPVRLSEVANVVDGVENDQISAWANAKPAVLLEIRRQPGA 289

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGVIISAIAMLIYI 684
              + +E ++  + ++  +        V    +  +       K  + + I  +  +I++
Sbjct: 290 NIIKTVEQIRAILPQLRAVLPTDVHLDVFSDRTETIRASVHEVKFTLLLTIGLVVAVIFV 349

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R  W   L     + L +  T    A  G+  +  ++ A++   G+ V+D +V+ + +
Sbjct: 350 FLRRLW-ATLIPSVAVPLSLAGTFSVMAFNGMSLDNLSLMALVVATGFVVDDAIVMIENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPM 801
              ++      S R+  +    +     +  +++     LP+ +  G        FA  +
Sbjct: 409 ---VRYIEQGKSGREAAEIGARQIGFTILSLTISLVAVFLPLLLMPGVTGRLFNEFAWVL 465

Query: 802 AFGIVVAASSSIFIAA 817
           +  +V++   S+ +  
Sbjct: 466 STAVVISMLVSLTLTP 481



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 91/247 (36%), Gaps = 11/247 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V   R + LS +     +     IS Q           L      S A   + +   +
Sbjct: 808  MTVGTGRIIPLSALADAKVTNAPRVISHQQQLPSVTISFNLAQGYSLSHAVKAIEQARTQ 867

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
                    +      +       ++    +  ++ S + + I + + ++ +   L  I+T
Sbjct: 868  LQIPAQVRAQFIGKAVEFTSSQSDI----VWLLLASIVVIYIVLGVLYESYIHPLTIIST 923

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    L G+  ++ ++  ++ LIG    + +++ D     ++  +T  S  D
Sbjct: 924  LPSAGVGALLALMLCGLSLSVDSIVGIVLLIGIVKKNAIMMIDF---TIEARSTGSSAHD 980

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+ AA +  LP+A+    G  +     I +  G++++   +++  
Sbjct: 981  AIRRACLLRFRPIIMTTAAALLGALPLALSDGIGSELRRPLGITIVGGLLLSQLITLYTT 1040

Query: 817  APILLFI 823
              I LF 
Sbjct: 1041 PVIYLFF 1047


>gi|238783830|ref|ZP_04627848.1| Multidrug resistance protein mdtB [Yersinia bercovieri ATCC 43970]
 gi|238715217|gb|EEQ07211.1| Multidrug resistance protein mdtB [Yersinia bercovieri ATCC 43970]
          Length = 1047

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 146/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G+L           +   P                    +     
Sbjct: 19  RPVATTLFMVAILLAGIL-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLALPLDVAEQEVQAAINSA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPGDLPYPPIYSKVNPADPPIMT-LAVTSTAIPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTISGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEDYRDLVIAYQNGAPIRLRDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           +          S S  
Sbjct: 284 ANNQQAIVLNIQRQPGVNVIATADSIRQMLPELIKSLPKSVEVNILTDRTTTIRASVSDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L++I T A +  LG ++   ++  + +
Sbjct: 344 QFELLLSIALVVMVIYLFLRNAAATVIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 89/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  I ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSAEDYRDLVIAYQNGAPIRLRDVATIEQGAENNKLAAWANNQQAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   +              +  EL+    
Sbjct: 293 NIQRQPGVNVIATADSIRQMLPELIKSLPKSVEVNILTDRTTTIRASVSDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 349 --LSIALVVMVIYLFLR-NAAATVIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 81/202 (40%), Gaps = 7/202 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +  V +    I   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 830  EAVAAVTQAEQAIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPVTILSTLPTAGVGALLALMLTGHELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGAGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F   P++  ++D  A+N
Sbjct: 1008 QILTLF-TTPVIYLLFDRVARN 1028


>gi|332529199|ref|ZP_08405163.1| acriflavin resistance protein [Hylemonella gracilis ATCC 19624]
 gi|332041422|gb|EGI77784.1| acriflavin resistance protein [Hylemonella gracilis ATCC 19624]
          Length = 1060

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/597 (12%), Positives = 168/597 (28%), Gaps = 43/597 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL-VLEV 60
           RN     +L+ M+  +GL            +  FP           LDL   + +  L  
Sbjct: 9   RNPIPAAMLFVMLTLMGLFS-----FSAMKVQNFPD----------LDLPTITVVATLPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    +   + L+        ++     +T+ F   +  +   D V   + 
Sbjct: 54  ASPNQLENDVARKIENSLATLQGLKHIYTKVQDGVVSMTVEFRLEKGTQEALDDVRSAVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  D ++ ++        +++      D++   A   S  +       +      
Sbjct: 114 KVRGDLPSDLQEPIVNKVELAGGAVLAYTVASDRMDEEA--LSWFVDNDVSKLLLSVRGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   +  ++    DP RL+ L  T A +S           G    +   +      
Sbjct: 172 GAINRVGGVNREVQVLLDPLRLQSLGATAADVSRQLARVQIESAGGKAEIGGSQQPVRTI 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I+G+ +                         R         +   +A     
Sbjct: 232 SALGSAQAIAGMQIAL--------------------SDGRSVRLDQLATVRDTIADRTAA 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L    +     +     S     +      A LR     +++       V        
Sbjct: 272 AFLDGKPVVGFEVARSRGASEIEVGQGVRERLAELRVARPDLQITE-SFDFVTPVEEEFD 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L ++V+++ +   +  +V+  ++ L+ I     +   G T+ + ++  +
Sbjct: 331 ASMKLLYEGAILAVLVVWLFLRDFRATVVSAVALPLSAIPAFIGMHYFGFTINVVTLLAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IG+ VD  I+  E I    R  ++ + +           +  +  T +   +   F 
Sbjct: 391 SLVIGILVDDAIVEVENIVRHMRMGKTPYQAAMEAADEIGMAVIATTFTLIAVFLPTAFM 450

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-KSIDINPLSRFFLIPD 536
               G   + F  T  L++  S+  A  +   M  +++R   M K           L   
Sbjct: 451 AGVPGKFFKQFGWTASLAVFASLVVARVLTPMMAAYLMRPVIMAKDKPRWARGNALLGKL 510

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
              +       W        + C      T            + + +L    +    
Sbjct: 511 WAWMNQHDDPAWLTIYQRWAAWCIRHRWITMVGAAVFFVASVMLIPLLPQGFIPPDD 567



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/237 (10%), Positives = 66/237 (27%), Gaps = 13/237 (5%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +     +  +       F+  ++              +   L + +  +        +
Sbjct: 263 DTIADRTAAAFLDGKPVVGFEVARSRGASEIEVGQGVRERLAELRVARPDLQITESFDFV 322

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              E       + L    I+ V++              +   + +   L L         
Sbjct: 323 TPVEEEFDASMKLLYEGAILAVLVVW-------LFLRDFRATVVSAVALPLSAIPAFIGM 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             FG   N+  + A+  +IG  V+D +V  + +   ++      +      ++ +E    
Sbjct: 376 HYFGFTINVVTLLALSLVIGILVDDAIVEVENI---VRHMRMGKTPYQAAMEAADEIGMA 432

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + T+       LP A   G        F    +  +  +   +  +   +  ++  
Sbjct: 433 VIATTFTLIAVFLPTAFMAGVPGKFFKQFGWTASLAVFASLVVARVLTPMMAAYLMR 489



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 78/176 (44%), Gaps = 7/176 (3%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            EI   ++  E+     + ++   + + I + + FK +      +  L L +        +
Sbjct: 854  EIGDAEVQGEMFASFGLAMLTGVLCIYIVLVLLFKAFLHPFTILAALPLSLGGAFVALLI 913

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                F++ ++  ++ L+G +  + +++ +   +  +L+   +S  D I  + ++     V
Sbjct: 914  ANKSFSMPSLIGLIMLMGVATKNSILLVEYAIEARRLH--GMSRLDAILDACHKRARPIV 971

Query: 774  YTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVVAASSSIFIAAPILLFIYD 825
             T++A  + +LP+AV  G+   SF    AI +  G++ +   S+ +   +   I D
Sbjct: 972  MTTIAMSMGMLPIAVGWGAADASFRSPMAIAVIGGLITSTFLSLLVIPALFTLIDD 1027


>gi|27376740|ref|NP_768269.1| multidrug resistance protein [Bradyrhizobium japonicum USDA 110]
 gi|27349881|dbj|BAC46894.1| multidrug resistance protein [Bradyrhizobium japonicum USDA 110]
          Length = 1038

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/571 (12%), Positives = 172/571 (30%), Gaps = 39/571 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  IGL  A+        + ++P  +    I+                
Sbjct: 9   KRPVLSIVVSFLILLIGLRAAV-----LLPIRQYPK-LTNTVIN--------ITTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +  +       S     + I +    +        +V   +  
Sbjct: 55  SADMIQGFITTPLEQAVASAEGVDYISSSSMLGVSTILVYIKLNFNPNEALTEVLSKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   +  +    ++  ++ +  +++    + D++ + AI  +  + R     I   +   
Sbjct: 115 VKYLIPKESNDPVVTKSSGQTNAVMYIAFSSDELAASAI--TDYLARVVQPVISTVDGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+++     + A++S      N           F         
Sbjct: 173 AADILGGQSFAMRLWLDPAKMAGHGISPAEVSAAIAANNFQAAAGQTKGYFT-------- 224

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       ++  TAN D ++      +                 +     +     
Sbjct: 225 ------------ISDVTANTDLRSVDDFKRMIVKANDGGFVRMEDIAVVELAAQMTDTTV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +              + +    +     L   +     P     V   +      S   
Sbjct: 273 TMNGDHAVFVGVQASPEGNPLNIVRGVRALFPEMERNLPPPLKMKVAYDSSKFIQSSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      +V++V+F+ +   +  ++   +I L+++   +++  LG +  L ++  +V
Sbjct: 333 VKKTLIEAVVVVVVVIFLFLASLRSVIIPVVTIPLSLVGVCSMMLALGFSFNLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL---F 478
           L IGL VD  I+V E I     +  +   +   G       +    IT       +    
Sbjct: 393 LAIGLVVDDAIVVVENIHRHLEEGAAPLQAATRGAREIVGPVISMTITLAAVYAPIGFLG 452

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R FA T+  ++++S   A+++   M    +R  K           F  +    
Sbjct: 453 GLTGGLFREFAFTLAGAVIVSGVVALTLSPMMCSLFLRRAKGGRFARLVNRGFSAVTRWY 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGL 569
             +  R+  +     +        + F +  
Sbjct: 513 GRKLDRSLDYRPITGLFALTMLGLVGFLYMH 543



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 60/491 (12%), Positives = 146/491 (29%), Gaps = 30/491 (6%)

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 ++ GL   VL  I  Y K               +  ++     T  L       
Sbjct: 16  VVSFLILLIGLRAAVLLPIRQYPKLTNTVINITTAYPGASADMIQGF-ITTPLEQAVASA 74

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST------------IFDSNIT 469
            G+     S++L    I    + N +   +L    S+  S             +  S+  
Sbjct: 75  EGVDYISSSSMLGVSTILVYIKLNFNPNEALTEVLSKVNSVKYLIPKESNDPVVTKSSGQ 134

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
                 + F      +   AIT  L+ ++    +     +    +        + ++P  
Sbjct: 135 TNAVMYIAF--SSDELAASAITDYLARVVQPVISTVDGVSAADILGGQSFAMRLWLDPAK 192

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                     +    A       +            T   +          +    +   
Sbjct: 193 MAGHGISPAEVSAAIAANNFQAAAGQTKGYFTISDVTANTDLRSVDDFKRMIVKANDGGF 252

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-----RVLEMVKKKITE 644
                 + +E       +    +G+    V +Q  P  +          +   +++ +  
Sbjct: 253 VRMEDIAVVELAAQMTDTTVTMNGDHAVFVGVQASPEGNPLNIVRGVRALFPEMERNLPP 312

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
            + +    ++         E+ +  I  V++  + + +++         +  + T+ L +
Sbjct: 313 PLKMKVAYDSSKFIQSSIDEVKKTLIEAVVVVVVVIFLFLA---SLRSVIIPVVTIPLSL 369

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
                     G  FNL  + A++  IG  V+D +VV + +    +      +      + 
Sbjct: 370 VGVCSMMLALGFSFNLLTLLAMVLAIGLVVDDAIVVVENIH---RHLEEGAAPLQAATRG 426

Query: 765 INETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             E +G  +  ++       P+       G +   FA  +A  ++V+   ++   +P++ 
Sbjct: 427 AREIVGPVISMTITLAAVYAPIGFLGGLTGGLFREFAFTLAGAVIVSGVVAL-TLSPMMC 485

Query: 822 FIYDWRAKNAR 832
            ++  RAK  R
Sbjct: 486 SLFLRRAKGGR 496



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 63/193 (32%), Gaps = 8/193 (4%)

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWY 691
            +E     +           +        + +     + +  +   ++I++ +        
Sbjct: 810  IEQAVDFLEAEAKKLPPGFSYDFLADARQYVHEGNQLAITFAFALIIIFLVLSAQFESLR 869

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + ++ + +   L    L     N+     +LTL+G      +++ +   +    +
Sbjct: 870  DPLIIMISVPMAMVGALIPPFLGWATMNIYTQVGLLTLVGLISKHGILMVEFANE--LQF 927

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                  R  I+ +    L   + T+ A     +P+      G +   S  + +A G+   
Sbjct: 928  KERFDRRSAIEMAARVRLRPILMTTAAMVTGFIPLLTATGAGAASRFSIGLVLAAGMSAG 987

Query: 809  ASSSIFIAAPILL 821
               ++F+   + +
Sbjct: 988  TLITLFVLPAVYV 1000


>gi|146312329|ref|YP_001177403.1| multidrug efflux system subunit MdtC [Enterobacter sp. 638]
 gi|167008980|sp|A4WCC2|MDTC_ENT38 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|145319205|gb|ABP61352.1| acriflavin resistance protein [Enterobacter sp. 638]
          Length = 1025

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAVAITLCGVL-----GFRLLPVAPLPQVDFPVIM---------ISASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F  +R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFNRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPEALFNQGVSLDDVRSAISNANVRKPQGAIEDSSHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLSDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+ +       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVNSIRARLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISIALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENISRHLEAGMKPLQASLQGTREVGFTVLSMSVSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K  S   N      L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVISLTLTPMMCGWMLKRSKPHSQPRNKGFGRVLVAMQEG 514

Query: 539 -----AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                       R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRIVGLVLVGTIALNVWMYITIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRVKLQD 581



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 93/282 (32%), Gaps = 7/282 (2%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +        + T+           + +       V LS V S  +S+Q    +      
Sbjct: 219 AIEDSSHRWQIQTNDELKTAAEYQPLIIHYNNGAAVRLSDVASVTDSVQDVRNAGMTNAK 278

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               L+  +    + +     +     ++ E +P +             R  + +    +
Sbjct: 279 PAILLMIRKLPEANIIQTVNSIRARLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTL 338

Query: 674 IISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +IS   +++ +++  +     L     + + +  T     L G   N  ++ A+    G+
Sbjct: 339 VISIALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVW 789
            V+D +VV + +    +     +       +   E     +  S++        L M   
Sbjct: 399 VVDDAIVVLENI---SRHLEAGMKPLQASLQGTREVGFTVLSMSVSLVAVFLPLLLMGGL 455

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G ++  FA+ ++  I ++   S+ +   +  ++      ++
Sbjct: 456 PGRLLREFAVTLSVAIGISLVISLTLTPMMCGWMLKRSKPHS 497



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 92/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   + + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TISFNLPTGSSLSEASDAINRTMTQLGVPSTVRGSFAGTAQVFQDTMNSQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     +S +D I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALDAQRNGN--MSPQDAIFQACILRFRPIMMTTLAALFGALPLVISSGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+ ++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLAMSQLLTLYTTPVVYLFFDRLRVRFSR 1017


>gi|317404386|gb|EFV84806.1| AcrB/AcrD/AcrF family protein [Achromobacter xylosoxidans C54]
          Length = 1032

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/529 (10%), Positives = 138/529 (26%), Gaps = 38/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G +           +   P                    +     
Sbjct: 10  RPVATTLSMVAILIAGFIA-----YRMLPVSALPEVDYPTIQ---------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + IT+ F  +   +    +V   +   
Sbjct: 56  PDVMTSLVTSPLERQFGQMPGLNQMSSTSSGGASVITMQFNLTLPLDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D              + VL+   I        +    +  +   ++        
Sbjct: 116 SNLLPSDLPVPPTYNKVNPADAAVLT-LAITSPTMPLPQVRDLVDTRVAQKLSQIPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L         +    V  N ++            +      
Sbjct: 175 VSVAGGQRPAVRVQVNPQALAANGLGLTDLRAAVVGANVNQPKGNLDGPLRSTTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                      D+                   +          
Sbjct: 235 LKSPTD--------------------YNDLIIAYKNNAPLRLSDVARAVEGAEDTRQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +     L   LRA         V          S +  
Sbjct: 275 AGDKPAILLNIQRQPGANVIDVVNRIQALLPQLRAALPATLDVAVVSDRTQTIRDSVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      L+    + L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFEMLLAVALVVMVTFVFLRSLTATLIPSVVVPLSLVGTFGIMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMIENIARHIEEGETPLQAALKGAQQIGFTLISLTFSLIAVLIPLLFMTE 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
             G   R FAIT+ +SILIS+  ++++   M   ++R +  +       
Sbjct: 455 VVGRLFREFAITLAVSILISLVVSLTLTPMMCARLLRAESEQKHGRFHQ 503



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 74/229 (32%), Gaps = 10/229 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               +++  + + Q         + L  Q         V+  ++  + ++          
Sbjct: 258 DVARAVEGAEDTRQAAWAGDKPAILLNIQRQPGANVIDVVNRIQALLPQLRAALPATLDV 317

Query: 656 IVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            V    ++ +           ++  A+ +++           L     + L +  T G  
Sbjct: 318 AVVSDRTQTIRDSVADVQFEMLLAVALVVMVTFVFLRSLTATLIPSVVVPLSLVGTFGIM 377

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   N   + A+    G+ V+D +V+ + +    +      +      K   +    
Sbjct: 378 YLAGFSINNLTLMALTIATGFVVDDAIVMIENI---ARHIEEGETPLQAALKGAQQIGFT 434

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +  + +    ++P+       G +   FAI +A  I+++   S+ +  
Sbjct: 435 LISLTFSLIAVLIPLLFMTEVVGRLFREFAITLAVSILISLVVSLTLTP 483



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 91/264 (34%), Gaps = 6/264 (2%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                         +         V  S++  +  G         ++  +V + +      
Sbjct: 758  QPQFQMNPAALGQIHVPTSTGAQVPLSSIARITEGKTVLAVNRLDQFPMVTVSFNLAPGA 817

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            + +  +E +     EI   ++++          +  +   +  ++ + + M I + + ++
Sbjct: 818  SLSAAVEAITAAEAEIGMPASVETRFQGAALAFQNSLSSTLWLILAAIVTMYIVLGVLYE 877

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   +  ++TL       L    + G E ++  +  ++ LIG    + +++ D      
Sbjct: 878  SYIHPITILSTLPSAGVGALLALLISGTELDMIGIIGIILLIGIVKKNAIMMIDFALD-- 935

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S R  I ++        + T++AA    LP+ +    G  +     + M  G+
Sbjct: 936  AERKRGLSPRAAIHEAALLRFRPILMTTLAALFGALPLMLSTGTGAELRQPLGLVMVGGL 995

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +++   ++F    I L       +
Sbjct: 996  LLSQVLTLFTTPVIYLMFDRMSRR 1019


>gi|313886361|ref|ZP_07820085.1| heavy metal efflux pump, CzcA family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332299818|ref|YP_004441739.1| acriflavin resistance protein [Porphyromonas asaccharolytica DSM
           20707]
 gi|312924176|gb|EFR34961.1| heavy metal efflux pump, CzcA family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332176881|gb|AEE12571.1| acriflavin resistance protein [Porphyromonas asaccharolytica DSM
           20707]
          Length = 1046

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 82/684 (11%), Positives = 189/684 (27%), Gaps = 49/684 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +++  I  IG+       L       FPS                   V    
Sbjct: 9   KRPIAAAMIFVAILVIGVFSLTKLPLDLMPNMEFPSLT--------------VITVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    + + S  +         ++  + I L +         A+     L+ 
Sbjct: 55  SAIEVEEQVSKPLEAVLSSAENLVEIKSISKENVSFIQLRYEWEEDITAAANNARDLLEL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S++       ++       + I+    N D+  +   +    +  Q    +   +   
Sbjct: 115 VKSRMPSQAYTPIIYKINASMMPILGYAVNADENYNGLEDI---VEDQIASALRKVDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +   +   ++  E DP+R++    + A++S      N +             S     
Sbjct: 172 TVIYLGQPQREIRVEIDPTRMQAYGMSVAQLSMMLKANNINVPSGFVTEGAYDFSVRMPG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   E+    +                      +  R         +           
Sbjct: 232 KYECVEELENTVIK--------------------AVNGRVVRVKDVATVRDTFKETDASA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +    +       + ++              +      S + 
Sbjct: 272 FNHVGKGIALLVQKQSGANTVDVVNAVRAEISEIQKDLPSDVQIFEVIGSDELVTSSINN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +       V +V+ + +   K  L+   ++ +++I    +++LLG T+ + S+  +V
Sbjct: 332 LSSSIWYALIFVTLVVLLFLREWKSSLIVFLTMPVSLISAFIVMNLLGYTINIFSLVALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD+ I+V E I +   +      +   G S     I  S +T ++  + L F G
Sbjct: 392 IAIGMVVDNAIVVLENITQHIERGAMPKQAAMFGASEMGLAIAASTLTTIVVFLPLVFMG 451

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      +  A+     ++ S+FTA+++   +   +++              +       
Sbjct: 452 GIVGVMFKQLAVLTVTCMITSLFTALALTPMLSSVLLKPAPRNGEGKKHGKLYNWSERVF 511

Query: 539 AIQFMRARFWGVG---------ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                  R +            +S L     +  L        I       + +      
Sbjct: 512 ESIERVYRNFLGWAVFHKGITLVSALVIFVLVLFLGKAVGTDYIPDIDAGSVSIQFETEQ 571

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S   +     QI  +   +        +       D    T V     K I  I    
Sbjct: 572 GTSHTITEQVGNQIVHLLQDHVPEVAEGGIASITGQTDDGVLTAVGFKEGKNIGTIFCHL 631

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
              +      +   + IR  I  +
Sbjct: 632 KPVDERKRSSQQIADDIRPLIEAI 655



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 83/255 (32%), Gaps = 8/255 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +     +   V    +  +Q  +   Q     +   V++                 +  
Sbjct: 784  EMQVTNLLGQQVPLIAVADIQEKEGPVQIERLTQQRYVKVTSNLNGVSLGDGAKIAEQII 843

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTL 700
                 P     +                ++  II  + + + +  +F+        +  +
Sbjct: 844  DDLETPQGVTVSLGGQVEDQGDTFSSLTLI-FIIGLLLVFMVMAAQFESLLDPFIILFAI 902

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               +   +  F + G   ++     ++ L+G  VN+ +V+ D    +  L     + RD 
Sbjct: 903  PFTLVGVILAFLITGTTLSVVTFIGLIMLVGIVVNNGIVLVD---YSNMLVRRGYTIRDA 959

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            + +S    L   + TSM   + +LPMA+    G  +     I +  G++++   ++ +  
Sbjct: 960  VMESGRSRLRPVLMTSMTTILGMLPMALSRGMGRELYAPLGITIIGGLLISMLVTLILVP 1019

Query: 818  PILLFIYDWRAKNAR 832
                 ++  +    R
Sbjct: 1020 TAYAAMHQRKLNRER 1034



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/206 (12%), Positives = 75/206 (36%), Gaps = 9/206 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +  ++K +   V +  +  ++ +       L       +I   + +L+++    
Sbjct: 296 NAVRAEISEIQKDLPSDVQIFEVIGSDELVTSSINNLSSSIWYALIFVTLVVLLFL---R 352

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +W  +L    T+ + +        L G   N+ ++ A++  IG  V++ +VV + +    
Sbjct: 353 EWKSSLIVFLTMPVSLISAFIVMNLLGYTINIFSLVALVIAIGMVVDNAIVVLENI---T 409

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +        +       +E       +++   +  LP+   G   G +    A+     +
Sbjct: 410 QHIERGAMPKQAAMFGASEMGLAIAASTLTTIVVFLPLVFMGGIVGVMFKQLAVLTVTCM 469

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           + +  +++ +   +   +     +N 
Sbjct: 470 ITSLFTALALTPMLSSVLLKPAPRNG 495


>gi|227536647|ref|ZP_03966696.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Sphingobacterium spiritivorum ATCC 33300]
 gi|227243448|gb|EEI93463.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1067

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/573 (12%), Positives = 153/573 (26%), Gaps = 45/573 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G++  L     +  L +FP   P     + L              
Sbjct: 8   RPVLATVISILLVILGVMGML-----RLPLQQFPDIAPPAVQVMAL-------------Y 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     +    IT+ F      +  A  V  
Sbjct: 50  PGANAETVLRAVAPSLEESINGVENMSYMSSTASNDGSLMITVYFKLGTDPDQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-VISHAIEQSMEIIRQRIDQIGI 176
            +    S+L  +  +  + T  ++   I++     +          +       I ++  
Sbjct: 110 RVAQATSQLPSEVIQAGITTAKQQNSLIMVLDLYTEDEGRYDQTFLNNYAQINIIPELKR 169

Query: 177 SESTIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                Q L         +    DP ++     T +++       N       FG      
Sbjct: 170 ISGVGQALIFGGSKDYSMRVWLDPKQMASYKLTPSEVMTAIQDKNVEAAPGKFGESSR-- 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                                       +       I                 +     
Sbjct: 228 --------------EAFEFVIKYKGKLNQPADYENIIIRSNADGSILRLKDVARVELGAY 273

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +             A  + N        L              +V      A 
Sbjct: 274 TYGSNTRINEKSGINIGIMQLAGSNANEIQIAIQQLMEKAEKDFPKGVKYLVLYNTKDAL 333

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S S  + T      LV +V+F+ +   +  L+   ++ + +I T   + L G ++ L 
Sbjct: 334 DQSISQVQHTLIEAFLLVFLVVFLFLQDFRSTLIPAIAVPVAIIGTFFFMQLFGFSINLL 393

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  ++L IG+ VD  I+V E +  +          +     S     I    +      
Sbjct: 394 TLFALILAIGIVVDDAIVVVEAVHAKMEHTHLPPKLATTSAMSEITGAIISITLVMSAVF 453

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F  G      R FA T+ ++I+IS   A+++  A+    ++  +        +S  
Sbjct: 454 LPIGFMEGSTGVFYRQFAFTLAIAIVISAINALTLSPALCALFLKAPQHSEHPAPKVSFK 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                   + F R     VG            L
Sbjct: 514 EKFFAGFNVGFDRLTKNYVGSLRFLVKYKWVGL 546



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 78/255 (30%), Gaps = 16/255 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V ++ +            S  N                   A   V E+  + + 
Sbjct: 796  KFGEMVPINTLVRLNRVYGPETASRYNLFNSIGINAIPNPGFSSGDAIRAVEEVAAQHLP 855

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTL 700
                      T+        E+   G   VI     + +Y  +      +   L  I ++
Sbjct: 856  SGFTYEFSGMTK-------EEITSGGQSTVIFILCLVFVYFLLAAQYESYIIPLAVILSI 908

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               I        + GI  N+    A++ LIG    + +++ +     ++   T +S    
Sbjct: 909  PTGIFGVFAAIGMTGISNNIYVQVALVMLIGLLAKNAILIVEFA---IQRRRTGLSIAAS 965

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAA 817
              ++    L   + TS+A  + ++PM    G         +I  A G+       +FI  
Sbjct: 966  AFEAAKLRLRPIIMTSLAFIVGMIPMMGATGPSAQGNHSISIAAAGGMFSGVVLGLFIIP 1025

Query: 818  PILLFIYDWRAKNAR 832
             + +     + K ++
Sbjct: 1026 VLFIIFQSLQEKVSK 1040



 Score = 38.9 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + I  T  F  LFG   NL  + A++  IG  V+D +VV + +    
Sbjct: 361 DFRSTLIPAIAVPVAIIGTFFFMQLFGFSINLLTLFALILAIGIVVDDAIVVVEAVH--A 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           K+  T +  +     +++E  G  +  ++      LP+    GS       FA  +A  I
Sbjct: 419 KMEHTHLPPKLATTSAMSEITGAIISITLVMSAVFLPIGFMEGSTGVFYRQFAFTLA--I 476

Query: 806 VV 807
            +
Sbjct: 477 AI 478


>gi|217979429|ref|YP_002363576.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocella silvestris BL2]
 gi|217504805|gb|ACK52214.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocella silvestris BL2]
          Length = 1049

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 75/561 (13%), Positives = 159/561 (28%), Gaps = 33/561 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +    GL+  L        + ++P  +P          +           
Sbjct: 9   RPRFAIVIALVTVVAGLVSLL-----SIPIAQYPDIVPP---------QVSVSTFYPGGS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    +     + K            +  + +SF      +     V   +Q 
Sbjct: 55  AAVVESTIAQPLESQVVGVDKAIYMKSVSGNDGSYSLLVSFELGTNPDINTVNVNNRVQV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             SKL  D ++  +    +    + +      Q     +  S       +D I  +    
Sbjct: 115 ALSKLPEDVQRQGVTVKKQSSALLGVIALYSPQRTHDELFISNYATINLVDDIRSTAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +       RL  L  T+A +       N        G R + D    Q 
Sbjct: 175 DAKLFAAQDYSIRVWVQTDRLTGLGLTSADLIAAIKSQNVQAAVGRIGARPVSDDQQLQL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E K  +S I                   I                 I    A +    
Sbjct: 235 NIETKGRLSSID-------------DFNKIIIRTNADGSVLRLSDVARIELGAANLDRDT 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T+       A             V          +  +
Sbjct: 282 RLNGAPATLIGVYQAPGANALQTLAAVKKRLADAAERFPEDLAWKVTYDPTVFVSATIEV 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+F+ +   +  L+   ++ +++I T  +L+ +G +    S+  ++
Sbjct: 342 VEHTLVEAFILVVLVVFLFLGSLRATLIPTIAVPVSLIGTFVVLNAIGYSANTVSLLALI 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +  +       +   +         + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVEAVEAKMASKPELTPAQATKEAMEEITAPIIAITLVLLSVFVPVAF 461

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R FA+T+  ++ +S   A+++  A+   +++                +   
Sbjct: 462 LPGITGELFRQFAVTVATAMALSAINALTLSPALCAILLKPHHGPRRGPIGAVMRGIDHV 521

Query: 537 CIAIQFMRARFWGVGISILFS 557
             +   + AR   + I  L  
Sbjct: 522 RDSYGAVVARLVRLSIIGLAM 542



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 76/221 (34%), Gaps = 6/221 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 V +Q  P   V+  + L  ++    + +P         +  +  R   + G +  
Sbjct: 817  NNRLAVTVQGAPAPGVSSGQALNAMEAVAAKALPSGYSGEWTDISFQEKRAEGKMGAILG 876

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
                 A L  + +   W   +  + ++ + I        +  +  +L     ++ LIG +
Sbjct: 877  FAVLFAFLFLVALYESWTIPVPVLLSVTIGILGAFAAIVVAHLTLDLYGQIGIIVLIGLA 936

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +  ++        +   +   +         + TS A  + + P+    G+ 
Sbjct: 937  AKNGILIVEFAKE---RREHGVPLLEAATEGARLRFRPVMMTSFAFILGLAPLVFGSGAA 993

Query: 794  I---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    + + P+  G++ A+   IF    + +     R +  
Sbjct: 994  MLARRNVSTPVFGGMIAASFIGIFAIPALYVLFQGMRERIK 1034



 Score = 38.9 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 54/140 (38%), Gaps = 4/140 (2%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + +  T       G   N  ++ A++  IG  V+D +VV + + +  
Sbjct: 363 SLRATLIPTIAVPVSLIGTFVVLNAIGYSANTVSLLALILAIGIVVDDAIVVVEAV-EAK 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
                 ++      +++ E     +  ++      +P+A      G +   FA+ +A  +
Sbjct: 422 MASKPELTPAQATKEAMEEITAPIIAITLVLLSVFVPVAFLPGITGELFRQFAVTVATAM 481

Query: 806 VVAASSSIFIAAPILLFIYD 825
            ++A +++ ++  +   +  
Sbjct: 482 ALSAINALTLSPALCAILLK 501


>gi|188581700|ref|YP_001925145.1| acriflavin resistance protein [Methylobacterium populi BJ001]
 gi|179345198|gb|ACB80610.1| acriflavin resistance protein [Methylobacterium populi BJ001]
          Length = 1045

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/515 (11%), Positives = 126/515 (24%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I  +G +  L   +       +P+                         
Sbjct: 10  RPVATTLSMLAILIVGAVSYLNLPVSALPAVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F      +     V   +   
Sbjct: 56  PEVMTSAVTAPLERQFGQMANLNQMSSQSSAGASVITLQFNLDIPLDIAEQSVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPTDLPAPPVYAKVNPADAPVLT-LALTSATMPLTQVRDLAETRLAQKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +   +         +       N +             +      
Sbjct: 175 VSMGGGQRPAVRVRFNSLAMAAYGLNIDDLRTTIANLNVNTPKGNIDGPTQSYAINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V D                                            +         G  
Sbjct: 235 VRDPAV--------------------YASAIIAYRNGAPVRLTDVAEVVDGAENTRLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T++    L   L A                    S    
Sbjct: 275 ADRTPAVILNIQRQPGANVIDTVDRIKRLLPQLEATMPASVSVATLTDRTTTIRASVHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      L+   S+ L++I  LA +   G +L   S+  + +
Sbjct: 335 QFELMLAIALVVMVIFLFLRSFSATLIPSLSVPLSLIGALAAMDAWGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  S F +   G      TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVVIENIARHVEEGDSPFEAALKGSREIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FAIT+  +I+IS   ++++V  +   +
Sbjct: 455 VVGRLFREFAITLAATIVISAVVSLTLVPMLCARL 489



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 67/152 (44%), Gaps = 7/152 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+I++++R  +   L    ++ L +   L     +G   +  ++ A+    
Sbjct: 338 LMLAIALVVMVIFLFLR-SFSATLIPSLSVPLSLIGALAAMDAWGFSLDNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +      S  +   K   E     +  +++    ++P+   G
Sbjct: 397 GFVVDDAIVVIENI---ARHVEEGDSPFEAALKGSREIGFTIISLTVSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              G +   FAI +A  IV++A  S+ +   +
Sbjct: 454 DVVGRLFREFAITLAATIVISAVVSLTLVPML 485



 Score = 41.2 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 76/197 (38%), Gaps = 8/197 (4%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            + ++ ++    EI   ++               +   +  V  + + + I + + ++ + 
Sbjct: 830  QAVDALETARKEISLPASFNVVPQGSVFAFESALSNELFLVCAAIVTVYIVLGVLYESFI 889

Query: 693  ALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                I + +    I   LG    FG+  ++ A+  ++ LIG    + +++ D        
Sbjct: 890  HPITILSTLPSAGIGALLGLM-WFGLSLDIIAIIGIVLLIGIVKKNAIMMID--FALQAE 946

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 + RD I ++        + T++AA  + +PM +    G  +     I +A G++V
Sbjct: 947  REEGKAPRDAIYEACLLRFRPILMTTLAALFAAVPMIIGSGVGSELRQPLGIVIAGGLIV 1006

Query: 808  AASSSIFIAAPILLFIY 824
            +   ++F    I L   
Sbjct: 1007 SQVLTLFTTPVIYLAFD 1023


>gi|312886323|ref|ZP_07745935.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mucilaginibacter paludis DSM 18603]
 gi|311301209|gb|EFQ78266.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Mucilaginibacter paludis DSM 18603]
          Length = 1062

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/523 (14%), Positives = 154/523 (29%), Gaps = 27/523 (5%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87
               + ++P   P      G              +   V   +    +   +        
Sbjct: 29  TSLPIGQYPEITPPTVQITG---------TYTGADAQTVEQTVATPVEVQVNGTPGMTYL 79

Query: 88  VFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
             +        +T +F       N    V   +      L  + ++  +         ++
Sbjct: 80  TSNSTANGAMSMTANFEVGTDINNATLDVQNRVSIAQPTLPQEVQRLGITVKKRNPSILM 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L      +                 D +  ++       S      +     P +L  L 
Sbjct: 140 LVALYSPKGTHTVPFVDNYTNVFVRDALLRTKGVGDI-VSRADDFSMRIWLKPDKLAALG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A+++      N        G    +++   +Y V  K  +                 
Sbjct: 199 ITAAQVTAALQEQNAQIAAGTVGAPPQKNAQTFEYTVYVKGRL------------VEPEE 246

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
              V +  +       +      +            +     +  +       +   T  
Sbjct: 247 FENVIVKTNPATGTVVYLKDVARVQLGKFNYSGNSYVDGKNASYLLVYQAPGSNAIETAN 306

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L+         +V   +V     S S    T  I   LV++V+F+ +   + 
Sbjct: 307 GVYATMNELKKQFPADVDYVVPFESVTVVKVSVSEVIETLLIALALVIVVVFLFLQSWRA 366

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE-NRKN 445
            L+   +I +++I T      LG T+   ++ G VL IG+ VD  I+V E ++   + K 
Sbjct: 367 TLIPVLAIPVSIIGTFIFFIPLGFTINTLTLFGFVLAIGIVVDDAIVVVEAVQHYIDEKG 426

Query: 446 QSVFCS-LDMGFSRAYSTIFDSNITALIATVVLFFFG--GGAVRGFAITMGLSILISMFT 502
            S   + +      +   I  + I A +   V F  G  G   + FAIT+ +S++IS F 
Sbjct: 427 MSPQEATVHAMRDISAPVIAIALILAAVFVPVGFIPGIVGRLYQQFAITIAISVMISAFV 486

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           A+S+  A+   I++  K+          FF           + 
Sbjct: 487 ALSLTPALCTMILKPMKLDESSTGLNKFFFKFNAWFGNVTNKY 529



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 72/171 (42%), Gaps = 8/171 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL-FGIEFNLTAVAA 725
            K +   I+S + + +++   ++ W      +  + L     +   +L   +  N+ A   
Sbjct: 875  KTVYIFILSLMFVFLFLAALYESWSVPFSVLLAVPLGAFGAILVLSLQPSLTNNVYAQIG 934

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++TLIG +  + +++ +  ++        +       ++++  L   + TSMA  + VLP
Sbjct: 935  LITLIGLAAKNAILIVEFAKE---RVDRGMEVVKATLEAVHLRLRPIIMTSMAFILGVLP 991

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +A     G     +    +  G++ A   +IFI   + + I  +   + ++
Sbjct: 992  LAFSSGAGAEARKTIGWTVLGGMISATFLAIFIVPVLYVIITKFAYGSKKL 1042



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 85/239 (35%), Gaps = 6/239 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               V L  V            +        ++L+  Q    +++     +     ++ +
Sbjct: 258 TGTVVYLKDVARVQLGKFNYSGNSYVDGKNASYLLVYQAPGSNAIETANGVYATMNELKK 317

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILD 703
             P             + +  + + I  ++I+   +++ +++    W   L  +  + + 
Sbjct: 318 QFPADVDYVVPFESVTVVKVSVSEVIETLLIALALVIVVVFLFLQSWRATLIPVLAIPVS 377

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  T  FF   G   N   +   +  IG  V+D +VV + +     +    +S ++    
Sbjct: 378 IIGTFIFFIPLGFTINTLTLFGFVLAIGIVVDDAIVVVEAV--QHYIDEKGMSPQEATVH 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
           ++ +     +  ++      +P+    G V      FAI +A  ++++A  ++ +   +
Sbjct: 436 AMRDISAPVIAIALILAAVFVPVGFIPGIVGRLYQQFAITIAISVMISAFVALSLTPAL 494


>gi|22450143|emb|CAD44526.1| protein-export membrane protein SecF [Streptomyces galbus]
          Length = 354

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 74/276 (26%), Positives = 127/276 (46%), Gaps = 11/276 (3%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
              G+SIL +I +I  L   GLN GI+F+GG            ++      +        
Sbjct: 16  IWYGVSILITITAILGLAVRGLNMGIEFQGGAVFTTPTKMSTSVAKAGGVRQRGLRHQAV 75

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            Q         +R+Q    D+    ++ + + K +            ++VGP    ++  
Sbjct: 76  VQELGNG---SLRIQIAGFDTAQSDKIKQELAKDL---NLDPEKLAADLVGPSWGEQIAS 129

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
           K   G+ IS + ++IY+ I F+      A+  LI DIT T G +     E     V  +L
Sbjct: 130 KAWQGLAISMVLVVIYLAIAFECVHGRRALVALIHDITITTGIYPW-SFEVTPGTVIGLL 188

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           T++GYS+ D VVV+D +++  +  T     ++ D+ ++SIN TL RS+ T++ A + V  
Sbjct: 189 TILGYSLYDTVVVFDSLKEQTRDITKQTRFTYTDIANRSINGTLVRSINTTVVALLPVAG 248

Query: 786 MAVWGGSVI-GSFAIPMAFGIVVAASSSIFIAAPIL 820
           +   GG  +    ++ +   +   A SSIFIA P+L
Sbjct: 249 LLFIGGGFLGYDISLSLFV-LAAGAYSSIFIATPLL 283


>gi|228470238|ref|ZP_04055145.1| AcrB/AcrD/AcrF family protein [Porphyromonas uenonis 60-3]
 gi|228308189|gb|EEK17052.1| AcrB/AcrD/AcrF family protein [Porphyromonas uenonis 60-3]
          Length = 1040

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/680 (10%), Positives = 190/680 (27%), Gaps = 50/680 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++++  +  +GL       L +  +D  P       +                 
Sbjct: 9   RRPVTTIMIFVGVVVLGLFA-----LTRLPIDLLPDMQVNRIM---------IVTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +      + + +          ++  + +TL   +    E+  +     +  
Sbjct: 55  APEEVENNVTKPIQNVLNGINGVKHITSQSKENVSVVTLELREGLDIESAINDTRDKISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L        ++     +I I++     D       +       Q I  +G  +   
Sbjct: 115 ITEALPDGAGTPNIIKFGMDDIPILMLSIKSDASSKSLYKILN---DQLITPLGRIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+    DP +L     T   +S    + N +       +   + S     
Sbjct: 172 GVNLLGARQRQINVYCDPHKLESYGITVGDVSNLIAVANRNVSAGSMNLETSKISLRAIG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  ++  + +                       G +  +     ++           
Sbjct: 232 EIVDPKQLEELPITSF--------------------GGQTIYLRDVASVVDGDPEQQTLS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +   ++  +     +        +           V        + S + 
Sbjct: 272 YVDNQRGAMLMLMKQSGANTVQVNKRVLKALPQIVKNLPSDIKIEVVMDQSDFIVRSINS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   +V+ ++ + +   +   +   +I ++++     L L G +L + S++ + 
Sbjct: 332 LSSTIAITFCVVMFIVLLFLGRWRATFIIVLTIPISLLSAFIYLLLTGNSLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E I     +      +     +    ++  S +T L   + +    
Sbjct: 392 IAIGMVVDDAIVVLENITNHIERGSYPKQAAVHATNEVALSVIASTLTMLAVFLPMVMMQ 451

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------SIDINPL 528
           G      R     + + +++S   A+++   +   ++R  + +              + +
Sbjct: 452 GMAGLLFRQLGWIVSIVMIVSTICALALTPTLCAHMLRANRQRQEGRVAQKILRPFNDFI 511

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  L         +R ++  VG+S+   + S+ L       +      G          
Sbjct: 512 QRLTLFYQRTLAWVLRHKWLTVGLSLAIFVLSLTLGSLVKTEFMPQGDSGYIFVKAYYPV 571

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                           +   +  +         Q     S A T   +     ++  + L
Sbjct: 572 GTTIDRPLAEGHRLTDEWRKKYPEIAMLQFSTGQADAFQSGASTLAQDNADNILSFSIKL 631

Query: 649 STIQNTEIVGPKISRELIRK 668
                      +++ E+ R 
Sbjct: 632 VEANQRTRSTQEVAAEIRRD 651



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 76/245 (31%), Gaps = 10/245 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R     +            +      L           +V + V K + +IV       
Sbjct: 254 LRDVASVVDGDPEQQTLSYVDNQRGAMLMLMKQSGANTVQVNKRVLKALPQIVKNLPSDI 313

Query: 654 TEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              V    S  ++R          I   + M I +    +W      + T+ + +     
Sbjct: 314 KIEVVMDQSDFIVRSINSLSSTIAITFCVVMFIVLLFLGRWRATFIIVLTIPISLLSAFI 373

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           +  L G   N+ +++++   IG  V+D +VV + +             +     + NE  
Sbjct: 374 YLLLTGNSLNIISLSSLSIAIGMVVDDAIVVLENI---TNHIERGSYPKQAAVHATNEVA 430

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              + +++      LPM +  G            ++  ++V+   ++ +   +   +   
Sbjct: 431 LSVIASTLTMLAVFLPMVMMQGMAGLLFRQLGWIVSIVMIVSTICALALTPTLCAHMLRA 490

Query: 827 RAKNA 831
             +  
Sbjct: 491 NRQRQ 495



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 53/138 (38%), Gaps = 6/138 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + ++    T  +    L G+  ++ A    + L+G  V + +V+ D     +
Sbjct: 888  SLASPFVIMFSVPFAFTGVILGLLLTGVPLSIIAFIGAIMLVGIVVKNGIVLID---YTI 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S R  +  +    L   + T++     ++PMA+    G  +     + +AFG+
Sbjct: 945  LNRERGMSVRTALLHAGASRLRPVLMTTLTTVFGMIPMAIGIGEGSEMWQPMGVTVAFGL 1004

Query: 806  VVAASSSIFIAAPILLFI 823
             ++   ++ +   I   +
Sbjct: 1005 TISTLVTLLLIPCIYALV 1022


>gi|157413296|ref|YP_001484162.1| preprotein translocase subunit SecD [Prochlorococcus marinus str.
           MIT 9215]
 gi|157387871|gb|ABV50576.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9215]
          Length = 489

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 134/530 (25%), Positives = 227/530 (42%), Gaps = 66/530 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R   WL  +  ++     +  L N+                 + LGLDL+GGS L L++ 
Sbjct: 3   RRQGWLFFIIFLLTL--SVYLLINY----------------PLQLGLDLQGGSQLTLQII 44

Query: 61  -DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLF 118
            +E       L+  +  +   +   G+   +++    +++ L     +     +  +   
Sbjct: 45  KEEGKVTRDELEAVNSVIDRRVNNLGVSESNLQTLGGDQLILELPGEQNPLVASRVLGKT 104

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                                        +Q          ++     I++ I++   +E
Sbjct: 105 ALLEFR-----------------------TQKEGTSTDLKTLQLQRFSIKELIEKYSSTE 141

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
            +                 D + L+ + G    +       + S   F   +   +  + 
Sbjct: 142 KSQY---------------DDNFLKIIEGDLKVIEQELNYSSTSNDLFGKLIEIKKYINN 186

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL---- 294
               +  K ++SG  L  A    +       V ++F   G  +F E+T+   G       
Sbjct: 187 EITNLFIKTDLSGKDLINAGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGTNQLLAI 246

Query: 295 ---AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                 +    +     N  I  G A ISGNF+ E A  L   L+ GSLP+ + IVE   
Sbjct: 247 ILDGESISEASVGNQFANTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNT 306

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +GA LGS +I K   A ++GL+ + +FMI  Y   G V+  S+ L     LAL SL+  T
Sbjct: 307 IGALLGSKNILKSLYAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLALYSLIPVT 366

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP I+G++L IG+AVD+NIL+ ERIREE     ++  S+D GF RA S+I D +IT L
Sbjct: 367 LTLPGISGLILSIGMAVDANILIFERIREELYDGNTLTRSIDSGFQRANSSIIDGHITTL 426

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           ++  VLF  G   V+GFA T+G+ +LIS+FT+++  + ++ F   Y+ ++
Sbjct: 427 LSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLR 476



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 99/259 (38%), Gaps = 4/259 (1%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +  G     +  +      ++   L+   I + S  N               G+  A+  
Sbjct: 224 NSGGEKFAEITKSIAGTNQLLAIILDGESISEASVGNQFANTGITGGSATISGNFSAENA 283

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
               V+ K   +     I  T  +G  +  + I K +   I   I + I++   ++    
Sbjct: 284 RELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSLYAAISGLIFVGIFMIFNYRI-LG 342

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             ++ +L+L     L  ++L  +   L  ++ ++  IG +V+  +++++R+R+ +     
Sbjct: 343 FVSVLSLVLYGFFNLALYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYD--- 399

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             +    ID          +   +   +S   + + G + +  FA  +  G++++  +S+
Sbjct: 400 GNTLTRSIDSGFQRANSSIIDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSL 459

Query: 814 FIAAPILLFIYDWRAKNAR 832
             +  IL F   +++   +
Sbjct: 460 NCSKTILRFFTTYQSLRQK 478


>gi|310766577|gb|ADP11527.1| Multidrug resistance protein [Erwinia sp. Ejp617]
          Length = 1051

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/531 (11%), Positives = 148/531 (27%), Gaps = 38/531 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L   +   G+               +P+                   +    
Sbjct: 9   QRPVATILLMVAVLASGIFAYGMLSTSALPQVDYPTIQ--------------VTTLYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +        S     + ITL F+     +    +V   +  
Sbjct: 55  SPDVMASSVTAPLERQLGQMSGLSQMTSSSSSGSSVITLQFSLELSLDVAEQEVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            NS L  D              S  ++            +    +  +   ++       
Sbjct: 115 ANSLLPTDLPNPPTYKKVNPADSAAITLAASSDTQP-LTKVQDMVNTRIALRLSQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +      +    DP+ L     T   ++      N +     F  ++   +     
Sbjct: 174 RVTLAGGHQPAIRVRIDPNALAAHGLTLEDVNTLVSNSNVNGSKGGFDGQYHSVTIDAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                      ++                 I +         
Sbjct: 234 QLRSAAQ--------------------YGNLILTYQNGAALRLHDVAKIDEAAENSYQSA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +   +    ++        L+A         V          S S 
Sbjct: 274 WANSSPAIVISVQRQPGANVIAVVDAIKAQLPTLQAALPDGVKLTVLSDRTQTIRASISD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   LV++V F+ +      L+   ++ L+++ T  ++ L G +L   S+  + 
Sbjct: 334 VQFELMLSIALVVMVTFLFLRNVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  +D  I+V E I     + ++   +   G ++   TI     + +   + L F G
Sbjct: 394 IATGFVIDDAIVVVENISRRLEQGETPMEAALKGAAQIGFTIISLTFSLIAVLIPLLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
              G   R FAIT+ +SIL+SM  ++++   +  ++++    +        
Sbjct: 454 DVVGRLFREFAITLAVSILVSMVISLTLTPMLCAYLLQPVPPQRQSRFYRK 504



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 65/156 (41%), Gaps = 7/156 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+ ++++R      L     + L +  T G   L G   N  ++ A+    
Sbjct: 338 LMLSIALVVMVTFLFLR-NVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ ++D +VV + +    +      +  +   K   +     +  + +    ++P+   G
Sbjct: 397 GFVIDDAIVVVENI---SRRLEQGETPMEAALKGAAQIGFTIISLTFSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              G +   FAI +A  I+V+   S+ +   +  ++
Sbjct: 454 DVVGRLFREFAITLAVSILVSMVISLTLTPMLCAYL 489



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +   D  +  +  + +      +   S I           R      +  +
Sbjct: 820  NQFPAVTVSFNLNDGYSLEQAQQAIGDVGRALAQPSGITLRWQGETAAFRNATGNTLWLI 879

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + M + + I ++ +   +  ++TL       L    L   EF+L A+  V+ LIG 
Sbjct: 880  LAALLTMYVVLGILYESFIHPVTILSTLPSAAVGALLTLLLCNTEFSLIALIGVILLIGI 939

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   +        +S RD I ++        + T+MAA +  LP+ +    
Sbjct: 940  VKKNAIMMIDFALE--AENKQQLSPRDAIHQACLLRFRPILMTTMAALLGALPLMLASGS 997

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     + +  G++ +   ++F + P++   +D  A   +
Sbjct: 998  GAELRQPLGLVIVGGLIFSQVLTLF-STPVIYLWFDRLATRGK 1039


>gi|241764817|ref|ZP_04762823.1| acriflavin resistance protein [Acidovorax delafieldii 2AN]
 gi|241365649|gb|EER60369.1| acriflavin resistance protein [Acidovorax delafieldii 2AN]
          Length = 1088

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 57/561 (10%), Positives = 152/561 (27%), Gaps = 63/561 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N  +  ++   I  +GL         +  +D+FP       +           +    
Sbjct: 8   LKNPVFATMVMLAIVVLGLFS-----YQRLKVDQFPDIDFPVVV---------VTVDYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + +           +    + + F         A+ V   + 
Sbjct: 54  ASPEIVESEVTKKIEEGVNSIAGVNALTSRSYEGTAVVIIEFQLHIDGRRAAEDVREKVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-------------------------- 154
            V   L  + K+  ++        +       D                           
Sbjct: 114 TVRPTLRTEVKEPRVLRFDPASRPVWSLAVLPDAQASVKGRQGADSAAAASPADAGAASG 173

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
             + A+E +    +    ++                 ++    +P  L     T  ++  
Sbjct: 174 GRNSAVELTTWAEQILKKRLENVRGVGAVNLVGATKREINIYLNPQALEAFGVTPDQVVA 233

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
                N                      ++   +                       I  
Sbjct: 234 AVRNENQDLPVGAIRSLAQERVVQIDARMQRPEDFG--------------------RIIV 273

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
                          +      V    +                 +    ++      A 
Sbjct: 274 TRKNGAPVRVEQVARVQDGAQEVESLALYNGERTLLLSVQKSQGENTIEVVDGLNAAVAE 333

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           +RA   P         +      + +  + T    A L ++++F+ +   +  ++   ++
Sbjct: 334 MRAQLPPGVRLETIGDSARPIRVAVNNVRQTLIEGALLTVLIVFLFLNSWRSTVITGLTL 393

Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
            + +I T   +++ G T+ + ++  + L +GL +D  I+V E I    +  +  + +   
Sbjct: 394 PIALIGTFLFMNMFGFTINMITLMALSLCVGLLIDDAIVVRENIVRHVQMGKGAYAAALD 453

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMM 511
           G       +  + ++ +   + + F G   G     F +T+  ++LISMF + ++   + 
Sbjct: 454 GTQEIGLAVLATTLSIVAVFLPIGFMGGIIGKFFHEFGVTIVAAVLISMFVSFTLDPMLS 513

Query: 512 IFIIRYKKMKSIDINPLSRFF 532
                       + N    F+
Sbjct: 514 SIWHDPSIHAHGERNRPVTFY 534



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 9/267 (3%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +         +  G I +      PV +  V    +  Q  +            L   + 
Sbjct: 256 VQIDARMQRPEDFGRIIVTRKNGAPVRVEQVARVQDGAQEVESLALYNGERTLLLSVQKS 315

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLI 682
           Q  +++     L     ++   +P      T     +  R  +      +I  + + +LI
Sbjct: 316 QGENTIEVVDGLNAAVAEMRAQLPPGVRLETIGDSARPIRVAVNNVRQTLIEGALLTVLI 375

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                  W   +    TL + +  T  F  +FG   N+  + A+   +G  ++D +VV  
Sbjct: 376 VFLFLNSWRSTVITGLTLPIALIGTFLFMNMFGFTINMITLMALSLCVGLLIDDAIVV-- 433

Query: 743 RMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFA 798
             R+N+  +                E     + T+++     LP+   GG +      F 
Sbjct: 434 --RENIVRHVQMGKGAYAAALDGTQEIGLAVLATTLSIVAVFLPIGFMGGIIGKFFHEFG 491

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYD 825
           + +   ++++   S  +   +    +D
Sbjct: 492 VTIVAAVLISMFVSFTLDPMLSSIWHD 518



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 71/200 (35%), Gaps = 11/200 (5%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                      +   V   +KK +  +      +       K   E     I  ++++ + 
Sbjct: 847  VAVTANVAERSAGEVSNDIKKALDSLAFPPGYRYQFGGSTKNMAESFGYAISALVLAIVF 906

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + +  +F+ +   L  +T+L L +   +    +F    ++ ++  V+ L+G    + +
Sbjct: 907  IYMILASQFRSFLQPLALMTSLPLTLIGVVLALLMFRSTLSMFSIIGVVMLMGLVTKNAI 966

Query: 739  VVYD---RMRK----NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
            ++ D   R R+            +   + +  +    L   + T++A    ++P+A    
Sbjct: 967  LLVDFAIRAREEHIDEAGRAVAGLPRAEALLLAARVRLRPILMTTLAMIFGMVPLAFALS 1026

Query: 790  -GGSVIGSFAIPMAFGIVVA 808
             G          +  G++ +
Sbjct: 1027 EGSEQRAPMGQAVIGGVITS 1046


>gi|239637807|ref|ZP_04678769.1| mmpl domain protein [Staphylococcus warneri L37603]
 gi|239596565|gb|EEQ79100.1| mmpl domain protein [Staphylococcus warneri L37603]
          Length = 896

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 92/664 (13%), Positives = 203/664 (30%), Gaps = 63/664 (9%)

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
              P       M G++ L  +D          E + + +   +   D  T K        
Sbjct: 36  ISAPKFDSNITMNGLKSLDTNDKMSKEFHQDSEKASMKIVIHSDKKDGITDKSTKKDIEK 95

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
            +   +  +    N+  P             +        +       T         + 
Sbjct: 96  ALDNIKQDDDYVQNVSNPYETNQVNDDNDTAIATVNYVVNQ-------TSLKDSSKKIID 148

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           R        + V+        G       +  +      I+L +         +   S  
Sbjct: 149 REMKDVKDDHNVQIEQAQGGSGGSEPGGNSEIVGIVTAFIILLITFGSLIAAGMPIVSAI 208

Query: 396 LNVILTLALLSLLGATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           + +  ++ +++LL     +P+      +++G+ + +D ++ +  R +E  +K      S+
Sbjct: 209 IGLGSSIGIIALLTNVFDIPNFTLTLAVMIGLAVGIDYSLFILFRYKEIRKKGTPPVESI 268

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
            +    A S +  + +T +IA   L   G   +        +S+L ++F A++++ A++ 
Sbjct: 269 ALAVGTAGSAVIFAGLTVMIAVCGLSLVGIDFLAVMGFASAISVLFAVFAALTLLPALIS 328

Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL--- 569
              +  K+K                  +           I ++ +I  I  +        
Sbjct: 329 VFHKRIKIKDKPEKSKDPKNHPWAKFVVGKPVLAIIISLIILIAAIIPISGMRLGMPDDS 388

Query: 570 -----------------NYGIDFKGGIQLGVLANR-------PVDLSVVRSNLESLQIGD 605
                            N+G  + G I + V             DL+ +R +L+ +   D
Sbjct: 389 LKPNDSSAHKAYNLVTDNFGAGYNGQIAMLVNTKDGGSKKDIESDLNSMRKDLKDMDNVD 448

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
              +    + N    +   P D        ++V              +        S   
Sbjct: 449 TVEKPQLNDNNHYALISIIPEDGPNAQSTSDLVYDLRDYNKQAKEKYDFNTEVTGQSVIN 508

Query: 666 IRKG--------IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF------ 711
           I           +   +I  +A ++ +++       L A+   +L +  TLGF       
Sbjct: 509 IDMAEKLNNAIPVFAGVIVLLAFVLLVFVFRSILVPLKAVLGFVLSLMATLGFTTLVMQD 568

Query: 712 ----ALFGIEFNLT-----AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                LFG+E          V  +  L G +++ ++ +  R+ +    Y+ +      I 
Sbjct: 569 GFLGGLFGVENTGPLLAFLPVITIGLLFGLAIDYELFLMTRVHEE---YSKTGDNDHSIR 625

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             I E+    V  ++  F   +         I S  I +AFG++  A        P L  
Sbjct: 626 VGIKESGPVIVAAALIMFSVFIAFVFQDDMQIKSMGISLAFGVLFDAFVVRMTLIPALTK 685

Query: 823 IYDW 826
           ++  
Sbjct: 686 LFGK 689



 Score = 92.4 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 20/252 (7%), Positives = 75/252 (29%), Gaps = 7/252 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + +D      +              + + +  +       +  +     + +  +  
Sbjct: 92  DIEKALDNIKQDDDYVQNVSNPYETNQVNDDNDTAIATVNYVVNQTSLKDSSKKIIDREM 151

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
           + V        E                 V I    +++ I        A   I + I+ 
Sbjct: 152 KDVKDDHNVQIEQAQGGSGGSEPGGNSEIVGIVTAFIILLITF-GSLIAAGMPIVSAIIG 210

Query: 704 ITKTLGFFALFGIEFNLT--AVAAVLTL-IGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           +  ++G  AL    F++    +   + + +   ++  + +  R ++   +        + 
Sbjct: 211 LGSSIGIIALLTNVFDIPNFTLTLAVMIGLAVGIDYSLFILFRYKE---IRKKGTPPVES 267

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I  ++       ++  +   I+V  +++ G   +       A  ++ A  +++ +   ++
Sbjct: 268 IALAVGTAGSAVIFAGLTVMIAVCGLSLVGIDFLAVMGFASAISVLFAVFAALTLLPALI 327

Query: 821 LFIYDWRAKNAR 832
              +       +
Sbjct: 328 SVFHKRIKIKDK 339


>gi|86148767|ref|ZP_01067038.1| putative multidrug resistance protein [Vibrio sp. MED222]
 gi|85833445|gb|EAQ51632.1| putative multidrug resistance protein [Vibrio sp. MED222]
          Length = 1040

 Score =  152 bits (384), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/609 (12%), Positives = 179/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAIF-----KMQVREYPEMTNTVVT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S    ++ IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSSSVLGKSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D+++S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELVSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DPS++  +  T + +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPSKMAAIGLTASDVMTVLNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                     ++                 +    +  +   
Sbjct: 233 QVSNTEELE--------------------NLVVKSGEGEIIRLSDIAKVSLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLELLPQLEKNLPSNISMNVMYDSTIAINESIQE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VLIV+ + +   +  L+   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTILEAALIVLIVITLFLGSFRAVLIPIITIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIAMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +        K  + +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKAHAEPSKFEQKVHSVLDGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +         +     I+F+   +   F        + KG I L   A    +L  
Sbjct: 513 YERMLGAVMQHRPVFIGFAIIVFASLPLLFKFIPSELAPSEDKGVIMLMGTAPSNANLDF 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 MQNTMNDVN 581



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 82/235 (34%), Gaps = 7/235 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + LS +                   E            + +     +  +  ++ + +
Sbjct: 251 EIIRLSDIAKVSLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELLPQLEKNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I++ I  ++ +A+ +LI I +    +   L  I T+ L + 
Sbjct: 311 PSNISMNVMYDSTIAINESIQEVIKTILEAALIVLIVITLFLGSFRAVLIPIITIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++ 
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIAMMGGITGSLFKEFALTLAGSVFVSGIVALTLSP 482



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 68/781 (8%), Positives = 211/781 (27%), Gaps = 34/781 (4%)

Query: 75   DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
            +EL + + K G     + ++ +   +S   S      +      +    +        N+
Sbjct: 238  EELENLVVKSG--EGEIIRLSDIAKVSLEKSHDVYRASANGQEAVVAAINAAPSANPINI 295

Query: 135  LVTTTEKEISI---VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
                 E    +   + S  +++ +    I  +  I       +  +   +  +       
Sbjct: 296  AADVLELLPQLEKNLPSNISMNVMYDSTIAINESIQEVIKTILEAALIVLIVITLFLGSF 355

Query: 192  QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK--GFMFGVRFLRDSDGNQYLVEDKVEI 249
            +       +    L+G  A +        N       +  +  + D         D+   
Sbjct: 356  RAVLIPIITIPLSLIG-VAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDRHIK 414

Query: 250  SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             G     A      +   PV+ ++         +       G   ++  +  +  A  + 
Sbjct: 415  LGESPFRAAIIGTREIAVPVIAMTLTLGA---VYAPIAMMGGITGSLFKEFALTLAGSVF 471

Query: 310  QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +            +               +   L+ +  R                   
Sbjct: 472  VSGIVALTLSPMMCSKMLKAHAEPSKFEQKVHSVLDGMTNRYERMLGAVMQHRPVFIGFA 531

Query: 370  AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
              +   +  +          ++    + ++ T    + L       +    +L     V 
Sbjct: 532  IIVFASLPLLFKFIPSELAPSEDKGVIMLMGTAPSNANLDFMQNTMNDVNQILSDQPEVA 591

Query: 430  SNILVNERIREENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
               +             +      +   S++       N+   +  + +  F    + G 
Sbjct: 592  YAQVFTGVPNANQAFGIASMVPWSEREASQSDVANRVGNLVKDVPGMAVTAFQMPELPGA 651

Query: 489  AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
               + +  +I+   +   +  +   I+       + +            + I   + +  
Sbjct: 652  GSGLPIQFVITTPNSFESLFQITTDILADVSSNPLFVYSDLDLNYDSATMKINIDKDKAG 711

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGI---QLGVLANRPVDLSVVRSNLESLQIGD 605
              G+++     ++  + + G    ID  G        V     ++   + +       G+
Sbjct: 712  AYGVTMQDIGITLGTMMSDGYVNRIDLNGRSYEVIPQVERKFRLNPESMNNYYVRAADGN 771

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI------------QN 653
                      + +   +  P  +   +  +  V      +                   N
Sbjct: 772  AVPLGSLITIDVVAEPRSLPHFNQLNSATIGAVPAPGAAMGDAIAWFEDTAANKLPSGYN 831

Query: 654  TEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFF 711
             + +G           +     ++   + + + I+F+     L  + ++ L I   L   
Sbjct: 832  HDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVPLAICGALIAL 891

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            A      N+ +   ++TL+G      +++ +  ++       +    + + ++    L  
Sbjct: 892  AWGAATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNQKTR--IEAVMEAAKVRLRP 949

Query: 772  SVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRA 828
             + T+ A    ++P+    G      F+I +    G+ +    ++F+   I  ++ +   
Sbjct: 950  ILMTTAAMIAGLIPLMYASGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLAEKHK 1009

Query: 829  K 829
             
Sbjct: 1010 P 1010


>gi|160888593|ref|ZP_02069596.1| hypothetical protein BACUNI_01010 [Bacteroides uniformis ATCC 8492]
 gi|156861907|gb|EDO55338.1| hypothetical protein BACUNI_01010 [Bacteroides uniformis ATCC 8492]
          Length = 1139

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 68/521 (13%), Positives = 147/521 (28%), Gaps = 44/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGVI-----GLATLPITQYPDIAPPT-------------VSVSATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S          I++ F      +  A  V  
Sbjct: 51  QGANAQTVLNSVIAPLEDQINGVENMMYMSSSATNSGSGDISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +++     ++   +            I ++   
Sbjct: 111 RVSMAQGLLPAEVTKIGVTTRKRQTSMLMVFSIYDEKDQYNIEFLENYANINLIPEVKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +     P  + Q       +       N        G    R + 
Sbjct: 171 NGVGDAMVLG-QDYSMRIWLKPDVMAQYKLIPNDVVAALSEQNIEAAPGQLGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +T +    +                N+       
Sbjct: 227 TYQYTLRYKGRL-------------QQTTEFENIVIKALENGEILRLKDVANVELGRLSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               ++        I    A  +   TI     L     +         + +        
Sbjct: 274 GFNNMVNGHKAVSCIIFQMAGSNATQTISDIEALLDDYSSKLPAGLKINIAQSANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVIKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   V 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARTASIDAMSELGGAIVSITLVMMSVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F G   G   R F +TM ++I  S   A+++  A+    
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGFSALNALTLSPALCAIF 494



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/309 (10%), Positives = 87/309 (28%), Gaps = 28/309 (9%)

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                      +         ++     +   + +    + V     +       +++ + 
Sbjct: 818  QGYYGGLYASNFNSFGKMYRVMVQAEPDATKNMETLQSIKVRNGNEMAPITQFISIKKVY 877

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
              D+  +        ++        S    + +  V ++             E+ G    
Sbjct: 878  GPDVISRFNLYTSMKVMVAPASGYTSGQALQAIAEVAQENLPAG-----FGYELGGMARE 932

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALFG 715
                     G+I     + +Y+ +      +   L  + +    L+       G  AL  
Sbjct: 933  EAETSGSTTGLIFILCFVFVYLLLSAQYESYILPLSVLLSVPFGLLGSFLFVGGIGALGS 992

Query: 716  IEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            I      +           A++ L+G    + +++ +   +  ++    +S         
Sbjct: 993  IPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFALERRRM---GMSITWAAVLGA 1049

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS+A  + +LP+      G +   +       G+++     IFI   + + 
Sbjct: 1050 AARLRPILMTSLAMIVGLLPLMFASGAGANGNRTLGTSAIGGMLIGMILQIFIVPALFVA 1109

Query: 823  IYDWRAKNA 831
                + K  
Sbjct: 1110 FQYLQEKFK 1118



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 77/211 (36%), Gaps = 6/211 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      +E +    +  +P     N            I + I  +I + I
Sbjct: 288 IIFQMAGSNATQTISDIEALLDDYSSKLPAGLKINIAQSANDFLFASIHEVIKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R     +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SARTASIDAMSELGGAIVSITLVMMSVFVPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F + MA  I  +A +++ ++  +      
Sbjct: 466 RQFGLTMAIAIGFSALNALTLSPALCAIFLK 496


>gi|114767386|ref|ZP_01446189.1| protein-export membrane protein SecF [Pelagibaca bermudensis
           HTCC2601]
 gi|114540503|gb|EAU43581.1| protein-export membrane protein SecF [Roseovarius sp. HTCC2601]
          Length = 156

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/137 (40%), Positives = 90/137 (65%), Gaps = 1/137 (0%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            FA+GA+  L+ D+  T+G F+  GI+F+L  +AA+LT++GYS+ND VVV+DR+R+N+  
Sbjct: 1   QFAVGAVAALVHDVLLTIGVFSEVGIKFDLAIIAALLTIVGYSLNDTVVVFDRVRENLIK 60

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
           Y      ++++  SINETL R++ TS+   +++  +   GG VI  F   M +G+ V   
Sbjct: 61  YKKR-PLKEVLVVSINETLSRTIMTSLTTLLALFALFALGGDVIRGFVFAMIWGVFVGTY 119

Query: 811 SSIFIAAPILLFIYDWR 827
           SSIF+A+ ILL++   R
Sbjct: 120 SSIFVASAILLWLGVKR 136


>gi|330809643|ref|YP_004354105.1| multidrug efflux system transmembrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327377751|gb|AEA69101.1| multidrug efflux system transmembrane protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1034

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/589 (10%), Positives = 159/589 (26%), Gaps = 44/589 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L   I  +G +           +   P       +             L   
Sbjct: 9   KRPVATMLLSFAIMLLGGVS-----FGLLPVSPLPQMDFPVIV---------VQANLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +           Q   ++ L F   R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSFGAIAGVNTMSSRSSQGSTRVILQFDLDRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSLTSDVLKKGQLYDLASTILSQSLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q       +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPHLLNQYGVALDDVRTAVADSNVRRPKGSVEDDQRMWQVQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 +   +    +  
Sbjct: 234 QLEKAKD--------------------YETLIIRYQDGSVLRLKDVAKVTDSVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         L+A         +          +   
Sbjct: 274 FFNNDAAVLLVINRQAGANIIETVNEIKAQLPALQAVLPASVKLNLAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVALVVLVVFLFLGNFRASLIPTLAVPVSLVGTFAVMYLYGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +   G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIDEGVPPMKAAYRGAEEVGFTLLSMNVSLVAVFLSILFMG 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSRFF 532
           G      R F+IT+  SI++S+  ++++   +    ++        +++        R  
Sbjct: 454 GIIESLFREFSITLAASIVVSLVVSLTLTPMLCARWLKPHVPGQENRLQRWSQRLNERMV 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                     +  R   +   ++    ++ L       +      G  +
Sbjct: 514 RGYAISLDWVLHHRRLTLLSLLVTIGVNVALYVVVPKTFMPQQDTGQLI 562



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +  +L     + + +  T     L+G   N  ++ A++   G  V+D +VV + +    +
Sbjct: 356 FRASLIPTLAVPVSLVGTFAVMYLYGFSLNNLSLMALILATGLVVDDAIVVLENI---SR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV 806
                +       +   E     +  +++     L +   GG   S+   F+I +A  IV
Sbjct: 413 HIDEGVPPMKAAYRGAEEVGFTLLSMNVSLVAVFLSILFMGGIIESLFREFSITLAASIV 472

Query: 807 VAASSSIFIAAPILLFIYD 825
           V+   S+ +   +      
Sbjct: 473 VSLVVSLTLTPMLCARWLK 491


>gi|120613295|ref|YP_972973.1| acriflavin resistance protein [Acidovorax citrulli AAC00-1]
 gi|120591759|gb|ABM35199.1| acriflavin resistance protein [Acidovorax citrulli AAC00-1]
          Length = 1025

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/613 (12%), Positives = 176/613 (28%), Gaps = 39/613 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN     +L+ ++   GLL           +  FP       +             L   
Sbjct: 9   RNPIPAAMLFVLLTFAGLLS-----FRAMKVQNFPDMDLPVVM---------VTAALPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   +  +       ++      I   +   +  +   D V   +  
Sbjct: 55  APGQLETDVARKIENAIATTQGLKHITTTIVDGTATIAAEYRLEKPVQEAVDDVRSAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + +  D +  ++         I+      D++   A   S  +      ++       
Sbjct: 115 VRADMPADLRDPIVTKLELSSQPILAFAIASDRMDDQA--LSWFVDETLTRRLLAVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    DP RL+ L  T A +S    L      G    +           
Sbjct: 173 AVGRVGGVQREVRVAIDPLRLQALGATAADVSRQLRLVQTESAGGRTDLGGAEQPVRTIA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    EI+ + +                       G           +   +A    G 
Sbjct: 233 TVRTAQEIAALDI--------------------PLSGGGHVRLDRIATVTDTVAEPRTGA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     S     S              L A    + L       V         
Sbjct: 273 LLDGKPVIGFEVSRSRGASEVEVGAGVQRALDQLVAEHPDLHLTR-TVDFVEIASDEYDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +  +V+  ++ L+V+     + +LG ++ + ++  + 
Sbjct: 332 SMHLLYEGAILAVVVVWLFLRNWRATIVSAVALPLSVLPAFIGMYMLGFSINIITLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEVENIVRHLRMGKTPYQAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G   R F    G +  +++F ++ + R +   +  Y            R+       +  
Sbjct: 452 GIPGRFFKQ-FGWTAALAVFASLVVARLLTPMMAAYILKPLSGEEKEPRWLSGYMRASAW 510

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSNLES 600
            +R R   V  ++LF + SI L+      +   D     Q+ +       L+  R+ +  
Sbjct: 511 ALRHRVLTVIGALLFFVASIALIPLLPSGFIPPDDNAQTQVNLELPPGTRLAETRAAVTQ 570

Query: 601 LQIGDISFQNFDG 613
                    +   
Sbjct: 571 ATERVQKVGHVRS 583



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 77/253 (30%), Gaps = 10/253 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +     V L  + +  +++                    + +    V     ++    
Sbjct: 245 IPLSGGGHVRLDRIATVTDTVAEPRTGALLDGKPVIGFEVSRSRGASEVEVGAGVQRALD 304

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           ++    P   +  T       S E      +    + +A+++       W   + +   L
Sbjct: 305 QLVAEHPDLHLTRTVDFVEIASDEYDSSMHLLYEGAILAVVVVWLFLRNWRATIVSAVAL 364

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +        + G   N+  + A+  ++G  V+D +V  + +   ++      +    
Sbjct: 365 PLSVLPAFIGMYMLGFSINIITLLALSLVVGILVDDAIVEVENI---VRHLRMGKTPYQA 421

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             ++ +E     + T+       LP A   G        F    A  +     +S+ +A 
Sbjct: 422 AMEAADEIGLAVIATTFTLIAVFLPTAFMSGIPGRFFKQFGWTAALAV----FASLVVAR 477

Query: 818 PILLFIYDWRAKN 830
            +   +  +  K 
Sbjct: 478 LLTPMMAAYILKP 490



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/177 (14%), Positives = 77/177 (43%), Gaps = 3/177 (1%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
            V E V++  +     ++++  ++   ++  EL     + ++   + + + + + FK + 
Sbjct: 811 EVTEAVRQLPSVRQMPASVRLIDVGDAEMMGELFASFGLAMLTGVVCIYLVLVLLFKDFL 870

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  +  L L +        + G  F++ ++  ++ L+G +  + +++ +     +   
Sbjct: 871 QPVTILMALPLSLGGAFVGLLIAGKSFSMPSLIGLIMLMGIATKNSILLVE--YAIVARR 928

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
              +S  D +  + ++     + T++A    +LP+A+  G    SF  PMA  ++  
Sbjct: 929 DQGMSRWDALLDACHKRARPIIMTTLAMGAGMLPIAMAWGGADMSFRSPMAVAVIGG 985


>gi|50084349|ref|YP_045859.1| putative RND efflux transporter [Acinetobacter sp. ADP1]
 gi|49530325|emb|CAG68037.1| putative RND efflux transporter [Acinetobacter sp. ADP1]
          Length = 1031

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/633 (9%), Positives = 169/633 (26%), Gaps = 40/633 (6%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +        +     + ITL F  S     +  +V   L   
Sbjct: 56  PDTVQRTITAPLEREMGKIAGLKQMSSNSAVGASVITLQFELSAELGVVEQEVQSALSTA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +SKL  D   + +          V++   +             +  +   ++        
Sbjct: 116 SSKLPNDLPTSPVYRKVNPADVPVIT-LAVSSETLPLTTVYDMVDTRIAQKLSQLSGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  + +P+ L     +   +       N ++    F   +          
Sbjct: 175 VSLVGGQRPAIRVQMNPTALAAYKISAEDVRSVINSANANQPKGSFDGPY---------- 224

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                           AN    +     ++                 + +          
Sbjct: 225 ----------RTTMLDANDQMGSIAEYENLILRWNNGAPIRLKDVSQVKQGSEDRYMAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    +   L+          V      +   S    
Sbjct: 275 ADRESAILINVQRQPNANVIQVVDQIKNILPELQKNLPENVKIRVLTDRTESIRSSIGDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        LV++V F+ +      ++   ++ L++I T  L+  LG ++   ++  + +
Sbjct: 335 QKELVFAVCLVVMVTFLFLRNLSATIIPSIAVPLSIIGTFVLMYFLGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I        S+  +   G      T+    I+ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMLENITRHREAGASLLDAALKGSKEIGFTLISLTISLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIPDC 537
             G     FA+T+  +I +S+  ++++   M  ++   +    K    +           
Sbjct: 455 VVGRLFHEFAVTLAAAIALSLVVSLTLTPMMCAYLLKNKKHNQKHSRWSLDKIIDRYAKA 514

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +   F         +     +  +         + +   G IQ+   A   +    +   
Sbjct: 515 LQWVFKHQPLMLGIMLSTIVLAGVLYWMIPKGFFPVQDSGVIQVVTEAPDDISFQTMSER 574

Query: 598 LESLQIGDISFQNFDG--------------EKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +++    +   +                     ++       +  +  +V+  ++ ++ 
Sbjct: 575 QQNVAAQILKDPSVASLSSFTGIDANNPKLSNGRILINLKPHAERDSAQQVINRLRDQLK 634

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
           ++  +              +    +  V +  +
Sbjct: 635 DVPGIHAWMQPVQELSIEDKISRTQYQVSLSAA 667



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 89/282 (31%), Gaps = 15/282 (5%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
           +              N  + +  G  + +     V        + +    + +       
Sbjct: 228 MLDANDQMGSIAEYENLILRWNNGAPIRLKDVSQVKQGSEDRYMAAWADRESAILINVQR 287

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +     +Q           + + + + +   V     ++       + +EL       V 
Sbjct: 288 QPNANVIQVVDQIKNILPELQKNLPENVKIRVLTDRTESIRSSIGDVQKEL-------VF 340

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              + +++           +     + L I  T       G   N   + A+    G+ V
Sbjct: 341 AVCLVVMVTFLFLRNLSATIIPSIAVPLSIIGTFVLMYFLGFSINNLTLMALTIATGFVV 400

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +D +V+ + +    +      S  D   K   E +G ++ +   + I+VL   ++ G V+
Sbjct: 401 DDAIVMLENI---TRHREAGASLLDAALKGSKE-IGFTLISLTISLIAVLIPLLFMGDVV 456

Query: 795 ----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 FA+ +A  I ++   S+ +   +  ++   +  N +
Sbjct: 457 GRLFHEFAVTLAAAIALSLVVSLTLTPMMCAYLLKNKKHNQK 498



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 76/198 (38%), Gaps = 7/198 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              ++ + +   ++   + I  +            +     VI + + M I + I ++ + 
Sbjct: 815  EAIQAIDRVKQQLKLPAEINLSLQGAAAAFENSQQHTFWLVIAAIVTMYIVLGILYESFI 874

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    +     ++ A+  ++ LIG    + +++ D         
Sbjct: 875  HPITILSTLPSAAIGALLALFMLNQPLDMIALIGIILLIGLVKKNGIMMVD--FALAAQR 932

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +S +  I ++        + T++AA +  +P+ +    G  +     I M  G++++
Sbjct: 933  NEGLSPQQAIYQAALMRFRPILMTTLAALVGAIPLMLASGSGAELRQPLGIVMVGGLILS 992

Query: 809  ASSSIFIAAPILLFIYDW 826
               ++F   P++   +D 
Sbjct: 993  QILTLF-TTPVVYLFFDR 1009


>gi|255531095|ref|YP_003091467.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Pedobacter heparinus DSM 2366]
 gi|255344079|gb|ACU03405.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pedobacter heparinus DSM 2366]
          Length = 1058

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 67/528 (12%), Positives = 142/528 (26%), Gaps = 38/528 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF-LQMYSDELRSFLKK-EGI 86
              + ++P   P               + +            +      L   +   E +
Sbjct: 29  TLPVSQYPEIAPPT-------------VQVSASYQGANADVVMSSVVVPLEEQINGVEDM 75

Query: 87  GVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
              +     +    IT++F      +  A  V   +    S L  +  +  ++T  ++  
Sbjct: 76  TYMTSSAGNDGTATITVNFKLGTNPDLAAVNVQNRVARATSLLPAEVTRAGVITAKKQAS 135

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
           ++++     D                 I QI              +   +     P  + 
Sbjct: 136 NVLIFAIYSDSASYDQKFLQNYANINLIPQIKRINGVGDATAFGLMDYSMRIWLKPEVMA 195

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
                   +S      N       FG +        QY ++    +              
Sbjct: 196 TYGLVPNDISVVLAEQNIEAAPGQFGEQ---GDQSFQYTLKYSGRLKNE----------- 241

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +    I       +         I                       +  A  +   
Sbjct: 242 --TEFSNIIVRTAQNGQVLRLKDIARIELGAQSYSSSVKFNGKPALGIAINQTAGSNAKE 299

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            IE A  +                          S      T      LV +V+F+ +  
Sbjct: 300 VIEGAIKVLDESSVNFPKGVHYTALINVNDFLDASIEKVIHTLIEAFILVFLVVFIFLQD 359

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  L+   S+ + +I T   LSL G T+ L ++  +VL IG+ VD  I+V E +  +  
Sbjct: 360 FRSTLIPAISVPVAIIGTFFFLSLFGFTINLLTLFALVLAIGIVVDDAIVVVEAVHAKLD 419

Query: 444 KNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILIS 499
               S   +           I    +      + + F  G +    + F +T+ ++I++S
Sbjct: 420 HGYTSAKKATIDAMEDITGAIISITLVMAAVFIPVSFIQGSSGVFYKQFGLTLAIAIILS 479

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
              A+++  A+    ++             + F      +   M  R+
Sbjct: 480 AINALTLSPALCALFLKPHAEDHNKPKNFMQRFYTAFNASFDAMTNRY 527



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 67/219 (30%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L       G+  A     + +K    E                   E+        I  
Sbjct: 815  NLFTSIAVTGNPNAGYSSGDALKAVQEEAAIHLPTGYGYEFSGLSREEMSSGSQTIFIFL 874

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               + +Y  +      +   L  + +L + +     F  +F ++ N+     ++ L+G  
Sbjct: 875  LCVIFVYFLLCAQYESYILPLAVLISLPIGLAGVFIFDKIFKVDNNIYTQITLIMLVGLL 934

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ +     +      +S            L   + TS A  + +LP+ +    G
Sbjct: 935  AKNAILIVEFA---VDRRRKGMSIVGAAISGATARLRPILMTSFAFILGLLPLMLSTGVG 991

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +   S       G+++     +F+   + +     + K
Sbjct: 992  AAGNKSIGTGAVGGMLIGTLFGVFVIPALFIVFQSIQEK 1030



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 97/267 (36%), Gaps = 14/267 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + V   +   +  ++              +        + +            V+
Sbjct: 242 TEFSNIIVRTAQNGQVLRLKDIARIELGAQSYSSSVKFNGKPALGIAINQTAGSNAKEVI 301

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWY 691
           E   K + E                ++  L   I K I  +I + I + + ++I    + 
Sbjct: 302 EGAIKVLDESSVNFPKGVHYTALINVNDFLDASIEKVIHTLIEAFILVFLVVFIFLQDFR 361

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L    ++ + I  T  F +LFG   NL  + A++  IG  V+D +VV + +   +   
Sbjct: 362 STLIPAISVPVAIIGTFFFLSLFGFTINLLTLFALVLAIGIVVDDAIVVVEAVHAKLDHG 421

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVI--GSFAIPMAFGIV 806
            T  S +     ++ +  G  +  S+   ++ + +    + G S +    F + +A  I+
Sbjct: 422 YT--SAKKATIDAMEDITGAII--SITLVMAAVFIPVSFIQGSSGVFYKQFGLTLAIAII 477

Query: 807 VAASSSIFIAAPI-LLFIYDWRAKNAR 832
           ++A +++ ++  +  LF+      + +
Sbjct: 478 LSAINALTLSPALCALFLKPHAEDHNK 504


>gi|85709723|ref|ZP_01040788.1| hypothetical protein NAP1_12598 [Erythrobacter sp. NAP1]
 gi|85688433|gb|EAQ28437.1| hypothetical protein NAP1_12598 [Erythrobacter sp. NAP1]
          Length = 1167

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/550 (11%), Positives = 162/550 (29%), Gaps = 40/550 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L++ +   G++        +  +   P                  ++     
Sbjct: 12  RNPVIPLVLFTALLLAGIVS-----FSRMDVTNNPDVEFPAVT---------VNISQPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +  +  +   + F          ++V   + G
Sbjct: 58  APTEIENQITQRVESALRSINGVNSIQSTASEGNSSTFVEFEVGTDIIEAVNEVETAVNG 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L     +  +        +I       D +     E S  I      ++   E   
Sbjct: 118 VRASLPDGILEPRIGKVDVTGDAIGYVAVEADDMTIE--ELSWFIDDTVAKRLLQIEGMA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++    DP++++ L  T ++++      N    G +  V   R S     
Sbjct: 176 EVGRFGGVDREIEVILDPAKMQALGVTASQINGVLRSENLDAAGGLAEVGGTRQSLRVLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   E+S   +                       G R         +           
Sbjct: 236 NNDSAFELSQRQIQL--------------------GGGRTVRLSDVATVRDGFGERSSIS 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +     +     S     E A      + A +  ++   +   +          
Sbjct: 276 EVGDREVVNFYMNRGRGFSDLAVYEAAVAEMDKIEAETAGVRFIRM-FTSTKYTEDQYKS 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+F+ +   +   ++  +I L+ I T   + L+G  L   S+  + 
Sbjct: 335 SISALIEGAVLAIVVVFLFLRDWRATFISAVAIPLSAIPTFFFMDLMGFNLNFLSLLALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  ++ + +           +  ++   +   + +    
Sbjct: 395 LVAGVLVDDAIVEIENIVRHMRMGKTAYQASIDAADEIGLPVVATSFCIVAVFLPVGLMP 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +++L+S+  A  +   M  + ++ K   +    P+   ++     
Sbjct: 455 GISGQFFQNFGLTVVVAVLMSLAVARMVTPLMAAYFLKAKGHGAHGEGPMMDRYMAVLGW 514

Query: 539 AIQFMRARFW 548
            +   + R  
Sbjct: 515 TLDRGKMRNR 524



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 76/220 (34%), Gaps = 7/220 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +N  V +       V +      V +        + +    +      +EL +  ++ +
Sbjct: 905  NQNRRVLVGADLASGVIKGEAQAEVDQLPVLQNLPTGVIRDVVGEDVWQQELQQNLVIAI 964

Query: 674  IISAIAMLI-YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I   + +    + +  +    L  +T+L L     +    L G   ++     +L L+G 
Sbjct: 965  IAGVLLVFACLVLLYKRLMSPLVNMTSLALAPLGGILLVWLSGFAQSMPVYIGILLLLGI 1024

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV--LPMAVWG 790
               + +++ D   + M          + I ++ ++     V T++A    +  + +++ G
Sbjct: 1025 VSKNSILLIDFAIEEM---ERGTDKLEAIMEAGHKRAQPIVMTTVAMTAGMVPVAISLSG 1081

Query: 791  GSVIG-SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                     + +  G++++   ++ I          +  +
Sbjct: 1082 DGAWRQPMGVVVIGGLIMSTLLTLVIVPAGFSLADGFERR 1121


>gi|323177027|gb|EFZ62617.1| multidrug resistance protein mdtC [Escherichia coli 1180]
          Length = 1014

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/603 (11%), Positives = 168/603 (27%), Gaps = 44/603 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            ++L   I   G+L           +   P       +             L     + +
Sbjct: 3   TILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGASPETM 48

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    +     +        S      +I L F   R     A  V   +    S L
Sbjct: 49  ASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAAQSLL 108

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                            + ++    +        E       Q    I   +        
Sbjct: 109 PSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGDVDVG 167

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
              L  +    +P  L     +   +       N  K          R        ++  
Sbjct: 168 GSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDELKTA 227

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            E                       +                 +   +  V +  +  A 
Sbjct: 228 AE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTNAK 267

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                +     + +   T+++       L+          + +        S    + T 
Sbjct: 268 PAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTL 327

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +  G 
Sbjct: 328 IISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGF 387

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFFFGGG 483
            VD  I+V E I            +   G      T+   +++ +      +++    G 
Sbjct: 388 VVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGR 447

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFLIPDC 537
            +R FA+T+ ++I+IS+  ++++   M  ++         K+++      ++        
Sbjct: 448 LLREFAVTLSVAIVISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQGYGKS 507

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +       R  GV +    ++     +      +     G +  G+ A++ +    +R  
Sbjct: 508 LKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGK 567

Query: 598 LES 600
           L+ 
Sbjct: 568 LQD 570



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 273 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 332

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 333 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 392

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 393 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 449

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  IV++   S+    P++       +K  
Sbjct: 450 REFAVTLSVAIVISLLVSL-TLTPMMCGWMLKASKPR 485



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 792  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 851

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 852  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 911

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 912  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 969

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 970  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1006


>gi|295133804|ref|YP_003584480.1| HAE1 efflux family protein [Zunongwangia profunda SM-A87]
 gi|294981819|gb|ADF52284.1| HAE1 efflux family protein [Zunongwangia profunda SM-A87]
          Length = 1033

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 59/506 (11%), Positives = 146/506 (28%), Gaps = 36/506 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG-FLQMYSDELRSFLKKEG-- 85
           Q  + +FP   P               + + V          ++     L + +      
Sbjct: 8   QLPISQFPQIAPTT-------------VNIFVAYPGASADVLVKSTLITLENSINGVQGM 54

Query: 86  --IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
             +   +    +  + + F       +   +V   +  V   L    ++  +V T  +  
Sbjct: 55  RYLATDATSAGEATLRVIFEPGTDPNDAVVRVKTRVDQVMPLLPELVQREGVVITPIQPS 114

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            ++       +              + I +I   +   +          +    +P R+R
Sbjct: 115 MLMYVNLYSKKESMDEKFLYNYANVKMIPEINRIKGIARSTILGSRKYAMRVWLNPDRMR 174

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
               +  ++       +   +    G      +   +Y++  K                 
Sbjct: 175 AYNVSVDEVMEAMKEQSIVGRPGRLGRSSGIKAQSLEYVLTYKGR-------------YS 221

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
           +  +    I       +         +            L        +       + + 
Sbjct: 222 EPEEYENIIVRANPDGQSLRLKDIGRVELGSEFFDIYSNLDGHPSAAIVLKQSYGSNASD 281

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            IE        ++    P     +          S      T      LV IV+F+ +  
Sbjct: 282 VIEEVKAELEKMKEDFPPGMDYKLSYDVSQFLDASIEQVVHTLRDAFILVAIVVFIFLGD 341

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE--RIREE 441
            +  L+   ++ ++++    ++   G ++ L ++  +VL IG+ VD  I+V E    + +
Sbjct: 342 WRSTLIPILAVPVSLVGAFFVIQFFGISINLVTLFALVLAIGIVVDDAIVVVEAVHAKFD 401

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILI 498
              + S + ++          I       +   + + F  G      R F+ITM  SI+I
Sbjct: 402 EYPDISPYVAVKQVLGEIGGAIIAITAVMVSVFLPISFMSGPVGTFYRQFSITMASSIVI 461

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSID 524
           S   A+++   +   +++    K   
Sbjct: 462 SAIIALTLTPVLCAMLLKNHHGKEHK 487



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/325 (9%), Positives = 89/325 (27%), Gaps = 6/325 (1%)

Query: 507  VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
            ++ +  F         ++ N                      G      F   +      
Sbjct: 691  LKGLFTFFAANYPQYELEFNNELAMQKGVSIGDAMENLNILIGSTYEQGFIKYNRFFKVY 750

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
               +          L +         V  S    L+      +           ++  P 
Sbjct: 751  VQSDPQFRRLPSDILDMYVKNDHGEMVPYSAFMKLKKLQGPNEVTRFNMYNSAAIRGLPA 810

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            +       ++ +K+   E +P +     E +    +R       + +I+      +    
Sbjct: 811  EGYTTADAIDAIKQVAKETLPKNYDIAWEGLSYDEARRGNESIYIFLIVLVFVYFVLAAQ 870

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               +   L  I +L + +  +     L G++ ++ A   ++ L+G    + V++ +    
Sbjct: 871  YESFIIPLSVIFSLPVGVFGSFMLLKLMGLQNDIYAQIGLIMLVGLLGKNAVLIVEFA-- 928

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
             +  ++  +S  +   +         + TS A    ++P+ +    G     +       
Sbjct: 929  -VMKHSEGLSVLEAAIEGAKVRFRPILMTSFAFIAGLIPLIIATGAGAVGNRTLGASALG 987

Query: 804  GIVVAASSSIFIAAPILLFIYDWRA 828
            G++      + I   +         
Sbjct: 988  GMLFGTIFGVIIVPGLYYIFGSLAE 1012



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 93/279 (33%), Gaps = 14/279 (5%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                            + +    + V AN       ++         +      + + +
Sbjct: 205 IKAQSLEYVLTYKGRYSEPEEYENIIVRANPDGQSLRLKDIGRVELGSEFFDIYSNLDGH 264

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGV 673
               +  +       + V+E VK ++ ++           +   +S+ L   I + +  +
Sbjct: 265 PSAAIVLKQSYGSNASDVIEEVKAELEKMKEDFPPGMDYKLSYDVSQFLDASIEQVVHTL 324

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + I + I ++I    W   L  I  + + +         FGI  NL  + A++  IG 
Sbjct: 325 RDAFILVAIVVFIFLGDWRSTLIPILAVPVSLVGAFFVIQFFGISINLVTLFALVLAIGI 384

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA--VWG 790
            V+D +VV + +      Y   IS    + + + E  G  +       + V       + 
Sbjct: 385 VVDDAIVVVEAVHAKFDEYP-DISPYVAVKQVLGEIGGAII---AITAVMVSVFLPISFM 440

Query: 791 GSVI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              +      F+I MA  IV++A  ++ +   +   +  
Sbjct: 441 SGPVGTFYRQFSITMASSIVISAIIALTLTPVLCAMLLK 479


>gi|302381953|ref|YP_003817776.1| acriflavin resistance protein [Brevundimonas subvibrioides ATCC
           15264]
 gi|302192581|gb|ADL00153.1| acriflavin resistance protein [Brevundimonas subvibrioides ATCC
           15264]
          Length = 1069

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 176/583 (30%), Gaps = 41/583 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +V+L+ ++   G++        +  ++ FP+                  +V    
Sbjct: 12  RNPIPIVLLFIVLTVAGIIS-----YGRLPVNNFPNVDLPVV---------AVTVVQSGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L +      ++    +  +++F      E   + V   + G
Sbjct: 58  APTELETQVTRLIEDAVAGLGEVDDINSTVSDSVSTTSVTFNLGVDLEKATNDVRNAVAG 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++ ++      ++ I         +     E S  +      ++   +   
Sbjct: 118 VRQNLPADVQEPIVQRIEFTQVPIATYVVRAPGMNPE--ELSWFVDNTIAKRMLSVQGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++  + DP +L     + A +S      N +  G    +     +     
Sbjct: 176 QVSRDGGVSREIRVKLDPEKLAAQGVSAAAVSNQLRAANINLPGGRGEIGGNEQAIRTLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++   +                      +G R         +    +      
Sbjct: 236 SAPSVEALAETLI---------------------PVGGRTVRLGDLGEVTDEWSEPRGRA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +     S     S     E        L A  L               + +   
Sbjct: 275 RFNGGEVVAFSISRSVGSSELDVYERTQEEIEALDA-ELGTVTIEEVTNTTQDVINNFHA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + AGL ++V+ + +   +  L+A  ++ L++I T  ++ L+G +L + ++  + 
Sbjct: 334 SVEALLLGAGLAVLVVLVFLRDWRATLIAAVAMPLSLIPTFLVMDLMGQSLNVVTLLALS 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I    R  ++ + +           +  +  T +       F  
Sbjct: 394 LTIGILVDDAIVEIENIVRHIRDGKAPYPAAIEAADEIGLAVIATTATLIAVFAPTGFMP 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FAI   +S+  S+  A ++   M  ++++  + K          +L     
Sbjct: 454 GVVGQFFKSFAIATCVSVFFSLVVARTLTPLMSAYLLKADQGKEHGDPAWMTAYLKVLRW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
            +    +       +      +   L    L++ +   G   L
Sbjct: 514 GMGHSGSERLKAERATKRGSFARRHLLWRVLDHRVWVMGLGLL 556



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 46/137 (33%), Gaps = 10/137 (7%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L A   + L +  T     L G   N+  + A+   IG  V+D +V  + + 
Sbjct: 352 FLRDWRATLIAAVAMPLSLIPTFLVMDLMGQSLNVVTLLALSLTIGILVDDAIVEIENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
             ++      +      ++ +E     + T+        P     G V     SFAI   
Sbjct: 411 --VRHIRDGKAPYPAAIEAADEIGLAVIATTATLIAVFAPTGFMPGVVGQFFKSFAIATC 468

Query: 803 FGIVVAASSSIFIAAPI 819
             +      S+ +A  +
Sbjct: 469 VSVFF----SLVVARTL 481



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 68/168 (40%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I  ++   + M + + + FK +F  +  +  L +          + G   ++ A+  ++ 
Sbjct: 882  IFAIVTGILLMYVVLVLLFKSFFHPVTILAALPVSFGGAFFLLLVTGKALSMPALIGIIM 941

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L G +  + +++ D     +      +S  D I  + ++     + T++A  + +LP+A+
Sbjct: 942  LTGIAAKNSILLVD---YAIIAMQRGMSQYDAIIDAAHKRAQPIIMTTLAMGLGMLPIAM 998

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G       AI +  G++ + + S+         I   + +  R+
Sbjct: 999  AFGEGTEFRSPMAIAVIGGLITSTALSLIFIPAAFSLIDGGKRRMERL 1046


>gi|317054449|ref|YP_004118474.1| acriflavin resistance protein [Pantoea sp. At-9b]
 gi|316952444|gb|ADU71918.1| acriflavin resistance protein [Pantoea sp. At-9b]
          Length = 1027

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/627 (11%), Positives = 181/627 (28%), Gaps = 34/627 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  M+  + +++          +   P+      I          +  L     + +   
Sbjct: 12  IAVMLLWLAVMVTGFVCWKNLPVAALPTFDTPT-IK--------VNASLSGASPETMASS 62

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    ++  S +        +  +    I L F  S   ++ +  V   L     KL   
Sbjct: 63  VATPLEKNLSTIPGVATMTSTSLEGATTIVLEFDPSVNIDSASVDVQSALYQTLKKLPAQ 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                         + + +Q ++D       + +          + +     +     + 
Sbjct: 123 MTTPPTFKKVNPADAPI-AQISLDSPSMTLSDLNRFSDDLISPALSMLNGVAEVDVIGQK 181

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +  E DP++L     T  ++       N++        +           + +  + 
Sbjct: 182 RYAVRIEVDPAKLAATNMTLEELQTALKAANDNSPVGELDGKRQMMMLQTGGDLRNAADF 241

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             + +                         +         +   +   L    +      
Sbjct: 242 KNVVIA--------------------SRNGQPVRLSDVATVQDSIENTLSHSAVNNHTAI 281

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
               S +   +   T++    L   L+          +      +   +      T  + 
Sbjct: 282 VLSISRQPGANLVATLDAIKQLLPQLQQQMPASVHMQLLNDRSISVRNAIHDVNLTLLLT 341

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV++V+ + + + +  L+   S+ ++++ + AL+   G +L   S+ G+ + +GL VD
Sbjct: 342 IALVIMVILLFLRHVRATLIPALSVPISLLGSFALMYAFGLSLDNISLMGLTIAVGLVVD 401

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VR 486
             I+V E I     +  +   +   G      T+   +++ +   + +FF  G       
Sbjct: 402 DAIVVLENIMRYIEQGMAPRQAAVKGAKEVGFTVISISLSLVAVFIPIFFMPGTMGLLFH 461

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            FA  + L+I +S   +++++  ++  +IR+    +      +R F        Q     
Sbjct: 462 EFAWVVSLAIAVSAAASLTLIPLLVPMLIRHDNDPAQPDPAWNRMFERLFEALRQRYGQA 521

Query: 547 -FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
             W V    +    ++  +   G  Y    KG            ++   +    + +   
Sbjct: 522 LHWAVEHQAVTLSVALATVALTGYLYTSAPKGFFPQEDTGQVTANIDTPQDMSFAARKQV 581

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                     +  V       D     
Sbjct: 582 AYQLAATLLNDPAVTTIVTKVDHDTTQ 608



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 67/154 (43%), Gaps = 7/154 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+I +++R      L    ++ + +  +      FG+  +  ++  +   +G 
Sbjct: 340 LTIALVIMVILLFLRH-VRATLIPALSVPISLLGSFALMYAFGLSLDNISLMGLTIAVGL 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +   M+     ++ R    K   E     +  S++     +P+    G+
Sbjct: 399 VVDDAIVVLENI---MRYIEQGMAPRQAAVKGAKEVGFTVISISLSLVAVFIPIFFMPGT 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +      FA  ++  I V+A++S+ +   ++  +
Sbjct: 456 MGLLFHEFAWVVSLAIAVSAAASLTLIPLLVPML 489



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 82/212 (38%), Gaps = 7/212 (3%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + + +      + +   + +++    I    T+  T      + ++     +  ++++  
Sbjct: 804  ITISFDLAPGKSLSDATQAIQQAGQAIHLPPTVFGTYAGQAALYQQSQSTQVWLIVLALA 863

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + + + ++ W   +  +  L       L    L G++    A+  +L LIG    + 
Sbjct: 864  VIYVILGMLYESWIHPITILLGLPSAAVGALLALRLLGLDLTFIAMIGILLLIGIVKKNA 923

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVI 794
            +++ D            +S  D I ++  +     + T++ A +  LP+      G  + 
Sbjct: 924  IMMID--FALSAQREQGMSAHDAIIQACLQRFRPIMMTTLCAIMGALPIACGWGAGAELR 981

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                + +  G+V +   ++FI  P+L  ++D 
Sbjct: 982  QPMGVAVVGGLVFSQFITLFI-TPVLYLLFDR 1012


>gi|282880093|ref|ZP_06288813.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella timonensis CRIS 5C-B1]
 gi|281305966|gb|EFA98006.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Prevotella timonensis CRIS 5C-B1]
          Length = 1065

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/523 (11%), Positives = 150/523 (28%), Gaps = 35/523 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G +      L    ++++P   P                     
Sbjct: 8   KRPVLSTVISVVIVILGFI-----GLATLPIEQYPDIAPPTI---------SVWTTYIGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           + + V   +    +E  + ++       S     + +IT+ F      +  A  V   + 
Sbjct: 54  DAETVKNSVLAPLEESINGVENMEYMTSSATNAGSAQITIYFRQGTNPDMCAVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  +  +  +  +  +   +++     +         +       +  I   +  
Sbjct: 114 QAQGLLPAEVNRVGVTVSKRQTSQVIMYTLTSEDGKYDDRFLTNYNNINIVPAIKRIQGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P  ++Q       ++      N       FG +        +
Sbjct: 174 GDVQSPGMKTYSMRIWLKPDVMKQYGLIPTDIAGALAEQNIEAAPGSFGEQ---SDMAYE 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y++  K  +                 +    I       +         I          
Sbjct: 231 YVMRYKGRL-------------KTAEEFGNIILHSTQTGQTLKLKDVAKIELGGLTYAVS 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                   +  +    A  + N   +              P     +          S  
Sbjct: 278 MRNNNNPSSMGMVQQIAGSNANVIAKAVKEELDKQAKNFPPGMKYKINYDVTEFLYASIE 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV +V+++ +   +  ++   ++ +++I     L + G ++ L +++ +
Sbjct: 338 EVVKTLVITLLLVFLVVYIFLQDFRSTIIPMIAVPVSLIGAFFFLKMFGFSINLLTLSAL 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L I + VD  I+V E +  +      S   +     S     I    +      V + F
Sbjct: 398 LLAIAIVVDDAIVVVEAVHAKLDLGYKSTMTASVDAMSEIAGAIISITLVMAAVFVPVSF 457

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            GG +    R F +TM +SI IS   A+++  A+    ++ K 
Sbjct: 458 IGGTSGTFYREFGVTMAVSIFISALNALTLSPALCAIFLKPKN 500



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/446 (9%), Positives = 119/446 (26%), Gaps = 21/446 (4%)

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            A+L+   A  +   + G     G   D    + +    ++R       ++     +  + 
Sbjct: 598  AMLASNPAIQSREQLQGFNFIAGQGSDQATFIIKLKPFKDRNMGQSAMAVLGMIYKQTAQ 657

Query: 463  IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            I D+    ++A       G     G ++ +       +     I +  +  + +  +++ 
Sbjct: 658  IKDAQ---ILAFAPPMIPGFSLSNGVSLVLQDKTGGDLSKFFDITKQYLAELNKRPEIQM 714

Query: 523  IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN---------YGI 573
               +    +      + +   +         +         ++    N            
Sbjct: 715  AMTSYNPNYPQYMIDVDVAKCKQVGISPATVLSTLQGYYGGMYVSNFNAYGKLYRVMIQG 774

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            D     +   + +  V      + +         +   +  +  +               
Sbjct: 775  DVDSRARPEGMNDIFVRTPAGMAPINGFCSIKRVYGPSNVNRFNMFTSINATVTVNDGYS 834

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKW 690
              E ++                        E        +I     + +Y+ +      +
Sbjct: 835  SGEAIEAIKEVAATTLPQGYGYDFSGLSRSENSSSNSTVMIFGLCLLFVYLILAAQYESY 894

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                  I ++   +     F  LFG   ++    +++ LIG    + +++     +    
Sbjct: 895  LLPFAVILSIPFGLAGAFLFTQLFGHNNDIYMQISLIMLIGLLAKNAILIVQFALE---R 951

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVV 807
              T ++            L   + TS+A  I +LPM    G               G+++
Sbjct: 952  RQTGMAITWASILGAGARLRPILMTSLAMVIGLLPMMFAMGVGKNGNQTLGAAAVGGMLI 1011

Query: 808  AASSSIFIAAPILLFIYDWRAKNARI 833
                 +F+   + +     + K   +
Sbjct: 1012 GTFCQLFVVPVLFVIFQALQEKLKPL 1037



 Score = 42.8 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 98/273 (35%), Gaps = 6/273 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 + +   L    +F   I       + + L  V           +S +N +   +
Sbjct: 227 MAYEYVMRYKGRLKTAEEFGNIILHSTQTGQTLKLKDVAKIELGGLTYAVSMRNNNNPSS 286

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +  Q    ++    + ++    K  +  P            +     I + +  ++I+
Sbjct: 287 MGMVQQIAGSNANVIAKAVKEELDKQAKNFPPGMKYKINYDVTEFLYASIEEVVKTLVIT 346

Query: 677 AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            + + + ++I    +   +  +  + + +     F  +FG   NL  ++A+L  I   V+
Sbjct: 347 LLLVFLVVYIFLQDFRSTIIPMIAVPVSLIGAFFFLKMFGFSINLLTLSALLLAIAIVVD 406

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-- 793
           D +VV + +   + L     S       +++E  G  +  ++      +P++  GG+   
Sbjct: 407 DAIVVVEAVHAKLDLGYK--STMTASVDAMSEIAGAIISITLVMAAVFVPVSFIGGTSGT 464

Query: 794 -IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               F + MA  I ++A +++ ++  +      
Sbjct: 465 FYREFGVTMAVSIFISALNALTLSPALCAIFLK 497


>gi|15965893|ref|NP_386246.1| putative transport transmembrane protein [Sinorhizobium meliloti
           1021]
 gi|307308203|ref|ZP_07587912.1| acriflavin resistance protein [Sinorhizobium meliloti BL225C]
 gi|307319670|ref|ZP_07599095.1| acriflavin resistance protein [Sinorhizobium meliloti AK83]
 gi|15075162|emb|CAC46719.1| Probable acriflavine resistance protein [Sinorhizobium meliloti
           1021]
 gi|306894601|gb|EFN25362.1| acriflavin resistance protein [Sinorhizobium meliloti AK83]
 gi|306901201|gb|EFN31807.1| acriflavin resistance protein [Sinorhizobium meliloti BL225C]
          Length = 1044

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 65/527 (12%), Positives = 157/527 (29%), Gaps = 48/527 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++ ++I   GL            +   P                   +  E D
Sbjct: 26  RRPIFALVVNTLIVVAGLAA-----WNGVEIRELPQVDQPV-----------VSVTTEFD 69

Query: 62  E--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + ++  +    +   S ++       S    ++++TL F+D+      A+ V   L
Sbjct: 70  GASPETIDREVTSVIEGAVSRVQGIKGISSSSSFGRSRVTLEFSDTTDIGQAANDVRDAL 129

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +  +L  D  +  +V        I+      D +     + ++ +  +  D++   E 
Sbjct: 130 GRITGQLPDDADEPRIVKADSDSQPIMRLALTSDTMSMD--DMTLLVENEISDRLAAVEG 187

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                           + + ++L     T A +       +               S   
Sbjct: 188 VADVTVYGDQEKIFRIDLNQAKLAGRGVTVANLREALSDASYDVPAGSLTSASQDISVRA 247

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              ++   +   + L                                   +         
Sbjct: 248 TADLQTPEQFENLML------------------------GNNVRLRDVATVTLGPDTGTS 283

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS-LPIKLNIVEERNVGADLGS 358
                           +AQ +     E    +   + +          +   +     G+
Sbjct: 284 ALRSNGREGIGLGIIRQAQSNTVDISEGVRSVVDAISSDILPTGTELKITSDDAVFINGA 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               +    +   +V +V+++ +L  +  L+   ++ + +I T+A + L G ++ + ++ 
Sbjct: 344 IHEVEIALFVAVFIVTLVIYLFLLDWRATLIPTITMPIALIGTVAAIYLAGFSINILTLL 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IVL  GL VD  I+V E I     +      +   G    +  +  +  T     V L 
Sbjct: 404 AIVLATGLVVDDAIVVLENIVRRRAEGLGPRAAAVHGTLEVFFAVLATTATLAAVFVPLS 463

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           F  G      R F   +  SIL+S F ++++   +   ++  +  + 
Sbjct: 464 FLPGQTGGLFREFGFVLAFSILLSSFVSLTLCPMLASRMLTKEPHEH 510



 Score = 88.2 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 76/246 (30%), Gaps = 11/246 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +   +R         D             + L            + E V+  +  I    
Sbjct: 264 NNVRLRDVATVTLGPDTGTSALRSNGREGIGLGIIRQAQSNTVDISEGVRSVVDAISSDI 323

Query: 650 TIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYI-WIRFKWYFALGAITTLILDI 704
               TE+         I   I    + + ++   + + I      W   L    T+ + +
Sbjct: 324 LPTGTELKITSDDAVFINGAIHEVEIALFVAVFIVTLVIYLFLLDWRATLIPTITMPIAL 383

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T+    L G   N+  + A++   G  V+D +VV + +   ++     +  R      
Sbjct: 384 IGTVAAIYLAGFSINILTLLAIVLATGLVVDDAIVVLENI---VRRRAEGLGPRAAAVHG 440

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
             E     + T+       +P++   G        F   +AF I++++  S+ +   +  
Sbjct: 441 TLEVFFAVLATTATLAAVFVPLSFLPGQTGGLFREFGFVLAFSILLSSFVSLTLCPMLAS 500

Query: 822 FIYDWR 827
            +    
Sbjct: 501 RMLTKE 506



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             V    + + + + +  +F+ +   L  ++T+ L +   +    + G   N+ +   ++ 
Sbjct: 864  FVTFGFALVIIFLVLAAQFESFVSGLIIMSTVPLGLACAVFAMIVTGNTLNIYSQIGLVM 923

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G    + +++ +      +L       R  I+ + N  L   + T +A  +  +P+ +
Sbjct: 924  LVGIMAKNGILIVEFAN---QLRDRGQDVRSAIENAANIRLRPVMMTMIATVVGAVPLVL 980

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                G     +    +  G+ +A   ++++     L I  +   +A
Sbjct: 981  ASGAGAEARIALGWVLVGGLGLAVVVTLYLTPVAYLVIARFTKPHA 1026


>gi|85716797|ref|ZP_01047764.1| Acriflavin resistance protein [Nitrobacter sp. Nb-311A]
 gi|85696404|gb|EAQ34295.1| Acriflavin resistance protein [Nitrobacter sp. Nb-311A]
          Length = 1041

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/683 (12%), Positives = 191/683 (27%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    V+   ++  +G +      + +      P                   +     
Sbjct: 11  RHPLPSVLFSIILLVLGWVSFTKLAITRLPSADIPVIS--------------VAISQFGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ FA     +   + V   +  
Sbjct: 57  APAELEAQVTKTIEDGVSGVEGVRHISSSITDGLSLTTIQFALETNTDRALNDVKDAVTR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +  + L+       + IV              + S  +       +       
Sbjct: 117 VRANLPQNVNEPLIQRVDVIGLPIVTYAAISPGKTPE--QLSYFVDDVVKRALQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL  +  T   +S      N    G    +     +     
Sbjct: 175 QVERIGGVEREILVSLDPDRLHAVGLTAVDVSQRLRGTNVDVAGGRAEIGQNDQAIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   E++G  ++                      G           +   +A      
Sbjct: 235 GAKTLNELAGTMISLP--------------------GGSEIRLDDLGTVTDTIADRRTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S     +        L+     + L +++  +V    G+   
Sbjct: 275 RFNGEPVVALGIKRSKGASDVVVAKAVQERIDALKEQYPDVDLKLID-TSVEFTKGNYEA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +I++F+ +   +  ++A  S+ L++      + LLG +L L S   I 
Sbjct: 334 AISTLFEGATLAVIIVFLFLRDIRATIIAAISLPLSIFPAFWAMDLLGFSLNLVSFLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A   I  + I        + 
Sbjct: 394 LSTGILVDDAIVEIENIVRHMRMGKSPYRAALEAADEIGLAVIAISLTIIAIFAPASFMS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ + +  S+  A  +   +  + ++    +      + R +      
Sbjct: 454 GIAGQFFKQFGITVSVQVFFSLLAARLVTPMLAAYFMKDHSHEPPPPGRVLRAYSSLVTW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           +++               SI SI LL    L      +  + + +     +  +   +  
Sbjct: 514 SVRHYIITVLIGFAIFAASIWSIKLLPQGFLPAQDTARSLLAMELPPGSQLAHTEKMTEE 573

Query: 599 ESLQIGDISFQ--NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            + ++         F         LQ     S+      +  +      + LS  Q  E 
Sbjct: 574 IAARLRKRPEVASVFVDGGRVPPGLQEVRRASLIINYTPKQDRSITQRELELSIGQELES 633

Query: 657 VGPKISRELIRKGIVGVIISAIA 679
           V       L   G+  V +    
Sbjct: 634 VPDIRYWFLDENGLRAVSLVVTG 656



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 74/249 (29%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +     + L  + +  +++       +        L   + +    V   + ++   
Sbjct: 246 MISLPGGSEIRLDDLGTVTDTIADRRTFARFNGEPVVALGIKRSKGASDVVVAKAVQERI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             + E  P   ++  +                    + +A++I           + A  +
Sbjct: 306 DALKEQYPDVDLKLIDTSVEFTKGNYEAAISTLFEGATLAVIIVFLFLRDIRATIIAAIS 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I        L G   NL +  A+    G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSIFPAFWAMDLLGFSLNLVSFLAITLSTGILVDDAIVEIENI---VRHMRMGKSPYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     +  S+           + G  G     F I ++  +  +  ++  + 
Sbjct: 423 AALEAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARLVT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PMLAAYFMK 491



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 76/234 (32%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  + +          ++     +      + A     + +            ++   
Sbjct: 772  SVVADISLDQGPTNINRYDRQRQATVAADLVGTAALGDATDKINDLPVMKTLPKGVKVNP 831

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   EL       +    + +   + + F  +   +  + +L L I   +    L 
Sbjct: 832  SGDAESLNELSEGFATAITAGLMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIMALLLT 891

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G +        +L L+G    + +++ +   ++++         + I  +  +     V 
Sbjct: 892  GKQLTTPVWIGILMLMGIVTKNAIMLVEFAVESIRAGHAR---EEAIIDAGMKRARPIVM 948

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T++A    ++P A+    GG      A+ +  G++ +   S+     + L + D
Sbjct: 949  TTIAMVAGMMPSALAFGAGGEFRSPMALAVIGGLLFSTLLSLVFVPAMFLLMDD 1002


>gi|296123094|ref|YP_003630872.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces limnophilus DSM 3776]
 gi|296015434|gb|ADG68673.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Planctomyces limnophilus DSM 3776]
          Length = 1056

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/591 (12%), Positives = 163/591 (27%), Gaps = 42/591 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      +++  +I  +G L           + +FPS  P + +               V
Sbjct: 6   LHRPALAIVISLLILFMGGLAI-----KALPISQFPSVAPPSVVVA-------------V 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKV 115
                     +      L   +     +   +       +  IT+ F            V
Sbjct: 48  SYPGASAEVLVDSVLVILEQAINGVQDMRYMTSAATSAGEATITIVFEPGTDPNVAVLNV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +Q V S++     +  ++        ++       +           +    + ++ 
Sbjct: 108 NNRVQSVRSRVPPIVDREGIIVLQNMSSMLMYVNVYSIEKSDDQNYLYNYVTANVLPELK 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  E +  R+R        +       +        G    + 
Sbjct: 168 RIRGVGTANILGNRAYAMRVELNLDRMRAYDIAATDVMKAIAEQSMIGSPGRLGQATGKT 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S   +Y++                    K  +    I       +         +    +
Sbjct: 228 SQTIEYVLT-------------WVGRYTKPEQYENIILRANEDGQILRLKDVAKVELASS 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG--SLPIKLNIVEERNVG 353
                           +       +    IE        ++      P     V      
Sbjct: 275 FYDLYSDKDGYPSAAIVLKQTPGSNATQVIEAVKEHLHEMKHNLPFPPGMDYEVSYDVSS 334

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S      T      LV +V+F+ +   +  L+   ++ +++I T   + + G ++ 
Sbjct: 335 FLEASIEKVVHTLFEAFVLVSLVVFLFLGDFRSTLIPTLAVPVSLIGTFFFMLMFGMSVN 394

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALI 472
           L ++  +VL IG+ VD  I+V E +  +  +   S + +           I    +    
Sbjct: 395 LITLFALVLAIGVVVDDAIVVVEAVHAKMHEKHLSPYNATKEVIHEIGGAIIAITLVMTA 454

Query: 473 ATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             + + F  G      R FA+TM +SI++S   A+++   +   I++             
Sbjct: 455 VFIPVTFMTGPVGVFYRQFALTMAMSIVLSGVVALTLTPVLCAMILKPMNHGHKKRWRGP 514

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
              L+    A        + V +  + ++  + +L   G   GI F   I 
Sbjct: 515 IAILLEIFNAFIERITGGYVVILKGVVTLRMLTMLVIAGFGAGIFFVNTIL 565



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 52/452 (11%), Positives = 135/452 (29%), Gaps = 33/452 (7%)

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
                +L  ++L +L   +        +     +     +                 ++ 
Sbjct: 51  GASAEVLVDSVLVILEQAINGVQDMRYMTSAATSAGEATITI-----VFEPGTDPNVAVL 105

Query: 454 MGFSRAYS-------------TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
              +R  S              I   N+++++  V ++       + +      + ++  
Sbjct: 106 NVNNRVQSVRSRVPPIVDREGIIVLQNMSSMLMYVNVYSIEKSDDQNYLYNYVTANVLPE 165

Query: 501 FT---AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR-FWGVGISILF 556
                 +     +       +   ++D              AI         G       
Sbjct: 166 LKRIRGVGTANILGNRAYAMRVELNLDRMRAYDIAATDVMKAIAEQSMIGSPGRLGQATG 225

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                       +      +    + + AN    +  ++   +            D +  
Sbjct: 226 KTSQTIEYVLTWVGRYTKPEQYENIILRANEDGQILRLKDVAKVELASSFYDLYSDKDGY 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITE-----IVPLSTIQNTEIVGPKISRELIRKGIV 671
               +  +       T+V+E VK+ + E       P                  I K + 
Sbjct: 286 PSAAIVLKQTPGSNATQVIEAVKEHLHEMKHNLPFPPGMDYEVSYDVSSFLEASIEKVVH 345

Query: 672 GVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +  + + + + +++    +   L     + + +  T  F  +FG+  NL  + A++  I
Sbjct: 346 TLFEAFVLVSLVVFLFLGDFRSTLIPTLAVPVSLIGTFFFMLMFGMSVNLITLFALVLAI 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +VV + +    K++   +S  +   + I+E  G  +  ++      +P+    
Sbjct: 406 GVVVDDAIVVVEAVH--AKMHEKHLSPYNATKEVIHEIGGAIIAITLVMTAVFIPVTFMT 463

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           G V      FA+ MA  IV++   ++ +   +
Sbjct: 464 GPVGVFYRQFALTMAMSIVLSGVVALTLTPVL 495



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 80/245 (32%), Gaps = 10/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +     Q  +    + +        + A         + I E+  
Sbjct: 793  FVKNDKGEMVPYSAFMRIQKKQGLNEINRYNLYPTAAIQGAPAPGYSSGEAIQAIQEVAK 852

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI----RFKWYFALGAITTLILD 703
             +  ++ +I    +S +   KG + V I  I ++    +       +   L  I +L + 
Sbjct: 853  ATLPKDYDIDWQGLSYDEANKGNLAVYIFLIVVVFVYMVLVGQYESFILPLAVIISLPVG 912

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I  +       G+  ++ A   ++ L+G    + +++ +     ++L    +S RD   +
Sbjct: 913  IFGSFFALQAMGLSNDVFAQIGLVMLVGLLGKNAILIIEFA---IQLRQAGMSIRDAAIE 969

Query: 764  SINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
            +        + TS A    ++P+    G   I   +       G++V     + +   + 
Sbjct: 970  AGKVRFRPILMTSFAFIAGLIPLVRATGPGAIGNRTIGTTAVGGMLVGTVIGVLVIPGLY 1029

Query: 821  LFIYD 825
                 
Sbjct: 1030 YIFAK 1034


>gi|227488789|ref|ZP_03919105.1| preprotein translocase subunit SecD [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227542214|ref|ZP_03972263.1| preprotein translocase subunit SecD [Corynebacterium
           glucuronolyticum ATCC 51866]
 gi|227091211|gb|EEI26523.1| preprotein translocase subunit SecD [Corynebacterium
           glucuronolyticum ATCC 51867]
 gi|227182043|gb|EEI63015.1| preprotein translocase subunit SecD [Corynebacterium
           glucuronolyticum ATCC 51866]
          Length = 705

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 111/576 (19%), Positives = 214/576 (37%), Gaps = 70/576 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W  +    I  I +   L      +     P         LG+DL+GG+ + L   
Sbjct: 30  RYP-WGALGIFGIILILVYSLLFF----TPGANTP--------KLGIDLQGGTRVTLVPQ 76

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +     L      L + +   G+    +    N + ++           + +    Q 
Sbjct: 77  GGEPTPQQLDQARTILENRVNGMGVSGAEVVTDGNTLVITVP-GEDTAQARN-LGQTSQL 134

Query: 122 VNSKLNVDPKK---NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           V   ++         ++ T T+     V       +  +  ++Q  +++ Q+  Q G  E
Sbjct: 135 VFRTVSQPAAPQVDQIMPTLTDMANRWVSYGLVTPEKANEVLKQYHDLLNQQAAQNGGEE 194

Query: 179 S---------------------TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
           +                       ++     +   +  ++  +     +   A M   + 
Sbjct: 195 AAPATGEAPTVTAEPLPEPKNSIEEQKRRDEVFDMMLKDRQSTEGATQMAAAALMECSEE 254

Query: 218 LPNNSKKGFMFGVRFL-------------RDSDGNQYLVEDKVEISGIHLNGAT------ 258
             ++   G     + L               S       ED   ++G  ++         
Sbjct: 255 NTHDPIAGGDDLSKPLVACYPEMGQPLLLGPSPLLVGEPEDGRRLTGNEIDTNRPINGGI 314

Query: 259 -ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGK 316
                             E G+  + ++T++ + K +AV LD ++++AP +  A      
Sbjct: 315 NPQTAQNEVVFTFKSDNGETGSETWAKLTQEYLNKQVAVTLDSQIISAPQVQSATPVGSS 374

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN------VGADLGSDSIYKGTCAIVA 370
             I+G    E A  LA  L+ G+LP+               +   LG+ S+  G  A + 
Sbjct: 375 TMITGMKNEEEAKTLANNLQYGALPLSFVGENGERGGTTTVIPPTLGAASLRAGLIAGLI 434

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGL 426
           GL+ + +F +V Y  +GL+A F++  +  L    L LL    G +L L  +AG+++GIG 
Sbjct: 435 GLLAVAVFSLVNYRLYGLLAMFTLVASGTLVYGSLVLLGRWIGYSLDLAGVAGLIIGIGT 494

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
             DS +++ ERI++E R  ++   ++  G+ RA  TI   N  ++IA VVL+    G V+
Sbjct: 495 TADSFVVLYERIKDEIRDGRTFRSAVPRGWDRARKTIISGNFVSVIAAVVLYILAVGDVK 554

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           GFA T+GL+ +  +     +   ++I   R K    
Sbjct: 555 GFAFTLGLTTVFDLAVTFFVTAPLVILASRKKFFAK 590



 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 86/219 (39%), Gaps = 8/219 (3%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +  ++ +         +                   T ++ P +    +R G++ 
Sbjct: 372 GSSTMITGMKNEEEAKTLANNLQYGALPLSFVGENGERGGTTTVIPPTLGAASLRAGLIA 431

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLT 728
            +I  +A+ ++  + ++  + L A+ TL+   T   G   L G       +L  VA ++ 
Sbjct: 432 GLIGLLAVAVFSLVNYRL-YGLLAMFTLVASGTLVYGSLVLLGRWIGYSLDLAGVAGLII 490

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG + +  VV+Y+R++  ++      +FR  + +  +      +  +  + I+ + + +
Sbjct: 491 GIGTTADSFVVLYERIKDEIRD---GRTFRSAVPRGWDRARKTIISGNFVSVIAAVVLYI 547

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                +  FA  +    V   + + F+ AP+++     +
Sbjct: 548 LAVGDVKGFAFTLGLTTVFDLAVTFFVTAPLVILASRKK 586


>gi|15889664|ref|NP_355345.1| Acr family transporter [Agrobacterium tumefaciens str. C58]
 gi|15157566|gb|AAK88130.1| Acr family transporter [Agrobacterium tumefaciens str. C58]
          Length = 1106

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 170/607 (28%), Gaps = 44/607 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ ++++  +G+            + RFP+                  +     
Sbjct: 9   RNPIAPLLGFALLMILGM-----QAFNTLPITRFPNIDVPVV---------AVTVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++   Q+  T+ F   +  E         +  
Sbjct: 55  SPSELEMQVTKEIEDAVAAISGVDEIQSTVVDGQSTTTVVFRIEKPTEEAVQDTKDAIDK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D +  ++     +  +I     +   +     E S  +       +       
Sbjct: 115 IRSDLPADIEVPVVSKIDVEGQAIQTFAVSSPNMTLE--ELSWFVDDTIKRSLQGQSGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++     P +L     T  +++                         N  
Sbjct: 173 KVDRYGGADREVRVSLSPEKLDAYGITATEVNSQLR-------------------GTNVD 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   + ++ G      T        +          G                      R
Sbjct: 214 LGSGRGQVGGNEQTIRTLGDTRDVSQLANTTIALSNGRFVKLSELGTVTDTYQEQKSFSR 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P +       +++ +   ++      +      + P     + +  V    G+   
Sbjct: 274 FNGNPAV--TFAVFRSKGASEVSVAETVAASLDQVRKNNPDVSIQMVDDAVYFTYGNYKA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+ + +   +  L+A  ++ L+ I T  ++ ++G +L L S   + 
Sbjct: 332 ALDTLIEGAILAVIVVLLFLRNWRATLIAAVALPLSAIPTFWIMDIMGFSLNLVSFLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    +  ++ + +           +  ++ T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIKMGKTPYRAALEAADEIGLAVIATSFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIR----YKKMKSIDINPLSRFFLI 534
           G   +    F +T+  S+  S+  A  I   M  +++R           D   +  +  +
Sbjct: 452 GIPGQYFIQFGLTVAFSVFFSLAVARLITPLMAAYLMRAEDAMDDHHDNDGRLMKAYTRM 511

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 ++       VG         + L    G     D    + L V       L   
Sbjct: 512 VTATTRKWWARYLTLVGAIAFLVASVMLLAQVPGSFLPPDDASRVTLSVELPPNATLDET 571

Query: 595 RSNLESL 601
                 +
Sbjct: 572 DRTTTQI 578



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 81/251 (32%), Gaps = 6/251 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + +   R V LS + +  ++ Q      +            + +    V+    +  
Sbjct: 242 NTTIALSNGRFVKLSELGTVTDTYQEQKSFSRFNGNPAVTFAVFRSKGASEVSVAETVAA 301

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              ++ +  P  +IQ  +                 +  + +A+++ +     W   L A 
Sbjct: 302 SLDQVRKNNPDVSIQMVDDAVYFTYGNYKAALDTLIEGAILAVIVVLLFLRNWRATLIAA 361

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             L L    T     + G   NL +  A+    G  V+D +V  + +    +      + 
Sbjct: 362 VALPLSAIPTFWIMDIMGFSLNLVSFLALTLATGILVDDAIVEIENI---ARHIKMGKTP 418

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIF 814
                ++ +E     + TS       +P++   G        F + +AF +  + + +  
Sbjct: 419 YRAALEAADEIGLAVIATSFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLAVARL 478

Query: 815 IAAPILLFIYD 825
           I   +  ++  
Sbjct: 479 ITPLMAAYLMR 489



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + +L L I        +     ++  +  +L L+G    + +++ D   +  
Sbjct: 897  DVIQPFTILFSLPLAIGGVAVALIITQNALSMPVLIGILMLMGIVTKNAILLVDFAIEMR 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +     +     + ++  +     + TS+A    +LP A+    GGS     AI +  GI
Sbjct: 957  R---HGMERVHAMVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGI 1013

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +V+   S+ +     L + D
Sbjct: 1014 IVSTVLSLIVVPAFFLIMDD 1033


>gi|323498022|ref|ZP_08103031.1| ACR_tran, AcrB/AcrD/AcrF membrane proteins family [Vibrio
           sinaloensis DSM 21326]
 gi|323317067|gb|EGA70069.1| ACR_tran, AcrB/AcrD/AcrF membrane proteins family [Vibrio
           sinaloensis DSM 21326]
          Length = 1040

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/651 (9%), Positives = 178/651 (27%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                      E  
Sbjct: 9   KRPVAALVLSLLLCVFGIVS-----FSKLAVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSSSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +  + R  +D+  +     
Sbjct: 115 AQRSLPDEADDPIVFKNNGSGEASLYINLSSSE--MDRTQLTDYVERVLMDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P ++     TT+ ++      N    G                
Sbjct: 173 SVDISGGLYKVMYVKLKPDQMAGRGVTTSDITSALRSENIESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V    I ++  TA    +       +          +     ++           
Sbjct: 219 -----VRNDQIVMSVRTARSYNQAEDFEYLVVKRGSDNSPIYLKDVADVYIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     +        ++          ++  +      S + 
Sbjct: 274 KSDGVVNVSMGIVPQSDANPLEVADLVHKQVEDIQQFLPEGTRLAIDYDSTVFIERSIAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQVRATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIENGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIPD 536
           G        F++ + +S++ S   A+++   +   +++     +            L   
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSKLLKANVKPNRFNRFVDRMFGRLEKA 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     ++      I+ S           +   +       +     R  D +    
Sbjct: 514 YRKMLAGALKWKWAAPLIILSCIGGSWGLMQQVPAQLTPSEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              ++ I +       G+          P            V   + +   
Sbjct: 574 MAANMDIVEERLMPLLGQGFLKSFSIQSPAFGGNAGDQTGFVIMILEDWND 624



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDQIVMSVRTARSYNQAEDFEYLVVKRGSDNSPIYLKDVADVYIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             V +   P        V ++V K++ +I           +    +  + R        +
Sbjct: 279 VNVSMGIVPQSDANPLEVADLVHKQVEDIQQFLPEGTRLAIDYDSTVFIERSIAEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQVRATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +                  K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIENGEKPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   +     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSKLLKANVKPNR 498



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 697  ITTLILDITKTLGFFALFGIE--FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +    + +    GF  LF +    N+ +   ++ LIG    + +++ +      +L    
Sbjct: 880  VVMFTVPMGVFGGFLGLFFMNQGLNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDRG 936

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            I F   I  +    L   + T+       +P+ +    G     +    + FG+  A   
Sbjct: 937  IEFEKAIIDASARRLRPIMMTAFTTLAGAIPLIISTGAGYESRVAVGTVIFFGMGFATLV 996

Query: 812  SIFIAAPILLFI 823
            ++F+   +   I
Sbjct: 997  TLFVIPAMYRLI 1008


>gi|271501518|ref|YP_003334544.1| acriflavin resistance protein [Dickeya dadantii Ech586]
 gi|270345073|gb|ACZ77838.1| acriflavin resistance protein [Dickeya dadantii Ech586]
          Length = 1046

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/652 (10%), Positives = 167/652 (25%), Gaps = 45/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 25  RPIATTLLMIAILLAGIV-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 70

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  S   +     V   +   
Sbjct: 71  PDVMTSAVTAPLEHQFGSMSGLKQMSSQSSGGSSVITLQFQLSLSLDVAEQDVQAAINAA 130

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D       +        +++   +        +    I  +   +I   E    
Sbjct: 131 TNLLPTDLPFPPTYSKVNPADPPIMT-LAVTSTALPLTQVQDMIETRIAQKISQVEGVGL 189

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     ++  +       N +     F              
Sbjct: 190 VTLAGGQRPSVRIKLNPGALASYGLSSESVRTAITAANVNTPKGSFDGPA---------- 239

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V +S      +  ++         +                  + +          
Sbjct: 240 --RSVTLSANDQMRSLDDYRQLIISWKNN--------APVRLQDVATVEQAAENTHLAAW 289

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    L   L+A         +          S    
Sbjct: 290 ANQHQAIVLNIQRQPGANVIATADHIRNLLPSLKASLPKSVDVALLTDRTTTIRASVEDV 349

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 350 QFELILAIALVVMVIYLFLRNAVATLIPSIAVPLSLVGTFAAMYFLGFSVNNLTLMALTI 409

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     + +    +   G      TI     + +   + L F G 
Sbjct: 410 ATGFVVDDAIVVIENIARYIEQGEKPLQAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 469

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK----KMKSIDINPLSRFFLIP 535
             G   R FA+T+ +SILIS   ++++   M   ++ +     + +    +      +I 
Sbjct: 470 IIGRLFREFAVTLAVSILISAVVSLTLTPMMCARLLSHHSLSQQNRFTRASERFFDTVIA 529

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                         + +S+  S   + +L    +  G        +       V  S   
Sbjct: 530 WYGRGLTRVLSHPWITLSVALSTLVLTVLLYIVIPKGFFPIQDNGI---IQGTVQASQTI 586

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           S          +      +        +   D    +     ++  +  +  
Sbjct: 587 SFSGMADKQQQATTLIMQDPAVESVTSFIGVDGTNPSLNSGRLQINLKPLDE 638



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 85/270 (31%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S               I +K    + +     V+ +   ++L +      +   
Sbjct: 239 ARSVTLSANDQMRSLDDYRQLIISWKNNAPVRLQDVATVEQAAENTHLAAWANQHQAIVL 298

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +     +            +   + K +   +              +  ELI    
Sbjct: 299 NIQRQPGANVIATADHIRNLLPSLKASLPKSVDVALLTDRTTTIRASVEDVQFELI---- 354

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 355 --LAIALVVMVIYLFLR-NAVATLIPSIAVPLSLVGTFAAMYFLGFSVNNLTLMALTIAT 411

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 412 GFVVDDAIVVIENI---ARYIEQGEKPLQAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 468

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 469 DIIGRLFREFAVTLAVSILISAVVSLTLTP 498



 Score = 44.7 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 100/280 (35%), Gaps = 12/280 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               + L    G N G++    I+L   +   V LS + +  E      I+  +       
Sbjct: 765  QYRVVLEQHQGNNNGLESLNDIRLINTSGGVVPLSSIATVEERKGPLSINHIDQFPSTTI 824

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
               +        A   + +  +        ++  Q + +         +   I  V+ + 
Sbjct: 825  SFNVAPGYALGDAVKVIQQTQQSMQLPSDIITRFQGSTLAFQSA----LTSTIWLVVAAV 880

Query: 678  IAMLIYIWIRFK-WYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            +AM I + + ++ +   +  ++TL    +   L   A  G + N+ A+  ++ LIG    
Sbjct: 881  VAMYIVLGVLYESFIHPVTILSTLPTAGVGALLALMA-AGSDLNIIAIIGIILLIGIVKK 939

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + +++ D            ++    I ++        + T+MAA +S +P+      G  
Sbjct: 940  NAIMMID--FALAAEREQGMTPYQAIYQACLLRFRPILMTTMAALLSAIPLMFSTGVGAE 997

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +     I M  G+V++   ++F    I L       +  R
Sbjct: 998  LRRPLGICMVGGLVMSQVLTLFTTPVIYLLFDRLAHRLRR 1037


>gi|296137236|ref|YP_003644478.1| acriflavin resistance protein [Thiomonas intermedia K12]
 gi|295797358|gb|ADG32148.1| acriflavin resistance protein [Thiomonas intermedia K12]
          Length = 1042

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/549 (12%), Positives = 163/549 (29%), Gaps = 39/549 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I  +GL  A         + ++P       ++                +
Sbjct: 12  RPVLAMVVSLVILVLGLRSA-----GLLPVLQYP-YTQNAVVT--------VTTTYPGAD 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V  F+    +   +          S  Q  + IT +   +   +    ++   +  V
Sbjct: 58  ANLVASFITTPLENAIAQANGIDYMTSSSVQSSSTITANLRLNYDPDKALTEINTKVNSV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +K +L  +  + I  +      D +  +  + +  I R    ++   +    
Sbjct: 118 LNQLPAAAQKPVLTVSIGQTIDAMYIGFYSDVLKPN--QITDYITRSVQPRLQSVDGVQT 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L    DP++L     T A +       N          + ++ +      
Sbjct: 176 AEILGAKNFALRAWLDPNKLAAYGLTAADVYSALAANNYLSATGNTKGQMVQINVSANTD 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++    +SG                   ++    +  +        N+            
Sbjct: 236 LKS---LSG-----------------FRNMVVKTVDGQVVRLDQVANVTLGSDDYDSSVA 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    +     +   ++          +   +      S    
Sbjct: 276 FDGKSSVFVGIQVAPGANLLDVVARVRKVFPDIQQQLPAGLKGQIVYDSTKFVTSSIDEV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +V  V+F+ +   +  ++   +I L+++ T  ++  LG ++ L ++  IVL
Sbjct: 336 IKTLVEAVLIVTAVVFIFLGSLRSVIIPLVAIPLSIVGTFTIMLALGYSINLLTLLSIVL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E I     +  S   +         + I    I  +   V + F G 
Sbjct: 396 AIGLVVDDAIIVVENISRHLEEGMSRHDAAVRAARELANPIIAMTIVLVAVYVPIGFMGG 455

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FA T+  +++IS   A+++   M   +++    +S         FL      
Sbjct: 456 LTGALFTEFAFTLVGTVVISAIIALTLSPMMCSKLLKAPDPQSHSWQDRLVLFLDHSFDR 515

Query: 540 IQFMRARFW 548
           +     R  
Sbjct: 516 LHNRYERTL 524



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 75/188 (39%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           +V   +++++   +    + ++         E+I+  +  V+I    + I++        
Sbjct: 303 KVFPDIQQQLPAGLKGQIVYDSTKFVTSSIDEVIKTLVEAVLIVTAVVFIFLGSLRSVII 362

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L AI    L I  T       G   NL  + +++  IG  V+D ++V + +    +   
Sbjct: 363 PLVAI---PLSIVGTFTIMLALGYSINLLTLLSIVLAIGLVVDDAIIVVENI---SRHLE 416

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             +S  D   ++  E     +  ++      +P+   G   G++   FA  +   +V++A
Sbjct: 417 EGMSRHDAAVRAARELANPIIAMTIVLVAVYVPIGFMGGLTGALFTEFAFTLVGTVVISA 476

Query: 810 SSSIFIAA 817
             ++ ++ 
Sbjct: 477 IIALTLSP 484



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 88/272 (32%), Gaps = 14/272 (5%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              +                   +   +   V LS V     S+Q   I+           
Sbjct: 746  YKVIPQVAQKYRLNASQLQHYYIRTASGAMVPLSTVVHLTSSVQPETINHFQQLNSATIQ 805

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                       A   ++ + K+ +           +     +    ++  G      + I
Sbjct: 806  GVSLPTIAQGQALDDLVTLAKRTLPVGYSYDFAGPSRQFEQETGGLVLTFGF-----AMI 860

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVN 735
             + + +  +F+ +   +  + ++ + I+  L F    +     N+     ++TLIG    
Sbjct: 861  IIFLALSAQFESFRDPVIILVSVPMAISGALLFINLGIGHATLNIYTEVGLVTLIGLISK 920

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI 794
              +++ +       L     S R+ I+ +    L   + T+ A  + V+P+    G   +
Sbjct: 921  HGILIVEFAN---NLQREGRSKREAIEHAAGMRLRPILMTTAAMVLGVMPLIFASGAGAV 977

Query: 795  GSF--AIPMAFGIVVAASSSIFIAAPILLFIY 824
              F   + +A G+ +    ++F+   + + + 
Sbjct: 978  SRFNMGLVIATGLSIGTLFTLFVVPAMYMLLG 1009


>gi|197122045|ref|YP_002133996.1| acriflavin resistance protein [Anaeromyxobacter sp. K]
 gi|196171894|gb|ACG72867.1| acriflavin resistance protein [Anaeromyxobacter sp. K]
          Length = 1047

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/630 (12%), Positives = 174/630 (27%), Gaps = 40/630 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V++  +I   GL       + Q                                
Sbjct: 9   RRPVIAVVVNLVIVIAGLQAIRTLNVRQYPRSENAQIT--------------VTTTYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    + + +            +Q  + I      +        ++   +  
Sbjct: 55  NAELVRGFITTPLERVIASADGIDYLESESKQNVSIIRARLRLNYDSNRALAEIGSKIDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  ++   T          +   + +    E +  ++R    ++   E   
Sbjct: 115 VRGDLPPEAEVPVVGIETADSQFASAYLSFSSKFLKQ-NEITDYLVRVVQPRLSSIEGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  + A++       N                 G   
Sbjct: 174 RADILGARTFAMRVWLRPDRMAALNVSPAQVREALARNNYQAA------------VGQTK 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++      +   F          +   E            ++           
Sbjct: 222 GSLVQVNLTANTDLRSVREFQQ--------LVVRERDGAIVRLGDVADVALGAEDYDAEV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             T               +    I+        ++         +V          +   
Sbjct: 274 NFTGETAVFVGIWALPDANSLDVIKRVRAEMGAMQTQIPEQIKAVVAYDATAYIQDAIKD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A    +V+IV+F+ +   +  LV   +I ++++  + L+   G TL L ++  IV
Sbjct: 334 VEHTLAETLVIVVIVIFLFLGSLRSVLVPVVAIPVSLVGAVFLMQAFGFTLNLLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +    R+ ++   +   G       +    IT       + F G
Sbjct: 394 LSVGLVVDDAIVVVENVERHLREGKTRMEAALAGVRELVGPVIAMTITLAAVYTPIAFQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
              G   R FA+T+  ++ IS   A+++   M    +    + K +       F  + D 
Sbjct: 454 GLTGSLFREFALTLAGAVTISGVVALTLSPMMSAHLLREGGEAKGLARLLERGFERVRDV 513

Query: 538 IAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            A    ++ +  G   +   +I  +           +       + +        S +  
Sbjct: 514 YARHLEKSLQARGAIYAAWVAIILLVGAMFTMAPRELAPTEDQGVVMGIVNTPSNSTLEQ 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            + + +  + S              Q   G
Sbjct: 574 LVPNTKAVNRSLMEMPEAGFTFQITQPTGG 603



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 85/233 (36%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D           F+        +S+   + +      +   +P 
Sbjct: 254 VRLGDVADVALGAEDYDAEVNFTGETAVFVGIWALPDANSLDVIKRVRAEMGAMQTQIPE 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                         ++ I+     +  + + ++I I++        L  +  + + +   
Sbjct: 314 QIKAVVAYDATAYIQDAIKDVEHTLAETLVIVVIVIFLFLGSLRSVLVPVVAIPVSLVGA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +     FG   NL  + A++  +G  V+D +VV + + ++++   T +   +     + E
Sbjct: 374 VFLMQAFGFTLNLLTLLAIVLSVGLVVDDAIVVVENVERHLREGKTRM---EAALAGVRE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +G  +  ++       P+A  G   GS+   FA+ +A  + ++   ++ ++ 
Sbjct: 431 LVGPVIAMTITLAAVYTPIAFQGGLTGSLFREFALTLAGAVTISGVVALTLSP 483



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 64/185 (34%), Gaps = 25/185 (13%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI--------- 716
             K +   +++ + + + +  +F  +   L  +   +       G  AL  +         
Sbjct: 842  NKFLPAFLLAIVLIFLVLAAQFNSFRDPLVILAGSVP--LGMFGALALVFLKMPNPQMPF 899

Query: 717  -------EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                     N+ +   ++TL+G    + +++ +      KL    +S  + + ++    L
Sbjct: 900  FTDGWTTTLNVYSQVGLVTLVGLVAKNGILIVEFAN---KLQEQGLSKVEAVRQAAVTRL 956

Query: 770  GRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ A     LP+    G       S  + +  G+ V  + ++     I + I   
Sbjct: 957  RPILMTTFATVFGHLPLTYVTGPGAHARNSIGLVLVAGMTVGTAFTLLFLPSIYVLIARD 1016

Query: 827  RAKNA 831
              K A
Sbjct: 1017 HRKEA 1021


>gi|242310098|ref|ZP_04809253.1| multidrug resistance protein mexb [Helicobacter pullorum MIT
           98-5489]
 gi|239523395|gb|EEQ63261.1| multidrug resistance protein mexb [Helicobacter pullorum MIT
           98-5489]
          Length = 1040

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 62/504 (12%), Positives = 145/504 (28%), Gaps = 38/504 (7%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKK-EGIG 87
             ++++P   P             + +++           +       L + +   E + 
Sbjct: 31  LPIEQYPKVTP-------------TQVIVSGSYPGATAQTVSTSVVSVLENSINGVEDMI 77

Query: 88  VFSMRQIQN----KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
                   +     I + F++    +     V   +Q V S+L  + ++  +        
Sbjct: 78  YIQSSSPSSGANFTINVFFSNEANPDMAVVNVNNRVQSVLSQLPSEVQRLGITVQKGSTA 137

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            + L     +      I      +   +D++                  +    DP++L 
Sbjct: 138 VVGLYHIYSNNPNHDKIYIENYALLNIVDELKRISGI-NVELWSLQTYAMRIWLDPNKLL 196

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
               T  ++       N+      FG   +  S+    +    +                
Sbjct: 197 TYNLTPLEVISKIEEQNSQFAPGKFGAEPIAQSEFTYNITTKGL--------------FT 242

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +    +                 I       L               + +   +   
Sbjct: 243 SKEEFENILIRSNPDGSSLRLKDLARIELGAQDYLQSNFYNDIPSVPIRVTLQPGANMLE 302

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
                      L              R       S      T      LV++V+++ +  
Sbjct: 303 ASNAVNEQMERLSQKFPEGMQYSNPFRPTEFITASMEEVVKTFFEAIILVVLVIYLFLQN 362

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  ++   +I +++I T A L   G ++ L ++ G++L IG+ VD  I+V E +     
Sbjct: 363 LRATIIPIIAIPVSIIGTFAGLYAFGFSINLLTLFGLILAIGIVVDDAIIVIENVERIMH 422

Query: 444 KNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILIS 499
               +V  +           +    +      + + F G   G   + FAIT+ +S++IS
Sbjct: 423 TEHLNVKEATIKSMKEITGPVIAIVLVLSAVFIPVAFMGGFSGEIYKQFAITIVISVVIS 482

Query: 500 MFTAISIVRAMMIFIIRYKKMKSI 523
              A+S+  A+    ++     +I
Sbjct: 483 GCVALSLTPALCAIFLKPTHKPAI 506



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 69/174 (39%), Gaps = 14/174 (8%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             G +  I   I + + +  ++ +W   L  ++ +   +        + G++ ++     +
Sbjct: 867  SGSIAFIFGLIFVFLILVAQYERWLMPLAVLSAVPFGVFGAALATWIRGLDNDIFFQVGL 926

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET---LGRSVYTSMAAFISV 783
            L LI  +  + +++         ++        +I+ +I          V TS+A  + V
Sbjct: 927  LVLIALAAKNAILII-----EFAMHLREKEGLSIIESAIGAAKLRFRPIVMTSLAFTLGV 981

Query: 784  LPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA--KNAR 832
            LP+A+  G+      S +  +  G++ A   ++F      +++  +    KN R
Sbjct: 982  LPLALSSGAGALSRHSISTGVIGGMLAATFLAVFFIPLFYMYLARFSEWTKNKR 1035



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/207 (18%), Positives = 80/207 (38%), Gaps = 8/207 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    +E + +K  E +  S              E+++     +I+  + + +++   
Sbjct: 304 SNAVNEQMERLSQKFPEGMQYSNPFRPTEFITASMEEVVKTFFEAIILVVLVIYLFLQ-- 361

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 +  I  + + I  T      FG   NL  +  ++  IG  V+D ++V + +   
Sbjct: 362 -NLRATIIPIIAIPVSIIGTFAGLYAFGFSINLLTLFGLILAIGIVVDDAIIVIENV--E 418

Query: 748 MKLYTTSISFRDLIDKSINETLG---RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
             ++T  ++ ++   KS+ E  G     V    A FI V  M  + G +   FAI +   
Sbjct: 419 RIMHTEHLNVKEATIKSMKEITGPVIAIVLVLSAVFIPVAFMGGFSGEIYKQFAITIVIS 478

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           +V++   ++ +   +         K A
Sbjct: 479 VVISGCVALSLTPALCAIFLKPTHKPA 505


>gi|294341535|emb|CAZ89952.1| putative Acriflavin resistance protein [Thiomonas sp. 3As]
          Length = 1042

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 70/549 (12%), Positives = 163/549 (29%), Gaps = 39/549 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I  +GL  A         + ++P       ++                +
Sbjct: 12  RPVLAMVVSLVILVLGLRSA-----GLLPVLQYP-YTQNAVVT--------VTTTYPGAD 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V  F+    +   +          S  Q  + IT +   +   +    ++   +  V
Sbjct: 58  ANLVASFITTPLENAIAQANGIDYMTSSSVQSSSTITANLRLNYDPDKALTEINTKVNSV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +K +L  +  + I  +      D +  +  + +  I R    ++   +    
Sbjct: 118 LNQLPAAAQKPVLTVSIGQTIDAMYIGFYSDVLKPN--QITDYITRSVQPRLQSVDGVQT 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L    DP++L     T A +       N          + ++ +      
Sbjct: 176 AEILGAKNFALRAWLDPNKLAAYGLTAADVYSALAANNYLSATGNTKGQMVQINVSANTD 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++    +SG                   ++    +  +        N+            
Sbjct: 236 LKS---LSG-----------------FRNMVVKTVDGQVVRLDQVANVTLGSDDYDSSVA 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    +     +   ++          +   +      S    
Sbjct: 276 FDGKSSVFVGIQVAPGANLLDVVARVRKVFPDIQQQLPAGLKGQIVYDSTKFVTSSIDEV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +V  V+F+ +   +  ++   +I L+++ T  ++  LG ++ L ++  IVL
Sbjct: 336 IKTLVEAVLIVTAVVFIFLGSLRSVIIPLVAIPLSIVGTFTIMLALGYSINLLTLLSIVL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E I     +  S   +         + I    I  +   V + F G 
Sbjct: 396 AIGLVVDDAIIVVENISRHLEEGMSRHDAAVRAARELANPIIAMTIVLVAVYVPIGFMGG 455

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FA T+  +++IS   A+++   M   +++    +S         FL      
Sbjct: 456 LTGALFTEFAFTLVGTVVISAIIALTLSPMMCSKLLKAPDPQSHSWQDRLVLFLDHSFDR 515

Query: 540 IQFMRARFW 548
           +     R  
Sbjct: 516 LHNRYERTL 524



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 75/188 (39%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           +V   +++++   +    + ++         E+I+  +  V+I    + I++        
Sbjct: 303 KVFPDIQQQLPAGLKGQIVYDSTKFVTSSIDEVIKTLVEAVLIVTAVVFIFLGSLRSVII 362

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L AI    L I  T       G   NL  + +++  IG  V+D ++V + +    +   
Sbjct: 363 PLVAI---PLSIVGTFTIMLALGYSINLLTLLSIVLAIGLVVDDAIIVVENI---SRHLE 416

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             +S  D   ++  E     +  ++      +P+   G   G++   FA  +   +V++A
Sbjct: 417 EGMSRHDAAVRAARELANPIIAMTIVLVAVYVPIGFMGGLTGALFTEFAFTLVGTVVISA 476

Query: 810 SSSIFIAA 817
             ++ ++ 
Sbjct: 477 IIALTLSP 484



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 88/272 (32%), Gaps = 14/272 (5%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              +                   +   +   V LS V     S+Q   I+           
Sbjct: 746  YKVIPQVAQKYRLNASQLQHYYIRTASGAMVPLSTVVHLTSSVQPETINHFQQLNSATIQ 805

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                       A   ++ + K+ +           +     +    ++  G      + I
Sbjct: 806  GVSLPTIAQGQALDDLVTLAKRTLPVGYSYDFAGPSRQFEQETGGLVLTFGF-----AMI 860

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVN 735
             + + +  +F+ +   +  + ++ + I+  L F    +     N+     ++TLIG    
Sbjct: 861  IIFLALSAQFESFRDPVIILVSVPMAISGALLFINLGIGHATLNIYTEVGLVTLIGLISK 920

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI 794
              +++ +       L     S R+ I+ +    L   + T+ A  + V+P+    G   +
Sbjct: 921  HGILIVEFAN---NLQREGRSKREAIEHAAGMRLRPILMTTAAMVLGVMPLIFASGAGAV 977

Query: 795  GSF--AIPMAFGIVVAASSSIFIAAPILLFIY 824
              F   + +A G+ +    ++F+   + + + 
Sbjct: 978  SRFNMGLVIATGLSIGTLFTLFVVPAMYMLLG 1009


>gi|254457850|ref|ZP_05071277.1| multidrug efflux RND transporter MexF [Campylobacterales bacterium
           GD 1]
 gi|207085243|gb|EDZ62528.1| multidrug efflux RND transporter MexF [Campylobacterales bacterium
           GD 1]
          Length = 1021

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 164/570 (28%), Gaps = 30/570 (5%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
             +  +P   P                         V   +    ++  + +K       
Sbjct: 4   LPISEYPDVAPPTV---------NVSATYTGANAFVVEETVTRVLEDKLNGIKGVIYMDS 54

Query: 90  SMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
           S     +  I + F      +  A  V   +    + L  +  +  ++        + + 
Sbjct: 55  SSASSGSSSINVYFEPGYDIDIGAVDVQNKVSTATASLPSEVTQQGVIVDKRSPSLVCII 114

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
             N D         S  +    +D++   +   +          +    DP +L+ L  T
Sbjct: 115 AINGDD-RYDGSFLSNFVNINVLDEVKRIQGVGKAENMGEKKYSIRIWLDPDKLKALNMT 173

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
             ++       N        G     D    ++ +  K  +S +              + 
Sbjct: 174 PMEVIQAVQSQNKQASIGKIGGNPTFDDQKQEFTLTTKGRLSEVD-------------EF 220

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
              +   +             I           +               + +     +  
Sbjct: 221 ENIVLKYKKDGSLVHLSDVSKIELGSESYDWNAISAKRPTGLIGVYQLGEANALDIRKKV 280

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                 L +         V          +            GLV++++F+ +   +  +
Sbjct: 281 EETMVRLESRFPDGVTYSVPYDTTKYVKVAIDNVVTNLFTAIGLVILIIFIFLGSWRPTV 340

Query: 389 VADFSIFLNVILTLALLSLL-GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ- 446
           +A  +I +++I   A + L  G ++   ++ G++L IG+ VD  ILV E +     K   
Sbjct: 341 IASVTIPVSLIGAFAAMELAGGFSINFLTLFGLILAIGIVVDDAILVVENVEVIMYKEPE 400

Query: 447 -SVFCSLDMGFSRAYSTIFDSNIT---ALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
            ++   +          I  + +      I   +L    G   + FA+T+  ++L+S   
Sbjct: 401 LTMPQVVKKSMIELIGPIISTTLVLVAVFIPVSLLPGITGALYQQFALTIAFAVLVSSLN 460

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A+++  A+   II+ +K          +F L  D +  ++       V +     +    
Sbjct: 461 ALTLSPAISAIIIKRRKEGEEKFILFQKFDLFFDFLTSKYKALVTLLVKLRYFMILVMGG 520

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           + +     + I   G +         V ++
Sbjct: 521 IFYLTYYLFAITPTGFVPSEDKGVCMVSVN 550



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 98/245 (40%), Gaps = 6/245 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       +  D +  +       +   Q    +++   + +E    ++    P 
Sbjct: 234 VHLSDVSKIELGSESYDWNAISAKRPTGLIGVYQLGEANALDIRKKVEETMVRLESRFPD 293

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
               +      K  +  I   +  +  +   +++ I+I    W   + A  T+ + +   
Sbjct: 294 GVTYSVPYDTTKYVKVAIDNVVTNLFTAIGLVILIIFIFLGSWRPTVIASVTIPVSLIGA 353

Query: 708 LGFFALFG-IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                L G    N   +  ++  IG  V+D ++V + + + +      ++   ++ KS+ 
Sbjct: 354 FAAMELAGGFSINFLTLFGLILAIGIVVDDAILVVENV-EVIMYKEPELTMPQVVKKSMI 412

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E +G  + T++      +P+++     G++   FA+ +AF ++V++ +++ ++  I   I
Sbjct: 413 ELIGPIISTTLVLVAVFIPVSLLPGITGALYQQFALTIAFAVLVSSLNALTLSPAISAII 472

Query: 824 YDWRA 828
              R 
Sbjct: 473 IKRRK 477



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 52/144 (36%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   L  + ++ + I   +      G+  N  A   ++ L+  +  + +++ +  ++  
Sbjct: 867  SWILPLMILLSVPMVIAGAVAGLHTVGLPLNTFAQVGLVLLVALAAKNAILIVEFAKEQR 926

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIG--SFAIPMAFGI 805
                + I   +    +        + T ++    ++P+    G   I   S  I + FG+
Sbjct: 927  ---ESGIGIIESAINAGTLRFRAIMMTILSFLFGIIPLAFATGAGAITQMSIGIVLMFGM 983

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            + A   S      + + +   R K
Sbjct: 984  IAATFISTLFVPVLYVLLETMREK 1007


>gi|153835497|ref|ZP_01988164.1| acriflavin resistance plasma membrane protein [Vibrio harveyi HY01]
 gi|148867936|gb|EDL67144.1| acriflavin resistance plasma membrane protein [Vibrio harveyi HY01]
          Length = 1040

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 76/609 (12%), Positives = 175/609 (28%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S     + IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSSSVLGTSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPAKMGALKLTATDVMTVLNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                      +                 +    +  +   
Sbjct: 233 QVSNVAELEA--------------------LVVKTGEGDVIRLGDIAKVTLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLKLLPQLERNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ +S   A+++   M   +        K  + +          
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSKMLKANEEPSKFEQKVHHVLDGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +               I+F+   I   F        + KG + L   A    +L  
Sbjct: 513 YEKMLTAVMAHRPVIIAFAIIVFATLPILFKFIPSELAPSEDKGVVVLMGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 IQNTMNDVN 581



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +                   E            + +     +  +  ++   +
Sbjct: 251 DVIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLKLLPQLERNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + +  ++ +A+ +L+ I +    +   +  I T+ L + 
Sbjct: 311 PSNIKMNVMYDSTIAINESIHEVVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +     + ++
Sbjct: 488 MLKANEEPSK 497



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 68/183 (37%), Gaps = 7/183 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     +  + ++ L +   L 
Sbjct: 830  YNHDYMGEARQFVTEGSALYATFGLALAIIFLVLAIQFESIRDPIVIMVSVPLAVCGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++        +S  D + ++    L
Sbjct: 890  ALAWGTASMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAVMEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++ + 
Sbjct: 948  RPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLAEK 1007

Query: 827  RAK 829
               
Sbjct: 1008 HKP 1010


>gi|78222861|ref|YP_384608.1| acriflavin resistance protein [Geobacter metallireducens GS-15]
 gi|78194116|gb|ABB31883.1| Acriflavin resistance protein [Geobacter metallireducens GS-15]
          Length = 1037

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/543 (11%), Positives = 144/543 (26%), Gaps = 38/543 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +   GLL        +  ++  P+                    L   
Sbjct: 9   RRPVMTSLVMLAVMLFGLLA-----YSKLPVNDLPTVDYPTIQ---------VSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   + +  +   S +        +     ++IT+ F   R  +  A  V   +  
Sbjct: 55  NPDTMAASVALPLEREFSTIAGVDSMNSTNGLGTSRITIKFTLERDIDAAAQDVQAAISR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D                VL    +          +         +I +     
Sbjct: 115 AQRQLPQDMPAPPSFQKVNPADQAVLY-LALSSPTLPLSTVNDYAEAMIAQRISMVNGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + DP  L        +++      N +        +    +     
Sbjct: 174 SVQVNGSQKYAVRVQVDPKALAARKIGIDEVAQALERGNVNLPTGTLQGKHEALTIQTSG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                     + K    +                 +   +       
Sbjct: 234 QL--------------------YSAKEYEPLIVAYRNGSPVRLGEIGKVIDSVENDKVAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    +     L    R+         +     G    S + 
Sbjct: 274 WYKQTRAIILAIQRQPGTNTIEVVNRIKELIPHFRSQLPASVDLNILFDRTGGIKESVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV++V+F+ +      L+   ++ L+++   + + L+G ++   ++  + 
Sbjct: 334 VKFTMMLTICLVILVIFLFLRNLPATLIPSLALPLSIVGAFSAMYLMGFSVNNITLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E I     K +    +   G      TI    I+ +   + + F  
Sbjct: 394 LSVGFVVDDAIVMLENIVRHLEKGEDPREASLRGSREIGFTIVSMTISLVAVFIPVLFMQ 453

Query: 482 GGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FA+T+ L+ILIS F ++S+   +    +R    +                 
Sbjct: 454 GMLGRLLHEFAVTISLAILISGFVSLSLTPMLCSRFLRPHGEQRHGRFYNFMERFFNGMY 513

Query: 539 AIQ 541
              
Sbjct: 514 RFY 516



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 70/204 (34%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q          R+ E++    +++     +         I   +       ++   +
Sbjct: 285 IQRQPGTNTIEVVNRIKELIPHFRSQLPASVDLNILFDRTGGIKESVADVKFTMMLTICL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +L+           L     L L I        L G   N   + A+   +G+ V+D +
Sbjct: 345 VILVIFLFLRNLPATLIPSLALPLSIVGAFSAMYLMGFSVNNITLMALTLSVGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIG 795
           V+ + +   ++        R+   +   E     V  +++     +P+    G    ++ 
Sbjct: 405 VMLENI---VRHLEKGEDPREASLRGSREIGFTIVSMTISLVAVFIPVLFMQGMLGRLLH 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ ++  I+++   S+ +   +
Sbjct: 462 EFAVTISLAILISGFVSLSLTPML 485



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 72/204 (35%), Gaps = 8/204 (3%)

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---R 687
             T + E V               T                + V+I    ++IYI +    
Sbjct: 816  DTPLSEAVSAIEKVSRETLPATFTTSFQGVAQAYQQSTTGLTVLIIMAIVVIYIVLGILY 875

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              +   +  ++ L       L    +FG E NL     ++ LIG    + +++ D   + 
Sbjct: 876  ESYIHPITILSGLPSAGFGALITLMIFGKELNLYGFVGLIMLIGIVKKNAIMMIDFALE- 934

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                +  +   + I +         + T+MAA +  LP+A+    G     +  + +  G
Sbjct: 935  -AQRSEGMPPLEAIHQGALVRFRPIMMTTMAALMGTLPIALGIGAGAEARRTLGLSVVGG 993

Query: 805  IVVAASSSIFIAAPILLFIYDWRA 828
            +VV+   +++I   I  ++   + 
Sbjct: 994  LVVSQLLTLYITPVIYYYMDRMQE 1017


>gi|53714396|ref|YP_100388.1| putative aminoglycoside efflux pump [Bacteroides fragilis YCH46]
 gi|60682416|ref|YP_212560.1| putative aminoglycoside efflux pump [Bacteroides fragilis NCTC
           9343]
 gi|253564893|ref|ZP_04842349.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265766153|ref|ZP_06094194.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52217261|dbj|BAD49854.1| putative aminoglycoside efflux pump [Bacteroides fragilis YCH46]
 gi|60493850|emb|CAH08641.1| putative aminoglycoside efflux pump [Bacteroides fragilis NCTC
           9343]
 gi|251946358|gb|EES86735.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253821|gb|EEZ25286.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301163879|emb|CBW23434.1| putative aminoglycoside efflux pump [Bacteroides fragilis 638R]
          Length = 1048

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 69/645 (10%), Positives = 175/645 (27%), Gaps = 43/645 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   +    G+ 
Sbjct: 31  LPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQAPSQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++             I  S       +D I       +          +    +P +L  
Sbjct: 138 LMTLTLMSSDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAEPDKLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T   +       N      + G + ++  D     +  +  +S +            
Sbjct: 198 FGLTVQDLQNALKDQNRESAAGVLGQQPVKGLD-VTIPITTQGRLSTVE----------- 245

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +    +       +                +    
Sbjct: 246 --QFENIVIRANTNGSIIRLRDVARVSLEASSYSTESGINGKNAAVLGIYMLPGANAMEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            ++       +           V          S      T      LV++V+++ +   
Sbjct: 304 AKSVKEAMDEISKNFPEGLSYEVPFDMTTYISESIHEVYKTLFEALILVVLVVYLSLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +     +
Sbjct: 364 RATLIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENVERIMEE 423

Query: 445 NQ-SVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFFG--GGAVRGFAITMGLSILISM 500
            +   + +     +  A + I  S +   +   V F  G  G   R F IT+ +S+LIS 
Sbjct: 424 EKLPPYEATKKAMNGLAGALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVLIST 483

Query: 501 FTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
             A+++   M   I        +    + I+             I       R    G  
Sbjct: 484 VVALTLSPVMCSLILKPDNGKKKNIVFRKINHWLNVGNHKYVIAIRRVIGNPRRVLAGFG 543

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           ++     +           ++ +G  ++ +       L   R   +              
Sbjct: 544 VVLIGILLIHRLIPTSFLPVEDQGYFKIELELPEGATLERTREVTDRAITYLEKNPYIAY 603

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            +N          +       + +   +  +   +  I +     
Sbjct: 604 VQNVTGSSPRVGSNQARSELTVILKPWEDRKDTSIDEIMSNVRHD 648



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 94/267 (35%), Gaps = 16/267 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +    + + AN    +  +R                         L            V 
Sbjct: 245 EQFENIVIRANTNGSIIRLRDVARVSLEASSYSTESGINGKNAAVLGIYMLPGANAMEVA 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRK---GIVGVIISAIAMLIYIWIRF-KWY 691
           + VK+ + EI        +  V   ++  +          +  + I +++ +++    W 
Sbjct: 305 KSVKEAMDEISKNFPEGLSYEVPFDMTTYISESIHEVYKTLFEALILVVLVVYLSLQSWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNM 748
             L  I  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV    +R+ +  
Sbjct: 365 ATLIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENVERIMEE- 423

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
                 +   +   K++N   G  + TS+      +P+  + G  G +   F I +A  +
Sbjct: 424 ----EKLPPYEATKKAMNGLAGALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           +++   ++   +P++  +        +
Sbjct: 480 LISTVVAL-TLSPVMCSLILKPDNGKK 505



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVWVCGLENDVYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDRGGDLIQSAIHAAQLRFRPILMTSLAFVLGMLPMVLATGPGSASRAAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            + A    I +     + +Y  +AK   +
Sbjct: 1005 IFAIVVGIILVPFFFVLVYKTKAKLKNV 1032


>gi|300773465|ref|ZP_07083334.1| multidrug efflux pump BpeF [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300759636|gb|EFK56463.1| multidrug efflux pump BpeF [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 1067

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/573 (12%), Positives = 154/573 (26%), Gaps = 45/573 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G++  L     +  L +FP   P     + L              
Sbjct: 8   RPVLATVISILLVILGVMGML-----RLPLQQFPDIAPPAVQVMAL-------------Y 49

Query: 63  DDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     +    IT+ F      +  A  V  
Sbjct: 50  PGANAETVLRAVAPSLEESINGVENMSYMSSTASNDGSLMITVYFKLGTDPDQAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGI 176
            +    S+L  +  +  + T  ++   I++     +          +       I ++  
Sbjct: 110 RVAQATSQLPSEVIQAGITTAKQQNSLIMVLDLYTEDESRYDQTFLNNYAQINIIPELKR 169

Query: 177 SESTIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                Q L         +    DP ++     T +++       N       FG      
Sbjct: 170 ISGVGQALIFGGSKDYSMRVWLDPKQMASYKLTPSEVMAAIQDKNVEAAPGKFGESSRES 229

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +          +                       I                 +     
Sbjct: 230 FEFVIKYKGKLNQ----------------PADYENIIIRSNADGSILRLKDVARVELGAY 273

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +             A  + N        L              +V      A 
Sbjct: 274 TYGSNTRINEKSGINIGIMQLAGSNANEIQIAIQQLMEKAEKDFPKGVKYLVLYNTKDAL 333

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S S  + T      LV +V+F+ +   +  L+   ++ + +I T   + L G ++ L 
Sbjct: 334 DQSISQVQHTLIEAFLLVFLVVFLFLQDFRSTLIPAIAVPVAIIGTFFFMQLFGFSINLL 393

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  ++L IG+ VD  I+V E +  +          +     S     I    +      
Sbjct: 394 TLFALILAIGIVVDDAIVVVEAVHAKMEHTHLPPKLATTSAMSEITGAIISITLVMSAVF 453

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F  G      R FA T+ ++I+IS   A+++  A+    ++  +        +S  
Sbjct: 454 LPIGFMEGSTGVFYRQFAFTLAIAIVISAINALTLSPALCALFLKAPQHSEHPAPKVSFK 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                   + F R     VG            L
Sbjct: 514 EKFFAGFNVGFDRLTKNYVGSLRFLVKYKWVGL 546



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 79/255 (30%), Gaps = 16/255 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V ++ +            S  N                   A   V E+  +++ 
Sbjct: 796  KFGEMVPINTLVRLNRVYGPETASRYNLFNSIGINAIPNPGFSSGDAIRAVEEVAAQQLP 855

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTL 700
                      T+        E+   G   VI     + +Y  +      +   L  I ++
Sbjct: 856  SGFTYEFSGMTK-------EEITSGGQSTVIFILCLVFVYFLLAAQYESYIIPLAVILSI 908

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               I        + GI  N+    A++ LIG    + +++ +     ++   T +S    
Sbjct: 909  PTGIFGVFAAIGMTGISNNIYVQVALVMLIGLLAKNAILIVEFA---IQRRRTGLSIAAS 965

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAA 817
              ++    L   + TS+A  + ++PM    G         +I  A G+       +FI  
Sbjct: 966  AFEAAKLRLRPIIMTSLAFIVGMIPMMGATGPSAQGNHSISIAAAGGMFSGVVLGLFIIP 1025

Query: 818  PILLFIYDWRAKNAR 832
             + +     + K ++
Sbjct: 1026 VLFIIFQSLQEKVSK 1040



 Score = 38.9 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 50/122 (40%), Gaps = 7/122 (5%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + I  T  F  LFG   NL  + A++  IG  V+D +VV + +    
Sbjct: 361 DFRSTLIPAIAVPVAIIGTFFFMQLFGFSINLLTLFALILAIGIVVDDAIVVVEAVH--A 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           K+  T +  +     +++E  G  +  ++      LP+    GS       FA  +A  I
Sbjct: 419 KMEHTHLPPKLATTSAMSEITGAIISITLVMSAVFLPIGFMEGSTGVFYRQFAFTLA--I 476

Query: 806 VV 807
            +
Sbjct: 477 AI 478


>gi|78223717|ref|YP_385464.1| acriflavin resistance protein [Geobacter metallireducens GS-15]
 gi|78194972|gb|ABB32739.1| Acriflavin resistance protein [Geobacter metallireducens GS-15]
          Length = 1041

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/614 (10%), Positives = 173/614 (28%), Gaps = 46/614 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +   +  ++  ++  +G+         +  ++ +P+                  +V    
Sbjct: 9   KRPIFAAVMMLVLVTLGIFS-----YRRLSVEMYPNVEFPV-----------ISIVTKYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + V   +    +E  + +          R+  + + + F        ++ +    +
Sbjct: 53  GASPETVEREVSKRIEEAVNQIAGVKHVFSYSRESVSTVVVQFRLEERINEVSQEARAKI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V  +L    +  ++       + +V     +        E +  + ++   +      
Sbjct: 113 NSVRGELPTGIEDPVIQKIDFNALPVV--SLALQSGSLSQRELTTLMDKRIRKRFEGVAG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         ++    DP RL  L      +       N +                 
Sbjct: 171 VGKVEVVGGAKREVSVHVDPVRLESLGLGVNDVVAGLQSENVNTPLGR------------ 218

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                      G           P        +   + G R         +   +     
Sbjct: 219 --------ITRGGVEYPLRIEGKPDRVADYRAMVIAQKGGRPVTLGEVATVTDGVEERRT 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++            ++  +    ++        +R    P     +          S 
Sbjct: 271 LALVNGAPAIGIDIYKQSGANQVEVVDNVRKTMEKVRRELPPGVELSLVRDGSIMTRQSL 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  + T  +   L +I++F+ +   +  ++   ++ ++VI    +++ +G TL + ++  
Sbjct: 331 ADVEETLVVGGILTIIIVFLFINSWRSTVITGVTLPISVISAFIVMNAMGMTLNVMTLMA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L IGL +D  I+V E I       +    +   G S     +F + ++ L   V + F
Sbjct: 391 LSLAIGLLIDDAIVVRENIVRHLEMGKDHMEASRFGTSEIGLAVFATTMSILAVFVPVAF 450

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G     F IT+  ++L+S+F + ++   +                         +
Sbjct: 451 MKGIVGRFFFPFGITVSFAVLVSLFVSFTLDPMLSSRWHDPAIH---AHGKRKGLARWLE 507

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                F R+                 ++ T G+ + +       L        D S  + 
Sbjct: 508 TFNDWFDRSADRYRLAIAWALDHRKTVVATAGITFFLGLALMGTLESSFMVDEDTSEFQV 567

Query: 597 NLESLQIGDISFQN 610
           + +S     IS   
Sbjct: 568 SFKSAPEASISETE 581



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 70/158 (44%), Gaps = 6/158 (3%)

Query: 672  GVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             ++++ + + + +  +F+ +F  L  + +L L I    G   L G   N+  +  ++ L+
Sbjct: 863  SLMLAVVFVFLILAAQFESFFEPLAIMLSLPLSIVGMAGMLKLTGDTINIMVLIGLIMLM 922

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ D  +  +      +  R+ I ++    L   V T++A    +LP+ +  
Sbjct: 923  GLVTKNAILLVDYAK--VLRRRDGLPRREAIIEAGRTRLRPIVMTTLAMIFGMLPLFLGI 980

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              GG      A  +  G++ ++  ++ +   +  ++ D
Sbjct: 981  GAGGEGRAPMARAVIGGLITSSLLTLIVVPVMYTYMDD 1018



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 88/262 (33%), Gaps = 15/262 (5%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                I  KGG  + +     V   V      +L  G  +      +++   +++     
Sbjct: 240 YRAMVIAQKGGRPVTLGEVATVTDGVEERRTLALVNGAPAIGIDIYKQSGANQVEVVDNV 299

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                +V   +   +   +       T      +   L+  GI+ +II  + +       
Sbjct: 300 RKTMEKVRRELPPGVELSLVRDGSIMTRQSLADVEETLVVGGILTIIIVFLFIN------ 353

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +    TL + +          G+  N+  + A+   IG  ++D +VV    R+N
Sbjct: 354 -SWRSTVITGVTLPISVISAFIVMNAMGMTLNVMTLMALSLAIGLLIDDAIVV----REN 408

Query: 748 M-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAF 803
           + +         +      +E       T+M+     +P+A   G V      F I ++F
Sbjct: 409 IVRHLEMGKDHMEASRFGTSEIGLAVFATTMSILAVFVPVAFMKGIVGRFFFPFGITVSF 468

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            ++V+   S  +   +    +D
Sbjct: 469 AVLVSLFVSFTLDPMLSSRWHD 490



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/472 (8%), Positives = 118/472 (25%), Gaps = 24/472 (5%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS--FADSRFKENIADKVTLFLQGVN 123
                L      L   + +      ++    +             +++  ++    ++ + 
Sbjct: 580  TEDRLNRVLAAL-KGIPEIDHSYATIGAGDSGTVRDGLLYMKLKEKSARNRSQFEIERLV 638

Query: 124  SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             +                 I+      N+D              + +     I       
Sbjct: 639  RERLRQVAGITFSIEKVGVIASTAKPLNVDLKGDDIALLKKYAAQLKELMYTIPGIVDIS 698

Query: 184  LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                  + +     D  +      ++  +                  R +       Y  
Sbjct: 699  ATLEHDIPEYRLRVDREKALSAGVSSNDVVMSL-------------SRLVGGEAVTTYED 745

Query: 244  EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
            ED   +            +P   + +     D  G  +   +   +     A   +    
Sbjct: 746  EDGDAVDVRVRLPEGLRENPAQVRDLKISVPDGAGGTKLIPLASVSTETVAATPTEVNRR 805

Query: 304  TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                    + +  A +           +  + +  ++    +I           S     
Sbjct: 806  D----QSRLVTVSANLDRLPIGTAVKKVEGVSKKITMEPGYSINFSGEAEDMAESFGYMG 861

Query: 364  GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
             +  +    V ++L          L    S+ L+++    +L L G T+ +  + G+++ 
Sbjct: 862  ESLMLAVVFVFLILAAQFESFFEPLAIMLSLPLSIVGMAGMLKLTGDTINIMVLIGLIML 921

Query: 424  IGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
            +GL   + IL+ +  +    R       ++          I  + +  +   + LF    
Sbjct: 922  MGLVTKNAILLVDYAKVLRRRDGLPRREAIIEAGRTRLRPIVMTTLAMIFGMLPLFLGIG 981

Query: 480  FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
             GG      A  +   ++ S    + +V  M  ++               + 
Sbjct: 982  AGGEGRAPMARAVIGGLITSSLLTLIVVPVMYTYMDDLALWLRRKWRGEEQR 1033


>gi|262372315|ref|ZP_06065594.1| hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter
           [Acinetobacter junii SH205]
 gi|262312340|gb|EEY93425.1| hydrophobe/amphiphile efflux-1 (HAE1) family RND transporter
           [Acinetobacter junii SH205]
          Length = 1049

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/574 (13%), Positives = 162/574 (28%), Gaps = 40/574 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ M+   GLL           + +FP                     L   
Sbjct: 9   RNPIPGILLFIMLGLAGLL-----CFHWMKIQQFPDIELPMVT---------VSAALPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + L+       +++     +T  F   +  +   D V   +  
Sbjct: 55  APPQLETEVARKIENSIATLQGLRNQYTNIQDGVVTVTAEFQLEKPLQEAVDDVRNAVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D +  ++         I+       ++   A   S  +       +   +   
Sbjct: 115 VRSDLPADLRDPIVSKINLSGSPILTYTIQSPKMDEEA--LSWFVDYDIARAMLQVKGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  Q+  E DP +L  L  T   ++    L      G    +     S     
Sbjct: 173 AVARVGGVTRQVEVELDPEKLLALNATATDITRQLRLVQQDASGGQTKIGGSEQSIRTIA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   EI  + +                         R         I   +A      
Sbjct: 233 TVKTAAEIGAMDIAL--------------------SDGRHIRLDQVATIRDGIAERRSAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     +     S     +        L+A              V     +   
Sbjct: 273 LLNGQPVIGFEITRSKGASEVDVEKGVIEALDKLKASHP-DIKITEAFNFVKPVADNYKG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +  ++A  ++ L+++  L  +   G TL   ++  + 
Sbjct: 332 SMSLLYEGAILAILVVWLFLRDWRATIIAATALPLSILPALIGMYYFGFTLNTVTLLAMS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIIRHLRMGKTPYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F  T  L+I  S+  A  +   M  +I++    K  +    S    + D  
Sbjct: 452 GIAGKFFVQFGWTAALAIFASLLVARLLTPMMSAYILKPWIGKVENTAENSDADRLNDQG 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYG 572
             +  R R     +   +       L    +  G
Sbjct: 512 TSKLARDREKDGRVMRGYMHLVTWCLHHRWVTLG 545



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 75/244 (30%), Gaps = 6/244 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + + +   R + L  V +  + +     +              + +    V   + + 
Sbjct: 241 GAMDIALSDGRHIRLDQVATIRDGIAERRSAALLNGQPVIGFEITRSKGASEVDVEKGVI 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               K+    P   I         ++        +    + +A+L+       W   + A
Sbjct: 301 EALDKLKASHPDIKITEAFNFVKPVADNYKGSMSLLYEGAILAILVVWLFLRDWRATIIA 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L I   L     FG   N   + A+  ++G  V+D +V  + +   ++      +
Sbjct: 361 ATALPLSILPALIGMYYFGFTLNTVTLLAMSLVVGILVDDAIVEIENI---IRHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
             +   ++ +E     + T+       LP A   G        F    A  I  +   + 
Sbjct: 418 PYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFVQFGWTAALAIFASLLVAR 477

Query: 814 FIAA 817
            +  
Sbjct: 478 LLTP 481



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 84/220 (38%), Gaps = 8/220 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        ++     V   V +  T      T++ T I   ++ +EL     + ++
Sbjct: 818  NRLRNINFNIELNNQPLGDVAAKVDQLPTMKNLPPTVKRTNIGDAEVMQELFSSFGLAML 877

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               + + + + + FK +   +  +  L L +        L    F++ ++  ++ L+G +
Sbjct: 878  TGVLCIYVVLVLLFKDFLQPITILVALPLSLGGAFVLLLLAKSSFSMPSLIGLIMLMGIA 937

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ D     +       S  + +  + ++     + T++A    +LP+A  G   
Sbjct: 938  SKNSILLVD--YAIIARKEKDYSRFNALLDACHKRARPIIMTTLAMGAGMLPIA-LGIGT 994

Query: 794  IGSF----AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              SF    AI +  G++ +   S+ +   +  FI D   K
Sbjct: 995  DPSFRAPMAISVIGGLITSTFLSLLVIPVVYTFIDDINRK 1034


>gi|182679401|ref|YP_001833547.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182635284|gb|ACB96058.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1063

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/556 (12%), Positives = 157/556 (28%), Gaps = 33/556 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +    GL+           + ++P  +P          +          
Sbjct: 8   QRPRLATVIAIVTVIAGLVSLFV-----IPIAQYPDIVPP---------QVSVKTTYPGG 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
               V   +    +     + K            +  + +SF      +     V   +Q
Sbjct: 54  SAAVVESTVAQPIESQVIGVDKMIYMKSVSGDDGSYSLIVSFELGTDPDINTVNVNNRVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              SKL  D K+  +    +    + +      +     +  S       +D I  +   
Sbjct: 114 VALSKLPEDVKRQGVNVKKQSSALLGVIALYSPKETHDELFISNYATINLLDDIKSTPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    +  RL  L  TT  +       N        G R + +    Q
Sbjct: 174 GDAFLFAAQDYSVRAWVNTDRLTGLGLTTGDVINAINTQNVQAAVGRIGARPISNDQQLQ 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++ K  ++ I              +    +                 +    A +   
Sbjct: 234 LNIQTKGRLTSID-------------EFKKIVIRTNPDGSILRLEDVARLELGAANLDRS 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L                +   T++                    V          +  
Sbjct: 281 TRLNGGPATLISIYQSPGANALKTLDAVKKRLENAAKDFPEDLAWKVTYDPTTFVSATIE 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           +   T      LV++V+F+ +   +  L+   ++ +++I T  +L+ +G +    S+  +
Sbjct: 341 VVIHTLFEAFVLVVLVVFLFLGNLRATLIPTIAVPVSLIGTFIVLNAIGYSANTVSLLAM 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVL 477
           VL IG+ VD  I+V E +     ++  +  +   +          I  + +   +   V 
Sbjct: 401 VLAIGIVVDDAIVVVEAVEAVMEEHPELTPAQATIQAMAGITAPIIAITLVLLSVFVPVA 460

Query: 478 FFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F  G      R FA+T+ +S+++S   A+++  A+   ++R           +    +  
Sbjct: 461 FIPGISGVLFRQFAVTVAVSMVLSAINALTLSPALCALLLRPHHGPRRGPIGVLMRSIDW 520

Query: 536 DCIAIQFMRARFWGVG 551
                  + AR     
Sbjct: 521 VRDRYGNVVARLVRFS 536



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 65/169 (38%), Gaps = 9/169 (5%)

Query: 669  GIVGVIISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G   +I++   +  Y   + +   W   +  + ++ + +        L G+  +L A   
Sbjct: 869  GKTPIILAFAVLFAYLFLVALYESWSIPISVLLSVTIGLVAAFVGMVLAGVTLDLYAQIG 928

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG +  + +++ +  ++        +   +   +         + TS A  + + P
Sbjct: 929  MIVLIGLAAKNGILIVEFAKE---RREHGVPLLEAATEGARLRFRPVMMTSFAFILGLAP 985

Query: 786  MAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    G+ +    + +  +  G++ A+   IF+  P+ +     R +  
Sbjct: 986  LVFGVGAAMLARRNVSTAVFSGMIGASFIGIFVIPPLYVLFQGLRERLK 1034


>gi|325123333|gb|ADY82856.1| acriflavin resistance protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 1017

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 56/617 (9%), Positives = 157/617 (25%), Gaps = 43/617 (6%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L++       +  ++ FP+      +                   + V   +   
Sbjct: 1   MMMLSLMVLGLASWKRMTVEEFPNIDFPFVV---------VTTQYAGASPEAVESDITKK 51

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            ++  + +           +  + +   F         A  V   +  V ++   +    
Sbjct: 52  LEDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAPVTAQFRDEIDTP 111

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           ++         I+      +       + S  + ++ + Q+                 Q+
Sbjct: 112 IVQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVGNVNLLGDAKRQI 169

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
             +  P++L+       ++       N          +        Q  V          
Sbjct: 170 RIKVIPAQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQSKV---------- 219

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                            D+          F      +    A +                
Sbjct: 220 ----------IHPLAFGDLVIANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDI 269

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
              +  +    ++        L+          V   +      S      T    A L 
Sbjct: 270 LKSSDANVIKVVDQTYQTLEKLKDQMPAGLDYKVVADSSKGIRASIKDVVRTIIEGAALA 329

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + L IGL +D  I+
Sbjct: 330 VLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIV 389

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAI 490
           V E I       +    +   G       +  + +T +   + + F G   G     F +
Sbjct: 390 VRENIVRHTELGKDHVTAALEGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGV 449

Query: 491 TMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           T+  ++LISMF + ++   +                +    I         +    + + 
Sbjct: 450 TVSTAVLISMFISFTLDPMLSAHWKDPVKKKDNWLQRFFNHISNLLDRLTHVYEKLLKLA 509

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                   +                         KG +++         L   ++ L  +
Sbjct: 510 LRFRFITVIVAIASLFAALGLSKLIGTEFVPTPDKGEVRIQFETPVDSSLEYTQAKLHQV 569

Query: 602 QIGDISFQNFDGEKNFL 618
                 F +       +
Sbjct: 570 DQIIRQFPDVVSTYGVV 586



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 75/203 (36%), Gaps = 8/203 (3%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            +  + ++K   ++      +        I   +       +  +A+A+LI +     + 
Sbjct: 282 DQTYQTLEKLKDQMPAGLDYKVVADSSKGIRASIKDVVRTIIEGAALAVLIVLLFLGSFR 341

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +    TL + +  TL F   FG   N+  + A+   IG  ++D +VV    R+N+  +
Sbjct: 342 STVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVV----RENIVRH 397

Query: 752 TT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
           T           +   E     + T++      LP+A  GG +      F + ++  +++
Sbjct: 398 TELGKDHVTAALEGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTAVLI 457

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +   S  +   +     D   K 
Sbjct: 458 SMFISFTLDPMLSAHWKDPVKKK 480



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 86/267 (32%), Gaps = 10/267 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
              N  +  +    L + +N+            S                  +  +     
Sbjct: 742  NENKRMLPQDVQNLYINSNKTNAAGQNILVPLSAVATTEEKLGASQINRRDLEREVLIEA 801

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI 686
            + +     ++ +                      + ++       +  I+   + IYI +
Sbjct: 802  NTSGRPSGDIGQDIDKMQKAFKLPAGYTFDTQGANADMAESAGYALTAITLSIVFIYIVL 861

Query: 687  ---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
                  +      + +L L +        LF    NL ++  ++ L+G    + +++ D 
Sbjct: 862  GSQFNSFIHPAAIMASLPLSLIGVFLALFLFQSTLNLFSIIGIIMLMGLVTKNAILLIDF 921

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
            ++   K     +S  D I ++    L   + T+ A  + ++P+A+    GG      A  
Sbjct: 922  IK---KAMDQGVSRYDAILQAGKTRLRPILMTTSAMVMGMVPLALGLGEGGEQSAPMAHA 978

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  G++ +   ++ +   I  ++ D +
Sbjct: 979  VIGGVITSTLLTLVVVPVIFTYLDDLK 1005


>gi|320353440|ref|YP_004194779.1| acriflavin resistance protein [Desulfobulbus propionicus DSM 2032]
 gi|320121942|gb|ADW17488.1| acriflavin resistance protein [Desulfobulbus propionicus DSM 2032]
          Length = 1025

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/635 (12%), Positives = 181/635 (28%), Gaps = 45/635 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R     V++   I   GL+           +   P+                  +   L 
Sbjct: 10  RRPVMTVLVMCSILLFGLI-----GYRHLAVSDLPNVDFPT-----------IQVTANLP 53

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    ++  S +               +ITL F+  R  +  A  V   +
Sbjct: 54  GANPDTMASTVATVLEKEFSTIAGLDSMSSVSTTGSTQITLQFSLERDIDAAAQDVQTAI 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEK-EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
              N +L  +         T      I+    N   +    ++Q  + + QR   + +  
Sbjct: 114 SLANRRLPDNMPSPPSFRRTNPASDPILFISLNSPSLPLSLLDQYGQTMGQR---LSMIS 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q          +  + DP  ++       +++      N ++            +  
Sbjct: 171 GVAQITLRGSQKYAVRVQLDPLAMQGFDLDADEVAAAIDRQNANQPMGQLSGPHTTLTLK 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               ++                   +    VV +               D++    +   
Sbjct: 231 ASGELKKA----------------DQYRDIVVAVRGGRPIRLAEVATVIDSVENDKSGAW 274

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                +           +   +          L   L           +      A   S
Sbjct: 275 FFTPNSKAQTIVLAVEKQPGANTIEVAGAVKALLPKLSETLPASVKLAILRDGSVAITES 334

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               + T  +   LV++V+F+ +      ++   S+ ++VI T A++ LL  +L   S+ 
Sbjct: 335 ALDIQFTLLLTLVLVVLVIFLFIRNLSATVIPSLSLPMSVIGTFAVMYLLDYSLNNMSLM 394

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + L +G  VD +I+V E I       +S   +   G      TI    ++ +   + L 
Sbjct: 395 ALTLAVGFVVDDSIVVLENIVRHLEMGKSRMQAALDGAREVGFTIISMTLSLVAIFIPLL 454

Query: 479 FFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRF 531
           F GG      R F++T+G ++L+S   ++++V  +              +   +      
Sbjct: 455 FLGGIMGRLFREFSVTIGAAVLVSGVISLTLVPMLCSRYLSEQHGRGHGRLYQLTESGYQ 514

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L         +  R+  + ++   ++ +        +  G          +++ +    
Sbjct: 515 LLARWYGNSLLVVLRYRRLTMAFSLAVLAATAYLFVVVPKGFIPSEDRGFIMVSTQSSQS 574

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
           +   S +  L       Q       F+V       
Sbjct: 575 ASWISQVGHLMRLAAIVQKDPNVDRFMVNASSSSP 609



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 18/133 (13%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +    +L + +  T     L     N  ++ A+   +G+ V+D +VV + +   ++
Sbjct: 360 LSATVIPSLSLPMSVIGTFAVMYLLDYSLNNMSLMALTLAVGFVVDDSIVVLENI---VR 416

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                 S          E     +  +++     +P+   GG +      F++ +   ++
Sbjct: 417 HLEMGKSRMQAALDGAREVGFTIISMTLSLVAIFIPLLFLGGIMGRLFREFSVTIGAAVL 476

Query: 807 VAASSSIFIAAPI 819
           V+   S+ +   +
Sbjct: 477 VSGVISLTLVPML 489



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 67/161 (41%), Gaps = 9/161 (5%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +++   ++IYI +      +   L  +T L       L    LF ++ ++ A   ++ LI
Sbjct: 856  LLALSIVVIYIVLGILYESYIHPLTILTALPFAGFGALITLMLFRVDLSIYAFVGIIMLI 915

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ D     +       S  + I ++        + T+MAA ++ +P+A+  
Sbjct: 916  GLVKKNGIMMIDFA---IAAQAEGKSAVEAIHEACVIRFRPIMMTTMAALMAGIPIALGY 972

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              G        + +  G++ + S ++++     L++   R 
Sbjct: 973  GAGAESRQPLGLAVVGGLLFSQSLTLYVTPVFYLYMEKLRQ 1013


>gi|289425480|ref|ZP_06427257.1| protein-export membrane protein SecD [Propionibacterium acnes
           SK187]
 gi|289154458|gb|EFD03146.1| protein-export membrane protein SecD [Propionibacterium acnes
           SK187]
          Length = 566

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 116/535 (21%), Positives = 204/535 (38%), Gaps = 48/535 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FV 66
           L   +  I ++  L   +            P     LGLDLRGG+ + L    +D     
Sbjct: 14  LVIFLVIIIVMYVLMGVMRT--------WSP----KLGLDLRGGTSVTLTAKTEDGKAPS 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTLFLQGV 122
              L+     +   +   G+G  S++ + ++ I +S  +       E +     L  + V
Sbjct: 62  ATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQLGFRMV 121

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME--IIRQRIDQIGISEST 180
            ++  V  K            S + +        +     +           Q    +  
Sbjct: 122 YAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDASASSKGGTTSSASQYNEKDPQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                        P  +D                       S            D +   
Sbjct: 182 SAAKMVKAAEEWKPTPEDQKAFEDY------------KCAKSVDSPGDKPLVTCDRERTM 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +   V I+G  +  A +         VV++ F+ +G   F + T     K        
Sbjct: 230 KYLLSPVAITGTQVVSADSGIPQGQLSYVVNLKFNSIGTASFSDATTYLCSKMSPQNQFA 289

Query: 301 RVLTAPVINQAIPSGK-----------AQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
            VL   VI+    +G            AQISG+FT  +A  LA +L+ G+LP+  +I   
Sbjct: 290 VVLDGKVISSPQLNGNTGTSCPINGGEAQISGHFTQNSAADLANVLKYGALPLSFDISSV 349

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL- 408
            N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A + LL 
Sbjct: 350 DNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAAMVLLG 409

Query: 409 ---GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
              G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A  TI  
Sbjct: 410 EAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKARGTILM 469

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 470 ADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFW 524



 Score = 95.5 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 343 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 401

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 402 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIRE---GRTLRTALQT 458

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 459 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 518

Query: 824 YDWR 827
              R
Sbjct: 519 GRTR 522


>gi|259909512|ref|YP_002649868.1| Multidrug resistance protein [Erwinia pyrifoliae Ep1/96]
 gi|224965134|emb|CAX56666.1| Multidrug resistance protein [Erwinia pyrifoliae Ep1/96]
 gi|283479592|emb|CAY75508.1| mdtB [Erwinia pyrifoliae DSM 12163]
          Length = 1051

 Score =  152 bits (383), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/531 (11%), Positives = 148/531 (27%), Gaps = 38/531 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L   +   G+               +P+                   +    
Sbjct: 9   QRPVATILLMVAVLASGIFAYGMLSTSALPQVDYPTIQ--------------VTTLYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +        S     + ITL F+     +    +V   +  
Sbjct: 55  SPDVMASSVTAPLERQLGQMSGLSQMTSSSSSGSSVITLQFSLELSLDVAEQEVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            NS L  D              S  ++            +    +  +   ++       
Sbjct: 115 ANSLLPTDLPNPPTYKKVNPADSAAITLAASSDTQP-LTKVQDMVNTRIALRLSQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +      +    DP+ L     T   ++      N +     F  ++   +     
Sbjct: 174 RVTLAGGYQPAIRVRIDPNALAAHGLTLEDVNTLVSNSNVNGSKGGFDGQYHSVTIDAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                      ++                 I +         
Sbjct: 234 QLRSAAQ--------------------YGNLILTYQNGAALRLHDVAKIDEAAENSYQSA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +   +    ++        L+A         V          S S 
Sbjct: 274 WANSSPAIVISVQRQPGANVIAVVDAIKAQLPTLQAALPDGVKLTVLSDRTQTIRASISD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   LV++V F+ +      L+   ++ L+++ T  ++ L G +L   S+  + 
Sbjct: 334 VQFELMLSIALVVMVTFLFLRNVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  +D  I+V E I     + ++   +   G ++   TI     + +   + L F G
Sbjct: 394 IATGFVIDDAIVVVENISRRLEQGETPMEAALKGAAQIGFTIISLTFSLIAVLIPLLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
              G   R FAIT+ +SIL+SM  ++++   +  ++++    +        
Sbjct: 454 DVVGRLFREFAITLAVSILVSMVISLTLTPMLCAYLLQPVPPQRQSRFYRK 504



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 65/156 (41%), Gaps = 7/156 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+ ++++R      L     + L +  T G   L G   N  ++ A+    
Sbjct: 338 LMLSIALVVMVTFLFLR-NVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ ++D +VV + +    +      +  +   K   +     +  + +    ++P+   G
Sbjct: 397 GFVIDDAIVVVENI---SRRLEQGETPMEAALKGAAQIGFTIISLTFSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              G +   FAI +A  I+V+   S+ +   +  ++
Sbjct: 454 DVVGRLFREFAITLAVSILVSMVISLTLTPMLCAYL 489



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 88/223 (39%), Gaps = 7/223 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +   D  +  +  + + +    +   S I           R+     +  +
Sbjct: 820  NQFPAVTVSFNLNDGYSLEQAQQAIGEVSRALAQPSGITLRWQGETAAFRDATGNTLWLI 879

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + M + + I ++ +   +  ++TL       L    L   EF+L A+  V+ LIG 
Sbjct: 880  LAALLTMYVVLGILYESFIHPVTILSTLPSAAVGALLTLLLCNTEFSLIALIGVILLIGI 939

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   +        +S RD I ++        + T+MAA +  LP+ +    
Sbjct: 940  VKKNAIMMIDFALE--AENKQQLSPRDAIHQACLLRFRPILMTTMAALLGALPLMLASGS 997

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     + +  G++ +   ++F + P++   +D  A   +
Sbjct: 998  GAELRQPLGLVIVGGLIFSQVLTLF-STPVIYLWFDRLATRGK 1039


>gi|269959493|ref|ZP_06173876.1| multidrug resistance protein, putative [Vibrio harveyi 1DA3]
 gi|269835930|gb|EEZ90006.1| multidrug resistance protein, putative [Vibrio harveyi 1DA3]
          Length = 1040

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/609 (12%), Positives = 175/609 (28%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S     + IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSSSVLGTSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPAKMGALKLTATDVMGVLNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                      +                 +    +  +   
Sbjct: 233 QVSNVAELEA--------------------LVVKTGDGDVIRLGDIAKVTLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLALLPQLERNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VVKTILEAAVIVLVVITLFLGSFRAVVIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ +S   A+++   M   +        K  + +          
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSKMLKANEEPSKFEQKVHHVLDGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +               I+F+   I   F        + KG + L   A    +L  
Sbjct: 513 YEKMLTSVMAHRPVIIAFAIIVFASLPILFKFIPSELAPSEDKGVVVLMGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 IQNTMNDVN 581



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +                   E            + +     +  +  ++   +
Sbjct: 251 DVIRLGDIAKVTLEKSHDIYRASANGQEAVVAAINAAPSANPINIAADVLALLPQLERNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + +  ++ +A+ +L+ I +    +   +  I T+ L + 
Sbjct: 311 PSNIKMNVMYDSTIAINESIHEVVKTILEAAVIVLVVITLFLGSFRAVVIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +     + ++
Sbjct: 488 MLKANEEPSK 497



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     +  + ++ L +   L 
Sbjct: 830  YNHDYMGEARQFVTEGSALYATFGLALAIIFLVLAIQFESIRDPIVIMVSVPLAVCGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++        +S  D + ++    L
Sbjct: 890  ALAWGTASMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAVMEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ A    ++P+      G     S  I +  G+ +    ++F+   I  ++ + 
Sbjct: 948  RPILMTTAAMIAGLIPLMYATGAGAEQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLAEK 1007

Query: 827  RAK 829
               
Sbjct: 1008 HKP 1010


>gi|148548884|ref|YP_001268986.1| acriflavin resistance protein [Pseudomonas putida F1]
 gi|148512942|gb|ABQ79802.1| acriflavin resistance protein [Pseudomonas putida F1]
          Length = 1027

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/525 (12%), Positives = 158/525 (30%), Gaps = 47/525 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ S+I  +GL       + +  + ++P             L   S + +  +
Sbjct: 9   RRPVLALVVSSLIILMGLFA-----MGKLPIRQYP-------------LLESSTITISTE 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  S ++       S +Q ++ ITL    +R       +   
Sbjct: 51  YPGASAELMQGFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  +L       ++  +     ++       D +     E S  + R    Q    
Sbjct: 111 KVNQVRYRLPEKAYDPVVELSAGDSTAVAYVGFASDSL--SIPELSDYLSRVVEPQFSGI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +        + +    D  ++     T A ++      N          +++    
Sbjct: 169 DGVAKVQSFGGQRLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    +                      ++     G           +    A  
Sbjct: 229 QVDTDLTRVEDF--------------------RELIIRNDGTDLVRLRDIGTVELSAAAT 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +    +E    L   ++    P     +          
Sbjct: 269 QTSATMDGKPAVHLGLFPTPSGNPLVIVEGIRQLLPQIQQTLPPGVNVALAYETARFIDA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V++V+++ +   +  L+A  +I L+++    L+ + G +L L ++
Sbjct: 329 SIHEVLRTLVEAMLIVVLVIWLCLGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +     + +S   +   G       +    +T       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENVHRHIEEGKSPVAAALAGAREIAGPVIAMTLTLAAVYAPI 448

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
              G   G   R FA+T+  ++++S   A+++   M   +++  +
Sbjct: 449 GLMGGLTGTLFREFALTLAGAVIVSGIVALTLSPVMSSLLLQPGQ 493



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 93/270 (34%), Gaps = 8/270 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              +  +        ++    + +       V L  + +   S      S          
Sbjct: 222 QYVLADIQVDTDLTRVEDFRELIIRNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVH 281

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L       G+ +     +  +  +I + +P            +     I + +  ++ + 
Sbjct: 282 LGLFPTPSGNPLVIVEGIRQLLPQIQQTLPPGVNVALAYETARFIDASIHEVLRTLVEAM 341

Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           + +++ IW+        L A+  + L +    G   +FG   NL  + A++  IG  V+D
Sbjct: 342 LIVVLVIWLCLGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDD 401

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +      S          E  G  +  ++       P+ + G   G++
Sbjct: 402 AIVVVENVH---RHIEEGKSPVAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTL 458

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              FA+ +A  ++V+   ++   +P++  +
Sbjct: 459 FREFALTLAGAVIVSGIVAL-TLSPVMSSL 487



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 80/247 (32%), Gaps = 10/247 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     + +       +++       FD +    ++    PG S+             
Sbjct: 765  VRAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLTAE 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L    +   + + + + + +  +++     L  + T+ 
Sbjct: 825  LPPGFSHDWQSESRQYVQEGFAL----MWAFLAALVVIYLVLAAQYESLVDPLIILVTVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     N+     ++TLIG      +++     +       ++     I
Sbjct: 881  LSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANE--IQVRDNLDRAAAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + T+ A    VLP+      G +      + +  G++V    ++F+   
Sbjct: 939  IRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPT 998

Query: 819  ILLFIYD 825
            I  ++  
Sbjct: 999  IYAWLAR 1005


>gi|50842642|ref|YP_055869.1| preprotein translocase subunit SecD [Propionibacterium acnes
           KPA171202]
 gi|50840244|gb|AAT82911.1| translocase subunit SecD [Propionibacterium acnes KPA171202]
 gi|332675565|gb|AEE72381.1| protein-export membrane protein SecD [Propionibacterium acnes 266]
          Length = 566

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 116/535 (21%), Positives = 204/535 (38%), Gaps = 48/535 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FV 66
           L   +  I ++  L   +            P     LGLDLRGG+ + L    +D     
Sbjct: 14  LVIFLVIIIVMYVLMGVMRT--------WSP----KLGLDLRGGTSVTLTAKTEDGKAPS 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTLFLQGV 122
              L+     +   +   G+G  S++ + ++ I +S  +       E +     L  + V
Sbjct: 62  ATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQLGFRMV 121

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME--IIRQRIDQIGISEST 180
            ++  V  K            S + +        +     +           Q    +  
Sbjct: 122 YAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDASASSKGGTTSSASQYNEKDPQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                        P  +D                       S            D +   
Sbjct: 182 SAAKMVKAAEEWKPTPEDQKAFEDY------------KCAKSVDSPGDKPLVTCDRERTM 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +   V I+G  +  A +         VV++ F+ +G   F + T     K        
Sbjct: 230 KYLLSPVAITGTQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSPQNQFA 289

Query: 301 RVLTAPVINQAIPSGK-----------AQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
            VL   VI+    +G            AQISG+FT  +A  LA +L+ G+LP+  +I   
Sbjct: 290 VVLDGKVISSPQLNGNTGTSCPINGGEAQISGHFTQNSAADLANVLKYGALPLSFDISSV 349

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL- 408
            N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A + LL 
Sbjct: 350 DNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAAMVLLG 409

Query: 409 ---GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
              G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A  TI  
Sbjct: 410 EAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKARGTILM 469

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 470 ADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFW 524



 Score = 95.5 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 343 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 401

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 402 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIRE---GRTLRTALQT 458

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 459 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 518

Query: 824 YDWR 827
              R
Sbjct: 519 GRTR 522


>gi|116747899|ref|YP_844586.1| acriflavin resistance protein [Syntrophobacter fumaroxidans MPOB]
 gi|116696963|gb|ABK16151.1| acriflavin resistance protein [Syntrophobacter fumaroxidans MPOB]
          Length = 1055

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/583 (11%), Positives = 157/583 (26%), Gaps = 36/583 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   I   GL+           +   P+                    L   
Sbjct: 9   RRPVATTLVMLAILLFGLM-----GYRSLPVSELPNVDYPTIE---------VSSNLPGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +               +ITL F+  R  +  A  V   +  
Sbjct: 55  NPETMAASVATPLEREFSTIAGLDSMTSVNALGITRITLQFSLDRDIDAAAQDVQTAIAK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               L  +                I+        +    ++           +I +    
Sbjct: 115 SQRLLPPELPTPPWFRKVNPADQPILYLALASPILPLSTVD--EYAQTLVAQRISMLGGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q L        +  + +P+ L  L     ++       N +        +    +    
Sbjct: 173 AQVLVFGSQKYAVRVQVNPNALTSLGIGIDEVEQAIAKSNVNLPTGTLYGQNRAFTVQAT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + +                       +V          +      D +          
Sbjct: 233 GQLVNAA----------------SYKPVIVAYRNGSPVRLQDLGKVIDGVENDKVAGWFN 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +     +    L  M R          +      +   S  
Sbjct: 277 SGGNTSRAIILAIQRQPGTNTVQVADRIKGLLPMFRMQIPESVKLDILYDRSESISHSIE 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +   LV++V+F+ +      ++   ++ L+++ T A++ +LG +L   S+  +
Sbjct: 337 DVKFTLYLSMCLVVLVIFLFLRNVSATIIPSLALPLSIVGTFAVMYMLGYSLDNLSLMAL 396

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I++ E I       +S   +   G      TI    ++     + L F 
Sbjct: 397 TLSVGFVVDDAIVMLENIVRHLEMGKSKLQAALDGSREIGFTILSMTLSLAAVFIPLLFM 456

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G     FA+T+G +IL+S   ++++   +    ++    +       +        
Sbjct: 457 GGILGRLFHEFAVTIGAAILVSGVVSLTLSPMLCSRFLKAPGAERHGAFYNTAERFFQGM 516

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +       +      + +  + ++ L+ T  L + I       
Sbjct: 517 LGAYDWSLKLVLRHKASMMLLSAVLLIATGYLFWAIPKDFIPS 559



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 8/236 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-TRVLEMVKKKITEIVP 647
            DL  V   +E+ ++        +  +  ++ +Q QPG +  Q    ++ +       +P
Sbjct: 257 QDLGKVIDGVENDKVAGWFNSGGNTSRAIILAIQRQPGTNTVQVADRIKGLLPMFRMQIP 316

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
            S   +      +     I      + +S   +++ I++  +     +     L L I  
Sbjct: 317 ESVKLDILYDRSESISHSIEDVKFTLYLSMCLVVLVIFLFLRNVSATIIPSLALPLSIVG 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T     + G   +  ++ A+   +G+ V+D +V+ + +   ++      S          
Sbjct: 377 TFAVMYMLGYSLDNLSLMALTLSVGFVVDDAIVMLENI---VRHLEMGKSKLQAALDGSR 433

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           E     +  +++     +P+   G   G +   FA+ +   I+V+   S+ ++  +
Sbjct: 434 EIGFTILSMTLSLAAVFIPLLFMGGILGRLFHEFAVTIGAAILVSGVVSLTLSPML 489



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 96/249 (38%), Gaps = 10/249 (4%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V    V    +++    ++             L+       A  ++ + V++        
Sbjct: 785  VPTEAVAKIRQNVGPMTVNHTGQFASVTVSFNLKPGVALGDAVDQIEKAVRELRLPATLS 844

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
            S+ Q T     +  + +     V +I++ + + + + I ++ +   +  ++ L       
Sbjct: 845  SSFQGTAQQFQQSMKGM----WVLLIVAIMVIYMVLGILYESFIHPVTILSGLPSAGVGA 900

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    +F ++ ++ A   ++ L+G    + +++ D      + Y    S  + I +    
Sbjct: 901  LLTLMIFRVDLSIYAFVGIIMLVGIVKKNAIMMIDFALSAQREYGK--SPAEAIYEGCIL 958

Query: 768  TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 + T+MAA +  LP+A+    G        + +  G+V++   +++I   + L++ 
Sbjct: 959  RFRPIMMTTMAALMGTLPIALGIGAGAEARQPLGLAVVGGLVLSQLLTLYITPVVYLYME 1018

Query: 825  DWRAKNARI 833
             ++    R+
Sbjct: 1019 SFQEMLRRV 1027


>gi|113954083|ref|YP_731696.1| RND multidrug efflux transporter [Synechococcus sp. CC9311]
 gi|113881434|gb|ABI46392.1| RND multidrug efflux transporter all3143 [Synechococcus sp. CC9311]
          Length = 1136

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/529 (13%), Positives = 146/529 (27%), Gaps = 41/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +   +I  +GL+       P   ++  P   P               + ++   
Sbjct: 10  RPVLSTVCSLLIVIVGLIAI-----PILPIENLPDIAPPT-------------VKVQATY 51

Query: 63  DDFVNGFLQM-YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++   +  L   +        I   S     + +++SF            V  
Sbjct: 52  VGADAVSVEQGVTTVLEQQINGVENMDFITSNSSSDGVSSVSVSFNSGTDGNINQVNVQN 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQI 174
            +     +L  + +K  +         +++                  S  + +   D I
Sbjct: 112 RVSLAEPQLPEEVRKAGVTVNKASNSILLVYNFVNSDPSKTEYSVETISGYLDKNLTDNI 171

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +        +      DP +L     T+A +       N        G     
Sbjct: 172 KRVPGVGEVTYFGNRKVAFRLWLDPEKLAANGLTSADVVQQLQSQNRLVPAGKIGGSPAP 231

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           +     + V+ +  ++                   + +   + G     +          
Sbjct: 232 EGQQYTFTVQLQGRLTTESEFEN------------IVLKTTDTGGLIKLKDVGRVSLGGE 279

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
              +D   L             +  +          +               V       
Sbjct: 280 TYGIDAMDLKGTPSVGVAVYQLSGSNAIQVSNGVKEVIEQFEQTLPVGLDTQVIYDTTDF 339

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S      +      LV+++LF+ +   K  LV   +I + +I T AL+   G +L  
Sbjct: 340 INQSIKGVTNSLRDAVILVVLILFLFLQNWKATLVPAIAIPVALIGTFALVLAFGFSLNQ 399

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIA 473
            ++ G+VL  GL VD  I V E    +  +  +   +        +S  I  S +   + 
Sbjct: 400 LTLFGLVLATGLVVDDAITVVEDTSAKKAEGMTSVQAAMATMDELFSAVIATSLVKMAVF 459

Query: 474 TVVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             VLFF G  G   + FA T+  SI IS F A++    +   ++     
Sbjct: 460 LPVLFFPGATGTIYKQFAATILFSIGISTFNALTFSPMLAALLLSKDTK 508



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 6/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T      FG   N   +  ++   G  V+D + V +       
Sbjct: 369 WKATLVPAIAIPVALIGTFALVLAFGFSLNQLTLFGLVLATGLVVDDAITVVE---DTSA 425

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
                ++       +++E     + TS+      LP+  + G    I   FA  + F I 
Sbjct: 426 KKAEGMTSVQAAMATMDELFSAVIATSLVKMAVFLPVLFFPGATGTIYKQFAATILFSIG 485

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++  +++  +  +   +     K 
Sbjct: 486 ISTFNALTFSPMLAALLLSKDTKQ 509



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 82/216 (37%), Gaps = 10/216 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            +F +    +   + A  +        +  I   + +Q        ISRE ++ G + V+I
Sbjct: 907  HFNLYRSIKIDGTPAVGKSSGQAITAMKTIFKDANLQGLGFDWTGISREEVKAGSLAVVI 966

Query: 676  ---SAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
                 +A+ + +  +++ Y   +  + T+   +   L F    G   N+ A   ++ LIG
Sbjct: 967  FALGILAVFLVLSAQYESYSDPIIILLTVPTALLGALVFLGAAGQVLNIYAQVGLVMLIG 1026

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++ D      +      S  +    +    L   + T++++    LP+ +   
Sbjct: 1027 LAGGNAILIVD---LANQKMGEGTSALEAARFAAQSRLRPILMTAISSLTGFLPLMLASG 1083

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G     S  + +  G++VA   S  +     + + 
Sbjct: 1084 AGAQSQSSLGLVVFGGLLVATFLSTLVVPVFYVVMK 1119


>gi|297171591|gb|ADI22588.1| cation/multidrug efflux pump [uncultured Rhizobium sp.
           HF0500_10F10]
          Length = 699

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/518 (13%), Positives = 157/518 (30%), Gaps = 40/518 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ ++  +G+     +      + RFP+                  +     
Sbjct: 11  RNPVPPILLFFVLVALGI-----SSFINLPITRFPNIDVPVV---------AVTITESGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++    +     F      +   + V   +  
Sbjct: 57  APSELETQVTKKVEDAIAGISGVKHVTSTITDGSSVTAAEFRLEIDTDRATNDVKDAVAK 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L +   + ++     +  SIV              + S  +    I  +       
Sbjct: 117 IRSDLPLTIDEPVIQRIEVENQSIVTYAAASPGKTPE--QLSWFVDDVVIRALQGLNGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++    DP RL  L  T  +++                         N  
Sbjct: 175 RVERMGGVEREIQVRLDPDRLAALGVTAGEVNRQLRST-------------------NVD 215

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   + E  G      T +             +   G +       + +          R
Sbjct: 216 LSGGRGEFGGQEQAIRTLSSADTVQGLAETRIYLRGGRQVLLAELGEVVDNWEKPRSFAR 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +   PV+  A    +++ + + T+      A    A + P       + +V    G+   
Sbjct: 276 LDGRPVV--AFSIYRSKGASDTTVADRAAEAVAKLAAANPDVTFSKIDDSVTYTYGNFES 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A  A L +IV+ + +   +   VA  ++ L  I T   + L+G +L L S+  I 
Sbjct: 334 AMETLAEGALLAVIVVLLFLRDWRATAVAAITLPLAAIPTFWAMDLMGFSLNLVSLLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I       +  + +           +    +T +     + F G
Sbjct: 394 LVTGILVDDAIVEIENIERHIGMGKKPYRAAMEAADEIGLAVIAITMTIIAVFSPVSFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
              G   + F +T+ +++  S+  A  I   +  +   
Sbjct: 454 GIAGQYFKQFGLTVAVAVFFSLLVARLITPMLAAYFFH 491



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 74/249 (29%), Gaps = 6/249 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             ++ +   R V L+ +   +++ +      +            + +             
Sbjct: 244 ETRIYLRGGRQVLLAELGEVVDNWEKPRSFARLDGRPVVAFSIYRSKGASDTTVADRAAE 303

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K+    P  T    +                    + +A+++ +     W     A 
Sbjct: 304 AVAKLAAANPDVTFSKIDDSVTYTYGNFESAMETLAEGALLAVIVVLLFLRDWRATAVAA 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            TL L    T     L G   NL ++ A+  + G  V+D +V  + +     +      +
Sbjct: 364 ITLPLAAIPTFWAMDLMGFSLNLVSLLAITLVTGILVDDAIVEIENI--ERHIGMGKKPY 421

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
           R  ++ +    L     T M       P++  GG        F + +A  +  +   +  
Sbjct: 422 RAAMEAADEIGLAVIAIT-MTIIAVFSPVSFMGGIAGQYFKQFGLTVAVAVFFSLLVARL 480

Query: 815 IAAPILLFI 823
           I   +  + 
Sbjct: 481 ITPMLAAYF 489


>gi|302186199|ref|ZP_07262872.1| acriflavin resistance protein [Pseudomonas syringae pv. syringae
           642]
          Length = 1035

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/589 (11%), Positives = 167/589 (28%), Gaps = 44/589 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I  +G +           +   P+      +             L   
Sbjct: 9   RRPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q   +I L F  +R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSLGSIAGINTMTSNSSQGTTRIILQFDLNRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q   +   +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAITSTNVRRPKGFVEDDQHNWQVQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 +   +    +  
Sbjct: 234 QLETAED--------------------YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         LRA         +          +   
Sbjct: 274 FYNNDRAVLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRFF 532
           G      R F+IT+ +SI++S+  ++++   +    ++ ++       +        R  
Sbjct: 454 GLVESLFREFSITLSVSIIVSLIVSLTLTPMLCARWLKPREAHGENAFQRWSERVNDRMV 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              D      MR R   +   ++  + +I L       +      G  +
Sbjct: 514 AGYDRSLGWVMRHRRLTLLSLLVTVVVNIALYVVVPKTFLPQQDTGQLM 562



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           +V+   S+ +   +       R  + 
Sbjct: 472 IVSLIVSLTLTPMLCARWLKPREAHG 497



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 98/262 (37%), Gaps = 9/262 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  QDPVTLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   S I +             +     ++ + +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLEREQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++ ++ I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    + L++   R +  +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHRYNK 1021


>gi|256840201|ref|ZP_05545709.1| AcrB/AcrD family multidrug resistance protein [Parabacteroides sp.
           D13]
 gi|298377463|ref|ZP_06987415.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_19]
 gi|301311295|ref|ZP_07217223.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           20_3]
 gi|256737473|gb|EEU50799.1| AcrB/AcrD family multidrug resistance protein [Parabacteroides sp.
           D13]
 gi|298265482|gb|EFI07143.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_19]
 gi|300830869|gb|EFK61511.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           20_3]
          Length = 1073

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 72/574 (12%), Positives = 161/574 (28%), Gaps = 49/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G L  +        + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGFLGLI-----SLPVTQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     N    I++ F      +  A  V  
Sbjct: 51  TGANAQTVLNSVIAPLEDQINGVENMMYMSSNASNNGSADISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  + T   +   +++     +     +           I ++   
Sbjct: 111 RVSMAQGLLPAEVTQIGVTTQKRQNSMLLVFSVYAEDDRYDSEFLENYAKINLIPEVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q   + + ++      N       FG +    + 
Sbjct: 171 PGVGDANVLGT-DYSMRIWLKPDVMAQYKLSPSDVTVALSEQNVEAAPGSFGEQ---GNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              + ++    +                +I       
Sbjct: 227 SFQYTIRYKGRL-------------QEANEFEQIVVKALPDGEVLRLKDIADIELGRLTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I       +   TI     L    +    P     +          
Sbjct: 274 NFINRVNGHDAVTCIVYQMPGTNATETISNIETLLEETQLTMPPGMKVNISMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G ++ L ++
Sbjct: 334 SIHEVIKTLLEAFVLVFIVVYVFLQDLRSTLIPAIAIPVALIGTFFMLSLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   + 
Sbjct: 394 CAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSAKLASIDAMSELGGAIVSITLVMMSVFIP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPL 528
           + F G   G   R F +TM ++I +S   A+++  A+           +K+ K+  I+  
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGLSALNALTLSPALCAIFLKPHDEEHKEKKTTFISRF 513

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
              F       +   + +          S   + 
Sbjct: 514 HTSFNAAYDSLLAKYKKQVVFFIQKKWLSFGIVA 547



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 87/311 (27%), Gaps = 28/311 (9%)

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                      +         ++     +   + +    + V +   +        ++ + 
Sbjct: 750  QGYYGGLYASNFNRFGKMYRVMVQADPDLRKNMESMKNIKVKSGNDMAPISQFITMKKVY 809

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
              DI  +        ++        S    + ++ V K              E+ G    
Sbjct: 810  GPDIISRFNMYTAIKVMVAPADGYTSGQALKAIDEVAKTTLPAGFDY-----ELGGMARE 864

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALFG 715
                      +I     + +Y+ +      +   L  + +    L+       G+ AL  
Sbjct: 865  EASTSGSTTALIFLLCFVFVYLLLSAQYESYILPLSVLLSVPFGLMGSFLFVQGWAALGN 924

Query: 716  IEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            I      V           A++ L+G    + +++ +   +  ++    +S         
Sbjct: 925  IPALKMIVGTMSNNIYMQIALIMLVGLLAKNAILIVEFALERRRM---GMSITWAAVLGA 981

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS+A  + +LPM   +G       +       G+ +     IFI   + + 
Sbjct: 982  AARLRPILMTSLAMVVGLLPMMFAFGVGAHGNRTLGTAAIGGMFIGMIFQIFIVPVLFVV 1041

Query: 823  IYDWRAKNARI 833
                + K   I
Sbjct: 1042 FQYLQEKFKPI 1052



 Score = 44.7 bits (103), Expect = 0.063,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 85/239 (35%), Gaps = 10/239 (4%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          +   +    +    +  Q    ++      +E + ++    +P     
Sbjct: 262 DIADIELGRLTYNFINRVNGHDAVTCIVYQMPGTNATETISNIETLLEETQLTMPPGMKV 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + I  ++ + + + I +++        L     + + +  T    
Sbjct: 322 NISMNANDFLFASIHEVIKTLLEAFVLVFIVVYVFLQDLRSTLIPAIAIPVALIGTFFML 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +     S     +   +++E  G 
Sbjct: 382 SLIGFSINLLTLCAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSAKLASI--DAMSELGGA 439

Query: 772 SVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  S+   +    +P++  GG+       F + MA  I ++A +++ ++  +      
Sbjct: 440 IV--SITLVMMSVFIPVSFMGGTAGTFYRQFGLTMAIAIGLSALNALTLSPALCAIFLK 496


>gi|186476531|ref|YP_001858001.1| acriflavin resistance protein [Burkholderia phymatum STM815]
 gi|184192990|gb|ACC70955.1| acriflavin resistance protein [Burkholderia phymatum STM815]
          Length = 1103

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/584 (12%), Positives = 161/584 (27%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I   GL         +  +   P                     L   
Sbjct: 9   QRPVATTLLAIGIALSGLFA-----FARLPVAPLPQVDFPTI---------SIQASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +     +        S      +IT+ F  +R  +  A  V   +  
Sbjct: 55  SPETVATSVASPLERHLGTIADVTEMTSSSSVGSARITMQFGLNRNIDGAARDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    + N          + +L    +      A +            +   +   
Sbjct: 115 ARADLPASLRSNPTYHKVNPADAPILI-LALTSKTMTAGQLYDSAATVLQQSLSQVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S      +  E +P  L         +       N +           R       
Sbjct: 174 EVDVSGSANPAVRVELEPQALFHYGIGLEDVRAALASANANSPKGSIEFGPNRVQLYTND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +                      D+                 +   +  + +  
Sbjct: 234 QAKKASQ--------------------YKDLVIAYRDGAAVRLSDVAEVVDSVEDLRNLG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++        I   +   +   TI+    +   L+A                    S   
Sbjct: 274 LMNNERSVLVILYRQPGANIIETIDRVKAMIPQLKASLPAAVEVTPTADRSTTIRASLKD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +   +  L+   ++ +++I T A + LLG ++   S+  + 
Sbjct: 334 TQYTLMMAVALVVMVVFLFLRNWRATLIPSVAVPISIIGTFAAMYLLGFSIDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I            +  +G      T+   +I+ +   + +   G
Sbjct: 394 IATGFVVDDAIVVLENIERHIESGMPRMKAAFVGAREVGFTVMSISISLVAVFLPILLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ L+I +S+  ++++   M   ++     K  +           + +
Sbjct: 454 GIVGRLFREFALTLSLAIGMSLIVSLTLTPMMCSRLLFEPHEKKEEGRFARWLERGFNWM 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              + R   W +   +L     +  +  +   Y +  KG     
Sbjct: 514 QRGYARTLGWSLRHPLLILTVLLLTIALNIWLYIVVPKGFFPQQ 557



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   L     + + I  T     L G   +  ++ A+    G+ V+D +VV + +
Sbjct: 351 LFLRNWRATLIPSVAVPISIIGTFAAMYLLGFSIDNLSLMALTIATGFVVDDAIVVLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +   + +           E     +  S++     LP+ + GG V      FA+ +
Sbjct: 411 ---ERHIESGMPRMKAAFVGAREVGFTVMSISISLVAVFLPILLMGGIVGRLFREFALTL 467

Query: 802 AFGIVVAASSSIFIAA 817
           +  I ++   S+ +  
Sbjct: 468 SLAIGMSLIVSLTLTP 483



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 97/238 (40%), Gaps = 7/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S   G          +     + +      + +   +++ + + EI    TI  + 
Sbjct: 852  SAIASFGPGTTPLAVNHQSQFVASTISFNLPPGKSLSDATQIIYQTMAEIGMPGTIHGSF 911

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++ +    + ++ +  A+ I + + ++ +   L  ++TL       L    LF
Sbjct: 912  QGTAQAFQQSMSDQPILILAALAAVYIVLGMLYESYIHPLTILSTLPSAGVGALLALLLF 971

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              EF++ A+ AV+ LIG    + +++ D     +      +S RD I+++        + 
Sbjct: 972  NTEFSIIALIAVILLIGIVKKNAIMMVDFA---IDASRKGLSSRDAIEQACLLRFRPIMM 1028

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+ AA +  LP+A     G  +     + +  G++V+   +++    + L++   R +
Sbjct: 1029 TTCAALLGALPLAFGRGEGAELRAPLGLAIVGGLIVSQMLTLYTTPVVYLYMDRIRVR 1086


>gi|15802557|ref|NP_288584.1| multidrug efflux system subunit MdtC [Escherichia coli O157:H7
           EDL933]
 gi|12516282|gb|AAG57139.1|AE005434_3 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 1025

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFXRDINXAARDVXAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGMVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|238792114|ref|ZP_04635750.1| Multidrug resistance protein mdtC [Yersinia intermedia ATCC 29909]
 gi|238728745|gb|EEQ20263.1| Multidrug resistance protein mdtC [Yersinia intermedia ATCC 29909]
          Length = 1013

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 71/603 (11%), Positives = 169/603 (28%), Gaps = 44/603 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             +L   I   G++      +       +P                     +   + + +
Sbjct: 3   TTLLTMAITLSGIIGFSLLPVSPLPQVDYPVIS--------------VSASMPGADPETM 48

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    +     +        +      +I L F  +R     A  V   L    S L
Sbjct: 49  ASSIATPLERALGRIAGVNEMTSTSSLGSTRIILQFDLNRDINGAARDVQAALNAAQSLL 108

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                            + ++    +        +       +   +I  +E        
Sbjct: 109 PTGMPNRPTYRKMNPSDAPIMI-MTLTSDTFTQGQLYDFASTKLAQKIAQTEGVSDVSVG 167

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
              L  +  E +P  L     +   +       N  +                       
Sbjct: 168 GSSLPAVRVELNPGALFNQGVSLDAVRQAISTANVRRPQG-------------------- 207

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
              S        AN + KT +    +                 +   +  V +  +    
Sbjct: 208 AIDSSQQHWQVQANDEIKTAEGYRPLVIHYNNGSAVRLQDVATVVDSVQDVRNAGMSDGK 267

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                + S +   +   T++        LRA         + +        S    + + 
Sbjct: 268 PAVLLVISREPGANIIATVDRIRAELPALRASIPASIQLNIAQDRSPTIRASLDEVERSL 327

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            I   LV++V+F+ +  G+  L+   ++ +++I T   + L G +L   S+  + +  G 
Sbjct: 328 MIAVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGF 387

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA-- 484
            VD  I+V E I            +   G      T+   +I+ +   + L    G    
Sbjct: 388 VVDDAIVVLENISRHLEAGVKPMAAALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGR 447

Query: 485 -VRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFLIPDC 537
             R FA+T+ ++I IS+  ++++   M   +       +  +++      L+        
Sbjct: 448 LFREFAVTLSVAIGISLVISLTLTPMMCAHLLRSHPVGQQPRIRGFGKILLAIQQGYGRS 507

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +       R+  V +    ++     +      +     G +   + A++ +    ++  
Sbjct: 508 LNWVLGHTRWVMVVLLSTIALNVWLYISIPKTFFPEQDTGRMMGFIQADQSISFQSMQQK 567

Query: 598 LES 600
           L+ 
Sbjct: 568 LKD 570



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 86/242 (35%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V L  V + ++S+Q    +  +       LV  +    + +A    +    
Sbjct: 234 VIHYNNGSAVRLQDVATVVDSVQDVRNAGMSDGKPAVLLVISREPGANIIATVDRIRAEL 293

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAIT 698
             +   +P S   N         R  + +    ++I+   +++ +++  +     L    
Sbjct: 294 PALRASIPASIQLNIAQDRSPTIRASLDEVERSLMIAVALVILVVFLFLRSGRATLIPAV 353

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +   
Sbjct: 354 AVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPM 410

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFI 815
               + + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ +
Sbjct: 411 AAALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVISLTL 470

Query: 816 AA 817
             
Sbjct: 471 TP 472



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 95/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   ++ + +     V++ +TE+   ++++ T     ++ +E ++  +  ++ +   
Sbjct: 792  TISFNLPEAGSLSAATAAVERAMTELGVPASVRGTFTGTAQVFQETLKSQLWLIMAAIAT 851

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 852  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 911

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     +S RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 912  MMVDFALDAQRNGN--LSARDAIFQASLLRFRPILMTTLAALFGALPLVLGSGDGAELRQ 969

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + L+    R + ++
Sbjct: 970  PLGITIVGGLVMSQLLTLYTTPVVYLYFDRLRNRFSK 1006


>gi|226310367|ref|YP_002770261.1| efflux system [Brevibacillus brevis NBRC 100599]
 gi|226093315|dbj|BAH41757.1| putative efflux system [Brevibacillus brevis NBRC 100599]
          Length = 1043

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/704 (10%), Positives = 190/704 (26%), Gaps = 59/704 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++   I   GL+       P+  ++  PS      +             +E  
Sbjct: 9   KRPVTMIMISIAIFIFGLVT-----FPRLAIELMPSLNAPVAV---------VVTSVEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +     +        +     + + L F      +     +   +  
Sbjct: 55  APAEVEKLVTKPIENALGTVPNLDKVTSTSVNGSSSVILHFKWGTDMDQATLNMRDKVDL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L        ++        I+      DQ ++   + + ++I+ R   +       
Sbjct: 115 VRGSLPESAGSPRVLKFDPTSQPILDLAVTGDQDVNKLKKIADDVIKAR---LERINGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +    DP++L     T  ++       N S           + S   Q 
Sbjct: 172 SVTVTGGQERIVDIIVDPAKLAAYGLTLDQIKAALENSNISGSAGAIREGDAKTSIRVQG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  T+   + ++   +G          N+   +  V +  
Sbjct: 232 ---------------------EFTNVDTIALTPISVGGSFIRLSDIANVTDTIKEVTNLS 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +     +        + +         +          S   
Sbjct: 271 YIDGKPSLGISVMKGTGGNTIKIAKDVKAELEKINSTLPANVETSIVLDTSTYIQSSVDN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     + +++LF  +      L+A   + +++I T  L+ + G T+ L S+AG+ 
Sbjct: 331 TVVHALAGGAIGVLMLFFFLGSLSSMLIAVIVLPVSIISTFLLMYMTGQTINLISLAGLT 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LG+G  VD  +++ E I  +  + + +  +  +G     + +  S +  +   + +    
Sbjct: 391 LGLGSLVDFAVVMLENIFRQREQGKGMMEAALVGSKEVGTAVMASALAQICVFLPIALTE 450

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G         A+T+  S + ++     +V  M   +++     +   N      L    I
Sbjct: 451 GIVAELFAPLALTVVFSHIAALVFTFLLVPMMSARLLKTVPEHTKHENYRGFNPLTWFNI 510

Query: 539 AIQFM-------------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
               +               +        +     + +       +    +G IQ+ +  
Sbjct: 511 GFHKVEKGYQRVLKWALGHRKTVIGSAFAMLIGSLMLVPTLGAGFFPDMDQGVIQVEIKL 570

Query: 586 NRPVDLSVVRSNLESLQI-----GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   L+     ++ ++       +             +          A   +      
Sbjct: 571 PKGTVLTETEKVMKQVEEVVNQVPEKKLVKSSVGGGDGISESGASTSHNATIELHVGEIT 630

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                     +   E V      ++  K + G +    A+ I I
Sbjct: 631 TRQRSTEAIAVGLQEQVKHIAGADIKVKSLSGGMGGGAAISIEI 674



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 91/253 (35%), Gaps = 8/253 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +  + P    +  +++ ++   ++            V +         Q    E+     
Sbjct: 775  LRISTPTGAQISLTSVATISKVEVPPSIERKNMTREVTVTSDLIGDNLQAAATEVTNIIN 834

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
               VP             +    +  G+  +I+S + + + +  +F+  F     + ++ 
Sbjct: 835  KLNVPDGYTIEMGGQSEDMGNSFVNLGL-AIILSVVLVYMVMAAQFESLFSPFIIMFSVP 893

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              +T  +      G    ++ +   + LIG  VN+ +V+ D +    +L        + I
Sbjct: 894  PSLTGVILGLLFTGTPITVSVLIGYILLIGLVVNNAIVLIDLIN---QLRAKGWELHEAI 950

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAP 818
              +    L   + T++   +++ P++V  GS +      A  + +G++ +   ++ +   
Sbjct: 951  LHAGPARLRPILMTTLTTIMAIAPLSVAAGSGLELQAPMATTVMYGLIFSTMITLILVPV 1010

Query: 819  ILLFIYDWRAKNA 831
            + ++  +   K  
Sbjct: 1011 VTVWFDEMGQKRR 1023



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 70/207 (33%), Gaps = 4/207 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                      V   ++K  + +               I   +    +  +   AI +L+
Sbjct: 286 TGGNTIKIAKDVKAELEKINSTLPANVETSIVLDTSTYIQSSVDNTVVHALAGGAIGVLM 345

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
             +        L A+  L + I  T     + G   NL ++A +   +G  V+  VV+ +
Sbjct: 346 LFFFLGSLSSMLIAVIVLPVSIISTFLLMYMTGQTINLISLAGLTLGLGSLVDFAVVMLE 405

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
            +    +         +       E     + +++A     LP+A+  G V   FA P+A
Sbjct: 406 NI---FRQREQGKGMMEAALVGSKEVGTAVMASALAQICVFLPIALTEGIVAELFA-PLA 461

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829
             +V +  +++     ++  +     K
Sbjct: 462 LTVVFSHIAALVFTFLLVPMMSARLLK 488


>gi|88807923|ref|ZP_01123434.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 7805]
 gi|88787962|gb|EAR19118.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 7805]
          Length = 1045

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 68/584 (11%), Positives = 157/584 (26%), Gaps = 30/584 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   + V+   ++   G +  +        L+  P   P                    
Sbjct: 9   LRRPVFTVVCSLLVLLAGSVALV-----GLGLEDLPQLAPTRV---------SVSASFPA 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++  + L+       S RQ    ++L F      E  A KV   + 
Sbjct: 55  ASPEVVEQSVTAVLEKQLNGLEGLESMTSSSRQGGASLSLRFESG-DPELNAIKVQNEVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + +L     +  L      +  +++   +    +   I     + +   + +  +   
Sbjct: 114 LASRRLPQAVTRQGLNVNRSTDDLLLILGFSAPPGLYEPIFIGGWLDQNLQEALKATPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                     +      DP+RL     +T  ++      N        G           
Sbjct: 174 GDIRVFGSSELAFRLWLDPNRLELFNLSTNDITAALAEQNVLAAVGSLGAAPAPAGQLFS 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++ +  +       A              +   E G     +          A     
Sbjct: 234 LPIDAEGRLRNQADFEAM------------VVKRTEAGGLVRLKDVGRVELGQRAYGSST 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +              L     P     V          +  
Sbjct: 282 LNLEGNSSVAVGIFQRDGANALQVSRAVMDELTRLERSFPPGLTMQVIVDVAETVQANLD 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LVL+VL + +   +  L+   ++ + +I +L ++ L G+ L    + G+
Sbjct: 342 RTTATLRDAVVLVLVVLVLFLGRWRLALIPGIAVPVALIGSLIVVRLSGSNLNSLILFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  G+ VD  I+V+E I     +      + +   +     +  +++      + +   
Sbjct: 402 VLATGIVVDDAIVVSEDIAGRIEEGAEPQGAAEDAMAELAGAVVATSLVLAAVFLPVLLI 461

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      +  A+ +  +IL S F A++         +     +           L    
Sbjct: 462 PGSIGRLYQPIALAISGAILFSTFNALTFTPMACARALGSGSGRLPAPIKRISQMLRHGM 521

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +Q    +   + +     +  + L        G+       +
Sbjct: 522 HRLQSWYGKALALWLPRGRIVLGLILTGLMLTGIGLATIPTSFI 565



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 69/164 (42%), Gaps = 9/164 (5%)

Query: 670  IVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  V+ +    ++Y+ +      +   L  + T+ + +   L    L G+  ++ A   +
Sbjct: 874  VTWVLFALGLSVVYLLLAGLYESFLDPLIILLTVPMALLGALIGLKLRGLTLDVYAQMGL 933

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            L L+  +  + +++ +      +     I+  + I+++    +   + T++ +    LP+
Sbjct: 934  LVLVSLAAKNGILIVEFAN---QRLEQGIALLEAIEEAAINRMRPILLTAVTSLAGFLPL 990

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +    G +   S    +  G++V+   S+F+   I L +  WR
Sbjct: 991  LLASGSGSASRISIGTVVFSGLLVSTLLSLFVIPAIYLQLKRWR 1034



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
              +W  AL     + + +  +L    L G   N   +  ++   G  V+D +VV + + 
Sbjct: 361 FLGRWRLALIPGIAVPVALIGSLIVVRLSGSNLNSLILFGLVLATGIVVDDAIVVSEDI- 419

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
                       +   + ++ E  G  V TS+      LP+ +  GS+       A+ ++
Sbjct: 420 --AGRIEEGAEPQGAAEDAMAELAGAVVATSLVLAAVFLPVLLIPGSIGRLYQPIALAIS 477

Query: 803 FGIVVAASSSIFIAA 817
             I+ +  +++    
Sbjct: 478 GAILFSTFNALTFTP 492


>gi|318606701|emb|CBY28199.1| multidrug transporter MdtC [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 1024

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/584 (12%), Positives = 164/584 (28%), Gaps = 39/584 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +             +     + +   +    +     +    
Sbjct: 28  GFSLLPVSPLPQVDYPVIM---------VSASMPGAAPETMASSIATPLERALGRIAGVN 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +      +I L F  SR     A  V   L    S L                 + 
Sbjct: 79  EMTSTSSLGSTRIILQFDLSRDINGAARDVQAALNAAQSLLPSGMPNRPTYRKMNPSDAP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++    +        +       Q   +I  +E           L  +  E +PS L   
Sbjct: 139 IMI-MTLTSDTFSQGQLYDFASTQLAQKIAQTEGVSDVSVGGSSLPAVRVELNPSALFNQ 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +       N  +                          S        AN + KT
Sbjct: 198 GVSLDAVRQAISAANVRRPQGS--------------------IDSSEQHWQVQANDEIKT 237

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                NI   +  V +  +         + S +   +   T+
Sbjct: 238 AEGYRPLIIHYNNGSPVRLQDVANIVDSVQDVRNAGMSDGKPAVLLVISREPGANIIATV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        LRA         + +        S    + +  I   LV++V+F+ +  G+
Sbjct: 298 DRIRAELPALRASIPASIELNIAQDRSPTIRASLDEVERSLVIAVALVILVVFLFLRSGR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ +++I T   + L G +L   S+  + +  G  VD  I+V E I       
Sbjct: 358 ATLIPAVAVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFT 502
                +   G      T+   +I+ +   + L    G      R FA+T+ ++I IS+  
Sbjct: 418 VKPMVAALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVI 477

Query: 503 AISIVRAMMIFI------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           ++++   M   +         ++++      L+        +       R+  V +    
Sbjct: 478 SLTLTPMMCAHLLRAQPAGEQQRIRGFGKVLLAIQQGYGRSLNWVLGHTRWVMVVLLSTI 537

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           ++     +      +     G +   + A++ +    ++  L+ 
Sbjct: 538 ALNVWLYISIPKTFFPEQDTGRMMGFIQADQSISFQAMQQKLKD 581



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 87/241 (36%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V + ++S+Q    +  +       LV  +    + +A    +     
Sbjct: 246 IHYNNGSPVRLQDVANIVDSVQDVRNAGMSDGKPAVLLVISREPGANIIATVDRIRAELP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S   N         R  + +    ++I+   +++ +++  +     L     
Sbjct: 306 ALRASIPASIELNIAQDRSPTIRASLDEVERSLVIAVALVILVVFLFLRSGRATLIPAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +    
Sbjct: 366 VPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPMV 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ + 
Sbjct: 423 AALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVISLTLT 482

Query: 817 A 817
            
Sbjct: 483 P 483



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     V++ +TE+   ST++       ++ ++ ++  +  ++ +   
Sbjct: 803  TISFNLPDGGSLSEATAAVERAMTELGVPSTVRGMFAGTAQVFQDTLKSQLWLIMAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     +S RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALDAQRNGN--LSARDAIFQASLLRFRPILMTTLAALFGALPLVLSSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + L+    R++ ++
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLYFDRLRSRFSK 1017


>gi|291571841|dbj|BAI94113.1| protein-export membrane protein [Arthrospira platensis NIES-39]
          Length = 463

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 125/490 (25%), Positives = 210/490 (42%), Gaps = 64/490 (13%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVD----EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
            + +  I LGLDLRGGS L +++             L+     + + +   G+    ++ 
Sbjct: 21  ILVRVPIRLGLDLRGGSQLTIQLQTSDEVPRIDERVLEGVQSVIENRVNGLGVSEAVVQT 80

Query: 94  -IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             +++I +        E     +    Q    +     +  L              +  I
Sbjct: 81  VGEDQILVQLPGVSDPEQAERVLGGTAQLDFREQRPGTEGELFAEIQVNRALDAELRQAI 140

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
                  +E+ ++ + +    I                         S  ++ +    ++
Sbjct: 141 ATGDDARLEELLQQLNESNQAI------------------------ASLYQEPIIRGQQL 176

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
                 P     G+   +RF  +   N   +   +  +G  +                  
Sbjct: 177 QDAFPQPTQGGNGWEIVLRFNNEGGRNFAELTKNLAGTGRTIGIFL-------------- 222

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                                   +L    ++    +  I  G A I+GNFT   A  LA
Sbjct: 223 ---------------------DDSLLSSPTVSVEFADTGITGGSAVITGNFTAAEANDLA 261

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
             LR G+LP+ + IVE R VGA LG DSI +   A   GL+L+++FM+  Y   G +AD 
Sbjct: 262 VQLRGGALPVPVEIVENRTVGATLGRDSIQRSIYAGSGGLILVLIFMVAYYRLPGAIADV 321

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++ +  + TLA+ +LLG TLTLP IAG +L IG+AVD+N+L+ ER REE R  ++++ S+
Sbjct: 322 ALVVYALFTLAIFALLGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAGKTLYRSV 381

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           + GF RA+ +I D N+T  IA V LF+ G G V+GFA+T+GL + +SMFTA++  R +M 
Sbjct: 382 ESGFYRAFGSILDGNVTTGIACVALFWLGTGLVKGFALTLGLGVAVSMFTAVTFSRTLMF 441

Query: 513 FIIRYKKMKS 522
            +I   + + 
Sbjct: 442 TVISLPEFRK 451



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 91/226 (40%), Gaps = 4/226 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   +   +      +           G+  A       V+ +   +     I     V
Sbjct: 222 LDDSLLSSPTVSVEFADTGITGGSAVITGNFTAAEANDLAVQLRGGALPVPVEIVENRTV 281

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ I++ I       I +LI++   ++   A+ A   L++    TL  FAL G+ 
Sbjct: 282 GATLGRDSIQRSIYAGSGGLILVLIFMVAYYRLPGAI-ADVALVVYALFTLAIFALLGVT 340

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      +    ++       G  +  ++
Sbjct: 341 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKTLYRSVESGFYRAFGSILDGNV 397

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              I+ + +   G  ++  FA+ +  G+ V+  +++  +  ++  +
Sbjct: 398 TTGIACVALFWLGTGLVKGFALTLGLGVAVSMFTAVTFSRTLMFTV 443


>gi|333002112|gb|EGK21677.1| multidrug resistance protein mdtC [Shigella flexneri VA-6]
          Length = 1021

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/603 (11%), Positives = 160/603 (26%), Gaps = 40/603 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K +           L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG--VLANRPVDLSVVRSN 597
                         +   +     L           +    L   + A++ +    +R  
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGK 574

Query: 598 LES 600
           L+ 
Sbjct: 575 LQD 577



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 799  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 858

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 859  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 918

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 919  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 976

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 977  PLRITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1013


>gi|313673288|ref|YP_004051399.1| acriflavin resistance protein [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940044|gb|ADR19236.1| acriflavin resistance protein [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 1025

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 63/518 (12%), Positives = 151/518 (29%), Gaps = 33/518 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  ++  PS                    L     + +   + +  ++  S +     
Sbjct: 33  YFKLPVNDLPSVDFPTIE---------VSATLPGASPETMASSVALPLEKEFSTIDGITS 83

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            V +  +   +IT+ F   +  +  A  V   +      L  D                +
Sbjct: 84  MVSTNTKGSTRITIQFKLEKDIDVAAQDVQTMIAKALRNLPSDMPSPPSFRKVNPADLPI 143

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                  +      +           QI       Q          +  +  P ++  L 
Sbjct: 144 FYIAVSSK-TLPLYKVHEYADTFIAQQISTLSGVAQVNIYGSQKYAVRIDLKPEKVFSLG 202

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +  +++               G  +    +          + +G               
Sbjct: 203 LSFDEIASTIKK---YNPKLPTGSLYTPFKNFIIDSSGKPSDATG--------------- 244

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
               +I       +        ++   +                     +   +    ++
Sbjct: 245 --FSEIIVRNRDNKILKLKDIADVYDSVENNKVASWYKDTRAIVLAIQRQPGSNTLEIVD 302

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
           +      +L+          +      +   S +  K T  +  GLV++V+F+ +     
Sbjct: 303 SIKKKLPVLKNQIPGSINIDILYDRTISIRESVNDVKFTLILTIGLVVLVIFIFLRNLIA 362

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            ++   ++ + +I T   + LLG ++   S+  ++L +G  VD  I++ E I       +
Sbjct: 363 TIIPAVTLPIAIIGTFMSMYLLGFSVNNLSLMALILSVGFVVDDAIVMLENIFRHIEMGK 422

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR---GFAITMGLSILISMFTA 503
             + +   G    Y TI    ++ +   + + F  G   R    FAIT+ ++ILIS F +
Sbjct: 423 KPYQAAIDGAREIYFTIISMTLSLVAVFIPVLFMKGILGRLLNEFAITISVAILISGFVS 482

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           +S+   M   II+  + K+          +    + + 
Sbjct: 483 LSLTPMMASRIIKVSESKTHGRIYNFFEKVFNFLLKLY 520



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 61/150 (40%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + ++I+I++R      +    TL + I  T     L G   N  ++ A++  +
Sbjct: 342 LILTIGLVVLVIFIFLR-NLIATIIPAVTLPIAIIGTFMSMYLLGFSVNNLSLMALILSV 400

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +                 E     +  +++     +P+    
Sbjct: 401 GFVVDDAIVMLENI---FRHIEMGKKPYQAAIDGAREIYFTIISMTLSLVAVFIPVLFMK 457

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G ++  FAI ++  I+++   S+ +  
Sbjct: 458 GILGRLLNEFAITISVAILISGFVSLSLTP 487



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/222 (12%), Positives = 78/222 (35%), Gaps = 6/222 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                                     +K+      S+I  +     +  +   +   + ++
Sbjct: 806  GQLPAVTISFNLKEGVALSEAVKEIEKLATKNLPSSISTSFQGTAQAFQSSTQGLWILIL 865

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ + + I + + ++ +   L  ++ L       +    L G + N+     ++ L+G  
Sbjct: 866  LAIVVIYIILGVLYESFIHPLTILSGLPSAGLGAILVLKLMGYDLNIYGFVGLIMLLGIV 925

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ D   +       +I   D I +         + T+ AA +  +P+A+    G
Sbjct: 926  KKNAIMMIDFALE--AERKKNIPPLDAIVEGAFIRFRPIMMTTFAALVGAIPIAIGIGAG 983

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 S  I +  G++++   +++I   I  ++     K  +
Sbjct: 984  AEARKSLGIAIVGGLIISQVITLYITPVIYYYLDKISKKIVK 1025


>gi|297618114|ref|YP_003703273.1| acriflavin resistance protein [Syntrophothermus lipocalidus DSM
           12680]
 gi|297145951|gb|ADI02708.1| acriflavin resistance protein [Syntrophothermus lipocalidus DSM
           12680]
          Length = 1039

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/552 (10%), Positives = 152/552 (27%), Gaps = 47/552 (8%)

Query: 1   MRNNPWLV-------ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGG 53
           MR + + V       IL  ++  +G++        +  +D +P                 
Sbjct: 1   MRLSRFAVHRPVTVAILVGVLIVLGIVA-----FSRLAVDLYPDIKLPVA---------A 46

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                     + V   +    + +   L              + + + F      +    
Sbjct: 47  VITTYSGAGPEEVESQVSRPIESIMGTLGNVKEIQSWSAPGSSIVIVRFNWGTDMDFATL 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +   L  + + L     K  +V      + ++              +    +  +   +
Sbjct: 107 NMREKLALIETYLPDGVDKPTVVKMDPTMMPVLQIGVTGGT---DLAQLQDLVEDKIKPE 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +     + +  +  ++  + DP ++     T ++++                    
Sbjct: 164 LERIDGVASVVLTGGVTREVRVDVDPVKIANYGLTMSQITQVLRAD-------------- 209

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                  + +       G       +    +    + +++                I   
Sbjct: 210 ------NFNLAGGTVNHGDRQLFIRSLQQFENIDDIKNVTVTTPAGANVLLSQVAQITDG 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                    +            +   +     E        L           V      
Sbjct: 264 YKDAQQYTRVNGKPSIGIHILKQTDANSVKVSEKVRATLQELSKTIPGGIEVGVVFDQAD 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    K +    A L ++V+++ +      LV   SI L+V+ T  L+     T+ 
Sbjct: 324 FINQSMGTIKRSMLEGALLAMLVIYVFLRSVPSTLVIATSIPLSVVATFLLMYFSKMTMN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + ++ G+ L IG  VD +I+V E I    +  +    +   G S   + +  +  T +  
Sbjct: 384 MVTMGGVALAIGRIVDDSIVVLESIFRHRQAGKPAVQAAVEGASEVGNAVMAATFTTVAV 443

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
              + F  G +    +  A+T+   IL S+  A++I+  +   ++    +  +       
Sbjct: 444 FFPVVFVEGISAILFKPLAMTVSFGILSSLVVALTIIPLLSSRMMTGDIVHEVKTEEGLS 503

Query: 531 FFLIPDCIAIQF 542
                      F
Sbjct: 504 GPRRVLARLYLF 515



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 83/251 (33%), Gaps = 11/251 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +   A   V LS V    +  +      +        +  L+    +SV  +  +    
Sbjct: 243 TVTTPAGANVLLSQVAQITDGYKDAQQYTRVNGKPSIGIHILKQTDANSVKVSEKVRATL 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAIT 698
           +++++ +P                + +      ++  + +AML+           L   T
Sbjct: 303 QELSKTIPGGIEVGVVFDQADFINQSMGTIKRSMLEGALLAMLVIYVFLRSVPSTLVIAT 362

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  T        +  N+  +  V   IG  V+D +VV + +    +         
Sbjct: 363 SIPLSVVATFLLMYFSKMTMNMVTMGGVALAIGRIVDDSIVVLESI---FRHRQAGKPAV 419

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFI 815
               +  +E     +  +        P+    G S I     A+ ++FGI+    SS+ +
Sbjct: 420 QAAVEGASEVGNAVMAATFTTVAVFFPVVFVEGISAILFKPLAMTVSFGIL----SSLVV 475

Query: 816 AAPILLFIYDW 826
           A  I+  +   
Sbjct: 476 ALTIIPLLSSR 486



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 55/138 (39%), Gaps = 8/138 (5%)

Query: 697  ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +    +      G F L   G  FN+ A   V+ L+G +V++ +V+ D ++    L    
Sbjct: 896  VIMFSVPTCFIGGAFGLAVTGRTFNVVAFIGVIMLVGIAVSNAIVLVDYIK---TLRERG 952

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLP---MAVWGGSVIGSFAIPMAFGIVVAASS 811
            +     I+++    L   + T++   I++ P       GG +    A  +  G+  +   
Sbjct: 953  MERNQAIEEAGAVRLRPVLMTALCTIIALFPLALGLGEGGELEAPLATVVIGGLTASTVI 1012

Query: 812  SIFIAAPILLFIYDWRAK 829
            ++ +   +     D+  K
Sbjct: 1013 TLVLVPVVYTIFDDYGRK 1030


>gi|289706225|ref|ZP_06502588.1| protein-export membrane protein SecD [Micrococcus luteus SK58]
 gi|289557064|gb|EFD50392.1| protein-export membrane protein SecD [Micrococcus luteus SK58]
          Length = 608

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 97/490 (19%), Positives = 166/490 (33%), Gaps = 28/490 (5%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDE---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
           S  P     L LDL GG+ +VL  +    +      L    + +R  +   G+    +  
Sbjct: 38  SWAP----KLALDLEGGTQMVLAPETSTGESVTPEQLDQAVEIIRQRVDGSGVAEAEVAT 93

Query: 94  IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
             ++  +        E     +          +                   +   +   
Sbjct: 94  QGSQNVVVSLPGVPDEETRRLIQASADMQFRPVLQSGPGEATPEDQRLPEDQLPKPDGEP 153

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
                    +  ++ +   +   +               +   Q P  L   + T A+  
Sbjct: 154 ADAYDPNWVTPALLAEFQAKDCTAPRDPAAPPPPSDRAIVAC-QPPEELADGVVTPAQ-- 210

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
                       ++ G   +  +             SG+  N    N D           
Sbjct: 211 -----------KYILGPVVIPGTQIKGASNGMAQAQSGVSTNQWVVNIDFDEEGAKTFTE 259

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
             +          R      L   +     +  VI               T      LA 
Sbjct: 260 VTQKLTPYPEGDPRKQFAILLDGDVISAPQSNVVITNGSAQISGPTLNEQTTAQ---LAE 316

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
            L  GSLPI  +I  E+ + A LG D ++ G  A + GL L+ ++    Y   GL+   S
Sbjct: 317 QLNYGSLPISFSIESEQQISATLGRDQLFWGLIAGLIGLGLVAVYQFFQYRALGLLTFAS 376

Query: 394 IFLNVILTLALLSLLGATLT----LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           I +  +LT   +++LG T      L  IAG+++ IGL  DS I+  ERI++E R   +V 
Sbjct: 377 IIVAGVLTWLAIAILGWTDNYRLSLAGIAGLIVAIGLTADSFIVYFERIKDELRAGHTVP 436

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++  G+ RA  TI  S    L+A VVL+F   G VRGFA T+GL+ +  +         
Sbjct: 437 VAVHEGWKRAQRTITASKAVNLLAAVVLYFVAVGNVRGFAFTLGLTAIADLIVVFMFTHP 496

Query: 510 MMIFIIRYKK 519
           +M+ + + + 
Sbjct: 497 LMVLLAQTRF 506



 Score = 96.3 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 28/288 (9%), Positives = 93/288 (32%), Gaps = 12/288 (4%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
                 + +    S        +N   D +G      +  +           +   + D 
Sbjct: 223 QIKGASNGMAQAQSGVSTNQWVVNIDFDEEGAKTFTEVTQKLTPYPEGDPRKQFAILLDG 282

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV--PLSTIQNTEIVGPKISRE 664
              +       +     Q        +    + +++         +I++ + +   + R+
Sbjct: 283 DVISAPQSNVVITNGSAQISGPTLNEQTTAQLAEQLNYGSLPISFSIESEQQISATLGRD 342

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE----FNL 720
            +  G++  +I    + +Y + +++    L    ++I+    T    A+ G       +L
Sbjct: 343 QLFWGLIAGLIGLGLVAVYQFFQYR-ALGLLTFASIIVAGVLTWLAIAILGWTDNYRLSL 401

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS-MAA 779
             +A ++  IG + +  +V ++R++  ++      +    + +       R++  S    
Sbjct: 402 AGIAGLIVAIGLTADSFIVYFERIKDELRA---GHTVPVAVHEGWKRA-QRTITASKAVN 457

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++ + +       +  FA  +    +           P+++ +   R
Sbjct: 458 LLAAVVLYFVAVGNVRGFAFTLGLTAIADLIVVFMFTHPLMVLLAQTR 505


>gi|225629283|ref|ZP_03787316.1| multidrug efflux protein [Brucella ceti str. Cudo]
 gi|260167589|ref|ZP_05754400.1| putative multidrug efflux protein [Brucella sp. F5/99]
 gi|261757012|ref|ZP_06000721.1| RND family transporter [Brucella sp. F5/99]
 gi|225615779|gb|EEH12828.1| multidrug efflux protein [Brucella ceti str. Cudo]
 gi|261736996|gb|EEY24992.1| RND family transporter [Brucella sp. F5/99]
          Length = 1026

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 157/605 (25%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDTAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 90/247 (36%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRVPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPM 1002

Query: 819  ILLFIYD 825
            I + I  
Sbjct: 1003 IFVEIDR 1009


>gi|167763441|ref|ZP_02435568.1| hypothetical protein BACSTE_01815 [Bacteroides stercoris ATCC
           43183]
 gi|167698735|gb|EDS15314.1| hypothetical protein BACSTE_01815 [Bacteroides stercoris ATCC
           43183]
          Length = 1036

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/637 (10%), Positives = 170/637 (26%), Gaps = 43/637 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRIKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++      +      I  S       +D +       +          +     P +
Sbjct: 135 PSQLMTICLTSNDPKFDEIYLSNFATINVLDLLRRIPGVGRVSNIGSRYYAMQIWAMPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSSAKQFEDIVVRANANGSIIRLRDVARVSLEASSYSTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               +        + A         +          S      T      LV++V+F+ +
Sbjct: 301 MEVADNVKKAMEEISANFPEGMSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVFLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE- 440
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENVEHL 420

Query: 441 ENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFFG--GGAVRGFAITMGLSIL 497
              +  S + +     +  A + I  S +   +   V F  G  G   R F IT+ +S+L
Sbjct: 421 METEKLSPYEATKKAMNGLASALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVL 480

Query: 498 ISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
           +S   A+++   M   I        +    + I+             I+      R    
Sbjct: 481 LSTVVALTLSPVMCSLILKPDSGKKKNIVFRKINEWLNISNHKYIGVISRVIKHPRRLMS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              ++     I           ++ +G  ++ +       L   R   +           
Sbjct: 541 AFGMVLIAIFIIHRLIPTSFLPVEDQGYFKVELELPEGSTLERTRIVTDRAVQYLEQNPY 600

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +N          +       + +   +  +   
Sbjct: 601 VAYVQNVTGSSPRVGSNQARSELTVILKPWEERKNTT 637



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 62/138 (44%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENV--EH 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
            + T  +S  +   K++N      + TS+      +P+  + G  G +   F I +A  +
Sbjct: 420 LMETEKLSPYEATKKAMNGLASALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSV 479

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   ++   +P++  +
Sbjct: 480 LLSTVVAL-TLSPVMCSL 496



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +         A+ G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVAVCGLENDIYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDNGGDLVQSAIHAAQLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            + A    I +     + IY  + K
Sbjct: 1005 IFAIVFGIVLVPFFFVLIYKAKEK 1028


>gi|330816094|ref|YP_004359799.1| AcrB/AcrD/AcrF family protein [Burkholderia gladioli BSR3]
 gi|327368487|gb|AEA59843.1| AcrB/AcrD/AcrF family protein [Burkholderia gladioli BSR3]
          Length = 1038

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/550 (12%), Positives = 155/550 (28%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVSLRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +L+   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPILT-LAITSKTLPLSQVQDLTDTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALAQYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAKVIAGTENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +          +   +   T++    +   L+          +          +    
Sbjct: 275 VDSEPAIIVNVQRQPGANVIQTVDAIKAILPKLQETLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELALAVVLVVLVMYLFLANIYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +    +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGEGPLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+   K           +I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPKGEHRFETRVHVVIDKVIA 514

Query: 540 IQFMRARFWG 549
                 R+  
Sbjct: 515 RYGTALRWVL 524



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANIYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +         +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGEGPLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAVVSLTLVP 483



 Score = 42.4 bits (97), Expect = 0.38,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +         S R+ I ++        + T++AA +  +P+ V    G  + 
Sbjct: 927  IMMIDFALE--AERNEGKSPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELR 984

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                I +A G++V+   ++F    I L       +
Sbjct: 985  QPLGIAIAGGLIVSQVLTLFTTPVIYLGFDSLARR 1019


>gi|240140638|ref|YP_002965118.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium extorquens AM1]
 gi|240010615|gb|ACS41841.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium extorquens AM1]
          Length = 1043

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/652 (12%), Positives = 196/652 (30%), Gaps = 35/652 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   G L  L     +  + +FP  +P      G         +     
Sbjct: 9   RPRLAIVIALIITIAGGLALL-----RIPVAQFPDIVPPQVSVSG---------MYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +     + +      +     +  + +SF      +     V   +Q 
Sbjct: 55  AEVVEASVAQPLEAQVIGVDRMIYMKSTSANDGSYSLAVSFDLGSDPDINTVSVNNRVQS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   L    +    ++ +    +      +  +   I   +D+I  +    
Sbjct: 115 ALSQLPSEVQLQGLKVQKKSSAILLFAVLYSETGAQDPLFITNYAIINVLDEISRTAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     R+   +    D  RL  L    + +       +        G   + +    Q 
Sbjct: 175 QANLFARMNYSMRIWFDTDRLTSLTLAPSDVVDAIRAQSVQAPVGRIGAPPITNEQQIQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ +  +S                +    +                 +           
Sbjct: 235 NVQTQGRLS-------------TPAQFGAIVLRTNSDGSVVRIRDVARVELSAQSFDSES 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T          L A        +V   +      + S 
Sbjct: 282 RLDGRPGVPVAIYLVPGANAVRTASAVKATLEKLSARFPAGLRYVVVHDSTTFVKDTISE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV++V+F+ +   +  ++   ++ +++I T A+L +LG +    S+  +V
Sbjct: 342 VLRTLAEAFVLVVLVVFLFLGNLRATVIPAIAVPVSLIGTFAVLYVLGYSANTVSLLAMV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     ++   S   +  +  ++  + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEHPELSPAEATKLAMTQITAPIIAITLVLLSVFVPIAF 461

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R FA+T+  ++LIS   A+++  A+    +R  + +   +  +        
Sbjct: 462 IPGVSGTLFRQFAVTISAAMLISAINALTLSPALCGVFLRPTRARRGIMGRVLNGIDWVR 521

Query: 537 CIAIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +R   R   + + ++          +     G   +       ++ +  D + V
Sbjct: 522 DRYAGGVRRLVRVSALSLVLVLLFAGGIFGLSRITPAGFLPEEDQGAFFVSVQLPDGASV 581

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                     +   ++  G    L  + +   D  A+     +V +      
Sbjct: 582 ARTSAVAAEVERLLKDMPGVNQVLAIVGFSLLDGAAEPNSAFLVAQLKPFAD 633



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/438 (9%), Positives = 129/438 (29%), Gaps = 21/438 (4%)

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            +           +  A + N        +     +S   S      RAY+         +
Sbjct: 601  VNQVLAIVGFSLLDGAAEPNSAFLVAQLKPFADRRSAAESAGALIGRAYAAAATIGQATV 660

Query: 472  IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
            +   +    G     GF   +            ++VR ++    R  ++  +     +  
Sbjct: 661  LPFNLPPIVGLSTSGGFEYVLEAREGQDPAATDAVVRGLVAAANRDPRLARVFSTFTASN 720

Query: 532  FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
              I   I     +     +         ++  ++ +  N        + +   A+   D+
Sbjct: 721  PSIFLDIDRTKAQVLGLAMSDVFSSLQATLGGVYVNNFNLYGR-TWQVNVEGEADNRGDI 779

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLV-----------RLQYQPGDSVAQTRVLEMVKK 640
              + +       G +        +  ++           R     G           +  
Sbjct: 780  RDIWNIYVRGASGQMVPVRSVASERIVLGPQVLTRYNNFRAVSVNGSPAPGISSGAAMAA 839

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY---IWIRFKWYFALGAI 697
                         +        +E    G   +++    +  Y   + +   W   +  +
Sbjct: 840  MEQISDRTLPEGYSYEWTGTAYQEQQASGQTWIVLGLAFLFAYLFLVALYESWTIPIPVL 899

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             ++++    +     L G+  +L +   ++ LI  +  + +++ +  +   +     +  
Sbjct: 900  LSVVVGAFGSYLAVKLAGLSLDLYSEIGLVVLIALAAKNGILIVEFAKDQREA---GVPI 956

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIF 814
            ++   +   +     + TS+A  + ++P+ +  G+           +  G++ A+S  IF
Sbjct: 957  QEAAIRGAEQRFRAVMMTSIAFILGLVPLVIATGAAQISRRDVGTAVFGGMIAASSIGIF 1016

Query: 815  IAAPILLFIYDWRAKNAR 832
            +   + + +   R + ++
Sbjct: 1017 LVPMLYVTVQTLRERVSK 1034



 Score = 38.1 bits (86), Expect = 6.7,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 60/149 (40%), Gaps = 11/149 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +     + + +  T     + G   N  ++ A++  IG  V+D +VV + + + + 
Sbjct: 364 LRATVIPAIAVPVSLIGTFAVLYVLGYSANTVSLLAMVLAIGIVVDDAIVVVENV-ERVM 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFIS---VLPMAVWGGSV---IGSFAIPMAF 803
                +S  +    ++ +     +       +     +P+A   G        FA+ ++ 
Sbjct: 423 EEHPELSPAEATKLAMTQITAPII---AITLVLLSVFVPIAFIPGVSGTLFRQFAVTISA 479

Query: 804 GIVVAASSSIFIAAPIL-LFIYDWRAKNA 831
            ++++A +++ ++  +  +F+   RA+  
Sbjct: 480 AMLISAINALTLSPALCGVFLRPTRARRG 508


>gi|332300317|ref|YP_004442238.1| acriflavin resistance protein [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177380|gb|AEE13070.1| acriflavin resistance protein [Porphyromonas asaccharolytica DSM
           20707]
          Length = 1039

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/680 (10%), Positives = 192/680 (28%), Gaps = 50/680 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++++  +  +GL       L +  +D  P       +                 
Sbjct: 9   RRPVTTIMIFVGVVVLGLFA-----LTRLPIDLLPDMQINRVM---------IVTSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +      + + +          ++  + +TL   +    EN  +     +  
Sbjct: 55  APEEVENNVTKPIQNVLNGINGVKHITSQSKENVSVVTLELREGLDIENAINDTRDKISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L        ++     ++ I++     D       +       Q I  +G  +   
Sbjct: 115 ITEVLPDGAGTPNIIKFGMDDLPILMLSIKSDASSKSLYKILN---DQLITPLGRIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+    DP +L     T + +S    + N +       +   + S     
Sbjct: 172 GVNLLGARQRQINVYCDPHKLESYGITVSDVSNLIAVANRNISAGSMNLETSKISLRAIG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +  ++  + +                         R  +     ++           
Sbjct: 232 EIVEPKQLEELPITSFA--------------------GRTIYLRDVASVVDGDPEQQTLA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +   ++  +     +        +           V        + S + 
Sbjct: 272 YVDNQRGAMLMLMKQSGANTVQVNKRVLKALPQIVKNLPTDIKIEVIMDQSDFIVRSINS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   +V++++ + +   +   +   +I ++++     L L G +L + S++ + 
Sbjct: 332 LSSTIGITFCVVMLIVLLFLGRWRATFIIVLTIPISLLSAFIYLLLTGNSLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD  I+V E I     +      +     +    ++  S +T L   + +    
Sbjct: 392 IAIGMVVDDAIVVLENITNHIERGSYPKQAAVHATNEVALSVIASTLTMLAVFLPMVMMQ 451

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------SIDINPL 528
           G      R     + + +++S   A+++   +   ++R  + +              + +
Sbjct: 452 GMAGLLFRQLGWIVSIVMIVSTICALALTPTLCAHMLRANRQRQEGKVSQKILRPFNDFI 511

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            R  +         +R ++  VG+S+     S+ L       +     GG          
Sbjct: 512 QRLTVFYQRTLAWVLRHKWLTVGLSLGIFALSLTLGSLVKTEFMPQGDGGYIFVKAYYPV 571

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                           +   +  + E       Q     S A T   +     ++  + L
Sbjct: 572 GTTIDRPLAEGHRLTEEWHKKYPEIEMLQFSTGQADAFQSGASTLAQDNGDNILSFNIKL 631

Query: 649 STIQNTEIVGPKISRELIRK 668
                 +    +++ E+ R 
Sbjct: 632 VDASERKRSSKEVAAEMRRD 651



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 80/249 (32%), Gaps = 12/249 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R     +            +      L           +V + V K + +IV       
Sbjct: 254 LRDVASVVDGDPEQQTLAYVDNQRGAMLMLMKQSGANTVQVNKRVLKALPQIVKNLPTDI 313

Query: 654 TEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              V    S  ++R          I   + MLI +    +W      + T+ + +     
Sbjct: 314 KIEVIMDQSDFIVRSINSLSSTIGITFCVVMLIVLLFLGRWRATFIIVLTIPISLLSAFI 373

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           +  L G   N+ +++++   IG  V+D +VV + +             +     + NE  
Sbjct: 374 YLLLTGNSLNIISLSSLSIAIGMVVDDAIVVLENI---TNHIERGSYPKQAAVHATNEVA 430

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD- 825
              + +++      LPM +  G            ++  ++V+   ++ +   +   +   
Sbjct: 431 LSVIASTLTMLAVFLPMVMMQGMAGLLFRQLGWIVSIVMIVSTICALALTPTLCAHMLRA 490

Query: 826 -WRAKNARI 833
             + +  ++
Sbjct: 491 NRQRQEGKV 499



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 82/226 (36%), Gaps = 9/226 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L ++         +  +++ +V +   P    A + ++   +K + EI     +     
Sbjct: 795  ELGNVVEHFAPPAIYQKDRSRVVTIALTPAPKAALSDLVRTARKTLDEIDMPEGVSYEIT 854

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-- 714
               +  +E        +++    + I +   F+   +   +    +    T     L   
Sbjct: 855  GAFEQQQEAFADLGTLLLLIVFLVFIVMAAEFESLASPF-VIMFSVPFAFTGVIIGLLVT 913

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++ A    + L+G  V + +V+ D     +      +S R  +  +    L   + 
Sbjct: 914  GVPLSIIAFIGAIMLVGIVVKNGIVLID---YAILNRERGMSVRTALLHAGASRLRPVLM 970

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            T++     ++PMA+    G  +     + +AFG+ ++   ++ +  
Sbjct: 971  TTLTTVFGMIPMAIGIGQGSEMWQPMGVTVAFGLTISTLVTLLLIP 1016


>gi|260592683|ref|ZP_05858141.1| multidrug resistance protein, AcrB/AcrD family [Prevotella
           veroralis F0319]
 gi|260535453|gb|EEX18070.1| multidrug resistance protein, AcrB/AcrD family [Prevotella
           veroralis F0319]
          Length = 1087

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 77/695 (11%), Positives = 191/695 (27%), Gaps = 48/695 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G++  +        ++++P   P   IS+    +G        D
Sbjct: 8   KRPVLSTVISIFFVLLGIIGLM-----SLPIEQYPDIAPPT-ISISTFYQG-------AD 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +N  +    + + + ++       +        IT+ F         A  V   + 
Sbjct: 55  AQTVLNSVITPLEESI-NGVENMTYIQSTATNAGMAMITVYFKQGADPNMAAVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  +  +  +  +  +  ++V+     D         +       +  +      
Sbjct: 114 QAQALLPAEVTRVGVTVSKRQSSNVVMYSLTTDDGRYDDEFLTNYNNINIVPMLKRVNGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P +++Q     + +S      N       FG +         
Sbjct: 174 GDVQTPGMKTYSMRIWLQPDKMKQYGLVPSDISGALAEQNIEAAPGSFGEQSKLKF---- 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                     +    I       +         +          
Sbjct: 230 ------------EYTMRYKGRLKTPEEYGNIIISSNTNGQTLHLRDVAKVELGGLQYSVA 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      + +  A  +     +      A  +    P     +E+        S  
Sbjct: 278 MRNNGQPAVLGMVNQVAGSNATQIADDVKAALADAQKQMPPGMKVTIEQDVTEFLFASIE 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV  V+++ +   +  L+   ++ + +I T   L + G ++ L +++ +
Sbjct: 338 EVVRTLVITLVLVFFVVYVFLQDFRSTLIPMIAVPVALIGTFFFLWVFGFSINLLTLSAL 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L I + VD  I+V E +  +      S   +     +     I    +      V + F
Sbjct: 398 LLAIAIVVDDAIVVVEAVHAKLDLGYKSAMTAAIDAMNEISGAIISITLVMSAVFVPVSF 457

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK----KMKSIDINPLSRFF 532
            GG +    R F +TM +SI+IS   A+++  A+    ++      + K +         
Sbjct: 458 IGGTSGTFYREFGVTMAVSIVISALNALTLSPALCAIFLKPHSDDEEHKKLSRIDRFHMA 517

Query: 533 LIPDCIAIQ---------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                  I           +  R+      ++  +  +  +         D   G    +
Sbjct: 518 FNTQYDKINAKYQKKVEKIINHRWISGTAVVVGFVALVLTMTFTKTGLVPDEDTGTLFAM 577

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           ++  P         +       ++   +   +  +V   +  G    Q   +  +K    
Sbjct: 578 VSMPPGTSQEETQKVVDQVDKMLANNPYIERREQIVGYNFLAGQGSNQATFIVKLKPFAE 637

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
               +     +   G  I+   I      +I+  I
Sbjct: 638 REYGMFDRIKSVFTGAGIAGLFIDPTSSNMILGMI 672



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 29/280 (10%), Positives = 79/280 (28%), Gaps = 16/280 (5%)

Query: 560  SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
               ++     +   +          A     +S   +        +I+  N         
Sbjct: 789  FRVMIQGTAESRMDESSMNNIYVRTAAGMAPVSEFCTLKRVYGPSNITRFNLFTSIAVNA 848

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                      A     E+ K+ + +         T       +          +I     
Sbjct: 849  TPANGVSSGEAIKAAEEVAKQVLPQGYGYEFSGLTRSEQESSNS-------TAMIFVLCI 901

Query: 680  MLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + +Y+ +      +   L  I ++   +     F   FG   ++    +++ LIG    +
Sbjct: 902  VFVYLILSAQYESYILPLAVILSIPFGLAGAFIFTMTFGHSNDIYMQISLIMLIGLLAKN 961

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---V 793
             +++ +   +      T ++ +          L   + TS+A  + +LP+    G     
Sbjct: 962  AILIVEFALE---RRRTGMAIKYAAILGAGARLRPILMTSLAMVVGLLPLMFASGVGHNG 1018

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              +       G+++     +F+   +       + +   I
Sbjct: 1019 NQTLGAAAVGGMLIGTLCQVFVVPALFAGFQYLQERIKPI 1058


>gi|317049349|ref|YP_004116997.1| acriflavin resistance protein [Pantoea sp. At-9b]
 gi|316950966|gb|ADU70441.1| acriflavin resistance protein [Pantoea sp. At-9b]
          Length = 1074

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/531 (11%), Positives = 147/531 (27%), Gaps = 38/531 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L   +   G+               +P+                   +    
Sbjct: 9   QRPVATILLMVGVLISGIFAYKFLSTSALPQVDYPTIQ--------------VTTLYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +        +     + ITL F+     +    +V   +  
Sbjct: 55  SPDVMASSVTSPLERQLGQMAGLSQMTSTSSGGSSIITLKFSLDLSLDVAEQEVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            N+ L  D              S V++            +    +  +   ++       
Sbjct: 115 ANNLLPSDLPNPPTYKKVNPADSAVITLAASSD-TLPLTQVQDLVNTRVALKLSQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + DP  L     T   ++      N +     F  ++   +     
Sbjct: 174 MVTLAGGHQPAIRVQMDPKALAAHNLTLEDVNTLISNGNVNGSKGGFDGKYHSVTIDAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                      ++                +I +         
Sbjct: 234 QLRTAEE--------------------YGNLIITYQNGAALRLKDIAHIEQGPENSFQSA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++        L+A         +          S S 
Sbjct: 274 WANNSPAIVISVQRQPGANVIQVVDAIKAKLPTLQAALPDGVKMSILSDRTQTIRASISD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   LV++V F+ +      L+   ++ L++I T  ++ L   +L   S+  + 
Sbjct: 334 VQFELMLSVALVVMVTFLFLRNIAATLIPSVAVPLSLIGTFGVMYLADFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  +D  I+V E I     + ++   +   G  +   TI     + +   + L F G
Sbjct: 394 IATGFVIDDAIVVVENISRRLEEGETPMQAALKGSQQIGFTIISLTFSLIAVLIPLLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
              G   R FAIT+ +SIL+SM  ++++   +  +++++   +        
Sbjct: 454 DVVGRLFREFAITLAVSILVSMLVSLTLTPMLCAYLLQHIPPEKQSRFSRK 504



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 85/229 (37%), Gaps = 12/229 (5%)

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             + SFQ+     +  + +  Q        +V++ +K K+  +           +    +
Sbjct: 265 GPENSFQSAWANNSPAIVISVQRQPGANVIQVVDAIKAKLPTLQAALPDGVKMSILSDRT 324

Query: 663 RELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           + +          + + ++ + M+ ++++R      L     + L +  T G   L    
Sbjct: 325 QTIRASISDVQFELMLSVALVVMVTFLFLR-NIAATLIPSVAVPLSLIGTFGVMYLADFS 383

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            N  ++ A+    G+ ++D +VV + +    +      +      K   +     +  + 
Sbjct: 384 LNNLSLMALTIATGFVIDDAIVVVENI---SRRLEEGETPMQAALKGSQQIGFTIISLTF 440

Query: 778 AAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +    ++P+   G   G +   FAI +A  I+V+   S+ +   +  ++
Sbjct: 441 SLIAVLIPLLFMGDVVGRLFREFAITLAVSILVSMLVSLTLTPMLCAYL 489



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/223 (17%), Positives = 87/223 (39%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +      +     + + +   ++   S+I           +      +  +
Sbjct: 841  NQFPAVMVSFNLNSDYSLEDAQKAITEVTQQLNLPSSITLRYQGETSAFQSATSNTLWLI 900

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + I M + + I ++ +   +  ++TL       L    L G EF+L A+  V+ LIG 
Sbjct: 901  LAALITMYVVLGILYESFIHPVTILSTLPSAAVGALLTLLLAGSEFSLIALIGVILLIGI 960

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   +        +S RD I ++        + T+MAA +  LP+ +    
Sbjct: 961  VKKNAIMMIDFALE--AENKEGMSPRDAIHQACLLRFRPILMTTMAALLGALPLMLASGS 1018

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     + +  G++V+   ++F    I L+   W  +  R
Sbjct: 1019 GAELRQPLGLVIVGGLIVSQVLTLFSTPVIYLWFDGWAQRGKR 1061


>gi|54307314|ref|YP_128334.1| putative multidrug resistance protein [Photobacterium profundum
           SS9]
 gi|46911734|emb|CAG18532.1| putative multidrug resistance protein [Photobacterium profundum
           SS9]
          Length = 1038

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 74/611 (12%), Positives = 180/611 (29%), Gaps = 44/611 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAIF-----KMQVREYPDMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    ++  +          S     + IT++   +         +      
Sbjct: 55  SANLIQGFITQPLEQAIAQADNIDYMTSSSVLGSSTITVTMKLNTDPNGALADILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D+++S   + +  + R    Q+       
Sbjct: 115 VRSQLPKESEDPTVTMSTGSTTAVMYIGFTSDELVSS--QITDYLERVVTPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP ++     T   +                        + N Y
Sbjct: 173 KVDLYGGLKYALRVWLDPPKMAAYNLTATDVMSVL--------------------NANNY 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +    L   TA+        +  +       +         +    +  +   
Sbjct: 213 QSATGQAVGEFVLYNGTADTQVSNTDELAKLVVSTKNGQVIRLGDIAKVSLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L+          V   +  A   S   
Sbjct: 273 SANGEEAVVAAINAAPSANPINIAADVLTLLPELKRNMPSNIKMNVMYDSTIAINESIQE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ + G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSFRAVLIPIITIPLSLIGVALVMQMFGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +  F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGEPPFRAAIIGTREIAVPVIAMTLTLGAVYAPIAMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  ++ +S   A+++   M   +++  +  S   + +  F       
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSKMLKANEKPSKFESTVHSFLDRMTNR 512

Query: 539 AIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + +           V  +I+     +   F        + KG + +   A    +L  
Sbjct: 513 YEKMLGGVMTMRPVVIVFAAIVLVSLPLLFKFIPSELAPSEDKGVLMMMGTAPSNANLDY 572

Query: 594 VRSNLESLQIG 604
           + + ++ +   
Sbjct: 573 IENTMQEVNKM 583



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 88/257 (34%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     + + L  +                   E            + +     +  + 
Sbjct: 244 VVSTKNGQVIRLGDIAKVSLEKSHDIYRASANGEEAVVAAINAAPSANPINIAADVLTLL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++   +P +   N          E I++ I  ++ +A+ +L+ I +    +   L  I 
Sbjct: 304 PELKRNMPSNIKMNVMYDSTIAINESIQEVIKTIVEAALIVLVVITLFLGSFRAVLIPII 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +        +FG  +NL  + A++  IG  V+D +VV + +    +         
Sbjct: 364 TIPLSLIGVALVMQMFGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGEPPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVIAMTLTLGAVYAPIAMMGGITGSLFKEFALTLAGAVFVSGIIALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +     K ++
Sbjct: 481 SPMMCSKMLKANEKPSK 497



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 75/198 (37%), Gaps = 8/198 (4%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI--WIRFK 689
            T + + +    TE V             +  + +     + +  +    +IY+   I+F+
Sbjct: 809  TAMGDAINWFQTEAVDKLPSGYQYDFMGEARQYVTEGSALYMTFALALAIIYLVLAIQFE 868

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  + ++ L I   L   +      N+ +   ++TLIG      +++ +  ++  
Sbjct: 869  SLRDPLVILVSVPLAICGALIALSWGAASMNIYSQVGLITLIGLITKHGILICEVAKEEQ 928

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GI 805
             L+  +    + + ++    L   + T+ A    ++P +   G      F+I +    G+
Sbjct: 929  LLHQKNR--MEAVTEAAKVRLRPILMTTAAMIAGLIPLLYASGAGAAQRFSIGIVIVSGL 986

Query: 806  VVAASSSIFIAAPILLFI 823
             +    ++F+   I  ++
Sbjct: 987  AIGTIFTLFVLPVIYTYL 1004


>gi|300871144|ref|YP_003786016.1| preprotein translocase [Brachyspira pilosicoli 95/1000]
 gi|300688844|gb|ADK31515.1| preprotein translocase [Brachyspira pilosicoli 95/1000]
          Length = 314

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/296 (28%), Positives = 157/296 (53%), Gaps = 11/296 (3%)

Query: 539 AIQFMRARFWGVGISILF----SICSICLLFTHGLNYGIDFKGGIQLGVLAN--RPVDLS 592
            I F++       IS +         I  L T+  N GIDF GG++L V  +    ++++
Sbjct: 23  KIPFVKFMPVAAVISSILFIASIGLFINKLTTNSFNMGIDFAGGVELQVKIDNLEVINIA 82

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +R+   +     ++ Q  +GE N    L    G +    R ++++  K T+     T+ 
Sbjct: 83  EIRNLYRNFGTETVNIQELEGEDNINAFLLRFRGSNEESDRAMQVLYDKYTK--EKVTLI 140

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + I+   +S + ++   + VI+S I ++IYI IRF + +A  AI TLI ++    G   
Sbjct: 141 GSNIISGVVSSDNLKLAFILVIVSWIIIMIYITIRFNYRYAFPAIITLIHNVVIVFGILL 200

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
               EF++  ++++LTLIGY++ND +VV+DR+R+N  +      F+++++ S+N  +GR+
Sbjct: 201 FLNKEFSVLVLSSMLTLIGYTINDIIVVFDRIRENADVKR---PFKEIVNISLNNVVGRT 257

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           V TS++  ++ L + +WGG ++  FA     G+V+   +S FIA+ +L+     + 
Sbjct: 258 VITSVSTLLAALAIMIWGGFILYDFAFTFFCGVVIGTYASNFIASGLLILFMKGKK 313


>gi|332524540|ref|ZP_08400746.1| AcrB/AcrD/AcrF family efflux transporter inner membrane protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332107855|gb|EGJ09079.1| AcrB/AcrD/AcrF family efflux transporter inner membrane protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 1060

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/630 (12%), Positives = 167/630 (26%), Gaps = 52/630 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +V++   +  +GLL      L +  +++ P A                 +     
Sbjct: 9   KKPVAMVVVIIAMMALGLLA-----LSRLKVNQLPDAEQPVL---------AVTIPYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++    +        +  +    + + F   +     +D+V   +  
Sbjct: 55  SPETVEREVVDRIEKALQGISGVDQLRSTSAEGSATLIIVFDFGKDLVLASDEVRNAIGS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL V+ ++ +L         I+    +         E S     Q  D+        
Sbjct: 115 VRHKLPVEMREPVLQRLDPNTQPIMQLALSSTTQSHA--EISRLAEDQLADRFRAIPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  +L       +LR+   +  ++       N +             S     
Sbjct: 173 VVNVGGALSRELSVLLRAQKLREYEVSVTEVVAALRAQNATAPVGKVRGTLEDQSIRLVG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       I     G           I    A +    
Sbjct: 233 RIEHPADFG--------------------QIVIKRRGNELVRLAQVAVIEDGYAELTSRS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +           +   + S     +    +A  +R          V          S   
Sbjct: 273 IRNGNPNVGLSITRTREASTVSVADEVRRVAEDIRKTLPEGTTLTVTRDGGEEAQSSLDN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   AGL + V+++ +   +  L+   S+  +V+     +   G TL   S+ G+ 
Sbjct: 333 VIHALVFGAGLTVFVVYLFLNSWRSTLITALSLPTSVLAAFIAVWACGFTLNFMSLLGLS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478
           L IG+ +D  I+V E I       +    +   G S    A +    S +   I   V+ 
Sbjct: 393 LAIGVLIDDAIVVRENIVRHLEMGKDRISAALQGTSEIGLAVTATTFSIVAVFIPIGVMP 452

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK------------SIDIN 526
              G   R F +T+  S+L+S+F + ++   +  +                     ++  
Sbjct: 453 GLAGEWFRPFGLTVVASVLVSLFVSFTLDPMLSAYWGDPPGRHLQPKRGIEAKLARLNAW 512

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLA 585
                      +       R+        F           G ++      G I + V  
Sbjct: 513 FDELAERYSRVVGWALHHRRWMTAFAVASFVAALALQARFGGTSFLPTSDVGTIAVEVRT 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                L   R  +E+               
Sbjct: 573 PASSSLEYARLKVEAAAALAREMPETVATN 602



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 80/258 (31%), Gaps = 9/258 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G I +    N  V L+ V    +                  L   + +   +V+  
Sbjct: 237 PADFGQIVIKRRGNELVRLAQVAVIEDGYAELTSRSIRNGNPNVGLSITRTREASTVSVA 296

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA-MLIYIWIRFKWY 691
             +  V + I + +P  T       G + ++  +   I  ++  A   + +       W 
Sbjct: 297 DEVRRVAEDIRKTLPEGTTLTVTRDGGEEAQSSLDNVIHALVFGAGLTVFVVYLFLNSWR 356

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KL 750
             L    +L   +          G   N  ++  +   IG  ++D +VV    R+N+ + 
Sbjct: 357 STLITALSLPTSVLAAFIAVWACGFTLNFMSLLGLSLAIGVLIDDAIVV----RENIVRH 412

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVV 807
                       +  +E       T+ +     +P+ V     G     F + +   ++V
Sbjct: 413 LEMGKDRISAALQGTSEIGLAVTATTFSIVAVFIPIGVMPGLAGEWFRPFGLTVVASVLV 472

Query: 808 AASSSIFIAAPILLFIYD 825
           +   S  +   +  +  D
Sbjct: 473 SLFVSFTLDPMLSAYWGD 490



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 11/196 (5%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               +          +   V     K    +              +    + R     + 
Sbjct: 797 DGKRMIAVAANAQGRSAGEVTADALKIARSMDFPPGYALELAGTSRDQEMVFRDLGTALF 856

Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
                M + + ++F  +   L  + +L L +   +      G   NL +   V+ L+G  
Sbjct: 857 AGIGLMYLILVMQFGSFTTPLAVMLSLPLSLIGVVLALLATGGTLNLMSFIGVIMLMGLV 916

Query: 734 VNDKVVVYD--RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             + +++ D  R R+        +     +  +  + L   + T++A    +LP+AV   
Sbjct: 917 AKNAILLLDAARARE-----AEGLDREAALAAAGRQRLRPILMTTLALIAGMLPVAVGVG 971

Query: 790 -GGSVIGSFAIPMAFG 804
            GG      A+ +  G
Sbjct: 972 EGGEFYRPMAVAIIGG 987


>gi|89073894|ref|ZP_01160401.1| putative multidrug resistance protein [Photobacterium sp. SKA34]
 gi|89050429|gb|EAR55930.1| putative multidrug resistance protein [Photobacterium sp. SKA34]
          Length = 1025

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/609 (11%), Positives = 157/609 (25%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G          +  + ++P                         
Sbjct: 9   RRPVLAISISLMIALLGFQAIF-----KMQVRQYPEMTNTVVT---------VSTAYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +                + IT+    +         +   +  
Sbjct: 55  SADLMQGFITQPLEQAIAQADNIDYISAQSTLGMSTITVQMKLNTNPNAALADILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T     ++      + + S   + +  + R    Q+       
Sbjct: 115 VRSQLPTETQDPTITLSTGGNTGVLYLGFTSNSLNSS--QINDYLERVVKPQLFTVSGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP ++     +   +       N           F+  +     
Sbjct: 173 KVDMYGGVPYALRVWLDPQKMAAFNLSATDVIQVLKANNYQSAVGQAKNDFVLYNGSANT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +                      +       +         +           
Sbjct: 233 QSNSPETLE--------------------KLVVTSKDGQVTRLGDIAKVTLSKESDTYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +          L   ++          V   +  A   S   
Sbjct: 273 TANGQEAVVAAIEAAPSANPIDISADVLKLLPTIKRNMPSTIKMTVMYDSTIAINDSIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L+++    ++ L G +  L ++  +V
Sbjct: 333 VIKTILEAAMIVLVVIALFIGSLRSVLIPIITIPLSLVGVALVMQLFGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  QS F +  +G       +    I        +   G
Sbjct: 393 LAIGLVVDDAIVVLENVERHMKMGQSPFRAAIIGTREIAIPVISMTIALGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ IS   A+++   M            K  +++          
Sbjct: 453 GLTGSLFKEFALTLAGAVFISGIIALTLSPVMCAHFLKENAAPNKFEQAVHRFLDRLTLR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           V     F        F        +  G +     A    +L  
Sbjct: 513 YEKMVGGIMKMRSVVIVFAICAFVSLPFLFKFIPSELAPAEDSGVVVFQGNAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +   +  + 
Sbjct: 573 IEDTMNQVN 581



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 79/188 (42%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           ++L  +K+ +   + ++ + ++ I       E+I+  +   +I  + + ++I        
Sbjct: 301 KLLPTIKRNMPSTIKMTVMYDSTIAINDSIHEVIKTILEAAMIVLVVIALFIG---SLRS 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  I T+ L +        LFG  +NL  + A++  IG  V+D +VV + +    +   
Sbjct: 358 VLIPIITIPLSLVGVALVMQLFGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---ERHMK 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              S          E     +  ++A      P+A+ G   GS+   FA+ +A  + ++ 
Sbjct: 415 MGQSPFRAAIIGTREIAIPVISMTIALGAVYAPIALMGGLTGSLFKEFALTLAGAVFISG 474

Query: 810 SSSIFIAA 817
             ++ ++ 
Sbjct: 475 IIALTLSP 482



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 67/177 (37%), Gaps = 7/177 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             +   +G           +     ++   + + + I+F+     L  + ++ L I   L 
Sbjct: 830  YSYNYLGESRQYVTEGNALYATFGLALAVIFLVLAIQFESLRDPLVILVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TLIG      +++ +  ++    +  +    + + ++    L
Sbjct: 890  ALAWGATTLNIYSQIGLITLIGLITKHGILICEVAKEEQLYHGKNR--LEAVMEAAKIRL 947

Query: 770  GRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFI 823
               + T+ A    ++P+    G   +  F+I +    G+ +    ++F+   I  F+
Sbjct: 948  RPILMTTCAMIAGLIPLLYASGAGAVSRFSIGIVIVAGLSIGTLFTLFVLPVIYTFL 1004


>gi|291616034|ref|YP_003518776.1| MdtC [Pantoea ananatis LMG 20103]
 gi|291151064|gb|ADD75648.1| MdtC [Pantoea ananatis LMG 20103]
          Length = 1033

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 67/530 (12%), Positives = 145/530 (27%), Gaps = 33/530 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +          +  L     + +   +    +     +    
Sbjct: 28  GYRLLPVAPLPQVDFPTIM---------VNASLAGASPETMAATVATPLERSLGQIAGIT 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +  Q  + I L F  +R     A  V   +    S L                 + 
Sbjct: 79  EMTSNSSQGSSTIILQFELNRDINGAARDVQAAINAARSLLPSAMASLPTYHKANPSDAP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++    +        E       +    +G  +           L  +  +  P +L   
Sbjct: 139 IVM-LALTSATRSPGELYDLAESKIEQAMGQIKGVGDVSLMGSALPAVRIDLQPLKLIHA 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +         +                    ++                     
Sbjct: 198 GISLDTVRSAVANSTTTLPKGSLQGSSQSWMVDGNGQLDKAA------------------ 239

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                ++                ++   +        L A          +A  +   TI
Sbjct: 240 --SYRNLIISNKDGNVVRLGDVASVYDSVEDRYQAGFLNAQPAVMVGIKRQAGANMLDTI 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        L           V          S    + T  I   LV+ V+F+ +   +
Sbjct: 298 DAIKARLPALEKDLPADTQLKVVVDRSPGVRASLYDTEETLLIAVLLVIAVVFVFLRNLQ 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             ++   ++ +++I T A++ LLG +L   S+  +++  G  VD  I+V E I       
Sbjct: 358 AVIIPALALPVSLIGTCAVMYLLGYSLDNLSLMALIIATGFVVDDAIVVLENITRHIEAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
           Q    +   G      T+    ++ +   + +   G   G   R FAIT+ +S++ISMF 
Sbjct: 418 QRPLRAAIRGAREVSFTVLSMTVSLIAVFIPILLMGSLLGRLFREFAITLTVSLVISMFV 477

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
           ++S+   +   +++ K   S   +PL ++       A+         V  
Sbjct: 478 SLSLTPMLCARLLKPKPNVSKRPHPLYQWIENQLNHALAAYSRGLNWVMR 527



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 71/219 (32%), Gaps = 6/219 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             ++ Q           +   +     ++   + ++      P +   L       +I  
Sbjct: 283 VGIKRQAGANMLDTIDAIKARLPALEKDLPADTQLKVVVDRSPGVRASLYDTEETLLIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + + +           +     L + +  T     L G   +  ++ A++   G+ V+D
Sbjct: 343 LLVIAVVFVFLRNLQAVIIPALALPVSLIGTCAVMYLLGYSLDNLSLMALIIATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +             +   E     +  +++     +P+ + G   G +
Sbjct: 403 AIVVLENI---TRHIEAGQRPLRAAIRGAREVSFTVLSMTVSLIAVFIPILLMGSLLGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              FAI +   +V++   S+ +   +   +   +   ++
Sbjct: 460 FREFAITLTVSLVISMFVSLSLTPMLCARLLKPKPNVSK 498



 Score = 41.6 bits (95), Expect = 0.64,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
                  +S +  I ++        + T++AAF   LP+A+  G    +     I +A G+
Sbjct: 937  AERRLGLSPQQAITQACLMRFRPIMMTTLAAFFGALPLALGSGGDADLRSPLGIAIAGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
             ++   ++F    I L++        R
Sbjct: 997  ALSQLLTLFTTPVIYLWLDRLSRATQR 1023


>gi|163854841|ref|YP_001629139.1| AcrB/AcrD/AcrF family protein [Bordetella petrii DSM 12804]
 gi|163258569|emb|CAP40868.1| AcrB/AcrD/AcrF family protein [Bordetella petrii]
          Length = 1029

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 57/550 (10%), Positives = 148/550 (26%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G +           +   P                    +     
Sbjct: 10  RPVATTLSMVAILIAGFIA-----YRLLPVSALPEVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PDVMTSLVTSPLERQFGQMPGLNQMSSTSSGGASVITLQFSLDLSLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + VL+   I        +    +  +   ++        
Sbjct: 116 SNLLPSDLPVPPIYNKVNPADAPVLT-LAISSPTMPLPQVRDLVDTRMAQKLSQVPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     + A +    V  N ++            +      
Sbjct: 175 VGVAGGQRPAVRIQVNPRALAAAGMSLADLRTAVVGANVNQPKGNLDGPERSTTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                      D+                   +    V     
Sbjct: 235 LKSPTD--------------------YNDLIIAYRNNAPLRLSDVATAVQGAEDVRQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    +    +A         +          S S  
Sbjct: 275 AGGQPAILLNVQRQPGANVIDVVDRIRAMLPQAQAALPATLDVSIVSDRTQTIRASVSDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +       +    + L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QFEMMLAVALVVMVTFLFLRSLTATFIPSVVVPLSLVGTFGIMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G ++   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMIENIARHLEQGETPMQAALKGAAQIGFTLISLTFSLIAVLIPLLFMTE 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   ++R +  +       +    I   IA
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLRPESEQRHGRFHQATGAFIDRTIA 514

Query: 540 IQFMRARFWG 549
                 ++  
Sbjct: 515 HYDRMLQWVL 524



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 72/229 (31%), Gaps = 10/229 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               ++Q  +   Q         + L  Q         V++ ++  + +           
Sbjct: 258 DVATAVQGAEDVRQAAWAGGQPAILLNVQRQPGANVIDVVDRIRAMLPQAQAALPATLDV 317

Query: 656 IVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
            +    ++ +           ++  A+ +++                 + L +  T G  
Sbjct: 318 SIVSDRTQTIRASVSDVQFEMMLAVALVVMVTFLFLRSLTATFIPSVVVPLSLVGTFGIM 377

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   N   + A+    G+ V+D +V+ + +    +      +      K   +    
Sbjct: 378 YLAGFSINNLTLMALTIATGFVVDDAIVMIENI---ARHLEQGETPMQAALKGAAQIGFT 434

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +  + +    ++P+       G +   FAI +A  I+++   S+ +  
Sbjct: 435 LISLTFSLIAVLIPLLFMTEVVGRLFREFAITLAVAILISLVVSLTLTP 483



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 90/223 (40%), Gaps = 7/223 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  +  + +      + +  ++ + +    I   ++I+          +  +   +  +
Sbjct: 802  DQFPMTTVSFNLAPGASLSAAVDAIAEAEAGIGMPASIETRYQGAALAFQNSLSSTLWLI 861

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + I M I + + ++ +   +  ++TL       L    + G E ++  +  ++ LIG 
Sbjct: 862  LAAVITMYIVLGVLYESYIHPVTILSTLPSAAVGALLALMISGTELDMIGIIGIILLIGI 921

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D   +        ++ R  I ++        + T++AA    LP+ +    
Sbjct: 922  VKKNAIMMIDFALE--AERKRGLAPRAAIHEAALLRFRPILMTTLAALFGALPLMLSTGT 979

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     + M  G++++   ++F   P++  ++D  A+  R
Sbjct: 980  GAELRQPLGLVMVGGLLLSQVLTLF-TTPVIYLMFDRLARRGR 1021


>gi|91787549|ref|YP_548501.1| acriflavin resistance protein [Polaromonas sp. JS666]
 gi|91696774|gb|ABE43603.1| acriflavin resistance protein [Polaromonas sp. JS666]
          Length = 1095

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/581 (8%), Positives = 154/581 (26%), Gaps = 58/581 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N  +  ++   I  +GL         +  +D+FP+      +                
Sbjct: 8   LKNPVFATMVMLAIVVLGLFS-----YQRMQVDQFPNIDFPVVV---------VTADYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + +           + Q  + + F         A+ V   + 
Sbjct: 54  ASPEIVESEVTKKIEEGVNSIAGINALTSRSFEGQAIVIIEFQLYVDGRKAAEDVREKIA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQN---------------------NIDQVISHA 159
            +      + K+  ++       +I                                 +A
Sbjct: 114 AIRPSFRDEVKEPRVLRFDPASRAIWSIAVLPAAPKATGERGSATPKAPEATGAGASMNA 173

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           ++ +    +    ++                 ++    +P  +  L  T  ++       
Sbjct: 174 VDLTNWADQVLKKRLENVRGAGSVTLVGGTKREINVYLNPQAMESLGVTADQVVNAVRSE 233

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
           N                      ++   +                      +I     G 
Sbjct: 234 NQDLPVGAIRSLAQERVVKIDARMKRPEDFG--------------------NIIVVRKGG 273

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
                     I      +    +                 +    ++        ++   
Sbjct: 274 APVTVGQVARIADGAQELDSLALYNGQRTLLLTVQKAQDENTIAVVDGLNKAIREMQPLL 333

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
            P     +          +    + T    A L ++++F+ +   +  ++   ++ +++I
Sbjct: 334 PPGARLELITDGSRPIRVAVENVRRTLTEGALLTVLIVFLFLNSWRSTVITGLTLPISII 393

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
            T   +++ G T+ + ++  + L +GL +D  I+V E I    +  ++ + +   G    
Sbjct: 394 GTFLFMNMFGFTINMITLMALSLCVGLLIDDAIVVRENIVRHVQMGKAPYHAAMDGTQEI 453

Query: 460 YSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
              +  +  + +   + + F G   G     F +T+  ++LISMF + ++   +      
Sbjct: 454 GLAVLATTFSIVAVFLPIGFMGGIIGKFFHEFGVTIVAAVLISMFVSFTLDPMLSSIWHD 513

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
                         ++         +       +  S    
Sbjct: 514 PSIEAHGRHRAPVTWYDKTIGRVTGWFDHATDSLSNSYQAI 554



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 88/258 (34%), Gaps = 9/258 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +  G I +      PV +  V    +  Q  D            L   + Q  +++A  
Sbjct: 260 PEDFGNIIVVRKGGAPVTVGQVARIADGAQELDSLALYNGQRTLLLTVQKAQDENTIAVV 319

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWY 691
             L    +++  ++P          G +  R  +      +   + + +LI       W 
Sbjct: 320 DGLNKAIREMQPLLPPGARLELITDGSRPIRVAVENVRRTLTEGALLTVLIVFLFLNSWR 379

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +    TL + I  T  F  +FG   N+  + A+   +G  ++D +VV    R+N+  +
Sbjct: 380 STVITGLTLPISIIGTFLFMNMFGFTINMITLMALSLCVGLLIDDAIVV----RENIVRH 435

Query: 752 TT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
                +          E     + T+ +     LP+   GG +      F + +   +++
Sbjct: 436 VQMGKAPYHAAMDGTQEIGLAVLATTFSIVAVFLPIGFMGGIIGKFFHEFGVTIVAAVLI 495

Query: 808 AASSSIFIAAPILLFIYD 825
           +   S  +   +    +D
Sbjct: 496 SMFVSFTLDPMLSSIWHD 513



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 80/216 (37%), Gaps = 11/216 (5%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            + +   V   +K  +  I      +       K   E     +  ++++ + + + +  +
Sbjct: 854  NRSAGEVSNDIKAVLDGIDLPPGYRYQFSGSTKNMAESFGYAVSALVMAIVFIYMILASQ 913

Query: 688  F-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---R 743
            F  +   L  +T+L L +   +    LFG   ++ +V  V+ L+G    + +++ D   R
Sbjct: 914  FKSFLQPLALMTSLPLTLIGVVLALLLFGSTLSMFSVIGVVMLMGLVTKNAILLVDFAIR 973

Query: 744  MR----KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            MR             +   + + ++    L   + T++A    ++P+A     G      
Sbjct: 974  MRQPGTDADGRQVPGLDRSEALLEAARVRLRPILMTTLAMIFGMMPLAFALTEGSEQRAP 1033

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                +  G++ ++  ++ +      ++ D      R
Sbjct: 1034 MGQAVIGGVITSSLLTLVVVPVTYCYLDDLGQWFKR 1069


>gi|319408126|emb|CBI81779.1| AcrB/AcrD/AcrF multidrug efflux protein [Bartonella schoenbuchensis
           R1]
          Length = 1047

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/692 (11%), Positives = 196/692 (28%), Gaps = 54/692 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L +MI   G+   +   + +      P A  K                    
Sbjct: 25  RRPVFTFVLNAMIVIAGISAWMSVDVRELPDVDIPVATIKT--------------TFTGA 70

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  S +             ++++ + F         A  +   +  
Sbjct: 71  SAETIDREITKVIEDAVSRVSGVKTISSGSAFGRSRVEVKFNVGVDLNVAASDIRDAISR 130

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D +  +++       +++        +     + +  +  Q +D +   +   
Sbjct: 131 ITYSLPKDAEPPIIIKADSNAAAMMYLVVTSPTMNID--DLTTVVNDQIVDALSAVDGVG 188

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                +  +     + D ++L     T   +S                            
Sbjct: 189 DVQVDNARVKIFQIDIDQAKLASYGLTVGDISRVLSDMTTDAPVGSLRNSEQALIVRATA 248

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +        + L                                  ++     V     
Sbjct: 249 RLTTPEAFEQVVLKPH------------------------VRLGDVAHVTLSPDVETVIL 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +   V        KAQ +     +    +   L+          +   +      +   
Sbjct: 285 RVNGKVGIGLGIVRKAQSNTLDISKNVRAVVEHLKTVLPSSVHISIPNDDAIFIKSALHE 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I    V++++F+ +   +  L+   SI + +I T+A + L G +L + +  G+V
Sbjct: 345 VEVALVIAVLSVVLIIFLFLGDIRITLIPAVSIPVALIGTIAAIYLAGFSLNILTFLGLV 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G    +  +  + +T +   V + F  
Sbjct: 405 LATGLVVDDAIVVLENIVRWRNMGFGARSAAVLGTQEVFFAVVATTLTLVAVFVPISFLP 464

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
           G      R F   + +S+L+S   A+++   +                K+ + I ++ +S
Sbjct: 465 GQIGGLFREFGFVLAVSVLLSSVVALTLCPMLASRFLKEEKHVEDDEQKEHRLIFLSRMS 524

Query: 530 RFFLIPDCIAIQFMRARFWGVGIS--ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            FF      ++     R W V     I F +C    +         + +G I L V   +
Sbjct: 525 AFFSRGYAHSLHKCLERPWTVVFGSLIFFVLCLGGYVTLKQELTPAEDRGIIFLVVSGPQ 584

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + +  +   ++ ++      ++     N           +     +L     K +    
Sbjct: 585 DISVQYLNEQVQQIEASLKPLRDAGEIVNSYSISGAGGSSNNGFLILLLSSWDKRSRSQQ 644

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                    V            I  + +S I 
Sbjct: 645 EILKDVNAKVRQFPGVFAFAAQISSLGVSGII 676



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 91/255 (35%), Gaps = 11/255 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+    V L  V     S  +  +  +        L  ++    +++  ++ +  V + 
Sbjct: 258 QVVLKPHVRLGDVAHVTLSPDVETVILRVNGKVGIGLGIVRKAQSNTLDISKNVRAVVEH 317

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           +  ++P S   +         +  + +  V ++I+ +++++ I++        L    ++
Sbjct: 318 LKTVLPSSVHISIPNDDAIFIKSALHEVEVALVIAVLSVVLIIFLFLGDIRITLIPAVSI 377

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L G   N+     ++   G  V+D +VV + +   ++        R  
Sbjct: 378 PVALIGTIAAIYLAGFSLNILTFLGLVLATGLVVDDAIVVLENI---VRWRNMGFGARSA 434

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                 E     V T++      +P++      G +   F   +A  +++    S  +A 
Sbjct: 435 AVLGTQEVFFAVVATTLTLVAVFVPISFLPGQIGGLFREFGFVLAVSVLL----SSVVAL 490

Query: 818 PILLFIYDWRAKNAR 832
            +   +     K  +
Sbjct: 491 TLCPMLASRFLKEEK 505



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 94/249 (37%), Gaps = 12/249 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + V LSV+    E      +  +           L        A   V E     ++E  
Sbjct: 793  KYVPLSVITDLHEKAIAPQLKREERMSAVVIGANLAPGVSLGSAYKTVKEAALPLLSEGN 852

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
             +  + +   +G   S  +I  G     I+ + +L+ +  +F+ +      + T+ L + 
Sbjct: 853  YIIPLGDAATLGETSSDLMIVFG-----IAFVIILLILAAQFESFISGFIIMATVPLGVG 907

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              +    L G+  N+ +   ++ LIG    + +++ +      +L     S R+ ++++ 
Sbjct: 908  CAVIAMLLGGVSLNIYSQIGLILLIGIMAKNGILIVEFA---DQLRDQGKSVREAVEEAA 964

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            N  L     T + A +  +P+ +    G     +    +  G+ +A   ++++   + LF
Sbjct: 965  NVRLRPVCMTMICAILGGIPLVLAKGAGAEARVALGWVIVGGLGLATVFTLYVTPVVYLF 1024

Query: 823  IYDWRAKNA 831
            +  +    A
Sbjct: 1025 LGRFIKSKA 1033


>gi|290475730|ref|YP_003468619.1| RND family multidrug transport protein [Xenorhabdus bovienii
           SS-2004]
 gi|289175052|emb|CBJ81855.1| multidrug transport protein (RND family) [Xenorhabdus bovienii
           SS-2004]
          Length = 1056

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 60/557 (10%), Positives = 143/557 (25%), Gaps = 38/557 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMIAILLAGII-----GYRMLPVSALPQVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  S   +     V   +   
Sbjct: 65  PDIMTSVVTAPLERQFGKISGLKQMTSQSSGGASVITLVFQLSLPLDVAEQDVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +L+   +       I+    +  +   +I        
Sbjct: 125 TNLLPNDLPYPPIYSKVNPADPPILT-LAVTSDALPMIQVQDMVETRIAQRISQVGGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +      +  +    +  N S     F       +      
Sbjct: 184 VTLAGGQRPAVRVKFNAQAIAAHGLNSETIRTTIMNANVSSAKGSFDGPTRSVTLTTN-- 241

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                K+     ++                 I +       G  
Sbjct: 242 ------------------DQMKSIDEYRNLIVAYKNGAPIRLRDVATIERGAENTKLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    +   L           +          S    
Sbjct: 284 ANEKPAIVINVQRQPGANVIDTTDNIRAMLPELINSLPKSVNMDILTDRTVTIRASVQDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L+++ T A++   G ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYVFLRNATATLIPSIAVPLSLVGTFAVMYFCGFSVNNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     + +    +   G      TI     + +   + L F G 
Sbjct: 404 AAGFVVDDAIVVIENISRYIERGEKPMAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   +++ +     +    +        IA
Sbjct: 464 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLKAEAEIKHNRFEQASEHFFERIIA 523

Query: 540 IQFMRARFWGVGISILF 556
           I     +       I  
Sbjct: 524 IYGGWLKRVLNHPWITL 540



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 86/270 (31%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  +            N  + +K G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLTTNDQMKSIDEYRNLIVAYKNGAPIRLRDVATIERGAENTKLGAWANEKPAIVI 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +     +            ++  + K +   +              +  EL+    
Sbjct: 293 NVQRQPGANVIDTTDNIRAMLPELINSLPKSVNMDILTDRTVTIRASVQDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 349 --LAIALVVMVIYVFLR-NATATLIPSIAVPLSLVGTFAVMYFCGFSVNNLTLMALTIAA 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 406 GFVVDDAIVVIENI---SRYIERGEKPMAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAITLAVAILISAVVSLTLTP 492



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 82/224 (36%), Gaps = 11/224 (4%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V   +      +    +  VK+    I     I           ++ +   +  ++ + I
Sbjct: 816  VTFSFNVAQEASLEAAVNAVKETERSIGMPKNINTQFQGATLAFQDALGNTLWLILAAVI 875

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            +M I + I ++ +   +  ++TL       L    + G E ++ A+  ++ LIG    + 
Sbjct: 876  SMYIVLGILYESFIHPVTILSTLPTAGVGALLALMVGGYELDIIAIIGIILLIGIVKKNA 935

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ D            +S  D I ++        + T+MAA +  LP+ +    G  + 
Sbjct: 936  IMMID--FALAAEREKGMSPYDAIFQACLLRFRPILMTTMAALLGALPLMLSTGIGAELR 993

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD-----WRAKNARI 833
                I M  G++++   ++F    I L            +  R+
Sbjct: 994  RPLGICMVGGLIMSQILTLFTTPVIYLLFDRLANYFKNKRQNRL 1037


>gi|115522930|ref|YP_779841.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
 gi|115516877|gb|ABJ04861.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
          Length = 1052

 Score =  152 bits (382), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 77/685 (11%), Positives = 179/685 (26%), Gaps = 46/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    V+   ++  +G +      + +      P                   +     
Sbjct: 11  RHPLPSVVFSIILLALGWISFTNLAITRLPNADIPVIS--------------VAVSQFGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ FA     +   + +   +  
Sbjct: 57  APAELEAQVTKTIEDGVSGVEGVRHIASSITDGLSVTTIQFALETNTDRALNDIKDAVTR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  +  + L+       + IV              + S  +       +       
Sbjct: 117 VRSNLPQNVNEPLIQRVDVIGLPIVTYAAISPGKTPE--QLSWFVDDVVKRSLQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL+    T   +S      N    G    +     +     
Sbjct: 175 QVERIGGVEREILVSLDPDRLQAAGLTAVDVSRRLRGTNVDLAGGRAEIGQNDQAIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +++G  +                                   +   +A      
Sbjct: 235 GAKTLNDLAGTMIALPA--------------------GGEIRLDDLGTVTDTIADRRTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +           S              L+A    ++L    + +V    G+   
Sbjct: 275 RVNGEPVVALGIKRSKGASDVVVAAAVQKRIDALKAAYPDVEL-KQIDTSVDYTKGNYEA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  ++A  S+ L++      + +LG +L L S   I 
Sbjct: 334 AISTLFEGAILAVIVVFLFLRDIRATVIAAISLPLSIFPAFWAMDMLGFSLNLVSFLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A   I  + I        + 
Sbjct: 394 LSTGILVDDAIVEIENIVRHMRMGKSPYRAALEAADEIGLAVIAISLTIIAIFAPASFMS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ + +  S+  A  +   +  + ++           + R ++     
Sbjct: 454 GIAGQFFKQFGITVSVQVFFSLLAARFVTPVLAAYFLKDHPHPVKPPGLVLRTYVRLVTW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           ++   R     +    +F+     +                 L +       L+      
Sbjct: 514 SV--HRYYLTVLIGFGIFAASIWSITLLPQGFLPAQDTARSVLAIELPPGSQLAFTEKTT 571

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           E +                  R+     +      ++    K    I       +     
Sbjct: 572 EDIVARLRKRPEVKSVFVDGGRVPPGIFEVRRAALIINYTPKSERNITQRELELSISREM 631

Query: 659 PKI----SRELIRKGIVGVIISAIA 679
             +       L   G+  + +    
Sbjct: 632 ADVPDIRHWFLDENGLRAIALVVTG 656



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 74/249 (29%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + A   + L  + +  +++       +        L   + +    V     ++   
Sbjct: 246 MIALPAGGEIRLDDLGTVTDTIADRRTFARVNGEPVVALGIKRSKGASDVVVAAAVQKRI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P   ++  +                    + +A+++           + A  +
Sbjct: 306 DALKAAYPDVELKQIDTSVDYTKGNYEAAISTLFEGAILAVIVVFLFLRDIRATVIAAIS 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I        + G   NL +  A+    G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSIFPAFWAMDMLGFSLNLVSFLAITLSTGILVDDAIVEIENI---VRHMRMGKSPYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     +  S+           + G  G     F I ++  +  +  ++ F+ 
Sbjct: 423 AALEAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARFVT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PVLAAYFLK 491



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL       +    + +   + + F  +   +  + +L L I   +    + G +    
Sbjct: 839  NELSEGFATAISAGLMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIAALLVTGKQLTTP 898

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
                +L L+G    + +++ +   + ++         + +  +  +     V T++A   
Sbjct: 899  VWIGILMLMGIVTKNAIMLVEFAIEAIRE---GKPREEAMIDAGTKRARPIVMTTIAMVA 955

Query: 782  SVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             ++P A+    GG      A+ +  G++ +   S+     + + + D
Sbjct: 956  GMVPSALAFGAGGEFRSPMALAVIGGLLFSTLLSLIFVPAMFMMMDD 1002


>gi|154248087|ref|YP_001419045.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
 gi|154162172|gb|ABS69388.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
          Length = 1035

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/515 (12%), Positives = 139/515 (26%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G +  L   +       +P+                         
Sbjct: 10  RPVATTLAMVAILLSGAIALLFLPVSALPQVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F  +   +    +V   L   
Sbjct: 56  PDVMTSSVTAPLEVQLGQIPNLAQMASTSSAGASMITLQFNLAVPLDVAEQQVQAALNAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +     +  E       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LALTSKTMNLREIQALADTRLAQKISQLPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    DP RL         +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRVRADPRRLAAHGLNLDDLRSTLANANVNTPKGGFDGPTRASTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                      D+                 +   +        
Sbjct: 235 LQSAAQ--------------------YEDVIVAYRNGAAVRLREVATVVDGVENDKLAGW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   L+A         V          S    
Sbjct: 275 MNDAPAIILNIQRQPGANVINVVDRVKALLPQLQAALPAEIDVAVLTDRTTTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A+   LV++V+F  +   +  L+   S+ L+++ TL ++ L G +L   ++  + +
Sbjct: 335 GYELALAVMLVILVIFAFLRSARATLIPSLSVPLSLVGTLGVMYLFGYSLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     + +S   +   G  +   TI    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVVIENITRYIEEGESPLQAALKGSEQIGFTIISLTVSLIAVMIPLLFMSD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA+T+  +IL+S   ++++V      +
Sbjct: 455 VVGRLFREFAVTLSTTILVSGVVSLTLVPMACAKL 489



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 69/202 (34%), Gaps = 6/202 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q          RV  ++ +    +     +         I   +   G    +   +
Sbjct: 285 IQRQPGANVINVVDRVKALLPQLQAALPAEIDVAVLTDRTTTIRASVRDVGYELALAVML 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +L+           L    ++ L +  TLG   LFG   N   + A+    G+ V+D +
Sbjct: 345 VILVIFAFLRSARATLIPSLSVPLSLVGTLGVMYLFGYSLNNLTLMALTIATGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIG 795
           VV + +    +      S      K   +     +  +++    ++P+       G +  
Sbjct: 405 VVIENI---TRYIEEGESPLQAALKGSEQIGFTIISLTVSLIAVMIPLLFMSDVVGRLFR 461

Query: 796 SFAIPMAFGIVVAASSSIFIAA 817
            FA+ ++  I+V+   S+ +  
Sbjct: 462 EFAVTLSTTILVSGVVSLTLVP 483


>gi|317474025|ref|ZP_07933304.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bacteroides
           eggerthii 1_2_48FAA]
 gi|316909867|gb|EFV31542.1| hydrophobe/amphiphile efflux-1 family RND transporter [Bacteroides
           eggerthii 1_2_48FAA]
          Length = 1036

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/637 (10%), Positives = 170/637 (26%), Gaps = 43/637 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D +       +          +     P +
Sbjct: 135 PSQLMTICLTSSDPKFDEIYLSNFATINVLDLLRRIPGVGRVSNIGSRYYAMQIWAMPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSSAKQFEDIVVRANANGSIIRLRDVARVSLEASSYSTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               +        + A         +          S      T      LV++V+F+ +
Sbjct: 301 MEVADNVKKAMEEISANFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVVLVVFLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE- 440
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENVEHL 420

Query: 441 ENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFFG--GGAVRGFAITMGLSIL 497
              +  S + +     +  A + I  S +   +   V F  G  G   R F IT+ +S+L
Sbjct: 421 METEKLSPYEATKKAMNGLASALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYK-------KMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
           +S   A+++   M   I++           + I+             I+      R    
Sbjct: 481 LSTVVALTLSPVMCSLILKPNSGAKKNIVFRKINEWLSISNHKYIGVISRVIKHPRRLMS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              ++     I           ++ +G  ++ +       L   R   +           
Sbjct: 541 AFGMVLIAIFIIHRLIPTSFLPVEDQGYFKVELELPEGATLERTRIVTDRAVKYLEQNPY 600

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +N          +       + +   +  +   
Sbjct: 601 VAYVQNVTGSSPRVGSNQARSELTVILKPWEDRKNTT 637



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 88/255 (34%), Gaps = 10/255 (3%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K    + V AN    +  +R                         L            V 
Sbjct: 245 KQFEDIVVRANANGSIIRLRDVARVSLEASSYSTESGINGENAAVLGIYMLPGANAMEVA 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWY 691
           + VKK + EI        +  +   ++  +                + +L+       W 
Sbjct: 305 DNVKKAMEEISANFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVVLVVFLSLQSWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +     + 
Sbjct: 365 ATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENV--EHLME 422

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVA 808
           T  +S  +   K++N      + TS+      +P+  + G  G +   F I +A  ++++
Sbjct: 423 TEKLSPYEATKKAMNGLASALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVLLS 482

Query: 809 ASSSIFIAAPILLFI 823
              ++   +P++  +
Sbjct: 483 TVVAL-TLSPVMCSL 496



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +         A+ G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVAVCGLENDIYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDNGGDLVQSAIHAAQLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            + A    I +     + IY  +AK
Sbjct: 1005 IFAIVFGIVLVPFFFVLIYKAKAK 1028


>gi|295111465|emb|CBL28215.1| protein-export membrane protein SecD [Synergistetes bacterium SGP1]
          Length = 467

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 144/518 (27%), Positives = 241/518 (46%), Gaps = 59/518 (11%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +   + +  ++    L  + P                K RI+ GLDLRGG+H+VL+  
Sbjct: 3   RRDRLRLWVVLIVIVAALAYSWP---------------IKGRINQGLDLRGGAHIVLQA- 46

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                    +                                     + +   +   +  
Sbjct: 47  -----KDTPENPV-----------------------------GPDSIDRLLAVLRNRVDQ 72

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                     + ++  + E  I I L      +     I ++ ++  + +  + ++ ST+
Sbjct: 73  Y------GVAEPIIQKSGEDRIIIDLPGIQDPKAALELIGKTAQMDFREV--MDVTASTL 124

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L   Q   R R  +   +  S          +G +       + +  ++
Sbjct: 125 SAPERKNYDSDLQFSQAQERWRAAVEAQSNSSADLAARARGIEGAIVAPSEEEEGEAARF 184

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +SG  L    +    +  +  V +SF   GA+ F E T   +GK +A+VLD  
Sbjct: 185 YLLGKSLLSGKDLET-ASVNPDRLGRMGVSLSFSPEGAKLFEEATARLVGKQIAIVLDNV 243

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V++APV+   I  G+AQI+G FT E A  LA ML+AG+LP+ + I E R+VG  LG+DS+
Sbjct: 244 VISAPVVQDRISGGEAQITGRFTAEEASRLAIMLKAGALPVAVEIAENRSVGPSLGADSV 303

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G  A + G  ++++FM++ Y   GL AD ++ + ++L    L    ATLTLP IAGI+
Sbjct: 304 RQGMQAGLFGAAMVLVFMLIYYRFRGLAADVALVVTILLIFTGLIAFHATLTLPGIAGII 363

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD N+L+ ERIREE R  ++   +LD GF +A  TI DSNIT LIA +VLF FG
Sbjct: 364 LTLGMAVDGNVLIYERIREEVRSGKTPIAALDAGFRKALVTILDSNITTLIAALVLFHFG 423

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            G+VRGF +T+ + ++ S+F  + + RA++   +  ++
Sbjct: 424 SGSVRGFGVTLSIGLVASVFANVVVTRALLQLFVSRRQ 461



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 88/204 (43%), Gaps = 4/204 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A+      +  K   +     I     VGP +  + +R+G+   +  A  +L+++ I +
Sbjct: 266 TAEEASRLAIMLKAGALPVAVEIAENRSVGPSLGADSVRQGMQAGLFGAAMVLVFMLIYY 325

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           ++   L A   L++ I         F     L  +A ++  +G +V+  V++Y+R+R+ +
Sbjct: 326 RFR-GLAADVALVVTILLIFTGLIAFHATLTLPGIAGIILTLGMAVDGNVLIYERIREEV 384

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +   +  +    +D    + L   + +++   I+ L +  +G   +  F + ++ G+V +
Sbjct: 385 R---SGKTPIAALDAGFRKALVTILDSNITTLIAALVLFHFGSGSVRGFGVTLSIGLVAS 441

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
             +++ +   +L      R    +
Sbjct: 442 VFANVVVTRALLQLFVSRRQNALK 465


>gi|123966245|ref|YP_001011326.1| preprotein translocase subunit SecD [Prochlorococcus marinus str.
           MIT 9515]
 gi|123200611|gb|ABM72219.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9515]
          Length = 486

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 131/530 (24%), Positives = 227/530 (42%), Gaps = 68/530 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W   +  ++     +  L NF                 + LGLDL+GGS L L++ 
Sbjct: 3   KRQGWFFFIIFLLTL--SIYLLINF----------------PLQLGLDLKGGSQLTLQLV 44

Query: 62  EDD--FVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLF 118
           ++D       L+  +  L   +   G+   +++   ++++ L     +   + +  +   
Sbjct: 45  KEDGKVTKEELEAVNAVLDKRVNNLGVAESNLQTLGRDQLILELPGEQNPLSASRILGKT 104

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                     +    L                            +++I R +I+ +    
Sbjct: 105 ALLEFRTQKENTISEL---------------------------NNLQIQRIKINDLIDQF 137

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           +   +      L       +  +         ++    V         +           
Sbjct: 138 NIDNKRNVDISLNFYDNLTELEKDINYSSKNQQLFDRLVDTKKFISNEI----------- 186

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL---- 294
               + +K ++SG  L  A    +   +   V +SF   G  +F E+T+   G       
Sbjct: 187 --VNLFNKTDLSGKDLVNAGRRQEQTNNNWEVLLSFSSEGGDKFAEITKSIAGTDQLLSI 244

Query: 295 ---AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                 +    + +  IN  I  G A ISGNF+ E A  L   L+ GSLP+ + IVE   
Sbjct: 245 VLDGESISEASVGSQFINTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNT 304

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +G  LGS +I K   A + GL+ + +FMI  Y   G V+  S+       LAL SL+  T
Sbjct: 305 IGPLLGSKNILKSLYAAICGLMFVGIFMIFNYRILGFVSVISLIFYGFFNLALYSLIPVT 364

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP IAG++L IG+AVD+N+L+ ERIREE     ++  S+D GF RA S+I D +IT L
Sbjct: 365 LTLPGIAGLILSIGMAVDANVLIFERIREELLNGNTLIRSIDSGFLRANSSIIDGHITTL 424

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           ++ +VLFF G   V+GFA T+G+ ++IS+FT+++  + ++ F+  Y+ ++
Sbjct: 425 VSCLVLFFLGTNFVKGFAATLGIGVVISLFTSLNCSKTILRFLTTYQSLR 474



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 99/257 (38%), Gaps = 4/257 (1%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            G     +  +      ++   L+   I + S  +               G+  A+    
Sbjct: 224 GGDKFAEITKSIAGTDQLLSIVLDGESISEASVGSQFINTGITGGSATISGNFSAENARE 283

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
             V+ K   +     I  T  +GP +  + I K +   I   + + I++   ++      
Sbjct: 284 LEVQLKGGSLPLPIEIVETNTIGPLLGSKNILKSLYAAICGLMFVGIFMIFNYRI-LGFV 342

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           ++ +LI      L  ++L  +   L  +A ++  IG +V+  V++++R+R+ +       
Sbjct: 343 SVISLIFYGFFNLALYSLIPVTLTLPGIAGLILSIGMAVDANVLIFERIREELL---NGN 399

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           +    ID          +   +   +S L +   G + +  FA  +  G+V++  +S+  
Sbjct: 400 TLIRSIDSGFLRANSSIIDGHITTLVSCLVLFFLGTNFVKGFAATLGIGVVISLFTSLNC 459

Query: 816 AAPILLFIYDWRAKNAR 832
           +  IL F+  +++   +
Sbjct: 460 SKTILRFLTTYQSLRQK 476


>gi|238758865|ref|ZP_04620038.1| Multidrug resistance protein mdtC [Yersinia aldovae ATCC 35236]
 gi|238702973|gb|EEP95517.1| Multidrug resistance protein mdtC [Yersinia aldovae ATCC 35236]
          Length = 1013

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/584 (12%), Positives = 163/584 (27%), Gaps = 39/584 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +             +   + + +   +    +     +    
Sbjct: 17  GFSLLPVSPLPQVDYPVIM---------VSASMPGADPETMASSVATPLERALGRIAGVN 67

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +      +I L F  SR     A  V   L    S L                 + 
Sbjct: 68  EMTSTSSLGSTRIILQFDLSRDINGAARDVQAALNAAQSLLPTGMPNRPTYRKMNPSDAP 127

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++    +        +       Q   +I  +E           L  +  E +PS L   
Sbjct: 128 IMI-MTLTSDTFTQGQLYDFASTQLAQKIAQTEGVSDVSVGGSSLPAVRVELNPSALFNQ 186

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +       N  +                          S        AN + KT
Sbjct: 187 GVSLDAVRQAISAANVRRPQGS--------------------IDSSEQHWQVQANDEIKT 226

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                NI   +  V +  +         + S +   +   T+
Sbjct: 227 AEGYRPLIIHYNNGSPVRLQDVANIKDSVQDVRNAGMSDGKPAILLVISREPGANIIATV 286

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        LRA         + +        S    + +  I   LV++V+F+ +  G+
Sbjct: 287 DRIRAELPALRASIPASITLNIAQDRSPTIRASLDEVERSLIIAVALVILVVFLFLRSGR 346

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ +++I T   + L G +L   S+  + +  G  VD  I+V E I       
Sbjct: 347 ATLIPAVAVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAG 406

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFT 502
                +   G      T+   +I+ +   + L    G      R FA+T+ ++I IS+  
Sbjct: 407 VKPMAAALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLII 466

Query: 503 AISIVRAMMIFI------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           ++++   M   +       +  +++      L         +       R+    +    
Sbjct: 467 SLTLTPMMCAHLLRAQPAGQQPRIRGFGKVLLVIQQGYGRSLNWVLGHTRWVMAVLLSTI 526

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           ++     +      +     G +   + A++ +    ++  L+ 
Sbjct: 527 ALNVWLYISIPKTFFPEQDTGRMMGFIQADQSISFQAMQQKLKD 570



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 86/241 (35%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V +  +S+Q    +  +       LV  +    + +A    +     
Sbjct: 235 IHYNNGSPVRLQDVANIKDSVQDVRNAGMSDGKPAILLVISREPGANIIATVDRIRAELP 294

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S   N         R  + +    +II+   +++ +++  +     L     
Sbjct: 295 ALRASIPASITLNIAQDRSPTIRASLDEVERSLIIAVALVILVVFLFLRSGRATLIPAVA 354

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +    
Sbjct: 355 VPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPMA 411

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ + 
Sbjct: 412 AALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLIISLTLT 471

Query: 817 A 817
            
Sbjct: 472 P 472



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 95/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     V++ +TE+   ++++ T     ++ +E ++  +  ++ +   
Sbjct: 792  TISFNLPDGGSLSEATAAVERSMTELGVPASVRGTFTGTAQVFQETLKSQLWLIMAAIAT 851

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 852  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 911

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     +S RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 912  MMVDFALDAQRNGN--LSARDAIFQASLLRFRPIMMTTLAALFGALPLLLGSGDGAELRQ 969

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + L+    R++ ++
Sbjct: 970  PLGITIVGGLVMSQLLTLYTTPVVYLYFDRLRSRLSK 1006


>gi|124023325|ref|YP_001017632.1| preprotein translocase subunit SecF [Prochlorococcus marinus str.
           MIT 9303]
 gi|123963611|gb|ABM78367.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9303]
          Length = 359

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 56/186 (30%), Positives = 106/186 (56%), Gaps = 5/186 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           Q+ + +GP +  +L+R  ++ ++++   + IYI +R+   +AL A+  L  D+    G F
Sbjct: 148 QSVDTIGPSLGGQLLRSSLISLLVAFTGIAIYISLRYDRRYALLALVALAHDVIIVCGIF 207

Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A  G+    E +     A+LT+ GYSVND VVV+DR+R+  +   + +   + +D++++ 
Sbjct: 208 AWLGLLITLEVDSLFAVALLTIAGYSVNDTVVVFDRIRERSREDDS-LPLTEQVDRAVSA 266

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           TL R++YTS    + +L + ++GG+ +  FA+ +A G+VV + SSI +A  +L       
Sbjct: 267 TLTRTLYTSGTTLLPLLALILFGGATLYWFAVALALGVVVGSWSSIALAPSLLSLWQGSG 326

Query: 828 AKNARI 833
              A +
Sbjct: 327 PPKAPL 332


>gi|220916815|ref|YP_002492119.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954669|gb|ACL65053.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1047

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 78/630 (12%), Positives = 174/630 (27%), Gaps = 40/630 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V++  +I   GL       + Q                                
Sbjct: 9   RRPVIAVVVNLVIVIAGLQAIRTLNVRQYPRSENAQIT--------------VTTTYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    + + +            +Q  + I      +        ++   +  
Sbjct: 55  NAELVRGFITTPLERVIASADGIDYLESESKQNVSIIRARLRLNYDSNRALAEIGSKIDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  ++   T          +   + +    E +  ++R    ++   E   
Sbjct: 115 VRGDLPPEAEVPVVGIETADSQFASAYLSFSSRFLKQ-NEITDYLVRVVQPRLSSIEGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  + A++       N                 G   
Sbjct: 174 RADILGARTFAMRVWLRPDRMAALNVSPAQVREALARNNYQAA------------VGQTK 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++      +   F          +   E            ++           
Sbjct: 222 GSLVQVNLTANTDLRSVREFQQ--------MVVRERDGATVRLGDVADVALGAEDYDAEV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             T               +    I+        ++         +V          +   
Sbjct: 274 NFTGETAVFVGIWALPDANSLDVIKRVRTEMGAMQTQIPEQIRAVVAYDATAYIQDAIKD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A    +V+IV+F+ +   +  LV   +I ++++  + L+   G TL L ++  IV
Sbjct: 334 VEHTLAETLVIVVIVIFLFLGSLRSVLVPVVAIPVSLVGAVFLMQAFGFTLNLLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +    R+ ++   +   G       +    IT       + F G
Sbjct: 394 LSVGLVVDDAIVVVENVERHLREGKTRMEAALAGVRELVGPVIAMTITLAAVYTPIAFQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
              G   R FA+T+  ++ IS   A+++   M    +    + K +       F  + D 
Sbjct: 454 GLTGSLFREFALTLAGAVTISGVVALTLSPMMSAHLLREGGEAKGLARLLERGFERVRDV 513

Query: 538 IAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            A    ++ +  G   +   +I  +           +       + +        S +  
Sbjct: 514 YARHLEKSLQARGAIYAAWVAIILLVGAMFTMAPRELAPTEDQGVVMGIVNTPSNSTLEQ 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            + + +  + S              Q   G
Sbjct: 574 LVPNTKAVNRSLMEMPEAGFTFQITQPTGG 603



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 87/244 (35%), Gaps = 7/244 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + +       V L  V       +  D           F+        +S+   + +  
Sbjct: 243 QMVVRERDGATVRLGDVADVALGAEDYDAEVNFTGETAVFVGIWALPDANSLDVIKRVRT 302

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGA 696
               +   +P               ++ I+     +  + + ++I I++        L  
Sbjct: 303 EMGAMQTQIPEQIRAVVAYDATAYIQDAIKDVEHTLAETLVIVVIVIFLFLGSLRSVLVP 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           +  + + +   +     FG   NL  + A++  +G  V+D +VV + + ++++   T + 
Sbjct: 363 VVAIPVSLVGAVFLMQAFGFTLNLLTLLAIVLSVGLVVDDAIVVVENVERHLREGKTRM- 421

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
             +     + E +G  +  ++       P+A  G   GS+   FA+ +A  + ++   ++
Sbjct: 422 --EAALAGVRELVGPVIAMTITLAAVYTPIAFQGGLTGSLFREFALTLAGAVTISGVVAL 479

Query: 814 FIAA 817
            ++ 
Sbjct: 480 TLSP 483



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 64/185 (34%), Gaps = 25/185 (13%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI--------- 716
             K +   +++ + + + +  +F  +   L  +   +       G  AL  +         
Sbjct: 842  NKFLPAFLLAIVLIFLVLAAQFNSFRDPLVILAGSVP--LGMFGALALVFLKMPNPQMPF 899

Query: 717  -------EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                     N+ +   ++TL+G    + +++ +      KL    +S  + + ++    L
Sbjct: 900  FTDGWTTTLNVYSQVGLVTLVGLVAKNGILIVEFAN---KLQEQGLSKVEAVRQAAVTRL 956

Query: 770  GRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ A     LP+    G       S  + +  G+ V  + ++     I + I   
Sbjct: 957  RPILMTTFATVFGHLPLTYVTGPGAHARNSIGLVLVAGMTVGTAFTLLFLPSIYVLIARD 1016

Query: 827  RAKNA 831
              K A
Sbjct: 1017 HRKEA 1021


>gi|157736656|ref|YP_001489339.1| protein-export membrane protein SecD [Arcobacter butzleri RM4018]
 gi|157698510|gb|ABV66670.1| protein-export membrane protein SecD [Arcobacter butzleri RM4018]
          Length = 521

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 172/541 (31%), Positives = 292/541 (53%), Gaps = 36/541 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+N  + ++++ +    G+ +++P+                 +ISLGLDL+GG HL+L V
Sbjct: 1   MKNFNYKLVIFLISIIFGIALSIPSLFQTEHG---------KKISLGLDLQGGLHLLLGV 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  + V   ++  +  ++ F   E + +  +    + IT S  D      +   +     
Sbjct: 52  NTHEAVTSKIKSVATSIKYFSDDEELLIDGLTISNDTITFSVLDKDEIPKMDTMLKEI-- 109

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      K L ++ T+ E  I L++ +  +    A+ Q++E IR R+DQ G+SE T
Sbjct: 110 -----------KGLDISITDLEYRIKLTKEDEIKTKDFAVSQAVETIRNRLDQFGLSEPT 158

Query: 181 IQRLGSHRILIQLPGEQDPSR---LRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + R G   I++QLPG +        R+L+   A +    V            S +   +G
Sbjct: 159 VLRQGETDIVVQLPGIKTAEEEKSARELISKPANLELMAVDEDRASQVNSMTSSQAAAYG 218

Query: 230 VRFLRDSDGNQ--YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              L D++ +   YLV++   ++G  +  A  +F  +  +PV+  + +  GAR F + T 
Sbjct: 219 DLILEDTNDSNKKYLVKEIPILNGSQIVDAHVSFSQQN-QPVIGFTLNSAGARIFGDFTA 277

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            N+GK LA+VLDG+V +AP IN+ I  G  QISG FT+  AG +A  L++G+LP  + ++
Sbjct: 278 KNVGKRLAIVLDGKVYSAPNINERIGGGNGQISGGFTVAEAGNVAIALKSGALPATVTLL 337

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E+R+VG  LG+DSI     A+V+G VLI LFMI  Y + GL+A+ ++  N+ + + +++L
Sbjct: 338 EKRSVGPSLGADSIKASMLALVSGTVLIFLFMIAYYRRAGLIANVALVANIFIIIGVIAL 397

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            GATLTLP +AGI+L IG+A+D+N+++NERIRE  R   ++  +++ G+S A   I D+N
Sbjct: 398 FGATLTLPGMAGIILTIGMAIDANVIINERIREVLRMGATIPKAIEDGYSNAMRAIVDAN 457

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           IT L+  VVL+ +G G ++GFA+T+ + IL SM T+I   + +   I+            
Sbjct: 458 ITTLLVAVVLYAYGTGPIKGFAVTIAIGILTSMLTSILGTQGIYQAILPKIVKDKDHKKW 517

Query: 528 L 528
            
Sbjct: 518 F 518



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 77/158 (48%), Gaps = 4/158 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I+  ++ ++   + + +++   ++    L A   L+ +I   +G  ALFG
Sbjct: 341 SVGPSLGADSIKASMLALVSGTVLIFLFMIAYYR-RAGLIANVALVANIFIIIGVIALFG 399

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +++  V++ +R+R+ +++     +    I+   +  +   V  
Sbjct: 400 ATLTLPGMAGIILTIGMAIDANVIINERIREVLRM---GATIPKAIEDGYSNAMRAIVDA 456

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
           ++   +  + +  +G   I  FA+ +A GI+ +  +SI
Sbjct: 457 NITTLLVAVVLYAYGTGPIKGFAVTIAIGILTSMLTSI 494


>gi|27377972|ref|NP_769501.1| RND efflux transporter [Bradyrhizobium japonicum USDA 110]
 gi|27351118|dbj|BAC48126.1| blr2861 [Bradyrhizobium japonicum USDA 110]
          Length = 1031

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/571 (12%), Positives = 164/571 (28%), Gaps = 39/571 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V++  +I  IGL  A+        + ++P  +    I+           V    
Sbjct: 9   KRPVLSVVVSLLILLIGLRAAMV-----LPIRQYPK-LSNTVIN--------ITTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +  +       S     + I +    +        +V      
Sbjct: 55  SADLIQGFITTPIEQAVASAEGVDYITSSSVLGTSTIQVYIKLNFDPNQALTEVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   +  +    ++  TT +  +++    + +++   AI  S  + R     +   +   
Sbjct: 115 VKYLIPKESNDPIVTKTTGQTTAVMYLGFSSEELSGSAI--SDYLTRVVQPVLSTVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++     + A ++      N            +  +     
Sbjct: 173 SADILGGQTFAMRLWLDPVKMAGRNVSPADVAAAIAANNFQSAAGQTKGYLIVSNISTNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D                          +                 +           
Sbjct: 233 GLTD--------------------VNQFRKMIVKAKDGGFVRMEDIATVELAAQSTDASV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                           Q +    ++    L   L     P     V   +      S   
Sbjct: 273 AFNGEHAIFIGVQATPQGNPLTLVKGVRALFPELERNLPPSMKMKVAYDSTKFIQSSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L++I    L+   G +  L ++  +V
Sbjct: 333 VEKTLGEAVIIVIVVIFLFLASLRSVIIPVVTIPLSMIGVCTLMLAFGFSFNLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + ++   +   G       +    IT       + F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHLEEGKTPVQASLQGAREIVGPVVSMTITLAAVYAPIGFLG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  S+++S   A+++   M   +++  +           F  +    
Sbjct: 453 GLTGSLFREFAFTLAGSVIVSGVIALTLSPMMCSVLLKNTEEGRFAKAVNKVFGALTRWY 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGL 569
             +  R+  +     +        + F +  
Sbjct: 513 GRRLDRSLDYKAITGLFAVTILGLVGFLYMH 543



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 61/475 (12%), Positives = 145/475 (30%), Gaps = 27/475 (5%)

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 ++ GL   ++  I  Y K          +    +  L+     T  +       
Sbjct: 16  VVSLLILLIGLRAAMVLPIRQYPKLSNTVINITTVYPGASADLIQGF-ITTPIEQAVASA 74

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS-----------TIFDSNITA 470
            G+     S++L    I+   + N     +L    ++  S            I       
Sbjct: 75  EGVDYITSSSVLGTSTIQVYIKLNFDPNQALTEVLAKTNSVKYLIPKESNDPIVTKTTGQ 134

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
             A + L F     + G AI+  L+ ++    +     A    +        + ++P+  
Sbjct: 135 TTAVMYLGFS-SEELSGSAISDYLTRVVQPVLSTVDGVASADILGGQTFAMRLWLDPVKM 193

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                    +    A       +       I    +         +    +    +    
Sbjct: 194 AGRNVSPADVAAAIAANNFQSAAGQTKGYLIVSNISTNTGLTDVNQFRKMIVKAKDGGFV 253

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKITEI 645
                + +E       +   F+GE    + +Q  P  +          +   +++ +   
Sbjct: 254 RMEDIATVELAAQSTDASVAFNGEHAIFIGVQATPQGNPLTLVKGVRALFPELERNLPPS 313

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
           + +    ++         E+ +     VII  + + +++         +  + T+ L + 
Sbjct: 314 MKMKVAYDSTKFIQSSIDEVEKTLGEAVIIVIVVIFLFLA---SLRSVIIPVVTIPLSMI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                   FG  FNL  + A++  IG  V+D +VV + +    +      +      +  
Sbjct: 371 GVCTLMLAFGFSFNLLTLLAMVLAIGLVVDDAIVVVENIH---RHLEEGKTPVQASLQGA 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            E +G  V  ++       P+   G   GS+   FA  +A  ++V+   ++ ++ 
Sbjct: 428 REIVGPVVSMTITLAAVYAPIGFLGGLTGSLFREFAFTLAGSVIVSGVIALTLSP 482



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 78/251 (31%), Gaps = 12/251 (4%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            GG  +     + + LS V S         ++  N      F            A   +  
Sbjct: 760  GGYYVTTNTGQQLPLSTVVSIRTKTDPNSLTHYNQLNSATFSAVPMPGVTVGAAVDFLEG 819

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
              KK            + + V       +          + I + + +  +F+     L 
Sbjct: 820  EAKKLPQGFSHDYLADSRQYVQEGNQLAIT------FGFALIIIFLVLAAQFESLRDPLV 873

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             + ++ + I   L          N+     +LTL+G      +++ +   +        +
Sbjct: 874  IMISVPMAIVGALIPLFFGMATMNIYTQVGLLTLVGLITKHGILMVEFANE--LQVNERL 931

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
              R  I+ S    L   + T+ A    ++P+      G +   S  + +  G+ +    +
Sbjct: 932  DRRSAIEMSARIRLRPILMTTAAMVTGLIPLLTATGAGAASRFSIGLVVVAGMSIGTLFT 991

Query: 813  IFIAAPILLFI 823
            +F+   + + +
Sbjct: 992  LFVLPAVYVVL 1002


>gi|194428914|ref|ZP_03061448.1| multidrug resistance protein MdtC [Escherichia coli B171]
 gi|194413082|gb|EDX29370.1| multidrug resistance protein MdtC [Escherichia coli B171]
          Length = 1025

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 76/607 (12%), Positives = 169/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RRVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K                   
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALED------------ 222

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G H      N + KT      +                 +   +  V +  +
Sbjct: 223 --------GTHRWQIQTNDELKTADEYQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRSSLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+M+      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRMRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRSSLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|315606298|ref|ZP_07881314.1| AcrB/AcrD family multidrug resistance protein [Prevotella buccae
           ATCC 33574]
 gi|315251989|gb|EFU31962.1| AcrB/AcrD family multidrug resistance protein [Prevotella buccae
           ATCC 33574]
          Length = 1086

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 78/701 (11%), Positives = 187/701 (26%), Gaps = 62/701 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN----RISLGLDLRGGSHLVL 58
                 ++        L++     L    ++++P   P       I  G D +       
Sbjct: 9   RPVLSTVISVF-----LVLLGLIGLVSLPIEQYPDIAPPTISVSTIYQGADAQ------- 56

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADK 114
                      L      L   +   E +   + +   +    IT+ F      +  A  
Sbjct: 57  ---------TVLNSVITPLEESINGVENMTYMTSQATNDGMAMITIYFKQGTNADMAAVN 107

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           V   +    + L  +  +  + T+  +  ++++     +     A   +       +  +
Sbjct: 108 VQNRVSQAQALLPAEVTQVGVTTSKRQTSNVIMYSLTTEDGRYDAEFVTNYNDINIVPAL 167

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                             +     P +++Q     + ++      N             +
Sbjct: 168 KRVTGVGNVQDFSTKTYSMRIWLQPDKMKQYGLIPSDITAALAEQN-------IEAAPGK 220

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             + +    E  +   G               +    I       +         I    
Sbjct: 221 FGEQSNVSFEYVMRYKGR---------LKTPTEYGNIIISTNNNGQTLHLRDVAKIELGG 271

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                G+          +    A  + N   +              P     +       
Sbjct: 272 LSYSVGQKNNNQPSAMGMVQQIAGSNANDIAKGVKAELEKQAKNFPPGLEYKINYDVTEF 331

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S      T  I   LV  V+++ +   +  L+   ++ +++I T   L + G ++ L
Sbjct: 332 LYASIEEVVMTLVITFILVFFVVYIFLQDFRSTLIPLIAVPVSLIGTFLFLWIFGFSINL 391

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALI 472
            +++ ++L I + VD  I+V E +  +       S   ++D     + + I  + + A +
Sbjct: 392 LTLSALLLAIAIVVDDAIVVVEAVHAKLDLGYKSSKTAAIDAMNEISGAIISITLVMAAV 451

Query: 473 ATVVLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDIN 526
              V F  G      R F +TM ++I+IS   A+++  A+              K + + 
Sbjct: 452 FVPVSFISGTSGTFYREFGVTMAVAIVISAINALTLSPALCAIFLKPHDENGHEKKMSMV 511

Query: 527 PLSRFFLIPDCIAI---------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
                        +           +  R       ++     +  + T       D   
Sbjct: 512 DRFHASFNTAFDKVVGKYKKGVENLIGHRIITAVSVVVGIAVLVFTMATTKTGLVPDEDT 571

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           G+    ++  P         +       ++       +  +V   +  G    Q   +  
Sbjct: 572 GVVFVTISLPPATSQAETQKVTDQVDAMLANNPAVQSRQQIVGYNFIAGQGSDQATFIVK 631

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +K                  G  I R  +       ++  I
Sbjct: 632 LKPFDERPSGFFHKLAGLWEGDGIMRFFVDPMANTSVLGMI 672



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/400 (12%), Positives = 115/400 (28%), Gaps = 18/400 (4%)

Query: 449  FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
              +        Y  I +     ++A       G GA  G   +M      S+     + +
Sbjct: 662  PMANTSVLGMIYKQISNIKGAQILAFGPPMISGFGATNGLTFSMQDKTGGSLDKFFKVTK 721

Query: 509  AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
              +  +    ++K+   +    +      + +   +       + +         L+   
Sbjct: 722  DYLKALNERPEIKTAMTSYNPSYPQYMVDVDVAKCKQSGISPRVVLSTLQGYYGGLYASN 781

Query: 569  LN-----YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
             N     Y +  +G     +      ++ V   +         S     G  N      +
Sbjct: 782  FNSYGKLYRVMVQGDAASRMRPGDLTNIYVRTPSGMVPVGEYCSLTRVYGPSNVNRFNLF 841

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR----KGIVGVIISAIA 679
               +  A         + I  +  ++        G   S              +I     
Sbjct: 842  TSININATPADGYSSGEAIKAVEEVAAQTLPAGYGYDFSGLTRSEQESSNTTAIIFVLCI 901

Query: 680  MLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + +Y+ +      +   L  I +L   +     F  LFG + ++    A++ LIG    +
Sbjct: 902  VFVYLILSAQYESYLLPLSVILSLPFGLGGAFIFTQLFGHQNDIYMQIALIMLIGLLAKN 961

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---V 793
             +++ +   +      T ++ +          L   + T MA  I +LPM    G     
Sbjct: 962  AILIVEFALE---RRRTGMAIKYSAILGAASRLRPILMTGMAMVIGLLPMMFASGVGKNG 1018

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              +       G+++     IF+   + +     + K   I
Sbjct: 1019 NQTLGAAAVGGMLIGMMIQIFVVPALFVIFEYLQEKFKPI 1058



 Score = 45.1 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 93/260 (35%), Gaps = 13/260 (5%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                 + +  N       +R   +    G                   Q         +
Sbjct: 242 PTEYGNIIISTNNNGQTLHLRDVAKIELGGLSYSVGQKNNNQPSAMGMVQQIAGSNANDI 301

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KW 690
            + VK ++ +            +   ++  L   I + ++ ++I+ I +   ++I    +
Sbjct: 302 AKGVKAELEKQAKNFPPGLEYKINYDVTEFLYASIEEVVMTLVITFILVFFVVYIFLQDF 361

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L  +  + + +  T  F  +FG   NL  ++A+L  I   V+D +VV + +   + L
Sbjct: 362 RSTLIPLIAVPVSLIGTFLFLWIFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLDL 421

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVL---PMAVWG--GSVIGSFAIPMAFGI 805
                S +     ++NE  G  +  S+   ++ +      + G  G+    F + MA  I
Sbjct: 422 GYK--SSKTAAIDAMNEISGAII--SITLVMAAVFVPVSFISGTSGTFYREFGVTMAVAI 477

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +++ ++  +      
Sbjct: 478 VISAINALTLSPALCAIFLK 497


>gi|255010521|ref|ZP_05282647.1| putative aminoglycoside efflux pump [Bacteroides fragilis 3_1_12]
 gi|313148327|ref|ZP_07810520.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137094|gb|EFR54454.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 1048

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 70/641 (10%), Positives = 175/641 (27%), Gaps = 43/641 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE-GIG 87
             +D++P   P               + +           +       +   +    G+ 
Sbjct: 31  LPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTPGML 77

Query: 88  VFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                   +     T++F  S   +  A ++   ++   S+L  +  +N +    +    
Sbjct: 78  YMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQAPSQ 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           ++             I  S       +D I       +          +    +P +L  
Sbjct: 138 LMTLTLMSSDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAEPDKLAN 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T   +       N      + G + ++  D     +  +  +S +            
Sbjct: 198 FGLTVQDLQNALKDQNRESAAGVLGQQPVKGLD-VTIPITTQGRLSTVE----------- 245

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +    +       +                +    
Sbjct: 246 --QFENIVIRANTNGSIIRLRDVARVSLEASSYSTESGINGKNAAVLGIYMLPGANAMEV 303

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            ++       +           V          S      T      LV++V+++ +   
Sbjct: 304 AKSVKEAMDEISKNFPEGLSYEVPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSLQSW 363

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +     +
Sbjct: 364 RATLIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENVERIMEE 423

Query: 445 NQ-SVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFFG--GGAVRGFAITMGLSILISM 500
            + S + +     +  A + I  S +   +   V F  G  G   R F IT+ +S+LIS 
Sbjct: 424 EKLSPYEATKKAMNGLAGALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVLIST 483

Query: 501 FTAISIVRAMMIFI-------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
             A+++   M   I        +    + I+             I       R    G  
Sbjct: 484 VVALTLSPVMCSLILKPDNGKKKNIVFRKINHWLNVGNHKYVVAIRRVIGNPRRVLAGFG 543

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           ++     +           ++ +G  ++ +       L   R   +              
Sbjct: 544 VVLIGILLIHRLIPTSFLPVEDQGYFKIELELPEGATLERTREVTDRAITYLEKNPYIAY 603

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +N          +       + +   +  +   +  I   
Sbjct: 604 VQNVTGSSPRVGSNQARSELTVILKPWEDRKNTSIDEIMTN 644



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 95/267 (35%), Gaps = 16/267 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +    + + AN    +  +R                         L            V 
Sbjct: 245 EQFENIVIRANTNGSIIRLRDVARVSLEASSYSTESGINGKNAAVLGIYMLPGANAMEVA 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF-KWY 691
           + VK+ + EI        +  V   ++  +          +  + + +++ +++    W 
Sbjct: 305 KSVKEAMDEISKNFPEGLSYEVPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSLQSWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNM 748
             L  I  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV    +R+ +  
Sbjct: 365 ATLIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENVERIMEE- 423

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
                 +S  +   K++N   G  + TS+      +P+  + G  G +   F I +A  +
Sbjct: 424 ----EKLSPYEATKKAMNGLAGALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           +++   ++   +P++  +        +
Sbjct: 480 LISTVVAL-TLSPVMCSLILKPDNGKK 505



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVWICGLENDVYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDRGGDLVQSAIHAAQLRFRPILMTSLAFVLGMLPMVLATGPGSASRAAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            + A    I +     + +Y  +AK
Sbjct: 1005 IFAIVVGIILVPFFFVLVYKTKAK 1028


>gi|150002843|ref|YP_001297587.1| AcrB/AcrD family multidrug resistance protein [Bacteroides vulgatus
           ATCC 8482]
 gi|149931267|gb|ABR37965.1| AcrB/AcrD family multidrug resistance protein [Bacteroides vulgatus
           ATCC 8482]
          Length = 1072

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 78/622 (12%), Positives = 165/622 (26%), Gaps = 56/622 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    + ++P   P                      
Sbjct: 9   RPVLSTVISVLIVILGII-----GLATLPVTQYPDIAPPTVQ---------VRATYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
              V   L      L   +        I   +       I + F      +  A  V   
Sbjct: 55  STAV---LNSVIAPLEDQINGVENMMYIQSSASNNGAADINVYFNQGTDPDMAAVNVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +      L  +  K  + T   +   +++     +    +            I +I   +
Sbjct: 112 VSMAQGLLPAEVTKVGVTTQKRQNSMLMVFSLYDETDSYNIEFIENYANINLIPEIKRVK 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +     P  + Q       +S      N       FG    R +  
Sbjct: 172 GVGDANVLG-QDYSMRIWLKPDVMAQYKLVPTDVSAALAEQNIEAAPGQFGE---RGNQT 227

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            QY +  K  +              +T +    +                +I        
Sbjct: 228 FQYTIRYKGRL-------------QQTTEFEDIVIKALPDGNVLRLGDVADIELGRLAYT 274

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              ++        I    A  +   TI     + A  +          + +        S
Sbjct: 275 FNNMVNGHKAVSCIVYQMAGSNATETISDLEKVLAKAQESLPTGLNINIAQNANDFLFAS 334

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV IV+++ +   +  L+   +I + ++ T  +L L+G ++ L +++
Sbjct: 335 IHEVIKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALVATFFVLKLIGFSVNLLTLS 394

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   + +
Sbjct: 395 AMVLAIAIVVDDAIVVVEGVHAKLDQGYKSSREASIDAMSELGGAIVSITLVMMSVFIPV 454

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------------KKM 520
            F G   G   R F ITM +SI  S   A+++  A+    ++               +  
Sbjct: 455 SFMGGTAGTFYRQFGITMAISIGFSALNALTLSPALCAIFLKPHDEGHGAKKMTRVERFH 514

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
            + +    S        +     +       ++    +    +  T       +  G I 
Sbjct: 515 TAFNAAYDSILKKYKKHVVFFIHKKWLSFGLVAASIILLVFFMKVTPTGMVPNEDTGTIM 574

Query: 581 LGVLANRPVDLSVVRSNLESLQ 602
             V              L  + 
Sbjct: 575 GAVTLPPGTSQERAMEILNRVD 596



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 60/452 (13%), Positives = 121/452 (26%), Gaps = 39/452 (8%)

Query: 413  TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            T+ S  G + G G +  S I+  +   E +    S    +   F RA   I D+    ++
Sbjct: 609  TVISGFGFIGGQGPSYGSIIIKLKDWEERSMMQNSDI-VVGTLFMRAQKIIKDAQ---VL 664

Query: 473  ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
                    G  A     + M       +     +V   M  +    ++ S        F 
Sbjct: 665  FFAPPMIPGYSASSDIELNMQDKTGGDLNHFYDVVLDYMDALKARPEINSAQTTFNPSFP 724

Query: 533  LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                 I     +         +         L+    N        + +        +L 
Sbjct: 725  QYMLDIDAAACKKAGISPSDILTTMQGYFGGLYASNFNR-FGKMYRVMIQAEPEATKNLE 783

Query: 593  VVRSNLESLQIGDISFQNFDGEK-----------NFLVRLQYQPGDSVAQTRVLEMVKKK 641
             + S              F   K           N    ++     +   T    +    
Sbjct: 784  SLNSIKIRNGNEMAPISQFVSVKKVYGPDVIGRFNLYTSIKVMVAPASGYTSGQALQAIA 843

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAIT 698
                  L T    E+ G             G+I     + +Y+ +      +   L  + 
Sbjct: 844  EVAKENLPTGYGYELGGMAREEASTSGSSTGIIFILCFVFVYLLLSAQYESYILPLSVLL 903

Query: 699  T----LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRM 744
            +    L+       GF AL  I      +           A++ L+G    + +++ +  
Sbjct: 904  SVPFGLLGSFLFVNGFAALGNIPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFA 963

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPM 801
               +      +S            L   + TS+A  + ++P+ +  G             
Sbjct: 964  ---LDRRKQGMSISWAAVLGAAARLRPILMTSLAMIVGLIPLMLAMGVGAHGNRTLGASA 1020

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              G+++     IFI   + +     + K   I
Sbjct: 1021 IGGMLIGMIFQIFIVPVLFVVFQWLQEKFKPI 1052



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 6/211 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      LE V  K  E +P     N            I + I  +I + I
Sbjct: 288 IVYQMAGSNATETISDLEKVLAKAQESLPTGLNINIAQNANDFLFASIHEVIKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYIFLQDMRSTLIPAIAIPVALVATFFVLKLIGFSVNLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R+    +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SSREASIDAMSELGGAIVSITLVMMSVFIPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F I MA  I  +A +++ ++  +      
Sbjct: 466 RQFGITMAISIGFSALNALTLSPALCAIFLK 496


>gi|327396286|dbj|BAK13708.1| multidrug resistance protein MdtC [Pantoea ananatis AJ13355]
          Length = 1033

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 67/530 (12%), Positives = 145/530 (27%), Gaps = 33/530 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +          +  L     + +   +    +     +    
Sbjct: 28  GYRLLPVAPLPQVDFPTIM---------VNASLAGASPETMAATVATPLERSLGQIAGIT 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +  Q  + I L F  +R     A  V   +    S L                 + 
Sbjct: 79  EMTSNSSQGSSTIILQFELNRDINGAARDVQAAINAARSLLPSAMASLPTYHKANPSDAP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++    +        E       +    +G  +           L  +  +  P +L   
Sbjct: 139 IVM-LALTSATRSPGELYDLAESKIEQAMGQIKGVGDVSLMGSALPAVRIDLQPLKLIHA 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +         +                    ++                     
Sbjct: 198 GISLDTVRSAVANSTTTLPKGSLQGSSQSWMVDGNGQLDKAA------------------ 239

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                ++                ++   +        L A          +A  +   TI
Sbjct: 240 --SYRNLIISNKDGNVVRLGDVASVYDSVEDRYQAGFLNAQPAVMVGIKRQAGANMLDTI 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        L           V          S    + T  I   LV+ V+F+ +   +
Sbjct: 298 DAIKARLPALEKDLPADTQLKVVVDRSPGVRASLYDTEETLLIAVLLVIAVVFVFLRNLQ 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             ++   ++ +++I T A++ LLG +L   S+  +++  G  VD  I+V E I       
Sbjct: 358 AVIIPALALPVSLIGTCAVMYLLGYSLDNLSLMALIIATGFVVDDAIVVLENITRHIEAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
           Q    +   G      T+    ++ +   + +   G   G   R FAIT+ +S++ISMF 
Sbjct: 418 QRPLRAAIRGAREVSFTVLSMTVSLIAVFIPILLMGSLLGRLFREFAITLTVSLVISMFV 477

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
           ++S+   +   +++ K   S   +PL ++       A+         V  
Sbjct: 478 SLSLTPMLCARLLKPKPNVSKRPHPLYQWIENQLNHALAAYSRGLNWVMR 527



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 71/219 (32%), Gaps = 6/219 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             ++ Q           +   +     ++   + ++      P +   L       +I  
Sbjct: 283 VGIKRQAGANMLDTIDAIKARLPALEKDLPADTQLKVVVDRSPGVRASLYDTEETLLIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + + +           +     L + +  T     L G   +  ++ A++   G+ V+D
Sbjct: 343 LLVIAVVFVFLRNLQAVIIPALALPVSLIGTCAVMYLLGYSLDNLSLMALIIATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +             +   E     +  +++     +P+ + G   G +
Sbjct: 403 AIVVLENI---TRHIEAGQRPLRAAIRGAREVSFTVLSMTVSLIAVFIPILLMGSLLGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              FAI +   +V++   S+ +   +   +   +   ++
Sbjct: 460 FREFAITLTVSLVISMFVSLSLTPMLCARLLKPKPNVSK 498



 Score = 41.6 bits (95), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
                  +S +  I ++        + T++AAF   LP+A+  G    +     I +A G+
Sbjct: 937  AERRLGLSPQQAITQACLMRFRPIMMTTLAAFFGALPLALGSGGDADLRSPLGIAIAGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
             ++   ++F    I L++        R
Sbjct: 997  ALSQLLTLFTTPVIYLWLDRLSRATQR 1023


>gi|254884404|ref|ZP_05257114.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           4_3_47FAA]
 gi|319642470|ref|ZP_07997121.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           3_1_40A]
 gi|254837197|gb|EET17506.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           4_3_47FAA]
 gi|317385926|gb|EFV66854.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           3_1_40A]
          Length = 1072

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 78/622 (12%), Positives = 165/622 (26%), Gaps = 56/622 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    + ++P   P                      
Sbjct: 9   RPVLSTVISVLIVILGII-----GLATLPVTQYPDIAPPTVQ---------VRATYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
              V   L      L   +        I   +       I + F      +  A  V   
Sbjct: 55  STAV---LNSVIAPLEDQINGVENMMYIQSSASNNGAADINVYFNQGTDPDMAAVNVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +      L  +  K  + T   +   +++     +    +            I +I   +
Sbjct: 112 VSMAQGLLPAEVTKVGVTTQKRQNSMLMVFSLYDETDSYNIEFIENYANINLIPEIKRVK 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +     P  + Q       +S      N       FG    R +  
Sbjct: 172 GVGDANVLG-QDYSMRIWLKPDVMAQYKLVPTDVSAALAEQNIEAAPGQFGE---RGNQT 227

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            QY +  K  +              +T +    +                +I        
Sbjct: 228 FQYTIRYKGRL-------------QQTTEFEDIVIKALPDGNVLRLGDVADIELGRLAYT 274

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              ++        I    A  +   TI     + A  +          + +        S
Sbjct: 275 FNNMVNGHKAVSCIVYQMAGSNATETISDLEKVLAKAQESLPTGLNINIAQNANDFLFAS 334

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV IV+++ +   +  L+   +I + ++ T  +L L+G ++ L +++
Sbjct: 335 IHEVIKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALVATFFVLKLIGFSVNLLTLS 394

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   + +
Sbjct: 395 AMVLAIAIVVDDAIVVVEGVHAKLDQGYKSSREASIDAMSELGGAIVSITLVMMSVFIPV 454

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------------KKM 520
            F G   G   R F ITM +SI  S   A+++  A+    ++               +  
Sbjct: 455 SFMGGTAGTFYRQFGITMAISIGFSALNALTLSPALCAIFLKPHDEGHGAKKITRVERFH 514

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
            + +    S        +     +       ++    +    +  T       +  G I 
Sbjct: 515 TAFNAAYDSILKKYKKHVVFFIHKKWLSFGLVAASIILLVFFMKVTPTGMVPNEDTGTIM 574

Query: 581 LGVLANRPVDLSVVRSNLESLQ 602
             V              L  + 
Sbjct: 575 GAVTLPPGTSQERAMEILNRVD 596



 Score = 54.3 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/452 (13%), Positives = 121/452 (26%), Gaps = 39/452 (8%)

Query: 413  TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            T+ S  G + G G +  S I+  +   E +    S    +   F RA   I D+    ++
Sbjct: 609  TVISGFGFIGGQGPSYGSIIIKLKDWEERSMMQNSDI-VVGTLFMRAQKIIKDAQ---VL 664

Query: 473  ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
                    G  A     + M       +     +V   M  +    ++ S        F 
Sbjct: 665  FFAPPMIPGYSASSDIELNMQDKTGGDLNHFYDVVLDYMDALKARPEINSAQTTFNPSFP 724

Query: 533  LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                 I     +         +         L+    N        + +        +L 
Sbjct: 725  QYMLDIDAAACKKAGISPSDILTTMQGYFGGLYASNFNR-FGKMYRVMIQAEPEATKNLE 783

Query: 593  VVRSNLESLQIGDISFQNFDGEK-----------NFLVRLQYQPGDSVAQTRVLEMVKKK 641
             + S              F   K           N    ++     +   T    +    
Sbjct: 784  SLNSIKIRNGNEMAPISQFVSVKKVYGPDVIGRFNLYTSIKVMVAPASGYTSGQALQAIA 843

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAIT 698
                  L T    E+ G             G+I     + +Y+ +      +   L  + 
Sbjct: 844  EVAKENLPTGYGYELGGMAREEASTSGSSTGIIFILCFVFVYLLLSAQYESYILPLSVLL 903

Query: 699  T----LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRM 744
            +    L+       GF AL  I      +           A++ L+G    + +++ +  
Sbjct: 904  SVPFGLLGSFLFVNGFAALGNIPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFA 963

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPM 801
               +      +S            L   + TS+A  + ++P+ +  G             
Sbjct: 964  ---LDRRKQGMSISWAAVLGAAARLRPILMTSLAMIVGLIPLMLAMGVGAHGNRTLGASA 1020

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              G+++     IFI   + +     + K   I
Sbjct: 1021 IGGMLIGMIFQIFIVPVLFVVFQWLQEKFKPI 1052



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 6/211 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      LE V  K  E +P     N            I + I  +I + I
Sbjct: 288 IVYQMAGSNATETISDLEKVLAKAQESLPTGLNINIAQNANDFLFASIHEVIKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYIFLQDMRSTLIPAIAIPVALVATFFVLKLIGFSVNLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R+    +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SSREASIDAMSELGGAIVSITLVMMSVFIPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F I MA  I  +A +++ ++  +      
Sbjct: 466 RQFGITMAISIGFSALNALTLSPALCAIFLK 496


>gi|238763584|ref|ZP_04624545.1| Multidrug resistance protein mdtC [Yersinia kristensenii ATCC
           33638]
 gi|238698216|gb|EEP90972.1| Multidrug resistance protein mdtC [Yersinia kristensenii ATCC
           33638]
          Length = 993

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/556 (12%), Positives = 163/556 (29%), Gaps = 30/556 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               +   + + +   +    +     +        +      +I L F  SR     A 
Sbjct: 16  VSASMPGADPETMASSIATPLERALGRIAGVNEMTSTSSLGSTRIILQFDLSRDINGAAR 75

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   L    S L                 + ++    +        +       Q   +
Sbjct: 76  DVQAALNAAQSLLPSGMPNRPTYRKMNPSDAPIMI-MTLTSDTFSQGQLYDFASTQLAQK 134

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I  +E           L  +  E +PS L     +   +       N  +          
Sbjct: 135 IAQTEGVSDVSVGGSSLPAVRVELNPSALFNQGVSLDAVRQAISAANVRRPQGS------ 188

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                           S        AN + KT +    +                N+   
Sbjct: 189 --------------IDSSEQHWQVQANDEIKTAEGYRPLIIHYNNGSAVRLQDVANVVDS 234

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +  V +  +         + S +   +   T++        LRA         + +    
Sbjct: 235 VQDVRNAGMSDGKPAILLVISREPGANIIATVDRIRAELPALRASIPASIQLNIAQDRSP 294

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + +  I   LV++V+F+ +  G+  L+   ++ +++I T A + L   +L 
Sbjct: 295 TIRASLDEVEQSLVIAVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCDFSLN 354

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I+V E I            +   G      T+   +I+ +  
Sbjct: 355 NLSLMALTIATGFVVDDAIVVLENISRHLEAGVKPMVAALRGVREVGFTVLSMSISLVAV 414

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSID 524
            + L    G      R FA+T+ ++I IS+  ++++   M   +       + ++++   
Sbjct: 415 FIPLLLMEGLPGRLFREFAVTLSVAIGISLVISLTLTPMMCAHLLRAQPAGQQQRIRGFG 474

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
              L+        +       R+  V +    ++     +      +     G +   + 
Sbjct: 475 KVLLTIQQSYGRSLNWVLGHTRWVMVVLLSTIALNVWLYISIPKTFFPEQDTGRMMGFIQ 534

Query: 585 ANRPVDLSVVRSNLES 600
           A++ +    ++  L+ 
Sbjct: 535 ADQSISFQAMQQKLKD 550



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 85/241 (35%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +       V L  V + ++S+Q    +  +       LV  +    + +A    +     
Sbjct: 215 IHYNNGSAVRLQDVANVVDSVQDVRNAGMSDGKPAILLVISREPGANIIATVDRIRAELP 274

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S   N         R  + +    ++I+   +++ +++  +     L     
Sbjct: 275 ALRASIPASIQLNIAQDRSPTIRASLDEVEQSLVIAVALVILVVFLFLRSGRATLIPAVA 334

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L     N  ++ A+    G+ V+D +VV + +    +     +    
Sbjct: 335 VPVSLIGTFAAMYLCDFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPMV 391

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ + 
Sbjct: 392 AALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVISLTLT 451

Query: 817 A 817
            
Sbjct: 452 P 452



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            + +   D  + +     V++ +TE+   ST++       ++ +E ++  +  ++ +   
Sbjct: 772 TISFNLPDGGSLSEATAAVERAMTELGVPSTVRGVFAGTAQVFQETLKSQLWLIMAAIAT 831

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 832 VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 891

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
           ++ D      +     +S RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 892 MMVDFALDAQRNGN--LSARDAIFQASLLRFRPIMMTTLAALFGALPLVLGSGDGAELRQ 949

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              I +  G+V++   +++    + L+    R + ++
Sbjct: 950 PLGITIVGGLVMSQLLTLYTTPVVYLYFDRLRTRFSK 986


>gi|237732124|ref|ZP_04562605.1| multidrug efflux system subunit MdtC [Citrobacter sp. 30_2]
 gi|226907663|gb|EEH93581.1| multidrug efflux system subunit MdtC [Citrobacter sp. 30_2]
          Length = 1026

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISVAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFKFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRSAIDNANVRKPQGAVENDTHRWQVQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       I                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPIIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQTLVPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFIFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++    +           L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKSSTPREQSRKRGFGRVLVALQQS 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLRHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 92/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   E + + +T++   ST++ +     ++ ++ +   ++ +I +   
Sbjct: 803  TVSFNLPTGSSLSEATEAINRTMTQLGVPSTVRGSFAGTAQVFQDTMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGMLYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     +   + I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALEAQRNG--KLQPEEAIFQACLLRFRPIMMTTLAALFGALPLVLSAGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+VV+   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVVSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 8/159 (5%)

Query: 673 VIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +IIS   +++ ++I  +     L     + + +  T     L G   N  ++ A+    G
Sbjct: 338 LIISVALVILVVFIFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAV 788
           + V+D +VV + +    +     +       +   E     +  S++        L M  
Sbjct: 398 FVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             G ++  FA+ ++  I ++   S+    P++       
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSL-TLTPMMCGWMLKS 492


>gi|218130518|ref|ZP_03459322.1| hypothetical protein BACEGG_02107 [Bacteroides eggerthii DSM 20697]
 gi|217987304|gb|EEC53634.1| hypothetical protein BACEGG_02107 [Bacteroides eggerthii DSM 20697]
          Length = 1036

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/637 (10%), Positives = 167/637 (26%), Gaps = 43/637 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D +       +          +     P +
Sbjct: 135 PSQLMTICLTSSDPKFDEIYLSNFATINVLDLLRRIPGVGRVSNIGSRYYAMQIWAMPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSSAKQFEDIVVRANANGSIIRLRDVARVSLEASSYSTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               +        + A         +          S      T      LV++V+F+ +
Sbjct: 301 MEVADNVKKAMEEISANFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVVLVVFLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE- 440
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENVEHL 420

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLFFFGGGAVRGFAITMGLSIL 497
              +  S + +     +   S +  ++       +    L    G   R F IT+ +S+L
Sbjct: 421 METEKLSPYEATKKAMNGLASALVATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYK-------KMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
           +S   A+++   M   I++           + I+             I+      R    
Sbjct: 481 LSTVVALTLSPVMCSLILKPNSGAKKNIVFRKINEWLSISNHKYIGVISRVIKHPRRLMS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              ++     I           ++ +G  ++ +       L   R   +           
Sbjct: 541 AFGMVLIAIFIIHRLIPTSFLPVEDQGYFKVELELPEGATLERTRIVTDRAVKYLEQNPY 600

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +N          +       + +   +  +   
Sbjct: 601 VAYVQNVTGSSPRVGSNQARSELTVILKPWEDRKNTT 637



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 88/255 (34%), Gaps = 10/255 (3%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K    + V AN    +  +R                         L            V 
Sbjct: 245 KQFEDIVVRANANGSIIRLRDVARVSLEASSYSTESGINGENAAVLGIYMLPGANAMEVA 304

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWY 691
           + VKK + EI        +  +   ++  +                + +L+       W 
Sbjct: 305 DNVKKAMEEISANFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVVLVVFLSLQSWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +     + 
Sbjct: 365 ATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENV--EHLME 422

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVA 808
           T  +S  +   K++N      V TS+      +P+  + G  G +   F I +A  ++++
Sbjct: 423 TEKLSPYEATKKAMNGLASALVATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVLLS 482

Query: 809 ASSSIFIAAPILLFI 823
              ++   +P++  +
Sbjct: 483 TVVAL-TLSPVMCSL 496



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +         A+ G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVAVCGLENDIYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDNGGDLVQSAIHAAQLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            + A    I +     + IY  +AK
Sbjct: 1005 IFAIVFGIVLVPFFFVLIYKAKAK 1028


>gi|302866776|ref|YP_003835413.1| protein-export membrane protein SecF [Micromonospora aurantiaca
           ATCC 27029]
 gi|315503191|ref|YP_004082078.1| protein-export membrane protein secf [Micromonospora sp. L5]
 gi|302569635|gb|ADL45837.1| protein-export membrane protein SecF [Micromonospora aurantiaca
           ATCC 27029]
 gi|315409810|gb|ADU07927.1| protein-export membrane protein SecF [Micromonospora sp. L5]
          Length = 395

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 121/279 (43%), Gaps = 9/279 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R    G++ +  + ++      G   GI+F GG    V A+        R+  + L  
Sbjct: 21  GRRKLWFGVAGVLVLIAVLSFAISGFKLGIEFAGGNSFQVPASVGTLDQAERTVDDVLAD 80

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVA--QTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                +    +K      ++    +      +          E    +   +   V    
Sbjct: 81  EAPGVEVVSAQKVGGTSGEFYEMRTGQLSAEQANAAKTAMAQEFGIPADQISGSQVSEAW 140

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             ++  +  +G++I    + IY+ +RF+W  A  AI +L+ ++  T G ++L G E   +
Sbjct: 141 GSQVTSRAFLGLVIFIAVVSIYLVLRFEWRMAAAAIVSLLTNLALTAGIYSLVGFEVTPS 200

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSVYTSMAA 779
            +   LT++G+++ D VVV+D++++N +  T   ++++ +  + ++N++L RS+ TS+ A
Sbjct: 201 TIIGFLTILGFALYDVVVVFDKVQENTRGITANNNVTYGEASNLALNQSLMRSLNTSVVA 260

Query: 780 FISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSI 813
            + V  +        G   +    + +  G+ VA  +SI
Sbjct: 261 LLPVGGLLFIGAGLLGAGTLKDLGLVLFVGMAVAFLTSI 299


>gi|296447590|ref|ZP_06889511.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
 gi|296254905|gb|EFH02011.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
          Length = 1040

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/520 (11%), Positives = 145/520 (27%), Gaps = 38/520 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G++      L       +P+                         
Sbjct: 10  RPIATSLLMVALTLAGVVAYGLLPLSALPNVDYPTIQ--------------VQTFFPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +   G    +     + ITL F++    +    +V   +   
Sbjct: 56  PEVMTSAVTAPLERQLGQMPGLGQMTSTSSAGASVITLQFSEKLSLDIAEQEVQAAIDAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L        +        + +++   I        E +     +   +I        
Sbjct: 116 SNLLPSGLPTPPIYAKFNPGDAPIMT-LAITSQTRPLTELANLAETRLAQKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + DP  L         +       N +     F       +      
Sbjct: 175 VGVSGSQRPAVRIQFDPRTLAGYRLHIDDLRTTIANANVNGPKGSFDGPMRASTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D  +   + +                         R    +   ++            
Sbjct: 235 LTDLEDFRNLVIA--------------------YRDGRPVRLLDVAHVVLGPENDKLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +E    L   L A         +          S +  
Sbjct: 275 ADRTPAIILNIQRQPGANVIAVVEAIRSLLPTLEAALPSAIDVRILSDRTTTIRASLAEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+F+ +      ++   S+ L+++   A + LLG +L   S+  + +
Sbjct: 335 ELELALAVALVILVIFLFLRNLPATIIPGLSVPLSIVGAFAAMYLLGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      TI    ++ + A + L F   
Sbjct: 395 STGFVVDDAIVVIENITRHVEAGERPLRAALRGSREIGFTIVSLTLSLIAALIPLLFMDG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
             G     FA+T+ ++I IS   ++++V  +   ++R++ 
Sbjct: 455 VVGRLFHEFAVTLAVTISISALVSLTLVPMLCARLLRHRP 494



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 64/160 (40%), Gaps = 7/160 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + ++I++++R      +    ++ L I        L G   +  ++ A+    
Sbjct: 338 LALAVALVILVIFLFLR-NLPATIIPGLSVPLSIVGAFAAMYLLGFSLDNLSLMALTIST 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             +   E     V  +++   +++P+    
Sbjct: 397 GFVVDDAIVVIENI---TRHVEAGERPLRAALRGSREIGFTIVSLTLSLIAALIPLLFMD 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G V      FA+ +A  I ++A  S+ +   +   +   R
Sbjct: 454 GVVGRLFHEFAVTLAVTISISALVSLTLVPMLCARLLRHR 493



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 85/214 (39%), Gaps = 6/214 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      +    +  +++   +I    +            R    K I+ ++ + + 
Sbjct: 812  TISFDIARGSSLGAAIAAIERAEQDIGLPRSFVTNFQGAAGAFRASATKEILLILAAVVT 871

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   +  ++TL       L   A  G E +L A+  ++ LIG    + +
Sbjct: 872  IYIVLGVLYESFIHPITILSTLPSAGLGALLALAATGGELDLIAIIGLVLLIGIVKKNAI 931

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            +V D         +  +S R+ I  +        + T+MAA +  LP+ +    G  +  
Sbjct: 932  MVVD--FAIDARRSRGLSAREAIFDACLSRFRPILMTTMAAILGALPLMIDTGVGFELRR 989

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               + +  G++++ + ++F    I L++    A+
Sbjct: 990  PLGVAIIGGLLLSQAMTLFTTPVIYLYLDRLEAR 1023


>gi|26988790|ref|NP_744215.1| acriflavin resistance protein [Pseudomonas putida KT2440]
 gi|24983588|gb|AAN67679.1|AE016398_3 multidrug efflux RND transporter [Pseudomonas putida KT2440]
          Length = 1027

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 65/525 (12%), Positives = 158/525 (30%), Gaps = 47/525 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ S+I  +GL       + +  + ++P             L   S + +  +
Sbjct: 9   RRPVLALVVSSLIILMGLFA-----MGKLPIRQYP-------------LLESSTITISTE 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  S ++       S +Q ++ ITL    +R       +   
Sbjct: 51  YPGASAELMQGFVTQPITQAVSSVEGIDYLSSSSQQGRSLITLRMVLNRDSTQALAETMA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  +L       ++  +     ++       D +     E S  + R    Q    
Sbjct: 111 KVNQVRYRLPEKAYDPVVELSAGDSTAVAYVGFASDSL--SIPELSDYLSRVVEPQFSGI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +        + +    D  ++     T A ++      N          +++    
Sbjct: 169 DGVAKVQSFGGQRLAMRLWLDSEQMAGRGVTAADVAQAVRANNYQATPGQVRGQYVLADI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    +                      ++     G           +    A  
Sbjct: 229 QVDTDLTRVEDF--------------------RELIIRNDGTDLVRLRDIGTVELSAAAT 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +    +E    L   ++    P     +          
Sbjct: 269 QTSATMDGKPAVHLGLFPTPSGNPLVIVEGIRQLLPQIQQTLPPGVYVALAYETARFIDA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V++V+++ +   +  L+A  +I L+++    L+ + G +L L ++
Sbjct: 329 SIHEVLRTLVEAMLIVVLVIWLCLGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +     + +S   +   G       +    +T       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENVHRHIEEGKSPIAAALAGAREIAGPVIAMTLTLAAVYAPI 448

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
              G   G   R FA+T+  ++++S   A+++   M   +++  +
Sbjct: 449 GLMGGLTGTLFREFALTLAGAVIVSGIVALTLSPVMSSLLLQPGQ 493



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 93/270 (34%), Gaps = 8/270 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              +  +        ++    + +       V L  + +   S      S          
Sbjct: 222 QYVLADIQVDTDLTRVEDFRELIIRNDGTDLVRLRDIGTVELSAAATQTSATMDGKPAVH 281

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L       G+ +     +  +  +I + +P            +     I + +  ++ + 
Sbjct: 282 LGLFPTPSGNPLVIVEGIRQLLPQIQQTLPPGVYVALAYETARFIDASIHEVLRTLVEAM 341

Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           + +++ IW+        L A+  + L +    G   +FG   NL  + A++  IG  V+D
Sbjct: 342 LIVVLVIWLCLGSLRSVLIAVVAIPLSMLGAAGLMLMFGFSLNLLTLLAMVLAIGLVVDD 401

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +      S          E  G  +  ++       P+ + G   G++
Sbjct: 402 AIVVVENVH---RHIEEGKSPIAAALAGAREIAGPVIAMTLTLAAVYAPIGLMGGLTGTL 458

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              FA+ +A  ++V+   ++   +P++  +
Sbjct: 459 FREFALTLAGAVIVSGIVAL-TLSPVMSSL 487



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 80/247 (32%), Gaps = 10/247 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     + +       +++       FD +    ++    PG S+             
Sbjct: 765  VRAEDGSLVPLATLVRLDIEVAPNRLLQFDQQNASTLQAIPAPGVSMGNAVAFLEQLTAE 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L    +   + + + + + +  +++     L  + T+ 
Sbjct: 825  LPPGFSHDWQSESRQYVQEGFAL----MWAFLAALVVIYLVLAAQYESLVDPLIILVTVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     N+     ++TLIG      +++     +       ++     I
Sbjct: 881  LSICGALLPLALGWATLNIYTQIGLVTLIGLISKHGILMVAFANE--IQVRDNLDRAAAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + T+ A    VLP+      G +      + +  G++V    ++F+   
Sbjct: 939  VRAAQIRLRPVLMTTAAMTFGVLPLLFASGAGANSRFGLGVVIVCGMLVGTLFTLFVLPT 998

Query: 819  ILLFIYD 825
            I  ++  
Sbjct: 999  IYAWLAR 1005


>gi|33602828|ref|NP_890388.1| integral membrane component of multidrug efflux system [Bordetella
           bronchiseptica RB50]
 gi|33577270|emb|CAE35827.1| integral membrane component of multidrug efflux system [Bordetella
           bronchiseptica RB50]
          Length = 1037

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 74/651 (11%), Positives = 193/651 (29%), Gaps = 41/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  +GL         +  + ++P         L  +            
Sbjct: 9   RRPVLALVVSTLILLLGL-----RATGELPVRQYP---------LTENTTITITTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+     +  + ++       S  Q ++ IT+    +        ++   +  
Sbjct: 55  SPELMQGFVTQPIAQAVATVENIDYLSSSSTQGRSLITVRMKLNADSNKALTEIMAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  +    +L  ++ +  S+     +   +   A   +  + R  + Q+   +   
Sbjct: 115 VKYRLPQEIYDPVLAKSSGEATSVAYVGFSSKTMPIPA--LTDYLQRVVLPQLSSIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    DP+R+     +  +++      N           ++  +     
Sbjct: 173 SVDLYGGQTLAMRVWLDPARMAARGISAGEIAQALRDNNVQAAPGQTKGLYVVSNIQVNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +  +                      D+   ++            +    A      
Sbjct: 233 DLNNLTDF--------------------RDMVVRQVDGAIVRLGDVGTVELGAASYDSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          +     +    +E    L   ++    P     V          S   
Sbjct: 273 RMDGEKAVYFGLNATPVGNPLTIVERINALLPGIKQNLPPGVEVQVPFELARFINASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V+ V+F+ +   +  LV   +I L+++   A++  LG ++ L ++  +V
Sbjct: 333 VRNTLLEAVLIVVAVIFLCLGSLRAVLVPVVTIPLSMLGAAAIMLSLGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     + +S   +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVHRHIEEGKSPVHAALVGAREVAGPVIAMTLTLAAVYAPIGLMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI--PD 536
              G   + FA T+  ++ +S   A+++   M  F++  +  +         FF      
Sbjct: 453 GLTGSLFKEFAFTLAAAVGVSGVIALTLSPVMSSFLLNSRVSEGWMARKAEHFFQRLGDA 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +  +  R   V   I   + +   +        +       + + A +    + +  
Sbjct: 513 YGRVLDVSLRHRWVTGLIAVVVLASLPVLYGSAQRELAPVEDQAMILTAVKSPQHANIDY 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +  Q  D   Q    +    +        +      L   + +      
Sbjct: 573 VEKFGQKWDTVMQEIPEQNGRWLINGSDGVANSIGGVNLVTWQARKRSADE 623



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 81/248 (32%), Gaps = 11/248 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       + +  ++ +S    D     + G     V              +L  +K+ +
Sbjct: 253 VRLGDVGTVELGAASYDSSARMDGEKAVYFGLNATPVGNPLTIV--ERINALLPGIKQNL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
              V +               E+    +  V+I    + + +         L  + T+ L
Sbjct: 311 PPGVEVQVPFELARFINASIDEVRNTLLEAVLIVVAVIFLCLG---SLRAVLVPVVTIPL 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +          G   NL  + A++  IG  V+D +VV + +    +      S      
Sbjct: 368 SMLGAAAIMLSLGFSINLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGKSPVHAAL 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               E  G  +  ++       P+ + G   GS+   FA  +A  + V+   ++ ++  +
Sbjct: 425 VGAREVAGPVIAMTLTLAAVYAPIGLMGGLTGSLFKEFAFTLAAAVGVSGVIALTLSPVM 484

Query: 820 LLFIYDWR 827
             F+ + R
Sbjct: 485 SSFLLNSR 492



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 92/280 (32%), Gaps = 10/280 (3%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                      S  ++        +  +   Q  V +     + +      S+ +      
Sbjct: 732  YVNRFGMDGRSYDVIPQSPRGMRLTPQSLGQFYVKSASGAQVPLATLVKISMGVEPNRLT 791

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
             FD   +   +    PG ++         + ++         Q+      +    L    
Sbjct: 792  QFDQLNSATFQAIPMPGVTMGDAVQFLTEQARLLPPGFSHDWQSDARQYSQEGSAL---- 847

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +V  + + I + + +  +++     L  + ++ + I   L   AL     N+     ++T
Sbjct: 848  VVTFLFAIIVIYLVLAAQYESLRDPLIILVSVPMSICGALIPLALGMATINIYTQIGLVT 907

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG      +++ +   +        +  R  ++++    L   + T+ A  + ++P+  
Sbjct: 908  LIGLISKHGILMVEFANEMQAHA--GLDRRAAMERAARIRLRPILMTTAAMVVGLVPLLF 965

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G+      S  + +  G++V    ++F+   +   +  
Sbjct: 966  ASGAGAHSRFSLGLVIVVGMLVGTLFTLFVLPTMYTLLAR 1005


>gi|262381039|ref|ZP_06074177.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           2_1_33B]
 gi|262296216|gb|EEY84146.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           2_1_33B]
          Length = 1073

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/574 (12%), Positives = 160/574 (27%), Gaps = 49/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G L  +        + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGFLGLI-----SLPVTQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     N    I++ F      +  A  V  
Sbjct: 51  TGANAQTVLNSVIAPLEDQINGVENMMYMSSNASNNGSADISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  + T   +   +++     +     +           I ++   
Sbjct: 111 RVSMAQGLLPAEVTQIGVTTQKRQNSMLLVFSVYAEDDRYDSEFLENYAKINLIPEVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q   + + ++      N       FG +    + 
Sbjct: 171 PGVGDANVLGT-DYSMRIWLKPDVMAQYKLSPSDVTVALSEQNVEAAPGSFGEQ---GNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              + ++    +                +I       
Sbjct: 227 SFQYTIRYKGRL-------------QEANEFEQIVVKALPDGEVLRLKDIADIELGRLTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I       +   TI     L    +    P     +          
Sbjct: 274 NFINRVNGHDAVTCIVYQMPGTNATETISNIETLLEETQLTMPPGMKVNISMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G ++ L ++
Sbjct: 334 SIHEVIKTLLEAFVLVFIVVYVFLQDLRSTLIPAIAIPVALIGTFFMLSLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   + 
Sbjct: 394 CAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSAKLASIDAMSELGGAIVSITLVMMSVFIP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPL 528
           + F G   G   R F +TM ++I +S   A+++  A+           +K+ K+  ++  
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGLSALNALTLSPALCAIFLKPHDTEHKEKKTTFVSRF 513

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
              F       +   +            S   + 
Sbjct: 514 HTSFNAAYDSLLAKYKKSIVFFIQKKWLSFGIVA 547



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 87/311 (27%), Gaps = 28/311 (9%)

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                      +         ++     +   + +    + V +   +        ++ + 
Sbjct: 750  QGYYGGLYASNFNRFGKMYRVMVQADPDLRKNMESMKNIKVKSGNDMAPISQFITMKKVY 809

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
              DI  +        ++        S    + ++ V K              E+ G    
Sbjct: 810  GPDIISRFNMYTAIKVMVAPADGYTSGQALKAIDEVAKTTLPAGFDY-----ELGGMARE 864

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALFG 715
                      +I     + +Y+ +      +   L  + +    L+       G+ AL  
Sbjct: 865  EASTSGSTTALIFLLCFVFVYLLLSAQYESYILPLSVLLSVPFGLMGSFLFVQGWAALGN 924

Query: 716  IEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            I      V           A++ L+G    + +++ +   +  ++    +S         
Sbjct: 925  IPALKMIVGTMSNNIYMQIALIMLVGLLAKNAILIVEFALERRRM---GMSITWAAVLGA 981

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS+A  + +LPM   +G       +       G+ +     IFI   + + 
Sbjct: 982  AARLRPILMTSLAMVVGLLPMMFAFGVGAHGNRTLGTAAIGGMFIGMIFQIFIVPVLFVV 1041

Query: 823  IYDWRAKNARI 833
                + K   I
Sbjct: 1042 FQYLQEKFKPI 1052



 Score = 44.7 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 85/239 (35%), Gaps = 10/239 (4%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          +   +    +    +  Q    ++      +E + ++    +P     
Sbjct: 262 DIADIELGRLTYNFINRVNGHDAVTCIVYQMPGTNATETISNIETLLEETQLTMPPGMKV 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + I  ++ + + + I +++        L     + + +  T    
Sbjct: 322 NISMNANDFLFASIHEVIKTLLEAFVLVFIVVYVFLQDLRSTLIPAIAIPVALIGTFFML 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +     S     +   +++E  G 
Sbjct: 382 SLIGFSINLLTLCAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSAKLASI--DAMSELGGA 439

Query: 772 SVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  S+   +    +P++  GG+       F + MA  I ++A +++ ++  +      
Sbjct: 440 IV--SITLVMMSVFIPVSFMGGTAGTFYRQFGLTMAIAIGLSALNALTLSPALCAIFLK 496


>gi|121609246|ref|YP_997053.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
 gi|121553886|gb|ABM58035.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
          Length = 1026

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 71/618 (11%), Positives = 167/618 (27%), Gaps = 42/618 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GLL      L       +P+                   +     
Sbjct: 10  RPVATALLMLAIVLAGLLGLRLLPLSALPEVDYPTIE--------------VQTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S     + ITL F      +    +V   +   
Sbjct: 56  PEVMGRTVTAPLERQLGQMSGLARMASSSGAGLSIITLQFGLGLALDVAEQQVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + VL+   I        E    +  +   +I       +
Sbjct: 116 SALLPADLPAPPVYAKVNPADAPVLT-LAISSDRMPLTEVQNLVNTRLAQKISQVSGVGR 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + D   L         +       + +     F       +      
Sbjct: 175 VSLSGGQRPAVRIQADTRALASYGMGLDTLRTAITSAHANSAKGSFDGPQRAYTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                       +   D+                 +         G  
Sbjct: 235 LLT--------------------VRDYQDLILSWRNGAAVRLRDVARVIDGAENDRLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T++    L   L+AG        +          S +  
Sbjct: 275 ANETPAIILDVQRQPGANVIATVDRIRQLLPELQAGLPATLKVQLLSDRTRGIRASVTHV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A+   +V++V+F  +   +  ++A  ++ +++I T  ++ LLG +L   S+  + +
Sbjct: 335 AIELALAVLMVVLVIFFFLHSLRATVIASLAVPISLIGTCGVMYLLGYSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G ++   TI    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENITRYLHEGETPLRAAIKGATQIGFTIISLTLSLIAVLIPLLFMRD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
             G   R FA+T+ ++ILIS   ++++V  M                 +           
Sbjct: 455 VLGRLFREFAVTLAITILISAVVSLTLVPMMAARWLRPEPEGGSKGWFERGFGRVVAGYD 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +           +   +  ++ +   L      +     G +Q  + A + V  + + 
Sbjct: 515 RSLQWVLRHQGATLLVALLTLALTAWLYLVVPKGLFPTQDTGQLQARIEAAQDVSYARLS 574

Query: 596 SNLESLQIGDISFQNFDG 613
              ++     +   +   
Sbjct: 575 QLQQAAARAILQDPDVQS 592



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 82/239 (34%), Gaps = 10/239 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R     +   +         +   + L  Q          ++ +++ + E+        
Sbjct: 256 LRDVARVIDGAENDRLGAWANETPAIILDVQRQPGANVIATVDRIRQLLPELQAGLPATL 315

Query: 654 TEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLG 709
              +    +R +      V + ++   +++ + I F        + A   + + +  T G
Sbjct: 316 KVQLLSDRTRGIRASVTHVAIELALAVLMVVLVIFFFLHSLRATVIASLAVPISLIGTCG 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G   N  ++ A+    G+ V+D +V+ + +    +      +      K   +  
Sbjct: 376 VMYLLGYSLNNLSLMALTIATGFVVDDAIVMLENI---TRYLHEGETPLRAAIKGATQIG 432

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              +  +++    ++P+       G +   FA+ +A  I+++A  S+ +   +      
Sbjct: 433 FTIISLTLSLIAVLIPLLFMRDVLGRLFREFAVTLAITILISAVVSLTLVPMMAARWLR 491


>gi|86158658|ref|YP_465443.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775169|gb|ABC82006.1| Acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1047

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 79/630 (12%), Positives = 174/630 (27%), Gaps = 40/630 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V++  +I   GL       + Q                                
Sbjct: 9   RRPVIAVVVNLVIVIAGLQAIRTLNVRQYPRSENAQIT--------------VTTTYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    + + +            +Q  + I      +        ++   +  
Sbjct: 55  NAELVRGFITTPLERVIASADGIDYLESESKQNVSIIRARLRLNYDSNRALAEIGSKIDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  ++   T          +   + +    E +  ++R    ++   E   
Sbjct: 115 VRGDLPPEAEVPVVGIETADSQFASAYLSFSSKFLKQ-NEITDYLVRVVQPRLSSIEGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  + A++       N                 G   
Sbjct: 174 RADILGARTFAMRVWLRPDRMAALNVSPAQVREALARNNYQAA------------VGQTK 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++      +   F          +   E            ++           
Sbjct: 222 GSLVQVNLTANTDLRSVREFQQ--------LVVREHDGATVRLGDVADVALGAEDYDAEV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             T               +    I+        ++         +V          +   
Sbjct: 274 NFTGETAVFVGIWALPDANSLDVIKRVRTEMGAMQTQIPEQIKAVVAYDATAYIQDAIKD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A    +V+IV+F+ +   +  LV   +I +++I  + L+   G TL L ++  IV
Sbjct: 334 VEHTLAETLVIVVIVIFLFLGSLRSVLVPVVAIPVSLIGAVFLMQAFGFTLNLLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +    R+ ++   +   G       +    IT       + F G
Sbjct: 394 LSVGLVVDDAIVVVENVERHLREGKTRMEAALAGVRELVGPVIAMTITLAAVYTPIAFQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
              G   R FA+T+  ++ IS   A+++   M    +    + K +       F  + D 
Sbjct: 454 GLTGSLFREFALTLAGAVTISGVVALTLSPMMSAHLLREGGEAKGLARLLERGFERVRDV 513

Query: 538 IAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            A    ++ +  G   +   +I  +           +       + +        S +  
Sbjct: 514 YARHLEKSLQARGAIYAAWVAIIVLVGAMFAMAPRELAPTEDQGVVMGIVNTPSNSTLEQ 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            + + +  + S              Q   G
Sbjct: 574 LVPNTKAVNRSLMEMPEAGFTFQITQPTGG 603



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 85/233 (36%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V       +  D           F+        +S+   + +      +   +P 
Sbjct: 254 VRLGDVADVALGAEDYDAEVNFTGETAVFVGIWALPDANSLDVIKRVRTEMGAMQTQIPE 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                         ++ I+     +  + + ++I I++        L  +  + + +   
Sbjct: 314 QIKAVVAYDATAYIQDAIKDVEHTLAETLVIVVIVIFLFLGSLRSVLVPVVAIPVSLIGA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +     FG   NL  + A++  +G  V+D +VV + + ++++   T +   +     + E
Sbjct: 374 VFLMQAFGFTLNLLTLLAIVLSVGLVVDDAIVVVENVERHLREGKTRM---EAALAGVRE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +G  +  ++       P+A  G   GS+   FA+ +A  + ++   ++ ++ 
Sbjct: 431 LVGPVIAMTITLAAVYTPIAFQGGLTGSLFREFALTLAGAVTISGVVALTLSP 483



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 64/185 (34%), Gaps = 25/185 (13%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI--------- 716
             K +   +++ + + + +  +F  +   L  +   +       G  AL  +         
Sbjct: 842  NKFLPAFLLAIVLIFLVLAAQFNSFRDPLVILAGSVP--LGMFGALALVFLKMPNPQMPF 899

Query: 717  -------EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                     N+ +   ++TL+G    + +++ +      KL    +S  + + ++    L
Sbjct: 900  FTDGWTTTLNVYSQVGLVTLVGLVAKNGILIVEFAN---KLQEQGLSKVEAVRQAAVTRL 956

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ A     LP+      G     S  + +  G+ V  + ++     I + I   
Sbjct: 957  RPILMTTFATVFGHLPLTYVTGPGAEARNSIGLVLVAGMTVGTAFTLLFLPSIYVLIARD 1016

Query: 827  RAKNA 831
              K A
Sbjct: 1017 HRKEA 1021


>gi|189423242|ref|YP_001950419.1| acriflavin resistance protein [Geobacter lovleyi SZ]
 gi|189419501|gb|ACD93899.1| acriflavin resistance protein [Geobacter lovleyi SZ]
          Length = 1032

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/606 (10%), Positives = 179/606 (29%), Gaps = 46/606 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +   +  ++   +  +G          +  ++ +P+                  +V    
Sbjct: 9   KRPIFATVMMLALVALGFFS-----YKRLSVEMYPNVEMPV-----------ISIVTKYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + V   +    +E  + +          R+  + +   F        +A +    +
Sbjct: 53  GASPETVEREVSKRVEEAVNQIAGIKHVTSYSRESVSTVVAEFRLEERTNEVAQEARAKI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +  +L  + ++ ++       +    +   I        + +  + ++   +      
Sbjct: 113 SSIRGQLPKEVEEPIIQKLDFNAMP--SAAVAIQSSSLSQRDLTTLVDKKIRKRFESVTG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         ++  E DP RL  L      +       N +                 
Sbjct: 171 VGKVELVGGAKREVNVEVDPVRLDSLGLGVNDLVNGLKGENINTPLGK----------IT 220

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           +   E  + I G           P+       +       R         +   +     
Sbjct: 221 KSTAEYPLRIEGK----------PEQADSYSSMVIAARNNRPISLGEVARVTDGVEERRK 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++            ++  +    ++    +   ++A   P     +          S 
Sbjct: 271 LALVNGQPAIGLDIYKQSGANQVQVVDNVKKVMQKVKAEMPPGVTISLVRDGSIMTRQSL 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  + T  +   L ++++FM +   +  ++   ++ ++VI +  +++ +G TL + ++  
Sbjct: 331 ADVEETLLVGGILTVLIVFMFINSWRSTVITGVTLPISVISSFIVMNAMGMTLNVMTLMA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L IGL +D  I+V E I       +    +   G +     +F + ++ L   V + +
Sbjct: 391 LSLAIGLLIDDAIVVRENIVRHLELGKDHMEASRFGTAEIGLAVFATTMSILAVFVPVAY 450

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G     F IT+  ++L+S+F + ++   +                         +
Sbjct: 451 MRGIVGRFFFPFGITVSFAVLVSLFVSFTLDPMLSSRWHDPSIHNR---GNRKGLARWLE 507

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                F R+     GI        + ++ + G+ + +       L        D S  + 
Sbjct: 508 RFNDWFDRSADRYRGIIAWALQHRLKVVISAGIAFVLGLVVMATLESSFMSKEDTSEFQI 567

Query: 597 NLESLQ 602
           + ++  
Sbjct: 568 SFQTAP 573



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++   + +LI       W   +    TL + +  +       G+  N+  + A+   IG 
Sbjct: 338 LVGGILTVLIVFMFINSWRSTVITGVTLPISVISSFIVMNAMGMTLNVMTLMALSLAIGL 397

Query: 733 SVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++D +VV    R+N+ +         +       E       T+M+     +P+A   G
Sbjct: 398 LIDDAIVV----RENIVRHLELGKDHMEASRFGTAEIGLAVFATTMSILAVFVPVAYMRG 453

Query: 792 SVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V      F I ++F ++V+   S  +   +    +D
Sbjct: 454 IVGRFFFPFGITVSFAVLVSLFVSFTLDPMLSSRWHD 490



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 70/165 (42%), Gaps = 6/165 (3%)

Query: 672  GVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +I++ + + + +  +F+ +F  L  + +L L I    G   + G   N+ ++  ++ L+
Sbjct: 863  SLILAVLFVYLILAAQFESFFEPLAIMFSLPLSIVGMAGMLRITGDTINIMSLIGLIMLM 922

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ D  +  +      +     + ++    L   V T++A    +LP+    
Sbjct: 923  GLVTKNAILLVDYAK--VLRKRDGLERTAAVIEAGRTRLRPIVMTTLAMIFGMLPLFFGI 980

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              GG      A  +  G++ ++  ++ +   +  ++ D+     R
Sbjct: 981  GAGGEGRAPMARAVVGGLITSSVLTLIVVPVMYTYLDDFSNWLKR 1025


>gi|325293743|ref|YP_004279607.1| Acriflavin resistance protein [Agrobacterium sp. H13-3]
 gi|325061596|gb|ADY65287.1| Acriflavin resistance protein [Agrobacterium sp. H13-3]
          Length = 1106

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 74/669 (11%), Positives = 200/669 (29%), Gaps = 42/669 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ ++++  +G+            + RFP+                  +     
Sbjct: 9   RNPIAPLLGFALLMFLGI-----QAFNALPITRFPNIDVPVV---------AVTVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++   Q+  T+ F   +  E     V   +  
Sbjct: 55  SPSELEMQVTKEIEDAVAAISGVDEIQSTVTDGQSLTTVVFRIEKPTEEAVQDVKDAIDK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D +  ++     +  +I     +   +     E S  +       +       
Sbjct: 115 IRSDLPSDIEVPVVSKIDVEGQAIQTFAVSSPNMTLE--ELSWFVDDTIKRSLQGKSGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++     P +L     T ++++      N         V     +     
Sbjct: 173 KVDRYGGADREVRVSLSPEKLDAYGITASEVNGQLRGTNIDLGSGRGQVGGNEQTIRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D  +++   +  +   F        V  +++E  +   F                  
Sbjct: 233 DTRDVTQLANTTIALSNGRFVKLAELGTVTDTYEEQKSFSRFNGNPAVT----------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +   ++      +        P     + +  V    G+ + 
Sbjct: 282 ----------FAVFRSKGASEVSVAKTVAESLDQVRKDHPDVAIQMVDDAVYFTYGNYTA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+ + +   +  L+A  ++ L+ I T  ++ ++G +L L S   + 
Sbjct: 332 ALDTLIEGAVLAVIVVLLFLRNWRATLIAAVALPLSAIPTFWIMDIMGFSLNLVSFLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    +  ++ + +           +  ++ T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIKMGKTPYRASLEAADEIGLAVIATSFTIIAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F +T+  S+  S+  A  I   M  +++R +       +           +
Sbjct: 452 GIPGQYFIQFGLTVAFSVFFSLAVARLITPLMAAYLMRAEDAMDDHADNDGWLMKAYTRM 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYG--IDFKGGIQLGVLANRPVDLSVVRS 596
                   +      +      I  +       G  +      ++ +    P + ++  +
Sbjct: 512 VSATTSKWWARYLTLVGAIGFLIASVMLLSQVPGSFLPPDDASRVTLSVELPPNATLDET 571

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +  + +I          E  F++      GD   +   + ++ + I   +  + +     
Sbjct: 572 DRTTAEIFHAIRDINGVESVFILGGASPKGDLELRRATVNVILQHIDHSLLKTLVNKGLG 631

Query: 657 VGPKISREL 665
             P + + L
Sbjct: 632 SLPLVGQYL 640



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 81/251 (32%), Gaps = 6/251 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + +   R V L+ + +  ++ +      +            + +    V+  + +  
Sbjct: 242 NTTIALSNGRFVKLAELGTVTDTYEEQKSFSRFNGNPAVTFAVFRSKGASEVSVAKTVAE 301

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              ++ +  P   IQ  +                 +  + +A+++ +     W   L A 
Sbjct: 302 SLDQVRKDHPDVAIQMVDDAVYFTYGNYTAALDTLIEGAVLAVIVVLLFLRNWRATLIAA 361

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             L L    T     + G   NL +  A+    G  V+D +V  + +    +      + 
Sbjct: 362 VALPLSAIPTFWIMDIMGFSLNLVSFLALTLATGILVDDAIVEIENI---ARHIKMGKTP 418

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIF 814
                ++ +E     + TS       +P++   G        F + +AF +  + + +  
Sbjct: 419 YRASLEAADEIGLAVIATSFTIIAVFVPVSFMPGIPGQYFIQFGLTVAFSVFFSLAVARL 478

Query: 815 IAAPILLFIYD 825
           I   +  ++  
Sbjct: 479 ITPLMAAYLMR 489



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 91/236 (38%), Gaps = 7/236 (2%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++  +   +        ++N +V +        A        K+ ++E    ++++  E 
Sbjct: 804  SVADIDYSEGPSSIKRNDRNRVVSIGSDVPFGTALDTSTAEFKRIVSETELPASVRLAES 863

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               K+  E+ +  +  +++  + +L+ + + FK        + +L L I        +  
Sbjct: 864  GDAKVQGEMQQGFVNAMLLGLLLVLVVLILLFKDIIQPFTILFSLPLAIGGVAVALIITQ 923

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               ++  +  +L L+G    + +++ D   +  +     +     + ++  +     + T
Sbjct: 924  NALSMPVLIGILMLMGIVTKNAILLVDFAIEMRR---HGMERVHAMVEAGRKRARPIIMT 980

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            S+A    +LP A+    GGS     AI +  GI+V+   S+ +     L + D   
Sbjct: 981  SIAMSAGMLPSALGVGEGGSFRAPMAIAVIGGIIVSTVLSLIVVPAFFLIMDDLSR 1036


>gi|301347428|ref|ZP_07228169.1| hypothetical protein AbauAB0_14293 [Acinetobacter baumannii AB056]
 gi|301512546|ref|ZP_07237783.1| hypothetical protein AbauAB05_13212 [Acinetobacter baumannii AB058]
 gi|301595888|ref|ZP_07240896.1| hypothetical protein AbauAB059_08749 [Acinetobacter baumannii
           AB059]
          Length = 413

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 47/433 (10%), Positives = 111/433 (25%), Gaps = 30/433 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   GLL        Q  +  +P  +P + +                  
Sbjct: 10  RPIFAGVLSVLILLAGLLSVF-----QLPISEYPEVVPPSVV---------VRAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  IT++F      +     V   +  
Sbjct: 56  PKVIAETVASPLEESINGVEDMLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  + T        ++                   +    D++   +   
Sbjct: 116 AMPRLPEDVQRLGVTTLKSSPTLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   T  ++       N        G            
Sbjct: 176 EVGLFGSGDYAMRVWLDPQKVAQRNLTATEIVNAIREQNIQVAAGTIGASPSNSPLQLSV 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + ++                   +    I                 +    +      
Sbjct: 236 NAQGRL---------------TTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRS 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +        L           +          S   
Sbjct: 281 LLDNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKA 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T AL+   G ++   S+ G+V
Sbjct: 341 VVHTLLEAITLVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMV 400

Query: 422 LGIGLAVDSNILV 434
           L IG+ VD  I+V
Sbjct: 401 LAIGIVVDDAIVV 413



 Score = 48.1 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 6/132 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +    V +           +V + V+  + E+           +    ++ + R  I  V
Sbjct: 283 DNKQAVAIPIFQAPGANALQVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFV-RASIKAV 341

Query: 674 IISAI-AMLIY----IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           + + + A+ +     I     W  ++  +  + + I  T      FG   N  ++  ++ 
Sbjct: 342 VHTLLEAITLVVVVVILFLQTWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVL 401

Query: 729 LIGYSVNDKVVV 740
            IG  V+D +VV
Sbjct: 402 AIGIVVDDAIVV 413


>gi|323136572|ref|ZP_08071653.1| acriflavin resistance protein [Methylocystis sp. ATCC 49242]
 gi|322397889|gb|EFY00410.1| acriflavin resistance protein [Methylocystis sp. ATCC 49242]
          Length = 1047

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 73/633 (11%), Positives = 168/633 (26%), Gaps = 41/633 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   +   G+L  +   +       FP+     +              L   
Sbjct: 9   KRPVATSLMAFALLLFGVLGYMRLSISPLPQVDFPTIQVTTQ--------------LPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +              ++ITL F   R  +  A  V   +  
Sbjct: 55  NPDTIASLVTASLERQFGQIPSLTSMSSQSSFGLSQITLQFDLDRDIDAAAQDVQSAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  +     +        + VL+   +    +   + S         Q+       
Sbjct: 115 AASTLPKNLPYPPVYAKVNPADTPVLT-LTLRSKTATLRDLSDLADTLIAPQLSQVTGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +  E D +RL         +       N +             +     
Sbjct: 174 RVAVQGGVRPAVRIEADLARLAANRIGLEDLREAIAAANIAGAKGSLDGSRQSYTLDAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            I                N+ + L     G 
Sbjct: 234 QILKA--------------------DQYKTIVVAWRNKAPVMLSDVANVVEGLENARVGG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+E        LR          +          S   
Sbjct: 274 WYNGEQSIVLDVMRQPGANIISTVELVKKELPQLRGALPAGMALDIVNDRTDTIRASIHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I A LV+ V+ M +   +  ++A  S+ L++I T A++   G +L   S+  + 
Sbjct: 334 VELTLVIAAALVVFVVLMFLRSWRATIIAGVSLPLSIIATFAIMWAAGFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +G G  VD  I++ E I       +    +   G      T+    ++ +   + L F  
Sbjct: 394 IGTGFIVDDAIVMIENIVRNIEGGKKPLQAALDGAREIGFTVVSLTVSLIAVFIPLLFMT 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ +++++S   ++++   +   ++R+   ++     +   +L     
Sbjct: 454 GVVGRMFREFALTLTIAVVVSAVISLTLTPMLCATLLRHAPARTHTGWEIFSLWLDRAYY 513

Query: 539 A---IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                     RF         ++  +                 + + + A+       ++
Sbjct: 514 RSLDWALKHERFMLALTGATLALTMVLFATIPKGFLPRQDTSLLSVVLEASADTSFERMK 573

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                +           G  + L         +
Sbjct: 574 HLQGEVTKVFRRDPEVTGVISVLGVGPLNATTN 606



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 69/195 (35%), Gaps = 6/195 (3%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           V + + +    +     +         I   +    +  VI +A+ + + +     W   
Sbjct: 300 VKKELPQLRGALPAGMALDIVNDRTDTIRASIHEVELTLVIAAALVVFVVLMFLRSWRAT 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           + A  +L L I  T       G   +  ++ A+    G+ V+D +V+ + + +N++    
Sbjct: 360 IIAGVSLPLSIIATFAIMWAAGFSLDNLSLMALTIGTGFIVDDAIVMIENIVRNIEGGKK 419

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
                        E     V  +++     +P+    G V      FA+ +   +VV+A 
Sbjct: 420 ---PLQAALDGAREIGFTVVSLTVSLIAVFIPLLFMTGVVGRMFREFALTLTIAVVVSAV 476

Query: 811 SSIFIAAPILLFIYD 825
            S+ +   +   +  
Sbjct: 477 ISLTLTPMLCATLLR 491



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 91/220 (41%), Gaps = 6/220 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++     + +   + VA    ++++ K  T I    +I            + +      +
Sbjct: 799  DQFPASTISFDLSEGVALGDAVKLIAKAQTAIGMPESIMGVFSADAAEFNKSLASEPWLI 858

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + +A+ + + + ++ +      +TTL       L    LF I+ ++ A+  V+ L+G 
Sbjct: 859  LAAIVAIYVVLGVLYESFAHPFTVLTTLPSAGVGALLALMLFRIDLSIVALIGVVLLMGI 918

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D   +        +S RD I ++ +      + T++AA    LP+A+    
Sbjct: 919  VKKNAIMMIDFALE--AERVDGLSPRDSIIRAAHMRFRPIMMTTLAALFGALPLALAHGP 976

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G  +     + +  G++++ + +++    I L +   R +
Sbjct: 977  GSELRIPLGVSIIGGLLLSQALTLYTTPVIYLAVDRLRRR 1016


>gi|163803821|ref|ZP_02197672.1| putative multidrug resistance protein [Vibrio sp. AND4]
 gi|159172382|gb|EDP57258.1| putative multidrug resistance protein [Vibrio sp. AND4]
          Length = 1037

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/651 (9%), Positives = 173/651 (26%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      E  
Sbjct: 9   KRPVAALVLSLLLCVFGFVS-----FTKLSVREMPDIESPVV---------SISTRYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +        + R   ++IT++F            V   +  
Sbjct: 55  SATIIESQITSVLEDQLSGISGIDEISSTTRNSMSRITITFELGYDLNTGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++        + +    +  +      + +    R  +D+  +     
Sbjct: 115 AQRSLPDEADDPVVFKNNGSGEASLYINLSSSE--MDRTQLTDYAERVLMDRFSLISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     T + ++      N    G                
Sbjct: 173 SIDLSGGLYKVMYVKLKPELMAGRSVTASDITAALRSENLESPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      ++  TA            +          +     ++           
Sbjct: 219 -----VRNDSTVMSVRTARTYNTPEDFRYLVVKRASDNTPIYLKDVADVFIGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                V        ++  +     ++       ++          ++         S   
Sbjct: 274 KSDGVVNISLGVVPQSDANPLDVAQSVRSEVDKIQKFLPDGTRLAIDYDATVFIERSIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I  GLV++VL++ +   +  L+   ++ +++I +       G ++ L ++  ++
Sbjct: 334 VYSTLFITGGLVILVLYIFIGQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +S   +   G       +  + +  ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
           G        F++ + +S++ S   A+++   +   I++     +            L   
Sbjct: 454 GMVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNRFNQAVDKVFAKLEAG 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    +       I+ +           +   +  +    +     R  D +    
Sbjct: 514 YRKALRGALKVRWAAPLIIVACMGGSYFLMKQVPAQLTPQEDRGVIFAFVRGADATSYNR 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +++I +       G+          P            V   + +   
Sbjct: 574 MSANMEIVEDRLMPLLGQGFLKSFSIQTPAFGGQAGDQTGFVIMILEDWNE 624



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 91/284 (32%), Gaps = 12/284 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++           +    L V          ++   +     +     F  +  
Sbjct: 219 VRNDSTVMSVRTARTYNTPEDFRYLVVKRASDNTPIYLKDVADVFIGAENENSTFKSDGV 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L   P        V + V+ ++ +I           +    +  + R        +
Sbjct: 279 VNISLGVVPQSDANPLDVAQSVRSEVDKIQKFLPDGTRLAIDYDATVFIERSIDEVYSTL 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + +++YI+I  +    L    T+ + +  +      FG   NL  + A++  IG
Sbjct: 339 FITGGLVILVLYIFI-GQARATLIPAVTVPVSLISSFIAAYYFGFSINLITLMALILSIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +           S      K   E     + T++   +  LP++   G
Sbjct: 398 LVVDDAIVVVENI---FHHIERGESPLLAAYKGTREVGFAVIATTLVLVMVFLPISFMDG 454

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            V      F++ +A  ++ ++  ++ +   +   I     K  R
Sbjct: 455 MVGLLFTEFSVLLAMSVIFSSLIALTLTPVLGSQILKANVKPNR 498



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 49/138 (35%), Gaps = 6/138 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + +        + G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMLTVPMGVFGGFLGLVVMGQGMNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    I F   I  +    L   + T+       +P+ +    G     +    + FG+
Sbjct: 931  QLRDRGIEFEKAITDAAARRLRPIMMTAFTTLAGAIPLIISTGAGYESRVAVGTVIFFGM 990

Query: 806  VVAASSSIFIAAPILLFI 823
              A   ++F+   +   I
Sbjct: 991  GFATLVTLFVIPAMYRLI 1008


>gi|116624505|ref|YP_826661.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227667|gb|ABJ86376.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1034

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 63/515 (12%), Positives = 137/515 (26%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G             +   P+            L+   +  L    
Sbjct: 10  RPVMTTLIMLGILLFGAA-----GYRALPVSDLPNVDFPT-------LQ--VNANLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +   S +        +  +    +TL F   R  +  A  V   +   
Sbjct: 56  PETMAASVATPLERQFSTIPGLDSMTSTSSRGSTSVTLQFTLERSLDAAAQDVQSAIAAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L                   +L   +++       +           +I +     Q
Sbjct: 116 LRRLPPGMPNPPTFRKVNPADQPIL-NLSLNSPTLPLSQVDEYAETLISQRISMLTGVAQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  + DP+ L         +       N +             +      
Sbjct: 175 VNVMGAQKYAVRAQLDPNLLAARGIGIDDVQNALARNNVNLPTGTLWGPRQSFTVQATGQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                            +       R         +   +        
Sbjct: 235 LMSAA--------------------AFRPLIVAYRKGRPVRLEELGRVVDSVENDKVAGW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   +    ++    L    R    P     +      +   S +  
Sbjct: 275 FNNARSITLMVQRQPGTNTVEVVDRIKELLPTFREQMPPSVKLDILYDRSESIRESVNDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T  +   LV++V+F+ +      ++   ++ L++I T A +SL G TL   S+  + L
Sbjct: 335 KFTLMLTVALVIMVIFLFLRNVSATIIPSLALPLSIIGTFAAMSLAGYTLDNLSLMALTL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G  VD  I++ E I       +    +   G      TI    ++     + + F GG
Sbjct: 395 SVGFVVDDAIVILENIVRHIEMGKPRMEAAFEGAREIGFTILSMTLSLAAVFIPVLFMGG 454

Query: 483 GA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
                   FA+T+ ++ILIS F ++S+   +    
Sbjct: 455 IMGRLFHEFAVTISIAILISGFVSLSLTPMLCSRF 489



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/214 (13%), Positives = 79/214 (36%), Gaps = 12/214 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-----K 668
                + L  Q         V++ +K+ +              +    S  +       K
Sbjct: 276 NNARSITLMVQRQPGTNTVEVVDRIKELLPTFREQMPPSVKLDILYDRSESIRESVNDVK 335

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             + + ++ + M+I++++R      +     L L I  T    +L G   +  ++ A+  
Sbjct: 336 FTLMLTVALVIMVIFLFLR-NVSATIIPSLALPLSIIGTFAAMSLAGYTLDNLSLMALTL 394

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G+ V+D +V+ + +   ++         +   +   E     +  +++     +P+  
Sbjct: 395 SVGFVVDDAIVILENI---VRHIEMGKPRMEAAFEGAREIGFTILSMTLSLAAVFIPVLF 451

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            GG +      FA+ ++  I+++   S+ +   +
Sbjct: 452 MGGIMGRLFHEFAVTISIAILISGFVSLSLTPML 485



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 83/204 (40%), Gaps = 5/204 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +E V++  T+ +P +   + + V       L   G++ V+   +  ++   +   +  
Sbjct: 822  DAVERVRQVATQALPDTVRTSFQGVAAAYESSLGGMGMLLVMAILVIYMVLGILYESFIH 881

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  ++ L       L    +F  E N+ +   ++ LIG    + +++ D   +  +L+ 
Sbjct: 882  PLTILSGLPSAGLGALVTLLVFHDELNIYSFVGIIMLIGIVKKNAIMMIDFALEAQRLHQ 941

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              ++    I  +        + T+MAA +  LP+A+    G        + +  G+ V+ 
Sbjct: 942  --MAPAAAIYDACLVRFRPIMMTTMAALMGTLPIALGIGAGAEARRPLGLAVVGGLAVSQ 999

Query: 810  SSSIFIAAPILLFIYDWRAKNARI 833
              +++I     L++     + A++
Sbjct: 1000 LLTLYITPVFYLYMERLAGRRAKV 1023


>gi|117620367|ref|YP_854550.1| acriflavin resistance plasma membrane protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117561774|gb|ABK38722.1| acriflavin resistance plasma membrane protein [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 1026

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 72/609 (11%), Positives = 179/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  +G+         +  +  +P                         
Sbjct: 9   KRPILAISISFLIALLGVQAVF-----KMQVREYPEMTNTVVT---------VSTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S +   + IT     +         +   +  
Sbjct: 55  SADLIQGFITQPLEQAIAQADNIDFMTSSTQLGSSTITAYMKLNTNPNAALSDILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++       ++  +A + +  + R    Q+       
Sbjct: 115 VRSQLPKESEDPSVTMSTGSTTAVLYIGFTSPEL--NASQITDYLERVIKPQLFTVGGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP+++     T A +       N           F   +   + 
Sbjct: 173 KVDMYGGTKYALRVWLDPAKMAAFNLTAADVMSVLNSNNYQSATGQATGYFTLYNGNAET 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+                      +       +         +    +      
Sbjct: 233 QVNTTEELE--------------------RLVVATRDGKVIRLADIAKVSLEKSHDTYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +          +   L++         V   +  A   S S 
Sbjct: 273 TANGREAVVLAINAAPTANPINIAHDVLEMLPSLKSNMPSTMEANVLYDSTVAINESISE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A  A +VL+V+ + +   +  ++   +I L++I  + ++ + G ++ L ++  +V
Sbjct: 333 VIKTIAEAAAIVLVVITLFLGSFRAVIIPIITIPLSLIGVVMVMQMFGFSINLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +  F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHVKEGEEPFRAAIIGTREIAVPVIAMTVTLAAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ +S   A+++   M   +        K    +          
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIIALTLSPMMCAKMLKANEEPGKFESKVHHLLDRMTVR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     +     +   I+F+   +   F        + KG + +   A   V+L  
Sbjct: 513 YDAMLHAVMQKRIVVVLFAVIVFASLPMLFKFIPSELAPNEDKGVMAVLGTAPSNVNLDY 572

Query: 594 VRSNLESLQ 602
           ++  +E + 
Sbjct: 573 IQGTMEQVN 581



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 61/499 (12%), Positives = 140/499 (28%), Gaps = 22/499 (4%)

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                         +  I    V  V  M V           ++  +     A L     
Sbjct: 4   TDIFIKRPILAISISFLIALLGVQAVFKMQVREYPEMTNTVVTVSTSYYGASADLIQGFI 63

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           T  L         I     S  L +  I    + N +   +L    ++  S        +
Sbjct: 64  TQPLEQAIAQADNIDFMTSSTQLGSSTITAYMKLNTNPNAALSDILAKVNSVRSQLPKES 123

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
              +V +      AV     T        +     + R +   +     +  +D+   ++
Sbjct: 124 EDPSVTMSTGSTTAVLYIGFTSPELNASQITD--YLERVIKPQLFTVGGVSKVDMYGGTK 181

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN---- 586
           + L       +          +  + +  +          Y   + G  +  V       
Sbjct: 182 YALRVWLDPAKMAAFNLTAADVMSVLNSNNYQSATGQATGYFTLYNGNAETQVNTTEELE 241

Query: 587 ---------RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                    + + L+ +                   E   L        + +     +  
Sbjct: 242 RLVVATRDGKVIRLADIAKVSLEKSHDTYRATANGREAVVLAINAAPTANPINIAHDVLE 301

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGA 696
           +   +   +P +   N          E I + I  +  +A  +L+ I +    +   +  
Sbjct: 302 MLPSLKSNMPSTMEANVLYDSTVAINESISEVIKTIAEAAAIVLVVITLFLGSFRAVIIP 361

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           I T+ L +   +    +FG   NL  + A++  IG  V+D +VV + +    +       
Sbjct: 362 IITIPLSLIGVVMVMQMFGFSINLMTLLAMVLAIGLVVDDAIVVLENV---DRHVKEGEE 418

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                     E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++
Sbjct: 419 PFRAAIIGTREIAVPVIAMTVTLAAVYAPIALMGGITGSLFKEFALTLAGAVFVSGIIAL 478

Query: 814 FIAAPILLFIYDWRAKNAR 832
            ++  +   +     +  +
Sbjct: 479 TLSPMMCAKMLKANEEPGK 497



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 67/177 (37%), Gaps = 7/177 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLG 709
               + +G           +     ++   + + + I+F+     L  + ++ L I+  L 
Sbjct: 830  YRYDYMGEARQFVTEGSALYATFALALAIIFLVLAIQFESARDPLVIMVSVPLAISGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++   L+  +    + +  +    L
Sbjct: 890  ALAWGAATMNIYSQVGLITLVGLITKHGILICEVAKEEQLLHGRNR--MEAVMAAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++
Sbjct: 948  RPILMTTAAMIAGLIPLLYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYTYL 1004


>gi|90581495|ref|ZP_01237289.1| putative multidrug resistance protein [Vibrio angustum S14]
 gi|90437356|gb|EAS62553.1| putative multidrug resistance protein [Vibrio angustum S14]
          Length = 1025

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/609 (11%), Positives = 156/609 (25%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G          +  + ++P                         
Sbjct: 9   RRPVLAISISLMIALLGFQAIF-----KMQVRQYPEMTNTVVT---------VSTAYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +                + IT+    +         +   +  
Sbjct: 55  SADLMQGFITQPLEQAIAQADNIDYISAQSTLGMSTITVQMKLNTNPNAALADILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T     ++      + + S   + +  + R    Q+       
Sbjct: 115 VRSQLPTETQDPTITLSTGGNTGVLYLGFTSNSLNSS--QINDYLERVVKPQLFTVSGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP ++     +   +       N           F+  +     
Sbjct: 173 KVDMYGGVPYALRVWLDPQKMAAFNLSATDVIQVLKANNYQSAVGQVKNDFVLYNGSANT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +                      +       +         +           
Sbjct: 233 QSNSPETLE--------------------KLVVTSKDGQVTRLGDIAKVTLSKESDTYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A        +          L   +           V   +  A   S   
Sbjct: 273 TANGQEAVVAAIEAAPSANPIDIAADVLKLLPTIERNMPSTIKMTVMYDSTIAINDSIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L+++    ++ + G +  L ++  +V
Sbjct: 333 VIKTILEAAVIVLVVIALFIGSLRSVLIPIITIPLSLVGVALVMQMFGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  QS F +  +G       +    I        +   G
Sbjct: 393 LAIGLVVDDAIVVLENVERHMKMGQSPFRAAIIGTREIAIPVISMTIALGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ IS   A+++   M            K  +++          
Sbjct: 453 GLTGSLFKEFALTLAGAVFISGIIALTLSPVMCAHFLKENAAPNKFEQAVHRFLDRLTLR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           V     F        F        +  G +     A    +L  
Sbjct: 513 YEKMLGGIMKMRSVVIVFAICAFVSLPFLFKFIPSELAPAEDSGVVVFQGNAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +   +  + 
Sbjct: 573 IEDTMNQVN 581



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 79/188 (42%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           ++L  +++ +   + ++ + ++ I       E+I+  +   +I  + + ++I        
Sbjct: 301 KLLPTIERNMPSTIKMTVMYDSTIAINDSIHEVIKTILEAAVIVLVVIALFIG---SLRS 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  I T+ L +        +FG  +NL  + A++  IG  V+D +VV + +    +   
Sbjct: 358 VLIPIITIPLSLVGVALVMQMFGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---ERHMK 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              S          E     +  ++A      P+A+ G   GS+   FA+ +A  + ++ 
Sbjct: 415 MGQSPFRAAIIGTREIAIPVISMTIALGAVYAPIALMGGLTGSLFKEFALTLAGAVFISG 474

Query: 810 SSSIFIAA 817
             ++ ++ 
Sbjct: 475 IIALTLSP 482



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 66/177 (37%), Gaps = 7/177 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             +   +G           +     ++   + + + I+F+     L  + ++ L I   L 
Sbjct: 830  YSYNYLGESRQYVTEGNALYATFGLALAVIFLVLAIQFESLRDPLVILVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TLIG      +++ +  ++    +  +    + + ++    L
Sbjct: 890  ALAWGATTLNIYSQIGLITLIGLITKHGILICEVAKEEQLYHGKNR--LEAVMEAAKIRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  F+
Sbjct: 948  RPILMTTCAMIAGLVPLLYASGAGAASRFSIGIVIVAGLSIGTLFTLFVLPVIYTFL 1004


>gi|126462264|ref|YP_001043378.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103928|gb|ABN76606.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 1025

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 74/539 (13%), Positives = 148/539 (27%), Gaps = 39/539 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L S I  IGL            + ++P                         
Sbjct: 9   RRPVASTVLASFILLIGLYSIF-----NLPVRQYPEVEETVVT---------ITTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+        +  +         R   + +++        +    +V   +Q 
Sbjct: 55  SPDLIQGFITAPIARAVATTENIDYVTSQSRPSASVVSVQMKLGANSDVALTEVLAKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  + +  ++V  T    +++            A + +  + R    ++   E   
Sbjct: 115 VRGELPSEAEDPVIVKGTGDNFALMY--LAALNPNMSAEQMTEYLERVIRPRMSTIEGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     T +++       N           +   S   Q 
Sbjct: 173 EIQIIGAAEYAMRVWIDPMKLAARNVTASEVLTAIRASNFLSAPGRTEGEYFARSIKLQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +     G          ++    A      
Sbjct: 233 TLQTPEAFGA--------------------LPIRSQGDEVVRLRDVADVELASAEPDSIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T          + A         +   +      S   
Sbjct: 273 TFNGQPGTFIGIFPTPAANPLTTAAAVIEELPAINATLPQGMEINLVYDSTETITASIYE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +V++V+ + +   +  L+   +I L++I   A+L  LG ++ L S+  +V
Sbjct: 333 VFKTLAEAVAIVVVVILLFLGSFRSVLMPIVTIPLSLIGVCAVLLALGYSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +  S + +   G       +    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIDEGMSPYHAALKGMREITGPVIAMTITLAAVLAPLGFSG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
              G     FA  +  S++IS   A++I   M   +++                   + 
Sbjct: 453 GLTGSLFAEFAFALAGSVIISGVVALTITPMMSARLLKAGTGSRFQRIVDHTLEGTANW 511



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ L +          G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLMPIVTIPLSLIGVCAVLLALGYSINLLSLLAMVLAIGLVVDDAIVVVENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +S      K + E  G  +  ++     + P+   G   GS+   FA  +A
Sbjct: 411 ---RHIDEGMSPYHAALKGMREITGPVIAMTITLAAVLAPLGFSGGLTGSLFAEFAFALA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++   ++ I  
Sbjct: 468 GSVIISGVVALTITP 482



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++    + + + + +  +F+ +      + ++ L I   +    L     N+     ++T
Sbjct: 849  LLAFAAAVVVIYLVLAAQFESFRDPFIIMMSVPLSIFGAILPLNLGLGTLNIYTQVGLIT 908

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG      +++ +    N +     ++ R  I  +    L   + T+ A  ++V+P+ +
Sbjct: 909  LIGLITKHGILMVE--FANQQREEHGLNRRQAIVAAAKVRLRPILMTTAAMALAVVPLII 966

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G     +  I +  G+++    ++F+      FI  
Sbjct: 967  AEGAGAEARQAMGIVIFTGLLIGTCFTLFVVPMFYTFISK 1006


>gi|51597130|ref|YP_071321.1| multidrug efflux system subunit MdtB [Yersinia pseudotuberculosis
           IP 32953]
 gi|153948688|ref|YP_001400195.1| multidrug efflux system subunit MdtB [Yersinia pseudotuberculosis
           IP 31758]
 gi|170023573|ref|YP_001720078.1| multidrug efflux system subunit MdtB [Yersinia pseudotuberculosis
           YPIII]
 gi|186896222|ref|YP_001873334.1| multidrug efflux system subunit MdtB [Yersinia pseudotuberculosis
           PB1/+]
 gi|60389947|sp|Q668C6|MDTB_YERPS RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|51590412|emb|CAH22052.1| AcrB/AcrD/AcrF(HAE1)family (RND superfamily) drug efflux pump
           [Yersinia pseudotuberculosis IP 32953]
 gi|152960183|gb|ABS47644.1| multidrug resistance protein MdtB [Yersinia pseudotuberculosis IP
           31758]
 gi|169750107|gb|ACA67625.1| acriflavin resistance protein [Yersinia pseudotuberculosis YPIII]
 gi|186699248|gb|ACC89877.1| acriflavin resistance protein [Yersinia pseudotuberculosis PB1/+]
          Length = 1052

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 60/542 (11%), Positives = 144/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMIAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +          +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPYPPIYNKVNPADPPILT-LAVTATAIPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTLSGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEEYRDLIIAYQNGAPIRLQDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           V          S +  
Sbjct: 284 ANTQSAIVLNIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTSTIRASVNDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYLFLRNAAATIIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F   
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMED 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  I ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSAEEYRDLIIAYQNGAPIRLQDVATIEQGAENNKLAAWANTQSAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   V              +  EL+    
Sbjct: 293 NIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTSTIRASVNDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 349 --LAIALVVMVIYLFLR-NAAATIIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+    
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFME 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 82/204 (40%), Gaps = 7/204 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +  V     EI   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 830  EAVAAVTLAEKEIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPITILSTLPTAGVGALLALMLTGNELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGVGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               ++F   P++  ++D  A+N R
Sbjct: 1008 QVLTLF-TTPVIYLLFDKLARNTR 1030


>gi|329954447|ref|ZP_08295538.1| RND transporter, HAE1 family [Bacteroides clarus YIT 12056]
 gi|328527415|gb|EGF54412.1| RND transporter, HAE1 family [Bacteroides clarus YIT 12056]
          Length = 1036

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 64/637 (10%), Positives = 165/637 (25%), Gaps = 43/637 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   ++L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAENRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D +       +          +     P +
Sbjct: 135 PSQLMTICLTSSDPKFDEIYLSNFATINVLDLLRRIPGVGRVSNIGSRYYAMQIWAMPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSSAKQFEDIVVRANANGSIIRLRDVARVSLEASSYSTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               +        + A         +          S      T      LV++V+F+ +
Sbjct: 301 MEVADNVKKAMEEISANFPEGMSYEIPFDMTTYISESIHEVYKTLFEALILVVLVVFLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE- 440
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENVEHL 420

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVLFFFGGGAVRGFAITMGLSIL 497
              +  S + +     S     +  ++       +    L    G   R F IT+ +S+L
Sbjct: 421 METEKLSPYEATKKAMSGLTGALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYK-------KMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
           +S   A+++   M   I++           + I+             I+      R    
Sbjct: 481 LSTVVALTLSPVMCSLILKPGSGKKKNIVFRKINEWLNISNHKYIGVISRVIKHPRRLMS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              ++     I            + +G  ++ +       L   R   +           
Sbjct: 541 AFGMVLIAIFIIHRLIPTSFLPAEDQGYFKVELELPEGATLERTRIVTDRAVKYLEKNPY 600

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +N          +       + +   +  +   
Sbjct: 601 VAYVQNVTGSSPRVGSNQARSELTVILKPWEDRKNTT 637



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/138 (19%), Positives = 63/138 (45%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVENV--EH 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
            + T  +S  +   K+++   G  + TS+      +P+  + G  G +   F I +A  +
Sbjct: 420 LMETEKLSPYEATKKAMSGLTGALIATSLVLCAVFVPVSFLSGITGQLYRQFTITIAVSV 479

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   ++   +P++  +
Sbjct: 480 LLSTVVAL-TLSPVMCSL 496



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +         A+ G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVAVCGLENDIYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDNGGDLVQSAIHAAQLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            + A    I +     + IY  +AK
Sbjct: 1005 IFAIVFGIVLVPFFFVLIYKAKAK 1028


>gi|310817956|ref|YP_003950314.1| acriflavin resistance family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309391028|gb|ADO68487.1| Acriflavin resistance family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1043

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/524 (11%), Positives = 143/524 (27%), Gaps = 38/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL       + Q                                
Sbjct: 9   RRPVVALVVNLIIIIAGLQAIQSLNVRQYPRSESADITVTTA--------------YVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    +   +             Q  + I      +        +++  +  
Sbjct: 55  NAELVRGFITTPLERAIASADGIDYIESQSLQGVSTIRARLKLNYDANRALSEISAKVDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  ++   + +        +     +    E +  ++R    ++   E   
Sbjct: 115 VRGDLPPEAQVPVINIESAESQFAAAYLSFSSDFLKQ-NEITDYLVRVVQPRLSAVEGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  + A++       N                 G   
Sbjct: 174 RADLLGGRTFAMRIWLKPDRMAALNISPAQVRQALATNNYLSA------------VGQTK 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++      +   F          +     G          ++           
Sbjct: 222 GSLVQVNLTANTDLRSVEEFRQ--------LIVRRDGGAVVRLSDIADVVLGAEDYDSDV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    +         L+          +          +   
Sbjct: 274 RFVGQTAVFIGIWALPHANSLDVLRNVRTEMEALQRDLPEQIKGTIAYDGTDYIQNAIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   +I +++I T+ L+ + G T+ L ++  +V
Sbjct: 334 VVNTLGETLLIVVVVIFLFLGSVRSILIPVVAIPVSLIGTVFLMQVFGFTVNLLTLLAVV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +    R   S   +   G       I    IT       + F G
Sbjct: 394 LSVGLVVDDAIVVVENVERHLRDGLSPLDAALKGARELVGPIIAMTITLAAVYAPIAFQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   R FA+T+  ++ +S   A+++   M   +++      
Sbjct: 454 GLTGSLFREFALTLAGAVTLSGVVALTLSPMMSAALLKAGHEDK 497



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS +   +   +  D   +       F+        +S+   R +    + +   +P 
Sbjct: 254 VRLSDIADVVLGAEDYDSDVRFVGQTAVFIGIWALPHANSLDVLRNVRTEMEALQRDLPE 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                    G    +  I + +  +  + + +++ I++        L  +  + + +  T
Sbjct: 314 QIKGTIAYDGTDYIQNAIDEVVNTLGETLLIVVVVIFLFLGSVRSILIPVVAIPVSLIGT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +    +FG   NL  + AV+  +G  V+D +VV + +    +     +S  D   K   E
Sbjct: 374 VFLMQVFGFTVNLLTLLAVVLSVGLVVDDAIVVVENV---ERHLRDGLSPLDAALKGARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +G  +  ++       P+A  G   GS+   FA+ +A  + ++   ++ ++ 
Sbjct: 431 LVGPIIAMTITLAAVYAPIAFQGGLTGSLFREFALTLAGAVTLSGVVALTLSP 483



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 63/174 (36%), Gaps = 21/174 (12%)

Query: 672  GVIISAIAMLIYIWIRF-KWYFALGAI-----TTLILDITKTLGFFALFGIE-------- 717
              +++ + + + +  +F  +   L  +       L   +  T        +         
Sbjct: 847  AFLLAVVLIFLVLAAQFNSFRDPLIILAGSVPLALFGALLTTFLKMPNPNMPYFTDGFTT 906

Query: 718  -FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              N+ +   ++TL+G    + +++ D      +L     +  D + ++ +E L   + T+
Sbjct: 907  TLNIYSQVGLVTLVGLVSKNGILIVDFAN---RLQAEGRTKLDAVREAASERLRPILMTT 963

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +A      P+ +    G +   S  + +  G+ +    ++F    I L I   R
Sbjct: 964  VATVAGHFPLVLVEGPGAAARNSIGLVLVTGMAIGTFFTLFFVPAIYLLIARTR 1017


>gi|223940239|ref|ZP_03632098.1| acriflavin resistance protein [bacterium Ellin514]
 gi|223891066|gb|EEF57568.1| acriflavin resistance protein [bacterium Ellin514]
          Length = 1037

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/538 (10%), Positives = 150/538 (27%), Gaps = 37/538 (6%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMY 73
            +G+++          +   P+                  +         + +   +   
Sbjct: 1   MVGVVLMGLLGYVLLPISALPAVDFPT-----------IQVTAQYPGASPEVMASSVTTP 49

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            +     +              + ITL F   R  +  A  V   +   N  L       
Sbjct: 50  LERQFGQISGLSQMTSISAFGNSSITLQFGLDRDIDAAAQDVQAAINAANGYLPKTMPNP 109

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
              +      + +++            + +         ++                  +
Sbjct: 110 PTYSKVNPADTPIITLEISSD-TLPLEKVNDLADTVLAQKLSQVAGVGLVTIEGNQKPAV 168

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               +P+ +  L  +   +    V  N +     F       + G    +          
Sbjct: 169 RVRVNPAAITGLGISMEDIRTALVQNNVNAPKGSFDGARQAYAIGANDQI---------- 218

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                      + +   ++                 +   +  V     +          
Sbjct: 219 ----------FSAEEYKNVIVAYKNGSPVRLGDIGQVIDNVENVRLAGWVDNRPAVILDI 268

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             +   +   T +    L   LRA   P     +          S +  + T  +  GLV
Sbjct: 269 QRQPGANIIETADRVKALLPRLRASIPPTVKVDILTDRTTTIRASIADVQFTLLLTVGLV 328

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           + V+F+ +      ++   ++ L +I T  ++ L+G TL   S+  + +  G  VD  I+
Sbjct: 329 VAVIFVFLRKFWATVIPSVALPLAIIGTFGVMKLIGFTLDNLSLMALTIATGFVVDDAIV 388

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAI 490
           + E I       +    +   G  +   T+   +++ +   + L F     G   R FAI
Sbjct: 389 MIENIVRFIEMGEPPMEAALKGARQIGFTVISLSVSLIAVFIPLLFMTGIVGRLFREFAI 448

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
           T+ +S+++S   ++++   M   +++ +  +       +   +    +       ++ 
Sbjct: 449 TLSISVVVSAIVSLTLTPMMCARLLKPESQEKHGRFYNATERMFQGMLNWYESGLKWV 506



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 71/202 (35%), Gaps = 6/202 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q          RV  ++ +    I P   +         I   +       ++   +
Sbjct: 268 IQRQPGANIIETADRVKALLPRLRASIPPTVKVDILTDRTTTIRASIADVQFTLLLTVGL 327

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + +      K++  +     L L I  T G   L G   +  ++ A+    G+ V+D +
Sbjct: 328 VVAVIFVFLRKFWATVIPSVALPLAIIGTFGVMKLIGFTLDNLSLMALTIATGFVVDDAI 387

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +   ++         +   K   +     +  S++     +P+    G V     
Sbjct: 388 VMIENI---VRFIEMGEPPMEAALKGARQIGFTVISLSVSLIAVFIPLLFMTGIVGRLFR 444

Query: 796 SFAIPMAFGIVVAASSSIFIAA 817
            FAI ++  +VV+A  S+ +  
Sbjct: 445 EFAITLSISVVVSAIVSLTLTP 466


>gi|262274646|ref|ZP_06052457.1| RND multidrug efflux transporter [Grimontia hollisae CIP 101886]
 gi|262221209|gb|EEY72523.1| RND multidrug efflux transporter [Grimontia hollisae CIP 101886]
          Length = 1024

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 46/501 (9%), Positives = 135/501 (26%), Gaps = 38/501 (7%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           ++   G++        +  +  +P                             +   +  
Sbjct: 2   LLLVFGIVS-----FSKLAVREYPDIDSPVV---------SVMTRYAGASASIMESQITQ 47

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             ++  S +          R   ++IT+ F            V   +     +L  +  +
Sbjct: 48  VLEDELSGISGIEEITSVSRNGMSRITVEFDIDWDLTEGVSDVRDAVARAQRRLPDEADE 107

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++  +     + +       +      + +    R   D+  +            +   
Sbjct: 108 PIVSKSNGSGEASIYINLASPE--MDRTQLTEYAQRVLEDKFSLLSGVSSVELYGALYKV 165

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           +    DP  +     TT+ ++      N    G        + +   + L          
Sbjct: 166 MYVRLDPVLMAGRGVTTSDITDALRRENLESPGGEIRNDVTKMTVRTERL---------- 215

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                              +          +     ++                      
Sbjct: 216 ---------YQTPEDFNYLVVRTANDGSPIYLKDVADVYIGSQNENATYKNNGVNNLSLG 266

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              ++  +          L    +          ++  +      S      T  +   L
Sbjct: 267 IVPQSDANPLDVAVAVRQLVDEFQPFLPQGTSLWIDYDSTVFIERSIDEVYSTLFVTGAL 326

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           V++VL++ +   +  L+   ++ +++I         G ++ L ++  ++L IGL VD  I
Sbjct: 327 VVLVLYIFIGQARATLIPAVTVPVSLISAFIAAYFFGFSINLLTLMALILAIGLVVDDAI 386

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           +V E +     K ++   +   G       +  +    ++  + + F  G        F+
Sbjct: 387 VVVENMFHHIEKGETPLVAAFNGTREVGFAVVATTAVLVMVFLPISFMEGMVGKLFTEFS 446

Query: 490 ITMGLSILISMFTAISIVRAM 510
           + + +S++ S   A+++   +
Sbjct: 447 VLLAMSVIFSSVVALTLTPVL 467



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/271 (13%), Positives = 84/271 (30%), Gaps = 12/271 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
               +  +           +    L V          ++   +           +     
Sbjct: 201 IRNDVTKMTVRTERLYQTPEDFNYLVVRTANDGSPIYLKDVADVYIGSQNENATYKNNGV 260

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-----GIV 671
             + L   P        V   V++ + E  P      +  +    +  + R        +
Sbjct: 261 NNLSLGIVPQSDANPLDVAVAVRQLVDEFQPFLPQGTSLWIDYDSTVFIERSIDEVYSTL 320

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V  + + +++YI+I  +    L    T+ + +         FG   NL  + A++  IG
Sbjct: 321 FVTGALVVLVLYIFI-GQARATLIPAVTVPVSLISAFIAAYFFGFSINLLTLMALILAIG 379

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + M           +          E     V T+    +  LP++   G
Sbjct: 380 LVVDDAIVVVENM---FHHIEKGETPLVAAFNGTREVGFAVVATTAVLVMVFLPISFMEG 436

Query: 792 SVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
            V      F++ +A  ++ ++  ++ +   +
Sbjct: 437 MVGKLFTEFSVLLAMSVIFSSVVALTLTPVL 467



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/138 (13%), Positives = 48/138 (34%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L  + T+ + I        L     N+ +   ++ LIG    + +++ +      
Sbjct: 856 SFVNPLVVMLTVPMGIFGGFVGLWLTNQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 912

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
           +L      F   I  +    L   + T+    I  +P+ +    G     +    +  G+
Sbjct: 913 QLRDRGEPFEKAIIDASVRRLRPIMMTAFTTIIGAIPLIISTGAGYESRVAVGTVIFAGM 972

Query: 806 VVAASSSIFIAAPILLFI 823
             A + ++F+   +   +
Sbjct: 973 TFATTVTLFVIPAMYRLL 990



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/522 (9%), Positives = 137/522 (26%), Gaps = 36/522 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  ++  L  + C  G    + N   Q +       +    ++      G ++  +  + 
Sbjct: 505 NARFVAPLIILACIGGSAYLMKNLPAQLVPQEDRGVL----MAFVKGAEGTAYNRMVGNM 560

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIG-VFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           ++     + +    L + +  +              + +   D   ++  A++V   ++ 
Sbjct: 561 EEIERRLMPLVEKGLLTSISMQAPAFGGMAGDQTGFVIMQLEDWDNRDQTAEQVLGEVRN 620

Query: 122 VNSKLNV-DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +     +  +          +       D    +   Q M    +       ++  
Sbjct: 621 ALGGIPDIFMRAFMPGFRGGSSEPVQFILGGADYQELNKWAQVMLDEAKASPIFQGAD-- 678

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              L       +L    D  R  +L  +       +V                 D     
Sbjct: 679 ---LDYAETTPELVVRVDRKRAAELGISAD-----EVSNTMEIMLGGKSETTFVDRGEEF 730

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +     E      +  +  +    +  +V +             T  +  K  ++ L  
Sbjct: 731 DVYLRGDETRFNSKDDISQIYMRTRNGDLVSLDTLADVQEIASAQTLRHFNKQKSITLTA 790

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +  A+    A+       + +   +             ++             
Sbjct: 791 NLGEGYTLGDALNFLDAKAIERLPADISISYSGESAEFKDNQSSILIVFGLALLVAYLVL 850

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   +V++ + M +  G  G                 L L    L + S  G+
Sbjct: 851 AAQFESFVNPLVVMLTVPMGIFGGFVG-----------------LWLTNQGLNIYSQIGM 893

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++ IG+   + IL+ E   +   + +    ++     R    I  +  T +I  + L   
Sbjct: 894 IMLIGMVTKNGILIVEFANQLRDRGEPFEKAIIDASVRRLRPIMMTAFTTIIGAIPLIIS 953

Query: 481 GGGAVRG---FAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            G            +   +  +    + ++ AM   +     
Sbjct: 954 TGAGYESRVAVGTVIFAGMTFATTVTLFVIPAMYRLLSVKTH 995


>gi|294778119|ref|ZP_06743550.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides vulgatus PC510]
 gi|294447978|gb|EFG16547.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides vulgatus PC510]
          Length = 1072

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 78/622 (12%), Positives = 165/622 (26%), Gaps = 56/622 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    + ++P   P                      
Sbjct: 9   RPVLSTVISVLIVILGII-----GLATLPVTQYPDIAPPTVQ---------VRATYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
              V   L      L   +        I   +       I + F      +  A  V   
Sbjct: 55  STAV---LNSVIAPLEDQINGVENMMYIQSSASNNGAADINVYFNQGTDPDMAAVNVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +      L  +  K  + T   +   +++     +    +            I +I   +
Sbjct: 112 VSMAQGLLPAEVTKVGVTTQKRQNSMLMVFSLYDETDSYNIEFIENYANINLIPEIKRVK 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +     P  + Q       +S      N       FG    R +  
Sbjct: 172 GVGDANVLG-QDYSMRIWLKPDVMAQYKLVPTDVSAALAEQNIEAAPGQFGE---RGNQT 227

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            QY +  K  +              +T +    +                +I        
Sbjct: 228 FQYTIRYKGRL-------------QQTTEFEDIVIKALPDGNVLRLGDVADIELGRLAYT 274

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              ++        I    A  +   TI     + A  +          + +        S
Sbjct: 275 FNNMVNGHKAVSCIVYQMAGSNATETISDLEKVLAKAQESLPTGLNINIAQNANDFLFAS 334

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV IV+++ +   +  L+   +I + ++ T  +L L+G ++ L +++
Sbjct: 335 IHEVIKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALVATFFVLKLIGFSVNLLTLS 394

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   + +
Sbjct: 395 AMVLAIAIVVDDAIVVVEGVHAKLDQGYKSSREASIDAMSELGGAIVSITLVMMSVFIPV 454

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------------KKM 520
            F G   G   R F ITM +SI  S   A+++  A+    ++               +  
Sbjct: 455 SFMGGTAGTFYRQFGITMAISIGFSALNALTLSPALCAIFLKPHDEGHGAKKMTRVERFH 514

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
            + +    S        +     +       ++    +    +  T       +  G I 
Sbjct: 515 TAFNAAYDSILKKYKKHVVFFIHKKWLSFGLVAASIILLVFFMKVTPTGMVPNEDTGTIM 574

Query: 581 LGVLANRPVDLSVVRSNLESLQ 602
             V              L  + 
Sbjct: 575 GAVTLPPGTSQERAMEILNRVD 596



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/452 (13%), Positives = 121/452 (26%), Gaps = 39/452 (8%)

Query: 413  TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            T+ S  G + G G +  S I+  +   E +    S    +   F RA   I D+    ++
Sbjct: 609  TVISGFGFIGGQGPSYGSIIIKLKDWEERSMMQNSDI-VVGTLFMRAQKIIKDAQ---VL 664

Query: 473  ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
                    G  A     + M       +     +V   M  +    ++ S        F 
Sbjct: 665  FFAPPMIPGYSASSDIELNMQDKTGGDLNHFYDVVLDYMDALKARPEINSAQTTFNPNFP 724

Query: 533  LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                 I     +         +         L+    N        + +        +L 
Sbjct: 725  QYMLDIDAAACKKAGISPSDILTTMQGYFGGLYASNFNR-FGKMYRVMIQAEPEATKNLE 783

Query: 593  VVRSNLESLQIGDISFQNFDGEK-----------NFLVRLQYQPGDSVAQTRVLEMVKKK 641
             + S              F   K           N    ++     +   T    +    
Sbjct: 784  SLNSIKIRNGNEMAPISQFVSIKKVYGPDVISRFNLYTAIKVMVAPASGYTSGQALQAIA 843

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAIT 698
                  L T    E+ G             G+I     + +Y+ +      +   L  + 
Sbjct: 844  EVAKESLPTGYGYELGGMAREEASTSGSSTGIIFILCFVFVYLLLSAQYESYILPLSVLL 903

Query: 699  T----LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRM 744
            +    L+       GF AL  I      +           A++ L+G    + +++ +  
Sbjct: 904  SVPFGLLGSFLFVNGFAALGNIPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFA 963

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPM 801
               +      +S            L   + TS+A  + ++P+ +  G             
Sbjct: 964  ---LDRRKQGMSISWAAVLGAAARLRPILMTSLAMIVGLIPLMLAMGVGAHGNRTLGASA 1020

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              G+++     IFI   + +     + K   I
Sbjct: 1021 IGGMLIGMIFQIFIVPVLFVVFQWLQEKFKPI 1052



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 6/211 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      LE V  K  E +P     N            I + I  +I + I
Sbjct: 288 IVYQMAGSNATETISDLEKVLAKAQESLPTGLNINIAQNANDFLFASIHEVIKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYIFLQDMRSTLIPAIAIPVALVATFFVLKLIGFSVNLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R+    +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SSREASIDAMSELGGAIVSITLVMMSVFIPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F I MA  I  +A +++ ++  +      
Sbjct: 466 RQFGITMAISIGFSALNALTLSPALCAIFLK 496


>gi|92118209|ref|YP_577938.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
 gi|91801103|gb|ABE63478.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
          Length = 1029

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 158/519 (30%), Gaps = 25/519 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              V      + + GF+    ++  +  +       +  Q Q++I +    +        
Sbjct: 47  VTTVYPGASPELMQGFITTPIEQAVASAEGVDYITSASTQSQSQIKVYVKLNFDPNAALT 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +  V   +  +    +++ +T +  +++    + D++   AI  S  + R     
Sbjct: 107 EVLSKVNSVRYLIPKEANDPVILKSTGETTAVMYIGFSSDELSGSAI--SDYLTRVVQPI 164

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +              +    DP ++     +T +++      N           + 
Sbjct: 165 LSTVDGVASADILGGQTFAMRVWLDPVKMAGRNVSTTEVAAAIAANNFQAAAGQTKGYYT 224

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +      +                    +  +    ++               ++   
Sbjct: 225 ISNVSTNTDL--------------------QNVEQFKRMTVKAKDGGFVRMEDIADVQLT 264

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                     +             Q +    +E    L   +     P     V   +  
Sbjct: 265 AQSTDASVAFSGQRAIFIGVQATPQGNPLNIVEGVRALFPDIERNLPPSMKMKVAYDSTK 324

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T      +V++V+F+ +   +  ++   +I L++I   AL+   G +  
Sbjct: 325 FITSSIHEVQKTLIEAVAIVIVVIFLFLASLRSVIIPVVTIPLSLIGVCALMMAAGFSFN 384

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  +VL IGL VD  I+V E I     + ++   +   G       +    IT    
Sbjct: 385 LLTLLAMVLAIGLVVDDAIVVVENIYRHIEEGKTPVQASLQGAREIVGPVVSMTITLAAV 444

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
              + F G   G   R FA T+  ++++S   A+++   M   ++++             
Sbjct: 445 YAPIGFLGGLTGALFREFAFTLAGAVIVSGVIALTLSPMMCSVLLKHGGQGWFATKVDKI 504

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           F  +      +  R+  +    ++        + F +  
Sbjct: 505 FTSVTHWYGRRLDRSLDYRPITALFAVTILGLVGFLYMN 543



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 102/314 (32%), Gaps = 15/314 (4%)

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
             AM +++   K              +  +       + + +    ++  +     +   
Sbjct: 181 TFAMRVWLDPVKMAGRNVSTTEVAAAIAANNFQAAAGQTKGYYTISNVSTNTDLQNVEQF 240

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +       G +++  +A+  +      +++       I        +   + +     
Sbjct: 241 KRMTVKAKDGGFVRMEDIADVQLTAQSTDASVAFSGQRAIFIGVQATPQGNPLNIV---- 296

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                  +   +++ +   + +    ++         E+ +  I  V I  + + +++  
Sbjct: 297 --EGVRALFPDIERNLPPSMKMKVAYDSTKFITSSIHEVQKTLIEAVAIVIVVIFLFLA- 353

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                  +  + T+ L +          G  FNL  + A++  IG  V+D +VV + +  
Sbjct: 354 --SLRSVIIPVVTIPLSLIGVCALMMAAGFSFNLLTLLAMVLAIGLVVDDAIVVVENI-- 409

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
             +      +      +   E +G  V  ++       P+   G   G++   FA  +A 
Sbjct: 410 -YRHIEEGKTPVQASLQGAREIVGPVVSMTITLAAVYAPIGFLGGLTGALFREFAFTLAG 468

Query: 804 GIVVAASSSIFIAA 817
            ++V+   ++ ++ 
Sbjct: 469 AVIVSGVIALTLSP 482



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/188 (12%), Positives = 63/188 (33%), Gaps = 8/188 (4%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGA 696
              + +         +        + +     + +      ++IY+ +          L  
Sbjct: 815  DFLEQQAKNLPKGFSHDYLADARQYVTEGNQLAIAFGFALIIIYLVLAAQFESLRDPLVI 874

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            + ++ + I+  L          N+     +LTLIG      +++ +   +        + 
Sbjct: 875  MISVPMAISGALIPLFFGVATINIYTQVGLLTLIGLISKHGILMVEFANE--LQLKEGLD 932

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVIGSFAIPMAF--GIVVAASSSI 813
             R  I+ +    L   + T+ A    +LP+    G      F+I +    G+++    ++
Sbjct: 933  KRSAIEMAARVRLRPILMTTAAMVTGLLPLLTASGAGAASRFSIGLVVVSGMMIGTMFTL 992

Query: 814  FIAAPILL 821
            F+   + +
Sbjct: 993  FVLPAVYV 1000


>gi|123441450|ref|YP_001005437.1| multidrug efflux system subunit MdtC [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|166233652|sp|A1JKW9|MDTC_YERE8 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|122088411|emb|CAL11203.1| AcrB/AcrD/AcrF family membrane protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 1024

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 73/584 (12%), Positives = 166/584 (28%), Gaps = 39/584 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +             +   + + +   +    +     +    
Sbjct: 28  GFSLLPVSPLPQVDYPVIM---------VSASMPGADPETMASSIATPLERALGRIAGVN 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +      +I L F  SR     A  V   L    S L                 + 
Sbjct: 79  EMTSTSSLGSTRIILQFDLSRDINGAARDVQAALNAAQSLLPSGMPNRPTYRKMNPSDAP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++    +        +       Q   +I  +E           L  +  E +PS L   
Sbjct: 139 IMI-MTLTSDTFSQGQLYDFASTQLAQKIAQTEGVSDVSVGGSSLPAVRVELNPSALFNQ 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +       N  +                          S        AN + KT
Sbjct: 198 GVSLDAVRQAISAANVRRPQGS--------------------IDSSEQHWQVQANDEIKT 237

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                NI   +  V +  +         + S +   +   T+
Sbjct: 238 AEGYRPLIIHYNNGSPVRLQDVANIVDSVQDVRNAGMSDGKPAVLLVISREPGANIIATV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        LRA         + +        S    + +  I   LV++V+F+ +  G+
Sbjct: 298 DRIRAELPALRASIPASIELNIAQDRSPTIRASLDEVERSLVIAVALVILVVFLFLRSGR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ +++I T   + L G +L   S+  + +  G  VD  I+V E I       
Sbjct: 358 ATLIPAVAVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFT 502
                +   G      T+   +I+ +   + L    G      R FA+T+ ++I IS+  
Sbjct: 418 VKPMVAALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVI 477

Query: 503 AISIVRAMMIFI------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           ++++   M   +       + ++++      L+        +       R+  V +    
Sbjct: 478 SLTLTPMMCAHLLRAQPTGKQQRIRGFGKVLLAIQQGYGRSLNWVLGHTRWVMVVLLSTI 537

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           ++     +      +     G +   + A++ +    ++  L+ 
Sbjct: 538 ALNVWLYISIPKTFFPEQDTGRMMGFIQADQSISFQAMQQKLKD 581



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 87/241 (36%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V + ++S+Q    +  +       LV  +    + +A    +     
Sbjct: 246 IHYNNGSPVRLQDVANIVDSVQDVRNAGMSDGKPAVLLVISREPGANIIATVDRIRAELP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S   N         R  + +    ++I+   +++ +++  +     L     
Sbjct: 306 ALRASIPASIELNIAQDRSPTIRASLDEVERSLVIAVALVILVVFLFLRSGRATLIPAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +    
Sbjct: 366 VPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPMV 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ + 
Sbjct: 423 AALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVISLTLT 482

Query: 817 A 817
            
Sbjct: 483 P 483



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     V++ +TE+   ST++       ++ ++ ++  +  ++ +   
Sbjct: 803  TISFNLPDGGSLSEATAAVERAMTELGVPSTVRGMFAGTAQVFQDTLKSQLWLIMAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     ++ RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALDAQRNGN--LNARDAIFQASLLRFRPILMTTLAALFGALPLVISSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + L+    R++ ++
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLYFDRLRSRFSK 1017


>gi|114565745|ref|YP_752899.1| acriflavin resistance protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336680|gb|ABI67528.1| acriflavin resistance protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 1034

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 79/662 (11%), Positives = 179/662 (27%), Gaps = 55/662 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + IL +++   G        L +  LD +P                         
Sbjct: 9   KRPVTMSILVAVVIIFGFFT-----LSKIPLDLYPEMKFPYA---------AVMTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    + + + L              + I + +      E+    +   +  
Sbjct: 55  GPEEVESQVSEPLEGILNTLSGVKEIQSQSTSGNSLILIKYDWGTNIESALMDIREKIGL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L    +K +++      + I+         I    +           ++       
Sbjct: 115 IEKSLPSGVEKPMVLKMDPTMMPIIQMGIRGGDKI-SLGQLQSIAEDVIEPRLSRIPEVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             + +  +  ++  E DP +L     T  +++    L                      +
Sbjct: 174 SVVITGGLEREIKVEVDPVKLEDYGLTLTQVNQVLQLE--------------------NF 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +       G       +    +    + +++         +      I           
Sbjct: 214 NLSGGKAREGEREYYVRSLQQFENLDDIRNVAILTPSGNSVYLNDIAMIEDAYKDDTQIT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            ++  +              +           V          S  I
Sbjct: 274 RVNGSKAVGIHCLKQSDANTVKACAAVREEMEEIMTELDLDLDYQVVMDQSSFINQSLDI 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K      A L ++VLF+ +  G+  L+   +I L++I T  L+ +  +TL L ++ G+ 
Sbjct: 334 TKRMMVEGALLAILVLFLFLRNGRSTLIVFTAIPLSIIATFILMYVNNSTLNLITMGGLA 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           LGIG  VD +I+V E I            +   G S   + +  S  T +     + F  
Sbjct: 394 LGIGRMVDDSIVVFENIYRHRSLGLPPMEAALTGASEVGNAVIASTTTIIAVFFPIMFAE 453

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK--------------SID 524
                  +  AIT+  +I  S+  A++IV  +   ++  K M+              +  
Sbjct: 454 GLASVLFKPLAITVSFAIFCSLMVALTIVPLLASRMLSDKAMQPLDPEKGRVSRVVFNFG 513

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               +        +       R     +++L       + F           G I + + 
Sbjct: 514 NWLDNLGERYKIILRWALGHRRHVVALVTLLMVGALALVPFIGAEFLPAMDAGEISITIE 573

Query: 585 ANRPV---DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++     D   V   +E+                    + +  G    Q  +   +  K
Sbjct: 574 NDKGTLLKDTEQVVEKVEAQLREVPEVFTIFSSVGSSASMFFDSGTKADQATIYIKLVPK 633

Query: 642 IT 643
             
Sbjct: 634 NE 635



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/202 (16%), Positives = 85/202 (42%), Gaps = 7/202 (3%)

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF- 692
            V++ ++ ++ +I   S          K   E      + +I++ I +   + I+++ +F 
Sbjct: 832  VMKDIQNEVDKINLPSGYSIEYGGQNKDMMESFTSLGIALILAIILVYAVMAIQYESFFN 891

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + ++       +    L    F+++A   V+ L+G  V + +V+ D ++   +L  
Sbjct: 892  PFVIMFSVPTAFIGVVLGLLLTNKAFSVSAFIGVIMLVGIVVANAIVLVDYLK---QLRE 948

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +   + I ++    L   + T+ A  +++ P+++    G       AI + FG++V+ 
Sbjct: 949  RGMERDEAIVEAGRVRLRPILMTAFATILAMFPLSLGIGEGAEADAPLAIVIIFGLLVST 1008

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
              ++ +   +     DW  K  
Sbjct: 1009 FITLILVPVVYSIFDDWGQKLK 1030



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 69/195 (35%), Gaps = 4/195 (2%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             V E +++ +TE+      Q        I++ L     + V  + +A+L+         
Sbjct: 298 AAVREEMEEIMTELDLDLDYQVVMDQSSFINQSLDITKRMMVEGALLAILVLFLFLRNGR 357

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L   T + L I  T     +     NL  +  +   IG  V+D +VV++ +    +  
Sbjct: 358 STLIVFTAIPLSIIATFILMYVNNSTLNLITMGGLALGIGRMVDDSIVVFENI---YRHR 414

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
           +  +   +      +E     + ++        P+    G     F  P+A  +  A   
Sbjct: 415 SLGLPPMEAALTGASEVGNAVIASTTTIIAVFFPIMFAEGLASVLF-KPLAITVSFAIFC 473

Query: 812 SIFIAAPILLFIYDW 826
           S+ +A  I+  +   
Sbjct: 474 SLMVALTIVPLLASR 488


>gi|221639263|ref|YP_002525525.1| Acriflavin resistance protein [Rhodobacter sphaeroides KD131]
 gi|221160044|gb|ACM01024.1| Acriflavin resistance protein [Rhodobacter sphaeroides KD131]
          Length = 1025

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 74/539 (13%), Positives = 148/539 (27%), Gaps = 39/539 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L S I  IGL            + ++P                         
Sbjct: 9   RRPVASTVLASFILLIGLYSIF-----NLPVRQYPEVEETVVT---------ITTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+        +  +         R   + +++        +    +V   +Q 
Sbjct: 55  SPDLIQGFITAPIARAVATTENIDYVTSQSRPSASVVSVQMKLGANSDVALTEVLAKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  + +  ++V  T    +++            A + +  + R    ++   E   
Sbjct: 115 VRGELPSEAEDPVIVKGTGDNFALMY--LAALNPNMSAEQMTEYLERVIRPRMSTIEGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     T +++       N           +   S   Q 
Sbjct: 173 EIQIIGAAEYAMRVWIDPMKLAARNVTASEVLTAIRASNFLSAPGRTEGEYFARSIKLQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +     G          ++    A      
Sbjct: 233 TLQTPEAFGA--------------------LPIRSQGDEVVRLRDVADVELASAEPDSIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T          + A         +   +      S   
Sbjct: 273 TFNGQPGTFIGIFPTPAANPLTTAAAVIEELPAINATLPRGMEINLVYDSTETITASIYE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +V++V+ + +   +  L+   +I L++I   A+L  LG ++ L S+  +V
Sbjct: 333 VFKTLAEAVAIVVVVILLFLGSFRSVLMPIVTIPLSLIGVCAVLLALGYSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +  S + +   G       +    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIDEGMSPYHAALKGMREITGPVIAMTITLAAVLAPLGFSG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
              G     FA  +  S++IS   A++I   M   +++                   + 
Sbjct: 453 GLTGSLFAEFAFALAGSVIISGVVALTITPMMSARLLKAGTGSRFQRIVDHTLEGTANW 511



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ L +          G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLMPIVTIPLSLIGVCAVLLALGYSINLLSLLAMVLAIGLVVDDAIVVVENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +S      K + E  G  +  ++     + P+   G   GS+   FA  +A
Sbjct: 411 ---RHIDEGMSPYHAALKGMREITGPVIAMTITLAAVLAPLGFSGGLTGSLFAEFAFALA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++   ++ I  
Sbjct: 468 GSVIISGVVALTITP 482



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++    + + + + +  +F+ +      + ++ L I   +    L     N+     ++T
Sbjct: 849  LLAFAAAVVVIYLVLAAQFESFRDPFIIMMSVPLSIFGAILPLNLGLGTLNIYTQVGLIT 908

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG      +++ +    N +     ++ R  I  +    L   + T+ A  ++V+P+ +
Sbjct: 909  LIGLITKHGILMVE--FANQQREEHGLNRRQAIVAAAKVRLRPILMTTAAMALAVVPLII 966

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G     +  I +  G+++    ++F+      FI  
Sbjct: 967  AEGAGAEARQAMGIVIFTGLLIGTCFTLFVVPMFYTFISK 1006


>gi|332558286|ref|ZP_08412608.1| Acriflavin resistance protein [Rhodobacter sphaeroides WS8N]
 gi|332275998|gb|EGJ21313.1| Acriflavin resistance protein [Rhodobacter sphaeroides WS8N]
          Length = 1025

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 74/539 (13%), Positives = 148/539 (27%), Gaps = 39/539 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L S I  IGL            + ++P                         
Sbjct: 9   RRPVASTVLASFILLIGLYSIF-----NLPVRQYPEVEETVVT---------ITTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+        +  +         R   + +++        +    +V   +Q 
Sbjct: 55  SPDLIQGFITAPIARAVATTENIDYVTSQSRPSASVVSVQMKLGANSDVALTEVLAKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  + +  ++V  T    +++            A + +  + R    ++   E   
Sbjct: 115 VRGELPSEAEDPVIVKGTGDNFALMY--LAALNPNMSAEQMTEYLERVIRPRMSTIEGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     T +++       N           +   S   Q 
Sbjct: 173 EIQIIGAAEYAMRVWIDPMKLAARNVTASEVLTAIRASNFLSAPGRTEGEYFARSIKLQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +     G          ++    A      
Sbjct: 233 TLQTPEAFGA--------------------LPIRSQGDEVVRLRDVADVELASAEPDSIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T          + A         +   +      S   
Sbjct: 273 TFNGQPGTFIGIFPTPAANPLTTAAAVIEELPAINATLPRGMEINLVYDSTETITASIYE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +V++V+ + +   +  L+   +I L++I   A+L  LG ++ L S+  +V
Sbjct: 333 VFKTLAEAVAIVVVVILLFLGSFRSVLMPIVTIPLSLIGVCAVLLALGYSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +  S + +   G       +    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIDEGMSPYHAALKGMREITGPVIAMTITLAAVLAPLGFSG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
              G     FA  +  S++IS   A++I   M   +++                   + 
Sbjct: 453 GLTGSLFAEFAFALAGSVIISGVVALTITPMMSARLLKAGTGSRFQRIVDHTLEGTANW 511



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ L +          G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLMPIVTIPLSLIGVCAVLLALGYSINLLSLLAMVLAIGLVVDDAIVVVENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +S      K + E  G  +  ++     + P+   G   GS+   FA  +A
Sbjct: 411 ---RHIDEGMSPYHAALKGMREITGPVIAMTITLAAVLAPLGFSGGLTGSLFAEFAFALA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++   ++ I  
Sbjct: 468 GSVIISGVVALTITP 482



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++    + + + + +  +F+ +      + ++ L I   +    L     N+     ++T
Sbjct: 849  LLAFAAAVVVIYLVLAAQFESFRDPFIIMMSVPLSIFGAILPLNLGLGTLNIYTQVGLIT 908

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG      +++ +    N +     ++ R  I  +    L   + T+ A  ++V+P+ +
Sbjct: 909  LIGLITKHGILMVE--FANQQREEHGLNRRQAIVAAAKVRLRPILMTTAAMALAVVPLII 966

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G     +  I +  G+++    ++F+      FI  
Sbjct: 967  AEGAGAEARQAMGIVIFTGLLIGTCFTLFVVPMFYTFISK 1006


>gi|320154902|ref|YP_004187281.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Vibrio vulnificus MO6-24/O]
 gi|319930214|gb|ADV85078.1| RND multidrug efflux transporter/ Acriflavin resistance protein
           [Vibrio vulnificus MO6-24/O]
          Length = 1039

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 68/547 (12%), Positives = 162/547 (29%), Gaps = 39/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSQSVLGKSTITVNMKLNTDPNAALADILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTINGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGLKYALRVWLDPAKMGALRLTATDVMGVLNANNYQSATGQVTGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                     ++                 +    +  +   
Sbjct: 233 QVSNVQELE--------------------NLVVKSGDGEVIRLGDIAKVTLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLELLPQLERNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VVKTIVEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  S+ +S   A+++   M   +++  +  S     +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKAHEKPSKFEEKVHHVLDGMTNR 512

Query: 539 AIQFMRA 545
             + ++A
Sbjct: 513 YEKMLKA 519



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +                   E            + +     +  +  ++   +
Sbjct: 251 EVIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELLPQLERNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + +  ++ +A+ +L+ I +    +   +  I T+ L + 
Sbjct: 311 PSNIKMNVMYDSTIAINESIHEVVKTIVEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +     K ++
Sbjct: 488 MLKAHEKPSK 497



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 82/785 (10%), Positives = 221/785 (28%), Gaps = 40/785 (5%)

Query: 74   SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
              EL + + K G G   + ++ +   ++   S      +      +    +        N
Sbjct: 237  VQELENLVVKSGDGE--VIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPIN 294

Query: 134  LLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISESTIQRLGSH 187
            +     E    +   + S   ++ +    I  +    E+++  ++   I    I      
Sbjct: 295  IAADVLELLPQLERNLPSNIKMNVMYDSTIAINESIHEVVKTIVEAAVIVLVVITLFLGS 354

Query: 188  RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
               + +P    P  L  +      M F       +    +  +  + D         D+ 
Sbjct: 355  FRAVIIPIVTIPLSLIGVAMVMQAMGFSW--NLMTLLAMVLAIGLVVDDAIVVLENVDRH 412

Query: 248  EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
               G     A      +   PV+ ++           +     G            +  V
Sbjct: 413  IKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFV 472

Query: 308  INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                  +    +                +   +   +    E+ + A +    +  G   
Sbjct: 473  SGIIALTLSPMMCSKMLKAHEKPSKFEEKVHHVLDGMTNRYEKMLKAVMDHRPVVIGFAL 532

Query: 368  IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG---IVLGI 424
            IV G + ++   I             + +    + A L  L  T+   +        +  
Sbjct: 533  IVFGTLPVLFKFIPSELAPSEDKGVVMLMGTGPSNANLDYLQNTMNDVNKILSDQPEVEF 592

Query: 425  GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
                      N+       K  S   +     S+A  T     + + +  + +  F    
Sbjct: 593  AQVFTGVPNSNQAFGLATLKPWSQREA-----SQAEITKRVGGLVSNVPGMAVTAFQMPE 647

Query: 485  VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
            + G    + +  +I+   +   +  +   I+       + +            + I+  +
Sbjct: 648  LPGAGSGLPIQFVITTPNSFESLYTIASDILTEVTSSPLFVYSDLDLKYDSATMKIKIDK 707

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI---QLGVLANRPVDLSVVRSNLESL 601
             +    G+++     ++  +   G    ID  G        V     ++   +++     
Sbjct: 708  DKAGAYGVTMQDIGITLGTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMKNYYVRA 767

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---------- 651
              G           + +   +  P  +   +  +  V    T +                
Sbjct: 768  ADGKAVPLGSLITIDVIAEPRSLPHFNQLNSATVGAVPSPGTAMGDAINWFENIASSKLP 827

Query: 652  --QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               N + +G           +     ++   + + + I+F+     +  + ++ L I   
Sbjct: 828  TGYNHDYMGEARQFVTEGSALYATFGLALAIIFLVLAIQFESIRDPIVIMVSVPLAICGA 887

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L   A      N+ +   ++TL+G      +++ +  ++       S    D + ++   
Sbjct: 888  LIALAWGLATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKRSR--IDAVMEAAKV 945

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++ 
Sbjct: 946  RLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLA 1005

Query: 825  DWRAK 829
            +    
Sbjct: 1006 EKHKP 1010


>gi|189485576|ref|YP_001956517.1| protein translocase subunit SecD [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170287535|dbj|BAG14056.1| protein translocase subunit SecD [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 475

 Score =  151 bits (381), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 151/407 (37%), Positives = 229/407 (56%), Gaps = 29/407 (7%)

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           S  N    +  A+ +++EIIR RIDQ G++E  I + G   I+IQLPG +DP   + L+G
Sbjct: 69  SHLNGAVKVKDAVSRAIEIIRNRIDQFGVTEPMIAKQGDKWIVIQLPGIKDPKAAKDLIG 128

Query: 208 TTAKMSFHKVLP----------------------------NNSKKGFMFGVRFLRDSDGN 239
            TA + F  V                               + K     G          
Sbjct: 129 KTALLEFRIVNTSEEARQVLDLIYEKRITPVQYRENSSAYPDIKAVMPEGASVFESRSNM 188

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
            Y V DK  ++G  L  A   F  +  + +V I F+  G + F  +T  NIGK LA+VLD
Sbjct: 189 DYYVLDKALLTGAALANAKVEFGGEYGQMMVSIEFNRDGGKIFEYITERNIGKSLAIVLD 248

Query: 300 GRVLTAPVINQ-AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           G V +APVI        +A I GNF  E A +LAA+LRAG+LP+ + ++EER VG  LG 
Sbjct: 249 GIVQSAPVIRTRISRGERASIEGNFNSEDAKVLAAVLRAGALPVPVRLIEERTVGPSLGD 308

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           DSI KG  + + G+VL+ LFM + Y   GL+AD ++ LN+I+ +A+++ L  TLTLP +A
Sbjct: 309 DSIKKGFMSSLIGIVLVFLFMFIYYRSSGLIADVALSLNLIILMAIMAYLKFTLTLPGVA 368

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GI L + ++VD+N+L+ ERIREE    ++   ++D G+ + + TIFD+N T LIA + LF
Sbjct: 369 GIALTLAMSVDANVLILERIREEIAVGKTAKMAVDAGYQKVFWTIFDANFTTLIAALFLF 428

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            FG G ++GFA+T+ + +++SMFTA+++ + +  F+ +   +  I I
Sbjct: 429 QFGAGPIKGFAVTLSIGLIVSMFTAVTVTKLIYEFLFKKNLLLKIKI 475



 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 78/172 (45%), Gaps = 4/172 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I+KG +  +I  + + ++++I ++    L A   L L++   +   A   
Sbjct: 301 TVGPSLGDDSIKKGFMSSLIGIVLVFLFMFIYYR-SSGLIADVALSLNLIILMAIMAYLK 359

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  VA +   +  SV+  V++ +R+R+ + +     + +  +D    +        
Sbjct: 360 FTLTLPGVAGIALTLAMSVDANVLILERIREEIAV---GKTAKMAVDAGYQKVFWTIFDA 416

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +    I+ L +  +G   I  FA+ ++ G++V+  +++ +   I  F++   
Sbjct: 417 NFTTLIAALFLFQFGAGPIKGFAVTLSIGLIVSMFTAVTVTKLIYEFLFKKN 468


>gi|218532045|ref|YP_002422861.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
 gi|218524348|gb|ACK84933.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium chloromethanicum CM4]
          Length = 1043

 Score =  151 bits (380), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 84/652 (12%), Positives = 195/652 (29%), Gaps = 35/652 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   G L  L     +  + +FP  +P      G         +     
Sbjct: 9   RPRLAIVIALIITIAGGLALL-----RIPVAQFPDIVPPQVSVSG---------MYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +     + +      +     +  + +SF      +     V   +Q 
Sbjct: 55  AEVVEASVAQPLEAQVIGVDRMIYMKSTSANDGSYSLAVSFDLGSDPDINTVSVNNRVQS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   L    +    ++ +    +      +  +   I   +D+I  +    
Sbjct: 115 ALSQLPSEVQLQGLKVQKKSSAILLFAVLYSETGAQDPLFITNYAIINVLDEISRTAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     R+   +    D  RL  L    + +       +        G   +      Q 
Sbjct: 175 QANLFARMNYSMRIWFDTDRLTSLTLAPSDVVDAIRAQSVQAPVGRIGAPPITSEQQIQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ +  +S                +    +                 +           
Sbjct: 235 NVQTQGRLS-------------TPAQFGAIVLRTNSDGSVVRIRDVARVELSAQSFDSES 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T          L A        +V   +      + S 
Sbjct: 282 RLDGRPGVPVAIYLVPGANAVRTATAVKATLEKLSARFPAGLRYVVVHDSTTFVKDTISE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV+IV+F+ +   +  ++   ++ +++I T A+L +LG +    S+  +V
Sbjct: 342 VLRTLAEAFVLVVIVVFLFLGNLRATVIPAIAVPVSLIGTFAVLYVLGYSANTVSLLAMV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     ++   S   +  +  ++  + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEHPELSPAEATKLAMTQITAPIIAITLVLLSVFVPIAF 461

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R FA+T+  ++LIS   A+++  A+    +R  + +   +  +        
Sbjct: 462 IPGVSGTLFRQFAVTISAAMLISAINALTLSPALCGVFLRPARARRGIMGRVLNGIDWVR 521

Query: 537 CIAIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +R   R   + + ++          +     G   +       ++ +  D + V
Sbjct: 522 DRYAGGVRRLVRVSALSLVLVLLFAGGIFGLSRITPAGFLPEEDQGAFFVSVQLPDGASV 581

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                     +   ++  G    L  + +   D  A+     +V +      
Sbjct: 582 ARTSAVAAEVERLLKDMPGVNQVLAIVGFSLLDGAAEPNSAFLVAQLKPFAD 633



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/438 (9%), Positives = 129/438 (29%), Gaps = 21/438 (4%)

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            +           +  A + N        +     +S   S      RAY+         +
Sbjct: 601  VNQVLAIVGFSLLDGAAEPNSAFLVAQLKPFADRRSAAESAGALIGRAYAAAATIGQATV 660

Query: 472  IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
            +   +    G     GF   +            ++VR ++    R  ++  +     +  
Sbjct: 661  LPFNLPPIVGLSTSGGFEYVLEAREGQDPAATDAVVRGLVAAANREPQLARVFSTFTASN 720

Query: 532  FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
              I   I     +     +         ++  ++ +  N        + +   A+   D+
Sbjct: 721  PSIFLDIDRTKAQVLGLAMSDVFSSLQATLGGVYVNNFNLYGR-TWQVNVEGEADNRGDI 779

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLV-----------RLQYQPGDSVAQTRVLEMVKK 640
              + +       G +        +  ++           R     G           +  
Sbjct: 780  RDIWNIYVRGASGQMVPVRSVASERIVLGPQVLTRYNNFRAVSVNGSPAPGISSGAAMAA 839

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY---IWIRFKWYFALGAI 697
                         +        +E    G   +++    +  Y   + +   W   +  +
Sbjct: 840  MEQISDRTLPEGYSYEWTGTAYQEQQASGQTWIVLGLAFLFAYLFLVALYESWTIPIPVL 899

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             ++++    +     L G+  +L +   ++ LI  +  + +++ +  +   +     +  
Sbjct: 900  LSVVVGAFGSYLAVKLAGLSLDLYSEIGLVVLIALAAKNGILIVEFAKDQREA---GVPI 956

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIF 814
            R+   +   +     + TS+A  + ++P+ +  G+           +  G++ A+S  IF
Sbjct: 957  REAAIRGAEQRFRAVMMTSIAFILGLVPLVIATGAAQISRRDVGTAVFGGMIAASSIGIF 1016

Query: 815  IAAPILLFIYDWRAKNAR 832
            +   + + +   R + ++
Sbjct: 1017 LVPMLYVTVQTLRERVSK 1034



 Score = 44.3 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 18/136 (13%), Positives = 55/136 (40%), Gaps = 10/136 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRK 746
               +     + + +  T     + G   N  ++ A++  IG  V+D +VV    +R+ +
Sbjct: 364 LRATVIPAIAVPVSLIGTFAVLYVLGYSANTVSLLAMVLAIGIVVDDAIVVVENVERVME 423

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
                   +S  +    ++ +     +  ++      +P+A   G        FA+ ++ 
Sbjct: 424 E----HPELSPAEATKLAMTQITAPIIAITLVLLSVFVPIAFIPGVSGTLFRQFAVTISA 479

Query: 804 GIVVAASSSIFIAAPI 819
            ++++A +++ ++  +
Sbjct: 480 AMLISAINALTLSPAL 495


>gi|296447344|ref|ZP_06889271.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
 gi|296255123|gb|EFH02223.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
          Length = 1046

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 65/525 (12%), Positives = 144/525 (27%), Gaps = 38/525 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+L      +       FP+     R              L    
Sbjct: 10  RPVATSLLSLAVLLFGVLGFFRLSVSPLPQVDFPTIQVTTR--------------LPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              ++ITL F   R  +  A  V   +   
Sbjct: 56  PDTMASLVTASLERQLGQIPSLQTMSSLSSFGLSQITLQFELDRDIDAAAQDVQSAINSA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L        +        + +++   +    +   + S         ++  +     
Sbjct: 116 ASTLPRTLPYPPVYAKVNPADTPIVT-LTLRAKNAGMRQLSDLADTLIAPKLSQTRGVGH 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +   +  E D +RL     +  ++                         G    
Sbjct: 175 VAVEGGVRPAVRIEADLARLAANRMSMEELRAAIA--------------------GANVA 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                           AN      +    +                ++   L     G  
Sbjct: 215 GAKGALDGPYQAYTLDANDQLVAARQYETVVVAYRNGAPIMLRDVADVVDGLEDARVGGW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T+E        +R          V          S    
Sbjct: 275 YRGEPAIILDVQRQPGANIIDTVERLNEALPDIRRTLPEGATLDVVSDRTQTIRASIEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+ + +   +  L+A  S+ L+++ T A++++ G +L   S+  + +
Sbjct: 335 ETTLVIATGLVVLVVLLFLRSWRATLIAGVSLPLSIVATFAVMAVAGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           G G  VD  I++ E I       +S   +   G      T+    ++ +   + L F   
Sbjct: 395 GAGFVVDDAIVMIENIVRNMELGKSPHRAALDGAREIAFTVVSLTVSLVAVFIPLLFMTG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
             G   R FA+T+   +++S   ++++   +    ++        
Sbjct: 455 LVGRMFREFALTLTAQVVVSAIVSLTLTPMLCAKWLKPGHAHERH 499



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L A  +L L I  T    A+ G   +  ++ A+    G+ V+D +V+ + + 
Sbjct: 352 FLRSWRATLIAGVSLPLSIVATFAVMAVAGFSLDNLSLMALTIGAGFVVDDAIVMIENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
             ++      S          E     V  +++     +P+    G V      FA+ + 
Sbjct: 411 --VRNMELGKSPHRAALDGAREIAFTVVSLTVSLVAVFIPLLFMTGLVGRMFREFALTLT 468

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             +VV+A  S+ +   +      
Sbjct: 469 AQVVVSAIVSLTLTPMLCAKWLK 491



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 82/202 (40%), Gaps = 8/202 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +E + +    I   S+I           ++ +      ++ +AIA+ + + + ++ Y 
Sbjct: 821  DAVEAIARAEERIGLPSSIIGLFSADAAEFQKSLASEPWLILAAAIAIYVVLGVLYESYA 880

Query: 693  ALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                + T +    +   L   A  G++ +L A+  V+ L+G    + +++ D        
Sbjct: 881  HPFTVLTTLPSAGVGALLALMA-TGLDMSLVALIGVVLLMGIVKKNAIMIIDFALD--AE 937

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                +S ++ I ++        + T++AA    LP+A     G  +     + +  G+++
Sbjct: 938  RGERLSAKEAITRACRLRCRPILMTTLAALFGALPLAFAHGPGSELRIPLGVAIIGGLLL 997

Query: 808  AASSSIFIAAPILLFIYDWRAK 829
            +   +++    I L +  +R +
Sbjct: 998  SQILTLYTTPVIYLAVERFRLR 1019


>gi|156972808|ref|YP_001443715.1| multidrug efflux pump [Vibrio harveyi ATCC BAA-1116]
 gi|156524402|gb|ABU69488.1| hypothetical protein VIBHAR_00480 [Vibrio harveyi ATCC BAA-1116]
          Length = 1040

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 76/609 (12%), Positives = 173/609 (28%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S     + IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSSSVLGTSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPAKMGALKLTATDVMTVLNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                      +                 +    +  +   
Sbjct: 233 QVSNVAELEA--------------------LVVKTGEGDVIRLGDIAKVTLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 NANGQEAVVAAINAAPSANPINISADVLKLLPQLERNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ +S   A+++   M   +        K  + +          
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSKMLRANEEPSKFEQKVHHVLDGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +               I+F+   I   F        + KG + L   A    +L  
Sbjct: 513 YAKMLTAVMAHRPVIIAFAIIVFTTLPILFKFIPSELAPSEDKGVVVLMGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +   +  + 
Sbjct: 573 IEHTMRDVN 581



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 85/250 (34%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +                   E            + +  +  +  +  ++   +
Sbjct: 251 DVIRLGDIAKVTLEKSHDIYRANANGQEAVVAAINAAPSANPINISADVLKLLPQLERNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + +  ++ +A+ +L+ I +    +   +  I T+ L + 
Sbjct: 311 PSNIKMNVMYDSTIAINESIHEVVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +     + ++
Sbjct: 488 MLRANEEPSK 497



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 68/183 (37%), Gaps = 7/183 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     +  + ++ L +   L 
Sbjct: 830  YNHDYMGEARQFVTEGSALYATFGLALAIIFLVLAIQFESIRDPIVIMVSVPLAVCGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++        +S  D + ++    L
Sbjct: 890  ALAWGTASMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAVMEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++ + 
Sbjct: 948  RPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLAEK 1007

Query: 827  RAK 829
               
Sbjct: 1008 HKP 1010


>gi|312881085|ref|ZP_07740885.1| acriflavin resistance protein [Aminomonas paucivorans DSM 12260]
 gi|310784376|gb|EFQ24774.1| acriflavin resistance protein [Aminomonas paucivorans DSM 12260]
          Length = 1035

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 53/570 (9%), Positives = 143/570 (25%), Gaps = 40/570 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   + C +G+         +  +  +P       +          +      
Sbjct: 9   RRPVFTWVTVLLACFLGVYS-----YFKLGVALYPKVDIPVVV---------VYAAYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++          +    +                V+  ++ 
Sbjct: 55  SPGEIEQLVAKPLEDAVSKVEGVKKIESYSLEGFCYVVAELFYEVDLNQATLDVSNKVKE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  D  +  +        S +            A +       Q + Q+       
Sbjct: 115 TREKLPKDADEPTVEKVDINADSFMKVVFTSPLPPKQARDILD---DQVVRQLTRVTGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++    DP  L+    +  +++                         N  
Sbjct: 172 EVDLAGGQEREIHLLLDPRALKSYGVSIQRVAALIAA--------------------NNV 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G          +    + + +I                 I   +  V    
Sbjct: 212 TNPSGYIAQGDREITLRFKGEAPAVQALGEIRVPLQNGASVRLSALGRIEDGIKDVRRLT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +              +           V   +      +   
Sbjct: 272 RYDGEDAFLIYVKARPNANVVNVGRDVRKALDRILPTLPGGFKMDVAFDDSEFIRDAVKN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   L  +VL++ +      LV   ++   V+ T   +   G TL + S  G+ 
Sbjct: 332 VLRDMVVGTLLTGLVLYLFLRRLSATLVVALAMPAAVLATFVPMVGQGFTLNVMSTLGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + +G+ V+++ILV E +            + + G      ++  +  T L   + + F  
Sbjct: 392 ITMGVLVNNSILVLENVYRYRDLGYEPLDAAEKGTGEIAISVLATTATNLGVFLPVAFVP 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  +  +A+T+  S + S++ ++++   +   I+  K+   +       +  +    
Sbjct: 452 GVAGQFLEQYALTIVYSTVFSLWVSLTVTPMVAARIMGAKEPSRVSRFLCGWWTWLYQGF 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHG 568
                      V       +  + L     
Sbjct: 512 EDLHHVLITRTVLHPWKTVLFFLALTGGCF 541



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 75/214 (35%), Gaps = 7/214 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                           +       ++K I +I      +       +  RE      +   
Sbjct: 796  DRLRTVTVEGDVVGRSVGEAFGDIQKGIADIPLPPGYRFLFEGEAEDMRETFTDMGIAFA 855

Query: 675  ISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++     + I  I   W FA   + T+ L     +    +     +L  +  ++ L+G  
Sbjct: 856  LAVAITFLMIAAILESWAFAAIIMLTVPLSAIGVIPALVMTDTTMSLYGLMGMVMLVGLV 915

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +VV D   + ++     ++    I ++    L   V     + I+++P+A+    G
Sbjct: 916  VNNAIVVID-YAEVLRKG--GMTPSKAIVEACGVRLRSIVMADATSIIAMIPLAIGSGDG 972

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            G +    AI    G+V   + ++F   P+    +
Sbjct: 973  GEMRAPMAIVAIGGLVAGGTLALFAIPPVYKLYW 1006



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 84/246 (34%), Gaps = 9/246 (3%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I++ +     V LS +    + ++      +    +   +        + V   R + 
Sbjct: 240 GEIRVPLQNGASVRLSALGRIEDGIKDVRRLTRYDGEDAFLIYVKARPNANVVNVGRDVR 299

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +I   +P     +      +  R+ ++  +  +++  +   + +++  +   +   
Sbjct: 300 KALDRILPTLPGGFKMDVAFDDSEFIRDAVKNVLRDMVVGTLLTGLVLYLFLR-RLSATL 358

Query: 697 ITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
           +  L +   +  T       G   N+ +   +   +G  VN+ ++V + +    +     
Sbjct: 359 VVALAMPAAVLATFVPMVGQGFTLNVMSTLGLAITMGVLVNNSILVLENV---YRYRDLG 415

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASS 811
               D  +K   E     + T+       LP+A      G  +  +A+ + +  V +   
Sbjct: 416 YEPLDAAEKGTGEIAISVLATTATNLGVFLPVAFVPGVAGQFLEQYALTIVYSTVFSLWV 475

Query: 812 SIFIAA 817
           S+ +  
Sbjct: 476 SLTVTP 481


>gi|90410656|ref|ZP_01218671.1| putative multidrug resistance protein [Photobacterium profundum
           3TCK]
 gi|90328287|gb|EAS44585.1| putative multidrug resistance protein [Photobacterium profundum
           3TCK]
          Length = 1043

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/649 (9%), Positives = 170/649 (26%), Gaps = 42/649 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G++        +  +   P                         
Sbjct: 9   KRPVVAIVLSLLLCVFGMVS-----FSKLAVREMPDVENPVVT---------VMTNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +          R   ++IT+ F+           +   +  
Sbjct: 55  SATVMESQVTSPIEDELSGISGIDNITSVTRNGMSRITIEFSMDWDLTEGVSDIRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            N  L  +    ++          +       +      + +    R   D+  +     
Sbjct: 115 ANRSLPDEADDPVVSKDNGSGEPAIYINLTSSE--MDRTQLTDYAQRVLEDRFSLINGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P+ +     TT  +                          N  
Sbjct: 173 SVSLSGALYKVMYVKLKPALMAGRGVTTKDIVDTLQDE-------------------NIE 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   +V      ++  TA            +          +     +I           
Sbjct: 214 LPGGEVRNDATVMSVRTARLYLSPEDFDYLVIRTADDGTPVYLKDVADIDVGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +     +        ++         +V+         S S 
Sbjct: 274 KSDGVANLSLGIVTMSDANPLNVAKDVHAEVDRMQQFIPAGTTLLVDYDATVFIDRSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I   LV++VL++ +   +  L+   ++ +++I        LG ++ L ++  ++
Sbjct: 334 VYSTLLITGALVILVLYIFIGQARATLIPAVTVPVSLISAFISAYFLGFSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     K +S   +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENMFHHLEKGESPLLAAYKGTREVGFAVVATTAVLVMVFLPISFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAM---MIFIIRYKKMKSIDINPLSRFFLIP 535
           G        F++ + +S++ S   A+++   +   M+         ++ I+         
Sbjct: 454 GMVGRLFTEFSVLLAMSVIFSSIIALTLTPVLGSKMLKANVKPGRFNLWIDSQFTKLENG 513

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +     R +     +   + +   L           +    L     +  + +   
Sbjct: 514 YRSVVSMAVKRRYFAPFIVAGCMAASYGLMQIVPAQLAPQEDRGVL-FAFVKGAEGTSYN 572

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             + ++   +       G+          P            V  ++ +
Sbjct: 573 RMIGNMDEVEQRLLPMLGKGMLKSVSIQTPAFGGRAGDQTGFVIMQLED 621



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 85/260 (32%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L +          ++   +     +     F  +    + L            V + V  
Sbjct: 243 LVIRTADDGTPVYLKDVADIDVGAENENSTFKSDGVANLSLGIVTMSDANPLNVAKDVHA 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++  +        T +V    +  + R        + +  + + +++YI+I  +    L 
Sbjct: 303 EVDRMQQFIPAGTTLLVDYDATVFIDRSISEVYSTLLITGALVILVLYIFI-GQARATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +          G   NL  + A++  IG  V+D +VV + M           
Sbjct: 362 PAVTVPVSLISAFISAYFLGFSINLLTLMALILSIGLVVDDAIVVVENM---FHHLEKGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSS 812
           S      K   E     V T+    +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 SPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGRLFTEFSVLLAMSVIFSSIIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVLGSKMLKANVKPGR 498



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 78/232 (33%), Gaps = 8/232 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +  ++      +    +K   + L+    D       L+ + ++  +I+P     N  
Sbjct: 781  DTVTKIEEIASPQRLSHTDKQKSITLKGNLNDGYTLGNALDFLDQQAIDILPSDITINYS 840

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                           +   ++ +   + +  +F+ +   L  + T+ + I   +    + 
Sbjct: 841  GESKDFREN-QSDIFMVFGLALLIAYLVLAAQFESFINPLVVMLTVPMGIFGGMAGLWIM 899

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ +   ++ LIG    + +++ +      +L    I F   I  +    L   + 
Sbjct: 900  GQGLNIYSQIGMIMLIGMVTKNGILIVEFAN---QLRDKGIEFEQAIVDASVRRLRPILM 956

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            T+       +P+ +    G     +    + FG+  A   ++ +   +   +
Sbjct: 957  TAFTTLFGAIPLIMSTGAGSESRMAVGTVVFFGMAFATLVTLLVIPAMYRLL 1008


>gi|294791937|ref|ZP_06757085.1| hydrophobe/amphiphile efflux-1 family protein [Veillonella sp.
           6_1_27]
 gi|294457167|gb|EFG25529.1| hydrophobe/amphiphile efflux-1 family protein [Veillonella sp.
           6_1_27]
          Length = 1060

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 80/667 (11%), Positives = 181/667 (27%), Gaps = 34/667 (5%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +GL+  +        + R+P   P              +          VN  +    
Sbjct: 20  TLVGLISMM-----NLPIARYPQISPPTVR---------VNTAYTGATAQVVNDTVASVI 65

Query: 75  DELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           +     ++       S     +  +T+ F      +         +Q   ++L  + +  
Sbjct: 66  ETQIVGVQDMDYMTSSSSSNGSYSLTVQFNQGTDADMDTVNTQNRVQAALAQLPAEVQAV 125

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            + TT       ++   N       +           +D I   +              +
Sbjct: 126 GVTTTKSSGDMAMVFSLNSPDGTYDSTFLKNYSTNYMMDAIKAIKGVGSVQEFGS-DYAM 184

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP++++ L  T ++++      N        G          QY ++ +  +    
Sbjct: 185 RIWLDPAKMQNLGVTISEVTAAIKGQNLQAAAGTVGQNPTNGEQAFQYPIKIEGRL---- 240

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                      T +   +I+      +         I                 +     
Sbjct: 241 ----------VTPEQFGNIAIKSSNGKVLHLKDVARIQIGAKGYDFIAKSAHKEVAGFAI 290

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
           S +   +   TI     +         P     V   N      S    + T      LV
Sbjct: 291 SLQNDANALETIANVKKVLDEQSKSFPPDMQYNVVVDNTKFVSASIKEVEHTFVEALLLV 350

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           LIV+++ +   +  ++   ++ ++++ T     LL  ++   ++  +VL IGL VD  I+
Sbjct: 351 LIVVYVFLQSWRSTIIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIV 410

Query: 434 VNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           V E +  E          +           +       +   V + F GG      + FA
Sbjct: 411 VVEAVEYELKYNGLPPKEAAIKAMENVQGPVIGIAFVLVAVFVPVAFMGGMTGILYKQFA 470

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +T+ +S++IS   A+ +  A+   +++    K  +     +       +           
Sbjct: 471 LTIAVSVVISAIVALVLTPALCATMLKPHTPKEREDWVHRQLNKFNAGLERFSNWYGIQL 530

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
             +S   S+  I LL   G    +            +    +  V     S     ++  
Sbjct: 531 ARLSHRLSLTVIALLIFAGGTGLVFHFLPTSFVPAEDSGYYMIAVNEPPGSTSERTMATL 590

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                         +P D      V  +    +      S+                +  
Sbjct: 591 EKIASFLEGKNDPEKPKDEQLFQEVFTVAGFDLLGGGQKSSAGVIFATMSDWKYRTTQAT 650

Query: 670 IVGVIIS 676
            +  ++ 
Sbjct: 651 SINAMVG 657



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  +  + + +  T G F L     N   + A++  IG  V+D +VV + +    
Sbjct: 360 SWRSTIIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIVVVEAV--EY 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +L    +  ++   K++    G  +  +       +P+A  GG        FA+ +A  +
Sbjct: 418 ELKYNGLPPKEAAIKAMENVQGPVIGIAFVLVAVFVPVAFMGGMTGILYKQFALTIAVSV 477

Query: 806 VVAASSSIFIAAPI 819
           V++A  ++ +   +
Sbjct: 478 VISAIVALVLTPAL 491



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 65/167 (38%), Gaps = 12/167 (7%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF------NL 720
            + I+ + +  + + + +   ++ W      + ++   +        L           ++
Sbjct: 881  QTIMILGLGLVFVFLILAALYESWKVPFAVLFSVPSGMIGASLVPFLLNFTGRYSLANDI 940

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 +LTL+G +  + +++ +  +  +++    ++  D   ++    L   + TS A  
Sbjct: 941  YMQIGLLTLVGLAAKNAILIIEYAK--IRVDERGMNVVDAAIEAAKIRLRPILMTSFAFI 998

Query: 781  ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            + VLP+AV    G     S  I +  G+  A    IFI   + + I 
Sbjct: 999  LGVLPLAVSTGAGSGARTSMGITVVAGMTTATLFGIFIIPMLFIIIE 1045


>gi|66045720|ref|YP_235561.1| acriflavin resistance protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256427|gb|AAY37523.1| Acriflavin resistance protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 1035

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 70/589 (11%), Positives = 166/589 (28%), Gaps = 44/589 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I  +G +           +   P+      +             L   
Sbjct: 9   RRPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q   +I L F   R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSLGSIAGVNTMTSNSSQGTTRIILQFDLDRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q   +   +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAITGANVRRPKGFVEDDQHNWQVQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 +   +    +  
Sbjct: 234 QLETAKD--------------------YSPLIIRYKDGATLRLKDVAKVSDAVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         LRA         +          +   
Sbjct: 274 FYNNDRAVLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRFF 532
           G      R F+IT+ +SI++S+  ++++   +    ++ ++       +        R  
Sbjct: 454 GLVESLFREFSITLSVSIIVSLIVSLTLTPMLCARWLKPREAHGENAFQRWSERVNDRMV 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              D      MR R   +   ++  + +I L       +      G  +
Sbjct: 514 AGYDRSLGWVMRHRRLTLLSLLITVVVNIALYVVVPKTFLPQQDTGQLM 562



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           +V+   S+ +   +       R  + 
Sbjct: 472 IVSLIVSLTLTPMLCARWLKPREAHG 497



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 98/262 (37%), Gaps = 9/262 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  QDPVTLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   S I +             +     ++ + +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLEREQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++ ++ I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    + L++   R +  +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHRYNK 1021


>gi|296536331|ref|ZP_06898440.1| AcrB/AcrD/AcrF family protein [Roseomonas cervicalis ATCC 49957]
 gi|296263342|gb|EFH09858.1| AcrB/AcrD/AcrF family protein [Roseomonas cervicalis ATCC 49957]
          Length = 1025

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/594 (12%), Positives = 172/594 (28%), Gaps = 30/594 (5%)

Query: 56  LVLEVDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +  +        +        +   S +        +  Q   ++TL F   R  +  
Sbjct: 45  ITVSANLPGASPETMANSVALPLEREFSTIAGIDQMSSTSGQGTTQLTLQFVLGRNIDAA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
           A  V   +     +L  +         +    + V+   N+          +        
Sbjct: 105 ALDVQAAISRAQRRLPQEMTNPPSFRKSNPADAPVVL-LNLRGGDVPLYRLNEVAAVLIS 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
             +       Q +        +  + DP R+  L  +  +        N++         
Sbjct: 164 PALSRIPGVAQVVTYGEQKYAVRVQLDPDRVAALGLSFDEAQRAIAAANSNTPVGTLNGP 223

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             + +      ++D                     +    +     G           + 
Sbjct: 224 RQQLTLRANDQLQDA--------------------EAFGQLIIGGRGNTPIRVQDVATVV 263

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +        +            +   +    ++        L+A   P     V    
Sbjct: 264 DGVENNRVAAWMNGTRGLTLAVQRQPDANTVEVVDGVKAALPALQAALPPGAEITVMLDR 323

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
             +   +    +    I  GLV++V+F+ +      L+   ++ +++  T  L+  LG  
Sbjct: 324 SVSIRDAVHDVQHHLLIAIGLVVLVIFLFLRKLWATLIPGIAVPISLAGTFGLMYALGYG 383

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           +   ++ G+ L +GL VD  I++ E       +  S F +   G      TI    ++ +
Sbjct: 384 IDNITLLGLTLAVGLVVDDAIVMLEAAVRHMEEGMSPFAAAIRGAKEIGFTIISITLSLI 443

Query: 472 IATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + +   GG   R    FA T+ L++L+S   ++++   M   +  + K  + +    
Sbjct: 444 AVFIPILLMGGVVGRVFNAFAATVSLAVLVSCVVSLTLTPLMTSRLPAHGKPNAFERVLE 503

Query: 529 SRFFLIPDCIAIQFMR--ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             F  +         +       V ++ L SI     L           +    L V   
Sbjct: 504 RGFVAVERSYGWLLDKALRFRPIVWLTFLASIGLSVWLAVSIPKGFFPVEDTGLLSVGTE 563

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            P D S     +   ++ ++  Q+   E    +        ++ Q R+   +K 
Sbjct: 564 GPQDASFDDMTVRQARVAELIRQHPSVELVNSIVGISGNSQALNQGRMFVQLKP 617



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 59/151 (39%), Gaps = 9/151 (5%)

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           ++ + +  + + +++    K +  L     + + +  T G     G   +   +  +   
Sbjct: 339 LIAIGLVVLVIFLFL---RKLWATLIPGIAVPISLAGTFGLMYALGYGIDNITLLGLTLA 395

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G  V+D +V+ +     ++     +S      +   E     +  +++     +P+ + 
Sbjct: 396 VGLVVDDAIVMLE---AAVRHMEEGMSPFAAAIRGAKEIGFTIISITLSLIAVFIPILLM 452

Query: 790 GGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
           GG V     +FA  ++  ++V+   S+ +  
Sbjct: 453 GGVVGRVFNAFAATVSLAVLVSCVVSLTLTP 483



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 65/189 (34%), Gaps = 6/189 (3%)

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            P + +           + L  +G++ +    I  ++   +       L  ++ L      
Sbjct: 832  PPTVVSGYSGTAQIFQQALAGQGMLLLAAVLIMYVVLGVLYESLVHPLTILSGLPPAALG 891

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L     F ++ ++ AV  VL LIG    + ++V D     + +    +     +  +  
Sbjct: 892  ALATLWWFNLDLSVIAVIGVLLLIGLVKKNAIMVVDVA---LAMQRKGVDPLTAVRDASI 948

Query: 767  ETLGRSVYTSM---AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + T++   A  + +         +     + +  G+ V+ + ++F+   + L  
Sbjct: 949  LRFRPIMMTTLAAAAGAVPIAAGWGAAAELRQPLGLAVVGGLAVSQALTLFVTPVLYLAF 1008

Query: 824  YDWRAKNAR 832
                 K +R
Sbjct: 1009 EGLARKFSR 1017


>gi|90415090|ref|ZP_01223047.1| putative multidrug resistance protein [Photobacterium profundum
           3TCK]
 gi|90323794|gb|EAS40409.1| putative multidrug resistance protein [Photobacterium profundum
           3TCK]
          Length = 1038

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 76/611 (12%), Positives = 181/611 (29%), Gaps = 44/611 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAIF-----KMQVREYPDMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    ++  +          S     + IT++   +         +      
Sbjct: 55  SANLIQGFITQPLEQAIAQADNIDYMTSSSVLGSSTITVTMKLNTDPNGALADILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D+++S   + +  + R    Q+       
Sbjct: 115 VRSQLPKESEDPTVTMSTGSTTAVMYIGFTSDELVSS--QITDYLERVVNPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP ++     T   +                        + N Y
Sbjct: 173 KVDLYGGLKYALRVWLDPPKMAAYNLTATDVMSVL--------------------NANNY 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +    L   TA+        +  +       +         +    +  +   
Sbjct: 213 QSATGQAVGEFVLYNGTADTQVSNTDELAKLVVSTKDGQVIRLGDIAKVSLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGEEAVVAAINAAPSANPINIAADVLTLLPELERNMPSNIKMNVMYDSTIAINESIQE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A  A +VL+V+ + +   +  L+   +I L++I    ++ + G +  L ++  +V
Sbjct: 333 VIKTIAEAALIVLVVITLFLGSFRAVLIPIITIPLSLIGVALVMQMFGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIAMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  ++ +S   A+++   M   +++  +  S   + +  F       
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSKMLKANEKPSKFESTVHSFLDRMTNR 512

Query: 539 AIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + +           V  +I+ +       F        + KG + +   A    +L  
Sbjct: 513 YEKMLGGVMTMRPVVIVFAAIVLTSLPFLFKFIPSELAPSEDKGVLMMMGTAPSNANLDY 572

Query: 594 VRSNLESLQIG 604
           + + ++ +   
Sbjct: 573 IENTMQEVNKM 583



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 88/257 (34%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     + + L  +                   E            + +     +  + 
Sbjct: 244 VVSTKDGQVIRLGDIAKVSLEKSHDIYRASANGEEAVVAAINAAPSANPINIAADVLTLL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++   +P +   N          E I++ I  +  +A+ +L+ I +    +   L  I 
Sbjct: 304 PELERNMPSNIKMNVMYDSTIAINESIQEVIKTIAEAALIVLVVITLFLGSFRAVLIPII 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +        +FG  +NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSLIGVALVMQMFGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGESPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVIAMTLTLGAVYAPIAMMGGITGSLFKEFALTLAGAVFVSGIIALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +     K ++
Sbjct: 481 SPMMCSKMLKANEKPSK 497



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 75/198 (37%), Gaps = 8/198 (4%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI--WIRFK 689
            T + + +    TE V             +  + +     + +  +    +IY+   I+F+
Sbjct: 809  TAMGDAINWFQTEAVDKLPSGYQYDFMGEARQYVTEGSALYMTFALALAIIYLVLAIQFE 868

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  + ++ L I   L   +      N+ +   ++TLIG      +++ +  ++  
Sbjct: 869  SLRDPLVILVSVPLAICGALIALSWGAASMNIYSQVGLITLIGLITKHGILICEVAKEEQ 928

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GI 805
             L+  +    D + ++    L   + T+ A    ++P +   G      F+I +    G+
Sbjct: 929  LLHQKNR--MDAVMEAAKVRLRPILMTTAAMIAGLIPLLYASGAGAAQRFSIGIVIVSGL 986

Query: 806  VVAASSSIFIAAPILLFI 823
             +    ++F+   I  ++
Sbjct: 987  AIGTIFTLFVLPVIYTYL 1004


>gi|39996711|ref|NP_952662.1| AcrB/AcrD/AcrF family protein [Geobacter sulfurreducens PCA]
 gi|39983592|gb|AAR34985.1| AcrB/AcrD/AcrF family protein [Geobacter sulfurreducens PCA]
 gi|298505722|gb|ADI84445.1| efflux pump, RND family, inner membrane protein, AcrB/AcrD/AcrF
           family [Geobacter sulfurreducens KN400]
          Length = 1032

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/687 (10%), Positives = 188/687 (27%), Gaps = 49/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +   GL+        +  ++  P+                    L   
Sbjct: 9   RRPVMTSLIMLAVMLFGLIA-----YDKLPVNDLPTVDYPTIQ---------VSATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   + +  +   S +        +     ++IT+ F   R  +  A  V   +  
Sbjct: 55  NPDTMASSVALPLEREFSTIAGVDSMTSTNGIGISRITIKFTLERDIDAAAQDVQAAISR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  D                I+    +   +    +            +I +    
Sbjct: 115 AQRQLPQDMPAPPSFQKVNPADQPILYLVLSSPTLPLSTVH--EYADTMIAQRISMVNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +  + DP  L        +++      N +        +    +    
Sbjct: 173 ASVQIYGSQKYAVRVQVDPKALAARKIGIDEVAQALERGNVNLPTGTLQGKHEALTIQTS 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +                     + K    +                 +   +      
Sbjct: 233 GQL--------------------YSAKEYEPLIVAYRNGSPVRLGEIGRVIDSVENDKVA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    +     L    R+         +          S +
Sbjct: 273 GWYKQTRAIVLAIQRQPGTNTIEVVNRIKELLPQFRSQLPGSVDLSIHFDRTEGIKESVA 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +   LV++V+F+ +      ++   ++ L+++   + + L+G ++   S+  +
Sbjct: 333 DVKFTMVLTICLVIMVIFLFLRNLPATVIPSLALPLSIVGAFSAMYLMGFSVNNISLLAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I++ E I     K +S   +   G      TI    I+ +   + + F 
Sbjct: 393 TLSVGFVVDDAIVMLENIVRHLEKGESPMEASLRGSREIGFTIVSMTISLVAVFIPVLFM 452

Query: 481 GGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G        FA+T+ L+ILIS F ++S+   +    +R    +       +      D 
Sbjct: 453 KGMLGRLLHEFAVTISLAILISGFVSLSLTPMLCSRFLRPHSGEKGHGRFYTVMERFFDG 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +   +       + +       ++ +       +     G +             +    
Sbjct: 513 MYRLYEVTLAKVLRLRRTVLAGTLAMTLLTIWLFTRIPTGLLP---------SDDIGAIF 563

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
             +     ISF+    ++  L  +  Q  +             +++       I+     
Sbjct: 564 AITEGAQGISFEEMKAKQQQLAAIVLQDPNVEGFMSSAGAAGSRVSSNSGFMFIRLKPRH 623

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYI 684
             K++ + + + +   +++   +L+++
Sbjct: 624 ERKLNADQVIQQLRPKVMAVPGILMFL 650



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 72/204 (35%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q          R+ E++ +  +++     +         I   +       V+   +
Sbjct: 285 IQRQPGTNTIEVVNRIKELLPQFRSQLPGSVDLSIHFDRTEGIKESVADVKFTMVLTICL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +++           +     L L I        L G   N  ++ A+   +G+ V+D +
Sbjct: 345 VIMVIFLFLRNLPATVIPSLALPLSIVGAFSAMYLMGFSVNNISLLALTLSVGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIG 795
           V+ + +   ++      S  +   +   E     V  +++     +P+    G    ++ 
Sbjct: 405 VMLENI---VRHLEKGESPMEASLRGSREIGFTIVSMTISLVAVFIPVLFMKGMLGRLLH 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ ++  I+++   S+ +   +
Sbjct: 462 EFAVTISLAILISGFVSLSLTPML 485



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/201 (17%), Positives = 70/201 (34%), Gaps = 8/201 (3%)

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---R 687
             T + E V               T                + V+I    ++IYI +    
Sbjct: 817  DTPLSEAVSAIEQVSRDTLPASFTTSFQGVAQAYQQSTTGLIVLIIMAIVVIYIVLGILY 876

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              +   L  ++ L       L    +FG E NL     ++ LIG    + +++ D   + 
Sbjct: 877  ESYIHPLTILSGLPSAGFGALITLMIFGKELNLYGFVGLIMLIGIVKKNAIMMIDFALE- 935

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                T      + I +         + T+MAA +  LP+A+    G     +  + +  G
Sbjct: 936  -AQRTEGKPPLEAIHQGALVRFRPIMMTTMAALMGTLPIALGIGAGAEARRTLGLAVVGG 994

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            ++V+   +++I   I  ++  
Sbjct: 995  LLVSQLLTLYITPVIYYYMDR 1015


>gi|326797855|ref|YP_004315674.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
 gi|326548619|gb|ADZ77004.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
          Length = 1053

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 140/529 (26%), Gaps = 45/529 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G++  L     Q  + RFP   P +             + L    
Sbjct: 8   RPVLATVISILLVMLGIVGML-----QLPVTRFPEIAPPS-----------VSVTL--SY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + Q     +   +        I   +       I + F      +  A  V  
Sbjct: 50  PGANAETVAQSVLLPIEEAINGVDNMTYIRSTASNTGSGSINIFFKAGTNPDQAAVNVQT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI--DQVISHAIEQSMEIIRQRIDQIG 175
            +    S++  +  +  +    ++   I+           +                ++ 
Sbjct: 110 RVSKAASQIPAEVNEAGISVMPKQNGVIMTMNIFSNHPDTVYDETFLQAYAQININRELL 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +    +P +L         +       N       FG      
Sbjct: 170 RVPGVAAISRIGARDYSMRTWLNPEKLAVYGLVPQDVIDAIKSQNFEIAPGKFGEASDEV 229

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                                               +          +      I    +
Sbjct: 230 F----------------ETVLKHRGRFSNPEDYENLVIRTNEDGSVLYLKDVARIEFGAS 273

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
            V     +             +  +          +   L+          +        
Sbjct: 274 NVGSDNKVNGFPGLTINVVQTSGSNAVEIDGQIRKVMEKLQRSFPEGIKYEITYSVRDQI 333

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S S  K T      LV +++F+ +   +  L+   +I ++++ T   L L G ++ + 
Sbjct: 334 DESISQVKHTLFEAFFLVFVIVFIFLQDFRSTLIPAIAIPVSLVGTFFFLLLFGFSINVL 393

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IG+ VD  I+V E + ++  +   S   +     S     I    +      
Sbjct: 394 TMFALVLAIGIVVDDAIVVVEAVHQKMERTGLSPRKATLSAMSEITGAILSITMVMAAVF 453

Query: 475 VVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + + F  G +    + FA T+  +ILIS   A+++  A+   ++R    
Sbjct: 454 LPVGFMEGPSGLFYKQFAYTLATAILISALNALTLSPALCALLLRNNHH 502



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 88/301 (29%), Gaps = 16/301 (5%)

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               I+    R      S       I +          +    I +       V  + +  
Sbjct: 754  MTTIRGYYGRVQAGDFSRFGRQYRIYMQADARFTNDPESFKSIFVRNKNGDMVPANTLVK 813

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              +      ++  N                   A   V E+ +K +T          +  
Sbjct: 814  LRKVFGPETVNRYNLFNAIAINATPAAGHSSGDAMKAVDEVAEKVLTANYSYEWTGMSLE 873

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFAL 713
                  + +       +I +   + +Y  +      +      + ++ + +        L
Sbjct: 874  ERQSGGQTI-------LIFTLSILFVYFLLAAQYESYILPFAILLSVPVGLVGVYTAVNL 926

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+E N+     ++ LIG    + +++ +     ++   + +S  D   +     L   +
Sbjct: 927  VGLENNIYVQVGLIMLIGLLAKNAILIVEFA---VQQRKSGLSIYDAAIEGARLRLRPIL 983

Query: 774  YTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS+A    ++P+    G         +I  A G++   +  +F+   + +    +  K 
Sbjct: 984  MTSLAFVAGLIPLMWTVGPSAQGNHSISIGAAGGMLFGVTVGVFVIPVLYMVFQHFDEKV 1043

Query: 831  A 831
             
Sbjct: 1044 K 1044



 Score = 45.8 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 82/221 (37%), Gaps = 8/221 (3%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                             +V+E +++   E +      +      +   ++         
Sbjct: 290 NVVQTSGSNAVEIDGQIRKVMEKLQRSFPEGIKYEITYSVRDQIDESISQVKHTLFEAFF 349

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           +  + + I++     +   L     + + +  T  F  LFG   N+  + A++  IG  V
Sbjct: 350 LVFVIVFIFLQ---DFRSTLIPAIAIPVSLVGTFFFLLLFGFSINVLTMFALVLAIGIVV 406

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +VV + + + M+   T +S R     +++E  G  +  +M      LP+    G   
Sbjct: 407 DDAIVVVEAVHQKME--RTGLSPRKATLSAMSEITGAILSITMVMAAVFLPVGFMEGPSG 464

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                FA  +A  I+++A +++ ++  +   +      + +
Sbjct: 465 LFYKQFAYTLATAILISALNALTLSPALCALLLRNNHHDDK 505


>gi|153004649|ref|YP_001378974.1| acriflavin resistance protein [Anaeromyxobacter sp. Fw109-5]
 gi|152028222|gb|ABS25990.1| acriflavin resistance protein [Anaeromyxobacter sp. Fw109-5]
          Length = 1044

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 64/627 (10%), Positives = 161/627 (25%), Gaps = 41/627 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ +     G+       +    +  FP+                 +  +   
Sbjct: 9   RRPVMTTLVMASFTAFGVFAYRSLPVSDLPVVDFPTIS--------------VNASVPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        S  Q    +TL F   R  ++ A  V   +  
Sbjct: 55  SPETMAASVATPLEREFSNIAGIKSMNSSSSQGSTSVTLEFDLDRDIDSAALDVQAAISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL                   +L   ++          +         +I       
Sbjct: 115 SLGKLPSTMPNPPTFRKVNPADQPILY-LSLTSPTLPLSSVNRYAQDLVAQRIATVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +  + DP  L        +++      N +    +   R    +     
Sbjct: 174 EVAIFGSQKYAVRIQLDPRALAARGIGLEEVAAAVRSSNANLPTGIIEGRDRAYTIEASG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                  + VV                +D +          +
Sbjct: 234 GLLTAAD----------------FREVVVAFRDGAPVRLADLGEVKDGVENDRVAAWFVQ 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +     E    L   +           V      +   S   
Sbjct: 278 AGKDQRSVTVAVRRQPGTNTVQIAEEVQQLLPTINQQLPAAVELKVIYDRSESIRHSVVD 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ ++++ T  L++ L  +L   S+  + 
Sbjct: 338 VQFTLLLTLALVVLVIFLFLRNLPATVIPSLALPVSLVGTFGLMAALDYSLDNLSLMALT 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E I     + +    +   G      TI    I+     + + F G
Sbjct: 398 LAVGFVVDDAIVMLENIVRHMERGEPPLEAAFRGSKEIAFTIVSMTISLAAVFLPILFMG 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP-------LSRF 531
              G     FA+T+G +IL+S F ++++   +    ++    +              +  
Sbjct: 458 GLVGRLFEEFAVTIGAAILVSGFVSLTLTPLLCARFLKPHARERHGRFYLATERAFDASL 517

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +       R      +++  +               +  G + +          
Sbjct: 518 RFYDRGLTWSLAHPRAVLAFSALVLVLMVPLWRAVPKGFLPSEDTGRLLINTEPAEGTSW 577

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFL 618
             +     ++          D   + +
Sbjct: 578 DAMVRAHRNVAEIATRHPAVDHANSTV 604



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 89/236 (37%), Gaps = 8/236 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ--TRVLEMVKKKITEIV 646
            DL  V+  +E+ ++     Q    +++  V ++ QPG +  Q    V +++     ++ 
Sbjct: 257 ADLGEVKDGVENDRVAAWFVQAGKDQRSVTVAVRRQPGTNTVQIAEEVQQLLPTINQQLP 316

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               ++        I   ++      ++  A+ +L+           +     L + +  
Sbjct: 317 AAVELKVIYDRSESIRHSVVDVQFTLLLTLALVVLVIFLFLRNLPATVIPSLALPVSLVG 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T G  A      +  ++ A+   +G+ V+D +V+ + +   ++         +   +   
Sbjct: 377 TFGLMAALDYSLDNLSLMALTLAVGFVVDDAIVMLENI---VRHMERGEPPLEAAFRGSK 433

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
           E     V  +++     LP+   GG V      FA+ +   I+V+   S+ +   +
Sbjct: 434 EIAFTIVSMTISLAAVFLPILFMGGLVGRLFEEFAVTIGAAILVSGFVSLTLTPLL 489



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 72/168 (42%), Gaps = 9/168 (5%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +GV++    ++IY+ +      +   +  +T L       L    LFG + ++ A   ++
Sbjct: 861  LGVLLVMAILVIYVVLGILYESFIHPITILTALPFAGFGALVTLLLFGTDLSIYAFVGII 920

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D   +  +      S RD I ++        + T+MAA +  LP+A
Sbjct: 921  MLVGLVKKNGIMMVDFAIEAQRA---GKSPRDAIHEASLVRFRPIMMTTMAALMGTLPIA 977

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +    G        + +  G++ +   ++++     +++   RA + R
Sbjct: 978  LGIGAGAESRQPLGLAVVGGLLFSQFLTLYVTPVFYVWMERLRAASGR 1025


>gi|300022461|ref|YP_003755072.1| acriflavin resistance protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524282|gb|ADJ22751.1| acriflavin resistance protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 1055

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/621 (10%), Positives = 165/621 (26%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L       G+L  L   +       FP+                    L    
Sbjct: 10  RPIATTLLALATILGGILGYLSLPISSLPQVDFPTVEVTTE--------------LPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     ++       +     ++ITL F   R  ++ A  V   +   
Sbjct: 56  PETMATLITASLERQFGQIQSLATMSSTSSFGLSRITLQFNLDRDIDSAAQDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  +     + +      + +++   +          S         ++        
Sbjct: 116 GSTLPKNLPYPPVYSKVNPADTPIVT-LALTSDTLSLRSLSDLADTLLAQRLSSVSGVGH 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 I   +  E D  RL     + A +S      N +                +   
Sbjct: 175 VSIEGGIKPAVRVEADIRRLASYGLSMADLSSAISAANVAGPKGSLDGDKQSFVIASNDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D                     K   D+                 +   L     G  
Sbjct: 235 ISDA--------------------KAYNDVIIAYRNEAPVRVKDVAKVSDGLENTRVGGW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T+         +           +     G    S    
Sbjct: 275 YQGKPAVIVDIQRQPGANVIDTVTRIKNELPRVERTMPAGVNLQIVSDRTGTIRASVHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV++V+ + +   +  ++A  ++ +++I T  ++   G ++   S+  + +
Sbjct: 335 QFTLVLSVGLVVMVVLLFLRSLRATIIAGVALPVSLIATFGVMYFCGFSVDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           G G  VD  I++ E +     K +    +   G      T+    ++ +   + L F   
Sbjct: 395 GTGFVVDDAIVMIENVVRHLEKGEKPMKAALDGAREIGFTVISLTLSLIAVFIPLLFMTG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLI 534
             G   R FA+T+ +++++S   ++++   M   +                       ++
Sbjct: 455 LVGRMFREFALTLTIAVVVSAVVSLTLTPMMCARLLKGDHDENGTRLGRLFGDFMDRVIL 514

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG--VLANRPVDLS 592
                ++F+           L ++     L+       +  +    +   V     +  +
Sbjct: 515 GYKHTLEFVLRHQPATLFVALLTVVLTIWLYVIMPKGFLPDQDTGAITAVVEGGPQISFN 574

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +      +        +  G
Sbjct: 575 EISRLQNDVAQIIARDPDVSG 595



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/119 (13%), Positives = 39/119 (32%), Gaps = 6/119 (5%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L + +  T G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSLRATIIAGVALPVSLIATFGVMYFCGFSVDNLSLMALTIGTGFVVDDAIVMIENV--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
           ++                 E     +  +++     +P+    G V      FA+ +  
Sbjct: 411 VRHLEKGEKPMKAALDGAREIGFTVISLTLSLIAVFIPLLFMTGLVGRMFREFALTLTI 469


>gi|134295223|ref|YP_001118958.1| acriflavin resistance protein [Burkholderia vietnamiensis G4]
 gi|134138380|gb|ABO54123.1| acriflavin resistance protein [Burkholderia vietnamiensis G4]
          Length = 1037

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 82/679 (12%), Positives = 187/679 (27%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + V++   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVIT-LAITSKTLPLTQVQDLTDTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L +       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAKYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INANDQLTSADQYNDA--------------VVAYKNGRPVMLTDVAQIVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++        L+          +          +    
Sbjct: 275 VNAEPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   S+ L++I TLA++ + G +L   S+  + +
Sbjct: 335 QFELLLAVALVVLVMYLFLANVYATLIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCATLLRHSPPHESHRFEARVHRAIDWVIA 514

Query: 540 -------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +  ++ ++  ++     +     G IQ    A + +   
Sbjct: 515 RYAVALEWVLNRQRSTLVVALLTLALTALLYVYVPKGFFPAQDTGVIQAITQAPQSISYG 574

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    ++L    +   N +   +F+         +  +  +    +   +E        
Sbjct: 575 AMAERQQALAAEILKDPNVESLTSFIGVDGTNITLNSGRMLINLKARDARSESAAQIIRD 634

Query: 653 NTEIVGPKISRELIRKGIV 671
               V       L  + + 
Sbjct: 635 LQRRVANVTGISLFMQAVQ 653



 Score = 62.4 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  L    ++ L +  TL    + G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATLIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGDSGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A  IV++A  S+ +   +   +      +
Sbjct: 468 AVTIVISAIVSLTLVPMMCATLLRHSPPH 496



 Score = 41.6 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGAGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDSLARR 1019


>gi|170750707|ref|YP_001756967.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
 gi|170657229|gb|ACB26284.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 1041

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/515 (12%), Positives = 134/515 (26%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I  +G +  L   +       +P+                         
Sbjct: 10  RPVATTLLMLAILIVGGVSYLNLPVSALPAVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     L              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQLANLNQMTSQSSAGASVITLQFSLDLPLDIAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LALTSKTLPLTQVRDLAESRLAQKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +   L         +       N +             +      
Sbjct: 175 VSISGGQRPAVRVRFNARALAAYGLNIDDLRTTITNLNVNTPKGTIDGPKQSYAINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D                     K                     ++ +       G  
Sbjct: 235 IRDP--------------------KAYDAAIIAYRNGAPVMLSEVADVVEGPENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A          +   +   T++    L   L+A                    S    
Sbjct: 275 ADATPAVILNIQRQPGANVIATVDKIKALLPQLQASLPAAVAVAPLTDRTTTIRASVEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      L+   S+ L+++  L+++ L G +L   S+  + +
Sbjct: 335 QFELGLAIALVVLVIFLFLRSLSATLIPSLSVPLSLVGALSVMDLYGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I        S   +   G      TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVVIENIARHVEAGDSPLEAALKGSREIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G     FAIT+  +I+IS   ++++V  +   +
Sbjct: 455 VVGRLFHEFAITLAATIVISAVVSLTLVPMLCARL 489



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 90/243 (37%), Gaps = 7/243 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV LS V   +E  +   +           L   +    + +A    ++ +  
Sbjct: 246 IAYRNGAPVMLSEVADVVEGPENTKLGAWADATPAVILNIQRQPGANVIATVDKIKALLP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAITT 699
           ++   +P +             R  +      + ++   +++ I++  +   A L    +
Sbjct: 306 QLQASLPAAVAVAPLTDRTTTIRASVEDVQFELGLAIALVVLVIFLFLRSLSATLIPSLS 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + L +   L    L+G   +  ++ A+    G+ V+D +VV + +    +      S  +
Sbjct: 366 VPLSLVGALSVMDLYGFSLDNLSLMALTIATGFVVDDAIVVIENI---ARHVEAGDSPLE 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              K   E     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ + 
Sbjct: 423 AALKGSREIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAATIVISAVVSLTLV 482

Query: 817 API 819
             +
Sbjct: 483 PML 485



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 84/221 (38%), Gaps = 8/221 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +     + +      A  + +E + K   EI    + +          +  +   +  V
Sbjct: 808  GQFPATTVSFNLAPGAALGQAVEAIDKVKAEIGLPPSFRVVPQGSVFAFQSALGNELFLV 867

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + + + + I + + ++ +     I + +    I   LG   LFG+  ++ AV  ++ LIG
Sbjct: 868  LAAIVTVYIVLGVLYESFIHPITILSTLPSAGIGALLGLM-LFGLSLDIIAVIGIVLLIG 926

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ D            +  R+ I ++        + T++AA  + +P+ +   
Sbjct: 927  IVKKNAIMMID--FALQAEREDGLEPREAIFQACLLRFRPILMTTLAALFAAVPLILGTG 984

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G  +     I +A G++V+   ++F    I L       +
Sbjct: 985  VGSELRQPLGICIAGGLIVSQVLTLFTTPVIYLAFDRLERR 1025


>gi|92113636|ref|YP_573564.1| acriflavin resistance protein [Chromohalobacter salexigens DSM
           3043]
 gi|91796726|gb|ABE58865.1| acriflavin resistance protein [Chromohalobacter salexigens DSM
           3043]
          Length = 1042

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/515 (12%), Positives = 139/515 (26%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G L      +       FP+                   +     
Sbjct: 10  RPVATSLVMLAILIAGALAYRLLSISSLPEVDFPTIQ--------------VTTLYPGAG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    ++    +        +     + ITL F           +V   L   
Sbjct: 56  PDVMLSHVTAPLEDELGEIAGLDAMSSTSTGGASLITLRFGLDSDLGVAEQEVQAALNQA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D  +    +      + VL+   +        E    +  +   ++       +
Sbjct: 116 DTLLPDDLPRPPSYSKVNPADTPVLT-LAVTSDSLPLTEVHDLVDTRLAQKLAQIGGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + D  RL       A +       N ++        +   S      
Sbjct: 175 VRLAGGNRPAVRIDVDARRLAAHGLDLAGVRNAVESANVNQAKGTIYGPYRAYSIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                           D+                +I         G  
Sbjct: 235 LTSAA--------------------GYRDLILKYENGAPLRLSDVASIDDGAENAQLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    I+        L A         +          +    
Sbjct: 275 ANGKGAILIDVLRQPGANVVGVIDDIERALPTLSASLPGSVDVEILSDRTTTIRAAVEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V F+ +      L+   ++ L+++ T   + L G +L   ++  + +
Sbjct: 335 QFELILAVGLVIMVTFLFLRNLPATLIPSLAVPLSLVGTFGAMYLAGFSLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  +D  I+V E I     + +S   +   G  +   TI    ++ L   + L F   
Sbjct: 395 ATGFVIDDAIVVLENITRYLERGESPLQAALKGSRQIAFTILSLTVSLLAVLIPLLFMSG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA+T+ +SI+IS F ++++   +    
Sbjct: 455 VVGVLFREFAMTLAISIVISAFVSLTLTPMLCARW 489



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 61/158 (38%), Gaps = 7/158 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +  + M+ ++++R      L     + L +  T G   L G   N   + A+    
Sbjct: 338 LILAVGLVIMVTFLFLR-NLPATLIPSLAVPLSLVGTFGAMYLAGFSLNNLTLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ ++D +VV + +    +      S      K   +     +  +++    ++P+    
Sbjct: 397 GFVIDDAIVVLENI---TRYLERGESPLQAALKGSRQIAFTILSLTVSLLAVLIPLLFMS 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           G V      FA+ +A  IV++A  S+ +   +      
Sbjct: 454 GVVGVLFREFAMTLAISIVISAFVSLTLTPMLCARWLR 491


>gi|27364502|ref|NP_760030.1| RND multidrug efflux transporter [Vibrio vulnificus CMCP6]
 gi|37678221|ref|NP_932830.1| putative multidrug resistance protein [Vibrio vulnificus YJ016]
 gi|27360621|gb|AAO09557.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Vibrio vulnificus CMCP6]
 gi|37196960|dbj|BAC92801.1| putative multidrug resistance protein [Vibrio vulnificus YJ016]
          Length = 1039

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 68/547 (12%), Positives = 162/547 (29%), Gaps = 39/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSQSVLGKSTITVNMKLNTDPNAALADILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTINGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGLKYALRVWLDPAKMGALRLTATDVMGVLNANNYQSATGQVTGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                     ++                 +    +  +   
Sbjct: 233 QVSNVQELE--------------------NLVVKSGDGEVIRLGDIAKVTLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLKLLPQLERNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VVKTIVEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  S+ +S   A+++   M   +++  +  S     +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKAHEKPSKFEEKVHHVLDGMTNR 512

Query: 539 AIQFMRA 545
             + ++A
Sbjct: 513 YEKMLKA 519



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +                   E            + +     +  +  ++   +
Sbjct: 251 EVIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLKLLPQLERNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + +  ++ +A+ +L+ I +    +   +  I T+ L + 
Sbjct: 311 PSNIKMNVMYDSTIAINESIHEVVKTIVEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +     K ++
Sbjct: 488 MLKAHEKPSK 497



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 81/785 (10%), Positives = 222/785 (28%), Gaps = 40/785 (5%)

Query: 74   SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
              EL + + K G G   + ++ +   ++   S      +      +    +        N
Sbjct: 237  VQELENLVVKSGDGE--VIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPIN 294

Query: 134  L---LVTTTEKEISIVLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISESTIQRLGSH 187
            +   ++    +    + S   ++ +    I  +    E+++  ++   I    I      
Sbjct: 295  IAADVLKLLPQLERNLPSNIKMNVMYDSTIAINESIHEVVKTIVEAAVIVLVVITLFLGS 354

Query: 188  RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
               + +P    P  L  +      M F       +    +  +  + D         D+ 
Sbjct: 355  FRAVIIPIVTIPLSLIGVAMVMQAMGFSW--NLMTLLAMVLAIGLVVDDAIVVLENVDRH 412

Query: 248  EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
               G     A      +   PV+ ++           +     G            +  V
Sbjct: 413  IKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFV 472

Query: 308  INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                  +    +                +   +   +    E+ + A +    +  G   
Sbjct: 473  SGIIALTLSPMMCSKMLKAHEKPSKFEEKVHHVLDGMTNRYEKMLKAVMDHRPVVIGFAL 532

Query: 368  IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG---IVLGI 424
            IV G + ++   I             + +    + A L  L  T+   +        +  
Sbjct: 533  IVFGTLPVLFKFIPSELAPSEDKGVVMLMGTGPSNANLDYLQNTMNDVNKILSDQPEVEF 592

Query: 425  GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
                      N+       K  S   +     S+A  T     + + +  + +  F    
Sbjct: 593  AQVFTGVPNSNQAFGLATLKPWSQREA-----SQAEITKRVGGLVSNVPGMAVTAFQMPE 647

Query: 485  VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
            + G    + +  +I+   +   +  +   I+       + +            + I+  +
Sbjct: 648  LPGAGSGLPIQFVITTPNSFESLYTIASDILTEVTSSPLFVYSDLDLKYDSATMKIKIDK 707

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI---QLGVLANRPVDLSVVRSNLESL 601
             +    G+++     ++  +   G    ID  G        V     ++   +++     
Sbjct: 708  DKAGAYGVTMQDIGITLGTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMKNYYVRA 767

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---------- 651
              G           + +   +  P  +   +  +  V    T +                
Sbjct: 768  ADGKAVPLGSLITIDVIAEPRSLPHFNQLNSATVGAVPSPGTAMGDAINWFENIASSKLP 827

Query: 652  --QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               N + +G           +     ++   + + + I+F+     +  + ++ L I   
Sbjct: 828  TGYNHDYMGEARQFVTEGSALYATFGLALAIIFLVLAIQFESIRDPIVIMVSVPLAICGA 887

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L   A      N+ +   ++TL+G      +++ +  ++       S    D + ++   
Sbjct: 888  LIALAWGLATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKRSR--IDAVMEAAKV 945

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++ 
Sbjct: 946  RLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLA 1005

Query: 825  DWRAK 829
            +    
Sbjct: 1006 EKHKP 1010


>gi|300718170|ref|YP_003742973.1| multidrug resistance protein [Erwinia billingiae Eb661]
 gi|299064006|emb|CAX61126.1| Multidrug resistance protein [Erwinia billingiae Eb661]
          Length = 1060

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 61/535 (11%), Positives = 147/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G+               +P+                   +     
Sbjct: 10  RPVATILLMVAVLLSGIFAYRFLSTSALPQVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F+     +    +V   +   
Sbjct: 56  PDVMASSVTAPLERQLGQMAGLSQMASSSSSGSSVITLKFSLDLSLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S L  D              + V++           I+    +  +   ++        
Sbjct: 116 DSLLPSDLPNPPTYKKVNPADTAVITLAASSD-TLPLIKVQDLVNTRVALKLSQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + DP  L     T   ++      N +     F  ++   +      
Sbjct: 175 VTLAGGHQPAIRVQMDPKALAAHGLTLEDVNTLIGNSNVNGSKGGFDGQYHSVTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                      ++                 I +          
Sbjct: 235 LRTAEE--------------------YGNLILTYQNGAALRLHDIATIQEAAENTYQSAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++        L+A         +          S S  
Sbjct: 275 ANNSPAIVISVQRQPGANVISVVDAIKAQLPTLQAALPDGVKVQILSDRTQTIRASISDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      L+   ++ L+++ T  ++ L   +L   S+  + +
Sbjct: 335 QFELMLSIALVVMVTFLFLRNVAATLIPSIAVPLSLVGTFGVMYLADFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  +D  I+V E I     + ++   +   G ++   TI     + +   + L F G 
Sbjct: 395 ATGFVIDDAIVVVENISRRLEQGETPMQAALKGSAQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G   R FAIT+ +SIL+SM  ++++   +  +++R+   +             
Sbjct: 455 VVGRLFREFAITLAVSILVSMVVSLTLTPMLCAYLLRHIPEERQSRFYRKGGQFF 509



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 84/229 (36%), Gaps = 12/229 (5%)

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           + ++Q+     +  + +  Q         V++ +K ++  +           +    ++ 
Sbjct: 267 ENTYQSAWANNSPAIVISVQRQPGANVISVVDAIKAQLPTLQAALPDGVKVQILSDRTQT 326

Query: 665 LIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           +          + + I+ + M+ ++++R      L     + L +  T G   L     N
Sbjct: 327 IRASISDVQFELMLSIALVVMVTFLFLR-NVAATLIPSIAVPLSLVGTFGVMYLADFSLN 385

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
             ++ A+    G+ ++D +VV + +    +      +      K   +     +  + + 
Sbjct: 386 NLSLMALTIATGFVIDDAIVVVENI---SRRLEQGETPMQAALKGSAQIGFTIISLTFSL 442

Query: 780 FISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              ++P+   G   G +   FAI +A  I+V+   S+ +   +  ++  
Sbjct: 443 IAVLIPLLFMGDVVGRLFREFAITLAVSILVSMVVSLTLTPMLCAYLLR 491



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 85/217 (39%), Gaps = 7/217 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +   D  +     + + +    +   S+I           +      +  +
Sbjct: 833  NQFPAVTVSFNLTDGYSLEDAQQAIAETQQSLAQPSSITLRYQGETAAFQSATSNTLWLI 892

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + M + + I ++ +   +  ++TL       L    L G EF+L A+  V+ LIG 
Sbjct: 893  LAALLTMYVVLGILYESFIHPVTILSTLPSAAVGALLTLLLSGTEFSLIALIGVILLIGI 952

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D            +S R+ I ++        + T+MAA +  LP+ +    
Sbjct: 953  VKKNAIMMIDFALD--AEKHQHLSPREAIHQACLLRFRPILMTTMAALLGALPLMLASGS 1010

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G  +     + +  G++ +   ++F + P++   +D 
Sbjct: 1011 GAELRQPLGLVIVGGLIFSQVLTLF-STPVIYLWFDR 1046


>gi|296116699|ref|ZP_06835309.1| acriflavin resistance protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976911|gb|EFG83679.1| acriflavin resistance protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 1058

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 66/547 (12%), Positives = 142/547 (25%), Gaps = 38/547 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I   G+L      +       +P+                        
Sbjct: 9   QRPVATTLLMLAIMLAGMLGYHFLPVSALPEVEYPTIT--------------VQTFYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +              + ITL F  +   +    +V   +  
Sbjct: 55  SPDVMATSVTAPLETQFGEMSGLDQMTSQSSGGASVITLRFGLTMTMDIAEQEVQASINQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            NS L  D     +        + VL+   I        E    I  +   +I       
Sbjct: 115 ANSLLPTDLPAPPVYAKVNPADTPVLT-LGITSKTMPLTEVEDYIDTRLAQKISQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +    +  +L         +       N +     F       +     
Sbjct: 174 LVTLSGGNRKAIRVRVNIPKLTSFGIDLDTLRTTIGNVNVNSPTGTFDGPQRATTLRIDG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E+    +                        +         ++           
Sbjct: 234 QIAGVDELLNQVIA--------------------YQNSGPVRIRDVASVVIGPENTELAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++        L+    P                S   
Sbjct: 274 WANKTPALVLNVQRQPGANVISVVDNIKYALPHLQQSLPPGITITPLTDRTTTIRASVED 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   LV+ V+F+ +      ++   S+ L+++ TLA + LLG +L   S+  + 
Sbjct: 334 VEFELGLALFLVVGVIFIFLRNVPATIIPSLSVPLSLVGTLAAMYLLGFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I            +   G      TI    ++ +   + L F G
Sbjct: 394 IATGFVVDDAIVMIENIARYIEMGDDRMTAALKGAGEIGFTIISLTVSLIAVLIPLLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+T+ ++I++S   ++++V  M   ++  K+    +              
Sbjct: 454 DVVGRLFHEFAVTLAVTIILSAVVSLTLVPMMCARLLSEKQENRKEAAWAMHVERAMVAT 513

Query: 539 AIQFMRA 545
              + RA
Sbjct: 514 IAAYGRA 520



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 89/258 (34%), Gaps = 10/258 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+A +      +R     +   + +       K   + L  Q         V++ +K  
Sbjct: 244 QVIAYQNSGPVRIRDVASVVIGPENTELAAWANKTPALVLNVQRQPGANVISVVDNIKYA 303

Query: 642 ITEIVPLSTIQNTEIVGPKISRELI---RKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
           +  +        T       +  +          + ++   ++  I+I  +     +   
Sbjct: 304 LPHLQQSLPPGITITPLTDRTTTIRASVEDVEFELGLALFLVVGVIFIFLRNVPATIIPS 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ L +  TL    L G   +  ++ A+    G+ V+D +V+ + +    +        
Sbjct: 364 LSVPLSLVGTLAAMYLLGFSLDNLSLMALTIATGFVVDDAIVMIENI---ARYIEMGDDR 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                K   E     +  +++    ++P+   G   G +   FA+ +A  I+++A  S+ 
Sbjct: 421 MTAALKGAGEIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAVTLAVTIILSAVVSLT 480

Query: 815 IAAPILLFIYDWRAKNAR 832
           +   +   +   + +N +
Sbjct: 481 LVPMMCARLLSEKQENRK 498



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 59/155 (38%), Gaps = 5/155 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++   +   +   +  ++TL       L    + G   ++  +  ++ LIG    + +++
Sbjct: 886  IVLGILYESFIHPITILSTLPSAGIGALLALLVTGSGLDIMGIIGLVLLIGIVKKNAIMM 945

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             D   +        +S    I  +        + T++AA +  +PM +    G  +    
Sbjct: 946  IDFALE--AERIEGMSPLHSIRHAALLRFRPILMTTLAAMLGAIPMVIGTGTGSELRRPL 1003

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             I +  G++V+   ++F    I LF+     +  R
Sbjct: 1004 GIAIVGGLLVSQLLTLFTTPVIYLFMDRISLRLRR 1038


>gi|113955398|ref|YP_729628.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Synechococcus sp. CC9311]
 gi|113882749|gb|ABI47707.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Synechococcus sp. CC9311]
          Length = 1045

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 80/646 (12%), Positives = 178/646 (27%), Gaps = 44/646 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--L 58
           +R     V+   ++   GL+           L+  P   P               +    
Sbjct: 9   LRRPVLTVVCSLLVLLAGLVSLF-----GLGLEDLPQLAPTQ-----------VSVTARF 52

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                D V   +    ++  + L        +  + Q++I+L F      E  A KV   
Sbjct: 53  PAASPDVVEQSVTTVLEQQLNGLSDLDSIQSTSSEGQSRISLRFKKGS-PELNAIKVQNE 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L     +  L         +++   +  Q +         + +   + +    
Sbjct: 112 VNLALRRLPQAVTRQGLSVNRSSSDLLMILGFSHPQDLYVPTFLPGWLEQSLRESLRSVS 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                       +      DP +L Q   T   +S   +  N        G         
Sbjct: 172 GVGDIRVFGSSELAYRLWMDPQKLEQANLTITDVSTALIEQNVLAAIGALGSAPAPSGQL 231

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               VE +  +                    + I     G                +   
Sbjct: 232 LSLPVEAEGRLRSQDELEN------------LVIKRLANGGLIRLSDVGRVSLGQRSYGR 279

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L            +   +      +     A L +G  P                +
Sbjct: 280 AAINLQGERSVAVGIYQRDGANALALSRSIRRNLAKLESGFPPGITMQTIVDTADTIQAN 339

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LVL+VL + +   +  +V   ++ ++++ +L ++ L G+ +    + 
Sbjct: 340 LDRTITTLRDAILLVLVVLVLFLGRWRLAMVPGIAVPISLVGSLLVIRLSGSDINSLILF 399

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G++L  G+ VD  I+V+E I +   K      + +         I  +++  +   V + 
Sbjct: 400 GLILATGIVVDDAIVVSEEIADRIEKGDPPLKAAETAMQELAGAIVATSLVLVAVFVPVL 459

Query: 479 FFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDI 525
              G   R     A+T+  +I+ S   A++        +             +    +  
Sbjct: 460 LIPGSIGRLYEPIALTITAAIVFSTLNALTFTPMASARVLTPGNGRLPGPIRRLSDRLRK 519

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
              S        +    MR  + G+ + I   +  + L  T       + +G I+     
Sbjct: 520 TMQSTEGHYSRTLRKLLMRPNWVGIVLIICLMLTGVVLRTTPTAFIPNEDQGQIRGYFTL 579

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           +    L    ++++S++              +      Q G+    
Sbjct: 580 SEGASLERSMASMDSIRAVVEQEPLIRSGNFYAGSSFGQSGEDKGS 625



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 62/147 (42%), Gaps = 6/147 (4%)

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            +   +   L  + T+ L +   L    L G+  ++     +L L+  +  + +++ +   
Sbjct: 893  LYESFLDPLVILLTVPLALLGALIGIKLRGLPLDVYGQMGLLVLVSLAAKNGILIVEFAN 952

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            + ++     +  R+ I  +  E +   V T++ +    LP+ +    G +   S    + 
Sbjct: 953  QRLRA---GLPLREAITDAAEERMRPIVLTAITSLAGFLPLLLASGTGSASRISIGTVVF 1009

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAK 829
             G++++   S+F+   + L +  WR K
Sbjct: 1010 SGLLISTLLSLFVVPAVYLSLKGWREK 1036



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 50/132 (37%), Gaps = 6/132 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +W  A+     + + +  +L    L G + N   +  ++   G  V+D +VV +   +  
Sbjct: 364 RWRLAMVPGIAVPISLVGSLLVIRLSGSDINSLILFGLILATGIVVDDAIVVSE---EIA 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                        + ++ E  G  V TS+      +P+ +  GS+       A+ +   I
Sbjct: 421 DRIEKGDPPLKAAETAMQELAGAIVATSLVLVAVFVPVLLIPGSIGRLYEPIALTITAAI 480

Query: 806 VVAASSSIFIAA 817
           V +  +++    
Sbjct: 481 VFSTLNALTFTP 492


>gi|22125283|ref|NP_668706.1| multidrug efflux system subunit MdtB [Yersinia pestis KIM 10]
 gi|45442488|ref|NP_994027.1| multidrug efflux system subunit MdtB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108808281|ref|YP_652197.1| multidrug efflux system subunit MdtB [Yersinia pestis Antiqua]
 gi|108811453|ref|YP_647220.1| multidrug efflux system subunit MdtB [Yersinia pestis Nepal516]
 gi|145599472|ref|YP_001163548.1| multidrug efflux system subunit MdtB [Yersinia pestis Pestoides F]
 gi|149365311|ref|ZP_01887346.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis CA88-4125]
 gi|162418461|ref|YP_001607466.1| multidrug efflux system subunit MdtB [Yersinia pestis Angola]
 gi|165925938|ref|ZP_02221770.1| multidrug resistance protein MdtB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937089|ref|ZP_02225654.1| multidrug resistance protein MdtB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008248|ref|ZP_02229146.1| multidrug resistance protein MdtB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212420|ref|ZP_02238455.1| multidrug resistance protein MdtB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167398402|ref|ZP_02303926.1| multidrug resistance protein MdtB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167421160|ref|ZP_02312913.1| multidrug resistance protein MdtB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424443|ref|ZP_02316196.1| multidrug resistance protein MdtB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218929911|ref|YP_002347786.1| multidrug efflux system subunit MdtB [Yersinia pestis CO92]
 gi|229838423|ref|ZP_04458582.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895411|ref|ZP_04510583.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Pestoides
           A]
 gi|229898990|ref|ZP_04514134.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229901712|ref|ZP_04516834.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Nepal516]
 gi|270489906|ref|ZP_06206980.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Yersinia pestis KIM D27]
 gi|294504585|ref|YP_003568647.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Z176003]
 gi|60390138|sp|Q8ZCW0|MDTB_YERPE RecName: Full=Multidrug resistance protein MdtB; AltName:
           Full=Multidrug transporter MdtB
 gi|21958157|gb|AAM84957.1|AE013741_4 hypothetical protein y1385 [Yersinia pestis KIM 10]
 gi|45437353|gb|AAS62904.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108775101|gb|ABG17620.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Nepal516]
 gi|108780194|gb|ABG14252.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Antiqua]
 gi|115348522|emb|CAL21460.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis CO92]
 gi|145211168|gb|ABP40575.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Pestoides
           F]
 gi|149291724|gb|EDM41798.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis CA88-4125]
 gi|162351276|gb|ABX85224.1| multidrug resistance protein MdtB [Yersinia pestis Angola]
 gi|165914952|gb|EDR33564.1| multidrug resistance protein MdtB [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922142|gb|EDR39319.1| multidrug resistance protein MdtB [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992630|gb|EDR44931.1| multidrug resistance protein MdtB [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206351|gb|EDR50831.1| multidrug resistance protein MdtB [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166960649|gb|EDR56670.1| multidrug resistance protein MdtB [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167050906|gb|EDR62314.1| multidrug resistance protein MdtB [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167056325|gb|EDR66094.1| multidrug resistance protein MdtB [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681641|gb|EEO77735.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Nepal516]
 gi|229687935|gb|EEO80007.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694789|gb|EEO84836.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701566|gb|EEO89593.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Pestoides
           A]
 gi|262362420|gb|ACY59141.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis D106004]
 gi|270338410|gb|EFA49187.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Yersinia pestis KIM D27]
 gi|294355044|gb|ADE65385.1| AcrB/AcrD/AcrF family membrane protein [Yersinia pestis Z176003]
          Length = 1052

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 60/542 (11%), Positives = 144/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMIAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +          +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPYPPIYNKVNPADPPILT-LAVTATAIPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTLSGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEEYRDLIIAYQNGAPIRLQDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           V          S +  
Sbjct: 284 ANTQSAIVLNIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTSTIRASVNDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYLFLRNAAATIIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F   
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMED 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  I ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSAEEYRDLIIAYQNGAPIRLQDVATIEQGAENNKLAAWANTQSAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   V              +  EL+    
Sbjct: 293 NIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTSTIRASVNDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 349 --LAIALVVMVIYLFLR-NAAATIIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+    
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFME 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 82/204 (40%), Gaps = 7/204 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +  V     EI   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 830  EAVAAVTLAEKEIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 889

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 890  HPITILSTLPTAGVGALLALMLTGNELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 948  DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGVGAELRQPLGVCMVGGLIVS 1007

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               ++F   P++  ++D  A+N R
Sbjct: 1008 QVLTLF-TTPVIYLLFDKLARNTR 1030


>gi|254563150|ref|YP_003070245.1| hydrophobe/amphiphile efflux-1 transporter [Methylobacterium
           extorquens DM4]
 gi|254270428|emb|CAX26428.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylobacterium extorquens DM4]
          Length = 1043

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 83/652 (12%), Positives = 195/652 (29%), Gaps = 35/652 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   G L  L     +  + +FP  +P      G         +     
Sbjct: 9   RPRLAIVIALIITIAGGLALL-----RIPVAQFPDIVPPQVSVSG---------MYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            + V   +    +     + +      +     +  + +SF      +     V   +Q 
Sbjct: 55  AEVVEASVAQPLEAQVIGVDRMIYMKSTSANDGSYSLAVSFDLGSDPDINTVSVNNRVQS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   L    +    ++ +    +      +  +   I   +D+I  +    
Sbjct: 115 ALSQLPSEVQLQGLKVQKKSSAILLFAVLYSETGAQDPLFITNYAIINVLDEISRTAGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     R+   +    D  RL  L    + +       +        G   +      Q 
Sbjct: 175 QANLFARMNYSMRIWFDTDRLTSLTLAPSDVVDAIRAQSVQAPVGRIGAPPITSEQQIQM 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ +  +S                +    +                 +           
Sbjct: 235 NVQTQGRLS-------------TPAQFGAIVLRTNSDGSVVRIRDVARVELSAQSFDSES 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +   T          L A        +V   +      + S 
Sbjct: 282 RLDGRPGVPVAIYLVPGANAVRTATAVKATLEKLSARFPAGLRYVVVHDSTTFVKDTISE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV++V+F+ +   +  ++   ++ +++I T A+L +LG +    S+  +V
Sbjct: 342 VLRTLAEAFVLVVLVVFLFLGNLRATVIPAIAVPVSLIGTFAVLYVLGYSANTVSLLAMV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     ++   S   +  +  ++  + I    +  L   V + F
Sbjct: 402 LAIGIVVDDAIVVVENVERVMEEHPELSPAEATKLAMTQITAPIIAITLVLLSVFVPIAF 461

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    R FA+T+  ++LIS   A+++  A+    +R  + +   +  +        
Sbjct: 462 IPGVSGTLFRQFAVTISAAMLISAINALTLSPALCGVFLRPTRARRGIMGRVLNGIDWVR 521

Query: 537 CIAIQFMRA--RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +R   R   + + ++          +     G   +       ++ +  D + V
Sbjct: 522 DRYAAGVRRLVRVSALSLVLVLLFAGGIFGLSRITPAGFLPEEDQGAFFVSVQLPDGASV 581

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                     +   ++  G    L  + +   D  A+     +V +      
Sbjct: 582 ARTSAVAAEVERLLKDMPGVNQVLAIVGFSLLDGAAEPNSAFLVAQLKPFAD 633



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/426 (9%), Positives = 128/426 (30%), Gaps = 21/426 (4%)

Query: 424  IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
            +  A + N        +     +S   S      RAY+         ++   +    G  
Sbjct: 613  LDGAAEPNSAFLVAQLKPFADRRSAAESAGALIGRAYAAAATIGQATVLPFNLPPIVGLS 672

Query: 484  AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
               GF   +            ++VR ++    R  ++  +     +    I   I     
Sbjct: 673  TSGGFEYVLEAREGQDPAVTDAVVRGLVAAANRDPQLARVFSTFTASNPSIFLDIDRTKA 732

Query: 544  RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
            +     +         ++  ++ +  N        + +   A+   D+  + +       
Sbjct: 733  QVLGLAMSDVFSSLQATLGGVYVNNFNLYGR-TWQVNVEGEADNRGDIRDIWNIYVRGAS 791

Query: 604  GDISFQNFDGEKNFLV-----------RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            G +        +  ++           R     G           +              
Sbjct: 792  GQMVPVRSVASERIVLGPQVLTRYNNFRAVSVNGSPAPGISSGAAMAAMEQISDRTLPEG 851

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIY---IWIRFKWYFALGAITTLILDITKTLG 709
             +        +E    G   +++    +  Y   + +   W   +  + ++++    +  
Sbjct: 852  YSYEWTGTAYQEQQASGQTWIVLGLAFLFAYLFLVALYESWTIPIPVLLSVVVGAFGSYL 911

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               L G+  +L +   ++ LI  +  + +++ +  +   +     +  R+   +   +  
Sbjct: 912  AVKLAGLSLDLYSEIGLVVLIALAAKNGILIVEFAKDQREA---GVPIREAAIRGAEQRF 968

Query: 770  GRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + TS+A  + ++P+ +  G+           +  G++ A+S  IF+   + + +   
Sbjct: 969  RAVMMTSIAFILGLVPLVIATGAAQISRRDVGTAVFGGMIAASSIGIFLVPMLYVTVQTL 1028

Query: 827  RAKNAR 832
            R + ++
Sbjct: 1029 RERVSK 1034



 Score = 38.1 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 60/149 (40%), Gaps = 11/149 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +     + + +  T     + G   N  ++ A++  IG  V+D +VV + + + + 
Sbjct: 364 LRATVIPAIAVPVSLIGTFAVLYVLGYSANTVSLLAMVLAIGIVVDDAIVVVENV-ERVM 422

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFIS---VLPMAVWGGSV---IGSFAIPMAF 803
                +S  +    ++ +     +       +     +P+A   G        FA+ ++ 
Sbjct: 423 EEHPELSPAEATKLAMTQITAPII---AITLVLLSVFVPIAFIPGVSGTLFRQFAVTISA 479

Query: 804 GIVVAASSSIFIAAPIL-LFIYDWRAKNA 831
            ++++A +++ ++  +  +F+   RA+  
Sbjct: 480 AMLISAINALTLSPALCGVFLRPTRARRG 508


>gi|332162602|ref|YP_004299179.1| multidrug efflux system subunit MdtC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666832|gb|ADZ43476.1| multidrug efflux system subunit MdtC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 1024

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/584 (12%), Positives = 165/584 (28%), Gaps = 39/584 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +             +   + + +   +    +     +    
Sbjct: 28  GFSLLPVSPLPQVDYPVIM---------VSASMPGADPETMASSIATPLERALGRIAGVN 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +      +I L F  SR     A  V   L    S L                 + 
Sbjct: 79  EMTSTSSLGSTRIILQFDLSRDINGAARDVQAALNAAQSLLPSGMPNRPTYRKMNPSDAP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++    +        +       Q   +I  +E           L  +  E +PS L   
Sbjct: 139 IMI-MTLTSDTFSQGQLYDFASTQLAQKIAQTEGVSDVSVGGSSLPAVRVELNPSALFNQ 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +       N  +                          S        AN + KT
Sbjct: 198 GVSLDAVRQAISAANVRRPQGS--------------------IDSSEQHWQVQANDEIKT 237

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                NI   +  V +  +         + S +   +   T+
Sbjct: 238 AEGYRPLIIHYNNGSPVRLQDVANIVDSVQDVRNAGMSDGKPAVLLVISREPGANIIATV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        LRA         + +        S    + +  I   LV++V+F+ +  G+
Sbjct: 298 DRIRAELPALRASIPASIELNIAQDRSPTIRASLDEVERSLVIAVALVILVVFLFLRSGR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ +++I T   + L G +L   S+  + +  G  VD  I+V E I       
Sbjct: 358 ATLIPAVAVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFT 502
                +   G      T+   +I+ +   + L    G      R FA+T+ ++I IS+  
Sbjct: 418 VKPMVAALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVI 477

Query: 503 AISIVRAMMIFI------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           ++++   M   +         ++++      L+        +       R+  V +    
Sbjct: 478 SLTLTPMMCAHLLRAQPAGEQQRIRGFGKVLLAIQQGYGRSLNWVLGHTRWVMVVLLSTI 537

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           ++     +      +     G +   + A++ +    ++  L+ 
Sbjct: 538 ALNVWLYISIPKTFFPEQDTGRMMGFIQADQSISFQAMQQKLKD 581



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 87/241 (36%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V + ++S+Q    +  +       LV  +    + +A    +     
Sbjct: 246 IHYNNGSPVRLQDVANIVDSVQDVRNAGMSDGKPAVLLVISREPGANIIATVDRIRAELP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S   N         R  + +    ++I+   +++ +++  +     L     
Sbjct: 306 ALRASIPASIELNIAQDRSPTIRASLDEVERSLVIAVALVILVVFLFLRSGRATLIPAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +    
Sbjct: 366 VPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPMV 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ + 
Sbjct: 423 AALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVISLTLT 482

Query: 817 A 817
            
Sbjct: 483 P 483



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     V++ +TE+   ST++       ++ ++ ++  +  ++ +   
Sbjct: 803  TISFNLPDGGSLSEATAAVERAMTELGVPSTVRGMFAGTAQVFQDTLKSQLWLIMAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     +S RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALDAQRNGN--LSARDAIFQASLLRFRPILMTTLAALFGALPLVLSSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + L+    R++ ++
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLYFDRLRSRFSK 1017


>gi|307129446|ref|YP_003881462.1| acriflavin resistance protein [Dickeya dadantii 3937]
 gi|306526975|gb|ADM96905.1| Acriflavin resistance protein [Dickeya dadantii 3937]
          Length = 1026

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 75/599 (12%), Positives = 188/599 (31%), Gaps = 38/599 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +     +++L+  +   G++        +  +   PS                    L  
Sbjct: 8   LSRPIAVMLLWLSVIVTGVI-----CWTKLPVAALPSFDMPTIR---------VSASLSG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    ++  S +    +   +  Q    I L F  S   +  A  V   L 
Sbjct: 54  ASPETMASSVATPLEKNLSTIPGLSMLTSTSLQGATTIVLEFDPSVNIDAAAVDVQSALY 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               KL                 + ++    ID       + +          +   +  
Sbjct: 114 QTMKKLPSQMTTPPSFRKVNPADAPIV-AIGIDSPSMTLSDLNRFTDNLISPALSTIKGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +     +    +  E DP RL     T +++       N +        +         
Sbjct: 173 AEVNVIGQKRYAVRVEIDPDRLAATDMTLSEVQTALKAANANSPIGELDGKRQMMMLQTS 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    + + + +                         +        ++   +   L  
Sbjct: 233 GDLMKAADFANVIIAT--------------------RNGQPVRLSDVASVQDSIENALSY 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + +   +   T++    L   L+A   P     +      +   +  
Sbjct: 273 SAVNGHTAIVLSINRQPGANIVATLDAINRLLPTLQAQMPPSVQVKLLNDRSLSIRQAIH 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   LV++V+ + + + +  L+   S+ ++++   AL+ LLG +L   S+ G+
Sbjct: 333 DVNITLMLTIALVVLVILLFLRHFRATLIPALSVPVSLLGAFALMYLLGMSLDNISLMGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +GL VD  I+V E I     + +S + +  +G      T+   +++ +   + +FF 
Sbjct: 393 TIAVGLVVDDAIVVLENIMRYMEEGESPWRAALLGVREVAFTVVSISLSLVAVFIPIFFM 452

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G        FA  + L+IL+S   +++++  ++  +I+++   + +      F    + 
Sbjct: 453 PGTLGLLFHEFAWVVSLAILVSAAASLTVIPLLVPMLIKHQAHPAPEPAWSQLFERGFES 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
           +   +  A  W +G   +    ++  +    L Y    KG      L     ++   + 
Sbjct: 513 LRRGYGHALDWAIGHRWVMVSTALVTVLLSVLLYWSAPKGFFPQEDLGQVTANIDTPQD 571



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 58/145 (40%), Gaps = 6/145 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L    ++ + +        L G+  +  ++  +   +G  V+D +VV + +   M+
Sbjct: 356 FRATLIPALSVPVSLLGAFALMYLLGMSLDNISLMGLTIAVGLVVDDAIVVLENI---MR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                 S        + E     V  S++     +P+    G+   +   FA  ++  I+
Sbjct: 413 YMEEGESPWRAALLGVREVAFTVVSISLSLVAVFIPIFFMPGTLGLLFHEFAWVVSLAIL 472

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
           V+A++S+ +   ++  +   +A  A
Sbjct: 473 VSAAASLTVIPLLVPMLIKHQAHPA 497



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 82/212 (38%), Gaps = 7/212 (3%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + + +      + +     + +    I   +++  +      + ++     I  ++++  
Sbjct: 803  ITVSFDLAPGKSLSDATNAIAQVQQAIQMPNSVIGSYAGQAALYQQSQTSQIWLIVMALA 862

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + + + ++ W   L  +  L       L    L  ++    A+  +L LIG    + 
Sbjct: 863  VIYVILGVLYESWIHPLTILLGLPSAAVGALLALRLLNLDLTFIAMIGILLLIGIVKKNA 922

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D         T  +S  D I ++  +     + T++ A +  LP+A     G  + 
Sbjct: 923  IMMID--FALAAQRTQGMSPHDAIVQACMQRFRPIMMTTLCAMMGALPIAFGWGAGAELR 980

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                + +  G++ +   ++FI  P+L  ++D 
Sbjct: 981  QPMGVAVVGGLLFSQLITLFI-TPVLYLLFDR 1011


>gi|212640483|ref|YP_002317003.1| cation/multidrug efflux pump [Anoxybacillus flavithermus WK1]
 gi|212561963|gb|ACJ35018.1| Cation/multidrug efflux pump [Anoxybacillus flavithermus WK1]
          Length = 1018

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 90/672 (13%), Positives = 208/672 (30%), Gaps = 41/672 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   ++  +G +  L        +   P   P           G         
Sbjct: 9   RRPVLTLVSMIIVILLGAVSLL-----NIPMKLIPDIQPPV---------GVVVATYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +   + L        + ++    I L F+ +   ++  + V   +  
Sbjct: 55  GPTEVLEKVTKPLESSLATLPGLKSMTSTSQEGSVLILLQFSWATVIDDRQNDVMQRIDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D +K   +     +  ++       +        +    +Q   ++  +E   
Sbjct: 115 --TPLPDDVQKPRFLKFDPSQFPVIQLTLTSKKGTDELQTLA----QQLKAELAKTEGVA 168

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +  ++    D ++LR    +   ++      N S  G    +   + S     
Sbjct: 169 SVNVSGTLTKRVRVLVDQNKLRTYRLSQQDIANFISANNISLPGETVVIDERQLSTRILS 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   E+                 K +V         R   E                R
Sbjct: 229 TVQSVDEL-----------------KKLVITIDPLTKKRIRLEDVAKVELVSDEQQTITR 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P +  ++       +   +      L  +L+          +          +   
Sbjct: 272 TNEQPSVLMSVLQKADANTAEVSKAFQKQLNKLLKKEQFQHVHADILFDQGEFIERTIRN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +     + VLF+ +   K  ++   +I  +VI+T  L+     TL + ++ G+ 
Sbjct: 332 IAQSLVLGGAFAMAVLFIFLRNMKSPIIIGIAIPYSVIVTFVLMYFSDFTLNIMTLGGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIG+ VD++I+V E I       +    +   G S   S I  S +T++   + + F  
Sbjct: 392 LGIGMLVDNSIVVIENISRHLAMGKEPKEAAKDGVSEVGSAIVASTLTSVAVFIPVLFIT 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+T+  S+L S+F A+++V  +    +R ++    +    S      +  
Sbjct: 452 GLIGDLFTEFALTIAFSLLASLFVALTVVPMLASRWLRPRRRYREEARLSSAPMRALERS 511

Query: 539 AIQFMRARFWGVGISILFSICSICLL-FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               +R RF  + +++      +  L            +G   + V  +    L      
Sbjct: 512 LRWSLRHRFVVLLLAVSLLGVGVVGLTKVGMQFLPNTDEGFFSIRVQTDDGYSLQATERV 571

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +++++       + +   + +   Q Q      Q+ V E+  K   +     ++      
Sbjct: 572 VQAIEHELKRVDDIETYVSLIGSTQEQSFRGTTQSNVAEIYVKMKPKDKRDRSVFVVVDE 631

Query: 658 GPKISRELIRKG 669
                +  ++K 
Sbjct: 632 LKSPVQRAVKKA 643



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 77/244 (31%), Gaps = 12/244 (4%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             + + L  V              +  +     +  LQ    ++   ++  +    K+ +
Sbjct: 247 TKKRIRLEDVAKVELVSDEQQTITRTNEQPSVLMSVLQKADANTAEVSKAFQKQLNKLLK 306

Query: 645 IVPLSTIQNT--EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                 +        G  I R +       V+  A AM +           +     +  
Sbjct: 307 KEQFQHVHADILFDQGEFIERTIRNIAQSLVLGGAFAMAVLFIFLRNMKSPIIIGIAIPY 366

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T           N+  +  +   IG  V++ +VV + +    +        ++   
Sbjct: 367 SVIVTFVLMYFSDFTLNIMTLGGLALGIGMLVDNSIVVIENI---SRHLAMGKEPKEAAK 423

Query: 763 KSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             ++E     V +++ +    +  + + G  G +   FA+     I  +  +S+F+A  +
Sbjct: 424 DGVSEVGSAIVASTLTSVAVFIPVLFITGLIGDLFTEFALT----IAFSLLASLFVALTV 479

Query: 820 LLFI 823
           +  +
Sbjct: 480 VPML 483



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 88/236 (37%), Gaps = 10/236 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++ S+ IG    Q     +   V+   +   SV    +  +V ++I ++   S       
Sbjct: 784  DIASVSIGKSRVQIQRVNEQSAVQFTVKYKSSVTLGDISALVDREIEKLDLPSETDIVFS 843

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               ++    +    +   ++   + + +  +F+ +      + T+ L +        L  
Sbjct: 844  GDRELLESSLDDLALAFALAVTFVYLVMAAQFESFKHPFIIMFTIPLMVIGIAAGLWLTH 903

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               ++  +   + L G  VN+ +V+ D               RD+I  ++   L   + T
Sbjct: 904  TPVSVMVIIGGIVLAGIVVNNAIVLVD-----YMNQLRERGERDIIVTAVKLRLRPILMT 958

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++   + +LP+A     G  +    AI +  G++ +   ++F+  PI+      R 
Sbjct: 959  ALTTILGLLPLAFGIGDGAELNQPMAITVIGGLISSTFLTLFVI-PIVYSFTLSRK 1013


>gi|163851942|ref|YP_001639985.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
 gi|218530694|ref|YP_002421510.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
 gi|163663547|gb|ABY30914.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
 gi|218522997|gb|ACK83582.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
          Length = 1045

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 62/515 (12%), Positives = 129/515 (25%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I  +G +  L   +       +P+                         
Sbjct: 10  RPVATTLSMLAILIVGAVSYLNLPVSALPAVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F      +     V   +   
Sbjct: 56  PEVMTSAVTAPLERQFGQMANLNQMSSQSSAGASVITLQFNLDIPLDIAEQSVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPTDLPAPPIYAKVNPADAPVLT-LALTSATIPLTQVRDLAETRLAQKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +   +         +       N +             +      
Sbjct: 175 VSMGGGQRPAVRVRFNSLAMAAYGLNIDDLRTTIANLNVNTPKGNIDGPTQSYAINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V D                                            +         G  
Sbjct: 235 VRDPAV--------------------YASAIIAYRNGAPVHLTDVAEVVDGAENTRLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T++    L   L+A         +          S    
Sbjct: 275 ADRTPAVILNIQRQPGANVIDTVDRIKRLLPQLQATMPASVSVAILTDRTTTIRASVHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V+F+ +      L+   S+ L++I  LA +   G +L   S+  + +
Sbjct: 335 QFELMLAIGLVVMVIFLFLRSFSATLIPSLSVPLSLIGALAAMDAWGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  S F +   G      TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVVIENIARHVEEGDSPFEAALKGSREIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FAIT+  +I+IS   ++++V  +   +
Sbjct: 455 VVGRLFREFAITLAATIVISAVVSLTLVPMLCARL 489



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 66/152 (43%), Gaps = 7/152 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + M+I++++R  +   L    ++ L +   L     +G   +  ++ A+    
Sbjct: 338 LMLAIGLVVMVIFLFLR-SFSATLIPSLSVPLSLIGALAAMDAWGFSLDNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +      S  +   K   E     +  +++    ++P+   G
Sbjct: 397 GFVVDDAIVVIENI---ARHVEEGDSPFEAALKGSREIGFTIISLTVSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              G +   FAI +A  IV++A  S+ +   +
Sbjct: 454 DVVGRLFREFAITLAATIVISAVVSLTLVPML 485



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 76/197 (38%), Gaps = 8/197 (4%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            + ++ ++    +I   ++               +   +  V  + I + I + + ++ + 
Sbjct: 830  QAVDALEAARKDINLPASFNVVPQGSVFAFESALSNELFLVCAAIITVYIVLGVLYESFI 889

Query: 693  ALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                I + +    I   LG    FG+  ++ A+  ++ LIG    + +++ D        
Sbjct: 890  HPITILSTLPSAGIGALLGLM-WFGLSLDIIAIIGIVLLIGIVKKNAIMMID--FALQAE 946

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 + RD I ++        + T++AA  + +PM V    G  +     I +A G++V
Sbjct: 947  REEGKAPRDAIYEACLLRFRPILMTTLAALFAAVPMIVGSGVGSELRQPLGIVIAGGLIV 1006

Query: 808  AASSSIFIAAPILLFIY 824
            +   ++F    I L   
Sbjct: 1007 SQVLTLFTTPVIYLAFD 1023


>gi|198283868|ref|YP_002220189.1| acriflavin resistance protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667070|ref|YP_002426506.1| transporter, AcrB/AcrD/AcrF family [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248389|gb|ACH83982.1| acriflavin resistance protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519283|gb|ACK79869.1| transporter, AcrB/AcrD/AcrF family [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 1034

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/552 (10%), Positives = 138/552 (25%), Gaps = 38/552 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +GL         Q      P+      +             L   
Sbjct: 9   RRPVATTVLAVAVALLGLFA-----YLQLPTALLPNVSFPMVM---------VTAELPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  +    +   + +          +    +ITL F  S+       +V+  +  
Sbjct: 55  SPKTMSSAVATPLERQFASIPGLNSMSAVSQNGVTQITLQFDLSKSPLGATQQVSNAVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L     +   V         V     +        +       +    +       
Sbjct: 115 AQHFLPPGMPEPPSVRQMNPSAQPVFY-IGMSAPNMPLYDLDKYAQTKVSTALSGISGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P  L     +   +                             
Sbjct: 174 DVQIYGAQTYAVRIYVNPFALSARGLSLQAVQSAL--------------------GNANV 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +       G        +    T +    +     G +                     
Sbjct: 214 NLPGGTLDGGDQAFATQVHGQLHTAEAYNHLVLAYEGGQAVPLSAVGKAVNSTQDNQQET 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          + +   +          +   L+A                    +   
Sbjct: 274 WINKTPGIVLAVTRQPGSNTVAISNKIRAMLPQLQAAMPGGVHLTNVFDLADYIRAAVHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  + + LV  V+++ +      L+   +I L+++ T  ++ LLG ++   ++  + 
Sbjct: 334 VLMTLILASILVAGVMWLFLRRPSATLIGAVAIPLSLLGTFLVMMLLGFSINTLTLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  +++ E I     + ++   +   G      T+    ++  I  + L F G
Sbjct: 394 LSVGFVVDDAVVMLENINRHIDRGETGMTAALNGSREISFTVLSMTLSLSIIFLPLIFLG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +++ + ILIS   A+S+   +    ++     +      +         
Sbjct: 454 GFVGHLFSDFGVSIAVVILISGMVALSVTPMLCSRYLKPNHAHTPTDLHDTGHLPEDGIF 513

Query: 539 AIQFMRARFWGV 550
              F  +R + +
Sbjct: 514 QRFFKGSRDFYI 525



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 92/262 (35%), Gaps = 7/262 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                HG  +  +    + L     + V LS V   + S Q               L   
Sbjct: 227 FATQVHGQLHTAEAYNHLVLAYEGGQAVPLSAVGKAVNSTQDNQQETWINKTPGIVLAVT 286

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
           +    ++VA +  +  +  ++   +P               R  + + ++ +I+++I + 
Sbjct: 287 RQPGSNTVAISNKIRAMLPQLQAAMPGGVHLTNVFDLADYIRAAVHEVLMTLILASILVA 346

Query: 682 IYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
             +W+  +   A L     + L +  T     L G   N   + A+   +G+ V+D VV+
Sbjct: 347 GVMWLFLRRPSATLIGAVAIPLSLLGTFLVMMLLGFSINTLTLLALTLSVGFVVDDAVVM 406

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSF 797
            + +    +      +          E     +  +++  I  LP+   GG V      F
Sbjct: 407 LENIN---RHIDRGETGMTAALNGSREISFTVLSMTLSLSIIFLPLIFLGGFVGHLFSDF 463

Query: 798 AIPMAFGIVVAASSSIFIAAPI 819
            + +A  I+++   ++ +   +
Sbjct: 464 GVSIAVVILISGMVALSVTPML 485



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 66/167 (39%), Gaps = 15/167 (8%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ + + + + + I ++ +   L  +T L L     L    +F     L +   ++ L+G
Sbjct: 867  LLATVLLIYVVLAILYEHFLHPLTILTALPLAAFGALLSLVIFNEPLELYSFIGIIMLLG 926

Query: 732  YSVNDKVVVYD----RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
                + +++ D    R R+         S  + I  +        + T+ AA + VLP+A
Sbjct: 927  LVKKNGIILVDFAVSRRRE-------GASAYEAIVDACTIRYRPIMMTTFAAILGVLPIA 979

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    G        I +  G++ +   +++I     LF  + +A   
Sbjct: 980  IGFGAGADSRVPLGIAVVGGLIFSQFLTLYITPAFYLFFDELQAAPK 1026


>gi|148272993|ref|YP_001222554.1| preprotein translocase subunit SecD [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147830923|emb|CAN01867.1| preprotein translocase subunit [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 602

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 122/530 (23%), Positives = 209/530 (39%), Gaps = 39/530 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF---- 65
           L  ++  IGLL         S+     S  P     L LDL GG+ ++L    D      
Sbjct: 15  LIWLLVIIGLLA---GGNAASVAFSNGSWSP----KLALDLEGGTQIILAPQLDGASSGP 67

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            +  L      +R  +   G+    +     + I +S          A  +         
Sbjct: 68  TSEQLAQAVSIIRQRVDASGVSEAEITTQGGSNIVVSLPGEPD----AATMQRLQSSAKL 123

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +L           +     +   +  +     S    ++              E T +  
Sbjct: 124 ELRPVLIGAAGTASVAATPTPTPTDGSAPADGSTPAAETPAAEATPDPSTLSDEPTAEPT 183

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
           G   +    P  Q            A         N+ +             DG    V 
Sbjct: 184 GPSDVSWVTPRLQ---------AEFAAYDCATAPENDGQAAPADRAIIACSDDGAAKYVL 234

Query: 245 DKVEISGIHLNGATANFDPKTHK-----PVVDISFDEMGARRFFEV-----TRDNIGKPL 294
             VE+ G  ++ AT+     +         V++ FD  G ++F ++     T ++     
Sbjct: 235 GPVEVDGSTISDATSGLQQSSQGVSTGTWSVNLVFDGDGTKQFGDMSTRLITLESPRNQF 294

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A VLD  V++APV    + +GK  I+GNFT E+A  LA  L+ G+LP+   +     + A
Sbjct: 295 AFVLDNEVISAPVTQGVVTNGKPSITGNFTQESAKALADQLKFGALPLSFTLQSSDVISA 354

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL-- 412
            LGS  +  G  A + GLVL+VL+ +V Y   G+V   S+ +  ++T  L++LL      
Sbjct: 355 TLGSSQLTSGLIAGLIGLVLVVLYSLVQYRALGMVTIASLVIAAVITYLLITLLSWREGY 414

Query: 413 --TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
             +L  +AG+++ IG+  DS I+  ERI++E R  + +  S++ G+ RA  TI  S+   
Sbjct: 415 RLSLAGVAGLIVAIGITADSFIVYFERIKDELRDGRGLVSSVEQGWKRALRTIIASDTVN 474

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            +A  VLF    G V+GFA+T+GL+ +I +         ++  +   +  
Sbjct: 475 FLAAAVLFILAVGNVKGFALTLGLTTIIDLIVVSLFTHPILQLLANRRFF 524



 Score = 89.4 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 103/284 (36%), Gaps = 9/284 (3%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                S L          T  +N   D  G  Q G ++ R + L   R+    +   ++ 
Sbjct: 244 ISDATSGLQQSSQGVSTGTWSVNLVFDGDGTKQFGDMSTRLITLESPRNQFAFVLDNEVI 303

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                 +           G+   ++      + K   +    T+Q+++++   +    + 
Sbjct: 304 SAPV-TQGVVTNGKPSITGNFTQESAKALADQLKFGALPLSFTLQSSDVISATLGSSQLT 362

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAV 723
            G++  +I  + +++Y  ++++    +  I +L++    T     L     G   +L  V
Sbjct: 363 SGLIAGLIGLVLVVLYSLVQYR-ALGMVTIASLVIAAVITYLLITLLSWREGYRLSLAGV 421

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A ++  IG + +  +V ++R++  ++           +++     L   + +    F++ 
Sbjct: 422 AGLIVAIGITADSFIVYFERIKDELRD---GRGLVSSVEQGWKRALRTIIASDTVNFLAA 478

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + +     +  FA+ +    ++          PIL  + + R
Sbjct: 479 AVLFILAVGNVKGFALTLGLTTIIDLIVVSLFTHPILQLLANRR 522


>gi|94312513|ref|YP_585723.1| acriflavin resistance protein [Cupriavidus metallidurans CH34]
 gi|93356365|gb|ABF10454.1| multidrug resistance efflux transporter, acriflavin resistance
           protein (MtdBC-AcrB/AcrD/AcrF family) [Cupriavidus
           metallidurans CH34]
          Length = 1069

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 72/516 (13%), Positives = 149/516 (28%), Gaps = 37/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   +   G++       P   +   PS                    L   
Sbjct: 9   RRPVMTVLLCLAVIVTGIV-----LYPTIPIAALPSFNSPVIQ---------VTATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +    +   S     + IT+ F + R  +  A  V   L  
Sbjct: 55  SPETMAASVATQLEKQFATIPGVSVISSSNTLGNSSITIEFNNDRDIDAAAVDVQAALFR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L ++              + V+    I+       E +          +       
Sbjct: 115 AQRSLPIEMTLPPSYRKVNPADAPVIL-LAINSPSMSLGELNAFGDNLISPTLATLPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +     P  L     T  +++                      +  N  
Sbjct: 174 QVQIFGQKRFSVRVRAHPDALAARGLTLDELATAL-------------------NRANAN 214

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                ++ +   L                 I   +             +   +  +  G 
Sbjct: 215 TPVGTLDGTRQTLTIQANRQMTNADAFRNIIVASQPSGAVVRLSDVAEVEDSVETIKTGS 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        L A         V      +  GS   
Sbjct: 275 WLNNERSIVLAVQRQPDANTVAVVDAIRSALPRLLAQMPGSVNVNVVNDRSMSIRGSIHD 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A+   LV++V+F+ +      L+   S+ +++I T+AL+   G +L   S+  I 
Sbjct: 335 VQFTLALTVALVVMVIFLFLRRAAATLIPTVSLPISLIGTVALMKAFGYSLDNVSLLAIT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +      +  +G      TI   +I+ +   + +FF  
Sbjct: 395 LAVGLVVDDAIVMLENIVRHIEEGVPPLKAALVGSREMGFTILSISISLVAVFIPIFFMP 454

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G        FA  + LSIL+S   +++++  +    
Sbjct: 455 GVIGLLFHEFAAVVSLSILVSALVSLTLIPMLCARF 490



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/355 (11%), Positives = 106/355 (29%), Gaps = 13/355 (3%)

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           A V+L      ++    +      LIS   A     A +    + +    +  +P +   
Sbjct: 137 APVILLAINSPSMSLGELNAFGDNLISPTLATLPGVAQVQIFGQKRFSVRVRAHPDALAA 196

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                  +     R                L                 +         + 
Sbjct: 197 RGLTLDELATALNRANANTPVGTLDGTRQTLTIQANRQMTNADAFRNIIVASQPSGAVV- 255

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    E     +             + L  Q         V++ ++  +  ++      
Sbjct: 256 RLSDVAEVEDSVETIKTGSWLNNERSIVLAVQRQPDANTVAVVDAIRSALPRLLAQMPGS 315

Query: 653 NTEIVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
               V    S  +       +  + + ++ + M+I++++R +    L    +L + +  T
Sbjct: 316 VNVNVVNDRSMSIRGSIHDVQFTLALTVALVVMVIFLFLR-RAAATLIPTVSLPISLIGT 374

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +     FG   +  ++ A+   +G  V+D +V+ + +   ++     +           E
Sbjct: 375 VALMKAFGYSLDNVSLLAITLAVGLVVDDAIVMLENI---VRHIEEGVPPLKAALVGSRE 431

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
                +  S++     +P+    G +      FA  ++  I+V+A  S+ +   +
Sbjct: 432 MGFTILSISISLVAVFIPIFFMPGVIGLLFHEFAAVVSLSILVSALVSLTLIPML 486



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/185 (17%), Positives = 65/185 (35%), Gaps = 8/185 (4%)

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDIT 705
                     G   +     +    V++ A   +IY  +      +   L  +  L     
Sbjct: 863  MPTSIFTSWGGDAAVFQSSQATQVVLLVAAIAVIYTLLGVLYESYIHPLTILAGLPSAAV 922

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L    LF +E +L A   VL LIG    + +++ D            ++    I ++ 
Sbjct: 923  GALLTLFLFNVELSLIATIGVLMLIGIVKKNAIMMID--FALAAQREQGMAPAKAIRQAC 980

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + T+ AA +  LP+A+    G  +     + +  G++ +   ++FI   I L 
Sbjct: 981  LLRFRPIMMTTFAAVMGALPLALGLGAGAELRQPLGLAVVGGLLFSQVITLFITPVIYLA 1040

Query: 823  IYDWR 827
            +  + 
Sbjct: 1041 LDRYS 1045


>gi|332876226|ref|ZP_08444001.1| RND transporter, HAE1 family [Acinetobacter baumannii 6014059]
 gi|332735498|gb|EGJ66550.1| RND transporter, HAE1 family [Acinetobacter baumannii 6014059]
          Length = 1017

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 64/617 (10%), Positives = 162/617 (26%), Gaps = 43/617 (6%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L++       +  ++ FP+      +                   + V   +   
Sbjct: 1   MMMLSLMVLGLASWKRMTVEEFPNIDFPFVV---------VTTQYAGASPEAVESDITKK 51

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            ++  + +           +  + +   F         A  V   +  V ++   +    
Sbjct: 52  LEDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAPVIAQFRDEIDTP 111

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           ++         I+      +       + S  + ++ + Q+                 Q+
Sbjct: 112 IVQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVGNVNLLGDAKRQI 169

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
             +  P +L+       ++       N          +        Q  V          
Sbjct: 170 RIKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQSKV---------- 219

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                            D+          F      +    A +                
Sbjct: 220 ----------IHPLGFGDLVIANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDI 269

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
              +  +    ++        L+A         V   +      S      T    A L 
Sbjct: 270 LKSSDANVIQVVDKTYQTLEKLKAQMPAALNYKVVADSSKGIRASIKDVVRTIIEGAVLA 329

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           ++++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + L IGL +D  I+
Sbjct: 330 VLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIV 389

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAI 490
           V E I       +    +   G       +  + +T +   + + F G   G     F +
Sbjct: 390 VRENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGV 449

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM------- 543
           T+  ++LISMF + ++   +        K K   +     +                   
Sbjct: 450 TVSTAVLISMFISFTLDPMLSAHWKDPVKKKESRLQRFFNYISNLLDGLTHIYEKLLKLA 509

Query: 544 -RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            R RF  V I  +   +                 KG I++         L   ++ L  +
Sbjct: 510 LRFRFITVIIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDSSLEYTQAKLHQV 569

Query: 602 QIGDISFQNFDGEKNFL 618
                 F +       +
Sbjct: 570 DQIIRQFPDVVSTYGVV 586



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 85/256 (33%), Gaps = 12/256 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+AN+      ++              +        V +           +V++   + +
Sbjct: 229 VIANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDILKSSDANVIQVVDKTYQTL 288

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRFKWYFALGAIT 698
            ++           V    S+ +           +  + +A+LI +     +   +    
Sbjct: 289 EKLKAQMPAALNYKVVADSSKGIRASIKDVVRTIIEGAVLAVLIVLLFLGSFRSTVITGL 348

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISF 757
           TL + +  TL F   FG   N+  + A+   IG  ++D +VV    R+N+  +T      
Sbjct: 349 TLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVV----RENIVRHTELGKDH 404

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIF 814
                    E     + T++      LP+A  GG +      F + ++  ++++   S  
Sbjct: 405 VTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTAVLISMFISFT 464

Query: 815 IAAPILLFIYDWRAKN 830
           +   +     D   K 
Sbjct: 465 LDPMLSAHWKDPVKKK 480



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 846  ALTAINLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 905

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 906  MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 962

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 963  LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 1005


>gi|330863187|emb|CBX73314.1| multidrug resistance protein mdtC [Yersinia enterocolitica W22703]
          Length = 1019

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 73/584 (12%), Positives = 165/584 (28%), Gaps = 39/584 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +             +   + + +   +    +     +    
Sbjct: 28  GFSLLPVSPLPQVDYPVIM---------VSASMPGADPETMASSIATPLERALGRIAGVN 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +      +I L F  SR     A  V   L    S L                 + 
Sbjct: 79  EMTSTSSLGSTRIILQFDLSRDINGAARDVQAALNAAQSLLPSGMPNRPTYRKMNPSDAP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++    +        +       Q   +I  +E           L  +  E +PS L   
Sbjct: 139 IMI-MTLTSDTFSQGQLYDFASTQLAQKIAQTEGVSDVSVGGSSLPAVRVELNPSALFNQ 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +       N  +                          S        AN + KT
Sbjct: 198 GVSLDAVRQAISAANVRRPQGS--------------------IDSSEQHWQVQANDEIKT 237

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                NI   +  V +  +         + S +   +   T+
Sbjct: 238 AEGYRPLIIHYNNGSPVRLQDVANIVDSVQDVRNAGMSDGKPAVLLVISREPGANIIATV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        LRA         + +        S    + +  I   LV++V+F+ +  G+
Sbjct: 298 DRIRAELPALRASIPASIELNIAQDRSPTIRASLDEVERSLVIAVALVILVVFLFLRSGR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ +++I T   + L G +L   S+  + +  G  VD  I+V E I       
Sbjct: 358 ATLIPAVAVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFT 502
                +   G      T+   +I+ +   + L    G      R FA+T+ ++I IS+  
Sbjct: 418 VKPMVAALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVI 477

Query: 503 AISIVRAMMIFI------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           ++++   M   +         ++++      L+        +       R+  V +    
Sbjct: 478 SLTLTPMMCAHLLRAQPAGEQQRIRGFGKVLLAIQQGYGRSLNWVLGHTRWVMVVLLSTI 537

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           ++     +      +     G +   + A++ +    ++  L+ 
Sbjct: 538 ALNVWLYISIPKTFFPEQDTGRMMGFIQADQSISFQAMQQKLKD 581



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 87/241 (36%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V + ++S+Q    +  +       LV  +    + +A    +     
Sbjct: 246 IHYNNGSPVRLQDVANIVDSVQDVRNAGMSDGKPAVLLVISREPGANIIATVDRIRAELP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S   N         R  + +    ++I+   +++ +++  +     L     
Sbjct: 306 ALRASIPASIELNIAQDRSPTIRASLDEVERSLVIAVALVILVVFLFLRSGRATLIPAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +    
Sbjct: 366 VPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPMV 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ + 
Sbjct: 423 AALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVISLTLT 482

Query: 817 A 817
            
Sbjct: 483 P 483



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     V++ +TE+   ST++       ++ ++ ++  +  ++ +   
Sbjct: 803  TISFNLPDGGSLSEATAAVERAMTELGVPSTVRGMFAGTAQVFQDTLKSQLWLIMAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     +S RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALDAQRNGN--LSARDAIFQASLLRFRPILMTTLAALFGALPLVLSSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + L+    R++ ++
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLYFDRLRSRFSK 1017


>gi|33591995|ref|NP_879639.1| integral membrane component of multidrug efflux system [Bordetella
           pertussis Tohama I]
 gi|33571639|emb|CAE41130.1| integral membrane component of multidrug efflux system [Bordetella
           pertussis Tohama I]
 gi|332381411|gb|AEE66258.1| integral membrane component of multidrug efflux system [Bordetella
           pertussis CS]
          Length = 1037

 Score =  151 bits (380), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 74/651 (11%), Positives = 192/651 (29%), Gaps = 41/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  +GL         +  + ++P         L  +            
Sbjct: 9   RRPVLALVVSTLILLLGL-----RATGELPVRQYP---------LTENTTITITTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+     +  + ++       S  Q ++ IT+    +        ++   +  
Sbjct: 55  SPELMQGFVTQPIAQAVATVENIDYLSSSSTQGRSLITVRMKLNADSNKALTEIMAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  +    +L  ++ +  S+     +   +   A   +  + R  + Q+   +   
Sbjct: 115 VKYRLPQEIYDPVLAKSSGEATSVAYVGFSSKTMPIPA--LTDYLQRVVLPQLSSIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    DP+R+     +  +++      N           ++  +     
Sbjct: 173 SVDLYGGQTLAMRVWLDPARMAARGISAGEIAQALRDNNVQAAPGQTKGLYVVSNIQVNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                      D+   ++            +    A      
Sbjct: 233 DLNSLTDF--------------------RDMVVRQVDGAIVRLGDVGTVELGAASYDSSA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          +     +    +E    L   ++    P     V          S   
Sbjct: 273 RMDGEKAVYFGLNATPVGNPLTIVERINALLPGIKQNLPPGVEVQVPFELARFINASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V+ V+F+ +   +  LV   +I L+++   A++  LG ++ L ++  +V
Sbjct: 333 VRNTQLEAVLIVVAVIFLCLGSLRAVLVPVVTIPLSMLGAAAIMLSLGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     + +S   +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVHRHIEEGKSPVHAALVGAREVAGPVIAMTLTLAAVYAPIGLMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI--PD 536
              G   + FA T+  ++ +S   A+++   M  F++  +  +         FF      
Sbjct: 453 GLTGSLFKEFAFTLAAAVGVSGVIALTLSPVMSSFLLNSRVSEGWMARKAEHFFQRLGDA 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +  +  R   V   I   + +   +        +       + + A +    + +  
Sbjct: 513 YGRVLDVSLRHRWVTGLIAVVVLANLPVLYGSAQRELAPAEDQAMILTAVKSPQHANIDY 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +  Q  D   Q    +    +        +      L   + +      
Sbjct: 573 VEKFGQKWDTVMQEIPEQNGRWLINGSDGVANSIGGVNLVTWQARKRSADE 623



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 81/248 (32%), Gaps = 11/248 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       + +  ++ +S    D     + G     V              +L  +K+ +
Sbjct: 253 VRLGDVGTVELGAASYDSSARMDGEKAVYFGLNATPVGNPLTIV--ERINALLPGIKQNL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
              V +               E+    +  V+I    + + +         L  + T+ L
Sbjct: 311 PPGVEVQVPFELARFINASIDEVRNTQLEAVLIVVAVIFLCLG---SLRAVLVPVVTIPL 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +          G   NL  + A++  IG  V+D +VV + +    +      S      
Sbjct: 368 SMLGAAAIMLSLGFSINLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGKSPVHAAL 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               E  G  +  ++       P+ + G   GS+   FA  +A  + V+   ++ ++  +
Sbjct: 425 VGAREVAGPVIAMTLTLAAVYAPIGLMGGLTGSLFKEFAFTLAAAVGVSGVIALTLSPVM 484

Query: 820 LLFIYDWR 827
             F+ + R
Sbjct: 485 SSFLLNSR 492



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 92/280 (32%), Gaps = 10/280 (3%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                      S  ++        +  +   Q  V +     + +      S+ +      
Sbjct: 732  YVNRFGMDGRSYDVIPQSPRGMRLTPQSLGQFYVKSASGAQVPLATLVKISMGVEPNRLT 791

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
             FD   +   +    PG ++         + ++         Q+      +    L    
Sbjct: 792  QFDQLNSATFQAIPMPGVTMGDAMQFLTEQARLLPPGFSHDWQSDARQYSQEGSAL---- 847

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +V  + + I + + +  +++     L  + ++ + I   L   AL     N+     ++T
Sbjct: 848  VVTFLFAIIVIYLVLAAQYESLRDPLIILVSVPMSICGALIPLALGMATINIYTQIGLVT 907

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG      +++ +   +        +  R  ++++    L   + T+ A  + ++P+  
Sbjct: 908  LIGLISKHGILMVEFANEMQAHA--GLDRRAAMERAARIRLRPILMTTAAMVVGLVPLLF 965

Query: 789  WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G+      S  + +  G++V    ++F+   +   +  
Sbjct: 966  ASGAGAHSRFSLGLVIVVGMLVGTLFTLFVLPTMYTLLAR 1005


>gi|148264417|ref|YP_001231123.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
 gi|146397917|gb|ABQ26550.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
          Length = 1035

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/687 (10%), Positives = 178/687 (25%), Gaps = 49/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +      ++ + I   GL     +      +   P+                  +   L 
Sbjct: 9   KRPIMTALVMASILIFGL-----SAYRLLPVSDLPNVDFPT-----------IQVTASLP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    +   S +                IT+ F  SR  +  A  V   +
Sbjct: 53  GANPDTMASAVATPLERQFSTIAGVDSMNSMNGTGTTSITIQFNLSRNIDAAAQDVQAAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
              + +L  +                ++    +          +         +I +   
Sbjct: 113 SRASRQLPQNMPAPPSFQKVNPADQPIIY-LALSSPTLPLYTVNDFADTFIAQRISMISG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q          +  + DP  L        ++S      N +        +F   +   
Sbjct: 172 VAQVQVFGSQKFAVRAQLDPKALATRQIGIDEVSKALANGNVNLPTGTIDGKFQAFTIQA 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                            +                 +   +     
Sbjct: 232 TGQL--------------------YNAAAYRPLIVAYRNGSPVRLQELGQVIDSVENDKV 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                           +   +    +++   L  + R+         +      +   S 
Sbjct: 272 ASWYKNTRAVVLAIQRQPGTNTIEVVDSIKKLLPVFRSQMPASVDLNILYDRSVSIRDSV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K T  +   LV++V+F+ +      ++   ++  ++I T A + ++  ++   S+  
Sbjct: 332 ADVKFTLILTICLVVLVIFLFLRNLSATIIPSLALPFSIIGTFAAMYVMNFSIDNISLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G  VD  I++ E I       + V  +   G      TI    ++ +   + + F
Sbjct: 392 LTLSVGFVVDDAIVMLENIVRHMEHGEGVMEAALKGSREIGFTILSMTLSLVAVFIPVLF 451

Query: 480 FGGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            GG        FA+T+ ++ILIS F ++++   +    +R  + +      +        
Sbjct: 452 MGGIMGRLLHEFAVTISMAILISGFVSLTLTPMLCSRFLRPPQKERHGRLYMFMERFFDG 511

Query: 537 CIAIQ-------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            +              R        L  +               +  G I     A + +
Sbjct: 512 MLRTYDRTLQVVLRHRRTTIAVTIALTLVTGWLFTRIPMGFLPTEDTGQIFAFTEAAQGI 571

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               ++ + + L        N D   + +        ++  +  +    + +        
Sbjct: 572 SFEDMKRHQQQLAAIVAQDPNIDAFMSSVGAGGASVANNTGRIFMRLKARDQRKLSADEI 631

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIIS 676
             +    V       +  + +  + I 
Sbjct: 632 IQELRPKVSKVPGINMFMQNLPAIRIG 658



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/204 (9%), Positives = 69/204 (33%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           + +++    +++     +         I   +       ++   +
Sbjct: 285 IQRQPGTNTIEVVDSIKKLLPVFRSQMPASVDLNILYDRSVSIRDSVADVKFTLILTICL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +L+           +     L   I  T     +     +  ++ A+   +G+ V+D +
Sbjct: 345 VVLVIFLFLRNLSATIIPSLALPFSIIGTFAAMYVMNFSIDNISLMALTLSVGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +   ++         +   K   E     +  +++     +P+   GG +   + 
Sbjct: 405 VMLENI---VRHMEHGEGVMEAALKGSREIGFTILSMTLSLVAVFIPVLFMGGIMGRLLH 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ ++  I+++   S+ +   +
Sbjct: 462 EFAVTISMAILISGFVSLTLTPML 485



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 71/182 (39%), Gaps = 7/182 (3%)

Query: 649  STIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                +T   G   + +   KG+  ++  + + + I + I ++ +   L  ++ L      
Sbjct: 835  PPTISTSFQGTAQAFQASLKGLWFLLFMAILVIYIVLGILYESFIHPLTILSGLPAAGFG 894

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L    LF  + N+ A   ++ LIG    + +++ D   +         +  D I     
Sbjct: 895  ALVTLMLFHKDLNIYAFVGIIMLIGIVKKNAIMMIDFALE--AERKEGKAPLDAIYDGAM 952

Query: 767  ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + T+MAA +  LP+A+    G        + +  G+VV+   +++I   +  ++
Sbjct: 953  IRFRPIMMTTMAALMGTLPIALGFGAGAEARRPLGLAVVGGLVVSQLLTLYITPVVYYYM 1012

Query: 824  YD 825
              
Sbjct: 1013 DK 1014


>gi|298387109|ref|ZP_06996663.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           1_1_14]
 gi|298260259|gb|EFI03129.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           1_1_14]
          Length = 1071

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 74/569 (13%), Positives = 154/569 (27%), Gaps = 48/569 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +          I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSNASNTGSGDISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTRIGVTTQKRQTSMLVVFSLYDETDTYTDAFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P  + Q       +S      N       FG    R + 
Sbjct: 171 QGVGDASVMG-QDYSMRIWLRPDVMAQYKLIPNDVSTALAEQNIEAAPGQFGE---RSNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPNGEVLRLNDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               V          
Sbjct: 274 NFTNRVNGHKAVTCIVYQMAGTNATQTITDIQKLLDEASTTLPSGLKINVSMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFVLSLIGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   + 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMSVFIP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLS 529
           + F G   G   R F +TM ++I +S   A+++  A+   +      +   K   ++   
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGLSALNALTLSPALCAVLLKPHTDHGDKKQTLVSRFH 513

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSI 558
             F       ++  + R          S+
Sbjct: 514 TSFNAAYDSILKRYKKRVLFFIQKKWLSM 542



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 74/268 (27%), Gaps = 29/268 (10%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +S   S  +      IS  N       +V          A   + E+ K+ + 
Sbjct: 792  NQGEMAPISQFISVEKVYGPDIISRFNLYTSMKVMVAPASGYTSGQALAALAEVAKENLP 851

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT- 699
                                        G+I     + +Y+ +      +   L  + + 
Sbjct: 852  AGYTYELGGMAREEAQSSGST------TGLIFILCFVFVYLLLSAQYESYILPLAVLLSI 905

Query: 700  ---LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRK 746
               L+       G  A+  I      +           A++ L+G    + +++ +    
Sbjct: 906  PFGLLGSFLFVNGMSAIGSISALKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA-- 963

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAF 803
             +      +S            L   + TS+A  + +LP+   +G       +       
Sbjct: 964  -LDRRKMGMSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIG 1022

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G+++     IFI   + +     + K  
Sbjct: 1023 GMLIGMICQIFIVPALFVIFQYLQEKVK 1050



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 78/207 (37%), Gaps = 8/207 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                      ++L+     +   + ++   N          E+++  I   I+  I + 
Sbjct: 295 TNATQTITDIQKLLDEASTTLPSGLKINVSMNANDFLFASIHEVLKTLIEAFILVFIVVY 354

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++         L     + + +  T    +L G   NL  + A++  I   V+D +VV 
Sbjct: 355 IFLQ---DLRSTLIPTIAIPVALIGTFFVLSLIGFSLNLLTLCALVLAIAIVVDDAIVVV 411

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFA 798
           + +   +    TS     +   ++NE  G  V  ++      +P++  GG+       F 
Sbjct: 412 EGVHAKLDQGYTSARLASI--DAMNELGGAIVSITLVMMSVFIPVSFMGGTAGTFYRQFG 469

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYD 825
           + MA  I ++A +++ ++  +   +  
Sbjct: 470 LTMAIAIGLSALNALTLSPALCAVLLK 496


>gi|207724813|ref|YP_002255210.1| transmembrane multidrug efflux system (partial sequence) protein
           [Ralstonia solanacearum MolK2]
 gi|206590038|emb|CAQ36999.1| probable transmembrane multidrug efflux system (partial sequence)
           protein [Ralstonia solanacearum MolK2]
          Length = 1051

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 40/374 (10%), Positives = 98/374 (26%), Gaps = 14/374 (3%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    +E  + ++             N  +T++F      +     V   +  
Sbjct: 566 PKVIAETVASPLEEQINGVENMLYMQSQANSDGNLTVTVTFKLGTDPDKAQQLVQNRVSQ 625

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L    ++  + T        ++                   +    D++       
Sbjct: 626 AMPRLPDVVQRLGVTTIKSSPDLTMVVHLLSPNDRYDMTYLRNYAVLNVKDRLARINGVG 685

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP+++ +   T  ++       N      + G          Q 
Sbjct: 686 QVQLFGSGDYSMRVWLDPNKVAERGLTANEVVRAIRDQNVQVAAGVIGGSPSVPGTDLQL 745

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I                 I    +      
Sbjct: 746 SVNAQGRLKTEQ-------------EFGDIILKSSPNGAVTTLRDVARIELAASEYGLRS 792

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L                +     +      A L+          +          S   
Sbjct: 793 LLDNKQAVAIPIFQAPGSNALQISDDVRKTMAELKEDFPEGVDYRIVYDPTQFVRSSIEA 852

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+ + +   +  ++   ++ +++I T  L+ + G ++   S+ G+V
Sbjct: 853 VTHTLLEAVALVVLVVILFLQTWRASIIPLLAVPVSIIGTFGLMLMFGFSINALSLFGLV 912

Query: 422 LGIGLAVDSNILVN 435
           L IG+ VD  I+V 
Sbjct: 913 LAIGIVVDDAIVVI 926



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV-VVYDR 743
           W  ++  +  + + I  T G   +FG   N  ++  ++  IG  V+D + V++ R
Sbjct: 875 WRASIIPLLAVPVSIIGTFGLMLMFGFSINALSLFGLVLAIGIVVDDAIVVIFSR 929


>gi|220904007|ref|YP_002479319.1| acriflavin resistance protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219868306|gb|ACL48641.1| acriflavin resistance protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 1083

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 76/594 (12%), Positives = 169/594 (28%), Gaps = 34/594 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GLL           +   P                    +     
Sbjct: 10  RPIATSLLMVALLLSGLL-----GYRYLPVAALPQIDYPTIQ---------VQTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  S   +    +V   +   
Sbjct: 56  PDVMASVVTAPLERQFGTMSGLVQMSSLSSAGASVITLQFDLSMALDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +          V++   +             +  +   +I        
Sbjct: 116 DNLLPADLPTPPVYNKVNPADPPVIT-LAVVSDAMPLTRLEDLVDTRMAQKISQLPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L     T A +       N +                    
Sbjct: 175 VTLSGGQRPAVRVQMNPRALANAGLTLADVRTAIAKANVNDAKG---------------S 219

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +     S I  N   A+ +      +       +  +   EV        LA  + G+ 
Sbjct: 220 FDGPERASTIDANDQLASAEEYARAIIGYKDGAPLRLQDVAEVVEGAENARLAAYVAGQG 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L            +   +     ++   L  +L+          V          +    
Sbjct: 280 LGFRPAIVLSVQRQPGANVIGVADSVTRLLPVLQQTMPGNVEVRVVTDRTTTIRATVHDV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV+ V+++ +   +  ++   ++ L+++ +L ++ L G +L   ++  +V+
Sbjct: 340 QLELLLAVGLVIWVIWLFLRNAQATIIPALAVPLSLVGSLGVMHLAGYSLNNLTLMALVI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K      +   G  +   TI    ++ +   + L F G 
Sbjct: 400 ATGFVVDDAIVVIENISRYLEKGMRPLQAALTGAGQIGFTIISLTVSLVAVLIPLLFMGD 459

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDCI 538
             G   R FA+T+ ++ILIS   ++++   +    +   +              L+    
Sbjct: 460 VVGRLFREFAVTLAVTILISAVISLTLTPMLCAVMLRPARSADRKGEGRFFVRLLVWYEH 519

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            + ++ A         + ++    LL+          +    +  +A  P D S
Sbjct: 520 RLDWVLAHQGLTLAVAVGTLALTVLLYIVVPKGFFPVQDTGVIQGMAEAPQDTS 573



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/206 (12%), Positives = 78/206 (37%), Gaps = 8/206 (3%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
              +  +   + + +P +             R  +    + ++++   ++  IW+  +  
Sbjct: 302 ADSVTRLLPVLQQTMPGNVEVRVVTDRTTTIRATVHDVQLELLLAVGLVIWVIWLFLRNA 361

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              +     + L +  +LG   L G   N   + A++   G+ V+D +VV + +    + 
Sbjct: 362 QATIIPALAVPLSLVGSLGVMHLAGYSLNNLTLMALVIATGFVVDDAIVVIENI---SRY 418

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVV 807
               +           +     +  +++    ++P+   G   G +   FA+ +A  I++
Sbjct: 419 LEKGMRPLQAALTGAGQIGFTIISLTVSLVAVLIPLLFMGDVVGRLFREFAVTLAVTILI 478

Query: 808 AASSSIFIAAPI-LLFIYDWRAKNAR 832
           +A  S+ +   +  + +   R+ + +
Sbjct: 479 SAVISLTLTPMLCAVMLRPARSADRK 504



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 76/221 (34%), Gaps = 8/221 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +  +  + +      +    +  V      +    +++       +         +  +
Sbjct: 803  GQFPVATIAFNVAQDSSLGAAVAAVNSTFEHLQVPDSLRIQFQGATQAFMASTNNQVWLI 862

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + + + M I + + ++ Y     I + +    +   L    L G+E  +  +  ++ LIG
Sbjct: 863  LAAIVTMYIVLGVLYESYIHPVTILSTLPSAGVGALLALM-LAGMELGVVGIIGIILLIG 921

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ D                  I ++    L   + T+MAA +  LP+ +   
Sbjct: 922  IVKKNAIMMIDFALD--AERNEGKEPLAAIRQACLLRLRPILMTTMAALLGALPLMLGWG 979

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G  +     + M  G++V+   ++F    I L+      +
Sbjct: 980  MGAELRRPLGVTMVGGLIVSQVLTLFTTPVIYLWFDRLSRR 1020



 Score = 44.3 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 42/434 (9%), Positives = 115/434 (26%), Gaps = 23/434 (5%)

Query: 84   EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
             G+   +     +++T+       ++  A  +   +    + L         V     E 
Sbjct: 601  VGVDGINQTMATSRLTIELRPLADRDARAPAIARRIMDRAASLPGMTLYLQPVQDLTIED 660

Query: 144  SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
             +  SQ  +        +      R         E  +                +     
Sbjct: 661  RVSRSQYQLTVEALDRAQLDTWARRMVEALRQQPELELVTSDYQAPGRMAWLNINRDAAG 720

Query: 204  QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            +L  + A +                      D+ G + +     + +   +    A    
Sbjct: 721  RLGISMADIDNAL-----------------YDALGQRLISTIFTQTNQYKVVLEVAPRFR 763

Query: 264  KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
            +    + +I       +     +   I +    +   R    PV   A    +    G  
Sbjct: 764  QGPGDMENIYVKGGDGKPVPLTSIATIEERPTQLSIARQGQFPVATIAFNVAQDSSLG-- 821

Query: 324  TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
                A + +               +         +++      A +  + +++  +   Y
Sbjct: 822  -AAVAAVNSTFEHLQVPDSLRIQFQGATQAFMASTNNQVWLILAAIVTMYIVLGVLYESY 880

Query: 384  GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
                 +        V   LAL+        +  I  I+L   +  ++ ++++  +  E  
Sbjct: 881  IHPVTILSTLPSAGVGALLALMLAGMELGVVGIIGIILLIGIVKKNAIMMIDFALDAERN 940

Query: 444  KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISM 500
            + +    ++          I  + + AL+  + L      G    R   +TM   +++S 
Sbjct: 941  EGKEPLAAIRQACLLRLRPILMTTMAALLGALPLMLGWGMGAELRRPLGVTMVGGLIVSQ 1000

Query: 501  FTAISIVRAMMIFI 514
               +     + ++ 
Sbjct: 1001 VLTLFTTPVIYLWF 1014


>gi|156933329|ref|YP_001437245.1| multidrug efflux system subunit MdtC [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166233227|sp|A7MHJ0|MDTC_ENTS8 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|156531583|gb|ABU76409.1| hypothetical protein ESA_01142 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1029

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 167/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSIAVTLCGVL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSTSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTFSQGELYDYASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVALNPQALFNQGVSLDTVRSAISNANVRRPQGAIEDAQRRWQLQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YEPLIVHYNNGAAVHLRDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LR          + +        S +  
Sbjct: 275 TNAKPAILLMIRKLPEANIIETVDRIRAALPELRDTIPAAIDMQIAQDRSPTIRASLAEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + + AI  GLV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQSLAISVGLVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+  E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVALENISRHLEAGVKPLQAALQGVREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
             G   R FA+T+ ++I IS+  ++++   M  ++++ K  +           L+     
Sbjct: 455 LPGRLFREFAVTLSVAIGISLVVSLTLTPMMCGWLLKAKPSEETRSRVGINRLLLALQGG 514

Query: 539 -----AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                      AR  G+ +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YARSLGWVLNHARLVGLVLLATIALNVWLYISIPKTFFPEQDTGRLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 92/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +     V+ +   + + + +T +   S+++ +     ++ +E +   ++ ++ +   
Sbjct: 803  TIAFNLPTGVSLSEASDAITRTMTSLGVPSSVRGSFAGTAQVFQETMNSQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L     F   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGMLYESYVHPLTILSTLPSAGVGALLALEAFDAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     +S RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALEAQRSGQ--LSARDAIFQACLLRFRPIMMTTLAALFGALPLMIASGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R +  R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFTR 1017


>gi|170732521|ref|YP_001764468.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3]
 gi|254245845|ref|ZP_04939166.1| Acriflavin resistance protein [Burkholderia cenocepacia PC184]
 gi|124870621|gb|EAY62337.1| Acriflavin resistance protein [Burkholderia cenocepacia PC184]
 gi|169815763|gb|ACA90346.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3]
          Length = 1039

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 81/676 (11%), Positives = 188/676 (27%), Gaps = 45/676 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAVKSKTLPLTQVQDLADTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L +       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAKYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKNGRPVMLTDVATVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +          +   +   T++        L+          +          +    
Sbjct: 275 VNSDPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVEIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V+++ +      ++   S+ L++I TLA++ + G +L   S+  + +
Sbjct: 335 QFELLLAVGLVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGESGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHSPPPESHRFEARVHRAIDWVIA 514

Query: 540 -------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +   + ++  ++     +     G IQ    A + +   
Sbjct: 515 RYAVALEWVLNRQRSTLVVALLTLGLTALLYVYVPKGFFPAQDTGVIQAITQAPQSISYG 574

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    ++L    +   N D   +F+         +  +  +    + +  E        
Sbjct: 575 AMAERQQALAAEILKDPNVDSLTSFIGVDGSNITLNSGRMLINLKARDERAETAAQIIRD 634

Query: 653 NTEIVGPKISRELIRK 668
             + V       L  +
Sbjct: 635 LQQRVSNITGISLFMQ 650



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    + G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGESGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAIVSLTLVP 483



 Score = 41.6 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDSLARR 1019


>gi|328948134|ref|YP_004365471.1| acriflavin resistance protein [Treponema succinifaciens DSM 2489]
 gi|328448458|gb|AEB14174.1| acriflavin resistance protein [Treponema succinifaciens DSM 2489]
          Length = 1062

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 71/516 (13%), Positives = 166/516 (32%), Gaps = 34/516 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEVD 61
                V+++ ++  +G+            +D +P   +P   +    D  G         
Sbjct: 10  KPVTTVLIFFIMVALGIFCIF-----DMPVDMYPDMDLPYMLVYTAYDDAG--------- 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   L    +   S L          +   + I+L F      +  A ++   +  
Sbjct: 56  -PEEVEQSLTRTMESSLSGLSGLKKMQSQSQSGASIISLEFDYGTNLDTAAIEIRDKIDI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D    + +      + I+      D         + + I+ R++Q+   +   
Sbjct: 115 VRSYLPDDADSPITLKLDPSMMPIMNIVVQGDLTPEELRTIAEDTIQPRLEQL---DGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +  +    RL     + + ++      N    G          +     
Sbjct: 172 SANVIGGREESINVDIPRDRLEAYGLSISTIAQMIGAQNVQSSGGTITSGDKNYTIKTSG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   ++    +                  S D             ++           
Sbjct: 232 KYKSIEDLKNTVITYKP-------------DSLDSSRLVTVKLRDIADVYDGYKDESTLA 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +   ++  +     +        L+A        +     V     + + 
Sbjct: 279 HLDGKPCVMLMIQKQSGKNSVTAAKNVRKAIIKLKADLPAGVELVETSNTVDIIEQTINE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +    A L + VLF+ +   K   +   SI ++V +TL L+   G T+ + S+AG++
Sbjct: 339 VVSSVVQGALLAVAVLFIFLRSLKSTFIIGLSIPISVFVTLMLMYFKGMTINMISMAGLL 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT--VVLFF 479
           LGIG+ VD++I+V E I    +++     +  +G     ++I  S +T++     ++LF 
Sbjct: 399 LGIGMLVDNSIVVLENIYAYRQRDAKPKVAAILGSQEMVTSITASTLTSVCVFLPMILFR 458

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
              G +     ++  +I+ S+  ++ +  A++  + 
Sbjct: 459 KKLGIMGQMFDSLAYTIIFSLMCSLIVAIALVPVLC 494



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 63/159 (39%), Gaps = 7/159 (4%)

Query: 673  VIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++A  + I +  +F+        I T+       +  +A+     ++  +  +L L+G
Sbjct: 880  IILAAALVFIVMASQFESLIDPFIVILTIPFSFIGVMMTYAMVNQRLSVVTIMGMLVLVG 939

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
              VN+ +V+ D       L        +   ++    L   + +++   IS+ PMA + G
Sbjct: 940  TIVNNGIVLVD---YTNLLRKRGYDLEEACVEAARNRLRPILMSTLTTVISLAPMAFFPG 996

Query: 792  S---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                 +   ++    G+   +  ++F+   I   I   R
Sbjct: 997  EGSTSMQPISLTTFGGMTFGSVMTLFLMPSIYYIINSRR 1035



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 85/248 (34%), Gaps = 6/248 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +    +  +               L+  +    +SV   + +     K+   +P 
Sbjct: 259 VKLRDIADVYDGYKDESTLAHLDGKPCVMLMIQKQSGKNSVTAAKNVRKAIIKLKADLPA 318

Query: 649 STIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                       I  + I + +  V+  + +A+ +                ++ + +  T
Sbjct: 319 GVELVETSNTVDIIEQTINEVVSSVVQGALLAVAVLFIFLRSLKSTFIIGLSIPISVFVT 378

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L      G+  N+ ++A +L  IG  V++ +VV + +             +        E
Sbjct: 379 LMLMYFKGMTINMISMAGLLLGIGMLVDNSIVVLENI---YAYRQRDAKPKVAAILGSQE 435

Query: 768 TLGRSVYTSMAAFISVLPMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +     +++ +    LPM ++     ++G     +A+ I+ +   S+ +A  ++  +  
Sbjct: 436 MVTSITASTLTSVCVFLPMILFRKKLGIMGQMFDSLAYTIIFSLMCSLIVAIALVPVLCS 495

Query: 826 WRAKNARI 833
              K  +I
Sbjct: 496 SYLKIDKI 503


>gi|254498153|ref|ZP_05110905.1| multidrug resistance protein [Legionella drancourtii LLAP12]
 gi|254352619|gb|EET11402.1| multidrug resistance protein [Legionella drancourtii LLAP12]
          Length = 1013

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/621 (12%), Positives = 189/621 (30%), Gaps = 46/621 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN-RISLGLDLRGGSHLVLEV 60
           +     +++  +I   G+     N +    + ++P        I  G             
Sbjct: 9   KRPVLAMVISLLIFLFGI-----NAIYNMQIRQYPRMDNTVITIMTG----------YPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            + D + GF+    +   +  +       S  Q  + ITL+   +   +     VT  +Q
Sbjct: 54  ADADLIAGFITSPLENAVASAEGIDYMTSSSTQGLSTITLNIKLNFDPQVAFTDVTSKVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L  + ++ +++ T++   +++    +  ++     + +    R    Q+   +  
Sbjct: 114 QTINQLPKEAQQPVVLKTSDSSTALMYISLDSTEMTPQ--QITDYATRVVQPQLQTVDGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    +P ++  L    A +S      N           ++  S   +
Sbjct: 172 AKAEILGGSTYSMRIFLNPIKMAALNVAPADVSAVLAKNNFLTAAGNTKSEYVAISITAK 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + D  + S                    ++                 I          
Sbjct: 232 TDLNDATQFS--------------------NLIVKSDKGSIVRLHDIAKIELGSQNYDSS 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        +     +    I     L   +     P     +          S  
Sbjct: 272 VTFNGKKAVFISITPTPTANPLTVISDTRKLLPSIIKEFPPSLTGTIVYDATAFIRASLD 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      +V+IV+F+ +   +  L+   +I L+++    L+ +LG ++ L ++   
Sbjct: 332 EVTHTIIEAGIIVIIVIFLFLGSLRSVLIPIVTIPLSLVGVCTLMLMLGYSINLLTLLAF 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     + +S F +  +G     + +    IT       + F 
Sbjct: 392 VLAIGLVVDDAIVVVENVHRHIEEGKSPFDAAIIGAREIATPVIAMTITLAAVYAPIGFM 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIF-----IIRYKKMKSIDINPLSRFF 532
           G   G   + FA T+  +++IS   A+++   M        I   K +  +D        
Sbjct: 452 GGLTGALFKEFAFTLASAVIISGIIALTLSPMMCSKVLSANISDGKFVHFLDTFFNKLKD 511

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +           +  +++  +       T       + +G   +  +  +   L+
Sbjct: 512 KYQRTLHSLLDTRAIMLLFAAVVILMLPYLYTHTSAETAPDEDQGFFFVMAVPPQYATLN 571

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            + +  +       SF   + 
Sbjct: 572 YIEAFTKPFDEIYKSFPETEN 592



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L  I T+ L +        + G   NL  + A +  IG  V+D +VV + +
Sbjct: 350 LFLGSLRSVLIPIVTIPLSLVGVCTLMLMLGYSINLLTLLAFVLAIGLVVDDAIVVVENV 409

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  D       E     +  ++       P+   G   G++   FA  +
Sbjct: 410 H---RHIEEGKSPFDAAIIGAREIATPVIAMTITLAAVYAPIGFMGGLTGALFKEFAFTL 466

Query: 802 AFGIVVAASSSIFIAA 817
           A  ++++   ++ ++ 
Sbjct: 467 ASAVIISGIIALTLSP 482



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 85/276 (30%), Gaps = 9/276 (3%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              +    T       +  G I +  +    V LS V + +E       +           
Sbjct: 739  YQVIPQLTRSFRMSPEQLGRIYVKSVNGTMVPLSTVVTAVEKTAPNAATHFQQLNSATIQ 798

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +            + E   + + +         +     + S  +       +II  +
Sbjct: 799  AIMMPGKTLGEGLHFLQEAANETLPKGFSYDFGGASRQFMQEGSALVFAFIFAIIIIFLV 858

Query: 679  AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
                Y   R      L  + ++ + I   L    L     N+     ++TLIG      +
Sbjct: 859  LSAQYESFRD----PLIVLISVPMSICGALIPLNLGLASINIYTQVGLITLIGLISKHGI 914

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ D    N      ++  R  ++++    L   + T+ A    VLP+ +    G     
Sbjct: 915  LIVD--FANHLQREKNLDRRAAVEEAAGIRLRPILMTTAAMVFGVLPLLIASGAGAVSRF 972

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               + +A G+++    ++F+   +  +I +      
Sbjct: 973  DIGLVIATGLLIGTCFTLFVVPTMYTYIAEDHRPKK 1008


>gi|253999659|ref|YP_003051722.1| acriflavin resistance protein [Methylovorus sp. SIP3-4]
 gi|253986338|gb|ACT51195.1| acriflavin resistance protein [Methylovorus sp. SIP3-4]
          Length = 1027

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 72/603 (11%), Positives = 180/603 (29%), Gaps = 45/603 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ ++  +GL          + +  FP                     LE  
Sbjct: 9   RNPIPAILLFGLLSIVGLFA-----FKTTKVQDFPDIELPAV---------SVTATLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +         +   Q  I++ F   +   +  + V   +  
Sbjct: 55  SPSQLENDVARKIEDSIASVDMVKHITTKILDGQVTISVQFQLEKSVSDAENDVRSAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D K  ++   T    +IV        +     + S  I  +   ++       
Sbjct: 115 VRSELPADTKDPIVSRITTSGSAIVNYSVTAKDL--DERDLSWLIDNEIAKKMLSVVGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++    DP ++  L  + + +S           G    +  +R       
Sbjct: 173 KFERGGGVDREVRISLDPDKMLALGVSASTVSSELRRMQLESSGGRTDLGGIRQQVRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V++  ++                     D+    +           ++   +A      
Sbjct: 233 TVKEARQL--------------------RDLQLPTLTGTYVTLGQVADVQDTIAERSHIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++    +     + +++      ++     A      S P         NV     +   
Sbjct: 273 LMDGKPVIGFEIT-RSKGESETGLKARVDKAVAEFNDSHPGVKITPAWENVTPVQDNFDG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+ + +   +   +A  ++ L+V+ T   +S+ G T+   ++  + 
Sbjct: 332 SMHLLYEGAVLAVLVVMLFLRDFRATFIAAVALPLSVLPTFIGMSVFGYTINTVTLLSLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +G+ VD  I+  E I       +S   +           +  +    +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIARHLNMGKSPREAAMEAADEIGMAVIATTFALIAVFLPTAFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F  T   +I  S+  A  I   M  +      +K       +  ++    +
Sbjct: 452 GIAGKFFKQFGWTAVFAIFASLAVARLITPMMAAYF-----LKPKPEKAETDGWITRRYL 506

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           A+     R  G+ +S+        L+    L  G        + ++       + ++   
Sbjct: 507 ALVAWSVRHRGITVSLALLFFVGSLMLIPLLPKGFVPPADRSMTLVNIELAPGAHLQETA 566

Query: 599 ESL 601
           ++ 
Sbjct: 567 QAA 569



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 75/250 (30%), Gaps = 6/250 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               V L  V    +++                    + +          ++    +  +
Sbjct: 249 TGTYVTLGQVADVQDTIAERSHIALMDGKPVIGFEITRSKGESETGLKARVDKAVAEFND 308

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             P   I         +         +    + +A+L+ +     +     A   L L +
Sbjct: 309 SHPGVKITPAWENVTPVQDNFDGSMHLLYEGAVLAVLVVMLFLRDFRATFIAAVALPLSV 368

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T    ++FG   N   + ++  ++G  V+D +V  + +    +      S R+   ++
Sbjct: 369 LPTFIGMSVFGYTINTVTLLSLALVVGILVDDAIVEIENI---ARHLNMGKSPREAAMEA 425

Query: 765 INETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +E     + T+ A     LP A      G     F     F I  + + +  I   +  
Sbjct: 426 ADEIGMAVIATTFALIAVFLPTAFMSGIAGKFFKQFGWTAVFAIFASLAVARLITPMMAA 485

Query: 822 FIYDWRAKNA 831
           +    + + A
Sbjct: 486 YFLKPKPEKA 495



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 76/232 (32%), Gaps = 14/232 (6%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            K                  V     +         ++        +   +L +   + + 
Sbjct: 793  KRVRNVSIEVELGQRELGAVYAEAMQLPAIKNLPPSVHIVPSSDAENMNDLFQSFGLAMA 852

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I  + +   + + F+ +   L  +  L L I        L G  F++ ++  +L L+G  
Sbjct: 853  IGVLCIYAVLVLLFRDFMQPLTILMALPLSIGGAFVLLLLTGKSFSMPSLIGLLMLMGIV 912

Query: 734  VNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-W 789
              + +++ +     R   +      S  + +  +  +     + T++A    ++P+A+  
Sbjct: 913  SKNSILLVEYAIMARGQRQDGQNPPSRLEALIDACRKRARPIIMTTLAMGAGMVPIAMGL 972

Query: 790  GGSV--IGSFAIPMAFGIVVAASSSIFIAAPIL-------LFIYDWRAKNAR 832
            G         AI +  G++ +   S+ +   +         ++     K ++
Sbjct: 973  GADPSFRSPMAIAVIGGLITSTILSLIVIPAVYTFVDDAEQWLRTRWQKRSK 1024


>gi|29348747|ref|NP_812250.1| AcrB/AcrD family multidrug resistance protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253568910|ref|ZP_04846320.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           1_1_6]
 gi|29340653|gb|AAO78444.1| AcrB/AcrD family multidrug resistance protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251840929|gb|EES69010.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           1_1_6]
          Length = 1071

 Score =  151 bits (380), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 74/569 (13%), Positives = 154/569 (27%), Gaps = 48/569 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +          I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSNASNTGSGDISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTRIGVTTQKRQTSMLVVFSLYDETDTYTDAFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P  + Q       +S      N       FG    R + 
Sbjct: 171 QGVGDASVMG-QDYSMRIWLRPDVMAQYKLIPNDVSTALAEQNIEAAPGQFGE---RSNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPNGEVLRLNDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               V          
Sbjct: 274 NFTNRVNGHKAVTCIVYQMAGTNATQTITDIQKLLDEASTTLPSGLKINVSMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFVLSLIGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   + 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMSVFIP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLS 529
           + F G   G   R F +TM ++I +S   A+++  A+   +      +   K   ++   
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGLSALNALTLSPALCAVLLKPHTDHGDKKQTLVSRFH 513

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSI 558
             F       ++  + R          S+
Sbjct: 514 TSFNAAYDSILKRYKKRVLFFIQKKWLSM 542



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 74/268 (27%), Gaps = 29/268 (10%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +S   S  +      IS  N       +V          A   + E+ K+ + 
Sbjct: 792  NQGEMAPISQFISVEKVYGPDIISRFNLYTSMKVMVAPASGYTSGQALAALAEVAKENLP 851

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT- 699
                                        G+I     + +Y+ +      +   L  + + 
Sbjct: 852  AGYTYELGGMAREEAQSSGST------TGLIFILCFVFVYLLLSAQYESYILPLAVLLSI 905

Query: 700  ---LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRK 746
               L+       G  A+  I      +           A++ L+G    + +++ +    
Sbjct: 906  PFGLLGSFLFVNGMSAIGSISALKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA-- 963

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAF 803
             +      +S            L   + TS+A  + +LP+   +G       +       
Sbjct: 964  -LDRRKMGMSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIG 1022

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G+++     IFI   + +     + K  
Sbjct: 1023 GMLIGMICQIFIVPALFVIFQYLQEKVK 1050



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 78/207 (37%), Gaps = 8/207 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                      ++L+     +   + ++   N          E+++  I   I+  I + 
Sbjct: 295 TNATQTITDIQKLLDEASTTLPSGLKINVSMNANDFLFASIHEVLKTLIEAFILVFIVVY 354

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++         L     + + +  T    +L G   NL  + A++  I   V+D +VV 
Sbjct: 355 IFLQ---DLRSTLIPTIAIPVALIGTFFVLSLIGFSLNLLTLCALVLAIAIVVDDAIVVV 411

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFA 798
           + +   +    TS     +   ++NE  G  V  ++      +P++  GG+       F 
Sbjct: 412 EGVHAKLDQGYTSARLASI--DAMNELGGAIVSITLVMMSVFIPVSFMGGTAGTFYRQFG 469

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYD 825
           + MA  I ++A +++ ++  +   +  
Sbjct: 470 LTMAIAIGLSALNALTLSPALCAVLLK 496


>gi|296126604|ref|YP_003633856.1| protein-export membrane protein SecF [Brachyspira murdochii DSM
           12563]
 gi|296018420|gb|ADG71657.1| protein-export membrane protein SecF [Brachyspira murdochii DSM
           12563]
          Length = 312

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/312 (25%), Positives = 156/312 (50%), Gaps = 11/312 (3%)

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILF----SICSICLLFTHGLNYGIDFKGG 578
           I      +         I F++       IS +         +  L T+  N GIDF GG
Sbjct: 5   IKKENDKKENNDLTKNKIPFVKFMPIAAVISAVLFIASIGLFVSKLSTNSFNMGIDFAGG 64

Query: 579 IQ--LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           ++  + +     ++++ +R+   +     ++ Q  +GE N    L    G +    R ++
Sbjct: 65  VELKVQINNPEVINIAEIRALYNNFGAETVNIQELEGEANVNAFLLRFRGSNEESDRAMQ 124

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
           ++  K         +  + I+   +S + ++   + +I+S I ++IYI IRF + +AL A
Sbjct: 125 VLYDKY--GTDKVNLIGSNIISGVVSSDNLKLAFILIIVSWIIIMIYITIRFNYRYALPA 182

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           I TLI ++    G       EF++  ++++LTLIGY++ND +VV+DR+R+N     T   
Sbjct: 183 IITLIHNVVIVFGILLFLNKEFSVLVLSSMLTLIGYTINDIIVVFDRIRENT---DTKRP 239

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           F+++++ S+N  +GR+V TS++  ++ L + +WGG ++  FA     G+++   +S FIA
Sbjct: 240 FKEIVNISLNNVVGRTVITSISTLLAALAIMIWGGFILYDFAFTFFCGVIIGTYASNFIA 299

Query: 817 APILLFIYDWRA 828
           + +L+     + 
Sbjct: 300 SGLLILFMKTKK 311


>gi|212690733|ref|ZP_03298861.1| hypothetical protein BACDOR_00220 [Bacteroides dorei DSM 17855]
 gi|237709770|ref|ZP_04540251.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           9_1_42FAA]
 gi|237725079|ref|ZP_04555560.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp. D4]
 gi|265754401|ref|ZP_06089590.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           3_1_33FAA]
 gi|212666707|gb|EEB27279.1| hypothetical protein BACDOR_00220 [Bacteroides dorei DSM 17855]
 gi|229436345|gb|EEO46422.1| AcrB/AcrD family multidrug resistance protein [Bacteroides dorei
           5_1_36/D4]
 gi|229456406|gb|EEO62127.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           9_1_42FAA]
 gi|263235110|gb|EEZ20665.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           3_1_33FAA]
          Length = 1072

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 77/622 (12%), Positives = 164/622 (26%), Gaps = 56/622 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    + ++P   P                      
Sbjct: 9   RPVLSTVISVLIVILGII-----GLATLPVTQYPDIAPPTVQ---------VRATYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
              V   L      L   +        I   +       I + F      +  A  V   
Sbjct: 55  STAV---LNSVIAPLEDQINGVENMMYIQSSASNNGAADINVYFNQGTDPDMAAVNVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +      L  +  K  + T   +   +++     +    +            I +I   +
Sbjct: 112 VSMAQGLLPAEVTKVGVTTQKRQNSMLMVFSLYDETDSYNIEFIENYANINLIPEIKRVK 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +     P  + Q       +S      N       FG    R    
Sbjct: 172 GVGDANVLG-QDYSMRIWLKPDVMAQYKLVPTDVSAALAEQNIEAAPGQFGE---RGDQT 227

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            QY +  K  +              +T++    +                +I        
Sbjct: 228 FQYTIRYKGRL-------------QQTNEFEDIVIKALPDGNVLRLGDVADIELGRLAYT 274

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +        I    A  +   TI     + A  +          + +        S
Sbjct: 275 FNNTVNGHKAVSCIVYQMAGTNATETISNLEEVLAKAQESLPTGLNINIAQNANDFLFAS 334

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV IV+++ +   +  L+   +I + ++ T  +L L+G ++ L +++
Sbjct: 335 IHEVIKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALVATFFVLKLIGFSVNLLTLS 394

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   + +
Sbjct: 395 AMVLAIAIVVDDAIVVVEGVHAKLDQGYKSSREASIDAMSELGGAIVSITLVMMSVFIPV 454

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------------KKM 520
            F G   G   R F ITM ++I  S   A+++  A+    ++               +  
Sbjct: 455 SFMGGTAGTFYRQFGITMAIAIGFSALNALTLSPALCAIFLKPHDEGHGTKKMTRVERFH 514

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
            + +    S        +     +       ++    +    +  T       +  G I 
Sbjct: 515 TAFNAAYDSILKKYKKHVVFFIHKKWLSFGLVTASIILLVFFMKVTPTGMVPNEDTGTIM 574

Query: 581 LGVLANRPVDLSVVRSNLESLQ 602
             V              L  + 
Sbjct: 575 GAVTLPPGTSQERAMEILNRVD 596



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 60/452 (13%), Positives = 121/452 (26%), Gaps = 39/452 (8%)

Query: 413  TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            T+ S  G + G G +  S I+  +   E +    S    +   F RA   I D+    ++
Sbjct: 609  TVISGFGFIGGQGPSYGSIIIKLKDWEERSMMQNSDI-VVGTLFMRAQKIIKDAQ---VL 664

Query: 473  ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
                    G  A     + M       +     +V   M  +    ++ S        F 
Sbjct: 665  FFAPPMIPGYSASSDIELNMQDKTGGDLNHFYDVVLDYMDALKARPEINSAQTTFNPNFP 724

Query: 533  LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                 I     +         +         L+    N        + +        +L 
Sbjct: 725  QYMLDIDAAACKKAGISPSDILTTMQGYFGGLYASNFNR-FGKMYRVMIQAEPEATKNLE 783

Query: 593  VVRSNLESLQIGDISFQNFDGEK-----------NFLVRLQYQPGDSVAQTRVLEMVKKK 641
             + S              F   K           N    ++     +   T    +    
Sbjct: 784  SLNSIKIRNGNEMAPISQFVSVKKVYGPDVISRFNLYTSIKVMVAPASGYTSGQALQAIA 843

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAIT 698
                  L T    E+ G             G+I     + +Y+ +      +   L  + 
Sbjct: 844  EVAKENLPTGYGYELGGMAREEASTSGSSTGIIFILCFVFVYLLLSAQYESYILPLSVLL 903

Query: 699  T----LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRM 744
            +    L+       GF AL  I      +           A++ L+G    + +++ +  
Sbjct: 904  SVPFGLLGSFLFVNGFAALGNIPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFA 963

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPM 801
               +      +S            L   + TS+A  + ++P+ +  G             
Sbjct: 964  ---LDRRKQGMSISWAAVLGAAARLRPILMTSLAMIVGLIPLMLAMGVGAHGNRTLGASA 1020

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              G+++     IFI   + +     + K   I
Sbjct: 1021 IGGMLIGMIFQIFIVPVLFVVFQWLQEKFKPI 1052



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 79/211 (37%), Gaps = 6/211 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      LE V  K  E +P     N            I + I  +I + I
Sbjct: 288 IVYQMAGTNATETISNLEEVLAKAQESLPTGLNINIAQNANDFLFASIHEVIKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYIFLQDMRSTLIPAIAIPVALVATFFVLKLIGFSVNLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R+    +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SSREASIDAMSELGGAIVSITLVMMSVFIPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F I MA  I  +A +++ ++  +      
Sbjct: 466 RQFGITMAIAIGFSALNALTLSPALCAIFLK 496


>gi|75907712|ref|YP_322008.1| preprotein translocase subunit SecD [Anabaena variabilis ATCC
           29413]
 gi|75701437|gb|ABA21113.1| SecD export membrane protein [Anabaena variabilis ATCC 29413]
          Length = 474

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 129/485 (26%), Positives = 200/485 (41%), Gaps = 62/485 (12%)

Query: 43  RISLGLDLRGGSHLVL----EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97
            I LGLDLRGGS + +      +        L      +   +   G+    ++ +  +K
Sbjct: 26  PIPLGLDLRGGSQITILVKPTAEIKQITERELNGVKSVVEGRINGLGVSEPVIQTVGADK 85

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I +        E     +    Q    K     +  LL     +                
Sbjct: 86  ILVQLPGVNDPEQAERVLGGTAQLEFRKQKPGTETQLLAFQASRLELQAKQAELKKSNDK 145

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            A+ +++E +++    I     +       + L                           
Sbjct: 146 AAVNKNLEDLQKNNQAIAELFESTNPPLDGKHL------------------------QDA 181

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
               ++    + V    D  G +   E    ++G   +      +     P V I F   
Sbjct: 182 YGEPTQGSSNWNVAIRFDQKGGELFAELTKNLAGTGRSIGIFLDNELISAPNVGIEFAST 241

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
           G                                 I  G A I+G FT + A  L   LR 
Sbjct: 242 G---------------------------------ITGGSAVITGRFTAQQANDLGVQLRG 268

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           G+LP+ + I E R VGA LG DSI     A + GL L+++FM+V Y   GL+AD ++ + 
Sbjct: 269 GALPVPVEIAEIRTVGATLGQDSIKSSIYAGLGGLALVLIFMVVYYRLPGLIADIALVIY 328

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
            ILT A  +LLG TLTLP IAG +L IG+AVD+N+L+ ER REE +  +S++ S++ GF 
Sbjct: 329 AILTWASFALLGITLTLPGIAGFILSIGMAVDANVLIFERTREELQAGKSLYRSVESGFY 388

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           RA+S+I D N+T +IA   LF+ G G V+GFA+T+ L + +SMF+AI+  R  M   I  
Sbjct: 389 RAFSSILDGNLTTVIACAALFWLGAGLVKGFALTLALGVAVSMFSAITCSRTFMFLAISI 448

Query: 518 KKMKS 522
             ++ 
Sbjct: 449 PSLRK 453



 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 72/165 (43%), Gaps = 4/165 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ I+  I   +     +LI++ + ++    L A   L++    T   FAL GI 
Sbjct: 284 GATLGQDSIKSSIYAGLGGLALVLIFMVVYYRLP-GLIADIALVIYAILTWASFALLGIT 342

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      S    ++          +  ++
Sbjct: 343 LTLPGIAGFILSIGMAVDANVLIFERTREELQA---GKSLYRSVESGFYRAFSSILDGNL 399

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +   G  ++  FA+ +A G+ V+  S+I  +   +  
Sbjct: 400 TTVIACAALFWLGAGLVKGFALTLALGVAVSMFSAITCSRTFMFL 444


>gi|254473463|ref|ZP_05086860.1| acriflavin resistance protein [Pseudovibrio sp. JE062]
 gi|211957579|gb|EEA92782.1| acriflavin resistance protein [Pseudovibrio sp. JE062]
          Length = 1052

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 76/664 (11%), Positives = 172/664 (25%), Gaps = 50/664 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + L  +I   G+   L   + +      P                         
Sbjct: 22  RRPVLAITLNLLIIVAGIAALLGVEVREMPNVDRPVVT--------------VTTTYSGA 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +  +  +    ++  +          S +  +++IT+ F D       A+ +   + G
Sbjct: 68  PPEVTDAEITSVLEKAIARTAGIESVSSSSKYGRSRITVEFNDGVDVSEAANDIRDAVSG 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D    ++V        ++      D++     E S  +  + ID+I       
Sbjct: 128 AGRNLPEDADTPVVVKADADADPVMRLVVTSDEMRIE--ELSKFVDDEIIDRITSVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           D   +     T   +            G                
Sbjct: 186 SVDVYGSQTPVFKVAIDVQAMSSRGLTPDNLRSVLQELALDTSGGSLETGDQELFVRANS 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   +I  + LN  T                               +         G 
Sbjct: 246 DVKTAEQIGMVKLNDTT------------------------RIRDIAFVSYGPERASSGA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +            A ++          +   +     G+   
Sbjct: 282 FYNGKRAVGMGIIRSANSNTIDISNDVRAEVARMQEQLPKDVEVNISSDDATFIGGAIKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +   +V+ V+ + +   +  L+   ++ + +I  L  + L G +  + ++  ++
Sbjct: 342 VVFSLFLSTSIVVGVMLLFLGSIRVTLIPAVTVPVALIGALVGIWLAGFSANVLTLLALL 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+V E I +   K Q    +  +G    +  +  +  T     + + F  
Sbjct: 402 LATGMVVDDAIVVLENISKRVHKGQGPRAAAILGTREVFFAVITTTATLAAVFIPISFLP 461

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F   + +S+++S F A+++   M   ++R K  +       +   +     
Sbjct: 462 GSVGKLFSEFGFVLAISVMLSSFVALTLAPMMASRLLRTKNYEDTHKPSAAWRAISSVGT 521

Query: 539 AIQF-------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           AI+           R   V + +      +       L   +       +  +       
Sbjct: 522 AIERGYSNVLDWSLRRPFVLLGLATLFVILGASQFTSLPRQLTPSEDRSVIFMIASAPQG 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S +      ++  +I  Q +         +             L M  K   E       
Sbjct: 582 SSLDYTAAKMRELEIIAQPYAENGEARSIMSLVGMGGQINRGFLIMSLKDWAERDRSQQE 641

Query: 652 QNTE 655
              E
Sbjct: 642 IVNE 645



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 90/293 (30%), Gaps = 13/293 (4%)

Query: 546  RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
            R    G S+         +       G+  +    L  +  +  D +++  +       +
Sbjct: 744  RMLLDGSSVADLFVEDDGIPMVMEAGGLPLRSTRDLENIFIKSRDGTMLPMSSIVSIEEE 803

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                +   E+           +            K++ E V       T +    +  + 
Sbjct: 804  AVAPSLTREEQQRAVPVTIAINEGYDLAQAISDMKQVAEEVLPEGNNVTLLSEAAVLEKT 863

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFALFGIEFNLTAVA 724
                 +  + + + + + +  +F+ + +   I  T+   ++  +    L G   N+ +  
Sbjct: 864  TSNVYMTFLFAILVVFLVLAAQFESFMSAFVILCTVPFGVSAAIISIGLTGGSINVYSQI 923

Query: 725  AVLTLIGYSVNDKVVVYDR---MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
             ++ L+G    + +++ +    +R+         S    I  +        V T ++  +
Sbjct: 924  GIILLVGLMAKNGILIVEFANTLREE------GRSVFQAIHDACLIRFRPVVMTVVSTVL 977

Query: 782  SVLPM---AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +P+      G          +  G+  A  S++F+     L +  +     
Sbjct: 978  GGVPLVMAFGAGAEARIEMGWVIVGGLGFATLSTLFVTPAAYLLLMRFTKPRK 1030



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 70/221 (31%), Gaps = 11/221 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        + + T  +    +     +     ++ E+         I   I  V+
Sbjct: 284 NGKRAVGMGIIRSANSNTIDISNDVRAEVARMQEQLPKDVEVNISSDDATFIGGAIKEVV 343

Query: 675 ISA-----IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            S      I + + +         L    T+ + +   L    L G   N+  + A+L  
Sbjct: 344 FSLFLSTSIVVGVMLLFLGSIRVTLIPAVTVPVALIGALVGIWLAGFSANVLTLLALLLA 403

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            G  V+D +VV + +    K        R        E     + T+       +P++  
Sbjct: 404 TGMVVDDAIVVLENI---SKRVHKGQGPRAAAILGTREVFFAVITTTATLAAVFIPISFL 460

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            GSV      F   +A  +++++  ++ +A  +   +   +
Sbjct: 461 PGSVGKLFSEFGFVLAISVMLSSFVALTLAPMMASRLLRTK 501



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 65/528 (12%), Positives = 145/528 (27%), Gaps = 38/528 (7%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R    L+ L ++   +G      +          PS        +    +G S L    
Sbjct: 535  LRRPFVLLGLATLFVILGA-----SQFTSLPRQLTPSEDRSVIFMIASAPQG-SSLDYTA 588

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             +   +    Q Y++   +      +     +  +  + +S  D   ++    ++   LQ
Sbjct: 589  AKMRELEIIAQPYAENGEAR-SIMSLVGMGGQINRGFLIMSLKDWAERDRSQQEIVNELQ 647

Query: 121  GVNSKLNV---DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               SK+        +   +        +  +            E + +I+ +   + G  
Sbjct: 648  RKTSKIPGLKVRVAQPNTLGIRGAGQGLRFAVTG--TNYDELAESADDIVAEMQARYGDK 705

Query: 178  ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                           L    D  R   L  ++                         + D
Sbjct: 706  VGFASVSYETTQPQLLVSV-DRERANDLGLSSD----RIASNLRMLLDGSSVADLFVEDD 760

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            G   ++E                    T            G             + +A  
Sbjct: 761  GIPMVMEAG------------GLPLRSTRDLENIFIKSRDGTMLPMSSIVSIEEEAVAPS 808

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            L        V            +  + +  A      +    LP   N+           
Sbjct: 809  LTREEQQRAVPVTIAI------NEGYDLAQAISDMKQVAEEVLPEGNNVTLLSEAAVLEK 862

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            + S    T      +V +VL           V   ++   V   +  + L G ++ + S 
Sbjct: 863  TTSNVYMTFLFAILVVFLVLAAQFESFMSAFVILCTVPFGVSAAIISIGLTGGSINVYSQ 922

Query: 418  AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             GI+L +GL   + IL+ E       + +SVF ++       +  +  + ++ ++  V L
Sbjct: 923  IGIILLVGLMAKNGILIVEFANTLREEGRSVFQAIHDACLIRFRPVVMTVVSTVLGGVPL 982

Query: 478  ---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
               F  G  A       +   +  +  + + +  A  + ++R+ K + 
Sbjct: 983  VMAFGAGAEARIEMGWVIVGGLGFATLSTLFVTPAAYLLLMRFTKPRK 1030


>gi|188534893|ref|YP_001908690.1| Multidrug resistance protein [Erwinia tasmaniensis Et1/99]
 gi|188029935|emb|CAO97819.1| Multidrug resistance protein [Erwinia tasmaniensis Et1/99]
          Length = 1044

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 63/531 (11%), Positives = 148/531 (27%), Gaps = 38/531 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L   +   G++              +P+                   +    
Sbjct: 9   QRPVATILLMLAVLASGIIAYRMLATSALPQVDYPTIQ--------------VTTLYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +        S     + ITL F+ S   +    +V   +  
Sbjct: 55  SPDVMASSVTAPLERQLGQMSGLSQMTSSSSGGSSVITLQFSLSLSLDVAEQEVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            NS L  D              S V++                 +  +   ++       
Sbjct: 115 ANSLLPTDLPNPPTYKKVNPADSAVITLAAS-SAKQPLTNVQDLVNTRIALKLSQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +    DP  L     T   ++      N +     F  ++   +     
Sbjct: 174 MVTLAGGHQPAIRIRIDPKALAAHGLTLEDVNTLVSNSNVNGSKGGFDGQYHSVTIDAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                      ++                 I +         
Sbjct: 234 QLRSAAQ--------------------YGNLILTYQNGAALRLHDIAQIDEAAENSYQSA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +   +    ++        L+A         V          S S 
Sbjct: 274 WANSSPAIVISVQRQPGANVIAVVDAIKAQLPTLQAALPDGVKLTVLSDRTQTIRASISD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   LV++V F+ +      L+   ++ L+++ T  ++ L G +L   S+  + 
Sbjct: 334 VQFELMLSIALVVMVTFLFLRNVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  +D  I+V E I     + ++   +   G ++   TI     + +   + L F G
Sbjct: 394 IATGFVIDDAIVVVENISRRLEQGETPMEAALKGSAQIGFTIISLTFSLIAVLIPLLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
              G   R FAIT+ +SIL+SM  ++++   +  +++ +   +        
Sbjct: 454 DVVGRLFREFAITLAVSILVSMLISLTLTPMLCAYLLHHIPPERQSRFYRK 504



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 65/156 (41%), Gaps = 7/156 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+ ++++R      L     + L +  T G   L G   N  ++ A+    
Sbjct: 338 LMLSIALVVMVTFLFLR-NVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ ++D +VV + +    +      +  +   K   +     +  + +    ++P+   G
Sbjct: 397 GFVIDDAIVVVENI---SRRLEQGETPMEAALKGSAQIGFTIISLTFSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              G +   FAI +A  I+V+   S+ +   +  ++
Sbjct: 454 DVVGRLFREFAITLAVSILVSMLISLTLTPMLCAYL 489



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +   D  +  +    + +  + +   + +           R      +  +
Sbjct: 813  NQFPAVTVSFNLHDGYSLEQAQRAIGEVSSALAQPAGMTLRWQGETAAFRSATGNTLWLI 872

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + M + + I ++ +   +  ++TL       L    L   EF+L A+  V+ LIG 
Sbjct: 873  LAALLTMYVVLGILYESFIHPVTILSTLPSAAVGALLTLLLSNTEFSLIALIGVILLIGI 932

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   +     T  +S RD I ++        + T+MAA +  LP+ +    
Sbjct: 933  VKKNAIMMIDFALE--AENTQHLSPRDAIHQACLLRFRPILMTTMAALLGALPLMLASGS 990

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     + +  G++ +   ++F    I L+      +  R
Sbjct: 991  GAELRQPLGLVIVGGLIFSQLLTLFSTPVIYLWFDRLAQRFKR 1033


>gi|42523286|ref|NP_968666.1| NolG efflux transporter [Bdellovibrio bacteriovorus HD100]
 gi|39575491|emb|CAE79659.1| NolG efflux transporter [Bdellovibrio bacteriovorus HD100]
          Length = 1033

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/683 (9%), Positives = 184/683 (26%), Gaps = 46/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   ++  +  ++  +G        L +  +D FP                   +     
Sbjct: 9   KRPIFISCIVILMLILGAFS-----LRKMPVDMFPDVTFPILF---------VQVTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++    +        +       I L F      + +  +V   +  
Sbjct: 55  SPLDLEKQVSKLIEDEVGSISGLKTLRSNNLDSVAVIILEFQLGTDIKEVEQEVRNRIGN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +  + ++      +  IV      +     A + + E+I     +    +   
Sbjct: 115 IRRDLPSEIYEPVIRRFDPADQPIVTLAVTTELDEGAAYDLANEVI---KPRFERIKDVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D ++L+    +  ++S   +  +               +     
Sbjct: 172 QVDIFGGRKQEIHVLVDKNKLQDRKISMLQVSQRVIDTSKDIPIGKIENPIDETTLRTNG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                    +            +         + K L       
Sbjct: 232 EF-------------------DSLKQIEEVNVNFVGSDKAILVKDVGRVVKSLEDQKTMG 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL---NIVEERNVGADLGS 358
            +            +   +     E        + A      L     +          +
Sbjct: 273 RVKGKRALLMNVYKQRGANTVAVAEAVKKNIETVNAMLKEKGLKGSVTMVRDTSRPIQMN 332

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               K +  I   L +IV+F  +   +   +   ++  +++    ++  +G ++ L ++ 
Sbjct: 333 VYDVKESIIIGIILCVIVVFFFLGSARSTFITAMALPNSLLGGFVIMWAMGFSINLMTLL 392

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + L +GL +D  I+V E I       +    +   G       +  + +  +     + 
Sbjct: 393 ALSLAVGLLIDDAIVVRENIFRHLEMGKKPKDAALDGTKEVAMAVIATTLVVIAVFGPIS 452

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSRFF 532
           F     G   + F +T+  ++LIS+F A ++   +  ++    +      I    L+ F 
Sbjct: 453 FLQGIVGQFFKQFGLTVVFTMLISLFDAFTVAPMLSAYMAHPNEHVKGTGIVGRMLTAFD 512

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +   + +A  + +G         + +               +         V++ 
Sbjct: 513 KFQTWLEEWYEKALKYTLGNPKKILAGGVVIFVASLGTLAFIPATFLPAADNGEFVVNVE 572

Query: 593 -VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             V S+L +        +        +  +    G+S  ++    M  + +         
Sbjct: 573 LPVGSSLMATSKFTEKVEKIFENDPAVDMVMTIVGNSNNESNKSTMFIRLVERKNRSMNT 632

Query: 652 QNTEIVGPKISRELIRKGIVGVI 674
            + +    K   +  +  IV + 
Sbjct: 633 TDYKESVRKKFPQFEKDAIVSIG 655



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 43/126 (34%), Gaps = 8/126 (6%)

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN-MKLYTTSIS 756
             L   +          G   NL  + A+   +G  ++D +VV    R+N  +       
Sbjct: 366 MALPNSLLGGFVIMWAMGFSINLMTLLALSLAVGLLIDDAIVV----RENIFRHLEMGKK 421

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            +D       E     + T++       P++      G     F + + F ++++   + 
Sbjct: 422 PKDAALDGTKEVAMAVIATTLVVIAVFGPISFLQGIVGQFFKQFGLTVVFTMLISLFDAF 481

Query: 814 FIAAPI 819
            +A  +
Sbjct: 482 TVAPML 487



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 81/246 (32%), Gaps = 4/246 (1%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R R  G   +I         +         D +      ++ N   ++  +    +    
Sbjct: 734 RNRTEGNEQAIYRENGIDYKIRVRFEEMYRDLRSQFNTTLVPNANYNMIPLSRIAQGENA 793

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
              S  N   +  ++                 E+ +    E+ P   +           +
Sbjct: 794 SGFSQINRMNKGRYIQISGNLAKGGALGNISAEVERIIKKEMPPPPGVDFAFKGQADDFK 853

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           ELI   ++ +I+    + + +   ++ +      +  L L +T       +FG   ++ +
Sbjct: 854 ELIENMLLAIILGVTFIYLVLASLYESFITPFTILLALPLAMTGAFLALLMFGKTIDIFS 913

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +  ++ L+G    + +++ D       L    +     I K+    L   + TS+A    
Sbjct: 914 LIGIVLLLGVVAKNSILLVD---YTNHLIHEGVERNTAIIKACRTRLRPILMTSLALIAG 970

Query: 783 VLPMAV 788
           ++P+A+
Sbjct: 971 MIPIAI 976


>gi|206559467|ref|YP_002230228.1| multidrug resistance protein MdtB [Burkholderia cenocepacia J2315]
 gi|198035505|emb|CAR51383.1| multidrug resistance protein MdtB [Burkholderia cenocepacia J2315]
          Length = 1039

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 84/676 (12%), Positives = 188/676 (27%), Gaps = 45/676 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAVKSKTLPLTQVQDLADTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKNGRPVMLTDVATVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++        L+          +          +    
Sbjct: 275 VNADPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVEIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ + G +L   S+  + +
Sbjct: 335 QFELLLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGESGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHSPPPESHRFEARVHQAIDWVIA 514

Query: 540 -------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +   + ++  +F     +     G IQ    A + +   
Sbjct: 515 RYAVALEWVLNRQRSTLVVALLTLGLTALLYVFVPKGFFPAQDTGVIQAITQAPQSISYG 574

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    ++L    +   N D   +F+         +  +  +    + + TE        
Sbjct: 575 AMAERQQALAAEILKDPNVDSLTSFIGVDGSNITLNSGRMLINLKARDERTETAAQIIRD 634

Query: 653 NTEIVGPKISRELIRK 668
             + V       L  +
Sbjct: 635 LQQRVSNITGISLFMQ 650



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    + G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGESGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAIVSLTLVP 483



 Score = 41.6 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDSLARR 1019


>gi|238799014|ref|ZP_04642475.1| Multidrug resistance protein mdtC [Yersinia mollaretii ATCC 43969]
 gi|238717155|gb|EEQ09010.1| Multidrug resistance protein mdtC [Yersinia mollaretii ATCC 43969]
          Length = 1013

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 67/556 (12%), Positives = 159/556 (28%), Gaps = 30/556 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               +   + + +   +    +     +        +      +I L F  +R     A 
Sbjct: 36  VSASMPGADPETMASSIATPLERALGRIAGVNEMTSTSSLGSTRIILQFDLNRDINGAAR 95

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   L    S L                 + ++    +        +       +   +
Sbjct: 96  DVQAALNAAQSLLPTGMPNRPTYRKMNPSDAPIMI-MTLTSDTFTQGQLYDFASTKLAQK 154

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I  +E           L  +  E +PS L     +   +       N  +          
Sbjct: 155 IAQTEGVSDVSVGGSSLPAVRVELNPSALFNQGVSLDAVRQAISAANVRRPQGSVDSPEQ 214

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    ++                      +    +                N+   
Sbjct: 215 HWQVQANDEIKTA--------------------EGYRPLIVHYNNGSPVRLQDVANVVDS 254

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +  V +  +         + S +   +   T++        LRA         + +    
Sbjct: 255 VQDVRNAGMSDGKSAVLLVISREPGANIIATVDRIRAELPALRASIPASIELNIAQDRSP 314

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + +  I   LV++V+F+ +  G+  L+   ++ +++I T   + L G +L 
Sbjct: 315 TIRASLEEVERSLLIAVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFTAMYLCGFSLN 374

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I+V E I            +   G      T+   +I+ +  
Sbjct: 375 NLSLMALTIATGFVVDDAIVVLENISRHLEAGVKPMVAALRGVREVGFTVLSMSISLVAV 434

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK------KMKSID 524
            + L    G      R FAIT+ +SI IS+  ++++   M   ++R +       ++   
Sbjct: 435 FIPLLLMEGLPGRLFREFAITLSVSIGISLVISLTLTPMMCAHLLRARPAGQPQPIRGFG 494

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
              L+        +       R+  V +    ++     +      +     G +   + 
Sbjct: 495 KVLLAIQQGYGRSLNWVLGHTRWVMVVLLSTIALNVWLYISIPKTFFPEQDTGRMMGFIQ 554

Query: 585 ANRPVDLSVVRSNLES 600
           A++ +    ++  L+ 
Sbjct: 555 ADQSISFQAMQQKLKD 570



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V + ++S+Q    +  +       LV  +    + +A    +     
Sbjct: 235 VHYNNGSPVRLQDVANVVDSVQDVRNAGMSDGKSAVLLVISREPGANIIATVDRIRAELP 294

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S   N         R  + +    ++I+   +++ +++  +     L     
Sbjct: 295 ALRASIPASIELNIAQDRSPTIRASLEEVERSLLIAVALVILVVFLFLRSGRATLIPAVA 354

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +    
Sbjct: 355 VPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPMV 411

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + + E     +  S++     +P+ +     G +   FAI ++  I ++   S+ + 
Sbjct: 412 AALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAITLSVSIGISLVISLTLT 471

Query: 817 A 817
            
Sbjct: 472 P 472



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 95/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D  + +     V++ +TE+   ST++ +     ++ +E +R  +  ++ +   
Sbjct: 792  TISFNLPDGGSLSEATAAVERAMTELGVPSTVRGSFSGTAQVFQETLRSQLWLIMAAIAT 851

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 852  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 911

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     +S RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 912  MMVDFALEAQRNGN--LSARDAIFQASLLRFRPILMTTLAALFGALPLVLGSGDGAELRQ 969

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+VV+   +++    + L+    R++  +
Sbjct: 970  PLGITIVGGLVVSQLLTLYTTPVVYLYFDRLRSRFNK 1006


>gi|313159645|gb|EFR59003.1| heavy metal efflux pump, CzcA family [Alistipes sp. HGB5]
          Length = 1046

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 63/605 (10%), Positives = 169/605 (27%), Gaps = 51/605 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L+  +   GL   +        +D++P              +     +    
Sbjct: 9   RKPVSTVLLFVGVMVFGLFSLM-----NLAVDQYPEIEIP---------QISVITMYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          +   + IT+ F         A+++   +  
Sbjct: 55  NAAEIETNITRVLEDNLNTVSNLKKLTSKSQDNVSMITVEFEYGSDLNEGANEIRDVVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D     +   +   I +++     ++      +       + ++ +   +   
Sbjct: 115 VQSMLPDDIDYPTIFKFSTSMIPVMMIAVTAEESYPALSKLLD---DKLVNVLNRVDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    DP++L     T  ++                             
Sbjct: 172 AVSVIGAPEREVQVNVDPAKLDAYNLTVEQLGQIIAAE--------------------NV 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +       G +     A+ + K    +  +     G R         I   L       
Sbjct: 212 NIPSGTIDIGNNTFNIKADGEFKLSDELRKVVVSNAGGRTVMLSDVAEIRDTLEKFTMDE 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      + +   ++  +    +         ++          +          +   
Sbjct: 272 RVNGQRGVRVMFQKQSGANTVNIVHEIQKRLPEIQKTLPKDVKMELIFEGSQEITDAIGS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V++V+ + +   +  L+   +I +++I +   L   G+TL + S++ + 
Sbjct: 332 LSETIMYAFIFVVLVVMIFLGRWRATLIICMTIPVSLICSFIYLFATGSTLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG+ VD  I+V E I     +  S   +     +  + ++  + +  +   + L    
Sbjct: 392 IAIGMVVDDAIVVLENITTHIERGSSPKEAAIYATNEVWLSVIATTLVVVAVFLPLTMVP 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR-----------YKKMKSIDINP 527
              G   R     + + + +S   AIS+   M  ++++               K ID   
Sbjct: 452 GMAGILFRELGWIVTIVVCVSTTAAISLTPMMSAYLLKLDGGVHDYKGVGIVYKPIDRAL 511

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                +    +       R     +  LF +    +       +       I   V   +
Sbjct: 512 EWLDDIYARSLNWVVRHRRITIFSMMGLFVVSLGLITRVPTEFFPPSDNSRISAMVELEQ 571

Query: 588 PVDLS 592
            + + 
Sbjct: 572 NIGVE 576



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/170 (17%), Positives = 60/170 (35%), Gaps = 9/170 (5%)

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G +GV+   I +L+YI +        F    + T+    T       +     +L A+  
Sbjct: 865  GDLGVLFILIVILVYIVMATQFESLLFPFIIMFTIPFAFTGVFLALWMTSTPLSLIALIG 924

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             + L+G    + +V+ D M     L        D +       L   + TS    + +LP
Sbjct: 925  AIMLVGIVTKNGIVMVDYMN---LLVERGSGVFDAVIAGGKSRLRPVLMTSFTTILGMLP 981

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +A+    G        I +  G+  +   ++FI   +     +   +  +
Sbjct: 982  LAIGTGAGSETWQPMGIAVIGGLTCSTLLTLFIIPALYSVFVNRSQRKEK 1031



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/231 (11%), Positives = 79/231 (34%), Gaps = 8/231 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ +R  LE   + +            + + Q           + + + +    +    
Sbjct: 256 DVAEIRDTLEKFTMDERVNGQRG--VRVMFQKQSGANTVNIVHEIQKRLPEIQKTLPKDV 313

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++       +I+  +       +      +L+ +    +W   L    T+ + +  +  
Sbjct: 314 KMELIFEGSQEITDAIGSLSETIMYAFIFVVLVVMIFLGRWRATLIICMTIPVSLICSFI 373

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           +    G   N+ +++++   IG  V+D +VV + +           S ++    + NE  
Sbjct: 374 YLFATGSTLNIISLSSLSIAIGMVVDDAIVVLENI---TTHIERGSSPKEAAIYATNEVW 430

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
              + T++      LP+ +  G            +   + V+ +++I +  
Sbjct: 431 LSVIATTLVVVAVFLPLTMVPGMAGILFRELGWIVTIVVCVSTTAAISLTP 481


>gi|294650610|ref|ZP_06727965.1| acriflavin resistance protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292823493|gb|EFF82341.1| acriflavin resistance protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 1046

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 73/523 (13%), Positives = 153/523 (29%), Gaps = 40/523 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ M+   GLL           + +FP                     L   
Sbjct: 9   RNPIPSILLFIMLGLAGLL-----CFHWMKIQQFPDIELPMVT---------VTAALPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + L+       +++     +T  F   +  +   D V   +  
Sbjct: 55  APPQLETEVARKIENSIATLQGLRNQYTNIQDGVVSVTAEFQLEKPLQEAVDDVRNAVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D +  ++         I+       ++   A   S  +       +   +   
Sbjct: 115 VRSDLPADLRDPIVSKINLSGSPILTYTIQSPKMDEEA--LSWFVDYDISRAMLQVKGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  Q+  E DP +L  L  T   +S    L      G    +     S     
Sbjct: 173 AVSRVGGVTRQVEVELDPEKLLALNATATDISRQLRLLQQDASGGQTKIGGSEQSIRTIA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   EI  + +                         R         I   +A      
Sbjct: 233 TVQTAAEIGAMDIAL--------------------SDGRHIRLDQVATIHDGIAERRSAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     +     S     +   +    L+A              V     +   
Sbjct: 273 LLNGKPVIGFEITRSKGASEVDVEKGVILALDKLKASHP-DLEITEAFNFVQPVEENYKG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +  ++A  ++ L+++  +  +  LG TL + ++  + 
Sbjct: 332 SMALLYEGALLAVLVVWLFLRDWRATIIAATALPLSILPAMIGMYYLGFTLNIVTLLAMS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIIRHLRMGKTPYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G     F  T  L+I  S+  A  +   M  +I++    K
Sbjct: 452 GIAGKFFVQFGWTASLAIFASLLVARLLTPMMAAYILKPWVGK 494



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 75/244 (30%), Gaps = 6/244 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + + +   R + L  V +  + +     +              + +    V   + + 
Sbjct: 241 GAMDIALSDGRHIRLDQVATIHDGIAERRSAALLNGKPVIGFEITRSKGASEVDVEKGVI 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
           +   K+    P   I         +         +    + +A+L+       W   + A
Sbjct: 301 LALDKLKASHPDLEITEAFNFVQPVEENYKGSMALLYEGALLAVLVVWLFLRDWRATIIA 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L I   +      G   N+  + A+  ++G  V+D +V  + +   ++      +
Sbjct: 361 ATALPLSILPAMIGMYYLGFTLNIVTLLAMSLVVGILVDDAIVEIENI---IRHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
             +   ++ +E     + T+       LP A   G        F    +  I  +   + 
Sbjct: 418 PYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFVQFGWTASLAIFASLLVAR 477

Query: 814 FIAA 817
            +  
Sbjct: 478 LLTP 481



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 83/220 (37%), Gaps = 8/220 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        ++     +   V +  T      ++  T I   ++ +EL     + ++
Sbjct: 815  NRMRNINLNIELNNQPLGDIAAQVDQLPTMQNLPPSVTRTNIGDAEVMQELFSSFGLAML 874

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               + + + + + FK +   +  +  L L +        L    F++ ++  ++ L+G +
Sbjct: 875  TGVLCIYVVLVLLFKDFLQPITILVALPLSLGGAFVLLLLAKSSFSMPSLIGLIMLMGIA 934

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ D     +       S  + +  + ++     + T++A    +LP+A  G   
Sbjct: 935  SKNSILLVD--YAIIARNEKGYSRFNALLDACHKRARPIIMTTLAMGAGMLPIA-LGVGT 991

Query: 794  IGSF----AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              SF    AI +  G++ +   S+ +   +  FI D   K
Sbjct: 992  DPSFRSPMAISVIGGLITSTFLSLLVIPVVYTFIDDIHQK 1031


>gi|260775075|ref|ZP_05883974.1| RND multidrug efflux transporter [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260608992|gb|EEX35152.1| RND multidrug efflux transporter [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 1040

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 79/609 (12%), Positives = 180/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S     + IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSSSVLGTSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRIWLDPAKMAALGKTATDVMNVLNANNYQSAAGQAVGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+  + ++    +    +    V +       R         +           
Sbjct: 233 QVSNVEELKNLVVSSDEGDVTRLSDIAKVTLEKSHDVYRASANGKEAVV----------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +          L   L           V   +  A   S + 
Sbjct: 282 ---------VAINAAPSANPINIAADVLDLLPQLERNLPSNIDMNVMYDSTIAINESINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A  A +VLIV+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTIAEAALIVLIVITLFLGSFRAVMIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +        K  + +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANETPSKFEQKVHSVLDGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +               I+F+   +   F        + KG + L   A    +L  
Sbjct: 513 YERMLGAVMKHRPVVIGFAIIVFASLPMLFKFIPSELAPSEDKGVVMLMGTAPSNANLDF 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 MQNTMNDVN 581



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 84/257 (32%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +         LS +                   E   +        + +     +  + 
Sbjct: 244 VVSSDEGDVTRLSDIAKVTLEKSHDVYRASANGKEAVVVAINAAPSANPINIAADVLDLL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++   +P +   N          E I + I  +  +A+ +LI I +    +   +  I 
Sbjct: 304 PQLERNLPSNIDMNVMYDSTIAINESINEVIKTIAEAALIVLIVITLFLGSFRAVMIPIV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +          G  +NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSLIGVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGESPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +       ++
Sbjct: 481 SPMMCSKMLKANETPSK 497



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 77/786 (9%), Positives = 198/786 (25%), Gaps = 47/786 (5%)

Query: 67   NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF--ADSRFKENIADKVTLFLQGVNS 124
             G +   SD  +  L+K      +    +  + ++   A S    NIA  V   L  +  
Sbjct: 249  EGDVTRLSDIAKVTLEKSHDVYRASANGKEAVVVAINAAPSANPINIAADVLDLLPQLER 308

Query: 125  KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
             L  +   N++                         E   E+I+   +   I    I   
Sbjct: 309  NLPSNIDMNVMY-----------------DSTIAINESINEVIKTIAEAALIVLIVITLF 351

Query: 185  GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                  + +P    P  L  +      M F       +    +  +  + D         
Sbjct: 352  LGSFRAVMIPIVTIPLSLIGVAMVMQAMGFSW--NLMTLLAMVLAIGLVVDDAIVVLENV 409

Query: 245  DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            D+    G     A      +   PV+ ++           +     G             
Sbjct: 410  DRHIKLGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL---TL 466

Query: 305  APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
            A  +  +            +               +   L+ +  R              
Sbjct: 467  AGSVFVSGIVALTLSPMMCSKMLKANETPSKFEQKVHSVLDGMTNRYERMLGAVMKHRPV 526

Query: 365  TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
                   +   +  +          ++    + ++ T    + L       +    +L  
Sbjct: 527  VIGFAIIVFASLPMLFKFIPSELAPSEDKGVVMLMGTAPSNANLDFMQNTMNDVNRILSD 586

Query: 425  GLAVDSNILVNERIREENRKN---QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
               V    +                  +   +   S   + +           V  F   
Sbjct: 587  QPEVAYAQVFTGVPNSNQAFGIASMVPWSEREASQSEVANRVTGLVGHVPGMAVTAFQMP 646

Query: 482  GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
                 G  + +   I            A  I          +       +      I I 
Sbjct: 647  ELPGAGSGLPVQFVITTPNAFESLFTIATDILGEVKSNPMFVYSELDLNYDSATMKINID 706

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVRSNLES 600
              +A  +GV +  + +  S  +   +     ++ +    +  V     ++   + +    
Sbjct: 707  KDKAGAYGVTMQDIGTTLSTMMSDGYVNRIDLNGRSYEVIPQVERKWRLNPESMNNYYVR 766

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI--------- 651
                           + +   +  P  +   +  +  V    T +               
Sbjct: 767  AADNRAVPLGSLITIDVVAEPRSLPHFNQLNSATIGAVNAPGTAMGDAVNWLESIATEKL 826

Query: 652  ---QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
                N + +G           +     ++   + + + I+F+     +  + ++ L I  
Sbjct: 827  PNGYNHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPIVIMVSVPLAICG 886

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L   A      N+ +   ++TL+G      +++ +  ++         +  + + ++  
Sbjct: 887  ALIALAWGAASMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKLGKT--EAVMEAAK 944

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++
Sbjct: 945  VRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYL 1004

Query: 824  YDWRAK 829
             +    
Sbjct: 1005 AEKHKP 1010


>gi|170742538|ref|YP_001771193.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
 gi|168196812|gb|ACA18759.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
          Length = 1093

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/583 (11%), Positives = 163/583 (27%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL   L     +  +   P       +             +    
Sbjct: 10  RPVATTLLSIGVLLAGLFAFL-----RLPVAPLPQVDFPTIL---------VQAQMAGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +    Q +I L F+  R     A  V   +   
Sbjct: 56  PETMAATVAAPLERRLGQIADVDQMTSTSSTGQTRIVLQFSLDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    ++N          + +L    +     +              ++   E    
Sbjct: 116 RADLPTALRQNPTYRKFNPADAPILI-VGLTSKTLNPSSLYDSAATVVQQKLSQLEGIGN 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   L  +  E +P  L                                        
Sbjct: 175 VDASGSSLPAVRVELEPGALFHYGIGLE--------------------GIRAAIASANAN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +        AN   +      DI                 +   +    +  +
Sbjct: 215 SPKGAIETVTRRYQLYANDQGRVAADYQDIVVAYRNGAAVRLRDVGEVVDGVEDRRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        I   +   +   T++        ++A        +V          S    
Sbjct: 275 VNGRPGVLLIVYKQPGGNVVETVDRLKAALPQIKAALPGDIDLVVTGDRSLTIRASLREA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+F+ +   +  L+   ++ ++++ T A + L   +L   S+  +++
Sbjct: 335 ERTLMISVGLVILVVFVFLRSARATLIPAVAVPVSLVGTFAAMYLCNYSLDNISLMALII 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I+    + +    +  +G      T+   +++ +   + +   G 
Sbjct: 395 AAGFVVDDAIVVLENIQRHIEEGRPRLEAALLGAREVGFTVLSMSLSLVAVFMPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   + FA+ + L+ILIS+  +++    M   ++R +                 D + 
Sbjct: 455 LIGRFFQEFAVVLSLAILISLVLSLTTTPMMCARLLRPEPHGRRPNLLARGLEAGFDWVL 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R+  + +    L  +  +  +  +   + I  KG     
Sbjct: 515 RGYGRSLGFALRHGALVMLVMVGAIALNVWLFVIVPKGFFPQQ 557



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 64/165 (38%), Gaps = 8/165 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +  + +++++++R      L     + + +  T     L     +  ++ A++   
Sbjct: 338 LMISVGLVILVVFVFLR-SARATLIPAVAVPVSLVGTFAAMYLCNYSLDNISLMALIIAA 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         +       E     +  S++     +P+ + G
Sbjct: 397 GFVVDDAIVVLENI---QRHIEEGRPRLEAALLGAREVGFTVLSMSLSLVAVFMPILLMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G +      FA+ ++  I+++   S+    P++         + R
Sbjct: 454 GLIGRFFQEFAVVLSLAILISLVLSL-TTTPMMCARLLRPEPHGR 497



 Score = 46.2 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 28/164 (17%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ + + +   + I ++ +   +  ++TL       +    L G EF + A+ A+  LIG
Sbjct: 919  ILAALLTVYAVLGILYESFVHPITILSTLPSAGIGAILALMLTGEEFGVIALIAIFLLIG 978

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
                + +++ D         +  +  R+ I ++        + T++AA +  LP+ + GG
Sbjct: 979  IVKKNAIMMIDFALD--AQRSRGVDPREAITQACLLRFRPILMTTLAALLGALPLILDGG 1036

Query: 792  ---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                +     I +  G++V+   +++    + L +   R +  R
Sbjct: 1037 EGSELRRPLGIAIVGGLIVSQVLTLYTTPVVYLVLDRLRLRVTR 1080


>gi|87301393|ref|ZP_01084234.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 5701]
 gi|87284361|gb|EAQ76314.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 5701]
          Length = 1134

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 154/521 (29%), Gaps = 33/521 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+   +I   GL+       P   ++  P   P              + +    +
Sbjct: 10  RPVLTVVCSLLIVIGGLISI-----PLLPVENLPDIAPPTVT---------VNALYNGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++    I   S     + IT+SFA     +     V   +  
Sbjct: 56  AISVEEGVTNVLEQQINGVENMDFITSSSAASGTSSITVSFASGTDGDINQVNVQNRVAL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQIGISES 179
              +L  + +++ +V        +++     +           S  + +  +D+I   + 
Sbjct: 116 AQPQLPEEVRQSGVVVNKASNSILLVYNFGSEDANKPYSTEFISGLLDQTLLDKIKRVKG 175

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                 +    +      DP RL     ++A +       +        G          
Sbjct: 176 VGNVTIAG-QTLAFRLWLDPDRLAANRLSSADVVNALRSQSRLVPAGQVGGEPAPKGQKF 234

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
            + V+ +  +                    + +     G                + V +
Sbjct: 235 TFTVQLQGRLRSSEEFSN------------LILRSTGDGGLVRLRDVGRVELGAESYVSN 282

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L A      +    +  +          +     +   P                S 
Sbjct: 283 ATDLRAVPSVGLLVYQLSGSNALEVSRGVQEVLEEFSSTIPPGIKIEKIYDVTDFINASI 342

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV+++LF+ +   K  LV   +I + ++ T   + + G +L   ++ G
Sbjct: 343 KGVTNSLRDAVVLVVLILFLFLQNWKATLVPGIAIPVALVGTFMFVKVAGFSLNQLTLFG 402

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL  GL VD  I V E    +  +  +   +     +  +  +  +++      + + F
Sbjct: 403 LVLATGLVVDDAITVIEDTSSKKAQGMTALQAAKSTMNELFGAVIATSLVLFAVFLPVLF 462

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           F    G   + FA T+  S+ IS F A++    +   ++  
Sbjct: 463 FPGATGTIYKQFAATIIFSVAISTFNALTFSPMLSALLLAR 503



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T  F  + G   N   +  ++   G  V+D + V   +     
Sbjct: 367 WKATLVPGIAIPVALVGTFMFVKVAGFSLNQLTLFGLVLATGLVVDDAITV---IEDTSS 423

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                ++       ++NE  G  + TS+  F   LP+  + G+       FA  + F + 
Sbjct: 424 KKAQGMTALQAAKSTMNELFGAVIATSLVLFAVFLPVLFFPGATGTIYKQFAATIIFSVA 483

Query: 807 VAASSSIFIAAPILLFIYDWR 827
           ++  +++  +  +   +    
Sbjct: 484 ISTFNALTFSPMLSALLLARE 504



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 79/237 (33%), Gaps = 17/237 (7%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L  +   + +          L R     G         E +K        L         
Sbjct: 887  LAEVFTVEPATGPAVIPHFNLFRSIKVEGSPAPGRSSGEAIKGMQDTFSQLGINGLNFDW 946

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALF 714
                  E+    +  VI +   +++Y+ +      +   L  + T+   +   L F A  
Sbjct: 947  TGLSREEVKAGALAVVIFAFGILVVYLVLAAQYESYVDPLIILMTVPTAMLGALAFLAAR 1006

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLYTTSISFRDLIDKSINETLG 770
            G   N+ A   ++ LIG +  + +++ D    RM +         S      ++    L 
Sbjct: 1007 GEVLNIYAQVGLVMLIGLAAKNGILIVDLANQRMAE-------GASAIQAAREAAESRLR 1059

Query: 771  RSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIY 824
              + T++++    LP+ +  G+      S    +  G++VA   S+F+     + I 
Sbjct: 1060 PILMTAISSLFGFLPLVLANGAGARSQASLGTVVFGGLMVATVLSLFVVPVFYVVIK 1116


>gi|170703252|ref|ZP_02894052.1| acriflavin resistance protein [Burkholderia ambifaria IOP40-10]
 gi|170131840|gb|EDT00368.1| acriflavin resistance protein [Burkholderia ambifaria IOP40-10]
          Length = 1037

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 70/542 (12%), Positives = 150/542 (27%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAITSKTLPLTQVQDLTDTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKSGRPVMLTDVAKVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++        L+          V          +    
Sbjct: 275 VNAEPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVQVVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELLLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  +   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGHTSLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHSPPPESHRFEARVHRAIDWVIA 514

Query: 540 IQ 541
             
Sbjct: 515 RY 516



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGHTSLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAIVSLTLVP 483



 Score = 41.6 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGAGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDSLARR 1019


>gi|84394499|ref|ZP_00993210.1| putative multidrug resistance protein [Vibrio splendidus 12B01]
 gi|84374876|gb|EAP91812.1| putative multidrug resistance protein [Vibrio splendidus 12B01]
          Length = 1040

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 76/609 (12%), Positives = 177/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAIF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S     + IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSSSVLGSSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D+++S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELVSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DPS++  +  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPSKMAAVNLTATDVMSVLDANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                     ++                 +    +  +   
Sbjct: 233 QVSNTEELE--------------------NLVVKSGEGEIIRLSDIAKVSLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           +   +  A   S   
Sbjct: 273 SANGKEAVVAAINAAPSANPINIAADVLELLPQLEKNLPSNISMNIMYDSTIAINESIQE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTILEAALIVLVVITLFLGSFRAVLIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIAMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ +S   A+++   M   +        K  + +          
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIVALTLSPMMCSKMLKAHAEPSKFEQKVHSVLDGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +         +     I+F+   +   F        + KG I L   A    +L  
Sbjct: 513 YERMLGAVMQHRPVFIGFAIIVFASLPLLFKFIPSELAPSEDKGVIMLMGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 MQNTMNDVN 581



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 7/235 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + LS +                   E            + +     +  +  ++ + +
Sbjct: 251 EIIRLSDIAKVSLEKSHDIYRASANGKEAVVAAINAAPSANPINIAADVLELLPQLEKNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I++ I  ++ +A+ +L+ I +    +   L  I T+ L + 
Sbjct: 311 PSNISMNIMYDSTIAINESIQEVIKTILEAALIVLVVITLFLGSFRAVLIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++ 
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIAMMGGITGSLFKEFALTLAGAVFVSGIVALTLSP 482



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     L  + ++ L I   L 
Sbjct: 830  YNHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++       +    + + ++    L
Sbjct: 890  ALAWGAATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNHKTR--IEAVMEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDW 826
               + T+ A    ++P+    G      F+I +    G+ +    ++F+   I  ++ + 
Sbjct: 948  RPILMTTAAMIAGLIPLMYASGAGAAQRFSIGIVIVAGLAIGTIFTLFVLPVIYSYLAEK 1007

Query: 827  RAK 829
               
Sbjct: 1008 HKP 1010


>gi|281356424|ref|ZP_06242916.1| acriflavin resistance protein [Victivallis vadensis ATCC BAA-548]
 gi|281317116|gb|EFB01138.1| acriflavin resistance protein [Victivallis vadensis ATCC BAA-548]
          Length = 1047

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 61/590 (10%), Positives = 164/590 (27%), Gaps = 45/590 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +  L  ++  IG+     +  P+  +D  P+      +              +  
Sbjct: 9   QRPIAMTALIIVLVMIGI-----SLYPRISIDLLPNMEIPTVL---------VRCEYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S L           + + +I L F      +  A  +   L  
Sbjct: 55  SPTEIEVEIVKRIEDAVSSLDGIKHITSMSIEDEARIQLEFNMGTDVDVAATDIREALNR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L     +  +        ++       D+      +          D+        
Sbjct: 115 IREDLPDGANEPTIRKIDTNATTVAQVFLVGDRTQD---DLYDYADDVIADRFSSVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +        +Q+    D  +L  +  +   +       N  +                  
Sbjct: 172 EVRVYGANEMQIHVLLDREKLTAMNLSINDVVAKLEQNNVREPLGRIQFDKG-------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E  V   G            K  + +  +   +   +R +      +      V    
Sbjct: 224 --EKNVTFDGD----------FKDFEQIRALEVGKFKNKRVYLRDVAEVKFMSREVRSKA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS--LPIKLNIVEERNVGADLGSD 359
            +      +     K + +    I         +            +    +      S 
Sbjct: 272 YVNGQPAARFRIVKKGEANAIEVINGIRQRFDAMVKNGELPTGMELVWFTDSGAFIQASV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      L  ++LF+ +   K   +   S+ ++V++T A+++    +  + ++  
Sbjct: 332 DDAWSSIVTGIILTAVLLFLFLHEPKSTFIVMISMPISVVVTFAVMAYFNYSFNIMTLLS 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +   +G+ V ++I+V E I +   + + +  + + G     + +  S +T ++  V +  
Sbjct: 392 LGCSVGVLVTNSIVVIENIFKHLDRGEPIKTAAERGTGEVIAAVSASALTNVVVFVPVMM 451

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDINPLSRFFL 533
                   +  FA  M  + L+S+F + ++   +   +++ KK +         L   FL
Sbjct: 452 MTTRIGSMMVPFAGVMVGATLVSLFISFTLTPILACVLLKRKKKRGSAPEKRGWLQTMFL 511

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             D       R     +  +       +  +              + L  
Sbjct: 512 PWDMGYDWLCRKFDRSIEWTARHPKSLMLTVLALAAGVSFWIVPQVGLSF 561



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 81/240 (33%), Gaps = 6/240 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L  +            +K   + L        A   V E + K   E +P        
Sbjct: 792  EALAEITEDARPVVVNRYDKVRTMWLYANTAPGAALGTVSEAIGKLAQESLPPGYGVRMS 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                 ++        V V+ + +  L+   I   W      + T+ L            G
Sbjct: 852  GNVELMNETAREFMQVIVLATILTYLLIAAIMESWTRPFLIMFTVPLGFLGMYATLWAAG 911

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +  ++  +   + +IG  VN+ +++ D   +   L  + ++    +  +        V T
Sbjct: 912  MSMSMMGLLGGVMMIGIVVNNAILIMD---ECAALVKSGVTTHKAMLLATQSKFRPIVMT 968

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S+A+   +LPMA     G  +  S  + +  G+ +A+  ++++   +        AK  R
Sbjct: 969  SIASVAGMLPMAFGTGLGSELRSSCGMGVVGGLTIASLLTLYVIPALYFIFVHDTAKPRR 1028



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 75/247 (30%), Gaps = 12/247 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-----IVPL 648
           +R   E   +                R +           V+  ++++         +P 
Sbjct: 254 LRDVAEVKFMSREVRSKAYVNGQPAARFRIVKKGEANAIEVINGIRQRFDAMVKNGELPT 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                         +  +      ++   I   + +     +       + ++ + +  T
Sbjct: 314 GMELVWFTDSGAFIQASVDDAWSSIVTGIILTAVLLFLFLHEPKSTFIVMISMPISVVVT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A F   FN+  + ++   +G  V + +VV + +    K        +   ++   E
Sbjct: 374 FAVMAYFNYSFNIMTLLSLGCSVGVLVTNSIVVIENI---FKHLDRGEPIKTAAERGTGE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +     +++   +  +P+ +     GS++  FA  M    +V+   S  +   +   + 
Sbjct: 431 VIAAVSASALTNVVVFVPVMMMTTRIGSMMVPFAGVMVGATLVSLFISFTLTPILACVLL 490

Query: 825 DWRAKNA 831
             + K  
Sbjct: 491 KRKKKRG 497


>gi|312796744|ref|YP_004029666.1| Acriflavin resistance plasma membrane protein [Burkholderia
           rhizoxinica HKI 454]
 gi|312168519|emb|CBW75522.1| Acriflavin resistance plasma membrane protein [Burkholderia
           rhizoxinica HKI 454]
          Length = 1037

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 65/535 (12%), Positives = 141/535 (26%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVSLQFLPLSALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPGLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +L+   I        +    +  +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPILT-LAITSKTLPLTQVQDLVDTRLAQKISQVGGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F       +      
Sbjct: 175 VSLSGGQRPAIRIQANPRALAAYGLNLDDLRTTISNLNVNTPKGNFDGPTRAYTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D                                  R         I         G  
Sbjct: 235 LTDA--------------------SAYHSAVVAYKNGRPVMLTDVAQIVSGPENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   L+          V          S    
Sbjct: 275 VDTEPAIILNVQRQPGANVIQVVDNIKALLPQLQQSLPASVETRVLTDRTTTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        LV++V+++ +   +  ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELVTAVVLVVLVMYLFLGSWQATVIPSLSVPLSLIGTLAVMYLYGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I        +   +   G  +   TI    ++ L   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENITRYVEDGDTPLQAALKGSKQIGFTIISLTVSLLAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G     FAIT+ ++I+ S   ++++V  +   ++R+   K             
Sbjct: 455 VVGRLFHEFAITLAVAIVFSAVVSLTLVPMLCAKLLRHSPPKESGRFEARARAFF 509



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +    ++ L +  TL    L+G   +  ++ A+    G+ V+D +V+ + +    
Sbjct: 355 SWQATVIPSLSVPLSLIGTLAVMYLYGFSLDNLSLMALTIATGFVVDDAIVMIENI---T 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      +      K   +     +  +++    ++P+   G   G +   FAI +A  I
Sbjct: 412 RYVEDGDTPLQAALKGSKQIGFTIISLTVSLLAVLIPLLFMGDVVGRLFHEFAITLAVAI 471

Query: 806 VVAASSSIFIAAPILLFIYDWRAKN 830
           V +A  S+ +   +   +       
Sbjct: 472 VFSAVVSLTLVPMLCAKLLRHSPPK 496



 Score = 42.4 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 79/197 (40%), Gaps = 6/197 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              ++ +++   +I    + Q          +  +   +  ++ + + M I + + ++ + 
Sbjct: 823  AAVKAIEQAKDDIGLPPSFQIRYQGAALAFQASLSDQVFLILAAIVTMYIVLGVLYESFV 882

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L   ++ G + ++  +  ++ LIG    + +++ D   +  +  
Sbjct: 883  HPITILSTLPSAGVGALLALSVTGHDLDIIGIIGIVLLIGIVKKNAIMMIDFALEAQREQ 942

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
                  RD I ++        + T+MAA +  LP+ +    G  +     I +A G+VV+
Sbjct: 943  GKR--PRDAIYQACLLRFRPILMTTMAALLGALPLMLGTGSGHELRHPLGIAIAGGLVVS 1000

Query: 809  ASSSIFIAAPILLFIYD 825
               ++F    I L    
Sbjct: 1001 QLLTLFTTPVIYLGFDR 1017


>gi|260772695|ref|ZP_05881611.1| acriflavin resistance protein [Vibrio metschnikovii CIP 69.14]
 gi|260611834|gb|EEX37037.1| acriflavin resistance protein [Vibrio metschnikovii CIP 69.14]
          Length = 1024

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 60/565 (10%), Positives = 161/565 (28%), Gaps = 40/565 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   I  +GL   +        + +FP       IS                
Sbjct: 9   KKPILASVVSLFIILLGLRAIM-----DMNVRQFPEI-QNAVIS--------VSTTYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + D + GF+    +   +  +     V +     + I               ++   +  
Sbjct: 55  DADLIQGFITTPLEREIAAAEGIDYLVSTSVAGNSTIEAYLRLDYDPNQALTQIAAQVNK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + ++ ++     + ++ +      + +  +  + +  ++R    Q+       
Sbjct: 115 VRSELPENAREPVVTLKVGESVAAMYLAFYSEVLGDN--QITDYLVRVVEPQLSTIPGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D  ++     T + ++      N                 G   
Sbjct: 173 RAEILGARTFAMRVWLDSVKMAAYGLTGSDVATALRSNNVLAAL------------GRTK 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                ++++          F          +     G           +           
Sbjct: 221 GQMVAIDLTAATDLRDVEEFKQ--------LVVSSDGQSVVRLADVAEVELGAENYESSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAM-LRAGSLPIKLNIVEERNVGADLGSDS 360
                             +    I     +    +           +   +      +  
Sbjct: 273 SFNGLAATFIGIEVSPDANALDVIADVRQVWDQDIIPQLPQGLSAYIAYDSTEYIENAID 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  +   +V+ V++  +   +  ++   +I +++I T  L+ LLG ++ L ++  +
Sbjct: 333 EVVMSIILALAIVVFVIYAFLGSFRSVIIPAVAIPVSLIGTFFLMWLLGFSINLLTLLAM 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I++ E I     + +S   +   G       I   + T +   + + F 
Sbjct: 393 VLAIGVVVDDAIIMLENIHRHIEEGKSRIDAAIQGARELAWPIITMSTTLVAVFLPIGFV 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G     FA T+  S+++S   A+++   M  +I++     +     L ++      
Sbjct: 453 GGLTGVLFVEFAFTLAASVILSGIVALTLSPVMCAYILKPHSSDNKKEKSLEQWLDKQFD 512

Query: 538 IAIQFMRARFWGVGISILFSICSIC 562
                 +     +  S    +    
Sbjct: 513 RLHHSYQRTLHSLLDSKSVVLTFGA 537



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 80/248 (32%), Gaps = 10/248 (4%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V    L +         N        + +            V ++  + I   +P   
Sbjct: 256 ADVAEVELGAENYESSVSFNGLAATFIGIEVSPDANALDVIADVRQVWDQDIIPQLPQGL 315

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLG 709
                    +     I + ++ +I++   ++  I      +   +     + + +  T  
Sbjct: 316 SAYIAYDSTEYIENAIDEVVMSIILALAIVVFVIYAFLGSFRSVIIPAVAIPVSLIGTFF 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G   NL  + A++  IG  V+D +++ + +    +      S  D   +   E  
Sbjct: 376 LMWLLGFSINLLTLLAMVLAIGVVVDDAIIMLENIH---RHIEEGKSRIDAAIQGARELA 432

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPIL--LFIY 824
              +  S       LP+   G   G +   FA  +A  ++++   ++   +P++    + 
Sbjct: 433 WPIITMSTTLVAVFLPIGFVGGLTGVLFVEFAFTLAASVILSGIVAL-TLSPVMCAYILK 491

Query: 825 DWRAKNAR 832
              + N +
Sbjct: 492 PHSSDNKK 499



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 72/163 (44%), Gaps = 7/163 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            ++ +V    + I + + +  +F+ +  A+  + T+ + +   L F +L     N+     
Sbjct: 852  QQLVVTFFFALIVIFLILAAQFESFKNAIIIMVTVPMSVCGALIFTSLGFTSINIYTQVG 911

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +LTL+G      +++ +      +L     S RD I+++    L   + T+ A  ++++P
Sbjct: 912  LLTLVGLIAKHGILIVEFAN---QLQMDGKSKRDAIEEATAIRLRPILMTTAATVLAMIP 968

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + +    G     +  + +A G+ +    ++F+   + L +  
Sbjct: 969  LLIATGAGAGSRYAMGLVIASGMSIGTLFTLFVVPAMYLLLAK 1011


>gi|182412751|ref|YP_001817817.1| acriflavin resistance protein [Opitutus terrae PB90-1]
 gi|177839965|gb|ACB74217.1| acriflavin resistance protein [Opitutus terrae PB90-1]
          Length = 1033

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 64/524 (12%), Positives = 151/524 (28%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +  IG L          ++ ++P       I                 
Sbjct: 9   RRPVLATVVNLFLLIIGGLAI-----KSMVIRQYPQ-TNNAVIR--------VTTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    +   +                + IT     +    +   ++T  +  
Sbjct: 55  SADLIRGFITTPLEREIASADGLDYVESVSAPNVSIITAKLRLNYDPNDALTQITSKVNR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L VD +  +   +  +  + +    +    +  A + +  + R    ++   E   
Sbjct: 115 ARRELPVDAEDPVFDVSVGESTASMYLTFSSA--VLGANQVTDYLTRVVQPKLSTVEGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++     + +++       N+                G   
Sbjct: 173 KAEIMGARTFAMRIWLDPEKMAAFGLSASQVWAKLSTQNHLSA------------VGKTK 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V ++      +   F          +   E            N+           
Sbjct: 221 GSMVSVNLTAGTDLQSAGEFRQ--------MVIRENKGEIVRLGDIANVVLGAESYDVDV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +    I+    +   + +         +          S + 
Sbjct: 273 KFAGQETTIIAISVLPTANSIDVIKGVRAVWPEVVSQLPAGLDAGIAYDATEFINDSITE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V++  +   +  ++   +I L+++   AL+  LG ++ L ++  +V
Sbjct: 333 VMETLLEAMLIVVLVIYAFLGSFRSVVIPIVAIPLSLVGVCALMLSLGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I+V E I     +  S   +   G       I    IT       +    
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIEEGLSPLDAALKGAHELVGPIIAMTITLAAVYAPIGLQS 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   R FA T+  ++++S F A+++   +   ++R+     
Sbjct: 453 GVTGALFREFAFTLAGAVIVSGFVALTLSPMLSSKLLRHNPNPR 496



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 88/246 (35%), Gaps = 7/246 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + +       V L  + + +   +  D+  +    E   +        +S+   + +  
Sbjct: 242 QMVIRENKGEIVRLGDIANVVLGAESYDVDVKFAGQETTIIAISVLPTANSIDVIKGVRA 301

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGA 696
           V  ++   +P            +   + I + +  ++ + + +++ I      +   +  
Sbjct: 302 VWPEVVSQLPAGLDAGIAYDATEFINDSITEVMETLLEAMLIVVLVIYAFLGSFRSVVIP 361

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           I  + L +          G   NL  + A++  IG  V+D +VV + +    +     +S
Sbjct: 362 IVAIPLSLVGVCALMLSLGFSINLLTLLAMVLAIGLVVDDAIVVVENIH---RHIEEGLS 418

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
             D   K  +E +G  +  ++       P+ +  G        FA  +A  ++V+   ++
Sbjct: 419 PLDAALKGAHELVGPIIAMTITLAAVYAPIGLQSGVTGALFREFAFTLAGAVIVSGFVAL 478

Query: 814 FIAAPI 819
            ++  +
Sbjct: 479 TLSPML 484



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +++ +      +  + L I   + F  L     N+     ++TL+G 
Sbjct: 859  VLAIVVIFLVLAAQYESFRDPFIIMMAVPLSIAGAMVFLFLGVATLNIYTQVGLITLVGL 918

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++ D      KL       R  I+ +    L   + T+ A  + VLP+ V    
Sbjct: 919  ITKHGILMVDFAN---KLQEEGHEVRSAIEHAAGIRLRPILMTTAAMVLGVLPLLVAQGP 975

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G     S  + +A G+ +    ++F+     + +   R
Sbjct: 976  GAEARFSMGLVIAAGMAIGTLFTLFVVPAFYVLVAHRR 1013


>gi|33598463|ref|NP_886106.1| AcrB/AcrD/AcrF family protein [Bordetella parapertussis 12822]
 gi|33603405|ref|NP_890965.1| AcrB/AcrD/AcrF family protein [Bordetella bronchiseptica RB50]
 gi|33574592|emb|CAE39241.1| AcrB/AcrD/AcrF family protein [Bordetella parapertussis]
 gi|33577529|emb|CAE34794.1| AcrB/AcrD/AcrF family protein [Bordetella bronchiseptica RB50]
          Length = 1033

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 59/535 (11%), Positives = 150/535 (28%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATALSMVAILIAGLIA-----YRLLPVSALPEVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PDVMTSLVTSPLERQFGQMPGLNQMSSTSSGGASVITLQFSLDLSLDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D              + VL+   +        +    +  +   ++        
Sbjct: 116 SNLLPNDLPVPPTYNKVNPADAAVLT-LAVTSPTMPLPQVRDLVDTRMAQRLSQIPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     + A +    V  N ++            +      
Sbjct: 175 VSVAGGQRPAVRVQVNPQALASAGLSLADLRTAVVGANVNQPKGNLDGPIRSTTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                      D+                   +    +     
Sbjct: 235 LKSPTD--------------------YNDLIIAYRNDAPLRLSDVARAVQGAEDIRQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   LRA        +V          S +  
Sbjct: 275 VGDKPAILLNVQRQPGANVIDVVDRIHALLPQLRAAMPATLDLVVVADRTQTIRDSVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V F+ +      ++    + L++I T  ++ L G ++   ++  + +
Sbjct: 335 QFEMLLAVGLVVLVTFLFLRSLTATVIPSVVVPLSLIGTFGIMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G ++   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMIENIARHLEEGETPLQAALKGAAQIGFTLISLTFSLIAVLIPLLFMTE 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G   R FA+T+ ++ILIS+  ++++   M   ++R +  +       +   LI
Sbjct: 455 VVGRLFREFAVTLAVAILISLVVSLTLTPMMCARLLRPESEQRHGRFHQATGALI 509



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +     + L +  T G   L G   N   + A+    G+ V+D +V+ + +
Sbjct: 351 LFLRSLTATVIPSVVVPLSLIGTFGIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +      K   +     +  + +    ++P+       G +   FA+ +
Sbjct: 411 ---ARHLEEGETPLQAALKGAAQIGFTLISLTFSLIAVLIPLLFMTEVVGRLFREFAVTL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  I+++   S+ +  
Sbjct: 468 AVAILISLVVSLTLTP 483



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 81/215 (37%), Gaps = 6/215 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  +  + +      + +  +E +     EI     I           +  +   +  +
Sbjct: 804  DQFPMTTVSFNLAPGASLSGAVEAISAVQAEIGLPLAIDTRFQGAALAFQNSLDSTLWLI 863

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + M I + I ++ +   +  ++TL       L    + G + ++  +  ++ LIG 
Sbjct: 864  LAAVVTMYIVLGILYESYIHPITILSTLPSAGVGALLALLISGTDLDMIGIIGIILLIGI 923

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D   +        ++ R+ I ++        + T++AA    LP+ +    
Sbjct: 924  VKKNAIMMIDFALE--AERKRGLAPREAIHEAALLRFRPILMTTLAALFGALPLMLSTGT 981

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            G  +     + M  G++V+   ++F    I L   
Sbjct: 982  GAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLMFD 1016


>gi|310815841|ref|YP_003963805.1| preprotein translocase subunit SecF [Ketogulonicigenium vulgare
           Y25]
 gi|308754576|gb|ADO42505.1| preprotein translocase subunit SecF [Ketogulonicigenium vulgare
           Y25]
          Length = 166

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 60/152 (39%), Positives = 103/152 (67%), Gaps = 1/152 (0%)

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           + Y+W+RF+W F  GA+  L  D   T+G F++F + F+LT VAAVLT++G+S+NDKVVV
Sbjct: 1   MAYVWLRFEWQFGFGAVVGLFTDAMITVGLFSVFQVRFDLTIVAAVLTIVGFSINDKVVV 60

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           +DR+R+ ++   ++    +L+  ++NETL R+V T++   ++++ + +WGG VI  FA  
Sbjct: 61  FDRVREILRR-DSTTPLPELMVVALNETLSRTVMTTVTTILALVALYIWGGDVIRGFAFA 119

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           M FG V+A  S+IF++A ++L++   R    +
Sbjct: 120 MLFGSVIAVYSTIFVSAQVVLWLGVKRDWEKK 151


>gi|223040070|ref|ZP_03610351.1| AcrB protein [Campylobacter rectus RM3267]
 gi|222878656|gb|EEF13756.1| AcrB protein [Campylobacter rectus RM3267]
          Length = 1045

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 163/570 (28%), Gaps = 36/570 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G++           ++ +P   P          +     V    +
Sbjct: 9   RPIFATVVSIIIVIAGMMAI-----KGLPIEEYPKLTPP---------QISVSAVYTGAD 54

Query: 63  DDFVNGFLQMYSDELRSFL-KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + +     I   S       I + F      +     V   +Q 
Sbjct: 55  AQTIADSVASAIEDQINGVENMLYIQSTSSSSGSLNINVYFKIGTSAKQATIDVNNRVQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  + +   +         + +          + +E    +     D++       
Sbjct: 115 ALSRLPQEVQNMGVTVRERSGSILEVIGFTSPN--MNLVEMYNYVNLNIADEVKRVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        +     P  L     T   +     + N+       G +    ++   Y
Sbjct: 173 DTVTIGSKEYSMRIWLKPDILAHYKLTPGDVIAQVKIQNSQYAAGKIGEQPSDGANPYVY 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V     +      G              DI                 +    A      
Sbjct: 233 SVRTDGRLKNAAQFG--------------DIIIKSADGAVLKLKDVAEVELGAASYAADA 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L        +   +   +   T +        L         + +          S   
Sbjct: 279 MLNGKDAIPLLIFMQNDANALATAKAVNAKLDELSKNFPAGFKHTIAYNPTEFIDVSIDE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+IV++M +   +  ++   ++ +++I T   L  +G ++ L ++  ++
Sbjct: 339 VVKTFIEAMILVIIVMYMFLKSIRATIIPMLAVPVSIIGTFGGLYAMGFSINLITLFALI 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ VD  I+V E +     +++  +V  +         + +    +      V + F
Sbjct: 399 LAIGIVVDDAIIVIENVERILHEDKTVTVKEATYKAMEEVQTPVISIVLVLSAVFVPVAF 458

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R FA+T+  S+ IS F A+++  A+   +++ ++ +   I      F    
Sbjct: 459 MEGFVGVIQRQFALTLVTSVCISGFVALTLTPALCGVMLKRQESEPFWIVRKFNDFFDWS 518

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFT 566
                   A+     I  L  I  +     
Sbjct: 519 TKIFTAGVAKVLRHVIISLILIGVMGYATF 548



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/241 (10%), Positives = 81/241 (33%), Gaps = 7/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V                   +   L+       +++A  + +     ++++  P     
Sbjct: 263 DVAEVELGAASYAADAMLNGKDAIPLLIFMQNDANALATAKAVNAKLDELSKNFPAGFKH 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFF 711
                  +     I + +   I + I ++I +          +  +  + + I  T G  
Sbjct: 323 TIAYNPTEFIDVSIDEVVKTFIEAMILVIIVMYMFLKSIRATIIPMLAVPVSIIGTFGGL 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   NL  + A++  IG  V+D ++V + + + +     +++ ++   K++ E    
Sbjct: 383 YAMGFSINLITLFALILAIGIVVDDAIIVIENV-ERILHEDKTVTVKEATYKAMEEVQTP 441

Query: 772 SVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            V + +    +V     +    +      FA+ +   + ++   ++ +   +   +   +
Sbjct: 442 -VISIVLVLSAVFVPVAFMEGFVGVIQRQFALTLVTSVCISGFVALTLTPALCGVMLKRQ 500

Query: 828 A 828
            
Sbjct: 501 E 501



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 70/201 (34%), Gaps = 7/201 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
              ++ +++ + + +       +              G    I   I + + +  ++ +W 
Sbjct: 833  DAIKAIQEVVEQTLNTEEYAISWAGTAYQEVSSQGTGTTAFIFGMIFVFLILAAQYERWL 892

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  IT +   +  +L      G+  ++     +L LIG S  + +++ +     M+  
Sbjct: 893  IPLAVITAVPFAVFGSLAAVWARGLTNDIYFQIGLLLLIGLSAKNAILIVEFA---MQER 949

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                S  D    +        V TS+A  + V PM +    G +   S    +  G++ A
Sbjct: 950  LAGKSVFDAAVNAARLRFRPIVMTSLAFTLGVFPMVISTGAGAASRHSLGTGVIGGMIAA 1009

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
             + +IF        +     K
Sbjct: 1010 TTIAIFFIPMFYYLLEKLNNK 1030


>gi|83645034|ref|YP_433469.1| cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
 gi|83633077|gb|ABC29044.1| Cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
          Length = 1022

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 71/623 (11%), Positives = 173/623 (27%), Gaps = 39/623 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GL     N L    + ++P  +    I+                
Sbjct: 9   RRPVLASVVSLIILLLGL-----NALKTLQVRQYPQ-LENAVIN--------ISTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+GF+     +  +  +       S  Q  + + +             ++   +  
Sbjct: 55  SSELVSGFITSPIQQAVASAEGIDYLTSSSNQGSSLVEVHLKLGFDSSTAMTEILSKVAE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++ ++  +T    +++        +     + +  + R    Q+  ++   
Sbjct: 115 ARRQLPSDAEEPVIQKSTTGSTALMYVSFFSRDMSEA--QITDYLKRVVQPQLETADGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +P +L     T   ++      +                     
Sbjct: 173 KAEILGGKTFAMRVWLNPQKLAAFDLTPQDVARAVGSNSFLSAAG--------------- 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  I+         +   +  + VV        A          I           
Sbjct: 218 -ATKGQYITANITADTDLHSVQEFQQLVV----KRDDATLVRLQDVATIELDAESDDSAV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +    I+    L   L           V          S + 
Sbjct: 273 YFNGNRAVFMAITSLPAANPLEVIDNIYDLMPALEKQLPSALNVKVAYDATKFIRDSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V+ V+F+ +   +  ++   +I L++I     +  LG ++ L ++  +V
Sbjct: 333 VIKTVGEATVIVIFVIFLFLGSFRAVMIPVVTIPLSLIGVCFFMLALGYSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL---F 478
           L IGL VD  I+V E I     +  S F +  +G     + +    +T       +    
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIDEGLSPFKAAIIGAREIATPVISMTLTLAAVYAPIGFLG 452

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  + FA  +  +++IS   A+++   M   ++     K           L     
Sbjct: 453 GLTGGLFKEFAFALAGAVIISGVIALTLSPMMCSKLMTETNSKMAIWLDEVFEKLTGAYQ 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                   +  V + ++ ++   C       N  +       +    +     +      
Sbjct: 513 RRLHNALNYRPVTLVMVLTMLVSCFFLYQLSNKELARDEDQGIIFSMSTAPVSATHDYVA 572

Query: 599 ESLQIGDISFQNFDGEKNFLVRL 621
                   + + FD   ++ +  
Sbjct: 573 AYTDEVIKTIETFDERNDYFIVQ 595



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 101/307 (32%), Gaps = 11/307 (3%)

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
           +  +   + +    L+   +     +  F+ A     G  I  +I +   L +      +
Sbjct: 184 MRVWLNPQKLAAFDLTPQDVARAVGSNSFLSAAGATKGQYITANITADTDLHSVQEFQQL 243

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
             K      V       + +   + +S    + +   F    +       +  D+     
Sbjct: 244 VVKRDDATLVRLQDVATIELDAESDDSAVYFNGNRAVFMAITSLPAANPLEVIDN--IYD 301

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           ++  ++K++   + +    +          E+I+      +I    + +++     +   
Sbjct: 302 LMPALEKQLPSALNVKVAYDATKFIRDSINEVIKTVGEATVIVIFVIFLFLG---SFRAV 358

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  + T+ L +     F    G   NL  + A++  IG  V+D +VV + +    +    
Sbjct: 359 MIPVVTIPLSLIGVCFFMLALGYSINLLTLLAMVLAIGLVVDDAIVVVENIH---RHIDE 415

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAAS 810
            +S          E     +  ++       P+       G +   FA  +A  ++++  
Sbjct: 416 GLSPFKAAIIGAREIATPVISMTLTLAAVYAPIGFLGGLTGGLFKEFAFALAGAVIISGV 475

Query: 811 SSIFIAA 817
            ++ ++ 
Sbjct: 476 IALTLSP 482



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/282 (9%), Positives = 86/282 (30%), Gaps = 13/282 (4%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            +    S+      +            +      +   +   + LS +    + ++     
Sbjct: 730  YTTRFSVEGRSYKVIPQVLREYRATAEQLDDYYVRTASGELIPLSTIAEVSKGVEPNKRG 789

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                         +        A + + +  +    +         +     + S  +  
Sbjct: 790  QFQQLNAMVVEGVMTPGISLGEALSFLEQKAQTIFPQGYGYEYAGQSRQYKQEGSALIFT 849

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIE-FNLTAVAA 725
                    + + + + +  +F+ +      + ++ + +   L     FG+   N+     
Sbjct: 850  -----FFFALLMIYLVLAAQFESFRDPFIILVSVPMSLLGAL-IPIAFGVTSVNIYTQIG 903

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++TLIG      +++ +    N       +S R+ I+++    L   + T+ A  +   P
Sbjct: 904  LVTLIGLITKHGILIVE--FANQLQVEQGLSKREAIEQAAGIRLRAILMTTAAMVVGEAP 961

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +      G        + +A G+ +    ++F+   + + + 
Sbjct: 962  LLFASGAGAVSRFDIGLVIASGLSIGTLFTLFVVPTMYMILG 1003


>gi|30063521|ref|NP_837692.1| multidrug efflux system subunit MdtC [Shigella flexneri 2a str.
           2457T]
 gi|30041774|gb|AAP17501.1| hypothetical protein S2266 [Shigella flexneri 2a str. 2457T]
 gi|281601523|gb|ADA74507.1| Multidrug resistance protein mdtC [Shigella flexneri 2002017]
 gi|313649877|gb|EFS14297.1| multidrug resistance protein mdtC [Shigella flexneri 2a str. 2457T]
 gi|332755910|gb|EGJ86264.1| multidrug resistance protein mdtC [Shigella flexneri K-671]
 gi|332756896|gb|EGJ87241.1| multidrug resistance protein mdtC [Shigella flexneri 2747-71]
 gi|333002447|gb|EGK22009.1| multidrug resistance protein mdtC [Shigella flexneri K-218]
 gi|333017123|gb|EGK36444.1| multidrug resistance protein mdtC [Shigella flexneri K-304]
          Length = 1021

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 69/603 (11%), Positives = 159/603 (26%), Gaps = 40/603 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +     P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLTPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K +           L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG--VLANRPVDLSVVRSN 597
                         +   +     L           +    L   + A++ +    +R  
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGK 574

Query: 598 LES 600
           L+ 
Sbjct: 575 LQD 577



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 799  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 858

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 859  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 918

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 919  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 976

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 977  PLEITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1013


>gi|226953020|ref|ZP_03823484.1| acriflavin resistance protein [Acinetobacter sp. ATCC 27244]
 gi|226836227|gb|EEH68610.1| acriflavin resistance protein [Acinetobacter sp. ATCC 27244]
          Length = 1046

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 73/523 (13%), Positives = 153/523 (29%), Gaps = 40/523 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ M+   GLL           + +FP                     L   
Sbjct: 9   RNPIPSILLFIMLGLAGLL-----CFHWMKIQQFPDIELPMVT---------VTAALPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + L+       +++     +T  F   +  +   D V   +  
Sbjct: 55  APPQLETEVARKIENSIATLQGLRNQYTNIQDGVVSVTAEFQLEKPLQEAVDDVRNAVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D +  ++         I+       ++   A   S  +       +   +   
Sbjct: 115 VRSDLPADLRDPIVSKINLSGSPILTYTIQSPKMDEEA--LSWFVDYDISRAMLQVKGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  Q+  E DP +L  L  T   +S    L      G    +     S     
Sbjct: 173 AVSRVGGVTRQVEVELDPEKLLALNATATDISHQLRLLQQDASGGQTKIGGSEQSIRTIA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   EI  + +                         R         I   +A      
Sbjct: 233 TVQTAAEIGAMDIAL--------------------SDGRHIRLDQVATIHDGIAERRSAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +     +     S     +   +    L+A              V     +   
Sbjct: 273 LLNGKPVIGFEITRSKGASEVDVEKGVILALDKLKASHP-DLEITEAFNFVQPVEENYKG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +  ++A  ++ L+++  +  +  LG TL + ++  + 
Sbjct: 332 SMALLYEGALLAVLVVWLFLRDWRATIIAATALPLSILPAMIGMYYLGFTLNIVTLLAMS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +G+ VD  I+  E I    R  ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIIRHLRMGKTPYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G     F  T  L+I  S+  A  +   M  +I++    K
Sbjct: 452 GIAGKFFVQFGWTASLAIFASLLVARLLTPMMAAYILKPWVGK 494



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 75/244 (30%), Gaps = 6/244 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + + +   R + L  V +  + +     +              + +    V   + + 
Sbjct: 241 GAMDIALSDGRHIRLDQVATIHDGIAERRSAALLNGKPVIGFEITRSKGASEVDVEKGVI 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
           +   K+    P   I         +         +    + +A+L+       W   + A
Sbjct: 301 LALDKLKASHPDLEITEAFNFVQPVEENYKGSMALLYEGALLAVLVVWLFLRDWRATIIA 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L I   +      G   N+  + A+  ++G  V+D +V  + +   ++      +
Sbjct: 361 ATALPLSILPAMIGMYYLGFTLNIVTLLAMSLVVGILVDDAIVEIENI---IRHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSI 813
             +   ++ +E     + T+       LP A   G        F    +  I  +   + 
Sbjct: 418 PYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFVQFGWTASLAIFASLLVAR 477

Query: 814 FIAA 817
            +  
Sbjct: 478 LLTP 481



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 83/220 (37%), Gaps = 8/220 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        ++     +   V +  T      ++  T I   ++ +EL     + ++
Sbjct: 815  NRMRNINLNIELNNQPLGDIAAQVDQLPTMQNLPPSVTRTNIGDAEVMQELFSSFGLAML 874

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               + + + + + FK +   +  +  L L +        L    F++ ++  ++ L+G +
Sbjct: 875  TGVLCIYVVLVLLFKDFLQPITILVALPLSLGGAFVLLLLAKSSFSMPSLIGLIMLMGIA 934

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ D     +       S  + +  + ++     + T++A    +LP+A  G   
Sbjct: 935  SKNSILLVD--YAIIARNEKGYSRFNALLDACHKRARPIIMTTLAMGAGMLPIA-LGVGT 991

Query: 794  IGSF----AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              SF    AI +  G++ +   S+ +   +  FI D   K
Sbjct: 992  DPSFRSPMAISVIGGLITSTFLSLLVIPVVYTFIDDIHQK 1031


>gi|77456935|ref|YP_346440.1| acriflavin resistance protein [Pseudomonas fluorescens Pf0-1]
 gi|77380938|gb|ABA72451.1| integral membrane component of multidrug efflux system [Pseudomonas
           fluorescens Pf0-1]
          Length = 1025

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 63/521 (12%), Positives = 153/521 (29%), Gaps = 47/521 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V++ ++I   G+   +        + ++P                   + +  
Sbjct: 8   LRRPVLAVVVSTLILLFGVRALM-----NLPIRQYPMLETST-------------ITVTT 49

Query: 61  DEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                 +  +         +  + ++       +  Q ++++T+  A +        +V 
Sbjct: 50  QYPGASSELMQGFVTQPISQAVASVEGIDYLSSASTQGRSQVTIRMALNSDSIAALTEVM 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  +  +L  D    ++  T+    S+         +     E S  I R        
Sbjct: 110 AKVNQIKYRLPKDAYDPVVERTSGGFTSVAYVAFASSNLT--IPEMSDYISRVVEPMFAG 167

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +        + +    DP RL     T   +S      N           ++  +
Sbjct: 168 IEGVAKINIMGEQKLSMRLWLDPQRLAGYGMTGQDVSAAIEGNNFQAAPGQVKGLYVVSN 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +    +                      D+                 +    A 
Sbjct: 228 LRVNTDLNSVEDF--------------------RDMVLRNDNGHIIRVRDVGTVELNAAS 267

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 ++               +    ++    L   ++    P     +         
Sbjct: 268 TDTSGAMSDVPALFLGLDAAPTGNPLVIVKRVRELLPQIQETLPPGVTVQIPFEVAHFIQ 327

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      +V++V+++ +   +  L+   +I L+++    L+ + G +L L +
Sbjct: 328 SSIDEVSYTLLEALVIVVLVIYLCLGTFRTVLIPLVTIPLSMLGAAMLMQMFGFSLNLLT 387

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  +VL IGL VD  I+V E +     + +S F +  +G       +     T       
Sbjct: 388 LLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPFEAALIGAREVAGPVVAMTFTLAAVYAP 447

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           +   G   G   + FA+T+  +++IS   A+++   M   +
Sbjct: 448 IGLMGGLTGTLFKEFALTLAGAVVISGIVALTLSPIMSTRL 488



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 41/257 (15%), Positives = 92/257 (35%), Gaps = 16/257 (6%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             +  +    G  + V     V+L+   ++         +             L      
Sbjct: 240 FRDMVLRNDNGHIIRVRDVGTVELNAASTDTSGAMSDVPALFLGLDAAPTGNPLVIVKRV 299

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI- 686
                ++ E +   +T  +P       +    ++S  L+   ++ V++      IY+ + 
Sbjct: 300 RELLPQIQETLPPGVTVQIPFEVAHFIQSSIDEVSYTLLEALVIVVLV------IYLCLG 353

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            F+    L  + T+ L +        +FG   NL  + A++  IG  V+D +VV + +  
Sbjct: 354 TFRTV--LIPLVTIPLSMLGAAMLMQMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENVH- 410

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
             +      S  +       E  G  V  +        P+ + G   G++   FA+ +A 
Sbjct: 411 --RHIEEGKSPFEAALIGAREVAGPVVAMTFTLAAVYAPIGLMGGLTGTLFKEFALTLAG 468

Query: 804 GIVVAASSSIFIAAPIL 820
            +V++   ++   +PI+
Sbjct: 469 AVVISGIVAL-TLSPIM 484



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/194 (10%), Positives = 61/194 (31%), Gaps = 8/194 (4%)

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAIT 698
            + +         +        + +     +        ++IY+ +      +      + 
Sbjct: 818  LQKQSEGFPAGFSFDWQSDARQYVQEGNSLAFTFGLALVIIYLVLSVQYESFRDPFIILI 877

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            ++ L I   L   AL     N+     ++TLIG      +++     +  +     +   
Sbjct: 878  SVPLSICGALVPLALGMTSMNIYTQIGLITLIGLISKHGILMVAFANELQRQ--QGMDRV 935

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
              I  +    L   + T+ A  + + P+      G +      + +  G+++    ++FI
Sbjct: 936  QAIQHAAQVRLRPILMTTAAMVVGLAPLLFASGAGANSRFGLGLVIVVGMLIGTLFTLFI 995

Query: 816  AAPILLFIYDWRAK 829
               +   +   +  
Sbjct: 996  LPSVYTLLSSIKQP 1009


>gi|170781151|ref|YP_001709483.1| preprotein translocase subunit SecD [Clavibacter michiganensis
           subsp. sepedonicus]
 gi|169155719|emb|CAQ00840.1| protein-export membrane protein SecD [Clavibacter michiganensis
           subsp. sepedonicus]
          Length = 603

 Score =  150 bits (379), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 118/530 (22%), Positives = 210/530 (39%), Gaps = 37/530 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF---- 65
           L  ++  IG+L         S+     S  P     L LDL GG+ ++L    D      
Sbjct: 15  LIWLLVIIGILA---GGNAASVAFSNGSWTP----KLALDLEGGTQIILAPQLDGASSGP 67

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            +  L      +R  +   G+    +     + I +S                 +Q + S
Sbjct: 68  TSEQLAQAVSIIRQRVDASGVSEAEITTQGGSNIVVSLPGEPDA--------ATMQRLQS 119

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
              ++ +  L+       ++   +  +                           ST+   
Sbjct: 120 SAKLELRPVLIGAAGTASVAPTPTPTDGSAPADGTTPTDGSTPAAEAPAATPDPSTLSDE 179

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
            +              RL+         +  +     +              DG    V 
Sbjct: 180 PTAEPTGPSDVSWVTPRLQAEFAAYDCATAPESDGQAAPADR---AIIACSDDGAAKYVL 236

Query: 245 DKVEISGIHLNGATANFDPKTHK-----PVVDISFDEMGARRFFEV-----TRDNIGKPL 294
             VE+ G  ++ AT+     +         V++ FD  G ++F ++     T ++     
Sbjct: 237 GPVEVDGSTISDATSGLQQSSQGVSTGTWSVNLVFDGDGTKQFGDMSTRLITLESPRNQF 296

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A VLD  V++APV    + +GK  I+GNFT E+A  LA  L+ G+LP+   +     + A
Sbjct: 297 AFVLDNEVISAPVTQGVVTNGKPSITGNFTQESAKALADQLKFGALPLSFTLQSSDVISA 356

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL-- 412
            LGS  +  G  A + GLVL+VL+ +V Y   G+V   S+ +  ++T  L++LL      
Sbjct: 357 TLGSSQLTSGLIAGLIGLVLVVLYSLVQYRALGMVTIASLVIAAVITYLLITLLSWREGY 416

Query: 413 --TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
             +L  +AG+++ IG+  DS I+  ERI++E R  + +  S++ G+ RA  TI  S+   
Sbjct: 417 RLSLAGVAGLIVAIGITADSFIVYFERIKDELRDGRGLVSSVEQGWKRALRTIIASDTVN 476

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            +A  VLF    G V+GFA+T+GL+ +I +         ++  +   +  
Sbjct: 477 FLAAAVLFILAVGNVKGFALTLGLTTIIDLIVVSLFTHPILQLLANRRFF 526



 Score = 89.0 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 103/284 (36%), Gaps = 9/284 (3%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                S L          T  +N   D  G  Q G ++ R + L   R+    +   ++ 
Sbjct: 246 ISDATSGLQQSSQGVSTGTWSVNLVFDGDGTKQFGDMSTRLITLESPRNQFAFVLDNEVI 305

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                 +           G+   ++      + K   +    T+Q+++++   +    + 
Sbjct: 306 SAPV-TQGVVTNGKPSITGNFTQESAKALADQLKFGALPLSFTLQSSDVISATLGSSQLT 364

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAV 723
            G++  +I  + +++Y  ++++    +  I +L++    T     L     G   +L  V
Sbjct: 365 SGLIAGLIGLVLVVLYSLVQYR-ALGMVTIASLVIAAVITYLLITLLSWREGYRLSLAGV 423

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A ++  IG + +  +V ++R++  ++           +++     L   + +    F++ 
Sbjct: 424 AGLIVAIGITADSFIVYFERIKDELRD---GRGLVSSVEQGWKRALRTIIASDTVNFLAA 480

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + +     +  FA+ +    ++          PIL  + + R
Sbjct: 481 AVLFILAVGNVKGFALTLGLTTIIDLIVVSLFTHPILQLLANRR 524


>gi|325279290|ref|YP_004251832.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Odoribacter splanchnicus DSM 20712]
 gi|324311099|gb|ADY31652.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Odoribacter splanchnicus DSM 20712]
          Length = 1057

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 80/668 (11%), Positives = 174/668 (26%), Gaps = 56/668 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G+L      L    + ++P   P               +      
Sbjct: 9   RPVLSTVISIVVVILGIL-----GLVSLPVSQYPDIAPPT-----------IRVTTTYTG 52

Query: 63  DDFVNGFLQMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTLF 118
            +     L      L   +   E +   S       +  I + F      +  A  V   
Sbjct: 53  ANA-QTILNSVIAPLEEQINGVEDMMYMSSTATNTGEASIEVYFKQGTDPDMAAVNVQNR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +      L  +  +  ++T   +   ++                   +    I +I   +
Sbjct: 112 VAKAQGFLPAEVTQVGVITQKRQSSMLLGFSFYSSDDKYDNEFLENYMNINIIPEIKRIQ 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                +        +     P  + Q     + +S      N       FG    R +  
Sbjct: 172 GVGDAMVMGT-DYSMRIWLKPDVMAQYKLMPSDVSVALAEQNIEAAPGQFGE---RGNQS 227

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            QY+++ K  +                 +    +                 +        
Sbjct: 228 FQYVMKYKGRL-------------QTQEEFENIVIRATSDGEILRLKDIATVELGRLTYG 274

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +       AI    A  +    I+        +     P    +           S
Sbjct: 275 FQNNVNGHPGVTAIIFQTAGSNATTIIQDIQEYLKKVEPTLPPGVKVVELLNANDFLFAS 334

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T      LV +V+++ +   +  L+   +I + +I T   L L+G ++ L ++ 
Sbjct: 335 IHEVLKTLLEAFVLVFLVVYIFLQDFRSTLIPAIAIPVALIGTFFGLYLIGFSVNLLTLC 394

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIAT 474
            +VL I + VD  I+V E +  +  +   S   +     S    A  +I    ++  I  
Sbjct: 395 AMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARLASIDAMSELGGAIVSITLVMMSVFIPV 454

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK------------S 522
             +    G   R F +TM ++I +S   A+++  A+    +                   
Sbjct: 455 SFMTGTSGTFYRQFGLTMAIAIGLSAINALTLSPALCAIFLHPHDKNGEKKKTSLIERFH 514

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFW--GVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           I  N      L      I F   R +     +     +    +  T       +  G I 
Sbjct: 515 IAFNAAYDVTLKKYERGITFFIRRKFLSFAIVIATIVVMIFLMNITPTGLVPNEDTGTIF 574

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
             V            + +E +     +                    +   T ++++   
Sbjct: 575 AVVDMAPGTAQERTEAVMEQVDSLVAANPAVKSRTQVTGYSFLAGQGNSYGTLIIKLKDW 634

Query: 641 KITEIVPL 648
           K       
Sbjct: 635 KERGKGED 642



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/405 (11%), Positives = 120/405 (29%), Gaps = 22/405 (5%)

Query: 445  NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
             +     +   + +A S I D+ +      ++    G     GF   +       + T  
Sbjct: 640  GEDANTVIGTLYMQAQSLIKDARVLLFAPPMI---PGYSVTNGFEFNLQDKTGGDLNTFY 696

Query: 505  SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
             + +  +  +    ++ +   +    F      I     +         +         +
Sbjct: 697  EVAQEFLGKLKERPEIATAQTSFNPTFPQYMIDIDAAKCKQAGISPNDILTTLQGYYGGI 756

Query: 565  FTHGLN-----YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
            +    N     Y +  +   +  +      ++ +   N  +     ++     G  N   
Sbjct: 757  YASNFNRFGKLYRVMIQADPRYRINPESLQNVKIRNGNEMAPISQFMTLTKVYGPDNIKR 816

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPL-----STIQNTEIVGPKISRELIRKGIVGVI 674
               +                + I  I  +      T    E  G     +        +I
Sbjct: 817  FNMFTSMSVNGSPADGYSSGQAIKAIEEVAAQSLPTGYGFEFSGMTREEQSSSGSTTAMI 876

Query: 675  ISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             +   + +Y+ +      +   L  + ++   +  +  F  + G+E N+    A++ LIG
Sbjct: 877  FALCFVFVYLLLSAQYESYILPLVVLLSVPSGLMGSFIFAQIMGVENNIYMQIALIMLIG 936

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ +     +    T +S  +      +  L   + TS+A  I +LP+     
Sbjct: 937  LLAKNAILITEFA---LDRRKTGMSITEAAVSGASARLRPILMTSLAMVIGLLPLMFAHG 993

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G +   +       G+ +     IFI   + +     + K   +
Sbjct: 994  VGANGNSTLGTGAIGGMFIGMICQIFIVPALFVVFEHIQEKVKPL 1038



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 42/419 (10%), Positives = 123/419 (29%), Gaps = 25/419 (5%)

Query: 437 RIREENRKNQSVFCSLDMGFSRAYST-------------IFDSNITALIATVVLFFFGGG 483
            I    ++      +     +R                 I     ++++     +     
Sbjct: 90  SIEVYFKQGTDPDMAAVNVQNRVAKAQGFLPAEVTQVGVITQKRQSSMLLGFSFYSSDDK 149

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
               F        +I     I  V   M+    Y     +  + ++++ L+P  +++   
Sbjct: 150 YDNEFLENYMNINIIPEIKRIQGVGDAMVMGTDYSMRIWLKPDVMAQYKLMPSDVSVALA 209

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL---SVVRSNLES 600
                                           +    + + A    ++     + +    
Sbjct: 210 EQNIEAAPGQFGERGNQSFQYVMKYKGRLQTQEEFENIVIRATSDGEILRLKDIATVELG 269

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                             +  Q    ++    + ++   KK+   +P        +    
Sbjct: 270 RLTYGFQNNVNGHPGVTAIIFQTAGSNATTIIQDIQEYLKKVEPTLPPGVKVVELLNAND 329

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFN 719
                I + +  ++ + + + + ++I    +   L     + + +  T     L G   N
Sbjct: 330 FLFASIHEVLKTLLEAFVLVFLVVYIFLQDFRSTLIPAIAIPVALIGTFFGLYLIGFSVN 389

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  + A++  I   V+D +VV + +   +     S     +   +++E  G  V  ++  
Sbjct: 390 LLTLCAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARLASI--DAMSELGGAIVSITLVM 447

Query: 780 FISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI---YDWRAKNAR 832
               +P++   G+       F + MA  I ++A +++ ++  +       +D   +  +
Sbjct: 448 MSVFIPVSFMTGTSGTFYRQFGLTMAIAIGLSAINALTLSPALCAIFLHPHDKNGEKKK 506


>gi|28869941|ref|NP_792560.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28853186|gb|AAO56255.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 1035

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/589 (11%), Positives = 165/589 (28%), Gaps = 44/589 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I  +G +           +   P+      +             L   
Sbjct: 9   RRPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q   +I L F  +R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSLGSIAGVNTMTSNSSQGSTRIILQFDLNRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q   +   +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAITNANVRRPKGFVEDDQHNWQVQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 +   +    +  
Sbjct: 234 QLESAKD--------------------YAPLIIRYQDGATLRLKDVAKVSDAVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         LRA         +          +   
Sbjct: 274 FYNNDRAVLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSRFF 532
           G      R F+IT+ +SI++S+  ++++   +    ++          +        R  
Sbjct: 454 GLVESLFREFSITLSVSIVVSLIVSLTLTPMLCARWLKPHVAEKDNAFQRWSERVNDRMV 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              D      +R R   V   ++  I ++ L       +      G  +
Sbjct: 514 AAYDRSLGWVLRHRRLTVLSLLVTVIVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 97/262 (37%), Gaps = 9/262 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  QDPVTLEQVQLITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   S I +             +     ++ S +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPSDIISKMAGTANAFASTQKGQPWMILGSLLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGLVKKNAIMMID--LALHLEREQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++  + I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPEESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    + L++   R +  +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHRFNK 1021


>gi|270156982|ref|ZP_06185639.1| multidrug resistance protein MdtC [Legionella longbeachae D-4968]
 gi|289164600|ref|YP_003454738.1| multidrug efflux system, subunit C [Legionella longbeachae NSW150]
 gi|269989007|gb|EEZ95261.1| multidrug resistance protein MdtC [Legionella longbeachae D-4968]
 gi|288857773|emb|CBJ11617.1| multidrug efflux system, subunit C [Legionella longbeachae NSW150]
          Length = 1032

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 71/666 (10%), Positives = 179/666 (26%), Gaps = 36/666 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  +GL  A         +   P                     L     + +   
Sbjct: 12  IATILLALGLSFAGILAFDLLPVAPLPQIDFPTIT---------VQAQLPGGSPEIMATS 62

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +     +        S    Q  I + F  SR  +  A  +   +    S+L  +
Sbjct: 63  VAAPLERQIGRIAGISQLTSSSTLGQTSIIVQFDLSRNIDGAARDIQAAINAAMSQLPTN 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
              N          + ++    +        +           +I   E   Q       
Sbjct: 123 LTNNPTYRKVNPADAPIMI-LALTSDKFTPGQLYDVASTLLQQKILRIEGVGQVNVGGSS 181

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           L  +  E +P+ L +      ++                              +     +
Sbjct: 182 LPAVRIEINPTALNKYGIGLGQLGTIIAN--------------------ANVNLAKGQLV 221

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
               ++   +N           +                ++   +A V    +       
Sbjct: 222 HDHTVSVIKSNDQMLKASEYAPLIISFFNNEPVRLSDVAHVYDSVADVHTAGLANGKPAV 281

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +   +   +   T++    +   + A         +          S    + T  I 
Sbjct: 282 LLVLFKQPGANVIKTVDRVREILPQIEASMPKNIQLNILMDRTSTIRTSLHDVELTLLIS 341

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV+ V ++ +   +  +V   ++ L+++ T A++ LL  +L   S+  + +  G  VD
Sbjct: 342 MCLVIFVTYLFLGSFRAMMVPGIAVPLSLLGTFAVMKLLNYSLDNLSLMALTISTGFVVD 401

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVR 486
             ++V E I       +  F +   G      T+   +I+ +   + +   G   G   R
Sbjct: 402 DAVVVLENISRHIALGKKPFQAAFDGSREIGFTVLSISISLIAVFIPILLMGGIVGRLFR 461

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYK---KMKSIDINPLSRFFLIPDCIAIQFM 543
            F +T+ ++ILIS+  ++++   M   ++      +                + +     
Sbjct: 462 EFVVTLSIAILISLVISLTLTPMMCSRMLHENEGEQSNFFMRFTERVRLRYANGLHWALF 521

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             RF  V +     +     +      +       I   + A++ +    +R  L     
Sbjct: 522 HPRFMLVLMFATIILTVYLFIIIPKGFFPQQNTDRIAGTLRADQDISFQAMRKKLNQFVS 581

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                        F+         +     ++   +K  +        +  + +      
Sbjct: 582 KISEDTAVANVAAFIGSGPGNNTTNTGTVFIMLKPQKSDSPTSEQVVSRLRKELSSITGA 641

Query: 664 ELIRKG 669
            L  + 
Sbjct: 642 TLYMQS 647



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 81/241 (33%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +    N PV LS V    +S+     +          LV  +    + +     +  +  
Sbjct: 246 ISFFNNEPVRLSDVAHVYDSVADVHTAGLANGKPAVLLVLFKQPGANVIKTVDRVREILP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA-IAMLIYIWIRFKWYFALGAITT 699
           +I   +P +   N  +      R  +    + ++IS  + + +       +   +     
Sbjct: 306 QIEASMPKNIQLNILMDRTSTIRTSLHDVELTLLISMCLVIFVTYLFLGSFRAMMVPGIA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + L +  T     L     +  ++ A+    G+ V+D VVV + +    +          
Sbjct: 366 VPLSLLGTFAVMKLLNYSLDNLSLMALTISTGFVVDDAVVVLENI---SRHIALGKKPFQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
                  E     +  S++     +P+ + GG V      F + ++  I+++   S+ + 
Sbjct: 423 AAFDGSREIGFTVLSISISLIAVFIPILLMGGIVGRLFREFVVTLSIAILISLVISLTLT 482

Query: 817 A 817
            
Sbjct: 483 P 483



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 71/199 (35%), Gaps = 11/199 (5%)

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               T ++  +    T                   + LI   I+ V I          +  
Sbjct: 820  NKITAMVNKLNLPPTMRGAFQGTAQAFQESFANEKYLILTAILAVYIVLG------MLYE 873

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 +  ++TL       L    LF  + ++ A+  ++ LIG    + +++ D   +  
Sbjct: 874  SLVHPITILSTLPSAGVGALLALLLFKSDLSIIALIGMILLIGIVKKNAIMMIDFALEAE 933

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +L     S RD I ++        + T+MAA +  +P+ +    G  +     I +  G+
Sbjct: 934  RLENK--SPRDAIYEAALLRFRPIMMTTMAAILGAMPLIIGFGVGSELRRPLGIAIVGGL 991

Query: 806  VVAASSSIFIAAPILLFIY 824
            +++   +++    I L + 
Sbjct: 992  IMSQLLTLYTTPVIYLTLD 1010


>gi|261213212|ref|ZP_05927495.1| RND multidrug efflux transporter [Vibrio sp. RC341]
 gi|260837630|gb|EEX64324.1| RND multidrug efflux transporter [Vibrio sp. RC341]
          Length = 1036

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 73/568 (12%), Positives = 171/568 (30%), Gaps = 39/568 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAIF-----KMQVREYPEMTNTVIT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      +++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKESEDPTVTMSTGSTTAVLYIGFTSEELASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  + A +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+  + +     N         V ++      R         +           
Sbjct: 233 QVSTVEELENLVVKAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVV----------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 282 ---------AAINAAPSANPINIAKDVLDMLPELQKNMPSNIKMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA+T+  S+ +S   A+++   M   +++  +  +     +          
Sbjct: 453 GITGALFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTAR 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFT 566
             + + A      + I F+      L  
Sbjct: 513 YERMLGAVMAHRPVVIAFAFIVFASLPM 540



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L  +     +             E            + +   + +  +  ++ + +
Sbjct: 251 NVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLDMLPELQKNM 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + I  ++ +A+ +L+ I +        L  I T+ L + 
Sbjct: 311 PSNIKMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  + G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   G++   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAIPVIAMTLTLGAVYAPIALMGGITGALFKEFALTLAGSVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +        +
Sbjct: 488 MLKANEAPNK 497



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 81/791 (10%), Positives = 212/791 (26%), Gaps = 36/791 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                     +EL + +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 229  SADTQVSTVEELENLV--VKAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 286

Query: 126  LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                   N+     +    +   + S   ++ +    +  +    E+I+  ++   I   
Sbjct: 287  APSANPINIAKDVLDMLPELQKNMPSNIKMNVLYDSTVAINESIHEVIKTIVEAALIVLV 346

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 347  VITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 404

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 D+    G     A      +   PV+ ++           +     G        
Sbjct: 405  VLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGALFKEFAL 464

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                +  V      +    +               L+   L  ++    ER +GA +   
Sbjct: 465  TLAGSVFVSGIIALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLGAVMAHR 524

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
             +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 525  PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVVMLMGTGPSNANLDYLANTMDDVNKIL 584

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                 +            N+     +    S   +     +    T+        +    
Sbjct: 585  SDQPEVQFAQVFTGVPSSNQAFGIASMVPWSQREASQADVTNRVGTLVKEIPGMAVTA-- 642

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             F        G  + +   I            A  I          +  +    F     
Sbjct: 643  -FQMPELPGAGSGLPIQFVITTPNSFESLFTIATDILTEVKSSPMFVYSDLDLNFDSATM 701

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
             I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 702  KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPQSMN 761

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
            +       G++         + +   +  P  +   +  +  V    T +          
Sbjct: 762  NYYVRAADGNVIPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPSPGTAMGDAINWFENL 821

Query: 652  --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     N + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 822  ASSKLPKGYNHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   A      N+ +   ++TL+G      +++ +  ++        +S  D +
Sbjct: 882  LAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
              +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 940  MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 999

Query: 819  ILLFIYDWRAK 829
            I  ++ +    
Sbjct: 1000 IYSYLAEKHKP 1010


>gi|183600497|ref|ZP_02961990.1| hypothetical protein PROSTU_04076 [Providencia stuartii ATCC 25827]
 gi|188019984|gb|EDU58024.1| hypothetical protein PROSTU_04076 [Providencia stuartii ATCC 25827]
          Length = 1034

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 78/695 (11%), Positives = 192/695 (27%), Gaps = 50/695 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ S+I  IGL       L +  + ++P                   + +   
Sbjct: 9   RRPVLALVVSSLIVLIGLFA-----LSKLPIRQYPQLESST-------------ITITTQ 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  S ++       S  Q  + +T+    +R       +V  
Sbjct: 51  YPGASAKLMQGFVTQPIAQAVSSVEGVDYLSSSSVQGSSLVTVRMELNRDSTQALAQVMA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  KL  +    ++  ++ +  ++     +   +   A   +  + R         
Sbjct: 111 KVNQVRYKLPKEAYDPVIELSSGESTAVAYIGFSSTTLSIPA--LTDYLSRVVEPMYSSI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +        + +    D  +L     + A ++      N           +     
Sbjct: 169 EGVAKVQVFGGQQLAMRLWLDADKLAGRGLSAADVAQAVRQNNYQAAPGKVKGEY----- 223

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                           ++    N D        D+     G           I    A  
Sbjct: 224 ---------------VISNVYVNTDLTNVSEFQDLVIRNDGNGLVRLRDVGTIELGAAAT 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               ++                +    ++    L   +     P     +          
Sbjct: 269 ETSGLMNGEPAIYLGLFATPTGNPLVIVDGMNKLMPDIIKTLPPNVKVEMAFETSRFIKA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V+ V+++ +   +  ++   +I L+++   AL+   G ++ L ++
Sbjct: 329 SIDQVFHTLVEALLIVIAVIYLCLGSIRSVIIPILAIPLSMLGAAALMMAFGFSINLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +     + +S   +  +G       +    IT       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENVHRHIEEGKSPVLAALIGAREVAGPVIAMTITLAAVYAPI 448

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFF 532
                  G   + FA+T+  S+++S   A+++   M  F++  K+ +     +      F
Sbjct: 449 GLMSGLTGALFKEFALTLAGSVIVSGIVALTLSPVMSSFMLNSKQNEGRMAHMAEKFFAF 508

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L            R   +   I   +     L        +         + A +    +
Sbjct: 509 LAHYYTKGLNFSLRHRWITGIIAVFVFISLPLLYQSAPRELAPVEDQSAVLTAIKSPQHA 568

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +                    ++  +        S      L   +K+      + +  
Sbjct: 569 NLEYVERFSHKLHDVMMELPETESTWIINGTDGISSSFGGTNLTSWEKRDRPASAIQSDL 628

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             ++ G      +    +  +  S   + + + +R
Sbjct: 629 QAKV-GDVEGNSIFVFQLPALPGSTGGLPVQMVLR 662



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 95/280 (33%), Gaps = 7/280 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              I  ++ +     +     + +    N  V L  V +        + S         +
Sbjct: 222 EYVISNVYVNTDLTNVSEFQDLVIRNDGNGLVRLRDVGTIELGAAATETSGLMNGEPAIY 281

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L       G+ +     +  +   I + +P +          +  +  I +    ++ + 
Sbjct: 282 LGLFATPTGNPLVIVDGMNKLMPDIIKTLPPNVKVEMAFETSRFIKASIDQVFHTLVEAL 341

Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           + ++  I++        +  I  + L +         FG   NL  + A++  IG  V+D
Sbjct: 342 LIVIAVIYLCLGSIRSVIIPILAIPLSMLGAAALMMAFGFSINLLTLLAMVLAIGLVVDD 401

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +      S          E  G  +  ++       P+ +     G++
Sbjct: 402 AIVVVENVH---RHIEEGKSPVLAALIGAREVAGPVIAMTITLAAVYAPIGLMSGLTGAL 458

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              FA+ +A  ++V+   ++ ++  +  F+ + +    R+
Sbjct: 459 FKEFALTLAGSVIVSGIVALTLSPVMSSFMLNSKQNEGRM 498



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 81/247 (32%), Gaps = 10/247 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     + +      + QI       F+ +   + +    PG ++ Q           
Sbjct: 765  VKAQDGTMIPLSTVVEINTQIEPNKLTQFNQQNAAIFQAIPAPGVTLGQAVSYLESIASA 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L        + + I + + +  +++     L  + T+ 
Sbjct: 825  LPAGFSHDWQSDSRQYKQEGNTLA----FAFMAALIIIYLVLAAQYESLVDPLIILITVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     N+     ++TLIG      +++ +   +        +  R  I
Sbjct: 881  LSICGALIPLALGYATLNIYTQIGLVTLIGLISKHGILMVEFANE--LQAHEGLDKRQAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             K+    L   + T+ A  I ++P+      G +      + +  G++V    ++F+   
Sbjct: 939  LKAAQIRLRPILMTTAAMVIGLVPLLFATGAGANSRFGLGLVIVTGMLVGTLFTLFVLPT 998

Query: 819  ILLFIYD 825
            I   +  
Sbjct: 999  IYSLLAR 1005


>gi|24113458|ref|NP_707968.1| multidrug efflux system subunit MdtC [Shigella flexneri 2a str.
           301]
 gi|60390089|sp|Q83KI4|MDTC_SHIFL RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|24052489|gb|AAN43675.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 1021

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 69/603 (11%), Positives = 159/603 (26%), Gaps = 40/603 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +     P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLTPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K +           L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG--VLANRPVDLSVVRSN 597
                         +   +     L           +    L   + A++ +    +R  
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGK 574

Query: 598 LES 600
           L+ 
Sbjct: 575 LQD 577



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 799  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 858

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 859  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 918

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 919  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 976

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 977  PLEITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1013


>gi|296116083|ref|ZP_06834703.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Gluconacetobacter hansenii ATCC 23769]
 gi|295977437|gb|EFG84195.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Gluconacetobacter hansenii ATCC 23769]
          Length = 981

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 59/467 (12%), Positives = 125/467 (26%), Gaps = 18/467 (3%)

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
           I   S    Q +I L+FA     +    +V   LQ    KL  +     L  T   +  +
Sbjct: 10  ISAQSYASGQMEIDLTFAQGTNPDIAQVQVQNKLQLAQPKLPTEVTAQGLSITKAVKNFM 69

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++          +  + +  +     D +                  +    DPS+L + 
Sbjct: 70  MVIAFISTDGSMNGADIADYVASNISDPLSRVTGVGDHTLFGA-EYAMRIWLDPSKLYKY 128

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T   +       N        G    R        +     ++               
Sbjct: 129 AVTVGDVQAAIQAQNIQVSSGELGGLPARAGTRLDATIIGPTRLTSTE------------ 176

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +   +    +        +                  +          +   T 
Sbjct: 177 -EFNNILIRVQQDGSQVRIRDIARVELGPQTYNTNSFYNNMPASGMALKLAPGANQLKTE 235

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                  A L     P    +         + S      T      LV +V+ + +   +
Sbjct: 236 TAVREQIAELEKFFPPGLKTVYPLDTEPFIVLSIKEVIITLMEAIALVFVVMLIFLQNFR 295

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ + ++ T  +L+ LG ++   ++  +VL +GL VD  I+V E +     + 
Sbjct: 296 ATLIPTIAVPIVLLGTFGILAALGFSINTLTMLAMVLAVGLLVDDAIVVVENVERVMTEK 355

Query: 446 Q-SVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
             S   +          A   I        +         G   R F+IT+  ++ +S+ 
Sbjct: 356 NLSPVEAARQSMDEISGALVGIVLVLTAVFLPMAAFSGSTGVIYRQFSITIVAAMWLSVL 415

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
            A+ I  A+   +++    +                 A         
Sbjct: 416 VAMVITPALCATMLKPGTHEKTKGPAGWFNRHFTRMTAGYMKGVTRI 462



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 87/249 (34%), Gaps = 9/249 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + +   +      +R              N          +  +      Q +    
Sbjct: 178 FNNILIRVQQDGSQVRIRDIARVELGPQTYNTNSFYNNMPASGMALKLAPGANQLKTETA 237

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           V+++I E+          +        +   I++ I+ ++ +   + + + I  + +   
Sbjct: 238 VREQIAELEKFFPPGLKTVYPLDTEPFIVLSIKEVIITLMEAIALVFVVMLIFLQNFRAT 297

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + +  T G  A  G   N   + A++  +G  V+D +VV + +     +   
Sbjct: 298 LIPTIAVPIVLLGTFGILAALGFSINTLTMLAMVLAVGLLVDDAIVVVENV--ERVMTEK 355

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
           ++S  +   +S++E  G  V   +      LPMA + GS       F+I +   + ++  
Sbjct: 356 NLSPVEAARQSMDEISGALVGIVLVLTAVFLPMAAFSGSTGVIYRQFSITIVAAMWLSVL 415

Query: 811 SSIFIAAPI 819
            ++ I   +
Sbjct: 416 VAMVITPAL 424



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 80/234 (34%), Gaps = 12/234 (5%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
              ++++G   F +  Q   G S   +                                 
Sbjct: 741 QKVEDYNGLNAFEILGQPAAGFSSGDSIAAIKEILAKLPTGIGYEWTGLSYEQIASGSST 800

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                + VI+  + +     +   W      +  + L +   +      G+  ++     
Sbjct: 801 GPLYALAVIVILLCLA---ALYESWAIPFAVLLVIPLGVLGAIVATLSRGLANDVYFQVG 857

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +LT +G +V + +++ +  +     +    +  D + ++  E L   + TS+A  + V P
Sbjct: 858 LLTTVGLAVKNAILIVEFAK---AFFEQGKTLEDSVMEAGRERLRPILMTSIAFVVGVFP 914

Query: 786 MAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAA---PILLFIYDWRAKNARI 833
           +A+  G+   +       +  G++ A   +++       ++L ++  R  N R+
Sbjct: 915 LAIASGAGSAARVAIGTAVVGGMLTATLLAVYFVPLFFVVVLRLFKVRRMNERV 968


>gi|254561662|ref|YP_003068757.1| multidrug efflux protein subunit B [Methylobacterium extorquens
           DM4]
 gi|254268940|emb|CAX24901.1| multidrug efflux protein, subunit B; RND efflux transporter
           [Methylobacterium extorquens DM4]
          Length = 1045

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 61/515 (11%), Positives = 129/515 (25%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I  +G +  L   +       +P+                         
Sbjct: 10  RPVATTLSMLAILIVGAVSYLNLPVSALPAVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F      +     V   +   
Sbjct: 56  PEVMTSAVTAPLERQFGQMANLNQMSSQSSAGASVITLQFNLDIPLDIAEQSVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPTDLPAPPIYAKVNPADAPVLT-LALTSATIPLTQVRDLAETRLAQKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +   +         +       N +             +      
Sbjct: 175 VSMGGGQRPAVRVRFNSLAMAAYGLNIDDLRTTIANLNVNTPKGNIDGPTQSYAINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V D                                            +         G  
Sbjct: 235 VRDPAV--------------------YASAIIAYRNGAPVHLTDVAEVVDGAENTRLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T++    L   L+A         +          S    
Sbjct: 275 ADRTPAVILNIQRQPGANVIDTVDRIKRLLPQLQATMPASVSVAILTDRTTTIRASVHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V+F+ +      L+   S+ L++I  LA +   G +L   S+  + +
Sbjct: 335 QFELMLAIGLVVMVIFLFLRSFSATLIPSLSVPLSLIGALAAMDAWGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  + F +   G      TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVVIENIARHVEEGDNPFEAALKGSREIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FAIT+  +I+IS   ++++V  +   +
Sbjct: 455 VVGRLFREFAITLAATIVISAVVSLTLVPMLCARL 489



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 66/152 (43%), Gaps = 7/152 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + M+I++++R  +   L    ++ L +   L     +G   +  ++ A+    
Sbjct: 338 LMLAIGLVVMVIFLFLR-SFSATLIPSLSVPLSLIGALAAMDAWGFSLDNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +      +  +   K   E     +  +++    ++P+   G
Sbjct: 397 GFVVDDAIVVIENI---ARHVEEGDNPFEAALKGSREIGFTIISLTVSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              G +   FAI +A  IV++A  S+ +   +
Sbjct: 454 DVVGRLFREFAITLAATIVISAVVSLTLVPML 485



 Score = 41.2 bits (94), Expect = 0.69,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 75/197 (38%), Gaps = 8/197 (4%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            + ++ ++    +I   +                +   +  V  + I + I + + ++ + 
Sbjct: 830  QAVDALEAARKDINLPARFNVVPQGSVFAFESALSNELFLVCAAIITVYIVLGVLYESFI 889

Query: 693  ALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                I + +    I   LG    FG+  ++ A+  ++ LIG    + +++ D        
Sbjct: 890  HPITILSTLPSAGIGALLGLM-WFGLSLDIIAIIGIVLLIGIVKKNAIMMID--FALQAE 946

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 + RD I ++        + T++AA  + +PM V    G  +     I +A G++V
Sbjct: 947  REEGKAPRDAIYEACLLRFRPILMTTLAALFAAVPMIVGSGVGSELRQPLGIVIAGGLIV 1006

Query: 808  AASSSIFIAAPILLFIY 824
            +   ++F    I L   
Sbjct: 1007 SQVLTLFTTPVIYLAFD 1023


>gi|224536751|ref|ZP_03677290.1| hypothetical protein BACCELL_01627 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521667|gb|EEF90772.1| hypothetical protein BACCELL_01627 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1070

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 75/690 (10%), Positives = 188/690 (27%), Gaps = 56/690 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +GL+      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISVLIVILGLI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +          I++ F      +  A  V  
Sbjct: 51  TGANAQTVLNSVIAPLEDQINGVENMMYMTSNATNSGSADISVYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +++     +    +            I ++   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLMVFSIYDETDQYNIEFLENYANINLIPEVKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +    +   +     P  + Q       +       N       FG    R + 
Sbjct: 171 AGVGDAMVMG-VDYSMRIWLKPDVMAQYKLIPNDVVASLSEQNIEAAPGQFGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +T +    +                 +       
Sbjct: 227 TFQYTIRYKGRL-------------QQTEEFENIVIKALDNGEILRLKDIAELELGRLTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               + +        
Sbjct: 274 SFNNTVNGHKAVSCIVFQMAGSNATQTINDLETLLDGYSEKLPTGLKINIAQSANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVIKTLIEAFILVFIVVYIFLQDFRSTLIPAIAIPVALIATFFVLKLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIA 473
           + +VL I + VD  I+V E +  +  +      +           A  +I    ++  I 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARAASIDAMSELGGAIVSITLVMMSVFIP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK------------KMK 521
              +    G   R F +TM ++I  S   A+++  A+    ++              +  
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGFSALNALTLSPALCAIFLKPHDEHGEKKSTFISRFH 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           +       +         + F++ R+   G+     +  I  +         +   G  +
Sbjct: 514 TGFNVAYDKMLKKYKNNVLFFIQKRWLSFGLVAGSIVLLIFFMKITPTGMVPNEDTGTIM 573

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
           GV+   P         + +     ++ +     +  +    +  G   +   ++  +K  
Sbjct: 574 GVVTLPPGTSQERAQEVLNRVDSLVAAEPAVASRTVISGYSFIGGQGPSYGSIIIKLKNW 633

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                  ++      +  +  + +    ++
Sbjct: 634 EERSTMQNSNIVYITLFMRAQKIIKEAQVL 663



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 63/200 (31%), Gaps = 23/200 (11%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDI 704
               E+ G             G+I     + +Y+ +      +   L  + +    L+   
Sbjct: 853  FAYELGGMAREEAETSGSTTGLIFVLCFVFVYLLLSAQYESYILPLAVLLSIPFGLLGSF 912

Query: 705  TKTLGFFALFGIEF----------NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                G  A+  I            ++    A++ L+G    + +++ +     +      
Sbjct: 913  LFVNGMSAIGNISILKMIMGSMSNDIYMQIALIMLMGLLAKNAILIIEFA---LDRRKMG 969

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            +S            L   + TS+A  + ++P+ +    G +   +       G+++    
Sbjct: 970  MSITWAAVLGAAARLRPILMTSLAMIVGLIPLMLASGAGANGNRTLGTSAIGGMLIGMIL 1029

Query: 812  SIFIAAPILLFIYDWRAKNA 831
             IFI   + +     + K  
Sbjct: 1030 QIFIVPALFVAFQYLQEKIK 1049



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 79/211 (37%), Gaps = 6/211 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      LE +    +E +P     N            I + I  +I + I
Sbjct: 288 IVFQMAGSNATQTINDLETLLDGYSEKLPTGLKINIAQSANDFLFASIHEVIKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I    +   L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYIFLQDFRSTLIPAIAIPVALIATFFVLKLIGFSINLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R     +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SARAASIDAMSELGGAIVSITLVMMSVFIPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F + MA  I  +A +++ ++  +      
Sbjct: 466 RQFGLTMAIAIGFSALNALTLSPALCAIFLK 496


>gi|238783829|ref|ZP_04627847.1| Multidrug resistance protein mdtC [Yersinia bercovieri ATCC 43970]
 gi|238715216|gb|EEQ07210.1| Multidrug resistance protein mdtC [Yersinia bercovieri ATCC 43970]
          Length = 1013

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 72/619 (11%), Positives = 160/619 (25%), Gaps = 35/619 (5%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +             +   + + +   +    +     +    
Sbjct: 17  GFSLLPVSPLPQVDYPVIM---------VSASMPGADPETMASSIATPLERALGRISGVN 67

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK-KNLLVTTTEKEIS 144
               +      +I L F  +R     A  V   L    S L      +         +  
Sbjct: 68  EMTSTSSLGSTRIILQFDLNRDINGAARDVQAALNAAQSLLPTGMPNRPTYYKMNPSDAP 127

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           I++     D       +       +   +I  +E           L  +  E +PS L  
Sbjct: 128 IMIMTLTSDTFTQG--QLYDFASTKLAQKIAQTEGVSDVSVGGSSLPAVRVELNPSALFN 185

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              +   +       N  +                   ++                    
Sbjct: 186 QGVSLDAVRQAITAANVRRPQGSVDSHEQHWQVQANDEIKTA------------------ 227

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                N+   +  V +  +         + S +   +   T
Sbjct: 228 --EGYRPLIIHYNNGSPVRLQDVANVVDSVQDVRNAGMSDGKSAVLLVISREPGANIIAT 285

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        LRA         + +        S    + +  I   LV++V+F+ +  G
Sbjct: 286 VDRIRAELPALRASIPASIELKIAQDRSPTIRASLEEVERSLIIAVALVILVVFLFLRSG 345

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   ++ +++I T   + L G +L   S+  + +  G  VD  I+V E I      
Sbjct: 346 RATLIPAVAVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENISRHLEA 405

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMF 501
                 +   G      T+   +I+ +   + L    G      R FAIT+ ++I IS+ 
Sbjct: 406 GVKPMVAALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAITLSVAIGISLV 465

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            ++++   M   ++R +              L+              G    ++  + S 
Sbjct: 466 ISLTLTPMMCAHLLRAQPAGQQPRIRGFGKVLLAIQRGYGRSLNWVLGHTRWVMVVLLST 525

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             L               Q        +      S     Q      +  + +       
Sbjct: 526 IALNVWLYISIPKTFFPEQDTGRMMGFIQADQSISFQAMQQKLKNFMKIINDDPAVDNVT 585

Query: 622 QYQPGDSVAQTRVLEMVKK 640
            +  G       +   +K 
Sbjct: 586 GFTGGSRTNSGSMFISLKP 604



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 86/241 (35%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV L  V + ++S+Q    +  +       LV  +    + +A    +     
Sbjct: 235 IHYNNGSPVRLQDVANVVDSVQDVRNAGMSDGKSAVLLVISREPGANIIATVDRIRAELP 294

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P S             R  + +    +II+   +++ +++  +     L     
Sbjct: 295 ALRASIPASIELKIAQDRSPTIRASLEEVERSLIIAVALVILVVFLFLRSGRATLIPAVA 354

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +    
Sbjct: 355 VPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPMV 411

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + + E     +  S++     +P+ +     G +   FAI ++  I ++   S+ + 
Sbjct: 412 AALRGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAITLSVAIGISLVISLTLT 471

Query: 817 A 817
            
Sbjct: 472 P 472



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 95/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +  + +     V++ +TE+   ++++ T     ++ +E ++  +  ++ +   
Sbjct: 792  TISFNLPEGGSLSAATAAVERAMTELGVPASVRGTFTGTAQVFQETLKSQLWLIMAAIAT 851

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 852  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 911

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D      +     IS RD I ++        + T++AA    LP+ +    G  +  
Sbjct: 912  MMVDFALDAQRNGN--ISARDAIFQASLLRFRPILMTTLAALFGALPLVLGSGDGAELRQ 969

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+VV+   +++    + L+    R++ ++
Sbjct: 970  PLGITIVGGLVVSQLLTLYTTPVVYLYFDRLRSRFSK 1006


>gi|237722261|ref|ZP_04552742.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448071|gb|EEO53862.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 1034

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/585 (10%), Positives = 158/585 (27%), Gaps = 43/585 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D I       +          +     P +
Sbjct: 135 PSQLMTLCLTSTDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAQPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSTVGQFEDIVVRANANGSIIRLKDVARVSLEASSYNTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        +           +          S      T      LV++V+++ +
Sbjct: 301 MEVAERVKEAMDEISKNFPEGLSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGVEHI 420

Query: 442 NRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSIL 497
                 S + +     +   S +  +++      V + F     G   R F +T+ +S+L
Sbjct: 421 METEHLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ-------FMRARFWGV 550
           IS   A+++   M   I++    K  +I        +                  R    
Sbjct: 481 ISTVVALTLSPVMCSLILKPDSGKKKNIVFRKINEWLGIGSNKYVAAVTRTIKHPRRVLS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              ++     +           ++ +G  ++ +       L   R
Sbjct: 541 AFGMVLIAIMLIHRIIPTSFLPVEDQGYFKIELELPEGATLERTR 585



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGV--EH 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
            + T  +S  +   K++N      + TS+      +P+  + G  G +   F + +   +
Sbjct: 420 IMETEHLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSV 479

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   ++   +P++  +
Sbjct: 480 LISTVVAL-TLSPVMCSL 496



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 57/148 (38%), Gaps = 8/148 (5%)

Query: 689  KWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +  + +L +  +   LG +   G+E ++     ++ L+G +  + +++ +  +  
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVWG-CGLENDVYFQIGLVMLVGLAAKNAILIVEFAK-- 944

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                            +        + TS+A  + +LPM +    G +   +    + FG
Sbjct: 945  -VQVDKGEDLVQSAIYAAKLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFG 1003

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++ A    I +     + +Y  ++K  +
Sbjct: 1004 MIFAIVFGIILVPFFFVMVYKTKSKILK 1031


>gi|207727494|ref|YP_002255888.1| multidrug efflux system transmembrane protein (partial sequence)
           [Ralstonia solanacearum MolK2]
 gi|206590731|emb|CAQ56343.1| multidrug efflux system transmembrane protein (partial sequence)
           [Ralstonia solanacearum MolK2]
          Length = 392

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 39/416 (9%), Positives = 100/416 (24%), Gaps = 38/416 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   I   G +        Q  + ++P+  P               +++    
Sbjct: 8   RPVFAWVLALFIIVAGAISI-----TQLPIAQYPTIAPP-------------SILITATY 49

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN--KITLSFADSRFKENIADKVT 116
                  L       +   +             +       IT++F            V 
Sbjct: 50  PGASAKTLDDAVTSIIEQEMNGADGLLYIESVSQAGNGQATITVTFKPGTDPALAQVDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ V ++L     +  +     +   ++ +           +     I R  +++I  
Sbjct: 110 NRLKRVEARLPSSVTQQGVQVDKTRSNFLLFATLISKDGKMDPVALGDYISRNVLNEIKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q +        +    DP++L     T   +       N        G       
Sbjct: 170 VPGVGQAVLFGT-ERAMRIWVDPAKLVGYKLTPTDVYNAIRNQNALVSAGTLGDLPSTSD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +   V + G             T +    +   +    +        +      
Sbjct: 229 QP----IAATVVVEGQ---------MTTTEQFGNIVLVSKPDGSQVRVKDVARLELGGQT 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +    I+          +   T +        L           +         
Sbjct: 276 YATSARINGQPISAIGVQLSPTGNALGTAKAVKAKLDELSKYFPAGVEYKIPYDTSKFVQ 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
            S      T      LV +V+ + +   ++ L+    + ++++   A ++ LG ++
Sbjct: 336 ISIEEVVKTLFEAMALVFLVMLVFLQNIRYTLIPSIVVPISLLGAFATMNALGFSI 391


>gi|34498188|ref|NP_902403.1| drug efflux pump transmembrane protein [Chromobacterium violaceum
           ATCC 12472]
 gi|34104043|gb|AAQ60403.1| probable drug efflux pump transmembrane protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 1033

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 59/529 (11%), Positives = 142/529 (26%), Gaps = 38/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+           +   P                    +     
Sbjct: 10  RPVATTLLMVAILLTGLVA-----WRMLPVSALPEVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F+     +    +V   +   
Sbjct: 56  PDVMTSSVTAPLERQFGQMPGLSQMSSSSSGGASVITLQFSLDLTLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +L+   +        +    +  +   ++   +    
Sbjct: 116 GNLLPSDLPSPPVYNKVNPADTPILT-IAVSSPTMPLTKLEDMVDTRLAQKLSQVQGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L     T   +       N ++    F       +      
Sbjct: 175 VSISGGQRPAVRIQSNPKALASRGLTLEDIRTAIASANVNQAKGSFDGPSQASTVDGNDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++                          ++          +      + +          
Sbjct: 235 LQSA--------------------DEYKNVIIAYQNGAPVYLRDVAKVVESAENTRLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +          L   L+          V          S    
Sbjct: 275 SGTTPSIILNVQRQPGANVIQVTNRIKSLLPQLQGTLPGSVDVHVLSDRTVTIRASVEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 EFELMLAIALVVMVIFVFLRNVPATIIPAVAVPLSLVGTFGVMYLTGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +      +   G  +   TI    I+ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYIEEGDKPLEAALKGSKQIGFTIISLTISLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
             G   R FAIT+ +SILIS F ++++   M   ++++   +       
Sbjct: 455 VVGRLFREFAITLAVSILISAFISLTLTPMMCARLLKHVPEEKQGRFYH 503



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 90/256 (35%), Gaps = 12/256 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  ++A +      +R   + ++  + +           + L  Q     
Sbjct: 232 NDQLQSADEYKNVIIAYQNGAPVYLRDVAKVVESAENTRLAAWSGTTPSIILNVQRQPGA 291

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIAMLIYI 684
              +V   +K  + ++           V    +  +          + + I+ + M+I++
Sbjct: 292 NVIQVTNRIKSLLPQLQGTLPGSVDVHVLSDRTVTIRASVEDVEFELMLAIALVVMVIFV 351

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           ++R      +     + L +  T G   L G   N   + A+    G+ V+D +V+ + +
Sbjct: 352 FLR-NVPATIIPAVAVPLSLVGTFGVMYLTGFSINNLTLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +         +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYIEEGDKPLEAALKGSKQIGFTIISLTISLIAVLIPLLFMGDVVGRLFREFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  I+++A  S+ +  
Sbjct: 468 AVSILISAFISLTLTP 483



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 82/204 (40%), Gaps = 6/204 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              ++ +++   E+   +++           +  +   +  ++ + + M I + + ++ + 
Sbjct: 820  EAVDAIRQAEAELGLPASMDTKFQGAAMAFQASLSNTLWLILAAIVTMYIVLGVLYESYI 879

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    + G + ++ A+  ++ LIG    + +++ D   +     
Sbjct: 880  HPITILSTLPSAGIGALLALMVSGTDLSVIAIIGIILLIGIVKKNAIMMIDFALE--AER 937

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               ++ R+ I ++        + T+MAA +  LP+ +    G  +     I M  G++V+
Sbjct: 938  EQGMAPREAIYQACLLRFRPILMTTMAALLGALPLMMGGGMGSELRQPLGITMVGGLMVS 997

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               ++F    I L       +  R
Sbjct: 998  QVLTLFTTPVIYLAFDRLARRFGR 1021


>gi|255015332|ref|ZP_05287458.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           2_1_7]
          Length = 1073

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 74/574 (12%), Positives = 162/574 (28%), Gaps = 49/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G L  +        + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGFLGLI-----SLPVTQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S     N   +I++ F      +  A  V  
Sbjct: 51  TGANAQTVLNSVIAPLEDQINGVENMMYMSSTASNNGSAEISIYFTQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  + T   +   +++     +     +           I ++   
Sbjct: 111 RVSMAQGLLPAEVTQIGVTTQKRQNSMLLVFSVFAEDDRYDSEFLENYAKINLIPEVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q   + + ++      N       FG    R + 
Sbjct: 171 HGVGDANVLGT-DYSMRIWLKPDVMAQYKLSPSDVTVALSEQNVEAAPGSFGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              + ++    +                +I       
Sbjct: 227 SFQYTIRYKGRL-------------QEANEFEQIVVKALPDGEVLRLKDIADIELGRLTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I       +   TI     L    +    P     V          
Sbjct: 274 NFINRVNGHDAVTCIVYQMPGTNATETISNIETLLEETQLTMPPGMKVNVSMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G ++ L ++
Sbjct: 334 SIHEVIKTLLEAFVLVFIVVYVFLQDLRSTLIPAIAIPVALIGTFFMLSLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   + 
Sbjct: 394 CAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSAKLASIDAMSELGGAIVSITLVMMSVFIP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPL 528
           + F G   G   R F +TM ++I +S   A+++  A+           +K+ K+  I+  
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGLSALNALTLSPALCAIFLKPHDEEHKEKKTTFISRF 513

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
              F       +   + +          S   + 
Sbjct: 514 HTSFNAAYDSLLAKYKKQVVFFIQKKWLSFGIVA 547



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 87/311 (27%), Gaps = 28/311 (9%)

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                      +         ++     +   + +    + V +   +        ++ + 
Sbjct: 750  QGYYGGLYASNFNRFGKMYRVMVQADPDLRKNMESMKNIKVKSGNDMAPISQFITMKKVY 809

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
              DI  +        ++        S    + ++ V K              E+ G    
Sbjct: 810  GPDIISRFNMYTAIKVMVAPADGYTSGQALKAIDEVAKTTLPAGFDY-----ELGGMARE 864

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALFG 715
                      +I     + +Y+ +      +   L  + +    L+       G+ AL  
Sbjct: 865  EASTSGSTTALIFLLCFVFVYLLLSAQYESYILPLSVLLSVPFGLMGSFLFVQGWAALGN 924

Query: 716  IEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            I      V           A++ L+G    + +++ +   +  ++    +S         
Sbjct: 925  IPALKMIVGTMSNNIYMQIALIMLVGLLAKNAILIVEFALERRRM---GMSITWAAVLGA 981

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + TS+A  + +LPM   +G       +       G+ +     IFI   + + 
Sbjct: 982  AARLRPILMTSLAMVVGLLPMMFAFGVGAHGNRTLGTAAIGGMFIGMIFQIFIVPVLFVV 1041

Query: 823  IYDWRAKNARI 833
                + K   I
Sbjct: 1042 FQYLQEKFKPI 1052



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          +   +    +    +  Q    ++      +E + ++    +P     
Sbjct: 262 DIADIELGRLTYNFINRVNGHDAVTCIVYQMPGTNATETISNIETLLEETQLTMPPGMKV 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + I  ++ + + + I +++        L     + + +  T    
Sbjct: 322 NVSMNANDFLFASIHEVIKTLLEAFVLVFIVVYVFLQDLRSTLIPAIAIPVALIGTFFML 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +     S     +   +++E  G 
Sbjct: 382 SLIGFSINLLTLCAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSAKLASI--DAMSELGGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  ++      +P++  GG+       F + MA  I ++A +++ ++  +      
Sbjct: 440 IVSITLVMMSVFIPVSFMGGTAGTFYRQFGLTMAIAIGLSALNALTLSPALCAIFLK 496


>gi|260170920|ref|ZP_05757332.1| putative aminoglycoside efflux pump (acriflavine resistance
           protein) [Bacteroides sp. D2]
 gi|315919250|ref|ZP_07915490.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693125|gb|EFS29960.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1034

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/585 (10%), Positives = 158/585 (27%), Gaps = 43/585 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D I       +          +     P +
Sbjct: 135 PSQLMTLCLTSTDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAQPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSTVGQFEDIVVRANANGSIIRLKDVARVSLEASSYNTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        +           +          S      T      LV++V+++ +
Sbjct: 301 MEVAERVKEAMDEISKNFPEGLSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGVEHI 420

Query: 442 NRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSIL 497
                 S + +     +   S +  +++      V + F     G   R F +T+ +S+L
Sbjct: 421 METEHLSPYEATKKAMNGLSSALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ-------FMRARFWGV 550
           IS   A+++   M   I++    K  +I        +                  R    
Sbjct: 481 ISTVVALTLSPVMCSLILKPDSGKKKNIVFRKINEWLGIGSNKYVAAVTRTIKHPRRVLS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              ++     +           ++ +G  ++ +       L   R
Sbjct: 541 AFGMVLIAIMLIHRIIPTSFLPVEDQGYFKIELELPEGATLERTR 585



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGV--EH 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
            + T  +S  +   K++N      + TS+      +P+  + G  G +   F + +   +
Sbjct: 420 IMETEHLSPYEATKKAMNGLSSALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSV 479

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   ++   +P++  +
Sbjct: 480 LISTVVAL-TLSPVMCSL 496



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVWVCGLENDVYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDKGEDLVQSAIYAAKLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    I +     + +Y  ++K  +
Sbjct: 1005 IFAIVFGIILVPFFFVMVYKTKSKILK 1031


>gi|308189139|ref|YP_003933270.1| RND efflux system, transporter protein [Pantoea vagans C9-1]
 gi|308059649|gb|ADO11821.1| Putative RND efflux system, transporter protein [Pantoea vagans
           C9-1]
          Length = 1075

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 62/530 (11%), Positives = 148/530 (27%), Gaps = 38/530 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G+               +P+                   +     
Sbjct: 10  RPVATILLMVGVLIAGIFAYKFLSTSALPQVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PDVMASSVTSPLERQLGQMAGLSQMSSTSASGSSVITLKFSLDLSLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N+ L  D              S V++   I        E    +  +   ++        
Sbjct: 116 NNLLPDDLPNPPTYKKVNPADSAVVTLAAISD-TLPLTEVQDLVNTRVALKLSQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     T   ++      N +     F  ++   +      
Sbjct: 175 VTLAGGHQPAIRVQMNPQALAAHHLTLEAVNTLIGNSNVNGSKGGFDGKYHSVTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                      ++                +I +          
Sbjct: 235 LRTAEE--------------------YGNLILTYENGAALRLKDIAHIEQGPENSFQSAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++        L+A         +          S S  
Sbjct: 275 ANNQPAIVISVQRQPGANVIQVVDNIKAQLPALQAALPDGVKMTILSDRTQTIRASISDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      L+   ++ L+++ T  ++ L G +L   S+  + +
Sbjct: 335 QFELMLSIALVVMVTFLFLRNVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  +D  I+V E I     + +S   +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVIDDAIVVVENISRRLEQGESPMEAALKGSQQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             G   R FAIT+ ++IL+SM  ++++   +  +++R+   +        
Sbjct: 455 VVGRLFREFAITLAVAILVSMLVSLTLTPMLCAYLLRHIPPEQQSTFARK 504



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 86/231 (37%), Gaps = 12/231 (5%)

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             + SFQ+        + +  Q        +V++ +K ++  +           +    +
Sbjct: 265 GPENSFQSAWANNQPAIVISVQRQPGANVIQVVDNIKAQLPALQAALPDGVKMTILSDRT 324

Query: 663 RELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           + +          + + I+ + M+ ++++R      L     + L +  T G   L G  
Sbjct: 325 QTIRASISDVQFELMLSIALVVMVTFLFLR-NVAATLIPSVAVPLSLVGTFGVMYLAGFS 383

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            N  ++ A+    G+ ++D +VV + +    +      S  +   K   +     +  + 
Sbjct: 384 LNNLSLMALTIATGFVIDDAIVVVENI---SRRLEQGESPMEAALKGSQQIGFTIISLTF 440

Query: 778 AAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +    ++P+   G   G +   FAI +A  I+V+   S+ +   +  ++  
Sbjct: 441 SLIAVLIPLLFMGDVVGRLFREFAITLAVAILVSMLVSLTLTPMLCAYLLR 491



 Score = 62.4 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 78/202 (38%), Gaps = 6/202 (2%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
                  + +   ++    +            +      +  ++ + I M + + I ++ +
Sbjct: 860  EDGQRAIAEVRQQLQLPESTTLRYQGETSAFQSATGNTLWLILAALITMYVVLGILYESF 919

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               +  ++TL       L    L G EF+L A+  V+ LIG    + +++ D   +    
Sbjct: 920  IHPVTILSTLPSAAVGALLTLLLAGTEFSLIALIGVILLIGIVKKNAIMMIDFALE--AE 977

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
            +   +S R+ I ++        + T+MAA +  LP+ +    G  +     + +  G++V
Sbjct: 978  HQQHLSAREAIHQACLLRFRPILMTTMAALLGALPLMLASGSGAELRQPLGLVIVGGLIV 1037

Query: 808  AASSSIFIAAPILLFIYDWRAK 829
            +   ++F    I L+      +
Sbjct: 1038 SQVLTLFSTPVIYLWFDGLAQR 1059


>gi|213967020|ref|ZP_03395170.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato T1]
 gi|301385205|ref|ZP_07233623.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|302130146|ref|ZP_07256136.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213928342|gb|EEB61887.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato T1]
          Length = 1035

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/589 (11%), Positives = 165/589 (28%), Gaps = 44/589 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I  +G +           +   P+      +             L   
Sbjct: 9   RRPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q   +I L F  +R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSLGSIAGVNTMTSNSSQGSTRIILQFDLNRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q   +   +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAITNANVRRPKGFVEDDQHNWQVQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 +   +    +  
Sbjct: 234 QLESAKD--------------------YAPLIIRYQDGATLRLKDVAKVSDAVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         LRA         +          +   
Sbjct: 274 FYNNDRAVLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSRFF 532
           G      R F+IT+ +SI++S+  ++++   +    ++          +        R  
Sbjct: 454 GLVESLFREFSITLSVSIVVSLIVSLTLTPMLCARWLKPHVAEKDNAFQRWSERVNDRMV 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              D      +R R   V   ++  I ++ L       +      G  +
Sbjct: 514 AAYDRSLGWVLRHRRLTVLSLLVTVIVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 97/262 (37%), Gaps = 9/262 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  QDPVTLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   S I +             +     ++ S +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPSDIISKMAGTANAFASTQKGQPWMILGSLLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLEREQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++  + I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPEESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    + L++   R +  +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHRFNK 1021


>gi|298483502|ref|ZP_07001678.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp. D22]
 gi|295085122|emb|CBK66645.1| The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile
           Efflux-1 (HAE1) Family [Bacteroides xylanisolvens XB1A]
 gi|298270259|gb|EFI11844.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp. D22]
          Length = 1034

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 64/585 (10%), Positives = 158/585 (27%), Gaps = 43/585 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D I       +          +     P +
Sbjct: 135 PSQLMTLCLTSTDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAQPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSTVGQFEDIVVRANANGSIIRLKDVARVSLEASSYNTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        +           +          S      T      LV++V+++ +
Sbjct: 301 MEVAERVKEAMDEISKNFPEGLSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGVEHI 420

Query: 442 NRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSIL 497
                 S + +     +   S +  +++      V + F     G   R F +T+ +S+L
Sbjct: 421 METEHLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ-------FMRARFWGV 550
           IS   A+++   M   I++    K  +I        +                  R    
Sbjct: 481 ISTVVALTLSPVMCSLILKPDNGKKKNIVFRKINEWLGIGSNKYVAAVTRTIKHPRRVLS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              ++     +           ++ +G  ++ +       L   R
Sbjct: 541 AFGMVLIAIMLIHRIIPTSFLPVEDQGYFKIELELPEGATLERTR 585



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 62/147 (42%), Gaps = 6/147 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGV--EH 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
            + T  +S  +   K++N      + TS+      +P+  + G  G +   F + +   +
Sbjct: 420 IMETEHLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           +++   ++   +P++  +        +
Sbjct: 480 LISTVVAL-TLSPVMCSLILKPDNGKK 505



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVWVCGLENDVYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDKGEDLVQSAIYAAKLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    I +     + +Y  ++K  +
Sbjct: 1005 IFAIVFGIILVPFFFVMVYKTKSKILK 1031


>gi|300023543|ref|YP_003756154.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Hyphomicrobium denitrificans ATCC 51888]
 gi|299525364|gb|ADJ23833.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Hyphomicrobium denitrificans ATCC 51888]
          Length = 1049

 Score =  150 bits (379), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 61/531 (11%), Positives = 152/531 (28%), Gaps = 41/531 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +    G+L      L      ++P  +P               + +    
Sbjct: 9   RPRLAIVIAIVTTIAGVLA-----LYAIPFAQYPDIVPP-------------QVQVTTTY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
               +  +       + + +     +         +    +  SF      +     V  
Sbjct: 51  PGANSSVVDTSIAQPIEAQVVGVDKMIYMKSVSGDDGSYTLICSFELGTNPDINTVNVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   S L  + ++  +    +    + +      +     +  S  +    +DQI  +
Sbjct: 111 RVQVALSSLPPEVQRQGVSVKKKSSALLGVVALYSPKHTHDPLFLSNYVTINLLDQIKST 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +       RL  L  TT  +       N        G R + +  
Sbjct: 171 PGVGDAVLWGPQDYAMRAWVKTDRLTGLGLTTGDVINAIQAQNVQAAVGRIGARPISNEQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  ++ K  ++ +                   +                 +    A +
Sbjct: 231 QLQLNIQTKGRLNSVA-------------DFEKIVLRTNPDGSVLRLGDVARLELGAANL 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +                 +   T++                    V          
Sbjct: 278 DRDTLFNGGPAAVIAIYQSPGANAITTLKAVRTKLETAEKRFPDDMAWKVTYDPTQFVTD 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +    + T      LV++V+++ +   +  L+   ++ +++I    +L  +G +    S+
Sbjct: 338 TIHEVRKTLIEAFILVVLVVYLFLGSVRATLIPTLAVPVSLIGAFIVLLAIGYSANTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATV 475
             IVL IG+ VD  I+V E +     ++   S   +     +   + I    +  L   V
Sbjct: 398 LAIVLAIGIVVDDAIVVVENVERVMEEHPELSPPEATKRAMAEITAPIIAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            + F  G +    R FA+T+ +++L+S   A+++  A+   ++        
Sbjct: 458 PVAFIPGISGELFRQFAVTIAVAMLLSAINALTLSPALCGILLTPHHGPRR 508



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 73/219 (33%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              +R     G   A     + +                        +E   +G   +I+ 
Sbjct: 817  NNLRAVTIQGSPAAGVSSGQALNAMEAVAARTLPDGYAGEWTDTAFQEKRAEGKTALILG 876

Query: 677  AIAMLIY---IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y   + +   W   +  + ++ + +       A+ G+  +L     ++ LIG +
Sbjct: 877  FALLFAYLFLVALYESWTIPVPVLLSVSVGVCGAFAAIAIGGLTLDLYGQIGMVVLIGLA 936

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ +  ++        ++  +   +         + TS A  + +LP+ V  G+ 
Sbjct: 937  AKNGILIVEFAKEQR---ERGVALDEAATEGSRLRFRPVMMTSFAFILGLLPLVVAVGAS 993

Query: 794  ---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                 +   P+  G++ A+   IF    + +     R K
Sbjct: 994  ELARRNVGTPVFGGMIAASIIGIFAIPSLYVTFQAIREK 1032



 Score = 41.6 bits (95), Expect = 0.58,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 55/137 (40%), Gaps = 10/137 (7%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
                L     + + +          G   N  ++ A++  IG  V+D +VV    +R+ 
Sbjct: 363 SVRATLIPTLAVPVSLIGAFIVLLAIGYSANTVSLLAIVLAIGIVVDDAIVVVENVERVM 422

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +        +S  +   +++ E     +  ++      +P+A      G +   FA+ +A
Sbjct: 423 EE----HPELSPPEATKRAMAEITAPIIAITLVLLSVFVPVAFIPGISGELFRQFAVTIA 478

Query: 803 FGIVVAASSSIFIAAPI 819
             ++++A +++ ++  +
Sbjct: 479 VAMLLSAINALTLSPAL 495


>gi|237715962|ref|ZP_04546443.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262407575|ref|ZP_06084123.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294645739|ref|ZP_06723425.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CC 2a]
 gi|294808338|ref|ZP_06767093.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229443609|gb|EEO49400.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262354383|gb|EEZ03475.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292638945|gb|EFF57277.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CC 2a]
 gi|294444414|gb|EFG13126.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 1034

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/585 (10%), Positives = 157/585 (26%), Gaps = 43/585 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D I       +          +     P +
Sbjct: 135 PSQLMTLCLTSTDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAQPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSTVGQFEDIVVRANANGSIIRLKDVARVSLEASSYNTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        +           +          S      T      LV++V+++ +
Sbjct: 301 MEVAERVKEAMDEISKNFPEGLSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGVEHI 420

Query: 442 NRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV---LFFFGGGAVRGFAITMGLSIL 497
                 S + +     +   S +  +++      V    L    G   R F +T+ +S+L
Sbjct: 421 METEHLSPYEATKKAMNGLASALIATSLVLAAVFVPVSSLSGITGQLYRQFTVTIVVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ-------FMRARFWGV 550
           IS   A+++   M   I++    K  +I        +                  R    
Sbjct: 481 ISTVVALTLSPVMCSLILKPDNGKKKNIVFRKINEWLGIGSNKYVAAVTRTIKHPRRVLS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              ++     +           ++ +G  ++ +       L   R
Sbjct: 541 AFGMVLIAIMLIHRIIPTSFLPVEDQGYFKIELELPEGATLERTR 585



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 64/147 (43%), Gaps = 6/147 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + + +++
Sbjct: 362 SWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGV-EHI 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSM---AAFISVLPMAVWGGSVIGSFAIPMAFGI 805
                 +S  +   K++N      + TS+   A F+ V  ++   G +   F + +   +
Sbjct: 421 METEH-LSPYEATKKAMNGLASALIATSLVLAAVFVPVSSLSGITGQLYRQFTVTIVVSV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           +++   ++   +P++  +        +
Sbjct: 480 LISTVVAL-TLSPVMCSLILKPDNGKK 505



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVWVCGLENDVYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDKGEDLVQSAIYAAKLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    I +     + +Y  ++K  +
Sbjct: 1005 IFAIVFGIILVPFFFVMVYKTKSKILK 1031


>gi|172060134|ref|YP_001807786.1| acriflavin resistance protein [Burkholderia ambifaria MC40-6]
 gi|171992651|gb|ACB63570.1| acriflavin resistance protein [Burkholderia ambifaria MC40-6]
          Length = 1039

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 69/542 (12%), Positives = 151/542 (27%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAITSKTLPLTQVQDLTDTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKSGRPVMLTDVAKVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++        L+          +          +    
Sbjct: 275 VNAEPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELLLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  +   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGHTGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+               +I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHSPPPESHRFEARVHRVIDRVIA 514

Query: 540 IQ 541
             
Sbjct: 515 RY 516



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGHTGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAIVSLTLVP 483



 Score = 42.0 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +           R+ I ++        + T++AA +  +P+ V    G  + 
Sbjct: 927  IMMIDFALE--AERVEGKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGAGAGSELR 984

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                I +A G++V+   ++F    I L       +
Sbjct: 985  QPLGIAIAGGLIVSQVLTLFTTPVIYLGFDSLARR 1019


>gi|77463408|ref|YP_352912.1| RND family multidrug/cation transporter [Rhodobacter sphaeroides
           2.4.1]
 gi|77387826|gb|ABA79011.1| multidrug/cation efflux pump, RND superfamily [Rhodobacter
           sphaeroides 2.4.1]
          Length = 1025

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 74/539 (13%), Positives = 148/539 (27%), Gaps = 39/539 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L S I  IGL            + ++P                         
Sbjct: 9   RRPVASTVLASFILLIGLYSIF-----NLPVRQYPEVEETVVT---------ITTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+        +  +         R   + +++        +    +V   +Q 
Sbjct: 55  SPDLIQGFITAPIARAVATTENIDYVTSQSRPSASVVSVQMKLGANSDVALTEVLAKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  + +  ++V  T    +++            A + +  + R    ++   E   
Sbjct: 115 VRGELPSEAEDPVIVKGTGDNFALMY--LAALNPNMSAEQMTEYLERVIRPRMSTIEGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     T +++       N           +   S   Q 
Sbjct: 173 EIQIIGAAEYAMRVWIDPMKLAARNVTASEVLTAIRASNFLSAPGRTEGEYFARSIKLQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +     G          ++    A      
Sbjct: 233 TLQTPEAFGA--------------------LPIRSQGDEVVRLRDVADVELASAEPDSIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T          + A         +   +      S   
Sbjct: 273 TFNGQPGTFIGIFPTPAANPLTTEAAVIEELPAINATLPRGMEINLVYDSTETITDSIYE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +V++V+ + +   +  L+   +I L++I   A+L  LG ++ L S+  +V
Sbjct: 333 VFKTLAEDVAIVVVVILLFLGSFRSVLMPIVTIPLSLIGVCAVLLALGYSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +  S + +   G       +    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIDEGMSPYHAALKGMREITGPVIAMTITLAAVLAPLGFSG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
              G     FA  +  S++IS   A++I   M   +++                   + 
Sbjct: 453 GLTGSLFAEFAFALAGSVIISGVVALTITPMMSARLLKAGTGSRFQRIVDHTLEGTANW 511



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 53/135 (39%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ L +          G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLMPIVTIPLSLIGVCAVLLALGYSINLLSLLAMVLAIGLVVDDAIVVVENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +S      K + E  G  +  ++     + P+   G   GS+   FA  +A
Sbjct: 411 ---RHIDEGMSPYHAALKGMREITGPVIAMTITLAAVLAPLGFSGGLTGSLFAEFAFALA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++   ++ I  
Sbjct: 468 GSVIISGVVALTITP 482



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++    + + + + +  +F+ +      + ++ L I   +    L     N+     ++T
Sbjct: 849  LLAFAAAVVVIYLVLAAQFESFRDPFIIMMSVPLSIFGAILPLNLGLGTLNIYTQVGLIT 908

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG      +++ +    N +     ++ R  I  +    L   + T+ A  ++V+P+ +
Sbjct: 909  LIGLITKHGILMVE--FANQQREEHGLNRRQAIVAAAKVRLRPILMTTAAMALAVVPLII 966

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G     +  I +  G+++    ++F+      FI  
Sbjct: 967  AEGAGAEARQAMGIVIFTGLLIGTCFTLFVVPMFYTFISK 1006


>gi|163802156|ref|ZP_02196051.1| putative multidrug resistance protein [Vibrio sp. AND4]
 gi|159173961|gb|EDP58771.1| putative multidrug resistance protein [Vibrio sp. AND4]
          Length = 1040

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 76/609 (12%), Positives = 176/609 (28%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S    ++ IT++   +    +    +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSSSVLGKSTITVNMKLNTDPNSALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPAKMGALKLTATDVMTVLNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                      +                 +    +  +   
Sbjct: 233 QVSNVAELEA--------------------LVVKTGEGDVIRLGDIAKVSLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 NANGQEAVVAAINAAPSANPINIAADVLELLPQLDRNLPSNIDMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VVKTILEAAIIVLVVITLFLGSLRAVIIPIITIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ +S   A+++   M   +        K  + +          
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSKMLKANAEPSKFEQKVHHVLDGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +               I+F++  I   F        + KG + L   A    +L  
Sbjct: 513 YEKMLTTVMAHRPVIIAFAIIVFAVLPILFKFIPSELAPSEDKGVVVLMGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +   +  + 
Sbjct: 573 IEHTMSDVN 581



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +                   E            + +     +  +  ++   +
Sbjct: 251 DVIRLGDIAKVSLEKSHDIYRANANGQEAVVAAINAAPSANPINIAADVLELLPQLDRNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + +  ++ +AI +L+ I +        +  I T+ L + 
Sbjct: 311 PSNIDMNVMYDSTIAINESIHEVVKTILEAAIIVLVVITLFLGSLRAVIIPIITIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +    A+ ++
Sbjct: 488 MLKANAEPSK 497



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 68/784 (8%), Positives = 206/784 (26%), Gaps = 30/784 (3%)

Query: 71   QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               S+           G   + ++ +   +S   S             +    +      
Sbjct: 232  TQVSNVAELEALVVKTGEGDVIRLGDIAKVSLEKSHDIYRANANGQEAVVAAINAAPSAN 291

Query: 131  KKNL---LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG-S 186
              N+   ++    +    + S  +++ +    I  +  I       +  +   +  +   
Sbjct: 292  PINIAADVLELLPQLDRNLPSNIDMNVMYDSTIAINESIHEVVKTILEAAIIVLVVITLF 351

Query: 187  HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
               L  +        L  +       +        +    +  +  + D         D+
Sbjct: 352  LGSLRAVIIPIITIPLSLIGVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENVDR 411

Query: 247  VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
                G     A      +   PV+ ++           +     G             A 
Sbjct: 412  HIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL---TLAG 468

Query: 307  VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
             +  +            +               +   L+ +  R         +      
Sbjct: 469  AVFVSGIIALTLSPMMCSKMLKANAEPSKFEQKVHHVLDGMTNRYEKMLTTVMAHRPVII 528

Query: 367  AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            A    +  ++  +          ++    + ++ T    + L       S    +L    
Sbjct: 529  AFAIIVFAVLPILFKFIPSELAPSEDKGVVVLMGTAPSNANLDYIEHTMSDVNKILSDQP 588

Query: 427  AVDSNILVNERIREENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
             V+   + N           +      +   S+A  T     + + +  + +  F    +
Sbjct: 589  EVEYAQVFNGVPNSNQAFGLATLKPWSERETSQADVTTRVGGLISQVPGMSVTAFQMPEL 648

Query: 486  RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
             G    + +  +I+   +   +  +   I+       + +            + I   + 
Sbjct: 649  PGAGSGLPIQFVITTPNSFESLFTIASDILSDVSTSPMFVYSDLDLNYDSATMKISIDKD 708

Query: 546  RFWGVGISILFSICSICLLFTHGLNYGIDFKGGI---QLGVLANRPVDLSVVRSNLESLQ 602
            +    G+++     ++  +   G    ID  G        V     ++   + +      
Sbjct: 709  KAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNNYYVRSV 768

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI----------- 651
             G           + +   +  P  +   +  +  V      +                 
Sbjct: 769  DGKAVPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPTPGVAMGDAINWFEDTAQNKLPS 828

Query: 652  -QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
              N + +G           +     ++   + + + I+F+     L  + ++ L +   L
Sbjct: 829  GYNHDYMGEARQFVTEGSALYATFGLALAIIFLVLAIQFESVRDPLVIMVSVPLAVCGAL 888

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               A      N+ +   ++TL+G      +++ +  ++        +S  D + ++    
Sbjct: 889  IALAWGTASMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAVTEAAKVR 946

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++ +
Sbjct: 947  LRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLAE 1006

Query: 826  WRAK 829
                
Sbjct: 1007 QHKP 1010


>gi|84624152|ref|YP_451524.1| transport protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84368092|dbj|BAE69250.1| transport protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 1163

 Score =  150 bits (379), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/568 (12%), Positives = 152/568 (26%), Gaps = 49/568 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 31  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 76

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 77  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 136

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ +  +L+        I+        +  +    I                ++
Sbjct: 137 L--SLPLETRPPVLLRFNPSTEPIMRLALLPKQAPASDTDAIRQLTGLRRYADEDLKKKL 194

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 195 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDNVITRLKEENVNISGGRLEEGSQR 254

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 255 YLVRTVNQFVDLDEIRNMLVTTQSSSGSAAEAAMQQMYAIAASTGSQAALAAAAEVQSTS 314

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              S    G           + +          L      Q     +   +   T     
Sbjct: 315 SSSSSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKEAVQLAIYKEGDANTVSTAAALR 374

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 375 KRLQQLKATVPDDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 434

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG  L + S+ G+ L  GL VD +I+V E I +   +  SV 
Sbjct: 435 ISLSLPVSIITTFFFMGQLGLGLNVMSLGGLTLATGLVVDDSIVVLESIAKARERGLSVL 494

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVL-FFFGGGAVRGFAITMGLSILISMFTAISIVR 508
            +   G       +  S +T +   + L F  G          + ++I I++  ++ +  
Sbjct: 495 DAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAIAISLVVSM 554

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            ++  +   K    +             
Sbjct: 555 TLIPMLSSLKGAPPMAFPEEPSHPQWQP 582



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 59/189 (31%), Gaps = 6/189 (3%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           + + +++    +     I   E     I   +       VI 
Sbjct: 355 QLAIYKEGDANTVSTAAALRKRLQQLKATVPDDVEITTIEDQSHFIEHAISDVKKDAVIG 414

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 415 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLGLNVMSLGGLTLATGLVVD 474

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +S  D       E     + +++      LP+       G 
Sbjct: 475 DSIVVLESI---AKARERGLSVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 531

Query: 793 VIGSFAIPM 801
           +    A+ +
Sbjct: 532 LFRDQALTV 540


>gi|28572648|ref|NP_789428.1| preprotein translocase subunit SecD [Tropheryma whipplei TW08/27]
 gi|28410780|emb|CAD67166.1| protein-export membrane protein SecD [Tropheryma whipplei TW08/27]
          Length = 540

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 110/493 (22%), Positives = 201/493 (40%), Gaps = 24/493 (4%)

Query: 45  SLGLDLRGGSHLVLEVDE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLS 101
            L LDL GG+ +VL       +  +  LQ     +R+ +   GI    +    +  I++S
Sbjct: 24  KLALDLEGGTQIVLRAKAAEKEITSEQLQQAVAIIRNRVDSSGISEAEISVQGSTNISVS 83

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                  + + D++    +     +     K +      +  +   S  +      +A  
Sbjct: 84  IP-GTPSQEVYDRIRSSSKMDMRAVL--LTKPIQHAAMNEGSTHAGSTASAAIGDKNATR 140

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
            S +    R +       T   + S R              R    +            +
Sbjct: 141 GSPKSSEHRKNIPKTPHDTSGMIPSPRPKNGSDMAWITKYWRDRFDSHNCKDNAGDSTPD 200

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA-----NFDPKTHKPVVDISFDE 276
           +          + D  G    +   VE+SG  ++ A A     +F   +    V I+F+ 
Sbjct: 201 NLP------LVVCDQYGTTKYLLGPVEVSGTDISRAVADPVSSHFAGASIGWGVTITFNA 254

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP---SGKAQISGNFTIETAGILAA 333
            G  +F +V+   I           VL   VI        +   QI+GNF   TA  LA+
Sbjct: 255 HGGEKFKDVSNRLISLAAPRNQFAAVLDGVVITAPEVRGVTSNPQITGNFNQTTATALAS 314

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
            L  GSLP+   +    N+ A LGS  +  G  A + G++L+V++ +  Y   GL+   S
Sbjct: 315 QLSFGSLPVSFEVQSSENISATLGSSQLQSGILAGILGMILVVVYSLFQYRLLGLLTVSS 374

Query: 394 IFLNVILTLALLSLLGAT----LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           +  + I+T  +++ L       L+L  +AG+++ IG+  DS I+  ER+++E R+ + + 
Sbjct: 375 LICSAIVTYLVITFLSWQNGYRLSLAGVAGLIVAIGITADSFIVYFERVKDELREGRDIV 434

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++D G+SRA  TI  S+    +A +VLF    G+V+GFA T+GL+ L+ +   +     
Sbjct: 435 RAVDRGWSRALRTICASDAVNFLAAIVLFLVAVGSVKGFAFTLGLTTLVDLLVVVFFTHP 494

Query: 510 MMIFIIRYKKMKS 522
           ++ ++        
Sbjct: 495 VLQYLSHSSFFTR 507



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 79/206 (38%), Gaps = 8/206 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G+    T      +     +     +Q++E +   +    ++ GI+  I+  I ++
Sbjct: 298 PQITGNFNQTTATALASQLSFGSLPVSFEVQSSENISATLGSSQLQSGILAGILGMILVV 357

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAVAAVLTLIGYSVNDK 737
           +Y   +++    L  +++LI     T           G   +L  VA ++  IG + +  
Sbjct: 358 VYSLFQYRLL-GLLTVSSLICSAIVTYLVITFLSWQNGYRLSLAGVAGLIVAIGITADSF 416

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +V ++R++  ++           +D+  +  L     +    F++ + + +     +  F
Sbjct: 417 IVYFERVKDELRE---GRDIVRAVDRGWSRALRTICASDAVNFLAAIVLFLVAVGSVKGF 473

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFI 823
           A  +    +V     +F   P+L ++
Sbjct: 474 AFTLGLTTLVDLLVVVFFTHPVLQYL 499


>gi|116621767|ref|YP_823923.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116224929|gb|ABJ83638.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1026

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 63/612 (10%), Positives = 162/612 (26%), Gaps = 46/612 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G +           +   PS                  + +    
Sbjct: 10  RPVMTALICFAILLFGTIA-----FRALPVAALPSVDYPT-------------IQVSASV 51

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +        +   S +        +       IT+ F+  R  ++ A  +   
Sbjct: 52  PGASPETMASTVATPLEREFSTIAGVQSMNSTNTLSSTAITVQFSLDRKIDDAAQDIQAA 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L     +             V     +D       + +         +I +  
Sbjct: 112 IARAGGRLPPSMPRPPTYNKVNPAEQPVFY-LALDSSTLPMYQVNEYADTLLAQRISMVT 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +  + DP +L        ++       N +             +  
Sbjct: 171 GVSRVQVFGAQKYAVRVQVDPDKLAARGIGIDEVQRAVANSNTNLPTGRLDGDKQAFTIE 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           +   +                            I                N+   +    
Sbjct: 231 SSGSLATA--------------------PAYRPIIVAWRNGTAVRLEELGNVIDSVDNDK 270

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                            +   +    ++    L    R    P     +      +  GS
Sbjct: 271 IMAWYDNKRAVILAIQRQPGTNTVDVVDGVKKLLPQFRKEIPPAVNLSIAFDASQSIRGS 330

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               + T  +   +V++V+F+ +      L+   ++  +++ T A++ LLG +L   S+ 
Sbjct: 331 IRDVEFTLVLTICVVVLVIFLFLRNISATLIPGCAVPFSIVGTFAVMYLLGYSLNNLSLM 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + L +G  VD  I++ E I       +S F +          TI     + +   + + 
Sbjct: 391 ALTLSVGFVVDDAIVMLENIVRHMEMGESRFTAAVNASREIGFTILSMTFSLVAVFIPVL 450

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F     G  +  F++T+ +SILIS F ++++   +    ++++  +       +      
Sbjct: 451 FMSGIVGRLLHEFSVTIVVSILISGFVSLTLTPMLGSRFLKHQSEERHGRMYRALESGFN 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                  +  R       +  ++  + L  T  L   +                 L+   
Sbjct: 511 GMQNWYEVTLRVALRFRVVTLAVAILMLFGTVYLFVTMPTGFIPSQDSGFMFAGTLAPQD 570

Query: 596 SNLESLQIGDIS 607
           ++ + ++  + +
Sbjct: 571 ASFDWVKNHNHA 582



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 70/216 (32%), Gaps = 10/216 (4%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           V +++ +   EI P   +         I   +       V+   +
Sbjct: 285 IQRQPGTNTVDVVDGVKKLLPQFRKEIPPAVNLSIAFDASQSIRGSIRDVEFTLVLTICV 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +L+           L     +   I  T     L G   N  ++ A+   +G+ V+D +
Sbjct: 345 VVLVIFLFLRNISATLIPGCAVPFSIVGTFAVMYLLGYSLNNLSLMALTLSVGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +   ++      S       +  E     +  + +     +P+    G V   + 
Sbjct: 405 VMLENI---VRHMEMGESRFTAAVNASREIGFTILSMTFSLVAVFIPVLFMSGIVGRLLH 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            F++ +   I+++   S+ +       +     K+ 
Sbjct: 462 EFSVTIVVSILISGFVSLTLTP----MLGSRFLKHQ 493



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 61/153 (39%), Gaps = 9/153 (5%)

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            IYI +      +   +  ++ L   +   L    +F  + +L A   ++ L G    + +
Sbjct: 862  IYIVLGVLYESFIHPITILSGLPSAVFGALLTLVIFHKQLDLYAFVGIIMLFGVVKKNAI 921

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D     +       S  D I +         + T++AA    LP+A+    G     
Sbjct: 922  MMIDFA---IDSQGKGNSAYDSIWQGCLLRFRPIMMTTVAALFGTLPIALGYGEGADARQ 978

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               + +  G+VV+   +++I   I L++ +++ 
Sbjct: 979  PLGLAVVGGLVVSQFLTLYITPVIYLYLENFQE 1011


>gi|331014326|gb|EGH94382.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 1035

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/589 (11%), Positives = 165/589 (28%), Gaps = 44/589 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I  +G +           +   P+      +             L   
Sbjct: 9   RRPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q   +I L F  +R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSLGSIAGVNTMTSNSSQGSTRIILQFDLNRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q   +   +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAITNANVRRPKGFVEDDQHNWQVQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 +   +    +  
Sbjct: 234 QLESAKD--------------------YAPLIIRYQDGATLRLKDVAKVSDAVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         LRA         +          +   
Sbjct: 274 FYNNDRAVLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSRFF 532
           G      R F+IT+ +SI++S+  ++++   +    ++          +        R  
Sbjct: 454 GLVESLFREFSITLSVSIVVSLIVSLTLTPMLCARWLKPHVAEKDNAFQRWSERVNDRMV 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              D      +R R   V   ++  I ++ L       +      G  +
Sbjct: 514 AAYDRSLGWVLRHRRLTVLSLLVTVIVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 96/259 (37%), Gaps = 9/259 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  QDPVTLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   S I +             +     ++ S +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPSDIISKMAGTANAFASTQKGQPWMILGSLLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLEREQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++  + I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPEESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAK 829
             +++    + L++   R +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHR 1018


>gi|240139068|ref|YP_002963543.1| multidrug efflux protein, subunit B; RND efflux transporter
           [Methylobacterium extorquens AM1]
 gi|240009040|gb|ACS40266.1| multidrug efflux protein, subunit B; RND efflux transporter
           [Methylobacterium extorquens AM1]
          Length = 1045

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 61/515 (11%), Positives = 129/515 (25%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I  +G +  L   +       +P+                         
Sbjct: 10  RPVATTLSMLAILIVGAVSYLNLPVSALPAVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F      +     V   +   
Sbjct: 56  PEVMTSAVTAPLERQFGQMANLNQMSSQSSAGASVITLQFNLDIPLDIAEQSVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPTDLPAPPIYAKVNPADAPVLT-LALTSATIPLTQVRDLAETRLAQKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +   +         +       N +             +      
Sbjct: 175 VSMGGGQRPAVRVRFNSLAMAAYGLNIDDLRTTIANLNVNTPKGNIDGPTQSYAINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V D                                            +         G  
Sbjct: 235 VRDPAV--------------------YASAIIAYRNGAPVHLTDVAEVVDGAENTRLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T++    L   L+A         +          S    
Sbjct: 275 ADRTPAVILNIQRQPGANVIDTVDRIKRLLPQLQATMPASVSVAILTDRTTTIRASVHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V+F+ +      L+   S+ L++I  LA +   G +L   S+  + +
Sbjct: 335 QFELMLAIGLVVMVIFLFLRSFSATLIPSLSVPLSLIGALAAMDAWGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  + F +   G      TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVVIENIARHVEEGDNPFEAALKGSREIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FAIT+  +I+IS   ++++V  +   +
Sbjct: 455 VVGRLFREFAITLAATIVISAVVSLTLVPMLCARL 489



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 66/152 (43%), Gaps = 7/152 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + M+I++++R  +   L    ++ L +   L     +G   +  ++ A+    
Sbjct: 338 LMLAIGLVVMVIFLFLR-SFSATLIPSLSVPLSLIGALAAMDAWGFSLDNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +      +  +   K   E     +  +++    ++P+   G
Sbjct: 397 GFVVDDAIVVIENI---ARHVEEGDNPFEAALKGSREIGFTIISLTVSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              G +   FAI +A  IV++A  S+ +   +
Sbjct: 454 DVVGRLFREFAITLAATIVISAVVSLTLVPML 485



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 76/197 (38%), Gaps = 8/197 (4%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            + ++ ++    +I   ++               +   +  V  + I + I + + ++ + 
Sbjct: 830  QAVDALEAARKDINLPASFNVVPQGSVFAFESALSNELFLVCAAIITVYIVLGVLYESFI 889

Query: 693  ALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                I + +    I   LG    FG+  ++ A+  ++ LIG    + +++ D        
Sbjct: 890  HPITILSTLPSAGIGALLGLM-WFGLSLDIIAIIGIVLLIGIVKKNAIMMID--FALQAE 946

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                 + RD I ++        + T++AA  + +PM V    G  +     I +A G++V
Sbjct: 947  REEGKAPRDAIYEACLLRFRPILMTTLAALFAAVPMIVGSGVGSELRQPLGIVIAGGLIV 1006

Query: 808  AASSSIFIAAPILLFIY 824
            +   ++F    I L   
Sbjct: 1007 SQVLTLFTTPVIYLAFD 1023


>gi|107022274|ref|YP_620601.1| acriflavin resistance protein [Burkholderia cenocepacia AU 1054]
 gi|116689219|ref|YP_834842.1| acriflavin resistance protein [Burkholderia cenocepacia HI2424]
 gi|105892463|gb|ABF75628.1| acriflavin resistance protein [Burkholderia cenocepacia AU 1054]
 gi|116647308|gb|ABK07949.1| acriflavin resistance protein [Burkholderia cenocepacia HI2424]
          Length = 1039

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 80/676 (11%), Positives = 188/676 (27%), Gaps = 45/676 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAVKSKTLPLTQVQDLADTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L +       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAKYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKNGRPVMLTDVATVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +          +   +   T++        L+          +          +    
Sbjct: 275 VNSDPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVEIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ + G +L   S+  + +
Sbjct: 335 QFELLLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGESGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  +   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMLCAKLLRHSPPPESHRFEARVHRAIDWVIA 514

Query: 540 -------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +   + ++  ++     +     G IQ    A + +   
Sbjct: 515 RYAVALEWVLNRQRSTLVVALLTLGLTALLYVYVPKGFFPAQDTGVIQAITQAPQSISYG 574

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    ++L    +   N D   +F+         +  +  +    + + TE        
Sbjct: 575 AMAERQQTLAAAILKDPNVDSLTSFIGVDGSNITLNSGRMLINLKARDERTETAAQIIRD 634

Query: 653 NTEIVGPKISRELIRK 668
             + V       L  +
Sbjct: 635 LQQRVSNITGISLFMQ 650



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 56/149 (37%), Gaps = 6/149 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    + G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGESGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A  IV++A  S+ +   +   +       
Sbjct: 468 AVTIVISAIVSLTLVPMLCAKLLRHSPPP 496



 Score = 41.6 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDSLARR 1019


>gi|307132021|ref|YP_003884037.1| acriflavin resistance plasma membrane protein [Dickeya dadantii
           3937]
 gi|306529550|gb|ADM99480.1| Acriflavin resistance plasma membrane protein [Dickeya dadantii
           3937]
          Length = 1046

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 69/652 (10%), Positives = 167/652 (25%), Gaps = 45/652 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 25  RPIATTLLMIAILLAGIV-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 70

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +   +     V   +   
Sbjct: 71  PDVMTSAVTAPLEHQFGSMSGLKQMSSQSSGGSSVITLQFQLTLPLDVAEQDVQAAINAA 130

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D       +        +++   +        +    I  +   +I   E    
Sbjct: 131 TNLLPGDLPFPPTYSKVNPADPPIMT-LAVTSTALPLTQVQDMIETRIAQKIAQVEGVGL 189

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     ++  +       N +     F              
Sbjct: 190 VTLAGGQRPSVRVKLNPGALAAYGLSSETVRTAITAANVNTPKGSFDGPA---------- 239

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +          
Sbjct: 240 ----------RAVTLSANDQMRSLDDYRQLIITWKNNAPVRLQDVATVEQAAENTYLAAW 289

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    L   L+A         +          S    
Sbjct: 290 ANQNQAIVLNIQRQPGANVIATADHIRSLLPTLKASLPKSVDVALLTDRTTTIRASVDDV 349

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 350 QFELILAIALVVMVIYLFLRNAVATLIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTI 409

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 410 ATGFVVDDAIVVIENIARYIEKGEKPLQAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 469

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK----KMKSIDINPLSRFFLIP 535
             G   R FA+T+ +SILIS   ++++   M   ++ +     + +    +     ++I 
Sbjct: 470 IIGRLFREFAVTLAVSILISAVVSLTLTPMMCARLLSHHSLSQQNRFTRASEKFFDWVIA 529

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                         + +S+  S   + +L    +  G        +       V  S   
Sbjct: 530 WYGRGLTRVLSHPWITLSVALSTLVLTILLYIVIPKGFFPIQDNGI---IQGTVQASQTI 586

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           S    +            +        +   D    +     ++  +  +  
Sbjct: 587 SFTGMVDKQQQVTSLIMQDPAVESVSSFIGVDGTNPSLNSGRLQINLKPLDE 638



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 82/248 (33%), Gaps = 13/248 (5%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           I +K    + +     V+ +   + L +    + +       +     +           
Sbjct: 261 ITWKNNAPVRLQDVATVEQAAENTYLAAWANQNQAIVLNIQRQPGANVIATADHIRSLLP 320

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +   + K +   +              +  ELI      + I+ + M+IY+++R     
Sbjct: 321 TLKASLPKSVDVALLTDRTTTIRASVDDVQFELI------LAIALVVMVIYLFLR-NAVA 373

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + L +  T       G   N   + A+    G+ V+D +VV + +    +   
Sbjct: 374 TLIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTIATGFVVDDAIVVIENI---ARYIE 430

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                     K   E     +  + +    ++P+   G   G +   FA+ +A  I+++A
Sbjct: 431 KGEKPLQAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIIGRLFREFAVTLAVSILISA 490

Query: 810 SSSIFIAA 817
             S+ +  
Sbjct: 491 VVSLTLTP 498



 Score = 40.8 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 96/267 (35%), Gaps = 10/267 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               + L   H  + G+     I+L   +   V LS + S  E      I+  +       
Sbjct: 765  QYRVVLEQRHDSSNGLAALDDIRLINSSGGVVPLSSIASVEERQGPLSINHIDQFPSTTI 824

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
               +        A   + E  ++       ++  Q + +         +   I  VI + 
Sbjct: 825  SFNVAPGYALGDAVKAIQETQQQMQLPSDIITRFQGSTLAFQSA----LTSTIWLVIAAV 880

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +AM I + + ++ +   +  ++TL       L    + G + N+ A+  ++ LIG    +
Sbjct: 881  VAMYIVLGVLYESFIHPVTILSTLPTAGVGALLALMIAGSDLNIIAIIGIILLIGIVKKN 940

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ D            ++    I ++        + T+MAA +S +P+      G  +
Sbjct: 941  AIMMID--FALAAEREQGMTPYQAIYQACLLRFRPILMTTMAALLSAVPLMFSTGVGAEL 998

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPIL 820
                 I M  G+V++   ++F    I 
Sbjct: 999  RRPLGICMVGGLVMSQVLTLFTTPVIY 1025


>gi|290474152|ref|YP_003467029.1| acriflavine resistance protein [Xenorhabdus bovienii SS-2004]
 gi|289173462|emb|CBJ80241.1| acriflavine resistance protein [Xenorhabdus bovienii SS-2004]
          Length = 1027

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/668 (11%), Positives = 189/668 (28%), Gaps = 44/668 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++++  +   GL   L   +  + +  FP                   +     
Sbjct: 11  RKPIPTIVIFLALTIAGLFSFLKLPINANPVINFPVVT--------------VTVTQSGS 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S L        ++    +   + F          + +   +  
Sbjct: 57  SPSELENAVTQPIERAVSGLPGIRHINSTITDGVSITIIEFDIKIDPNVATNDIREQITQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L     + L+     +  +I+           +  + S  +  +   ++ +     
Sbjct: 117 IRSELPQSIDEPLISRIDVEGSAILNYAVQSKD--KNLTDLSWFVDDKLSKKLLMVPGVQ 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E DP ++  L  + A ++   +                     N  
Sbjct: 175 KITRLGGTNKEILIEPDPIKMAALKISVADINQLLL--------------------QNNV 214

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +     +             +  +                 I       +   
Sbjct: 215 NIPGGKMVVAGQDHTIRILGAKNEIDYLHQLKLPLANDNWIKLGDIATIRDSHKETITIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L   ++       +A+ S +  +E   + A  +     P     +   NV   + S + 
Sbjct: 275 RLNNEIVVG-FAVFRAKGSSDTEVEKGVVRALQMAGEEYPDVSIKLVSSNVKYTVASYNS 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F  +   +  L+A  ++ L+++    +L L G TL   ++  + 
Sbjct: 334 TMQTLIEGAILTVIVVFFFLKSWRATLIAAIALPLSILPAFFILHLFGYTLNSITLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I +   + +  + +           I    IT +   + + F G
Sbjct: 394 LVIGILVDDAIVEIENIEKYIERGERPYIAAIKASDAIGFAIVAITITIVAVFLPVSFIG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F IT+  ++L S+  A  +   M  ++++ KK    D     ++      I
Sbjct: 454 GFIGKYFVPFGITVSAAVLSSLLVARLVTPLMSAYLLQPKKHPKTDKTETPKWIKKYLTI 513

Query: 539 AIQFMRARFWG-VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + ++ R    +   +        +                 + V A      +     
Sbjct: 514 LEKTLKFRKTASLLAIVFLLGSLALVALLPSGFMPKADISITTIEVEAPPGTQAAQSDET 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+ +       Q      +                    ++   +       + +  E  
Sbjct: 574 LQKII---KKLQGRPEIIDIFSVAGVDGSSGEISQNRSNIIINLVPTGERDWSQKEFEQS 630

Query: 658 GPKISREL 665
              I  E+
Sbjct: 631 LIPILNEI 638



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 80/247 (32%), Gaps = 1/247 (0%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +  + L  + +  +S +      +  +         + +        + +    +   E 
Sbjct: 252 DNWIKLGDIATIRDSHKETITIARLNNEIVVGFAVFRAKGSSDTEVEKGVVRALQMAGEE 311

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
            P  +I+                    +  + + +++  +    W   L A   L L I 
Sbjct: 312 YPDVSIKLVSSNVKYTVASYNSTMQTLIEGAILTVIVVFFFLKSWRATLIAAIALPLSIL 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  LFG   N   + A+  +IG  V+D +V  + + K ++              +I
Sbjct: 372 PAFFILHLFGYTLNSITLLALTLVIGILVDDAIVEIENIEKYIERGERPYIAAIKASDAI 431

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              +     T +A F+ V  +  + G     F I ++  ++ +   +  +  P++     
Sbjct: 432 GFAIVAITITIVAVFLPVSFIGGFIGKYFVPFGITVSAAVLSSLLVARLV-TPLMSAYLL 490

Query: 826 WRAKNAR 832
              K+ +
Sbjct: 491 QPKKHPK 497



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 67/158 (42%), Gaps = 5/158 (3%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
           +  E    +   E+  +    + +S + +L  + I FK +   +  +  L   I   +  
Sbjct: 830 KRVEYGEVEYMNEMFDRFTTTITLSIMMVLAILIILFKDFLQPMTILIALPFAIGGAIIA 889

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             ++G   +L  +  +L L+G    + +++ + + +      T +   + I ++  E + 
Sbjct: 890 LLIYGAAIDLPVIIGILMLMGIVSKNSILLVEFILE---KSRTGMPRNEAIIQAGRERVR 946

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             + T++A    ++P+ +  G+   SF  PMA  ++  
Sbjct: 947 PIIMTTIAMIAGMIPLVITSGAD-ASFRAPMAISVIGG 983


>gi|288962523|ref|YP_003452818.1| RND superfamily, multidrug transport protein [Azospirillum sp.
           B510]
 gi|288914789|dbj|BAI76274.1| RND superfamily, multidrug transport protein [Azospirillum sp.
           B510]
          Length = 1043

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 65/580 (11%), Positives = 158/580 (27%), Gaps = 38/580 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G +           +   P       I             L   
Sbjct: 23  RRPVGTALLMVGLMILGAVA-----YRFLPVAPLPQVEFPTII---------VTASLPGA 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        + +     + + F  +R  E  +  V   +  
Sbjct: 69  SPETMAASVATPLERRLSRIAGVSEMTSNSKLGSTVVVVQFDLNRDVEAASRDVQAAINA 128

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D      +       + V++   +        E           ++   E   
Sbjct: 129 AGGDLPADLPSPPRMRRINPADAPVMT-LAMTSTTLAPAELYNLADSVIGQRLSQIEGVA 187

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   +      +    + +    +  +   +       N +     F       + G   
Sbjct: 188 QVTINGAEKTAVRVRVNATAAANMGVSLDAIRTVISQANANGAKGSFDGTHESWAIGASD 247

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +   E            ++ +         
Sbjct: 248 QL--------------------FDADAYRRLIVTERNGAVVRLGDVADVIEAPENRYTAA 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        LR    P     V          S   
Sbjct: 288 WQDGHRAILINIQKQPGSNVVDTVDRIRAELPTLRGWMPPGVSLSVRTDRTPTIRASIDD 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A+   LV++V+ + +      ++   S+ L++  T  ++ ++G +L   S+  + 
Sbjct: 348 VQKTLAVTVALVVMVMALFLRRLWATVIPAASVPLSLAGTCGVMWIVGYSLDNFSLMALT 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E I     K    F +   G  +   T+   +++ +   + + F G
Sbjct: 408 ISVGFVVDDAIVVIENIVRHIEKGARPFEAAVAGTRQVAFTVVSISLSLVAVFIPILFMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+ + ++I +S   ++++   M   ++R +  +            + D +
Sbjct: 468 GIQGRLFREFAVVLSVAIAVSAVVSLTLTPMMCAHLLRPETERGPTGRLGRALGWVGDRL 527

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                    W +       + +  ++      YG   KG 
Sbjct: 528 FGLHAGGLDWVLAHRRAMLLATAAIIGVSVWLYGQVPKGF 567



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 86/230 (37%), Gaps = 12/230 (5%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              + ++  +  +     + +  + +  Q          ++ ++ ++  +        + 
Sbjct: 272 DVADVIEAPENRYTAAWQDGHRAILINIQKQPGSNVVDTVDRIRAELPTLRGWMPPGVSL 331

Query: 656 IVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    +  +          + V ++ + M++ +++R  W   + A  ++ L +  T G 
Sbjct: 332 SVRTDRTPTIRASIDDVQKTLAVTVALVVMVMALFLRRLWATVIPA-ASVPLSLAGTCGV 390

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G   +  ++ A+   +G+ V+D +VV + +   ++         +       +   
Sbjct: 391 MWIVGYSLDNFSLMALTISVGFVVDDAIVVIENI---VRHIEKGARPFEAAVAGTRQVAF 447

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             V  S++     +P+   G   G +   FA+ ++  I V+A  S+ +  
Sbjct: 448 TVVSISLSLVAVFIPILFMGGIQGRLFREFAVVLSVAIAVSAVVSLTLTP 497



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 96/230 (41%), Gaps = 6/230 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  + IG+ +          +  L +     V+ ++  E++++   +I   ++I+   
Sbjct: 796  SAVSRVVIGNQAASIQHQSGFPVANLTFDLAPGVSLSQATELIQRAAEDIGMPASIRAGF 855

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++      + ++ + I + I + + ++     L  ++TL       L    L 
Sbjct: 856  QGDARAFQQSASSQPLLILAALITIYIVLGVLYESLIHPLTILSTLPSAGLGALIALILT 915

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G + ++ A+  ++ L+G    + +++ D   +     T  +S  + I ++        + 
Sbjct: 916  GYDLSIVALIGIILLVGIVKKNAIMMIDFALE--AERTRGLSPLEAIREAGLVRFRPIMM 973

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            T+MAA +  +P+A     GG +     I +  G++V+   +++    + L
Sbjct: 974  TTMAALLGAVPLAFDYGTGGEIRRPLGIAIIGGLLVSQMLTLYTTPVVYL 1023


>gi|251788830|ref|YP_003003551.1| multidrug efflux system subunit MdtB [Dickeya zeae Ech1591]
 gi|247537451|gb|ACT06072.1| acriflavin resistance protein [Dickeya zeae Ech1591]
          Length = 1046

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 63/545 (11%), Positives = 143/545 (26%), Gaps = 38/545 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 25  RPIATTLLMIAILLAGIV-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 70

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  S   +     V   +   
Sbjct: 71  PDVMTSAVTAPLEHQFGSMSGLKQMSSQSSGGSSVITLQFQLSLSLDVAEQDVQAAINAA 130

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D       +        +++   +        +    I  +   +I   E    
Sbjct: 131 TNLLPTDLPFPPTYSKVNPADPPIMT-LAVTSTALPLTQVQDMIETRIAQKIAQVEGVGL 189

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     ++  +       N +     F              
Sbjct: 190 VTLAGGQRPSVRVKLNPGALAAYGLSSETVRTAITAANVNTPKGSFDGPARS-------- 241

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++      +                 + +          
Sbjct: 242 ------------VTLSANDQMRSLDDYRQLIITWKNNAPVRLQDVATVEQAAENTHLAAW 289

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T +    L   L+A         +          S    
Sbjct: 290 ANQNQAIVLNIQRQPGANVIATADHIRNLLPSLKASLPKSVDVALLTDRTTTIRASVDDV 349

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      L+   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 350 QFELILAIALVVMVIYLFLRNAVATLIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTI 409

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 410 ATGFVVDDAIVVIENIARYIEKGEKPLQAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 469

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ +SILIS   ++++   M   ++ +  +   +    +        IA
Sbjct: 470 IIGRLFREFAVTLAVSILISAVVSLTLTPMMCARLLSHHSLSQQNRFTRASERFFDAVIA 529

Query: 540 IQFMR 544
                
Sbjct: 530 WYGRG 534



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 86/270 (31%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S               I +K    + +     V+ +   ++L +    + +   
Sbjct: 239 ARSVTLSANDQMRSLDDYRQLIITWKNNAPVRLQDVATVEQAAENTHLAAWANQNQAIVL 298

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +     +            +   + K +   +              +  ELI    
Sbjct: 299 NIQRQPGANVIATADHIRNLLPSLKASLPKSVDVALLTDRTTTIRASVDDVQFELI---- 354

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 355 --LAIALVVMVIYLFLR-NAVATLIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTIAT 411

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 412 GFVVDDAIVVIENI---ARYIEKGEKPLQAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 468

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 469 DIIGRLFREFAVTLAVSILISAVVSLTLTP 498



 Score = 40.8 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 43/271 (15%), Positives = 98/271 (36%), Gaps = 10/271 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               + L   H  + G+     I+L   +   V LS + +  E      I+  +       
Sbjct: 765  QYRVVLEQHHDSSNGLAALSDIRLINSSGGVVPLSSIATVEERQGPLSINHIDQFPSTTI 824

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
               +        A   + +  ++    I  ++  Q + +         +   I  V+ + 
Sbjct: 825  SFNVAPGYALGDAVKAIQQTQQQMQLPIDIITRFQGSTLAFQSA----LTSTIWLVVAAV 880

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +AM I + + ++ +   +  ++TL       L    + G + N+ A+  ++ LIG    +
Sbjct: 881  VAMYIVLGVLYESFIHPVTILSTLPTAGVGALLALMIAGSDLNIIAIIGIILLIGIVKKN 940

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +++ D            ++    I ++        + T+MAA +S +P+      G  +
Sbjct: 941  AIMMID--FALAAEREQGMAPYQAIYQACLLRFRPILMTTMAALLSAVPLMFSTGVGAEL 998

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 I M  G+V++   ++F    I L   
Sbjct: 999  RRPLGICMVGGLVMSQVLTLFTTPVIYLLFD 1029


>gi|149910803|ref|ZP_01899437.1| putative multidrug resistance protein [Moritella sp. PE36]
 gi|149806137|gb|EDM66117.1| putative multidrug resistance protein [Moritella sp. PE36]
          Length = 1042

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 75/609 (12%), Positives = 177/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +G+         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGVQAIF-----KMQVREYPDMTNTVVT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S    ++ IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSSSVLGKSTITITMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  + +   +  +T    +++    + D++ S  +  +  + R    Q+       
Sbjct: 115 VRSLLPKESEDPTVTMSTGSTTAVMYIAFSSDELSSSQV--TDYLDRVINPQLFTISGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I   L    DP ++     T  ++       N           F+  +     
Sbjct: 173 KVDMYGGIKYALRVWLDPLKMAAYDLTATEIMGVLNSNNYQSATGQAIGEFVLYNGNANT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+                      +       +         +    +  +   
Sbjct: 233 QVSSTAELE--------------------RLVVSTDKGQVIRLGDIAKVTLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          +   L           V   +  A   S   
Sbjct: 273 SANGKEAVVAAVNAAPTANPITIAADVLAILPELERNLPTNIHMNVMYDSTVAINESIKE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +V++V+ + +   +  ++   +I L++I    ++   G +  L ++  +V
Sbjct: 333 VIKTIIEAALIVIVVITLFLGSFRAVIIPIVTIPLSLIGVAMIMQSFGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENIDRHIKLGESPFRAAVIGTREIAVPVIAMTVTLGAVYAPIALMG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-----IDINPLSRFFL 533
           G      + FA+T+  ++ IS   A+++   M   I+      S     +          
Sbjct: 453 GITGALFKEFALTLAGAVFISGILALTLSPMMCSKILIANAKPSKFEQIVHAFLERMTNT 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               I+    +         I+F+   +   F        + KG + +   A    +L  
Sbjct: 513 YEKMISAVMQKRPVMIAFAIIVFAALPMLFKFIPSELAPSEDKGVMMMLGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           ++++++ + 
Sbjct: 573 IQNSMDEVN 581



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 86/257 (33%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     + + L  +                   E            + +     +  + 
Sbjct: 244 VVSTDKGQVIRLGDIAKVTLEKSHDVYRASANGKEAVVAAVNAAPTANPITIAADVLAIL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAIT 698
            ++   +P +   N          E I++ I  +I  + I +++       +   +  I 
Sbjct: 304 PELERNLPTNIHMNVMYDSTVAINESIKEVIKTIIEAALIVIVVITLFLGSFRAVIIPIV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +         FG  +NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSLIGVAMIMQSFGFSWNLMTLLAMVLAIGLVVDDAIVVLENI---DRHIKLGESPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   G++   FA+ +A  + ++   ++ +
Sbjct: 421 RAAVIGTREIAVPVIAMTVTLGAVYAPIALMGGITGALFKEFALTLAGAVFISGILALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   I    AK ++
Sbjct: 481 SPMMCSKILIANAKPSK 497



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/197 (10%), Positives = 66/197 (33%), Gaps = 8/197 (4%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             + + +                     +  + +     + +  +    +IY+ +  ++  
Sbjct: 810  AMGDAIAWFENTASSKLPKGYRYDFMGESRQFVTEGSALYMTFALALAIIYLVLAIQFES 869

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVA---AVLTLIGYSVNDKVVVYDRMRKNMK 749
            A   +  ++       G         +   +     ++TL+G      +++ +  ++   
Sbjct: 870  ARDPLVIMVSVPLAVSGALVSLAWGLSTMNIYSQVGLITLVGLITKHGILICEVAKEEQL 929

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIV 806
             +  + +  D + ++    L   + T+ A    ++P+    G      F+I +    G+ 
Sbjct: 930  HHGKNRT--DAVIEAAKVRLRPILMTTAAMIAGLIPLMYASGAGAEQRFSIGIVIVSGLA 987

Query: 807  VAASSSIFIAAPILLFI 823
            +    ++FI   I  F+
Sbjct: 988  IGTLFTLFILPVIYSFL 1004


>gi|283850925|ref|ZP_06368210.1| acriflavin resistance protein [Desulfovibrio sp. FW1012B]
 gi|283573571|gb|EFC21546.1| acriflavin resistance protein [Desulfovibrio sp. FW1012B]
          Length = 1044

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 64/521 (12%), Positives = 143/521 (27%), Gaps = 38/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   +   G +        Q  +   P                    +     
Sbjct: 10  RPVATTLIMVAVILAGAVA-----YFQLPVSALPQVDYPTIQ---------VRTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + IT+ FA S   +    +V   +   
Sbjct: 56  PDVMASAVTAPLERQFGQMPGLTQMTSASASGASVITMQFALSLSLDVAEQEVQAAINTA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     + +      + +LS   +        E       +   +I        
Sbjct: 116 FSLLPEDLPAPPVYSKVNPADAPILS-LALISETMPLTEVQDLADTRLAQKISQLSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L     T   +       N ++    F         G    
Sbjct: 175 VSVSGGQRPAVRIDANPTALAAYGITLEDVRAAVAAANVNQAKGGFDGPKQSSILGANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                       +       R         +      V     
Sbjct: 235 LLTSAE--------------------YRPLIVSYKAGRPVRLADVATVSDGAEDVRQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    +   LRA         V          S    
Sbjct: 275 VNGKPAIVLNIQRQPGANVIDVVDRVKAILPSLRASLPAAIDLSVLADRTVTIRASIEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV+ V+F+ +      L+   ++ L+++ T  ++ LLG  +   ++  + +
Sbjct: 335 QVELLLAVVLVVGVIFVFLRDLPATLIPGVAVPLSLVGTFGVMYLLGYGINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E +        +   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 STGFVVDDAIVMIENVARHVEDGATPMEAALAGAGQIGFTILSLTVSLVAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             G   R FA+T+G +IL+S   ++++   M   ++R +  
Sbjct: 455 VVGRLFREFAVTLGAAILLSAAVSLTLTPMMCARLLRDRSK 495



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + L +  T G   L G   N   + A+    G+ V+D +V+ + + 
Sbjct: 352 FLRDLPATLIPGVAVPLSLVGTFGVMYLLGYGINNLTLMALTISTGFVVDDAIVMIENV- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +      +  +       +     +  +++    ++P+   G   G +   FA+ + 
Sbjct: 411 --ARHVEDGATPMEAALAGAGQIGFTILSLTVSLVAVLIPLLFMGDVVGRLFREFAVTLG 468

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             I+++A+ S+ +   +   +   R+K+A
Sbjct: 469 AAILLSAAVSLTLTPMMCARLLRDRSKDA 497


>gi|255027768|ref|ZP_05299754.1| bifunctional preprotein translocase subunit SecD/SecF [Listeria
           monocytogenes FSL J2-003]
          Length = 337

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 85/340 (25%), Positives = 157/340 (46%), Gaps = 18/340 (5%)

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +AVD+N++  ERI+EE +  +S   + ++G   A+  I D N+T LI   VLF+FG  ++
Sbjct: 1   MAVDANVITYERIKEEIKVGRSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSI 60

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP---------- 535
           +GFA  + +SIL+S  TA+   R ++  +++   + +       +   I           
Sbjct: 61  KGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFS 120

Query: 536 --DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   F++     + I     I  I +L    LN GIDF  G +  V AN+ +  + 
Sbjct: 121 LKHFDRFDFVKHHRLFLSIFAAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQ 180

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           ++ +L+++ +               V             +     +             +
Sbjct: 181 IKKDLDTIDMPSDDIVFQGSGSKTAVVSYKGTLSQNDVAKFKNYFE------DKYKHEPS 234

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              V P + +EL + G   + ++++ +++YI +RF++Y  + AI +L+ D      FF++
Sbjct: 235 ISTVSPTVGKELAKNGFWALGVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSV 294

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             +E +LT +AAVLT+IGYS+ND +V  DR+R        
Sbjct: 295 TRLEVDLTFIAAVLTVIGYSINDTIVTADRIRDISMKMQR 334



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +V+  V+ Y+R+++ +K+     S +   +    E     +  ++   I    +  +G 
Sbjct: 1   MAVDANVITYERIKEEIKV---GRSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGT 57

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           S I  FA  +   I+V+  ++++ +  +L  +      N +
Sbjct: 58  SSIKGFATVLIISILVSFLTAVWGSRFLLGLLVKSNWLNNK 98


>gi|309390064|gb|ADO77944.1| acriflavin resistance protein [Halanaerobium praevalens DSM 2228]
          Length = 1026

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 72/648 (11%), Positives = 186/648 (28%), Gaps = 43/648 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +    ++  M+  IG +      L +  LD FP                      E  
Sbjct: 9   KRSVTTAMIILMVLLIGTVA-----LSRLSLDLFPDITFPGA---------AIITTYEGV 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + ++       +     + + + F   R  +     +   +  
Sbjct: 55  GSEEIENLITKQVESSVATVEGVKGINSTSSMGSSTVVVEFNWGRDMDFAVQDLREQVDL 114

Query: 122 VNSK-LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           ++S  L  D +  ++       + I+    + + +     E   E+  + I ++      
Sbjct: 115 ISSSVLPEDAESPMIFKFDPSMMPIMNYGVSAEGLEID--ELKEEVDDELIPRLERISGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q      +  ++       +L+        ++                           
Sbjct: 173 AQVNMQGGLEREIIVSVKRDKLKHYNLDYDTITNIVRSE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V     + G                 + +I+      +         +    A +   
Sbjct: 213 VNVSAGEVLQGDTEFLVRTVGKFSNLDEIRNINIPVGNGQI-KLSDVAEVKDGFADLSTL 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +     +        ++          +          S +
Sbjct: 272 ARTNGERSLSLSIQKQTDSNTVEVAKLVREEIDNIQNDYQNYSF-SLAMDQSEFIEDSIA 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   L +I+LF+ +   +  ++   ++ +++I T  L+      L + S+ G+
Sbjct: 331 SVSQNAVVGGLLAVIILFLFLRNIRSTIIIATAMPISIIGTFILMYFADVNLNVISLGGL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            LG+G+ VD+ ++V E I       +    +   G S     I  S IT ++  + + F 
Sbjct: 391 ALGVGMLVDNAVVVLENIYRYRSLGEGKIEAAREGSSEVGKAIVASTITTVVVFLPIVFV 450

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   +  A+T+  S++ S+  A++++  +   I      + +D +           
Sbjct: 451 EGMAGQLFKDLALTVAFSLIASLLVALTLIPMLASKI-LKVSQEELDRSKKEGRIKKLYK 509

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
            ++       W   + ++  +     L  H     +         V    PV  S+ RSN
Sbjct: 510 SSLTRALKHRWVFAVLLVVLLAGSFALVPHIGFEFMPSTDQGAFTVSYELPVGTSLKRSN 569

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             S +I     +  + E             S   + +  +  + +   
Sbjct: 570 EVSTEIESTLMEIEEVETVIANVGSGGRMSSNTSSHIGNINVQLVDSA 617



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 87/250 (34%), Gaps = 8/250 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         +  S L  L+I +   +    ++     +          T + ++  + 
Sbjct: 762  ELNIQTSSGEMIPLSRLADLEITEGPVEILRKDQERYSEITADIHGVDLGTVMGQIQSRL 821

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
                +P     + E     +       G +   ++ I + + +  +F+        + T+
Sbjct: 822  AKVELPDGYRFSYEGEFEDMQESFSSLG-MAFGLAIILIYMVMASQFESLVHPFTIMFTI 880

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L +   +    +     ++ ++  ++TL G  VN+ +V+ D +    +L        + 
Sbjct: 881  PLALIGVIFGMYITNSIVSVPSILGLITLAGIVVNNAIVMVDYIN---QLRRKGTDKIEA 937

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I  +    L   + T++   + +LP+A+    G        I +  G+  A   ++F+  
Sbjct: 938  IITAGTVRLRPIMMTALTTILGLLPIAMGIGEGSESTQPMGIVIVSGLTFATFLTLFVIP 997

Query: 818  PILLFIYDWR 827
                 + D R
Sbjct: 998  IFYSLVTDLR 1007



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 79/247 (31%), Gaps = 10/247 (4%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           N  + LS V    +         +        L   +    ++V   +++      I   
Sbjct: 250 NGQIKLSDVAEVKDGFADLSTLARTNGERSLSLSIQKQTDSNTVEVAKLVREEIDNIQND 309

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
               +          I   +       V+   +A++I           +   T + + I 
Sbjct: 310 YQNYSFSLAMDQSEFIEDSIASVSQNAVVGGLLAVIILFLFLRNIRSTIIIATAMPISII 369

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T        +  N+ ++  +   +G  V++ VVV + +    +  +      +   +  
Sbjct: 370 GTFILMYFADVNLNVISLGGLALGVGMLVDNAVVVLENI---YRYRSLGEGKIEAAREGS 426

Query: 766 NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +E     V +++   +  LP+       G +    A+ +AF ++     S+ +A  ++  
Sbjct: 427 SEVGKAIVASTITTVVVFLPIVFVEGMAGQLFKDLALTVAFSLIA----SLLVALTLIPM 482

Query: 823 IYDWRAK 829
           +     K
Sbjct: 483 LASKILK 489


>gi|254230494|ref|ZP_04923868.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1) and Heavy
           Metal Efflux (HME) families, permease protein [Vibrio
           sp. Ex25]
 gi|262392755|ref|YP_003284609.1| RND multidrug efflux transporter [Vibrio sp. Ex25]
 gi|151936983|gb|EDN55867.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1) and Heavy
           Metal Efflux (HME) families, permease protein [Vibrio
           sp. Ex25]
 gi|262336349|gb|ACY50144.1| RND multidrug efflux transporter [Vibrio sp. Ex25]
          Length = 1040

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 71/568 (12%), Positives = 167/568 (29%), Gaps = 39/568 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    ++  +               ++ IT++   +         +      
Sbjct: 55  SANLIQGFITQPLEQAVAQADNIDYMTSQSVLGKSTITVNMKLNTDPNAALADILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPAKMGALKLTATDVMSVLNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                      +                 +    +  +   
Sbjct: 233 QVSNVAELEA--------------------LVVKTGEGDVIRLGDIAKVTLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLELLPQLERNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VVKTILEAAIIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  S+ +S   A+++   M   +++  +  S     +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKANEKPSKFEQKVHHILDGMTNR 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFT 566
               ++A      + I+F+I     L  
Sbjct: 513 YANMLKAVMASRPVVIVFAIIVFASLPV 540



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +                   E            + +     +  +  ++   +
Sbjct: 251 DVIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELLPQLERNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + +  ++ +AI +L+ I +    +   +  I T+ L + 
Sbjct: 311 PSNIKMNVMYDSTIAINESIHEVVKTILEAAIIVLVVITLFLGSFRAVIIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +     K ++
Sbjct: 488 MLKANEKPSK 497



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 68/183 (37%), Gaps = 7/183 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     +  + ++ L I   L 
Sbjct: 830  YNHDYMGESRQFVTEGSALYATFGLALAIIFLVLAIQFESLRDPIVIMVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++        +S  D + ++    L
Sbjct: 890  ALAWGTASMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAVMEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++ + 
Sbjct: 948  RPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLAEK 1007

Query: 827  RAK 829
               
Sbjct: 1008 HKP 1010


>gi|291513622|emb|CBK62832.1| Cation/multidrug efflux pump [Alistipes shahii WAL 8301]
          Length = 1046

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 63/605 (10%), Positives = 170/605 (28%), Gaps = 51/605 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+  +   GL   +        +D++P              +     +    
Sbjct: 9   RKPISTILLFVGVMVFGLFSLM-----NLAVDQYPEIEIP---------QISVITMYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          +   + IT+ F         A+++   +  
Sbjct: 55  NAADIETNITRVLEDNLNTVSNLKKLTSKSQDNVSMITVEFEYGSDLNEGANEIRDVVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D     +   +   I +++     ++        +  +  + ++ +   +   
Sbjct: 115 VQSQLPDDIDYPTIFKFSTSMIPVMMLAVTAEESYPA---LNKILDDKLVNVLNRVDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    DP++L     T  ++                             
Sbjct: 172 AVSIIGAPEREVQVNVDPAKLEAYNLTVEQLGQIIAAE--------------------NV 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +       G +     A+ + K    +  +     G R         I   L       
Sbjct: 212 NIPSGTIDVGNNTFNIKADGEFKLSDEMRKVVVSNAGGRTVKLSDVAQIRDTLEKSTMDE 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      + +   ++  +    +         ++          +          +   
Sbjct: 272 RVNGQRGVRVMFQKQSGANTVNIVHEIQSRLPEIQKTLPKDVKMELIFEGSQEITDAIGS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V++V+   +   +  L+   +I +++I +   L   G+TL + S++ + 
Sbjct: 332 LSETILYAFIFVVLVVMAFLGRWRATLIICMTIPVSLICSFIYLFATGSTLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG+ VD  I+V E I     +  +   +     +  + ++  + +  +   + L    
Sbjct: 392 IAIGMVVDDAIVVLENITTHIERGSNPKEAAIYATNEVWLSVIATTLVVVAVFLPLTMVP 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR-----------YKKMKSIDINP 527
              G   R     + + + +S   AIS+   M  ++++               K ID   
Sbjct: 452 GMAGILFRELGWIVTIVVCVSTTAAISLTPMMSAYLLKLEGGQHDYKGLGVIYKPIDRAL 511

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +       R     +  +F +    L       +     G I   V   +
Sbjct: 512 EWLDGAYARSLDWVVRHRRITFFSMMSVFVVSLGLLTRVPTEFFPPSDNGRISAMVELEQ 571

Query: 588 PVDLS 592
            V + 
Sbjct: 572 NVGVD 576



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 82/241 (34%), Gaps = 7/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              + +++    +       +  ++ +Q   G  VA   V+  V+K + +      +    
Sbjct: 794  KEVGTVEEEYAAPMIERENRQRVISVQSTLGAGVALGDVVAEVEKLLADYPAPDGVDLEV 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   +        +I+  I + I +  +F+   F    + T+    T       + 
Sbjct: 854  GGTVEDQGDAFGDLGTLLILIVILVYIVMATQFESLKFPFIIMFTIPFAFTGVFLALWMT 913

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                +L A+   + L+G    + +V+ D M     L        D +       L   + 
Sbjct: 914  STPLSLIALIGAIMLVGIVTKNGIVMVDYMN---LLIERGSGVFDAVIAGGKSRLRPVLM 970

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS    + +LP+A+    G        I +  G+  +   ++FI   +   + +   +  
Sbjct: 971  TSFTTILGMLPLAIGTGAGSETWQPMGIAVIGGLTFSTILTLFIVPVLYSILVNRSQRKE 1030

Query: 832  R 832
            R
Sbjct: 1031 R 1031



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/237 (10%), Positives = 79/237 (33%), Gaps = 8/237 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +  D++ +R  LE   + +            + + Q           +   + +   
Sbjct: 250 RTVKLSDVAQIRDTLEKSTMDERVNGQRG--VRVMFQKQSGANTVNIVHEIQSRLPEIQK 307

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +     ++       +I+  +       +      +L+ +    +W   L    T+ + 
Sbjct: 308 TLPKDVKMELIFEGSQEITDAIGSLSETILYAFIFVVLVVMAFLGRWRATLIICMTIPVS 367

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  +  +    G   N+ +++++   IG  V+D +VV + +           + ++    
Sbjct: 368 LICSFIYLFATGSTLNIISLSSLSIAIGMVVDDAIVVLENI---TTHIERGSNPKEAAIY 424

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           + NE     + T++      LP+ +  G            +   + V+ +++I +  
Sbjct: 425 ATNEVWLSVIATTLVVVAVFLPLTMVPGMAGILFRELGWIVTIVVCVSTTAAISLTP 481


>gi|330971258|gb|EGH71324.1| acriflavin resistance protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 1035

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/589 (11%), Positives = 166/589 (28%), Gaps = 44/589 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I  +G +           +   P+      +             L   
Sbjct: 9   RRPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q   +I L F   R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSLGSIAGVNTMTSNSSQGTTRIILQFDLDRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q   +   +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAITGANVRRPKGFVEDDQHNWQVQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 +   +    +  
Sbjct: 234 QLETAKD--------------------YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         LRA         +          +   
Sbjct: 274 FYNNDRAVPLVVNCQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRFF 532
           G      R F+IT+ +SI++S+  ++++   +    ++ ++       +        R  
Sbjct: 454 GLVESLFREFSITLSVSIIVSLIVSLTLTPMLCARWLKPREAHGENAFQRWSERVNDRMV 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              D      MR R   +   ++  + +I L       +      G  +
Sbjct: 514 AGYDRSLGWVMRHRRLTLLSLLITVVVNIALYVVVPKTFLPQQDTGQLM 562



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           +V+   S+ +   +       R  + 
Sbjct: 472 IVSLIVSLTLTPMLCARWLKPREAHG 497



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 98/262 (37%), Gaps = 9/262 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  QDPVTLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   S I +             +     ++ + +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLEREQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++ ++ I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    + L++   R +  +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHRYNK 1021


>gi|319786979|ref|YP_004146454.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465491|gb|ADV27223.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 1159

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 71/565 (12%), Positives = 162/565 (28%), Gaps = 42/565 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                      E  
Sbjct: 20  RRRVTIAMMTLTLVLFGLIS-----LSSLKVELLPDLSYPTLT---------VRTDYEGA 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +   ++E    +K         R  Q+ + L FA     +    +V   ++ 
Sbjct: 66  APSEVETLISQPAEEALGVVKGLRKLRSISRTGQSDVVLEFAWGTDMQQAGLEVRDKMET 125

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNID-------QVISHAIEQSMEIIRQRIDQI 174
           +  +L +D K  +L+        I+    +           +   +E           ++
Sbjct: 126 L--QLPLDAKPPVLLRFNPSTQPIMRLALSAKQEPADEADAVRRLMELRRYADEDLKRKL 183

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL  +  K+       N +  G        R
Sbjct: 184 EAVSGVAAVKVGGGLEDEIQVDIDQRKLAQLGLSLDKVIERLKQENVNLSGGRLEEGTQR 243

Query: 235 DSDGNQYLVEDKVEI---------------SGIHLNGATANFDPKTHKPVVDISFDEMGA 279
                        ++               +G +     A    +    +  +  D  G 
Sbjct: 244 YLVRTVNQFSSVEQMREMLLTTAGGQSSSATGENRQLMMAILGSRDPNVIAALRGDGSGG 303

Query: 280 RRFFEV---TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
                V       + +                 +     +   +     +        +R
Sbjct: 304 SGMAPVRLKDVAEVRQGYKEREAVIRSGGMEAVELAVYKEGDANTVAAADALAQKLEQVR 363

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
                       E        +    K    +   L ++++F+ +  G    V   S+ +
Sbjct: 364 KSLPKDIELTAVEDQSTFIRHAIKDVKVDALVGGMLSILIIFLFLRDGWSTFVISLSLPV 423

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           ++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +   V  +   G 
Sbjct: 424 SIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLGVLEAAISGT 483

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
              +  +  S +T +   + L F  G A + F     +++ I++  ++ +   ++  +  
Sbjct: 484 REVFMAVVASTLTTIAVFLPLVFVEGIAGQLF-RDQAMTVAIAIAVSLVVSMTLVPMLSA 542

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQ 541
            K    ++  P             Q
Sbjct: 543 LKGRPPLEFQPEPERAPWRPQRTWQ 567



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 70/214 (32%), Gaps = 7/214 (3%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V  +       A   + + +++    +     +   E     I   +    +  ++ 
Sbjct: 337 ELAVYKEGDANTVAAADALAQKLEQVRKSLPKDIELTAVEDQSTFIRHAIKDVKVDALVG 396

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +++LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 397 GMLSILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVD 456

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +   +       E     V +++      LP+       G 
Sbjct: 457 DSIVVLESI---AKARERGLGVLEAAISGTREVFMAVVASTLTTIAVFLPLVFVEGIAGQ 513

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +    A+ +A  I V+   S+    P+L  +   
Sbjct: 514 LFRDQAMTVAIAIAVSLVVSM-TLVPMLSALKGR 546



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 75/216 (34%), Gaps = 11/216 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +            V E+ +      +         
Sbjct: 890  AAVADVVSTSGPSEIHRVDQRRVAIVSANLRGIDLGAAVAEVQQMVAQNPLGTDVGMRIG 949

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++   L R  +    ++   + + +  +F+        + T+ L +   +    L 
Sbjct: 950  GQGEELGESL-RSLLFAFGLAVFLVYLVMASQFESLLHPFVILFTIPLALVGAIAALLLT 1008

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+G  V + +++ D++    +L    ++ R+ + +     L   + 
Sbjct: 1009 GSPISVVVSIGLILLVGLVVKNAIILIDKVN---QLREAGVAKREALVEGARSRLRPIMM 1065

Query: 775  TSMAAFISVLPMAVW------GGSVIGSFAIPMAFG 804
            T++ A    +P+A+       G  V    AI +  G
Sbjct: 1066 TTLTAVFGFMPLALAPLFGSPGAEVRSPMAITVIGG 1101


>gi|298388029|ref|ZP_06997576.1| RND efflux system, inner membrane transporter CmeB [Bacteroides sp.
           1_1_14]
 gi|298259209|gb|EFI02086.1| RND efflux system, inner membrane transporter CmeB [Bacteroides sp.
           1_1_14]
          Length = 1049

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 74/623 (11%), Positives = 176/623 (28%), Gaps = 58/623 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +   IGL+      L Q  +++FP   P               + +  + 
Sbjct: 9   RPILAGVISVVFLIIGLI-----GLSQLPVEQFPEIAPPT-------------VSVSANY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +Q      L   L   E +   +         KIT+ F      +     V  
Sbjct: 51  TGANAETVQKSVVVPLEEALNGVENMMYMTSTASNTGAAKITVYFRQGTDPDMATVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  ++ +     +  +I                 +  +      ++   
Sbjct: 111 RIATAQGLLPAEVTRSGITVRKRQTSNIKALALYSPDSSFDESFLNNYLKINIEPRLSRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          L    DP ++ +     + ++      N        G        
Sbjct: 171 AGVGEVNVMGA-DYSLRIWLDPGKMAKYGLVPSDVTKILDEQNLEAPTGTLGAESKNTFQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                     +       +     G           I    +  
Sbjct: 230 YVLKYRGR----------------YEEEKDYGNLVIRSLGGGEVLRLKDVARIELGSSSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +     +  + +  +  + N  IE    + A +          +    +      
Sbjct: 274 TYIGEVNGHPGSNCMIAQTSGSNANEIIEEIDKVTADISKSLPEGMELVDLMSSKEFLDA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V+++ +   +   +   SI ++++ T A L + G +L + ++
Sbjct: 334 SIKNVVKTLIEAILLVVLVVYVFLQSLRSTFIPAISIIISLVGTFAFLYVAGFSLNMLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG  VD  I+V E ++ +  +   S + +         S +  +        + 
Sbjct: 394 FALVLVIGTVVDDAIVVVEAVQAKFDEGYKSAYQATIDAMGGITSALVTTTFVFKAVFIP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----------MKS 522
           + F G   G     F +TM +++ IS+  A+++  A+   I+                + 
Sbjct: 454 VCFMGGTTGTFYTQFGLTMAVAVAISLVNALTLSPALCALIMTPHMEAVKGEKLSFSSRF 513

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGI 579
                 +   L+    +  F   +   +  ++L   C+   +       G+   +  G I
Sbjct: 514 HMAFDSAFHRLVLKYKSGVFFMLKRKWLAGALLLVACAGLFILMKTTKTGLVPQEDMGTI 573

Query: 580 QLGVLANRPVDLSVVRSNLESLQ 602
            + V  +    L   R  ++ + 
Sbjct: 574 FIDVRTSPGNSLEETRIVMDDID 596



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/405 (9%), Positives = 116/405 (28%), Gaps = 21/405 (5%)

Query: 442  NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
              + +     ++   +  Y    D +   ++A       G G   GF I +      S+ 
Sbjct: 634  WDERKEREDGINAVINEIYRRTDDISSAQVMAFASPMIPGYGVSSGFEIYVQDQKGGSVE 693

Query: 502  TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
              +   R M+  +    ++     +  +++      +     +         +      I
Sbjct: 694  DLLKYTRQMIEALNARPEIGRASTSFDTKYPQYLVEVDAALCKRNGVSPSDVLSTLSGYI 753

Query: 562  CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
               +   +N        + +       +D   + +       G +S  +       +   
Sbjct: 754  GGNYASNMNR-FSKLYRVMVQASPEFRLDTEALNNMFVRNSDGKMSPVSQYLTLTRVYGA 812

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG--------- 672
            +     ++     +     +         +          +      G +          
Sbjct: 813  ESLTRFNLFSAISVNGAPAEGYSSGQAIEVVREVAEQTLPAGYGFEFGGMSREESSTGNT 872

Query: 673  --VIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
              ++     + IY+    +    +  +  I ++   +  +  F  +FG+E N+     ++
Sbjct: 873  TTLVFIICVVFIYLILCALYESLFIPIAVILSVPFGLAGSFLFAKMFGLENNIYLQTGLI 932

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG      +++ +   +  +     +S       +    L   + TS+     +LPM 
Sbjct: 933  MLIGLLSKTAILLTEYASERRRQ---GMSIMQAAISAAQVRLRPILMTSLTMIFGMLPMM 989

Query: 788  VWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G          +    G+++   + +FI   + +     + K
Sbjct: 990  FASGVGANGNISIGVGTVGGMLIGTVALLFIVPVLFIVFQYLQEK 1034



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                     ++I+ +  T  F  + G   N+  + A++ +IG  V+D +VV + ++   
Sbjct: 359 SLRSTFIPAISIIISLVGTFAFLYVAGFSLNMLTLFALVLVIGTVVDDAIVVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       ++       V T+       +P+   GG+       F + MA  +
Sbjct: 419 DEGYK--SAYQATIDAMGGITSALVTTTFVFKAVFIPVCFMGGTTGTFYTQFGLTMAVAV 476

Query: 806 VVAASSSIFIAAPI 819
            ++  +++ ++  +
Sbjct: 477 AISLVNALTLSPAL 490


>gi|283832505|ref|ZP_06352246.1| multidrug resistance protein MdtC [Citrobacter youngae ATCC 29220]
 gi|291072170|gb|EFE10279.1| multidrug resistance protein MdtC [Citrobacter youngae ATCC 29220]
          Length = 1026

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/607 (11%), Positives = 166/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISVAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRSAIDNANVRKPQGAIETETHRWQVQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVSDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQTLVPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFVFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++          + +      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKSSAPRAQTRKRGFGRVLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLRHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 92/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   E + + +T++   ST++ +     ++ ++ +   ++ +I +   
Sbjct: 803  TISFNLPTGASLSEATEAINRTMTQLGVPSTVRGSFAGTAQVFQDTMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGMLYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     +   + I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALEAQRNG--KLPPEEAIFQACLLRFRPIMMTTLAALFGALPLVLSAGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+VV+   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVVSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 6/217 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  T +     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQTLVPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFVFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+ +   +  ++    A  A
Sbjct: 461 REFAVTLSVAIGISLLVSLTLTPMMCGWMLKSSAPRA 497


>gi|239917787|ref|YP_002957345.1| protein-export membrane protein SecD [Micrococcus luteus NCTC 2665]
 gi|281413720|ref|ZP_06245462.1| protein-export membrane protein SecD [Micrococcus luteus NCTC 2665]
 gi|239838994|gb|ACS30791.1| protein-export membrane protein SecD [Micrococcus luteus NCTC 2665]
          Length = 620

 Score =  150 bits (378), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 123/498 (24%), Positives = 196/498 (39%), Gaps = 44/498 (8%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDE---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
           S  P     L LDL GG+ +VL  +    +      L    + +R  +   G+    +  
Sbjct: 38  SWAP----KLALDLEGGTQMVLAPETSTGESVTPEQLDQAVEIIRQRVDGSGVAEAEVAT 93

Query: 94  IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
             ++  +        E     +          +                           
Sbjct: 94  QGSQNVVVSLPGVPDEETRRLIQASADMQFRPVLQSGP-----------------GEATP 136

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
           +      +Q  +   +  D                 L+      D +  R          
Sbjct: 137 EDQRLPEDQLPKPDGEPADA-------YDPNWVTPALLAEFQATDCTAPRDPAAPPPPSD 189

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
              V    S +     V   +       ++    +I G     A A     T++ VV+I 
Sbjct: 190 RAIVACQPSAELADGAVTPAQKYILGPVVIPGT-QIKGASNGMAQAQGGVSTNQWVVNIE 248

Query: 274 FDEMGARRFFEVTRD-------NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF-TI 325
           FDE GA+ F EVT+        +  K  A++LDG V++AP  N  I +G AQISG     
Sbjct: 249 FDEEGAKTFTEVTQKLTPYPEGDPRKQFAILLDGDVISAPQSNVVITNGSAQISGPTLNE 308

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +T   LA  L  GSLPI  +I  E+ + A LG D ++ G  A + GL L+ ++    Y  
Sbjct: 309 QTTKQLAEQLNYGSLPISFSIESEQQISATLGRDQLFWGLIAGLIGLGLVAVYQFFQYRA 368

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLT----LPSIAGIVLGIGLAVDSNILVNERIREE 441
            GL+   SI +  +LT   +++LG T      L  IAG+++ IGL  DS I+  ERI++E
Sbjct: 369 LGLLTFASIIVAGVLTWLAIAILGWTDNYRLSLAGIAGLIVAIGLTADSFIVYFERIKDE 428

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R   +V  ++  G+ RA  TI  S    L+A VVL+F   G VRGFA T+GL+ +  + 
Sbjct: 429 LRAGHTVPVAVHEGWKRARRTITASKAVNLLAAVVLYFVAVGNVRGFAFTLGLTAIADLI 488

Query: 502 TAISIVRAMMIFIIRYKK 519
                   +M+ + + + 
Sbjct: 489 VVFMFTHPLMVLLAQTRF 506



 Score = 97.5 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/288 (9%), Positives = 93/288 (32%), Gaps = 12/288 (4%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
                 + +             +N   D +G      +  +           +   + D 
Sbjct: 223 QIKGASNGMAQAQGGVSTNQWVVNIEFDEEGAKTFTEVTQKLTPYPEGDPRKQFAILLDG 282

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV--PLSTIQNTEIVGPKISRE 664
              +       +     Q        +  + + +++         +I++ + +   + R+
Sbjct: 283 DVISAPQSNVVITNGSAQISGPTLNEQTTKQLAEQLNYGSLPISFSIESEQQISATLGRD 342

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE----FNL 720
            +  G++  +I    + +Y + +++    L    ++I+    T    A+ G       +L
Sbjct: 343 QLFWGLIAGLIGLGLVAVYQFFQYR-ALGLLTFASIIVAGVLTWLAIAILGWTDNYRLSL 401

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS-MAA 779
             +A ++  IG + +  +V ++R++  ++      +    + +       R++  S    
Sbjct: 402 AGIAGLIVAIGLTADSFIVYFERIKDELRA---GHTVPVAVHEGWKRA-RRTITASKAVN 457

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++ + +       +  FA  +    +           P+++ +   R
Sbjct: 458 LLAAVVLYFVAVGNVRGFAFTLGLTAIADLIVVFMFTHPLMVLLAQTR 505


>gi|332187379|ref|ZP_08389117.1| acrB/AcrD/AcrF family protein [Sphingomonas sp. S17]
 gi|332012540|gb|EGI54607.1| acrB/AcrD/AcrF family protein [Sphingomonas sp. S17]
          Length = 1068

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 59/546 (10%), Positives = 161/546 (29%), Gaps = 40/546 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+  +   G++  +     +  ++  P       +           +     
Sbjct: 12  RNPVPPIVLFVALTLAGIVSFM-----RMDVNNDPDIDFPIVV---------VVVNQPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     L+       ++ +  ++  +        +         +  
Sbjct: 58  APTELETQVTQRVEAALRNLQGVDQITSTVTEGTSQTLVQLDIGTPIDRAVSDARDAITQ 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L     +  ++     +  +         +     + S  I      ++       
Sbjct: 118 IRSMLPDGILEPQVIRVDSTDNDLASYSAVASNMTPE--QLSWYIDNNVTKELLSVPGLS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + + +  +  ++    DP +L+    T ++++    + N +  G    +     +     
Sbjct: 176 KVIRNGGVTREIRVILDPLKLQAQGLTASEVNAQLRMTNLNAAGGRAEIAGTEQAVRVLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  ++    +N                      G R         +    A      
Sbjct: 236 NARNAYDLGQTQINV--------------------RGGRTVRLADIATVRDLYAEQRSQA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +           S       A      L   +  +K  +    +V         
Sbjct: 276 AVDGRQVISFDFQRAKGASDVSVFNGAVEKLKALEKRNPEVKFVLRS-NSVKYTEQQYES 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+F+ +   +  +++  +I L+ I     + LLG TL   ++  + 
Sbjct: 335 AIHAMIEGAVLAVIVVFIFLRDWRATVISALAIPLSAIPAFWFMDLLGFTLNQMTLLALS 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A      + +   +   ++ 
Sbjct: 395 LVAGVLVDDAIVEIENIVRHMRMGKSAYQASIDAADEIGLAVLATTMAIVAVFLPVALMP 454

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +S+L+S+  A  I   +  + ++     S     L   ++     
Sbjct: 455 GVPGQYFKNFGLTVVVSVLMSLAVARMITPMIAAYFLKSAGHASHGEGRLMDAYMATLRW 514

Query: 539 AIQFMR 544
           ++++ R
Sbjct: 515 SLRYDR 520



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 43/257 (16%), Positives = 86/257 (33%), Gaps = 8/257 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G  Q+ V   R V L+ + + +  L     S    DG +      Q   G S    
Sbjct: 240 AYDLGQTQINVRGGRTVRLADI-ATVRDLYAEQRSQAAVDGRQVISFDFQRAKGASDVSV 298

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWY 691
               + K K  E               K + +     I  +I  + +A+++       W 
Sbjct: 299 FNGAVEKLKALEKRNPEVKFVLRSNSVKYTEQQYESAIHAMIEGAVLAVIVVFIFLRDWR 358

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             + +   + L       F  L G   N   + A+  + G  V+D +V  + +   ++  
Sbjct: 359 ATVISALAIPLSAIPAFWFMDLLGFTLNQMTLLALSLVAGVLVDDAIVEIENI---VRHM 415

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
               S       + +E     + T+MA     LP+A+  G       +F + +   ++++
Sbjct: 416 RMGKSAYQASIDAADEIGLAVLATTMAIVAVFLPVALMPGVPGQYFKNFGLTVVVSVLMS 475

Query: 809 ASSSIFIAAPILLFIYD 825
            + +  I   I  +   
Sbjct: 476 LAVARMITPMIAAYFLK 492



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/229 (11%), Positives = 77/229 (33%), Gaps = 9/229 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +        SV  S +  + +G    Q     +   V +       V     ++ V    
Sbjct: 775 LPVQTQTGGSVPLSVVADIGLGAGPTQIDRVNQRRQVTVGADLAKGVISGDAMKKVHDLP 834

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLI 701
                   +    +   K+  E+++     +I +   +  + + +  ++      + +L+
Sbjct: 835 IMKNLPMGVSEMVLGQAKMQAEMMQNFFTAIISAIFMVFAVLVLLYRRFLPPFVNMASLL 894

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L     L    + G   +L     +L L+G    + +++ D   + +      +   + +
Sbjct: 895 LAPLGGLIALYVTGNPLSLPVYIGLLMLLGIVAKNSILLIDFALEEIA---KGVPVYEAV 951

Query: 762 DKSINETLGRSVYTSMAAFISVL--PMAVWGGSVIGSFAIPMAFGIVVA 808
             + ++     V T++A    ++   +++ G     S   PM   ++  
Sbjct: 952 LDAGHKRAQPIVMTTVAMVAGMVPTALSLGGDGSWRS---PMGVTVIGG 997


>gi|294507853|ref|YP_003571911.1| protein-export membrane protein secD [Salinibacter ruber M8]
 gi|294344181|emb|CBH24959.1| Protein-export membrane protein secD [Salinibacter ruber M8]
          Length = 654

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 138/500 (27%), Positives = 246/500 (49%), Gaps = 41/500 (8%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
           L+   D      +Q     +R+ + + G+   S+++  + +I +       +E + D + 
Sbjct: 154 LQGQADTA----VQNGIQVVRNRVNQYGVTEPSIQRQGDERIVVELPGVSDRERVRDLLE 209

Query: 117 LFLQGVN------SKLNVDPKKNLLV--TTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168
              Q          +L    ++ +     T E    I  +Q      +  + + S     
Sbjct: 210 SASQLTFHLMANPQQLGESVQRMIEYYEPTAEDSARIAEAQAADTAAMEASTDTSGVTEG 269

Query: 169 QRIDQIGISESTIQRLGSHRI------------------LIQLPGEQDPSRLRQLLGTTA 210
             +      E++  +     +                  +  +PG++ P   R     T+
Sbjct: 270 TELAASSGQEASGGQQQGTALTEPGESAQTGPQNSLLAAMQPMPGQEQPIIGRAFASDTS 329

Query: 211 KMSFHKVLPNNSKKGFM------FGVRFLRDSDGNQYL----VEDKVEISGIHLNGATAN 260
           +++     P+                  L   DG +      V  + E++G  +  A+  
Sbjct: 330 RVNELLQDPSVQNMLPPGIEPMWTASPVLTTEDGREAFHLLAVRAEPELTGEVVTEASVQ 389

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
           FD +T++P V I+ +  GARR+  +T  NIG  +++VLD  V ++P I   I  G+ +I+
Sbjct: 390 FDRQTNEPKVSITMNSDGARRWDRITAANIGNRVSIVLDDIVYSSPNIQSRISGGRTEIT 449

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
           G  + + A  +  +L++G L   LNI+ ER VG  LG +S   G  ++VAG +L+VLFMI
Sbjct: 450 GLESRQEAQDIVTVLQSGRLQTDLNIISERTVGPSLGEESTRAGFISVVAGFLLVVLFMI 509

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           + Y   G+VAD ++ LN+IL + +L+  GATLTLP IAGIVL IG+AVD+N+LV +R+RE
Sbjct: 510 MYYRTAGVVADIALLLNLILIMGILAGFGATLTLPGIAGIVLTIGMAVDANVLVYDRVRE 569

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E    +++  +++ G+ ++ S I D+NIT     V+L+ FG G ++GFA+T+   IL S+
Sbjct: 570 EQATGKTLRAAINAGYEQSLSAILDANITTFFVGVILYSFGVGPIKGFAVTLMAGILASL 629

Query: 501 FTAISIVRAMMIFIIRYKKM 520
           FTAI + R +  +++  ++M
Sbjct: 630 FTAIIVTRIIFDYMVEDRRM 649



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 41/201 (20%), Positives = 90/201 (44%), Gaps = 4/201 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              Q     +   +   +     I +   VGP +  E  R G + V+   + +++++ + 
Sbjct: 452 ESRQEAQDIVTVLQSGRLQTDLNIISERTVGPSLGEESTRAGFISVVAGFLLVVLFMIMY 511

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++    + A   L+L++   +G  A FG    L  +A ++  IG +V+  V+VYDR+R+ 
Sbjct: 512 YR-TAGVVADIALLLNLILIMGILAGFGATLTLPGIAGIVLTIGMAVDANVLVYDRVREE 570

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
                T  + R  I+    ++L   +  ++  F   + +  +G   I  FA+ +  GI+ 
Sbjct: 571 QA---TGKTLRAAINAGYEQSLSAILDANITTFFVGVILYSFGVGPIKGFAVTLMAGILA 627

Query: 808 AASSSIFIAAPILLFIYDWRA 828
           +  ++I +   I  ++ + R 
Sbjct: 628 SLFTAIIVTRIIFDYMVEDRR 648



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 93/240 (38%), Gaps = 34/240 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFL------------------PQSMLDRFPSAMPKN 42
           M+ N + V L      +      P+                     +    ++   +  +
Sbjct: 1   MQGNGFKVGLTIFFVGLCGFYLFPSVQNLYVSYKMNNMPEEERVEYREDNRQWLEQVDAS 60

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
            ++LGLDL+GG H+ LEV+  + +N       +  +  L+              +  +  
Sbjct: 61  SLNLGLDLQGGMHVTLEVEIGNLLNQLAVNKDEAFQQALRTAEQRAEEENVSVVEAFVEE 120

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
            ++   +         L         D  +     ++  E      Q  +      A++ 
Sbjct: 121 FEAENPDG-------RLSRYFRNQGEDITR----RSSNDE-----VQEYLQGQADTAVQN 164

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
            ++++R R++Q G++E +IQR G  RI+++LPG  D  R+R LL + ++++FH +     
Sbjct: 165 GIQVVRNRVNQYGVTEPSIQRQGDERIVVELPGVSDRERVRDLLESASQLTFHLMANPQQ 224


>gi|160882471|ref|ZP_02063474.1| hypothetical protein BACOVA_00422 [Bacteroides ovatus ATCC 8483]
 gi|299146294|ref|ZP_07039362.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_23]
 gi|156112183|gb|EDO13928.1| hypothetical protein BACOVA_00422 [Bacteroides ovatus ATCC 8483]
 gi|298516785|gb|EFI40666.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           3_1_23]
          Length = 1034

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 64/585 (10%), Positives = 158/585 (27%), Gaps = 43/585 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D I       +          +     P +
Sbjct: 135 PSQLMTLCLTSTDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAQPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSTVGQFEDIVVRANANGSIIRLKDVARVSLEASSYNTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        +           +          S      T      LV++V+++ +
Sbjct: 301 MEVAERVKEAMDEISKNFPEGLSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGVEHI 420

Query: 442 NRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSIL 497
                 S + +     +   S +  +++      V + F     G   R F +T+ +S+L
Sbjct: 421 METEHLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ-------FMRARFWGV 550
           IS   A+++   M   I++    K  +I        +                  R    
Sbjct: 481 ISTVVALTLSPVMCSLILKPDSGKKKNIVFRKINEWLGIGSNKYVAAVTRTIKHPRRVLS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              ++     +           ++ +G  ++ +       L   R
Sbjct: 541 AFGMVLIAIMLIHRIIPTSFLPVEDQGYFKIELELPEGATLERTR 585



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGV--EH 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
            + T  +S  +   K++N      + TS+      +P+  + G  G +   F + +   +
Sbjct: 420 IMETEHLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSV 479

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   ++   +P++  +
Sbjct: 480 LISTVVAL-TLSPVMCSL 496



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVWVCGLENDVYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDKGEDLVQSAIYAAKLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    I +     + +Y  ++K  +
Sbjct: 1005 IFAIVFGIILVPFFFVMVYKTKSKILK 1031


>gi|330875078|gb|EGH09227.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 1035

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 70/589 (11%), Positives = 165/589 (28%), Gaps = 44/589 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I  +G +           +   P+      +             L   
Sbjct: 9   RRPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q   +I L F  +R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSLGSIAGVNTMTSNSSQGTTRIILQFDLNRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q   +   +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAITNANVRRPKGFVEDDQHNWQVQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 +   +    +  
Sbjct: 234 QLESAED--------------------YAPLIIRYQDGATLRLKDVAKVSDAVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         LRA         +          +   
Sbjct: 274 FYNNDRAVLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSRFF 532
           G      R F+IT+ +SI++S+  ++++   +    ++          +        R  
Sbjct: 454 GLVESLFREFSITLSVSIVVSLIVSLTLTPMLCARWLKPHDAEKDNAFQRWSERVNDRMV 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              D      +R R   V   ++  I ++ L       +      G  +
Sbjct: 514 AAYDRSLGWVLRHRRLTVLSLLVTVIVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 96/259 (37%), Gaps = 9/259 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  QDPVTLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   S I +             +     ++ S +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPSDIISKMAGTANAFASTQKGQPWMILGSLLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLEREQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++  + I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPEESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAK 829
             +++    + L++   R +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHR 1018


>gi|255034774|ref|YP_003085395.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
 gi|254947530|gb|ACT92230.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
          Length = 1051

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 78/658 (11%), Positives = 187/658 (28%), Gaps = 42/658 (6%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           MI  +G+L        +  + +FP   P               +       D     ++ 
Sbjct: 1   MIVFVGILAI-----KKLPISQFPDIAPTTV---------NIFIAYPGSSADV---LVKS 43

Query: 73  YSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
               L   +        I   +    +  + + F       +   +V   +  V   L  
Sbjct: 44  TLITLEQAINGVQDMRYIATDATSAGEATLRIIFEPGTDPNDAVIRVKTRVDQVMPLLPE 103

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
             ++  ++ T  +   ++                      + I +I  ++   +      
Sbjct: 104 LVQREGVIITPIQPSMLMYVNLYSKSKTIDEKFLFNYATVKMIPEIQRTKGVARAQILGS 163

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
               +    +P R+R    +  ++       +   +    G      +   +Y++  K  
Sbjct: 164 RRYAMRVWLNPDRMRAYSISVEEVMKALGEQSIIGRPGRIGQSSGIAAQSLEYVLTYKGR 223

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
                          +  +    I                 +            L     
Sbjct: 224 -------------YSEPKEYEDIIIRANSEGESIHLKDIAKVELGSEFFDIYSNLDGRAS 270

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              +       + +  I+       +++A   P     +          S      T   
Sbjct: 271 AAIVLRQNYGSNASDVIKEVKEKLDVMKASFPPGMDYKISYDVSQFLDASIEQVIHTLRD 330

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              LV IV+F+ +   +  L+   ++ ++++    ++   G ++ L ++  +VL IG+ V
Sbjct: 331 AFILVAIVVFIFLGDWRSTLIPILAVPVSLVGAFFVIQAFGLSINLITLFALVLAIGIVV 390

Query: 429 DSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG--- 483
           D  I+V E +  +     + S F ++          I       +   + + F  G    
Sbjct: 391 DDAIVVVEAVHAKMEEEPHLSPFNAVRKVLGEISGAIIAITAVMVSVFLPISFMSGPVGT 450

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
             R F+ITM  SI+IS   A+++   +   +++         N L+R     D     F 
Sbjct: 451 FYRQFSITMASSIVISAIIALTLTPVLCAIMLKNHHGHERKKNVLTRAL---DSFNRGFD 507

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           +     V +  L     +      GL     +     +        D S + + +++   
Sbjct: 508 KMTGKYVWLLKLIVSRRVVTFGVLGLFCAGIWYENSVVPAGFIPNEDQSTIYAIIQTPPG 567

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
             +   N    +   +  + +  +SV+     E++ +          I          
Sbjct: 568 STLEKTNEVSRRLQKICEEVEGIESVSSLAGYEIMTEGRGSNAGTCLINLKPWHERDH 625



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 80/246 (32%), Gaps = 12/246 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A   V  S      +     +I+  N                 + A   + E+  K + 
Sbjct: 776  EAGEMVPYSSFMKLKKGQGPNEITRFNLYNSAAIQGLPAKGYTTAEAIQAIREVAAKTLP 835

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
            +   ++    +     + +  L     V  +I    + + +  +++ +   L  + +L +
Sbjct: 836  KGYDIAFEGLSYDESIRGNESL-----VVFMIVLAFVYLVLAAQYESFIIPLAVVFSLPV 890

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +  +     L G+E N+ A   ++ L+G    + V++ +     ++      +  +   
Sbjct: 891  GVFGSFLMLNLMGLENNIYAQIGLIMLVGLLGKNAVLIVEFA---VQKRQEGATILEAAI 947

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPI 819
            +         + TS A    ++P+ V  G   I   +       G++      + I   +
Sbjct: 948  EGAKVRFRPILMTSFAFVAGLIPLIVATGAGAIGNRTIGASALGGMLFGTIFGVIIIPGL 1007

Query: 820  LLFIYD 825
                 +
Sbjct: 1008 YFIFGN 1013



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 95/277 (34%), Gaps = 22/277 (7%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                            + K    + + AN   +   ++   +     +      + +  
Sbjct: 209 IAAQSLEYVLTYKGRYSEPKEYEDIIIRANSEGESIHLKDIAKVELGSEFFDIYSNLDGR 268

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGV 673
               +  +       + V++ VK+K+  +           +   +S+ L   I + I  +
Sbjct: 269 ASAAIVLRQNYGSNASDVIKEVKEKLDVMKASFPPGMDYKISYDVSQFLDASIEQVIHTL 328

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             + I + I ++I    W   L  I  + + +         FG+  NL  + A++  IG 
Sbjct: 329 RDAFILVAIVVFIFLGDWRSTLIPILAVPVSLVGAFFVIQAFGLSINLITLFALVLAIGI 388

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA--VWG 790
            V+D +VV + +   M+     +S  + + K + E  G  +       + V       + 
Sbjct: 389 VVDDAIVVVEAVHAKMEEEPH-LSPFNAVRKVLGEISGAII---AITAVMVSVFLPISFM 444

Query: 791 GSVI----GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +      F+I MA        SSI I+A I L +
Sbjct: 445 SGPVGTFYRQFSITMA--------SSIVISAIIALTL 473


>gi|170742537|ref|YP_001771192.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
 gi|168196811|gb|ACA18758.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
          Length = 1039

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 69/546 (12%), Positives = 143/546 (26%), Gaps = 38/546 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GLL  L   L       +P+                         
Sbjct: 10  RPVATTLLMLAILLTGLLSYLNLPLSALPSVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     L              + ITL F      +    +V   +   
Sbjct: 56  PEVMTSAVTAPLERQFGQLANLNQMTSQSSAGASVITLQFNLDLSLDIATQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +L+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPVYAKVNPADAPILT-LALTSKTLALTQVRDLAETRLAQKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +   L         +       N +             +      
Sbjct: 175 VTMAGGQRPAVRVRFNSRALAAYGLNIDDLRTTIANLNVNTPKGTIDGPAQSFAINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D                         D                 ++ +       G  
Sbjct: 235 IRDPAV--------------------YRDAIIAYRNGAPVTLSAVADVVEGPENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   L+A                    S    
Sbjct: 275 MDTTPAIILNIQRQPGANVIAVVDRIKALLPQLQATLPAAIQVTPLTDRTVTIRASVHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      L+   S+ L+++  LA++ L G +L   S+  + +
Sbjct: 335 QMELLLAIALVVLVIFLFLRSLPATLIPSLSVPLSLVGALAVMDLWGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  S F +   G      TI    ++ L   + L F G 
Sbjct: 395 ATGFVVDDAIVVIENIARHVEEGASPFEAALKGSEEIGFTIISLTVSLLAVLIPLLFMGE 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+  +I+IS   ++++V  +   ++R+   ++     L+R         
Sbjct: 455 VVGRLFHEFAITLAATIVISGIVSLTLVPMLCARLLRHAPPRARREGRLARAGRWTMEAG 514

Query: 540 IQFMRA 545
           I     
Sbjct: 515 IGLYGR 520



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 56/151 (37%), Gaps = 6/151 (3%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L    ++ L +   L    L+G   +  ++ A+    G+ V+D +VV + +
Sbjct: 351 LFLRSLPATLIPSLSVPLSLVGALAVMDLWGFSLDNLSLMALTIATGFVVDDAIVVIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   K   E     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARHVEEGASPFEAALKGSEEIGFTIISLTVSLLAVLIPLLFMGEVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           A  IV++   S+ +   +   +       AR
Sbjct: 468 AATIVISGIVSLTLVPMLCARLLRHAPPRAR 498


>gi|209520843|ref|ZP_03269586.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. H160]
 gi|209498727|gb|EDZ98839.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Burkholderia sp. H160]
          Length = 1064

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 55/488 (11%), Positives = 132/488 (27%), Gaps = 30/488 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G +           ++++P   P +              V    +
Sbjct: 8   RPVFAWVIALFIVLFGAIALA-----LLPVEQYPDVAPPSL---------SISAVFSGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++         R     +IT+        +    +V   L  
Sbjct: 54  ASTLERTVTSIVEDQMNGIENFLYMSSVSRSNGTMQITVVLKPRTNLDIARTQVQDRLAR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L +  ++  L  T      ++L       V + A+          I+++   +   
Sbjct: 114 VEPRLPLQVRQVGLTVTKASSGFLMLVALQATDVTTSAVAMGNFASNNIINELRRIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L     + +++       N+   G   G + +        
Sbjct: 174 DVQLFGS-SYAMRIWLDPRKLAGFGLSASEVLQAIQEQNSQTAGGGLGDQPIAPGTEFNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +   S                +    I                 +        +  
Sbjct: 233 QIVTQSRFS-------------TPEQFREIIVHANPDGSTVRVGDVARVELGNDSYGNRL 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +   V         +  +              L+          V          S   
Sbjct: 280 TVNGKVSAGIAIQLASGANALAVARAVRQRMTELQPIFPRGVTWTVPFDTTPFITTSVQG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +V+F+ +   +  L+    + + +I T   L L G ++ + S+ G+V
Sbjct: 340 VIRTMVEALLLVTVVVFLFLQDWRATLIPTIVVPIALIGTCVGLYLFGLSINILSLFGMV 399

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + IG+  D  I+V E +      +  S   +      +       S +  +   + + FF
Sbjct: 400 VAIGILNDDAIVVVENVARIMREEGLSAPRATVKAIGQISGAAIASTLVLVAVFIPMAFF 459

Query: 481 GGGAVRGF 488
            G     +
Sbjct: 460 PGSTGGIY 467



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/148 (11%), Positives = 53/148 (35%), Gaps = 8/148 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MRKN 747
             W   +  +  +   +   +    L G+  ++     ++T+IG +  + +++ +  +++ 
Sbjct: 898  SWAIPVAVLLIIPFGVIGAVVLTMLRGLSADVYFNIGLVTIIGLAAKNAILIVEFAIKEE 957

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                +              + L   + TS+   + +LP+ +    G +   +    +   
Sbjct: 958  ----SEGKDALAAAKNGAQQRLRPILMTSVTFVLGMLPLVLATGAGAASRRAVGTGVMGS 1013

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++ A    IF      +    W ++  R
Sbjct: 1014 MLTATMFGIFFTPLFYVAARRWLSRKKR 1041



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 13/124 (10%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----M 744
            W   L     + + +  T     LFG+  N+ ++  ++  IG   +D +VV +     M
Sbjct: 361 DWRATLIPTIVVPIALIGTCVGLYLFGLSINILSLFGMVVAIGILNDDAIVVVENVARIM 420

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
           R+        +S      K+I +  G ++ +++      +PMA +    G +   F++ +
Sbjct: 421 REE------GLSAPRATVKAIGQISGAAIASTLVLVAVFIPMAFFPGSTGGIYRQFSVTL 474

Query: 802 AFGI 805
           A  I
Sbjct: 475 AVSI 478


>gi|58582265|ref|YP_201281.1| transport protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|188576248|ref|YP_001913177.1| RND superfamily protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520700|gb|ACD58645.1| RND superfamily protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 1166

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 70/568 (12%), Positives = 152/568 (26%), Gaps = 49/568 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 34  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 79

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 80  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 139

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ +  +L+        I+        +  +    I                ++
Sbjct: 140 L--SLPLETRPPVLLRFNPSTEPIMRLALLPKQAPASDTDAIRQLTGLRRYADEDLKKKL 197

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 198 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDNVITRLKEENVNISGGRLEEGSQR 257

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 258 YLVRTVNQFVDLDEIRNMLVTTQSSSGSAAEAAMQQMYAIAASTGSQAALAAAAEVQSTS 317

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              S    G           + +          L      Q     +   +   T     
Sbjct: 318 SSSSSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKEAVQLAIYKEGDANTVSTAAALR 377

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 378 KRLQQLKATVPDDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 437

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG  L + S+ G+ L  GL VD +I+V E I +   +  SV 
Sbjct: 438 ISLSLPVSIITTFFFMGQLGLGLNVMSLGGLTLATGLVVDDSIVVLESIAKARERGLSVL 497

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVL-FFFGGGAVRGFAITMGLSILISMFTAISIVR 508
            +   G       +  S +T +   + L F  G          + ++I I++  ++ +  
Sbjct: 498 DAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAIAISLVVSM 557

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            ++  +   K    +             
Sbjct: 558 TLIPMLSSLKGAPPMAFPEEPSHPQWQP 585



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/189 (14%), Positives = 59/189 (31%), Gaps = 6/189 (3%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           + + +++    +     I   E     I   +       VI 
Sbjct: 358 QLAIYKEGDANTVSTAAALRKRLQQLKATVPDDVEITTIEDQSHFIEHAISDVKKDAVIG 417

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 418 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLGLNVMSLGGLTLATGLVVD 477

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +S  D       E     + +++      LP+       G 
Sbjct: 478 DSIVVLESI---AKARERGLSVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 534

Query: 793 VIGSFAIPM 801
           +    A+ +
Sbjct: 535 LFRDQALTV 543


>gi|293373513|ref|ZP_06619865.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
 gi|292631477|gb|EFF50103.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
          Length = 1034

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 64/585 (10%), Positives = 158/585 (27%), Gaps = 43/585 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D I       +          +     P +
Sbjct: 135 PSQLMTLCLTSTDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAQPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSTVGQFEDIVVRANANGSIIRLKDVARVSLEASSYNTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        +           +          S      T      LV++V+++ +
Sbjct: 301 MEVAERVKEAMDEISKNFPEGLSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGVEHI 420

Query: 442 NRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSIL 497
                 S + +     +   S +  +++      V + F     G   R F +T+ +S+L
Sbjct: 421 METEHLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ-------FMRARFWGV 550
           IS   A+++   M   I++    K  +I        +                  R    
Sbjct: 481 ISTVVALTLSPVMCSLILKPDSGKKKNIVFRKINEWLGIGSNKYVAAVTRTIKHPRRVLS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              ++     +           ++ +G  ++ +       L   R
Sbjct: 541 AFGMVLIAIMLIHRIIPTSFLPVEDQGYFKIELELPEGATLERTR 585



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGV--EH 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
            + T  +S  +   K++N      + TS+      +P+  + G  G +   F + +   +
Sbjct: 420 IMETEHLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSV 479

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   ++   +P++  +
Sbjct: 480 LISTVVAL-TLSPVMCSL 496



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYWGVWVCGLENDVYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDKGEDLVQSAIYAAKLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    I +     + +Y  ++K  +
Sbjct: 1005 IFAIVFGIILVPFFFVMVYKTKSKILK 1031


>gi|254383610|ref|ZP_04998960.1| SecD [Streptomyces sp. Mg1]
 gi|194342505|gb|EDX23471.1| SecD [Streptomyces sp. Mg1]
          Length = 562

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 115/538 (21%), Positives = 219/538 (40%), Gaps = 37/538 (6%)

Query: 45  SLGLDLRGGSHLVLEVD-----EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKI 98
            LG+DL GG+ + L+        D      +      +   +   G+    ++    + I
Sbjct: 10  RLGIDLAGGTSITLKAKSEPGKPDAINPTNMNTAVGIIERRVNGLGVTEAEVQTQGKDHI 69

Query: 99  TLSFADSRFKENIADKV----TLFLQGVNSKLNVDPKKN----------------LLVTT 138
            ++      ++   ++V     L+ + V +  + +P                        
Sbjct: 70  IVNIPKGMNEQQAREQVGTTAQLYFRPVLAFTSGEPAAPNASPSGSPSASPSGSGAPKAG 129

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
             K+ S   + ++       A+ ++++           SES              P    
Sbjct: 130 DGKKASPSATPSSSATSQGRALSEALKAPGSPTPSPSASESKKADDNKAPTPSATPSPDA 189

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL--VEDKVEISGIHLNG 256
            +   Q        +  K     ++              G+ +   V     ++G  ++ 
Sbjct: 190 AASALQAKFAALDCTDEKQRATAAQGVKPEDPMVACGQRGDTWGKWVLGPAAVNGQDVDD 249

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL-----DGRVLTAPVINQA 311
           A    D ++ + +V + F + GA +F ++T D   K           DG+V++ P ++QA
Sbjct: 250 AKGQIDQQSGQWIVTMQFTDKGADKFAKITGDLAAKQPPQNQFAIVLDGQVISDPSVSQA 309

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           +  G AQISG FT ++A  L  ML  G+LP+         V A LG + +  G  A   G
Sbjct: 310 LTGGNAQISGGFTQQSAQDLGNMLSYGALPLSFQEDSVTTVTAALGGEQLKAGLIAGAIG 369

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLA 427
           L+L+V++++V Y     +A  S+ ++ ILT  +++LLG      L LP++ G ++ IG+ 
Sbjct: 370 LLLVVIYLLVYYRGLAFIAIVSLLVSAILTYTIMALLGKGIGFALNLPAVCGAIVAIGIT 429

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
            DS I+  ERIR+E R+ +++  +++  + RA  TI  S+  + +A  VLF    G V+G
Sbjct: 430 ADSFIVYFERIRDEIREGRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQG 489

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           FA T+GL+ L+ +       + +M  + R K   S           +     ++  R 
Sbjct: 490 FAFTLGLTTLLDVVVVFLFTKPVMTLLARTKFFSSGHPWSGLDPKRLGAKPPLRRSRR 547



 Score = 90.9 bits (223), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 54/140 (38%), Gaps = 7/140 (5%)

Query: 692 FALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            A  AI +L++    T    AL G       NL AV   +  IG + +  +V ++R+R  
Sbjct: 384 LAFIAIVSLLVSAILTYTIMALLGKGIGFALNLPAVCGAIVAIGITADSFIVYFERIRDE 443

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           ++      + R  ++++        + +   +F++   + +     +  FA  +    ++
Sbjct: 444 IRE---GRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAFTLGLTTLL 500

Query: 808 AASSSIFIAAPILLFIYDWR 827
                     P++  +   +
Sbjct: 501 DVVVVFLFTKPVMTLLARTK 520


>gi|167469122|ref|ZP_02333826.1| acriflavine resistance protein B [Yersinia pestis FV-1]
          Length = 387

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 36/411 (8%), Positives = 100/411 (24%), Gaps = 37/411 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  +     +  + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIIIMLAGALAIM-----KLPVAQYPTIAPPA-------------ITIAANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +Q      +   +        +   S      ++TL+F      +    +V  
Sbjct: 50  PGADATTVQNTVTQVIEQNMNGIDNLLYMSSSSDSSGNVQLTLTFNSGTDPDIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ     L  + ++  +         ++++    +       + +  +     D I  +
Sbjct: 110 KLQLAMPLLPQEVQQQGVSVEKSSSSFLMVAGFISEDGTMQQEDIADYVGSNIKDPISRT 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP +L     T   +     + NN       G        
Sbjct: 170 PGVGDVQLFGSQ-YAMRIWMDPHKLNNYKLTPVDVINAIKIQNNQVAAGQLGGTPPVPGQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  ++                +    +        +        +       
Sbjct: 229 ELNSSIIAQTRLTNAE-------------EFSQILLKVNTDGSQVRLKDVAIVKLGAESY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T        A L+         +           
Sbjct: 276 NIIARYNGKPAAGIGIKLATGANALNTSAAVKAELAKLQPFFPSGLTVVYPYDTTPFVKI 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           S +    T      LV +V+++ +   +  L+   ++ + ++ T A+LS  
Sbjct: 336 SINEVVKTLIEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAILSAF 386


>gi|333003423|gb|EGK22967.1| multidrug resistance protein mdtB [Shigella flexneri K-272]
 gi|333017253|gb|EGK36573.1| multidrug resistance protein mdtB [Shigella flexneri K-227]
          Length = 836

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 72/652 (11%), Positives = 170/652 (26%), Gaps = 51/652 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  +        +V   +   
Sbjct: 65  PDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVITLQFQLTLPLNVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++          A+  +   + Q  D +    +   
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMTL---------AVTSTAMPMTQVEDMVETRVAQKI 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L  T+  +                         G    
Sbjct: 176 SQISGGQRPAVRVKLNAQAIAALGLTSETVRTTIT--------------------GANVN 215

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                 + +       G  
Sbjct: 216 SAKGSLDGPSRAVTLSANDQMQSAEEYRQLIIAYQNGAPIRLGDVATVEQGAENSWLGAW 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 276 ANKEQAIVMNVQRQPGANIISTADSIRQMLPQLTESLPKSVKVTVLSDRTTNIRASVDDT 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L++I T A++  L  ++   ++  + +
Sbjct: 336 QFELMMAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTI 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G 
Sbjct: 396 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMGD 455

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS   ++++   M   ++  + ++  +    +   +    IA
Sbjct: 456 IVGRLFREFAITLAVAILISAVVSLTLTPMMCARMLSQESLRKQNRFSRASEKMFDRIIA 515

Query: 540 IQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                        W      L ++    LL+          +    +      P   S  
Sbjct: 516 AYGRGLAKVLNHPWLTLSVALSTLLLSVLLWVFIPKGFFPVQDNGIIQGTLQAPQSSSFA 575

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  Q+ D+  Q+   +             S+   R+   +K       
Sbjct: 576 NMAQRQRQVADVILQDPAVQSLTSFVGVDGTNPSLNSARLQINLKPLDERDD 627



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 58/150 (38%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 339 LMMAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 397

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 398 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 454

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++A  S+ +  
Sbjct: 455 DIVGRLFREFAITLAVAILISAVVSLTLTP 484


>gi|301308841|ref|ZP_07214793.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 20_3]
 gi|300833365|gb|EFK63983.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 20_3]
          Length = 1039

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 68/613 (11%), Positives = 175/613 (28%), Gaps = 49/613 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +++  I   GL       L +  +D  P       +                 
Sbjct: 9   RKPVSTALVFVAIVIFGLFS-----LSRLSVDLLPEIETNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +          R+  + +TL F      +   + V   L  
Sbjct: 55  SASDIEMNVSKPLENVLNSVSDLKHITSQSRENISIVTLEFNYGIDIDVATNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D +  ++      +I I++     ++  +   +       +  + +       
Sbjct: 115 VESSLPDDVENPIIFKFGTDDIPILILSVTAEESTNALYKILD---DKVSNPLARISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S   + +L    DP +L     T   +S      N +  G    +           
Sbjct: 172 AVSISGTPIRELQVYCDPYKLEAYGQTIEGISTIIAQENRNTPGGSVDI----------- 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G +        +    K ++D+       +  +      +   +       
Sbjct: 221 ---------GSNTYSLRVQGEFTDAKQMLDLVIGSQNGKNVYLRDVARVEDSIEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        ++A         V        L +   
Sbjct: 272 FNNGTKGGMIVIQKQSGANSVNIAKKVHQKLPEIQASLPSDVKLDVIMDTSTNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  I   +V++V+F+ +   +   +   +I +++I + A L   G TL + S++ + 
Sbjct: 332 LKETIMITFIIVMLVVFVFLGRWRATFIIILTIPISLIASFAYLLASGNTLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG+ VD  I+V E +     +      +     +    ++  S +T L   + L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSQPKQAAIHATNEVAISVIASTLTMLAVFLPLTMVT 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   +     + + +++S   A+++   +   +         +       I+    +
Sbjct: 452 GMAGILFKQLGWIVSIIMIVSTVGALTLTPMLCSQLLRQQPEKGKLYRMFFTPIEKGLNA 511

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +       +   VG +++F    + +       +       I + +      
Sbjct: 512 LDRSYGRFLNWAVRHRKTVIVGATLIFIGSMMLIPVIKTEFFPTQDNARIGITIELPIGT 571

Query: 590 DLSVVRSNLESLQ 602
              + R     + 
Sbjct: 572 RQDITRELALDID 584



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 99/281 (35%), Gaps = 7/281 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +   L   G          + +G    + V L  V    +S++       N   +  
Sbjct: 220 IGSNTYSLRVQGEFTDAKQMLDLVIGSQNGKNVYLRDVARVEDSIEERAQETFNNGTKGG 279

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +V  +    +SV   + +     +I   +P     +  +         I      ++I+
Sbjct: 280 MIVIQKQSGANSVNIAKKVHQKLPEIQASLPSDVKLDVIMDTSTNILNTIDSLKETIMIT 339

Query: 677 AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I +++ +++   +W      I T+ + +  +  +    G   N+ +++++   IG  V+
Sbjct: 340 FIIVMLVVFVFLGRWRATFIIILTIPISLIASFAYLLASGNTLNIISLSSLSIAIGMVVD 399

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI 794
           D +VV + +             +     + NE     + +++      LP+  V G + I
Sbjct: 400 DAIVVLENV---TTHIERGSQPKQAAIHATNEVAISVIASTLTMLAVFLPLTMVTGMAGI 456

Query: 795 --GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                   ++  ++V+   ++ +   +   +   + +  ++
Sbjct: 457 LFKQLGWIVSIIMIVSTVGALTLTPMLCSQLLRQQPEKGKL 497



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 86/233 (36%), Gaps = 7/233 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              +L  +            ++  ++ +    G   A + ++   + ++ ++   S +   
Sbjct: 791  IRDLGKVVERMTPPTIERKDRERVITVSAVAGKGAALSDLVAAARNELKQMDIPSDVSWQ 850

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFAL 713
                 +  ++      + +++  I + I +  +F+        + ++    T  +   A+
Sbjct: 851  LGGTFEDQQDTFTDLGILMVLIIILVFIVMAAQFESLVDPFVIMFSIPFAFTGIVLGLAV 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                  + A+  V+ L+G  V + +V+ D     +      +     +  +    L   +
Sbjct: 911  TQTPLGVMALIGVIMLMGIVVKNGIVLID---YTILCRERGMGIITSVVTAGKSRLRPVL 967

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             T++   + ++PMAV    G  +  S  + +A+G+ V+   ++ I   +    
Sbjct: 968  MTTLTTVLGMIPMAVGTGEGSEMWRSMGMTVAWGLSVSTLITLIIVPTVYAVF 1020


>gi|255015963|ref|ZP_05288089.1| putative transmembrane Acr-type transport protein [Bacteroides sp.
           2_1_7]
 gi|256841988|ref|ZP_05547493.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262384244|ref|ZP_06077379.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377426|ref|ZP_06987379.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 3_1_19]
 gi|256736304|gb|EEU49633.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262293947|gb|EEY81880.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265840|gb|EFI07500.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 3_1_19]
          Length = 1039

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 68/613 (11%), Positives = 175/613 (28%), Gaps = 49/613 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +++  I   GL       L +  +D  P       +                 
Sbjct: 9   RKPVSTALVFVAIVIFGLFS-----LSRLSVDLLPEIETNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +          R+  + +TL F      +   + V   L  
Sbjct: 55  SASDIEMNVSKPLENVLNSVSDLKHITSQSRENISIVTLEFNYGIDIDVATNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D +  ++      +I I++     ++  +   +       +  + +       
Sbjct: 115 VESSLPDDVENPIIFKFGTDDIPILILSVTAEESTNALYKILD---DKVSNPLARISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S   + +L    DP +L     T   +S      N +  G    +           
Sbjct: 172 AVSISGTPIRELQVYCDPYKLEAYGQTIEGISTIIAQENRNTPGGSVDI----------- 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G +        +    K ++D+       +  +      +   +       
Sbjct: 221 ---------GSNTYSLRVQGEFTDAKQMLDLVIGSQNGKNVYLRDVARVEDSIEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        ++A         V        L +   
Sbjct: 272 FNNGTKGGMIVIQKQSGANSVNIAKKVHQKLPEIQASLPSDVKLDVIMDTSTNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  I   +V++V+F+ +   +   +   +I +++I + A L   G TL + S++ + 
Sbjct: 332 LKETIMITFIIVMLVVFVFLGRWRATFIIILTIPISLIASFAYLLASGNTLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG+ VD  I+V E +     +      +     +    ++  S +T L   + L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSQPKQAAVHATNEVAISVIASTLTMLAVFLPLTMVT 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   +     + + +++S   A+++   +   +         +       I+    +
Sbjct: 452 GMAGILFKQLGWIVSIIMIVSTVGALTLTPMLCSQLLRQQPEKGKLYRMFFTPIEKGLNA 511

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +       +   VG +++F    + +       +       I + +      
Sbjct: 512 LDRGYGRFLNWAVRHRKTVIVGATLIFIGSMMLIPVIKTEFFPTQDNARIGITIELPIGT 571

Query: 590 DLSVVRSNLESLQ 602
              + R     + 
Sbjct: 572 RQDITRELALDID 584



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 99/281 (35%), Gaps = 7/281 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +   L   G          + +G    + V L  V    +S++       N   +  
Sbjct: 220 IGSNTYSLRVQGEFTDAKQMLDLVIGSQNGKNVYLRDVARVEDSIEERAQETFNNGTKGG 279

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +V  +    +SV   + +     +I   +P     +  +         I      ++I+
Sbjct: 280 MIVIQKQSGANSVNIAKKVHQKLPEIQASLPSDVKLDVIMDTSTNILNTIDSLKETIMIT 339

Query: 677 AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I +++ +++   +W      I T+ + +  +  +    G   N+ +++++   IG  V+
Sbjct: 340 FIIVMLVVFVFLGRWRATFIIILTIPISLIASFAYLLASGNTLNIISLSSLSIAIGMVVD 399

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI 794
           D +VV + +             +     + NE     + +++      LP+  V G + I
Sbjct: 400 DAIVVLENV---TTHIERGSQPKQAAVHATNEVAISVIASTLTMLAVFLPLTMVTGMAGI 456

Query: 795 --GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                   ++  ++V+   ++ +   +   +   + +  ++
Sbjct: 457 LFKQLGWIVSIIMIVSTVGALTLTPMLCSQLLRQQPEKGKL 497



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 86/233 (36%), Gaps = 7/233 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              +L  +            ++  ++ +    G   A + ++   + ++ ++   S +   
Sbjct: 791  IRDLGKVVERMTPPTIERKDRERVITVSAVAGKGAALSDLVAAARNELKQMDIPSDVSWQ 850

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFAL 713
                 +  ++      + +++  I + I +  +F+        + ++    T  +   A+
Sbjct: 851  LGGTFEDQQDTFTDLGILMVLIIILVFIVMAAQFESLVDPFVIMFSIPFAFTGIVLGLAV 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                  + A+  V+ L+G  V + +V+ D     +      +     +  +    L   +
Sbjct: 911  TQTPLGVMALIGVIMLMGIVVKNGIVLID---YTILCRERGMGIITSVVTAGKSRLRPVL 967

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             T++   + ++PMAV    G  +  S  + +A+G+ V+   ++ I   +    
Sbjct: 968  MTTLTTVLGMIPMAVGTGEGSEMWRSMGMTVAWGLSVSTLITLIIVPTVYAVF 1020


>gi|325295266|ref|YP_004281780.1| protein-export membrane protein SecD [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065714|gb|ADY73721.1| protein-export membrane protein SecD [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 556

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 137/467 (29%), Positives = 238/467 (50%), Gaps = 33/467 (7%)

Query: 56  LVLEVDE-DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIAD 113
           L L+       ++   +   + +R+ + + G+    + +   ++I +     +  E    
Sbjct: 117 LTLKPSYISKEIDRLAEQALETIRNRIDELGVAEPVIVRNGKDRIIVELPGIKDPERAKK 176

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +    +    ++    +    + T            ++    S A    ++  ++   +
Sbjct: 177 VIGKVAKLEFKEVVDTAQTPDELITKLGGTIPSGETVSVVPSPSGAKFYLLKDGKKEELK 236

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   E                       +++  G   + +   V     K   + G    
Sbjct: 237 VNSLE---------------------ELVKKFGGHVPEDNQILVQEIKDKSERVIGY--- 272

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                  ++++ +  ++G +L  A  + D       V    +  GAR F + T  +IG  
Sbjct: 273 -----QFFILKKEPILTGAYLKDAYPSTDEYGMPA-VSFELNSEGARIFKDYTSKHIGVR 326

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+VLD +V +APVI  A   G+ QI+G F+ + A  L+ +LRAG+LP  + I+EE  VG
Sbjct: 327 LAIVLDNKVQSAPVIRSA-IGGRGQITGQFSYQEAKDLSIVLRAGALPAPVKIIEETTVG 385

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG +SI KG  A VAGL++++LFM+  Y   G +AD ++ +NV +  A L+LLGATLT
Sbjct: 386 PSLGKESIEKGIKAGVAGLIIVMLFMVAYYKLSGAIADLALLMNVAVLWAALALLGATLT 445

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAG +L IG+AVD+N+++ ERIREE RK ++++ +++ GFSRA+ TI D+N+T L+A
Sbjct: 446 LPGIAGFILTIGMAVDANVIIFERIREELRKGRNLYSAVEAGFSRAWGTIIDANVTTLVA 505

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            +VLF FG G ++GFA+T+ L IL SMFTA+ + + ++  I++YK  
Sbjct: 506 AIVLFQFGTGPIKGFAVTLSLGILSSMFTAVFVTKVLLDVIVKYKSR 552



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 86/175 (49%), Gaps = 4/175 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             VGP + +E I KGI   +   I +++++   +K   A+ A   L++++       AL 
Sbjct: 382 TTVGPSLGKESIEKGIKAGVAGLIIVMLFMVAYYKLSGAI-ADLALLMNVAVLWAALALL 440

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G    L  +A  +  IG +V+  V++++R+R+ ++      +    ++   +   G  + 
Sbjct: 441 GATLTLPGIAGFILTIGMAVDANVIIFERIREELR---KGRNLYSAVEAGFSRAWGTIID 497

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            ++   ++ + +  +G   I  FA+ ++ GI+ +  +++F+   +L  I  ++++
Sbjct: 498 ANVTTLVAAIVLFQFGTGPIKGFAVTLSLGILSSMFTAVFVTKVLLDVIVKYKSR 552


>gi|323499664|ref|ZP_08104632.1| hypothetical protein VISI1226_18581 [Vibrio sinaloensis DSM 21326]
 gi|323315265|gb|EGA68308.1| hypothetical protein VISI1226_18581 [Vibrio sinaloensis DSM 21326]
          Length = 1040

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 78/609 (12%), Positives = 180/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S     + IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSSSVLGSSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRIWLDPAKMAALGLTATDVMNVLNANNYQSATGQAIGEFVLYNGTADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +  E+  + ++    +    +    V +       R         +           
Sbjct: 233 QISNVEELENLVVSSDEGSITRLSDIAKVTLEKSHDVYRASANGQEAVV----------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S + 
Sbjct: 282 ---------AAINAAPSANPINIAADVLELLPQLERNLPSTIKMNVMYDSTIAINESINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQGMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +        K  + +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEEPSKFEQKVHHVLDGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               ++              I+F    +   F        + KG I L   A    +L  
Sbjct: 513 YAKMLSAVMQHRPVVIAFAVIVFGSLPMLFKFIPSELAPSEDKGVIMLLGTAPSNANLDF 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 MQNTMNDVN 581



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 85/257 (33%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +         LS +                   E            + +     +  + 
Sbjct: 244 VVSSDEGSITRLSDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++   +P +   N          E I + I  ++ +A+ +L+ I +    +   +  I 
Sbjct: 304 PQLERNLPSTIKMNVMYDSTIAINESINEVIKTIVEAALIVLVVITLFLGSFRAVIIPIV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +          G  +NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSLIGVAMVMQGMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGESPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +     + ++
Sbjct: 481 SPMMCSKMLKANEEPSK 497



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 72/783 (9%), Positives = 203/783 (25%), Gaps = 36/783 (4%)

Query: 74   SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             +EL + +        S+ ++ +   ++   S      +      +    +        N
Sbjct: 237  VEELENLVVSSD--EGSITRLSDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPIN 294

Query: 134  LLVTTTEKEISI---VLSQNNIDQVISHAIEQS---MEIIRQRIDQIGISESTIQRLGSH 187
            +     E    +   + S   ++ +    I  +    E+I+  ++   I    I      
Sbjct: 295  IAADVLELLPQLERNLPSTIKMNVMYDSTIAINESINEVIKTIVEAALIVLVVITLFLGS 354

Query: 188  RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
               + +P    P  L  +      M F       +    +  +  + D         D+ 
Sbjct: 355  FRAVIIPIVTIPLSLIGVAMVMQGMGFSW--NLMTLLAMVLAIGLVVDDAIVVLENVDRH 412

Query: 248  EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
               G     A      +   PV+ ++           +     G             A  
Sbjct: 413  IKLGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL---TLAGS 469

Query: 308  INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
            +  +            +               +   L+ +  R                A
Sbjct: 470  VFVSGIVALTLSPMMCSKMLKANEEPSKFEQKVHHVLDGMTNRYAKMLSAVMQHRPVVIA 529

Query: 368  IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
                +   +  +          ++    + ++ T    + L       +    +L     
Sbjct: 530  FAVIVFGSLPMLFKFIPSELAPSEDKGVIMLLGTAPSNANLDFMQNTMNDVNTILSDQPE 589

Query: 428  VDSNILVNERIREENRKN---QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            V    +                  +   +   S   + +           V  F      
Sbjct: 590  VAYAQVFTGVPNSNQAFGIASMVPWSEREASQSEVANRVGGLVGNVPGMAVTAFQMPELP 649

Query: 485  VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
              G  + +   I            A  +          +  +    +      I+I   +
Sbjct: 650  GAGSGLPIQFVITTPNAFESLFSIATDVLTEVKSSPMFVYSDLDLNYDSATMKISIDKDK 709

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVRSNLESLQI 603
            A  +GV +  +    S  +   +     ++ +    +  V     ++   + +       
Sbjct: 710  AGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNNYYVRSAD 769

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI------------ 651
            G           + +   +  P  +   +  +  V    + +                  
Sbjct: 770  GKAVPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPAPGSAMGDAIAWFEDIAASKLPSG 829

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     L  + ++ L I   L 
Sbjct: 830  YNHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++        +S  + + ++    L
Sbjct: 890  ALAWGAATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSKTEAVMEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDW 826
               + T+ A    ++P+    G      F+I +    G+ +    ++F+   I  ++ + 
Sbjct: 948  RPILMTTAAMIAGLIPLMYASGAGAAQRFSIGIVIVAGLAIGTIFTLFVLPVIYSYLAEK 1007

Query: 827  RAK 829
               
Sbjct: 1008 HKP 1010


>gi|116330035|ref|YP_799753.1| AcrB family efflux transporter [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116123724|gb|ABJ74995.1| Efflux pump, AcrB family [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 1051

 Score =  150 bits (378), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 76/583 (13%), Positives = 154/583 (26%), Gaps = 35/583 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  +  ++ + I   G +        +  + + P                   L L   
Sbjct: 8   QNPIFSWMMMAAIIIFGSV-----GFSRMGVSQMPDVDFPVV---------NVSLTLVGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    ++               IT+    SR  +    ++   L  
Sbjct: 54  NAQVMETDVVDPIEEALMAVEGVTEVRSISSDGSATITVELELSRNVDVAVQEIQTKLAQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V++KL  +    ++  +   ++ I+              E+ + +     D+        
Sbjct: 114 VSNKLPEELDPAVITKSNPDDVPIIWVSVTAVDKTE--KEKMLFVKDFLKDKFQEISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +    +   +    DP RL +       +       N          R    S     
Sbjct: 172 EIILGGYVDRTINVYLDPLRLSRNEIAVDDIVNTLKEQNLEVPSGRLENRTNEISLRAVG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +   I LN  +                     R         +   L  +    
Sbjct: 232 EVPTAEQFGNIFLNSRSG----------------SPLFRSIRLKDIATVEDGLGEIRRIS 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +        L+          V   N G    S + 
Sbjct: 276 RFNGISAVAIGIKKLKGANAVQVGDLVKAKVQELKPKLPKGYDLTVSNDNTGYIRDSVNE 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A L   V  + +   K       +I  +VI T   L   G T+   ++ G+ 
Sbjct: 336 LEFTLIFSAILTGFVCRLFLGNWKSTGNVLLAIPTSVIGTFLFLYFAGFTVNTFTMLGLS 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+V E I   +   +S F +   G          + +      + + F  
Sbjct: 396 LATGIVVDDAIMVLENITRHHEMGKSWFKAALEGALEIRFAALAATLAVAAIFLPVAFMK 455

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    F IT+ +++L+S+F A+S            KK         S F       
Sbjct: 456 GIIGRYFLEFGITISVAVLLSLFEALSFTPMRSSLYREDKKDNKKKNYLFSVFSADMRES 515

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +++        +  +           +  +     K    +
Sbjct: 516 WNRWISRISVFKRMDPIIERFLDYSTDLYARSIDFVLKYPKSI 558



 Score = 40.8 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 34/317 (10%), Positives = 90/317 (28%), Gaps = 13/317 (4%)

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
            + R + +++   +  ++          L    + +   R       IS+          
Sbjct: 178 YVDRTINVYLDPLRLSRNEIAVDDIVNTLKEQNLEVPSGRLENRTNEISLRAVGEVPTAE 237

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
               +         +   +       +      +  +   +       G K        Q
Sbjct: 238 QFGNIFLNSRSGSPLFRSIRLKDIATVEDGLGEIRRISRFNGISAVAIGIKKLKGANAVQ 297

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIY 683
            GD       ++ +K K+ +   L+   +          EL    I   ++   +     
Sbjct: 298 VGD--LVKAKVQELKPKLPKGYDLTVSNDNTGYIRDSVNELEFTLIFSAILTGFVC---- 351

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
                 W      +  +   +  T  F    G   N   +  +    G  V+D ++V + 
Sbjct: 352 RLFLGNWKSTGNVLLAIPTSVIGTFLFLYFAGFTVNTFTMLGLSLATGIVVDDAIMVLEN 411

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIP 800
           +    + +    S+     +   E    ++  ++A     LP+A   G +      F I 
Sbjct: 412 I---TRHHEMGKSWFKAALEGALEIRFAALAATLAVAAIFLPVAFMKGIIGRYFLEFGIT 468

Query: 801 MAFGIVVAASSSIFIAA 817
           ++  ++++   ++    
Sbjct: 469 ISVAVLLSLFEALSFTP 485


>gi|28896812|ref|NP_796417.1| putative multidrug resistance protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260362651|ref|ZP_05775550.1| RND transporter, HAE1/HME family, permease protein [Vibrio
           parahaemolyticus K5030]
 gi|260877716|ref|ZP_05890071.1| transporter, AcrB/AcrD/AcrF family [Vibrio parahaemolyticus
           AN-5034]
 gi|260895635|ref|ZP_05904131.1| transporter, AcrB/AcrD/AcrF family [Vibrio parahaemolyticus
           Peru-466]
 gi|260902659|ref|ZP_05911054.1| RND transporter, HAE1/HME family, permease protein [Vibrio
           parahaemolyticus AQ4037]
 gi|28805020|dbj|BAC58301.1| putative multidrug resistance protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308088566|gb|EFO38261.1| transporter, AcrB/AcrD/AcrF family [Vibrio parahaemolyticus
           Peru-466]
 gi|308089978|gb|EFO39673.1| transporter, AcrB/AcrD/AcrF family [Vibrio parahaemolyticus
           AN-5034]
 gi|308109639|gb|EFO47179.1| RND transporter, HAE1/HME family, permease protein [Vibrio
           parahaemolyticus AQ4037]
 gi|308113728|gb|EFO51268.1| RND transporter, HAE1/HME family, permease protein [Vibrio
           parahaemolyticus K5030]
 gi|328471591|gb|EGF42468.1| putative multidrug resistance protein [Vibrio parahaemolyticus
           10329]
          Length = 1040

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/609 (11%), Positives = 176/609 (28%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    ++  +               ++ IT++   +         +      
Sbjct: 55  SANLIQGFITQPLEQAVAQADNIDYMTSQSVLGKSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPAKMGALKLTATDVMSVLNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                      +                 +    +  +   
Sbjct: 233 QVSNVAELEA--------------------LVVKTGEGDVIRLGDIAKVTLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLDLLPQLERNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +++  +        +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKANEKPSKFEQKVHHILDGMTTR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +               I+F+   +   F        + KG + L   A    +L  
Sbjct: 513 YEGMLKAVMAHRPVVIAFAIIVFASLPVLFKFIPSELAPSEDKGVVVLMGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 IQNTMNDVN 581



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +                   E            + +     +  +  ++   +
Sbjct: 251 DVIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLDLLPQLERNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + +  ++ +A+ +L+ I +    +   +  I T+ L + 
Sbjct: 311 PSNIKMNVMYDSTIAINESIHEVVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +     K ++
Sbjct: 488 MLKANEKPSK 497



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 74/791 (9%), Positives = 206/791 (26%), Gaps = 44/791 (5%)

Query: 71   QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               S+           G   + ++ +   ++   S      +      +    +      
Sbjct: 232  TQVSNVAELEALVVKTGEGDVIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSAN 291

Query: 131  KKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISESTIQRL 184
              N+     +    +   + S   ++ +    I  +    E+++  ++   I    I   
Sbjct: 292  PINIAADVLDLLPQLERNLPSNIKMNVMYDSTIAINESIHEVVKTILEAAVIVLVVITLF 351

Query: 185  GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                  + +P    P  L  +      M F       +    +  +  + D         
Sbjct: 352  LGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSW--NLMTLLAMVLAIGLVVDDAIVVLENV 409

Query: 245  DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            D+    G     A      +   PV+ ++           +     G             
Sbjct: 410  DRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL---TL 466

Query: 305  APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
            A  +  +            +               +   L+ +  R  G      +    
Sbjct: 467  AGSVFVSGIIALTLSPMMCSKMLKANEKPSKFEQKVHHILDGMTTRYEGMLKAVMAHRPV 526

Query: 365  TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
              A    +   +  +          ++    + ++ T    + L       +    +L  
Sbjct: 527  VIAFAIIVFASLPVLFKFIPSELAPSEDKGVVVLMGTAPSNANLDYIQNTMNDVNKILSD 586

Query: 425  GLAVDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITALIATVVL- 477
               V+   + N                 S   +     ++    +  S     I    + 
Sbjct: 587  QPEVEYAQVFNGVPNSNQAFGLATLKPWSEREASQSEITKRVGGLVASVPGMSITAFQMP 646

Query: 478  ------------FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF-IIRYKKMKSID 524
                        F            T+   +L  + ++   V + +            ID
Sbjct: 647  ELPGAGSGLPIQFVITTPNSFESLFTIASDVLTDVASSPMFVYSDLDLNYDSATMKIKID 706

Query: 525  INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             +    + +    I I        G    I  +  S  ++      + ++ +      V 
Sbjct: 707  KDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMKNYYVR 766

Query: 585  A--NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +   + V L  + +     +   +   N                   A     ++ + K+
Sbjct: 767  SVDGKAVPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPSPGVAMGDAINWFEDVAQNKL 826

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                    +        + S      G+     +   + + + I+F+     +  + ++ 
Sbjct: 827  PAGYNHDYMGEARQFVTEGSALYATFGL-----ALAIIFLVLAIQFESLRDPIVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L +   L   A      N+ +   ++TL+G      +++ +  ++        +S  D +
Sbjct: 882  LAVCGALIALAWGTASMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + T+ A    ++P+      G +   S  I +  G+ +    ++F+   
Sbjct: 940  MEAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPV 999

Query: 819  ILLFIYDWRAK 829
            I  ++ +    
Sbjct: 1000 IYSYLAEKHKP 1010


>gi|312171269|emb|CBX79528.1| Cation/multidrug efflux pump [Erwinia amylovora ATCC BAA-2158]
          Length = 1066

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/530 (11%), Positives = 145/530 (27%), Gaps = 38/530 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G+               +P+                   +     
Sbjct: 10  RPVATILLMVAVLASGIFAYGMLSTSALPQVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F+     +    +V   +   
Sbjct: 56  PDVMASSVTAPLERQLGQMPGLSQMTSSSSSGSSVITLQFSLELSLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NS L  D              S V++            +    +  +   ++        
Sbjct: 116 NSLLPTDLPNPPTYKKVNPADSAVIALAASSD-TLPLTKVQDLVNTRVALKLSQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +P+ L     T   ++      N +     F  ++   +      
Sbjct: 175 VTLAGGQQPAIRVRINPNALAAHGLTLEDVNTLVSNSNVNGSKGGFDGQYHSVTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                      ++                 I +          
Sbjct: 235 LRSAAQ--------------------YGNLILTYQNGAALRLHDVAQIDEAAENSYQSAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++        L+A         V          S S  
Sbjct: 275 ANTSPAIVISVQRQPGANVIAVVDAIKARLPTLQAALPDGVKLTVVSDRTQTIRASISDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      L+   ++ L+++ T  ++ L G +L   ++  + +
Sbjct: 335 QFELMLAIALVVMVTFLFLRNVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  +D  I+V E I     + ++   +   G ++   TI     + +   + L F G 
Sbjct: 395 ATGFVIDDAIVVVENISRRLEQGETPMEAALKGSAQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             G   R FAIT+ +SIL+SM  ++++   +  +++     +        
Sbjct: 455 VVGRLFREFAITLAVSILVSMLISLTLTPMLCAYLLHSVPPERQSRFYRR 504



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 7/156 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+ ++++R      L     + L +  T G   L G   N   + A+    
Sbjct: 338 LMLAIALVVMVTFLFLR-NVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLTLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ ++D +VV + +    +      +  +   K   +     +  + +    ++P+   G
Sbjct: 397 GFVIDDAIVVVENI---SRRLEQGETPMEAALKGSAQIGFTIISLTFSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              G +   FAI +A  I+V+   S+ +   +  ++
Sbjct: 454 DVVGRLFREFAITLAVSILVSMLISLTLTPMLCAYL 489



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 84/218 (38%), Gaps = 6/218 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + +   D  +  +  + + +  + +   S I           +      +  ++ + +
Sbjct: 840  VTVSFNLNDGYSLEQAQQAIGEVSSALARPSGITLRWQGETAAFQNATGNTLWLILAALL 899

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             M + + I ++ +   +  ++TL       L    L   EF+L A+  V+ LIG    + 
Sbjct: 900  TMYVVLGILYESFIHPVTILSTLPSAAVGALLTLLLCNTEFSLIALIGVILLIGIVKKNA 959

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +        +S RD I ++        + T+MAA +  LP+ +    G  + 
Sbjct: 960  IMMIDFALE--AENKQHLSPRDAIHQACLLRFRPILMTTMAALLGALPLMLASGSGAELR 1017

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                + +  G++ +   ++F    I L+      +  R
Sbjct: 1018 QPLGLVIVGGLIFSQVLTLFSTPVIYLWFDRLAQRFHR 1055


>gi|312884782|ref|ZP_07744480.1| hypothetical protein VIBC2010_17009 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309367549|gb|EFP95103.1| hypothetical protein VIBC2010_17009 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 1040

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/526 (12%), Positives = 154/526 (29%), Gaps = 39/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAIF-----KMQVQEYPEMTNTVVT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S     + IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAIAQADNIDFMTSSSELGSSTITVNMKLNSDPNAALADILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S     +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTLSTGASTAVLYIGFTSDELESSQT--TDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP ++  L  T + +S      N           F+  +     
Sbjct: 173 KIDLFGGMKYALRVWLDPEKMAALGLTASDISNVLNANNFQSATGQATGEFVLYNGSTDT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                      +                 +    +  +   
Sbjct: 233 QVSNVDELKA--------------------LVVKSDKGNLVRLGDVAKVSLAKSHDVFRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   +           V   +  A   S   
Sbjct: 273 SANGKDAVVAAINATPSANPINIARDVLALLPQIERNLPSNIKMTVLYDSTEAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTIVEAAIIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHVKLGESPFRAAIIGTREIALPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              G   + FA+T+  ++ +S   A+++   M   +++     S  
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIVALTLSPMMCSKMLKAHAKPSRF 498



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/249 (16%), Positives = 88/249 (35%), Gaps = 9/249 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V     +             +            + +   R +  +  +I   +P 
Sbjct: 253 VRLGDVAKVSLAKSHDVFRASANGKDAVVAAINATPSANPINIARDVLALLPQIERNLPS 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
           +          +   E I + I  ++ +AI +L+ I +    +   +  I T+ L +   
Sbjct: 313 NIKMTVLYDSTEAINESIHEVIKTIVEAAIIVLVVITLFLGSFRAVIIPIVTIPLSLIGV 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSIN 766
                  G  +NL  + A++  IG  V+D +VV     +N+  +     S          
Sbjct: 373 AMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVL----ENVDRHVKLGESPFRAAIIGTR 428

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   +
Sbjct: 429 EIALPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGAVFVSGIVALTLSPMMCSKM 488

Query: 824 YDWRAKNAR 832
               AK +R
Sbjct: 489 LKAHAKPSR 497



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + I + I+F+     +  + ++ L I   L 
Sbjct: 830  YNHDYLGESRQYVTEGSALYATFGLALAVIFIVLSIQFESLRDPVVILVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++       S +  + + ++    L
Sbjct: 890  ALAWGAATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKRSRT--EAVMEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDW 826
               + T+ A    ++P+    G      F+I +    G+ +    ++F+   I  ++   
Sbjct: 948  RPILMTTAAMIAGLVPLLYASGAGAQQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLAQH 1007

Query: 827  RAK 829
               
Sbjct: 1008 HKP 1010


>gi|330941814|gb|EGH44560.1| acriflavin resistance protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 519

 Score =  150 bits (378), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/538 (10%), Positives = 147/538 (27%), Gaps = 38/538 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
             G   R FAIT+G++ILIS+  ++++   M   +++ +  +              D 
Sbjct: 455 VVGRLFREFAITLGVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDW 512



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 62/161 (38%), Gaps = 8/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +    +      +      K   + +G ++ +   + I+VL   ++   
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMAD 454

Query: 793 VI----GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           V+      FAI +   I+++   S+ +   +   +     K
Sbjct: 455 VVGRLFREFAITLGVAILISLVVSLTLTPMMCARLLKREPK 495


>gi|189465026|ref|ZP_03013811.1| hypothetical protein BACINT_01370 [Bacteroides intestinalis DSM
           17393]
 gi|189437300|gb|EDV06285.1| hypothetical protein BACINT_01370 [Bacteroides intestinalis DSM
           17393]
          Length = 1070

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/690 (11%), Positives = 188/690 (27%), Gaps = 56/690 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +GL+      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISVLIVILGLI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +          I++ F      +  A  V  
Sbjct: 51  TGANAQTVLNSVIAPLEDQINGVENMMYMTSNATNSGSADISVYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +++     +    +            I ++   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLMVFSIYDETDQYNIEFLENYANINLIPEVKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +     P  + Q       ++      N       FG    R + 
Sbjct: 171 AGVGDAMVLGT-DYSMRIWLKPDVMAQYKLIPNDVAAVLAEQNIEAAPGQFGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKAMENGEVLRLKDIAEIELGRLTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               + +        
Sbjct: 274 SFNNTVNGHKAVSCIVFQMAGSNATQTISDLEALLNDYSEKLPSGLQINIAQSANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVIKTLIEAFILVFIVVYIFLQDFRSTLIPAIAIPVALIATFFVLKLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   + 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARTASIDAMSELGGAIVSITLVMMSVFIP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK------------KMK 521
           + F G   G   R F +TM ++I  S   A+++  A+    ++              +  
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGFSALNALTLSPALCAIFLKPHDEHGEKKSTFISRFH 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           +       +         + F++ R+   G+     +  I  +         +   G  +
Sbjct: 514 TGFNVAYDKMLKKYKNNVLFFIQKRWLSFGLVAGSIVLLIFFMKITPTGMVPNEDTGTIM 573

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
           GV+   P         +       ++ +     +  +    +  G   +   ++  +K  
Sbjct: 574 GVVTLPPGTSQERAQEVLYRVDSLVAAEPAVASRTVISGYSFIGGQGPSYGSIIIKLKNW 633

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                  ++      +  +  + +    ++
Sbjct: 634 EERSTMQNSNIVYITLFMRAQKIIKEAQVL 663



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/200 (12%), Positives = 63/200 (31%), Gaps = 23/200 (11%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDI 704
               E+ G             G+I     + +Y+ +      +   L  + +    L+   
Sbjct: 853  FAYELGGMAREEAETSGSTTGLIFVLCFVFVYLLLSAQYESYILPLAVLLSIPFGLLGSF 912

Query: 705  TKTLGFFALFGIEF----------NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                G  A+  I            ++    A++ L+G    + +++ +     +      
Sbjct: 913  LFVNGMSAIGNISILKMIMGSMSNDIYMQIALIMLMGLLAKNAILIIEFA---LDRRKMG 969

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            +S            L   + TS+A  + ++P+ +    G +   +       G+++    
Sbjct: 970  MSITWAAVLGAAARLRPILMTSLAMIVGLIPLMLASGAGANGNRTLGTSAIGGMLIGMIL 1029

Query: 812  SIFIAAPILLFIYDWRAKNA 831
             IFI   + +     + K  
Sbjct: 1030 QIFIVPALFVAFQYLQEKIK 1049



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 79/205 (38%), Gaps = 6/205 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      LE +    +E +P     N            I + I  +I + I
Sbjct: 288 IVFQMAGSNATQTISDLEALLNDYSEKLPSGLQINIAQSANDFLFASIHEVIKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I    +   L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYIFLQDFRSTLIPAIAIPVALIATFFVLKLIGFSINLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R     +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SARTASIDAMSELGGAIVSITLVMMSVFIPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPI 819
             F + MA  I  +A +++ ++  +
Sbjct: 466 RQFGLTMAIAIGFSALNALTLSPAL 490


>gi|33594668|ref|NP_882312.1| AcrB/AcrD/AcrF family protein [Bordetella pertussis Tohama I]
 gi|33564744|emb|CAE44069.1| AcrB/AcrD/AcrF family protein [Bordetella pertussis Tohama I]
 gi|332384079|gb|AEE68926.1| AcrB/AcrD/AcrF family protein [Bordetella pertussis CS]
          Length = 1022

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/535 (11%), Positives = 150/535 (28%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMVAILIAGLIA-----YRLLPVSALPEVDYPTIQ---------VVTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PDVMTSLVTSPLERQFGQMPGLNQMSSTSSGGASVITLQFSLDLSLDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D              + VL+   +        +    +  +   ++        
Sbjct: 116 SNLLPNDLPVPPTYNKVNPADAAVLT-LAVTSPTMPLPQVRDLVDTRMAQRLSQIPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     + A +    V  N ++            +      
Sbjct: 175 VSVAGGQRPAVRVQVNPQALASAGLSLADLRTAVVGANVNQPKGNLDGPIRSTTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                      D+                   +    +     
Sbjct: 235 LKSPTD--------------------YNDLIIAYRNDAPLRLSDVARAVQGAEDIRQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   LRA        +V          S +  
Sbjct: 275 VGDKPAILLNVQRQPGANVIDVVDCIHALLPQLRAAMPATLDLVVVADRTQTIRDSVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V F+ +      ++    + L++I T  ++ L G ++   ++  + +
Sbjct: 335 QFEMLLAVGLVVLVTFLFLRSLTATVIPSVVVPLSLIGTFGIMYLAGFSINNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G ++   T+     + +   + L F   
Sbjct: 395 ATGFVVDDAIVMIENIARHLEEGETPLQAALKGAAQIGFTLISLTFSLIAVLIPLLFMTE 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G   R FA+T+ ++ILIS+  ++++   M   ++R +  +       +   LI
Sbjct: 455 VVGRLFREFAVTLAVAILISLVVSLTLTPMMCARLLRPESEQRHGRFHQATGALI 509



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +     + L +  T G   L G   N   + A+    G+ V+D +V+ + +
Sbjct: 351 LFLRSLTATVIPSVVVPLSLIGTFGIMYLAGFSINNLTLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +      K   +     +  + +    ++P+       G +   FA+ +
Sbjct: 411 ---ARHLEEGETPLQAALKGAAQIGFTLISLTFSLIAVLIPLLFMTEVVGRLFREFAVTL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  I+++   S+ +  
Sbjct: 468 AVAILISLVVSLTLTP 483



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/215 (13%), Positives = 81/215 (37%), Gaps = 6/215 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  +  + +      + +  +E +     EI     I           +  +   +  +
Sbjct: 793  DQFPMTTVSFNLAPGASLSGAVEAISAVQAEIGLPLAIDTRFQGAALAFQNSLDSTLWLI 852

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + M I + I ++ +   +  ++TL       L    + G + ++  +  ++ LIG 
Sbjct: 853  LAAVVTMYIVLGILYESYIHPITILSTLPSAGVGALLALLISGTDLDMIGIIGIILLIGI 912

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D   +        ++ R+ I ++        + T++AA    LP+ +    
Sbjct: 913  VKKNAIMMIDFALE--AERKRGLAPREAIHEAALLRFRPILMTTLAALFGALPLMLSTGT 970

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            G  +     + M  G++V+   ++F    I L   
Sbjct: 971  GAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLMFD 1005


>gi|284032302|ref|YP_003382233.1| protein-export membrane protein SecD [Kribbella flavida DSM 17836]
 gi|283811595|gb|ADB33434.1| protein-export membrane protein SecD [Kribbella flavida DSM 17836]
          Length = 585

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 112/546 (20%), Positives = 200/546 (36%), Gaps = 34/546 (6%)

Query: 45  SLGLDLRGGSHLVLEVD----EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKIT 99
            LGLDLRGG+ + L               L    + +   +   G+G   +     + I 
Sbjct: 36  KLGLDLRGGTTITLTAKSLAGGGTVTPEQLTEAKNIISQRVNGAGVGEAEIATAGGSHIN 95

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           ++   +     I       L       +      L   T     +   S          A
Sbjct: 96  VAVPGASQDSLIKQVGQTALLYFRVVYDAQAGAPLPAATPTPTPTGKPSTTPKPSATPSA 155

Query: 160 IEQS-------------------MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
              S                   +            ++ +                 DP 
Sbjct: 156 KPSSTLKPASPTATPNGRAWSSVLADATPTPTPAPTAKPSTPAAPPATPSAPPANAGDPL 215

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           + +    +  +          +            D +     +     + G  L  A+A 
Sbjct: 216 QWQPDAAS-QQAFAAYTCDKPAPVDDPAKPLISCDREKTTKYLLGPAILKGTDLADASAG 274

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV-----LDGRVLTAPVINQAIPSG 315
                 +  V+++F+  G  +F + T     +          LDG  ++ P +   IP G
Sbjct: 275 IPQGGFQWQVNLNFNNEGGEKFLQATTALSQRGQGQNLFAIVLDGETMSTPSVENPIPGG 334

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           +AQISG+F+   A  LA +L+ G+LP+  +I     +   LG D +  G  A + GL+L+
Sbjct: 335 QAQISGSFSESEARDLANVLKYGALPVSFDISSVETISPQLGGDQLSAGIWAGLIGLLLV 394

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSL----LGATLTLPSIAGIVLGIGLAVDSN 431
           ++F  + Y   GLV   S+ +   LT A + L    +G TLTL  IAG+++ IG+  DS 
Sbjct: 395 IVFSFLYYRGLGLVVVLSLAVAAALTYAAVVLLGKTMGFTLTLAGIAGLIVAIGITADSF 454

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           ++  ER+R+E R+ +S+  S++ G++RA  TI  ++  +L+A +VL+    G V+GFA T
Sbjct: 455 VIYFERLRDEVREGRSLRSSVETGWARAKHTIIAADSISLLAAIVLYVLAVGGVKGFAFT 514

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
           +GL+ LI +       + ++  + R                 +         +     V 
Sbjct: 515 LGLTTLIDLLVVFVFTKPLVTLLARTDFFGHGHRLSGLDPEQLGVERLPGQTKPSQRPVK 574

Query: 552 ISILFS 557
            S    
Sbjct: 575 ASTRKP 580



 Score = 97.1 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 90/265 (33%), Gaps = 9/265 (3%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           F   +N   + +GG +  + A   +       NL ++ +   +      E          
Sbjct: 280 FQWQVNLNFNNEGGEKF-LQATTALSQRGQGQNLFAIVLDGETMSTPSVENPIPGGQAQI 338

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G              K   +     I + E + P++  + +  GI   +I  + ++++ 
Sbjct: 339 SGSFSESEARDLANVLKYGALPVSFDISSVETISPQLGGDQLSAGIWAGLIGLLLVIVFS 398

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++ ++    L  + +L +    T     L G        L  +A ++  IG + +  V+ 
Sbjct: 399 FLYYR-GLGLVVVLSLAVAAALTYAAVVLLGKTMGFTLTLAGIAGLIVAIGITADSFVIY 457

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++R+R  ++      S R  ++          +     + ++ + + V     +  FA  
Sbjct: 458 FERLRDEVRE---GRSLRSSVETGWARAKHTIIAADSISLLAAIVLYVLAVGGVKGFAFT 514

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           +    ++          P++  +  
Sbjct: 515 LGLTTLIDLLVVFVFTKPLVTLLAR 539


>gi|313830495|gb|EFS68209.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL007PA1]
          Length = 552

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 118/539 (21%), Positives = 210/539 (38%), Gaps = 53/539 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +LVI+  M   +G++                +  P     LGLDLRGG+ + L    +D
Sbjct: 2   IFLVIIIVMYVLMGVM---------------RTWSP----KLGLDLRGGTSVTLTAKTED 42

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTL 117
                   L+     +   +   G+G  S++ + ++ I +S  +       E +     L
Sbjct: 43  GKAPSATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQL 102

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             + V ++  V  K            S + +           +E+S              
Sbjct: 103 GFRMVYAEEPVSQKSPTPGKAKPSAPSALPT-----------VERSASASAAPDASASSK 151

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR-FLRDS 236
             T      +         +      +   T       +                   D 
Sbjct: 152 GGTTSSASQYNEKDPQSAAKMVKAAEEWKPTPEDQKAFEDYKCAKSVDSPGDKPLVTCDR 211

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +     +   V I+G  +  A +         VV++ F+ +G   F + T     K    
Sbjct: 212 ERTMKYLLSPVAITGTQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSPQ 271

Query: 297 VLDGRVLTAPVINQAIPSGK-----------AQISGNFTIETAGILAAMLRAGSLPIKLN 345
                VL   VI+    +G            AQISG+FT  +A  LA +L+ G+LP+  +
Sbjct: 272 NQFAVVLDGKVISSPQLNGNTGTSCPINGGEAQISGHFTQNSAADLANVLKYGALPLSFD 331

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
           I    N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A +
Sbjct: 332 ISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAAM 391

Query: 406 SLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
            LL    G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A  
Sbjct: 392 VLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKARG 451

Query: 462 TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           TI  ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 452 TILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFW 510



 Score = 95.1 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 329 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 387

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 388 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIRE---GRTLRTALQT 444

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 445 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 504

Query: 824 YDWR 827
              R
Sbjct: 505 GRTR 508


>gi|77463352|ref|YP_352856.1| cation efflux transporter [Rhodobacter sphaeroides 2.4.1]
 gi|77387770|gb|ABA78955.1| Cation/multidrug efflux pump, RND superfamily [Rhodobacter
           sphaeroides 2.4.1]
          Length = 1088

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/606 (11%), Positives = 169/606 (27%), Gaps = 40/606 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  +G             + RFP+                  +     
Sbjct: 9   RNPVAPLLGFVLLMVLG-----WQAFNTLPITRFPNIDVPLV---------AVTVDQAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++   ++   + F      E         +  
Sbjct: 55  APAEMETQVTKEIEDAVAGVTGVKNITSTVVDGRSTTVVEFRMEVPTEKAVQDTKDAIDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L    +  ++     +  +I+    +   +     E S  +       +       
Sbjct: 115 IRGDLPGGIEAPIVTRIDVEGQAIMTFAVSSPNMTIE--ELSWFVDDTITRALQGKPGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E DP +L     T  +++      N +       +     +     
Sbjct: 173 RVDRYGGAEREIRVELDPVKLDSFGITAPQVNTQLRATNANLGSGRAELGQGEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++   +   +  F   +    V  S                        L   
Sbjct: 233 DAATAGRLAATTIALPSGRFVRLSDLGEVVDS---------------------YEELRSF 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A+ +   ++           A + P     + +  V    G+   
Sbjct: 272 SRFNGEPVVTFAVFRAKGASEVSVAETVNAVLADLARAHPEVRAELVDDTVFYTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L  +V+   +   +   +A  ++ L+ + T  ++ LLG +L L S   I 
Sbjct: 332 ALHTLLEGALLATLVVLAFLRNWRATFIAAVALPLSAVPTFWVMDLLGFSLNLVSFLAIT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +  +++T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIRMGKSPYRAAIDAADEIGMAVIATSLTIVAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F +T+ +S+L S+  A  I   M  +++R K                   +
Sbjct: 452 GIPGQYFAQFGLTVAISVLFSLLVARLITPMMAAYLMRSKDADEKSHGDGFIMRGYLGLV 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +    +F++    +L   G     +    I L V       L       
Sbjct: 512 RQTLRFRYLTLLAAIGVFAVSMFFMLRIPGSFIPPEDVSRIPLSVELAPGSSLDETDRTT 571

Query: 599 ESLQIG 604
           +++   
Sbjct: 572 QAILER 577



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 79/256 (30%), Gaps = 6/256 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + + R V LS +   ++S +      +            + +    V+    +  V 
Sbjct: 244 TIALPSGRFVRLSDLGEVVDSYEELRSFSRFNGEPVVTFAVFRAKGASEVSVAETVNAVL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P    +  +                 +  + +A L+ +     W     A   
Sbjct: 304 ADLARAHPEVRAELVDDTVFYTYGNYEAALHTLLEGALLATLVVLAFLRNWRATFIAAVA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L    T     L G   NL +  A+    G  V+D +V  + +    +      S   
Sbjct: 364 LPLSAVPTFWVMDLLGFSLNLVSFLAITLATGILVDDAIVEIENI---ARHIRMGKSPYR 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
               + +E     + TS+      +P++   G        F + +A  ++ +   +  I 
Sbjct: 421 AAIDAADEIGMAVIATSLTIVAVFVPVSFMPGIPGQYFAQFGLTVAISVLFSLLVARLIT 480

Query: 817 APILLFIYDWRAKNAR 832
             +  ++   +  + +
Sbjct: 481 PMMAAYLMRSKDADEK 496



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 7/184 (3%)

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E    ++ +EL+      +I+  + +L + I +          + +L L I        
Sbjct: 856  QEAGDAEVQQELMTSFGNAMILGLMLVLTVLILLFRSVLQPFTILFSLPLAIGGVAAALI 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G   ++  +  +L L+G    + +++ D   +        +     I ++ ++     
Sbjct: 916  LTGSALSMPVLIGILMLMGIVTKNAILLVDFAVEMRA---RGMDRFSAILEAGHKRARPI 972

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            V TS+A    +LP A+    GG      A  +  GI+V+   S+ I     L + D    
Sbjct: 973  VMTSIAMSAGMLPSALGVGEGGPFRAPMATAVIGGIIVSTVLSLVIVPSFFLIMDDLSRL 1032

Query: 830  NARI 833
             AR+
Sbjct: 1033 FARL 1036


>gi|254788236|ref|YP_003075665.1| RND transporter HAE1/HME family, permease [Teredinibacter turnerae
           T7901]
 gi|237684852|gb|ACR12116.1| RND transporter, HAE1/HME family, permease protein [Teredinibacter
           turnerae T7901]
          Length = 1039

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/601 (11%), Positives = 171/601 (28%), Gaps = 40/601 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   G+       +    + ++P                  +      
Sbjct: 11  RRPVLALVVNLVIIIAGI-----QAISSLTVRQYPRNDNAVIT---------VNTAYIGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V GF+    +   S          S  Q  + I +    +        ++T  +  
Sbjct: 57  NAQLVRGFITTPLERAISGADGIDYINSSSTQGMSTINVQLELNYDPIKALSEITSKVNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  ++   +          +   +++    + +  + R    ++   E   
Sbjct: 117 VRGDLPPEAEVPIINVQSADSQFASAYLSFSSEIL-EPNQITDYLTRVVQPRLAALEGVQ 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+     T  ++       N           F++ +     
Sbjct: 176 RADVLGGRTFAMRIWLKPDRMAAYGITPVQIRQALTSNNYLAALGNTKGSFIQVNLSANT 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                      D+                ++        +  
Sbjct: 236 DLNTVEEF--------------------RDLVLRSENGALVRLSDVADVELGSESYNEEV 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +    ++        LR G       ++          S   
Sbjct: 276 RYSGMTTTFMGIWPMPNANTLDVMKLVRKELDSLRDGMPKGMDAVIGYDATEYIESSIHE 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T +    +V+ ++F+ +   +  ++   +I +++I  + L+ L G +L L ++  IV
Sbjct: 336 VIKTLSETLLIVIAIIFLFLGSVRSVVIPVMAIPVSLIGAIFLMQLFGFSLNLLTLLAIV 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E +     + QS   +  +G       +    IT +   + +   G
Sbjct: 396 LSVGLVVDDAIVIVENVERHISEGQSPMKAAMLGARELVGPVIAMTITLIAVYLPIGLQG 455

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA T+  ++ IS   A+++   M   +++           +  +   +   
Sbjct: 456 GLTGSLFREFAFTLAGAVTISGIVALTLSPMMSSKLLKEGIEDEGFAKRSASAFNAIRAR 515

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            + I  +  R  G    + F + +  L         +       +  + +     S +  
Sbjct: 516 YLRILDVSLRARGAIYVLWFLLSAGALAMFMSSPKELAPTEDQGIVFIMSEGASSSTIDQ 575

Query: 597 N 597
           +
Sbjct: 576 S 576



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 6/144 (4%)

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            I + I           +  +  + + +   +    LFG   NL  + A++  +G  V+D
Sbjct: 345 LIVIAIIFLFLGSVRSVVIPVMAIPVSLIGAIFLMQLFGFSLNLLTLLAIVLSVGLVVDD 404

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +V+ + +    +  +   S          E +G  +  ++      LP+ + G   GS+
Sbjct: 405 AIVIVENV---ERHISEGQSPMKAAMLGARELVGPVIAMTITLIAVYLPIGLQGGLTGSL 461

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
              FA  +A  + ++   ++ ++ 
Sbjct: 462 FREFAFTLAGAVTISGIVALTLSP 485



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 77/219 (35%), Gaps = 24/219 (10%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYI 684
            S   T+ L+     +          +  +     SR+L R+G   +    ++ + + + +
Sbjct: 802  SGVSTQSLDAALNFLETEAAKILPSDYMVDYTGESRQLRREGNKFVPAFTMALLLIFLVL 861

Query: 685  WIRF-KWYFALGAI-----TTLILDITKTLGFFALFGI---------EFNLTAVAAVLTL 729
              +F  +      +       +      T   F + G+           N+ +   ++TL
Sbjct: 862  AAQFNSFRDPFVILAGSVPLAMFGASIFTFLKFPVPGMGFWTDGFTTTLNIYSQVGLVTL 921

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ +      K+    ++    + ++ +  L   + T++A      P+ + 
Sbjct: 922  IGLVAKNGILLVEFAN---KMQELGLTKMAAVREAASTRLRPILMTTVATVAGHFPLTLV 978

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               G     S  + +  G+ +    ++F+   I + +  
Sbjct: 979  TGAGAEARNSIGLVLVGGMAIGTIFTLFVIPSIYVLLAK 1017


>gi|49474952|ref|YP_032993.1| acriflavin resistance protein d [Bartonella henselae str.
           Houston-1]
 gi|49237757|emb|CAF26950.1| Acriflavin resistance protein d [Bartonella henselae str.
           Houston-1]
          Length = 1044

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/516 (12%), Positives = 149/516 (28%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L +MI   G    L   + +      P                         
Sbjct: 25  RRPVFTFVLNAMIIIAGFAAWLNVDVRELPDVDTPVITIMTA--------------FAGA 70

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  S +        +    ++++ + F         A  +   L  
Sbjct: 71  SAETIDREVTRIIEDAVSRVSGVKTISSTSSFGRSRVEIHFNVGIDLNVAASDIRDALSR 130

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +    L++       +++        +     + +M +  Q +D +   +   
Sbjct: 131 ITYSLPKNADSPLIIKADSNAAAMMYLVVTSPTMSID--DLTMIVDDQIVDALSAVDGVG 188

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D ++L     T A +S                      +     
Sbjct: 189 DVQVDSARTKIFQIDVDQAKLASYGLTVADISRVLADMTTDVPVGSLR------NSKQTL 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +V     ++                                      ++     +     
Sbjct: 243 VVRATARLTTSEAFEQVVLKPH------------------VRLGDVAHVTLSPDLETVIL 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            KAQ +     +    +   L+          +   +     G+   
Sbjct: 285 RINGKTGIGLGIVRKAQSNTLNISQGVRAVVDRLKTVIPSSVHMSIISDDAIFIKGALHE 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I    V++V+F+ +   +  L+   SI + +I T+A + L+G +L + +  G+V
Sbjct: 345 VEVALVIAVLSVILVIFLFLRDIRVTLIPALSIPVALIGTIAAIYLVGFSLNILTFLGLV 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G    +  +  + +T +   V + F  
Sbjct: 405 LATGLVVDDAIVVLENIVRWRNMGFGSRAAAVLGTREVFFAVLATTLTLVAVFVPISFLP 464

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F   + +SIL+S F A+++   +    
Sbjct: 465 GQVGALFREFGFVLAISILLSSFVALTLCPMLASRF 500



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 92/256 (35%), Gaps = 8/256 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+    V L  V     S  +  +  +        L  ++    +++  ++ +  V  +
Sbjct: 258 QVVLKPHVRLGDVAHVTLSPDLETVILRINGKTGIGLGIVRKAQSNTLNISQGVRAVVDR 317

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTL 700
           +  ++P S   +         +  + +  V ++I+ +++++ I          L    ++
Sbjct: 318 LKTVIPSSVHMSIISDDAIFIKGALHEVEVALVIAVLSVILVIFLFLRDIRVTLIPALSI 377

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L G   N+     ++   G  V+D +VV + +   ++        R  
Sbjct: 378 PVALIGTIAAIYLVGFSLNILTFLGLVLATGLVVDDAIVVLENI---VRWRNMGFGSRAA 434

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
                 E     + T++      +P++   G V      F   +A  I++++  ++ +  
Sbjct: 435 AVLGTREVFFAVLATTLTLVAVFVPISFLPGQVGALFREFGFVLAISILLSSFVALTLCP 494

Query: 818 PIL-LFIYDWRAKNAR 832
            +   F+      N +
Sbjct: 495 MLASRFLKGHAESNGK 510



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 93/250 (37%), Gaps = 12/250 (4%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            N+ V LSV+ S  E      +  +           L        A   V ++    + E 
Sbjct: 789  NQYVPLSVIASLHEKAIAPQLKREKRMSAVVLSTNLAPGVVLGSAYQTVQKIAAPLLLEG 848

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
              +  +     +G   S  +I  G     I+ + +L+ +  +F+ +      + T+ L I
Sbjct: 849  NYIVPLGEAATLGETSSNFMIVFG-----IAFVIILLVLAAQFESFVSGFIIMATVPLGI 903

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
               +    L G+  N+ +   ++ LIG    + +++ +      +L     S  + I+++
Sbjct: 904  GCAVISMLLSGVSLNIYSQIGLILLIGVMAKNGILIVEFA---DQLRDKGKSVCEAIEEA 960

Query: 765  INETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             N        T + A +  +P+ +    G     +    +  G+ +A   ++++   + L
Sbjct: 961  ANIRFRPVCMTMICAILGGIPLVLAKGAGAEARIALGWVIVGGLGLATIFTLYVTPVVYL 1020

Query: 822  FIYDWRAKNA 831
            F+  +    +
Sbjct: 1021 FLGRFVRSKS 1030


>gi|260770675|ref|ZP_05879605.1| RND multidrug efflux transporter [Vibrio furnissii CIP 102972]
 gi|260614256|gb|EEX39445.1| RND multidrug efflux transporter [Vibrio furnissii CIP 102972]
 gi|315178569|gb|ADT85483.1| Cation/multidrug efflux protein [Vibrio furnissii NCTC 11218]
          Length = 1040

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/547 (12%), Positives = 160/547 (29%), Gaps = 39/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAISISFLIALLGLQAVF-----KMQVSEYPEMTNTVIT---------VSTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +                +KIT++   +         V      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSQSVLGTSKITVNMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      +++   + + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNEL--DSSQITDYLQRVTNPQLYSINGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++     T   +                          N Y
Sbjct: 173 SIDLYGGLKYALRVWLDPAKMAAFNLTATDVMSVLSA--------------------NNY 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  I    L   +A+        +  +                N+    +      
Sbjct: 213 QSATGQAIGEFVLFNGSADTQVSNVDELKSLVVKTEDGNVTRLGDIANVTLAKSHDTYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAKDVLEILPELQRNMPSNIKMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTIIEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKAGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  S+ +S   A+++   M   +++  +  +     +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKANEKPNRFEQKVHHVLDKMTNR 512

Query: 539 AIQFMRA 545
             + +RA
Sbjct: 513 YEKMLRA 519



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +         L  + +   +             E            + +   + +  + 
Sbjct: 244 VVKTEDGNVTRLGDIANVTLAKSHDTYRASANGQEAVVAAINAAPSANPINIAKDVLEIL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++   +P +   N          E I + I  +I +A+ +L+ I +    +   +  I 
Sbjct: 304 PELQRNMPSNIKMNVLYDSTVAINESIHEVIKTIIEAAVIVLVVITLFLGSFRAVIIPIV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +          G  +NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSLIGVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKAGESPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIIALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +     K  R
Sbjct: 481 SPMMCSKMLKANEKPNR 497



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 76/783 (9%), Positives = 214/783 (27%), Gaps = 36/783 (4%)

Query: 74   SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             DEL+S +        ++ ++ +   ++ A S      +      +    +        N
Sbjct: 237  VDELKSLV--VKTEDGNVTRLGDIANVTLAKSHDTYRASANGQEAVVAAINAAPSANPIN 294

Query: 134  L---LVTTTEKEISIVLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISESTIQRLGSH 187
            +   ++    +    + S   ++ +    +  +    E+I+  I+   I    I      
Sbjct: 295  IAKDVLEILPELQRNMPSNIKMNVLYDSTVAINESIHEVIKTIIEAAVIVLVVITLFLGS 354

Query: 188  RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
               + +P    P  L  +      M F       +    +  +  + D         D+ 
Sbjct: 355  FRAVIIPIVTIPLSLIGVAMVMQAMGFSW--NLMTLLAMVLAIGLVVDDAIVVLENVDRH 412

Query: 248  EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
              +G     A      +   PV+ ++           +     G             A  
Sbjct: 413  IKAGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL---TLAGS 469

Query: 308  INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
            +  +            +               +   L+ +  R                A
Sbjct: 470  VFVSGIIALTLSPMMCSKMLKANEKPNRFEQKVHHVLDKMTNRYEKMLRAVMQHRPVVIA 529

Query: 368  IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
                +   +  +          ++    + ++ T    + L       +    +L     
Sbjct: 530  FAIIVFGSLPVLFKFIPSELAPSEDKGVVMLLGTGPSNANLDYLSNTMADVNKILSDQPE 589

Query: 428  VDSNILVNERIREENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
            V    +             +          S+A  T    N+   I  + +  F    + 
Sbjct: 590  VQFAQVFTGVPDSNQAFGIASMVPWSQREASQAEVTTRVGNLVKDIPGMAVTAFQMPELP 649

Query: 487  GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            G    + +  +I+   A   +  +   ++   +   + +            + I   + +
Sbjct: 650  GAGSGLPIQFVITTPNAFESLFTIATDVLTEVQNSPLFVYSNLDLNYDSATMKINIDKDK 709

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGI---QLGVLANRPVDLSVVRSNLESLQI 603
                G+++     ++  +   G    ID  G        V     ++   + +       
Sbjct: 710  AGAYGVTMQDIGVTLGTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMNNYYVRGAD 769

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI------------ 651
            G           + +   +  P  +   +  +  V    T +                  
Sbjct: 770  GQAVPLGSLINIDVVAEPRALPHFNQLNSATVGAVPSPGTAMGDAIAWFENIADTKLPKG 829

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     +  + ++ L I   L 
Sbjct: 830  YNHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPIVIMVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++        ++  D +  +    L
Sbjct: 890  ALAWGMATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLNRIDAVMAAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++ + 
Sbjct: 948  RPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTIFTLFVLPVIYSYLAEK 1007

Query: 827  RAK 829
               
Sbjct: 1008 HKP 1010


>gi|153807987|ref|ZP_01960655.1| hypothetical protein BACCAC_02273 [Bacteroides caccae ATCC 43185]
 gi|149129596|gb|EDM20810.1| hypothetical protein BACCAC_02273 [Bacteroides caccae ATCC 43185]
          Length = 1034

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/637 (10%), Positives = 166/637 (26%), Gaps = 43/637 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D I       +          +     P +
Sbjct: 135 PSQLMTLCLTSTDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAQPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + +   D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVEGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSTVGQFEDIVVRANANGSIIRLKDVARVSLEASSYNTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        +           +          S      T      LV++V+++ +
Sbjct: 301 MEVAERVKEAMDEISENFPEGLSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGVEHI 420

Query: 442 NRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSIL 497
                 S + +     +   S +  +++      V + F     G   R F +T+ +S+L
Sbjct: 421 METEHLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ-------FMRARFWGV 550
           IS   A+++   M   I++    K  +I        +                  R    
Sbjct: 481 ISTVVALTLSPVMCSLILKPDSGKKKNIIFRKINEWLGVGSNKYVAAVTRTIKHPRRVLS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              ++     +           ++ +G  ++ +       L   R   E           
Sbjct: 541 AFGMVLIAILLIHRIIPTSFLPVEDQGYFKIELELPEGATLERTRIVTERAIAYLEKNPY 600

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            +  +N          +       + +   +  +   
Sbjct: 601 IEYIQNVTGSSPRVGSNQARSELTVILKPWEERKNTS 637



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  I  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPIVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGV--EH 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
            + T  +S  +   K++N      + TS+      +P+  + G  G +   F + +   +
Sbjct: 420 IMETEHLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSV 479

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   ++   +P++  +
Sbjct: 480 LISTVVAL-TLSPVMCSL 496



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVWVCGLENDVYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDKGEDLIQSAIYAARLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    I +     + +Y  ++K  +
Sbjct: 1005 IFAIVFGIILVPFFFVMVYKTKSKILK 1031


>gi|329888441|ref|ZP_08267039.1| acrB/AcrD/AcrF family protein [Brevundimonas diminuta ATCC 11568]
 gi|328846997|gb|EGF96559.1| acrB/AcrD/AcrF family protein [Brevundimonas diminuta ATCC 11568]
          Length = 1029

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/610 (11%), Positives = 172/610 (28%), Gaps = 27/610 (4%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  + L        ++    +  T+ F      E   + V   + GV
Sbjct: 57  PTEMEVQVTRVIEDSIAGLSGVRHIYSNVSDGVSSTTIEFELGTDTERATNDVRNAMSGV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D ++  +        +++      + +     + S  I  +    +       +
Sbjct: 117 RASLPQDMQEPTVQRIDITGDALITYVVRSETMTPE--QISWFIDNEMSRALLALGGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S  +  ++  E DP RL     T A++S      NN+  G    +     +      
Sbjct: 175 VNRSGGVDREIRVELDPQRLSAYGVTAAQVSQALTNVNNNLPGGRVTIAGSERAVRTLGA 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                ++                     +        +         +    +       
Sbjct: 235 AGSVEQL--------------------RETLVPVGDGKNVRLGDLGAVVDKWSEPRRLAR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                          + S     E        +      + +  V   +V     S    
Sbjct: 275 YNGQEAVTFNFLRSREASEVKVSEKVRAEVEKIDEAHPELTIEQVTS-SVKYIEESYLAS 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                + A L +IV+++ +   +  L+A  ++ +++I T A+L  +  +L + ++  + L
Sbjct: 334 LEALILGAVLAVIVVWIFLRDWRATLIAATAMPMSLIPTFAILGPMDQSLNVVTLLALSL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+ VD  I+  E I    R  +  + +           +  +  T +     + F  G
Sbjct: 394 TIGILVDDAIVEIENIVRHMRDGKPPYDAAFEAADEIGLAVVATTGTIIAVFAPVGFMPG 453

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
              + F     L+  IS+F ++ + R +   +  Y    +   +    +           
Sbjct: 454 IIGQFF-KAFALAACISVFFSLVVARLLTPLMAAYMLKHTHHEDKDPFWMGGYLRSLKWC 512

Query: 543 MRARFWGVGISILFSICSI---CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           +R R+    +   F   SI                 +G     +       L      ++
Sbjct: 513 LRHRWIVFIMGGAFLFGSIGLSIAAKMSFEFMSPADEGRAAFQIELPPGSTLHQTDVVVQ 572

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +     +          +        +  A        +        +   +  +I G 
Sbjct: 573 QVTQKLNARPEVTSVYAAIGGQSVNQANVYADMVPKSKRELSQQAFARVMVDEMKQIPGA 632

Query: 660 KISRELIRKG 669
           +I   + ++G
Sbjct: 633 RIRAGIAQQG 642



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 80/220 (36%), Gaps = 7/220 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS--RELIRKGIV 671
                V   +      ++ +V E V+ ++ +I         E V   +    E     + 
Sbjct: 276 NGQEAVTFNFLRSREASEVKVSEKVRAEVEKIDEAHPELTIEQVTSSVKYIEESYLASLE 335

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +I+ A+  +I +WI  + W   L A T + + +  T           N+  + A+   I
Sbjct: 336 ALILGAVLAVIVVWIFLRDWRATLIAATAMPMSLIPTFAILGPMDQSLNVVTLLALSLTI 395

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V  + +   ++         D   ++ +E     V T+        P+    
Sbjct: 396 GILVDDAIVEIENI---VRHMRDGKPPYDAAFEAADEIGLAVVATTGTIIAVFAPVGFMP 452

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           G +IG F    A    ++   S+ +A  +   +  +  K+
Sbjct: 453 G-IIGQFFKAFALAACISVFFSLVVARLLTPLMAAYMLKH 491



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/216 (12%), Positives = 76/216 (35%), Gaps = 7/216 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +    +       D +      + V K  +     + ++       +  +E++    +  
Sbjct: 789  QDRSRIASISAELDGITTGAAGQAVNKLPSVKNLPTGVRQVPAGDAEFIQEMLVGFGIAF 848

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +   + M   + + F  + + +  +  L L I        + G  F+++A+  VL L+G 
Sbjct: 849  LSGILLMYAVLTLLFKSFAYPITIMAALPLAIGGAFIALVISGKSFSMSALIGVLMLMGI 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPMAVW 789
            +  + +++ D +   +    + +S    I  + ++     + T+ A     + +      
Sbjct: 909  AAKNSILLVDYI---IMAEKSGLSRFAAIMDAAHKRARPILMTTFAMGAGMVPIAIGWGA 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                    A+ +  G++ +   S+     +   I D
Sbjct: 966  DVEFRSPMAVAVVGGLISSTFLSLLYIPAVFTIIDD 1001


>gi|313201700|ref|YP_004040358.1| acriflavin resistance protein [Methylovorus sp. MP688]
 gi|312441016|gb|ADQ85122.1| acriflavin resistance protein [Methylovorus sp. MP688]
          Length = 1027

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/603 (11%), Positives = 179/603 (29%), Gaps = 45/603 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ ++  +GL          + +  FP                     LE  
Sbjct: 9   RNPIPAILLFGLLSIVGLFA-----FKTTKVQDFPDIELPAV---------SVTATLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +         +   Q  I++ F   +   +  + V   +  
Sbjct: 55  SPSQLENDVARKIEDSIASVDMVKHITTKILDGQVTISVQFQLEKSVSDAENDVRSAVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D K  ++   T    +IV        +     + S  I  +   ++       
Sbjct: 115 VRSELPADTKDPIVSRITTSGSAIVNYSVTAKDL--DERDLSWLIDNEIAKKMLSVVGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++    DP ++  L  + + +S           G    +  +R       
Sbjct: 173 KFERVGGVDREVRISLDPDKMLALGVSASTVSSELRRMQLESSGGRTDLGGIRQQVRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V++  ++                     D+    +           ++   +A      
Sbjct: 233 TVKEARQL--------------------RDLQLPTLTGTYVTLGQVADVEDTIAERSHIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++    +     + +++      ++     A      S P         NV     +   
Sbjct: 273 LMDGKPVIGFEIT-RSKGESETGLKARVDKAVAEFNDSHPGVKITPAWENVTPVQDNFDG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+ + +   +   +A  ++ L+V+ T   +S+ G T+   ++  + 
Sbjct: 332 SMHLLYEGAVLAVLVVMLFLRDFRATFIAAVALPLSVLPTFIGMSVFGYTINTVTLLSLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +G+ VD  I+  E I       +S   +           +  +    +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIARHLNMGKSPREAAMEAADEIGMAVIATTFALIAVFLPTAFMS 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F  T   +I  S+  A  I   M  +      +K       +   +    +
Sbjct: 452 GIAGKFFKQFGWTAVFAIFASLAVARLITPMMAAYF-----LKPKPEKAETDGRITRRYL 506

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           A+     R  G+ +S+        L+    L  G        + ++       + ++   
Sbjct: 507 ALVAWSVRHRGITVSLALLFFVGSLMLIPLLPKGFVPPADRSMTLVNIELAPGAHLQETA 566

Query: 599 ESL 601
           ++ 
Sbjct: 567 QAA 569



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 75/250 (30%), Gaps = 6/250 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               V L  V    +++                    + +          ++    +  +
Sbjct: 249 TGTYVTLGQVADVEDTIAERSHIALMDGKPVIGFEITRSKGESETGLKARVDKAVAEFND 308

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             P   I         +         +    + +A+L+ +     +     A   L L +
Sbjct: 309 SHPGVKITPAWENVTPVQDNFDGSMHLLYEGAVLAVLVVMLFLRDFRATFIAAVALPLSV 368

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T    ++FG   N   + ++  ++G  V+D +V  + +    +      S R+   ++
Sbjct: 369 LPTFIGMSVFGYTINTVTLLSLALVVGILVDDAIVEIENI---ARHLNMGKSPREAAMEA 425

Query: 765 INETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            +E     + T+ A     LP A      G     F     F I  + + +  I   +  
Sbjct: 426 ADEIGMAVIATTFALIAVFLPTAFMSGIAGKFFKQFGWTAVFAIFASLAVARLITPMMAA 485

Query: 822 FIYDWRAKNA 831
           +    + + A
Sbjct: 486 YFLKPKPEKA 495



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/232 (11%), Positives = 77/232 (33%), Gaps = 14/232 (6%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            K                  V     +         ++        +   +L +   + + 
Sbjct: 793  KRVRNVSIEVELGQRELGAVYAEAMQLPAIKNLPPSVHIVPSSDAENMNDLFQSFGLAMA 852

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I  + +   + + F+ +   L  +  L L I        L G  F++ ++  +L L+G  
Sbjct: 853  IGVLCIYAVLVLLFRDFMQPLTILMALPLSIGGAFVLLLLTGKSFSMPSLIGLLMLMGIV 912

Query: 734  VNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-W 789
              + +++ +     R + +      S  + +  +  +     + T++A    ++P+A+  
Sbjct: 913  SKNSILLVEYAIMARGHKQDGQNPPSRLEALIDACRKRARPIIMTTLAMGAGMVPIAMGL 972

Query: 790  GGSV--IGSFAIPMAFGIVVAASSSIFIAAPIL-------LFIYDWRAKNAR 832
            G         AI +  G++ +   S+ +   +         ++     K ++
Sbjct: 973  GADPSFRSPMAIAVIGGLITSTILSLIVIPAVYTFVDDAEQWLRTRWQKRSK 1024


>gi|269103838|ref|ZP_06156535.1| RND multidrug efflux transporter [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163736|gb|EEZ42232.1| RND multidrug efflux transporter [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 1039

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 74/610 (12%), Positives = 176/610 (28%), Gaps = 44/610 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPDMTNTVVT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S     + IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAIAQADNIDYMTSSSVLGSSTITVNMKLNTDPNAALADILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSGTAVMYIGFTSDELSSS--QITDYLQRVVTPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++     + A +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPAKMGAYNLSAADVMNVLNSNNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V++  E+                      +       +         +    +      
Sbjct: 233 QVKNTDELK--------------------KLVVSTQKGQVIRLGDIAKVTLAKSHDQYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L           +   +  A   S   
Sbjct: 273 TANGQEAVVAAINAAPTANPINIAKGIYQILPELERNMPSTIKMNIMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  LG +  L ++  +V
Sbjct: 333 VIKTIVEAAVIVLVVITLFLGSIRAVVIPVVTIPLSLIGVAMVMQALGFSWNLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
              G   + FA+T+  ++ IS   A+++   M    +   K     +    +    I   
Sbjct: 453 GLTGTLFKEFALTLAGTVFISGIVALTLSPMMCSKMLKADKTPSKFEQVVHNTLERITVR 512

Query: 538 IAIQFMRARFWGVGISIL----FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                         +       F    +   F        +  G + L   A   V+L  
Sbjct: 513 YEKILHGLMTMRPVVIGFAVLVFVSLPLMFKFIPSELAPAEDNGVVVLMANAPSNVNLDY 572

Query: 594 VRSNLESLQI 603
           +++ ++ +  
Sbjct: 573 IQNTMDQVNH 582



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 86/257 (33%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     + + L  +     +             E            + +   + +  + 
Sbjct: 244 VVSTQKGQVIRLGDIAKVTLAKSHDQYRATANGQEAVVAAINAAPTANPINIAKGIYQIL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++   +P +   N          E I + I  ++ +A+ +L+ I +        +  + 
Sbjct: 304 PELERNMPSTIKMNIMYDSTIAINESIHEVIKTIVEAAVIVLVVITLFLGSIRAVVIPVV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +          G  +NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSLIGVAMVMQALGFSWNLLTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   G++   FA+ +A  + ++   ++ +
Sbjct: 421 RAAIIGTREIAVPVIAMTLTLGAVYAPIALMGGLTGTLFKEFALTLAGTVFISGIVALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +       ++
Sbjct: 481 SPMMCSKMLKADKTPSK 497



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 62/154 (40%), Gaps = 6/154 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + + I+F+     L  + T+ L I   L   A      N+ +   ++TLIG 
Sbjct: 853  LLALAIIFLVLAIQFESLRDPLVILITVPLAICGALISLAWGAATMNIYSQVGLITLIGL 912

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++ +  ++       S    D + ++    L   + T+ A    ++P+      
Sbjct: 913  ISKHGILICEVAKEEQLNNKKSR--MDAVIEAARIRLRPILMTTAAMIAGLIPLLYASGA 970

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            G +   S  I +  G+ V    ++F+   I  ++
Sbjct: 971  GAASRFSIGIVIVAGLSVGTLFTLFVLPVIYTYL 1004


>gi|312143208|ref|YP_003994654.1| acriflavin resistance protein [Halanaerobium sp. 'sapolanicus']
 gi|311903859|gb|ADQ14300.1| acriflavin resistance protein [Halanaerobium sp. 'sapolanicus']
          Length = 1026

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/606 (11%), Positives = 163/606 (26%), Gaps = 44/606 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV-LEV 60
           +      ++   +  IG++  L        LD +P               G + +     
Sbjct: 9   KRPVTTSMIILAVILIGIVALL-----NLSLDLYPDITFP----------GAAIVTSYSG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    +   S ++       +     + + + F   R  +     +   + 
Sbjct: 54  VGSEEIENLVTRPIESSVSTVEGVQAVRSTSAMGSSTVVVEFNWGRDMDFAVLDLREQID 113

Query: 121 GVNS-KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            ++   L       L+       + I++   + D +     E   E   Q I ++  +  
Sbjct: 114 MISGTALPDGADNPLVFKFDPAMLPIMVYGVSADDL--DLAELKEETEDQLIPRLERTPG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q      +  ++       RL         +                           
Sbjct: 172 VAQVNLQGGLEREIIVSLKRDRLNHYNLDYETIKGILA--------------------QE 211

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V       G             + + + D++                +    A V  
Sbjct: 212 NVNVSAGDVRQGNRELLVRTIGKFSSIEEIKDVNIPVGERGFVKLSDIAEVEDGFADVQT 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                           +   +     E        ++          V        + S 
Sbjct: 272 ISRTDGKESISLSIQKQTDANTVDVAEAVKEEVEAIKGDYPDYNF-AVAFDQSEFIVDSI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +       I   L +++L++ +   +  L+   ++ +++I T  L+      L + S+ G
Sbjct: 331 NSVSRNAIIGGLLAVLILYLFLRNIRSTLIIATAMPVSIIATFVLMFFADVNLNVISLGG 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + LG+G+ VD+ ++V E I       Q    +   G S     I  S IT ++  + + F
Sbjct: 391 LALGVGMLVDNAVVVLENIYRYRSMGQGRIEAAKEGSSEVGMAIVASTITTVVVFLPIVF 450

Query: 480 F---GGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIP 535
                G   +  A+T+  S+L S+  A++++  +   ++   +K                
Sbjct: 451 VEGLAGELFKDLALTVAFSLLASLMVALTLIPMLSSKYLKVTQKEIERGKTEGKIRKKYR 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +             + +        L            +G I +         LS   
Sbjct: 511 SLLTSALNHRWVIIGILLVSLVGSFALLPRIGFEFIPATDQGDISISYNLPVGTVLSESD 570

Query: 596 SNLESL 601
                +
Sbjct: 571 QAAAKI 576



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 79/252 (31%), Gaps = 10/252 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V     V LS +    +         +    E   L   +    ++V     ++   +
Sbjct: 246 IPVGERGFVKLSDIAEVEDGFADVQTISRTDGKESISLSIQKQTDANTVDVAEAVKEEVE 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            I    P             I   +       +I   +A+LI           L   T +
Sbjct: 306 AIKGDYPDYNFAVAFDQSEFIVDSINSVSRNAIIGGLLAVLILYLFLRNIRSTLIIATAM 365

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + I  T        +  N+ ++  +   +G  V++ VVV + +    +  +      + 
Sbjct: 366 PVSIIATFVLMFFADVNLNVISLGGLALGVGMLVDNAVVVLENI---YRYRSMGQGRIEA 422

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             +  +E     V +++   +  LP+       G +    A+     +  +  +S+ +A 
Sbjct: 423 AKEGSSEVGMAIVASTITTVVVFLPIVFVEGLAGELFKDLALT----VAFSLLASLMVAL 478

Query: 818 PILLFIYDWRAK 829
            ++  +     K
Sbjct: 479 TLIPMLSSKYLK 490



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 82/218 (37%), Gaps = 7/218 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                               V+  +++++ E+      + T     + + E     I    
Sbjct: 794  DQERYAEITADIQGRDLGSVMGEIQQRLEELELPDGYRFTYEGEFEDTIEAFESLIFAFG 853

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++AI + + +  +F+        + T+ + I   +    + G   ++ +   ++TL G  
Sbjct: 854  LAAILVYMVMASQFESLVHPFTIMFTIPMAIIGVIFGLFISGSIISVPSFLGLITLSGIV 913

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +V+ D +    +L     +  + I  + +  L   + T++   +++LP+A     G
Sbjct: 914  VNNAIVMVDFIN---QLRRRGQNKIEAIINAASIRLRPIMMTALTTILALLPIAFGIGEG 970

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                    I +  G+  A   ++F+   +   + D R 
Sbjct: 971  AEATQPMGIVIVSGLSFATFLTLFVIPIVYSLLTDLRE 1008


>gi|312113352|ref|YP_004010948.1| acriflavin resistance protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311218481|gb|ADP69849.1| acriflavin resistance protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 1170

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/676 (10%), Positives = 170/676 (25%), Gaps = 45/676 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVD 61
                 + + +  + +L+A         +   P                   +   L   
Sbjct: 31  PFIARPIATSLLAVAILLASLLAYSLLPISSLPQVDFPV-----------VQVTTRLPGA 79

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +        +  +  ++ITL F  SR        V   +  
Sbjct: 80  NADTMARLVTAPLERQLGQIPSLENMSSTSSEGLSQITLRFMLSRDINAAGQDVQSAISA 139

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +          +++   +          S         ++       
Sbjct: 140 AGGSLPQNLPYPPVYAKVNPSDPPIVT-IALTSQSVSLERLSDFADTLLAPRLSQVAGVG 198

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I   +  + +P +L  L      +       N +    +          G   
Sbjct: 199 RVTVQGNIRPAIRIQANPLQLASLGIALETVRSAIANANVTGSKGLISGPEKSYIVGAND 258

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E                          D+                 +   L       
Sbjct: 259 QLETA--------------------GAYEDVVVAYRNKAPVLLRDVATVVAGLENERVAA 298

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++    +   L           +     G    S   
Sbjct: 299 RYNGTPAVVIDVQRQPSANIVGTVDELKKILPKLVDALPAGVKLDIVADRTGTIRASVEE 358

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+ + +      +VA  ++ L+++    ++   G +L   S+  + 
Sbjct: 359 VQFTLVLSVALVIMVVLLFLRTLSATIVAGITLPLSLMAAFGVMYYAGFSLNNLSLMALT 418

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E +     K +    +   G      TI    ++ +   + L F  
Sbjct: 419 IATGFVVDDAIVMIENVMRYIEKGEKPLVAAYKGAGEIGFTIVSLTLSLIAVFIPLLFME 478

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLSR 530
              G   R FA+T+  +++ SM  A+++   M   +              ++ +    + 
Sbjct: 479 GIVGRLFREFALTLTAAVVTSMIVALTLTPMMAARLLRAPRHGETAPWYSRAFEAPFNAL 538

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             +    +       RF  +  +  F +  +  +            G +     A   V 
Sbjct: 539 LSVYRVTLDWALNARRFMLLVAAATFVLTVVLYIAIPKGFLPDQDTGFLTAETEAAPGVS 598

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              + +    ++       +  G  + +         + A   +    K +         
Sbjct: 599 FERINALQAEVERIIRRDPDVLGVVSVIGVGTTNATPNAAHLALTLKPKTERKATATEIL 658

Query: 651 IQNTEIVGPKISRELI 666
            + TE           
Sbjct: 659 QRLTEATADFPGLRTT 674



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 86/260 (33%), Gaps = 10/260 (3%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +  G N  ++  G  +  V+A R     ++R     +   +             V +  Q
Sbjct: 252 YIVGANDQLETAGAYEDVVVAYRNKAPVLLRDVATVVAGLENERVAARYNGTPAVVIDVQ 311

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK----GIVGVIISAIAM 680
              S      ++ +KK + ++V          +    +  +           V+  A+ +
Sbjct: 312 RQPSANIVGTVDELKKILPKLVDALPAGVKLDIVADRTGTIRASVEEVQFTLVLSVALVI 371

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++ +         + A  TL L +    G     G   N  ++ A+    G+ V+D +V+
Sbjct: 372 MVVLLFLRTLSATIVAGITLPLSLMAAFGVMYYAGFSLNNLSLMALTIATGFVVDDAIVM 431

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSF 797
            + +   M+             K   E     V  +++     +P+    G V      F
Sbjct: 432 IENV---MRYIEKGEKPLVAAYKGAGEIGFTIVSLTLSLIAVFIPLLFMEGIVGRLFREF 488

Query: 798 AIPMAFGIVVAASSSIFIAA 817
           A+ +   +V +   ++ +  
Sbjct: 489 ALTLTAAVVTSMIVALTLTP 508



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 69/178 (38%), Gaps = 4/178 (2%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
               ++ V    + I   S+I  +           +    + ++ + + + I + + ++ +
Sbjct: 880  DAAVQAVTDAQSRIALPSSIVGSYTGAAAEFNASLANQPLLILAAVVTIYIILGVLYESF 939

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                  +TTL       L    + G+EF+  A+  ++ L+G    + +++ D        
Sbjct: 940  IHPFTILTTLPSAGIGALLALEILGMEFSFIALIGIILLMGIVKKNAIIMIDFALD--AE 997

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             T  ++  D I ++        + T++AA +  LP+ + G        +P+   I+  
Sbjct: 998  RTRGLAPFDAIREACLLRFRPIMMTTVAALLGALPLVI-GSGPGSELRMPLGVTIIGG 1054


>gi|167764082|ref|ZP_02436209.1| hypothetical protein BACSTE_02465 [Bacteroides stercoris ATCC
           43183]
 gi|167698198|gb|EDS14777.1| hypothetical protein BACSTE_02465 [Bacteroides stercoris ATCC
           43183]
          Length = 1138

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/521 (13%), Positives = 146/521 (28%), Gaps = 44/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +GL+      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGLI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +     N   +I++ F      +  A  V  
Sbjct: 51  QGANAQTVLNSVIAPLEDQINGVENMMYMTSSASNNGSAEISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +++     ++                I ++   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLMVFSIYDEKDQYDIEFLENYANINLIPEVKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q       ++      N       FG    R + 
Sbjct: 171 NGVGDATVLG-QDYSMRIWLKPDVMAQYKLIPNDVAGALAEQNIEAAPGQFGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                +I       
Sbjct: 227 SFQYTIRYKGRL-------------QQPEEFENIVIKALENGEVLRLKDIADIELGRLSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     +               + +        
Sbjct: 274 NFNNTVNGHKAVSCIVYQMAGTNATQTISDLEEVLGKASETLPSGLKINIAQSANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVIKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLQLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   V 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARTASIDAMSELGGAIISITLVMMSVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F G   G   R F +TM ++I  S   A+++  A+    
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGFSALNALTLSPALCAIF 494



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/310 (10%), Positives = 84/310 (27%), Gaps = 28/310 (9%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                       +         ++     N   + +    + V     +       +++ +
Sbjct: 816  MQGYFGGLYASNFNSFGKMYRVMIQAEPNATKNLESLSSIKVRNGNEMAPITQFVSVKKV 875

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               DI  +        ++        S      +  V K+             E+ G   
Sbjct: 876  YGPDIISRFNLYTSMKVMVAPASGYTSGQALAAIAEVAKENLPAG-----FAYELGGMAR 930

Query: 662  SRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALF 714
                      G+I     + +Y+ +      +   L  + +    L+       G  +L 
Sbjct: 931  EEAETSGSTTGLIFVLCFVFVYLLLSAQYESYILPLSVLLSVPFGLLGSFLFVSGIGSLG 990

Query: 715  GIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             I      +           A++ L+G    + +++ +     +      +S        
Sbjct: 991  NIPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFA---LDRRKMGMSITWAAVLG 1047

Query: 765  INETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + TS+A  + +LP+      G +   +       G+++     IFI   + +
Sbjct: 1048 AAARLRPILMTSLAMIVGLLPLMFASGAGANGNRTLGTSAIGGMLIGMILQIFIVPALFV 1107

Query: 822  FIYDWRAKNA 831
                 + K  
Sbjct: 1108 AFQYLQEKVK 1117



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 6/211 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      LE V  K +E +P     N            I + I  +I + I
Sbjct: 288 IVYQMAGTNATQTISDLEEVLGKASETLPSGLKINIAQSANDFLFASIHEVIKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLQLIGFSINLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R     +++E  G  +  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SARTASIDAMSELGGAIISITLVMMSVFVPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F + MA  I  +A +++ ++  +      
Sbjct: 466 RQFGLTMAIAIGFSALNALTLSPALCAIFLK 496


>gi|317402023|gb|EFV82621.1| hypothetical protein HMPREF0005_00415 [Achromobacter xylosoxidans
           C54]
          Length = 1039

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/564 (11%), Positives = 164/564 (29%), Gaps = 30/564 (5%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 D + GF+     +  + ++       S  Q ++ IT+    +        +V  
Sbjct: 51  YPGASPDLMQGFVTQPIAQSVATVEGIDYLSSSSTQGRSVITVRMKLNADSNKAMTEVMA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  +L  D    +LV +  +  ++     +           +  + R    Q+   
Sbjct: 111 KVNEVKYRLPQDAYDPVLVKSAGEATAVAYVGFSSS--TMSLPALTDYLSRVVQPQLSSI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +            + +    DP RL     +  +++      N           ++  + 
Sbjct: 169 DGVASVELYGGQKLAMRVWLDPDRLAARGISAGELAEALRQNNVQAAPGQAKGLYVVSNI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                + +  E                      D+     G           +    A  
Sbjct: 229 KVNTDLVNVAEF--------------------RDMVVKREGDAIVRLGDVATVELGAAST 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               ++          +     +    ++    L   ++    P     V          
Sbjct: 269 DSSGLMDGEPAVYFGLNATPVGNPLVIVKRLNELLPNIKQNLPPGTSVQVPFELARFISA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V+ V+F+ +   +  L+   +I L+++   A+++L G ++ L ++
Sbjct: 329 SIDGVVHTLMEAIVIVVAVIFLCLGSLRAVLIPVVTIPLSMLGGAAIMALFGFSVNLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +     + +S   +  +G       +    IT       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENVHRHIEEGKSPVRAALIGAREVAGPVIAMTITLAAVYAPI 448

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
              G   G   + FA T+  ++++S   A+++   M  F+           +  +     
Sbjct: 449 GLMGGLTGSLFKEFAFTLAGAVVVSGVIALTLSPVMSSFLLNSHVSEGWMARRAEHFFNR 508

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   + +        G+    + +               ++ +  +   + + +  
Sbjct: 509 LGQAYGRLLDVSLHHRWVTGLVAVAVMASLPFLYNAAQRELAPVEDQSTVLTAIKSPQHA 568

Query: 590 DLSVVRSNLESLQIGDISFQNFDG 613
           ++  V    +       +     G
Sbjct: 569 NIDYVEKFGKKWDDVMATLPEQKG 592



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 82/244 (33%), Gaps = 12/244 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       + +  ++ +S  + D     + G     V              +L  +K+ +
Sbjct: 253 VRLGDVATVELGAASTDSSGLMDGEPAVYFGLNATPVGNPLVIVKR--LNELLPNIKQNL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                +                ++   +  ++I    + + +         L  + T+ L
Sbjct: 311 PPGTSVQVPFELARFISASIDGVVHTLMEAIVIVVAVIFLCLG---SLRAVLIPVVTIPL 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +       ALFG   NL  + A++  IG  V+D +VV + +    +      S      
Sbjct: 368 SMLGGAAIMALFGFSVNLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGKSPVRAAL 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               E  G  +  ++       P+ + G   GS+   FA  +A  +VV+   ++   +P+
Sbjct: 425 IGAREVAGPVIAMTITLAAVYAPIGLMGGLTGSLFKEFAFTLAGAVVVSGVIAL-TLSPV 483

Query: 820 LLFI 823
           +   
Sbjct: 484 MSSF 487



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 84/250 (33%), Gaps = 10/250 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +  V +     + +      S+ +       F+       +    PG ++         +
Sbjct: 762  RYYVKSASGAQVPLSNIVSVSMGVEPNKLTQFNQLNAATFQAIPMPGVTMGDAVQFLTRQ 821

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
             +          Q+      +    L    ++  I + I + + +  +++        + 
Sbjct: 822  AQELPAGFSYDWQSDARQFSQEGSAL----MITFIFAIIVIYLVLAAQYESLRDPFIILV 877

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            ++ L I   L   AL     N+     ++TLIG      +++ +   +     +  +  R
Sbjct: 878  SVPLSICGALIPLALGMATINIYTQIGLVTLIGLISKHGILMVEFANE--MQVSHGLDRR 935

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFI 815
              ++ +    L   + T+ A  + ++P+    G+   S     + +  G++V    ++F+
Sbjct: 936  SAMEHAARIRLRPILMTTAAMVVGLIPLLFASGAGAHSRYSLGLVIVVGMLVGTLFTLFV 995

Query: 816  AAPILLFIYD 825
               +   +  
Sbjct: 996  LPTVYTVLAR 1005


>gi|255065772|ref|ZP_05317627.1| multiple transferable resistance system protein MtrD [Neisseria
           sicca ATCC 29256]
 gi|255050090|gb|EET45554.1| multiple transferable resistance system protein MtrD [Neisseria
           sicca ATCC 29256]
          Length = 446

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/462 (10%), Positives = 129/462 (27%), Gaps = 40/462 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I  +G++      +    + ++PS                  + L    
Sbjct: 8   RPIFAWVIAIFIIALGVI-----GIRSLPVSQYPSVAAPT-------------ITLTATY 49

Query: 63  DDFVNGFLQ-MYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   +       ++L+F     ++    +V  
Sbjct: 50  PGASAQVMEDSVLAVIERSMNGVEGLDYMSTSANSSGSGTVSLTFTPETNEDLAQVEVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  V S L    ++  +  +  +E  +++   + D  +    E +    R  I ++   
Sbjct: 110 KLSEVLSNLPAAVQQYGVTVSKARENFLMIVMLSSD--VQSTEEMNDYAQRNIIPELQRI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +          +    DP +L+    + A ++      N        G     +  
Sbjct: 168 DGVGKVQLFGAQR-AMRIWVDPKKLQNYNLSFATVTNALATQNIQISAGSIGSLPAVEGQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V  + ++                 +    I          +      +   +   
Sbjct: 227 TISATVTAEGQL-------------KTAEEFGNIILVSNTDGSNVYLKDVAKVSLGMEDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +   T         +L+                     
Sbjct: 274 SSSTRLNGVNTTGMAVMLSNSGNAMATATAVKEKMEVLKKYFPQGMSWKTPYDTSKFVKI 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   ++ L+    + ++++   A +S +G ++ + ++
Sbjct: 334 SIEKVLSTLGEAVLLVFVVMFLFLQNIRYTLIPTIVVPISLLGGFAFISYMGMSINVLTM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSR 458
             +VL IG+ VD  I+V E +      +      +    + R
Sbjct: 394 FAMVLVIGIVVDDAIVVVENVERIMATEGLPPKAATKKRWVR 435



 Score = 39.3 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 20/158 (12%), Positives = 56/158 (35%), Gaps = 1/158 (0%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F   I +       V L  V      ++    S +        +  +    G+++A    
Sbjct: 244 FGNIILVSNTDGSNVYLKDVAKVSLGMEDYSSSTRLNGVNTTGMAVMLSNSGNAMATATA 303

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
           ++   + + +  P      T     K  +  I K +  +  + + + + +++  +   + 
Sbjct: 304 VKEKMEVLKKYFPQGMSWKTPYDTSKFVKISIEKVLSTLGEAVLLVFVVMFLFLQNIRYT 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           L     + + +     F +  G+  N+  + A++ +IG
Sbjct: 364 LIPTIVVPISLLGGFAFISYMGMSINVLTMFAMVLVIG 401


>gi|298501309|ref|ZP_07011105.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|297539969|gb|EFH76034.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
          Length = 1036

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/597 (12%), Positives = 174/597 (29%), Gaps = 42/597 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAIF-----KMQVREYPEMTNTVIT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      +++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNELASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  + A +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++                      +                 +    +      
Sbjct: 233 QVSTVEDLE--------------------SLVVKAEKGTVTRLGDIAKVTLAKSHDTYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 273 SANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLIP 535
              G   + FA+T+  S+ +S   A+++   M   +           + ++ L       
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTAR 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               +  + A    V         S+ +LF    +     +    + ++   P + +
Sbjct: 513 YERMLTAVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNAN 569



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 80/791 (10%), Positives = 211/791 (26%), Gaps = 36/791 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                     ++L S +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 229  SADTQVSTVEDLESLV--VKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 286

Query: 126  LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                   N+     E    +   + S   ++ +    +  +    E+I+  ++   I   
Sbjct: 287  APSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLV 346

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 347  VITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 404

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 D+    G     A      +   PV+ ++           +     G        
Sbjct: 405  VLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL 464

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                +  V      +    +               L+   L  ++    ER + A +   
Sbjct: 465  TLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHR 524

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
             +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 525  PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKIL 584

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                 +            N+     +    S   +     +    T+        +    
Sbjct: 585  SDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTA-- 642

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             F        G  + +   I            A  +          +  +    F     
Sbjct: 643  -FQMPELPGAGSGLPIQFVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATM 701

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
             I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 702  KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 761

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
            S       G +         + +   +  P  +   +  +  V    T +          
Sbjct: 762  SYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENL 821

Query: 652  --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 822  ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            LDI   L   A      N+ +   ++TL+G      +++ +  ++        +S  + +
Sbjct: 882  LDICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIEAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
              +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 940  MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 999

Query: 819  ILLFIYDWRAK 829
            I  ++ +    
Sbjct: 1000 IYSYLAEKHKP 1010



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 83/244 (34%), Gaps = 7/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +     +             E            + +   + +  +  ++ + +P +   
Sbjct: 257 DIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEM 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N          E I + I  ++ +A+ +L+ I +        L  I T+ L +       
Sbjct: 317 NVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G  +NL  + A++  IG  V+D +VV + +    +      S          E    
Sbjct: 377 QMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGTREIAIP 433

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   +     
Sbjct: 434 VIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANE 493

Query: 829 KNAR 832
              +
Sbjct: 494 APNK 497


>gi|153827372|ref|ZP_01980039.1| multidrug resistance protein, putative [Vibrio cholerae MZO-2]
 gi|149738721|gb|EDM53063.1| multidrug resistance protein, putative [Vibrio cholerae MZO-2]
          Length = 1036

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/597 (12%), Positives = 174/597 (29%), Gaps = 42/597 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAIF-----KMQVREYPEMTNTVIT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      +++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNELASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  + A +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++                      +                 +    +      
Sbjct: 233 QVSTVEDLE--------------------SLVVKAEKGTVTRLGDIAKVTLAKSHDTYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 273 SANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLIP 535
              G   + FA+T+  S+ +S   A+++   M   +           + ++ L       
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTAR 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               +  + A    V         S+ +LF    +     +    + ++   P + +
Sbjct: 513 YERMLTAVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNAN 569



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 83/244 (34%), Gaps = 7/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +     +             E            + +   + +  +  ++ + +P +   
Sbjct: 257 DIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEM 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N          E I + I  ++ +A+ +L+ I +        L  I T+ L +       
Sbjct: 317 NVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G  +NL  + A++  IG  V+D +VV + +    +      S          E    
Sbjct: 377 QMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGTREIAIP 433

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   +     
Sbjct: 434 VIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANE 493

Query: 829 KNAR 832
              +
Sbjct: 494 APNK 497



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 79/791 (9%), Positives = 210/791 (26%), Gaps = 36/791 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                     ++L S +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 229  SADTQVSTVEDLESLV--VKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 286

Query: 126  LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                   N+     E    +   + S   ++ +    +  +    E+I+  ++   I   
Sbjct: 287  APSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLV 346

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 347  VITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 404

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 D+    G     A      +   PV+ ++           +     G        
Sbjct: 405  VLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL 464

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                +  V      +    +               L+   L  ++    ER + A +   
Sbjct: 465  TLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHR 524

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
             +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 525  PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKIL 584

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                 +            N+     +    S   +     +    T+        +    
Sbjct: 585  SDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTA-- 642

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             F        G  + +   I            A  +          +  +    F     
Sbjct: 643  -FQMPELPGAGSGLPIQFVITTPSNFESLFTIATDVLTEAKANPMFVYSDLDLNFDSATM 701

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
             I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 702  KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 761

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
            S       G +         + +   +  P  +   +  +  V    T +          
Sbjct: 762  SYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENL 821

Query: 652  --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 822  ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   A      N+ +   ++TL+G      +++ +  ++        +S  + +
Sbjct: 882  LAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIEAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
              +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 940  MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 999

Query: 819  ILLFIYDWRAK 829
            I  ++ +    
Sbjct: 1000 IYSYLAEKHKP 1010


>gi|289428327|ref|ZP_06430014.1| protein-export membrane protein SecD [Propionibacterium acnes J165]
 gi|289158476|gb|EFD06692.1| protein-export membrane protein SecD [Propionibacterium acnes J165]
 gi|313764318|gb|EFS35682.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL013PA1]
 gi|313772299|gb|EFS38265.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL074PA1]
 gi|313792004|gb|EFS40105.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL110PA1]
 gi|313807657|gb|EFS46144.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL087PA2]
 gi|313810164|gb|EFS47885.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL083PA1]
 gi|313812808|gb|EFS50522.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL025PA1]
 gi|313815856|gb|EFS53570.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL059PA1]
 gi|313818694|gb|EFS56408.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL046PA2]
 gi|313820464|gb|EFS58178.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL036PA1]
 gi|313822730|gb|EFS60444.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL036PA2]
 gi|313825336|gb|EFS63050.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL063PA1]
 gi|313827631|gb|EFS65345.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL063PA2]
 gi|313833531|gb|EFS71245.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL056PA1]
 gi|313838867|gb|EFS76581.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL086PA1]
 gi|314915308|gb|EFS79139.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL005PA4]
 gi|314918141|gb|EFS81972.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL050PA1]
 gi|314920218|gb|EFS84049.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL050PA3]
 gi|314925073|gb|EFS88904.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL036PA3]
 gi|314955642|gb|EFT00044.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL027PA1]
 gi|314958038|gb|EFT02141.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL002PA1]
 gi|314960390|gb|EFT04492.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL002PA2]
 gi|314967474|gb|EFT11573.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL037PA1]
 gi|314973495|gb|EFT17591.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL053PA1]
 gi|314976175|gb|EFT20270.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL045PA1]
 gi|314978566|gb|EFT22660.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL072PA2]
 gi|314983803|gb|EFT27895.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL005PA1]
 gi|314987984|gb|EFT32075.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL005PA2]
 gi|314989794|gb|EFT33885.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL005PA3]
 gi|315077876|gb|EFT49927.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL053PA2]
 gi|315080501|gb|EFT52477.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL078PA1]
 gi|315084172|gb|EFT56148.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL027PA2]
 gi|315085515|gb|EFT57491.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL002PA3]
 gi|315088428|gb|EFT60404.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL072PA1]
 gi|315096042|gb|EFT68018.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL038PA1]
 gi|315098670|gb|EFT70646.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL059PA2]
 gi|315101327|gb|EFT73303.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL046PA1]
 gi|315108545|gb|EFT80521.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL030PA2]
 gi|327326322|gb|EGE68112.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL096PA2]
 gi|327330393|gb|EGE72142.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL097PA1]
 gi|327331803|gb|EGE73540.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL096PA3]
 gi|327443580|gb|EGE90234.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL013PA2]
 gi|327445784|gb|EGE92438.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL043PA2]
 gi|327448233|gb|EGE94887.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL043PA1]
 gi|327450646|gb|EGE97300.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL087PA3]
 gi|327453277|gb|EGE99931.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL092PA1]
 gi|327454016|gb|EGF00671.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL083PA2]
 gi|328753274|gb|EGF66890.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL025PA2]
 gi|328753335|gb|EGF66951.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL020PA1]
 gi|328754064|gb|EGF67680.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL087PA1]
 gi|328760716|gb|EGF74282.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL099PA1]
          Length = 552

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 118/540 (21%), Positives = 208/540 (38%), Gaps = 55/540 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +LVI+  M   +G++                +  P     LGLDLRGG+ + L    +D
Sbjct: 2   IFLVIIIVMYVLMGVM---------------RTWSP----KLGLDLRGGTSVTLTAKTED 42

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTL 117
                   L+     +   +   G+G  S++ + ++ I +S  +       E +     L
Sbjct: 43  GKAPSATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQL 102

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME--IIRQRIDQIG 175
             + V ++  V  K            S + +        +     +           Q  
Sbjct: 103 GFRMVYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDASASSKGGTTSSASQYN 162

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +               P  +D                       S            D
Sbjct: 163 EKDPQSAAKMVKAAEEWKPTPEDQKAFEDY------------KCAKSVDSPGDKPLVTCD 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +     +   V I+G  +  A +         VV++ F+ +G   F + T     K   
Sbjct: 211 RERTMKYLLSPVAITGTQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSP 270

Query: 296 VVLDGRVLTAPVINQAIPSGK-----------AQISGNFTIETAGILAAMLRAGSLPIKL 344
                 VL   VI+    +G            AQISG+FT  +A  LA +L+ G+LP+  
Sbjct: 271 QNQFAVVLDGKVISSPQLNGNTGTSCPINGGEAQISGHFTQNSAADLANVLKYGALPLSF 330

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
           +I    N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A 
Sbjct: 331 DISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAA 390

Query: 405 LSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           + LL    G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A 
Sbjct: 391 MVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKAR 450

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            TI  ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 451 GTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFW 510



 Score = 94.8 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 329 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 387

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 388 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIRE---GRTLRTALQT 444

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 445 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 504

Query: 824 YDWR 827
              R
Sbjct: 505 GRTR 508


>gi|294507182|ref|YP_003571240.1| acriflavine resistance protein (cation efflux system) [Salinibacter
           ruber M8]
 gi|294343510|emb|CBH24288.1| acriflavine resistance protein (cation efflux system) [Salinibacter
           ruber M8]
          Length = 1043

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/690 (12%), Positives = 184/690 (26%), Gaps = 60/690 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      + + ++  +G +           +D  P                   + +   
Sbjct: 9   RRPVATTMSFLVVIVVGAVS-----FYYLPVDLLPEIEYP-------------QVSVTTS 50

Query: 62  EDDFVNGFLQMYSDE----LRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             +     ++    +      S +           +  +++ + F         A+ V  
Sbjct: 51  YPNVGPEEMEQIITDPVANAVSSVSNVERITSQSSEGSSRVNMEFGQGTDLNAAANDVRA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  +   L V+ +   +         IV                +  + R    Q    
Sbjct: 111 ALDRIRDDLPVEAEPPSIRKFDPNSQEIVSISVES---RRDLPSLTRLMERNLSKQFEQI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I  Q+    +  RL     + A++       N +  G            
Sbjct: 168 PGVGTINVQGGIYRQVQVNLNRERLMSYDLSAAQVQQSISSSNVALPGGNVKEGLKDLYV 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q   E   EI    +                                   +      +
Sbjct: 228 RTQGEYESLDEIRNTVVTT--------------------ANGTPVRVQDVAEVIDGYEDL 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L    + +     ++  +              +      + L +V          
Sbjct: 268 GRIAELNGIPVLRLDIQKRSGANTVSVANRVREEVKRVNQTRSDLNLTVVS-DQSDFIRK 326

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  + +    + L ++VL++ +  G    +   SI +++I T ALL     TL   + 
Sbjct: 327 SINNVQSSAIWGSLLAILVLYLFLRNGSTTFIIALSIPISIIATFALLFFNDLTLNQMTF 386

Query: 418 AGIVLGIGLAVDSNILVNER-IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+ LG+GL VD+ I+V E  IR+     +S+  +  MG       I  S IT  +  + 
Sbjct: 387 GGLALGVGLIVDNAIVVLENIIRQREENGRSLREAASMGTREVAGAILASTITTSVIFLP 446

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           L F         +  A+ +  ++  S+  A+++V  M                       
Sbjct: 447 LVFARTTTASLFQSLALVVVFALACSLLVALTLVPMMASRFLTVDAGEGDAAEDTSKSWF 506

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                S      D I     R          L     +   +             I + +
Sbjct: 507 QRAFASLENQYSDAIRAALQRRWLVFGATGALLVGALLLWPYVSVELAPQTDANQIDVDM 566

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +  +++VV   LE L+         D  +NF  ++Q    +   Q +  E       
Sbjct: 567 QMAQGTNIAVVMKYLEELEQRVQPMLPQDEVENFAKQVQPWGAEVEVQLKSAEERSINTF 626

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +      +    V     R   + G+  +
Sbjct: 627 ALADSIRSEVVGKVPGADLRVSAQSGLWIL 656



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 93/246 (37%), Gaps = 6/246 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V    P   SV  S L + Q G    +        +  +            V+   ++K+
Sbjct: 774  VSIQTPDGNSVPLSTLVTTQRGRGPTEIQRINGQRVTYISANLTSDAVLGEVVNQARQKV 833

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
            + +        T     +  ++     ++ + ++ + + + +  +F ++   L  + ++ 
Sbjct: 834  STLSLPEGFSVTFGGQYREQQKAQTDFLIAIFMALVLIYMVMAGQFERFLDPLIVMFSVP 893

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L +   L      G   N+ +V   + LIG  VN+ +V+ D +  N+      +   + +
Sbjct: 894  LVLVGVLPTLVFTGTTVNIQSVMGFVMLIGIVVNNAIVLVDYI--NLMRRDRDLPLTEAV 951

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + T++   + ++P+A+    G  +  + A  +  G+  +   ++ +   
Sbjct: 952  AEAGRLRLRPILMTTLTTVLGLVPLALGIGAGAEIQAALARVVIGGLTASTLITLLLIPV 1011

Query: 819  ILLFIY 824
              + + 
Sbjct: 1012 AYVSLE 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 80/253 (31%), Gaps = 11/253 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              +      PV +  V   ++  +      +        L   +    ++V+    +  
Sbjct: 241 NTVVTTANGTPVRVQDVAEVIDGYEDLGRIAELNGIPVLRLDIQKRSGANTVSVANRVRE 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             K++ +      +         I + +       +  S +A+L+               
Sbjct: 301 EVKRVNQTRSDLNLTVVSDQSDFIRKSINNVQSSAIWGSLLAILVLYLFLRNGSTTFIIA 360

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTS 754
            ++ + I  T        +  N      +   +G  V++ +VV + +   R+        
Sbjct: 361 LSIPISIIATFALLFFNDLTLNQMTFGGLALGVGLIVDNAIVVLENIIRQREE-----NG 415

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF-AIPMAFGIVVAASSSI 813
            S R+       E  G  + +++   +  LP+     +    F ++ +   +V A + S+
Sbjct: 416 RSLREAASMGTREVAGAILASTITTSVIFLPLVFARTTTASLFQSLALV--VVFALACSL 473

Query: 814 FIAAPILLFIYDW 826
            +A  ++  +   
Sbjct: 474 LVALTLVPMMASR 486


>gi|258648392|ref|ZP_05735861.1| HAE1 efflux family protein [Prevotella tannerae ATCC 51259]
 gi|260851562|gb|EEX71431.1| HAE1 efflux family protein [Prevotella tannerae ATCC 51259]
          Length = 1068

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/562 (12%), Positives = 160/562 (28%), Gaps = 48/562 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +  +        + ++PS  P               + +    
Sbjct: 9   RPVLSTVISILIVLLGAIGLI-----SLPITQYPSIAPPT-------------VSVSTSY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   EG+   +          I+++F      +  A  V  
Sbjct: 51  MGANAQTVLNSVIIPLEEQINGVEGLDYMTSSATNTGTATISITFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  ++T   +   +++     +                 I Q+   
Sbjct: 111 CVNKAQGLLPAEVTKVGVITQKRQSSMLMVFSLADESGKYDQQFLENYAKINVIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   + +        +    DP+++         ++      N        G    R++ 
Sbjct: 171 QGVGEAMVMGA-DYSMRIWLDPTKMALHHLMPTDITSVLAQQNIEAAPGTVGE---RENQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +  K  +S                +    I                 +    +  
Sbjct: 227 TFMYTLRYKGRLSTES-------------EFENMIIKALPNGEVLRVKDVARVELGRSTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   T++         +         +V +        
Sbjct: 274 SFSGKVNGHNSVTCIVFQMAGTNATETVQNIQKTLEESQKSLPSGIKIVVSQNVNDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV  V+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIEEVIKTLFEAFILVFFVVYIFLQDLRSTLIPTIAIPVALIGTFFVLYLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +           I    +  +   + 
Sbjct: 394 NALVLAIAIVVDDAIVVVEGVHAKLDQGYKSSRKASIDAMRELGGAIVSITLVMMAVFIP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLS 529
           + F  G +    R F ITM ++I  S   A+++  A+           K+ KS  I+   
Sbjct: 454 VSFISGTSGIFYRQFGITMAIAIGFSALNALTLSPALCAIFLKPKNEDKQPKSTFISRFH 513

Query: 530 RFFLIPDCIAIQFMRARFWGVG 551
           + F       +   + R     
Sbjct: 514 KSFNAHYDALLGKYKKRVLFFI 535



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 71/231 (30%), Gaps = 20/231 (8%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N    +      +   T    +   + T    L    + E  G     +        ++ 
Sbjct: 817  NMYTSISVNGNPADGYTSGQALQAIQETADKYLPLGYSFEYSGLSREEQSSSGSTTAIVF 876

Query: 676  SAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV--------- 723
                + IY+ +      +   +  + ++   +  +  F  + G   ++  +         
Sbjct: 877  LLCFVFIYLLLSAQYESYLLPMAVLLSVPFGLAGSFLFIQMMGGFNSIIPIFGAASNNIY 936

Query: 724  --AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
               A++ LIG    + +++ +     +      +S            L   + TS+A  +
Sbjct: 937  TQIALIMLIGLLAKNAILITEFA---LDRRKMGMSITWAAVLGAGARLRPILMTSLAMIV 993

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +LPM      G +   S       G+++     IFI   + +     + K
Sbjct: 994  GLLPMMFSFGVGANGNRSLGTTAIGGMLIGMICQIFIVPALFVAFEYLQEK 1044



 Score = 46.6 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 60/494 (12%), Positives = 144/494 (29%), Gaps = 29/494 (5%)

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL---TLALLSLLGATLTLPSIA 418
                 ++ G + ++   I  Y              +     T+    ++     +  + 
Sbjct: 15  VISILIVLLGAIGLISLPITQYPSIAPPTVSVSTSYMGANAQTVLNSVIIPLEEQINGVE 74

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAY----------STIFD 465
           G+      A ++       I    ++      +   +    ++A             I  
Sbjct: 75  GLDYMTSSATNTGTAT---ISITFKQGTDPDMAAVNVQNCVNKAQGLLPAEVTKVGVITQ 131

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
              ++++    L    G   + F        +I     +  V   M+    Y     +D 
Sbjct: 132 KRQSSMLMVFSLADESGKYDQQFLENYAKINVIPQVQRVQGVGEAMVMGADYSMRIWLDP 191

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             ++   L+P  I     +        ++        +                 + + A
Sbjct: 192 TKMALHHLMPTDITSVLAQQNIEAAPGTVGERENQTFMYTLRYKGRLSTESEFENMIIKA 251

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
               ++  V+              +     +  V            T  ++ ++K + E 
Sbjct: 252 LPNGEVLRVKDVARVELGRSTYSFSGKVNGHNSVTCIVFQMAGTNATETVQNIQKTLEES 311

Query: 646 VPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
                     +V   ++  L   I + I  +  + I +   ++I        L     + 
Sbjct: 312 QKSLPSGIKIVVSQNVNDFLFASIEEVIKTLFEAFILVFFVVYIFLQDLRSTLIPTIAIP 371

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T     L G   NL  + A++  I   V+D +VV + +   +       S R   
Sbjct: 372 VALIGTFFVLYLIGFSINLLTLNALVLAIAIVVDDAIVVVEGVHAKLDQGYK--SSRKAS 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAP 818
             ++ E  G  V  ++      +P+  + G S I    F I MA  I  +A +++ ++  
Sbjct: 430 IDAMRELGGAIVSITLVMMAVFIPVSFISGTSGIFYRQFGITMAIAIGFSALNALTLSPA 489

Query: 819 I-LLFIYDWRAKNA 831
           +  +F+        
Sbjct: 490 LCAIFLKPKNEDKQ 503


>gi|157803382|ref|YP_001491931.1| hydrophobe/amphiphile efflux-1 HAE1 family protein [Rickettsia
           canadensis str. McKiel]
 gi|157784645|gb|ABV73146.1| Hydrophobe/amphiphile efflux-1 HAE1 family protein [Rickettsia
           canadensis str. McKiel]
          Length = 1008

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/683 (11%), Positives = 178/683 (26%), Gaps = 55/683 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  +G          +  +   P       I+         +      
Sbjct: 9   KRPVFTTVLSLVIVALGGFFV-----TKLQIRGTPDISVP-IIN--------VNAYYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +  ++   +    ++    +K            ++ ITLSF  S   E   + V   +  
Sbjct: 55  DALYMEKEITTRIEKALKTVKNLDYITSHSSTGKSSITLSFLLSTDIEVALNDVRSKISD 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +      D K   +          ++     DQ     +E +  +       +    S  
Sbjct: 115 ITYMFPHDMKTPSVAKLDTNSFPSLIISIESDQYSD--LELTKIVKDSLQTPLDKLTSVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  E D  +L Q   +  ++       N          R        Q 
Sbjct: 173 QSQIYGGREYIMRIEPDSKKLYQYKISLLEIESAIKEQNKDYPAGTIKTRSNNFIVTLQG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                      +I                 I           
Sbjct: 233 SLSTPEEFG--------------------NIILKVQNRSIIKLRDIAKISLTSPDKDIIF 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +              ++          V          S   
Sbjct: 273 RYNGKSSIALGLIKESKANVIDLSNEVTKELERIKKLMPKGISMGVVYDGATPIKESIYA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+++ +   K  L+   +I +++I T +++   G ++ + ++  ++
Sbjct: 333 VFQTIVEALILVVLVIYLFLASAKMTLILFVTIPVSLIGTFSVMYAFGFSINIFTLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I++ E I   N        +  +        I    IT     + + F  
Sbjct: 393 LAIGIVVDDAIVMLENIFRYNEMGHKPMAAAMLASKEIGFAIIAMTITLAAVFLPVGFIE 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK------SIDINPLSRFF 532
           G   +    FA T+   +L S F A+++   M   ++              +        
Sbjct: 453 GFIGKLFIEFAWTLACCVLFSGFVALTLTPMMSSRMVTKHSKDLPKFLVKFNDILQFIQN 512

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG----------IQLG 582
                + + F   +   + I+  F +  I   FT  +    +  G             L 
Sbjct: 513 KYIYYLNLTFENKKKIVIIIASSFIVLIISFKFTQKVFIPQEDDGFLQLSLKGPEGSSLE 572

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                  +   + +N + +    +       +  F         D       ++ +  K 
Sbjct: 573 SSTKVVTEAEKILANYKDILGYLMIIGAGGSDNVFGFIPLKDWSDRSRSQETIKNILNKQ 632

Query: 643 TEIVPLSTIQNTEIVGPKISREL 665
              +P  +I             +
Sbjct: 633 FSEIPGMSIFAMAPRSMVSGNAI 655



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 90/242 (37%), Gaps = 1/242 (0%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I L V     + L  +     +    DI F+        L  ++    + +  +  + 
Sbjct: 241 GNIILKVQNRSIIKLRDIAKISLTSPDKDIIFRYNGKSSIALGLIKESKANVIDLSNEVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              ++I +++P          G    +E I      ++ + I +++ I          L 
Sbjct: 301 KELERIKKLMPKGISMGVVYDGATPIKESIYAVFQTIVEALILVVLVIYLFLASAKMTLI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T      FG   N+  + A++  IG  V+D +V+ + + +  ++    +
Sbjct: 361 LFVTIPVSLIGTFSVMYAFGFSINIFTLLAMILAIGIVVDDAIVMLENIFRYNEMGHKPM 420

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           +   L  K I   +     T  A F+ V  +  + G +   FA  +A  ++ +   ++ +
Sbjct: 421 AAAMLASKEIGFAIIAMTITLAAVFLPVGFIEGFIGKLFIEFAWTLACCVLFSGFVALTL 480

Query: 816 AA 817
             
Sbjct: 481 TP 482



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 91/271 (33%), Gaps = 11/271 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             ++ L F       I     I +    N  + L  + +  E + +   S  N        
Sbjct: 744  YNVILQFNPKDRKDISAFSKILIRAKNNNMLPLESIANITEKISVKSYSHYNNSKSVTIS 803

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              L      + A   + ++  K +     +           + +       ++  + + +
Sbjct: 804  SDLTPDGKINDAIDEINKIAAKLLDPSNTIIEYIGEIKQMREANS----NMLITFVFALV 859

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  +  +   IT  +    L G   N+ +   ++TLIG    + 
Sbjct: 860  FIYLVLAAQFESFTDPLLILLAVPFSITGGVLTLWLAGNSLNMYSNIGLITLIGLITKNS 919

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ +      +L    +  R  I +S    L   + T++AA +  LP+      G +  
Sbjct: 920  IMIVEFAN---QLREKGVKVRTAIIESSKLRLRPILMTNLAAVVGALPLVFADGTGAAAR 976

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             S    +  G+      +IF+   I      
Sbjct: 977  NSIGFVIVGGLSFGTIFTIFVIPVIYQTFKK 1007


>gi|83815756|ref|YP_445307.1| acriflavine resistance protein (cation efflux system) [Salinibacter
           ruber DSM 13855]
 gi|83757150|gb|ABC45263.1| acriflavine resistance protein (cation efflux system) [Salinibacter
           ruber DSM 13855]
          Length = 1043

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/690 (12%), Positives = 184/690 (26%), Gaps = 60/690 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      + + ++  +G +           +D  P                   + +   
Sbjct: 9   RRPVATTMSFLVVIVVGAVS-----FYYLPVDLLPEIEYP-------------QVSVTTS 50

Query: 62  EDDFVNGFLQMYSDE----LRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             +     ++    +      S +           +  +++ + F         A+ V  
Sbjct: 51  YPNVGPEEMEQIITDPVANAVSSVSNVERITSQSSEGSSRVNMEFGQGTDLNAAANDVRA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  +   L V+ +   +         IV                +  + R    Q    
Sbjct: 111 ALDRIRDDLPVEAEPPSIRKFDPNSQEIVSISVES---RRDLPSLTRLMERNLSKQFEQI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      I  Q+    +  RL     + A++       N +  G            
Sbjct: 168 PGVGTINVQGGIYRQVQVNLNRERLMSYDLSAAQVQQSISSSNVALPGGNVKEGLKDLYV 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q   E   EI    +                                   +      +
Sbjct: 228 RTQGEYESLDEIRNTVVTT--------------------ANGTPVRVQDVAEVIDGYEDL 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L    + +     ++  +              +      + L +V          
Sbjct: 268 GRIAELNGIPVLRLDIQKRSGANTVSVANRVREEVKRVNQTRSDLNLTVVS-DQSDFIRK 326

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  + +    + L ++VL++ +  G    +   SI +++I T ALL     TL   + 
Sbjct: 327 SINNVQSSAIWGSLLAILVLYLFLRNGSTTFIIALSIPISIIATFALLFFNDLTLNQMTF 386

Query: 418 AGIVLGIGLAVDSNILVNER-IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G+ LG+GL VD+ I+V E  IR+     +S+  +  MG       I  S IT  +  + 
Sbjct: 387 GGLALGVGLIVDNAIVVLENIIRQREENGRSLREAASMGTREVAGAILASTITTSVIFLP 446

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           L F         +  A+ +  ++  S+  A+++V  M                       
Sbjct: 447 LVFARTTTASLFQSLALVVVFALACSLLVALTLVPMMASRFLTVDAGEGDAAEDTSKSWF 506

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                S      D I     R          L     +   +             I + +
Sbjct: 507 QRAFASLENQYSDAIRAALQRRWLVFGATGALLVGALLLWPYVSVELAPQTDANQIDVDM 566

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +  +++VV   LE L+         D  +NF  ++Q    +   Q +  E       
Sbjct: 567 QMAQGTNIAVVMKYLEELEQRVQPMLPQDEVENFAKQVQPWGAEVEVQLKSAEERSINTF 626

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +      +    V     R   + G+  +
Sbjct: 627 ALADSIRSEVVGKVPGADLRVSAQSGLWIL 656



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 93/246 (37%), Gaps = 6/246 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V    P   SV  S L + Q G    +        +  +            V+   ++K+
Sbjct: 774  VSIQTPDGNSVPLSTLVTTQRGRGPTEIQRINGQRVTYISANLTSDAVLGEVVNRARQKV 833

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
            + +        T     +  ++     ++ + ++ + + + +  +F ++   L  + ++ 
Sbjct: 834  STLSLPEGFSVTFGGQYREQQKAQTDFLIAIFMALVLIYMVMAGQFERFLDPLIVMFSVP 893

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L +   L      G   N+ +V   + LIG  VN+ +V+ D +  N+      +   + +
Sbjct: 894  LVLVGVLPTLVFTGTTVNIQSVMGFVMLIGIVVNNAIVLVDYI--NLMRRDRDLPLTEAV 951

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + T++   + ++P+A+    G  +  + A  +  G+  +   ++ +   
Sbjct: 952  AEAGRLRLRPILMTTLTTVLGLVPLALGIGAGAEIQAALARVVIGGLTASTLITLLLIPV 1011

Query: 819  ILLFIY 824
              + + 
Sbjct: 1012 AYVSLE 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 80/253 (31%), Gaps = 11/253 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              +      PV +  V   ++  +      +        L   +    ++V+    +  
Sbjct: 241 NTVVTTANGTPVRVQDVAEVIDGYEDLGRIAELNGIPVLRLDIQKRSGANTVSVANRVRE 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             K++ +      +         I + +       +  S +A+L+               
Sbjct: 301 EVKRVNQTRSDLNLTVVSDQSDFIRKSINNVQSSAIWGSLLAILVLYLFLRNGSTTFIIA 360

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTS 754
            ++ + I  T        +  N      +   +G  V++ +VV + +   R+        
Sbjct: 361 LSIPISIIATFALLFFNDLTLNQMTFGGLALGVGLIVDNAIVVLENIIRQREE-----NG 415

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF-AIPMAFGIVVAASSSI 813
            S R+       E  G  + +++   +  LP+     +    F ++ +   +V A + S+
Sbjct: 416 RSLREAASMGTREVAGAILASTITTSVIFLPLVFARTTTASLFQSLALV--VVFALACSL 473

Query: 814 FIAAPILLFIYDW 826
            +A  ++  +   
Sbjct: 474 LVALTLVPMMASR 486


>gi|269965555|ref|ZP_06179670.1| multidrug resistance protein, putative [Vibrio alginolyticus 40B]
 gi|269829834|gb|EEZ84068.1| multidrug resistance protein, putative [Vibrio alginolyticus 40B]
          Length = 1040

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/609 (11%), Positives = 177/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    ++  +               ++ IT++   +         +      
Sbjct: 55  SANLIQGFITQPLEQAVAQADNIDYMTSQSVLGKSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPAKMGALKLTATDVMSVLNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                      +                 +    +  +   
Sbjct: 233 QVSNVAELEA--------------------LVVKTGEGDVIRLGDIAKVTLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLELLPQLERNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +++  +        +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKANEKPSKFEQKVHHILDGMTTR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +               I+F+   +   F        + KG + L   A    +L  
Sbjct: 513 YEGMLKAVMAHRPVVIAFAIIVFASLPVLFKFIPSELAPSEDKGVVMLMGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +++ ++ + 
Sbjct: 573 IQNTMDDVN 581



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +                   E            + +     +  +  ++   +
Sbjct: 251 DVIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELLPQLERNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + +  ++ +A+ +L+ I +    +   +  I T+ L + 
Sbjct: 311 PSNIKMNVMYDSTIAINESIHEVVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +     K ++
Sbjct: 488 MLKANEKPSK 497



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     +  + ++ L I   L 
Sbjct: 830  YNHDYMGESRQFVTEGSALYATFGLALAIIFLVLAIQFESLRDPIVIMVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++       S    D + ++    L
Sbjct: 890  ALAWGTASMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNKRSR--IDAVMEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++ + 
Sbjct: 948  RPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLAEK 1007

Query: 827  RAK 829
               
Sbjct: 1008 HKP 1010


>gi|315105677|gb|EFT77653.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL030PA1]
          Length = 552

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 118/540 (21%), Positives = 207/540 (38%), Gaps = 55/540 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---D 61
            +LVI+  M   +G++                +  P     LGLDLRGG+ + L     D
Sbjct: 2   IFLVIIIVMYVLMGVM---------------RTWSP----KLGLDLRGGTSVTLTAKAED 42

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTL 117
                   L+     +   +   G+G  S++ + ++ I +S  +       E +     L
Sbjct: 43  GKAPSATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQL 102

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME--IIRQRIDQIG 175
             + V ++  V  K            S + +        +     +           Q  
Sbjct: 103 GFRMVYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDASASSKGGTTSSASQYN 162

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +               P  +D                       S            D
Sbjct: 163 EKDPQSAAKMVKAAEEWKPTPEDQKAFEDY------------KCAKSVDSPGDKPLVTCD 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +     +   V I+G  +  A +         VV++ F+ +G   F + T     K   
Sbjct: 211 RERTMKYLLSPVAITGTQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSP 270

Query: 296 VVLDGRVLTAPVINQAIPSGK-----------AQISGNFTIETAGILAAMLRAGSLPIKL 344
                 VL   VI+    +G            AQISG+FT  +A  LA +L+ G+LP+  
Sbjct: 271 QNQFAVVLDGKVISSPQLNGNTGTSCPINGGEAQISGHFTQNSAADLANVLKYGALPLSF 330

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
           +I    N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A 
Sbjct: 331 DISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAA 390

Query: 405 LSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           + LL    G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A 
Sbjct: 391 MVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKAR 450

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            TI  ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 451 GTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFW 510



 Score = 95.1 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 329 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 387

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 388 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIRE---GRTLRTALQT 444

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 445 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 504

Query: 824 YDWR 827
              R
Sbjct: 505 GRTR 508


>gi|222149537|ref|YP_002550494.1| Acr family transporter [Agrobacterium vitis S4]
 gi|221736519|gb|ACM37482.1| Acr family transporter [Agrobacterium vitis S4]
          Length = 1101

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 79/602 (13%), Positives = 176/602 (29%), Gaps = 44/602 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  +G+            + RFP+                  +     
Sbjct: 9   RNPIAPLLGFFLLMVLGI-----QSFNSLPITRFPNIDVAVV---------SISVTQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +         +    +  ++ F      +     V   +  
Sbjct: 55  SPSELEMQVTKEIEDAVASINGVDEISSKVNDGVSVTSVVFRIEIPTQQAVQDVKDAVDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L     + ++     +  +I     +   +     E S  +       +   +   
Sbjct: 115 IRNDLPAGVDEPIVNKVDVEGQAIQTFAVSAPNMTLE--ELSWFVDDTIKRALQGQKGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E DP RL  L  T A ++      N                 G   
Sbjct: 173 RIDRIGGADREIRIELDPDRLNALGITAADVNKQLRGTNVDIGSGR----------GQVA 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E  + + G            +  + +   +      R         I           
Sbjct: 223 GAEQAIRVLGD----------TRNVQALATTTIAISSDRFVKLADLGRIIDSYTEPKSFA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +           S     E        +RA +  + +N++    V    G+ + 
Sbjct: 273 LFDNQPVVSFSVFRSKGASDVAVAELVAKSLDEVRAKNPDVGINLIS-DFVYFTYGNYTA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  L++  ++ L+ I T  +L ++G +L L S   + 
Sbjct: 332 AIDTLLEGAILAVIVVFLFLKNWRATLISAIALPLSAIPTFWILEMMGFSLNLVSFLALT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    +  ++ + +           +  +  T +   V + F G
Sbjct: 392 LATGILVDDAIVEIENIARHIKMGKTPYRAAIEAADEIGLAVIATTFTIVAVFVPVSFMG 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC- 537
           G   +    F +T+  S+L S+  A  I   M  +++R +     D     RF  +    
Sbjct: 452 GIPGQYFIQFGLTVAFSVLFSLLVARLITPMMAAYLMRPEDGHDEDEGQEGRFMRLYTRL 511

Query: 538 ---IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  + R         +   +    L+         +  G I L +       L   
Sbjct: 512 VLTTTSTWYRRYLTLAAALVFLVVSVGLLMQVPTSFLPPEDAGRITLSIELPPNATLDET 571

Query: 595 RS 596
            S
Sbjct: 572 ES 573



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 79/249 (31%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + ++R V L+ +   ++S           +         + +    VA   ++    
Sbjct: 244 TIAISSDRFVKLADLGRIIDSYTEPKSFALFDNQPVVSFSVFRSKGASDVAVAELVAKSL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++    P   I                     +  + +A+++       W   L +   
Sbjct: 304 DEVRAKNPDVGINLISDFVYFTYGNYTAAIDTLLEGAILAVIVVFLFLKNWRATLISAIA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L    T     + G   NL +  A+    G  V+D +V  + +    +      +   
Sbjct: 364 LPLSAIPTFWILEMMGFSLNLVSFLALTLATGILVDDAIVEIENI---ARHIKMGKTPYR 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIA 816
              ++ +E     + T+       +P++  GG        F + +AF ++ +   +  I 
Sbjct: 421 AAIEAADEIGLAVIATTFTIVAVFVPVSFMGGIPGQYFIQFGLTVAFSVLFSLLVARLIT 480

Query: 817 APILLFIYD 825
             +  ++  
Sbjct: 481 PMMAAYLMR 489



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 54/143 (37%), Gaps = 6/143 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + +L L +        +     ++  +  +L L+G    + +++ D   +  
Sbjct: 897  DIIQPFTILLSLPLAVGGVAVALIITHNALSMPVLIGILMLMGIVTKNAILLIDFAIEMR 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +     +   + + ++  +     + TS+A    +LP A+    GGS     AI +  GI
Sbjct: 957  R---HGMERVEAMVEAGRKRARPIIMTSIAMSAGMLPSALGVGEGGSFRSPMAIAVIGGI 1013

Query: 806  VVAASSSIFIAAPILLFIYDWRA 828
            +V+   S+ +     L + D   
Sbjct: 1014 IVSTVMSLVVVPSFFLVMDDLSR 1036


>gi|292487172|ref|YP_003530042.1| cation/multidrug efflux pump [Erwinia amylovora CFBP1430]
 gi|292900448|ref|YP_003539817.1| AcrB/AcrD/AcrF family protein [Erwinia amylovora ATCC 49946]
 gi|291200296|emb|CBJ47424.1| multidrug resistance protein [Erwinia amylovora ATCC 49946]
 gi|291552589|emb|CBA19634.1| Cation/multidrug efflux pump [Erwinia amylovora CFBP1430]
          Length = 1074

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/530 (11%), Positives = 145/530 (27%), Gaps = 38/530 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G+               +P+                   +     
Sbjct: 10  RPVATILLMVAVLASGIFAYGMLSTSALPQVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F+     +    +V   +   
Sbjct: 56  PDVMASSVTAPLERQLGQMPGLSQMTSSSSSGSSVITLQFSLELSLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NS L  D              S V++            +    +  +   ++        
Sbjct: 116 NSLLPTDLPNPPTYKKVNPADSAVIALAASSD-TLPLTKVQDLVNTRVALKLSQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +P+ L     T   ++      N +     F  ++   +      
Sbjct: 175 VTLAGGQQPAIRVRINPNALAAHGLTLEDVNTLVSNSNVNGSKGGFDGQYHSVTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                      ++                 I +          
Sbjct: 235 LRSAAQ--------------------YGNLILTYQNGAALRLHDVAQIDEAAENSYQSAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++        L+A         V          S S  
Sbjct: 275 ANTSPAIVISVQRQPGANVIAVVDAIKARLPTLQAALPDGVKLTVVSDRTQTIRASISDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      L+   ++ L+++ T  ++ L G +L   ++  + +
Sbjct: 335 QFELMLAIALVVMVTFLFLRNVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  +D  I+V E I     + ++   +   G ++   TI     + +   + L F G 
Sbjct: 395 ATGFVIDDAIVVVENISRRLEQGETPMEAALKGSAQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             G   R FAIT+ +SIL+SM  ++++   +  +++     +        
Sbjct: 455 VVGRLFREFAITLAVSILVSMLISLTLTPMLCAYLLHSVPPERQSRFYRR 504



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 64/156 (41%), Gaps = 7/156 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+ ++++R      L     + L +  T G   L G   N   + A+    
Sbjct: 338 LMLAIALVVMVTFLFLR-NVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLTLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ ++D +VV + +    +      +  +   K   +     +  + +    ++P+   G
Sbjct: 397 GFVIDDAIVVVENI---SRRLEQGETPMEAALKGSAQIGFTIISLTFSLIAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              G +   FAI +A  I+V+   S+ +   +  ++
Sbjct: 454 DVVGRLFREFAITLAVSILVSMLISLTLTPMLCAYL 489



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 84/218 (38%), Gaps = 6/218 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + +   D  +  +  + + +  + +   S I           +      +  ++ + +
Sbjct: 848  VTVSFNLNDGYSLEQAQQAIGEVSSALARPSGITLRWQGETAAFQNATGNTLWLILAALL 907

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             M + + I ++ +   +  ++TL       L    L   EF+L A+  V+ LIG    + 
Sbjct: 908  TMYVVLGILYESFIHPVTILSTLPSAAVGALLTLLLCNTEFSLIALIGVILLIGIVKKNA 967

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +        +S RD I ++        + T+MAA +  LP+ +    G  + 
Sbjct: 968  IMMIDFALE--AENKQHLSPRDAIHQACLLRFRPILMTTMAALLGALPLMLASGSGAELR 1025

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                + +  G++ +   ++F    I L+      +  R
Sbjct: 1026 QPLGLVIVGGLIFSQVLTLFSTPVIYLWFDRLAQRFHR 1063


>gi|17227617|ref|NP_484165.1| preprotein translocase subunit SecD [Nostoc sp. PCC 7120]
 gi|17135099|dbj|BAB77645.1| protein-export membrane protein [Nostoc sp. PCC 7120]
          Length = 474

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 122/485 (25%), Positives = 198/485 (40%), Gaps = 62/485 (12%)

Query: 43  RISLGLDLRGGSHLVL----EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97
            I LGLDLRGGS + +      +        L      +   +   G+    ++ +  +K
Sbjct: 26  PIPLGLDLRGGSQITILVKPTAEIKQITERELNGVKSVVEGRVNGLGVSEPVIQTVGTDK 85

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I +        E     +    Q    K     +  LL     +                
Sbjct: 86  ILVQLPGVNDPEQAERVLGGTAQLEFRKQKQGTETQLLAFQASRLELQAKQAELKKSNDK 145

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            A+ +++E +++    I     +       +                       +     
Sbjct: 146 AAVNKNLEDLQKNNQAIAELFESTNPPLDGK----------------------HLEDAYG 183

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
            P      +   +RF +        +   +  +G  +                       
Sbjct: 184 EPTQGSSNWNVAIRFDQKGGELFAELTKNLAGTGRSIGIFL------------------- 224

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
                              ++    +     +  I  G A I+G FT + A  L   LR 
Sbjct: 225 ----------------DNELISAPNVGIEFASTGITGGSAVITGRFTAQQANDLGVQLRG 268

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           G+LP+ + I E R VGA LG DSI     A + GL L+++FM+V Y   GL+AD S+ + 
Sbjct: 269 GALPVPVEIAEIRTVGATLGKDSINSSIYAGLGGLTLVLIFMVVYYRLPGLIADISLIIY 328

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
            ILT A  +LLG TLTLP IAG +L IG+AVD+N+L+ ER REE +  +S++ S++ GF 
Sbjct: 329 AILTWASFALLGITLTLPGIAGFILSIGMAVDANVLIFERTREELQAGKSLYRSVESGFY 388

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           RA+S+I D N+T +IA   LF+ G G V+GFA+T+ L + +SMF+A++  R +M   I  
Sbjct: 389 RAFSSILDGNVTTVIACAALFWLGAGLVKGFALTLALGVAVSMFSAVTCSRTLMFLAISI 448

Query: 518 KKMKS 522
             ++ 
Sbjct: 449 PSLRK 453



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ I   I   +     +LI++ + ++    L A  +LI+    T   FAL GI 
Sbjct: 284 GATLGKDSINSSIYAGLGGLTLVLIFMVVYYRLP-GLIADISLIIYAILTWASFALLGIT 342

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      S    ++          +  ++
Sbjct: 343 LTLPGIAGFILSIGMAVDANVLIFERTREELQA---GKSLYRSVESGFYRAFSSILDGNV 399

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +   G  ++  FA+ +A G+ V+  S++  +  ++  
Sbjct: 400 TTVIACAALFWLGAGLVKGFALTLALGVAVSMFSAVTCSRTLMFL 444


>gi|154173881|ref|YP_001407482.1| acriflavine resistance protein B [Campylobacter curvus 525.92]
 gi|112802145|gb|EAT99489.1| acriflavine resistance protein B [Campylobacter curvus 525.92]
          Length = 1051

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/542 (11%), Positives = 160/542 (29%), Gaps = 27/542 (4%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL-KKEGIGV 88
             ++ +P   P                       + +   +    ++  + +     +  
Sbjct: 31  LPIEEYPKLTPPEV---------SVSASYTGANAEIIASTVASILEDEINGVENMIYMQS 81

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            S       I++ F      +     V   +Q   ++L  + ++  +         + + 
Sbjct: 82  TSSSSGTMSISVYFNIGSNSKQATIDVNNRVQAALARLPQEVQQVGVTVRERSSSILEVV 141

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
               D    +  + +  ++    D+I   +              +     P  L +   +
Sbjct: 142 AFTTDDPSMNKRDLANYVLLNISDEIKRVKGVGDVAVIGNQSYAMRIWLKPDELSKFNIS 201

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
            +++       N+       G   L+D+                  +  +     K  + 
Sbjct: 202 VSEVLSAIKTQNSQYAAGTIGEPPLQDAKNPYVY------------SIKSDGRYSKPEEF 249

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
              +                +I   +        L    +   +   +   +   T ++ 
Sbjct: 250 ENIVLRANSDGTMLKLKQVADIDIGMQSYSFNGFLNNQTMVPMLVFLQNDANALQTAQSV 309

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                 L A       + V          S      T      LV+IV++  +   +  +
Sbjct: 310 AQRLNELSASYPEGFKHTVSYDTTTFVQVSIEEVVKTFVEAMLLVMIVMYFFLKSIRATI 369

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS- 447
           +   ++ +++I T A    +G ++ L ++  ++L IG+ VD  I+V E +     +    
Sbjct: 370 IPMLAVPVSIIGTFAGFYAMGFSINLITLFALILAIGIVVDDAIIVIENVERIMHEEPDI 429

Query: 448 --VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG--GGAVRGFAITMGLSILISMFTA 503
                ++      A   I    + + +   V F  G  G   R FA+T+ +S+ +S F A
Sbjct: 430 SVKDAAIKAMEEVATPVISIVLVLSAVFVPVAFMEGFVGVIQRQFALTLVVSVCLSGFVA 489

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +++  A+   +++  + K   I      F            A+     I  L  +  +  
Sbjct: 490 LTLTPALAAIMLKRGENKPFWIVQKFNDFFDWSTKMFSAGVAKVLRHVIPSLIIVAVVIF 549

Query: 564 LF 565
             
Sbjct: 550 AM 551



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 76/218 (34%), Gaps = 7/218 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++       +++   + +     +++   P               +  I + +   + + 
Sbjct: 292 MLVFLQNDANALQTAQSVAQRLNELSASYPEGFKHTVSYDTTTFVQVSIEEVVKTFVEAM 351

Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           + ++I ++         +  +  + + I  T   F   G   NL  + A++  IG  V+D
Sbjct: 352 LLVMIVMYFFLKSIRATIIPMLAVPVSIIGTFAGFYAMGFSINLITLFALILAIGIVVDD 411

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI-- 794
            ++V + + + +      IS +D   K++ E     V + +    +V     +    +  
Sbjct: 412 AIIVIENV-ERIMHEEPDISVKDAAIKAMEEVATP-VISIVLVLSAVFVPVAFMEGFVGV 469

Query: 795 --GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               FA+ +   + ++   ++ +   +   +       
Sbjct: 470 IQRQFALTLVVSVCLSGFVALTLTPALAAIMLKRGENK 507



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 96/287 (33%), Gaps = 11/287 (3%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
            ++    S+L     + +          +    I +       V L+ V +   S+    +
Sbjct: 755  YYVNDFSMLGKTYRVYVRAKDTFRNSPEDLRSIFIKSSNGDMVSLNSVATLTRSMGPDIV 814

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
               N       L           A   + E+VK+ +++         T       S    
Sbjct: 815  DRFNLFPAAKVLGDPAAGYTSGDALNAIQEVVKETLSDAEYSVAWSGTAYQEVNASG--- 871

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              G    I   + + + +  ++ +W   L  IT +   +  +L      G+  ++     
Sbjct: 872  -TGTTAFIFGMVFVFLILAAQYERWLIPLAVITAVPFAVFGSLLATWARGLTNDVYFQVG 930

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +L LIG S  + +++ +     M+   +  S  D    +        V TS+A  + V P
Sbjct: 931  LLLLIGLSAKNAILIVEFA---MQERESGKSVFDAAISAAKLRFRPIVMTSIAFTLGVFP 987

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            M +    G +   S    +  G++ A++ SIF        + +   K
Sbjct: 988  MVISTGAGAASRHSLGTGVVGGMIAASTISIFFVPLFYYLLENLNEK 1034


>gi|15640194|ref|NP_229821.1| multidrug resistance protein, putative [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121591314|ref|ZP_01678605.1| multidrug resistance protein, putative [Vibrio cholerae 2740-80]
 gi|121729917|ref|ZP_01682341.1| multidrug resistance protein, putative [Vibrio cholerae V52]
 gi|147674069|ref|YP_001218436.1| putative multidrug resistance protein [Vibrio cholerae O395]
 gi|153217342|ref|ZP_01951093.1| multidrug resistance protein, putative [Vibrio cholerae 1587]
 gi|153823829|ref|ZP_01976496.1| multidrug resistance protein, putative [Vibrio cholerae B33]
 gi|153831081|ref|ZP_01983748.1| putative multidrug resistance protein [Vibrio cholerae 623-39]
 gi|227080397|ref|YP_002808948.1| putative multidrug resistance protein [Vibrio cholerae M66-2]
 gi|229507021|ref|ZP_04396529.1| RND multidrug efflux transporter [Vibrio cholerae BX 330286]
 gi|229509398|ref|ZP_04398881.1| RND multidrug efflux transporter [Vibrio cholerae B33]
 gi|229512508|ref|ZP_04401980.1| RND multidrug efflux transporter [Vibrio cholerae TMA 21]
 gi|229516345|ref|ZP_04405793.1| RND multidrug efflux transporter [Vibrio cholerae RC9]
 gi|229521122|ref|ZP_04410543.1| RND multidrug efflux transporter [Vibrio cholerae TM 11079-80]
 gi|229527319|ref|ZP_04416712.1| RND multidrug efflux transporter [Vibrio cholerae 12129(1)]
 gi|229606536|ref|YP_002877184.1| RND multidrug efflux transporter [Vibrio cholerae MJ-1236]
 gi|254292192|ref|ZP_04962961.1| multidrug resistance protein, putative [Vibrio cholerae AM-19226]
 gi|254851292|ref|ZP_05240642.1| multidrug resistance protein [Vibrio cholerae MO10]
 gi|255743983|ref|ZP_05417937.1| RND multidrug efflux transporter [Vibrio cholera CIRS 101]
 gi|262147167|ref|ZP_06027974.1| RND multidrug efflux transporter [Vibrio cholerae INDRE 91/1]
 gi|297581599|ref|ZP_06943521.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|9654566|gb|AAF93340.1| multidrug resistance protein, putative [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121546831|gb|EAX56994.1| multidrug resistance protein, putative [Vibrio cholerae 2740-80]
 gi|121628342|gb|EAX60847.1| multidrug resistance protein, putative [Vibrio cholerae V52]
 gi|124113643|gb|EAY32463.1| multidrug resistance protein, putative [Vibrio cholerae 1587]
 gi|126518653|gb|EAZ75876.1| multidrug resistance protein, putative [Vibrio cholerae B33]
 gi|146315952|gb|ABQ20491.1| putative multidrug resistance protein [Vibrio cholerae O395]
 gi|148873437|gb|EDL71572.1| putative multidrug resistance protein [Vibrio cholerae 623-39]
 gi|150421894|gb|EDN13872.1| multidrug resistance protein, putative [Vibrio cholerae AM-19226]
 gi|227008285|gb|ACP04497.1| putative multidrug resistance protein [Vibrio cholerae M66-2]
 gi|227012022|gb|ACP08232.1| putative multidrug resistance protein [Vibrio cholerae O395]
 gi|229335327|gb|EEO00811.1| RND multidrug efflux transporter [Vibrio cholerae 12129(1)]
 gi|229342007|gb|EEO07008.1| RND multidrug efflux transporter [Vibrio cholerae TM 11079-80]
 gi|229346771|gb|EEO11741.1| RND multidrug efflux transporter [Vibrio cholerae RC9]
 gi|229350507|gb|EEO15455.1| RND multidrug efflux transporter [Vibrio cholerae TMA 21]
 gi|229353713|gb|EEO18650.1| RND multidrug efflux transporter [Vibrio cholerae B33]
 gi|229356126|gb|EEO21045.1| RND multidrug efflux transporter [Vibrio cholerae BX 330286]
 gi|229369191|gb|ACQ59614.1| RND multidrug efflux transporter [Vibrio cholerae MJ-1236]
 gi|254846997|gb|EET25411.1| multidrug resistance protein [Vibrio cholerae MO10]
 gi|255738248|gb|EET93639.1| RND multidrug efflux transporter [Vibrio cholera CIRS 101]
 gi|262031391|gb|EEY49998.1| RND multidrug efflux transporter [Vibrio cholerae INDRE 91/1]
 gi|297534006|gb|EFH72845.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 1036

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/597 (12%), Positives = 174/597 (29%), Gaps = 42/597 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAIF-----KMQVREYPEMTNTVIT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      +++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNELASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  + A +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++                      +                 +    +      
Sbjct: 233 QVSTVEDLE--------------------SLVVKAEKGTVTRLGDIAKVTLAKSHDTYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 273 SANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLIP 535
              G   + FA+T+  S+ +S   A+++   M   +           + ++ L       
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTAR 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               +  + A    V         S+ +LF    +     +    + ++   P + +
Sbjct: 513 YERMLTAVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNAN 569



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 83/244 (34%), Gaps = 7/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +     +             E            + +   + +  +  ++ + +P +   
Sbjct: 257 DIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEM 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N          E I + I  ++ +A+ +L+ I +        L  I T+ L +       
Sbjct: 317 NVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G  +NL  + A++  IG  V+D +VV + +    +      S          E    
Sbjct: 377 QMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGTREIAIP 433

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   +     
Sbjct: 434 VIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANE 493

Query: 829 KNAR 832
              +
Sbjct: 494 APNK 497



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 79/791 (9%), Positives = 210/791 (26%), Gaps = 36/791 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                     ++L S +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 229  SADTQVSTVEDLESLV--VKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 286

Query: 126  LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                   N+     E    +   + S   ++ +    +  +    E+I+  ++   I   
Sbjct: 287  APSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLV 346

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 347  VITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 404

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 D+    G     A      +   PV+ ++           +     G        
Sbjct: 405  VLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL 464

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                +  V      +    +               L+   L  ++    ER + A +   
Sbjct: 465  TLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHR 524

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
             +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 525  PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKIL 584

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                 +            N+     +    S   +     +    T+        +    
Sbjct: 585  SDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTA-- 642

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             F        G  + +   I            A  +          +  +    F     
Sbjct: 643  -FQMPELPGAGSGLPIQFVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATM 701

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
             I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 702  KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 761

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
            S       G +         + +   +  P  +   +  +  V    T +          
Sbjct: 762  SYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENL 821

Query: 652  --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 822  ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   A      N+ +   ++TL+G      +++ +  ++        +S  + +
Sbjct: 882  LAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIEAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
              +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 940  MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 999

Query: 819  ILLFIYDWRAK 829
            I  ++ +    
Sbjct: 1000 IYSYLAEKHKP 1010


>gi|294139942|ref|YP_003555920.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
 gi|293326411|dbj|BAJ01142.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
          Length = 1033

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 56/529 (10%), Positives = 149/529 (28%), Gaps = 38/529 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  ++C  G +        +  +   P                      +  
Sbjct: 9   KRPVVAIVLSLLLCVFGAVS-----FSKLAIREMPDVESPVVT---------VMTTYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R   ++IT+SF            V   +  
Sbjct: 55  SATIMESQITTALEDELTGISGIDEITSVTRNGMSRITISFDLDWDLTEGVSDVRDAVAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +    ++          +    +    +    + +    R   D+  +     
Sbjct: 115 AQRRLPDEANDPIVSKDNGSGEPSIYINLSSS--VMDRTQLTDYAKRVLEDRFSLITGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +   +  +  P  +     TTA +       N    G                
Sbjct: 173 SVSISGGLYKVMYVQLKPELMAGRNVTTADIIASLKAENIETPGGE-------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V      +   TA            +          +     ++           
Sbjct: 219 -----VRNDTTVMTVRTARLYNNPEDFDYLVVRTASDGTPIYLKDVASVFVGAENENSTF 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     + A I    ++         +V+  +      S S 
Sbjct: 274 KSDGVPNLSLGIIAQSDANPLKVAKAAHIEVERIQQFLPEGTQLVVDYDSTVFIDRSISE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +  GLV++VL++ +   +  L+   ++ +++I      ++ G ++ L ++  ++
Sbjct: 334 VYSTLLLTGGLVVLVLYIFIGQARATLIPAVTVPVSLISAFIAANIFGFSINLLTLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     K +    +   G       +  +    ++  + + F  
Sbjct: 394 LSIGLVVDDAIVVVENIFHHIEKGEPPLLAAYNGTREVGFAVVATTAVLVMVFLPICFME 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           G        F++ + +S++ S   A+++   +   +++     +     
Sbjct: 454 GMVGRLFTEFSVMLAMSVIFSSIVALTLTPVLASKMLKANVKPNRFNVW 502



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 6/145 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    T+ + +        +FG   NL  + A++  IG  V+D +VV + +      
Sbjct: 357 RATLIPAVTVPVSLISAFIAANIFGFSINLLTLMALILSIGLVVDDAIVVVENI---FHH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
                           E     V T+    +  LP+    G V      F++ +A  ++ 
Sbjct: 414 IEKGEPPLLAAYNGTREVGFAVVATTAVLVMVFLPICFMEGMVGRLFTEFSVMLAMSVIF 473

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           ++  ++ +   +   +     K  R
Sbjct: 474 SSIVALTLTPVLASKMLKANVKPNR 498



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 48/141 (34%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   +  + T+ + +        L G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPMVVMFTVPMGVFGGFLGLYLTGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    +     I  +    L   + T+    +  +P+ +    G     +    + FG+
Sbjct: 931  QLRDKGLEIEQAIIDASARRLRPILMTAFTTLVGAVPLIMSTGAGSESRIAVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDW 826
              A   ++ +   +   I   
Sbjct: 991  AFATFVTLLVIPAMYRLISAK 1011


>gi|108756809|ref|YP_628935.1| AcrB/AcrD/AcrF family efflux transporter inner membrane protein
           [Myxococcus xanthus DK 1622]
 gi|108460689|gb|ABF85874.1| efflux transporter, AcrB/AcrD/AcrF family, inner membrane component
           [Myxococcus xanthus DK 1622]
          Length = 1038

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/526 (9%), Positives = 150/526 (28%), Gaps = 39/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L   +            L +   D +P       +          + V +  
Sbjct: 9   RRPVFTAMLSLCLVV-----LGLMGLGRLGTDLYPDVSFPVVV---------INTVYKGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +          R+    + + F  +   +     V   + G
Sbjct: 55  GPGEIETQVIKPLEDAVAGISGVDKIHSYSRENVGIVVVQFKMTAPLDRAVQDVRDKVAG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L  D    ++         I+    + +            I  +    +   E   
Sbjct: 115 IVSRLPQDADAPVIGRVDLGATPILTYAVSAELPSQELRRL---IDDRVKPALAQLEGAA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++  + D  + R    +   ++                         N  
Sbjct: 172 EVRVTGGDTREVQIDIDLDKARAAGVSPLGIAQRVASE-------------------NLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   ++++    +   +        +             +       ++   +A      
Sbjct: 213 LPAGRLQLGASEMTVRSLGQFQNVDEIRDLPVARSATGAQVRLGEIASVTDGVAERRTLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +     E    + A + +         +          +   
Sbjct: 273 RLNGQDAVILEIVKQPGSNTVAVSEAVRQVMAQMGSVVGHGFQATLLINQSDIIQENAHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     + ++++ + +L  +   ++  ++  +V+ T  ++ +L  TL   ++  + 
Sbjct: 333 VWVALIFGGAMAVLIILIFLLDVRGTFISALALPTSVLGTFFVMYVLDYTLNQMTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL +D  ++V E I     K +    +   G       +  + +  +   V + F  
Sbjct: 393 LAIGLLIDDAVVVREAITHRLEKGEDPVSAASNGTKDVGLAVLATTLALVAVFVPVAFMP 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              G   R F IT+ +++LIS+F + ++   M   + + +    + 
Sbjct: 453 GIVGQFFRQFGITISVAVLISLFISFTLDPMMSARLAKRRVPGEVR 498



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 80/244 (32%), Gaps = 7/244 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  + S  + +       +    +   L  ++    ++VA +  +  V  ++  +V 
Sbjct: 252 QVRLGEIASVTDGVAERRTLARLNGQDAVILEIVKQPGSNTVAVSEAVRQVMAQMGSVVG 311

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTLILDITK 706
                   I    I +E   +  V +I   A+A+LI +           +   L   +  
Sbjct: 312 HGFQATLLINQSDIIQENAHEVWVALIFGGAMAVLIILIFLLDVRGTFISALALPTSVLG 371

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T     +     N   + A+   IG  ++D VVV + +                      
Sbjct: 372 TFFVMYVLDYTLNQMTLLALSLAIGLLIDDAVVVREAI---THRLEKGEDPVSAASNGTK 428

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +     + T++A     +P+A      G     F I ++  ++++   S  +   +   +
Sbjct: 429 DVGLAVLATTLALVAVFVPVAFMPGIVGQFFRQFGITISVAVLISLFISFTLDPMMSARL 488

Query: 824 YDWR 827
              R
Sbjct: 489 AKRR 492



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 65/164 (39%), Gaps = 9/164 (5%)

Query: 674  IISAIAMLIYIWIRFKW---YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
                  + IY+ +  ++      L  + +L L +   L    + G   ++ A+  ++ L+
Sbjct: 857  AFGLAFVFIYMVLASQFESYKHPLTIMVSLPLALVGALLGLVVTGFHLSMGAMIGIILLM 916

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ D   +N++      +  + + K+    L   + TS A  I+++P AV  
Sbjct: 917  GLVTKNAILLIDGALQNLRE---GDTVDEALLKAGPRRLRPILMTSAAMAIAMVPTAVGS 973

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G       AI +  G++ +   ++ +   +   +     K  
Sbjct: 974  GTGSEFRAPMAISVIGGVITSTFLTLLVVPVVFAGMERLGFKRR 1017


>gi|218131780|ref|ZP_03460584.1| hypothetical protein BACEGG_03401 [Bacteroides eggerthii DSM 20697]
 gi|217986083|gb|EEC52422.1| hypothetical protein BACEGG_03401 [Bacteroides eggerthii DSM 20697]
          Length = 1138

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/521 (12%), Positives = 147/521 (28%), Gaps = 44/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +GL+      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGLI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +         +I++ F      +  A  V  
Sbjct: 51  QGANAQTVLNSVIAPLEDQINGVENMMYMTSNAANNGSAEISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  + T   +   +++     ++                I +I   
Sbjct: 111 RVSMAQGLLPAEVTQVGVTTQKRQTSMLMVFSIYDEKDQYDIEFLENYANINLIPEIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q     + ++      N       FG    R + 
Sbjct: 171 NGVGDATVLG-QDYSMRIWLKPDVMAQYKLIPSDVAGALAEQNIEAAPGQFGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                +I       
Sbjct: 227 SFQYTIRYKGRL-------------QQPEEFENIVIKALENGEVLRMKDIADIELGRLSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     + +             + +        
Sbjct: 274 NFNNTVNGHKAVSCIVYQMAGTNATQTISDLEQVLSKASETLPSGLKINIAQSANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVVKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   V 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARTASIDAMSELGGAIVSITLVMMSVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F G   G   R F +TM ++I  S   A+++  A+    
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGFSALNALTLSPALCAIF 494



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/310 (10%), Positives = 84/310 (27%), Gaps = 28/310 (9%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                       +         ++     N   + +    + V     +       +++ +
Sbjct: 816  MQGYFGGLYASNFNSFGKMYRVMIQAEPNATKNLESLSSIKVRNGNEMAPITQFVSIKKV 875

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               DI  +        ++        S      +  V K+             E+ G   
Sbjct: 876  YGPDIISRFNLYTSMKVMVAPASGYTSGQALAAIAEVAKESLPTG-----FAYELGGMAR 930

Query: 662  SRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALF 714
                      G+I     + +Y+ +      +   L  + +    L+       G  +L 
Sbjct: 931  EEAETSGSTTGLIFVLCFVFVYLLLSAQYESYILPLSVLLSVPFGLLGSFLFVSGIGSLG 990

Query: 715  GIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             I      +           A++ L+G    + +++ +     +      +S        
Sbjct: 991  NIPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFA---LDRRKMGMSITWAAVLG 1047

Query: 765  INETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + TS+A  + +LP+      G +   +       G+++     IFI   + +
Sbjct: 1048 AGARLRPILMTSLAMIVGLLPLMFASGAGANGNRTLGTSAIGGMLIGMILQIFIVPALFV 1107

Query: 822  FIYDWRAKNA 831
                 + K  
Sbjct: 1108 AFQYLQEKVK 1117



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 6/211 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      LE V  K +E +P     N            I + +  +I + I
Sbjct: 288 IVYQMAGTNATQTISDLEQVLSKASETLPSGLKINIAQSANDFLFASIHEVVKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R     +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SARTASIDAMSELGGAIVSITLVMMSVFVPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F + MA  I  +A +++ ++  +      
Sbjct: 466 RQFGLTMAIAIGFSALNALTLSPALCAIFLK 496


>gi|72382122|ref|YP_291477.1| preprotein translocase subunit SecD [Prochlorococcus marinus str.
           NATL2A]
 gi|72001972|gb|AAZ57774.1| SecD/SecF/SecDF export membrane protein:SecD export membrane
           protein [Prochlorococcus marinus str. NATL2A]
          Length = 496

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 125/537 (23%), Positives = 221/537 (41%), Gaps = 69/537 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R N W    +  +    +                          LGLDLRGGS L LEV 
Sbjct: 3   RKNYW----FLFVILFAIFSIF--------------ICTNIPFQLGLDLRGGSQLTLEVQ 44

Query: 62  E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116
                       ++     L   +   G+    ++ +  N++ L     +     A  + 
Sbjct: 45  PTKEITKITPNEIEGVKAVLDKRVNGLGVSDSQLQTVGTNQLLLELPGEQDPSGAAKVLG 104

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                            L    T++     +    +++  + A       I   I+Q+  
Sbjct: 105 ETALLEFRIQKNGTAAQLRDLQTQRNSVESIISL-LEENNNSAQLLKEININNDINQLFE 163

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
             +         +       +  + +  L   T+                          
Sbjct: 164 KYNIQSDQILDEVQFNTLRNKISTEIASLFEPTS-------------------------- 197

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                       ++G +L  A    D  T+   V +SF+  G   F ++T+   G    +
Sbjct: 198 ------------LTGQYLTNAGRRQDQNTNNWEVTLSFNNEGGELFADLTKSIAGTSRLL 245

Query: 297 VLDGRVLTAPVIN-------QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
            +    ++    +         I  G A ISGNFT + A  L   LR G+LP+ + IV+ 
Sbjct: 246 GIVIDGISYSEASVGKQFETAGITGGAATISGNFTADDARNLEVQLRGGALPLPIEIVQI 305

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG+ +I     A + GL  + +FMI +Y   G VA  ++    + TL++ +LL 
Sbjct: 306 RTIGPSLGTQNIRLSLFAALTGLFFVGIFMIFIYKLAGFVAVLALSCYSLFTLSIYALLP 365

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            TLTLP IAG +L IG+AVD+N+L+ ER++EE     ++  S+D  F  A+S+I D ++T
Sbjct: 366 VTLTLPGIAGFILSIGMAVDANVLIFERLKEELLNGNTLIRSIDASFKNAFSSIIDGHLT 425

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            LI+ + LF+ G G V+GFA T+G+ +++S+FTA++  +A++ F++ ++ ++ I   
Sbjct: 426 TLISCITLFYLGTGFVKGFAATLGIGVMLSLFTALTCTKAILKFLMSFQGLRKISNF 482



 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/335 (12%), Positives = 107/335 (31%), Gaps = 17/335 (5%)

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           ++  I     +  +      +   I D +    +R +      S+           T+  
Sbjct: 148 LLKEININNDINQLFEKYNIQSDQILDEVQFNTLRNKISTEIASLFEPTSLTGQYLTNAG 207

Query: 570 NYGIDFKGGIQLGVLANRPV-------------DLSVVRSNLESLQIGDISFQNFDGEKN 616
                     ++ +  N                   ++   ++ +   + S         
Sbjct: 208 RRQDQNTNNWEVTLSFNNEGGELFADLTKSIAGTSRLLGIVIDGISYSEASVGKQFETAG 267

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                    G+  A       V+ +   +     I     +GP +  + IR  +   +  
Sbjct: 268 ITGGAATISGNFTADDARNLEVQLRGGALPLPIEIVQIRTIGPSLGTQNIRLSLFAALTG 327

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
              + I++   +K      A+  L      TL  +AL  +   L  +A  +  IG +V+ 
Sbjct: 328 LFFVGIFMIFIYKL-AGFVAVLALSCYSLFTLSIYALLPVTLTLPGIAGFILSIGMAVDA 386

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
            V++++R+++ +       +    ID S        +   +   IS + +   G   +  
Sbjct: 387 NVLIFERLKEELL---NGNTLIRSIDASFKNAFSSIIDGHLTTLISCITLFYLGTGFVKG 443

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           FA  +  G++++  +++     IL F+  ++    
Sbjct: 444 FAATLGIGVMLSLFTALTCTKAILKFLMSFQGLRK 478


>gi|115524631|ref|YP_781542.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
 gi|115518578|gb|ABJ06562.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
          Length = 1042

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 75/585 (12%), Positives = 164/585 (28%), Gaps = 40/585 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ + I   G+            +   P       I++   L G S   +   
Sbjct: 9   RRPVMTTLITASIIAFGIF-----GFRLLPVSALPKVDFPT-IAVTATLPGASADTMAAS 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   L        S +        S  Q  + IT+ F  +R  +  A  V   L  
Sbjct: 63  VAGVIERQL--------STIAGVSSMTSSSSQGTSVITIQFDLNRDIDAAALDVQTALTI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKE-ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L V+                ++        +   A+  +          +      
Sbjct: 115 AQRRLPVEMTTPPSFRKVNPAEFPVLFVALGSATLPLSAV--NEYGSITIGQALSQVTGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  + DP        +   +       N+S             +    
Sbjct: 173 AQVSIYGEQKFAVRVQADPEIAAARGLSLEDIRVAVAAANSSTPVGTLNGPKQDVALQAS 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   +                       I                 I   +      
Sbjct: 233 GQMDKAAD--------------------YRQIVVAWRNGSPVKLDEVARIYDSVENDKIA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    ++        LRA   P     V      +   + +
Sbjct: 273 TWFNGERSIVLAIQKQPDANTVAVVDGVRAKLPSLRAQIPPSVNMSVMMDRSISVRQAVA 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  I   LV++V+F+ +       +   ++ +++I T A++ +LG ++   ++  +
Sbjct: 333 DVEETLLIAVVLVILVIFLFLRSASATFIPALAVPISLIGTCAVMYVLGFSINNMTLLAM 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I++ E I     +    F +   G      TI     + +   + +   
Sbjct: 393 TLSVGFVVDDAIVMLENIVRHIERGMRPFEAALKGAREISFTIISITFSLIAVFIPVLLM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FA+T+ ++IL+S F ++++   +   ++R       ++  L  F  +   
Sbjct: 453 GGIVGRVFREFAVTISVAILVSGFVSLTLTPMLCARLLRAHDPAKKEMWILRLFERVFAA 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
               +  A    +    +  + ++  L      Y I  KG     
Sbjct: 513 WLRGYEWALDKVLAHKSMMLLVTLATLGGTVYLYSIVPKGFFPQE 557



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 91/253 (35%), Gaps = 7/253 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               PV L  V    +S++   I+          L   +    ++VA    +      + 
Sbjct: 249 RNGSPVKLDEVARIYDSVENDKIATWFNGERSIVLAIQKQPDANTVAVVDGVRAKLPSLR 308

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAITTLIL 702
             +P S   +  +      R+ +      ++I+ + +++ I++  +   A       + +
Sbjct: 309 AQIPPSVNMSVMMDRSISVRQAVADVEETLLIAVVLVILVIFLFLRSASATFIPALAVPI 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     + G   N   + A+   +G+ V+D +V+ + +   ++     +   +   
Sbjct: 369 SLIGTCAVMYVLGFSINNMTLLAMTLSVGFVVDDAIVMLENI---VRHIERGMRPFEAAL 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K   E     +  + +     +P+ + G   G V   FA+ ++  I+V+   S+ +   +
Sbjct: 426 KGAREISFTIISITFSLIAVFIPVLLMGGIVGRVFREFAVTISVAILVSGFVSLTLTPML 485

Query: 820 LLFIYDWRAKNAR 832
              +        +
Sbjct: 486 CARLLRAHDPAKK 498



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 83/225 (36%), Gaps = 6/225 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            +        N  G++  +        +      V E+ K + +  +P++           
Sbjct: 790  VPTVGPLQINHQGQQPAVTISFNLAPNQSLGYAVDEITKLERSSNLPVTIATGFSGTAQV 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
                L  +G++ +     A +I   +   +   +  I+ L       +    LF +E ++
Sbjct: 850  FQDSLRGQGVLILAAVFAAYVILGILYESFIHPITIISGLPSAGIGAILTLMLFNMELSV 909

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             A+  ++ L+G    + +++ D   +  +     I+    I ++        + T+ AA 
Sbjct: 910  IAMIGIVMLVGIVKKNAIMMVDFALERRRF---GINAEQAIREAALLRFRPIMMTTFAAI 966

Query: 781  ISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               LP+A+    G  +     I +  G+ V+   ++FI   I ++
Sbjct: 967  FGTLPIALGAGAGAELRQPLGIAVVGGLCVSQLLTLFITPVIYIY 1011


>gi|329895350|ref|ZP_08270975.1| acriflavin resistance protein [gamma proteobacterium IMCC3088]
 gi|328922363|gb|EGG29707.1| acriflavin resistance protein [gamma proteobacterium IMCC3088]
          Length = 728

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/520 (12%), Positives = 162/520 (31%), Gaps = 48/520 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V++ +++   GL         +  L +FP                   ++++  
Sbjct: 9   RRPVLAVVISALLLVAGL-----QSFNRLELRQFPEVEKSL-------------IIVQTA 50

Query: 62  EDDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +Q Y  +         +       S     + I +    +     + ++V  
Sbjct: 51  YPGASADTVQAYVTDALQRRIAGARGIDYLTASSAPGMSTIQVHVRLNEDTSMVQNEVIA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  + +  ++ T+   + +++      +Q+  +  + +  + R    ++   
Sbjct: 111 KISEAKYELPREIEDPVVTTSQGDD-AMMYIAFTSEQL--NTKQITDYLHRAIQPELATI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q       +  +     P +L     T A+++      N           + R + 
Sbjct: 168 EGVGQAQVLSGTVFAMRIWLQPEKLAAYNITAAEVNRALQRNNVRAAPGGVESAWTRTAV 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  +ED  E+ G  +                     + G +R        +       
Sbjct: 228 DVETDIEDP-ELFGEIIVR-------------------QNGDQRVRLKDLARVELGSERY 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +     +     +      A L A      +   +         
Sbjct: 268 NVTVYSEGNTGVFLSITSAPGANPLAVAQRVKQKLADLAAEMPADLVADADSDASIYIEK 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      +V+ V+ + +   +  ++   +I L+++  L  L ++  ++ L ++
Sbjct: 328 AIEEVGMTLIEATFIVIGVILLFLGSWRVVIIPLVAIPLSLVGVLFGLWVVDFSVNLLTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +V+ IGL VD  I+V E I     + ++ + +  +G       +    +T       +
Sbjct: 388 LAMVIAIGLVVDDAIVVVENIHRHIEEGKTPYEAALIGAREVALPVVAMTLTLAAVYAPI 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            F G   G     FA+T+  ++++S   A+++   M   I
Sbjct: 448 AFVGGLTGTLFSEFALTLAGAVVVSGLIALTLSPMMCSKI 487



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 76/229 (33%), Gaps = 6/229 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + R  L S +     +   +      +             RV + +     E+      
Sbjct: 256 DLARVELGSERYNVTVYSEGNTGVFLSITSAPGANPLAVAQRVKQKLADLAAEMPADLVA 315

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    I + +   G+  +  + I + + +     W   +  +  + L +   L   
Sbjct: 316 DADSDASIYIEKAIEEVGMTLIEATFIVIGVILLFLGSWRVVIIPLVAIPLSLVGVLFGL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +     NL  + A++  IG  V+D +VV + +    +      +  +       E    
Sbjct: 376 WVVDFSVNLLTLLAMVIAIGLVVDDAIVVVENIH---RHIEEGKTPYEAALIGAREVALP 432

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            V  ++       P+A  G   G++   FA+ +A  +VV+   ++ ++ 
Sbjct: 433 VVAMTLTLAAVYAPIAFVGGLTGTLFSEFALTLAGAVVVSGLIALTLSP 481


>gi|73540276|ref|YP_294796.1| acriflavin resistance protein [Ralstonia eutropha JMP134]
 gi|72117689|gb|AAZ59952.1| Acriflavin resistance protein [Ralstonia eutropha JMP134]
          Length = 1103

 Score =  150 bits (377), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 76/620 (12%), Positives = 171/620 (27%), Gaps = 57/620 (9%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + + +  IG+L+A    L    +   P                     L     + +   
Sbjct: 12  VATALLTIGILLAGLAALRLLPVSPLPQVDFPTI---------SVSASLPGASPETMAAT 62

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +     +        S      ++TL F  SR  +  A  V   +    + L   
Sbjct: 63  VATPLERALGTIAGVTEITSSSSLGSTRVTLQFDLSRDIDGAARDVQAAINASRATLPTS 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
              N          + ++    +        +           ++   E   Q       
Sbjct: 123 LPNNPTYRKVNPADAPIMI-IALTSPTMTRGQLYDAASTILSQKLSQVEGVGQVTIGGSS 181

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------------ 237
           L  +  E +P+ L +   +   +       N ++       R                  
Sbjct: 182 LPAVRVELNPTALNKYGISLEDVRNTISATNANRPLGTVENRTNNWQVYANDQAMKASDY 241

Query: 238 --------------------------------GNQYLVEDKVEISGIHLNGATANFDPKT 265
                                           G    V + V ++ I  +  T       
Sbjct: 242 MPLIIRYATPGTFSSASAGALIASTANATAVGGVSTKVVNGVTVTTITTSSGTTTVTSGA 301

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                  S     A         ++   +  + +            + +     +   T+
Sbjct: 302 TGGNNTTSGPNSFAVPVRLQDVASVVDSVQDIRNAGSANGKPSVLLVLNRSPGANIIETV 361

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +    +   L+          V          S    + T  I   LV++V+F+ +   +
Sbjct: 362 DRVRDMLPTLQKMIPGAISMEVMMDRTPTIRASLREVEHTLMISVALVIMVVFLFLRNVR 421

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
              +   ++ +++I T  ++ L G +L   S+  + +  G  VD  I+V E I     + 
Sbjct: 422 ATFIPSVAVPVSLIGTFGVMYLAGFSLNNLSLMALTIATGFVVDDAIVVLENISRHIEEG 481

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
                +   G      T+   +++ +   + L   G   G   + FAIT+ +SIL+S+  
Sbjct: 482 MKPLAAALRGAREVGFTVLSMSLSLIAVFIPLLMMGGIVGRLFQEFAITLSVSILVSLVV 541

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           +++    M   ++R    +            +   +   + R     +  S +  +  + 
Sbjct: 542 SLTTTPMMCARLLRTPVPEEERGRFFRASEHVFRWLHDSYARTLAVALRYSAVVWLVLLA 601

Query: 563 LLFTHGLNYGIDFKGGIQLG 582
            +  +   Y I  KG     
Sbjct: 602 TVALNVWLYVIVPKGFFPQQ 621



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 64/153 (41%), Gaps = 8/153 (5%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + M++++++R            + + +  T G   L G   N  ++ A+    
Sbjct: 402 LMISVALVIMVVFLFLR-NVRATFIPSVAVPVSLIGTFGVMYLAGFSLNNLSLMALTIAT 460

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +     +       +   E     +  S++     +P+ + G
Sbjct: 461 GFVVDDAIVVLENI---SRHIEEGMKPLAAALRGAREVGFTVLSMSLSLIAVFIPLLMMG 517

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
           G V      FAI ++  I+V+   S+    P++
Sbjct: 518 GIVGRLFQEFAITLSVSILVSLVVSL-TTTPMM 549



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/154 (20%), Positives = 64/154 (41%), Gaps = 5/154 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++   +   +   L  ++TL       L     F  EF++ A+  V+ LIG    + +++
Sbjct: 931  IVLGVLYESYVHPLTILSTLPSAGVGALLALLAFKTEFSIIALIGVILLIGIVKKNAIMM 990

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
             D            +S RD I ++        + T+MAA +  +P+A+    G  +    
Sbjct: 991  ID--FAIDAERREGLSPRDAIHRACLLRFRPILMTTMAALLGAIPLAIGRGDGAELRAPL 1048

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             I +  G+VV+   +++    + L +  WR K  
Sbjct: 1049 GISIVGGLVVSQLLTLYTTPVVYLTLDRWRLKVK 1082


>gi|167467176|ref|ZP_02331880.1| multidrug resistance protein MdtB [Yersinia pestis FV-1]
          Length = 887

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/542 (11%), Positives = 144/542 (26%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   G++           +   P                    +     
Sbjct: 19  RPVATTLFMIAILLAGII-----GYRALPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + ITL F  +   +    +V   +   
Sbjct: 65  PDVVTSSITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +          +L+   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPYPPIYNKVNPADPPILT-LAVTATAIPMTQVEDMVETRIAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +   +  L   +  +       N +                    
Sbjct: 184 VTLSGGQRPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS-------- 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   K+ +   D+                 I +          
Sbjct: 236 ------------VTLSANDQMKSAEEYRDLIIAYQNGAPIRLQDVATIEQGAENNKLAAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +  ++   T ++   +   L           V          S +  
Sbjct: 284 ANTQSAIVLNIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTSTIRASVNDV 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   ++ L+++ T A +  LG ++   ++  + +
Sbjct: 344 QFELLLAIALVVMVIYLFLRNAAATIIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F   
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMED 463

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA
Sbjct: 464 IVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIA 523

Query: 540 IQ 541
             
Sbjct: 524 HY 525



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  I ++ G  + +     ++     + L +      +   
Sbjct: 233 TRSVTLSANDQMKSAEEYRDLIIAYQNGAPIRLQDVATIEQGAENNKLAAWANTQSAIVL 292

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   V              +  EL+    
Sbjct: 293 NIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTSTIRASVNDVQFELL---- 348

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 349 --LAIALVVMVIYLFLR-NAAATIIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTIAT 405

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+    
Sbjct: 406 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFME 462

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 463 DIVGRLFREFAVTLAVAILISAVVSLTLTP 492


>gi|317474605|ref|ZP_07933879.1| AcrB/AcrD/AcrF family protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316909286|gb|EFV30966.1| AcrB/AcrD/AcrF family protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 1138

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/521 (12%), Positives = 147/521 (28%), Gaps = 44/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +GL+      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGLI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +         +I++ F      +  A  V  
Sbjct: 51  QGANAQTVLNSVIAPLEDQINGVENMMYMTSNAANNGSAEISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  + T   +   +++     ++                I +I   
Sbjct: 111 RVSMAQGLLPAEVTQVGVTTQKRQTSMLMVFSIYDEKDQYDIEFLENYANINLIPEIKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q     + ++      N       FG    R + 
Sbjct: 171 NGVGDATVLG-QDYSMRIWLKPDVMAQYKLIPSDVAGALAEQNIEAAPGQFGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                +I       
Sbjct: 227 SFQYTIRYKGRL-------------QQPEEFENIVIKALENGEVLRMKDIADIELGRLSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     + +             + +        
Sbjct: 274 NFNNTVNGHKAVSCIVYQMAGTNATQTISDLEQVLSKASETLPSGLKINIAQSANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVVKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   V 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARTASIDAMSELGGAIVSITLVMMSVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F G   G   R F +TM ++I  S   A+++  A+    
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGFSALNALTLSPALCAIF 494



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/310 (10%), Positives = 84/310 (27%), Gaps = 28/310 (9%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                       +         ++     N   + +    + V     +       +++ +
Sbjct: 816  MQGYFGGLYASNFNSFGKMYRVMIQAEPNATKNLESLSSIKVRNGNEMAPITQFVSIKKV 875

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               DI  +        ++        S      +  V K+             E+ G   
Sbjct: 876  YGPDIISRFNLYTSMKVMVAPASGYTSGQALAAIAEVAKESLPTG-----FAYELGGMAR 930

Query: 662  SRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALF 714
                      G+I     + +Y+ +      +   L  + +    L+       G  +L 
Sbjct: 931  EEAETSGSTTGLIFVLCFVFVYLLLSAQYESYILPLSVLLSVPFGLLGSFLFVSGIGSLG 990

Query: 715  GIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             I      +           A++ L+G    + +++ +     +      +S        
Sbjct: 991  NIPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFA---LDRRKMGMSITWAAVLG 1047

Query: 765  INETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + TS+A  + +LP+      G +   +       G+++     IFI   + +
Sbjct: 1048 AGARLRPILMTSLAMIVGLLPLMFASGAGANGNRTLGTSAIGGMLIGMILQIFIVPALFV 1107

Query: 822  FIYDWRAKNA 831
                 + K  
Sbjct: 1108 AFQYLQEKVK 1117



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 79/211 (37%), Gaps = 6/211 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      LE V  K +E +P     N            I + +  +I + I
Sbjct: 288 IVYQMAGTNATQTISDLEQVLSKASETLPSGLKINIAQSANDFLFASIHEVVKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I ++I        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R     +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SARTASIDAMSELGGAIVSITLVMMSVFVPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             F + MA  I  +A +++ ++  +      
Sbjct: 466 RQFGLTMAIAIGFSALNALTLSPALCAIFLK 496


>gi|312172888|emb|CBX81144.1| Multidrug resistance protein [Erwinia amylovora ATCC BAA-2158]
          Length = 1024

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/651 (11%), Positives = 164/651 (25%), Gaps = 38/651 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GLL           +   P       +             L    
Sbjct: 10  RPVATSLLTLALVLSGLL-----GFRMLPVASLPQMDFPVIV---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      ++ L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERALGRIAGVSEMTSSSSLGSTEVVLMFDFDRDINGAARDVQGAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L     +           + ++             +       Q   ++   +    
Sbjct: 116 QSLLPSGMPRRPSYRKVNPSDAPIMIMTLSSD-TFSPGQLYDYASTQLAQRLSQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  + +P  L     +   +       N  +       R           
Sbjct: 175 VTIGGSSLPAVRVDLNPQALFNQGVSLDAVRTTIANANVRRPQGAIDDR----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                            N +  T      +                 +   +  V +  +
Sbjct: 224 ---------QQRWWLKTNDELHTAAEYRPLVIRYHQGAAVRLQDVATVTDSVENVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     Q +   TI+        LR          + + +      S    
Sbjct: 275 SNARPAVLVVIRKSPQANVIDTIDRIRDEVPQLRKTIPAAIQLEIAQDSSATIRASLHEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + + A+  GLV++V+F  +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQSLAVSVGLVVLVVFAFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +  +G      T+   +++ +   + L   G 
Sbjct: 395 ASGFVVDDAIVVLENISRHVEAGLKPLQAALLGGREVGFTVVSMSVSLIAVFIPLLMQGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ +SI IS+  ++++   M   ++R    +           L+     
Sbjct: 455 IIGRFFREFAITLSVSIAISLVISLTLTPVMCARLLRSSAPRQQPRRRGFGRMLLVVQQG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                 R        L    +   L  +            Q        +      S   
Sbjct: 515 YGRALHRVLDHARWALLVFVASLGLTVYLFISMPKTFMPEQDTGRLMGFIQADQSTSFQA 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                +   +    +      + +  G       +   +K   T       
Sbjct: 575 MRSKVEHFMRVVHADPAVESVVGFTGGWETNSGAMFIALKPLSTRGDNAQQ 625



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L     + + +  T     L G   N  ++ A+    G+ V+D +VV + +
Sbjct: 351 AFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTVASGFVVDDAIVVLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +     +           E     V  S++     +P+ + GG +      FAI +
Sbjct: 411 ---SRHVEAGLKPLQAALLGGREVGFTVVSMSVSLIAVFIPLLMQGGIIGRFFREFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           +  I ++   S+ +  
Sbjct: 468 SVSIAISLVISLTLTP 483



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 97/254 (38%), Gaps = 6/254 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         +  S+  S Q  +          + +  L +   + V+ ++    + + 
Sbjct: 765  QMYVTNHQGQPIPLSSFASWQPANAPLSVEHEGLSAVSTLSFNLPEGVSLSQAAAAIDRS 824

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
            +T +   S+++ +      +  +     +  ++ +   + I + + ++ +   L  ++TL
Sbjct: 825  VTALGMPSSVRGSFSGTAAVFEQTQSSQLWLILAAIATVYIVLGMLYESYVHPLTILSTL 884

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   L    LF   F+L A+  +L LIG    + +++ D            +  R+ 
Sbjct: 885  PSAGMGALLALKLFNTPFSLIALIGILLLIGIVKKNAIMMVD--FALQAQRQDGMPVREA 942

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++        + T++AA +  LP+ +    G  +     I +  G+VV+   ++F   
Sbjct: 943  IFQASLLRFRPIIMTTLAAMLGALPLVLSSGDGAELRQPLGITIVGGLVVSQLLTLFTTP 1002

Query: 818  PILLFIYDWRAKNA 831
             + L++   R K  
Sbjct: 1003 VVYLYMDKLRRKPR 1016


>gi|292488735|ref|YP_003531622.1| multidrug resistance protein [Erwinia amylovora CFBP1430]
 gi|292899891|ref|YP_003539260.1| multidrug resistance protein [Erwinia amylovora ATCC 49946]
 gi|291199739|emb|CBJ46859.1| multidrug resistance protein [Erwinia amylovora ATCC 49946]
 gi|291554169|emb|CBA21381.1| Multidrug resistance protein [Erwinia amylovora CFBP1430]
          Length = 1024

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 77/651 (11%), Positives = 164/651 (25%), Gaps = 38/651 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GLL           +   P       +             L    
Sbjct: 10  RPVATSLLTLALVLSGLL-----GFRMLPVASLPQMDFPVIV---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      ++ L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERALGRIAGVSEMTSSSSLGSTEVVLMFDFDRDINGAARDVQGAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L     +           + ++             +       Q   ++   +    
Sbjct: 116 QSLLPSGMPRRPSYRKVNPSDAPIMIMTLSSD-TFSPGQLYDYASTQLAQRLSQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  + +P  L     +   +       N  +       R           
Sbjct: 175 VTIGGSSLPAVRVDLNPQALFNQGVSLDAVRTTIANANVRRPQGAIDDR----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                            N +  T      +                 +   +  V +  +
Sbjct: 224 ---------QQRWWLKTNDELHTAAEYRPLVIRYHQGAAVRLQDVATVTDSVENVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     Q +   TI+        LR          + + +      S    
Sbjct: 275 SNARPAVLVVIRKSPQANVIDTIDRIRDEVPQLRKTIPAAIQLEIAQDSSATIRASLHEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + + A+  GLV++V+F  +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQSLAVSVGLVVLVVFAFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +  +G      T+   +++ +   + L   G 
Sbjct: 395 ASGFVVDDAIVVLENISRHVEAGLKPLQAALLGGREVGFTVVSMSVSLIAVFIPLLMQGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ +SI IS+  ++++   M   ++R    +           L+     
Sbjct: 455 IIGRFFREFAITLSVSIAISLVISLTLTPVMCARLLRSSAPRQQPRRRGFGRMLLVVQQG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                 R        L    +   L  +            Q        +      S   
Sbjct: 515 YGRALHRVLDHARWALLVFVASLGLTVYLFISMPKTFMPEQDTGRLMGFIQADQSTSFQA 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                +   +    +      + +  G       +   +K   T       
Sbjct: 575 MRSKVEHFMRVVHADPAVESVVGFTGGWETNSGAMFIALKPLSTRGDNAQQ 625



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L     + + +  T     L G   N  ++ A+    G+ V+D +VV + +
Sbjct: 351 AFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTVASGFVVDDAIVVLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +     +           E     V  S++     +P+ + GG +      FAI +
Sbjct: 411 ---SRHVEAGLKPLQAALLGGREVGFTVVSMSVSLIAVFIPLLMQGGIIGRFFREFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           +  I ++   S+ +  
Sbjct: 468 SVSIAISLVISLTLTP 483



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 96/254 (37%), Gaps = 6/254 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         +  S+  S Q  +          + +  L +   + V+ ++    + + 
Sbjct: 765  QMYVTNHQGQPIPLSSFASWQPANAPLSVEHEGLSAVSTLSFNLPEGVSLSQAAAAIDRS 824

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
            +  +   S+++ +      +  +     +  ++ +   + I + + ++ +   L  ++TL
Sbjct: 825  VIALGMPSSVRGSFSGTAAVFEQTQSSQLWLILAAIATVYIVLGMLYESYVHPLTILSTL 884

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   L    LF   F+L A+  +L LIG    + +++ D            +  R+ 
Sbjct: 885  PSAGMGALLALKLFNTPFSLIALIGILLLIGIVKKNAIMMVD--FALQAQRQDGMPVREA 942

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++        + T++AA +  LP+ +    G  +     I +  G+VV+   ++F   
Sbjct: 943  IFQASLLRFRPIIMTTLAAMLGALPLVLSSGDGAELRQPLGITIVGGLVVSQLLTLFTTP 1002

Query: 818  PILLFIYDWRAKNA 831
             + L++   R K  
Sbjct: 1003 VVYLYMDKLRRKPR 1016


>gi|330503255|ref|YP_004380124.1| acriflavin resistance protein [Pseudomonas mendocina NK-01]
 gi|328917541|gb|AEB58372.1| acriflavin resistance protein [Pseudomonas mendocina NK-01]
          Length = 1034

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/492 (11%), Positives = 140/492 (28%), Gaps = 26/492 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L       +   +    +     +        +  Q   +I + F   +     A 
Sbjct: 47  VQANLPGASPQIMAATVATPLERSLGSIAGVNQMNSNSSQGSTRIMVEFDLDKDINTAAR 106

Query: 114 KVTLFLQGVNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
           +V   +      L    +           +  I++     D +     +           
Sbjct: 107 EVQAAINAARELLPSGMRTMPSYRKINPSQAPIMVISLTSDTLNKG--QLYDVASTILAQ 164

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           ++       +       L  +    +P  L Q      ++       N  K         
Sbjct: 165 KLSQVTGVGEVQVGGSSLPAVRVALEPRLLDQYGIALDEVRQAIAASNALKPKGAVEDPQ 224

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
            R        +    +                     + +                 +  
Sbjct: 225 RRWQVQASDQLAKAAD--------------------YMPMIIRYQNGAAVRLGDVATVTD 264

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            +    +            + + ++  +   TI         LR          V     
Sbjct: 265 GVEDRYNSGFYNDQEAVLLVINRQSGANILQTISDIRAELPALREVMPASVKLEVAMDRS 324

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                +    + T  I  GLV++V+   +   +  L+   ++ +++I + A + LLG +L
Sbjct: 325 PVIRATLHEAEQTLLIAVGLVILVVLAFLGRWRAALIPALAVPVSLIGSFAAMYLLGFSL 384

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
              S+  +++  GL VD  I+V E I    R  +    +   G      T+   N++ + 
Sbjct: 385 NNLSLMALIIATGLVVDDAIVVLENISRHIRNGEKPLDAALKGTREVGFTLLSMNLSLVA 444

Query: 473 ATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             + + F GG      R F++T+ ++++IS+  ++++   +    +R +  +S       
Sbjct: 445 VFISILFMGGIIERLFREFSLTLAVAVVISLLVSLTLTPMLCARWLRAEDEQSRSRLQQW 504

Query: 530 RFFLIPDCIAIQ 541
              +    +A  
Sbjct: 505 GDHVQERVLAFY 516



 Score = 89.8 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 85/282 (30%), Gaps = 9/282 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                        +        + + +       + +      +  + D     F  ++ 
Sbjct: 220 VEDPQRRWQVQASDQLAKAADYMPMIIRYQNGAAVRLGDVATVTDGVEDRYNSGFYNDQE 279

Query: 617 ---FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               ++  Q         + +   +      +     ++      P I   L       +
Sbjct: 280 AVLLVINRQSGANILQTISDIRAELPALREVMPASVKLEVAMDRSPVIRATLHEAEQTLL 339

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I   + +L+ +    +W  AL     + + +  +     L G   N  ++ A++   G  
Sbjct: 340 IAVGLVILVVLAFLGRWRAALIPALAVPVSLIGSFAAMYLLGFSLNNLSLMALIIATGLV 399

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+D +VV + +    +         D   K   E     +  +++     + +   GG +
Sbjct: 400 VDDAIVVLENI---SRHIRNGEKPLDAALKGTREVGFTLLSMNLSLVAVFISILFMGGII 456

Query: 794 ---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 F++ +A  +V++   S+ +   +         + +R
Sbjct: 457 ERLFREFSLTLAVAVVISLLVSLTLTPMLCARWLRAEDEQSR 498


>gi|91228866|ref|ZP_01262770.1| putative multidrug resistance protein [Vibrio alginolyticus 12G01]
 gi|91187578|gb|EAS73906.1| putative multidrug resistance protein [Vibrio alginolyticus 12G01]
          Length = 1040

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 73/609 (11%), Positives = 177/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    ++  +               ++ IT++   +         +      
Sbjct: 55  SANLIQGFITQPLEQAVAQADNIDYMTSQSVLGKSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPAKMGALKLTATDVMSVLNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                      +                 +    +  +   
Sbjct: 233 QVSNVAELEA--------------------LVVKTGEGDVIRLGDIAKVTLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLELLPQLERNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +++  +        +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKANEKPSKFEQKVHHILDGMTTR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +               I+F+   +   F        + KG + L   A    +L  
Sbjct: 513 YEGMLKAVMAHRPVVIAFAIIVFASLPVLFKFIPSELAPSEDKGVVMLMGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +++ ++ + 
Sbjct: 573 IQNTMDDVN 581



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +                   E            + +     +  +  ++   +
Sbjct: 251 DVIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELLPQLERNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + +  ++ +A+ +L+ I +    +   +  I T+ L + 
Sbjct: 311 PSNIKMNVMYDSTIAINESIHEVVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +     K ++
Sbjct: 488 MLKANEKPSK 497



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 68/183 (37%), Gaps = 7/183 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     +  + ++ L I   L 
Sbjct: 830  YNHDYMGESRQFVTEGSALYATFGLALAIIFLVLAIQFESLRDPIVIMVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++        +S  D + ++    L
Sbjct: 890  ALAWGTASMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAVMEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++ + 
Sbjct: 948  RPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYLAEK 1007

Query: 827  RAK 829
               
Sbjct: 1008 HKP 1010


>gi|323141744|ref|ZP_08076616.1| heavy metal efflux pump, CzcA family [Phascolarctobacterium sp. YIT
           12067]
 gi|322413781|gb|EFY04628.1| heavy metal efflux pump, CzcA family [Phascolarctobacterium sp. YIT
           12067]
          Length = 1019

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 64/520 (12%), Positives = 151/520 (29%), Gaps = 41/520 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++Y ++C +GL+        +  ++  P    K              +     
Sbjct: 9   KRPIGICMIYILVCVLGLIS-----FFRIGVELLPDVDSKFI---------SVIVNYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S +        + R  + +I +        + +A + T  +  
Sbjct: 55  STESVEQQVTKPIEDELSSISHFKQVRSATRPGRAEIFVELDSQADADMVAIEATKKVSR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D  +  ++  + +E  I+         +      +    ++R   +  +    
Sbjct: 115 IRKNLPEDIDEPAVLKRSSEEYPIIQIAATSKDNLDDIFALADSSFKER---LQQAAGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     ++  E D  +L     T   +       N            L  +   Q 
Sbjct: 172 DVDVTGGRTKEVAIEVDKDKLNYYGLTLQDIITAVRKENVIVSSGSVYTDALEKTVRLQA 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   EI                      +     G R        N+       +   
Sbjct: 232 QYKAPEEIQ--------------------HLQLKGAGGRYIELGQVANVQAKDKRAVAYS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +             +  +   T +        LR         +           S S 
Sbjct: 272 RVDGNEAVSLEVYKASGANIVDTADGVLQQLETLRKDYPDYVFTV-VYDQSHFVRDSLSN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T          VL++ +   K  +    +I  ++I T  L+ L G T  + S+ G+ 
Sbjct: 331 TLKTLLEGLVTTGFVLYLFLRGWKSSMAVMIAIPTSLIATFFLMYLAGFTFNMMSLMGMA 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IG+ VD +I+V E I       +S   + + G +          +  ++  + + F  
Sbjct: 391 LCIGILVDDSIVVLENIHRFLAMGKSADVAAEEGRNEIGMAAIAMTLCDVVVFLPIAFMQ 450

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
              G   + F +T+  + L+S+  + ++   +     +  
Sbjct: 451 SATGQFFKQFGMTIVFATLMSLVVSFTLTPMLASRFYKNG 490



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 75/247 (30%), Gaps = 10/247 (4%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            ++L  V +     +      +    E   L   +    + V     +    + + +  P
Sbjct: 251 YIELGQVANVQAKDKRAVAYSRVDGNEAVSLEVYKASGANIVDTADGVLQQLETLRKDYP 310

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                        +   L       +        +       W  ++  +  +   +  T
Sbjct: 311 DYVFTVVYDQSHFVRDSLSNTLKTLLEGLVTTGFVLYLFLRGWKSSMAVMIAIPTSLIAT 370

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G  FN+ ++  +   IG  V+D +VV + +    +      S     ++  NE
Sbjct: 371 FFLMYLAGFTFNMMSLMGMALCIGILVDDSIVVLENIH---RFLAMGKSADVAAEEGRNE 427

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               ++  ++   +  LP+A      G     F +     IV A   S+ ++  +   + 
Sbjct: 428 IGMAAIAMTLCDVVVFLPIAFMQSATGQFFKQFGMT----IVFATLMSLVVSFTLTPMLA 483

Query: 825 DWRAKNA 831
               KN 
Sbjct: 484 SRFYKNG 490



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 54/141 (38%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              +     + +L L I   +    L     NL ++  +L + G    +  ++ D     +
Sbjct: 877  SVFTPFIRMFSLPLGIIGAIFCLLLTHNTINLYSLIGILVMDGLVAKNGTLLLD---YTL 933

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L    ++ +  + ++    L     T++   + +LP A+    G     S A  +  G+
Sbjct: 934  TLMHEGMTAKAAVIEAGKTRLKPIFMTALTMVVGMLPTALSLSAGSETRVSMAWVIIGGM 993

Query: 806  VVAASSSIFIAAPILLFIYDW 826
            + +   ++ +   + L++ + 
Sbjct: 994  ITSTVFTLLVLPILFLWLKEK 1014


>gi|237800665|ref|ZP_04589126.1| acriflavin resistance protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023524|gb|EGI03581.1| acriflavin resistance protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 1035

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/516 (11%), Positives = 146/516 (28%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I  +G +           +   P+      +             L   
Sbjct: 9   RRPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q   +I L F   R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSLGSIAGVNTMTSNSSQGTTRIILQFDLERDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDIASTILSQSLSQVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q   +   +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPQMLSQYGISLDDVRTAITGSNVRRPKGFVEDDQHNWQVQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 +   +    +  
Sbjct: 234 QLETAKD--------------------YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         LRA         +          +   
Sbjct: 274 FYNNDQAVFLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G      T+   N++ +   + + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIHNGLDPMKAAFLGAREVGFTLLSMNVSLVAVFISILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F+IT+ ++I++S+  ++++   +    
Sbjct: 454 GLVESLFREFSITLSVAIIVSLIVSLTLTPMLCARW 489



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAREVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVAI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           +V+   S+ +   +      
Sbjct: 472 IVSLIVSLTLTPMLCARWLK 491



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 97/262 (37%), Gaps = 9/262 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  RDPVTLEQVQVITSDGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   + I +                   ++ S +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPADIISKMAGTANAFASTQESQPWMILGSLLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLERDQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++ +D I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPQDSIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQI 999

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    + L++   R +  +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHRYNK 1021


>gi|289548328|ref|YP_003473316.1| acriflavin resistance protein [Thermocrinis albus DSM 14484]
 gi|289181945|gb|ADC89189.1| acriflavin resistance protein [Thermocrinis albus DSM 14484]
          Length = 1004

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/615 (11%), Positives = 169/615 (27%), Gaps = 44/615 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +       +GL       L    LDR P                         +
Sbjct: 8   RPVTTWMFMLSFILLGLYS-----LRGIPLDRLPDVDFPVV---------SVVTTYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V+  +    ++  + +              ++IT++F+  +  +  A +V   +Q  
Sbjct: 54  PYVVDVNVTRVIEDQLATINGIEAITSQSFAGTSRITVTFSLEKDIDVAAQEVRDAVQRA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       ++         ++    +           +    +    +        Q
Sbjct: 114 MKQLPPGVDPPVVRKVDTSLAPVLAVLLHSPTADYQT--LAYWADKVIKREFERISGVGQ 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP +L         +                              
Sbjct: 172 VDLGGFRDNVMWVRIDPEKLYGRQLAVTDVLEAIQKNYLDAPAGAIYGTKRDYILRLYGK 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D  E+  I +                                                
Sbjct: 232 ARDSKELEEIFITPN------------------------VRLGDVGYAYFGEDEKRGMAR 267

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +++ +   T++        L     P     +   +      S    
Sbjct: 268 FMGEQAIAIVIYKQSKTNTVATVDAVKAKMEELSRQLPPGLRMDITFDSSVFVKDSVKAA 327

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I + L  +V+++ +   +  LV  F+I + ++ T+ LL  LG +L   ++  + +
Sbjct: 328 IEEIVIGSLLTALVVYVFLGRLRLTLVPVFAIPVTLLGTVFLLRELGLSLNTFTLLALAV 387

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G+ +D  I+V E I     +      + ++G       +  S  + +I  + + F   
Sbjct: 388 AVGIVIDDAIVVLESIYRRREEGLEPLQAGEIGTRIVIFALLASTASLVIVFLPVIFLKG 447

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FA+T+ L+I +S   A+S     +  +++ K  +++ +   + F    D   
Sbjct: 448 VVGKLFGNFALTLVLAIALSYIVAVSFTPMAVSRLVKEKGEENLFVKLYASFEERFDSWL 507

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
              +  +   + +S +        L      +        +  V    PV  S   +  +
Sbjct: 508 RWSLDHKITVLLLSAVAVGVGFVFLRMTPKEF-FPLVDEGRFLVRFETPVGSSFDYTESK 566

Query: 600 SLQIGDISFQNFDGE 614
           + QI DI  +N   +
Sbjct: 567 ARQIEDILKKNPYVD 581



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/171 (18%), Positives = 77/171 (45%), Gaps = 8/171 (4%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
             R   + + ++ + + + +   F+ + + L  +  + L +  + G   + G   ++ +  
Sbjct: 838  FRGMGLALFVALLGVYMVLASLFESYRYPLIVLLMVPLAVMGSFGLLLVSGTSLSVPSYF 897

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ L+G  V D V+  +R+   ++L T  +  R+ I ++  E L   + T++    S+ 
Sbjct: 898  GIILLVGIIVRDAVLFIERI---IQLQTEGLPVREAILQARRERLRPILMTTLTVVASLT 954

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+A+    G  +    A+ +  GI      S+F+  P+L  I   + +  R
Sbjct: 955  PVALGLTAGSELRKPLALAVIGGIFSGLPLSLFLL-PVLYEITSRKVRYNR 1004



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 86/251 (34%), Gaps = 7/251 (2%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           YG          +     V L  V              +    +   +V  +    ++VA
Sbjct: 229 YGKARDSKELEEIFITPNVRLGDVGYAYFGEDEKRGMARFMGEQAIAIVIYKQSKTNTVA 288

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-K 689
               ++   ++++  +P     +         ++ ++  I  ++I ++   + +++   +
Sbjct: 289 TVDAVKAKMEELSRQLPPGLRMDITFDSSVFVKDSVKAAIEEIVIGSLLTALVVYVFLGR 348

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  +  + + +  T+      G+  N   + A+   +G  ++D +VV + +    +
Sbjct: 349 LRLTLVPVFAIPVTLLGTVFLLRELGLSLNTFTLLALAVAVGIVIDDAIVVLESI---YR 405

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
                +      +      +   + ++ +  I  LP+    G V     +FA+ +   I 
Sbjct: 406 RREEGLEPLQAGEIGTRIVIFALLASTASLVIVFLPVIFLKGVVGKLFGNFALTLVLAIA 465

Query: 807 VAASSSIFIAA 817
           ++   ++    
Sbjct: 466 LSYIVAVSFTP 476


>gi|254670810|emb|CBA07182.1| protein-export membrane protein SecD [Neisseria meningitidis
           alpha153]
          Length = 368

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 81/208 (38%), Gaps = 4/208 (1%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G           +  +   +     I     +GP + +E I KG    +     + 
Sbjct: 144 VEISGSMTTAEANDTSLLLRAGSLAAPMQIVEERTIGPSLGKENIEKGFHSTLWGFAIVA 203

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            ++ + ++      +   L  +I   +G  +       L  +AA+   +G +++  V++ 
Sbjct: 204 AFMVVYYRL-MGFFSTIALSANILFLIGILSAMQATLTLPGMAALALTLGMAIDSNVLIN 262

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R+ ++     +  +  I+          V +++ + I+ + + V+G   +  FA+  
Sbjct: 263 ERIREELRA---GVPPQQAINLGFQHAWATIVDSNLTSLIAGIALLVFGSGPVRGFAVVH 319

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GI+ +  SS+ +   ++   Y  R K
Sbjct: 320 CLGILTSMYSSVVVFRALVNLWYGRRRK 347


>gi|229524879|ref|ZP_04414284.1| RND multidrug efflux transporter [Vibrio cholerae bv. albensis
           VL426]
 gi|229338460|gb|EEO03477.1| RND multidrug efflux transporter [Vibrio cholerae bv. albensis
           VL426]
          Length = 1036

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/597 (12%), Positives = 174/597 (29%), Gaps = 42/597 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAIF-----KMQVREYPEMTNTVIT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      +++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNELASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  + A +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++                      +                 +    +      
Sbjct: 233 QVSTVEDLE--------------------SLVVKAEKGTVTRLGDIAKVTLAKSHDTYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 273 SANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLIP 535
              G   + FA+T+  S+ +S   A+++   M   +           + ++ L       
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTAR 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               +  + A    V         S+ +LF    +     +    + ++   P + +
Sbjct: 513 YERMLTAVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNAN 569



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 79/791 (9%), Positives = 211/791 (26%), Gaps = 36/791 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                     ++L S +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 229  SADTQVSTVEDLESLV--VKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 286

Query: 126  LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                   N+     E    +   + S   ++ +    +  +    E+I+  ++   I   
Sbjct: 287  APSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLV 346

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 347  VITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 404

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 D+    G     A      +   PV+ ++           +     G        
Sbjct: 405  VLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL 464

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                +  V      +    +               L+   L  ++    ER + A +   
Sbjct: 465  TLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHR 524

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
             +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 525  PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKIL 584

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                 +     +      N+     +    S   +     +    T+        +    
Sbjct: 585  SDQPEVQFAQVITGVPNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTA-- 642

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             F        G  + +   I            A  +          +  +    F     
Sbjct: 643  -FQMPELPGAGSGLPIQFVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATM 701

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
             I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 702  KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 761

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
            S       G +         + +   +  P  +   +  +  V    T +          
Sbjct: 762  SYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENL 821

Query: 652  --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 822  ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   A      N+ +   ++TL+G      +++ +  ++        +S  + +
Sbjct: 882  LAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIEAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
              +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 940  MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 999

Query: 819  ILLFIYDWRAK 829
            I  ++ +    
Sbjct: 1000 IYSYLAEKHKP 1010



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 83/244 (34%), Gaps = 7/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +     +             E            + +   + +  +  ++ + +P +   
Sbjct: 257 DIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEM 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N          E I + I  ++ +A+ +L+ I +        L  I T+ L +       
Sbjct: 317 NVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G  +NL  + A++  IG  V+D +VV + +    +      S          E    
Sbjct: 377 QMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGTREIAIP 433

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   +     
Sbjct: 434 VIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANE 493

Query: 829 KNAR 832
              +
Sbjct: 494 APNK 497


>gi|294793800|ref|ZP_06758937.1| hydrophobe/amphiphile efflux-1 family protein [Veillonella sp.
           3_1_44]
 gi|294455370|gb|EFG23742.1| hydrophobe/amphiphile efflux-1 family protein [Veillonella sp.
           3_1_44]
          Length = 1060

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/667 (11%), Positives = 181/667 (27%), Gaps = 34/667 (5%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +GL+  +        + R+P   P              +          VN  +    
Sbjct: 20  TLVGLISMM-----NLPIARYPQISPPTVR---------VNTAYTGATAQVVNDTVASVI 65

Query: 75  DELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           +     ++       S     +  +T+ F      +         +Q   ++L  + +  
Sbjct: 66  ETQIVGVQDMDYMTSSSSSNGSYSLTVQFNQGTDADMDTVNTQNRVQAALAQLPAEVQAV 125

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            + TT       ++   N       +           +D I   +              +
Sbjct: 126 GVTTTKSSGDMAMVFSLNSPDGTYDSTFLKNYATNYMMDAIKAIKGVGSVQEFGS-DYAM 184

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP++++ L  T ++++      N        G          QY ++ +  +    
Sbjct: 185 RIWLDPAKMQNLGVTISEVTAAIKGQNLQAAAGTVGQNPTNGEQAFQYPIKIEGRL---- 240

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                      T +   +I+      +         I                 +     
Sbjct: 241 ----------VTPEQFGNIAIKSSNGKVLHLKDVARIQIGAKGYDFIAKSAHKEVAGFAI 290

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
           S +   +   TI     +         P     V   N      S +  + T      LV
Sbjct: 291 SLQNDANALETIANVKKVLDEQSKSFPPDMQYNVVVDNTKFVSASINEVEHTFVEALLLV 350

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           L V+++ +   +  ++   ++ ++++ T     LL  ++   ++  +VL IGL VD  I+
Sbjct: 351 LFVVYVFLQSWRSTIIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIV 410

Query: 434 VNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           V E +  E          +           +       +   V + F GG      + FA
Sbjct: 411 VVEAVEYELKYNGLPPKEAAIKAMENVQGPVIGIAFVLVAVFVPVAFMGGMTGILYKQFA 470

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +T+ +S++IS   A+ +  A+   +++    K  +     +       +           
Sbjct: 471 LTIAVSVVISAIVALVLTPALCATMLKPHTPKEREDLVHCQLNKFNAGLERFSNWYGIQL 530

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
             +S   S+  I LL   G    +            +    +  V     +     ++  
Sbjct: 531 ARLSHRLSLTVIALLIFAGGTGLVFHFLPTSFVPAEDSGYYMIAVNEPPGATSERTMATL 590

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                         +P D      V  +    +      S+                +  
Sbjct: 591 EKIASFLEGKNDPEKPKDEQLFQEVFTVAGFDLLGGGQKSSAGVIFATMSDWKYRTTQAT 650

Query: 670 IVGVIIS 676
            +  ++ 
Sbjct: 651 SINAMVG 657



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  +  + + +  T G F L     N   + A++  IG  V+D +VV + +    
Sbjct: 360 SWRSTIIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIVVVEAV--EY 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +L    +  ++   K++    G  +  +       +P+A  GG        FA+ +A  +
Sbjct: 418 ELKYNGLPPKEAAIKAMENVQGPVIGIAFVLVAVFVPVAFMGGMTGILYKQFALTIAVSV 477

Query: 806 VVAASSSIFIAAPI 819
           V++A  ++ +   +
Sbjct: 478 VISAIVALVLTPAL 491



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 65/167 (38%), Gaps = 12/167 (7%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF------NL 720
            + I+ + +  + + + +   ++ W      + ++   +        L           ++
Sbjct: 881  QTIMILGLGLVFVFLILAALYESWKVPFAVLFSVPSGMIGASLVPFLLNFTGRYSLANDI 940

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 +LTL+G +  + +++ +  +  +++    ++  D   ++    L   + TS A  
Sbjct: 941  YMQIGLLTLVGLAAKNAILIIEYAK--IRVDERGMNVVDAAIEAAKIRLRPILMTSFAFI 998

Query: 781  ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            + VLP+AV    G     S  I +  G+  A    IFI   + + I 
Sbjct: 999  LGVLPLAVSTGAGSGARTSMGITVVAGMTTATLFGIFIIPMLFIIIE 1045


>gi|314962660|gb|EFT06760.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL082PA1]
          Length = 552

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 118/538 (21%), Positives = 209/538 (38%), Gaps = 51/538 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +LVI+  M   +G++                +  P     LGLDLRGG+ + L    +D
Sbjct: 2   IFLVIIIVMYVLMGVM---------------RTWSP----KLGLDLRGGTSVTLTAKTED 42

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTL 117
                   L+     +   +   G+G  S++ + ++ I +S  +       E +     L
Sbjct: 43  GKAPSATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQL 102

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             + V ++  V  K            S + +        +     +             +
Sbjct: 103 GFRMVYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDASASSKGGTTSSASQYN 162

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q         +        +        AK                       D +
Sbjct: 163 EKDPQSAAKMVKAAEEWKPTPEDQKAFEDYKCAKSVDTPSDKP----------LVTCDRE 212

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +   V I+G  +  A +         VV++ F+ +G   F + T     K     
Sbjct: 213 RTMKYLLSPVAITGTQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSPQN 272

Query: 298 LDGRVLTAPVINQAIPSGK-----------AQISGNFTIETAGILAAMLRAGSLPIKLNI 346
               VL   VI+    +G            AQISG+FT  +A  LA +L+ G+LP+  +I
Sbjct: 273 QFAVVLDGKVISSPQLNGNTGTSCPINGGEAQISGHFTQNSAADLANVLKYGALPLSFDI 332

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
               N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A + 
Sbjct: 333 SSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAAMV 392

Query: 407 LL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
           LL    G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A  T
Sbjct: 393 LLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKARGT 452

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           I  ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 453 ILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFW 510



 Score = 94.8 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 329 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 387

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 388 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIRE---GRTLRTALQT 444

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 445 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 504

Query: 824 YDWR 827
              R
Sbjct: 505 GRTR 508


>gi|307823111|ref|ZP_07653341.1| acriflavin resistance protein [Methylobacter tundripaludum SV96]
 gi|307735886|gb|EFO06733.1| acriflavin resistance protein [Methylobacter tundripaludum SV96]
          Length = 1059

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 67/548 (12%), Positives = 147/548 (26%), Gaps = 39/548 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     ++   +I       + P  L     D FP         L  D +G        
Sbjct: 8   LRRPYTFIVAALLILL-----STPYVLRNMPTDIFPDIDIPVVAML-WDYKGM------- 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   L    +   S +                I + F           +V     
Sbjct: 55  -NSKEIADRLTGSVERSMSLIDGIEHSESVSYAGSAVIKVFFHPGTDIRTAIAQVMSSSN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L        ++  +  ++ +V    +   V     E +        + +      
Sbjct: 114 SVYRSLPASTAPPQVIQYSASDLPLVQLGISSSIVPE--TEVNDLTNNIVRNFLQSKPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+  + DP+ L     T + +     + N         V          
Sbjct: 172 ASTNPFGSKSRQVTVDIDPAALLARGLTPSDLVDAMAVQNLILPTGTIKVGSTEYDVTLN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I                     DI    +           N+    A     
Sbjct: 232 GAIAAIPRIG--------------------DIPVRTVNGTTTLIRDVANVRDGSAPQTTI 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          + ++S    ++        + A         +          +  
Sbjct: 272 ARQNGERGILTSIFKRGKVSTLDVVDHVRQSIPKMLAQMPEGINMKLMFDQSLFVKAAIG 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I AGL   ++ + +   +   +   SI L+++ +L +L L+G T+ L ++ G+
Sbjct: 332 NVIHEGLIAAGLTAAMILLFLGNWRSTCIIAVSIPLSIMCSLIVLYLIGETINLMTMGGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   +  E I  +    ++   ++  G +      F S +   I  V +FF 
Sbjct: 392 ALAVGVLVDDATVEIENIERQMLMGKNPRQAILDGAAEIAMPAFVSTLCICIVFVPMFFL 451

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G A       A  +  ++L S   + ++V  ++++++     +       +   +    
Sbjct: 452 TGVAHSLFVPMAEAVVFAMLASYLLSRTLVPTLVMYMMAGHHGRKHQPPANAIARIFKQT 511

Query: 538 IAIQFMRA 545
                   
Sbjct: 512 HHAFEHGF 519



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 75/191 (39%), Gaps = 7/191 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           + +  +  ++ E + +  + +  +        +I +G++   ++A  +L+++     W  
Sbjct: 301 QSIPKMLAQMPEGINMKLMFDQSLFVKAAIGNVIHEGLIAAGLTAAMILLFLG---NWRS 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                 ++ L I  +L    L G   NL  +  +   +G  V+D  V  + +    +   
Sbjct: 358 TCIIAVSIPLSIMCSLIVLYLIGETINLMTMGGLALAVGVLVDDATVEIENI---ERQML 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              + R  I     E    +  +++   I  +PM    G    S  +PMA  +V A  +S
Sbjct: 415 MGKNPRQAILDGAAEIAMPAFVSTLCICIVFVPMFFLTGVA-HSLFVPMAEAVVFAMLAS 473

Query: 813 IFIAAPILLFI 823
             ++  ++  +
Sbjct: 474 YLLSRTLVPTL 484


>gi|218961335|ref|YP_001741110.1| outer membrane efflux protein (fragment) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167729992|emb|CAO80904.1| outer membrane efflux protein (fragment) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 1035

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/672 (10%), Positives = 186/672 (27%), Gaps = 42/672 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +   +    G+L           ++  P       +            V     
Sbjct: 17  RPVLVTMAIMVFIVFGVLA-----YFSLPINLMPDLKLPYVV---------VQTVYSGAG 62

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +E  + + +         +  + + ++F   +  +    +V   +  +
Sbjct: 63  PREIESQVTEPIEEAVATVSQIDFMQSYSMENMSIVLVAFKLGKNIDVANQEVKDKVDAI 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L     + +++        I+    + +       E +        D++       +
Sbjct: 123 IRNLPDGTDRPIVLKMDITAFPIMDLVLSGNMPPKDLYELAD---GTLKDRLSQIPGVAR 179

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+        + +   + A++S      N    G  F           Q  
Sbjct: 180 VSLIGGAKRQIDVRLTDKVVFENKISLAQLSAILAAANLDMPGGNF----------TQGT 229

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            E  V + G + +              V     ++      E   + +          + 
Sbjct: 230 QEYSVRLKGEYQDVEDIRNTDIPTVFGV----KKLSQLARVEDATEEVRSKAIYFNVPKN 285

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +    I +   +  A  +     E       +L           +   +      + +  
Sbjct: 286 VKDENIVRLSITNAADGNVVNIAEEVTKQIPILNKELPEGVKLEIMRDDSIFTKDTINST 345

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +      I+LF+ +   +  L+   S+   +I T   + + G T  + ++ G+  
Sbjct: 346 LENILLGILFTGIILFIFLHDFRSTLIVAISMPYCIISTFVFMQIFGYTFNIMTMMGLST 405

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+ V ++++V E I        +   +  +G +   + +  S +T ++  + +     
Sbjct: 406 SIGILVSNSVVVLENIFRHKDMGNTRKVAAQIGTNEIGTAVLASTLTNIVVFLPIATMTS 465

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 + FA+T+ ++ L S+ TA +I   +   II  +K  S         F       
Sbjct: 466 MVGRFFKEFAVTVTMATLFSLLTAFTITPMLASKIIPKEKRTSKWGRKFDNVFDKFGNYY 525

Query: 540 IQFMRARFWGVGISILFSIC--------SICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            +F+         S+   +              F          +  + + V   +  +L
Sbjct: 526 AKFLGYTLRSKRTSVSILLFTLLALLISCGLAFFVGMEMIPPVDQRNLSISVEMPQGTNL 585

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +     ++ +Q      +        L    +    +   T  +++V +   E       
Sbjct: 586 NETAKTMDIVQNRVAQHKEVVHILTNLGSGSFIDTGTNLATSDIKLVDRNEREYTANQLA 645

Query: 652 QNTEIVGPKISR 663
                    I  
Sbjct: 646 DILTKELSDIPN 657



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 80/245 (32%), Gaps = 7/245 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                        ++     D     L       G+ V     +      + + +P    
Sbjct: 268 DATEEVRSKAIYFNVPKNVKDENIVRLSITNAADGNVVNIAEEVTKQIPILNKELPEGVK 327

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
                     +++ I   +  +++  +   I ++I    +   L    ++   I  T  F
Sbjct: 328 LEIMRDDSIFTKDTINSTLENILLGILFTGIILFIFLHDFRSTLIVAISMPYCIISTFVF 387

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +FG  FN+  +  + T IG  V++ VVV + +    +      + +       NE   
Sbjct: 388 MQIFGYTFNIMTMMGLSTSIGILVSNSVVVLENI---FRHKDMGNTRKVAAQIGTNEIGT 444

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + +++   +  LP+A      G     FA+ +    + +  ++  I   +   I    
Sbjct: 445 AVLASTLTNIVVFLPIATMTSMVGRFFKEFAVTVTMATLFSLLTAFTITPMLASKIIPKE 504

Query: 828 AKNAR 832
            + ++
Sbjct: 505 KRTSK 509



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 93/245 (37%), Gaps = 10/245 (4%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V+  +   +S +     +  I  I+  +      F   +      S   +++ E + K 
Sbjct: 785  VVVMGKSYLVSQLADVQFASGINRITHYDRYKTVMFTGDVASGYTMSDITSQIEERLDKI 844

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                           +  + + ++IR  I+ VI++    ++   I   +      + T+ 
Sbjct: 845  KFPTGYRYQWGGQAKMMSETTVDMIRTFILAVILTY---MLLAAILESFAQPALILATVP 901

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L +   +    + G  FN+ ++ A++ L+G  VN+ +++ D +           S  D +
Sbjct: 902  LALIGVILSLLITGNTFNIVSMMAIIMLVGIVVNNAILIMDYVN---IKRREGYSVHDAL 958

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV----WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             ++    L   V +++A  + +LPMA+     G  +     I    G++V+   ++ I  
Sbjct: 959  MEAGKMKLKPIVMSTLAIIVGMLPMAIGIGSTGAEMTRPMGIVSIGGLIVSTFLTLIIIP 1018

Query: 818  PILLF 822
                 
Sbjct: 1019 AFYFL 1023


>gi|145297144|ref|YP_001139985.1| multidrug resistance protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142849916|gb|ABO88237.1| multidrug resistance protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 1026

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/609 (11%), Positives = 179/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + L  +I  +G          +  +  +P                         
Sbjct: 9   KRPVLAISLSFLIALLGFQAIF-----KMQVREYPEVTNTVIT---------VSTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S +   + +T     +         +   +  
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSSSQLGSSTVTAFMKLNTDPNAALSDILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   + ++T    +++       ++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPSVTSSTGSTTAVLYLGFTSPELSSS--QITDYLERVIKPQLFTVGGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++     T + +       N           F   +   + 
Sbjct: 173 KVDLYGGVEFALRVWLDPAKMAAFNLTASDVMTVLNSNNYQSATGQATGYFTLFNGNAET 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V D  E+                      +       +         +    +  +   
Sbjct: 233 QVSDTDELK--------------------RLVVATRDGKVIRLSDIAKVTLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +          L   L++         V   +  A   S   
Sbjct: 273 SANGREAVVMAVNAAPTANPINIAHDVLELMPSLKSNMPSTMQTNVLYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I  + ++ L G ++ L ++  +V
Sbjct: 333 VIKTILEAAAIVLVVITLFLGSFRAVIIPIITIPLSLIGVVMMMDLFGFSINLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +  F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKQGEEPFRAAIIGTREIAVPVIAMTVTLAAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFFL 533
              G   + FA+T+  ++ +S   A+++   M   +++  +       ++          
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIIALTLSPMMCAKMLKANEKPGKFESTVHHLLERMTDR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     +     V   I+F    +   F        + KG + +   A    +L  
Sbjct: 513 YDSMLHAVMQKRIVVLVFAVIVFGSLPLLFKFIPSELAPSEDKGVMAVLGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           + + +  + 
Sbjct: 573 IENTMADVN 581



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     + + LS +                   E   +        + +     +  + 
Sbjct: 244 VVATRDGKVIRLSDIAKVTLEKSHDIYRASANGREAVVMAVNAAPTANPINIAHDVLELM 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
             +   +P +   N          E I + I  ++ +A  +L+ I +    +   +  I 
Sbjct: 304 PSLKSNMPSTMQTNVLYDSTIAINESIHEVIKTILEAAAIVLVVITLFLGSFRAVIIPII 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +   +    LFG   NL  + A++  IG  V+D +VV + +    +         
Sbjct: 364 TIPLSLIGVVMMMDLFGFSINLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKQGEEPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVIAMTVTLAAVYAPIALMGGITGSLFKEFALTLAGAVFVSGIIALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +     K  +
Sbjct: 481 SPMMCAKMLKANEKPGK 497



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 69/177 (38%), Gaps = 7/177 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               + +G           +     ++   + + + I+F+     L  + ++ L I+  L 
Sbjct: 830  YRYDFMGEARQFVTEGNALYATFALALAIIFLVLAIQFESVRDPLVIMVSVPLAISGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++   L+   ++  + + ++    L
Sbjct: 890  ALAWGMATMNIYSQVGLITLVGLITKHGILICEVAKEEQLLH--GMNRMEAVMQAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               + T+ A    ++P+    G+      S  I +  G+ +    ++F+   I  ++
Sbjct: 948  RPILMTTAAMIAGLIPLLYAAGAGAAQRFSIGIVIVAGLAIGTIFTLFVLPVIYTYL 1004


>gi|314931741|gb|EFS95572.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL067PA1]
          Length = 552

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 117/540 (21%), Positives = 206/540 (38%), Gaps = 55/540 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +LVI+  M   +G++                         LGLDLRGG+ + L    +D
Sbjct: 2   IFLVIIIVMYVLMGVM-------------------RTRSPKLGLDLRGGTSVTLTAKTED 42

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTL 117
                   L+     +   +   G+G  S++ + ++ I +S  +       E +     L
Sbjct: 43  GKAPSATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQL 102

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME--IIRQRIDQIG 175
             + V ++  V  K            S + +        +     +           Q  
Sbjct: 103 GFRMVYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDASASSKGGTTSSASQYN 162

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +               P  +D                       S            D
Sbjct: 163 EKDPQSAAKMVKAAEEWKPTPEDQKAFEDY------------KCAKSVDSPGDKPLVTCD 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +     +   V I+G  +  A +         VV++ F+ +G   F + T     K   
Sbjct: 211 RERTMKYLLSPVAITGTQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSP 270

Query: 296 VVLDGRVLTAPVINQAIPSGK-----------AQISGNFTIETAGILAAMLRAGSLPIKL 344
                 VL   VI+    +G            AQISG+FT  +A  LA +L+ G+LP+  
Sbjct: 271 QNQFAVVLDGKVISSPQLNGNTGTSCPINGGEAQISGHFTQNSAADLANVLKYGALPLSF 330

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
           +I    N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A 
Sbjct: 331 DISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAA 390

Query: 405 LSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           + LL    G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A 
Sbjct: 391 MVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKAR 450

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            TI  ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 451 GTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFW 510



 Score = 95.1 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 329 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 387

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 388 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIRE---GRTLRTALQT 444

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 445 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 504

Query: 824 YDWR 827
              R
Sbjct: 505 GRTR 508


>gi|319779589|ref|YP_004130502.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Taylorella equigenitalis MCE9]
 gi|317109613|gb|ADU92359.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Taylorella equigenitalis MCE9]
          Length = 1024

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/523 (11%), Positives = 143/523 (27%), Gaps = 42/523 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-- 59
           +      ++   +   GL            +   P                   +  E  
Sbjct: 9   KKPIATTLIMIALLIAGLFT-----YKNLPISALPDVDYPT-----------IQVTTEFP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 +   +    ++    +      + +     + ITL FA +        +V   L
Sbjct: 53  GASPKIIEKLITSPLEKQLGQMSGLEQMISTSSAGVSLITLRFALNVEMSVAEQEVQAAL 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
              ++ +  +     +        + V++   I        E    +  + +  +     
Sbjct: 113 NTASNSIPSELPSPPVYNKVNPADTPVIT-LAITSDTLPLHEVRDLVETRILQDLSQISG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                 +         + +P  L     T A +       N +                 
Sbjct: 172 VGLVNVAGGQKPAYRIQVNPVLLANSGLTFADLRSAISQANINAPLGTLNGEQKS----- 226

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                              A    ++ +   ++                 + +    +  
Sbjct: 227 ---------------TVIHAQSQLQSVEDYENLIISFQNNSPLRLGQVAKVVRDAQNLYQ 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +            +   +    ++    +   LRA         V      +   S 
Sbjct: 272 SAWINNKQAILLNIQRQPSANVIDVVDEIYKVLPDLRASLPQTIDIQVVGDRTESIRLSI 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K    +   LV+IV F+ +      L+    + L++I T  ++  LG ++   ++  
Sbjct: 332 DNVKNELLLSIALVVIVTFIFLRSITATLIPSIVVPLSIIGTFIVMFFLGYSINNLTLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + +  G  VD  I++ E I     +  S   +   G      T+     + +   + L F
Sbjct: 392 LTIATGFVVDDAIVMIENIARHVEEGDSPLNAALKGSKEIGFTLISLTFSLIAVLIPLLF 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            G   G     FAIT+ ++ILIS+F ++++   M   ++  K 
Sbjct: 452 MGDILGRLFSEFAITLAVAILISLFISLTLTPMMCARLLNDKN 494



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 12/218 (5%)

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI- 666
           +Q+        + L  Q   S     V++ + K + ++           V    +  +  
Sbjct: 270 YQSAWINNKQAILLNIQRQPSANVIDVVDEIYKVLPDLRASLPQTIDIQVVGDRTESIRL 329

Query: 667 ----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
                K  + + I+ + ++ +I++R      L     + L I  T       G   N   
Sbjct: 330 SIDNVKNELLLSIALVVIVTFIFLR-SITATLIPSIVVPLSIIGTFIVMFFLGYSINNLT 388

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+    G+ V+D +V+ + +    +      S  +   K   E     +  + +    
Sbjct: 389 LMALTIATGFVVDDAIVMIENI---ARHVEEGDSPLNAALKGSKEIGFTLISLTFSLIAV 445

Query: 783 VLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
           ++P+   G   G +   FAI +A  I+++   S+ +  
Sbjct: 446 LIPLLFMGDILGRLFSEFAITLAVAILISLFISLTLTP 483



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 91/239 (38%), Gaps = 6/239 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++L  +Q+G  + +     +   V + +   +  A + ++  + K  + I   +++    
Sbjct: 788  TDLADIQMGKTTLEIQRVNQFPSVMISFNVNNGYALSDIIPQIMKIQSAIKMPASVYMNL 847

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                K      +  I  ++ +   M I + + ++ +   +  ++TL       L    L 
Sbjct: 848  QGSTKAYAYSQKNTIWLLLAAIFVMYIVLGVLYESFIHPITILSTLPSATIGALLALILV 907

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              E ++  +  ++ LIG    + ++V D      +++   +   + + K+          
Sbjct: 908  DRELDMVGIIGIILLIGIVKKNAIMVIDFALNEERVH--GLKPIEAVKKAALLRFRPIFM 965

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            T++AA  + +P+      G  +     + M  G++++   ++F    I L+        
Sbjct: 966  TTLAALFAAIPLMFSTGVGAELRTPLGLTMVGGLMLSQILTLFTTPVIYLYFDRLVKSK 1024


>gi|209963628|ref|YP_002296543.1| AcrB [Rhodospirillum centenum SW]
 gi|209957094|gb|ACI97730.1| AcrB [Rhodospirillum centenum SW]
          Length = 1027

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 66/516 (12%), Positives = 145/516 (28%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  IGL  A      +  + +FP     + +            V    
Sbjct: 9   RRPVVAIVVNLLILLIGLRAA-----QELPVQQFPQIESASVV---------VTTVYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    +   S +        S     + +T+    +        ++   L  
Sbjct: 55  PAEVVKGFITTPVERAVSSISGVDYVESSSVAGVSTVTVRLRLNHSSTVALAEIGNRLDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  + +   +                +          +  + R+   ++ +     
Sbjct: 115 IRNELPNEAEPPTVEVIRADRSYAAFY-VAVTATTLDLPRLTEYLDREVQPRLTVLPGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D +R+     +   +       N                +  Q 
Sbjct: 174 KVGLEGARPQAMRIWLDAARMDAFGISADDVQAALTRNNFLAAIGQSK------GNAVQV 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    ++                      +   E             I           
Sbjct: 228 DLLTDTDLKTEAEFEQ--------------LIVRESADSIIRLSDIARISLASEEPAADV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +              +RA   P     +          + + 
Sbjct: 274 RLDHVPAVYLSVWPLPGSNEITLGYDLRAELDRIRAALPPGVEIKMAYDGTIYMERALTE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +V +V+F+ +   +  LV   +I +++I    ++  LG +  L ++  IV
Sbjct: 334 IGKTLAETVLIVGLVVFLFLGSVRTALVPLVAIPVSLIGAAGMMLALGFSFNLLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +GL VD  I+V E +    R+ +S   +      + +  I    IT       + F  
Sbjct: 394 LSVGLVVDDAIVVVENVSRFMREGRSRTEAALASARQLFGPIVAMTITLAAVYAPIGFLS 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R FA T+ +++L+S   AI++   M    
Sbjct: 454 GLTGVLFREFAFTLAIAVLMSGVVAITLSPVMSARF 489



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 64/188 (34%), Gaps = 6/188 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +   + +    + P   I+        + R L   G        I  L+          
Sbjct: 299 DLRAELDRIRAALPPGVEIKMAYDGTIYMERALTEIGKTLAETVLIVGLVVFLFLGSVRT 358

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           AL  +  + + +    G     G  FNL  + A++  +G  V+D +VV + +    +   
Sbjct: 359 ALVPLVAIPVSLIGAAGMMLALGFSFNLLTLLAIVLSVGLVVDDAIVVVENV---SRFMR 415

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              S  +    S  +  G  V  ++       P+       G +   FA  +A  ++++ 
Sbjct: 416 EGRSRTEAALASARQLFGPIVAMTITLAAVYAPIGFLSGLTGVLFREFAFTLAIAVLMSG 475

Query: 810 SSSIFIAA 817
             +I ++ 
Sbjct: 476 VVAITLSP 483



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 84/251 (33%), Gaps = 9/251 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +   V +S +           ++             +        A + + +  ++
Sbjct: 762  IRTPSGAAVPVSSIARLETGAAPRALTRFQQADSFRVYGGVVPGVTKEQALSALEQAARE 821

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             +     L     +  +  + +  +   G   ++I  +    +   R      LG++  L
Sbjct: 822  ILPADYVLDHAGESRQIRQEGNTLIGTLGFALLLIYLVLAAQFGSFRDPLVVLLGSV-PL 880

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L       F +L     N+ +   ++TL+G    + ++V +       L     S  + 
Sbjct: 881  ALSSALVFPFLSLT--TVNIYSQVGLITLVGLIAKNGILVVEFAN---HLQEEGRSKLEA 935

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            + ++    L   + T+ A  +   P+ +    G +   S  I +  G+ + A  ++FI  
Sbjct: 936  VREAALTRLRPVLMTTAATVVGHFPLVLVEGPGAAARNSIGIVLVAGMAIGALFTLFILP 995

Query: 818  PILLFIYDWRA 828
             + + I   R 
Sbjct: 996  SVYMLIAADRR 1006


>gi|171317837|ref|ZP_02907016.1| acriflavin resistance protein [Burkholderia ambifaria MEX-5]
 gi|171097002|gb|EDT41870.1| acriflavin resistance protein [Burkholderia ambifaria MEX-5]
          Length = 1040

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 69/542 (12%), Positives = 151/542 (27%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAITSKTLPLTQVQDLTDTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKSGRPVMLTDVAKVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++        L+          V          +    
Sbjct: 275 VNAEPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVQVVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ + G +L   S+  + +
Sbjct: 335 QFELLLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  +   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGHTSLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+               +I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHSPPPESHRFEARVHRVIDAVIA 514

Query: 540 IQ 541
             
Sbjct: 515 RY 516



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    + G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGHTSLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAIVSLTLVP 483



 Score = 41.6 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGAGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDSLARR 1019


>gi|221639204|ref|YP_002525466.1| Acriflavin resistance protein [Rhodobacter sphaeroides KD131]
 gi|221159985|gb|ACM00965.1| Acriflavin resistance protein [Rhodobacter sphaeroides KD131]
          Length = 1088

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/603 (11%), Positives = 170/603 (28%), Gaps = 40/603 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  +G             + RFP+                  +     
Sbjct: 9   RNPVAPLLGFVLLMVLG-----WQAFNTLPITRFPNIDVPLV---------AVTVDQAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++   ++   + F      +         +  
Sbjct: 55  APAEMETQVTKEIEDAVAGVTGVKNITSTVVDGRSTTVVEFRMEVPTDKAVQDTKDAIDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L    +  ++     +  +I+    +   +     E S  +       +       
Sbjct: 115 IRGDLPGGIEAPIVTRIDVEGQAIMTFAVSSPNMTIE--ELSWFVDDTITRALQGKPGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E DP +L     T  +++      N +       +     +     
Sbjct: 173 RVDRYGGAEREIRVELDPVKLDSFGITAPQVNTQLRATNANLGSGRAELGQGEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++   +   +  F   +    V  S                        L   
Sbjct: 233 DAATAGRLAATTIALPSGRFVRLSDLGEVVDS---------------------YEELRSF 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A+ +   ++           A + P     + +  V    G+   
Sbjct: 272 SRFNGEPVVTFAVFRAKGASEVSVAETVNAVLADLARARPEVRAELVDDTVFYTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L  +V+   +   +   +A  ++ L+ + T  ++ LLG +L L S   I 
Sbjct: 332 ALHTLLEGALLATLVVLAFLRNWRATFIAAVALPLSAVPTFWVMDLLGFSLNLVSFLAIT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +  +++T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIRMGKSPYRAAIDAADEIGMAVIATSLTIVAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F +T+ +S+L S+  A  I   M  +++R K                   +
Sbjct: 452 GIPGQYFAQFGLTVAISVLFSLLVARLITPMMAAYLMRSKDADEKSHGDGFIMRGYLGLV 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +G   +F++    +L   G     +    I L V       L       
Sbjct: 512 RQTLRFRYLTLLGAIGVFAVSMFFMLRIPGSFIPPEDVSRIPLSVELAPGSSLDETDRTT 571

Query: 599 ESL 601
           +++
Sbjct: 572 QAI 574



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 79/256 (30%), Gaps = 6/256 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + + R V LS +   ++S +      +            + +    V+    +  V 
Sbjct: 244 TIALPSGRFVRLSDLGEVVDSYEELRSFSRFNGEPVVTFAVFRAKGASEVSVAETVNAVL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P    +  +                 +  + +A L+ +     W     A   
Sbjct: 304 ADLARARPEVRAELVDDTVFYTYGNYEAALHTLLEGALLATLVVLAFLRNWRATFIAAVA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L    T     L G   NL +  A+    G  V+D +V  + +    +      S   
Sbjct: 364 LPLSAVPTFWVMDLLGFSLNLVSFLAITLATGILVDDAIVEIENI---ARHIRMGKSPYR 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
               + +E     + TS+      +P++   G        F + +A  ++ +   +  I 
Sbjct: 421 AAIDAADEIGMAVIATSLTIVAVFVPVSFMPGIPGQYFAQFGLTVAISVLFSLLVARLIT 480

Query: 817 APILLFIYDWRAKNAR 832
             +  ++   +  + +
Sbjct: 481 PMMAAYLMRSKDADEK 496



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 7/184 (3%)

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E    ++ +EL+      +I+  + +L + I +          + +L L I        
Sbjct: 856  QEAGDAEVQQELMTSFGNAMILGLMLVLTVLILLFRSVLQPFTILFSLPLAIGGVAAALI 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G   ++  +  +L L+G    + +++ D   +        +     I ++ ++     
Sbjct: 916  LTGSALSMPVLIGILMLMGIVTKNAILLVDFAVEMRA---RGMDRFSAILEAGHKRARPI 972

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            V TS+A    +LP A+    GG      A  +  GI+V+   S+ I     L + D    
Sbjct: 973  VMTSIAMSAGMLPSALGVGEGGPFRAPMATAVIGGIIVSTVLSLVIVPSFFLIMDDLSRL 1032

Query: 830  NARI 833
             AR+
Sbjct: 1033 FARL 1036


>gi|16331320|ref|NP_442048.1| preprotein translocase subunit SecD [Synechocystis sp. PCC 6803]
 gi|6647812|sp|Q55610|SECD_SYNY3 RecName: Full=Protein-export membrane protein secD
 gi|1001493|dbj|BAA10118.1| protein-export membrane protein; SecD [Synechocystis sp. PCC 6803]
          Length = 472

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 136/482 (28%), Positives = 217/482 (45%), Gaps = 60/482 (12%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
            + K  + LGLDLRGG+ L +EV          N  L      + + +   G+    ++ 
Sbjct: 21  VLVKLPLQLGLDLRGGAQLTIEVQPTKEIPQIDNDSLVAVKTVIENRVNALGVSEPLVQT 80

Query: 94  -IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             ++KI +              +    Q    +     +                     
Sbjct: 81  AGEDKIVVQLPGVTDPGQAERILGGTAQLEFQQQRPGTE--------------------G 120

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
           +    ++I++ ++   + + + G S     RL       +   +   +    +  T   +
Sbjct: 121 EFQAEYSIKRQLDAELENLRRSGASPENSDRLEELIKAKEESNKALLALFEPMGLTGKNL 180

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
           +  +  PN S   +   +RF  +       +   V  +G  L     N         V+ 
Sbjct: 181 TDARPSPNQSGTAWEVALRFDEEGGQKFAELTQAVAGTGRSLGVFLDNDLISAPVVGVEF 240

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                                               N  I  G A I+GNFTI+TA  LA
Sbjct: 241 -----------------------------------ANTGITGGAAVITGNFTIDTANDLA 265

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
             LR GSLP  + +VE R VGA LG +SI +   A   GLVL+++FM V Y   G+VAD 
Sbjct: 266 VQLRGGSLPFPVEVVENRTVGATLGQESIRRSLVAGFVGLVLVLVFMAVYYRLPGIVADI 325

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           S+ +  +LTLA  +L+G TLTLP IAG +L IG+AVD+N+L+ ER REE R   +++ S+
Sbjct: 326 SLMIYAVLTLAAFALVGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAGNTLYRSV 385

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           + GF RA+S+I DSN+T LIA   LF+FG G V+GFA+T+ + +++S+FTA++  R +++
Sbjct: 386 EAGFFRAFSSILDSNVTTLIACAALFWFGSGLVKGFALTLAIGVMVSLFTALTCSRTLLL 445

Query: 513 FI 514
            I
Sbjct: 446 VI 447



 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 38/226 (16%), Positives = 96/226 (42%), Gaps = 4/226 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L++  I                      G+    T     V+ +   +     +     V
Sbjct: 226 LDNDLISAPVVGVEFANTGITGGAAVITGNFTIDTANDLAVQLRGGSLPFPVEVVENRTV 285

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + +E IR+ +V   +  + +L+++ + ++    + A  +L++    TL  FAL G+ 
Sbjct: 286 GATLGQESIRRSLVAGFVGLVLVLVFMAVYYRLP-GIVADISLMIYAVLTLAAFALVGVT 344

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      +    ++          + +++
Sbjct: 345 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GNTLYRSVEAGFFRAFSSILDSNV 401

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              I+   +  +G  ++  FA+ +A G++V+  +++  +  +LL I
Sbjct: 402 TTLIACAALFWFGSGLVKGFALTLAIGVMVSLFTALTCSRTLLLVI 447


>gi|332702486|ref|ZP_08422574.1| acriflavin resistance protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332552635|gb|EGJ49679.1| acriflavin resistance protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 1025

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 63/536 (11%), Positives = 152/536 (28%), Gaps = 38/536 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++   +    G+         Q  +   P                  ++V    E
Sbjct: 9   RPVLTIVGVLVTAIFGIY-----GYYQMPVREDPDVEFPIV---------SVNVVFPGAE 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +E  + ++       + R+    IT  F   R  +  A  V   +   
Sbjct: 55  PEVVETEIIEPLEEEINTVEGLKTLTSTAREEVATITAEFELWRDIDVAAQDVRDRVSRA 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    ++ ++        +++      D      +  S         ++       +
Sbjct: 115 RRELPDGIEEPIIEKLDPDAQAVLWIALTGDTRWDE-VRLSTYADEVLRQRLENLRGVGR 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            +        +  E DP +L     T   +       N                   +  
Sbjct: 174 IIIGGERRYAVRIELDPLKLAAHRLTAQDVVEAVQANNVDIPSGRVESVAREFLVKTRG- 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                   +P  ++                     +        
Sbjct: 233 -------------------QFSEAEPFNELIVASRDGGPVRVRDVGQAVDGVENDRQIAR 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +     E        L           +          S    
Sbjct: 274 FVGETAVGMGVVKLSGANTVSLAEGVKARMEELARDFPAGLDYQIASDESVFIEESIRDL 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T  + +GLV++V+ + +   +  L+   +I  +++  LA++++LG ++   ++ G++L
Sbjct: 334 LFTIGLTSGLVVLVVLLFLRTFRGTLIVGLAIPASLLGGLAVMNVLGFSVNTLTMLGLIL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFFG 481
            IG+ +D  I+V E       +      +  +G +  A+ +I ++   A +   V F  G
Sbjct: 394 AIGIVIDDAIVVLESSYRHLEQGADPVPAARVGTTEVAFPSIANTLSLAAVFIPVAFTPG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
             G     F +T+  +++ S  TA+++   +   ++     +    + L R F I 
Sbjct: 454 LIGRFFYEFGLTVAATVIASTLTALTLTPMLCSRLLHRNHKRGRVFHALERGFEIF 509



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 8/212 (3%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             +       VA    L  ++  + E +P                      I  ++ S I 
Sbjct: 805  TVSASTPPDVALGDPLAALQDWLDENLPEDFSFEFTGQTRDFQESFYYLSIT-IVFSVIF 863

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + +  +F+ +   L  +T L L      G   L  +   + A   ++ L G +  + +
Sbjct: 864  IYLVLAAQFESFVNPLIILTALPLAGVGAAGALWLLDMPLGIYAFIGLIMLAGMATKNAI 923

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ D       L     S R     + +      + T+M+  + +LP+A+    GG    
Sbjct: 924  LMLD---YAGVLQARGESARKAAVDAAHVRFRPVIMTTMSTVLGMLPIALGFGAGGEARA 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               + +A G++V    ++ +   +     D R
Sbjct: 981  PMGVAVASGLLVTTFLTLIVLPVVYTLTADLR 1012



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 84/254 (33%), Gaps = 7/254 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               PV +  V   ++ ++      +        +  ++    ++V+    ++   +++ 
Sbjct: 248 RDGGPVRVRDVGQAVDGVENDRQIARFVGETAVGMGVVKLSGANTVSLAEGVKARMEELA 307

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIYIWIRFKWYFALGAITTLIL 702
              P                E IR  +  + + S + +L+ +     +   L     +  
Sbjct: 308 RDFPAGLDYQIASDESVFIEESIRDLLFTIGLTSGLVVLVVLLFLRTFRGTLIVGLAIPA 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   L    + G   N   +  ++  IG  ++D +VV +    + +             
Sbjct: 368 SLLGGLAVMNVLGFSVNTLTMLGLILAIGIVIDDAIVVLES---SYRHLEQGADPVPAAR 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
               E    S+  +++     +P+A   G +      F + +A  ++ +  +++ +   +
Sbjct: 425 VGTTEVAFPSIANTLSLAAVFIPVAFTPGLIGRFFYEFGLTVAATVIASTLTALTLTPML 484

Query: 820 LLFIYDWRAKNARI 833
              +     K  R+
Sbjct: 485 CSRLLHRNHKRGRV 498


>gi|330966626|gb|EGH66886.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 367

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 33/388 (8%), Positives = 87/388 (22%), Gaps = 29/388 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P               +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------AIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVRTAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S   
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESIKG 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
              T      LV +V+++ +   +  ++
Sbjct: 340 VVHTLIEAIVLVFLVMYLFLQNFRATVI 367


>gi|269102066|ref|ZP_06154763.1| RND multidrug efflux transporter [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161964|gb|EEZ40460.1| RND multidrug efflux transporter [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 1040

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 58/626 (9%), Positives = 167/626 (26%), Gaps = 35/626 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +   P                      E      +   +    ++  S +     
Sbjct: 29  FSKLAVREMPDIESPVVT---------VMTTYEGTSATVMESQVTTPIEDELSGISGIDN 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                R   ++IT+ F            V   +     +L  D    ++          +
Sbjct: 80  ITSITRNGMSRITIEFDMDWDLTEGVSDVRDAVARAQRRLPDDANDPIVSKDNGSGEPAL 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               +  +      + +    R   D+  +         S  +   +  +  P  +    
Sbjct: 140 YINLSSSE--MDRTQLTDYAQRVLEDRFSLINGVSSVSLSGGLYKVMYVKLKPELMAGRG 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            TT  +                          N  L   +V      ++  TA       
Sbjct: 198 VTTQDIVNALKDE-------------------NVELPGGEVRNDQTVMSVRTARLYRNAD 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +          +     ++                V         +  +     +
Sbjct: 239 DFKYLVVRTAADGTPVYLKDIADVAVGAENENSTFKSNGVVNLSLGIVTMSDANPLNVAK 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
              +    ++          ++         S      T  +   LV++VL++ +   + 
Sbjct: 299 DVRMEVERMQKFLPQGTQLTLDYDATVFIERSIGEVYSTLFVTGALVVLVLYIFIGQARA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ ++++         G ++ L ++  ++L IGL VD  I+V E I    ++ +
Sbjct: 359 TLIPAITVPVSLVSAFIAAYFFGFSINLLTLMALILAIGLVVDDAIVVVENIFHHLQRGE 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTA 503
           S   +   G       +  +    ++  + + F  G        F++ + +S++ S   A
Sbjct: 419 SPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGRLFTEFSVLLAMSVIFSSLIA 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFF--LIPDCIAIQFMRARFWGVGISILFSICSI 561
           +++   M   +++     +     ++R F  L     AI  +  +   +   ++ +    
Sbjct: 479 LTLTPVMGAKLLKANVKPTRFNQWINRQFDKLERGYRAIVTVAVKKRFMAPIVVIACVLA 538

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
            +     +   +  +    +     +  + +     + ++   +       G+       
Sbjct: 539 SVGLMKVIPAQLAPQEDRGVLFAFVKGAEGTSYNRMIGNMDEVERRLLPMLGQGVLKSVS 598

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVP 647
              P            V  ++ +   
Sbjct: 599 IQSPAFGGRAGDQTGFVIMQLEDWND 624



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 84/260 (32%), Gaps = 12/260 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V          ++   +     +     F       + L            V + V+ 
Sbjct: 243 LVVRTAADGTPVYLKDIADVAVGAENENSTFKSNGVVNLSLGIVTMSDANPLNVAKDVRM 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK-----GIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++  +           +    +  + R        + V  + + +++YI+I  +    L 
Sbjct: 303 EVERMQKFLPQGTQLTLDYDATVFIERSIGEVYSTLFVTGALVVLVLYIFI-GQARATLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +         FG   NL  + A++  IG  V+D +VV + +           
Sbjct: 362 PAITVPVSLVSAFIAAYFFGFSINLLTLMALILAIGLVVDDAIVVVENI---FHHLQRGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSS 812
           S      K   E     V T+    +  LP++   G V      F++ +A  ++ ++  +
Sbjct: 419 SPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGRLFTEFSVLLAMSVIFSSLIA 478

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +   +     K  R
Sbjct: 479 LTLTPVMGAKLLKANVKPTR 498



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + I   L    + G   N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFVNPLVVMLTVPMGIFGGLAGLWIMGQGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L      F   I  +    L   + T+       LP+ +    G     +    + FG+
Sbjct: 931  QLRDKGTEFEQAIIDASVRRLRPILMTAFTTLFGALPLILSTGAGSESRIAVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A   ++ +   +   +        
Sbjct: 991  AFATLVTLLVIPAMYRLLSAKTKSPG 1016


>gi|157144975|ref|YP_001452294.1| multidrug efflux system subunit MdtC [Citrobacter koseri ATCC
           BAA-895]
 gi|166233225|sp|A8AEE5|MDTC_CITK8 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|157082180|gb|ABV11858.1| hypothetical protein CKO_00705 [Citrobacter koseri ATCC BAA-895]
          Length = 1028

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 166/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISIAITLCGVL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTWSQGELYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K       +  R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRSAISNANVRKPQGAIDDKTHRWQVQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTATE--------------------YQPLIIHYNNGAAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIREKLPELQTLIPASIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENISRHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K +                  
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKSSKPREQTRSRGFGRLLTGLQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +   E + + +T++   ST++ +     ++ +E +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSEATEAINRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRNGN--LTPEQAIFQACLLRFRPIMMTTLAALFGALPLVISGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 73/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         + E + +  T I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIREKLPELQTLIPASIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---SRHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKSSKPR 496


>gi|291616033|ref|YP_003518775.1| MdtB [Pantoea ananatis LMG 20103]
 gi|291151063|gb|ADD75647.1| MdtB [Pantoea ananatis LMG 20103]
 gi|327396285|dbj|BAK13707.1| multidrug resistance protein MdtB [Pantoea ananatis AJ13355]
          Length = 1067

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 61/537 (11%), Positives = 147/537 (27%), Gaps = 38/537 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L + +   GL               +P+                   +     
Sbjct: 10  RPVATILLMAGVLIAGLFAYRFLSTSALPQVDYPTIQ--------------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL+F+     +    +V   +   
Sbjct: 56  PDVMASTITSPLERQLGQMSGLSQMSSTSSGGSSIITLTFSLDLSLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N+ L  D              S V++            +    +  +   ++        
Sbjct: 116 NNLLPTDLPTPPTYKKVNPADSAVITLAASSD-TLPLTQVQDLVNTRVALKLSQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     T   ++      N       F  R+   +      
Sbjct: 175 VTLAGGHQPAIRVQMNPQALAAHGLTLEDVNTLIGNSNVKGSKGGFDGRYHSVTIDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E                      ++                +I +          
Sbjct: 235 LRTAAE--------------------YGNLILTYQNGAALRLKDIAHIEQGPENSFQSAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +++       L+A         +          S S  
Sbjct: 275 ANNHPAIVIGVQRQPGANVIQVVDSIKAQLPTLQAALPDGVKMTILSDRTQTIRASISDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +      L+   ++ L+++ T  ++ L G +L   S+  + +
Sbjct: 335 QFELMLSIALVVMVTFLFLRNVAATLIPSVAVPLSLVGTFGVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  +D  I+V E I       +    +   G  +   TI     + +   + L F G 
Sbjct: 395 ATGFVIDDAIVVVENISRRLEAGEPPLEAALKGSQQIGFTIISLTFSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   R FAIT+ +SIL+SM  ++++   +  +++ +   +           +   
Sbjct: 455 VVGRLFREFAITLAVSILVSMLVSLTLTPMLCAYLLHFVPPEKQSRFARKGGEVFDW 511



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 86/229 (37%), Gaps = 12/229 (5%)

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             + SFQ+     +  + +  Q        +V++ +K ++  +           +    +
Sbjct: 265 GPENSFQSAWANNHPAIVIGVQRQPGANVIQVVDSIKAQLPTLQAALPDGVKMTILSDRT 324

Query: 663 RELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           + +          + + I+ + M+ ++++R      L     + L +  T G   L G  
Sbjct: 325 QTIRASISDVQFELMLSIALVVMVTFLFLR-NVAATLIPSVAVPLSLVGTFGVMYLAGFS 383

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            N  ++ A+    G+ ++D +VV + +    +         +   K   +     +  + 
Sbjct: 384 LNNLSLMALTIATGFVIDDAIVVVENI---SRRLEAGEPPLEAALKGSQQIGFTIISLTF 440

Query: 778 AAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +    ++P+   G   G +   FAI +A  I+V+   S+ +   +  ++
Sbjct: 441 SLIAVLIPLLFMGDVVGRLFREFAITLAVSILVSMLVSLTLTPMLCAYL 489



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +   D  +       + K   ++   S I           +      +  +
Sbjct: 834  NQFPAVMISFNLNDGYSLEDAQNAITKVTAQLQLPSAITLRYQGETSAFQSATGNTLWLI 893

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + M + + I ++ +   +  ++TL       L    L    F+L A+  V+ LIG 
Sbjct: 894  LAALLTMYVVLGILYESFIHPVTILSTLPSAAVGALLTLLLANTAFSLIALIGVILLIGI 953

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   +        +S R+ I ++        + T+MAA +  LP+ +    
Sbjct: 954  VKKNAIMMIDFALE--AENKQHLSPREAIHQACLLRFRPILMTTMAALLGALPLMLASGS 1011

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G  +     + +  G++V+   ++F    I L+      +
Sbjct: 1012 GAELRQPLGLVIVGGLIVSQVLTLFSTPVIYLWFDGIAQR 1051


>gi|313802046|gb|EFS43280.1| protein-export membrane protein SecD [Propionibacterium acnes
           HL110PA2]
          Length = 552

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 118/540 (21%), Positives = 208/540 (38%), Gaps = 55/540 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +LVI+  M   +G++                +  P     LGLDLRGG+ + L    +D
Sbjct: 2   IFLVIIIVMYVLMGVM---------------RTWSP----KLGLDLRGGTSVTLTAKTED 42

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTL 117
                   L+     +   +   G+G  S++ + ++ I +S  +       E +     L
Sbjct: 43  GKAPSATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQL 102

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME--IIRQRIDQIG 175
             + V ++  V  K            S + +        +     +           Q  
Sbjct: 103 GFRMVYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDASASSKGGTTSSASQYN 162

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +               P  +D                       S            D
Sbjct: 163 EKDPQSAAKMVKAAEEWKPTPEDQKAFEDY------------KCAKSVDTPGDKPLVTCD 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +     +   V I+G  +  A +         VV++ F+ +G   F + T     K   
Sbjct: 211 RERTMKYLLSPVAITGTQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSP 270

Query: 296 VVLDGRVLTAPVINQAIPSGK-----------AQISGNFTIETAGILAAMLRAGSLPIKL 344
                 VL   VI+    +G            AQISG+FT  +A  LA +L+ G+LP+  
Sbjct: 271 QNQFAVVLDGKVISSPQLNGNTGTSCPINGGEAQISGHFTQNSAADLANVLKYGALPLSF 330

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
           +I    N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A 
Sbjct: 331 DISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAA 390

Query: 405 LSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           + LL    G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A 
Sbjct: 391 MVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKAR 450

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            TI  ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 451 GTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFW 510



 Score = 94.8 bits (233), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 329 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 387

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 388 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIRE---GRTLRTALQT 444

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 445 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 504

Query: 824 YDWR 827
              R
Sbjct: 505 GRTR 508


>gi|150007000|ref|YP_001301743.1| putative cation efflux transporter [Parabacteroides distasonis ATCC
           8503]
 gi|149935424|gb|ABR42121.1| putative cation efflux transporter [Parabacteroides distasonis ATCC
           8503]
          Length = 613

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 68/613 (11%), Positives = 175/613 (28%), Gaps = 49/613 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +++  I   GL       L +  +D  P       +                 
Sbjct: 9   RKPVSTALVFVAIVIFGLFS-----LSRLSVDLLPEIETNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + +          R+  + +TL F      +   + V   L  
Sbjct: 55  SASDIEMNVSKPLENVLNSVSDLKHITSQSRENISIVTLEFNYGIDIDVATNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D +  ++      +I I++     ++  +   +       +  + +       
Sbjct: 115 VESSLPDDVENPIIFKFGTDDIPILILSVTAEESTNALYKILD---DKVSNPLARISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S   + +L    DP +L     T   +S      N +  G    +           
Sbjct: 172 AVSISGTPIRELQVYCDPYKLEAYGQTIEGISTIIAQENRNTPGGSVDI----------- 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G +        +    K ++D+       +  +      +   +       
Sbjct: 221 ---------GSNTYSLRVQGEFTDAKQMLDLVIGSQNGKNVYLRDVARVEDSIEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        ++A         V        L +   
Sbjct: 272 FNNGTKGGMIVIQKQSGANSVNIAKKVHQELPEIQASLPSDVKLDVIMDTSTNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  I   +V++V+F+ +   +   +   +I +++I + A L   G TL + S++ + 
Sbjct: 332 LKETIMITFIIVMLVVFVFLGRWRATFIIILTIPISLIASFAYLLASGNTLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG+ VD  I+V E +     +      +     +    ++  S +T L   + L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSQPKQAAVHATNEVAISVIASTLTMLAVFLPLTMVT 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPLS 529
              G   +     + + +++S   A+++   +   +         +       I+    +
Sbjct: 452 GMAGILFKQLGWIVSIIMIVSTVGALTLTPMLCSQLLRQQPEKGKLYRMFFTPIEKGLNA 511

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +       +   VG +++F    + +       +       I + +      
Sbjct: 512 LDRSYGRFLNWAVRHRKTVIVGATLIFIGSMMLIPVIKTEFFPTQDNARIGITIELPIGT 571

Query: 590 DLSVVRSNLESLQ 602
              + R     + 
Sbjct: 572 RQDITRELALDID 584



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 99/281 (35%), Gaps = 7/281 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +   L   G          + +G    + V L  V    +S++       N   +  
Sbjct: 220 IGSNTYSLRVQGEFTDAKQMLDLVIGSQNGKNVYLRDVARVEDSIEERAQETFNNGTKGG 279

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +V  +    +SV   + +     +I   +P     +  +         I      ++I+
Sbjct: 280 MIVIQKQSGANSVNIAKKVHQELPEIQASLPSDVKLDVIMDTSTNILNTIDSLKETIMIT 339

Query: 677 AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I +++ +++   +W      I T+ + +  +  +    G   N+ +++++   IG  V+
Sbjct: 340 FIIVMLVVFVFLGRWRATFIIILTIPISLIASFAYLLASGNTLNIISLSSLSIAIGMVVD 399

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI 794
           D +VV + +             +     + NE     + +++      LP+  V G + I
Sbjct: 400 DAIVVLENV---TTHIERGSQPKQAAVHATNEVAISVIASTLTMLAVFLPLTMVTGMAGI 456

Query: 795 --GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                   ++  ++V+   ++ +   +   +   + +  ++
Sbjct: 457 LFKQLGWIVSIIMIVSTVGALTLTPMLCSQLLRQQPEKGKL 497


>gi|110806046|ref|YP_689566.1| multidrug efflux system subunit MdtC [Shigella flexneri 5 str.
           8401]
 gi|123342714|sp|Q0T354|MDTC_SHIF8 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|110615594|gb|ABF04261.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 1021

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 70/603 (11%), Positives = 158/603 (26%), Gaps = 40/603 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +     P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLTPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD---SNITALIATVVLFF 479
             G  VD  I+V E I            +   G      T+     S +   +  +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVPVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K +           L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG--VLANRPVDLSVVRSN 597
                         +   +     L           +    L   + A++ +    +R  
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGK 574

Query: 598 LES 600
           L+ 
Sbjct: 575 LQD 577



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 799  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 858

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 859  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 918

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 919  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 976

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 977  PLEITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1013



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 74/217 (34%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA---AFISVLPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++    F+ +L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVPVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|126462206|ref|YP_001043320.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103870|gb|ABN76548.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 1088

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/615 (11%), Positives = 172/615 (27%), Gaps = 40/615 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  +G             + RFP+                  +     
Sbjct: 9   RNPVAPLLGFVLLMVLG-----WQAFNTLPITRFPNIDVPLV---------AVTVDQAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++   ++   + F      E         +  
Sbjct: 55  APAEMETQVTKEIEDAVAGVTGVKNITSTVVDGRSTTVVEFRMEVPTEKAVQDTKDAIDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L    +  ++     +  +I+    +   +     E S  +       +       
Sbjct: 115 IRGDLPGGIEAPIVTRIDVEGQAIMTFAVSSPNMTIE--ELSWFVDDTITRALQGKPGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E DP +L     T  +++      N +       +     +     
Sbjct: 173 RVDRYGGAEREIRVELDPVKLDSFGITAPQVNTQLRATNANLGSGRAELGQGEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++   +   +  F   +    V  S                        L   
Sbjct: 233 DAATAGRLAATTIALPSGRFVRLSDLGEVVDS---------------------YEELRSF 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A+ +   ++           A + P     + +  V    G+   
Sbjct: 272 SRFNGEPVVTFAVFRAKGASEVSVAETVNAVLADLARAHPEVRAELVDDTVFYTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L  +V+   +   +   +A  ++ L+ + T  ++ LLG +L L S   I 
Sbjct: 332 ALHTLLEGALLATLVVLAFLRNWRATFIAAVALPLSAVPTFWVMDLLGFSLNLVSFLAIT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +  +++T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIRMGKSPYRAAIDAADEIGMAVIATSLTIVAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F +T+ +S+L S+  A  I   M  +++R K                   +
Sbjct: 452 GIPGQYFAQFGLTVAISVLFSLLVARLITPMMAAYLMRSKDADEKSHGDGFIMRGYLGLV 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +G   +F++    +L   G     +    I L V       L       
Sbjct: 512 RQTLRFRYLTLLGAIGVFAVSMFFMLRIPGSFIPPEDVSRIPLSVELAPGSSLDETDRTT 571

Query: 599 ESLQIGDISFQNFDG 613
           +++       +  + 
Sbjct: 572 QAILDRIRDVKGVEN 586



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 79/256 (30%), Gaps = 6/256 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + + R V LS +   ++S +      +            + +    V+    +  V 
Sbjct: 244 TIALPSGRFVRLSDLGEVVDSYEELRSFSRFNGEPVVTFAVFRAKGASEVSVAETVNAVL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P    +  +                 +  + +A L+ +     W     A   
Sbjct: 304 ADLARAHPEVRAELVDDTVFYTYGNYEAALHTLLEGALLATLVVLAFLRNWRATFIAAVA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L    T     L G   NL +  A+    G  V+D +V  + +    +      S   
Sbjct: 364 LPLSAVPTFWVMDLLGFSLNLVSFLAITLATGILVDDAIVEIENI---ARHIRMGKSPYR 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
               + +E     + TS+      +P++   G        F + +A  ++ +   +  I 
Sbjct: 421 AAIDAADEIGMAVIATSLTIVAVFVPVSFMPGIPGQYFAQFGLTVAISVLFSLLVARLIT 480

Query: 817 APILLFIYDWRAKNAR 832
             +  ++   +  + +
Sbjct: 481 PMMAAYLMRSKDADEK 496



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 7/184 (3%)

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E    ++ +EL+      +I+  + +L + I +          + +L L I        
Sbjct: 856  QEAGDAEVQQELMTSFGNAMILGLMLVLTVLILLFRSVLQPFTILFSLPLAIGGVAAALI 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G   ++  +  +L L+G    + +++ D   +        +     I ++ ++     
Sbjct: 916  LTGSALSMPVLIGILMLMGIVTKNAILLVDFAVEMRA---RGMDRFSAILEAGHKRARPI 972

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            V TS+A    +LP A+    GG      A  +  GI+V+   S+ I     L + D    
Sbjct: 973  VMTSIAMSAGMLPSALGVGEGGPFRAPMATAVIGGIIVSTVLSLVIVPSFFLIMDDLSRL 1032

Query: 830  NARI 833
             AR+
Sbjct: 1033 FARL 1036


>gi|298384616|ref|ZP_06994176.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           1_1_14]
 gi|298262895|gb|EFI05759.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides sp.
           1_1_14]
          Length = 1034

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/637 (10%), Positives = 169/637 (26%), Gaps = 43/637 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D I       +          +    +P +
Sbjct: 135 PSQLMTLCLTSTDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAEPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSTVGQFEDIVVRANANGSIIRLKDVARVSLEASSYNTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        +           +          S      T      LV++V+++ +
Sbjct: 301 MEVAENVKKAMEEISENFPEGLSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  L+   ++ +++I T   + + G ++ + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSINILTLLGLILAIGIVVDDAIVVVEGVEHI 420

Query: 442 NRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSIL 497
               + S + +     +   S +  +++      V + F     G   R F +T+ +S+L
Sbjct: 421 METEKLSPYEATKKAMNGLSSALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ-------FMRARFWGV 550
           IS   A+++   M   I++    K  +I        +                  R    
Sbjct: 481 ISTVVALTLSPVMCSLILKPDSGKKKNIVFRKINEWLGIGSNKYVAAVTRTIKHPRRVLS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              ++     +           ++ +G  ++ +       L   R   E           
Sbjct: 541 AFGMVLIAILLIHRIIPTSFLPVEDQGYFKIELELPEGATLERTRVVTERAIAYLEKNPY 600

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            +  +N          +       + +   +  +   
Sbjct: 601 IEYVQNVTGSSPRVGSNQGRAELTVILKPWEERKSTS 637



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPVVAVPISLIGTFGFMLIFGFSINILTLLGLILAIGIVVDDAIVVVEGV--EH 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
            + T  +S  +   K++N      + TS+      +P+  + G  G +   F + +   +
Sbjct: 420 IMETEKLSPYEATKKAMNGLSSALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSV 479

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   ++   +P++  +
Sbjct: 480 LISTVVAL-TLSPVMCSL 496



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVWVCGLENDVYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDKGEDLIQSAIYAAKLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    I +     + +Y  ++K  +
Sbjct: 1005 IFAIVFGIILVPFFFVMVYKTKSKILK 1031


>gi|330981344|gb|EGH79447.1| acriflavin resistance protein [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 1035

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/588 (11%), Positives = 165/588 (28%), Gaps = 44/588 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+L   I  +G +           +   P+      +             L    
Sbjct: 10  RPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +  Q   +I L F   R     A +V   +   
Sbjct: 56  PEVMASTVATPLERSLGSIAGINTMTSNSSQGTTRIILQFDLDRDINGAAREVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    +            + ++   ++   +    +            +       +
Sbjct: 116 RNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P  L Q   +   +       N  +                   
Sbjct: 175 VQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAITSTNVRRPKGFVEDDQHNWQVQANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E   +                       +                 +   +    +   
Sbjct: 235 LETAED--------------------YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    + + +A  +   T+         LRA         +          +    
Sbjct: 275 YNNDRAVLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHEA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++L
Sbjct: 335 EMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALIL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             GL VD  I+V E I            +  +G      T+   N++ +   + + F GG
Sbjct: 395 ATGLVVDDAIVVLENISRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGG 454

Query: 483 ---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRFFL 533
                 R F+IT+ ++I++S+  ++++   +    ++ ++       +        R   
Sbjct: 455 LVESLFREFSITLSVAIIVSLIVSLTLTPMLCARWLKPREAHGENAFQRWSERVNDRMVA 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             D      MR R   +   ++  + +I L       +      G  +
Sbjct: 515 GYDRSLGWVMRHRRLTLLSLLVTVVVNIALYVVVPKTFLPQQDTGQLM 562



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVAI 471

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           +V+   S+ +   +       R  + 
Sbjct: 472 IVSLIVSLTLTPMLCARWLKPREAHG 497



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 98/262 (37%), Gaps = 9/262 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  QDPVTLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   S I +             +     ++ + +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLEREQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++ ++ I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    + L++   R +  +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHRYNK 1021


>gi|288817354|ref|YP_003431701.1| cation/multidrug efflux pump [Hydrogenobacter thermophilus TK-6]
 gi|288786753|dbj|BAI68500.1| cation/multidrug efflux pump [Hydrogenobacter thermophilus TK-6]
 gi|308750961|gb|ADO44444.1| acriflavin resistance protein [Hydrogenobacter thermophilus TK-6]
          Length = 1002

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/587 (11%), Positives = 151/587 (25%), Gaps = 43/587 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++       +GL         +  +DR P+                 +       
Sbjct: 8   RPVTTIMFMLSFVLLGLYT-----YTKMPVDRLPNVDFPIVT---------VNTTYTGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V+  +  Y ++  S +      V       +++T+ F   +  +    +V   +Q  
Sbjct: 54  PDVVDTNVTRYIEDEVSTISGIDAIVSQSYAGLSRVTIVFTLDKNIDVGTQEVRDAVQRA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++ V     ++         I+    +   V       +    +    +         
Sbjct: 114 YRRMPVGVDPPVVRKVDTGSFPILAVHLHSKSVDYQT--LAYYADKVIKREFQKVNGVGD 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L     P RL     T   +       +          +           
Sbjct: 172 VGLGGFRDNVLWVRLYPERLYSYGITPVDVLSAVSKNHLEVPTGTIYGKDKEYIIRLYGK 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+D  E+   +L G                                 +            
Sbjct: 232 VKDPKELENTYLKGN------------------------LRLRDVGFVEFTEDEKRGIAR 267

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   ++  +     +      A L     P     +               
Sbjct: 268 FKGEQSVALIVYKQSGFNTVEVADAVKARMAELNRELPPGMRMDITFDASVFPKEGAHAA 327

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I + L  +V+F+ +   +  L+  F+I + ++  +  L   G +L   ++  + +
Sbjct: 328 VEEIIIGSLLTALVVFVFLGSLRLTLIPVFAIPVTLLSAIIFLYYTGNSLNTFTLLALAV 387

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G+ +D  I+V E I        +   + ++G       +  S  + +I  + + F   
Sbjct: 388 AVGIVIDDAIVVIESIYRRREMGLAPLEAAEVGTRIVVFALLASTTSLVIVFLPIIFLKG 447

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FA+T+ ++I +S   AIS        +I   +                  + 
Sbjct: 448 VIGSFFGSFALTLAVAIGVSYIVAISFTPMAGARLITQTQENVFMRAYEKFELFFDRVLR 507

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                     +       I  + L  T+   + +  +G   +     
Sbjct: 508 WSLDHKLVVLLFSIATVYIGFLFLKATNKEFFPLTDEGAFIVRFETP 554



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 67/164 (40%), Gaps = 7/164 (4%)

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + ++ + + + +   F+ +      + T+ L ++ T G   L G   ++ +   ++ LI
Sbjct: 842  ALTVALVGIYMVLASLFESYRHPFTVLLTVPLSLSGTFGLLYLTGTSLSVPSYFGIILLI 901

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---A 787
            G  V D V+  +R+   ++L       R  I ++  E L   + T++    ++LP+    
Sbjct: 902  GIVVRDAVLFIERI---IQLRKEGYQTRQAILQARRERLRPILMTTLTVVFALLPVSLGL 958

Query: 788  VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G  +    AI +  GI  A   S+ +   +       + K  
Sbjct: 959  TAGSELRKPLAIAVIGGIATALPLSLLVLPIVYELFDGLKLKRR 1002



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I S +  L+           L  +  + + +   + F    G   N   + A+   +G 
Sbjct: 332 IIGSLLTALVVFVFLGSLRLTLIPVFAIPVTLLSAIIFLYYTGNSLNTFTLLALAVAVGI 391

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++D +VV + +    +     ++  +  +      +   + ++ +  I  LP+    G 
Sbjct: 392 VIDDAIVVIESI---YRRREMGLAPLEAAEVGTRIVVFALLASTTSLVIVFLPIIFLKGV 448

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAA 817
           +     SFA+ +A  I V+   +I    
Sbjct: 449 IGSFFGSFALTLAVAIGVSYIVAISFTP 476


>gi|262172727|ref|ZP_06040405.1| RND multidrug efflux transporter [Vibrio mimicus MB-451]
 gi|261893803|gb|EEY39789.1| RND multidrug efflux transporter [Vibrio mimicus MB-451]
          Length = 1036

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/541 (12%), Positives = 162/541 (29%), Gaps = 39/541 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLVQGFITQPLEQAVAQADNIDYMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      + + S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSEDLASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  + + +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAALNMSASDVMSVLNANNYQSATGQAIGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+  + +     N         V ++      R         +           
Sbjct: 233 QVSTVEELENLVVKAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVV----------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 282 ---------AAINAAPSANPINIAKDVLDMLPELQKNMPSNIKMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA+T+  S+ +S   A+++   M   +++  +  +     +          
Sbjct: 453 GITGALFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKANETPNKFELKVHHLLDRMTAR 512

Query: 539 A 539
            
Sbjct: 513 Y 513



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 78/791 (9%), Positives = 210/791 (26%), Gaps = 36/791 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                     +EL + +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 229  SADTQVSTVEELENLV--VKAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 286

Query: 126  LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                   N+     +    +   + S   ++ +    +  +    E+I+  ++   I   
Sbjct: 287  APSANPINIAKDVLDMLPELQKNMPSNIKMNVLYDSTVAINESIHEVIKTIVEAALIVLV 346

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 347  VITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 404

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 D+    G     A      +   PV+ ++           +     G        
Sbjct: 405  VLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGALFKEFAL 464

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                +  V      +    +               L+   L  ++    ER + A +   
Sbjct: 465  TLAGSVFVSGIIALTLSPMMCSKMLKANETPNKFELKVHHLLDRMTARYERMLSAVMAHR 524

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
             +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 525  PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVVMLMGTGPSNANLDYLANTMDDVNQIL 584

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                 +            N+     +    S   +     +    T+        +    
Sbjct: 585  SDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQEEVTNRVGTLVKEIPGMAVTA-- 642

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             F        G  + +   I            A  I          +  +    F     
Sbjct: 643  -FQMPELPGAGSGLPIQFVITTPNSFESLFTIATDILTEVKSSPMFVYSDLDLNFDSATM 701

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
             I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 702  KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 761

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
            +       G +         + +   +  P  +   +  +  V    T +          
Sbjct: 762  NYYVRAADGKVIPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPSPGTAMGDAINWFENL 821

Query: 652  --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 822  ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L +   L   A      N+ +   ++TL+G      +++ +  ++        +S  D +
Sbjct: 882  LAVCGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
              +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 940  MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 999

Query: 819  ILLFIYDWRAK 829
            I  ++ +    
Sbjct: 1000 IYSYLAEKHKP 1010



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L  +     +             E            + +   + +  +  ++ + +
Sbjct: 251 NVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLDMLPELQKNM 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + I  ++ +A+ +L+ I +        L  I T+ L + 
Sbjct: 311 PSNIKMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  + G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   G++   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAIPVIAMTLTLGAVYAPIALMGGITGALFKEFALTLAGSVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +        +
Sbjct: 488 MLKANETPNK 497


>gi|182415611|ref|YP_001820677.1| acriflavin resistance protein [Opitutus terrae PB90-1]
 gi|177842825|gb|ACB77077.1| acriflavin resistance protein [Opitutus terrae PB90-1]
          Length = 1058

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/669 (10%), Positives = 181/669 (27%), Gaps = 38/669 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   G+            + ++P       ++           V    
Sbjct: 19  RRPVLAIVVNLVIVIAGV-----QAWRSLNVRQYPR-SENASVN--------VSTVYVGA 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    +   +             Q  + I      +         +T  +  
Sbjct: 65  SAELVRGFVTTPLERAIASADGIDYVQSKSLQGFSMINARLKLNYEPTKALADITAKVNQ 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  + +   +   +          +    ++S A E +  + R    ++G      
Sbjct: 125 VRNDLPPEAEVPSISVESADSQFASAYLSFASDMLSQA-EITDYLTRVVQPRLGAVAGVQ 183

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P ++  L  + A++                       + G+  
Sbjct: 184 RAEVLGARTFAMRIWLKPEKMAALNISPAQVRQ------------ALAANNYLAAVGSTK 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++      +   F     +   D +               ++           
Sbjct: 232 GSLVQVNLTANTDLHSVEEFKRLVVRQYNDTT--------VRLEDVADVVLGAEDYDTEV 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +    ++        ++          +          + S 
Sbjct: 284 RYSGQTAVFMGIFPLPNANTIDVVKRVRTELDAIKRDLPSGLEARIGYDASEYISNAISE 343

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  +V   +I +++I  + L+   G TL L ++  IV
Sbjct: 344 VTHTLLDTLLIVVVVIFLFLGSLRSAVVPVIAIPVSLIGGVFLMQTFGFTLNLLTLLAIV 403

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +    R+  S   +   G       +    +T       +   G
Sbjct: 404 LSVGLVVDDAIVVVENVERHLREGLSPRQAAMKGARELVGPVIAMTVTLAAVYAPIGLQG 463

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+  ++ IS   A+++   M   ++R    +                 
Sbjct: 464 GLTGALFREFALTLAGAVTISGIVALTLSPTMAAHMLRSAAEEERGFTGWVNHHFDRLRE 523

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           A      R       +      +  L      +        +   +    ++     +  
Sbjct: 524 AYGRALGRTLQARPFVYAIWFVVGALAFPMYMFSPKELAPTEDQSVIFGIINAPANATAD 583

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           +       + Q F       +  Q     S       +     + +       +    + 
Sbjct: 584 QKRIYARAAEQAFLSTPEVDLTFQIMLPPSAGAALGADGFSGMVLKPWHAPRERTVFEIL 643

Query: 659 PKISRELIR 667
           P++  +L +
Sbjct: 644 PEVQAKLSQ 652



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 93/254 (36%), Gaps = 13/254 (5%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR----VLEMVKKK 641
           +  V L  V   +   +  D   +       F+        +++   +     L+ +K+ 
Sbjct: 261 DTTVRLEDVADVVLGAEDYDTEVRYSGQTAVFMGIFPLPNANTIDVVKRVRTELDAIKRD 320

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +   +      +          E+    +  ++I  + + +++        A+  +  + 
Sbjct: 321 LPSGLEARIGYDASEYISNAISEVTHTLLDTLLIVVVVIFLFLG---SLRSAVVPVIAIP 377

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +   +     FG   NL  + A++  +G  V+D +VV + +    +     +S R   
Sbjct: 378 VSLIGGVFLMQTFGFTLNLLTLLAIVLSVGLVVDDAIVVVENV---ERHLREGLSPRQAA 434

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            K   E +G  +  ++       P+ + G   G++   FA+ +A  + ++   ++ ++  
Sbjct: 435 MKGARELVGPVIAMTVTLAAVYAPIGLQGGLTGALFREFALTLAGAVTISGIVALTLSPT 494

Query: 819 ILLFIYDWRAKNAR 832
           +   +    A+  R
Sbjct: 495 MAAHMLRSAAEEER 508



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 86/269 (31%), Gaps = 28/269 (10%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              + ++  R+ L  L                  +       S    R L+   K + E  
Sbjct: 779  EDIYITGPRNQLIPLNAVAHIEHQTVPRSLNRFQQLNAVTLSGQTNRTLDQALKVLEEAA 838

Query: 647  PLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
                     +     SR+L ++G   +   I++ + + + + ++F  +   L  +  L  
Sbjct: 839  RDILPPGYSVDYTGESRQLRQEGNKFLPAFILAIVLIFLALAVQFNSFRDPL--VILLGS 896

Query: 703  DITKTLGFFALF--------------GIEFNLTAVA--AVLTLIGYSVNDKVVVYDRMRK 746
                  G                   G    L   A   ++TL+G    + ++V +    
Sbjct: 897  VPLAMFGALVFTVLKMPNPNVPFWTNGWTTTLNIYAQVGLVTLVGLIAKNGILVVEFAN- 955

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
              KL     S  + + ++    L   + TS+A      P+ +    G +   S  + +  
Sbjct: 956  --KLQEQGRSKIEAVHEAAMTRLRPVLMTSVATVAGHFPLTLVTGAGAAARNSIGLVLVG 1013

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G+ +    ++F+   + + I       AR
Sbjct: 1014 GMTIGTIFTLFVLPSLYVLIAKEHRAVAR 1042


>gi|149915175|ref|ZP_01903703.1| Acriflavin resistance protein [Roseobacter sp. AzwK-3b]
 gi|149810896|gb|EDM70735.1| Acriflavin resistance protein [Roseobacter sp. AzwK-3b]
          Length = 1030

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/558 (12%), Positives = 163/558 (29%), Gaps = 39/558 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   ++   G+     + L    +   P                         
Sbjct: 9   RRPVLAAVASLLLIVFGV-----SALRDVPVRELPDVDNAVV---------SITTTYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +          RQ ++++T+ F   R  +  A+ V   +  
Sbjct: 55  APEVIDTDITETIEGAVASIAGIRTISSESRQGRSQVTIEFDPGRDIDIAANDVRDAVGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D  +  +         ++      D       E +  + R  +D++   +   
Sbjct: 115 ILDTLPEDADQPQVEKADADADPVMRLAVTSD--RMTTAEITDYMDRFIVDRLATLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D   L     T A +                          N  
Sbjct: 173 NVRVYGDRAFAVRIWLDRRALAARKLTIADVESALR--------------------RNNV 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +      S         N    + +   D+  D +            +   +A      
Sbjct: 213 ELPAGEVTSIDRQLSVRLNSRLASVEDFRDVVLDRVAGYPVRLRDVARVEPGVASDTTIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++Q +            A L          I+   +      S   
Sbjct: 273 RSDGRDAVGMAIQRQSQSNTLQISNAVRAEVARLTPTLPEGMEIIIGSDDALFVGASIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                +I   LV++V+ + +   +  L+   +I ++++    L+ + G ++   ++  ++
Sbjct: 333 VVVALSISLALVVLVILLFLRSIRATLIPAITIPVSLLGCFILIGMWGFSINTLTLLALL 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I+      ++   +   G  +    +  +++T +   V L F  
Sbjct: 393 LAIGLVVDDAIVVLENIQRRIENGETPLVASMKGARQVTFAVLATSVTLIAVFVPLSFMP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F   M  ++ IS F A++   A+   +++  K   +     +R ++     
Sbjct: 453 GQVGKLFVEFGWVMAGTVAISTFVALTACPALASKVLKAGKGAPVSDEYAARGWMQKGYS 512

Query: 539 AIQFMRARFWGVGISILF 556
           AI     R   V + + F
Sbjct: 513 AILSRALRMPLVVLVLAF 530



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 65/167 (38%), Gaps = 7/167 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +   +S + + + +  +F+ +   +  + T+   +   +   AL G+  N+ +   ++ L
Sbjct: 852  LVFALSILIVFLVLAAQFESFVHPVTIMLTVPAGVAGAIYAMALTGLSINVYSQIGIILL 911

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG    + +++ +      +L       R+ + ++    L   V T ++  +  LP+ + 
Sbjct: 912  IGLVAKNGILIVEFAN---QLRDEGKDVREAVLQASVLRLRPIVMTVVSTVLGALPLVLA 968

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               G     +    +  G++ A +  + +   +   +  +      +
Sbjct: 969  TGAGAESRNAIGTVIIAGLLFATAMMLLVTPVLYDLLARFTKPRGAV 1015



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 6/135 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    T+ + +        ++G   N   + A+L  IG  V+D +VV + +   
Sbjct: 353 RSIRATLIPAITIPVSLLGCFILIGMWGFSINTLTLLALLLAIGLVVDDAIVVLENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
            +      +      K   +     + TS+      +P++   G V      F   MA  
Sbjct: 410 QRRIENGETPLVASMKGARQVTFAVLATSVTLIAVFVPLSFMPGQVGKLFVEFGWVMAGT 469

Query: 805 IVVAASSSIFIAAPI 819
           + ++   ++     +
Sbjct: 470 VAISTFVALTACPAL 484



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 63/526 (11%), Positives = 138/526 (26%), Gaps = 42/526 (7%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
              + L  ++   G       F      +  P               G   L         
Sbjct: 519  LRMPLVVLVLAFGATAGSYLFYDGLPRELAPREDRGV---------GFVPLTAPQGSTLA 569

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-------NKITLSFADSRFKENIADKVTLF 118
                     +E+ + L++EGI                + +    A    +      V   
Sbjct: 570  YTDQAARQVEEILAPLREEGIVETVFTFTGWGNRAWRSFVVFRLAPWDERSVPVSDVVTR 629

Query: 119  LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
            L    +++ V     +         +    Q  I       +++  + +  R ++I    
Sbjct: 630  LIPQMAQVTVARGFPVTPAGLGLRGNSTPVQVVIGGPEFGDVKEWAQALLSRAEEIEGL- 688

Query: 179  STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                 +     L QL    D  R   L  +   ++        S++   F  R       
Sbjct: 689  -VNPEINFEENLPQLDVTIDRERADDLGISVETVANTLQTMLASREVTTFVSRGREYPVI 747

Query: 239  NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             Q   ED+                 +T   + +I            +         A   
Sbjct: 748  AQAEEEDR-----------------RTPSDINNIFVRSGDGETLVPLGALVTVTENAAAP 790

Query: 299  DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              R        Q   +          +      AA +      +              G 
Sbjct: 791  SLRRFDRLPSIQLSGALAPGADLGTVLTRIEEAAAEILPAEAALGYQGQSRTFKDTSAG- 849

Query: 359  DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                    A+   +V +VL          +    ++   V   +  ++L G ++ + S  
Sbjct: 850  ---VGLVFALSILIVFLVLAAQFESFVHPVTIMLTVPAGVAGAIYAMALTGLSINVYSQI 906

Query: 419  GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            GI+L IGL   + IL+ E   +   + + V  ++          I  + ++ ++  + L 
Sbjct: 907  GIILLIGLVAKNGILIVEFANQLRDEGKDVREAVLQASVLRLRPIVMTVVSTVLGALPLV 966

Query: 479  F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
                 G  +       +   +L +    + +   +   + R+ K +
Sbjct: 967  LATGAGAESRNAIGTVIIAGLLFATAMMLLVTPVLYDLLARFTKPR 1012


>gi|126664700|ref|ZP_01735684.1| Acriflavin resistance protein [Marinobacter sp. ELB17]
 gi|126631026|gb|EBA01640.1| Acriflavin resistance protein [Marinobacter sp. ELB17]
          Length = 1033

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/512 (11%), Positives = 148/512 (28%), Gaps = 39/512 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G+  A+        + ++P                         
Sbjct: 9   QRPVLATVVSLLIMLLGVRAAM-----DLEIRQYPQLETTTVT---------VSTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     +  +        + +  Q  + I      +        ++   +  
Sbjct: 55  SSDLIQGFITTPLQQAIAESSGIDYLISTSAQGSSTIEAHMNLNYDANAALAEIQSKVAS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +  ++ ++T    +++       +      + +  + R    Q+       
Sbjct: 115 QRNVLPTEAQDPVISSSTGDSTALMYIAFYS-EGALSVPQITDYLTRVVQPQLQAISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    +    DP RL  +  T  ++       N           F   +  +  
Sbjct: 174 KAQLLGR-TFAVRVWLDPERLAAVNMTPVEVVDRLRANNYQAAVGTTRGEFTEVALTSNT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D                     +    +   +    +        +           
Sbjct: 233 DIADP--------------------ENFKQLVVKQKDGTQIRLQDIARVELGAQSYDQLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +     +        +R+         +          S S 
Sbjct: 273 MYKGIPATFTAIELAPGANPLTVAKLVKDELPGIRSQVPSGLEVQLAYDGSQFIEESISE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +VLIV+F+ +   +  +V   ++ L+++    ++ L G +L L ++  +V
Sbjct: 333 VIKTLAEALVIVLIVVFLSLGSVRASIVPAIAVPLSLVGGAFVMLLFGFSLNLLTLLSMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I       +S + +   G       I     T +     + F G
Sbjct: 393 LAIGLVVDDAIIMVENIHRHIENGKSRYDAAIHGAREMAVPIIAMTTTLVAVYAPIGFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAM 510
              G     FA T+  ++++S   A+++   +
Sbjct: 453 GLVGSLFTEFAFTLAGTVVVSGIVALTLSPML 484



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 69/746 (9%), Positives = 205/746 (27%), Gaps = 43/746 (5%)

Query: 100  LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
            +  A       +A  V   L G+ S++    +  L    +         + +I +VI   
Sbjct: 284  IELAPGANPLTVAKLVKDELPGIRSQVPSGLEVQLAYDGS------QFIEESISEVIKTL 337

Query: 160  IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
             E  + ++      +G   ++I    +               L  + G    + F   L 
Sbjct: 338  AEALVIVLIVVFLSLGSVRASIVPAIAVP-------------LSLVGGAFVMLLFGFSLN 384

Query: 220  NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
              +    +  +  + D          +   +G     A  +   +   P++ ++   +  
Sbjct: 385  LLTLLSMVLAIGLVVDDAIIMVENIHRHIENGKSRYDAAIHGAREMAVPIIAMTTTLVAV 444

Query: 280  RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
                      +G            T  V      +    +SG                  
Sbjct: 445  YAPIGFMGGLVGSLFTEFAFTLAGTVVVSGIVALTLSPMLSGKVLKPHGDPGKFERLVER 504

Query: 340  LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
                +       + + + + S+       +   +  ++ M     +     D  I     
Sbjct: 505  TFQGIANGYSTALVSLMKTKSVVVFFALAILCSIYFMVTMSQS--ELAPTEDQGILFYQG 562

Query: 400  LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
            L     +L         +   +  +    +  +++             +  S +   ++ 
Sbjct: 563  LGPQTSTLDYLLENGIEVQERLSKVDGYYEDFMVLGFTAPNAVFGGLKMKPSAERDITQF 622

Query: 460  YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
                  +   + +  +    F   ++ G    +    +++   +   + ++   +I    
Sbjct: 623  EVQPKMTAELSKVTGLQTAVFARPSLPGSGGGLPFQFVVTTGGSYEQLSSVADELIGAAM 682

Query: 520  MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                 +              I   R R   +G+S+      +  +   G       +G  
Sbjct: 683  QSGNFMFLRKSISFDKPVTRIDVDRDRVADLGLSMRDVGQQLSSMLGGGYVNRFSMEGRS 742

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
               +        +  ++  +     D              R       +    +    ++
Sbjct: 743  YQVIPQVDQNFRTDEQALKDYYIRADNGALVPLSSVVSFSRDVEPSNRTQFNQQNSLTLE 802

Query: 640  KKITE---------------IVPLSTIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIY 683
              ++                          +  G    +      ++     S + + + 
Sbjct: 803  GVVSPGVVSGTAMDFMEQASADIFPQSFGFDYKGETRQQAKQGSALMVTFFLSLLVIYLV 862

Query: 684  IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +  +F+ W   L  + ++ + +   + F  L     N+     ++TLIG    + +++ +
Sbjct: 863  LAAQFESWRDPLIILISVPMSVAGAMAFIVLGFATMNIYTQVGLITLIGVVSKNGILIVE 922

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
                N       ++  D + ++ +  L   + TS+A   +++P+ +    G     S  I
Sbjct: 923  --FANQLQKNKGLNKLDAVVEAASIRLRPIIMTSLALIFAMVPLLLASGPGAQSRFSIGI 980

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYD 825
             +  G+ +    ++F+     + +  
Sbjct: 981  TITAGLGIGTLLTVFVLPAFYVLLAR 1006



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 79/237 (33%), Gaps = 7/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +       Q  D           F         + +   ++++     I   V
Sbjct: 251 TQIRLQDIARVELGAQSYDQLAMYKGIPATFTAIELAPGANPLTVAKLVKDELPGIRSQV 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P          G +   E I + I  +  + + +LI +++       ++     + L + 
Sbjct: 311 PSGLEVQLAYDGSQFIEESISEVIKTLAEALVIVLIVVFLSLGSVRASIVPAIAVPLSLV 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  LFG   NL  + +++  IG  V+D +++ + +    +      S  D      
Sbjct: 371 GGAFVMLLFGFSLNLLTLLSMVLAIGLVVDDAIIMVENIH---RHIENGKSRYDAAIHGA 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            E     +  +        P+   G   GS+   FA  +A  +VV+   ++ ++  +
Sbjct: 428 REMAVPIIAMTTTLVAVYAPIGFMGGLVGSLFTEFAFTLAGTVVVSGIVALTLSPML 484


>gi|198275646|ref|ZP_03208177.1| hypothetical protein BACPLE_01817 [Bacteroides plebeius DSM 17135]
 gi|198271275|gb|EDY95545.1| hypothetical protein BACPLE_01817 [Bacteroides plebeius DSM 17135]
          Length = 1076

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/623 (12%), Positives = 165/623 (26%), Gaps = 58/623 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGVI-----GLATLPVTQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +        I   +      +I++ F      +  A  V  
Sbjct: 51  TGANAQTVLNSVIAPLEDQINGVENMMYIQSSASNNGSAEISVYFNQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +++      +   +            I ++   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQNSMLLIFSLYDAEDKYNIEFIENYAKINLIPEVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P  + Q     + +S      N       FG    R + 
Sbjct: 171 KGVGDANVMG-QDYSMRIWLKPDVMAQYNLVPSDISGVLAEQNIEAAPGQFGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +T +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQTEEFEDIVVKALPNGEVLRLGDVARIELGRLAY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     + +             V +        
Sbjct: 274 TFNNTVNGHKAVTCIVFQMAGTNATETINNLLDVISKAEESLPAGLKINVAQNANDFLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVIKTLIEAFVLVFIVVYVFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSVNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIA 473
           + +VL I + VD  I+V E +  +  +   S   +     S    A  +I    ++  I 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSSREASIDAMSELGGALVSITLVMMSVFIP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKK 519
              +    G   R F ITM +SI  S   A+++  A+                  +  + 
Sbjct: 454 VSFMGGTAGTFYRQFGITMAISIAFSALNALTLSPALCAIFLKPHDSEHKQKKMSMVDRF 513

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
             S +    S        +     +       ++    +    +  T       +  G I
Sbjct: 514 HTSFNAAYDSLLKSYKKRVVFFIHKKWLSFGLVAASIVLLMFFMKTTPTGMVPNEDTGTI 573

Query: 580 QLGVLANRPVDLSVVRSNLESLQ 602
              V              L  + 
Sbjct: 574 MGAVTLPPGTSQERAMEVLAKVD 596



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 68/236 (28%), Gaps = 23/236 (9%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N    ++     +   T    +          L      E+ G             G+I 
Sbjct: 819  NLYTSMKVMVAPASGYTSGQALQAIAEVAKENLPMGFGYELGGMAREEAQSSGSTTGIIF 878

Query: 676  SAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALFGIEFNLTAV----- 723
                + +Y+ +      +   L  + +    L+       GF AL  I      +     
Sbjct: 879  VLCFVFVYLLLSAQYESYILPLAVLLSVPFGLMGSFIFVNGFSALGSIPALKMILGTMSN 938

Query: 724  -----AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
                  A++ L+G    + +++ +     +      +S            L   + TS+A
Sbjct: 939  DIYMQIALIMLMGLLAKNAILIVEFA---LDRRKQGMSISWAAVLGAAARLRPILMTSLA 995

Query: 779  AFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              + ++P+ +  G               G+++     IFI   + +     + K  
Sbjct: 996  MIVGLIPLMLAMGVGAHGNRTLGASAIGGMLIGMIFQIFIVPVLFVVFQWLQEKFK 1051



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/222 (17%), Positives = 83/222 (37%), Gaps = 9/222 (4%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      L  V  K  E +P     N            I + I  +I + +
Sbjct: 288 IVFQMAGTNATETINNLLDVISKAEESLPAGLKINVAQNANDFLYASIHEVIKTLIEAFV 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I +++        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYVFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSVNLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R+    +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SSREASIDAMSELGGALVSITLVMMSVFIPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFI---YDWRAKNARI 833
             F I MA  I  +A +++ ++  +       +D   K  ++
Sbjct: 466 RQFGITMAISIAFSALNALTLSPALCAIFLKPHDSEHKQKKM 507


>gi|127512110|ref|YP_001093307.1| acriflavin resistance protein [Shewanella loihica PV-4]
 gi|126637405|gb|ABO23048.1| acriflavin resistance protein [Shewanella loihica PV-4]
          Length = 1042

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/592 (9%), Positives = 158/592 (26%), Gaps = 26/592 (4%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +   +    ++  + +          R   ++IT+SF            V  
Sbjct: 51  YSGASASIMESQITTVLEDELTGISGIDEITSVTRNGMSRITISFDLDWNLTEGVSDVRD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +     +L  +  + ++          V    +         + +    R   D+  + 
Sbjct: 111 AVARAQRRLPDEADEPIVSKDNGSGEPSVYINLSSS--TMDRTQLTDYAQRVLEDRFSLI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                   S  +   +  + DP  +     TT  ++      N    G            
Sbjct: 169 TGVSSVNISGGLYKVMYVQLDPKLMAGRGVTTTDITDALRSENVESPG------------ 216

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                   +V      +   TA            +          +      +       
Sbjct: 217 -------GEVRNDTTVMTVRTARLYLHPEDFDYLVVRTASDGSPIYLKDVARVFIGAENE 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             ++  +     +        L+          V+  +      
Sbjct: 270 NSTFKSDGVPNLSLGIVAQSDANPLQVAQRVREEVDKLQKFLPEGTQLSVDYDSTVFIDQ 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T  I   LV++VL++ +   +  L+   ++ +++I      + LG ++ L ++
Sbjct: 330 SIGEVYNTLYITGALVVLVLYLFIGQARATLIPAVTVPVSLISAFIAANYLGYSINLLTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I     + +    +   G       +  +    ++  + +
Sbjct: 390 MALILAIGLVVDDAIVVVENIFHHIERGEPAILAAYKGAREVGFAVVATTAVLVMVFLPI 449

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFF 532
            F  G        FA+ + ++++ S   A+++   +   +++ K        +       
Sbjct: 450 SFMDGMVGRLFTEFAVMLAMAVIFSSVIALTLTPVLGSKLLKRKHRPKALNRLMDSGFAR 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L            R+      ++ +      L  + +   +  +    +     +  + +
Sbjct: 510 LEAWYRRAVAWAVRYRLAAPVVIVACVIGSGLLMNQVPAQLAPQEDRGVIFAFVKGAEGT 569

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                  ++ I +        +          P            V  ++ +
Sbjct: 570 SYNRMTSNMDIVEQRLMPLLSQGVIKSFSVQAPAFGGRAGDQTGFVIMQLED 621



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 86/256 (33%), Gaps = 7/256 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                 P+ L  V       +  + +F++       L  +     + +   + +     K
Sbjct: 247 TASDGSPIYLKDVARVFIGAENENSTFKSDGVPNLSLGIVAQSDANPLQVAQRVREEVDK 306

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII-SAIAMLIYIWIRFKWYFALGAITTL 700
           + + +P  T  + +        + I +    + I  A+ +L+      +    L    T+
Sbjct: 307 LQKFLPEGTQLSVDYDSTVFIDQSIGEVYNTLYITGALVVLVLYLFIGQARATLIPAVTV 366

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +          G   NL  + A++  IG  V+D +VV + +                
Sbjct: 367 PVSLISAFIAANYLGYSINLLTLMALILAIGLVVDDAIVVVENI---FHHIERGEPAILA 423

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
             K   E     V T+    +  LP++   G V      FA+ +A  ++ ++  ++ +  
Sbjct: 424 AYKGAREVGFAVVATTAVLVMVFLPISFMDGMVGRLFTEFAVMLAMAVIFSSVIALTLTP 483

Query: 818 PILLFIYDWRAKNARI 833
            +   +   + +   +
Sbjct: 484 VLGSKLLKRKHRPKAL 499



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 49/146 (33%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + I        L G+  N+ +   ++ LIG    + +++ +      
Sbjct: 874  SFINPLVVMLTVPMGIFGGFIGLYLMGLGLNIYSQIGMIMLIGMVTKNGILIVEFAN--- 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L     S    I  +    L   + T+    +  +P+ +    G     +    + FG+
Sbjct: 931  QLRDRGASLEQAILDASARRLRPILMTAFTTLVGAVPLILSSGAGSESRIAVGTVVFFGM 990

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A   ++ +   +   I        
Sbjct: 991  AFATLVTLLVIPAMYRLISGRTRSPG 1016


>gi|91205965|ref|YP_538320.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rickettsia
           bellii RML369-C]
 gi|91069509|gb|ABE05231.1| Hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rickettsia
           bellii RML369-C]
          Length = 1008

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/621 (12%), Positives = 169/621 (27%), Gaps = 45/621 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  +G +     F  +  +   P       I+         +      
Sbjct: 9   KRPVFATVLSLVILVLGTI-----FFTKLQIRGTPDISIP-IIN--------VNAFYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +  ++   +    ++    +K            Q+ ITLSF  S   E   + V   +  
Sbjct: 55  DALYMEKEITTRIEKALKTVKNLDYITSQSSTGQSSITLSFLLSTDIEVALNDVRSKISD 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +      D K   +          +      +Q     +E +  +       +   ES  
Sbjct: 115 ITYMFPQDMKAPSVAKLDADSFPSLFISVESEQYND--LELTKIVEDYLQTPLDKLESVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  E DP +L Q   +   +       N                   + 
Sbjct: 173 QSQIYGGNEYIMRIEPDPKKLYQHKISLLDIEVAIREQNKDYPAGNIKTGVNNFIVTLEG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E   I +                                   +           
Sbjct: 233 SLSKPEEFGNIIIKV--------------------QDNSIIKLQDIAKVYLTAPDSEVLF 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +              ++          +          S   
Sbjct: 273 RYNGKNSIALGLIKESKANVIDLSNDVTKEIEKVKESIPKGISLNIAYDGAKPVRASIYA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V ++ +   K  L+   +I +++I T +++  +G ++ + ++  ++
Sbjct: 333 VFQTIFEALILVILVTYLFLASAKITLIPFVTIPVSLIGTFSVMYAMGFSINIFTLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I   N        +  +        I    IT     + + F  
Sbjct: 393 LAIGLVVDDAIVMLENIFRYNEMGHKPMEAALLASKEIGFAIIAMTITLAAVFLPVGFID 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR------FF 532
              G     FA T+   +L S F A+++   M   +I      ++               
Sbjct: 453 GFVGKLFIEFAWTLAFCVLFSGFVALTLTPMMSSRMITKHNAPTLKFLVKFNELLQLIQD 512

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                + + F   + + + I+  F +  I   F        +  G +QL         L 
Sbjct: 513 KYIYYLNLTFDNKKKFVLIIAASFVVLIISFKFVQKTFIPQEDDGFLQLSFKGPEGSSLE 572

Query: 593 VVRSNLESLQIGDISFQNFDG 613
                +   +    ++++  G
Sbjct: 573 HSTEVVIEAEKILANYKDIAG 593



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 85/245 (34%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I + V  N  + L  +     +    ++ F+        L  ++    + +  +  + 
Sbjct: 241 GNIIIKVQDNSIIKLQDIAKVYLTAPDSEVLFRYNGKNSIALGLIKESKANVIDLSNDVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              +K+ E +P     N    G K  R  I      +  + I +++            L 
Sbjct: 301 KEIEKVKESIPKGISLNIAYDGAKPVRASIYAVFQTIFEALILVILVTYLFLASAKITLI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T       G   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 361 PFVTIPVSLIGTFSVMYAMGFSINIFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGH 417

Query: 756 SFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +    T  A F+ V  +  + G +   FA  +AF ++ +   +
Sbjct: 418 KPMEAALLASKEIGFAIIAMTITLAAVFLPVGFIDGFVGKLFIEFAWTLAFCVLFSGFVA 477

Query: 813 IFIAA 817
           + +  
Sbjct: 478 LTLTP 482



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 137/421 (32%), Gaps = 16/421 (3%)

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IAG ++ IG     N+L    +++  ++++S    +    ++ +S I    + A+    +
Sbjct: 591  IAGYLMVIGAGGSDNVLSFVPLKDWKQRSRSQET-IKNMLNKQFSEIAGMKVFAMDPRSM 649

Query: 477  LFFFGGGAVRGFAITM--------GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            +   GG  +     T              I +  A  I   +   +       +I+IN  
Sbjct: 650  VSSGGGSPIEFTIQTNLEYDDLDKISQQFIDIMKANPIFSNVNRNLQSAMPTIAIEINRD 709

Query: 529  SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
              +    +   I               F + +         N            +L    
Sbjct: 710  KAYLYGMNMANIGKTVQYLLAGQQVGDFRMGNDLYEVMLQFNQKDRSSISDFSKILIPTK 769

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             +  +   ++ ++              +  V +             +  + K   +++  
Sbjct: 770  NNNMLPLESIANITEKISVKSYSHYNNSKSVTISSDLSPDSKIEEAINEINKIAVKLLDP 829

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                   I   K  +E     ++    + I + + +  +F+ +   L  +  +   IT  
Sbjct: 830  GNTILEYIGEIKQMKEADSNMLMTFGFALIFIYLVLAAQFESFVDPLLILLAVPFSITGG 889

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            +    + G   N+ +   ++TLIG    + +++ +      +L     + R+ I ++   
Sbjct: 890  VLTLWISGNSLNMYSNIGLITLIGLITKNSIMIVEFAN---QLREKGANIRNAIIEACTL 946

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + T++AA +  +P+      G S   S  + +  G+ +    +IF+   I     
Sbjct: 947  RLRPILMTTLAAVVGSIPLIFATGAGASARNSIGLVIVGGLSIGTIFTIFVIPVIYQTFK 1006

Query: 825  D 825
             
Sbjct: 1007 K 1007


>gi|19880980|gb|AAM00610.1| unknown [Legionella pneumophila]
          Length = 426

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/438 (10%), Positives = 106/438 (24%), Gaps = 25/438 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I  IG++           + ++P+ +P               + +    
Sbjct: 9   RPVLANVIALFIVFIGIIAIAV-----LPVSQYPAIVPPT-------------IQVTTTY 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
                  L       +   +           +        + ++FA           V  
Sbjct: 51  PGADAKTLINTVALPIEQQVNGVEDMLYMQSTSTSGGTYTLIVTFAIGTDLNYAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   ++L    +K  ++   +    +              +           D++   
Sbjct: 111 RVQAAMAQLPESVQKQGVIVQQKSTAILQFITLTSKNNEYDGVFLDSYATINMQDELSRL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +    DP ++       + +       N        G        
Sbjct: 171 PGVGNVVVFGSGSYAMRVWLDPKKMLAFSLNPSDVLNAISYQNKEVSAGQLGAPPTVGKQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ V    ++S              T       +      +         +       
Sbjct: 231 AYQFTVNVPGQLSDPKEFENIIIKTIDTPPDQNSSASSSA--QVVRIRDVGRVELGSESY 288

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L                +     +      A +     P     +          
Sbjct: 289 NQLANLNGKPTAAIGIFQLPGANALDVAQEVRKAVAKMAKQFPPGLEYSIPFDTTVFVKA 348

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LVLIV+ + +   +  LV   ++ + +I T   + LLG ++ L ++
Sbjct: 349 SIEEVYKTLFEAGILVLIVIVVFLQNFRASLVPATTVPVTIIGTFFAMLLLGYSINLLTL 408

Query: 418 AGIVLGIGLAVDSNILVN 435
             +VL IG+ VD  I + 
Sbjct: 409 FALVLAIGIVVDDAIAIV 426



 Score = 45.1 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 54/156 (34%), Gaps = 1/156 (0%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V +  V       +  +            +   Q    +++   + +     K+ +  
Sbjct: 271 QVVRIRDVGRVELGSESYNQLANLNGKPTAAIGIFQLPGANALDVAQEVRKAVAKMAKQF 330

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P     +         +  I +    +  + I +LI I +  + +  +L   TT+ + I 
Sbjct: 331 PPGLEYSIPFDTTVFVKASIEEVYKTLFEAGILVLIVIVVFLQNFRASLVPATTVPVTII 390

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            T     L G   NL  + A++  IG  V+D + + 
Sbjct: 391 GTFFAMLLLGYSINLLTLFALVLAIGIVVDDAIAIV 426


>gi|57167976|ref|ZP_00367115.1| protein-export membrane protein SecD [Campylobacter coli RM2228]
 gi|57020350|gb|EAL57019.1| protein-export membrane protein SecD [Campylobacter coli RM2228]
          Length = 478

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 141/491 (28%), Positives = 258/491 (52%), Gaps = 26/491 (5%)

Query: 56  LVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           ++L VD  + V   ++  +  L     KE I    +    + +  +  D+       + +
Sbjct: 1   MLLGVDNQEAVKSKIKSVASSLSYSFNKENILNDGLNIHDDSLDFTLLDNADIVKTENLL 60

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                             L V   +   +I  +   +  + + A+ Q++E IR R+DQ G
Sbjct: 61  KEI-------------NGLNVQREDMHYTISFTSEEVKSIENFALLQAVETIRNRLDQFG 107

Query: 176 ISESTIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR- 231
           ++E T+ + G  +IL++L G +   D  R ++ +   A +   +V  +   +        
Sbjct: 108 LAEPTVAKQGEDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMSQASNMSDAE 167

Query: 232 ---------FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
                        +   +Y ++    + G  L  A       ++ PV++ + +  G+++F
Sbjct: 168 AASYGLVLVPDSRNPNLKYPLKSIPILDGSMLTDARVGLSDTSNYPVINFTLNAEGSKKF 227

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
            + T  N+GK LA+VLD +V +AP IN+ I  G  QISG FT E A  +A  LR+G+L  
Sbjct: 228 ADYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALLA 287

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
            + ++E+R++G  LG+DSI     A++   + IV+FM++ YG  G+ A+ ++ +NV++ +
Sbjct: 288 PVKLLEQRSIGPSLGADSIKMSMIALIGASIFIVVFMVLYYGMAGIFANIAMLVNVLVVV 347

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
           A++++ GATLTLP +AG+VL +G+AVD+N+++NERIRE  R+  ++  S++ G+  A S 
Sbjct: 348 AVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLREGANIKASIEQGYKNAMSA 407

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           I DSNIT+L+ ++ L+ +G GAV+GFA+T+G+ I++SM TAI     M  + +R+ +  +
Sbjct: 408 IIDSNITSLVTSIALYAYGTGAVKGFAVTLGIGIVVSMITAIWGTHGMFDYSMRHIEKSN 467

Query: 523 IDINPLSRFFL 533
                      
Sbjct: 468 NTRFWFGYRRK 478



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 83/160 (51%), Gaps = 4/160 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +GP +  + I+  ++ +I ++I +++++ + +     + A   +++++   +   A+
Sbjct: 294 QRSIGPSLGADSIKMSMIALIGASIFIVVFMVLYYGM-AGIFANIAMLVNVLVVVAVMAM 352

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG    L  +A ++  +G +V+  V++ +R+R+ ++      + +  I++     +   +
Sbjct: 353 FGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRE---GANIKASIEQGYKNAMSAII 409

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            +++ + ++ + +  +G   +  FA+ +  GIVV+  ++I
Sbjct: 410 DSNITSLVTSIALYAYGTGAVKGFAVTLGIGIVVSMITAI 449


>gi|224025642|ref|ZP_03644008.1| hypothetical protein BACCOPRO_02382 [Bacteroides coprophilus DSM
           18228]
 gi|224018878|gb|EEF76876.1| hypothetical protein BACCOPRO_02382 [Bacteroides coprophilus DSM
           18228]
          Length = 1074

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 70/541 (12%), Positives = 149/541 (27%), Gaps = 44/541 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGVI-----GLATLPVTQYPDIAPPT-------------VSVRASY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +        I   +       I++ F      +  A  V  
Sbjct: 51  TGANAQTVLNSVVAPLEDQINGVENMMYIQSSASNNGSADISVYFNQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +++      +   +            I ++   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQNSMLLIFSLYDAEDKYNIEFIENYAKINLIPEVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P  + Q     + +S      N       FG    R + 
Sbjct: 171 KGVGDANVMG-QDYSMRIWLKPDVMAQYNLVPSDISGVLAEQNIEAAPGQFGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +T +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQTEEFEDIVIKALPNGEVLRLGDVARIELGRLAY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     + +             V +        
Sbjct: 274 TFNNTVNGHKAVTCIVFQMAGTNATETINNLLDVISKAEESLPAGLKINVAQNANDFLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVIKTLIEAFILVFIVVYVFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSVNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIA 473
           + +VL I + VD  I+V E +  +  +   S   +     S    A  +I    ++  I 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSSREASIDAMSELGGALVSITLVMMSVFIP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              +    G   R F ITM +SI  S   A+++  A+    ++    +            
Sbjct: 454 VSFMGGTAGTFYRQFGITMAISIAFSALNALTLSPALCAIFLKPHDSEHKPKKMSMVDRF 513

Query: 534 I 534
            
Sbjct: 514 H 514



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 88/310 (28%), Gaps = 28/310 (9%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                       +         ++     +   + +   ++ V +   +       +++ +
Sbjct: 749  MQGYFGGLYASNFNRFGKMYRVMIQAEPDATKNMESLNRIKVRSGNEMAPITQFVSMKKV 808

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               DI  +        ++        S    + +  V K+             E+ G   
Sbjct: 809  YGPDIINRFNLYTSMKVMVAPASGYTSGQALQAIAEVAKENLPTG-----FGYELGGMAR 863

Query: 662  SRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALF 714
                      G+I     + +Y+ +      +   L  + +    L+       GF AL 
Sbjct: 864  EEASTSGSTTGLIFVLCFVFVYLLLSAQYESYILPLAVLLSVPFGLMGSFIFVNGFSALG 923

Query: 715  GIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             I      +           A++ L+G    + +++ +     +      +S        
Sbjct: 924  SIPALKMIIGSMSNDIYMQIALIMLMGLLAKNAILIVEFA---LDRRKQGMSISWAAVLG 980

Query: 765  INETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + TS+A  + +LP+   +G       +       G+++     IFI   + +
Sbjct: 981  AAARLRPILMTSLAMIVGLLPLMFAFGVGAHGNRTLGSSAIGGMLIGMILQIFIVPVLFV 1040

Query: 822  FIYDWRAKNA 831
                 + K  
Sbjct: 1041 IFQWLQEKVK 1050



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 9/222 (4%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      L  V  K  E +P     N            I + I  +I + I
Sbjct: 288 IVFQMAGTNATETINNLLDVISKAEESLPAGLKINVAQNANDFLYASIHEVIKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I +++        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYVFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSVNLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R+    +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SSREASIDAMSELGGALVSITLVMMSVFIPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFI---YDWRAKNARI 833
             F I MA  I  +A +++ ++  +       +D   K  ++
Sbjct: 466 RQFGITMAISIAFSALNALTLSPALCAIFLKPHDSEHKPKKM 507


>gi|157826671|ref|YP_001495735.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rickettsia
           bellii OSU 85-389]
 gi|157801975|gb|ABV78698.1| Hydrophobe/amphiphile efflux-1 (HAE1) family protein [Rickettsia
           bellii OSU 85-389]
          Length = 1008

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/621 (12%), Positives = 169/621 (27%), Gaps = 45/621 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  +I  +G +     F  +  +   P       I+         +      
Sbjct: 9   KRPVFATVLSLVILVLGTI-----FFTKLQIRGTPDISIP-IIN--------VNAFYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +  ++   +    ++    +K            Q+ ITLSF  S   E   + V   +  
Sbjct: 55  DALYMEKEITTRIEKALKTVKNLDYITSQSSTGQSSITLSFLLSTDIEVALNDVRSKISD 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +      D K   +          +      +Q     +E +  +       +   ES  
Sbjct: 115 ITYMFPQDMKAPSVAKLDADSFPSLFISVESEQYND--LELTKIVEDYLQTPLDKLESVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  E DP +L Q   +   +       N                   + 
Sbjct: 173 QSQIYGGNEYIMRIEPDPKKLYQHKISLLDIEVAIREQNKDYPAGNIKTGVNNFIVTLEG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E   I +                                   +           
Sbjct: 233 SLSKPEEFGNIIIKV--------------------QDNSIIKLQDIAKVYLTAPDSEVLF 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +++ +              ++          +          S   
Sbjct: 273 RYNGKNSIALGLIKESKANVIDLSNDVTKEIEKVKESIPKGISLNIAYDGAKPVRASIYA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V ++ +   K  L+   +I +++I T +++  +G ++ + ++  ++
Sbjct: 333 VFQTIFEALILVILVTYLFLASAKITLIPFVTIPVSLIGTFSVMYAMGFSINIFTLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I   N        +  +        I    IT     + + F  
Sbjct: 393 LAIGLVVDDAIVMLENIFRYNEMGHKPMEAALLASKEIGFAIIAMTITLAAVFLPVGFID 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR------FF 532
              G     FA T+   +L S F A+++   M   +I      ++               
Sbjct: 453 GFVGKLFIEFAWTLAFCVLFSGFVALTLTPMMSSRMITKHNAPTLKFLVKFNELLQLIQD 512

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                + + F   + + + I+  F +  I   F        +  G +QL         L 
Sbjct: 513 KYIYYLNLTFDNKKKFVLIIAASFVVLIISFKFVQKTFIPQEDDGFLQLSFKGPEGSSLE 572

Query: 593 VVRSNLESLQIGDISFQNFDG 613
                +   +    ++++  G
Sbjct: 573 HSTEVVIEAEKILANYKDIAG 593



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 85/245 (34%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I + V  N  + L  +     +    ++ F+        L  ++    + +  +  + 
Sbjct: 241 GNIIIKVQDNSIIKLQDIAKVYLTAPDSEVLFRYNGKNSIALGLIKESKANVIDLSNDVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              +K+ E +P     N    G K  R  I      +  + I +++            L 
Sbjct: 301 KEIEKVKESIPKGISLNIAYDGAKPVRASIYAVFQTIFEALILVILVTYLFLASAKITLI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T       G   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 361 PFVTIPVSLIGTFSVMYAMGFSINIFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGH 417

Query: 756 SFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +    T  A F+ V  +  + G +   FA  +AF ++ +   +
Sbjct: 418 KPMEAALLASKEIGFAIIAMTITLAAVFLPVGFIDGFVGKLFIEFAWTLAFCVLFSGFVA 477

Query: 813 IFIAA 817
           + +  
Sbjct: 478 LTLTP 482



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/421 (13%), Positives = 137/421 (32%), Gaps = 16/421 (3%)

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IAG ++ IG     N+L    +++  ++++S    +    ++ +S I    + A+    +
Sbjct: 591  IAGYLMVIGAGGSDNVLSFVPLKDWKQRSRSQET-IKNMLNKQFSEIAGMKVFAMDPRSM 649

Query: 477  LFFFGGGAVRGFAITM--------GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            +   GG  +     T              I +  A  I   +   +       +I+IN  
Sbjct: 650  VSSGGGSPIEFTIQTNLEYDDLDKISQQFIDIMKANPIFSNVNRNLQSAMPTIAIEINRD 709

Query: 529  SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
              +    +   I               F + +         N            +L    
Sbjct: 710  KAYLYGMNMANIGKTVQYLLADQQVGDFRMGNDLYEVMLQFNQKDRSSISDFSKILIPTK 769

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             +  +   ++ ++              +  V +             +  + K   +++  
Sbjct: 770  NNNMLPLESIANITEKISVKSYSHYNNSKSVTISSNLSPDSKIEEAINEINKIAVKLLDP 829

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                   I   K  +E     ++    + I + + +  +F+ +   L  +  +   IT  
Sbjct: 830  GNTILEYIGEIKQMKEADSNMLMTFGFALIFIYLVLAAQFESFVDPLLILLAVPFSITGG 889

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            +    + G   N+ +   ++TLIG    + +++ +      +L     + R+ I ++   
Sbjct: 890  VLTLWISGNSLNMYSNIGLITLIGLITKNSIMIVEFAN---QLREKGANIRNAIIEACTL 946

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + T++AA +  +P+      G S   S  + +  G+ +    +IF+   I     
Sbjct: 947  RLRPILMTTLAAVVGSIPLIFATGAGASARNSIGLVIVGGLSIGTIFTIFVIPVIYQTFK 1006

Query: 825  D 825
             
Sbjct: 1007 K 1007


>gi|29345715|ref|NP_809218.1| putative aminoglycoside efflux pump [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253567703|ref|ZP_04845114.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|29337608|gb|AAO75412.1| putative aminoglycoside efflux pump (Acriflavine resistance
           protein) [Bacteroides thetaiotaomicron VPI-5482]
 gi|251841776|gb|EES69856.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 1034

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/637 (10%), Positives = 169/637 (26%), Gaps = 43/637 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPAEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D I       +          +    +P +
Sbjct: 135 PSQLMTLCLTSTDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAEPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSTVGQFEDIVVRANANGSIIRLKDVARVSLEASSYNTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E        +           +          S      T      LV++V+++ +
Sbjct: 301 MEVAENVKKAMEEISENFPEGLSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  L+   ++ +++I T   + + G ++ + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSINILTLLGLILAIGIVVDDAIVVVEGVEHI 420

Query: 442 NRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSIL 497
               + S + +     +   S +  +++      V + F     G   R F +T+ +S+L
Sbjct: 421 METEKLSPYEATKKAMNGLSSALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ-------FMRARFWGV 550
           IS   A+++   M   I++    K  +I        +                  R    
Sbjct: 481 ISTVVALTLSPVMCSLILKPDSGKKKNIVFRKINEWLGIGSNKYVAAVTRTIKHPRRVLS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              ++     +           ++ +G  ++ +       L   R   E           
Sbjct: 541 AFGMVLIAILLIHRIIPTSFLPVEDQGYFKIELELPEGATLERTRVVTERAIAYLEKNPY 600

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            +  +N          +       + +   +  +   
Sbjct: 601 IEYVQNVTGSSPRVGSNQGRAELTVILKPWEERKSTS 637



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 61/138 (44%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + + +  T GF  +FG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 362 SWRATLIPVVAVPISLIGTFGFMLIFGFSINILTLLGLILAIGIVVDDAIVVVEGV--EH 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
            + T  +S  +   K++N      + TS+      +P+  + G  G +   F + +   +
Sbjct: 420 IMETEKLSPYEATKKAMNGLSSALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSV 479

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   ++   +P++  +
Sbjct: 480 LISTVVAL-TLSPVMCSL 496



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVWVCGLENDVYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDRGEDLIQSAIYAAKLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    I +     + +Y  ++K  +
Sbjct: 1005 IFAIVFGIILVPFFFVMVYKTKSKILK 1031


>gi|325272588|ref|ZP_08138950.1| acriflavin resistance protein [Pseudomonas sp. TJI-51]
 gi|324102272|gb|EGB99756.1| acriflavin resistance protein [Pseudomonas sp. TJI-51]
          Length = 1035

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/516 (11%), Positives = 147/516 (28%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   I  +G +           +   P       +             L   
Sbjct: 9   RRPVATMLLSLAIMLLGGVS-----FKLLPVAPLPEMDFPVIV---------VSANLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S  Q   ++ + F   R  +  A +V   +  
Sbjct: 55  SPEVMASTVATPLERKLGSIAGVTTLTSSSNQGSTRVIIGFEIGRDIDGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + V+   ++   +    +            +       
Sbjct: 115 TRNLLPSGMRSMPTYKKINPSQAPVMV-LSLTSDVLQKGQLYDLADTILAQSLAQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    +P  L Q   +  ++       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIAVEPQLLNQYGLSLDEVRTAVANANQRRPMGFVEDAERNWQVRAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       I   +             I   +    +  
Sbjct: 234 QLEKAKD--------------------YEPIVIRQQNGTILRLSDVAAITDGVENRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         L++         V          S   
Sbjct: 274 FFNDQSAVLLVVNRQAGANIIETVGQIKAQLPALQSLLPASVQLNVAMDRSPVINASLKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+++ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEHTLLIAVVLVILVVYLFLGSLRASLIPSLAVPVSLVGTFAVMYLCGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I       Q    +  +G      T+   N++ +   V + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIEDGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      + F+IT+  +I++S+  ++++   +    
Sbjct: 454 GIVRNLFQEFSITLAAAIIVSLVVSLTLTPMLCARW 489



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 53/152 (34%), Gaps = 7/152 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                  +L     + + +  T     L G   N  ++ A++   G  V+D +VV + + 
Sbjct: 352 FLGSLRASLIPSLAVPVSLVGTFAVMYLCGFSLNNLSLMALILATGLVVDDAIVVLENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +                 E     +  +++     + +   GG V      F+I +A
Sbjct: 411 --SRHIEDGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLA 468

Query: 803 FGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
             I+V+   S+ +   +   ++    A+  R+
Sbjct: 469 AAIIVSLVVSLTLTPMLCARWLRPHNAEQTRL 500



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 94/267 (35%), Gaps = 6/267 (2%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            N    +       V         V  S +   +    + +     +     + +   +  
Sbjct: 757  NPKYAWDPSTLEQVQVITADGARVPLSTIAHYENTLANDRVSHEGQFAAEDIAFDIAEGY 816

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +  + L  V++ +  +     +            +  +     ++ + + + + + I ++
Sbjct: 817  SPDQALAAVERAVATLGLPEGVIAKLGGSADAFAKTQQGQPFMILGALLLVYLVLGILYE 876

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  ++TL       L    L G EF+L ++  +  LIG    + +++ D      
Sbjct: 877  SYIHPLTILSTLPSAGVGALLALYLTGGEFSLISLLGLFLLIGVVKKNAILMID--LALQ 934

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S  + I ++    L   + T++AA +  LP+ +    G  +     + +  G+
Sbjct: 935  LERHQGLSPEESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGL 994

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            V +   +++    + L++   R +  R
Sbjct: 995  VFSQILTLYTTPVVYLYLDRLRHRFNR 1021


>gi|295697288|ref|YP_003590526.1| acriflavin resistance protein [Bacillus tusciae DSM 2912]
 gi|295412890|gb|ADG07382.1| acriflavin resistance protein [Bacillus tusciae DSM 2912]
          Length = 1043

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/694 (11%), Positives = 192/694 (27%), Gaps = 62/694 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++  ++  +G+         +  +D FP                   + + V 
Sbjct: 9   KRPLTISMIVVIVMLLGMY-----VFFRIPIDLFPDIETPV-------------VTVTVK 50

Query: 62  EDDFVNGFLQMYSDELR----SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++    ++     + L+          Q   +I + F      +   +KV  
Sbjct: 51  YPGASPEEVENGVTDVLEKELNTLENLKRISSVSSQNVARIFVEFNYGTNIDLAENKVKS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V   L    +  ++   +  ++ +V      ++        +              
Sbjct: 111 KIDAVLGDLPSTIEVPVVEKVSPADLPVVEVALFGERDDVDLKMLTTFAEDWIKPSFQKI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                         ++    DP+RL+    +  ++       + +             S 
Sbjct: 171 PGVASVTVFGGRTNEVSVALDPNRLQAFHLSINQVEEAIKKDSVTLAVGKAREGQKELSV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                + D  ++  I +   T                               +    A  
Sbjct: 231 KVDADLRDLYQLENISIPTPT--------------------GPPVRLKDLGTVKTQEAEN 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG-SLPIKLNIVEERNVGADL 356
                             +   +              +R           V   +     
Sbjct: 271 NQYAYYNGQKALAMFVYKQKDANTLDVARRLKAEIERIRPELQTAGANIAVTNDSSAFID 330

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S         I A L +++L++ +      LV   +I ++++ T  L+     ++ L +
Sbjct: 331 KSIRTLAEHGLIGATLAVVILYLFLADVAATLVVSTAIPISIVTTFLLMYFSNLSINLIT 390

Query: 417 IAGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +  + LGIGL +D  ++V E I    R + ++VF +   G  +  + +  S IT +I  +
Sbjct: 391 LGALTLGIGLMIDDAVVVLENIFRHYREERKTVFQAAVDGVRQISAPVIASTITKMIVFL 450

Query: 476 VLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI-----------IRYKKMK 521
            L F  G   +     A+T+  S+L S+  ++++   +   +            + K  +
Sbjct: 451 PLLFVQGLTGQLFLPLALTVMYSLLASLVVSLTVTPTITAMLLGLSERSKWLSRQGKIAR 510

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
            +  +           +        F  +   I   I         G        G   +
Sbjct: 511 FLTTSRHKLLNGYRGFLEWALNHKAFVLLPAVISVVIGVALAPLIGGEFMPKMDSGEFTI 570

Query: 582 GVLANRPVDLSV----VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            +        +     V+S L+ L       + F G          +  D       L  
Sbjct: 571 HIDMPPGAKTAETDRVVKSILDRLHAIPEVQETFVGLGATQSNPTIEQTDKAYINVNLLG 630

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            + +      +  +   E+  P +  ++  KG V
Sbjct: 631 KRDRKRSTADVVEMVRRELAMPGVKLKVQEKGFV 664



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 64/180 (35%), Gaps = 5/180 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I + +      G+I + +A++I           L   T + + I  T       
Sbjct: 323 NDSSAFIDKSIRTLAEHGLIGATLAVVILYLFLADVAATLVVSTAIPISIVTTFLLMYFS 382

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            +  NL  + A+   IG  ++D VVV + + ++ +      +        + +     + 
Sbjct: 383 NLSINLITLGALTLGIGLMIDDAVVVLENIFRHYREERK--TVFQAAVDGVRQISAPVIA 440

Query: 775 TSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++   I  LP+    G     F   A+ + + ++ +   S+ +   I   +     ++ 
Sbjct: 441 STITKMIVFLPLLFVQGLTGQLFLPLALTVMYSLLASLVVSLTVTPTITAMLLGLSERSK 500



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 88/236 (37%), Gaps = 7/236 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            +   + S  +   E    +              V   + K++                 K
Sbjct: 797  VTGQNSSPSDIYRENQVRMAFVTADLYQTDLQTVNAAIHKQLESYPLPKGYTIEFGGETK 856

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
               E   +  + +I++ I +   +   F+ +      + ++        G   LF   F+
Sbjct: 857  DMAESFSQLGISLILAIILIYAVMVAEFETFRHPFIIMFSIPATAIGITGSLLLFNRHFS 916

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            ++++  ++ L G  V++ +V+ D M+   +L    +S R+ + ++    L   + T+ AA
Sbjct: 917  ISSIMGMIMLAGIIVSNGIVMIDLMK---QLREKGLSAREAVLRAGPLRLTPVLITAGAA 973

Query: 780  FISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +VLP+AV    G  +    A  +  G+ V    ++ I   +   +   RA+  R
Sbjct: 974  VFAVLPLAVATSEGSEMNAPMATVVMGGLSVGTLITLVIIPVLYDGMETLRARRKR 1029


>gi|237800666|ref|ZP_04589127.1| acriflavin resistance protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023525|gb|EGI03582.1| acriflavin resistance protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 1034

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/551 (11%), Positives = 149/551 (27%), Gaps = 39/551 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNPADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLISASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++   AN   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDANDQLKSPEEYANLILAYKNGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIDVVDRIKTLLPGITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V  + +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIVLVVLVTLLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPMQAALKGAKQIGFTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++ILIS+  ++++   M   +   ++ K  D +   R         
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARL-LKREPKEEDQSRFYRASGAWIDWL 513

Query: 540 IQFMRARFWGV 550
           I     R   V
Sbjct: 514 IDVYAGRLRWV 524



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 57/146 (39%), Gaps = 8/146 (5%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            ++   +     + L +  T G   L G   N   + A+    G+ V+D +V+ + +   
Sbjct: 354 RRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMALTIATGFVVDDAIVMLENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAF 803
            +      +      K   + +G ++ +   + I+VL   ++   V+      FAI +A 
Sbjct: 411 SRHIEEGETPMQAALKGAKQ-IGFTLISLTLSLIAVLIPLLFMADVVGRLFREFAITLAV 469

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAK 829
            I+++   S+ +   +   +     K
Sbjct: 470 AILISLVVSLTLTPMMCARLLKREPK 495


>gi|314934766|ref|ZP_07842125.1| membrane protein YdfJ [Staphylococcus caprae C87]
 gi|313652696|gb|EFS16459.1| membrane protein YdfJ [Staphylococcus caprae C87]
          Length = 949

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/629 (13%), Positives = 199/629 (31%), Gaps = 58/629 (9%)

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
           H +   A+     H    +   D+   +   +   +       V        +  +N   
Sbjct: 64  HQDSQKASMKIVFHSDKKNGITDKDTKKDIEKALDNIKQDDDYVQNVSNPYDSHQVNDDK 123

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            +  A ++           +  +    L         +      GS +   G  + + G+
Sbjct: 124 DTAIATVNYVVNQTALQDSSKKIIDRELDDVKADHNLKIEQTQGGSMNSEVGGSSELVGI 183

Query: 373 V--LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLA 427
           V   I+L +         +   S  + +  ++ +++LL     +P+      +++G+ + 
Sbjct: 184 VTAFIILLITFGSLIAAGMPIVSALIGLGSSVGIIALLTFIFDIPNFTLTLAVMIGLAVG 243

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           +D ++ +  R +E  ++      ++      A S +  + +T +IA   L   G   +  
Sbjct: 244 IDYSLFILFRYKEVRKRGLEPVEAIATAVGTAGSAVIFAGVTVMIAVCGLSLVGIDFLAI 303

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
                 +S+L ++  A++++ A++    +  K+K                  +       
Sbjct: 304 MGFASAISVLFAVLAALTLLPALISVFHKRIKIKDKPEKNKDPKNHPWAKFVVGKPIIAI 363

Query: 548 WGVGISILFSICSICLL--------------------FTHGLNYGIDFKGGIQLGVLANR 587
               + ++ +   +  +                         N+G  + G I + V    
Sbjct: 364 IISLLILIAAALPVSGMRLGIPDDSLKANNTSAHKAYNLITDNFGAGYNGQIVMLVNTKD 423

Query: 588 -------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                    DL+ +R +++ +   D        + N    +   P D         +V  
Sbjct: 424 GGSKKDIQQDLNNIRDDIKDMDNVDKVASPQLNDNNHYALISIIPEDGPNAQSTNNLVYD 483

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG--------IVGVIISAIAMLIYIWIRFKWYF 692
                       +        S   I           +   +I  +A ++ +++      
Sbjct: 484 LRDYNKTAKEKYDFNTEISGQSVINIDMSEKLNEAIPVFAGVIVLLAFVLLVFVFRSILV 543

Query: 693 ALGAITTLILDITKTLGFF----------ALFGIEFNLT-----AVAAVLTLIGYSVNDK 737
            L A+   +L +  TLGF           +LFG+E          V  +  L G +++ +
Sbjct: 544 PLKAVLGFVLSLLATLGFTTLVMQDGFLGSLFGVENTGPLLAFLPVITIGLLFGLAIDYE 603

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           + +  R+ +    Y+ +      I   I E+    V  ++  F   +       S I S 
Sbjct: 604 LFLMTRVHEE---YSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFVFQEDSAIKSM 660

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I +AFG++  A        P L  ++  
Sbjct: 661 GISLAFGVLFDAFVVRMTLIPALTKLFGK 689


>gi|255531154|ref|YP_003091526.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Pedobacter heparinus DSM 2366]
 gi|255344138|gb|ACU03464.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pedobacter heparinus DSM 2366]
          Length = 1044

 Score =  149 bits (376), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 77/579 (13%), Positives = 153/579 (26%), Gaps = 45/579 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N     ++  +I  +GLL      L    + ++P   P                  +   
Sbjct: 8   NPVLSTVISVIIVILGLL-----GLFSLPISQYPDIAPPAV---------EVSTAYQGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLF 118
            D V   ++     L   +   E +   + +   +    IT++F      +  A  V   
Sbjct: 54  ADVV---MKSVIIPLEEQINGVENMTYMTSKASNDGSASITINFKQGTDPDMAAINVQNR 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +    S L  +  K  + T+      +       +            +    I QI   +
Sbjct: 111 ITKATSLLPAEVVKMGITTSKRLNSEVFSFLLYSEDGKYDQKFLDNYLKINIIPQIKRIQ 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +     P  +       A +       N        G    +    
Sbjct: 171 GIGDAQVYGGKDYSMRIWLKPDAMAAYGLIPADIVNALAEQNIEAAPGKVGENSNQSFQY 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                                    K  +    I       +        +I        
Sbjct: 231 TLKYTGR----------------FEKAEEFEHIILKSVGNGQVLKLKDVADINLGSFTYS 274

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                          S  +  + +  I     +               V          S
Sbjct: 275 STLTAQGQESPYVAVSQTSGSNAHDIIRQCEKILKDAEKSFPKGVKIGVFANANEFLDAS 334

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            S    T      LV IV+F+ +   +  L+   ++ + +I T   L L G T+ L ++ 
Sbjct: 335 ISKLIFTIIEAFILVFIVVFIFLQDFRSTLIPAIAVPVAIIGTFFFLKLFGFTINLLTLF 394

Query: 419 GIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            +VL IG+ VD  I+V E +  +     +S   +     S   S I    +      V +
Sbjct: 395 ALVLAIGIVVDDAIVVVEAVHAKLDHGAKSAKKATLHAMSEISSAIISITLIMAAVFVPV 454

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSR 530
            F  G      + F +T+ ++I+IS   A+++  A+   +      + ++K   +     
Sbjct: 455 TFVTGSVGVFYKQFGLTLAVAIIISAVNALTLSPALCALLLKPHQGHDQVKKGFMQRFYD 514

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
            F           +     +      +   I L      
Sbjct: 515 GFNASFSAMTNRYKKSVVFLVNRKWIAFMGIALFSVLFW 553



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 89/248 (35%), Gaps = 6/248 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V   + + L  V            +      E  ++   Q    ++    R  E + K 
Sbjct: 251 SVGNGQVLKLKDVADINLGSFTYSSTLTAQGQESPYVAVSQTSGSNAHDIIRQCEKILKD 310

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
             +  P            +     I K I  +I + I + I ++I    +   L     +
Sbjct: 311 AEKSFPKGVKIGVFANANEFLDASISKLIFTIIEAFILVFIVVFIFLQDFRSTLIPAIAV 370

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + I  T  F  LFG   NL  + A++  IG  V+D +VV + +   +       S +  
Sbjct: 371 PVAIIGTFFFLKLFGFTINLLTLFALVLAIGIVVDDAIVVVEAVHAKLDHGAK--SAKKA 428

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
              +++E     +  ++      +P+    GSV      F + +A  I+++A +++ ++ 
Sbjct: 429 TLHAMSEISSAIISITLIMAAVFVPVTFVTGSVGVFYKQFGLTLAVAIIISAVNALTLSP 488

Query: 818 PILLFIYD 825
            +   +  
Sbjct: 489 ALCALLLK 496



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 53/152 (34%), Gaps = 6/152 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
             +       +      + +L + +     F  LFG++ N+    +++ LIG    + +++
Sbjct: 885  FLLSAQYKSYILPFSVLLSLPIGLAGAFLFARLFGLDNNIFLQISLIMLIGLLAKNAILI 944

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSF 797
             +     +    +  +            L   + TS A    +LP+ V  G   I   S 
Sbjct: 945  VEFA---LMHRLSGRNLVQSAIAGATARLRPILMTSFAFVFGLLPLMVATGAGAISNRSI 1001

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                  G+++     +F+   + +     + K
Sbjct: 1002 GTAAVGGMLIGTVFGVFVIPVLFVVFQALQEK 1033


>gi|163760467|ref|ZP_02167549.1| acriflavin resistance protein [Hoeflea phototrophica DFL-43]
 gi|162282418|gb|EDQ32707.1| acriflavin resistance protein [Hoeflea phototrophica DFL-43]
          Length = 1083

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/520 (12%), Positives = 151/520 (29%), Gaps = 43/520 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL       L  + +   P       I++  D  G         
Sbjct: 50  RRPVLAMVISLLIVVAGLA-----GLYGAEIRELPDVDRP-VITVTTDFSG--------A 95

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  L    +   + +        +    ++++T+ F DS      A  V   L  
Sbjct: 96  APETVDRELTAIIEGAVARVADVASISSTSTLGRSRVTIEFNDSSDLNVAASDVRDSLGR 155

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L     +  +V        ++      D       + ++ +    +D++       
Sbjct: 156 VTNSLPDGADEPRIVKADANSDPVMRLAVTSD--RLDVQDMTILVEDLVVDRLAAVPGVA 213

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D SRL     T A +                  R          
Sbjct: 214 DVAVYGDREKIFRVDIDQSRLAAFGLTLADLRNALRNVALDVPAGSLTARSSDIVVRATA 273

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +        +++N                         R       ++           
Sbjct: 274 DITTPEGFENLYIND------------------------RVRFRDVASVTLGADPGDTVL 309

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     +        +           V   +     G+   
Sbjct: 310 RANGRTGIGMGIIRQSASNTLEISQGVRAATLTIAEILPEGVDIRVTSDDARFIRGAIDE 369

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   +V+ ++F+ +   +  ++   ++ + +I   A + L G ++ + ++  +V
Sbjct: 370 VRSTLILAVLIVIAIIFLFLRDWRATIIPAVTLPVALIGAFAAIWLAGFSVNILTLLALV 429

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  G+ VD  I+V E I  +  +   V  +  +G    +  +  +  T     + + F  
Sbjct: 430 LATGMVVDDAIVVLENIVRKRNEGMGVRAAAVIGTKEVFFAVVTTTATLAAVFIPISFLP 489

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
              GG    F   +  ++LIS   A+++   +   +I+ K
Sbjct: 490 GQAGGLFTEFGFVLAFTVLISSVVALTLCPMLASRMIKEK 529



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 30/198 (15%), Positives = 68/198 (34%), Gaps = 13/198 (6%)

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            + + + E V +    +          E+    I+ V+I    + +++     W   +  
Sbjct: 342 TIAEILPEGVDIRVTSDDARFIRGAIDEVRSTLILAVLIVIAIIFLFL---RDWRATIIP 398

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             TL + +        L G   N+  + A++   G  V+D +VV + +   ++     + 
Sbjct: 399 AVTLPVALIGAFAAIWLAGFSVNILTLLALVLATGMVVDDAIVVLENI---VRKRNEGMG 455

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
            R        E     V T+       +P++      G +   F   +AF +++    S 
Sbjct: 456 VRAAAVIGTKEVFFAVVTTTATLAAVFIPISFLPGQAGGLFTEFGFVLAFTVLI----SS 511

Query: 814 FIAAPILLFIYDWRAKNA 831
            +A  +   +     K  
Sbjct: 512 VVALTLCPMLASRMIKEK 529



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 73/168 (43%), Gaps = 7/168 (4%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             +  R  ++   I+ I +L+ +  +F+ +  AL  I+T+ L +   +   A+ G   N+ 
Sbjct: 884  DQSSRDLLITFGIAIIVVLLVLAAQFESFVSALIIISTVPLGLACAIFAIAMTGGSLNVY 943

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            +   ++ L+G    + +++ +      +L    +  R  I+++ N  L   + T ++  +
Sbjct: 944  SQIGLVLLVGVMAKNGILIVEFAN---QLRNRGMDVRSAIEEASNIRLRPVMMTMISTVL 1000

Query: 782  SVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +P+ +    G     +    +  G+ +A  +++ +     L +  +
Sbjct: 1001 GSVPLLLAFGAGAEARVALGWVIVGGLGLAMVATLLLTPVAYLLLARF 1048


>gi|308449061|ref|XP_003087842.1| hypothetical protein CRE_07183 [Caenorhabditis remanei]
 gi|308252509|gb|EFO96461.1| hypothetical protein CRE_07183 [Caenorhabditis remanei]
          Length = 716

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/649 (11%), Positives = 179/649 (27%), Gaps = 33/649 (5%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD 75
            + LL++         +   P       I      + G++        D V   +    +
Sbjct: 1   MLALLLSGFLVWRLLPVSALPQV--DYPIIQVYTFQPGAN-------PDTVQRTITAPLE 51

Query: 76  ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL 135
                +        S     + ITL F  S     +  +V   L   +SKL  D     +
Sbjct: 52  REMGKIAGLKQMSSSSSVGASVITLQFELSAELGVVEQEVQSALSTASSKLPNDLPAPPI 111

Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195
                     V++   I             +  +   ++           +      +  
Sbjct: 112 YRKVNPADVPVIT-LAISSETLPLTTVYDMVDTRVAQKLSQLSGVGMISLAGGQRPAIRV 170

Query: 196 EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLN 255
           + + + L     +   +       N ++    F   +          +    +       
Sbjct: 171 QMNAAALAAYKMSAEDVRSAINSANANQPKGSFDGPYRTTMLDANDQIRSIAD------- 223

Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSG 315
                          ++                 + +            +          
Sbjct: 224 -------------YENLILRWNNGAPIRLRDVAKVIEGSEDRYMAAWAGSQAAILVNVQR 270

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           +   +     +    +   L           V      +   S    +        LV++
Sbjct: 271 QPNANVIQVADQIKQILPELEKNLPENVKIRVLTDRTESIRSSIDDVQKELVFAVCLVVM 330

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
           V F+ +      ++   ++ L++I T  ++  LG ++   ++  + +  G  VD  I++ 
Sbjct: 331 VTFLFLRNLSATIIPSIAVPLSIIGTFVVMYFLGFSVNNLTLMALTIATGFVVDDAIVML 390

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITM 492
           E I       +S+  +   G      T+    I+ +   + L F G   G     FA+T+
Sbjct: 391 ENIARHREAGESLLQAALKGSKEIGFTLISLTISLIAVLIPLLFMGDVVGRLFHEFAVTL 450

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
             +I IS+  ++++   M  ++++  K  S +        +     A+Q++         
Sbjct: 451 AAAIAISLVVSLTLTPMMCAYLLKNAKHSSSNSRWSLDRIIQQYGKALQWVFRHQILTLA 510

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            +L S+    LL+          +    + V+   P D+S    +     +     ++  
Sbjct: 511 VMLSSVILAGLLYWMIPKGFFPVQDSGVIQVVTEAPDDISFQAMSQRQQALAGQILKDPA 570

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
            E              ++  R+L  +K           +        ++
Sbjct: 571 VESLSSFIGIDANNPKLSNGRILINLKPHAERDPVDQIMARLRGQFAQV 619



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 83/280 (29%), Gaps = 14/280 (5%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
           +              N  + +  G  + +     V        + +      +       
Sbjct: 211 MLDANDQIRSIADYENLILRWNNGAPIRLRDVAKVIEGSEDRYMAAWAGSQAAILVNVQR 270

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +     +Q           + + + + +   V     ++       + +EL       V 
Sbjct: 271 QPNANVIQVADQIKQILPELEKNLPENVKIRVLTDRTESIRSSIDDVQKEL-------VF 323

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              + +++           +     + L I  T       G   N   + A+    G+ V
Sbjct: 324 AVCLVVMVTFLFLRNLSATIIPSIAVPLSIIGTFVVMYFLGFSVNNLTLMALTIATGFVV 383

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +V+ + +    +      S      K   E     +  +++    ++P+   G   G
Sbjct: 384 DDAIVMLENI---ARHREAGESLLQAALKGSKEIGFTLISLTISLIAVLIPLLFMGDVVG 440

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   FA+ +A  I ++   S+    P++       AK++
Sbjct: 441 RLFHEFAVTLAAAIAISLVVSL-TLTPMMCAYLLKNAKHS 479


>gi|78357424|ref|YP_388873.1| acriflavin resistance protein D [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219829|gb|ABB39178.1| acriflavin resistance protein D [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 1092

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/549 (14%), Positives = 158/549 (28%), Gaps = 37/549 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    +++   +I   G L  L      S     P                         
Sbjct: 65  RKPVSILVGVILIALFGTLGLLGMPYQLSPTVTEPEIT--------------VRTTWTGA 110

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++    L    +   +    + +ITL FA     ++   +V+  L  
Sbjct: 111 TPYEVERDVLEEQEKALKGLTGLLVMESTASNGRGEITLRFAVGTNLDDAVLRVSNKLDE 170

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-LSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           V      +  + ++  T      IV +    +                +    +   +  
Sbjct: 171 V-PSYPDNVDRPVISATGASSSPIVWMVLKALPDNPRSVETYRTFFEDEVRQDLERVKGV 229

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            + +       ++    DPSRL     T   +       N +       V          
Sbjct: 230 AELMVYGGTEREMQVMIDPSRLAAHGLTINDLRRVLEAENVNISAGNLDVGRRAYRIRTV 289

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  +I                    V I        R  +V R + G     V   
Sbjct: 290 GNFSSPDDIE------------------QVVIQSTGQNRIRVGDVARVSFGYAKRTVSIQ 331

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
               A ++        A +        A + A                        G+  
Sbjct: 332 HNGDAGIVCGIKAEPGANVLDVTNDTEAVVNALNDGILKENGLFFEWSSDQRPYINGAID 391

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           + K    I   L + VL + +      ++   +I ++V+ T   ++L G  L + S+AGI
Sbjct: 392 LVKQNIIIGGVLAVCVLLVFLQSVSSTVIVAVAIPISVVGTFIFMNLFGRNLNVVSLAGI 451

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +G+ VD+ I+V E I       +S + +   G    +  +  S +T +   + + F 
Sbjct: 452 SFAVGMLVDNAIVVLENIDRHRSMGKSPYKAAYEGTREVWGAVLASTLTTVAVFLPVVFI 511

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   +  AI +  +I++S+F +IS++  +      + + K       +        
Sbjct: 512 EQEAGQLFKDIAIAVTCAIILSLFVSISVIPMLANLFFSFARKKGPRKGIAAVNAAGRGF 571

Query: 538 IAIQFMRAR 546
            A+     R
Sbjct: 572 SAVMMGIVR 580



 Score = 85.5 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 90/283 (31%), Gaps = 13/283 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  + T G     D    + +       + +  V           +S Q+      
Sbjct: 279 VGRRAYRIRTVGNFSSPDDIEQVVIQSTGQNRIRVGDVARVSFGYAKRTVSIQHNGDAGI 338

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKI-----TEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                     + +  T   E V   +      E        + +      + +L+++ I 
Sbjct: 339 VCGIKAEPGANVLDVTNDTEAVVNALNDGILKENGLFFEWSSDQRPYINGAIDLVKQNI- 397

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I   +A+ + +         +     + + +  T  F  LFG   N+ ++A +   +G
Sbjct: 398 -IIGGVLAVCVLLVFLQSVSSTVIVAVAIPISVVGTFIFMNLFGRNLNVVSLAGISFAVG 456

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             V++ +VV + +    +  +   S      +   E  G  + +++      LP+     
Sbjct: 457 MLVDNAIVVLENI---DRHRSMGKSPYKAAYEGTREVWGAVLASTLTTVAVFLPVVFIEQ 513

Query: 790 -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G +    AI +   I+++   SI +   +    + +  K  
Sbjct: 514 EAGQLFKDIAIAVTCAIILSLFVSISVIPMLANLFFSFARKKG 556



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 74/224 (33%), Gaps = 15/224 (6%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                +          +E       E  PL+ I+++         +         +++ + 
Sbjct: 871  VTPPKDVPLQQAMEQIENDIIPKLEKGPLAGIKSSISGAADKLTQTRNALQWNFLLALVI 930

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL-------FGIEFNLTAVAAVLTLIG 731
              + +   F  + + L  +    + +    G   L            ++  +   + LIG
Sbjct: 931  TYLLMAALFGNFVYPL--LIMFTVPLAAAGGIIGLRLENLLVAPQPMDVLTMLGFIILIG 988

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
              VN+ +++  +   N++     +  +  I +S+   L     ++  +   +LP+ V   
Sbjct: 989  VVVNNAILIVHQSLNNIREL--GMDPQQAIRESVRTRLRPIFMSATTSLFGMLPLVVAPG 1046

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G  +       +  G+ ++   ++F+   +L F         R
Sbjct: 1047 PGSELYRGLGAVVLGGLAISTLFTVFVVPALLSFFIGMEKTPPR 1090


>gi|222087632|ref|YP_002546169.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
 gi|221725080|gb|ACM28236.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
          Length = 1039

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 81/643 (12%), Positives = 174/643 (27%), Gaps = 40/643 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+L  L   +       FP+     +              L   +
Sbjct: 10  RPVATSLLGVAVLLGGILGFLFLPVAPLPQVDFPTIQVTTQ--------------LPGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     ++ITL F   R  +  A  V   +   
Sbjct: 56  PDTMAALVTAPLERPLGQIPSLASMTSSSAFGISQITLQFDLGRDIDGAAQDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L          +      + +L+   +        E S         ++        
Sbjct: 116 GSTLPRTLPYPPTYSKVNPADTPILT-LALRSDSYSIRELSDFADTMMAQRLSEVTGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +   +  + D  RL         +       + +             +      
Sbjct: 175 VNIQGGVKPAIRIQADLPRLASYGLALEDLRTAITNASVAGAKGALDGTNQSFTLAANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D                          I                 + + L     G  
Sbjct: 235 IVDPAI--------------------YRSIIVAYRNNAPVQLKDVATVVEGLENTRVGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T+E        L+          +          S    
Sbjct: 275 YQGKPAVILDIMRQPGANVIQTVEGVLKQIPRLKQALPAGISIDIVNDRTETIRASIHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV++V+ + +       +A  ++ L++I T  ++   G +L   S+  + +
Sbjct: 335 QWTLVVSIGLVILVVLLFLRTVTATFIAGVALPLSLIATFGVMWFAGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           G G  VD  I++ E I     + ++   +   G      TI    ++ +   + L F   
Sbjct: 395 GTGFVVDDAIVMIENIARHIEEGENPMQAALKGAGEIGFTIISLTVSLVAVFIPLLFMTG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ +++++S   ++++   M   I+  +K K      L+      + + 
Sbjct: 455 IVGRMFREFALTLTIAVVVSAVISLTLTPMMCARIL--RKPKEHRRGFLAGADRFMEWLI 512

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             + R+  W V  S L  I ++  L      Y +  KG +           +    +   
Sbjct: 513 DGYRRSLVWAVDRSALMLIITMVTLAATVALYIVIPKGFLPPQDTGLITAVIETEPTTSF 572

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                  +       K+  V        + A    L      +
Sbjct: 573 EAMKQTQATVADRLRKDPDVSGVVSVIGTSASNLTLNTANLSL 615



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
                 A   L L +  T G     G   +  ++ A+    G+ V+D +V+ + +    +
Sbjct: 356 VTATFIAGVALPLSLIATFGVMWFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI---AR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                 +      K   E     +  +++     +P+    G V      FA+ +   +V
Sbjct: 413 HIEEGENPMQAALKGAGEIGFTIISLTVSLVAVFIPLLFMTGIVGRMFREFALTLTIAVV 472

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           V+A  S+ +   +   I     ++ R
Sbjct: 473 VSAVISLTLTPMMCARILRKPKEHRR 498



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 91/245 (37%), Gaps = 8/245 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D  V  +   +             E+   V + +      + +  +  V+    +I    
Sbjct: 777  DTQVPLNAFTTATFATAPLVISHDEQFPAVTISFDLAKGASLSDAVAEVQTAEQDIGMPD 836

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKT 707
            TIQ +     +     +      ++ + + + I + + ++       I + +    +   
Sbjct: 837  TIQRSYSGDAEEFASSLAGEPWLILAAVVTIYIVLGLLYESAVHPITILSTLPSAGVGAL 896

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    LFG + ++ A+  ++ L+G    + +++ D   +        +  R+ I K+   
Sbjct: 897  LALM-LFGQDLSIIALIGIVLLMGIVKKNAIMMIDFALE--AERKEGLPPREAILKASIL 953

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 + T++AA    LP+A+    G  +     I +  G+V++   +++    I L   
Sbjct: 954  RFRPIMMTTLAALFGALPLALAQGTGAELRIPLGITIIGGLVLSQLLTLYTTPVIYLAFE 1013

Query: 825  DWRAK 829
            + RA+
Sbjct: 1014 NLRAR 1018


>gi|170750706|ref|YP_001756966.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
 gi|170657228|gb|ACB26283.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 1156

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 63/516 (12%), Positives = 150/516 (29%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +   GL   L     +  +   P       +             +   
Sbjct: 9   RRPVATTLLTIGVLLAGLFAFL-----KLPVAPLPQIDFPVIL---------VQAQMAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +        +      +I L F  +R  +  A  V   +  
Sbjct: 55  SPDTMATTVAAPLERRLGAIADVNEMTSTNSLGSTRIVLLFGLNRDIDGAARDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    ++N          + ++    +        +           ++       
Sbjct: 115 ARADLPASLRQNPTYRKFNPADTPIII-LGMTSETLTRGQVYDSAATVVQQKLSQLPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   L  +  E DP+ L         +       N +                   
Sbjct: 174 NVDIGGSSLPAVRVELDPTALFNYGIGLEGIRAALASANANSP----------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G       AN   +      DI                 +   +    +  
Sbjct: 217 ---KGEIDAGDRRYQLYANDQGRKAADYRDIIVAYRNGAAVKLTDVGQVLDGVEDKRNLG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++            +   +   TI+        + A         +          S S 
Sbjct: 274 IVNGKPGVLLFVYKQPGANVVETIKAVKEALPQITASLPGGIDIKLTGDRSATIRASLSA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +  GLV++V++  +   +  L+   ++ ++++ T + + LLG +L + S+  ++
Sbjct: 334 TEETLLVAVGLVILVVYGFLRSWRATLIPAVAVPISIVGTFSAMYLLGYSLNILSLTALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +G G  VD  I+V E ++    + +    +  +G      T+   +++ +   + +   G
Sbjct: 394 IGTGFVVDDAIVVLENVQRHIEEGKPRLQAALIGAREVGFTVISMSLSLIAVFLPILLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   + F++T+ LSILIS+  +++    M   +
Sbjct: 454 GLVGRIFQEFSVTLSLSILISLVLSLTTTPMMCARL 489



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 88/266 (33%), Gaps = 8/266 (3%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                L+ +           I +       V L+ V   L+ ++               L
Sbjct: 224 DRRYQLYANDQGRKAADYRDIIVAYRNGAAVKLTDVGQVLDGVEDKRNLGIVNGKPGVLL 283

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +    + V   + ++    +IT  +P               R  +      ++++  
Sbjct: 284 FVYKQPGANVVETIKAVKEALPQITASLPGGIDIKLTGDRSATIRASLSATEETLLVAVG 343

Query: 679 AMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            +++ ++     W   L     + + I  T     L G   N+ ++ A++   G+ V+D 
Sbjct: 344 LVILVVYGFLRSWRATLIPAVAVPISIVGTFSAMYLLGYSLNILSLTALIIGTGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +                 E     +  S++     LP+ + GG V    
Sbjct: 404 IVVLENV---QRHIEEGKPRLQAALIGAREVGFTVISMSLSLIAVFLPILLMGGLVGRIF 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPIL 820
             F++ ++  I+++   S+    P++
Sbjct: 461 QEFSVTLSLSILISLVLSL-TTTPMM 485



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 67/156 (42%), Gaps = 6/156 (3%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ + +A+   + I ++ +   L  ++TL       +    + G +F + A+ AV  LIG
Sbjct: 978  ILAAILAVYAVLGILYESFVHPLTILSTLPSAGVGAVLALLVTGTDFTIIALIAVFLLIG 1037

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                + +++ D         T + +  D I ++        + T++AA +  +P+ +   
Sbjct: 1038 IVKKNAIMMID--VAIDAERTRAANPVDAIREACLLRFRPIMMTTLAAMLGAVPLILANG 1095

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  +     I +  G++V+   +++    + L + 
Sbjct: 1096 EGAELRRPLGIAIVGGLIVSQILTLYTTPVVYLTLD 1131


>gi|115351133|ref|YP_772972.1| acriflavin resistance protein [Burkholderia ambifaria AMMD]
 gi|115281121|gb|ABI86638.1| acriflavin resistance protein [Burkholderia ambifaria AMMD]
          Length = 1039

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/542 (12%), Positives = 151/542 (27%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAITSKTLPLTQVQDLTDTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKSGRPVMLTDVAKVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T++        L+          V          +    
Sbjct: 275 VNAEPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVQVVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ + G +L   S+  + +
Sbjct: 335 QFELLLAVVLVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  +   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGHTGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+               +I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHSPPPESHRFEARVHRVIDAVIA 514

Query: 540 IQ 541
             
Sbjct: 515 RY 516



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    + G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGHTGLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAIVSLTLVP 483



 Score = 41.6 bits (95), Expect = 0.51,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGAGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDSLARR 1019


>gi|187923570|ref|YP_001895212.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
 gi|187714764|gb|ACD15988.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
          Length = 1107

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/583 (11%), Positives = 155/583 (26%), Gaps = 38/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+         +  +   P                     L    
Sbjct: 10  RPVATTLLAIGIALAGIFA-----FTKLPVAPLPQVDFPTI---------SVQASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +               +IT+ F  +R  +  A  V   +   
Sbjct: 56  PNTVATSVASPLERHLGSIADVTEMTSQSSVGSTRITMQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N          + +L    +      A +            +   +   +
Sbjct: 116 RADLPASLRSNPTYHKVNPADAPILI-LALTSKTLTAGQLYDSAATVLQQSLSQVDGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P+ L         +       N +           R        
Sbjct: 175 VDVSGSANPAVRVELEPNALSHYGIGLEDVRAALAAANANSPKGSIEFGPNRVQIYTNDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                      D+                 +   +  + +  +
Sbjct: 235 ASKASQ--------------------YKDLVIAYRNGSAVKLSDVAEVVDSVEDLRNLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   TI+    +   L A                    S    
Sbjct: 275 FNGKRSVLVILYRQPGANIIDTIDRVTAMLPQLHASLPADVDIAPAADRSTTIRASLKDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +   LV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  + +
Sbjct: 335 ERTLVVAVALVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +  +G      T+   +I+ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIENGVPRMKAAFLGAREVGFTVLSISISLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ L+I +S+  ++++   M   ++R    +  +             + 
Sbjct: 455 IVGRLFREFALTLSLAIGVSLIVSLTLTPMMCSRLLREPHEQKEEGRFGRWLERGFASMQ 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             + R   W +    L     +  +  +   Y I  KG     
Sbjct: 515 RGYERTLGWALLHPRLIVTILLLTIGLNVWLYIIVPKGFFPQQ 557



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 49/136 (36%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   L     + + I  T G   L G   +  ++ A+    G+ V+D +VV + +
Sbjct: 351 LFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALTIATGFVVDDAIVVLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +     +           E     +  S++     LP+ + GG V      FA+ +
Sbjct: 411 ---SRHIENGVPRMKAAFLGAREVGFTVLSISISLVAVFLPILLMGGIVGRLFREFALTL 467

Query: 802 AFGIVVAASSSIFIAA 817
           +  I V+   S+ +  
Sbjct: 468 SLAIGVSLIVSLTLTP 483



 Score = 44.7 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 39/238 (16%), Positives = 95/238 (39%), Gaps = 7/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S   G          +     + +     V+ +   + +   + +I    TI  + 
Sbjct: 859  SAIASFGPGSTPLSVNHQSQFVASTISFNLPPGVSLSTATQAIYDTMAQIGMPGTIHGSF 918

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  ++ +    + ++ +  A+ I + + ++ +   L  ++TL       L    LF
Sbjct: 919  QGTAQAFQQSMSDQPILILAALAAVYIVLGMLYESYIHPLTILSTLPSAGVGALLALLLF 978

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              EF++ A+  V+ LIG    + +++ D   +  +     +S RD I ++        + 
Sbjct: 979  KTEFSIIALIGVILLIGIVKKNAIMMVDFAIEASRQ---GLSSRDAIHQACLLRFRPIMM 1035

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+ AA +  LP+A     G  +     I +  G++V+   +++    + L++   R +
Sbjct: 1036 TTFAALLGALPLAFGRGEGAELRAPLGIAIVGGLIVSQMLTLYTTPVVYLYMDRIRVR 1093


>gi|258622032|ref|ZP_05717060.1| multidrug resistance protein, putative [Vibrio mimicus VM573]
 gi|258585685|gb|EEW10406.1| multidrug resistance protein, putative [Vibrio mimicus VM573]
          Length = 1036

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/541 (12%), Positives = 162/541 (29%), Gaps = 39/541 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLVQGFITQPLEQAVAQADNIDYMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      + + S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSEDLASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  + + +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAALNMSASDVMSVLNANNYQSATGQAIGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+  + +     N         V ++      R         +           
Sbjct: 233 QVSTVEELENLVVKAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVV----------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 282 ---------AAINAAPSANPINIAKDVLEMLPELQKNMPSNIKMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA+T+  S+ +S   A+++   M   +++  +  +     +          
Sbjct: 453 GITGALFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKANETPNKFELKVHHLLDRMTAR 512

Query: 539 A 539
            
Sbjct: 513 Y 513



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 79/791 (9%), Positives = 210/791 (26%), Gaps = 36/791 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                     +EL + +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 229  SADTQVSTVEELENLV--VKAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 286

Query: 126  LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                   N+     E    +   + S   ++ +    +  +    E+I+  ++   I   
Sbjct: 287  APSANPINIAKDVLEMLPELQKNMPSNIKMNVLYDSTVAINESIHEVIKTIVEAALIVLV 346

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 347  VITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 404

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 D+    G     A      +   PV+ ++           +     G        
Sbjct: 405  VLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGALFKEFAL 464

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                +  V      +    +               L+   L  ++    ER + A +   
Sbjct: 465  TLAGSVFVSGIIALTLSPMMCSKMLKANETPNKFELKVHHLLDRMTARYERMLSAVMAHR 524

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
             +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 525  PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVVMLMGTGPSNANLDYLANTMDDVNQIL 584

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                 +            N+     +    S   +     +    T+        +    
Sbjct: 585  SDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQEEVTNRVGTLVKEIPGMAVTA-- 642

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             F        G  + +   I            A  I          +  +    F     
Sbjct: 643  -FQMPELPGAGSGLPIQFVITTPNSFESLFTIATDILTEVKSSPMFVYSDLDLNFDSATM 701

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
             I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 702  KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 761

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
            +       G +         + +   +  P  +   +  +  V    T +          
Sbjct: 762  NYYVRAADGKVIPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPSPGTAMGDAINWFENL 821

Query: 652  --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 822  ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L +   L   A      N+ +   ++TL+G      +++ +  ++        +S  D +
Sbjct: 882  LAVCGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
              +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 940  MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 999

Query: 819  ILLFIYDWRAK 829
            I  ++ +    
Sbjct: 1000 IYSYLAEKHKP 1010



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L  +     +             E            + +   + +  +  ++ + +
Sbjct: 251 NVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNM 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + I  ++ +A+ +L+ I +        L  I T+ L + 
Sbjct: 311 PSNIKMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  + G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   G++   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAIPVIAMTLTLGAVYAPIALMGGITGALFKEFALTLAGSVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +        +
Sbjct: 488 MLKANETPNK 497


>gi|50086391|ref|YP_047901.1| RND family multidrug transporter [Acinetobacter sp. ADP1]
 gi|49532367|emb|CAG70079.1| multidrug transport protein (RND family) [Acinetobacter sp. ADP1]
          Length = 1053

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/673 (10%), Positives = 176/673 (26%), Gaps = 31/673 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   I   GL+      +       +P+                   V    
Sbjct: 9   QRPVATTLVMIAIFLCGLVSWKFLPVASLPAVDYPTMQ--------------VTTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +     + ITL F  +   +    +V   +  
Sbjct: 55  SPEVIASTITAPLERQFGQMPGLSQMSSTSSNGASVITLQFNLNLGLDVAEQEVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            N+ L  D       +        +++   I        +    +  +   Q+       
Sbjct: 115 SNNLLPSDLLTPPTYSKVNPADKPIMT-IAISSKEMPITKLEDLVDTRLAQQLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +  + + + L  +  T   +       N ++            +     
Sbjct: 174 LISVSGGQRPAVRLQVNSTALANMGLTLEDVRTAVTAANVNQAKGTISGSVQSST----- 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  I G        ++                      +   +          +  
Sbjct: 229 -------IDGNDQLHTADDYKNLIIAYKNGAPIRMSDIASTIDSAENTRLAAWVGHRNHD 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             T           +   +          +   L++         +   +      S + 
Sbjct: 282 AATQSPAIIINVQRQPNANVIQVANQIKQILPQLQSSFPQSAKVEILSDSTRTIQASLND 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   LV++V+F+ +   +   +   ++ L+++ T A++ LLG ++   S+  + 
Sbjct: 342 VEFELLLAMVLVIVVVFLFLRSLRATFIPAVALPLSLVGTFAVMYLLGFSVDNLSLMALT 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  +D  I++ E I     + +S   +   G  +   TI    I+ +   + L F G
Sbjct: 402 IATGFVIDDAIVMIENISRYIEQGESPMQAALKGSEQIAFTIISLTISLIAVLIPLLFMG 461

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FAIT+ +SILIS F ++++   +   +++Y                    I
Sbjct: 462 DVVGRLFREFAITLAVSILISAFISLTLTPMLSARLLKYTPEAEQGRFYHVMGDFFDKLI 521

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                  R+      +   +  I       + Y    KG   +             ++  
Sbjct: 522 GWYATALRWVLARQGLFLVVT-IATFVFTVMLYVFIPKGFFPVQDTGQVIAITEADQTTS 580

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                            +  V               L M +  I             ++ 
Sbjct: 581 FQAMRVKQQQVANIILHDPAVDSISSFIGVDGSNSALNMGRILINLKDKSDRADIQTVIQ 640

Query: 659 PKISRELIRKGIV 671
               R    +G+ 
Sbjct: 641 DLQQRLNQAQGMT 653



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 87/273 (31%), Gaps = 7/273 (2%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S                N  I +K G  + +        S   + L +          
Sbjct: 224 VQSSTIDGNDQLHTADDYKNLIIAYKNGAPIRMSDIASTIDSAENTRLAAWVGHRNHDAA 283

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                  +   +    + +     ++ +  ++    P S          +  +  +    
Sbjct: 284 TQSPAIIINVQRQPNANVIQVANQIKQILPQLQSSFPQSAKVEILSDSTRTIQASLNDVE 343

Query: 671 VGVIISAIAMLIYIWIR-FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             ++++ + +++ +++              L L +  T     L G   +  ++ A+   
Sbjct: 344 FELLLAMVLVIVVVFLFLRSLRATFIPAVALPLSLVGTFAVMYLLGFSVDNLSLMALTIA 403

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            G+ ++D +V+ + +    +      S      K   +     +  +++    ++P+   
Sbjct: 404 TGFVIDDAIVMIENI---SRYIEQGESPMQAALKGSEQIAFTIISLTISLIAVLIPLLFM 460

Query: 790 G---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           G   G +   FAI +A  I+++A  S+ +   +
Sbjct: 461 GDVVGRLFREFAITLAVSILISAFISLTLTPML 493



 Score = 43.5 bits (100), Expect = 0.13,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 77/202 (38%), Gaps = 6/202 (2%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
             + ++ VK    ++    ++           +  +   +  ++ + + M I + + ++ +
Sbjct: 827  QQAVQAVKDTEQQLKMPGSLMTQFQGAALAFQASLSSTVWLIVAAIVVMYIILGVLYESF 886

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  ++TL       L    L   + N+ A+  ++ LIG    + +++ D        
Sbjct: 887  IHPLTILSTLPSAGIGALLALVLSHNDLNIIAIIGIVLLIGIVKKNAIMMIDFALD--AE 944

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                ++  + I ++        + T+MAA +  +P+ +    G  +     I M  G++V
Sbjct: 945  RHQGLTPIESIYQACLLRFRPILMTTMAALLGAVPLVIGSGIGSELRHPLGITMIGGLIV 1004

Query: 808  AASSSIFIAAPILLFIYDWRAK 829
            +   ++F    + L       K
Sbjct: 1005 SQLLTLFTTPVVYLAFNHLAQK 1026


>gi|223044266|ref|ZP_03614302.1| mmpl domain protein [Staphylococcus capitis SK14]
 gi|222442330|gb|EEE48439.1| mmpl domain protein [Staphylococcus capitis SK14]
          Length = 949

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/629 (13%), Positives = 199/629 (31%), Gaps = 58/629 (9%)

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
           H +   A+     H    +   D+   +   +   +       V        +  +N   
Sbjct: 64  HQDSQKASMKIVFHSNKKNGITDKDTKKDIEKALDNIKQDDDYVQNVSNPYDSHQVNDDK 123

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            +  A ++           +  +    L         +      GS +   G  + + G+
Sbjct: 124 DTAIATVNYVVNQTALQDSSKKIIDRELDDVKADHNLKIEQTQGGSMNSEVGGSSELVGI 183

Query: 373 V--LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLA 427
           V   I+L +         +   S  + +  ++ +++LL     +P+      +++G+ + 
Sbjct: 184 VTAFIILLITFGSLIAAGMPIVSALIGLGSSVGIIALLTFIFDIPNFTLTLAVMIGLAVG 243

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           +D ++ +  R +E  ++      ++      A S +  + +T +IA   L   G   +  
Sbjct: 244 IDYSLFILFRYKEVRKRGLEPVEAIATAVGTAGSAVIFAGVTVMIAVCGLSLVGIDFLAI 303

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
                 +S+L ++  A++++ A++    +  K+K                  +       
Sbjct: 304 MGFASAISVLFAVLAALTLLPALISVFHKRIKIKDKPEKNKDPKNHPWAKFVVGKPIIAI 363

Query: 548 WGVGISILFSICSICLL--------------------FTHGLNYGIDFKGGIQLGVLANR 587
               + ++ +   +  +                         N+G  + G I + V    
Sbjct: 364 IISLLILIAAALPVSGMRLGIPDDSLKANNTSAHKAYNLITDNFGAGYNGQIVMLVNTKD 423

Query: 588 -------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                    DL+ +R +++ +   D        + N    +   P D         +V  
Sbjct: 424 GGSKKDIQQDLNNIRDDIKDMDNVDKVASPKLNDNNHYALISIIPEDGPNAQSTNNLVYD 483

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG--------IVGVIISAIAMLIYIWIRFKWYF 692
                       +        S   I           +   +I  +A ++ +++      
Sbjct: 484 LRDYNKTAKEKYDFNTEISGQSVINIDMSEKLNEAIPVFAGVIVLLAFVLLVFVFRSILV 543

Query: 693 ALGAITTLILDITKTLGFF----------ALFGIEFNLT-----AVAAVLTLIGYSVNDK 737
            L A+   +L +  TLGF           +LFG+E          V  +  L G +++ +
Sbjct: 544 PLKAVLGFVLSLLATLGFTTLVMQDGFLGSLFGVENTGPLLAFLPVITIGLLFGLAIDYE 603

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           + +  R+ +    Y+ +      I   I E+    V  ++  F   +       S I S 
Sbjct: 604 LFLMTRVHEE---YSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFVFQEDSAIKSM 660

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I +AFG++  A        P L  ++  
Sbjct: 661 GISLAFGVLFDAFVVRMTLIPALTKLFGK 689


>gi|212636223|ref|YP_002312747.1| acriflavin resistance plasma membrane protein [Shewanella
           piezotolerans WP3]
 gi|212557707|gb|ACJ30161.1| Acriflavin resistance plasma membrane protein [Shewanella
           piezotolerans WP3]
          Length = 1031

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/637 (10%), Positives = 178/637 (27%), Gaps = 43/637 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  ++   G+         +  +   P+ +                   +   
Sbjct: 10  RPVVAIVLSILLTLFGIAA-----FFKLPVTEMPNMVSPIA---------SISTKYKGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +E  + +          +   + IT+ F       +    +   +   
Sbjct: 56  AVIIESQVTAKIEEQLTGINGVKDITSVSKSGASSITVEFEAGSNINDGVSDIRDAISRA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D  +  +          +    +   +     + +  + +   D+  I      
Sbjct: 116 KGALPDDADEPTVSKDDGTGEPALYINVSSSAMNR--TQLTDFVSQNIEDRFNIINGVSS 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S  +   +  + +P ++     TT  +       N                      
Sbjct: 174 VDVSGGLYKVMFIKLNPEKMAGHGVTTTDILSALRAENLESPA----------------- 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
              ++    I +   T             +          +      +            
Sbjct: 217 --GEIRNDSIVMPVRTERRYDAEKDFRYLVIGKSDSGVAIYLNQVAEVKLQAETENSSYR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +A  +              ++         +V+         S +  
Sbjct: 275 SNGVSSVSLAIVPQAAANPLALSGRIHAEVESIQQFLPKGTQLVVDYDATVFIDRSINEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T  +   LV++VL++ +   +  L+   ++ +++I T    S LG T+ L ++  ++L
Sbjct: 335 YKTLLMTCLLVILVLYLFIGQARATLIPAVTVPVSLIATFIFASYLGFTINLLTLLALIL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E I +  +K      +   G       +  +    ++  + +     
Sbjct: 395 AIGLVVDDAIVVVENIHQHIKKGSPPLLAAFEGTREVGFAVLATTFVLVMVFLPIAMMDG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF----FLIP 535
             G     FA+ + +S++ S   A+++   +   ++  K+  +I    + R         
Sbjct: 455 LIGRLFTEFAVMIAVSVMFSTLVALTLTPVLGAKLLSKKQQSNIINRYVERTLGILENRY 514

Query: 536 DCIAIQFMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             +    ++ RF     I +      + L          + +G I + V        + +
Sbjct: 515 KQLLTTSLKQRFIAPSIIIVCLVGSYLVLSQLSSQLVPQEDRGVILVKVNGAEATSFARM 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
             N++ ++   +        K+  ++     G +  Q
Sbjct: 575 SENMQKIETRLMVMLKEGSLKSLSIQTPISGGKNGDQ 611



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 74/241 (30%), Gaps = 6/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                 +     + +     K   + L+            L  +++     +P +   +  
Sbjct: 781  DTFCKVNRVASAQKLTHIGKRKSIVLRANLVAGATLGDALTSLEQAAITALPQNISFSYT 840

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                          I+ V+   +A L+       +      + T+   +   +    L G
Sbjct: 841  GESKDFIDNQSSTLIIFVLALLVAYLVMAAQFESFINPFVVMLTVPTGLFGAVLGIWLMG 900

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               N+ +   ++ LIG    + +++ + +    +L    + F D I    +  L   + T
Sbjct: 901  ESINIYSQIGIIMLIGMVTKNGILIVEFI---SQLRDKGMPFDDAIVDGASRRLRPIMMT 957

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +       LP+ +    G     S  I + FG+  +   ++ +   +   +         
Sbjct: 958  AFTTLAGSLPLLLSSGAGAESRVSVGIVVFFGMGFSTLVTLIVIPTMYKLLCRGTKSPGA 1017

Query: 833  I 833
            +
Sbjct: 1018 V 1018



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 6/159 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++   + +L+      +    L    T+ + +  T  F +  G   NL  + A++  IG 
Sbjct: 339 LMTCLLVILVLYLFIGQARATLIPAVTVPVSLIATFIFASYLGFTINLLTLLALILAIGL 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +             +   E     + T+    +  LP+A+  G 
Sbjct: 399 VVDDAIVVVENIH---QHIKKGSPPLLAAFEGTREVGFAVLATTFVLVMVFLPIAMMDGL 455

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +      FA+ +A  ++ +   ++ +   +   +   + 
Sbjct: 456 IGRLFTEFAVMIAVSVMFSTLVALTLTPVLGAKLLSKKQ 494


>gi|50954750|ref|YP_062038.1| preprotein translocase subunit SecD [Leifsonia xyli subsp. xyli
           str. CTCB07]
 gi|50951232|gb|AAT88933.1| SecD [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 555

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 112/500 (22%), Positives = 197/500 (39%), Gaps = 52/500 (10%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDE---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI 94
            +P     L LDL GG+ ++L              L      +R  +   G+    +   
Sbjct: 18  WLP----KLALDLEGGTQIILAPQVSNGAAVQQQQLDQAVSIIRQRIDASGVSEAQISTE 73

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
            ++  +     +  E   D+V    +     + V       V   + + +   +      
Sbjct: 74  GSRNIVVSLPGKPDEETLDRVKSSARLDFRPVLVAGGPTNEVVGADGKSTPAPTPAPDLL 133

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
               A  ++   +     ++    +  +   +    +       P               
Sbjct: 134 STPTATPKNGSDLAWVTPKLQAEFNAFECKSADHQDLSSAPTDQP--------------- 178

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH-----KPV 269
                               D  G    +   VE+ G ++  A+A     +      +  
Sbjct: 179 ----------------LITCDDGGTVKYLLGPVEVKGQNIKDASAGLVQSSQGVTTGQWA 222

Query: 270 VDISFDEMGARRFFEVTRDNIG-----KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
           V+I FD  G ++F +VT   +G        A+VLDG+V++AP    AI  GK QI+GNFT
Sbjct: 223 VNIVFDGTGTKQFADVTTRLVGLTGSQNQFAIVLDGKVISAPTTQSAITDGKPQITGNFT 282

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
             +A  LA  L+ G+LP    +  +  + A LGS  +  G  A + GL+L+ ++    Y 
Sbjct: 283 ESSAKALADQLKFGALPFSFKVQSQDTISATLGSAQLLAGLIAGLIGLLLVAIYTFFQYR 342

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLT----LPSIAGIVLGIGLAVDSNILVNERIRE 440
               V  FS+ +  +LT   +SLL         L  +AG+++ IG   DS I+  ERIR+
Sbjct: 343 LLAFVTIFSLVVAGVLTWLTISLLSWHYDYRLSLAGVAGLIVAIGFTADSFIVYFERIRD 402

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E R  +S+  +++ G+ RA  TI+ S  T L+A +VL+      VRGFA T+GL+ +I +
Sbjct: 403 ELRDGRSLESAVEAGWGRARRTIYASKATNLLAAIVLYILAAANVRGFAFTLGLTTIIDV 462

Query: 501 FTAISIVRAMMIFIIRYKKM 520
              +      +  + +    
Sbjct: 463 IVVLLFTHPTLQLLAKTAFF 482



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 61/151 (40%), Gaps = 10/151 (6%)

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN----LTAVAAVLTLIGYSVN 735
           + IY + +++   A   I +L++    T    +L    ++    L  VA ++  IG++ +
Sbjct: 333 VAIYTFFQYRLL-AFVTIFSLVVAGVLTWLTISLLSWHYDYRLSLAGVAGLIVAIGFTAD 391

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS-MAAFISVLPMAVWGGSVI 794
             +V ++R+R  ++      S    ++        R++Y S     ++ + + +   + +
Sbjct: 392 SFIVYFERIRDELRD---GRSLESAVEAGWGRA-RRTIYASKATNLLAAIVLYILAAANV 447

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             FA  +    ++     +    P L  +  
Sbjct: 448 RGFAFTLGLTTIIDVIVVLLFTHPTLQLLAK 478


>gi|220910471|ref|YP_002485782.1| preprotein translocase subunit SecD [Cyanothece sp. PCC 7425]
 gi|219867082|gb|ACL47421.1| protein-export membrane protein SecD [Cyanothece sp. PCC 7425]
          Length = 464

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 130/489 (26%), Positives = 219/489 (44%), Gaps = 63/489 (12%)

Query: 43  RISLGLDLRGGSHLVLEVDEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNK 97
            + LGLDL+GG+ L L+V   D         L+     + + +   G+    ++   ++K
Sbjct: 26  PVRLGLDLQGGAQLTLQVKPTDKVRTITPQVLEAVQRVVENRINGLGVSEALVQTAGEDK 85

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           + +        +     +    Q          ++ L +    +    V          +
Sbjct: 86  LLVQLPGVNDPQQAERVLQGTAQLDFRFQKPGTEQQLAIEQRLRAELQVKQAELQKSGDT 145

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            A+EQ+   +++    I                         + L +  G T  +    +
Sbjct: 146 AALEQNQAKLKESDQAI-------------------------AALYEKTGLTGDLLREAL 180

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
               +     + V    ++ G +   +    I+G          D     P+VD+ + E 
Sbjct: 181 ATPTAPGSSSWSVVVSFNAKGGELFADLTKRIAGTGRTLGVFLDDRLITSPIVDVRYAET 240

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
           G                                 I  G A+I+GNFT ++A  LA  L+ 
Sbjct: 241 G---------------------------------ITGGSAEITGNFTAQSANDLAVQLQG 267

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           G+LP+ L ++E R VGA LG DSI     A + GL+L+++FM V Y   G++AD ++ L 
Sbjct: 268 GALPVPLEVIENRTVGATLGQDSIRSSIYAGLGGLILVLVFMAVYYRLPGIIADLALTLY 327

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
            +LT A+  LLG TLTLP IAG +L IG+AVD+N+L+ ER REE R  +S++ S++ GF 
Sbjct: 328 ALLTYAIFVLLGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRSGKSLYRSVESGFY 387

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           RA+S+I DSN+T LIA   LF+ G G V+GFA+T+ + + +SMFTA++  R +++  +  
Sbjct: 388 RAFSSILDSNVTTLIACAALFWLGTGLVKGFALTLAIGVGVSMFTALTCSRTLLLTALGI 447

Query: 518 KKMKSIDIN 526
             ++     
Sbjct: 448 AGLRKPQFF 456



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 90/224 (40%), Gaps = 4/224 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   I          E           G+  AQ+     V+ +   +     +     V
Sbjct: 223 LDDRLITSPIVDVRYAETGITGGSAEITGNFTAQSANDLAVQLQGGALPVPLEVIENRTV 282

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ IR  I   +   I +L+++ + ++    + A   L L    T   F L G+ 
Sbjct: 283 GATLGQDSIRSSIYAGLGGLILVLVFMAVYYRLP-GIIADLALTLYALLTYAIFVLLGVT 341

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++   +  S    ++          + +++
Sbjct: 342 LTLPGIAGFILSIGMAVDANVLIFERTREELR---SGKSLYRSVESGFYRAFSSILDSNV 398

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
              I+   +   G  ++  FA+ +A G+ V+  +++  +  +LL
Sbjct: 399 TTLIACAALFWLGTGLVKGFALTLAIGVGVSMFTALTCSRTLLL 442


>gi|15606161|ref|NP_213538.1| AcrB/AcrD/AcrF family cation efflux protein [Aquifex aeolicus VF5]
 gi|2983346|gb|AAC06934.1| cation efflux (AcrB/AcrD/AcrF family) [Aquifex aeolicus VF5]
          Length = 1000

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/603 (11%), Positives = 164/603 (27%), Gaps = 44/603 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L      +GL       + +     FP       + +  D  G         +
Sbjct: 8   RPVTAFMLMLSFVFLGLYSLKLVPIDRLPDVEFP------VVRISADYPG--------AD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V+  +    +E  S +      +         + ++F   +  +    +V+  +Q  
Sbjct: 54  PYVVDTNVTRIIEEAVSTVSGIESIISRSYPGFASVVVTFTLDKDIDVATQEVSNAIQRA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +     +   +V        I++     D         +    +    ++        
Sbjct: 114 MRRFPKGVEPPTVVKVDTSVAPIMVLLLYSDTADYQ--RLTYYADKVIKRELEKLYGVGS 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L      S L     T   +       +          +           
Sbjct: 172 VSLGGFRDNVLWVRLKVSELYGYELTPLDVLREIDKNHQDIPAGNVYGKRREYILRLYGK 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   E+S +++                                   +            
Sbjct: 232 FKTPEELSNLYIKEN------------------------LRLGDVARVYFGEDEERSLAR 267

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +A+++    I+         R    P                S    
Sbjct: 268 FNGNRAVALLVFKQAKVNTVRVIDEIKSRMEFFRELLPPDIKLDYTFDASVYVKESIRAA 327

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I   L    +++ +   +  LV  F+I + ++ T+  L  LG +L   ++  + +
Sbjct: 328 FEEIIIGVFLTAFTVYLFLGNLRLTLVPVFAIPVTILGTIFFLYQLGYSLNTITLLALAV 387

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G+ +D  I+V E I     +    F +   G       +  S    ++  + + F   
Sbjct: 388 AVGIVIDDAIVVMESIHRRREEGLPPFEAGVKGTRVVMFALLASTSVLIVVFLPVVFLKG 447

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G  ++ FA+T+ ++I +S   AI+   +  + +I  +  ++  +    RF    D   
Sbjct: 448 VLGTFLKNFALTLIIAIGLSYLVAITFTPSATVRLITQRPRENFFMKLYKRFEGSFDKAL 507

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGID-FKGGIQLGVLANRPVDLSVVRSNL 598
              +  +F  + +S  F   S+ L       +     +G   + +          V+   
Sbjct: 508 RFSLDHKFIVLLLSFFFVGLSVYLFPKVKKEFVPHVDEGRFMVRMRMPVGTSFERVKEKA 567

Query: 599 ESL 601
           + +
Sbjct: 568 KEV 570



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/164 (20%), Positives = 73/164 (44%), Gaps = 8/164 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ + +S I + + +   F+        +  + L      GF  L     N+++   ++ 
Sbjct: 841  VLSLAMSLIGVYMILASLFESLKHPFTVLLMVPLSALGVFGFMYLTDTSLNVSSYFGIIL 900

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G  V D V+  +R+   ++L     + R+ I ++  E L   + T++    ++LP+A+
Sbjct: 901  LVGIIVRDAVLFIERI---IQLRKEGYAVREAILEARRERLRPILMTTITVVSALLPVAL 957

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                G       AI +  GI      S+F+  P+L  + +W+ K
Sbjct: 958  GLTAGSEQRKPLAIAVIGGIASGLPLSLFLL-PVLYELMEWKRK 1000



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 86/267 (32%), Gaps = 11/267 (4%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           YG          +     + L  V              +        L+  +    ++V 
Sbjct: 229 YGKFKTPEELSNLYIKENLRLGDVARVYFGEDEERSLARFNGNRAVALLVFKQAKVNTVR 288

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI--VGVIISAIAMLIYIWIRF 688
               ++   +   E++P     +         +E IR     + + +   A  +Y+    
Sbjct: 289 VIDEIKSRMEFFRELLPPDIKLDYTFDASVYVKESIRAAFEEIIIGVFLTAFTVYL-FLG 347

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  +  + + I  T+ F    G   N   + A+   +G  ++D +VV + +    
Sbjct: 348 NLRLTLVPVFAIPVTILGTIFFLYQLGYSLNTITLLALAVAVGIVIDDAIVVMESIH--- 404

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWG--GSVIGSFAIPMAFG 804
           +     +   +   K     +  ++  S +  I V    + + G  G+ + +FA+ +   
Sbjct: 405 RRREEGLPPFEAGVKG-TRVVMFALLASTSVLIVVFLPVVFLKGVLGTFLKNFALTLIIA 463

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           I ++   +I       + +   R +  
Sbjct: 464 IGLSYLVAITFTPSATVRLITQRPREN 490


>gi|22450142|emb|CAD44525.1| protein-export membrane protein SecD [Streptomyces galbus]
          Length = 561

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 108/517 (20%), Positives = 202/517 (39%), Gaps = 37/517 (7%)

Query: 41  KNRISLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN- 96
                LG+DL GG+ + L+             +    D +   +   G+    ++   N 
Sbjct: 6   HKTPRLGIDLAGGTSITLKAKADQGSATNKANMDTAVDIMNRRVNGLGVSEAEVQTQGND 65

Query: 97  KITLSFADSRFKENIADKV----TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN- 151
            I ++       +   ++V     L+ + V +     P       +              
Sbjct: 66  NIIVNIPKGTNSKEAQEQVGTTAKLYFRPVLASEPSGPAGKSPSPSASSGGGSSPKPGTS 125

Query: 152 -----------------IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
                                 + +  +++    +       +  +     +        
Sbjct: 126 PSSSASSKEKVSSPGSLSPTATATSQGRAVTDALKAGSTPSRAPPSGSATSASPSASSGS 185

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           G    ++L+                               +       +     + G  +
Sbjct: 186 GSDTAAKLQAQYAALDCTKPTDGATAGKNVQPGQPTCCGENDGAWYLYLLGPAPVDGTEV 245

Query: 255 NGATANFDPK-THKPVVDISFDEMGARRFFEVTRDNIGKPLAVV-----LDGRVLTAPVI 308
             A A FD        V ++F   GA++F ++T +   K          LDG+V+++P +
Sbjct: 246 KKAQAIFDTVGASGWQVQMTFTGKGAKKFADITGELAKKQQPQNEFGIVLDGQVVSSPFV 305

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            QAI  G+A+ISG+FT + A  LA ML  G+LP+         V A LG   ++ G  A 
Sbjct: 306 RQAITGGQAEISGSFTQDDAQSLANMLSYGALPLSFQEQSVTTVTAALGLAKLHAGLLAG 365

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGI 424
             GL L+V++++V Y    LVA  S+ ++ ILT  +++LLG      L LP++ G ++ I
Sbjct: 366 AIGLALVVIYLVVYYRGLSLVAMASLVVSAILTYVIMALLGPAIGFALNLPAVCGAIVAI 425

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFS-RAYSTIFDSNITALIATVVLFFFGGG 483
           G+  DS I+  ERIR+E R+ +++  +++  +  RA  TI  S+  + +A  VLF    G
Sbjct: 426 GITADSFIVYFERIRDEIREGRTLRPAVERAWPLRARRTILVSDFVSFLAAAVLFIVTVG 485

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            V+GFA T+GL+ ++ +       + +M  + R +  
Sbjct: 486 KVQGFAFTLGLTTVLHVVVVFFFTKPLMTLLARRRFF 522



 Score = 95.5 bits (235), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 77/208 (37%), Gaps = 9/208 (4%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G                  +      Q+   V   +    +  G++   I    ++IY+
Sbjct: 317 SGSFTQDDAQSLANMLSYGALPLSFQEQSVTTVTAALGLAKLHAGLLAGAIGLALVVIYL 376

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVV 740
            + ++   +L A+ +L++    T    AL G       NL AV   +  IG + +  +V 
Sbjct: 377 VVYYR-GLSLVAMASLVVSAILTYVIMALLGPAIGFALNLPAVCGAIVAIGITADSFIVY 435

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS-MAAFISVLPMAVWGGSVIGSFAI 799
           ++R+R  ++      + R  ++++      R++  S   +F++   + +     +  FA 
Sbjct: 436 FERIRDEIRE---GRTLRPAVERAWPLRARRTILVSDFVSFLAAAVLFIVTVGKVQGFAF 492

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    V+      F   P++  +   R
Sbjct: 493 TLGLTTVLHVVVVFFFTKPLMTLLARRR 520


>gi|154508891|ref|ZP_02044533.1| hypothetical protein ACTODO_01402 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798525|gb|EDN80945.1| hypothetical protein ACTODO_01402 [Actinomyces odontolyticus ATCC
           17982]
          Length = 651

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 116/530 (21%), Positives = 210/530 (39%), Gaps = 56/530 (10%)

Query: 46  LGLDLRGGSHLVLEVDED-----DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKIT 99
           L LDL+GG+ L+L                +      +R+ +   G+    +     + I 
Sbjct: 33  LALDLKGGTQLILTPTPTSEGQRAITEEDITQAIAIIRNRIDASGVSESEISSMGSSNIM 92

Query: 100 LSFADSRFKENIADKVTL----------FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
           +S       +   D +             +      L    +  +    +  +      +
Sbjct: 93  VSIP-GTPSQEQLDLIRSSSQMNFRPVLRVGPAQGILQNQQQPQVDTPQSGAQSGAQSGE 151

Query: 150 NNIDQVISHAIEQSMEIIRQRID------QIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +  Q    + EQS      +         +  + +          ++       P    
Sbjct: 152 QSGAQSGGQSGEQSGAGAADKAQSGVQSTALDEATARGAADADGDGVLSDTPATTPENAS 211

Query: 204 QLLGTTAKMS-------FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLN- 255
            L   T ++                  +G         D  G    +   V + G  L  
Sbjct: 212 DLAWVTEQVMYDFLTLDCSASADVKRVEGAADKPYAACDESGQVKYILGPVAVPGSDLEA 271

Query: 256 ----GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG-----------------KPL 294
                AT      T + +V + F+  GA +F E +    G                    
Sbjct: 272 ASAAIATNGTGQSTGQWIVSLRFNHEGAEKFKETSTILYGYHDSDPQGSSYRGSPDRNSF 331

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           AVVLDG V+TAP +   I +G+AQISGNFT ++A  LA  L+ GSLP+   +  E+ + A
Sbjct: 332 AVVLDGTVITAPSMQAIITNGEAQISGNFTAQSARALANQLQFGSLPLNFEVESEQQISA 391

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL-- 412
            +G+D +  G  A + G +L++L++I  Y    +++  S+ +  I+T  +++LL   +  
Sbjct: 392 TIGTDHLTVGLWAALIGFLLVILYLIWQYRGLAIISAGSLVVAAIITYLVITLLSWAMGY 451

Query: 413 --TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
             +L  +AG+++ IG+  DS I+  ER+R+E R  + +  +++ G+ RA  TI  S+   
Sbjct: 452 RLSLAGVAGLIMAIGVTTDSFIVYFERVRDEVRDGRPLRAAVEEGWDRAKRTILVSDAVN 511

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           L+A  VL+    G V+GFA T+G++ +I +         MM  +IR +  
Sbjct: 512 LVAAAVLYLLAVGGVQGFAFTLGITTIIDIAVIFLFTHPMMELLIRTRFF 561



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 77/206 (37%), Gaps = 6/206 (2%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G+  AQ+      + +   +     +++ + +   I  + +  G+   +I  + +++Y+
Sbjct: 357 SGNFTAQSARALANQLQFGSLPLNFEVESEQQISATIGTDHLTVGLWAALIGFLLVILYL 416

Query: 685 WIRFKWYFALGA---ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
             +++    + A   +   I+            G   +L  VA ++  IG + +  +V +
Sbjct: 417 IWQYRGLAIISAGSLVVAAIITYLVITLLSWAMGYRLSLAGVAGLIMAIGVTTDSFIVYF 476

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++        R  +++  +      + +     ++   + +     +  FA  +
Sbjct: 477 ERVRDEVRD---GRPLRAAVEEGWDRAKRTILVSDAVNLVAAAVLYLLAVGGVQGFAFTL 533

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWR 827
               ++  +       P++  +   R
Sbjct: 534 GITTIIDIAVIFLFTHPMMELLIRTR 559


>gi|332829118|gb|EGK01782.1| hypothetical protein HMPREF9455_01930 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1057

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/540 (11%), Positives = 144/540 (26%), Gaps = 35/540 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    ++++P   P                      
Sbjct: 8   RPVLSTVISVIIVVLGII-----GLATLPVEQYPDIAPPTVQ---------VSATYPGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   + +  +E  + ++       S       I + F      +  A  V       
Sbjct: 54  ADVVMNSVVVPLEEQINGVEGMTYMTSSATSGSATIRVYFKQGVNPDIAAVNVQNLAARA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N  L  +  +  +    ++  +++    +                   + QI        
Sbjct: 114 NPLLPEEVTQLGVTVAKQQNSTLLGLTISTSNPDYDGEFLQNYANINILPQIKRVYGVGN 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +     P  +     +  ++S      N        G    +        
Sbjct: 174 ASVFGARDYAMRVWLKPDVMAAYKISVQEVSAALADQNIEAAPGELGQNSDQ-------- 225

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                +T     +I                +I            
Sbjct: 226 ---------SFQYTMRYTGKLRTEDQFGNIILRSQDGHILRLKDIADIKLGSLNYSVISQ 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    + +  A  +    I     +                   +      S    
Sbjct: 277 TDRNESVFIMINQTAGSNAQEVINNVKAVLNDAEKLLPSGVKFNYMMDSSEFLDASIEKV 336

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV IV+F+ +   +  ++   ++ + +I T   L + G ++ L ++  +VL
Sbjct: 337 IHTLLEAFVLVFIVVFVFLQDFRSTIIPAVAVPVAIIGTFFFLQVFGFSINLLTLFALVL 396

Query: 423 GIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E +  +     +    +           I    +      + + F G
Sbjct: 397 AIGIVVDDAIVVVEAVHAQLDAGEKDPKKATMTAMKEIAPAIVSITLVMSAVFIPVSFIG 456

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G +    + F +T+ ++ILIS   A+++  A+    ++    +      L +F+   +  
Sbjct: 457 GTSGIFFKQFGLTLAIAILISAVNALTLSPALCALFLKAHDEEHQKKGFLQKFYYYFNIT 516



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/228 (12%), Positives = 75/228 (32%), Gaps = 14/228 (6%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
             +  + +     D  +   VL ++++   +          E  G              +I
Sbjct: 818  TSIDMTIIPNMIDGKSTGDVLNLIEEMSQDKSIFPDGYTYEFGGMTREEANA-GSQTVLI 876

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVL 727
                 + +Y+    +   +   L  + +L + +     F  +FG    I  N+    +++
Sbjct: 877  FGICIIFVYLLLCALYESYIIPLAVLFSLPVGLAGVFIFLMIFGVSQGIVNNIYVQISMI 936

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG    + +++ +     ++     +S  +         L   + TS A    + P+ 
Sbjct: 937  MLIGLLAKNAILIVE---YALQRRQQGMSIIEAAVNGAVARLRPILMTSFAFIAGLFPLF 993

Query: 788  V-WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +  G   I   S  I    G+ +     + +   + +     + K ++
Sbjct: 994  IASGAGAIGNRSIGISAIGGMFIGTMIGVLVIPSLYIIFQSLQDKVSK 1041



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 62/148 (41%), Gaps = 6/148 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   +     + + I  T  F  +FG   NL  + A++  IG  V+D +VV + +   +
Sbjct: 357 DFRSTIIPAVAVPVAIIGTFFFLQVFGFSINLLTLFALVLAIGIVVDDAIVVVEAVHAQL 416

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGI 805
                    +     ++ E     V  ++      +P+  + G S I    F + +A  I
Sbjct: 417 DAGEK--DPKKATMTAMKEIAPAIVSITLVMSAVFIPVSFIGGTSGIFFKQFGLTLAIAI 474

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNAR 832
           +++A +++ ++  +  LF+     ++ +
Sbjct: 475 LISAVNALTLSPALCALFLKAHDEEHQK 502


>gi|329954104|ref|ZP_08295199.1| RND transporter, HAE1 family [Bacteroides clarus YIT 12056]
 gi|328528081|gb|EGF55061.1| RND transporter, HAE1 family [Bacteroides clarus YIT 12056]
          Length = 1138

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/521 (12%), Positives = 145/521 (27%), Gaps = 44/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGVI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +     N    I++ F      +  A  V  
Sbjct: 51  TGANAQTVLNSVIAPLEDQINGVENMMYMTSNASNNGSADISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +++     ++                I ++   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLMVFSIYDEKDQYDIEFLENYANINLIPEVKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q       ++      N       FG    R + 
Sbjct: 171 NGVGDATVLG-QDYSMRIWLKPDVMAQYKLIPNDIAGALAEQNIEAAPGQFGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                +I       
Sbjct: 227 SFQYTIRYKGRL-------------QQPEEFENIVIKALENGEVLRMKDIADIELGRLSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     +               + +        
Sbjct: 274 NFNNKVNGHKAVSCIVYQMAGTNATQTISDLEKVLDEASETLPSGLKINIAQSANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVIKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   V 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARTASIDAMSELGGAIISITLVMMSVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F G   G   R F +TM ++I  S   A+++  A+    
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGFSALNALTLSPALCAIF 494



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 84/310 (27%), Gaps = 28/310 (9%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                       +         ++     +   + +    + V     +       +++ +
Sbjct: 816  MQGYFGGLYASNFNSFGKMYRVMIQAEPDATKNLESLSSIKVRNGNEMAPITQFVSIKKV 875

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               DI  +        ++        S      +  V K+             E+ G   
Sbjct: 876  YGPDIISRFNLYTSMKVMVAPASGYTSGQALAAIAEVAKENLPTG-----FAYELGGMAR 930

Query: 662  SRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALF 714
                      G+I     + +Y+ +      +   L  + +    L+       G  +L 
Sbjct: 931  EEAETSGSTTGLIFILCFVFVYLLLSAQYESYILPLSVLLSVPFGLLGSFLFVSGIGSLG 990

Query: 715  GIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             I      +           A++ L+G    + +++ +     +      +S        
Sbjct: 991  NIPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFA---LDRRRMGMSITWAAVLG 1047

Query: 765  INETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + TS+A  + +LP+      G +   +       G+++     IFI   + +
Sbjct: 1048 AAARLRPILMTSLAMIVGLLPLMFASGAGANGNRTLGTSAIGGMLIGMILQIFIVPALFV 1107

Query: 822  FIYDWRAKNA 831
                 + K  
Sbjct: 1108 AFQYLQEKVK 1117



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 77/207 (37%), Gaps = 8/207 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                      +VL+   + +   + ++  Q+          E+I+  I   I+  I + 
Sbjct: 295 TNATQTISDLEKVLDEASETLPSGLKINIAQSANDFLFASIHEVIKTLIEAFILVFIVVY 354

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++         L     + + +  T     L G   NL  ++A++  I   V+D +VV 
Sbjct: 355 IFLQ---DMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTLSAMVLAIAIVVDDAIVVV 411

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFA 798
           + +   +       S R     +++E  G  +  ++      +P++  GG+       F 
Sbjct: 412 EGVHAKLDQGYK--SARTASIDAMSELGGAIISITLVMMSVFVPVSFMGGTAGTFYRQFG 469

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYD 825
           + MA  I  +A +++ ++  +      
Sbjct: 470 LTMAIAIGFSALNALTLSPALCAIFLK 496


>gi|269956462|ref|YP_003326251.1| protein-export membrane protein SecD [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269305143|gb|ACZ30693.1| protein-export membrane protein SecD [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 635

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 121/543 (22%), Positives = 217/543 (39%), Gaps = 51/543 (9%)

Query: 2   RNNPWL---VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           R +  +   V+   +   + L   +            P         L LDL GG+ ++L
Sbjct: 9   RRSRPVRTLVVFAVLTMLLPLAGLVAGTFIDGRSAENPDGAGFAP-GLALDLEGGTQIIL 67

Query: 59  EV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADK 114
                D     +  +    + +R  +   G+    +     + I +       +  IA  
Sbjct: 68  TPTATDGSQITDATVSEAINVIRQRIDANGVTEAEITSQGGQNIVVGIPGKPDEATIALV 127

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
                      L +D    L    +E            D     +    +E         
Sbjct: 128 SQSAQMRFRPVLTIDYGFPLPEDESEAADDETADDATADDAAEESEAPVIE--------- 178

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                +     +  I  Q       +    +           V                 
Sbjct: 179 ---NPSDLAQITDEIQQQFDDLDCTAEGALVGRGGDDPDAPLV---------------TC 220

Query: 235 DSDGNQYLVEDKVEISGIHLNG-----ATANFDPKTHKPVVDISFDEMGARRF------- 282
            +DG    +   VE+ G H+            +  T++  V ++ D +GA +F       
Sbjct: 221 STDGLFKYILGPVEVEGTHIKQATSGLMPGPNNTVTNEWGVSLTLDSVGAEQFAVTSQRL 280

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
           ++    N     A+VLDG V++AP IN  I  G+AQISG+FT E+A  LA  L  G+LPI
Sbjct: 281 YDFGDGNPQNQFAIVLDGNVVSAPGINTPIRDGRAQISGSFTRESAATLANQLSFGALPI 340

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
           +  +  ++ + A LGS+ + KG  A + GLVL+V++ +  Y   GL+   S+ +  ++T 
Sbjct: 341 QFEVQSQQEISATLGSEQLQKGIIAGLIGLVLVVVYSLFQYRTLGLLTVASLVVAGVITY 400

Query: 403 ALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR 458
             ++LL   +    +LP +AG+++ IG   DS I+  ERIR+E R  +++  ++  G+ R
Sbjct: 401 VTIALLSWGMGYRLSLPGVAGLIVAIGFTADSFIVYFERIRDELRNGRTLHFAVQHGWQR 460

Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           A  TI+ +    LI+ V+L+F   G V+GFA T+GL+ +I +   +     +M  + + +
Sbjct: 461 ARRTIYAAKAVNLISAVILYFLAVGGVQGFAFTLGLTTVIDVMVVVWFTHPVMELLAKVR 520

Query: 519 KMK 521
             +
Sbjct: 521 FFR 523



 Score =  100 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 106/287 (36%), Gaps = 11/287 (3%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
                 S L    +  +    G++  +D  G  Q  V + R  D        +   + D 
Sbjct: 239 HIKQATSGLMPGPNNTVTNEWGVSLTLDSVGAEQFAVTSQRLYDFGDGNPQNQFAIVLDG 298

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK-KITEIVPLSTIQNTEIVGPKISREL 665
           +  +  G    +   + Q   S  +     +  +     +     +Q+ + +   +  E 
Sbjct: 299 NVVSAPGINTPIRDGRAQISGSFTRESAATLANQLSFGALPIQFEVQSQQEISATLGSEQ 358

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLT 721
           ++KGI+  +I  + +++Y   +++    L  + +L++    T    AL     G   +L 
Sbjct: 359 LQKGIIAGLIGLVLVVVYSLFQYR-TLGLLTVASLVVAGVITYVTIALLSWGMGYRLSLP 417

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS-MAAF 780
            VA ++  IG++ +  +V ++R+R  ++      +    +         R++Y +     
Sbjct: 418 GVAGLIVAIGFTADSFIVYFERIRDELR---NGRTLHFAVQHGWQRA-RRTIYAAKAVNL 473

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           IS + +       +  FA  +    V+     ++   P++  +   R
Sbjct: 474 ISAVILYFLAVGGVQGFAFTLGLTTVIDVMVVVWFTHPVMELLAKVR 520


>gi|119947078|ref|YP_944758.1| acriflavin resistance protein [Psychromonas ingrahamii 37]
 gi|119865682|gb|ABM05159.1| acriflavin resistance protein [Psychromonas ingrahamii 37]
          Length = 1028

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/545 (13%), Positives = 164/545 (30%), Gaps = 27/545 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                     D + GF+    ++  +                +KI++    +        
Sbjct: 47  VSTSYYGANADLIQGFITQPIEQAIAQANNIDFITSQSYMGNSKISVFMNLNTDPSGAVA 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +   +  V S+L  + +   +  +T    S++    + +Q+ S   E +  + R    Q
Sbjct: 107 DILAKVNSVRSQLPSEAEDPSIDMSTGSSTSVIYISFSSEQLNSS--EITDYLERIIKPQ 164

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       +          L    DP R+     TTA +       N           + 
Sbjct: 165 LFSINGVAKVNLYGGTKFALRIWLDPERMAGFGLTTADVVQILQANNIQSAAGQTNSYYT 224

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +      VE   E+  + +                         +         +   
Sbjct: 225 LLNSNVGTQVETGAELENLVIAT-------------------SGDGKVIRLQDIARVSLE 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            +  +   +                 +          +   L   +       V   +  
Sbjct: 266 KSHDVYRAMANGEDAVVVAIDAAPTANPLDITAGVRDMLPALAKNNPSSINMKVLYDSTI 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A   S S    T A    +VL+V+ + +   +  ++   +I L++I  + ++ L G TL 
Sbjct: 326 AIEESISEVIKTIAEAGFIVLLVMILFLGSWRAVIIPIITIPLSLIGVVVVMQLFGFTLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  +VL IGL VD  I+V E I    +  +  F +  +G       +    IT    
Sbjct: 386 LMTLLAMVLAIGLVVDDAIVVVENIDRHIKAGEDPFRAAILGTREIAVPVISMTITLAAV 445

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
              +   G   G     FA+T+  ++ +S   A+++   M   +++  +  +     +  
Sbjct: 446 YAPIALMGGITGSLFTEFALTLAGAVFVSGIVALTLSPMMCSKLLKNNQKPNRFERNVES 505

Query: 531 F---FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                       +  +  R   V +       S+  LF    +     +    L V+A  
Sbjct: 506 VLSSITRGYGRLLDKLMTRRPAVILYACLVFISLPFLFNSIPSELAPKEDKGALMVMAKA 565

Query: 588 PVDLS 592
           P + +
Sbjct: 566 PANAN 570



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 81/250 (32%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + + L  +                   +   +        + +  T  +  +   + +  
Sbjct: 252 KVIRLQDIARVSLEKSHDVYRAMANGEDAVVVAIDAAPTANPLDITAGVRDMLPALAKNN 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
           P S              E I + I  +     I +L+ I     W   +  I T+ L + 
Sbjct: 312 PSSINMKVLYDSTIAIEESISEVIKTIAEAGFIVLLVMILFLGSWRAVIIPIITIPLSLI 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +    LFG   NL  + A++  IG  V+D +VV + +    +                
Sbjct: 372 GVVVVMQLFGFTLNLMTLLAMVLAIGLVVDDAIVVVENI---DRHIKAGEDPFRAAILGT 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 429 REIAVPVISMTITLAAVYAPIALMGGITGSLFTEFALTLAGAVFVSGIVALTLSPMMCSK 488

Query: 823 IYDWRAKNAR 832
           +     K  R
Sbjct: 489 LLKNNQKPNR 498



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 61/162 (37%), Gaps = 6/162 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +F+     L  + T+ L I+  L   A      N+     ++TL+G 
Sbjct: 854  VLAILIIFLVLASQFESIRDPLVILLTVPLAISGALVALAWGAATMNIYTQVGLITLVGL 913

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++ +  ++        ++  D + K+    L   + T+ A    ++P+      
Sbjct: 914  ITKHGILIAEVAKEE--QLHHGLNRIDAVKKAATVRLRPILMTTAAMVAGLIPLLFATGA 971

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G        I +  G+ +    ++FI   I  FI        
Sbjct: 972  GAVSRFGIGIVIVAGLSIGTLFTLFILPVIYSFIASKHQPRQ 1013


>gi|330953401|gb|EGH53661.1| acriflavin resistance protein [Pseudomonas syringae Cit 7]
          Length = 1035

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/588 (12%), Positives = 168/588 (28%), Gaps = 44/588 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+L   I  +G +           +   P+      +             L    
Sbjct: 10  RPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +  Q   +I L F  +R     A +V   +   
Sbjct: 56  PEVMASTVATPLERSLGSIAGVNTMTSNSSQGTTRIILQFDLNRDINGAAREVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    +            + ++   ++   +    +            +       +
Sbjct: 116 RNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P  L Q   +   +                         G    
Sbjct: 175 VQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAIT--------------------GTNVR 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                     H     AN   +T +    +                 +   +    +   
Sbjct: 215 RPKGFVEDDQHNWQVQANDQLETAEDYAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    + + +A  +   T+         LRA         +          +    
Sbjct: 275 YNNDRAVLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHEA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++L
Sbjct: 335 EMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALIL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             GL VD  I+V E I            +  +G      T+   N++ +   + + F GG
Sbjct: 395 ATGLVVDDAIVVLENISRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGG 454

Query: 483 ---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRFFL 533
                 R F+IT+ ++I++S+  ++++   +    ++ ++       +        R   
Sbjct: 455 LVESLFREFSITLSVAIIVSLIVSLTLTPMLCARWLKPREAHGENAFQRWSERVNDRMVA 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             D      MR R   +   ++  + +I L       +      G  +
Sbjct: 515 GYDRSLGWVMRHRRLTLLSLLVTVVVNIALYVVVPKTFLPQQDTGQLM 562



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVAI 471

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           +V+   S+ +   +       R  + 
Sbjct: 472 IVSLIVSLTLTPMLCARWLKPREAHG 497



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 98/262 (37%), Gaps = 9/262 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  QDPVTLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   S I +             +     ++ + +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLEREQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++ ++ I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    + L++   R +  +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHRYNK 1021


>gi|194367383|ref|YP_002029993.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
 gi|194350187|gb|ACF53310.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
          Length = 1044

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/533 (10%), Positives = 138/533 (25%), Gaps = 38/533 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+L           +   P                    +     
Sbjct: 10  RPVATTLLMVALLLSGVLA-----YRLLPVAALPQVDYPIIQ---------ITTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            +     +    +     +        +     + ITL F            V   +   
Sbjct: 56  PELTTRTITAPLERQLGQIPGLKRLSSTSSGGASVITLQFGLEVSLGVAEQDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     +        + +L+   +        +    +  +   ++        
Sbjct: 116 GSFLPGDLPVPPVYRKVNPADTPILT-LAVTSQGLSLPQVHDLVDTRIAQRLAQLPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P+ L         +       N +     F              
Sbjct: 175 VSLAGGQRPAVRIQVNPAALAANNLGMDHIRTAIAAANVNLPKGSFDGPI---------- 224

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                           AN   ++      +                 I            
Sbjct: 225 ----------RAVMLDANDQMRSVDEYRALILAWRDGAPLRLGDVATITDGAENRQLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    +E    L   L+A         V      +   S    
Sbjct: 275 SGTTPAVLVNIQRQPGANVIAVVEQVRTLLPQLQATLPAGVQMNVLSDRTESIRASVRGV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V ++ +      L+   ++ L++I T A++ L G +L   ++  + +
Sbjct: 335 QKELVLAIGLVVLVTWVFLRNLPATLIPSVAVPLSLIGTFAVMLLAGYSLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +S   +   G +    T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENIARHLEEGESPREAALKGAAEIGFTLVSLTVSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
             G     FA+T+ ++I IS+  ++++   +    ++     S     L+   
Sbjct: 455 LVGALFHEFAVTLAVAIGISLLVSLTLTPMLCARFLKPHAKGSEPHGDLTPAQ 507



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 60/151 (39%), Gaps = 7/151 (4%)

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++++   +++  W+  +     L     + L +  T     L G   N   + A+    G
Sbjct: 338 LVLAIGLVVLVTWVFLRNLPATLIPSVAVPLSLIGTFAVMLLAGYSLNNLTLMALTIATG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
           + V+D +V+ + +    +      S R+   K   E     V  +++    ++P+     
Sbjct: 398 FVVDDAIVMLENI---ARHLEEGESPREAALKGAAEIGFTLVSLTVSLIAVLIPLLFMAD 454

Query: 791 --GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             G++   FA+ +A  I ++   S+ +   +
Sbjct: 455 LVGALFHEFAVTLAVAIGISLLVSLTLTPML 485



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 64/161 (39%), Gaps = 6/161 (3%)

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             + + M I + + ++ +   +  ++TL       L    + G   +L AV  ++ LIG  
Sbjct: 875  AAVVVMYIVLGVLYESFIHPITILSTLPSATVGALAALWVSGRSLDLIAVIGIVLLIGLV 934

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ D         T  +S R+ I ++        + T++AA    +P+ +    G
Sbjct: 935  KKNAIMMIDFALD--AQRTRGMSPREAIHQAALLRFRPILMTTLAALFGAVPLMLASGSG 992

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +       M  G++V+   ++F    I L     +   A
Sbjct: 993  AELRQPLGWVMVGGLLVSQVLTLFTTPVIYLAFDRLQRGRA 1033


>gi|91782914|ref|YP_558120.1| multidrug efflux system protein [Burkholderia xenovorans LB400]
 gi|91686868|gb|ABE30068.1| RND multidrug efflux pump, AcrB/AcrD/AcrF family [Burkholderia
           xenovorans LB400]
          Length = 1040

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/621 (12%), Positives = 173/621 (27%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I  +GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLVGLVALRFLPLSALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PDVMTSSVTAPLERQFGQMPSLNQMSSQSSAGSSIITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +++   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPIIT-LAITSKTLPLTQVQDLADTRLAQKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGQRPAVRIQANPRALAAYGLNLDDLRTTISNLNVNTPKGNF------DGPTRNYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I +       G  
Sbjct: 229 INANDQLTDAD--------------AYKSAVVAYKNGRAVMLTDVATIVQGAENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    +++   L   L+          +          S    
Sbjct: 275 VDGTPAIILNVQRQPGANVIQVVDSIKKLLPQLQQALPAALDVEIVTDRTTTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELAMSVVLVVMVMYLFLANIYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I       +S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEDGESPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   I 
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPHENHRFEAKAHRAIDWVIA 514

Query: 539 ------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +   +  +  ++     + +   G IQ    A + V  +
Sbjct: 515 RYAVALTWVLNRQRSTLVVALLTLVLTGLLYVYIPKGFFPVQDTGVIQAITQAPQSVSYA 574

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    + L    +   + + 
Sbjct: 575 SMAERQQELAAQILKNPDVES 595



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    L G   +  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANIYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEDGESPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAVVSLTLVP 483


>gi|332296877|ref|YP_004438799.1| acriflavin resistance protein [Treponema brennaborense DSM 12168]
 gi|332179980|gb|AEE15668.1| acriflavin resistance protein [Treponema brennaborense DSM 12168]
          Length = 1105

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/505 (11%), Positives = 141/505 (27%), Gaps = 30/505 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+ ++  +G+       L        P                          
Sbjct: 10  KPTTVLILFVILTALGIYSTTKLPLDLLPDMELPYIAISTS--------------YTNAG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   S +              + + L        +   +++   L  V
Sbjct: 56  PEEVERSVSRPIESSISSVTGLKNMQSLSSTGSSLVLLELNYGTNLDAATNEIRDKLDLV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D    L++      + I+    + ++      E  +        ++   +    
Sbjct: 116 KGYLPDDTGTPLILKMDPSMMPIMQYVVSGNRTPE---ELRLYAEDIIQPRLEQIDGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  +    RL     T  +++      N    G          S      
Sbjct: 173 ASISGGREKAIVVDIPRDRLEAYSLTITQIAQMIGAQNVQGSGGSISEGDKTYSITTSGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +I    +   ++     T +    +                ++ +    V     
Sbjct: 233 YTSLDDIRNTVIAYKSSPVSGGTPQVRKILLR-----------DIADVYEGYKDVSSLAY 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            ++  +   T  +       +            E         S    
Sbjct: 282 MNGTPCVIVSIQKQSGKNSVQTANSVRKQITSIEKLLPADVKLSEEMNTTDIIETSIKNI 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L +IVLF+ +   K  ++   +I +++I+TL L+   G +L + ++AG+ L
Sbjct: 342 VSSALSGALLAIIVLFIFLRSIKSTIIIGITIPVSLIITLGLMKFTGFSLNMMTLAGLSL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           G+G+ VD++I++ E I     K      +  +G       I  S +T +   + L  +  
Sbjct: 402 GVGMLVDNSIVILENIYSYRAKGAKPSVAAVLGSQEMIMAITASTLTTICVFLPLVMYSN 461

Query: 483 GAVRGFAITMGLSILISMFTAISIV 507
                  I     +  ++  ++   
Sbjct: 462 ELGMVGQI--FKGLTFTVVFSLVCS 484



 Score = 89.4 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 83/225 (36%), Gaps = 10/225 (4%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV--PLSTIQNTEIVGPKISRELIRKGI 670
             +   +     +     A T+V  +V+K I E V        +       +   L +  +
Sbjct: 823  NQMRTIHVTAKKQNWRQATTQVQTVVEKAIRENVVLGDDVRVSYGGSFENLQEGLTQFAV 882

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++++ I +   +  +F+ +      + T+ L +   +  + + G   N+      L L
Sbjct: 883  I-ILMAVILVFAVMASQFESFLDPFIVLFTIPLSVIGIVAIYLMTGSPLNMITAVGALVL 941

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G  VN+ +V+ D       L     +  D   K+    L   + T++   + ++PMA +
Sbjct: 942  VGIIVNNGIVLVD---YTNLLRKRGYALEDACIKAAQNRLRPILMTTLTTVLGLVPMAFF 998

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G  +       +  G+      ++F+   +      +R K  
Sbjct: 999  PGEGSEMTQPIGQTVLGGLTFGTLMTLFLMPTLYYVFNRFREKRQ 1043



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 69/223 (30%), Gaps = 10/223 (4%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    E  +               +   +    +SV     +      I +++P     
Sbjct: 265 DIADVYEGYKDVSSLAYMNGTPCVIVSIQKQSGKNSVQTANSVRKQITSIEKLLPADVKL 324

Query: 653 NTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           + E+    I    I+  +   +  + +A+++           +    T+ + +  TLG  
Sbjct: 325 SEEMNTTDIIETSIKNIVSSALSGALLAIIVLFIFLRSIKSTIIIGITIPVSLIITLGLM 384

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  +A +   +G  V++ +V+ + +                      E +  
Sbjct: 385 KFTGFSLNMMTLAGLSLGVGMLVDNSIVILENI---YSYRAKGAKPSVAAVLGSQEMIMA 441

Query: 772 SVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVA 808
              +++      LP+ ++       G +       + F +V +
Sbjct: 442 ITASTLTTICVFLPLVMYSNELGMVGQIFKGLTFTVVFSLVCS 484


>gi|238788137|ref|ZP_04631932.1| Multidrug resistance protein mdtC [Yersinia frederiksenii ATCC
           33641]
 gi|238723724|gb|EEQ15369.1| Multidrug resistance protein mdtC [Yersinia frederiksenii ATCC
           33641]
          Length = 991

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 69/584 (11%), Positives = 165/584 (28%), Gaps = 30/584 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               +   + + +   +    +     +        +      +I L F  +R     A 
Sbjct: 16  VSASMPGADPETMASSIATPLERALGRIAGVNEMTSTSSLGSTRIILQFDLNRDINGAAR 75

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   L    S L                 + ++    +        +       +   +
Sbjct: 76  DVQAALNAAQSLLPSGMPNRPTYRKMNPSDAPIMI-MTLTSDTFTQGQLYDFASTKLAQK 134

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I  +E           L  +  E +PS L     +   +       N  +          
Sbjct: 135 IAQTEGVSDVSVGGSSLPAVRVELNPSALFNQGVSLDAVRQAISAANVRRPQGSIDDSQQ 194

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    ++                      +    +  +             N+   
Sbjct: 195 HWQVQANDEIKTA--------------------EGYRPLVINYHNGAAVRLQDVANVIDS 234

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +  V +  +         + S +   +   T++        L+A         + +    
Sbjct: 235 VQDVRNAGMSDGKPAVLLVISREPGANIIATVDRIRAELPALQASIPASIQLSIAQDRSP 294

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + +  I   LV++V+F+ +  G+  L+   ++ +++I T   + L G +L 
Sbjct: 295 TIRASLDEVERSLVIAVALVILVVFVFLRSGRATLIPAVAVPVSLIGTFTAMYLCGFSLN 354

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I+V E I            +   G      T+   +I+ +  
Sbjct: 355 NLSLMALTIATGFVVDDAIVVLENISRHLEAGVKPMVAALHGVREVGFTVLSMSISLVAV 414

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSID 524
            + L    G      R FA+T+ ++I IS+  ++++   M   ++R + +      +   
Sbjct: 415 FIPLLLMEGLPGRLFREFAVTLSVAIGISLVISLTLTPMMCAHLLRARPVGQQQRIRGFG 474

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
              LS        +      AR+  V +    ++     +      +     G +   + 
Sbjct: 475 KVLLSIQQGYGRSLNWALGHARWVMVVLLSTIALNVWLYISIPKTFFPEQDTGRMMGFIQ 534

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           A++ +    ++  L+            D    F    +   G  
Sbjct: 535 ADQSISFQAMQKKLKDFMKIVHDDPAVDNVTGFTGGSRTNSGSM 578



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 85/242 (35%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V L  V + ++S+Q    +  +       LV  +    + +A    +    
Sbjct: 214 VINYHNGAAVRLQDVANVIDSVQDVRNAGMSDGKPAVLLVISREPGANIIATVDRIRAEL 273

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAIT 698
             +   +P S   +         R  + +    ++I+   +++ +++  +     L    
Sbjct: 274 PALQASIPASIQLSIAQDRSPTIRASLDEVERSLVIAVALVILVVFVFLRSGRATLIPAV 333

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +   
Sbjct: 334 AVPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHLEAGVKPM 390

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFI 815
                 + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ +
Sbjct: 391 VAALHGVREVGFTVLSMSISLVAVFIPLLLMEGLPGRLFREFAVTLSVAIGISLVISLTL 450

Query: 816 AA 817
             
Sbjct: 451 TP 452



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 93/214 (43%), Gaps = 6/214 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            + +   +  + +     V++ +TE+   ++++ T     ++ +E ++  +  ++ +   
Sbjct: 772 TISFNLPEGGSLSAATNAVERAMTELGVPASVRGTFSGTAQVFQETLKSQLWLIMAAIAT 831

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 832 VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 891

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
           ++ D      +     IS R+ I ++        + T++AA    LP+ +    G  +  
Sbjct: 892 MMVDFALNAQRNGN--ISAREAIFQASLLRFRPIMMTTLAALFGALPLVLGSGDGAELRQ 949

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              I +  G+V++   +++    + L+    R++
Sbjct: 950 PLGITIVGGLVMSQLLTLYTTPVVYLYFDRLRSR 983


>gi|168466209|ref|ZP_02700079.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195631382|gb|EDX49942.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 1026

 Score =  149 bits (375), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAISISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAISISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|330900289|gb|EGH31708.1| acriflavin resistance protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 658

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/588 (11%), Positives = 165/588 (28%), Gaps = 44/588 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+L   I  +G +           +   P+      +             L    
Sbjct: 10  RPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +  Q   +I L F   R     A +V   +   
Sbjct: 56  PEVMASTVATPLERSLGSIAGINTMTSNSSQGTTRIILQFDLDRDINGAAREVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    +            + ++   ++   +    +            +       +
Sbjct: 116 RNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P  L Q   +   +       N  +                   
Sbjct: 175 VQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAITSTNVRRPKGFVEDDQHNWQVQANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E   +                       +                 +   +    +   
Sbjct: 235 LETAED--------------------YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    + + +A  +   T+         LRA         +          +    
Sbjct: 275 YNNDRAVLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHEA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++L
Sbjct: 335 EMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALIL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             GL VD  I+V E I            +  +G      T+   N++ +   + + F GG
Sbjct: 395 ATGLVVDDAIVVLENISRHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGG 454

Query: 483 ---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRFFL 533
                 R F+IT+ ++I++S+  ++++   +    ++ ++       +        +   
Sbjct: 455 LVESLFREFSITLSVAIIVSLIVSLTLTPMLCARWLKPREAHGENAFQRWSERVNDQMVA 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             D      MR R   +   ++  + +I L       +      G  +
Sbjct: 515 GYDRSLGWVMRHRRLTLLSLLVTVVVNIALYVVVPKTFLPQQDTGQLM 562



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVAI 471

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           +V+   S+ +   +       R  + 
Sbjct: 472 IVSLIVSLTLTPMLCARWLKPREAHG 497


>gi|317407416|gb|EFV87378.1| acriflavin resistance protein [Achromobacter xylosoxidans C54]
          Length = 1022

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 60/464 (12%), Positives = 127/464 (27%), Gaps = 24/464 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +     +        S  Q   ++ L FA  R     A 
Sbjct: 45  VRAELPGASPESMASTVAAPLERALGGIAGVSAMSSSSNQGATRVLLQFALDRDINAAAR 104

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    ++L      N          + ++    +      A             +
Sbjct: 105 DVQAAINAARAELPSGMPGNPTYRKVNPSQAPIM-ALALSSPTRPAGRLYDLGATVLAQK 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       +       L  +  + +P+ L         +                     
Sbjct: 164 LSQIVGVGEVTLGGSSLPAVRVQVNPNALAHYGVALDDLRQSIADAAPMGPQGQLDSAGQ 223

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           R   G         + +G                    +                 +   
Sbjct: 224 RWEVGTPGQPRTADDYNG--------------------LIVRHQDGATIRLAQIARVSDS 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +                   S +   +   TI         LRA         V      
Sbjct: 264 VENRYSSGFHNHDPAVVLTISRQPGANIIETIAAINQALPGLRALMPADVDLTVVLDRSP 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +      T  +  GLV++V+++ +   +   +   +I + ++ T A++ L G +L 
Sbjct: 324 GIHATLREAHVTLGLAVGLVILVVWLFLGSARAAAIPSVAIPVCLVATFAVMYLWGFSLN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  +++  GL VD  I+V E I     +      +   G      T+    +   + 
Sbjct: 384 NLSLMALIVAAGLVVDDAIVVLENISRHLERGLGPRQAALRGVREVGFTLVAMTLALSVV 443

Query: 474 TVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            V + F GG      R F+IT+  +ILIS+  +++I+ ++    
Sbjct: 444 FVSILFMGGLVERLFREFSITLVAAILISLVVSVAIIPSLCARW 487



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 84/241 (34%), Gaps = 7/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L+ +    +S++    S  +       L   +    + +     +      +  ++P 
Sbjct: 252 IRLAQIARVSDSVENRYSSGFHNHDPAVVLTISRQPGANIIETIAAINQALPGLRALMPA 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                  +         +R+  V + ++   +++ +W+       A      + + +  T
Sbjct: 312 DVDLTVVLDRSPGIHATLREAHVTLGLAVGLVILVVWLFLGSARAAAIPSVAIPVCLVAT 371

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L+G   N  ++ A++   G  V+D +VV + +    +     +  R    + + E
Sbjct: 372 FAVMYLWGFSLNNLSLMALIVAAGLVVDDAIVVLENI---SRHLERGLGPRQAALRGVRE 428

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V  ++A  +  + +   GG V      F+I +   I+++   S+ I   +     
Sbjct: 429 VGFTLVAMTLALSVVFVSILFMGGLVERLFREFSITLVAAILISLVVSVAIIPSLCARWL 488

Query: 825 D 825
            
Sbjct: 489 R 489



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 81/202 (40%), Gaps = 6/202 (2%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             + L  +   +  ++  + IQ       +  ++ ++     ++   +A+ + + I ++  
Sbjct: 814  QQGLAAIDAAMARLMVPAHIQTRLGGDARSFQQSLQDQPWLILGVLVAIYLVLGILYESP 873

Query: 692  F-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  ++TL       L    L  IEF+L A+  +  L+G  + + +++ D        
Sbjct: 874  LHPLTILSTLPSAGVGALLALRLANIEFSLIALLGLFLLVGVVMKNAILMID--FALGLE 931

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                ++    I ++    L   V T++A  +  LP+ +    G  +     + +  G+++
Sbjct: 932  RREGLTPEQAIHRAAMLRLRPIVMTNLAGLLGALPLVLGMGEGSELRRPLGVTIVGGLMI 991

Query: 808  AASSSIFIAAPILLFIYDWRAK 829
            +   +++    + L +   R K
Sbjct: 992  SQFLTLYTTPIVYLALERLRLK 1013


>gi|283785892|ref|YP_003365757.1| multidrug resistance protein [Citrobacter rodentium ICC168]
 gi|282949346|emb|CBG88957.1| multidrug resistance protein [Citrobacter rodentium ICC168]
          Length = 1026

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/608 (12%), Positives = 170/608 (27%), Gaps = 46/608 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILISLAITLCGVL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            S L      +         +  I++     D       E       Q    I   +   
Sbjct: 116 QSLLPSGMPNRPTWRKANPSDAPIMILTLTSDSWSQG--ELYDFASTQLAQTIAQIDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   L  +    +P  L     +   +       N  K          R       
Sbjct: 174 DVDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDNTHRWQLQTND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   E                       +                 +   +  V +  
Sbjct: 234 ELKTAAE--------------------YQPLIVHYHNGGAVRLSDVATVSDSVQDVRNAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +  A      +     + +   T+++       LRA         + +        S   
Sbjct: 274 MTNAKPAILLMIRKLPEANIIQTVDSIRAKLPELRAAIPAAIDLQIAQDRSPTIRASLEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + 
Sbjct: 334 VEQTLVISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLF 478
           +  G  VD  I+V E I            +   G      T+   +++ +      +++ 
Sbjct: 394 IATGFVVDDAIVVLENISRHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMG 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFF 532
              G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++   
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKSSRPREQKRLRGFGRMLVALQQ 513

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +       R  GV +    ++     +      +     G +  G+ A++ +   
Sbjct: 514 GYGRSLKWVLQHTRLVGVVLLGTIALNVWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQ 573

Query: 593 VVRSNLES 600
            +R  LE 
Sbjct: 574 AMRGKLED 581



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 92/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TVSFNLPTGSSLSEASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQLILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    +F   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALEIFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRNGA--LTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+VV+   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVVSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELRAAIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---SRHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       ++  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKSSRPR 496


>gi|332558229|ref|ZP_08412551.1| acriflavin resistance protein [Rhodobacter sphaeroides WS8N]
 gi|332275941|gb|EGJ21256.1| acriflavin resistance protein [Rhodobacter sphaeroides WS8N]
          Length = 1088

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 71/603 (11%), Positives = 170/603 (28%), Gaps = 40/603 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  +G             + RFP+                  +     
Sbjct: 9   RNPVAPLLGFVLLMVLG-----WQAFNTLPITRFPNIDVPLV---------AVTVDQAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++   ++   + F      E         +  
Sbjct: 55  APAEMETQVTKEIEDAVAGVTGVKNITSTVVDGRSTTVVEFRMEVPTEKAVQDTKDAIDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L    +  ++     +  +I+    +   +     E S  +       +       
Sbjct: 115 IRGDLPGGIEAPIVTRIDVEGQAIMTFAVSSPNMTIE--ELSWFVDDTITRALQGKPGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E DP +L     +  +++      N +       +     +     
Sbjct: 173 RVDRYGGAEREIRVELDPVKLDSFGISAPQVNTQLRATNANLGSGRAELGQGEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++   +   +  F   +    V  S                        L   
Sbjct: 233 DAATAGRLAATTIALPSGRFVRLSDLGEVVDS---------------------YEELRSF 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A+ +   ++           A + P     + +  V    G+   
Sbjct: 272 SRFNGEPVVTFAVFRAKGASEVSVAETVNAVLADLARAHPEVRAELVDDTVFYTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L  +V+   +   +   +A  ++ L+ + T  ++ LLG +L L S   I 
Sbjct: 332 ALHTLLEGALLATLVVLAFLRNWRATFIAAVALPLSAVPTFWVMDLLGFSLNLVSFLAIT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +  +++T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIRMGKSPYRAAIDAADEIGMAVIATSLTIVAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F +T+ +S+L S+  A  I   M  +++R K                   +
Sbjct: 452 GIPGQYFAQFGLTVAISVLFSLLVARLITPMMAAYLMRSKDADEKSHGDGFIMRGYLGLV 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +G   +F++    +L   G     +    I L V       L       
Sbjct: 512 RQTLRFRYLTLLGAIGVFAVSMFFMLRIPGSFIPPEDVSRIPLSVELAPGSSLDETDRTT 571

Query: 599 ESL 601
           +++
Sbjct: 572 QAI 574



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 79/256 (30%), Gaps = 6/256 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + + R V LS +   ++S +      +            + +    V+    +  V 
Sbjct: 244 TIALPSGRFVRLSDLGEVVDSYEELRSFSRFNGEPVVTFAVFRAKGASEVSVAETVNAVL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P    +  +                 +  + +A L+ +     W     A   
Sbjct: 304 ADLARAHPEVRAELVDDTVFYTYGNYEAALHTLLEGALLATLVVLAFLRNWRATFIAAVA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L    T     L G   NL +  A+    G  V+D +V  + +    +      S   
Sbjct: 364 LPLSAVPTFWVMDLLGFSLNLVSFLAITLATGILVDDAIVEIENI---ARHIRMGKSPYR 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
               + +E     + TS+      +P++   G        F + +A  ++ +   +  I 
Sbjct: 421 AAIDAADEIGMAVIATSLTIVAVFVPVSFMPGIPGQYFAQFGLTVAISVLFSLLVARLIT 480

Query: 817 APILLFIYDWRAKNAR 832
             +  ++   +  + +
Sbjct: 481 PMMAAYLMRSKDADEK 496



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 7/184 (3%)

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E    ++ +EL+      +I+  + +L + I +          + +L L I        
Sbjct: 856  QEAGDAEVQQELMTSFGNAMILGLMLVLTVLILLFRSVLQPFTILFSLPLAIGGVAAALI 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G   ++  +  +L L+G    + +++ D   +        +     I ++ ++     
Sbjct: 916  LTGSALSMPVLIGILMLMGIVTKNAILLVDFAVEMRA---RGMDRFSAILEAGHKRARPI 972

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            V TS+A    +LP A+    GG      A  +  GI+V+   S+ I     L + D    
Sbjct: 973  VMTSIAMSAGMLPSALGVGEGGPFRAPMATAVIGGIIVSTVLSLVIVPSFFLIMDDLSRL 1032

Query: 830  NARI 833
             AR+
Sbjct: 1033 FARL 1036


>gi|194442489|ref|YP_002041400.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|226700782|sp|B4SXW1|MDTC_SALNS RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|194401152|gb|ACF61374.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 1026

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|92119069|ref|YP_578798.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
 gi|91801963|gb|ABE64338.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
          Length = 1040

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 88/683 (12%), Positives = 192/683 (28%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    V+   ++  +G +      + +      P                   +     
Sbjct: 11  RHPLPSVLFSIILLTLGWVSFTKLAITRLPNADIPVIS--------------VAVSQFGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ FA     +   + V   +  
Sbjct: 57  APAELEAQVTKTIEDGVSGVEGVRHISSSITDGLSLTTIQFALETNTDRALNDVKDAVTR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +  + L+       + IV              + S  +       +       
Sbjct: 117 VRANLPQNVNEPLIQRVDVIGLPIVTYAAISPGKTPE--QLSYFVDDVVKRALQGVRGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RLR    T   +S      N    G    +     +     
Sbjct: 175 QVERIGGVEREILVSLDPDRLRAAGLTAVDVSQRLRGINVDVAGGRAEIGRNDQAIRTLA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   E++G  ++                                  +   +A      
Sbjct: 235 GAKTINELAGTMISLPA--------------------GGELRLDDLGTVTDTIADRRTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S     +        L+     + L +++  +V    G+   
Sbjct: 275 RFNGEPVVALGIKRSKGASDVVVAKAVQERIDALKEQYPEVDLKLID-TSVEFTKGNYEA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +I++F+ +   +  ++A  S+ L++      + LLG +L L S   I 
Sbjct: 334 AISTLFEGATLAVIIVFLFLRDIRATVIAAISLPLSIFPAFWAMDLLGFSLNLVSFLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A   I  + I        + 
Sbjct: 394 LSTGILVDDAIVEIENIVRHMRMGKSAYRAALEAADEIGLAVIAISLTIIAIFAPASFMS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ + +  S+  A  +   +  + ++    ++    P+ R +      
Sbjct: 454 GIAGQFFKQFGITVSVQVFFSLLAARFVTPVLAAYFMKDHPHEAPPPGPVLRAYASLVTW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           +++               SI SI LL    L      +  + + +     +  +   +  
Sbjct: 514 SVRHYFVTVLIGFAVFAASIWSIKLLPQGFLPAQDTARSLLAMELPPGSQLAYTEKVTEN 573

Query: 599 ESLQIGDISFQN--FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            + ++         F         LQ     S+      +  +      + LS  Q  E 
Sbjct: 574 IAARLRKRPEVTSVFVDGGRVPPGLQEVRRASLIINYTPKQDRGITQRELELSIGQELES 633

Query: 657 VGPKISRELIRKGIVGVIISAIA 679
           V       L   G+  V +    
Sbjct: 634 VPDIRYWFLDENGLRAVSLVVTG 656



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 76/249 (30%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + A   + L  + +  +++       +        L   + +    V   + ++   
Sbjct: 246 MISLPAGGELRLDDLGTVTDTIADRRTFARFNGEPVVALGIKRSKGASDVVVAKAVQERI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             + E  P   ++  +                    + +A++I           + A  +
Sbjct: 306 DALKEQYPEVDLKLIDTSVEFTKGNYEAAISTLFEGATLAVIIVFLFLRDIRATVIAAIS 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I        L G   NL +  A+    G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSIFPAFWAMDLLGFSLNLVSFLAITLSTGILVDDAIVEIENI---VRHMRMGKSAYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     +  S+           + G  G     F I ++  +  +  ++ F+ 
Sbjct: 423 AALEAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARFVT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PVLAAYFMK 491



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 62/167 (37%), Gaps = 7/167 (4%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL       +    + +   + + F  +   +  + +L L I   +    L G +    
Sbjct: 839  NELSEGFATAITAGLMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIMALLLTGKQLTTP 898

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
                +L L+G    + +++ +   ++++         + I  +  +     V T++A   
Sbjct: 899  VWIGILMLMGIVTKNAIMLVEFAVESIRQGRAR---EEAIIDAGMKRARPIVMTTVAMVA 955

Query: 782  SVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             ++P A+    GG      A+ +  G++ +   S+     + L + D
Sbjct: 956  GMMPSALAFGAGGEFRSPMALAVIGGLIFSTILSLVFVPAMFLVMDD 1002


>gi|83756418|gb|ABC44531.1| protein-export membrane protein SecD [Salinibacter ruber DSM 13855]
          Length = 620

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 138/500 (27%), Positives = 245/500 (49%), Gaps = 41/500 (8%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
           L+   D      +Q     +R+ + + G+   S+++  + +I +       +E + D + 
Sbjct: 120 LQGQADTA----VQNGIQVVRNRVNQYGVTEPSIQRQGDERIVVELPGVSDRERVRDLLE 175

Query: 117 LFLQGVN------SKLNVDPKKNLLV--TTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168
              Q          +L    ++ +     T E    I  +Q         + + S     
Sbjct: 176 SASQLTFHLMANPQQLGESVQRMIEYYEPTAEDSARIAEAQAADTAATEASTDTSGVTEG 235

Query: 169 QRIDQIGISESTIQRLGSHRI------------------LIQLPGEQDPSRLRQLLGTTA 210
             +      E++  +     +                  +  +PG++ P   R     T+
Sbjct: 236 TELAASSGQEASGGQQQGTALTEPGESAQTGPQNSLLAAMQPMPGQEQPIIGRAFASDTS 295

Query: 211 KMSFHKVLPNNSKKGFM------FGVRFLRDSDGNQYL----VEDKVEISGIHLNGATAN 260
           +++     P+                  L   DG +      V  + E++G  +  A+  
Sbjct: 296 RVNELLQDPSVQNMLPPGIEPMWTASPVLTTEDGREAFHLLAVRAEPELTGEVVTEASVQ 355

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
           FD +T++P V I+ +  GARR+  +T  NIG  +++VLD  V ++P I   I  G+ +I+
Sbjct: 356 FDRQTNEPKVSITMNSDGARRWDRITAANIGNRVSIVLDDIVYSSPNIQSRISGGRTEIT 415

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
           G  + + A  +  +L++G L   LNI+ ER VG  LG +S   G  ++VAG +L+VLFMI
Sbjct: 416 GLESRQEASDIVTVLQSGRLQTDLNIISERTVGPSLGEESTRAGFISVVAGFLLVVLFMI 475

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           + Y   G+VAD ++ LN+IL + +L+  GATLTLP IAGIVL IG+AVD+N+LV +R+RE
Sbjct: 476 MYYRTAGVVADIALLLNLILIMGILAGFGATLTLPGIAGIVLTIGMAVDANVLVYDRVRE 535

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E    +++  +++ G+ ++ S I D+NIT     V+L+ FG G ++GFA+T+   IL S+
Sbjct: 536 EQATGKTLRAAINAGYEQSLSAILDANITTFFVGVILYSFGVGPIKGFAVTLMAGILASL 595

Query: 501 FTAISIVRAMMIFIIRYKKM 520
           FTAI + R +  +++  ++M
Sbjct: 596 FTAIIVTRIIFDYMVEDRRM 615



 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 86/182 (47%), Gaps = 4/182 (2%)

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               I +   VGP +  E  R G + V+   + +++++ + ++    + A   L+L++  
Sbjct: 437 TDLNIISERTVGPSLGEESTRAGFISVVAGFLLVVLFMIMYYR-TAGVVADIALLLNLIL 495

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +G  A FG    L  +A ++  IG +V+  V+VYDR+R+      T  + R  I+    
Sbjct: 496 IMGILAGFGATLTLPGIAGIVLTIGMAVDANVLVYDRVREEQA---TGKTLRAAINAGYE 552

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++L   +  ++  F   + +  +G   I  FA+ +  GI+ +  ++I +   I  ++ + 
Sbjct: 553 QSLSAILDANITTFFVGVILYSFGVGPIKGFAVTLMAGILASLFTAIIVTRIIFDYMVED 612

Query: 827 RA 828
           R 
Sbjct: 613 RR 614



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/195 (20%), Positives = 84/195 (43%), Gaps = 16/195 (8%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87
            +    ++   +  + ++LGLDL+GG H+ LEV+  + +N       +  +  L+     
Sbjct: 12  YREDNRQWLQQVDASSLNLGLDLQGGMHVTLEVEIGNLLNQLAVNKDEAFQQALRTAEQR 71

Query: 88  VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
                    +  +   ++   +         L         D  +     ++  E     
Sbjct: 72  AEEENVSVVEAFVEEFEAENPDG-------RLSRYFRNQGEDITR----RSSNDE----- 115

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
            Q  +      A++  ++++R R++Q G++E +IQR G  RI+++LPG  D  R+R LL 
Sbjct: 116 VQEYLQGQADTAVQNGIQVVRNRVNQYGVTEPSIQRQGDERIVVELPGVSDRERVRDLLE 175

Query: 208 TTAKMSFHKVLPNNS 222
           + ++++FH +     
Sbjct: 176 SASQLTFHLMANPQQ 190


>gi|255034611|ref|YP_003085232.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
 gi|254947367|gb|ACT92067.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
          Length = 1051

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/545 (11%), Positives = 151/545 (27%), Gaps = 37/545 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +     LL+     L +  + RFP   P   +  G    GG       + 
Sbjct: 8   RPVMATVISVV-----LLMLGILGLMRLPVTRFPDISPPTVMVSGT-YPGG-------NS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
           +  +   +    +++ + ++       +     +  I++ F      +  A  V   +Q 
Sbjct: 55  EAVIRSVVTPLEEQI-NGVENMQYIKSTASNDGSFSISVIFKQGVDPDQAAVNVQNRVQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV-ISHAIEQSMEIIRQRIDQIGISEST 180
               L  +  +  L T+ ++   I++             +     +    + QI      
Sbjct: 114 ATPILPQEVIQMGLTTSKQQNSMIMIFNVYTTDNAKYDELFLQNYVNINLVPQIKRVPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +    +P ++       + ++      +        G           
Sbjct: 174 GQAQAFGSKDYSMRVWLNPQKMASFGLVPSDVNQAIADQSFEAAPGKLGQES-------- 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    +                    +I     G           I          
Sbjct: 226 ---------TAALEYVMRYKGKKNQPAEYENIIVKSNGTELVRLKDVARIEFGSLNYSGN 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +                 + N        +         P                + S
Sbjct: 277 SLSNGKNAVTVAILQTTGSNANEIEIGVSDVLQKASKTFPPGIKYTSLMSTKERLDEATS 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T      LV IV+F+ +   +  ++   ++ + +I T   L   G T+ + ++  +
Sbjct: 337 QVKSTLVEAFILVFIVVFLFLQDFRSTIIPAIAVPVAIIGTFFFLMAFGFTINVLTLFAL 396

Query: 421 VLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E +  +    N S   +           +    +      + + F
Sbjct: 397 VLAIGIVVDDAIVVVEAVHAKMDGSNMSGKEATHSAMGEITGAVISITLVMSAVFIPIGF 456

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G +    + FA T+ ++I+IS   A+++  A+   +++    +       +  F    
Sbjct: 457 MTGSSGIFYKQFAYTLAIAIIISAVNALTLTPALCALLLKNNHAEGHGDKQHNAGFGKRF 516

Query: 537 CIAIQ 541
             A  
Sbjct: 517 FTAFN 521



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/162 (12%), Positives = 61/162 (37%), Gaps = 9/162 (5%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I++   + +Y  +      +   L  + ++   I  +       G++ N+     ++ L+
Sbjct: 879  ILALCMLFVYFLLAAQYESYLLPLAVLLSIPTGIVGSFAATKFIGLDNNIYVQVGLIMLV 938

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
            G    + +++ +     ++     +S  +   +     L   + TS+A  + ++P+ +  
Sbjct: 939  GLLAKNAILIVEFA---VQRRAGGLSIVESAIEGARSRLRPIIMTSLAFIVGMIPLMIAT 995

Query: 791  GSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G       S +   A G++      +F+   + +     + K
Sbjct: 996  GGSAMGNRSISTGAAMGMLSGVVLGVFVIPLLYILFQFLQEK 1037



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 76/220 (34%), Gaps = 9/220 (4%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 V +            +   V   + +                    L       
Sbjct: 279 SNGKNAVTVAILQTTGSNANEIEIGVSDVLQKASKTFPPGIKYTSLMSTKERLDEATSQV 338

Query: 673 ---VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              ++ + I + I +++    +   +     + + I  T  F   FG   N+  + A++ 
Sbjct: 339 KSTLVEAFILVFIVVFLFLQDFRSTIIPAIAVPVAIIGTFFFLMAFGFTINVLTLFALVL 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG  V+D +VV + +    K+  +++S ++    ++ E  G  +  ++      +P+  
Sbjct: 399 AIGIVVDDAIVVVEAVH--AKMDGSNMSGKEATHSAMGEITGAVISITLVMSAVFIPIGF 456

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             GS       FA  +A  I+++A +++ +   +   +  
Sbjct: 457 MTGSSGIFYKQFAYTLAIAIIISAVNALTLTPALCALLLK 496


>gi|161986636|ref|YP_445942.2| preprotein translocase subunit SecD [Salinibacter ruber DSM 13855]
          Length = 654

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 134/500 (26%), Positives = 241/500 (48%), Gaps = 41/500 (8%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
           L+   D      +Q     +R+ + + G+   S+++  + +I +       +E + D + 
Sbjct: 154 LQGQADTA----VQNGIQVVRNRVNQYGVTEPSIQRQGDERIVVELPGVSDRERVRDLLE 209

Query: 117 LFLQGVN------SKLNVDPKKNLLVTTTEKEISIVLSQN---------------NIDQV 155
              Q          +L    ++ +       E S  +++                 + + 
Sbjct: 210 SASQLTFHLMANPQQLGESVQRMIEYYEPTAEDSARIAEAQAADTAATEASTDTSGVTEG 269

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFH 215
              A     E    +     ++E         +  +    +  P + + ++G        
Sbjct: 270 TELAASSGQEASGGQQQGTALTEPGESAQTGPQNSLLAAMQPMPGQEQPIIGRAFASDTS 329

Query: 216 KVLPNNSKKGFMFGVRF-----------LRDSDGNQYL----VEDKVEISGIHLNGATAN 260
           +V            +             L   DG +      V  + E++G  +  A+  
Sbjct: 330 RVNELLQDPSVQNMLPPGIEPMWTASPVLTTEDGREAFHLLAVRAEPELTGEVVTEASVQ 389

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
           FD +T++P V I+ +  GARR+  +T  NIG  +++VLD  V ++P I   I  G+ +I+
Sbjct: 390 FDRQTNEPKVSITMNSDGARRWDRITAANIGNRVSIVLDDIVYSSPNIQSRISGGRTEIT 449

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
           G  + + A  +  +L++G L   LNI+ ER VG  LG +S   G  ++VAG +L+VLFMI
Sbjct: 450 GLESRQEASDIVTVLQSGRLQTDLNIISERTVGPSLGEESTRAGFISVVAGFLLVVLFMI 509

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           + Y   G+VAD ++ LN+IL + +L+  GATLTLP IAGIVL IG+AVD+N+LV +R+RE
Sbjct: 510 MYYRTAGVVADIALLLNLILIMGILAGFGATLTLPGIAGIVLTIGMAVDANVLVYDRVRE 569

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E    +++  +++ G+ ++ S I D+NIT     V+L+ FG G ++GFA+T+   IL S+
Sbjct: 570 EQATGKTLRAAINAGYEQSLSAILDANITTFFVGVILYSFGVGPIKGFAVTLMAGILASL 629

Query: 501 FTAISIVRAMMIFIIRYKKM 520
           FTAI + R +  +++  ++M
Sbjct: 630 FTAIIVTRIIFDYMVEDRRM 649



 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 40/182 (21%), Positives = 86/182 (47%), Gaps = 4/182 (2%)

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               I +   VGP +  E  R G + V+   + +++++ + ++    + A   L+L++  
Sbjct: 471 TDLNIISERTVGPSLGEESTRAGFISVVAGFLLVVLFMIMYYR-TAGVVADIALLLNLIL 529

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +G  A FG    L  +A ++  IG +V+  V+VYDR+R+      T  + R  I+    
Sbjct: 530 IMGILAGFGATLTLPGIAGIVLTIGMAVDANVLVYDRVREEQA---TGKTLRAAINAGYE 586

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++L   +  ++  F   + +  +G   I  FA+ +  GI+ +  ++I +   I  ++ + 
Sbjct: 587 QSLSAILDANITTFFVGVILYSFGVGPIKGFAVTLMAGILASLFTAIIVTRIIFDYMVED 646

Query: 827 RA 828
           R 
Sbjct: 647 RR 648



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/240 (18%), Positives = 93/240 (38%), Gaps = 34/240 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFL------------------PQSMLDRFPSAMPKN 42
           M+ N + V L      +      P+                     +    ++   +  +
Sbjct: 1   MQGNGFKVGLTIFFVGLCGFYLFPSVQNLYVSYKMNNMSEEERVEYREDNRQWLQQVDAS 60

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
            ++LGLDL+GG H+ LEV+  + +N       +  +  L+              +  +  
Sbjct: 61  SLNLGLDLQGGMHVTLEVEIGNLLNQLAVNKDEAFQQALRTAEQRAEEENVSVVEAFVEE 120

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
            ++   +         L         D  +     ++  E      Q  +      A++ 
Sbjct: 121 FEAENPDG-------RLSRYFRNQGEDITR----RSSNDE-----VQEYLQGQADTAVQN 164

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
            ++++R R++Q G++E +IQR G  RI+++LPG  D  R+R LL + ++++FH +     
Sbjct: 165 GIQVVRNRVNQYGVTEPSIQRQGDERIVVELPGVSDRERVRDLLESASQLTFHLMANPQQ 224


>gi|149923076|ref|ZP_01911492.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Plesiocystis pacifica SIR-1]
 gi|149816052|gb|EDM75564.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Plesiocystis pacifica SIR-1]
          Length = 1034

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 66/676 (9%), Positives = 180/676 (26%), Gaps = 51/676 (7%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           +  +L   +   G         P+  +D +PS                + ++    +   
Sbjct: 2   FAAMLIMALVVFGFFS-----YPRLGVDLYPSVDFPVVT---------ATVIYPGADPMT 47

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +   +    +E    +           +    + + F      +   D+V   +  +  +
Sbjct: 48  MESKVAEPIEEAIQGIAGIKRMTSRNLEGVTMVVVEFELEVQSDRALDQVREKVAAIEGQ 107

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
           L       ++         I           S     + +I      ++   +   Q   
Sbjct: 108 LPPGIDPPIIQRFDTGSAPIASVALASQLPASELTRVADKI---VKQELQQIQGVGQIEL 164

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
                 Q+  E +PS+L         +       +                         
Sbjct: 165 IGGRERQIRIEVEPSKLVGYGLAVGDVVQTLQAQSMDLPAGH------------------ 206

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
              + G      T   + ++ + + D++   +G           +   +        L  
Sbjct: 207 --VLDGAREFTVTTRGEVRSVEEIADLTITGLGGAAIRISDVATVVDDMEEARSASSLNG 264

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL-NIVEERNVGADLGSDSIYKG 364
                 +   K+  +     +        L      + +   V   N      S    + 
Sbjct: 265 ESAIALVVRKKSGANTIAIADGVYERLEKLEPRFEEMGITYSVPNDNSTFVRRSIEDVQL 324

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
              I + L ++++F+ +   +   ++  +I  +VI T A +  +G TL   ++  + L I
Sbjct: 325 DLIIGSALTVLIIFVFLHDFRATFISALAIPTSVIGTFAFMEAMGFTLNNITMLALSLSI 384

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG--- 481
           G+ VD  I+V E I       +    +     +     +  + ++ +   V + +     
Sbjct: 385 GILVDDAIVVIENIYRHLEMGKPRMQAAREATNEIAFAVIATTLSIVAVFVPVAYMSGLI 444

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI-------DINPLSRFFLI 534
           G     F +T+  ++LISMF + ++   +   +++                   +     
Sbjct: 445 GRFFYEFGLTVSAAVLISMFVSFTLTPMLSGRMMKATHETKPEDKFILARAFDKAFGAFE 504

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN---YGIDFKGGIQLGVLANRPVDL 591
                +     RF  + I+       + ++    +       + +    + V       L
Sbjct: 505 DGYTWLVRKALRFPWLTIAAAVVTLVLSVVVVSQVPGEFIPPEDRSEFAITVEMPTGTSL 564

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
               +  +++            +    +     P         L     +    +     
Sbjct: 565 EATEAVADTISNDIRENLPGVRDTFTTIGSGTSPVSRAKINVALVGPHSRSYAQLEGMAW 624

Query: 652 QNTEIVGPKISRELIR 667
               +         ++
Sbjct: 625 VRERVSDLSEQDINVK 640



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 80/235 (34%), Gaps = 12/235 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +      +   + +           + L  +         + + V +++ ++ P      
Sbjct: 243 ISDVATVVDDMEEARSASSLNGESAIALVVRKKSGANTIAIADGVYERLEKLEPRFEEMG 302

Query: 654 TEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                P  +   +R+ I       +I SA+ +LI       +     +   +   +  T 
Sbjct: 303 ITYSVPNDNSTFVRRSIEDVQLDLIIGSALTVLIIFVFLHDFRATFISALAIPTSVIGTF 362

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            F    G   N   + A+   IG  V+D +VV + +    +             ++ NE 
Sbjct: 363 AFMEAMGFTLNNITMLALSLSIGILVDDAIVVIENI---YRHLEMGKPRMQAAREATNEI 419

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPIL 820
               + T+++     +P+A   G +      F + ++  ++++   S F   P+L
Sbjct: 420 AFAVIATTLSIVAVFVPVAYMSGLIGRFFYEFGLTVSAAVLISMFVS-FTLTPML 473



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 65/168 (38%), Gaps = 11/168 (6%)

Query: 663  RELIRKGIVGV--IISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIE 717
             E++ +    +  ++   A+L+Y+ +          L  + +L L +    G   + G+ 
Sbjct: 836  AEMMEESFTAMMAVLGLAAILVYMILAAQFNSLTQPLVIMVSLPLSVIGAFGGIWISGMT 895

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             N+ +   ++ L+G      +++ D      +      S  + +  +    L     T+ 
Sbjct: 896  LNIFSFIGIIMLMGLVTKAAILLVDFANSEREA---GASLEEALASAGRVRLRPIFMTAA 952

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            A    +LP+A+    GG      A+ +  G+V +   ++ +   + L 
Sbjct: 953  ATIFGMLPIALAISEGGETRAPMAVCVIGGMVTSTLLTLVVIPAVYLI 1000


>gi|260578824|ref|ZP_05846731.1| protein-export membrane protein SecD [Corynebacterium jeikeium ATCC
           43734]
 gi|258603122|gb|EEW16392.1| protein-export membrane protein SecD [Corynebacterium jeikeium ATCC
           43734]
          Length = 627

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 104/518 (20%), Positives = 193/518 (37%), Gaps = 43/518 (8%)

Query: 45  SLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD 104
            LG+DL+GG+ + L    D      L      L + +   G+   S+    N + ++   
Sbjct: 46  KLGIDLQGGTRVTLVPQGDTPTPDQLSQARTILENRVNGMGVSGASVVTDGNNLVITVP- 104

Query: 105 SRFKENIADK---VTLFLQGVNSKLNVDPKKNLLVTTTEKEIS---IVLSQNNIDQVIS- 157
                          L  +               V           I+  +   +++   
Sbjct: 105 GSDAGEARSLGKTSQLLFRPEAQPGQPTKDFPEAVKKMANRWVENGIITPEFANERLSRM 164

Query: 158 -------HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
                     +   E+           +S  ++    + +  L  ++  +   +     A
Sbjct: 165 VKAFPQLGLKDAPKELKVTAKPPAEPKDSVEEQERRDKQVEVLKADRQSTDGNKQQAAGA 224

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV----------EDKVEISGIHLNGA--- 257
            +   K  P          +    D                  ++   ++G  ++     
Sbjct: 225 LLDCEKNDPMAGSDDADKPLVTCSDQGPMVLGPAPLLKGETDEKNGERLTGEMIDTNSQI 284

Query: 258 ----TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-I 312
                 N                 G   ++ + +  +GK +A+ LD +V++AP I     
Sbjct: 285 TGGLQPNSAQMAITFKFKTGEQTPGGETWYALGQQMMGKRVAITLDSKVISAPEIQSPTP 344

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTC 366
           P   +QI+G+F+ + A  LA  LR G+LP+               +   LG+ S+  G  
Sbjct: 345 PGEVSQITGSFSEKEAQDLANNLRYGALPLSFVGENGEPGGTTTTISPSLGAASLKAGVI 404

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVL 422
           A + GLVL+ L+ +  Y   G+VA  S+     L    + LLG     +L L  IAG+++
Sbjct: 405 AGLVGLVLVGLYALAYYRGLGVVAIISLIAAFSLVYGFIVLLGRWIGYSLDLSGIAGLII 464

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           G+G   DS ++  ERI+++ +   +   ++   + RA STI   NI +LIA V+L+F   
Sbjct: 465 GLGTTADSFVIYFERIKDDIKNGSTFRSAVPRAWQRARSTIVTGNIVSLIAAVILYFLAV 524

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G V+GFA T+GL+ +  +  A  +   +MI + R    
Sbjct: 525 GDVKGFAFTLGLTTVFDLVVAFLLTAPLMILMSRRPSF 562



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 84/227 (37%), Gaps = 8/227 (3%)

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            +I      GE + +     +         +                   T  + P +  
Sbjct: 337 PEIQSPTPPGEVSQITGSFSEKEAQDLANNLRYGALPLSFVGENGEPGGTTTTISPSLGA 396

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFN 719
             ++ G++  ++  + + +Y    ++    + AI +LI   +   GF  L G       +
Sbjct: 397 ASLKAGVIAGLVGLVLVGLYALAYYR-GLGVVAIISLIAAFSLVYGFIVLLGRWIGYSLD 455

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L+ +A ++  +G + +  V+ ++R++ ++K      +FR  + ++        V  ++ +
Sbjct: 456 LSGIAGLIIGLGTTADSFVIYFERIKDDIK---NGSTFRSAVPRAWQRARSTIVTGNIVS 512

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I+ + +       +  FA  +    V     +  + AP+++ +   
Sbjct: 513 LIAAVILYFLAVGDVKGFAFTLGLTTVFDLVVAFLLTAPLMILMSRR 559


>gi|323359956|ref|YP_004226352.1| preprotein translocase subunit SecF [Microbacterium testaceum
           StLB037]
 gi|323276327|dbj|BAJ76472.1| preprotein translocase subunit SecF [Microbacterium testaceum
           StLB037]
          Length = 328

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 131/311 (42%), Gaps = 12/311 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L     +  F++ R     I+ L  I +  +     + + I+F GG Q  +
Sbjct: 2   RSMTQLGNDLYSGKTSFPFVQRRRIWFLIAALLVIGAALVPLARPIQFSIEFTGGSQFTI 61

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                VD S+    + S+  G  +      ++   V+      D             ++ 
Sbjct: 62  SNPATVDQSLATQAVSSVVPGASTRVTVINDEAVRVQTDQMSNDETQAVSAALASAYQVP 121

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                        +G     ++ R+ + G+ I      + + + F+ W  ++ AI  L+ 
Sbjct: 122 SSEV-----TNSFIGATWGADVTRQSLWGLAIFLALTFLILALYFRTWKMSVAAIIGLVD 176

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDL 760
            +  T+G +ALFG E +  AV   LT++ Y++ D  VV+D++R+N +     +  +F + 
Sbjct: 177 VLVITVGIYALFGFEISPAAVIGFLTILSYALYDTTVVFDKVRENTREDGEISGRTFAES 236

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGS----VIGSFAIPMAFGIVVAASSSIFIA 816
           ++ + N+TL RS+ T++ A + +  +   G       +   ++ +  G +VAA S++F+A
Sbjct: 237 VNLAANQTLIRSINTTIVAVLPIGAILFIGVPLGARTLSDISLSIFVGTLVAAYSTLFVA 296

Query: 817 APILLFIYDWR 827
            P+   + +  
Sbjct: 297 VPLYALLRERE 307


>gi|302879022|ref|YP_003847586.1| acriflavin resistance protein [Gallionella capsiferriformans ES-2]
 gi|302581811|gb|ADL55822.1| acriflavin resistance protein [Gallionella capsiferriformans ES-2]
          Length = 1026

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 65/543 (11%), Positives = 154/543 (28%), Gaps = 40/543 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N    ++ + ++   G +           +  FP                     L   
Sbjct: 9   KNPIPAILAFVLLTLAGFM-----GFSAMKVQLFPDIDLPMIT---------VTTTLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +      +        +++    ++  F   R      + V   +  
Sbjct: 55  SPDQMEAEVARKIENALVGAQGLKHLYTQVKEGVAIVSAEFRLERDSHAALEDVRSAVTR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  +  + ++         I+     +  +     E S  +       +   +   
Sbjct: 115 VRSDLPREINEPVISKVEISGKPILTYAVTVPNMSEE--ELSWFVDNNMTRLMLGVKGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   +  E DP++L  L  + A +S    L      G    +  +  +     
Sbjct: 173 AVSRVGGVTRLVRVELDPAKLLALNLSAADVSARLKLIEQEAPGGRMDIGGMEQAVRTVA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   ++                      ++      R         +   +A      
Sbjct: 233 TVQTAEQLE--------------------QMTLSLKDGRSIRLGEVATVRDTIAERRQAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +           S     +        L+A    +         V     +   
Sbjct: 273 MLNGKSVVGFEIMRSLGSSDVEVFDGVTAALNKLQASRPDVHTEK-VFDTVERISDAYRG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+   +   +  +VA  ++ L VI T A++ L G ++ + ++  + 
Sbjct: 332 SMEMIFEGALLAVIVVIFFLRNTRATVVAATALPLAVIPTFAVMYLFGFSINVITLLSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I       ++ + +           +  +  T +   +   F  
Sbjct: 392 LVVGVLVDDAIVEIENIMRHLEMGKTPYEAAMEAADEIGMAVIATTFTLVAVFLPTAFMS 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    F  T  +++L S+  A  +   M  +++R +   +              C+
Sbjct: 452 GIPGRFFVQFGWTSAIAVLFSLLVARMLTPMMSAYLLRPRLPHAEPAWMGMYLTWASWCL 511

Query: 539 AIQ 541
           A +
Sbjct: 512 AHR 514



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 85/257 (33%), Gaps = 6/257 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + L +   R + L  V +  +++     +             ++      V     +  
Sbjct: 242 QMTLSLKDGRSIRLGEVATVRDTIAERRQAAMLNGKSVVGFEIMRSLGSSDVEVFDGVTA 301

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              K+    P    +       +IS        +    + +A+++ I+        + A 
Sbjct: 302 ALNKLQASRPDVHTEKVFDTVERISDAYRGSMEMIFEGALLAVIVVIFFLRNTRATVVAA 361

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
           T L L +  T     LFG   N+  + ++  ++G  V+D +V  + +   M+      + 
Sbjct: 362 TALPLAVIPTFAVMYLFGFSINVITLLSLSLVVGVLVDDAIVEIENI---MRHLEMGKTP 418

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIF 814
            +   ++ +E     + T+       LP A   G        F    A  ++ +   +  
Sbjct: 419 YEAAMEAADEIGMAVIATTFTLVAVFLPTAFMSGIPGRFFVQFGWTSAIAVLFSLLVARM 478

Query: 815 IAAPILLFIYDWRAKNA 831
           +   +  ++   R  +A
Sbjct: 479 LTPMMSAYLLRPRLPHA 495



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 66/185 (35%), Gaps = 13/185 (7%)

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI 716
              +  +EL     + +    + + I + + FK +      +  L+L I        L   
Sbjct: 834  DAEAMKELFASFGLAMATGVLCIYIVLVLLFKDFMQPTTILAALVLSIPGAFLALFLSRT 893

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              ++ ++  ++ L+G +  + +++ +     +      ++  D +  +  +     V T+
Sbjct: 894  ALSMPSMIGLIMLMGIATKNSILLVE--YAIISRRERGMNRGDALLDACRKRARPIVMTT 951

Query: 777  MAA---FISVLPMAVWGGSVIGS-FAIPMAFGIVVAASSSIFIAAPI------LLFIYDW 826
            MA     + V      G        AI +  G++ +   S+ +   +      ++     
Sbjct: 952  MAMGAGMLPVALNLGMGDGSFREPMAIVVIGGLITSTFLSLLVVPVVFTYVDDVVQWLSR 1011

Query: 827  RAKNA 831
            R K A
Sbjct: 1012 RFKPA 1016


>gi|227115076|ref|ZP_03828732.1| multidrug efflux system subunit MdtC [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 533

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 55/507 (10%), Positives = 135/507 (26%), Gaps = 24/507 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +     +        +      ++ L F   R     A 
Sbjct: 47  VSASLPGASPETMASAVATPLERALGRIAGVSEMTSTSSLGSTRVILVFNFDRDINGAAR 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    + L                 + V+    +        +       Q   +
Sbjct: 107 DVQAAINAAQNLLPSGMSSRPTYRKVNPSDAPVMI-LTLTSDTYSQGQLYDFASTQLSQK 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I   E           L  +    +P  L     +  ++       N  +          
Sbjct: 166 ISQMEGVGDVSIGGSSLPAVRVALNPVALFNQGISLDEVRQAIAQANVRQPLGNVENSQK 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    ++                           +                 +   
Sbjct: 226 SWQIQTNDELKTA--------------------DAYAPLIIHYNNGAAVRLSDVATVEDS 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +    +  ++ +      +       +   T++        LRAG        + +    
Sbjct: 266 VQNTRNAGMVNSKPAILVMIRRAPDANIITTVDNIRAAMPELRAGLPAEIQLDIAQDRSP 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S +  + +  I   LV++V+F+ +   +   +   ++ +++I T A + L G +L 
Sbjct: 326 TIRASLAEVEQSLIIAVALVILVVFLFLRSARATAIPALAVPVSLIGTFAAMYLCGFSLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I+V E I            +   G      T+   +++ +  
Sbjct: 386 NLSLMALTIATGFVVDDAIVVLENISRHIEAGMKPLQASLQGVREVGFTVLSMSLSLVAV 445

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L    G      R FA+T+ ++I+IS+  ++++   +   ++R    +S        
Sbjct: 446 FIPLLLMDGLPGRLFREFAVTLSVAIMISLLISLTLTPMLCARLLRAVPKRSQPRKRGFN 505

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFS 557
             L+                   +L  
Sbjct: 506 RVLLAMQQGYGRSLKWVLNHARWVLLL 532



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 71/223 (31%), Gaps = 10/223 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            ++R             +   + +    +     +   +   P I   L       +I  
Sbjct: 283 VMIRRAPDANIITTVDNIRAAMPELRAGLPAEIQLDIAQDRSPTIRASLAEVEQSLIIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           A+ +L+                 + + +  T     L G   N  ++ A+    G+ V+D
Sbjct: 343 ALVILVVFLFLRSARATAIPALAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
            +VV + +    +     +       + + E     +  S++     +P+ +     G +
Sbjct: 403 AIVVLENI---SRHIEAGMKPLQASLQGVREVGFTVLSMSLSLVAVFIPLLLMDGLPGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA----PILLFIYDWRAKNAR 832
              FA+ ++  I+++   S+ +       +L  +        R
Sbjct: 460 FREFAVTLSVAIMISLLISLTLTPMLCARLLRAVPKRSQPRKR 502


>gi|168236290|ref|ZP_02661348.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194735845|ref|YP_002115219.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|226700784|sp|B4TNI7|MDTC_SALSV RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|194711347|gb|ACF90568.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290554|gb|EDY29909.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 1026

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 170/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLVISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRRRFSR 1017



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       VI  A
Sbjct: 284 MIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEVEETLVISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|300776210|ref|ZP_07086069.1| multidrug efflux pump BpeF [Chryseobacterium gleum ATCC 35910]
 gi|300505343|gb|EFK36482.1| multidrug efflux pump BpeF [Chryseobacterium gleum ATCC 35910]
          Length = 1060

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/540 (12%), Positives = 144/540 (26%), Gaps = 35/540 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
              +  FP   P +             +         + V   +    +E  + ++    
Sbjct: 29  NLPIALFPDIAPPS-----------VQVTAFYPGANAEVVARSVATPIEEAVNGVENMTY 77

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              +        +++ F      +N A  V   +    S+L  +  +  + T   +   I
Sbjct: 78  MTSNSSNDGTMTLSVFFKQGADADNAAVNVQNRVSKAMSQLPQEVVQAGISTQKVQNSMI 137

Query: 146 VLSQNNIDQV-ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +      +       +     +    I QI       Q          +     P RL  
Sbjct: 138 MFMGLTSEDAKQYDELFLQNYLKINVIPQIQRIPGVAQAQVFGTRDYSMRIWLKPDRLAA 197

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              +  ++       N        G       +                          K
Sbjct: 198 NNLSPQEVLGAIKDHNLEAAPGRLGQGSKETYEYILKYKGKL----------------NK 241

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
                                    +            +    +        A  + N  
Sbjct: 242 GEDYENIAIKANSDGSFLRLKDVARVEFGSYTYTATNRVDGKPVAGFAILQTAGSNANEI 301

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           +        ++          I+   +      S      T  I   LV IV+++ +   
Sbjct: 302 LTEIEKQVKVMETTLPKGVKPIIMYNSKDFLDASIHQVVETLVIAFILVFIVVYIFLQDF 361

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   ++ + +I T   L L G ++ + ++  +VL IG+ VD  I+V E +  +  +
Sbjct: 362 RSTLIPAIAVPVAIIGTFFFLQLFGFSINMLTLFALVLAIGIVVDDAIVVVEAVHSKMEQ 421

Query: 445 -NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISM 500
               V  +     S     I    +      + + F  G      R FA T+ ++ILIS 
Sbjct: 422 TGMPVEHATMNSMSEISGAIISITLVMCAVFIPVGFMQGPAGVFYRQFAFTLAIAILISA 481

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
             A+++  A+    +   + +  +      F             +       S+ F I +
Sbjct: 482 VNALTLSPALCAMFLNDPQGEHGEHGHKKGFGARFFNAFNASFNSMTRKYIYSLKFLIKN 541



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V            + +           LQ    ++      +E   K +   +P     
Sbjct: 263 DVARVEFGSYTYTATNRVDGKPVAGFAILQTAGSNANEILTEIEKQVKVMETTLPKGVKP 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                        I + +  ++I+ I + I ++I    +   L     + + I  T  F 
Sbjct: 323 IIMYNSKDFLDASIHQVVETLVIAFILVFIVVYIFLQDFRSTLIPAIAVPVAIIGTFFFL 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   N+  + A++  IG  V+D +VV + +    K+  T +        S++E  G 
Sbjct: 383 QLFGFSINMLTLFALVLAIGIVVDDAIVVVEAVH--SKMEQTGMPVEHATMNSMSEISGA 440

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  ++      +P+    G        FA  +A  I+++A +++ ++  +     +
Sbjct: 441 IISITLVMCAVFIPVGFMQGPAGVFYRQFAFTLAIAILISAVNALTLSPALCAMFLN 497



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 64/222 (28%), Gaps = 9/222 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +N L       G         + +K                        E+   G    
Sbjct: 819  TRNNLFNAVTINGTPKPGYSTGDAIKAVEEVAQQSLPRGYGYEWTGITREEIKTSGQTAF 878

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I     + +Y  +      +      I T+   I     F  L GI+ N+     ++ L+
Sbjct: 879  IFFLSILFVYFLLAAQYESYVLPFAIILTIPTGIFGVFAFTGLAGIDNNIYVQVGLIMLV 938

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
            G    + +++ +     ++      S  +   ++    L   + TS A  + +LP+    
Sbjct: 939  GLLAKNAILIVEFA---VQRRKAGKSLIESALQASRLRLRPILMTSFAFIVGMLPLIWTQ 995

Query: 791  GSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G+              G++      IFI   + +       K
Sbjct: 996  GASSKGNHSIGYSTVGGMLTGVLFGIFIIPVMYVIFQYLHEK 1037


>gi|197361902|ref|YP_002141538.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|226700783|sp|B5BF68|MDTC_SALPK RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|197093378|emb|CAR58828.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 1026

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLEILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|328947128|ref|YP_004364465.1| acriflavin resistance protein [Treponema succinifaciens DSM 2489]
 gi|328447452|gb|AEB13168.1| acriflavin resistance protein [Treponema succinifaciens DSM 2489]
          Length = 1034

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/545 (10%), Positives = 166/545 (30%), Gaps = 44/545 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + +    +++++++  +G+       L  + +   P       +              E 
Sbjct: 7   LEHPVLTLMVFTLLGLMGIFS-----LGNTSVSLMPDVDMPYLM---------VSATYEN 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++    L        +  + ++ + L F      +   + V   L 
Sbjct: 53  AGPESVEKSVTTLIEDALVSLSNLKEITSTSSEGRSSVFLEFNYGTNLDIATNDVRDKLD 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +L  D     +         I+      ++ +    + +     Q +D +  ++  
Sbjct: 113 RITRRLPDDVT-PTIFKMDSDSQPIMRIAVRGNRSVDELKKIAE---DQVVDILEQAQGV 168

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  E + +RL+    T +++S                           
Sbjct: 169 GQAESMGGRTQIVRVELEQNRLQAYNLTLSEVSSSLSKQ--------------------N 208

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +       G          +  + + + +                           + 
Sbjct: 209 LEIGGGTITEGTMDYSVRTTGEYTSIEQINNTVITTKNGYDVKLSDIGRAFMGYKDASNV 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + ++  +            + L           +   +  +   + +
Sbjct: 269 VYINGLPGVYVSITKQSGENSVAVANAVYEKISELEKTLPADISLEIIRDDTESIRDTLN 328

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +      L +++LF+ +   K  ++   S+ L++I+T+  ++  G TL + ++ G+
Sbjct: 329 TLFDSAWQGLLLAVVILFVFLCAIKTTIIIAVSVPLSIIITVLCMNFAGITLNMMTLTGL 388

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
           +LG+G+ VD+++++ + I     +      +  +G S    ++   N+T +   +   F 
Sbjct: 389 ILGVGMVVDASVVMIDNIYSYRMRGAKPNVAAVLGSSEMILSVVSGNLTTICVFIPFLFF 448

Query: 480 -----FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
                F G   +G   T+ ++++ S+F AI +V  +    +         +       L 
Sbjct: 449 MKDLGFMGQMFKGIIFTIVIALVSSLFVAIFLVPVLAGHFLPITNRNEKPVKSRFFKVLY 508

Query: 535 PDCIA 539
                
Sbjct: 509 GIFTK 513



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/269 (11%), Positives = 81/269 (30%), Gaps = 19/269 (7%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS----VAQT 632
               +       V LS +       +              ++   +    +S     A  
Sbjct: 238 NNTVITTKNGYDVKLSDIGRAFMGYKDASNVVYINGLPGVYVSITKQSGENSVAVANAVY 297

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             +  ++K +   + L  I++           L      G++++ + + +++        
Sbjct: 298 EKISELEKTLPADISLEIIRDDTESIRDTLNTLFDSAWQGLLLAVVILFVFLCA---IKT 354

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +    ++ L I  T+      GI  N+  +  ++  +G  V+  VV+ D +        
Sbjct: 355 TIIIAVSVPLSIIITVLCMNFAGITLNMMTLTGLILGVGMVVDASVVMIDNI---YSYRM 411

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIGSFAIPMAFGIV 806
                        +E +   V  ++      +P         + G +       +   +V
Sbjct: 412 RGAKPNVAAVLGSSEMILSVVSGNLTTICVFIPFLFFMKDLGFMGQMFKGIIFTIVIALV 471

Query: 807 VAASSSIFIAAPI---LLFIYDWRAKNAR 832
            +   +IF+   +    L I +   K  +
Sbjct: 472 SSLFVAIFLVPVLAGHFLPITNRNEKPVK 500



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 80/241 (33%), Gaps = 10/241 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
               +  +          E    +        S     V+E   K+  +   +     +  
Sbjct: 786  ANFARAVKGYGPVTISRENRRRIVHVTADIVSDENANVVEEKIKEGIKNSFIVPDNVSVS 845

Query: 657  VGPKISRELIRKGIVG--VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
                      +  I    ++++ + +   +   ++ +      + T+       +  + +
Sbjct: 846  YEGSWKDVKEQTAIFAKIMVMAVLLVFGVMAATYESFKAPFINLMTIPFLAIGVVLIYKI 905

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G  F+L +   ++ L+G  VN+ +++ D       L    +  +D   K+    L   +
Sbjct: 906  TGQSFSLLSAVGLVMLVGIVVNNGIILVD---YTNLLVERGMPLKDACYKAGCSRLRPVL 962

Query: 774  YTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T++   + ++PM          +   ++ +  G+  +   ++F   P+L      + KN
Sbjct: 963  MTTLTTILGMIPMCFASSGSAGMVQPISVAVVGGLTSSTFITLFFI-PVLYTFVMKKKKN 1021

Query: 831  A 831
             
Sbjct: 1022 Q 1022


>gi|255746538|ref|ZP_05420485.1| protein-export membrane protein SecD [Vibrio cholera CIRS 101]
 gi|255736292|gb|EET91690.1| protein-export membrane protein SecD [Vibrio cholera CIRS 101]
          Length = 452

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 135/464 (29%), Positives = 239/464 (51%), Gaps = 25/464 (5%)

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             D ++  L+ E +    ++ + N    +F     +      V  +LQ        +  +
Sbjct: 1   MMDAVKDSLRAERLRGVVVQAMGND---AFEVKTEQPQALSHVRKYLQ--------ENYR 49

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
              +     ++ +  SQ N  +  +  I+Q+++I+R RI+++GI+E+ +QR G H I I+
Sbjct: 50  GWEIRQGSDQLQVQPSQQNKSEFQTATIQQNLKIMRDRIEELGITEALVQRQGEHAIRIE 109

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           LPG QDPS+ + ++G TA ++F++           +    L D +G   ++  +  +SG 
Sbjct: 110 LPGVQDPSQAKNVIGATASLAFYEAKS--PTDARSYDDLILEDGNGRPVILAKRPVLSGE 167

Query: 253 HLNGATANFDPKTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGR 301
           H+  A A  D      V        G            +    V R+         +   
Sbjct: 168 HIVNARAGVDNMGMSEVNISLDHAGGKIMSDFSGKHIGKPMATVYREYKTNARGETVRSE 227

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            + +    Q+    + +I+G  ++E A  LA +LRAGSL   + IVEER +GA LG ++I
Sbjct: 228 KVISVATIQSQLGSQFRITGAGSMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENI 287

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420
             G  A+  G+ + + FM + Y + G VA+ ++ +N+   L L++LL  A LTLP IAG+
Sbjct: 288 ANGFAALALGMAMTLTFMALWYRRLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGL 347

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +G+AVD+N+L+ ERIR++  + ++   ++D GF  A+STI D+NIT +I  V+L+  
Sbjct: 348 VLTVGMAVDTNVLIFERIRDKLSEGRNFAQAIDTGFDSAFSTILDANITTMITAVILYSI 407

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           G G ++GFA+T+GL +L SMF+ +   RA++  +      + + 
Sbjct: 408 GNGPIQGFALTLGLGLLTSMFSGVFASRALINLVWGRDTRRDVR 451



 Score =  119 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 81/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 250 SMEEAQQLALLLRAGSLTAPVTIVEERTIGASLGEENIANGFAALALGMAMTLTFMALWY 309

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L++++   LG  AL  G    L  +A ++  +G +V+  V++++R+R  
Sbjct: 310 R-RLGWVANVALLVNMACLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVLIFERIRDK 368

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +       +F   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 369 LSE---GRNFAQAIDTGFDSAFSTILDANITTMITAVILYSIGNGPIQGFALTLGLGLLT 425

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  S +F +  ++  ++    + 
Sbjct: 426 SMFSGVFASRALINLVWGRDTRR 448


>gi|207723427|ref|YP_002253826.1| multidrug efflux system transmembrane protein (partial sequence)
           [Ralstonia solanacearum MolK2]
 gi|206588628|emb|CAQ35591.1| multidrug efflux system transmembrane protein (partial sequence)
           [Ralstonia solanacearum MolK2]
          Length = 432

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/446 (11%), Positives = 115/446 (25%), Gaps = 37/446 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I  +GLL       P   + R+PS  P               + +   
Sbjct: 7   KRPVFAWVIALFIVLLGLLAI-----PNLPIARYPSVAPPT-------------VNISAT 48

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            +       I  +F            + 
Sbjct: 49  YPGATPQTMNDGVISLIERELSGVKNLLYFESSADSSGSASIVATFKPGTDPAMAQVDIQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ +  +L    ++N L   +     +++   N           S  + R  ++++  
Sbjct: 109 NKLKAIEPRLPQAVRQNGLSVESASSGFLMIIGLNSTDGRFDETALSDYMARNLVEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     +   +S      N        G       
Sbjct: 169 IEGVGKVQLFGA-EQAMRIWVDPAKLISYGLSMNDLSAAISQQNAQIAPGSVGASPSLPG 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + ++S                +    +        +        +      
Sbjct: 228 QRVTVPLTVQGQLS-------------TPEQFSAIVLRANADGSKVTMGNVARVELGAQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T          L           +         
Sbjct: 275 YGFINRENGKTATAAAVQLAPGANAVSTAAGVKARLDELSRTMPAGMNYSIPFDTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV +V+ + +   ++ L+      + ++ T A++ L G ++ + +
Sbjct: 335 ISIEKVVHTLLEAMALVFLVMLLFLQNVRYTLIPTIVAPIALLGTFAVMLLAGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREEN 442
           + G+VL IG+ VD  I+V E +    
Sbjct: 395 MFGMVLAIGIIVDDAIVVVENVERIM 420



 Score = 40.4 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           +R+     + A   L      T     L G   N+  +  ++  IG  V+D +VV + +
Sbjct: 362 VRYTLIPTIVAPIAL----LGTFAVMLLAGFSINVLTMFGMVLAIGIIVDDAIVVVENV 416


>gi|75676468|ref|YP_318889.1| acriflavin resistance protein [Nitrobacter winogradskyi Nb-255]
 gi|74421338|gb|ABA05537.1| Acriflavin resistance protein [Nitrobacter winogradskyi Nb-255]
          Length = 1031

 Score =  149 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 68/519 (13%), Positives = 162/519 (31%), Gaps = 25/519 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              +      D + GF+    ++  +  +       +  Q Q++I +    +        
Sbjct: 47  VTTIYPGASPDLMQGFITTPIEQAVASAEGVDYITSTSTQGQSQIKVYVKLNFDPNAALT 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +  V   +  +    +++ +T +  +++    + D++   AI  S  + R     
Sbjct: 107 EVLSKVNSVRYLIPKEANDPVILKSTGETTAVMYIGFSSDELSGSAI--SDYLTRVVQPI 164

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +              +    DP ++     TTA+++      N           + 
Sbjct: 165 LSTVDGVASADILGGQTFAMRVWLDPMKMAGRNVTTAEIAIAIAANNFQAAAGQTKGYYT 224

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                               ++  T N D ++ +    ++                +   
Sbjct: 225 --------------------ISNVTTNTDLQSVEQFKRMTVKAKDGGFVRMEDIATVELA 264

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                     +             Q +    +     L   +     P     V   +  
Sbjct: 265 AQSTNASVAFSGQRAIFIGVQATPQGNPLNIVAGVRALFPDIERNLPPSMKMKVAYDSTK 324

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T      +V++V+F+ +   +  ++   +I L++I   AL+   G +  
Sbjct: 325 FITSSIHEVQNTLIEAVLIVIVVIFLFLASLRSVIIPVVTIPLSLIGVCALMLAAGFSFN 384

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  +VL IGL VD  I+V E I     + +S   +   G       +    IT    
Sbjct: 385 LLTLLAMVLAIGLVVDDAIVVVENIHRHLEEGKSAVQASLQGAREIVGPVISMTITLAAV 444

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
              + F G   G   R FA T+  ++++S   A+++   M   ++++             
Sbjct: 445 YAPIGFLGGLTGALFREFAFTLAGAVIVSGVIALTLSPMMCSVLLKHGGQGWFATKVDRI 504

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           F  + D    +  R+  +    ++        + F +  
Sbjct: 505 FSSVTDWYGRKLDRSLDYRPVTALFAVTLLGLVGFLYMN 543



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/314 (10%), Positives = 101/314 (32%), Gaps = 15/314 (4%)

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
             AM +++   K              +  +       + + +    ++  +     +   
Sbjct: 181 TFAMRVWLDPMKMAGRNVTTAEIAIAIAANNFQAAAGQTKGYYTISNVTTNTDLQSVEQF 240

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +       G +++  +A   +      +++       I        +   + +     
Sbjct: 241 KRMTVKAKDGGFVRMEDIATVELAAQSTNASVAFSGQRAIFIGVQATPQGNPLNIVAGVR 300

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                  +   +++ +   + +    ++         E+    I  V+I  + + +++  
Sbjct: 301 ------ALFPDIERNLPPSMKMKVAYDSTKFITSSIHEVQNTLIEAVLIVIVVIFLFLA- 353

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                  +  + T+ L +          G  FNL  + A++  IG  V+D +VV + +  
Sbjct: 354 --SLRSVIIPVVTIPLSLIGVCALMLAAGFSFNLLTLLAMVLAIGLVVDDAIVVVENIH- 410

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
             +      S      +   E +G  +  ++       P+   G   G++   FA  +A 
Sbjct: 411 --RHLEEGKSAVQASLQGAREIVGPVISMTITLAAVYAPIGFLGGLTGALFREFAFTLAG 468

Query: 804 GIVVAASSSIFIAA 817
            ++V+   ++ ++ 
Sbjct: 469 AVIVSGVIALTLSP 482



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 59/155 (38%), Gaps = 6/155 (3%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + I + + +  +F+     L  + ++ + I   L          N+     +LTL
Sbjct: 848  IAFGFALIIIFLVLAAQFESLRDPLVIMISVPMAILGALIPLFFGVATINIYTQVGLLTL 907

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG      +++ +   +        +  R  I+K+    L   + T+ A    +LP+   
Sbjct: 908  IGLISKHGILMVEFANE--LQINEKLDKRAAIEKAARVRLRPILMTTAAMVTGLLPLLTA 965

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
               G +   S  + +  G+++    ++F+   + +
Sbjct: 966  SGAGAASRFSIGLVVVAGMMIGTLFTLFVLPAVYV 1000


>gi|168259538|ref|ZP_02681511.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205350702|gb|EDZ37333.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 1026

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTIALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G++++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLLMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|198245494|ref|YP_002216215.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|226700778|sp|B5FMU7|MDTC_SALDC RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|197940010|gb|ACH77343.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
          Length = 1026

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|161502715|ref|YP_001569827.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189081608|sp|A9MKW9|MDTC_SALAR RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|160864062|gb|ABX20685.1| hypothetical protein SARI_00764 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1026

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 172/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VRASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDSWSQGELYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRIGLNPQALFNQGVSLDEVRKAIDSANVRRPQGAIEDNVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYKNGAAVRLDDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+A         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPETNIIQTVDSIRAKLPELQAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLISTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENITRHLEAGMKPLQAALQGTQEVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQS 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTIALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLISTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---TRHLEAGMKPLQAALQGTQEVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFAGTAQVFQQTMNSQLILIMAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAAMFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|268589300|ref|ZP_06123521.1| multidrug resistance protein MdtC [Providencia rettgeri DSM 1131]
 gi|291315321|gb|EFE55774.1| multidrug resistance protein MdtC [Providencia rettgeri DSM 1131]
          Length = 1033

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/615 (12%), Positives = 164/615 (26%), Gaps = 38/615 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G L  L   +       +P       I++   L G          
Sbjct: 11  RPVATTLISVAITLCGALSFLFLPVSPLPQVDYP------VINVTASLPG--------AS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S    +  ITL F   +   N A +V   +   
Sbjct: 57  PETMASSVATPLERSLGSIAGISEMTSSSALGRTTITLEFNLDKDINNAAREVQAAINAA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L            +    + ++    +        E       +   +I   E   +
Sbjct: 117 QNLLPSGMPSRPRYYKSNPSDAPIMI-LTMTSETMGTGEIYDIASTRLAQRIAQIEGVSE 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P+ L     +   +       N  +          R        
Sbjct: 176 VSVGGGSLPAVRVELNPTALFNQGVSLDAVRSAISSANVRQPQGYINDDEKRYQVQTNDE 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                       I                N+   +  +    +
Sbjct: 236 LKKAAD--------------------YRPIIVHYSQGNAVKLSDVANVKDSIENIRAAGM 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +A  +   T+                     V +        S +  
Sbjct: 276 ADGKPAILIVIRREAGANIIETVNRIRAELPEFNDMIPAAIDLKVAQDRTPTIRASLAEV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V+ + +  G+  L+   ++ +++I T   + L G +L   S+  + +
Sbjct: 336 ERALLIAVALVILVVLLFLRSGRATLIPAVAVPVSLIGTFTAMYLCGFSLNNLSLMALTV 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +  F +   G      T+   +I+ +   + L     
Sbjct: 396 ATGFVVDDAIVVLENISRHIENGKKPFIAAVKGVHEVGFTVVSMSISLVAVFIPLLLMDG 455

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+  +I IS+  ++++   M  ++++ +       +      L+    +
Sbjct: 456 LVGRLFREFAITLATAIGISLVISLTLTPMMCAYLLKKRPRNVKAKHRGFGRVLLRLQES 515

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                        S+L  + +   L  +            Q        V      S   
Sbjct: 516 YGIALKWVLEHRRSVLAVLFATIGLNVYLYITVPKTFFPEQDTGRVLGFVRADQSISFQS 575

Query: 600 SLQIGDISFQNFDGE 614
             +      Q    +
Sbjct: 576 MKEKMTRFMQQVKAD 590



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 55/150 (36%), Gaps = 6/150 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T     L G   N  ++ A+    G+ V+D +VV + + 
Sbjct: 353 FLRSGRATLIPAVAVPVSLIGTFTAMYLCGFSLNNLSLMALTVATGFVVDDAIVVLENI- 411

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +             K ++E     V  S++     +P+ +  G V      FAI +A
Sbjct: 412 --SRHIENGKKPFIAAVKGVHEVGFTVVSMSISLVAVFIPLLLMDGLVGRLFREFAITLA 469

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             I ++   S+ +   +  ++   R +N +
Sbjct: 470 TAIGISLVISLTLTPMMCAYLLKKRPRNVK 499



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 91/217 (41%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D       +  ++K +T +   ST++ +     +I +E ++  +  ++ + + 
Sbjct: 804  TIAFNVADGYTLNDAIVEIEKTMTALGVPSTVRGSFAGTAQIFQETLQSQLFLILAAIVT 863

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + + I ++ +   L  ++TL       L    LF   F+L A+  V+ LIG    + +
Sbjct: 864  VYLVLGILYESYIHPLTILSTLPSAGVGALLALELFDTPFSLIALIGVMLLIGIVKKNAI 923

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D         T  ++ ++ I ++        + T++AA    LP+ +    G  +  
Sbjct: 924  IMVD--FAIQAQRTAGLTAQEAIFRASLLRFRPILMTTLAAIFGALPLMLGSGDGAELRQ 981

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G++++   ++F    + L     R +  R
Sbjct: 982  PLGITIVGGLIMSQLLTLFTTPVVYLSFDSLRQRWQR 1018


>gi|255693471|ref|ZP_05417146.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides
           finegoldii DSM 17565]
 gi|260620755|gb|EEX43626.1| hydrophobe/amphiphile efflux-1 family protein [Bacteroides
           finegoldii DSM 17565]
          Length = 1034

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/646 (10%), Positives = 175/646 (27%), Gaps = 44/646 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSFLKKE- 84
           L    +D++P   P               + +           +       +   +    
Sbjct: 28  LTMLPVDQYPQITPPV-------------VKISASYPGASALTVSQAVATPIEQEINGTP 74

Query: 85  GIGVFSMRQIQNKI---TLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
           G+         +     T++F  S   +  A ++   ++   S+L  +  +N +    + 
Sbjct: 75  GMLYMESNSSNSGGFSATVTFDVSADPDLAAVEIQNRVKLAESRLPTEVIQNGISVEKQA 134

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              ++             I  S       +D I       +          +     P +
Sbjct: 135 PSQLMTLCLTSTDPKFDEIYLSNFATINVLDVIRRIPGVGRVSNIGSRYYAMQIWAQPDK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L     T   +       N      + G + ++  D                +   T   
Sbjct: 195 LANFGLTVQDLQNALKDQNRESAAGVLGQQPVQGLDIT--------------IPITTQGR 240

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +    +                 +    +       +                + 
Sbjct: 241 LSTVGQFEDIVVRANANGSIIRLRDVARVSLEASSYNTESGINGENAAVLGIYMLPGANA 300

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E      A +           +          S      T      LV++V+++ +
Sbjct: 301 MEVAERVKEAMAEISKNFPEGLSYEIPFDMTTYISESIHEVYKTLFEALVLVVLVVYLSL 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  L+   ++ +++I T   + + G +L + ++ G++L IG+ VD  I+V E +   
Sbjct: 361 QSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGIVVDDAIVVVEGVEHI 420

Query: 442 NRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSIL 497
               + S + +     +   S +  +++      V + F     G   R F +T+ +S+L
Sbjct: 421 METEKLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGITGQLYRQFTVTIVVSVL 480

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ-------FMRARFWGV 550
           IS   A+++   M   I++    K  +I        +                  R    
Sbjct: 481 ISTVVALTLSPVMCSLILKPDSGKKKNIVFRKINEWLGIGGNKYVAAVTRTIKHPRRVLS 540

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              ++     +           ++ +G  ++ +       L   R  +    I  +    
Sbjct: 541 AFGMVLIAIMLVHRIIPTSFLPVEDQGYFKIELELPEGATLERTR-IVTDRAIAYLEKNP 599

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +      +     + G +  +T +  ++K                +
Sbjct: 600 YIEYIQNVTGSSPRVGSNQGRTELTVILKPWEERKNTSIEKIMDTV 645



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 87/274 (31%), Gaps = 10/274 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  +                + V AN    +  +R                     
Sbjct: 226 VQGLDITIPITTQGRLSTVGQFEDIVVRANANGSIIRLRDVARVSLEASSYNTESGINGE 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK----GIVG 672
               L            V E VK+ + EI        +  +   ++  +           
Sbjct: 286 NAAVLGIYMLPGANAMEVAERVKEAMAEISKNFPEGLSYEIPFDMTTYISESIHEVYKTL 345

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +L+       W   L  +  + + +  T GF  +FG   N+  +  ++  IG 
Sbjct: 346 FEALVLVVLVVYLSLQSWRATLIPVVAVPISLIGTFGFMLIFGFSLNILTLLGLILAIGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG- 790
            V+D +VV + +     + T  +S  +   K++N      + TS+      +P+  + G 
Sbjct: 406 VVDDAIVVVEGV--EHIMETEKLSPYEATKKAMNGLASALIATSLVLAAVFVPVSFLSGI 463

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            G +   F + +   ++++   ++   +P++  +
Sbjct: 464 TGQLYRQFTVTIVVSVLISTVVAL-TLSPVMCSL 496



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W   +  + +L +          + G+E ++     ++ L+G +  + +++ +  +   
Sbjct: 888  SWTVPIAVLLSLPVAALGAYLGVWVCGLENDVYFQIGLVMLVGLAAKNAILIVEFAK--- 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                           +        + TS+A  + +LPM +    G +   +    + FG+
Sbjct: 945  VQVDKGEDLVQSAIYAARLRFRPILMTSLAFVLGMLPMVLASGPGSASRQAIGTGVFFGM 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A    I +     + +Y  ++K  +
Sbjct: 1005 IFAIVFGIILVPFFFVMVYKTKSKLLK 1031


>gi|120437717|ref|YP_863403.1| AcrB/AcrD/AcrF family membrane transporter [Gramella forsetii
           KT0803]
 gi|117579867|emb|CAL68336.1| AcrB/AcrD/AcrF family membrane transport protein [Gramella forsetii
           KT0803]
          Length = 1043

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/655 (10%), Positives = 167/655 (25%), Gaps = 43/655 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKK- 83
            L    + ++P   P               + +           + +     +   L   
Sbjct: 26  GLSNLPITQYPDIAPPT-------------VSVSTSYPGANAETVLESVIIPIEEQLNGV 72

Query: 84  EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           EG+   S     N   +IT+ F      +  A  V   +   N  L  + K+  + T  +
Sbjct: 73  EGMTYLSSTATNNGTAEITVFFDQDVDPDIAAVNVQNRVARANPLLPAEVKQTGVTTQKQ 132

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
           +  +++      +            +    I +I                  +     P 
Sbjct: 133 QTSALMFFSVFSNNEDYDDTFIQNYLKINVIPEIQRVNGVGNVQVFGGKDYAMRIWLQPD 192

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           +L       + +       +        G     + +   Y ++     +          
Sbjct: 193 KLAAYNLVPSDVIGALNEQSLEAAAGSLGE---NNGEAFSYTIKYSGRYNSEEQYSD--- 246

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
                      +                 I         G                   +
Sbjct: 247 ----------IVIKAMGNGEFLRLKDVAKIELDAQSYSGGSKTRGLPAVNMGVFQTKGSN 296

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
               I       A +           V          S +    T      LV +V+F+ 
Sbjct: 297 ARDIILEIEDRLAEIEKDLPAGMELYVPYNTNEFLNASINKVTTTLIEAFILVFLVVFVF 356

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           +   +  L+   ++ +++I T   L+L G ++ L ++  +VL IG+ VD  I+V E +  
Sbjct: 357 LQDFRSTLIPAIAVPVSIIGTFFFLNLFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHS 416

Query: 441 ENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSI 496
           +  +  +S   +           I    +      + + F     G     F IT+ ++I
Sbjct: 417 KLDEGAKSAKKATIDAMHEISGAIVSITLVMAAVFIPVTFIKGPTGVFYEQFGITLIVAI 476

Query: 497 LISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
            IS   A+++  A+          + K  KS        F    +    ++ R+  +   
Sbjct: 477 FISAVNALTLSPALCALFLKTHDEKEKSKKSFLQRFYDAFNKGFNATIERYGRSLSFLYK 536

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
              + ++  I  +            G +         V++ +                  
Sbjct: 537 NKWITALILIVAVGGIWWASSSTPSGFVPDEDRGLIFVNIELPAGASIDRTQEVNDLLYN 596

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +    +                        ++    +    E+    ++ +L 
Sbjct: 597 KVKDMDGIEGVSIISGRSLINGAGSNYGLGFIKLDNWDSRDTDELSIESLTGKLF 651



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 58/165 (35%), Gaps = 9/165 (5%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I     + +Y  +      +      + +L L +          G++ N+    A++ LI
Sbjct: 874  IFLLSIVFVYFLLAAQYESYLLPFSVLLSLPLGVFGAYITTKFAGLQNNIYFQIALIMLI 933

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ +     ++      S  D         L   + TS A  + +LP+ +  
Sbjct: 934  GLLAKNAILIVEFA---IQRRRNGESIADAAIHGAKARLRPILMTSFAFILGLLPLVLAT 990

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G     S     A G+++   + +F+   + +     + K  +
Sbjct: 991  GVGAEGNRSIGTGAAGGLLIGTVTGVFVIPILFILFQWLQEKIGK 1035


>gi|56412972|ref|YP_150047.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|81359735|sp|Q5PDW8|MDTC_SALPA RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|56127229|gb|AAV76735.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
          Length = 1026

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLEILYESYVHPLTILSTLPSASVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|330824002|ref|YP_004387305.1| acriflavin resistance protein [Alicycliphilus denitrificans K601]
 gi|329309374|gb|AEB83789.1| acriflavin resistance protein [Alicycliphilus denitrificans K601]
          Length = 1038

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/612 (12%), Positives = 174/612 (28%), Gaps = 40/612 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P                    +     
Sbjct: 10  RPIATSLLMVAILVAGMLA-----YRLLPISALPEVDYPTIQ---------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL FA     +    +V   +   
Sbjct: 56  PDVMTSNVTAPLERQFGQMPGLAQMSSTSSGGASVITLRFALDYGLDVAEQQVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     L +      + +L+   +       I  +  +  +   ++        
Sbjct: 116 ANLLPGDLPMPPLYSKVNPADAPILT-LAVTSPSLPVIRINDLVENRLAPKLSQVGGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L  +  +   +       N  +                   
Sbjct: 175 VAIAGGRRPAVRIQANPQALASVGLSLEDLRGAIAAANVKQPKG---------------G 219

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +  +  + I  N    +        +   + + +      +   D     LA       
Sbjct: 220 FDGPLRATTIDANDQLQSAQEYRDLIIAYRNGNPVRLSAVADTVDDAENTRLAAWAGTPD 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +          +   +   T++    L   L           V          S    
Sbjct: 280 DGSKAAVILNIKRQPGANVIETVDRVKALLPQLEETLPASLQVHVLTDRTVTIRASVRDM 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV+ V+F+ +  G   L+  F++ L++I T  ++ L G ++   ++  + +
Sbjct: 340 QHELLLAVALVVAVIFVFLRSGTATLIPSFAVPLSLIGTFGVMYLAGFSINNLTLMALTI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I       +    +   G  +   TI    I+ +   + L F G 
Sbjct: 400 STGFVVDDAIVMIENIARYVEAGEPPLAAALKGARQIGFTIISLTISLIAVLIPLLFMGD 459

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAITM +SILIS   ++S    +   ++R+   +S      +        IA
Sbjct: 460 VVGRLFHEFAITMAVSILISAVISLSFTPMLCARLLRHTPEESHSRLYQATGRFFERTIA 519

Query: 540 IQFM-------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +                +      ++ ++  L      + +   G +Q   +A++ +  +
Sbjct: 520 LYGRTLGVVLEHRMLVWLVFLATLALTALLYLVVPKGFFPVQDTGTLQATTVADQSISFA 579

Query: 593 VVRSNLESLQIG 604
            +    + +   
Sbjct: 580 AMAERQQQMAER 591



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 77/237 (32%), Gaps = 9/237 (3%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              VD +            D   +                        +L  +++ +   
Sbjct: 260 ADTVDDAENTRLAAWAGTPDDGSKAAVILNIKRQPGANVIETVDRVKALLPQLEETLPAS 319

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
           + +  + +  +      R++  + ++ V +    + +++         L     + L + 
Sbjct: 320 LQVHVLTDRTVTIRASVRDMQHELLLAVALVVAVIFVFL---RSGTATLIPSFAVPLSLI 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G   L G   N   + A+    G+ V+D +V+ + +    +             K  
Sbjct: 377 GTFGVMYLAGFSINNLTLMALTISTGFVVDDAIVMIENI---ARYVEAGEPPLAAALKGA 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     +  +++    ++P+   G   G +   FAI MA  I+++A  S+     +
Sbjct: 434 RQIGFTIISLTISLIAVLIPLLFMGDVVGRLFHEFAITMAVSILISAVISLSFTPML 490



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 86/247 (34%), Gaps = 6/247 (2%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             PV LS +    E      ++                      A   +         +  
Sbjct: 783  TPVPLSSLARVEERSMALAVNHVGQLPASTISFNTAPGVSLGQAVKAIERARDDLRAQGQ 842

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDIT 705
               ++           +  +   ++ ++ + I M I + + ++     +  ++TL     
Sbjct: 843  MPISVDMAFQGAALAFQASLTNTLLLILAAVITMYIVLGVLYESTIHPVTILSTLPSAGV 902

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L    + G+E ++ AV  ++ LIG    + +++ D      +     +S R+ I ++ 
Sbjct: 903  GALLALGMAGLEIDIIAVIGIVLLIGIVKKNAIMMIDFALDAQRE--QGLSAREAIYQAC 960

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + T++AA +  LP+ +    G  +     + M  G++++   ++F    I L 
Sbjct: 961  LLRFRPILMTTLAALLGALPLMLGQGVGSELRHPLGVTMVGGLILSQLLTLFTTPVIYLT 1020

Query: 823  IYDWRAK 829
               W  +
Sbjct: 1021 FEGWAQR 1027


>gi|319760367|ref|YP_004124305.1| protein-export membrane protein SecD [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039081|gb|ADV33631.1| protein-export membrane protein SecD [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 617

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 152/539 (28%), Positives = 271/539 (50%), Gaps = 41/539 (7%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAM---PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
               +     +      +   P+ +       I LGLDL+GG +L++ VD    +N    
Sbjct: 92  VLFSIFSENFSV-SCLKIPDMPNWLYLIGAKPIQLGLDLKGGLYLIIRVDIQTMLNKLQD 150

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
            Y +  +S L +  I    + +I +  + + F ++         +        SK+  + 
Sbjct: 151 YYFNNFKSILNENNIFYLRLNKINDYDLKIVFENA--------DIRNKSILYLSKIYPEL 202

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
              +  T  E  + I  S+  I  +  +AI+Q+  I+R RI+Q+ I+E  I R GS  I+
Sbjct: 203 ---IFYTKEECIVCISFSKEYIHTMCEYAIQQNSNILRHRINQLQITEPLIHRYGSDCIV 259

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLP-----NNSKKGFMFGVRFLRDSDGNQYLVED 245
           I+LPG QD S+++ +    A + F  V         +            DS+GN   +  
Sbjct: 260 IELPGIQDSSKIKTIFNNAASLEFRLVNTKINEFQINNNFIPEDSEIKLDSNGNIIALYK 319

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK------------- 292
           KV ++G H+ GA  NFD   H+P V+I  D +G+    + T+DNIGK             
Sbjct: 320 KVILTGDHIIGANLNFDEY-HRPRVNILLDNLGSLIISKFTQDNIGKVMATLFVEYKDTG 378

Query: 293 -----PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
                  +++     +      Q+  S    I G   ++ A  L+++L  GSL   + I 
Sbjct: 379 EKDKQGYSILYRYDKVINIATIQSKLSHNFCIIGINNVKEARYLSSLLSMGSLIAPIYIE 438

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           EER +G  LG  +I +G  A V G+++ + FMI  Y  +GL+A  ++ +N+IL ++L+SL
Sbjct: 439 EERVIGPTLGKKNIAQGITACVLGILISIFFMITWYRFFGLIAGVALIVNLILMVSLMSL 498

Query: 408 LGATL-TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           +   + T+PSIAG++L + +++DSN+L+NERI+EE ++ + +  S+ +G+ +A+++I D+
Sbjct: 499 IPGVILTMPSIAGVILTLAVSIDSNVLINERIKEEIKQGKPMQYSIYVGYRKAFTSIIDA 558

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           NIT +I +++L+    G ++GFA+   + +  SMFT+I   RA +  I   + +K + I
Sbjct: 559 NITTIIVSIILYIISTGPIQGFAMVTIIGVGTSMFTSIIGTRAFVNLIYGKRYIKKLSI 617



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 92/244 (37%), Gaps = 5/244 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D         S+        N    ++ L       G +  +          +  
Sbjct: 371 FVEYKDTGEKDKQGYSILYRYDKVINIATIQSKLSHNFCIIGINNVKEARYLSSLLSMGS 430

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I+   ++GP + ++ I +GI   ++  +  + ++   +++ F L A   LI+++
Sbjct: 431 LIAPIYIEEERVIGPTLGKKNIAQGITACVLGILISIFFMITWYRF-FGLIAGVALIVNL 489

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +   +L  G+   + ++A V+  +  S++  V++ +R+++ +K        +  I  
Sbjct: 490 ILMVSLMSLIPGVILTMPSIAGVILTLAVSIDSNVLINERIKEEIKQ---GKPMQYSIYV 546

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +     +  ++   I  + + +     I  FA+    G+  +  +SI      +  I
Sbjct: 547 GYRKAFTSIIDANITTIIVSIILYIISTGPIQGFAMVTIIGVGTSMFTSIIGTRAFVNLI 606

Query: 824 YDWR 827
           Y  R
Sbjct: 607 YGKR 610


>gi|224539827|ref|ZP_03680366.1| hypothetical protein BACCELL_04737 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518573|gb|EEF87678.1| hypothetical protein BACCELL_04737 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1058

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/623 (10%), Positives = 174/623 (27%), Gaps = 58/623 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G +      L    ++++P   P               + +  + 
Sbjct: 9   RPVFSGVISVVIVLMGFIA-----LSNLPVEQYPDIAPPT-------------IQVFANY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVTL 117
                  +Q      L   +   E +   +     N    I + F      +  A  V  
Sbjct: 51  PGANAETVQKSVVVPLEESINGVEDMTYITSTASNNGDAMINVYFKQGSNADMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L  +  K  + T  ++   +                 +  +      +I   
Sbjct: 111 RVSTALSLLPAEVTKVGVTTMKQQNAELKTFSLFDPTGKYDLQFLNNYMKINVEPRIKRI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +            + P ++ Q     + ++      N       FG        
Sbjct: 171 GGVGNMMLFGSNYSMRIWMK-PDKMAQYGLIPSDITAMLERQNIEAATGAFGENHDNAYQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                        +    +                ++       
Sbjct: 230 ----------------YTMKYRGRYSTPEEFGELVVRSLPSGEVLRLNEVADVELGDEAY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +       A+   KA  + + TI     +   L          +           
Sbjct: 274 NYSTEMNGHPAAMAMIYQKAGSNASETINEIDAVLDELGKDLPKGLEFVTLNDTNIFLKA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S  +   T      LV++V+++ +   +  L+    I ++++ T A ++++G ++ L ++
Sbjct: 334 SIKVVLKTLLEAILLVVLVVYVFLHDIRSTLIPTIGIVVSIVGTFAFMAVVGFSVNLITL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG  VD  I+V E ++        S + + +       S I  S +  +   + 
Sbjct: 394 FALVLAIGTVVDDAIIVVEAVQARFDIGYRSSYMATNDAMRSVASAILTSTLIFMAVFIP 453

Query: 477 LFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------------KK 519
           +   GG +    + F ITM +++ IS   A ++  A+   ++                + 
Sbjct: 454 VSMMGGTSGEFYKQFGITMAVAVGISAINAFTLSPALCALLLHPYKDEQGNTKNNFAARF 513

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
             + +    +        +     R       +++   +    +  T       +  G +
Sbjct: 514 RTAFNAAFDAITSRYMRSVLFLVKRKWLMWGTLAVSMILLVFLVRTTKTGLVPDEDTGSV 573

Query: 580 QLGVLANRPVDLSVVRSNLESLQ 602
            + + A     ++  R  ++ + 
Sbjct: 574 MISMNAKPGTSMAENRRIMQEVN 596



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 57/138 (41%), Gaps = 5/138 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     +++ I  T  F A+ G   NL  + A++  IG  V+D ++V + ++   
Sbjct: 359 DIRSTLIPTIGIVVSIVGTFAFMAVVGFSVNLITLFALVLAIGTVVDDAIIVVEAVQARF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
            +     S     + ++       + +++      +P+++ G   G     F I MA  +
Sbjct: 419 DIGYR--SSYMATNDAMRSVASAILTSTLIFMAVFIPVSMMGGTSGEFYKQFGITMAVAV 476

Query: 806 VVAASSSIFIAAPILLFI 823
            ++A ++  ++  +   +
Sbjct: 477 GISAINAFTLSPALCALL 494



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 78/276 (28%), Gaps = 16/276 (5%)

Query: 560  SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
                +                          L+      ++    D+S  N     +   
Sbjct: 767  YRVQIQADPTYRVTPESLNHIYVRTGEGMTPLAQFVQLTKTYGPQDMSRFNLYNSISVNG 826

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                      A   V E  +K +           +       +        V +I +   
Sbjct: 827  TPASGYSSGDALKAVQETAEKLLPANYAYEFGGISREESQTTNN-------VAIIFAICM 879

Query: 680  MLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +LIY+    +          I ++      +  F  + G+E N+     ++ LIG     
Sbjct: 880  VLIYLILCALYESLLIPFSIILSVPCGFLGSFLFAQILGLENNIYMQTGLIMLIGLLAKT 939

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             ++  +     ++     +S       +  + L   + T MA    +LP+ +    G + 
Sbjct: 940  AILQTE---YAVQRRKAGMSLLQAAYVAAKDRLRPILMTVMAMIFGLLPLMMAHGVGANG 996

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              S A  +  G+++   + +     + +     + K
Sbjct: 997  CRSLASGVVGGMLIGTLALLLFVPVLFIVFQYLQEK 1032


>gi|168229454|ref|ZP_02654512.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470309|ref|ZP_03076293.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194456673|gb|EDX45512.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335694|gb|EDZ22458.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 1026

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTIALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|255692887|ref|ZP_05416562.1| AcrB/AcrD family multidrug resistance protein [Bacteroides
           finegoldii DSM 17565]
 gi|260621336|gb|EEX44207.1| AcrB/AcrD family multidrug resistance protein [Bacteroides
           finegoldii DSM 17565]
          Length = 1142

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 72/527 (13%), Positives = 147/527 (27%), Gaps = 44/527 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + ++   
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVKATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +         +I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSTASNTGSGEISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLVVFSLYDETDTYSESFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q       +S      N       FG    R + 
Sbjct: 171 PGVGDANVLG-QDYSMRIWLRPDVMAQYKLVPGDVSAALAEQNVEAAPGQFGE---RSNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPDGEVLRLKDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               +          
Sbjct: 274 NFTNRVDGHKSVTCIVYQMAGTNATQTISDIEQLLDEASKTLPTGLKLNISMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFILSLVGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   V 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMAVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   R F +TM ++I +S   A+++  A+   +++  K 
Sbjct: 454 VSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAILLKPHKK 500



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 61/200 (30%), Gaps = 23/200 (11%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDI 704
               E+ G             G+I     + +Y+ +      +   L  + +    L+   
Sbjct: 925  YTYELGGMAREEAQSSGSATGLIFVLCFVFVYLLLSAQYESYILPLAVLLSVPFGLLGSF 984

Query: 705  TKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                G  AL  I      +           A++ L+G    + +++ +     +      
Sbjct: 985  LFVNGVSALGNISALKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA---LDRRKMG 1041

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAFGIVVAASS 811
            +S            L   + TS+A  + +LP+   +G       +       G+++    
Sbjct: 1042 MSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIGGMLIGMIC 1101

Query: 812  SIFIAAPILLFIYDWRAKNA 831
             IFI   + +     + K  
Sbjct: 1102 QIFIVPVLFVIFQYLQEKVK 1121



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 53/488 (10%), Positives = 143/488 (29%), Gaps = 22/488 (4%)

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 ++ G + +    I  Y                 + + +           I G+ 
Sbjct: 15  VISILIVILGAIGLATLPITQYPDIAPPTVSVKATYTGASASTVLNSVIAPLEEQINGVE 74

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI------------- 468
             + +   ++   +  I    ++      +     +R                       
Sbjct: 75  NMMYMTSTASNTGSGEISIYFKQGTDPDMAAVNVQNRVSMAQGLLPAEVTKVGVTTQKRQ 134

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T+++    L+         F        LI     +  V    +    Y     +  + +
Sbjct: 135 TSMLVVFSLYDETDTYSESFIENYAKINLIPQVQRVPGVGDANVLGQDYSMRIWLRPDVM 194

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA--- 585
           +++ L+P  ++                                    +    + + +   
Sbjct: 195 AQYKLVPGDVSAALAEQNVEAAPGQFGERSNQTFQYTIRYKGRLQQPEEFENIVIKSLPD 254

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              + L  +          + + +    +    +  Q    ++      +E +  + ++ 
Sbjct: 255 GEVLRLKDIAEIQLDRLGYNFTNRVDGHKSVTCIVYQMAGTNATQTISDIEQLLDEASKT 314

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
           +P     N  +         I + +  +I + I + I ++I        L     + + +
Sbjct: 315 LPTGLKLNISMNANDFLFASIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVAL 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T    +L G   NL  + A++  I   V+D +VV + +   +    TS     +   +
Sbjct: 375 IGTFFILSLVGFSLNLLTLCALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASI--DA 432

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +NE  G  V  ++      +P++  GG+       F + MA  I ++A +++ ++  +  
Sbjct: 433 MNELGGAIVSITLVMMAVFVPVSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCA 492

Query: 822 FIYDWRAK 829
            +     K
Sbjct: 493 ILLKPHKK 500


>gi|197251789|ref|YP_002147089.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|226700777|sp|B5EXV8|MDTC_SALA4 RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|197215492|gb|ACH52889.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 1026

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|307730165|ref|YP_003907389.1| acriflavin resistance protein [Burkholderia sp. CCGE1003]
 gi|307584700|gb|ADN58098.1| acriflavin resistance protein [Burkholderia sp. CCGE1003]
          Length = 1040

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 79/621 (12%), Positives = 171/621 (27%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I  +GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLVGLVALRFLPLSALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F      +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGSSIITLQFNLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +L+   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPILT-LAITSKTLPLTQIQDLADTRLAQKISQVGGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGQRPAVRIQANPRALAAYGLNLDDLRTTISNLNVNTPKGNF------DGPTRNYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I +       G  
Sbjct: 229 INANDQLTDAD--------------AYKSAVVAYKSGRPVMLTDVATIVQGAENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   L+          V          S    
Sbjct: 275 VDGTPAIILNVQRQPGANVIQVVDNIKKLLPQLQQSLPAALEVQVVTDRTTTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELAMSVVLVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGESPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   I 
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPHESHRFEARAHRAIDWVIA 514

Query: 539 ------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R       +   + ++  +F     + +   G IQ    A + V  +
Sbjct: 515 RYAVALTWVLDRQRSTLAVAVLTLVLTALLYVFIPKGFFPVQDTGVIQAITQAPQSVSYA 574

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    + L    +   +   
Sbjct: 575 SMAERQQELAAQILKNPDVQS 595



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    L G   +  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGESPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAVVSLTLVP 483


>gi|163747492|ref|ZP_02154843.1| AcrB/AcrD/AcrF multidrug efflux pump [Oceanibulbus indolifex
           HEL-45]
 gi|161379248|gb|EDQ03666.1| AcrB/AcrD/AcrF multidrug efflux pump [Oceanibulbus indolifex
           HEL-45]
          Length = 1039

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/627 (11%), Positives = 172/627 (27%), Gaps = 47/627 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L ++I   G+          + +   P+                        
Sbjct: 24  RRPILAFVLNALIVLAGVAALF-----GAEIRELPNVDRPVVT---------VTTTFSGA 69

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  L    +     +        + R  ++++TL F DS   +  A  V   +  
Sbjct: 70  SPESVDQELTGRIEGAVGRVSGVRAISSNSRFGRSRVTLEFNDSTDIDVAATDVRDAVAR 129

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L    ++  +V        ++        +     E +  +  +  D++       
Sbjct: 130 ILNQLPDGAEQPQIVKADANAQPVMRIAVTS--MGRSPEELTKLVQDRVEDRLISVNGVA 187

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D   L     T   +                       +     
Sbjct: 188 DLQIYGDREPFFRVDIDQLELASRGLTLGDIQRALADVAYDAPAGDLAGDRQSINVRTTA 247

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V        + +                                   +    A      
Sbjct: 248 SVATTQAFEAMEIKEN------------------------VRLGDVAQVTLGPAKGETIL 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                +        +A  +          + A L           V   +     GS   
Sbjct: 284 RANGQLGLGIGIIRQATSNTLEISNDVRAVVAELNGTLPEDVRIFVTSDDATFISGSIRE 343

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A   G+V+ V+F+ +   +  L+   ++ + +I TLA + L+G ++ + ++  +V
Sbjct: 344 VLSTLAFAVGIVVAVIFIFLRDFRATLIPALTLPVALIGTLAAIYLVGFSINILTLLALV 403

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  G+ VD  I+V E I  +         +  +G S+ +  +  +  T     + L F  
Sbjct: 404 LATGMVVDDAIVVLENIVRQRAAGMGPRAAAVLGTSQVFFAVVTTTATLAAVFIPLSFLP 463

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP----LSRFFLI 534
              GG  R F  T+ +++++S   A+S+   +   ++     ++            F L 
Sbjct: 464 GQAGGLFREFGFTLAIAVMLSSVVALSLCPVLASRLLTRPAAENPRGPVVALGNGLFRLY 523

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +           +  + +     +            + +    L V A + V L   
Sbjct: 524 AATLRWALAMPYVVVLIAAFVALTAVLVSGEIRQELTPREDRAVALLSVTAPQGVSLEYT 583

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRL 621
           +S +  ++      Q      N     
Sbjct: 584 QSKMREIEDLITPHQEAGEVTNIFSIT 610



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 72/202 (35%), Gaps = 9/202 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S     V+  +   + E V +    +         RE++      V I    + I++   
Sbjct: 307 SNDVRAVVAELNGTLPEDVRIFVTSDDATFISGSIREVLSTLAFAVGIVVAVIFIFL--- 363

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +   L    TL + +  TL    L G   N+  + A++   G  V+D +VV + +   
Sbjct: 364 RDFRATLIPALTLPVALIGTLAAIYLVGFSINILTLLALVLATGMVVDDAIVVLENI--- 420

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
           ++     +  R       ++     V T+       +P++      G +   F   +A  
Sbjct: 421 VRQRAAGMGPRAAAVLGTSQVFFAVVTTTATLAAVFIPLSFLPGQAGGLFREFGFTLAIA 480

Query: 805 IVVAASSSIFIAAPILLFIYDW 826
           +++++  ++ +   +   +   
Sbjct: 481 VMLSSVVALSLCPVLASRLLTR 502



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 60/167 (35%), Gaps = 9/167 (5%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVL 727
             V    + + + + +  +F+ + +   +   +  +      FAL   G   N+ +   ++
Sbjct: 861  FVTFGFAILVVFLVLAAQFESFVSAIVVMATV-PLGLACAIFALLMTGQSLNVYSQIGLV 919

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG    + +++ +      +L        + I  +    L   + T  +  +  +P+ 
Sbjct: 920  MLIGIMAKNGILIVEFAN---QLRDQGADIHEAIFGASTIRLRPVMMTMTSTVLGGVPLI 976

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    G     +    +  G+ +A  S++++       +  +    A
Sbjct: 977  LSSGAGAEAREALGWVIVGGLGMATLSTLYLTPVAYFLLARFTTPKA 1023


>gi|262404897|ref|ZP_06081451.1| RND multidrug efflux transporter [Vibrio sp. RC586]
 gi|262348981|gb|EEY98120.1| RND multidrug efflux transporter [Vibrio sp. RC586]
          Length = 1036

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/655 (12%), Positives = 191/655 (29%), Gaps = 39/655 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLVQGFITQPLEQAVAQADNIDYMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      +++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKESEDPTVTMSTGSTTAVLYIGFTSEELASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  +   +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAALNMSATDVMSILNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+  + +     N         V ++      R         +           
Sbjct: 233 QVSTVGELENLVVKAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVV----------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 282 ---------AAINAAPSANPINIAKDVLEMLPELQKNMPSNIKMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSLRAVLIPIITIPLSLIGVAMVMQMMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVVAMTLTLGAVYAPIALMG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA+T+  ++ +S   A+++   M   +++  +  +     +          
Sbjct: 453 GITGALFKEFALTLAGAVFVSGIIALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTAR 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
             + + A      + I F+      L         +       GV+       S    + 
Sbjct: 513 YERMLSAVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVVMLMGTGPSNANLDY 572

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            +  + D++    D  +    ++     +S     +  MV     E         
Sbjct: 573 LANTMHDVNQILSDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQAEVTNR 627



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L  +     +             E            + +   + +  +  ++ + +
Sbjct: 251 NVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNM 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + I  ++ +A+ +L+ I +        L  I T+ L + 
Sbjct: 311 PSNIKMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIITIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  + G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     V  ++       P+A+ G   G++   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAIPVVAMTLTLGAVYAPIALMGGITGALFKEFALTLAGAVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +        +
Sbjct: 488 MLKANEAPNK 497



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 81/791 (10%), Positives = 208/791 (26%), Gaps = 36/791 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                      EL + +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 229  SADTQVSTVGELENLV--VKAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 286

Query: 126  LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                   N+     E    +   + S   ++ +    +  +    E+I+  ++   I   
Sbjct: 287  APSANPINIAKDVLEMLPELQKNMPSNIKMNVLYDSTVAINESIHEVIKTIVEAALIVLV 346

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 347  VITLFLGSLRAVLIPIITIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 404

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 D+    G     A      +   PVV ++           +     G        
Sbjct: 405  VLENVDRHIKEGESPFRAAIIGTREIAIPVVAMTLTLGAVYAPIALMGGITGALFKEFAL 464

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   V      +    +               L+   L  ++    ER + A +   
Sbjct: 465  TLAGAVFVSGIIALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLSAVMAHR 524

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
             +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 525  PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVVMLMGTGPSNANLDYLANTMHDVNQIL 584

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                 +            N+     +    S   +     +    T+        +    
Sbjct: 585  SDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQAEVTNRVGTLVKEIPGIAVTA-- 642

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             F        G  + +   I            A  I          +  +    F     
Sbjct: 643  -FQMPELPGAGSGLPIQFVITTPNSFESLFTIATDILTEVKSSPMFVYSDLDLNFDSATM 701

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
             I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 702  KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 761

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
            +       G +         + +   +  P  +   +  +  V    T +          
Sbjct: 762  NYYVRAADGKVIPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPSPGTAMGDAINWFENL 821

Query: 652  --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 822  ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   A      N+ +   ++TL+G      +++ +  ++        +S  D +
Sbjct: 882  LAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
              +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 940  MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 999

Query: 819  ILLFIYDWRAK 829
            I  ++ +    
Sbjct: 1000 IYSYLAEKHKP 1010


>gi|193222189|emb|CAL60278.2| putative Acriflavin resistance/Multidrug efflux transporter AcrB
           [Herminiimonas arsenicoxydans]
          Length = 1039

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/622 (12%), Positives = 175/622 (28%), Gaps = 44/622 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N    ++L+ ++   GLL         + +  FP                     L   
Sbjct: 9   KNPIPAIMLFVLLGLAGLLS-----FKSAAVQDFPDIELPIVT---------VSAALSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L+        +      +T+ F   +   +  + V   +  
Sbjct: 55  APAQLETEVARKIEDSVATLQGVKNIYTKVLDGLVTVTVEFILEKNLSDAVNDVRDAVAS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKE-ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           V + L  + +   +   +    + +  +            E S  +       I      
Sbjct: 115 VRADLPAELRDPTVTKASTAGRVVLTFTAAAAPGSALDEQELSWFVDNTVSKAILAVPGI 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   +  ++  E D +++  L      +S    L      G    V     S    
Sbjct: 175 GAVKRVGGVTREVRVELDTAKMAALNVAAVDVSRRLKLVQQEAPGGRGDVSGAEQSVRTI 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+   E++ + +                                   +   +A     
Sbjct: 235 ATVQTAAELAAMDI--------------------PLADGHHIRLDRVATVTDTIAERRSS 274

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +           S       +    A L+     +    +   N      +  
Sbjct: 275 ASQDGKTVVGFEIFRTKGASELEVANGSRAAVAALQERYPNVVF-KLAIDNAKPVEENFE 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L ++V++  +   +  LVA  ++ L+VI T   L+  G TL + ++  +
Sbjct: 334 ASMELLYEGAFLAVLVVWWFLRDWRATLVAAAALPLSVIPTFLGLAYFGYTLNMVTLLSL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+  E I    R  ++   +           +  +    +   +   F 
Sbjct: 394 ALVVGVLVDDAIVEIENISRHLRMGKTPMQAAMEAADEIGMAVIATTFALVAVFLPTAFM 453

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      + F  T  L+IL S+  A  +   M  +I++    +      L + +L    
Sbjct: 454 AGIPGLFFKQFGWTAVLAILASLLVARLLTPMMAAYILKPTAHREEKDGWLMQRYLKTMR 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL-----ANRPVDLS 592
             +          GI    SI  + LL T  +      +  I + +      A     + 
Sbjct: 514 WCLTHRLTTAIASGIFFFGSIMLVPLLPTGFVPAADRAQTQINVELPPGSTLAETTTVVE 573

Query: 593 VVRSNLESLQIGDISFQNFDGE 614
            VR+ +   +     F +  G 
Sbjct: 574 AVRTKIAENKNIKSVFASIGGG 595



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 6/242 (2%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + +     + L  V +  +++     S              + +    +         
Sbjct: 246 MDIPLADGHHIRLDRVATVTDTIAERRSSASQDGKTVVGFEIFRTKGASELEVANGSRAA 305

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
              + E  P    +        +         +    + +A+L+  W    W   L A  
Sbjct: 306 VAALQERYPNVVFKLAIDNAKPVEENFEASMELLYEGAFLAVLVVWWFLRDWRATLVAAA 365

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L L +  T    A FG   N+  + ++  ++G  V+D +V  + +    +      +  
Sbjct: 366 ALPLSVIPTFLGLAYFGYTLNMVTLLSLALVVGVLVDDAIVEIENI---SRHLRMGKTPM 422

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
               ++ +E     + T+ A     LP A   G        F       I+ +   +  +
Sbjct: 423 QAAMEAADEIGMAVIATTFALVAVFLPTAFMAGIPGLFFKQFGWTAVLAILASLLVARLL 482

Query: 816 AA 817
             
Sbjct: 483 TP 484



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 61/157 (38%), Gaps = 9/157 (5%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
           E+   +  + L     + + I  + +   + + FK +   +  +  L L I        L
Sbjct: 836 ELGDAQEMQALFNSFGLAMAIGVLCIYGVLVLLFKDFMQPVTILAALPLSIGGAFVALLL 895

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                ++ ++  ++ L+G    + +++ D     +      ++  D +  + ++     V
Sbjct: 896 TRSALSMPSMIGLIMLMGIVTKNSILLVD---YAILARKAGMNRVDALVDACHKRSRPIV 952

Query: 774 YTSMAAFISVLPMAV--WGGSVIGSFAIPMAFGIVVA 808
            T++A    +LP+A+   G     S   PMA  ++  
Sbjct: 953 MTTIAMGAGMLPLALGWVGDPSFRS---PMAITVIGG 986


>gi|160934729|ref|ZP_02082115.1| hypothetical protein CLOLEP_03604 [Clostridium leptum DSM 753]
 gi|156866182|gb|EDO59554.1| hypothetical protein CLOLEP_03604 [Clostridium leptum DSM 753]
          Length = 1312

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/831 (9%), Positives = 212/831 (25%), Gaps = 55/831 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +V+   M+  +G +  +         D  P+      +                 
Sbjct: 8   KKPFTVVVAVIMVFILGAVSFM-----NMTTDLLPNIELPYVV---------VSTTYAGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   S L           +  + + L F      ++ + +++  L  
Sbjct: 54  SPEKVESSVTKPMESALSTLSGVKSVSSISSENASIVMLEFEQGTNMDSASIEISNRLDQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V +K +       ++  +   + +++   ++D       E +  +    +  +   +   
Sbjct: 114 VKAKFDDGVGSPTMMRISPDMMPVMV--ASVDAGGKSVEEVTKLVNDTVLPALQRVDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +  QL    D  ++ +L     +    ++     +                  
Sbjct: 172 SVTASGLVEQQLKITLDQGKIDELNDRVLQAVDAQLYDAKKELDDAQAKLDEGRQQLESG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +++   +   +A            I   +               K         
Sbjct: 232 QEGAVSQLTAGSVQVDSAVAQLNALLAEDTILSSQKAGFETERAAYAGGLKQ-------- 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                                  +  A      L+     +   +    +  +     ++
Sbjct: 284 -------------------AQDGLAEAQAALTQLQQSYEAVNTGLQGLESFASTPTGAAL 324

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
           +           L+ L           V+          +L   SL   T  +  +   V
Sbjct: 325 FPNGLPASTVEELLSLSPEEFEAFRTAVSSIPTLGEAFASLTQDSLRQMTDGIAQLQETV 384

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
             +   +         I  E +  ++   +L     +    +  +              G
Sbjct: 385 DSLPGTIADAQARITEIDTELQNIKTRQATLAAMRPQLEEQLKAAQDGYEQLESGKLTAG 444

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
               +  A  +     +    A         F     +              +   I   
Sbjct: 445 SEFAQASAQIVSGQSQLDAAKA--------EFEQARDQALEKADISGVVTQEMISQILTA 496

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                  G   S       + +   +G    +       +G      + LS V S  ++ 
Sbjct: 497 QNFNMPAGYLDSESGQQYLVKVGEQYGSIEELQDSVLFSIGTEGIGDIRLSDVASVEQAS 556

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
             G+   +    E   L   +     +   ++ +     K+    P   I      G  I
Sbjct: 557 NAGEAYAKVNGNEGVVLSFQKQSTASTATVSQRINEAIGKLQSENPDLHIIPLMDQGDYI 616

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
           +  +       ++   +A+L+           +    ++ + +   +       I  N+ 
Sbjct: 617 NMIIQSVLQNLILGGILAILVLALFLRDVKPTVIIAFSIPISVLFAMVLMYFTDITLNII 676

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
           +++ +   +G  V++ +VV + +    +L    +       K   +  G    +++    
Sbjct: 677 SLSGLALGVGMLVDNSIVVIENI---YRLRNQGVPAAKAAVKGATQVAGAIFVSTLTTIC 733

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             LP+ V+   +       M   I  +  +S+ +A  ++  +     +  +
Sbjct: 734 VFLPI-VFTQGISRELFTDMGLTIAYSLLASLVVALTLVPAMGSTMLRKTK 783



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 83/232 (35%), Gaps = 10/232 (4%)

Query: 579  IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             ++ V   +  +   V  +  +      S  + + E            D+     ++   
Sbjct: 1051 HEISVTNQQTGETEAVPLHEIAEAQDAESVSSINRENQVRYMTVTAGVDNDHNIGLVSRE 1110

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA-I 697
             ++      +      EI G   +       ++ ++I    + IY+ +  ++   L   I
Sbjct: 1111 LEEKLAAYEVPEGYTVEIQGETETINSAMNDLI-LMIVLAVVFIYLIMVAQFQSLLSPFI 1169

Query: 698  TTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
                + +  T G  AL   G   ++ A+   L L G  VN+ +V  D +    +L    +
Sbjct: 1170 VMFTIPLAFTGGLLALWLTGSPISIIAMLGFLMLAGVVVNNGIVFVDYVN---QLRLEGV 1226

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
              +D + ++    L   + T++   ++++ MA+    G  +    AI    G
Sbjct: 1227 DKKDALIQTGRTRLRPILMTALTTILAMVTMALGLGDGAEMTQPMAIVTIGG 1278


>gi|16765458|ref|NP_461073.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167991046|ref|ZP_02572145.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|200387727|ref|ZP_03214339.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|60390144|sp|Q8ZNQ1|MDTC_SALTY RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|16420662|gb|AAL21032.1| putative resistance protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|199604825|gb|EDZ03370.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205330566|gb|EDZ17330.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261247343|emb|CBG25168.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994186|gb|ACY89071.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158689|emb|CBW18201.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913120|dbj|BAJ37094.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224779|gb|EFX49842.1| Multidrug transporter MdtC [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130453|gb|ADX17883.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326623964|gb|EGE30309.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332989062|gb|AEF08045.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 1026

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|296117793|ref|ZP_06836376.1| protein-export membrane protein SecD [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969024|gb|EFG82266.1| protein-export membrane protein SecD [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 641

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 100/533 (18%), Positives = 186/533 (34%), Gaps = 51/533 (9%)

Query: 45  SLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD 104
            LG+DL+GG+ + L    ++     L    + L   +   G+    +    N + ++   
Sbjct: 26  KLGIDLQGGTRVTLVPQGEEPTQDQLSQARNILEQRVNGMGVSGAEVVTNGNTLVITVPG 85

Query: 105 S--RFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
                 + +     L  + V  +   DP              +     +++       + 
Sbjct: 86  EDTTQAQAVGATSQLLFRPVAEQPMPDPAALGETIEDMANRWVEYDVLSVESANETLKQV 145

Query: 163 SMEIIRQRIDQ----------------IGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
              +     D+                  + E       + R            +     
Sbjct: 146 DDAVSPTTEDEGADADDADSDAPTVTAEPMPEPENSLEAAERRDEMTEMLLKDRQSEDPT 205

Query: 207 GTTAKM----SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV-----------EDKVEISG 251
              A +       +  P                ++   YL+                ++G
Sbjct: 206 VQAAALSLMQCDAETDPLAGADDPALPFVTCDYANQAPYLLHPAPLLNGVEDPAGPRLTG 265

Query: 252 IHLNGATANF-------DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
             ++  +                          G+  + ++T + + + +A+ LD  V++
Sbjct: 266 NEIDTDSPINGGLNPQSGQMEISFSFQTGDGPSGSDTWAKLTEEYLQQQIAITLDSEVIS 325

Query: 305 APVINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN------VGADLG 357
           APVI    P      I+G FT E A  LA  LR G+LP+     +  +      V   LG
Sbjct: 326 APVIEGVTPYGSATSITGQFTQEEAQSLANNLRYGALPLSFTGEDGESGGTTEIVPPSLG 385

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLT 413
             ++  G  A V GL+L+  + I  +     V+  ++    ILT   + LL    G +L 
Sbjct: 386 KTALEAGLIAGVVGLILVAAYSIYYFRALAGVSLITLVGAAILTYGSIVLLGRWIGYSLD 445

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L  IAG+V+GIG   DS ++  ERI++E    ++   +    + RA STI   N   LI 
Sbjct: 446 LSGIAGLVIGIGATADSFVVYFERIKDELLDGRTFRSAATKAWERARSTIITGNAVTLIG 505

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +V++    G V+GFA T+GL+ +  +  +  I+  +M    R        +N
Sbjct: 506 AIVVYMLAVGEVKGFAFTLGLTTVFDIIVSFLIMAPLMQLAARRPAFAKPSMN 558



 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 8/222 (3%)

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
               G    +     Q         +               +   TEIV P + +  +  
Sbjct: 332 VTPYGSATSITGQFTQEEAQSLANNLRYGALPLSFTGEDGESGGTTEIVPPSLGKTALEA 391

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVA 724
           G++  ++  I +  Y    F+    +  + TL+     T G   L G       +L+ +A
Sbjct: 392 GLIAGVVGLILVAAYSIYYFRALAGVS-LITLVGAAILTYGSIVLLGRWIGYSLDLSGIA 450

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++  IG + +  VV ++R++  +       +FR    K+        +  +    I  +
Sbjct: 451 GLVIGIGATADSFVVYFERIKDELLD---GRTFRSAATKAWERARSTIITGNAVTLIGAI 507

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + +     +  FA  +    V     S  I AP++      
Sbjct: 508 VVYMLAVGEVKGFAFTLGLTTVFDIIVSFLIMAPLMQLAARR 549


>gi|238912558|ref|ZP_04656395.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 1026

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPAQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|204929229|ref|ZP_03220372.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204321773|gb|EDZ06972.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 1026

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNANPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVRFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTIALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + IT++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTITQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVRFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|167551078|ref|ZP_02344833.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205324001|gb|EDZ11840.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 1026

 Score =  149 bits (374), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  K+       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDKVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|296158697|ref|ZP_06841526.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
 gi|295890902|gb|EFG70691.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
          Length = 1040

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/621 (12%), Positives = 174/621 (28%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I  +GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLVGLVALRFLPLSALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PDVMTSSVTAPLERQFGQMPSLNQMSSQSSAGSSIITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +++   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPIIT-LAITSKTLPLTQVQDLADTRLAQKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGQRPAVRIQANPRALAAYGLNLDDLRTTISNLNVNTPKGNF------DGPTRNYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I +       G  
Sbjct: 229 INANDQLTDAD--------------AYKSAVVAYKNGRAVMLTDVATIVQGAENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    +++   L   L+          +          S    
Sbjct: 275 VDGTPAIILNVQRQPGANVIQVVDSIKKLLPQLQQALPAALDVEIVTDRTTTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELAMSVVLVVMVMYLFLANIYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGESPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   I 
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPHESHRFEAKAHRAIDWVIA 514

Query: 539 ------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +   +  +  ++     + +   G IQ    A + V  +
Sbjct: 515 RYAVALTWVLNRQRSTLVVALLTLVLTGLLYVYIPKGFFPVQDTGVIQAITQAPQSVSYA 574

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    + L    +   + + 
Sbjct: 575 SMAERQQELAAQILKNPDVES 595



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    L G   +  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANIYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGESPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAVVSLTLVP 483


>gi|260655923|ref|ZP_05861392.1| protein-export membrane protein SecD [Jonquetella anthropi E3_33
           E1]
 gi|260629539|gb|EEX47733.1| protein-export membrane protein SecD [Jonquetella anthropi E3_33
           E1]
          Length = 468

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 150/527 (28%), Positives = 235/527 (44%), Gaps = 68/527 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + + W +I   ++  +      P                + RI LGLDL GG ++VL+  
Sbjct: 3   KKDRWRLIFVLVVLAVAAYFVFP---------------LRGRIKLGLDLSGGVNIVLKAV 47

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF-KENIADKVTLFLQ 120
                                                           + +   +   + 
Sbjct: 48  PQPGTE------------------------------------LGTDSIDRLLVVLRNRID 71

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI-EQSMEIIRQRIDQIGISES 179
                      + L+       + + L   +  +   + I + ++   RQ ID       
Sbjct: 72  QY------GVTEPLMQRQGADRVVVELPGVDNPEAALNLIGKTALLEFRQVIDSTRPLPP 125

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +R                                      +K     G     D DG 
Sbjct: 126 QAKRENYDSDAEF-------QEAVARWNAYRDQQEALKASMEAKAKSEGGNSIATDEDGA 178

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
            Y +     ++G  L            +PVV + F++ G   F + T DN+GK +A+VLD
Sbjct: 179 IYQL-GATYLTGKDLKN-AGVDYDSLGRPVVSLEFNDKGTDLFDKATADNVGKQIAMVLD 236

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           GRV++AP +N+ I  G+AQISG FT + A  LA MLRAG+LP+ + ++E R+VG  LGSD
Sbjct: 237 GRVISAPRVNERISGGRAQISGRFTPDDARGLAIMLRAGALPVGVEVLENRSVGPSLGSD 296

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           SI  G  A + G+  + ++MIV Y   G+ AD S+   ++L  A+L    ATLTLP +AG
Sbjct: 297 SIRDGQFAGLVGIAAVFIYMIVFYRVLGVTADISLCTTMLLLFAMLIGFKATLTLPGVAG 356

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IVL IG+AVDSNIL+ ER++EE    +S+   +  GFS+A STI D+NIT +IA  VLF 
Sbjct: 357 IVLTIGMAVDSNILIFERMKEETALGRSLHAVITAGFSKALSTILDANITTVIAAAVLFH 416

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +G G +RGFA+T+ + I+ S+F+A+ + R ++  ++ Y K+  I   
Sbjct: 417 YGSGPLRGFALTLTIGIVASLFSALGVNRVLLQLMVDYTKLPIIGRR 463



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/173 (19%), Positives = 76/173 (43%), Gaps = 4/173 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + IR G    ++   A+ IY+ + ++    + A  +L   +         F 
Sbjct: 288 SVGPSLGSDSIRDGQFAGLVGIAAVFIYMIVFYRVL-GVTADISLCTTMLLLFAMLIGFK 346

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  VA ++  IG +V+  +++++RM++   L     S   +I    ++ L   +  
Sbjct: 347 ATLTLPGVAGIVLTIGMAVDSNILIFERMKEETAL---GRSLHAVITAGFSKALSTILDA 403

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++   I+   +  +G   +  FA+ +  GIV +  S++ +   +L  + D+  
Sbjct: 404 NITTVIAAAVLFHYGSGPLRGFALTLTIGIVASLFSALGVNRVLLQLMVDYTK 456


>gi|254523966|ref|ZP_05136021.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
 gi|219721557|gb|EED40082.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
          Length = 1041

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/551 (11%), Positives = 146/551 (26%), Gaps = 38/551 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   +   GL+      L       +P+                   +     
Sbjct: 22  RPVATTLMMVAMLLAGLIACFNLPLSALPEVDYPTIQ--------------VTTLYPGGS 67

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +      + S     + +TL F      +    +V   +   
Sbjct: 68  PEVMALTVTAPLERQFGQMPGLARMISSSSSGASVVTLQFNLDLDLDVAEQEVQAAINAA 127

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + +LS   I        E    + RQ  ++IG       
Sbjct: 128 STLLPTDLPAPPVYAKVNPADAPILS-LAITSPARTLGEVEAIVERQFANRIGQVSGVGL 186

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + + + L     +   +       N +     F       +      
Sbjct: 187 VSVSGGQRPAVRIQANMAALASRGLSLESIRTAIGNANVNAAKGSFDGPSKSWTIDANDQ 246

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                            +                N+            
Sbjct: 247 LASA--------------------DQYAVLVVAYQNGAAVRLRDVANVVSSTENTRLRSW 286

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +   T++        L A         +          S S  
Sbjct: 287 MNREPAIILDVQRQPGANVIATVDAIRQALPGLEAQLPADVHVTLLSDRTEGIRASVSDV 346

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   LV + +FM +   +  L+A  ++ L+++   A +  +G ++   ++  + +
Sbjct: 347 CFELVVAVLLVTLAIFMFLGSWRATLIASIAVPLSLLGAFAPMWAMGFSINNLTLMALTI 406

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I          F +   G      TI    ++ +   + L F G 
Sbjct: 407 ASGFVVDDAIVVLENISRHVENGMRPFQAALKGAGEIGFTIVSLTVSLIAVLIPLLFMGD 466

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+++  +IL+S   A+++V  +    +R  + +                 A
Sbjct: 467 IVGRLFREFAVSLAATILLSAVVALTLVPMLAARWLRPAQQERPSRISQWTVQRFEQLTA 526

Query: 540 IQFMRARFWGV 550
           +      +  V
Sbjct: 527 LYARGLDWVIV 537



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 84/274 (30%), Gaps = 14/274 (5%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +T   N  +       + V+A +      +R     +   + +       +   + L  Q
Sbjct: 239 WTIDANDQLASADQYAVLVVAYQNGAAVRLRDVANVVSSTENTRLRSWMNREPAIILDVQ 298

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK----GIVGVIISAIAM 680
                     ++ +++ +  +           +    +  +           V+   +  
Sbjct: 299 RQPGANVIATVDAIRQALPGLEAQLPADVHVTLLSDRTEGIRASVSDVCFELVVAVLLVT 358

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           L        W   L A   + L +          G   N   + A+    G+ V+D +VV
Sbjct: 359 LAIFMFLGSWRATLIASIAVPLSLLGAFAPMWAMGFSINNLTLMALTIASGFVVDDAIVV 418

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF 797
            + +    +     +       K   E     V  +++    ++P+   G   G +   F
Sbjct: 419 LENI---SRHVENGMRPFQAALKGAGEIGFTIVSLTVSLIAVLIPLLFMGDIVGRLFREF 475

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           A+ +A  I++    S  +A  ++  +     + A
Sbjct: 476 AVSLAATILL----SAVVALTLVPMLAARWLRPA 505



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 9/92 (9%)

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
            MR+              I ++        + T+ AA  + LP+      G  +     I 
Sbjct: 947  MREE------GKDAVAAIRQAALLRFRPIMMTTFAALFAALPLIFGSGMGHELRQPLGIA 1000

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +A G++++ + ++F    I L     R ++AR
Sbjct: 1001 IAGGLILSQALTLFTTPVIFLMFERLRERHAR 1032


>gi|330874665|gb|EGH08814.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 357

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 93/250 (37%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + +   V +         +    +    ++ L       G +         +  +
Sbjct: 109 TTTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLR 168

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +           +GP +  + I KGI   +   + + ++I   +++ F L A   L 
Sbjct: 169 AGGLAAPMYFAEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRF-FGLIATVALA 227

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L++   L   +L G    L  +A ++  +G +V+  V+++ R+R+ +      ++ +  I
Sbjct: 228 LNMVMLLALMSLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIA---NGMTVQRAI 284

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++  +      +  ++   +    +   G   +  FA+ M+ GI  +  ++I +   ++ 
Sbjct: 285 NEGFDRAYTAILDANLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVN 344

Query: 822 FIYDWRAKNA 831
            IY  R    
Sbjct: 345 LIYGGRDFKK 354



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 122/359 (33%), Positives = 189/359 (52%), Gaps = 29/359 (8%)

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 1   PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 59

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL------------------- 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +                   
Sbjct: 60  VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSMAVIFIEQRPTTTYTKQMVN 118

Query: 295 --------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                       + + + +    Q+    + +I+G      +  LA +LRAG L   +  
Sbjct: 119 GVEKDVPVQTFKEEKKIISLATIQSPLGSQFRITGLNGQGESSELALLLRAGGLAAPMYF 178

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            EER +G  LG+D+I KG  A + G++ + LF++ +Y  +GL+A  ++ LN+++ LAL+S
Sbjct: 179 AEERTIGPSLGADNITKGIDASLWGMLFVSLFIMAIYRFFGLIATVALALNMVMLLALMS 238

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           LLGATLTLP IAGIVL +G+AVD+N+L+  RIREE     +V  +++ GF RAY+ I D+
Sbjct: 239 LLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIANGMTVQRAINEGFDRAYTAILDA 298

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           N+T L+   +LF  G G V+GFA+TM L I  SMFTAI + RAM+  I   +  K + I
Sbjct: 299 NLTTLLVGGILFAMGTGPVKGFAVTMSLGIFTSMFTAIMVTRAMVNLIYGGRDFKKLWI 357


>gi|170721973|ref|YP_001749661.1| acriflavin resistance protein [Pseudomonas putida W619]
 gi|169759976|gb|ACA73292.1| acriflavin resistance protein [Pseudomonas putida W619]
          Length = 1035

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/588 (11%), Positives = 165/588 (28%), Gaps = 43/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   I  +G +           +   P       +             L   
Sbjct: 9   RRPVATMLLSLAIMLLGGVS-----FGLLPVSPLPQMDFPVIV---------VQANLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S  Q   ++ + F   R  +  A +V   +  
Sbjct: 55  SPEVMASTVATPLERKLGSIAGVTTLTSSSNQGSTRVIIGFEQGRDIDGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 TRNLLPSGMRSMPTYKKLNPSQAPIMV-LSLTSDVLQKGQLYDLADTILSQSLAQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    +P  L Q   +  ++       N  +                  
Sbjct: 174 EVQIGGSSLPAVRISVEPQLLNQYSLSLDEVRTAVANANQRRPMGFVEDSERNWQVRAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       I   +             I   +    +  
Sbjct: 234 QLEKAKD--------------------YEPIVIRQQNGTILRLSDVATITDSVENRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +   +   T++        L++         V          +   
Sbjct: 274 FFNDQSAVLLVVNRQIGANIIETVDQIHAQLPALQSLLPASVQLNVAMDRSPVIKATLKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+++ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEHTLLIAVVLVILVVYLFLGSLRASLIPSLAVPVSLVGTFAVMYLCGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I       Q    +  +G      T+   N++ +   V + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIEDGQPPMRAAFLGAKEVGFTLLSMNVSLVAVFVSILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPLSRFFL 533
           G      + F+IT+  +I++S+  ++++   +    ++       +++    N   R   
Sbjct: 454 GIVRNLFQEFSITLAAAIIVSLVVSLTLTPMLCARWLKPHRAEQTRLQRWSDNVHKRMVE 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             D      +R +   +   +     +I L              G  +
Sbjct: 514 GYDRSLSWALRHKRLTLISLLATIGLNIVLYVVVPKTLIPQQDTGQLM 561



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 7/152 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                  +L     + + +  T     L G   N  ++ A++   G  V+D +VV + + 
Sbjct: 352 FLGSLRASLIPSLAVPVSLVGTFAVMYLCGFSLNNLSLMALILATGLVVDDAIVVLENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +                 E     +  +++     + +   GG V      F+I +A
Sbjct: 411 --SRHIEDGQPPMRAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLA 468

Query: 803 FGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
             I+V+   S+ +   +   ++   RA+  R+
Sbjct: 469 AAIIVSLVVSLTLTPMLCARWLKPHRAEQTRL 500



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 94/264 (35%), Gaps = 6/264 (2%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            N    +       V         V  S +   +    + +     +     + +   +  
Sbjct: 757  NPKYAWDPSSLEQVQVITSDGARVPLSTIAHYENSLANDRVSHEGQFAAEDIAFDVAEGY 816

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +  + +  V++ + ++     +            +  +     ++ + + + + + I ++
Sbjct: 817  SPDQAMAAVERAVAKLGLPEEVIAKLGGTADAFAKTQQGQPFMILGALVLVYLVLGILYE 876

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  ++TL       L    + G EF+L ++  +  LIG    + +++ D      
Sbjct: 877  SYIHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMID--LALQ 934

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  ++  + I ++    L   + T++AA +  LP+ +    G  +     + +  G+
Sbjct: 935  LERHQGLTPEESIRRACLLRLRPILMTTLAAMLGALPLLLSRAEGAEMRQPLGLTIIGGL 994

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            V +   +++    + L++   R +
Sbjct: 995  VFSQVLTLYTTPVVYLYLDRLRHR 1018


>gi|169629964|ref|YP_001703613.1| preprotein translocase subunit SecD [Mycobacterium abscessus ATCC
           19977]
 gi|169241931|emb|CAM62959.1| Probable protein-export membrane protein SecD [Mycobacterium
           abscessus]
          Length = 586

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 123/556 (22%), Positives = 214/556 (38%), Gaps = 61/556 (10%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +   ++  IG  + +     +                LG+DL+GG+ + L     D  
Sbjct: 12  RYLAAFLVLLIGAYLLVFLTGDKQPKP-----------KLGIDLQGGTRVTLTARTPDGS 60

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQG 121
                 L      + + +   G+    +    + + ++    D     N+     L+++ 
Sbjct: 61  KPTKEALTQAQQIINARVNGLGVSGSEVIIDGDNLVITVPGNDGSEARNLGQTAKLYIRP 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA---------------------- 159
           V   +   PK+N        +                A                      
Sbjct: 121 VVQAVPAQPKENPEPGAGAPQQGQPAPAKEATPPAPGAGKSTPAAPPSPKPQPRPYPAQT 180

Query: 160 -------------IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                           +        D      S  +R        Q+   +DP R++ L 
Sbjct: 181 TTPPPPPPATQPATPNATTAPAPPADLPPKPGSGEERKQLIDFEKQIRQSEDP-RIQMLA 239

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD---GNQYLVEDKVEISGIHLNGATANFDP 263
                   +      +              D   G    + DK  ISG  +  A++  D 
Sbjct: 240 LQVQASRCYDPDDPLAGNDDPNLPLVTCGDDSQGGKAAYLLDKSIISGEEIKDASSGLDQ 299

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDN--IGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           +    VV + F   GA+ + + T  +   G   A  LD +V++AP I + IP GK +ISG
Sbjct: 300 QRGIYVVSMEFKPTGAKVWADYTSAHWQQGTQTAFTLDSKVISAPAIREPIPGGKTEISG 359

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
            FT ++A  LAA L+ GSLP+     + + V A LG  S+  G  A   GL +++L+ ++
Sbjct: 360 QFTSDSAKQLAAALKYGSLPLSFESSDAQTVSATLGLTSLKAGLIAGAIGLAIVLLYSLI 419

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNER 437
            Y   GL+   S+  +  +  A+L LL      TL L  IAG+++GIG   DS ++  ER
Sbjct: 420 YYRVLGLLTALSLVASGAMVFAILVLLGRYISYTLDLAGIAGLIIGIGTTADSFVVFFER 479

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           I++E R+ +S   ++  G++RA  TI   N   L+A VVL+    G V+GFA T+GL+ +
Sbjct: 480 IKDEIREGRSYRSAVPRGWARARKTILSGNAVTLLAAVVLYILAIGQVKGFAFTLGLTTI 539

Query: 498 ISMFTAISIVRAMMIF 513
           + +     +   ++  
Sbjct: 540 LDVVVVFLVTWPLVYL 555



 Score = 88.6 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 24/205 (11%), Positives = 69/205 (33%), Gaps = 8/205 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G   + +        K   +       + + V   +    ++ G++   I    +L
Sbjct: 355 TEISGQFTSDSAKQLAAALKYGSLPLSFESSDAQTVSATLGLTSLKAGLIAGAIGLAIVL 414

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDK 737
           +Y  I ++    L    +L+           L G       +L  +A ++  IG + +  
Sbjct: 415 LYSLIYYRV-LGLLTALSLVASGAMVFAILVLLGRYISYTLDLAGIAGLIIGIGTTADSF 473

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           VV ++R++  ++      S+R  + +         +  +    ++ + + +     +  F
Sbjct: 474 VVFFERIKDEIRE---GRSYRSAVPRGWARARKTILSGNAVTLLAAVVLYILAIGQVKGF 530

Query: 798 AIPMAFGIVVAASSSIFIAAPILLF 822
           A  +    ++       +  P++  
Sbjct: 531 AFTLGLTTILDVVVVFLVTWPLVYL 555


>gi|154248475|ref|YP_001419433.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
 gi|154162560|gb|ABS69776.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
          Length = 1042

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 69/651 (10%), Positives = 167/651 (25%), Gaps = 40/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +   GL         Q  +   P                     L   
Sbjct: 8   RRPVMTTLMMLSLIVAGLFA-----YRQLPVAALPRVDFPTIT---------ITATLPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        S  Q  + IT+ F  +R  +  A  V   L  
Sbjct: 54  SPETMATAVATPIERQLATIAGISSLTSSSTQGSSSITVQFDLNRNIDAAALDVQSALSV 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              + VL               +         QI       
Sbjct: 114 AQRQLPQEMTTPPSFRKVNPADAPVLLLVVSSD-TLPLSAVNEYADTLIGQQISQLPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP+       +   +        ++    +        +     
Sbjct: 173 QVQIYGTQKYAVRIRVDPAAAGARNISAEDIQGAVSAAASNTPLGIISGPKQSQTI---- 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         I                 I   +       
Sbjct: 229 ----------------DMGSTKADATQFRRIVVAWRNGAPVRLEEIATISDGVENERVAS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++         RA                +   + + 
Sbjct: 273 WFNDTRAIILAVVRQPDANTVSVVDAVRARLPSFRAQLPASVNIDTFMDRSVSIRDAVAD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+F+ +   +  ++   ++ ++++ T A++ LLG ++   ++  + 
Sbjct: 333 VQKTLFEAIVLVVLVIFLFLRNVRATIIPSLALPISIVSTFAVMWLLGFSINNMTLLALT 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I+V E I       +  F +   G      TI    ++ +   + + F G
Sbjct: 393 LCVGFVVDDAIVVLENIYRHVENGEKPFRAAIRGSREIGFTIISMTLSLVAVFIPVLFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ ++IL+S F ++++   +   +++                 + D  
Sbjct: 453 GVVGRVFREFAVTISVAILVSGFVSLTLTPMLCARVMKAPDHAKKPSAFFRITERMFDAW 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL--ANRPVDLSVVRS 596
              +  +  + +       + ++  +      Y I  KG             V+ +   S
Sbjct: 513 LGAYRVSLDFVLRHRPFMLVVTLATVVLSVYLYIIIPKGFFPQEDNGFITGTVEAATDSS 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +       +   G+ +    +        ++T     +   +     
Sbjct: 573 FDAMVVRQKQVAEAVRGDPDVDYVVFTAGATGASRTTNTGRLFIALKPRDT 623



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 69/194 (35%), Gaps = 9/194 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    L   + ++   V + T  +  +       ++ +     +++  + + +++    
Sbjct: 297 DAVRARLPSFRAQLPASVNIDTFMDRSVSIRDAVADVQKTLFEAIVLVVLVIFLFL---R 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +     L + I  T     L G   N   + A+   +G+ V+D +VV + +    
Sbjct: 354 NVRATIIPSLALPISIVSTFAVMWLLGFSINNMTLLALTLCVGFVVDDAIVVLENI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
           +             +   E     +  +++     +P+   GG    V   FA+ ++  I
Sbjct: 411 RHVENGEKPFRAAIRGSREIGFTIISMTLSLVAVFIPVLFMGGVVGRVFREFAVTISVAI 470

Query: 806 VVAASSSIFIAAPI 819
           +V+   S+ +   +
Sbjct: 471 LVSGFVSLTLTPML 484



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 93/234 (39%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              + ++            ++   V + +      A  + +E +     +    ++I    
Sbjct: 784  ETVANITRTVGPLSIQHQQQQPAVTISFNLAPGTALGQAVEQIDAAALDAALPASITTGF 843

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                ++ ++ +    + ++ + + + I + I ++ +   +  ++ L       L    + 
Sbjct: 844  AGNAQVFQDSLSNQPLLILAAVVVIYIVLGILYESFIHPITILSGLPSAGIGALITLMVA 903

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+E ++ A+  ++ L+G    + +++ D   +  +        +D I ++        + 
Sbjct: 904  GMELSVIAIIGIIMLVGIVKKNAIMMIDVALERRRA---GAMAQDAIREAALLRFRPIMM 960

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T++AA   VLP+A+    G  +     + +  G++++   +++I   I L++  
Sbjct: 961  TTLAAIFGVLPIALGAGAGSELRQPLGVAVVGGLLLSQLLTLYITPVIYLYLDR 1014


>gi|319898426|ref|YP_004158519.1| AcrB/AcrD/AcrF multidrug efflux protein [Bartonella clarridgeiae
           73]
 gi|319402390|emb|CBI75929.1| AcrB/AcrD/AcrF multidrug efflux protein [Bartonella clarridgeiae
           73]
          Length = 1047

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 66/519 (12%), Positives = 148/519 (28%), Gaps = 43/519 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++ +MI   G   A  N      +   P                    +    
Sbjct: 25  RRPVFTFVVNAMIMIAG-FAAWMNV----DVRELPDVDTPVTT---------IMTIFSGA 70

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  + +        +    ++++ ++F         A  +   +  
Sbjct: 71  SAETIDREVTKVIEDAVARVSGVKTISSTSSFGRSRVQINFNVGVDLNVAASDIRDAISR 130

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    L++       S++        +     + +  +  Q +D +   +   
Sbjct: 131 IAYSLPKDADSPLIIKADSNAASMMYLVVTSPTMSID--DLTTVVNDQIVDVLSAVDGVG 188

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                +        + D  +L     T A +S                            
Sbjct: 189 DVQVDNARTKIFQIDVDQVKLASYGLTVADISRVLADMTTDAPVGSLRNSIQTLIVRATA 248

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +        + L                                  ++     V     
Sbjct: 249 RLTTPEAFEQVVLKPH------------------------VRLGDVAHVTLSPDVETVIL 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            KAQ +     E    +   L+    P     +   +      +   
Sbjct: 285 RINGKTGIGMGIVRKAQSNTLDISEGIRAVLENLKIVLPPSVDISILSDDAIFIKSALHE 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  I    V++V+F+ +   +  L+   SI + +I T+A + L   +L + +  GIV
Sbjct: 345 VKITLVIAILSVILVIFLFLRDIRVTLIPVLSIPVALIGTIAAIYLADFSLNILTFLGIV 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G    +  +  + +T +   V + F  
Sbjct: 405 LATGLVVDDAIVVLENIVRWRNMGLGSRSAAVVGTREVFFAVLATTLTLVAVFVPISFLP 464

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           G      + F   + +SIL+S   A+++   +    +R 
Sbjct: 465 GQVGGLFKEFGFVLAISILLSSVVALTLCPMLASRFLRK 503



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 88/249 (35%), Gaps = 7/249 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+    V L  V     S  +  +  +        +  ++    +++  +  +  V + 
Sbjct: 258 QVVLKPHVRLGDVAHVTLSPDVETVILRINGKTGIGMGIVRKAQSNTLDISEGIRAVLEN 317

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTL 700
           +  ++P S   +         +  + +  + ++I+ +++++ I          L  + ++
Sbjct: 318 LKIVLPPSVDISILSDDAIFIKSALHEVKITLVIAILSVILVIFLFLRDIRVTLIPVLSI 377

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L     N+     ++   G  V+D +VV + +   ++     +  R  
Sbjct: 378 PVALIGTIAAIYLADFSLNILTFLGIVLATGLVVDDAIVVLENI---VRWRNMGLGSRSA 434

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
                 E     + T++      +P++   G V      F   +A  I++++  ++ +  
Sbjct: 435 AVVGTREVFFAVLATTLTLVAVFVPISFLPGQVGGLFKEFGFVLAISILLSSVVALTLCP 494

Query: 818 PILLFIYDW 826
            +       
Sbjct: 495 MLASRFLRK 503



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 90/255 (35%), Gaps = 12/255 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                 ++ V LS +    E      +  +           L        A   + ++   
Sbjct: 784  FKTTDDKYVPLSAIADLHEKAIAPQLKREKRMSAVVLSAGLASGVSLGNAYQIIKDIASP 843

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + E   +  +     +G   S  +I  G     I+ + +L+ +  +F+ +      + T
Sbjct: 844  LLLEGNYIVPLGEAATLGETSSSFMIVFG-----IAFVIILLVLAAQFESFVSGFIIMAT 898

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + L I   +      G+  N+ +   ++ L+G    + +++ +      +L     S R+
Sbjct: 899  VPLGIGCAVIAMLFSGVSLNIYSQIGLILLVGVMAKNGILIVEFA---DQLRNQGKSVRE 955

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             ++ + N  L     T + A +  +P+ +    G     +    +  G+ +A   ++++ 
Sbjct: 956  AVEDAANIRLRPVCMTMICAILGGIPLVLAKGAGAEARIALGWVIFGGLGLATVFTLYVT 1015

Query: 817  APILLFIYDWRAKNA 831
              + L +  +    A
Sbjct: 1016 PVVYLLLGRFVQPKA 1030


>gi|269798063|ref|YP_003311963.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Veillonella parvula DSM 2008]
 gi|269094692|gb|ACZ24683.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Veillonella parvula DSM 2008]
          Length = 1060

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 96/763 (12%), Positives = 212/763 (27%), Gaps = 75/763 (9%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +GL+  +        + R+P   P              +          VN  +    
Sbjct: 20  TLVGLISMM-----NLPVARYPQISPPTVQ---------VNTAYTGATAQVVNDTVASVI 65

Query: 75  DELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           +     ++       +     +  +T+ F      +  A      +Q   ++L  + +  
Sbjct: 66  ETQIVGVQDMDYMTSNSSSNGSYSLTVQFNQGTDADMDAVNTQNRVQAALAQLPSEVQAV 125

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            + TT       ++   +       A           +D I   +              +
Sbjct: 126 GVTTTKSSGDMALIFSLSSPNGTYDATFLKNYGTNYMMDTIKSIKGVGSVQEFGS-DYSM 184

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP+++++L  T ++++      N        G          QY ++    +    
Sbjct: 185 RIWLDPAKMQKLGVTISEVTAAIKGQNLQAAAGTVGKNPTNGEQAFQYPIKIDGRL---- 240

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                      T +   +I+   +  +         I                 +     
Sbjct: 241 ----------VTPEQFGNIAIKSINGKVLHLKDVSRIQIGAEGYDFIAKSAHKEVAGFAI 290

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
           S +   +   TI     +         P     V   N      S +  + T      LV
Sbjct: 291 SLQNDANALETIANVKKVLDEQSKSFPPDMQYNVVVDNTKFVSASINEVEHTFVEALLLV 350

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           L+V+++ +   +  ++   ++ ++++ T     LL  ++   ++  +VL IGL VD  I+
Sbjct: 351 LVVVYVFLQSWRSTIIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIV 410

Query: 434 VNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           V E +  E          +           +           V + F GG      + FA
Sbjct: 411 VVEAVEYELKYNGLPPKEAAIKAMENVQGPVIGIAFVLTAVFVPVAFMGGMTGILYKQFA 470

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +T+ +S++IS   A+ +  A+   +        I  N         +       R   W 
Sbjct: 471 LTIAVSVVISAIIALVLTPALCSTM----LKPHISKNREDWLHRQLNKFNAALERFSNWY 526

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                  S     ++ T  +  G        L        D       +           
Sbjct: 527 GIQLARLSHRLSLIVITLLVFAGGTALVFHFLPTSFVPAEDSGYYMIAINEPPGATSERT 586

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
               EK      +    +     ++ + V       +     ++                
Sbjct: 587 MATLEKIASFLEEKNDPEKPKDEQLFQEVFTVAGFDLLGGGQKS---------------- 630

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA-----LFGIEFNLTAVA 724
                 SA  +   +     W +   A T++   + +T GF A        I  N  ++ 
Sbjct: 631 ------SAGVIFATMS---DWKYRTTAATSINAMVGQTFGFAAQGVPEATVIAMNPPSIP 681

Query: 725 AVLTLIGYSV-------NDKVVVYDRMRKNMKLYTTSISFRDL 760
            + T  G+S+       +   V+ DR  + +     S + + +
Sbjct: 682 GLGTTGGFSMYIINKAGDSPQVMADRTNEFIAEARKSPAIQSI 724



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 65/167 (38%), Gaps = 12/167 (7%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF------NL 720
            + ++ + +  + + + +   ++ W      + ++   +        L           ++
Sbjct: 881  QSMLILGLGLVFVFLILAALYESWKVPFAVLFSVPSGMIGASLVPFLLNFTGRYSLANDI 940

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 +LTL+G +  + +++ +  +  +++    ++  D   ++    L   + TS A  
Sbjct: 941  YMQIGLLTLVGLAAKNAILIIEYAK--IRVDERGMNVVDAAIEAAKIRLRPILMTSFAFI 998

Query: 781  ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            + VLP+AV    G     S  I +  G+  A    IFI   + + I 
Sbjct: 999  LGVLPLAVSSGAGSGARTSMGITVVAGMTTATLFGIFIIPMLFIIIE 1045


>gi|207857564|ref|YP_002244215.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|226700779|sp|B5R0C1|MDTC_SALEP RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|206709367|emb|CAR33707.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 1026

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPAQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|126642842|ref|YP_001085826.1| nodulation protein precursor [Acinetobacter baumannii ATCC 17978]
 gi|126388726|gb|ABO13224.1| nodulation protein precursor [Acinetobacter baumannii ATCC 17978]
          Length = 1011

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 65/616 (10%), Positives = 160/616 (25%), Gaps = 48/616 (7%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +GL         +  ++ FP+      +                   + V   +    
Sbjct: 1   MVLGLAS-----WKRMTVEEFPNIDFPFVV---------VTTQYAGASPEAVESDITKKL 46

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
           ++  + +           +  + +   F         A  V   +  V ++   +    +
Sbjct: 47  EDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAPVIAQFRDEIDTPI 106

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
           +         I+      +       + S  + ++ + Q+                 Q+ 
Sbjct: 107 VQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVGNVNLLGDAKRQIR 164

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
            +  P +L+       ++       N          +        Q  V           
Sbjct: 165 IKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQSKV----------- 213

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPS 314
                           D+          F      +    A +                 
Sbjct: 214 ---------IHPLGFGDLVIANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDIL 264

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
             +  +    ++        L+A         V   +      S      T    A L +
Sbjct: 265 KSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGAVLAV 324

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + L IGL +D  I+V
Sbjct: 325 LIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVV 384

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAIT 491
            E I       +    +   G       +  + +T +   + + F G   G     F +T
Sbjct: 385 RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVT 444

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM-------- 543
           +  ++LISMF + ++   +        K K   +     +                    
Sbjct: 445 VSTAVLISMFISFTLDPMLSAHWKDPVKKKESRLQRFFNYISNLLDGLTHIYEKLLKLAL 504

Query: 544 RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           R RF  V I  +   +                 KG I++         L   ++ L  + 
Sbjct: 505 RFRFITVIIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDSSLEYTQAKLHQVD 564

Query: 603 IGDISFQNFDGEKNFL 618
                F +       +
Sbjct: 565 QIIRQFPDVVSTYGVV 580



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 8/218 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +             +  + ++K   ++      +        I   +       +  +
Sbjct: 261 VDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGA 320

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG  ++D
Sbjct: 321 VLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDD 380

Query: 737 KVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+  +T               E     + T++      LP+A  GG +  
Sbjct: 381 AIVV----RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGR 436

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F + ++  ++++   S  +   +     D   K 
Sbjct: 437 FFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKK 474



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669 GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 840 ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 899

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 900 MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 956

Query: 788 VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 957 LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 999


>gi|154706570|ref|YP_001424384.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           Dugway 5J108-111]
 gi|154355856|gb|ABS77318.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           Dugway 5J108-111]
          Length = 1040

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/530 (12%), Positives = 152/530 (28%), Gaps = 38/530 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +IL   +   GL+        +  +   P+      +             L   
Sbjct: 9   QRPVATIILMLALVIAGLVA-----YFRLPISELPNVDFPTLV---------VSAKLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + +   +    ++  S +               KI + FA +R  ++ A  V   L  
Sbjct: 55  DPETMATSVATPLEKELSTISGIESMSSVSSSGSTKIIMQFALTRNIDSAAQDVQSALLQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L         +       S VL    +        +            + +     
Sbjct: 115 VARRLPSQMPDPPTIRKMNPADSPVLY-LALSADHLSMTKLDDFAENYLAPNLSMLNGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ ++    +   +       N+++                  
Sbjct: 174 TVNVFGAQQYAVRIHLNPNAVKSRGLSLDDIKQSIQNLNSNQA----------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                ++  G +             +    I   + G+          +   +A      
Sbjct: 217 --TGTLQTDGFYHLIKADGGLDNAKQFGNAIISYQNGSP-VRLKDIATVKNSIANDKAVT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    +         L           V          +   
Sbjct: 274 EYNNKRAIVLAIQRQPGSNTVSVVNEVLKSLPGLNQKLPGDAKLQVVYNKAVFIQSAIDD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV +V+++ +    + ++A  S+ ++VI T A++ LL  +L   S+  +V
Sbjct: 334 VELTLLFAVFLVTVVVYLFLRNFSFTIIAALSLPISVIATFAMMYLLSYSLDNLSLMALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  +D  I+V E I     +      +   G      T+    I+ +   + +FF G
Sbjct: 394 LAVGFIIDDAIVVLENIVRYIEQGMDKLTASLRGSKEVNFTVVAMTISLVAVFIPIFFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              G     FA  +G+SIL S F A++++  +   +I+ K  +       
Sbjct: 454 GIVGRLFHEFAAVVGISILFSAFVALTLIPMLCSRLIKEKSSQEEKKPTW 503



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 89/259 (34%), Gaps = 11/259 (4%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G   +      PV L  + +   S+       +  +     L   +    ++V+    + 
Sbjct: 242 GNAIISYQNGSPVRLKDIATVKNSIANDKAVTEYNNKRAIVLAIQRQPGSNTVSVVNEVL 301

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
                + + +P               +  I    + ++ +   + + +++  + + F + 
Sbjct: 302 KSLPGLNQKLPGDAKLQVVYNKAVFIQSAIDDVELTLLFAVFLVTVVVYLFLRNFSFTII 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A  +L + +  T     L     +  ++ A++  +G+ ++D +VV + +   ++     +
Sbjct: 362 AALSLPISVIATFAMMYLLSYSLDNLSLMALVLAVGFIIDDAIVVLENI---VRYIEQGM 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  +   E     V  +++     +P+   GG V      FA  +   I+     S
Sbjct: 419 DKLTASLRGSKEVNFTVVAMTISLVAVFIPIFFMGGIVGRLFHEFAAVVGISILF----S 474

Query: 813 IFIAAPILLFIYDWRAKNA 831
            F+A  ++  +     K  
Sbjct: 475 AFVALTLIPMLCSRLIKEK 493



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 103/280 (36%), Gaps = 15/280 (5%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               + +       + I     + +       V LS + +  ++     I+          
Sbjct: 750  DYQVIMDIDPKYQHSIGSLNNLSIKSSTGNMVPLSDLVTMSQTSGPLAINHYEQLPAITL 809

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
               LQ          +V  + K+ +   V  + I   E     ++        + +++  
Sbjct: 810  SFNLQPGYSLGNVTAKVQAVAKQTLPMDVSGNFIGTAEKFQQSLTT-------LPLLLGF 862

Query: 678  IAMLIYI--WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              ++IY+   I ++ +   L  +T L   I   L    +F  E N+ +   ++ L+G + 
Sbjct: 863  TILIIYMVLAILYENFIHPLTILTALPFAIFGALLCLYIFNQELNIFSFIGLIMLVGITK 922

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGG 791
             + +++ D     M+     +  +  I ++ +      + T+++A ++ LP+A+    GG
Sbjct: 923  KNGIIMVDFALDAMRK--QGLDAKQAILQACSIRFRPIMMTTVSAIVAALPIALGVGAGG 980

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                   I +  G+V +   ++++     + +    +K +
Sbjct: 981  ETRQGLGISIVGGLVFSQLITLYVTPVFYIVMDKLFSKKS 1020


>gi|319763734|ref|YP_004127671.1| acriflavin resistance protein [Alicycliphilus denitrificans BC]
 gi|317118295|gb|ADV00784.1| acriflavin resistance protein [Alicycliphilus denitrificans BC]
          Length = 1038

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 67/515 (13%), Positives = 145/515 (28%), Gaps = 33/515 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L           +   P                    +     
Sbjct: 10  RPIATSLLMVAILVAGMLA-----YRLLPISALPEVDYPTIQ---------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL FA     +    +V   +   
Sbjct: 56  PDVMTSNVTAPLERQFGQMPGLAQMSSTSSGGASVITLRFALDYGLDVAEQQVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     L +      + +L+   +       I  +  +  +   ++        
Sbjct: 116 ANLLPGDLPMPPLYSKVNPADAPILT-LAVTSPSLPVIRINDLVENRLAPKLSQVGGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L  +  +   +       N  +                   
Sbjct: 175 VAIAGGRRPAVRIQANPQALASVGLSLEDLRGAIAAANVKQPKG---------------G 219

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +  +  + I  N    +        +   + + +      +   D     LA       
Sbjct: 220 FDGPLRATTIDANDQLQSAQEYRDLIIAYRNGNPVRLSAVADTVDDAENTRLAAWAGTPD 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +          +   +   T++    L   L           V          S    
Sbjct: 280 DGSKAAVILNIKRQPGANVIETVDRVKALLPQLEETLPASLQVHVLTDRTVTIRASVRDM 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV+ V+F+ +  G   L+  F++ L++I T  ++ L G ++   ++  + +
Sbjct: 340 QHELLLAVALVVAVIFVFLRSGTATLIPSFAVPLSLIGTFGVMYLAGFSINNLTLMALTI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I       +    +   G  +   TI    I+ +   + L F G 
Sbjct: 400 STGFVVDDAIVMIENIARYVEAGEPPLAAALKGARQIGFTIISLTISLIAVLIPLLFMGD 459

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G     FAITM +SILIS   ++S    +   +
Sbjct: 460 VVGRLFHEFAITMAVSILISAVISLSFTPMLCARL 494



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 77/237 (32%), Gaps = 9/237 (3%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              VD +            D   +                        +L  +++ +   
Sbjct: 260 ADTVDDAENTRLAAWAGTPDDGSKAAVILNIKRQPGANVIETVDRVKALLPQLEETLPAS 319

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
           + +  + +  +      R++  + ++ V +    + +++         L     + L + 
Sbjct: 320 LQVHVLTDRTVTIRASVRDMQHELLLAVALVVAVIFVFL---RSGTATLIPSFAVPLSLI 376

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G   L G   N   + A+    G+ V+D +V+ + +    +             K  
Sbjct: 377 GTFGVMYLAGFSINNLTLMALTISTGFVVDDAIVMIENI---ARYVEAGEPPLAAALKGA 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     +  +++    ++P+   G   G +   FAI MA  I+++A  S+     +
Sbjct: 434 RQIGFTIISLTISLIAVLIPLLFMGDVVGRLFHEFAITMAVSILISAVISLSFTPML 490



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 86/247 (34%), Gaps = 6/247 (2%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             PV LS +    E      ++                      A   +         +  
Sbjct: 783  TPVPLSSLARVEERSMALAVNHVGQLPASTISFNTAPGVSLGQAVKAIERARDDLRAQGQ 842

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDIT 705
               ++           +  +   ++ ++ + I M I + + ++     +  ++TL     
Sbjct: 843  MPISVDMAFQGAALAFQASLTNTLLLILAAVITMYIVLGVLYESTIHPVTILSTLPSAGV 902

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L    + G+E ++ AV  ++ LIG    + +++ D      +     +S R+ I ++ 
Sbjct: 903  GALLALGMAGLEIDIIAVIGIVLLIGIVKKNAIMMIDFALDAQRE--QGLSAREAIYQAC 960

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + T++AA +  LP+ +    G  +     + M  G++++   ++F    I L 
Sbjct: 961  LLRFRPILMTTLAALLGALPLMLGQGVGSELRHPLGVTMVGGLILSQLLTLFTTPVIYLT 1020

Query: 823  IYDWRAK 829
               W  +
Sbjct: 1021 FEGWAQR 1027


>gi|212690739|ref|ZP_03298867.1| hypothetical protein BACDOR_00226 [Bacteroides dorei DSM 17855]
 gi|212666713|gb|EEB27285.1| hypothetical protein BACDOR_00226 [Bacteroides dorei DSM 17855]
          Length = 1056

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 70/617 (11%), Positives = 169/617 (27%), Gaps = 50/617 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +              +  
Sbjct: 9   KKPIMTSLCFLAVAIFGLFS-----LSKLPVDLYPDIDTNTIM---------VMTSYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNSVSNLKHITSKSSENISVITLEFEYGYDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  +    ++   +   I I+L     ++      +         ++ +       
Sbjct: 115 VSSQLPDEVNTPIIFKFSTDMIPILLLSVQAEESQPALYKILD---DNVVNPLARVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     ++    DP++L     T   +S      N +  G  F V     S   + 
Sbjct: 172 TVSIAGAPKREVNIYCDPNKLEAYDLTIETISSIVGAENKNTPGGTFDVGSNTYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E+                     +I          +      +   +       
Sbjct: 232 EFKDPKEME--------------------NIVVGTRNGASVYLRDVATVVDSVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVNISQKVMDQLPKLQKSLPSDVKLGVIVNTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420
              T       V++V+F+ +   +  ++   +I +++I +   L++    +L + S++ +
Sbjct: 332 LTETIMYAILFVVLVVFVFLGRWRATVIICITIPMSLIASFIYLAITDGGSLNIISLSCL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD  I+V E +     +      +   G +    ++  S +T +     L   
Sbjct: 392 SIAIGNVVDDAIVVLENVTTHIERGSEPKQAAIHGTNEVAISVIASTLTMIAVFFPLTMV 451

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
            G +    R     M + + IS  +A+S    M   +               K I+    
Sbjct: 452 SGMSGVLFRQLGWMMCVIMTISTISALSFTPMMCAQMLRLQKKQSKCFVTFYKPIERALD 511

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +       R    G    F +  IC        +       I + +     
Sbjct: 512 GLDNWYQKRLNWAVRHRRTIIAGCFGFFLLSLICAKGIGTEFFPSQDNSRISVQLQLPIG 571

Query: 589 VDLSVVRSNLESLQIGD 605
             +   ++  + L    
Sbjct: 572 ARVERAQALAQELTEKW 588



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 80/241 (33%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++ ++            ++  +V +      +   + V+          +P        
Sbjct: 794  KDIGTVVERSAPPTIERKDRERIVTVSAVISGAPLGSVVVAGESIIDKMDLPSGISIQVA 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + V+I  I + I +  +F+   +    + ++    +  L      
Sbjct: 854  GSYEDQQDSFSDLGTLAVLI-IILVFIVMAAQFESLTYPFIIMFSIPFAFSGVLMALYGT 912

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ ++   + LIG  V + +V+ D +          +S    +  S    L   + 
Sbjct: 913  GTTLNVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGMSVIHSVVVSGRSRLRPVLM 969

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++   + ++PMA+ GG    +     + +  G+ V+   ++ +   +         K  
Sbjct: 970  TTLTTILGMVPMAIGGGEGSEMWQPLGVSVIGGLTVSTVLTLILVPVLYCSFAGTGIKCN 1029

Query: 832  R 832
            R
Sbjct: 1030 R 1030



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 54/148 (36%), Gaps = 7/148 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +W   +    T+ + +  +  + A+  G   N+ +++ +   IG  V+D +VV + +   
Sbjct: 353 RWRATVIICITIPMSLIASFIYLAITDGGSLNIISLSCLSIAIGNVVDDAIVVLENV--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFG 804
                     +       NE     + +++       P+  V G  G +       M   
Sbjct: 410 TTHIERGSEPKQAAIHGTNEVAISVIASTLTMIAVFFPLTMVSGMSGVLFRQLGWMMCVI 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + ++  S++     +   +   + K ++
Sbjct: 470 MTISTISALSFTPMMCAQMLRLQKKQSK 497


>gi|171060634|ref|YP_001792983.1| acriflavin resistance protein [Leptothrix cholodnii SP-6]
 gi|170778079|gb|ACB36218.1| acriflavin resistance protein [Leptothrix cholodnii SP-6]
          Length = 1035

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/616 (12%), Positives = 172/616 (27%), Gaps = 49/616 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+L+ ++   G+            + +FP                   + +   
Sbjct: 9   RNPLPAVLLFVLLTLGGMAS-----FHAMKIQQFPDLELPT-------------VSIVAS 50

Query: 62  EDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   L+       +   + L+        ++     IT  F   +  +   D+V  
Sbjct: 51  LPGASPSQLETEVARKIENALATLQGLKHIYTKLQDGTATITAEFRLEKPTQEAVDEVRD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L  + ++  +         ++       ++       S  +       +   
Sbjct: 111 AVNRVRSDLPGELREPTVSKLNLAGAPVLTYTVATSRLDEE--GLSWFVDNTITKALLSV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                      +  ++  E DP+RL  L  T A +S                +     + 
Sbjct: 169 NGVGAVARVGGVTREVRVELDPARLLALGATAADVSRQLRAVQQDAASGRADLGGAEQAL 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    E+                      +       R         +   +   
Sbjct: 229 RTLASVASADEL--------------------ARLEIALADGRHVRLDQIATVLDTVTEP 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L    +     S     S     +    +   LR     ++        V   + 
Sbjct: 269 RSAALLNGKPVVGFEISRSRGASEVEVAQGVQRVLDQLRLAHPDLQFEQ-AFNLVDPVIE 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +           A L +IV++  +   +  LVA  ++ L+VI     +  LG ++ + ++
Sbjct: 328 NYDGSLALLYEGAILAVIVVWFFLRDWRATLVAATALPLSVIPAFIGMWALGFSVNVVTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + L +G+ VD  I+  E I    +  +S + +           +  +  T +   +  
Sbjct: 388 LSLSLVVGILVDDAIVEIENIVRHLKMGKSPYQAAMEAADEIGLAVIATTFTLIAVFLPT 447

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            F  G   + F    G +  +++F ++ + RA+   +  Y     +         ++   
Sbjct: 448 AFMAGIPGKFFKQ-FGWTASLAVFASLVVARALTPMMAAYLLKPIVVSGEERDGRVMSTY 506

Query: 538 IAIQFMRARFWGVGI---SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
           + +     R   V +   +  F    + +          D  G  Q+ V       L   
Sbjct: 507 LRMAAWSVRHRIVTVLGAAAFFVGSLMLIPLLPTGFIPPDDFGQSQVTVELPPGSTLHDT 566

Query: 595 RSNLESLQIGDISFQN 610
            +  E  +    +  +
Sbjct: 567 YAAAEQARAIVGAHPH 582



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 83/254 (32%), Gaps = 10/254 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           ++ +   R V L  + + L+++     +              + +    V   + ++ V 
Sbjct: 244 EIALADGRHVRLDQIATVLDTVTEPRSAALLNGKPVVGFEISRSRGASEVEVAQGVQRVL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++    P    +    +   +         +    + +A+++  +    W   L A T 
Sbjct: 304 DQLRLAHPDLQFEQAFNLVDPVIENYDGSLALLYEGAILAVIVVWFFLRDWRATLVAATA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +          G   N+  + ++  ++G  V+D +V  + +   ++      S   
Sbjct: 364 LPLSVIPAFIGMWALGFSVNVVTLLSLSLVVGILVDDAIVEIENI---VRHLKMGKSPYQ 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     + T+       LP A      G     F    +  +     +S+ +A
Sbjct: 421 AAMEAADEIGLAVIATTFTLIAVFLPTAFMAGIPGKFFKQFGWTASLAV----FASLVVA 476

Query: 817 APILLFIYDWRAKN 830
             +   +  +  K 
Sbjct: 477 RALTPMMAAYLLKP 490



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 70/172 (40%), Gaps = 7/172 (4%)

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGI 716
              ++  EL     + ++   + + + + + FK     +  +  L L +            
Sbjct: 840  DAEVMAELFASFGLAMLTGVLCIYLVLVLLFKGVMQPVTILAALPLSLGGAFVALLATNS 899

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             F++ ++  ++ L+G +  + +++ D     +      +  R+ +  + ++     V T+
Sbjct: 900  AFSMPSLIGLIMLMGIATKNSILLVD---YAILARRAGMPRREALLDACHKRARPIVMTT 956

Query: 777  MAAFISVLPMAV-WGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +A    +LP+A+ WG         AI +  G++ +   S+ +   +  ++ D
Sbjct: 957  IAMGAGMLPIALGWGTDPSFRAPMAIAVIGGLITSTVLSLLVIPVVYTYVDD 1008


>gi|220931350|ref|YP_002508258.1| acriflavin resistance protein [Halothermothrix orenii H 168]
 gi|219992660|gb|ACL69263.1| acriflavin resistance protein [Halothermothrix orenii H 168]
          Length = 1011

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/545 (11%), Positives = 148/545 (27%), Gaps = 41/545 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +   +G +      L +  LD FP                      E  
Sbjct: 9   KRPVTTTMIVLLAVLLGFIS-----LTRVNLDLFPDMSFPIA---------AVITEYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + +        +  + Q+ + + F      +     +   +  
Sbjct: 55  GPHEVENMVTKPLEQALASVTNIKTVSSTSGKNQSTVLVEFDWGTDMDKATMNMREKIDL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +    L+       + ++    + +            I      ++   +   
Sbjct: 115 MEDYLPDEASNPLIFKFDPSLMPVMELGVSGE---MDLASLKKYIDDNIAPRLERLQGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D  +++        +    ++ N +  G                
Sbjct: 172 SVELIGGKERIILVSLDRDKMKNYNVAFTSVVNSLLMENINLSGGSVRRGNRELLVRTTG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +I  I +                        +          +      V    
Sbjct: 232 KFKSLDDIKNILI---------------------PTSSGSVPLKDIATVKDTFKKVDSKA 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +   +   +            A L+  +      I           S   
Sbjct: 271 RMNKEPGVVLLIQKQTDANTVKVSSRIKKELASLKEETNGSLTIIPIMDQADYIERSIGN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I   L +++LF  +      L+   +I ++VI T  L+   G TL + ++ G+ 
Sbjct: 331 VGLNAIIGGILAVLILFYFLRNFSSTLIIATAIPVSVITTFLLIYFGGLTLNMMTLGGLA 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           LGIG+ VD+ I+V E I   ++       +   G +     I  S +T +I  + + +  
Sbjct: 391 LGIGMLVDNAIVVLENIFRYHQAGLGKVKAASRGSTEVGMAITASTLTTIIVFLPIVYVE 450

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
                  +  A+T+  S+L S+  A++++  +   II     K +               
Sbjct: 451 GIASQLFKELALTVTFSLLASLAVALTLIPMLSSKIIASANNKEVSRFEKFLEKTRDKYR 510

Query: 539 AIQFM 543
            +   
Sbjct: 511 DMLRW 515



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 70/163 (42%), Gaps = 9/163 (5%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT-KTLGFFALFGIEFNLTAV 723
                    I++ + + + +  +F+ + + L  + T+ + I    LG F +     ++ A+
Sbjct: 847  FDSLAFAFILAVVLVYMVLAAQFESFLYPLVIMFTVPMSIIGVVLGLF-ITRNHISVPAI 905

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              V+ L G  VN+ +V+ D +     L     S ++ I ++    L   + T+    + +
Sbjct: 906  IGVIMLAGIVVNNAIVLVDYIN---TLRKRGHSLKEAILEAGPVRLRPVLMTASTTILGL 962

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            LP+A+    G  V    A+ +  G+ V+   ++FI   +    
Sbjct: 963  LPLALGIGEGTEVQEPMAVVVIGGLAVSTILTLFIVPVLYSVF 1005



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/209 (15%), Positives = 74/209 (35%), Gaps = 4/209 (1%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L++ Q         +R+ + +     E     TI         I R +   G+  +I   
Sbjct: 281 LIQKQTDANTVKVSSRIKKELASLKEETNGSLTIIPIMDQADYIERSIGNVGLNAIIGGI 340

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           +A+LI  +    +   L   T + + +  T       G+  N+  +  +   IG  V++ 
Sbjct: 341 LAVLILFYFLRNFSSTLIIATAIPVSVITTFLLIYFGGLTLNMMTLGGLALGIGMLVDNA 400

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +VV + +    + +   +       +   E       +++   I  LP+    G     F
Sbjct: 401 IVVLENI---FRYHQAGLGKVKAASRGSTEVGMAITASTLTTIIVFLPIVYVEGIASQLF 457

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +A  +  +  +S+ +A  ++  +   
Sbjct: 458 -KELALTVTFSLLASLAVALTLIPMLSSK 485


>gi|126696267|ref|YP_001091153.1| preprotein translocase subunit SecD [Prochlorococcus marinus str.
           MIT 9301]
 gi|126543310|gb|ABO17552.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9301]
          Length = 487

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 129/530 (24%), Positives = 225/530 (42%), Gaps = 66/530 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           +   WL  +  ++     +  L N+                 + LGLDL+GGS L L++ 
Sbjct: 3   KRQGWLFFIIFLLTL--SVYLLINY----------------PLQLGLDLQGGSQLTLQII 44

Query: 61  -DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLF 118
            DE       L+  +  +   +   G+   +++    +++ L     +     +  +   
Sbjct: 45  KDEGKVTTDELEAVNSVIDKRVNNLGVSESNLQTLGGDQLILELPGEQNPLVASRVLGKT 104

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                             T  E   + +         I   +EQ                
Sbjct: 105 ALLEFR------------TQKEGTSTDLKILQVQRLSIKDLMEQYSFAK----------- 141

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
               +   + + +     +   +      T+  +            G +  ++   D++ 
Sbjct: 142 --NSQNEDNFLNVIKDDLKKIEQELNYSSTSNDLY-----------GKLIEIKKYVDNEI 188

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL---- 294
               ++   ++SG  L       +       V ++F   G  +F E+T+   G       
Sbjct: 189 TNLFIK--TDLSGKDLINVGRRQEQTNSNWEVLLTFSNSGGEKFAEITKSIAGTNQLLAI 246

Query: 295 ---AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                 +    +     +  I  G A ISGNF+ E A  L   L+ GSLP+ + IVE   
Sbjct: 247 ILDGESISEASVGMQFASTGITGGSATISGNFSAENARELEVQLKGGSLPLPIEIVETNT 306

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +GA LGS +I K   A ++GL+ + +FMI  Y   G V+  S+ L     LA+ SL+  T
Sbjct: 307 IGALLGSKNILKSLYAAISGLIFVGIFMIFNYRILGFVSVLSLVLYGFFNLAIYSLIPVT 366

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           LTLP I+G++L IG+AVD+NIL+ ERIREE  +  ++  S+D GF RA S+I D +IT L
Sbjct: 367 LTLPGISGLILSIGMAVDANILIFERIREELYEGNTLTRSIDSGFQRANSSIVDGHITTL 426

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           ++  VLF  G   V+GFA T+G+ +LIS+FT+++  + ++ F   Y+ ++
Sbjct: 427 LSCFVLFLLGTNFVKGFAATLGIGVLISLFTSLNCSKTILRFFTTYQSLR 476



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 98/259 (37%), Gaps = 4/259 (1%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +  G     +  +      ++   L+   I + S                  G+  A+  
Sbjct: 224 NSGGEKFAEITKSIAGTNQLLAIILDGESISEASVGMQFASTGITGGSATISGNFSAENA 283

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
               V+ K   +     I  T  +G  +  + I K +   I   I + I++   ++    
Sbjct: 284 RELEVQLKGGSLPLPIEIVETNTIGALLGSKNILKSLYAAISGLIFVGIFMIFNYRI-LG 342

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             ++ +L+L     L  ++L  +   L  ++ ++  IG +V+  +++++R+R+ +     
Sbjct: 343 FVSVLSLVLYGFFNLAIYSLIPVTLTLPGISGLILSIGMAVDANILIFERIREELYE--- 399

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             +    ID          V   +   +S   + + G + +  FA  +  G++++  +S+
Sbjct: 400 GNTLTRSIDSGFQRANSSIVDGHITTLLSCFVLFLLGTNFVKGFAATLGIGVLISLFTSL 459

Query: 814 FIAAPILLFIYDWRAKNAR 832
             +  IL F   +++   +
Sbjct: 460 NCSKTILRFFTTYQSLRQK 478


>gi|257068564|ref|YP_003154819.1| protein-export membrane protein SecD [Brachybacterium faecium DSM
           4810]
 gi|256559382|gb|ACU85229.1| protein-export membrane protein SecD [Brachybacterium faecium DSM
           4810]
          Length = 661

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 105/509 (20%), Positives = 193/509 (37%), Gaps = 31/509 (6%)

Query: 45  SLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITL 100
            L LDL GG+ ++L+    D     +  ++     +   +   G+    +       I +
Sbjct: 36  KLALDLEGGTQIILQAQSRDGSAIDSAAMEQARQIMSQRINAMGVAETEITVQGGTNIVI 95

Query: 101 SFADSRFKENIADKVTLFLQGVNSKL------------NVDPKKNLLVTTTEKEISIVLS 148
                  +                 L              D          E        
Sbjct: 96  DVPGQLDQATSQAIRQTAAMSFRPVLAMIAPEGAEEAQPSDGGGEASDGGGEAAEPSDAG 155

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
               ++      + S  +    + +   S  +               +     +   L +
Sbjct: 156 GGADEETSEEPADPSQHVFDGLVGEDPDSAPSAAPAEGELPYPAWAMDWLTPEIESELMS 215

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
              +         +       V         +YL+  +V       + + +     T + 
Sbjct: 216 ADCVDPAAQQEKVADAAADEPVVACDPDGSVKYLLGPEVVAGAAIASSSVSADVTPTGQA 275

Query: 269 ----VVDISFDEMGARRFFEVTRDNIGKP-----LAVVLDGRVLTAPVINQAIPSGKAQI 319
               VV++ F   G + F E+T              +VLDG V++AP +  A  +G+AQI
Sbjct: 276 TGYYVVNMGFTGEGGQAFGEMTTALYNGEGATGAFGIVLDGLVISAPEVQGATTNGEAQI 335

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           SGNF+ E A  L+  LR G+LP++  +  E+ + A LG+D +  G  A + GL L+VL+ 
Sbjct: 336 SGNFSQEEASQLSDQLRFGALPLEFEVASEQQISATLGADQLEMGMIAGLIGLALVVLYA 395

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLG------ATLTLPSIAGIVLGIGLAVDSNIL 433
           +  Y    +V   S+ +  +LT   L++L         L+L  + G+++ I    DS I+
Sbjct: 396 VGQYRLLAMVTTASLAIMGLLTYGTLTVLSNIPEIGYRLSLAGVVGLIVAIAFTADSFIV 455

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
             ER+R+E R+ + +  ++D G+ RA  TI  S+   LIA VVL+    G VRGFA  +G
Sbjct: 456 YFERVRDEIREGRGIVAAVDHGWDRAKRTILASDAVNLIAAVVLYLLSTGGVRGFAFVLG 515

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKS 522
           L+ ++ +         ++  ++R +    
Sbjct: 516 LTTVLDLVVVFLFTHPVLQALVRTRFFGK 544



 Score = 94.4 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/269 (11%), Positives = 87/269 (32%), Gaps = 13/269 (4%)

Query: 566 THGLNYGIDFKGGIQL-GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
            + +N G   +GG     +            +    L    IS     G           
Sbjct: 278 YYVVNMGFTGEGGQAFGEMTTALYNGEGATGAFGIVLDGLVISAPEVQGATTNGEAQISG 337

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                  +++ + ++     +     + + + +   +  + +  G++  +I    +++Y 
Sbjct: 338 NFSQEEASQLSDQLR--FGALPLEFEVASEQQISATLGADQLEMGMIAGLIGLALVVLYA 395

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALF------GIEFNLTAVAAVLTLIGYSVNDKV 738
             +++   A+    +L +    T G   +       G   +L  V  ++  I ++ +  +
Sbjct: 396 VGQYRL-LAMVTTASLAIMGLLTYGTLTVLSNIPEIGYRLSLAGVVGLIVAIAFTADSFI 454

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V ++R+R  ++           +D   +      + +     I+ + + +     +  FA
Sbjct: 455 VYFERVRDEIRE---GRGIVAAVDHGWDRAKRTILASDAVNLIAAVVLYLLSTGGVRGFA 511

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +    V+          P+L  +   R
Sbjct: 512 FVLGLTTVLDLVVVFLFTHPVLQALVRTR 540


>gi|86158444|ref|YP_465229.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774955|gb|ABC81792.1| Acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1041

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/516 (13%), Positives = 146/516 (28%), Gaps = 34/516 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ +     GL+        +  +   P+                    L   
Sbjct: 9   RRPVMTTLVMASFIAFGLVA-----YQKLPVSDLPNVDFPTI---------SVSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        S      +ITL F   R  +  A  V   +  
Sbjct: 55  SPETMASSVATPLERQFSTIAGLTAMNSSSGLGTTQITLEFDLDRNIDAAAQDVQSAISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +      +       + ++   ++        + +         ++       
Sbjct: 115 AGRQLPQNMPSPPTLRKVNPADAPIVY-FSLTSPTLPLSDLNRFAQDVVAQRVATIAGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP  L        + +      N +    +        +     
Sbjct: 174 QVLVYGPQKYAVRIELDPQALAARGIGLDEATAAIAAANPNLPAGLVQGGARAFTVEATG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                    V+                RD +   LA     +
Sbjct: 234 GLMRARD----------------FADVVLAFRNGAPVRVADVGRARDGVENELAAAWLWK 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +     +    L   LRA         +          S + 
Sbjct: 278 DGREQRAIVLAVQRQPGTNTVAVAQAVRQLLPTLRAQLPGAAQLELLYDRSETIEESVTD 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV++V+F+ +      ++   ++ +++I T AL+  LG +L   S+  + 
Sbjct: 338 VKFTLLLTLVLVVLVIFVFLRNLPATVIPSLALPVSLIGTFALMFQLGYSLDNLSLMALT 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E +       +  F +   G      TI    I+     + + F G
Sbjct: 398 LAVGFVVDDAIVMLENVVRHMEMGERPFEAALNGSKEIAFTIVSMTISLAAVFLPVLFMG 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G     FA+T+G +IL+S F ++++   +    
Sbjct: 458 GIVGRLFHEFAVTIGAAILVSGFVSLTLTPMLCSRF 493



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 64/155 (41%), Gaps = 7/155 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + + I ++ +      +T L       L    LF +E +L A   ++ L+G 
Sbjct: 864  VMAVLVIYVVLGILYESFAHPFTILTALPFAGLGALVTLLLFRVELSLYAFVGIVMLVGL 923

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   +  +      +  + I ++        + T+MAA +  LP+A+    
Sbjct: 924  VKKNGIMMVDFAVEAQRG---GRTPGEAIREACLVRFRPIMMTTMAALMGTLPIALGFGA 980

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            G        + +  G+V +   ++F+     + + 
Sbjct: 981  GAESRRPLGLAVVGGLVFSQLLTLFVTPVFYVAME 1015



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 50/142 (35%), Gaps = 10/142 (7%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +     L + +  T       G   +  ++ A+   +G+ V+D +V+ + +   ++    
Sbjct: 364 VIPSLALPVSLIGTFALMFQLGYSLDNLSLMALTLAVGFVVDDAIVMLENV---VRHMEM 420

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
                +       E     V  +++     LP+   GG V      FA+ +   I+V+  
Sbjct: 421 GERPFEAALNGSKEIAFTIVSMTISLAAVFLPVLFMGGIVGRLFHEFAVTIGAAILVSGF 480

Query: 811 SSIFIAAPILLFIYDWRAKNAR 832
            S+ +       +     +  +
Sbjct: 481 VSLTLTP----MLCSRFLRPGK 498


>gi|116620700|ref|YP_822856.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223862|gb|ABJ82571.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1097

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/521 (12%), Positives = 149/521 (28%), Gaps = 42/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                 +L   I   G++        Q  +   P                   +      
Sbjct: 10  RPVATSLLMVGILLAGIVA-----YQQLPVSALPEVDYPT-----------IQVTTFYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D +   +    +     +        +     + ITL F  S   +    +V   + 
Sbjct: 54  ASPDVMASSVTAPLERQFGQVPGLQQMTSTSSDGASVITLQFKLSLNIDVAEQEVQQSIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  D     L + T    + +L+  ++        +       +   +I      
Sbjct: 114 ASGTFLPPDLPTPPLYSKTNPADTPILT-LSLTSKTMALSKVEDLADTRLAPKISQLPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  + +P+ L         +       N ++    F  RF     G  
Sbjct: 173 GLVTISGGQKPAVRIQANPTMLASYGLNLEDVRSAITAANVNQAKGTFDGRFQSYQIGAN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    +                       +                 +          
Sbjct: 233 DQLLSSSD--------------------YSTVILAYRNGAPVKLTDVAVVKDDTENTRQA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +   +    ++    L   L A         V          S  
Sbjct: 273 AWMNQSPAVIVNIQRQPGANIIAVVDGVKKLLPQLTATLPRDVEMKVLTDRTNTIRASVK 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   LV++V+F+ +      ++   ++ L+++ TLA++ LLG +L   ++  +
Sbjct: 333 DVEFELGLTVVLVILVIFVFLRNFSATIIPSVAVPLSLVGTLAIMYLLGYSLNNLTLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I++ E I     + +    +   G  +   TI    ++ +   + L F 
Sbjct: 393 TISTGFVVDDAIVMIENIERYIEQGEKPLAAALKGSEQIGFTIISLTVSLIAVLIPLLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           G   G   R FA+T+ ++IL+S   ++++   M   +++++
Sbjct: 453 GDIVGRLFREFAVTLSVTILVSAVVSLTLTPMMAAKLLKHR 493



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 53/141 (37%), Gaps = 6/141 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + L +  TL    L G   N   + A+    G+ V+D +V+ + +    +
Sbjct: 356 FSATIIPSVAVPLSLVGTLAIMYLLGYSLNNLTLMALTISTGFVVDDAIVMIENI---ER 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                        K   +     +  +++    ++P+   G   G +   FA+ ++  I+
Sbjct: 413 YIEQGEKPLAAALKGSEQIGFTIISLTVSLIAVLIPLLFMGDIVGRLFREFAVTLSVTIL 472

Query: 807 VAASSSIFIAAPILLFIYDWR 827
           V+A  S+ +   +   +   R
Sbjct: 473 VSAVVSLTLTPMMAAKLLKHR 493



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 92/240 (38%), Gaps = 6/240 (2%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
                +++           +  +V L +    + +    +  V +   EI   ++ Q    
Sbjct: 845  AFSHVELASAPITVNHQGQFPVVTLSFNLAPNASLGEAMNAVNRAKEEIGLPASFQAEFQ 904

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                  +  +    V ++ + + + I + + ++ +   +  ++TL       L    +  
Sbjct: 905  GTAAAFQASLANEPVLILAALVTVYIVLGVLYESYIHPITILSTLPSAGVGALLALIICR 964

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             +F++ A+  ++ LIG    + +++ D   +         +  D I ++        + T
Sbjct: 965  QDFSVIALIGIVLLIGIVKKNAIMMIDFALE--AEREEGKAPPDAIFQAAMLRFRPIMMT 1022

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +MAA +  +P+A+    G  +     I +  G++++ + +++    I L+      + +R
Sbjct: 1023 TMAALLGAVPLALGSGTGSELRRPLGIAIIGGLILSQALTLYTTPVIYLWFERLARRFSR 1082


>gi|163840738|ref|YP_001625143.1| preprotein translocase subunit SecF [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954214|gb|ABY23729.1| protein-export membrane protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 340

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 137/320 (42%), Gaps = 14/320 (4%)

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-LNYGIDFKGGIQ 580
                      L     +   +  R     I+ +  + SI      G  N GIDF+GG +
Sbjct: 3   KFTNFSTFGNELYTGKRSYDIVGKRKIWFTIAAVMVLISILSPILRGGFNLGIDFRGGSE 62

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
             VL    + +      +  +  G     +        V+      D ++    +++   
Sbjct: 63  FTVLKVTNLSVDTGTKAVTDVVPGQSPRVSVLSGNGIQVQT-----DKLSDDETIKVKDS 117

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
            +      S+   +  VGP    ++ ++ ++G+I+  +   I + + F+ W  +L A+  
Sbjct: 118 LVKAYGVTSSDVASSFVGPTWGADVTKQALIGLIVFVVLATILMALYFRTWKMSLAAVFG 177

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISF 757
           ++     T G +++  +E   +A+   LT++ YS+ D VVV+D++R+N       T  +F
Sbjct: 178 MLFVQVTTAGIYSITNVEVTPSAIIGFLTILSYSLYDIVVVFDKIRENTSDIGTSTRRTF 237

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPM-----AVWGGSVIGSFAIPMAFGIVVAASSS 812
              ++ ++N+TL RS+ TSM A + V  +      + G   +   ++ +  GI++   ++
Sbjct: 238 SSEVNLAVNQTLVRSINTSMVALLPVASILFIGSFLLGAGTLRDLSLSLFIGIIMGGLTT 297

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           +FIA+P+   +       A+
Sbjct: 298 VFIASPLYAMLRQNEPALAK 317


>gi|62180701|ref|YP_217118.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|75482384|sp|Q57MM4|MDTC_SALCH RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|62128334|gb|AAX66037.1| putative resistance protein (efflux transporter), outer membrane
           [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322715175|gb|EFZ06746.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 1026

 Score =  148 bits (373), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVIMVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + M++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVIMVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPAQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|224583381|ref|YP_002637179.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|254810281|sp|C0Q1F2|MDTC_SALPC RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|224467908|gb|ACN45738.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 1026

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVIMVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + M++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVIMVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPAQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|322615157|gb|EFY12079.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617749|gb|EFY14645.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624657|gb|EFY21488.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626892|gb|EFY23688.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634078|gb|EFY30814.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635731|gb|EFY32441.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640264|gb|EFY36927.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646318|gb|EFY42831.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649411|gb|EFY45847.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656531|gb|EFY52820.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661507|gb|EFY57731.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665605|gb|EFY61789.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667129|gb|EFY63296.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671135|gb|EFY67263.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675224|gb|EFY71301.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680833|gb|EFY76868.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687008|gb|EFY82985.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192772|gb|EFZ77999.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198796|gb|EFZ83895.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204928|gb|EFZ89919.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208237|gb|EFZ93181.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323210953|gb|EFZ95814.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215738|gb|EGA00481.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323227224|gb|EGA11395.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231183|gb|EGA15298.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233618|gb|EGA17710.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237688|gb|EGA21748.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245671|gb|EGA29665.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247748|gb|EGA31690.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252964|gb|EGA36797.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323256766|gb|EGA40491.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323259472|gb|EGA43107.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268255|gb|EGA51730.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323271955|gb|EGA55371.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 1026

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNANPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLIGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|322509298|gb|ADX04752.1| nolG [Acinetobacter baumannii 1656-2]
 gi|323519325|gb|ADX93706.1| cation/multidrug efflux pump [Acinetobacter baumannii TCDC-AB0715]
          Length = 1011

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/616 (10%), Positives = 160/616 (25%), Gaps = 48/616 (7%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +GL         +  ++ FP+      +                   + V   +    
Sbjct: 1   MVLGLAS-----WKRMTVEEFPNIDFPFVV---------VTTQYAGASPEAVESDITKKL 46

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
           ++  + +           +  + +   F         A  V   +  V ++   +    +
Sbjct: 47  EDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAPVIAQFRDEIDTPI 106

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
           +         I+      +       + S  + ++ + Q+                 Q+ 
Sbjct: 107 VQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVGNVNLLGDAKRQIR 164

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
            +  P +L+       ++       N          +        Q  V           
Sbjct: 165 IKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQSKV----------- 213

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPS 314
                           D+          F      +    A +                 
Sbjct: 214 ---------IHPLGFGDLVIANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDIL 264

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
             +  +    ++        L+A         V   +      S      T    A L +
Sbjct: 265 KSSDANVIQVVDKTYQTLEKLKAQMPAALNYKVVADSSKGIRASIKDVVRTIIEGAVLAV 324

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + L IGL +D  I+V
Sbjct: 325 LIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVV 384

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAIT 491
            E I       +    +   G       +  + +T +   + + F G   G     F +T
Sbjct: 385 RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVT 444

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM-------- 543
           +  ++LISMF + ++   +        K K   +     +                    
Sbjct: 445 VSTAVLISMFISFTLDPMLSAHWKDPVKKKESRLQRFFNYISNLLDGLTHIYEKLLKLAL 504

Query: 544 RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           R RF  V I  +   +                 KG I++         L   ++ L  + 
Sbjct: 505 RFRFITVIIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDSSLEYTQAKLHQVD 564

Query: 603 IGDISFQNFDGEKNFL 618
                F +       +
Sbjct: 565 QIIRQFPDVVSTYGVV 580



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 85/256 (33%), Gaps = 12/256 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+AN+      ++              +        V +           +V++   + +
Sbjct: 223 VIANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDILKSSDANVIQVVDKTYQTL 282

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRFKWYFALGAIT 698
            ++           V    S+ +           +  + +A+LI +     +   +    
Sbjct: 283 EKLKAQMPAALNYKVVADSSKGIRASIKDVVRTIIEGAVLAVLIVLLFLGSFRSTVITGL 342

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISF 757
           TL + +  TL F   FG   N+  + A+   IG  ++D +VV    R+N+  +T      
Sbjct: 343 TLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVV----RENIVRHTELGKDH 398

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIF 814
                    E     + T++      LP+A  GG +      F + ++  ++++   S  
Sbjct: 399 VTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTAVLISMFISFT 458

Query: 815 IAAPILLFIYDWRAKN 830
           +   +     D   K 
Sbjct: 459 LDPMLSAHWKDPVKKK 474



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669 GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 840 ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 899

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 900 MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 956

Query: 788 VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 957 LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 999


>gi|311029362|ref|ZP_07707452.1| acriflavin resistance protein [Bacillus sp. m3-13]
          Length = 1022

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 83/604 (13%), Positives = 176/604 (29%), Gaps = 41/604 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + ++  ++  +G +      +    +D FP                      E   
Sbjct: 10  RPIAMSMVIILMLILGAVS-----MRGMPVDLFPELTFPIV---------AVTTTYEEAG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    ++  S L          R   + + +SF      +  +  +   +  V
Sbjct: 56  PEEIENLISSPLEDAMSTLPNVESVTSISRTGGSLVLVSFTWGTNMDFASLDMRERIDSV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L        ++     ++ IV              +Q  E  +    Q+   +    
Sbjct: 116 RDFLPSGANLPRVLRFNPSDLPIVQLAITDPSGEMTKAKQLAE--QDIEPQLSSVDGIAS 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP+ L     +  ++       N +  G     +           
Sbjct: 174 ISVEGGAENEVRITLDPNALSSFDVSIDQLQQIIAAENLNLPGGSLTDQNQNL------- 226

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               + I+G + +       P      V                   + + L        
Sbjct: 227 ---PIRITGEYASIYDIQTLPIPTPKGVIQLDQLG-----------EVKETLQPTTQLSY 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L            ++  +              +R                     S    
Sbjct: 273 LNGEPAVGMSILKQSGSNTVTVANNIEEKLEEIRKNLPEGVEIKPIFDQSQFIEQSIRAV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                  + L  +VLF  +   +  L+  FSI ++++ T   +   G TL L ++ G+ L
Sbjct: 333 TTNMIAGSLLAALVLFFFLRNIRSTLIILFSIPVSIVATFIFMYFSGQTLNLLTLGGLAL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           GIG+ VD+ I++ E I    +K  S+  +   G S     I  S +T +I  + + F  G
Sbjct: 393 GIGMMVDNAIVILENIYRLRQKGYSMKDAAIEGTSEVGPAIIASTLTTVIVFLPIVFVDG 452

Query: 483 ---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 +  A+ +  S+L S+FTA+ IV      +++     S      + F      I 
Sbjct: 453 LAAQLFKPLALVVSFSLLASLFTALIIVPLFSSLLLKVNTNTSRFEERFTGFTNWYRSIL 512

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSNL 598
            + +R     V   ++  + S+  +   G  +     +  I + V       L      +
Sbjct: 513 EKVLRNPKKTVTSIVILFLISLIGIPFIGKEFLPQQDQSFISMTVRLPDGSSLDATYDVM 572

Query: 599 ESLQ 602
           E + 
Sbjct: 573 EEID 576



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 91/278 (32%), Gaps = 10/278 (3%)

Query: 554  ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                      L                L  L         +     +           + 
Sbjct: 733  ASRMARDGAELDIRLTIEDTYTASIQDLEKLLINTPTGENIPLQAVATVERGQGPSQINR 792

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                          +     V++ V++ + E + +   Q    +G +  +       +G 
Sbjct: 793  TNRNREITVNADIVNRDLGSVIDDVEQTLKENIYIPNNQYKITIGGQDEQMNDAFFKLGG 852

Query: 674  IISAIAMLIYIWIRFKW---YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             ++   +L+Y+ +  ++   ++    + ++ L +   +    + G    + ++  +L L 
Sbjct: 853  ALALAVVLVYMVMAGQFESYFYPFIIMFSVPLTVIGIITGLLVTGQPLGVGSLVGMLILT 912

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---A 787
            G  VN+ +V  D +     +     +  D I  +    L     T++   + ++P+    
Sbjct: 913  GIVVNNAIVFVDYVN---MMKRDGKTTWDAILIAGPTRLRPIFMTALTTILGLIPLTLGF 969

Query: 788  VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G  +    AI + FG+  A   ++ I  P++ +++D
Sbjct: 970  GEGMEIQQPMAIVIVFGLSFATIITL-ILIPVVYYLFD 1006



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 72/205 (35%), Gaps = 6/205 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q           + E +++    +     I+        I + +       +  
Sbjct: 280 GMSILKQSGSNTVTVANNIEEKLEEIRKNLPEGVEIKPIFDQSQFIEQSIRAVTTNMIAG 339

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S +A L+  +        L  + ++ + I  T  F    G   NL  +  +   IG  V+
Sbjct: 340 SLLAALVLFFFLRNIRSTLIILFSIPVSIVATFIFMYFSGQTLNLLTLGGLALGIGMMVD 399

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           + +V+ + +    +L     S +D   +  +E     + +++   I  LP+         
Sbjct: 400 NAIVILENI---YRLRQKGYSMKDAAIEGTSEVGPAIIASTLTTVIVFLPIVFVDGLAAQ 456

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAA 817
           +    A+ ++F ++ +  +++ I  
Sbjct: 457 LFKPLALVVSFSLLASLFTALIIVP 481


>gi|312959067|ref|ZP_07773586.1| acriflavin resistance protein [Pseudomonas fluorescens WH6]
 gi|311286837|gb|EFQ65399.1| acriflavin resistance protein [Pseudomonas fluorescens WH6]
          Length = 1029

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 74/555 (13%), Positives = 166/555 (29%), Gaps = 26/555 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     D +   +    +   S +        S     +++TL F  ++  +  A 
Sbjct: 49  VTATLPGASPDTMASSVATPLEVQFSAIPGMTQMTSSSALGSSQLTLQFTLNKSIDTAAQ 108

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +   + KL  D              S VL   ++      + E S  +      Q
Sbjct: 109 EVQAAINTASGKLPSDMPSLPTWKKVNPADSPVLI-LSVSSDSMPSTELSDYVETLLARQ 167

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I   +   Q   + +    +  +  P +L  +  T A +                     
Sbjct: 168 ISQIDGVGQINITGQQRPAIRVQASPDKLAAIGLTLADLRLSI----------------- 210

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                +   +          ++  + N      +    +                 +   
Sbjct: 211 ---QQSSLNLAKGAIYGENSVSTLSTNDQLFKAQDYAQLIVSYKNGAPVQLRDIAKVING 267

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             + S +   +   T++        L+A         V      
Sbjct: 268 SENAYVQAWSGDTPGVNLVISRQPGANIVETVDRIQAELPRLQAMLPASVQVSVLTDRTK 327

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  I   LV+ V+ + +      L+    + ++++ + AL+ ++G +L 
Sbjct: 328 TIRASLHEVEVTLLIAILLVVAVMALFLRQLSATLIVSSVLGVSLVASFALMYVMGFSLN 387

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  IV+ +G  VD  I+V E I            +   G      T+   + + + A
Sbjct: 388 NLTLVAIVIAVGFVVDDAIVVVENIHRHLEAGLDKREAAIKGAGEIGFTVVSISFSLVAA 447

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   + FA+T   +ILIS+  ++++   +    +R    ++ D    S 
Sbjct: 448 FIPLLFMGGVVGRLFKEFALTATSTILISVVVSLTLAPTLAALFMRAPSHRAHDKPGFSE 507

Query: 531 FFLIPDCIAIQF--MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
             L      ++      R       +  ++  +  +F     + +   G +     A   
Sbjct: 508 RLLAGYARYLRRALAHQRSMAAIFIVTLALAVVGYVFIPKGFFPVQDTGFVLGTSEAAAD 567

Query: 589 VDLSVVRSNLESLQI 603
           V    + +  ++L  
Sbjct: 568 VSYPDMVAKHKALAE 582



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 91/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      +R   + +   + ++          V L             ++ ++ ++
Sbjct: 247 IVSYKNGAPVQLRDIAKVINGSENAYVQAWSGDTPGVNLVISRQPGANIVETVDRIQAEL 306

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    ++ +        V ++I+ + ++  + +  +   A   +++
Sbjct: 307 PRLQAMLPASVQVSVLTDRTKTIRASLHEVEVTLLIAILLVVAVMALFLRQLSATLIVSS 366

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     + G   N   + A++  +G+ V+D +VV + +    +     +  R
Sbjct: 367 VLGVSLVASFALMYVMGFSLNNLTLVAIVIAVGFVVDDAIVVVENIH---RHLEAGLDKR 423

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 424 EAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATSTILISVVVSLTL 483

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 484 APTLAALFMR 493



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 87/202 (43%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   +I   ST+        +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 820  DAVIMLNQAKNDIGMPSTLIGNFQGAAQAFQSSLSSQPWLILAALVAVYIILGVLYESFV 879

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    L G +F++ A+  ++ LIG    + +++ D   +  ++ 
Sbjct: 880  HPLTIISTLPSAGLGALIMLWLMGQDFSIMALIGLVLLIGIVKKNGILMIDFALEAQRV- 938

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  + I ++        + T++AA +  +P+ +    G  +     I +  G++V+
Sbjct: 939  -RGLAPEEAIYEACVTRFRPIIMTTLAALLGAVPLMLGSGPGAELRQPLGIAVVGGLLVS 997

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
             + ++F    I L++  +  + 
Sbjct: 998  QALTLFTTPVIYLYLERFFHRP 1019


>gi|146278306|ref|YP_001168465.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145556547|gb|ABP71160.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 1049

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/634 (11%), Positives = 171/634 (26%), Gaps = 47/634 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L ++I   GL       L  + +   P                      +  
Sbjct: 22  RRPILAFVLNALILIAGLAA-----LYGADVRELPDVDSPVIT---------VTTTFDGA 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   S +        S R  ++++T+ F D    +  A  +   +  
Sbjct: 68  SSETIDQEVTDEIEGAASRVAGVKSISASSRFGRSQVTVEFNDDTNLDVAASDMRDSISR 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D  +  +V       +++            A E +  +  Q   ++  +    
Sbjct: 128 IRNNLPDDADEPRIVKADANSEAVMRVAVTSP--RRSAQELTQLVEDQIESRLLAAPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D  +L     T A +                             
Sbjct: 186 DLQIYGDRAPIFRVDIDLMQLASRGLTLASLRTALANVAYDAPAGSLTSDRQSLVVRTTA 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V        + +                        A         ++           
Sbjct: 246 TVSTPAAFEALEI------------------------APNVRLGDVASVEIGPEPGASYL 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +     E    + A L+          V   +     G+   
Sbjct: 282 RANGQNGVGLGIIRQAQSNTLEISEAVREIVAGLQDDLPDDVRIFVTSDDATFINGAIHE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   +V+ ++++ +   +  L+   +I + ++ TLA + L G ++ + ++  +V
Sbjct: 342 VEIALGISVLIVVAIIYLFLRDFRATLIPTLAIPVALVGTLAAIWLAGFSINILTLLALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+V E I     +      +  +G  + +  +  +  T     + L F  
Sbjct: 402 LATGMVVDDAIVVLENIVRWRSQGIGARAAAVLGTQQVFFAVIATTTTLAAVFIPLSFLP 461

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFLI 534
           G      R F  T+ +S+L+S  TA+S+   +    +R                +     
Sbjct: 462 GQTGGLFREFGFTLAISVLLSSITALSLCPVLASRFLRAGDGGEARGPVVWLGRTLAAFY 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +              +      +             + +  I + V A + V L   
Sbjct: 522 RRTLHWALDAPFVVLAIAAGFALTATFLFGTLKQELTPPEDRSVILMSVQAPQGVALDYT 581

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
              +  ++      ++     N          D+
Sbjct: 582 DRKMREIEDLIGPLRDRGEVVNVFAIAGSGSRDN 615



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 81/241 (33%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  V S     + G    +        L  ++    +++  +  +  +   +
Sbjct: 256 LEIAPNVRLGDVASVEIGPEPGASYLRANGQNGVGLGIIRQAQSNTLEISEAVREIVAGL 315

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTLI 701
            + +P                  I +  + + IS  I + I       +   L     + 
Sbjct: 316 QDDLPDDVRIFVTSDDATFINGAIHEVEIALGISVLIVVAIIYLFLRDFRATLIPTLAIP 375

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  TL    L G   N+  + A++   G  V+D +VV + +   ++  +  I  R   
Sbjct: 376 VALVGTLAAIWLAGFSINILTLLALVLATGMVVDDAIVVLENI---VRWRSQGIGARAAA 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
                +     + T+       +P++   G        F   +A  +++++ +++ +   
Sbjct: 433 VLGTQQVFFAVIATTTTLAAVFIPLSFLPGQTGGLFREFGFTLAISVLLSSITALSLCPV 492

Query: 819 I 819
           +
Sbjct: 493 L 493



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 64/172 (37%), Gaps = 10/172 (5%)

Query: 666  IRKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTA 722
               G+      + + +L+ +  +F+ + +   +   +  +      FAL   G   N+ +
Sbjct: 855  TSSGLTATFGFAIVIVLLVLAAQFESFVSAFIVMATV-PLGLACAVFALVATGGSLNVYS 913

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ L+G    + +++ +      +L     S R  I+ +    L   + T +A  + 
Sbjct: 914  QIGLVLLVGIMAKNGILIVEFAN---QLRDEGYSVRQAIEDACAIRLRPVMMTMIATVLG 970

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             LP+ +    G          +  G+ +A  +++++     L +       A
Sbjct: 971  GLPLVLAFGAGAEAREVLGWIIVGGLGLATIATLYLTPVAYLLLAGLSKPKA 1022


>gi|302038781|ref|YP_003799103.1| putative RND efflux system, multidrug resistance protein
           [Candidatus Nitrospira defluvii]
 gi|300606845|emb|CBK43178.1| putative RND efflux system, multidrug resistance protein
           [Candidatus Nitrospira defluvii]
          Length = 1027

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/497 (13%), Positives = 137/497 (27%), Gaps = 33/497 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           L    + ++P     + I            V      + V GFL    + + S +     
Sbjct: 30  LTTLPVQQYPKIESSSII---------ITTVYYGAAAETVRGFLTTPIERVVSAISGVDY 80

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              + R   + +T+    +        +VT  LQ V S+L  + +   +           
Sbjct: 81  LESTSRAGVSTVTVHLKLNHNSTAALAEVTARLQQVRSELPAEAEPPAVEVQRADRPYAS 140

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               +           +  ++R    Q+       +        I +    DP RL    
Sbjct: 141 FY-LSFTSPERTVPALTDWLLRTLQPQLATLTGVQRVTIEGGRQIAMRVWIDPDRLAAYN 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N            +      Q  +    ++  ++             
Sbjct: 200 LSPGDVQAALRRNNYLAAVGRTKGNLV------QVNLLANTDLRSVNEFQE--------- 244

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +   +             + K                           +      
Sbjct: 245 -----LIVADRSGAIVRLRDVARVEKGAEEAEMVAKYNRLEGVYLGVWPLVGSNEIEVAH 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   +R          +          +      T      +V  V+F+ +   + 
Sbjct: 300 RLREEMDRIRPTLPKDIDMQLVWDGTMFMESALKEITKTLGETILIVATVVFLFMGSIRT 359

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            LV   ++ +++I     +   G +L L +I  IVL +GL VD  I+V E +    R+ +
Sbjct: 360 ALVPLVAMPVSLIGAAIFMYAFGFSLNLLTILAIVLSVGLVVDDAIVVVENVERHVREGK 419

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           S   +  +G       I    IT       + F G   G     FAIT+  ++++S   A
Sbjct: 420 SRIQAALIGSRELVGPIIAMTITLAAVYAPIGFQGGLAGSLFLEFAITLAAAVVLSGVVA 479

Query: 504 ISIVRAMMIFIIRYKKM 520
           I++   M    +  +  
Sbjct: 480 ITLSPVMSSRFVHPEGK 496



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 79/204 (38%), Gaps = 9/204 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             ++ ++  + + + +  + +  +      +E+ +     ++I A  + +++        
Sbjct: 303 EEMDRIRPTLPKDIDMQLVWDGTMFMESALKEITKTLGETILIVATVVFLFMG---SIRT 359

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           AL  +  + + +     F   FG   NL  + A++  +G  V+D +VV + +    +   
Sbjct: 360 ALVPLVAMPVSLIGAAIFMYAFGFSLNLLTILAIVLSVGLVVDDAIVVVENV---ERHVR 416

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              S          E +G  +  ++       P+   G   GS+   FAI +A  +V++ 
Sbjct: 417 EGKSRIQAALIGSRELVGPIIAMTITLAAVYAPIGFQGGLAGSLFLEFAITLAAAVVLSG 476

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             +I ++  +         K  ++
Sbjct: 477 VVAITLSPVMSSRFVHPEGKEGKL 500



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/170 (13%), Positives = 58/170 (34%), Gaps = 10/170 (5%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI-TKTLGFFALFGIEFNLTAVA- 724
                + V +    +LIY+ +  ++      +  L+  +     G      ++     +  
Sbjct: 842  EGSALTVTLGFAVVLIYLVLAAQFKSFRDPLIVLLGSVPLAISGALVFSFLDLTTINIYS 901

Query: 725  --AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++TL+G    + +++ +       L    +S    + ++    L   + TS A    
Sbjct: 902  QVGLITLVGLIAKNGILIVEFAN---TLQERGLSKTAALREASLTRLRPVLMTSAATVFG 958

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             LP+ +    G +   S  + +  G+ V    ++F+       I      
Sbjct: 959  HLPLVLVSGPGAAARNSIGMVLVTGMTVGTIFTLFVVPVFYSLIAARHQP 1008


>gi|50086390|ref|YP_047900.1| RND family multidrug transporter outer membrane protein
           [Acinetobacter sp. ADP1]
 gi|49532366|emb|CAG70078.1| multidrug transport protein, outer membrane (RND family)
           [Acinetobacter sp. ADP1]
          Length = 1058

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/616 (10%), Positives = 170/616 (27%), Gaps = 33/616 (5%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    +     +        +      +ITL F  +R     A  V   + 
Sbjct: 54  ASPEVMAATVATPLERNLGRIAGVNEITSASSLGTTRITLQFDLNRDINGAARDVQGAIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L    + N          + ++    +        +           ++   +  
Sbjct: 114 ASLASLPSGLQNNPTYRKANPADAPIMI-LALTSKTLSRGQIYDAADTILGQKLLQIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +  E +PS+L         +       N ++       +         
Sbjct: 173 GDVNIGGSAQPAVRVELNPSQLAHYGIGLDAVRSAITSTNANRPKGFVEQKNQLWEVKAN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  +                     + +                 +   +    + 
Sbjct: 233 DQARQAADF--------------------IPLIVSYKNGAAIRISDVAQVQDSILDRHNA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      +   +   +   TI+        L+                     S  
Sbjct: 273 GYYADQPAVLMMVFKQPNANVIETIQRIRDTLPTLQQALPSQIEIHTAVDRSKTIQASLR 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  I   LV++V+F+ +  G+  L+   ++ +++I T  L+   G +L   S+  +
Sbjct: 333 EIERTLLIAVMLVIMVVFVFLRNGRATLIPAITVPISLIGTFGLMYASGFSLNNISLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I+V E I     +  S   +   G      T+   +I+ +   V +   
Sbjct: 393 TIATGFVVDDTIVVLETISRRIEEGLSPMQAAITGAKEVSFTVVSMSISLIAVFVPILLM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G     FA+T+  +ILISM  +++    +  + ++ +++K +    L         
Sbjct: 453 GGIVGRLFHEFAMTLTYAILISMLVSLTTTPMLCAWWLKSRQIKQMRPELLKIERSETTP 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           I+            + ++ S               + +K  + + +       +  + + 
Sbjct: 513 ISNS---------EMLLVASDDEYLKQQGLFGRMTLLYKRSLAIALQYKAMTLIIFIFTI 563

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
             ++ +  +  + F  +++  V +     D       +    K    ++      +  + 
Sbjct: 564 GLNVYLYIVVPKGFFPQQDTGVMMGSLVADQNISFDAMNTKLKHDMAVIGKDPAVDHVMG 623

Query: 658 GPKISRELIRKGIVGV 673
               S+       + +
Sbjct: 624 TISGSQMNRANLFLAL 639



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 66/203 (32%), Gaps = 6/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               R+ + +      +     I         I   L       +I   + +++      
Sbjct: 295 ETIQRIRDTLPTLQQALPSQIEIHTAVDRSKTIQASLREIERTLLIAVMLVIMVVFVFLR 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+ + +  T G     G   N  ++ A+    G+ V+D +VV + +    
Sbjct: 355 NGRATLIPAITVPISLIGTFGLMYASGFSLNNISLMALTIATGFVVDDTIVVLETI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +     +S          E     V  S++     +P+ + GG V      FA+ + + I
Sbjct: 412 RRIEEGLSPMQAAITGAKEVSFTVVSMSISLIAVFVPILLMGGIVGRLFHEFAMTLTYAI 471

Query: 806 VVAASSSIFIAAPILLFIYDWRA 828
           +++   S+     +  +    R 
Sbjct: 472 LISMLVSLTTTPMLCAWWLKSRQ 494


>gi|220924031|ref|YP_002499333.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
 gi|219948638|gb|ACL59030.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
          Length = 1039

 Score =  148 bits (373), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/546 (12%), Positives = 144/546 (26%), Gaps = 38/546 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L  L   L       +P+                         
Sbjct: 10  RPVATTLLMLAILLSGILSYLNLPLSALPAVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     L              + ITL F      +    +V   +   
Sbjct: 56  PEVMTSAVTAPLERQFGQLANLNQMTSQSSAGASVITLQFDLDLSLDIATQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +L+   +        E       +   +I        
Sbjct: 116 GNLLPSDLPAPPVYAKVNPADAPILT-LALTSKALALTEVRDLAETRLAQKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +   L         +       N +             +      
Sbjct: 175 VTMAGGQRPAVRVRFNSRALAAYGLNIDDLRTTIANLNVNTPKGTIDGPSQSFAINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D                         D                 ++ +       G  
Sbjct: 235 IRDPA--------------------TYRDAVIAYRNGAPVKLSAVADVVEGPENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   L+A                    S    
Sbjct: 275 MDTTPAVILNIQRQPGANVIAVVDRIKALLPQLQATLPAAIQVTPLTDRTVTIRASVHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      L+   S+ L+++  LA++ L   +L   S+  + +
Sbjct: 335 QMELLLAIALVVLVIFLFLRSLPATLIPSLSVPLSLVGALAVMDLWDFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  S   +   G +    TI    ++ L   + L F G 
Sbjct: 395 ATGFVVDDAIVVIENIARHVEEGASPLEAALKGSAEIGFTIISLTVSLLAVLIPLLFMGE 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+  +I+IS   ++++V  +   ++R++  ++     ++R         
Sbjct: 455 VVGRLFHEFAITLAATIVISGIVSLTLVPMLCARLLRHEPARARQAGLIARAGRWTMEAG 514

Query: 540 IQFMRA 545
           I+    
Sbjct: 515 IRLYGR 520



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 55/151 (36%), Gaps = 6/151 (3%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L    ++ L +   L    L+    +  ++ A+    G+ V+D +VV + +
Sbjct: 351 LFLRSLPATLIPSLSVPLSLVGALAVMDLWDFSLDNLSLMALTIATGFVVDDAIVVIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   K   E     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARHVEEGASPLEAALKGSAEIGFTIISLTVSLLAVLIPLLFMGEVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           A  IV++   S+ +   +   +       AR
Sbjct: 468 AATIVISGIVSLTLVPMLCARLLRHEPARAR 498


>gi|288803038|ref|ZP_06408474.1| HAE1 efflux family protein [Prevotella melaninogenica D18]
 gi|288334555|gb|EFC72994.1| HAE1 efflux family protein [Prevotella melaninogenica D18]
          Length = 1062

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/670 (11%), Positives = 192/670 (28%), Gaps = 42/670 (6%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
            L    ++++P+  P   IS+    +G        D    +N  +    + + + ++   
Sbjct: 3   GLISLPIEQYPNIAPPT-ISISTFYQG-------ADAQTVLNSVITPLEESI-NGVENMT 53

Query: 86  IGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
               +        IT+ F         A  V   +    + L  +  +  +  +  +  +
Sbjct: 54  YMESTATNAGMAMITVYFKQGADPNMAAVNVQNRVSQAQALLPAEVTRVGVTVSKRQSSN 113

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +V+     D         +       +  +                  +     P +++Q
Sbjct: 114 VVMYSLTTDDGRYDDEFLTNYNNINIVPMLKRINGVGDVQTPGMKTYSMRIWLYPDKMKQ 173

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
                + +S      N       FG +    +   +Y +  K  +               
Sbjct: 174 HKLVPSDVSMALAEQNIEAAPGSFGEQ---SNQKFEYTMRYKGRL-------------KT 217

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    I       +         +              +      + +  A  +    
Sbjct: 218 PEEYGNIIISSNTNGQTVHLRDVAKVELGGLQYSVMMKNNSRPAVIGMVNQVAGSNATQI 277

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            +      A  +    P     +E+        S      T  I   LV  V+++ +   
Sbjct: 278 ADDVKTALADAQKQMPPGMKVTIEQDVTEFLFASIEEVVFTLFITLLLVFFVVYIFLQDI 337

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   ++ + +I T   L + G ++ L +++ ++L I + VD  I+V E +  +   
Sbjct: 338 RSTLIPMIAVPVALIGTFFFLWVFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLDL 397

Query: 445 NQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISM 500
              S   +     +     I    +      V + F GG +    R F +TM +SI+IS 
Sbjct: 398 GYKSAMTAAIDAMNEISGAIISITLVMSAVFVPVSFIGGTSGTFYREFGVTMAVSIIISA 457

Query: 501 FTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLIPDCIAIQ---------FMRARFW 548
             A+++  A+           + K +                I           +  R+ 
Sbjct: 458 LNALTLSPALCAIFLKPHSKDEHKKLSRVDRFHMAFNTQYDKINTKYQKIVEKIINHRWI 517

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                +L  +  +  +         +   G    +++  P    V    +       ++ 
Sbjct: 518 SSLTVVLGIVALVVTMNFTKTGLVPNEDMGTLFAMISLPPGTSQVETQKVTDQIDKMLAS 577

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
             +   +  +V   +  G    Q+  +  +K        +     +   G  I+   I  
Sbjct: 578 NPYIERREQIVGYNFIAGQGSNQSTFIIKLKPFAEREYGMIDRIKSVFDGAGIAGLFIDP 637

Query: 669 GIVGVIISAI 678
               +I+  I
Sbjct: 638 TSSNMILGMI 647



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/297 (10%), Positives = 84/297 (28%), Gaps = 15/297 (5%)

Query: 543  MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                      +         ++    +   +   G   + V     +        L+ + 
Sbjct: 746  QGYYGGMYASNFNSYGKLFRVMIQGTVESRMSESGLTNIYVRTAGGMAPVSEFCTLKRVY 805

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                  +        +         S    +  E V K++                 + S
Sbjct: 806  GPSNITRFNLFTSISISATPADGYSSGQAIQAAEEVAKQVLPQGYGYEFSGLTRSEQESS 865

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
                      +I     + +Y+ +      +   L  I ++ + ++    F  +FG   +
Sbjct: 866  NS------TAMIFVLCIVFVYLILSAQYESYILPLAVILSIPIGLSGAFIFTLIFGHNND 919

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            +    +++ LIG    + +++ +   +      T ++ +          L   + TS+A 
Sbjct: 920  IYMQISLIMLIGLLAKNAILIVEFALE---RRRTGMAIKYAAILGAGARLRPILMTSLAM 976

Query: 780  FISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             I +LP+    G               G+++     +F+   +  F    + +   +
Sbjct: 977  IIGLLPLMFASGVGRNGNQTLGAAAVGGMLIGTLCQVFVVPALFAFFQYLQERVKPL 1033



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 54/439 (12%), Positives = 142/439 (32%), Gaps = 17/439 (3%)

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD-MGFSRAYSTI 463
           ++ + +T T   +A I +      D N+          +   S   +L     +R   T+
Sbjct: 52  MTYMESTATNAGMAMITVYFKQGADPNMAAVNV-----QNRVSQAQALLPAEVTRVGVTV 106

Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
                + ++   +    G            ++I+  +     +       +  Y     +
Sbjct: 107 SKRQSSNVVMYSLTTDDGRYDDEFLTNYNNINIVPMLKRINGVGDVQTPGMKTYSMRIWL 166

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             + + +  L+P  +++            S                      +    + +
Sbjct: 167 YPDKMKQHKLVPSDVSMALAEQNIEAAPGSFGEQSNQKFEYTMRYKGRLKTPEEYGNIII 226

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            +N       +R   +    G              V            T++ + VK  + 
Sbjct: 227 SSNTNGQTVHLRDVAKVELGGLQYSVMMKNNSRPAVIGMVNQVAGSNATQIADDVKTALA 286

Query: 644 EIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
           +            +   ++  L   I + +  + I+ + +   ++I        L  +  
Sbjct: 287 DAQKQMPPGMKVTIEQDVTEFLFASIEEVVFTLFITLLLVFFVVYIFLQDIRSTLIPMIA 346

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T  F  +FG   NL  ++A+L  I   V+D +VV + +   + L     S   
Sbjct: 347 VPVALIGTFFFLWVFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLDLGYK--SAMT 404

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
               ++NE  G  +  ++      +P++  GG+       F + MA  I+++A +++ ++
Sbjct: 405 AAIDAMNEISGAIISITLVMSAVFVPVSFIGGTSGTFYREFGVTMAVSIIISALNALTLS 464

Query: 817 APILLFIYD--WRAKNARI 833
             +         + ++ ++
Sbjct: 465 PALCAIFLKPHSKDEHKKL 483


>gi|295130720|ref|YP_003581383.1| export membrane protein SecD [Propionibacterium acnes SK137]
 gi|291376047|gb|ADD99901.1| export membrane protein SecD [Propionibacterium acnes SK137]
          Length = 552

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 118/540 (21%), Positives = 208/540 (38%), Gaps = 55/540 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +LVI+  M   +G++                +  P     LGLDLRGG+ + L    +D
Sbjct: 2   IFLVIIIVMYVLMGVM---------------RTWSP----KLGLDLRGGTSVTLTAKTED 42

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRF---KENIADKVTL 117
                   L+     +   +   G+G  S++ + ++ I +S  +       E +     L
Sbjct: 43  GKAPSATSLEQARLIIGQRVNALGVGESSVKTMGDRNIVVSAPNVESSKLVEMVGQTAQL 102

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME--IIRQRIDQIG 175
             + V ++  V  K            S + +        +     +           Q  
Sbjct: 103 GFRMVYAEEPVSQKSPTPGKAKPSAPSALPTVEPSASASAAPDASASSKGGTTSSASQYN 162

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +               P  +D                       S            D
Sbjct: 163 EKDPQSAAKMVKAAEEWKPTPEDQKAFEDY------------KCAKSVDSPGDKPLVTCD 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            +     +   V I+G  +  A +         VV++ F+ +G   F + T     K   
Sbjct: 211 RERTMKYLLSPVAIAGTQVVSADSGIPQGQLSYVVNLKFNSIGTTSFSDATTYLCSKMSP 270

Query: 296 VVLDGRVLTAPVINQAIPSGK-----------AQISGNFTIETAGILAAMLRAGSLPIKL 344
                 VL   VI+    +G            AQISG+FT  +A  LA +L+ G+LP+  
Sbjct: 271 QNQFAVVLDGKVISSPQLNGNTGTSCPINGGEAQISGHFTQNSAADLANVLKYGALPLSF 330

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
           +I    N+   LG + +  G  A + GL+L+  + ++ Y   GLV   S+ +  I T A 
Sbjct: 331 DISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYRGLGLVTLGSLVIAGITTYAA 390

Query: 405 LSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
           + LL    G TL+L  IAG ++ IG+  DS I+  ERIR+E R+ +++  +L  G+++A 
Sbjct: 391 MVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIREGRTLRTALQTGWAKAR 450

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            TI  ++  +L++ +VLF      V+GFA T+GL+ +I +         ++  + R +  
Sbjct: 451 GTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVLGRTRFW 510



 Score = 95.1 bits (234), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I + + + P +  E +R GI+  II  I +  Y  + ++    L  + +L++    T
Sbjct: 329 SFDISSVDNISPTLGGEQLRAGIIAGIIGLILVGGYCLLYYR-GLGLVTLGSLVIAGITT 387

Query: 708 LGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L G       +L  +A  +  IG + +  +V ++R+R  ++      + R  +  
Sbjct: 388 YAAMVLLGEAVGFTLSLAGIAGAIVAIGVTADSFIVYFERIRDEIRE---GRTLRTALQT 444

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  G  +     + +S + + V     +  FA  +    V+      F   PI+  +
Sbjct: 445 GWAKARGTILMADGVSLLSAIVLFVLSVDQVKGFAFTLGLTTVIDLIICFFFTHPIVTVL 504

Query: 824 YDWR 827
              R
Sbjct: 505 GRTR 508


>gi|237709776|ref|ZP_04540257.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237725073|ref|ZP_04555554.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265754407|ref|ZP_06089596.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229436339|gb|EEO46416.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456412|gb|EEO62133.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263235116|gb|EEZ20671.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1056

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 70/617 (11%), Positives = 169/617 (27%), Gaps = 50/617 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +              +  
Sbjct: 9   KKPIMTSLCFLAVAIFGLFS-----LSKLPVDLYPDIDTNTIM---------VMTSYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNSVSNLKHITSKSSENISVITLEFEYGYDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  +    ++   +   I I+L     ++      +         ++ +       
Sbjct: 115 VSSQLPDEVNTPIIFKFSTDMIPILLLSVQAEESQPALYKILD---DNVVNPLARVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     ++    DP++L     T   +S      N +  G  F V     S   + 
Sbjct: 172 TVSIAGAPKREVNIYCDPNKLEAYDLTIETISSIVGAENKNTPGGTFDVGSNTYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E+                     +I          +      +   +       
Sbjct: 232 EFKDPKEME--------------------NIVVGTRNGASVYLRDVATVVDSVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     +        L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVNISQKVMDQLPKLQKSLPSDVKLGVIVNTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420
              T       V++V+F+ +   +  ++   +I +++I +   L++    +L + S++ +
Sbjct: 332 LTETIMYAILFVVLVVFVFLGRWRATVIICITIPMSLIASFIYLAITDGGSLNIISLSCL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD  I+V E +     +      +   G +    ++  S +T +     L   
Sbjct: 392 SIAIGNVVDDAIVVLENVTTHIERGSEPKQAAIHGTNEVAISVIASTLTMIAVFFPLTMV 451

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI---------IRYKKMKSIDINPL 528
            G +    R     M + + IS  +A+S    M   +               K I+    
Sbjct: 452 SGMSGVLFRQLGWMMCVIMTISTISALSFTPMMCAQMLRLQKKQSKCFVTFYKPIERALD 511

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +       R    G    F +  IC        +       I + +     
Sbjct: 512 GLDNWYQKRLNWAVRHRRTIIAGCFGFFLLSLICAKGIGTEFFPSQDNSRISVQLQLPIG 571

Query: 589 VDLSVVRSNLESLQIGD 605
             +   ++  + L    
Sbjct: 572 ARVERAQALAQELTEKW 588



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 80/241 (33%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++ ++            ++  +V +      +   + V+          +P        
Sbjct: 794  KDIGTVVERSAPPTIERKDRERIVTVSAVISGAPLGSVVVAGESIIDKMDLPSGISIQVA 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + V+I  I + I +  +F+   +    + ++    +  L      
Sbjct: 854  GSYEDQQDSFSDLGTLAVLI-IILVFIVMAAQFESLTYPFIIMFSIPFAFSGVLMALYGT 912

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ ++   + LIG  V + +V+ D +          +S    +  S    L   + 
Sbjct: 913  GTTLNVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGMSVIHSVVVSGRSRLRPVLM 969

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++   + ++PMA+ GG    +     + +  G+ V+   ++ +   +         K  
Sbjct: 970  TTLTTILGMVPMAIGGGEGSEMWQPLGVSVIGGLTVSTVLTLILVPVLYCSFAGTGIKRN 1029

Query: 832  R 832
            R
Sbjct: 1030 R 1030



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 54/148 (36%), Gaps = 7/148 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +W   +    T+ + +  +  + A+  G   N+ +++ +   IG  V+D +VV + +   
Sbjct: 353 RWRATVIICITIPMSLIASFIYLAITDGGSLNIISLSCLSIAIGNVVDDAIVVLENV--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFG 804
                     +       NE     + +++       P+  V G  G +       M   
Sbjct: 410 TTHIERGSEPKQAAIHGTNEVAISVIASTLTMIAVFFPLTMVSGMSGVLFRQLGWMMCVI 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + ++  S++     +   +   + K ++
Sbjct: 470 MTISTISALSFTPMMCAQMLRLQKKQSK 497


>gi|326802255|ref|YP_004320074.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
 gi|326553019|gb|ADZ81404.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
          Length = 1065

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/524 (12%), Positives = 139/524 (26%), Gaps = 45/524 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  ++  +G++  +     +  + +FP   P               + +   
Sbjct: 7   QRPVVATVVSIILVILGIVGLI-----KLPVQQFPDIAPPA-------------VQVSAS 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEGIGVFSMRQ----IQNKITLSFADSRFKENIADKVT 116
                    L+  +  L   +       +            IT+ F      +  A  V 
Sbjct: 49  YPGANAETLLRSVAPPLEEAINGVENMSYMSSSSNNDGTLSITIYFKLGTDPDQAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIG 175
             +      L  +  +  + T   +   I+      +          +         +I 
Sbjct: 109 NRVASATGLLPAEVVQAGITTQKVQNAIIMGINLYSEDPELYDYTFLANYAAINIQPEIK 168

Query: 176 ISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                 Q           +    +P+++     T  ++       N       FG    +
Sbjct: 169 RIPGVGQANLFGGSKDYSMRIWLNPAQMASYNITPNEVMAAVRSKNQEAAPGRFGEMSKQ 228

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             +                          +       I                 +    
Sbjct: 229 SFEYVIKYAGK----------------YNRPEDYARMIIRSNADGSFLRLRDVAKVELDS 272

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   +        I       +          L               +      A
Sbjct: 273 YTYGSFNKVDDKPGVSIIMLQLPGSNSREIQLAIEELMVKAAKDFPEGIKYQILYNTKDA 332

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S    K T      LV IV+F+ +   +  L+   ++ + +I T   +SLLG ++ L
Sbjct: 333 LDQSIGQVKHTLIEAFILVFIVVFLFLQDFRSTLIPAIAVPVALIGTFFFMSLLGFSINL 392

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++  +VL IG+ VD  I+V E I  +   +  +   +           I    +     
Sbjct: 393 LTLFALVLAIGIVVDDAIVVVEAIHAKLEHSTMNAKQATLSAMHEITGAIISITLVMAAV 452

Query: 474 TVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            V + F     G   R FA+T+ ++I+IS   A+++  A+    
Sbjct: 453 FVPVAFMEGSAGVFYRQFALTLAIAIVISAINALTLSPALAALF 496



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/237 (16%), Positives = 90/237 (37%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              +  D     ++ LQ    +S      +E +  K  +  P     
Sbjct: 264 DVAKVELDSYTYGSFNKVDDKPGVSIIMLQLPGSNSREIQLAIEELMVKAAKDFPEGIKY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                      + I +    +I + I + I +++    +   L     + + +  T  F 
Sbjct: 324 QILYNTKDALDQSIGQVKHTLIEAFILVFIVVFLFLQDFRSTLIPAIAVPVALIGTFFFM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  IG  V+D +VV + +    KL  ++++ +     +++E  G 
Sbjct: 384 SLLGFSINLLTLFALVLAIGIVVDDAIVVVEAIH--AKLEHSTMNAKQATLSAMHEITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  ++      +P+A   GS       FA+ +A  IV++A +++ ++  +      
Sbjct: 442 IISITLVMAAVFVPVAFMEGSAGVFYRQFALTLAIAIVISAINALTLSPALAALFLK 498



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 86/253 (33%), Gaps = 12/253 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A + V ++ + +         I+  N           +       A   V E+  + + 
Sbjct: 797  KAGQMVPINTLLTLKRVFGPETITRYNLYNSIGINAIPKPGFSSGDAINAVREVAIQYLP 856

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
                      T+            + +   ++S + +   +  ++  +      I ++  
Sbjct: 857  NGYAYEFSGMTKEEIASGG-----QAVFVFLLSLLFVYFLLAAQYNSYILPFAIILSIPT 911

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             +        L GIE N+    A++ LIG    + +++ +     ++      S  D   
Sbjct: 912  GLIGVFTAIGLTGIENNIYVQVALIMLIGLLAKNAILIVEFA---VQRRQAGYSLVDAAV 968

Query: 763  KSINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + TS+A  + + PM    G S I   S +I  A G++      +FI   +
Sbjct: 969  EAAKLRLRPIIMTSIAFVVGITPMMRATGPSAIGNHSISIGAAGGMLSGVLLGLFIIPVL 1028

Query: 820  LLFIYDWRAKNAR 832
             +     + K ++
Sbjct: 1029 FVVFQALQEKISK 1041


>gi|163840739|ref|YP_001625144.1| preprotein translocase subunit SecD [Renibacterium salmoninarum
           ATCC 33209]
 gi|162954215|gb|ABY23730.1| protein-export membrane protein [Renibacterium salmoninarum ATCC
           33209]
          Length = 607

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 104/522 (19%), Positives = 187/522 (35%), Gaps = 36/522 (6%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FVNG 68
            ++    L + +   L    L    S  P     L LDL GG+ ++L    D      + 
Sbjct: 31  VILWLGALTVVMALLLTGGSLWWGASWAP----KLALDLEGGTQMILAPKVDGGASINDD 86

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            L      +R  +   G+    +    + + ++       E   D +          +  
Sbjct: 87  QLNQAISIIRQRVDNTGVSEAQISTSGSNVVVALPGEVKPET-RDLIKASANMNFRSVIA 145

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                            +          S        +      +               
Sbjct: 146 AAPGTPTAPDKLTPEDQLPKPTAAPTNGSDQ----NWVDAALYKEFESYSCVTPIT---- 197

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
              +   +QDP++                    +   ++ G   +   +        +  
Sbjct: 198 ---EPDPQQDPAK------------PSVACDPGTGYKYILGPVEVAGKEITDASYGLQQG 242

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
             G   N    N                     F+   + +     A+VLDG++++AP  
Sbjct: 243 AQGTTTNKWAVNLAFNQDGAT-KFKEVTTRLNGFYLANQQDPKAQFAIVLDGKIVSAPSS 301

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I  GK+QI+GNFT  +A  L+  L+ G+LPI  +I  E  + A LG+  +  G  A 
Sbjct: 302 QAVITDGKSQITGNFTETSAKSLSDKLKFGALPISFDIQSEEQISATLGTQQLEMGLLAG 361

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT----LPSIAGIVLGI 424
           + GL L+V++ +  Y   G V   S+ +  +LT   +++LG +      L  +AG+++ I
Sbjct: 362 LIGLALVVVYSLFQYRALGFVTVASLVVAGVLTYLAIAVLGWSQNYRLSLAGVAGLIVAI 421

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G   DS I+  ERIR+E R+ + +  +++ G+ RA  T+  S    L+A VVL+F   G 
Sbjct: 422 GQTADSFIVYFERIRDELREGRGLVAAVENGWKRAKRTVLASKAVNLLAAVVLYFVAVGN 481

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           VRGFA T+GL+ +  +          +  +   K        
Sbjct: 482 VRGFAFTLGLTAIADLIVVFMFTHPTLQLLATRKFFSEGHRF 523



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 86/258 (33%), Gaps = 11/258 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               ++    N     +      +   + D    +    +  +   + Q   +  +T   
Sbjct: 263 TKFKEVTTRLNGFYLANQQDPKAQFAIVLDGKIVSAPSSQAVITDGKSQITGNFTETSAK 322

Query: 636 EMVKKKITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
            +  K     +P    IQ+ E +   +  + +  G++  +I    +++Y   +++     
Sbjct: 323 SLSDKLKFGALPISFDIQSEEQISATLGTQQLEMGLLAGLIGLALVVVYSLFQYR-ALGF 381

Query: 695 GAITTLILDITKTLGFFALFGIE----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             + +L++    T    A+ G       +L  VA ++  IG + +  +V ++R+R  ++ 
Sbjct: 382 VTVASLVVAGVLTYLAIAVLGWSQNYRLSLAGVAGLIVAIGQTADSFIVYFERIRDELRE 441

Query: 751 YTTSISFRDLIDKSINETLGRSVYTS-MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                     ++        R+V  S     ++ + +       +  FA  +    +   
Sbjct: 442 ---GRGLVAAVENGWKRA-KRTVLASKAVNLLAAVVLYFVAVGNVRGFAFTLGLTAIADL 497

Query: 810 SSSIFIAAPILLFIYDWR 827
                   P L  +   +
Sbjct: 498 IVVFMFTHPTLQLLATRK 515


>gi|120603541|ref|YP_967941.1| acriflavin resistance protein [Desulfovibrio vulgaris DP4]
 gi|120563770|gb|ABM29514.1| acriflavin resistance protein [Desulfovibrio vulgaris DP4]
          Length = 1041

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 66/584 (11%), Positives = 163/584 (27%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +   G++        Q  +   P+                    L   
Sbjct: 9   RRPVTTTLVMLGLLFFGVM-----GYRQLPVSDLPNVDFPTIQ---------VRAQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + +   +    +   + +        +  Q   +IT+ F  SR  +  A  V   +  
Sbjct: 55  DPETMASSVAAPLERQFATIAGIDSMSSTNTQGNTRITIQFNLSRDIDAAAQDVQAAIST 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  D                +L    +        + +     +    I +     
Sbjct: 115 AQRKLPSDLTTPPSYQKVNPADQPILF-LALTSPTLPLSKVNEYAETRIGQTISMVSGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  + DP RL+ L     ++S      N++                   
Sbjct: 174 QVNVYGAKKYAVRVQVDPRRLKALGLGIDEVSAAVDKANSNLPTGTLQGEHTASIIKASG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +                 +   +       
Sbjct: 234 QL--------------------YDAAAYRPVVVAYRNGAPVRLEELGRVVDSVEQDRILN 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    +E+   L               +      +   S + 
Sbjct: 274 WFNDERGIVLAVQRQPGTNTVEVVESIKRLLPEFERQLPAAVKLNILFDRSESIKASVAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV++V+F+ +      ++   ++ ++V++T A + ++G +L   S+  + 
Sbjct: 334 VKFTLVLTVCLVVLVIFLFLRSLSATVIPSLALPMSVVVTFAAMHMMGFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E I       ++   +   G      TI    ++     + + F G
Sbjct: 394 LAVGFVVDDAIVMLENIVRHMEMGKTPLRAALDGAREIGFTIISMTVSLAAVFIPVLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+ + ++IL+S F ++S+   +    ++    +       +      + +
Sbjct: 454 GIVGRLFHEFAVVITVAILLSGFVSLSLTPMLCALFLKPHVGQKRHGRVYNALETFFETL 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              + R+  + +    +    S+ +L      +    KG +   
Sbjct: 514 HRGYERSLRFTMRHHRMTFGLSMVVLGVTVWLFAAMPKGFLPSE 557



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 54/155 (34%), Gaps = 9/155 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +     L + +  T     + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 351 LFLRSLSATVIPSLALPMSVVVTFAAMHMMGFSLDNLSLMALTLAVGFVVDDAIVMLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      +          E     +  +++     +P+   GG V      FA+ +
Sbjct: 411 ---VRHMEMGKTPLRAALDGAREIGFTIISMTVSLAAVFIPVLFMGGIVGRLFHEFAVVI 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYD---WRAKNARI 833
              I+++   S+ +   +          + ++ R+
Sbjct: 468 TVAILLSGFVSLSLTPMLCALFLKPHVGQKRHGRV 502



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 85/250 (34%), Gaps = 15/250 (6%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V L  + +   S+    ++             L+     S A   V  +  + +      
Sbjct: 782  VPLDTIATLRPSVGPLAVNHSGQFPSVTLSFNLRPGVSLSEAVQAVEGIAGQYLPPTATG 841

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDIT 705
            +     +     +           +++    ++IYI +      +   L  ++ L     
Sbjct: 842  TFQGTAQAFQSSMQGM-------AMLLFMAVVVIYIVLGVLYESFIHPLTILSGLPSAGL 894

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L    +FGI+ NL A   ++ LIG    + +++ D   +         S  + I +  
Sbjct: 895  GALVTLFIFGIDLNLYAFVGIIMLIGIVKKNAIMMIDFAVE--AERKNGASPYEAILQGC 952

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + T+MAA +  LP+AV    G        + +  G++V+   +++I      +
Sbjct: 953  LIRFRPIMMTTMAALMGTLPIAVGWGPGAEARQPLGLAVVGGLLVSQLLTLYITPVYYTY 1012

Query: 823  IYDWRAKNAR 832
            +     +  R
Sbjct: 1013 LDALSRRIKR 1022


>gi|66044379|ref|YP_234220.1| acriflavin resistance protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63255086|gb|AAY36182.1| Acriflavin resistance protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 1034

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/500 (13%), Positives = 141/500 (28%), Gaps = 37/500 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPIAPLPEAEFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       +TL F  ++  +  A +V   +     +L  D              S
Sbjct: 82  TQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADLPSLPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL  +    +I    E S         Q+   E   Q   + +    +  +  P +L  
Sbjct: 142 PVLILSVSSSLIPG-TELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L  T A +                              +          ++  ++N    
Sbjct: 201 LGLTLADIRLAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                         +   +   T
Sbjct: 241 KPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V          S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRIQRELPRLQEMLPASVDVSVLNDRTRTIRASLHEVEMTLMIAVLLVVAVMALFLRQL 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            Q +  +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GQDMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMK 521
            ++++   +    +R     
Sbjct: 481 VSLTLAPTLAALFMRAPTHH 500



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPASVDVSVLNDRTRTIRASLHEVEMTLMIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQDMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 79/202 (39%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   ++I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVRMLDQAKNEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  V+ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGVVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               ++ ++ I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLTPQEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGSELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     + 
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHRR 1021


>gi|33862889|ref|NP_894449.1| preprotein translocase subunit SecF [Prochlorococcus marinus str.
           MIT 9313]
 gi|33634805|emb|CAE20791.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9313]
          Length = 359

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 104/178 (58%), Gaps = 5/178 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           Q+ + +GP +  +L+R  ++ ++++   + IYI +R+   +AL A+  L  D+    G F
Sbjct: 148 QSVDTIGPSLGGQLLRSSLISLLVAFTGIAIYISLRYDRRYALLALVALAHDVIIVCGIF 207

Query: 712 ALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           A  G+    E +     A+LT+ GYSVND VVV+DR+R+  +    S+   + +D++++ 
Sbjct: 208 AWLGLLITLEVDSLFAVALLTIAGYSVNDTVVVFDRIRERSRE-DNSLPLTEQVDRAVSA 266

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           TL R++YTS    + +L + ++GG+ +  FA+ +A G+VV + SSI +A  +L     
Sbjct: 267 TLTRTLYTSGTTLLPLLALILFGGATLYWFAVALALGVVVGSWSSIALAPSLLSLWQG 324


>gi|153820309|ref|ZP_01972976.1| multidrug resistance protein, putative [Vibrio cholerae NCTC 8457]
 gi|126509147|gb|EAZ71741.1| multidrug resistance protein, putative [Vibrio cholerae NCTC 8457]
          Length = 1007

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 72/597 (12%), Positives = 174/597 (29%), Gaps = 42/597 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAIF-----KMQVREYPEMTNTVIT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      +++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNELASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  + A +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++                      +                 +    +      
Sbjct: 233 QVSTVEDLE--------------------SLVVKAEKGTVTRLGDIAKVTLAKSHDTYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 273 SANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLIP 535
              G   + FA+T+  S+ +S   A+++   M   +           + ++ L       
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTAR 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               +  + A    V         S+ +LF    +     +    + ++   P + +
Sbjct: 513 YERMLTAVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNAN 569



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 83/244 (34%), Gaps = 7/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +     +             E            + +   + +  +  ++ + +P +   
Sbjct: 257 DIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEM 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N          E I + I  ++ +A+ +L+ I +        L  I T+ L +       
Sbjct: 317 NVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G  +NL  + A++  IG  V+D +VV + +    +      S          E    
Sbjct: 377 QMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGTREIAIP 433

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   +     
Sbjct: 434 VIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANE 493

Query: 829 KNAR 832
              +
Sbjct: 494 APNK 497



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 79/788 (10%), Positives = 210/788 (26%), Gaps = 36/788 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                     ++L S +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 229  SADTQVSTVEDLESLV--VKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 286

Query: 126  LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                   N+     E    +   + S   ++ +    +  +    E+I+  ++   I   
Sbjct: 287  APSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLV 346

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 347  VITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 404

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 D+    G     A      +   PV+ ++           +     G        
Sbjct: 405  VLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL 464

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                +  V      +    +               L+   L  ++    ER + A +   
Sbjct: 465  TLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHR 524

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
             +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 525  PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKIL 584

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                 +            N+     +    S   +     +    T+        +    
Sbjct: 585  SDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTA-- 642

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             F        G  + +   I            A  +          +  +    F     
Sbjct: 643  -FQMPELPGAGSGLPIQFVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATM 701

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
             I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 702  KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 761

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
            S       G +         + +   +  P  +   +  +  V    T +          
Sbjct: 762  SYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENL 821

Query: 652  --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 822  ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   A      N+ +   ++TL+G      +++ +  ++        +S  + +
Sbjct: 882  LAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIEAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
              +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 940  MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 999

Query: 819  ILLFIYDW 826
            I  ++ + 
Sbjct: 1000 IYSYLAEK 1007


>gi|312973676|ref|ZP_07787848.1| multidrug resistance mdtC domain protein [Escherichia coli 1827-70]
 gi|310332271|gb|EFP99506.1| multidrug resistance mdtC domain protein [Escherichia coli 1827-70]
          Length = 518

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/535 (12%), Positives = 146/535 (27%), Gaps = 38/535 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAVSNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   S+ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K +           L+
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLV 509



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +    ++ + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVSVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|167624803|ref|YP_001675097.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
 gi|167354825|gb|ABZ77438.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
          Length = 1034

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 85/637 (13%), Positives = 187/637 (29%), Gaps = 55/637 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                  L  ++  +GL     N +    + ++P                 ++ V+ V  
Sbjct: 10  RPVMAASLSILLFILGL-----NAMKDLQVRQYPEM---------------TNTVITVTT 49

Query: 63  D------DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                  + + GF+    ++  S +        S +   + I L+   +   E     V 
Sbjct: 50  PYPGADAELIEGFITQPLEQALSQVDNLDFMTSSSQLGTSTIILNMRLNTNPEEALANVL 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V ++L  +     + ++T    SI+       ++   + +    + R    Q+  
Sbjct: 110 SQINSVTNQLPKEAYNPSVTSSTGATTSIMYISFFSKEL--DSSQIVDYLERVVNPQLST 167

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           L    +P +L Q   TTA +       N       F        
Sbjct: 168 VNGVSNIQMMGGTPFALRIWPNPVKLGQYNLTTADLITVLQQNNYQSAVGQFNSSLT--- 224

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                            +   T N    T   +  +       +        +I    + 
Sbjct: 225 -----------------ILNGTINTQVDTVDGLKKLVIKSDSGQVVQLQDVADISLGKSS 267

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +           +     +     E       ++         + +   +  A  
Sbjct: 268 DSTRALANGREAVIIGINATPTANPLDVAEGIRTKFDLVEKNLPTTIQSTLIYDSTLAIT 327

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T A  A +V++V+ + +   +  ++   +I L++I  +A++ + G +L L +
Sbjct: 328 DSIDEVVKTIAEAAVIVIVVILLFLGSFRAVIIPIITIPLSLIGVIAVMQVFGFSLNLMT 387

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  +VL IGL VD  I+V E +    +       +  +        I    IT       
Sbjct: 388 LLAMVLAIGLVVDDAIVVVENVDRHIKMGTKPLEAALVATREIAVPIISMTITLAAVYAP 447

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR--- 530
           +   G   G   + FA+T+  S++IS F A+++   M   +++     S     + R   
Sbjct: 448 IALMGGVTGSLFKEFALTLAGSVVISGFVALTLSPMMCSKMLKPHAQPSKFEETVERVLG 507

Query: 531 -FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                     +  +  R   V  +++  +    +          D   G+ + +      
Sbjct: 508 GLTSRYHKTLLAVLDHRGAMVFFAVIVFVSLPIIFSFIPSQLAPDEDQGVVVVIGTTPST 567

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +        L    IS Q        L+ +     
Sbjct: 568 SNNDYIQANMELITQIISKQPQVEASLALIGVPTSSQ 604



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 59/146 (40%), Gaps = 6/146 (4%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + I +++ +     +   +  I T+ L +   +    +FG   NL  + A++  IG  V
Sbjct: 340 AAVIVIVVILLFLGSFRAVIIPIITIPLSLIGVIAVMQVFGFSLNLMTLLAMVLAIGLVV 399

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +VV + +    +         +    +  E     +  ++       P+A+ GG   
Sbjct: 400 DDAIVVVENV---DRHIKMGTKPLEAALVATREIAVPIISMTITLAAVYAPIALMGGVTG 456

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAA 817
                FA+ +A  +V++   ++ ++ 
Sbjct: 457 SLFKEFALTLAGSVVISGFVALTLSP 482



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 59/152 (38%), Gaps = 10/152 (6%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIE----FNLTAVAAVLT 728
             ++   + + +  +F+     L  + T+ L I+  L       +      N+ +   ++T
Sbjct: 853  ALALAIIFLVLASQFESVRDPLVIMFTVPLAISGALIALGWTHVSGETSLNIYSQVGLIT 912

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G      +++ +  ++         +  D I ++    L   + T+ A    ++P+  
Sbjct: 913  LVGLITKHGILMCEVAKEE--QIFKGATKHDAIIEAATVRLRPILMTTSAMIAGLIPLLF 970

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
                G +   +  + +  G+ V  + ++F+  
Sbjct: 971  ASGAGAASRYNIGLVIVAGLAVGTAFTLFVLP 1002


>gi|258625849|ref|ZP_05720724.1| multidrug resistance protein, putative [Vibrio mimicus VM603]
 gi|258581813|gb|EEW06687.1| multidrug resistance protein, putative [Vibrio mimicus VM603]
          Length = 1036

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 82/655 (12%), Positives = 191/655 (29%), Gaps = 39/655 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAVF-----KMQVRGYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLVQGFITQPLEQAVAQADNIDYMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      + + S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSEDLASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  + + +       N           F+  +     
Sbjct: 173 SINLYGGMKYALRVWLDPAKMAALKMSASDVMSVLNANNYQSATGQAIGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+  + +     N         V ++      R         +           
Sbjct: 233 QVSTVEELENLVVKAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVV----------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 282 ---------AAINAAPSANPINIAKDVLEMLPELQKNMPSNIKMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA+T+  S+ +S   A+++   M   +++  +  +     +          
Sbjct: 453 GITGALFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKANETPNKFELKVHHLLDRMTAR 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
             + + A      + I F+      L         +       GV+       S    + 
Sbjct: 513 YERMLSAVMTHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVVMLMGTGPSNANLDY 572

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            +  + D++    D  +    ++     +S     +  MV     E         
Sbjct: 573 LANTMDDVNQILSDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQEEVTNR 627



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L  +     +             E            + +   + +  +  ++ + +
Sbjct: 251 NVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNM 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + I  ++ +A+ +L+ I +        L  I T+ L + 
Sbjct: 311 PSNIKMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  + G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   G++   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAIPVIAMTLTLGAVYAPIALMGGITGALFKEFALTLAGSVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +        +
Sbjct: 488 MLKANETPNK 497



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 79/791 (9%), Positives = 210/791 (26%), Gaps = 36/791 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                     +EL + +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 229  SADTQVSTVEELENLV--VKAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 286

Query: 126  LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                   N+     E    +   + S   ++ +    +  +    E+I+  ++   I   
Sbjct: 287  APSANPINIAKDVLEMLPELQKNMPSNIKMNVLYDSTVAINESIHEVIKTIVEAALIVLV 346

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 347  VITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 404

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 D+    G     A      +   PV+ ++           +     G        
Sbjct: 405  VLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGALFKEFAL 464

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                +  V      +    +               L+   L  ++    ER + A +   
Sbjct: 465  TLAGSVFVSGIIALTLSPMMCSKMLKANETPNKFELKVHHLLDRMTARYERMLSAVMTHR 524

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
             +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 525  PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVVMLMGTGPSNANLDYLANTMDDVNQIL 584

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                 +            N+     +    S   +     +    T+        +    
Sbjct: 585  SDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQEEVTNRVGTLVKEIPGMAVTA-- 642

Query: 477  LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             F        G  + +   I            A  I          +  +    F     
Sbjct: 643  -FQMPELPGAGSGLPIQFVITTPNSFESLFTIATDILTEVKSSPMFVYSDLDLNFDSATM 701

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
             I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 702  KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 761

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
            +       G +         + +   +  P  +   +  +  V    T +          
Sbjct: 762  NYYVRAADGKVIPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPSPGTAMGDAINWFENL 821

Query: 652  --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 822  ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L +   L   A      N+ +   ++TL+G      +++ +  ++        +S  D +
Sbjct: 882  LAVCGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
              +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 940  MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 999

Query: 819  ILLFIYDWRAK 829
            I  ++ +    
Sbjct: 1000 IYSYLAEKHKP 1010


>gi|161830273|ref|YP_001596895.1| RND efflux transporter [Coxiella burnetii RSA 331]
 gi|161762140|gb|ABX77782.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii RSA 331]
          Length = 1012

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 75/632 (11%), Positives = 170/632 (26%), Gaps = 44/632 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L  ++  +G++        +  L  FP                      +  
Sbjct: 9   RQPVLAIVLSLILVVLGVVA-----FQRLELRFFPKLELPILT---------VATTYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S +        +     + +T+ F      E  A  V   +  
Sbjct: 55  SAQLMESQVTTQIENALSGVDHIASISSTSYPGSSYVTVLFQLGGNFEEEASAVRDKVFA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  +     +   T+    +             + +    + R     +       
Sbjct: 115 IRDQLPPNANPPTITVGTKGNPVL---GIGFIDPQKSSADIRDYVERAVQPALRQLSGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    + S++     T   +       N               S  +  
Sbjct: 172 EVDILGASDYAMRIWLNASKMVAHQVTVTDVKNALTANNIYFPAGSIQEPKRNYSIVSHT 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D                          I  +  G                ++     
Sbjct: 232 QLKDATA-------------------FGNIIIKNNDGGTVRLNDIGHAELGYRSLYEAPM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      + +     + +            A ++    P     V          S   
Sbjct: 273 RINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASVNYDASTFLKSSIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV+ V+F+ +   +   +   +I +++I   A + L G T+   S+ GIV
Sbjct: 333 TFYAMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKLFGFTINTMSLLGIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I     +  + F +   G       I    +T +     + F  
Sbjct: 393 LAIGLVVDDAIVMLENIHRHIEEGMTPFQAAIKGSREISFAIIAMALTLVAVYAPVGFVQ 452

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-----IDINPLSRFFL 533
           G      + FA T+  +++IS F A+++   M   I+  +   S     ID         
Sbjct: 453 GFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKDSRLTIIIDRAFSQLTGF 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     + R +  G+  +  +  +  +         +  G IQ+ V +    +L+ 
Sbjct: 513 YQRFLKFALNKRRLFIAGLLAIAGVGYVLFISLPSELIPKEDIGLIQVSVTSPSGANLNY 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                E ++             + +       
Sbjct: 573 TNQYAEQVEKIIQQNPAVASVMSQVSTTSVNI 604



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 82/243 (33%), Gaps = 7/243 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + L    + +   +        L+    Q  + V     ++     I + +P     + 
Sbjct: 259 HAELGYRSLYEAPMRINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASV 318

Query: 655 EIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
                   +  I +    +     + + +          A   I T+ + +     F  L
Sbjct: 319 NYDASTFLKSSIEETFYAMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG   N  ++  ++  IG  V+D +V+ + +    +     ++      K   E     +
Sbjct: 379 FGFTINTMSLLGIVLAIGLVVDDAIVMLENIH---RHIEEGMTPFQAAIKGSREISFAII 435

Query: 774 YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++       P+     +   +   FA  +A  +V++A  ++ ++  +   I   R K+
Sbjct: 436 AMALTLVAVYAPVGFVQGFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKD 495

Query: 831 ARI 833
           +R+
Sbjct: 496 SRL 498



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 88/272 (32%), Gaps = 11/272 (4%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                    DF    +L V +N  +D +   S   S  I            +F        
Sbjct: 745  QMDKQDLTDFNALKKLYVHSNNKMDANKGNSIPVSSLIDLTPTVGQGSFTHFNRFRSGTI 804

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYI 684
               +A       V   I   VP     +        + + ++     + I  +  + IY+
Sbjct: 805  SARLAPGYSESQVIDYIKAHVPFVMTSDVHYAFSGKAAQFLQSSKSMIGIILMSLIFIYL 864

Query: 685  WIRFKWYFALGA-ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
             +  ++   L   +  L + +    G  +L   G   ++ +   ++TLIG      +++ 
Sbjct: 865  VLSAQFGSFLDPFVILLAVPLCIVGGLLSLKLTGGTLSIYSQIGLVTLIGMISKHGILIT 924

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFA 798
              +     L    ++ ++ I +     L   + T++A     LP+A+  G   I      
Sbjct: 925  QFIND---LRKQGMAMQEAILRGAMIRLRPVLMTTLAMVFGALPLALASGPGSIGRHQIG 981

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +  G++     S+ I  PI         K 
Sbjct: 982  WVIVGGLLFGTFFSL-IVVPIAYSYLGRFKKR 1012


>gi|116074649|ref|ZP_01471910.1| preprotein translocase subunit [Synechococcus sp. RS9916]
 gi|116067871|gb|EAU73624.1| preprotein translocase subunit [Synechococcus sp. RS9916]
          Length = 493

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 123/519 (23%), Positives = 224/519 (43%), Gaps = 55/519 (10%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----FV 66
           +++I  + +  AL  F+    +D            LGLDLRGGS L+LEV          
Sbjct: 8   FALILSLAITSALWLFVISPGVD------------LGLDLRGGSQLLLEVQPAGSITKIT 55

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
              L+     L   +   G+   +++    +++ L           A+K+          
Sbjct: 56  KTELESVKSVLDRRVNSLGVAESTLQTVGDDQLVLQLPGETDPSKAAEKLGKTALLEFRA 115

Query: 126 LNVDPKKN--LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                 +    L     +  SI+ ++         +I+       Q+   +  S  + Q 
Sbjct: 116 QKPGISEEMRGLQRLRSQVKSILAAKEARGDSDETSIDPEAFAEAQKALGLEGSAGSEQE 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                +        D        G    +         +++   + V    +S+G     
Sbjct: 176 QLEQVLAKADRQFADGFEPAAFNGK---LLTRAGTRGPTEQSPGWAVTLSFNSEGGDKFA 232

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           E    I+G               +  V   F   G                         
Sbjct: 233 ELTKSIAGTDRLLGIFLDGSPISEASVGSQFKVAG------------------------- 267

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   I  G A+I+G F+ E A  LA ++  G+LP+ + I++ R +G  LG++++ +
Sbjct: 268 --------ITGGNAEITGRFSAEEANDLAELINGGALPLPVEILQVRTIGPSLGAENVQR 319

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
              A ++GL L+ +FM+++Y   G VA  ++ L  +  L++ SL+G TLTLP IAG +L 
Sbjct: 320 SLVAALSGLALVTVFMVLIYRLAGAVAVVALALYALFNLSVYSLIGVTLTLPGIAGFILS 379

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           IG+AVD+N+L+ ERI++E R   ++  S++  FS+A+S+I D ++T LI+   LF  G G
Sbjct: 380 IGMAVDANVLIFERIKDELRSGNTLVRSIETAFSQAFSSIIDGHLTTLISCAALFTLGTG 439

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            V+GFA T+G+ +++S+FTA++  R ++ F++ Y+ ++ 
Sbjct: 440 LVKGFAATLGIGVVLSLFTALTCTRTLLRFLMGYQGLRR 478



 Score =  117 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 79/176 (44%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E +++ +V  +     + +++ + ++   A+  +   +      L  ++L G
Sbjct: 307 TIGPSLGAENVQRSLVAALSGLALVTVFMVLIYRLAGAVAVVALALY-ALFNLSVYSLIG 365

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R++  ++   +  +    I+ + ++     +  
Sbjct: 366 VTLTLPGIAGFILSIGMAVDANVLIFERIKDELR---SGNTLVRSIETAFSQAFSSIIDG 422

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS   +   G  ++  FA  +  G+V++  +++     +L F+  ++    
Sbjct: 423 HLTTLISCAALFTLGTGLVKGFAATLGIGVVLSLFTALTCTRTLLRFLMGYQGLRR 478


>gi|26990295|ref|NP_745720.1| acriflavin resistance protein [Pseudomonas putida KT2440]
 gi|24985247|gb|AAN69184.1|AE016552_6 RND efflux transporter, permease protein [Pseudomonas putida
           KT2440]
          Length = 1035

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 61/588 (10%), Positives = 165/588 (28%), Gaps = 43/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   I  +G +           +   P       +             L   
Sbjct: 9   RRPVATMLLSLAIMLLGGVS-----FGLLPVAPLPQMDFPVIV---------VSANLSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S  Q   ++ + F   R  +  A +V   +  
Sbjct: 55  SPEVMASTVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 TRNLLPSGMRSMPTYKKINPSQAPIMV-LSLTSDVLQKGQLYDLADTILSQSLAQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    +P  L Q   +  ++       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +   +             +   +    +  
Sbjct: 234 QLESAKD--------------------YEPVVIRQQNGTILRLSDVATVTDGVENRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +   +   T++        L++         V          +   
Sbjct: 274 FFNDQAAVLLVVNRQTGANIIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+++ +   +  L+   ++ ++++ T A++ + G +L   S+  ++
Sbjct: 334 AEHTLLIAVVLVILVVYLFLGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I       Q    +  +G      T+   N++ +   V + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
           G      + F+IT+  +I++S+  ++++   +    ++ ++     ++        R   
Sbjct: 454 GIVRNLFQEFSITLAAAIIVSLVVSLTLTPMLCARWLKPQQAEQTRLQRWSDTLHQRMVA 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             D      +R +   +   +     +I L              G  +
Sbjct: 514 AYDHSLGWALRHKRLTLLSLLATIGINIALYVVVPKTLMPQQDTGQLM 561



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 54/152 (35%), Gaps = 7/152 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                  +L     + + +  T     + G   N  ++ A++   G  V+D +VV + + 
Sbjct: 352 FLGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +                 E     +  +++     + +   GG V      F+I +A
Sbjct: 411 --SRHIENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLA 468

Query: 803 FGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
             I+V+   S+ +   +   ++   +A+  R+
Sbjct: 469 AAIIVSLVVSLTLTPMLCARWLKPQQAEQTRL 500



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 94/267 (35%), Gaps = 6/267 (2%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            N    +       V         V  S +   +    + +     +     + +   +  
Sbjct: 757  NPKYAWDPSTLEQVQVITADGARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGY 816

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +  + +  +++ + ++     +            +  +     ++ + + + + + I ++
Sbjct: 817  SPDQAMAALERAVAKLGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYE 876

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  ++TL       L    + G EF+L ++  +  LIG    + +++ D      
Sbjct: 877  SYIHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMID--LALQ 934

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                   S  + I ++    L   + T++AA +  LP+ +    G  +     + +  G+
Sbjct: 935  LERHQGFSPEESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGL 994

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            V +   +++    + L++   R +  R
Sbjct: 995  VFSQILTLYTTPVVYLYLDRLRHRFNR 1021


>gi|167033337|ref|YP_001668568.1| acriflavin resistance protein [Pseudomonas putida GB-1]
 gi|166859825|gb|ABY98232.1| acriflavin resistance protein [Pseudomonas putida GB-1]
          Length = 1035

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 63/588 (10%), Positives = 164/588 (27%), Gaps = 43/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   I  +G +           +   P       +             L   
Sbjct: 9   RRPVATMLLSLAIMLLGGVS-----FGLLPVAPLPQMDFPVIV---------VSANLSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S  Q   ++ + F   R  +  A +V   +  
Sbjct: 55  SPEVMASTVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFEMGRDIDGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 TRNLLPSGMRSMPTYKKINPSQAPIMV-LSLTSDVLQKGQLYDLADTILSQSLAQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    +P  L Q   +  ++       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +   +             I   +    +  
Sbjct: 234 QLESAKD--------------------YEPVVIRQQNGTILRLSDVATITDGVENRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +   +   T++        L++         V          +   
Sbjct: 274 FFNDQAAVLLVVNRQTGANIIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+++ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEHTLLIAVVLVILVVYLFLGSLRASLIPSLAVPVSLVGTFAVMYLCGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I       Q    +  +G      T+   N++ +   V + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIEDGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
           G      + F+IT+  +I++S+  ++++   +    ++  +     ++        R   
Sbjct: 454 GIVRNLFQEFSITLAAAIIVSLVVSLTLTPMLCARWLKPHQAEQTRLQRWSDKLHQRMVN 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             D      +R +   +   +     +I L              G  +
Sbjct: 514 AYDRSLGWAIRHKRLTLLSLLATIGINIALYVVVPKTLMPQQDTGQLM 561



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 7/152 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                  +L     + + +  T     L G   N  ++ A++   G  V+D +VV + + 
Sbjct: 352 FLGSLRASLIPSLAVPVSLVGTFAVMYLCGFSLNNLSLMALILATGLVVDDAIVVLENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +                 E     +  +++     + +   GG V      F+I +A
Sbjct: 411 --SRHIEDGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLA 468

Query: 803 FGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
             I+V+   S+ +   +   ++   +A+  R+
Sbjct: 469 AAIIVSLVVSLTLTPMLCARWLKPHQAEQTRL 500



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 95/267 (35%), Gaps = 6/267 (2%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            N    +       V         V  S +   +    + +     +     + +   +  
Sbjct: 757  NPKYAWDPSTLEQVQVITADGARVPLSTIARYENSLANDRVSHEGQFASEDIAFDVAEGY 816

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +  + +  +++ + ++     +            +  +     ++ + + + + + I ++
Sbjct: 817  SPDQAMAALERAVAKLGLPEEVIAKLGGTADAFAKTQQGQPFMILGALLLVYLVLGILYE 876

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  ++TL       L    + G EF+L ++  +  LIG    + +++ D      
Sbjct: 877  SYIHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMID--LALQ 934

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S  + I ++    L   + T++AA +  LP+ +    G  +     + +  G+
Sbjct: 935  LERHQGLSPEESIRRACLLRLRPILMTTLAAILGALPLLLSHAEGAEMRQPLGLTIIGGL 994

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            V +   +++    + L++   R +  R
Sbjct: 995  VFSQILTLYTTPVVYLYLDRLRHRFNR 1021


>gi|238019223|ref|ZP_04599649.1| hypothetical protein VEIDISOL_01087 [Veillonella dispar ATCC 17748]
 gi|237863922|gb|EEP65212.1| hypothetical protein VEIDISOL_01087 [Veillonella dispar ATCC 17748]
          Length = 1060

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 80/667 (11%), Positives = 181/667 (27%), Gaps = 34/667 (5%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +GL+  +        + R+P   P              +          VN  +    
Sbjct: 20  TLVGLISMM-----NLPIARYPQISPPTV---------SVNTAYTGATAQVVNDTVASVI 65

Query: 75  DELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           +     ++       S     +  +T+ F      +         +Q   ++L  + +  
Sbjct: 66  ETQIVGVQDMDYMTSSSSSNGSYSLTVQFNQGTDADMDTVNTQNRVQAALAQLPAEVQAV 125

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            + TT       ++   N       +           +D I   +              +
Sbjct: 126 GVTTTKSSGDMAMVFSLNSPDGTYDSTFLKNYGTNYMMDAIKSIKGVGSVREFGS-DYAM 184

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP++++ L  T ++++      N        G          QY ++ +  +    
Sbjct: 185 RIWLDPAKMQNLGVTISEVTAAIKGQNLQAAAGTVGQNPTNGEQAFQYPIKIEGRL---- 240

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                      T +   +I+      +         I                 +     
Sbjct: 241 ----------VTPEQFGNIAIKSSNGKVLHLKDVARIQIGAKGYDLIAKSAHKEVAGFAI 290

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
           S +   +   TI     +         P     V   N      S +  K T      LV
Sbjct: 291 SLQNDANALETIANVKKVLDEQSKSFPPDMQYNVVVDNTKFVSASINEVKHTFVEALLLV 350

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           L V+++ +   +  ++   ++ ++++ T     LL  ++   ++  +VL IGL VD  I+
Sbjct: 351 LFVVYVFLQSWRSTIIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIV 410

Query: 434 VNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           V E +  E          +           +       +   V + F GG      + FA
Sbjct: 411 VVEAVEYELKYNGLPPKEAAIKAMENVQGPVIGIAFVLVAVFVPVAFMGGMTGILYKQFA 470

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +T+ +S++IS   A+ +  A+   +++    K  +     +       +           
Sbjct: 471 LTIAVSVVISAIIALVLTPALCATMLKPHTPKEREDWVHRQLNKFNAGLERFSDWYGIQL 530

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
             +S   S+  I LL   G    +            +    +  V     +     ++  
Sbjct: 531 ARLSHRLSLTVIALLIFAGGTGLVFHFLPTSFVPAEDSGYYMIAVNEPPGATSERTMATL 590

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                         +P D      V  +    I      S+                +  
Sbjct: 591 EKIASFLEGKNDPEKPKDEQLFQGVFTVAGFDILGNGQKSSAGVIFATMSDWKYRTTQAT 650

Query: 670 IVGVIIS 676
            +  ++ 
Sbjct: 651 SINAMVG 657



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +  +  + + +  T G F L     N   + A++  IG  V+D +VV + +    
Sbjct: 360 SWRSTIIPMIAVPVSLLGTFGAFVLLDFSINTLTLFAMVLAIGLVVDDAIVVVEAV--EY 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +L    +  ++   K++    G  +  +       +P+A  GG        FA+ +A  +
Sbjct: 418 ELKYNGLPPKEAAIKAMENVQGPVIGIAFVLVAVFVPVAFMGGMTGILYKQFALTIAVSV 477

Query: 806 VVAASSSIFIAAPI 819
           V++A  ++ +   +
Sbjct: 478 VISAIIALVLTPAL 491



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 65/167 (38%), Gaps = 12/167 (7%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF------NL 720
            + I+ + +  + + + +   ++ W      + ++   +        L           ++
Sbjct: 881  QTIMILGLGLVFVFLILAALYESWKVPFAVLFSVPSGMIGASLVPFLLNFTGRYSLANDI 940

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 +LTL+G +  + +++ +  +  +++    ++  D   ++    L   + TS A  
Sbjct: 941  YMQIGLLTLVGLAAKNAILIIEYAK--IRVDKRGMNVVDAAIEAAKIRLRPILMTSFAFI 998

Query: 781  ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            + VLP+AV    G     S  I +  G+  A    IFI   + + I 
Sbjct: 999  LGVLPLAVSTGAGSGARTSMGITVVAGMTTATLFGIFIIPMLFIIIE 1045


>gi|149178691|ref|ZP_01857275.1| acriflavine resistance protein (cation efflux system) [Planctomyces
           maris DSM 8797]
 gi|148842466|gb|EDL56845.1| acriflavine resistance protein (cation efflux system) [Planctomyces
           maris DSM 8797]
          Length = 1054

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 82/545 (15%), Positives = 165/545 (30%), Gaps = 41/545 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++   ++  +G +      L Q  +D  P     +              + E  
Sbjct: 9   QRPITTLMSSLVLVMLGGVS-----LSQLAVDLMPDIQNPSV---------SVITLYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D     +    ++  S +      + S  +  + + L F          ++V   L  
Sbjct: 55  GPDEAEKQITRPIEQNLSSVSGIENILSSSMEGSSTVRLQFQWGTDLNLAINEVRDSLNK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + +KL    +   +      +  I+    N D      I  +     Q I Q    E   
Sbjct: 115 LRNKLPEGAEDPYIRHFDVADRPILYLGLNSD---LDPITLTRLTENQIIPQFEQLEGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I  ++    D S+L  L     ++       N ++    +    L     +Q 
Sbjct: 172 RVRMRGAIEREIQINLDRSKLESLNMGVNEVINALKQENINQPAGNYEEGHLNLHIRSQG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D  +I    +                                   +        +  
Sbjct: 232 EFTDLDQIENTVVREQA--------------------GATVHVRDIAEVVDGEKERTELT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            ++  +     +        +      +KL I    N      S + 
Sbjct: 272 RMNGQPGILLYVYKQSGANTISVSDQVQKQVERVNKSLPDMKLTIRV-DNSEYIRQSIAN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +       GL ++VL + +   +  LV    + L+V+ T  L+   G TL + S  G+ 
Sbjct: 331 IQEAALYGMGLAILVLIVFLRSFRSVLVIGVCMPLSVLATFTLIYFQGFTLNIISFGGLA 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LG+GL VD++I+V E I  +  +      +   G     S I  S +T LI  + L F  
Sbjct: 391 LGVGLLVDNSIVVLESIFRKREEGLDPKTAAIEGTEEVSSAIIASTLTTLIIFLPLIFIH 450

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G     +   A  +  S++ S+F ++++   M  + I  +            F LI    
Sbjct: 451 GTTGILLHQLAWVVSFSLVCSLFASLTLTPVMSAYWIPEQATTPHTGWTRYWFKLIDGFH 510

Query: 539 AIQFM 543
            + + 
Sbjct: 511 HLNYQ 515



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 85/249 (34%), Gaps = 6/249 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              +   A   V +  +   ++  +      +        L   +    ++++ +  ++ 
Sbjct: 241 NTVVREQAGATVHVRDIAEVVDGEKERTELTRMNGQPGILLYVYKQSGANTISVSDQVQK 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             +++ + +P   +         I + +       +    +A+L+ I     +   L   
Sbjct: 301 QVERVNKSLPDMKLTIRVDNSEYIRQSIANIQEAALYGMGLAILVLIVFLRSFRSVLVIG 360

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + L +  T       G   N+ +   +   +G  V++ +VV + +    +     +  
Sbjct: 361 VCMPLSVLATFTLIYFQGFTLNIISFGGLALGVGLLVDNSIVVLESI---FRKREEGLDP 417

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIF 814
           +    +   E     + +++   I  LP+    G+    +   A  ++F +V +  +S+ 
Sbjct: 418 KTAAIEGTEEVSSAIIASTLTTLIIFLPLIFIHGTTGILLHQLAWVVSFSLVCSLFASLT 477

Query: 815 IAAPILLFI 823
           +   +  + 
Sbjct: 478 LTPVMSAYW 486



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 88/224 (39%), Gaps = 6/224 (2%)

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               + +    + +    +   +   +      V+  +++ ++ I   S    +     + 
Sbjct: 802  FQPNEAPVVIERQNQQRILRVFADVEGRDLGSVVPELEENLSAIQVPSGFSVSVAGDWEE 861

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNL 720
             ++       G I++ + M + +  +++        +  + L +   +  F       N+
Sbjct: 862  QQKSFTALKQGFILAILLMYMIMASQYESLSDPFYILFAVPLGMMGVIWVFVFTDTTLNV 921

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +   ++ L G  VN+ +V+ D + +  + +       +LI ++        + T++   
Sbjct: 922  QSFIGIVVLSGIVVNNAIVLVDYINQLRRRFPER-PVNELIIQAATRRFRPILMTTLTTV 980

Query: 781  ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            ++++P+A+    GG +    A  +  G++   + ++ +A P++ 
Sbjct: 981  LAMIPIALGWGEGGELQAPMARVVVSGLIAGTTITL-LAIPLIY 1023


>gi|148242409|ref|YP_001227566.1| preprotein translocase SecF subunit [Synechococcus sp. RCC307]
 gi|147850719|emb|CAK28213.1| Preprotein translocase SecF subunit [Synechococcus sp. RCC307]
          Length = 319

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 75/288 (26%), Positives = 133/288 (46%), Gaps = 8/288 (2%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
             V +S+L  + S        L  G+DF GG  + V  N     + +        +   +
Sbjct: 29  VLVALSVLGLVLSWLSPIKAPLKPGLDFTGGTSIQVERNCGDRCAELTVQQVQDALPAAA 88

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                 +   +         + +   V  + +     I           +GP + ++L+ 
Sbjct: 89  VVQLLDDGQAVSIRSSALSPADSGAFVDALEQVAGPLIATD---TQINTIGPVLGKQLLT 145

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI----EFNLTAV 723
             ++ + +S  A+ +YI  R+   +A  A+  L  D+  T G FA  G+    E N    
Sbjct: 146 SSVLALTVSFAAVALYISARYARLYAALALLALAHDVLITSGLFAWLGLFAGVEVNSLFA 205

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            A+LTL GYSVND VVV+DR+R+  +L    +S  D +D++++ TL RS+YTS++  I +
Sbjct: 206 VALLTLAGYSVNDTVVVFDRIREQQRLLP-DLSVEDQVDRAVDGTLTRSIYTSLSTEIPI 264

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           L + ++GG+ +  FA+ +  GI V A SS+ +  P+L  +     + A
Sbjct: 265 LALILFGGASLQWFAVALFVGIAVGAWSSVAVVPPLLPLMGGRLPQRA 312


>gi|56751372|ref|YP_172073.1| preprotein translocase subunit SecD [Synechococcus elongatus PCC
           6301]
 gi|56686331|dbj|BAD79553.1| protein-export membrane protein SecD [Synechococcus elongatus PCC
           6301]
          Length = 464

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 130/515 (25%), Positives = 212/515 (41%), Gaps = 76/515 (14%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL----EVDEDDFVNG 68
           +I  + L+ A    L Q              I LGLDL+GGS L +      +     + 
Sbjct: 8   LILILALVAAAIFVLVQLP------------IRLGLDLQGGSQLTILVKPTAEIPSVGDR 55

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
            L+     + + +   G+    ++    +KI +        E     +    Q    + N
Sbjct: 56  ELEAVQRVIENRVNGLGVSEAVIQTAGSDKILVQLPGVSNPEQAERVLGGTAQLEFREQN 115

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              +  +         +    +          + +  + + +   ++             
Sbjct: 116 PGTEAQVTPLQQLVSQARGALEIERRNGDPTKVAELEQTLERSQVELAKFFG-------- 167

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                               T   +      P  +   +   +RF  +       +   +
Sbjct: 168 ----------------PAQITGKSLKDALAQPTQTGNTWEVALRFDTEGGDQFAALTKNL 211

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
             +G  +                                         V++   V+    
Sbjct: 212 AGTGRSIGIFL-----------------------------------DGVLISAPVVGPEF 236

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
               I  G A I+G FT E A  LA  LR G+LP+ + IVE R VGA LG DSI +   A
Sbjct: 237 AQTGITGGSAVITGRFTTEQAEDLAIQLRGGALPLPVEIVENRTVGATLGRDSIQRSIYA 296

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + GL+L+++FM+  Y   GL+AD S+ +  +L+LA   LLG TLTLP IAG +L IG+A
Sbjct: 297 GIGGLLLVLIFMVAYYQLPGLIADISLAIYALLSLAAFDLLGVTLTLPGIAGFLLSIGMA 356

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ER REE R  +S++ S++ GF RA+S+I DSN+T LIA   LF+   G V+G
Sbjct: 357 VDANVLIFERTREELRAGKSLYRSVESGFYRAFSSILDSNVTTLIACGALFWLSSGLVKG 416

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           FA+T+ + +++SMFTAI+  R +M   I Y  ++ 
Sbjct: 417 FALTLAIGVMVSMFTAITCSRTLMFLAIAYPALRK 451



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 88/225 (39%), Gaps = 4/225 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+ + I          +           G    +      ++ +   +     I     V
Sbjct: 222 LDGVLISAPVVGPEFAQTGITGGSAVITGRFTTEQAEDLAIQLRGGALPLPVEIVENRTV 281

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ I++ I   I   + +LI++   ++    L A  +L +    +L  F L G+ 
Sbjct: 282 GATLGRDSIQRSIYAGIGGLLLVLIFMVAYYQLP-GLIADISLAIYALLSLAAFDLLGVT 340

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  L  IG +V+  V++++R R+ ++      S    ++          + +++
Sbjct: 341 LTLPGIAGFLLSIGMAVDANVLIFERTREELRA---GKSLYRSVESGFYRAFSSILDSNV 397

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +      ++  FA+ +A G++V+  ++I  +  ++  
Sbjct: 398 TTLIACGALFWLSSGLVKGFALTLAIGVMVSMFTAITCSRTLMFL 442


>gi|84500079|ref|ZP_00998345.1| AcrB/AcrD/AcrF multidrug efflux pump [Oceanicola batsensis
           HTCC2597]
 gi|84392013|gb|EAQ04281.1| AcrB/AcrD/AcrF multidrug efflux pump [Oceanicola batsensis
           HTCC2597]
          Length = 1047

 Score =  148 bits (372), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/637 (10%), Positives = 160/637 (25%), Gaps = 52/637 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L ++I   GL       L    +   P                   + +  D
Sbjct: 28  RRPILAFVLSALIVIAGLA-----GLAGVEIRELPDVDRPV-------------VTVTTD 69

Query: 62  EDDFVNGFLQMY----SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +        +     +        + R  ++++TL F D    +  A     
Sbjct: 70  FPGASPETVDQEITARVEGAVGRVSGIRTISSNSRYGRSRVTLEFGDDVDLDVAATDTRD 129

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  + ++L    +   +V        +V              E +  +  +  D++   
Sbjct: 130 AMARIGNQLPEGAEDPRIVKADANAQPVVRVAVTS--RTRSPQELTELVANRVEDRLISV 187

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                             + D  +L     T A +                       + 
Sbjct: 188 AGVADLQVYGDREPIFRVDIDQRKLAARGLTLANLRSALGTVAFDVPAGDLSGERQTINV 247

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               L+        + +                                   +    A  
Sbjct: 248 RTTALISTAEAFEDLEVAEN------------------------VLLGDVARVSLGPAPN 283

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +A  +          +   L           V   +     G
Sbjct: 284 ETVLRANGQTGIGIGVIRQATSNTLEISANVRRVVEDLSQSLPEDVSIFVTSDDATFING 343

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T  +   +V+ ++F+ +   +  L+   ++ + +I T+A L L+G ++ + ++
Sbjct: 344 SITEVLKTLGLAVAIVIAIIFLFLRDIRATLIPALTMPVALIGTIAALYLVGFSVNILTL 403

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL  G+ VD  I+V E I            +  +G    +  +  +  T     + L
Sbjct: 404 LALVLATGMVVDDAIVVLENIVRHRGMGTGPRAAAVIGTQEVFFAVVTTTATLAAVFIPL 463

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-KSIDINPLSRFFL 533
            F  G      R F  T+ +++++S   A+++   +   ++                  L
Sbjct: 464 SFLPGQVGGLFREFGFTLAIAVMLSSVVALTLCPVLASRLLTRPMKEDQRGPMIWLGNRL 523

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                           V + I     +   + +  +   +  +    + +L+        
Sbjct: 524 AGFYRRTLHWALSGPLVILVIAGLFAATAYMMSGSIRNELTPREDRAVVLLSITAPQGVA 583

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           +      +   + + Q                  +  
Sbjct: 584 LNYTTGKMAEIEEAIQPLRDSGEVTSVFSIAGFGNRN 620



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 81/252 (32%), Gaps = 7/252 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +     V L  V          +   +        +  ++    +++  +  +  V + 
Sbjct: 261 DLEVAENVLLGDVARVSLGPAPNETVLRANGQTGIGIGVIRQATSNTLEISANVRRVVED 320

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTL 700
           +++ +P                  I + +  + ++   ++  I          L    T+
Sbjct: 321 LSQSLPEDVSIFVTSDDATFINGSITEVLKTLGLAVAIVIAIIFLFLRDIRATLIPALTM 380

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L G   N+  + A++   G  V+D +VV + +   ++        R  
Sbjct: 381 PVALIGTIAALYLVGFSVNILTLLALVLATGMVVDDAIVVLENI---VRHRGMGTGPRAA 437

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
                 E     V T+       +P++   G V      F   +A  +++++  ++ +  
Sbjct: 438 AVIGTQEVFFAVVTTTATLAAVFIPLSFLPGQVGGLFREFGFTLAIAVMLSSVVALTLCP 497

Query: 818 PILLFIYDWRAK 829
            +   +     K
Sbjct: 498 VLASRLLTRPMK 509



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/289 (10%), Positives = 91/289 (31%), Gaps = 7/289 (2%)

Query: 546  RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
            R    G S+              L+          L  +  R  D  ++  +        
Sbjct: 742  RAVLDGRSVGELFIDDTSFDIQMLSSSHPVNDPSDLENVFVRAGDGQMIPMSTFVSLSER 801

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                  + E                         +++ + +     +   +       + 
Sbjct: 802  AVAPELNREGQNRSVEISAGLTPEMSLGAAMAEVERLGQELLAEENRIVPLAEAATLDQT 861

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                ++    + + + + +  +F+ +  A+  + T+ L +   +    L G+  N+ +  
Sbjct: 862  SSGMLMTFGFAILVVFLVLSAQFESFISAIVVMCTVPLGLACAVIAMVLTGMSLNVYSQI 921

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ LIG    + +++ +      +L     + RD I ++ +  L   + T  +  +  +
Sbjct: 922  GLVMLIGIMAKNGILIVEFAN---QLRDRGYALRDAIFEASSIRLRPVMMTMTSTVLGGV 978

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+ +    G     +    +  G+ +A  S++++     L +  +    
Sbjct: 979  PLILSSGAGAEAREALGWVIVGGLGLATISTLYLTPVAYLLLARFSTPK 1027


>gi|68536129|ref|YP_250834.1| preprotein translocase subunit SecD [Corynebacterium jeikeium K411]
 gi|68263728|emb|CAI37216.1| protein-export membrane protein SecD [Corynebacterium jeikeium
           K411]
          Length = 627

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 105/518 (20%), Positives = 193/518 (37%), Gaps = 43/518 (8%)

Query: 45  SLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD 104
            LG+DL+GG+ + L    D      L      L + +   G+   S+    N + ++   
Sbjct: 46  KLGIDLQGGTRVTLVPQGDTPTPDQLSQARTILENRVNGMGVSGASVVTDGNNLVITVP- 104

Query: 105 SRFKENIADK---VTLFLQGVNSKLNVDPKKNLLVTTTEKEIS---IVLSQNNIDQVIS- 157
                          L  +               V           I+  +   +++   
Sbjct: 105 GSDAGEARSLGKTSQLLFRPEAQPGQPTKDFPEAVKKMANRWVENGIITPEFANERLSRM 164

Query: 158 -------HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
                     +   E+           +S  ++    + +  L  ++  +   +     A
Sbjct: 165 VKAFPQLGLKDAPKELKVTAKPPAEPKDSVEEQERRDKQVEVLKADRQSTDGNKQQAAGA 224

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV----------EDKVEISGIHLNGA--- 257
            +   K  P          +    D                  ++   ++G  ++     
Sbjct: 225 LLDCEKNDPMAGSDDADKPLVTCSDQGPMVLGPAPLLKGETDEKNGERLTGEMIDTNSQI 284

Query: 258 ----TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-I 312
                 N                 G   +F + +  +GK +A+ LD +V++AP I     
Sbjct: 285 TGGLQPNSAQMAITFKFKTGEQTPGGETWFALGQQMMGKRVAITLDSKVISAPEIQSPTP 344

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTC 366
           P   +QI+G+F+ + A  LA  LR G+LP+               +   LG+ S+  G  
Sbjct: 345 PGEVSQITGSFSEKEAQDLANNLRYGALPLSFVGENGEPGGTTTTISPSLGAASLKAGVI 404

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVL 422
           A + GLVL+ L+ +  Y   G+VA  S+     L    + LLG     +L L  IAG+++
Sbjct: 405 AGLVGLVLVGLYALAYYRGLGVVAIISLIAAFSLVYGFIVLLGRWIGYSLDLSGIAGLII 464

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           G+G   DS ++  ERI+++ +   +   ++   + RA STI   NI +LIA V+L+F   
Sbjct: 465 GLGTTADSFVIYFERIKDDIKNGSTFRSAVPRAWQRARSTIVTGNIVSLIAAVILYFLAV 524

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           G V+GFA T+GL+ +  +  A  +   +MI + R    
Sbjct: 525 GDVKGFAFTLGLTTVFDLVVAFLLTAPLMILMSRRPSF 562



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/227 (13%), Positives = 84/227 (37%), Gaps = 8/227 (3%)

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            +I      GE + +     +         +                   T  + P +  
Sbjct: 337 PEIQSPTPPGEVSQITGSFSEKEAQDLANNLRYGALPLSFVGENGEPGGTTTTISPSLGA 396

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFN 719
             ++ G++  ++  + + +Y    ++    + AI +LI   +   GF  L G       +
Sbjct: 397 ASLKAGVIAGLVGLVLVGLYALAYYR-GLGVVAIISLIAAFSLVYGFIVLLGRWIGYSLD 455

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L+ +A ++  +G + +  V+ ++R++ ++K      +FR  + ++        V  ++ +
Sbjct: 456 LSGIAGLIIGLGTTADSFVIYFERIKDDIK---NGSTFRSAVPRAWQRARSTIVTGNIVS 512

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I+ + +       +  FA  +    V     +  + AP+++ +   
Sbjct: 513 LIAAVILYFLAVGDVKGFAFTLGLTTVFDLVVAFLLTAPLMILMSRR 559


>gi|302038816|ref|YP_003799138.1| multidrug efflux system subunit B [Candidatus Nitrospira defluvii]
 gi|300606880|emb|CBK43213.1| Multidrug efflux system, subunit B [Candidatus Nitrospira defluvii]
          Length = 1037

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/519 (11%), Positives = 142/519 (27%), Gaps = 38/519 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+    I   G L        Q  +   P                          
Sbjct: 10  RPVATVLTMIAILLAGALA-----YRQLPVSALPQVDYPTIQ---------VMTFYPGAG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + +TL F+     +    +V   +   
Sbjct: 56  PDVMTSSITAPLERQFGQMPGLNQMTSTSSGGSSVVTLQFSLDIDLDVAEQEVQAAMNAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +      + +L+   +        +       +   +I        
Sbjct: 116 ATFLPRDLPAPPVYSKVNPADAPILT-LALTSATLPLPQVRDFAETRFAQKISQLSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L     T   +       N ++    F              
Sbjct: 175 VSISGGQRPAVRIQANPRALAAYGLTLEDLRTVVAAANVNQAKGGFDGPRRASIINATDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                       +                 +   +        
Sbjct: 235 LFAGKD--------------------YKALIVAYRNGAPVRLSEVAEVIDDVENTKQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   L+          V      +   +    
Sbjct: 275 MNETPAVIVNIQRQPGTNVIEVVDRVKRLLPQLQGTLPSSVQVSVLTDRTTSIRATVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   ++ L++I T  L+  +G +L   ++  + +
Sbjct: 335 QFELVLAVALVILVIFLFLRTIPATVIPAVAVPLSLIGTFGLMYPMGFSLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +S F +   G  +   TI    ++ +   + L F G 
Sbjct: 395 STGFVVDDAIVMIENIARYIEQGESPFQAALKGSKQIAFTILSLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
             G   R FA+T+ ++ILIS   ++++   M   ++R +
Sbjct: 455 VVGRLFREFAVTLSITILISAIVSLTLTPMMCARLLRER 493



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 94/255 (36%), Gaps = 8/255 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV LS V   ++ ++    +    +     +   +    + +     ++ +  
Sbjct: 246 VAYRNGAPVRLSEVAEVIDDVENTKQAAWMNETPAVIVNIQRQPGTNVIEVVDRVKRLLP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
           ++   +P S   +         R  +R     ++++   +++ I++  +     +     
Sbjct: 306 QLQGTLPSSVQVSVLTDRTTSIRATVRDVQFELVLAVALVILVIFLFLRTIPATVIPAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + L +  T G     G   N   + A+    G+ V+D +V+ + +    +      S   
Sbjct: 366 VPLSLIGTFGLMYPMGFSLNNLTLMALTISTGFVVDDAIVMIENI---ARYIEQGESPFQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              K   +     +  +++    ++P+   G   G +   FA+ ++  I+++A  S+ + 
Sbjct: 423 AALKGSKQIAFTILSLTVSLIAVLIPLLFMGDVVGRLFREFAVTLSITILISAIVSLTLT 482

Query: 817 API-LLFIYDWRAKN 830
             +    + + RA+ 
Sbjct: 483 PMMCARLLRERRAEQ 497



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 102/283 (36%), Gaps = 6/283 (2%)

Query: 554  ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +      +              KG   L  L  R    SV  +    +    +       
Sbjct: 741  VSTMFTQLNQYRVILEVMPEFQKGPEALQQLEVRGSGGSVPLNVFTRVTETMVPLVISRQ 800

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +      +    +  +++   E+   ++I+ +     +  +  +    + +
Sbjct: 801  GQFPAVTISFNLAPGGSLGEAVTAIRQVTQELGLPASIRGSFQGAAQAFQSSLEHEPLLI 860

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + I + I + I ++ +   L  ++TL       L    LF +EF++ A+  ++ LIG 
Sbjct: 861  LAALITVYIVLGILYESYIHPLTILSTLPSAGVGALLALMLFRMEFSIIALIGIILLIGI 920

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   +         S    I ++        + T+MAA    LP+A+    
Sbjct: 921  VKKNAIMMIDFALE--AERNEGKSPEQAIYEAGLLRFRPIMMTTMAALFGALPLAMGSGV 978

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     I +  G+VV+   +++    + L +    A+  R
Sbjct: 979  GSELRQPLGIAIVGGLVVSQLLTLYTTPVVYLALDRVAARFRR 1021


>gi|315635822|ref|ZP_07891084.1| protein-export membrane protein SecD [Arcobacter butzleri JV22]
 gi|315479801|gb|EFU70472.1| protein-export membrane protein SecD [Arcobacter butzleri JV22]
          Length = 521

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 171/541 (31%), Positives = 291/541 (53%), Gaps = 36/541 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   + ++++ +    G+ +++P+                 +ISLGLDL+GG HL+L V
Sbjct: 1   MKIFNYKLVIFLISIIFGIALSIPSLFQTEHG---------KKISLGLDLQGGLHLLLGV 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  + V   ++  +  ++ F   E + +  +    + IT S  D      +   +     
Sbjct: 52  NTHEAVTSKIKSVATSIKYFSDDEELLIDGLTIENDTITFSVLDKDEIPKMDTMLKEI-- 109

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      K L ++ T+ E  I L++ +  +    A+ Q++E IR R+DQ G+SE T
Sbjct: 110 -----------KGLDISITDLEYHIKLTKEDEIKTKDFAVSQAVETIRNRLDQFGLSEPT 158

Query: 181 IQRLGSHRILIQLPGEQDPSR---LRQLLGTTAKMSFHKVLP--------NNSKKGFMFG 229
           + R G   I++QLPG +        R+L+   A +    V            S +   +G
Sbjct: 159 VLRQGETDIVVQLPGIKTAEEEKSARELISKPANLELMAVDEDRASQVYSMTSSQAAAYG 218

Query: 230 VRFLRDSDGNQ--YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              L D++ +   YLV++   ++G  +  A  +F  +  +PV+  + +  GAR F + T 
Sbjct: 219 DLILEDTNDSNKKYLVKEIPILNGSQIVDAHVSFSQQN-QPVIGFTLNSAGARIFGDFTA 277

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            N+GK LA+VLDG+V +AP IN+ I  G  QISG FT+  AG +A  L++G+LP  + ++
Sbjct: 278 KNVGKRLAIVLDGKVYSAPNINERIGGGNGQISGGFTVAEAGNVAIALKSGALPATVTLL 337

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E+R+VG  LG+DSI     A+V+G VLI LFMI  Y + GL+A+ ++  N+ + + +++L
Sbjct: 338 EKRSVGPSLGADSIKASMLALVSGTVLIFLFMIAYYRRAGLIANVALVANIFIIIGVIAL 397

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            GATLTLP +AGI+L IG+A+D+N+++NERIRE  R   ++  +++ G+S A   I D+N
Sbjct: 398 FGATLTLPGMAGIILTIGMAIDANVIINERIREVLRMGATIPKAIEDGYSNAMRAIVDAN 457

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           IT L+  VVL+ +G G ++GFA+T+ + IL SM T+I   + +   I+            
Sbjct: 458 ITTLLVAVVLYAYGTGPIKGFAVTIAIGILTSMLTSILGTQGIYQAILPKIVKDKDHKKW 517

Query: 528 L 528
            
Sbjct: 518 F 518



 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 77/158 (48%), Gaps = 4/158 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I+  ++ ++   + + +++   ++    L A   L+ +I   +G  ALFG
Sbjct: 341 SVGPSLGADSIKASMLALVSGTVLIFLFMIAYYR-RAGLIANVALVANIFIIIGVIALFG 399

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +++  V++ +R+R+ +++     +    I+   +  +   V  
Sbjct: 400 ATLTLPGMAGIILTIGMAIDANVIINERIREVLRM---GATIPKAIEDGYSNAMRAIVDA 456

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
           ++   +  + +  +G   I  FA+ +A GI+ +  +SI
Sbjct: 457 NITTLLVAVVLYAYGTGPIKGFAVTIAIGILTSMLTSI 494


>gi|121607769|ref|YP_995576.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
 gi|121552409|gb|ABM56558.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
          Length = 1040

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 74/568 (13%), Positives = 169/568 (29%), Gaps = 39/568 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L  ++  +G +        +  +  +P                   +     
Sbjct: 9   RRPVFATVLSLLVLLVGAVS-----FTRLTVREYPKIDEPVVT---------VRVRYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +    +     R  Q++I++ F   +  ++ A  V      
Sbjct: 55  SAEVIESQVTKPLEDSIAGIDAVDVISSISRAEQSQISVRFRLEKDADDAAADVRDRTAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L     + ++         ++    + D      +E +  + R    ++       
Sbjct: 115 VRRRLPDAIDEPVIAKVEADASPVLWLAFSSD--QRSPLEINDLVNRIVKPRLQTVTGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP RL      T  +       N          +    S  +Q 
Sbjct: 173 DVPLYGERRYAMRVWLDPGRLAAYRLDTRDVEDAIRRSNLGLPAGRIESQQREFSVTSQT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +   I +                      +            + +  A      
Sbjct: 233 DLSTPAQFGAIVIRT--------------------VNGFPVRIRDVARVEEGPADERSRV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +A  +     +    +   LRA      +  V   N      S   
Sbjct: 273 RLNGRDAISVGVIRQATANPLEVSQGVRAMMPRLRADLPADLVMDVASDNSLFIDRSIQS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+F+ +   +  ++   +I ++++ + AL+SL G ++   ++  +V
Sbjct: 333 VYRTIAEAVVLVALVIFVFLRTLRAAIIPIITIPVSLVGSFALMSLAGFSINTLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I     + +  F +   G       I    +T +     L F  
Sbjct: 393 LAIGLVVDDAIVMLENIYRHIEQGRDPFSAAIAGAREIGFAIVAMTLTLVAVYAPLAFTP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    FA+ +  ++++S F A+S+   M   ++R+          + R+       
Sbjct: 453 GRTGRLFAEFALALAGAVVVSGFVALSLSPMMCSLLLRHNLRPGRFDRAMERWLTALSQA 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFT 566
             + +R             + +I     
Sbjct: 513 YGRLLRWVVTARWSGHGAVLGTIFQARM 540



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 63/157 (40%), Gaps = 7/157 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +F+ +   L  + ++ L +   L      G   N+ +   ++TL+G 
Sbjct: 868  LLALVFIFLVLAAQFESFIDPLVIMVSVPLSMVGALLALQWSGGSLNVYSQIGLITLVGL 927

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++ +      +L    ++  D + ++  + L   + T+ A  +  +P+A+    
Sbjct: 928  ITKHGILIVEF---TNQLRAQGMAPIDALVRASAQRLRPILMTTGAMVLGAIPLALAKGA 984

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G          +  G+ +    ++F+   +   +   
Sbjct: 985  GAETRTQIGWVIVGGMSLGTLLTLFVVPTVYTLLARK 1021



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 89/260 (34%), Gaps = 7/260 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I +  +   PV +  V    E         +    +   +  ++    + +  ++ + 
Sbjct: 241 GAIVIRTVNGFPVRIRDVARVEEGPADERSRVRLNGRDAISVGVIRQATANPLEVSQGVR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
            +  ++   +P   + +            I+     +  + + + + I++  +    A+ 
Sbjct: 301 AMMPRLRADLPADLVMDVASDNSLFIDRSIQSVYRTIAEAVVLVALVIFVFLRTLRAAII 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            I T+ + +  +    +L G   N   + A++  IG  V+D +V+ + +    +      
Sbjct: 361 PIITIPVSLVGSFALMSLAGFSINTLTLLALVLAIGLVVDDAIVMLENI---YRHIEQGR 417

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSS 812
                      E     V  ++       P+A   G        FA+ +A  +VV+   +
Sbjct: 418 DPFSAAIAGAREIGFAIVAMTLTLVAVYAPLAFTPGRTGRLFAEFALALAGAVVVSGFVA 477

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + ++  +   +     +  R
Sbjct: 478 LSLSPMMCSLLLRHNLRPGR 497


>gi|325855019|ref|ZP_08171735.1| RND transporter, HAE1 family [Prevotella denticola CRIS 18C-A]
 gi|325483997|gb|EGC86937.1| RND transporter, HAE1 family [Prevotella denticola CRIS 18C-A]
          Length = 1087

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 75/699 (10%), Positives = 182/699 (26%), Gaps = 56/699 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G +      L    ++++P   P               + +   
Sbjct: 8   KRPVLSTVISIFFVLLGAI-----GLVSLPIEQYPDIAPPT-------------ISIMTS 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                   +       L   +   E +         N    IT+ F      +  A  V 
Sbjct: 50  YQGADAQTVLNSVITPLEESINGVENMTYMQSTATNNGTAMITVYFKQGSDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    + L  +  +  +  +  +  ++V+     D         +       +  +  
Sbjct: 110 NRVSQAQALLPAEVTRVGVTVSKRQTSNVVMYSLTTDDGRYDDEFLTNYNNINIVPMLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P +++Q     + +S      N       FG +     
Sbjct: 170 ISGVGDVQTPGVKTYSMRIWLQPEKMKQYGLVPSDISGALAEQNIEAAPGSFGEQSNLKY 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    I       +         +      
Sbjct: 230 ----------------EYTMRYKGRLKTPEEYGNIIISSNTNGQTLHLRDVAKVEMGGLQ 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          + +  A  +            A  +    P     +E+       
Sbjct: 274 YSVAMKNNNRPAVIGMVNQIAGSNATDIANNVKAALADAQKQMPPGMKVTIEQDVTEFLF 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV  V+++ +   +  L+   ++ + +I T   L + G ++ L +
Sbjct: 334 ASIEEVIRTLIITLVLVFFVVYVFLQDFRSTLIPMIAVPVALIGTFFFLWVFGFSINLLT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ ++L I + VD  I+V E +  +      S   +     +     I    +      V
Sbjct: 394 LSALLLAIAIVVDDAIVVVEAVHAKLDLGYKSALTAAIDAMNEISGAIISITLVMSAVFV 453

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM----KSIDINPL 528
            + F GG +    R F +TM +SI+IS   A+++  A+    ++        K +     
Sbjct: 454 PVSFIGGTSGTFYREFGVTMAVSIVISALNALTLSPALCAIFLKPHGKDEEGKKLSRIDR 513

Query: 529 SRFFLIPDCIAIQ---------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                      +           +  ++      ++  I  +  +         D   G 
Sbjct: 514 FHAAFNVQYEKVNGRYQKIVEKIIGHQWISGIAVVVGIIALVLTMTFTKTGLVPDEDTGT 573

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              +++  P         +       ++   +   +  +V   +  G    Q   +  +K
Sbjct: 574 LFAMVSMSPGTSQAETQKVTDQIDKMLASNPYIERREQIVGYNFLAGQGSDQATFIIKLK 633

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                   L     +   G  I+   I      +++  I
Sbjct: 634 PFAEREYGLFDRIKSVFTGAGIAGLFIDPTSSNMVLGMI 672



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/387 (9%), Positives = 103/387 (26%), Gaps = 30/387 (7%)

Query: 468  ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
               +IA       G     G + ++       +    +I +  +  + +  +        
Sbjct: 681  GAQVIAFAPPMIPGYAMSNGLSFSLEDRTGGDLNKFFNIAQTYLKELNKRPEFSRALTTY 740

Query: 528  LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG--------------- 572
               +      + +   +         +         ++    N                 
Sbjct: 741  NPNYPQYMVDVDVAKAKQAGTSPAAILSVLQGYYGGMYASNFNAYGKLFRVMIQGTAESR 800

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +   G   + V     +       +L+ +       +        +         S    
Sbjct: 801  MSESGLSNIYVRTASGMAPVSEFCSLKRVYGPSNIARFNLFTSISVTATPADGYSSGQAI 860

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFK 689
            +  E V K++                 + S          +I     + +Y+ +      
Sbjct: 861  QAAEEVAKQVLPQGYSYEFSGLTRSEQESSNS------TAMIFILCFVFVYLILSAQYES 914

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            +   L  I ++   +     F  LFG   ++    +++ L+G    + +++ +   +   
Sbjct: 915  YILPLAVILSIPFGLAGAFIFTMLFGHSNDIYMQISLIMLVGLLAKNAILIVEFALE--- 971

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
               T ++ +          L   + TS+A  I +LP+    G       +       G++
Sbjct: 972  RRRTGMAIKYAAILGAGARLRPILMTSLAMVIGLLPLMFASGVGHNGNQTLGAAAVGGML 1031

Query: 807  VAASSSIFIAAPILLFIYDWRAKNARI 833
            +     +F+   +       + +   +
Sbjct: 1032 IGTLCQVFVVPALFSIFQYLQERVKPL 1058


>gi|298480458|ref|ZP_06998655.1| multidrug efflux RND transporter MexF [Bacteroides sp. D22]
 gi|298273279|gb|EFI14843.1| multidrug efflux RND transporter MexF [Bacteroides sp. D22]
          Length = 1143

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/527 (13%), Positives = 146/527 (27%), Gaps = 44/527 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +         +I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSTASNTGSGEISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLVVFSLYDETDTYSESFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q       +S      N       FG    R + 
Sbjct: 171 PGVGDANVLG-QDYSMRIWLRPDVMAQYKLVPGDVSAALAEQNVEAAPGQFGE---RSNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPDGEVLRLKDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               +          
Sbjct: 274 NFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKLNISMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFILSLVGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   V 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMAVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   R F +TM +SI +S   A+++  A+   +++  K 
Sbjct: 454 VSFMGGTAGTFYRQFGMTMAISIGLSALNALTLSPALCAVLLKPHKK 500



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 61/200 (30%), Gaps = 23/200 (11%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDI 704
               E+ G             G+I     + +Y+ +      +   L  + +    L+   
Sbjct: 926  YTYELGGMAREEAQSSGSATGLIFVLCFVFVYLLLSAQYESYILPLAVLLSVPFGLLGSF 985

Query: 705  TKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                G  A+  I      +           A++ L+G    + +++ +     +      
Sbjct: 986  LFVNGVSAIGNISALKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA---LDRRKMG 1042

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAFGIVVAASS 811
            +S            L   + TS+A  + +LP+   +G       +       G+++    
Sbjct: 1043 MSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIGGMLIGMIC 1102

Query: 812  SIFIAAPILLFIYDWRAKNA 831
             IFI   + +     + K  
Sbjct: 1103 QIFIVPVLFVIFQYLQEKVK 1122



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          + + +    +    +  Q    ++      +E +  + ++ +P     
Sbjct: 262 DIAEIQLDRLGYNFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKL 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + +  +I + I + I ++I        L     + + +  T    
Sbjct: 322 NISMNANDFLFASIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFIL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +    TS     +   ++NE  G 
Sbjct: 382 SLVGFSLNLLTLCALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASI--DAMNELGGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V  ++      +P++  GG+       F + MA  I ++A +++ ++  +   +     
Sbjct: 440 IVSITLVMMAVFVPVSFMGGTAGTFYRQFGMTMAISIGLSALNALTLSPALCAVLLKPHK 499

Query: 829 K 829
           K
Sbjct: 500 K 500


>gi|254884398|ref|ZP_05257108.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319642476|ref|ZP_07997127.1| cation efflux transporter [Bacteroides sp. 3_1_40A]
 gi|254837191|gb|EET17500.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317385932|gb|EFV66860.1| cation efflux transporter [Bacteroides sp. 3_1_40A]
          Length = 1056

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 77/678 (11%), Positives = 191/678 (28%), Gaps = 48/678 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +              +  
Sbjct: 9   KKPIMTSLCFLAVAIFGLFS-----LSKLPVDLYPDIDTNTIM---------VMTSYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNSVSNLKHITSKSSENISVITLEFEYGYDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  +    ++   +   I I+L     ++      +         ++ +       
Sbjct: 115 VSSELPDEVNTPIIFKFSTDMIPILLLSVQAEESQPALYKILD---DNVVNPLARVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     ++    DP++L     T   +S      N +  G  F V     S   + 
Sbjct: 172 TVSIAGAPKREVNIYCDPNKLEAYDLTIETISSIVRAENKNTPGGTFDVGSNTYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E+  I +                            +      +   +       
Sbjct: 232 EFKDPKEMENIVVGI--------------------RNGASVYLRDVATVVDSVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +              L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVNISRKVMEQLPKLQKSLPSDVKLGVIVNTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420
              T       V++V+F+ +   +  ++   +I +++I +   L++    +L + S++ +
Sbjct: 332 LTETIMYAILFVVLVVFVFLGRWRATVIICITIPMSLIASFIYLAITDGGSLNIISLSCL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD  I+V E +     +      +   G +    ++  S +T +     L   
Sbjct: 392 SIAIGNVVDDAIVVLENVTTHIERGSEPKQAAIHGTNEVAISVIASTLTMIAVFFPLTMV 451

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI--- 534
            G +    R     M + + IS  +A+S    M   ++R +K +S       +       
Sbjct: 452 SGMSGVLFRQLGWMMCVIMTISTISALSFTPMMCAQMLRLQKKQSKWFVTFYKPIERALD 511

Query: 535 ---PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ-LGVLANRPVD 590
                         R     I+  F    + L+   G+            + V    P+ 
Sbjct: 512 GLDNWYQKRLNWAVRHRKTIIAGCFGFFLLSLICAKGIGTEFFPSQDNSRISVQLQLPIG 571

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R+   + ++ +   + ++G          Q         + +     I+  + L  
Sbjct: 572 ARVERAQALAQELTERWLKKYEGVMRICNYTVGQADADNTWASIQDNGSHIISFNINLYN 631

Query: 651 IQNTEIVGPKISRELIRK 668
                +   ++   +   
Sbjct: 632 PDQRSVTLAEVCDGMRED 649



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++ ++            ++  +V +      +   + V           +P        
Sbjct: 794  KDIGTVVERSAPPTIERKDRERIVTVSAVISGAPLGSVVAAGESIIDKMDLPGGISIQVA 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + V+I  I + I +  +F+   +    + ++    +  L      
Sbjct: 854  GSYEDQQDSFSDLGTLAVLI-IILVFIVMAAQFESLTYPFIIMFSIPFAFSGVLMALYGT 912

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ ++   + LIG  V + +V+ D +          +S    +  S    L   + 
Sbjct: 913  GTTLNVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGMSVIHSVVVSGRSRLRPVLM 969

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++   + ++PMA+ GG    +     + +  G+ V+   ++ +   +         K  
Sbjct: 970  TTLTTILGMVPMAIGGGEGSEMWQPLGVSVIGGLTVSTVLTLILVPVLYCSFAGTGIKRN 1029

Query: 832  R 832
            R
Sbjct: 1030 R 1030



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 98/281 (34%), Gaps = 8/281 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +   L   G          I +G+     V L  V + ++S++       N   +  
Sbjct: 220 VGSNTYSLRVEGEFKDPKEMENIVVGIRNGASVYLRDVATVVDSVEERAQETYNNGVQGA 279

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +V  +    +SV  +R +     K+ + +P        +         I      ++ +
Sbjct: 280 MIVVQKQSGANSVNISRKVMEQLPKLQKSLPSDVKLGVIVNTSDNILNTIDSLTETIMYA 339

Query: 677 AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
            + +++ +++   +W   +    T+ + +  +  + A+  G   N+ +++ +   IG  V
Sbjct: 340 ILFVVLVVFVFLGRWRATVIICITIPMSLIASFIYLAITDGGSLNIISLSCLSIAIGNVV 399

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--G 791
           +D +VV + +             +       NE     + +++       P+  V G  G
Sbjct: 400 DDAIVVLENV---TTHIERGSEPKQAAIHGTNEVAISVIASTLTMIAVFFPLTMVSGMSG 456

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +       M   + ++  S++     +   +   + K ++
Sbjct: 457 VLFRQLGWMMCVIMTISTISALSFTPMMCAQMLRLQKKQSK 497


>gi|147679016|ref|YP_001213231.1| cation/multidrug efflux pump [Pelotomaculum thermopropionicum SI]
 gi|146275113|dbj|BAF60862.1| cation/multidrug efflux pump [Pelotomaculum thermopropionicum SI]
          Length = 1038

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 56/544 (10%), Positives = 153/544 (28%), Gaps = 41/544 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +    +  +GL+       P+  +D FP       +                 +
Sbjct: 10  RPLAVTMFIVALVLLGLVS-----FPRLRVDLFPDMEIPVAV---------ITTSYAGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +      +       + + + F      +N  + +   L  V
Sbjct: 56  PAEVEKTVTKPIESAVSTVSNIKEVMSISSYGNSLVIVQFNWGTDVDNAVNDLREKLDMV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D +    +      ++I+             +            ++   E    
Sbjct: 116 RGVLPDDAQPPRTIKADPNAMAIMWLSVEGA----DVVGLKKIAEDIIKPRLERIEGVAT 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S     ++    D +++     +  +++                        G+   
Sbjct: 172 ASISGGREREIRVRLDQAKMETYGLSIPQVTQALA--------------------GDNVS 211

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        + +  T + +  I     G          ++            
Sbjct: 212 GSAGKIEKGSGEISLRVSGEYNTLEDIKKIRVSLGGGNSVALSDIASVEDSFKDANSYTF 271

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +             +  +     ++       L               +      S    
Sbjct: 272 VNGRPSLGIDIMKASGANTVQVAKSIRREIEDLNKTLPAGVKIDTVMDSSEFIRQSIDNV 331

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +     + VL++ +   +  LV    I +++I T  ++   G ++ + ++ G+VL
Sbjct: 332 IEHGLLGGLFAVAVLYLFLRSARSTLVVALVIPISIIATFTMMYFGGQSINVITLGGLVL 391

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
           G+G  VD +++V E I     K   +  +   G +   + +  S    ++  + + F   
Sbjct: 392 GLGSLVDFSVVVLESIYRYLEKGAGLIEAARTGTAEVGTAVIASASAQVVVFLPIVFVQG 451

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   +  A+T+  S + ++ TA+++V  +   +++     ++ ++ L     +    A
Sbjct: 452 IAGLVFKPMALTVSFSHIAALATALTLVPMLSSRLLKNVTPPTVHVSGLKTKNPVSIFSA 511

Query: 540 IQFM 543
               
Sbjct: 512 FLHW 515



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 74/220 (33%), Gaps = 7/220 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                                V   ++ +++                +   E        +
Sbjct: 807  SSQNREVTVTADISGRDSGSVNREIQNRLSSFSLPEGYMFEFGGEARDMAESFSSLGTAM 866

Query: 674  IISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++S + + + +  +F+  F     +  L       +    L G   ++ A+   + LIG 
Sbjct: 867  LLSVVLVFMVMVAQFESLFQPFIIMFCLPPTFVGVVLGLGLTGHAISVPALLGAIMLIGI 926

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG- 791
             +N+ +V+ D +     L          I ++    L   + T++   +++LPMA  GG 
Sbjct: 927  VMNNAIVLVDYIN---TLRKRGYERNQAILEAGPVRLRPILMTALTTVLAILPMAFGGGE 983

Query: 792  --SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                    A+ +AFG+ ++   ++ +   +     D   K
Sbjct: 984  GSESQAPMAVVIAFGLTLSTLITLVLVPVVYTIFDDMGKK 1023


>gi|89901377|ref|YP_523848.1| acriflavin resistance protein [Rhodoferax ferrireducens T118]
 gi|89346114|gb|ABD70317.1| acriflavin resistance protein [Rhodoferax ferrireducens T118]
          Length = 1066

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/562 (10%), Positives = 151/562 (26%), Gaps = 46/562 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N  +  ++   I  +GL         +  +D+FP+      +                
Sbjct: 8   LKNPVFATMVMLAIVVLGLFS-----YQRLQVDQFPNVDFPVVV---------VTTEYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + +           + Q+ + + F         AD V   + 
Sbjct: 54  ASPEIVESEVTKKIEEGVNSIAGINALTSRSYEGQSVVIIEFQLHIIGRKAADDVREKVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA---------IEQSMEIIRQRI 171
            +   L  + K+  ++       ++       D     A         +E +    +   
Sbjct: 114 LLRPTLRTEVKEPRVLRFDPSSRAVWSVAVLPDTPKPGANSAAKVLSDVELTNWADQTLR 173

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++                 ++     P  L     ++ ++       N           
Sbjct: 174 KRLENVRGVGSVTVVGGTKREINIYLQPQALEAFGISSEQVVAAVSNENQDLPMGAIRSL 233

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                   +  ++   +                       I                 + 
Sbjct: 234 EQERVVQIEARMQRPEDFG--------------------KIIVARKNGAPVRVDQIARVV 273

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                     +                 +    I+      A ++    P          
Sbjct: 274 DGAQETDSLALYNGQRTLLLSVQKSQDENTIGVIDGLTQTLAEMQTQLPPGVRLEPVTDG 333

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S S  + T    A L ++++F+ +   +  ++   ++ + +I T   ++L G T
Sbjct: 334 SRQIRVSVSNVRETLFEGALLTILIVFLFLNSWRSTIITGLTLPIALIGTFLFMNLFGFT 393

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           + + ++  + L +GL +D  I+V E I    +  +  F +   G       +  + ++ +
Sbjct: 394 INMVTLMALSLCVGLLIDDAIVVRENIVRHVQMGKKAFPAAMDGTQEIGMAVMATTMSIV 453

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + + F G   G     F +T+  ++LISMF + ++   +                  
Sbjct: 454 AVFLPIGFMGGIIGKFFHEFGVTIVAAVLISMFVSFTLDPMLSSIWNDPSIEAHRHHGLN 513

Query: 529 SRFFLIPDCIAIQFMRARFWGV 550
           +                R  G 
Sbjct: 514 ADGTPRQPVTFYDKTIGRVTGW 535



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 57/155 (36%), Gaps = 8/155 (5%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + +LI       W   +    TL + +  T  F  LFG   N+  + A+   +G  +
Sbjct: 351 GALLTILIVFLFLNSWRSTIITGLTLPIALIGTFLFMNLFGFTINMVTLMALSLCVGLLI 410

Query: 735 NDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +D +VV    R+N+  +                E     + T+M+     LP+   GG +
Sbjct: 411 DDAIVV----RENIVRHVQMGKKAFPAAMDGTQEIGMAVMATTMSIVAVFLPIGFMGGII 466

Query: 794 ---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 F + +   ++++   S  +   +     D
Sbjct: 467 GKFFHEFGVTIVAAVLISMFVSFTLDPMLSSIWND 501



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 82/246 (33%), Gaps = 13/246 (5%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                D    +   + AN      +VR N  +           +                 
Sbjct: 789  RNSPDDLQRLPFTLGANADGSARIVRLNQVATVHESTGSNQINRRDMTREVAVNANVYQR 848

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +   V   +K  +  +      +       K   E     I  ++++ + + + +  +FK
Sbjct: 849  SAGEVSNDIKSALESVNFPPGYRYQFGGSTKNMAESFGYAISALVLAIVFIYMILASQFK 908

Query: 690  WYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMR 745
             +F  L  +T L L +   +    +F    ++ +V  ++ L+G    + +++ D   R R
Sbjct: 909  SFFQPLALMTALPLTLIGVVLALLMFHSTLSIFSVIGIVMLMGLVTKNAILLVDFAIRAR 968

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            ++       +     +  +    L   + T++A    +LP+A+    G          + 
Sbjct: 969  ED------GLERSAALLMAAKVRLRPILMTTLAMIFGMLPLALALTEGSEQRAPMGQAVI 1022

Query: 803  FGIVVA 808
             G++ +
Sbjct: 1023 GGVITS 1028


>gi|91775096|ref|YP_544852.1| acriflavin resistance protein [Methylobacillus flagellatus KT]
 gi|91709083|gb|ABE49011.1| acriflavin resistance protein [Methylobacillus flagellatus KT]
          Length = 1044

 Score =  148 bits (372), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 56/496 (11%), Positives = 138/496 (27%), Gaps = 24/496 (4%)

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +      + VN  +    +     +        S     + ITL F  +         V 
Sbjct: 50  LYPGASPEVVNSMITAPLESQLGRIAGLDEMSSSSSGGASVITLRFNLNTSLGIAEQGVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +   ++ L  D     + +        VL+   +        +    +  +   +I  
Sbjct: 110 AAINTASNLLPNDLPTQPVYSKVNPADVPVLT-LAVTSDALPLPKVQDLVDTRLAQKIAQ 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                    S      +    +P+ L     +   +       N +     F        
Sbjct: 169 ISGVGMVSISGGQRPAVRVSANPTALAAYGLSLESIRTAIASNNLNGSKGSFN------- 221

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                 AN   ++ +   ++                        
Sbjct: 222 -------------GATRSTIIDANDQMRSVEEYRNLVLSYQNGAPIRLKDVAEAYDGAEN 268

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                              +   +    +E    +   L+          +         
Sbjct: 269 EYLAAWANDKPAVIVNIQRQPGANVIEVVERVRDMLPSLKESLPENVHVSILSDRSHTIQ 328

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    +    +  GLV++V F+ +   +  L+   ++ L++I T  ++ L G +L   +
Sbjct: 329 ASVRDTQFELLLAIGLVVLVTFLFLQDARATLIPSIAVPLSLIGTFGVMYLAGFSLNNLT 388

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  + +  G  +D  I++ E I     +  S   +   G  +   TI    ++ +   + 
Sbjct: 389 LMALTIATGFVIDDAIVMLENIERYIEQGDSPLQAALKGSKQISFTIISLTVSLVAVLIP 448

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F     G   R FA+T+ ++IL+SM  ++++   +    +++           +   +
Sbjct: 449 LLFMSDIAGRLFREFALTLAIAILVSMLISLTLTPMLCSLWLKHVPHTEKGRFSQAGARM 508

Query: 534 IPDCIAIQFMRARFWG 549
           +   I       ++  
Sbjct: 509 MQGLITHYGRALKWVL 524



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/212 (12%), Positives = 67/212 (31%), Gaps = 6/212 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             ++ Q          RV +M+      +     +         I   +       ++  
Sbjct: 283 VNIQRQPGANVIEVVERVRDMLPSLKESLPENVHVSILSDRSHTIQASVRDTQFELLLAI 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + +L+           L     + L +  T G   L G   N   + A+    G+ ++D
Sbjct: 343 GLVVLVTFLFLQDARATLIPSIAVPLSLIGTFGVMYLAGFSLNNLTLMALTIATGFVIDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +V+ + +    +      S      K   +     +  +++    ++P+       G +
Sbjct: 403 AIVMLENI---ERYIEQGDSPLQAALKGSKQISFTIISLTVSLVAVLIPLLFMSDIAGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              FA+ +A  I+V+   S+ +   +      
Sbjct: 460 FREFALTLAIAILVSMLISLTLTPMLCSLWLK 491



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 88/246 (35%), Gaps = 6/246 (2%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A   V   V  + L  ++  +         +     + +   ++VA    +  +++ + 
Sbjct: 780  SAGNVVTTQVPLNTLVHVEERNTLLTINHIGQFPAATVSFNLAENVALGDAVAAIREAVA 839

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
             +    ++Q             +   +  ++ + + M I + I ++ +   +  ++TL  
Sbjct: 840  GLQLPGSVQTRFQGAALAFEASLSNTLFLILAALVCMYIVLGILYESFIHPVTILSTLPS 899

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                 +    ++G E  + A+  ++ LIG    + +++ D            +   D I 
Sbjct: 900  ATVGAMLALWVYGHEIGMVAIIGIILLIGIVKKNAIMMID--FALAAEREQGLKPVDAIY 957

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++        + T+MAA    LP+      G  +     I M  G++++   +IF    I
Sbjct: 958  QACLLRFRPILMTTMAALFGALPLMFSTGAGAELRQPLGITMVGGLLLSQLLTIFTTPVI 1017

Query: 820  LLFIYD 825
             L    
Sbjct: 1018 YLMFDR 1023


>gi|296282971|ref|ZP_06860969.1| hypothetical protein CbatJ_05093 [Citromicrobium bathyomarinum
           JL354]
          Length = 1157

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 154/547 (28%), Gaps = 40/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ ++ +   GLL        +  +   P                  ++     
Sbjct: 12  RNPVIPLVFFTALLLAGLLS-----FSRMDVVNNPEIEFPAV---------NVNISQPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +  +  +   + F       +   +VT  +  
Sbjct: 58  APTEIENQITQLVESAVRSINGVKNINSTASEGNSSTFIEFEIGTDPNDAVSEVTNAINT 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L     +  +         + +     D +     + S  I      ++   E   
Sbjct: 118 VRGSLPDGILEPRVSKEEISGGFLGIYAVEADDMTLE--QLSWFIDDVVAKRLLGVEGMA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++    DP  ++    T ++++      N +  G    V   R S     
Sbjct: 176 EVNRFAGVDREIEVILDPQAIQSYGVTASQLNGVLRQNNLNAAGGAAEVGGTRQSVRVLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D   +S   +                         R         +    +      
Sbjct: 236 NSQDAYALSQQQIQL--------------------GDGRTIKLADVATVRDGYSEQTSIS 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +     S     S   T   A      + A +  +    +    V         
Sbjct: 276 KVRDKEVVNFAMSRAKGASDVSTFHDALEEIEKIEAENPGVHFIQL-FNTVKYTEEQYES 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+F  +   +   ++  +I L+ I T   + LLG  L   S+  + 
Sbjct: 335 SMAMMIEGALLAVVVVFFFLRDWRATFISAVAIPLSAIPTFWFMDLLGFNLNSLSLLALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +  + +           +  ++   +   + +    
Sbjct: 395 LVAGVLVDDAIVEIENIVRHMRMGKDAYEASIDAADEIGLPVVATSFCIVAVFLPVGLMP 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ +++L+S+  A  I   +  + ++ K   S    P+   ++     
Sbjct: 455 GISGQFFKNFGITVVVAVLMSLAVARMITPMLAAYFLKSKGHASHGEGPMMDRYMGILHW 514

Query: 539 AIQFMRA 545
            ++  + 
Sbjct: 515 TLERGKM 521



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 81/260 (31%), Gaps = 6/260 (2%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                    Q+ +   R + L+ V +  +         +  D E       + +    V+
Sbjct: 238 QDAYALSQQQIQLGDGRTIKLADVATVRDGYSEQTSISKVRDKEVVNFAMSRAKGASDVS 297

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
                    +KI    P                +      + +  + +A+++  +    W
Sbjct: 298 TFHDALEEIEKIEAENPGVHFIQLFNTVKYTEEQYESSMAMMIEGALLAVVVVFFFLRDW 357

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                +   + L    T  F  L G   N  ++ A+  + G  V+D +V  + +   ++ 
Sbjct: 358 RATFISAVAIPLSAIPTFWFMDLLGFNLNSLSLLALALVAGVLVDDAIVEIENI---VRH 414

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVV 807
                   +    + +E     V TS       LP+ +     G    +F I +   +++
Sbjct: 415 MRMGKDAYEASIDAADEIGLPVVATSFCIVAVFLPVGLMPGISGQFFKNFGITVVVAVLM 474

Query: 808 AASSSIFIAAPILLFIYDWR 827
           + + +  I   +  +    +
Sbjct: 475 SLAVARMITPMLAAYFLKSK 494


>gi|239501768|ref|ZP_04661078.1| nodulation protein precursor [Acinetobacter baumannii AB900]
          Length = 1011

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 65/616 (10%), Positives = 160/616 (25%), Gaps = 48/616 (7%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +GL         +  ++ FP+      +                   + V   +    
Sbjct: 1   MVLGLAS-----WKRMTVEEFPNIDFPFVV---------ITTQYAGASPEAVESDITKKL 46

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
           ++  + +           +  + +   F         A  V   +  V ++   +    +
Sbjct: 47  EDQINTISGIKQITSRSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAPVIAQFRDEIDTPI 106

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
           +         I+      +       + S  + ++ + Q+                 Q+ 
Sbjct: 107 VQRYDPSSSPIMSVVFESNS--MSLAQLSSYVDKKIVPQLKTVSGVGNVNLLGDAKRQIR 164

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
            +  P +L+       ++       N          +        Q  V           
Sbjct: 165 IKVHPEQLQSYGIGIDQVINTLKNENIEVPAGTLQQKNSELVVQIQSKV----------- 213

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPS 314
                           D+          F      +    A +                 
Sbjct: 214 ---------IHPLGFGDLVIANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDIL 264

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
             +  +    ++        L+A         V   +      S      T    A L +
Sbjct: 265 KSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGAVLAV 324

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +++ + +   +  ++   ++ + ++ TL  +   G ++ + ++  + L IGL +D  I+V
Sbjct: 325 LIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVV 384

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAIT 491
            E I       +    +   G       +  + +T +   + + F G   G     F +T
Sbjct: 385 RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVT 444

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM-------- 543
           +  ++LISMF + ++   +        K K   +     +                    
Sbjct: 445 VSTAVLISMFISFTLDPMLSAHWKDPVKKKESRLQRFFNYISNLLDGLTHIYEKLLKLAL 504

Query: 544 RARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           R RF  V I  +   +                 KG I++         L   ++ L  + 
Sbjct: 505 RFRFITVIIAIVSLVVALGLSKMIGTEFVPTPDKGEIRIQFETPVDSSLEYTQAKLHQVD 564

Query: 603 IGDISFQNFDGEKNFL 618
                F +       +
Sbjct: 565 QIIRQFPDVVSTYGVV 580



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 8/218 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +             +  + ++K   ++      +        I   +       +  +
Sbjct: 261 VDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGA 320

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG  ++D
Sbjct: 321 VLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDD 380

Query: 737 KVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+  +T               E     + T++      LP+A  GG +  
Sbjct: 381 AIVV----RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGR 436

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F + ++  ++++   S  +   +     D   K 
Sbjct: 437 FFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKK 474



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669 GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 840 ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 899

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 900 MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 956

Query: 788 VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 957 LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 999


>gi|209693713|ref|YP_002261641.1| putative integral membrane component of multidrug efflux system
           [Aliivibrio salmonicida LFI1238]
 gi|208007664|emb|CAQ77774.1| putative integral membrane component of multidrug efflux system
           [Aliivibrio salmonicida LFI1238]
          Length = 1022

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 65/541 (12%), Positives = 159/541 (29%), Gaps = 39/541 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +G+         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGIQAIF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               Q+ IT++   +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSQSVMGQSTITVTMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELASS--QITDYLERVVNPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I   L    +P+R+  +  T   +       N           F+  +     
Sbjct: 173 KIDLYGGIRYALRIWLEPARMAAVNMTATDVMSVLNANNFQSAAGQATGEFVLYNGSANT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                      +                 +    +  +   
Sbjct: 233 QVSNVEELE--------------------RLVIKTDDGEVVRLSDIAKVSLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +          L   L           +   +  A   S   
Sbjct: 273 SANGKEAVVTAINAAPSANPINIAADVLKLLPQLEKNLPTNIKMNIMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VLIV+ + +   +  ++   +I L+++    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAAVIVLIVITLFLGSFRAVIIPIVTIPLSLVGVAMVMQVMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  ++ F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHVKLGETPFRAAIIGTREIAIPVIAMTLTLGAVYAPIAMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  S+ +S   A+++   M   +++  ++ S   + +  F       
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEVPSKFESTVHHFLDGMTNK 512

Query: 539 A 539
            
Sbjct: 513 Y 513



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 84/243 (34%), Gaps = 9/243 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V LS +                   E            + +     +  + 
Sbjct: 244 VIKTDDGEVVRLSDIAKVSLEKSHDIYRASANGKEAVVTAINAAPSANPINIAADVLKLL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++ + +P +   N          E I + I  ++ +A+ +LI I +    +   +  I 
Sbjct: 304 PQLEKNLPTNIKMNIMYDSTIAINESIHEVIKTIVEAAVIVLIVITLFLGSFRAVIIPIV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISF 757
           T+ L +        + G  +NL  + A++  IG  V+D +VV     +N+  +     + 
Sbjct: 364 TIPLSLVGVAMVMQVMGFSWNLMTLLAMVLAIGLVVDDAIVVL----ENVDRHVKLGETP 419

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                    E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ 
Sbjct: 420 FRAAIIGTREIAIPVIAMTLTLGAVYAPIAMMGGITGSLFKEFALTLAGSVFVSGIVALT 479

Query: 815 IAA 817
           ++ 
Sbjct: 480 LSP 482



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 66/177 (37%), Gaps = 7/177 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             N + +G           +     ++   + + + I+F+     L  + ++ L I   L 
Sbjct: 830  YNHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESIRDPLVIMVSVPLAICGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++       +    + + ++    L
Sbjct: 890  ALAWGAATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHNLKNR--VEAVTEAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               + T+ A    ++P+      G +   S  I +  G+ +    ++F+   I  ++
Sbjct: 948  RPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYSYL 1004


>gi|161525275|ref|YP_001580287.1| acriflavin resistance protein [Burkholderia multivorans ATCC 17616]
 gi|189349987|ref|YP_001945615.1| RND superfamily multidrug transport protein [Burkholderia
           multivorans ATCC 17616]
 gi|160342704|gb|ABX15790.1| acriflavin resistance protein [Burkholderia multivorans ATCC 17616]
 gi|189334009|dbj|BAG43079.1| RND superfamily multidrug transport protein [Burkholderia
           multivorans ATCC 17616]
          Length = 1037

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 84/679 (12%), Positives = 189/679 (27%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAVTSKTLPLTQVQDLTDTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKNGRPVMLTDVAKVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +          +   +   T++        L+          +          +    
Sbjct: 275 VNSEPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELMLSVVLVVLVMYLFLANIYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHSPPPESHRFEARVHRTIDWVIA 514

Query: 540 -------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +  ++ ++  +F     +     G IQ    A + V   
Sbjct: 515 RYAVALEWVLNRQRATLVVALLTLALTALLYVFVPKGFFPAQDTGVIQAITQAPQSVSYG 574

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    ++L    +   N D   +F+         +  +  +    + + +E        
Sbjct: 575 AMAERQQTLASEILKDPNVDSLTSFIGVDGSNITLNSGRMLINLKPRDERSETAAQIIRD 634

Query: 653 NTEIVGPKISRELIRKGIV 671
             + V       L  + + 
Sbjct: 635 LQQRVANVTGISLFMQSVQ 653



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            Y  +    ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +
Sbjct: 356 IYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTIATGFVVDDAIVMIENI---AR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                 S  +   K   +     +  +++    ++P+   G   G +   FAI +A  IV
Sbjct: 413 YVEEGDSGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIV 472

Query: 807 VAASSSIFIAA 817
           ++A  S+ +  
Sbjct: 473 ISAIVSLTLVP 483



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|83749744|ref|ZP_00946721.1| Acriflavin resistance plasma membrane protein [Ralstonia
           solanacearum UW551]
 gi|207743897|ref|YP_002260289.1| transporter protein [Ralstonia solanacearum IPO1609]
 gi|83723596|gb|EAP70797.1| Acriflavin resistance plasma membrane protein [Ralstonia
           solanacearum UW551]
 gi|206595297|emb|CAQ62224.1| transporter protein [Ralstonia solanacearum IPO1609]
          Length = 1033

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 83/699 (11%), Positives = 199/699 (28%), Gaps = 43/699 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           RN    ++L+ ++   G+         Q  +   P           LDL   +  + +  
Sbjct: 9   RNPVPAILLFILLTLAGMY-----GFRQLPIANLPD----------LDLPSVTIALTQPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    +   + L        S+   Q  ITL F   +   +        + 
Sbjct: 54  AAPAQLETEVARKVENSLATLSGVKHMRTSITDGQVNITLEFILEKKLSDALIDTKDAVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S L  D ++  +        + +L      ++   A   S  +       +      
Sbjct: 114 RIRSDLPTDLQQPSISAVRVGGEATLLYAIASSRMDEEA--LSWFVDDTVSKTVLGVPGI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      +  Q+  E DP RL  +  T A +S           G    +     +    
Sbjct: 172 GKFERVGGVQRQVRVEVDPVRLAAMGATAADVSRALRTVEQESSGGRGQLGGTEQAVRTI 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V    E++ + L  +            V  +  E       +       K        
Sbjct: 232 ATVRQAEELNHLPLVLSDGRRVNVDQVATVSDAVAERSQIALLDGEPAVGFKLYRAKGFD 291

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +  A  + QA+   +A   G                              V        
Sbjct: 292 EMRIAADVTQALGKLQAADPGL---------------------SFTKISGTVDYTREQFD 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L ++V++  +   +  L++  ++ L+++   A +  +G +L   ++  +
Sbjct: 331 GSMHMLYEGALLAVLVVWWFLRDWRATLISASALPLSILPAFAAMYWIGYSLNTVTLLAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G+ VD  I+  E I   +R  + +  +     +     +  + +T ++  +     
Sbjct: 391 AVIVGILVDDAIVEIENIERHSRMGKPIKQAAGEAVTEIALAVIATTMTLVVVFMPTAMM 450

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      + F  T  +++L S+  A  +   +  ++++    ++   +       +   
Sbjct: 451 SGIPGLFFKQFGWTAVVAVLSSLLVARVLTPMLAAYLLKAHPGETEAKDGRLMVLYLGWV 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                 R       ++I F   +I  L           +G   + +       L+  R+ 
Sbjct: 511 RWCLAHRWLTLLAAVAIFFGSVAIVPL-LKTGLIPPSDRGYSTVRIELPPGSTLNATRAT 569

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            E+ +      +  +     +   Q   G       V       +         Q     
Sbjct: 570 TEAARQAIGGLKGVEHVMTMVGAAQAVGGGQTQAGEVRRATMTLVLAPRGARLDQAAIET 629

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
             + +   +      + +  +   I + +      AL A
Sbjct: 630 QVRRALVNVPGARFSLGVGGLGEKISLILASDDTAALKA 668



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 83/265 (31%), Gaps = 11/265 (4%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
             + L +   R V++  V +  +++                    + +  D +     + 
Sbjct: 241 NHLPLVLSDGRRVNVDQVATVSDAVAERSQIALLDGEPAVGFKLYRAKGFDEMRIAADVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               K+    P  +             +      +    + +A+L+  W    W   L +
Sbjct: 301 QALGKLQAADPGLSFTKISGTVDYTREQFDGSMHMLYEGALLAVLVVWWFLRDWRATLIS 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            + L L I          G   N   + A+  ++G  V+D +V  + +    +       
Sbjct: 361 ASALPLSILPAFAAMYWIGYSLNTVTLLALAVIVGILVDDAIVEIENI---ERHSRMGKP 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            +    +++ E     + T+M   +  +P A+  G        F       ++ +   + 
Sbjct: 418 IKQAAGEAVTEIALAVIATTMTLVVVFMPTAMMSGIPGLFFKQFGWTAVVAVLSSLLVAR 477

Query: 814 FIAAPILLFI-----YDWRAKNARI 833
            +   +  ++      +  AK+ R+
Sbjct: 478 VLTPMLAAYLLKAHPGETEAKDGRL 502



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 67/163 (41%), Gaps = 6/163 (3%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++I  + +   + + F  ++  L  ++ + L +        L     ++ ++  ++ L
Sbjct: 848  MAIVIGLLCVFCVLVLLFHDFFQPLTILSAVPLSLGGAFVALLLSKGMLSIPSMIGLVML 907

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +     M ++   +S  + +  + ++     V T++A    +LP+A+ 
Sbjct: 908  MGIVTKNSILLVE--HAVMGIHERGLSMHEALIDACHKRARPIVMTTVAMIAGMLPIALG 965

Query: 789  WGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G         AI +  G+V +   S+ +      F+     +
Sbjct: 966  LGADASFRQPMAIAVIGGLVTSTGLSLLVVPVAFTFVDGLERR 1008


>gi|237720504|ref|ZP_04550985.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450255|gb|EEO56046.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 1143

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 72/527 (13%), Positives = 146/527 (27%), Gaps = 44/527 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +         +I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSTASNTGSGEISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLVVFSLYDETDTYSESFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q       +S      N       FG    R + 
Sbjct: 171 PGVGDANVLG-QDYSMRIWLRPDVMAQYKLVPGDVSAALAEQNVEAAPGQFGE---RSNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPDGEVLRLKDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               +          
Sbjct: 274 NFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKLNISMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFILSLVGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   V 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMAVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   R F +TM ++I +S   A+++  A+   +++  K 
Sbjct: 454 VSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHKK 500



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 61/200 (30%), Gaps = 23/200 (11%)

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDI 704
               E+ G             G+I     + +Y+ +      +   L  + +    L+   
Sbjct: 926  YTYELGGMAREEAQSSGSATGLIFVLCFVFVYLLLSAQYESYILPLAVLLSVPFGLLGSF 985

Query: 705  TKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                G  A+  I      +           A++ L+G    + +++ +     +      
Sbjct: 986  LFVNGVSAIGNISALKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA---LDRRKMG 1042

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAFGIVVAASS 811
            +S            L   + TS+A  + +LP+   +G       +       G+++    
Sbjct: 1043 MSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIGGMLIGMIC 1102

Query: 812  SIFIAAPILLFIYDWRAKNA 831
             IFI   + +     + K  
Sbjct: 1103 QIFIVPVLFVIFQYLQEKVK 1122



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          + + +    +    +  Q    ++      +E +  + ++ +P     
Sbjct: 262 DIAEIQLDRLGYNFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKL 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + +  +I + I + I ++I        L     + + +  T    
Sbjct: 322 NISMNANDFLFASIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFIL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +    TS     +   ++NE  G 
Sbjct: 382 SLVGFSLNLLTLCALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASI--DAMNELGGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V  ++      +P++  GG+       F + MA  I ++A +++ ++  +   +     
Sbjct: 440 IVSITLVMMAVFVPVSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHK 499

Query: 829 K 829
           K
Sbjct: 500 K 500


>gi|221214022|ref|ZP_03586995.1| multidrug resistance protein MdtB [Burkholderia multivorans CGD1]
 gi|221166199|gb|EED98672.1| multidrug resistance protein MdtB [Burkholderia multivorans CGD1]
          Length = 1037

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 84/679 (12%), Positives = 189/679 (27%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAVTSKTLPLTQVQDLTDTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKNGRPVMLTDVAKVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +          +   +   T++        L+          +          +    
Sbjct: 275 VNSEPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELMLSVVLVVLVMYLFLANIYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHSPPPESHRFEARVHRTIDWVIA 514

Query: 540 -------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +  ++ ++  +F     +     G IQ    A + V   
Sbjct: 515 RYAVALEWVLNRQRATLVVALLTLALTALLYVFVPKGFFPAQDTGVIQAITQAPQSVSYG 574

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    ++L    +   N D   +F+         +  +  +    + + +E        
Sbjct: 575 AMAERQQTLATEILKDPNVDSLTSFIGVDGSNITLNSGRMLINLKPRDERSETAAQIIRD 634

Query: 653 NTEIVGPKISRELIRKGIV 671
             + V       L  + + 
Sbjct: 635 LQQRVANVTGISLFMQSVQ 653



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            Y  +    ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +
Sbjct: 356 IYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTIATGFVVDDAIVMIENI---AR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                 S  +   K   +     +  +++    ++P+   G   G +   FAI +A  IV
Sbjct: 413 YVEEGDSGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIV 472

Query: 807 VAASSSIFIAA 817
           ++A  S+ +  
Sbjct: 473 ISAIVSLTLVP 483



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|161613187|ref|YP_001587152.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|189081609|sp|A9N7L1|MDTC_SALPB RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|161362551|gb|ABX66319.1| hypothetical protein SPAB_00896 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1026

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQQRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 92/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSDGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|332665643|ref|YP_004448431.1| acriflavin resistance protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334457|gb|AEE51558.1| acriflavin resistance protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 1057

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 61/513 (11%), Positives = 147/513 (28%), Gaps = 40/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++ ++++  +GL+            +  P       +            +    
Sbjct: 9   KRPSLIIVFFAVMTFLGLVS-----YSYLSYELIPKFNAPIVL---------VSTIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   L    ++  S ++K      +  +  + + + F D    +     V   +  
Sbjct: 55  SPSEVENSLTKPIEDAISGVEKIVSIRSTSFEGLSTVIVEFKDGINTDVALQDVQRKINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D K   L   +  +  I+    N +       +Q   I ++    +   +   
Sbjct: 115 VKSTLPEDAKDPALGKFSSDDFPIMSIAVNTNLPQ---AQQYDLIKQRIKPALSQVDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++  + +  +L     +   +                          N  
Sbjct: 172 QVNLIGGQEREIKVQINRQKLESQGLSLLNLVMAIQS-------------------ANLE 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               KV+     +    A                              +   L  ++D  
Sbjct: 213 FPTGKVKSENEQITVRLAGKFLSLEDIKDVTVGVSNSGTLIKVRDVAEVSDDLKEMVDLS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE-ERNVGADLGSDS 360
            L +          +   +     +      A L        L       +      +  
Sbjct: 273 RLNSKSAIGITVLKQPDANAVTMSDGIKAKIASLEESFKKENLKFNIANDSTDFTRDAVD 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +V+ + +   +  L+   +I  +++ T   + L+G TL L ++  +
Sbjct: 333 AVMHDIGLAIILVALVMLVFLHSLRNSLIVMVAIPASLVSTFIGMYLMGFTLNLMTLLAM 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IG+ VD +I+V E I       ++   +   G +    T     +  ++    +   
Sbjct: 393 SLVIGILVDDSIVVLENIYRHLEMGKNRRQAAADGRNEIGFTALAITLVDVVVFFPITLA 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAM 510
           G   G  +  FA  +  S L+S+  + ++   +
Sbjct: 453 GGIVGNIMGQFAWVVVFSTLMSLLVSFTVTPML 485



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 88/261 (33%), Gaps = 15/261 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V  +    L  VR   E                   + +            + + +K 
Sbjct: 242 VTVGVSNSGTLIKVRDVAEVSDDLKEMVDLSRLNSKSAIGITVLKQPDANAVTMSDGIKA 301

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGV----IISAIAMLIYIW-IRFKWYFALG 695
           KI  +      +N +      S +  R  +  V     ++ I + + +         +L 
Sbjct: 302 KIASLEESFKKENLKFNIANDSTDFTRDAVDAVMHDIGLAIILVALVMLVFLHSLRNSLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  +   +  T     L G   NL  + A+  +IG  V+D +VV + +    +      
Sbjct: 362 VMVAIPASLVSTFIGMYLMGFTLNLMTLLAMSLVIGILVDDSIVVLENI---YRHLEMGK 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSS 812
           + R       NE    ++  ++   +   P+ + G   G+++G FA      +V +   S
Sbjct: 419 NRRQAAADGRNEIGFTALAITLVDVVVFFPITLAGGIVGNIMGQFAWV----VVFSTLMS 474

Query: 813 IFIAAPILLFIYDWRAKNARI 833
           + ++  +   +    AK  ++
Sbjct: 475 LLVSFTVTPMLASRVAKVTKL 495



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 60/148 (40%), Gaps = 6/148 (4%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            LI + +   W + L  + ++ + +   L   AL     ++ A+  ++ LIG    + +++
Sbjct: 879  LIMVALYDNWIYPLVVMFSIPVAMVGALLAMALTMQTLDIFAMLGMIMLIGLVAKNAILL 938

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             D      ++      +++ +  +    L   + T++A    +LP+A+    G     + 
Sbjct: 939  VDFAN---QMKAEGHHYKEALILAGRTRLRPILMTTIAMVAGMLPIALAKGAGAEWKNAL 995

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYD 825
            A  +  G+  +   ++ +   +   +  
Sbjct: 996  AWALVGGLTSSMLLTLVVIPAVYAIVDR 1023


>gi|319405190|emb|CBI78795.1| AcrB/AcrD/AcrF multidrug efflux protein [Bartonella sp. AR 15-3]
          Length = 1044

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 60/516 (11%), Positives = 146/516 (28%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++ +MI   G   A  N      +   P                         
Sbjct: 25  RRPVFTFVVNAMIIIAG-FSAWMNV----DVRELPDVDTPVTT---------IMTTFSGA 70

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  + +        +    ++++ +SF         A  +   +  
Sbjct: 71  SAETIDREITKVIEDAVARVSGIKTISSTSSFGRSRVEISFNVGVDLNVAASDIRDAISR 130

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D    L++       +++        +     + +  +  Q +D++   +   
Sbjct: 131 VTYSLPKDADAPLIIKADSNAAAMMYLVVTSPTMNID--DLATIVNDQIVDKLSAVDGVG 188

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                +        + D ++L     T   ++                            
Sbjct: 189 DVQVDNARTKIFQIDVDQAKLASYGLTVGDIARVLADMTTDAPVGSLRNSIQTLIVRATA 248

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +        + L                                  ++     V     
Sbjct: 249 RLTTPEAFEQVILKPH------------------------VRLGDVAHVTLFPDVETVIL 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            KAQ +     +        L+    P     +   +      +   
Sbjct: 285 RVNGKTGIGIGIVRKAQSNTLNISKGIRAALEQLKIVLPPSVHMSILSDDAIFINSALHE 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I    V++V+F+ +   +  L+   SI + +I T+A + ++G +L + +  G+V
Sbjct: 345 VEIALVIAVLSVILVIFLFLRDIRATLIPILSIPVTLIGTIAAIYVVGFSLNILTFLGLV 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G    +  +  + +T +   V + F  
Sbjct: 405 LATGLVVDDAIVVLENIVRWRNTGLGSRSAAVVGTQEVFFAVLATTLTLVAVFVPISFLP 464

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      + F   + +SIL+S   A+++   +    
Sbjct: 465 GQVGGLFKEFGFVLAISILLSSVVALTLCPMLASRF 500



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/242 (11%), Positives = 89/242 (36%), Gaps = 7/242 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+    V L  V        +  +  +        +  ++    +++  ++ +    ++
Sbjct: 258 QVILKPHVRLGDVAHVTLFPDVETVILRVNGKTGIGIGIVRKAQSNTLNISKGIRAALEQ 317

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTL 700
           +  ++P S   +            + +  + ++I+ +++++ I          L  I ++
Sbjct: 318 LKIVLPPSVHMSILSDDAIFINSALHEVEIALVIAVLSVILVIFLFLRDIRATLIPILSI 377

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    + G   N+     ++   G  V+D +VV + +   ++   T +  R  
Sbjct: 378 PVTLIGTIAAIYVVGFSLNILTFLGLVLATGLVVDDAIVVLENI---VRWRNTGLGSRSA 434

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
                 E     + T++      +P++   G V      F   +A  I++++  ++ +  
Sbjct: 435 AVVGTQEVFFAVLATTLTLVAVFVPISFLPGQVGGLFKEFGFVLAISILLSSVVALTLCP 494

Query: 818 PI 819
            +
Sbjct: 495 ML 496



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 68/166 (40%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   I+ + +L+ +  +F+ +      I T+ L +   +      G+  N+ +   ++ 
Sbjct: 868  MIVFGIAFVIILLVLAAQFESFVSGFIIIATVPLGLGCAVIAMLFSGVSLNIYSQIGLIL 927

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G    + +++ +      +L     S R+ I+ + N  L     T + A +  +P+ +
Sbjct: 928  LVGVMAKNGILIVEFA---DQLRDQGKSVREAIEDAANIRLRPVCMTMICAILGGIPLVL 984

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                G     +    +  G+ +A   ++F+   + L +  +    A
Sbjct: 985  AKGAGAEARIALGWVIVGGLGLATIFTLFVTPVVYLLLGRFVQPKA 1030


>gi|307609515|emb|CBW99013.1| hypothetical protein LPW_07981 [Legionella pneumophila 130b]
          Length = 863

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 69/517 (13%), Positives = 164/517 (31%), Gaps = 41/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN-RISLGLDLRGGSHLVLEV 60
           +     +++  +I   G+     N + +  + ++P        I  G             
Sbjct: 9   KRPVLSIVVSMLIFLFGI-----NSIYKMQIRQYPKMENTVITIMTG----------YPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            + + + GF+    +   +  +       S +Q  + ITL+   +   +     V   +Q
Sbjct: 54  ADAELIAGFITTPLESAVASAEGIDYMTSSSQQGLSTITLNIKLNFDPQIAFTDVMSKVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L  + ++ +++  ++   +++    +   +     + +    R    Q+   +  
Sbjct: 114 QTLNQLPKESQQPVILKKSDSSTALMYISLDSKDMTPQ--QITDYATRVVQPQLQTVDGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP ++  L  T A +S      N           ++  +   +
Sbjct: 172 AKADILGGQTYSMRIFMDPIKMAALNVTPADVSSVLASNNFLTAAGSTKSEYVAINVTAK 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + +  E                       +                 +          
Sbjct: 232 TDLNNVGEFE--------------------RLIVKSDKGSIIRLRDIAKVELGSQNYDSS 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
               +        +     +    I  A  L   +     P     +          S  
Sbjct: 272 VTFNSKKAVFISITPTPTANPLTVINDARKLFPSIVREFPPSLTGTIVYDATAFIRASIH 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A +V+IV+F+ +   +  L+   +I L+++    L+ +LG ++ L ++   
Sbjct: 332 EVMETIIEAAVIVIIVIFLFLGSVRSVLIPVVTIPLSLVGVCTLMLILGYSINLLTLLAF 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     + ++ F S  +G     + +    IT       + F 
Sbjct: 392 VLAIGLVVDDAIVVVENVHRHLEEGKTPFESAIIGAREIATPVIAMTITLAAVYAPIGFM 451

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               G   + FA T+  +++IS   A+++   M   I
Sbjct: 452 SGLTGALFKEFAFTLASAVIISGVIALTLSPMMCSKI 488



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L  + T+ L +        + G   NL  + A +  IG  V+D +VV + +
Sbjct: 350 LFLGSVRSVLIPVVTIPLSLVGVCTLMLILGYSINLLTLLAFVLAIGLVVDDAIVVVENV 409

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +       E     +  ++       P+       G++   FA  +
Sbjct: 410 H---RHLEEGKTPFESAIIGAREIATPVIAMTITLAAVYAPIGFMSGLTGALFKEFAFTL 466

Query: 802 AFGIVVAASSSIFIAA 817
           A  ++++   ++ ++ 
Sbjct: 467 ASAVIISGVIALTLSP 482


>gi|302188116|ref|ZP_07264789.1| acriflavin resistance protein [Pseudomonas syringae pv. syringae
           642]
          Length = 1010

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 59/538 (10%), Positives = 153/538 (28%), Gaps = 40/538 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L+ M+   G+L        +  +  FP       +             LE  
Sbjct: 9   RYPVPAVMLFLMLTLFGVL-----GFERLGIQDFPDTDLPAVV---------ISASLEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + L+        + +    I + F   +      ++V   +  
Sbjct: 55  APEQLETEVARKLEDKLTSLRLLKHVTTQIAEGSVIINVIFDIDKDGNEALNEVRNAVDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L        +   T     ++    +  ++   A   S  +  +   Q+       
Sbjct: 115 AAAELPASLDTPSVTRLTTNTTPLLTYVVDAPRMDEEA--LSWFVDNELSKQLLTVRGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++  + DP+ +  L  +   ++           G    +   + +     
Sbjct: 173 KISRVGGVDREVQVDLDPALMAGLGLSVTDIADRLRAMQKDNSGGQGDLGSGQQALRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D   +  I +                         R         +    A      
Sbjct: 233 GIDDPAALGAIRIPV--------------------SDGRMLAVQQLATVRDTHAERTTLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S            +        + +       V   + +   
Sbjct: 273 YRDGKPVIGFQVIRSLGFSDVGVTRDLRQAVSEFARQHPDVHIEEAS-NAVEPVMENYRG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L ++V++  +   +  L+   ++ L++I T  ++   G +L   S+  + 
Sbjct: 332 SMALLYEGMLLAVLVVWWFLRDWRATLIVATALPLSIIPTFGVMYFAGFSLNTVSLLALA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I    R  ++   +           +  + +T +   +   F G
Sbjct: 392 LVIGILVDDAIVEVENIARHLRMGKTPRQAAIEASDEIGLAVLATTVTLVAVFLPTAFMG 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           G +    R F +T   +++ S+  A  +   M    ++ +     D   + R+     
Sbjct: 452 GVSGKLFRQFGVTASAALMFSLLVARLLTPMMAAHFLKARSHGEQDSGLMRRYLSWIH 509



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 80/254 (31%), Gaps = 6/254 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I++ V   R + +  + +  ++                    ++      V  TR L 
Sbjct: 241 GAIRIPVSDGRMLAVQQLATVRDTHAERTTLAYRDGKPVIGFQVIRSLGFSDVGVTRDLR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +     P   I+        +         +      +A+L+  W    W   L  
Sbjct: 301 QAVSEFARQHPDVHIEEASNAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATLIV 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L I  T G     G   N  ++ A+  +IG  V+D +V  + +    +      +
Sbjct: 361 ATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENI---ARHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            R    ++ +E     + T++      LP A  GG        F +  +  ++ +   + 
Sbjct: 418 PRQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGVSGKLFRQFGVTASAALMFSLLVAR 477

Query: 814 FIAAPILLFIYDWR 827
            +   +       R
Sbjct: 478 LLTPMMAAHFLKAR 491



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +      V+E  ++        + ++  E    ++  EL     + + 
Sbjct: 785  DRLRNITLSIELNGSNLGEVMEQARQLPVMQNLPAQVKLVEQGELQLMSELFGNFSLAMA 844

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +    +   + + F  +   L  ++ L L +   L    + G+ F++ +V  +L L+G  
Sbjct: 845  VGVFCIYAVLVLLFHDFMQPLTILSALPLSLGGALLALLIGGMSFSMASVIGLLMLMGIV 904

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGS 792
              + +++ +     M     ++S  + +  + ++     + T++A    +LP A+ WGG 
Sbjct: 905  TKNSILLVE--YAIMARRAPTVSRYEALIDACHKRARPILMTTIAMGAGMLPTALGWGGE 962

Query: 793  V--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                   A+ +  G++ +   S+ +   I  ++ D      +
Sbjct: 963  SGFRQPMAVVVIGGLLASTVLSLLVVPVIFTYVDDGHETLKK 1004


>gi|221201419|ref|ZP_03574458.1| multidrug resistance protein MdtB [Burkholderia multivorans CGD2M]
 gi|221208025|ref|ZP_03581031.1| multidrug resistance protein MdtB [Burkholderia multivorans CGD2]
 gi|221172210|gb|EEE04651.1| multidrug resistance protein MdtB [Burkholderia multivorans CGD2]
 gi|221178687|gb|EEE11095.1| multidrug resistance protein MdtB [Burkholderia multivorans CGD2M]
          Length = 1037

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 84/679 (12%), Positives = 189/679 (27%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAVTSKTLPLTQVQDLTDTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKNGRPVMLTDVAKVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +          +   +   T++        L+          +          +    
Sbjct: 275 VNSEPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELMLSVVLVVLVMYLFLANIYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHSPPPESHRFEARVHRTIDWVIA 514

Query: 540 -------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +  ++ ++  +F     +     G IQ    A + V   
Sbjct: 515 RYAVALEWVLNRQRATLVVALLTLALTALLYVFVPKGFFPAQDTGVIQAITQAPQSVSYG 574

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    ++L    +   N D   +F+         +  +  +    + + +E        
Sbjct: 575 AMAERQQTLATEILKDPNVDSLTSFIGVDGSNITLNSGRMLINLKPRDERSETAAQIIRD 634

Query: 653 NTEIVGPKISRELIRKGIV 671
             + V       L  + + 
Sbjct: 635 LQQRVANVTGISLFMQSVQ 653



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            Y  +    ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +
Sbjct: 356 IYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTIATGFVVDDAIVMIENI---AR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                 S  +   K   +     +  +++    ++P+   G   G +   FAI +A  IV
Sbjct: 413 YVEEGDSGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIV 472

Query: 807 VAASSSIFIAA 817
           ++A  S+ +  
Sbjct: 473 ISAIVSLTLVP 483



 Score = 41.2 bits (94), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|317153803|ref|YP_004121851.1| acriflavin resistance protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944054|gb|ADU63105.1| acriflavin resistance protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1021

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/590 (11%), Positives = 154/590 (26%), Gaps = 42/590 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +    +   G++  L   +       FP+                    +   
Sbjct: 9   RRPVMTALTMLGLLFFGIVSYLNMPVSYLPAVEFPTIQ--------------VTASMSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S +                ITL F  +R  +  A  V   +  
Sbjct: 55  NPTTMAASVASPLEREFSSIAGLQSMSSVNSLGSTTITLQFDLNREIDGAALDVQSAIAR 114

Query: 122 VNSKLNVDP-KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             S L     +          +  I+      D +    +  +          I +    
Sbjct: 115 AASDLPDQITEDPSFQKVNPADTPILYLSVRSDTLPMSTV--NDYSKTFLTQTISMIPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q L        +    DP  L        ++       N +                + 
Sbjct: 173 AQVLIYGEKQYAVRIRLDPRELAARSLGIDEVKTAVEQANVNLPLGTLEGTEQSLMIQDN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +                           DI       +         +   +      
Sbjct: 233 GQLTSA--------------------DQYADIIAAYRDGQPVRLSDIALVEDGVKDERFS 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +    +++       + +         +   N      S +
Sbjct: 273 SWLNDDHSLTIAVKRQPGTNTIDIVDSIRQKLPWITSQMPAGIKLDIVHDNSKFIEESVN 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +   LV++V+F+ +       +A  +I  +++ T A++  +  TL   S+  +
Sbjct: 333 DVKFTLGLAVALVILVVFIFLRNLASTFIASVAIPFSIVATFAVMHAMDFTLDTFSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I++ E I       ++   +   G S    TI    ++  I  V + F 
Sbjct: 393 TLCVGFVVDDAIVMIENIIRHLEMGKTPMQAARDGSSEIGFTIISMTLSLAIVFVPIMFM 452

Query: 481 GGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G        FA+T+  +IL+S   ++S+   +   ++  K    I  +      L+   
Sbjct: 453 AGIIGRVLHEFAMTITAAILVSGVVSLSLTPMLGSRML--KSKSRIAESDPVFDRLMSWY 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +   +  R     +     + +        +  G        L +   +
Sbjct: 511 RSSLSLCLRHRAATMVASALLFAATAAAFMVIPKGFLPSDDQGLIMGFTQ 560



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/214 (11%), Positives = 80/214 (37%), Gaps = 12/214 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-----K 668
             +  + +  +         +++ +++K+  I           +    S+ +       K
Sbjct: 276 NDDHSLTIAVKRQPGTNTIDIVDSIRQKLPWITSQMPAGIKLDIVHDNSKFIEESVNDVK 335

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             +G+ ++ + ++++I++R        A   +   I  T           +  ++ A+  
Sbjct: 336 FTLGLAVALVILVVFIFLR-NLASTFIASVAIPFSIVATFAVMHAMDFTLDTFSLMALTL 394

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G+ V+D +V+ + +   ++      +         +E     +  +++  I  +P+  
Sbjct: 395 CVGFVVDDAIVMIENI---IRHLEMGKTPMQAARDGSSEIGFTIISMTLSLAIVFVPIMF 451

Query: 789 WG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
                G V+  FA+ +   I+V+   S+ +   +
Sbjct: 452 MAGIIGRVLHEFAMTITAAILVSGVVSLSLTPML 485



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/160 (15%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++    + IYI +      +   L  ++ L       L    LFG + +L  +  ++ LI
Sbjct: 848  LLFIAIVAIYILLGCLYESFIHPLTILSGLPSAAFGGLITLMLFGYDLDLYGMVGIIMLI 907

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + ++V D     ++   T ++  +   +         + T++AA +  LP+A+  
Sbjct: 908  GIVKKNSIMVVDFA---IQAEKTGLTPEEAAFQGATTRFRPILMTTLAAIMGALPIALGF 964

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              G  +     + +  G+  +   ++++      ++ +++
Sbjct: 965  GAGAEIRRPLGLAVVGGLAFSQIVTLYLTPIFYTYMDEFQ 1004


>gi|126654763|ref|ZP_01726297.1| cation or drug efflux system protein [Cyanothece sp. CCY0110]
 gi|126623498|gb|EAZ94202.1| cation or drug efflux system protein [Cyanothece sp. CCY0110]
          Length = 1074

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 70/546 (12%), Positives = 148/546 (27%), Gaps = 39/546 (7%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ-MYSDELRSFLKKEG--- 85
             LD+ P   PK              + +  +         +   +  L   +       
Sbjct: 4   LPLDKLPEIAPKK-------------VAVTANYIGADAKTTEDNVTAVLEREINGTEQVR 50

Query: 86  -IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            I  F+       I ++F     +      V   +    S L     +  + T T+    
Sbjct: 51  WIDSFTDNTGNVSINVTFPTEMDRNTAQVLVQNRVSQAQSTLPSVVNQAGVRTNTQSPSL 110

Query: 145 IVLSQNNIDQVIS-----HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
            ++     +                 + R   +++                  +    DP
Sbjct: 111 TLVYGFYAENGPDGQPLYDKTFIYNYVDRYISNEMKGLPGVGSVGLFGGANYAMRIWLDP 170

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
            +L     T   +       N        G +        +  +  +             
Sbjct: 171 DKLAARGLTALDVVAVINEQNFDVGVGRIGQQPAPPEQQFELPLRIQGR----------- 219

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
                  +    +                     +        +        +       
Sbjct: 220 --FQTVAEAEDLVVKVGNDGTLIRIGDVGYAELGMENYDTVVNVDGFTGVAFLIYQLPGS 277

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +   T + A    A L     P    ++   N      S +    T      LV++V+F+
Sbjct: 278 NALETADAAKAKMAELEPNFPPGLKVVIGLDNTLFVNASLNDLSITLLQAIALVVLVIFV 337

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
            +   +  ++   +I + ++  +  L+  G +L   S+   VL  GL VD  I++ E + 
Sbjct: 338 FLQDWRTTIIPGIAIPVALVGAMIGLNAFGFSLNQLSLFACVLATGLVVDDGIVIVEAVS 397

Query: 440 EENRKNQSVFCSLDMGFSRAYS-TIFDSNITALIATVVLFFFGGGA--VRGFAITMGLSI 496
            +  +      +        +  TI  S +   +   V FF G      R FA+T+  ++
Sbjct: 398 SKLAQGMRPTQAAMDAMDELFGATISTSVVLMAVFIPVCFFPGTIGIVYRQFALTIIFAV 457

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           L S F A++    M   ++   + K   +  L R+F     I  Q  R     +    + 
Sbjct: 458 LFSTFNALTFSPTMSAILLGPPEDKHGPLAVLFRWFNQGFDIIRQGYRGFINFLTRIRIV 517

Query: 557 SICSIC 562
            +    
Sbjct: 518 IMALFI 523



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 21/203 (10%), Positives = 73/203 (35%), Gaps = 9/203 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    +  ++      + +    +  +       +L    +  + +  + + +++ 
Sbjct: 281 ETADAAKAKMAELEPNFPPGLKVVIGLDNTLFVNASLNDLSITLLQAIALVVLVIFVFLQ 340

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   +     + + +   +     FG   N  ++ A +   G  V+D +V+ + + 
Sbjct: 341 ---DWRTTIIPGIAIPVALVGAMIGLNAFGFSLNQLSLFACVLATGLVVDDGIVIVEAV- 396

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
                    +        +++E  G ++ TS+      +P+  + G+   V   FA+ + 
Sbjct: 397 --SSKLAQGMRPTQAAMDAMDELFGATISTSVVLMAVFIPVCFFPGTIGIVYRQFALTII 454

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
           F ++ +  +++  +  +   +  
Sbjct: 455 FAVLFSTFNALTFSPTMSAILLG 477



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/217 (10%), Positives = 71/217 (32%), Gaps = 26/217 (11%)

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF- 692
             +    + + +         +        +       +   ++ + + + +  +++ Y  
Sbjct: 818  QVIKAMEAVAQETLQPGFGYSWTNTAAEEQSSAGAAPIVFGLAFVMVFLVLAAQYESYID 877

Query: 693  ALGAITTLILDITKTLGFFALFGIEF------------------NLTAVAAVLTLIGYSV 734
                + T+ L I   LG      + F                  N+ A  A++ LIG + 
Sbjct: 878  PTIILLTVPLAILGALG-MIWLRVTFVQTAPFNPGDGIWPVLNNNMYAQVALVMLIGLAA 936

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGG 791
             + +++ +      +     +S       +  + L   + T++++ +   P+      G 
Sbjct: 937  KNAILIVEFAN---QSRDLGMSITQAAINAAEQRLRPILMTAVSSLVGFAPLLAASSVGA 993

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                S    +  G+ +A   S+ +   + + I ++  
Sbjct: 994  VSRWSLGTAIFGGLALATVLSLVLVPILYIVIKNFEK 1030


>gi|296532995|ref|ZP_06895647.1| acriflavin resistance protein [Roseomonas cervicalis ATCC 49957]
 gi|296266683|gb|EFH12656.1| acriflavin resistance protein [Roseomonas cervicalis ATCC 49957]
          Length = 1062

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 79/673 (11%), Positives = 171/673 (25%), Gaps = 43/673 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G          +  +   P                     L    
Sbjct: 24  RPVATTLLAVAVLLWGAF-----GYLRLPVSALPEVDFPTI---------EVSTQLPGAS 69

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   + +              +++TL F   +  +  A  V   L   
Sbjct: 70  PETVALLVTASLERQFAQISGLASMSSVSGPGTSRVTLQFNLDKSLDAAAQDVQAALDAA 129

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L        + +        +++   +          S         ++  +    +
Sbjct: 130 RGTLPSTLPYPPVYSKVNPADPPIIT-FALTSDNLPITRLSDVADTLLAQRLAQAGGVGR 188

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +   +    D  RL         +       N +             S      
Sbjct: 189 VTVQGNMRPAVRLRLDAGRLAAYGIGLEAVRTAIASANQNSPKGSLDGPLQASSIEANDQ 248

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                           DI                     L    +G  
Sbjct: 249 ITAPAAFG--------------------DIILAWRNGAPVRLRDVGQAVDGLENTRNGAW 288

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T+     +   L     P     V          S    
Sbjct: 289 FNGRPAVLIDVQRQPGANIVQTVAQIRGMLPQLEGALPPGAKLTVVSDRTATIRASVHEV 348

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +   LV+ V+++ +  G+  LV   S+ L++I T  ++S +G +L   S+  +V+
Sbjct: 349 QFTLVLSIALVVAVIYLFLGSGRATLVPAVSLPLSIIGTFGVMSAMGYSLDNLSLMALVV 408

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +    +   G  +   TI   +++ +   + L F   
Sbjct: 409 ATGFVVDDAIVMIENIVRLMERGKRPLEAAYEGAQQIAFTIVSLSLSLIAVFIPLLFMEG 468

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLI 534
             G   R FA T+  ++L+S+  ++++   M   +                         
Sbjct: 469 VVGRLFREFAETLTAAVLVSLVVSLTLTPMMCALLLRPHGEHRPNALIRWTEAGFERMRQ 528

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               A+           +    S+     L+       +  +    + + A  P D S  
Sbjct: 529 GYGRALAVALRHETITLLIATASVALTAWLYVVMPKGFLPVQDTGLIRITAEGPQDASFA 588

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R +    Q  ++  Q+   E    V        +    R+   +K + T     + I   
Sbjct: 589 RVSALLQQATEVIRQDPAVESVSTVAGAGTVNATQNAGRLTVALKPRETREDVQAVIARL 648

Query: 655 EIVGPKISRELIR 667
           +     I+     
Sbjct: 649 QPRLDAIAGLATW 661



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 62/159 (38%), Gaps = 8/159 (5%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ +  +IY+         L    +L L I  T G  +  G   +  ++ A++   
Sbjct: 352 LVLSIALVVAVIYL-FLGSGRATLVPAVSLPLSIIGTFGVMSAMGYSLDNLSLMALVVAT 410

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +   ++L        +   +   +     V  S++     +P+    
Sbjct: 411 GFVVDDAIVMIENI---VRLMERGKRPLEAAYEGAQQIAFTIVSLSLSLIAVFIPLLFME 467

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G V      FA  +   ++V+   S+    P++  +   
Sbjct: 468 GVVGRLFREFAETLTAAVLVSLVVSL-TLTPMMCALLLR 505



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/242 (10%), Positives = 86/242 (35%), Gaps = 6/242 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +  +   ++ S+  G          +   V   +     +A    +  ++    E+    
Sbjct: 809  NAEIPLGSIASISRGRAPLLVTRENQFPAVTFSFNLAPGMALGDAVTAIRAAEAELGMPE 868

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK-TL 708
            T               +   +  ++ + + + I + + ++  F    I + +       L
Sbjct: 869  TTAGRFAGDAAEFNRSLEGQVWLILAAIVVIYIVLGVLYESLFHPVTILSTLPSAGIGAL 928

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                L+G++ ++  +  ++ L+G    + +++ D   +        ++  + I ++    
Sbjct: 929  LALELWGLDLSVVGLIGIILLMGIVKKNAIMMIDFALE--AQRDRGMAPHEAIVEACMLR 986

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + T+ AA +  LP+ +    G  +     + +  G++++   ++F    + L +  
Sbjct: 987  FRPIMMTTAAALLGALPLVLQSGTGSELRLPLGVSIVGGLLLSQLVTLFTTPAVYLALER 1046

Query: 826  WR 827
             R
Sbjct: 1047 VR 1048


>gi|327402402|ref|YP_004343240.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Fluviicola taffensis DSM 16823]
 gi|327317910|gb|AEA42402.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Fluviicola taffensis DSM 16823]
          Length = 1050

 Score =  147 bits (371), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 69/554 (12%), Positives = 154/554 (27%), Gaps = 43/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G+L  +        + ++P   P               + +    
Sbjct: 8   KPVLSTVISILIVILGVLGLI-----AIPVSQYPDIAPPT-------------VQVSASY 49

Query: 63  DDFVNGFLQMYSDEL-RSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +           +   E +   +     +    IT+ F      +  A  V  
Sbjct: 50  QGANADVVLNNVVVPLEEQINGVEDMTYMTSTAGNDGTATITVYFKLGTNPDLAAVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L  +  +  +VTT  +  ++++                       I QI   
Sbjct: 110 RVSRATSLLPAEVNRAGVVTTKRQASNLLIFNLYSADSTYDQTFLQNYANINLIPQIKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +          +   +     P  +         ++      N       FG +      
Sbjct: 170 KGVGDATAFGLMDYSMRIWLKPDVMASYGLVPDDVNKALAEQNIEAAPGQFGEQ---GKQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY ++ K  +              +  +    +                 I       
Sbjct: 227 SYQYTIKYKGRL-------------KEDTEFNEIVIRVGEDGEVLRLKDIARIELGAQSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +          +  A  +    IE    +    +A                    
Sbjct: 274 ASSVRVNGKFGLGVAVNQTAGSNAQEVIEGTLAVLDEAKASFPKGVEYTTIVNVNDFLDA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV +V+F+ +   +  L+   S+ + +I T   L+L G ++ L ++
Sbjct: 334 SIEKVFHTLIEAFILVFLVVFLFLQDFRSTLIPAISVPVAIIGTFFFLNLFGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IG+ VD  I+V E +  +  +   S   +           I    +      V 
Sbjct: 394 FALVLAIGIVVDDAIVVVEAVHAKLDEGYKSSKKATIDAMDEITGAIVSITLVMAAVFVP 453

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F  G      + F +T+ ++I++S   A+++  A+   +++  K            F 
Sbjct: 454 VSFIEGSTGVFYKQFGLTLAIAIILSAVNALTLSPALCALLLKPHKDDHGKKKSYMARFN 513

Query: 534 IPDCIAIQFMRARF 547
           I    +   +  R+
Sbjct: 514 IAFNTSFGKLTNRY 527



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/402 (9%), Positives = 109/402 (27%), Gaps = 27/402 (6%)

Query: 452  LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +       ++         +I        G G   GF   +       +    ++ +  +
Sbjct: 640  VKAIIDELFAKTASIKDAKIIFFSPPTIQGFGNTAGFEFQLQDKSGGDINEFNTVAQNFL 699

Query: 512  IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
              + +  ++K    +    F      + +  ++     V   +         ++    N 
Sbjct: 700  GALGQRPEIKYATTSFNPNFPQYQIDVNVPRIKQAGLTVSDVLGVLQGYYGGVYASNFNK 759

Query: 572  -----------------GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                              I     I +   +     +S   +  +      IS  N    
Sbjct: 760  FGKQYRVIYQAEAASRKNIQSLNSIFVRTPSGEMAAVSEFITMKKVYGPQVISRFNLFTA 819

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                           A   + E+  + +           T       ++ L     + ++
Sbjct: 820  IAVNGTPNDGYSSGDAMKAIEEVAAENLPAGYDYEFSGLTREESSGGNQTL----YIFLL 875

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +      +       +   L  + +L + +     F  +F I+ N+     ++ L+G   
Sbjct: 876  VVVFVYFLLSAQYESYILPLSVLFSLPIGLAGVFIFDKIFKIDNNIYTQITIVMLVGLLA 935

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
             + +++ +     +      +S  D         L   + TS A    +LP+ +    G 
Sbjct: 936  KNAILIVE---YALDRRKNGMSIVDAAISGATARLRPILMTSFAFIFGLLPLMLSTGVGA 992

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +   S       G+++     + +   + +     + +   +
Sbjct: 993  AGNTSIGTGAVGGMLIGTLFGVLVIPVLFIVFQSLQERVKPL 1034



 Score = 44.7 bits (103), Expect = 0.066,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 61/142 (42%), Gaps = 9/142 (6%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L    ++ + I  T  F  LFG   NL  + A++  IG  V+D +VV + +   +
Sbjct: 359 DFRSTLIPAISVPVAIIGTFFFLNLFGFSINLLTLFALVLAIGIVVDDAIVVVEAVHAKL 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL---PMAVWGGSVI--GSFAIPMAF 803
                  S +     +++E  G  V  S+   ++ +      + G + +    F + +A 
Sbjct: 419 DEGYK--SSKKATIDAMDEITGAIV--SITLVMAAVFVPVSFIEGSTGVFYKQFGLTLAI 474

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            I+++A +++ ++  +   +  
Sbjct: 475 AIILSAVNALTLSPALCALLLK 496


>gi|262195581|ref|YP_003266790.1| acriflavin resistance protein [Haliangium ochraceum DSM 14365]
 gi|262078928|gb|ACY14897.1| acriflavin resistance protein [Haliangium ochraceum DSM 14365]
          Length = 1028

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 75/553 (13%), Positives = 168/553 (30%), Gaps = 42/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++  ++  +G +      L +  +D  P+                     E  
Sbjct: 9   KRPIFTAMVTLIVVTLGAVS-----LSRLRIDMLPAIEMPRLT---------VRTNYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E+ + +           +  + + ++FA     +  A  V   L+ 
Sbjct: 55  SPEVMERLVTQPLEEIVATVPGVEELTSESSEGSSNVRVTFAWGTDIDVAAQDVRSRLED 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  D  +  +         +V+             E     +R R           
Sbjct: 115 ELNELPEDVTRPQIRKFDLASFPVVILGIGSGLDPVELTELIDLQVRYR---FARIPGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++  E DP++LR L      +       N                     
Sbjct: 172 QVDMWGGYEREVRVELDPNKLRALELPLDAVLAAIADANIDLPAGEIDA----------- 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G +     A  + +  + +                    I    A +    
Sbjct: 221 ---------GRYEVTLRAPAEFQNLEQIRQTVVAVRQGAPVTLGELAQIEDTYARLTRIV 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      +     +A  +              +      +++             S S 
Sbjct: 272 RVNGERGLRMAIRKQADANTVEVAHQVLAEIEAVNRDFPQLEVVP-VINQGNFIEQSISN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +     GL ++VL   +   +  +V   +I ++V+ T AL+ L G TL L ++ G+ 
Sbjct: 331 VARSVLYGGGLAVLVLLFFLRNLRSTMVISLAIPISVVATFALVYLGGFTLNLMTLGGLA 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           LG+G+ VDS+I+V E I     + +     +   G     + +  S +T L+  + L F 
Sbjct: 391 LGVGMMVDSSIVVLENIFRRREEMREEPAVAAVNGAREVGAAVLASTVTTLVIFLPLLFV 450

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G +    R  A  +G S++ ++  ++S+V  +    +R  +      +           
Sbjct: 451 RGVSGLLFRELAYVVGFSLICALAVSLSLVPMLASRFLRSAEDAHTPRHGRIARLAAAAD 510

Query: 538 IAIQFMRARFWGV 550
            AI  +  R+  +
Sbjct: 511 AAITGLSDRYRAL 523



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 73/245 (29%), Gaps = 5/245 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + V    PV L  +    ++        +        +   +    ++V     +  
Sbjct: 241 QTVVAVRQGAPVTLGELAQIEDTYARLTRIVRVNGERGLRMAIRKQADANTVEVAHQVLA 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             + +    P   +      G  I + +       +    +A+L+ ++        +   
Sbjct: 301 EIEAVNRDFPQLEVVPVINQGNFIEQSISNVARSVLYGGGLAVLVLLFFLRNLRSTMVIS 360

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + + +  T     L G   NL  +  +   +G  V+  +VV + +    +        
Sbjct: 361 LAIPISVVATFALVYLGGFTLNLMTLGGLALGVGMMVDSSIVVLENIF--RRREEMREEP 418

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIF 814
                    E     + +++   +  LP+    G         A  + F ++ A + S+ 
Sbjct: 419 AVAAVNGAREVGAAVLASTVTTLVIFLPLLFVRGVSGLLFRELAYVVGFSLICALAVSLS 478

Query: 815 IAAPI 819
           +   +
Sbjct: 479 LVPML 483


>gi|268591490|ref|ZP_06125711.1| multidrug efflux RND transporter [Providencia rettgeri DSM 1131]
 gi|291313144|gb|EFE53597.1| multidrug efflux RND transporter [Providencia rettgeri DSM 1131]
          Length = 1034

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 82/698 (11%), Positives = 193/698 (27%), Gaps = 56/698 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  IGL       L +  + ++P                   + +   
Sbjct: 9   RRPVLALVVSALIVLIGLFA-----LSKLPIRQYPQLESST-------------ITITTQ 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  S ++       S  Q  + +T+    +R       +V  
Sbjct: 51  YPGASAKLMQGFVTQPIAQAVSSVEGVDYLSSSSVQGSSLVTVRMELNRDSTQALAQVMA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  KL  +    ++  ++ +  ++     +   +   A   +  I R         
Sbjct: 111 KVNQVRYKLPKEAYDPVIELSSGESTAVAYIGFSSTNLSIPA--LTDYISRVIEPMYSSI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +        + +    D  +L     T A ++      N           F     
Sbjct: 169 DGVAKVQVFGGQQLAMRLWLDADKLAGRGLTAADVAQAVRQNNYQAAPGKVKGEF----- 223

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                           ++    N D        D+     G           I    A  
Sbjct: 224 ---------------VISNVYVNTDLTNVDEFRDLVIRNDGNGLVRLKDVGTIELGAAST 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               ++                +    ++    L   +     P     +          
Sbjct: 269 ETSGLMNGEPAIYLGLFATPTGNPLVIVDGMNQLMPDITKTLPPGVKVEMAFETSRFIKA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V+ V+++ +   +  ++   +I L+++   AL+   G ++ L ++
Sbjct: 329 SIDQVISTLVEALLIVIAVIYLCLGSIRSVIIPILAIPLSMLGAAALMMAFGFSINLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +     + +S   +  +G       +    IT       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENVHRHIEEGKSPVLAALIGAREVAGPVIAMTITLAAVYAPI 448

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
                  G   + FA+T+  ++++S   A+++   M  F++  K+ +         FF  
Sbjct: 449 GLMSGLTGALFKEFALTLAGAVIVSGIVALTLSPVMSSFMLNSKQNEGRMARMAETFFST 508

Query: 535 PDC-----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +          GV    +F    +           ++ +  +   + + +  
Sbjct: 509 LAHYYTIVLNFSLKNRWLTGVIAVGVFISLPLLYQSAPRELAPVEDQSSVLTAIKSPQHA 568

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  V      L            E      +    G S +         ++        
Sbjct: 569 NLEYVERFSRKL----HDVFMELPETESTWIINGTDGPSASFGGTNLTSWEQRDRAASEI 624

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                  VG      +    +  +  S   + I + +R
Sbjct: 625 QGDLQGRVGDVEGNSIFVFQLPALPGSTGGLPIQMVLR 662



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 90/258 (34%), Gaps = 7/258 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    N  V L  V +        + S         +L       G+ +     +  + 
Sbjct: 244 VIRNDGNGLVRLKDVGTIELGAASTETSGLMNGEPAIYLGLFATPTGNPLVIVDGMNQLM 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
             IT+ +P            +  +  I + I  ++ + + ++  I++        +  I 
Sbjct: 304 PDITKTLPPGVKVEMAFETSRFIKASIDQVISTLVEALLIVIAVIYLCLGSIRSVIIPIL 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L +         FG   NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 AIPLSMLGAAALMMAFGFSINLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGKSPV 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E  G  +  ++       P+ +     G++   FA+ +A  ++V+   ++ +
Sbjct: 421 LAALIGAREVAGPVIAMTITLAAVYAPIGLMSGLTGALFKEFALTLAGAVIVSGIVALTL 480

Query: 816 AAPILLFIYDWRAKNARI 833
           +  +  F+ + +    R+
Sbjct: 481 SPVMSSFMLNSKQNEGRM 498



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 81/247 (32%), Gaps = 10/247 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V +     + +      + Q+       F+ +   + +    PG ++ Q           
Sbjct: 765  VKSEAGTMIPLSTVVDINTQVEPNKLTQFNQQNAAIFQAIPAPGVTLGQAVAYLDNIANE 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L        + + I + + +  +++     L  + T+ 
Sbjct: 825  LPAGFSHDWQSDSRQYKQEGNTLA----FAFMAALIIIYLVLAAQYESLVDPLIILITVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     N+     ++TLIG      +++ +   +        +  R  I
Sbjct: 881  LSICGALIPLALGYATLNIYTQIGLVTLIGLISKHGILMVEFANE--LQANEGLDRRHAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             K+    L   + T+ A  I ++P+      G +      + +  G++V    ++F+   
Sbjct: 939  LKAAQIRLRPILMTTAAMVIGLVPLLFATGAGANSRFGLGLVIVTGMLVGTLFTLFVLPT 998

Query: 819  ILLFIYD 825
            I   +  
Sbjct: 999  IYTLLAR 1005


>gi|167562238|ref|ZP_02355154.1| AcrB/AcrD/AcrF family protein [Burkholderia oklahomensis EO147]
 gi|167569483|ref|ZP_02362357.1| AcrB/AcrD/AcrF family protein [Burkholderia oklahomensis C6786]
          Length = 1036

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 75/622 (12%), Positives = 175/622 (28%), Gaps = 31/622 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                     + +   +    +     +              + ITL F+     +    
Sbjct: 47  VQTFYPGASPEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDVAEQ 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +    + L  D     +        + V++   +        +       +   +
Sbjct: 107 EVQAAINAAGNLLPSDLPAPPIYAKVNPADAPVIT-LAVTSKTLPLTQVQDLADTRLAMK 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I           S      +  + +P  L         +       N +     F     
Sbjct: 166 ISQVAGVGLVSLSGGNRPAVRIQANPLALASYGLNLDDLRTTISNLNVNTPKGNF----- 220

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            D     Y +    +++                             R         I   
Sbjct: 221 -DGPTRAYTINANDQLTSAEQYQDA--------------VVAYKNGRPVMLTDVAKIVAG 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                 G  + +          +   +   T++    +   L+          +      
Sbjct: 266 SENTKLGAWVDSEPAIILNVQRQPGANVIQTVDNIKAILPKLQESLPAALDVQIVTDRTT 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +    +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L 
Sbjct: 326 MIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLSGFSLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I++ E I     +  S   +   G  +   TI    ++ +  
Sbjct: 386 NLSLMALTIATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAV 445

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G     FAIT+ ++I+IS   ++++V  M   ++R+             
Sbjct: 446 LIPLLFMGDVVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHTPPPESHRFEAKV 505

Query: 531 FFLIPDCIA-------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             LI   IA           R R   V   +  ++ ++  +      +     G IQ   
Sbjct: 506 HVLIDRVIARYGIALQWVLNRQRSTLVVALLTLALTALLYVEIPKGFFPTQDTGVIQAIT 565

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A + V    +    ++L    +   + +   +F+         +  +  +    + + +
Sbjct: 566 QAPQAVSYGAMAERQQALAAEILKHPDVESLTSFIGVDGSNITLNSGRMLINLKPRDERS 625

Query: 644 EIVPLSTIQNTEIVGPKISREL 665
           E          + V       L
Sbjct: 626 ETASDVIRSLQQQVSNIPGISL 647



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 91/242 (37%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     RPV L+ V   +   +   +           L   +    + +     ++ + 
Sbjct: 245 VVAYKNGRPVMLTDVAKIVAGSENTKLGAWVDSEPAIILNVQRQPGANVIQTVDNIKAIL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            K+ E +P +           + R  +R     + ++   +++ +++     +A +    
Sbjct: 305 PKLQESLPAALDVQIVTDRTTMIRAAVRDVQFELGLAVALVVLVMYLFLANVYATIIPSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +      S  
Sbjct: 365 SVPLSLIGTLAVMYLSGFSLNNLSLMALTIATGFVVDDAIVMIENI---ARYVEEGDSAL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A  S+ +
Sbjct: 422 EAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAIVSLTL 481

Query: 816 AA 817
             
Sbjct: 482 VP 483



 Score = 41.2 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|160884018|ref|ZP_02065021.1| hypothetical protein BACOVA_01992 [Bacteroides ovatus ATCC 8483]
 gi|156110748|gb|EDO12493.1| hypothetical protein BACOVA_01992 [Bacteroides ovatus ATCC 8483]
          Length = 1143

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 72/527 (13%), Positives = 145/527 (27%), Gaps = 44/527 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +          I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSTASNTGSGDISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLVVFSLYDETDTYSESFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P  + Q       +S      N       FG    R   
Sbjct: 171 QGVGDANVLG-QDYSMRIWLRPDVMAQYKLVPGDVSAALAEQNVEAAPGQFGE---RSDQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPDGEVLRLKDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               +          
Sbjct: 274 NFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKLNISMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVVKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFILSLVGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   V 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMAVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   R F +TM ++I +S   A+++  A+   +++  K 
Sbjct: 454 VSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHKK 500



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 76/268 (28%), Gaps = 29/268 (10%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A     ++   S  +      IS  N       +V          A T + E+ ++ + 
Sbjct: 864  SAGEMAPIAQFISVEKVYGPDIISRFNLYTSMKVMVAPASGYTSGQALTALAEVAQENLP 923

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT- 699
                                        G+I     + +Y+ +      +   L  + + 
Sbjct: 924  TGYTYELGGMAREEAQSSG------SATGLIFVLCFVFVYLLLSAQYESYILPLAVLLSI 977

Query: 700  ---LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRK 746
               L+       G  A+  I      +           A++ L+G    + +++ +    
Sbjct: 978  PFGLLGSFLFVNGVSAIGNISALKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA-- 1035

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAF 803
             +      +S            L   + TS+A  + +LP+   +G       +       
Sbjct: 1036 -LDRRKMGMSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIG 1094

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G+++     IFI   + +     + K  
Sbjct: 1095 GMLIGMICQIFIVPALFVIFQYLQEKVK 1122



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          + + +    +    +  Q    ++      +E +  + ++ +P     
Sbjct: 262 DIAEIQLDRLGYNFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKL 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + +  +I + I + I ++I        L     + + +  T    
Sbjct: 322 NISMNANDFLFASIHEVVKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFIL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +    TS     +   ++NE  G 
Sbjct: 382 SLVGFSLNLLTLCALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASI--DAMNELGGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V  ++      +P++  GG+       F + MA  I ++A +++ ++  +   +     
Sbjct: 440 IVSITLVMMAVFVPVSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHK 499

Query: 829 K 829
           K
Sbjct: 500 K 500


>gi|332766429|gb|EGJ96638.1| acrB/AcrD/AcrF family protein [Shigella flexneri 2930-71]
          Length = 1010

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/599 (11%), Positives = 159/599 (26%), Gaps = 40/599 (6%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            ++L   I   G+L           +   P       +             L     + +
Sbjct: 3   TILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGASPETM 48

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    +     +        S      +I L F   R     A  V   +    S L
Sbjct: 49  ASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAAQSLL 108

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                            + ++    +        E       Q    I   +        
Sbjct: 109 PSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGDVDVG 167

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
              L  +     P  L     +   +       N  K          R        ++  
Sbjct: 168 GSSLPAVRVGLTPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDELKTA 227

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            E                       +                 +   +  V +  +  A 
Sbjct: 228 AE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTNAK 267

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                +     + +   T+++       L+          + +        S    + T 
Sbjct: 268 PAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTL 327

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +  G 
Sbjct: 328 IISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGF 387

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFFFGGG 483
            VD  I+V E I            +   G      T+   +++ +      +++    G 
Sbjct: 388 VVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGR 447

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
            +R FA+T+ ++I IS+  ++++   M  ++++  K +           L+         
Sbjct: 448 LLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQGYGKS 507

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG--VLANRPVDLSVVRSNLES 600
                     +   +     L           +    L   + A++ +    +R  L+ 
Sbjct: 508 LKWVLNHTRLVGVVLLGTIALNISIPKTFFPEQDTGVLMGGIQADQSISFQAMRGKLQD 566



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 273 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 332

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 333 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 392

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 393 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 449

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 450 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 485



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 788  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 847

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 848  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 907

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 908  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 965

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 966  PLEITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1002


>gi|260172545|ref|ZP_05758957.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp. D2]
 gi|315920838|ref|ZP_07917078.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694713|gb|EFS31548.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1143

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 72/527 (13%), Positives = 148/527 (28%), Gaps = 44/527 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +         +I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSTASNTGSGEISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLVVFSLYDETDTYSESFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P  + Q     + +S      N       FG    R + 
Sbjct: 171 QGVGDANVLG-QDYSMRIWLRPDVMAQYKLVPSDVSTALAEQNVEAAPGQFGE---RSNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPDGEVLRLKDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               +          
Sbjct: 274 NFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKLNISMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFILSLVGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   V 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMAVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   R F +TM ++I +S   A+++  A+   +++  K 
Sbjct: 454 VSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHKK 500



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 76/268 (28%), Gaps = 29/268 (10%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A     ++   S  +      IS  N       +V          A T + E+ ++ + 
Sbjct: 864  SAGEMAPIAQFISVEKVYGPDIISRFNLYTSMKVMVAPASGYTSGQALTALAEVAQENLP 923

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT- 699
                                        G+I     + +Y+ +      +   L  + + 
Sbjct: 924  TGYTYELGGMAREEAQSSG------SATGLIFVLCFVFVYLLLSAQYESYILPLAVLLSI 977

Query: 700  ---LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRK 746
               L+       G  A+  I      +           A++ L+G    + +++ +    
Sbjct: 978  PFGLLGSFLFVNGVSAIGNISALKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA-- 1035

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAF 803
             +      +S            L   + TS+A  + +LP+   +G       +       
Sbjct: 1036 -LDRRKMGMSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIG 1094

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G+++     IFI   + +     + K  
Sbjct: 1095 GMLIGMICQIFIVPALFVIFQYLQEKVK 1122



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          + + +    +    +  Q    ++      +E +  + ++ +P     
Sbjct: 262 DIAEIQLDRLGYNFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKL 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + +  +I + I + I ++I        L     + + +  T    
Sbjct: 322 NISMNANDFLFASIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFIL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +    TS     +   ++NE  G 
Sbjct: 382 SLVGFSLNLLTLCALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASI--DAMNELGGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V  ++      +P++  GG+       F + MA  I ++A +++ ++  +   +     
Sbjct: 440 IVSITLVMMAVFVPVSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHK 499

Query: 829 K 829
           K
Sbjct: 500 K 500


>gi|333029351|ref|ZP_08457412.1| acriflavin resistance protein [Bacteroides coprosuis DSM 18011]
 gi|332739948|gb|EGJ70430.1| acriflavin resistance protein [Bacteroides coprosuis DSM 18011]
          Length = 1048

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 79/670 (11%), Positives = 182/670 (27%), Gaps = 43/670 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +                 
Sbjct: 9   KKPIMTSLCFLAVVIFGLFS-----LSKLPVDLYPDIDTNTIM---------VMTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNSVSNLKHISSRSSENMSIITLEFEYGYDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D +  ++   +   I IV+     ++  S   +         ++ +       
Sbjct: 115 ITSYLPDDSETPIIFKFSTDMIPIVVLSVQAEESQSALYKILD---DNVVNPLARIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     +L    DP +L     T   +S      N +  G  F +     S   + 
Sbjct: 172 TVSISGAPKRELQVYCDPGKLEAYNLTIEAISAVIGAENKNIPGGNFDIGNETFSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D  +++ I +                            +      +   +       
Sbjct: 232 EFTDASQLNDIVIGSHK--------------------GANIYLRDVAKVVDTVEERSQEA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I   ++  +     +        L+          +        L + + 
Sbjct: 272 YNNGKQGAMIIVQKQSGANSVNISKAVLDAMPRLQETLPTDVKLGIIVDTSENILNTINS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T       V+IV+F+ +   +  L+   +I L++I +   L++ G TL + S++ + 
Sbjct: 332 LTETVFYALIFVVIVVFVFLGRWRATLIICITIPLSLIASFIYLAISGNTLNIISLSSLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG+ VD  I+V E +     +      +   G +    ++  S +T +     L    
Sbjct: 392 IAIGMVVDDAIVVLENVTTHIERGSEPKQAAVHGTNEVAISVIASTLTMIAVFFPLTMVS 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
              G   R     M   + IS   A+S+   +    + R      I     +    + D 
Sbjct: 452 GITGVMFRQLGWMMCAIMFISTLAALSLTPMLCSQLLKRENSSSKIYKLFFTPIEKVLDG 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           + + + +   W V    +  +  I                       A   V L +    
Sbjct: 512 LDVVYAKTLNWAVRHRTIIVLLCIAFFVVSLFCIKGISTEFFPAQDNARIAVKLELPIGT 571

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            + +       Q    E     + +    +        +     + +        N  + 
Sbjct: 572 RKEVAQA--ISQKLTNEWMQKYKEEIIVCNYTVGQADSDNTFASMQDNGSHIVSFNIRLQ 629

Query: 658 GPKISRELIR 667
            P   +  + 
Sbjct: 630 NPGDRQRSLE 639



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 81/255 (31%), Gaps = 8/255 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +L        V   ++  +             +  +V +      +     V    +  
Sbjct: 779  EILIYNNQGEPVRVKDVGKVVEKFAPPTIERKNRERIVTVSATISGAALGEVVQSGNQVI 838

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
                +P                      ++ ++I  I + I +  +F+   +    + +L
Sbjct: 839  RQMDIPQGINIQIAGSFEDQQESFRDLSVLALLI-IILVFIVMAAQFESLTYPFIIMFSL 897

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                +  L    +     ++ ++   + LIG  V + +V+ D +          +S  + 
Sbjct: 898  PFAFSGVLMALFMTRSTLSVMSLLGAIMLIGIVVKNGIVLIDYI---TLCRERGMSVINS 954

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +  S    L   + T+    + ++PMA+    G  +    A+ +  G+ V+   ++ +  
Sbjct: 955  VITSGKSRLRPVLMTTATTILGMVPMAISTGQGSEMWRPMAVAVIGGLTVSTVLTLLLIP 1014

Query: 818  PILLFIYDWRAKNAR 832
             +         K+ R
Sbjct: 1015 TLYCIFAGTGIKHQR 1029



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 90/245 (36%), Gaps = 7/245 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +++++       N   +   ++  +    +SV  ++ +     ++ E +P     
Sbjct: 256 DVAKVVDTVEERSQEAYNNGKQGAMIIVQKQSGANSVNISKAVLDAMPRLQETLPTDVKL 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
              +   +     I      V  + I ++I +++   +W   L    T+ L +  +  + 
Sbjct: 316 GIIVDTSENILNTINSLTETVFYALIFVVIVVFVFLGRWRATLIICITIPLSLIASFIYL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A+ G   N+ +++++   IG  V+D +VV + +             +       NE    
Sbjct: 376 AISGNTLNIISLSSLSIAIGMVVDDAIVVLENV---TTHIERGSEPKQAAVHGTNEVAIS 432

Query: 772 SVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++       P+  V G  G +       M   + ++  +++ +   +   +     
Sbjct: 433 VIASTLTMIAVFFPLTMVSGITGVMFRQLGWMMCAIMFISTLAALSLTPMLCSQLLKREN 492

Query: 829 KNARI 833
            +++I
Sbjct: 493 SSSKI 497


>gi|167647269|ref|YP_001684932.1| acriflavin resistance protein [Caulobacter sp. K31]
 gi|167349699|gb|ABZ72434.1| acriflavin resistance protein [Caulobacter sp. K31]
          Length = 1069

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 71/584 (12%), Positives = 164/584 (28%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+L   +   G+       +       +P+                    L   
Sbjct: 9   KRPVATVLLTLGVAMAGIAAFFVLPVSPLPQVDYPTIS--------------VSANLSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +               ++TL F  +R  +  A +V   +  
Sbjct: 55  SPDTMASSVATPLERRLGVIPGVTEMTSQSNTGSARVTLQFDLNRNIDGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L    + N          + V+    +        +    +      ++       
Sbjct: 115 ARSDLPATLRSNPSYRKQNPSDAPVII-LALTSDTKSPGQIYDAVSNIVAQRLAQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   L  +    +P  L         +       N ++                Q 
Sbjct: 174 DVEIGGGSLPAVRVSVNPFLLNTYGIALEDVRAAVQAANANRPKGAVEGA----GQRFQV 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++  +     A                  G           +   +A      
Sbjct: 230 YTSPGGRVAADYAGLVVAW----------------RGDAPVRLKDVAEVTDSVADTRTLG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         + + +   +   T+++       LRA         V   +  +   S   
Sbjct: 274 LFNGKPAIIILVTRQPGANIIQTVDSVRATLPELRAQLPADINVAVASDSTNSIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+   +   +   +   +  ++++ T  ++ LLG +L   S+  I 
Sbjct: 334 IEVTLLISIVLVVLVVSAFLRSARATFIPAAATIVSLLGTFGVMYLLGFSLNNLSLMAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E       K    F +  +G      T+   +I+ +   + L F G
Sbjct: 394 VATGFVVDDAIVVLENTSRHIEKGMDRFAAALLGAREVGFTVLSISISLVAVFIPLLFMG 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FA+T+  +++IS+  +++    M  +++R  K    +      F    + +
Sbjct: 454 GQVGRLFREFAVTLSAAVMISLVISLTTTPMMCAYLLRPPKEGQREGRIARWFEAGFNRV 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +  +  W +    +  +  + ++      Y    KG     
Sbjct: 514 HKTYEYSLDWALAAKPVVLLILVVVVAMTAWLYVAVPKGFFPQQ 557



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 7/150 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                           I+ +  T G   L G   N  ++ A+    G+ V+D +VV +  
Sbjct: 351 AFLRSARATFIPAAATIVSLLGTFGVMYLLGFSLNNLSLMAITVATGFVVDDAIVVLEN- 409

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +     +           E     +  S++     +P+   GG V      FA+ +
Sbjct: 410 --TSRHIEKGMDRFAAALLGAREVGFTVLSISISLVAVFIPLLFMGGQVGRLFREFAVTL 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  ++++   S+    P++        K  
Sbjct: 468 SAAVMISLVISL-TTTPMMCAYLLRPPKEG 496



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/247 (10%), Positives = 88/247 (35%), Gaps = 6/247 (2%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                     + S+                   + +   D V+ ++    +++   +I   
Sbjct: 810  ATPMTPLMAIASVAQAATPTSINHQNGELATTVSFNLADGVSLSQAQAAIRQAEADIGLP 869

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
            +++  +     K + +  ++    V  + +A+ I + I ++ +   L  ++TL       
Sbjct: 870  TSVHGSFQGSAKSANDTNKQQPFLVAAAIVAIYIVLGILYESYVHPLTVLSTLPSAGVGA 929

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            +    +F +EF++ A+  V  L+G    + +++ D   +     +  ++  + + ++   
Sbjct: 930  MLALLIFKMEFSVIALIGVFLLLGIVKKNAILIIDFALE--AQRSRGLTAIEAVREASLL 987

Query: 768  TLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 + T+       + +      G  +     I +  G++ +   ++     + +++ 
Sbjct: 988  RFRPILMTTLAAALGALPLAIGFGEGAELRRPLGITIIGGLIASQLLTLITTPVVYVYLD 1047

Query: 825  DWRAKNA 831
              R K  
Sbjct: 1048 RLRGKKR 1054


>gi|165918571|ref|ZP_02218657.1| multidrug resistance protein MdtC [Coxiella burnetii RSA 334]
 gi|165917699|gb|EDR36303.1| multidrug resistance protein MdtC [Coxiella burnetii RSA 334]
          Length = 1040

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 68/530 (12%), Positives = 151/530 (28%), Gaps = 38/530 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +IL   +   GL+        +  +   P+                    L   
Sbjct: 9   QRPVATIILMLALVIAGLVA-----YFRLPISELPNVDFPTL---------AVSAKLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + +   +    ++  S +               KI + FA +R  ++ A  V   L  
Sbjct: 55  DPETMATSVATPLEKELSTISGIESMSSVSSSGSTKIIMQFALTRNIDSAAQDVQSALLQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L         +       S VL    +        +            + +     
Sbjct: 115 VARRLPSQMPDPPTIRKMNPADSPVLY-LALSADHLSMTKLDDFAENYLAPNLSMLNGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P+ ++    +   +       N+++                  
Sbjct: 174 TVNVFGAQQYAVRIHLNPNAVKSRGLSLDDIKQSIQNLNSNQA----------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                ++  G +             +    I   + G+          +   +A      
Sbjct: 217 --TGTLQTDGFYHLIKVDGGLDNAKQFGNAIISYQNGSP-VRLKDIATVKNSIANDKAVT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    +         L           V          +   
Sbjct: 274 EYNNKRAIVLAIQRQPGSNTVSVVNEVLKSLPGLNQKLPGDAKLQVVYNKAVFIQSAIDD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV +V+++ +    + ++A  S+ ++VI T A++ LL  +L   S+  +V
Sbjct: 334 VELTLLFAVFLVTVVVYLFLRNFSFTIIAALSLPISVIATFAMMYLLSYSLDNLSLMALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  +D  I+V E I     +      +   G      T+    I+ +   + +FF G
Sbjct: 394 LAVGFIIDDAIVVLENIVRYIEQGMDKLTASLRGSKEVNFTVVAMTISLVAVFIPIFFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              G     FA  +G+SIL S F A++++  +   +I+ K  +       
Sbjct: 454 GIVGRLFHEFAAVVGISILFSAFVALTLIPMLCSRLIKEKSSQEEKKPTW 503



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 89/259 (34%), Gaps = 11/259 (4%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G   +      PV L  + +   S+       +  +     L   +    ++V+    + 
Sbjct: 242 GNAIISYQNGSPVRLKDIATVKNSIANDKAVTEYNNKRAIVLAIQRQPGSNTVSVVNEVL 301

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
                + + +P               +  I    + ++ +   + + +++  + + F + 
Sbjct: 302 KSLPGLNQKLPGDAKLQVVYNKAVFIQSAIDDVELTLLFAVFLVTVVVYLFLRNFSFTII 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A  +L + +  T     L     +  ++ A++  +G+ ++D +VV + +   ++     +
Sbjct: 362 AALSLPISVIATFAMMYLLSYSLDNLSLMALVLAVGFIIDDAIVVLENI---VRYIEQGM 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSS 812
                  +   E     V  +++     +P+   GG V      FA  +   I+     S
Sbjct: 419 DKLTASLRGSKEVNFTVVAMTISLVAVFIPIFFMGGIVGRLFHEFAAVVGISILF----S 474

Query: 813 IFIAAPILLFIYDWRAKNA 831
            F+A  ++  +     K  
Sbjct: 475 AFVALTLIPMLCSRLIKEK 493



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 101/277 (36%), Gaps = 9/277 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               + +       + I     + +       V LS + +  ++     I+          
Sbjct: 750  DYQVIMDIDPKYQHSIGSLNNLSIKSSTGNMVPLSDLVTMSQTSGPLAINHYEQLPAITL 809

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
               LQ          +V  + K+ +   V  + I   E     ++  L+  G   +II  
Sbjct: 810  SFNLQPGYSLGNVTAKVQAVAKQTLPMDVSGNFIGTAEKFQQSLTTLLLLLGFTILIIYM 869

Query: 678  IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            +  ++Y      +   L  +T L   I   L    +F  E N+ +   ++ L+G +  + 
Sbjct: 870  VLAILY----ENFIHPLTILTALPFAIFGALLCLYIFNQELNIFSFIGLIMLVGITKKNG 925

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D     M+     +  +  I ++ +      + T+++A ++ LP+A+    GG   
Sbjct: 926  IIMVDFALDAMRK--QGLDAKQAILQACSIRFRPIMMTTVSAIVAALPIALGVGAGGETR 983

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                I +  G+V +   ++++     + +    +K +
Sbjct: 984  QGLGISIVGGLVFSQLITLYVTPVFYIVMDKLFSKKS 1020


>gi|154706809|ref|YP_001424255.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           Dugway 5J108-111]
 gi|154356095|gb|ABS77557.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           Dugway 5J108-111]
          Length = 1012

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 80/615 (13%), Positives = 172/615 (27%), Gaps = 42/615 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L  ++  +G++        +  L  FP                      +  
Sbjct: 9   RQPVLAIVLSLILVVLGVVA-----FQRLELRFFPKLELPILT---------VATTYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S +        +     + +T+ F      E  A  V   +  
Sbjct: 55  SAQLMESQVTTQIENALSGVDHIASISSTSYPGSSYVTVLFQLGGNFEEEASAVRDKVFA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  +     +   T+    +             + +    + R     +       
Sbjct: 115 IRDQLPPNANPPTITVGTKGNPVL---GIGFIDPQKSSADIRDYVERAVQPALRQLSGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    + S++     T   +       N               S  +  
Sbjct: 172 EVDILGASDYAMRIWLNASKMVAHQVTVTDVKNALTANNIYFPAGSIQEPKRNYSIVSHT 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D                          I  +  G                ++     
Sbjct: 232 QLKDATA-------------------FGNIIIKNNDGGTVRLNDIGHAELGYRSLYEAPM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      + +     + +            A ++    P     V          S   
Sbjct: 273 RINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASVNYDASTFLKSSIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV+ V+F+ +   +   +   +I +++I   A + L G T+   S+ GIV
Sbjct: 333 TFYAMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKLFGFTINTMSLLGIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I     +  + F +   G       I    +T +     + F  
Sbjct: 393 LAIGLVVDDAIVMLENIHRHIEEGMTPFQAAIKGSREISFAIIAMALTLVAVYAPVGFVQ 452

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA T+  +++IS F A+++   M   I+  +   S     + R F      
Sbjct: 453 GFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKDSRLTIIIDRAFSQLTGF 512

Query: 539 AIQFMRA---RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +F++    +       +L       +LF    +  I  +    + V    P   S+  
Sbjct: 513 YQRFLKFALNKRRLFIAGLLAIAGVGYVLFISLPSELIPKEDIGLIQVSVTSPSGASLNY 572

Query: 596 SNLESLQIGDISFQN 610
           +N  + Q+  I  QN
Sbjct: 573 TNQYAEQVEKIIQQN 587



 Score = 85.5 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 82/243 (33%), Gaps = 7/243 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + L    + +   +        L+    Q  + V     ++     I + +P     + 
Sbjct: 259 HAELGYRSLYEAPMRINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASV 318

Query: 655 EIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
                   +  I +    +     + + +          A   I T+ + +     F  L
Sbjct: 319 NYDASTFLKSSIEETFYAMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG   N  ++  ++  IG  V+D +V+ + +    +     ++      K   E     +
Sbjct: 379 FGFTINTMSLLGIVLAIGLVVDDAIVMLENIH---RHIEEGMTPFQAAIKGSREISFAII 435

Query: 774 YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++       P+     +   +   FA  +A  +V++A  ++ ++  +   I   R K+
Sbjct: 436 AMALTLVAVYAPVGFVQGFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKD 495

Query: 831 ARI 833
           +R+
Sbjct: 496 SRL 498



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 87/274 (31%), Gaps = 11/274 (4%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            +         DF    +L V +N   D +   S   S  I            +F      
Sbjct: 743  IVQMDKQDLTDFNALKKLYVHSNNKTDANKGNSIPVSSLIDLTPTVGQGSFTHFNRFRSG 802

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLI 682
                 +A       V   I   VP     +        + + ++     + I     + I
Sbjct: 803  TISARLAPGYSESQVIDYIKAHVPFVMTSDVHYAFSGKAAQFLQSSKSMIGIILTSLIFI 862

Query: 683  YIWIRFKWYFALGA-ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVV 739
            Y+ +  ++   L   +  L + +    G  +L   G   ++ +   ++TLIG      ++
Sbjct: 863  YLVLSAQFGSFLDPFVILLAVPLCIVGGLLSLKLTGRTLSIYSQIGLVTLIGMISKHGIL 922

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GS 796
            +   +     L    ++ ++ I +     L   + T++A     LP+A+  G   I    
Sbjct: 923  ITQFIND---LRKQGMAMQEAILRGAMIRLRPVLMTTLAMVFGALPLALASGPGSIGRHQ 979

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                +  G++     S+ I  PI         K 
Sbjct: 980  IGWVIVGGLLFGTFFSL-IVVPIAYSYLGRFKKR 1012


>gi|16761057|ref|NP_456674.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141246|ref|NP_804588.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213425518|ref|ZP_03358268.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213648510|ref|ZP_03378563.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|289826371|ref|ZP_06545483.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|60390132|sp|Q8Z5F6|MDTC_SALTI RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|25323699|pir||AE0771 probable RND-family transporter protein STY2341 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503355|emb|CAD02491.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136872|gb|AAO68437.1| putative RND-family transporter protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 1026

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEARMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAIDRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEARMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|167589908|ref|ZP_02382296.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Burkholderia ubonensis Bu]
          Length = 978

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 54/495 (10%), Positives = 131/495 (26%), Gaps = 18/495 (3%)

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
                ++ ++F      +  A +V   +    S+L  + ++  + T  +    ++     
Sbjct: 7   SDGSLQVVVTFVPGVDPDTAAVRVQNRVSQALSRLPDEVRQYGVTTQKQSPTPLMYVSLY 66

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
                  ++     +     D++                  +    DP+RL     T + 
Sbjct: 67  SPDNSRDSLYLRNYLTLHVKDELSRITGIGDVGVYGSGDYAMRIWLDPNRLASRGLTASD 126

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                   N        G      +      +  +  +                 +    
Sbjct: 127 AIAAVREQNVQVSAGQLGAEPSPKATDFLVSINVRGRL-------------RTVQEFGDI 173

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +       +         +                             +     +     
Sbjct: 174 VLRSGDDGQVVKLSDVVRLELGAGDYTLRSFFNDRQSAVVGVFLSPGANALDVAKAVYAK 233

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
              L     P                S    + T      LV+ V+ + +   +  ++  
Sbjct: 234 LDALSKRFPPGIAYRPVWDPTVFVRESIRAVQHTLIEAVVLVVFVVILFLQTWRASIIPL 293

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ ++V+ T A L LLG ++   ++ G+VL IG+ VD  I+V E +     +  S   +
Sbjct: 294 VAVPVSVVGTFAWLLLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNIAQGLSPRDA 353

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVR 508
                      I    +      V + F     G   + FA+T+ +S +IS   ++++  
Sbjct: 354 AHQAMKEVSGPIVAIALVLCAVFVPMAFLSGVTGQFYKQFAVTIAISTVISAVNSLTLSP 413

Query: 509 AMMIFI--IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           A+   +         ++       F  +       F R+     G+          +   
Sbjct: 414 ALAAKLLRPHGAPPDALTRALDRAFGWLFRPFNRFFERSSDRYHGVVGRSLKRRGAVFAV 473

Query: 567 HGLNYGIDFKGGIQL 581
           +             +
Sbjct: 474 YAALLAATALLFNAV 488



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/216 (12%), Positives = 71/216 (32%), Gaps = 8/216 (3%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
             +         D    +    + K +      L      E       +       + V 
Sbjct: 745 NGYPAANLIGDADPKVMSSAQAIAKLEQIAKDVLPPGITLEWTDLSYQQVTQSNAAIVVF 804

Query: 675 -ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++ + + + +   ++ W   L  I  + + +   L    L G + N+     ++ L+G 
Sbjct: 805 PLAVMLVFLVLASLYESWTLPLAVILIVPVCMCAALFGVWLSGGDNNVFVQVGLVVLMGL 864

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
           +  + +++ +  R+   L        +   ++    L   V TS+A     +P+ +    
Sbjct: 865 ACKNAILIVEFARE---LEIQGQGIVEAALEACRLRLRPIVMTSVAFIAGSVPLLIGSGA 921

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           G  V  +  + +  G++      +F+     + I  
Sbjct: 922 GSEVRAATGVTVFAGMLGVTLFGLFLTPVFYVAIRR 957



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 8/140 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + +  T  +  L G   N   +  ++  IG  V+D +VV + + +N+ 
Sbjct: 286 WRASIIPLVAVPVSVVGTFAWLLLLGYSINTLTLFGLVLAIGIVVDDAIVVVENVERNIA 345

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAVWG--GSVIGSFAIPMAFGI 805
                +S RD   +++ E  G  V  ++   A    +   + G  G     FA+ +A   
Sbjct: 346 Q---GLSPRDAAHQAMKEVSGPIVAIALVLCAVFVPMA-FLSGVTGQFYKQFAVTIAIST 401

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A +S+ ++  +   +  
Sbjct: 402 VISAVNSLTLSPALAAKLLR 421


>gi|295086139|emb|CBK67662.1| Cation/multidrug efflux pump [Bacteroides xylanisolvens XB1A]
          Length = 1143

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 72/527 (13%), Positives = 148/527 (28%), Gaps = 44/527 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +         +I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSTASNTGSGEISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLVVFSLYDETDTYSESFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P  + Q     + +S      N       FG    R + 
Sbjct: 171 QGVGDANVLG-QDYSMRIWLRPDVMAQYKLVPSDVSTALAEQNVEAAPGQFGE---RSNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPDGEVLRLKDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               +          
Sbjct: 274 NFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKLNISMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFILSLVGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   V 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMAVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   R F +TM ++I +S   A+++  A+   +++  K 
Sbjct: 454 VSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHKK 500



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 76/268 (28%), Gaps = 29/268 (10%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A     ++   S  +      IS  N       +V          A T + E+ ++ + 
Sbjct: 864  SAGEMAPIAQFISVEKVYGPDIISRFNLYTSMKVMVAPASGYTSGQALTALAEVAQENLP 923

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT- 699
                                        G+I     + +Y+ +      +   L  + + 
Sbjct: 924  TGYTYELGGMAREEAQSSG------SATGLIFVLCFVFVYLLLSAQYESYILPLAVLLSI 977

Query: 700  ---LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRK 746
               L+       G  A+  I      +           A++ L+G    + +++ +    
Sbjct: 978  PFGLLGSFLFVNGVSAIGNISALKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA-- 1035

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAF 803
             +      +S            L   + TS+A  + +LP+   +G       +       
Sbjct: 1036 -LDRRKMGMSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIG 1094

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G+++     IFI   + +     + K  
Sbjct: 1095 GMLIGMICQIFIVPALFVIFQYLQEKVK 1122



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          + + +    +    +  Q    ++      +E +  + ++ +P     
Sbjct: 262 DIAEIQLDRLGYNFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKL 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + +  +I + I + I ++I        L     + + +  T    
Sbjct: 322 NISMNANDFLFASIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFIL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +    TS     +   ++NE  G 
Sbjct: 382 SLVGFSLNLLTLCALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASI--DAMNELGGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V  ++      +P++  GG+       F + MA  I ++A +++ ++  +   +     
Sbjct: 440 IVSITLVMMAVFVPVSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHK 499

Query: 829 K 829
           K
Sbjct: 500 K 500


>gi|295676210|ref|YP_003604734.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
 gi|295436053|gb|ADG15223.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
          Length = 1044

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 79/621 (12%), Positives = 174/621 (28%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I  +GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLVGLVALRFLPLSALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PDVMTSSVTAPLERQFGQMPSLNQMSSQSSAGSSIITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +++   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPIIT-LAITSKTLPLTQVQDLADTRLAQKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGQRPAIRIQANPRALAAYGLNLDDLRTTISNLNVNTPKGNF------DGPTRNYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++      +                      R        +I         G  
Sbjct: 229 INSNDQLTDADEYKSA--------------VVAYKSGRPVMLTDVASIVPGPENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    +++   L   L+          V          S    
Sbjct: 275 VNDTPAIILNVQRQPGANVIQVVDSIKALLPRLQQSLPAALEVEVVTDRTTTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELAMSVVLVVLVMYLFLANIYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   I 
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPHDSHRFEAKAHRFIDWVIA 514

Query: 539 ------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +   +  +  +F     + +   G IQ      + V  +
Sbjct: 515 RYAVALTWVLNRQRSTLVVAVLTLVLTGLLYVFIPKGFFPVQDTGVIQAITQMPQSVSFA 574

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    ++L    +   + + 
Sbjct: 575 SMAERQQALADQILKHPDVES 595



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    L G   +  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANIYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGDSALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAVVSLTLVP 483


>gi|215482386|ref|YP_002324568.1| Nodulation protein nolG precursor [Acinetobacter baumannii
           AB307-0294]
 gi|213985749|gb|ACJ56048.1| Nodulation protein nolG precursor [Acinetobacter baumannii
           AB307-0294]
          Length = 1001

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 63/601 (10%), Positives = 156/601 (25%), Gaps = 43/601 (7%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
             ++ FP+      +                   + V   +    ++  + +        
Sbjct: 1   MTVEEFPNIDFPFVV---------VTTQYAGASPEAVESDITKKLEDQINTISGIKQITS 51

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
              +  + +   F         A  V   +  V ++   +    ++         I+   
Sbjct: 52  RSSEGLSMVIAEFNLDTSSAIAAQDVRDKIAPVIAQFRDEIDTPIVQRYDPSSSPIMSVV 111

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
              +       + S  + ++ + Q+                 Q+  +  P +L+      
Sbjct: 112 FESNS--MSLAQLSSYVDKKIVPQLKTVSGVGNVNLLGDAKRQIRIKVHPEQLQSYGIGI 169

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
            ++       N          +        Q  V                          
Sbjct: 170 DQVINTLKNENIEVPAGTLQQKNSELVVQIQSKV--------------------IHPLGF 209

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
            D+          F      +    A +                   +  +    ++   
Sbjct: 210 GDLVIANKNGSPIFLKQVATVEDTQAELQSSAFYNGRTAVSVDILKSSDANVIQVVDKTY 269

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A         V   +      S      T    A L ++++ + +   +  ++
Sbjct: 270 QTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGAVLAVLIVLLFLGSFRSTVI 329

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              ++ + ++ TL  +   G ++ + ++  + L IGL +D  I+V E I       +   
Sbjct: 330 TGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDDAIVVRENIVRHTELGKDHV 389

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISI 506
            +   G       +  + +T +   + + F G   G     F +T+  ++LISMF + ++
Sbjct: 390 TAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGRFFYQFGVTVSTAVLISMFISFTL 449

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM--------RARFWGVGI-SILFS 557
              +        K K   +     +                    R RF  V I  +   
Sbjct: 450 DPMLSAHWKDPVKKKESRLQRFFNYISNLLDGLTHIYEKLLKLALRFRFITVIIAIVSLV 509

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           +                 KG I++         L   ++ L  +      F +       
Sbjct: 510 VALGLSKMIGTEFVPTPDKGEIRIQFETPVDSSLEYTQAKLHQVDQIIRQFPDVVSTYGV 569

Query: 618 L 618
           +
Sbjct: 570 V 570



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 74/218 (33%), Gaps = 8/218 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +             +  + ++K   ++      +        I   +       +  +
Sbjct: 251 VDILKSSDANVIQVVDKTYQTLEKLKAQMPAGLNYKVVADSSKGIRASIKDVVRTIIEGA 310

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+LI +     +   +    TL + +  TL F   FG   N+  + A+   IG  ++D
Sbjct: 311 VLAVLIVLLFLGSFRSTVITGLTLPITLLGTLTFIWAFGFSINMMTLLALSLSIGLLIDD 370

Query: 737 KVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
            +VV    R+N+  +T               E     + T++      LP+A  GG +  
Sbjct: 371 AIVV----RENIVRHTELGKDHVTAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGLIGR 426

Query: 796 ---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F + ++  ++++   S  +   +     D   K 
Sbjct: 427 FFYQFGVTVSTAVLISMFISFTLDPMLSAHWKDPVKKK 464



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 69/163 (42%), Gaps = 7/163 (4%)

Query: 669 GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +  + +S + + I +  +F  +      + +L L +        LF    NL ++  ++
Sbjct: 830 ALTAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLIGVFLALFLFRSTLNLFSIIGII 889

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            L+G    + +++ D ++   K     IS  D I ++    L   + T+ A  + ++P+A
Sbjct: 890 MLMGLVTKNAILLIDFIK---KAMEDGISRYDAILQAGKTRLRPILMTTSAMVMGMVPLA 946

Query: 788 VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +    GG      A  +  G++ +   ++ +   I  ++ D +
Sbjct: 947 LGLGEGGEQSAPMAHAVIGGVITSTLLTLVVVPVIFTYLDDLK 989


>gi|183599415|ref|ZP_02960908.1| hypothetical protein PROSTU_02890 [Providencia stuartii ATCC 25827]
 gi|188021659|gb|EDU59699.1| hypothetical protein PROSTU_02890 [Providencia stuartii ATCC 25827]
          Length = 1025

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 84/642 (13%), Positives = 174/642 (27%), Gaps = 40/642 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G L  +   +       +P       I++   L G          
Sbjct: 11  RPVATTLISVAISLCGALSFIFLPVAPLPQVDYP------VINVTASLPG--------AS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S    +  ITL F   +   N A +V   +   
Sbjct: 57  PETMASSIATPLERSLGSIAGISEMTSSSSLGRTTITLEFNLDKDINNAAREVQAAINAA 116

Query: 123 NSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + L      K     +   +  I++             E       +   +I   E   
Sbjct: 117 QTLLPSGMPSKPRYYKSNPSDAPIMILTLTSK--TMSTGEIYDIASTRLSQRIAQIEGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P+ L     +  K+       N  +          R       
Sbjct: 175 EVSVGGGSLPAVRVELNPTALFNQGVSLDKVRSAISSANVRQPQGYINNDDSRWQVQTND 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++  V+                       I                N+   +  V    
Sbjct: 235 ELKKAVD--------------------YQPIIVHYKEGNAVKLSDVANVKDSVQDVRAAG 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         +   +A  +   T+          +          V +        S   
Sbjct: 275 MSGGEPAILIVIRREAGANIIETVNRIRAELPDFQEMIPAAIDLKVAQDRTPTIRASLVE 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   LV++V+ + +  G+  L+   ++ +++I T   + L G +L   S+  + 
Sbjct: 335 VERALMIAIALVILVVLLFLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMALT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I          F +   G S    T+   +I+ +   + L    
Sbjct: 395 VATGFVVDDAIVVLENISRHIENGCKPFIAAVRGVSEVGFTVVSMSISLVAVFIPLLLME 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FAIT+  +I IS+  ++++   M   +++  K K  +   +   +L     
Sbjct: 455 GLVGRLFREFAITLATAIGISLVVSLTLTPMMCAHLLKRHKGKQAEKTSVIGGYLHRIQN 514

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                         S+L  + +   L  +            Q        V      S  
Sbjct: 515 GYGATLNWVLSHKRSVLAILFATIGLNIYLYIAIPKTFFPEQDTGRLLGFVRADQSISFQ 574

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +      Q  + +        +  G  V    +   +K 
Sbjct: 575 AMKEKMTRFMQQVNADPAVDSVTGFTGGSRVNSGSMFISLKP 616



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 6/146 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T     L G   N  ++ A+    G+ V+D +VV + + 
Sbjct: 353 FLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMALTVATGFVVDDAIVVLENI- 411

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +             + ++E     V  S++     +P+ +  G V      FAI +A
Sbjct: 412 --SRHIENGCKPFIAAVRGVSEVGFTVVSMSISLVAVFIPLLLMEGLVGRLFREFAITLA 469

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRA 828
             I ++   S+ +   +   +     
Sbjct: 470 TAIGISLVVSLTLTPMMCAHLLKRHK 495



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 91/217 (41%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +       +  ++K +T +   STI+ T     +I ++ ++  +  ++ + + 
Sbjct: 804  TIAFNIAEGYTLNDAISAIEKTMTTLGVPSTIRGTFAGTAQIFQDTLKSQLFLILAAIVT 863

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 864  VYLVLGILYESYIHPLTILSTLPSAGVGALLALELFDTPFSLIALIGIMLLIGIVKKNAI 923

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D            ++ R+ I ++        + T++AA    LP+A+    G  +  
Sbjct: 924  IMVD--FAIQAQRQHGLTAREAILRASLLRFRPILMTTLAAIFGALPLALGSGDGAELRQ 981

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   ++F    + L     R +  +
Sbjct: 982  PLGITIVGGLVMSQLLTLFTTPVVYLCFDQLRQRYTK 1018



 Score = 45.8 bits (106), Expect = 0.029,   Method: Composition-based stats.
 Identities = 51/530 (9%), Positives = 155/530 (29%), Gaps = 44/530 (8%)

Query: 2    RNNPWLVILYSMICCIGLLIALP-NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            + +   ++  ++   I L IA+P  F P+    R    +  ++            +  + 
Sbjct: 527  KRSVLAILFATIGLNIYLYIAIPKTFFPEQDTGRLLGFVRADQ-----------SISFQA 575

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             ++       Q+ +D     +          R     + +S      ++  A+ V   L+
Sbjct: 576  MKEKMTRFMQQVNADPAVDSVTGF---TGGSRVNSGSMFISLKPIDERKESANAVINRLR 632

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +K                 + ++  Q+               ++   ++ +   E  
Sbjct: 633  AKLAKEP------------GANLFMMPVQDIRVGGRQAHSSYQFSLLADELNALREWEPA 680

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +++  +    +         +  ++  T  +    ++  +      +    F +      
Sbjct: 681  VRKAIAELPQVTDVNSDKEDKGAEMAITYDRDLMAQLGIDVRAANDLLNNAFGQRQISTI 740

Query: 241  YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            Y   ++ ++        T +        V++   D +    F      N           
Sbjct: 741  YEPMNQYKVVMEVAPEYTQDVSSLDKMFVINSHGDAIPLSYFARWQPAN----------A 790

Query: 301  RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +        A  +    I+  +T+  A                                
Sbjct: 791  PLSVNHQGLSASSTIAFNIAEGYTLNDAISAIEKTMTTLGVPSTIRGTFAGTAQIFQDTL 850

Query: 361  IYKGTCAIVAGLVLIVLFMIVL--YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
              +    + A + + ++  I+   Y     +   ++    +  L  L L     +L ++ 
Sbjct: 851  KSQLFLILAAIVTVYLVLGILYESYIHPLTI-LSTLPSAGVGALLALELFDTPFSLIALI 909

Query: 419  GIVLGIGLAVDSNILVNER-IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            GI+L IG+   + I++ +  I+ + +   +   ++       +  I  + + A+   + L
Sbjct: 910  GIMLLIGIVKKNAIIMVDFAIQAQRQHGLTAREAILRASLLRFRPILMTTLAAIFGALPL 969

Query: 478  FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                  G    +   IT+   +++S    +     + +   + ++  +  
Sbjct: 970  ALGSGDGAELRQPLGITIVGGLVMSQLLTLFTTPVVYLCFDQLRQRYTKK 1019


>gi|94309457|ref|YP_582667.1| acriflavin resistance protein [Cupriavidus metallidurans CH34]
 gi|93353309|gb|ABF07398.1| multidrug efflux system, subunit C [Cupriavidus metallidurans CH34]
          Length = 1100

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/652 (10%), Positives = 170/652 (26%), Gaps = 69/652 (10%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+            +   P                     L    
Sbjct: 10  RPVATALLTIGILLAGIAA-----FRLLPVSPLPQVDFPTI---------SVSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +      ++TL F  SR  +  A  V   +   
Sbjct: 56  PETMAATVATPLERALGTIAGVTEITSNSSLGSTRVTLQFDLSRNIDGAARDVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L      N          + ++    +        +           ++   E   Q
Sbjct: 116 RATLPTSLPNNPTYRKVNPADAPIMI-IGLTSQTMSRGQLYDAASTILAQKLSQVEGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG------------- 229
                  L  +  E +P+ L +   +   +       N ++   +               
Sbjct: 175 VTIGGSSLPAVRVELNPTSLNKYGISLEDVRNTISATNANRPLGVLENSNNAWQVYANDQ 234

Query: 230 -----------------VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
                              +   S G            G             T       
Sbjct: 235 AMAAKDYMPLIIRYATPGTYSSASAGALIASTANAAAGGNVSTKTVNGVTTTTITTSSGT 294

Query: 273 SF--------------DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQ 318
           +                   A         N+   +  + +            + +    
Sbjct: 295 TTITTGATGGSNGAKGPNGFAVPIRLQDVANVVDSVQDIRNAGSANGKPSVLLVLNRSPG 354

Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378
            +   T++    +   L           V          S    + T  I   LV++V+F
Sbjct: 355 ANIIETVDRVNDILPQLGKMIPAAISMDVMMDRTPTIRASLREVEQTLIISVALVVMVVF 414

Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           + +   +  L+   ++ ++++ T +++ L G +L   S+  + +  G  VD  I+V E I
Sbjct: 415 LFLRNVRATLIPSVAVPVSLVGTFSVMYLAGFSLNNLSLMALTIATGFVVDDAIVVLENI 474

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLS 495
                +      +   G      T+   +++ +   + L   G   G   + FAIT+ ++
Sbjct: 475 SRHIEEGMKPLAAALRGAREVGFTVLSMSLSLIAVFIPLLLMGGIVGRLFQEFAITLSVA 534

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF-------MRARFW 548
           IL+S+  +++    M   ++R    +S      +   +                  +   
Sbjct: 535 ILVSLVVSLTTTPMMCARLLRPVHEESQGRFHRATEHVFTWMQQAYARTLGAALRHSTLV 594

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
            + +    ++     +      +     G +   + A++      +R+ L++
Sbjct: 595 WIVLLATVALNVWLYVIVPKGFFPQQDTGRLIGFIRADQATSFQAMRTKLDN 646



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 81/243 (33%), Gaps = 13/243 (5%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           N       ++     +                 V L             ++ V   + ++
Sbjct: 312 NGFAVPIRLQDVANVVDSVQDIRNAGSANGKPSVLLVLNRSPGANIIETVDRVNDILPQL 371

Query: 646 VPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             +     +  V    +  +          + + ++ + M++++++R      L     +
Sbjct: 372 GKMIPAAISMDVMMDRTPTIRASLREVEQTLIISVALVVMVVFLFLR-NVRATLIPSVAV 430

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +     
Sbjct: 431 PVSLVGTFSVMYLAGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHIEEGMKPLAA 487

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             +   E     +  S++     +P+ + GG V      FAI ++  I+V+   S+    
Sbjct: 488 ALRGAREVGFTVLSMSLSLIAVFIPLLLMGGIVGRLFQEFAITLSVAILVSLVVSL-TTT 546

Query: 818 PIL 820
           P++
Sbjct: 547 PMM 549



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/121 (22%), Positives = 54/121 (44%), Gaps = 5/121 (4%)

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            F  EF++ A+  V+ LIG    + +++ D            +S RD I ++        +
Sbjct: 963  FKTEFSIIALIGVILLIGIVKKNAIMMID--FAIDAERRDGLSPRDAIYRACLLRFRPIM 1020

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+MAA +  +P+A+    G  +     I +  G++V+   +++    + L +  WR K 
Sbjct: 1021 MTTMAAMLGAIPLALGHGDGAELRAPLGISIVGGLLVSQLLTLYTTPVVYLTLDRWRLKV 1080

Query: 831  A 831
             
Sbjct: 1081 K 1081


>gi|77919838|ref|YP_357653.1| AcrB/AcrD/AcrF cation/multidrug efflux pump [Pelobacter
           carbinolicus DSM 2380]
 gi|77545921|gb|ABA89483.1| AcrB/AcrD/AcrF cation/multidrug efflux pump [Pelobacter
           carbinolicus DSM 2380]
          Length = 1030

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 71/634 (11%), Positives = 166/634 (26%), Gaps = 46/634 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL       + Q       +                   V    
Sbjct: 9   RRPVLALVVSLLITIAGLQAIRTLNVRQYPRSENAAIT--------------VTTVYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+    +   +             +  + I +    +        +++  +  
Sbjct: 55  SADLVRGFITTPLERAIAAADGIDYIESQSAKGTSTIKVRLKLNYDSTKALAEISSKVDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  + +  +L   +          +    V+    E +  ++R    ++   E   
Sbjct: 115 VRNDLPPEAEVPILNIESADSEFASAYLSFSSDVLLQ-NEITDYLMRVVQPRLSAVEGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+     T  ++       N                 G   
Sbjct: 174 RAEILGARTFAMRIWLKPDRMAAFHITPMQVREALAANNYLSA------------VGQTK 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++          F          +   +            ++           
Sbjct: 222 GALIQVNLTADTNLQTVEEFRH--------LVIHQQDDAIVRLADIADVVLGAEDYDTEV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +    I    +    +R          +          +   
Sbjct: 274 RFSGQTAVFMGIWALPNANSLDVIRRIRVEMESIRKDLPTGLEGRLAYDATDYINNAIHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  LV   +I L++I  + L+   G T+ L ++  IV
Sbjct: 334 VIETLGDTLIIVILVIFLFLGSMRSVLVPVVAIPLSLIGAVFLMQSFGFTVNLLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +    R+ QS   +  +G       I    IT       +   G
Sbjct: 394 LSVGLVVDDAIVVVENVERHLREGQSPMQAAILGARELVGPIIAMTITLAAVYAPIGLQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  ++ IS   A+++   M   +        +  +            
Sbjct: 454 GLTGALFREFAFTLAGAVTISGVVALTLSPMMSAQL--------LRPDIEEHGLAARIAR 505

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
             + +R  +  +  + L    ++  ++       I       + +       +     + 
Sbjct: 506 TFERLRNGYARLLDATLAMRPAVYTVWIVVGLLSIPMYMMSPVELAPTEDQGVIFGILDA 565

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +    D + +      +                
Sbjct: 566 PANATLDQTSRYAAAANDVFFSAPETEFTFQITN 599



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 86/244 (35%), Gaps = 7/244 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + +    +  V L+ +   +   +  D   +       F+        +S+   R + +
Sbjct: 243 HLVIHQQDDAIVRLADIADVVLGAEDYDTEVRFSGQTAVFMGIWALPNANSLDVIRRIRV 302

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGA 696
             + I + +P                  I + I  +  + I +++ I++        L  
Sbjct: 303 EMESIRKDLPTGLEGRLAYDATDYINNAIHEVIETLGDTLIIVILVIFLFLGSMRSVLVP 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           +  + L +   +     FG   NL  + A++  +G  V+D +VV + +    +      S
Sbjct: 363 VVAIPLSLIGAVFLMQSFGFTVNLLTLLAIVLSVGLVVDDAIVVVENV---ERHLREGQS 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                     E +G  +  ++       P+ + G   G++   FA  +A  + ++   ++
Sbjct: 420 PMQAAILGARELVGPIIAMTITLAAVYAPIGLQGGLTGALFREFAFTLAGAVTISGVVAL 479

Query: 814 FIAA 817
            ++ 
Sbjct: 480 TLSP 483



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 61/181 (33%), Gaps = 25/181 (13%)

Query: 672  GVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI-------------- 716
               ++ I + + +  +F  +      +   +       G      +              
Sbjct: 847  AFSLAVILIFLVLAAQFNSFRDPFVILFGSVP--LAMFGAMIFTFLKMPDPNVPFWTNGW 904

Query: 717  --EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                N+ +   ++TL+G    + +++ +      +L     S  + +  +    L   + 
Sbjct: 905  TTTLNIYSQVGLVTLVGLVAKNGILIVEFAN---QLQLQGHSKLEAVRGASLTRLRPILM 961

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS+A      P+ +    G +   S  + +  G+ V    ++FI   I + +    A++ 
Sbjct: 962  TSVATIAGHFPLTLVTGAGAAARNSIGLVLVGGMFVGTIFTLFIVPSIYMLVARDHARDI 1021

Query: 832  R 832
            +
Sbjct: 1022 K 1022


>gi|254524418|ref|ZP_05136473.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
 gi|219722009|gb|EED40534.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
          Length = 1173

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 154/573 (26%), Gaps = 50/573 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + +    +   GL+      L    ++  P                         
Sbjct: 31  RRRVTIAMCTVTLLLFGLIA-----LGNLKVNLLPDLSYPTLT---------VRTEYTGS 76

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 77  APTEIETLITQPVEEAVGVVKNLRKLKSVSRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 136

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +N  L ++ K  +L+        I+        +  +    I                ++
Sbjct: 137 LN--LPLEAKAPVLLRFNPSTEPIMRLVLSSKTAPASDADAIRELTGLRRYADEDLKKKL 194

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 195 EPVSGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDTVIKRLKDENINISGGRLEEGSQR 254

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE------------------ 276
                     D  EI  + +    +N            +                     
Sbjct: 255 FLVRTVNQFADLEEIRNLLVTTQGSNGSAADSALQQMFNIAASTGSAAAIAAASAAQSAS 314

Query: 277 --------MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                                + +          L      +     +   +   T E  
Sbjct: 315 SGSGSSVVANGVPVRLKDVATVRQGYKEREAVIRLGGKESVELAIYKEGDANTVSTAEAL 374

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                 ++            E        + +  K    I   L ++++F+ +  G    
Sbjct: 375 RKRLEQIKGTFPADVEMTTIEDQSRFIEHAIADVKKDAVIGGLLAILIIFLFLRDGWSTF 434

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           V   S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +   +
Sbjct: 435 VISLSLPVSIIATFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGMGI 494

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             +   G       +  S +T +   + L F  G A + F     L++ I++  ++ +  
Sbjct: 495 LQAAIAGTREVSMAVVASTLTTIAVFLPLVFVDGIAGQLF-RDQALTVAIAIAISLLVSM 553

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
            ++  +   K    +     +           Q
Sbjct: 554 TLIPMLSSLKGRPPLAFPEEAPNEPWQPQSRWQ 586



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 7/217 (3%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +  +           + + +++          +   E     I   +       
Sbjct: 353 ESVELAIYKEGDANTVSTAEALRKRLEQIKGTFPADVEMTTIEDQSRFIEHAIADVKKDA 412

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           VI   +A+LI        +       +L + I  T  F    G+  N+ ++  +    G 
Sbjct: 413 VIGGLLAILIIFLFLRDGWSTFVISLSLPVSIIATFFFMGQLGLSLNVMSLGGLALATGL 472

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            V+D +VV + +    K     +           E     V +++      LP+      
Sbjct: 473 VVDDSIVVLESI---AKARERGMGILQAAIAGTREVSMAVVASTLTTIAVFLPLVFVDGI 529

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G +    A+ +A  I ++   S+    P+L  +   
Sbjct: 530 AGQLFRDQALTVAIAIAISLLVSM-TLIPMLSSLKGR 565



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 75/213 (35%), Gaps = 8/213 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +  +       +    ++  +  +     D      + E+ +    + +      +  
Sbjct: 912  DAVADVVATTGPSEIHRADQTRVAVVSANLRDIDLGAAMREVQQMVAEQPLGAGVGLHIG 971

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++   +  I    ++   + + +  +F+        + T+ L +   +    L 
Sbjct: 972  GQGEELAQA-AKSLIFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLALVGAILALMLT 1030

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+G    + +++ D++    +L    ++  + + +     L   + 
Sbjct: 1031 GKPISVVVFIGLILLVGLVTKNAIILIDKVN---QLREAGVAKHEALVEGARSRLRPIIM 1087

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            T++      LP+AV    G  V    AI +  G
Sbjct: 1088 TTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1120


>gi|188586556|ref|YP_001918101.1| acriflavin resistance protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351243|gb|ACB85513.1| acriflavin resistance protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 1040

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 82/675 (12%), Positives = 189/675 (28%), Gaps = 48/675 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    +++   +I  +  +        +  +D +P                      E 
Sbjct: 8   LKRPVTIIMAVVIILLLATVS-----FSRIPIDLYPDMELPVLF---------VQTDYEG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    +E  S +          +Q  ++I + F      +  A      + 
Sbjct: 54  AGPHEVENMVSRPLEETLSTVDNLSQITSISQQDSSQIIMEFDWGTDMDFAALDTRELID 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +L  D     ++      + I+  Q  I+       E S         Q+   E  
Sbjct: 114 MIGEQLPDDAGDPTVMQLDPDMMPIL--QVGINAPEMDLQEISELAEGTIQTQVERIEGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLL-GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            +      +  ++    DP  L      +   +       N             + +   
Sbjct: 172 GEVNVMGGVEREIKIHVDPYLLSSYQEVSYENIREAIAANNMDISAGEIRDGDGKYAIRT 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
               ED  EI  I +                       G           +   +  +  
Sbjct: 232 IGQFEDPDEIKDIQIGV--------------------EGESPVKLGDVARVEDTVEDMEP 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +            ++  +     +      A L           +          S 
Sbjct: 272 LSRINQEPSVSLGIRNQSDANAVRVAQDVRAELANLEESLPGNVQFEIVTDQSTFIEESI 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   I A L +IVL++ +   +  L+  F+I +++I T  L+   G T+ L ++ G
Sbjct: 332 DSIIEMGIIGAILAMIVLWLFLGNFRTTLIIGFAIPISIISTFNLMYFQGYTMNLITMGG 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + LGIG+ VDS+I++ E I  +  +  S +     G       I  + +T++ A +   +
Sbjct: 392 LTLGIGMVVDSSIILLENIFRKREQGLSSYEGALQGSKEISGAIIAATLTSMAAFLPAAY 451

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAM--------MIFIIRYKKMKSIDINPL 528
                G      A T+  ++  S+  A+++V  +        + F  +    + +D    
Sbjct: 452 TEGIAGIIFEPMAWTVVFALFASLLVALTLVPMLTDKVMGEGVDFNRKSYLPRKMDQGLQ 511

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +     +     V    L  I  +         +  +  G I + +     
Sbjct: 512 WLTNKYGQLVDWVLSKRFVVIVSFIGLMIITVLIFPLMGFEFFPPEDSGEITVDIQYPVG 571

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             L     NL  L+      +  +                 +++  + ++ +   +    
Sbjct: 572 TPLDTTSDNLLELEEEISQVEGVETVFATAGGGGDFVVGGDSRSGTINVIMEDDHQRTTF 631

Query: 649 STIQNTEIVGPKISR 663
             +     + P+   
Sbjct: 632 EVVDEIRGLIPERGG 646



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 94/265 (35%), Gaps = 7/265 (2%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           + T G     D    IQ+GV    PV L  V    ++++  +   +        L     
Sbjct: 229 IRTIGQFEDPDEIKDIQIGVEGESPVKLGDVARVEDTVEDMEPLSRINQEPSVSLGIRNQ 288

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
              ++V   + +      + E +P +              E I   I   II AI  +I 
Sbjct: 289 SDANAVRVAQDVRAELANLEESLPGNVQFEIVTDQSTFIEESIDSIIEMGIIGAILAMIV 348

Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           +W+    +   L     + + I  T       G   NL  +  +   IG  V+  +++ +
Sbjct: 349 LWLFLGNFRTTLIIGFAIPISIISTFNLMYFQGYTMNLITMGGLTLGIGMVVDSSIILLE 408

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI-PM 801
            +    +     +S  +   +   E  G  +  ++ +  + LP A      I      PM
Sbjct: 409 NI---FRKREQGLSSYEGALQGSKEISGAIIAATLTSMAAFLPAAY--TEGIAGIIFEPM 463

Query: 802 AFGIVVAASSSIFIAAPILLFIYDW 826
           A+ +V A  +S+ +A  ++  + D 
Sbjct: 464 AWTVVFALFASLLVALTLVPMLTDK 488



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 84/257 (32%), Gaps = 17/257 (6%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V       L +  +  +  +   +       +       +            +E+    
Sbjct: 783  QVPLEEVASLEMAETPRQIEREDRVRTGTVGVQIEGRDIGRTAGDIREVLDESIELPPDY 842

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
              +      +      G  ++  L    +  V          +  +F+   +    + T+
Sbjct: 843  TMDFGGTYEMMMESFEGLGLALILAVLLVYMV----------MAAQFESLLYPFIVMFTI 892

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L +   +    + G   ++ A   V+ L G  VN+ +V+ D +  N   +    +  + 
Sbjct: 893  PLALIGVILALLVTGHSLSIVAFMGVIMLAGIVVNNGIVMVDFI--NKLYHEQGYNRIEA 950

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I  +    L   + T +   + +LPMA     G  V    AI +  G+ V+   ++ +  
Sbjct: 951  IVTAGKIRLRPILMTVLTTILGMLPMASGAGEGAEVRAPMAIAIIGGLAVSTIITLVLIP 1010

Query: 818  PILLFIYDWRAK-NARI 833
             +     D R + ++++
Sbjct: 1011 VVYSLFDDLRLRFHSKL 1027


>gi|46578854|ref|YP_009662.1| AcrB/AcrD/AcrF family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448266|gb|AAS94921.1| AcrB/AcrD/AcrF family protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232717|gb|ADP85571.1| acriflavin resistance protein [Desulfovibrio vulgaris RCH1]
          Length = 1041

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 66/584 (11%), Positives = 163/584 (27%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +   G++        Q  +   P+                    L   
Sbjct: 9   RRPVTTTLVMLGLLFFGVM-----GYRQLPVSDLPNVDFPTIQ---------VRAQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + +   +    +   + +        +  Q   +IT+ F  SR  +  A  V   +  
Sbjct: 55  DPETMASSVAAPLERQFATIAGIDSMSSTNTQGNTRITIQFNLSRDIDAAAQDVQAAIST 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  D                +L    +        + +     +    I +     
Sbjct: 115 AQRKLPSDLTTPPSYQKVNPADQPILF-LALTSPTLPLSKVNEYAETRIGQTISMVSGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  + DP RL+ L     ++S      N++                   
Sbjct: 174 QVNVYGAKKYAVRVQVDPRRLKALGLGIDEVSAAVDKANSNLPTGTLQGEHTASIIKASG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +                 +   +       
Sbjct: 234 QL--------------------YDAAAYRPVVVAYRNGAPVRLEELGRVVDSVEQDRILN 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    +E+   L               +      +   S + 
Sbjct: 274 WFNDERGIVLAVQRQPGTNTVEVVESIKRLLPEFERQLPAAVKLNILFDRSESIKASVAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV++V+F+ +      ++   ++ ++V++T A + ++G +L   S+  + 
Sbjct: 334 VKFTLVLTVCLVVLVIFLFLRSLSATVIPSLALPMSVVVTFAAMHMMGFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E I       ++   +   G      TI    ++     + + F G
Sbjct: 394 LAVGFVVDDAIVMLENIVRHMEMGKTPLRAALDGAREIGFTIISMTVSLAAVFIPVLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+ + ++IL+S F ++S+   +    ++    +       +      + +
Sbjct: 454 GIVGRLFHEFAVVITVAILLSGFVSLSLTPMLCALFLKPHVGQRRHGRVYNALETFFETL 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              + R+  + +    +    S+ +L      +    KG +   
Sbjct: 514 HRGYERSLRFTMRHHRMTFGLSMVVLGVTVWLFAAMPKGFLPSE 557



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 54/155 (34%), Gaps = 9/155 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +     L + +  T     + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 351 LFLRSLSATVIPSLALPMSVVVTFAAMHMMGFSLDNLSLMALTLAVGFVVDDAIVMLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      +          E     +  +++     +P+   GG V      FA+ +
Sbjct: 411 ---VRHMEMGKTPLRAALDGAREIGFTIISMTVSLAAVFIPVLFMGGIVGRLFHEFAVVI 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYD---WRAKNARI 833
              I+++   S+ +   +          + ++ R+
Sbjct: 468 TVAILLSGFVSLSLTPMLCALFLKPHVGQRRHGRV 502



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 85/250 (34%), Gaps = 15/250 (6%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V L  + +   S+    ++             L+     S A   V  +  + +      
Sbjct: 782  VPLDTIATLRPSVGPLAVNHSGQFPSVTLSFNLRPGVSLSEAVQAVEGIAGQYLPPTATG 841

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDIT 705
            +     +     +           +++    ++IYI +      +   L  ++ L     
Sbjct: 842  TFQGTAQAFQSSMQGM-------AMLLFMAVVVIYIVLGVLYESFIHPLTILSGLPSAGL 894

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L    +FGI+ NL A   ++ LIG    + +++ D   +         S  + I +  
Sbjct: 895  GALVTLFIFGIDLNLYAFVGIIMLIGIVKKNAIMMIDFAVE--AERKNGASPYEAILQGC 952

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   + T+MAA +  LP+AV    G        + +  G++V+   +++I      +
Sbjct: 953  LIRFRPIMMTTMAALMGTLPIAVGWGPGAEARQPLGLAVVGGLLVSQLLTLYITPVYYTY 1012

Query: 823  IYDWRAKNAR 832
            +     +  R
Sbjct: 1013 LDALSRRIKR 1022


>gi|315187252|gb|EFU21008.1| acriflavin resistance protein [Spirochaeta thermophila DSM 6578]
          Length = 1063

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 85/631 (13%), Positives = 186/631 (29%), Gaps = 47/631 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + I+++++   GL            +D +P   P   +                  
Sbjct: 10  RPTTIAIVFALLVGFGLYTI-----TNIAIDLYPEITPPVLV---------VSTSYAGAG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    + + S +        +  +  + + L F         A+ V   L+ V
Sbjct: 56  PEEVEKVITRPLESVLSNVTNLKRITSTSSEGSSMLILEFTYGTDMAEAANSVRDNLEFV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  +    ++       I I+      ++      + +         ++  +E    
Sbjct: 116 KDALPEEAGTPMIFKFNPSIIPILRLTVEGNRSQEELRKLAE---DYIAPRLEQTEGVAM 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   +  +  +    RL     T  +++      N    G       +         
Sbjct: 173 ASVSGGRIPVVRVDVHLDRLEAYGITLTQIATMLRTQNVQLAGGRITENRINYLIRTAGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   EIS   +   T+       + V  +                ++            
Sbjct: 233 FQTIEEISRAVVGYKTSQTSGGIPRVVPVLLR-----------DVADVSMGYRSTDTMVF 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            ++  +     + A    A ++          +      +   + S  
Sbjct: 282 VNGKPSVSIAVLKQSGTNSVQVADRAKERIAQIQRDLPRDVKITITRDTTESIRAALSQV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L ++VLF+ +   K  L+   +I ++V++ LA L   G TL L ++ G+ L
Sbjct: 342 SSSALNGAILAMVVLFLFLRSVKPTLIVGLAIPISVVIALAALYFAGITLNLMTLTGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD++I++ E I     K      S  +G     + I  S +T +   + +  F  
Sbjct: 402 GIGMLVDNSIVILENIFRYREKGAKPHISAILGTQEMITAITASTLTTVAVFLPIAIFQS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID------------ 524
                G      A T+ +S+L S+  A+ +V  +    +     K               
Sbjct: 462 ELETIGELFADLAFTVVISLLSSLAVALLLVPVLSSHYLPLTTRKEKPLRGILKGLDGIL 521

Query: 525 -INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    +    ++      +   + I  LF + ++ +               + + V
Sbjct: 522 ARFFSWLEKVYGRGLSWTLRHRKTTILAIIALFILAAVQIPRVGFEYLPEQEADSVSVQV 581

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                  + V R  LE LQ    S      +
Sbjct: 582 ELPLGTSVEVTRGVLEQLQEIVKSEVEGYQD 612



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 61/204 (29%), Gaps = 9/204 (4%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           + F N     +  V  Q          R  E + +   ++     I  T      I   L
Sbjct: 279 MVFVNGKPSVSIAVLKQSGTNSVQVADRAKERIAQIQRDLPRDVKITITRDTTESIRAAL 338

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            +     +  + +AM++           L     + + +   L      GI  NL  +  
Sbjct: 339 SQVSSSALNGAILAMVVLFLFLRSVKPTLIVGLAIPISVVIALAALYFAGITLNLMTLTG 398

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   IG  V++ +V+ + +    +                 E +     +++      LP
Sbjct: 399 LALGIGMLVDNSIVILENI---FRYREKGAKPHISAILGTQEMITAITASTLTTVAVFLP 455

Query: 786 MAVWG------GSVIGSFAIPMAF 803
           +A++       G +    A  +  
Sbjct: 456 IAIFQSELETIGELFADLAFTVVI 479



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 70/169 (41%), Gaps = 7/169 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             K ++ ++++   +   +  +F+ +      + T+ L +   +G + L G  F+L     
Sbjct: 876  TKFVIILLVAVFLVFGIMASQFESFLDPFIILFTIPLSLIGIVGIYLLTGEIFSLFTAVG 935

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L G  VN+ +V+ D       L   ++   D   ++    L   + T++   + + P
Sbjct: 936  LVILAGIVVNNGIVLVD---YTNLLRKRNLPLFDACVEAGKNRLRPVLMTTLTTVLGLTP 992

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +A     G S+I   A  +  G+ V+   ++F+   I      +  K  
Sbjct: 993  LAFTQGEGMSLIQPIAQTVVGGLSVSTLFTLFLIPVIYSIFNQFSEKRK 1041


>gi|212212495|ref|YP_002303431.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuG_Q212]
 gi|212010905|gb|ACJ18286.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuG_Q212]
          Length = 1019

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 74/602 (12%), Positives = 174/602 (28%), Gaps = 44/602 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I  +GL       + +  + ++P                          
Sbjct: 13  RPVLAIVVSLFIFILGL-----RAITEMEVRQYPKMNNTLIT---------ISTAYPGAP 58

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              + GF+    ++  +  +       +  Q  + I +    +         +   +  V
Sbjct: 59  ASLIEGFITTRLEKSIAGAEGIDYMTSTSTQGVSTINVFIKLNFDPNVAFTDIMSKVAQV 118

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  + +  ++   T  + +++    + DQ+ S   + S  + R    +I       Q
Sbjct: 119 QNDLPRESQLPVIQKLTGTQTALMYISFSSDQMSSE--QISDYLNRVVQPKIETVFGVSQ 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +  R+  L  T   ++   +  N                D     
Sbjct: 177 AEILGGQTFAMRVWLNTKRMAALNVTPTDVTQALINNNFQSAAGQTK------GDFITLY 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++ K +I                 +   ++   E+            +            
Sbjct: 231 IKAKTDIG--------------DKQAFENLVIKEVNGTLIRIRDIGRVELGAEDYDSSVY 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +          +     +    I     +   L     P   + V          S    
Sbjct: 277 MNGKSAIFVAVNTTPTANPLSVIANVKKILPDLEKEYPPSLHSKVVYDATEYIQASIYEV 336

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +V++V+F+ +   +  ++   +I L++I    L+  LG +L L ++  +VL
Sbjct: 337 IRTIFEATLIVIVVIFLFLGSIRTVVIPVITIPLSLIGVCFLMWFLGYSLNLLTLLSMVL 396

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
            IGL VD  I+V E +     +    F +   G       I    +T       + F   
Sbjct: 397 AIGLVVDDAIVVVENVYRHIEEGMDGFHAAIRGAREIAFPIISMTLTLAAVYAPIGFMTG 456

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFFLI 534
             G     FA T+  ++++S   A+++   M    +     K      ID +        
Sbjct: 457 LTGALFTEFAFTLAGAVIVSGIIALTLSPMMCSKFLNQNIGKQRYVQFIDRSFERLKQFY 516

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +           +    + + C I  + T       + +G + +   A +  ++  V
Sbjct: 517 SRRLHGVLNHRFLMVLLAVAVLASCFIFYMNTTSELAPEEDQGALFVQAQAPQYANIDYV 576

Query: 595 RS 596
            +
Sbjct: 577 EA 578



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 84/242 (34%), Gaps = 8/242 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L +L   +I+ Q         +              + E +         +     +   
Sbjct: 778  LSTLVKMNITKQPNLLSHFQQLNSAQIDAVLAPGHTMGEALTYLEQTANKVLARDMSYDF 837

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALF 714
            G ++ + +     + V      ++IY+ +      +      + ++ + I   L F  L 
Sbjct: 838  GGQMRQFVQEGQALVVTFFLAIIIIYLVLAAQFESFRDPFVILISVPMSICGALIFLNLG 897

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                N+     ++TLIG      +++ +    N       +S R+ I+KS    L   + 
Sbjct: 898  LATINIYTQIGLVTLIGLISKHGILMVE--FANKLQEEEGLSVREAIEKSAAIRLRPILM 955

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+ A  + V+P+ +    G        + +A G+++    ++F+   + L I        
Sbjct: 956  TTAAMVLGVVPLILATGAGAVSRFDIGLVIATGMLIGTMFTLFVVPTMYLLIAKKHQPLR 1015

Query: 832  RI 833
            ++
Sbjct: 1016 KV 1017



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 6/239 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V         + R  L +       + N        V              V +++   
Sbjct: 250 EVNGTLIRIRDIGRVELGAEDYDSSVYMNGKSAIFVAVNTTPTANPLSVIANVKKILPDL 309

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             E  P    +        I   +          + I +++           +  + T+ 
Sbjct: 310 EKEYPPSLHSKVVYDATEYIQASIYEVIRTIFEATLIVIVVIFLFLGSIRTVVIPVITIP 369

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +          G   NL  + +++  IG  V+D +VV + +    +     +      
Sbjct: 370 LSLIGVCFLMWFLGYSLNLLTLLSMVLAIGLVVDDAIVVVENV---YRHIEEGMDGFHAA 426

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +   E     +  ++       P+       G++   FA  +A  ++V+   ++ ++ 
Sbjct: 427 IRGAREIAFPIISMTLTLAAVYAPIGFMTGLTGALFTEFAFTLAGAVIVSGIIALTLSP 485


>gi|29654132|ref|NP_819824.1| AcrB/AcrD/AcrF family transporter [Coxiella burnetii RSA 493]
 gi|29541398|gb|AAO90338.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           RSA 493]
          Length = 1012

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 80/615 (13%), Positives = 172/615 (27%), Gaps = 42/615 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L  ++  +G++        +  L  FP                      +  
Sbjct: 9   RQPVLAIVLSLILVVLGVVA-----FQRLELRFFPKLELPILT---------VATTYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S +        +     + +T+ F      E  A  V   +  
Sbjct: 55  SAQLMESQVTTQIENALSGVDHIASISSTSYPGSSYVTVLFQLGGNFEEEASAVRDKVFA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  +     +   T+    +             + +    + R     +       
Sbjct: 115 IRDQLPPNANPPTITVGTKGNPVL---GIGFIDPQKSSADIRDYVERAVQPALRQLSGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    + S++     T   +       N               S  +  
Sbjct: 172 EVDILGASDYAMRIWLNASKMVAHQVTVTDVKNALTANNIYFPAGSIQEPKRNYSIVSHT 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D                          I  +  G                ++     
Sbjct: 232 QLKDATA-------------------FGNIIIKNNDGGTVRLNDIGHAELGYRSLYEAPM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      + +     + +            A ++    P     V          S   
Sbjct: 273 RINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASVNYDASTFLKSSIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV+ V+F+ +   +   +   +I +++I   A + L G T+   S+ GIV
Sbjct: 333 TFYAMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKLFGFTINTMSLLGIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I     +  + F +   G       I    +T +     + F  
Sbjct: 393 LAIGLVVDDAIVMLENIHRHIEEGMTPFQAAIKGSREISFAIIAMALTLVAVYAPVGFVQ 452

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA T+  +++IS F A+++   M   I+  +   S     + R F      
Sbjct: 453 GFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKDSRLTIIIDRAFSQLTGF 512

Query: 539 AIQFMRA---RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +F++    +       +L       +LF    +  I  +    + V    P   S+  
Sbjct: 513 YQRFLKFALNKRRLFIAGLLAIAGVGYVLFISLPSELIPKEDIGLIQVSVTSPSGASLNY 572

Query: 596 SNLESLQIGDISFQN 610
           +N  + Q+  I  QN
Sbjct: 573 TNQYAEQVEKIIQQN 587



 Score = 85.5 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 82/243 (33%), Gaps = 7/243 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + L    + +   +        L+    Q  + V     ++     I + +P     + 
Sbjct: 259 HAELGYRSLYEAPMRINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASV 318

Query: 655 EIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
                   +  I +    +     + + +          A   I T+ + +     F  L
Sbjct: 319 NYDASTFLKSSIEETFYAMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG   N  ++  ++  IG  V+D +V+ + +    +     ++      K   E     +
Sbjct: 379 FGFTINTMSLLGIVLAIGLVVDDAIVMLENIH---RHIEEGMTPFQAAIKGSREISFAII 435

Query: 774 YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++       P+     +   +   FA  +A  +V++A  ++ ++  +   I   R K+
Sbjct: 436 AMALTLVAVYAPVGFVQGFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKD 495

Query: 831 ARI 833
           +R+
Sbjct: 496 SRL 498



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 88/274 (32%), Gaps = 11/274 (4%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            +         DF    +L V +N   D +   S   S  I            +F      
Sbjct: 743  IVQMDKQDLTDFNALKKLYVHSNNKTDANKGNSIPVSSLIDLTPTVGQGSFTHFNRFRSG 802

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLI 682
                 +A       V   I   VP     +        + + ++     + I  +  + I
Sbjct: 803  TISARLAPGYSESQVIDYIKAHVPFVMTSDVHYAFSGKAAQFLQSSKSMIGIILMSLIFI 862

Query: 683  YIWIRFKWYFALGA-ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVV 739
            Y+ +  ++   L   +  L + +    G  +L   G   ++ +   ++TLIG      ++
Sbjct: 863  YLVLSAQFGSFLDPFVILLAVPLCIVGGLLSLKLTGGTLSIYSQIGLVTLIGMISKHGIL 922

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GS 796
            +   +     L    ++ ++ I +     L   + T++A     LP+A+  G   I    
Sbjct: 923  ITQFIND---LRKQGMAMQEAILRGAMIRLRPVLMTTLAMVFGALPLALASGPGSIGRHQ 979

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                +  G++     S+ I  PI         K 
Sbjct: 980  IGWVIVGGLLFGTFFSL-IVVPIAYSYLGRFKKR 1012


>gi|333003427|gb|EGK22971.1| multidrug resistance protein mdtC domain protein [Shigella flexneri
           K-272]
 gi|333017257|gb|EGK36577.1| multidrug resistance protein mdtC domain protein [Shigella flexneri
           K-227]
          Length = 499

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 63/523 (12%), Positives = 144/523 (27%), Gaps = 38/523 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDGTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L+          + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLIISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K + 
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPRE 497



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +    I     +Q  +   P I   L       +I  A
Sbjct: 284 MIRKLPEANIIQTVDSIRAKLPELQETIPAAIDLQIAQDRSPTIRASLEEVEQTLIISVA 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 404 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 461 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 496


>gi|254417709|ref|ZP_05031433.1| RND transporter, HAE1/HME family, permease protein [Brevundimonas
           sp. BAL3]
 gi|196183886|gb|EDX78862.1| RND transporter, HAE1/HME family, permease protein [Brevundimonas
           sp. BAL3]
          Length = 1030

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 69/612 (11%), Positives = 172/612 (28%), Gaps = 27/612 (4%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    ++  + L        ++    +   + F      +   + V   + 
Sbjct: 55  SAPAEMEVQVTRLIEDSLAGLSGVRHITSNISDGVSTTVIEFELGTDTDRATNDVRNAMT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           G+ + L  D ++  +        +++        +     + S  I  +    +      
Sbjct: 115 GLRASLPQDMQEPGVQRIDITGDALITYVVRSPTMTPE--QISWFIDNEMSRALLALGGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q   S  +  ++  E DP RL     T A++S      NN+  G    +     +    
Sbjct: 173 GQVNRSGGVDREMRVELDPQRLAAYGVTAAEVSQALTNVNNNLPGGRVTIAGSERAVRTL 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++                     +        +         +    +     
Sbjct: 233 GAATSVAQL--------------------RETLVPLGEGKTVRLDNLGTVEDKWSEPRRL 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              S     E        +      + ++ V   +V     S  
Sbjct: 273 ARYNGQEAVTFNFLRSRTASEVKVAEKVREEVKKIDEAHPELTISQVTA-SVEEIEESYL 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  + A L +I++F+ +   +  L+A  ++ +++I T A+L  L  +L + ++  +
Sbjct: 332 ASLEALLLGAVLAVIIVFIFLRDWRATLIAATAMPMSLIPTFAILGPLDQSLNVVTLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IG+ VD  I+  E I    R  +  + +           +  +  T +     + F 
Sbjct: 392 SLTIGILVDDAIVEIENIVRHMRDGKPPYDASLEAADEIGLAVVATTATIIAVFAPVGFM 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FA+   +S+  S+  A ++   M  FI+++   +  D   +  +      
Sbjct: 452 PGIIGQFFKAFALAACVSVAFSLLVARTLTPLMAAFILKHSHHEDRDPFWMGGYLKALHW 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                 +    G+   +     SI    +                V       L    + 
Sbjct: 512 CLGNRWKVFIIGILFLVGSIATSIVAKMSFEF-MSPGDTARAAFQVELPPGSTLRQTDAV 570

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           ++ +     +          +        +  A        +        +   +  +I 
Sbjct: 571 VQQITRKLEARPEVTSVYAAVGGQDVTQANIYADMVPKGDRELSQQAFARVMVDEMKQIP 630

Query: 658 GPKISRELIRKG 669
           G +I   + ++G
Sbjct: 631 GARIRAGISQQG 642



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 10/162 (6%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++ + +A++I       W   L A T + + +  T           N+  + A+   IG 
Sbjct: 338 LLGAVLAVIIVFIFLRDWRATLIAATAMPMSLIPTFAILGPLDQSLNVVTLLALSLTIGI 397

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V  + +   ++         D   ++ +E     V T+        P+      
Sbjct: 398 LVDDAIVEIENI---VRHMRDGKPPYDASLEAADEIGLAVVATTATIIAVFAPVGFMPGI 454

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G    +FA+     +      S+ +A  +   +  +  K++
Sbjct: 455 IGQFFKAFALAACVSVAF----SLLVARTLTPLMAAFILKHS 492



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 67/159 (42%), Gaps = 7/159 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +      + M   + + F  + + +  +  L L I       A+ G  F+++A+  VL L
Sbjct: 846  IAFASGILLMYAVLTLLFKSFAYPITIMAALPLAIGGAFIALAIGGANFSMSALIGVLML 905

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + +++ D +   +      +  R+ I  + ++     + T+ A    ++P+A+ 
Sbjct: 906  MGIAAKNSILLVDYV---IMAEKDGMPRREAIMDAAHKRARPILMTTFAMGAGMVPIAMG 962

Query: 790  GGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             G+ +      AI +  G++ +   S+     I   + D
Sbjct: 963  IGADVQFRSPMAIAVLGGLISSTFLSLLYIPAIFTIVDD 1001


>gi|221229642|ref|YP_002503058.1| preprotein translocase subunit SecD [Mycobacterium leprae Br4923]
 gi|13092712|emb|CAC29995.1| putative protein-export membrane protein [Mycobacterium leprae]
 gi|219932749|emb|CAR70580.1| putative protein-export membrane protein [Mycobacterium leprae
           Br4923]
          Length = 597

 Score =  147 bits (371), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 123/537 (22%), Positives = 216/537 (40%), Gaps = 41/537 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +   ++  IG+ +       + ++             LG+DL+GG+ + L     D  
Sbjct: 38  RYLSMFLVLFIGVYLLAFLTGDKRVVP-----------RLGIDLQGGTRVTLTARTPDGS 86

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQG 121
                 L      + S +   G+    +    + + ++    D     N+     L+++ 
Sbjct: 87  RPSREALSQAQQIISSRVNGLGVSGSEVVVDGDNLVITVPGNDGNEARNLGQTARLYIRP 146

Query: 122 VNSKLN---VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR---------- 168
           V + L        K      T    + +   +   Q   +  + +               
Sbjct: 147 VLNSLPVQRGQDPKPGSPAGTLPNFAPMPPDHPGAQPRPYLQDPTSSPSSDPMPSPVPTG 206

Query: 169 -----QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
                +       +    ++  + RI  +    Q   +  Q L    + +        + 
Sbjct: 207 AALPGEVPSVEQPAPPDPRKDLAERIAEEKKWRQSTKQSIQFLALQFESTHCDKDDILAG 266

Query: 224 KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
                       +D N   +     ISG  +  +T+  + +    VVD+ F    A  + 
Sbjct: 267 NDDPNLPLATCSTDHNMAYLLAPSIISGDQIQNSTSGMNQRGVGYVVDLQFKSAAADVWA 326

Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN---FTIETAGILAAMLRAGSL 340
           + T  +IG   A  LD  V++ PVIN+AI  G+ QISG    FT  TA  LA +L+ GSL
Sbjct: 327 DFTAAHIGTQTAFTLDSEVVSVPVINEAILGGRTQISGGDPPFTAATARQLANVLKYGSL 386

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P+     E + V A LG  S+  G  A   GL L++L+ ++ Y   GL+  FS+F +  +
Sbjct: 387 PLSFEPSEAQTVSATLGLTSLRAGLIAGAIGLSLVLLYSLLYYRVLGLLTAFSLFCSGTI 446

Query: 401 TLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
             A+L LL      TL L  IAG+++GIG   DS ++  ERI++E R+ +S   ++  G+
Sbjct: 447 IFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGW 506

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            RA  TI   N    +A  VL F   G V+GFA T+GL+ ++ +     +   ++  
Sbjct: 507 VRARKTIVSGNAVTFLAAAVLHFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYL 563



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 23/134 (17%)

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDK--------------------VVVYDRMRKNM 748
           G    F +  + T + A+L L+G  +N                      VV ++R++  +
Sbjct: 433 GLLTAFSLFCSGTIIFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEI 492

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      SFR  + +         V  +   F++   +       +  FA  +    ++ 
Sbjct: 493 RE---GRSFRSAVPRGWVRARKTIVSGNAVTFLAAAVLHFLAIGQVKGFAFTLGLTTILD 549

Query: 809 ASSSIFIAAPILLF 822
                 +  P++  
Sbjct: 550 LVVVFLVTWPLVYL 563


>gi|222087574|ref|YP_002546111.1| efflux cation transporter protein [Agrobacterium radiobacter K84]
 gi|221725022|gb|ACM28178.1| efflux cation transporter protein [Agrobacterium radiobacter K84]
          Length = 1051

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 66/517 (12%), Positives = 157/517 (30%), Gaps = 40/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L++M+   GLL           +  FP                     L+  
Sbjct: 9   RNPVPAILLFAMLAVGGLLA-----FKYLPVQNFPDMDLPTI---------SVTATLDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L        ++      I +SF   +  E   ++V   +  
Sbjct: 55  APAQLETEVARTIEDSLASLSYLDHITTTITDGTVSIKVSFKLEKDSEAALNEVRNAVDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L    +   +   T +  +++        +     E S  I       +       
Sbjct: 115 VKADLPSQMETPSVTKVTVQNSALLTYAVRSAGLNE--TELSWFIDNDLTKALLSVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++  + DPS +  L  T A +S           G +  +   R +     
Sbjct: 173 QVNRIGGVDREVHVDLDPSTMASLGVTAATVSSQLKAVQADTSGGLGEIGSTRQTLRTLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     + G                    +       ++       ++    A      
Sbjct: 233 AMPSVEALKG--------------------LKIPLANGQQVRLDDVASVTDSFADRSSMA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                S +          +   A    ++        +G  + + + 
Sbjct: 273 YLDGKPAIAVEIKRSNGFSDSTVAADISTAISKFAATHPNVR-IDEAYSTIGPIIDNYNG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+++ +   +  +++  ++ L+VI T  ++ L G +L + ++  + 
Sbjct: 332 SMHMLYEGAILAIVVVWLFLRDWRATILSAVALPLSVIPTFLVMYLAGFSLNIVTLLALS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  +    +     +     +  +  T +   +   F  
Sbjct: 392 LVVGILVDDAIVEIENIARHLRMGKRPLDAALEAANEIGLAVIATTFTLVAVFLPTAFMS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFII 515
           G      R F +T  +++L+S+  A  +   M  + +
Sbjct: 452 GIPGLLFRQFGVTAAVAVLVSLVVARLLTPMMAAYFM 488



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 62/223 (27%), Gaps = 14/223 (6%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG-EKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            V  +    ++   ++  S+   D         +++          D             
Sbjct: 252 QVRLDDVASVTDSFADRSSMAYLDGKPAIAVEIKRSNGFSDSTVAADISTAISKFAATHP 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +      STI             L    I+ +++              W   + +   L
Sbjct: 312 NVRIDEAYSTIGPIIDNYNGSMHMLYEGAILAIVVVW-------LFLRDWRATILSAVAL 364

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +  T     L G   N+  + A+  ++G  V+D +V  + +    +         D 
Sbjct: 365 PLSVIPTFLVMYLAGFSLNIVTLLALSLVVGILVDDAIVEIENI---ARHLRMGKRPLDA 421

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
             ++ NE     + T+       LP A   G        F + 
Sbjct: 422 ALEAANEIGLAVIATTFTLVAVFLPTAFMSGIPGLLFRQFGVT 464



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 69/171 (40%), Gaps = 8/171 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
            + S EL +   + + I    +   + + F  +      +  L L +   L    + G  F
Sbjct: 837  QRSSELFQSFGLAMAIGVFCIYAVLVLLFHDFLQPFTLLMALPLSLGGALVPLVVTGTSF 896

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            +++ V  +L L+G    + +++   +   +      +   D +  + ++     V T++A
Sbjct: 897  SMSVVIGLLMLMGVVTKNSILL---IEYAIMARRQGMPRLDALVDACHKRARPIVMTTIA 953

Query: 779  AFISVL--PMAVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                +L   +++ GG        AI +  G++++   S+ +   I  F+ D
Sbjct: 954  MASGMLPAALSLTGGDSSFRQPMAIVVIGGVMMSTLLSLIVIPVIFTFVDD 1004


>gi|119716616|ref|YP_923581.1| preprotein translocase subunit SecD [Nocardioides sp. JS614]
 gi|119537277|gb|ABL81894.1| protein-export membrane protein SecD [Nocardioides sp. JS614]
          Length = 564

 Score =  147 bits (370), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 119/507 (23%), Positives = 204/507 (40%), Gaps = 32/507 (6%)

Query: 46  LGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFAD 104
           LGLDL+GG+ +++    +      L   +  +   +   G+    +     + I +    
Sbjct: 36  LGLDLKGGTRIMMTATGNPTSAN-LNEAAGIIDQRVNGSGVAEAEVTTQGGRNIIVEIPG 94

Query: 105 SRF---KENIADKVTLFLQGVN------------------SKLNVDPKKNLLVTTTEKEI 143
                          L  + V                   +        +     ++   
Sbjct: 95  PTSNSLVGLATRTAQLRFRTVACTSQTPGPCATGAAPTLPNDGPSLAPTDGATGNSKNRP 154

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
             +   +            + E           S  +          + L    DP R  
Sbjct: 155 GFLAKPSAKPSQQPSQTASASESSSPTESPSESSSESPGAGSDDPAQMALDFMTDPGRAA 214

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
                       K + +N  K  +          G +YL+     + G  LN A A    
Sbjct: 215 IEAFNAYTCPTTKPVDDNPDKFLVTCGTEAEGDAGVKYLL-SPAAVEGTDLNSADAVVPS 273

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDN--IGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           ++   +V +S    G   F +++R     G+  AVVLDG V+++PV    IP+G AQI+G
Sbjct: 274 QSVSWIVQLSLGGEGKGVFADLSRAMSGTGQQFAVVLDGVVISSPVFTGVIPNGDAQITG 333

Query: 322 NFTIETAGILAAMLRAGSLP--IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           NFT  +A  LA  L+ G+LP            +GA L  D +  G  A + GL L++L+ 
Sbjct: 334 NFTKSSAQSLATSLKYGALPIAFDKEATSVEQIGASLAGDQLSAGILAGIIGLALVMLYC 393

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVN 435
           ++ Y   GLV   S+ +  ++T + + LL      TLTLP IAG+++ +G+  DS I+  
Sbjct: 394 LLYYRGLGLVVIASLVVAGVVTYSTVLLLSRTAGFTLTLPGIAGLIVAVGITADSFIVYF 453

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ERIR+E R  +S+  ++  G+ RA  T   ++  +L+A +VL+ F  G V+GFA T+G+S
Sbjct: 454 ERIRDEMRDGKSMRVAVQAGWKRARGTCVAADTVSLLAAIVLYIFATGVVKGFAFTLGIS 513

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKS 522
            +I +         M+  + +YK    
Sbjct: 514 TVIDLAIFFWFTHPMVSVLGKYKFFNR 540



 Score =  108 bits (269), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 79/205 (38%), Gaps = 8/205 (3%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
              +   +   +K     I       + E +G  ++ + +  GI+  II    +++Y  +
Sbjct: 336 TKSSAQSLATSLKYGALPIAFDKEATSVEQIGASLAGDQLSAGILAGIIGLALVMLYCLL 395

Query: 687 RFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            ++    L  I +L++    T     L     G    L  +A ++  +G + +  +V ++
Sbjct: 396 YYR-GLGLVVIASLVVAGVVTYSTVLLLSRTAGFTLTLPGIAGLIVAVGITADSFIVYFE 454

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R  M+      S R  +        G  V     + ++ + + ++   V+  FA  + 
Sbjct: 455 RIRDEMRD---GKSMRVAVQAGWKRARGTCVAADTVSLLAAIVLYIFATGVVKGFAFTLG 511

Query: 803 FGIVVAASSSIFIAAPILLFIYDWR 827
              V+  +   +   P++  +  ++
Sbjct: 512 ISTVIDLAIFFWFTHPMVSVLGKYK 536


>gi|312878802|ref|ZP_07738602.1| acriflavin resistance protein [Aminomonas paucivorans DSM 12260]
 gi|310782093|gb|EFQ22491.1| acriflavin resistance protein [Aminomonas paucivorans DSM 12260]
          Length = 1029

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 60/502 (11%), Positives = 132/502 (26%), Gaps = 35/502 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             I L     N   +  L+  P         L          V        +   +    
Sbjct: 17  LLIALAFLGVNAYRKMGLELMPKVDAPYISIL---------TVWPGASPTDIEVDVAKKI 67

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
           ++  S +      + +  +   + +L F         AD V   +    S+L  D +K +
Sbjct: 68  EDAVSGVDGLKHVISTCMENAVQTSLEFELGTDVNVAADDVREKVDQKLSELPEDVEKPV 127

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
           +         +V      D  +    E      +   D+  +         +     ++ 
Sbjct: 128 IQKFDVNAQPVVTLALVGDLPLD---ELYDYADQSLRDRFSVLSGVADVKLTGGAKREVH 184

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
              D   L     T+ ++         +             S           +I     
Sbjct: 185 VLLDRDLLAAAGLTSLQVEQALREGVRTLPAGRVREGGAEFSVRYDAEFHSVPDIG---- 240

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPS 314
                            +        R +      +            L           
Sbjct: 241 ----------------SLQVVGRDGARRYIRDLGTVRLGTEERRQAVFLDGRPAVAIRVV 284

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
            KA  +    ++        L+                     S             L  
Sbjct: 285 KKADANTVVVVDKVRATMEALQKTLPGGTKLTWVSDEGDYIRASVDSTVNNIWQGVLLTA 344

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
            +LF+ +   +   V   S+ L +I+ L  + LLG TL   ++    L +G+ V ++++V
Sbjct: 345 GILFLFLYNLRSTFVVAVSMPLTIIIALFFMQLLGYTLNTSTLLAAGLSVGILVSNSLVV 404

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAIT 491
            E +    ++    + +   G +     +  S  T ++  + +   G       R FA+T
Sbjct: 405 LESVLTHLQRTGDPWRAAREGTADVAVAVLASAGTNVVVMLPIGLMGSMVGLFFRPFALT 464

Query: 492 MGLSILISMFTAISIVRAMMIF 513
             +   +S+F + ++   +   
Sbjct: 465 SVVVNGVSIFISFTLTPILAAL 486



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/209 (20%), Positives = 89/209 (42%), Gaps = 7/209 (3%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            P  +  QT   E+ +  +      +  +       + +       ++ V+++ +A+   I
Sbjct: 820  PLGTAVQTLNREIREGDLLPPGYEARFRGEFERMDEATAAFGEAAVLSVLLTFLALSA-I 878

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
               FKW  A   +TT+ L +   L   AL G   ++  +   + LIG  VN+ ++V DR 
Sbjct: 879  MESFKW--ATLILTTVPLGLVGVLWALALTGTSMSIFVLLGTVMLIGIVVNNAILVIDRF 936

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
               ++     +   + + K++ E+    +  + AA + +LP+AV    G  +     I  
Sbjct: 937  L-TIRRAEPELGQEEGMYKALEESFRPVLMVTAAAVLGMLPLAVASGLGSELTNGIGIAS 995

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            A G++++   ++F+   I L     R + 
Sbjct: 996  AGGVLMSGLLALFVVPLIYLAYVKVRRRR 1024



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 75/240 (31%), Gaps = 17/240 (7%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R         +   Q    +    V ++           V++ V+  +  +        
Sbjct: 254 IRDLGTVRLGTEERRQAVFLDGRPAVAIRVVKKADANTVVVVDKVRATMEALQKTLPGGT 313

Query: 654 TEIVGPKISRELI-------RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                      +             GV+++A  + +++   +          ++ L I  
Sbjct: 314 KLTWVSDEGDYIRASVDSTVNNIWQGVLLTAGILFLFL---YNLRSTFVVAVSMPLTIII 370

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L F  L G   N + + A    +G  V++ +VV + +   +     +        +   
Sbjct: 371 ALFFMQLLGYTLNTSTLLAAGLSVGILVSNSLVVLESV---LTHLQRTGDPWRAAREGTA 427

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +     + ++    + +LP+ + G   G     FA+       V+   S F   PIL  +
Sbjct: 428 DVAVAVLASAGTNVVVMLPIGLMGSMVGLFFRPFALTSVVVNGVSIFIS-FTLTPILAAL 486


>gi|325527131|gb|EGD04539.1| RND superfamily multidrug transport protein [Burkholderia sp.
           TJI49]
          Length = 1037

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 84/679 (12%), Positives = 186/679 (27%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAVTSKTLPLTQVQDLTDTRLAMKISQIAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKNGRPVMLTDVAKVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +          +   +   T++        L+          V          +    
Sbjct: 275 VNSEPAIILNVQRQPGANVIATVDAIKAQLPKLQETLPAALDVQVVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELMLSVVLVVLVMYLFLANIYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDSGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHSPPPESHRFEARVHRTIDWVIA 514

Query: 540 -------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +   +  +  +F     +     G IQ    A + +   
Sbjct: 515 RYAVALEWVLNRQRATLVVALLTLVLTGLLYVFVPKGFFPAQDTGVIQAITQAPQSISYG 574

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    ++L    +   N D   +F+         +  +  +    +   +E        
Sbjct: 575 AMAERQQTLAAEILKDPNVDSLTSFIGVDGSNITLNSGRMLINLKARDARSETASQIIRD 634

Query: 653 NTEIVGPKISRELIRKGIV 671
             + V       L  + + 
Sbjct: 635 LQQRVANVTGISLFMQSVQ 653



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            Y  +    ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +
Sbjct: 356 IYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTIATGFVVDDAIVMIENI---AR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                 S  +   K   +     +  +++    ++P+   G   G +   FAI +A  IV
Sbjct: 413 YVEEGDSGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIV 472

Query: 807 VAASSSIFIAA 817
           ++A  S+ +  
Sbjct: 473 ISAVVSLTLVP 483



 Score = 41.2 bits (94), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGAGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDALARR 1019


>gi|295700436|ref|YP_003608329.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
 gi|295439649|gb|ADG18818.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
          Length = 1102

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 68/546 (12%), Positives = 143/546 (26%), Gaps = 38/546 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G L        +  +   P+      +             +   
Sbjct: 9   RRPVATTLLAIAILISGTLA-----YFRMPVAPLPNIAFPVIV---------VQANMAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +              + I + F   R     A  V   +Q 
Sbjct: 55  SPNIMASTVAEPLERRLGTIADVEELTSISYVGSSMIIVEFGLKRDINGAARDVEAAIQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    + N          + ++   ++        +           Q+   +   
Sbjct: 115 ARADLPTTLRSNPSYRQYNPADAPIMV-LSLTSDTLTKAQLYDSADSVIQQQLSQVQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +  E  P +L         +                             
Sbjct: 174 QITLGGGALPSVRVELQPGKLNSYGIGMEDVRAAISA--------------------ANA 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                           T+N       P  D+                 +      + +  
Sbjct: 214 DSAKGHIDVDDQRYVVTSNDQITHAAPYRDLVVAYRDGAPVKLRDVAQVRDSNENIRNAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I       +   T+     +   + A         V      +   S S 
Sbjct: 274 LFNGKSAILVIVYPMPGSNVVSTVAQIRNVLPAIEATLPSSVHVDVAIDRSQSVTSSVSD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+ V+F+ +   +  L+   ++ L+++ T   + LLG ++   S+  + 
Sbjct: 334 TERTLFIAVLLVVGVVFIFLQSPRATLIPAVALPLSIVGTFGPMYLLGYSIDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFFF 480
           +G G  VD  ++V E +        S   +   G      T I  S     +   ++ F 
Sbjct: 394 IGTGFVVDDAVVVLENVVRHMELGLSPKEAAVKGAGEVGFTVISMSLSLIAVFLPIILFP 453

Query: 481 GGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FAIT+ ++ILIS+  ++++  AM  +++                    D  
Sbjct: 454 GIVGLMFHEFAITLSIAILISLVISLTVTPAMCAYVLSRNNAGHSKARWAQWVERQFDRF 513

Query: 539 AIQFMR 544
              + R
Sbjct: 514 KDAYAR 519



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 90/281 (32%), Gaps = 15/281 (5%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                         +          L V       + +           +I        K
Sbjct: 219 HIDVDDQRYVVTSNDQITHAAPYRDLVVAYRDGAPVKLRDVAQVRDSNENIRNAGLFNGK 278

Query: 616 NFLVRLQYQPGDSVAQTRVLE------MVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
           + ++ + Y    S   + V +       ++  +   V +    +          +  R  
Sbjct: 279 SAILVIVYPMPGSNVVSTVAQIRNVLPAIEATLPSSVHVDVAIDRSQSVTSSVSDTERTL 338

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + V++    + I++         L     L L I  T G   L G   +  ++ A+   
Sbjct: 339 FIAVLLVVGVVFIFLQ---SPRATLIPAVALPLSIVGTFGPMYLLGYSIDNLSLMALTIG 395

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            G+ V+D VVV + +   ++     +S ++   K   E     +  S++     LP+ ++
Sbjct: 396 TGFVVDDAVVVLENV---VRHMELGLSPKEAAVKGAGEVGFTVISMSLSLIAVFLPIILF 452

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G V      FAI ++  I+++   S+ +   +  ++    
Sbjct: 453 PGIVGLMFHEFAITLSIAILISLVISLTVTPAMCAYVLSRN 493



 Score = 40.8 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/242 (16%), Positives = 95/242 (39%), Gaps = 8/242 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L S +    S Q           + +      + ++    + + I EI   ++I  + 
Sbjct: 844  SVLTSYKNSHTSTQVNHQSGLVAATISFNLPAGGSLSQAGAAINETIREIGMPASIHGSF 903

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFAL 713
                    + +    + ++ +   + I + + ++       I + +    I  TL    +
Sbjct: 904  AGAAAAYSQSMGVVPLLILAALGVVYIVLGVLYESSIHPLTILSTLPSAGIGATLALL-I 962

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            FG  F++ A+  ++ LIG    + +++ D            +  RD I  +    L   +
Sbjct: 963  FGTPFSVIAMIGIILLIGIVKKNGIMMVD--VAIQLQRQEQMPARDAIHAAALIRLRPIM 1020

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+ AA +  +P+A+    GGS+     I +  G++++   +++    I L++   R++ 
Sbjct: 1021 MTTFAAVLGAVPLAIGIGQGGSLRQPLGITVMGGLILSQMFTLYTTPVIYLYLDRLRSRL 1080

Query: 831  AR 832
             R
Sbjct: 1081 VR 1082


>gi|271967387|ref|YP_003341583.1| Preprotein translocase subunit SecD-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270510562|gb|ACZ88840.1| Preprotein translocase subunit SecD-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 581

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 118/527 (22%), Positives = 205/527 (38%), Gaps = 52/527 (9%)

Query: 46  LGLDLRGGSHLVLEVDED---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
            GLDL GG+ + L+             L +    +R+ +   GI    + +  + I +S 
Sbjct: 26  YGLDLAGGTTVTLQPVTPNGTPPTEESLNLAVGIIRNRVNGSGISDAEVAKSGDNIVISV 85

Query: 103 ADSRFKENIA---DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
             +  +E +        L  + V +     P     + T     +   S     +  S A
Sbjct: 86  PGAGQEEVVKLVGTTAELRFRQVMAVAAGSPPPPGQMPTQAPTPAPSASPTATGKQNSRA 145

Query: 160 IEQSMEIIRQR------------------------------------IDQIGISESTIQR 183
            +                                              +    +  T Q 
Sbjct: 146 PKPGQTATPSPTGSPAGRALSSALTNPSPGATQAPSDKKPAKNASPSAEPSQSAAPTAQP 205

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                         DP+ +   +    +            +            D +   V
Sbjct: 206 TAPAMDPNDPMAGVDPAGIDPAVLKQFQELDCAKDNGQGAQDDPNKQFVGCSQDSSTKYV 265

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV- 302
            DK  ++G  ++ ATA  D  T + +V +SF   G  ++ +VT               V 
Sbjct: 266 LDKAAVTGTSIDTATAGVDQTTGEWLVQLSFKGEGPTQWSKVTTTAFNSQPPRNQVAMVL 325

Query: 303 ----LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               ++APVI + I  G+AQISG+FT  TA  LA  L+ G+LP+K        V + LG+
Sbjct: 326 DGVVISAPVIQEPITGGRAQISGSFTQVTADELAGQLKFGALPLKFKKGSIEEVSSTLGA 385

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATLTL 414
           D +  G  A   GL L++++ ++ Y   G+V+  S+ +  +LT   + +LG      L+L
Sbjct: 386 DQLRGGLIAGAIGLGLVLVYSMLYYRGLGIVSVLSLVVASVLTYQAVVILGTFAGFRLSL 445

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIA 473
           P I G+++ IG+  DS I+  ERIR+E ++ + S+  ++++ + RA  TI  ++    IA
Sbjct: 446 PHIIGLIVSIGITADSFIVYFERIRDEMKEGRRSLRTAVEVAWVRARRTILIADAVMFIA 505

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            VVL+F   G V GFA  MGL+ LI +       +  +  + + K  
Sbjct: 506 AVVLYFLAVGGVAGFAFAMGLTTLIDIAVVFMFTKPFVALLAKRKFF 552



 Score =  109 bits (271), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 78/251 (31%), Gaps = 10/251 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                 N     + V   L+ + I     Q         +   +    +      L    
Sbjct: 307 VTTTAFNSQPPRNQVAMVLDGVVISAPVIQEPITGGRAQISGSFTQVTADELAGQL---- 362

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK---WYFALGA 696
            K   +       + E V   +  + +R G++   I    +L+Y  + ++       L  
Sbjct: 363 -KFGALPLKFKKGSIEEVSSTLGADQLRGGLIAGAIGLGLVLVYSMLYYRGLGIVSVLSL 421

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           +   +L     +      G   +L  +  ++  IG + +  +V ++R+R  MK      S
Sbjct: 422 VVASVLTYQAVVILGTFAGFRLSLPHIIGLIVSIGITADSFIVYFERIRDEMKEGRR--S 479

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            R  ++ +        +      FI+ + +       +  FA  M    ++  +      
Sbjct: 480 LRTAVEVAWVRARRTILIADAVMFIAAVVLYFLAVGGVAGFAFAMGLTTLIDIAVVFMFT 539

Query: 817 APILLFIYDWR 827
            P +  +   +
Sbjct: 540 KPFVALLAKRK 550


>gi|291277220|ref|YP_003516992.1| protein-export membrane protein [Helicobacter mustelae 12198]
 gi|290964414|emb|CBG40264.1| protein-export membrane protein [Helicobacter mustelae 12198]
          Length = 526

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 174/538 (32%), Positives = 287/538 (53%), Gaps = 40/538 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            +I++ +    G+ +++P+                 +ISLGLDL+GG +L+L V   + +
Sbjct: 8   RLIIFLLAALFGICLSIPSLFQTHGP----------KISLGLDLQGGLNLLLGVKTQEAI 57

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
                  +  +R  +K+  I +  +   +++++    DS     + D +   + G+    
Sbjct: 58  KARYASLASLIRFDVKQRQILLEKLHPKEDQVSFELIDSEDA-KVIDAILAKINGIQ--- 113

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                    V       +I  +   I+++  +AI Q++  IR R+DQ G+SE ++ + G 
Sbjct: 114 ---------VQKQGDFYTITFTPQEIEEIKKNAISQAIATIRNRLDQFGLSEPSVTQQGR 164

Query: 187 HRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLP--------NNSKKGFMFGVRFLRD 235
             IL++LPG +      R+R L+  +A +    V           +  +   +G   L  
Sbjct: 165 DNILVELPGIKSVEEENRVRDLIAKSAHLQMMAVDEDHNLRVDSMSELEAQKYGDVILPF 224

Query: 236 SD-----GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
           S      G + L++    + G  L  A   +D   H+PVV  + D  GA+ F + +  NI
Sbjct: 225 SVENGHPGGKVLLKAIPILDGDRLTDARVAYDES-HQPVVSFTLDSQGAKVFGDFSGANI 283

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           GK +A+VLDG+V +APVI Q I  G  QISG F++E A  LA  LR+GSLP  L ++E+R
Sbjct: 284 GKRMAIVLDGKVYSAPVIRQRIGGGSGQISGGFSVEQASDLAITLRSGSLPAPLEVLEKR 343

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
           +VG  LG DSI     A+++G  L+V FMIV Y   G++A  ++ +N+ L ++++++ GA
Sbjct: 344 SVGPSLGKDSIRASMIALISGFALVVGFMIVYYSMAGVIATCALVVNIFLIISVMAIFGA 403

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           TLTLP +AGIVL +G+AVD+NI++NERIRE  R  +S   ++ +G+  A   IFDSNIT+
Sbjct: 404 TLTLPGMAGIVLTVGVAVDANIIINERIREALRAGESAARAVHIGYVNASRAIFDSNITS 463

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           LIA+V+L+ +G GA++GFA+T G+ IL S+ TAI   +     I+             
Sbjct: 464 LIASVLLYAYGTGAIKGFALTTGIGILASIITAIVGTQGFYQAILPKIANTKSLYFWF 521



 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 73/159 (45%), Gaps = 4/159 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++ IR  ++ +I     ++ ++ + +     + A   L+++I   +   A+FG
Sbjct: 344 SVGPSLGKDSIRASMIALISGFALVVGFMIVYYSM-AGVIATCALVVNIFLIISVMAIFG 402

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  +++ +R+R+ ++      S    +             +
Sbjct: 403 ATLTLPGMAGIVLTVGVAVDANIIINERIREALRA---GESAARAVHIGYVNASRAIFDS 459

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
           ++ + I+ + +  +G   I  FA+    GI+ +  ++I 
Sbjct: 460 NITSLIASVLLYAYGTGAIKGFALTTGIGILASIITAIV 498


>gi|116074650|ref|ZP_01471911.1| preprotein translocase subunit [Synechococcus sp. RS9916]
 gi|116067872|gb|EAU73625.1| preprotein translocase subunit [Synechococcus sp. RS9916]
          Length = 320

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/217 (26%), Positives = 112/217 (51%), Gaps = 7/217 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +    + L+     +     V+E V          +  Q+ + +GP +  +L+   +V +
Sbjct: 100 DGGQSLSLRTPALSAAQSQEVIEAVTPLAGPF--QTQGQSVDTIGPSLGSQLLLSSLVSL 157

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI----EFNLTAVAAVLTL 729
           +++   + +YI IR+   +A+ A+  L  D+    G FA  G+    E +     ++LT+
Sbjct: 158 LVAFAGIALYISIRYDGRYAVLALLALAHDVVIVCGIFAWLGLWIGLEVDSLFAVSLLTI 217

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            GYSVND VVV+DR+R+  +     +   D +D++++ TL R++YTS    + ++ + ++
Sbjct: 218 AGYSVNDTVVVFDRIRERQREDG-DLPINDQVDRAVSATLTRTIYTSGTTLLPLIALILF 276

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           GG+ +  FAI +A G++V + SSI +A  +L      
Sbjct: 277 GGATLYWFAIALALGVIVGSWSSIALAPSLLTIWSGR 313


>gi|73543107|ref|YP_297627.1| acriflavin resistance protein [Ralstonia eutropha JMP134]
 gi|72120520|gb|AAZ62783.1| Acriflavin resistance protein [Ralstonia eutropha JMP134]
          Length = 1065

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 73/516 (14%), Positives = 150/516 (29%), Gaps = 37/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   +   G++       P   +   PS                    L   
Sbjct: 9   RRPVMTVLLCIAVIVTGIV-----LYPTIPIAALPSFNSPVIQ---------VTATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +    +   S     + IT+ F   R  +  A  V   L  
Sbjct: 55  SPETMAASVATQLEKQFATIPGVTVISSSNTLGNSSITIEFNSDRDIDAAAVDVQAALFR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L ++              + VL    I+       E +          +       
Sbjct: 115 AQRSLPIEMTVPPSYRKVNPADAPVLL-LAINSPAMSLAELNAFGDNLISPTLATLPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +     P  L     T  +++      N +            DS     
Sbjct: 174 QVQVFGQKRFAVRVRAHPDALAARGLTLDELATALNRANANTPVGTL------DSARQTL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +++                     I   +             +   +  +  G 
Sbjct: 228 TIQANRQLANAD-------------AFRNIIVASQANGVLVRLSDVAEVEDSVETIKTGS 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        L A         V      +   S   
Sbjct: 275 WLNNERSIVLAVLRQPDANTVAVVDAIKGALPRLLAQMPGSVNVSVVNDRSNSIRESIHD 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A+   LV++V+F+ +      L+   S+ +++I T+AL+   G +L   S+  I 
Sbjct: 335 VQFTLALTVALVVMVIFLFLRRAAATLIPTVSLPISLIGTVALMKAFGYSLDNVSLLAIT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +      +  +G      TI   +I+ +   + +FF  
Sbjct: 395 LAVGLVVDDAIVMLENIVRHIEEGVPPLKAALVGSREMGFTILSISISLVAVFIPIFFMP 454

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G        FA  + LSIL+S   +++++  +    
Sbjct: 455 GVIGLLFHEFAAVVSLSILVSALVSLTLIPMLCARF 490



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 84/252 (33%), Gaps = 12/252 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + V +     L  +    E     +             + L            V+
Sbjct: 239 DAFRNIIVASQANGVLVRLSDVAEVEDSVETIKTGSWLNNERSIVLAVLRQPDANTVAVV 298

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKW 690
           + +K  +  ++          V    S  +          + + ++ + M+I++++R + 
Sbjct: 299 DAIKGALPRLLAQMPGSVNVSVVNDRSNSIRESIHDVQFTLALTVALVVMVIFLFLR-RA 357

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    +L + +  T+     FG   +  ++ A+   +G  V+D +V+ + +   ++ 
Sbjct: 358 AATLIPTVSLPISLIGTVALMKAFGYSLDNVSLLAITLAVGLVVDDAIVMLENI---VRH 414

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               +           E     +  S++     +P+    G +      FA  ++  I+V
Sbjct: 415 IEEGVPPLKAALVGSREMGFTILSISISLVAVFIPIFFMPGVIGLLFHEFAAVVSLSILV 474

Query: 808 AASSSIFIAAPI 819
           +A  S+ +   +
Sbjct: 475 SALVSLTLIPML 486



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 82/252 (32%), Gaps = 12/252 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +     + V +S   +    +    ++ Q           L        A  ++    ++
Sbjct: 795  VRSKTGQMVPISAFATTERRVGPIAVNHQGQLPSVTVSFNLAPGAALGEASAKIDRYRQE 854

Query: 641  KITEIVPLSTIQNTEIVGPKIS--RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
                    ++      V       + ++    + VI + + +L        +   L  + 
Sbjct: 855  IAMPTSIFTSWGGDAAVFQSSQATQIVLLVAAIAVIYTLLGVL-----YESYIHPLTILA 909

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             L       L    LF +E +L A   VL LIG    + +++ D            +   
Sbjct: 910  GLPSAAIGALLTLFLFDVELSLIATIGVLMLIGIVKKNAIMMID--FALAAQREQGMPPA 967

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFI 815
              I ++        + T+ AA +  LP+A+    G  +     + +  G++ +   ++FI
Sbjct: 968  RAIRQACLLRFRPIMMTTFAAVMGALPLALGIGAGAELRQPLGLAVVGGLLFSQVITLFI 1027

Query: 816  AAPILLFIYDWR 827
               I L +  + 
Sbjct: 1028 TPVIYLALDRFS 1039


>gi|313498479|gb|ADR59845.1| Multidrug resistance protein mdtC [Pseudomonas putida BIRD-1]
          Length = 1035

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 55/516 (10%), Positives = 147/516 (28%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   I  +G +           +   P       +             L   
Sbjct: 9   RRPVATMLLSLAIMLLGGVS-----FGLLPVAPLPQMDFPVIV---------VSANLSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S  Q   ++ + F   R  +  A +V   +  
Sbjct: 55  SPEVMASTVATPLERKLGSIAGVTTLTSSSNQGSTRVVIGFELGRDIDGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 TRNLLPSGMRSMPTYKKINPSQAPIMV-LSLTSDVLQKGQLYDLADTILSQSLAQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    +P  L Q   +  ++       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDAERNWQVRAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +   +             +   +    +  
Sbjct: 234 QLESAKD--------------------YEPVVIRQQNGTILRLSDVATVTDGVENRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +   +   T++        L++         V          +   
Sbjct: 274 FFNDQAAVLLVVNRQTGANIIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+++ +   +  L+   ++ ++++ T A++ + G +L   S+  ++
Sbjct: 334 AEHTLLIAVVLVILVVYLFLGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I       Q    +  +G      T+   N++ +   V + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      + F+IT+  +I++S+  ++++   +    
Sbjct: 454 GIVRNLFQEFSITLAAAIIVSLVVSLTLTPMLCARW 489



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 47/141 (33%), Gaps = 6/141 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                  +L     + + +  T     + G   N  ++ A++   G  V+D +VV + + 
Sbjct: 352 FLGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +                 E     +  +++     + +   GG V      F+I +A
Sbjct: 411 --SRHIENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLA 468

Query: 803 FGIVVAASSSIFIAAPILLFI 823
             I+V+   S+ +   +    
Sbjct: 469 AAIIVSLVVSLTLTPMLCARW 489



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 94/267 (35%), Gaps = 6/267 (2%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            N    +       V         V  S +   +    + +     +     + +   +  
Sbjct: 757  NPKYAWDPSTLEQVQVITADGARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGY 816

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +  + +  +++ + ++     +            +  +     ++ + + + + + I ++
Sbjct: 817  SPDQAMAALERAVAKLGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYE 876

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  ++TL       L    + G EF+L ++  +  LIG    + +++ D      
Sbjct: 877  SYIHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMID--LALQ 934

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                   S  + I ++    L   + T++AA +  LP+ +    G  +     + +  G+
Sbjct: 935  LERHQGFSPEESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGL 994

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            V +   +++    + L++   R +  R
Sbjct: 995  VFSQILTLYTTPVVYLYLDRLRHRFNR 1021


>gi|213163030|ref|ZP_03348740.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 1026

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEARMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAIDRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIAI 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEARMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|299147006|ref|ZP_07040073.1| multidrug efflux pump BpeF [Bacteroides sp. 3_1_23]
 gi|298514891|gb|EFI38773.1| multidrug efflux pump BpeF [Bacteroides sp. 3_1_23]
          Length = 1143

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 72/527 (13%), Positives = 146/527 (27%), Gaps = 44/527 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +          I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSTASNTGSGDISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLVVFSLYDETDTYSESFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P  + Q       +S      N       FG    R + 
Sbjct: 171 QGVGDANVLG-QDYSMRIWLRPDVMAQYKLVPGDVSAALAEQNVEAAPGQFGE---RSNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPDGEVLRLKDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               +          
Sbjct: 274 NFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKLNISMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFILSLVGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   V 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMAVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   R F +TM ++I +S   A+++  A+   +++  K 
Sbjct: 454 VSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHKK 500



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 76/268 (28%), Gaps = 29/268 (10%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A     ++   S  +      IS  N       +V          A T + E+ ++ + 
Sbjct: 864  SAGEMAPIAQFISVEKVYGPDIISRFNLYTSMKVMVAPASGYTSGQALTALAEVAQENLP 923

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT- 699
                                        G+I     + +Y+ +      +   L  + + 
Sbjct: 924  TGYTYELGGMAREEAQSSG------SATGLIFVLCFVFVYLLLSAQYESYILPLAVLLSI 977

Query: 700  ---LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRK 746
               L+       G  A+  I      +           A++ L+G    + +++ +    
Sbjct: 978  PFGLLGSFLFVNGVSAIGNISALKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA-- 1035

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAF 803
             +      +S            L   + TS+A  + +LP+   +G       +       
Sbjct: 1036 -LDRRKMGMSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIG 1094

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G+++     IFI   + +     + K  
Sbjct: 1095 GMLIGMICQIFIVPALFVIFQYLQEKVK 1122



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          + + +    +    +  Q    ++      +E +  + ++ +P     
Sbjct: 262 DIAEIQLDRLGYNFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKL 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + +  +I + I + I ++I        L     + + +  T    
Sbjct: 322 NISMNANDFLFASIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFIL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +    TS     +   ++NE  G 
Sbjct: 382 SLVGFSLNLLTLCALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASI--DAMNELGGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V  ++      +P++  GG+       F + MA  I ++A +++ ++  +   +     
Sbjct: 440 IVSITLVMMAVFVPVSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHK 499

Query: 829 K 829
           K
Sbjct: 500 K 500


>gi|207723632|ref|YP_002254030.1| transporter protein [Ralstonia solanacearum MolK2]
 gi|206588835|emb|CAQ35797.1| transporter protein [Ralstonia solanacearum MolK2]
          Length = 1033

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 83/699 (11%), Positives = 200/699 (28%), Gaps = 43/699 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           RN    ++L+ ++   G+         Q  +   P           LDL   +  + +  
Sbjct: 9   RNPVPAILLFILLTLAGMY-----GFRQLPIANLPD----------LDLPSVTIALTQPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    +   + L        S+   Q  ITL F   +   +   +    + 
Sbjct: 54  AAPAQLETEVARKVENSLATLSGVKHMRTSITDGQVNITLEFILEKKLSDALIETKDAVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S L  D ++  +        + +L      ++   A   S  +       +      
Sbjct: 114 RIRSDLPTDLQQPSISAVRVGGEATLLYAIASSRMDEEA--LSWFVDDTVSKTVLGVPGI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      +  Q+  E DP RL  +  T A +S           G    +     +    
Sbjct: 172 GKFERVGGVQRQVRVEVDPVRLAAMGATAADVSRALRTVEQESSGGRGQLGGTEQAVRTI 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V    E++ + L  +            V  +  E       +       K        
Sbjct: 232 ATVRQAEELNHLPLVLSDGRRVNLDQVATVSDAVAERSQIALLDGEPAVGFKLYRAKGFD 291

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +  A  + QA+   +A   G                              V        
Sbjct: 292 EMRIAADVTQALGKLQAADPGL---------------------SFTKISGTVDYTREQFD 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L ++V++  +   +  L++  ++ L+++   A +  +G +L   ++  +
Sbjct: 331 GSMHMLYEGALLAVLVVWWFLRDWRATLISASALPLSILPAFAAMYWIGYSLNTVTLLAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G+ VD  I+  E I   +R  + +  +     +     +  + +T ++  +     
Sbjct: 391 AVIVGILVDDAIVEIENIERHSRMGKPIKQAAGEAVTEIALAVIATTMTLVVVFMPTAMM 450

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      + F  T  +++L S+  A  +   +  ++++    ++   +       +   
Sbjct: 451 SGIPGLFFKQFGWTAVVAVLSSLLVARVLTPMLAAYLLKAHPGETEAKDGRLMVLYLGWV 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                 R       ++I F   +I  L           +G   + +       L+  R+ 
Sbjct: 511 RWCLAHRWLTLLAAVAIFFGSVAIVPL-LKTGLIPPSDRGYSTVRIELPPGSTLNATRAT 569

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            E+ +      +  +     +   Q   G       V       +         Q     
Sbjct: 570 TEAARQAIGGLKGVEHVMTMVGAAQAVGGGQTQAGEVRRATMTLVLAPRGARLDQAAIET 629

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
             + +   +      + +  +   I + +      AL A
Sbjct: 630 QVRRALVNVPGARFSLGVGGLGEKISLILASDDTAALKA 668



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 83/265 (31%), Gaps = 11/265 (4%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
             + L +   R V+L  V +  +++                    + +  D +     + 
Sbjct: 241 NHLPLVLSDGRRVNLDQVATVSDAVAERSQIALLDGEPAVGFKLYRAKGFDEMRIAADVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               K+    P  +             +      +    + +A+L+  W    W   L +
Sbjct: 301 QALGKLQAADPGLSFTKISGTVDYTREQFDGSMHMLYEGALLAVLVVWWFLRDWRATLIS 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            + L L I          G   N   + A+  ++G  V+D +V  + +    +       
Sbjct: 361 ASALPLSILPAFAAMYWIGYSLNTVTLLALAVIVGILVDDAIVEIENI---ERHSRMGKP 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            +    +++ E     + T+M   +  +P A+  G        F       ++ +   + 
Sbjct: 418 IKQAAGEAVTEIALAVIATTMTLVVVFMPTAMMSGIPGLFFKQFGWTAVVAVLSSLLVAR 477

Query: 814 FIAAPILLFI-----YDWRAKNARI 833
            +   +  ++      +  AK+ R+
Sbjct: 478 VLTPMLAAYLLKAHPGETEAKDGRL 502



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 67/163 (41%), Gaps = 6/163 (3%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++I  + +   + + F  ++  L  ++ + L +        L     ++ ++  ++ L
Sbjct: 848  MAIVIGLLCVFCVLVLLFHDFFQPLTILSAVPLSLGGAFVALLLSKGMLSIPSMIGLVML 907

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +     M ++   +S  + +  + ++     V T++A    +LP+A+ 
Sbjct: 908  MGIVTKNSILLVE--HAVMGIHERGLSMHEALIDACHKRARPIVMTTVAMIAGMLPIALG 965

Query: 789  WGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G         AI +  G+V +   S+ +      F+     +
Sbjct: 966  LGADASFRQPMAIAVIGGLVTSTGLSLLVVPVAFTFVDGLERR 1008


>gi|146277202|ref|YP_001167361.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555443|gb|ABP70056.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 1025

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 70/539 (12%), Positives = 146/539 (27%), Gaps = 39/539 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L S I  IG             + ++P                         
Sbjct: 9   RRPVASTVLASFILLIGFYSIF-----NLPVRQYPEVEETVVT---------ITTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+        +  +         R   + +++        +    +V   +Q 
Sbjct: 55  SPELIQGFITAPIARAVATTENIDYVTSQSRPSASIVSVQMKLGANSDVALTEVLAKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  + +  ++V  T    +++            A + +  + R    ++   E   
Sbjct: 115 VRGELPSEAEDPVIVKGTGDNFALMY--LAALNPNMSAEQMTEYLERVIRPRMSTIEGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     T +++       N           +   +   Q 
Sbjct: 173 EIQIIGAAEYAMRVWIDPMKLAARNVTASEVLTAIRASNFLSAPGKTEGEYFARAIKLQS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +     G           +    A      
Sbjct: 233 TLQTPEAFGA--------------------LPIRSDGDEVVRLRDVAEVELASAEPDSIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T          + A         +   +      S   
Sbjct: 273 TFNGQPGTFIGIFPTPAANPLTTASAVIEELPAINATLPRGMEINLVYDSTETITASIVE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +V++V+ + +   +  L+   +I L++I   A+L  LG ++ L S+  +V
Sbjct: 333 VFKTLAEAVAIVVVVILLFLGSFRSVLMPIVTIPLSLIGVCAVLLALGYSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +  + + +   G       +    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIDEGMTPYAAAIKGMREITGPVIAMTITLAAVLAPLGFSG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
              G     FA  +  S++IS   A++I   M   +++                   + 
Sbjct: 453 GLTGSLFSEFAFALAGSVIISGVVALTITPMMSARLLKEGSGSRFQRIVDRTLEGTANW 511



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 53/135 (39%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ L +          G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLMPIVTIPLSLIGVCAVLLALGYSINLLSLLAMVLAIGLVVDDAIVVVENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     ++      K + E  G  +  ++     + P+   G   GS+   FA  +A
Sbjct: 411 ---RHIDEGMTPYAAAIKGMREITGPVIAMTITLAAVLAPLGFSGGLTGSLFSEFAFALA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++   ++ I  
Sbjct: 468 GSVIISGVVALTITP 482



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++    + + + + +  +F+ +      + ++ L I   +    L     N+     ++T
Sbjct: 849  LLAFAAAVVVIYLVLAAQFESFRDPFIIMMSVPLSIFGAILPLNLGLGTLNIYTQVGLIT 908

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG      +++ +    N +     ++ R  I  +    L   + T+ A  ++V+P+ +
Sbjct: 909  LIGLITKHGILMVE--FANQQREQHGLNRRQAIVAAAKVRLRPILMTTAAMALAVVPLII 966

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G     +  I +  G+++    ++F+      FI  
Sbjct: 967  AEGAGAEARQAMGIVIFTGLLIGTCFTLFVVPMFYTFISK 1006


>gi|153208448|ref|ZP_01946751.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212218537|ref|YP_002305324.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuK_Q154]
 gi|120575994|gb|EAX32618.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212012799|gb|ACJ20179.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuK_Q154]
          Length = 1019

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 74/602 (12%), Positives = 174/602 (28%), Gaps = 44/602 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I  +GL       + +  + ++P                          
Sbjct: 13  RPVLAIVVSLFIFILGL-----RAITEMEVRQYPKMNNTLIT---------ISTAYPGAP 58

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              + GF+    ++  +  +       +  Q  + I +    +         +   +  V
Sbjct: 59  ASLIEGFITTRLEKSIAGAEGIDYMTSTSTQGVSTINVFIKLNFDPNVAFTDIMSKVAQV 118

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  + +  ++   T  + +++    + DQ+ S   + S  + R    +I       Q
Sbjct: 119 QNDLPRESQLPVIQKLTGTQTALMYISFSSDQMSSE--QISDYLNRVVQPKIETVFGVSQ 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +  R+  L  T   ++   +  N                D     
Sbjct: 177 AEILGGQTFAMRVWLNTKRMAALNVTPTDVTQALINNNFQSAAGQTK------GDFITLY 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++ K +I                 +   ++   E+            +            
Sbjct: 231 IKAKTDIG--------------DKQAFENLVIKEVNGTLIRIRDIGRVELGAEDYDSSVY 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +          +     +    I     +   L     P   + V          S    
Sbjct: 277 MNGKSAIFVAVNTTPTANPLSVIANVKKILPDLEKEYPPSLHSKVVYDATEYIQASIYEV 336

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +V++V+F+ +   +  ++   +I L++I    L+  LG +L L ++  +VL
Sbjct: 337 IRTIFEATLIVIVVIFLFLGSIRTVVIPVITIPLSLIGVCFLMWFLGYSLNLLTLLSMVL 396

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
            IGL VD  I+V E +     +    F +   G       I    +T       + F   
Sbjct: 397 AIGLVVDDAIVVVENVYRHIEEGMDGFHAAIRGAREIAFPIISMTLTLAAVYAPIGFMTG 456

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFFLI 534
             G     FA T+  ++++S   A+++   M    +     K      ID +        
Sbjct: 457 LTGALFTEFAFTLAGAVIVSGIIALTLSPMMCSKFLNQNIGKQRYVQFIDRSFERLKQFY 516

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +           +    + + C I  + T       + +G + +   A +  ++  V
Sbjct: 517 SRRLHGVLNHRFLMVLLAVAVLASCFIFYMNTTSELAPEEDQGALFVQAQAPQYANIDYV 576

Query: 595 RS 596
            +
Sbjct: 577 EA 578



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 84/242 (34%), Gaps = 8/242 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L +L   +I+ Q         +              + E +         +     +   
Sbjct: 778  LSTLVKMNITTQPNLLSHFQQLNSAQIDAVLAPGHTMGEALTYLEQTANKVLARDMSYDF 837

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALF 714
            G ++ + +     + V      ++IY+ +      +      + ++ + I   L F  L 
Sbjct: 838  GGQMRQFVQEGQALVVTFFLAIIIIYLVLAAQFESFRDPFVILISVPMSICGALIFLNLG 897

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                N+     ++TLIG      +++ +    N       +S R+ I+KS    L   + 
Sbjct: 898  LATINIYTQIGLVTLIGLISKHGILMVE--FANKLQEEEGLSVREAIEKSAAIRLRPILM 955

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+ A  + V+P+ +    G        + +A G+++    ++F+   + L I        
Sbjct: 956  TTAAMVLGVVPLILATGAGAVSRFDIGLVIATGMLIGTMFTLFVVPTMYLLIAKKHQPLR 1015

Query: 832  RI 833
            ++
Sbjct: 1016 KV 1017



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 6/239 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V         + R  L +       + N        V              V +++   
Sbjct: 250 EVNGTLIRIRDIGRVELGAEDYDSSVYMNGKSAIFVAVNTTPTANPLSVIANVKKILPDL 309

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             E  P    +        I   +          + I +++           +  + T+ 
Sbjct: 310 EKEYPPSLHSKVVYDATEYIQASIYEVIRTIFEATLIVIVVIFLFLGSIRTVVIPVITIP 369

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +          G   NL  + +++  IG  V+D +VV + +    +     +      
Sbjct: 370 LSLIGVCFLMWFLGYSLNLLTLLSMVLAIGLVVDDAIVVVENV---YRHIEEGMDGFHAA 426

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +   E     +  ++       P+       G++   FA  +A  ++V+   ++ ++ 
Sbjct: 427 IRGAREIAFPIISMTLTLAAVYAPIGFMTGLTGALFTEFAFTLAGAVIVSGIIALTLSP 485


>gi|91774567|ref|YP_544323.1| acriflavin resistance protein [Methylobacillus flagellatus KT]
 gi|91708554|gb|ABE48482.1| acriflavin resistance protein [Methylobacillus flagellatus KT]
          Length = 1026

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 64/617 (10%), Positives = 161/617 (26%), Gaps = 54/617 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +    ++  ++  +G++      + +     FP                     L   
Sbjct: 9   KRHVLAWMVSGLLVLLGIISYQRIGVDRLPYIEFPVISITT--------------TLTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D ++  +    +   +          S     + IT++F+  +  +   ++V   +  
Sbjct: 55  NPDVIDASITSIIESSVNTTPGIEHIQSSSSPGVSVITITFSLEKNIDVAYNEVQAKVSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D     +         I+       +      + ++        ++       
Sbjct: 115 VLRRLPDDADPPQVQKVETNAQPIMWLAL---RGDRTIQQINLYGFNVIKKKLETINGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    +     P R+     T   +       +    G                
Sbjct: 172 EVRLGGRRDRTIRVNVLPERMAAYNITATDLIDAFRREHVQLPGGFLVG----------- 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         I     GA        +            R
Sbjct: 221 --------ENAEYLMKLDMEFHNLRDMAEMIVAYRDGAAIKLRQIAELEDGVADYRQLAR 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P +   I       +     E    L   +R    P     +   +          
Sbjct: 273 YKGNPAVGLGIVKVSNANTVAIIDEVLRKLDTEIRPSLPPGMTLDISTNDALFIEEIVGA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        L  +++++ +   +  L+   +I ++++ ++A++   G T    ++  ++
Sbjct: 333 LQEHLVEGTLLAALIVWLFLRSVRSTLIIATAIPVSLLGSIAVMYFSGFTFNTMTLLALL 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDM-----------GFSRAYSTIFDSNITA 470
           L IG+ VD  I+V E I    R       + D                A++ I  +    
Sbjct: 393 LLIGVVVDDAIVVLENIYRHLRLRAQQEPAADSGTIARAAAITGSREVAFAVIAATFSLV 452

Query: 471 LIATVVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            I   V+F  G  G   + FA+ +   +L+S+  ++++   +    ++  + +      +
Sbjct: 453 CIFAPVIFMEGIIGKFFKSFAVVVTFGVLVSLLVSLTLTPMLCSRYLKTHEPEGRFYGWM 512

Query: 529 SRFFLIPDCIA-----IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
            R F   D +                +   ++                    +G   +  
Sbjct: 513 DRLFHRMDHLYAGMLAWTLRHRWKVMLLTVLVVVSSGFFFGKVQKEFIPDSDEGRFLISF 572

Query: 584 LANRPVDLSVVRSNLES 600
                  +    S LE 
Sbjct: 573 RTPLGSSIEYTNSRLEK 589



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/159 (17%), Positives = 63/159 (39%), Gaps = 9/159 (5%)

Query: 674  IISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
                  +L+Y+ +  ++  F    I  L   +    G FAL       N+ ++  ++ LI
Sbjct: 864  AFGLALVLLYMVLASQFNSFLQPLIIMLAQPLAIIGGVFALWITNNSLNIFSMIGLVLLI 923

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ D      +L+    S  D + ++    L   + TS+   +++LP A   
Sbjct: 924  GLVAKNSILLID---LTNQLHEEGKSVDDALREACPIRLRPVLMTSLTIILALLPAAFGL 980

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              G    G  +I +  G++ +   ++ +       I + 
Sbjct: 981  GAGAETNGPLSIAVIGGMISSTLLTLVVVPAAYSLIMNK 1019



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 89/255 (34%), Gaps = 15/255 (5%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +   L+        +   ++A R      +R   E         Q    + N  V L   
Sbjct: 225 YLMKLDMEFHNLRDMAEMIVAYRDGAAIKLRQIAELEDGVADYRQLARYKGNPAVGLGIV 284

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-----ISAIA 679
              +     +++ V +K+   +  S      +         I + +  +       + +A
Sbjct: 285 KVSNANTVAIIDEVLRKLDTEIRPSLPPGMTLDISTNDALFIEEIVGALQEHLVEGTLLA 344

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            LI           L   T + + +  ++      G  FN   + A+L LIG  V+D +V
Sbjct: 345 ALIVWLFLRSVRSTLIIATAIPVSLLGSIAVMYFSGFTFNTMTLLALLLLIGVVVDDAIV 404

Query: 740 VYDRMRKNMKLYTTSISFRDL--IDKSINETLGR----SVYTSMAAFISVLPMAVWGGSV 793
           V + + ++++L        D   I ++   T  R    +V  +  + + +    ++   +
Sbjct: 405 VLENIYRHLRLRAQQEPAADSGTIARAAAITGSREVAFAVIAATFSLVCIFAPVIFMEGI 464

Query: 794 I----GSFAIPMAFG 804
           I     SFA+ + FG
Sbjct: 465 IGKFFKSFAVVVTFG 479


>gi|29654400|ref|NP_820092.1| AcrB/AcrD/AcrF family transporter [Coxiella burnetii RSA 493]
 gi|161831343|ref|YP_001596969.1| RND efflux transporter [Coxiella burnetii RSA 331]
 gi|165919142|ref|ZP_02219228.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii RSA 334]
 gi|29541667|gb|AAO90606.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           RSA 493]
 gi|161763210|gb|ABX78852.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii RSA 331]
 gi|165917154|gb|EDR35758.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii RSA 334]
          Length = 1019

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 74/602 (12%), Positives = 174/602 (28%), Gaps = 44/602 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I  +GL       + +  + ++P                          
Sbjct: 13  RPVLAIVVSLFIFILGL-----RAITEMEVRQYPKMNNTLIT---------ISTAYPGAP 58

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              + GF+    ++  +  +       +  Q  + I +    +         +   +  V
Sbjct: 59  ASLIEGFITTRLEKSIAGAEGIDYMTSTSTQGVSTINVFIKLNFDPNVAFTDIMSKVAQV 118

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  + +  ++   T  + +++    + DQ+ S   + S  + R    +I       Q
Sbjct: 119 QNDLPRESQLPVIQKLTGTQTALMYISFSSDQMSSE--QISDYLNRVVQPKIETVFGVSQ 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +  R+  L  T   ++   +  N                D     
Sbjct: 177 AEILGGQTFAMRVWLNTKRMAALNVTPTDVTQALINNNFQSAAGQTK------GDFITLY 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++ K +I                 +   ++   E+            +            
Sbjct: 231 IKAKTDIG--------------DKQAFENLVIKEVNGTLIRIRDIGRVELGAEDYDSSVY 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +          +     +    I     +   L     P   + V          S    
Sbjct: 277 MNGKSAIFVAVNTTPTANPLSVIANVKKILPDLEKEYPPSLHSKVVYDATEYIQASIYEV 336

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +V++V+F+ +   +  ++   +I L++I    L+  LG +L L ++  +VL
Sbjct: 337 IRTIFEATLIVIVVIFLFLGSIRTVVIPVITIPLSLIGVCFLMWFLGYSLNLLTLLSMVL 396

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
            IGL VD  I+V E +     +    F +   G       I    +T       + F   
Sbjct: 397 AIGLVVDDAIVVVENVYRHIEEGMDGFHAAIRGAREIAFPIISMTLTLAAVYAPIGFMTG 456

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFFLI 534
             G     FA T+  ++++S   A+++   M    +     K      ID +        
Sbjct: 457 LTGALFTEFAFTLAGAVIVSGIIALTLSPMMCSKFLNQNIGKQRYVQFIDRSFERLKQFY 516

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +           +    + + C I  + T       + +G + +   A +  ++  V
Sbjct: 517 SRRLHGVLNHRFLMVLLAVAVLASCFIFYMNTTSELAPEEDQGALFVQAQAPQYANIDYV 576

Query: 595 RS 596
            +
Sbjct: 577 EA 578



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 84/242 (34%), Gaps = 8/242 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L +L   +I+ Q         +              + E +         +     +   
Sbjct: 778  LSTLVKMNITTQPNLLSHFQQLNSAQIDAVLAPGHTMGEALTYLEQTANKVLARDMSYDF 837

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALF 714
            G ++ + +     + V      ++IY+ +      +      + ++ + I   L F  L 
Sbjct: 838  GGQMRQFVQEGQALVVTFFLAIIIIYLVLAAQFESFRDPFVILISVPMSICGALIFLNLG 897

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                N+     ++TLIG      +++ +    N       +S R+ I+KS    L   + 
Sbjct: 898  LATINIYTQIGLVTLIGLISKHGILMVE--FANKLQEEEGLSVREAIEKSAAIRLRPILM 955

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+ A  + V+P+ +    G        + +A G+++    ++F+   + L I        
Sbjct: 956  TTAAMVLGVVPLILATGAGAVSRFDIGLVIATGMLIGTMFTLFVVPTMYLLIAKKHQPLR 1015

Query: 832  RI 833
            ++
Sbjct: 1016 KV 1017



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 6/239 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V         + R  L +       + N        V              V +++   
Sbjct: 250 EVNGTLIRIRDIGRVELGAEDYDSSVYMNGKSAIFVAVNTTPTANPLSVIANVKKILPDL 309

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             E  P    +        I   +          + I +++           +  + T+ 
Sbjct: 310 EKEYPPSLHSKVVYDATEYIQASIYEVIRTIFEATLIVIVVIFLFLGSIRTVVIPVITIP 369

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +          G   NL  + +++  IG  V+D +VV + +    +     +      
Sbjct: 370 LSLIGVCFLMWFLGYSLNLLTLLSMVLAIGLVVDDAIVVVENV---YRHIEEGMDGFHAA 426

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +   E     +  ++       P+       G++   FA  +A  ++V+   ++ ++ 
Sbjct: 427 IRGAREIAFPIISMTLTLAAVYAPIGFMTGLTGALFTEFAFTLAGAVIVSGIIALTLSP 485


>gi|307102942|gb|EFN51207.1| hypothetical protein CHLNCDRAFT_141178 [Chlorella variabilis]
          Length = 741

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 111/606 (18%), Positives = 248/606 (40%), Gaps = 31/606 (5%)

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
            V ++G  +               +  S  +                 LA  L       
Sbjct: 80  TVGLTGQSVKDGVTLGVEFGGGYQLMYSCYQKEGGPPVTDETMQEQGTLAFELCEENGQP 139

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
                 +   K Q+      +T+ I   +     LP+ + +    ++    G D ++K  
Sbjct: 140 NAQVTVLLPSKIQMVLPGVSDTSEIGPILEGLEELPLGMQVRSAISMSGTQGKDDLHKTV 199

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A    L ++   +++ Y   GL+  F   + + L L L +     L+  +I  +VL IG
Sbjct: 200 VAAGIALGIVWAGLVLRYRAAGLLGFFLSVVFLWLHLVLFNASSYALSDAAIVAVVLNIG 259

Query: 426 LAVDSNILVNERIREENRK------NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           LA D++I+  ER+RE+               +L      +  T+ ++NIT ++A VVL+ 
Sbjct: 260 LAADAHIIAFERVREDLHALPRGAGRPQGLAALHSALRISLITVLEANITTMLAMVVLYG 319

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR---------------------YK 518
            G G    FA T+ +S+  S+   + + RA++                           +
Sbjct: 320 VGTGGTVEFAFTVIISVCASILINVLLARALLRLAWNAQLVSCGGFFGDKGPVYDEERKE 379

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
           K + I+   L  ++     + + F+R  + G  +++   I    +L   GLN+G+D+  G
Sbjct: 380 KYERINRWVLWPYWKPKRRVTLDFVRYWWTGALVTLAVIIGGSVMLGVEGLNWGVDYTAG 439

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             + +    P D +       +    + +      +    V L+++          ++++
Sbjct: 440 TSVSMRIPPPYDYTCDSVIRYAEYRTNTTVSRCTMDDVGHVDLKFK---DAVDPYNVQLI 496

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
             +IT ++    + N   +  +++++  +K ++ + +SA     ++ +RF   F+   + 
Sbjct: 497 IFRITNVLGGPIVYNEYTIDNELAKDQSKKAVIAMCVSAAVTCAFLLLRFGPGFSSSGLL 556

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++      T+  FA+   E NL  V+A+LT   Y++ND VVV   + ++      + + +
Sbjct: 557 SMASTAIFTVMCFAMGQWEVNLPTVSALLTAFSYAINDCVVVAKEV-EDGGTVDNAAALK 615

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            +++++++    RS+ T     +  L + + GG+ + SF++ + FG++ A  +++ +  P
Sbjct: 616 SVVNRAMSLVTIRSLLTLETVMVCSLMIVIMGGASLHSFSLAVTFGLLNATYTTLLVCTP 675

Query: 819 ILLFIY 824
               + 
Sbjct: 676 FWYLLR 681


>gi|293192655|ref|ZP_06609609.1| protein-export membrane protein SecD [Actinomyces odontolyticus
           F0309]
 gi|292820162|gb|EFF79159.1| protein-export membrane protein SecD [Actinomyces odontolyticus
           F0309]
          Length = 646

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 115/526 (21%), Positives = 213/526 (40%), Gaps = 52/526 (9%)

Query: 46  LGLDLRGGSHLVLEVDED-----DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKIT 99
           L LDL+GG+ L+L                +      +R+ +   G+    +     + I 
Sbjct: 33  LALDLKGGTQLILTPTPTSEGQRAITEEDITQAIAIIRNRIDASGVSESEISSMGSSNIM 92

Query: 100 LSFADSRFKENIADKVTL----------FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
           +S       +   D +             +      L    +  +    +  +      +
Sbjct: 93  VSIP-GTPSQEQLDLIRSSSQMNFRPVLRIGPAQGILQNQQQPQVDNPQSGAQSGAQSGE 151

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ--RLGSHRILIQLPGEQDPSRLRQLLG 207
            +  Q    +   + +  +  I    + E+T +         ++       P     L  
Sbjct: 152 QSGAQSGEQSGAGAADTAQSGIQSTALDEATARGAADADGDGVLSDTPATTPENASDLAW 211

Query: 208 TTAKMS-------FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLN----- 255
            T ++                  +G         D  G    +   V + G  L      
Sbjct: 212 VTEQVMYDFLTLDCSASADVKRVEGAADKPYAACDESGQVKYILGPVAVPGSDLEAASAA 271

Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG-----------------KPLAVVL 298
            AT      T + +V + F+  GA +F E +    G                    AVVL
Sbjct: 272 IATNGTGQSTGQWIVSLRFNHEGAEKFKETSTILYGYHDSDPQGSSYRGSPDRNSFAVVL 331

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG V+TAP +   I +G+AQISGNFT ++A  LA  L+ GSLP+   +  E+ + A +G+
Sbjct: 332 DGTVITAPSMQAIITNGEAQISGNFTAQSARALANQLQFGSLPLNFEVESEQQISATIGT 391

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TL 414
           D +  G  A + G +L++L++I  Y    +++  S+ +  ++T  +++LL   +    +L
Sbjct: 392 DHLTVGLWAALIGFLLVILYLIWQYRGLAIISAGSLVVASVITYLVITLLSWAMGYRLSL 451

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
             +AG+++ IG+  DS I+  ER+R+E R  + +  +++ G+ RA  TI  S+   ++A 
Sbjct: 452 AGVAGLIMAIGVTTDSFIVYFERVRDEVRDGRPLRAAVEEGWDRAKRTILISDAVNMVAA 511

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           VVL+    G V+GFA T+G++ +I +         MM  +IR +  
Sbjct: 512 VVLYLLAVGGVQGFAFTLGITTIIDIAVIFLFTHPMMELLIRTRFF 557



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 22/206 (10%), Positives = 78/206 (37%), Gaps = 6/206 (2%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G+  AQ+      + +   +     +++ + +   I  + +  G+   +I  + +++Y+
Sbjct: 353 SGNFTAQSARALANQLQFGSLPLNFEVESEQQISATIGTDHLTVGLWAALIGFLLVILYL 412

Query: 685 WIRFKWYFALGA---ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
             +++    + A   +   ++            G   +L  VA ++  IG + +  +V +
Sbjct: 413 IWQYRGLAIISAGSLVVASVITYLVITLLSWAMGYRLSLAGVAGLIMAIGVTTDSFIVYF 472

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++        R  +++  +      + +     ++ + + +     +  FA  +
Sbjct: 473 ERVRDEVRD---GRPLRAAVEEGWDRAKRTILISDAVNMVAAVVLYLLAVGGVQGFAFTL 529

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWR 827
               ++  +       P++  +   R
Sbjct: 530 GITTIIDIAVIFLFTHPMMELLIRTR 555


>gi|238753855|ref|ZP_04615215.1| Multidrug resistance protein mdtC [Yersinia ruckeri ATCC 29473]
 gi|238707843|gb|EEQ00201.1| Multidrug resistance protein mdtC [Yersinia ruckeri ATCC 29473]
          Length = 994

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 66/556 (11%), Positives = 157/556 (28%), Gaps = 30/556 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L   + + +   +    +     +        S      +I L F  +R     A 
Sbjct: 17  VSASLPGADPETMASSVATPLERALGRIAGVNEMTSSSSLGSTRIILQFDLNRDINGAAR 76

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   L    S L                 + ++    +     +  +       +   +
Sbjct: 77  DVQAALNAAQSLLPSGMPNRPTYRKVNPSDAPIMI-LTLTSDTYNQAQLYDLASTKLAQK 135

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I  +            L  +  E +PS L     +   +       N  +          
Sbjct: 136 IAQTAGVSDVSVGGSSLPAVRIELNPSALFNQGVSLDAVRQSIAAANVRRPQGSVEADRQ 195

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           R        ++                           +                N+   
Sbjct: 196 RWQVQANDEIKTAA--------------------GYRPLIIHYNNGSPVRLSDVANVVDS 235

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +  V +  +         + S +   +   T+         LRA         + +    
Sbjct: 236 VQDVRNAGMSDGKPAILLVVSREPGANIIATVNRIRAELPALRASIPAAVQLNIAQDRSP 295

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + +  I   LV++V+F+ +  G+  L+   ++ +++I T   + L G +L 
Sbjct: 296 TIRASLDEVEQSLIIAITLVILVVFLFLRSGRATLIPAVAVPVSLIGTFTAMYLCGFSLN 355

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I+V E I            +  +G      T+   +++ +  
Sbjct: 356 NLSLMALTIATGFVVDDAIVVLENISRHIDAGMKPLPASLLGVREVGFTVLSMSVSLVAV 415

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSID 524
            + L    G      R FA+T+ ++I IS+  ++++   M   +          +++   
Sbjct: 416 FIPLLLMDGLPGRLFREFAVTLSVAIGISLLISLTLTPMMCAHLLKARPERERPRIRGFG 475

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
              L         +      AR+  V +    ++     +      +     G +   + 
Sbjct: 476 KLLLRIQQGYGRSLNWVLDHARWVLVVLLSTMALNVWLYISIPKTFFPEQDTGRMMGFIQ 535

Query: 585 ANRPVDLSVVRSNLES 600
           A++ +    ++  L+ 
Sbjct: 536 ADQRISFQAMKLKLQD 551



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +      PV LS V + ++S+Q    +  +       LV  +    + +A    +     
Sbjct: 216 IHYNNGSPVRLSDVANVVDSVQDVRNAGMSDGKPAILLVVSREPGANIIATVNRIRAELP 275

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITT 699
            +   +P +   N         R  + +    +II+   +++ +++  +     L     
Sbjct: 276 ALRASIPAAVQLNIAQDRSPTIRASLDEVEQSLIIAITLVILVVFLFLRSGRATLIPAVA 335

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T     L G   N  ++ A+    G+ V+D +VV + +    +     +    
Sbjct: 336 VPVSLIGTFTAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRHIDAGMKPLP 392

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                + E     +  S++     +P+ +     G +   FA+ ++  I ++   S+ + 
Sbjct: 393 ASLLGVREVGFTVLSMSVSLVAVFIPLLLMDGLPGRLFREFAVTLSVAIGISLLISLTLT 452

Query: 817 A 817
            
Sbjct: 453 P 453



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/214 (15%), Positives = 92/214 (42%), Gaps = 6/214 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            + +   D  + +     +++ +TE+   S ++ +     ++ ++ ++  ++ ++ +   
Sbjct: 773 TISFNLSDGYSLSDATAAIERTMTELGVPSEVRGSFAGTAQVFQDTLKSQLLLILAAIAT 832

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 833 VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIVKKNAI 892

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
           ++ D      +     +S R+ I ++        + T++AA    LP+ +    G  +  
Sbjct: 893 MMVDFALDAQRNG--HLSAREAIFQASLLRFRPIMMTTLAALFGALPLVLGSGDGAELRQ 950

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              I +  G++V+   +++    + L+    R +
Sbjct: 951 PLGITIVGGLMVSQLLTLYTTPVVYLYFDRLRRR 984



 Score = 39.3 bits (89), Expect = 3.1,   Method: Composition-based stats.
 Identities = 50/517 (9%), Positives = 142/517 (27%), Gaps = 39/517 (7%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
            ++  +  +              FP       +     ++    +  +      +   LQ
Sbjct: 499 VLVVLLSTMALNVWLYISIPKTFFPEQDTGRMMGF---IQADQRISFQ-----AMKLKLQ 550

Query: 72  MYSDELRS--FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
            +   + +   +          R     + +S      +   A +V   L+G  +K    
Sbjct: 551 DFMKIVSADPAVDNVTGFTGGSRTNSGSMFISLKPLAERTETAQQVIARLRGKLAKEP-- 608

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                        + +   Q+               +    ++ +   E  I+   +   
Sbjct: 609 ----------GASLFLAAVQDIRIGGRQSNAAYQYTLQADDLNALRSWEPKIRTALAKLP 658

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
            +         +  +L  T  + +  ++  + +    +    F +      Y   ++ ++
Sbjct: 659 QLADVNSDQQDKGAELGLTYDRETMSRLGISVTDANALLNNAFGQRQISTIYQPLNQYKV 718

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                   T +        V++ +   +    F      N            +       
Sbjct: 719 VMEVAPQYTQDVSSLDKMFVINPAGQAIPLSYFARWQPAN----------APLAVNHQGL 768

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
            A  +    +S  +++  A                                  +    + 
Sbjct: 769 SAASTISFNLSDGYSLSDATAAIERTMTELGVPSEVRGSFAGTAQVFQDTLKSQLLLILA 828

Query: 370 AGLVLIVLFMIVL--YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           A   + ++  I+   Y     +   ++    +  L  L L  A  +L ++ GI+L IG+ 
Sbjct: 829 AIATVYIVLGILYESYVHPLTI-LSTLPSAGVGALLALELFDAPFSLIALIGIMLLIGIV 887

Query: 428 VDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGG 483
             + I++ +   +  R    S   ++       +  I  + + AL   + L      G  
Sbjct: 888 KKNAIMMVDFALDAQRNGHLSAREAIFQASLLRFRPIMMTTLAALFGALPLVLGSGDGAE 947

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             +   IT+   +++S    +     + ++  R ++ 
Sbjct: 948 LRQPLGITIVGGLMVSQLLTLYTTPVVYLYFDRLRRR 984


>gi|327313327|ref|YP_004328764.1| RND transporter, HAE1 family [Prevotella denticola F0289]
 gi|326944933|gb|AEA20818.1| RND transporter, HAE1 family [Prevotella denticola F0289]
          Length = 1087

 Score =  147 bits (370), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 75/699 (10%), Positives = 183/699 (26%), Gaps = 56/699 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++      +G +      L    ++++P   P               + +   
Sbjct: 8   KRPVLSTVISIFFVLLGAI-----GLVSLPIEQYPDIAPPT-------------ISIMTS 49

Query: 62  EDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                   +       L   +   E +         N    IT+ F      +  A  V 
Sbjct: 50  YQGADAQTVLNSVITPLEESINGVENMTYMQSTATNNGTAMITVYFKQGSDPDMAAVNVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    + L  +  +  +  +  +  ++V+     D         +       +  +  
Sbjct: 110 NRVSQAQALLPAEVTRVGVTVSKRQTSNVVMYSLTTDDGRYDDEFLTNYNNINIVPMLKR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +     P +++Q     + +S      N       FG +     
Sbjct: 170 ISGVGDVQTPGVKTYSMRIWLQPEKMKQYGLVPSDISGALAEQNIEAAPGSFGEQSNLKY 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                         +    I       +         +      
Sbjct: 230 ----------------EYTMCYKGRLKTPEEYGNIIISSNTNGQTLHLRDVAKVEMGGLQ 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          + +  A  +            A  +    P     +E+       
Sbjct: 274 YSVAMKNNNRPAVIGMVNQIAGSNATDIANNVKAALADAQKQMPPGMKVTIEQDVTEFLF 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   LV  V+++ +   +  L+   ++ + +I T   L + G ++ L +
Sbjct: 334 ASIEEVIRTLIITLVLVFFVVYVFLQDFRSTLIPMIAVPVALIGTFFFLWVFGFSINLLT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ ++L I + VD  I+V E +  +   +  S   +     +     I    +      V
Sbjct: 394 LSALLLAIAIVVDDAIVVVEAVHAKLDLDYKSALTAAIDAMNEISGAIISITLVMSAVFV 453

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM----KSIDINPL 528
            + F GG +    R F +TM +SI+IS   A+++  A+    ++        K +     
Sbjct: 454 PVSFIGGTSGTFYREFGVTMAVSIVISALNALTLSPALCAIFLKPHGKDEEGKKLSRIDR 513

Query: 529 SRFFLIPDCIAIQ---------FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                      +           +  ++      ++  I  +  +         D   G 
Sbjct: 514 FHAAFNVQYEKVNGKYQKIVEKIIGHQWISGIAVVVGVIALVLAMTFTKTGLVPDEDTGT 573

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              +++  P         +       ++   +   +  +V   +  G    Q   +  +K
Sbjct: 574 LFAMVSMSPGTSQAETQKVTDQIDKMLASNPYIERREQIVGYNFLAGQGSDQATFIIKLK 633

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                   L     +   G  I+   I      +++  I
Sbjct: 634 PFAEREYGLFDRIKSVFTGAGIAGLFIDPTSSNMVLGMI 672



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/387 (9%), Positives = 103/387 (26%), Gaps = 30/387 (7%)

Query: 468  ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
               +IA       G     G + ++       +    +I +  +  + +  +        
Sbjct: 681  GAQVIAFAPPMIPGYAMSNGLSFSLEDRTGGDLNKFFNIAQTYLKELNKRPEFSRALTTY 740

Query: 528  LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYG--------------- 572
               +      + +   +         +         ++    N                 
Sbjct: 741  NPNYPQYMVDVDVAKAKQAGTSPAAILSVLQGYYGGMYASNFNAYGKLFRVMIQGTAESR 800

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +   G   + V     +       +L+ +       +        +         S    
Sbjct: 801  MSESGLSNIYVRTASGMAPVNEFCSLKRVYGPSNIARFNLFTSISVTATPADGYSSGQAI 860

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFK 689
            +  E V K++                 + S          +I     + +Y+ +      
Sbjct: 861  QAAEEVAKQVLPQGYSYEFSGLTRSEQESSNS------TAMIFILCFVFVYLILSAQYES 914

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            +   L  I ++   +     F  LFG   ++    +++ L+G    + +++ +   +   
Sbjct: 915  YILPLAVILSIPFGLAGAFIFTMLFGHSNDIYMQISLIMLVGLLAKNAILIVEFALE--- 971

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
               T ++ +          L   + TS+A  I +LP+    G       +       G++
Sbjct: 972  RRRTGMAIKYAAILGAGARLRPILMTSLAMVIGLLPLMFASGVGHNGNQTLGAAAVGGML 1031

Query: 807  VAASSSIFIAAPILLFIYDWRAKNARI 833
            +     +F+   +       + +   +
Sbjct: 1032 IGTLCQVFVVPALFSVFQYLQERIKPL 1058


>gi|154707610|ref|YP_001424556.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           Dugway 5J108-111]
 gi|154356896|gb|ABS78358.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           Dugway 5J108-111]
          Length = 1019

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 74/602 (12%), Positives = 174/602 (28%), Gaps = 44/602 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++   I  +GL       + +  + ++P                          
Sbjct: 13  RPVLAIVVSLFIFILGL-----RAITEMEVRQYPKMNNTLIT---------ISTAYPGAP 58

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              + GF+    ++  +  +       +  Q  + I +    +         +   +  V
Sbjct: 59  ASLIEGFITTRLEKSIAGAEGIDYMTSTSTQGVSTINVFIKLNFDPNVAFTDIMSKVAQV 118

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  + +  ++   T  + +++    + DQ+ S   + S  + R    +I       Q
Sbjct: 119 QNDLPRESQLPVIQKLTGTQTALMYISFSSDQMSSE--QISDYLNRVVQPKIETVFGVSQ 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +  R+  L  T   ++   +  N                D     
Sbjct: 177 AEILGGQTFSMRVWLNTKRMAALNVTPTDVTQALINNNFQSAAGQTK------GDFITLY 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++ K +I                 +   ++   E+            +            
Sbjct: 231 IKAKTDIG--------------DKQAFENLVIKEVNGTLIRIRDIGRVELGAEDYDSSVY 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +          +     +    I     +   L     P   + V          S    
Sbjct: 277 MNGKSAIFVAVNTTPTANPLSVIANVKKILPDLEKEYPPSLHSKVVYDATEYIQASIYEV 336

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +V++V+F+ +   +  ++   +I L++I    L+  LG +L L ++  +VL
Sbjct: 337 IRTIFEATLIVIVVIFLFLGSIRTVVIPVITIPLSLIGVCFLMWFLGYSLNLLTLLSMVL 396

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
            IGL VD  I+V E +     +    F +   G       I    +T       + F   
Sbjct: 397 AIGLVVDDAIVVVENVYRHIEEGMDGFHAAIRGAREIAFPIISMTLTLAAVYAPIGFMTG 456

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFFLI 534
             G     FA T+  ++++S   A+++   M    +     K      ID +        
Sbjct: 457 LTGALFTEFAFTLAGAVIVSGIIALTLSPMMCSKFLNQNIGKQRYVQFIDRSFERLKQFY 516

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +           +    + + C I  + T       + +G + +   A +  ++  V
Sbjct: 517 SRRLHGVLNHRFLMVLLAVAVLASCFIFYMNTTSELAPEEDQGALFVQAQAPQYANIDYV 576

Query: 595 RS 596
            +
Sbjct: 577 EA 578



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 84/242 (34%), Gaps = 8/242 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L +L   +I+ Q         +              + E +         +     +   
Sbjct: 778  LSTLVKMNITTQPNLLSHFQQLNSAQIDAVLAPGHTMGEALTYLEQTANKVLARDMSYDF 837

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALF 714
            G ++ + +     + V      ++IY+ +      +      + ++ + I   L F  L 
Sbjct: 838  GGQMRQFVQEGQALVVTFFLAIIIIYLVLAAQFESFRDPFVILISVPMSICGALIFLNLG 897

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                N+     ++TLIG      +++ +    N       +S R+ I+KS    L   + 
Sbjct: 898  LATINVYTQIGLVTLIGLISKHGILMVE--FANKLQEEEGLSVREAIEKSAAIRLRPILM 955

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+ A  + V+P+ +    G        + +A G+++    ++F+   + L I        
Sbjct: 956  TTAAMVLGVVPLILATGAGAVSRFDIGLVIATGMLIGTMFTLFVVPTMYLLIAKKHQPLR 1015

Query: 832  RI 833
            ++
Sbjct: 1016 KV 1017



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 69/239 (28%), Gaps = 6/239 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V         + R  L +       + N        V              V +++   
Sbjct: 250 EVNGTLIRIRDIGRVELGAEDYDSSVYMNGKSAIFVAVNTTPTANPLSVIANVKKILPDL 309

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             E  P    +        I   +          + I +++           +  + T+ 
Sbjct: 310 EKEYPPSLHSKVVYDATEYIQASIYEVIRTIFEATLIVIVVIFLFLGSIRTVVIPVITIP 369

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +          G   NL  + +++  IG  V+D +VV + +    +     +      
Sbjct: 370 LSLIGVCFLMWFLGYSLNLLTLLSMVLAIGLVVDDAIVVVENV---YRHIEEGMDGFHAA 426

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +   E     +  ++       P+       G++   FA  +A  ++V+   ++ ++ 
Sbjct: 427 IRGAREIAFPIISMTLTLAAVYAPIGFMTGLTGALFTEFAFTLAGAVIVSGIIALTLSP 485


>gi|189461796|ref|ZP_03010581.1| hypothetical protein BACCOP_02462 [Bacteroides coprocola DSM 17136]
 gi|189431556|gb|EDV00541.1| hypothetical protein BACCOP_02462 [Bacteroides coprocola DSM 17136]
          Length = 1077

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 68/534 (12%), Positives = 149/534 (27%), Gaps = 44/534 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G++      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILMVILGII-----GLATLPVTQYPDIAPPT-------------VSVRAAY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +        I   +       I++ F      +  A  V  
Sbjct: 51  TGANAQTVLNSVIAPLEDQINGVENMMYIQSSASNNGSADISIYFNQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  + T   +   +++      +   +            I ++   
Sbjct: 111 RVSMAQGLLPAEVTRVGVTTQKRQNSMLLIFSLYDAEDKYNIEFIENYAKINLIPEVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +     P  + Q     + +S      N       FG    R + 
Sbjct: 171 KGVGDANVMG-QDYSMRIWLKPDVMAQYNLVPSDISGVLAEQNIEAAPGQFGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +T +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQTEEFEDIVIKALPNGEVLRLGDVARIELGRLAY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     + +             V +        
Sbjct: 274 TFNNTVNGHKAVTCIVFQMAGTNATETINNLLDVISKAEESLPAGLKINVAQNANDFLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVIKTLIEAFILVFIVVYVFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSVNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIA 473
           + +VL I + VD  I+V E +  +  +   S   +     S    A  +I    ++  I 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSSREASIDAMSELGGALVSITLVMMSVFIP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
              +    G   R F ITM +SI  S   A+++  A+    ++    +      
Sbjct: 454 VSFMGGTAGTFYRQFGITMAISIAFSALNALTLSPALCAIFLKPHDSEHKPKKM 507



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/310 (10%), Positives = 87/310 (28%), Gaps = 28/310 (9%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                       +         ++     +   + +    + V +   +       +++ +
Sbjct: 749  MQGYFGGLYASNFNRFGKMYRVMIQAEPDATKNMESLNSIKVRSGNEMAPITQFVSMKKV 808

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               DI  +        ++        S    + +  V K+             E+ G   
Sbjct: 809  YGPDIINRFNLYTSMKVMVAPASGYTSGQALQAIAEVAKENLPAG-----FGYELGGMAR 863

Query: 662  SRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALF 714
                      G+I     + +Y+ +      +   L  + +    L+       GF AL 
Sbjct: 864  EEASTSGSTTGIIFVLCFVFVYLLLSAQYESYILPLAVLLSVPFGLMGSFIFVNGFGALG 923

Query: 715  GIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             I      +           A++ L+G    + +++ +     +      +S        
Sbjct: 924  NIPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFA---LDRRKQGMSISWAAVLG 980

Query: 765  INETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + TS+A  + +LP+   +G       +       G+++     IFI   + +
Sbjct: 981  AAARLRPILMTSLAMIVGLLPLMFAFGVGAHGNRTLGSSAIGGMLIGMILQIFIVPVLFV 1040

Query: 822  FIYDWRAKNA 831
                 + K  
Sbjct: 1041 IFQWLQEKIK 1050



 Score = 47.4 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 83/222 (37%), Gaps = 9/222 (4%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q    ++      L  V  K  E +P     N            I + I  +I + I
Sbjct: 288 IVFQMAGTNATETINNLLDVISKAEESLPAGLKINVAQNANDFLYASIHEVIKTLIEAFI 347

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I +++        L     + + +  T     L G   NL  ++A++  I   V+D 
Sbjct: 348 LVFIVVYVFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSVNLLTLSAMVLAIAIVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +   +       S R+    +++E  G  V  ++      +P++  GG+     
Sbjct: 408 IVVVEGVHAKLDQGYK--SSREASIDAMSELGGALVSITLVMMSVFIPVSFMGGTAGTFY 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFI---YDWRAKNARI 833
             F I MA  I  +A +++ ++  +       +D   K  ++
Sbjct: 466 RQFGITMAISIAFSALNALTLSPALCAIFLKPHDSEHKPKKM 507


>gi|226366284|ref|YP_002784067.1| preprotein translocase subunit SecD [Rhodococcus opacus B4]
 gi|226244774|dbj|BAH55122.1| protein-export membrane protein SecD [Rhodococcus opacus B4]
          Length = 556

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 115/525 (21%), Positives = 207/525 (39%), Gaps = 22/525 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FV 66
           L      + +L AL            P         LG+DL+GG+ + L     D     
Sbjct: 14  LTVFAVLVAVLYAL--VFFTGDKSATP--------KLGIDLQGGTRVTLTARTPDGSKPT 63

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKEN--IADKVTLFLQGVN- 123
              L+   + + + +   G+    +    + + ++       +   +     L+++ V  
Sbjct: 64  PDSLRQAQEIIETRVNGLGVSGSEVVIDGDNLVITVPGDDSAQARSLGQTARLYVRPVQT 123

Query: 124 -SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                    +      T  +                A + S         +   ++ +  
Sbjct: 124 SQAAAAAGTQAPAAGETPAQAPAGTETPAPQNRPFPAQDPSTSPEPAPTAEPAPADESGT 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                   I        S    +           V                  +DG    
Sbjct: 184 ETAQAADEIAAARATRQSTDPAVQQQAMATLDCSVPDPLRGNDDPALPLVACSTDGQAVY 243

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D   I G  +  AT+ ++ +  +  V ++F   G+  +   T  NIGK  A  LD +V
Sbjct: 244 LLDPAIIDGQEIADATSGYNSQQSRHEVSLTFKSEGSNTWATFTSQNIGKQAAFTLDSKV 303

Query: 303 LTAPVINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++APV+  A P      I+G+FT ++A  LA  L+ GSLP+     E   V A LG  S+
Sbjct: 304 VSAPVVQGATPAGSSTSITGSFTADSAKELANTLKYGSLPLSFAASEAETVSATLGLASL 363

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSI 417
             G  A + GLVL++L+ ++ Y   G++   S+ L+ ++  A++ LL      TL L  I
Sbjct: 364 EAGLIAGLVGLVLVLLYCLLYYRMLGVLTALSLVLSGVMVYAIMVLLGRYINFTLDLAGI 423

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG+++GIG+  DS ++  ERI++E R+ +S   ++  G++RA  TI   N  + IA  VL
Sbjct: 424 AGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWARARRTILSGNAVSFIAAAVL 483

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           +    G VRGFA T+GL+ ++ +     +   ++    +      
Sbjct: 484 YVLAVGQVRGFAFTLGLTTILDVVVVFLVTWPLVHLASKSPFWSR 528



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 7/133 (5%)

Query: 692 FALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +    +L+L          L G       +L  +A ++  IG + +  VV ++R++  
Sbjct: 388 LGVLTALSLVLSGVMVYAIMVLLGRYINFTLDLAGIAGLIIGIGMTADSFVVFFERIKDE 447

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SFR  + +         +  +  +FI+   + V     +  FA  +    ++
Sbjct: 448 MRE---GRSFRSAVPRGWARARRTILSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTIL 504

Query: 808 AASSSIFIAAPIL 820
                  +  P++
Sbjct: 505 DVVVVFLVTWPLV 517


>gi|301631139|ref|XP_002944664.1| PREDICTED: acriflavine resistance protein B-like, partial [Xenopus
           (Silurana) tropicalis]
          Length = 508

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 69/518 (13%), Positives = 143/518 (27%), Gaps = 29/518 (5%)

Query: 82  KKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
                     +      +TLSF      E     V   L   + +L     +  +     
Sbjct: 5   PGLIYMESVAQADGTGSLTLSFQPGTNAELAQVDVQNRLSRASPRLPAVVTQQGVRVDKS 64

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
           +   +++   +        +  S    R  + ++       Q          +    +P+
Sbjct: 65  RSNYLLIVMLSSKDPAFKTVALSDYGARNVVPELQRLPGIGQAQLFGA-ERAMRIWIEPT 123

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           RL     T A ++      N        G        G    V    ++S +        
Sbjct: 124 RLTGYQLTPADVTAAIRAQNAQVASGTIGDLPNVAGQGISATVVVNGQLSSVE------- 176

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
                 +    +                 I            L             +  +
Sbjct: 177 ------QFGDIVLRANRDGSTVRLKDVARIELGGQAYATSARLNGEPAVGIGVQLSSTGN 230

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
                +        L           +   +      S +  + T      LV IV+F+ 
Sbjct: 231 ALQAAKDVHAKMKELEPYFPKGMEWSIPYNSANFVDISITQVRHTLLEAVALVFIVMFLF 290

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           +   ++ ++    + + ++ T A+L  LG ++ + ++ G+VL IG+ VD  I+V E +  
Sbjct: 291 LQNWRYTVIPTIVVPIALLGTFAVLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENVER 350

Query: 441 EN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSI 496
               +  S   +      +    I    +  +   V L FF    G   R F+  M  SI
Sbjct: 351 IMSEEGLSPLEATRKAMRQISGAIVGVTVVLISVFVPLAFFAGSTGNIYRQFSTVMVASI 410

Query: 497 LISMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
             S F A+S+  A+   +                   + +           ++    RA 
Sbjct: 411 GFSAFMALSLTPALCATLLKPVEAGHHHTTKGFFGWFNRSFSRTAKTYESMVSRILRRAA 470

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            + V    +    ++            + +G I + V 
Sbjct: 471 RYLVIYVAILGAVAVIYKRLPTSFLPDEDQGVIIVSVQ 508



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 83/246 (33%), Gaps = 6/246 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                V L  V       Q    S +        +       G+++   + +    K++ 
Sbjct: 187 RDGSTVRLKDVARIELGGQAYATSARLNGEPAVGIGVQLSSTGNALQAAKDVHAKMKELE 246

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
              P     +            I +    ++ +   + I +++  + W + +     + +
Sbjct: 247 PYFPKGMEWSIPYNSANFVDISITQVRHTLLEAVALVFIVMFLFLQNWRYTVIPTIVVPI 306

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  +  ++ +IG  V+D +VV + +     +    +S  +   
Sbjct: 307 ALLGTFAVLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENV--ERIMSEEGLSPLEATR 364

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           K++ +  G  V  ++      +P+A + GS       F+  M   I  +A  ++ +   +
Sbjct: 365 KAMRQISGAIVGVTVVLISVFVPLAFFAGSTGNIYRQFSTVMVASIGFSAFMALSLTPAL 424

Query: 820 LLFIYD 825
              +  
Sbjct: 425 CATLLK 430


>gi|289208527|ref|YP_003460593.1| acriflavin resistance protein [Thioalkalivibrio sp. K90mix]
 gi|288944158|gb|ADC71857.1| acriflavin resistance protein [Thioalkalivibrio sp. K90mix]
          Length = 1024

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 85/611 (13%), Positives = 177/611 (28%), Gaps = 42/611 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +GL       L +  +D  P                          
Sbjct: 10  RPVLTSMVALIVVILGL-----TALTRLPVDLLPDITYPVVT---------VMTSYPNAG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++  + +        +  +  + + ++FA         D +   L  +
Sbjct: 56  AEEVEQLVTRPVEQAAAAITGAQEIRSTSAEGNSNVRVNFAWGTDIRQAVDDLRDRLARI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  +  + L+     ++  I+            AI     I  +   ++        
Sbjct: 116 EGQLPDEADRPLVRQFDTQDSPIMRLGVGS---QLDAIHLRTLIDNRIAPRLERIPGVAA 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  ++  E DP R++ +      +       N    G                 
Sbjct: 173 VDTFGGLEREVRVEVDPDRIQAIDLGLDDLRNRIRDANVITPGGPIMDGRREYRLRTPAE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                EI    +                            +      +      V     
Sbjct: 233 FRSVGEIRDTVV--------------------QRSEDGVTYLHQVAEVRDTHQRVTRRFR 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q      A  +     E        L      I          G    S +  
Sbjct: 273 VNQEEGVQLAVRKLADANTVEVSEAVHAELVRLNRDFPQID-IRAVTDEAGFIRSSITNV 331

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    + L ++VL + +   ++ LVA  +I L VI T  L+   G +L L ++ GI L
Sbjct: 332 GQSILYGSALAVLVLLVFLRNIRYTLVAATAIPLAVISTFGLVYFGGHSLNLMTMGGIAL 391

Query: 423 GIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           G+GL VD+ I+V E I     ++  QS   +   G  R    I  S +T +   + LFF 
Sbjct: 392 GVGLMVDNAIVVIESIARRREEHAEQSAIEAAVTGTGRVAPAIIASTLTTVAIFLPLFFA 451

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
              A + F     +        ++ +   ++  ++    M   D + L+R       +  
Sbjct: 452 QELAGQLFKPLAAVVAFALA-ASLIVALTVVPMLMARAPMPRRDTSALARMERRYQGLLR 510

Query: 541 QFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             +   +  +G+S L  + ++  L            +G +++ V       L  + S + 
Sbjct: 511 GTLAHPWMVIGVSALLMVIALAGLRGVGTEFLPATDEGELRVHVSMEPGTPLDELYSTMA 570

Query: 600 SLQIGDISFQN 610
           SL+        
Sbjct: 571 SLEEVIRDEVP 581



 Score = 86.7 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 86/222 (38%), Gaps = 6/222 (2%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               VR  +      +   V   V++ + +I     I  +     +       + ++G ++
Sbjct: 797  QARVRTLFINLGDRSLGEVAASVREALADIPLPEEIDYSVTGDIEEQEAAFSELLLGTML 856

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + + +   ++     L  + ++ L I    G   +     N+ ++  VL L+G  V
Sbjct: 857  ATLLVYMVMASLYESLRDPLIVMFSIPLAIIGVTGALLVTDTTLNVQSLIGVLLLVGIVV 916

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +++ DRM    +     +   + +  +  E L   + T++   +++ P+A+    GG
Sbjct: 917  NNAILLVDRM--ARRHRDDGMELHEAVVAAAGERLRPILMTTLTTILALSPLAIGMGDGG 974

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                  A  +  G++ +   ++ +   + L  +        +
Sbjct: 975  EAQAPMARVVIGGLLSSTLITLVLIPTLYLLFHRRGKHPQPV 1016



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 69/214 (32%), Gaps = 7/214 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              +    +    L  V    ++ Q     F+    E   L   +    ++V  +  +  
Sbjct: 241 DTVVQRSEDGVTYLHQVAEVRDTHQRVTRRFRVNQEEGVQLAVRKLADANTVEVSEAVHA 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              ++    P   I+        I   +   G   +  SA+A+L+ +       + L A 
Sbjct: 301 ELVRLNRDFPQIDIRAVTDEAGFIRSSITNVGQSILYGSALAVLVLLVFLRNIRYTLVAA 360

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTS 754
           T + L +  T G     G   NL  +  +   +G  V++ +VV + +   R+        
Sbjct: 361 TAIPLAVISTFGLVYFGGHSLNLMTMGGIALGVGLMVDNAIVVIESIARRREEHAE---- 416

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            S  +             + +++      LP+  
Sbjct: 417 QSAIEAAVTGTGRVAPAIIASTLTTVAIFLPLFF 450


>gi|209521356|ref|ZP_03270070.1| acriflavin resistance protein [Burkholderia sp. H160]
 gi|209498215|gb|EDZ98356.1| acriflavin resistance protein [Burkholderia sp. H160]
          Length = 1044

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 70/542 (12%), Positives = 150/542 (27%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I  +GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLVGLVALRFLPLSALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGSSIITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +L+   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPILT-LAITSKTMPLTQVQDLADTRLAQKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGQRPAIRIQANPRALAAYGLNLDDLRTTISNLNVNTPKGNF------DGPTRNYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I         G  
Sbjct: 229 INSNDQLTDADEYKTA--------------VVAYKSGRPVMLTDVATIVSGPENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    +++   L   L+          V          S    
Sbjct: 275 VDNTPAIILNVQRQPGANVIQVVDSIKALLPQLQQSLPAALDVQVVTDRTTTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELAMSVVLVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLFGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +  +   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDTALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPHDSQRFEAKAHRFIDWVIA 514

Query: 540 IQ 541
             
Sbjct: 515 RY 516



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 96/261 (36%), Gaps = 12/261 (4%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           +T   N  +      +  V+A +     ++      +   + +      +    + L  Q
Sbjct: 227 YTINSNDQLTDADEYKTAVVAYKSGRPVMLTDVATIVSGPENTKLGAWVDNTPAIILNVQ 286

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-----VGVIISAIA 679
                   +V++ +K  + ++           V    +  +          + + +  + 
Sbjct: 287 RQPGANVIQVVDSIKALLPQLQQSLPAALDVQVVTDRTTTIRASVRDVQFELAMSVVLVV 346

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           +++Y+++    Y  +    ++ L +  TL    LFG   +  ++ A+    G+ V+D +V
Sbjct: 347 LVMYLFLA-NVYATIIPSLSVPLSLIGTLAVMYLFGFSLDNLSLMALTIATGFVVDDAIV 405

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGS 796
           + + +    +      +  +   K   +     +  +++    ++P+   G   G +   
Sbjct: 406 MIENI---ARYVEEGDTALEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHE 462

Query: 797 FAIPMAFGIVVAASSSIFIAA 817
           FAI +A  IV++A  S+ +  
Sbjct: 463 FAITLAVTIVISAVVSLTLVP 483


>gi|302336586|ref|YP_003801792.1| acriflavin resistance protein [Spirochaeta smaragdinae DSM 11293]
 gi|301633771|gb|ADK79198.1| acriflavin resistance protein [Spirochaeta smaragdinae DSM 11293]
          Length = 1069

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 70/504 (13%), Positives = 154/504 (30%), Gaps = 28/504 (5%)

Query: 28  PQSMLDRFPSAMPKNRISL-GLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
               +D +P   P   +   G D  G           + +   +    +   S +     
Sbjct: 30  SDLAIDLYPEIEPPVLVVFTGYDGAG----------PEEIEKRITRTLEGSLSNVSNIES 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  +  + I + F         A+ V   L+ V   L  +    ++       I I+
Sbjct: 80  ITSTSSEGSSMIMVEFTWGTDMAEAANSVRDNLEFVKGALPDEADSPMIFKFDPSMIPIM 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               + ++      + + ++      +I   E       S      +  E    RL    
Sbjct: 140 GLTLSGNRTPEELRQIAEDV---VQPKIEQIEGVALTSVSGGRERIIRVEIPQDRLEAYD 196

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T  ++S      N            +          +   +I    ++          +
Sbjct: 197 LTLTQISSMLQGQNVQVTAGNIDEGNINYLVTTSGEYDSIDQIKNTVIS--------YKN 248

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           + +   S D    R        ++            +      Q I   ++  +   T +
Sbjct: 249 EGMPGTSGDGSTQRTVRLRDIADVYDGYKDADSLVYINGEPGIQIIIQKQSGTNSVQTAD 308

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   +                      S +    +    A L +IVLF+ +   K 
Sbjct: 309 NIRNRLERINKQVPEGITVTEIFNTTDIIKSSLNQVSSSAITGALLAIIVLFVFLRSLKS 368

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
             +   +I +++I+TL L+   G TL + ++AG+ LG+G+ VD++I++ E I     K  
Sbjct: 369 TFIIGLTIPVSLIVTLMLMYFFGLTLNIMTLAGLALGVGMLVDNSIVILENIYRYREKGA 428

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV------RGFAITMGLSILISM 500
            +  S  +G     + I  S +T +     +  F              A T+ +S+  S+
Sbjct: 429 KLTASAILGSQEMINAIVASTLTTICVFAPVVLFKSQLDVVGELLASLAFTVVISLSASL 488

Query: 501 FTAISIVRAMMIFIIRYKKMKSID 524
             A++++  +    +     +   
Sbjct: 489 VVAVTLIPVLSSHYLPLTSRRQRP 512



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 57/550 (10%), Positives = 164/550 (29%), Gaps = 46/550 (8%)

Query: 10   LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
            + +++  + + ++    +P++  +  PS M +++++LG++L  G+ L       +     
Sbjct: 547  IITIVVVLAVFLSSLTLIPKTGFEFMPS-MQEDQVNLGVELPVGTKL-------EITETV 598

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQ------------NKITLSFADSRFKENIADKVTL 117
            ++   D +RS +K     +  + +                I +     + + + +D V  
Sbjct: 599  IKQMEDIVRSEVKGYDDIITEVGEASFFGLGGSAIGYKGSIRIMLPPYKERIDSSDDVKQ 658

Query: 118  FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             L+   +                   +  +      + ++ A + + +I     +   ++
Sbjct: 659  KLRKHFNDFPSAVFSFDSSQGASFGGTTPIDILIKTEDLTKAKDIAEKIRDILQNMPEVT 718

Query: 178  ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
            E  I        L Q+    D  ++  L      +        +      F         
Sbjct: 719  EPQIDLKDG---LPQVEIVMDRDKMYSLGLNVYSVGQEIQANLDGITASQFREGGNEYDI 775

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                  ED+ +I                    ++  F    A +   +      +     
Sbjct: 776  VMFLADEDRNQI------------------LDLNKVFVNNQAGQRIPLASFARYQKGTGP 817

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +         +           + N   + A  L          + +    +       G
Sbjct: 818  ITINRENQTRVVHVTAGTVPGTALNEVADRAQQLINQEIPADEDVLIEFSGDYEDLQKYG 877

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
               +      +   LV  V+           +  F+I L++I  + +  L G    + + 
Sbjct: 878  MRFVA--IILVSVFLVFGVMASQFESFVDPFIILFAIPLSMIGVILIYFLTGQIFNILTA 935

Query: 418  AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             G+V+  G+ V++ I++ +      ++  ++  +           I  + +T ++  V +
Sbjct: 936  VGLVMLAGIIVNNGIVLVDYTNLLRKRGMNIHDACVEAGRNRLRPILMTTLTTVLGLVPM 995

Query: 478  FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             FF   G   V+    ++   + +     + ++  +   + R  + +             
Sbjct: 996  AFFPGEGSELVQPIGKSVVGGLSVGSLFTLLLIPVIYAIVNRVGERRQEKREARKLARQK 1055

Query: 535  PDCIAIQFMR 544
                     +
Sbjct: 1056 NRLEIEAQCK 1065



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 88/264 (33%), Gaps = 10/264 (3%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
            + + +    G    G  Q  V      D+     + +SL   +            +++ 
Sbjct: 243 VISYKNEGMPGTSGDGSTQRTVRLRDIADVYDGYKDADSLVYINGEP-----GIQIIIQK 297

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
           Q           +   +++   ++    T+         I   L +     +  + +A++
Sbjct: 298 QSGTNSVQTADNIRNRLERINKQVPEGITVTEIFNTTDIIKSSLNQVSSSAITGALLAII 357

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +                T+ + +  TL     FG+  N+  +A +   +G  V++ +V+ 
Sbjct: 358 VLFVFLRSLKSTFIIGLTIPVSLIVTLMLMYFFGLTLNIMTLAGLALGVGMLVDNSIVIL 417

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV--LPMAVWGGSVIGSFAI 799
           + +    +                 E +   V +++        + +      V+G    
Sbjct: 418 ENI---YRYREKGAKLTASAILGSQEMINAIVASTLTTICVFAPVVLFKSQLDVVGELLA 474

Query: 800 PMAFGIVVAASSSIFIAAPILLFI 823
            +AF +V++ S+S+ +A  ++  +
Sbjct: 475 SLAFTVVISLSASLVVAVTLIPVL 498



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 84/233 (36%), Gaps = 11/233 (4%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                    +  +V +        A   V +  ++ I + +P       E  G     +  
Sbjct: 817  PITINRENQTRVVHVTAGTVPGTALNEVADRAQQLINQEIPADEDVLIEFSGDYEDLQKY 876

Query: 667  RKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                V +I +S   +   +  +F+ +      +  + L +   +  + L G  FN+    
Sbjct: 877  GMRFVAIILVSVFLVFGVMASQFESFVDPFIILFAIPLSMIGVILIYFLTGQIFNILTAV 936

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ L G  VN+ +V+ D       L    ++  D   ++    L   + T++   + ++
Sbjct: 937  GLVMLAGIIVNNGIVLVD---YTNLLRKRGMNIHDACVEAGRNRLRPILMTTLTTVLGLV 993

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA---PILLFIYDWRAKNA 831
            PMA +   G  ++      +  G+ V +  ++ +      I+  + + R +  
Sbjct: 994  PMAFFPGEGSELVQPIGKSVVGGLSVGSLFTLLLIPVIYAIVNRVGERRQEKR 1046


>gi|187250543|ref|YP_001875025.1| hydrophobe/amphiphile Efflux-1 (HAE1) family protein
           [Elusimicrobium minutum Pei191]
 gi|186970703|gb|ACC97688.1| The hydrophobe/amphiphile Efflux-1 (HAE1) Family [Elusimicrobium
           minutum Pei191]
          Length = 1073

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 63/664 (9%), Positives = 183/664 (27%), Gaps = 45/664 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  +G++           +D +P+                   VL   
Sbjct: 26  KRPVTTAMLSIALLVLGVI-----GFKSMGIDMYPNVELPYV---------AIQTVLPGA 71

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E  + +              +   ++F   +  +  A +V   +  
Sbjct: 72  SPEEVETSITKIIEESVNTVSGIDEINSYSLDGLSITVIAFELEKDGDVAAQEVRDKVNQ 131

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L    +  ++       + ++    + +      IE +    +   + I       
Sbjct: 132 IQANLPEGTEAPVISKFDLSSLPVLTIAISGE---RDVIELTEMSKKLVKESIESISGVG 188

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++  E +P +L  L    +++       N    G                
Sbjct: 189 SVNIVGGRKREIHVEVNPFKLYSLGIPISEVKGALQEQNVEIPGGRVEQPSKEFDLRILG 248

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +   +++                         R         +           
Sbjct: 249 RIPTVADFLNVYIGT--------------------RNGRPIKISDVGTVIDSGEYERQST 288

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            ++  +    IE        ++                G    S   
Sbjct: 289 WLNERRTISLEVQKQSGTNTLAVIEGIKARIEEIKPILPEDFQITFLMDQSGNIRESFYS 348

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   L   V+F+ +   K  +++  +I +++I +   +   G TL   ++ G+ 
Sbjct: 349 VIEHLILGGLLAAFVVFVFMGSLKSTIISSIAIPISIIGSFFFMWQFGFTLNNMTLLGLT 408

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + +G+ +D  I++ E I        +    +   G       I  +  + ++  + L F 
Sbjct: 409 VAVGIVIDDAIVMLENIYRHKEEYGKGAVKAALDGSKEITGAIIATTASIVVIFLPLAFM 468

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G  VR + IT+ ++I +S   A+++   +   ++   + KS     +++       
Sbjct: 469 SGIVGRFVRSYGITVAVAITLSGIVALTLTPMLCAKLLTGDEKKSKIEVYVTKINGWLVA 528

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             +  +         +    +    LL    +   +  +  I++   +      ++V + 
Sbjct: 529 KYLPMLE----WALRNRKTMVLISVLLMVSTIPMLVGLEPFIKIVKPSFSVNTQNIVVNT 584

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +      D   Q+  G+    ++         +      +           +   +  + 
Sbjct: 585 IFKGVGKDFIPQDDSGKIRATIKAPVGVSYEDSMAIFNTLADDLRQLPYIKNMFVSVGVP 644

Query: 658 GPKI 661
              +
Sbjct: 645 ADSM 648



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 84/276 (30%), Gaps = 12/276 (4%)

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                   LN  I  + G  + +     V  S       +      +      +++    
Sbjct: 249 RIPTVADFLNVYIGTRNGRPIKISDVGTVIDSGEYERQSTWLNERRTISLEVQKQSGTNT 308

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           L    G       +  ++ +       +    N       +   LI  G++   +  + M
Sbjct: 309 LAVIEGIKARIEEIKPILPEDFQITFLMDQSGNIRESFYSVIEHLILGGLLAAFVVFVFM 368

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
                        + +   + + I  +  F   FG   N   +  +   +G  ++D +V+
Sbjct: 369 G-------SLKSTIISSIAIPISIIGSFFFMWQFGFTLNNMTLLGLTVAVGIVIDDAIVM 421

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSF 797
            + +                      E  G  + T+ +  +  LP+A   G V   + S+
Sbjct: 422 LENI--YRHKEEYGKGAVKAALDGSKEITGAIIATTASIVVIFLPLAFMSGIVGRFVRSY 479

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            I +A  I ++   ++ +   +   +     K ++I
Sbjct: 480 GITVAVAITLSGIVALTLTPMLCAKLLTGDEKKSKI 515



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 85/238 (35%), Gaps = 10/238 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +L  ++ G    Q     +   V +   P   +      +++++    + P        
Sbjct: 827  DSLAKIEEGFGPTQIDRYNRQRQVTVSANPTGGMDIGTGSKVMEEVFRSLNPSEEYNGRI 886

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            I   K   +++   I+  I++ +   + +  + + +   +  + +L L +   L    + 
Sbjct: 887  IGMGKEMGKMMSSFIMAFILAFLFKYMILASQMESYTHPVAVLVSLPLTLPFALISLIVT 946

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ ++  +  LIG    + ++  D +          +     I +     L   + 
Sbjct: 947  GQTLNIFSLLGLFMLIGVVSKNSILQIDYINTLRSEGLHRLD---AILEGNKVRLRPILM 1003

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA---PILLFIYDW 826
            T++A  + V+ M      G  +  S AI +  G  ++   ++ +      +L  +  W
Sbjct: 1004 TTIALVMGVVSMVFGTGSGAVLRRSLAIVVIGGQTLSLLVTLLMTPVTYTLLDDLGRW 1061


>gi|284006853|emb|CBA72119.1| multidrug efflux system subunit MdtB [Arsenophonus nasoniae]
          Length = 1020

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 57/542 (10%), Positives = 141/542 (26%), Gaps = 38/542 (7%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
              I   G++           +   P                    +      D +   +
Sbjct: 1   MVAILLAGII-----GYRFLPVSALPQVDYPTIQ---------VVTLYPGANPDVMTSAI 46

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               +     +              + ITL+F  S   +    +V   +   ++ L  D 
Sbjct: 47  TAPLERQLGQMSGLKQMFSQSAGGSSVITLTFQLSLALDIAEQEVQAAINAASNLLPKDL 106

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
               + +        +L+   +        +    +  +   +I   +       +    
Sbjct: 107 PYPPVYSKVNPADPPILT-LAVTTNALPMTQLQDMVETRVAQKISQVDGVGLVTLAGGQR 165

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
             +  + +P  +         +       N +             +      ++   +  
Sbjct: 166 PAVRIKLNPQAVAAQQLDNETIRLAINNANVNSAKGSLDGPARAITLSANDQMKSLAD-- 223

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                                +                 I +       G          
Sbjct: 224 ------------------YRSLIIAYKQGGAIRLGDIATISQAAENTQLGAWANQKPAIV 265

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                +   +   T +    +   L           +          S    +    +  
Sbjct: 266 INVQRQPGANVIKTTDNIRKILPELVKNLPKAVKVNILTDRTTTIRASVKDVQFELVMAI 325

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            LV++V+++ +  G   L+   ++ L+++ T A++   G ++   ++  + +  G  VD 
Sbjct: 326 ALVVMVIYLFLRNGTATLIPSIAVPLSLVGTFAVMYFCGFSINNLTLMALTVATGFVVDD 385

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRG 487
            I+V E I     K      +   G      TI     + +   + LFF     G   R 
Sbjct: 386 AIVVIENISRYLEKGDKPLTAALKGAGEIGFTIISLTFSLIAVLIPLFFMSDIVGRLFRE 445

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
           FAIT+ ++ILIS   ++++   M   +++ +     +        +    I I     + 
Sbjct: 446 FAITLAVAILISAVVSLTLTPMMCARLLKAEAKIKHNRFEKGCEIVFDKMIVIYGAWLKR 505

Query: 548 WG 549
             
Sbjct: 506 IL 507



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 7/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      L     + L +  T       G   N   + A+    
Sbjct: 321 LVMAIALVVMVIYLFLRNG-TATLIPSIAVPLSLVGTFAVMYFCGFSINNLTLMALTVAT 379

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+    
Sbjct: 380 GFVVDDAIVVIENI---SRYLEKGDKPLTAALKGAGEIGFTIISLTFSLIAVLIPLFFMS 436

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G +   FAI +A  I+++A  S+ +   +   +    AK  
Sbjct: 437 DIVGRLFREFAITLAVAILISAVVSLTLTPMMCARLLKAEAKIK 480



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 87/247 (35%), Gaps = 6/247 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +      +  V  + L  ++            +       +      +    ++ +K+  
Sbjct: 754 IRLRSNQNTMVPLNTLAKVEQHYGPLSINHLAQFPSATFSFNVAKGSSLEEAVKAIKQIE 813

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
            +I     I            + +   +  ++ + IAM I + I ++ +   +  ++TL 
Sbjct: 814 NQIKLPHEIVTQFQGATLAFEKALANTLWLILAAIIAMYIVLGILYESFIHPITILSTLP 873

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                 L    + G E ++ AV  ++ LIG    + +++ D            +S ++ I
Sbjct: 874 TAGVGALLALMMAGYELDIIAVIGIILLIGIVKKNAIMMID--FALAAEREQGLSPQEAI 931

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            ++        + T+MAA +  LP+ +    G  +       M  G++++   ++F    
Sbjct: 932 YQACLLRFRPILMTTMAALLGALPLMLSSGVGAELRRPLGTGMVGGLILSQILTLFTTPV 991

Query: 819 ILLFIYD 825
           I L    
Sbjct: 992 IYLLFDR 998


>gi|212212736|ref|YP_002303672.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuG_Q212]
 gi|212011146|gb|ACJ18527.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuG_Q212]
          Length = 1012

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 80/615 (13%), Positives = 171/615 (27%), Gaps = 42/615 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L  ++  +G++        +  L  FP                      +  
Sbjct: 9   RQPVLAIVLSLILVVLGVVA-----FQRLELRFFPKLELPILT---------VATTYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S +        +     + +T+ F      E  A  V   +  
Sbjct: 55  SAQLMESQVTTQIENALSGVDHIASISSTSYPGSSYVTVLFQLGGNFEEEASAVRDKVFA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  +     +   T+    +             + +    + R     +       
Sbjct: 115 IRDQLPPNANPPTITVGTKGNPVL---GIGFIDPQKSSADIRDYVERAVQPALRQLSGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    + S++     T   +       N               S  +  
Sbjct: 172 EVDILGASDYAMRIWLNASKMVAHQVTVTDVKNALTANNIYFPAGSIQEPKRNYSIVSHT 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D                          I  +  G                ++     
Sbjct: 232 QLKDATA-------------------FGNIIIKNNDGGTVRLNDIGHAELGYRSLYEAPM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      + +     + +            A ++    P     V          S   
Sbjct: 273 RINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASVNYDASTFLKSSIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV+ V+F+ +   +   +   +I +++I   A + L G T+   S+ GIV
Sbjct: 333 TFYAMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKLFGFTINTMSLLGIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I     +  + F +   G       I    +T +     + F  
Sbjct: 393 LAIGLVVDDAIVMLENIHRHIEEGMTPFQAAIKGSREISFAIIAMALTLVAVYAPVGFVQ 452

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA T+  +++IS F A+++   M   I+  +   S     + R F      
Sbjct: 453 GFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKDSRLTIIIDRAFSQLTGF 512

Query: 539 AIQFMRA---RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +F++    +        L       +LF    +  I  +    + V    P   S+  
Sbjct: 513 YQRFLKFALNKRRLFIAGSLAIAGVGYVLFISLPSELIPKEDIGLIQVSVTSPSGASLNY 572

Query: 596 SNLESLQIGDISFQN 610
           +N  + Q+  I  QN
Sbjct: 573 TNQYAEQVEKIIQQN 587



 Score = 85.5 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 82/243 (33%), Gaps = 7/243 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + L    + +   +        L+    Q  + V     ++     I + +P     + 
Sbjct: 259 HAELGYRSLYEAPMRINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASV 318

Query: 655 EIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
                   +  I +    +     + + +          A   I T+ + +     F  L
Sbjct: 319 NYDASTFLKSSIEETFYAMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG   N  ++  ++  IG  V+D +V+ + +    +     ++      K   E     +
Sbjct: 379 FGFTINTMSLLGIVLAIGLVVDDAIVMLENIH---RHIEEGMTPFQAAIKGSREISFAII 435

Query: 774 YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++       P+     +   +   FA  +A  +V++A  ++ ++  +   I   R K+
Sbjct: 436 AMALTLVAVYAPVGFVQGFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKD 495

Query: 831 ARI 833
           +R+
Sbjct: 496 SRL 498



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 88/274 (32%), Gaps = 11/274 (4%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            +         DF    +L V +N   D +   S   S  I            +F      
Sbjct: 743  IVQMDKQDLTDFNALKKLYVHSNNKTDANKGNSIPVSSLIDLTPTVGQGSFTHFNRFRSG 802

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLI 682
                 +A       V   I   VP     +        + + ++     + I  +  + I
Sbjct: 803  TISARLAPGYSESQVIDYIKAHVPFVMTSDVHYAFSGKAAQFLQSSKSMIGIILMSLIFI 862

Query: 683  YIWIRFKWYFALGA-ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVV 739
            Y+ +  ++   L   +  L + +    G  +L   G   ++ +   ++TLIG      ++
Sbjct: 863  YLVLSAQFGSFLDPFVILLAVPLCIVGGLLSLKLTGGALSIYSQIGLVTLIGMISKHGIL 922

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GS 796
            +   +     L    ++ ++ I +     L   + T++A     LP+A+  G   I    
Sbjct: 923  ITQFIND---LRKQGMAMQEAILRGAMIRLRPVLMTTLAMVFGALPLALASGPGSIGRHQ 979

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                +  G++     S+ I  PI         K 
Sbjct: 980  IGWVIVGGLLFGTFFSL-IVVPIAYSYLGRFKKR 1012


>gi|196229907|ref|ZP_03128771.1| acriflavin resistance protein [Chthoniobacter flavus Ellin428]
 gi|196226233|gb|EDY20739.1| acriflavin resistance protein [Chthoniobacter flavus Ellin428]
          Length = 1040

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 62/574 (10%), Positives = 150/574 (26%), Gaps = 34/574 (5%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +   GL            +   P                  +  L   +   V   L  
Sbjct: 15  FLLAGGLFFLGIVAYHFLPVAPLPHVDFPMI---------SVNASLPGADPQTVASSLAA 65

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             +     +        +       I++ F   R  +  A  V   +    + L ++   
Sbjct: 66  PLERRLGEISGITEMTSTSSLGATGISIQFDLDRAVDGAARDVQRAIDEAAADLPINIPT 125

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
                      + +L    +        +           Q+   +   Q + S      
Sbjct: 126 LPSWRKQNPADAPILI-LAMTSETREPTQVFQYADEIVGQQLAQLKGVGQVVISGAEKSA 184

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           +  + +P+ L     +   +  +                           +         
Sbjct: 185 VRVQVNPAALASSQISLEDVRNYL--------------------QQVNVDMPKGSVDGDK 224

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                 +N          ++             +  N+   +     G           I
Sbjct: 225 ASYAIYSNDQLLEAGEYRNLILATKNGTPIKLSSVANVVNGVENSRLGGWAGTKPAVLVI 284

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              +   +   T +              P     V          S    + +      L
Sbjct: 285 VFKQPDANVIATTDLVKAALPTTEKWLPPSVHLDVISDRTITIRASVEEVQFSLMASIAL 344

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           V++V+F+ +       +A  ++ L++  T  ++ LL  +L   S+  + + +G  VD  I
Sbjct: 345 VVMVIFLFLRRFWPTFIASVTVPLSLAGTFGVMYLLHYSLDNISLMAVTISVGFVVDDAI 404

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFA 489
           +V E +     + +    +   G  +   TI   +++ +     L F G   G     FA
Sbjct: 405 VVIENVFRFVEEGEKPMEAALKGARQIGFTIISISLSLIAVFGPLLFMGGLIGRLFHEFA 464

Query: 490 ITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
           +T+  +I++S   ++++   M   F+                     + +   +  +  W
Sbjct: 465 VTLSAAIVVSGVISLTLTPMMCSRFLKAEAAHPKKMNFIQRWSEAGLNWMVSHYESSLKW 524

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +   +   + ++  +      YG+  KG     
Sbjct: 525 VLRHQLPMLLITLMTIVMTIWLYGVVPKGFFPQQ 558



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 61/146 (41%), Gaps = 7/146 (4%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I+ + M+I++++R  W     A  T+ L +  T G   L     +  ++ AV   +G+ V
Sbjct: 342 IALVVMVIFLFLRRFWP-TFIASVTVPLSLAGTFGVMYLLHYSLDNISLMAVTISVGFVV 400

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +VV + +    +         +   K   +     +  S++      P+   GG + 
Sbjct: 401 DDAIVVIENV---FRFVEEGEKPMEAALKGARQIGFTIISISLSLIAVFGPLLFMGGLIG 457

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAA 817
                FA+ ++  IVV+   S+ +  
Sbjct: 458 RLFHEFAVTLSAAIVVSGVISLTLTP 483



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 86/199 (43%), Gaps = 6/199 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
            +  E+V++   E+   S+I  +     ++ ++ +    + ++ + I + I + + ++   
Sbjct: 824  QATEIVEQTKHELNMPSSINGSFQGTAQVFQQSLSSLPILILAALITVYIVLGMLYESLI 883

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L    LF  E +L +  A++ L+G    + +++ D   +     
Sbjct: 884  HPITILSTLPSAGLGALLALMLFHSELSLVSFIAIILLMGIVKKNAIMMIDFALE--AER 941

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
              ++   + I K+        + T+MAA +  +P+A+    G  +     I +  G++V+
Sbjct: 942  HQNMGPEEAIFKACIIRFRPIMMTTMAALLGAVPLAIGMGVGAELRQPLGIAVVGGLIVS 1001

Query: 809  ASSSIFIAAPILLFIYDWR 827
               +++    I LF    R
Sbjct: 1002 QILTLYTTPVIYLFWEHLR 1020


>gi|295098196|emb|CBK87286.1| Cation/multidrug efflux pump [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 593

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 39/458 (8%), Positives = 111/458 (24%), Gaps = 39/458 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                 +L   I   G++           +   P                   +V     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPT-----------IQVVTLYPG 62

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D V   +    +     +              + +TL F  +   +    +V   + 
Sbjct: 63  ASPDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLSLDVAEQEVQAAIN 122

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  D     + +        +++   +        +    +  +   +I      
Sbjct: 123 AATNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAMPMTQVEDMVETRVAQKISQVTGV 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      +  + +   +  L  T+  +       N +                  
Sbjct: 182 GLVTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAISSANVNSAKGSLDGPT-------- 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                 V +S      +   +          +                 + +       G
Sbjct: 234 ----RAVTLSANDQMQSADEYRQ--------LIIAYQNGAPIRLGDVATVEQGAENSWLG 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +   T ++   +   L           V          S +
Sbjct: 282 AWANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLVESLPKSVSVKVLSDRTTNIRASVT 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  +
Sbjct: 342 DTQFELMLAIALVVMIIYLFLRNVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMAL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR 458
            +  G  VD  I+V E I     K +    +   G   
Sbjct: 402 TIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGE 439



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 50/147 (34%), Gaps = 6/147 (4%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI- 670
              K   + +  Q           + ++  + ++V       +  V    +  +      
Sbjct: 283 WANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLVESLPKSVSVKVLSDRTTNIRASVTD 342

Query: 671 ----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               + + I+ + M+IY+++R      +     + L +  T           N   + A+
Sbjct: 343 TQFELMLAIALVVMIIYLFLR-NVPATIIPAVAVPLSLVGTFAVMVFLDFSINNLTLMAL 401

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               G+ V+D +VV + + + ++    
Sbjct: 402 TIATGFVVDDAIVVIENISRYIEKGEK 428


>gi|124025659|ref|YP_001014775.1| preprotein translocase subunit SecD [Prochlorococcus marinus str.
           NATL1A]
 gi|123960727|gb|ABM75510.1| preprotein translocase subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 496

 Score =  147 bits (370), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 122/537 (22%), Positives = 220/537 (40%), Gaps = 69/537 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R N W    +  +    +                          LGLDLRGGS L LEV 
Sbjct: 3   RKNYW----FLFVILFAIFSIF--------------ICTNIPFQLGLDLRGGSQLTLEVQ 44

Query: 62  E----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116
                       ++     L   +   G+    ++ +  N++ L     +     A  + 
Sbjct: 45  PTKEITKITPNEIEGVKAVLDKRVNGLGVSDSQLQTVGTNQLLLELPGEQDPSGAAKVLG 104

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                                 T++     +    +++  + A       I   I+Q+  
Sbjct: 105 ETALLEFRIQKNGTAAQYRDLQTQRNSVESIINL-LEENNNSAQLLKEININNDINQLFE 163

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
             +         +   +   +  + +  L   T+                          
Sbjct: 164 KYNIQSDQILDVVEFNILRNKISTEIAGLFEPTS-------------------------- 197

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                       ++G +L  A    D  T+   V +SF+  G   F ++T+   G    +
Sbjct: 198 ------------LTGQYLTNAGRRQDQNTNNWEVTLSFNNEGGELFADLTKSIAGTSRLL 245

Query: 297 VLDGRVLTAPVIN-------QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
            +    ++    +         I  G A ISGNFT + A  L   LR G+LP+ + I++ 
Sbjct: 246 GIVIDGISYSEASVGKQFETAGITGGAATISGNFTADDARNLEVQLRGGALPLPIEIIQI 305

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           R +G  LG+ +I     A + GL  + +FMI +Y   G VA  ++    + TL++ +LL 
Sbjct: 306 RTIGPSLGTQNIRLSLFAALTGLFFVGIFMIFIYKLAGFVAVLALSCYSLFTLSIYALLP 365

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            TLTLP IAG +L IG+AVD+N+L+ ER++EE     ++  S+D  F  A+S+I D ++T
Sbjct: 366 VTLTLPGIAGFILSIGMAVDANVLIFERLKEELLNGNTLIRSIDASFKNAFSSIIDGHLT 425

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            LI+ + LF+ G G V+GFA T+G+ +++S+FTA++  +A++ F++ ++ ++     
Sbjct: 426 TLISCITLFYLGTGFVKGFAATLGIGVMLSLFTALTCTKAILKFLMSFQGLRKSSNF 482



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 31/176 (17%), Positives = 72/176 (40%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + IR  +   +     + I++   +K      A+  L      TL  +AL  
Sbjct: 307 TIGPSLGTQNIRLSLFAALTGLFFVGIFMIFIYKL-AGFVAVLALSCYSLFTLSIYALLP 365

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A  +  IG +V+  V++++R+++ +       +    ID S        +  
Sbjct: 366 VTLTLPGIAGFILSIGMAVDANVLIFERLKEELL---NGNTLIRSIDASFKNAFSSIIDG 422

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   IS + +   G   +  FA  +  G++++  +++     IL F+  ++    
Sbjct: 423 HLTTLISCITLFYLGTGFVKGFAATLGIGVMLSLFTALTCTKAILKFLMSFQGLRK 478


>gi|168703915|ref|ZP_02736192.1| hypothetical protein GobsU_30560 [Gemmata obscuriglobus UQM 2246]
          Length = 1182

 Score =  147 bits (369), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 59/524 (11%), Positives = 153/524 (29%), Gaps = 30/524 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  ++  +G+L      +    + +FP   P               + + +  
Sbjct: 8   RPALAIVISIILLFLGVL-----GIKTLPVAQFPDIAPPT-------------VEVAIAY 49

Query: 63  DDFVNG-FLQMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +      L   +        I   +    +  I + F            V  
Sbjct: 50  PGASANVLVDSVLIPLEQSINGVQGMRYIASSATSAGEAVIRIYFEPGTDPNINVVNVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  + ++L    ++  ++ +      ++      +   +   +         + ++   
Sbjct: 110 RVNIMMNRLPPLVQREGILVSQVVPSMLMYVNIYSEDPNADQKDLFNFANVFVMPRLKRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +    +P  +R+    T ++       +        G      S 
Sbjct: 170 QGMGIPRNLGNRAFAMRIWLNPDSMRRYNIATDEVMKALAEQSVIGSPGRLGQATGITSQ 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN--IGKPLA 295
             +Y++      +           +    + +       +   +  +  + +  +     
Sbjct: 230 SKEYVLTYVGRYNKKEQYENIILRETAEGEILRLKDICGVKEIKDGKEVQKSPGVELGSE 289

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGA 354
                  +        I       +    IE     L  + +    P     +       
Sbjct: 290 FFDIYSDINGRPAASIILKQSPGSNAAEVIEEIKAELGRIEKESFPPGMKYELSYDVSRF 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S      T      LV +V++M +   +  L+   ++ +++I T  +L L+G ++ L
Sbjct: 350 LEASTEKVLHTLIEAFILVSLVVYMFLGDIRSTLIPILAVPVSLIGTFFVLKLMGLSINL 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++  +VL IG+ VD  I+V E +  +  +   S + +           I    +     
Sbjct: 410 ITLFAMVLAIGVVVDDAIVVVEAVHAKMAEKHLSPYRATMEVLHEISGAIIAITLVMTSV 469

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            V + F     G   R F ITM  SI++S   A+++   +   I
Sbjct: 470 FVPVTFVPGPVGQFYRQFGITMSTSIVLSGVVALTLTPVLCAMI 513



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 78/227 (34%), Gaps = 6/227 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L S      S  N     + +++       +     +   + +   E  P         
Sbjct: 285 ELGSEFFDIYSDINGRPAASIILKQSPGSNAAEVIEEIKAELGRIEKESFPPGMKYELSY 344

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFG 715
              +       K +  +I + I + + +          L  I  + + +  T     L G
Sbjct: 345 DVSRFLEASTEKVLHTLIEAFILVSLVVYMFLGDIRSTLIPILAVPVSLIGTFFVLKLMG 404

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +  NL  + A++  IG  V+D +VV + +    K+    +S      + ++E  G  +  
Sbjct: 405 LSINLITLFAMVLAIGVVVDDAIVVVEAVH--AKMAEKHLSPYRATMEVLHEISGAIIAI 462

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++      +P+    G V      F I M+  IV++   ++ +   +
Sbjct: 463 TLVMTSVFVPVTFVPGPVGQFYRQFGITMSTSIVLSGVVALTLTPVL 509



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 47/140 (33%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  I +L + I  +       G+  ++ A   ++ L+G    + +++ +     +
Sbjct: 983  SFLLPLAVILSLPIGIFGSFFCLQALGLSNDVYAQIGLIMLVGLLGKNAILIVEFA---V 1039

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVI--GSFAIPMAFGI 805
            +      S  +   +           TS A    +LP+ V  G   I   +     A G+
Sbjct: 1040 QRRQEGQSLIEAAVEGGKLRFRPIQMTSFAFIAGLLPLVVATGAGAIGNRTIGTTAAGGM 1099

Query: 806  VVAASSSIFIAAPILLFIYD 825
            +V     I +   +      
Sbjct: 1100 LVGTVIGILVIPGLYYLFGR 1119


>gi|121602505|ref|YP_988627.1| RND efflux transporter [Bartonella bacilliformis KC583]
 gi|120614682|gb|ABM45283.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bartonella bacilliformis KC583]
          Length = 1044

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 66/571 (11%), Positives = 153/571 (26%), Gaps = 46/571 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L +MI   G      +      +   P                         
Sbjct: 25  RRPVFTFVLNAMIMIAG-----FSAWMGVDVRELPDIDIPVTT---------VMTNFAGA 70

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  S +        +    ++++ + F         A  +   L  
Sbjct: 71  SAETIDREITKIVEDAVSRVSGVKTISSTSSFGRSRVEIQFNVGVDLNVAASDIRDALSR 130

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D    L++       +++        +     + +  +  Q +D +   E   
Sbjct: 131 VAYSLPKDADSPLIIKADSNAAAMMYLVVTSPTMNID--DLTTIVNDQIVDVLSAVEGVA 188

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D  +L     + A +S                            
Sbjct: 189 DVEVDSARKKIFQIDIDQVKLANYGLSVADISSALSDMMVDVPVGSLRNAKQALIVRATA 248

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +   + L                                   +     +     
Sbjct: 249 HLATPEDFERVLLKPH------------------------VLIGDVARVTLSPDIETVIL 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            KAQ +     +   I    L+    P     +   +      +   
Sbjct: 285 RVNGEEGIGLGIVRKAQSNTLNISKDVRITLDRLKMIIPPSVQISIISDDSIFIKSALHE 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I    V+ V+F+ +   +  L+   SI + +I T+A + L G +L + +  G+V
Sbjct: 345 VEIALVIAVLSVIFVIFIFLRDIRITLIPALSIPVALIGTIAAIYLAGFSLNILTFLGLV 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     K      +  +G    +  +  + +T +   V + F  
Sbjct: 405 LATGLVVDDAIVVLENIVRWRNKGHGSRSAAVLGTREVFFAVVATTLTLVAVFVPISFLP 464

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLIP 535
           G      R F   + +S+L+S   A+++   +          +  + +    +       
Sbjct: 465 GQVGGLFREFGFVLAISVLLSSVVALTLCPMLAARFLKEHVEENKEDVRRFIILDKLGAF 524

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFT 566
                 +   +  G   +++        L  
Sbjct: 525 FSRNYAYYLHKCLGRPWTVILISFVFFGLCI 555



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 72/244 (29%), Gaps = 6/244 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  L       I   N +      +  + Q         V   + +    I P   I
Sbjct: 269 DVARVTLSPDIETVILRVNGEEGIGLGIVRKAQSNTLNISKDVRITLDRLKMIIPPSVQI 328

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    I   L    I  VI     + +           L    ++ + +  T+   
Sbjct: 329 SIISDDSIFIKSALHEVEIALVIAVLSVIFVIFIFLRDIRITLIPALSIPVALIGTIAAI 388

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   N+     ++   G  V+D +VV + +   ++        R        E    
Sbjct: 389 YLAGFSLNILTFLGLVLATGLVVDDAIVVLENI---VRWRNKGHGSRSAAVLGTREVFFA 445

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V T++      +P++   G V      F   +A  +++++  ++ +   +         
Sbjct: 446 VVATTLTLVAVFVPISFLPGQVGGLFREFGFVLAISVLLSSVVALTLCPMLAARFLKEHV 505

Query: 829 KNAR 832
           +  +
Sbjct: 506 EENK 509



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 57/145 (39%), Gaps = 6/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ L +   +    L G+  N+ +   ++ LIG    + +++ +      
Sbjct: 888  SFVSGFIIMATVPLGLGCAVIAMLLSGVSLNIYSQIGLILLIGVMAKNGILIVEFA---D 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +L     S R+ ++++ N  L     T + A +  +P+ +    G     +    +  G+
Sbjct: 945  QLRDQGRSVREAVEEAANVRLRPVCMTMICAILGGIPLILAKGAGAEARIALGWVIVGGL 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
             +A   ++++   + L +  +    
Sbjct: 1005 GLATIFTLYVTPVVYLLLGRFIRPK 1029


>gi|296127131|ref|YP_003634383.1| acriflavin resistance protein [Brachyspira murdochii DSM 12563]
 gi|296018947|gb|ADG72184.1| acriflavin resistance protein [Brachyspira murdochii DSM 12563]
          Length = 1044

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 77/664 (11%), Positives = 197/664 (29%), Gaps = 45/664 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++   I  +GL+      +      + P                  +   +  
Sbjct: 10  KRPVTILMVIVSILILGLISLSRLSIDFMPNMQIPYIS--------------IYTRYKNS 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +  +  + + + F          + +   L+ 
Sbjct: 56  GPEEIEKSVTKIVEGAVATVNNIKNITSTSMEDFSNVLVEFNWGTDLTEATEDIREALEQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +  K ++      + S++         I            Q   QI  ++   
Sbjct: 116 VTDLLPDNADKPVIRKFDMDDTSLMEVAVY---GIDDQSTLYNIADNQIAPQIKQAKGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  Q+  + + +RL+       +++      NN+  G      F + +     
Sbjct: 173 QAKVMGGLKSQIKIDVNLNRLKAYNININEIASALSRDNNNLVGGQADQGFYKYTIRTMG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I    +                 +  D   +          + +     ++  
Sbjct: 233 EITSIDDIKNTTI----------------TLIKDGENSSVIKVQDLAEVYEGYDDNVNII 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          S ++  +     +                    +      +   S S 
Sbjct: 277 RVNGENSISIAVSKESGANTVEVSKNVIKQLEEY--NFPDGVKYQIMFNTADSINESISG 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                       +IVL + +   +   +   SI L++I+T  L+  +  TL + S++G+V
Sbjct: 335 VLDAAWQGGLFAVIVLMLYMWNIRTVSIIAISIPLSIIVTFTLMYFMKVTLNVISLSGLV 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           LGIG+ VD++I+V E I          + S   G S+    I  S  T +   +   +  
Sbjct: 395 LGIGMMVDNSIVVLENIFYYRNNGFGKYSSAINGTSKVSLAISASTFTTIAVFLPFIYLE 454

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
                  R   IT+ +S++ S+  A+ IV      ++  K++K +    +     I   I
Sbjct: 455 GMVSQMFRDLCITVTISMIASLLVALLIVPMFGARLVTNKRLKLLGKLEILTNKYIHSNI 514

Query: 539 AIQFM-------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
              +        + +   +  S++     I          G       Q  VL   P+  
Sbjct: 515 NNIYNKILSFSIKRKLVVLLPSMILVFSVIIFGLKFIGKEGFPRTDEGQFMVLVTMPIGT 574

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
              ++      + +   +    +   +     +  ++ +    +++  K    +  ++  
Sbjct: 575 KYEQTQSFVALMENDIREIIKDDLTRIQSRIRKGSEANSANIRIQLKAKNAGRVGDINEY 634

Query: 652 QNTE 655
               
Sbjct: 635 AERT 638



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 80/235 (34%), Gaps = 6/235 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++  +       +    ++     +            + E+ +    ++   S I    
Sbjct: 786  SSIADIVKSYGPNRIERKDRKRFTVVIANTYGRPLNEIIDEVKEVIKKDVFVPSGISINY 845

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E   + +  +I++ + +   +  +F+           +      +L    + 
Sbjct: 846  GGDFEDMNEAFAQLLQTLILALVLVYAIMASQFESLIAPFVIAFAIPFGFAGSLAALIIT 905

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                +  +    + LIG  VN+ +V+ D M  N  ++   I   +    +    L   + 
Sbjct: 906  NTTLSAYSAIGCIVLIGIVVNNGIVLIDYM--NQLMHEKHIKGDEAALIAGQRRLRPVLM 963

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            T++   + +LPMA+    G  +    A  +  G+ V+   ++ I   I   I + 
Sbjct: 964  TTLTTILGILPMALGIGSGNEMYKPLATALLGGLSVSTLFTLIIVPTIYAAIRNK 1018



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 91/257 (35%), Gaps = 14/257 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +  V+   E  +  D +           + +            V + V K++
Sbjct: 248 IKDGENSSVIKVQDLAEVYEGYDDNVNIIRVNGENSISIAVSKESGANTVEVSKNVIKQL 307

Query: 643 TEIVPLSTIQNTEIVGPKIS-----RELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGA 696
            E      ++   +     S       ++     G + + I +++Y+W IR     ++ A
Sbjct: 308 EEYNFPDGVKYQIMFNTADSINESISGVLDAAWQGGLFAVIVLMLYMWNIR---TVSIIA 364

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           I ++ L I  T        +  N+ +++ ++  IG  V++ +VV + +           S
Sbjct: 365 I-SIPLSIIVTFTLMYFMKVTLNVISLSGLVLGIGMMVDNSIVVLENIFYYRNNGFGKYS 423

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                   ++  +  S +T++A F+  + +      +       +   + ++  +S+ +A
Sbjct: 424 SAINGTSKVSLAISASTFTTIAVFLPFIYLEGMVSQMFRD----LCITVTISMIASLLVA 479

Query: 817 APILLFIYDWRAKNARI 833
             I+         N R+
Sbjct: 480 LLIVPMFGARLVTNKRL 496


>gi|228470347|ref|ZP_04055251.1| AcrB/AcrD/AcrF family protein [Porphyromonas uenonis 60-3]
 gi|228308090|gb|EEK16965.1| AcrB/AcrD/AcrF family protein [Porphyromonas uenonis 60-3]
          Length = 1046

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 81/684 (11%), Positives = 190/684 (27%), Gaps = 49/684 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +++  I  IG+       L       FPS                   V    
Sbjct: 9   KRPIAAAMIFVAILVIGVFSLTKLPLDLMPNMEFPSLT--------------VITVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    + + S  +         ++  + I L +         A+     L+ 
Sbjct: 55  SAIEVEEQVSKPLEAVLSSAENLVEIKSISKENVSFIQLRYEWEEDITAAANNARDLLEL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S++       ++       + I+    N D+  +   E    +  Q    +   +   
Sbjct: 115 VKSRMPSQAYTPIIYKINASMMPILGYAVNADENYNGLEEI---VEDQIASALRKVDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +   +   ++  E DP+R++    + A++S      N +             S     
Sbjct: 172 TVIYLGQPQREIRVEIDPTRMQAYGMSVAQLSMMLKANNINVPSGFVTESAYDFSVRMPG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   E+    +                         +         +           
Sbjct: 232 KYESVEELENTVIKAF--------------------NGKVVRIKDVATVRDTFKETDASA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +    +       A ++              +      S + 
Sbjct: 272 FNHVGKGIALLVQKQSGANTVDVVNAVRAEIADIQKDLPSDVQIFEVIGSDELVTSSINN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +       V +V+ + +   +  L+   ++ +++I    ++++LG T+ + S+  +V
Sbjct: 332 LSSSIWYALIFVTLVVLLFLREWRSSLIVFLTMPVSLISAFIVMNVLGYTINIFSLVALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD+ I+V E I +   +      +   G S     I  S +T ++  + L F G
Sbjct: 392 IAIGMVVDNAIVVLENITQHIERGAMPKQAAMFGASEMGLAIAASTLTTIVVFLPLVFMG 451

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI---------DINPLS 529
           G      +  A+     ++ S+FTA+++   +   +++                    + 
Sbjct: 452 GIVGVMFKQLAVLTVTCMITSLFTALALTPMLSSVLLKPAPRGGKGKKHGKLYNWSERMF 511

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           +         + +         +S L     + LL        I       + +      
Sbjct: 512 QRIERVYHDFLGWAVFHKGITLVSALVIFALVLLLGKAVGTDYIPDIDAGSVSIQFETEQ 571

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S   +     QI  +   +        +       D    T V     K I  I    
Sbjct: 572 GTSHTLTEQVGNQIVQLLQDHVPEIAEGGIASITGQTDDGVLTAVGFKEGKNIGTIFCHL 631

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
              +      +   + IR  I  +
Sbjct: 632 KPVDERKRSSQQIADDIRPLIEAI 655



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 84/255 (32%), Gaps = 8/255 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +     +   +    +  +Q  +   Q     +   V++              +  +  
Sbjct: 784  EMQVTNLLGQQIPLIAVADIQEKEGPVQIERLTQQRYVKVTANLNGISLGDGAKKAEQII 843

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTL 700
                 P     +                ++ V I  + + + +  +F+        +  +
Sbjct: 844  ADLDTPQGVTVSLGGQVEDQGDTFSSLTVIFV-IGLLLVFMVMAAQFESLVDPFIILFAI 902

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               +   +  F + G   ++     ++ L+G  VN+ +V+ D    +  L     + RD 
Sbjct: 903  PFTLVGVILAFLITGTTLSVVTFIGLIMLVGIVVNNGIVLVD---YSNMLVRRGYTIRDA 959

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            + +S    L   + TSM   + +LPMA+    G  +     I +  G++++   ++ +  
Sbjct: 960  VMESGRSRLRPVLMTSMTTILGMLPMALSRGMGKELYAPLGITIIGGLLISMLVTLILVP 1019

Query: 818  PILLFIYDWRAKNAR 832
                 ++  +    R
Sbjct: 1020 TAYAAVHQHKLNKER 1034



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/196 (14%), Positives = 72/196 (36%), Gaps = 9/196 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +  ++K +   V +  +  ++ +       L       +I   + +L+++    
Sbjct: 296 NAVRAEIADIQKDLPSDVQIFEVIGSDELVTSSINNLSSSIWYALIFVTLVVLLFL---R 352

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +W  +L    T+ + +        + G   N+ ++ A++  IG  V++ +VV + +    
Sbjct: 353 EWRSSLIVFLTMPVSLISAFIVMNVLGYTINIFSLVALVIAIGMVVDNAIVVLENI---T 409

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI-PMAFGIVV 807
           +        +       +E       +++   +  LP+   GG  I       +A   V 
Sbjct: 410 QHIERGAMPKQAAMFGASEMGLAIAASTLTTIVVFLPLVFMGG--IVGVMFKQLAVLTVT 467

Query: 808 AASSSIFIAAPILLFI 823
              +S+F A  +   +
Sbjct: 468 CMITSLFTALALTPML 483


>gi|330881945|gb|EGH16094.1| AcrB/AcrD/AcrF family transporter [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 406

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 43/432 (9%), Positives = 106/432 (24%), Gaps = 39/432 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P   P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPSLPVAQYPDVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGTNPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV--ISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   N          +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLLIFTLNYKDGSATKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGYGLSIDDVNAAIRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLHANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T          L           +       
Sbjct: 275 QDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPEGVEFSIPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      LV +V+F+ +   ++ L+    + + +  TLA++ L+G ++ +
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGTLAIMYLMGFSVNM 394

Query: 415 PSIAGIVLGIGL 426
            ++ G+VL IG+
Sbjct: 395 MTMFGMVLAIGI 406



 Score = 43.1 bits (99), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 1/145 (0%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS V       Q      +                 +++   R +     +++   P 
Sbjct: 262 VHLSDVARVAIGSQDYSFESRLNGQRAVAGAVQLSPGANAIQTARAVNQRLTELSVNFPE 321

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      +     I K I  +I + + + + +++  +   + L     + + +  T
Sbjct: 322 GVEFSIPYDTSRFVDVAIDKVIYTLIEAMVLVFLVMFLFLQNIRYTLIPTIVVPVCLAGT 381

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGY 732
           L    L G   N+  +  ++  IG 
Sbjct: 382 LAIMYLMGFSVNMMTMFGMVLAIGI 406


>gi|328950565|ref|YP_004367900.1| acriflavin resistance protein [Marinithermus hydrothermalis DSM
           14884]
 gi|328450889|gb|AEB11790.1| acriflavin resistance protein [Marinithermus hydrothermalis DSM
           14884]
          Length = 1109

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 56/552 (10%), Positives = 144/552 (26%), Gaps = 44/552 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   +   ++  +  +GL+        +  ++  P                   +    
Sbjct: 10  LKRAVFATAIFLGMVLVGLI-----LGSRLGVELLPRFSIPVV---------AVSVAYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++  S L    +   +  +    + + F      +    +V+  + 
Sbjct: 56  AGPEEVAEQVAKPLEDALSTLTGVDVLGSTSTEGFALVFVQFKQEVDVDQALVEVSQKVA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  D    ++      +  I+                          ++ +    
Sbjct: 116 AARGSLPQDASAPVVQKFDPNQSPILYLFLEAPG--EDLARLGRYAREVLKPRLQLVSGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +    DP +L     +  ++       + +           R +   +
Sbjct: 174 ADIRISGVPEEAIQVLLDPKKLAAYALSPTRVVQAIQASSLNLPLGSLEDEDRRVTYTLR 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  E++GI ++                                  +          
Sbjct: 234 NTPATPEEVAGILVDPVRG----------------------LKVGDLGRVLLAKEDPRSL 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L              + +            A  R    P     V          +  
Sbjct: 272 ARLNGVPGILLGVLKTPESNAVSVARGVKQAVAETR--LPPGYRVQVASDTTRFIEAAVQ 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  + A  V +V+ + V           +I + +   L L  ++G T  L S+  +
Sbjct: 330 DTFREMLLAALAVSLVVLVFVGQLNSAFSVILAIPITLSGALILFGVMGFTFNLISLLAL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G+ VD +I+V E I    ++ +  F ++  G S+    +  + ++ L   + + F 
Sbjct: 390 TVAVGIVVDDSIVVAENIDRLRKEGKKPFEAVLEGASQVSVAVAAATLSLLAVFLPISFL 449

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + F + +  +I IS   A   +   + +     +  ++     +   L  D 
Sbjct: 450 PGIVGQIFQQFGLVLAAAIAISWLEAFLFLTVRLAYFPDP-EPPTLGEALRALRLLPQDL 508

Query: 538 IAIQFMRARFWG 549
                   R   
Sbjct: 509 AWAYARGFRTVW 520



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 75/213 (35%), Gaps = 8/213 (3%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + +  +P          E+        V    ++ +      ++ +L+        ++ +
Sbjct: 882  ININLRPDAPGVFQVQRELENLLREAGVVGEGVELSSAGTASLTEDLVTLAPQAFALALV 941

Query: 679  AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
               + +  +F  W + L  + T+ L +   L    L G   ++ +V  V+ LIG    + 
Sbjct: 942  LNYLVLASQFNSWTYPLYLLLTVPLALVGALWLTYLLGTGLDVISVLGVVMLIGLVTKNA 1001

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            V++ D            +  ++ + ++    L   + T++   I  LP+ +    G    
Sbjct: 1002 VLLLD----FAVKLRERMPLKEALVEAGRLRLRPILMTTLTVLIISLPLLLGLGEGAEYR 1057

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                + +  G+V +   ++F+           R
Sbjct: 1058 RPLGVIILGGLVSSTLLTLFVVPAAFYLFEGRR 1090



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ +    L+ +    +   A   I  + + ++  L  F + G  FNL ++ A+   +G
Sbjct: 335 MLLAALAVSLVVLVFVGQLNSAFSVILAIPITLSGALILFGVMGFTFNLISLLALTVAVG 394

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
             V+D +VV + +    +L        + + +  ++        +++     LP++    
Sbjct: 395 IVVDDSIVVAENI---DRLRKEGKKPFEAVLEGASQVSVAVAAATLSLLAVFLPISFLPG 451

Query: 791 --GSVIGSFAIPMAFGIVVA 808
             G +   F + +A  I ++
Sbjct: 452 IVGQIFQQFGLVLAAAIAIS 471


>gi|108757248|ref|YP_628797.1| AcrB/AcrD/AcrF family efflux transporter inner membrane protein
           [Myxococcus xanthus DK 1622]
 gi|108461128|gb|ABF86313.1| efflux transporter, AcrB/AcrD/AcrF family, inner membrane component
           [Myxococcus xanthus DK 1622]
          Length = 1063

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 57/566 (10%), Positives = 152/566 (26%), Gaps = 41/566 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +     +   GL+      L     D FP   P               +V    
Sbjct: 9   KRPIITINSMLALVVFGLVS-----LGLLETDEFPDVQPPVV---------SVTIVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM--RQIQNKITLSFADSRFKENIADKVTLFL 119
             + V   +    ++    +        +          T+ F   +  +     +   +
Sbjct: 55  SPETVEREILEPIEDAIFAISGVDPKETTSIATDGLASFTVFFDFEKDIQEATQDIRDAI 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               + L  + ++ +L      +  IV      + +       S+      + ++     
Sbjct: 115 SSKRADLPQEMEEPILTRFDPADQPIVSLTLTSEGL--DVAALSLVADPTVVGELRSVPG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q      +  ++  +  P  L+    + A++       N +            +S   
Sbjct: 173 VAQAEVVGDVAREMTVQLKPEALQAAGLSVAEVVAALQAQNLAAPVGRINAPLTEESIRL 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           +  +E   +                       +       R        ++         
Sbjct: 233 KGRLEKVEDF--------------------RTMVVASRNGRAIRLEQVADVFVGAEEPRT 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +                 S     +        L+          +          + 
Sbjct: 273 LALFNGAQAVGIDVLKARGYSTTEVADAVRERVHALQQRLPAGVKLEIVRDAGVRVENAV 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              +      A L ++V+F+ +   +  ++   ++ ++V+ +   +   G TL   S+ G
Sbjct: 333 HNVQSALVEGALLTVLVVFVFLNSWRSTVITGLALPVSVLASFISVWAFGFTLNTMSLLG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVV 476
           + L IG+ +D  I+V E I       +  + +   G S    A S    S +   +    
Sbjct: 393 LTLAIGILIDDAIVVRENIVRHVEMGKDHYTASREGTSEIGLAVSATTFSIVAVFVPVAF 452

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           ++   G   + FA+T+  ++L+S+F + S+   +  +     + ++      +       
Sbjct: 453 MYGVAGQWFKPFALTIACAVLVSLFVSFSLDPMLSAYWPEPPRKQNPGFITRTLNRFNAW 512

Query: 537 CIAIQFMRARFWGVGISILFSICSIC 562
                          +     +  + 
Sbjct: 513 FDRQAERYKHVIAWALDHRLVMVLVA 538



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 80/258 (31%), Gaps = 9/258 (3%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + +     R + L  V       +           +   +  L+ +   +      +   
Sbjct: 245 MVVASRNGRAIRLEQVADVFVGAEEPRTLALFNGAQAVGIDVLKARGYSTTEVADAVRER 304

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAI 697
              + + +P                  +      ++  + + +L+       W   +   
Sbjct: 305 VHALQQRLPAGVKLEIVRDAGVRVENAVHNVQSALVEGALLTVLVVFVFLNSWRSTVITG 364

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-TTSIS 756
             L + +  +      FG   N  ++  +   IG  ++D +VV    R+N+  +      
Sbjct: 365 LALPVSVLASFISVWAFGFTLNTMSLLGLTLAIGILIDDAIVV----RENIVRHVEMGKD 420

Query: 757 FRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
                 +  +E    +  + ++ +A F+ V  M    G     FA+ +A  ++V+   S 
Sbjct: 421 HYTASREGTSEIGLAVSATTFSIVAVFVPVAFMYGVAGQWFKPFALTIACAVLVSLFVSF 480

Query: 814 FIAAPILLFIYDWRAKNA 831
            +   +  +  +   K  
Sbjct: 481 SLDPMLSAYWPEPPRKQN 498



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 69/179 (38%), Gaps = 4/179 (2%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V          + + V   ++K++  +        T         E+  +  + + 
Sbjct: 809 NRERVINVQANVQGRSLSEVGADIEKRLDGVKLPPGYMLTTGGESADQAEVFMRVFIALG 868

Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           ++ + M + + I+F  +   L  + +L L +   +    + G   NL ++  ++ L+G  
Sbjct: 869 MALMLMYLILVIQFGSFLDPLAILISLPLSLIGVVLALLITGDTLNLMSLIGIMLLMGIV 928

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             + +++ D  +     +   +  R+ + ++    L   + T+ A    ++P+A+  G 
Sbjct: 929 AKNAILLIDFAK---WSHEKGMPLREALIEAGRIRLRPIIMTTFALVAGMVPVAIGAGE 984


>gi|253989247|ref|YP_003040603.1| multidrug efflux system subunit MdtB [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253780697|emb|CAQ83859.1| multidrug resistance protein mdtb (multidrug transporter mdtb)
           [Photorhabdus asymbiotica]
          Length = 1048

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 58/541 (10%), Positives = 144/541 (26%), Gaps = 42/541 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                 +    I   G++           +   P+                  +V     
Sbjct: 19  RPVATTLFMVAILLAGII-----GYRMLPVSALPAVDYPT-----------IQVVTFYPG 62

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D +   +    +     +              + ITL F  +   +    +V   + 
Sbjct: 63  ASPDVMTSAVTAPLERQLGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAIN 122

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             ++ L  D     +          +L+   +        +    +  +   +I      
Sbjct: 123 AASNLLPNDLPYPPIYNKVNPADPPILT-LAVTSDAMPMTQIQDMVETRVAQKISQVNGV 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      +  + +   +      +  +       N +                  
Sbjct: 182 GLVTLAGGQRPAVRVKLNAQAVAAQGLDSETIRTAINSANVNSAKGSLDGPTRS------ 235

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                            +AN   K+      +                 I +       G
Sbjct: 236 --------------VTLSANDQMKSVDDYRKLIIAYKNGAPVRLQDVATIEQGAENSKLG 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +  ++   T +    +   L +         +          S  
Sbjct: 282 AWANGKQAIVINVQRQPGVNVIETTDNIRQMLPELISSLPKSVDIKILTDRTTTIRASVK 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   LV++V+++ +  G   L+   ++ L+++ T A++   G ++   ++  +
Sbjct: 342 DVQFELLLAVVLVVMVIYLFLRSGIATLIPSIAVPLSLVGTFAIMYFCGFSINNLTLMAL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I+V E I     + +    +   G      TI     + +   + LFF 
Sbjct: 402 TIATGFVVDDAIVVIENISRYIEQGEKPMAAALKGAGEIGFTIISLTFSLIAVLIPLFFM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FAIT+ ++ILIS   ++++   M   +++ +     +    +        
Sbjct: 462 GDIVGRLFREFAITLAIAILISAVVSLTLTPMMCARMLKSESQVKHNRFEQASEHFFKRI 521

Query: 538 I 538
           I
Sbjct: 522 I 522



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/139 (18%), Positives = 52/139 (37%), Gaps = 7/139 (5%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           IY+++R      L     + L +  T       G   N   + A+    G+ V+D +VV 
Sbjct: 358 IYLFLRSGI-ATLIPSIAVPLSLVGTFAIMYFCGFSINNLTLMALTIATGFVVDDAIVVI 416

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFA 798
           + +    +             K   E     +  + +    ++P+   G   G +   FA
Sbjct: 417 ENI---SRYIEQGEKPMAAALKGAGEIGFTIISLTFSLIAVLIPLFFMGDIVGRLFREFA 473

Query: 799 IPMAFGIVVAASSSIFIAA 817
           I +A  I+++A  S+ +  
Sbjct: 474 ITLAIAILISAVVSLTLTP 492



 Score = 45.5 bits (105), Expect = 0.042,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 80/218 (36%), Gaps = 7/218 (3%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                +    + +  + +  V+     I     +              +   +  +  +  
Sbjct: 816  TTFSFNVSGNASLEQSVNAVRNAAQLIEMPKDMTIKFQGTTLAFESALGNTLWLIAAAVT 875

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            AM I + I ++ +   +  ++TL       L    + G E ++ A+  ++ LIG    + 
Sbjct: 876  AMYIVLGILYESFIHPVTILSTLPTAGVGALLALMMTGQELDVIAIIGIILLIGIVKKNA 935

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ D            +   + I ++        + T+MAA    LP+ +    G  + 
Sbjct: 936  IMMID--FALAAEREQGLPPYEAIYQACLLRFRPILMTTMAALFGALPLMLSAGVGAELR 993

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                I M  G++++   ++F   P++  ++D  A+  R
Sbjct: 994  RPLGICMVGGLIMSQILTLF-TTPVVYLLFDKLARYRR 1030


>gi|222837873|gb|EEE76238.1| ECOLI acriflavine resistance protein b [Populus trichocarpa]
          Length = 602

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 60/492 (12%), Positives = 133/492 (27%), Gaps = 25/492 (5%)

Query: 82  KKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
                     +      IT+SF      +     V   L     +L     +  +     
Sbjct: 5   PGLVYMESVAQADGTGSITISFEAGTNVDLAQVDVQNRLSRATPRLPASVTQQGVRVDKA 64

Query: 141 KEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
               ++    + +       +       R  + +I       Q          +    DP
Sbjct: 65  SSNFLLFIMLSSEDAKAYDTVALGDYASRNIVPEIQRVAGVGQAQLFGT-EKAMRIWFDP 123

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           ++L+    +   ++      N        G             V    ++S         
Sbjct: 124 AKLQGYKLSAEDVTAAIRSQNAQVASGAIGDLPNITGQKIAATVTVMGQLS--------- 174

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
                  +    +                 +            L                
Sbjct: 175 ----SIGQFENIVLRANPDGSTVRLKDVATVEIGGQAYATSARLNGKDAVGIGVQLTPSG 230

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +   T +        L+          +   +      S      T      LV +V+F+
Sbjct: 231 NALATAKAVHARMEELQKFFPKGVKYSIPYDSSKFVSISIEKVAHTLLEAIVLVFLVMFL 290

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
            +   ++ L+    + + ++ T A++  +G ++ + ++ G+VL IG+ VD  I+V E + 
Sbjct: 291 FLQNWRYTLIPTIVVPIALLGTFAVMQAVGFSINVLAMFGMVLVIGIVVDDAIVVVENVE 350

Query: 440 EEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLS 495
                +      +      +    I    +  +   + L FF    G   R F+I M  S
Sbjct: 351 RIMSEEGLQPREAAIKAMGQISGAIVGITLVLIAVFIPLAFFAGSTGNIYRQFSIVMVAS 410

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
           I  S F A+++  A+   +     +K ++                 F R+     G    
Sbjct: 411 ISFSAFMALTLTPALCATL-----LKPVEAGHHHEKKGFFGWFNRTFARSAKSYEGWVAR 465

Query: 556 FSICSICLLFTH 567
               S+ ++  +
Sbjct: 466 LLKRSVLMIGVY 477



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 91/241 (37%), Gaps = 6/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +     Q    S +    +   +       G+++A  + +    +++ +  P 
Sbjct: 193 VRLKDVATVEIGGQAYATSARLNGKDAVGIGVQLTPSGNALATAKAVHARMEELQKFFPK 252

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
               +      K     I K    ++ + + + + +++  + W + L     + + +  T
Sbjct: 253 GVKYSIPYDSSKFVSISIEKVAHTLLEAIVLVFLVMFLFLQNWRYTLIPTIVVPIALLGT 312

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+ A+  ++ +IG  V+D +VV + +     +    +  R+   K++ +
Sbjct: 313 FAVMQAVGFSINVLAMFGMVLVIGIVVDDAIVVVENV--ERIMSEEGLQPREAAIKAMGQ 370

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             G  V  ++      +P+A + GS       F+I M   I  +A  ++ +   +   + 
Sbjct: 371 ISGAIVGITLVLIAVFIPLAFFAGSTGNIYRQFSIVMVASISFSAFMALTLTPALCATLL 430

Query: 825 D 825
            
Sbjct: 431 K 431


>gi|153007687|ref|YP_001368902.1| acriflavin resistance protein [Ochrobactrum anthropi ATCC 49188]
 gi|151559575|gb|ABS13073.1| acriflavin resistance protein [Ochrobactrum anthropi ATCC 49188]
          Length = 1050

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 61/516 (11%), Positives = 153/516 (29%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       +++  D  G         
Sbjct: 19  RRPVFAFVINVLIVVAGLAA-----FTGVDIRELPDVDRP-VVTISTDFSG--------A 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  L    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 65  SAETIDRQLTQVLENAVARVSGVKSISSTSSFERSRVTVEFNDGVDLNVAAADMRDAISR 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + +  +   + ++        ++      D +     + ++ +  Q  D +       
Sbjct: 125 VANDVPEEADPSRIIKADSNADPVMRLAVTSDTMSVD--DMTVLVEDQIQDILSAVPGVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + + +RL     T A +S                            
Sbjct: 183 DVQINGDRDKIFRIDINQARLASYGLTIADISTALSSMGLDAPAGSLRSADQSIVVRATA 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++NG T                               +     +     
Sbjct: 243 NLEKPEDFENVYINGRTQI------------------------RDVATVTLGPDIESSAV 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +     E      A L+          V   +     G+   
Sbjct: 279 RSNGKTAIGLGIVRQAQSNTLDISEGIRAAVANLQKTLPAGVNIAVTSDDANFINGAIHE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++F+ +   +  L+   S+ + +I T+A + L G ++ + ++  +V
Sbjct: 339 VEIALIASVIIVVAIIFVFLWDIRATLIPALSMPVALIGTIAAIYLAGFSVNILTLLALV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 399 LATGLVVDDAIVVLENVVRRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 458

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              GG  R F   + +++L+S   A+++   +    
Sbjct: 459 GQAGGLFREFGFVLAIAVLLSSVVALTLCPMLASRF 494



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 51/134 (38%), Gaps = 6/134 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ + +  T+    L G   N+  + A++   G  V+D +VV + +   +
Sbjct: 360 DIRATLIPALSMPVALIGTIAAIYLAGFSVNILTLLALVLATGLVVDDAIVVLENV---V 416

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +     +  R        E     + T++      +P++      G +   F   +A  +
Sbjct: 417 RRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAGGLFREFGFVLAIAV 476

Query: 806 VVAASSSIFIAAPI 819
           ++++  ++ +   +
Sbjct: 477 LLSSVVALTLCPML 490



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 86/239 (35%), Gaps = 9/239 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            + S+            ++    R      +      + +  K       PL    +  I 
Sbjct: 786  MSSIATVVEKAVPPQLDRETRQRSVSITTNLRDDFALGDAYKVAQEIAAPLLPPGSHIIP 845

Query: 658  GPKISRELIRKGIVGVIISA--IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              + S        + ++     I +L+ +  +F+ +  AL  + T+ L +   +    L 
Sbjct: 846  LAEASTLSETSSGLAMVFGFAIIIILLVLAAQFESFVSALIVMATVPLGLGCAVFAMLLT 905

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ +   ++ L+G    + +++ +      +L    +S R+ I+++ N  L     
Sbjct: 906  GTSLNVYSQIGLVLLVGIMAKNGILIVEFA---DQLRDRGLSVREAIEEASNIRLRPVCM 962

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            T + A +  +P+ +    G     +    +  G+ +A  +++++     L +  +    
Sbjct: 963  TMICAVLGGVPLVLASGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTQPK 1021


>gi|119774557|ref|YP_927297.1| AcrB/AcrD/AcrF family protein [Shewanella amazonensis SB2B]
 gi|119767057|gb|ABL99627.1| AcrB/AcrD/AcrF family protein [Shewanella amazonensis SB2B]
          Length = 1081

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 68/513 (13%), Positives = 145/513 (28%), Gaps = 41/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++        +  +   P                    + +  
Sbjct: 9   QRPVTVWMFMLAVILFGMV-----GFSRLAVMLLPDLSYPTVT---------IRTLYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +     V   L  
Sbjct: 55  APVEVEQLVSKPIEESVGTVKGLRKISSVSRSGMSDVILEFEWGTDMDMANLDVREKLDI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIGISEST 180
           +   L +D +K LL+        I+    + ++       +       +   Q+      
Sbjct: 115 I--ALPLDVQKPLLLRFNPNLDPIMRVALSREEASGDELKQLRTYADEELKRQLEGLPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++    +  RL QL     ++                            
Sbjct: 173 AAVRLSGGLEQEVQILLNQERLSQLDLDAEQIRSRIAAE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V     + G             + + +  +     G           I        D 
Sbjct: 213 LNVSAGKVVQGDKEYLVRTLNQFNSLEELGQVVVYRNGQSLVRLFEVATIVDGHKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +      +     +   +     +        +       K+ I           + S
Sbjct: 273 TRIGQRESIELAIYKEGDANTVTVAKKLKQDIERINGKDPLAKMEI-IYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  I + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALIGSILAMLVIYLFLRDIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L +GL VD+ I+V E I    ++  S   +   G       IF S +T L   V L F 
Sbjct: 392 ALAVGLLVDNAIVVLENIDRYKQQGLSRIDAAIKGTREVSGAIFASTLTTLAVFVPLVFV 451

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
               G      A+T+  ++L S+  A++ +  +
Sbjct: 452 DGIAGALFSDQALTVTFALLASLLVALTSIPML 484



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 109/289 (37%), Gaps = 13/289 (4%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                 S+      I +         I   G + +   A  P+ LS V      L    I+
Sbjct: 793  VASKYSLRDRKIDILVRAEETERDQISDIGNMIINPDAATPIPLSAVADVKLELGPSAIN 852

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
              +          L +             + K+++   +  S     E +         +
Sbjct: 853  RISQQRVALVSANLAFGDLAEAVTEARSILAKQQLPASIQASFGGQNEEMEHS-----FQ 907

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
               + ++++   + + +  +F+ +   L  +  + + ++ ++    L G   ++     +
Sbjct: 908  SLQIALVLAVFLVYLVMASQFESFLHPLLILFAVPMAVSGSVFGLYLTGTHVSVVVFIGL 967

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + L G  VN+ +V+ DR+    +L +  +   + I ++    L   + T++   + +LPM
Sbjct: 968  IMLAGIVVNNAIVLIDRIN---QLRSEGVEKLEAISEAAKSRLRPIMMTTLTTVLGLLPM 1024

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            A+    G  V    AI + FG+ ++   ++ +  P+L  ++D +   A+
Sbjct: 1025 ALGLGDGAEVRAPMAITVIFGLALSTLLTL-VLIPVLYALFDRKEFVAK 1072



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 3/179 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             +    ++V   + L+   ++I    PL+ ++        I   +       +I S +A
Sbjct: 285 IYKEGDANTVTVAKKLKQDIERINGKDPLAKMEIIYDQSEFIESAVSEVTSSALIGSILA 344

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ML+           L    ++   +  T        I  N+ ++  +   +G  V++ +V
Sbjct: 345 MLVIYLFLRDIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAIV 404

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V + +    +     +S  D   K   E  G    +++      +P+    G     F+
Sbjct: 405 VLENI---DRYKQQGLSRIDAAIKGTREVSGAIFASTLTTLAVFVPLVFVDGIAGALFS 460



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 55/535 (10%), Positives = 153/535 (28%), Gaps = 56/535 (10%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
                + +++  +G+  +    LP+  ++  P+                  ++L    +  
Sbjct: 580  LKARVLTLVVALGITASAGLLLPRLGMELIPNMDQGEFY---------VEILLPPGTEVG 630

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-------------NKITLSFADSRFKENIA 112
                +          +                            ++ +  AD    E ++
Sbjct: 631  ETDRVLQQLAFSIKDMPAVKHAYSQAGSGGLMTSDVSRGGENWGRLQVVLADHDAFEQVS 690

Query: 113  DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
            D +   ++ +  +L    K   L +           +  +       ++QS + + + + 
Sbjct: 691  DVLRHEIRRI-PELEAKVKYPELFSFRTP------LEIELRGYELDLLKQSADSLVRALG 743

Query: 173  QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
            Q          L   +  + +    D +RL  L      ++                   
Sbjct: 744  QSERFADINTSLRDGQPELAIHF--DSNRLAALGMDAPTVANRIAQ-------------- 787

Query: 233  LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                 G     +  +    I +       +      + ++  +   A         ++  
Sbjct: 788  ---RIGGTVASKYSLRDRKIDILVRAEETERDQISDIGNMIINPDAATPIPLSAVADVKL 844

Query: 293  PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
             L      R+    V         A ++     E      ++L    LP  +        
Sbjct: 845  ELGPSAINRISQQRVA-----LVSANLAFGDLAEAVTEARSILAKQQLPASIQASFGGQN 899

Query: 353  GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                 S    +    +   LV +V+          L+  F++ + V  ++  L L G  +
Sbjct: 900  EEMEHSFQSLQIALVLAVFLVYLVMASQFESFLHPLLILFAVPMAVSGSVFGLYLTGTHV 959

Query: 413  TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            ++    G+++  G+ V++ I++ +RI +   +      ++          I  + +T ++
Sbjct: 960  SVVVFIGLIMLAGIVVNNAIVLIDRINQLRSEGVEKLEAISEAAKSRLRPIMMTTLTTVL 1019

Query: 473  ATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              + +      G       AIT+   + +S    + ++  +     R + +    
Sbjct: 1020 GLLPMALGLGDGAEVRAPMAITVIFGLALSTLLTLVLIPVLYALFDRKEFVAKTP 1074


>gi|331009064|gb|EGH89120.1| RND efflux transporter [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 1034

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 67/500 (13%), Positives = 141/500 (28%), Gaps = 37/500 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPIAPLPEAEFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       +TL F  ++  +  A +V   +     +L  D              S
Sbjct: 82  TQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADMPSLPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL   ++   +    E S         Q+   E   Q   + +    +  +  P +L  
Sbjct: 142 PVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L  T A +                              +          ++  ++N    
Sbjct: 201 LGLTLADIRLAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                         +   +   T
Sbjct: 241 KPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V          S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRIQRELPRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQL 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            Q +  +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMK 521
            ++++   +    +R     
Sbjct: 481 VSLTLAPTLAALFMRAPTHN 500



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 79/202 (39%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   ++I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVSMLDQAKKEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  ++ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGIVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               +S ++ I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLSPQEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     K 
Sbjct: 1000 QMLTLFTTPVIYLQLEQLFHKR 1021


>gi|261345979|ref|ZP_05973623.1| multidrug resistance protein MdtC [Providencia rustigianii DSM
           4541]
 gi|282565864|gb|EFB71399.1| multidrug resistance protein MdtC [Providencia rustigianii DSM
           4541]
          Length = 1033

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 83/642 (12%), Positives = 170/642 (26%), Gaps = 40/642 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G L  L   +       +P                     L    
Sbjct: 11  RPVATTLISVAITLCGALSFLYLPVAPLPQVDYPVIR--------------VTASLPGAS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S    +  ITL F  S+   N A +V   L   
Sbjct: 57  PETMASSIATPLERSLGSIAGLNEMTSSSSLGRTTITLEFDLSKDINNAAREVQAALNAA 116

Query: 123 NSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + L      +     +   +  I++          +  E       +   +I   E   
Sbjct: 117 QNLLPSGMPSRPRYYKSNPSDAPIMILTLTSK--TMNTGEIYDIASTRLAQRIAQIEGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P+ L     +   +       N  +          R       
Sbjct: 175 EVSVGGGSLPAVRVELNPTALFNQGVSLDTVRSAISSANVRQPQGYINDDENRYQVKTND 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                       I                 +   +  V    
Sbjct: 235 ELKKAAD--------------------YRPIIVHYNNGNAVKLSDVAVVKDSVQDVRAAG 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           + +       I   +A  +   T++        L           V +        S   
Sbjct: 275 MSSGEPAILIIIRREAGANIIETVKRIREELPELTELIPAAIDLQVAQDRTPTIKASLVE 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   LV++V+ + +  G+  L+   ++ +++I T   + L G +L   S+  + 
Sbjct: 335 VERALLIAVALVILVVLLFLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMALT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I       +  F +   G S    T+   +I+ +   + L    
Sbjct: 395 VATGFVVDDAIVVLENISRHIENGKKPFIAAVKGVSEVGFTVVSMSISLVAVFIPLLLMD 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FAIT+  +I IS+  ++++   M   +++ +       +      LI    
Sbjct: 455 GLVGRLFREFAITLATAIGISLIISLTLTPMMCAHLLKKRATDIHAKHRGFGRLLIRLQE 514

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           +             S+L  + +   L  +            Q        V      S  
Sbjct: 515 SYGVTLNWVLSHRRSVLAVLFAAIGLNVYLYISIPKAFFPEQDTGRLLGFVRADQSISFQ 574

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              Q      Q    +        +  G  V    +   +K 
Sbjct: 575 SMKQKMTRFMQEVKADPAVESVTGFTGGSRVNSGSMFISLKP 616



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +       +  ++K +T +   ST++ T     ++ ++ ++  +  ++ + + 
Sbjct: 804  TISFNVTEGYTLNDAMVEIEKTMTALGVPSTVRGTFAGTAQVFQDTLKSQLFLILAAIVT 863

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG  + + +
Sbjct: 864  VYLVLGILYESYIHPLTILSTLPSAGVGALLALELFNTPFSLIALIGIMLLIGIVMKNAI 923

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     IS R+ I ++        + T++AA    LP+ +    G  +  
Sbjct: 924  IMVDFALQAQRSGQ--ISAREAILRASLLRFRPILMTTLAAIFGALPLMLGSGDGAELRQ 981

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   ++F    + L     R + +R
Sbjct: 982  PLGIAIVGGLVMSQLLTLFTTPVVYLSFDSLRQRFSR 1018



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 6/145 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T     L G   N  ++ A+    G+ V+D +VV + + 
Sbjct: 353 FLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMALTVATGFVVDDAIVVLENI- 411

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +             K ++E     V  S++     +P+ +  G V      FAI +A
Sbjct: 412 --SRHIENGKKPFIAAVKGVSEVGFTVVSMSISLVAVFIPLLLMDGLVGRLFREFAITLA 469

Query: 803 FGIVVAASSSIFIAAPILLFIYDWR 827
             I ++   S+ +   +   +   R
Sbjct: 470 TAIGISLIISLTLTPMMCAHLLKKR 494


>gi|114327979|ref|YP_745136.1| acriflavin resistance plasma membrane protein [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316153|gb|ABI62213.1| acriflavin resistance plasma membrane protein [Granulibacter
           bethesdensis CGDNIH1]
          Length = 1066

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 82/590 (13%), Positives = 169/590 (28%), Gaps = 50/590 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G++           +   PS                  +V+ V++
Sbjct: 10  RPVATILLSIGILLTGIIA-----YRFLPVSALPSVDLPA-------------IVVFVNQ 51

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGV--FSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +       L   L +  G+     +     + I + F   R  ++ A  V   
Sbjct: 52  PGADPETMASSIAAPLERRLGEISGVMELISTNSVGASNIVVIFDLDRSVDSAAQDVQAA 111

Query: 119 LQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
           +    + L  D      +      E  +++     D       E           ++   
Sbjct: 112 INAARADLPSDLPVSPFIRKFNPAEAPVMMIALTSDS--HTIRELYDLADSMLGQRLAQV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q   +      +    DP RL     +   +                         
Sbjct: 170 NGVSQVQINGAEKPAVRISTDPMRLAAASLSGQDLYNVVRN------------------- 210

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                    V  +G        N      +    +                +I   +A  
Sbjct: 211 -TNVTQPTGVIENGDVRRAILINGQIDDAESYRKVVLKASNGGFLRLGDITDIVDGVANT 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           S ++  +   T++    +   LR+         +     G    
Sbjct: 270 RLSATSNGKPAILLQISKQSGANVIETVDGIKKILPQLRSWLPGDINMAIVVDRTGTIRA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T  +   LVL+V+F+ +      + A  ++ L++  TL  + LLG +L   S+
Sbjct: 330 SVDDVQFTLLVSIALVLMVVFVFMRRLMPTIAAAVTVPLSISGTLGAMWLLGYSLDNFSL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I +G+G  VD  I++ E I       +S   +   G S+   T+    ++ L   + +
Sbjct: 390 MAITIGVGFVVDDAIVMIENIVRHMEMGKSRLRAAIDGASQIGFTVISITLSLLAVFIPI 449

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFF 532
            F     G     F +T+ +SI+IS   ++++   +M    R               R  
Sbjct: 450 IFMPGIQGRLFHEFVMTLSVSIVISAVVSLTLTPMLMGVFGRQVHALDNPLLRRWDERVE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            + + I   ++R   W +  S L  +  +  +      Y    K  + + 
Sbjct: 510 HLLNGIERFYLRTLGWALKHSALMLLSMVLTIAVTVTLYRAIPKSFLPIQ 559



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 84/232 (36%), Gaps = 10/232 (4%)

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           +     +  +        + LQ            ++ +KK + ++           +   
Sbjct: 263 VDGVANTRLSATSNGKPAILLQISKQSGANVIETVDGIKKILPQLRSWLPGDINMAIVVD 322

Query: 661 ISRELI---RKGIVGVIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGI 716
            +  +          +++S   +L+ +++  +     + A  T+ L I+ TLG   L G 
Sbjct: 323 RTGTIRASVDDVQFTLLVSIALVLMVVFVFMRRLMPTIAAAVTVPLSISGTLGAMWLLGY 382

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             +  ++ A+   +G+ V+D +V+ + +   ++      S         ++     +  +
Sbjct: 383 SLDNFSLMAITIGVGFVVDDAIVMIENI---VRHMEMGKSRLRAAIDGASQIGFTVISIT 439

Query: 777 MAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++     +P+       G +   F + ++  IV++A  S+ +   ++     
Sbjct: 440 LSLLAVFIPIIFMPGIQGRLFHEFVMTLSVSIVISAVVSLTLTPMLMGVFGR 491


>gi|110637353|ref|YP_677560.1| acriflavin resistance protein D [Cytophaga hutchinsonii ATCC 33406]
 gi|110280034|gb|ABG58220.1| acriflavin resistance protein D [Cytophaga hutchinsonii ATCC 33406]
          Length = 1056

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 76/582 (13%), Positives = 164/582 (28%), Gaps = 40/582 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  +G L  +        + ++P   P               + +  +
Sbjct: 8   KRPVTAIVVSVVITLVGTLTLM-----NLPISQYPDITPPI-------------VQVTGN 49

Query: 62  EDDFVNGFLQMYS-DELRSFLKK---EGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                   ++      + + +           +        + ++F      +     V 
Sbjct: 50  FAGADAQTVERTIATPIEAQVNGSPGMSFLQTNSTSDGTMTMNVTFDVGTNIDIATLDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  D KK  L         ++L                        D +  
Sbjct: 110 NRVSVATPQLPDDVKKTGLTVRKRNPTILMLVAMYSPNGTHDVKFMDNYTNIYIKDALLR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +       +      +    +P +L Q   T  ++       N        G       
Sbjct: 170 VKGVGDI-FTRADNFSMRIWMNPDKLAQYGMTANEVVAKLQQQNVQVAAGSIGSSPQTPD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y ++    +               T    + +          +      +      
Sbjct: 229 QAFEYSIQVNGMLE------------KATDFENIVVRTKPDEGSIVYLKDVARVELGKFN 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +     +  +       +   T E        L+         +V   +V    
Sbjct: 277 YSSNNFVDGKRSSYLLVYQSPGSNALETAEGVYKAMEELKKSFPNDVEYVVPFESVSVVD 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   +I +++I T      LG T+   +
Sbjct: 337 VSIDEVVHTLVEALLLVIVVVFLFLQSWRATLIPILAIPVSIIGTFIFFIPLGFTVNTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G VL IG+ VD  I+V E  +      +      ++      +   I  + I A +  
Sbjct: 397 LFGFVLAIGIVVDDAIVVVEATQHYIDHEKLSPKEATIKAMKDISGPVIAIALILAAVFV 456

Query: 475 VVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V F  G  G   + FAIT+ +S+L+S F A+S+  A+   ++R   +          FF
Sbjct: 457 PVGFIPGIVGRLYQQFAITIAVSVLLSAFVALSLTPALCAMLLRPMHLDENSRGLNKFFF 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
              +  A                  I  I L+      +G+ 
Sbjct: 517 KFNNWFARVTASYSNGVKYCIRKAPIAIILLICIFVATFGLF 558



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 68/170 (40%), Gaps = 8/170 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL-DITKTLGFFALFGIEFNLTAVAA 725
              +    +S + + +++   ++ W      +  + L      L  + L  +  N+ A   
Sbjct: 875  SAVYIFALSIVFVFLFLAALYESWSVPFSVMLAVPLGAFGAILTLYFLPKLSNNVYAQIG 934

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++TLIG +  + +++ +  ++        +       +++   L   + TS+A  + VLP
Sbjct: 935  LITLIGLAAKNAILIVEFAKE---RVDKGMEIVAATIEAVQLRLRPILMTSLAFILGVLP 991

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + V    G     +    +  G++ A   +IFI   + + I     +N +
Sbjct: 992  LVVASGAGAVSRQTIGWTVFGGMLAATGLAIFIVPVLYVLIAKVAYRNHK 1041



 Score = 40.8 bits (93), Expect = 0.86,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 15/145 (10%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  I  + + I  T  FF   G   N   +   +  IG  V         + +  
Sbjct: 363 SWRATLIPILAIPVSIIGTFIFFIPLGFTVNTLTLFGFVLAIGIVV----DDAIVVVEAT 418

Query: 749 KLY--TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIP 800
           + Y     +S ++   K++ +  G  +     A I        G      G +   FAI 
Sbjct: 419 QHYIDHEKLSPKEATIKAMKDISGPVI---AIALILAAVFVPVGFIPGIVGRLYQQFAIT 475

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           +A  ++++A  ++ +   +   +  
Sbjct: 476 IAVSVLLSAFVALSLTPALCAMLLR 500


>gi|311747952|ref|ZP_07721737.1| cation/multidrug efflux pump [Algoriphagus sp. PR1]
 gi|126574925|gb|EAZ79283.1| cation/multidrug efflux pump [Algoriphagus sp. PR1]
          Length = 1134

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/524 (12%), Positives = 163/524 (31%), Gaps = 42/524 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N+  +VIL  +I  +GL     +       + FP  +    + +G    G S + +E   
Sbjct: 22  NSTSVVILTLIITVLGL-----SAYRNMPKESFPEIVIPT-VYVGTPYPGNSPVDME--- 72

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    ++    L        +  Q  + I + F            V   +   
Sbjct: 73  -----NLITRPIEKELKSLNDIKDINSTSVQDFSSIVIEFNPGVEISKAIQDVKDAVDKS 127

Query: 123 NSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            S+L  D  +   ++     +  I+    + +   +   +          D+I       
Sbjct: 128 KSELPTDLDQDPNVLEVNTSDFPIMNVNISGNYSEAELKKFGEY----LEDEIEKLPEIS 183

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +  +  ++    DP ++  +  +   ++                            
Sbjct: 184 KADLAGTVEREIQINADPYKMESVGVSFNDIAQAVQTE--------------------NV 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +      +G +      + +      + ++       +  +      +           
Sbjct: 224 TISGGNIRTGDYQRTLRVDGEFDDPMDLQNVIVKTDNQKIVYLRDVAEVKDTYKERTSYA 283

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       ++  +  +  +    +    +A   P  L I    +          
Sbjct: 284 RSKNLPVVTINVVKRSGENLLYAADKIKEIIETTKANRFPPDLEITITNDQSKQTRLQVS 343

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I   ++++++ M  L  +  L    +I L++ ++  +L+  G TL L  +  ++
Sbjct: 344 DLENSIIFGVILVVLVLMFFLGFRNALFVGIAIPLSMFISFLVLNAFGITLNLMVLFSLI 403

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD+ I+V E I     + +    +   G       I  S  T L A + L F+ 
Sbjct: 404 LALGMLVDNGIVVVENIYRLMSEGKDAVQAAKEGVGEVAWPIITSTATTLAAFLPLAFWK 463

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G  ++   IT+ + +  S+F A+ I   +    ++ + +  
Sbjct: 464 DIVGEFMKFLPITLIIVLSSSLFVALVINPVLTALYMKVEDVTK 507



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 83/220 (37%), Gaps = 7/220 (3%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V  +       A  ++ E+++       P            K +R  +      +I 
Sbjct: 292 TINVVKRSGENLLYAADKIKEIIETTKANRFPPDLEITITNDQSKQTRLQVSDLENSIIF 351

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             I +++ +     +  AL     + L +  +      FGI  NL  + +++  +G  V+
Sbjct: 352 GVILVVLVLMFFLGFRNALFVGIAIPLSMFISFLVLNAFGITLNLMVLFSLILALGMLVD 411

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           + +VV + +    +L +          + + E     + ++     + LP+A W   ++G
Sbjct: 412 NGIVVVENI---YRLMSEGKDAVQAAKEGVGEVAWPIITSTATTLAAFLPLAFWK-DIVG 467

Query: 796 SFAIPMAFGIVVAASSSIFIA---APILLFIYDWRAKNAR 832
            F   +   +++  SSS+F+A    P+L  +Y       +
Sbjct: 468 EFMKFLPITLIIVLSSSLFVALVINPVLTALYMKVEDVTK 507



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 102/299 (34%), Gaps = 34/299 (11%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
              Y I+     ++G          V  S +  ++ G         + +  + +     D 
Sbjct: 834  FRYDINTLVNKKIGFRDKFGTKREVPISAVAQIKYGSTYGSVKRKDLDKAITVYSNVLDG 893

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               T V   ++  +        I        +  ++ +   +  + I+   + + I  +F
Sbjct: 894  YNPTEVNAQIQAALQNYSVPDGISMKYTGEQEEQQKSMDFLLGALGIAVSLIFLIIVAQF 953

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFN-LTAVAAVLTLIGYSVNDKVVVYD---- 742
                     + +++L          +F ++F  +     +++L G  VN+ +V+ D    
Sbjct: 954  NSVTTPFIIMASVVLSTIGVFLGLVIFNMDFVVIMTGIGIISLAGVVVNNAIVLIDYTNL 1013

Query: 743  ---RMRKNMKLYTTSISFRDLIDKSINET----LGRSVYTSMAAFISVLPMAVWG----G 791
               R R+ + +        +L+  SI E+    L   + T++   + ++P+A+      G
Sbjct: 1014 VRERKREELGMGPKDHLPFNLMISSIVESGKTRLRPVLLTAITTVLGLIPLAIGMNINFG 1073

Query: 792  SVIGSF-----------------AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +++  F                 A  + FG+  A   ++ I   + L       +  RI
Sbjct: 1074 TLLSDFDPQFYVGGDNAAFWGPMAWTVIFGLTFATFLTLVIVPVMYLLADKLNMRLKRI 1132


>gi|148547409|ref|YP_001267511.1| acriflavin resistance protein [Pseudomonas putida F1]
 gi|148511467|gb|ABQ78327.1| acriflavin resistance protein [Pseudomonas putida F1]
          Length = 1035

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 56/538 (10%), Positives = 154/538 (28%), Gaps = 38/538 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   I  +G +           +   P       +             L   
Sbjct: 9   RRPVATMLLSLAIMLLGGVS-----FGLLPVAPLPQMDFPVIV---------VSANLSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S  Q   ++ + F   R  +  A +V   +  
Sbjct: 55  SPEVMASTVATPLERKLGSIAGVTTLTSSSNQGSTRVIIGFEMGRDIDGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 TRNLLPSGMRSMPTYKKINPSQAPIMV-LSLTSDVLQKGQLYDLADTILSQSLAQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +    +P  L Q   +  ++       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIAVEPQLLNQYNLSLDEVRTAVSNANQRRPMGFVEDTERNWQVRAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +   +             +   +    +  
Sbjct: 234 QLESAKD--------------------YEPVVIRQQNGTILRLSDVATVTDGVENRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + ++  +   T++        L++         V          +   
Sbjct: 274 FFNDQAAVLLVVNRQSGANIIETVDQIKAQLPALQSLLPASVQLNVAMDRSPVIKATLKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+++ +   +  L+   ++ ++++ T A++ + G +L   S+  ++
Sbjct: 334 AEHTLLIAVVLVILVVYLFLGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I       Q    +  +G      T+   N++ +   V + F G
Sbjct: 394 LATGLVVDDAIVVLENISRHIENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMG 453

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           G      + F+IT+  +I++S+  ++++   +    ++  + +   +   S       
Sbjct: 454 GIVRNLFQEFSITLAAAIIVSLVVSLTLTPMLCARWLKPHQAQQTRLQRWSDKLHQRM 511



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 54/152 (35%), Gaps = 7/152 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                  +L     + + +  T     + G   N  ++ A++   G  V+D +VV + + 
Sbjct: 352 FLGSLRASLIPSLAVPVSLVGTFAVMYVCGFSLNNLSLMALILATGLVVDDAIVVLENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +                 E     +  +++     + +   GG V      F+I +A
Sbjct: 411 --SRHIENGQPPMKAAFLGAKEVGFTLLSMNVSLVAVFVSILFMGGIVRNLFQEFSITLA 468

Query: 803 FGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
             I+V+   S+ +   +   ++   +A+  R+
Sbjct: 469 AAIIVSLVVSLTLTPMLCARWLKPHQAQQTRL 500



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 94/267 (35%), Gaps = 6/267 (2%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            N    +       V         V  S +   +    + +     +     + +   +  
Sbjct: 757  NPKYAWDPSTLEQVQVITADGARVPLSTIAHYENSLANDRVSHEGQFASEDIAFDVAEGY 816

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            +  + +  +++ + ++     +            +  +     ++ + + + + + I ++
Sbjct: 817  SPDQAMAALERAVAKLGLPEEVIAKLGGTADAFAQTQQGQPFMILGALLLVYLVLGILYE 876

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  ++TL       L    + G EF+L ++  +  LIG    + +++ D      
Sbjct: 877  SYIHPLTILSTLPSAGVGALLALYVTGGEFSLISLLGLFLLIGVVKKNAILMID--LALQ 934

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                   S  + I ++    L   + T++AA +  LP+ +    G  +     + +  G+
Sbjct: 935  LERHQGFSPEESIRRACLLRLRPILMTTLAAILGALPLLLSQAEGAEMRQPLGLTIIGGL 994

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            V +   +++    + L++   R +  R
Sbjct: 995  VFSQILTLYTTPVVYLYLDRLRHRFNR 1021


>gi|311103776|ref|YP_003976629.1| multidrug resistance protein [Achromobacter xylosoxidans A8]
 gi|310758465|gb|ADP13914.1| multidrug resistance protein MdtC 1 [Achromobacter xylosoxidans A8]
          Length = 1037

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/563 (11%), Positives = 157/563 (27%), Gaps = 38/563 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+L           +   P                     L    
Sbjct: 10  RPVATTLLSLAVVLAGMLS-----FFLLPVAPLPQVDIPTI---------SVSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S  Q   +ITL F  SR     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGSIAGVTEMTSSSSQGSTRITLQFDLSRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    + N     +    + +++   +        +           ++   +   +
Sbjct: 116 RSLLPTSLRSNPTYHKSNPSDAPIMT-LALTSDTLSQGQLYDIASTIVAQKLSQVDGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +     P  L     +  ++                              
Sbjct: 175 VTVGGSSLPAVRVTVLPGALANRGVSLDQLRATLAN--------------------ANAN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V  +  +     A+      +    +                 +   +  +     
Sbjct: 215 RPKGVLENDRYHWQIMASDQLSRAEQYRPLIVAWKDGAPVRVSDVARVEDSVEDLYQTGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +A  +    ++       +L+A         V +    +   S    
Sbjct: 275 YNDRKAILMIVRRQADANIIEAVDAVRAQLPILQALMPADAHMTVAQDRTPSIRASLHEA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+ + +   +  ++   ++ +++I T  ++ L G TL   S+  +++
Sbjct: 335 ELTLIIAVGLVVLVVLLFLRRWRAAIIPSVAVPVSLIGTFCIMYLSGFTLNTISLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  S   +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIMRHVERGMSPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+  +I++S+  ++++   M   ++R +  +      L+R+        
Sbjct: 455 VVGRLFREFAVTLSAAIIVSLVVSLTLTPMMCARLLRQEAPEEKPPGRLARWSERGFESM 514

Query: 540 IQFMRARFWGVGISILFSICSIC 562
           +   R             +  + 
Sbjct: 515 LDGYRRSLRWALTHSRLMMLILA 537



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 81/219 (36%), Gaps = 6/219 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +VR Q       A   V   +      +   + +   +   P I   L    +  +I  
Sbjct: 283 MIVRRQADANIIEAVDAVRAQLPILQALMPADAHMTVAQDRTPSIRASLHEAELTLIIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + +L+ +    +W  A+     + + +  T     L G   N  ++ A++   G+ V+D
Sbjct: 343 GLVVLVVLLFLRRWRAAIIPSVAVPVSLIGTFCIMYLSGFTLNTISLMALIVATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +VV + +   M+     +S      +   E     +  S++     +P+ + GG V   
Sbjct: 403 AIVVLENI---MRHVERGMSPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGGVVGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              FA+ ++  I+V+   S+ +   +   +    A   +
Sbjct: 460 FREFAVTLSAAIIVSLVVSLTLTPMMCARLLRQEAPEEK 498



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 99/286 (34%), Gaps = 11/286 (3%)

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLG-VLANRPVDLSVVRSNLESLQIGDISFQ 609
              S          L  + +  G+D K    +  +     +  +  R  L +    + +  
Sbjct: 734  SFSQRQVSVMYGPLNQYHVVLGVDPKFAQDIESLRQVEVITAAGARVPLSAFTRLENANA 793

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                +   L               + +        +  +    +    G + +   +++ 
Sbjct: 794  PLSVQHQGLFVADTISFSLAPGVSLGQATSAIDAAVARIGLPSDQIQAGFQGTAAALQQT 853

Query: 670  I----VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            +      ++ + + M I + I ++ +   L  ++TL       L    L   +F L A+ 
Sbjct: 854  LAQQPWLILAALVTMYIVLGILYESFVHPLTILSTLPSAGLGALLALLLVRYDFTLIALI 913

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V  LIG    + +++ D         T  +S RD I ++        + T+MAA    L
Sbjct: 914  GVFLLIGIVKKNAIMMVDFALD--AERTQGMSPRDAIFQACLTRFRPIMMTTMAAIFGAL 971

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            P+ +    G  +     I +  G+V++   +++    + L++  +R
Sbjct: 972  PLVLATGAGVEMRQPLGITIVGGLVLSQILTLYTTPVVYLYLDRFR 1017


>gi|303328165|ref|ZP_07358604.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Desulfovibrio sp. 3_1_syn3]
 gi|302861991|gb|EFL84926.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Desulfovibrio sp. 3_1_syn3]
          Length = 1088

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 64/516 (12%), Positives = 141/516 (27%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G++           +   P       +             +   
Sbjct: 39  RRPVATTLLTIAIALAGMVA-----FGLLPVAPLPEVDFPVVV---------VRARMPGA 84

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S     + + L F   R  +  A  V   +  
Sbjct: 85  SPETMAATVATPLERALGRIAGVTEMTSSSSLGSSNVILQFDLDRDIDGAARDVQGAINA 144

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L   P              I++     D +     +           +I       
Sbjct: 145 ARSTLPTMPSNPSYRKVNPSGAPIMILSITSDVLTRA--QLYDAASTVLAQKISQIPGVG 202

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E  P  L +   +   +       N      M              
Sbjct: 203 EVTVGGGALPAVRVEAIPDALNRAGVSMEDVRKSLAAANAFLPKGMLE------------ 250

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G +     AN   +  +    +   +   +         +      V +  
Sbjct: 251 --------NGENFWLVGANDQLQKAEDYKPLIVAQKDGKTIRLSDVARVEDSSQDVRNMA 302

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V         I       +   T++    +   LR+         +          S   
Sbjct: 303 VANGKPAILLIVFRSPGANIIETVDRVKAMIPQLRSWLPESADLELRMDRSLTIRASLRE 362

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + +  +  GLV++V F+ +   +   +   +  +++I T  ++ L G +L   S+  + 
Sbjct: 363 VEKSLMLAMGLVVLVTFLFLRNARATSIPAVAAPVSLIATFGVMYLCGYSLDNLSLMALT 422

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I       +S   +   G      T+   +I+ +     + F G
Sbjct: 423 VSTGFVVDDAIVVLENIVRRLEMGESPLRAALRGAREVGFTVVSISISLVAVFTPILFMG 482

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R F++ +  ++L+SM  +++    M   +
Sbjct: 483 GIVGRLFREFSVVLTTAVLVSMLVSLTTTPMMCAKL 518



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 63/153 (41%), Gaps = 8/153 (5%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + +  + ++ ++++R     ++ A+   +  +  T G   L G   +  ++ A+    
Sbjct: 367 LMLAMGLVVLVTFLFLRNARATSIPAVAAPV-SLIATFGVMYLCGYSLDNLSLMALTVST 425

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +   ++      S      +   E     V  S++      P+   G
Sbjct: 426 GFVVDDAIVVLENI---VRRLEMGESPLRAALRGAREVGFTVVSISISLVAVFTPILFMG 482

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPIL 820
           G V      F++ +   ++V+   S+    P++
Sbjct: 483 GIVGRLFREFSVVLTTAVLVSMLVSL-TTTPMM 514


>gi|332982240|ref|YP_004463681.1| acriflavin resistance protein [Mahella australiensis 50-1 BON]
 gi|332699918|gb|AEE96859.1| acriflavin resistance protein [Mahella australiensis 50-1 BON]
          Length = 1051

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 63/531 (11%), Positives = 153/531 (28%), Gaps = 40/531 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++ ++I  +G++      L        P A                       
Sbjct: 9   KRPVMTWMIIAIILVLGVVSLSRLGLDLLPNINLPIAA--------------VTASYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    + +   +           +  + I L F      +  A  +   +  
Sbjct: 55  GPEEIETMVTKPLESVLGTVSNVNSVRSISTEGSSIIILEFNQGTDMDFAALDMREKVDL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L       +++      + ++              +    +     ++I   E   
Sbjct: 115 IKGMLPSGVTNPMVLKLDPTMLPVMQISVASKDGNLSRAQ--AVVEDTINNRIERIEGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     ++     P +L     +  ++S                            
Sbjct: 173 SVSITGGRQREISITVQPEKLATYGLSITQISNLLKAE--------------------NL 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +            + K+   +  ++               ++      +    
Sbjct: 213 NMPGGTVVRNDKQLVVRTMGEFKSIDDIKALTIPTPAGGTVKLAEIADVADTFKEINQYN 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            ++  +     +        LR     +++             S + 
Sbjct: 273 KINGKESIGISVQKESTANTVQVADDVNAELEKLRQELPNMEIIP-VLDQSQFIKMSINN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L +IVL + +   +  LV   SI ++VI T  L+   G TL L S+ G+ 
Sbjct: 332 VANNAIIGAILAVIVLLIFLRNVRSSLVIALSIPISVIATFVLVYFSGMTLNLISMGGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           LG+G+ VD++I+V E I    ++ Q+   +   G       I  S +T +   + + F  
Sbjct: 392 LGVGMMVDNSIVVLENIYRHRQEGQTRIKAASDGAGEVAMAITGSTLTTVAVFLPIIFVQ 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
              G   +  A+T+  S+L S+  A++IV  +   ++  +         + 
Sbjct: 452 SLAGEIFKELALTVTFSLLASLVVAVTIVPMLASRLVTIEDEGKPKRRTVW 502



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 83/250 (33%), Gaps = 10/250 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +   A   V L+ +    ++ +  +   +    E   +   +    ++V     +    
Sbjct: 244 TIPTPAGGTVKLAEIADVADTFKEINQYNKINGKESIGISVQKESTANTVQVADDVNAEL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           +K+ + +P   I         I   +       +I + +A+++ +        +L    +
Sbjct: 304 EKLRQELPNMEIIPVLDQSQFIKMSINNVANNAIIGAILAVIVLLIFLRNVRSSLVIALS 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T       G+  NL ++  +   +G  V++ +VV + +    +      +   
Sbjct: 364 IPISVIATFVLVYFSGMTLNLISMGGLALGVGMMVDNSIVVLENI---YRHRQEGQTRIK 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                  E       +++      LP+       G +    A+     +  +  +S+ +A
Sbjct: 421 AASDGAGEVAMAITGSTLTTVAVFLPIIFVQSLAGEIFKELALT----VTFSLLASLVVA 476

Query: 817 APILLFIYDW 826
             I+  +   
Sbjct: 477 VTIVPMLASR 486



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 84/224 (37%), Gaps = 13/224 (5%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI----V 671
            N     +    +     R L  V   I   +    + +   V      +++        +
Sbjct: 817  NRQDLRRTISVNVNISDRALGDVTADIQAKINAYRLPSGYAVSYSGQSQMLNDAFGDLGL 876

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTL 729
             +I++ I + + +  +F+ +      +  + L       G F L G   ++ A   V+ L
Sbjct: 877  ALILAVILVYMIMAAQFESFIHPFDIMFAVPLAFGGAVFGLF-LTGKALSVPAYIGVIML 935

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
             G  VN+ +V+ D      +L     S  + + K+    L   + T++   + ++P+A+ 
Sbjct: 936  TGIVVNNAIVLID---YTNQLRDRGYSCEEALIKAGPTRLRPILMTTLTTVLGLVPLALG 992

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G  +    AI + FG+ ++   ++ I   I      +  ++
Sbjct: 993  IGEGAEMEAPMAITVIFGLGLSTIITLIIVPVIYSLFDRFSRRH 1036


>gi|159043469|ref|YP_001532263.1| acriflavin resistance protein [Dinoroseobacter shibae DFL 12]
 gi|157911229|gb|ABV92662.1| acriflavin resistance protein [Dinoroseobacter shibae DFL 12]
          Length = 1054

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 75/560 (13%), Positives = 163/560 (29%), Gaps = 35/560 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++    M    G++      L +  +   P       +                  
Sbjct: 10  RPIAVIAAVIMAILFGIIA-----LSRIPIQLAPDVRKPVVV---------IETNWPGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E    L    I     +    +ITL FA           V+  L  V
Sbjct: 56  PAEVEREIINPQEEALRGLDGLDIMTSRSQSGSGEITLEFAPGTDMSQTLLLVSNRLDRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                   + +L  +  +      +   +              +     D+I   E    
Sbjct: 116 GDYPAEASEPSLDTSGDDDSPIAWVIVTDAGTAQRPLPTYGDFMEDVVKDRIERIEGVSA 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  +L    DP RL     T  ++       N S           R     +  
Sbjct: 176 VNVFGGVSRELQIVVDPRRLALFGLTVPEVVARLRSENISLSAGDVEEGKRRYIVRAEGA 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++    + G+ L    +                     R        +            
Sbjct: 236 LDTVEAVGGVVLRSEAS----------------SGTLGRVLVRDVAEVQFDYGEPTARLR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGIL--AAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                            +   T+E    +         +                 G+ +
Sbjct: 280 FKGESGLAFNIVRDRGANVIETMEEVRRVLGELQEGPVAAQGLSLEQVYDETIYIEGAIA 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           +      I   L  +VL + +   +  LV   +I ++++ T   ++  G TL + S+AGI
Sbjct: 340 LVTQNIWIGGALAALVLLIFLRSPRATLVVSLAIPVSIVATFVAMAATGRTLNVVSLAGI 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +G+ VD+ I+V E I     + +S   +  +G  + +  I  S +T ++  V +   
Sbjct: 400 AFAVGMIVDAAIVVLENIYRLREQGKSRSEAAYLGARQVWGAILVSALTTVLVFVPILIM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R  A+ + +S+L+S+  A++++ A+   +++  +  ++ +  +  F      
Sbjct: 460 ELEAGQLFRDIAVAISVSVLLSLVVAVTVIPALAKRLLKDGQQTTLPLWGIDHFARGFKA 519

Query: 538 IAIQFMRARFWGVGISILFS 557
             + ++R       + IL  
Sbjct: 520 AVMWYVRMTVRFRALGILMV 539



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 68/217 (31%), Gaps = 12/217 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR   E              +    +               +E V++ + E+        
Sbjct: 261 VRDVAEVQFDYGEPTARLRFKGESGLAFNIVRDRGANVIETMEEVRRVLGELQEGPVAAQ 320

Query: 654 TEIVGPKISRELIRKGIVGV------IISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +       +  +G + +      I  A+A L+ +         L     + + I  T
Sbjct: 321 GLSLEQVYDETIYIEGAIALVTQNIWIGGALAALVLLIFLRSPRATLVVSLAIPVSIVAT 380

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               A  G   N+ ++A +   +G  V+  +VV + +    +L     S  +       +
Sbjct: 381 FVAMAATGRTLNVVSLAGIAFAVGMIVDAAIVVLENI---YRLREQGKSRSEAAYLGARQ 437

Query: 768 TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             G  + +++   +  +P+ +     G +    A+ +
Sbjct: 438 VWGAILVSALTTVLVFVPILIMELEAGQLFRDIAVAI 474



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 88/250 (35%), Gaps = 18/250 (7%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                G   +   +   V +S +   + +    +I  ++        VR         A  
Sbjct: 780  TQDVGSYPVVTPSGDIVPVSALADVIVTAGPTEIRHRDRLRTVTLEVRPSDALPLEAAVE 839

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             +   V   +        I+ T         +      + ++++ + + + + I F+ + 
Sbjct: 840  LLQTEVVAVLEGQGVPPGIRLTVSGTADQLSQTWEAIQINLVVALVIVFLVMAILFESFV 899

Query: 692  FALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYD----R 743
              L  + ++ +     +G  AL         ++  +   + L+G  VN+ +++       
Sbjct: 900  LPLVILISVPVAAAGGVGGLALLNTFQTQPLDMLTLLGFIILVGIVVNNAILIVHQSLYH 959

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
            +R+        +S  D I+++    +     +++ + + +LP+ V+   G  +       
Sbjct: 960  LREE------GMSPVDAIEEATRNRIRPIFMSTLTSIMGMLPLVVFPGEGSELYRGLGAV 1013

Query: 801  MAFGIVVAAS 810
            +  G+ ++A 
Sbjct: 1014 VVGGLSMSAF 1023



 Score = 39.3 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 52/509 (10%), Positives = 133/509 (26%), Gaps = 27/509 (5%)

Query: 5    PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
             +  +   M+  IG   A+   +    L+  P         L +   G       +D  +
Sbjct: 530  RFRALGILMVGLIGGTAAVATVVFLPRLEYLPEGNRNLVFGLIIPPPG-----YNLDTTE 584

Query: 65   FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS----FADSRFKE--NIADKVTLF 118
             +   ++  +  +            +          +    F  +   +   +A+ + L 
Sbjct: 585  TIAERIERAARPMWEAAPALETPEGTPTVENFFFVATPGNSFVGATALDGPRVAELIPLL 644

Query: 119  LQGVNSKLNV--DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
               + ++        +  L          +    +   +    +  +          +  
Sbjct: 645  SGPIFAEPGTFGFMTQPSLFGRGVGGGRTIELNVSGQDL-EQILGVAGRAAGLVAGLLPR 703

Query: 177  SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            SE    R      L        P RL          +    +        +        +
Sbjct: 704  SEGHQFRPIPGLELGAPEVRLVPDRLALADAGLDAGALAATVDAY--NDGLRVAEITEGA 761

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
            D    +++    +S         ++   T    +               T          
Sbjct: 762  DRLDLVLKGDTSLSAGFRTQDVGSYPVVTPSGDIVPVSALADVIVTAGPTE-------IR 814

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              D        +  +              E   +L        + + ++   ++      
Sbjct: 815  HRDRLRTVTLEVRPSDALPLEAAVELLQTEVVAVLEGQGVPPGIRLTVSGTADQLSQTWE 874

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                       IV  ++ I+    VL     +    +    V     L +     L + +
Sbjct: 875  AIQINLVVALVIVFLVMAILFESFVLPLVILISVPVAAAGGVGGLALLNTFQTQPLDMLT 934

Query: 417  IAGIVLGIGLAVDSNILVNER-IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            + G ++ +G+ V++ IL+  + +     +  S   +++         IF S +T+++  +
Sbjct: 935  LLGFIILVGIVVNNAILIVHQSLYHLREEGMSPVDAIEEATRNRIRPIFMSTLTSIMGML 994

Query: 476  VLFFF---GGGAVRGFAITMGLSILISMF 501
             L  F   G    RG    +   + +S F
Sbjct: 995  PLVVFPGEGSELYRGLGAVVVGGLSMSAF 1023


>gi|326334701|ref|ZP_08200908.1| HAE1 efflux family protein [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325693151|gb|EGD35083.1| HAE1 efflux family protein [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 1052

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 63/665 (9%), Positives = 161/665 (24%), Gaps = 51/665 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKKEG-- 85
              + ++P   P               + +           + +     L   +      
Sbjct: 29  SLPISQYPEIAPPT-------------VQVSASYGGANAETVLKAVVIPLEEQINGVENM 75

Query: 86  --IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
             I   +    +  IT+ F      +N A  V   +   N+ L  + K+  +        
Sbjct: 76  DYITSSASNSGRASITVYFKHGTNADNAAVMVQNRVSYANAILPAEVKQAGVTVEKRTSG 135

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
           +++      +      +     +    I  +                  +    DP +L+
Sbjct: 136 NLMFLSFFSENPELDDVFLQNYLSINVIPALKRINGVGDADVFGAKTYSMRVWLDPQKLQ 195

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
                  +++      +        G       +          ++S             
Sbjct: 196 AYKLNPTEVTAAISAQSLEAAAGTLGQNSGGSYEYVIKYKGKYNQVS------------- 242

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +    +     G R         +                       S     + + 
Sbjct: 243 ---EYENVVIKALDGGRVLRLKDVAKVELDALTFSSFAESKGRPAVSMGISQTPGANAHE 299

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            ++        +           +          + S    T      LV +V+++ +  
Sbjct: 300 VVQNIDKYLKSIEKTLPEGITYSINFNVNTFLDAAISKVVSTLLEAFLLVFLVVYVFLQD 359

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR-EEN 442
            +  L+   ++ ++++ T   L+L G ++ + ++  +VL IG+ VD  I+V E +  +  
Sbjct: 360 FRSTLIPAIAVPVSIVGTFFFLNLFGYSINMLTLFALVLAIGIVVDDAIVVVEAVHAKME 419

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILIS 499
           + ++    +     +     I    +      V + F  G      + F IT+ ++I+IS
Sbjct: 420 QTHEKAKPATISAMNEITGAIISITLVMAAVFVPVTFISGTTGVFYKQFGITLIVAIIIS 479

Query: 500 MFTAISIVRAMMIFI-------------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
              A+++   +                    K     +I   +                 
Sbjct: 480 AINALTLSPVLCSLFLKPHGDKEYEKKSWIGKFFHKFNIAFNTATLKYGQTFTFFLRHKW 539

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              V  +I                   + +G + + V       +    + L        
Sbjct: 540 ITLVLFAIAGGGIYYANKNLQSGFVPSEDQGFVMMNVELIPGASMERTANVLREASKTLS 599

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                                S        +   +     P  +IQ            + 
Sbjct: 600 DIPGVANFTYITGNGMLSGSGSNNGMGFFTLKPFEERAKHPDQSIQAIIGKAFASVAHIK 659

Query: 667 RKGIV 671
               +
Sbjct: 660 DARFL 664



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/399 (9%), Positives = 111/399 (27%), Gaps = 19/399 (4%)

Query: 447  SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
                S+     +A++++        +        G G   G ++ +       +      
Sbjct: 639  HPDQSIQAIIGKAFASVAHIKDARFLFFQPPSVAGFGISNGVSLVLLNKSGDEISQVSKT 698

Query: 507  VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
             +  M  +++  +++ +  +  + +      I ++        V   +      I   + 
Sbjct: 699  TQQFMDALMKRPEIQYVQTSFNTNYPQYQMDINVERAMQSGISVSSILSTLQNYIGGFYA 758

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                        +   +  +R    S+    + +          F               
Sbjct: 759  TDFTLYGKQYRVMVQSLPESRKDINSLNGLFVRAGNGEMAPISEFVTLNRVFGPQSLSRY 818

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV----------GVIIS 676
            +      +        +    +  ++         +  +   G+            +I  
Sbjct: 819  NLFTSVSISANSNPGYSTGDAVKAVEEVAAQTLNSNYGIDYTGLTREEQNAGTQTIIIFM 878

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y  +      +   L  + +L   I        LFG+E N+    +++ LIG  
Sbjct: 879  LSLIFTYFILSAQYESYLLPLSVLMSLPFGIFGAFLGQWLFGLENNIYFQISLIMLIGLL 938

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ +     ++      S       +    L   + TS A  + ++P+      G
Sbjct: 939  AKNAILIVEFA---VQRRRHGESLSKAAINAAMARLRPILMTSFAFIVGLMPLVFATGVG 995

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             S   S A   A G ++     + +   + +     + +
Sbjct: 996  SSGNRSVATGAAAGQLIGTFFGLVVIPVLFVIFQHLQER 1034



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 89/238 (37%), Gaps = 7/238 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              ++       +   Q    ++    + ++   K I + +P     
Sbjct: 262 DVAKVELDALTFSSFAESKGRPAVSMGISQTPGANAHEVVQNIDKYLKSIEKTLPEGITY 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           +            I K +  ++ + + + + +++    +   L     + + I  T  F 
Sbjct: 322 SINFNVNTFLDAAISKVVSTLLEAFLLVFLVVYVFLQDFRSTLIPAIAVPVSIVGTFFFL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   N+  + A++  IG  V+D +VV + +   M+          +   ++NE  G 
Sbjct: 382 NLFGYSINMLTLFALVLAIGIVVDDAIVVVEAVHAKMEQTHEKAKPATI--SAMNEITGA 439

Query: 772 SVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +  ++      +P+  + G + +    F I +   I+++A +++   +P+L  ++  
Sbjct: 440 IISITLVMAAVFVPVTFISGTTGVFYKQFGITLIVAIIISAINAL-TLSPVLCSLFLK 496


>gi|192360050|ref|YP_001980896.1| RND transporter, Hydrophobe/Amphiphile Efflux family [Cellvibrio
           japonicus Ueda107]
 gi|190686215|gb|ACE83893.1| RND transporter, Hydrophobe/Amphiphile Efflux family [Cellvibrio
           japonicus Ueda107]
          Length = 1027

 Score =  147 bits (369), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 67/609 (11%), Positives = 164/609 (26%), Gaps = 24/609 (3%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D +   +    +     +        +     + ITL F           +V   L 
Sbjct: 54  ASPDVMARTITAPLERSLGQIPGVKQMSSTSSTGASIITLQFLLEIDLGVAEQEVQAALN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             ++ L  D     +        + +++   +        E    +  +   ++      
Sbjct: 114 TASNLLPGDLPTPPVYRKVNPADAPIMT-LAVTSGSLPLPEVYDLVNTRMAQKLAQLPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      L  + +P+ L     +  ++    V  N ++    F   +        
Sbjct: 173 GMVTLAGGQRPALRIKVNPNALANTQLSMEQVRNTIVTANTNQPKGSFDGTYRS------ 226

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                             AN   ++     ++                 +          
Sbjct: 227 --------------TMLDANDQIRSLDEYRNLIVSWRDGSPLRLGDVATVENGAEDRFLA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +     +    L   L A         +      +   S  
Sbjct: 273 AWANEQPAVLINIQRQPGANVIEVADNIQALLPKLTATMPASVSIAILSDRTHSIRASIR 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +        LV+ V  + +      ++   ++ L++I T A L  L  ++   ++  +
Sbjct: 333 DVQKELIFAIFLVVAVTLVFLRSVPATIIPSLAVPLSLIGTFATLYFLDFSINNLTLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I++ E I     + ++   +   G      T+    I+ +   + L F 
Sbjct: 393 TIATGFVVDDAIVMLENIARHREQGETPLNAALKGAGEIGFTLVSLTISLIAVLIPLLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   + FAIT+ ++I IS+  ++++   M   +++   M            +    
Sbjct: 453 GDLVGRLFQEFAITLAVAIGISLLVSLTLTPMMCARMLKTAPMHDDSKPDFMERVIRRYG 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             +  +          +L +I     L+          +    +  +   P D S     
Sbjct: 513 TLLDKVLEHQTAAMAVMLGTIALTAGLYLLVPKGFFPIQDSGAIQAITEAPQDTSFAAMT 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
               Q+ ++  Q+ D E             ++   R+L  +K         S +      
Sbjct: 573 ERQQQLAELILQDPDVEGLSSFIGVDGSNITLNSGRLLINLKPHHERSSHASDVIRRLQE 632

Query: 658 GPKISRELI 666
               +  + 
Sbjct: 633 RIAPTSGIT 641



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/269 (10%), Positives = 79/269 (29%), Gaps = 13/269 (4%)

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            S +              N  + ++ G  L +     V+       L +      +    
Sbjct: 225 RSTMLDANDQIRSLDEYRNLIVSWRDGSPLRLGDVATVENGAEDRFLAAWANEQPAVLIN 284

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
              +     ++          ++   +   ++  +      +       + +EL      
Sbjct: 285 IQRQPGANVIEVADNIQALLPKLTATMPASVSIAILSDRTHSIRASIRDVQKEL------ 338

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    + + + +         +     + L +  T           N   + A+    G
Sbjct: 339 -IFAIFLVVAVTLVFLRSVPATIIPSLAVPLSLIGTFATLYFLDFSINNLTLMALTIATG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
           + V+D +V+ + +    +      +  +   K   E     V  +++    ++P+   G 
Sbjct: 398 FVVDDAIVMLENI---ARHREQGETPLNAALKGAGEIGFTLVSLTISLIAVLIPLLFMGD 454

Query: 791 --GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G +   FAI +A  I ++   S+ +  
Sbjct: 455 LVGRLFQEFAITLAVAIGISLLVSLTLTP 483



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 69/170 (40%), Gaps = 6/170 (3%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            +   +  ++ + + M I + + ++ +   +  ++TL       L    L G   +L AV 
Sbjct: 849  LSNTLWLILAAIVTMYIVLGVLYESFIHPVTILSTLPSATVGALLALLLVGQPLDLIAVI 908

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ LIG    + +++ D      +     ++ R  I ++        + T++AA    +
Sbjct: 909  GVVLLIGLVKKNGIMMVDFALDAQRNL--GMNPRQAIHRAALMRFRPILMTTLAALFGAI 966

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+ +    G  +     + M  G++V+   ++F    + LF   W  +  
Sbjct: 967  PLMLASGSGAELRQPLGLVMVGGLLVSQVLTLFTTPVVYLFFDRWVTRRR 1016


>gi|317407415|gb|EFV87377.1| acriflavin resistance protein [Achromobacter xylosoxidans C54]
          Length = 1025

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/605 (11%), Positives = 159/605 (26%), Gaps = 43/605 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                  L   +   G+L           +   P                   +      
Sbjct: 10  RPVATSFLMLALLLSGILA-----WRMLPVAALPQVDYPI-----------IQVTTPYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D     +    +     +        S     + ITL F+          +V   + 
Sbjct: 54  ASPDVTARAVTAPLERRFGQIPGLKQMSSSSGSGISVITLQFSLDVSLGVAEQEVQAAIS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S L  D     +          +L+   +        +    +  +   ++      
Sbjct: 114 ASGSLLPSDLPTPPVYRKVNPADVPILT-LAVTSDSLPLPQVYDLVDTRMTQRLAQLSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      +  + +P  L       + +       N+++    F            
Sbjct: 173 GMVSLAGGQRPAVRVQANPMALAARGLQLSDLQEAIAKANSNQPKGSFDGPVRS------ 226

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                             AN   ++ +   D+                 +          
Sbjct: 227 --------------VIMDANDQLQSAQEYRDLIVAWRNGAPVRLGEVATVEDGAEDRYLA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +   +     +    L   L A         V      +   S  
Sbjct: 273 AWVDRQPAVLVNIQRQPGANVIAVADQVKALLPQLTASLPAAVQVRVLTDRTESIRASVR 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +   A   GLV++V F+ +      L+   ++ L++I T  ++ L G +    ++  +
Sbjct: 333 GVQWELAFAVGLVVLVTFLFLRNLPATLIPSLAVPLSLIGTFGVMHLAGFSTNNLTLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +G G  VD  I++ E I     +  S   +   G  +   T+    ++ +   + L F 
Sbjct: 393 TIGAGFVVDDAIVMLENIARYREQGHSPMAAALKGAGQIGFTLVSLTLSLIAVLIPLLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R FAIT+ ++ILIS+  ++++   M   +      +                
Sbjct: 453 EDVVGRLFREFAITLAVAILISLAVSLTLTPMMCARL-LPPHAERPPGLLDRLQARYAGW 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           + +     R   + I    ++ ++  L      + +   G +Q    + +      +   
Sbjct: 512 LDVTLRHQRLTLLAILATVALTALLYLAVPKGFFPVQDGGVLQGVTQSAQSTSFEAMSRR 571

Query: 598 LESLQ 602
            ++L 
Sbjct: 572 QQALA 576



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           +   +  + ++ ++++R      L     + L +  T G   L G   N   + A+    
Sbjct: 338 LAFAVGLVVLVTFLFLR-NLPATLIPSLAVPLSLIGTFGVMHLAGFSTNNLTLMALTIGA 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +      S      K   +     V  +++    ++P+    
Sbjct: 397 GFVVDDAIVMLENI---ARYREQGHSPMAAALKGAGQIGFTLVSLTLSLIAVLIPLLFME 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FAI +A  I+++ + S+ +  
Sbjct: 454 DVVGRLFREFAITLAVAILISLAVSLTLTP 483



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 71/171 (41%), Gaps = 6/171 (3%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            +   +  ++ + + M + + + ++     +  ++TL       L    L G   +L AV 
Sbjct: 846  LSNTLWLMLAAVVTMYLVLGMLYESAIHPVTILSTLPSATVGALLALLLTGRPLDLIAVI 905

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ LIG    + +++ D   +     +  ++ R+ I ++    L   + T++AA    L
Sbjct: 906  GIILLIGLVKKNGIMMVDFALE--AERSRGLAPREAIREAALLRLRPILMTTLAALFGAL 963

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+ +    G  +       M  G++V+   ++F    + LF +   A   +
Sbjct: 964  PLMLATGSGAELRQPLGWVMVGGLLVSQVLTLFTTPAVYLFFHRLGAGRRK 1014


>gi|307946698|ref|ZP_07662033.1| acriflavin resistance protein [Roseibium sp. TrichSKD4]
 gi|307770362|gb|EFO29588.1| acriflavin resistance protein [Roseibium sp. TrichSKD4]
          Length = 1344

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 90/719 (12%), Positives = 201/719 (27%), Gaps = 53/719 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R           +  + L+ A          +  P         + +  +G       +
Sbjct: 9   LRRPK-----TVFVLMLALIAAGVMTYISIPKESDPDIDVP-VFYVSIAQQG-------I 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             +D     ++    ELR  L           +    I L F  S  K+     V   + 
Sbjct: 56  SPEDAERLLVRPMETELR-GLDGLKEITAIASEGHAGIVLEFDISFNKDEALADVRDKVD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  D ++  +  T    + ++    + +       + +    R+  D I   ++ 
Sbjct: 115 QAKGELPEDAEEPTISETNFALVPVMWVSLSGNVPERTLYQHA----RRLKDLIEAVDTV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      L    D  +L     T A++       N             R +    
Sbjct: 171 RSADLSGHREEMLEVLIDTQKLEAYSITQAELFNTLTANNRLVPAGFLDGGTGRFNVKVP 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            LVE   +I                      +   + G          +I +        
Sbjct: 231 GLVETAADI--------------------YSLPIKQSGEGVVTLSDIADIRRTFKDASAY 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + +   +          +               +   +         
Sbjct: 271 TRVNGEPAIALQITKRIGTNIIENNNAVRAVVENASKDWPDSINVNIMLDSSSNIFEILG 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +      LV+I++   +      L+   +I  + ++   +L  +G T+ +  + G+
Sbjct: 331 SLQSSILTAIFLVMILVLAALGLR-SALLVGLAIPTSFMVGFLILGGIGYTVNIMVMFGL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +GL VD  I++ E    + +       +        +  I  S  T L+A + +  +
Sbjct: 390 VLTVGLLVDGAIVMTEYADRKVQDGMEDREAYIRAAKLMFWPIVSSTATTLVAFLPMLLW 449

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G A      +    ++I + TA  +   + I +       +      +  +L+    A 
Sbjct: 450 PGVAGEFM--SYLPIMVIIVLTASLVTAMVFIPVTGGVMALTTKWVQRNATWLLALVTAA 507

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL--SVVRSNL 598
                      +   FSI  +       L  GI     ++  V   +             
Sbjct: 508 AVAGITAPATALPETFSIIGLLATVAAFLIAGIGSFFVLRPFVRWRQRAAARKIEEEEAR 567

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            +      +F +F  E   +V   +     + +T  L       T  +  + I       
Sbjct: 568 PAKLYKRATFVSFASEILAVVLAVFFGLSLLEKTPALLSNTSTGTLNLINAAIGQNGKQL 627

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFALFG 715
           P I  ++    ++ + ++A    + +            +  L+  +   LG    +LFG
Sbjct: 628 PLIVGDIFTYFLIALTVAATIWALVVLF--------KPVVWLLETVFAWLGNKIASLFG 678



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 81/233 (34%), Gaps = 10/233 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMVKKKITEIVPL 648
           D++ +R   +                    R+      ++ A   V+E   K   + + +
Sbjct: 256 DIADIRRTFKDASAYTRVNGEPAIALQITKRIGTNIIENNNAVRAVVENASKDWPDSINV 315

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           + + ++     +I   L    +  + +  I +L  + +R      L   T+ ++      
Sbjct: 316 NIMLDSSSNIFEILGSLQSSILTAIFLVMILVLAALGLRSALLVGLAIPTSFMVGFLILG 375

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G     G   N+  +  ++  +G  V+  +V+ +      +     +  R+   ++    
Sbjct: 376 GI----GYTVNIMVMFGLVLTVGLLVDGAIVMTE---YADRKVQDGMEDREAYIRAAKLM 428

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAI--PMAFGIVVAASSSIFIAAPI 819
               V ++    ++ LPM +W G      +    M   ++ A+  +  +  P+
Sbjct: 429 FWPIVSSTATTLVAFLPMLLWPGVAGEFMSYLPIMVIIVLTASLVTAMVFIPV 481



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 82/231 (35%), Gaps = 26/231 (11%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                 DG  + +V+    P         ++ ++  +        +        +  +E  
Sbjct: 997  EIVRRDGLYSMMVKASVDPTSGATPDDKVKELQAWLDTQTWPENVFLQFRGADEDQKESG 1056

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVA 724
               I  ++ S   M + +  ++  +Y     ++T++L +   L    L G +F++     
Sbjct: 1057 EFLIKAMVASLFLMFLILLTQYNSFYQTFLTLSTVVLSVFGVLLGMLLTGQKFSIIMTGT 1116

Query: 725  AVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
             V+ L G  VN+ +V+ D   R R         +   D I K+ ++ L   + T++    
Sbjct: 1117 GVVALAGIVVNNAIVLIDTYNRFR------GDGLEPLDAILKTASQRLRPILLTTVTTIA 1170

Query: 782  SVLPMA------------VWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
             ++PMA             +GG         +  +  G+  +   ++ +  
Sbjct: 1171 GLIPMATKINFDFFNQVTAYGGITAVWWVQLSTAVIAGLAFSTFLTLIVVP 1221


>gi|172040618|ref|YP_001800332.1| preprotein translocase subunit SecD [Corynebacterium urealyticum
           DSM 7109]
 gi|171851922|emb|CAQ04898.1| protein-export membrane protein SecD [Corynebacterium urealyticum
           DSM 7109]
          Length = 613

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 110/555 (19%), Positives = 196/555 (35%), Gaps = 54/555 (9%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             +L   +  + +                P         LG+DL+GG+ + L    +   
Sbjct: 19  RSLLVFFVIFLAVYGL---VFTTGDKSATP--------KLGIDLQGGTRVTLAPQGERPT 67

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK---VTLFLQGVN 123
              LQ     L S +   G+    +    + + ++                  L  +  +
Sbjct: 68  ADQLQQARRILESRVNGMGVSGAEVVTDGDNLVITVP-GEDASEARALGKTSQLLFRPNS 126

Query: 124 SKLNVDPKKNLLVTTTEKEIS------IVLSQNNIDQVISHAIEQSM--EIIRQRIDQIG 175
                  K   +                  +Q  ++ ++    EQ+      +  +    
Sbjct: 127 QPQPTTAKFAEVYQDMANRWVEAGILKKQPTQEKMNDLLKAMKEQNAPGLPDKLTVTAKE 186

Query: 176 ISESTIQRLGSHRILIQLPGE--QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
            +E         R   Q+        +         A +         S           
Sbjct: 187 PAEPKNSVEEQKRRDKQVQILLKDRQAENADTQSAAAGLLDCSGPDPLSGADDPAKPLVT 246

Query: 234 RDSDGNQYLVEDKV-----------EISGIHLNG-------ATANFDPKTHKPVVDISFD 275
               G   L    V            ++G  ++          A               D
Sbjct: 247 CSPQGPMVLGPAPVLIGDENKDKPRRLTGDMIDTNSTITGGFDAQSAQMAITFRFKTGKD 306

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQISGNFTIETAGILAAM 334
             G   ++++ +D + + +A+ LD +V++AP I  A  P   +QI+G FT + A  LA  
Sbjct: 307 TPGGETWYKLGQDMMNQQVAITLDSQVISAPQIQGATPPGEVSQITGQFTEKEAQDLANN 366

Query: 335 LRAGSLPIKLNIVEER------NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
           LR G+LP+               +   +G  S+  G  A + GLVL  L+ +  Y   GL
Sbjct: 367 LRYGALPLSFVGENGEPGGTATTISPTMGEASLRAGLIAGLVGLVLASLYALWYYRGLGL 426

Query: 389 VADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +A  S+  +V +   LL LL    G +L L  IAG+++GIG   DS ++  ERI++E   
Sbjct: 427 IAIVSLVASVAMVFGLLVLLGRWIGYSLDLAGIAGLIIGIGTTADSFVVYFERIKDEILG 486

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
             +   ++   + RA  TI   N  +LIA V+L+F   G V+GFA T+GL+ ++ +  A 
Sbjct: 487 GSTFRSAVPRAWDRARGTIVTGNFVSLIAAVILYFLAIGDVKGFAFTLGLTTVVDVVVAF 546

Query: 505 SIVRAMMIFIIRYKK 519
            +   + I + R   
Sbjct: 547 LLTAPLTIMLSRKPF 561



 Score = 97.8 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 81/268 (30%), Gaps = 32/268 (11%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
             G     +  +       +  + + +    I      GE + +     +         +
Sbjct: 308 PGGETWYKLGQDMMNQQVAITLDSQVISAPQIQGATPPGEVSQITGQFTEKEAQDLANNL 367

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
                                 + P +    +R G++  ++  +   +Y    ++    L
Sbjct: 368 RYGALPLSFVGENGEPGGTATTISPTMGEASLRAGLIAGLVGLVLASLYALWYYR-GLGL 426

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN----------------DKV 738
            AI +L+  +    G   L G              IGYS++                  V
Sbjct: 427 IAIVSLVASVAMVFGLLVLLGR------------WIGYSLDLAGIAGLIIGIGTTADSFV 474

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           V ++R++  +       +FR  + ++ +   G  V  +  + I+ + +       +  FA
Sbjct: 475 VYFERIKDEILG---GSTFRSAVPRAWDRARGTIVTGNFVSLIAAVILYFLAIGDVKGFA 531

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDW 826
             +    VV    +  + AP+ + +   
Sbjct: 532 FTLGLTTVVDVVVAFLLTAPLTIMLSRK 559


>gi|78185560|ref|YP_377994.1| RND family multidrug efflux transporter [Synechococcus sp. CC9902]
 gi|78169854|gb|ABB26951.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           CC9902]
          Length = 1043

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/512 (12%), Positives = 145/512 (28%), Gaps = 30/512 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   + V+   +I   GL   +        L+  P   P                    
Sbjct: 9   LRRPVFTVVCSLLILLAGLTSMV-----GLGLEDLPQLAPTRV---------SVSASFPA 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D V   +    ++  + L+       + RQ    I+L F+     E  A KV   + 
Sbjct: 55  ASPDVVEQSVTAVLEQQLNGLEGVESISSTSRQGGASISLRFSAG-DPELNAIKVQNEVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L     +  L         +++   +           +  + +   + +  +   
Sbjct: 114 LATRRLPTAVGRQGLQVRRSSNDLLMILGFSHPTDQYVPTFLTGWLDQSLRESLLTTPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      +      DP RL Q   T   ++      N        G           
Sbjct: 174 GDVVVFGGSELSFRIWLDPQRLEQAKLTVTDVTQALAEQNVLAAIGSIGASPAPTGQLIS 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             VE +  +                    + +   + G     +     +    +     
Sbjct: 234 LPVEAEGRLRSQDDFEN------------LVLRRFDNGGLLRLKDVGRVVLGQKSYGRTA 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +      +       L +   P     +          +  
Sbjct: 282 TNLQGERSVAVGLYQRDGANALQVSRSIKDQLQQLESNFPPGVELSLIVDVADTVQDNLD 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
              GT      LVL+VL + +   +  ++   ++ + ++ +L ++ L G+ L    + G+
Sbjct: 342 RTLGTLRDAVILVLLVLVLFLGRWRLAMIPGIAVPVALVGSLIVVRLSGSELNSLILFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  G+ VD  I+V E I     + ++   + +   +     +  +++      + +   
Sbjct: 402 VLATGIVVDDAIVVTEDIASRIERGEAPQQAAENAMAELAGAVVATSLVLAAVFIPVLLI 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRA 509
               G   +  A+ +  +IL S   A+S    
Sbjct: 462 PGSVGRLYQPIALAISGAILFSTVNALSFTPM 493



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +W  A+     + + +  +L    L G E N   +  ++   G  V+D +VV + +    
Sbjct: 364 RWRLAMIPGIAVPVALVGSLIVVRLSGSELNSLILFGLVLATGIVVDDAIVVTEDI---A 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                  + +   + ++ E  G  V TS+      +P+ +  GSV       A+ ++  I
Sbjct: 421 SRIERGEAPQQAAENAMAELAGAVVATSLVLAAVFIPVLLIPGSVGRLYQPIALAISGAI 480

Query: 806 VVAASSSIFIAA 817
           + +  +++    
Sbjct: 481 LFSTVNALSFTP 492



 Score = 41.6 bits (95), Expect = 0.57,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 50/141 (35%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ + +   L    L G+  ++      L LI  +  + +++ +      
Sbjct: 896  SFIDPFIILLTVPIALMGALIGLKLRGLPLDVYGQMGFLVLISLAAKNGILIVEFAN--- 952

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +  +  +   D I  +    +   V T++ +    LP+      G +   S    +  G+
Sbjct: 953  QRLSQGLKLGDAILSAAVNRMRPIVLTAVTSLAGFLPLLFASGTGSASRISIGTVVFSGL 1012

Query: 806  VVAASSSIFIAAPILLFIYDW 826
            + +   S+F    + L +   
Sbjct: 1013 LTSTLLSLFAIPALYLHLKKR 1033


>gi|297155803|gb|ADI05515.1| preprotein translocase subunit SecD [Streptomyces bingchenggensis
           BCW-1]
          Length = 601

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 103/559 (18%), Positives = 216/559 (38%), Gaps = 58/559 (10%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD----- 61
             ++  ++  + L   +                   +  LG+DL GG+   LE       
Sbjct: 19  RALVAILVAIVALTAGMF-------------ISGHTKPRLGIDLAGGTSFTLEAKNQPGK 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQ 120
            +   +  +    + +   +   G+    ++   +K I ++       +    +V    Q
Sbjct: 66  PNAINSDNMNTAVNIIERRVNGLGVSEAEVQTQGDKHIIVNIPKGMDAKQARTQVGTTAQ 125

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID-------- 172
                +           T     +   +  + D+  + +   +                 
Sbjct: 126 LYFRPVVTYTDGKKTKPTASPTPTATGTGKSNDKGKASSTPTATGATGTPSASSASSSSQ 185

Query: 173 --------QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK 224
                   +   + S  +   +          +     +        ++        +  
Sbjct: 186 GRAVSEGLKADKTPSASESPSASESPKASETPKATETPKGESSKADDLTKQLADLECTTP 245

Query: 225 GF------------MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD-PKTHKPVVD 271
                                 D DG++  +    ++ G  +  A + +D       +V+
Sbjct: 246 ADRAKAREKAAGAKPSDSVVACDRDGSRKFILGPSQVEGTDVKNAASVYDSQGGGGWIVE 305

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVL-----DGRVLTAPVINQAIPSGKAQISG-NFTI 325
           ++F   G +++ +VT +   +           DG V + P ++++I  G+AQISG +F  
Sbjct: 306 LNFTGSGGKKWAKVTGELAKQQPPQNQFAIVLDGEVYSDPRVDESIVGGRAQISGPDFDQ 365

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +    LA +L  G+LP+  +I +E  V A LG + +  G  A   GL L+V++++V Y  
Sbjct: 366 KNTSDLANVLSYGALPLSFDIADETTVSAALGGEQLEAGLIAGAIGLALVVVYLVVYYRG 425

Query: 386 WGLVADFSIFLNVILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
             L+A  S+ ++ +L+  ++ LLG      L LP++ G ++ IG+  DS I+  ERIR+E
Sbjct: 426 LALIALASLAVSAVLSYTIMVLLGPGIGFALNLPAVCGAIVAIGITADSFIVYFERIRDE 485

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R+ +++  +++ G+ RA  TI  S+  + +A  VL+    G V+GFA T+GL+ L+ + 
Sbjct: 486 IREGRTLRPAVERGWPRARRTILVSDFVSFLAAAVLYIVTVGKVQGFAFTLGLTTLLDVV 545

Query: 502 TAISIVRAMMIFIIRYKKM 520
                 + +M  + R K  
Sbjct: 546 VVFLFTKPLMTILARRKFF 564



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 17/134 (12%), Positives = 50/134 (37%), Gaps = 7/134 (5%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           + A+ +  + +    G     G   NL AV   +  IG + +  +V ++R+R  ++    
Sbjct: 436 VSAVLSYTIMVLLGPGI----GFALNLPAVCGAIVAIGITADSFIVYFERIRDEIRE--- 488

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             + R  +++         + +   +F++   + +     +  FA  +    ++      
Sbjct: 489 GRTLRPAVERGWPRARRTILVSDFVSFLAAAVLYIVTVGKVQGFAFTLGLTTLLDVVVVF 548

Query: 814 FIAAPILLFIYDWR 827
               P++  +   +
Sbjct: 549 LFTKPLMTILARRK 562


>gi|150002837|ref|YP_001297581.1| putative cation efflux transporter [Bacteroides vulgatus ATCC 8482]
 gi|294778113|ref|ZP_06743544.1| heavy metal efflux pump, CzcA family [Bacteroides vulgatus PC510]
 gi|149931261|gb|ABR37959.1| putative cation efflux transporter [Bacteroides vulgatus ATCC 8482]
 gi|294447972|gb|EFG16541.1| heavy metal efflux pump, CzcA family [Bacteroides vulgatus PC510]
          Length = 1056

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 77/678 (11%), Positives = 191/678 (28%), Gaps = 48/678 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  +   GL       L +  +D +P       +              +  
Sbjct: 9   KKPIMTSLCFLAVAIFGLFS-----LSKLPVDLYPDIDTNTIM---------VMTSYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +           +  + ITL F      + + + V   L  
Sbjct: 55  SASDIENNVTRPLENTLNSVSNLKHITSKSSENISVITLEFEYGYDIDVLTNDVRDKLDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L  +    ++   +   I I+L     ++      +         ++ +       
Sbjct: 115 VSSELPDEVNTPIIFKFSTDMIPILLLSVQAEESQPALYKILD---DNVVNPLARVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     ++    DP++L     T   +S      N +  G  F V     S   + 
Sbjct: 172 TVSIAGAPKREVNIYCDPNKLEAYDLTIETISSIVGAENKNTPGGTFDVGSNTYSLRVEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E+  I +                            +      +   +       
Sbjct: 232 EFKDPKEMENIVVGI--------------------RNGASVYLRDVATVVDSVEERAQET 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +              L+          V        L +   
Sbjct: 272 YNNGVQGAMIVVQKQSGANSVNISRKVMEQLPKLQKSLPSDVKLGVIVNTSDNILNTIDS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGI 420
              T       V++V+F+ +   +  ++   +I +++I +   L++    +L + S++ +
Sbjct: 332 LTETIMYAILFVVLVVFVFLGRWRATVIICITIPMSLIASFIYLAITDGGSLNIISLSCL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD  I+V E +     +      +   G +    ++  S +T +     L   
Sbjct: 392 SIAIGNVVDDAIVVLENVTTHIERGSEPKQAAIHGTNEVAISVIASTLTMIAVFFPLTMV 451

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI--- 534
            G +    R     M + + IS  +A+S    M   ++R +K +S       +       
Sbjct: 452 SGMSGVLFRQLGWMMCVIMTISTISALSFTPMMCAQMLRLQKKQSKWFVTFYKPIERALD 511

Query: 535 ---PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ-LGVLANRPVD 590
                         R     I+  F    + L+   G+            + V    P+ 
Sbjct: 512 GLDNWYQKRLNWAVRHRKTIIAGCFGFFLLSLICAKGIGTEFFPSQDNSRISVQLQLPIG 571

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R+   + ++ +   + ++G          Q         + +     I+  + L  
Sbjct: 572 ARVERAQALAQELTERWLKKYEGVMRICNYTVGQADADNTWASIQDNGSHIISFNINLYN 631

Query: 651 IQNTEIVGPKISRELIRK 668
                +   ++   +   
Sbjct: 632 PDQRSVTLAEVCDGMRED 649



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 79/241 (32%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++ ++            ++  +V +      +   + V           +P        
Sbjct: 794  KDIGTVVERSAPPTIERKDRERIVTVSAVISGAPLGSVVAAGESIIDKMDLPGGISIQVA 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G + V+I  I + I +  +F+   +    + ++    +  L      
Sbjct: 854  GSYEDQQDSFSDLGTLAVLI-IILVFIVMAAQFESLTYPFIIMFSIPFAFSGVLMALYGT 912

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ ++   + LIG  V + +V+ D +          +S    +  S    L   + 
Sbjct: 913  GTTLNVMSLLGGIMLIGIVVKNGIVLIDYI---TLCRERGMSVIHSVVVSGRSRLRPVLM 969

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++   + ++PMA+ GG    +     + +  G+ V+   ++ +   +         K  
Sbjct: 970  TTLTTILGMVPMAIGGGEGSEMWQPLGVSVIGGLTVSTVLTLILVPVLYCSFAGTGIKRN 1029

Query: 832  R 832
            R
Sbjct: 1030 R 1030



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 98/281 (34%), Gaps = 8/281 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +   L   G          I +G+     V L  V + ++S++       N   +  
Sbjct: 220 VGSNTYSLRVEGEFKDPKEMENIVVGIRNGASVYLRDVATVVDSVEERAQETYNNGVQGA 279

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +V  +    +SV  +R +     K+ + +P        +         I      ++ +
Sbjct: 280 MIVVQKQSGANSVNISRKVMEQLPKLQKSLPSDVKLGVIVNTSDNILNTIDSLTETIMYA 339

Query: 677 AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSV 734
            + +++ +++   +W   +    T+ + +  +  + A+  G   N+ +++ +   IG  V
Sbjct: 340 ILFVVLVVFVFLGRWRATVIICITIPMSLIASFIYLAITDGGSLNIISLSCLSIAIGNVV 399

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--G 791
           +D +VV + +             +       NE     + +++       P+  V G  G
Sbjct: 400 DDAIVVLENV---TTHIERGSEPKQAAIHGTNEVAISVIASTLTMIAVFFPLTMVSGMSG 456

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +       M   + ++  S++     +   +   + K ++
Sbjct: 457 VLFRQLGWMMCVIMTISTISALSFTPMMCAQMLRLQKKQSK 497


>gi|168242205|ref|ZP_02667137.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448100|ref|YP_002046180.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|226700781|sp|B4T9U2|MDTC_SALHS RecName: Full=Multidrug resistance protein MdtC; AltName:
           Full=Multidrug transporter MdtC
 gi|194406404|gb|ACF66623.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205338356|gb|EDZ25120.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 1026

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 172/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRRANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++      +    ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQLRKRGVGRLLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 64/166 (38%), Gaps = 7/166 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              G ++  FA+ ++  I ++   S+ +   +  ++        ++
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQL 499



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 92/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++    T++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPPTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSDGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017


>gi|49473804|ref|YP_031846.1| acriflavin resistance protein d [Bartonella quintana str. Toulouse]
 gi|49239307|emb|CAF25634.1| Acriflavin resistance protein d [Bartonella quintana str. Toulouse]
          Length = 1041

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/517 (12%), Positives = 149/517 (28%), Gaps = 45/517 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV-LEV 60
           R   +  +L +MI   G    L        +   P                 + +     
Sbjct: 25  RRPVFTFVLNAMIVIAGFAAWL-----NVDVRELPDVDTPVT----------TIVTAFAG 69

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + ++  +    ++  S +        +    ++++ L F         A  +   L 
Sbjct: 70  ASAETIDREVTKIIEDAVSRVSGVKTISSTSSFGRSRVELHFNVGVDLNVAASDIRDALS 129

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  +    L++       +++        +     + +M +  Q +D +   +  
Sbjct: 130 RIAYSLPKNADSPLIIKADSNAAAMMYLVVTSSTMNID--DLTMVVDDQIVDALSAVDGV 187

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                          + D +RL     T A +S                           
Sbjct: 188 GDVQVDSARTKIFQIDVDQTRLASYGLTVADISRVLADMTTDVPVGSLRNSKQALIVRAT 247

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++       + L                                  ++     V    
Sbjct: 248 ARLKTPEAFEQVVLKPH------------------------VRLGDVAHVTLSPDVETVI 283

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            KAQ +     +    +   L++         +   +     G+  
Sbjct: 284 LRINGKTGIGLGIVRKAQSNTLNISQGIRTVVDHLKSVIPSSVHISIISDDALFIKGALH 343

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    I    V++++F+ +   +  L+   SI + +I T+A + L+G +L + +  G+
Sbjct: 344 EVEVALVIAVLSVILIIFLFLRDFRITLIPALSIPVALIGTVAAIYLVGFSLNILTFLGL 403

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  GL VD  I+V E I            +  +G    +  +  + +T +   V + F 
Sbjct: 404 VLATGLVVDDAIVVLENIVRWRNMGLGPRAAAVLGTREVFFAVLATTLTLVAVFVPISFL 463

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G      R F   + +SIL+S   A+++   +    
Sbjct: 464 PGQVGGLFREFGFVLAISILLSSIVALTLCPMLASRF 500



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 87/252 (34%), Gaps = 11/252 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+    V L  V     S  +  +  +        L  ++    +++  ++ +  V   
Sbjct: 258 QVVLKPHVRLGDVAHVTLSPDVETVILRINGKTGIGLGIVRKAQSNTLNISQGIRTVVDH 317

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTL 700
           +  ++P S   +         +  + +  V ++I+    +LI       +   L    ++
Sbjct: 318 LKSVIPSSVHISIISDDALFIKGALHEVEVALVIAVLSVILIIFLFLRDFRITLIPALSI 377

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L G   N+     ++   G  V+D +VV + +   ++     +  R  
Sbjct: 378 PVALIGTVAAIYLVGFSLNILTFLGLVLATGLVVDDAIVVLENI---VRWRNMGLGPRAA 434

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
                 E     + T++      +P++   G V      F   +A  I+    SSI +A 
Sbjct: 435 AVLGTREVFFAVLATTLTLVAVFVPISFLPGQVGGLFREFGFVLAISIL---LSSI-VAL 490

Query: 818 PILLFIYDWRAK 829
            +   +     K
Sbjct: 491 TLCPMLASRFLK 502



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 95/250 (38%), Gaps = 12/250 (4%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            ++ V LSV+    E      +  +           L        A   V ++    ++E 
Sbjct: 789  DQYVPLSVIAYLHEKAIAPQLKREKRMSAIVLSANLAPGVVLGSAYQTVQKIAAPLLSEG 848

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
              +  +     +G   S  +I  G+     + + +L+ +  +F+ +      + T+ L +
Sbjct: 849  NYIVPLGEAATLGETSSNFMIVFGM-----AFVIILLVLAAQFESFVSGFIIMATVPLAV 903

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
               +    L G+  N+ +   ++ L+G    + +++ +      +L     S R+ I+K+
Sbjct: 904  GCAIISMLLSGVSLNIYSQIGLILLVGVMAKNGILIVEFA---DQLRDQGKSVREAIEKA 960

Query: 765  INETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             N  L     T + A +  +P+ +    G     +    +  G+ +A   ++++   + L
Sbjct: 961  ANIRLRPVCMTMICAILGGIPLVLAKGAGAEARIALGWVIVGGLGLATIFTLYVTPVVYL 1020

Query: 822  FIYDWRAKNA 831
            F+  +    +
Sbjct: 1021 FLGRFVRPKS 1030


>gi|91977607|ref|YP_570266.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
 gi|91684063|gb|ABE40365.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
          Length = 1012

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 71/520 (13%), Positives = 150/520 (28%), Gaps = 39/520 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V++ ++I   GL            + ++P       I                 
Sbjct: 9   RRPILSVVVSALILLAGLASVF-----SLPVRQYPRLESATII---------VDTGFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     +  +             Q +++I      +   +    +V   +Q 
Sbjct: 55  TQDVMQGFVTTPIAQAIATASGIEYLTSISTQGRSQIKAKLVLNANADRALTEVLAKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L       ++   T+   ++       D +     + +    R     +       
Sbjct: 115 VKYRLPAGVNDPVITKVTDGASAVQYISFASDSL--SVPQITDFASRVAQPLLTSVPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +    + +    DP R+     T   ++      N                     
Sbjct: 173 AVDLTGGQTLAMRIWIDPVRIAARGLTAGDVAAALRANNVQAAPGQLKD----------- 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G  +   TA  + K       +                 +           
Sbjct: 222 ---------GDTVTNITAQTELKDVDAFRTMVVKTGTDGIVRLGDIAEVEVGGQNTNAIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +           S     +    +  A  L   ++  + P                +   
Sbjct: 273 LADGKRAVIIGISPTPDGNPLEIVRAANTLIPQIQRVAPPGLEVKSTFDVATFVNAAIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +      A +V+IV+F+ +   +  ++   +I L++I T AL+ + G +L L ++  +V
Sbjct: 333 VQHALLEAALIVVIVIFLFLGSLRAVVIPIVTIPLSLIGTAALMLMFGFSLNLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +  +G       +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIEEGLPPIQAALVGAREIVRPVLTMMITLAAVYAPIGLMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
              G   R FA+T+  S+++S   A+++   M   ++  K
Sbjct: 453 GLTGALFREFALTLAGSVVLSSMVALTLSPMMSARLLNAK 492



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 81/243 (33%), Gaps = 7/243 (2%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + +    +  V L  +       Q  +            +       G+ +   R    +
Sbjct: 243 MVVKTGTDGIVRLGDIAEVEVGGQNTNAISLADGKRAVIIGISPTPDGNPLEIVRAANTL 302

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAI 697
             +I  + P      +           I +    ++  + I +++           +  I
Sbjct: 303 IPQIQRVAPPGLEVKSTFDVATFVNAAIEEVQHALLEAALIVVIVIFLFLGSLRAVVIPI 362

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ L +  T     +FG   NL  + A++  IG  V+D +VV + +    +     +  
Sbjct: 363 VTIPLSLIGTAALMLMFGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIEEGLPP 419

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                    E +   +   +       P+ + G   G++   FA+ +A  +V+++  ++ 
Sbjct: 420 IQAALVGAREIVRPVLTMMITLAAVYAPIGLMGGLTGALFREFALTLAGSVVLSSMVALT 479

Query: 815 IAA 817
           ++ 
Sbjct: 480 LSP 482



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 69/197 (35%), Gaps = 10/197 (5%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
            + ++ ++ +           +           L     V    + I + + +  +F+   
Sbjct: 813  QAVKAMEAQKLAPGTTIDWLSDSRQYVTEGDRLT----VSFGFALIVIFLVLAAQFESLR 868

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + T+ L I+  L    L     N+     ++TLIG      +++      N    
Sbjct: 869  DPLVILVTVPLAISGALLPLYLGYATLNIYTQIGLVTLIGLISKHGILMVS--FANDIQR 926

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               ++  + I +S    +   + T+ A    ++P+      G +   S  I +  G++V 
Sbjct: 927  AEGVARAEAILRSAKVRMRPILMTTAAMVAGLVPLIFASGAGAASRFSIGIVVVTGMLVG 986

Query: 809  ASSSIFIAAPILLFIYD 825
               ++FI   I   I D
Sbjct: 987  TMFTLFILPTIYTLIAD 1003


>gi|282850290|ref|ZP_06259669.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Veillonella parvula ATCC 17745]
 gi|282579783|gb|EFB85187.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Veillonella parvula ATCC 17745]
          Length = 1060

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 88/758 (11%), Positives = 206/758 (27%), Gaps = 65/758 (8%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +GL+  +        + R+P   P              +          VN  +    
Sbjct: 20  TLVGLISMM-----NLPVARYPQISPPTVQ---------VNTAYTGATAQVVNDTVASVI 65

Query: 75  DELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           +     ++       +     +  +T+ F      +         +Q   ++L  + +  
Sbjct: 66  ETQIVGVQDMDYMTSNSSSNGSYSLTVQFNQGTDADMDTVNTQNRVQAALAQLPSEVQAV 125

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            + TT       ++   +       A           +D I   +              +
Sbjct: 126 GVTTTKSSGDMALIFSLSSPNGTYDATFLKNYGTNYMMDTIKSIKGVGSVQEFGS-DYSM 184

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP+++++L  T ++++      N        G          QY ++    +    
Sbjct: 185 RIWLDPAKMQKLGVTISEVTAAIKGQNLQAAAGTVGKNPTNGEQAFQYPIKIDGRL---- 240

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                      T +   +I+      +         I                 +     
Sbjct: 241 ----------VTPEQFGNIAIKSTNGKVLHLKDISRIQIGAEGYDFIAKSAHKEVAGFAI 290

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
           S +   +   TI     +         P     V   N      S +  + T      LV
Sbjct: 291 SLQNDANALETIANVKKVLDEQSKSFPPDMQYNVVVDNTKFVSASINEVEHTFVEALLLV 350

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           L+V+++ +   +  ++   ++ ++++ T     LL  ++   ++  +VL IGL VD  I+
Sbjct: 351 LVVVYVFLQSWRSTIIPMIAVPVSLLGTFGAFILLDFSINTLTLFAMVLAIGLVVDDAIV 410

Query: 434 VNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFA 489
           V E +  E          +           +           V + F G   G   + FA
Sbjct: 411 VVEAVEYELKYNGLPPKEAAIKAMENVQGPVIGIAFVLTAVFVPVAFMGGITGILYKQFA 470

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +T+ +S++IS   A+ +  A+   +++    K  +     +       +           
Sbjct: 471 LTIAVSVVISAIIALVLTPALCATMLKPHISKEREDWLHRQLNKFNAALERFSNWYGIQL 530

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
             +S   S+  I LL   G    +            +    +  +     +     ++  
Sbjct: 531 ARLSHRLSLTVIALLVFAGGTALVFHFLPTSFVPAEDSGYYMIAINEPPGATSERTMATL 590

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                         +P D      V  +    +      S+                   
Sbjct: 591 EKIASFLEEKNDPEKPKDEQLFQEVFTVAGFDLLGGGQKSSAGVIFATMSDWKYRTT--- 647

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
                 +A ++   +   F +                  G      I  N  ++  + T 
Sbjct: 648 ------AATSINAMVGQTFGF---------------AAQGVPEATVIAMNPPSIPGLGTT 686

Query: 730 IGYSV-------NDKVVVYDRMRKNMKLYTTSISFRDL 760
            G+S+       +   V+ DR  + +     S + + +
Sbjct: 687 GGFSMYIINKAGDSPQVMADRTNEFIAEARKSPAIQSI 724



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 14/201 (6%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYF 692
            + +               T     +   EL       +I+    + +++    +   W  
Sbjct: 847  DAINALKEAAAKTLPAGYTYDWAGQSREELKAGSQTMLILGLGLVFVFLILAALYESWKV 906

Query: 693  ALGAITTLILDITKTLGFFALFGIEF------NLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                + ++   +        L           ++     +LTL+G +  + +++ +  + 
Sbjct: 907  PFAVLFSVPSGMIGASLVPFLLNFTGRYFLANDIYMQIGLLTLVGLAAKNAILIIEYAK- 965

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
             +++    ++  D   ++    L   + TS A  + VLP+AV    G     S  I +  
Sbjct: 966  -IRVDERGMNVVDAAIEAAKIRLRPILMTSFAFILGVLPLAVSSGAGSGARTSMGITVVA 1024

Query: 804  GIVVAASSSIFIAAPILLFIY 824
            G+  A    IFI   + + I 
Sbjct: 1025 GMTTATLFGIFIIPMLFIIIE 1045


>gi|331007048|ref|ZP_08330279.1| AcrB/AcrD/AcrF family protein [gamma proteobacterium IMCC1989]
 gi|330419133|gb|EGG93568.1| AcrB/AcrD/AcrF family protein [gamma proteobacterium IMCC1989]
          Length = 1029

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/627 (8%), Positives = 170/627 (27%), Gaps = 39/627 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL       +    + ++P +                       
Sbjct: 9   RRPVLAIVVSLVIIIAGL-----QAISSLSVRQYPRSDNAVVT---------IQTAYIGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    +   +  +         +   + I +    +        ++   +  
Sbjct: 55  SAELVRGFVTTPIERAVAGAEGIDYIESFSQLGVSTINVRLELNYDPIKALSEINTKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  + +  ++   +           +    I  + + +  ++R    ++   +   
Sbjct: 115 VRNDLPAEAEVPVINVESADSKFASAY-LSFTSDILDSNQITDFLVRVVQPRLSALDGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P RL     +  ++       N            +        
Sbjct: 174 RADVLGARNFAMRIWLKPERLAAHNVSPTQVRQALAANNFLSALGQTNGSLV-------- 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       ++ +         +    +                ++           
Sbjct: 226 -----------QVSLSANTDLQTVGEFEELVLRRSDNGAVIRLKDVADVQLGSQSYAPEV 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +    I+        ++          +          S + 
Sbjct: 275 RFSGKTATFMGIWPLPNSNSLDVIKLVREEMEAIQTTLPSGMDARIAYDATEYIETSITE 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  L+   +I +++I  + L+ L+G +L L ++  +V
Sbjct: 335 VRWTLIETLLIVILVIFLFLGSLRTVLIPIIAIPISLIGAIFLMQLMGFSLNLLTLLAVV 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E ++    + Q+   +   G       +  +    +   + +   G
Sbjct: 395 LSVGLVVDDAIVIVENVQRHISEGQNKLDAALQGARELVGPVIATTAVLVAVYLPVGLQG 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID--INPLSRFFLIPD 536
              G   + F  T+  +++IS   A+++   M   I++    +             +   
Sbjct: 455 GLTGSLFKEFTFTLAGAVIISSIVALTLSPMMSANILKEGDDEKGFALKVHRLFDRVKHR 514

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I     R   + +S+    C +C+         +       +     +      +  
Sbjct: 515 YSGILDATLRARPLVLSVWLIACLLCIPLFTMSASELAPTEDQGVIFGIVQDSPNLNLDQ 574

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQY 623
            +      +    + +        +  
Sbjct: 575 AVFYADEAERILSSPEETDFVFQIIAP 601



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 73/188 (38%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             +E ++  +   +      +          E+    I  ++I  + + +++        
Sbjct: 303 EEMEAIQTTLPSGMDARIAYDATEYIETSITEVRWTLIETLLIVILVIFLFLG---SLRT 359

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  I  + + +   +    L G   NL  + AV+  +G  V+D +V+ + +    +  +
Sbjct: 360 VLIPIIAIPISLIGAIFLMQLMGFSLNLLTLLAVVLSVGLVVDDAIVIVENV---QRHIS 416

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              +  D   +   E +G  + T+       LP+ + G   GS+   F   +A  +++++
Sbjct: 417 EGQNKLDAALQGARELVGPVIATTAVLVAVYLPVGLQGGLTGSLFKEFTFTLAGAVIISS 476

Query: 810 SSSIFIAA 817
             ++ ++ 
Sbjct: 477 IVALTLSP 484



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 59/177 (33%), Gaps = 21/177 (11%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE-------- 717
             K +   +++ + + + +  +F  +   L  I   +         F    +         
Sbjct: 843  NKFLPAFMLAIVLIFLVLAAQFNSFRDPLVIILGSVPLAMFGALIFTFLQMPNPQLAFWT 902

Query: 718  ------FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
                   N+ +   ++TLIG    + ++V +      KL    +     + ++    L  
Sbjct: 903  DGWTTTLNIYSQVGLVTLIGLVAKNGILVVEFAN---KLQEQGMQKLAAVREAAITRLRP 959

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + TS+A      P+      G     S  I +  G+ +    ++F+   I + I  
Sbjct: 960  ILMTSVATVAGHAPLIFVMGAGAEARNSIGIVLVSGMAIGTVFTLFVIPSIYMLIAK 1016


>gi|295396084|ref|ZP_06806267.1| protein-export membrane protein SecD [Brevibacterium mcbrellneri
           ATCC 49030]
 gi|294971025|gb|EFG46917.1| protein-export membrane protein SecD [Brevibacterium mcbrellneri
           ATCC 49030]
          Length = 652

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 128/577 (22%), Positives = 225/577 (38%), Gaps = 79/577 (13%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD--FVNG 68
             ++    L+ A   +   +         P     L LDL GG+ ++LE   +D      
Sbjct: 5   AFIVIIFALVGAGAVWSNAT-------WSP----KLALDLEGGTSIILEPQLEDQQVTRE 53

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNSKLN 127
            LQ     +R  +   G+    +    ++ I ++   +   E   + V    Q    ++ 
Sbjct: 54  QLQQAVAIIRQRVDSTGVSEAEISTQGDRNIVVNLPGNPD-EETRNLVRSSAQLAFRRVA 112

Query: 128 -VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ------------------------ 162
            V     L     E +          ++      E                         
Sbjct: 113 LVGAPTPLDQQQQEDKPQEDTGPKLSEEDQKKLDELLGGQGGQSQPEQGAPQQGQPQEPA 172

Query: 163 -----SMEIIRQRIDQIGISESTIQRLGSH---------RILIQLPGEQDPSRLR----- 203
                ++  + Q        E                      +   + D  R +     
Sbjct: 173 NPGSSNIRPVAQPAPSEEGKEPQQGEQPEQKSEEEPSKLPEDFEPGSQDDVPRFKPEDQQ 232

Query: 204 -----QLLGTTAKMSFHKVLPNNSKKGFMFGVR-FLRDSDGNQYLVEDKVEISGIHLNGA 257
                +LL   AK+   K                   D  G    +   VE++G H+  A
Sbjct: 233 SWMDSKLLEEYAKLDCTKPENRVGGDSGPRDEPMVSCDQTGEAKYILGPVELAGSHVKDA 292

Query: 258 TANFD-----PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL-----DGRVLTAPV 307
           +  F+      +T++  V + FD+ G   F +VT    G            DG VL+APV
Sbjct: 293 SFGFESTSQGTQTNRLAVTMEFDDFGREVFGKVTSAVTGAQPPYNQFAIVLDGLVLSAPV 352

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
              A+  G+AQI+G+F+ E A  LA  L+ G+LPI   +  E+ +   LG+D +  G   
Sbjct: 353 SQSAVTDGRAQITGSFSEEEASTLANQLKNGALPISFKVQSEQQISPTLGADYLKVGLIT 412

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIAGIVLG 423
              GL+L+V++ ++ Y   GLV   S+ +  +LT  LL  +        +L  +AGI++G
Sbjct: 413 GGIGLLLVVVYSLLQYRVLGLVTVSSLVVAGVLTWGLLLFVSWRYGYRLSLAGVAGIIIG 472

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           IG+A DS I+  ER+R+E R  + +  ++++G+ RA  TI+ S    ++A V+LF    G
Sbjct: 473 IGMAADSFIVYFERVRDELRDGRKLLSAVEVGWDRARRTIYASKAVNMLAAVILFILAVG 532

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +VRGFA T+GL++++ +   +     M+  + R +  
Sbjct: 533 SVRGFAFTLGLTVIVDVVIVVLFTHPMLQVLARTRFF 569



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 8/70 (11%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS-MAAFISVLPMAVWGGSV 793
           +  +V ++R+R  ++           ++   +    R++Y S     ++ + + +     
Sbjct: 478 DSFIVYFERVRDELRDGRK---LLSAVEVGWDRA-RRTIYASKAVNMLAAVILFILAVGS 533

Query: 794 IGSFAIPMAF 803
           +  FA  +  
Sbjct: 534 VRGFAFTLGL 543


>gi|226943553|ref|YP_002798626.1| AcrB/AcrD/AcrF family acriflavin resistance protein [Azotobacter
           vinelandii DJ]
 gi|226718480|gb|ACO77651.1| Acriflavin resistance protein, AcrB/AcrD/AcrF family [Azotobacter
           vinelandii DJ]
          Length = 1033

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/599 (12%), Positives = 171/599 (28%), Gaps = 42/599 (7%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +   P       +             L     + +   + M  +     +    
Sbjct: 28  GYRLLPVAPLPQVDFPTIM---------VEASLAGASPETMAATVAMPLERAMGQIAGIT 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +  Q    + + F   R  +  A  V   +    S L    K            + 
Sbjct: 79  EMTSTSSQGSTNVIVQFDLDRDIDGAARDVQAAINAARSLLPSSMKSLPTYRKANPSDAP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +L  + I + +S + E       +   +I   +   +       L  +  +  P  L Q 
Sbjct: 139 ILMLSLISESLS-SGELYDLASSKLQQKIAQVKGVGEVSLRGSALPAVRIDLQPQPLSQY 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +        ++                          + G   +         T
Sbjct: 198 GISLETVRSRIAEATSNLPKGS---------------------LQGERQHWWIDANAQLT 236

Query: 266 HKP-VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
                 D+       +        N+   +  +                + +A  +   T
Sbjct: 237 RAADYRDLPIAYADGKALRLGDVANVYDSVQDLYTAGFHDNRPSVTIGVTRQAGANMLET 296

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           I++   L  +LR         +V          S    + T  I   LV+ V+F+ +   
Sbjct: 297 IDSIKALLPLLRGMLDGQAELVVAIDRSPNIRASLLDTEETLLIAILLVIAVVFVFLRDA 356

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  L+   ++ +++I T A++ LLG +L   S+  +++  G  VD  I+V E I      
Sbjct: 357 RALLIPAATLPISLIGTCAVMYLLGYSLNNLSLMALIIATGFVVDDAIVVLENISRHLEA 416

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
             S   +   G      T+    ++ +   + +   G   G   R FA+T+ +++LISM 
Sbjct: 417 GSSPLRAALRGTREVGFTVLAMTLSLIAVFIPILLMGDIVGRLFREFAVTLSVALLISML 476

Query: 502 TAISIVRAMMIFIIRYKKMKS-------IDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554
            ++++   +   +++     +       I+    +        +       R     + +
Sbjct: 477 VSLTLTPMLCSRLLKAHAGTTDNALYRLIERLLDALAAAYARSLEWVMRHRRLTLASLLL 536

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
             ++            +     G +   + A++      +   L +         +  G
Sbjct: 537 TVAVNLFLFAVVQKGFFPNQDTGMLMGQLRADQNTSFQSLEPRLLAFSELIRQDPDVQG 595



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 77/240 (32%), Gaps = 11/240 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +      ++     +L +    D       G     V  Q           +  ++    
Sbjct: 254 LRLGDVANVYDSVQDLYTAGFHDNRPSVTIG-----VTRQAGANMLETIDSIKALLPLLR 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +   + +       P I   L+      +I   + + +           L    TL +
Sbjct: 309 GMLDGQAELVVAIDRSPNIRASLLDTEETLLIAILLVIAVVFVFLRDARALLIPAATLPI 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     L G   N  ++ A++   G+ V+D +VV + +    +      S      
Sbjct: 369 SLIGTCAVMYLLGYSLNNLSLMALIIATGFVVDDAIVVLENI---SRHLEAGSSPLRAAL 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +   E     +  +++     +P+ + G   G +   FA+ ++  ++++   S+ +   +
Sbjct: 426 RGTREVGFTVLAMTLSLIAVFIPILLMGDIVGRLFREFAVTLSVALLISMLVSLTLTPML 485



 Score = 38.9 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 25/246 (10%), Positives = 75/246 (30%), Gaps = 16/246 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L  ++  + S       +     + +   D V+       + + +  I    ++    
Sbjct: 783  SRLARIESANGSLSVAHQNQMATSTVAFNLADGVSLQAAKAAIDQALVSIGLPGSVHGGL 842

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +    L       ++ +  A+ I + I ++       I + +      +G   L  
Sbjct: 843  QGTAQAYESLAASMPWLILAALAAVYIVLGILYESLIHPLTILSTLPSAG--VGALLLLI 900

Query: 716  IEFNLTAVAAVLTLIGYSV---NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                   V A++ ++        + +++ D     +      ++ R+ I  +        
Sbjct: 901  ATGTQLTVIALIGILLLIGIVKKNAIMLID--FALLAERNQGLAPREAILLACRMRFRPI 958

Query: 773  VYTSMAAFISVLPMAVW----GGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + T      +           GG         + +  G+ ++   +++    + L++  +
Sbjct: 959  MMT---TLAAFFGALPMVLESGGDADLRRPLGLTICGGLALSQLLTLYTTPVVYLYLDRF 1015

Query: 827  RAKNAR 832
                AR
Sbjct: 1016 GRSIAR 1021


>gi|209964732|ref|YP_002297647.1| AcrB [Rhodospirillum centenum SW]
 gi|209958198|gb|ACI98834.1| AcrB [Rhodospirillum centenum SW]
          Length = 1070

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/551 (11%), Positives = 142/551 (25%), Gaps = 42/551 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            +  ++ L+ ++   G+             +  P                   +  E   
Sbjct: 11  RSRMVIALFVLLLVGGV-----GAYATMPKEAAPDINIPIIY---------VSVTYEGIS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            +     L    ++    ++       +  Q    + L F      +   D V   +   
Sbjct: 57  PEDAERLLVRPIEQEVRTIEGVKEMTATAYQGGANVVLEFEAGFDADTALDDVRQKVDLA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L     +  +         +++   + D      +  +    R   D+I      + 
Sbjct: 117 RPELPDGVDEPRVSEVNFSLFPVIVVTLSGDVPERTLLRLA----RDLEDRIEGLSEVLS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    DP  L         +       N             R +     L
Sbjct: 173 VDVSGDREELVEVVIDPMLLESYGLNPNDVITLFSRSNRLVAAGNLDTGAGRFAVKVPGL 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            E                        V+D+     G           + +          
Sbjct: 233 FET--------------------VDDVLDMPIKVSGDSAVRFRDVAEVRRTFRDPTSFAR 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +   TIE      A  +            +          S  
Sbjct: 273 VDGERAIALEVVKRTGENVIDTIEKVRATVAEAQRTWPAAVAVSFSQDQSNEIRMMLSDL 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    LV+IV    +   + GL+   +I  + +  L +L ++G ++    +  +++
Sbjct: 333 TNNLISAILLVMIVCIAAL-GVQAGLLVGVAIPGSFLTGLLVLMVMGLSINNIVLFSLIM 391

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD  I+ NE    +  +  S   +  +   R    I  S  T L A   L F+ G
Sbjct: 392 VVGMLVDGAIITNEYADRKMTEGLSPREAYSLAAQRMAWPIITSTATTLAAFAPLLFWPG 451

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                ++   IT+  ++  S+  A+  +  +        +     +  L+       C  
Sbjct: 452 MVGEFMKFLPITLIATLSASILMALIFIPTLGSVFGHAGQTDPALMKALAASESGDLCTL 511

Query: 540 IQFMRARFWGV 550
             F       +
Sbjct: 512 RGFTGFYVRLL 522



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 90/248 (36%), Gaps = 21/248 (8%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             SN  + +           +   ++ ++      V  +  L  ++  +    P  T+  T
Sbjct: 792  ISNFVTREPHPTVGVINRTDGKRVMEVKADVPPGVLASDKLLELQAWLQANPPDPTVTLT 851

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFAL 713
                 +  RE          ++   + + +  +F  +++   I   +I+     L    L
Sbjct: 852  FKGEDEEQRESSAFLTQAFAVALFLIAVILIAQFNSFYSTALILSAVIMSTVGVLIGLLL 911

Query: 714  FGIEFNL-TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G  F +      V++L G  VN+ +V+ D      +L+ T+ S R+ + ++  + L   
Sbjct: 912  TGQPFGIVMTGIGVISLAGIVVNNNIVLID---TYDRLHRTTPSAREALLRTGAQRLRPV 968

Query: 773  VYTSMAAFISVLPMAV------------WGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
              T++   + ++PM               G         F+  +AFG+  A   ++ I  
Sbjct: 969  FLTTVTTVLGLMPMVFQVNLDFVSREISVGAPSTQWWGGFSTAIAFGLSFATVLTL-IVT 1027

Query: 818  PILLFIYD 825
            P  L + +
Sbjct: 1028 PCALMLRE 1035



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/230 (12%), Positives = 72/230 (31%), Gaps = 7/230 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                R   E  +           +    + L+            +E V+  + E     
Sbjct: 250 SAVRFRDVAEVRRTFRDPTSFARVDGERAIALEVVKRTGENVIDTIEKVRATVAEAQRTW 309

Query: 650 TIQNTEIVGPKISRELI---RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                       S E+          +I + + ++I           L     +      
Sbjct: 310 PAAVAVSFSQDQSNEIRMMLSDLTNNLISAILLVMIVCIAALGVQAGLLVGVAIPGSFLT 369

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L    + G+  N   + +++ ++G  V+  ++  +      +  T  +S R+    +  
Sbjct: 370 GLLVLMVMGLSINNIVLFSLIMVVGMLVDGAIITNE---YADRKMTEGLSPREAYSLA-A 425

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           + +   + TS A  ++     ++   ++G F   +   ++   S+SI +A
Sbjct: 426 QRMAWPIITSTATTLAAFAPLLFWPGMVGEFMKFLPITLIATLSASILMA 475


>gi|193216420|ref|YP_001997619.1| acriflavin resistance protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193089897|gb|ACF15172.1| acriflavin resistance protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 1024

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/612 (10%), Positives = 171/612 (27%), Gaps = 43/612 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +   +    G +      L    +   P    K                    
Sbjct: 9   KRPIMMSMFLIVFALFGSMAYFGMPLDLFPVVNIPYITVKT--------------TYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S + +    +    +  + + + F  ++  +    +V   +  
Sbjct: 55  GPKEIETQITKKIEDAVSSVSEIDQMISYSMEGVSLVMIKFELAKDPDIANQEVKDKVDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    ++      E  I+    +     +   E +    ++  D+        
Sbjct: 115 IVNNLPDDADIPIVQKYNVNEKPILEVVLSGPLTQTELYELAD---KRLKDRFAQIPGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   S     ++    D   + Q       +S      N       F       +     
Sbjct: 172 QVNLSGGQEREVQVILDDRTVFQNTIDLNTLSQILSAQNIDIPAGNFKRGNQEYTVRLSG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             ED  EI+ + +  +      K    V              + T + + + ++   +  
Sbjct: 232 EFEDPKEIADLEVPTSFGMKRIKDIAEV--------------KDTGEEVRQRVSYFNNIE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +P          ++ +     +    +   ++A         +          S   
Sbjct: 278 KAGSPDAVLLSLVKNSEGNSVEIAKDVKKVLPEMQASLPAGTQLEIVTDKSVFVESSVED 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   L  IVL   +   +   +   S+ ++++    ++   G +L + S+ G+ 
Sbjct: 338 TLVNILLGIVLTSIVLLFFLHDLRSTTIVAISMPMSILSAFMIMQASGFSLNMMSLMGLS 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
             +G+ V ++++V E I            +   G +     +  S +T +   + +    
Sbjct: 398 TAVGVLVTNSVVVLENIFRHKEMGNGRVEAASKGTNEVVVAVVASALTNIAVFLPIAQMT 457

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+  + + S+  + ++   +   ++  +  K   I             
Sbjct: 458 SIVGQFFREFALTVTYATIFSLIISFTLTPMLASLLLPEEDKKKHPIGEALEKMFHFWET 517

Query: 539 AIQF---------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
             +           RA        ILF +              +  +G I + +      
Sbjct: 518 LYKRSLEAILQSKWRAVGVIATAIILFILSLPLAGKIGFEFVPLTDEGDIDIELELPEGT 577

Query: 590 DLSVVRSNLESL 601
           +L      L S+
Sbjct: 578 NLEKTAELLSSV 589



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 86/234 (36%), Gaps = 11/234 (4%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                  I  ++      F              + +   + +         T      +  
Sbjct: 795  KEGYSKIMHKDKFKAVEFSASSAPGVPMGNVVSEINAKIAEIDLPSGYKITWGGDAEMMQ 854

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
              + +++R  I+ +I++    ++   I   +   L  + T+ L +    G   + G   N
Sbjct: 855  DTAVDMLRTFIIAIILTY---MLLAAILESFTQPLIILGTVPLAMIGVFGSMYITGKSMN 911

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + ++ +++ L+G  VN+ +++     +   L    +S  D + ++    L   + +++A 
Sbjct: 912  IISMLSIVMLLGIVVNNAILMLSYTNE---LREKGMSIYDALIEACPTKLKPILMSTIAI 968

Query: 780  FISVLPMAV----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             + +LPMA+     G  +     I    G+VV+   ++F+   I   +     K
Sbjct: 969  ILGMLPMAMGFGDAGREIRQPMGIVAIGGLVVSTFLTLFVIPAI-YDLTSREKK 1021



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 79/245 (32%), Gaps = 8/245 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                  + +   +   +    +   L  ++   G+SV   + ++ V  ++   +P  T 
Sbjct: 261 DTGEEVRQRVSYFNNIEKAGSPDAVLLSLVKNSEGNSVEIAKDVKKVLPEMQASLPAGTQ 320

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
                         +   +V +++  +   I +               ++ + I      
Sbjct: 321 LEIVTDKSVFVESSVEDTLVNILLGIVLTSIVLLFFLHDLRSTTIVAISMPMSILSAFMI 380

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   N+ ++  + T +G  V + VVV + +    +         +   K  NE + 
Sbjct: 381 MQASGFSLNMMSLMGLSTAVGVLVTNSVVVLENI---FRHKEMGNGRVEAASKGTNEVVV 437

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V +++      LP+A      G     FA+ + +  + +   S F   P+L  +    
Sbjct: 438 AVVASALTNIAVFLPIAQMTSIVGQFFREFALTVTYATIFSLIIS-FTLTPMLASLLLPE 496

Query: 828 AKNAR 832
               +
Sbjct: 497 EDKKK 501


>gi|255022119|ref|ZP_05294122.1| acriflavin resistance protein [Acidithiobacillus caldus ATCC 51756]
 gi|254968383|gb|EET25942.1| acriflavin resistance protein [Acidithiobacillus caldus ATCC 51756]
          Length = 1037

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/544 (12%), Positives = 164/544 (30%), Gaps = 44/544 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R       L  +I  +GL     +      + ++P+ +                      
Sbjct: 9   RRPVLATALSLVIFLLGL-----HAYTMMTVRQYPALVNTVVTVTTP---------YPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               + GF+     ++ +          +  + Q+ IT+    +    +    +   +Q 
Sbjct: 55  SPSTIQGFITTRLSKVIASAPHIDYMTSNSSEGQSTITVYMDLNTDPSSAVANILAKIQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+++L    ++  +  T      ++      D +     + +  ++R    ++       
Sbjct: 115 VSNQLPAGAQQPTVNVTVGNTTDLMYIAFYSDSLSQQ--QITDYLLRVAQPRLATIPGVG 172

Query: 182 QRLG-----SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           +         +     +    +P +L  L  + A+++      +          + ++++
Sbjct: 173 EAQILPPGAGNGNTYAMRVWLNPQKLAALGVSAAQVATALRNNDFISAVGQTRGKMVQNT 232

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +                       +   ++   + G           +      
Sbjct: 233 IVATTNLN--------------------NVQEFRNLVIKQSGNTLIRLKDVARVELGAQD 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                  +              L     P     +         
Sbjct: 273 YTSYAFFDGKPSAFIGIQESPSANSLTVASKVRAALKELDKSLPPGLHEAIPYDASVFIK 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T  I   +V++V+F+ +   +  ++   +I L+++    ++  +G T+ L +
Sbjct: 333 ASLDEVLLTIGITLAVVVLVIFLTLGSLRAVIIPGVAIPLSIVGAGLVMWGMGFTINLLT 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  IVL IGL VD  I+V E +     + +S F +  M        I   + T +     
Sbjct: 393 LLAIVLAIGLVVDDAIIVVENVHRHIDEGKSPFEAALMTGRELGGAIVVMSTTLIAVFAP 452

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F G   G     FA T+  ++LISM  A+++   +   ++R K+    +     RF  
Sbjct: 453 IAFMGGLTGSLFGEFAFTLVATVLISMIVALTLSPMLSSKVLRPKQEHGFEHFVDQRFDG 512

Query: 534 IPDC 537
           +   
Sbjct: 513 LRRF 516



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 77/231 (33%), Gaps = 7/231 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q              F+   +    +S+     +    K++ + +P    +
Sbjct: 262 DVARVELGAQDYTSYAFFDGKPSAFIGIQESPSANSLTVASKVRAALKELDKSLPPGLHE 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                     +  + + ++ + I+   +++ I++        +     + L I       
Sbjct: 322 AIPYDASVFIKASLDEVLLTIGITLAVVVLVIFLTLGSLRAVIIPGVAIPLSIVGAGLVM 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   NL  + A++  IG  V+D ++V + +    +      S  +    +  E  G 
Sbjct: 382 WGMGFTINLLTLLAIVLAIGLVVDDAIIVVENVH---RHIDEGKSPFEAALMTGRELGGA 438

Query: 772 SVYTSMAAFISVLPMAVWGG--SVIGS-FAIPMAFGIVVAASSSIFIAAPI 819
            V  S        P+A  GG    +   FA  +   ++++   ++ ++  +
Sbjct: 439 IVVMSTTLIAVFAPIAFMGGLTGSLFGEFAFTLVATVLISMIVALTLSPML 489



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 64/149 (42%), Gaps = 6/149 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ + I+  L F +L     N+     ++TLIG      +++      N 
Sbjct: 878  SFTDPLIVLITVPMSISGALIFISLGLASINIYTEVGLITLIGLIAKQGILIVQ--FANQ 935

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +  R+ ++K+ +  L   + T+ A  + VLP+ +    G        + +  G+
Sbjct: 936  IQMDEGLDKREAVEKASSIRLRPILMTTGAMVLGVLPLVLATGPGAVARQQMGLVIFTGL 995

Query: 806  VVAASSSIFIAAPI-LLFIYDWRAKNARI 833
             + A  S+F+   + ++   D RA+ AR+
Sbjct: 996  AIGALFSLFVVPAMYMVLAKDKRAQAARL 1024


>gi|225621211|ref|YP_002722469.1| putative acriflavin resistance protein [Brachyspira hyodysenteriae
           WA1]
 gi|225216031|gb|ACN84765.1| putative acriflavin resistance protein [Brachyspira hyodysenteriae
           WA1]
          Length = 1045

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 82/652 (12%), Positives = 199/652 (30%), Gaps = 45/652 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++   +  +G +      +        P                  +   +  
Sbjct: 10  KRPVTILMVIVSVIILGAVSLSKLSIDFMPSIEVPYVS--------------IYTRYKNA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        + R+  + +T+ F       + ++ +   L+ 
Sbjct: 56  GPEEIEKSVTKIIEGAVATVNNIKEITSTSRENASDVTIEFNWGTDLNDASEDIREALEQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    +K ++   +  +IS++         I+           Q   QI  ++   
Sbjct: 116 VIDLLPDSAEKPIIRKFSTDDISLMEVAVY---GINDQAALYNIADNQIAPQIKQAKGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++  + + +RL+       +++      NN+  G      F R +     
Sbjct: 173 QAEVLGGLKNEIKIDVNLNRLKAYNININEIASVLARDNNNLVGGQANQGFYRYTIRTMG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +I    ++                       +          + +     ++  
Sbjct: 233 EIKSLDDIKNTIISLK---------------KDSVGNSSVVKIQDLAEVYQGYDDDINII 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          S ++  +     +                    +      +   S + 
Sbjct: 278 KINGENSISIAVSKESGANTAEVSKNVIKQLEEY--NFPQGVKYEIMFNTADSINESIAG 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                       +IVL + +   +   +   SI +++I+T  L+  +  TL + S++G+V
Sbjct: 336 VLDAAWQGGLFAIIVLMIYMWNIRTVSIIAISIPISIIVTFTLMYFMKVTLNVISLSGLV 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIG+ VD++I+V E I          + S   G  +    I  S  T +   +   +  
Sbjct: 396 LGIGMMVDNSIVVLENIFYYRHHGYGKYSSAINGAYKVSLAISASTFTTIAVFLPFLYIE 455

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R   IT+ +S++ S+  AI IV      +I  KK+K            I D +
Sbjct: 456 GMVSQIFRDLCITVTVSMIASLLVAILIVPMFGARLITNKKLKLFSKFESLSNKYIHDNM 515

Query: 539 AIQFMR-------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           +  + +        +   +  SI+     I L        G       Q  V    P+  
Sbjct: 516 SNIYNKILNFSIRRKKTVLIPSIILVFSVIFLGAMFIGKEGFPKTDEGQYMVRVTMPIGT 575

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                    + + +   +    +    ++ + + GD      +   +K K  
Sbjct: 576 -KYEQTQSFIGLMENDIREIVKDDLIKIQSRIRKGDEENNANIRIELKSKNE 626



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 82/236 (34%), Gaps = 8/236 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++  +       +    ++     +            + ++       +   + I    
Sbjct: 787  SSIADIVKSYGPNRIERKDRKRFTVVIASVYGRPLNEVIADIKYNIDNNVYIPNGISVNY 846

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +   E   + I  ++++ + +   +  +F+   A   +    +         ALF 
Sbjct: 847  GGDYEDMNEAFSQLIQALVLALVLVYAIMASQFESLIAPF-VIAFAIPFGFAGSLIALFI 905

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 N  +    + LIG  VN+ +V+ D M  N  ++   I+  +    +    L   +
Sbjct: 906  TKTTLNAYSAIGFIVLIGIVVNNGIVLIDYM--NQLMHEKHINGDESALLAGKRRLRPVL 963

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             T++   + +LPM +    G  +    AI +  G+VV+   ++ I   I   I + 
Sbjct: 964  MTTLTTILGILPMTLGIGSGNEMYKPLAIALLGGLVVSTMFTLIIVPTIYAGIRNK 1019



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/206 (15%), Positives = 77/206 (37%), Gaps = 7/206 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + ++ +    + V    + NT     +    ++     G + + I ++IY+W  
Sbjct: 299 EVSKNVIKQLEEYNFPQGVKYEIMFNTADSINESIAGVLDAAWQGGLFAIIVLMIYMW-- 356

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                      ++ + I  T        +  N+ +++ ++  IG  V++ +VV + +   
Sbjct: 357 -NIRTVSIIAISIPISIIVTFTLMYFMKVTLNVISLSGLVLGIGMMVDNSIVVLENIF-Y 414

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            + +     +   I+ +   +L  S  T        LP     G V   F   +   + V
Sbjct: 415 YRHHGYGK-YSSAINGAYKVSLAISAST-FTTIAVFLPFLYIEGMVSQIFR-DLCITVTV 471

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +  +S+ +A  I+         N ++
Sbjct: 472 SMIASLLVAILIVPMFGARLITNKKL 497


>gi|153807246|ref|ZP_01959914.1| hypothetical protein BACCAC_01524 [Bacteroides caccae ATCC 43185]
 gi|149130366|gb|EDM21576.1| hypothetical protein BACCAC_01524 [Bacteroides caccae ATCC 43185]
          Length = 1142

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/521 (13%), Positives = 142/521 (27%), Gaps = 44/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +          I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSNASNTGAGDISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLVVFSLYDESDTYTEAFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q       +S      N       FG    R + 
Sbjct: 171 PGVGDASVMG-QDYSMRIWLRPDVMAQYKLVPGDVSAALAEQNVEAAPGQFGE---RSNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPDGEVLRLNDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               V          
Sbjct: 274 NFTNRVNGHKAVTCIVYQMAGTNATQTISDIQALLDEASQSLPAGLKINVSMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFILSLVGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   V 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMAVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F G   G   R F +TM ++I +S   A+++  A+   +
Sbjct: 454 VSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVL 494



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 75/268 (27%), Gaps = 29/268 (10%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A     +S   +  +      IS  N       +V          A T + E+  + + 
Sbjct: 863  SAGEMAPISQFITVDKVYGPDIISRFNLYTSMKVMVAPASGYTSGQALTALAEVAGQNLP 922

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT- 699
                                        G+I     + +Y+ +      +   L  + + 
Sbjct: 923  AGYTYELGGMAREEAQSSG------SATGLIFILCFVFVYLLLSAQYESYILPLAVLLSV 976

Query: 700  ---LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRK 746
               L+       G  A+  I      +           A++ L+G    + +++ +    
Sbjct: 977  PFGLLGSFLFVNGVSAIGNISMLKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA-- 1034

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAF 803
             +      +S            L   + TS+A  + +LP+   +G       +       
Sbjct: 1035 -LDRRKMGMSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIG 1093

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G+++     IFI   + +     + K  
Sbjct: 1094 GMLIGMICQIFIVPVLFVIFQYLQEKVK 1121



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 78/207 (37%), Gaps = 8/207 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                       +L+   + +   + ++   N          E+++  I   I+  I + 
Sbjct: 295 TNATQTISDIQALLDEASQSLPAGLKINVSMNANDFLFASIHEVLKTLIEAFILVFIVVY 354

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++         L     + + +  T    +L G   NL  + A++  I   V+D +VV 
Sbjct: 355 IFLQ---DLRSTLIPTIAIPVALIGTFFILSLVGFSLNLLTLCALVLAIAIVVDDAIVVV 411

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFA 798
           + +   +    TS     +   ++NE  G  V  ++      +P++  GG+       F 
Sbjct: 412 EGVHAKLDQGYTSARLASI--DAMNELGGAIVSITLVMMAVFVPVSFMGGTAGTFYRQFG 469

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYD 825
           + MA  I ++A +++ ++  +   +  
Sbjct: 470 MTMAIAIGLSALNALTLSPALCAVLLK 496


>gi|330824003|ref|YP_004387306.1| acriflavin resistance protein [Alicycliphilus denitrificans K601]
 gi|329309375|gb|AEB83790.1| acriflavin resistance protein [Alicycliphilus denitrificans K601]
          Length = 1041

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/557 (13%), Positives = 156/557 (28%), Gaps = 38/557 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G +      +       +P+                    L    
Sbjct: 10  RPVATMLLTIGLALAGAVSFFLLPVAPLPQVDYPTIS--------------VTASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +               +ITL F  SR  ++ A  V   +   
Sbjct: 56  PDTMAATVATPLERSLGAIAGVNEITSRSTLGNTRITLQFDLSRTVDSAAHDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L      N          + ++    +        +           ++   E   Q
Sbjct: 116 RTLLPSGMPSNPTYRKINPADAPIMI-LALTSSSLTRGQMYDAASTVIAQKLSQVEGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   L  +  E DP RL     +  ++                         GN   
Sbjct: 175 AAVSGGALPAVRVELDPLRLAANGISLEQVRSAIT--------------------GNNAN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                     H      N   +       +       +        ++   +  V +  V
Sbjct: 215 RPLGAVEREDHYWQLATNDQARVAAEYAPLVLRWNNGQAVRLSDVADVLDSVQDVRNYGV 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L+A         V          S    
Sbjct: 275 ANGKPAILLQVYKQPGANILEAVDKVRALLPQLKASIPAAIDLTVVSDRTPTLRASVQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +   LV++V+F+ +  G+  LV   ++  ++  T  ++ L G TL   S+  + +
Sbjct: 335 ERTLLLAVALVILVVFLFLRNGRAALVPAVAVPASLAGTFGVMYLAGYTLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +     + +S   +   G      T+   +++ +   V + F G 
Sbjct: 395 ATGFVVDDAIVVLENVLRHMERGKSALQAALDGTREIGFTVVSMSLSLIAVFVPILFMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+ M  +IL+SM  +++    M   ++R  + ++      +R       I 
Sbjct: 455 IVGRFFREFAVVMSSAILVSMVVSLTTTPMMCAHLLRAPQAQAAPRRAWARVAAWLGRIE 514

Query: 540 IQFMRARFWGVGISILF 556
               R     +   +  
Sbjct: 515 RASRRLYRRTLAWGLRH 531



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 7/139 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                   AL     +   +  T G   L G   +  ++ A+    G+ V+D +VV + +
Sbjct: 351 LFLRNGRAALVPAVAVPASLAGTFGVMYLAGYTLDNLSLMALTVATGFVVDDAIVVLENV 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S          E     V  S++     +P+   GG V      FA+ M
Sbjct: 411 ---LRHMERGKSALQAALDGTREIGFTVVSMSLSLIAVFVPILFMGGIVGRFFREFAVVM 467

Query: 802 AFGIVVAASSSIFIAAPIL 820
           +  I+V+   S+    P++
Sbjct: 468 SSAILVSMVVSL-TTTPMM 485



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 92/241 (38%), Gaps = 6/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +    +   +               + Y     V+ ++  + ++  +  +    +++ + 
Sbjct: 785  TAFARIATTNTPLAVSHQGGTPASTISYSLAPGVSLSQANDAIRAAVARLGVPVSVRGSF 844

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                   ++ +    + ++ + + + + + + ++     L  ++TL       L    LF
Sbjct: 845  SGTAGAFQQSLAGQPLLILAAILTIYLVLGVLYEDLVHPLTILSTLPSAGVGALLALMLF 904

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              EF+L A   V+ LIG    + +++ D      +      +    I ++ +  L   + 
Sbjct: 905  KTEFSLIAFIGVILLIGIVKKNAIMMID--FALSRERGGHTTPAQAIYRACDLRLRPILM 962

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS+AA +  LP+A+    G  +     + +  G++V+   +++    + + +   R +  
Sbjct: 963  TSLAAIMGALPLALGQGIGAELRRPLGLAIVGGLLVSQLLTLYTTPVVYVQLDRLRRRVN 1022

Query: 832  R 832
            R
Sbjct: 1023 R 1023


>gi|262273636|ref|ZP_06051450.1| RND multidrug efflux transporter [Grimontia hollisae CIP 101886]
 gi|262222614|gb|EEY73925.1| RND multidrug efflux transporter [Grimontia hollisae CIP 101886]
          Length = 1025

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/611 (11%), Positives = 169/611 (27%), Gaps = 44/611 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQSMF-----KMQVREYPDMTNTVVT---------ISTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT     +         +   +  
Sbjct: 55  SADLIQGFITTPLEQAVAQADNIDFMTSESVLGKSTITAYMKLNTDPNAALADILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  + +   +  +T    +++      + +   + + +  + R    Q+       
Sbjct: 115 VRAQLPGEAEDPSVSMSTGSTTAVMYIGFTSETL--DSSQITDYLERVTKPQLFTVNGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++     T   +       N           ++  +     
Sbjct: 173 SIDLYGGLKYALRVWLDPAKMAAFNLTATDVMGVLNANNYQSATGQSIGTYMIYNGAADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V D  E+                      +       +         +    +  +   
Sbjct: 233 QVSDTNELK--------------------RLVVATQEGQVIRLGDIAKVTLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +              L           V   +  A   S   
Sbjct: 273 TANGSEAVVAAINAAPTANPINIAADVLKKLPELERNMPSTIKMNVLYDSTVAINESIKE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ L G +L L ++  +V
Sbjct: 333 VVKTIIEAALIVLVVITLFLGSFRAVLIPIITIPLSLIGVAMMMELFGFSLNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKLGESPFRAAIIGTREIAVPVISMTLTLAAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ +S   A+++   M   +        K    +          
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSKMLKANEQPGKFEAKVHHFLDGMTER 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +               I+F+   +            + KG + +   A    +L  
Sbjct: 513 YAKMLKSVMGMRPVIITFAVIVFASLPMLFKLIPSELAPAEDKGVLVMMGTAPSTANLDY 572

Query: 594 VRSNLESLQIG 604
           +++ +  +   
Sbjct: 573 IQNTMAEVNQK 583



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 86/257 (33%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     + + L  +                   E            + +     +    
Sbjct: 244 VVATQEGQVIRLGDIAKVTLEKSHDIYRATANGSEAVVAAINAAPTANPINIAADVLKKL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++   +P +   N          E I++ +  +I +A+ +L+ I +    +   L  I 
Sbjct: 304 PELERNMPSTIKMNVLYDSTVAINESIKEVVKTIIEAALIVLVVITLFLGSFRAVLIPII 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +        LFG   NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSLIGVAMMMELFGFSLNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGESPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVISMTLTLAAVYAPIALMGGITGSLFKEFALTLAGAVFVSGIIALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +     +  +
Sbjct: 481 SPMMCSKMLKANEQPGK 497



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 62/160 (38%), Gaps = 6/160 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   + + + I+F+     L  + ++ L I   L   A      N+ +   ++TLIG 
Sbjct: 852  MLALAVIFLVLAIQFESLRDPLVILVSVPLAICGALIALASGAATMNIYSQVGLITLIGL 911

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++ +  ++        +   + + ++    L   + T+ A    ++P+      
Sbjct: 912  ITKHGILICEVAKEE--QLHRGVGKMEAVIEAAKVRLRPILMTTAAMIAGLIPLMYATGA 969

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G +   S  I +  G+ +    ++F+   I  ++      
Sbjct: 970  GAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYTYLASKHQP 1009


>gi|165919043|ref|ZP_02219129.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii RSA 334]
 gi|165917238|gb|EDR35842.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii RSA 334]
          Length = 1012

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/615 (13%), Positives = 173/615 (28%), Gaps = 42/615 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L  ++  +G++        +  L  FP                      +  
Sbjct: 9   RQPVLAIVLSLILVVLGVVA-----FQRLELRFFPKLELPILT---------VATTYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S +        +     + +T+ F      E  A  V   +  
Sbjct: 55  SAQLMESQVTTQIENALSGVDHIASISSTSYPGSSYVTVLFQLGGNFEEEASAVRDKVFA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  +     +   T+    +             + +    + R     +       
Sbjct: 115 IRDQLPPNANSPTITVGTKGNPVL---GIGFIDPQKSSADIRDYVERAVQPALRQLSGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    + S++     T   +       N               S  +  
Sbjct: 172 EVDILGASDYAMRIWLNASKMVAHQVTVTDVKNALTANNIYFPAGSIQEPKRNYSIVSHT 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D                          I  +  G                ++     
Sbjct: 232 QLKDATA-------------------FGNIIIKNNDGGTVRLNDIGHAELGYRSLYEAPM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      + +     + +            A ++    P     V          S   
Sbjct: 273 RINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASVNYDASTFLKSSIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV+ V+F+ +   +   +   +I +++I   A + L G T+   S+ GIV
Sbjct: 333 TFYTMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKLFGFTINTMSLLGIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I     +  + F +   G       I    +T +     + F  
Sbjct: 393 LAIGLVVDDAIVMLENIHRHIEEGMTPFQAAIKGSREISFAIIAMALTLVAVYAPVGFVQ 452

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA T+  +++IS F A+++   M   I+  +   S     + R F      
Sbjct: 453 GFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKDSRLTIIIDRAFSQLTGF 512

Query: 539 AIQFMRA---RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +F++    +       +L       +LF    +  I  +    + V    P   S+  
Sbjct: 513 YQRFLKFALNKRRLFIAGLLAIAGVGYVLFISLPSELIPKEDIGLIQVSVTSPSGASLNY 572

Query: 596 SNLESLQIGDISFQN 610
           +N  + Q+  I  QN
Sbjct: 573 TNQYAEQVEKIIQQN 587



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 82/243 (33%), Gaps = 7/243 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + L    + +   +        L+    Q  + V     ++     I + +P     + 
Sbjct: 259 HAELGYRSLYEAPMRINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASV 318

Query: 655 EIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
                   +  I +    +     + + +          A   I T+ + +     F  L
Sbjct: 319 NYDASTFLKSSIEETFYTMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG   N  ++  ++  IG  V+D +V+ + +    +     ++      K   E     +
Sbjct: 379 FGFTINTMSLLGIVLAIGLVVDDAIVMLENIH---RHIEEGMTPFQAAIKGSREISFAII 435

Query: 774 YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++       P+     +   +   FA  +A  +V++A  ++ ++  +   I   R K+
Sbjct: 436 AMALTLVAVYAPVGFVQGFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKD 495

Query: 831 ARI 833
           +R+
Sbjct: 496 SRL 498



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 88/274 (32%), Gaps = 11/274 (4%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            +         DF    +L V +N   D +   S   S  I            +F      
Sbjct: 743  IVQMDKKDLTDFNALKKLYVHSNNKTDANKGNSIPVSSLIDLTPTVGQGSFTHFNRFRSG 802

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLI 682
                 +A       V   I   VP     +        + + ++     + I  +  + I
Sbjct: 803  TISARLAPGYSESQVIDYIKAHVPFVMTSDVHYAFSGKAAQFLQSSKSMIGIILMSLIFI 862

Query: 683  YIWIRFKWYFALGA-ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVV 739
            Y+ +  ++   L   +  L + +    G  +L   G   ++ +   ++TLIG      ++
Sbjct: 863  YLVLSAQFGSFLDPFVILLAVPLCIVGGLLSLKLTGGTLSIYSQIGLVTLIGMISKHGIL 922

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GS 796
            +   +     L    ++ ++ I +     L   + T++A     LP+A+  G   I    
Sbjct: 923  ITQFIND---LRKQGMAMQEAILRGAMIRLRPVLMTTLAMVFGALPLALASGPGSIGRHQ 979

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                +  G++     S+ I  PI         K 
Sbjct: 980  IGWVIVGGLLFGTFFSL-IVVPIAYSYLGRFKKR 1012


>gi|81298953|ref|YP_399161.1| preprotein translocase subunit SecD [Synechococcus elongatus PCC
           7942]
 gi|81167834|gb|ABB56174.1| protein-export membrane protein SecD [Synechococcus elongatus PCC
           7942]
          Length = 464

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 130/515 (25%), Positives = 212/515 (41%), Gaps = 76/515 (14%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL----EVDEDDFVNG 68
           +I  + L+ A    L Q              I LGLDL+GGS L +      +     + 
Sbjct: 8   LILILALVAAAIFVLVQLP------------IRLGLDLQGGSQLTILVKPTTEIPSVGDR 55

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
            L+     + + +   G+    ++    +KI +        E     +    Q    + N
Sbjct: 56  ELEAVQRVIENRVNGLGVSEAVIQTAGSDKILVQLPGVSNPEQAERVLGGTAQLEFREQN 115

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              +  +         +    +          + +  + + +   ++             
Sbjct: 116 PGTEAQVTPLQQLVSQARGALEIERRNGDPTKVAELEQTLERSQVELAKFFG-------- 167

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                               T   +      P  +   +   +RF  +       +   +
Sbjct: 168 ----------------PAQITGKSLKDALAQPTQTGNTWEVALRFDTEGGDQFAALTKNL 211

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
             +G  +                                         V++   V+    
Sbjct: 212 AGTGRSIGIFL-----------------------------------DGVLISAPVVGPEF 236

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
               I  G A I+G FT E A  LA  LR G+LP+ + IVE R VGA LG DSI +   A
Sbjct: 237 AQTGITGGSAVITGRFTTEQAEDLAIQLRGGALPLPVEIVENRTVGATLGRDSIQRSIYA 296

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + GL+L+++FM+  Y   GL+AD S+ +  +L+LA   LLG TLTLP IAG +L IG+A
Sbjct: 297 GIGGLLLVLIFMVAYYQLPGLIADISLAIYALLSLAAFDLLGVTLTLPGIAGFLLSIGMA 356

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+ ER REE R  +S++ S++ GF RA+S+I DSN+T LIA   LF+   G V+G
Sbjct: 357 VDANVLIFERTREELRAGKSLYRSVESGFYRAFSSILDSNVTTLIACGALFWLSSGLVKG 416

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           FA+T+ + +++SMFTAI+  R +M   I Y  ++ 
Sbjct: 417 FALTLAIGVMVSMFTAITCSRTLMFLAIAYPALRK 451



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 88/225 (39%), Gaps = 4/225 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+ + I          +           G    +      ++ +   +     I     V
Sbjct: 222 LDGVLISAPVVGPEFAQTGITGGSAVITGRFTTEQAEDLAIQLRGGALPLPVEIVENRTV 281

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ I++ I   I   + +LI++   ++    L A  +L +    +L  F L G+ 
Sbjct: 282 GATLGRDSIQRSIYAGIGGLLLVLIFMVAYYQLP-GLIADISLAIYALLSLAAFDLLGVT 340

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  L  IG +V+  V++++R R+ ++      S    ++          + +++
Sbjct: 341 LTLPGIAGFLLSIGMAVDANVLIFERTREELRA---GKSLYRSVESGFYRAFSSILDSNV 397

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +      ++  FA+ +A G++V+  ++I  +  ++  
Sbjct: 398 TTLIACGALFWLSSGLVKGFALTLAIGVMVSMFTAITCSRTLMFL 442


>gi|84387919|ref|ZP_00990933.1| putative RND efflux transporter [Vibrio splendidus 12B01]
 gi|84377265|gb|EAP94134.1| putative RND efflux transporter [Vibrio splendidus 12B01]
          Length = 1015

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/558 (13%), Positives = 157/558 (28%), Gaps = 35/558 (6%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           +            +               ++ IT+        ++ 
Sbjct: 45  ITITTSYPGASASSVQGYVTQPLQAEIAQTAGIDYMTSDSALGKSVITVYLKLGYPSDSA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++   +Q V  KL        ++ +T +   I+    + D + +  +  S  + R   
Sbjct: 105 LTEILSLVQQVKYKLPSGVLDPSILKSTSQS-PILYVSFSSDTLKTEQV--SDYVSRVVK 161

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
                 E   +     +    +    +P RL     T   +       N           
Sbjct: 162 PTFSTVEGVSKVDILGQEDFAMRIWLNPQRLASYGLTAEDVQNALRANNIVSAAGKLQNP 221

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           ++                         A+ D  +     +++      +         + 
Sbjct: 222 YIE--------------------VDINAHTDSSSVDDFKNMALKAHDGQLVHLKDVATVE 261

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
              A                  S  A  +    +E    L   ++AG        V   +
Sbjct: 262 LGAANYDSDVEFNGVTTVSTAISNTATSNPLTVVEGIYELLPQIQAGLPEGIKADVIYDS 321

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T    A +V+IV+F  +   +  L+   +I L++I ++  +  +G +
Sbjct: 322 TKFIETSIDEVAKTLIEAALIVVIVIFAFLGSMRAMLIPLVTIPLSLIGSMFFMLSMGFS 381

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           + L ++  +VL I L VD  I+V E          S   +          ++    IT  
Sbjct: 382 INLLTLLAMVLAISLVVDDAIVVVENTFRHLEDGTSPIKAAIDSAREIAGSVIAMTITLA 441

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSI 523
                + F G   G     FA T+  S+LIS F A+++   M   ++       K +K I
Sbjct: 442 AVYAPIGFMGGLTGKLFTEFAFTLAGSVLISGFIALTLTPMMCSKLLNKSVLDGKLVKKI 501

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           D             +        +    +  L        + T       + +G + +  
Sbjct: 502 DAVIEGVTERYRKVLEHVLNNRVYIWPVVGTLLISLVFMFMNTSSELAPEEDQGVMIVMG 561

Query: 584 LANRPVDLSVVRSNLESL 601
                 +   +R    +L
Sbjct: 562 QGPAQANTDYIRHFTPAL 579



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/240 (11%), Positives = 72/240 (30%), Gaps = 6/240 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +         N     +  +              + E++ +    +           
Sbjct: 261 ELGAANYDSDVEFNGVTTVSTAISNTATSNPLTVVEGIYELLPQIQAGLPEGIKADVIYD 320

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +       +  + I +++           L  + T+ L +  ++ F    G 
Sbjct: 321 STKFIETSIDEVAKTLIEAALIVVIVIFAFLGSMRAMLIPLVTIPLSLIGSMFFMLSMGF 380

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             NL  + A++  I   V+D +VV +      +      S       S  E  G  +  +
Sbjct: 381 SINLLTLLAMVLAISLVVDDAIVVVEN---TFRHLEDGTSPIKAAIDSAREIAGSVIAMT 437

Query: 777 MAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +       P+   GG        FA  +A  ++++   ++ +   +   + +    + ++
Sbjct: 438 ITLAAVYAPIGFMGGLTGKLFTEFAFTLAGSVLISGFIALTLTPMMCSKLLNKSVLDGKL 497



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 78/240 (32%), Gaps = 8/240 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
              +     L SL     S Q    ++   +         +    + E  K        + 
Sbjct: 767  SNTNEMVPLASLIEISQSVQPSKVDQFQQLNSAMIEAKMMPGISIGEAYKVMEEGAAKIL 826

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                T     ++ + L     +        ++IY+ +          L  +T++ L I  
Sbjct: 827  PKSYTTDTSGQLRQFLQEGSSLVTTFFLALVIIYLVLAAQFESLRDPLVVLTSVPLSIFG 886

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L    L     N+     ++TLIG      +++ +    N        S R+   +S  
Sbjct: 887  ALMPLYLGIDTLNIYTEVGLVTLIGLISKHGILIVE--FANQMQQELKCSRREAAIRSAT 944

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +   + T+ A  + V+P+ +    G     S  + +  G+ V    ++F+   I  ++
Sbjct: 945  VRMRPVLMTTAAMVVGVVPLLIASGAGAQSRFSIGLVITVGMSVGTLFTLFVVPTIYTYL 1004


>gi|146277545|ref|YP_001167704.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17025]
 gi|145555786|gb|ABP70399.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17025]
          Length = 1088

 Score =  147 bits (369), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/599 (12%), Positives = 165/599 (27%), Gaps = 40/599 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ + ++  +G             + RFP+                  +     
Sbjct: 9   RNPVAPILGFVLLMVLG-----WQSFNTLPITRFPNIDVPLV---------AVTVDQAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + +        ++   ++     F      +         +  
Sbjct: 55  APAEMETQVTKEIEDAVAGITGVKNITSTVVDGRSTTVAEFRMEVPTDKAVQDTKDAIDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D +  ++     +  +I+    +   +     E S  +       +       
Sbjct: 115 IRGDLPGDIEAPIVTRIDVEGQAIMTFAVSSPNMTIE--ELSWFVDDTITRSLQGRPGIG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  E DP +L     T  +++      N +       +     +     
Sbjct: 173 RVDRYGGAEREIRVELDPVKLDSFGITAPQVNAQLRATNANLGSGRAELGQGEQAIRVLG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++   +   +  F   +    V  S                            
Sbjct: 233 DAATADRLALTMIALPSGRFVRLSDLGTVVDS---------------------YEEPRSF 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A+ +   ++           A + P     + +  V    G+   
Sbjct: 272 SRFNGEPVVTFAVFRAKGASEVSVAETVNSVLADLAAAHPEVRTELVDDTVFYTYGNYEA 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L  +V+   +   +   +A  ++ L+ + T  ++ LLG +L L S   I 
Sbjct: 332 ALHTLLEGALLATLVVLAFLRNWRATFIAALALPLSAVPTFFVMDLLGFSLNLVSFLAIT 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S F +           +  +++T +   V + F  
Sbjct: 392 LATGILVDDAIVEIENIARHIRMGKSPFRAAIDAADEIGMAVIATSLTIVAVFVPVSFMP 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F +T+ +S+L S+  A  I   M  +++R K                   +
Sbjct: 452 GIPGQYFAQFGLTVAISVLFSLMVARLITPMMAAYLMRPKDADEKPHQDGILMRGYLALV 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                      V    +F++    +L   G     +    I L V       L      
Sbjct: 512 KQTLRMRYLTLVAAIAVFALSMFFMLRIPGSFIPPEDVSRIPLSVELAPGTSLDETDRT 570



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 80/256 (31%), Gaps = 6/256 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + + R V LS + + ++S +      +            + +    V+    +  V 
Sbjct: 244 MIALPSGRFVRLSDLGTVVDSYEEPRSFSRFNGEPVVTFAVFRAKGASEVSVAETVNSVL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P    +  +                 +  + +A L+ +     W     A   
Sbjct: 304 ADLAAAHPEVRTELVDDTVFYTYGNYEAALHTLLEGALLATLVVLAFLRNWRATFIAALA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L    T     L G   NL +  A+    G  V+D +V  + +    +      S   
Sbjct: 364 LPLSAVPTFFVMDLLGFSLNLVSFLAITLATGILVDDAIVEIENI---ARHIRMGKSPFR 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
               + +E     + TS+      +P++   G        F + +A  ++ +   +  I 
Sbjct: 421 AAIDAADEIGMAVIATSLTIVAVFVPVSFMPGIPGQYFAQFGLTVAISVLFSLMVARLIT 480

Query: 817 APILLFIYDWRAKNAR 832
             +  ++   +  + +
Sbjct: 481 PMMAAYLMRPKDADEK 496



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/184 (19%), Positives = 71/184 (38%), Gaps = 7/184 (3%)

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E    ++ +EL+      +I+  + +L + I +          + +L L I        
Sbjct: 856  QEAGDAEVQQELMTSFGNAMILGLMLVLTVLILLFRSVLQPFTILLSLPLAIGGVAAALI 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G   ++  +  +L L+G    + +++ D   +        +     I ++ ++     
Sbjct: 916  LTGSALSMPVLIGILMLMGIVTKNAILLVDFAVEMRA---RGMDRFSAIMEAGHKRARPI 972

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            V TS+A    +LP A+    GG      A  +  GI+V+   S+ I     L + D    
Sbjct: 973  VMTSIAMSAGMLPSALGVGEGGPFRAPMATAVIGGIIVSTILSLVIVPSFFLIMDDLSRL 1032

Query: 830  NARI 833
             AR+
Sbjct: 1033 IARL 1036


>gi|237716765|ref|ZP_04547246.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405540|ref|ZP_06082090.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294809614|ref|ZP_06768307.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229442748|gb|EEO48539.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262356415|gb|EEZ05505.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294443226|gb|EFG12000.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 1143

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/527 (13%), Positives = 146/527 (27%), Gaps = 44/527 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +         +I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSTASNTGSGEISIYFKQGTNPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLVVFSLYDETDTYSESFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q       +S      N       FG    R + 
Sbjct: 171 PGVGDANVLG-QDYSMRIWLRPDVMAQYKLVPGDVSAALAEQNVEAAPGQFGE---RSNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPDGEVLRLKDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               +          
Sbjct: 274 NFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKLNISMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVVKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFILSLVGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   V 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMAVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   R F +TM ++I +S   A+++  A+   +++  K 
Sbjct: 454 VSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHKK 500



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 76/268 (28%), Gaps = 29/268 (10%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A     ++   S  +      IS  N       +V          A T + E+ ++ + 
Sbjct: 864  SAGEMAPIAQFISVEKVYGPDIISRFNLYTSMKVMVAPASGYTSGQALTALAEVAQENLP 923

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT- 699
                                        G+I     + +Y+ +      +   L  + + 
Sbjct: 924  TGYTYELGGMAREEAQSSG------SATGLIFVLCFVFVYLLLSAQYESYILPLAVLLSI 977

Query: 700  ---LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRK 746
               L+       G  A+  I      +           A++ L+G    + +++ +    
Sbjct: 978  PFGLLGSFLFVNGVSAIGNISALKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA-- 1035

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAF 803
             +      +S            L   + TS+A  + +LP+   +G       +       
Sbjct: 1036 -LDRRKMGMSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIG 1094

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G+++     IFI   + +     + K  
Sbjct: 1095 GMLIGMICQIFIVPALFVIFQYLQEKVK 1122



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          + + +    +    +  Q    ++      +E +  + ++ +P     
Sbjct: 262 DIAEIQLDRLGYNFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKL 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + +  +I + I + I ++I        L     + + +  T    
Sbjct: 322 NISMNANDFLFASIHEVVKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFIL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +    TS     +   ++NE  G 
Sbjct: 382 SLVGFSLNLLTLCALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASI--DAMNELGGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V  ++      +P++  GG+       F + MA  I ++A +++ ++  +   +     
Sbjct: 440 IVSITLVMMAVFVPVSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHK 499

Query: 829 K 829
           K
Sbjct: 500 K 500


>gi|91788688|ref|YP_549640.1| acriflavin resistance protein [Polaromonas sp. JS666]
 gi|91697913|gb|ABE44742.1| acriflavin resistance protein [Polaromonas sp. JS666]
          Length = 1052

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/613 (12%), Positives = 170/613 (27%), Gaps = 30/613 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATSLLMVAIVLAGLVGFKFLPLSALPQVDYPTIQ--------------VQTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +     + +TL F      +    +V   +   
Sbjct: 56  PEVMAQTVTAPLERQFGQMAGLQRMSSTSAAGVSIVTLQFGLGLTLDVAEQEVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     +        + VL+   I        E    +  +   +I        
Sbjct: 116 GSLLPADLPAPPVYAKVNPADAPVLT-LAITSDTMPLTEVQNIVNTRLALKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + D   L         +       N +             S  +   
Sbjct: 175 VTLSGGQRPAVRIQADTRALASYGLALDSLRTDISAANANGAKGSIDGPTRAYSINSNDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +   + +          +    V  S + +    +       +            
Sbjct: 235 LLAAADYKNLIVAWRNGAAVRLSEVAQVVDSAENIKLGAWSGGDCPPLTASRPPPEGDNC 294

Query: 303 LTAP-----VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           L A               +   +   T++        L+AG        V          
Sbjct: 295 LGAARRQLTPAIILNVQRQPGANVIATVDAIKARLPELQAGLPASMKVDVLSDRTTGIRA 354

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    +    +   LV++V+F+ +   +  ++A  ++ +++I T   + LLG +L   S+
Sbjct: 355 SVLHVEIELLLAVLLVVLVIFVFLHSVRATVIASLAVPISLIGTCGAMYLLGYSLNNLSL 414

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + +  G  VD  I++ E I     + +    +   G  +   TI    ++ +   + L
Sbjct: 415 MALTIATGFVVDDAIVMIENISRYIEQGEEPLAAAFKGARQIGFTIISLTVSLIAVLIPL 474

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-------KKMKSIDINP 527
            F G   G   R FA+T+ ++ILIS   ++++V  M    +R+       K    +    
Sbjct: 475 LFMGDVVGRLFREFAVTLAITILISAVVSLTLVPMMSARWLRHLPAGEGSKTGARLQALT 534

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     ++    R     +       +  +  +      +     G +Q  +   +
Sbjct: 535 DRVIARYDRWLSWVLQRQGATLLVALATLLLTVLLYIVIPKGLFPTQDTGQLQARIETAQ 594

Query: 588 PVDLSVVRSNLES 600
            V  + +    ++
Sbjct: 595 SVSYARMADLQQA 607



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 55/145 (37%), Gaps = 10/145 (6%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                + A   + + +  T G   L G   N  ++ A+    G+ V+D +V+ + +    
Sbjct: 380 SVRATVIASLAVPISLIGTCGAMYLLGYSLNNLSLMALTIATGFVVDDAIVMIENI---S 436

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +             K   +     +  +++    ++P+   G   G +   FA+ +A  I
Sbjct: 437 RYIEQGEEPLAAAFKGARQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFREFAVTLAITI 496

Query: 806 VVAASSSIFIAAPILLFIYDWRAKN 830
           +++A  S+     ++  +     ++
Sbjct: 497 LISAVVSL----TLVPMMSARWLRH 517


>gi|307826237|ref|ZP_07656446.1| acriflavin resistance protein [Methylobacter tundripaludum SV96]
 gi|307732699|gb|EFO03567.1| acriflavin resistance protein [Methylobacter tundripaludum SV96]
          Length = 1034

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 79/625 (12%), Positives = 175/625 (28%), Gaps = 53/625 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ ++   GLL           +   P           LDL     + +   
Sbjct: 9   RNPIPALMLFVLLSFGGLLS-----FQSMKVQNMPD----------LDLP---TVTVTAS 50

Query: 62  EDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   L+       +   + L+        ++     IT  F   +  + + D +  
Sbjct: 51  LPGASPSQLESEVARKIENAIATLQGLKHITTKVQDGSVIITAEFRLEKPVQEVVDDMRS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L  D +  ++         I+       Q    A   S  +      ++   
Sbjct: 111 AVSKVRSDLPADLRDPVVTKLDLAGSPILAFTVASAQRDDEA--LSWFVEDTIAKKLLSV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q         ++    DP +L+ L  T A +S           G    +       
Sbjct: 169 RGVGQVSRVGGASREVAIALDPVKLQSLGATAADISRQLRAIQRESAGGRTNLSSGEQPV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V    E+                      +       R F       I   +A  
Sbjct: 229 RTLANVASVEEM--------------------RPLQLSLADGRSFRLDQVATIDDTVAEP 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L    +     +     S            A LR  +  I+        V     
Sbjct: 269 RSLALLNGKPVVGFEVTRSRGASDVEVGAGVQKALAELRLANPDIEFTE-AFNFVTPVQE 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                       A L ++V+++ +   +   ++  ++ L++I     +  LG +L   ++
Sbjct: 328 EFHGSMTMLYEGALLAILVVWLFLKDWRATFISSVALPLSIIPAFLGMDYLGFSLNGITL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + L +G+ VD  I+  E I    R  ++ + +           +  +    +   +  
Sbjct: 388 LALSLVVGILVDDAIVEVENIVRHLRMGKTPYQAAMQAADEIGLAVVATTFALVAVFLPT 447

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + F  T  L++L S+  A  +   M  ++++           + + ++ 
Sbjct: 448 AFMSGIAGRFFKQFGWTAALAVLASLVVARMLTPMMAAYLLKDSGHFEPPEGRIMKNYMK 507

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL-----ANRPV 589
                ++             + S+  I LL T  +    + +  + + +      A    
Sbjct: 508 LAAWCLKHRLTTIAAAAAFFIGSLLLIPLLPTGFIPPDDNPQTQVFVELSPGAGLAQTSA 567

Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614
                R  + ++      +    G 
Sbjct: 568 SAEAARQLVANVPYVKSVYTTIGGG 592



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 68/238 (28%), Gaps = 6/238 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  V +  +++                    + +    V     ++    ++    P   
Sbjct: 255 LDQVATIDDTVAEPRSLALLNGKPVVGFEVTRSRGASDVEVGAGVQKALAELRLANPDIE 314

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                     +  E      +    + +A+L+       W     +   L L I      
Sbjct: 315 FTEAFNFVTPVQEEFHGSMTMLYEGALLAILVVWLFLKDWRATFISSVALPLSIIPAFLG 374

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   N   + A+  ++G  V+D +V  + +   ++      +      ++ +E   
Sbjct: 375 MDYLGFSLNGITLLALSLVVGILVDDAIVEVENI---VRHLRMGKTPYQAAMQAADEIGL 431

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             V T+ A     LP A   G        F    A  ++ +   +  +   +  ++  
Sbjct: 432 AVVATTFALVAVFLPTAFMSGIAGRFFKQFGWTAALAVLASLVVARMLTPMMAAYLLK 489



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 65/158 (41%), Gaps = 3/158 (1%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
           +   I   ++  EL     + ++   + + I + + F ++   +  +  L L        
Sbjct: 834 KRINIGDAEMMAELFASFGLAMLTGMLCIFIVLVLLFKEFLQPITILAALPLSFGGGFVA 893

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             L G  F++ ++  ++ L+G +  + +++ +     +      +  RD +  +  +   
Sbjct: 894 LLLTGKAFSMPSLIGLIMLMGIATKNSILLVE--YAIVARRDHGMPRRDALLDACRKRAR 951

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             V T++A    +LP+A+  G    SF  PMA  ++  
Sbjct: 952 PIVMTTIAMGAGMLPVALGMGGADSSFRSPMAVAVIGG 989


>gi|293371560|ref|ZP_06617978.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
 gi|292633508|gb|EFF52073.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Bacteroides ovatus SD CMC 3f]
          Length = 1143

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/527 (13%), Positives = 146/527 (27%), Gaps = 44/527 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G +      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGAI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +         +I++ F      +  A  V  
Sbjct: 51  TGASASTVLNSVIAPLEEQINGVENMMYMTSTASNTGSGEISIYFKQGTNPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +V+     +                 I Q+   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLVVFSLYDETDTYSESFIENYAKINLIPQVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q       +S      N       FG    R + 
Sbjct: 171 PGVGDANVLG-QDYSMRIWLRPDVMAQYKLVPGDVSAALAEQNVEAAPGQFGE---RSNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                 I       
Sbjct: 227 TFQYTIRYKGRL-------------QQPEEFENIVIKSLPDGEVLRLKDIAEIQLDRLGY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L               +          
Sbjct: 274 NFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKLNISMNANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFILSLVGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL I + VD  I+V E +  +  +   S   +     +     I    +  +   V 
Sbjct: 394 CALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASIDAMNELGGAIVSITLVMMAVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           + F G   G   R F +TM ++I +S   A+++  A+   +++  K 
Sbjct: 454 VSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHKK 500



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 76/268 (28%), Gaps = 29/268 (10%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A     ++   S  +      IS  N       +V          A T + E+ ++ + 
Sbjct: 864  SAGEMAPIAQFISVEKVYGPDIISRFNLYTSMKVMVAPASGYTSGQALTALAEVAQENLP 923

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT- 699
                                        G+I     + +Y+ +      +   L  + + 
Sbjct: 924  TGYTYELGGMAREEAQSSG------SATGLIFVLCFVFVYLLLSAQYESYILPLAVLLSI 977

Query: 700  ---LILDITKTLGFFALFGIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRK 746
               L+       G  A+  I      +           A++ L+G    + +++ +    
Sbjct: 978  PFGLLGSFLFVNGVSAIGNISALKMILGTMSNNIYMQIALIMLMGLLAKNAILIVEFA-- 1035

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIPMAF 803
             +      +S            L   + TS+A  + +LP+   +G       +       
Sbjct: 1036 -LDRRKMGMSITWAAVLGAGARLRPILMTSLAMVVGLLPLMFAFGVGAHGNRTLGTASIG 1094

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G+++     IFI   + +     + K  
Sbjct: 1095 GMLIGMICQIFIVPALFVVFQYLQEKVK 1122



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +          + + +    +    +  Q    ++      +E +  + ++ +P     
Sbjct: 262 DIAEIQLDRLGYNFTNRVDGHKSVTCIVYQMAGTNATQTISDIEALLDEASKTLPTGLKL 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + +  +I + I + I ++I        L     + + +  T    
Sbjct: 322 NISMNANDFLFASIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPTIAIPVALIGTFFIL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +    TS     +   ++NE  G 
Sbjct: 382 SLVGFSLNLLTLCALVLAIAIVVDDAIVVVEGVHAKLDQGYTSARLASI--DAMNELGGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            V  ++      +P++  GG+       F + MA  I ++A +++ ++  +   +     
Sbjct: 440 IVSITLVMMAVFVPVSFMGGTAGTFYRQFGMTMAIAIGLSALNALTLSPALCAVLLKPHK 499

Query: 829 K 829
           K
Sbjct: 500 K 500


>gi|149175879|ref|ZP_01854497.1| hypothetical protein PM8797T_24711 [Planctomyces maris DSM 8797]
 gi|148845326|gb|EDL59671.1| hypothetical protein PM8797T_24711 [Planctomyces maris DSM 8797]
          Length = 1154

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/523 (12%), Positives = 146/523 (27%), Gaps = 39/523 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      +++  +I  +G L           + +FPS  P + +           +    
Sbjct: 6   LHRPALAIVISLLILFMGGLAIF-----GLPISQFPSVAPPSVVVA---------VSFPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKVT 116
                    +      L   +     +   S       +  I + F            V 
Sbjct: 52  SSAKI---LVDSTLVILERAINGVPNMRYMSSAATSAGEASIMIVFEPGTDPNVAVLNVN 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q V ++L    ++  ++        ++                   +    + +I  
Sbjct: 109 NRIQMVKNRLPPIVEREGIIVMQNMTSMLMYVNVYSKDPNHDQNFLYNYVSVNLLPEIQR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +  E +  R+R    ++A +       +        G      S
Sbjct: 169 IRGVGRATILGNRAYAMRVELNLERMRAYNISSADIMEAIKEQSIIGSPGRLGQATGTTS 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y++                    K  +    I                 +    + 
Sbjct: 229 QTIEYVLT-------------WVGRYNKPEQYEQIILRSNPNGEILRLSDVAKVSLGSSF 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEERNVGAD 355
                 +        +       +    IE     L  +      P     V        
Sbjct: 276 YDLYSDIDGLPSASIVLKQTPGSNAAEVIEEVKKKLEEVKGESFPPGIDYAVSYDVSSFL 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV +V+++ +   +  L+   ++ +++I T   +S+ G ++ L 
Sbjct: 336 DASIEKVLHTLFEAFILVSLVVYLFLGDFRSTLIPTLAVPVSLIGTFFFMSMFGMSINLI 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM----GFSRAYSTIFDSNITAL 471
           ++  +VL IG+ VD  I+V E +  +  +      +         S A   I     +  
Sbjct: 396 TLFALVLAIGVVVDDAIVVVEAVHAKMHEKHLSPYAATREVVHEISGAIIAITLVMTSVF 455

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           I    +    G   R FA+TM +SI++S   A+++   +   I
Sbjct: 456 IPVTFMPGAVGVFYRQFALTMAMSIVLSGVVALTLTPVLCAMI 498



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 77/245 (31%), Gaps = 10/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +     Q  +    + +        + A           I E+  
Sbjct: 881  FVKNDDGEMVPYSSFMKIKKTQGMNEINRYNLYTTAIIQGAPATGFSSGQAIDAIKEVAE 940

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWI---RFKWYFALGAITTLILD 703
             +      I    ++ +   KG   + I + + + +Y+ +      +   L  I +L + 
Sbjct: 941  QTLPHGYGIGWQGLAYDEANKGNTAIYIFAIVVIFVYLVLVGQYESFLLPLAVIASLPVG 1000

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +  +  F    G+  ++     ++ L+G    + +++ +     ++     +S +D   +
Sbjct: 1001 LFGSFLFLKAMGLANDVYCQIGLVMLVGLLGKNAILIIEFA---VQRRQEGLSIKDAAIE 1057

Query: 764  SINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
              N      V TS A    ++P+    G   I   +       G+++     + +   + 
Sbjct: 1058 GGNLRFRPIVMTSFAFIAGLVPLVRATGPGAIGNRTIGSTAVGGMLMGTLIGVLVIPGLY 1117

Query: 821  LFIYD 825
                 
Sbjct: 1118 YLFGK 1122



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 89/235 (37%), Gaps = 10/235 (4%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V + +L S      S  +     + +++       +     V + +++   E  P   
Sbjct: 264 SDVAKVSLGSSFYDLYSDIDGLPSASIVLKQTPGSNAAEVIEEVKKKLEEVKGESFPPGI 323

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLG 709
                          I K +  +  + I + + +      +   L     + + +  T  
Sbjct: 324 DYAVSYDVSSFLDASIEKVLHTLFEAFILVSLVVYLFLGDFRSTLIPTLAVPVSLIGTFF 383

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F ++FG+  NL  + A++  IG  V+D +VV + +    K++   +S      + ++E  
Sbjct: 384 FMSMFGMSINLITLFALVLAIGVVVDDAIVVVEAVH--AKMHEKHLSPYAATREVVHEIS 441

Query: 770 GRSVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           G  +  ++   +    +P+    G+V      FA+ MA  IV++   ++ +   +
Sbjct: 442 GAII--AITLVMTSVFIPVTFMPGAVGVFYRQFALTMAMSIVLSGVVALTLTPVL 494


>gi|330895771|gb|EGH28060.1| acriflavin resistance protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 961

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/500 (13%), Positives = 141/500 (28%), Gaps = 37/500 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPIAPLPEAEFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       +TL F  ++  +  A +V   +     +L  D              S
Sbjct: 82  TQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADLPSLPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL  +    +I    E S         Q+   E   Q   + +    +  +  P +L  
Sbjct: 142 PVLILSVSSSLIPG-TELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L  T A +                              +          ++  ++N    
Sbjct: 201 LGLTLADIRQAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                         +   +   T
Sbjct: 241 KPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V          S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRIQGELPRLQEMLPASVDVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQL 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            Q +  +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMK 521
            ++++   +    +R     
Sbjct: 481 VSLTLAPTLAALFMRAPTHH 500



 Score = 84.7 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 89/250 (35%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ ++ ++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQGEL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPASVDVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495


>gi|227833239|ref|YP_002834946.1| protein-export membrane protein SecD [Corynebacterium aurimucosum
           ATCC 700975]
 gi|227454255|gb|ACP33008.1| protein-export membrane protein SecD [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 617

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 106/582 (18%), Positives = 197/582 (33%), Gaps = 67/582 (11%)

Query: 2   RNNPW-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           R   W    +      + ++ AL            P         LG+DL+GG+ + L  
Sbjct: 12  RQRQWPKRAMALFALIVIVVYAL--IFLTGDKSPTP--------KLGIDLQGGTRVTLVP 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR--FKENIADKVTLF 118
             +D     LQ     L   +   G+    +    + + ++         + +     L 
Sbjct: 62  QGEDPTQEQLQQARTILEQRVNGMGVSGSEVVISGSSLVITVPGEDASQAQAVGQTSQLL 121

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKE---------------------ISIVLSQNNIDQVIS 157
            + V  +   D        T                          ++  S         
Sbjct: 122 FRPVGEQPMPDMDTLEKTMTDMANRWVKYGVVTPEHANQSLASIHEALNQSAGAAQGGDQ 181

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM----S 213
              E+        + +  + +       + R            +       TA +     
Sbjct: 182 KDKEKDDNSPAPTVSEKPLPDPANSLEETERRDKVTEVLLKDRQSEDPTVQTAALGLMTC 241

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE-----------DKVEISGIHLNGATA--- 259
             +  P          +     S+   Y++            +   ++G  ++       
Sbjct: 242 DAESDPLAGTDDPAKPLVACDYSNQQPYILNPAPLLDGIDDPNGTRLTGNEIDNNAPIQG 301

Query: 260 ----NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPS 314
                                 G++ +  +T++ + K +A+ LD  V++APVI  A    
Sbjct: 302 GLNSQTGQMEINFAFKTGDGPNGSQTWATLTQEYLQKQVAITLDSAVISAPVIQGATPVG 361

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTCAI 368
               I+G+FT E A  LA  LR G+LP+               V   LG  ++     A 
Sbjct: 362 SATSITGDFTQEEAQNLANNLRYGALPLSFTGANGEPGGTVETVPPSLGKAALEAALIAG 421

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGI 424
           + GL+L+ L+ I  +     VA   +    +L    L LL    G +L L  +AG+V+GI
Sbjct: 422 IVGLILVSLYSIYYFRALSSVALLVLIATCVLLYGALVLLGRWIGYSLDLSGMAGLVIGI 481

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G   DS ++  ER+++E    ++   +   G+ R+ +TI       LI +VV++F   GA
Sbjct: 482 GATADSFVVYYERMKDELLSGRTFRSATRTGWERSRATIVTGKAVTLIGSVVVYFLSIGA 541

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           V+GFA TMGL+ +  +  +  I+  +M  +          +N
Sbjct: 542 VKGFAFTMGLTTIFDLVVSFLIMAPLMQLLGSRPAFAKPSMN 583



 Score =  109 bits (270), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 74/267 (27%), Gaps = 8/267 (2%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +                  +          +  +   +    I      G    +     
Sbjct: 312 INFAFKTGDGPNGSQTWATLTQEYLQKQVAITLDSAVISAPVIQGATPVGSATSITGDFT 371

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
           Q         +                    E V P + +  +   ++  I+  I + +Y
Sbjct: 372 QEEAQNLANNLRYGALPLSFTGANGEPGGTVETVPPSLGKAALEAALIAGIVGLILVSLY 431

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVV 739
               F+   ++  +  LI       G   L G       +L+ +A ++  IG + +  VV
Sbjct: 432 SIYYFRALSSVALLV-LIATCVLLYGALVLLGRWIGYSLDLSGMAGLVIGIGATADSFVV 490

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
            Y+RM+  +    +  +FR         +    V       I  + +       +  FA 
Sbjct: 491 YYERMKDELL---SGRTFRSATRTGWERSRATIVTGKAVTLIGSVVVYFLSIGAVKGFAF 547

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDW 826
            M    +     S  I AP++  +   
Sbjct: 548 TMGLTTIFDLVVSFLIMAPLMQLLGSR 574


>gi|319786601|ref|YP_004146076.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465113|gb|ADV26845.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 1035

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 52/461 (11%), Positives = 128/461 (27%), Gaps = 24/461 (5%)

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +            +    +     +        +     + ITL FA          +V 
Sbjct: 50  LYPGASPSVTTSAVTAPLERRLGQIPGLNQMTSTSSGGASVITLQFALEVDLGVAEQEVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             + G ++ L  D     +        + +L+   +        E    +  +   ++  
Sbjct: 110 AAINGASNFLPSDLPMPPVYRKVNPADTPILT-LAVTSPSMALPEVYDLVDTRMAQRLSQ 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                    +      +  + +P+ L         +       N +     F        
Sbjct: 169 LPGVGLVSLAGGQRPAVRIQVNPNALAAAGLGMGDIRRVINSANVNMPKGSFDGP----- 223

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                 AN   ++      +                 + +    
Sbjct: 224 ---------------TRATMLDANDQMRSADEYRGLVLAWKDGAPLRLGDVATVEQGPEN 268

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                              +   +    ++    L   LRA         V      +  
Sbjct: 269 SQLAAWSGKAPAILVNIQRQPGANVIEVVDRIHALLPQLRASMPAAVDVTVLSDRTESIR 328

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    +    +  GLV++V F+ +      ++   ++ L+++ T  ++ L+G +L   +
Sbjct: 329 ASIKGVQHELLLAIGLVVLVTFVFLRTVPATIIPSIAVPLSLVATFGVMLLVGYSLNNLT 388

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  + +  G  VD  I++ E I       +    +   G  +   T+    ++ +   + 
Sbjct: 389 LMALTIATGFVVDDAIVMLENIARRMEDGEGPMEAALNGARQIGFTLVSLTVSLIAVLIP 448

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           L F G   G     FAIT+ ++I IS+  ++++   +    
Sbjct: 449 LLFMGDVVGKLFHEFAITLAVAIGISLVVSLTLTPMLCARF 489



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/227 (11%), Positives = 72/227 (31%), Gaps = 16/227 (7%)

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             + S       K   + +  Q         V++ +   + ++           V    +
Sbjct: 265 GPENSQLAAWSGKAPAILVNIQRQPGANVIEVVDRIHALLPQLRASMPAAVDVTVLSDRT 324

Query: 663 RELIRK-------GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
             +           ++ + +  +   +++         +     + L +  T G   L G
Sbjct: 325 ESIRASIKGVQHELLLAIGLVVLVTFVFL---RTVPATIIPSIAVPLSLVATFGVMLLVG 381

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N   + A+    G+ V+D +V+ + +    +         +       +     V  
Sbjct: 382 YSLNNLTLMALTIATGFVVDDAIVMLENI---ARRMEDGEGPMEAALNGARQIGFTLVSL 438

Query: 776 SMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++    ++P+   G   G +   FAI +A  I ++   S+ +   +
Sbjct: 439 TVSLIAVLIPLLFMGDVVGKLFHEFAITLAVAIGISLVVSLTLTPML 485



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 91/239 (38%), Gaps = 6/239 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L  ++    + Q     +   V   +      +    +  +++   +I   + ++   
Sbjct: 787  SGLARVETRPTALQVSHLGQFPAVTFSFNLAPGASLGEAVAAIEQAREDIGMPAGVELRL 846

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  R  +   +  ++ + + M I + + ++ +   +  ++TL       L    L 
Sbjct: 847  QGAAQAFRNSLSSTLWLILAAVLVMYIVLGVLYESFIHPVTILSTLPSATVGALAALLLS 906

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   +L AV  ++ LIG    + +++ D   +        ++ R+ I ++        + 
Sbjct: 907  GRSLDLIAVIGIILLIGLVKKNAIMMIDFALE--AEREQGLAPREAIHRAALLRFRPILM 964

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            T++AA  + +PM      G  +     + M  G+VV+   ++F    + LF      ++
Sbjct: 965  TTLAALFAAIPMMFASGSGAELRQPLGLVMVGGLVVSQVLTLFTTPVVYLFFVRLSRRH 1023


>gi|294675989|ref|YP_003576604.1| multidrug resistance protein MdtB [Rhodobacter capsulatus SB 1003]
 gi|294474809|gb|ADE84197.1| multidrug resistance protein MdtB [Rhodobacter capsulatus SB 1003]
          Length = 1022

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/536 (11%), Positives = 149/536 (27%), Gaps = 39/536 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L + +  +G             + ++P                         
Sbjct: 9   RRPVLSMVLGAFMLLLG-----FQAFMSLPVRQYPKVDETVVT---------ITTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+        +  +       +     ++++++       +    +V   +Q 
Sbjct: 55  APELIQGFITAPISAAVATTENIDYVTSTSMPSVSQVSVNMKLGADPDTALTEVLSKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  + +  ++V  T +  +++              + +  + R    ++       
Sbjct: 115 VRGELPSEAEDPVIVKGTGQTFALMY--LAAQNPNMTTEQLTEYLERVVRPRMSTISGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     T +++       N           ++  S   + 
Sbjct: 173 EIEVIGAANYAMRVWLDPMKLAARGVTASEVLAAIKASNYLAAPGKTENDYVAKSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +     G           +        +  
Sbjct: 233 TLQTPEAFGA--------------------LPIRAEGDAVVRLRDVAAVELASDDSGEIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +   T          +           +          S + 
Sbjct: 273 TFNGARGTFIGLSQTPSANPLDTAAAVRAELPKIAETLPEGMTIELVYDTTEQISASITE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +V++V+ + +   +   +   +I L+++  +A+L  LG ++ L ++  +V
Sbjct: 333 VFKTIAEAVAIVVVVILLFLGSIRSVAMPIVTIPLSLVGVMAVLLALGYSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G       +    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHMEEGMKPIPAAVQGMKEITGAVVAMTITLAAVLSPLAFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
              G   R FA T+  S+++S   A++I   M   I++              F   
Sbjct: 453 GVTGALFREFAFTLAGSVILSGVIALTITPMMSGRILKEGHATGFAAFVDRTFERF 508



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/137 (17%), Positives = 50/137 (36%), Gaps = 6/137 (4%)

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +            I T+ L +   +      G   NL  + A++  IG  V+D +VV + 
Sbjct: 349 LLFLGSIRSVAMPIVTIPLSLVGVMAVLLALGYSINLLTLLAMVLAIGLVVDDAIVVVEN 408

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           +    +     +       + + E  G  V  ++     + P+A  GG        FA  
Sbjct: 409 IH---RHMEEGMKPIPAAVQGMKEITGAVVAMTITLAAVLSPLAFTGGVTGALFREFAFT 465

Query: 801 MAFGIVVAASSSIFIAA 817
           +A  ++++   ++ I  
Sbjct: 466 LAGSVILSGVIALTITP 482



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 88/263 (33%), Gaps = 11/263 (4%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             I L          +  G   +   +   V LS V   +E+  +     Q        +
Sbjct: 743 YDIILQVPQDYRGNPEDLGRYFVRAASGEMVPLSSVVK-IETGSMASKVEQFNQLNSATI 801

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
             L      S      +  +  ++              +       L    ++    + +
Sbjct: 802 SALPIPGQSSGDGLAAIIQIANEVMPEGFFLDYSGQSRLEQTQGNTL----MIAFAAAVL 857

Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + + +  +F+ +      + ++ L I   +    L     N+ +   ++TLIG      
Sbjct: 858 VIYLVLAAQFESFRDPFIILMSVPLTIFGAVLPLNLGLGTLNIYSQVGMITLIGLITKHG 917

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
           +++ +    N +     ++ +D I  +    L   + T+ A  ++V+P+ +    G +  
Sbjct: 918 ILMVE--FANQQREHHGLNRQDAIVLAAKTRLRPILMTTAAMALAVVPLVIADGAGAAAR 975

Query: 795 GSFAIPMAFGIVVAASSSIFIAA 817
            +  I M  G+++    ++F+  
Sbjct: 976 EAMGIVMFSGLLIGTMFTLFVVP 998


>gi|330950911|gb|EGH51171.1| acriflavin resistance protein [Pseudomonas syringae Cit 7]
          Length = 1034

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/500 (13%), Positives = 141/500 (28%), Gaps = 37/500 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPIAPLPEAEFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       +TL F  ++  +  A +V   +     +L  D              S
Sbjct: 82  TQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADLPSLPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL  +    +I    E S         Q+   E   Q   + +    +  +  P +L  
Sbjct: 142 PVLILSVSSSLIPG-TELSDVTETILARQLSQIEGVGQVYITGQQRPAIRVQAAPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L  T A +                              +          ++  ++N    
Sbjct: 201 LGLTLADIRQAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                         +   +   T
Sbjct: 241 KPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V          S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRIQRELPRLQEMLPASVDVSVLNDRTRTIRASLHEVELTLLIAVLLVVAVMALFLRQL 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            Q +  +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMK 521
            ++++   +    +R     
Sbjct: 481 VSLTLAPTLAALFMRAPTHH 500



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPASVDVSVLNDRTRTIRASLHEVELTLLIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 78/203 (38%), Gaps = 6/203 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   ++I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVSMLDQAKNEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  V+ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGVVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               ++  + I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLTPHEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               ++F    I L +     +  
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHRRQ 1022


>gi|71736280|ref|YP_273463.1| RND efflux transporter [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71556833|gb|AAZ36044.1| RND efflux transporter, AcrB/AcrD/AcrF family [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 1034

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/500 (13%), Positives = 140/500 (28%), Gaps = 37/500 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPIAPLPEAEFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       +TL F  ++  +  A +V   +     +L  D              S
Sbjct: 82  TQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADMPSLPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL   ++   +    E S         Q+   E   Q   + +    +  +  P +L  
Sbjct: 142 PVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L  T A +                              +          ++  ++N    
Sbjct: 201 LGLTLADIRLAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                         +   +   T
Sbjct: 241 KPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V          S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRIQRELPRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQL 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            Q    +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GQGTREAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVI 480

Query: 502 TAISIVRAMMIFIIRYKKMK 521
            ++++   +    +R     
Sbjct: 481 VSLTLAPTLAALFMRAPTHN 500



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGTR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVIVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 79/202 (39%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   ++I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVSMLDQAKKEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  ++ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGIVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               +S ++ I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLSSQEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     K 
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHKR 1021


>gi|162149136|ref|YP_001603597.1| multidrug resistance protein mdtB [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209545120|ref|YP_002277349.1| acriflavin resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161787713|emb|CAP57309.1| putative multidrug resistance protein mdtB [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532797|gb|ACI52734.1| acriflavin resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 1054

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/614 (11%), Positives = 150/614 (24%), Gaps = 40/614 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GLL      +       +P+                         
Sbjct: 10  RPVATTLLMLAIMLAGLLGYHFLPVSALPQVEYPTIT--------------VQTFYPGAG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + +TL F  S   +    +V   +   
Sbjct: 56  PDVMATSVTAPLETQFGQMPGLDQMTSQSSGGASVVTLRFGLSMSMDVAEQEVQAAINEA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D     +        + VL+   I        E    +  +   +I        
Sbjct: 116 QMLLPTDLPAPPIYAKVNPADTPVLT-LGITSKTLPLTEVEDYVYTRLAQKISQISGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +  +L         +       N +     F       +      
Sbjct: 175 VTLSGGNRKAIRVRVNVPKLTSFGVDMDTLRTTIGNVNVNSPTGTFDGAQRASTLRVDGQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++    +                        +          + +          
Sbjct: 235 ISGVDQLLNQVIA--------------------YQDSGPVRIRDVATVVQGPENTQLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++        L+    P                S +  
Sbjct: 275 SNRTPALVLNVQRQPGANVIAVVDNIKYALPQLQQALPPGISITPLTDRTTTIRASVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV+ V+F+ +      ++   S+ L+++ TLA + LLG +L   S+  + +
Sbjct: 335 EFELVLAMALVVAVIFVFLRNVPATIIPSLSVPLSLVGTLAAMYLLGFSLDNLSLMSLTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I            +   G      TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENISRYIEAGDDRMTASLKGSGEIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I++S   ++++V  M   ++  +              +     +
Sbjct: 455 VVGRLFHEFAITLSVTIILSAVVSLTLVPMMCARLLSER--PHGPDAKGWSATVERWTES 512

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           +     R   V +        + +           F       V     V    V +   
Sbjct: 513 VIAAYGRALTVVLRHQPLTLLVFVCTLVLTGVLAWFIPKGFFPVQDTGVVQGISVMAQST 572

Query: 600 SLQIGDISFQNFDG 613
           S        Q    
Sbjct: 573 SFDAMSTHQQALGD 586



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 86/243 (35%), Gaps = 10/243 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+A +      +R     +Q  + +       +   + L  Q         V++ +K  
Sbjct: 244 QVIAYQDSGPVRIRDVATVVQGPENTQLAAWSNRTPALVLNVQRQPGANVIAVVDNIKYA 303

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIWIRFK-WYFALGAI 697
           + ++        +       +  +          ++++   ++  I++  +     +   
Sbjct: 304 LPQLQQALPPGISITPLTDRTTTIRASVADVEFELVLAMALVVAVIFVFLRNVPATIIPS 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ L +  TL    L G   +  ++ ++    G+ V+D +V+ + +    +        
Sbjct: 364 LSVPLSLVGTLAAMYLLGFSLDNLSLMSLTIATGFVVDDAIVMIENI---SRYIEAGDDR 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                K   E     +  +++    ++P+   G   G +   FAI ++  I+++A  S+ 
Sbjct: 421 MTASLKGSGEIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLSVTIILSAVVSLT 480

Query: 815 IAA 817
           +  
Sbjct: 481 LVP 483


>gi|254693073|ref|ZP_05154901.1| Acriflavin resistance protein [Brucella abortus bv. 3 str. Tulya]
 gi|261213308|ref|ZP_05927589.1| acriflavin resistance protein [Brucella abortus bv. 3 str. Tulya]
 gi|260914915|gb|EEX81776.1| acriflavin resistance protein [Brucella abortus bv. 3 str. Tulya]
          Length = 1043

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 157/547 (28%), Gaps = 43/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++  +I   GL            +   P       I++  D  G         
Sbjct: 17  RRPVFAFVINILIVVAGLAA-----FTGVDIRELPDVDRP-VITISTDFSG--------A 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +    ++++T+ F D       A  +   +  
Sbjct: 63  SAETIDRQVTQVLENAVARVSGVKSSSSTSSFERSRVTMEFNDGVDLNVAAADMRDAISR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +   + ++        ++      D       + ++ +  Q  D +       
Sbjct: 123 VANNLPEEADPSRIIKADSNADPVMRLAVTSD--TMAVDDMTVLVEDQIEDVLSAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D +RL     T A +S                            
Sbjct: 181 DVQINGDRDKIFRIDIDQARLASYGLTIADISNALSSMGLDAPAGSLRSSDQSIVVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +   +++ G T                               +     +     
Sbjct: 241 NLEKPEDFENVYIKGRTQI------------------------RDVATVTLGPDIESSAV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +          +AQ +     +      A L+          V   +     G+   
Sbjct: 277 RSNSKTAIGLGIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V+ ++FM +   +  L+   S+ + +I T+A + L+G ++ + ++  +V
Sbjct: 337 VEIALIASVIIVVAIIFMFLWDARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E +     +      +  +G    +  +  + +T     V + F  
Sbjct: 397 LATGLVVDDAIVVLENVVSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLP 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG    F   + +++L+S   A+++   +    ++              F       
Sbjct: 457 GQAGGLFHEFGFVLAIAVLLSSVVALTLCPMLASRFLKEASATVESEGHGPLFLRRIGGG 516

Query: 539 AIQFMRA 545
              F R 
Sbjct: 517 LANFYRK 523



 Score = 65.9 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 73/220 (33%), Gaps = 14/220 (6%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VI 674
             + + Q    D     R      +K         + + +      +   +   ++  VI
Sbjct: 287 GIVRQAQSNTLDISQGVRAAVANLQKTLPEGVSIAVTSDDANFINGAIHEVEIALIASVI 346

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           I    + +++W        L    ++ + +  T+    L G   N+  + A++   G  V
Sbjct: 347 IVVAIIFMFLW---DARATLIPALSMPVALIGTIAAIYLVGFSVNILTLLALVLATGLVV 403

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +   +      +  R        E     + T++      +P++      G
Sbjct: 404 DDAIVVLENV---VSRRNQGMGPRAAAVLGTQEVFFAVIATTLTLAAVFVPISFLPGQAG 460

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   F   +A  +++    S  +A  +   +     K A
Sbjct: 461 GLFHEFGFVLAIAVLL----SSVVALTLCPMLASRFLKEA 496



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 69/164 (42%), Gaps = 7/164 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +    + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L
Sbjct: 861  IVFGFAIVIILLVLAAQFESFISALIVMATVPLGLGCAVFAMILTGTSLNVYSQIGLVLL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +      +L    ++ R+ I+++ N  L     T + A +  +P+ + 
Sbjct: 921  VGIMAKNGILIVEFA---DQLRDKGLNVREAIEEAANIRLRPVCMTMICAVLGGVPLVLA 977

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G     +    +  G+ +A  +++++     L +  +    
Sbjct: 978  SGAGAEARVALGWVIVGGLGLATIATLYVTPVAYLLLGRFTKPK 1021


>gi|307719837|ref|YP_003875369.1| acriflavine resistance protein [Spirochaeta thermophila DSM 6192]
 gi|306533562|gb|ADN03096.1| acriflavine resistance protein [Spirochaeta thermophila DSM 6192]
          Length = 1063

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/631 (13%), Positives = 184/631 (29%), Gaps = 47/631 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + I+++++   GL            +D +P   P   +                  
Sbjct: 10  RPTTIAIVFALLVGFGLYTI-----TNIAIDLYPEITPPVLV---------VSTSYAGAG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    + + S +        +  +  + + L F         A+ V   L+ V
Sbjct: 56  PEEVEKVITRPLESVLSNVTNLKRITSTSSEGSSMLILEFTYGTDMAEAANSVRDNLEFV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  +    ++       I I+      ++      + +         ++  +E    
Sbjct: 116 KDALPEEAGTPMIFKFNPSIIPILRLTVEGNRSQEELRKLAE---DYIAPRLEQTEGVAM 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   +  +  +    RL     T  +++      N    G       +         
Sbjct: 173 ASVSGGRIPVVRVDVHLDRLEAYGITLTQIATMLRTQNVQLAGGRMTENRINYLIRTAGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                EIS   +   T        + V  +                ++            
Sbjct: 233 FHTIEEISRAVVGYKTGQPSGGMPRVVPVLLR-----------DVADVSMGYRTTDTMVF 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            ++  +     + A    A ++          +      +   + S  
Sbjct: 282 VNGKPSVSISVLKQSGTNSVQVADRAKERIAEIQRDLPRDVKITITRDTTESIRAALSQV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L ++VLF+ +   K  L+   +I ++V++ LA L   G TL L ++ G+ L
Sbjct: 342 SSSAVNGAILAMLVLFLFLRSVKPTLIVGLAIPISVVIALAALYFAGITLNLMTLTGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD++I++ E I     K      S  +G     + I  S +T +   + +  F  
Sbjct: 402 GIGMLVDNSIVILENIFRYREKGAKPHISAILGTQEMITAITASTLTTVAVFLPIAIFQS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID------------ 524
                G      A T+ +S+L S+  A+ +V  +    +     K               
Sbjct: 462 ELETIGELFADLAFTVVISLLSSLAVALLLVPVLSSHYLPLTTRKEKPLRGILKGLDGIL 521

Query: 525 -INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    +    ++      +   + +  LF + ++ +               + + V
Sbjct: 522 ARFFSWLEEVYGRGLSWTLRHRKTTILAVLALFVLAAVQIPRVGFEYLPEQEADSVTVQV 581

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                  + V R  LE LQ    S      +
Sbjct: 582 ELPLGTSVEVTREVLEQLQEIVKSEVKGYQD 612



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 61/204 (29%), Gaps = 9/204 (4%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           + F N     +  V  Q          R  E + +   ++     I  T      I   L
Sbjct: 279 MVFVNGKPSVSISVLKQSGTNSVQVADRAKERIAEIQRDLPRDVKITITRDTTESIRAAL 338

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            +     V  + +AML+           L     + + +   L      GI  NL  +  
Sbjct: 339 SQVSSSAVNGAILAMLVLFLFLRSVKPTLIVGLAIPISVVIALAALYFAGITLNLMTLTG 398

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   IG  V++ +V+ + +    +                 E +     +++      LP
Sbjct: 399 LALGIGMLVDNSIVILENI---FRYREKGAKPHISAILGTQEMITAITASTLTTVAVFLP 455

Query: 786 MAVWG------GSVIGSFAIPMAF 803
           +A++       G +    A  +  
Sbjct: 456 IAIFQSELETIGELFADLAFTVVI 479



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 68/161 (42%), Gaps = 7/161 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             K ++ ++++   +   +  +F+ +      + T+ L +   +G + L G  F+L     
Sbjct: 876  TKFVLILLVAVFLVFGIMASQFESFLDPFIILFTIPLSLIGIVGIYLLTGEIFSLFTAVG 935

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L G  VN+ +V+ D       L   ++   D   ++    L   + T++   + + P
Sbjct: 936  LVILAGIVVNNGIVLVD---YTNLLRKRNLPLFDACVEAGKNRLRPVLMTTLTTVLGLTP 992

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            +A     G S+I   A  +  G+ V+   ++F+   I    
Sbjct: 993  LAFTRGEGMSLIQPIAQTVVGGLSVSTLFTLFLIPVIYSIF 1033


>gi|167752129|ref|ZP_02424256.1| hypothetical protein ALIPUT_00371 [Alistipes putredinis DSM 17216]
 gi|167660370|gb|EDS04500.1| hypothetical protein ALIPUT_00371 [Alistipes putredinis DSM 17216]
          Length = 1043

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/653 (10%), Positives = 169/653 (25%), Gaps = 27/653 (4%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
             ++++P   P                     + + VN  +     +    +        
Sbjct: 30  LPIEQYPDITPPVVE---------VSTTYPGADAETVNNAVATPVSQSIMGVSDMLYMQA 80

Query: 90  SMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
           +     +  + ++F         A      +    S+L     +  + T       +++ 
Sbjct: 81  TSANDGSMNLQVTFDIGSDPNMDAIFTQNNVSTALSQLPASVTQQGVTTRKTMTGFLIVY 140

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                         S        +++   +   +          +     P  L     +
Sbjct: 141 SLTS-DGRYTGDFLSNYAYINIQNELLKIDGVGKVDIMGAGEYAMRIWLKPDLLDYYKIS 199

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
             ++               FG           Y V    +I                 + 
Sbjct: 200 LDEVFAAVEAQGGIFPAGKFGGEPAAGDVTYTYTVTMPPQI-------------YDAEQF 246

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
              I        +       ++           +  +      +   +   +      + 
Sbjct: 247 GDIIISTTPEGEQVRLSDIADVALGSRQYGVESLFNSDPTALLVIYQQPGSNAVDVGNSV 306

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                 L                  +          T  I   LV+ ++F+ +   +  L
Sbjct: 307 KAEMERLSKRFPDGITYTSMVDATTSIEAGVKDIFVTLIIALILVIAIIFLFLQDWRATL 366

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   +I +++I   AL  LLG ++ + S+ G+VL IGL VD  I+V E ++    K  S 
Sbjct: 367 IPLLAIPVSIIGAFALFPLLGFSINIISLLGMVLAIGLVVDDAIVVVEAVQVNIEKGLSA 426

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAIS 505
             +         S I  + +  L   + + F G       + F+I++ +S+ IS F A++
Sbjct: 427 KQATVEAMHSVSSPIVATTVVLLAVFIPVSFMGSITGLLFQQFSISIAVSVCISSFNALT 486

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           +  A+   +++ +             +             RF G        +       
Sbjct: 487 LSPALCALLLKPRPKVQKGFFAAFNRWFGKRTEEYTSATTRFIGHLKRTGGIVAVTLAAI 546

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
               ++        +        V      S   +++      +      +         
Sbjct: 547 AVIWHFLPSGFLPDEDQGYVMVFVQTPEASSLQTTVKAMQRVDELVRQRPDVEATSFAAG 606

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + +A           +  +      + +  +   ++ EL       V  + I
Sbjct: 607 FNMLAGIASSNSGIIFVKLVDYSQRSKTSSQIASALTEELYVAVPEAVSYAFI 659



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 55/448 (12%), Positives = 144/448 (32%), Gaps = 8/448 (1%)

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           A  +     I+ ++ +  + AT        + +   +  D N+         +     + 
Sbjct: 60  AVATPVSQSIMGVSDMLYMQATSANDGSMNLQVTFDIGSDPNMDAIFTQNNVSTALSQLP 119

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            S+         T+    I   + +   +     +   +       + I     + I+ A
Sbjct: 120 ASVTQQGVTTRKTMTGFLIVYSLTSDGRYTGDFLSNYAYINIQNELLKIDGVGKVDIMGA 179

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
               +  + K   +D   +S   +     A   +       G      +     +     
Sbjct: 180 GEYAMRIWLKPDLLDYYKISLDEVFAAVEAQGGIFPAGKFGGEPAAGDVTYTYTVTMPPQ 239

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            Y  +  G I +              +++            F+ +   L+ +  QPG + 
Sbjct: 240 IYDAEQFGDIIISTTPEGEQVRLSDIADVALGSRQYGVESLFNSDPTALLVIYQQPGSNA 299

Query: 630 AQ--TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                 V   +++         T  +       I   +    +  +I   + + I     
Sbjct: 300 VDVGNSVKAEMERLSKRFPDGITYTSMVDATTSIEAGVKDIFVTLIIALILVIAIIFLFL 359

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L  +  + + I      F L G   N+ ++  ++  IG  V+D +VV + ++ N
Sbjct: 360 QDWRATLIPLLAIPVSIIGAFALFPLLGFSINIISLLGMVLAIGLVVDDAIVVVEAVQVN 419

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
           +      +S +    ++++      V T++      +P++  G   G +   F+I +A  
Sbjct: 420 I---EKGLSAKQATVEAMHSVSSPIVATTVVLLAVFIPVSFMGSITGLLFQQFSISIAVS 476

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + +++ +++ ++  +   +   R K  +
Sbjct: 477 VCISSFNALTLSPALCALLLKPRPKVQK 504



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 79/215 (36%), Gaps = 10/215 (4%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + L   P   V+  + ++ ++    +++P +       +  +        G V ++    
Sbjct: 816  IELTVNPAAKVSTGQAMDAIEAVAADVLPEAVGTTWSGLSYQEKTASGSSGAVYLLAIVF 875

Query: 679  AMLIYIWIRFKWYFALGAITTLILDITKTL---GFFALFGIEF--NLTAVAAVLTLIGYS 733
              L    +   W   L  + ++ L +   L   G   L   EF  N+    +++ LIG S
Sbjct: 876  VFLTLSALYNSWGLPLAILLSVPLAVLGALLFVGAAYLVSPEFINNIYMQISLVMLIGLS 935

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + ++V +    +   +  ++  +    ++    +   + T+ +  + V+P+    G  
Sbjct: 936  AKNAILVVE--YADQLFFEKNMDLKAATIEAARLRMRPIMMTAFSFILGVMPLIFASGVY 993

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                    + +  G+++A    IFI   +   +  
Sbjct: 994  ATARNIMGMALVGGMLLATMLGIFIYPALYYLVAR 1028


>gi|91977042|ref|YP_569701.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
 gi|91683498|gb|ABE39800.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
          Length = 1041

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/624 (10%), Positives = 162/624 (25%), Gaps = 49/624 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L   +   GLL           +   P                   +   L 
Sbjct: 9   RRPIATSLLGVALLIGGLL-----GYFSLPVSALPQVDFPT-----------VQVTTQLP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D V   +    +     +        +     ++++L F  +R  +     V   +
Sbjct: 53  GASPDVVASLITAPLERQLGQIPSLTAMTSTSSLGVSQVSLQFDLNRDIDGATQDVQAAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  +              + V++   +          S         ++     
Sbjct: 113 NAAAGILPKNLPYPPTYAKVNPADAAVMT-LALTSTTVSLRSMSDLADTILAQRLAQISG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +      +   +  + D +RL     +   +                         G 
Sbjct: 172 VGRVSVLGGLKPAVRVQADLARLAAYGISMEDLRTAIA--------------------GA 211

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                              AN           I                 I   L     
Sbjct: 212 NVSGPKGSLDGAQQAYTIAANDQIGAADAYKSIIVAYRNGSPVTIGDVAQIIDGLENNRT 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G               +   +    +         L+          V          S 
Sbjct: 272 GAWYQGTPAVILDIQRQPGANVIDAVRGIRNEIPKLQRMIPAGVKLTVVSDRTETIRASV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  + T  +  GLV +V+ + +   +  ++A  ++ L++I +  ++   G +L   S+  
Sbjct: 332 NDVQFTLLLSVGLVTLVVLLFLRSMRATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + +G G  VD  I++ E I     + +S   +   G S    T+    ++ +   + L F
Sbjct: 392 LTIGTGFVVDDAIVMIENIVRHMEEGESPMQAALSGASEIGFTVISLTMSLIAVFIPLLF 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-------KKMKSIDINPLS 529
                G   R FA+T+ ++++ S   ++++   M   ++++         + +I      
Sbjct: 452 MSGLVGRMFREFALTLTIAVVTSAVVSLTLTPMMCSRLLKHAGEERRVPGLATISGWIDR 511

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R R   V   +  +   +  +        +     I     A + V
Sbjct: 512 GAEAYHRSLLWVLQRQRATLVVTFLTIAATGVLYVIAPKGFLPLQDTAAITAVTEAGQDV 571

Query: 590 DLSVVRSNLESLQIGDISFQNFDG 613
             + +++   +      +  +  G
Sbjct: 572 SFAEMQARQSAAADAIKADPDVVG 595



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 53/149 (35%), Gaps = 6/149 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSMRATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      S         +E     +  +M+     +P+    G V      FA+ +   
Sbjct: 411 VRHMEEGESPMQAALSGASEIGFTVISLTMSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +V +A  S+ +   +   +     +  R+
Sbjct: 471 VVTSAVVSLTLTPMMCSRLLKHAGEERRV 499



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 75/220 (34%), Gaps = 6/220 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V  S +  L+            +   V L +      +    +  +K   T I    +
Sbjct: 779 AQVPISAVAELKRTTAPLVISHQAQFPSVALSFNLAPGASLGEAVNEIKVIETRIGMPGS 838

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTL 708
           I            + +   +  ++ + + + I + + ++ +     I + +    +   L
Sbjct: 839 IVGVFYGDAAEFSKSLSGQVWLILAALVTIYIVLGVLYESFIHPITILSTLPSAGVGAIL 898

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               LFG + ++  +  ++ L+G    + +++ D   +        +S  D I ++    
Sbjct: 899 ALM-LFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALE--AERARGMSSYDAIVQACLLR 955

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               + T++AA    LP+AV           P+   I+  
Sbjct: 956 FRPIMMTTLAALFGALPLAV-ESGTGSELRFPLGISIIGG 994


>gi|110635129|ref|YP_675337.1| acriflavin resistance protein [Mesorhizobium sp. BNC1]
 gi|110286113|gb|ABG64172.1| acriflavin resistance protein [Chelativorans sp. BNC1]
          Length = 1040

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/516 (11%), Positives = 152/516 (29%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++ ++I   GL       + +      P                      +  
Sbjct: 19  RRPVFAFVINTLIVVAGLAALFGVEVRELPDVDRPVIS--------------VTTTFDGA 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        S    ++++T+ F ++      A  V   +  
Sbjct: 65  AAETIDREITAAVEGAVARVPGVSAISSSSSFGRSRVTIEFRETVDLNAAASDVRDAVGR 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  D    ++V   +   +I+      D    +  + ++ +  + +D++       
Sbjct: 125 IQNQLPEDADAPIVVKADDNADAIMRLAVTSD--RMNIEDMTLYVDDEIVDKLAAVPGVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D SRL     T   ++                            
Sbjct: 183 DVQVYGDRTKIFRVDIDQSRLASHGMTVGDIASAVETVAFDSPAGSLTSNTQDLIVRATS 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E+  I L+                                  +           
Sbjct: 243 SITTPEEMENIKLSPN------------------------VRLGDVATVTLGPDEGESRL 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                +        +AQ +     E        L           +   +     G+   
Sbjct: 279 RTNGQLGIGLGIVRQAQSNTLEISEGVRQAVDDLAKTMPEGMSISITSDDAIFINGAIHE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   +VL V+++ +   +  ++   +I + +I T+A + L+G ++ + ++  +V
Sbjct: 339 VEIALLISVTIVLGVIYLFLRDWRATIIPGIAIPVALIGTIAAIYLVGFSVNILTLLALV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E I     +      +  +G    +  +  +  T +   V L F  
Sbjct: 399 LATGLVVDDAIVVLENIVRRRNQGMGPRAAAVLGTQEVFFAVIATTATLIAVFVPLSFLP 458

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              GG  + F   +  ++L+S   A+S+   +   +
Sbjct: 459 GQAGGLFKEFGFVLAFAMLLSSVVALSLCPMLASRM 494



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 83/241 (34%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +  +  V L  V +       G+   +        L  ++    +++  +  +      +
Sbjct: 253 IKLSPNVRLGDVATVTLGPDEGESRLRTNGQLGIGLGIVRQAQSNTLEISEGVRQAVDDL 312

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLI 701
            + +P     +            I +  + ++IS   +L  I      W   +     + 
Sbjct: 313 AKTMPEGMSISITSDDAIFINGAIHEVEIALLISVTIVLGVIYLFLRDWRATIIPGIAIP 372

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T+    L G   N+  + A++   G  V+D +VV + +   ++     +  R   
Sbjct: 373 VALIGTIAAIYLVGFSVNILTLLALVLATGLVVDDAIVVLENI---VRRRNQGMGPRAAA 429

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                E     + T+       +P++      G +   F   +AF +++++  ++ +   
Sbjct: 430 VLGTQEVFFAVIATTATLIAVFVPLSFLPGQAGGLFKEFGFVLAFAMLLSSVVALSLCPM 489

Query: 819 I 819
           +
Sbjct: 490 L 490



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 68/164 (41%), Gaps = 7/164 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               +     + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   
Sbjct: 855  NSMLTTFGFALVIILLVLGAQFESFVSALIIMATVPLGLACAVFALLLTGTSLNVYSQIG 914

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G    + ++V +      +L    +  R+ ++++    L   + T +   +  +P
Sbjct: 915  LVLLVGIMAKNGILVVEFAN---QLRDRGLKVREAVEQAALIRLRPVMMTMICTVVGGVP 971

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + +    G     +    +  G+ ++A S++++     L +  +
Sbjct: 972  LVLASGAGAEARIALGWVIVGGLGLSALSTLYLTPVAYLLLGRF 1015


>gi|330975765|gb|EGH75831.1| acriflavin resistance protein [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 1034

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/500 (13%), Positives = 141/500 (28%), Gaps = 37/500 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPIAPLPEAEFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       +TL F  ++  +  A +V   +     +L  D              S
Sbjct: 82  TQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADLPSLPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL  +    +I    E S         Q+   E   Q   + +    +  +  P +L  
Sbjct: 142 PVLILSVSSSLIPG-TELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L  T A +                              +          ++  ++N    
Sbjct: 201 LGLTLADIRQAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                         +   +   T
Sbjct: 241 KPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V          S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRIQGELPRLQEMLPASVDVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQL 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            Q +  +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMK 521
            ++++   +    +R     
Sbjct: 481 VSLTLAPTLAALFMRAPTHH 500



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 89/250 (35%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ ++ ++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQGEL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPASVDVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 78/202 (38%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   ++I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVRMLDQAKNEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  V+ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGVVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               ++  + I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLTPHEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGSELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     + 
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHRR 1021


>gi|302186070|ref|ZP_07262743.1| acriflavin resistance protein [Pseudomonas syringae pv. syringae
           642]
          Length = 1034

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/500 (13%), Positives = 141/500 (28%), Gaps = 37/500 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPIAPLPEAEFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       +TL F  ++  +  A +V   +     +L  D              S
Sbjct: 82  TQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADLPSLPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL  +    +I    E S         Q+   E   Q   + +    +  +  P +L  
Sbjct: 142 PVLILSVSSSLIPG-TELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAV 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L  T A +                              +          ++  ++N    
Sbjct: 201 LGLTLADIRQAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                         +   +   T
Sbjct: 241 KPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V          S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRIQRELPRLQEMLPASVDVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQL 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            Q +  +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMK 521
            ++++   +    +R     
Sbjct: 481 VSLTLAPTLAALFMRAPTHH 500



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPASVDVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 78/202 (38%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   ++I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVRMLDQAKNEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  V+ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGVVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               ++  + I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLTPHEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     + 
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHRR 1021


>gi|190573999|ref|YP_001971844.1| putative transmembrane ACR-type efflux transport protein
           [Stenotrophomonas maltophilia K279a]
 gi|190011921|emb|CAQ45542.1| putative transmembrane ACR-type efflux transport protein
           [Stenotrophomonas maltophilia K279a]
          Length = 1173

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/593 (11%), Positives = 163/593 (27%), Gaps = 54/593 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + +    +   GL+      L    ++  P                         
Sbjct: 31  RRRVTIAMCTVTLLLFGLIA-----LGNLKVNLLPDLSYPTLT---------VRTEYTGS 76

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 77  APTEIETLITQPVEEAVGVVKNLRKLKSVSRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 136

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +N  L ++ K  +L+        I+       ++  +    +                ++
Sbjct: 137 LN--LPLEAKAPVLLRFNPSTEPIMRLVLSNKVAPTSDADAVRELTGLRRYADEDLKKKL 194

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 195 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDTVIKRLKDENINISGGRLEEGSQR 254

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE------------------ 276
                     D  EI  + +    +N            +                     
Sbjct: 255 FLVRTVNQFADLEEIRNLLVTTQGSNGSAADSALQQMFNIAASTGSAAAIAAASAAQSAS 314

Query: 277 --------MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                                + +          L      +     +   +   T E  
Sbjct: 315 SGAGSSVVANGVPVRLKDVATVRQGYKEREAVIRLGGKESVELAIYKEGDANTVSTAEAL 374

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                 ++            E        + +  K    I   L ++++F+ +  G    
Sbjct: 375 RKRLEQIKGTFPSDVEMTTIEDQSRFIEHAIADVKKDAVIGGLLAILIIFLFLRDGWSTF 434

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           V   S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +   +
Sbjct: 435 VISLSLPVSIIATFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLGI 494

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAIS 505
             +  +G       +  S +T +   + L F     G   R  A+T+ ++I IS+  +++
Sbjct: 495 LQAAIVGTREVSMAVVASTLTTIAVFLPLVFVDGIAGQLFRDQALTVAIAIAISLLVSMT 554

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           ++  +     + +   +      +  +   +         R   V  +     
Sbjct: 555 LIPMLSSL--KGRPPLAFPEEAPNEPWQPQNRWQKPVALGRRGAVATARWSFY 605



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 7/217 (3%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +  +           + + +++          +   E     I   +       
Sbjct: 353 ESVELAIYKEGDANTVSTAEALRKRLEQIKGTFPSDVEMTTIEDQSRFIEHAIADVKKDA 412

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           VI   +A+LI        +       +L + I  T  F    G+  N+ ++  +    G 
Sbjct: 413 VIGGLLAILIIFLFLRDGWSTFVISLSLPVSIIATFFFMGQLGLSLNVMSLGGLALATGL 472

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            V+D +VV + +    K     +           E     V +++      LP+      
Sbjct: 473 VVDDSIVVLESI---AKARERGLGILQAAIVGTREVSMAVVASTLTTIAVFLPLVFVDGI 529

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G +    A+ +A  I ++   S+    P+L  +   
Sbjct: 530 AGQLFRDQALTVAIAIAISLLVSM-TLIPMLSSLKGR 565



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 75/213 (35%), Gaps = 8/213 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +  +       +    ++  +  +     D      + E+ +    + +      +  
Sbjct: 912  DAVADVVATTGPSEIHRADQTRVAVVSANLRDIDLGAAMREVQQMVSEQPLGAGVGLHIG 971

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++   +  I    ++   + + +  +F+        + T+ L +   +    L 
Sbjct: 972  GQGEELAQA-AKSLIFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLALVGAILALMLT 1030

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+G    + +++ D++    +L    ++  + + +     L   + 
Sbjct: 1031 GKPISVVVFIGLILLVGLVTKNAIILIDKVN---QLREAGVAKHEALVEGARSRLRPIIM 1087

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            T++      LP+AV    G  V    AI +  G
Sbjct: 1088 TTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1120


>gi|317404387|gb|EFV84807.1| AcrB/AcrD/AcrF family protein [Achromobacter xylosoxidans C54]
          Length = 1036

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 152/550 (27%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+L      +        P+                    L    
Sbjct: 10  RPVATTLLSLAVVLAGMLSFFLLPVAPLPQMDIPTIS--------------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S  Q   ++TL F  SR     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGSIAGVTEMTSSSSQGSTRVTLQFDLSRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    + N     +    + +++   +        +           ++   +   +
Sbjct: 116 RSLLPTSLRSNPTYHKSNPSDAPIMT-LAMTSDTLSQGQMYDLASTIVAQKLSQVDGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +     P  L     +  ++                              
Sbjct: 175 VTVGGSSLPAVRVTVLPGALANRGVSLDEVRTALAN--------------------ANAN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V  +  +      N      +    +                 +   +  +     
Sbjct: 215 RPKGVLENDQYHWQIMVNDQLSRAEQYRPLIVAWRDGAPVRVSDVARVEDSVEDLFQTGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +A  +   T++        L A         V +    +   S    
Sbjct: 275 YNQRNAILMIVRRQADANIIETVDAVRAQLPTLLALMPADVQLTVAQDRTPSIRASLHEA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+ + +   +  ++   ++ +++I T  ++ L G TL   S+  +++
Sbjct: 335 ELTLIIAVGLVVLVVLLFLRRWRAAIIPSVAVPVSLIGTFCIMYLCGFTLNTISLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I        S   +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIMRHVENGMSPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+  SI++S+  ++++   M   +++ +  +      L+R+        
Sbjct: 455 VAGRLFREFAVTLSASIMVSLVVSLTLTPMMCARLLKAEPKEPKPPGRLARWAERGFDWM 514

Query: 540 IQFMRARFWG 549
               R     
Sbjct: 515 QDGYRRSLAW 524



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 84/245 (34%), Gaps = 6/245 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V R       +    F N       +VR Q           V   +   +  +     
Sbjct: 257 SDVARVEDSVEDLFQTGFYNQRNAILMIVRRQADANIIETVDAVRAQLPTLLALMPADVQ 316

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +   +   P I   L    +  +I   + +L+ +    +W  A+     + + +  T   
Sbjct: 317 LTVAQDRTPSIRASLHEAELTLIIAVGLVVLVVLLFLRRWRAAIIPSVAVPVSLIGTFCI 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             L G   N  ++ A++   G+ V+D +VV + +   M+     +S      +   E   
Sbjct: 377 MYLCGFTLNTISLMALIVATGFVVDDAIVVLENI---MRHVENGMSPMRAALRGSREVGF 433

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     +P+ + GG        FA+ ++  I+V+   S+ +   +   +    
Sbjct: 434 TVLSMSLSLVAVFIPILLMGGVAGRLFREFAVTLSASIMVSLVVSLTLTPMMCARLLKAE 493

Query: 828 AKNAR 832
            K  +
Sbjct: 494 PKEPK 498



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 96/263 (36%), Gaps = 7/263 (2%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
              +  D +   Q+ V+ +    + +            +S Q+        V     PG S
Sbjct: 758  QRFAQDIESLKQVEVITSTGARVPMAAFARFENANAPLSVQHQGLFVADTVSFSLAPGVS 817

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            + Q             +         +     + + L ++  + ++ + + M I + I +
Sbjct: 818  LGQATAAIDAAVARIGLPSDQIQAGFQGTAAVLQQTLAQQPWL-ILAALVTMYIVLGILY 876

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + +   L  ++TL       L    L   +F L A+  V  LIG    + +++ D   + 
Sbjct: 877  ESFVHPLTILSTLPSAGLGALLALLLVRTDFTLIALIGVFLLIGIVKKNAIMMVDFALE- 935

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                   ++ R+ I ++        + T+MAA    LP+ +    G  +     I +  G
Sbjct: 936  -AERNQHMAPREAIFQACLTRFRPIMMTTMAAIFGALPLVLATGAGVEMRQPLGITIVGG 994

Query: 805  IVVAASSSIFIAAPILLFIYDWR 827
            +V++   +++    + L++  +R
Sbjct: 995  LVLSQILTLYTTPVVYLYLDRFR 1017


>gi|46201394|ref|ZP_00055165.2| COG0841: Cation/multidrug efflux pump [Magnetospirillum
           magnetotacticum MS-1]
          Length = 992

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/542 (11%), Positives = 151/542 (27%), Gaps = 25/542 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + V   +    +     +    +   +  Q  + +TL F  S+  +  ++
Sbjct: 16  VTTQLPGASAETVATLITTPLERQFGLIPGLAVMTSTSSQGTSALTLQFDLSKSIDVASE 75

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +      L        + +        +++   +          +         +
Sbjct: 76  EVQAAIDAARGVLPTQLPYPPVYSKVNPADPPIMT-LALTSDSLPITRLNDVADTLLAQK 134

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       + L        +    DP+RL     +   +       N       F     
Sbjct: 135 LSQIGGVGRVLIEGGQRPAVRVRMDPARLAAYGLSLEDVRSALSKANVDMPKGSFDGVAQ 194

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S G    + D +                                         ++ + 
Sbjct: 195 ALSIGANDQISDPL--------------------AYPAQVVAWKNNAPVRISDLGDVVEG 234

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +                     +   +   T++        L+ G        V      
Sbjct: 235 VENSRVAGWFDGKPAVILNIQRQPGANIVATVDRLQAKLPELKRGVPTGIKLSVLADRTE 294

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S +  + T  +   LV+ V++  +   +  L+   ++ L++I T  +++L G +L 
Sbjct: 295 TIRASVADVEFTLVLTVILVIGVIWAFLRSVRATLIPAVALPLSLIGTFGVMALAGFSLD 354

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I++ E I     K    F +   G      TI    ++ +  
Sbjct: 355 NLSLMALTISAGFVVDDAIVMIENIVRYIEKGMKPFEAALAGAQEIGFTIVSLTVSLVAV 414

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F     G   R FA+T+ +++++S   ++++   M   +++    ++        
Sbjct: 415 FIPLLFMTGIVGRLFREFALTLAVAVVVSAVVSLTLTPMMCAHLLKGGHEEAKSGRFFDA 474

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                       +  R          ++     L+       +  +    +    +   D
Sbjct: 475 LRDAYARSLDWVLG-RQVATLWVAFATLVLTIGLYVFMPKGFLPTQDTGVIVATTDARAD 533

Query: 591 LS 592
           +S
Sbjct: 534 VS 535



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 10/239 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  I         V+A +      +    + ++  + S      +    V L  Q     
Sbjct: 201 NDQISDPLAYPAQVVAWKNNAPVRISDLGDVVEGVENSRVAGWFDGKPAVILNIQRQPGA 260

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIW- 685
                ++ ++ K+ E+           V    +  +          ++++ I ++  IW 
Sbjct: 261 NIVATVDRLQAKLPELKRGVPTGIKLSVLADRTETIRASVADVEFTLVLTVILVIGVIWA 320

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     L L +  T G  AL G   +  ++ A+    G+ V+D +V+ + + 
Sbjct: 321 FLRSVRATLIPAVALPLSLIGTFGVMALAGFSLDNLSLMALTISAGFVVDDAIVMIENI- 379

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
             ++     +   +       E     V  +++     +P+    G V      FA+ +
Sbjct: 380 --VRYIEKGMKPFEAALAGAQEIGFTIVSLTVSLVAVFIPLLFMTGIVGRLFREFALTL 436



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 83/238 (34%), Gaps = 6/238 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S + S+    +        +   V + +     V+       +     E+    TI    
Sbjct: 747 SAVSSVSRARVPLVITHQGQFPAVTISFNLAPGVSLGAATAAIDGLQQEMGLPETITGDY 806

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALF 714
                  R  +      +  + + + I + + ++     +  ++TL       L   A  
Sbjct: 807 SGDAAEFRRSLESQPWLIAAAMVVIYIVLGVLYESTIHPVTIMSTLPSAGIGALLALAAS 866

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G + +L  +  ++ L+G    + +++ D   +         S R+ I  +        + 
Sbjct: 867 GHDLSLVGLIGIVLLMGIVKKNAIMMIDFAIE--AERHHGKSPREAIVSASLLRFRPIMM 924

Query: 775 TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           T+MAA +  LP+A+    G  +     I +  G+V++   +++    I L     + +
Sbjct: 925 TTMAALLGALPLAIDSGTGAELRRPLGISIVGGLVLSQMITLYTTPVIYLAFERLKRR 982


>gi|153003115|ref|YP_001377440.1| acriflavin resistance protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026688|gb|ABS24456.1| acriflavin resistance protein [Anaeromyxobacter sp. Fw109-5]
          Length = 1067

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/525 (12%), Positives = 148/525 (28%), Gaps = 41/525 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +   +   GL+  +         D FP   P               +V    
Sbjct: 9   KKPIVTVTVMLALVIFGLIALV-----ALKTDEFPDVQPPVV---------AVTIVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             + V   L    ++    +          S      +  + F   +  +     +   +
Sbjct: 55  SPETVERELIDPIEDAIFSISGIDGEQTTASATDGLAQFIVFFDFEKDLQEATQDIRDAI 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               + L ++ ++ ++      +  IV     +          +         ++   + 
Sbjct: 115 SEKRADLPLEMEEPIITRFDPADEPIV--SLTLTSGSIDVPSLTRLADEVVSRELRAVQG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       +L  E +P  +     + + +       N +                N
Sbjct: 173 VADVRLVGGRKRELTVELNPQAMAAAGVSASDVVGALQAQNLAAPVGRV----------N 222

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             L E  + +SG                    I+    G +        ++         
Sbjct: 223 TPLGEQSIRLSGRLQT----------PDEFAAIAVATRGGQVVRLGQLGSVKDGAEEPRT 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +                 S     +     A  L           V +        S 
Sbjct: 273 LALYDTSEAVGLEVLKTKGYSTTAVADEIKARAKALEPRLPKAAKLQVVQDAGERVRRSV 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  + T    A L ++V+F  +   +  ++   ++ ++V+     + + G TL   S+ G
Sbjct: 333 NEVQTTLVEGALLTVLVVFFFLNSWRSTVITGLALPVSVLAAFISVWMFGFTLNTMSLLG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVV 476
           + L IG+ +D  I+V E I       +    +   G      A +    S ++  +    
Sbjct: 393 LSLAIGILIDDAIVVRENIVRHIELGEDHTTASFKGTDEIGLAVAATTFSIVSVFVPVAF 452

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           ++   G   + FA+T+  ++L+S+F + S+   M  +    +  K
Sbjct: 453 MYGVAGQWFKPFALTIAAAVLVSLFVSFSLDPMMSAYWPDPQIEK 497



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 8/155 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V  + + +L+  +    W   +     L + +        +FG   N  ++  +   IG 
Sbjct: 340 VEGALLTVLVVFFFLNSWRSTVITGLALPVSVLAAFISVWMFGFTLNTMSLLGLSLAIGI 399

Query: 733 SVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
            ++D +VV    R+N+ +             K  +E       T+ +     +P+A    
Sbjct: 400 LIDDAIVV----RENIVRHIELGEDHTTASFKGTDEIGLAVAATTFSIVSVFVPVAFMYG 455

Query: 790 -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G     FA+ +A  ++V+   S  +   +  + 
Sbjct: 456 VAGQWFKPFALTIAAAVLVSLFVSFSLDPMMSAYW 490



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/126 (17%), Positives = 52/126 (41%), Gaps = 5/126 (3%)

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +G   L G   N+ ++  V+ L G    + +++ D  +         IS RD + ++  
Sbjct: 906  VVGALLLTGDTLNIMSLIGVILLFGIVAKNAILLIDFAK--WAREERGISIRDALVEAGR 963

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + TS+A    ++P+A+    GG         +  G++ +   ++ +   +   +
Sbjct: 964  IRLRPIMMTSVAIIAGMIPVALGAGEGGDFRAPLGRAVIGGVITSTLLTLLVIPTVYEIM 1023

Query: 824  YDWRAK 829
              +R +
Sbjct: 1024 DSFRER 1029


>gi|88811509|ref|ZP_01126764.1| Acriflavin resistance protein [Nitrococcus mobilis Nb-231]
 gi|88791398|gb|EAR22510.1| Acriflavin resistance protein [Nitrococcus mobilis Nb-231]
          Length = 1032

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/511 (12%), Positives = 148/511 (28%), Gaps = 39/511 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +GL       L    + ++P                          
Sbjct: 10  RPVLASVVSLLILIVGL-----RALGLLEVRQYPETENTVVT---------VSTTYSGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V GF+     +  +  +     + +    Q+ I      +        ++   +   
Sbjct: 56  SELVKGFVTQPLQQAIAEAQGIDYLLSNSALGQSTIEAHMQLNYDANAAVAEIQAKVASQ 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    +  ++ +TT    +++      D       + +  ++R    Q+       +
Sbjct: 116 RNVLPEAAEDPVIDSTTGDTTALMYLAFYSD--TMSLPQITDYLLRVAQPQLQALPGVAK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +P R+  L  T   ++      N          +++  +      
Sbjct: 174 ARLIGNKTFAMRIWLNPQRMAALDITAEDVADVLRENNYLAGVGQTKGKYVAINLTATTD 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V                       +   ++   +            +             
Sbjct: 234 VSAP--------------------RSFENLVVRQGKGTLVRLRDVTSTELGAEDYDSATW 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +     E    +   +RA        ++          S +  
Sbjct: 274 YQGRPSVFIGVEQAPGANPLGVAERVQDILPRIRAQMPEGLNVVLPYDASTFIKDSINEV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T A    +VL+V+++ +   +  L+   ++ L++I    L+ L+G +L L ++  +VL
Sbjct: 334 YRTIAEAVLIVLLVIYLTLGSIRAALIPAVAVPLSLIGGAFLMLLMGFSLNLLTLLSMVL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E +     + +  F +   G       I     T +     + F G 
Sbjct: 394 AIGLVVDDAIIVVENVHRHIEQGKPRFQAAIEGARELGLPILAMTTTLVAVYAPIGFMGG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAM 510
             G     FA ++  ++LIS   A+++   +
Sbjct: 454 LVGTLFTEFAFSLAGAVLISGVVALTLSPML 484



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 74/209 (35%), Gaps = 8/209 (3%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
               G +     + + +    ++      +  +        +   +   + V      ++I
Sbjct: 799  TVEGVTAPGVALGDALSYLQSQAETQFPMGFSYDYTGSSRQYAQQGSALVVTFFLSLLII 858

Query: 683  YIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            Y+ +      W      + ++ + I   L F  L     N+     ++TLIG    + ++
Sbjct: 859  YLVLAAQFESWRDPAIILVSVPMSIAGALIFITLGFASVNIYTQVGLITLIGLVSKNGIL 918

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
            + +    N    T  +S R  ++++    L   + T+++  +++LP+      G     +
Sbjct: 919  IVE--FANQLQQTQGLSKRAAVEEAAAIRLRPIIMTTVSMVVAMLPLLTASGPGAVSRFN 976

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              + +A G+ +    ++F+          
Sbjct: 977  IGLTVATGLGIGTLFTLFVLPAFYALFAR 1005



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 75/240 (31%), Gaps = 11/240 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V         +   + +S          F G +                  +L  ++ ++
Sbjct: 253 VRLRDVTSTELGAEDYDSATWYQGRPSVFIGVEQAPGANPLGVA--ERVQDILPRIRAQM 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            E + +    +          E+ R     V+I  + + + +        AL     + L
Sbjct: 311 PEGLNVVLPYDASTFIKDSINEVYRTIAEAVLIVLLVIYLTLG---SIRAALIPAVAVPL 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +        L G   NL  + +++  IG  V+D ++V + +    +             
Sbjct: 368 SLIGGAFLMLLMGFSLNLLTLLSMVLAIGLVVDDAIIVVENVH---RHIEQGKPRFQAAI 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +   E     +  +        P+   G   G++   FA  +A  ++++   ++ ++  +
Sbjct: 425 EGARELGLPILAMTTTLVAVYAPIGFMGGLVGTLFTEFAFSLAGAVLISGVVALTLSPML 484


>gi|118580619|ref|YP_901869.1| acriflavin resistance protein [Pelobacter propionicus DSM 2379]
 gi|118503329|gb|ABK99811.1| acriflavin resistance protein [Pelobacter propionicus DSM 2379]
          Length = 1036

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/495 (12%), Positives = 137/495 (27%), Gaps = 41/495 (8%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRS---FLK 82
                +   P                   + +           +    +  L      + 
Sbjct: 29  FRLLPISPLPQVDFPT-------------ISISASLPGADPETMSTSVAAPLERQFGRIA 75

Query: 83  KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                  +  +    ITL F   R  +  A  V   +      L  +  KN         
Sbjct: 76  GVTEMTSTSNRGSTSITLQFDLDRDIDGAARDVQAAINAARGFLPTNLPKNPTYRKVNPS 135

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
            + ++    +                    +I       Q       L  +  E +P  L
Sbjct: 136 DAPIMI-LALTSTTISKPRMYDLASTVLQQKISQVRGVGQVTVGGSSLPAVRVELNPLAL 194

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            +   +   +       N ++                           G        N  
Sbjct: 195 SRYGVSLESVRTTLSANNVNRPTGQLSD--------------------GERSWQIQTNNQ 234

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +  + +                 +   +  +    +         I + +   +  
Sbjct: 235 LHRAEEYLPLIISHNAGSSLRLADVARVEDSVEDLRSTGLANGQPAVLLIINRQPGANII 294

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T++    L   L A         V      +  GS +  + +  I   LV++V+F  + 
Sbjct: 295 ETVDRVRDLLPQLEAALPGGIRMSVTMDRTPSIRGSLAEVEQSLVISGLLVILVVFAFLR 354

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             +  L+   ++ ++++ T A++ L   +L   S+  + +  G  VD  I+V E I    
Sbjct: 355 TLRATLIPAVAVLVSIVATFAVMYLCDYSLDNLSLMALTIATGFVVDDAIVVLENITRYR 414

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILIS 499
              +S   +   G      T+   +I+ +   + +   GG      R FA+T+  +IL+S
Sbjct: 415 EMGRSPLEAALAGSKEIAFTVLSMSISLVAVFIPILLMGGMVGRLFRQFAVTLSTAILVS 474

Query: 500 MFTAISIVRAMMIFI 514
           +  ++++   M   +
Sbjct: 475 LAVSLTLTPMMCARL 489



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 71/203 (34%), Gaps = 6/203 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++  Q          RV +++ +    +     +  T    P I   L       VI   
Sbjct: 284 IINRQPGANIIETVDRVRDLLPQLEAALPGGIRMSVTMDRTPSIRGSLAEVEQSLVISGL 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     +++ I  T     L     +  ++ A+    G+ V+D 
Sbjct: 344 LVILVVFAFLRTLRATLIPAVAVLVSIVATFAVMYLCDYSLDNLSLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +      S  +       E     +  S++     +P+ + GG V    
Sbjct: 404 IVVLENI---TRYREMGRSPLEAALAGSKEIAFTVLSMSISLVAVFIPILLMGGMVGRLF 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAA 817
             FA+ ++  I+V+ + S+ +  
Sbjct: 461 RQFAVTLSTAILVSLAVSLTLTP 483



 Score = 42.0 bits (96), Expect = 0.49,   Method: Composition-based stats.
 Identities = 35/311 (11%), Positives = 92/311 (29%), Gaps = 17/311 (5%)

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               + +         R   V  ++L     +  +      +    +          +   
Sbjct: 721  TPKVINNTLYDAFGQRQVAVSYTLLNQYHVVMEVAPRFWQHPDTLRDIRVTSSDGAQVPL 780

Query: 591  LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             +  R       +       F         L         +              +  S 
Sbjct: 781  SAFTRFQTRPTTLAVNHQGQFPSVTLSFNLLPGYSLGDAVEAIDKAKRDMGFPAAIRGSF 840

Query: 651  IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTL 708
                +     ++ +      + ++ + + + I + + ++ Y     I + +    +   L
Sbjct: 841  QGTAQAFRSSMASQ-----PLLILAALVTVYIVLGMLYESYIHPITILSTLPSAGVGAVL 895

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                L   + +L A+  V+ LIG    + +++ D             S  + I  +    
Sbjct: 896  ALL-LCKTDMSLIAMIGVILLIGIVKKNGIMMVD--FALQAERGEGKSPEEAIFAACLLR 952

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + T+MAA +  LP+A+    G  +     I +  G++ +   +++    + L++  
Sbjct: 953  FRPIMMTTMAALLGALPLALGHGVGSELRRPLGIAIVGGLIFSQMMTLYTTPVVYLYMDR 1012

Query: 826  WR----AKNAR 832
            +R     K  R
Sbjct: 1013 FRIWLDRKRKR 1023


>gi|164685750|ref|ZP_01947485.2| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212218288|ref|YP_002305075.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuK_Q154]
 gi|164601260|gb|EAX31892.2| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212012550|gb|ACJ19930.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuK_Q154]
          Length = 1012

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/615 (13%), Positives = 172/615 (27%), Gaps = 42/615 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L  ++  +G++        +  L  FP                      +  
Sbjct: 9   RQPVLAIVLSLILVVLGVVA-----FQRLELRFFPKLELPILT---------VATTYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S +        +     + +T+ F      E  A  V   +  
Sbjct: 55  SAQLMESQVTTQIENALSGVDHIASISSTSYPGSSYVTVLFQLGGNFEEEASAVRDKVFA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  +     +   T+    +             + +    + R     +       
Sbjct: 115 IRDQLPPNANSPTITVGTKGNPVL---GIGFIDPQKSSADIRDYVERAVQPALRQLSGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    + S++     T   +       N               S  +  
Sbjct: 172 EVDILGASDYAMRIWLNASKMVAHQVTVTDVKNALTANNIYFPAGSIQEPKRNYSIVSHT 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D                          I  +  G                ++     
Sbjct: 232 QLKDATA-------------------FGNIIIKNNDGGTVRLNDIGHAELGYRSLYEAPM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      + +     + +            A ++    P     V          S   
Sbjct: 273 RINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASVNYDASTFLKSSIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV+ V+F+ +   +   +   +I +++I   A + L G T+   S+ GIV
Sbjct: 333 TFYAMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKLFGFTINTMSLLGIV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I     +  + F +   G       I    +T +     + F  
Sbjct: 393 LAIGLVVDDAIVMLENIHRHIEEGMTPFQAAIKGSREISFAIIAMELTLVAVYAPVGFVQ 452

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + FA T+  +++IS F A+++   M   I+  +   S     + R F      
Sbjct: 453 GFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKDSRLTIIIDRAFSQLTGF 512

Query: 539 AIQFMRA---RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +F++    +       +L       +LF    +  I  +    + V    P   S+  
Sbjct: 513 YQRFLKFALNKRRLFIAGLLAIAGVGYVLFISLPSELIPKEDIGLIQVSVTSPSGASLNY 572

Query: 596 SNLESLQIGDISFQN 610
           +N  + Q+  I  QN
Sbjct: 573 TNQYAEQVEKIIQQN 587



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 81/243 (33%), Gaps = 7/243 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + L    + +   +        L+    Q  + V     ++     I + +P     + 
Sbjct: 259 HAELGYRSLYEAPMRINGQNGIELLIEPLQEANPVTVAHEVKQALATIQKNLPPGMQASV 318

Query: 655 EIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
                   +  I +    +     + + +          A   I T+ + +     F  L
Sbjct: 319 NYDASTFLKSSIEETFYAMGEAVLLVIFVVFLFLGSARAASIPIITIPVSLIAVFAFIKL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           FG   N  ++  ++  IG  V+D +V+ + +    +     ++      K   E     +
Sbjct: 379 FGFTINTMSLLGIVLAIGLVVDDAIVMLENIH---RHIEEGMTPFQAAIKGSREISFAII 435

Query: 774 YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +       P+     +   +   FA  +A  +V++A  ++ ++  +   I   R K+
Sbjct: 436 AMELTLVAVYAPVGFVQGFTAELFKEFAFTLAAAVVISAFIALTLSPMMCSRILLPRTKD 495

Query: 831 ARI 833
           +R+
Sbjct: 496 SRL 498



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 88/274 (32%), Gaps = 11/274 (4%)

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
            +         DF    +L V +N   D +   S   S  I            +F      
Sbjct: 743  IVQMDKKDLTDFNALKKLYVHSNNKTDANKGNSIPVSSLIDLTPTVGQGSFTHFNRFRSG 802

Query: 624  QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLI 682
                 +A       V   I   VP     +        + + ++     + I  +  + I
Sbjct: 803  TISARLAPGYSESQVIDYIKAHVPFVMTSDVHYAFSGKAAQFLQSSKSMIGIILMSLIFI 862

Query: 683  YIWIRFKWYFALGA-ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVV 739
            Y+ +  ++   L   +  L + +    G  +L   G   ++ +   ++TLIG      ++
Sbjct: 863  YLVLSAQFGSFLDPFVILLAVPLCIVGGLLSLKLTGGTLSIYSQIGLVTLIGMISKHGIL 922

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GS 796
            +   +     L    ++ ++ I +     L   + T++A     LP+A+  G   I    
Sbjct: 923  ITQFIND---LRKQGMAMQEAILRGAMIRLRPVLMTTLAMVFGALPLALASGPGSIGRHQ 979

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                +  G++     S+ I  PI         K 
Sbjct: 980  IGWVIVGGLLFGTFFSL-IVVPIAYSYLGRFKKR 1012


>gi|330988082|gb|EGH86185.1| RND efflux transporter [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 926

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 67/500 (13%), Positives = 141/500 (28%), Gaps = 37/500 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPIAPLPEAEFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       +TL F  ++  +  A +V   +     +L  D              S
Sbjct: 82  TQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADMPSLPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL   ++   +    E S         Q+   E   Q   + +    +  +  P +L  
Sbjct: 142 PVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L  T A +                              +          ++  ++N    
Sbjct: 201 LGLTLADIRLAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                         +   +   T
Sbjct: 241 KPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V          S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRIQRELPRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQL 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            Q +  +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMK 521
            ++++   +    +R     
Sbjct: 481 VSLTLAPTLAALFMRAPTHN 500



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495


>gi|197265022|ref|ZP_03165096.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243277|gb|EDY25897.1| multidrug resistance protein MdtC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 1026

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 171/607 (28%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAEMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-- 537
             G  +R FA+T+ ++I IS+  ++++   M  ++++  K ++          L+     
Sbjct: 455 LPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKLGVGRLLVALQQG 514

Query: 538 ----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV      ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + ++  E + + +T++   ST++ +     ++ ++ +   ++ ++ +   
Sbjct: 803  TIAFNLPTGTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILIVAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++    I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRSG--GLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 1017



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/164 (14%), Positives = 63/164 (38%), Gaps = 8/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEAEMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G ++  FA+ ++  I ++   S+    P++       +K  
Sbjct: 454 GLPGRLLREFAVTLSVAIGISLVVSL-TLTPMMCGWMLKSSKPR 496


>gi|83595028|ref|YP_428780.1| acriflavin resistance protein [Rhodospirillum rubrum ATCC 11170]
 gi|83577942|gb|ABC24493.1| Acriflavin resistance protein [Rhodospirillum rubrum ATCC 11170]
          Length = 1029

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 69/525 (13%), Positives = 150/525 (28%), Gaps = 40/525 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G    +     +  + ++P                         
Sbjct: 9   RRPVLATVISLLILVVGFQALM-----RLPIRQYPEMSNTVIT---------VTTTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     +  S  K       S  Q  + +      +   +    +VT  +  
Sbjct: 55  NSDLIQGFVTQPIQKAVSTSKGLDYLTSSSSQGVSTVKAFVRLNEDPDAAMTEVTAKVNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  +    ++   T +         +         + +  + R    ++       
Sbjct: 115 VRSLLPRNVDNPVISKETGETFPAAFIAFSSKSHSQE--QITDYVNRVIQPKLAAVSGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP ++ Q   T + +       N S                   
Sbjct: 173 NPEVFGAKNFSIRVWLDPEKMAQQGLTASDVQTALTANNFSSAAGSIKGSL--------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       +    A  D         +     GAR         +           
Sbjct: 224 -----------DIINTKAETDLTDIAEFRKLVVRNDGARLIRLQDIGEVSLAAESSDMSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +             + +    I          +          ++   +      S  
Sbjct: 273 FASGQAAIFVGVFTTPEANPLSVIAEIRETALPAIIDQLPEGMTALMAYDSTVFITESIR 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A +V++V+F+ +   +  ++   ++ L+++    LL +LG ++ L ++  +
Sbjct: 333 EVVKTIVEAAIIVMVVIFLFMGSVRSVVIPLVTVPLSLVGVAILLMVLGFSINLLTLLAM 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     +  + F +   G       +    IT       + F 
Sbjct: 393 VLAIGLVVDDAIVVVENVHRHIEEGSTPFQAAIDGTREIALPVISMTITLAAVYAPIAFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G   G   R FA+ +  S+++S   A+++   M   I+R++  K 
Sbjct: 453 GGLTGALFREFALALAGSVVVSGVVALTLSPMMCSKILRHEVTKK 497



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 65/176 (36%), Gaps = 9/176 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +   L  +  ++ E +      ++ +   +  RE+++  +   II  + + +++    
Sbjct: 298 EIRETALPAIIDQLPEGMTALMAYDSTVFITESIREVVKTIVEAAIIVMVVIFLFMG--- 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +  + T+ L +        + G   NL  + A++  IG  V+D +VV + +    
Sbjct: 355 SVRSVVIPLVTVPLSLVGVAILLMVLGFSINLLTLLAMVLAIGLVVDDAIVVVENVH--- 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
           +      +          E     +  ++       P+A  G   G++   FA+ +
Sbjct: 412 RHIEEGSTPFQAAIDGTREIALPVISMTITLAAVYAPIAFMGGLTGALFREFALAL 467



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 67/160 (41%), Gaps = 6/160 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + I + + +  +F+ +   L  + ++ L I   L   AL     N+     ++TLIG 
Sbjct: 853  VFALIIIFLVLAAQFESFRDPLVIMISVPLSICGALLPLALGATTMNIYTQVGLVTLIGL 912

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++ +  R+  +     ++    I+ +    L   + T+ A    ++P+    G 
Sbjct: 913  ITKHGILMCEVARE--RQEEQGLTRAQAIEVAAKLRLRPILMTTAAMVAGLIPLMFASGA 970

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAK 829
                 F+I +    G+ +    ++F+   I  F+ + R+K
Sbjct: 971  GANSRFSIAVVIVAGMSIGTLFTLFVLPVIYTFLAEDRSK 1010


>gi|323525648|ref|YP_004227801.1| acriflavin resistance protein [Burkholderia sp. CCGE1001]
 gi|323382650|gb|ADX54741.1| acriflavin resistance protein [Burkholderia sp. CCGE1001]
          Length = 1040

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 81/621 (13%), Positives = 176/621 (28%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I  +GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLVGLVALRFLPLSALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PDVMTSSVTAPLERQFGQMPSLSQMSSQSSAGSSIITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +++   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPIIT-LAITSKTLPLTQVQDLADTRLAQKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGQRPAVRIQANPRALAAYGLNLDDLRTTISNLNVNTPKGNF------DGPTRNYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                           G R         I +       G  
Sbjct: 229 INANDQLT--------------DANAYKSAVVAYKGGRPVMLTDVATIVQGAENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   L+          V          S    
Sbjct: 275 VDGTPAIILNVQRQPGANVIQVVDNIKKLLPQLQQALPAALDVQVVTDRTTTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELAMSVVLVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGESPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   I 
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPHESHRFEARAHRAIDWVIA 514

Query: 539 ------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +  ++ ++  +F     + +   G IQ    A + V  +
Sbjct: 515 RYAVALTWVLDRQRATLVVALLTLALTALLYVFIPKGFFPVQDTGVIQAITQAPQSVSYA 574

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    + L    +   + + 
Sbjct: 575 SMAERQQELAAQILKNPDVES 595



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    L G   +  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGESPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAVVSLTLVP 483


>gi|238024171|ref|YP_002908403.1| Multidrug resistance protein MdtC [Burkholderia glumae BGR1]
 gi|237878836|gb|ACR31168.1| Multidrug resistance protein MdtC [Burkholderia glumae BGR1]
          Length = 1100

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 65/622 (10%), Positives = 158/622 (25%), Gaps = 46/622 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL       +       FP+                    L    
Sbjct: 10  RPVATTLLALGIALAGLFAFAKLPVSPLPQVDFPTIS--------------VFASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        +       I+L F   R     A  V   +   
Sbjct: 56  PETMATSVTSPLERHLGSIAGVSQMTSTSSLGNALISLQFVLDRDLNGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    K N          S ++   ++    +                +   +   +
Sbjct: 116 RADLPASLKSNPTYQKVNLADSPIMV-LSVTSDTAAPSRVYDAASTVLQQSLSQIQGIGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  E +P  L         +       N +                    
Sbjct: 175 VDVFGSANPAVRVELEPPALFHYGIGLEDVRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N    +     D+                ++   +  V +   
Sbjct: 217 --KGAIEFGPQRFQLYTNDQASSAAQYRDLVVAYRNGAAVRLADLGSVIDSVEDVRNLGR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I       +    ++        L+A                    S    
Sbjct: 275 ANGKRAVLVILYRAPGANVIDVVDRVQAALPRLKAAMPADVDVAPVLDRSRTIRASLRDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+F+ +   +  L+   ++ +++I T   + LLG ++   S+  +++
Sbjct: 335 EHTLLIAVGLVVMVVFLFLRNWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +    +   G      T+   +++ +   + +     
Sbjct: 395 ATGFVVDDAIVVLENIARHIEHGKPRMQAALDGAREVGFTVLSISLSLIAVFLPILLMTG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDINPLSRF 531
             G   R FA+T+ L+I +S+  ++++   M   +           +  + ++       
Sbjct: 455 LIGRLFREFALTLSLAIGVSLVVSLTLTPMMCARLLPEAGTRREEGRLARWLERGFARLQ 514

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +       R   + ++    +  +         +       +  G+  ++    
Sbjct: 515 RGYDVSLLWALRHPRLILLSLAATIVLNLVLYAKVPKGFFPQQDTSVLIGGIQVDQSTSF 574

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
             +++    +     S  N   
Sbjct: 575 QAMQAKFADMMHIIQSDPNVVS 596



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +  + M++++++R  W   L     + + I  T G   L G   +  ++ A++   G+
Sbjct: 340 IAVGLVVMVVFLFLR-NWRATLIPSVAVPISIIGTFGAMYLLGFSIDNLSLMALIVATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +                 E     +  S++     LP+ +  G 
Sbjct: 399 VVDDAIVVLENI---ARHIEHGKPRMQAALDGAREVGFTVLSISLSLIAVFLPILLMTGL 455

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAA 817
           +      FA+ ++  I V+   S+ +  
Sbjct: 456 IGRLFREFALTLSLAIGVSLVVSLTLTP 483



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 88/240 (36%), Gaps = 21/240 (8%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S   G              V + +     VA +    ++ + + EI    +I    
Sbjct: 850  SAIASFGPGTTPIAISHQGPFVAVTISFNLPPGVALSDARRVIYETMAEIGMPGSISGAF 909

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   + +R  ++ +I + +A+ I + + ++ +   +  ++TL       L    LF
Sbjct: 910  AGTAEEFEKALRDQLLLIIAALVALYIVLGVLYESYVHPVTILSTLPSAGVGALLALLLF 969

Query: 715  GIEFNLTAVAAVLTLIG-------YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
              EF++  +  +  LIG         V+  +V               ++  D I ++   
Sbjct: 970  HTEFDIIGLIGIFLLIGIVKKNAIMMVDYAIV----------AARRGLASFDAIHEACRL 1019

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 + T++AA   VLP+      G  +     I +  G++ +   +++    + L++ 
Sbjct: 1020 RFRPILMTTLAALFGVLPLVFGNGDGAELRAPLGITLVGGLIASQILTLYTTPVVYLYMD 1079


>gi|330969195|gb|EGH69261.1| acriflavin resistance protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 1034

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/500 (13%), Positives = 141/500 (28%), Gaps = 37/500 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPIAPLPEAEFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       +TL F  ++  +  A +V   +     +L  D              S
Sbjct: 82  TQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADLPSLPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL  +    +I    E S         Q+   E   Q   + +    +  +  P +L  
Sbjct: 142 PVLILSVSSSLIPG-TELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L  T A +                              +          ++  ++N    
Sbjct: 201 LGLTLADIRLAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                         +   +   T
Sbjct: 241 KPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          V          S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRIQGELPRLQEMLPASVDVSVLNDRTRTIRASLHEVEMTLMIAVLLVVAVMALFLRQL 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            Q +  +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMK 521
            ++++   +    +R     
Sbjct: 481 VSLTLAPTLAALFMRAPTHH 500



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 89/250 (35%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ ++ ++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQGEL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPASVDVSVLNDRTRTIRASLHEVEMTLMIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 79/202 (39%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   ++I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVRMLDQAKNEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  V+ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGVVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               ++ ++ I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLTPQEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGSELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     + 
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHRR 1021


>gi|297180155|gb|ADI16377.1| cation/multidrug efflux pump [uncultured bacterium HF130_12L15]
          Length = 1056

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/516 (12%), Positives = 139/516 (26%), Gaps = 42/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    + +       G L            +  P                   L  +  
Sbjct: 9   RNARLTLSIMVFFLIAGALA-----YQALPKEAEPDVAIPVLY---------VSLAYQGI 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +     L    +     LK       +  Q    + L F  S       ++    +  
Sbjct: 55  SPEDSERLLLRPVETKLKSLKGVKEMRSAAYQGGGYVLLEFDPSTDLSTALEETRNKVSD 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D ++  +      E  +++   + D              R+  D+I      +
Sbjct: 115 ARADLPRDAEEPTVNEVNVSEFPVLVVTLSGDVPERVLT----TAARELRDRIEEIPGVL 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L        +M       N+            + +     
Sbjct: 171 EGTLQGARDDLVEVIIDPMKLSSYGFQLDQMIAAVNASNSLVAAGTIEGEEGKYAVKVPS 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+E   ++                     ++                 I           
Sbjct: 231 LIETVEDV--------------------AELPIVAGPNAVVQAKDIATIRSTYKDAETIT 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +   T+E    L+   +            +          + 
Sbjct: 271 RLNGRPAIAIEVKKRIGENLVHTVEQVKALSDEFQKSLPEGMHVTYTQDKSVFINQLLND 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   LV I++  ++      L+   +I  + +  + LL+L+G T+ +  +  ++
Sbjct: 331 LQNHVLIAVILVFIIILYVLSGR-ASLLIGLAIPTSFLTGILLLALMGFTINMVVLFSLI 389

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+V E       +      + D+   R    +  + +T + A   L F+ 
Sbjct: 390 LAVGMLVDDAIIVTEFAERRMSEGMPKAEAFDLAARRMAGPVIAATLTRIAAFSPLLFWP 449

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G  ++   IT+ +++  SM  A+     +    
Sbjct: 450 GVVGDFMKYMPITLIVTLAASMLYALIFTPTLGAIF 485



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 64/190 (33%), Gaps = 6/190 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             ++ +  +  + +P                +L+      V+I+ I + I I        
Sbjct: 295 EQVKALSDEFQKSLPEGMHVTYTQDKSVFINQLLNDLQNHVLIAVILVFIIILYVLSGRA 354

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           +L     +       +   AL G   N+  + +++  +G  V+D ++V +   +  +  +
Sbjct: 355 SLLIGLAIPTSFLTGILLLALMGFTINMVVLFSLILAVGMLVDDAIIVTE-FAE--RRMS 411

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             +   +  D +     G  +  ++    +  P+  W    G  +    I +   +  + 
Sbjct: 412 EGMPKAEAFDLAARRMAGPVIAATLTRIAAFSPLLFWPGVVGDFMKYMPITLIVTLAASM 471

Query: 810 SSSIFIAAPI 819
             ++     +
Sbjct: 472 LYALIFTPTL 481



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 67/183 (36%), Gaps = 30/183 (16%)

Query: 672  GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV----AAVL 727
                +   + I +  +F  + ++  +   +  I  T+G F    I      +      V+
Sbjct: 846  AFGAALFLIFIVLLAQFNKFTSVFLVLMTV--IMSTIGVFLGLLITGQPFGIVMSGIGVI 903

Query: 728  TLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             L G  VN+ +V+   YDR+R             + + ++  E     V T+++A + VL
Sbjct: 904  ALAGVVVNNNIVLIDTYDRLRSE------GWEKLEAVLQTCRERARPVVLTALSAILGVL 957

Query: 785  PMAV-WGGSVIG--------------SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            P+A   G  +                S +  + FG+  +   ++ +    L+     + +
Sbjct: 958  PIAFGLGLELFHHETTINAPSTQWWISLSSAIVFGLAFSTVLTLVVTPSALMVFTRDKHR 1017

Query: 830  NAR 832
              +
Sbjct: 1018 TTK 1020


>gi|152981188|ref|YP_001351742.1| cation/multidrug efflux pump [Janthinobacterium sp. Marseille]
 gi|151281265|gb|ABR89675.1| Cation/multidrug efflux pump [Janthinobacterium sp. Marseille]
          Length = 1042

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/587 (12%), Positives = 164/587 (27%), Gaps = 39/587 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N    ++L+ +     L +        S +  FP       I          +  L   
Sbjct: 9   KNPIPAIMLFVL-----LGLGGLLAFKSSAVQDFPDIELPIVI---------VNASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + L+        +      +T+ F   +   +  + V   +  
Sbjct: 55  APAQLETEVARKIENSVATLQGIKNIYTKVLDGTVTVTVEFILEKNISDAVNDVRDAVAL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISI-VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           V + +  D +   +   +     I   +            E S  +      ++      
Sbjct: 115 VRADMPADLRDPSVTKVSTAGRVITTFTAAAAPGSQVDEQELSWFVDNTVSKRLLAVPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   +  ++  E D +++  L  T A +S           G    V     +    
Sbjct: 175 GSVKRVGGVTREVRVELDTAKMAALNVTAADVSRRLRQVQQEAPGGRGDVSGAEQAVRTI 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+   E+S                     +                 +   +A     
Sbjct: 235 ATVKTADELS--------------------KMDIPLTDGHHIRLDQVATVTDTIAERRTS 274

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +           S     + A    A L+       +      N         
Sbjct: 275 ASQDGKTVVGFEVFRTKGGSELAVAKGAKEAVAELQKNH-SNIVFKEAIDNAKPIKEDFD 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L ++V++  +   +  LVA  ++ L+VI T   L+  G TL + ++  +
Sbjct: 334 GSMSLLYEGALLAVLVVWWFLRDWRATLVASAALPLSVIPTFLGLAYFGYTLNMVTLLSL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+  E I       ++   +           +  +    +   +   F 
Sbjct: 394 ALVVGVLVDDAIVEIENIERHLSMGKTPMQAAMEAADEIGMAVIATTFALVAVFLPTAFM 453

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      + F  T  L++L S+  A  +   M  +I++ KK    +   L + ++    
Sbjct: 454 AGIPGLFFKQFGWTAVLAVLASLVVARLLTPMMAAYILKPKKQHVQEDGWLMQRYIKVMR 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             +           +  + SI  + LL T  +      +  I + + 
Sbjct: 514 WCLTNRLKTAIASAVFFIGSIMLVPLLPTGFVPPTDRAQTQINIELP 560



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 84/259 (32%), Gaps = 10/259 (3%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
             + + +     + L  V +  +++     S              + + G  +A  +  +
Sbjct: 244 SKMDIPLTDGHHIRLDQVATVTDTIAERRTSASQDGKTVVGFEVFRTKGGSELAVAKGAK 303

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               ++ +       +        I  +      +    + +A+L+  W    W   L A
Sbjct: 304 EAVAELQKNHSNIVFKEAIDNAKPIKEDFDGSMSLLYEGALLAVLVVWWFLRDWRATLVA 363

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L +  T    A FG   N+  + ++  ++G  V+D +V  + +    +  +   +
Sbjct: 364 SAALPLSVIPTFLGLAYFGYTLNMVTLLSLALVVGVLVDDAIVEIENI---ERHLSMGKT 420

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
                 ++ +E     + T+ A     LP A   G        F       ++     S+
Sbjct: 421 PMQAAMEAADEIGMAVIATTFALVAVFLPTAFMAGIPGLFFKQFGWTAVLAVLA----SL 476

Query: 814 FIAAPILLFIYDWRAKNAR 832
            +A  +   +  +  K  +
Sbjct: 477 VVARLLTPMMAAYILKPKK 495



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/196 (13%), Positives = 70/196 (35%), Gaps = 7/196 (3%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        S +   +    +   +       ++  E+   +    L     + + 
Sbjct: 796 NRSRNVTLDVELGSRSLGELNTEARALPSMRNLPPAVKIAELGDAQEMMLLFNSFGLAMA 855

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I  + +   + + FK +   +  +  L L I        + G   ++ ++  ++ L+G  
Sbjct: 856 IGVLCIYCVLVLLFKDFMQPITILAALPLSIGGAFVALLITGKALSMPSMIGLIMLMGIV 915

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGS 792
             + +++ D     +      ++  D +  + ++     + T++A    +LP+A+ WG  
Sbjct: 916 TKNSILLVD---YAILARQQGMNRFDALVDACHKRSRPIIMTTIAMGAGMLPLALGWGAD 972

Query: 793 VIGSFAIPMAFGIVVA 808
              SF  PMA  ++  
Sbjct: 973 P--SFRSPMAITVIGG 986


>gi|90422404|ref|YP_530774.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
 gi|90104418|gb|ABD86455.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
          Length = 1053

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/683 (12%), Positives = 188/683 (27%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+    ++   ++  +G +      + +      P                   +     
Sbjct: 12  RHPLPSIVFSIILLALGWVSFTKLAITRLPSADIPVIS--------------VSVSQFGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ FA     +   + +   +  
Sbjct: 58  APAELEAQVTKTIEDGVSGVEGVRHIASSITDGLSVTTIQFALETNTDRALNDIKDAVTR 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  +  + L+       + IV              + S  +       +    +  
Sbjct: 118 VRSQLPQNVNEPLIQRVDVIGLPIVTYAAISPGKTPE--QLSWFVDDVVKRALQGVRNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP RL+    T   +S      N    G    +     +     
Sbjct: 176 QVERIGGVEREILVSLDPDRLQAAGLTAVDVSHRLRGINVDLAGGRAEIGSNDQAIRTLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +++G  ++                                  +   +A      
Sbjct: 236 GARTLNDLAGTMISLPA--------------------GGEIRLDDLGTVTDTIADRRTFA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S              L+A    + L +++  +V    G+   
Sbjct: 276 RFNGEPVVALGIKRSKGASDVVVAAAVQKRVDALKAAYPDVDLKLIDT-SVDYTKGNYEA 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L +IV+F+ +   +  ++A  S+ L++      + LLG +L L S   I 
Sbjct: 335 AISTLFEGAILAVIVVFLFLRDFRATVIAAISLPLSIFPAFWAMDLLGFSLNLVSFLAIT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A   I  + I        + 
Sbjct: 395 LSTGILVDDAIVEIENIVRHIRMGKSPYRAALEAADEIGLAVIAISLTIIAIFAPASFMS 454

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ + +  S+  A  +   +  + ++           L R ++     
Sbjct: 455 GIAGQFFKQFGITVSVQVFFSLLAARFVTPVLAAYFLKDHPHVDKPPGLLLRTYIRLVTW 514

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV--DLSVVRS 596
           +++               SI SI LL    L      +  + L +     +         
Sbjct: 515 SVRHYFITVLIGVGVFAASIWSITLLPQGFLPAQDSARSLLALELPPGSQLAFTEQTTED 574

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +  L+        F         +      ++      +  +      + LS  +  E 
Sbjct: 575 IVARLRKRPEVRSVFVDGGRVPPGIFEVRRAALIINYTPKGDRSITQRELELSIGKELEA 634

Query: 657 VGPKISRELIRKGIVGVIISAIA 679
           V       L   G+  + +    
Sbjct: 635 VPDIRYWFLDENGLRAISLVVTG 657



 Score = 71.3 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 75/249 (30%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + A   + L  + +  +++       +        L   + +    V     ++   
Sbjct: 247 MISLPAGGEIRLDDLGTVTDTIADRRTFARFNGEPVVALGIKRSKGASDVVVAAAVQKRV 306

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P   ++  +                    + +A+++       +   + A  +
Sbjct: 307 DALKAAYPDVDLKLIDTSVDYTKGNYEAAISTLFEGAILAVIVVFLFLRDFRATVIAAIS 366

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I        L G   NL +  A+    G  V+D +V  + +   ++      S   
Sbjct: 367 LPLSIFPAFWAMDLLGFSLNLVSFLAITLSTGILVDDAIVEIENI---VRHIRMGKSPYR 423

Query: 760 LIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     +  S+           + G  G     F I ++  +  +  ++ F+ 
Sbjct: 424 AALEAADEIGLAVIAISLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARFVT 483

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 484 PVLAAYFLK 492



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 77/234 (32%), Gaps = 7/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  ++           ++     +      + A    ++ +           TI   +
Sbjct: 773  SVVADIRFDQGPTSINRYDRERQATVAADLVGTAALGDAMKQIYALPVMKSLPKTISVKQ 832

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +   EL       +    + +   + + F  +   +  + +L L I   +    + 
Sbjct: 833  SGDAESLNELSEGFATAISAGLMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIAALLIT 892

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G +        +L L+G    + +++ +   ++++          +ID  I       V 
Sbjct: 893  GKQLTTPVWIGILMLMGIVTKNAIMLVEFAVESIRDGQGRE--AAMIDAGIKRA-RPIVM 949

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T++A    + P A+    GG      A+ +  G++ +   S+     + + + D
Sbjct: 950  TTVAMVAGMTPSALAFGAGGEFRSPMALAVIGGLLFSTVLSLIFVPAMFMLMDD 1003



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 66/517 (12%), Positives = 161/517 (31%), Gaps = 29/517 (5%)

Query: 10   LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
              +++  +G+  A    +        P+      + L L+L  GS L       + +   
Sbjct: 520  FITVLIGVGVFAASIWSITLLPQGFLPAQDSARSL-LALELPPGSQLAFTEQTTEDIVAR 578

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
            L+   +    F+    +        +  + +++     +     ++ L +      +  D
Sbjct: 579  LRKRPEVRSVFVDGGRVPPGIFEVRRAALIINYTPKGDRSITQRELELSIGKELEAVP-D 637

Query: 130  PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
             +   L     + IS+V++  + + V + A E + ++ R  I    ISE+++        
Sbjct: 638  IRYWFLDENGLRAISLVVTGLDSNIVSNVAQELASQMKRIPIVANVISETSL-------- 689

Query: 190  LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
                       R    +   A ++    +        +                     +
Sbjct: 690  ----------DRPELRILPRADLAARLGVSTEGLSETIRVATIGDVGPALAKFDAGDRLV 739

Query: 250  SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                     A  D +  + +   +    G      V      +    +          + 
Sbjct: 740  PIRVQLEDGARADLQVLERLRVPTGGGRGGVPLSVVADIRFDQGPTSINRYDRERQATVA 799

Query: 310  QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
              +    A        +    + A+    SLP  +++ +  +  +       +    +  
Sbjct: 800  ADLVGTAALG------DAMKQIYALPVMKSLPKTISVKQSGDAESLNELSEGFATAISAG 853

Query: 370  AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
              +V  VL ++       +   FS+ L++   +A L + G  LT P   GI++ +G+   
Sbjct: 854  LMMVYAVLVLLFGTFLQPITILFSLPLSIGGAIAALLITGKQLTTPVWIGILMLMGIVTK 913

Query: 430  SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV---LFFFGGGAVR 486
            + I++ E   E  R  Q    ++     +    I  + +  +         F  GG    
Sbjct: 914  NAIMLVEFAVESIRDGQGREAAMIDAGIKRARPIVMTTVAMVAGMTPSALAFGAGGEFRS 973

Query: 487  GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              A+ +   +L S   ++  V AM + +    ++   
Sbjct: 974  PMALAVIGGLLFSTVLSLIFVPAMFMLMDDIGRLSWR 1010


>gi|296446858|ref|ZP_06888795.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
 gi|296255629|gb|EFH02719.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
          Length = 1034

 Score =  146 bits (368), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 61/515 (11%), Positives = 137/515 (26%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +  + I   GL+           +   P                          
Sbjct: 13  RPVATTLTMAAIFLAGLI-----GYRLLPVSALPQIDYPTI---------EVRTFHPGAS 58

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +              +     + ITL F+     +    +V   +   
Sbjct: 59  PEVVAATITAPLERQLGQTPGLTEIASTSSGGASIITLQFSLKLSLDAAEQQVQAAINAA 118

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     +        + VL+   +        +       +   +I        
Sbjct: 119 ASFLPTDLPAPPVYAKINPADAPVLT-LALRSTTMPLTQVQDLADSRVAQKISQLSGVGL 177

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    D ++L     +   +       N          R  + +      
Sbjct: 178 VSVSGGHRPAVVVRADTAKLAAHNLSLEDLRATISNANVDLPKGTIDGRSRQFAIDANDQ 237

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +  G                    +                 +         G  
Sbjct: 238 LQSARDYEG--------------------LVVAYRAGGPVRLQDVAEVADGSENRELGAF 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L A        +V      A   S    
Sbjct: 278 TDLEPAIIVDVKRQPGANVVAVVDQIKTLLPALAASLPATVDLVVLTDRTTAIRASIHDV 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        LV+ V+F+ +   +  ++   S+ L++I   A++ LLG +L   ++  + +
Sbjct: 338 EMELLFSIALVVAVIFLFLRSPRATIIPSVSVPLSLIGAFAVMYLLGYSLNNLTLMALTI 397

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +  +G      TI    I+ +   + L F   
Sbjct: 398 ATGFVVDDAIVMIENISRYIERGETPLAAALIGAREIGFTIVSLTISLIAVLIPLLFMSD 457

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA+T+ ++I+IS   ++++   +   +
Sbjct: 458 VVGRLFREFAVTLAVTIVISAIVSLTLAPMLCAKL 492



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 80/244 (32%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +   A  PV L  V    +  +  ++           +   +    + VA    ++ + 
Sbjct: 248 VVAYRAGGPVRLQDVAEVADGSENRELGAFTDLEPAIIVDVKRQPGANVVAVVDQIKTLL 307

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAIT 698
             +   +P +             R  I    + ++ S   ++  I          +    
Sbjct: 308 PALAASLPATVDLVVLTDRTTAIRASIHDVEMELLFSIALVVAVIFLFLRSPRATIIPSV 367

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +        L G   N   + A+    G+ V+D +V+ + +    +      +  
Sbjct: 368 SVPLSLIGAFAVMYLLGYSLNNLTLMALTIATGFVVDDAIVMIENI---SRYIERGETPL 424

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     V  +++    ++P+       G +   FA+ +A  IV++A  S+ +
Sbjct: 425 AAALIGAREIGFTIVSLTISLIAVLIPLLFMSDVVGRLFREFAVTLAVTIVISAIVSLTL 484

Query: 816 AAPI 819
           A  +
Sbjct: 485 APML 488


>gi|212710233|ref|ZP_03318361.1| hypothetical protein PROVALCAL_01292 [Providencia alcalifaciens DSM
           30120]
 gi|212687040|gb|EEB46568.1| hypothetical protein PROVALCAL_01292 [Providencia alcalifaciens DSM
           30120]
          Length = 1034

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 74/694 (10%), Positives = 197/694 (28%), Gaps = 50/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  IGL       L +  + ++P                   + +   
Sbjct: 9   RRPVLALVVSALIVLIGLFA-----LSKLPIRQYPQLESST-------------ITITTQ 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  S ++       S  Q  + +T+    +R       +V  
Sbjct: 51  YPGASAKLMQGFVTQPIAQAVSSVEGVDYLSSSSVQGSSLVTVRMELNRDSTQALTQVMA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  KL  +    ++  ++ +  ++     +  ++   A   +  + R         
Sbjct: 111 KVNQVRYKLPKEAYDPVIELSSGESTAVAYIGFSSTELAIPA--LTDYLSRVVEPMYSAI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +        + +    D  +L     + A+++      N           F     
Sbjct: 169 DGVAKVQVFGGQQLAMRLWLDADKLAGRGISAAEVAQAVRQNNYQAAPGKVKGEF----- 223

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                           ++    N D        D+     G           I    A  
Sbjct: 224 ---------------VISNVYVNTDLTNVDEFRDLVIRNDGNGLVRLKDVGTIELGAAST 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               ++                +    ++    L   +     P     +          
Sbjct: 269 ETSGLMNGEPAIYLGLFATPTGNPLVIVDGMNKLMPDITKTLPPDVKVEMAFETSRFIKA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      +V+ V+++ +   +  ++   +I L+++   AL+   G ++ L ++
Sbjct: 329 SINQVVSTLVEALLIVIAVIYLCLGSIRSVIIPILAIPLSMLGAAALMMAFGFSINLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +     + +S   +  +G       +    IT       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENVHRHIEEGKSPVLAALIGAREVAGPVIAMTITLAAVYAPI 448

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFF 532
                  G   + FA+T+  ++++S   A+++   M  F++  K+ +     +       
Sbjct: 449 GLMSGLTGALFKEFALTLAGAVIVSGIVALTLSPVMSSFMLNSKQNEGRMARMAETFFET 508

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L     AI     +   +   +   +     +  H     +         + A +    +
Sbjct: 509 LAHYYTAILNFSLKNRWMTGILALGVVVSLPMLYHAAPRELAPVEDQSSVLTAIKSPQHA 568

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +       +     F      ++  +        +      L   +++      + +  
Sbjct: 569 NLEYVERFSRKLHDVFTALPETESTWIINGTDGPSASFGGTNLTSWEQRERPASAIQSDL 628

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
              + G      +    +  +  S   + I + +
Sbjct: 629 QGRV-GDVEGNSIFVFQLPALPGSTGGLPIQMVL 661



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 90/258 (34%), Gaps = 7/258 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    N  V L  V +        + S         +L       G+ +     +  + 
Sbjct: 244 VIRNDGNGLVRLKDVGTIELGAASTETSGLMNGEPAIYLGLFATPTGNPLVIVDGMNKLM 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
             IT+ +P            +  +  I + +  ++ + + ++  I++        +  I 
Sbjct: 304 PDITKTLPPDVKVEMAFETSRFIKASINQVVSTLVEALLIVIAVIYLCLGSIRSVIIPIL 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L +         FG   NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 AIPLSMLGAAALMMAFGFSINLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGKSPV 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E  G  +  ++       P+ +     G++   FA+ +A  ++V+   ++ +
Sbjct: 421 LAALIGAREVAGPVIAMTITLAAVYAPIGLMSGLTGALFKEFALTLAGAVIVSGIVALTL 480

Query: 816 AAPILLFIYDWRAKNARI 833
           +  +  F+ + +    R+
Sbjct: 481 SPVMSSFMLNSKQNEGRM 498



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 81/247 (32%), Gaps = 10/247 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V +     + +      S Q+       F+ +   + +    PG ++ Q           
Sbjct: 765  VKSEDSSMIPLSTVVDISTQVEPNKLTQFNQQNAAIFQAIPAPGVTLGQAVAYLDEMASE 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L        + + I + + +  +++     L  + T+ 
Sbjct: 825  LPAGFSHDWQSDSRQYKQEGNTLA----FAFMAALIIIYLVLAAQYESLVDPLIILITVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     N+     ++TLIG      +++ +   +        +  R  I
Sbjct: 881  LSICGALIPLALGYATLNIYTQIGLVTLIGLISKHGILMVEFANE--LQANEGLDKRHAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             K+    L   + T+ A  I ++P+      G +      + +  G++V    ++F+   
Sbjct: 939  LKAAQIRLRPILMTTAAMVIGLVPLLFATGAGANSRFGLGLVIVTGMLVGTLFTLFVLPT 998

Query: 819  ILLFIYD 825
            I   +  
Sbjct: 999  IYSVLAR 1005


>gi|161723271|ref|NP_301427.2| preprotein translocase subunit SecD [Mycobacterium leprae TN]
 gi|6648084|sp|P38387|SECD_MYCLE RecName: Full=Protein-export membrane protein secD
 gi|3136009|emb|CAA19080.1| protein export membrane protein SecD [Mycobacterium leprae]
          Length = 571

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 123/537 (22%), Positives = 216/537 (40%), Gaps = 41/537 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +   ++  IG+ +       + ++             LG+DL+GG+ + L     D  
Sbjct: 12  RYLSMFLVLFIGVYLLAFLTGDKRVVP-----------RLGIDLQGGTRVTLTARTPDGS 60

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQG 121
                 L      + S +   G+    +    + + ++    D     N+     L+++ 
Sbjct: 61  RPSREALSQAQQIISSRVNGLGVSGSEVVVDGDNLVITVPGNDGNEARNLGQTARLYIRP 120

Query: 122 VNSKLN---VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR---------- 168
           V + L        K      T    + +   +   Q   +  + +               
Sbjct: 121 VLNSLPVQRGQDPKPGSPAGTLPNFAPMPPDHPGAQPRPYLQDPTSSPSSDPMPSPVPTG 180

Query: 169 -----QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
                +       +    ++  + RI  +    Q   +  Q L    + +        + 
Sbjct: 181 AALPGEVPSVEQPAPPDPRKDLAERIAEEKKWRQSTKQSIQFLALQFESTHCDKDDILAG 240

Query: 224 KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
                       +D N   +     ISG  +  +T+  + +    VVD+ F    A  + 
Sbjct: 241 NDDPNLPLATCSTDHNMAYLLAPSIISGDQIQNSTSGMNQRGVGYVVDLQFKSAAADVWA 300

Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN---FTIETAGILAAMLRAGSL 340
           + T  +IG   A  LD  V++ PVIN+AI  G+ QISG    FT  TA  LA +L+ GSL
Sbjct: 301 DFTAAHIGTQTAFTLDSEVVSVPVINEAILGGRTQISGGDPPFTAATARQLANVLKYGSL 360

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P+     E + V A LG  S+  G  A   GL L++L+ ++ Y   GL+  FS+F +  +
Sbjct: 361 PLSFEPSEAQTVSATLGLTSLRAGLIAGAIGLSLVLLYSLLYYRVLGLLTAFSLFCSGTI 420

Query: 401 TLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
             A+L LL      TL L  IAG+++GIG   DS ++  ERI++E R+ +S   ++  G+
Sbjct: 421 IFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGW 480

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            RA  TI   N    +A  VL F   G V+GFA T+GL+ ++ +     +   ++  
Sbjct: 481 VRARKTIVSGNAVTFLAAAVLHFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYL 537



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 44/134 (32%), Gaps = 23/134 (17%)

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDK--------------------VVVYDRMRKNM 748
           G    F +  + T + A+L L+G  +N                      VV ++R++  +
Sbjct: 407 GLLTAFSLFCSGTIIFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEI 466

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      SFR  + +         V  +   F++   +       +  FA  +    ++ 
Sbjct: 467 RE---GRSFRSAVPRGWVRARKTIVSGNAVTFLAAAVLHFLAIGQVKGFAFTLGLTTILD 523

Query: 809 ASSSIFIAAPILLF 822
                 +  P++  
Sbjct: 524 LVVVFLVTWPLVYL 537


>gi|289669040|ref|ZP_06490115.1| RND superfamily protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 1170

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 73/570 (12%), Positives = 157/570 (27%), Gaps = 51/570 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 31  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 76

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 77  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 136

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ K  +L+        I+        +  +    I                ++
Sbjct: 137 L--SLPLETKPPVLLRFNPSTEPIMRLALSPKQAPASDTDAIRQLTSLRRYADEDLKKKL 194

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 195 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDNVITRLKEENVNISGGRLEEGAQR 254

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 255 YLVRTVNQFVDLDEIRNMLVTTQSSSGSAAEAAMQQMYAIAASTGSQAALAAAAEVQSTS 314

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              S    G           + +          L      +     +   +   T     
Sbjct: 315 SSSSSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKEAVELAIYKEGDANTVSTAAALR 374

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 375 KRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 434

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +  SV 
Sbjct: 435 ISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLSVL 494

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
            +   G       +  S +T +   + L F     G   R  A+T+ ++I IS+  ++++
Sbjct: 495 DAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLVVSMTL 554

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +  +             + +          
Sbjct: 555 IPMLSSLKGAPPMAFPDEPSHPDWRPEQRW 584



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 6/207 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           + + +++    +     I   E     I   +       VI 
Sbjct: 355 ELAIYKEGDANTVSTAAALRKRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIG 414

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 415 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVD 474

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +S  D       E     + +++      LP+       G 
Sbjct: 475 DSIVVLESI---AKARERGLSVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 531

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    A+ +A  I ++   S+ +   +
Sbjct: 532 LFRDQALTVAIAIAISLVVSMTLIPML 558



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 74/213 (34%), Gaps = 8/213 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +     D      V E+      + +      +  
Sbjct: 911  AAVAEVLATTGPSEIHRADQTRVAIVSASLKDIDLGGAVREVETMVREDPLAAGVGMHIG 970

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 971  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 1029

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L G    + +++ D++    +L    +  R+ +       L   + 
Sbjct: 1030 GKPISVVVFIGLILLAGLVTKNAIILIDKVN---QLREDGMPKREALIDGARSRLRPIIM 1086

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            T++      LP+AV    G  V    AI +  G
Sbjct: 1087 TTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1119


>gi|319794791|ref|YP_004156431.1| acriflavin resistance protein [Variovorax paradoxus EPS]
 gi|315597254|gb|ADU38320.1| acriflavin resistance protein [Variovorax paradoxus EPS]
          Length = 1090

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/566 (12%), Positives = 161/566 (28%), Gaps = 40/566 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I   G+       +       +P                     +   
Sbjct: 9   RRPIGTVLLTIGIALAGIAAFFVLPVSPLPQVDYPVIS--------------VRASIPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +     +++TL F  SR  +  A +V   +  
Sbjct: 55  SPETMATSVATPLERHLGTIAGVNEMTSTSSVGSSRVTLQFDLSRNIDGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    + N          S V+    +        +    +      ++   +   
Sbjct: 115 SRVDLPATLRSNPTYRKANPAASPVII-LALTSKTKTPGQIYDAVSNIVSQRLSQVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   L  +  E  P  L +   +T  +       N ++   M      +     Q 
Sbjct: 174 DVEIGGGSLPAVRIELLPFALNRYGISTEDVRAAIQASNANRPKGMVQGDGRKLQIYTQT 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +                       +                 +   +       
Sbjct: 234 PALRASD--------------------YASMVVAWRNGAAVRLQDVAEVIDGVEDTRTLG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         + + +   +   T+++   L   L+A   P     V   +  +  GS   
Sbjct: 274 LFNGEPAIIILITRQPSANIIETVDSVRALLPELQAQLPPDVTLQVASDSTNSIRGSLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+ + +   +  +V   +  + ++ T  ++ LLG +L   S+  + 
Sbjct: 334 VELTLVISVLLVVLVVSLFLRSVRATIVPAVATVVALLGTFGVMHLLGFSLNNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E          S   +  +G      T+   +++ +   + L F G
Sbjct: 394 VATGFVVDDAIVVLENTSRHIESGMSRMKAALLGAKEVGFTVLSISVSLVAVFIPLLFMG 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLIPD 536
           G      R FAIT+  +++IS+  +++    M  ++++      K+     L R      
Sbjct: 454 GQVGRLFREFAITLSAAVMISLVISLTTTPMMCAWLLKPGGEHDKNKPQGRLGRMAARSY 513

Query: 537 CIAIQFMRARFWGVGISILFSICSIC 562
              ++           S    +  + 
Sbjct: 514 DWVLKRYEYSLDWALDSKALVMLILV 539



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 14/156 (8%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 +      ++ +  T G   L G   N  ++ A+    G+ V+D +VV +     
Sbjct: 354 RSVRATIVPAVATVVALLGTFGVMHLLGFSLNNLSLMALTVATGFVVDDAIVVLEN---T 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
            +   + +S          E     +  S++     +P+   GG V      FAI ++  
Sbjct: 411 SRHIESGMSRMKAALLGAKEVGFTVLSISVSLVAVFIPLLFMGGQVGRLFREFAITLSAA 470

Query: 805 IVVAASSSIFIAAPILLFI-------YDWRAKNARI 833
           ++++   S+    P++          +D      R+
Sbjct: 471 VMISLVISL-TTTPMMCAWLLKPGGEHDKNKPQGRL 505



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/242 (9%), Positives = 88/242 (36%), Gaps = 9/242 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +   +   ++      +      + +   +        E + K    I   + ++   
Sbjct: 842  SAVAKFEEQSVATSVSHDDGELATTISFNLAEGANLGDAREAIAKAEANIAMPTNVRGAF 901

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFAL 713
                  +++   +  + ++ + + + I + I ++       + + +    +   L    +
Sbjct: 902  AGTAASAQQSQGQQFMLILAALVVIYIVLGILYESLVHPITVLSTLPSAGVGAVLALL-M 960

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            F +EF++ A+  V  LIG    + +++ D   +     +  ++  + + ++        +
Sbjct: 961  FRMEFSIIALIGVFLLIGIVKKNAILIIDFALE--AERSRGLTPLEAVREACLLRFRPIL 1018

Query: 774  YTSMAAFISVL---PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T++AA +  L        G  +     + +  G++ +   ++ +  P++  + D   + 
Sbjct: 1019 MTTLAAALGALPLAIGFGEGAELRRPLGVAIIGGLIASQLLTL-LTTPVVYLLLDKLRRR 1077

Query: 831  AR 832
             +
Sbjct: 1078 GK 1079


>gi|121998768|ref|YP_001003555.1| acriflavin resistance protein [Halorhodospira halophila SL1]
 gi|121590173|gb|ABM62753.1| acriflavin resistance protein [Halorhodospira halophila SL1]
          Length = 1031

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 63/562 (11%), Positives = 159/562 (28%), Gaps = 46/562 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +   V++ ++I  +G +            DR P+                  + +  D
Sbjct: 9   RRHVLAVMISALIVLVGAIA-----YQDIGTDRIPNIDFPM-----------VSVTVHQD 52

Query: 62  E--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + ++  +    +   + +              + +T+ F      +   ++V   +
Sbjct: 53  GADPELMDSAVTDEVERAVNTVPGIDDIQSVSLPGTSVVTVQFDLDVDVDVAFNEVNAKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +   L  D +  ++         I+       Q    A +       +   QI     
Sbjct: 113 SEIVQDLPEDAEAPVVDKVEMDAQPIMWLSL---QGDRTAQDLDRYARNEVRPQIEGITG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +          +  E DP R+         +       +    G              
Sbjct: 170 VGEVRIGGSRERTMRLEVDPDRMAAHNVDAQSIMQALEEEHAQMPGGFL----------- 218

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                    + G        + +      +  +   E G  R        +   LA +  
Sbjct: 219 ---------VGGDTEEMLKLDVEYHDADGLEAMIIAEDGDDRVRFRDIGTVEDGLADMRQ 269

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADLGS 358
                            +  +    I+     L   +R    P     +        L  
Sbjct: 270 LARFNGEPTIGLGVVKVSGANTVAIIDEVKERLDDQIRPQLPPGLDLHISTDESQFILEQ 329

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T A+      +V+++ +   +   +   +I ++++  +A++   G TL   ++ 
Sbjct: 330 IDSLYLTIALGILFAALVMWLFLRNLRSTAIVSLAIPISLMAAIAVIYFFGYTLNSITML 389

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            ++L IG+ VD  I+V E I    ++ +   +  ++       ++ I  +     I   V
Sbjct: 390 AMLLLIGVVVDDAIVVLENIYRHRQQYRQGPMASAISGSNEVFFAVIASTLTLVSIFGSV 449

Query: 477 LFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           +F     G     FA+ +   +L S   A++++  +    +   + +      L + F  
Sbjct: 450 IFMEAIIGRFFESFAVVVAFGVLASSIVALTLIPMLASRFLHVPEQEGAFYRALEQGFQA 509

Query: 535 PDCIAIQFMRARFWGVGISILF 556
            +      +         ++  
Sbjct: 510 IERTYRWSLGYVLRFRWTTLGL 531



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 81/213 (38%), Gaps = 12/213 (5%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V              V E +  +I   +P     +      +   E I    + + +  +
Sbjct: 283 VVKVSGANTVAIIDEVKERLDDQIRPQLPPGLDLHISTDESQFILEQIDSLYLTIALGIL 342

Query: 679 AMLIYIWIRFKWYFALGAI-TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
              + +W+  +   +   +   + + +   +     FG   N   + A+L LIG  V+D 
Sbjct: 343 FAALVMWLFLRNLRSTAIVSLAIPISLMAAIAVIYFFGYTLNSITMLAMLLLIGVVVDDA 402

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI--- 794
           +VV + + ++ + Y         I  S NE     V  S    +S+    ++  ++I   
Sbjct: 403 IVVLENIYRHRQQYRQG-PMASAISGS-NEVFFA-VIASTLTLVSIFGSVIFMEAIIGRF 459

Query: 795 -GSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             SFA+ +AFG++    SSI +A  ++  +   
Sbjct: 460 FESFAVVVAFGVLA---SSI-VALTLIPMLASR 488



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/173 (13%), Positives = 65/173 (37%), Gaps = 10/173 (5%)

Query: 667  RKGIVGV--IISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             + +  +  ++   A L+YI +      +   L  +    L +   L    + G   N+ 
Sbjct: 848  ERAVTAMLFVLFLAATLVYIVLASQFNSFVQPLLIMAAQPLALIGGLLGLWVGGFTLNIY 907

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            ++  ++ L+G    + +++ D    N       +S  + + ++    L   + TS+   +
Sbjct: 908  SMIGMVLLMGLVTKNGILLVD--LTNQYREKRDLSINEALAEACPIRLRPVLMTSLTLIL 965

Query: 782  SVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +++P A     G       A  +  G++ A   ++ +       +  + ++  
Sbjct: 966  ALIPAAAGLGAGSETNAPMAAAIIGGMITAMLLTLAVIPAAYSLLEGYLSRRG 1018


>gi|285019495|ref|YP_003377206.1| rnd superfamily protein [Xanthomonas albilineans GPE PC73]
 gi|283474713|emb|CBA17212.1| probable rnd superfamily protein [Xanthomonas albilineans]
          Length = 1040

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 68/584 (11%), Positives = 157/584 (26%), Gaps = 39/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G+L        +  +   P+                        
Sbjct: 9   RRPIGTALLAIGLFVMGML-----CYLRLSVAALPNISIPVIF---------VQATQAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  +++ + F  +R  ++ A  V   +  
Sbjct: 55  DASTMAATVTAPLERHLGQLPGIDTMRSSSSEGNSQVFMIFQSTRNIDSAAQDVQTAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L               +  ++      D     A E            +       
Sbjct: 115 AQADLPSGLGTPQYEKANPNDAPVIAIALTSD--TQSADELYNVADSLLAQHLRQINGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +  + +   L  +  T   +       N +             +     
Sbjct: 173 SVDIGGASTPAVRVDVNLRALNAMGLTPDDLRNAVRAANVTSPTGFLSDGVSTTAIVAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +   + +                         R        N+           
Sbjct: 233 AVAKAADFGQVVIAQQQ--------------------GRTVRLRDIANVYDGQQDAYQAA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +A  +   T++       ML     P                S + 
Sbjct: 273 WLNGKRAVVMYVFTRAGANIVETVDRVKAQIPMLHTYLQPGTKMTAYFDRTPTIRASLNE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + M +      L+A  ++ L++     ++S+LG TL   S+  +V
Sbjct: 333 VQATLLISLAMVVMTMAMFLRRLAPTLIAAATVPLSLAGAALVMSILGYTLNNLSLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E I     +  S   +  +G      TI     + +   + + F G
Sbjct: 393 IAIGFVVDDAIVVIENIMRHLDEGMSRMDAALVGAREIGFTIVSITASLVAVFIPMLFAG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I +S   ++++   +    +             +    +   +
Sbjct: 453 GIMGLFFREFTVTLVAAICVSAAVSLTLTPMLCSRFLSAHAEPERPGRIGAWLERMHAGM 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +  A  + +  ++L ++  + L+       G+  KG     
Sbjct: 513 LRVYTVALDFSLRHTLLLALTPLLLIVAMVFLLGMMKKGAFPAQ 556



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 63/151 (41%), Gaps = 7/151 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +       ++ G   N  ++ A++  IG
Sbjct: 337 LLISLAMVVMTMAMFLRRLAPTLIAAATVPLSLAGAALVMSILGYTLNNLSLLALVIAIG 396

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           + V+D +VV + +   M+     +S  D       E     V  + +     +PM   GG
Sbjct: 397 FVVDDAIVVIENI---MRHLDEGMSRMDAALVGAREIGFTIVSITASLVAVFIPMLFAGG 453

Query: 792 SV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            +      F + +   I V+A+ S+ +   +
Sbjct: 454 IMGLFFREFTVTLVAAICVSAAVSLTLTPML 484



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 76/213 (35%), Gaps = 6/213 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              +              T   + + +     + +             ++      +V V+
Sbjct: 803  DQYTTMDLSYNLAPDVSTGEADAIIQVTANGLRMPGDIRIADKDDFTAKMQPNSMLVLVL 862

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             +   + I + + ++     +  ++TL       L    +   E ++ ++ A++ LIG  
Sbjct: 863  TAIAVVYIVLGMLYESLVHPVTILSTLPAAGMGALLALWITDTELSVVSMIALVLLIGIV 922

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ D     +   T   +  + + ++        + T+M A ++ +P+AV    G
Sbjct: 923  KKNAIMMID--FALVVERTHGKTPMEAVREACLVRFRPIMMTTMVAILAAVPLAVGLGEG 980

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +     I M  G++V+ S ++     + +  
Sbjct: 981  SELRRPLGIAMIGGLLVSQSLTLLSTPALYVIF 1013


>gi|332529754|ref|ZP_08405708.1| acriflavin resistance protein [Hylemonella gracilis ATCC 19624]
 gi|332040775|gb|EGI77147.1| acriflavin resistance protein [Hylemonella gracilis ATCC 19624]
          Length = 1097

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 54/557 (9%), Positives = 148/557 (26%), Gaps = 64/557 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N  +  ++   +  +GL         +  +D+FP+      +                
Sbjct: 8   LKNPVFATMMMMALVVLGLFS-----YQRLQVDQFPNIEFPVVV---------VSTAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + +           + Q+ + + F  +      A+ V   + 
Sbjct: 54  ASPEIVESEVSKKIEEGVNSIAGINTLTSRSYENQSVVIIEFQLTVDGRKAAEDVREKVA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA--------------------- 159
            +   L  + ++  ++       +I       D     +                     
Sbjct: 114 ALRPSLRDEVEEPRVLRFDPSSRAIWSLAVLGDASGQDSSAGPSQGVSVPPGGSAAGAAA 173

Query: 160 ---------IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
                    +E +    +    ++                 ++     P  L     T  
Sbjct: 174 SAGAQSWSPVELTNWADQVLKKRLENVRGVGAVNLVGGTKREINIYLRPEALEAYGLTPT 233

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           ++       N                      V        + ++      +      V 
Sbjct: 234 QIVEAVRGENQELPLG---------------AVRSSTREIAVQIDARMQRPEDFARIIVA 278

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
                              I      +    +                 +    I+    
Sbjct: 279 RKGGTSGVDTPVRLGQVATIRDGAQELESLALYNGQRTLLLTVQKSQDENTIAVIDGLTK 338

Query: 331 LAAMLRAGS--LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             A L+              +        +    + T    A L ++++F+ +   +  +
Sbjct: 339 AVAELKTQGLLPAGVRLEPIQDGSRPIRVAVHNVRQTLFEGAMLTVLIVFLFLNSWRSTV 398

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   ++ + +I T   +   G T+ + ++  + L +GL +D  I+V E I    +  +  
Sbjct: 399 ITGLTLPIALIGTFLFMQAFGFTINMITLMALSLCVGLLIDDAIVVRENIVRHVQMGKGH 458

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAIS 505
           + +   G       +  + ++ +   + + F G   G     F IT+  ++LISMF + +
Sbjct: 459 YQAALEGTEEIGLAVLATTLSIVAVFLPIGFMGGIIGKFFHQFGITIVAAVLISMFVSFT 518

Query: 506 IVRAMMIFIIRYKKMKS 522
           +   +          + 
Sbjct: 519 LDPMLSSVWPDPNIHQH 535



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 8/153 (5%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + +LI       W   +    TL + +  T  F   FG   N+  + A+   +G  +
Sbjct: 379 GAMLTVLIVFLFLNSWRSTVITGLTLPIALIGTFLFMQAFGFTINMITLMALSLCVGLLI 438

Query: 735 NDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +D +VV    R+N+  +            +   E     + T+++     LP+   GG +
Sbjct: 439 DDAIVV----RENIVRHVQMGKGHYQAALEGTEEIGLAVLATTLSIVAVFLPIGFMGGII 494

Query: 794 ---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                 F I +   ++++   S  +   +    
Sbjct: 495 GKFFHQFGITIVAAVLISMFVSFTLDPMLSSVW 527



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 81/228 (35%), Gaps = 11/228 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                         +   V   +++ +         +       K   E     I  + ++
Sbjct: 858  MREVTITANVHGRSLGEVSADIRQALASTSFPPGYRYRFGGATKNMEESFGYAISALAMA 917

Query: 677  AIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             I + + +  +FK +F  L  +T+L L +   +    LFG   ++ ++  V+ L+G    
Sbjct: 918  IIFIYMILASQFKSFFQPLALMTSLPLTLIGVVLALMLFGSSLSMFSIIGVVMLMGLVTK 977

Query: 736  DKVVVYD---RMRK----NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            + +++ D   R R+            ++    +  +    L   + T++A    ++P+A 
Sbjct: 978  NAILLLDFAIRAREGGLDTEGRPVPGMAREQALLTAAQVRLRPILMTTLAMIFGMVPLAF 1037

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G          +  GI+ ++  ++ +      ++ D+     R+
Sbjct: 1038 ALSEGSEQRAPMGQAVIGGIITSSLLTLVVVPVAYCYLDDFAQWLRRL 1085


>gi|312143115|ref|YP_003994561.1| acriflavin resistance protein [Halanaerobium sp. 'sapolanicus']
 gi|311903766|gb|ADQ14207.1| acriflavin resistance protein [Halanaerobium sp. 'sapolanicus']
          Length = 1035

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/557 (11%), Positives = 174/557 (31%), Gaps = 50/557 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N    +     I  +G+   L        +   P   P               + ++  
Sbjct: 9   KNKYTTIAAVIAIILLGIAAVL-----ALNIQLNPDIDP-------------VIVTIQTS 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +   +    +E    ++          +  + IT+ F   +     A  V  
Sbjct: 51  YQGVSASDIAEQINEPLEEELGTIEGIDSISSDAMEGISIITVEFDYDQDINVAAVDVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  + ++L  D  +  +   +  +  I+    +        I+       Q  +++ + 
Sbjct: 111 TVNQIRNQLPADIDEPQVKKFSTADRPILTLAVSGP---RSEIDLRTLADNQLTNRLQLV 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                       + ++    D  +L     + A++                        D
Sbjct: 168 SGVANIDVYGGKVREIQINVDRDKLNSYNISIAQIVNRL--------------------D 207

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +                  + K  + + ++      ++  +      +    A +
Sbjct: 208 SENVNLAGGRLSRDESEYSIRTIGEYKNLEEMKNLIIHSHNSQNIYLRDIAEVNDSFAEL 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +            +   +    +         L      ++   + +        
Sbjct: 268 RNKFRVDGEETVAISIQKQQDANTVQVVNNIKAELTNLDREFPDLEF-HITDDQSDLVRL 326

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
             +    T  I   L ++V+F+ +   +  L    SI    +LTLAL+     +L + ++
Sbjct: 327 VINNMASTLLIGVLLTILVIFLFLDSWRSTLAVTISIPTTFVLTLALMRAFNLSLNMVTM 386

Query: 418 AGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            G++L IG+ VD++I++ E +     + N+S F +   G +     +     T++I    
Sbjct: 387 TGLILSIGMLVDNSIVIIENVTRHFEELNKSAFEAAIDGTNEMILAVIAGTTTSMIVLTP 446

Query: 477 LFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG      R  ++T+  +   S+ ++ +IV  ++  +++ K +K  + +  + F  
Sbjct: 447 VMFIGGFVQQMFRPLSMTLLFAWTGSVLSSFTIVPLVLSLVLKAKDIKKSNYSKFNIFKK 506

Query: 534 IPDCIAIQFMRARFWGV 550
           I    +    ++R   +
Sbjct: 507 ITSAFSAVLDKSREIYL 523



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 84/253 (33%), Gaps = 12/253 (4%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++ + L  +    +S       F+    E   +   + Q  ++V     ++     +   
Sbjct: 249 SQNIYLRDIAEVNDSFAELRNKFRVDGEETVAISIQKQQDANTVQVVNNIKAELTNLDRE 308

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
            P      T+     +   +       +I   + +L+       W   L    ++     
Sbjct: 309 FPDLEFHITDDQSDLVRLVINNMASTLLIGVLLTILVIFLFLDSWRSTLAVTISIPTTFV 368

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLID 762
            TL     F +  N+  +  ++  IG  V++ +V+ +   R  + +       S  +   
Sbjct: 369 LTLALMRAFNLSLNMVTMTGLILSIGMLVDNSIVIIENVTRHFEELNK-----SAFEAAI 423

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              NE +   +  +  + I + P+   GG    +    ++ + F    +  SS F   P+
Sbjct: 424 DGTNEMILAVIAGTTTSMIVLTPVMFIGGFVQQMFRPLSMTLLFAWTGSVLSS-FTIVPL 482

Query: 820 LLFIYDWRAKNAR 832
           +L +        +
Sbjct: 483 VLSLVLKAKDIKK 495



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 74/223 (33%), Gaps = 7/223 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E            +  A + V   +   + +    +              E I +  V +
Sbjct: 816  ENMQYTLDILGFTEDRAMSMVTSDINSILEDYSLPAGYNAEITGEQDDMEEAIGRLAVSL 875

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I +   + + +  +F      L  + +L L++   +    +     ++ A+  V+ L G 
Sbjct: 876  IFAIAFIYLLLVSQFKSLLHPLTIMLSLPLELVGVVAVLLITNTYLSMPAMMGVILLSGI 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +VND + + + + +        +S    I +         + T+ +    + P+A+    
Sbjct: 936  AVNDAIHLIEFIIE---REKEGMSTFAAIYEGARLRFRPILMTTFSTLAGMTPLALELAV 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G       A  +  G+  +    + I   +     D + K A+
Sbjct: 993  GTEQYSPLAKVVMGGLFSSTMLLLIIVPVVYSLFEDLKLKLAK 1035


>gi|39997875|ref|NP_953826.1| AcrB/AcrD/AcrF family protein [Geobacter sulfurreducens PCA]
 gi|39984820|gb|AAR36176.1| AcrB/AcrD/AcrF family protein [Geobacter sulfurreducens PCA]
          Length = 1036

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/516 (12%), Positives = 144/516 (27%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL       + Q       +                   V    
Sbjct: 9   RRPVLALVVSLIIVIAGLQAIRSLNVRQYPRSENAAVT--------------VTTVYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+    +   +                + I +    +        +++  +  
Sbjct: 55  SADLVRGFVTTPLERAIAAADGIEYMESQSTLGLSTIKVRLKLNYDGTKALAEISSKVDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  ++   +          +    ++    E +  ++R    ++   +   
Sbjct: 115 VRRDLPPEAEVPVINIESADSEFASAYLSFSSDILQQ-NEITDYLVRIVQPRLSAIQGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  + A++                       + G   
Sbjct: 174 RADVLGARTFAMRIWLKPDRMAALNVSPAQVR------------EALAANNFLAALGRTK 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++          F          +                ++           
Sbjct: 222 GSLIQVNLTANTNLNTVEEFRQ--------LVVRRQDGALVRLSDIADVSLGAEDYDAEV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +    I+      A ++          V          +   
Sbjct: 274 RFSGQTAVFMGIWPLPNANSLDVIKRVRTEMAAIQRDLPSGLQARVAYDATDYIDNAIRE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T +    +V++V+F+ +   +  LV   +I +++I  + L+   G T+ L ++  IV
Sbjct: 334 VLKTLSETLLIVIVVIFLFLGSLRSSLVPVVAIPVSLIGAVFLMQAFGFTVNLLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +    R+ QS   +  +G       I    IT     + +   G
Sbjct: 394 LSVGLVVDDAIVVVENVERHMREGQSPLEAAFLGARELVGPIIAMTITLAAVYLPIGLQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R FA T+  ++ IS   A+++   M    
Sbjct: 454 GLTGSLFREFAFTLAGAVTISGVVALTLSPVMSAKF 489



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 83/233 (35%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS +       +  D   +       F+        +S+   + +      I   +P 
Sbjct: 254 VRLSDIADVSLGAEDYDAEVRFSGQTAVFMGIWPLPNANSLDVIKRVRTEMAAIQRDLPS 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                            IR+ +  +  + + +++ I++       +L  +  + + +   
Sbjct: 314 GLQARVAYDATDYIDNAIREVLKTLSETLLIVIVVIFLFLGSLRSSLVPVVAIPVSLIGA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +     FG   NL  + A++  +G  V+D +VV + +    +      S  +       E
Sbjct: 374 VFLMQAFGFTVNLLTLLAIVLSVGLVVDDAIVVVENV---ERHMREGQSPLEAAFLGARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +G  +  ++      LP+ + G   GS+   FA  +A  + ++   ++ ++ 
Sbjct: 431 LVGPIIAMTITLAAVYLPIGLQGGLTGSLFREFAFTLAGAVTISGVVALTLSP 483



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 60/184 (32%), Gaps = 23/184 (12%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKW----------YFALGAITTLILDIT------KTLGF 710
             K +    ++ + + + +  +F               L     LI               
Sbjct: 842  NKFLPAFALAIVLIFLVLAAQFNSFRDPFVILAGSVPLAIFGALIFTFLKMPDPNVAFWT 901

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                    N+ +   ++TL+G    + +++ +      +     +S  D + ++    L 
Sbjct: 902  HGWT-TTLNIYSQVGLVTLVGLVSKNGILIVEFAN---QPQLQGLSKHDAVRQAAMTRLR 957

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T+ A      P+ +    G +   S  + +  G+ V    ++F+   I + +    
Sbjct: 958  PIMMTTAATIAGHFPLTLVSGAGAAARNSIGLVLVGGMFVGTLFTLFVVPSIYMLVARDH 1017

Query: 828  AKNA 831
            +++ 
Sbjct: 1018 SRDR 1021


>gi|145589209|ref|YP_001155806.1| acriflavin resistance protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047615|gb|ABP34242.1| acriflavin resistance protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 1032

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/660 (12%), Positives = 175/660 (26%), Gaps = 38/660 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L       G +        +  +   PS                    L   
Sbjct: 9   RRPVMTVLLSIATVIAGAVA-----YVKIPVAALPSFNTPVI---------SVSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   + +  ++  S +    +   +       ITL F + R  +  A  V   L  
Sbjct: 55  SPENMAASVALPLEKEFSTIDGITVISSTNSLGSTSITLEFNNDRDIDKAAVDVQAALLR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L ++              + VL             + +          +       
Sbjct: 115 AQKRLPIEMTVPPSYRKINPADTPVLVVRMS-SPSISLSDLNQYAENLLSPNLSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +     P  L     T   ++      N++    +              
Sbjct: 174 QVLVYGAKRYAVRVRVHPDALANRNLTVDDVATAINKANSNSPVGVLDGP---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN      +   ++   +      +      + +    V    
Sbjct: 224 ----------RQAITIYANPQMVQPEEFANLIISQKNGLPIYLKDVAEVVESYEDVKTLA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    + +   L   L+          +      + + +   
Sbjct: 274 SSNGERSIAIAVLRQPSANTVEVVNSVKELLPQLQKQMPESVKLQLLNDRSLSIIEAIHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A+   LV++V+F+ + +    ++   S+ +++I    LL  LG +L   S+ GI 
Sbjct: 334 VNLTLALTVLLVVLVIFLFLKHVSATVIPSISLPISLIGAFFLLYFLGYSLDNISLLGIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E I     +      +   G      TI   +I+ +   + LFF  
Sbjct: 394 LAVGLVVDDAIVVLENIMRYVEEGMDPLKASLKGSKEVGFTIISISISLVAVFIPLFFMA 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FA+ + LSIL+S   ++++V  +    +        +     +F  I D +
Sbjct: 454 GPIGLLFREFAVVVSLSILVSAVVSLTVVPMLCSRFLPKPGQHPKEYAINKKFDRIFDWM 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              ++      +    +    ++       + +    KG      +              
Sbjct: 514 LKTYIHYLDLALKNRKVVLWGALSTFVITVVLFVNSPKGFFPEEDIGQIQATTEASEDIS 573

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
               +            +  V          A +         I +        +  + G
Sbjct: 574 FKAMLALQDQAAALVNTDPNVDSSISVIGGGASSGYNTGRIFIILKPKSDRQKMSKVMEG 633



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +    +L + +          G   +  ++  +   +G  V+D +VV + +   M+
Sbjct: 356 VSATVIPSISLPISLIGAFFLLYFLGYSLDNISLLGITLAVGLVVDDAIVVLENI---MR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +       K   E     +  S++     +P+    G +      FA+ ++  I+
Sbjct: 413 YVEEGMDPLKASLKGSKEVGFTIISISISLVAVFIPLFFMAGPIGLLFREFAVVVSLSIL 472

Query: 807 VAASSSIFIAAPI 819
           V+A  S+ +   +
Sbjct: 473 VSAVVSLTVVPML 485



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 75/198 (37%), Gaps = 6/198 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
               + ++    EI    +I  +      + +      ++ ++ +   + I + + ++ + 
Sbjct: 821  DATKKIEAYTKEIGLPPSIITSYGGDAAVFKSNQSGQLILILSALGVIYILLGVLYESYI 880

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  +  L       +    +FG E  + A   +L LIG    + +++ D         
Sbjct: 881  HPLTILAGLPSAAIGAILALRIFGFELTIVASIGILLLIGIVKKNAILMIDFALD--AQR 938

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               ++    I ++        + T++AA +  LP+A     G  +     I +A G++ +
Sbjct: 939  NQGMAPEKAIREACILRFRPIMMTTVAALMGALPIAFGLGAGAELRQPLGISVAGGLIFS 998

Query: 809  ASSSIFIAAPILLFIYDW 826
               ++ I   I L++  +
Sbjct: 999  QFVTLIITPVIYLYLDKY 1016


>gi|317508683|ref|ZP_07966338.1| protein-export membrane protein SecD [Segniliparus rugosus ATCC
           BAA-974]
 gi|316253004|gb|EFV12419.1| protein-export membrane protein SecD [Segniliparus rugosus ATCC
           BAA-974]
          Length = 559

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 118/557 (21%), Positives = 211/557 (37%), Gaps = 44/557 (7%)

Query: 2   RNNP----WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           R +        +   ++   GL   +     +  +             LG+DL+ G+ + 
Sbjct: 3   RRSRGMQPLQYLTVFVLFLAGLYSLVLFTGDKKKIP-----------HLGIDLQSGTRVT 51

Query: 58  LEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD--SRFKENIA 112
           L     D  D     L++  + +   +   G+    +    + + ++         + + 
Sbjct: 52  LTARTLDGKDPDQNSLKLAKNIIEQRVNGLGVAGSEVLIQGSNLVITVPGEEGSQAKTLG 111

Query: 113 DKVTLFLQGVNSKL-------------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
               L+++ V                                      +           
Sbjct: 112 QTARLYIRPVAKDPVKGEAMVWNKETAPDMFAPPPPPAPPANGEQAPPAGEPAPAGQDVT 171

Query: 160 IEQSMEI--IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
            EQ+ EI   R       +     Q    +  L+ L   +  ++L +        +   +
Sbjct: 172 EEQAKEIQQARAIRQSPDVLVKVSQEEIQNIRLMMLTDPEGTAKLVEQKFGPLDKAVKSL 231

Query: 218 L----PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
                                 +DG + LV +   I G  ++ A + FD +     V +S
Sbjct: 232 DCSKPDPLRGNDDPKLPLVTCSTDGKEKLVLEPSIIDGQEISEAGSQFDNQRGTWSVSLS 291

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
           F   G   + + T  ++G   A+ LD RV++ PVI     +G  QI+G+F+   A  LA 
Sbjct: 292 FKPHGQEIWSKYTEGHVGTQTAITLDSRVVSHPVIQGV-INGSTQITGDFSATQARELAN 350

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
           +LR GSLP+  +  E + + A LG  S+  G  A V GLVL++L+ +  Y   G +A  S
Sbjct: 351 VLRYGSLPLSFSSSEAQTISATLGLASLRAGLIAGVVGLVLVLLYSLFYYRALGFLALLS 410

Query: 394 IFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           + L  +   A++ LL    G TL L  IAG ++GIG+  DS ++  ERI++E R+ +S  
Sbjct: 411 LILTGVANYAVVVLLGRWIGFTLDLAGIAGFIIGIGMTADSFVVYFERIKDEVREGRSFR 470

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++   + RA  TI   N    IA  VL+    G VRGFA T+GL+ ++ +     +   
Sbjct: 471 SAVPRAWERARRTILSGNAVTFIAAAVLYILAIGEVRGFAFTLGLTTIMDLVVVFLVTHP 530

Query: 510 MMIFIIRYKKMKSIDIN 526
           ++               
Sbjct: 531 LVHAASTRAWWAKPSRT 547



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 79/224 (35%), Gaps = 10/224 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +  +       GD  A          +   +    +    + +   +    +R G++  +
Sbjct: 327 QGVINGSTQITGDFSATQARELANVLRYGSLPLSFSSSEAQTISATLGLASLRAGLIAGV 386

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLI 730
           +  + +L+Y    ++      A+ +LIL          L G       +L  +A  +  I
Sbjct: 387 VGLVLVLLYSLFYYR-ALGFLALLSLILTGVANYAVVVLLGRWIGFTLDLAGIAGFIIGI 445

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G + +  VV ++R++  ++      SFR  + ++        +  +   FI+   + +  
Sbjct: 446 GMTADSFVVYFERIKDEVRE---GRSFRSAVPRAWERARRTILSGNAVTFIAAAVLYILA 502

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPIL--LFIYDWRAKNAR 832
              +  FA  +    ++       +  P++       W AK +R
Sbjct: 503 IGEVRGFAFTLGLTTIMDLVVVFLVTHPLVHAASTRAWWAKPSR 546


>gi|134300782|ref|YP_001114278.1| acriflavin resistance protein [Desulfotomaculum reducens MI-1]
 gi|134053482|gb|ABO51453.1| acriflavin resistance protein [Desulfotomaculum reducens MI-1]
          Length = 1044

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/691 (9%), Positives = 179/691 (25%), Gaps = 53/691 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +L   +  +GL       LP+  +D +P       +              E   
Sbjct: 10  RPVAISMLIIALVFLGLFS-----LPRLAVDLYPDMELPIAV---------VVTNYEGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +            +   + + + F      +N A ++   +  V
Sbjct: 56  PAEVEKLVTKPIESSVATTANIKEIRSRSQNGISLVIVQFNWGTNMDNAAIELREKIDYV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D K   ++     +  I+             ++           ++   +    
Sbjct: 116 KGALPSDVKSPRVMKLDPNQAPIISFSVTGT----DVVKLKKIAEDTIQSRLERIDGVAS 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S     ++    DP+++      T ++       N +    +        +      
Sbjct: 172 VSISGGKTREIKVILDPAKMEAYGLGTNQVMQAIASDNITGTAGLVDKGSNETAIRVVGE 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                E+                    V ++   MG           I            
Sbjct: 232 YNTLEELK------------------QVRVNLPGMGNNSIALGDLATIEDSFKKENKFAF 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +              +     +       ML                      S    
Sbjct: 274 VDSKPSLGLDVMKSTGANTVQVAKHVLQEVEMLNKTLPAGVKITTVVDMSKFIQQSIDNV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L + +L++ +   +  +V    I +++I T  L+   G T+ + S+ G+ L
Sbjct: 334 VYHGLVGGLLAVAILYLFLRNFRSTIVVALVIPISIIATFTLMYFGGQTINMLSLGGLAL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
           G+G  VD +++V E I    +   +V  +  +G +   + +  S    ++  + + F   
Sbjct: 394 GLGSLVDFSVVVLESIYRYRQNGFNVIEAAKLGTAEVGNAVTASAAAQVVVFMPIVFVQG 453

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------IRYKKMKSIDI 525
             G   +  A+T+  S + ++F A+++V  +   +                   +     
Sbjct: 454 LAGILFKPMALTVSFSHIAALFAALTLVPMLSSRLLKNVSPSDETLPTGQTKNPVIIFGR 513

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +       +        L  +  +              +G I + +  
Sbjct: 514 AMSKLNTQYGFLLNWSLRNRKKVVGVTVALLILSIVATPLIGTEFIPTMDQGEITVKLDM 573

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                +         L+                V    Q       +     ++ K+  +
Sbjct: 574 PAGTKVEETSKVAADLEKLARYQVKEIDRIFTTVGTGGQLSFLGVGSGDQASLQIKLKPL 633

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              +      +   + + + I    + V ++
Sbjct: 634 AERNISTEQAVEKLRNAMKDIPDADITVTLA 664



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 85/242 (35%), Gaps = 7/242 (2%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + V  +  +      +                          V + +  ++ ++      
Sbjct: 788  ARVPVSAVATIESHHAPTEITRTAQSREVRISADISGRDMGSVNKDIMDELNKLALPEGY 847

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGF 710
              T     K   +  +   + +++S I + + +  +F+  F     + +L       +  
Sbjct: 848  TITSGGQAKDMADSFKSLAMALVLSVILVFMVMAAQFESLFQPFIIMFSLPPTFIGVIFG 907

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              + G   ++ A+   + L+G  VN+ +V+ D +     L     +    I ++    L 
Sbjct: 908  LGITGHHLSVPAMIGGIMLVGIVVNNAIVLVDYIN---TLRKRGYNRNQAILEAGPVRLR 964

Query: 771  RSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T++   +++LP+A  GG         A+ +AFG+ ++   ++ +   +     D  
Sbjct: 965  PILMTALTTILALLPLAFGGGEGSEGQAPMAVVVAFGLTLSTLITLVLVPVVYTIFDDLG 1024

Query: 828  AK 829
             K
Sbjct: 1025 KK 1026


>gi|328545109|ref|YP_004305218.1| RND efflux transporter [polymorphum gilvum SL003B-26A1]
 gi|326414851|gb|ADZ71914.1| RND efflux transporter [Polymorphum gilvum SL003B-26A1]
          Length = 1024

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/542 (12%), Positives = 148/542 (27%), Gaps = 39/542 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G        +    + ++P                    +    
Sbjct: 9   RRPVLSTVVSLLILLLGA-----QGVMNMSVRQYPKIDETVIT---------VSTIFVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+     +  +  +             + +++    +   +    +V   +Q 
Sbjct: 55  SSDLVQGFITTPIAKAVASAEGVDYVTSKSSLGLSTVSVHMRLNTDPDKALTEVISKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  + +  ++   T +  +I+      D       + +  + R    Q+ I +   
Sbjct: 115 VRGQLPTEAEDPVIQKGTGQSFAIMYLSVLSD--HMSPQQITEFVSRVIQPQLAIVDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP RL     T A++       N           ++      + 
Sbjct: 173 DAQILGEQTFAMRIWIDPVRLASRSVTAAEVLAAIQSANFLSAPGKTENEYVAYQIETRT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +     GA          +           
Sbjct: 233 TLQSPEAFGA--------------------LPVRSSGAEVVRLHDVARVELGSESTDTRV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +   T          L+A         V   +      S   
Sbjct: 273 SFGGRQGVFLGIMPTPSANPLDTAAGVRAELPRLQANLPQGMDMQVVYDSTKFISASIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +V++V+ + +   +  L+   +I L++I     L  L  +L   ++  +V
Sbjct: 333 VFKTIAEAVVIVILVILLFLGSFRAVLIPIVTIPLSLIGVCFFLWSLDYSLNTLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I+V E I     +      +  +G    +  +    IT       + F  
Sbjct: 393 LAIGLVVDDAIVVVENIHRHLEEGLKPMQAAIVGMREIFGPVIAMTITLGAVYAPIGFAQ 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  ++ IS F AI++   M   ++     +       +   L     
Sbjct: 453 GLTGALFREFAFTLAGAVFISGFVAITLSPMMSARLLSAHASRFQVFVDRTFTGLANWYG 512

Query: 539 AI 540
             
Sbjct: 513 RR 514



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ L +     F        N   + A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRAVLIPIVTIPLSLIGVCFFLWSLDYSLNTLTLLAMVLAIGLVVDDAIVVVENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMA 802
              +     +         + E  G  +  ++       P+       G++   FA  +A
Sbjct: 411 ---RHLEEGLKPMQAAIVGMREIFGPVIAMTITLGAVYAPIGFAQGLTGALFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             + ++   +I ++ 
Sbjct: 468 GAVFISGFVAITLSP 482



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ + + + +  +F+ +      + T+ L I   +    L     N+     ++T
Sbjct: 847  VIAFALAIVVIYLVLAAQFESFRDPFIIMMTVPLSIFGAIVPLNLGLGTLNIYTQVGLIT 906

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G      +++ +    NM+      S R  I ++  E L   + T+ A  + VLP+ +
Sbjct: 907  LVGLITKHGILMVE--FANMQRELHGKSKRAAIVEAARERLRPILMTTGAMVLGVLPLVM 964

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G S   S  + ++ G+ V    ++F+     +++ 
Sbjct: 965  AEGAGASARYSIGLVISTGLSVGTIFTLFVVPMFYMYVG 1003


>gi|288958603|ref|YP_003448944.1| multidrug resistance protein [Azospirillum sp. B510]
 gi|288910911|dbj|BAI72400.1| multidrug resistance protein [Azospirillum sp. B510]
          Length = 1044

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/674 (9%), Positives = 164/674 (24%), Gaps = 38/674 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L + +   GL         Q      P                     L   
Sbjct: 9   RRPVMTILLTAALILSGLAA-----YRQLPTAALPRVDFPVV---------SVTATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        +     + I + F   R  +  A  V   +  
Sbjct: 55  SPETMAASVAGPLEREFSTIAGIDTITSNSTLGNSSIIIQFVLDRDIDAAAADVQAAIAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +                VL   +++       + +         ++       
Sbjct: 115 SQRSLPAEMTTPPSYRKVNPADQPVLF-LSLNSPTLPLAKLNDIAETLIQPKVATLPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  + +P+ L        ++       N +                 Q 
Sbjct: 174 QVQIYGSQKFAVRVQINPNALALRGIGIDELQKAMTAANANTPVGTL------TGQQQQL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           ++    ++                      +                 +   +       
Sbjct: 228 VIAANPQL--------------PDADAFRKLIVAYRNNAPVRLGDVAQVLDSVENTRTAS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++    L  + +          V      +   +   
Sbjct: 274 WLNGTRSIMLAIQRQPDANTVEVVDRVRALVPIFKTQLPAAADIKVVNDRSESIRQAVED 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      L+   ++ +++I T   + ++G ++   S+  + 
Sbjct: 334 VQFTLGLTIVLVVLVIFLFLRRLSATLIPALAVPISLIATAGGMHVMGFSIDNISLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +    F +   G      TI    ++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMMENIVRYVEEGMKPFEAAIKGAREIGFTILSITLSLVAVFIPILLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+ + +SI  S F ++++   M    + ++     +             I
Sbjct: 454 GVVGRLFHEFAMVVTMSIGASAFVSLTLTPMMCSRFLVHQPHGHEEGWFGRTLEAGFSAI 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              + R   W +    L  +  I  +    + Y    KG      +    V         
Sbjct: 514 LNGYARTLRWTLRHRPLMGLVMIGTVIGTAMLYQAIPKGFFPTEDIGQIQVTTEARADIA 573

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                          + N  V            T     +   +                
Sbjct: 574 FPSMAELQQQVAAIMKANPAVVDVISSVGVGGSTGNQGRMFITLKPRDQRPPATEVIQQL 633

Query: 659 PKISRELIRKGIVG 672
            +    +    +  
Sbjct: 634 RRQVNGIPGMAVYM 647



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 85/241 (35%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +    N PV L  V   L+S++    +          L   +    ++V     +  +  
Sbjct: 246 VAYRNNAPVRLGDVAQVLDSVENTRTASWLNGTRSIMLAIQRQPDANTVEVVDRVRALVP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITT 699
                +P +          +  R+ +      + ++ + +++ I     +    L     
Sbjct: 306 IFKTQLPAAADIKVVNDRSESIRQAVEDVQFTLGLTIVLVVLVIFLFLRRLSATLIPALA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T G   + G   +  ++ A+   +G  V+D +V+ + +   ++     +   +
Sbjct: 366 VPISLIATAGGMHVMGFSIDNISLMALTLAVGLVVDDAIVMMENI---VRYVEEGMKPFE 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              K   E     +  +++     +P+ + GG V      FA+ +   I  +A  S+ + 
Sbjct: 423 AAIKGAREIGFTILSITLSLVAVFIPILLMGGVVGRLFHEFAMVVTMSIGASAFVSLTLT 482

Query: 817 A 817
            
Sbjct: 483 P 483



 Score = 41.2 bits (94), Expect = 0.84,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 91/294 (30%), Gaps = 9/294 (3%)

Query: 538  IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                    R      +       +  L     +                + V L      
Sbjct: 729  TLYSAFGQRQVSTIYTPSNDYQVLIELEPKYQSDDSSLSRVYVRSATTGKLVPLDAFARV 788

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
              +     ++ Q           L        A   +    ++        +    T  V
Sbjct: 789  ERTAGALAVNHQGQLPAVTLSFNLTPGASLGQAVDMIRVSEREMGLPPTITTGFAGTAQV 848

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
                           V++  I + +   +   +   L  ++ L       L    LF +E
Sbjct: 849  FQDAQAGQALLLSAAVLVIYIVLGV---LYESFIHPLTILSGLPSAAIGALATLMLFDVE 905

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             ++ A+  +L LIG    + +++ D   +  +     +S RD I+++        + T+M
Sbjct: 906  LSVIAIIGILMLIGIVKKNAIMMIDFAVEARR---NGMSARDAIEQACLLRFRPIIMTTM 962

Query: 778  AAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            AA +  LP+A+  G    +     + +  G+ V+   +++I   + L++ D+  
Sbjct: 963  AAIMGTLPIAIAQGAAAELRQPLGLAVVGGLCVSQVLTLYITPSLYLYMEDFGR 1016


>gi|319763733|ref|YP_004127670.1| acriflavin resistance protein [Alicycliphilus denitrificans BC]
 gi|317118294|gb|ADV00783.1| acriflavin resistance protein [Alicycliphilus denitrificans BC]
          Length = 1041

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/557 (13%), Positives = 156/557 (28%), Gaps = 38/557 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G +      +       +P+                    L    
Sbjct: 10  RPVATMLLTIGLALAGAVSFFLLPVAPLPQVDYPTIS--------------VTASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +               +ITL F  SR  ++ A  V   +   
Sbjct: 56  PDTMAATVATPLERSLGAIAGVNEITSRSTLGNTRITLQFDLSRTVDSAAHDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L      N          + ++    +        +           ++   E   Q
Sbjct: 116 RTLLPSGMPSNPTYRKINPADAPIMI-LALTSSSLTRGQMYDAASTVIAQKLSQVEGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   L  +  E DP RL     +  ++                         GN   
Sbjct: 175 AAVSGGALPAVRVELDPLRLAANGISLEQVRSAIT--------------------GNNAN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                     H      N   +       +       +        ++   +  V +  V
Sbjct: 215 RPLGAVEREDHYWQLATNDQARVAAEYAPLVLRWNNGQAVRLSDVADVLDSVQDVRNYGV 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   L+A         V          S    
Sbjct: 275 ANGKPAILLQVYKQPGANILEAVDKVRALLPQLKASIPAAIDLTVVSDRTPTLRASVQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +   LV++V+F+ +  G+  LV   ++  ++  T  ++ L G TL   S+  + +
Sbjct: 335 ERTLLLAVALVILVVFLFLRNGRAALVPAVAVPASLAGTFGVMYLAGYTLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +     + +S   +   G      T+   +++ +   V + F G 
Sbjct: 395 ATGFVVDDAIVVLENVLRHMDRGKSALQAALDGTREIGFTVVSMSLSLIAVFVPILFMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+ M  +IL+SM  +++    M   ++R  + ++      +R       I 
Sbjct: 455 IVGRFFREFAVVMSSAILVSMAVSLTTTPMMCAHLLRAPQAQAAPRRAWARVAAWLGRIE 514

Query: 540 IQFMRARFWGVGISILF 556
               R     +   +  
Sbjct: 515 RASRRLYRRTLAWGLRH 531



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 52/139 (37%), Gaps = 7/139 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                   AL     +   +  T G   L G   +  ++ A+    G+ V+D +VV + +
Sbjct: 351 LFLRNGRAALVPAVAVPASLAGTFGVMYLAGYTLDNLSLMALTVATGFVVDDAIVVLENV 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++      S          E     V  S++     +P+   GG V      FA+ M
Sbjct: 411 ---LRHMDRGKSALQAALDGTREIGFTVVSMSLSLIAVFVPILFMGGIVGRFFREFAVVM 467

Query: 802 AFGIVVAASSSIFIAAPIL 820
           +  I+V+ + S+    P++
Sbjct: 468 SSAILVSMAVSL-TTTPMM 485



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 92/241 (38%), Gaps = 6/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +    +   +               + Y     V+ ++  + ++  +  +    +++ + 
Sbjct: 785  TAFARIATTNTPLAVSHQGGTPASTISYSLAPGVSLSQANDAIRAAVARLGVPVSVRGSF 844

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                   ++ +    + ++ + + + + + + ++     L  ++TL       L    LF
Sbjct: 845  SGTAGAFQQSLAGQPLLILAAILTIYLVLGVLYEDLVHPLTILSTLPSAGVGALLALMLF 904

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              EF+L A   V+ LIG    + +++ D      +      +    I ++ +  L   + 
Sbjct: 905  KTEFSLIAFIGVILLIGIVKKNAIMMID--FALSRERGGHTTPAQAIYRACDLRLRPILM 962

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS+AA +  LP+A+    G  +     + +  G++V+   +++    + + +   R +  
Sbjct: 963  TSLAAIMGALPLALGQGIGAELRRPLGLAIVGGLLVSQLLTLYTTPVVYVQLDRLRRRVN 1022

Query: 832  R 832
            R
Sbjct: 1023 R 1023


>gi|298506808|gb|ADI85531.1| efflux pump, RND family, inner membrane protein, AcrB/AcrD/AcrF
           family [Geobacter sulfurreducens KN400]
          Length = 1036

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 64/516 (12%), Positives = 144/516 (27%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL       + Q       +                   V    
Sbjct: 9   RRPVLALVVSLIIVIAGLQAIRSLNVRQYPRSENAAVT--------------VTTVYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+    +   +                + I +    +        +++  +  
Sbjct: 55  SADLVRGFVTTPLERAIAAADGIEYMESQSTLGLSTIKVRLKLNYDGTKALAEISSKVDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  ++   +          +    ++    E +  ++R    ++   +   
Sbjct: 115 VRRDLPPEAEVPVINIESADSEFASAYLSFSSDILQQ-NEITDYLVRIVQPRLSAIQGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  + A++                       + G   
Sbjct: 174 RADVLGARTFAMRIWLKPDRMAALNVSPAQVR------------EALAANNFLAALGRTK 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++          F          +                ++           
Sbjct: 222 GSLIQVNLTANTNLNTVEEFRQ--------LVVRRQNGALVRLSDIADVSLGAEDYDAEV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +    I+      A ++          V          +   
Sbjct: 274 RFSGQTAVFMGIWPLPNANSLDVIKRVRTEMAAIQRDLPSGLQARVAYDATDYIDNAIRE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T +    +V++V+F+ +   +  LV   +I +++I  + L+   G T+ L ++  IV
Sbjct: 334 VLKTLSETLLIVIVVIFLFLGSLRSSLVPVVAIPVSLIGAVFLMQAFGFTVNLLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +    R+ QS   +  +G       I    IT     + +   G
Sbjct: 394 LSVGLVVDDAIVVVENVERHMREGQSPLEAAFLGARELVGPIIAMTITLAAVYLPIGLQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R FA T+  ++ IS   A+++   M    
Sbjct: 454 GLTGSLFREFAFTLAGAVTISGVVALTLSPVMSAKF 489



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 83/233 (35%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS +       +  D   +       F+        +S+   + +      I   +P 
Sbjct: 254 VRLSDIADVSLGAEDYDAEVRFSGQTAVFMGIWPLPNANSLDVIKRVRTEMAAIQRDLPS 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                            IR+ +  +  + + +++ I++       +L  +  + + +   
Sbjct: 314 GLQARVAYDATDYIDNAIREVLKTLSETLLIVIVVIFLFLGSLRSSLVPVVAIPVSLIGA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +     FG   NL  + A++  +G  V+D +VV + +    +      S  +       E
Sbjct: 374 VFLMQAFGFTVNLLTLLAIVLSVGLVVDDAIVVVENV---ERHMREGQSPLEAAFLGARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +G  +  ++      LP+ + G   GS+   FA  +A  + ++   ++ ++ 
Sbjct: 431 LVGPIIAMTITLAAVYLPIGLQGGLTGSLFREFAFTLAGAVTISGVVALTLSP 483



 Score = 51.2 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 61/184 (33%), Gaps = 23/184 (12%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKW----------YFALGAITTLILDIT------KTLGF 710
             K +    ++ + + + +  +F               L     LI               
Sbjct: 842  NKFLPAFALAIVLIFLVLAAQFNSFRDPFVILAGSVPLAIFGALIFTFLKMPDPNVAFWT 901

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                    N+ +   ++TL+G    + +++ +      +L    +S  D + ++    L 
Sbjct: 902  HGWT-TTLNIYSQVGLVTLVGLVSKNGILIVEFAN---QLQLQGLSKHDAVRQAAMTRLR 957

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T+ A      P+ +    G +   S  + +  G+ V    ++F+   I + +    
Sbjct: 958  PIMMTTAATIAGHFPLTLVSGAGAAARNSIGLVLVGGMFVGTLFTLFVVPSIYMLVARDH 1017

Query: 828  AKNA 831
            +++ 
Sbjct: 1018 SRDR 1021


>gi|330827719|ref|YP_004390671.1| RND multidrug efflux transporter [Aeromonas veronii B565]
 gi|328802855|gb|AEB48054.1| RND multidrug efflux transporter [Aeromonas veronii B565]
          Length = 1026

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/609 (11%), Positives = 177/609 (29%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + L  +I  +G          +  +  +P                         
Sbjct: 9   KRPVLAISLSFLIALLGFQAIF-----KMQVREYPEVTNTVIT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +          S +   + IT     +         +   +  
Sbjct: 55  SSDLIQGFITQPLEQAVAQADNIDFMTSSSQLGSSTITAYMKLNTDPNAALSDILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   + ++T    +++       ++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPSVTSSTGSTTAVLYLGFTSPELNSS--QITDYLERVIKPQLFTVGGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++     T + +       N           F   +   + 
Sbjct: 173 KVDLYGGVEFALRVWLDPAKMAAFNLTASDVMTVLNSNNYQSATGQATGYFTLFNGNAET 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+D  E+                      +       +         +    +  +   
Sbjct: 233 QVKDVDELK--------------------RLVVATRDGKVIRLSDIAKVTLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +          L   L           V   +  A   S   
Sbjct: 273 SANGREAVVMAVNAAPTANPINIAHDVLALLPSLERNMPSTMRLNVMYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I  + ++ + G ++ L ++  +V
Sbjct: 333 VIKTILEAAAIVLVVITLFLGSFRAVIIPIITIPLSLIGVVMMMDMFGFSINLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +  F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGEEPFRAAIIGTREIAVPVIAMTVTLAAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ +S   A+++   M   +        K   ++          
Sbjct: 453 GITGSLFKEFALTLAGAVFVSGIIALTLSPMMCSKMLKANEQPGKFESTVHHLLERMTDR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     +     V   I+F+   +   F        + KG + +   A    +L  
Sbjct: 513 YDSMLHAVMKKRPVIVVFAVIVFASLPLLFKFIPSELAPSEDKGVMAVLGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           + + +  + 
Sbjct: 573 IENTMADVN 581



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 86/257 (33%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     + + LS +                   E   +        + +     +  + 
Sbjct: 244 VVATRDGKVIRLSDIAKVTLEKSHDIYRASANGREAVVMAVNAAPTANPINIAHDVLALL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
             +   +P +   N          E I + I  ++ +A  +L+ I +    +   +  I 
Sbjct: 304 PSLERNMPSTMRLNVMYDSTVAINESIHEVIKTILEAAAIVLVVITLFLGSFRAVIIPII 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +   +    +FG   NL  + A++  IG  V+D +VV + +    +         
Sbjct: 364 TIPLSLIGVVMMMDMFGFSINLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGEEPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVIAMTVTLAAVYAPIALMGGITGSLFKEFALTLAGAVFVSGIIALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +     +  +
Sbjct: 481 SPMMCSKMLKANEQPGK 497



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 67/177 (37%), Gaps = 7/177 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
               + +G           +     ++   + + + I+F+     L  + ++ L I+  L 
Sbjct: 830  YRYDFMGEARQFVTEGNALYATFALALAIIFLVLAIQFESVRDPLVIMVSVPLAISGALI 889

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++        ++  + + ++    L
Sbjct: 890  ALAWGMATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLLRGMNRMEAVMQAAKVRL 947

Query: 770  GRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               + T+ A    ++P+    G+      S  I +  G+ +    ++F+   I  ++
Sbjct: 948  RPILMTTAAMIAGLIPLLYAAGAGAAQRFSIGIVIVAGLAIGTLFTLFVLPVIYTYL 1004


>gi|83646250|ref|YP_434685.1| cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
 gi|83634293|gb|ABC30260.1| Cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
          Length = 1047

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/535 (12%), Positives = 149/535 (27%), Gaps = 38/535 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   G+            + ++P +   +                   
Sbjct: 10  RRPVLALVVNIVIIIAGV-----QAWNSLSVRQYPQSENASVT---------VATTYVGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+    +   +                + +T     +         +T  +  
Sbjct: 56  SADVVRGFVTTAIERAIASADGVDYIESKSMLGLSLVTARLKLNYDPTKALADITAKVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    +   +   +           +         E +  ++R    ++       
Sbjct: 116 VRNELPAGSELPAISVQSADSEFAAAY-LSFWSESLSQSEITDYLVRVVQPRLAALSGVQ 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P  +  L  +  ++     + N           F         
Sbjct: 175 RADIFGARTFAMRIWLKPDHMAALNISPTQVRDALAVNNYLAPVGSTKGSF--------- 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                           TAN D  T +   ++   +            ++           
Sbjct: 226 -----------VQTYLTANTDLHTVEQFQELVIRQENDTIIRLQDIADVELGAEEYDTEV 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    +E        ++    P     +          +   
Sbjct: 275 SFNGQTAVFMGIFPLPSANTIEVVERVRKDLEAIKEDLPPGLQGGIGYDASEYINNAIHE 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             GT      +V++V+F+ +   +  LV   +I +++I  + L+ + G TL L ++  IV
Sbjct: 335 VVGTLTDTLLIVVVVIFLFLGSFRSVLVPIVAIPVSLIGAIFLMQMFGFTLNLLTLLAIV 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +    R+ +S   +  +G       +    IT       +   G
Sbjct: 395 LSVGLVVDDAIVVVENVERHLREGRSPVEAARIGARELIGPVIAMTITLAAVYTPIGLQG 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              G   R FA+T+  ++ IS   A+++   M   ++R  + +            
Sbjct: 455 GLTGALFREFALTLAGAVTISGIVALTLSPMMSAKLLRSAESEEKGFTGWVNHRF 509



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 90/258 (34%), Gaps = 12/258 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+      +  ++   +     +             V +   P  S     V+E V+K +
Sbjct: 246 VIRQENDTIIRLQDIADVELGAEEYDTEVSFNGQTAVFMGIFPLPSANTIEVVERVRKDL 305

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA---IAMLIYIWIRF--KWYFALGAI 697
             I           +G   S  +    I  V+ +    + +++ +   F   +   L  I
Sbjct: 306 EAIKEDLPPGLQGGIGYDASEYI-NNAIHEVVGTLTDTLLIVVVVIFLFLGSFRSVLVPI 364

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + + +   +    +FG   NL  + A++  +G  V+D +VV + +    +      S 
Sbjct: 365 VAIPVSLIGAIFLMQMFGFTLNLLTLLAIVLSVGLVVDDAIVVVENV---ERHLREGRSP 421

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
            +       E +G  +  ++       P+ + G   G++   FA+ +A  + ++   ++ 
Sbjct: 422 VEAARIGARELIGPVIAMTITLAAVYTPIGLQGGLTGALFREFALTLAGAVTISGIVALT 481

Query: 815 IAAPILLFIYDWRAKNAR 832
           ++  +   +        +
Sbjct: 482 LSPMMSAKLLRSAESEEK 499



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 73/220 (33%), Gaps = 28/220 (12%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF 688
            T  L+   K + +           I     SR+L  +G   +  + ++ + + + + ++F
Sbjct: 815  TAQLDEGLKALEKAAEEILPPGYTINYTGESRQLRTEGGKFLPALGLAILMIFLVLSVQF 874

Query: 689  -KWYFALGAITTLILDITKTLGFFALF--------------GIEFNLTAVA--AVLTLIG 731
              +      +  L        G                   G    +   A   ++TL+G
Sbjct: 875  NSFRDPF--VILLGSAPLAMFGALLFTTLKMPDPNMPYWTNGWTTTMNIYAQVGLVTLVG 932

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                + +++ +      KL    +   + + ++    L   + TS+A      P+ +   
Sbjct: 933  LISKNGILIVEFAN---KLQMQGMDKLNAVHQAAMTRLRPVLMTSVATVAGHFPLTLVEG 989

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             G +   S  + +  G+ +    ++F+   + + +     
Sbjct: 990  PGAAARNSIGLVLVGGMAIGTLFTLFVTPALYVLLARQHK 1029


>gi|86749873|ref|YP_486369.1| acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
 gi|86572901|gb|ABD07458.1| Acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
          Length = 1042

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/585 (11%), Positives = 162/585 (27%), Gaps = 40/585 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ + I   G+            +   P       I++   L G S   +   
Sbjct: 9   RRPVLTTLITASIIAFGIF-----GYRLLPVSALPKVDFPT-IAVTATLPGASADTMAAS 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   L        S +        +  Q  + IT+ F   R  +  A  V   L  
Sbjct: 63  VAGIIERQL--------STIAGISSMSSNSSQGTSVITIQFDLGRNIDAAALDVQTALTI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKE-ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L ++                ++    +   +   A+  +          +      
Sbjct: 115 AQRRLPIEMTTPPSFRKVNPAEFPVLFVALSSPTLPLSAV--NEYGDITIGQALSQIPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  + DP        +   +       N+S             +    
Sbjct: 173 AQVTIYGAQKFAIRVQADPEAAAARGLSLEDIRIAVARANSSTPVGTMSGPKQDFALQAS 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++  V+                       I                 +   +      
Sbjct: 233 GQMDKAVD--------------------YRHIVVAWRNGSPVKLDEVARVYDSVENDRLA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    ++        LRA   P     V      +   +  
Sbjct: 273 TWFNGERSIVLAIQKQPDANTVAVVDGVRAKLPSLRAQIPPSVAMTVMMDRSVSVRQAVF 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T AI   LV++V+F+ +       +   ++ ++++ T A++ +L  ++   ++  +
Sbjct: 333 DVQETLAIAVVLVVLVIFLFLRKASATFIPALAVPISLLGTFAVMYMLDFSINNMTLLAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I++ E I     +    F +   G      TI     + +   + +   
Sbjct: 393 TLSVGFVVDDAIVMLENIMRHVEQGMRPFDAALKGAREIGFTIISITFSLIAVFIPVLLM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R F++T+ ++IL+S F ++++   +   +++       +   L  F  +   
Sbjct: 453 GGIVGRVFREFSVTIAVAILVSGFVSLTLTPMLCARMLKAHDPHKKENIVLRGFETMFSR 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
               +  A    +    L  + +   L      Y +  KG     
Sbjct: 513 WLRGYEWALDRVLAHKFLMLMVTFATLGGTIYLYMVVPKGFFPQE 557



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 88/242 (36%), Gaps = 6/242 (2%)

Query: 594  VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            + +  + +        N  G++  +               V  + + +    +P++ +  
Sbjct: 783  IDAVAKMVPTVGPLQINHQGQQPAVTISFNLAEGQSLGAAVDRITQIEQESNLPVTIVTG 842

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
                       L  +G++ +     A +I   +   +   +  I+ L       +    L
Sbjct: 843  FSGTAQVFQESLRGQGVLILAAVFAAFVILGILYESFIHPITIISGLPSAGIGAILTLML 902

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            F +E ++ A+  ++ L+G    + +++ D   +  ++    +S    I ++        +
Sbjct: 903  FDMELSVIAMIGIVMLVGIVKKNAIMMVDFALERRRV---GLSAEHAIREAALLRFRPIM 959

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+ AA    LP+A+    G  +     + +  G+ V+   ++FI   I +++     K 
Sbjct: 960  MTTFAAIFGTLPIALGTGAGAELRQPLGVAVVGGLCVSQLLTLFITPVIYIYLDKIDRKL 1019

Query: 831  AR 832
             R
Sbjct: 1020 KR 1021



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 52/142 (36%), Gaps = 6/142 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
                 + + +  T     +     N   + A+   +G+ V+D +V+ + +   M+    
Sbjct: 360 FIPALAVPISLLGTFAVMYMLDFSINNMTLLALTLSVGFVVDDAIVMLENI---MRHVEQ 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
            +   D   K   E     +  + +     +P+ + G   G V   F++ +A  I+V+  
Sbjct: 417 GMRPFDAALKGAREIGFTIISITFSLIAVFIPVLLMGGIVGRVFREFSVTIAVAILVSGF 476

Query: 811 SSIFIAAPILLFIYDWRAKNAR 832
            S+ +   +   +      + +
Sbjct: 477 VSLTLTPMLCARMLKAHDPHKK 498


>gi|255327191|ref|ZP_05368266.1| protein-export membrane protein SecD [Rothia mucilaginosa ATCC
           25296]
 gi|255295809|gb|EET75151.1| protein-export membrane protein SecD [Rothia mucilaginosa ATCC
           25296]
          Length = 563

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 105/524 (20%), Positives = 191/524 (36%), Gaps = 50/524 (9%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-----D 63
           +L  ++   G+  +  +              P     L LDL GG+ ++L         +
Sbjct: 18  VLLMVVMAAGIFGSTYSGGS---------WAP----KLALDLSGGTQMILSPKVNGSSDE 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120
           +     L    + +R  +   G+    +       N + +S   +   E           
Sbjct: 65  NVSQEQLNQAVEIIRQRVDGAGVSEAEVTTSFGSGNNVVVSVPGTISAE----------- 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      + L+  +       VL       V   A     ++ +   +    S+  
Sbjct: 114 ----------TRQLIQASANMTFRPVLLSGAGTAVAEDARTADDKLPKPSAEPTDGSDRN 163

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                 ++           +  R     +A  +   V  +   +                
Sbjct: 164 WITADLYKQYEAKDC----TAARNEDADSADPTKPMVACSTDGQEKYILGPVELSGSDIS 219

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                +         G  A                            ++     A++LDG
Sbjct: 220 TASHSQETTGQGVTTGRWAVNIQFNDAAREKFQNITSRLNAIRAQNANDPRARFAILLDG 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VL++PV    I  GK QI+GNFT + A  LA  L+ G+LPI   I  E+ + A LGS+ 
Sbjct: 280 KVLSSPVSQAVISDGKPQITGNFTEQEAKALADQLKYGALPISFTIQSEQQISATLGSEQ 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT----LPS 416
           +  G    + GL+L+ ++ +  Y   G V   S+ +  I++   ++LLG  L     L  
Sbjct: 340 LRVGLLTGLIGLLLVFVYSLFQYRLLGFVTMMSLIVAGIISYEAIALLGWALNYRLSLAG 399

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +AG+++ IG   DS I+  ERIR+E R  +++  +++ G+ RA  TI  S    L+A VV
Sbjct: 400 VAGLIVAIGATADSFIVYFERIRDEIRAGRTIPSAVNHGWQRASRTILASKAVNLLAAVV 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           L+    G+V+GFA T+GL+ +  +         M+  +   +  
Sbjct: 460 LYVVSVGSVKGFAFTLGLTAIADLVVVYLFTHPMLTLLANTRYF 503



 Score = 89.0 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 77/210 (36%), Gaps = 8/210 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G+   Q       + K   +    TIQ+ + +   +  E +R G++  +I  + + 
Sbjct: 296 PQITGNFTEQEAKALADQLKYGALPISFTIQSEQQISATLGSEQLRVGLLTGLIGLLLVF 355

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN----LTAVAAVLTLIGYSVNDK 737
           +Y   +++       + +LI+    +    AL G   N    L  VA ++  IG + +  
Sbjct: 356 VYSLFQYRLL-GFVTMMSLIVAGIISYEAIALLGWALNYRLSLAGVAGLIVAIGATADSF 414

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +V ++R+R  ++      +    ++          + +     ++ + + V     +  F
Sbjct: 415 IVYFERIRDEIRA---GRTIPSAVNHGWQRASRTILASKAVNLLAAVVLYVVSVGSVKGF 471

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           A  +    +           P+L  + + R
Sbjct: 472 AFTLGLTAIADLVVVYLFTHPMLTLLANTR 501


>gi|213616002|ref|ZP_03371828.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 153

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 83/134 (61%), Gaps = 1/134 (0%)

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
           G +  L  D+  TLG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +     
Sbjct: 2   GVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRG 61

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
             + ++ + S+ +TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI+
Sbjct: 62  TPY-EIFNVSLTQTLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIY 120

Query: 815 IAAPILLFIYDWRA 828
           +A+ + L +   R 
Sbjct: 121 VASALALKLGMKRE 134


>gi|332829647|gb|EGK02293.1| hypothetical protein HMPREF9455_01563 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1055

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/650 (12%), Positives = 179/650 (27%), Gaps = 41/650 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS----DELRSFLKKEG 85
             ++++P   P               + +E       +  +        +E  + ++   
Sbjct: 30  LPIEQYPDIAPPT-------------VQVEASYSGANSDVIMNSVIIPLEEAINGVEGMT 76

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               S       IT+ F      +     V   +   +S L  +  +  +    ++  +I
Sbjct: 77  YMTSSAETGSASITVYFKQGTDPDMATVNVQNLVNQASSILPAEVTQTGVTVRKQQTSNI 136

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++     D     A           I QI                  +     P  +   
Sbjct: 137 LMMSFVSDNPDYDAKFLQNYANINIIPQIKRVYGVGNASVFGANDYSMRIWLKPDVMASY 196

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +T ++       N        G      +   QY ++    +S               
Sbjct: 197 KISTDEVIGALKDQNIEAAPGQLGE---NSNQAFQYTLKYTGRLSSTEEFE--------- 244

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                +I       +         +     +                 S  A  +    I
Sbjct: 245 -----NIIVRSSEGKIVRLSDVAKVELGSLMYSVTTSTDGNAAIMMAISQTAGSNAQEVI 299

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +         +    P                S S    T      LV +V+F+ +   +
Sbjct: 300 KNVKAELDKAQNDLPPGLKITYLMDVSDFLNASISKVITTLLEAFLLVFLVVFVFLQDFR 359

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ + ++ T   L ++G ++ L ++  +VL IG+ VD  I+V E +  E    
Sbjct: 360 STLIPAIAVPVAIVGTFFFLWIMGFSINLLTLFALVLAIGIVVDDAIVVVEAVHAELESG 419

Query: 446 --QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG--AVRGFAITMGLSILISMF 501
                  ++      A + I  + + + +   V F  G      + F +T+ ++I IS  
Sbjct: 420 EKDPKKAAIKAMGEIAPAIISITLVMSSVFIPVSFIGGTSGIFYKQFGLTLAVAIFISAI 479

Query: 502 TAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
            A+++  A+             K   I     FF I         +     +G      I
Sbjct: 480 NALTLSPALCALFLKPHDEDHKKKNFIQRFYYFFNIGFNATTSKYKKSLIFLGKKGHRWI 539

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
               +L +  + +G+            +    + ++     S      S           
Sbjct: 540 TVSIILVSSVILFGLMKVIPTGFVPQEDSGAVMGMITLPPGSSLERTDSIVQIVNGMANE 599

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
           +      G     + +  M     + I+ +    + +I   +++  +  K
Sbjct: 600 IPEVKNIGSLSGVSFMSGMGSSYGSVIIKMDHWDDRKITANEVAAIMTEK 649



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 63/175 (36%), Gaps = 13/175 (7%)

Query: 668  KGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNL 720
                 +I     + +Y+    +   +   L  I +L + +     F + FG    I  N+
Sbjct: 867  SSQTVLIFGLCLIFVYLLLAALYESYILPLAVIFSLPVGLAGVFIFLSAFGLSQGITNNI 926

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                +++ LIG    + +++ +     ++     +S  D             + TS A  
Sbjct: 927  YVQISLIMLIGLLAKNAILIVE---YAIQRRQQGMSIIDAAVNGAVARFRPILMTSFAFI 983

Query: 781  ISVLPMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +LP+A+  G   I   S  I    G+++     + I   + +     + K ++
Sbjct: 984  FGLLPLAISSGAGAIGNRSIGISAIGGMLIGTLIGVLIIPSLYIIFQSIQDKVSK 1038



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L     + + I  T  F  + G   NL  + A++  IG  V+D +VV + +   +
Sbjct: 357 DFRSTLIPAIAVPVAIVGTFFFLWIMGFSINLLTLFALVLAIGIVVDDAIVVVEAVHAEL 416

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGI 805
           +        +    K++ E     +  ++      +P+  + G S I    F + +A  I
Sbjct: 417 ESGEK--DPKKAAIKAMGEIAPAIISITLVMSSVFIPVSFIGGTSGIFYKQFGLTLAVAI 474

Query: 806 VVAASSSIFIAAPI-LLFIYDWRAKNAR 832
            ++A +++ ++  +  LF+      + +
Sbjct: 475 FISAINALTLSPALCALFLKPHDEDHKK 502


>gi|225620305|ref|YP_002721562.1| preprotein translocase [Brachyspira hyodysenteriae WA1]
 gi|189031321|gb|ACD74831.1| putative protein-export membrane protein [Brachyspira
           hyodysenteriae WA1]
 gi|225215124|gb|ACN83858.1| preprotein translocase [Brachyspira hyodysenteriae WA1]
          Length = 307

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/296 (26%), Positives = 156/296 (52%), Gaps = 11/296 (3%)

Query: 539 AIQFMRARFWGVGISILFSICSIC----LLFTHGLNYGIDFKGGIQ--LGVLANRPVDLS 592
            I F++       +S +  I SI      L T+  N GIDF GG++  + +     ++++
Sbjct: 16  KIPFVKIMPIAAVVSSILFIASIALFVNKLTTNSFNMGIDFAGGVELKVQIDNPEVINIA 75

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +R+   +     ++ Q  +G  N    L    G +    R ++++  K T+      + 
Sbjct: 76  EIRALYNNFGTETVNIQELEGADNVNAFLLRFRGSNEESDRAMQVLYDKYTQ--EKVNLI 133

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + I+   +S + ++   + +I+S I ++IYI IRF + +A  AI TLI ++    G   
Sbjct: 134 GSNIISGVVSADNLKLAFILIIVSWIIIMIYITIRFNYRYAFPAIITLIHNVVIVFGILL 193

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
               EF++  ++++LTLIGY++ND +VV+DR+R+N     +   F+++++ S+N  +GR+
Sbjct: 194 FLNKEFSVLVLSSMLTLIGYTINDIIVVFDRIRENA---NSKKPFKEIVNISLNNVVGRT 250

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + TS++  ++ L + +WGG ++  FA     G+V+   +S FIA+ +L+     + 
Sbjct: 251 IITSISTLLAALAIMIWGGFILYDFAFTFFCGVVIGTYASNFIASGLLILFMKTKK 306


>gi|82703091|ref|YP_412657.1| acriflavin resistance protein [Nitrosospira multiformis ATCC 25196]
 gi|82411156|gb|ABB75265.1| Acriflavin resistance protein [Nitrosospira multiformis ATCC 25196]
          Length = 1029

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/642 (12%), Positives = 170/642 (26%), Gaps = 37/642 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L +     G++           +   PS                   VL   
Sbjct: 9   RRPIMTVLLSASAILAGIMA-----YGNLPIAALPSYDSPTI---------SVAAVLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +    +   +       ITL F   R  ++ A  V   L  
Sbjct: 55  SPETMASSVATPLERQFSTISGLSVISSTSTLGNTAITLEFDQKRDIDSAAIDVQAALLR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L ++              S +L    +        E +          +       
Sbjct: 115 AERALPIEMTSPPSYRKINPADSPILF-LTLTSPSMSLSELNSLAEDLIAPTLSTLSGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   + +    +    +   L     T   ++      N +             +     
Sbjct: 174 QVQINGQKKYAVRIHVNAEALAVRNLTLDDIATALGTANANTPIGTLEGPRQTLTIQANR 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + +                          I                 +   +  V    
Sbjct: 234 QLGNAAA-------------------FADLIVATSDAGNPVRLSEVAEVEDSVQSVKTAS 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L A         +      +   S   
Sbjct: 275 WANGERAITLSVQRQPGANTVATVDAIKAALPALVAQMPSSVQLKLTSDRSVSIRDSIHD 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A+   LVL+V+F+ +      L+   S+ ++++ T+A++ LL  +L   S+  I 
Sbjct: 335 VQVTLAVTIVLVLLVIFLFLRKASATLIPALSLPISLLGTVAMMYLLDYSLDNISLLAIT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +      +  +G      TI   +++ +   + +FF  
Sbjct: 395 LAVGLVVDDAIVMLENIVRHIEEGMPPLQAALVGSKEVSFTIMSISLSLVAVFIPIFFMP 454

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FA  +G++I++S   ++++V  M    I   + +   +   + F       
Sbjct: 455 GVIGLLFHEFAGVVGIAIMMSALVSLTLVPVMTSRYIVQHESEGRSLKWTAWFERGFIRT 514

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              + R     +         ++         + +  KG      +    + +  V    
Sbjct: 515 LGVYERFLDLALLHRRTVLGIAMGTFIATAGLFVVLPKGFFPTEDIGQALITVDAVEDIS 574

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                  +         N  V             R+   +K 
Sbjct: 575 FPAMTELLQQTGEIMRANPAVDTLIVNATESNSARLFMTLKP 616



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 94/238 (39%), Gaps = 6/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ S++            +   + + +      A       ++K   E+   ++I  + 
Sbjct: 779  SSVASVERQVGPLAINHSGQLESLTISFNLAPGAALGEASVRIEKFKRELNVPASILTSY 838

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                   +      ++ +I + + + + + + ++ +   +  ++ L       LG   LF
Sbjct: 839  AGDAAAFQSSQASQVILIIGALLVIYVLLGVLYESYIHPVTILSGLPSAAVGALGMLWLF 898

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             +E ++ A+  +L LIG    + +++ D            ++ ++ I  +        + 
Sbjct: 899  NMELSIIAMIGILMLIGIVKKNAIMMIDFALD--AQRNEGMTPQEAIRTACLLRFRPIMM 956

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T++AA +  LP+A+    G  +     + +  G++ +   ++FI   I L++  +  K
Sbjct: 957  TTLAALMGALPIALGLGAGAELRQPLGLAVVGGLLFSQVITLFITPVIYLYLDRYSGK 1014



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 47/127 (37%), Gaps = 6/127 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    +L + +  T+    L     +  ++ A+   +G  V+D +V+ + +   ++    
Sbjct: 361 LIPALSLPISLLGTVAMMYLLDYSLDNISLLAITLAVGLVVDDAIVMLENI---VRHIEE 417

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +           E     +  S++     +P+    G +      FA  +   I+++A 
Sbjct: 418 GMPPLQAALVGSKEVSFTIMSISLSLVAVFIPIFFMPGVIGLLFHEFAGVVGIAIMMSAL 477

Query: 811 SSIFIAA 817
            S+ +  
Sbjct: 478 VSLTLVP 484


>gi|311106119|ref|YP_003978972.1| multidrug resistance protein [Achromobacter xylosoxidans A8]
 gi|310760808|gb|ADP16257.1| multidrug resistance protein MdtC 2 [Achromobacter xylosoxidans A8]
          Length = 1031

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/517 (12%), Positives = 136/517 (26%), Gaps = 38/517 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      + L   +  +G +           +   P                     L  
Sbjct: 6   LHRPTACIFLAIALTLLGAVA-----WRLLPVAPLPQVDFPTI---------EVRAELPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    +     +        S  Q   ++ L F   R     A  V   + 
Sbjct: 52  ASPESMASTVAAPLERALGSIAGVSSMSSSSNQGATRVQLQFDLDRDINEAARDVQAAIN 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L      N          + ++    +      A E           +I      
Sbjct: 112 AARAELPSGMPGNPSYRKVNPSQAPIM-ALALSSSTRPAGELYDLGSTVLAQKISQINGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +       L  +  + + + L        ++          +          R   G  
Sbjct: 171 GEVTMGGSSLPAVRVQVNSNALAHYGVALDEVRQAIADAAPMRPQGQLDSASQRWEVGTP 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                 P+  +    +                 +   +      
Sbjct: 231 E--------------------QPRAARDYESLIVRHQDGAVIRLSQIARVSDSVENRYSS 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        S +   +   TI         LRA         V          +  
Sbjct: 271 GFHNRNPAVVLTISRQPGSNIIETIGAINQALPGLRALMPADVDLTVALDRSPGINATLR 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T A+   LV++V++  +   +   +   +I + +I T A++ L G +L   S+  +
Sbjct: 331 EAHITLALATALVILVVWAFLGNARAAAIPSVAIPVCLIATFAVMYLWGFSLNNLSLMAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++  GL VD  I+V E I     +  S   +   G      T+    +   +  V + F 
Sbjct: 391 IVAAGLVVDDAIVVLENISRHIERGLSPRKAALRGVREVGFTLVAMTVALSVVFVSILFM 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG      R F+IT+  + +IS+  +++I+ ++    
Sbjct: 451 GGLVERLFREFSITLVAATVISLVVSVAIIPSLCARW 487



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 83/241 (34%), Gaps = 7/241 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + LS +    +S++    S  +       L   +    + +     +      +  ++P 
Sbjct: 252 IRLSQIARVSDSVENRYSSGFHNRNPAVVLTISRQPGSNIIETIGAINQALPGLRALMPA 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKT 707
                  +         +R+  + + ++   +++ +W        A      + + +  T
Sbjct: 312 DVDLTVALDRSPGINATLREAHITLALATALVILVVWAFLGNARAAAIPSVAIPVCLIAT 371

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L+G   N  ++ A++   G  V+D +VV + +    +     +S R    + + E
Sbjct: 372 FAVMYLWGFSLNNLSLMALIVAAGLVVDDAIVVLENI---SRHIERGLSPRKAALRGVRE 428

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V  ++A  +  + +   GG V      F+I +    V++   S+ I   +     
Sbjct: 429 VGFTLVAMTVALSVVFVSILFMGGLVERLFREFSITLVAATVISLVVSVAIIPSLCARWL 488

Query: 825 D 825
            
Sbjct: 489 K 489



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 82/204 (40%), Gaps = 6/204 (2%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             + L  +   + +++  S IQ       +  ++ ++     ++   +A+ + + I ++  
Sbjct: 818  EQALVAIDAAMAKLMVPSYIQTRLGGDARNFQQSLQDQPWLILAVLVAIYLVLGILYESP 877

Query: 692  F-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  ++TL       L    L GIEF L A+  +  L+G  + + +++ D        
Sbjct: 878  LHPLTILSTLPSAGVGALLALRLAGIEFTLIALLGLFLLVGIVMKNAILMID--FALSLE 935

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                ++    I ++    L   V T++A  +  LP+ +    G  +     I +  G+++
Sbjct: 936  RREGLTPEQAIHRAAMLRLRPIVMTNLAGLLGALPLVLGMGEGSELRRPLGIAIVGGLLI 995

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            +   +++    + L +   R K  
Sbjct: 996  SQFLTLYTTPIVYLALERLRLKWK 1019


>gi|217979663|ref|YP_002363810.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocella silvestris BL2]
 gi|217505039|gb|ACK52448.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Methylocella silvestris BL2]
          Length = 1047

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/659 (10%), Positives = 185/659 (28%), Gaps = 41/659 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ-MYSDELRSFLKKEGI- 86
           +  L +FP  +P               + +           ++   +  L + +      
Sbjct: 30  RIPLSQFPDIVPP-------------QVQVTASYPGASAEVVEASVAQPLEAQMVGVDKA 76

Query: 87  GVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
                    +    +T+SF      +     V   +Q   ++L        L        
Sbjct: 77  IYMKSSSGNDGSYNLTVSFELGTNPDIATVNVNNRVQTALAQLPETVTHQGLTVQKRSSA 136

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +       +      +  +       +D++  +    Q +   ++   +    D  RL 
Sbjct: 137 ILQFMMLYSENGAQDPLFITNFATINVLDELARTPGVGQAMLFGKLKYSMRIWFDVERLI 196

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            L    + +       N        G R +      Q  ++ +  ++             
Sbjct: 197 SLNLAPSDVIAAVQSQNTQAAIGRIGARPIESDQQFQINLQTQGRLT------------- 243

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +    +                 +      + +   L+               +   
Sbjct: 244 TPEQFGNIVIRANPNGSLVRVKDVATVQLGAQNMDNESRLSGKPAVAIGIYLSPGANAVQ 303

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T          L+          V   +      +      T      LV+ V+F+ +  
Sbjct: 304 TAAAVQAKLDKLQLRFPEGLKTKVVYDSTTFVSDTIHEVLKTLIEAFVLVVFVVFVFLGS 363

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  ++   ++ +++I T A+L  +G +    S+  +VL IG+ VD  I+V E +     
Sbjct: 364 MRATIIPAIAVPVSLIGTFAVLLAVGFSANTVSLLALVLAIGIVVDDAIVVVENVERVME 423

Query: 444 KNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILI 498
           +    S   +     ++  + I    +  L   V + F    +    R FA+T+ +++LI
Sbjct: 424 EEPELSPADATKKAMAQITAPIIAITLVLLSVFVPVAFIPSVSGQLFRQFAVTISVAMLI 483

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINP-----LSRFFLIPDCIAIQFMRARFWGVGIS 553
           S   A+++  A+   ++R  + K   ++                ++    RA    + + 
Sbjct: 484 SAVNALTLSPALCAIVLRPGRHKGRIMSRVLGAIDKTRDGYAHIVSHIVRRALVSILLVL 543

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           ++ +      L T       + +G     V       +      ++ ++   +     D 
Sbjct: 544 VVGAAIYGLSLKTPVGFLPEEDQGVFFTVVQLPDGASVDRTSEAMKKVEKIALDMPQVDA 603

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             + +               ++  +K          + Q         +  +    ++ 
Sbjct: 604 TFSIIGYSFLDGVSQSNAGFIVVKLKPFAARPTEADSAQALIRKITVEAAAIRTASVIA 662



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/277 (9%), Positives = 85/277 (30%), Gaps = 6/277 (2%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                       +            +      +  V  ++L +++                
Sbjct: 761  YGRTWQVNLQADEQDRRDYSSIWQIYIRNKSNTMVPMASLAAMRTIVGPQVISRYNNYRA 820

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V +   P   V+    L  +     + +P            + ++   + G +  +    
Sbjct: 821  VTINGTPAPGVSSGAALAAMTALSAKTLPPGYSFEWTGTAYQEAQASGQTGTILALALLF 880

Query: 679  AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            A L  + +   W   +  + ++ + +        +  +  +L A   ++ LI  +  + +
Sbjct: 881  AFLFLVALYESWVIPVPVLMSVSVAVLGAFAGVLIAQLSLDLYAQIGLVVLIALAAKNGI 940

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIG 795
            ++ +  ++        +  R+             + TS+A  + ++P+    G+      
Sbjct: 941  LIVEFAKEQR---EQGMDIREAAILGARMRFRAVMMTSIAFVLGLVPLVFAHGAAQVSRR 997

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                P+  G++ A++  IF+   + +     R    +
Sbjct: 998  GVGTPVFSGMIAASALGIFLIPMLYVVFETAREWKWK 1034



 Score = 44.3 bits (102), Expect = 0.095,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 59/151 (39%), Gaps = 10/151 (6%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
                +     + + +  T       G   N  ++ A++  IG  V+D +VV    +R+ 
Sbjct: 363 SMRATIIPAIAVPVSLIGTFAVLLAVGFSANTVSLLALVLAIGIVVDDAIVVVENVERVM 422

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
           +        +S  D   K++ +     +  ++      +P+A      G +   FA+ ++
Sbjct: 423 EE----EPELSPADATKKAMAQITAPIIAITLVLLSVFVPVAFIPSVSGQLFRQFAVTIS 478

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++++A +++ ++  +   +        RI
Sbjct: 479 VAMLISAVNALTLSPALCAIVLRPGRHKGRI 509


>gi|261343734|ref|ZP_05971379.1| RND transporter, hydrophobe/amphiphile efflux-1 family [Providencia
           rustigianii DSM 4541]
 gi|282568117|gb|EFB73652.1| RND transporter, hydrophobe/amphiphile efflux-1 family [Providencia
           rustigianii DSM 4541]
          Length = 1028

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/658 (10%), Positives = 184/658 (27%), Gaps = 40/658 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++++  +   G+       +  + +  FP                   +  +   
Sbjct: 12  RPIPTIVIFLALTIAGIFSFNQLSVTANPVINFPIVT--------------VTITQDGSS 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +   S +        ++ +  +   + F  +       + +   +  +
Sbjct: 58  PTEMENAITKPVERAVSGIPGIRHISSTITEGISTTAIEFDLNIDAYIATNDIREQIAQI 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L     + L+     +  +I+    + D       + S  +      Q+ ++    +
Sbjct: 118 RSDLPQTIDEPLINRIDIEGGAILRYAISSD--TQSIADLSWFVDDTISKQLIMTPGVQK 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  E D ++L  L  +   ++      + +  G       L+ +      
Sbjct: 176 VSRLGGADSVIRVEPDANKLASLQLSIVGINELLRSVHQNSAGGSSKYNSLQHTIRILGE 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   +I  I L                         R         I +          
Sbjct: 236 KKSVDDIKNIQLPI--------------------GDQRWIKLDDIATIYQGQKTAKTISQ 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L    +           S     +        LR     +    +    V     S  + 
Sbjct: 276 LNNEDVVGFAVFRAKNSSDTEVAKGVEQALEQLRLKHPEMS-IQLVSSTVKYTESSYHLT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    A L +I++F  +   +  L+A  ++ L+++ T  +L++   TL   ++  + L
Sbjct: 335 IQTLLEGAFLTIIIVFFFLKSWRATLIAAVALPLSILPTFFILTIFDYTLNSITLLALTL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+ VD  I+  E I++   + +  + +           I    +T +   + + F GG
Sbjct: 395 VIGILVDDAIVEIENIQKYIERGERPYLAALKASDAIGFAIVAITLTIVAVFLPVSFIGG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              +    F IT+  ++L S+  A  +   M  +++   K  +   +           ++
Sbjct: 455 FIGKYFVPFGITVSAAVLSSLLVARLVTPLMAAYVLLPAKNINHQNSIPKWIKKYTQLLS 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                 +       I        + +              Q+ V       +   +  ++
Sbjct: 515 ATLRHRKLALSLALIFLIGSMSSITYLPVGFMPDGDMSVSQIEVEFPPGTPVEKTQQAIK 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           ++ +                      G +  + +++  +       +     +N+   
Sbjct: 575 NMALKLKDRSEIKSIYTIAGISDDADGIAQHKGQLILTLTAPNERKMSQKQFENSISY 632



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 77/232 (33%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            R + L  + +  +  +      Q  + +       + +        + +E   +++   
Sbjct: 252 QRWIKLDDIATIYQGQKTAKTISQLNNEDVVGFAVFRAKNSSDTEVAKGVEQALEQLRLK 311

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
            P  +IQ                    +  + + ++I  +    W   L A   L L I 
Sbjct: 312 HPEMSIQLVSSTVKYTESSYHLTIQTLLEGAFLTIIIVFFFLKSWRATLIAAVALPLSIL 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     +F    N   + A+  +IG  V+D +V  + ++K ++              +I
Sbjct: 372 PTFFILTIFDYTLNSITLLALTLVIGILVDDAIVEIENIQKYIERGERPYLAALKASDAI 431

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
              +     T +A F+ V  +  + G     F I ++  ++ +   +  +  
Sbjct: 432 GFAIVAITLTIVAVFLPVSFIGGFIGKYFVPFGITVSAAVLSSLLVARLVTP 483



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +I S + +   + I FK +   +  +  L   I   +    L+    +L  +  +L L+G
Sbjct: 850 MIFSILLVFAILVILFKDFIQPITILAALPFSIGGAIIALVLYDAMIDLPVIIGILMLMG 909

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
               + +++ + + +        +     I ++  E +   + T++A    ++P+ V   
Sbjct: 910 IVTKNSILLVEFILE---KERAGLPRDAAIIEAGQERIRPIIMTTLAMIAGMIPL-VLTS 965

Query: 792 SVIGSFAIPMAFGIVVA 808
                F  PMA  ++  
Sbjct: 966 GADSGFRAPMAVAVIGG 982


>gi|325971410|ref|YP_004247601.1| acriflavin resistance protein [Spirochaeta sp. Buddy]
 gi|324026648|gb|ADY13407.1| acriflavin resistance protein [Spirochaeta sp. Buddy]
          Length = 1051

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 62/505 (12%), Positives = 147/505 (29%), Gaps = 26/505 (5%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
             P   ++ FP       I          +        + +   +    +   S +    
Sbjct: 28  VYPNLSVELFPEMDLPMVI---------VYSSYRGASPETMESRVTKLIESAVSNVGGIK 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +  +  + + L FA     +  +  +   +         D  K  +       + I
Sbjct: 79  QVSSTSSEGLSMVMLEFAYGTDLDKASQSINDNISLYTDVFPEDATKPTIFKLNTNMMPI 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +            A E    +      ++           +      +    D +RL   
Sbjct: 139 MNIALRGSNGQ-DANELRAVLEDMVQSRLERVAGVSSTSINGGQDAFVQVAIDQNRLEAY 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T +++++     N            L              EI    +          T
Sbjct: 198 GLTLSQVAYTLNPQNYQIGAGTLIEGDLSYLLRTDAQFSSIEEIEDAMVVSYPKYDAKGT 257

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                       G+          +            +          + ++  +     
Sbjct: 258 II----------GSNVVRLKDVATVSYAYRDATSQVYINGESGVYLSINKESDANSVQVA 307

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +    +   L           V          + +    +      LV++VLF+ +   K
Sbjct: 308 KRVKEVIEDLNKELPKGMSLEVIVDTTEMVESTINTVYESLLYGVVLVMVVLFIFLRSIK 367

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   SI ++++LT+ ++  +G TL L ++ G++LG+G+ VD +I++ E I     + 
Sbjct: 368 STLIIGISIPVSMLLTVLVMFFMGYTLNLMTLTGLILGLGMTVDGSIVILENIFRYRERG 427

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF------FGGGAVRGFAITMGLSILIS 499
             +  +  +G      +I  S +T +   V +          G  +   A T+ +S+L S
Sbjct: 428 AKLHAAAILGTKEMIVSITASILTTVCVFVPMVLLRSNLEMLGEILTPMAATIIISLLAS 487

Query: 500 MFTAISIVRAMMIFIIRYKKMKSID 524
           +  A++++  +    ++    K   
Sbjct: 488 LVVAVTLIPVLTSSYVKLYTRKQKP 512



 Score = 91.7 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 93/254 (36%), Gaps = 10/254 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +       + L  + +   S     I+ +N     + +  L      S A+  +  ++ K
Sbjct: 792  IRNSFGEKISLDNLATIQRSTGPVAINRENEMRTVHVIGGLAPSYAASQAEADIKALLAK 851

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
            ++     +      +         +  +  + ++++ + +   +   F+ +      + +
Sbjct: 852  ELPLTDEVFIEYGGDFADMTA---MFSQVGLILVLAIVLVFGVMASLFESFKNPFIVLLS 908

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + L +   +G + + G  F+L +   ++ L G  VN+ +V+ + +     L    +  R 
Sbjct: 909  MPLMMVGVVGIYLITGETFSLISAIGIVILSGIVVNNGIVLIEYIN---LLRKRGLPIRS 965

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIA 816
               ++    L   + TS+     ++P+A +GG     I      +  G+ ++   +IF  
Sbjct: 966  ACIEAGGNRLKPILMTSLTTIFGMIPLAFFGGQGAEQIQPIGQTIIGGMAISTLMTIFFT 1025

Query: 817  APILLFIYDWRAKN 830
              +       + K 
Sbjct: 1026 PVLYALFNKDKQKK 1039



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 95/262 (36%), Gaps = 13/262 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++ +  V L  V +   + +              +L   +    +SV   + ++ V + 
Sbjct: 257 TIIGSNVVRLKDVATVSYAYRDATSQVYINGESGVYLSINKESDANSVQVAKRVKEVIED 316

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI-TTL 700
           + + +P        +   ++    I      ++   + +++ ++I  +   +   I  ++
Sbjct: 317 LNKELPKGMSLEVIVDTTEMVESTINTVYESLLYGVVLVMVVLFIFLRSIKSTLIIGISI 376

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+      G   NL  +  ++  +G +V+  +V+ + +    +           
Sbjct: 377 PVSMLLTVLVMFFMGYTLNLMTLTGLILGLGMTVDGSIVILENI---FRYRERGAKLHAA 433

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVIGSFAIPMAFGIVVAASSSIFIAAP 818
                 E +     + +      +PM +      ++G    PMA  I+++  +S+ +A  
Sbjct: 434 AILGTKEMIVSITASILTTVCVFVPMVLLRSNLEMLGEILTPMAATIIISLLASLVVAVT 493

Query: 819 IL-------LFIYDWRAKNARI 833
           ++       + +Y  + K  ++
Sbjct: 494 LIPVLTSSYVKLYTRKQKPLKL 515


>gi|320329840|gb|EFW85828.1| RND efflux transporter [Pseudomonas syringae pv. glycinea str. race
           4]
          Length = 1034

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/502 (13%), Positives = 139/502 (27%), Gaps = 41/502 (8%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ----MYSDELRSFLK 82
            P+  +   P A                 + +           +        +   S + 
Sbjct: 33  FPRLPIAPLPEAEFPT-------------IQVTAQLPGASPETMAPSVATPLEVQFSAIP 79

Query: 83  KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                  S       +TL F  ++  +  A +V   +     +L  D             
Sbjct: 80  GMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADMPSLPTWRKVNPA 139

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
            S VL   ++   +    E S         Q+   E   Q   + +    +  +  P +L
Sbjct: 140 DSPVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKL 198

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
             L  T A +                              +          ++  ++N  
Sbjct: 199 AALGLTLADIRLAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQ 238

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    +                 +                         +   +  
Sbjct: 239 LFKPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIV 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T++        L+          V          S    + T  I   LV+ V+ + + 
Sbjct: 299 DTVDRIQRELPRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLR 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
                L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I    
Sbjct: 359 QLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHL 418

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILIS 499
              Q +  +   G      T+   + + + A + L F G   G   + FA+T   +ILIS
Sbjct: 419 EAGQGMREAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILIS 478

Query: 500 MFTAISIVRAMMIFIIRYKKMK 521
           +  ++++   +    +R     
Sbjct: 479 VVVSLTLAPTLAALFMRAPTHN 500



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 78/202 (38%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   ++I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVSMLDQAKKEIGMPASIIGSFQGAAQAFQTSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  ++ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGIVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               +S ++ I +         + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLSPQEAIYEVCITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     K 
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHKR 1021


>gi|261883735|ref|ZP_06007774.1| bifunctional preprotein translocase subunit SecD/SecF
           [Campylobacter fetus subsp. venerealis str. Azul-94]
          Length = 203

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 82/147 (55%), Gaps = 3/147 (2%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           F+    L +I  L+ D    +   ++  +E ++T +AAVLT++GYS+ND +V +DR+R+N
Sbjct: 38  FEXRMGLASIVGLLHDAFFMVAIXSILRLEVDITFIAAVLTIVGYSINDTIVTFDRIREN 97

Query: 748 MKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           +        +    ++++KS+ +TLGRSV T +     V+ + ++G   I +F+I +  G
Sbjct: 98  LNKMKKIDNAEDLANIVNKSLRQTLGRSVNTVLTVVFVVVALLIFGAPSITNFSIALLIG 157

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++    SSIFI+A +   +     K  
Sbjct: 158 LIAGTYSSIFISAQLWYVMKVKEIKQK 184


>gi|300772558|ref|ZP_07082428.1| RND superfamily multidrug resistance ligand:proton (H+) antiporter
           [Sphingobacterium spiritivorum ATCC 33861]
 gi|300760861|gb|EFK57687.1| RND superfamily multidrug resistance ligand:proton (H+) antiporter
           [Sphingobacterium spiritivorum ATCC 33861]
          Length = 1052

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/693 (11%), Positives = 183/693 (26%), Gaps = 38/693 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +     LLI     L +  + RFP   P   +  G    GG       + 
Sbjct: 8   RPVMATVISVV-----LLILGIIGLLRLPVTRFPDISPPTVMVSG-SYPGG-------NS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           +  +   +    +++      E I   +       I++ F      +  A  V   +Q  
Sbjct: 55  EAVIRSVVTPLEEQINGVENMEYIKSSASNDGSFSISIIFKQGVNADQAAVNVQNRVQQA 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIGISESTI 181
              L  +  +  L T+ ++   I++     +       +     +    + QI       
Sbjct: 115 TPILPEEVIRMGLTTSKQQNSMIMIFNVYTEDNSKYDELFLQNYVNINVLPQIKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    +P ++       A ++      +        G            
Sbjct: 175 QAQVFGVKDYSMRVWLNPQKMAAYGLIPADINQAISSQSIEAAPGKLGEES--------- 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                    +   +I     G           I           
Sbjct: 226 --------DAALEYVMRYKGKKNQTEEYENIIVKRNGTELVRLRDVARIEFGSINYSGNS 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             + N        +         P    +           +   
Sbjct: 278 TSNGKNAVTVAILQTTGSNANDIEIGVRDVLTDASKTFPPGVKYVNLMSTKERLDEATGQ 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV IV+F+ +   +  ++   ++ + ++ T   L + G T+ + ++  +V
Sbjct: 338 VKSTLIEAFILVFIVVFLFLQDFRSTIIPAIAVPVAIVGTFFFLLVFGFTINVLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENR----KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           L IG+ VD  I+V E +  +        +    S     + A  +I        I    +
Sbjct: 398 LAIGIVVDDAIVVVEAVHSKMEGTNLTGKEATHSAMGEITGAVISITLVMSAVFIPIGFM 457

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK--MKSIDINPLSRFFLIP 535
               G   + FA T+ ++I+IS   A+++  A+   +++       +             
Sbjct: 458 TGSSGIFYKQFAYTLAIAIIISAVNALTLTPALCALLLKNNHAAGHADPAAKAGFKKRFF 517

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 F       +      +           L  G+     +          D   + 
Sbjct: 518 TAFNAGFDNLTGKYIKGLKFLTAKKWIGAGFILLITGVAGWLMMSTPKSFVPMEDDGFII 577

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            NL       +       E+   +  + +  ++ +      ++    +    +  I+   
Sbjct: 578 YNLSMPPGTALDRTTATAERIDAILEKTESVETSSTITGFNILSNSASPAYAMGFIKLKP 637

Query: 656 IVGPKISRELIR-KGIVGVIISAIAMLIYIWIR 687
                  +++    GI+    +AI     +  R
Sbjct: 638 KKERGKVQDIDEIMGILSGQFAAIKEGTVMAFR 670



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 85/246 (34%), Gaps = 9/246 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              +L  +R              N        V +            +   V+  +T+  
Sbjct: 253 NGTELVRLRDVARIEFGSINYSGNSTSNGKNAVTVAILQTTGSNANDIEIGVRDVLTDAS 312

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
                    +        L          +I + I + I +++    +   +     + +
Sbjct: 313 KTFPPGVKYVNLMSTKERLDEATGQVKSTLIEAFILVFIVVFLFLQDFRSTIIPAIAVPV 372

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T  F  +FG   N+  + A++  IG  V+D +VV + +    K+  T+++ ++   
Sbjct: 373 AIVGTFFFLLVFGFTINVLTLFALVLAIGIVVDDAIVVVEAVH--SKMEGTNLTGKEATH 430

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++ E  G  +  ++      +P+    GS       FA  +A  I+++A +++ +   +
Sbjct: 431 SAMGEITGAVISITLVMSAVFIPIGFMTGSSGIFYKQFAYTLAIAIIISAVNALTLTPAL 490

Query: 820 LLFIYD 825
              +  
Sbjct: 491 CALLLK 496



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +I++   + +Y  +      +   L  + ++   I          G++ N+     ++ L
Sbjct: 878  IILTLCLLFVYFLLAAQYESYLLPLSVLLSIPTGIIGAFASIKAIGLDNNIYVQVGLIML 937

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G    + +++ +     ++      S +D         L   + TS+A  + ++P+ V 
Sbjct: 938  VGLLAKNAILIVEFA---VQRRAAGSSIKDSAIDGARSRLRPIIMTSLAFIVGMIPLMVA 994

Query: 790  GGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G       S +   A G++      +F+   + +     + K
Sbjct: 995  TGGSAMGNRSISTGAAIGMLTGVIFGVFVIPLLYMLFQYLQEK 1037


>gi|212703366|ref|ZP_03311494.1| hypothetical protein DESPIG_01409 [Desulfovibrio piger ATCC 29098]
 gi|212673212|gb|EEB33695.1| hypothetical protein DESPIG_01409 [Desulfovibrio piger ATCC 29098]
          Length = 1031

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/565 (11%), Positives = 162/565 (28%), Gaps = 33/565 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GLL           +   P                    +     
Sbjct: 10  RPIATSLLMVALLLSGLLA-----YHYLPMAALPQIDYPTIQ---------VQTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F  S   +    +V   +   
Sbjct: 56  SEVMAAVVTSPLERQLGTMSGLVQMTSLSSAGASVITLQFDLSVPLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +          +++   +             +  +   +I        
Sbjct: 116 DNLLPSDLPNPPVYNKVNPADPAIMT-LAVYSDAMPLTRLEDLVDTRLAQKISQITGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +PS L     T A +       N +                    
Sbjct: 175 VTLSGGQRPAVRVQVNPSALASAGLTMADVRSAIASANVNDAKG---------------S 219

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +     S I  N   A+ +      +   +   +       V        LA  +    
Sbjct: 220 FDGPQRTSTIDANDQLASAEEYARTIIGYSNGAPLRLEDVATVEEGAENARLAAYVADGE 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +     ++   L   L+          V          +    
Sbjct: 280 QGFRPAIVLSIQRQPGANVITVADSITRLLPQLQQALPGHVRVQVVTDRTTTIRATVHDV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV+ V+++ +   +  ++   ++ L+++ +L ++ L G +L   ++  +V+
Sbjct: 340 QLELVLAVVLVIAVIWIFLRNVQATIIPALAVPLSLVGSLGVMYLAGFSLNNLTLMALVI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +  +G  +   TI    ++ +   + L F G 
Sbjct: 400 ASGFVVDDAIVVIENISRYLENGYKPLQAALVGAGQIGFTIISLTLSLVAVLIPLLFMGD 459

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ ++ILIS   ++S+   +   ++R ++ +  + N         +   
Sbjct: 460 VAGRLFREFAVTLAVTILISAVISLSLTPMLCAVMLRPERHREGEGNFFPALLRWYEVKL 519

Query: 540 IQFMRARFWGVGISILFSICSICLL 564
              +  +   + +++   + S+ + 
Sbjct: 520 DWVLAHQRLTLAVAVGTLLLSVAMY 544



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 56/150 (37%), Gaps = 7/150 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +     + L +  +LG   L G   N   + A++   G+ V+D +VV + +
Sbjct: 356 IFLRNVQATIIPALAVPLSLVGSLGVMYLAGFSLNNLTLMALVIASGFVVDDAIVVIENI 415

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +                 +     +  +++    ++P+   G   G +   FA+ +
Sbjct: 416 ---SRYLENGYKPLQAALVGAGQIGFTIISLTLSLVAVLIPLLFMGDVAGRLFREFAVTL 472

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           A  I+++A  S+ +  P+L  +     ++ 
Sbjct: 473 AVTILISAVISLSL-TPMLCAVMLRPERHR 501



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 88/242 (36%), Gaps = 8/242 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L  ++            +  +  + +   +  +    +  V++ +  +   S+++   
Sbjct: 783  SALVRMEERSARPATMRQGQFPVATISFNVAEGSSLGAAVRAVEETLASLELPSSLRCQF 842

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFAL 713
                          +  ++ + + M I + + ++ Y     I + +    I  TL    L
Sbjct: 843  QGAAHAFATSTDNQVWLLLAAVVTMYIVLGVLYESYIHPVTILSTLPSAGIGATLALM-L 901

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+E  +  +  ++ LIG    + +++ D   +           +  I ++    L   +
Sbjct: 902  CGMELGVVGIIGIILLIGIVKKNAIMMIDFALE--AERQEGKDPQAAIRQACLLRLRPIL 959

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+MAA +  LP+ +    G  +     + M  G++V+   ++F    I ++      K 
Sbjct: 960  MTTMAALLGALPLMIGWGMGAELRRPLGVTMVGGLIVSQVLTLFTTPVIYIWFARLAEKL 1019

Query: 831  AR 832
             R
Sbjct: 1020 GR 1021


>gi|115376308|ref|ZP_01463547.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1) and Heavy
           Metal Efflux (HME) families, permease protein
           [Stigmatella aurantiaca DW4/3-1]
 gi|115366658|gb|EAU65654.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1) and Heavy
           Metal Efflux (HME) families, permease protein
           [Stigmatella aurantiaca DW4/3-1]
          Length = 1031

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/519 (11%), Positives = 142/519 (27%), Gaps = 38/519 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            +++  +I   GL       + Q                                  + V
Sbjct: 2   ALVVNLIIIIAGLQAIQSLNVRQYPRSESADITVTTA--------------YVGANAELV 47

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
            GF+    +   +             Q  + I      +        +++  +  V   L
Sbjct: 48  RGFITTPLERAIASADGIDYIESQSLQGVSTIRARLKLNYDANRALSEISAKVDQVRGDL 107

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             + +  ++   + +        +     +    E +  ++R    ++   E   +    
Sbjct: 108 PPEAQVPVINIESAESQFAAAYLSFSSDFLKQ-NEITDYLVRVVQPRLSAVEGVQRADLL 166

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                 +     P R+  L  + A++       N                 G       +
Sbjct: 167 GGRTFAMRIWLKPDRMAALNISPAQVRQALATNNYLSA------------VGQTKGSLVQ 214

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V ++      +   F          +     G          ++                
Sbjct: 215 VNLTANTDLRSVEEFRQ--------LIVRRDGGAVVRLSDIADVVLGAEDYDSDVRFVGQ 266

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                        +    +         L+          +          +      T 
Sbjct: 267 TAVFIGIWALPHANSLDVLRNVRTEMEALQRDLPEQIKGTIAYDGTDYIQNAIDEVVNTL 326

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V++V+F+ +   +  L+   +I +++I T+ L+ + G T+ L ++  +VL +GL
Sbjct: 327 GETLLIVVVVIFLFLGSVRSILIPVVAIPVSLIGTVFLMQVFGFTVNLLTLLAVVLSVGL 386

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GG 483
            VD  I+V E +    R   S   +   G       I    IT       + F G   G 
Sbjct: 387 VVDDAIVVVENVERHLRDGLSPLDAALKGARELVGPIIAMTITLAAVYAPIAFQGGLTGS 446

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             R FA+T+  ++ +S   A+++   M   +++      
Sbjct: 447 LFREFALTLAGAVTLSGVVALTLSPMMSAALLKAGHEDK 485



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 89/233 (38%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS +   +   +  D   +       F+        +S+   R +    + +   +P 
Sbjct: 242 VRLSDIADVVLGAEDYDSDVRFVGQTAVFIGIWALPHANSLDVLRNVRTEMEALQRDLPE 301

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                    G    +  I + +  +  + + +++ I++        L  +  + + +  T
Sbjct: 302 QIKGTIAYDGTDYIQNAIDEVVNTLGETLLIVVVVIFLFLGSVRSILIPVVAIPVSLIGT 361

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +    +FG   NL  + AV+  +G  V+D +VV + +    +     +S  D   K   E
Sbjct: 362 VFLMQVFGFTVNLLTLLAVVLSVGLVVDDAIVVVENV---ERHLRDGLSPLDAALKGARE 418

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +G  +  ++       P+A  G   GS+   FA+ +A  + ++   ++ ++ 
Sbjct: 419 LVGPIIAMTITLAAVYAPIAFQGGLTGSLFREFALTLAGAVTLSGVVALTLSP 471



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 63/174 (36%), Gaps = 21/174 (12%)

Query: 672  GVIISAIAMLIYIWIRF-KWYFALGAI-----TTLILDITKTLGFFALFGIE-------- 717
              +++ + + + +  +F  +   L  +       L   +  T        +         
Sbjct: 835  AFLLAVVLIFLVLAAQFNSFRDPLIILAGSVPLALFGALLTTFLKMPNPNMPYFTDGFTT 894

Query: 718  -FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              N+ +   ++TL+G    + +++ D      +L     +  D + ++ +E L   + T+
Sbjct: 895  TLNIYSQVGLVTLVGLVSKNGILIVDFAN---RLQAEGRTKLDAVREAASERLRPILMTT 951

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +A      P+ +    G +   S  + +  G+ +    ++F    I L I   R
Sbjct: 952  VATVAGHFPLVLVEGPGAAARNSIGLVLVTGMAIGTFFTLFFVPAIYLLIARTR 1005


>gi|254432539|ref|ZP_05046242.1| multidrug efflux RND transporter MexF [Cyanobium sp. PCC 7001]
 gi|197626992|gb|EDY39551.1| multidrug efflux RND transporter MexF [Cyanobium sp. PCC 7001]
          Length = 1051

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/552 (11%), Positives = 153/552 (27%), Gaps = 30/552 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  ++   G +      LP   ++  P   P                    
Sbjct: 9   LRRPVLTLVISLLVLLAGFVS-----LPGLQIENLPPIAPGRVT---------VSTSYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++  + L++      +     + ITLSF      E           
Sbjct: 55  ASPEVVEQGVTTLLEKQLNGLERLDQVRSTSSAGSSSITLSFEGG-DPEINQINAQNEAA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            VN +L     +  +      +  +++   + D+ +      S  + +  ID++      
Sbjct: 114 VVNPRLPPQVARFGVRVRRSSDDLLMVLSFSADRDLYDDTFLSGWVEQVVIDRLQRVSGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +        +      DP+RL QL  T   +       N        G     D     
Sbjct: 174 GEARLFGGSPLAFRLWLDPARLNQLGLTITDVRDALEEQNVLAALGQAGDAPAPDDQMLT 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  +  +  +                 + ++    G                      
Sbjct: 234 LPLRMEGRLRSVQEFEQ------------LVVAPTPEGGVTLLRDVGRVTLGSENYDAIA 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +              +     P     V          +  
Sbjct: 282 TNLQGKATVAMGIFQRDGSNALDVSRGISTALDEITPNLPPGVEFQVIIDEAETVRQNID 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +      LV + L + +   +  L++   + + ++ +L +L L  +++   ++ G+
Sbjct: 342 RTLASLRDAVLLVFLALLLGLGNSRLALLSALVVPVALVGSLTVLRLTDSSINTLTLFGM 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  GL VD  I+V+E I     +      +     +     +  +++  +   + +   
Sbjct: 402 VLATGLVVDDAIVVSEDIGRRIEQGHPPLLAAREAMAELGGAVVATSLVLIAVFLPVLTL 461

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG   R      +T+G +I+ S F A++        ++                      
Sbjct: 462 GGSTGRLYAPIGLTIGATIVFSTFNALTFTPVAASRLLPAGGGGEPAWLLRWIDPPRRAL 521

Query: 538 IAIQFMRARFWG 549
            +++    R+  
Sbjct: 522 ESLEGPYDRWLT 533



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 46/129 (35%), Gaps = 8/129 (6%)

Query: 694 LGAITTLILDITKT--LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
           L  ++ L++ +     L    L     N   +  ++   G  V+D +VV + +    +  
Sbjct: 367 LALLSALVVPVALVGSLTVLRLTDSSINTLTLFGMVLATGLVVDDAIVVSEDI---GRRI 423

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVA 808
                      +++ E  G  V TS+      LP+   GGS         + +   IV +
Sbjct: 424 EQGHPPLLAAREAMAELGGAVVATSLVLIAVFLPVLTLGGSTGRLYAPIGLTIGATIVFS 483

Query: 809 ASSSIFIAA 817
             +++    
Sbjct: 484 TFNALTFTP 492



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/120 (13%), Positives = 45/120 (37%), Gaps = 6/120 (5%)

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +  ++     +L L+  +  + +++ +   + +      +     I  +    L   + T
Sbjct: 923  LPLDVYGRMGLLVLVSLAAKNGILIVEFANQRLAA---GMPLEQAIHGAAVARLRPILLT 979

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++++    +P+      G +   S    +  G++VA   S+F+   I   +  W     R
Sbjct: 980  AISSLAGFMPLLFASGAGAASRTSIGTVVFAGLLVATVLSLFVVPVIYRIVKGWELGRQR 1039


>gi|54293704|ref|YP_126119.1| hypothetical protein lpl0757 [Legionella pneumophila str. Lens]
 gi|53753536|emb|CAH14991.1| hypothetical protein lpl0757 [Legionella pneumophila str. Lens]
          Length = 1015

 Score =  146 bits (367), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/517 (13%), Positives = 165/517 (31%), Gaps = 41/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN-RISLGLDLRGGSHLVLEV 60
           +     +++  +I   G+     N + +  + ++P        I  G             
Sbjct: 9   KRPVLSIVVSMLIFLFGI-----NSIYKMQIRQYPKMENTVITIMTG----------YPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            + + + GF+    +   +  +       S +Q  + ITL+   +   +     V   +Q
Sbjct: 54  ADAELIAGFITTPLESAVASAEGIDYMTSSSQQGLSTITLNIKLNFDPQVAFTDVMSKVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L  + ++ +++  ++   +++    +   +     + +    R    Q+   +  
Sbjct: 114 QTLNQLPKESQQPVILKKSDSSTALMYISLDSKDMTPQ--QITDYATRVVQPQLQTVDGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    +P ++  L  T A +S      N           ++       
Sbjct: 172 AKADILGGQTYSMRIFMNPIKMAALNVTPADVSAVLASNNFLTAAGSTKSEYVA------ 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  K +++ +                   +                 +          
Sbjct: 226 INVTAKTDLNNVEEFE--------------RLIVKSDKGSIIRLRDIAKVELGSQNYDSS 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
               +        +     +    I  A  L   +     P     +          S  
Sbjct: 272 VTFNSKKAVFISITPTPTANPLTVINDARKLFPSIVREFPPSLTGTIVYDATAFIRASIH 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A +V+IV+F+ +   +  L+   +I L+++    L+ +LG ++ L ++   
Sbjct: 332 EVMETIIEAAVIVIIVIFLFLGSIRSVLIPVVTIPLSLVGVCTLMLILGYSINLLTLLAF 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     + ++ F +  +G     + +    IT       + F 
Sbjct: 392 VLAIGLVVDDAIVVVENVHRHLEEGKNPFEAAIIGAREIATPVIAMTITLAAVYAPIGFM 451

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               G   + FA T+  +++IS   A+++   M   I
Sbjct: 452 SGLTGALFKEFAFTLASAVIISGVIALTLSPMMCSKI 488



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 66/160 (41%), Gaps = 6/160 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I   + + + + + +  +++ +   L  + ++ + I   L    L     N+     ++T
Sbjct: 845  IFAFLFAIVVIFLVLAAQYESFRDPLIVLISVPMSICGALIPLNLGVATINIYTQVGLIT 904

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG      +++ D    N      ++  R  ++++    L   + T+ A    V+P+ +
Sbjct: 905  LIGLISKHGILIVD--FANHLQREKNLDKRAAVEEAAGIRLRPILMTTAAMVFGVIPLLI 962

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G +      + ++ G+++    ++F+   +  ++ +
Sbjct: 963  ASGAGAASRFDIGLVISTGLLIGTCFTLFVVPTLYTYLAE 1002



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L  + T+ L +        + G   NL  + A +  IG  V+D +VV + +
Sbjct: 350 LFLGSIRSVLIPVVTIPLSLVGVCTLMLILGYSINLLTLLAFVLAIGLVVDDAIVVVENV 409

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +       E     +  ++       P+       G++   FA  +
Sbjct: 410 H---RHLEEGKNPFEAAIIGAREIATPVIAMTITLAAVYAPIGFMSGLTGALFKEFAFTL 466

Query: 802 AFGIVVAASSSIFIAA 817
           A  ++++   ++ ++ 
Sbjct: 467 ASAVIISGVIALTLSP 482


>gi|329961685|ref|ZP_08299731.1| RND transporter, HAE1 family [Bacteroides fluxus YIT 12057]
 gi|328531557|gb|EGF58394.1| RND transporter, HAE1 family [Bacteroides fluxus YIT 12057]
          Length = 1138

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 69/521 (13%), Positives = 145/521 (27%), Gaps = 44/521 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +GL+      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGLI-----GLATLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +     N    I++ F      +  A  V  
Sbjct: 51  QGANAQTVLNSVIAPLEDQINGVENMMYMTSNASNNGSADISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +++     +    +            I ++   
Sbjct: 111 RVSMAQGLLPAEVTKVGVTTQKRQTSMLMVFSIYDEADQYNIEFLENYANINLIPEVKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q       ++      N       FG    R   
Sbjct: 171 NGVGDATVLG-QDYSMRIWLKPDIMAQYKLVPNDIAGVLAEQNIEAAPGQFGE---RGDQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                NI       
Sbjct: 227 SFQYTIRYKGRL-------------QQPEEFENIVVKALGDGEVLRLKDIANIELGRLSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     + +             + +        
Sbjct: 274 NFNNTVNGHKSVTCIVYQMAGTNATQTISDLEEVLSKASETLPSGLKINIAQSANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVIKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + +VL I + VD  I+V E +  +  +   S   +     S     I    +  +   V 
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARLASIDAMSELGGAIISITLVMMSVFVP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + F G   G   R F +TM ++I  S   A+++  A+    
Sbjct: 454 VSFMGGTAGTFYRQFGLTMAIAIGFSALNALTLSPALCAIF 494



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/310 (10%), Positives = 84/310 (27%), Gaps = 28/310 (9%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                       +         ++     N   + +    + V     +       +++ +
Sbjct: 816  MQGYFGGLYASNFNSFGKMYRVMIQAEPNATKNLESLSSIKVRNGNEMAPITQFVSIKKV 875

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               DI  +        ++        S      +  V ++             E+ G   
Sbjct: 876  YGPDIISRFNLYTSMKVMVAPASGYTSGQALAAIAEVAQENLPAG-----FAYELGGMAR 930

Query: 662  SRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALF 714
                      G+I     + +Y+ +      +   L  + +    L+       G  +L 
Sbjct: 931  EEAETSGSTTGLIFILCFVFVYLLLSAQYESYILPLSVLLSVPFGLLGSFLFVSGIGSLG 990

Query: 715  GIEFNLTAV----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             I      +           A++ L+G    + +++ +     +      +S        
Sbjct: 991  NIPALKMILGTMSNDIYMQIALIMLMGLLAKNAILIVEFA---LDRRKMGMSITWAAVLG 1047

Query: 765  INETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + TS+A  + +LP+      G +   +       G+++     IFI   + +
Sbjct: 1048 AAARLRPILMTSLAMIVGLLPLMFASGAGANGNRTLGTSAIGGMLIGMILQIFIVPALFV 1107

Query: 822  FIYDWRAKNA 831
                 + K  
Sbjct: 1108 AFQYLQEKIK 1117



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 84/237 (35%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            + +        + +      +    +  Q    ++      LE V  K +E +P     
Sbjct: 262 DIANIELGRLSYNFNNTVNGHKSVTCIVYQMAGTNATQTISDLEEVLSKASETLPSGLKI 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N            I + I  +I + I + I ++I        L     + + +  T    
Sbjct: 322 NIAQSANDFLFASIHEVIKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   NL  ++A++  I   V+D +VV + +   +     S     +   +++E  G 
Sbjct: 382 KLIGFSINLLTLSAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARLASI--DAMSELGGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  ++      +P++  GG+       F + MA  I  +A +++ ++  +      
Sbjct: 440 IISITLVMMSVFVPVSFMGGTAGTFYRQFGLTMAIAIGFSALNALTLSPALCAIFLK 496


>gi|213966109|ref|ZP_03394296.1| protein-export membrane protein SecD [Corynebacterium amycolatum
           SK46]
 gi|213951207|gb|EEB62602.1| protein-export membrane protein SecD [Corynebacterium amycolatum
           SK46]
          Length = 641

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 126/595 (21%), Positives = 221/595 (37%), Gaps = 80/595 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + N    +L   +  + L  AL  F                +  LG+DL+GG+ + L   
Sbjct: 13  KRNWPQWLLALFVGFLILTYALVFFTGGG----------SAKPKLGIDLQGGTRVTLVPQ 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA---DKVTLF 118
            +      L      L + +   G+    +    + + ++       +          LF
Sbjct: 63  GEKPTRDQLDQARKILENRVNGMGVSGAQVVTDGDTLVITVP-GEDSQEARTLGQTSQLF 121

Query: 119 LQGVNS--KLNVDPKKNLLVTTTEKEISIV--LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            + V    +   +     +V  T ++   V  LS+ +  + +    +   E  ++ ID  
Sbjct: 122 FRPVEQPTQGPDEAAFGEVVKKTAEDWVSVGVLSKEDATKRVDDLYKDMNETQKRAIDAF 181

Query: 175 G--------------------------------ISESTIQRLGSHRILIQLPGEQDPSRL 202
                                              E+   R     +L+     +DP+  
Sbjct: 182 KEQNPDQPVPEELSKSLGEAPKLDATAPAKPANSIEAAELRTKVRDVLLATRQSEDPTAQ 241

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED------------KVEIS 250
                     +   V P          +       G    +                 +S
Sbjct: 242 FAAAALMTCDNRDAVDPLQGADDPAKPLVTCAPEGGKAVFLGKAPLLIGQEDEAKGERLS 301

Query: 251 GIHLNGATANFDPKTHKPVVDISFD-------EMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           G  ++           +               + GAR + ++T D + + +A+VLD +V+
Sbjct: 302 GDAIDTNAPITGGYDQQSGQIQVSFSFKSGKNDTGARTWTKLTNDYLQRQVAIVLDSKVI 361

Query: 304 TAPVINQA-IPSGKAQISGNFTIETAGILAAMLRAGSLPIKL------NIVEERNVGADL 356
           +APVI +A       +I+G+F+I+ A  LA  LR G+LP+               + A L
Sbjct: 362 SAPVIQEATPVGSATRITGDFSIDEAQGLANNLRYGALPLSFAGEDGEPGGTTTTIPAML 421

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG----ATL 412
           GS S+  G  A + G+ LIV++ IVLY   G+++  S+     +   +L LLG     +L
Sbjct: 422 GSASLEAGLLAGIIGIALIVVYAIVLYRGLGVISLVSLAAAGAMVYGVLVLLGRWIGYSL 481

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            L  IAGI++ IG+  DS I+  ERI++E R  ++   ++   + RA  TI   N  ++I
Sbjct: 482 DLAGIAGIIISIGVTADSFIVFFERIKDEIRAGRTFRSAVPHAWRRARRTILSGNFVSII 541

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           A VVL+    G VRGFA T+GLS    + TA  +   ++I   R     S     
Sbjct: 542 AAVVLYILAVGDVRGFAFTLGLSTAFDIVTAFLVTAPLVILATRKWPALSKPSMN 596



 Score = 89.0 bits (218), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 88/272 (32%), Gaps = 11/272 (4%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                G +  G      L N  +   V       +    +  +         +   +   
Sbjct: 326 FSFKSGKNDTGARTWTKLTNDYLQRQVAIVLDSKVISAPVIQEATPVGSATRITGDFSID 385

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI-SRELIRKGIVGVIISAIAMLIYIW 685
           ++      L      ++          T    P +     +  G++  II    +++Y  
Sbjct: 386 EAQGLANNLRYGALPLSFAGEDGEPGGTTTTIPAMLGSASLEAGLLAGIIGIALIVVYAI 445

Query: 686 IRFK-----WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           + ++        +L A   ++  +   LG     G   +L  +A ++  IG + +  +V 
Sbjct: 446 VLYRGLGVISLVSLAAAGAMVYGVLVLLG--RWIGYSLDLAGIAGIIISIGVTADSFIVF 503

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++R++  ++      +FR  +  +        +  +  + I+ + + +     +  FA  
Sbjct: 504 FERIKDEIRA---GRTFRSAVPHAWRRARRTILSGNFVSIIAAVVLYILAVGDVRGFAFT 560

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +         ++  + AP+++         ++
Sbjct: 561 LGLSTAFDIVTAFLVTAPLVILATRKWPALSK 592


>gi|325107252|ref|YP_004268320.1| protein-export membrane protein SecD [Planctomyces brasiliensis DSM
           5305]
 gi|324967520|gb|ADY58298.1| protein-export membrane protein SecD [Planctomyces brasiliensis DSM
           5305]
          Length = 968

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 96/207 (46%), Gaps = 4/207 (1%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +      S     ++ ++     EI  +    +   + P +  ++  KGI+ + ++AIA+
Sbjct: 314 IISGSFTSEEVNELVSVLNAGALEIPLVKEPVSEYTISPLLGVDVQEKGIMAISVAAIAV 373

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           LI++ + + W   + A   L +++   LG  AL    F L  +A ++  IG +V+  V++
Sbjct: 374 LIFMVVYY-WTAGIIADICLAVNVALVLGAMALIDATFTLPGLAGLVLTIGMAVDANVLI 432

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           ++RMR+ +     S S R  I     +     +  ++   IS + +   G   +  FA+ 
Sbjct: 433 FERMREEL---NRSSSLRMAIQNGFGKAFSTILDANLTTLISAIILYAIGTDQVRGFAVT 489

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWR 827
           +  GI+++  S++++   +   + + R
Sbjct: 490 LFIGIIMSMFSALYVGRLMFDVLENKR 516



 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 18/246 (7%)

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                  +  +        ++ +    ++Q ++ E +      +               +
Sbjct: 725 GTAGSGMEADESAVQRYSEMELKVASEISQDQLQETLVSMQERMANTPDFSEVNTFSSAV 784

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA-------- 712
           + E   K ++ ++ S  A++ YIW RF    F L A+  L+ D+   LG  A        
Sbjct: 785 AGETQSKALLAILASLAAIIAYIWFRFSQIAFGLAAVVALVHDVLVVLGLVAIASMLSAT 844

Query: 713 -------LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  L   + NL  +AA LT+IGYS+ND +VV+DR+R+           +++I+ S+
Sbjct: 845 PLGPVLQLTDFKINLPMIAAFLTIIGYSLNDTIVVFDRIREVRGKNP--DITKEIINTSV 902

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           N+TL R++ TS+   + VL +   GG  +  FA  +  GI V   S+IFIA P+LL+   
Sbjct: 903 NQTLSRTILTSLTTLLVVLILYFIGGEGLHGFAFCLVAGIFVGTYSTIFIANPVLLYAAQ 962

Query: 826 WRAKNA 831
            R  +A
Sbjct: 963 RRKPDA 968



 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 127/663 (19%), Positives = 242/663 (36%), Gaps = 56/663 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR+      +  M+   G+   +   +    L        K+   LG+DL GG++LV + 
Sbjct: 30  MRSESRRFGIVLMVLAFGMAPFINQLIHGHNL--------KDAFRLGIDLAGGTNLVYQA 81

Query: 61  D-------EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIA 112
           D         +  +  +   +  +   +   G    ++RQ  ++++ +    +       
Sbjct: 82  DKEQAEASGKEISSSAMDELTRSIARRVNPSGTEEVTVRQVGEDRVEIIIPGAD-----T 136

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
           D V      +         +  ++          +             + +  +      
Sbjct: 137 DYVQAMKDKITRL---GSLEFGVLAARHDRAHQNIIARAEQSDSDDLFDGTQRVATWL-- 191

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
                    +               DP        +       +V     ++  +     
Sbjct: 192 ------PVARIQAGDNQGQLKDVTGDP--------SVDVFREREVNGQTIREFLVIVSPP 237

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
            +  DG   +           +  +                  +             +  
Sbjct: 238 EQKIDGRYLVNSRPTFDENGGVAVSFTFNARGGFLFQNLTGQYQPKKDGQKYRLAAILDG 297

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL--NIVEER 350
                     + +     A+ S    ISG+FT E    L ++L AG+L I L    V E 
Sbjct: 298 S---------IHSAPSINAVISESGIISGSFTSEEVNELVSVLNAGALEIPLVKEPVSEY 348

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            +   LG D   KG  AI    + +++FM+V Y   G++AD  + +NV L L  ++L+ A
Sbjct: 349 TISPLLGVDVQEKGIMAISVAAIAVLIFMVVYYWTAGIIADICLAVNVALVLGAMALIDA 408

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           T TLP +AG+VL IG+AVD+N+L+ ER+REE  ++ S+  ++  GF +A+STI D+N+T 
Sbjct: 409 TFTLPGLAGLVLTIGMAVDANVLIFERMREELNRSSSLRMAIQNGFGKAFSTILDANLTT 468

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           LI+ ++L+  G   VRGFA+T+ + I++SMF+A+ + R M   +      K +       
Sbjct: 469 LISAIILYAIGTDQVRGFAVTLFIGIIMSMFSALYVGRLMFDVLEN----KRLISASSLL 524

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSI-CSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              I     + F+  ++    +S++        L+     N  IDF GG  +        
Sbjct: 525 GKSIIGKTNLDFLGKQWLATILSLVVIAGGMTALVSRGNDNLDIDFTGGSMVTFQFTDNP 584

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +   R+ LE     D++ +      +             ++ +  + V   + E    S
Sbjct: 585 GIEDARAALEEQFGNDMALERLIVPTDNGAGEDQIFFRLRSKNQDRDEVASMVNEAFEAS 644

Query: 650 TIQ 652
              
Sbjct: 645 EFH 647


>gi|254561663|ref|YP_003068758.1| multidrug efflux system subunit C [Methylobacterium extorquens DM4]
 gi|254268941|emb|CAX24902.1| multidrug efflux system, subunit C; RND efflux exporter
           [Methylobacterium extorquens DM4]
          Length = 1104

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/576 (11%), Positives = 164/576 (28%), Gaps = 39/576 (6%)

Query: 56  LVLEVDEDDFVNGFL-QMYSDELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           ++++          +    +  L      +        +      +I L F  +R  +  
Sbjct: 45  ILVQAQMAGASPETMATTVAAPLERRLGAIADVNEMTSTSSTGTVRIVLLFGLNRDIDGA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
           A  V   +    + L    + N          S +L    +        +          
Sbjct: 105 ARDVQAAINAARADLPTSLRTNPTYRKFNPADSPILI-LGLTSDTLTPGQLYDSAATIVQ 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++   E           L  +  E DP+ L         +       N +         
Sbjct: 164 QRMSQIEGVGNVDIGGSSLPAVRVELDPTALFHYGIGLEGIRAGLASANANSP------- 216

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                            ++G       AN   +      DI                 + 
Sbjct: 217 -------------KGDIVAGDRRYQLYANDQGRQASDYRDIVVAYRNGAAVRLADVGEVV 263

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +    +  ++            +   +   T+E         +A         +    
Sbjct: 264 DSVEDKRNLGLVDGKPGVILFIYKEPGSNVVETVERVRAAIPQAKAALPGDIDLNISGDR 323

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S +  + T  I   LV+ V F+ +   +  L+   ++ +++I T A + +L  +
Sbjct: 324 SATIRASLASTEETLIIAVILVIFVTFIFLRSWRATLIPAVAVPISIIGTFAAMWMLDYS 383

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L + S+  +++  G  VD  I+V E I+      +    +  +G      T+   +++ +
Sbjct: 384 LDILSLMALIIATGFVVDDAIVVLENIQRHIEAGKPRVEAALLGAREVGFTVVSMSLSLI 443

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----------IRY 517
              + +   G   G   + FA+T+ ++IL+S+  +++    M   +              
Sbjct: 444 AVFLPILLMGGIVGRLFQEFAVTLSMAILVSLVLSLTTTPMMCALLLKPEAQMHAGKRPN 503

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
             ++ ++    +        +       R   + + I   +     +      +     G
Sbjct: 504 ILLRGLEGGFDALLRSYERTLRFALYHRRLTALSVFIAIGLTVYGYIIVPKGFFPDQDTG 563

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +  G+ A++ +    ++  LE       +    + 
Sbjct: 564 QLMGGIQADQRISFQSMKDKLERASAIVQADPAVES 599



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 69/209 (33%), Gaps = 7/209 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +  +          RV   + +    +     +  +      I   L       +I   
Sbjct: 284 FIYKEPGSNVVETVERVRAAIPQAKAALPGDIDLNISGDRSATIRASLASTEETLIIAVI 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + + +       W   L     + + I  T     +     ++ ++ A++   G+ V+D 
Sbjct: 344 LVIFVTFIFLRSWRATLIPAVAVPISIIGTFAAMWMLDYSLDILSLMALIIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +         +       E     V  S++     LP+ + GG V    
Sbjct: 404 IVVLENI---QRHIEAGKPRVEAALLGAREVGFTVVSMSLSLIAVFLPILLMGGIVGRLF 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             FA+ ++  I+V+   S+    P++  +
Sbjct: 461 QEFAVTLSMAILVSLVLSL-TTTPMMCAL 488



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 56/139 (40%), Gaps = 16/139 (11%)

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +GAI  L+             G EF + A+ AV  LIG    + +++ D         
Sbjct: 963  AGIGAIVALLT-----------TGTEFTIVALIAVFLLIGIVKKNAILMID--FAIDAER 1009

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVA 808
               ++  + I ++        + T++AA +   P+ V GG    +     I +  G++V+
Sbjct: 1010 NRGLTPGEAIYEACLLRFRPIMMTTLAAILGAAPLIVAGGEGAELRRPLGIAIVGGLIVS 1069

Query: 809  ASSSIFIAAPILLFIYDWR 827
               +++    + L++   R
Sbjct: 1070 QILTLYTTPVVYLYLDRLR 1088


>gi|268316445|ref|YP_003290164.1| acriflavin resistance protein [Rhodothermus marinus DSM 4252]
 gi|262333979|gb|ACY47776.1| acriflavin resistance protein [Rhodothermus marinus DSM 4252]
          Length = 1290

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 101/791 (12%), Positives = 230/791 (29%), Gaps = 85/791 (10%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                 + FPS    N +            V      + +   +    +E    +     
Sbjct: 29  YLTIPKESFPSIEIPNIV---------ITTVYPGASPEDIESLITKPIEEELQGITGIDE 79

Query: 87  GVFSMRQIQNKITLSF-ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              +  +  + I + F  D    +    KV   +    ++L  D ++ ++      E+ I
Sbjct: 80  IRSTSTEGVSTIVVEFMPDQISLDEAFQKVRDKVDIAKAELPEDAEEPIVSEIDLSELPI 139

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +           +A+ +  E+     D++      ++      +  ++    D + L+  
Sbjct: 140 MTINLAAP----YALSRLKEVAEDLSDELEALPDVLEATVVGGLEREVQVNVDRAALQAY 195

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T   +       N +  G    V  L          E   EI+ I +           
Sbjct: 196 NLTFNDVINAIQRENTNLPGGSIDVDRLNYLVRVDGEFEVPEEINNIVIKAPNGKPIYVR 255

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
               V   + E  +   +            V +  +      +       ++  +   T 
Sbjct: 256 DVAEVVFGYKERDSYA-YLRVLQREEDGRLVPVHNQSGEPLQVVSLSIRKRSGANILETT 314

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E       + R         ++               +         V+ VL   +    
Sbjct: 315 EAIR--QVLDRFPFPAGTEVVITGDQSEDVRTLVRDLENNIISGLIFVVAVLLFFLGVRT 372

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             LV   +I L++  +  +   LG TL    +  +++ +G+ VD+ I++ E I     + 
Sbjct: 373 ATLVGI-AIPLSMFTSFLVFQALGYTLNFVILFSLIIALGMLVDNAIVIVENIYRFREQG 431

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFT 502
            S F +  +  +     +  S  T + A V + F+ G     +    +T+ +++  S+F 
Sbjct: 432 YSRFEAARLATAEVGGAVVASTATTVAAFVPMLFWPGIIGEFMSFLPLTLIITLTSSLFV 491

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A+ I   +  + +R +  K+                     R R     + +   +    
Sbjct: 492 ALVINPVLTGYFMRVEGEKAPRPPR----------------RVRVLAAAVILTLGLVLGL 535

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
             +   +   +       L      P+    +   L  L     +F ++  E+++ VR  
Sbjct: 536 ANWKTLVVLAVAVPVIYLLHRYIFSPIGNWFIHHGLPGLIQRYRAFLSWMLERDYSVRHA 595

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                    +            ++ L    +  + G      L   G +  ++  I +++
Sbjct: 596 LLRNTFALGS------FTLGVVLLVLGGGLSALLGGGPAGMVLTVPGTILAVVGLIGIVL 649

Query: 683 YIW----------IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL--- 729
           +            +R    F           +    G   L   E  LT +  +LTL   
Sbjct: 650 HTLETLFLGGWATVRGGLIFGAV--------VLVITGLMYLSPREVALTTIVELLTLPLL 701

Query: 730 ---IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
              +G                +         R LI   + +   R + + + A  ++L M
Sbjct: 702 IIVVGL---------------LGALLNRRGRRYLI---LTDNRARLLNSVLGALFAILAM 743

Query: 787 AVWGGSVIGSF 797
                + +  F
Sbjct: 744 FAIAPTGVEFF 754



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 71/218 (32%), Gaps = 4/218 (1%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           E                  +     +   +        + +       P  T        
Sbjct: 279 EEDGRLVPVHNQSGEPLQVVSLSIRKRSGANILETTEAIRQVLDRFPFPAGTEVVITGDQ 338

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
            +  R L+R     +I   I ++  +        A      + L +  +   F   G   
Sbjct: 339 SEDVRTLVRDLENNIISGLIFVVAVLLFFLGVRTATLVGIAIPLSMFTSFLVFQALGYTL 398

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           N   + +++  +G  V++ +V+ + +    +      S  +    +  E  G  V ++  
Sbjct: 399 NFVILFSLIIALGMLVDNAIVIVENI---YRFREQGYSRFEAARLATAEVGGAVVASTAT 455

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + +PM  W G +IG F   +   +++  +SS+F+A
Sbjct: 456 TVAAFVPMLFWPG-IIGEFMSFLPLTLIITLTSSLFVA 492



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 57/176 (32%), Gaps = 25/176 (14%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              ++I +  + + +  +F +       +  + L +   L    L    F L     +++L
Sbjct: 1077 TALLIGSALIFLIMIAQFNRVSGPFLIMIAVGLSLIGVLLGLILTRTAFGLMTFIGLISL 1136

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM--- 786
             G  VN+ +V+ D     M+L    +S  D I ++    L   + T++   I ++P+   
Sbjct: 1137 AGIVVNNNIVLID---YTMQLQRRGLSKHDAIIEAGATRLRPVILTALTTVIGLVPLTFG 1193

Query: 787  ---------------AVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                              G             +  G+      ++ I   +     
Sbjct: 1194 INIDFVGLLINWEPNFQLGSENTQFWGPMGTAIISGLTFGTFLTLVIMPVLYSSFD 1249


>gi|193214921|ref|YP_001996120.1| acriflavin resistance protein [Chloroherpeton thalassium ATCC
           35110]
 gi|193088398|gb|ACF13673.1| acriflavin resistance protein [Chloroherpeton thalassium ATCC
           35110]
          Length = 1081

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/517 (11%), Positives = 152/517 (29%), Gaps = 40/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +V+++S++  +GL         Q   +  P   P               +V    
Sbjct: 31  KRPTLVVVIFSVLGVLGLFS-----YNQLKYELLPKITPPYV---------SIAIVYPGA 76

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  S + K      +  +  +   + F   +  +     V   +  
Sbjct: 77  SPTEVETSITKPVEEAVSGIDKIETISSTAAEGISTTVIEFDQEKDVDLALQDVQRRVNE 136

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +      D K  ++      E+ ++      +       +    +  +   ++   +   
Sbjct: 137 ILETFPEDAKSPVISKFALDEVPVLRIGATAEMPN---TQFYQFLKDEVKPELAKVDGVG 193

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q +       ++    D  +LR    +  +++      N             +       
Sbjct: 194 QVILVGGDEREIRVNLDADKLRAYNLSLLEVTEMLKASNMDFPTGKIDDNDGQYIVRIAG 253

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +  + ++                    +             +           
Sbjct: 254 KLSSIEALRNLVISR-------------------DEKGNEIKLRNIAEVQDGQKETTALS 294

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +        +   ++  +G          L+ +    S       + +      + +  
Sbjct: 295 RVNGREAVGVLIQKQSGANGVEVSRNVRQSLSKLESLNSEMKLNFDIAQDASLFTIDAAD 354

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K   AI   +V +V+ + +   +  L+   +I  ++I T   +  LG TL L ++  +
Sbjct: 355 AVKSDLAIAVVMVALVMLLFLHSIRNSLIVMVAIPASLISTFIAMYALGYTLNLMTLLAL 414

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD +I+V E I       +    +   G +    T     +  ++    L   
Sbjct: 415 SLVVGILVDDSIVVLENIYRHLEMGEDRRTAALRGRNEIGFTALSITMVDVVVFFPLSLA 474

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               G  +R FAI M +S L+S+F + +I   +    
Sbjct: 475 TGLVGNIMREFAIVMVVSTLLSLFVSFTITPTLASRF 511



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 85/284 (29%), Gaps = 11/284 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +               +    L +  +   +   +R+  E       +         
Sbjct: 240 IDDNDGQYIVRIAGKLSSIEALRNLVISRDEKGNEIKLRNIAEVQDGQKETTALSRVNGR 299

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV--- 673
             V +  Q         V   V++ ++++  L++         + +          V   
Sbjct: 300 EAVGVLIQKQSGANGVEVSRNVRQSLSKLESLNSEMKLNFDIAQDASLFTIDAADAVKSD 359

Query: 674 --IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             I   +  L+ +        +L  +  +   +  T       G   NL  + A+  ++G
Sbjct: 360 LAIAVVMVALVMLLFLHSIRNSLIVMVAIPASLISTFIAMYALGYTLNLMTLLALSLVVG 419

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
             V+D +VV + +    +        R    +  NE    ++  +M   +   P+++   
Sbjct: 420 ILVDDSIVVLENI---YRHLEMGEDRRTAALRGRNEIGFTALSITMVDVVVFFPLSLATG 476

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G+++  FAI M    +++   S  I   +            +
Sbjct: 477 LVGNIMREFAIVMVVSTLLSLFVSFTITPTLASRFSKIERLTKK 520



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 90/248 (36%), Gaps = 12/248 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               + ++L       ++     +  ++ +     + +L  +P  SV       +     +
Sbjct: 804  RDGKLIELGQFADVYQTTGPTKLQRKDRNSSVVVMSQLVGRPLGSVGADIKKTVAASYAS 863

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
             + P S     +    + +      G+  +       LI + +   + +    + ++ L 
Sbjct: 864  GVFPKSITITYDGDMKQQAESSNTLGLAFMAGILFVYLIMVALYDSYTWPFVVLFSIPLA 923

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDL 760
            I   L   AL      + ++  V+ L+G    + +++ D   ++R+        ++  D 
Sbjct: 924  IIGALFALALSAKTLTIFSILGVIMLVGLVGKNAILLVDFTNKLREE------GMNTHDA 977

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            + ++  E L   + T++   + ++P+A+    G       A  +  G+  +   ++ +  
Sbjct: 978  LLEAGRERLRPILMTTLTMVVGMMPIALSHSSGSEWKSGLAWALIGGLSSSMFLTLVLIP 1037

Query: 818  PILLFIYD 825
             +  +  +
Sbjct: 1038 VVYTWFDN 1045


>gi|153838640|ref|ZP_01991307.1| acriflavin resistance plasma membrane protein [Vibrio
           parahaemolyticus AQ3810]
 gi|149747968|gb|EDM58828.1| acriflavin resistance plasma membrane protein [Vibrio
           parahaemolyticus AQ3810]
          Length = 603

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/609 (11%), Positives = 176/609 (28%), Gaps = 44/609 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAVF-----KMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    ++  +               ++ IT++   +         +      
Sbjct: 55  SANLIQGFITQPLEQAVAQADNIDYMTSQSVLGKSTITVNMKLNTDPNAALSDILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      D++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELSSS--QITDYLERVINPQLFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   L    DP+++  L  T   +       N           F+  +     
Sbjct: 173 KVDLYGGMKYALRVWLDPAKMGALKLTATDVMSVLNANNYQSATGQATGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V +  E+                      +                 +    +  +   
Sbjct: 233 QVSNVAELEA--------------------LVVKTGEGDVIRLGDIAKVTLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +          L   L           V   +  A   S   
Sbjct: 273 SANGQEAVVAAINAAPSANPINIAADVLDLLPQLERNLPSNIKMNVMYDSTIAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLSRFFL 533
              G   + FA+T+  S+ +S   A+++   M   +++  +        +          
Sbjct: 453 GITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSKMLKANEKPSKFEQKVHHILDGMTTR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +               I+F+   +   F        + KG + L   A    +L  
Sbjct: 513 YEGMLKAVMAHRPVVIAFAIIVFASLPVLFKFIPSELAPSEDKGVVVLMGTAPSNANLDY 572

Query: 594 VRSNLESLQ 602
           +++ +  + 
Sbjct: 573 IQNTMNDVN 581



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +                   E            + +     +  +  ++   +
Sbjct: 251 DVIRLGDIAKVTLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLDLLPQLERNL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + +  ++ +A+ +L+ I +    +   +  I T+ L + 
Sbjct: 311 PSNIKMNVMYDSTIAINESIHEVVKTILEAAVIVLVVITLFLGSFRAVIIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   
Sbjct: 428 REIAVPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIIALTLSPMMCSK 487

Query: 823 IYDWRAKNAR 832
           +     K ++
Sbjct: 488 MLKANEKPSK 497


>gi|90424059|ref|YP_532429.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
 gi|90106073|gb|ABD88110.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
          Length = 1034

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 68/567 (11%), Positives = 148/567 (26%), Gaps = 48/567 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +GL+           +   P+                  + ++  
Sbjct: 10  RRPVGTTLLAIGLFLLGLVA-----YKFLPVAAVPNVDFPM-------------IFVQAS 51

Query: 62  EDDFVNGFLQMYSD-ELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +       L      +        +      +I L FA  R  +  A  V  
Sbjct: 52  RPGADPSVMAATVAAPLERRLGEIAGIDQITSTSSLGSTRIQLQFAIGRDVDRAARDVQA 111

Query: 118 FLQGVNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            +    S L  D                + +       +   AI            +I  
Sbjct: 112 AINASLSDLPTDLPTLPKFRKANSAASPVFILALTSKTIQPSAI--YDVADTVIAQRISQ 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +   S      +    +P  L     +T  +    V  N      +F      ++
Sbjct: 170 VPGVGEVTVSGADQPAVRIALNPVALSTANISTDDVRTAIVNANPLGPVGIFNGARQSET 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +    E                      DI     G           +      
Sbjct: 230 LSTNKQMRTAAEF--------------------RDIVIKSSGGNVLRLSDVATVEDATRS 269

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                            + +   +   T++    L   L+                G   
Sbjct: 270 SRSIAWFNKQPAVLIQITKQGDANVIDTVDRVKALLPELKQWIPAGVEISTLTDRTGTIR 329

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S +  + T    A LV+ V+F+ +      + A  S+ L +  T A + L G ++   S
Sbjct: 330 ASVADMQWTLLATAVLVMGVVFVFLRRLTPTIAAGVSVPLALAGTCAGMWLAGFSINNLS 389

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  + + +G  VD  I++ E +     +  +   +   G  +   T+   +++ + A   
Sbjct: 390 LMALAISVGFVVDDAIVMIENMYRNLERGMAPLQAALDGAKQIGFTVLSISLSLVAAFTP 449

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F  G     +R F++T+  +I +S   ++++   +    IR     +           
Sbjct: 450 LIFMDGMVGRLLREFSLTLTFAIAVSTVVSLTVTPMICAHYIRGAVSHNETWFDRLIEGG 509

Query: 534 IPDCIAIQFMRARFWGVGISILFSICS 560
           +   ++      R       +   +  
Sbjct: 510 LSRLVSFYATTLRAVLGYPGLTMLVFF 536



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 72/213 (33%), Gaps = 10/213 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----RKG 669
            K   V +Q            ++ VK  + E+                +  +        
Sbjct: 277 NKQPAVLIQITKQGDANVIDTVDRVKALLPELKQWIPAGVEISTLTDRTGTIRASVADMQ 336

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              +  + + M +      +    + A  ++ L +  T     L G   N  ++ A+   
Sbjct: 337 WTLLATAVLVMGVVFVFLRRLTPTIAAGVSVPLALAGTCAGMWLAGFSINNLSLMALAIS 396

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G+ V+D +V+ + M +N+      ++          +     +  S++   +  P+   
Sbjct: 397 VGFVVDDAIVMIENMYRNL---ERGMAPLQAALDGAKQIGFTVLSISLSLVAAFTPLIFM 453

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            G V   +  F++ + F I V+   S+ +   I
Sbjct: 454 DGMVGRLLREFSLTLTFAIAVSTVVSLTVTPMI 486



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 82/223 (36%), Gaps = 6/223 (2%)

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
            +  +      + +     V        +++ + E+     I+ +         +   K  
Sbjct: 803  YHSQSFPSTTVSFNLQPDVPLQTATANIQRAVDELHMPEGIRGSFDGNAGDFAKTSSKQP 862

Query: 671  VGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++ + +AM I + + ++     L  I+TL       L    +      + A   ++ L
Sbjct: 863  LLILAALVAMYIVLGVLYESLAHPLTIISTLPSAGLGALLALQVTNTPLTIIAFVGIILL 922

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ D   +     +  +S  D I ++        + T+MAA  + +P+ V 
Sbjct: 923  IGIVKKNGIMMVDFALE--AERSRGLSSADAIFEACVVRFRPILMTTMAALFAGIPLVVA 980

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G  +     I +  G+ V+   +++    I L I   R +
Sbjct: 981  IGPGTELRRPLGITIIGGLFVSQILTLYTTPVIYLLIDRLRRR 1023


>gi|256819164|ref|YP_003140443.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Capnocytophaga ochracea DSM 7271]
 gi|256580747|gb|ACU91882.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Capnocytophaga ochracea DSM 7271]
          Length = 1052

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/624 (10%), Positives = 167/624 (26%), Gaps = 48/624 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKKEG-- 85
              + ++P   P               + +  +        + +     L   +      
Sbjct: 29  SLPISQYPDIAP-------------VTVQVSANYAGANAETVLKAVVIPLEEQINGVENM 75

Query: 86  --IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
             I   +       IT+ F      +  A  V   +   NS L  +  ++ +    +   
Sbjct: 76  DYITSSASNSGSANITVYFKQGTNGDIAAVNVQNAVSRANSILPSEVTQSGVTVRKQSSG 135

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
           +++      +      +     +    I  I                  +    DP +L+
Sbjct: 136 NLMFLTFFSENKELDDVFLQNYLSINVIPAIKRISGVGDASAFGGKTYSMRIWLDPQKLQ 195

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
                  +++    + +        G       +          ++S             
Sbjct: 196 AYGLNPTEVTAAISVQSREAAAGTLGQNSGSSYEYVIKYKGKYTQVS------------- 242

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +    +     G R         +                       S     + + 
Sbjct: 243 ---EYENIVLKALDGGRILRLKDVAKVELDALGYTGFSESKGRPAVAMGISQTPGSNAHE 299

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            I+    L   L+          +          + S    T      LV +V+++ +  
Sbjct: 300 IIQNIEKLLDELKPSLPEGITYTINYNANTFLDAAISKVVSTLLEAFLLVFLVVYIFLQD 359

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR-EEN 442
            +  L+   ++ ++++ T   L+L G ++ + ++  +VL IG+ VD  I+V E +  +  
Sbjct: 360 FRSTLIPAIAVPVSIVGTFFFLNLFGYSVNMLTLFALVLAIGIVVDDAIVVVEAVHAKME 419

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILIS 499
           + ++    +     +     I    +      V + F GG      + F +T+ ++I+IS
Sbjct: 420 QTHEKAKPATISAMNEITGAIISITLVMAAVFVPVTFMGGTTGVFYKQFGVTLIVAIVIS 479

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA----------RFWG 549
              A+++   +    ++    K  +       F     IA                R   
Sbjct: 480 AINALTLSPVLCSLFLKPHGNKEYEEKSWFGKFFHKFNIAFNAATRKYGQTFTFFLRHKW 539

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V + +L             +  G          ++    +  + +      ++  + S  
Sbjct: 540 VTLLLLLMAGGGIYFANKSMKSGFVPSEDQGFVMMDVSMIPGASMERVANIMREVNESLS 599

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTR 633
           N  G +N                 
Sbjct: 600 NIPGVENVTFVTGRGMISGEGSNN 623



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 87/238 (36%), Gaps = 7/238 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V              ++       +   Q    ++    + +E +  ++   +P     
Sbjct: 262 DVAKVELDALGYTGFSESKGRPAVAMGISQTPGSNAHEIIQNIEKLLDELKPSLPEGITY 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                        I K +  ++ + + + + ++I    +   L     + + I  T  F 
Sbjct: 322 TINYNANTFLDAAISKVVSTLLEAFLLVFLVVYIFLQDFRSTLIPAIAVPVSIVGTFFFL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   N+  + A++  IG  V+D +VV + +   M+          +   ++NE  G 
Sbjct: 382 NLFGYSVNMLTLFALVLAIGIVVDDAIVVVEAVHAKMEQTHEKAKPATI--SAMNEITGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +  ++      +P+   GG+       F + +   IV++A +++   +P+L  ++  
Sbjct: 440 IISITLVMAAVFVPVTFMGGTTGVFYKQFGVTLIVAIVISAINAL-TLSPVLCSLFLK 496



 Score = 46.2 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 44/422 (10%), Positives = 117/422 (27%), Gaps = 20/422 (4%)

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
            LS +     +  + G  +  G   ++ +   +    E R        +    + A+  + 
Sbjct: 598  LSNIPGVENVTFVTGRGMISGEGSNNGMGFFKLKPFEERSKLPGQD-IKSIINNAFRAVA 656

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            +     +I        G G   G +  +       +       +  +  +++  +++   
Sbjct: 657  NIKDANVIFFQPPSVPGFGVGGGVSFVLLDKSGSDISEVNKNAQEFLGALMQRPEIQFAQ 716

Query: 525  INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             +    +      I ++        V   +      I   +             +   + 
Sbjct: 717  TSFNVNYPQYQMDINVERAMQSGITVSTILSTLQNYIGGFYATDFTLYGKQYRVMVQSLP 776

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNF------DGEKNFLVRLQYQPGDSVAQTRVLEMV 638
              R    S+    +++          F       G ++      +      AQ       
Sbjct: 777  EARKDLNSLNSLFVKTGSGTMAPITEFVTLTRTFGPQSLSRYNLFTSVSISAQNNPPYST 836

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIR----KGIVGVIISAIAMLIYIWI---RFKWY 691
               +T +  ++        G   +              +I     +  Y  +      + 
Sbjct: 837  GDALTAVQEVAAQTLNNNYGIDYTGLTREEQNAGSQTILIFLLSLVFTYFILSAQYESYL 896

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + +L   I         FG+E N+    +++ L+G    + +++ +     ++  
Sbjct: 897  LPLSVLFSLPFGIFGAYLGQWFFGLENNIYFQISLIMLMGLLAKNAILIVEFA---VQRR 953

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
                S       +    L   + TS A  + ++P+      G +   S A   A G ++ 
Sbjct: 954  RMGESLSKAAINAAMARLRPILMTSFAFIVGLMPLVFASGVGAAGNRSVATGAAIGQLIG 1013

Query: 809  AS 810
              
Sbjct: 1014 TF 1015


>gi|256421013|ref|YP_003121666.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
 gi|256035921|gb|ACU59465.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
          Length = 1056

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/571 (12%), Positives = 152/571 (26%), Gaps = 32/571 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +     L++     +    + ++P   P      G              
Sbjct: 8   RRPVTAIVISVV-----LVLVGLLAMTNLPIGQYPEISPPTVQVTG---------TYIGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQ 120
           +   V        +   +          +        +T++F         A  V   + 
Sbjct: 54  DAQTVEQTTATPVEVQVNGTPGMTYMTSNSTNSGAMSLTVNFEVGTDINIAALDVQNRVG 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  + ++  L         ++L                        D +  ++  
Sbjct: 114 IAQPTLPQEVQRLGLTVRKRNPSILMLVALYSPNGTHDVTFLDNYTNVYIKDALLRAKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      +     P +L Q+  T  ++       N        G    +     +
Sbjct: 174 GDI-FTRADDFSMRVWLKPDKLAQMGVTAEEVRAAITEQNAQISAGTVGAPPQKTGQTYE 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +  K  +                    + I          +      +        + 
Sbjct: 233 YTIFVKGRL------------VTAEEFGNIIIKTRPDNGAVVYLKDVARVQLGKFSYSNN 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +     +  +       +   T E        L          +V   +V     S  
Sbjct: 281 SYVDGKRASYLLVYQAPGSNAIETAEAVYETMEQLSKTFPKDVAYVVPFESVSVIEVSIH 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV+IV+F+ +   +  ++   +I +++I T      LG T+   ++ G 
Sbjct: 341 EVVETLLEALVLVVIVVFLFLQSWRATIIPVLAIPVSIIATFIFFIPLGFTINTLTLFGF 400

Query: 421 VLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IG+ VD  I+V E ++        +   +           +    +      V + F
Sbjct: 401 VLAIGIVVDDAIVVVEAVQHNMDHEQMTPKEATYAAMKEISGPVMAIALILAAVFVPVGF 460

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + FAIT+ +S+LIS F A+S+  A+   I+R   +          FF    
Sbjct: 461 IPGIVGRLYQQFAITIAISVLISAFVALSLTPALCTLILRPMHLDKDSKGLNKFFFKFNV 520

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTH 567
                  R                I LL   
Sbjct: 521 WFGHVTSRYSLGVKKSIRWSRYVIILLLCIM 551



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 65/171 (38%), Gaps = 8/171 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAA 725
            K +    +S I + +++   ++ W      +  + I      L    L  I  N+ A   
Sbjct: 875  KTVYIFALSIIFVFLFLAALYESWSVPFSVLLAVPIGAFGAILTLTFLPAITNNVYAQIG 934

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++TLIG S  + +++ +  ++        +       ++    L   + TS+A  + ++P
Sbjct: 935  LITLIGLSAKNAILIVEFAKE---RVDRGMELVTATVEAAKLRLRPIIMTSLAFLLGIMP 991

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            + +    G     +    +  G+  A   +IFI   + + I        ++
Sbjct: 992  LVISSGAGAESRKTMGWTVLGGMFTATFLAIFIVPVLYVVITRLAYGKDKL 1042



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 55/130 (42%), Gaps = 8/130 (6%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            + AI    + I  T  FF   G   N   +   +  IG  V+D +VV + ++ NM    
Sbjct: 370 PVLAI---PVSIIATFIFFIPLGFTINTLTLFGFVLAIGIVVDDAIVVVEAVQHNMDHEQ 426

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAA 809
             ++ ++    ++ E  G  +  ++      +P+    G V      FAI +A  ++++A
Sbjct: 427 --MTPKEATYAAMKEISGPVMAIALILAAVFVPVGFIPGIVGRLYQQFAITIAISVLISA 484

Query: 810 SSSIFIAAPI 819
             ++ +   +
Sbjct: 485 FVALSLTPAL 494


>gi|146282527|ref|YP_001172680.1| AcrB/AcrD/AcrF family protein [Pseudomonas stutzeri A1501]
 gi|145570732|gb|ABP79838.1| AcrB/AcrD/AcrF family protein [Pseudomonas stutzeri A1501]
 gi|327480784|gb|AEA84094.1| AcrB/AcrD/AcrF family protein [Pseudomonas stutzeri DSM 4166]
          Length = 1034

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/497 (12%), Positives = 144/497 (28%), Gaps = 24/497 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +     +           Q   +I + F   R     A 
Sbjct: 47  VQASLPGASPEIMASSVATPLERSLGSIAGVSQMTSRSSQGSTRIIIQFDLDRDINGAAR 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    + L    +            + ++   ++   +    E           +
Sbjct: 107 DVQAAINASRNLLPSGMRSMPTYRKINPSQAPIMV-LSLTSEVLGKAELYDIGSTILAQK 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       +       L  +  E  P +L Q   +  ++       N  +   M      
Sbjct: 166 LSQVSGVGEIQVGGSSLPAVRVELQPQQLEQYGVSLDEVRQTIANGNVRRPKGMVED--- 222

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                                    AN         + +                 +   
Sbjct: 223 -----------------ADQHWQVRANDQLHQAADYMPLIIRYQDGAALRLGDVARVRDS 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +    +            I + +A  +   TIE        L+A         +      
Sbjct: 266 VEDRYNSGFFNNEQAVLLIVNRQAGANIIETIEGIRRELPALQAIMPGSVDLNIAMDRSP 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +    + T  I  GLV++++F+ +   +  L+   ++ ++++ T A++ L G +L 
Sbjct: 326 VIRATLHEAERTLLIAVGLVIVLVFLFLGRLRTALIPALAVPVSLVGTFAVMYLFGFSLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + S+  ++L  GL VD  I+V E I            +  +G      T+   N++ ++ 
Sbjct: 386 VLSLMALILAAGLVVDDAIVVLENIARHIDDGMPPLKAAYVGTREVGFTLLSMNLSLVVV 445

Query: 474 TVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            V + + GG      R F+IT+  +IL+S+  ++++   +    ++  + +         
Sbjct: 446 FVSILYMGGIVERLFREFSITLAAAILVSLLVSLTLTPMLCARWLKPHEPEKEGRLQRWS 505

Query: 531 FFLIPDCIAIQFMRARF 547
                  +        +
Sbjct: 506 HDAHQWLLRYYDRSLSW 522



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           R  ++ V +  + + +++    +   AL     + + +  T     LFG   N+ ++ A+
Sbjct: 336 RTLLIAVGLVIVLVFLFLG---RLRTALIPALAVPVSLVGTFAVMYLFGFSLNVLSLMAL 392

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +   G  V+D +VV + +    +     +           E     +  +++  +  + +
Sbjct: 393 ILAAGLVVDDAIVVLENI---ARHIDDGMPPLKAAYVGTREVGFTLLSMNLSLVVVFVSI 449

Query: 787 AVWGGSV---IGSFAIPMAFGI 805
              GG V      F+I +A  I
Sbjct: 450 LYMGGIVERLFREFSITLAAAI 471


>gi|240139069|ref|YP_002963544.1| multidrug efflux system, subunit C; RND efflux exporter
           [Methylobacterium extorquens AM1]
 gi|240009041|gb|ACS40267.1| multidrug efflux system, subunit C; RND efflux exporter
           [Methylobacterium extorquens AM1]
          Length = 1104

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/466 (12%), Positives = 137/466 (29%), Gaps = 28/466 (6%)

Query: 56  LVLEVDEDDFVNGFL-QMYSDELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           ++++          +    +  L      +        +      +I L F  +R  +  
Sbjct: 45  ILVQAQMAGASPETMATTVAAPLERRLGAIADVNEMTSTSSTGTVRIVLLFGLNRDIDGA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
           A  V   +    + L    + N          S +L    +        +          
Sbjct: 105 ARDVQAAINAARADLPTALRTNPTYRKFNPADSPILI-LGLTSDTLTPGQLYDSAATIVQ 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++   E           L  +  E DP+ L         +       N +         
Sbjct: 164 QRMSQIEGVGNVDIGGSSLPAVRVELDPTALFHYGIGLEGIRAGLASANANSP------- 216

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                            ++G       AN   +      DI                 + 
Sbjct: 217 -------------KGDIVAGDRRYQLYANDQGRQASDYRDIVVAYRNGAAVRLADVGEVV 263

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +    +  ++            +   +   T+E         +A         +    
Sbjct: 264 DSVEDKRNLGLVDGKPGVILFIYKEPGSNVVETVERVRAAIPQAKAALPGDIDLNISGDR 323

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S +  + T  I   LV+ V F+ +   +  L+   ++ +++I T A + +L  +
Sbjct: 324 SATIRASLASTEETLIIAVILVIFVTFIFLRSWRATLIPAVAVPISIIGTFAAMWMLDYS 383

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L + S+  +++  G  VD  I+V E I+      +    +  +G      T+   +++ +
Sbjct: 384 LDILSLMALIIATGFVVDDAIVVLENIQRHIEAGKPRVEAALLGAREVGFTVVSMSLSLI 443

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              + +   G   G   + FA+T+ ++IL+S+  +++    M   +
Sbjct: 444 AVFLPILLMGGIVGRLFQEFAVTLSMAILVSLVLSLTTTPMMCALL 489



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 69/209 (33%), Gaps = 7/209 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +  +          RV   + +    +     +  +      I   L       +I   
Sbjct: 284 FIYKEPGSNVVETVERVRAAIPQAKAALPGDIDLNISGDRSATIRASLASTEETLIIAVI 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + + +       W   L     + + I  T     +     ++ ++ A++   G+ V+D 
Sbjct: 344 LVIFVTFIFLRSWRATLIPAVAVPISIIGTFAAMWMLDYSLDILSLMALIIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +         +       E     V  S++     LP+ + GG V    
Sbjct: 404 IVVLENI---QRHIEAGKPRVEAALLGAREVGFTVVSMSLSLIAVFLPILLMGGIVGRLF 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             FA+ ++  I+V+   S+    P++  +
Sbjct: 461 QEFAVTLSMAILVSLVLSL-TTTPMMCAL 488



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 16/139 (11%)

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +GAI  L+             G EF + A+ AV  LIG    + +++ D         
Sbjct: 963  AGIGAIVALLT-----------TGTEFTIVALIAVFLLIGIVKKNAILMID--FAIDAER 1009

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVA 808
            +  ++  + I ++        + T++AA +   P+ V GG    +     I +  G++V+
Sbjct: 1010 SRGLTPGEAIYEACLLRFRPIMMTTLAAILGAAPLIVAGGEGAELRRPLGIAIVGGLIVS 1069

Query: 809  ASSSIFIAAPILLFIYDWR 827
               +++    + L++   R
Sbjct: 1070 QILTLYTTPVVYLYLDRLR 1088


>gi|212711841|ref|ZP_03319969.1| hypothetical protein PROVALCAL_02916 [Providencia alcalifaciens DSM
           30120]
 gi|212685363|gb|EEB44891.1| hypothetical protein PROVALCAL_02916 [Providencia alcalifaciens DSM
           30120]
          Length = 1028

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/669 (10%), Positives = 181/669 (27%), Gaps = 46/669 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++++  +   G+         Q  +   P                   +  +   
Sbjct: 12  RPIPTLVIFLALTVAGIFS-----FNQLPVTANPVINFPIVT---------VTITQDGSS 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +   S +        ++ +  +  T+ F  +       + +   +  +
Sbjct: 58  PTEMENAITKPVERAISGIPGIRHLTSTITEGISTTTVEFDLTIDAYIATNDIREQIAQI 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L     + L+     +  +I+    + +       + S  I      Q+ ++    +
Sbjct: 118 RSDLPQSIDEPLINRIDVEGGAILRYAVSSN--RQSIADLSWFIDDTVSKQLIMAPGVQK 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  E D ++L  L  + A ++      + +  G +               
Sbjct: 176 VSRLGGADSVVRIEPDANKLAALQLSIADINELLRSIHQNSSGGLSKY------------ 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                       +      + K    + +I       +        +I +          
Sbjct: 224 --------NDLQHTIRILGEKKDIDEIKNIQLPIGNQQWIKLGDIASIYQGQKATKTISQ 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L    +           S              L+     I + +V       +       
Sbjct: 276 LNGDDVVGFAVFRAKGSSDTAVANNVEYELDKLKLKHPDITIQLVSSTVKYTESSYYLTI 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +         ++IVLF  +   +  L+A  ++ L+++ T  +L++ G +L   ++  + L
Sbjct: 336 QTLLEGAFLTIIIVLF-FLKSWRATLIAAIALPLSILPTFFVLAIFGYSLNSITLLALTL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG+ VD  I+  E I++   + +  + +           I    +T +   + + F G 
Sbjct: 395 VIGILVDDAIVEIENIQKYIERGERPYLAALKASDAIGFAIVAITLTIIAVFLPVSFIGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     F IT+  ++L S+  A  +   M  +++   K +       +        + 
Sbjct: 455 FVGKYFVPFGITVSAAVLSSLLVARLVTPLMAAYLLLPTKKQQSKHVIPNWINRYIRLLM 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           +     +       I        + +              Q+ V       +   +  + 
Sbjct: 515 MTLKHRKIALSLAFIFLIGSISSIAYLPIGFMPNGDISVSQIDVELPPGTPVEETQKAVR 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           ++       +                    A        +  +T   P     + +    
Sbjct: 575 NMA------EKLKERTEVESIYTIAGISDDADGIAQHKGQIILTLTSPNEREMSQKQFEN 628

Query: 660 KISRELIRK 668
            I+  L + 
Sbjct: 629 SIAHFLQQT 637



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/246 (15%), Positives = 82/246 (33%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            + + L  + S  +  +      Q    +       + +     A    +E    K+   
Sbjct: 252 QQWIKLGDIASIYQGQKATKTISQLNGDDVVGFAVFRAKGSSDTAVANNVEYELDKLKLK 311

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
            P  TIQ                    +  + + ++I ++    W   L A   L L I 
Sbjct: 312 HPDITIQLVSSTVKYTESSYYLTIQTLLEGAFLTIIIVLFFLKSWRATLIAAIALPLSIL 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T    A+FG   N   + A+  +IG  V+D +V  + ++K ++              +I
Sbjct: 372 PTFFVLAIFGYSLNSITLLALTLVIGILVDDAIVEIENIQKYIERGERPYLAALKASDAI 431

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              +     T +A F+ V  +  + G     F I ++  ++ +   +  +   +  ++  
Sbjct: 432 GFAIVAITLTIIAVFLPVSFIGGFVGKYFVPFGITVSAAVLSSLLVARLVTPLMAAYLLL 491

Query: 826 WRAKNA 831
              K  
Sbjct: 492 PTKKQQ 497



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 80/219 (36%), Gaps = 7/219 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        D ++    LE V           +I+  E    +   ++  +    + 
Sbjct: 792  NRARKMSIEGNLDGLSLGEALESVTTLPEYQSLPKSIEPLEYGDMEFMLDMFERFSTTMF 851

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             S + +   + I FK +   +  +  L   I   +    L+G   +L  +  +L L+G  
Sbjct: 852  FSVLLVFAILIILFKDFMQPITILVALPFSIGGAIIALVLYGAMIDLPVIIGILMLMGIV 911

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG-- 791
              + +++ + + +      + ++ ++ I ++  E +   + T+ A    ++P+ +  G  
Sbjct: 912  TKNSILLVEFILE---KERSGLNRQEAIIEAGQERIRPIIMTTFAMIAGMVPLVLTTGAD 968

Query: 792  -SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                   AI +  G++ +   S+     I   + D + K
Sbjct: 969  AGFRAPMAIAVIGGLMSSTVLSLLFVPVIYSLMDDLKKK 1007


>gi|294663949|ref|ZP_06729373.1| RND superfamily protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292606280|gb|EFF49507.1| RND superfamily protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 1169

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 79/602 (13%), Positives = 168/602 (27%), Gaps = 52/602 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 30  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 75

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 76  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 135

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ K  +L+        I+        +  +    I                ++
Sbjct: 136 L--SLPLETKPPVLLRFNPSTEPIMRLALSPKQAPASDTDAIRQLTGLRRYADEDLKKKL 193

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 194 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDNVITRLKEENVNISGGRLEEGSQR 253

Query: 235 DSDGNQYLVEDKVEISGIHLNGATA-------------------------NFDPKTHKPV 269
                     D  EI  + +    +                             +     
Sbjct: 254 YLVRTVNQFVDLDEIRNMLVTTQRSSGSAAEAAMQQMYAIAASTGSQAALAAAAEVQSTS 313

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              S    G           + +          L      +     +   +   T     
Sbjct: 314 SSSSSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKEAVELAIYKEGDANTVSTAAALR 373

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 374 KRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 433

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +  SV 
Sbjct: 434 ISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLSVL 493

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
            +   G       +  S +T +   + L F     G   R  A+T+ ++I IS+  ++++
Sbjct: 494 DAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLVVSMTL 553

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           +  M+  +     M   D     ++      +       R  G  +   F   +  ++  
Sbjct: 554 IP-MLSSLKGAPPMAFPDEPSHPQWQPEQRWLKPVAAGRRGAGASVRYGFFGAAWAVVKV 612

Query: 567 HG 568
             
Sbjct: 613 WR 614



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 6/207 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           + + +++    +     I   E     I   +       VI 
Sbjct: 354 ELAIYKEGDANTVSTAAALRKRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIG 413

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 414 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVD 473

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +S  D       E     + +++      LP+       G 
Sbjct: 474 DSIVVLESI---AKARERGLSVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 530

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    A+ +A  I ++   S+ +   +
Sbjct: 531 LFRDQALTVAIAIAISLVVSMTLIPML 557



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +     D      V E+      + +      +  
Sbjct: 910  AAVAEVLATTGPSEIHRADQTRVAIVSASLKDIDLGGAVREVETMVRKDPLAAGVGMHIG 969

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 970  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 1028

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+G    + +++ D++    +L    +  R+ + +     L   + 
Sbjct: 1029 GKPISVVVFIGLILLVGLVTKNAIILIDKVN---QLREDGVPKREALIEGARSRLRPIIM 1085

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            T++      LP+AV    G  V    AI +  G
Sbjct: 1086 TTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1118


>gi|113868141|ref|YP_726630.1| cation/multidrug efflux pump [Ralstonia eutropha H16]
 gi|113526917|emb|CAJ93262.1| Cation/multidrug efflux pump [Ralstonia eutropha H16]
          Length = 1038

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 65/539 (12%), Positives = 144/539 (26%), Gaps = 24/539 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            + +L     D +   +    +   S +        +       I L F      ++   
Sbjct: 51  VNALLPGASPDTIASSVATPLEVQFSAIPGIAEMTSTSALGSVTIVLQFTLETRLDSAVQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +    S+L  D              S V     I        E S    R  + Q
Sbjct: 111 EVQAAINRATSRLPPDMPAMPTWRKVNPADSPVAI-LGITSDTLPLTEVSDYAERVLVRQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +G          +      +  +  P+ L  +  T A +       + +           
Sbjct: 170 LGQLPGVGLVNATGLRRPAIRVQASPAALAGVGLTLADVRGAIRAASRNAPKGALYGEAR 229

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +      + +                         ++          F      +   
Sbjct: 230 VSTLETNGQLLEP--------------------DDYRELVVAWRNGGPVFLKDVARVAVG 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                                 +   +   T +        LR          +      
Sbjct: 270 PEDAYVNGFPNGRPGVALAVMRQPGANIVQTFDRINEALPSLRRALPADVRVEILNDRTR 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  I   LV+ V+ + +      L+    + +++  T A + L+G +L 
Sbjct: 330 TIRASLHEVELTLLIAVMLVIGVMALFLREWSATLIVTAVLGVSLAATCAAMYLMGFSLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  +V+ +G  VD  I+V E I         +  +   G +    T+    ++ +  
Sbjct: 390 NLTLVAVVVAVGFIVDDAIVVVENIHRYRESGLGLREAARRGVAEVGPTVVSIGLSLVAV 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F     G   R FA+T  ++ILIS+  ++++  A+    +R     +        
Sbjct: 450 FIPLLFMSGVVGRLFREFALTSAMAILISVVVSLTLAPALAGIAMRKAHHDTGARQADLS 509

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            +L     A      R     +++        +     +  G          +  ++  
Sbjct: 510 TWLGQRYAAGLRWCLRRQARVLAVFGLTVCASVAGFVLIPKGFFPLQDTAFVLGTSQAA 568



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 76/231 (32%), Gaps = 6/231 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  +         F N        V  Q          R+ E +      +     +
Sbjct: 262 DVARVAVGPEDAYVNGFPNGRPGVALAVMRQPGANIVQTFDRINEALPSLRRALPADVRV 321

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +        I   L    +  +I   + + +      +W   L     L + +  T    
Sbjct: 322 EILNDRTRTIRASLHEVELTLLIAVMLVIGVMALFLREWSATLIVTAVLGVSLAATCAAM 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   N   + AV+  +G+ V+D +VV + +    +   + +  R+   + + E    
Sbjct: 382 YLMGFSLNNLTLVAVVVAVGFIVDDAIVVVENIH---RYRESGLGLREAARRGVAEVGPT 438

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V   ++     +P+    G V      FA+  A  I+++   S+ +A  +
Sbjct: 439 VVSIGLSLVAVFIPLLFMSGVVGRLFREFALTSAMAILISVVVSLTLAPAL 489



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/205 (16%), Positives = 84/205 (40%), Gaps = 6/205 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +  +++    I   + IQ T +   +  +E +      ++ + +A+ I + + ++   
Sbjct: 823  DAVARLEQVRQRIGMPAAIQGTFLGSAQAFQEALAGQPWLILAALLAVYIILGVLYESLA 882

Query: 693  -ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  ++TL       L    L G +F++ A+  V+ LIG    + +++ D         
Sbjct: 883  HPLTILSTLPSAAIGALALLWLGGFDFSIMALIGVILLIGIVKKNGILLID--FALAAQR 940

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
            T  IS    I ++    L   + T++AA +  +P+ +    G  +     + +  G++++
Sbjct: 941  TRGISAGQAIYEAALTRLRPIMMTTLAALLGAVPLMLGFGTGAELRQPLGVAVVGGLLLS 1000

Query: 809  ASSSIFIAAPILLFIYDWRAKNARI 833
             + ++F    + L +         +
Sbjct: 1001 QALTLFTTPVVYLALDRLSRYRRPL 1025


>gi|330890795|gb|EGH23456.1| acriflavin resistance protein [Pseudomonas syringae pv. mori str.
           301020]
          Length = 514

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/538 (10%), Positives = 145/538 (26%), Gaps = 38/538 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    I   GL+           +   P                    +     
Sbjct: 10  RPVATTLSMLAIVLAGLIA-----YTLLPVSALPQVDYPTIR---------VMTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +     + ITL F+     +    +V   +   
Sbjct: 56  PQVMTSSVTAPLERQFGQMPGLTQMASTSSGGASVITLRFSLEINMDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   I        + +  +  +   +I        
Sbjct: 116 TNLLPTDLPAPPVYNKVNLADTPVLT-LAITSKTMLLPKLNDLVDTRMAQKISQISGVGM 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L       + +       N ++    F              
Sbjct: 175 VSIAGGQRQAVRIKVNPEALAANSLNLSDVRTLIGASNVNQPKGNFDGP----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                      ++    N   K+ +   ++                 I            
Sbjct: 224 ---------TRVSMLDGNDQLKSPEEYANLILAYKDGAPLRLKDVAEIVDGAENERLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    L   +          +V          S +  
Sbjct: 275 ANRSQAVLLNIQRQPGANVIEVVDRIKALLPSITENLPAGLDVVVLTDRTQTIRASVTDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V F+ +      ++   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QHELLIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMLENISRHIEEGETPLQAALKGAKQIGLTLISLTLSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
             G   R FAIT+ ++ILIS+  ++++   M   +++ +  +              D 
Sbjct: 455 VVGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPKEEEQSRFYRASGAWIDW 512



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 59/160 (36%), Gaps = 6/160 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+      ++   +     + L +  T G   L G   N   + A+    G+
Sbjct: 339 LIAIILVVLVTFLFLRRFSATIIPSIAVPLSLVGTFGVMYLAGFSVNNLTLMAMTIATGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +V+ + +    +      +      K   +     +  +++    ++P+      
Sbjct: 399 VVDDAIVMLENI---SRHIEEGETPLQAALKGAKQIGLTLISLTLSLIAVLIPLLFMADV 455

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G +   FAI +A  I+++   S+ +   +   +     K
Sbjct: 456 VGRLFREFAITLAVAILISLVVSLTLTPMMCARLLKREPK 495


>gi|195940918|ref|ZP_03086300.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Escherichia
           coli O157:H7 str. EC4024]
          Length = 372

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 31/393 (7%), Positives = 86/393 (21%), Gaps = 29/393 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I   G L  L     +  + ++P+  P                     +
Sbjct: 8   RPIFAWVIAIIIMLAGGLAIL-----KLPVAQYPTIAPPAVT---------ISATYPGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +        +       +ITL+F      +    +V   LQ 
Sbjct: 54  AKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +         +++             + S  +     D I  +    
Sbjct: 114 AMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTNGTMTQEDISDYVGANMKDAISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DVQLFGSQ-YAMRIWMDPNKLNNFQLTPVDVINAIKAQNAQVAAGQLGGTPPVKGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  ++                +    +        +        +           
Sbjct: 233 SIIAQTRLTSAD-------------EFSKILLKVNQDGSQVRLRDVAKVELGGENYDVVA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T          +          +           S   
Sbjct: 280 KFNGKPASGLGIKLATGANALDTATAIRAELKKMEPFFPSGLKIVYPYDTTPFVKISIHE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
              T      LV +V+++ +   +  L+   ++
Sbjct: 340 VVKTLVEAIILVFLVMYLFLQNFRATLIPTIAV 372


>gi|268679612|ref|YP_003304043.1| acriflavin resistance protein [Sulfurospirillum deleyianum DSM
           6946]
 gi|268617643|gb|ACZ12008.1| acriflavin resistance protein [Sulfurospirillum deleyianum DSM
           6946]
          Length = 1009

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 82/670 (12%), Positives = 195/670 (29%), Gaps = 47/670 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++        GL+           ++ FP+                        +
Sbjct: 8   RPITTLMGVLTFIVFGLMS-----YNTMPINLFPNVDFPIVT---------VQTTYNGAD 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E  S +      + +  +  + +T+ F  ++  +   + V   +  +
Sbjct: 54  PSTVETKVTDKIEEAVSGVDGIDKLMSTSYEGFSVVTIQFELTKDLDEATNDVRDKIGAI 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N  L  +  K ++         I L   +  +     +  + E   +   Q+   +   +
Sbjct: 114 N--LPSEVDKPVVKKLGASGAVISLFIADKGEDSKALMRLADE---KLKSQLQRIKGVGE 168

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP  L +   +++ +S      N  +       +        +  
Sbjct: 169 VNIVGYQDREIRIFLDPFLLAKYALSSSDVSAIIAKQNIKQGAGKIINQNQEIIIKAEGD 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               VE  G  L                                   I   L+       
Sbjct: 229 -AKSVEAVGELLLKPGVM-----------------------LKDVATIYDGLSDAKSYSS 264

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         A  +    I         L+  +       V +      + + +  
Sbjct: 265 YNGARGVTLEVKKIAGENSLTIINEVKKALPKLQHLAGEHFEIKVLQDQSEKIMVNINNV 324

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +      A L ++++F  +      +V+  +I  +VI T A++  LG  L   ++ G+ L
Sbjct: 325 RFDLIFGAFLSIVIVFAFLRNVTATIVSALAIPTSVIGTFAIIDALGYDLNRLTLIGLTL 384

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG+ +D  I+V E I ++  +    F +   G      +I   +   L   + + F   
Sbjct: 385 AIGIFIDDAIVVIENIMKKMEEGMEPFQASFEGIKEVAFSILAISAVLLAVFIPVAFMDG 444

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FA+T+   I+IS   A+  + ++   +++ K+             +    +A
Sbjct: 445 IVGMFFNSFAMTVACGIVISYLVAVMFIPSVGARVLQAKESWFYHATEPILKAIDKSYVA 504

Query: 540 IQFMRARFWGVGISILF-SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           +     RF  V I      + +   L        +      Q+ + A   ++L  +++ +
Sbjct: 505 LLKPILRFKTVAIIATIGLLVASATLKVGMTFMPMQDNSEFQISIKAPVGINLESMKAKM 564

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           E +       +N     + +     +          L+ V  +      +      ++  
Sbjct: 565 EPIDALLKEDKNIVYSISTIGYNAAKEIHKGKFYVKLKPVVNREQTQEKIIQYYREKLKT 624

Query: 659 PKISRELIRK 668
                 L+ K
Sbjct: 625 FSDMTILVEK 634



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 67/207 (32%), Gaps = 6/207 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V+             V + + K          I+  +    KI   +       +  
Sbjct: 272 TLEVKKIAGENSLTIINEVKKALPKLQHLAGEHFEIKVLQDQSEKIMVNINNVRFDLIFG 331

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           + ++++I           + +   +   +  T       G + N   +  +   IG  ++
Sbjct: 332 AFLSIVIVFAFLRNVTATIVSALAIPTSVIGTFAIIDALGYDLNRLTLIGLTLAIGIFID 391

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-- 793
           D +VV + +   MK     +       + I E     +  S       +P+A   G V  
Sbjct: 392 DAIVVIENI---MKKMEEGMEPFQASFEGIKEVAFSILAISAVLLAVFIPVAFMDGIVGM 448

Query: 794 -IGSFAIPMAFGIVVAASSSIFIAAPI 819
              SFA+ +A GIV++   ++     +
Sbjct: 449 FFNSFAMTVACGIVISYLVAVMFIPSV 475



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 75/195 (38%), Gaps = 6/195 (3%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                 L      + +  +++ ++ +KI +I+P             +       G   V+
Sbjct: 784 DRERKVLVTANIFNTSLDKIVAIINEKIPDILPKGYSYRYTGDVENMEDTNKAFGA-AVL 842

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           ++ I + + +   ++        + ++ L  T  +    L G  F+L  +  V+ L+G  
Sbjct: 843 LAVILIYLILAALYESVIQPFIIMISMPLSFTGVMVALYLSGNSFSLFVMIGVILLLGMV 902

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
             + ++V D      +      S  + + ++  + L   + T+ A   +++P+A +G   
Sbjct: 903 GKNAILVVDFAN---RAIHEGKSIDEALLEAGEKRLRPILMTTFAMIGAMIPLA-FGSGA 958

Query: 794 IGSFAIPMAFGIVVA 808
              F  PMA  I+  
Sbjct: 959 GHEFNSPMALAIIGG 973


>gi|289665866|ref|ZP_06487447.1| RND superfamily protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1170

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/570 (12%), Positives = 158/570 (27%), Gaps = 51/570 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 31  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 76

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 77  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 136

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ K  +L+        I+        +  +    I            +   ++
Sbjct: 137 L--SLPLETKPPVLLRFNPSTEPIMRLALSTKQAPASDTDAIRQLTGLRRYADEELKKKL 194

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 195 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDNVITRLKEENVNISGGRLEEGAQR 254

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 255 YLVRTVNQFVDLDEIRNMLVTTQSSSSSAADAAMQQMYAIAASTGSQAALAAAAEVQSTS 314

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              S    G           + +          L      +     +   +   T     
Sbjct: 315 SSSSSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKEAVELAIYKEGDANTVSTAAALR 374

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 375 KRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 434

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +  SV 
Sbjct: 435 ISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLSVL 494

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
            +   G       +  S +T +   + L F     G   R  A+T+ ++I IS+  ++++
Sbjct: 495 DAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLVVSMTL 554

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +  +             + +          
Sbjct: 555 IPMLSSLKGAPPMAFPDEPSHPDWRPEQRW 584



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 6/207 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           + + +++    +     I   E     I   +       VI 
Sbjct: 355 ELAIYKEGDANTVSTAAALRKRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIG 414

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 415 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVD 474

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +S  D       E     + +++      LP+       G 
Sbjct: 475 DSIVVLESI---AKARERGLSVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 531

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    A+ +A  I ++   S+ +   +
Sbjct: 532 LFRDQALTVAIAIAISLVVSMTLIPML 558



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 75/213 (35%), Gaps = 8/213 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +     D      V E+      + +      +  
Sbjct: 911  AAVAEVLATTGPSEIHRADQTRVAIVSASLKDIDLGGAVREVETMVREDPLAAGVGMHIG 970

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 971  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 1029

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+G    + +++ D++    +L    +  R+ +       L   + 
Sbjct: 1030 GKPISVVVFIGLILLVGLVTKNAIILIDKVN---QLREDGMPKREALIDGARSRLRPIIM 1086

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            T++      LP+AV    G  V    AI +  G
Sbjct: 1087 TTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1119


>gi|300771085|ref|ZP_07080961.1| cation efflux protein [Sphingobacterium spiritivorum ATCC 33861]
 gi|300761755|gb|EFK58575.1| cation efflux protein [Sphingobacterium spiritivorum ATCC 33861]
          Length = 1065

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/535 (10%), Positives = 146/535 (27%), Gaps = 31/535 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++L+ ++   GL             +  P                    V    
Sbjct: 9   KRPSIIIVLFIILTLGGLFS-----YKLLSYELIPKFEINVIT---------VQTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S L+          +  + + ++  D+       +     +  
Sbjct: 55  SPSEVENTVSKKIEDAISSLENVKRVETKSYESLSLVMITLNDNADANYALNDAQRKINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D     LV  +  ++ I+              +      ++            
Sbjct: 115 ILKDLPDDVDPPSLVKFSLDDMPIMNLSVTSKLSEKELYDLLD---KKIQPIFSRINGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    DP ++     + A++    +  N                 GN  
Sbjct: 172 QVDMIGGQEREIKVTLDPKKMEGYGLSIAQVQQDILSSNLDFPT------------GNVK 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++ I       +  +            S  +            +I      V    
Sbjct: 220 TRSSQILIRLSGKYRSIEDMRNLPITAKASGSGGQSLDIPIRLGDIADIEDGQKEVEKIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L            ++  +     +     +  +           +V        L + +
Sbjct: 280 RLDQKNTILMQVKKQSDANAVEVSKLVKATIETVQNDYKDQDIKILVANDTSEYTLKAAN 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +++   +   +   V   +I L++I T   + L+G TL L S+ G+
Sbjct: 340 NVLFDLFLAIVLVGVIMLFFLHSLRDAAVVMVAIPLSLIATFIGIYLMGYTLNLMSLLGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I       +S   +   G +    T+    +  ++  + +   
Sbjct: 400 SLVVGILVDDAIVVVENIHRHMEMGKSKIRAAYDGAAEIGFTVTAITMVIVVVFLPIAMA 459

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            G      A    ++++I+   ++ +   ++ ++                  +I 
Sbjct: 460 SGLVANILAQ-FCVTVIIATGLSLLVSFTVVPWLYSRFGKLEHINPHTFFGKIIH 513



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 65/162 (40%), Gaps = 7/162 (4%)

Query: 672  GVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             ++ S I + L+ + +   +      I ++ L     L   AL     N+  +  ++ LI
Sbjct: 876  ALLASIILVYLVMVSLYDSFVTPFIVIFSVPLSFIGALLLMALTDTSLNIFTILGIIMLI 935

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G    + +++ D    NM+      +  D +  + +  L   + T++A    ++P+A+  
Sbjct: 936  GLVCKNAILLVD--FANMRK-DAGDNTHDALVAANHARLRPILMTTIAMVFGMVPIAIAT 992

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              G  +    AI +  G++ +   ++ I   +       + +
Sbjct: 993  GEGADMNRGLAIVIIGGLLSSLFLTLVIVPVVYSIFDSLQKR 1034



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 81/253 (32%), Gaps = 16/253 (6%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +      D+   +  +E +   D         K        +    V  T        
Sbjct: 258 IPIRLGDIADIEDGQKEVEKIARLDQKNTILMQVKKQSDANAVEVSKLVKATIETVQNDY 317

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
           K  +I  L     +E      +  L       + ++ + + + +         A   +  
Sbjct: 318 KDQDIKILVANDTSEYTLKAANNVLFD-----LFLAIVLVGVIMLFFLHSLRDAAVVMVA 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK--NMKLYTTSISF 757
           + L +  T     L G   NL ++  +  ++G  V+D +VV + + +   M       ++
Sbjct: 373 IPLSLIATFIGIYLMGYTLNLMSLLGLSLVVGILVDDAIVVVENIHRHMEMGKSKIRAAY 432

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +            T++   I V+ +       ++ +        +++A   S+ ++
Sbjct: 433 DGAAEIGFT-------VTAITMVIVVVFLPIAMASGLVANILAQFCVTVIIATGLSLLVS 485

Query: 817 APILLFIYDWRAK 829
             ++ ++Y    K
Sbjct: 486 FTVVPWLYSRFGK 498


>gi|163851943|ref|YP_001639986.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
 gi|163663548|gb|ABY30915.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
          Length = 1104

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 58/466 (12%), Positives = 137/466 (29%), Gaps = 28/466 (6%)

Query: 56  LVLEVDEDDFVNGFL-QMYSDELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           ++++          +    +  L      +        +      +I L F  +R  +  
Sbjct: 45  ILVQAQMAGASPETMATTVAAPLERRLGAIADVNEMTSTSSTGTVRIVLLFGLNRDIDGA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
           A  V   +    + L    + N          S +L    +        +          
Sbjct: 105 ARDVQAAINAARADLPTSLRTNPTYRKFNPADSPILI-LGLTSDTLTPGQLYDSAATIVQ 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++   E           L  +  E DP+ L         +       N +         
Sbjct: 164 QRMSQIEGVGNVDIGGSSLPAVRVELDPTALFHYGIGLEGIRAGLASANANSP------- 216

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                            ++G       AN   +      DI                 + 
Sbjct: 217 -------------KGDIVAGDRRYQLYANDQGRQASDYRDIVVAYRNGAAVRLADVGEVV 263

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +    +  ++            +   +   T+E         +A         +    
Sbjct: 264 DSVEDKRNLGLVDGKPGVILFIYKEPGSNVVETVERVRAAIPQAKAALPGDIDLNISGDR 323

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S +  + T  I   LV+ V F+ +   +  L+   ++ +++I T A + +L  +
Sbjct: 324 SATIRASLASTEETLIIAVILVIFVTFIFLRSWRATLIPAVAVPISIIGTFAAMWMLDYS 383

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L + S+  +++  G  VD  I+V E I+      +    +  +G      T+   +++ +
Sbjct: 384 LDILSLMALIIATGFVVDDAIVVLENIQRHIEAGKPRVEAALLGAREVGFTVVSMSLSLI 443

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              + +   G   G   + FA+T+ ++IL+S+  +++    M   +
Sbjct: 444 AVFLPILLMGGIVGRLFQEFAVTLSMAILVSLVLSLTTTPMMCALL 489



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 69/209 (33%), Gaps = 7/209 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +  +          RV   + +    +     +  +      I   L       +I   
Sbjct: 284 FIYKEPGSNVVETVERVRAAIPQAKAALPGDIDLNISGDRSATIRASLASTEETLIIAVI 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + + +       W   L     + + I  T     +     ++ ++ A++   G+ V+D 
Sbjct: 344 LVIFVTFIFLRSWRATLIPAVAVPISIIGTFAAMWMLDYSLDILSLMALIIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +         +       E     V  S++     LP+ + GG V    
Sbjct: 404 IVVLENI---QRHIEAGKPRVEAALLGAREVGFTVVSMSLSLIAVFLPILLMGGIVGRLF 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             FA+ ++  I+V+   S+    P++  +
Sbjct: 461 QEFAVTLSMAILVSLVLSL-TTTPMMCAL 488



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 16/139 (11%)

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +GAI  L+             G EF + A+ AV  LIG    + +++ D         
Sbjct: 963  AGIGAIVALLT-----------TGTEFTIVALIAVFLLIGIVKKNAILMID--FAIDAER 1009

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVA 808
            +  ++  + I ++        + T++AA +   P+ V GG    +     I +  G++V+
Sbjct: 1010 SRGLTPGEAIYEACLLRFRPIMMTTLAAILGAAPLIVAGGEGAELRRPLGIAIVGGLIVS 1069

Query: 809  ASSSIFIAAPILLFIYDWR 827
               +++    + L++   R
Sbjct: 1070 QILTLYTTPVVYLYLDRLR 1088


>gi|242309303|ref|ZP_04808458.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239524344|gb|EEQ64210.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 525

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 146/546 (26%), Positives = 274/546 (50%), Gaps = 36/546 (6%)

Query: 1   MRNN-PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+ +    +  + +    G+ +++P+               +  ++L          +L 
Sbjct: 1   MKKSFNSKLFFFIIAALFGIALSIPSIFQTQGPKITLGLDLQGGLNL----------LLG 50

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           V  ++ +       +  +  +  +E I +  +   ++ ++    DS  K  I + +    
Sbjct: 51  VKTEEAIKTRYSSLASGINFYALEEQILLDGLSAQEDSVSFELLDSNEKTKIDNYLKEI- 109

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                       + L V+    + +I  ++  I  + ++AIEQ++  IR R+DQ G+SE 
Sbjct: 110 ------------QGLNVSENNLKYTITFTEVEIINIENYAIEQAIGNIRNRLDQFGLSEP 157

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLL-----------GTTAKMSFHKVLPNNSKKGFMF 228
           ++ + G   IL+QLPG +     ++ L               +    +V      +   +
Sbjct: 158 SVTKQGEDSILVQLPGIKTQEEEQRALELISKGGHLQMMAVDEARNARVNTMTPLEAESY 217

Query: 229 GVRFLRD-SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
           G   L   ++ NQ ++   + I    +         +  +P+++ + +  G + F + + 
Sbjct: 218 GDVILPFVNNPNQKILLKAIPILDGAMLTDARAAYDQNGQPIINFTLNAQGGKIFGDFSG 277

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            N+G  +AVVLDG+V +APVI + I  G  QISG F+++ A  +A  LR+G+LP  + ++
Sbjct: 278 KNVGNRMAVVLDGKVYSAPVIRERIGGGSGQISGGFSVQEASDIAIALRSGALPAPITLL 337

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E+R+VG  LG+DSI     A+++G VL++ FMI  YG  G++A+ ++ +N++L +A+++L
Sbjct: 338 EKRSVGPSLGADSIKASMIALISGAVLVIAFMIFYYGIAGIIANLAMVVNILLVIAVMAL 397

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
             ATLTLP +AGI+L +G+AVD+N+++NERIRE  R  ++   S++ G++ A   IFDSN
Sbjct: 398 FSATLTLPGMAGIILTVGMAVDANVIINERIREGFRAGENFIKSMENGYANASRAIFDSN 457

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           +T+LIA V+L+  G GA++GFAITM + I+ S+ TAI     +   +             
Sbjct: 458 LTSLIAAVLLYMCGTGAIKGFAITMSIGIVASVITAIVGTHGIFRMLQNRIIKSGNYALW 517

Query: 528 LSRFFL 533
                 
Sbjct: 518 FGYKER 523



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 79/174 (45%), Gaps = 4/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I+  ++ +I  A+ ++ ++   +     + A   ++++I   +   ALF 
Sbjct: 341 SVGPSLGADSIKASMIALISGAVLVIAFMIFYYGI-AGIIANLAMVVNILLVIAVMALFS 399

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++ +R+R+  +      +F   ++            +
Sbjct: 400 ATLTLPGMAGIILTVGMAVDANVIINERIREGFRA---GENFIKSMENGYANASRAIFDS 456

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++ + I+ + + + G   I  FAI M+ GIV +  ++I     I   + +   K
Sbjct: 457 NLTSLIAAVLLYMCGTGAIKGFAITMSIGIVASVITAIVGTHGIFRMLQNRIIK 510


>gi|227540261|ref|ZP_03970310.1| acriflavin resistance protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227239905|gb|EEI89920.1| acriflavin resistance protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 1065

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/535 (10%), Positives = 147/535 (27%), Gaps = 31/535 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++L+ ++   GL             +  P                    V    
Sbjct: 9   KRPSIIIVLFIILTLGGLFS-----YKLLSYELIPKFEINVIT---------VQTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S L+          +  + + ++  D+       +     +  
Sbjct: 55  SPSEVENTVSKKIEDAISSLENVKRVETKSYESLSLVMITLNDNADANYALNDAQRKINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D     LV  +  ++ I+              +      ++            
Sbjct: 115 ILKDLPDDVDPPSLVKFSLDDMPIMNLSVTSKLSEKELYDLLD---KKIQPIFSRINGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    DP ++     + A++    +  N                 GN  
Sbjct: 172 QVDMIGGQEREIKVTLDPKKMEGYGLSIAQVQQDILSSNLDFPT------------GNVK 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++ I       +  +            S  +            +I      V    
Sbjct: 220 TRSSQILIRLSGKYRSIEDMRNLPITAKAAGSGGQSLDIPIRLGDIADIEDGQKEVEKIA 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L            ++  +     +     +  + +         +V        L + +
Sbjct: 280 RLDQKNTILMQVKKQSDANAVEVSKLVKANIETVQKDYKDQDIKILVANDTSEYTLKAAN 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +++   +   +   V   +I L++I T   + L+G TL L S+ G+
Sbjct: 340 NVLFDLFLAIVLVGVIMLFFLHSLRDAAVVMVAIPLSLIATFIGIYLMGYTLNLMSLLGL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I       +S   +   G +    T+    +  ++  + +   
Sbjct: 400 SLVVGILVDDAIVVVENIHRHMEMGKSKIRAAYDGAAEIGFTVTAITMVIVVVFLPIAMA 459

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            G      A    ++++I+   ++ +   ++ ++                  +I 
Sbjct: 460 SGLVANILAQ-FCVTVIIATGLSLLVSFTVVPWLYSRFGKLEHINPHTFFGKIIH 513



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 65/162 (40%), Gaps = 7/162 (4%)

Query: 672  GVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             ++ S I + L+ + +   +      I ++ L     L   AL     N+  +  ++ LI
Sbjct: 876  ALLASIILVYLVMVSLYDSFVTPFIVIFSVPLSFIGALLLMALTDTSLNIFTILGIIMLI 935

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G    + +++ D    NM+      +  D +  + +  L   + T++A    ++P+A+  
Sbjct: 936  GLVCKNAILLVD--FANMRK-DAGDNTHDALVAANHARLRPILMTTIAMVFGMVPIAIAT 992

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              G  +    AI +  G++ +   ++ I   +       + +
Sbjct: 993  GEGADMNRGLAIVIIGGLLSSLFLTLVIVPVVYSIFDSLQKR 1034



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 80/253 (31%), Gaps = 16/253 (6%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +      D+   +  +E +   D         K        +    V           
Sbjct: 258 IPIRLGDIADIEDGQKEVEKIARLDQKNTILMQVKKQSDANAVEVSKLVKANIETVQKDY 317

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
           K  +I  L     +E      +  L       + ++ + + + +         A   +  
Sbjct: 318 KDQDIKILVANDTSEYTLKAANNVLFD-----LFLAIVLVGVIMLFFLHSLRDAAVVMVA 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK--NMKLYTTSISF 757
           + L +  T     L G   NL ++  +  ++G  V+D +VV + + +   M       ++
Sbjct: 373 IPLSLIATFIGIYLMGYTLNLMSLLGLSLVVGILVDDAIVVVENIHRHMEMGKSKIRAAY 432

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +            T++   I V+ +       ++ +        +++A   S+ ++
Sbjct: 433 DGAAEIGFT-------VTAITMVIVVVFLPIAMASGLVANILAQFCVTVIIATGLSLLVS 485

Query: 817 APILLFIYDWRAK 829
             ++ ++Y    K
Sbjct: 486 FTVVPWLYSRFGK 498



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 63/512 (12%), Positives = 143/512 (27%), Gaps = 34/512 (6%)

Query: 8    VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
            ++L   +  +GL+ A                + +  ++   D    S   +    + +++
Sbjct: 546  IVLIVFVASLGLVGAGYIGGEFFPSSDKGEFLVQLELNK--DASIESSNFMTQRAEAYIS 603

Query: 68   --GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                ++     +       G    +  + + +I +   D + +          L+    K
Sbjct: 604  KFKEVKRTITTVGQSSDGMG--GTTGTKYKAEIHVILIDQKERTESTKVFGAKLKRGLEK 661

Query: 126  LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
              V  K   +           ++   I   +  A+E + +   Q     G +E  +    
Sbjct: 662  ELVGSKVKTVTVGMMGAEQAPITMTVIGSDMKDALEFANKAADQLRKIEGATEVKLTSED 721

Query: 186  SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
             +    ++  + D  ++  L    + +        +      F           ++  ED
Sbjct: 722  GN---PEINVQVDRDKMNSLGLGLSTVGMAMQTAFSGNTDGKFRAGEYEYDINIRFGEED 778

Query: 246  KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
            +  I  +       N   K             G        +                 +
Sbjct: 779  RKNIEDVRNLLFINNMGQKIRLEQFATISYSSGPTLLERRDKS---------------PS 823

Query: 306  PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
              I   +    +             L        +       ++                
Sbjct: 824  VSIQAQVIGRPSGTIAAEWETQFKELPRKPGVSYMWGGDMENQQE-------GFGTLGFA 876

Query: 366  CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
                  LV +V+  +        +  FS+ L+ I  L L++L   +L + +I GI++ IG
Sbjct: 877  LLASIILVYLVMVSLYDSFVTPFIVIFSVPLSFIGALLLMALTDTSLNIFTILGIIMLIG 936

Query: 426  LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
            L   + IL+ +          +   +L          I  + I  +   V +      G 
Sbjct: 937  LVCKNAILLVDFANMRKDAGDNTHDALVAANHARLRPILMTTIAMVFGMVPIAIATGEGA 996

Query: 483  GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               RG AI +   +L S+F  + IV  +    
Sbjct: 997  DMNRGLAIVIIGGLLSSLFLTLVIVPVVYSIF 1028


>gi|91778118|ref|YP_553326.1| AcrB/AcrD/AcrF family cation efflux protein [Burkholderia
           xenovorans LB400]
 gi|91690778|gb|ABE33976.1| cation/multidrug efflux pump, AcrB/AcrD/AcrFfamily, RND superfamily
           [Burkholderia xenovorans LB400]
          Length = 1041

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 70/550 (12%), Positives = 156/550 (28%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +  +GL+      +       +P+                         
Sbjct: 10  RPVATSLLMVALVLVGLVAMRFLPVSSLPDVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +      V    +  + ITL F  S   +     V   +   
Sbjct: 56  PNVMATTVTAPLEVQLGEIPGLQQMVSYSSEGASVITLQFDLSLNLDIAEQNVQQAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NS L                   +L+   +        +       +   +I        
Sbjct: 116 NSFLPTGLPAPPTYAKVNPADQPILT-LAVTSKSMSLTQLQDTANNRLATKISEVPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +   +  +  E DP +L         +       N S+    F    L  +      
Sbjct: 175 VTTAGGNVPAVRVEADPQKLAAYGLNLDDLRTLLANVNVSQPKGNFDGPELDYTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D                     +  +D           +      + +    V  G  
Sbjct: 235 IVDP--------------------QDYLDSVIAYQNGAPVYLRDVARVSQAAQDVERGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T+         L +         V     G    S S  
Sbjct: 275 YNRTPAIVLNVQRQPGANVIATVNQIMKQLPALESTLPAGLQVTVVANTTGVIRSSVSDA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   LV++V+F+ +      ++   S+ +++I TLA++  L  ++   S+  +++
Sbjct: 335 AFELVLAVVLVVLVIFVFLRNVPATIIPSISVPVSLIGTLAVMYQLNYSIDNLSLMALII 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD +I++ E I     + ++   +   G  +   TI    ++ +   + L F GG
Sbjct: 395 ATGFVVDDSIVMIENIVRYLEEGKTPLEAALEGAGQIGFTILSLTVSLIAVLIPLLFMGG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              R    FAIT+ ++I+IS   ++++V  +   ++R +  +           L    +A
Sbjct: 455 VIGRLFSEFAITLAVTIVISAVVSLTVVPMLCARLLRAQAQRHPSRFERFSEGLFDRTLA 514

Query: 540 IQFMRARFWG 549
                  +  
Sbjct: 515 AYERGLNWVL 524



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 58/140 (41%), Gaps = 6/140 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +    ++ + +  TL          +  ++ A++   G+ V+D +V+ + +   ++    
Sbjct: 360 IIPSISVPVSLIGTLAVMYQLNYSIDNLSLMALIIATGFVVDDSIVMIENI---VRYLEE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAAS 810
             +  +   +   +     +  +++    ++P+   GG +      FAI +A  IV++A 
Sbjct: 417 GKTPLEAALEGAGQIGFTILSLTVSLIAVLIPLLFMGGVIGRLFSEFAITLAVTIVISAV 476

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            S+ +   +   +   +A+ 
Sbjct: 477 VSLTVVPMLCARLLRAQAQR 496



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 83/215 (38%), Gaps = 6/215 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + +      + +  +  ++     +    +I  +     +   + +   +  +I + +
Sbjct: 809  VTISFNLAQDASLSAAVAQIRDAERAVQLPPSITTSFQGAAQAFEDSLSSEVYLLIAALV 868

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            A+ I + + ++ +   +  ++TL       L    + G + ++  +  ++ LIG    + 
Sbjct: 869  AVYIVLGVLYESYIHPVTILSTLPSAGIGALLALMIAGSDLDVIGIIGIVLLIGIVKKNA 928

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +           R+ I ++        + T++AA +  LPM +    G  + 
Sbjct: 929  IMMVDFALE--AERVHGKPAREAIFEASLLRFRPILMTTLAAMLGALPMLLGTGTGSELR 986

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                + +  G++V+   ++F    I LF      +
Sbjct: 987  RPLGLAIIGGLMVSQVLTLFTTPVIYLFFDRLAQR 1021


>gi|254485716|ref|ZP_05098921.1| RND transporter, HAE1/HME family, permease protein [Roseobacter sp.
           GAI101]
 gi|214042585|gb|EEB83223.1| RND transporter, HAE1/HME family, permease protein [Roseobacter sp.
           GAI101]
          Length = 1029

 Score =  145 bits (366), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 74/626 (11%), Positives = 170/626 (27%), Gaps = 47/626 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L ++I   G+       + +      P                         
Sbjct: 14  RRPILAFVLNALIVLAGVAALFGAEIRELPNVDRPVVTITTP--------------FPGA 59

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  L    +     +        + R  ++++T+ F D+   +  A  V   +  
Sbjct: 60  SPEAVDQELTGRIEGAVGRVSGVRSISSNSRFGRSRVTVEFNDNVDIDVAATDVRDAVGR 119

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D  +  +V        ++              E +  +  +  D++   +   
Sbjct: 120 IVNDLPEDADQPQIVKADANAQPVMRIAVTSA--RRSPQELTAIVQDRVEDRLISVDGVA 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + +   L     T   M                       +     
Sbjct: 178 DLQIYGDREPIFRVDINQLELASRGLTLGDMQRALSSVAFDSPAGDLAGDRQSINVRTTA 237

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                          VD                  +    A      
Sbjct: 238 SV------------------------ATVDAFEALEIMPDVTVGDVAQVTLGPATGETAL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                +        +A  +          + A L           V   +     GS   
Sbjct: 274 RANGQLGLGIGVIRQATSNTLEISTNVREVVADLGRTLPDDVTIAVTSDDAVFISGSIDE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      +V+ V+F+ +   +  L+   ++ + ++ TLA + L+G ++ + ++  +V
Sbjct: 334 VIKSLGFAIAIVVAVIFLFLRDVRATLIPALTLPVALVGTLAAIYLVGFSINILTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  G+ VD  I+V E I  +         +   G ++ +  +  +  T     V L F  
Sbjct: 394 LATGMVVDDAIVVLENIVRQRALGMGPRAAAVNGTAQVFFAVITTTATLAAVFVPLSFLP 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG  R F  T+ +++L+S   A+S+   +   ++  K  ++     +     +    
Sbjct: 454 GQAGGLFREFGFTLAMAVLLSSVVALSLCPVLASRLLTKKPKENPRGPMIWLGNRLLGVY 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFT----HGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 A      I ++    +   +             + +    L V A + V L   
Sbjct: 514 ESTLKGALAMPFVIVLVSVFVAATAIMMTNGIRQELTPPEDRAVALLRVTAPQGVSLEYT 573

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVR 620
           +S +  ++      Q+     N    
Sbjct: 574 QSKMREIEDVVAPLQDNGEITNVFSI 599



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 81/253 (32%), Gaps = 7/253 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V +  V         G+ + +        +  ++    +++  +  +  V   +
Sbjct: 248 LEIMPDVTVGDVAQVTLGPATGETALRANGQLGLGIGVIRQATSNTLEISTNVREVVADL 307

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLI 701
              +P                  I + I  +  +   ++  I          L    TL 
Sbjct: 308 GRTLPDDVTIAVTSDDAVFISGSIDEVIKSLGFAIAIVVAVIFLFLRDVRATLIPALTLP 367

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  TL    L G   N+  + A++   G  V+D +VV + +   ++     +  R   
Sbjct: 368 VALVGTLAAIYLVGFSINILTLLALVLATGMVVDDAIVVLENI---VRQRALGMGPRAAA 424

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                +     + T+       +P++      G +   F   +A  +++++  ++ +   
Sbjct: 425 VNGTAQVFFAVITTTATLAAVFVPLSFLPGQAGGLFREFGFTLAMAVLLSSVVALSLCPV 484

Query: 819 ILLFIYDWRAKNA 831
           +   +   + K  
Sbjct: 485 LASRLLTKKPKEN 497



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 62/166 (37%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++    + + + + +  +F+ +  A+  + T+ L +   +    L G   N+ +   ++ 
Sbjct: 851  VITFGFAILVVFLVLAAQFESFISAVIVMATVPLGLACAVFALLLTGQSLNVYSQIGLVI 910

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +L       +  I  +    L   + T  +  +  +P+ +
Sbjct: 911  LIGIMAKNGILIVEFAN---QLRDKGQDVQSAIKDACIIRLRPVMMTMTSTVLGGVPLVL 967

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                G     +    +  G+ +A   ++++       +  +    A
Sbjct: 968  STGAGAEAREALGWVIVGGLGLATLFTLYLTPVAYALLARFSTPKA 1013


>gi|260774510|ref|ZP_05883424.1| RND multidrug efflux transporter [Vibrio metschnikovii CIP 69.14]
 gi|260610637|gb|EEX35842.1| RND multidrug efflux transporter [Vibrio metschnikovii CIP 69.14]
          Length = 1041

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 67/532 (12%), Positives = 161/532 (30%), Gaps = 39/532 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIALLGLQAMF-----KMQVSEYPEMTNTVIT---------VSTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +                +KIT+    +         +      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDYMTSQSVLGSSKITVYMKLNTDPNAALADILAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      +++   + + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPSVSMSTGSTTAVLYLGFTSNEL--DSSQITDYLQRVINPQLYAINGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++     T   +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAAFNLTAKDVMGVLSANNYQSATGQITGEFVLFNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+  + +   ++N         V ++      R         +           
Sbjct: 233 QVSSVEELKNLVVKTDSSNIIRLADIAKVSLAKSHDSYRASANGQEAVV----------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L           V   +  A   S   
Sbjct: 282 ---------AAINAAPSANPINIAKDVLDVLPELERNMPSTIKMNVMYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  ++   +I L++I    ++  +G +  L ++  +V
Sbjct: 333 VIKTIIEAALIVLVVITLFLGSLRAVIIPIITIPLSLIGVAMVMQAMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I    ++ +S F +  +G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVLENIDRHIKEGESPFRAAIIGTREIAVPVISMTLTLGAVYAPIALMG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           G      + FA+T+  ++ +S   A+++   M   +++  ++ S     +  
Sbjct: 453 GITGALFKEFALTLAGAVFVSGIIALTLSPMMCSKMLKANEIPSKFEQTVHH 504



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 88/257 (34%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +   ++  + L+ +     +             E            + +   + +  V 
Sbjct: 244 VVKTDSSNIIRLADIAKVSLAKSHDSYRASANGQEAVVAAINAAPSANPINIAKDVLDVL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++   +P +   N          E I + I  +I +A+ +L+ I +        +  I 
Sbjct: 304 PELERNMPSTIKMNVMYDSTVAINESIHEVIKTIIEAALIVLVVITLFLGSLRAVIIPII 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +          G  +NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSLIGVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENI---DRHIKEGESPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  ++       P+A+ G   G++   FA+ +A  + V+   ++ +
Sbjct: 421 RAAIIGTREIAVPVISMTLTLGAVYAPIALMGGITGALFKEFALTLAGAVFVSGIIALTL 480

Query: 816 AAPILLFIYDWRAKNAR 832
           +  +   +       ++
Sbjct: 481 SPMMCSKMLKANEIPSK 497



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 79/791 (9%), Positives = 220/791 (27%), Gaps = 36/791 (4%)

Query: 66   VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                     +EL++ +        ++ ++ +   +S A S      +      +    + 
Sbjct: 229  SADTQVSSVEELKNLV--VKTDSSNIIRLADIAKVSLAKSHDSYRASANGQEAVVAAINA 286

Query: 126  LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                   N+     +    +   + S   ++ +    +  +    E+I+  I+   I   
Sbjct: 287  APSANPINIAKDVLDVLPELERNMPSTIKMNVMYDSTVAINESIHEVIKTIIEAALIVLV 346

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 347  VITLFLGSLRAVIIPIITIPLSLIGVAMVMQAMGFSW--NLMTLLAMVLAIGLVVDDAIV 404

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 D+    G     A      +   PV+ ++           +     G        
Sbjct: 405  VLENIDRHIKEGESPFRAAIIGTREIAVPVISMTLTLGAVYAPIALMGGITGALFKEFAL 464

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                 A  +  +            +              ++   L+ + +R         
Sbjct: 465  ---TLAGAVFVSGIIALTLSPMMCSKMLKANEIPSKFEQTVHHLLDKLTQRYDRMLQAVM 521

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   A    +   +  +          ++    + ++ T    + L           
Sbjct: 522  LHRPVVIAFAIIVFASLPVLFKFIPSELAPSEDKGVIMLLGTGQSNANLDYLSNTMHEVN 581

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
             +L     V    +              S+F   +   S+A  T    ++   I  + + 
Sbjct: 582  KILSDQPEVQFAQVFTGVPNSNQAFGIASMFPWSERQASQAEVTKRVGHLVQDIPGMAVT 641

Query: 479  FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
             F    + G    + +  +I+   A   +  +   ++   K   + I            +
Sbjct: 642  AFQMPELPGAGSGLPIQFVITTPNAFESLFTIASDVLTQVKASPLFIYSDLDLNYDSATM 701

Query: 539  AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI---QLGVLANRPVDLSVVR 595
             I   + +    G+++     ++  +   G    ID  G        V     ++   ++
Sbjct: 702  KINIDKDKAGAYGVTMQDIGMTLGTMMADGYVNRIDLDGRSYEVIPQVERKYRLNPESMK 761

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
            +       G++         + +   +  P  +   +  +  V    T +          
Sbjct: 762  NYFVRASDGNMIPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAIAWFENI 821

Query: 652  --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                     + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 822  AETQLPKGYSHDYMGEARQYVTEGSALYVTFGLALAIIFLVLAIQFESIRDPLVIMVSVP 881

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   A      N+ +   ++TL+G     ++++ +  ++        +S  D +
Sbjct: 882  LAICGALIALAWGASTMNIYSQVGLITLVGLITKHEILICEVAKEE--QLHNKLSRIDAV 939

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +    L   + T+ A    ++P+      G +   S  I +  G+ +    ++F+   
Sbjct: 940  MAAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVAGLSIGTLFTLFVLPV 999

Query: 819  ILLFIYDWRAK 829
            I  ++ +    
Sbjct: 1000 IYSYLAEKHKP 1010


>gi|320322851|gb|EFW78942.1| RND efflux transporter [Pseudomonas syringae pv. glycinea str.
           B076]
          Length = 1034

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/502 (13%), Positives = 139/502 (27%), Gaps = 41/502 (8%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ----MYSDELRSFLK 82
            P+  +   P A                 + +           +        +   S + 
Sbjct: 33  FPRLPIAPLPEAEFPT-------------IQVTAQLPGASPETMAPSVATPLEVQFSAIP 79

Query: 83  KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                  S       +TL F  ++  +  A +V   +     +L  D             
Sbjct: 80  GMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADMPSLPTWRKVNPA 139

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
            S VL   ++   +    E S         Q+   E   Q   + +    +  +  P +L
Sbjct: 140 DSPVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKL 198

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
             L  T A +                              +          ++  ++N  
Sbjct: 199 AALGLTLADIRLAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQ 238

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    +                 +                         +   +  
Sbjct: 239 LFKPQDYAQLIVSYKNGAPVQLKDVAWVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIV 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T++        L+          V          S    + T  I   LV+ V+ + + 
Sbjct: 299 DTVDRIQRELPRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLR 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
                L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I    
Sbjct: 359 QLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHL 418

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILIS 499
              Q +  +   G      T+   + + + A + L F G   G   + FA+T   +ILIS
Sbjct: 419 EAGQGMREAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILIS 478

Query: 500 MFTAISIVRAMMIFIIRYKKMK 521
           +  ++++   +    +R     
Sbjct: 479 VVVSLTLAPTLAALFMRAPTHN 500



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVAWVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 79/202 (39%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   ++I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVSMLDQAKKEIGMPASIIGSFQGAAQAFQTSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  ++ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGIVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               +S ++ I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLSPQEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     K 
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHKR 1021


>gi|240849806|ref|YP_002971194.1| acriflavin resistance protein D [Bartonella grahamii as4aup]
 gi|240266929|gb|ACS50517.1| acriflavin resistance protein D [Bartonella grahamii as4aup]
          Length = 1044

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/516 (12%), Positives = 151/516 (29%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +L +MI   G   A  N   + + D          +  G              
Sbjct: 25  RRPVFTFVLNAMIIIAG-FAAWLNVDVRELPDVDTPVTTVVTMFSG-------------A 70

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  S +        +    ++++ ++F         A  +   L  
Sbjct: 71  SAETIDREVTKVIEDAVSRVSGVKTISSTSSFGRSRVQINFNVGVDLNVAASDIRDALSR 130

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +    L++       +++        +     + +  +  Q +D I   +   
Sbjct: 131 IAYSLPKNADTPLIIKADSNAAAMMYLVVTSPTMSID--DLTTIVNDQIVDAISAVDGVG 188

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +         + D ++L     T A +S                            
Sbjct: 189 DVQVASARTKIFQIDIDQAKLASYGLTVADISRVLADMTTDVPVGSLRNSKQTLVVRATA 248

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +        + L                                  ++     +     
Sbjct: 249 RLTTPESFEQVVLKPH------------------------VHLGDVAHVTLSPDIETVIL 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            KAQ +     +    +   L++         V   +      +   
Sbjct: 285 RINGKTGIGLGIVRKAQSNTLNISQGVRAVVDNLKSTVPSSVHIDVINDDAIFIKSALHE 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I    V++V+F+ +   +  L+   S+ + +I T+A + L+G +L + ++ G+V
Sbjct: 345 VEVALVIAILSVILVIFLFLRDIRVTLIPALSLPVALIGTIAAIYLVGFSLNILTLLGLV 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G    +  +  + +T +   V + F  
Sbjct: 405 LATGLVVDDAIVVLENIVRWRNMGLGSRAAAVLGTREVFFAVVATTLTLVAVFVPISFLP 464

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F   + +SIL+S   A+++   +    
Sbjct: 465 GQVGALFREFGFVLAISILLSSIVALTLCPMLASRF 500



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 88/242 (36%), Gaps = 7/242 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+    V L  V     S  I  +  +        L  ++    +++  ++ +  V   
Sbjct: 258 QVVLKPHVHLGDVAHVTLSPDIETVILRINGKTGIGLGIVRKAQSNTLNISQGVRAVVDN 317

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTL 700
           +   VP S   +         +  + +  V ++I+ +++++ I          L    +L
Sbjct: 318 LKSTVPSSVHIDVINDDAIFIKSALHEVEVALVIAILSVILVIFLFLRDIRVTLIPALSL 377

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L G   N+  +  ++   G  V+D +VV + +   ++     +  R  
Sbjct: 378 PVALIGTIAAIYLVGFSLNILTLLGLVLATGLVVDDAIVVLENI---VRWRNMGLGSRAA 434

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
                 E     V T++      +P++   G V      F   +A  I++++  ++ +  
Sbjct: 435 AVLGTREVFFAVVATTLTLVAVFVPISFLPGQVGALFREFGFVLAISILLSSIVALTLCP 494

Query: 818 PI 819
            +
Sbjct: 495 ML 496



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 59/146 (40%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ L I   +    L G+  N+ +   ++ LIG    + +++ +      
Sbjct: 888  SFISGFIIMATVPLGIGCAVIAMLLSGVSLNIYSQIGLILLIGVMAKNGILIVEFA---D 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +L     S R+ ++++ N  L     T + A +  +P+ +    G     +    +  G+
Sbjct: 945  QLRDQGRSVREAVEEAANIRLRPVCMTMICAILGGIPLVLAKGAGAEARIALGWVIVGGL 1004

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
             +A   ++++   + LF+  +    A
Sbjct: 1005 GLATIFTLYVTPVVYLFLGRFIRPKA 1030


>gi|167770188|ref|ZP_02442241.1| hypothetical protein ANACOL_01531 [Anaerotruncus colihominis DSM
           17241]
 gi|167667510|gb|EDS11640.1| hypothetical protein ANACOL_01531 [Anaerotruncus colihominis DSM
           17241]
          Length = 1027

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 81/614 (13%), Positives = 175/614 (28%), Gaps = 43/614 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    +V++   +   G        L        P  +                     
Sbjct: 8   LKRPVSMVMIILALIVFGFSAITGAPLELMPEMEMPVLL--------------VMTTYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    +   S L          +   + + L        +     +   L 
Sbjct: 54  AGPQEVEDLVTSQLESSVSTLNGIKTIQSVSQDSVSLMVLQLEYGTNMDVAHMDLQEKLN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             +  L  D +  +++          +S   +    +  I+    I  +   +       
Sbjct: 114 MYSGALPDDAQDPIIIEMDLNS----MSAITLSARATGDIDLLSYIDEEIKPEFEKLGGV 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  E D  RL+Q     + +       + S                  
Sbjct: 170 ASVDVSGGQENYISVELDEQRLKQYGLDMSTIVSFIGAADFSIPVGD------------- 216

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G             T + + +I       +        +I    A     
Sbjct: 217 -------IDRGDQSLSLRGGVSYDTVESLGNIPITLRSGQVIHLSDVAHIYDATADADSI 269

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +         E        + A ++ ++L  V      +   S +
Sbjct: 270 SRYNGNETVSLGIKKRQSAGTIEVTEAVVKTMEQINARNMGVEL-SVINDTSDSIRSSVN 328

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      L +IVLF+     K  L+   SI ++V+ TL L++  G +  + S+ G+
Sbjct: 329 SVIKTLISAIILCMIVLFIFFGDWKASLIVGSSIPVSVLTTLILMNAFGFSFNIVSLGGL 388

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           V+G+G+ VD++I+V E   +   +N +   +   G     S++  S +T ++  + +   
Sbjct: 389 VIGVGMMVDNSIVVLESCFQRRERNLTFRDAAIEGARIVTSSVAASTLTTVVVFLPISIM 448

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-KKMKSIDINPLSRFFLIPD 536
               G   R    T+  S+  S+ +A++IV  +   +    K+   ++           +
Sbjct: 449 EGLSGQMFRQLGFTIVFSLTASLISALTIVPLLFYRLAPKEKEDSHVNRVLNKITIAYGN 508

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +   F       +    L     + L F H        +G I + V     + L  V +
Sbjct: 509 FLKKTFRHKLLVVLISVGLLVGSFMLLPFIHFQLMPDIDQGTISISVETKPGLKLEKVDA 568

Query: 597 NLESLQIGDISFQN 610
            +  L+       +
Sbjct: 569 LMTQLESMVQESTD 582



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 99/259 (38%), Gaps = 8/259 (3%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I + + + + + LS V    ++    D   +    E   L   + Q   ++  T  + 
Sbjct: 239 GNIPITLRSGQVIHLSDVAHIYDATADADSISRYNGNETVSLGIKKRQSAGTIEVTEAVV 298

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALG 695
              ++I        +         I   +    I  +I + I  +I ++I F  W  +L 
Sbjct: 299 KTMEQINARNMGVELSVINDTSDSIRSSV-NSVIKTLISAIILCMIVLFIFFGDWKASLI 357

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             +++ + +  TL     FG  FN+ ++  ++  +G  V++ +VV +      +    ++
Sbjct: 358 VGSSIPVSVLTTLILMNAFGFSFNIVSLGGLVIGVGMMVDNSIVVLESC---FQRRERNL 414

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
           +FRD   +           +++   +  LP+++     G +       + F +  +  S+
Sbjct: 415 TFRDAAIEGARIVTSSVAASTLTTVVVFLPISIMEGLSGQMFRQLGFTIVFSLTASLISA 474

Query: 813 IFIAAPILLFIYDWRAKNA 831
           + I   +   +     +++
Sbjct: 475 LTIVPLLFYRLAPKEKEDS 493



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/209 (12%), Positives = 79/209 (37%), Gaps = 8/209 (3%)

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +      + Q+   + N  +        + +     E +K+ + E+     +  T+    
Sbjct: 773 ASIEYSNAPQSIQRKNNQYIVTISGQPTTASALTAGEEIKQAVAELELPEGVAVTQNQAD 832

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEF 718
           +   E        +  +   + + + ++F+   F++  +  +   +  + G   L G+  
Sbjct: 833 EQMMEEFGALFGAIATAVFLVFMVMAMQFESCRFSIIVMICIPFSLIGSFGLMLLSGVTM 892

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           ++ ++   L L+G  +N+ ++  D        Y +S+     +  +    L   + T++ 
Sbjct: 893 SMPSLIGFLMLVGTVINNGILFID----TANQYRSSMDAETALVYAGRSRLRPILMTTLT 948

Query: 779 AFISVLPMAVW---GGSVIGSFAIPMAFG 804
             +S++PM +    G   +   A+ +  G
Sbjct: 949 TVLSMIPMGLGIGEGSEAMQGMAVVIIGG 977


>gi|295690935|ref|YP_003594628.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
 gi|295432838|gb|ADG12010.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
          Length = 1024

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/665 (11%), Positives = 181/665 (27%), Gaps = 42/665 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   +++L+ ++   GL            ++  P       +            V    
Sbjct: 10  KNPIPVIMLFLLLTIAGLA-----GFRSMRINNNPDVDLPIVV---------VTAVRPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  + L +      ++    +   + F      E + + V   +  
Sbjct: 56  APSELETQVTRLIEDSIAGLGQVRHTNSTIVDGASTTVIEFELGVDHERVTNDVRNAMSN 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D ++ ++         ++        +     ++S  +       +       
Sbjct: 116 LRGDLPQDMQEPVVTRVDISGDDLITYVVKAPTLTPE--QRSWFVDNDVSRALLAIRGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++    DP RL     T A +S   V  N    G    +     +     
Sbjct: 174 EVNRRGGVNREIEVALDPDRLAARGVTAAAVSQALVSSNADLPGGRVTISGAERAIRTLG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 ++    +                       G           I    A      
Sbjct: 234 AAGSVEQLRETRV--------------------PLSGGGAVRLADLGQITDHWAEPRSRA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S   T E        L      +++  +    V     S   
Sbjct: 274 RFDGQEVVTFSMIRSRGASEVQTAEKVRKAVEKLDKEHPEVQIEEITSN-VKYIEESYLA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L ++V+ + +   +  L+A  +I  +++ T A+L+ +G +L   ++  + 
Sbjct: 333 SMEALIIGAILAVLVVLLFLRDWRATLLAAVAIPTSLLPTFAVLAPMGQSLNGVTLLALS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E I    R  +S + +           +  +  T +     + F  
Sbjct: 393 LTVGILVDDAIVEIENIVRHMRGGKSPYAAAMEAADEIGLAVVATTFTIVAVFAPVGFMP 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+   +S+L S+  A  +   M  ++++               +L    +
Sbjct: 453 GIIGQFFKAFALAACISVLFSLVVARLLTPLMGAYMLKADHKHEDKDPAWMGPYL--KSL 510

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +    LF I                 +G  +  +       L    + +
Sbjct: 511 NWGLNNRWKVLLMGIPLFLISIFLATRLPFEFQPQADRGRSEFSIELPPGATLDETDAVV 570

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           + +    ++          + R       +V      +  +    +       Q   I G
Sbjct: 571 QRVTKELLARPEVVSVYASVGRNNAVNKGAVTADLTDKGQRISQQQFSRQMVDQFAAIPG 630

Query: 659 PKISR 663
            +I  
Sbjct: 631 ARIGA 635



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 79/250 (31%), Gaps = 10/250 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             ++ +     V L+ +    +         +    E      ++ +    V     +  
Sbjct: 243 ETRVPLSGGGAVRLADLGQITDHWAEPRSRARFDGQEVVTFSMIRSRGASEVQTAEKVRK 302

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             +K+ +  P   I+        I    +      +I + +A+L+ +     W   L A 
Sbjct: 303 AVEKLDKEHPEVQIEEITSNVKYIEESYLASMEALIIGAILAVLVVLLFLRDWRATLLAA 362

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +   +  T    A  G   N   + A+   +G  V+D +V  + +   ++      S 
Sbjct: 363 VAIPTSLLPTFAVLAPMGQSLNGVTLLALSLTVGILVDDAIVEIENI---VRHMRGGKSP 419

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                ++ +E     V T+        P+       G    +FA+     ++     S+ 
Sbjct: 420 YAAAMEAADEIGLAVVATTFTIVAVFAPVGFMPGIIGQFFKAFALAACISVLF----SLV 475

Query: 815 IAAPILLFIY 824
           +A  +   + 
Sbjct: 476 VARLLTPLMG 485



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 49/122 (40%), Gaps = 3/122 (2%)

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +   +  +  L L I    G   L    F+++ +  +L L+G +  + +++ +    
Sbjct: 860 FRSFAHPITIMVALPLAIGGAFGLLVLAKSSFSISTLIGILMLMGIAAKNSILLVE--YA 917

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            M +    +  R  I  + ++     + T++A    +LP A+ G      F  PMA  ++
Sbjct: 918 IMAMKEHGMDKRTAIVDAAHKRARPILMTTVAMGAGMLPTAI-GLGAEVEFRAPMAIAVI 976

Query: 807 VA 808
             
Sbjct: 977 GG 978


>gi|53803743|ref|YP_114650.1| HAE1 efflux family protein [Methylococcus capsulatus str. Bath]
 gi|53757504|gb|AAU91795.1| HAE1 efflux family protein [Methylococcus capsulatus str. Bath]
          Length = 1037

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/535 (12%), Positives = 141/535 (26%), Gaps = 35/535 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG-FLQMYSDELRSFLKKE-GI 86
              + +FP   P               + + +          ++     +   +    G+
Sbjct: 8   SLPVSQFPDIAPP-------------RVTVTLSFPGASADVLVKSSIITIERAINGVPGM 54

Query: 87  GVFSM---RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
                      +  I + F            V   L    S+L        +     +  
Sbjct: 55  KYMVSAATSAGEATIQILFDLGIDPLQAMIDVKTRLDTTMSRLPQLVTLEGVWVQRIQPS 114

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            ++          +             + +I       Q          +    +P R+R
Sbjct: 115 MLMYINLFSKDKNADQKFLFNYAYVNVVPEIQRVNGIAQARILGSRQYAMRIWLNPDRMR 174

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
               +T ++       +   +    G      +   +Y++                 +  
Sbjct: 175 AYKVSTEEVLKAIEEQSIIGRPGRLGQSTGVTAQSKEYVL-------------VYEGWYN 221

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
           K  +    I                 +                     + +     + + 
Sbjct: 222 KPEQYEDIIIRANSEGELLRIKDIGTVDLNSEFWNIYSDKDGLPSASIVLNQNYGTNASK 281

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            IE        L+          +          S      T      LV +V F+ +  
Sbjct: 282 VIEDVKKKLKELKETFPEGMDYEINYDVSRFLDASIHKVLHTLMEAFVLVALVTFVFLGD 341

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  L+   SI +++I T A++     ++ L ++  +VL IG+ VD  I+V E +  +  
Sbjct: 342 WRSTLIPILSIPVSLIGTFAVIQAFELSINLITLFALVLAIGIVVDDAIVVVEAVHAKME 401

Query: 444 KNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILIS 499
               S + +           I    +  +   V + F  G      R F ITM  +ILIS
Sbjct: 402 AEHLSPYQASKKVLGEIGGAIIAITLIMISVFVPISFMSGPVGVFYRQFGITMASAILIS 461

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554
              A+S+   +   I++    +     P+  F    +    +        +   I
Sbjct: 462 ALVALSLAPVLCGMILKNTHGQPKKRTPVRIFIDTFNYFFEKITGRYVTILEKII 516



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/262 (17%), Positives = 99/262 (37%), Gaps = 15/262 (5%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
              +    +    + + AN   +L  ++         +      D +      +      
Sbjct: 216 YEGWYNKPEQYEDIIIRANSEGELLRIKDIGTVDLNSEFWNIYSDKDGLPSASIVLNQNY 275

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYI 684
               ++V+E VKKK+ E+           +   +SR L   I K +  ++ + + + +  
Sbjct: 276 GTNASKVIEDVKKKLKELKETFPEGMDYEINYDVSRFLDASIHKVLHTLMEAFVLVAL-- 333

Query: 685 WIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            + F     W   L  I ++ + +  T      F +  NL  + A++  IG  V+D +VV
Sbjct: 334 -VTFVFLGDWRSTLIPILSIPVSLIGTFAVIQAFELSINLITLFALVLAIGIVVDDAIVV 392

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSF 797
            + +    K+    +S      K + E  G  +  ++      +P++   G V      F
Sbjct: 393 VEAVH--AKMEAEHLSPYQASKKVLGEIGGAIIAITLIMISVFVPISFMSGPVGVFYRQF 450

Query: 798 AIPMAFGIVVAASSSIFIAAPI 819
            I MA  I+++A  ++ +A  +
Sbjct: 451 GITMASAILISALVALSLAPVL 472



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + +L   I  +     LFG+  ++ +  A++ LIG    + V++ +     +
Sbjct: 872  SFILPLAVLCSLPAGIFGSYFLLKLFGLANDVYSQIALIMLIGLLGKNAVLIVEFA---V 928

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMAFGI 805
            + +   ++ +D   +         + TS A    ++P+    G   I   +       G+
Sbjct: 929  QRHGQGLTVKDAAIEGAKARFRPILMTSFAFIAGLIPLVKATGAGAIGNRTIGTASMGGM 988

Query: 806  VVAASSSIFIAAPILLFIYD 825
            V      + +   +      
Sbjct: 989  VFGTVVGVVLIPGLYYLFGK 1008


>gi|296158072|ref|ZP_06840905.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
 gi|295891840|gb|EFG71625.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
          Length = 1041

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/550 (12%), Positives = 156/550 (28%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +  +GL+      +       +P+                         
Sbjct: 10  RPVATSLLMVALVLVGLVAVRFLPVSSLPDVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +      V    +  + ITL F  S   +     V   +   
Sbjct: 56  PNVMATTVTAPLEVQLGEIPGLQQMVSYSSEGASVITLQFDLSLNLDIAEQNVQQAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NS L                   +L+   +        +       +   +I        
Sbjct: 116 NSFLPTGLPAPPTYAKVNPADQPILT-LAVTSKSMSLTQLQDAANNRLATKISEVPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +   +  +  E DP +L         +       N S+    F    L  +      
Sbjct: 175 VTTAGGNVPAVRVEADPQKLAAYGLNLDDLRTLLANVNVSQPKGNFDGPELDYTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D  +     +                            +      + +    V  G  
Sbjct: 235 IVDPQDYLATVIA--------------------YQNGAPVYLRDVARVSQAAQDVERGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T++        L +         V     G    S S  
Sbjct: 275 YNRTPAIVLNVQRQPGANVIATVDQIMKQLPALESTLPAGLQVTVVANTTGVIRSSVSDA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   LV++V+F+ +      ++   S+ +++I TLA++  L  ++   S+  +++
Sbjct: 335 AFELVLSVVLVVLVIFVFLRNVPATIIPSISVPVSLIGTLAVMYQLNYSIDNLSLMALII 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD +I++ E I     + ++   +   G  +   TI    ++ +   + L F GG
Sbjct: 395 ATGFVVDDSIVMIENIVRYLEEGKTPLEAALEGAGQIGFTILSLTVSLIAVLIPLLFMGG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              R    FAIT+ ++I+IS   ++++V  +   ++R +  +           L    +A
Sbjct: 455 VIGRLFSEFAITLAVTIVISAVVSLTVVPMLCARLLRAQAQRHPSRFERFSEGLFDRTLA 514

Query: 540 IQFMRARFWG 549
                  +  
Sbjct: 515 AYERGLNWVL 524



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 58/140 (41%), Gaps = 6/140 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +    ++ + +  TL          +  ++ A++   G+ V+D +V+ + +   ++    
Sbjct: 360 IIPSISVPVSLIGTLAVMYQLNYSIDNLSLMALIIATGFVVDDSIVMIENI---VRYLEE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAAS 810
             +  +   +   +     +  +++    ++P+   GG +      FAI +A  IV++A 
Sbjct: 417 GKTPLEAALEGAGQIGFTILSLTVSLIAVLIPLLFMGGVIGRLFSEFAITLAVTIVISAV 476

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            S+ +   +   +   +A+ 
Sbjct: 477 VSLTVVPMLCARLLRAQAQR 496



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 83/215 (38%), Gaps = 6/215 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + +      + +  +  ++     +    +I  +     +   + +   +  +I + +
Sbjct: 809  VTISFNLAQDASLSAAVAQIRDAERAVELPPSITTSFQGAAQAFEDSLSSEVYLLIAALV 868

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            A+ I + + ++ +   +  ++TL       L    + G + ++  +  ++ LIG    + 
Sbjct: 869  AVYIVLGVLYESYIHPVTILSTLPSAGIGALLALMIAGSDLDVIGIIGIVLLIGIVKKNA 928

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +           R+ I ++        + T++AA +  LPM +    G  + 
Sbjct: 929  IMMVDFALE--AERVHGKPAREAIFEASLLRFRPILMTTLAAMLGALPMLLGTGTGSELR 986

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                + +  G++V+   ++F    I LF      +
Sbjct: 987  RPLGLAIIGGLMVSQVLTLFTTPVIYLFFDRLAQR 1021


>gi|227825072|ref|ZP_03989904.1| preprotein translocase subunit secD [Acidaminococcus sp. D21]
 gi|226905571|gb|EEH91489.1| preprotein translocase subunit secD [Acidaminococcus sp. D21]
          Length = 440

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 147/395 (37%), Positives = 232/395 (58%), Gaps = 27/395 (6%)

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           K  L       + +        +V   A+ +S+ II +R++++G++E  IQR G  RI++
Sbjct: 60  KQGLDLQGGTHVVLQAEDTPEAKVDDDAMNRSISIIERRVNELGLTEPVIQRQGRDRIIV 119

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPG +DP +   +LG TA + F                            +E    ++G
Sbjct: 120 ELPGVKDPEQAIAMLGKTAMLEF--------------------------KDMEGNTVLTG 153

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             L  + A+ D    +PVV + F+E GA++F E+T  N+G  +A++LDG+VLTAP +++ 
Sbjct: 154 KDLKDSKASADQSG-RPVVTLQFNEEGAKKFAELTAKNVGNQIAILLDGKVLTAPRVSEP 212

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           I  G AQI+G+   + A  LA +LR+GSLPIKL +VE R VG  LG DS  K   A   G
Sbjct: 213 ITGGNAQITGSQNAQEAEHLAILLRSGSLPIKLEVVENRTVGPTLGQDSKDKSVKAFAIG 272

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           +  + +FM+  Y   G +AD  + L  +L LA++  L ATLTLP IAGI+L IG+AVD+N
Sbjct: 273 VAGVFIFMLFFYRLSGFIADVVLLLYTLLVLAVMKGLNATLTLPGIAGIILSIGMAVDAN 332

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ER +EE +  +++  +++ GFSRA+ TI DSN+T ++A  VLF+ G G +RGFA+T
Sbjct: 333 VLIFERFKEELKAGKTLRAAVNAGFSRAFVTIMDSNVTTIMAAAVLFYLGTGPIRGFAVT 392

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           + L +LISMFTAI++ + ++  ++  +  K+    
Sbjct: 393 LALGVLISMFTAITVTKFILNALVGSQFTKNPFFY 427



 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 79/207 (38%), Gaps = 4/207 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G   AQ      +  +   +     +     VGP + ++   K +    I    + I++
Sbjct: 221 TGSQNAQEAEHLAILLRSGSLPIKLEVVENRTVGPTLGQDSKDKSVKAFAIGVAGVFIFM 280

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              ++      A   L+L     L           L  +A ++  IG +V+  V++++R 
Sbjct: 281 LFFYRLS-GFIADVVLLLYTLLVLAVMKGLNATLTLPGIAGIILSIGMAVDANVLIFERF 339

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           ++ +K      + R  ++   +      + +++   ++   +   G   I  FA+ +A G
Sbjct: 340 KEELKA---GKTLRAAVNAGFSRAFVTIMDSNVTTIMAAAVLFYLGTGPIRGFAVTLALG 396

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++++  ++I +   IL  +   +    
Sbjct: 397 VLISMFTAITVTKFILNALVGSQFTKN 423



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 43/129 (33%), Gaps = 18/129 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           + N   +I+  +   I   + +                    +  GLDL+GG+H+VL+  
Sbjct: 31  QKNRIKLIVSVLAIIICFALLVKPL--------------ALSVKQGLDLQGGTHVVLQAE 76

Query: 61  DEDD--FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
           D  +    +  +      +   + + G+    +++   ++I +     +  E     +  
Sbjct: 77  DTPEAKVDDDAMNRSISIIERRVNELGLTEPVIQRQGRDRIIVELPGVKDPEQAIAMLGK 136

Query: 118 FLQGVNSKL 126
                   +
Sbjct: 137 TAMLEFKDM 145


>gi|285018932|ref|YP_003376643.1| rnd superfamily protein [Xanthomonas albilineans GPE PC73]
 gi|283474150|emb|CBA16651.1| probable rnd superfamily protein [Xanthomonas albilineans]
          Length = 1066

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 56/515 (10%), Positives = 139/515 (26%), Gaps = 34/515 (6%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
              + + +  I L++A         +   P                  ++ L     + +
Sbjct: 9   RRAVMTSVVMIALVLAGGMAFFALPVSELPDVSFPTIT---------VNMSLPGANPETM 59

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    +   S L+       +      +I L F+ SR  +  A  V   +      L
Sbjct: 60  AAAVATPLERQFSGLQGLDTMSSTSSVGATRIVLQFSLSRNVDAAAQDVQNAVSQAAGLL 119

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             +     +         I+        +    + Q      +   ++       Q   +
Sbjct: 120 PREINPAQIQKEDPSAAPIMHLILRSKTIALPLLNQ--FAKDRVALRLASVPGAGQIDVN 177

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                 +    +P  L        ++       N++        R    +      ++  
Sbjct: 178 GAQKYAVRLFVNPHLLAARHLGFDQIVSAVQAGNSNAPAGTLMGRARSYTVKADGQLKTA 237

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +                       +                +    +  +     L   
Sbjct: 238 ADFD--------------------KLVLTYADGAPLRFQDVGHAEDSVENLQTAASLNGQ 277

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
              +     +   +     +        +RA         V          S    + T 
Sbjct: 278 RAIEINIHRQPGANTLSVTKGIQAALPGIRAQLPSDAELDVLYDRGDYIGASVEDVEWTL 337

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                LV+IV+ + +      L+   ++  ++I T A++ LL  +L   S+  + L +G 
Sbjct: 338 IGSLVLVIIVILLFLRSWIATLIVALALPTSLIGTFAVMRLLHYSLDNISMLALTLSVGF 397

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GG 483
            VD  I+V E I     +  S   +          T+    ++     + + F G   G 
Sbjct: 398 VVDDAIVVIENIVRHAEQGASRIEAAMKASKEIGFTVLSMTLSLSAVFLPIVFMGGLVGR 457

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
               F + + +++++S   ++++   +    +  K
Sbjct: 458 LFSEFGMVIAIAVILSGIISLTLTPMLASRWLDPK 492



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L     L   +  T     L     +  ++ A+   +G+ V+D +VV + + 
Sbjct: 351 FLRSWIATLIVALALPTSLIGTFAVMRLLHYSLDNISMLALTLSVGFVVDDAIVVIENI- 409

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
             ++      S  +   K+  E     +  +++     LP+   GG V      F + +A
Sbjct: 410 --VRHAEQGASRIEAAMKASKEIGFTVLSMTLSLSAVFLPIVFMGGLVGRLFSEFGMVIA 467

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRA 828
             ++++   S+ +   +     D + 
Sbjct: 468 IAVILSGIISLTLTPMLASRWLDPKK 493



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 75/202 (37%), Gaps = 5/202 (2%)

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                 +  +  +         I        +     ++   + ++I+ + +   + I ++
Sbjct: 842  DAAAAIGSLMAQTLGKGDARAISGQFAGSAQAFENSLKTLPMLLLITVLLIYGVLAILYE 901

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK-N 747
                 +  +T+L L     +    LF  E NL +   ++ L+G    + +++ D   +  
Sbjct: 902  DALHPITILTSLPLAGFGAIFMLVLFRQELNLFSFVGLILLVGLVKKNGIMMVDYALELE 961

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                    S R  + ++        + T++AA +  LP+A+    G        I +  G
Sbjct: 962  RSGEEQWKSPRAAMIEAAKVRFRPIMMTTLAAVLGSLPIALGFGAGAEARRPLGIAVVGG 1021

Query: 805  IVVAASSSIFIAAPILLFIYDW 826
            ++ + + ++++     + + +W
Sbjct: 1022 LLFSQALTLYLTPAFHIAMAEW 1043


>gi|144898122|emb|CAM74986.1| multidrug resistance protein [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 1024

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 72/525 (13%), Positives = 156/525 (29%), Gaps = 40/525 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +GL   L        + ++P  M    I+                
Sbjct: 7   KRPVLASVISLLILFVGLRALLM-----LPVRQYPE-MKNTVIT--------ITTTYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + + GF+     +  +             Q  + I      +   +    +V   +  
Sbjct: 53  DAELIQGFITQPLQKAVATSAGLDYITSQSVQSASVIKAFVRLNEDPDAAMTEVMSKVNE 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L       +L   T +  +      +  ++     + +  + R    ++       
Sbjct: 113 VRSVLPRGINDPVLKKETGQTFASAYLAFSSAELSQE--QITDYVNRVIQPKLASVPGVA 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L QL  T   ++      N +         +         
Sbjct: 171 NPEVFGGQNFSIRVWLDPEKLAQLDMTADDVNAALTSNNFTAAAGSTKGAY--------- 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       +    A  D  T     ++     G R         +           
Sbjct: 222 -----------DVVTTQARTDLNTIADFRNLVIRHEGTRLVRLSDIAEVSLGAQNDEMAV 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAM-LRAGSLPIKLNIVEERNVGADLGSDS 360
             +             + +    I+     A   + A   P     +   +      +  
Sbjct: 271 FASGKRAIFVGVFTTPEANPLTVIKEIRDSALPGIVAQLPPGLNAEIAYDSTVFIQAAID 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A +V+IV+F  +   +   +   ++ L++I     L  LG ++ L ++  +
Sbjct: 331 EVVKTILEAAVIVMIVIFAFMGSFRSVAIPVVTVPLSLIGVALFLLALGFSINLLTLLAM 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     +  S F +  +G       +    IT       + F 
Sbjct: 391 VLAIGLVVDDAIVVVENVHRHIEEGLSPFQAAIVGTREIAGPVISMTITLAAVYAPIAFM 450

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G   G   + FA+ +  S+++S   A+++   M   I+++ + K 
Sbjct: 451 GGLTGSLFKEFALALAGSVIVSGIIALTLSPMMCSLILKHDEDKK 495



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 78/208 (37%), Gaps = 10/208 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +   L  +  ++   +      ++ +       E+++  +   +I  I +  ++   
Sbjct: 295 KEIRDSALPGIVAQLPPGLNAEIAYDSTVFIQAAIDEVVKTILEAAVIVMIVIFAFMG-- 352

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +      + T+ L +     F    G   NL  + A++  IG  V+D +VV + +   
Sbjct: 353 -SFRSVAIPVVTVPLSLIGVALFLLALGFSINLLTLLAMVLAIGLVVDDAIVVVENVH-- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +     +S          E  G  +  ++       P+A  G   GS+   FA+ +A  
Sbjct: 410 -RHIEEGLSPFQAAIVGTREIAGPVISMTITLAAVYAPIAFMGGLTGSLFKEFALALAGS 468

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++V+   ++   +P++  +     ++ +
Sbjct: 469 VIVSGIIAL-TLSPMMCSLILKHDEDKK 495



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 80/239 (33%), Gaps = 10/239 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L+         Q        +                LE +  ++              
Sbjct: 778  TLKQAVKPVSLNQFNQLNSFTISAFPMPGTTLGQSLATLEGIATEVLPQGTTYDFAGQSR 837

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               +    L        + + + + + +  +F+ +   L  + ++ L +   L   AL  
Sbjct: 838  QYKQEGASLTVT----FVFALVIIFLVLAAQFESFRDPLVIMVSVPLSLCGALIPLALGV 893

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               N+     ++TLIG      +++ +  R+  +     +S  + +  + +  L   + T
Sbjct: 894  ASMNIYTQVGLITLIGLITKHGILICEVARE--RQEQEGLSRLEAVQVAASLRLRPILMT 951

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + A    ++P+ +    G +   S A+ +  G+ +    ++F+   I  F+   R + A
Sbjct: 952  TAAMVAGLIPLLMASGAGAASRFSIAVVIVAGMSIGTLFTLFVLPVIYTFLATDRKQRA 1010


>gi|222106584|ref|YP_002547375.1| AcrB/AcrD/AcrF family protein [Agrobacterium vitis S4]
 gi|221737763|gb|ACM38659.1| AcrB/AcrD/AcrF family protein [Agrobacterium vitis S4]
          Length = 1035

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/522 (11%), Positives = 133/522 (25%), Gaps = 44/522 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +  +GL+           +   P+                  + +    
Sbjct: 10  RPVGTTLLAIGLMMLGLVA-----YRFLPVASLPAVDLPT-------------IRVTASR 51

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +              +        +       I L F  SR  ++ A  V   
Sbjct: 52  PGADPESMASSVAAPLERHLGAIAGVTEMTSTSGLGTTNIFLQFDLSRNVDSAAQDVQAA 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +      L  D      +       S +L+   +      A           + +I   E
Sbjct: 112 INAAVGDLPSDLPSLPSMRKANPAASPILT-LALTSDTIPASAIYDAADSVVVQRISQVE 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                  S      +    +P RL  +  +   +    V  N               +  
Sbjct: 171 GVGDVSVSGADQPAVRVRLNPDRLAAIGLSADDVRTAIVNGNALAPIGAIDGSQAFYALS 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +    +                       +            V    +   +    
Sbjct: 231 VNAQLITPED--------------------YGQLVIHASNGIAVRLVDIATVEPGVRNRR 270

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                          +  A  +   T++    L   ++          +          S
Sbjct: 271 SDAWFNGKPAVLLNITKAADANVMSTVDAVKALIPEVKQLIPAGIEVDILNDRTKTIHAS 330

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               + T      LV+ V+F+ +      L A  ++ L+     A + L G ++   S+ 
Sbjct: 331 VEDMQFTLLATVALVMAVVFVFLRRLVPTLAAGLTVPLSFAGAFAAMWLTGLSIDNLSLM 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + +  G  VD  I++ E I     K      +   G  +   T+   +I+ + A + LF
Sbjct: 391 ALAVASGFVVDDAIVMIETIYANIEKGMKPLEAAHAGARQIGFTVIAISISLMAAFIPLF 450

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           F GG   + F +T  L++  ++  +  +   +   I  ++  
Sbjct: 451 FMGGIVGKFF-LTFSLTLAFTIAVSTVVSLTLTPMICGHRIR 491



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 78/204 (38%), Gaps = 7/204 (3%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             +    + ++    ++ +  ++ +++P     +      K     +      ++ +   
Sbjct: 285 ITKAADANVMSTVDAVKALIPEVKQLIPAGIEVDILNDRTKTIHASVEDMQFTLLATVAL 344

Query: 680 MLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           ++  +++  +     L A  T+ L          L G+  +  ++ A+    G+ V+D +
Sbjct: 345 VMAVVFVFLRRLVPTLAAGLTVPLSFAGAFAAMWLTGLSIDNLSLMALAVASGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG--- 795
           V+ + +  N+      +   +       +     +  S++   + +P+   GG V     
Sbjct: 405 VMIETIYANI---EKGMKPLEAAHAGARQIGFTVIAISISLMAAFIPLFFMGGIVGKFFL 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
           +F++ +AF I V+   S+ +   I
Sbjct: 462 TFSLTLAFTIAVSTVVSLTLTPMI 485



 Score = 42.0 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 29/154 (18%), Positives = 63/154 (40%), Gaps = 6/154 (3%)

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++     L  I+TL       L    + G E  + A   ++ LIG    + +
Sbjct: 867  VYIVLGILYESLIHPLTIISTLPSAGLGALLALWISGTELTIVAFIGIILLIGIVKKNGI 926

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +        +S  D I ++        + T++AAF+  LP+ +    G  +  
Sbjct: 927  MLVDFALE--AERQHGMSPEDAIHEACLRRFRPIMMTTLAAFMGALPLVLATGPGADLHR 984

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               + +  G++V+ + +++    I L      A+
Sbjct: 985  PLGVTIIGGLIVSQALTLYTTPIIYLIFARLSAR 1018


>gi|296126068|ref|YP_003633320.1| acriflavin resistance protein [Brachyspira murdochii DSM 12563]
 gi|296017884|gb|ADG71121.1| acriflavin resistance protein [Brachyspira murdochii DSM 12563]
          Length = 1050

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 90/656 (13%), Positives = 201/656 (30%), Gaps = 51/656 (7%)

Query: 1   MRNNP---WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           MRN         +   +C I +LI     L +  +D  P                     
Sbjct: 1   MRNFIELVVKRPVAVFMCMIAVLILGFVSLSKLAVDFLPDMELPYIT---------VRTE 51

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
            E    + V   +    +   + +        + ++ ++ + + F            +  
Sbjct: 52  YENAGPEEVEKSVTRIVENAVATVSDINTITSTSQEGESSVFIEFNWGTDLAVATADIRE 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            + GV + L  D     +   +   + ++                   I  Q +++I  +
Sbjct: 112 AIDGVKNSLPDDADSPTVFKFSTDMMPVMEIAFFGTDN---LGALYTLIDNQILNKIEQA 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +      +  ++  +   +RL         +       N +  G        + + 
Sbjct: 169 SGVARAEIRGGLQTEMKVDLVLNRLHAYGIDINTIVSLLSSENQNLSGGETYEGVYKYTL 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                     +I    +   T                               + +  +  
Sbjct: 229 RTMGEFTTVEDIENTVVALKT-------------------NDTPIKLKDIGRVYQGYSDD 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +          + ++  +     +      A L           +   N      
Sbjct: 270 SEIVKINGMPAISVSVNKESGGNTVNVSKAVQKQLANLT--LPEGVEYEILFNNADNVNE 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T        +I+L + +   K   +   SI +++I+T  L+  +G TL + S+
Sbjct: 328 SINGVLDTAWQGGLFAVIILMLYLWNIKTVSIIAISIPISIIITFTLMYFMGITLNIISL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           +G+VLGIG+ VD++I+V E I          + S   G S     I  S +T +   +  
Sbjct: 388 SGLVLGIGMMVDNSIVVLENIFYYRNNGYGKYSSAINGTSSVALAISASTLTTIAVFLPF 447

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   R   IT+ +S++ S+F A++IV  +   ++  KK K +           
Sbjct: 448 LFVEGQTGQLFRDLCITVTVSMIGSLFVALTIVPMLGARLVTNKKTKFLIPIENFVNKNF 507

Query: 535 PDCIAIQF---------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
            + +   +          + +     +S++F I ++ L F     +    +G  ++ V  
Sbjct: 508 HNRVNNLYSSVLHYSIKNKKKVLISSLSVVFVIIALGLTFIGKEGFPTSDEGQFKIDVEM 567

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                    +S +      +   QN  GE    ++ + Q G    +  +   ++ K
Sbjct: 568 PVGTKSEQTQSFVT---RMESDIQNLIGEDFDRMQSRVQSGSDENKAEIRVQLRDK 620



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 69/199 (34%), Gaps = 7/199 (3%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
             ++    + E V    + N      +    ++     G + + I +++Y+W        
Sbjct: 301 QKQLANLTLPEGVEYEILFNNADNVNESINGVLDTAWQGGLFAVIILMLYLW---NIKTV 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
                ++ + I  T       GI  N+ +++ ++  IG  V++ +VV + +         
Sbjct: 358 SIIAISIPISIIITFTLMYFMGITLNIISLSGLVLGIGMMVDNSIVVLENIFYYRNNGY- 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
              +   I+   +        +++      LP     G     F   +   + V+   S+
Sbjct: 417 -GKYSSAIN-GTSSVALAISASTLTTIAVFLPFLFVEGQTGQLFR-DLCITVTVSMIGSL 473

Query: 814 FIAAPILLFIYDWRAKNAR 832
           F+A  I+  +      N +
Sbjct: 474 FVALTIVPMLGARLVTNKK 492


>gi|148974846|ref|ZP_01811826.1| Cation/multidrug efflux pump [Vibrionales bacterium SWAT-3]
 gi|145965355|gb|EDK30604.1| Cation/multidrug efflux pump [Vibrionales bacterium SWAT-3]
          Length = 1015

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 76/558 (13%), Positives = 159/558 (28%), Gaps = 35/558 (6%)

Query: 56  LVLEVDEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           V G++        +               ++ IT+        +  
Sbjct: 45  ITITTSYPGASASSVQGYVTQPLQAEIAQTAGIDFMTSDSALGKSVITVYLKLGYPSDGA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++   +Q V  KL        ++ +T +   I+    + D + +  +  S  + R   
Sbjct: 105 LTEILSLVQQVKYKLPSGVLDPSILKSTSQS-PILYVSFSSDTLKTEQV--SDYVSRVVK 161

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
                 E   +     +    +     P +L     T   +       N           
Sbjct: 162 PTFSTVEGVSKVDMLGQQDFAMRIWLKPQKLASYGLTATDVQNALRANNIVSAAGKLQNP 221

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           ++                         A+ D  + +   ++S      +         + 
Sbjct: 222 YIE--------------------VDINAHTDSSSVEDFKNMSLKAHDGQLVHLKDVATVE 261

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
              A                  S  A  +    +E    L   + AG        V   +
Sbjct: 262 LGAATYDSDVEFNGVTTVSTAISNTATSNPLTVVEGIYELLPQIEAGLPDGIKADVVYDS 321

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T    A +V+IV+F  +   +  L+   +I L++I ++  +  +G +
Sbjct: 322 TKFIETSIDEVAKTLMEAALIVVIVIFAFLGSMRAMLIPLVTIPLSLIGSMFFMLSMGFS 381

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           + L ++  +VL I L VD  I+V E          S   +          ++    IT  
Sbjct: 382 INLLTLLAMVLAISLVVDDAIVVVENTFRHLEDGISPIKAAINSAREIAGSVIAMTITLA 441

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSI 523
                + F G   G     FA T+  S+LIS F A+++   M   ++       K +K I
Sbjct: 442 AVYAPIGFMGGLTGKLFTEFAFTLAGSVLISGFIALTLTPMMCSKLLNKSVLDGKLVKKI 501

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           D+            +        +    +  L        + T       + +G + +  
Sbjct: 502 DVVIAGVTERYRKVLEHVLNNRVYIWPVVGTLLISLEFMFMNTASELAPEEDQGVMIVMG 561

Query: 584 LANRPVDLSVVRSNLESL 601
                 +   +R    +L
Sbjct: 562 QGPAQANTDYIRHFTPAL 579



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 6/240 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +         N     +  +              + E++ +    +           
Sbjct: 261 ELGAATYDSDVEFNGVTTVSTAISNTATSNPLTVVEGIYELLPQIEAGLPDGIKADVVYD 320

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +       +  + I +++           L  + T+ L +  ++ F    G 
Sbjct: 321 STKFIETSIDEVAKTLMEAALIVVIVIFAFLGSMRAMLIPLVTIPLSLIGSMFFMLSMGF 380

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             NL  + A++  I   V+D +VV +      +     IS       S  E  G  +  +
Sbjct: 381 SINLLTLLAMVLAISLVVDDAIVVVEN---TFRHLEDGISPIKAAINSAREIAGSVIAMT 437

Query: 777 MAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +       P+   GG        FA  +A  ++++   ++ +   +   + +    + ++
Sbjct: 438 ITLAAVYAPIGFMGGLTGKLFTEFAFTLAGSVLISGFIALTLTPMMCSKLLNKSVLDGKL 497



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 77/232 (33%), Gaps = 8/232 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L SL     S Q    ++   +         +    + E  +        +     +   
Sbjct: 775  LASLIEISQSVQPSKVDQFQQLNSAMIEAKMMPGISIGEAYQVMEEGAAQILPKSYSTDT 834

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALF 714
              ++ + L     +        ++IY+ +          L  +T++ L I   L    L 
Sbjct: 835  SGQLRQFLQEGSSLVTTFFLALVIIYLVLAAQFESLRDPLVVLTSVPLSIFGALMPLYLG 894

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                N+     ++TLIG      +++ +    N        S R+   +S    +   + 
Sbjct: 895  IDTLNIYTEVGLVTLIGLISKHGILIVE--FANQMQQELKCSRREAAIRSATVRMRPVLM 952

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            T+ A  + V+P+ +    G     S  + +  G+ V    ++F+   I  ++
Sbjct: 953  TTAAMVVGVVPLLIASGAGAQSRFSIGLVITVGMSVGTLFTLFVVPTIYTYL 1004


>gi|326799999|ref|YP_004317818.1| transporter hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
 gi|326550763|gb|ADZ79148.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Sphingobacterium sp. 21]
          Length = 1059

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 62/644 (9%), Positives = 163/644 (25%), Gaps = 38/644 (5%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF-LQMYSDELRSFLKKEG-IGV 88
            + ++P   P               + +            ++     L   +     +  
Sbjct: 31  PISQYPEIAPPT-------------VQVTASYQGANADVVMKSVIIPLEEQINGVEHMTY 77

Query: 89  FSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
            + +   +    IT++F      +  A  V   +      +  +  K  + TT +    I
Sbjct: 78  MTSKASNDGTAVITVNFEQGTDPDLAAVNVQNRVAKATGVMPAEVIKTGITTTKKLNAEI 137

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
                  +            +    + ++                  +     P  +   
Sbjct: 138 FGFLIYSENNSYDVNFLDNYMRINIVPELKRIPGVADVQVWSDQTYSMRIWLKPDVMASY 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                 +       N        G    +     +Y+++    +              K 
Sbjct: 198 GLVPDDVLAALAEQNLEAAPGKLGENSSKT---FEYVLKYTGRL-------------EKP 241

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +       +         +                  +    S  A  + +   
Sbjct: 242 EQFEDIVLRATRDGQLLRLKDVATVELGAFSYNTDLTAHGFPSSGGAISQSAGANAHEIN 301

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E    +     A                    S +    T      LV I++F+ +   +
Sbjct: 302 ERIVEMLKKAEADFPSGVKWTTFINVNSFLDASIAKLVQTLVEAFILVFIIVFIFLQDFR 361

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ + +I T   L + G TL L ++  +VL IG+ VD  I+V E +  +  + 
Sbjct: 362 STLIPAIAVPVAIIGTFFFLKIFGFTLNLLTLFALVLAIGIVVDDAIVVVEAVHAKIGQG 421

Query: 446 -QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMF 501
            +S   +     +   S I    +      V + F     G   + F IT+ ++I+IS  
Sbjct: 422 AKSARKATLHAMNEISSAIISITLIMAAVFVPVTFIQGSAGVFYKQFGITLAVAIIISAV 481

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            A+++  A+    ++  ++        +            F+      +    L      
Sbjct: 482 NALTLSPALCALFLKSHEVTDEAHTKRNWLRRFFIMFNTAFVALSDRYIRSVKLLIKHKW 541

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +    L   +                D   +  ++       +        +   +  
Sbjct: 542 LSISGIVLFSTLLIFFLKTTPTGFVPNEDSGAIYGDIILPPASTLEQTTRIANEVDSIAR 601

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                +  ++   + ++         +              +++
Sbjct: 602 SMPEVELSSRLVGMNLISGTGGSYGAMFIALKPWKERTGEGQDI 645



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 79/201 (39%), Gaps = 8/201 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +     +L+  +      V  +T  N          +L++  +   I+  I + I++   
Sbjct: 301 NERIVEMLKKAEADFPSGVKWTTFINVNSFLDASIAKLVQTLVEAFILVFIIVFIFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +   L     + + I  T  F  +FG   NL  + A++  IG  V+D +VV + +   
Sbjct: 359 -DFRSTLIPAIAVPVAIIGTFFFLKIFGFTLNLLTLFALVLAIGIVVDDAIVVVEAVHAK 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFG 804
           +       S R     ++NE     +  ++      +P+  + G + +    F I +A  
Sbjct: 418 IGQGAK--SARKATLHAMNEISSAIISITLIMAAVFVPVTFIQGSAGVFYKQFGITLAVA 475

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           I+++A +++ ++  +      
Sbjct: 476 IIISAVNALTLSPALCALFLK 496



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +I     + +Y  +      +      + +L + +     F  L G++ N+    +++ L
Sbjct: 876  MIFGLCLIFVYFLLSAQYKSYILPFAVLLSLPIGLAGAFLFARLGGLDNNIFLQISLIML 935

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG    + +++ +    +++   + +S         +  L   + TS A    +LP+ + 
Sbjct: 936  IGLLAKNAILIVEF---SVQRRNSGLSLVRAAISGASARLRPILMTSFAFVFGLLPLMLA 992

Query: 789  WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G   +   S       G+++     IF+   + +       +
Sbjct: 993  SGVGALSNRSIGTAAVGGMLIGTVFGIFVIPALFVMFQALHER 1035


>gi|158423201|ref|YP_001524493.1| putative RND efflux transporter precursor [Azorhizobium caulinodans
           ORS 571]
 gi|158330090|dbj|BAF87575.1| putative RND efflux transporter precursor [Azorhizobium caulinodans
           ORS 571]
          Length = 1040

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/612 (10%), Positives = 159/612 (25%), Gaps = 40/612 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +   GL            +   P                     L   
Sbjct: 8   RRPVMTTLMMLSLIIGGLFA-----YRLLPVAALPRVDFPTI---------SITATLPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +   S +        +  Q    IT+ F  SR  ++ A  V   L  
Sbjct: 54  SPDTMATAVATPIERQLSTISGITSLTSTSTQGSTSITIQFDLSRNIDDAALDVQSALSV 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  +                ++L   +   +   A+  +         QI      
Sbjct: 114 AQRQLPDEMTTPPSFRKVNPADAPVILLAVSSATLPLSAV--NEYADTVIGQQISQLPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +    DP+       + + +        ++    +             
Sbjct: 172 AQVQIYGTQKYAVRIRVDPAAAAARGISASDIQNAIEARASNTPIGLLSGPK----QALT 227

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +      +G +                  +                 I   +      
Sbjct: 228 IDMGAAKADAGEYRK----------------LVIAFRNGAPVRLDEIATISDGVENERVA 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    ++         R+         V      +   +  
Sbjct: 272 SWFNDQRAIVLAVVRQPDANTVAVVDEVRSHLGQYRSQVPASVEIDVLNDRSVSIREAVH 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T      LV++V+F+ +   +  ++   ++ +++I T  ++  L  ++   ++  +
Sbjct: 332 DVQKTLFEAIVLVVLVIFLFLRNVRATIIPSLALPISIIATFGVMWALNFSINNMTLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I+V E I     + +  F +   G      TI    ++ +   + + F 
Sbjct: 392 TLCVGFVVDDAIVVLENIYRHIEEGEKPFAAAIRGSREIGFTIISMTLSLVAVFIPVLFM 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FA+T+ ++ILIS F ++++   +   +++                 + D 
Sbjct: 452 GGVVGRVFREFAVTISIAILISGFVSLTLTPMLCARVLKAPDHHKTPNLFYRLTERMFDA 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               +  +  + +       + +   +      Y +  KG   +         +      
Sbjct: 512 WLAGYRHSLDFVLRHRFFMLLVTFATIGISAALYVVIPKGFFPVEDNGFITATVEAATDT 571

Query: 598 LESLQIGDISFQ 609
                +      
Sbjct: 572 SFEAMVERQKKV 583



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 20/160 (12%), Positives = 58/160 (36%), Gaps = 9/160 (5%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            ++ +     +++  + + +++         +     L + I  T G         N   
Sbjct: 331 HDVQKTLFEAIVLVVLVIFLFL---RNVRATIIPSLALPISIIATFGVMWALNFSINNMT 387

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+   +G+ V+D +VV + +    +             +   E     +  +++    
Sbjct: 388 LLALTLCVGFVVDDAIVVLENI---YRHIEEGEKPFAAAIRGSREIGFTIISMTLSLVAV 444

Query: 783 VLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +P+   GG    V   FA+ ++  I+++   S+ +   +
Sbjct: 445 FIPVLFMGGVVGRVFREFAVTISIAILISGFVSLTLTPML 484



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 97/235 (41%), Gaps = 7/235 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              + +++      Q    ++   V + +      +  + +E + +   +    +++    
Sbjct: 784  ETVATIRRTVGPLQIAHQQQQPAVTISFNLAPGTSLGQAVEQIGQAERDAGLPASVSTGF 843

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                ++ ++ +    + ++ + + + I + + ++ +   L  ++ L       L    +F
Sbjct: 844  QGTAQVFQDALGNQALLILAAVVVIYIVLGVLYESFVHPLTILSGLPSAGIGALVTLMIF 903

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             IE ++ A+  ++ L+G    + +++ D   +  +     +   D I ++        + 
Sbjct: 904  DIELSVIAIIGIVMLVGIVKKNAIMMIDVALERRRQ---GVGALDAIREAALLRFRPIMM 960

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            T++AA   VLP+A+    G  +     + +  G++++   +++I   I L++  +
Sbjct: 961  TTLAAIFGVLPIALGAGAGSELRQPLGVAVVGGLLLSQLLTLYITPVIYLYLDRF 1015


>gi|260173287|ref|ZP_05759699.1| AcrB/AcrD/AcrF family multidrug resistance protein [Bacteroides sp.
           D2]
 gi|315921560|ref|ZP_07917800.1| multidrug resistance protein [Bacteroides sp. D2]
 gi|313695435|gb|EFS32270.1| multidrug resistance protein [Bacteroides sp. D2]
          Length = 1068

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/669 (11%), Positives = 172/669 (25%), Gaps = 43/669 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           L    ++++P   P              +   +    + V   +    +E  + ++    
Sbjct: 28  LFTLPVEQYPDIAPPTVQ---------VYTAYDGASAETVQKSVIAPLEEAINGVEDMTY 78

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              S     + +IT+ F      +  A  V   +     +L  +  +  +     +   +
Sbjct: 79  MTSSASNAGSAEITIYFKQGTNPDMAAVNVQNRVSKAAGQLPAEVTRVGVSVNKRQNGML 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +   +           S  I       I               +  +     P  + Q 
Sbjct: 139 QIFTLHSPDSSLDENFLSNYININLKPAILRISGVGDVQVMG-GVYSMRVWLKPDVMAQY 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
               + ++      N        G                                    
Sbjct: 198 KLIPSDVTAALASQNIEAATGSIGENSK----------------EAKAYTMKYRGRLMTP 241

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +                NI                     +    A  +     
Sbjct: 242 EEFGEIVIRSTKNGEVLRLKEIANISLGQESYSYQGSFNGKPGVSCMVYQTAGSNATEIN 301

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                  A                        S      T      LV++V+++ +   +
Sbjct: 302 REIDAFLADASKRLPKGAEITQLMSTNEFLFASIHEVLKTLIEAILLVILVVYVFLQDIR 361

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+    IF+++I T A ++L+G ++ L ++  +VL IG  VD  I+V E ++ +    
Sbjct: 362 STLIPLVGIFVSLIGTFAFMALVGFSINLITLFALVLVIGTVVDDAIIVVEAVQSKFDSG 421

Query: 446 Q--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG--GAVRGFAITMGLSILISMF 501
                  S+D     + + +  S +   +   V F  G        F +TM +++ IS  
Sbjct: 422 YRSPYMASVDAMKGLSGAIVTTSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVAVGISTI 481

Query: 502 TAISIVRAMMIFI------------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
            A+++  A+   I              +        N             + F   R W 
Sbjct: 482 NALTLSPALCALILRPYTNEDGTQKQNFAARFRRAFNTAFESLSERYKKGVLFFIRRKWL 541

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
            G  +  ++  + LL        +  +    + V  +     S+  ++    ++ +   Q
Sbjct: 542 TGAFVAGTVVILALLMNSTKTGLVPDEDQGLVFVAVSTAPGNSLYATDGIMNRVEERIQQ 601

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
               ++   V      G   +       +            +Q         + ++    
Sbjct: 602 IPQVKQVLKVTGWSMGGAGNSSGIFFVRLTPWDERPEEEDHVQAVIGQVYARTGDIKDAT 661

Query: 670 IVGVIISAI 678
           +  +    I
Sbjct: 662 VFAMAPGMI 670



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 79/195 (40%), Gaps = 8/195 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +      L    K++ +   ++ + +T         E+++  I  +++  + + +++   
Sbjct: 301 NREIDAFLADASKRLPKGAEITQLMSTNEFLFASIHEVLKTLIEAILLVILVVYVFLQ-- 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +  + + +  T  F AL G   NL  + A++ +IG  V+D ++V + ++  
Sbjct: 359 -DIRSTLIPLVGIFVSLIGTFAFMALVGFSINLITLFALVLVIGTVVDDAIIVVEAVQSK 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                   S       ++    G  V TS+      +P++   G+       F + MA  
Sbjct: 418 FDSGYR--SPYMASVDAMKGLSGAIVTTSLVFMAVFIPVSFMSGTSGTFYTQFGLTMAVA 475

Query: 805 IVVAASSSIFIAAPI 819
           + ++  +++ ++  +
Sbjct: 476 VGISTINALTLSPAL 490



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/395 (9%), Positives = 113/395 (28%), Gaps = 21/395 (5%)

Query: 452  LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +     + Y+   D     + A       G        I M       +     I R  +
Sbjct: 643  VQAVIGQVYARTGDIKDATVFAMAPGMIPGYDMGNALDIQMQDKAGGDLTEFFGITRQFI 702

Query: 512  IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
              + +  ++     +    +      +               +          +    N 
Sbjct: 703  DSLNQRPELAMAFSSFEINYPQWQVDVDAAKCLRAGIMPDEVLSTLGGYYGGSYVSNFNR 762

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                   + +    N  +D + +  +   L  G+++  +       +   +     ++  
Sbjct: 763  -FSRVYRVMVQADPNYRLDEASLNRHFVRLSNGEMAPLSQFVTLTKVYGAESLNRFNMYN 821

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-----------VIISAIAM 680
            +  L  +  +                    +      G +            VI +   +
Sbjct: 822  SIALNAMPAEGYSSGEAIRAVQETATRVLPANYDFDFGGLAREESNQSNTTIVIFAICLL 881

Query: 681  LIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            ++Y+    +   ++     + ++   +  +  F  L G+E N+     ++ LIG      
Sbjct: 882  MVYLLLSALYESFFVPFAVLLSVPAGLMGSFLFAKLLGLENNIYLQTGLIMLIGLLAKTA 941

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ +   +  +     +S       +  + L   + T++     ++P+ +    G +  
Sbjct: 942  ILLTEYATERRRA---GMSLTSAALIAAKDRLRPILMTALTMIFGMVPLMLASGVGANGN 998

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             S    +  G++V   + +FI   + +     + K
Sbjct: 999  SSLGTGVVGGMLVGTLALLFIVPAMFIVFQAIQEK 1033


>gi|70725353|ref|YP_252267.1| hypothetical protein SH0352 [Staphylococcus haemolyticus JCSC1435]
 gi|68446077|dbj|BAE03661.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 889

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 87/629 (13%), Positives = 200/629 (31%), Gaps = 58/629 (9%)

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
           H +   A+     H    D   ++   +   +   +       +        +  +N   
Sbjct: 64  HQDSEKASMKIVFHSNKNDGLNNKDTKKDIEDALDNIRQNDDYIQNISNPYDSGQVNDEG 123

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            +  A +S           +  +    L    +    +      G+ +   G  + + G+
Sbjct: 124 DTAIANVSYVVPQTGLKDSSKHIIDKELKDVTDNHNVQIEKTQGGAMNAEPGGTSEIVGI 183

Query: 373 VL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLA 427
           V+  ++L +         +   S  + +  ++ +++LL     +P+      +++G+ + 
Sbjct: 184 VVAFVILLITFGSLIAAGMPIISAIIGLGSSVGIIALLTYIFDIPNFTLTLAVMIGLAVG 243

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           +D ++ +  R +E  +K      ++      A S +  + +T +IA   L   G   +  
Sbjct: 244 IDYSLFILFRFKELKKKGVDTVEAIATAVGTAGSAVIFAGLTVMIAVCGLSLVGIDFLAV 303

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
                 +S+L ++  A++++ A++    +  K+K                  +       
Sbjct: 304 MGFASAISVLFAVLAALTLLPALISIFHKSIKIKDKPSKSKDPKDHPWAKFIVGKPVIAV 363

Query: 548 WGVGISILFSICSICLLFT--------------------HGLNYGIDFKGGIQLGVLANR 587
               I ++ +   +  +                         N+G  + G I + V    
Sbjct: 364 IVSLIILILAAIPVSGMRLGIPDDSLKPTDSSEYKAYKLISDNFGEGYNGQIVMLVNTKD 423

Query: 588 -------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                    DL+ +RS+LE +   D   +    + N        P           +V  
Sbjct: 424 GGSKSTIERDLNNMRSDLEDIDNVDTVSKAQLTDNNNYALFTIIPEKGPNSQSTENLVYD 483

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG--------IVGVIISAIAMLIYIWIRFKWYF 692
                       + +      S   I           +   +I  +A  + +++      
Sbjct: 484 LRDYHSQAQEKYDYDTEISGQSVINIDMSEKLNNAIPVFAGVIVVLAFFLLMFVFRSILV 543

Query: 693 ALGAITTLILDITKTLGFF----------ALFGIEFNLT-----AVAAVLTLIGYSVNDK 737
            L A+   IL +  TLGF           +LFGIE          V  +  L G +++ +
Sbjct: 544 PLKAVLGFILSLMATLGFTTLVIQHGFMGSLFGIENTGPLLAFLPVITIGLLFGLAIDYE 603

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           + +  R+ +    Y+ +      I   I E+    V  ++  F   +       S I S 
Sbjct: 604 LFLMTRVHEE---YSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFVFQDDSAIKSM 660

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I + FG++  A        P L  ++  
Sbjct: 661 GIALGFGVLFDAFVVRMTLIPALTKLFGK 689


>gi|293603189|ref|ZP_06685622.1| multidrug RND efflux transporter [Achromobacter piechaudii ATCC
           43553]
 gi|292818420|gb|EFF77468.1| multidrug RND efflux transporter [Achromobacter piechaudii ATCC
           43553]
          Length = 1037

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 152/550 (27%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GLL           +   P                     L    
Sbjct: 10  RPVATTLLSMAVVMAGLLA-----FFLLPVAPLPQVDIPTI---------SVSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S  Q   +ITL F  SR     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGSIAGVTEMTSSSTQGSTRITLQFDLSRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    + N     +    + +++   +        +           ++   +   +
Sbjct: 116 RSLLPTGLRSNPTYHKSNPSDAPIMT-LALTSDTLGQGQLYDIASTIVAQKLSQVDGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +     P  L     +  ++                              
Sbjct: 175 VTVGGSSLPAVRVTVLPGALANRGVSLDQLRSTLAN--------------------ANAN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V  +  +      +      +    +                 +   +  +     
Sbjct: 215 RPKGVLENDRYHWQIMVSDQLSRAEQYRPLIVAWKDGAPVRVSDVAKVEDSVEDLYQTGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +A  +   T+        ML++         V +    +   S    
Sbjct: 275 FNDRKAILMILRRQADANIIETVNAVRAQLPMLQSLMPADVNMTVAQDRTPSIRASLHEA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+ + +   +  ++   ++ +++I T  ++ + G TL   S+  +++
Sbjct: 335 ELTLIIAVGLVVLVVLLFLRRWRAAIIPSVAVPVSLIGTFCIMYMCGFTLNTISLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I        S   +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIMRHVENGMSPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+  +I++S+  ++++   M   ++R +   +     L+R+        
Sbjct: 455 VVGRLFREFAVTLSAAIMVSLVVSLTLTPMMCARLLRPEPKDAKPPGRLARWSERGFEAM 514

Query: 540 IQFMRARFWG 549
               R     
Sbjct: 515 QDGYRRSLRW 524



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 82/219 (37%), Gaps = 6/219 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            ++R Q           V   +    + +     +   +   P I   L    +  +I  
Sbjct: 283 MILRRQADANIIETVNAVRAQLPMLQSLMPADVNMTVAQDRTPSIRASLHEAELTLIIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + +L+ +    +W  A+     + + +  T     + G   N  ++ A++   G+ V+D
Sbjct: 343 GLVVLVVLLFLRRWRAAIIPSVAVPVSLIGTFCIMYMCGFTLNTISLMALIVATGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +VV + +   M+     +S      +   E     +  S++     +P+ + GG V   
Sbjct: 403 AIVVLENI---MRHVENGMSPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGGVVGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              FA+ ++  I+V+   S+ +   +   +     K+A+
Sbjct: 460 FREFAVTLSAAIMVSLVVSLTLTPMMCARLLRPEPKDAK 498



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 70/162 (43%), Gaps = 6/162 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
               ++ + + M I + I ++ +   L  ++TL       L    L   +F L A+  V  
Sbjct: 858  PWLILAALVTMYIVLGILYESFVHPLTILSTLPSAGLGALLALLLVRQDFTLIALIGVFL 917

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ D   +  ++    ++ RD I ++        + T+MAA    LP+ +
Sbjct: 918  LIGIVKKNAIMMVDFALEAQRV--QGLAPRDAIFQACLTRFRPIMMTTMAAIFGALPLVM 975

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                G  +     I +  G++++   +++    + L++  +R
Sbjct: 976  ATGAGVEMRQPLGITIVGGLILSQILTLYTTPVVYLYLDRFR 1017


>gi|239907440|ref|YP_002954181.1| efflux system protein [Desulfovibrio magneticus RS-1]
 gi|239797306|dbj|BAH76295.1| efflux system protein [Desulfovibrio magneticus RS-1]
          Length = 1024

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/636 (8%), Positives = 148/636 (23%), Gaps = 44/636 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L + +   G++           +   PS                  + +   
Sbjct: 7   KRPVATTLLMAALVFFGIVS-----YFSLPISEMPSIDFPT-------------IQVTAS 48

Query: 62  EDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +        +   + +        +       ITL F  SR  +     V  
Sbjct: 49  LPGADPETMASAVATPLERQFTSISGLQSMSSANSLGTTTITLQFDLSRNIDGAGTDVLT 108

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
           ++      L  +                ++               +         +I + 
Sbjct: 109 YINAAQGSLPTNMPSPPTFQKVNPADMPIIYIRVSSD-TMPLFRVTNYAKVYIAQRISMI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q             + +P +L  L     +++         +            + 
Sbjct: 168 NGVAQVAVYGDQTYSPRVQVNPDKLAALSIGIDEVANAFNNETVLQPTGSLYGIDRLFTI 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +                                                      
Sbjct: 228 KAQGQLTSAT--------------------AYNRQIIAYRNGNPVRLQDVGQTIDSTIND 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                 A  +    ++    +   + A   P            +   
Sbjct: 268 KNAAFFDQQQGIVIAVKRAAGTNTIQLVDAIRAMIPSIEATLPPSVKLEFLYDRSKSIKE 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +    + T  +   LV+IV+++ +      ++A  ++   +I TL+L+   G ++   S 
Sbjct: 328 AIDDVQFTLLLSISLVVIVVYLFLNNLPATIIASLALPTALIGTLSLMVFFGFSIDNLSA 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L +G  VD  I++ E I       + +  +   G  +   TI    ++  +  + +
Sbjct: 388 MAIILAVGFVVDDAIVMIENIVRHTEMGKKIMQASLDGARQIGFTIISMTLSLAVVFIPI 447

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            F  G   R          L  + +   +  ++   +        I  +     ++    
Sbjct: 448 MFMAGILGRVLNEMAITITLCILVSG-FVTLSLTPMMCSRFLSGKISESGKIFKWIEHGY 506

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                +  RF    + +  +I  +       +  G        +          +   + 
Sbjct: 507 EKTLHLALRFRFFVMILSMAILGLTFWLFTVVPTGFIPATDSGIFYAFGMAEQSASFETM 566

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            + +      F        F+  +     ++     
Sbjct: 567 KDRVLKVGRVFMADPDVFKFIGVVGVGGPNTSMNNA 602



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 83/245 (33%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
               +      PV L  V   ++S      +      +   +   +    +++     + 
Sbjct: 240 NRQIIAYRNGNPVRLQDVGQTIDSTINDKNAAFFDQQQGIVIAVKRAAGTNTIQLVDAIR 299

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
            +   I   +P S          K  +E I      +++S   ++I +++        + 
Sbjct: 300 AMIPSIEATLPPSVKLEFLYDRSKSIKEAIDDVQFTLLLSISLVVIVVYLFLNNLPATII 359

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A   L   +  TL     FG   +  +  A++  +G+ V+D +V+ + +   ++      
Sbjct: 360 ASLALPTALIGTLSLMVFFGFSIDNLSAMAIILAVGFVVDDAIVMIENI---VRHTEMGK 416

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSS 812
                      +     +  +++  +  +P+       G V+   AI +   I+V+   +
Sbjct: 417 KIMQASLDGARQIGFTIISMTLSLAVVFIPIMFMAGILGRVLNEMAITITLCILVSGFVT 476

Query: 813 IFIAA 817
           + +  
Sbjct: 477 LSLTP 481



 Score = 44.7 bits (103), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 50/118 (42%), Gaps = 6/118 (5%)

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            +FG + +L     ++ LIG    + ++V D   +         S  D + +         
Sbjct: 897  VFGRQLDLYGFIGIIMLIGIVKKNSIMVIDFAIE---AEKEGKSPFDAVFEGCIVRFRPI 953

Query: 773  VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + T++AA   + P+A+    GG       + +A G+V++   ++++      ++ + +
Sbjct: 954  MMTTVAAIAGIFPIALGMGAGGDARQPLGLVVAGGLVISQMVTLYLTPCFYTYMDELQ 1011


>gi|218530695|ref|YP_002421511.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
 gi|218522998|gb|ACK83583.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
          Length = 1104

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 58/466 (12%), Positives = 137/466 (29%), Gaps = 28/466 (6%)

Query: 56  LVLEVDEDDFVNGFL-QMYSDELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           ++++          +    +  L      +        +      +I L F  +R  +  
Sbjct: 45  ILVQAQMAGASPETMATTVAAPLERRLGAIADVNEMTSTSSTGTVRIVLLFGLNRDIDGA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
           A  V   +    + L    + N          S +L    +        +          
Sbjct: 105 ARDVQAAINAARADLPTSLRTNPTYRKFNPADSPILI-LGLTSDTLTPGQLYDSAATIVQ 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++   E           L  +  E DP+ L         +       N +         
Sbjct: 164 QRMSQIEGVGNVDIGGSSLPAVRVELDPTALFHYGIGLEGIRAGLASANANSP------- 216

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                            ++G       AN   +      DI                 + 
Sbjct: 217 -------------KGDIVAGDRRYQLYANDQGRQASDYRDIVVAYRNGAAVRLADVGEVV 263

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +    +  ++            +   +   T+E         +A         +    
Sbjct: 264 DSVEDKRNLGLVDGKPGVILFIYKEPGSNVVETVERVRAAIPQAKAALPGDIDLNISGDR 323

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S +  + T  I   LV+ V F+ +   +  L+   ++ +++I T A + +L  +
Sbjct: 324 SATIRASLASTEETLIIAVILVIFVTFIFLRSWRATLIPAVAVPISIIGTFAAMWILDYS 383

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L + S+  +++  G  VD  I+V E I+      +    +  +G      T+   +++ +
Sbjct: 384 LDILSLMALIIATGFVVDDAIVVLENIQRHIEAGKPRVEAALLGAREVGFTVVSMSLSLI 443

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              + +   G   G   + FA+T+ ++IL+S+  +++    M   +
Sbjct: 444 AVFLPILLMGGIVGRLFQEFAVTLSMAILVSLVLSLTTTPMMCALL 489



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/209 (13%), Positives = 69/209 (33%), Gaps = 7/209 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
            +  +          RV   + +    +     +  +      I   L       +I   
Sbjct: 284 FIYKEPGSNVVETVERVRAAIPQAKAALPGDIDLNISGDRSATIRASLASTEETLIIAVI 343

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + + +       W   L     + + I  T     +     ++ ++ A++   G+ V+D 
Sbjct: 344 LVIFVTFIFLRSWRATLIPAVAVPISIIGTFAAMWILDYSLDILSLMALIIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +         +       E     V  S++     LP+ + GG V    
Sbjct: 404 IVVLENI---QRHIEAGKPRVEAALLGAREVGFTVVSMSLSLIAVFLPILLMGGIVGRLF 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             FA+ ++  I+V+   S+    P++  +
Sbjct: 461 QEFAVTLSMAILVSLVLSL-TTTPMMCAL 488



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 16/144 (11%)

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +GAI  L+             G EF + A+ AV  LIG    + +++ D         
Sbjct: 963  AGIGAIVALLT-----------TGTEFTIVALIAVFLLIGIVKKNAILMID--FAIDAER 1009

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVA 808
               ++  + I ++        + T++AA +   P+ V GG    +     I +  G++V+
Sbjct: 1010 NRGLTPGEAIYEACLLRFRPIMMTTLAAILGAAPLIVAGGEGAELRRPLGIAIVGGLIVS 1069

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               +++    + L++   R    R
Sbjct: 1070 QILTLYTTPVVYLYLDRLRLWVKR 1093


>gi|227537925|ref|ZP_03967974.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Sphingobacterium spiritivorum ATCC 33300]
 gi|227242227|gb|EEI92242.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Sphingobacterium spiritivorum ATCC 33300]
          Length = 1052

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/693 (11%), Positives = 183/693 (26%), Gaps = 38/693 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +     LLI     L +  + RFP   P   +  G    GG       + 
Sbjct: 8   RPVMATVISVV-----LLILGIIGLLRLPVTRFPDISPPTVMVSG-SYPGG-------NS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           +  +   +    +++      E I   +       I++ F      +  A  V   +Q  
Sbjct: 55  EAVIRSVVTPLEEQINGVENMEYIKSSASNDGSFSISIIFKQGVNADQAAVNVQNRVQQA 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-SHAIEQSMEIIRQRIDQIGISESTI 181
              L  +  +  L T+ ++   I++     +       +     +    + QI       
Sbjct: 115 TPILPEEVIRMGLTTSKQQNSMIMIFNVYTEDNSKYDELFLQNYVNINVLPQIKRVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    +P ++       A ++      +        G            
Sbjct: 175 QAQVFGIKDYSMRVWLNPQKMATYALIPADINQAISSQSIEAAPGKLGEES--------- 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                    +   +I     G           I           
Sbjct: 226 --------DAALEYVMRYKGKKNQTEEYENIIVKRNGTELVRLRDVARIEFGSINYSGNS 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             + N        +         P    +           +   
Sbjct: 278 TSNGKNAVTVAILQTTGSNANDIEIGVRDVLTDASKTFPPGVKYVNLMSTKERLDEATGQ 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T      LV IV+F+ +   +  ++   ++ + ++ T   L + G T+ + ++  +V
Sbjct: 338 VKSTLIEAFILVFIVVFLFLQDFRSTIIPAIAVPVAIVGTFFFLLVFGFTINVLTLFALV 397

Query: 422 LGIGLAVDSNILVNERIREENR----KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           L IG+ VD  I+V E +  +        +    S     + A  +I        I    +
Sbjct: 398 LAIGIVVDDAIVVVEAVHSKMEGTNLTGKEATHSAMGEITGAVISITLVMSAVFIPIGFM 457

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK--MKSIDINPLSRFFLIP 535
               G   + FA T+ ++I+IS   A+++  A+   +++       +             
Sbjct: 458 TGSSGIFYKQFAYTLAIAIIISAVNALTLTPALCALLLKNNHAAGHTGPAAKAGFKKRFF 517

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 F       +      +           L  G+     +          D   + 
Sbjct: 518 TAFNAGFDNLTGKYIKGLKFLTAKKWIGAGFILLITGVAGWLMMSTPKSFVPMEDDGFII 577

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            NL       +       E+   +  + +  ++ +      ++    +    +  I+   
Sbjct: 578 YNLSMPPGTALDRTTATAERIDAILEKTESVETSSTITGFNILSNSASPAYAMGFIKLKP 637

Query: 656 IVGPKISRELIR-KGIVGVIISAIAMLIYIWIR 687
                  +++    GI+    +AI     +  R
Sbjct: 638 KKERGKVQDIDEIMGILSGQFAAIKEGTVMAFR 670



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 85/246 (34%), Gaps = 9/246 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              +L  +R              N        V +            +   V+  +T+  
Sbjct: 253 NGTELVRLRDVARIEFGSINYSGNSTSNGKNAVTVAILQTTGSNANDIEIGVRDVLTDAS 312

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
                    +        L          +I + I + I +++    +   +     + +
Sbjct: 313 KTFPPGVKYVNLMSTKERLDEATGQVKSTLIEAFILVFIVVFLFLQDFRSTIIPAIAVPV 372

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T  F  +FG   N+  + A++  IG  V+D +VV + +    K+  T+++ ++   
Sbjct: 373 AIVGTFFFLLVFGFTINVLTLFALVLAIGIVVDDAIVVVEAVH--SKMEGTNLTGKEATH 430

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++ E  G  +  ++      +P+    GS       FA  +A  I+++A +++ +   +
Sbjct: 431 SAMGEITGAVISITLVMSAVFIPIGFMTGSSGIFYKQFAYTLAIAIIISAVNALTLTPAL 490

Query: 820 LLFIYD 825
              +  
Sbjct: 491 CALLLK 496



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 60/163 (36%), Gaps = 9/163 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +I++   + +Y  +      +   L  + ++   I          G++ N+     ++ L
Sbjct: 878  IILTLCLLFVYFLLAAQYESYLLPLSVLLSIPTGIIGAFASIKAIGLDNNIYVQVGLIML 937

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G    + +++ +     ++      S +D         L   + TS+A  + ++P+ V 
Sbjct: 938  VGLLAKNAILIVEFA---VQRRAAGSSIKDSAIDGARSRLRPIIMTSLAFIVGMIPLMVA 994

Query: 790  GGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G       S +   A G++      +F+   + +     + K
Sbjct: 995  TGGSAMGNRSISTGAAIGMLTGVIFGVFVIPLLYMLFQYLQEK 1037


>gi|21242804|ref|NP_642386.1| transport protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108289|gb|AAM36922.1| transport protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 1159

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 79/602 (13%), Positives = 169/602 (28%), Gaps = 52/602 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 20  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 66  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 125

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ K  +L+        I+        +  +    I                ++
Sbjct: 126 L--SLPLETKPPVLLRFNPSTEPIMRLALSPKQAPASDTDAIRQLTGLRRYADEDLKKKL 183

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 184 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDNVITRLKEENVNISGGRLEEGSQR 243

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 244 YLVRTVNQFVDLDEIRNMLVTTQSSSGSAAEAAMQQMYAIAASTGSQAALAAAAEVQSTS 303

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              S    G           + +          L      +     +   +   T     
Sbjct: 304 SSSSSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKEAVELAIYKEGDANTVSTAAALR 363

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 364 KRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 423

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +  SV 
Sbjct: 424 ISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLSVL 483

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
            +   G       +  S +T +   + L F     G   R  A+T+ ++I IS+  ++++
Sbjct: 484 DAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLVVSMTL 543

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           +  M+  +     M   D     ++      +       R  G  +   F   +  ++  
Sbjct: 544 IP-MLSSLKGAPPMAFPDEPSHPQWQPEQRWLKPVAAGRRGAGASMRYGFFGAAWAVVKV 602

Query: 567 HG 568
             
Sbjct: 603 WR 604



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 6/207 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           + + +++    +     I   E     I   +       VI 
Sbjct: 344 ELAIYKEGDANTVSTAAALRKRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIG 403

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 404 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVD 463

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +S  D       E     + +++      LP+       G 
Sbjct: 464 DSIVVLESI---AKARERGLSVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 520

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    A+ +A  I ++   S+ +   +
Sbjct: 521 LFRDQALTVAIAIAISLVVSMTLIPML 547



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +     D      V E+      + +      +  
Sbjct: 900  AAVAEVLATTGPSEIHRADQTRVAIVSASLKDIDLGGAVREVETMVRKDPLAAGVGMHIG 959

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 960  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 1018

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+G    + +++ D++    +L    +  R+ + +     L   + 
Sbjct: 1019 GKPISVVVFIGLILLVGLVTKNAIILIDKVN---QLREDGVPKREALIEGARSRLRPIIM 1075

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            T++      LP+AV    G  V    AI +  G
Sbjct: 1076 TTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1108


>gi|315500429|ref|YP_004089232.1| acriflavin resistance protein [Asticcacaulis excentricus CB 48]
 gi|315418441|gb|ADU15081.1| acriflavin resistance protein [Asticcacaulis excentricus CB 48]
          Length = 1162

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 61/559 (10%), Positives = 161/559 (28%), Gaps = 40/559 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+ + ++  +G             ++ FP                 +++     
Sbjct: 19  RNPIPTVLFFIVMTIVG-----WGAFQALRINNFPDIDLPVVT--------ATYVQ-SGA 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +         +    +   + F      E   + V   +  
Sbjct: 65  APAELETQVTRRVEDAVSGIGSVKHITSYVNDGVSTTAIEFQLGVDLEKATNDVRNAVAQ 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D +  ++        +++      D +     + S  +      +I  ++   
Sbjct: 125 IRSDLPADVQDPIIRREEASGEALINYIIRGDGLNPE--QLSWFVDNDISKKILANKGVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++  + DP+RL     T A++S      N +  G    V     S     
Sbjct: 183 KLSRIGGVTREIRIQLDPARLAGQGITAAEVSNQLRTTNVNLPGGRLEVGGSEQSIRTLG 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +    +                                   +    +   +  
Sbjct: 243 NAGSVDALRETRIAL--------------------SNGGSVRLGDLGQVIDTWSEPRERA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           S     ++       +R     + +  V   +V     S   
Sbjct: 283 RFNGNEVVGFAVYRSIGSSEVDVADSVRKSMDAIRKAHPNMVIEEVTA-SVDWVKESYLA 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  I A L + V+++ +   +   V+  ++ ++++ T  ++ ++  +  + S+  + 
Sbjct: 342 SMETLLIGAALAVFVVWLFLRDLRATFVSAVAMPMSLLPTFFVMYVINDSFNIVSLLALS 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I    R  +  + +           +  +  T +     + F  
Sbjct: 402 LTIGILVDDAIVEIENIVRHIRDGKKPYDAAIEAADEIGLAVVATTATIIAVFAPVGFMP 461

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+   +S+  S+  A ++   M  +++R    K        + +L     
Sbjct: 462 GIVGQFFKSFAVAACVSVFFSLVVARTLTPLMGAYLMRANPGKEHGDPFWMKSYLSSLRW 521

Query: 539 AIQFMRARFWGVGISILFS 557
            ++        +    +  
Sbjct: 522 GLESPLYWRTLLWTVGITV 540



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 75/250 (30%), Gaps = 10/250 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             ++ +     V L  +   +++        +    E       +      V     +  
Sbjct: 252 ETRIALSNGGSVRLGDLGQVIDTWSEPRERARFNGNEVVGFAVYRSIGSSEVDVADSVRK 311

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
               I +  P   I+        +    +      +I +A+A+ +             + 
Sbjct: 312 SMDAIRKAHPNMVIEEVTASVDWVKESYLASMETLLIGAALAVFVVWLFLRDLRATFVSA 371

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + + +  T     +    FN+ ++ A+   IG  V+D +V  + +   ++        
Sbjct: 372 VAMPMSLLPTFFVMYVINDSFNIVSLLALSLTIGILVDDAIVEIENI---VRHIRDGKKP 428

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
            D   ++ +E     V T+        P+       G    SFA+     +      S+ 
Sbjct: 429 YDAAIEAADEIGLAVVATTATIIAVFAPVGFMPGIVGQFFKSFAVAACVSVFF----SLV 484

Query: 815 IAAPILLFIY 824
           +A  +   + 
Sbjct: 485 VARTLTPLMG 494



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 82/228 (35%), Gaps = 5/228 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +       + V    +  ++ G    Q    +++    ++    + V      + V+  
Sbjct: 891  ELKVPTNTGVPVPLEAVADVRFGSGPIQITRIDRSRTATVKANLPEGVPAGIAQDAVRNL 950

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
                   + +Q       +   E+    +V +    + M + + + F+ +   +  +T L
Sbjct: 951  PIMKNLPAGVQELVTGDQESQAEMATGFMVAIGTGIMLMYVVLVLLFRSFTIPITILTAL 1010

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L          + G   ++ A+  ++ L G +  + +++ +   +        +   D 
Sbjct: 1011 PLSFGGAFFLLLITGKSLSMPALIGLIMLTGIAAKNSILLVEYALE---AINRGMPRMDA 1067

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            +  + ++     + T++A    +LP+A+ G     +F  PMA  ++  
Sbjct: 1068 LMDAAHKRARPILMTTVAMGAGMLPIAI-GWGADVAFRAPMAIAVIGG 1114


>gi|150391362|ref|YP_001321411.1| acriflavin resistance protein [Alkaliphilus metalliredigens QYMF]
 gi|149951224|gb|ABR49752.1| acriflavin resistance protein [Alkaliphilus metalliredigens QYMF]
          Length = 1027

 Score =  145 bits (365), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/618 (11%), Positives = 178/618 (28%), Gaps = 48/618 (7%)

Query: 1   MRNNPWLV--ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MR + W V   +  ++   GLL+     L +  +D  P       +              
Sbjct: 1   MRVSKWAVNRYISVLMVIAGLLLLGGVSLSRLPMDLLPHISIPVAV---------VSTQY 51

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  + G +    +E  + +        S  +  + + + F      +    ++   
Sbjct: 52  PGAGPLEIEGLVTRPVEEAVATVHNVKNMSSSSSEGNSIVIIEFNQGTDMDFATLQMREK 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  +   L  +    +++      + I++   +  +      E    +  Q   +    E
Sbjct: 112 IDLIKGFLPDEVTDPMVLRIDPNALPIMVLGLSGTE---DLSELQSIVESQIKPKFERLE 168

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                  +      +  E DP+ L     T  +++                         
Sbjct: 169 GVASVSVTGGYEEVVEIEVDPNVLTSYGITMEQIATIIRAE------------------- 209

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +       G            +    + ++        R +      +      + 
Sbjct: 210 -NINLPGGEIQQGGQNILLRTIGAFENIGEIENLPILLPTGIRVYLKDISQVQLTTKDIK 268

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +      +     +   +              +    +     +           S
Sbjct: 269 HIAKVNGEPSIRITIQKQPVANTVQVANRINQ-TIQVLEEEIKGIQIVSVIDQSRFITRS 327

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T A    L + +L++ +   +  LV   SI ++++ T AL+   G TL L S+ 
Sbjct: 328 IGNVGRTAAFGGVLAVCILYLFLGNVRTTLVIALSIPISIVTTFALMYFSGMTLNLLSLG 387

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G  LG+G+ VD+ I+V E I     +      S  +G       +  S +T L   + + 
Sbjct: 388 GFALGVGMLVDNGIVVLENIYRFREEGNDPEQSAILGTEEVAMAVTASTLTTLAVFLPIV 447

Query: 479 FFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----------IDI 525
           F  G      R  A+T+  S+L S+  ++++V  +   +++  ++               
Sbjct: 448 FVEGMTAQVFREMALTVTFSLLASLGVSLTLVPMLASKLMKKNRVNGKRTPQQVLGIFHR 507

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       ++      +       ++F++  +         +    +G   + +  
Sbjct: 508 FFKYINEKYGKILSWSLSHRKTILFVTFLIFTVAILLASSMGAEYFPSLDEGTFSVNIRL 567

Query: 586 NRPVDLSVVRSNLESLQI 603
            +   L    + ++ ++ 
Sbjct: 568 PQSATLQETEAVMDEVEG 585



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 75/259 (28%), Gaps = 12/259 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +     V L  +     + +      +        +   +    ++V     +    
Sbjct: 243 PILLPTGIRVYLKDISQVQLTTKDIKHIAKVNGEPSIRITIQKQPVANTVQVANRINQTI 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           + + E +    I +       I+R +   G        +A+ I           L    +
Sbjct: 303 QVLEEEIKGIQIVSVIDQSRFITRSIGNVGRTAAFGGVLAVCILYLFLGNVRTTLVIALS 362

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSIS 756
           + + I  T       G+  NL ++      +G  V++ +VV +   R R+          
Sbjct: 363 IPISIVTTFALMYFSGMTLNLLSLGGFALGVGMLVDNGIVVLENIYRFREE------GND 416

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
                     E       +++      LP+         V    A+ + F ++ +   S+
Sbjct: 417 PEQSAILGTEEVAMAVTASTLTTLAVFLPIVFVEGMTAQVFREMALTVTFSLLASLGVSL 476

Query: 814 FIAAPILLFIYDWRAKNAR 832
            +   +   +      N +
Sbjct: 477 TLVPMLASKLMKKNRVNGK 495



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 78/224 (34%), Gaps = 10/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                         +   + V+  +++KI +    +          +   E I    + VI
Sbjct: 806  DQVRNISVRAALFNRNLSSVVADIEEKIKDYSLPAGYSYEFKGENEQLEEAIDNLTLAVI 865

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
            ++ + + + +  +F  +         + + +  + G  ALF  GI  N+      + L G
Sbjct: 866  LAIMLVYMILAAQFQSFLHPF--TIMMSVPLAFSGGIIALFLAGISINVPGGIGAIVLAG 923

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY---TSMAAFISVLPMAV 788
              VN+ +V+ D +       T   +  D I  +    L   +    T++   + +     
Sbjct: 924  IVVNNGIVLIDYINTLRDHGTHQRN--DSIIIAGKTRLRPIMMTTLTTVLGLLPLAIGFG 981

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G  V    A+ +  G+ +A   ++ +   +   + D   K  +
Sbjct: 982  EGAEVQQPIAVVVIGGLSLATLLTLVVIPVMYSVLDDIAIKVRK 1025


>gi|325923422|ref|ZP_08185084.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
 gi|325546096|gb|EGD17288.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
          Length = 1170

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/570 (12%), Positives = 156/570 (27%), Gaps = 51/570 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 31  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 76

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +    +V   ++ 
Sbjct: 77  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQAGLEVRDKMEA 136

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ K  +L+        I+        +  +    I                ++
Sbjct: 137 L--SLPLETKPPVLLRFNPSTEPIMRLALSPKQAPASDSDAIRQLTGLRRYADEDLKKKL 194

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 195 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDNVITRLKEENVNISGGRLEEGSQR 254

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 255 YLVRTVNQFVDLDEIRNMLVTTQSSSGSAAEAAMQQMYAIAASTGSQAALAAAAEVQSTS 314

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              S    G           + +          L      +     +   +   T     
Sbjct: 315 SSASSSIAGGMPVRLKDVAEVRQGYKEREAIIRLGGKETVELAIYKEGDANTVSTAAALR 374

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 375 KRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 434

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +  SV 
Sbjct: 435 ISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLSVL 494

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
            +   G       +  S +T +   + L F     G   R  A+T+ ++I IS+  ++++
Sbjct: 495 DAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQAMTVAIAIAISLVVSMTL 554

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +  +             + +          
Sbjct: 555 IPMLSSLKGAPPMAFPDEPSHPQWQPEQRW 584



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 67/210 (31%), Gaps = 6/210 (2%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +  +           + + +++    +     I   E     I   +       
Sbjct: 352 ETVELAIYKEGDANTVSTAAALRKRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDA 411

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           VI   +A+LI        +       +L + I  T  F    G+  N+ ++  +    G 
Sbjct: 412 VIGGVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGL 471

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            V+D +VV + +    K     +S  D       E     + +++      LP+      
Sbjct: 472 VVDDSIVVLESI---AKARERGLSVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGI 528

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            G +    A+ +A  I ++   S+ +   +
Sbjct: 529 AGQLFRDQAMTVAIAIAISLVVSMTLIPML 558



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +     D      V E+        +      +  
Sbjct: 911  AAVAEVLATTGPSEIHRADQTRVAIVSASLHDMDLGGAVREVESIVRNNPLAAGVGMHIG 970

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 971  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 1029

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDR---MRKNMKLYTTSISFRDLIDKSINETLGR 771
            G   ++     ++ L+G    + +++ D+   +R+        +  R+ + +     L  
Sbjct: 1030 GKPVSVVVFIGLILLVGLVTKNAIILIDKVNQVREE------GVPKREALIEGARSRLRP 1083

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
             V T++      LP+AV    G  V    AI +  G
Sbjct: 1084 IVMTTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1119


>gi|300871196|ref|YP_003786069.1| acriflavin resistance protein [Brachyspira pilosicoli 95/1000]
 gi|300688897|gb|ADK31568.1| acriflavin resistance protein [Brachyspira pilosicoli 95/1000]
          Length = 1050

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 73/681 (10%), Positives = 191/681 (28%), Gaps = 48/681 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +  +G +      +        P                      E  
Sbjct: 10  KRPVAVFMCIIAVLILGFVSLTKLAVDFLPDMELPYIT--------------VRTEYENA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + +        +  + Q+ + + F            V   + G
Sbjct: 56  GPEEVEKSVTRVVENAVATVSGINSITSTSEEGQSSVFIEFNWGTDLAVATADVREAIDG 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D +   +   +   + ++                   I  Q +++I  +    
Sbjct: 116 IKNSLPDDAESPTVFKFSTDMMPVMEIAFFGTDN---LGALYTLIDNQILNKIEQASGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++  +   +RL         +       N +  G        + +     
Sbjct: 173 RAEIRGGLKTEMKVDLVLNRLHAYGLDINSIVSLLSSENQNLSGGDTYEGVYKYTIRTMG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +I    +   T                               + +  +   +  
Sbjct: 233 EFTTVEDIENTVVALKT-------------------NDTPIKLKDIGRVYQGYSDDSEIV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          + ++  +     ++       L           +   +      S + 
Sbjct: 274 KINGMPAISVSVNKESGGNSVNVSKSVKKQLENL--NLPEGIKYEILFNSADNVNESING 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    +   +I+L + +   K   +   SI +++I+T  L+  +G TL + S++G+V
Sbjct: 332 VLETAWQGSLFAVIILMLYLWNIKTVSIIAISIPISIIITFTLMYFMGITLNIISLSGLV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           LGIG+ VD++I+V E I          + S   G S     I  S +T +   +   F  
Sbjct: 392 LGIGMMVDNSIVVLENIFFYRNSGYGKYSSAINGTSTVALAISASTLTTIAVFLPFLFVE 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   +   IT+ +S++ S+F A+++V  +   ++  KK + +            D +
Sbjct: 452 GQTGQLFKDLCITVTVSMIGSLFVALTVVPMLGARLVTNKKTQFLIPIENFVNKQFHDRV 511

Query: 539 AIQF-------MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
              +       ++ +   +  S+   +  I    T     G       Q  +    PV  
Sbjct: 512 NNIYSFMLNFSIKNKKKVLISSLSVILAVIVFGLTFIGKEGFPTSDEGQFKIDVKMPVGT 571

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
              ++     ++     +    + + +        +  +    +++  K       +   
Sbjct: 572 KSEQTQSFVNRMETDIQEVIGEDFDRMQSRVKSGSEENSAEIRVQLRDKSEGREKSVYEY 631

Query: 652 QNTEIVGPKISRELIRKGIVG 672
                         I    + 
Sbjct: 632 IELTRNVLSSYPAQINIAAIS 652



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 70/192 (36%), Gaps = 7/192 (3%)

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            + E +    + N+     +    ++     G + + I +++Y+W             ++
Sbjct: 308 NLPEGIKYEILFNSADNVNESINGVLETAWQGSLFAVIILMLYLW---NIKTVSIIAISI 364

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + I  T       GI  N+ +++ ++  IG  V++ +VV + +       +    +   
Sbjct: 365 PISIIITFTLMYFMGITLNIISLSGLVLGIGMMVDNSIVVLENIF--FYRNSGYGKYSSA 422

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I+ +    L  S  T +      LP     G     F   +   + V+   S+F+A  ++
Sbjct: 423 INGTSTVALAISAST-LTTIAVFLPFLFVEGQTGQLF-KDLCITVTVSMIGSLFVALTVV 480

Query: 821 LFIYDWRAKNAR 832
             +      N +
Sbjct: 481 PMLGARLVTNKK 492



 Score = 44.7 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 31/152 (20%), Positives = 66/152 (43%), Gaps = 8/152 (5%)

Query: 680  MLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDK 737
            +   +  +F+ + A   +  L +         ALF  G   ++ +    + LIG  VN+ 
Sbjct: 874  VYAIMASQFESFIAPF-VIALAIPFGFAGSLIALFISGQTLSVYSGIGFIVLIGIVVNNG 932

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVI 794
            +V+ D M  N  ++   +S  D   +S    L   + T++   + +LPMA+ GG    + 
Sbjct: 933  IVLIDYM--NQLMHEKHVSGDDAALESGPRRLRPVLMTTLTTILGLLPMALSGGSGNEMY 990

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               +I +  G++++   ++ I   +   I + 
Sbjct: 991  QPLSIAVLGGLLLSTMFTLIIVPTVYAAIRNK 1022


>gi|270159038|ref|ZP_06187694.1| putative cation/multidrug efflux pump protein [Legionella
           longbeachae D-4968]
 gi|289166126|ref|YP_003456264.1| integral membrane protein, AcrB/AcrD/AcrF family [Legionella
           longbeachae NSW150]
 gi|269987377|gb|EEZ93632.1| putative cation/multidrug efflux pump protein [Legionella
           longbeachae D-4968]
 gi|288859299|emb|CBJ13233.1| putative integral membrane protein, AcrB/AcrD/AcrF family
           [Legionella longbeachae NSW150]
          Length = 1022

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 75/672 (11%), Positives = 176/672 (26%), Gaps = 49/672 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +++    +IL  MI  +G+L           L  +P+                       
Sbjct: 8   LKHPVIAIILNCMILLLGIL-----CFNSLPLREYPNISFPVIT---------ISTNYPN 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + ++             + ITL F      E   +      +
Sbjct: 54  ASPELVESVVTNPLEEQLAGVEGLESITSRSNTGNSYITLRFRPGMPMEKALNATHEAAR 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L    K  ++      +         ++    +  E +        +     +  
Sbjct: 114 LAQAQLPAAVKAPVIERQKHSDGLP-FIGIALESSSLNFGELTHYANLNLKNVFRSLKGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                          + D  +L        +++        S     +  +     D   
Sbjct: 173 SSVEVWG-QPFTYTIKFDQRKLHAYGINVDEVAHAIANNRLSLPAGNYQNKIPTTLD--- 228

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                               F+ KT +   ++          F  +   +          
Sbjct: 229 --------------------FELKTPEDYENLVIKTQNHHPVFLKSLAQVQLTTDNNQFR 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          +     +     +        L           +          S  
Sbjct: 269 VKVNGHSGLVLAINRSNDANPIDVSQNVRKELKALEKNLPEDLKINIIIDQSEFIQASLK 328

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T      LVL ++F+ +   +  ++   +I +++  +L  L + G ++   ++  +
Sbjct: 329 NIQSTILESIFLVLAIIFIFLRNLRATIIPLIAIPISLCGSLLFLKIAGFSINQMTLLAM 388

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +GL VD  I+V E I     +  S   +   G  +    I    +T       + F 
Sbjct: 389 VLAVGLVVDDAIIVLENIWRHIEEGLSPMNAASQGAKQIGFAIIAMTLTLTSVYAPIGFI 448

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     FA+ +  S+ IS   A+++   M    +     +   I   +   L    
Sbjct: 449 DGLLGQLFIEFAVALAGSVFISGVVALTLSPLMCATFLHKNTKQLWPIIDSALGHLSQYY 508

Query: 538 ---IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              + I   R +     + + FS   +      G     + +G I +        +L  +
Sbjct: 509 YKILNIIIYRKKTILFILVLSFSSSLLFYKIMPGETAPKEDRGLIGVYTPPISGDNLDTM 568

Query: 595 RSNLESLQIGDISFQNFDGE----KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             N + +Q                 ++   +         + R  E +   +   V    
Sbjct: 569 EQNTKRVQQSIGKIPEAQNTLTFLGDWGSSIVIPLKSHQQRERSAEQIIHTLKPKVEQLP 628

Query: 651 IQNTEIVGPKIS 662
             +  +      
Sbjct: 629 SIDASVWSWDSG 640



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/210 (10%), Positives = 75/210 (35%), Gaps = 9/210 (4%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               S    + L+ ++K + E + ++ I +         + +    +  + +    + I+
Sbjct: 289 PIDVSQNVRKELKALEKNLPEDLKINIIIDQSEFIQASLKNIQSTILESIFLVLAIIFIF 348

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +         +  +  + + +  +L F  + G   N   + A++  +G  V+D ++V + 
Sbjct: 349 L---RNLRATIIPLIAIPISLCGSLLFLKIAGFSINQMTLLAMVLAVGLVVDDAIIVLEN 405

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIP 800
           +    +     +S  +   +   +     +  ++       P+       G +   FA+ 
Sbjct: 406 I---WRHIEEGLSPMNAASQGAKQIGFAIIAMTLTLTSVYAPIGFIDGLLGQLFIEFAVA 462

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +A  + ++   ++ ++  +         K 
Sbjct: 463 LAGSVFISGVVALTLSPLMCATFLHKNTKQ 492



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 81/260 (31%), Gaps = 18/260 (6%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
               S  R +L S+       Q    E    +R          +      + K +      
Sbjct: 758  TTPSGKRISLSSVAQMKRRAQPTALEHVNQMRSTTLYAQLPERQSFKNGMDKLLKSAKEN 817

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY--IWIRFK-WYFALGAITTLILDIT 705
               Q                  + ++     + IY  +  +F+ + + L  + T+ L   
Sbjct: 818  LPSQYKLSWSGSAKAYNESSQTMLLLFVLSLLFIYAILAAQFENFIYPLIILFTVPLACF 877

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L F  L G   N+     ++TL+G      +++ +      +L     +  D I KS 
Sbjct: 878  GALLFAYLLGQSLNIYTQVGLVTLVGLISKHGILIVEFAN---QLQKEGFALTDAIKKSC 934

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T+ A     +P+ +    G     +  I +  G+ +    ++F+   +   
Sbjct: 935  ALRLRPILMTTGAMVFGAIPLVLSHDAGSEARHAIGIVLIGGLCIGTLFTLFVLPTVYFM 994

Query: 823  ---------IYDWRAKNARI 833
                         ++K  ++
Sbjct: 995  ISQSIANANFEKLKSKQVKL 1014


>gi|323488816|ref|ZP_08094056.1| cation efflux system [Planococcus donghaensis MPA1U2]
 gi|323397514|gb|EGA90320.1| cation efflux system [Planococcus donghaensis MPA1U2]
          Length = 1019

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 74/603 (12%), Positives = 178/603 (29%), Gaps = 42/603 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV-LEV 60
           +   + +++  ++  +G++        +  +   P   P            G  +     
Sbjct: 9   KRPVFTIVIMFLVIILGIVS-----FTRIPITLIPELNPPI----------GVVVTNYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V+  +    +   + L        + ++  N I L F  S   +++   +   + 
Sbjct: 54  ASPTEVSEKITKPLEANLATLPGIKSIQSNSQEGSNFILLEFDWSTDIDDVQPDIAQRID 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + +  D      +     +  I+          +     + E       ++  +E  
Sbjct: 114 Q--TPIPDDSNDPRFLKFDPAQFPILQLSLRSSNPDADVRVIADE----LETELRQTEGV 167

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  ++ ++  E D + L +     + +       N S  G        R+     
Sbjct: 168 ASVNISGSLIEEIQIELDQAALEERGLQQSDVVQLIQANNISLPGEPIETEDGRNLTTRI 227

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                 VE                  + +V       G     +   +          + 
Sbjct: 228 ISTLTSVE----------------EIRNLVLTIDPLEGDNITIDDVANVEISERQSSSET 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           R    P +  +        + + +      L  +L           +          +  
Sbjct: 272 RTNEEPAVLLSALQESQANTADVSDAFQKRLDELLSEDRFEGVKADILFDQGDYVKLAIG 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +     ++VLF  +   K  ++   +I  +VI+T  L+      L + ++  +
Sbjct: 332 NIGQTLVLGGIFAMLVLFYFLRGIKSPIIIGVAIPYSVIVTFVLMFFADFALNILTLGAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            LGIG+ VD+ I+V E I       ++   +   G       I  S +T +   + + F 
Sbjct: 392 ALGIGMLVDNAIVVIENIERHLAMGKNAKKAASEGAKEVSGAIIASTLTTVAVFIPVIFI 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G     FA+T+  S+  S+  A++++  M   ++     K       SR     + 
Sbjct: 452 SGLIGEIFFEFALTISFSLFASLAVALTVIPMMASRMLGKPGSKPKVQKDTSRSVKAFEG 511

Query: 538 IAIQFMRARF-WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
             I  +R R        +L  + +  ++           +G + + V        +    
Sbjct: 512 SVIWALRNRIVVLFTAFVLLIVGAFGVMQVGTEFIPATDEGFVSVSVELENGSSRTATNE 571

Query: 597 NLE 599
            ++
Sbjct: 572 VVD 574



 Score = 89.8 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 97/242 (40%), Gaps = 9/242 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L  +++          ++   V    Q   S+    + + V  ++  +        + 
Sbjct: 781  QELADIEVAQGPVSIQRVDQADSVSFTLQHQSSITLGDMSDQVDAELEALNLDDNTLVSF 840

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL-ILDITKTLGFFAL 713
                ++    I    + V+++ + + I +  +F+ + + L  + T+ ++ I   +  F +
Sbjct: 841  GGDRELLDNSINDMSLAVLLAIVLVYIAMAAQFESFKYPLVIMFTVPLMAIGVAIALF-I 899

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++TAV  +L L+G  VN+ +V+ D +    +     +   D I  S+++     +
Sbjct: 900  TQTPVSITAVIGLLVLVGIVVNNGIVLVDYIN---QRKEDGMGSYDAIVTSVHDRRRPIL 956

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T++   + +LP+A+    G  +     I +  G++ A   S+++   +   +     + 
Sbjct: 957  MTALTTILGLLPLAIGIGEGTEINQPMGITVIGGLISATLLSLYVVPIVYSLLDRQTRRM 1016

Query: 831  AR 832
             +
Sbjct: 1017 NK 1018



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 78/245 (31%), Gaps = 15/245 (6%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D   +            S       +   V L            V +  +K++ E++   
Sbjct: 250 DNITIDDVANVEISERQSSSETRTNEEPAVLLSALQESQANTADVSDAFQKRLDELLSED 309

Query: 650 TIQNTEI-----VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             +  +       G  +   +   G   V+    AML+  +        +     +   +
Sbjct: 310 RFEGVKADILFDQGDYVKLAIGNIGQTLVLGGIFAMLVLFYFLRGIKSPIIIGVAIPYSV 369

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T           N+  + A+   IG  V++ +VV + +    +      + +    + 
Sbjct: 370 IVTFVLMFFADFALNILTLGALALGIGMLVDNAIVVIENI---ERHLAMGKNAKKAASEG 426

Query: 765 INETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             E  G  + +++      +  + + G  G +   FA+ ++F    +  +S+ +A  ++ 
Sbjct: 427 AKEVSGAIIASTLTTVAVFIPVIFISGLIGEIFFEFALTISF----SLFASLAVALTVIP 482

Query: 822 FIYDW 826
            +   
Sbjct: 483 MMASR 487


>gi|90424517|ref|YP_532887.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
 gi|90106531|gb|ABD88568.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
          Length = 1027

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 70/583 (12%), Positives = 182/583 (31%), Gaps = 39/583 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+     IL+ ++   GL+        Q  L+  P                   +     
Sbjct: 10  RHPVPTTILFVLLTLSGLV-----GFSQLRLNNMPDMDIPTVT---------VTVRWAGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +  + ++  + L        ++ +  +   + FA     +  ++ V   +  
Sbjct: 56  APTEIETQITRFIEDSVAGLGAVDHVRSTINEGLSMTMVEFAIGTDIDRASNDVRDAVVS 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + SKL       ++        +I+     +D       + S  I               
Sbjct: 116 IRSKLPQAALDPMIRRVDATGQAILT--FVVDAPGMAPDDLSWLIDNDVAKAALAVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S  +  ++  + DP RL  L  T  ++S        ++ G    +  +  +     
Sbjct: 174 RISRSGGVDAEITIKLDPDRLMGLGLTAVEVSDQVRAQTITEPGGRAALGGMEQAIRALG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V D   +  + +                         R        ++ +  A      
Sbjct: 234 SVADVGRLEDLRIA--------------------FSDGRSVKLSELGSVERSWAEPRQRA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +                        A   A    +++  V         G D+ 
Sbjct: 274 RLNNREVVGFNVYRAVGSGEFAVTRDVRKRMAEFTAAHPGVRILEVTSSTDAVVEGYDAA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   L ++V+++ +   +  L++  ++ L++I T A+++ L  +L   ++  I 
Sbjct: 334 IE-ALWLGGLLAVLVVWLFLRDIRATLISCAALPLSLIPTFAVMAALNQSLNNITLLAIA 392

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L +G+ VD  I+  E I    R+  + V+ +           +  +    ++    +   
Sbjct: 393 LVVGILVDDAIVEIENIVRHVRQSGKRVYDAAIDAADEIGLAVVATTFAIIVVFAPVGLM 452

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G   + F     +++  S+F ++ + R +   +  +    +   +    +      I  
Sbjct: 453 PGIPGQFF-KAFSIAVCTSVFFSLIVARLLTPLMAAFLLKANHSEHGEPAWVRRYTSILA 511

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +R R+  +G  ++F + S+ L+ +   ++      G  + +
Sbjct: 512 WTLRHRWITIGAGVVFFVASLALVPSLPADFMPAADRGRSVVI 554



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 7/161 (4%)

Query: 667 RKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              I  + +   +A+L+           L +   L L +  T    A      N   + A
Sbjct: 331 DAAIEALWLGGLLAVLVVWLFLRDIRATLISCAALPLSLIPTFAVMAALNQSLNNITLLA 390

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +  ++G  V+D +V  + + ++++         D    + +E     V T+ A  +   P
Sbjct: 391 IALVVGILVDDAIVEIENIVRHVRQSGKR--VYDAAIDAADEIGLAVVATTFAIIVVFAP 448

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIA---APILLFI 823
           + +  G     F    +  +  +   S+ +A    P++   
Sbjct: 449 VGLMPGIPGQFF-KAFSIAVCTSVFFSLIVARLLTPLMAAF 488



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 5/119 (4%)

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             +L  +  +L L+G +  + +++ +     +      +     +  +  +     V T++
Sbjct: 902  ISLPVLIGLLMLMGIAAKNSILLVE--YAIVAQRDGGVDRVQALLDAARKRARPIVMTTV 959

Query: 778  AAFISVLPMAV-WGGSVIG--SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            A    +LP+A   G         AI +  G+  +   S+         + D     A++
Sbjct: 960  AMSAGMLPIAFGMGADAERRAPMAIAVIGGLFSSTILSLVYVPAFFTIMDDLSCWIAKL 1018


>gi|289678144|ref|ZP_06499034.1| acriflavin resistance protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 668

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 65/471 (13%), Positives = 135/471 (28%), Gaps = 24/471 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +   S +        S       +TL F  ++  +  A 
Sbjct: 10  VTAQLPGASPETMASSVATPLEVQFSAIPGMTQMTSSSALGSTNLTLQFTLNKSIDTAAQ 69

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L  D              S VL  +    +I    E S         Q
Sbjct: 70  EVQAAINTAAGRLPADLPNLPTWRKVNPADSPVLILSVSSSLIPG-TELSDVTETILARQ 128

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   E   Q   + +    +  +  P +L  L  T A +                     
Sbjct: 129 LSQIEGVGQVFITGQQRPAIRVQAAPEKLAALGLTLADIRQAV----------------- 171

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +          ++  ++N      +    +                 +   
Sbjct: 172 ---QQTSLNLAKGALYGKDSISTLSSNDQLFKPQDYAQLIVSYKNGAPVQLKDVARVVAG 228

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                                 +   +   T++        L+          V      
Sbjct: 229 SENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQGELPRLQEMLPASVDVSVLNDRTR 288

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  I   LV+ V+ + +      L+    + +++I + A++ L G +L 
Sbjct: 289 TIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSAVLGVSLIASFAMMYLFGFSLN 348

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  IV+ +G  VD  I+V E I       Q +  +   G      T+   + + + A
Sbjct: 349 NLTLVAIVVAVGFVVDDAIVVVENIHRHLEAGQGMREAAIKGSGEIGFTVVSISFSLVAA 408

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            + L F G   G   + FA+T   +ILIS+  ++++   +    +R     
Sbjct: 409 FIPLLFMGGVVGRLFKEFALTATATILISVVVSLTLAPTLAALFMRAPTHH 459



 Score = 84.7 bits (207), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 89/250 (35%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ ++ ++
Sbjct: 208 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQGEL 267

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 268 PRLQEMLPASVDVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSA 327

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 328 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 384

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 385 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 444

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 445 APTLAALFMR 454


>gi|254443679|ref|ZP_05057155.1| RND transporter, HAE1/HME family, permease protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198257987|gb|EDY82295.1| RND transporter, HAE1/HME family, permease protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 1046

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 82/678 (12%), Positives = 198/678 (29%), Gaps = 49/678 (7%)

Query: 2   RNNPWLVILYSMICCIG--LLIALPNFLPQSMLDRFP----SAMPKNRISLGLDLRGGSH 55
           R     +++  +I   G   +           + ++P    + +  N   +G D      
Sbjct: 14  RRPVLAIVVNLVIIIAGGQAIYTATQGGEGFTVRQYPRSENAVVTINTPYIGAD------ 67

Query: 56  LVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                   + V GF+    +   +          + +Q  + I+     +        ++
Sbjct: 68  -------AELVRGFITAPLERAIAAADSIDYLESTSQQSFSSISARLKLNADATKALAEI 120

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKE-ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +  +    + L  + +  ++   T     + +      D++  +  E +  ++R     +
Sbjct: 121 SSKVDQARADLPPEAEVPVINIETADTQFASMYLSFGSDKLQRN--EVTDYLVRVIQPAL 178

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
              E   +          +    DP++L     + +++       N           F++
Sbjct: 179 TAVEGVQRAEILGARTFAMRIWLDPAKLAAFNISASEVRSALAANNTLSAVGQTKGNFIQ 238

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +E                      +    ++  + GA          +    
Sbjct: 239 VKLSTNTALESA--------------------EGFRQLAIRQDGATIVRLEDVAEVELGA 278

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                    +    I         LR          +       
Sbjct: 279 ETYDADVRFDGEQAVFMGIWSLPSANSLDVIARIRAEMENLRQRFPTGFRGEIAYDATKY 338

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      T      +V+IV+F+ +   +  LV   +I ++++  + L+ + G ++ L
Sbjct: 339 IDNALKEVVTTLGETLLVVVIVIFLFLGSVRSVLVPLVAIPVSLVGAVFLMQVFGFSINL 398

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            ++  IVL +GL VD  I++ E +    R+ ++ F S  +G       I  + +T     
Sbjct: 399 ITLLAIVLSVGLVVDDAIVIVENVERHMREGRTPFDSALIGARELIGPIIATTLTLAAVY 458

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
             + F G   G   R F IT+  +I+IS F A+++   +   ++  K  +       +  
Sbjct: 459 APIAFQGGLTGSLFREFTITLAGAIVISAFVALTLSPMLASKVLNPKSEEKGLTGFTNHL 518

Query: 532 FLIPDCIAIQFMRA----RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           F        + ++A    R        L ++    L     +N  +       +      
Sbjct: 519 FDRLREFYRRIVKATLRTRPAIYTGWTLVTLAIFPLFILSSMNTQLAPTEDQGIVFGVVS 578

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               + + +     +    +F+                G      +  +  ++ I  I  
Sbjct: 579 TASNTSIENTSHFTEQAQDAFETIPEYDYSFQITFPTGGYGGMIAKPWDERERDIFAIRQ 638

Query: 648 LSTIQNTEIVGPKISREL 665
               +   I G  I   L
Sbjct: 639 ELMPKLGAIPGITIFPVL 656



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 88/243 (36%), Gaps = 7/243 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +       V L  V       +  D   +    +  F+        +S+     +    +
Sbjct: 258 IRQDGATIVRLEDVAEVELGAETYDADVRFDGEQAVFMGIWSLPSANSLDVIARIRAEME 317

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
            + +  P            K     +++ +  +  + + ++I I++        L  +  
Sbjct: 318 NLRQRFPTGFRGEIAYDATKYIDNALKEVVTTLGETLLVVVIVIFLFLGSVRSVLVPLVA 377

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +   +    +FG   NL  + A++  +G  V+D +V+ + +    +      +  D
Sbjct: 378 IPVSLVGAVFLMQVFGFSINLITLLAIVLSVGLVVDDAIVIVENV---ERHMREGRTPFD 434

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
                  E +G  + T++       P+A  G   GS+   F I +A  IV++A  ++ ++
Sbjct: 435 SALIGARELIGPIIATTLTLAAVYAPIAFQGGLTGSLFREFTITLAGAIVISAFVALTLS 494

Query: 817 API 819
             +
Sbjct: 495 PML 497



 Score = 45.8 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/178 (10%), Positives = 57/178 (32%), Gaps = 22/178 (12%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE-------- 717
               +  + ++ I + + +  +F  +   L  +   +         F              
Sbjct: 856  TNFLPSLGLALILIFLVLAAQFNSFRDPLIILLGSVPLGMFGALIFTALRAPGGPWDPHW 915

Query: 718  -------FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                   +N+ +   V+TL+G    + +++ +       L     S  + + ++    L 
Sbjct: 916  SWGWTTSWNIYSQVGVITLLGLVSKNSILIVEFAN---SLQRQGRSKIEAVAEAAAVRLR 972

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              + T+ A     + +      G +   S  + +  G+ +    ++F    + + +  
Sbjct: 973  PILMTTAATVFGHMMLIFVTGAGAAARNSIGLVLVCGMAIGTLFTLFFVPSLYVLLAK 1030


>gi|229495223|ref|ZP_04388958.1| AcrB/AcrD/AcrF family protein [Porphyromonas endodontalis ATCC
           35406]
 gi|229317666|gb|EEN83564.1| AcrB/AcrD/AcrF family protein [Porphyromonas endodontalis ATCC
           35406]
          Length = 1043

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 66/557 (11%), Positives = 158/557 (28%), Gaps = 40/557 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L+  I  IG+       L       FPS                   V    
Sbjct: 9   KRPIATAMLFVAILVIGVFSLTKLPLDLMPNMEFPSLT--------------VITVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    + + S  +         ++  + I L +         A+     L+ 
Sbjct: 55  SAMEVEEQVSKPLEAVLSSAENLVEIKSISKENVSFIQLRYEWEEDITAAANNARDLLEL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S++       ++       + ++    N D+  +   E    +  Q    +   +   
Sbjct: 115 VKSRMPAQAYTPIIYKINASMMPVIGYAINADENYNGLEEI---VEDQIASTLRKVDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +   +   ++  E DP R++    +  ++S      N +             S     
Sbjct: 172 TVIYLGQPEREIRVEIDPIRMQGYGMSVTQLSMMLKANNINVPSGFVTESAYDFSVRMPS 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   E+    +                         +         I           
Sbjct: 232 KYESVQELENTVIKAFK--------------------GKVVRLKDVATIKDTFKETNASA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +            + ++              +    + S + 
Sbjct: 272 FNHRGRGIALLIQKQSGANTVEVANAVRAKISDIQNELPSDVQISEVIGSDELVISSINN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +       V +V+ + +   K  L+   ++ +++I    ++++LG T+ + S+  +V
Sbjct: 332 LSSSIWYALIFVTLVVLLFLREWKSSLIVFLTMPVSLISAFIVMNILGYTINIFSLVALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD+ I+V E I +   +      +   G S     I  S +T ++  + L F G
Sbjct: 392 IAIGMVVDNAIVVLENITQHIERGAMPKQAAMFGASEMGLAIAASTLTTIVVFLPLVFMG 451

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      +  A+     ++ S+FTA+++   +   +++              F       
Sbjct: 452 GIVGVMFKQLAVLTVTCLITSLFTALALTPMLSSVLLKPAPRSKESKKHGKLFNWSERMF 511

Query: 539 AIQFMRARFWGVGISIL 555
                  R +       
Sbjct: 512 QRVERIYRNFLGWAVFH 528



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 68/171 (39%), Gaps = 7/171 (4%)

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFN 719
               +      +  II  + + + +  +F+        +  +   +   +  F + G   +
Sbjct: 862  DQSDTFSSLTIIFIIGLMLVFMVMAAQFESLLDPFIILFAIPFTLVGIILAFLITGTTLS 921

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            +     ++ L+G  VN+ +V+ D    +  L     S RD + +S    L   + TSM  
Sbjct: 922  VVTFIGLIMLVGIVVNNGIVLVD---YSNMLVRRGYSIRDAVMESGRSRLRPVLMTSMTT 978

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + +LPMA+    G  +     I +  G++++   ++ +      F++  R
Sbjct: 979  ILGMLPMALSTGMGKEMYAPLGITIIGGLLISMLVTLILVPTAYAFMHQRR 1029



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 98/303 (32%), Gaps = 13/303 (4%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
             ++A    V    +        +        +       +     + V L  V +  ++
Sbjct: 204 MMLKANNINVPSGFVTESAYDFSVRMPSKYESVQELENTVIKAFKGKVVRLKDVATIKDT 263

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            +  + S  N  G    L+  +    ++V     +      I   +P     +  I   +
Sbjct: 264 FKETNASAFNHRGRGIALLIQKQSGANTVEVANAVRAKISDIQNELPSDVQISEVIGSDE 323

Query: 661 ISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           +    I      +  + I + L+ +    +W  +L    T+ + +        + G   N
Sbjct: 324 LVISSINNLSSSIWYALIFVTLVVLLFLREWKSSLIVFLTMPVSLISAFIVMNILGYTIN 383

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           + ++ A++  IG  V++ +VV + +    +        +       +E       +++  
Sbjct: 384 IFSLVALVIAIGMVVDNAIVVLENI---TQHIERGAMPKQAAMFGASEMGLAIAASTLTT 440

Query: 780 FISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI------YDWRAKN 830
            +  LP+   G   G +    A+     ++ +  +++ +   +   +           K+
Sbjct: 441 IVVFLPLVFMGGIVGVMFKQLAVLTVTCLITSLFTALALTPMLSSVLLKPAPRSKESKKH 500

Query: 831 ARI 833
            ++
Sbjct: 501 GKL 503


>gi|218247667|ref|YP_002373038.1| preprotein translocase subunit SecD [Cyanothece sp. PCC 8801]
 gi|257060997|ref|YP_003138885.1| preprotein translocase subunit SecD [Cyanothece sp. PCC 8802]
 gi|218168145|gb|ACK66882.1| protein-export membrane protein SecD [Cyanothece sp. PCC 8801]
 gi|256591163|gb|ACV02050.1| protein-export membrane protein SecD [Cyanothece sp. PCC 8802]
          Length = 470

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 135/518 (26%), Positives = 215/518 (41%), Gaps = 77/518 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+    L+   +++    +                   +    + LGLDL+GG+ L + V
Sbjct: 1   MQRQRLLLGFIAVLAITSIF-----------------ILSTLGLQLGLDLKGGAQLTILV 43

Query: 61  ----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKV 115
               +        LQ     L + +   G+    ++   ++KI +        E     +
Sbjct: 44  KPTKEVPRISPEDLQAEKTILENRVNALGVTEAFVQTLGEDKIVIQLPGVTDPEQAERVL 103

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    +     +                            I++  E     + Q  
Sbjct: 104 GGTAQLEFREQKQGTEGQFQAEF--------------------TIKRQYEAELATLRQAA 143

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            +  T QR+      I+   E   S  + +  T   +   +  P  S   +   + F   
Sbjct: 144 KTPETAQRIEELNKSIEKSNEAVLSLFQSVDLTGKNLKSARPSPTQSGNNWDVAISFDDA 203

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  +   +  +G  +     N         V+                        
Sbjct: 204 GGKKFAELTKNLAGTGRSIGIFLDNSLISAPVVGVEF----------------------- 240

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                        N  I  G A I+GNFTI++A  LA  +R GSLP  + +VE R VGA 
Sbjct: 241 ------------ANTGITGGNAVITGNFTIDSANDLAVQIRGGSLPFPVEVVENRTVGAT 288

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI     A +AGLVL+++FM V Y   G++AD ++ +  +LTLA  SL+G TLTLP
Sbjct: 289 LGQDSIRSSIYAGLAGLVLVLIFMAVYYRLPGVIADVALGIYTLLTLAAYSLIGVTLTLP 348

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAG +L IG+AVD+N+L+ ER REE R+  S++ S++ GF  A+S+I DSN+T LIA  
Sbjct: 349 GIAGFILSIGMAVDANVLIFERTREELREGNSLYRSVEAGFYNAFSSILDSNVTTLIACG 408

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            LF  G G V+GFA+T+ + + +SMFTA++  R  ++ 
Sbjct: 409 ALFGLGSGLVKGFALTLAIGVAVSMFTALTCSRTFLLL 446



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 75/165 (45%), Gaps = 4/165 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ IR  I   +   + +LI++ + ++    + A   L +    TL  ++L G+ 
Sbjct: 286 GATLGQDSIRSSIYAGLAGLVLVLIFMAVYYRLP-GVIADVALGIYTLLTLAAYSLIGVT 344

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      S    ++          + +++
Sbjct: 345 LTLPGIAGFILSIGMAVDANVLIFERTREELRE---GNSLYRSVEAGFYNAFSSILDSNV 401

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +   G  ++  FA+ +A G+ V+  +++  +   LL 
Sbjct: 402 TTLIACGALFGLGSGLVKGFALTLAIGVAVSMFTALTCSRTFLLL 446


>gi|212636212|ref|YP_002312737.1| hydrophobe/amphiphile efflux-1 family protein [Shewanella
           piezotolerans WP3]
 gi|212557696|gb|ACJ30150.1| Hydrophobe/amphiphile efflux-1 family protein [Shewanella
           piezotolerans WP3]
          Length = 1023

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/550 (12%), Positives = 155/550 (28%), Gaps = 55/550 (10%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD- 61
                +I+   I  IG++ AL     QS + R+P   P               + +EV  
Sbjct: 8   RPKLAIIISLFITLIGVIAAL-----QSPIGRYPDVAP---------------VTIEVST 47

Query: 62  -EDDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKV 115
             D      +      E+   +    G+         +    +T++FA+    +   + V
Sbjct: 48  FMDGASAEVITKSVAPEIEKQVNGVSGMDYMQSTSGADGTYTLTITFANGTDPDTANNLV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +     +L  D  KN +         ++    N     +   E S        + + 
Sbjct: 108 QNRVNLALPELPADASKNGVKVEKVSNGLLIGLAINDPSGKATDTEISGFSGGILKESLQ 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 +          +    +P+ +  L      +       N            L  
Sbjct: 168 RVNGVSKVDVLGEKKYSMRVWLNPNAMSHLFVNVGDIQAAINAQNKISSAGSVVSNTLEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S      +                       +    +   E   +         I     
Sbjct: 228 SVSVDGGLSSAE-------------------EFGNIVVRGEHFKKPVLLKDVATIELGAE 268

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           V            +          +     +    +   L                    
Sbjct: 269 VYTANAYAGISAGSVLFIYKDPSANAIEVGKAVQAITTSLET----DYQIQTVYDATAFV 324

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           +G+      T  +   +V ++  + +   +  L+   +I ++++ T A ++ LG  + + 
Sbjct: 325 IGAIDNVLETLVLAIIIVALITLVFMQSFRLTLITCAAIPVSLVGTFAAMAALGIDINII 384

Query: 416 SIAGIVLGIGLAVDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           S+ G+V+ IG+ VD+ I+V E      + +   +   ++     +  S I  S +  L  
Sbjct: 385 SMLGLVMAIGIVVDAAIIVIEAAEHELQEQPQLTPKQAVSASLGKVVSPIIASALVLLAV 444

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
                F  G        F I + +++L+S   A+++  A+    ++  K   I  +    
Sbjct: 445 FAPTIFMSGMTGIIYSEFGIVLSVAVLVSTLVALTLTPALCALFMKPPKKGFIARSLEKL 504

Query: 531 FFLIPDCIAI 540
             +       
Sbjct: 505 IGVKITVFKF 514



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 94/249 (37%), Gaps = 7/249 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +PV L  V +     ++   +        + L   +    +++   + ++ +   + 
Sbjct: 250 HFKKPVLLKDVATIELGAEVYTANAYAGISAGSVLFIYKDPSANAIEVGKAVQAITTSLE 309

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
               + T+ +           ++   ++ +II A+  L+++     +   L     + + 
Sbjct: 310 TDYQIQTVYDATAFVIGAIDNVLETLVLAIIIVALITLVFMQ---SFRLTLITCAAIPVS 366

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T    A  GI+ N+ ++  ++  IG  V+  ++V +     ++     ++ +  +  
Sbjct: 367 LVGTFAAMAALGIDINIISMLGLVMAIGIVVDAAIIVIEAAEHELQEQPQ-LTPKQAVSA 425

Query: 764 SINETLGRSVYTSMAAFISVLP-MAVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
           S+ + +   + +++       P + + G + I    F I ++  ++V+   ++ +   + 
Sbjct: 426 SLGKVVSPIIASALVLLAVFAPTIFMSGMTGIIYSEFGIVLSVAVLVSTLVALTLTPALC 485

Query: 821 LFIYDWRAK 829
                   K
Sbjct: 486 ALFMKPPKK 494



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/463 (11%), Positives = 135/463 (29%), Gaps = 22/463 (4%)

Query: 379  MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438
            + V+       A        +  +  L  +       S +G  L    A   + L+   +
Sbjct: 557  VFVVGSFPAGTALPVTDAYTLELVEKLQDIEGVSNSISASGFNLITSTADMGSFLLLLNL 616

Query: 439  REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
            +  + +  S    ++     A + +         A         G V G +  +  +   
Sbjct: 617  KPMDSRELSDNQVIE-----AANAVIAETGVEAFAFKPPVIPELGLVDGVSFVIKDAKGY 671

Query: 499  SMFTAISIVRAMMIFIIRYKKMKSIDINPLS-RFFLIPDCIAIQFMRARFWGVGISILFS 557
            S      I  +++  +  ++   ++ +   +     I   I  Q +         ++   
Sbjct: 672  SPGEMFEISNSIIAQLSSFEDDVALAMTQYAVDKPSIKLEIKRQELNKYGISFADTVTGM 731

Query: 558  ICSICLLFTHGLNY-------GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
                   + +  N         +      +    + + + LS       S        + 
Sbjct: 732  QAHFGGSYINTFNMNGRNYKVMVQNSPEYRTSAESLKAIKLSQANGTHISADKIFDISEE 791

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                       Q      V        V   I E+   + I            +   + I
Sbjct: 792  LAPNFINRFNAQQSVAFDVIPVSATGDVINLINELELPTGISVEFTGASAEEVKAGNQAI 851

Query: 671  VGVIISAIAMLIYIWIRFKWYFALGAITTLI--LDITKTLGFFALFGIEFNLTAVAAVLT 728
            + + ++ +   + +  +++ +    AI  ++    I    G   L G + N+    A + 
Sbjct: 852  IVLALALLVTYMVLVAQYESWLIPAAIMLVVPTAVIGIVYGVIYLQG-DINILTQLAAVL 910

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA- 787
            L+G SV + +++ +  +    L    ++ +    +++         T+ +  + ++P+  
Sbjct: 911  LVGMSVRNAILIIEYAKD---LREKGMAIKTAAVEAMRLRARAVFMTAFSFGVGLVPLMM 967

Query: 788  --VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                G     +       GIV A       A    + + + R 
Sbjct: 968  ADAIGNGAQQALGYASFGGIVSATFIGCIFACVFFVILQNTRE 1010


>gi|284048856|ref|YP_003399195.1| protein-export membrane protein SecD [Acidaminococcus fermentans
           DSM 20731]
 gi|283953077|gb|ADB47880.1| protein-export membrane protein SecD [Acidaminococcus fermentans
           DSM 20731]
          Length = 417

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 150/412 (36%), Positives = 239/412 (58%), Gaps = 27/412 (6%)

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  K  V   K  L       + +   +    +V   AI +S++II +R++++G++E  
Sbjct: 21  AVFIKPLVSTVKQGLDLQGGTHVVLQAQETPESKVDDDAINRSIQIISRRVNELGLTEPV 80

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQR G  +I+++LPG +DP +   +LG TA + F                          
Sbjct: 81  IQRQGKDKIIVELPGVKDPEQAIAMLGKTAMLEF-------------------------- 114

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +E    ++G  L  + A+ D    +PVV + F+E GA++F ++T  N+G+ +A++LDG
Sbjct: 115 KDMEGNTVLTGKDLKDSKASADQSG-QPVVTLQFNEDGAKKFADLTARNVGRQIAILLDG 173

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VLTAP +++ I  G AQI+G+   + A  LA +LR+GSLP+KL +VE R VG  LG D+
Sbjct: 174 KVLTAPRVSEPITGGNAQITGSKDAKEAEHLAILLRSGSLPVKLEVVENRTVGPTLGQDA 233

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A   GL  + LFM++ Y   GLVAD  + L  +L LA++  L ATLTLP +AGI
Sbjct: 234 KDASMKAFAIGLAGVFLFMLLYYRLSGLVADIVLLLYTLLLLAVMKGLNATLTLPGMAGI 293

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L IG+AVD+N+L+ ER +EE    +++  +++ GFSRA++TI DSN+T L+A  VLF+ 
Sbjct: 294 ILSIGMAVDANVLIFERFKEEIANGKTLRAAVNSGFSRAFTTILDSNVTTLMAAAVLFYL 353

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           G G ++GFA+T+ L +LISMFTA+++ + ++  +I     K+        F 
Sbjct: 354 GTGPIKGFAVTLALGVLISMFTAVTVTKFILGALIGSNFTKNPAWFGAKAFQ 405



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 27/196 (13%), Positives = 77/196 (39%), Gaps = 4/196 (2%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G   A+      +  +   +     +     VGP + ++     +    I    + +++
Sbjct: 193 TGSKDAKEAEHLAILLRSGSLPVKLEVVENRTVGPTLGQDAKDASMKAFAIGLAGVFLFM 252

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++    L A   L+L     L           L  +A ++  IG +V+  V++++R 
Sbjct: 253 LLYYRLS-GLVADIVLLLYTLLLLAVMKGLNATLTLPGMAGIILSIGMAVDANVLIFERF 311

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           ++ +       + R  ++   +      + +++   ++   +   G   I  FA+ +A G
Sbjct: 312 KEEIA---NGKTLRAAVNSGFSRAFTTILDSNVTTLMAAAVLFYLGTGPIKGFAVTLALG 368

Query: 805 IVVAASSSIFIAAPIL 820
           ++++  +++ +   IL
Sbjct: 369 VLISMFTAVTVTKFIL 384



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 54/169 (31%), Gaps = 16/169 (9%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD---EDDFVNG 68
            ++  + ++IA   F+   +          + +  GLDL+GG+H+VL+     E    + 
Sbjct: 9   LLVSVLAIVIAFAVFIKPLV----------STVKQGLDLQGGTHVVLQAQETPESKVDDD 58

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
            +      +   + + G+    +++   +KI +     +  E     +          + 
Sbjct: 59  AINRSIQIISRRVNELGLTEPVIQRQGKDKIIVELPGVKDPEQAIAMLGKTAMLEFKDME 118

Query: 128 VDPKKNL--LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            +       L  +             +      A + +    R    QI
Sbjct: 119 GNTVLTGKDLKDSKASADQSGQPVVTLQFNEDGAKKFADLTARNVGRQI 167


>gi|170077279|ref|YP_001733917.1| preprotein translocase subunit SecD [Synechococcus sp. PCC 7002]
 gi|169884948|gb|ACA98661.1| protein-export membrane protein SecD [Synechococcus sp. PCC 7002]
          Length = 467

 Score =  145 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 121/513 (23%), Positives = 208/513 (40%), Gaps = 77/513 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+    +++    +  I +                 + +    + LGLDL+GG+ L ++V
Sbjct: 1   MQKQRLIIVAILFLVAIAI-----------------TILTTLPLQLGLDLKGGAQLTIQV 43

Query: 61  DEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKV 115
             +                 + + +   G+     +    ++I +        E     +
Sbjct: 44  QPNAEGVVVEADDTAAVKRVIENRINGLGVAEPITQLVGNDRILVQLPGVTDPEQAERVL 103

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q      N   +         +        +        A +  +E +   ID + 
Sbjct: 104 GGTAQLEFRPQNPGTEAEFQEKYALRRQLDAQLTSLRGSASPAASDAEIEELETNIDSLD 163

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                               ++  +    +      ++  +  P  +   +   + F  +
Sbjct: 164 --------------------QEILALFEPVGLVGEYVTNAQPAPTQTGNSWQVFLNFNSE 203

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  +   +  +G  +                                         
Sbjct: 204 GAELFAEITKGLAGTGRSVGIFL-----------------------------------DD 228

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
            +L    +      Q I  G   I+GNF I+TA  LA  +R GSLP  + +VE R VGA 
Sbjct: 229 ALLSAPTVGPEYTAQGIAGGNVTITGNFDIDTASDLAIQIRGGSLPFPVAVVENRTVGAT 288

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI +   A +AGL+L+++F+ V Y   GL+AD ++ +  +LTLA  SL+G TLTLP
Sbjct: 289 LGQDSIRQSIYAGIAGLILVLIFVAVYYRLPGLIADVALVVYTLLTLACYSLVGVTLTLP 348

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAG +L IG+AVD+N+L+ ER REE  K  +++ +++ GF  A+S+I DSN+T LIA  
Sbjct: 349 GIAGFILSIGMAVDANVLIFERTREEIYKGNTLYRAVESGFFNAFSSILDSNVTTLIACA 408

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
            LFF G G V+GFA+T+ + + +SMFTA++  R
Sbjct: 409 ALFFLGSGLVKGFALTLAIGVGVSMFTAVTCSR 441



 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 87/216 (40%), Gaps = 4/216 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   +   +       +          G+    T     ++ +   +     +     V
Sbjct: 226 LDDALLSAPTVGPEYTAQGIAGGNVTITGNFDIDTASDLAIQIRGGSLPFPVAVVENRTV 285

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ IR+ I   I   I +LI++ + ++    L A   L++    TL  ++L G+ 
Sbjct: 286 GATLGQDSIRQSIYAGIAGLILVLIFVAVYYRLP-GLIADVALVVYTLLTLACYSLVGVT 344

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ +       +    ++          + +++
Sbjct: 345 LTLPGIAGFILSIGMAVDANVLIFERTREEIY---KGNTLYRAVESGFFNAFSSILDSNV 401

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
              I+   +   G  ++  FA+ +A G+ V+  +++
Sbjct: 402 TTLIACAALFFLGSGLVKGFALTLAIGVGVSMFTAV 437


>gi|115525982|ref|YP_782893.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
 gi|115519929|gb|ABJ07913.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
          Length = 1021

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 185/583 (31%), Gaps = 39/583 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+     IL+ ++   GL+        Q  L+  P                   +     
Sbjct: 10  RHPVPTTILFVLLTLSGLV-----GFSQLRLNNMPDMDIPTVT---------VTVPWAGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +  + ++  + L        ++ +  +   + FA     +   + V   +  
Sbjct: 56  APTEIETQITRFIEDGVAGLGAVDHVRSTINEGLSMTKVEFAIGTDIDRATNDVRDAVVS 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + SKL       ++        +I+     +D       E S  I               
Sbjct: 116 IRSKLPRAALDPMIRRVDATGQAIL--AFVVDAPGMAPDELSWLIDNDVAKATLAVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S  +  ++  + DP RL  L  T  ++S    + N ++ G    +     +     
Sbjct: 174 RISRSGGVDAEITIKLDPDRLMALGLTAVEVSDQVRIQNLTEPGGRAMLGGAEQAIRALG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V D   +  + +                         R        ++ +  A      
Sbjct: 234 SVTDVARLKDLRIA--------------------FSDGRSVKLSELGSVERSWAEPRQRA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +                        A   A    ++++ V         G ++ 
Sbjct: 274 RLNNREVVGFNVYRAVGSGEFAVARDVRKRMAEFVAAHPGLRIHEVTSSTDAVVEGYEAA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    + A L ++V+++ +   +  L++  ++ L++I T A+++ L  +L   ++  I 
Sbjct: 334 IE-ALWLGALLAVVVVWLFLRDIRATLISCAALPLSLIPTFAVMAALNQSLNNITLLAIA 392

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L +G+ VD  I+  E I    R+  + V+ +           +  +    ++    +   
Sbjct: 393 LVVGILVDDAIVEIENIVRHVRQSGKRVYDAAIDAADEIGLAVVATTFAIIVVFAPVGLM 452

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G   + F     +++  S+F ++ + R +   +  +    ++  +    +      I  
Sbjct: 453 PGIPGQFF-KAFSIAVCTSVFFSLIVARLLTPLMAAFLLKANLSEHREPAWVRRYTSILA 511

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +R R+  +G  ++F + S+ L+ +   ++      G  + +
Sbjct: 512 WTLRHRWITIGAGLVFFVASLALVPSLPADFMPAADRGRSVVI 554



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 58/161 (36%), Gaps = 7/161 (4%)

Query: 667 RKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              I  + + + +A+++           L +   L L +  T    A      N   + A
Sbjct: 331 EAAIEALWLGALLAVVVVWLFLRDIRATLISCAALPLSLIPTFAVMAALNQSLNNITLLA 390

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +  ++G  V+D +V  + + ++++         D    + +E     V T+ A  +   P
Sbjct: 391 IALVVGILVDDAIVEIENIVRHVRQSGKR--VYDAAIDAADEIGLAVVATTFAIIVVFAP 448

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIA---APILLFI 823
           + +  G     F    +  +  +   S+ +A    P++   
Sbjct: 449 VGLMPGIPGQFF-KAFSIAVCTSVFFSLIVARLLTPLMAAF 488



 Score = 42.8 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 5/115 (4%)

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 +L  +  +L L+G +  + +++ +     +      +     +  +  +     V
Sbjct: 898  TQTSISLPVLIGLLMLMGIAAKNSILLVE--YAIVAQRDAGLDRVQALLDAARKRARPIV 955

Query: 774  YTSMAAFISVLPMAV-WGGSVIG--SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             T++A    +LP+A   G         AI +  G+  +   S+ +       + D
Sbjct: 956  MTTVAMSAGMLPIAFGMGADAERRAPMAIAVIGGLFSSTILSLVLVPAFFTIMDD 1010


>gi|325068878|ref|ZP_08127551.1| protein-export membrane protein SecD [Actinomyces oris K20]
          Length = 625

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 109/603 (18%), Positives = 221/603 (36%), Gaps = 93/603 (15%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           +     ++++ ++  IG   AL     +      P         L LDL GG+ L+L   
Sbjct: 7   KRPGRRLLMFVLVLVIG-FGALVAGSMRHKASLTPG--------LALDLEGGTQLILTPT 57

Query: 61  --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL- 117
             D     +  ++   + +R  +   G+    + +   +  +     +  +   + V   
Sbjct: 58  TSDGSAISDNDVEQAIEVIRQRVDASGVSEAQISRQGGQNIVVSLPGKPSQATLELVRTS 117

Query: 118 ---FLQGVNSKLNVDPKK-------NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
              + + V   L    ++                  ++  S +   +    A +      
Sbjct: 118 AVMYFRPVLRVLPGSAQQAAKNIASQNPSGAVTPAPTVQPSPSAGSEATQPAEDSEGAEE 177

Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT---------TAKMSFHKVL 218
                +   +        + +   Q    ++ ++    +            A+   +   
Sbjct: 178 GTGEGEQPAATPAPTAQPTAQPTAQPRTPEEIAKQLADVNQDGVISSDPLPAQDKTNSSD 237

Query: 219 PNNSKKGFMFGVRFLRDSDGNQ------------------------YLVEDKVEISGIHL 254
              ++K    G         N                           +    EI+G  L
Sbjct: 238 SWITEKLLYDGYMTDCSDPKNLTGQTQDPKVAVISCSKEAGSHSHGAYILGPAEITGTEL 297

Query: 255 NG-----ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV-- 307
                   T +    TH+ VV ++F+  G ++F E+++  +         G         
Sbjct: 298 KSANSGLETDSRGQATHQWVVSLAFNGDGTKKFAELSKRLLAYRDQASAAGAQGAQNPQA 357

Query: 308 --------------------------INQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                                     ++  I  G+ QI+G FT   A  LA  L  GSLP
Sbjct: 358 QSSGDKAQFAIVLDGLTIMASGFNETVHSPITDGRVQITGGFTQNQANTLANQLSFGSLP 417

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           +   +  E+ + A LG++ +  G  A + G  LI+L++   Y    +VA  S+ +    T
Sbjct: 418 LSFTVQSEQQISATLGTEQLRNGLIAGLIGFALIILYLAWQYRGLAVVAVASLVVAAAGT 477

Query: 402 LALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
             +++ L AT+    +L  +AG+++ IG+ VDS I+  ER+R+E R+ +++  ++D G+ 
Sbjct: 478 YLVIAALSATMGYRLSLAGVAGLIISIGITVDSFIIYFERVRDEVRQGRTLRTAIDEGWK 537

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
            A  TI  S+   L+A +VL+F   G V+GFA T+G++  + +   I     +M +I+R+
Sbjct: 538 HARRTILVSDAVNLVAAIVLYFLAVGGVQGFAFTLGVTTCVDLAIIILFTHPLMEWIVRF 597

Query: 518 KKM 520
           +  
Sbjct: 598 RFF 600



 Score = 98.6 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 73/202 (36%), Gaps = 6/202 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                     +     +    T+Q+ + +   +  E +R G++  +I    +++Y+  ++
Sbjct: 400 TQNQANTLANQLSFGSLPLSFTVQSEQQISATLGTEQLRNGLIAGLIGFALIILYLAWQY 459

Query: 689 K---WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +          +              A  G   +L  VA ++  IG +V+  ++ ++R+R
Sbjct: 460 RGLAVVAVASLVVAAAGTYLVIAALSATMGYRLSLAGVAGLIISIGITVDSFIIYFERVR 519

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
             ++      + R  ID+         + +     ++ + +       +  FA  +    
Sbjct: 520 DEVRQ---GRTLRTAIDEGWKHARRTILVSDAVNLVAAIVLYFLAVGGVQGFAFTLGVTT 576

Query: 806 VVAASSSIFIAAPILLFIYDWR 827
            V  +  I    P++ +I  +R
Sbjct: 577 CVDLAIIILFTHPLMEWIVRFR 598


>gi|39935640|ref|NP_947916.1| acriflavin resistance protein [Rhodopseudomonas palustris CGA009]
 gi|39649493|emb|CAE28015.1| possible RND efflux transporter [Rhodopseudomonas palustris CGA009]
          Length = 1043

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/516 (11%), Positives = 135/516 (26%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +   GLL           +   P                     L   
Sbjct: 9   RRPIATSLLGVALMIGGLL-----GYLALPVSALPQVDFPTVQ---------VSTQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    +     +        +     ++++L F  +R  +     V   +  
Sbjct: 55  SPDVVASLITAPLERQLGQIPSLTAMTSTSSYGVSQVSLQFDLNRDIDGATQDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V++   +          S         ++       
Sbjct: 115 AAGILPKNLPYPPVYAKVNPADAPVMT-LALTSTTVSLRTMSDLADTLMAQRLAQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +  + D +RL     +   +       N S             +     
Sbjct: 174 RVSVLGGLKPAVRVQADLARLAAYGISMEDLRTAIANANVSGPKGSLDGAQQAYTIAAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            I                 I   L     G 
Sbjct: 234 QIAAA--------------------DAYRPIIVAYRNGSPVTIGDVAQIVDGLENERTGA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++        ++          V          S   
Sbjct: 274 WYQGTPAVILDIQRQPGANVIDVVKGIRAEIPRIQRLVPAGVKLTVVSDRTETIRASVHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV +V+ + +   +  ++A  ++ L++I +  ++  +G +L   S+  + 
Sbjct: 334 VQFTLLLSVVLVTLVVLLFLRSMRATIIAGVALPLSLITSFGVMYFMGFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +G G  VD  I++ E I       +S   +   G S    T+    ++ +   + L F  
Sbjct: 394 IGTGFVVDDAIVMIENIVRHMEDGESPMQAALKGASEIGFTVISLTMSLIAVFIPLLFMS 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R FA+T+ ++++ S   ++++   M   +
Sbjct: 454 GLVGRMFREFALTLTIAVVTSAIVSLTLTPMMCSRL 489



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSMRATIIAGVALPLSLITSFGVMYFMGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      S      K  +E     +  +M+     +P+    G V      FA+ +   
Sbjct: 411 VRHMEDGESPMQAALKGASEIGFTVISLTMSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAA 817
           +V +A  S+ +  
Sbjct: 471 VVTSAIVSLTLTP 483



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 76/225 (33%), Gaps = 6/225 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                  V  S +  L+            +   V + +      +    L+ ++    +I
Sbjct: 774 PGNAGAQVPISAVAELKRTIAPLAISHQAQFPSVAMSFNLAPDASLGEALKRIETIEKQI 833

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD-- 703
               +I            + +      ++ + +A+ I + + ++ Y     I + +    
Sbjct: 834 GMPGSIVGVFYGDAAEFSKALAGQPWLILAAIVAIYIVLGVLYESYIHPITILSTLPSAG 893

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L    LFG + ++  +  ++ L+G    + +++ D   +        +S  + I +
Sbjct: 894 VGAILALM-LFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALE--AERGQGMSSYEAIVQ 950

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +        + T++AA    LP+AV           P+   I+  
Sbjct: 951 ACRLRFRPIMMTTLAALFGALPLAV-ESGTGSELRFPLGISIIGG 994


>gi|87307587|ref|ZP_01089731.1| multidrug resistance protein MexB-like [Blastopirellula marina DSM
           3645]
 gi|87289757|gb|EAQ81647.1| multidrug resistance protein MexB-like [Blastopirellula marina DSM
           3645]
          Length = 1171

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/524 (12%), Positives = 149/524 (28%), Gaps = 41/524 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      +++  +I  +G L           + +FPS  P + +               V
Sbjct: 6   LHRPALAIVISLLILFMGGLAI-----TSLPISQFPSVAPPSVVVS-------------V 47

Query: 61  DEDDFVNG-FLQMYSDELRSFLKKE-GIGVFSM---RQIQNKITLSFADSRFKENIADKV 115
                     +      +   +     +   +       +  I ++F            V
Sbjct: 48  SFPGASAKILVNSTLVIMERAINGVPNMRYMTSAATSAGEASIMITFEPGTDPNVAVLNV 107

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +Q + ++L    ++  ++        ++                   +    + +I 
Sbjct: 108 NNRIQMIKNQLPPIVEREGIIVMQNMTSMLMYVNVYSKDPNHDQNFLYNYVSANLLPEIQ 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 +          +  E D  R+R    ++A +       +        G      
Sbjct: 168 RVRGVGRAKILGNRAYAMRVELDLDRMRAYNVSSADIMEMIKEQSIIGSPGRLGQATGTT 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S   +Y+                     K  +    I  +              +    +
Sbjct: 228 SQTIEYV-------------MTWVGRYDKPEQYADIILRENEKGEILRLKDVAKVSLGSS 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG-SLPIKLNIVEERNVGA 354
                  +        +       +    IE    L    +A    P     V       
Sbjct: 275 FYDLYSDIDGLPSASIVLKQTPGSNAADVIEQVKDLLKEFKAESFPPGMDYAVSYDVSSF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S      T      LV +V+++ +   +  L+   ++ +++I T   +S+ G ++ L
Sbjct: 335 LDASIEKVLHTLFEAFILVSLVVYLFLGDFRSTLIPTLAVPVSLIGTFFFMSMFGMSINL 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++  +VL IG+ VD  I+V E +  +  +   S + +           I    +     
Sbjct: 395 ITLFALVLAIGVVVDDAIVVVEAVHAKMHEKHLSPYLATKEVVGEISGAIIAITLVMTSV 454

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + + F  G      R FA+TM +SI++S   A+++   +   I
Sbjct: 455 FIPVCFMPGAVGVFYRQFALTMAMSIVLSGIVALTLTPVLCAMI 498



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 90/234 (38%), Gaps = 10/234 (4%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V + +L S      S  +     + +++       +    +V +++K+   E  P    
Sbjct: 265 DVAKVSLGSSFYDLYSDIDGLPSASIVLKQTPGSNAADVIEQVKDLLKEFKAESFPPGMD 324

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGF 710
                         I K +  +  + I + + +      +   L     + + +  T  F
Sbjct: 325 YAVSYDVSSFLDASIEKVLHTLFEAFILVSLVVYLFLGDFRSTLIPTLAVPVSLIGTFFF 384

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            ++FG+  NL  + A++  IG  V+D +VV + +    K++   +S      + + E  G
Sbjct: 385 MSMFGMSINLITLFALVLAIGVVVDDAIVVVEAVH--AKMHEKHLSPYLATKEVVGEISG 442

Query: 771 RSVYTSMAAFI--SVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
             +  ++   +    +P+    G+V      FA+ MA  IV++   ++ +   +
Sbjct: 443 AII--AITLVMTSVFIPVCFMPGAVGVFYRQFALTMAMSIVLSGIVALTLTPVL 494



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/245 (11%), Positives = 75/245 (30%), Gaps = 10/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V          S  +     Q  +    + +        + A           I E+  
Sbjct: 882  FVKNDEGEMVPYSSFMKLEKLQGMNEINRYNLYTTAIIQGAPANGYSSGQAIAAIQEVAE 941

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIA-MLIYIWI---RFKWYFALGAITTLILD 703
             +      I    +S +   KG   + I  +  + +Y+ +      +   L  + +L + 
Sbjct: 942  QTLPHGYGIGWQGLSYDEASKGNTAIYIFIVVVIFVYLVLVGQYESFLLPLAVLASLPVG 1001

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +  +       G+  ++     ++ L+G    + +++ +     ++     +S RD   +
Sbjct: 1002 LFGSFLMLKAMGLANDVYCQIGLVMLVGLLGKNAILIIEFA---VQRRHEGLSLRDAAIE 1058

Query: 764  SINETLGRSVYTSMAAFISVLPMA-VWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPIL 820
              N      V TS A    ++P+    G   I   +       G+++     + +   + 
Sbjct: 1059 GGNLRFRPIVMTSFAFIAGLIPLVRATGPGAIGNRTIGTTAVGGMLMGTLIGVVVIPGLY 1118

Query: 821  LFIYD 825
                 
Sbjct: 1119 YLFAK 1123


>gi|189347107|ref|YP_001943636.1| acriflavin resistance protein [Chlorobium limicola DSM 245]
 gi|189341254|gb|ACD90657.1| acriflavin resistance protein [Chlorobium limicola DSM 245]
          Length = 1041

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/517 (11%), Positives = 153/517 (29%), Gaps = 40/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +V+L+S++  +G          Q   +  P   P               +     
Sbjct: 9   KRPSLVVVLFSVLGILGFFS-----YLQLQYELLPKMTPPVV---------SIAVQYPGG 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   L    +E  S L+K         +  + +T+ F++    +         +  
Sbjct: 55  APDEVETSLTKPLEEAVSALEKIETISSISSEGLSVVTVEFSNDADIDLALQDAQRKINE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  D K  ++      E+ ++          +   +    +      Q+   +   
Sbjct: 115 IRDRLPDDAKDPVISKFALDEVPVLRIGAISSLSDTDFYQL---LKDNIKPQLSSIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   +     ++    D  RL+    T   +                       +  N  
Sbjct: 172 QVYLTGGREREIRVNLDLDRLQAYGFTVTDVLGTI-------------------NRANLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               K++ +        A       +    +        R        +      +    
Sbjct: 213 FPTGKIDAADRQFVVRLAGKFIGLDELKNLVLRSSAQGSRVHLKDVAEVRDGFRDITTLT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL-NIVEERNVGADLGSDS 360
            L        +   ++  +              L        +   + +      + + +
Sbjct: 273 RLNGKNAVGLMIMKQSDANTVDVSRLVRQELKRLETLYGRDGVRFDIAQDASTFTIEAVT 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    I   LV +V+ + +   +  L+   SI  +++ T   + +   +L L ++  +
Sbjct: 333 AVQHDLIIAILLVALVMLLFLHSLRNSLIVMVSIPTSLVTTFIGMYVFDFSLNLMTLLAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVL 477
            L +G+ VD +I+V E I       +    +   G +    T   I   ++   +   ++
Sbjct: 393 SLVVGILVDDSIVVLENIYRHIENGEEPREAALSGRNEIGFTALSITLVDVVVFLPLSLV 452

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               G  +R F+I M LS ++S+F + ++   +    
Sbjct: 453 TGIVGNILREFSIVMVLSTMVSLFVSFTVTPLLASRF 489



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 92/255 (36%), Gaps = 8/255 (3%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            QL         + + +     ++ G    Q  D      V+ Q       +  + +E V 
Sbjct: 776  QLTFRTQNGEQVRLGQFVTFGVERGYTKLQRKDRNNAVWVKAQVVDRPVGSIGQDIEQVI 835

Query: 640  KKITEIVPLSTIQNTEIVGP-KISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAI 697
              +     +    +       K   E     +V  +++ + + LI + +   + + +  I
Sbjct: 836  GNMKADGTMPQTVSYAYESDLKRQGESFSTLLVAFLVAIVFVYLIMVALYDSYVWPMVVI 895

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             ++ L +   L   A FG   ++  +  ++ L+G    + +++ D +    K     ++ 
Sbjct: 896  FSIPLAVIGALFALASFGKSLSIFTILGMIMLVGLVGKNAILLVDFI---TKFRQEGMAL 952

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIF 814
             + I ++  E L   + T+      +LP+A+ G S        A+ +  G+  +   ++ 
Sbjct: 953  HEAIIEAGRERLRPILMTTFTLVFGLLPIALSGSSGSEWKSGLAVALIGGLSSSMFLTLL 1012

Query: 815  IAAPILLFIYDWRAK 829
            +   +       R +
Sbjct: 1013 VIPVVYAGFDKLRER 1027



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 89/257 (34%), Gaps = 12/257 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L + ++       ++   E                   V L            V  +V++
Sbjct: 242 LVLRSSAQGSRVHLKDVAEVRDGFRDITTLTRLNGKNAVGLMIMKQSDANTVDVSRLVRQ 301

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGV----IISAIAMLIYIWIRF-KWYFALG 695
           ++  +  L           + +     + +  V    II+ + + + + +       +L 
Sbjct: 302 ELKRLETLYGRDGVRFDIAQDASTFTIEAVTAVQHDLIIAILLVALVMLLFLHSLRNSLI 361

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            + ++   +  T     +F    NL  + A+  ++G  V+D +VV + +    +      
Sbjct: 362 VMVSIPTSLVTTFIGMYVFDFSLNLMTLLALSLVVGILVDDSIVVLENI---YRHIENGE 418

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSS 812
             R+      NE    ++  ++   +  LP+++     G+++  F+I M    +V+   S
Sbjct: 419 EPREAALSGRNEIGFTALSITLVDVVVFLPLSLVTGIVGNILREFSIVMVLSTMVSLFVS 478

Query: 813 IFIAAPILLFIYDWRAK 829
            F   P+L   +    +
Sbjct: 479 -FTVTPLLASRFSRAER 494


>gi|170740337|ref|YP_001768992.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
 gi|168194611|gb|ACA16558.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
          Length = 1053

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 65/518 (12%), Positives = 148/518 (28%), Gaps = 42/518 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      ++ + I  +G++       P   +   P                   +   L 
Sbjct: 11  RYPVATSLIMAGILFVGIVA-----YPLLGVAPLPQVDFPT-----------IQVTAQLP 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + +   +    +   S +        S     + +++ F  SR  +  A+ +   +
Sbjct: 55  GASPETMASSVAQPLERQFSQIPGVSQMTSSSSLGVSSVSVQFDLSRNIDAAANDIQAAI 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +L  +              S +L   +        IE    +  Q   +I     
Sbjct: 115 NAAGGQLPKNLPSPPTYRKVNPADSPILI-LSATSDTLPLIEVDDAVDVQFAQRISQISG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q L   +    +  + DP++L     +   +     +   +     F       +   
Sbjct: 174 VAQVLIGGQQKPAVRIQVDPAKLVAKDLSLEDVRAQLSITTVNNPKGNFDGPTRSFTVYA 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              + +  +                      ++                           
Sbjct: 234 NDQLTEAKD--------------------WNNVIIAYRNGAPLRVRDIGQAVAGPEDAKQ 273

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                       +   +   +   T++        LRA         V          + 
Sbjct: 274 AAWTNGQRGVFLVIFKQPGANVIDTVDRIKAELPRLRAALPAAIKVEVLSDRTQTIRAAV 333

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              + T  +  GLV+ V+F+ +      ++   ++ L+++   AL+ + G TL   S+  
Sbjct: 334 EDVQFTLLLTIGLVVAVIFVFLRSLWATVIPSITVPLSLLGACALMWMAGYTLDNLSLMA 393

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + + +G  VD  I+V E I     +      +   G      TI   +++ +   + L  
Sbjct: 394 LTISVGFVVDDAIVVLENIARYLEEGMKPREAALKGAGEIGFTIVSISVSLVAVLIPLLL 453

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G   G   R FA+T+ ++I +S F ++S+   M    
Sbjct: 454 MGGIIGRLFREFAVTLSMAIGVSAFVSLSLTPMMASRF 491



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 94/260 (36%), Gaps = 10/260 (3%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           FT   N  +         ++A R      VR   +++   + + Q         V L   
Sbjct: 229 FTVYANDQLTEAKDWNNVIIAYRNGAPLRVRDIGQAVAGPEDAKQAAWTNGQRGVFLVIF 288

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI---RKGIVGVIISAIAML 681
                     ++ +K ++  +           V    ++ +          ++++   ++
Sbjct: 289 KQPGANVIDTVDRIKAELPRLRAALPAAIKVEVLSDRTQTIRAAVEDVQFTLLLTIGLVV 348

Query: 682 IYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
             I++  +  +A +    T+ L +        + G   +  ++ A+   +G+ V+D +VV
Sbjct: 349 AVIFVFLRSLWATVIPSITVPLSLLGACALMWMAGYTLDNLSLMALTISVGFVVDDAIVV 408

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSF 797
            + +    +     +  R+   K   E     V  S++    ++P+ + GG +      F
Sbjct: 409 LENI---ARYLEEGMKPREAALKGAGEIGFTIVSISVSLVAVLIPLLLMGGIIGRLFREF 465

Query: 798 AIPMAFGIVVAASSSIFIAA 817
           A+ ++  I V+A  S+ +  
Sbjct: 466 AVTLSMAIGVSAFVSLSLTP 485



 Score = 46.2 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 91/258 (35%), Gaps = 6/258 (2%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
             +    + V +        + +                  +   V + +    +VA  + 
Sbjct: 765  PETLRSIYVKSPTTGGQVPLAAFASWSTDPVRPLSISHQGQFPAVTISFNLAPNVALGQA 824

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++   ++    T+        +  ++ +    + ++ + I + + + + ++ +   
Sbjct: 825  TAAIEQASRDLGVPPTVMGGFQGTAQAFQQSLSTVPLLIVAALIVVYLILGVLYESYIHP 884

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L     FG +F+L A+  ++ LIG    + +++ D           
Sbjct: 885  LTILSTLPSAGVGALAMLLGFGFDFSLIALIGIILLIGIVKKNGIMMVD--FAIAAERAE 942

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
             +S  + I ++        + T+MAA +  +P+      G  +       M  G+ V+  
Sbjct: 943  HLSSEEAIRRAAILRFRPILMTTMAALLGGIPLMFGTGTGAEIRQPLGYAMVGGLAVSQV 1002

Query: 811  SSIFIAAPILLFIYDWRA 828
             ++F    I +++     
Sbjct: 1003 LTLFTTPVIYVYLDTLAQ 1020


>gi|270156983|ref|ZP_06185640.1| multidrug resistance protein MdtB [Legionella longbeachae D-4968]
 gi|289164599|ref|YP_003454737.1| multidrug efflux system, subunit B [Legionella longbeachae NSW150]
 gi|269989008|gb|EEZ95262.1| multidrug resistance protein MdtB [Legionella longbeachae D-4968]
 gi|288857772|emb|CBJ11616.1| multidrug efflux system, subunit B [Legionella longbeachae NSW150]
          Length = 1076

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 63/610 (10%), Positives = 167/610 (27%), Gaps = 33/610 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
              +  + + +    + +          +   P                           
Sbjct: 6   PFIVRAISTSLLMFAIFLTGALSYKLLPVSALPEVEYPTIQ---------VSTFYPGASP 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D ++  +    +     +        +     + ITL F      +    +V   +   +
Sbjct: 57  DVMSTTVTAPLERQFGQMPGLDQMTSNSSTGSSIITLQFNLDMSLDVAEQEVQQAINAAS 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S L        + +      + +L+       +    +       + + +I         
Sbjct: 117 SYLPTALPNPPVYSKVNPADTPILTLALTTNTLP-LTKVEDYAETRLVPKISQLLGVGLV 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                    +  + +P  L     T   +    +  N +     F    L  +  +   +
Sbjct: 176 SIGGGHRPAVRIQANPDALSAYGLTMENIRTLVMASNVNAAKGNFDGPRLAYTINSNDQL 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +                       +                 +       +    +
Sbjct: 236 LSAAD--------------------YRPLIIAYQNGAPVRLSDVARVIDGSENDMQAAWM 275

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       +   +     +    L   +R          +      +   S    +
Sbjct: 276 NKEPAIIINIQRQPGANVIEVAQRVKKLLQQMRVAIPAGVDVKILTDRTTSIRASVENVQ 335

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
               +   LV++V+F+ +      ++   S+ L ++ TL L+ LLG +L   ++ G+ + 
Sbjct: 336 LELLLSVVLVVMVIFLFLRKLSATIIPSISVPLALVGTLGLMYLLGFSLNNLTLMGLTIA 395

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG-- 481
            G  VD  I++ E I       +    +   G ++   TI   +I+ +   + L F G  
Sbjct: 396 AGFVVDDAIVMIENIMRYIEMGEKPIDASHKGAAQIGFTIISLSISLVAVLIPLLFMGDV 455

Query: 482 -GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G   R FA+T+ ++I IS F ++++   +   I++      +          +   +  
Sbjct: 456 VGRLFREFALTLTITIAISAFVSLTLTPMLCSRILKPHSESHVTRLEQFLENKLNYLVDY 515

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
             +   +     +++  +  I ++ T  L Y I             + V ++    +   
Sbjct: 516 YKISLGWVLSRQTLILLVFFITVIITSILLYLIPKGFFPIQDTGVIQGVSVASDSVSFNE 575

Query: 601 LQIGDISFQN 610
           +     +   
Sbjct: 576 MANRQQALVE 585



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 52/138 (37%), Gaps = 6/138 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
               K    +    ++ L +  TLG   L G   N   +  +    G+ V+D +V+ + +
Sbjct: 351 LFLRKLSATIIPSISVPLALVGTLGLMYLLGFSLNNLTLMGLTIAAGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
              M+         D   K   +     +  S++    ++P+   G   G +   FA+ +
Sbjct: 411 ---MRYIEMGEKPIDASHKGAAQIGFTIISLSISLVAVLIPLLFMGDVVGRLFREFALTL 467

Query: 802 AFGIVVAASSSIFIAAPI 819
              I ++A  S+ +   +
Sbjct: 468 TITIAISAFVSLTLTPML 485



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/350 (11%), Positives = 119/350 (34%), Gaps = 8/350 (2%)

Query: 485  VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
               + + + + ++          R + I   +  + + +     S          I    
Sbjct: 715  DTAYRLGITMQMIDDTLYDSFGQRQISIMFTQRNQYRVVLEVFPSLQRESVAFDNIYINS 774

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                    ++  +        ++ +                   +  SV      +L+  
Sbjct: 775  TITTTPNSTVTTAPVPNSPTTSYRVANPSVSSSLNLGS-TTGVSISGSVPIKAFANLRQQ 833

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                     ++     L +    + +    +  ++     +    +++       K  ++
Sbjct: 834  VAPLVIAHKDQFPSATLSFNLAHNASLGDAVTQIEAAKNSLGLPLSVEADFQGTTKSFQK 893

Query: 665  LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
             +      V  + I + I + + ++ +   L  ++TL       L    L G E ++ A+
Sbjct: 894  SLANQGWLVFAAIIVVYIILGVLYESYIHPLTILSTLPSASMGALLALYLSGNELSIIAL 953

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             A++ LIG  + + +++ D   +  + Y      +D I ++        + T+MA+ +  
Sbjct: 954  IAIILLIGLVLKNAIMMIDFALEQEREYKRK--PKDAIYEAALLRFRPILMTTMASMLGA 1011

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +P+A+    GG +     I +  G++V+   +++   PI+   +D  ++ 
Sbjct: 1012 IPLALSHGIGGELRRPLGIAIIGGLIVSQLITLY-TTPIIYLTFDRISRK 1060


>gi|325928386|ref|ZP_08189581.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
 gi|325541262|gb|EGD12809.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
          Length = 1169

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 73/570 (12%), Positives = 156/570 (27%), Gaps = 51/570 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 30  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 75

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 76  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 135

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ K  +L+        I+        S  +    I                ++
Sbjct: 136 L--SLPLETKPPVLLRFNPSTEPIMRLALSPKQSPASDTDAIRQLTGLRRYADEDLKKKL 193

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 194 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDNVITRLKEENVNISGGRLEEGSQR 253

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 254 YLVRTVNQFVDLDEIRNMLVTTQSSSGSAAEAAMQQMYAIAASTGSQAALAAAAEVQSTS 313

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              S    G           + +          L      +     +   +   T     
Sbjct: 314 SSSSSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKEAVELAIYKEGDANTVSTAAALR 373

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 374 KRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 433

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +   V 
Sbjct: 434 ISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLGVL 493

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
            +   G       +  S +T +   + L F     G   R  A+T+ ++I IS+  ++++
Sbjct: 494 DAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLVVSMTL 553

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +  +             + +          
Sbjct: 554 IPMLSSLKGAPPMAFPDEPSHPDWRPEQRW 583



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 66/207 (31%), Gaps = 6/207 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           + + +++    +     I   E     I   +       VI 
Sbjct: 354 ELAIYKEGDANTVSTAAALRKRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIG 413

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 414 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVD 473

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +   D       E     + +++      LP+       G 
Sbjct: 474 DSIVVLESI---AKARERGLGVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 530

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    A+ +A  I ++   S+ +   +
Sbjct: 531 LFRDQALTVAIAIAISLVVSMTLIPML 557



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +     D      V E+      + +      +  
Sbjct: 910  AAVAEVLATTGPSEIHRADQTRVAIVSASLKDIDLGGAVREVETMVRKDPLAAGVGMHIG 969

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 970  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 1028

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+G    + +++ D++    +L    +  R+ + +     L   + 
Sbjct: 1029 GKPISVVVFIGLILLVGLVTKNAIILIDKVN---QLREDGVPKREALIEGARSRLRPIIM 1085

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            T++      LP+AV    G  V    AI +  G
Sbjct: 1086 TTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1118


>gi|260910159|ref|ZP_05916836.1| AcrB/AcrD family multidrug resistance protein [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260635663|gb|EEX53676.1| AcrB/AcrD family multidrug resistance protein [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 1089

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 78/695 (11%), Positives = 196/695 (28%), Gaps = 48/695 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   +  +GL+  +        + ++P   P   IS+    +G        D
Sbjct: 8   QRPVLSTVISVFLVLLGLIGIV-----SLPIAQYPDIAPPT-ISVMAFYQG-------AD 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
               +N  +    + + + ++       +        IT+ F      +  A  V   + 
Sbjct: 55  AQTVLNSVVVPLEESI-NGVENMTYMESTATNDGTAMITIYFKQGVNADMAAVNVQNRVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  +  +  + T+  +  ++V+               +          I   +  
Sbjct: 114 QAQALLPAEVTQVGVTTSKRQTSNVVMYTITSSDGRYDEKFITNFNEINIQPAIKRVQGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P +++Q     + ++      N       FG +    +   +
Sbjct: 174 GNVQSFSSGTYSMRIWLQPDKMKQYGLMPSDVTAALAEQNIQAAPGSFGEQ---SNVAFE 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y++  K  +                 +    I  +    +  +      I          
Sbjct: 231 YVMRYKGRL-------------KTPEEYGNIIISNNTQGQTLYLKDVAKIELGALGYSVM 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      +    A  +     +    +         P     +          +  
Sbjct: 278 MKNNGHPSAMGMVQQIAGSNATQIAQDVKKVLEEQSKTFPPGLEYKINYDVTEFLFAAIE 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  I   LV +V+++ +   +  L+   ++ +++I T   L + G ++ L +++ +
Sbjct: 338 EVVMTLIITFVLVFLVVYVFLQDFRSTLIPLIAVPVSLIGTFLFLWMFGFSINLLTLSAL 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           +L I + VD  I+V E +  +       S   ++D     + + I  + + A +   V F
Sbjct: 398 LLAIAIVVDDAIVVVEAVHAKLDMGYKSSKVAAIDAMNEISGAIISITLVMACVFIPVSF 457

Query: 479 FFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK----KMKSIDINPLSRFF 532
             G      R F +TM +SI+IS   A+++  A+    ++        K           
Sbjct: 458 ISGTSGTFYREFGVTMAVSIIISAINALTLSPALCAIFLKPHADGEHGKKTSFVDRFHAG 517

Query: 533 LIPDCIAI---------QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                  I           +  R       ++  +  +  + T       +   G     
Sbjct: 518 FNVAFNKILGKYRKGVENLIGHRIITGIAVLVGIVVLVFTMSTTKTGLVPNEDTGTLFVT 577

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           ++  P         + +     ++       +  +    +  G    Q   +  +K    
Sbjct: 578 ISLPPATSQERTQEVVNQVDEMLANNPMIQSREQIAGYNFIAGQGSDQATFVLKLKPFEE 637

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                         G  I R  +      +I+  I
Sbjct: 638 RTGGFFYKLAGLWEGDGIMRFFVDVRSSNMILGTI 672



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/399 (11%), Positives = 117/399 (29%), Gaps = 18/399 (4%)

Query: 450  CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
             S +M     Y  I       +IA       G G       TM       +     + + 
Sbjct: 663  RSSNMILGTIYKQISSIKGAQIIAFGAPMIPGYGLTNSVTFTMQDKTGGDLDHFFKVTQD 722

Query: 510  MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
             +  + +  ++++        +      + +   +       + +         ++    
Sbjct: 723  YLKELNQRPEIQNAMTTYNPNYPQYLVDVDVAKCKQSGISPRVVLSTLQGYYGGMYASNF 782

Query: 570  N-----YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
            N     Y +  +G +   +  +   ++ V  +          + +   G  N      + 
Sbjct: 783  NSFGKLYRVMIQGDVASRMKPSDITNIYVRTAQGMVPVTEYCTLKRVYGPSNVRRFNLFT 842

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----RKGIVGVIISAIAM 680
              +            + I  I  ++        G   S        +     +I +   +
Sbjct: 843  SININVTPADGYSSGEVIKAIEEVAAQNLPTGYGYDFSGLTRSEHEQSNTTAIIFALCLV 902

Query: 681  LIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             +Y+ +      +   L  I +L   +     F  LFG + ++    A++ LIG    + 
Sbjct: 903  FVYLILSAQYESYLLPLSVILSLPFGLAGAFIFTQLFGHQNDIYMQIALIMLIGLLAKNA 962

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS- 796
            +++ +   +      T ++ +          L   + T +A  I +LPM    G      
Sbjct: 963  ILIVEFALE---RRRTGMAIKYSAILGAASRLRPILMTGLAMVIGLLPMMFASGVGKNGN 1019

Query: 797  --FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                     G+++     IF+   + +     + K + +
Sbjct: 1020 QTLGAAAVGGMLIGMVLQIFVVPALFVIFQHLQEKFSPL 1058


>gi|225874882|ref|YP_002756341.1| multidrug resistance protein MdtC [Acidobacterium capsulatum ATCC
           51196]
 gi|225792233|gb|ACO32323.1| multidrug resistance protein MdtC [Acidobacterium capsulatum ATCC
           51196]
          Length = 1038

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/541 (11%), Positives = 148/541 (27%), Gaps = 38/541 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +   G +           +   P       I+         +  L   
Sbjct: 9   RRPVATTLLTLAVAIAGAV-----GYSVLPVAPLPQVDFPT-IN--------VNASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S       ITL F  +R     A+ V   +  
Sbjct: 55  SAETMATSVATPLERQFGQISGVTEMTSSSSLGSASITLQFDLNRDINGAANDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +   N          S +L   ++            +       ++       
Sbjct: 115 ARTYLPANLPSNPNYFKENPADSPILI-MSLTSKKYDTTYMYDKASTIFQQKLSQINGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  E +P++L     T   +       N            +        
Sbjct: 174 QVFIGGASSPSVRVEVNPTQLESYGLTLPDLQAALSTQNADLPRGQIANSSMTADVITND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                       +                 +      V    
Sbjct: 234 QISKAAQ--------------------YQPLIVGYHNGAAVRLDQVARVYDGSQNVRTAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I   +   +   T++        L A         +          S   
Sbjct: 274 YTDGVPSVTVIIFRQPGANVIQTVDRIKAQLPALEADIPTGIDVHIVHDRTVTIRASVKD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +   +  L+   ++ +++I T A++ LLG +L   S+  + 
Sbjct: 334 VELTLLVALVLVVLVVFIFLRSPRATLIPSVAVPVSIIGTFAVMYLLGFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I        +   +   G      T+F  +++ +   + +   G
Sbjct: 394 ISTGFVVDDAIVVMENITRHVENGMTPMAAALKGAGEIGFTVFSISMSLIAVFIPILLMG 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FA+T+  +I++SM  +++    M   +++  + +  +    +   +    +
Sbjct: 454 GIIGRLFREFAVTLATAIVVSMVVSLTTTPTMCAHLLKGHEPEKQNRFSRASEKVFDSLL 513

Query: 539 A 539
            
Sbjct: 514 W 514



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 50/150 (33%), Gaps = 6/150 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L     + + I  T     L G   +  ++ A+    G+ V+D +VV + +
Sbjct: 351 IFLRSPRATLIPSVAVPVSIIGTFAVMYLLGFSLDNLSLMALTISTGFVVDDAIVVMENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +     ++      K   E        SM+     +P+ + GG +      FA+ +
Sbjct: 411 ---TRHVENGMTPMAAALKGAGEIGFTVFSISMSLIAVFIPILLMGGIIGRLFREFAVTL 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           A  IVV+   S+     +   +        
Sbjct: 468 ATAIVVSMVVSLTTTPTMCAHLLKGHEPEK 497


>gi|150388035|ref|YP_001318084.1| acriflavin resistance protein [Alkaliphilus metalliredigens QYMF]
 gi|149947897|gb|ABR46425.1| acriflavin resistance protein [Alkaliphilus metalliredigens QYMF]
          Length = 1049

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 61/515 (11%), Positives = 145/515 (28%), Gaps = 41/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  +I  +G +        +  LD  P       I                  
Sbjct: 10  KPVTTAMLMLVILLLGGISLA-----RLPLDLMPDIEIPVVI---------VTTSYSGVG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  + +           Q  + +   F      +  A ++   +   
Sbjct: 56  PHEMENLVTRPIEDTVATVSDLEAVTSVSSQGSSMVMARFDFGTDMDFAALEMREKVDMA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       +++      + +V+   +         E           ++        
Sbjct: 116 RGRLPDGATSPMVMKLDPNAMPVVMLSLSNGA---DLFELQTLAEDTIQPRLERISGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++  + D  +L        +++      N +  G        + +      
Sbjct: 173 VSIIGDYTNEIEIKVDQQQLNAYGIGIDQLTQVISASNMNMPGGTVERGAEKLTIRTMGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            E   EI  + +                                   +      +     
Sbjct: 233 FETVEEIGELPITLP--------------------SGSIIRLKDVAAVEVIQKEISTISR 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +          ++  +      +       LRA     +L             S +  
Sbjct: 273 TNSQNGIGIQIQKQSGTNTVQVANSIDREVEKLRAEHPEFELIT-IMNQAEYIQDSITSV 331

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L ++VL++ +      L+   ++ +++I T  LL   G TL + ++ G+ L
Sbjct: 332 AKNAVVGGLLAVLVLYVFLRNIGSTLIIATALPISIIATFVLLYFNGITLNMMTLGGLAL 391

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           G+G+ VD+ I+V E I     +  S   +   G       +  S +T +   + + F GG
Sbjct: 392 GVGMLVDNAIVVLENIYRYRSEGHSRKDAAIEGAKEVSMAVSASTLTTIAVFMPIIFVGG 451

Query: 483 ---GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                   FA+T+ LS+  S+  A++++  +   I
Sbjct: 452 ITSILFGEFAMTVALSLAASLLVALTLIPMLCSKI 486



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 89/267 (33%), Gaps = 6/267 (2%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           + T G    ++  G + + + +   + L  V +     +      +        +   + 
Sbjct: 227 IRTMGEFETVEEIGELPITLPSGSIIRLKDVAAVEVIQKEISTISRTNSQNGIGIQIQKQ 286

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
              ++V     ++   +K+    P   +         I   +       V+   +A+L+ 
Sbjct: 287 SGTNTVQVANSIDREVEKLRAEHPEFELITIMNQAEYIQDSITSVAKNAVVGGLLAVLVL 346

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
                     L   T L + I  T       GI  N+  +  +   +G  V++ +VV + 
Sbjct: 347 YVFLRNIGSTLIIATALPISIIATFVLLYFNGITLNMMTLGGLALGVGMLVDNAIVVLEN 406

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMA 802
           +    +  +   S +D   +   E       +++      +P+   GG     F    M 
Sbjct: 407 I---YRYRSEGHSRKDAAIEGAKEVSMAVSASTLTTIAVFMPIIFVGGITSILFGEFAMT 463

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829
             + ++ ++S+ +A  ++  +     K
Sbjct: 464 --VALSLAASLLVALTLIPMLCSKILK 488


>gi|170739235|ref|YP_001767890.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
 gi|168193509|gb|ACA15456.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
          Length = 1043

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 75/620 (12%), Positives = 177/620 (28%), Gaps = 28/620 (4%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  S ++        +    +  T+ F      +   + V   +  +
Sbjct: 58  PAELEAQVTKTIEDGVSGVEGVRHIASLVTDGVSVTTVQFRLETNTDRALNDVKDAITRI 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    +  L+       + IV              + S  +      ++       Q
Sbjct: 118 QADLPRSAEAPLIQRVDVVGLPIVTYAAVAPDKTPE--QLSYFVDTVVKRRLQSIRGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP RL+    T   +S                         N  +
Sbjct: 176 VETIGGSEREILVSLDPDRLQAYGLTAVDVSRRLR-------------------GINVDV 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
              + ++ G               +    +     G +   +                 +
Sbjct: 217 AGGRTQLGGRDFAIRALAGARSLDELKGTMIPLASGGQIRLQDLGVVTDTVADRRTFASL 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              PV+  AI   +A+ + +  +  A            P     + + +V   LG+    
Sbjct: 277 DAKPVV--AIGIKRAKGASDVVVAKAVQAKVDQIQAEYPDVKLSLIDTSVDYTLGNYEAA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    A L +IV+F+ +   +  ++   S+ L++      + LLG +L L S   + L
Sbjct: 335 IKTLFEGAALAVIVVFLFLRDLRTTVIVAVSLPLSIFPAFWAMDLLGFSLNLVSFLAVTL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLFF 479
             G+ VD +I+  E I    R  +S F +          A   I  + +        +  
Sbjct: 395 STGILVDDSIVEIENIVRHIRMGKSPFQAAIDAADEIGLAVIAISLTIVAIFAPASFMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   + F IT+ + +L S+  A  +   +  +I++    +      + R ++     +
Sbjct: 455 IAGQFFKQFGITIAVQVLFSLLAARFVTPMLAAYIMKPHVHEEKPPGRIERAYVWLVSKS 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN-- 597
           ++F              SI S+ LL    L      +  + + +        +   ++  
Sbjct: 515 VRFYGLTVILGIAIFAASILSMKLLSQGFLPAQDTARSLLSIELPPGSQASDTQRVTDVI 574

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           ++ L+        F                S+      +  +      +          +
Sbjct: 575 VKDLRQIPEVKSIFVDGGRIAGGTIEVRRASLILNYTNKTHRTITQRQLEQQVEARLRQI 634

Query: 658 GPKISRELIRKGIVGVIISA 677
                  +   G+  + +  
Sbjct: 635 PDIRYWFVDENGLRAISLVV 654



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 56/155 (36%), Gaps = 7/155 (4%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             +   +++++++R      +    +L L I        L G   NL +  AV    G  
Sbjct: 341 GAALAVIVVFLFLR-DLRTTVIVAVSLPLSIFPAFWAMDLLGFSLNLVSFLAVTLSTGIL 399

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG--- 790
           V+D +V  + +   ++      S       + +E     +  S+       P +  G   
Sbjct: 400 VDDSIVEIENI---VRHIRMGKSPFQAAIDAADEIGLAVIAISLTIVAIFAPASFMGGIA 456

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           G     F I +A  ++ +  ++ F+   +  +I  
Sbjct: 457 GQFFKQFGITIAVQVLFSLLAARFVTPMLAAYIMK 491



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 78/232 (33%), Gaps = 7/232 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  L   D        ++     +        A   VL  + +          +Q  +
Sbjct: 772  SAVADLGFQDGPANISRYDRERQATVAADLVGDAALGDVLAAINQLPVMRNLPKGVQVNQ 831

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +   EL       +    + +   + + F  +   +  + +L L +   +    + 
Sbjct: 832  SGDAENLAELSDGFAEVMRAGLLMVYAVLVMLFGSFLHPITILFSLPLSLGGAVVALLVT 891

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G +        +L L+G    + +++ +   ++M+     +S  + I  +  +     + 
Sbjct: 892  GKQLTTPVWIGILMLMGIVTKNAIMLVEFAIESMR---HGMSRNEAIIDAGRKRARPIIM 948

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            T++A    ++P A+    GG      AI +  G++ +   S+     +   +
Sbjct: 949  TTIAMVAGMVPSALAIGAGGEFRAPMAIAVIGGLLFSTVLSLIFVPAVFCLV 1000


>gi|261855619|ref|YP_003262902.1| acriflavin resistance protein [Halothiobacillus neapolitanus c2]
 gi|261836088|gb|ACX95855.1| acriflavin resistance protein [Halothiobacillus neapolitanus c2]
          Length = 1058

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 58/592 (9%), Positives = 160/592 (27%), Gaps = 48/592 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L++ +   G+            +   P+                    L   
Sbjct: 14  RRPVMTTVLFAALILFGVFA-----WRALPVAMLPNVAFPTV---------SVSASLPGA 59

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +               +ITL F  SR            +  
Sbjct: 60  SAELMASAVASPMEQAFSGIPGLLSVNSVNSTGTTRITLQFDLSRDINAATQDTQAAVTQ 119

Query: 122 VNSKLNVDP-KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                     ++  +         IV    +   +  + ++      +Q   ++      
Sbjct: 120 AARFFPSTMTQQPTVRQQNPTSSPIVFIGLSAPDMPLYQLD--AFAEQQLAVKLQSIPGV 177

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    +P  ++    +   +       N +                  
Sbjct: 178 SEVRVFGGQTYAVRLLLNPYAMQARNLSLTNLVNAIDSNNANLPQGTLQSPS------RS 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y ++   +++                   ++     +                       
Sbjct: 232 YNLKVDGQLTNATQFNKLIVAYNNGAPVELNQMGHAVDGV--------------QQNTRA 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +   +     +        L A         +          +  
Sbjct: 278 TWINNERGIILAIVRQPDSNTVDIAKAIRAALPKLNASLPGGAKMQIIYDKSTYVQAAVD 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  + + LV  V+++ +   +  ++A  SI ++++ T A++ LLG +L + ++  +
Sbjct: 338 EVEFTLVLASLLVAAVIWLFLGQWRQTIIAVISIPISILGTFAVMHLLGYSLNILTLLAL 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  +++ E I       +S   +  +G      TI    ++     + L   
Sbjct: 398 TLAVGFVVDDAVVMLENISRHREMGKSPMQAALIGSREIGFTILSMTLSLAAVFLPLILM 457

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKK--------MKSIDINPLS 529
           GG   R    F  T+G+ IL+S   A+S+   ++  +   K+           +     +
Sbjct: 458 GGLLGRLFLEFGATIGIVILMSGLVALSLTPMLLARMREQKQTDATLNPPKPGLFGRGFN 517

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                        ++ R+  +  +    + ++         +  +   G+ +
Sbjct: 518 ALTRGYIRSLRWSLKFRWLILLAAAGSLVGAVFFFQHLEKAFIPNSDTGMVM 569



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/218 (12%), Positives = 75/218 (34%), Gaps = 6/218 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  Q           +   + K    +   + +Q        +   +       V+ S +
Sbjct: 290 IVRQPDSNTVDIAKAIRAALPKLNASLPGGAKMQIIYDKSTYVQAAVDEVEFTLVLASLL 349

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
              +      +W   + A+ ++ + I  T     L G   N+  + A+   +G+ V+D V
Sbjct: 350 VAAVIWLFLGQWRQTIIAVISIPISILGTFAVMHLLGYSLNILTLLALTLAVGFVVDDAV 409

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG--- 795
           V+ + +    +      S          E     +  +++     LP+ + GG +     
Sbjct: 410 VMLENI---SRHREMGKSPMQAALIGSREIGFTILSMTLSLAAVFLPLILMGGLLGRLFL 466

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            F   +   I+++   ++ +   +L  + + +  +A +
Sbjct: 467 EFGATIGIVILMSGLVALSLTPMLLARMREQKQTDATL 504



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 84/248 (33%), Gaps = 12/248 (4%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V LS V      +    I+             L+           + E   + + + V  
Sbjct: 792  VPLSAVARFSTGVGPLSITHYGQLPSITLSFDLKPGYSLDQVSRAIEEAALEHLPQNVSG 851

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                + +          ++   + +  + + + + + I ++ +   L  +T L L     
Sbjct: 852  QFAGSAQAFQDS-----LKTLPLLLGATILVIYVILAILYEHFIHPLTILTALPLAGFGA 906

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    LF    ++ +   ++ L+G    + +++ D     +       S  D +  +   
Sbjct: 907  LASLYLFNQPLDVFSFVGIIMLVGLVKKNGIIMLDFA---IHRRREGESAIDAMVDACTV 963

Query: 768  TLGRSVYTSMAAFISVLPMAV-WG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 + T++AA +  LP+AV +G       +  I +  G+V +   ++++     +   
Sbjct: 964  RFRPIMMTTLAAILGTLPIAVGFGAQAEAHQALGIAVVGGLVFSQLLTLYVTPAFYVVAE 1023

Query: 825  DWRAKNAR 832
                +  +
Sbjct: 1024 GLTGRKKK 1031


>gi|261752393|ref|ZP_05996102.1| acriflavin resistance protein [Brucella suis bv. 5 str. 513]
 gi|261742146|gb|EEY30072.1| acriflavin resistance protein [Brucella suis bv. 5 str. 513]
          Length = 716

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482


>gi|317049348|ref|YP_004116996.1| acriflavin resistance protein [Pantoea sp. At-9b]
 gi|316950965|gb|ADU70440.1| acriflavin resistance protein [Pantoea sp. At-9b]
          Length = 1033

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/524 (12%), Positives = 148/524 (28%), Gaps = 33/524 (6%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90
            +   P       +             L     + +   +    +     +        S
Sbjct: 33  PVAPLPQVDFPTIM---------VSASLAGASPETMAATVATPLERSLGQIAGITEMTSS 83

Query: 91  MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
             Q  + I L F   R     A  V   +    S L    +            + ++   
Sbjct: 84  SSQGSSTIILQFELDRDINGAARDVQAAINAARSLLPSSMESLPTYRKANPSDAPIVM-L 142

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
            +        E       +    +   +   +       L  +  +  P +L Q   +  
Sbjct: 143 ALVSATRTPGELYDLAESKIEQAVSQVQGVGEVSLMGSALPAVRIDLQPQKLTQYGISLD 202

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            +         +    +           +   ++   +                      
Sbjct: 203 TVRTAIADSTTNLPKGILQGNSQSWVVDSNGQLDKAAQ--------------------YR 242

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
           ++       +         +   +        L A          +A  +   TI+    
Sbjct: 243 NLIVTYKDGKAVRLHDVATVYDSIEDKYQAGFLNATPSVMVGIKRQAGANMLDTIDAIKA 302

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
               L           V          S    + T  I   LV+ V+F+ +   +  ++ 
Sbjct: 303 QLPELEKDLPADTQLKVVVDRSPTVRESLYDTEETLLIAVMLVIAVVFIFLRNVQAVVIP 362

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ +++I T A++ LLG +L   S+  +++  G  VD  I+V E I     +  S   
Sbjct: 363 ALALPVSLIGTCAVMYLLGYSLDNLSLMALIISTGFVVDDAIVVLENITRHIEEGLSPLR 422

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIV 507
           +   G      T+    ++ +   + +   G   G   R FA+T+ +S+LISMF ++S+ 
Sbjct: 423 AALRGAQEVSFTVLSMTMSLIAVFIPILLMGSIVGRLFREFAVTLTISLLISMFVSLSLT 482

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
             +   +++ K   +   +P+ +F        +         V 
Sbjct: 483 PMLCARLLKAKPKVTKRPHPVYQFIENQLNALLAAYSRGLAWVM 526



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 74/219 (33%), Gaps = 6/219 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             ++ Q           +   + +   ++   + ++      P +   L       +I  
Sbjct: 283 VGIKRQAGANMLDTIDAIKAQLPELEKDLPADTQLKVVVDRSPTVRESLYDTEETLLIAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + + +           +     L + +  T     L G   +  ++ A++   G+ V+D
Sbjct: 343 MLVIAVVFIFLRNVQAVVIPALALPVSLIGTCAVMYLLGYSLDNLSLMALIISTGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +     +S      +   E     +  +M+     +P+ + G   G +
Sbjct: 403 AIVVLENI---TRHIEEGLSPLRAALRGAQEVSFTVLSMTMSLIAVFIPILLMGSIVGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              FA+ +   ++++   S+ +   +   +   + K  +
Sbjct: 460 FREFAVTLTISLLISMFVSLSLTPMLCARLLKAKPKVTK 498



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/87 (16%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
                  ++ +  I ++        + T++AAF   LP+A+  G    +     + +A G+
Sbjct: 937  AERRLGLTPQQAITQACLMRFRPIMMTTLAAFFGALPLALGSGGDADLRSPLGLAIAGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
             ++   ++F    + L++        R
Sbjct: 997  ALSQLLTLFTTPVVYLWLDSLSRATKR 1023


>gi|126642346|ref|YP_001085330.1| cation/multidrug efflux pump [Acinetobacter baumannii ATCC 17978]
          Length = 983

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/422 (10%), Positives = 109/422 (25%), Gaps = 18/422 (4%)

Query: 86  IGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           +     +   +    IT++F      +     V   +     +L  D ++  + T     
Sbjct: 1   MLYMQSQANSDGNLTITVNFKLGIDPDKAQQLVQNRVSQAMPRLPEDVQRLGVTTLKSSP 60

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
              ++                   +    D++   +   +          +    DP ++
Sbjct: 61  TLTMVVHLTSPDNRYDMTYLRNYAVLNVKDRLARLQGVGEVGLFGSGDYAMRVWLDPQKV 120

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            Q   T  ++       N        G              + ++               
Sbjct: 121 AQRNLTATEIVNAIREQNIQVAAGTIGASPSNSPLQLSVNAQGRL--------------- 165

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    I                 +    +      +L                +  
Sbjct: 166 TTEQEFADIILKTAPDGAVTRLGDVARVELAASQYGLRSLLDNKQAVAIPIFQAPGANAL 225

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
              +        L           +          S      T      LV++V+ + + 
Sbjct: 226 QVSDQVRSTMKELSKDFPSSIKYDIVYDPTQFVRASIKAVVHTLLEAIALVVVVVILFLQ 285

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             +  ++   ++ +++I T AL+   G ++   S+ G+VL IG+ VD  I+V E +    
Sbjct: 286 TWRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNI 345

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
               +   +           I    +T +   V L F  G   + +        + ++ +
Sbjct: 346 EAGLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTVIS 405

Query: 503 AI 504
           A 
Sbjct: 406 AF 407



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/395 (11%), Positives = 117/395 (29%), Gaps = 18/395 (4%)

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISM 500
           ++    ++ YS I D+ I       V+     G  +            A+       +  
Sbjct: 576 AIAGALNQKYSAIQDAYIAVFPPPPVMGLGTMGGFKLQLEDRGALGYSALNDAAQNFMKA 635

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
             +   +  M           ++D++ +           +      + G      F+   
Sbjct: 636 AQSAPELGPMFSSYQINVPQLNVDLDRVKAKQQGVAVTDVFNTMQIYLGSQYVNDFNRFG 695

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
                    +          L +         V  S+L ++                   
Sbjct: 696 RVYQVRAQADAPFRANPEDILQLKTRNSAGQMVPLSSLVNVTQTYGPEMVVRYNGYTSAD 755

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   P    + ++    V++   + +P                     G+    IS + +
Sbjct: 756 INGGPAPGYSSSQAEAAVERIAAQTLPRGIKFEWT-DLTYQKILAGNAGLWVFPISVLLV 814

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +  +++     L  I  + + I   L    L   + N+     ++ L+G +  + ++
Sbjct: 815 FLVLAAQYESLTLPLAVILIVPMGILAALTGVWLTAGDNNIFTQIGLMVLVGLACKNAIL 874

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
           + +  R+   L     +      ++    L   + TS+A  + V+P+      G  +  +
Sbjct: 875 IVEFARE---LEMQGATAFKAAVEASRLRLRPILMTSIAFIMGVVPLVTSTGAGSEMRHA 931

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             + + FG++      +F+     + I    +K+ 
Sbjct: 932 MGVAVFFGMIGVTFFGLFLTPAFYVLIRTLNSKHK 966



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 55/126 (43%), Gaps = 6/126 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  ++  +  + + I  T      FG   N  ++  ++  IG  V+D +VV + + +N++
Sbjct: 287 WRASIIPLLAVPVSIIGTFALMLAFGYSINALSLFGMVLAIGIVVDDAIVVVENVERNIE 346

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMA--AFISVLPMAV-WGGSVIGSFAIPMAFGIV 806
                ++ R+   +++ E  G  +  ++   A    L       G     FA+ +A   V
Sbjct: 347 A---GLNPREATYRAMREVSGPIIAIALTLVAVFVPLAFMTGLTGQFYKQFAMTIAISTV 403

Query: 807 VAASSS 812
           ++A +S
Sbjct: 404 ISAFNS 409


>gi|317124980|ref|YP_004099092.1| protein-export membrane protein SecD [Intrasporangium calvum DSM
           43043]
 gi|315589068|gb|ADU48365.1| protein-export membrane protein SecD [Intrasporangium calvum DSM
           43043]
          Length = 626

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 122/603 (20%), Positives = 211/603 (34%), Gaps = 67/603 (11%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           +      +   +   +GL +        +     P         LGLDL GG+ +VL   
Sbjct: 8   KKAALRSLAVLLALTVGLAVLAGGLFQWAGGQLTP--------RLGLDLEGGTEMVLAPV 59

Query: 61  --DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFAD---SRFKENIADK 114
             D      G L    + +R  +   G+    +     + I ++          + I   
Sbjct: 60  IEDGSAVNPGQLDRAVEIIRQRIDANGVAESEISTQGGRNIVVAIPGTPSEEQLDAIRKP 119

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
             L  + V  +             T    +   + +            +       +   
Sbjct: 120 SQLRFRAVFVQDFERAAPQATPEGTPSGTATTGTSSGTATTTGTPTPSASTTAASGVIPE 179

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN-------------- 220
           G+  +T     S             S       T A++                      
Sbjct: 180 GLRAATTAPTTSATGSPASTATTPASTEAPPAPTGAELEAAIAAQTSRGLLTLGWEQAKA 239

Query: 221 ----------------------NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
                                 +               DG    V   VEI G  +  AT
Sbjct: 240 DQAAAKVAKEYVGLNCLEPGAVDRATDLKDAPMATCGEDGVSKYVLGPVEIDGSEIGDAT 299

Query: 259 ANFDPKTHKP-----VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR-------VLTAP 306
           + + P           V +SF + G   F EVT+  +G      LD         V+TAP
Sbjct: 300 SGYQPGPTGQPTSIVEVRLSFKDSGRATFAEVTKRLVGLQGQPPLDQFAVVLDKRVITAP 359

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                I  G+A I+G+FTI++A  LA  L+ G+LP+   +     +   LG + +  G  
Sbjct: 360 QAKAVISDGRASITGSFTIDSAQRLAEQLKFGALPMSFALQTNDTITPQLGEEQLRLGLL 419

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT----LTLPSIAGIVL 422
           A + GL+L+V++ +  Y   G+V   S+ +   LT   L +LG T    LT+  + G ++
Sbjct: 420 AGLIGLILVVVYSMFQYRALGMVTVISLVVAATLTYLALVVLGTTHGFRLTMAGVTGAIV 479

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+  DS I+  ERIR+E R+ + +  +++ G+ RA  TI  ++   L+A VVL+    
Sbjct: 480 AIGVTADSFIVYFERIRDEVREGRPLVAAVETGWKRARRTIIAADAVNLLAAVVLYVLAS 539

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             VRGFA T+GL+ LI +   +     M+  + R +   +           +    + ++
Sbjct: 540 ANVRGFAFTLGLTTLIDLAVVMLFTHPMVQLLARTEFFGNGHKWSGLDPERLGAKESPRY 599

Query: 543 MRA 545
              
Sbjct: 600 RGR 602



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 15/150 (10%), Positives = 54/150 (36%), Gaps = 8/150 (5%)

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVN 735
           +++Y   +++    +  + +L++  T T     + G        +  V   +  IG + +
Sbjct: 428 VVVYSMFQYR-ALGMVTVISLVVAATLTYLALVVLGTTHGFRLTMAGVTGAIVAIGVTAD 486

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V ++R+R  ++           ++          +       ++ + + V   + + 
Sbjct: 487 SFIVYFERIRDEVRE---GRPLVAAVETGWKRARRTIIAADAVNLLAAVVLYVLASANVR 543

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            FA  +    ++  +  +    P++  +  
Sbjct: 544 GFAFTLGLTTLIDLAVVMLFTHPMVQLLAR 573


>gi|330885636|gb|EGH19785.1| multidrug efflux transporter [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 406

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 50/427 (11%), Positives = 108/427 (25%), Gaps = 31/427 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P+  P                      
Sbjct: 8   RPIFAWVIAICIMFAGGLSI-----SQLPLEQYPNIAPPTVK---------ISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASINLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L     D       +    I    +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGSSDFLMLVAFASDNESVTGTQIGDYISSTLLDQLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP+RL +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPARLEKYALMPSDISSALEAQNTEVSAGQLGALPAVTGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 KEVVKSLGEAIVLVVLIMFLFMQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVLGIGL 426
           +VL IGL
Sbjct: 400 MVLAIGL 406



 Score = 41.2 bits (94), Expect = 0.67,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 55/164 (33%), Gaps = 6/164 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + V ++    + ++R         +    N          +  Q         V
Sbjct: 243 PEQFENVVVKSSSDGAVVLLRDVARVELGSESYDINSALNGRPAAAMGIQLASGANALSV 302

Query: 635 LEMVKKKITEIVPLSTIQNT-----EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            E +K K+ E+ P    Q                  I++ +  +  + + +++ +++  +
Sbjct: 303 GEAIKAKLKELEPFYPTQMQLKTVIAYDTTPFVSLSIKEVVKSLGEAIVLVVLIMFLFMQ 362

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                L    T+ + +  T G  ALFG   N   + A++  IG 
Sbjct: 363 NLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFAMVLAIGL 406


>gi|325298770|ref|YP_004258687.1| acriflavin resistance protein [Bacteroides salanitronis DSM 18170]
 gi|324318323|gb|ADY36214.1| acriflavin resistance protein [Bacteroides salanitronis DSM 18170]
          Length = 1142

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/517 (11%), Positives = 144/517 (27%), Gaps = 36/517 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  ++  +G +      L    + ++P   P                      
Sbjct: 9   RPVLSTVISILLVILGFI-----GLATLPITQYPDIAPPTV---------SVSATYTGAN 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + ++       +     + +IT+ F      +     V   +  
Sbjct: 55  AQAVLNSVISPLEDQINGVENMMYMQSTATNNGSARITVYFNQGTDPDMAQVNVQNRVTQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  +  + T   +   +++      +   +            I +I       
Sbjct: 115 AQGLLPAEVTQVGVTTMKRQTSMLMIFSIYDKEDKYNIEFLENYASINLIPEIKRVSGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +     P  + Q     + ++      N       FG    R +   QY
Sbjct: 175 DANVMGT-DYSMRIWLKPDVMAQYKLVPSDITGVLAEQNVEAAPGQFGE---RGNQSFQY 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +S                +    +                 +           
Sbjct: 231 TIRYKGRLSSE-------------TEFGDIVIKSLPNGELLRLKDVAEMELGRLTYNFNN 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        I    A  +   TI     + A             + +        S   
Sbjct: 278 TVNGHKAVSCIVYQMAGTNATETIANLEKVLAEYEKNLPEGLGINIAQSANDFLFASIHE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+++ +   +  L+   +I + +I T   L ++G ++ L +++ +V
Sbjct: 338 VVKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALIATFFALKIIGFSINLLTLSAMV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L I + VD  I+V E +  +  +   S   +     S   S I    +  +   + + F 
Sbjct: 398 LAIAIVVDDAIVVVEGVHAKLDQGYKSTREASIDAMSELGSAIVSITLVMMSVFIPVSFM 457

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               G   + F +TM ++I  S   A+++  A+    
Sbjct: 458 SGTAGTFYQQFGLTMAIAIGFSALNALTLSPALCALF 494



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 23/181 (12%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALFGIEFNLTAV 723
             G+I     + +Y+ +      +   L  + +    L+       GF AL  I      +
Sbjct: 941  TGIIFVLCLVFVYLLLSAQYESYLLPLAVLLSIPCGLLGSFLFVNGFSALGSIPALKMVL 1000

Query: 724  ----------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                       A++ L+G    + +++ +     +      +S         +  L   +
Sbjct: 1001 GTMSNDIYMQIALIMLMGLLAKNAILIVEFA---LDRRKQGMSISWAAVLGASARLRPIL 1057

Query: 774  YTSMAAFISVLPM-AVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             TS+A  I +LP+   +G       +       G+++     IFI   + +     + K 
Sbjct: 1058 MTSLAMIIGLLPLMFAFGVGAHGNRTLGASAIGGMLIGMIFQIFIVPILFVTFQWLQEKV 1117

Query: 831  A 831
             
Sbjct: 1118 K 1118



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 81/237 (34%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V          + +      +    +  Q    ++      LE V  +  + +P     
Sbjct: 262 DVAEMELGRLTYNFNNTVNGHKAVSCIVYQMAGTNATETIANLEKVLAEYEKNLPEGLGI 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N            I + +  +I + I + I ++I        L     + + +  T    
Sbjct: 322 NIAQSANDFLFASIHEVVKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALIATFFAL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  ++A++  I   V+D +VV + +   +       S R+    +++E    
Sbjct: 382 KIIGFSINLLTLSAMVLAIAIVVDDAIVVVEGVHAKLDQGYK--STREASIDAMSELGSA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  ++      +P++   G+       F + MA  I  +A +++ ++  +      
Sbjct: 440 IVSITLVMMSVFIPVSFMSGTAGTFYQQFGLTMAIAIGFSALNALTLSPALCALFLK 496


>gi|160872559|ref|ZP_02062691.1| transporter, AcrB/AcrD/AcrF family [Rickettsiella grylli]
 gi|159121358|gb|EDP46696.1| transporter, AcrB/AcrD/AcrF family [Rickettsiella grylli]
          Length = 1029

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/664 (11%), Positives = 183/664 (27%), Gaps = 43/664 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   I  +G+       L    + ++P       I+           V    
Sbjct: 9   QRPVLATVISLFILVLGI-----RSLTLLQIRQYP-YTENAVIT--------VSTVYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   + GF+    +   +  +       S  Q  ++I+     +        ++   +  
Sbjct: 55  DPALIAGFITTPLENSIAQAQGIDYLTSSSTQGSSEISAHLLLNYDPNKALTEINTKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++  L     + I+ +       ++ S+  + +  + R    Q+       
Sbjct: 115 VINQLPQQAQQPTLSIAIGETINSMYIGFYSPKLASN--QITDYLTRVVQSQLQAIHGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     + L  L    DP++L        +++      N                     
Sbjct: 173 QAEIVGQHLFSLRAWLDPAKLASYGLGADEVAHALSDNNFIAAVGRTK------------ 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G+     T +      +   ++                 +           
Sbjct: 221 --------GGMVTVDLTISTGLTHLEQFQNLIIKAHNGAIIRLKDVGKVTLGSQSYDTAV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    I+        + A         +          +   
Sbjct: 273 KFDNKPAVYIGIKIAPTANVLSVIKNIRKAIPDIFAQLPQGLNGKIVYDESRYINSAIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      +V +V+F+ +   +  ++   ++ L++I    ++ LLG T+ L ++  +V
Sbjct: 333 VMTSLVEALVIVTLVIFLFLGSVRSVIIPVIAMPLSLIGAFFIMLLLGYTINLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E I     + QSVF S   G       I   ++  +   V + F G
Sbjct: 393 LAIGLVVDDAIIIVENIYRHIEQGQSVFESAIQGARELAIPIISISVVLIAVYVPIGFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLSRFFLI 534
              G     FA T+  ++ IS   A+++   M    ++     S    +         L 
Sbjct: 453 GLTGALFTEFAFTLAGAVAISAIIALTLSPMMCSLSLKPPIKGSSRGFVGFIDDKFEQLR 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I         V +     I S            +  +    + +        + +
Sbjct: 513 DYYEKILERSLNNVSVTLVFALIILSSIYFLYATSKRELAPQEDQGIIISVLTAAPNATL 572

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           +            F+++    +          ++     V +   ++      L      
Sbjct: 573 QQTQLYSNQMFQIFKSYSETDHIFQLDGVNGLNTSIGGMVFKPWNERKRTTNELQPQIQQ 632

Query: 655 EIVG 658
            + G
Sbjct: 633 SLDG 636



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/198 (12%), Positives = 75/198 (37%), Gaps = 10/198 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + +  +  ++ + +    + +         RE++   +  ++I  + + +++    
Sbjct: 297 KNIRKAIPDIFAQLPQGLNGKIVYDESRYINSAIREVMTSLVEALVIVTLVIFLFLG--- 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +  +  + L +        L G   NL  + A++  IG  V+D +++ + +    
Sbjct: 354 SVRSVIIPVIAMPLSLIGAFFIMLLLGYTINLLTLLALVLAIGLVVDDAIIIVENI---Y 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      S  +   +   E     +  S+      +P+   G   G++   FA  +A  +
Sbjct: 411 RHIEQGQSVFESAIQGARELAIPIISISVVLIAVYVPIGFMGGLTGALFTEFAFTLAGAV 470

Query: 806 VVAASSSIFIAAPILLFI 823
            ++A  ++   +P++  +
Sbjct: 471 AISAIIAL-TLSPMMCSL 487



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 70/212 (33%), Gaps = 19/212 (8%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR----- 687
             + E ++   T    +           +  +       + +      ++I++ +      
Sbjct: 812  AMGEALQGLKTMTKKIFPENYNMDYAAQSRQYQQESSALMLTFFLALIIIFLCLAAQFES 871

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----DR 743
            F+  F +     + +          + G   N+     ++TLIG      +++     DR
Sbjct: 872  FRDPFIILVSVPMSMCGALIFISLGIGGASLNIYTEVGLVTLIGLISKHGILIVQFANDR 931

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVIGSFAIPMA 802
             ++           RD I  +    L   + T+ +  + V+P+ +  G   +  F I + 
Sbjct: 932  QQE-------GHEKRDAIQMAAGIRLRPILMTTASMVLGVIPLILATGAGAMSRFNIGLV 984

Query: 803  F--GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               GI +    ++F+   + L   +      R
Sbjct: 985  IASGISIGTLFTLFVLPAMYLVFAEEHHSKRR 1016



 Score = 40.8 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 51/530 (9%), Positives = 131/530 (24%), Gaps = 46/530 (8%)

Query: 3    NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            NN  + +++++I    +         +                     +G    VL    
Sbjct: 524  NNVSVTLVFALIILSSIYFLYATSKRELAPQED---------------QGIIISVLTAAP 568

Query: 63   DDFVNGF---LQMYSDELRSFLKKEGIGVFSMRQIQNKIT--LSFADSRFKENIADKVTL 117
            +  +              +S+ + + I         N     + F     ++   +++  
Sbjct: 569  NATLQQTQLYSNQMFQIFKSYSETDHIFQLDGVNGLNTSIGGMVFKPWNERKRTTNELQP 628

Query: 118  FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +Q     +    +       +       L    +       ++ +    R   +     
Sbjct: 629  QIQQSLDGI-AGARVAAFQKPSLPGGGSGLPVQFVITTTDDYVKLNDVSQRLLDEARQSG 687

Query: 178  ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          Q   + D ++   L  T A +        +             + D
Sbjct: 688  LFVYLDSDLKLDKPQTSIQLDRNKASLLGLTMADVGNLLASAMSE------NYINYFNFD 741

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            G  Y V  +V                     +++              T   +   +   
Sbjct: 742  GRSYQVIPQV-----------MQGYRLNADQLLNYYLKLPNGTTISLSTIARLKTLVVPE 790

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +         G    E    L  M +             ++      
Sbjct: 791  SINHFQQLNSATISAIPFPGVAMG----EALQGLKTMTKKIFPENYNMDYAAQSRQYQQE 846

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV-ADFSIFLNVILTLALLSLLGATLTLPS 416
            S ++       +  + L +      +    ++     + +   L    L + GA+L + +
Sbjct: 847  SSALMLTFFLALIIIFLCLAAQFESFRDPFIILVSVPMSMCGALIFISLGIGGASLNIYT 906

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              G+V  IGL     IL+ +   +  ++      ++ M        I  +  + ++  + 
Sbjct: 907  EVGLVTLIGLISKHGILIVQFANDRQQEGHEKRDAIQMAAGIRLRPILMTTASMVLGVIP 966

Query: 477  LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            L      G  +     + +   I I     + ++ AM +        K  
Sbjct: 967  LILATGAGAMSRFNIGLVIASGISIGTLFTLFVLPAMYLVFAEEHHSKRR 1016


>gi|300787170|ref|YP_003767461.1| preprotein translocase SecD subunit [Amycolatopsis mediterranei
           U32]
 gi|299796684|gb|ADJ47059.1| preprotein translocase SecD subunit [Amycolatopsis mediterranei
           U32]
          Length = 583

 Score =  145 bits (364), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 106/565 (18%), Positives = 207/565 (36%), Gaps = 71/565 (12%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FVN 67
             +I    L+    N  P                 LG+DL+GG+ + L     D      
Sbjct: 1   MIVIVLYALVFLTGNHKPTP--------------KLGIDLQGGTRVTLTARTPDGGQPTR 46

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             L      +   +   G+G   +    N + ++       +     +    +    K+ 
Sbjct: 47  ESLNQARQIIERRVNGIGVGGTEVLLDGNNVVITVP-GEQGDQAKS-LGKTAKLGFRKVV 104

Query: 128 VDPKKNLLVTT--------------TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
               + ++                          +        +               Q
Sbjct: 105 SSATQPVVPPQTAPPATTPPTSGAPKSSTPPSSGAPAATSGTPTTKPGGGGAPGAALAQQ 164

Query: 174 -------------------------IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                                       S+ ++    +  I +     Q+P  +      
Sbjct: 165 QSTTPAAPSSSSTPPPPASTPAPATPAPSDGSVDAQTAQEIQVAKALRQNPQLVGADGQP 224

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRD---------SDGNQYLVEDKVEISGIHLNGATA 259
             ++    +            +    D                + +   + G  +  A +
Sbjct: 225 NQELVSKAMAALTCAPNAKDPLEGNDDPRLPLVACGDHDTYKYLMEPEFLPGTEIADANS 284

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
           +++ +  + VV++SF   G + + + T  N+G+  A VLD +V++AP I  AI  G  QI
Sbjct: 285 SYNSQNGQWVVNLSFKSAGTKIWADFTSKNVGQQAAFVLDTQVVSAPNIQVAIVDGNTQI 344

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +G FT   A  L+ +L+ GSLP+     +   V A LG  S+  G  A   GL+++ ++ 
Sbjct: 345 TGKFTQAEAKDLSDILKYGSLPLSFASSDATTVSATLGLASLQAGLIAGGIGLLVVFIYC 404

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVN 435
           +  Y   G++   S+ L+  L  A+L LL    G TL L  IAG+++ IG+  DS ++  
Sbjct: 405 LFYYRLLGVLTILSLALSGALVFAVLVLLGRWIGYTLDLAGIAGLIIAIGITADSFVIYF 464

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ER+++E R+ ++   ++  G+ RA  TI  S+  + +A  +L+    G V+GFA T+G+S
Sbjct: 465 ERLKDEIREGRTFRSAVPRGWVRARRTILASDGVSFLAAAILYVIAVGDVQGFAFTLGMS 524

Query: 496 ILISMFTAISIVRAMMIFIIRYKKM 520
            ++ +     +   ++  +   K  
Sbjct: 525 TVLDLVVVYLVTHPLVAMVSTSKSP 549



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 79/236 (33%), Gaps = 14/236 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            G   + +               +++        +        +++    G++    +  
Sbjct: 290 NGQWVVNLSFKSAGTKIWADFTSKNVGQQAAFVLDTQVVSAPNIQVAIVDGNTQITGKFT 349

Query: 636 EMVKKKITEIVPL------STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           +   K +++I+            +   V   +    ++ G++   I  + + IY    ++
Sbjct: 350 QAEAKDLSDILKYGSLPLSFASSDATTVSATLGLASLQAGLIAGGIGLLVVFIYCLFYYR 409

Query: 690 WYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +  I +L L          L G       +L  +A ++  IG + +  V+ ++R++
Sbjct: 410 L-LGVLTILSLALSGALVFAVLVLLGRWIGYTLDLAGIAGLIIAIGITADSFVIYFERLK 468

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
             ++      +FR  + +         + +   +F++   + V     +  FA  +
Sbjct: 469 DEIRE---GRTFRSAVPRGWVRARRTILASDGVSFLAAAILYVIAVGDVQGFAFTL 521


>gi|194365415|ref|YP_002028025.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
 gi|194348219|gb|ACF51342.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
          Length = 1173

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 70/603 (11%), Positives = 165/603 (27%), Gaps = 53/603 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + +    +   G++      L    ++  P                         
Sbjct: 31  RRRVTIAMCTVTLLLFGVIA-----LGNLKVNLLPDLSYPTLT---------VRTEYTGA 76

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 77  APTEIETLITQPVEEAVGVVKNLRKLKSVSRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 136

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +N  L ++ K  +L+        I+        +  +    +                ++
Sbjct: 137 LN--LPLEAKAPVLLRFNPSTEPIMRLVLSNKAAPTSDADAVRELTGLRRYADEDLKKKL 194

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 195 EPVSGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDTVIKRLKDENINISGGRLEEGSQR 254

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE------------------ 276
                     D  EI  + +    +N            +                     
Sbjct: 255 FLVRTVNQFADLEEIRNLLVTTQASNGSAADSALQQMFNIAASTGSAAAIAAASAAQSAS 314

Query: 277 --------MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                                + +          L      +     +   +   T E  
Sbjct: 315 SGGGSSVVANGVPVRLKDVATVRQGYKEREAVIRLGGKESVELAIYKEGDANTVSTAEAL 374

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                 ++            E        + +  K    I   L ++++F+ +  G    
Sbjct: 375 RKRLEQIKGTFPSDVEMTTIEDQSRFIEHAIADVKKDAVIGGLLAILIIFLFLRDGWSTF 434

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           V   S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +   +
Sbjct: 435 VISLSLPVSIIATFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLGI 494

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAIS 505
             +  +G       +  S +T +   + L F     G   R  A+T+ ++I IS+  +++
Sbjct: 495 LQAAIVGTREVSMAVVASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLLVSMT 554

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           ++  M+  +     +   +    + +           +  R         F   +  ++ 
Sbjct: 555 LIP-MLSSLKGRPPLAFPEEAQNAPWQPQSRWQKPVALGRRGVVATARWSFYALAWLVVR 613

Query: 566 THG 568
              
Sbjct: 614 VWR 616



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 66/217 (30%), Gaps = 7/217 (3%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +  +           + + +++          +   E     I   +       
Sbjct: 353 ESVELAIYKEGDANTVSTAEALRKRLEQIKGTFPSDVEMTTIEDQSRFIEHAIADVKKDA 412

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           VI   +A+LI        +       +L + I  T  F    G+  N+ ++  +    G 
Sbjct: 413 VIGGLLAILIIFLFLRDGWSTFVISLSLPVSIIATFFFMGQLGLSLNVMSLGGLALATGL 472

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            V+D +VV + +    K     +           E     V +++      LP+      
Sbjct: 473 VVDDSIVVLESI---AKARERGLGILQAAIVGTREVSMAVVASTLTTIAVFLPLVFVEGI 529

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G +    A+ +A  I ++   S+    P+L  +   
Sbjct: 530 AGQLFRDQALTVAIAIAISLLVSM-TLIPMLSSLKGR 565



 Score = 62.4 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 75/213 (35%), Gaps = 8/213 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +  +       +    ++  +  +     D      + E+ +    + +      +  
Sbjct: 912  DAVAEVVATTGPSEIHRADQTRVAVVSANLRDIDLGAAMREVQQMVSEQPLGAGVGLHIG 971

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++   +  I    ++   + + +  +F+        + T+ L +   +    L 
Sbjct: 972  GQGEELAQA-AKSLIFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLALVGAILALMLT 1030

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+G    + +++ D++    +L    ++  + + +     L   + 
Sbjct: 1031 GKPISVVVFIGLILLVGLVTKNAIILIDKVN---QLREAGVAKHEALVEGARSRLRPIIM 1087

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            T++      LP+AV    G  V    AI +  G
Sbjct: 1088 TTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1120


>gi|167567277|ref|ZP_02360193.1| probable transporter lipoprotein transmembrane [Burkholderia
           oklahomensis EO147]
          Length = 560

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 59/550 (10%), Positives = 153/550 (27%), Gaps = 49/550 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L++++C  G +           +   PS                  + ++  
Sbjct: 9   RRPLPAILLFALLCVGGAV-----GFRALPVAELPSVDAPV-------------VTIDAS 50

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKEGIGV---FSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++      +   +   G        +   ++  T+ FA      +  ++V  
Sbjct: 51  LPGATPSQVEREITRPIEQGVAGIGAARRVLSRVTDGRSHTTIQFALEADPRDALERVRA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  +   L  D  + ++     + + +  + ++        ++ S  +       +   
Sbjct: 111 AVGRLRGSLPPDMPEPVVAQERIERVLLTYAASSA---RLDPVDLSWFVDSTLSKALLAV 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +      +  Q+    +P  L+ L      ++                V     S 
Sbjct: 168 PGVARVERQGGVDRQIDVALNPVALQALRIDAGDVAQQVRARLADTPAARIDVGGRAQSV 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +       E+  + L+                        RR        I    A  
Sbjct: 228 RMENAQTSVAELGALDLSL--------------------GDGRRVTLADIAAIDDAFAPP 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +L    +                 +        LR     I +       V     
Sbjct: 268 KQIALLDGRPVVGVQVMQAPGADEVRVAQGVRAAIETLRRAHPGIDV-RGVADYVAPIQR 326

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                         L ++++++ +   +  LV+  ++ L+++     ++ LG +L   ++
Sbjct: 327 VFDGAMSALYEGCVLAVLIVWLFLRDWRATLVSASALPLSILPAFLAMAWLGFSLNQLTM 386

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IG+ VD  I+  E I       +  F +   G       +  +++T +   +  
Sbjct: 387 LALILVIGVLVDDAIVEVENIARHLGDGKPPFAAALDGAREIGVAVIATSLTLVAVFLPT 446

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   + F  T   ++L S+  A  +   M  + +R       +   +  +   
Sbjct: 447 AFMNGAIGRYFKQFGWTAAAAVLASLVVARLLTPMMSAYCLRRAPPPRGESRTMRGYLAC 506

Query: 535 PDCIAIQFMR 544
                 +  R
Sbjct: 507 VRWCVARPWR 516



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 58/204 (28%), Gaps = 4/204 (1%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + ++            DG     V++   PG    +         +             
Sbjct: 257 IAAIDDAFAPPKQIALLDGRPVVGVQVMQAPGADEVRVAQGVRAAIETLRRAHPGIDVRG 316

Query: 655 EIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
                   + +    +  +     +A+LI       W   L + + L L I       A 
Sbjct: 317 VADYVAPIQRVFDGAMSALYEGCVLAVLIVWLFLRDWRATLVSASALPLSILPAFLAMAW 376

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   N   + A++ +IG  V+D +V  + +    +                 E     +
Sbjct: 377 LGFSLNQLTMLALILVIGVLVDDAIVEVENI---ARHLGDGKPPFAAALDGAREIGVAVI 433

Query: 774 YTSMAAFISVLPMAVWGGSVIGSF 797
            TS+      LP A   G++   F
Sbjct: 434 ATSLTLVAVFLPTAFMNGAIGRYF 457


>gi|15838977|ref|NP_299665.1| acriflavin resistance protein [Xylella fastidiosa 9a5c]
 gi|9107567|gb|AAF85185.1|AE004048_1 acriflavin resistance protein [Xylella fastidiosa 9a5c]
          Length = 1034

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 66/584 (11%), Positives = 158/584 (27%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  +GL+  L   +      + P    K         + G++      
Sbjct: 9   KRPIGTSLLAIGVFVLGLICYLQLSVAPLPKFQIPVIAVKAN-------QPGAN------ 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        S  +  + I L F  +R  ++ A  V   +  
Sbjct: 56  -ASTMATTVTAPLERYLGQIPGIKGMRSSSSENNSNIFLLFQSNRNIDSAAQDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L               +  ++      D     A              +   +   
Sbjct: 115 AQADLPSGLLTPSYEKANPNDDPVIALALTSDTQSMDA--LYNVADSLLAQYLRQIQGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +  + D   L  L  T  ++       N +                   
Sbjct: 173 SVDIVGASTPAIRVDVDMQALNALGLTMDQLQNAVRAANVTSPTGFLSNDTRTTEILLNS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                       +   +   R         +           
Sbjct: 233 TISKAAD-------------------FAHLVIATQPNGRIVRLSDIAQVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        LR       +      +      S   
Sbjct: 274 WFNHKRAVVMYVFLRTGANVVETVDRVKAELPALRTYLPSGTVITPYFDHTPTIRASLYE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      ++A  ++ L++     ++  L  TL   ++  +V
Sbjct: 334 IQTTLLISLAMVMLTMALFLRRLAPTVIAAATVPLSLAGGAIVMYALDFTLNNVTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG  VD  I++ E I        S   +   G     STI    ++ ++      F  
Sbjct: 394 IAIGFVVDDAIVMIENISRHLNTGMSPLEAALTGAREIGSTIVSITVSLVVVFAPFLFDH 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F IT+  +I+ISM  ++++  A+    +    +        +    +   I
Sbjct: 454 GMIGTLFREFGITLVAAIIISMLVSLTLTPALCSCFLSAHVVPEKSNGIGAWLERMYLRI 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +  A  + +  ++L ++  + L+ +  +  G   KG   + 
Sbjct: 514 LRLYTVALDFSLRHALLLALTPLLLIVSTVMLAGTIKKGTFPIQ 557



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 58/153 (37%), Gaps = 11/153 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     + A  T+ L +              N   + A++  IG
Sbjct: 338 LLISLAMVMLTMALFLRRLAPTVIAAATVPLSLAGGAIVMYALDFTLNNVTLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA-FISVLPMAVWG 790
           + V+D +V+ + +    +   T +S  +       E     V  S+    + V    ++ 
Sbjct: 398 FVVDDAIVMIENI---SRHLNTGMSPLEAALTGAREIGSTIV--SITVSLVVVFAPFLFD 452

Query: 791 GSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
             +I      F I +   I+++   S+ +   +
Sbjct: 453 HGMIGTLFREFGITLVAAIIISMLVSLTLTPAL 485



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 89/251 (35%), Gaps = 13/251 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V ++ +   + +L    I   N     +    L        A+  +  ++K    
Sbjct: 778  RSGKMVPITAIAHQVPALNPPQIKHDNQYTTMDLSYNLSPGVSSGEAEAIIEAVIK---- 833

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFK-WYFALGAITTLI 701
                               ++L    +  ++I+  +A+ I + + ++     +  ++TL 
Sbjct: 834  --GLRMPGDIHIAEDNSFKQDLNPNSMKILLIATLLAVYIVLGMLYENLIHPITILSTLP 891

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    +   E +  ++ A++ LIG    + +++ D     +      +     +
Sbjct: 892  AAGMGALLALYVSDTELSAISMIALVLLIGIVKKNAIMMID--FALVAQRERGLEPHAAV 949

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++        + TSM A ++ +P+A+    G  +     I M  G++++ S ++     
Sbjct: 950  REASIVRFRPIMMTSMVAILAAMPLAIGVGEGAELRRPLGIAMIGGLLISQSLTLLSTPA 1009

Query: 819  ILLFIYDWRAK 829
            + +       +
Sbjct: 1010 LYVIFSCLSQR 1020


>gi|118579206|ref|YP_900456.1| acriflavin resistance protein [Pelobacter propionicus DSM 2379]
 gi|118501916|gb|ABK98398.1| acriflavin resistance protein [Pelobacter propionicus DSM 2379]
          Length = 1032

 Score =  144 bits (363), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/665 (11%), Positives = 174/665 (26%), Gaps = 40/665 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL       + Q       +                   V    
Sbjct: 9   RRPVLALVVNLIIIIAGLQAIRSLNVRQYPRSENAAVT--------------VTTVYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V GF+    +   +                + I +    +        +++  +  
Sbjct: 55  SASLVRGFVTTPLERAIAAADGIEYMESQSSMGVSTIKVRLKLNYDATKALAEISSKVDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L +D +  ++   +           +         E +  ++R    ++       
Sbjct: 115 VRRDLPLDAEVPVINIESADSEFASAY-LSFTCDALQQNEITDYLVRVVQPRLSAVSGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  +  ++    V  N           ++        
Sbjct: 174 RADVLGARTFAMRIWLKPERMAALNISPVQVRQALVANNYLSTLGQSKGAYI-------- 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                           TAN +  T      ++               +I           
Sbjct: 226 ------------QVNLTANTNMNTVDDFRRLAIRGQNGAIIRLEDVADIVLGAEDYDTEV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +    I+        ++          V          +   
Sbjct: 274 RFSGQTAVFMGIWSLPNANSLDVIKRVRAEMEAIQRELPSGMHARVAYDATDYINNAIHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   +I +++I  + L+   G T+ L ++  IV
Sbjct: 334 VISTLIDTLLIVVVVIFLFLGSFRSVLIPLVAIPISLIGAVFLIQAFGFTINLLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +     + +S   +  +G       I    IT     + +   G
Sbjct: 394 LSVGLVVDDAIVVVENVERHMGEGKSPLEAALLGARELVGPIIAMTITLAAVYLPIGLQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFFLIPD 536
              G   R FA T+  ++ IS   A+++   M   +++                  L   
Sbjct: 454 GLTGSLFREFAFTLAGAVTISGVVALTLTPLMSSRLLKPGMEDHGLAGRISRGFNRLKEA 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R      +I   +  + +         +       +          S +  
Sbjct: 514 YGRRLDATLRARPAIYTIWIVVSLLTIPLFTMSAKELAPTEDQGVIFGIIDAAANSTLDQ 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           N       +  F +           Q   G      +  +   + I +I+P  + +   I
Sbjct: 574 NSRFAAAVNRVFLSIPETDFTFQITQPSSGMGGMVAKPWDKRTRNIFQIMPEVSQKLQAI 633

Query: 657 VGPKI 661
            G +I
Sbjct: 634 PGVQI 638



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 83/233 (35%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L  V   +   +  D   +       F+        +S+   + +    + I   +P 
Sbjct: 254 IRLEDVADIVLGAEDYDTEVRFSGQTAVFMGIWSLPNANSLDVIKRVRAEMEAIQRELPS 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                            I + I  +I + + +++ I++    +   L  +  + + +   
Sbjct: 314 GMHARVAYDATDYINNAIHEVISTLIDTLLIVVVVIFLFLGSFRSVLIPLVAIPISLIGA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +     FG   NL  + A++  +G  V+D +VV + +    +      S  +       E
Sbjct: 374 VFLIQAFGFTINLLTLLAIVLSVGLVVDDAIVVVENV---ERHMGEGKSPLEAALLGARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +G  +  ++      LP+ + G   GS+   FA  +A  + ++   ++ +  
Sbjct: 431 LVGPIIAMTITLAAVYLPIGLQGGLTGSLFREFAFTLAGAVTISGVVALTLTP 483



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/178 (11%), Positives = 57/178 (32%), Gaps = 23/178 (12%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKW----------YFALGAITTLILDIT------KTLGF 710
             K +    ++ I + + +  +F               L     LI           +   
Sbjct: 842  NKFLPAFALAVILIFLVLAAQFNSFRDPFVILAGSVPLAMFGALIFTFLKMPDPNVSFWT 901

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                    N+ +   ++TL+G    + +++ +      +L        + + ++    L 
Sbjct: 902  GGWT-TTLNIYSQVGLVTLVGLVAKNGILIVEFAN---QLQLQGRPKLEAVREAAMTRLR 957

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              + T+ A      P+ +    G +   S  + +  G+ +    ++F+   I + I  
Sbjct: 958  PILMTTAATIAGHFPLTLVTGAGAAARNSIGLVLVGGMFIGTLFTLFVVPSIYMLIAR 1015


>gi|326799108|ref|YP_004316927.1| acriflavin resistance protein [Sphingobacterium sp. 21]
 gi|326549872|gb|ADZ78257.1| acriflavin resistance protein [Sphingobacterium sp. 21]
          Length = 1056

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 65/684 (9%), Positives = 181/684 (26%), Gaps = 52/684 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++++ +  +G++            +  P   P                +    
Sbjct: 9   KRPSIVIVVFTALTLLGIIS-----YLSLNYEMLPKFNPGVV---------SISTIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S ++       +  +  + IT++       +   +     +  
Sbjct: 55  SPNEVENTVTKKLEDAVSSMENIKKLEATSFEGLSVITITLTSEADVDYAINDAQRKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D +   L   +  ++ I+              +    I ++    +       
Sbjct: 115 VLSDLPDDAETPSLAKFSLDDLPIITL---SATANMDDAQFFDLIDKRIQPIVSRVNGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    + ++L     +   +    +                     N  
Sbjct: 172 QVNLIGGQEREIQVNLNAAKLEAYGLSALDVQQVILNS-------------------NLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V+     +    A      ++    +        +   +   ++           
Sbjct: 213 FPTGSVKTKNQDILIRLAGKYKSVNELRNLVISTADDGAQIRLMDVADVQDAQEDAEKIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL-NIVEERNVGADLGSDS 360
            L             +  +     E    +   L        L  ++        L S  
Sbjct: 273 RLNRSGSIILQILKTSDANAVKVSEGVRAIVERLTTDYQKENLQIVIANDTSDYTLESAD 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +V+   +   +  ++   +I  +++ T   + L G TL L S+ G+
Sbjct: 333 AVVHDLFLAVILVAVVMLFFLHSLRNAVIVMVAIPASLVATFIGIYLFGFTLNLMSLLGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I       ++   +          T+    +  ++  + +   
Sbjct: 393 SLVVGILVDDAIVVIENIYRHMEMGKNKVRASYDATKEIGFTVVSITMVIVVVFLPISVS 452

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G     +R F + + +S L+S+  + SIV  +                 + +   +   
Sbjct: 453 TGLVSDILREFCVVVMISTLLSLLASFSIVPLLTSRFGKLERVSNRNFIGRFILWFEKQL 512

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL--FTHGLNYGIDFKGGIQLGVLA 585
                 +   +           V +S+L           F     +    +G   + +  
Sbjct: 513 HRFTNWVTGILNWALDHKAITLVTVSLLLVSSCGLTFGGFIGAEFFAQSDRGEFLVQIEL 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +   L +        +      +        + +     G   +     E+  K   + 
Sbjct: 573 PKDASLELTNQVTRKAEDFLSKKKEIVSLITTVGQSSDNLGADQSTAYKAEITVKLTPKE 632

Query: 646 VPLSTIQNTEIVGPKISRELIRKG 669
               +            ++L+   
Sbjct: 633 ERDESSDIYAAKLKGEIQKLLVGA 656



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 88/262 (33%), Gaps = 11/262 (4%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             L +          +    +     + + +     ++  + LQ          +V E V
Sbjct: 240 RNLVISTADDGAQIRLMDVADVQDAQEDAEKIARLNRSGSIILQILKTSDANAVKVSEGV 299

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI----ISAIAMLIYIWIRF-KWYFA 693
           +  +  +      +N +IV    + +   +    V+    ++ I + + +         A
Sbjct: 300 RAIVERLTTDYQKENLQIVIANDTSDYTLESADAVVHDLFLAVILVAVVMLFFLHSLRNA 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  +  +   +  T     LFG   NL ++  +  ++G  V+D +VV + +    +    
Sbjct: 360 VIVMVAIPASLVATFIGIYLFGFTLNLMSLLGLSLVVGILVDDAIVVIENI---YRHMEM 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAAS 810
             +       +  E     V  +M   +  LP++V  G    ++  F + +    +++  
Sbjct: 417 GKNKVRASYDATKEIGFTVVSITMVIVVVFLPISVSTGLVSDILREFCVVVMISTLLSLL 476

Query: 811 SSIFIAAPILLFIYDWRAKNAR 832
           +S  I   +          + R
Sbjct: 477 ASFSIVPLLTSRFGKLERVSNR 498



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 67/159 (42%), Gaps = 7/159 (4%)

Query: 671  VGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            V +++S + + LI + +   + +    + ++ L +   L   AL     N+  +  ++ L
Sbjct: 866  VALMVSIVLVYLIMVALYDSFVYPFVVMFSIPLSVIGALLALALTNNSLNIFTILGLIML 925

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG    + +++ D      ++     S R  +  + +  L   + T++A  I +LP+A+ 
Sbjct: 926  IGLVAKNAIILVDF---TNQMKAEGNSTRQALIHANHARLRPILMTTIAMVIGMLPIALA 982

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               G       A  +  G++ +   ++ I   +   + +
Sbjct: 983  SSAGSEWKNGLAWVIIGGLISSLFLTLIIVPVVYQVVDN 1021


>gi|325955409|ref|YP_004239069.1| acriflavin resistance protein [Weeksella virosa DSM 16922]
 gi|323438027|gb|ADX68491.1| acriflavin resistance protein [Weeksella virosa DSM 16922]
          Length = 1051

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/648 (9%), Positives = 176/648 (27%), Gaps = 38/648 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++L++++   G+L            +  P                    V    
Sbjct: 9   KRPSLVIVLFTLLTLGGILS-----YNMMGYELIPKFDVNVIT---------ISTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++    L+          +  + + +   D    +   +     +  
Sbjct: 55  SPNEVENSVTRKVEDAIGSLENIKKLESMSYESLSVVMIQLNDGADTDYALNDAQRKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D     L   +  ++ I+      +       +    + ++    +       
Sbjct: 115 ILADLPEDIDPPSLNKFSLDDLPIITMSGMANLND---TQLYDLLDKKVEPILSRVNGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++    D  +L     +  ++    +  N            L  +     
Sbjct: 172 EVTLVGGQEREIQVRLDAKKLEGYGVSVPQVQQAILSSNLDFPTGKVKTDKLTSTIRLSG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   E+S + +                       G +               +    R
Sbjct: 232 KYQSVNELSNLVIAS-------------------SNGIQIRLSDIATVYDAQKEIEKVAR 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P I   +       +   +      +  ++           +        L + + 
Sbjct: 273 FNQHPTIFLQVKKQSDANAVEVSELVRKQMYEIMEEYKNEGLQLNIVNDTSTFTLEAANS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   LV +V+ + +   +   +   +I +++I +   + LLG TL L ++ G+ 
Sbjct: 333 VLFDLGMAIFLVAVVMLLFLHSLRNAFIVMVAIPVSLISSFIGMELLGYTLNLMTLLGLS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+V E I       +S   +   G      T+    +  ++  + +    
Sbjct: 393 LVVGILVDDAIVVLENIYRHMEMGKSRIRAAYDGSKEIGFTVTAITLVIVVVFLPIALSS 452

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G A +  A    L+++I+   ++     ++ ++       +        F         Q
Sbjct: 453 GLAAKILAQ-FCLTVVIATLFSLLSSFTIIPWLSSRFGKLTKLTGKN-IFEKFILWFEHQ 510

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                 W   +           + T  +   + F   + +         +         +
Sbjct: 511 LDAFTHWISDLLRWCLQSRSHKILTVAIAIVLFFSSFLLVIFGFIGSEFMPKTDRGQFLI 570

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           QI     Q+ +     ++ ++    +      ++  V +  T      
Sbjct: 571 QIELPKDQSLEQTNQKVIEVERYIQNKKEIVDMITTVGQMSTGFGASQ 618



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 88/255 (34%), Gaps = 10/255 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +  +    +   +  +E +   +     F   K             + + ++ E++++
Sbjct: 250 IQIRLSDIATVYDAQKEIEKVARFNQHPTIFLQVKKQSD-ANAVEVSELVRKQMYEIMEE 308

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
              E + L+ + +T     + +  ++    + + + A+ ML+++        A   +  +
Sbjct: 309 YKNEGLQLNIVNDTSTFTLEAANSVLFDLGMAIFLVAVVMLLFL---HSLRNAFIVMVAI 365

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  +     L G   NL  +  +  ++G  V+D +VV + +    +      S    
Sbjct: 366 PVSLISSFIGMELLGYTLNLMTLLGLSLVVGILVDDAIVVLENI---YRHMEMGKSRIRA 422

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAA 817
                 E        ++   +  LP+A+  G    ++  F + +    + +  SS  I  
Sbjct: 423 AYDGSKEIGFTVTAITLVIVVVFLPIALSSGLAAKILAQFCLTVVIATLFSLLSSFTIIP 482

Query: 818 PILLFIYDWRAKNAR 832
            +            +
Sbjct: 483 WLSSRFGKLTKLTGK 497



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 75/212 (35%), Gaps = 18/212 (8%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWY 691
             V    + +         ++       +   E     ++ +  S I + L+ + +   + 
Sbjct: 829  DVAAQWQTQFDAEKKPVGMKYIWSGDMENQEEGFGTMLIALAASVILVYLLMVTLYDSFV 888

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKN 747
                 + ++ L +   L   A+ G   N+  +  ++ LIG    + +++ D    R+ + 
Sbjct: 889  HPFVVLFSVPLSLIGALLILAMTGNSLNIFTILGIIMLIGLVAKNAILLVDFTNSRIAE- 947

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFG 804
                    +    +  + +  L   + T++A    +LP+A+  G    +    A  +  G
Sbjct: 948  ------GETTYQALIDANHARLRPIMMTTIAMVFGMLPIALAKGAAAEMNNGLAWVIIGG 1001

Query: 805  IVVAASSSIFIAAPILLFIY---DWRAKNARI 833
            ++ +   ++ +   +        +   K  +I
Sbjct: 1002 LISSLFLTLVVVPVVYSLFDSVMNRIFKGKKI 1033


>gi|222148038|ref|YP_002548995.1| AcrB/AcrD/AcrF family protein [Agrobacterium vitis S4]
 gi|221735026|gb|ACM35989.1| AcrB/AcrD/AcrF family protein [Agrobacterium vitis S4]
          Length = 1043

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/583 (10%), Positives = 161/583 (27%), Gaps = 40/583 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   GL            +   P       I+            L    
Sbjct: 9   RPVATILLAIGLVLAGLA-----GYRLLPVAALPKVDFPT-IN--------VTATLSGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +     +    +        +     + + L F  +R  +  A  V   +   
Sbjct: 55  PETMATSVSTPLIKQFETIPGISEISATNSLGNSSVVLQFDLNRDIDAAAADVQAAISRA 114

Query: 123 NSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + +L  +   +     T      ++L   N D++    ++   E I      +       
Sbjct: 115 SRQLPSNMTSDPSYRKTNPADSPVLLLAINSDEMPRSQVDSIAENI--ISPLLSTLNGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    DP++L+        ++      N+        +     +     
Sbjct: 173 QVSIYGSQTYAVRIGVDPAKLQARGLGVDTLTSAIADANSQVPIGTLQMANQSLTINAN- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                    +    +                N+   +  +  G 
Sbjct: 232 -------------------TQRTNAEEFKSLVISTSNGAPIHLSDVANVRDSVDNLDAGS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++        L+    P     V   +  +   +   
Sbjct: 273 WFDGKQAIILAIQRQPDANTVEVVDEIMAKLPALQKQLPPSLKINVMNDSSNSIREAIHD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+++   +    L+   ++ L++I T   + +LG ++   S+ G+ 
Sbjct: 333 VQFTLFLTIALVILVIYLFTGHLTATLIPGLAVPLSLIATFGGMYVLGYSIDNISLLGLT 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +      +   G      TI   +I+ +   + +   G
Sbjct: 393 LAVGLVVDDAIVMLENILRHVEEGMPPLQAALKGAGEVSYTIISMSISLVAVFIPILLMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F + + ++IL S   ++++   +   I  +     + +      F      
Sbjct: 453 GVVGRLFNEFGMVVTMAILSSALVSLTVTPMLAARISSHSSRPPLIVRWFDAGFAKTQSG 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             + +R       + ++  + SI             F     +
Sbjct: 513 YDKSVRWCLNHRFVVMMVFVASIAGSGWLFHTLPSSFFPQEDI 555



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 86/255 (33%), Gaps = 7/255 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      P+ LS V +  +S+   D        +   L   +    ++V     +    
Sbjct: 244 VISTSNGAPIHLSDVANVRDSVDNLDAGSWFDGKQAIILAIQRQPDANTVEVVDEIMAKL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAIT 698
             + + +P S   N         RE I      + ++   +++ I          L    
Sbjct: 304 PALQKQLPPSLKINVMNDSSNSIREAIHDVQFTLFLTIALVILVIYLFTGHLTATLIPGL 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L +  T G   + G   +  ++  +   +G  V+D +V+ + +   ++     +   
Sbjct: 364 AVPLSLIATFGGMYVLGYSIDNISLLGLTLAVGLVVDDAIVMLENI---LRHVEEGMPPL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFI 815
               K   E     +  S++     +P+ + GG V      F + +   I+ +A  S+ +
Sbjct: 421 QAALKGAGEVSYTIISMSISLVAVFIPILLMGGVVGRLFNEFGMVVTMAILSSALVSLTV 480

Query: 816 AAPILLFIYDWRAKN 830
              +   I    ++ 
Sbjct: 481 TPMLAARISSHSSRP 495



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 93/242 (38%), Gaps = 6/242 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            SN  +++  +         +     + +   D ++ +     + +  TEI   + +  + 
Sbjct: 780  SNFATVKRHNAPVTVNQTGQLVSTTVSFNLPDGISLSDATARIDQIKTEIGVPNDVFTSY 839

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                 I ++      + ++ + + + + + + ++ +   L  ++ L       L    L 
Sbjct: 840  GGTAAIFQQSQSNTGLLILAAVLTIYVVLGVLYESFIHPLTILSGLPAAAFGALLALKLL 899

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              + ++ A+  +L LIG    + +++ D   + ++ +    +    I ++        + 
Sbjct: 900  NFDMSVIALIGLLMLIGIVKKNAIMMIDVAVELIREH--GETPAKAIHEACVRRFRPIMM 957

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+  A +  LP+A+       +     I +  G++V+   ++FI   I + +  +     
Sbjct: 958  TTFCALLGALPIALGHGASSELRQPLGIAVVGGLIVSQLLTLFITPVIFVEMDRFGKFLT 1017

Query: 832  RI 833
            R+
Sbjct: 1018 RL 1019


>gi|297622023|ref|YP_003710160.1| putative multidrug resistance protein MdtC [Waddlia chondrophila
           WSU 86-1044]
 gi|297377324|gb|ADI39154.1| putative multidrug resistance protein MdtC [Waddlia chondrophila
           WSU 86-1044]
          Length = 1026

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 76/639 (11%), Positives = 173/639 (27%), Gaps = 47/639 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++ + +   GL+        Q  +   P                   + + V 
Sbjct: 9   RRPVMTTMVTAALLLFGLMA-----YRQLPISDLPDISFPV-------------ITVTVT 50

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +        ++    +      + S RQ    I + F  S+  +  +  V  
Sbjct: 51  NPGMDPETMANNVAVPLEQQLMTIPGIKSVISSSRQGNTTIVVQFDLSKDIDQASTDVNS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +   +  L   P           +  ++      + +    +      I     ++ + 
Sbjct: 111 AINNASGNLPPLPAPPSYKKFNPADTPVIYVAVTSEAMTMGKLYDYGYTI--IAQRLSML 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +                P +L  +     +++   V  N S  G       +  + 
Sbjct: 169 SGVSEVSIWGSKSNVRVKV-SPDKLAAMNIGINEIAEALVDSNQSLPGGTVYDASIAYTI 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                V       G   N      +      V DI           E       +   + 
Sbjct: 228 -----VPKGQVTEGAGYNQLIVAENQGNPVYVKDI----------GEGVDSIHDEGFYLR 272

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
              +            + +   +             +L           V          
Sbjct: 273 YWDKDKGEIPAVIVAVTKEDGANTVKLCNDVRDYLTVLEKQLPASIHLDVIFDRSIMIKE 332

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T  I   LV+ V+F+ +      ++   S+ +++  T A +   G ++ + S+
Sbjct: 333 SINDVLLTLVIAFILVVSVIFLFLGKASSTIIPSISLPVSIFGTFAFMYARGFSIDILSM 392

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L IG  VD  I+V E I    +  ++   +   G     +T+    ++     + L
Sbjct: 393 LGLTLVIGFLVDDAIVVLENIVRHQQMGKNPVQAALDGSKEISTTVLSMTLSLSAVFLPL 452

Query: 478 FFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSR 530
               G         A+ +  S+LIS   ++ +   +    + +   KS         + R
Sbjct: 453 VLMPGIIGRLFHEMAVVVVASVLISGSISLILTPMLCSRFLVHTDKKSRLEEKADRLMER 512

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              I +   I  MR R   + + +   + +  L  +   ++      G  LGV       
Sbjct: 513 LVAIYEPALIWVMRHRLVPILLGVASVVFAALLFKSVPTDFLPPGDTGAMLGVTLTSEEV 572

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +N +      +    +  +   +         + 
Sbjct: 573 SYDAMANRQDKVNKVLENNPYVDKVISMANFPELLPPNE 611



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 79/205 (38%), Gaps = 7/205 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
             +      + + +P S   +       + +E I   ++ ++I+ I ++  I++   K  
Sbjct: 301 NDVRDYLTVLEKQLPASIHLDVIFDRSIMIKESINDVLLTLVIAFILVVSVIFLFLGKAS 360

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +    +L + I  T  F    G   ++ ++  +  +IG+ V+D +VV + +   ++  
Sbjct: 361 STIIPSISLPVSIFGTFAFMYARGFSIDILSMLGLTLVIGFLVDDAIVVLENI---VRHQ 417

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
               +          E     +  +++     LP+ +  G +       A+ +   ++++
Sbjct: 418 QMGKNPVQAALDGSKEISTTVLSMTLSLSAVFLPLVLMPGIIGRLFHEMAVVVVASVLIS 477

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
            S S+ +   +         K +R+
Sbjct: 478 GSISLILTPMLCSRFLVHTDKKSRL 502



 Score = 40.8 bits (93), Expect = 0.94,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 52/130 (40%), Gaps = 6/130 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  +TTL   I   L    +F    +L A   ++ LIG  + + +++ +   + +    
Sbjct: 887  PLTILTTLPGSIFGGLLTLFVFQSSLSLYAFVGMIVLIGIVLKNGIMLVEFANEKVLE-- 944

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
                  + I ++        + T++AA +  LP+A+      S   S  + +  G++ A 
Sbjct: 945  -GKEVSEAIIEACKVRFRPILMTTIAAAMGALPIAIGIGADASSRRSMGLIILGGLLFAQ 1003

Query: 810  SSSIFIAAPI 819
              + F    I
Sbjct: 1004 MITYFFTPVI 1013


>gi|114563552|ref|YP_751065.1| acriflavin resistance protein [Shewanella frigidimarina NCIMB 400]
 gi|114334845|gb|ABI72227.1| acriflavin resistance protein [Shewanella frigidimarina NCIMB 400]
          Length = 1083

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 70/514 (13%), Positives = 149/514 (28%), Gaps = 43/514 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM-PKNRISLGLDLRGGSHLVLEV 60
           +    + +    +   G++        +  +   P    P   I    D           
Sbjct: 9   KRPVTVWMFMFAVMLFGMV-----GFSRLAVKLLPDLSYPSVTIRTAYD----------G 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    +E    +K         R   + + L F      +  + +V   + 
Sbjct: 54  AAPVEIEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTNMDMASLEVREKID 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISES 179
            +  +L +D  K LL+        I+    ++    +  ++Q       +   ++     
Sbjct: 114 TI--ELPLDINKPLLLRFNPNLDPIMRLAFSVPNADAEQLKQMRTFADEELKRRLEALSG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                 S  +  ++  E +  +L QL     ++                           
Sbjct: 172 VAAVRLSGGLEQEVHIELNQQKLSQLNLNADQVKRRINEE-------------------- 211

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +     I G             +   +  +     G           I        D
Sbjct: 212 NINLSAGKVIQGDKEYLVRTLNQFNSLDELGQVIIYRDGQTLVRLSDIAVISDAYKERSD 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +      +     +   +     +        +   +   KL  V          + 
Sbjct: 272 ITRIGEVESIELAIYKEGDANTVAVAQKLRSELEKINLANEHNKL-KVIYDQSEFIESAV 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +         + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ G
Sbjct: 331 NEVTSAALFGSLLAMLVIYLFLRDIIATLIISISIPFSVIATFNMMYFANISLNIMSLGG 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I L IGL VD+ I+V E I     +  S   +   G       IF S +T L   V L F
Sbjct: 391 IALAIGLLVDNAIVVLENIDRYKSQGMSKVEAAVTGCKEVSGAIFASTLTTLAVFVPLVF 450

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
                G      A+T+  ++L S+F A++ +  +
Sbjct: 451 VDGIAGALFADQALTVTFALLASLFVALTAIPML 484



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 85/251 (33%), Gaps = 4/251 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + +       V LS +    ++ +      +  + E   L   +    ++VA  + L 
Sbjct: 242 GQVIIYRDGQTLVRLSDIAVISDAYKERSDITRIGEVESIELAIYKEGDANTVAVAQKLR 301

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
              +KI      + ++        I   +       +  S +AML+           L  
Sbjct: 302 SELEKINLANEHNKLKVIYDQSEFIESAVNEVTSAALFGSLLAMLVIYLFLRDIIATLII 361

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  +S
Sbjct: 362 SISIPFSVIATFNMMYFANISLNIMSLGGIALAIGLLVDNAIVVLENI---DRYKSQGMS 418

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +       E  G    +++      +P+    G     FA   A  +  A  +S+F+A
Sbjct: 419 KVEAAVTGCKEVSGAIFASTLTTLAVFVPLVFVDGIAGALFA-DQALTVTFALLASLFVA 477

Query: 817 APILLFIYDWR 827
              +  +   +
Sbjct: 478 LTAIPMLASRQ 488



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 81/216 (37%), Gaps = 7/216 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +          +  +   ++ + +    S+IQ       +          + +++
Sbjct: 856  QQRVAIVSSNLAYGDLSEAVIEAQQILAKQQLPSSIQARFGGQNEEMEHSFDSLKIALVL 915

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    + G   ++     ++ L G  V
Sbjct: 916  AIFLVYLVMASQFESLLHPLLILIAVPMAVAGSIVGLFITGTHLSVVVFIGLIMLAGIVV 975

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+    +L    I     I+ +    L   + T++   + +LPMA+    G 
Sbjct: 976  NNAIVLVDRIN---QLRQEGIDKLTAINDAAQSRLRPIMMTTLTTTLGLLPMAIGIGDGS 1032

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V    AI + FG+ ++   ++ +   +       +
Sbjct: 1033 EVRAPMAITVIFGLSMSTLLTLLVIPALYALFDRKQ 1068



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 64/539 (11%), Positives = 161/539 (29%), Gaps = 69/539 (12%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL-- 58
            +R+    ++L  ++            LP+  ++  P       ++ G        ++L  
Sbjct: 580  LRHQVLTIVLALLVTLAS-----SCLLPKLGVELIP------PMNQG---EFYVEVLLPP 625

Query: 59   --EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-------------NKITLSFA 103
              EV E D V   LQ  +  ++   K                           ++ +  A
Sbjct: 626  GTEVSETDAV---LQQLALSIKDR-KDVKHAYSQAGSGGLMTSDTARGGENWGRLQVVLA 681

Query: 104  DSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS 163
            D      ++  +    + +  +L    +   L +           +  +       ++QS
Sbjct: 682  DPLAFNAVSQVLRNTAKNI-PELEAQIEHPELFSFKTP------LEIELSGYDLAQLKQS 734

Query: 164  MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
             + +   +            L   +  I +    D +RL  L      ++          
Sbjct: 735  ADQLVNALSDSDRFSDINTTLRDGQPEISIRF--DHARLAALGMDAPTVANRIAQRVGGT 792

Query: 224  KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
                F VR  +     +  + ++ +IS I       N         +     ++G     
Sbjct: 793  IASQFTVRDRKVDILVRSELSERDQISDIESLIINPNSAQPIPLSAIATIDLQIGPSAIN 852

Query: 284  EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343
             +++  +                          + ++     E       +L    LP  
Sbjct: 853  RISQQRV----------------------AIVSSNLAYGDLSEAVIEAQQILAKQQLPSS 890

Query: 344  LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
            +             S    K    +   LV +V+          L+   ++ + V  ++ 
Sbjct: 891  IQARFGGQNEEMEHSFDSLKIALVLAIFLVYLVMASQFESLLHPLLILIAVPMAVAGSIV 950

Query: 404  LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
             L + G  L++    G+++  G+ V++ I++ +RI +  ++      +++         I
Sbjct: 951  GLFITGTHLSVVVFIGLIMLAGIVVNNAIVLVDRINQLRQEGIDKLTAINDAAQSRLRPI 1010

Query: 464  FDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
              + +T  +  + +      G       AIT+   + +S    + ++ A+     R + 
Sbjct: 1011 MMTTLTTTLGLLPMAIGIGDGSEVRAPMAITVIFGLSMSTLLTLLVIPALYALFDRKQY 1069


>gi|218891495|ref|YP_002440362.1| putative Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa LESB58]
 gi|218771721|emb|CAW27495.1| probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa LESB58]
          Length = 1036

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/555 (11%), Positives = 159/555 (28%), Gaps = 32/555 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FGLLPVAPLPNVDFPAIV---------VSASLPGASPETMASSVATPLERSLGRIAGISE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S       + L F   +  +  A +V   + G  S L      N            +
Sbjct: 80  MTSSSSLGSTTVVLVFDLEKDIDGAAREVQAAINGAMSLLPSGMPNNPSYRKANPSDMPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    +        E           ++   +   Q       L  +  + +P  + Q  
Sbjct: 140 MV-LTLTSETQSRGEMYDLASTVLAPKLSQVQGVGQVSIGGSSLPAVRVDLNPDAMSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N++                    +    E                  
Sbjct: 199 LSLDSVRTAIAAANSNGPKGAVEKDDKHWQVDANDQLRKAREYE---------------- 242

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
              + I ++              +   +  V +            I + +   +     +
Sbjct: 243 --PLVIHYNADNGAAVRLGDVAKVSDSVEDVRNAGFSDDLPAVLLIVTRQPGANIIEATD 300

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                  +L+    P     V +    +   S    + T  I   LV++V+F+ +  G+ 
Sbjct: 301 AIHAQLPVLQELLGPQVKLNVMDDRSPSIRASLEEAELTLLISVALVILVVFLFLRNGRA 360

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ +++I T A++ L   +L   S+  +++  G  VD  I+V E I     +  
Sbjct: 361 TLIPSLAVPVSLIGTFAVMYLCDFSLNNLSLMALIIATGFVVDDAIVVVENIARRIEEGD 420

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
               +   G  +   T+    ++ +   + L   G   G   R FA+T+  +IL+S+  +
Sbjct: 421 PPIQAAITGARQVGFTVLSMTLSLVAVFIPLLLMGGLTGRLFREFAVTLSAAILVSLVVS 480

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +++   +   +      +    +   R         +++  +  W +  S L  +  +  
Sbjct: 481 LTLTPMLCARL-LRPLKRPEGASLARRSDRFFAAFMLRYRASLGWALEHSRLMVVIMLAC 539

Query: 564 LFTHGLNYGIDFKGG 578
           +  +   + +  KG 
Sbjct: 540 IAMNLWLFVVVPKGF 554



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 68/205 (33%), Gaps = 6/205 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +V  Q       A   +   +      + P   +   +   P I   L    +  +I  A
Sbjct: 286 IVTRQPGANIIEATDAIHAQLPVLQELLGPQVKLNVMDDRSPSIRASLEEAELTLLISVA 345

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L     N  ++ A++   G+ V+D 
Sbjct: 346 LVILVVFLFLRNGRATLIPSLAVPVSLIGTFAVMYLCDFSLNNLSLMALIIATGFVVDDA 405

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +                 +     +  +++     +P+ + GG      
Sbjct: 406 IVVVENI---ARRIEEGDPPIQAAITGARQVGFTVLSMTLSLVAVFIPLLLMGGLTGRLF 462

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPI 819
             FA+ ++  I+V+   S+ +   +
Sbjct: 463 REFAVTLSAAILVSLVVSLTLTPML 487


>gi|146302036|ref|YP_001196627.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein
           [Flavobacterium johnsoniae UW101]
 gi|146156454|gb|ABQ07308.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Flavobacterium johnsoniae UW101]
          Length = 1054

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 73/644 (11%), Positives = 168/644 (26%), Gaps = 53/644 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +     L+I     L +  L +FP   P               +++   
Sbjct: 7   QRPVLATVISIL-----LVILGVLGLTKLPLQQFPDIAPP-------------SVLVTAV 48

Query: 62  EDDFVNGFLQMYSDE-LRSFLKK-EGIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                   +       +   +   E +   S     +    IT+ F      +  A  V 
Sbjct: 49  YPGANAETVLRSVAPSIEESINGVENMTYMSSTASNDGTLAITVFFKLGTDADQAAVNVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-VISHAIEQSMEIIRQRIDQIG 175
             +    S+L  +  +  +VT  ++   I+      D          +       I ++ 
Sbjct: 109 NRVAQATSQLPAEVVQQGIVTAKQQNSFIMAIGMYTDDEAKYDQTFVANYAQINIIPELK 168

Query: 176 ISESTIQRLGS-HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                             +    +P+++     T +++       +       FG R   
Sbjct: 169 RIPGVGSASIFGGVKDYSMRVWLNPTQMSTYKVTPSEVMGAIQDKSLEAAPGKFGERSKE 228

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                +Y+++ K +++             K                         +    
Sbjct: 229 V---FEYVIKYKGKLT-------------KPEDYENIAIRSNADGSVLRLKDVARVELGA 272

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L             A  + N        +             + +      +
Sbjct: 273 YSYNSLTRLNGKKGIVIGVIQLAGSNSNDIQIAINKMMEKASKDFPKGIKHNIFYSTKVS 332

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S    + T      LV IV+F+ +   +  L+   ++ + ++ T   + L G ++ L
Sbjct: 333 LDQSIEQVEHTLLEAFILVFIVVFIFLQDFRSTLIPAIAVPVAILGTFFFMQLFGFSINL 392

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++  ++L IG+ VD  I+V E +  +    + S   +           I    +     
Sbjct: 393 LTLFALILAIGIVVDDAIVVVEAVHAKMEHKRLSPKIATHEAMHEITGAIISITLVMAAV 452

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + + F  G      R FA TM ++I+IS   A+++  A+            +  N  + 
Sbjct: 453 FLPVGFMEGSTGVFYRQFAFTMAIAIVISAVNALTLSPALAALF--------LKDNHGAH 504

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               P        +            +      L        +   G   + +     V 
Sbjct: 505 DHNEPYQKKGFKEKFFTAFNSSFESLTNRYTGGLKFLIRRKWLSLGGLALITLATVVMVK 564

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +         Q       N     +     +           +
Sbjct: 565 TTPQGFIPTEDQGFIAIAVNTPSGTSLDGTQKVMTEAENTLKAL 608



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 89/237 (37%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V          +   +    +   +  +Q    +S      +  + +K ++  P     
Sbjct: 264 DVARVELGAYSYNSLTRLNGKKGIVIGVIQLAGSNSNDIQIAINKMMEKASKDFPKGIKH 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N          + I +    ++ + I + I ++I    +   L     + + I  T  F 
Sbjct: 324 NIFYSTKVSLDQSIEQVEHTLLEAFILVFIVVFIFLQDFRSTLIPAIAVPVAILGTFFFM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   NL  + A++  IG  V+D +VV + +    K+    +S +    ++++E  G 
Sbjct: 384 QLFGFSINLLTLFALILAIGIVVDDAIVVVEAVH--AKMEHKRLSPKIATHEAMHEITGA 441

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  ++      LP+    GS       FA  MA  IV++A +++ ++  +      
Sbjct: 442 IISITLVMAAVFLPVGFMEGSTGVFYRQFAFTMAIAIVISAVNALTLSPALAALFLK 498



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/200 (15%), Positives = 63/200 (31%), Gaps = 9/200 (4%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            + +K                    +   E+   G    I     + IY  +      +  
Sbjct: 844  DAIKAIEEVAAQQLPAGYGFEFSGQTREEISSGGQSATIFLLCLIFIYFLLAAQYESYIL 903

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  I ++   I        L GIE N+    A++ LIG    + +++ +      +   
Sbjct: 904  PLAVILSIPAGIFGVFVAIGLTGIENNIYVQVALVMLIGLLAKNAILIVEFA---AQRRR 960

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAA 809
            +          +    L   + TS+A  + ++PM    G         +I  A G++   
Sbjct: 961  SGQGLAAASIMAAKLRLRPIIMTSLAFVVGLVPMMSAKGPSAQGNHSISIGAAGGMLSGV 1020

Query: 810  SSSIFIAAPILLFIYDWRAK 829
               +FI   + +     + K
Sbjct: 1021 ILGLFIIPVLFIIFQHLQEK 1040


>gi|300858591|ref|YP_003783574.1| protein-export membrane protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686045|gb|ADK28967.1| protein-export membrane protein [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206303|gb|ADL10645.1| Protein-export membrane protein secD [Corynebacterium
           pseudotuberculosis C231]
 gi|302330860|gb|ADL21054.1| Protein-export membrane protein secD [Corynebacterium
           pseudotuberculosis 1002]
 gi|308276545|gb|ADO26444.1| Protein-export membrane protein secD [Corynebacterium
           pseudotuberculosis I19]
          Length = 622

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 111/595 (18%), Positives = 216/595 (36%), Gaps = 59/595 (9%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
              L   I  I ++ AL            P         LG+DL+GG+ + L     +  
Sbjct: 17  KRALALFILIIAVIYAL--IFATGDHKATP--------KLGIDLQGGTRVTLVPQGANPT 66

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR--FKENIADKVTLFLQGVNS 124
           +  L+     L + +   G+   S+    N + ++           +     L  + V +
Sbjct: 67  DEQLRQARMILENRVNGMGVSGASVVTDGNTLVITVPGEDTSQARALGQTSQLLFRPVAT 126

Query: 125 KLNVDPKKNLLVTTTEK----EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ-IGISES 179
               D  K L            I ++ +      + + +   +    ++  D       +
Sbjct: 127 PAQPDTAKLLDSLEAMANRWVSIGVLNADEANTALENTSKALAKSQGKEEKDAKAPKVTA 186

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP-------------------- 219
                 ++ I  +   ++    L++   +T   +                          
Sbjct: 187 AAPETPANSIEAEAFRKKVIDALKKDRQSTDATTQLAASSLLKCTDQPDPLQGTDEAALP 246

Query: 220 ---NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA-------NFDPKTHKPV 269
               +   G ++ +  +    G     +D   ++G  ++                     
Sbjct: 247 LVTCDPSSGRVYVLDPVPTLIGENPEAKDAKRLTGNEIDTNRPITGGLNSQTGQMEIGFS 306

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQISGNFTIETA 328
                 + G+  + ++T+  + K +A+ LD ++++APVI           I+G+F+ + A
Sbjct: 307 FKSENGDQGSATWADLTQKYLQKQVAITLDSQIISAPVIQSPTPVGSATSITGSFSQQEA 366

Query: 329 GILAAMLRAGSLPIKLNIVEER------NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
             LA  L+ G+LP+               V A LG+ S+  G  A + GL L+  F    
Sbjct: 367 QELANNLKYGALPLSFAGENGESGGTTITVPASLGTASLKAGLIAGLVGLALVAAFSFYF 426

Query: 383 YGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           Y  +G+++ FS+F +  L    L LL    G +L L  IAG+++GIG   DS +++ ERI
Sbjct: 427 YRFFGIISIFSLFTSFALVYGSLVLLGRWIGYSLDLAGIAGLIIGIGTTADSFVVLYERI 486

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
           ++E R  ++   ++  G+ RA  TI   N   LI  V+++    G V+GFA T+GL+ L 
Sbjct: 487 KDEVRDGRTFRSAVPRGWERAKQTIITGNAVTLIGAVIIYILAVGDVKGFAFTLGLTTLF 546

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
            +     +   ++  +   K   +                  Q  + R   V  S
Sbjct: 547 DIVVTFLVTAPLV-IMASRKPWTAQPSANGMGKIFKIAQQREQERKLRETTVADS 600



 Score = 89.8 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 67/230 (29%), Gaps = 32/230 (13%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +     Q         +               +   T  V   +    ++ G++ 
Sbjct: 352 GSATSITGSFSQQEAQELANNLKYGALPLSFAGENGESGGTTITVPASLGTASLKAGLIA 411

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++    +  +    F  +F + +I +L        G   L G              IGY
Sbjct: 412 GLVGLALVAAF-SFYFYRFFGIISIFSLFTSFALVYGSLVLLGR------------WIGY 458

Query: 733 SV----------------NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           S+                +  VV+Y+R++  ++      +FR  + +         +  +
Sbjct: 459 SLDLAGIAGLIIGIGTTADSFVVLYERIKDEVRD---GRTFRSAVPRGWERAKQTIITGN 515

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               I  + + +     +  FA  +    +     +  + AP+++     
Sbjct: 516 AVTLIGAVIIYILAVGDVKGFAFTLGLTTLFDIVVTFLVTAPLVIMASRK 565


>gi|192291221|ref|YP_001991826.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
 gi|192284970|gb|ACF01351.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
          Length = 1043

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 57/516 (11%), Positives = 135/516 (26%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +   GLL           +   P                     L   
Sbjct: 9   RRPIATSLLGVALMIGGLL-----GYLALPVSALPQVDFPTVQ---------VSTQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    +     +        +     ++++L F  +R  +     V   +  
Sbjct: 55  SPDVVASLITAPLERQLGQIPSLTAMTSTSSYGVSQVSLQFDLNRDIDGATQDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V++   +          S         ++       
Sbjct: 115 AAGILPKNLPYPPVYAKVNPADAPVMT-LALTSTTVSLRTMSDLADTLMAQRLAQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +  + D +RL     +   +       N S             +     
Sbjct: 174 RVSVLGGLKPAVRVQADLARLAAYGISMEDLRTAIANANVSGPKGSLDGAQQAYTIAAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            I                 I   L     G 
Sbjct: 234 QIAAA--------------------DAYRPIIVAYRNGSPVTIGDVAQIVDGLENERTGA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++        ++          V          S   
Sbjct: 274 WYQGTPSVILDIQRQPGANVIDVVKGIRAEIPRIQRLVPTGVKLTVVSDRTETIRASVHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV +V+ + +   +  ++A  ++ L++I +  ++  +G +L   S+  + 
Sbjct: 334 VQFTLLLSVVLVTLVVLLFLRSMRATIIAGVALPLSLITSFGVMYFMGFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +G G  VD  I++ E I       +S   +   G S    T+    ++ +   + L F  
Sbjct: 394 IGTGFVVDDAIVMIENIVRHMEDGESPMQAALKGASEIGFTVISLTMSLMAVFIPLLFMS 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R FA+T+ ++++ S   ++++   M   +
Sbjct: 454 GLVGRMFREFALTLTIAVVTSAIVSLTLTPMMCSRL 489



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSMRATIIAGVALPLSLITSFGVMYFMGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      S      K  +E     +  +M+     +P+    G V      FA+ +   
Sbjct: 411 VRHMEDGESPMQAALKGASEIGFTVISLTMSLMAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAA 817
           +V +A  S+ +  
Sbjct: 471 VVTSAIVSLTLTP 483



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 76/225 (33%), Gaps = 6/225 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                  V  S +  L+            +   V + +      +    L+ ++    +I
Sbjct: 774 PGNAGAQVPISAVAELKRTIAPLAISHQAQFPSVAMSFNLAPDASLGEALKRIETIEKQI 833

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD-- 703
               +I            + +      ++ + +A+ I + + ++ Y     I + +    
Sbjct: 834 GMPGSIVGVFYGDAAEFSKALAGQPWLILAAIVAIYIVLGVLYESYIHPITILSTLPSAG 893

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L    LFG + ++  +  ++ L+G    + +++ D   +        +S  + I +
Sbjct: 894 VGAILALM-LFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALE--AERGQRMSSYEAIVQ 950

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +        + T++AA    LP+A+           P+   I+  
Sbjct: 951 ACRLRFRPIMMTTLAALFGALPLAI-ESGTGSELRFPLGISIIGG 994


>gi|149279482|ref|ZP_01885612.1| cation efflux protein [Pedobacter sp. BAL39]
 gi|149229775|gb|EDM35164.1| cation efflux protein [Pedobacter sp. BAL39]
          Length = 1042

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 66/586 (11%), Positives = 174/586 (29%), Gaps = 42/586 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++++++   G+         QS      + +PK ++++          V    
Sbjct: 9   KRPLLITVIFTVLILFGV---------QSYFKLNYNLLPKIQVNV-----VSISTVYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       + ++  ++I+++       +     +      
Sbjct: 55  SAAEVETAVTKKLEDAFSSVEGLDQISSTSQEGISQISVTLKSDADIDKAERDIQRKADQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D  K  +   + +E  ++ +            +    I +Q    +       
Sbjct: 115 AQNDLPDDIDKPQVNKISLEETPVIRAGVTSTLAPRSLFDV---IDKQIKPVLQNIPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         Q+    D ++L+       +++      N S        +  + S     
Sbjct: 172 QVNIIGGDERQIQVNIDQAKLKGYNLGIEQVTQAVANANLSFPAGSIETKAQQLSIRYDA 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            VE   ++  + ++  T                      + +      +    A      
Sbjct: 232 NVESIDQLRDLVVSSRTQ-------------------GGKVYLRDIAEVVDATAKTTAIN 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV-EERNVGADLGSDS 360
            +            ++  +     +        L+       L            L S  
Sbjct: 273 HINGIPSIGVQVIKQSDANAVDVSKLVKAEFTELQNRYKSQGLKFEISSDQSTYTLSSAH 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   +V IV+   +   +  L    ++  ++I T  ++ L+G +L L ++  +
Sbjct: 333 AVMEDLVLAILIVGIVMLAFLHSLRSSLFVLVALPASIIPTFIIMYLMGFSLNLMTLMAM 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD +I+V E I            +   G +    T     +  ++  + L   
Sbjct: 393 SLVVGILVDDSIVVLENIYRHLEMGSEKRKAALDGRNEIGFTALAITLVDVVVFLPLAMS 452

Query: 481 GGGAV---RGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
           GG      R F++ +  S L+S+  + +I   +      I     K++            
Sbjct: 453 GGIIGAILREFSLVVVFSTLMSLMVSFTITPMLASRFGKIEVMNPKTLWGRINLALENFI 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           D + + + +   + +          I L+    +     F G   +
Sbjct: 513 DNLKLDYAKFLRYTLDKKRYLLSGVILLIIGALMLLAKGFIGATFI 558



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 88/291 (30%), Gaps = 11/291 (3%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           +             L                L V +        +R   E +     +  
Sbjct: 211 LSFPAGSIETKAQQLSIRYDANVESIDQLRDLVVSSRTQGGKVYLRDIAEVVDATAKTTA 270

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                    + +Q           V ++VK + TE+      Q  +              
Sbjct: 271 INHINGIPSIGVQVIKQSDANAVDVSKLVKAEFTELQNRYKSQGLKFEISSDQSTYTLSS 330

Query: 670 IVGV----IISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              V    +++ + + I +         +L  +  L   I  T     L G   NL  + 
Sbjct: 331 AHAVMEDLVLAILIVGIVMLAFLHSLRSSLFVLVALPASIIPTFIIMYLMGFSLNLMTLM 390

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A+  ++G  V+D +VV + +    +        R       NE    ++  ++   +  L
Sbjct: 391 AMSLVVGILVDDSIVVLENI---YRHLEMGSEKRKAALDGRNEIGFTALAITLVDVVVFL 447

Query: 785 PMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+A+ G   G+++  F++ + F  +++   S  I   +          N +
Sbjct: 448 PLAMSGGIIGAILREFSLVVVFSTLMSLMVSFTITPMLASRFGKIEVMNPK 498



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 71/166 (42%), Gaps = 7/166 (4%)

Query: 671  VGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++ + + + LI + +     +    + ++ + +   L   AL     N+ ++  V+ L
Sbjct: 866  LALVTAILLVYLIMVALYESLVYPFVVLFSIPVALIGALLALALAMETLNIFSIIGVIML 925

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ D      +L       +D + ++  E L   + T++A  + +LP+A+ 
Sbjct: 926  LGLVSKNAILIVDF---TNQLKAEGHELKDALVEAGKERLRPILMTTLAMILGMLPIALA 982

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +    A  +  G+  +   ++F+   + L I     K +R
Sbjct: 983  SGSGAEIKNGMAWVIIGGLTSSMILTLFVVPAMYLIIEKLILKFSR 1028


>gi|294625327|ref|ZP_06703964.1| RND superfamily protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292600396|gb|EFF44496.1| RND superfamily protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 1169

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 79/602 (13%), Positives = 169/602 (28%), Gaps = 52/602 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 30  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 75

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 76  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 135

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ K  +L+        I+        +  +    I                ++
Sbjct: 136 L--SLPLETKPPVLLRFNPSTEPIMRLALSPKQAPASDTDAIRQLTGLRRYADEDLKKKL 193

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 194 EPVAGVAAVKVGGGLEDEIQVDIDQQKLTQLNLPIDNVITRLKEENVNISGGRLEEGSQR 253

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 254 YLVRTVNQFVDLDEIRNMLVTTQSSSGSAAEAAMQQMYAIAASTGSQAALAAAAEVQSTS 313

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              S    G           + +          L      +     +   +   T     
Sbjct: 314 SSSSSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKEAVELAIYKEGDANTVSTAAALR 373

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 374 KRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 433

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +  SV 
Sbjct: 434 ISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLSVL 493

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
            +   G       +  S +T +   + L F     G   R  A+T+ ++I IS+  ++++
Sbjct: 494 DAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLVVSMTL 553

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           +  M+  +     M   D     ++      +       R  G  +   F   +  ++  
Sbjct: 554 IP-MLSSLKGAPPMAFPDEPSHPQWQPEQRWLKPVAAGRRGAGASVRYGFFGAAWAVVKV 612

Query: 567 HG 568
             
Sbjct: 613 WR 614



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 6/207 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           + + +++    +     I   E     I   +       VI 
Sbjct: 354 ELAIYKEGDANTVSTAAALRKRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIG 413

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 414 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVD 473

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +S  D       E     + +++      LP+       G 
Sbjct: 474 DSIVVLESI---AKARERGLSVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 530

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    A+ +A  I ++   S+ +   +
Sbjct: 531 LFRDQALTVAIAIAISLVVSMTLIPML 557



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +     D      V E+      + +      +  
Sbjct: 910  AAVAEVLATTGPSEIHRADQTRVAIVSASLKDIDLGGAVREVETMVRKDPLAAGVGMHIG 969

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 970  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 1028

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+G    + +++ D++    +L    +  R+ + +     L   + 
Sbjct: 1029 GKPISVVVFIGLILLVGLVTKNAIILIDKVN---QLREDGVPKREALIEGARSRLRPIIM 1085

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            T++      LP+AV    G  V    AI +  G
Sbjct: 1086 TTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1118


>gi|225620357|ref|YP_002721614.1| putative acriflavin resistance protein [Brachyspira hyodysenteriae
           WA1]
 gi|225215176|gb|ACN83910.1| putative acriflavin resistance protein [Brachyspira hyodysenteriae
           WA1]
          Length = 1032

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 79/643 (12%), Positives = 191/643 (29%), Gaps = 53/643 (8%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
              +  +G +      +        P                      E    + V   +
Sbjct: 1   MIAVLILGFVSLSKLAVDFLPDMELPYIT--------------VSTEYENAGPEEVEKSV 46

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               +   + +        +  + ++ + + F            V   + G+ + L  D 
Sbjct: 47  TRIVENAVATVSDINTITSTSEEGKSSVFIEFNWGTDLAVATADVREAIDGIKNSLPDDA 106

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
               ++  +     I+                   I  Q +++I  +    +      + 
Sbjct: 107 DSPTVLKFSTDMTPIMEIAFFGTDN---LGALYTLIDNQILNKIEQASGVARAEIRGGLK 163

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            ++  +   +RL         +       N +  G        + +           +I 
Sbjct: 164 TEMKVDLVLNRLHAYGIDINSIVSLLSSENQNLSGGDTYEGVYKYTLRTMGEFTTPEDIE 223

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
              +   T                               + +  +   +   +       
Sbjct: 224 NTVVALKT-------------------NDTPIKLKDIGRVYQGYSDDSEIVKINGMPAIS 264

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
              + ++  +     +      A L           +   +      + +    T     
Sbjct: 265 VSVNKESGGNSVNVSKAVKRQLANL--NLPEGVEYEILFNSADNVNEAINGVLDTAWQGG 322

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
              +I+L + +   K   +   SI +++I+T  L+  +G TL + S++G+VLGIG+ VD+
Sbjct: 323 LFAVIILMLYLWNVKTVSIIAVSIPISIIITFTLMYFMGITLNIISLSGLVLGIGMMVDN 382

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRG 487
           +I+V E I          + S   G S     I  S +T +   +   F     G   R 
Sbjct: 383 SIVVLENIFYYRNNGYGKYSSAINGTSTVALAISASTLTTIAVFLPFLFVEGQTGQLFRD 442

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF----- 542
             IT+ +S++ S+F A++IV  +   ++  KK K +              I   +     
Sbjct: 443 LCITVTVSMIGSLFVALTIVPMLGARLVTNKKTKFLIPIENFVNDKFHSKINNLYSNLLS 502

Query: 543 ----MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                + + +   +S++F I  + L+F     +    +G  ++ V           ++ +
Sbjct: 503 YSIKNKKKVFISSLSVVFVIIILGLIFIGKEGFPTSDEGQFKIEVKMPVGTKSEQTQAFI 562

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                 +   Q+  GE    ++ + + G       +   +++K
Sbjct: 563 T---RMEGDIQDAIGEDFDRMQSRVKSGSEENAAEIRVQLREK 602



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 75/198 (37%), Gaps = 7/198 (3%)

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
            ++    + E V    + N+     +    ++     G + + I +++Y+W       ++
Sbjct: 284 RQLANLNLPEGVEYEILFNSADNVNEAINGVLDTAWQGGLFAVIILMLYLWNV--KTVSI 341

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A+ ++ + I  T       GI  N+ +++ ++  IG  V++ +VV + +          
Sbjct: 342 IAV-SIPISIIITFTLMYFMGITLNIISLSGLVLGIGMMVDNSIVVLENIFYYRNNGY-- 398

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
             +   I+ +    L  S  T +      LP     G     F   +   + V+   S+F
Sbjct: 399 GKYSSAINGTSTVALAISAST-LTTIAVFLPFLFVEGQTGQLFR-DLCITVTVSMIGSLF 456

Query: 815 IAAPILLFIYDWRAKNAR 832
           +A  I+  +      N +
Sbjct: 457 VALTIVPMLGARLVTNKK 474



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 104/311 (33%), Gaps = 12/311 (3%)

Query: 521  KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
            + I          I + I   F       +  +          +     +          
Sbjct: 701  REIAAKMGINVNTIANIIKTSFAGTTATTMTPANSDVTDIDVNVQLGEPDRLKIDDISRL 760

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +       V +S + +  +S    +I  ++             +    + Q     +  K
Sbjct: 761  MIPTTAGIVPISSIATVEKSYGPTEIERKDSTRITTIKASAYNRALSEIMQDVQENISSK 820

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                               +   +LI+  I+ +++    +   +  +F+ + A   +  L
Sbjct: 821  VFLPSGFTINYAGDFEDMKEAFLQLIQAFILALVL----VYAIMASQFESFIAPF-VIAL 875

Query: 701  ILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             +         ALF      ++ +    + LIG  VN+ +V+ D M  N  ++  +I+  
Sbjct: 876  AIPFGFAGSLLALFIGRQTLSVYSGIGFIVLIGIVVNNGIVLIDYM--NQLMHEKNINGD 933

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFI 815
            +   +S    L   + T++   + +LPMA+ GG    +    +I +  G++V+ + ++ I
Sbjct: 934  EAALESGPRRLRPVLMTTLTTILGLLPMALSGGSGNEMYQPLSIAILGGLLVSTAFTLII 993

Query: 816  AAPILLFIYDW 826
               +   I + 
Sbjct: 994  VPTVYAAIRNK 1004


>gi|150372999|dbj|BAF66265.1| multidrug efflux transporter VexB [Vibrio cholerae]
          Length = 1026

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 73/597 (12%), Positives = 176/597 (29%), Gaps = 52/597 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAIF-----KMQVREYPEMTNTVIT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      +++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNELASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  + A +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++  + +               V ++                            
Sbjct: 233 QVSTVEDLESLVVKAEKGTVTRLGDIAKVTLANGRE------------------------ 268

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 269 ------AVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHE 322

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 323 VIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV 382

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   G
Sbjct: 383 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMG 442

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLIP 535
              G   + FA+T+  S+ +S   A+++   M   +           + ++ L       
Sbjct: 443 GITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTAR 502

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               +  + A    V         S+ +LF    +     +    + ++   P + +
Sbjct: 503 YERMLTAVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNAN 559



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 60/489 (12%), Positives = 136/489 (27%), Gaps = 12/489 (2%)

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                         +  IV   +  +  M V           ++        A L     
Sbjct: 4   TDVFIKRPVLAVSISFLIVLLGLQAIFKMQVREYPEMTNTVITVSTGYYGASADLIQGFI 63

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           T  L         I      ++L    I    + N     +L    ++  S    S +  
Sbjct: 64  TQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS--VRSQLPK 121

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
                 +    G       I    + L S      + R +   +     + SID+    +
Sbjct: 122 EAEDPTVTMSTGSTTAVLYIGFTSNELASSQITDYLERVVNPQLYAVNGVSSIDLYGGMK 181

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
           + L       +          +  + +  +        +   + + G     V     ++
Sbjct: 182 YALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADTQVSTVEDLE 241

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             VV++   ++       +         V        S     + + V + + E+     
Sbjct: 242 SLVVKAEKGTVTRLGDIAKVTLANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMP 301

Query: 651 IQNTEIVGPKISRELIRKG----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                 V    +  +           V  + I +++           L  I T+ L +  
Sbjct: 302 SNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIG 361

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                 + G  +NL  + A++  IG  V+D +VV + +    +      S          
Sbjct: 362 VAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGTR 418

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   +
Sbjct: 419 EIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKM 478

Query: 824 YDWRAKNAR 832
                   +
Sbjct: 479 LKANEAPNK 487



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 67/183 (36%), Gaps = 7/183 (3%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             + + +G           +     ++   + + + I+F+     L  + ++ L I   L 
Sbjct: 820  YSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVPLAICGALI 879

Query: 710  FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              A      N+ +   ++TL+G      +++ +  ++        +S  + +  +    L
Sbjct: 880  ALAWSTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIEAVMHAAKVRL 937

Query: 770  GRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDW 826
               + T+ A    ++P+    G      F+I +    G+ +    ++F+   I  ++ + 
Sbjct: 938  RPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPVIYSYLAEK 997

Query: 827  RAK 829
               
Sbjct: 998  HKP 1000


>gi|283457997|ref|YP_003362604.1| preprotein translocase subunit SecD [Rothia mucilaginosa DY-18]
 gi|283134019|dbj|BAI64784.1| preprotein translocase subunit SecD [Rothia mucilaginosa DY-18]
          Length = 563

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 105/524 (20%), Positives = 189/524 (36%), Gaps = 50/524 (9%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-----D 63
           +L  ++   G+                    P     L LDL GG+ ++L         +
Sbjct: 18  VLLMVVMAAGIFGTTYAGGS---------WAP----KLALDLSGGTQMILSPKVNGSSDE 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQ 120
           +     L    + +R  +   G+    +       N + +S   +   E           
Sbjct: 65  NVSQEQLNQAVEIIRQRVDGAGVSEAEVTTSFGSGNNVVVSVPGTISAE----------- 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      + L+  +       VL       V   A     ++ +   +    S+  
Sbjct: 114 ----------TRQLIQASANMTFRPVLLSGAGTAVAEDARTADDKLPKPSAEPTNGSDRN 163

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                 ++           +  R     +A  +   V  +   +                
Sbjct: 164 WITADLYKQYEAKDC----TAARNEDADSADPTKPMVACSTDGQEKYILGPVELSGSDIS 219

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                +         G  A                            ++     A++LDG
Sbjct: 220 TASHSQETSGQGVTTGRWAVNIQFNDAAREKFQNITSRLNAIRAQNANDPRARFAILLDG 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           +VL++PV    I  GK QI+GNFT + A  LA  L+ G+LPI   I  E+ + A LGS+ 
Sbjct: 280 KVLSSPVSQAVISDGKPQITGNFTEQEAKALADQLKYGALPISFTIQSEQQISATLGSEQ 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT----LPS 416
           +  G    + GL+L+ ++ +  Y   G V   S+ +  I++   ++LLG  L     L  
Sbjct: 340 LRVGLLTGLIGLLLVFVYSLFQYRLLGFVTMMSLVVAGIISYEAIALLGWALNYRLSLAG 399

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +AG+++ IG   DS I+  ERIR+E R  +++  +++ G+ RA  TI  S    L+A VV
Sbjct: 400 VAGLIVAIGATADSFIVYFERIRDEIRAGRTIPSAVNHGWQRASRTILASKAVNLLAAVV 459

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           L+    G+V+GFA T+GL+ +  +         M+  +   +  
Sbjct: 460 LYVVSVGSVKGFAFTLGLTAIADLVVVYLFTHPMLTLLSNTRYF 503



 Score = 89.0 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 77/210 (36%), Gaps = 8/210 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G+   Q       + K   +    TIQ+ + +   +  E +R G++  +I  + + 
Sbjct: 296 PQITGNFTEQEAKALADQLKYGALPISFTIQSEQQISATLGSEQLRVGLLTGLIGLLLVF 355

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN----LTAVAAVLTLIGYSVNDK 737
           +Y   +++       + +L++    +    AL G   N    L  VA ++  IG + +  
Sbjct: 356 VYSLFQYRLL-GFVTMMSLVVAGIISYEAIALLGWALNYRLSLAGVAGLIVAIGATADSF 414

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +V ++R+R  ++      +    ++          + +     ++ + + V     +  F
Sbjct: 415 IVYFERIRDEIRA---GRTIPSAVNHGWQRASRTILASKAVNLLAAVVLYVVSVGSVKGF 471

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           A  +    +           P+L  + + R
Sbjct: 472 AFTLGLTAIADLVVVYLFTHPMLTLLSNTR 501


>gi|116624394|ref|YP_826550.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227556|gb|ABJ86265.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1046

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 72/591 (12%), Positives = 156/591 (26%), Gaps = 40/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G +           +   P+      +             L    
Sbjct: 10  RPIATSLLMAAIALFGSVA-----YRSLAVSDLPNVDFPTLL---------VTAALPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +   S +        S      +ITL F  +R  +  A  V   +   
Sbjct: 56  PETMAAAVATPLENQFSTIAGLNSMSSSNSLGNTQITLEFDLARRLDGAAVDVQAAITQA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L          T        VL    +                +   +I +     Q
Sbjct: 116 SRLLPQGMPTPPTFTKVNPADQPVLY-LALTSPTLPLWTLDEYAETRIAQRISMISGVAQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  + DP  L        ++       N +             +      
Sbjct: 175 VQVLGAQKYAVHVQMDPHALASRQIGINEIETALKNWNVNLPTGSIIGPQRAFTLQASGQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + +                  +    VV                 D++          + 
Sbjct: 235 LLNA----------------DQYRPVVVAYRNGSPVRLDELGTVLDSVEDDKTASWFYKD 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +     +    L  + R    P     +          S    
Sbjct: 279 KFNSRAIILAIQRQPGTNTIAVTDGVKNLIPLFRTELPPSVHMDILYDRSDTIRESFGDV 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T  +  GLV++V+F+ +      ++   ++  ++I T A++ LL  +L   S+  ++L
Sbjct: 339 KFTMVLTLGLVVMVIFLFLRNVSATIIPSLALPFSIIGTFAVMYLLDYSLDNLSMMALIL 398

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG  VD  I++ E I       +    +   G +    TI    ++     + + F G 
Sbjct: 399 SIGFVVDDAIVMLENIVRHIEMGEQPLLASLKGSNEIGFTIVSMTLSLAAVFIPVLFLGG 458

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G   + FA+T+ ++ILIS   ++++   +                 +I          
Sbjct: 459 VLGRLFKEFAVTITVAILISGVVSVTLTPMLCSRFLKAAHEHSRGWFYNITEKFFDGMLH 518

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             D      +R R + +   ++    +  +  T    +  D        + 
Sbjct: 519 TYDVTLKMALRHRVFMMVSFVVVLGATGYMFVTIPKGFIPDQDTDQMSVIT 569



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 73/205 (35%), Gaps = 8/205 (3%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISA 677
           ++ Q           V  ++    TE+ P   +         I           V+ +  
Sbjct: 289 IQRQPGTNTIAVTDGVKNLIPLFRTELPPSVHMDILYDRSDTIRESFGDVKFTMVLTLGL 348

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + M+I++++R      +     L   I  T     L     +  ++ A++  IG+ V+D 
Sbjct: 349 VVMVIFLFLR-NVSATIIPSLALPFSIIGTFAVMYLLDYSLDNLSMMALILSIGFVVDDA 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VI 794
           +V+ + +   ++             K  NE     V  +++     +P+   GG    + 
Sbjct: 408 IVMLENI---VRHIEMGEQPLLASLKGSNEIGFTIVSMTLSLAAVFIPVLFLGGVLGRLF 464

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPI 819
             FA+ +   I+++   S+ +   +
Sbjct: 465 KEFAVTITVAILISGVVSVTLTPML 489



 Score = 40.8 bits (93), Expect = 0.96,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 71/182 (39%), Gaps = 19/182 (10%)

Query: 669  GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            G + V++    M++YI +      +   +  ++ L       L    +F I+ ++ A   
Sbjct: 860  GNLWVLLVIAIMVVYIVLGILYESYIHPITILSGLPSAGFGALLTLVIFHIDLSIYAFVG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ LIG    + ++  D   +       ++S    I +         + T+MAA +  +P
Sbjct: 920  LIMLIGIVKKNAIMQIDFALE--AEREHNLSAEQAIYEGCLIRFRPIMMTTMAALLGAVP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI-----------YDWRAKNA 831
            +A+    GG       + +  G++ +   ++++     +++              + KN 
Sbjct: 978  IALGYGAGGEARQPLGLVVVGGLLFSQLVTLYLTPVFYIYMSALQDRVQSWRGQGKKKNK 1037

Query: 832  RI 833
            ++
Sbjct: 1038 KL 1039


>gi|319406730|emb|CBI80364.1| AcrB/AcrD/AcrF multidrug efflux protein [Bartonella sp. 1-1C]
          Length = 1044

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 65/516 (12%), Positives = 145/516 (28%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++ +MI   G   A  N      +   P                    +    
Sbjct: 25  RRPVFTFVVNAMIIIAG-FSAWMNV----DVRELPDVDTPVTT---------IMTIFSGA 70

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  + +        +    ++++ ++F         A  +   +  
Sbjct: 71  SAETIDREITKVIEDAVARVSGVKTISSTSSFGRSRVQINFNVGVDLNVAASDIRDAISR 130

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    L++       S++        +     + +  +  Q ID +   +   
Sbjct: 131 ITYSLPKDADSPLIIKADSNAASMMYLVVTSPTMNID--DLTTIVNDQIIDTLSAVDGVG 188

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D  +L     T   +S                            
Sbjct: 189 DVQVDSARTKIFQIDVDQVKLASYGLTMGDISRVLADMTTDAPVGSLRNSIQTLIIRATA 248

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +        + L                                   +     V     
Sbjct: 249 RLTTPEAFEQVILKSH------------------------VRLGDVARVTLSPDVETVIL 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            KAQ +     +    +   L+A   P     +   +      +   
Sbjct: 285 RVNGKTGIGIGIVRKAQSNTLNISKGVRAVLEQLKAVLPPSVHMSILSDDAIFIQSALHE 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI    V++V+F+ +   +  L+   SI + +I T+A + L G +L + +  G+V
Sbjct: 345 VEVALAIAILSVILVIFLFLRDIRATLIPILSIPVALIGTIAAIYLAGFSLNILTFLGLV 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G    +  +  + +T +   V + F  
Sbjct: 405 LATGLVVDDAIVVLENIVRRRNMGLGSQSAAVIGTQEVFFAVLATTLTLVAVFVPISFLP 464

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F   + +SIL+S   A+++   +    
Sbjct: 465 GQVGGLFREFGFVLAISILLSSVVALTLCPMLASRF 500



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 93/254 (36%), Gaps = 7/254 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+    V L  V     S  +  +  +        +  ++    +++  ++ +  V ++
Sbjct: 258 QVILKSHVRLGDVARVTLSPDVETVILRVNGKTGIGIGIVRKAQSNTLNISKGVRAVLEQ 317

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTL 700
           +  ++P S   +         +  + +  V + I+ +++++ I          L  I ++
Sbjct: 318 LKAVLPPSVHMSILSDDAIFIQSALHEVEVALAIAILSVILVIFLFLRDIRATLIPILSI 377

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L G   N+     ++   G  V+D +VV + +   ++     +  +  
Sbjct: 378 PVALIGTIAAIYLAGFSLNILTFLGLVLATGLVVDDAIVVLENI---VRRRNMGLGSQSA 434

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
                 E     + T++      +P++   G V      F   +A  I++++  ++ +  
Sbjct: 435 AVIGTQEVFFAVLATTLTLVAVFVPISFLPGQVGGLFREFGFVLAISILLSSVVALTLCP 494

Query: 818 PILLFIYDWRAKNA 831
            +         K++
Sbjct: 495 MLASRFLKQYVKDS 508



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 92/258 (35%), Gaps = 18/258 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                 N+ V LSV+ +  E      +  +           L        A   +  +   
Sbjct: 784  FKTTDNKYVPLSVIANLHEKAIAPQLKREKRMSAVVLSANLALGVSLGNAYQAIENIASP 843

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + E   +  +     +    S  +I  G     I+ + +L+ +  +F+ +      + T
Sbjct: 844  LLVEGNYIIPLGEAATLSETSSSFMIVFG-----IAFVIILLVLAAQFESFISGFIIMAT 898

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTTSIS 756
            + L +   +      G+  N+ +   ++ L+G    + +++    D++R+         S
Sbjct: 899  VPLGLGCAVIAMLFSGVSLNIYSQIGLILLVGVMAKNGILIVEFADQLREQ------GKS 952

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
             R+ ++ + N  L     T + A +  +P+ +    G     +    +  G+ +A   ++
Sbjct: 953  VREAVEDAANIRLRPVCMTMICAILGGIPLVLAKGAGAEARIALGWVIVGGLGLATIFTL 1012

Query: 814  FIAAPILLFIYDWRAKNA 831
            F+   + L +  +    A
Sbjct: 1013 FMTPVVYLLLGRFIQPKA 1030


>gi|212703367|ref|ZP_03311495.1| hypothetical protein DESPIG_01410 [Desulfovibrio piger ATCC 29098]
 gi|212673213|gb|EEB33696.1| hypothetical protein DESPIG_01410 [Desulfovibrio piger ATCC 29098]
          Length = 1096

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 60/520 (11%), Positives = 136/520 (26%), Gaps = 47/520 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +   G++           +   P                   + ++  
Sbjct: 51  RRPVATTLLTIAVTLAGMVA-----FFLLPVAPLPEVDFPV-------------VRVQAS 92

Query: 62  EDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +        +     +        S      ++ L F   R     A  V  
Sbjct: 93  MPGASPETMASTVATPLERALGRIAGVTEMTSSSSLGSTRVILQFDLDRDINGAARDVQA 152

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L   P              I++     D +     +           +I   
Sbjct: 153 AINAARSTLPTMPSNPTYRKVNPSGAPILILSVTSDVLSR--TQLYDAASTVLAQKISQI 210

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +       L  +  +  P  L +   T   +                         
Sbjct: 211 AGVGEVTVGGGALPAVRVDISPDALHRTGLTMEDVREALA-------------------- 250

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G    +      +        A+   +T      +   E             +      +
Sbjct: 251 GANAFLPKGHLENESTSWTVVASDQLRTAAQYRKVIVAERDGIAIRLGDVATVTDSSQDI 310

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               +         I       +   T++    +   LR+         V          
Sbjct: 311 RQMALSNGKPSILLIVFRSPGANIIETVDRVKAMIPQLRSWLPESADLSVRMDRSQTIRA 370

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + +  +   LV++V+F+ +  G+   +   +  +++I T  ++ L G TL   S+
Sbjct: 371 SLHEVEKSLLLSMALVVLVVFLFLRNGRATSIPAVAAPVSLIGTFGVMYLCGYTLDNLSL 430

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + +  G  VD  I+V E I       +    +   G      T+   +++ +   + +
Sbjct: 431 MALTVATGFVVDDAIVVLENIVRRLEMGEKPLRAALRGAREVGFTVISISLSLVAVFIPI 490

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            F G   G   R F++ +  ++L+SM  +++    M   +
Sbjct: 491 LFMGGVVGRLFREFSVVLATAVLVSMVVSLTTTPMMCATL 530



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 53/131 (40%), Gaps = 8/131 (6%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           ++ A+   +  +  T G   L G   +  ++ A+    G+ V+D +VV + +   ++   
Sbjct: 401 SIPAVAAPV-SLIGTFGVMYLCGYTLDNLSLMALTVATGFVVDDAIVVLENI---VRRLE 456

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
                     +   E     +  S++     +P+   GG V      F++ +A  ++V+ 
Sbjct: 457 MGEKPLRAALRGAREVGFTVISISLSLVAVFIPILFMGGVVGRLFREFSVVLATAVLVSM 516

Query: 810 SSSIFIAAPIL 820
             S+    P++
Sbjct: 517 VVSL-TTTPMM 526



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/141 (18%), Positives = 58/141 (41%), Gaps = 6/141 (4%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +       L  ++TL       L      G+EF++ A+  VL L G    + +++ D  
Sbjct: 926  VLYESLIHPLTILSTLPSAGIGALLALRACGMEFSVIALIGVLLLCGIVKKNAIMMID-- 983

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
                   T ++  R+ I ++        + T+ AA +  +P+A+    G  +     I +
Sbjct: 984  FAIDAARTRNLPPREAIHEACRLRFRPIMMTTAAAILGAVPLALGQGDGAEIRQPLGITI 1043

Query: 802  AFGIVVAASSSIFIAAPILLF 822
              G++V+   +++   P++  
Sbjct: 1044 VGGLLVSQLLTLY-TTPVVYL 1063


>gi|166712300|ref|ZP_02243507.1| RND superfamily protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 1170

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 79/607 (13%), Positives = 171/607 (28%), Gaps = 52/607 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 31  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 76

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 77  APAEIETLVTEPVEEAVGVVKNLRKLTSISRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 136

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ +  +L+        I+        +  +    I                ++
Sbjct: 137 L--SLPLETRPPVLLRFNPSTEPIMRLALSPKQAPASDTDAIRQLTGLRRYADEDLKKKL 194

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 195 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPINNVITRLKEENVNISGGRLEEGSQR 254

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 255 YLVRTVNQFVDLDEIRNMLVTTQSSSGSAAEAAMQQMYAIAASTGSQAALAAAAEVQSTS 314

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              S    G           + +          L      +     +   +   T     
Sbjct: 315 SSSSSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKDAVELAIYKEGDANTVSTAAALR 374

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 375 KRLQQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 434

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +  SV 
Sbjct: 435 ISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLSVL 494

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
            +   G       +  S +T +   + L F     G   R  A+T+ ++I IS+  ++++
Sbjct: 495 DAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLMVSMTL 554

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           +  M+  +     M   D     ++      +       R  G  +   F   +  ++  
Sbjct: 555 IP-MLSSLKGAPPMAFPDEPSHPQWQPEQRWLKPVAAGRRGAGASVRYAFFGAAWAVVKV 613

Query: 567 HGLNYGI 573
                G+
Sbjct: 614 WRGLSGV 620



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/210 (14%), Positives = 67/210 (31%), Gaps = 6/210 (2%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 +  +           + + +++    +     I   E     I   +       
Sbjct: 352 DAVELAIYKEGDANTVSTAAALRKRLQQLKATVPGDVEITTIEDQSHFIEHAISDVKKDA 411

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           VI   +A+LI        +       +L + I  T  F    G+  N+ ++  +    G 
Sbjct: 412 VIGGVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGL 471

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            V+D +VV + +    K     +S  D       E     + +++      LP+      
Sbjct: 472 VVDDSIVVLESI---AKARERGLSVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGI 528

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            G +    A+ +A  I ++   S+ +   +
Sbjct: 529 AGQLFRDQALTVAIAIAISLMVSMTLIPML 558



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/213 (11%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       Q    ++  +  +     D      V E+      + +      +  
Sbjct: 911  AAVAEVLATTGPSQIHRADQTRVAIVSASLKDIDLGGAVREVETMVRKDPLAAGVGMHIG 970

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 971  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 1029

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+G    + +++ D++    +L    +  R+ + +     L   + 
Sbjct: 1030 GKPISVVVFIGLILLVGLVTKNAIILIDKVN---QLREDGMPKREALIEGARSRLRPIIM 1086

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            T++      LP+AV    G  V    AI +  G
Sbjct: 1087 TTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1119


>gi|187919451|ref|YP_001888482.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
 gi|187717889|gb|ACD19112.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
          Length = 1041

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 68/550 (12%), Positives = 154/550 (28%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +  +GL+      +       +P+                         
Sbjct: 10  RPVATSLLMVALVLVGLVAVRFLPVSSLPDVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +      V    +  + ITL F  S   +     V   +   
Sbjct: 56  PNVMATTVTAPLEVQLGEIPGLQQMVSYSSEGASVITLQFDLSLNLDIAEQNVQQAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NS L                   +L+   +        +       +   +I        
Sbjct: 116 NSFLPAGLPAPPTYAKVNPADQPILT-LAVTSKSMSLTQLQDTANNRLATKISEVPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +   +  +  E DP +L         +       N S+    F    L  +      
Sbjct: 175 VTTAGGNVPAVRVEADPQKLAAYGLNLDDLRTLLANVNVSQPKGNFDGPELDYTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D  +     +                            +      + +    V  G  
Sbjct: 235 IVDPQDYLATVIA--------------------YQNGAPVYLRDVARVSQAAQDVERGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T+         L +         V     G    S S  
Sbjct: 275 YNRTPAIVLNVQRQPGANVIATVNQIMKQLPALESTLPAGLQVTVVANTTGVIRSSVSDA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   LV++V+F+ +      ++   S+ +++I  LA++  L  ++   S+  +++
Sbjct: 335 AFELVLAVVLVVLVIFVFLRNVPATIIPSISVPVSLIGALAVMYQLNYSIDNLSLMALII 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD +I++ E I     + ++   +   G  +   TI    ++ +   + L F GG
Sbjct: 395 ATGFVVDDSIVMIENIVRYLEEGKTPLEAALEGAGQIGFTILSLTVSLIAVLIPLLFMGG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              R    FAIT+ ++I+IS   ++++V  +   ++R +  +           L    +A
Sbjct: 455 VIGRLFSEFAITLAVTIVISAVVSLTVVPMLCARLLRAQAQRHPSRFERISEGLFDKTLA 514

Query: 540 IQFMRARFWG 549
                  +  
Sbjct: 515 AYERGLVWVL 524



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +    ++ + +   L          +  ++ A++   G+ V+D +V+ + +   ++    
Sbjct: 360 IIPSISVPVSLIGALAVMYQLNYSIDNLSLMALIIATGFVVDDSIVMIENI---VRYLEE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAAS 810
             +  +   +   +     +  +++    ++P+   GG +      FAI +A  IV++A 
Sbjct: 417 GKTPLEAALEGAGQIGFTILSLTVSLIAVLIPLLFMGGVIGRLFSEFAITLAVTIVISAV 476

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            S+ +   +   +   +A+ 
Sbjct: 477 VSLTVVPMLCARLLRAQAQR 496



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 82/217 (37%), Gaps = 6/217 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + +      + +  +  ++     +    +I  +     +   + +   +  +I + +
Sbjct: 809  VTISFNLAQDASLSAAVAQIRDAEKAVALPPSITTSFQGAAQAFEDSLSSEVYLLIAALV 868

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            A+ I + + ++ +   +  ++TL       L    + G + ++  +  ++ LIG    + 
Sbjct: 869  AVYIVLGVLYESYIHPVTILSTLPSAGIGALLALMIAGSDLDVIGIIGIVLLIGIVKKNA 928

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +           R+ I ++        + T++AA +  LPM +    G  + 
Sbjct: 929  IMMVDFALE--AERVHGKPPREAIFEASLLRFRPILMTTLAAMLGALPMLLGTGTGSELR 986

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                + +  G+ ++   ++F    I LF      +  
Sbjct: 987  RPLGLAIIGGLTLSQVLTLFTTPVIYLFFDRLAQRVK 1023


>gi|15597722|ref|NP_251216.1| Resistance-Nodulation-Cell Division (RND) efflux transporter
           [Pseudomonas aeruginosa PAO1]
 gi|116050470|ref|YP_790711.1| putative efflux transporter [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254240957|ref|ZP_04934279.1| hypothetical protein PA2G_01637 [Pseudomonas aeruginosa 2192]
 gi|296389051|ref|ZP_06878526.1| putative efflux transporter [Pseudomonas aeruginosa PAb1]
 gi|313107424|ref|ZP_07793614.1| putative efflux transporter [Pseudomonas aeruginosa 39016]
 gi|9948582|gb|AAG05914.1|AE004680_2 probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa PAO1]
 gi|115585691|gb|ABJ11706.1| putative efflux transporter [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126194335|gb|EAZ58398.1| hypothetical protein PA2G_01637 [Pseudomonas aeruginosa 2192]
 gi|310880116|gb|EFQ38710.1| putative efflux transporter [Pseudomonas aeruginosa 39016]
          Length = 1036

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/555 (11%), Positives = 159/555 (28%), Gaps = 32/555 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FGLLPVAPLPNVDFPAIV---------VSASLPGASPETMASSVATPLERSLGRIAGISE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S       + L F   +  +  A +V   + G  S L      N            +
Sbjct: 80  MTSSSSLGSTTVVLVFDLEKDIDGAAREVQAAINGAMSLLPSGMPNNPSYRKANPSDMPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    +        E           ++   +   Q       L  +  + +P  + Q  
Sbjct: 140 MV-LTLTSETQSRGEMYDLASTVLAPKLSQVQGVGQVSIGGSSLPAVRVDLNPDAMSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N++                    +    E                  
Sbjct: 199 LSLDSVRTAIAAANSNGPKGAVEKDDKHWQVDANDQLRKAREYE---------------- 242

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
              + I ++              +   +  V +            I + +   +     +
Sbjct: 243 --PLVIHYNADNGAAVRLGDVAKVSDSVEDVRNAGFSDDLPAVLLIVTRQPGANIIEATD 300

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                  +L+    P     V +    +   S    + T  I   LV++V+F+ +  G+ 
Sbjct: 301 AIHAQLPVLQELLGPQVKLNVMDDRSPSIRASLEEAELTLLISVALVILVVFLFLRNGRA 360

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ +++I T A++ L   +L   S+  +++  G  VD  I+V E I     +  
Sbjct: 361 TLIPSLAVPVSLIGTFAVMYLCDFSLNNLSLMALIIATGFVVDDAIVVVENIARRIEEGD 420

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
               +   G  +   T+    ++ +   + L   G   G   R FA+T+  +IL+S+  +
Sbjct: 421 PPIQAAITGARQVGFTVLSMTLSLVAVFIPLLLMGGLTGRLFREFAVTLSAAILVSLVVS 480

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +++   +   +      +    +   R         +++  +  W +  S L  +  +  
Sbjct: 481 LTLTPMLCARL-LRPLKRPEGASLARRSDRFFAAFMLRYRASLGWALEHSRLMVVIMLAC 539

Query: 564 LFTHGLNYGIDFKGG 578
           +  +   + +  KG 
Sbjct: 540 IAMNLWLFVVVPKGF 554



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 68/205 (33%), Gaps = 6/205 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +V  Q       A   +   +      + P   +   +   P I   L    +  +I  A
Sbjct: 286 IVTRQPGANIIEATDAIHAQLPVLQELLGPQVKLNVMDDRSPSIRASLEEAELTLLISVA 345

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L     N  ++ A++   G+ V+D 
Sbjct: 346 LVILVVFLFLRNGRATLIPSLAVPVSLIGTFAVMYLCDFSLNNLSLMALIIATGFVVDDA 405

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +                 +     +  +++     +P+ + GG      
Sbjct: 406 IVVVENI---ARRIEEGDPPIQAAITGARQVGFTVLSMTLSLVAVFIPLLLMGGLTGRLF 462

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPI 819
             FA+ ++  I+V+   S+ +   +
Sbjct: 463 REFAVTLSAAILVSLVVSLTLTPML 487


>gi|327441253|dbj|BAK17618.1| cation/multidrug efflux pump [Solibacillus silvestris StLB046]
          Length = 1015

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 87/647 (13%), Positives = 192/647 (29%), Gaps = 49/647 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + ++    +  +G +        +  +   P   P           G         
Sbjct: 9   KRPVFTIVSMIFVLILGAVSLF-----KIPVTLIPDLNPPI---------GVVVTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               VN  +    +   + L        +  +  N I L F  S   +++   +   +  
Sbjct: 55  SPIEVNEKVTKPLEASLATLPGIKRVQSTSLESSNLIILEFDWSTSMDDVQTDILQRIDL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D  K   +     +  ++      +       + +         ++  +E   
Sbjct: 115 V--PLPEDAGKPSFLKFDPSQFPVIQMALAAENEEVDIRQIA----ESLEQELQRTEGVA 168

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  I+ ++  E D  +L Q   T   +       N S  G        +       
Sbjct: 169 SVTVSGEIVEEVQIELDARKLEQNNLTQNDVMQIIQASNISMPGAELSTNENQLLTTRVV 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                 F        V +S + +            + +         
Sbjct: 229 SL-----------------FTSPEEIANVALSVNPLTGEAIKVKDIATVERKEQETNTIT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIET-AGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                         ++  +     ET    L  +L           +          +  
Sbjct: 272 RANNQQAVLISVLQESGANTANVSETFQKELGQLLDEPQYDGVEATILFDQGDYVRLAIG 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +        ++VLF+ +   K  L+   +I  +VI+T  L+     +L + ++  +
Sbjct: 332 NISSSLIFGGLFAMLVLFVFLSGIKSPLIIGIAIPYSVIVTFVLMFFADFSLNIMTLGAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            LGIG+ VD+ I+V E I       ++   +   G       I  S +T +   V + F 
Sbjct: 392 ALGIGMLVDNAIVVIENIERHLELGENPKEAAANGTKEVALAITASTVTTIAVFVPVIFI 451

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G   +    FA+T+  S++ S+F A+++V  +    +R K    +     S  +     
Sbjct: 452 SGLIGQIFVEFALTISFSLIASLFVALTVVPMLASRFLRTKPSNVVKKRQDSWLYRNYTK 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLS---- 592
           I    +  R   + I+I+    S  +++  G  +     +G + L V       +     
Sbjct: 512 ILKWGLSRRALILSITIVLVGISGFMVYKTGTEFLPPTDEGFVSLSVELPNSATVEKTEQ 571

Query: 593 ---VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
               +    +  +  D+      G +  L R   +  +     +++E
Sbjct: 572 IVSEIEEMAKQYEEVDVVVSLIGGNQQSLSRGTSEQNEGEISVKLVE 618



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 75/246 (30%), Gaps = 15/246 (6%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V+      +    +           V +            V E  +K++ +++       
Sbjct: 254 VKDIATVERKEQETNTITRANNQQAVLISVLQESGANTANVSETFQKELGQLLDEPQYDG 313

Query: 654 TEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            E        + +R  I       +     AML+           L     +   +  T 
Sbjct: 314 VEATILFDQGDYVRLAIGNISSSLIFGGLFAMLVLFVFLSGIKSPLIIGIAIPYSVIVTF 373

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                     N+  + A+   IG  V++ +VV + +    +      + ++       E 
Sbjct: 374 VLMFFADFSLNIMTLGALALGIGMLVDNAIVVIENI---ERHLELGENPKEAAANGTKEV 430

Query: 769 LGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +++      +  + + G  G +   FA+ ++F ++     S+F+A  ++  +  
Sbjct: 431 ALAITASTVTTIAVFVPVIFISGLIGQIFVEFALTISFSLIA----SLFVALTVVPMLAS 486

Query: 826 WRAKNA 831
              +  
Sbjct: 487 RFLRTK 492



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 104/255 (40%), Gaps = 14/255 (5%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +       + V    L S++I +        ++   V +  +   S + + + + V   
Sbjct: 767  TMKLRTNAGVFVELQQLASVEIKETQTAIRRSDQASAVAVFVKYNTSESLSGISKKVDNA 826

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
            I E    +T +       ++     +  I+ ++++ I + + +  +F+ +      + ++
Sbjct: 827  IEEEGIPATSKVVFGGDRELFDSAKQDMILAILLAVILIYLVMGAQFESFKLPFVMMFSV 886

Query: 701  ILDITKTLGFFALFGIEFNLTAVAA---VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             L +   +G      +   L  V A   +L L+G  VN+ +V+ D +    +     ++ 
Sbjct: 887  PLTV---IGVAVSLFVTNTLLGVTAIIGILILVGIVVNNGIVLIDYIN---QKRQIGLNI 940

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
             + I     + +   + T++   + ++P+A+    G  +    AI +  G+V +   ++F
Sbjct: 941  TEAIITGAQDRMRPILMTALTTILGLVPLALGIGEGTEMNQPMAIVVIGGLVSSTVLTLF 1000

Query: 815  IAAPILLFIYDWRAK 829
            I  PI+  + +  AK
Sbjct: 1001 IV-PIIYSLIEKEAK 1014


>gi|289627909|ref|ZP_06460863.1| RND efflux transporter [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647321|ref|ZP_06478664.1| RND efflux transporter [Pseudomonas syringae pv. aesculi str. 2250]
 gi|330867884|gb|EGH02593.1| RND efflux transporter [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 1034

 Score =  144 bits (363), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 69/500 (13%), Positives = 142/500 (28%), Gaps = 37/500 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
            P+  +   P A                 +   L     + +   +    +   S +   
Sbjct: 33  FPRLPIAPLPEAEFPT-----------IQVTAQLPGASPETMASSVATPLEVQFSAIPGM 81

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                S       +TL F  ++  +  A +V   +     +L  D              S
Sbjct: 82  TQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADLPSLPTWRKVNPADS 141

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            VL  +    +I    E S         Q+   E   Q   + +    +  +  P +L  
Sbjct: 142 PVLILSVSSSLIPG-TELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKLAA 200

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L  T A +                              +          ++  ++N    
Sbjct: 201 LGLTLADIRLAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQLF 240

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    +                 +                         +   +   T
Sbjct: 241 KPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDT 300

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+   L      V          S    + T  I   LV+ V+ + +   
Sbjct: 301 VDRIQRELPRLQEMLLASVDVSVLNDRTRTIRASLHEVELTLLIAVLLVVAVMALFLRQL 360

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
              L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I      
Sbjct: 361 SATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHLEA 420

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            Q +  +   G      T+   + + + A + L F G   G   + FA+T   +ILIS+ 
Sbjct: 421 GQGMREAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVV 480

Query: 502 TAISIVRAMMIFIIRYKKMK 521
            ++++   +    +R     
Sbjct: 481 VSLTLAPTLAALFMRAPTHN 500



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 90/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLLASVDVSVLNDRTRTIRASLHEVELTLLIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGSGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATATILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 79/202 (39%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   ++I  +     +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVSMLDQAKKEIGMPASIIGSFQGAAQAFQSSLANQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    + G +F++ A+  ++ LIG    + +++ D         
Sbjct: 882  HPLTIISTLPSAGIGALLLLWMMGQDFSIMALIGIVLLIGIVKKNGILLVD--FALQAQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               +S ++ I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 940  EQGLSPQEAIYEACITRFRPIIMTTLAALLGALPLMLGFGVGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++F    I L +     K 
Sbjct: 1000 QMLTLFTTPVIYLQLERLFHKR 1021


>gi|188587418|ref|YP_001918963.1| acriflavin resistance protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179352105|gb|ACB86375.1| acriflavin resistance protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 1041

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 71/616 (11%), Positives = 177/616 (28%), Gaps = 45/616 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++   +  +G LI      P+  L+  P       +                 
Sbjct: 9   KRPIATIMVLLAVLILGFLI-----YPRLPLNLLPQMNYPMAV---------VVTQYPEA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E+               +  + + + F+     +  + ++   +  
Sbjct: 55  GPQEIENMITRPMEEMVGTTAGIENISSRSYEELSMVMVEFSWGTDMDFASLEMRERIDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQIGISE 178
           V   L    +   +V      + ++     +++        I+    +  Q ++++   +
Sbjct: 115 VRENLPEGAESPQVVKVDPSLMPVMFVSVGLEEAEGEHRDLIDLEHLVSNQVVNRLKRID 174

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL----- 233
                  S     ++  + +  ++ +    + ++       N +  G             
Sbjct: 175 GVSSVELSGVGEREIRVDLNEDQMEKYDLNSQEVYGILSGQNINVPGGRIVEEEQELLVR 234

Query: 234 --------------------RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
                                D  G      +    SG  L                   
Sbjct: 235 SVSEFSSLDELEETTVGINTPDFPGETSNGLNDSFSSGDELPADQNPEVSTEFSTDRRQG 294

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
            +  G         D          +  V         +   K   +    +        
Sbjct: 295 EEFSGDYGEPVYLDDIADIRDEYQRESLVRLNGDKALGLIIQKQSDANTVQVTRNINEEL 354

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
               G       +             S+ +    +   L  +VLF+ +   K  L+   S
Sbjct: 355 AKIQGEYQELNLVPTWNQGNFIEEVLSMVQQNAVLGGFLAALVLFVFLRNYKSTLIVAIS 414

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           I  +++ T  L    G +L + +++G+ LGIG+ VD++++V E I     + + +  +  
Sbjct: 415 IPASILATFPLAYFTGLSLNIMTLSGLALGIGMLVDNSVVVLENIFRHVEQGKQIKEAAI 474

Query: 454 MGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
            G     S I  S +T +   + +F      G      +  +  S+ +S+FTA++++  +
Sbjct: 475 TGTEEVSSPIIASTLTTIAVFLPVFLLEDLAGIIFADLSYMVVFSLAMSLFTALTVIPVL 534

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
            + +I + +  S  I   +        +     + ++   G  IL  I    L    G  
Sbjct: 535 SVLLIGHNQAISKFIPIENLKKRYKKSLHYLSKKGKYVLGGAIILMVISFTLLPNLGGEF 594

Query: 571 YGIDFKGGIQLGVLAN 586
                +    + V   
Sbjct: 595 LPPITRSEFTVDVRLP 610



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/243 (11%), Positives = 80/243 (32%), Gaps = 6/243 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              +++      +   +    +   L+  +    ++V  TR +     KI        + 
Sbjct: 308 DDIADIRDEYQRESLVRLNGDKALGLIIQKQSDANTVQVTRNINEELAKIQGEYQELNLV 367

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            T   G  I   L       V+   +A L+       +   L    ++   I  T     
Sbjct: 368 PTWNQGNFIEEVLSMVQQNAVLGGFLAALVLFVFLRNYKSTLIVAISIPASILATFPLAY 427

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G+  N+  ++ +   IG  V++ VVV + +    +        ++       E     
Sbjct: 428 FTGLSLNIMTLSGLALGIGMLVDNSVVVLENI---FRHVEQGKQIKEAAITGTEEVSSPI 484

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +    +  + F + ++  +++ +   + + +      
Sbjct: 485 IASTLTTIAVFLPVFLLEDLAGIIFADLSYMVVFSLAMSLFTALTVIPVLSVLLIGHNQA 544

Query: 830 NAR 832
            ++
Sbjct: 545 ISK 547



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 91/259 (35%), Gaps = 23/259 (8%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            G   +G      +  +  D++ V        I     Q +            +   +  Q
Sbjct: 798  GYFSEGPESTEEIKEKYQDIATVEKEPGPTVINRQDGQRYVTISADSETRDVRGAVNSIQ 857

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
             R+  +   +   +      ++      ++   L    ++        + + +  +F+  
Sbjct: 858  DRLDNVDIPQGYRLNYGGAYEDMWSSYLELGGALALSLLL--------VFMVMAGQFESL 909

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             + L  + ++       +    +     N+ ++  V+ L G  VN+ +V+ D +++    
Sbjct: 910  RYPLVIMVSIPFSFVGVILALYILNDTLNVASIMGVIILSGLVVNNAIVLVDCIKRE--- 966

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                    D + +  +  L   + T++   ++++PMA+    G  +  S A  +  G+  
Sbjct: 967  --------DSVLEGASLRLRPILMTTITTLLALIPMAIAVGPGSEIQNSLAFSLIGGLFS 1018

Query: 808  AASSSIFIAAPILLFIYDW 826
            A   ++ I   ++++I   
Sbjct: 1019 ATLLTLVILPLVIIWIKSR 1037


>gi|27367157|ref|NP_762684.1| protein-export membrane protein SecF [Vibrio vulnificus CMCP6]
 gi|27358725|gb|AAO07674.1| protein-export membrane protein SecF [Vibrio vulnificus CMCP6]
          Length = 285

 Score =  144 bits (362), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 64/258 (24%), Positives = 133/258 (51%), Gaps = 6/258 (2%)

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +       R+    IS+   + S+  L   GLN G+DF GG+   V  +  +    +  
Sbjct: 4   FMKKHIRAIRYLTSVISLALMVVSLVALGLRGLNLGLDFTGGMVTEVKLDAGLTNHQLLD 63

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L+ +     +      E  +++R     G++ A       +++ +  +    T  +  +
Sbjct: 64  QLKPVLGESTTVTKSGEEGRWIIRYSLPEGETQAPN-----IQQVLDGVSHHVTTISNSV 118

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           VG ++ ++L+ +G + ++IS + +L Y+  RF+W  A G++  L+ D+   LGFFA+  +
Sbjct: 119 VGSQVGQDLVDQGGMALLISILCILGYLCFRFEWRLASGSLLALLHDVVLVLGFFAITQM 178

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           EFNLT  AA+L ++GYS+ND +++ DR+R+ + +   + +  ++ D+++  T  R++ TS
Sbjct: 179 EFNLTVFAAILAILGYSLNDSIIIADRIRE-LLIAKQNETTENINDQAVLGTFSRTMVTS 237

Query: 777 MAAFISVLPMAVWGGSVI 794
               I++  +   GG+ +
Sbjct: 238 GTTLITIAALWFMGGNAL 255


>gi|269792992|ref|YP_003317896.1| acriflavin resistance protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269100627|gb|ACZ19614.1| acriflavin resistance protein [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 1022

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 66/686 (9%), Positives = 175/686 (25%), Gaps = 48/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + +L   +   GL+      L    L   P                     +   
Sbjct: 9   RRPVTVTMLTGAMVLFGLMA-----LSAMGLQLIPDIDLPVVT---------VSTSMTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               ++  +    ++  S L        S  Q  +   L F      +  A  V   +  
Sbjct: 55  SAKVMDNDVADVIEDKLSTLSGVESMSSSSYQGVSITVLEFQLGVDVDRAAADVRDKVNL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +    ++   +  + +I+                +    +    +I   E   
Sbjct: 115 AARSLPSEADTPVVQKFSIGDRAIITLALVGGS---DPKGLATFADKVLKPRIQAIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++    DP +L         +       +                     
Sbjct: 172 EVGTPGLRTREIRVWLDPVKLEARNLMVKDVIDAFKAKHVELPAGSVKNSRQEIQLRLIG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   ++S                     +     G           +   L       
Sbjct: 232 EYQTVEDLS--------------------SMPIKVEGNAMVRLRDVARVEDGLEDKGSAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +             +   +              +R  +      +V        + S   
Sbjct: 272 LYNGSDTIFITVKKQRGANEVAVCRRVREAVQEMRRQAPAGVNIMVIGDQSDYIMRSIRG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L  +V+F+     +   +   SI +++I +  ++  LG ++   ++ GI 
Sbjct: 332 VFSNVFQAVLLCALVMFLFFKTLRSTFITVISIPVSLIGSFLVMRALGLSINNLTMMGIS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD+  +V E +  +         +   G      ++     T +     + F G
Sbjct: 392 LAVGMVVDATTVVLENVHRQVEGGLKPLEASIKGTQEVAFSVVAGAATTMAVFAPIAFMG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLSRFFL 533
              G     F IT+ +++ +S+  ++++   +    +++     +  ++ D         
Sbjct: 452 GIVGRFFYHFGITVVVTVGLSLLVSLTLTPFLCSLALKHEPEPGRLGRAFDRFFARLEAG 511

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS- 592
               +       +   +    LF +            +    +G   + V       L  
Sbjct: 512 YRRSLFWAVGHRKAVVLAAFGLFVLGLGLAANIGKGFFPTSDRGSFSVDVELPPGSSLER 571

Query: 593 --VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                + L+     +   +   G+    +  +   G    +   ++        I  +  
Sbjct: 572 TQEFIAKLDHRIRRNQYVKYTYGDAGSGIGGEANKGSISVELVPIKERPPIDQVIDQVRK 631

Query: 651 IQNTEIVGPKISRELIRKGIVGVIIS 676
             ++   G     +  R G+  +++ 
Sbjct: 632 DLSSFREGKLTFSQEGRSGVTMMLVG 657



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 71/172 (41%), Gaps = 7/172 (4%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
             ++    + I+   + + + I+F+ +   L  + +L L      G   L G E ++ +  
Sbjct: 838  FKRLFTALAIAIALVYVVMAIQFESFLHPLTVMFSLPLLTPGAFGLLFLMGNELDMMSFI 897

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ L+G  VN+ +++ D + +              +  +    L   + T+++  +  +
Sbjct: 898  GIILLVGIVVNNGIILVDFINQER---EKGAPKTAAVLTAGPLRLRPILITAVSTMVGAI 954

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            P A+    G     S A+ +  G+  +   ++F+   + L + D + +   +
Sbjct: 955  PTALKLSEGADFRQSMAVAVVGGLSTSTLLTLFVVPTVYLILDDMKDRARAL 1006



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 83/270 (30%), Gaps = 7/270 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I   +A+   +    + +      L   G    ++    + + V  N  V L  V    +
Sbjct: 203 IDAFKAKHVELPAGSVKNSRQEIQLRLIGEYQTVEDLSSMPIKVEGNAMVRLRDVARVED 262

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            L+    +      +  F+   + +  + VA  R +    +++    P            
Sbjct: 263 GLEDKGSAALYNGSDTIFITVKKQRGANEVAVCRRVREAVQEMRRQAPAGVNIMVIGDQS 322

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF 718
                 IR     V  + +   + +++ FK        + ++ + +  +       G+  
Sbjct: 323 DYIMRSIRGVFSNVFQAVLLCALVMFLFFKTLRSTFITVISIPVSLIGSFLVMRALGLSI 382

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           N   +  +   +G  V+   VV + +    +     +   +   K   E     V  +  
Sbjct: 383 NNLTMMGISLAVGMVVDATTVVLENVH---RQVEGGLKPLEASIKGTQEVAFSVVAGAAT 439

Query: 779 AFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                 P+A  GG V      F I +   +
Sbjct: 440 TMAVFAPIAFMGGIVGRFFYHFGITVVVTV 469


>gi|296106308|ref|YP_003618008.1| hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1
           family [Legionella pneumophila 2300/99 Alcoy]
 gi|295648209|gb|ADG24056.1| hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1
           family [Legionella pneumophila 2300/99 Alcoy]
          Length = 1015

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 69/517 (13%), Positives = 164/517 (31%), Gaps = 41/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN-RISLGLDLRGGSHLVLEV 60
           +     +++  +I   G+     N + +  + ++P        I  G             
Sbjct: 9   KRPVLSIVVSMLIFLFGI-----NSIYKMQIRQYPKMENTVITIMTG----------YPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            + + + GF+    +   +  +       S +Q  + ITL+   +   +     V   +Q
Sbjct: 54  ADAELIAGFITTPLESAVASAEGIDYMTSSSQQGLSTITLNIKLNFDPQVAFTDVMSKVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L  + ++ +++  ++   +++    +   +     + +    R    Q+   +  
Sbjct: 114 QTLNQLPKESQQPVILKKSDSSTALMYISLDSKDMTPQ--QITDYATRVVQPQLQTVDGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP ++  L  T A +S      N           ++  +   +
Sbjct: 172 AKADILGGQTYSMRIFMDPIKMAALNVTPADVSSVLASNNFLTAAGSTKSEYVAINVTAK 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + +  E                       +                 +          
Sbjct: 232 TDLNNVGEFE--------------------RLIVKSDKGSIIRLRDIAKVELGSQNYDSS 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
               +        +     +    I  A  L   +     P     +          S  
Sbjct: 272 VTFNSKKAVFISITPTPTANPLTVINDARKLFPSIVREFPPSLTGTIVYDATAFIRASIH 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A +V+IV+F+ +   +  L+   +I L+++    L+ +LG ++ L ++   
Sbjct: 332 EVMETIIEAAVIVIIVIFLFLGSVRSVLIPVVTIPLSLVGVCTLMLILGYSINLLTLLAF 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     + ++ F S  +G     + +    IT       + F 
Sbjct: 392 VLAIGLVVDDAIVVVENVHRHLEEGKTPFESAIIGAREIATPVIAMTITLAAVYAPIGFM 451

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               G   + FA T+  +++IS   A+++   M   I
Sbjct: 452 SGLTGALFKEFAFTLASAVIISGIIALTLSPMMCSKI 488



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 84/243 (34%), Gaps = 11/243 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V LS V +  E  Q    +             +            + +  ++ + +  
Sbjct: 767  TMVPLSTVITPTEKTQPNAATHFQQLNSATIQAVMMPGKTLGQGLEFLQKAAQEVLPKGF 826

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                   +     + S  +        + + I + + +  +++ +   L  + ++ + I 
Sbjct: 827  TYDYGGQSRQFMQEGSALIF-----AFLFAIIVIFLVLAAQYESFRDPLIVLISVPMSIC 881

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L    L     N+     ++TLIG      +++ D    N      ++  R  ++++ 
Sbjct: 882  GALIPLNLGAATINIYTQVGLITLIGLISKHGILIVD--FANHLQREKNLDKRAAVEEAA 939

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T+ A    V+P+ +    G +      + ++ G+++    ++F+   +  +
Sbjct: 940  GIRLRPILMTTAAMVFGVIPLLIASGAGAASRFDIGLVISTGLLIGTCFTLFVVPTLYTY 999

Query: 823  IYD 825
            + +
Sbjct: 1000 LAE 1002



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L  + T+ L +        + G   NL  + A +  IG  V+D +VV + +
Sbjct: 350 LFLGSVRSVLIPVVTIPLSLVGVCTLMLILGYSINLLTLLAFVLAIGLVVDDAIVVVENV 409

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +       E     +  ++       P+       G++   FA  +
Sbjct: 410 H---RHLEEGKTPFESAIIGAREIATPVIAMTITLAAVYAPIGFMSGLTGALFKEFAFTL 466

Query: 802 AFGIVVAASSSIFIAA 817
           A  ++++   ++ ++ 
Sbjct: 467 ASAVIISGIIALTLSP 482


>gi|52840957|ref|YP_094756.1| multidrug resistance protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54296747|ref|YP_123116.1| hypothetical protein lpp0786 [Legionella pneumophila str. Paris]
 gi|52628068|gb|AAU26809.1| multidrug resistance protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53750532|emb|CAH11934.1| hypothetical protein lpp0786 [Legionella pneumophila str. Paris]
          Length = 1015

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 69/517 (13%), Positives = 165/517 (31%), Gaps = 41/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKN-RISLGLDLRGGSHLVLEV 60
           +     +++  +I   G+     N + +  + ++P        I  G             
Sbjct: 9   KRPVLSIVVSMLIFLFGI-----NSIYKMQIRQYPKMENTVITIMTG----------YPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            + + + GF+    +   +  +       S +Q  + ITL+   +   +     V   +Q
Sbjct: 54  ADAELIAGFITTPLESAVASAEGIDYMTSSSQQGLSTITLNIKLNFDPQIAFTDVMSKVQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L  + ++ +++  ++   +++    +   +     + +    R    Q+   +  
Sbjct: 114 QTLNQLPKESQQPVILKKSDSSTALMYISLDSKDMTPQ--QITDYATRVVQPQLQTVDGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    +P ++  L  T A +S      N           ++       
Sbjct: 172 AKADILGGQTYSMRIFMNPIKMAALNVTPADVSAVLASNNFLTAAGSTKSEYVA------ 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V  K +++ +                   +                 +          
Sbjct: 226 INVTAKTDLNNVEEFE--------------RLIVKSDKGSIIRLRDIAKVELGSQNYDSS 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
               +        +     +    I  A  L   +     P     +          S  
Sbjct: 272 VTFNSKKAVFISITPTPTANPLTVINDARKLFPSIVREFPPSLTGTIVYDATAFIRASIH 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A +V+IV+F+ +   +  L+   +I L+++    L+ +LG ++ L ++   
Sbjct: 332 EVMETIIEAAVIVIIVIFLFLGSVRSVLIPVVTIPLSLVGVCTLMLILGYSINLLTLLAF 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     + ++ F S  +G     + +    IT       + F 
Sbjct: 392 VLAIGLVVDDAIVVVENVHRHLEEGKTPFESAIIGAREIATPVIAMTITLAAVYAPIGFM 451

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               G   + FA T+  +++IS   A+++   M   I
Sbjct: 452 SGLTGALFKEFAFTLASAVIISGVIALTLSPMMCSKI 488



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 66/160 (41%), Gaps = 6/160 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I   + + + + + +  +++ +   L  + ++ + I   L    L     N+     ++T
Sbjct: 845  IFAFLFAIVVIFLVLAAQYESFRDPLIVLISVPMSICGALIPLNLGVATINIYTQVGLIT 904

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG      +++ D    N      ++  R  +++S    L   + T+ A    V+P+ +
Sbjct: 905  LIGLISKHGILIVD--FANHLQREKNLDKRAAVEESAGIRLRPILMTTAAMVFGVIPLLI 962

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G +      + ++ G+++    ++F+   +  ++ +
Sbjct: 963  ASGAGAASRFDIGLVISTGLLIGTCFTLFVVPTLYTYLAE 1002



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L  + T+ L +        + G   NL  + A +  IG  V+D +VV + +
Sbjct: 350 LFLGSVRSVLIPVVTIPLSLVGVCTLMLILGYSINLLTLLAFVLAIGLVVDDAIVVVENV 409

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +       E     +  ++       P+       G++   FA  +
Sbjct: 410 H---RHLEEGKTPFESAIIGAREIATPVIAMTITLAAVYAPIGFMSGLTGALFKEFAFTL 466

Query: 802 AFGIVVAASSSIFIAA 817
           A  ++++   ++ ++ 
Sbjct: 467 ASAVIISGVIALTLSP 482


>gi|109898547|ref|YP_661802.1| acriflavin resistance protein [Pseudoalteromonas atlantica T6c]
 gi|109700828|gb|ABG40748.1| acriflavin resistance protein [Pseudoalteromonas atlantica T6c]
          Length = 1156

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 60/512 (11%), Positives = 144/512 (28%), Gaps = 23/512 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    I   G++      L +  ++  P                         
Sbjct: 9   KRPVAVWMFTFAIVLFGMVS-----LSRLPINLLPELSYPTLT---------IRTDYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K       S    Q+ + L F      +  + +V   L  
Sbjct: 55  APGEIEQLVSKPIEETIGVVKGVRKVTSSSTSGQSDVLLEFEWGTDMDMASLEVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L +D +K +L+        ++     I    +        +   +   + ++    
Sbjct: 115 L--ILPLDVEKPVLLRFNPSLDPVMRLGFGIGSTSNT----GKNVDVTQSAALDVTSMKR 168

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
            R  + + + +           ++ G         V    + +  +     ++       
Sbjct: 169 LREYAEQQIKRKLESISGVASIKIGGGLESEIHVLVDQQKASQLAIPMSDIIKRLKEENV 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G             + + + ++       +         I           
Sbjct: 229 NAAGGRVDDGSQAYTVRTLNQFTSIQDMQNVFVARRDNKNIRLGDIAVIQDAYKERNSIT 288

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                   +     +   +     +        L +         +          +   
Sbjct: 289 RFDGLEGVEIAIYKEGDANTVQVAQNVNAELRQLESALPANYKIQLIYDQSVFIANAIDD 348

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K    I   L ++VL++ +      L+   SI +++I T  L+     +L + S+ GI 
Sbjct: 349 VKSAGIIGGVLAMVVLYLFLRNVWPTLIISLSIPVSIIATFNLMYGNNISLNIMSLGGIA 408

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD+ I+V E I    +    V  +   G  +    I  S +T +     L F  
Sbjct: 409 LAIGLLVDNAIVVLENIERHKQTQSDVKQAAAQGTKQVSMAIIASTLTTMAVFFPLVFVK 468

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
              G      A+T+  ++  S+  A++++  +
Sbjct: 469 GIAGQLFADQALTVTFALGASLLVALTVIPML 500



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/194 (11%), Positives = 71/194 (36%), Gaps = 9/194 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 L  ++  +     +  I +  +       ++   GI+G +++   +++Y+++R 
Sbjct: 313 QNVNAELRQLESALPANYKIQLIYDQSVFIANAIDDVKSAGIIGGVLAM--VVLYLFLRN 370

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    ++ + I  T        I  N+ ++  +   IG  V++ +VV + +    
Sbjct: 371 VWP-TLIISLSIPVSIIATFNLMYGNNISLNIMSLGGIALAIGLLVDNAIVVLENI---E 426

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
           +   T    +    +   +     + +++       P+       G +    A+ + F +
Sbjct: 427 RHKQTQSDVKQAAAQGTKQVSMAIIASTLTTMAVFFPLVFVKGIAGQLFADQALTVTFAL 486

Query: 806 VVAASSSIFIAAPI 819
             +   ++ +   +
Sbjct: 487 GASLLVALTVIPML 500



 Score = 38.9 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 31/196 (15%), Positives = 71/196 (36%), Gaps = 7/196 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V +           + +EM  + I ++    ++Q       +  +         + 
Sbjct: 922  GQERVAVISANLAYGDLAQAVEMANQHIKDMNLPYSLQARVAGQSEEMKTSFASLKFALA 981

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGY 732
            ++   + + +  +F+       I   +  +      F LF      ++     ++ L G 
Sbjct: 982  LAVFLVYLVMASQFESLLHPLLILLTV-PLACAGSIFGLFITQTNISVVVFIGLIMLAGI 1040

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             VN+ +V+ DR+    +L T  +     I ++ +  L   + T++   + +LPMA  G  
Sbjct: 1041 VVNNAIVLIDRIN---QLRTEGVIKTQAIIEAAHNRLRPILMTTLTTSLGLLPMA-LGLG 1096

Query: 793  VIGSFAIPMAFGIVVA 808
                  IPMA  ++  
Sbjct: 1097 EGAEMRIPMAVTVIFG 1112


>gi|308050204|ref|YP_003913770.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
 gi|307632394|gb|ADN76696.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
          Length = 1084

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/589 (12%), Positives = 156/589 (26%), Gaps = 51/589 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +    +   G++      +       +P+                   +     
Sbjct: 10  RPITVWMGILTLLLFGMVGFSRLAVTLLPEMNYPTLT--------------IRTLYPGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E    +K       + R   + I L F      +  A      L  +
Sbjct: 56  PVEVEQLVSKPIEEAVGIVKGLRRLSSTSRAGLSDIQLEFEWGTDMDLAALDTREKLDAI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQN-NIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              L +D  K L++        ++           +  I            Q+       
Sbjct: 116 L--LPLDIDKPLILRFNPNLDPVMRLGVQTDASDEASLIALRSWADDDLKRQLEAVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  ++ ++    D  +L QL  +  ++                             
Sbjct: 174 SVRPSGGLVREVQILVDQDKLAQLNLSPDELVQRINAE--------------------NI 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +       G             +   + ++       R+        +    A   D  
Sbjct: 214 NLSAGKLTQGSEELLVRTLNQFDSVDALANVIVYHQQGRQVRLRDVAEVRDGFAERTDIS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      +     +   +            A L A     +   V         G+   
Sbjct: 274 RVDGEDAVELSLYKEGDANAVQVANAVHAKLAEL-AKRPNARTITVLYDQSRFIQGAIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L ++V+++ +   +  L+   SI ++V+ T  L+     +L L S+ GI 
Sbjct: 333 VTSAAVIGAVLAMLVIYLFLRDIRPTLIISLSIPISVVATFNLMYFADISLNLMSLGGIA 392

Query: 422 LGIGLAVDSNILVNERIREENR------KNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           L +GL VD+ I+V E I  + +        Q+   +   G +     I  S +T L   V
Sbjct: 393 LAVGLLVDNAIVVLENIDRQRQLAGNSEAPQARAEAARKGTAEVAGAITASTLTTLAVFV 452

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIF----IIRYKKMKSIDINPL 528
            L F     G      A+T+  +++ S+  A++ +  +         + +      +   
Sbjct: 453 PLLFVEGVAGALFGDQALTVAFALVASLLVALTAIPMLAGRRGFQWPKGETRPKRPLPDS 512

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
                      +           I  L     + L        G  F  
Sbjct: 513 RWGRTRHYATTVFSFPFSVLFRYIPALLFTLGLILGRAIKRLAGALFAP 561



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 82/252 (32%), Gaps = 7/252 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++ ++      +R   E              +    V L           +V   V  K
Sbjct: 244 VIVYHQQGRQVRLRDVAEVRDGFAERTDISRVDGEDAVELSLYKEGDANAVQVANAVHAK 303

Query: 642 ITEIVPLSTIQNTEIVGPK---ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           + E+      +   ++  +   I   +       VI + +AML+           L    
Sbjct: 304 LAELAKRPNARTITVLYDQSRFIQGAIDEVTSAAVIGAVLAMLVIYLFLRDIRPTLIISL 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  T        I  NL ++  +   +G  V++ +VV + + +  +L   S + +
Sbjct: 364 SIPISVVATFNLMYFADISLNLMSLGGIALAVGLLVDNAIVVLENIDRQRQLAGNSEAPQ 423

Query: 759 ---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
              +   K   E  G    +++      +P+    G     F    A  +  A  +S+ +
Sbjct: 424 ARAEAARKGTAEVAGAITASTLTTLAVFVPLLFVEGVAGALFG-DQALTVAFALVASLLV 482

Query: 816 AAPILLFIYDWR 827
           A   +  +   R
Sbjct: 483 ALTAIPMLAGRR 494



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/158 (12%), Positives = 60/158 (37%), Gaps = 4/158 (2%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +          +  ++  ++ + ++   + IQ T     +   +  +   + +++
Sbjct: 861  QQRVAIVSAGLAEGTLSEGVDAAQQLVQQLALPAGIQITFGGQNEEMEQSSQSLKIALLL 920

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + I +  +F+     L  +  + + +  ++    L G   ++     ++ L G  V
Sbjct: 921  AVFLVYIVMASQFESLLHPLLILAAVPMALAGSVLGLWLTGTPLSVLVFIGLIMLCGIVV 980

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            N+ +V+ DR+    +L    +     I+++    L   
Sbjct: 981  NNAIVLVDRIN---QLRGQGLDRIAAIEQAAASRLRPI 1015


>gi|47459107|ref|YP_015969.1| bifunctional preprotein translocase subunit SecD/SecF [Mycoplasma
           mobile 163K]
 gi|47458436|gb|AAT27758.1| secD- and secF-like type II secretion system protein [Mycoplasma
           mobile 163K]
          Length = 858

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 100/856 (11%), Positives = 271/856 (31%), Gaps = 58/856 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + + W   L   I  + +++ +    P            K+ +++  D  GG  ++++V 
Sbjct: 10  KLSNWKRWLIVTITVLLVILTIGLVTP---------FYLKDNLNVNSDFVGGKEVIIQVQ 60

Query: 62  ED----DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +        +      S  + + L  +     ++    N        +            
Sbjct: 61  DPINSQPASDELTNEVSQNIFNRLGGQNDSSVTVTNEGNGFIRIIRSNE----------- 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               ++   N    ++ +     K      +       +++ I  +             +
Sbjct: 110 ---LISQNNNPQSLEDFVNEIHNKISFTFTTTLGTSLFVNNGIFNNAITSGVLPPINSNA 166

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +                       L ++   +  ++   +   N         R    ++
Sbjct: 167 DFNSLIPPFKSNSATFNNNSVTIELTEIGKESWNLATQFISTQNDSNNPNLNQRIAIWAN 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            ++ L E             T  F  K +       F+   A     +          ++
Sbjct: 227 LDKLLKE----------FENTQEFITKANSNPYSFVFENEDANGQSILKTTPFIAKDFLI 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            + ++ +A     +I               A I  +           + +    + ++ G
Sbjct: 277 SNQQITSASSNASSITIEGNFTRFKAAQIAAQINYSTSNNYFFKQISSNIINSKINSNEG 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S+         +  L +  L M+  YG  G +      L +I+++++LS     +T   I
Sbjct: 337 SNLFNPILIVTLVMLAIFALIMVFNYGILGFIQTIISALFLIISISILSAFNKLITPGII 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           + +++ +G+   S+++V + +++E  +   +  ++   F  ++  IFD+ +  +I  V+ 
Sbjct: 397 SSLIISLGILTSSSVIVFDNLKQEVYQGDGIQKAIKKSFKASWFGIFDTQVILVIMAVLT 456

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------------- 522
           F+ G    +  ++ + +S    +F  + + R +   ++R K                   
Sbjct: 457 FYIGSINTQEISLMLIISFSFILFLTLVLNRLIATLLVRTKIFDKKLFLLGLRKKYSNNE 516

Query: 523 --IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
             I    L  +  I    ++         + +    +     +      +        + 
Sbjct: 517 NYISKLNLINYVKISKWFSLFVFSFIVISLIVLSSLTGIFGSISQALNASANFSGGSTLS 576

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                       ++   L        +    +   N L         +    +    + +
Sbjct: 577 FQNGFLTSQQADLILDILLKNNFDSTNILVTNLGTNTLPNFLVSASSNNLINQETINLIQ 636

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                  ++   N  I    ++   +   I         + IYI  R+KW  ++    TL
Sbjct: 637 SEITNNSINVSANLFIFSTVVALNSLNVAIYSFFAGLTLIFIYITFRYKWTISISLFITL 696

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MRKNMKLYTTSIS 756
           I+D     G F +F  EF+   V + +++  YS+N+K++V  +     + N     T I 
Sbjct: 697 IIDSLLMFGIFVIFRFEFSSIFVLSWISISFYSLNEKMIVITKYSNIFKLNSGKEQTKIQ 756

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             + ++ +I   + +   T ++    ++ + ++         + +  G++ +  +SIF  
Sbjct: 757 LMENMNLTIGLIIKKIFITFLSVISFLIILLIFTQVNFYIQYLSLILGLISSFLTSIFFM 816

Query: 817 APILLFIYDWRAKNAR 832
             +++     R  + +
Sbjct: 817 NWLIIKFETIRITSQK 832



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/261 (9%), Positives = 79/261 (30%), Gaps = 6/261 (2%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                           S++++     +   IS Q      +    +  +   +  +   +
Sbjct: 246 SNPYSFVFENEDANGQSILKTTPFIAKDFLISNQQITSASSNASSITIEGNFTRFKAAQI 305

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
                  T         ++ I+  KI+          ++I  + ML    +   + + + 
Sbjct: 306 AAQINYSTSNNYFFKQISSNIINSKINSNEGSNLFNPILIVTLVMLAIFALIMVFNYGIL 365

Query: 696 AITTLILD---ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                I+    +  ++   + F        +++++  +G   +  V+V+D +++ +    
Sbjct: 366 GFIQTIISALFLIISISILSAFNKLITPGIISSLIISLGILTSSSVIVFDNLKQEVYQ-- 423

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                +  I KS   +      T +   I  +     G       ++ +          +
Sbjct: 424 -GDGIQKAIKKSFKASWFGIFDTQVILVIMAVLTFYIGSINTQEISLMLIISFSFILFLT 482

Query: 813 IFIAAPILLFIYDWRAKNARI 833
           + +   I   +   +  + ++
Sbjct: 483 LVLNRLIATLLVRTKIFDKKL 503


>gi|120598549|ref|YP_963123.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
 gi|146293372|ref|YP_001183796.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
 gi|120558642|gb|ABM24569.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
 gi|145565062|gb|ABP75997.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
          Length = 1083

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 67/513 (13%), Positives = 144/513 (28%), Gaps = 41/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++        +  +   P                      +  
Sbjct: 9   KRPVTVWMFMLAVILFGMV-----GFSRLAVKLLPDLSYPTLT---------IRTTYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 55  APVEVEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISEST 180
           +   L +D KK LL+        I+    ++  V    ++Q       +   ++      
Sbjct: 115 I--ALPLDVKKPLLLRFNPNLDPIMRLALSVPNVSEAELKQMRTYADEELKRRLEALSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++    +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQEVHILLNQEKLSQLNLNADDIKRRINEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I G             + + +  +                 I        D 
Sbjct: 213 INLSAGKVIQGDREYLVRTLNQFNSLEELGQVIVYRDEQNLVRLFEVATISDAYKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +      A +           V          + S
Sbjct: 273 TRIGSQESIELAIYKEGDANTVAVAKKLRDELAKINQ-DPKQNKLEVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  + + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALMGSVLSMLVIYLFLRNIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L IGL VD+ I+V E I     +  S   +   G       IF S +T L   + L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRCRSEGMSKLDAAVTGTKEVAGAIFASTLTTLAVFIPLVFV 451

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
               G      A+T+  ++L S+  A++ +  +
Sbjct: 452 DGIAGALFSDQALTVTFALLASLLVALTSIPML 484



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 66/220 (30%), Gaps = 6/220 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++     +L  +                        + L            V + ++ +
Sbjct: 244 VIVYRDEQNLVRLFEVATISDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKKLRDE 303

Query: 642 ITEIVPLSTIQNTEIVGPK---ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           + +I         E++  +   I   +       ++ S ++ML+           L    
Sbjct: 304 LAKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSVLSMLVIYLFLRNIIPTLIISI 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  +S  
Sbjct: 364 SIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRCRSEGMSKL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           D       E  G    +++      +P+    G     F+
Sbjct: 421 DAAVTGTKEVAGAIFASTLTTLAVFIPLVFVDGIAGALFS 460



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 79/215 (36%), Gaps = 7/215 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V L          +  +   +  +++ V  +++Q       +      +   + +I+
Sbjct: 856  QQRVALVSANLAYGDLSDAVATAQDILSQQVLPASVQARFGGQNEEMEHSFQSLKIALIL 915

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    L     ++     ++ L G  V
Sbjct: 916  AIFLVYLVMASQFESLLHPLLILFAVPMALGGSILGLYLTQTHLSVVVFIGLIMLAGIVV 975

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+ +        +     I  +    L   + T++   + +LPMA+    G 
Sbjct: 976  NNAIVLVDRINQLRSEGVQRL---HAISVAAKSRLRPIMMTTLTTTLGLLPMALGLGDGS 1032

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             V    AI + FG+ ++   ++ +   +       
Sbjct: 1033 EVRAPMAITVIFGLSLSTLLTLIVLPVLYALFDRK 1067


>gi|315604281|ref|ZP_07879347.1| protein-export membrane protein SecD [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313987|gb|EFU62038.1| protein-export membrane protein SecD [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 646

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 112/528 (21%), Positives = 211/528 (39%), Gaps = 54/528 (10%)

Query: 46  LGLDLRGGSHLVLEVDED-----DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKIT 99
           L LDL+GG+ L+L          +  +  +      +R+ +   G+    +     + I 
Sbjct: 33  LALDLKGGTQLILTPTVTGDGQREITDDDITQAISIIRNRIDASGVSESEISSLGNSNIM 92

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ----- 154
           +S       +   D +    Q     +        ++     +  +  S     +     
Sbjct: 93  VSIP-GTPSQEQLDLIRSSSQMNFRPVLRIGAAQGVIQNQPSQTEVGQSGTQSGEQSGAQ 151

Query: 155 --------VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                         + + +    +   +  + +       H   +       P     L 
Sbjct: 152 SGEDSQSGSSLSGADHAAQSGGVQSTALDAATAMSTADTDHDGTLSDTPVTTPENGSDLA 211

Query: 207 GTTAKMS-------FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
             T ++                  +G         D  G    +   V + G  L  A A
Sbjct: 212 WVTEQVMYDFLTLDCSAAADVKRVEGPSDKPYAACDDSGQIKYILGPVAVPGSDLKTANA 271

Query: 260 -----NFDPKTHKPVVDISFDEMGARRFFEVTRDNIG------------------KPLAV 296
                +    T +  V + F+E G  +F E +    G                     AV
Sbjct: 272 GLARNSNGQTTGQWAVSLQFNEAGKEKFKETSTILYGFHDADAAGSSFYRGRPDRNSFAV 331

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           VLDG V+TAP +N  I +G+A+I+GNFT ++A  LA  L  GSLP+   +  E+ + A +
Sbjct: 332 VLDGTVITAPSMNAIISTGEAEITGNFTAKSASALANQLSFGSLPLNFEVESEQQISATI 391

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---- 412
           G+D +  G  A + G +L+++++I  Y    +++  S+ +  ++T  +++LL   +    
Sbjct: 392 GTDHLTIGLWAALIGFLLVIVYLIWQYRGLAVISAGSLLVASVITYLVIALLSWAMGYRL 451

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           +L  +AG+++ IG+  DS I+  ER+R+E R  + +  +++ G+ RA  TI  S+   L+
Sbjct: 452 SLAGVAGLIMAIGVTTDSFIVYFERVRDEVRDGRPLRAAVEEGWDRAKRTILVSDAVNLV 511

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           A VVL+    G V+GFA T+G++ +I +         MM  +IR +  
Sbjct: 512 AAVVLYLLAVGGVQGFAFTLGVTTVIDIAVIFLFTHPMMELLIRTRFF 559



 Score =  102 bits (254), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/183 (11%), Positives = 73/183 (39%), Gaps = 6/183 (3%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT-- 705
              +++ + +   I  + +  G+   +I  + +++Y+  +++    + A + L+  +   
Sbjct: 378 NFEVESEQQISATIGTDHLTIGLWAALIGFLLVIVYLIWQYRGLAVISAGSLLVASVITY 437

Query: 706 KTLGFFAL-FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             +   +   G   +L  VA ++  IG + +  +V ++R+R  ++        R  +++ 
Sbjct: 438 LVIALLSWAMGYRLSLAGVAGLIMAIGVTTDSFIVYFERVRDEVRD---GRPLRAAVEEG 494

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +      + +     ++ + + +     +  FA  +    V+  +       P++  + 
Sbjct: 495 WDRAKRTILVSDAVNLVAAVVLYLLAVGGVQGFAFTLGVTTVIDIAVIFLFTHPMMELLI 554

Query: 825 DWR 827
             R
Sbjct: 555 RTR 557


>gi|17989260|ref|NP_541893.1| acriflavin resistance protein F [Brucella melitensis bv. 1 str.
           16M]
 gi|17985122|gb|AAL54157.1| acriflavin resistance protein f [Brucella melitensis bv. 1 str.
           16M]
          Length = 409

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 27/374 (7%), Positives = 78/374 (20%), Gaps = 36/374 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVNDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAVGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++G               +    I                 +       
Sbjct: 231 QIQLTLTTQGRLTGA-------------KQFENIIIRANPDGSSVRLKDVARVELAAQSY 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L     +          +     E    +   L+          +          
Sbjct: 278 DTIGRLNGKPASVIAVYQAPGSNAVAAAEGVRNVMEQLKQSFPAGLDYKITYGTTVFVSS 337

Query: 358 SDSIYKGTCAIVAG 371
           +      T      
Sbjct: 338 TIHEVIKTLLESLC 351


>gi|226326485|ref|ZP_03802003.1| hypothetical protein PROPEN_00333 [Proteus penneri ATCC 35198]
 gi|225205084|gb|EEG87438.1| hypothetical protein PROPEN_00333 [Proteus penneri ATCC 35198]
          Length = 1027

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 80/653 (12%), Positives = 169/653 (25%), Gaps = 40/653 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I   G L  +   +       +P       I+         +  L   
Sbjct: 9   QRPVATTLLSLAISLCGALGFMLLPVAPLPQVDYP------VIN--------IYASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S       ITL F  ++     A  V   L  
Sbjct: 55  SPETMASSVATPLERSLGRIAGIDEMTSSSSLGSTSITLVFDLNKDINTAARDVQAALNA 114

Query: 122 VNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             S L      +     +   +  I++     D    +  E       +   +I   E  
Sbjct: 115 SQSLLPSGMPSRPRYYKSNPSDAPIMILTLTSD--TQNTGELYDLASTRLAQKISQIEGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +       L  +    +P  L     +   +       N  +          R      
Sbjct: 173 SEVSVGGGSLPAIRVALNPDALFNQNVSLDDVRKAINQANVRRPQGFINNDENRWQIQTN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    E                       I                 +   +      
Sbjct: 233 DELSKAAE--------------------YRPIIVHYNQEAVVRLGDVAQVTDSVQNSRAA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +         +   +A  +   T+         LR          V +        S +
Sbjct: 273 GMSGGEPAILLVIRREAGANIIETVNRIRDELPELRELIPASVDLKVAQDRTPTIRASLA 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +   AI   LV++V+F+ +  G+  L+   ++ +++I T + + L G +L   S+  +
Sbjct: 333 EVERALAIAVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFSAMYLCGFSLNNLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I+V E I            +   G      T+   +I+ +   + L   
Sbjct: 393 TVATGFVVDDAIVVLENISRHIENGLKPKDAALKGVGEVGFTVLSMSISLVAVFIPLLLM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + FAIT+  +I IS+F ++++   M   +++  K K+          L    
Sbjct: 453 DGLVGRLFKEFAITLTTAIAISLFVSLTLTPMMCAHLLKGMKPKAQSHLRGFGKLLFRLQ 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                           ++    +   L  +            Q        V      S 
Sbjct: 513 QGYSVTLQAALRHRRWVMAIFLATLGLNAYLYISAPKTFFPDQDTGRLMGFVRADQSISF 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               +      Q  + +K+      +  G  +    +   +          + 
Sbjct: 573 QSMKEKMTRFMQEINADKDVDSVTGFTGGGRINSGFMFISLNPLSERTDSANQ 625



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 7/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAIAVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFSAMYLCGFSLNNLSLMALTVAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +     +  +D   K + E     +  S++     +P+ +  
Sbjct: 397 GFVVDDAIVVLENI---SRHIENGLKPKDAALKGVGEVGFTVLSMSISLVAVFIPLLLMD 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           G V      FAI +   I ++   S+ +   +   +       A
Sbjct: 454 GLVGRLFKEFAITLTTAIAISLFVSLTLTPMMCAHLLKGMKPKA 497



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 92/214 (42%), Gaps = 6/214 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +       +  +++ +TE+   +T++ T     +I +E I+  ++ ++ + + 
Sbjct: 803  TIAFNIPEGYTLADAINSIERTMTELGVPNTVRGTFAGTAQIFQETIKSQLILILAAIVT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + + + ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYLVLGVLYESYIHPLTILSTLPSAGVGALLALQLFDTPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D            +S ++ I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  IMVD--FAITAQREGKLSAKEAIIQASLLRFRPILMTTLAALFGALPLMLGSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               I +  G++++   +++    I LF    R +
Sbjct: 981  PLGITIVGGLLMSQLLTLYTTPVIYLFFDGLRER 1014


>gi|239813978|ref|YP_002942888.1| acriflavin resistance protein [Variovorax paradoxus S110]
 gi|239800555|gb|ACS17622.1| acriflavin resistance protein [Variovorax paradoxus S110]
          Length = 1056

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 82/601 (13%), Positives = 174/601 (28%), Gaps = 38/601 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L +     G+            +   PS      I+         +  L   
Sbjct: 9   RRPAMTVLLSAAAVVAGIFA-----YFSIPVAALPSYNTP-VIN--------VNAQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   + +  ++  S +           Q  + ITL F  SR  +  A  V   L  
Sbjct: 55  SPDTMASSVALPLEKQFSTIPGLQTISSVNTQGVSSITLEFVSSRDIDAAAVDVQAALLR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +  +           + VL    +     +  E +          +   +   
Sbjct: 115 AQRQLPQELTQLPSYRKVNPADAPVLF-IALISPSMNPAELNDYAENLISPTLSTIDGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     R    +  + +   L     T  +++      N +          + D      
Sbjct: 174 QVGVYGRKAFAVRIKANADLLNARNITLDELAKAVNSANANTPVG------VLDGPRQTL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +++                +    +   +             I      V    
Sbjct: 228 TIQANRQLT--------------RAEDFAKLIVGQRNGAPVRLDEVATIEDSFESVKTAS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++    L    +A         +      +   +   
Sbjct: 274 SFNGQSSISLAVQRQPNANTVQVVDAVRALIPRFKAELPQSVEIHMVNDRSLSIREAVHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      LV++V+F+ +      L+   +I +++I  +ALL   G +L   S+ GI 
Sbjct: 334 VQLTLLGTVALVVLVIFLFLHRLVATLIPAATIPISLIGAVALLYAFGYSLDNVSLLGIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E I     K      +   G      TI   +I+ +   + +FF  
Sbjct: 394 LAVGLVVDDAIVVLENIMRYVEKGMEPMAAALRGAREVGFTIISISISLVAVFIPIFFMP 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FA+ + L++L+S   ++++V  +   ++++   K   ++           +
Sbjct: 454 GVIGLLFHEFAVVVALAVLVSAIVSLTLVPMLASRLLKHVPRKDGALDHEEEHPEPGTAV 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              F R   W     +     ++       L  G  F     L V   +          +
Sbjct: 514 GRAFERGYRWVHANYMRTLDWTLAHRKLMLLLAGGTFVVTAWLFVSIPKGFFPEEDIGQI 573

Query: 599 E 599
           +
Sbjct: 574 Q 574



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 57/182 (31%), Gaps = 3/182 (1%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
               +  V+ Q           V  ++ +   E+     I         I   +    + 
Sbjct: 278 QSSISLAVQRQPNANTVQVVDAVRALIPRFKAELPQSVEIHMVNDRSLSIREAVHDVQLT 337

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +   A+ +L+      +    L    T+ + +   +     FG   +  ++  +   +G
Sbjct: 338 LLGTVALVVLVIFLFLHRLVATLIPAATIPISLIGAVALLYAFGYSLDNVSLLGITLAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +   M+     +       +   E     +  S++     +P+    G
Sbjct: 398 LVVDDAIVVLENI---MRYVEKGMEPMAAALRGAREVGFTIISISISLVAVFIPIFFMPG 454

Query: 792 SV 793
            +
Sbjct: 455 VI 456



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 5/146 (3%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   +   L  +  L       L    +FG +  L A   +L LIG    + +++ D  
Sbjct: 885  VLYESYIHPLTILAGLPSAAVGALLSLKIFGFDLTLIATIGILLLIGIVKKNAIMMIDFA 944

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
                   T  +   D I ++        + T++AA +  LP+A+    G  +     + +
Sbjct: 945  LD--AQRTEGMKPVDAIREACRLRFRPILMTTLAALMGALPLALGLGAGAELRQPLGVAV 1002

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWR 827
              G++ +   +++I   I L +  + 
Sbjct: 1003 VGGLIFSQVITLYITPAIYLALDRYS 1028


>gi|107101973|ref|ZP_01365891.1| hypothetical protein PaerPA_01003020 [Pseudomonas aeruginosa PACS2]
          Length = 1036

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 64/555 (11%), Positives = 159/555 (28%), Gaps = 32/555 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FGLLPVAPLPNVDFPAIV---------VSASLPGASPETMASSVATPLERSLGRIAGISE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S       + L F   +  +  A +V   + G  S L      N            +
Sbjct: 80  MTSSSSLGSTTVVLVFDLEKDIDGAAREVQAAINGAMSLLPSGMPNNPSYRKANPSDMPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    +        E           ++   +   Q       L  +  + +P  + Q  
Sbjct: 140 MV-LTLTSETQSRGEMYDLASTVLAPKLSQVQGVGQVSIGGSSLPAVRVDLNPDAMSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N++                    +    E                  
Sbjct: 199 LSLDSVRTAIAAANSNGPKGAVEKDDKHWQVDANDQLRKAREYE---------------- 242

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
              + I ++              +   +  V +            I + +   +     +
Sbjct: 243 --PLVIHYNADNGAAVRLGDVAKVSDSVEDVRNAGFSDDLPAVLLIVTRQPGANIIEATD 300

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                  +L+    P     V +    +   S    + T  I   LV++V+F+ +  G+ 
Sbjct: 301 AIHAQLPVLQELLGPQVRLNVMDDRSPSIRASLEEAELTLLISVALVILVVFLFLRNGRA 360

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ +++I T A++ L   +L   S+  +++  G  VD  I+V E I     +  
Sbjct: 361 TLIPSLAVPVSLIGTFAVMYLCDFSLNNLSLMALIIATGFVVDDAIVVVENIARRIEEGD 420

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
               +   G  +   T+    ++ +   + L   G   G   R FA+T+  +IL+S+  +
Sbjct: 421 PPIQAAITGARQVGFTVLSMTLSLVAVFIPLLLMGGLTGRLFREFAVTLSAAILVSLVVS 480

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +++   +   +      +    +   R         +++  +  W +  S L  +  +  
Sbjct: 481 LTLTPMLCARL-LRPLKRPEGASLARRSDRFFAAFMLRYRASLGWALEHSRLMVVIMLAC 539

Query: 564 LFTHGLNYGIDFKGG 578
           +  +   + +  KG 
Sbjct: 540 IAMNLWLFVVVPKGF 554



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 68/205 (33%), Gaps = 6/205 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +V  Q       A   +   +      + P   +   +   P I   L    +  +I  A
Sbjct: 286 IVTRQPGANIIEATDAIHAQLPVLQELLGPQVRLNVMDDRSPSIRASLEEAELTLLISVA 345

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L     N  ++ A++   G+ V+D 
Sbjct: 346 LVILVVFLFLRNGRATLIPSLAVPVSLIGTFAVMYLCDFSLNNLSLMALIIATGFVVDDA 405

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +                 +     +  +++     +P+ + GG      
Sbjct: 406 IVVVENI---ARRIEEGDPPIQAAITGARQVGFTVLSMTLSLVAVFIPLLLMGGLTGRLF 462

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPI 819
             FA+ ++  I+V+   S+ +   +
Sbjct: 463 REFAVTLSAAILVSLVVSLTLTPML 487


>gi|83593099|ref|YP_426851.1| SecD export membrane protein [Rhodospirillum rubrum ATCC 11170]
 gi|83576013|gb|ABC22564.1| SecD export membrane protein [Rhodospirillum rubrum ATCC 11170]
          Length = 488

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 141/521 (27%), Positives = 231/521 (44%), Gaps = 39/521 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W  I   ++   G+  +L N +P +             +SLGLDL+GGS  ++++D  
Sbjct: 6   SLWKAIPVILVVLAGITFSLANVVPGAGEGGLRWW---RPLSLGLDLKGGSTFLIDLDAP 62

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V+      +    + L+ E IG  +       + +  AD+  +      +        
Sbjct: 63  ALVHETQVALAASAGAALRGERIGGAANLGEDGAVVVDIADAGQRAAALRLLR------- 115

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    +  +        I +  +     +     + + + ++RQR+ + G+SE  ++R
Sbjct: 116 -GLEAGTEAEITP---AGAIRLTFTAIAQAERTDRMVARGLGVLRQRLREAGLSEIRLER 171

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
               RIL+ LPG  D  R+R LL   A++S                          + L+
Sbjct: 172 RSDRRILVALPGLDDSERVRDLLWRPARLSIRAANGEGGTIDGDRLTSAQATVQNGKPLI 231

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             + +  G          +         I  + +  R   +     IG            
Sbjct: 232 SLRFDGVGERRIIQMRGGEGGERGLEATIDGEAVAVRLLRQPGSGGIGL----------- 280

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                          + G F+   A  LA MLR G+LP    IVEER VG  LG+D +  
Sbjct: 281 --------------LLDGAFSTRAAQDLALMLRVGALPTPFRIVEERTVGPSLGADRVAA 326

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G  A  AG + + +F+I +YG +G+ A  ++ LN  L   +LS LGATLTLP IAGI L 
Sbjct: 327 GALASAAGALAVTVFLIAVYGLFGVFATIALGLNFCLLFGMLSGLGATLTLPGIAGIALT 386

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           IG+AVD+++L+ ERI EE R   +V  +L  GF +A+S + D+NI  L    +LF+ GGG
Sbjct: 387 IGMAVDASVLIFERIGEEARAGLAVDEALRAGFGKAFSAVLDANILTLGVGALLFWLGGG 446

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            VRGFA+T+ L  + ++FTA+ + R ++   +R  + K+I 
Sbjct: 447 PVRGFAVTLTLGAVSALFTAMLLNRLIVALWLRLARPKTIP 487



 Score =  105 bits (262), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 82/249 (32%), Gaps = 4/249 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +          LE+   G+        +           G    +      +  +
Sbjct: 240 ERRIIQMRGGEGGERGLEATIDGEAVAVRLLRQPGSGGIGLLLDGAFSTRAAQDLALMLR 299

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +  +     I     VGP +  + +  G +     A+A+ +++   +   F + A   L 
Sbjct: 300 VGALPTPFRIVEERTVGPSLGADRVAAGALASAAGALAVTVFLIAVYGL-FGVFATIALG 358

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L+     G  +  G    L  +A +   IG +V+  V++++R+ +  +     ++  + +
Sbjct: 359 LNFCLLFGMLSGLGATLTLPGIAGIALTIGMAVDASVLIFERIGEEARA---GLAVDEAL 415

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                +     +  ++        +   GG  +  FA+ +  G V A  +++ +   I+ 
Sbjct: 416 RAGFGKAFSAVLDANILTLGVGALLFWLGGGPVRGFAVTLTLGAVSALFTAMLLNRLIVA 475

Query: 822 FIYDWRAKN 830
                    
Sbjct: 476 LWLRLARPK 484


>gi|88799891|ref|ZP_01115463.1| AcrB/AcrD/AcrF family protein [Reinekea sp. MED297]
 gi|88777322|gb|EAR08525.1| AcrB/AcrD/AcrF family protein [Reinekea sp. MED297]
          Length = 1046

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 59/558 (10%), Positives = 157/558 (28%), Gaps = 38/558 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I  IGL         +  ++  P+                  +     
Sbjct: 9   KQPVFATMIMVAILVIGLYS-----YQRLPIESIPNVDLPVVA---------VVVSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + +          +  Q  + L F      +     V   +  
Sbjct: 55  SPEAVENGVIEPIENSVNTISGIDSIQSIAQANQAMVILLFDMDVQSDVAVQDVRDRIST 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++  L       +++     +  ++    + D++     E +       + ++ I +   
Sbjct: 115 LSGALPDGANDPMILRFDPNQFPVLSLAVSSDEL--STRELTQLTEDVIVKRLSIIQGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  I  Q      P RL     +  ++       N +         + + +     
Sbjct: 173 SATAVGGIPRQYNLNVVPERLIAYNVSMGQVINALSQVNQNLPAGALTDSYSKQTLQING 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                    + +  I   + G   F                   
Sbjct: 233 EFA-------------------HPEEFLDVIVAYQGGQPVFVRDVATLADGEAEPASAAL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +     +    +  ++           V          S   
Sbjct: 274 LNGQSALAVDIIKVQGANTVGVVDDIQAEIDKLMAQELPDHVQIDVVRNMAREVQHSFDS 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++++F+ +   +  ++   ++ +++I T+  L  LG TL + S+  + 
Sbjct: 334 VINMLIEGAMLTVLIVFLFLNSWRSTVITGLTLPISIIGTMIALYALGFTLNMMSLMALS 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL +D  I+V E I    +  +    +   G +     +  + ++ +   + + F  
Sbjct: 394 LAVGLLIDDAIVVRENIMRHLQMGKGHIQAAFDGTNEIGLAVLATTLSIVAVFLPVAFME 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   R    F +T+ +++LIS+F A ++   +          ++     L R     D  
Sbjct: 454 GIIGRFFLQFGVTVSVAVLISLFVAFTLDPMLSSVWYDPSAAENAKRGFLGRQVERFDRF 513

Query: 539 AIQFMRARFWGVGISILF 556
            +         +   +  
Sbjct: 514 FVWLSGVYQNLLKWCLRH 531



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 73/214 (34%), Gaps = 9/214 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-I 675
             +              +   + K + + +P     +      +  +      I  +I  
Sbjct: 282 VDIIKVQGANTVGVVDDIQAEIDKLMAQELPDHVQIDVVRNMAREVQHSFDSVINMLIEG 341

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           + + +LI       W   +    TL + I  T+      G   N+ ++ A+   +G  ++
Sbjct: 342 AMLTVLIVFLFLNSWRSTVITGLTLPISIIGTMIALYALGFTLNMMSLMALSLAVGLLID 401

Query: 736 DKVVVYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           D +VV    R+N M+                NE     + T+++     LP+A   G + 
Sbjct: 402 DAIVV----RENIMRHLQMGKGHIQAAFDGTNEIGLAVLATTLSIVAVFLPVAFMEGIIG 457

Query: 795 G---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                F + ++  ++++   +  +   +    YD
Sbjct: 458 RFFLQFGVTVSVAVLISLFVAFTLDPMLSSVWYD 491



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 63/161 (39%), Gaps = 8/161 (4%)

Query: 679  AMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + IY+ +      +   L  +  L + +   +    + G   N+ ++   + L+G  V 
Sbjct: 872  VIFIYLVLASQFGSFLQPLAIMVALPMAVIGVMLGLLVGGSTLNMYSMIGFIMLMGLVVK 931

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
            + +++ D    N +     +   D +  +        + T++A    +LPMA+    G  
Sbjct: 932  NAILLVDNA--NQQQRERGMHLFDALVVAGQTRFRPIIMTTLAMIFGMLPMALNLHGGSG 989

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                 A  +  G++ +   ++ +   +L ++  +  +  R+
Sbjct: 990  ENAPMAHAVIGGLISSTLLTLIVVPVVLTYVDSFGKRVGRL 1030


>gi|78047787|ref|YP_363962.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036217|emb|CAJ23908.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1169

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 72/570 (12%), Positives = 156/570 (27%), Gaps = 51/570 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 30  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 75

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +  + +V   ++ 
Sbjct: 76  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQASLEVRDKMEA 135

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ K  +L+        I+        +  +    I                ++
Sbjct: 136 L--SLPLETKPPVLLRFNPSTEPIMRLALSPKQAPASDTDAIRQLTGLRRYADEDLKKKL 193

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 194 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLNLPIDNVITRLKEENVNISGGRLEEGSQR 253

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 254 YLVRTVNQFVDLDEIRNMLVTTQSSSGSAAEAAMQQMYAIAASTGSQAALAAAAEVQSTS 313

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              S    G           + +          L      +     +   +   T     
Sbjct: 314 SSSSSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKEAVELAIYKEGDANTVSTAAALR 373

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 374 KRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 433

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +   V 
Sbjct: 434 ISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLGVL 493

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
            +   G       +  S +T +   + L F     G   R  A+T+ ++I IS+  ++++
Sbjct: 494 DAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLVVSMTL 553

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +  +             + +          
Sbjct: 554 IPMLSSLKGAPPMAFPDEPSHPDWRPEQRW 583



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 66/207 (31%), Gaps = 6/207 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           + + +++    +     I   E     I   +       VI 
Sbjct: 354 ELAIYKEGDANTVSTAAALRKRLEQLKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIG 413

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 414 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVD 473

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +   D       E     + +++      LP+       G 
Sbjct: 474 DSIVVLESI---AKARERGLGVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 530

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    A+ +A  I ++   S+ +   +
Sbjct: 531 LFRDQALTVAIAIAISLVVSMTLIPML 557



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +     D      V E+      + +      +  
Sbjct: 910  AAVAEVLATTGPSEIHRADQTRVAIVSASLKDIDLGGAVREVETMVRKDPLAAGVGMHIG 969

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 970  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 1028

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++     ++ L+G    + +++ D++    +L    +  R+ + +     L   + 
Sbjct: 1029 GKPISVVVFIGLILLVGLVTKNAIILIDKVN---QLREDGVPKREALIEGARSRLRPIIM 1085

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            T++      LP+AV    G  V    AI +  G
Sbjct: 1086 TTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1118


>gi|88809909|ref|ZP_01125414.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 7805]
 gi|88786099|gb|EAR17261.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           WH 7805]
          Length = 1065

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 58/454 (12%), Positives = 130/454 (28%), Gaps = 14/454 (3%)

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                +    ++  + +        +   + Q+ I++ F ++   +     V   +    
Sbjct: 27  VTEQAVTNPLEQQINGVPGASYISSTSNMEGQSIISVYFDETTDIDIDQVNVQNRVSLAM 86

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +L        +         ++  Q +       A   +  + +Q    +         
Sbjct: 87  PQLPSQVSDTGVSVKQSTPSILLAYQVSSTDGQFDAAYLNGLVYQQLYYPLERVPGVATV 146

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                         DP +L     T  ++       N +  G + G           Y +
Sbjct: 147 NILGGTNPAYWLFIDPDKLAANNLTANQVVDAVQAQNTTAIGGLVGGPPASGDQAYTYPL 206

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                     L     N         + IS  E G     +   +              +
Sbjct: 207 ----------LVQNNGNLLSLEDFENLIISRTETGNLLLLKDVGEVQYGFNNYTTAAVDV 256

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           +               +                A + P                S     
Sbjct: 257 SNHDTVSVAVFQTPDSNALDVANAVVKQIDAFAATAPPGVTVSQVYNIGQFIESSVEGVV 316

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
               +   LVL++LF+ +   +  +V   +I ++++ T A + + G ++   ++ G+VL 
Sbjct: 317 DALGLAIVLVLLILFIFLQNWRATVVPSLAIPISLVGTFAFIKVFGFSINQLTLLGLVLA 376

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
            GL VD  I+V E + +          +        +  +  + +  +   V + F+ G 
Sbjct: 377 TGLVVDDAIVVIEAVSKNIESGMKPRQAALACMGELFGALVATALVLMAVFVPVAFYPGS 436

Query: 484 ---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                + FA+T+  SI IS F A++    +   I
Sbjct: 437 IGIIYQQFALTIAFSIAISAFNALTFSPMLSGLI 470



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 79/219 (36%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R     G         + +          +            + +L       ++  
Sbjct: 831  NLYRTVLIQGAQAVGKSSGQALSSIQALFKQENFNNIGYAFTGLAALQLSAGSASVLVFG 890

Query: 677  AIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +++Y+ +      +   +  + T+ L +   L F A+  I+ N+ A   ++TLIG +
Sbjct: 891  FGILIVYLVLSAQYESYVTPVIILMTVPLAMLGALVFLAIRSIDLNIYAQVGLVTLIGLA 950

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +++ + + +  +     +S  + +  S    L   + T++AA    LP+ V    G
Sbjct: 951  AKNGILIVE-VAE--QHLEEGMSASEAVIASAESRLRPILMTAIAALAGFLPLVVANGAG 1007

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                 S    +  G+VVA   S+ +  P  + I     +
Sbjct: 1008 AQSQQSLGTVIFGGLVVATVLSLGVVPPFYVVIKGLEER 1046



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +     + + +  T  F  +FG   N   +  ++   G  V+D +VV + + KN+ 
Sbjct: 337 WRATVVPSLAIPISLVGTFAFIKVFGFSINQLTLLGLVLATGLVVDDAIVVIEAVSKNI- 395

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
              + +  R      + E  G  V T++      +P+A + GS   +   FA+ +AF I 
Sbjct: 396 --ESGMKPRQAALACMGELFGALVATALVLMAVFVPVAFYPGSIGIIYQQFALTIAFSIA 453

Query: 807 VAASSSIFIAAPI 819
           ++A +++  +  +
Sbjct: 454 ISAFNALTFSPML 466



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 62/516 (12%), Positives = 138/516 (26%), Gaps = 42/516 (8%)

Query: 12   SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             M+   G ++              P             L+ G+ L         +   L+
Sbjct: 554  VMVTLAGGIVLTVLAFTALPSAFIPDEDQGYLAGF-YQLQNGASLSQTETMAKQIAAILK 612

Query: 72   MYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-------SRFKENIADKVTLFLQGVNS 124
               D L + +   G G       Q  I +           +     IAD++   L  ++S
Sbjct: 613  EEKDVLNANVIS-GYGFNGSSPDQGTILIGLKPLSERPGAANNSFAIADRLNAKLSSLSS 671

Query: 125  KLNVDPKKNLLVTTTEK-EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L V  +   +   + +       +    +   +   +Q+  +I+      G +      
Sbjct: 672  GLAVVGQPPAVPGFSAQGGFYFQFNDLTGNYSFNQLDDQAQTLIK-----AGKASGNFSS 726

Query: 184  LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
            L +  I           R                       G  +      +       V
Sbjct: 727  LYTQFIPSAPAFGLKVDRAVMGALNVDYKEAM--STIAVLAGGSYTGLTYENGQVRNVYV 784

Query: 244  EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
            +      G               K             +    +   I     +     + 
Sbjct: 785  QA-----GEEQRDTVEKILSYYVKNRDGDLIQVSQFAKSELSSAPPIISHYNLYRTVLIQ 839

Query: 304  TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
             A  + ++     + I   F  E    +                      A L   +   
Sbjct: 840  GAQAVGKSSGQALSSIQALFKQENFNNI---------------GYAFTGLAALQLSAGSA 884

Query: 364  GTCAIVAGLVLIVLFMIVLYGKWGL--VADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   G++++ L +   Y  +    +   ++ L ++  L  L++    L + +  G+V
Sbjct: 885  SVLVFGFGILIVYLVLSAQYESYVTPVIILMTVPLAMLGALVFLAIRSIDLNIYAQVGLV 944

Query: 422  LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
              IGLA  + IL+ E   +   +  S   ++          I  + I AL   + L    
Sbjct: 945  TLIGLAAKNGILIVEVAEQHLEEGMSASEAVIASAESRLRPILMTAIAALAGFLPLVVAN 1004

Query: 480  -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G  + +     +   ++++   ++ +V    + I
Sbjct: 1005 GAGAQSQQSLGTVIFGGLVVATVLSLGVVPPFYVVI 1040


>gi|238026669|ref|YP_002910900.1| AcrB/AcrD/AcrF family protein [Burkholderia glumae BGR1]
 gi|237875863|gb|ACR28196.1| AcrB/AcrD/AcrF family protein [Burkholderia glumae BGR1]
          Length = 1040

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 71/550 (12%), Positives = 155/550 (28%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GLL      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLLALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGASVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +L+   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPILT-LAITSKTLPLSQVQDLTDTRLAMKISQVSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPLALAHYGLNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++      +                      R         +         G  
Sbjct: 229 INANDQLTSADQYDSA--------------VVAYKNGRPVMLTDVAKVVAGTENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + A          +   +   T+++   +   L+          +          +    
Sbjct: 275 VDAEPAIIVNVQRQPGANVIQTVDSIKAILPKLQETLPAALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELALSVVLVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E +     +  S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENVARYVEQGDSPLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+   K            I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPKGQHRFETRVHAAIDYVIA 514

Query: 540 IQFMRARFWG 549
                 R+  
Sbjct: 515 RYATALRWVL 524



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 53/127 (41%), Gaps = 6/127 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +    ++ L +  TL    L G   N  ++ A+    G+ V+D +V+ + +    +    
Sbjct: 360 IIPSLSVPLSLIGTLAVMYLAGFSLNNLSLMALTIATGFVVDDAIVMIENV---ARYVEQ 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             S  +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A 
Sbjct: 417 GDSPLEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAV 476

Query: 811 SSIFIAA 817
            S+ +  
Sbjct: 477 VSLTLVP 483



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIY 824
             ++F    I L   
Sbjct: 1001 LTLFTTPVIYLGFD 1014


>gi|163752184|ref|ZP_02159387.1| AcrB/AcrD/AcrF family protein [Shewanella benthica KT99]
 gi|161327913|gb|EDP99090.1| AcrB/AcrD/AcrF family protein [Shewanella benthica KT99]
          Length = 396

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 46/410 (11%), Positives = 117/410 (28%), Gaps = 23/410 (5%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +    ++  S ++       S R  ++ +TL F   R  E  A+ +   + G+ + 
Sbjct: 2   VESRITQLVEDRISGVEGIRHISSSSRDGRSTVTLEFDVDRDIEAAANDIRDRVSGLLNN 61

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
           L  + +   +      +  I+      D      ++ +    R   D++ + +       
Sbjct: 62  LPEEAEPPEVQKANGGDEVIMWLNLVSD--QMTTLQLTDYARRYLTDRLSVIDGVANIRI 119

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
               +  +    D   L     T   +       N          +    +   +     
Sbjct: 120 GGGKVYAMRIWIDRQALAARNLTVPDIERVLKSENVELPAGSVESKDRHFTVRVERSFST 179

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
             + +                     +  +              +               
Sbjct: 180 VEDFT-------------------NLVLSEGDDGYLIKLGDVARVEIGSEEERIMFRGNR 220

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
             +     S ++  +          L   +               +      S      T
Sbjct: 221 EAMIGLGISKQSTANTLDVSRATNALVDEINPTLPAGMEIKRSYDSSVFIEASVREVYQT 280

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
             I   LV+IV+++ +   +  L+   ++ ++++ T  +L  LG T  + ++  ++L IG
Sbjct: 281 LFIAMLLVIIVIYLFLGSVRAMLIPALTVPVSLMATFIVLYALGYT--IMTLLAMILAIG 338

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + VD  I+V E I     +  S   +  +G       +  + +  + +  
Sbjct: 339 MVVDDAIVVLENIHRRIEEGDSPLKAAYLGSREVAFAVVATTLVLVRSLC 388



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 55/153 (35%), Gaps = 8/153 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A   +++ +   +   + +    ++ +      RE+ +   + +++  I + +++   
Sbjct: 240 SRATNALVDEINPTLPAGMEIKRSYDSSVFIEASVREVYQTLFIAMLLVIIVIYLFLG-- 297

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    T+ + +  T       G  + +  + A++  IG  V+D +VV + +   
Sbjct: 298 -SVRAMLIPALTVPVSLMATFIVLYALG--YTIMTLLAMILAIGMVVDDAIVVLENIH-- 352

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            +      S          E     V T++   
Sbjct: 353 -RRIEEGDSPLKAAYLGSREVAFAVVATTLVLV 384


>gi|85715427|ref|ZP_01046409.1| Acriflavin resistance protein [Nitrobacter sp. Nb-311A]
 gi|85697848|gb|EAQ35723.1| Acriflavin resistance protein [Nitrobacter sp. Nb-311A]
          Length = 1043

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 76/611 (12%), Positives = 161/611 (26%), Gaps = 45/611 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I  +GL+       P   +   P                     L   
Sbjct: 11  RYPIGTSLLMAGILFVGLVA-----FPLLPVAPLPQVDFPTIQ---------VQASLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       IT+ F  +R  +  A+ V   +  
Sbjct: 57  SPETMASSVAQPLERQMAQIPGIAQMTSTSSIGSTSITVQFDLNRNVDGAANDVQRAINA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              S ++   +           S +   Q   QI       
Sbjct: 117 AGGQLPKNLPSPPTYRKVNPADSPIML-LSATSDTLPLTTVSDDTDAQLAQQISQISGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  + DP++L     +   +     +                       
Sbjct: 176 QVFVGGQQKPAIRIQIDPAKLVAKGLSLEDVRNQISV--------------------TTV 215

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G       AN      K   D+                             
Sbjct: 216 NSPKGSIDGGTRSYTIYANDQLTESKDWNDVIIAYRNGAPLRIRDIGRAVTGPEDNKRAA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I   +   +   T++        L A   P     +          +   
Sbjct: 276 WANGRRGVFLIIFKQPGANVIDTVDRIKAELPRLIAAIPPAIKIDLISDRTTTIRAAVED 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +      ++   ++ L ++   AL+   G +L   S+  + 
Sbjct: 336 VQLTLLITVVLVVLVIFLFLRSFWATIIPSVTVPLALLGACALMWPFGYSLNNLSLMALT 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E I     + +    +   G      TI   +I+ +   + L   G
Sbjct: 396 ISVGFVVDDAIVVLENISRHIERGEKPMAAALTGAREIGFTILSISISLVAVLIPLLLMG 455

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FAIT+ ++IL+S+  ++++   M    +R                     +
Sbjct: 456 GIIGRLFREFAITLAMAILVSLVVSLTLTPMMASRFLRSHDSVQHGRLYQFSERGFDAML 515

Query: 539 AIQFMR-------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                         R   +   +   +     +      +     G I     A + +  
Sbjct: 516 NAYRRGLDLVLRWRRTTLLVFFMTLGLSVYLFIIIPKGFFPQQDNGMILGTSEAAQDISF 575

Query: 592 SVVRSNLESLQ 602
           + ++   E L 
Sbjct: 576 AEMKKKQEELG 586



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             ++  +    T+ L +         FG   N  ++ A+   +G+ V+D +VV + +   
Sbjct: 356 RSFWATIIPSVTVPLALLGACALMWPFGYSLNNLSLMALTISVGFVVDDAIVVLENI--- 412

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
            +                 E     +  S++    ++P+ + GG +      FAI +A  
Sbjct: 413 SRHIERGEKPMAAALTGAREIGFTILSISISLVAVLIPLLLMGGIIGRLFREFAITLAMA 472

Query: 805 IVVAASSSIFIAA 817
           I+V+   S+ +  
Sbjct: 473 ILVSLVVSLTLTP 485



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 90/224 (40%), Gaps = 18/224 (8%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   + + +   ++ +       V   + E+    T+  +     +  ++ +    + +
Sbjct: 804  GQFPAITISFNLAENASLGDATAAVHNAMRELGAPGTLNGSFQGTAQAFQQSLGTVPLLI 863

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI-- 730
            + + + + + + I ++ +   +  ++TL       L    LFG +F+L A+  ++ LI  
Sbjct: 864  LAALVVVYLILGILYESYIHPITILSTLPSAGVGALATLMLFGYDFSLIALIGIILLIGI 923

Query: 731  ----GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
                G  + D  +V +R           +S  + I K+        + T+MAA +  +P+
Sbjct: 924  VKKNGIMMVDFAIVAER--------EEHLSPEESIRKAALLRFRPIMMTTMAAMLGGVPL 975

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +    G  +       M  G++V+ + ++F    + L++  + 
Sbjct: 976  MLGTGTGSEIRQPLGYAMVGGLLVSQALTLFTTPVVYLYLDQFS 1019


>gi|148981248|ref|ZP_01816339.1| putative multidrug resistance protein [Vibrionales bacterium
           SWAT-3]
 gi|145960944|gb|EDK26271.1| putative multidrug resistance protein [Vibrionales bacterium
           SWAT-3]
          Length = 1021

 Score =  144 bits (362), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 73/550 (13%), Positives = 166/550 (30%), Gaps = 30/550 (5%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D + GF+    ++  +          S     + IT++   +         +     
Sbjct: 35  ASADLIQGFITQPLEQAVAQADNIDYMTSSSVLGSSTITVNMKLNTDPNAALSDILAKTN 94

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L  + +   +  +T    +++      D+++S   + +  + R    Q+      
Sbjct: 95  SVRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSDELVSS--QITDYLERVINPQLFTVNGV 152

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      +   L    DPS++  +  T + +       N           F+  +    
Sbjct: 153 SKVDLYGGMKYALRVWLDPSKMAAVDLTASDVMSVLNANNYQSATGQATGEFVLYNGSAD 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V +  E+                     ++                 +    +  +  
Sbjct: 213 TQVSNVEELE--------------------NLVVRSGEGEIIRLSDIAKVSLEKSHDVYR 252

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                     A  +     +          L   L           V   +  A   S  
Sbjct: 253 ASANGQEAVVAAINAAPSANPINIAADVLELLPQLEKNLPSNISMNVMYDSTIAINESIQ 312

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A +VL+V+ + +   +  L+   +I L++I    ++  +G +  L ++  +
Sbjct: 313 EVIKTILEAALIVLVVITLFLGSFRAVLIPIVTIPLSLIGVAMVMQAMGFSWNLMTLLAM 372

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +    +  +S F +  +G       +    +T       +   
Sbjct: 373 VLAIGLVVDDAIVVLENVDRHIKLGESPFRAAIIGTREIAVPVIAMTLTLGAVYAPIAMM 432

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFF 532
           G   G   + FA+T+  S+ +S   A+++   M   +        K  + +         
Sbjct: 433 GGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKAHAEPSKFEQKVHSVLDGMTN 492

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +         +     I+F+   +   F        + KG I L   A    +L 
Sbjct: 493 RYERMLGAVMNHRPVFIGFAVIVFASLPMLFKFIPSELAPSEDKGVIMLMGTAPSNANLD 552

Query: 593 VVRSNLESLQ 602
            +++ +  + 
Sbjct: 553 FMQNTMNDVN 562



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 82/235 (34%), Gaps = 7/235 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + LS +                   E            + +     +  +  ++ + +
Sbjct: 232 EIIRLSDIAKVSLEKSHDVYRASANGQEAVVAAINAAPSANPINIAADVLELLPQLEKNL 291

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I++ I  ++ +A+ +L+ I +    +   L  I T+ L + 
Sbjct: 292 PSNISMNVMYDSTIAINESIQEVIKTILEAALIVLVVITLFLGSFRAVLIPIVTIPLSLI 351

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                    G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 352 GVAMVMQAMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKLGESPFRAAIIGT 408

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            E     +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++ 
Sbjct: 409 REIAVPVIAMTLTLGAVYAPIAMMGGITGSLFKEFALTLAGSVFVSGIVALTLSP 463



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 68/183 (37%), Gaps = 7/183 (3%)

Query: 652 QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
            N + +G           +     ++   + + + I+F+     L  + ++ L I   L 
Sbjct: 811 YNHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVPLAICGALI 870

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             A      N+ +   ++TL+G      +++ +  ++    +  +    + + ++    L
Sbjct: 871 ALAWGAATMNIYSQVGLITLVGLITKHGILICEVAKEEQLHHHKTR--IEAVMEAAKVRL 928

Query: 770 GRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDW 826
              + T+ A    ++P+    G      F+I +    G+ +    ++F+   I  ++ + 
Sbjct: 929 RPILMTTAAMIAGLIPLMYASGAGAAQRFSIGIVIVAGLAIGTIFTLFVLPVIYSYLAEK 988

Query: 827 RAK 829
              
Sbjct: 989 HKP 991


>gi|28199288|ref|NP_779602.1| acriflavin resistance protein [Xylella fastidiosa Temecula1]
 gi|182682015|ref|YP_001830175.1| acriflavin resistance protein [Xylella fastidiosa M23]
 gi|28057394|gb|AAO29251.1| acriflavin resistance protein [Xylella fastidiosa Temecula1]
 gi|182632125|gb|ACB92901.1| acriflavin resistance protein [Xylella fastidiosa M23]
 gi|307578278|gb|ADN62247.1| acriflavin resistance protein [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 1032

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 65/588 (11%), Positives = 155/588 (26%), Gaps = 46/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  +GL+  L   +      + P                     +E  
Sbjct: 9   KRPIGTSLLAIGVFVLGLICYLQLSVAPLPKFQIPVIF------------------VEAS 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +       +   +    +     +        S  +  + + L F  +R  ++ A  V  
Sbjct: 51  QAGADASTMASTVTAPLERYLGQIPGIKRMRSSSSESNSNVFLLFQSNRNIDSAAQDVQA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L               +  I+      D     A              +   
Sbjct: 111 AINAAQADLPSGLLPPSYKKANPNDDPIIALALTSDTQSMDA--LYNVADSLLAQHLRQI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +  + D   L  L  T  ++       N +    +          
Sbjct: 169 QGISSVDIVGASTPAVRVDVDMHALNALGLTMDQLQNAVRAANVTSPTGLLSNDTRTTEI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    +                       +   +   R         +       
Sbjct: 229 LLNSTISKAAD-------------------FAQLVIATQPNGRIVRLSDIAQVYDGQQDA 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +   T++        LR       +      +      
Sbjct: 270 YQAAWFNHKRAVVMYVFLRTGANVVETVDRVKAELPALRTYLPSGTVITPYFDHTPTIRA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T  I   +V++ + + +      ++A  ++ L++     ++  L  TL   ++
Sbjct: 330 SLYEIQTTLIISLAMVMLTMALFLRRLAPTIIAVATVPLSLAGAAIVMYALDFTLNNVTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +V+ IG  VD  I++ E I        S   +   G     STI    ++ ++     
Sbjct: 390 LALVIAIGFVVDDAIVMIENISRHLNTGMSPLEAALTGAREIGSTIVSITVSLVVVFAPF 449

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G   R F IT+  +I+ISM  ++++  A+    +    +        +    +
Sbjct: 450 LFDHGMIGTLFREFGITLVSAIIISMLVSLTLTPALCSRFLSAHVVPEKSNGIGAWLERM 509

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              I   +  A  + +  ++L ++  + L+    +  G   KG     
Sbjct: 510 YLRILRLYTVALDFSLRHALLLALTPLLLIVLTVMLAGAISKGTFPSQ 557



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 59/153 (38%), Gaps = 11/153 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +IIS   +++ + +  +     + A+ T+ L +              N   + A++  IG
Sbjct: 338 LIISLAMVMLTMALFLRRLAPTIIAVATVPLSLAGAAIVMYALDFTLNNVTLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA-FISVLPMAVWG 790
           + V+D +V+ + +    +   T +S  +       E     V  S+    + V    ++ 
Sbjct: 398 FVVDDAIVMIENI---SRHLNTGMSPLEAALTGAREIGSTIV--SITVSLVVVFAPFLFD 452

Query: 791 GSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
             +I      F I +   I+++   S+ +   +
Sbjct: 453 HGMIGTLFREFGITLVSAIIISMLVSLTLTPAL 485



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 78/249 (31%), Gaps = 11/249 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               + V ++ +   +  L    I   N     +    L        A+  +   +K    
Sbjct: 778  RNGKMVPITAIAHQVPGLNPPQIKHDNQYTTMDLSYNLSPGVSIGEAEAIIDATIKGLRL 837

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   I             L+   ++ V I          +       +  ++TL   
Sbjct: 838  PGDIRVAIAEDNDFTNDQMNILLLATLIAVYIVLG------MLYENLIHPITILSTLPAA 891

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L    L   E +  ++ A++ LIG    + +++ D     +      +     + +
Sbjct: 892  GMGALLALYLSHTELSAISMIALILLIGIVKKNAIMMID--FALVAQRERGLEPHAAVRE 949

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +        + TSM A ++ +P+A+    G  +     I M  G++++ S ++     + 
Sbjct: 950  ASIVRFRPIMMTSMVAILAAMPLAIGVGEGAELRRPLGIAMIGGLLISQSLTLLSTPALY 1009

Query: 821  LFIYDWRAK 829
            +       +
Sbjct: 1010 VIFSCLSQR 1018


>gi|332185884|ref|ZP_08387631.1| acrB/AcrD/AcrF family protein [Sphingomonas sp. S17]
 gi|332014242|gb|EGI56300.1| acrB/AcrD/AcrF family protein [Sphingomonas sp. S17]
          Length = 1025

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 71/520 (13%), Positives = 151/520 (29%), Gaps = 39/520 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  +G    +        +  +P       +                 
Sbjct: 9   RRPILSIVVSLLILLVGGASLV-----LLQVREYPEMQSATIV---------VDTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     +  +          +  Q +++I      +   +    +V   +Q 
Sbjct: 55  TQDVMQGFVTTPIAQAIATASGIEYLTSTSTQGRSQIKAKLVLNADADRSMTEVLAKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L       ++   T+    I       D +     + +  + R     I       
Sbjct: 115 VKFRLPPGATDPVITKITDGASEIQYVAFTSDTL--SIPQITDFVSRVAQPLITAVPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    DP +L     +   ++      N                 G   
Sbjct: 173 SANIMGGQTLAMRIWLDPDKLAARGLSADDVAQALRSNNVQSAP------------GQLK 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +  + I+          F          +                 +           
Sbjct: 221 GSDTAINITAASDLRNVGEFRD--------MVLKSAADGIVRLQDVATVELGGQNYDASA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +           +     +    ++    L   ++  + P    I +         S   
Sbjct: 273 LRNGHTTVYVAIAPTPDGNPLTIVKAVNDLLPRIQRVAPPGVTVINQFDVAHFVNASIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +V+IV+F+ +   +  ++   +I L++I T AL+   G +L L ++  +V
Sbjct: 333 VIHTLAEAIVIVVIVIFLFLGSLRAVIIPVVTIPLSLIGTAALMLAFGFSLNLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +  S F +   G       +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIEEGLSPFRAAIQGAREIVGPVIAMTITLAAVYTPIGLMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
              G   R FA T+  S+++S   A+++   M  +++  K
Sbjct: 453 GLTGALFREFAFTLAGSVIVSGMIALTLSPMMSRYLLNAK 492



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 61/152 (40%), Gaps = 6/152 (3%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +  + T+ L +  T      FG   NL  + A++  IG  V+D +VV + +
Sbjct: 350 LFLGSLRAVIIPVVTIPLSLIGTAALMLAFGFSLNLLTLLAMVLAIGLVVDDAIVVVENI 409

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +     +S      +   E +G  +  ++       P+ + G   G++   FA  +
Sbjct: 410 H---RHIEEGLSPFRAAIQGAREIVGPVIAMTITLAAVYTPIGLMGGLTGALFREFAFTL 466

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           A  ++V+   ++ ++  +  ++ + +    R+
Sbjct: 467 AGSVIVSGMIALTLSPMMSRYLLNAKLTEGRL 498



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/197 (12%), Positives = 66/197 (33%), Gaps = 10/197 (5%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +  ++ +           +           L     +    + + + + +  +F+ + 
Sbjct: 813  EAVAFLQAQPLPPGMTIDWLSDSRQYVHEGNRLT----ISFGFALVVIFLVLAAQFESFR 868

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + T+ L I   L    L     N+     ++TLIG      +++     +    +
Sbjct: 869  DPLVILVTVPLAICGALLPLYLGYATLNIYTQIGLVTLIGLISKHGILMVSFANE--IQH 926

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +     I K+    +   + T+ A    ++P+      G +   +  I +  G+++ 
Sbjct: 927  REGLDRIAAIRKAAAIRMRPVLMTTAAMVAGLVPLLFASGAGAASRFAIGIVVVMGMLIG 986

Query: 809  ASSSIFIAAPILLFIYD 825
               ++F+   I  F+  
Sbjct: 987  TLFTLFVLPTIYSFVAR 1003


>gi|239831897|ref|ZP_04680226.1| acriflavin resistance protein [Ochrobactrum intermedium LMG 3301]
 gi|239824164|gb|EEQ95732.1| acriflavin resistance protein [Ochrobactrum intermedium LMG 3301]
          Length = 1029

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 68/543 (12%), Positives = 148/543 (27%), Gaps = 39/543 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVALMIILLGL-----QGIAQLTVREYPKVDETVIT---------VTTTYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGANPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGDLPDESDDPVIVKGTGQNFATMY--LAAQNPNMTSEQITEYLERVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLAAIKASNFLSAPGTTKNEYVASSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +     G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKASGDDVVRLRDVARVELAAKSTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S   
Sbjct: 273 SFNGSAGTFLGVFPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSIKE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLRPIDAAFKGMKEITGSIIAMTITLAAVFAPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A+++   M   ++++             F       
Sbjct: 453 GLTGALFREFAFTLAGAVIISGIAALTVSPMMCARMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQ 541
             +
Sbjct: 513 HRR 515



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  +  ++       P+   G   G++   FA  +A
Sbjct: 411 ---RHIEEGLRPIDAAFKGMKEITGSIIAMTITLAAVFAPLGFTGGLTGALFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ ++ 
Sbjct: 468 GAVIISGIAALTVSP 482



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 65/161 (40%), Gaps = 6/161 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ I + + +  +F+ +      + ++ L I   +    +     N+     ++T
Sbjct: 849  LIAFGLAVIVIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLIT 908

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G      +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +
Sbjct: 909  LVGLITKHGILMVE--FANQQRRLHGLSRRDAIIVAAETRLRPILMTTAAMALGVVPLII 966

Query: 789  WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              G+      S  + +  GIV+    ++F+      FI   
Sbjct: 967  ATGAGAAARYSMGLVIFTGIVIGTIFTLFVVPMFYTFIAKK 1007


>gi|254503638|ref|ZP_05115789.1| RND transporter, HAE1/HME family, permease protein [Labrenzia
           alexandrii DFL-11]
 gi|222439709|gb|EEE46388.1| RND transporter, HAE1/HME family, permease protein [Labrenzia
           alexandrii DFL-11]
          Length = 1191

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 56/523 (10%), Positives = 134/523 (25%), Gaps = 42/523 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R    + +L   +   G++            +  P                   +  + 
Sbjct: 9   LRRPKTVFVLMLALLAAGVMT-----YVSIPKEDSPDIDLPIFY---------ISITQQG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              +     L    +     L           +    I L F  S  K+     V   + 
Sbjct: 55  ISPEDAERLLVRPMETELRGLDGLKEITAIASESHAGIVLEFDISFDKDEALADVRDKVD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  D ++  +          +    + +       + +    R+  DQI   ++ 
Sbjct: 115 QAKGELPADAEEPTITEMNFALAPTMFVALSGNVPERTLYQHA----RRLKDQIEAVDTV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      L    D  +L     T  ++       N             R +    
Sbjct: 171 RSADLSGHREELLEVLIDTQKLESYAITQQELLNTLTANNQLVPAGFIDGGKGRFNVKVP 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L+E+  ++                      +   + G           I +        
Sbjct: 231 GLIENAADV--------------------YSLPLKQSGEGVVTLADVAEIRRTFKDADSY 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + +   +          +               +             
Sbjct: 271 TRVNGKPAIALEVTKRIGTNIIENNAAVRAVVEEASKDWPETIQVDILLDQSDNIYEVLG 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +      LV+I++   +      L+   +I  + ++   +L  +G T+    + G+
Sbjct: 331 SLQSSILTAIFLVMILVLAALGMR-SALLVGLAIPTSFMVGFLILGGIGYTVNTMVMFGL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +GL VD  I++ E    +  +      +        +  I  S  T L+A + +  +
Sbjct: 390 VLTVGLLVDGAIVMTEYADRKVHEGMEDREAYIRAAKLMFWPIVSSTATTLVAFLPMLLW 449

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               G  +    I + + +  S+ TA+  +      +      
Sbjct: 450 PGVAGEFMSYLPIMVIIVLAASLVTAMVFLPVTGGVLADVSHW 492



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 78/234 (33%), Gaps = 10/234 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVP 647
            D++ +R   +                    R+     ++ A    V+E   K   E + 
Sbjct: 255 ADVAEIRRTFKDADSYTRVNGKPAIALEVTKRIGTNIIENNAAVRAVVEEASKDWPETIQ 314

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
           +  + +      ++   L    +  + +  I +L  + +R      L   T+ ++     
Sbjct: 315 VDILLDQSDNIYEVLGSLQSSILTAIFLVMILVLAALGMRSALLVGLAIPTSFMVGFLIL 374

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G     G   N   +  ++  +G  V+  +V+ +      +     +  R+   ++   
Sbjct: 375 GGI----GYTVNTMVMFGLVLTVGLLVDGAIVMTE---YADRKVHEGMEDREAYIRAAKL 427

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI--PMAFGIVVAASSSIFIAAPI 819
                V ++    ++ LPM +W G      +    M   ++ A+  +  +  P+
Sbjct: 428 MFWPIVSSTATTLVAFLPMLLWPGVAGEFMSYLPIMVIIVLAASLVTAMVFLPV 481



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 85/234 (36%), Gaps = 21/234 (8%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                 DG  + +V+    P         +  ++K +        +        +  +E  
Sbjct: 891  EIVRRDGLYSMMVKATVNPASGSTPDEQVGELEKWLDAQTWPDNVYLQFRGADEDQKESG 950

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVA 724
               +  ++ S   M + +  ++  +Y     ++T++L +   L    + G +F++     
Sbjct: 951  EFLMKAMVGSLFLMFLILLTQYNSFYQTFLTLSTVVLSVFGVLLGMMVTGQKFSIIMTGT 1010

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ L G  VN+ +V+ D      +     +   + I K+  + +   + T++     ++
Sbjct: 1011 GVVALAGIVVNNAIVLIDTYN---RFIDDGLDPLEAILKTSAQRIRPILLTTITTIAGLI 1067

Query: 785  PMA------------VWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            PMA             +GG         +  +  G+  +   ++ I  P+++ +
Sbjct: 1068 PMATQINFDFANQVTAYGGITAVWWVQLSTAVISGLAFSTILTL-IMIPVMIAL 1120


>gi|84624151|ref|YP_451523.1| putative transport protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84368091|dbj|BAE69249.1| putative transport protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 823

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 84/646 (13%), Positives = 184/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATTDGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V      D ++  +   +  +  ++         ++ A +      R+   +I      
Sbjct: 115 AVRDDFPEDLQRFHVFKWSSSDEPVLKVLLASQTDLTGAYDMLD---REFKRRIERIPGM 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S                         N 
Sbjct: 172 AKVKISGAPPNEVEIAIAPDRLTAHDLSLNDLSERL-------------------GKLNF 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +   +++ +G  +            +    +      A+         +      +  G
Sbjct: 213 SVSAGQIDDNGQRIRVQPIGELRDLQELRELVL----NAKGVRLGDIAEVRLKPMRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +     + A      + A      + +    N       S 
Sbjct: 269 RRLDGCPAIGLDVYKERSANLVEVSKAALKEVEDICAQPAMRDVQVKVIDNQGKTVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + S+ G
Sbjct: 329 AELAEGGAVGLLLSITVLFFFLRHWPSTLMVALAIPICFAITLGFMYFVGVTLNILSMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPDQPQLAALLGTRSVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     + S            
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTSEPGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G D      +            +
Sbjct: 509 AKVLAWTLAHRGWSVAGIILVSAISLVPMTLTKIDMFGGDGGNEAFIQYRWKGSYTREQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +                G +   T     VK 
Sbjct: 569 GDEIGRVENYLEANRAKYHITQIYSWFSEVEGSNTVVTFDASKVKD 614



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+        +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDICAQPAMRDVQVKVIDNQGKTVTSSLAELAEGGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+ ++  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVALAIPICFAITLGFMYFVGVTLNILSMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPDQPQLA-----ALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|27379568|ref|NP_771097.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
 gi|27352720|dbj|BAC49722.1| AcrB/AcrD/AcrF family protein [Bradyrhizobium japonicum USDA 110]
          Length = 1049

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 64/624 (10%), Positives = 151/624 (24%), Gaps = 49/624 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L   +   GLL           +   P                   +   L 
Sbjct: 9   RRPIATSLLGIALLIGGLL-----GYFSLPVSALPQVDFPT-----------VQVTTQLP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +   +    +     +        +     ++I+L F  +R  +     V   +
Sbjct: 53  GASPDVIASLITAPLERQLGQIPSLSAMNSTSSFGVSQISLQFDLNRDIDGATQDVQAAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L                 + V++   +          S         ++     
Sbjct: 113 NAAAGVLPKTLPYPPTYAKVNPADAPVMT-LALRSDTISLRAMSDIADTLLAQRLSQISG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +      +   +  + D +RL         +       N S                 
Sbjct: 172 VGRVSVLGGLKPAVRIQADLARLAAYGIAMEDLRTAIANANVSGPKGSLDGAQQSYIIAA 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                       +    +                 I   L     
Sbjct: 232 NDQIAAA--------------------EAYKPVIIAYRNGSPVTIADVAQIVDGLENDRT 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G               +   +    +         ++          +          S 
Sbjct: 272 GGWYQGTPAVIIDIQRQPGANVIDVVSQIRAEIPKVQRAIPAGVNLTIVSDRTVTIRASV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              + T  +   LV +V+ + +   +  L+A  ++ L++I +  ++   G +L   S+  
Sbjct: 332 RDVQFTLILSVVLVTLVVLLFLRSLRATLIAGVALPLSLIASFGIMYFAGFSLDNLSLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + +G G  VD  I++ E I            +   G S    T+    ++ +   + L F
Sbjct: 392 LTIGTGFVVDDAIVMIENIVRHMENGDGPMEASLKGASEIGFTVISLTVSLIAVFIPLLF 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDINPLS 529
                G   R FA+T+ ++++ S   ++++   M   ++R+         + +I      
Sbjct: 452 MSGLVGRMFREFALTLTIAVVTSAVVSLTLTPMMCSRLLRHAHEEVAVPGLAAISRFIDR 511

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +     R R   V          +  +        +     I     A   V
Sbjct: 512 TVEFYHRTLLWVLERQRATLVVTFATLIATLVLYVVAPKGFLPLQDTASITAVTEAGPDV 571

Query: 590 DLSVVRSNLESLQIGDISFQNFDG 613
             + ++           +  +  G
Sbjct: 572 SFAEMQRRQAEAADAIKADPDVVG 595



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSLRATLIAGVALPLSLIASFGIMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++         +   K  +E     +  +++     +P+    G V      FA+ +   
Sbjct: 411 VRHMENGDGPMEASLKGASEIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAA 817
           +V +A  S+ +  
Sbjct: 471 VVTSAVVSLTLTP 483



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 70/191 (36%), Gaps = 4/191 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + L +      A    +E VK   T I   ++I            + +      ++ + I
Sbjct: 814  ISLSFNLAPGAALGDAVEAVKTIETRIEMPNSIVGVYAGDAAEFAKALAGQPWLLLAAVI 873

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + I + + ++ +   +  ++TL       +    L G + ++  +  ++ L+G    + 
Sbjct: 874  TIYIVLGVLYESYIHPITILSTLPSAGVGAILALVLCGQDLSVIGLIGIILLMGIVKKNA 933

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
            +++ D   +        +S  + I ++        + T++AA    LP+A+         
Sbjct: 934  IMMIDFALE--AERGQGMSPNEAIVQACLLRFRPIMMTTLAALFGALPLAI-ESGTGAEL 990

Query: 798  AIPMAFGIVVA 808
              P+   I+  
Sbjct: 991  RFPLGISIIGG 1001


>gi|327481867|gb|AEA85177.1| multidrug efflux protein [Pseudomonas stutzeri DSM 4166]
          Length = 1018

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 67/528 (12%), Positives = 159/528 (30%), Gaps = 47/528 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G+            + ++P                   + +   
Sbjct: 9   RRPVLASVISLLIVLLGI-----QAFNSLTIRQYPQMESAL-------------ITVTTA 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  +  +         +Q  + I++        + +  ++  
Sbjct: 51  YPGANAETIQGYITQPLQQSLASAEGVDYMTSVSQQNASVISVYARIGADTDRLYTELLS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               V ++L  D +  +L        +++      DQ+ +   + +  + R    ++   
Sbjct: 111 QANSVKNQLPQDAEDPVLNKQAADSTALMYISFYSDQLSN--PQITDYLSRVIQPKLATL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +       +  +    DP +L     +   ++      N          +++  S 
Sbjct: 169 PGMAEAEILGNQVFAMRLWLDPVKLAAYGVSAGDVNEAVRKYNFLSAAGEVKGQYVVTSI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                ++                      +    I     G  R        +       
Sbjct: 229 NADTELKTP--------------------EAFAAIPLKTQGDSRVLLGDVARVEMGAESY 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                            G    +    I+    +   + A   P     +          
Sbjct: 269 NSISSFDGIPSVYIGIKGTPSANPLDVIKEVRAIMPQIEAQLPPGLKATIAYDATEFIQA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A  A +V++V+F+ +   +  L+   +I L++I  L  +  +G ++ L ++
Sbjct: 329 SIDEVVKTLAEAAVIVIVVVFLFLGSLRTVLIPVVTIPLSMIGVLFFMQAMGYSINLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E I     + +S F +   G       +    IT       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENIHRHIEQGKSPFQAALDGAREIAMPVVSMTITLAAVYAPI 448

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            F     G   + FA+T+  ++LIS   A+++   M   ++R+++  S
Sbjct: 449 GFLQGLTGALFQEFALTLAGAVLISGVVALTLSPMMCSKLLRHEENPS 496



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 61/156 (39%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L +   L    L     N+     ++TLIG 
Sbjct: 851  ALALAVIFLVLAAQFESFRDPLVILVTVPLSVCGALVPLFLGLSSMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N       +S R+ ++++    L   + T+ A    ++P+ +    
Sbjct: 911  ISKHGIMIVE--FANQLRRERGLSRREAVEEAAAIRLRPVLMTTAATVFGMVPLIIASGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +A G+ V    ++F+   +   +  
Sbjct: 969  GAVSRFDIGLVIATGMSVGTLFTLFVLPAVYELLAR 1004



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  + T+ L +   L F    G   NL  + A++  IG  V+D +VV + +    
Sbjct: 354 SLRTVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH--- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      S          E     V  ++       P+       G++   FA+ +A  +
Sbjct: 411 RHIEQGKSPFQAALDGAREIAMPVVSMTITLAAVYAPIGFLQGLTGALFQEFALTLAGAV 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           +++   ++ ++  +   +       +
Sbjct: 471 LISGVVALTLSPMMCSKLLRHEENPS 496


>gi|148241498|ref|YP_001226655.1| RND family multidrug efflux protein [Synechococcus sp. RCC307]
 gi|147849808|emb|CAK27302.1| Multidrug efflux transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1)
           family (2.A.6.2.) , RND superfamily [Synechococcus sp.
           RCC307]
          Length = 1097

 Score =  144 bits (362), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 73/580 (12%), Positives = 156/580 (26%), Gaps = 28/580 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   +I   GL+      LP   ++  P+  P               + +  +
Sbjct: 9   RRPVLSTVCSILILMAGLIS-----LPLLPIENLPNIAPPT-------------VQVSAN 50

Query: 62  EDDFVNGFLQMYSD-ELRSFLKK----EGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                   ++      L   +      + I   S  +  ++I++ F  +   +     V 
Sbjct: 51  LPGADAVTVESAVTGPLEEQINGAPGMDYITSSSTSEGSSQISVYFQANTNADIDQVNVL 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q    +L        +         +++      +    A   +          +  
Sbjct: 111 NRVQTATPQLPQQVSAQGITVQQTSSSILLVYNLTSTEGQYDASYLNGLYQLNLAYPLAR 170

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           ++   Q               DP +L +   +   +       N    G   G       
Sbjct: 171 AQGVGQVNVYGASNPAYRLWVDPEKLTRFNLSVMDVIDALEAQNQIVVGGTIGGPPAPQG 230

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               + +     +    +         +           +    R  +V R         
Sbjct: 231 TTTTFPILVDGNL--ETVQEFENLILARGGAGQATARGPDGSLIRLGDVGRAEYAFQNFN 288

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +T               +   T +    +    R+   P               
Sbjct: 289 TAGINGITGHPCIGFGVVQLPGSNAISTAKAVEKVLDQFRSTLPPGVQLEKVFDQTDFIN 348

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S             LVL+++F+ +   K  +V   ++ + ++  L  + + G ++   +
Sbjct: 349 ASIYGALDALRDAVVLVLLIIFLFLQDWKVTMVPALALPIALLGALVFVKVFGFSINELT 408

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + GI+L  GL VD  I+V E +          F +           I  + +  +   V 
Sbjct: 409 LLGIILATGLVVDDAIVVVEAVAARIEAGDKPFAAASNAMKELTGAILATALVLMAVFVP 468

Query: 477 LFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + FF G      R FA+T+  SI++S F AIS        ++   K +      L    +
Sbjct: 469 VTFFPGATGVIYRQFALTIVFSIIVSTFNAISGKPLQSALLLGGGKTEVGGRRWLWIGAI 528

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
                   F    +  +   +   I           N G 
Sbjct: 529 FGGVYGFLFGGVLWLLLFAGLGALIGGNLKSIFQRFNQGF 568



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 53/138 (38%), Gaps = 6/138 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  + T+ L I   L F  L G   N+ A   ++TLIG +  + +++ D      +   
Sbjct: 946  PLVILMTVPLAILGALIFLVLRGQVNNVYAQVGLVTLIGLAAKNGILIVDMAN---QRME 1002

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFGIVVAA 809
              +   +    +    L   + T+ AA     P+ V  G   +   S    +  G++VA 
Sbjct: 1003 AGMDVIEAASSAAQSRLRPILMTAAAALSGFFPLVVASGAGALSQRSIGAVIFGGLLVAT 1062

Query: 810  SSSIFIAAPILLFIYDWR 827
              S+F+     + +    
Sbjct: 1063 VLSLFVVPAFYVLMKKLE 1080



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/128 (17%), Positives = 48/128 (37%), Gaps = 6/128 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +     L + +   L F  +FG   N   +  ++   G  V+D +VV +      
Sbjct: 375 DWKVTMVPALALPIALLGALVFVKVFGFSINELTLLGIILATGLVVDDAIVVVE---AVA 431

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                          ++ E  G  + T++      +P+  + G+       FA+ + F I
Sbjct: 432 ARIEAGDKPFAAASNAMKELTGAILATALVLMAVFVPVTFFPGATGVIYRQFALTIVFSI 491

Query: 806 VVAASSSI 813
           +V+  ++I
Sbjct: 492 IVSTFNAI 499


>gi|254432092|ref|ZP_05045795.1| protein-export membrane protein SecF [Cyanobium sp. PCC 7001]
 gi|197626545|gb|EDY39104.1| protein-export membrane protein SecF [Cyanobium sp. PCC 7001]
          Length = 320

 Score =  144 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 66/216 (30%), Positives = 113/216 (52%), Gaps = 7/216 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +    V L+     +     V+E +   I    P     + E +GP +   L+R  ++ +
Sbjct: 107 DGGQQVVLRLPSLSAEQGQAVVEGLAPVIGPTDP--AGLSVETIGPTLGSRLLRASLISL 164

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI----EFNLTAVAAVLTL 729
            +S + +  YI IR+   FAL A+  L  D+  T G F+  G+    E N     A+LT+
Sbjct: 165 AVSFVGISAYITIRYDRLFALLALLCLGHDVLITCGVFSWLGLLGGVEVNSLFAVALLTI 224

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            GYSVND VV++DR+R+  ++  T ++  +  D ++  TL RS+YTS    + +L + ++
Sbjct: 225 AGYSVNDTVVIFDRIREK-RVQLTELALSEQADAAVAATLTRSLYTSFTTLLPLLALILF 283

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           GGS +  FA+ ++ G+VV A SS+ IA  +L  +  
Sbjct: 284 GGSTLFWFAVALSVGVVVGAWSSVAIAPTLLPVLAR 319


>gi|114047203|ref|YP_737753.1| acriflavin resistance protein [Shewanella sp. MR-7]
 gi|113888645|gb|ABI42696.1| acriflavin resistance protein [Shewanella sp. MR-7]
          Length = 1087

 Score =  144 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 67/513 (13%), Positives = 144/513 (28%), Gaps = 41/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    I   G++        +  +   P                    + +  
Sbjct: 9   KRPVTVWMFMLAIMLFGMV-----GFSRLAVKLLPDLSYPTLT---------IRTLYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 55  APVEVEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISEST 180
           +   L +D KK LL+        I+    ++       ++Q       +   ++      
Sbjct: 115 I--ALPLDVKKPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++  + +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQEVHIQLNQEKLSQLNLNADDIKRRIYEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I G             + + +  +                 I        D 
Sbjct: 213 INLSAGKVIQGDREYLVRTLNQFNSLEELGQVIVYRDAQTLVRLFEVATITDAFKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +        +           V          + S
Sbjct: 273 TRIGSQESIELAIYKEGDANTVAVAKKLRDELVKINQ-DPKQNKLEVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  + + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALMGSILSMLVIYLFLRNIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L IGL VD+ I+V E I     +  S   +   G       IF S +T L   V L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRCRSEGMSKLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFV 451

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
               G      A+T+  ++L S+  A++ +  +
Sbjct: 452 DGIAGALFSDQALTVTFALLASLLVALTSIPML 484



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 74/222 (33%), Gaps = 3/222 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + +   A   V L  V +  ++ +      +    E   L   +    ++VA  + L 
Sbjct: 242 GQVIVYRDAQTLVRLFEVATITDAFKERSDITRIGSQESIELAIYKEGDANTVAVAKKLR 301

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               KI +    + ++        I   +       ++ S ++ML+           L  
Sbjct: 302 DELVKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSILSMLVIYLFLRNIIPTLII 361

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  +S
Sbjct: 362 SISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRCRSEGMS 418

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
             D       E  G    ++M      +P+    G     F+
Sbjct: 419 KLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFS 460



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 87/217 (40%), Gaps = 8/217 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V L          +  +   ++ ++  V  +++Q       +      +   + +I+
Sbjct: 856  QQRVALVSANLAYGDLSDAVAEAQQILSAQVLPASVQARFGGQNEEMEHSFQSLKIALIL 915

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    +     ++     ++ L G  V
Sbjct: 916  AVFLVYLVMASQFESLLHPLLILFAVPMALAGSVLGLYITQTHLSVVVFIGLIMLAGIVV 975

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+    +L T  +   + I  +    L   + T++   + +LPMA+    G 
Sbjct: 976  NNAIVLVDRIN---QLRTEGVDKLEAIKVAAKSRLRPIMMTTLTTTLGLLPMALGLGDGS 1032

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             V    AI + FG+ + ++    I  P+L  ++D + 
Sbjct: 1033 EVRAPMAITVIFGLSL-STLLTLIVIPVLYALFDRKK 1068


>gi|262184225|ref|ZP_06043646.1| preprotein translocase subunit SecD [Corynebacterium aurimucosum
           ATCC 700975]
          Length = 597

 Score =  144 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 105/569 (18%), Positives = 197/569 (34%), Gaps = 62/569 (10%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +    L++ +   L     D+ P         LG+DL+GG+ + L    +D     LQ  
Sbjct: 1   MALFALIVIVVYALIFLTGDKSP------TPKLGIDLQGGTRVTLVPQGEDPTQEQLQQA 54

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSR--FKENIADKVTLFLQGVNSKLNVDPK 131
              L   +   G+    +    + + ++         + +     L  + V  +   D  
Sbjct: 55  RTILEQRVNGMGVSGSEVVISGSSLVITVPGEDASQAQAVGQTSQLLFRPVGEQPMPDMD 114

Query: 132 KNLLVTTTEKE---------------------ISIVLSQNNIDQVISHAIEQSMEIIRQR 170
                 T                          ++  S            E+        
Sbjct: 115 TLEKTMTDMANRWVKYGVVTPEHANQSLASIHEALNQSAGAAQGGDQKDKEKDDNSPAPT 174

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM----SFHKVLPNNSKKGF 226
           + +  + +       + R            +       TA +       +  P       
Sbjct: 175 VSEKPLPDPANSLEETERRDKVTEVLLKDRQSEDPTVQTAALGLMTCDAESDPLAGTDDP 234

Query: 227 MFGVRFLRDSDGNQYLVE-----------DKVEISGIHLNGATA-------NFDPKTHKP 268
              +     S+   Y++            +   ++G  ++                    
Sbjct: 235 AKPLVACDYSNQQPYILNPAPLLDGIDDPNGTRLTGNEIDNNAPIQGGLNSQTGQMEINF 294

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQISGNFTIET 327
                    G++ +  +T++ + K +A+ LD  V++APVI  A        I+G+FT E 
Sbjct: 295 AFKTGDGPNGSQTWATLTQEYLQKQVAITLDSAVISAPVIQGATPVGSATSITGDFTQEE 354

Query: 328 AGILAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
           A  LA  LR G+LP+               V   LG  ++     A + GL+L+ L+ I 
Sbjct: 355 AQNLANNLRYGALPLSFTGANGEPGGTVETVPPSLGKAALEAALIAGIVGLILVSLYSIY 414

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNER 437
            +     VA   +    +L    L LL    G +L L  +AG+V+GIG   DS ++  ER
Sbjct: 415 YFRALSSVALLVLIATCVLLYGALVLLGRWIGYSLDLSGMAGLVIGIGATADSFVVYYER 474

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           +++E    ++   +   G+ R+ +TI       LI +VV++F   GAV+GFA TMGL+ +
Sbjct: 475 MKDELLSGRTFRSATRTGWERSRATIVTGKAVTLIGSVVVYFLSIGAVKGFAFTMGLTTI 534

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             +  +  I+  +M  +          +N
Sbjct: 535 FDLVVSFLIMAPLMQLLGSRPAFAKPSMN 563



 Score =  108 bits (268), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 74/267 (27%), Gaps = 8/267 (2%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +                  +          +  +   +    I      G    +     
Sbjct: 292 INFAFKTGDGPNGSQTWATLTQEYLQKQVAITLDSAVISAPVIQGATPVGSATSITGDFT 351

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
           Q         +                    E V P + +  +   ++  I+  I + +Y
Sbjct: 352 QEEAQNLANNLRYGALPLSFTGANGEPGGTVETVPPSLGKAALEAALIAGIVGLILVSLY 411

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVV 739
               F+   ++  +  LI       G   L G       +L+ +A ++  IG + +  VV
Sbjct: 412 SIYYFRALSSVALLV-LIATCVLLYGALVLLGRWIGYSLDLSGMAGLVIGIGATADSFVV 470

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
            Y+RM+  +    +  +FR         +    V       I  + +       +  FA 
Sbjct: 471 YYERMKDELL---SGRTFRSATRTGWERSRATIVTGKAVTLIGSVVVYFLSIGAVKGFAF 527

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDW 826
            M    +     S  I AP++  +   
Sbjct: 528 TMGLTTIFDLVVSFLIMAPLMQLLGSR 554


>gi|255033856|ref|YP_003084477.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
 gi|254946612|gb|ACT91312.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Dyadobacter fermentans DSM 18053]
          Length = 1055

 Score =  144 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 75/694 (10%), Positives = 184/694 (26%), Gaps = 52/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++   ++  +GL+      L    + ++P   P               + +  +
Sbjct: 8   KRPVTAIVSSVVLVLVGLIA-----LTTLPVAQYPDVTPPT-------------VTVSGN 49

Query: 62  EDDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQNK---ITLSFADSRFKENIADKVT 116
                   ++  +   + + +    G+   S     +    I + F         A  V 
Sbjct: 50  FTGADAQTVEQTTTTPIETQINGVPGMTYMSSNSTSSGQSSINVVFDVGTDVNIAALDVQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +      L    K+  L     +   ++            A            D +  
Sbjct: 110 NRVSVAEPTLPDAVKRLGLTVRKRQPSIMIALALYSPNGTHDAQFIGNYANIYLKDALQR 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +       S      +    +P +L  L  T + +S      N        G      +
Sbjct: 170 VKGVGDI-VSRADDFGMRIWLNPEKLANLRMTPSDISAALAEQNLQIAAGTVGGTPQPGA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              +Y V     ++                   + +          +      +      
Sbjct: 229 QAFEYSVLTNSRLNTKEQFEN------------IIVRSAPEEGSVVYLRDVARVELGKFD 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +        +       +   T E        ++         ++         
Sbjct: 277 YGVNAFVAGKPAAFVLIYQAPDANALDTYEGVMKALTEMKKTFPKDIDYVIPVETASVVK 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T      LV++V+F+ +   +  L+   +I +++I T       G T+   +
Sbjct: 337 VSIEEVLHTFGEAMILVVLVVFLFLQNWRATLIPILAIPVSLIGTFIFFIPFGFTINTLT 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR--AYSTIFDSNITALIAT 474
           +   VL IG+ VD  I+V E ++    + +    +      +  +   I  + I A +  
Sbjct: 397 LFAFVLAIGIVVDDAIVVVEAVQHYIDEKKMSPRAATEQAMKDISGPVIAIALILAAVFV 456

Query: 475 VVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------------KKM 520
            V F  G  G   + FAIT+ +S+L+S F A+S+  A+   ++R             K  
Sbjct: 457 PVGFVPGIVGRLYQQFAITIAVSVLLSAFVALSLTPALCSIMLRPSKGENDKKNALEKFF 516

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
              +             ++          V +  LF                ++ +G + 
Sbjct: 517 DRFNRWFDKVSRSYTRGVSKWIKATPLVLVMMVCLFVGLFFLFKNKPSGFIPVEDEGRLF 576

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +          +   + ++ +     +                   +      +   +  
Sbjct: 577 VTYEMQEATSTTRNVAMIKDIMGRVSAIPEVKVVGGLAGLNVISFSNKSNVGTMFVSLHP 636

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                     +Q       K + ++    ++ + 
Sbjct: 637 WADRKGAEHHVQAVIKEIQKRTADIKEARVLAIA 670



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 66/170 (38%), Gaps = 8/170 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVA 724
               +    IS + + +++   ++ W      +  + I      L    L  +  N+ A  
Sbjct: 874  DSTVTIFAISIVFVFLFLAALYESWSIPFSVLFAVPIGAFGSILTLTFLPDLSNNIYAQI 933

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++TLIG +  + +++ +  ++        +       +++   L   + TS+A  + VL
Sbjct: 934  GLITLIGLAAKNAILIVEFAKE---RVDNGMELVKATLEAVQLRLRPIIMTSLAFILGVL 990

Query: 785  PMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+A   G       +    +  G++ A S +IF+   + + I     K  
Sbjct: 991  PLAFASGAAAESRKTIGWTVFGGMIAATSLAIFVVPVLFVAIEKLVTKKG 1040



 Score = 42.0 bits (96), Expect = 0.40,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L  I  + + +  T  FF  FG   N   + A +  IG  V+D +VV + +     
Sbjct: 364 WRATLIPILAIPVSLIGTFIFFIPFGFTINTLTLFAFVLAIGIVVDDAIVVVEAV--QHY 421

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
           +    +S R   ++++ +  G  +  ++      +P+    G V      FAI     I 
Sbjct: 422 IDEKKMSPRAATEQAMKDISGPVIAIALILAAVFVPVGFVPGIVGRLYQQFAIT----IA 477

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           V+   S F+A  +   +     + ++
Sbjct: 478 VSVLLSAFVALSLTPALCSIMLRPSK 503


>gi|169832238|ref|YP_001718220.1| acriflavin resistance protein [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169639082|gb|ACA60588.1| acriflavin resistance protein [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 1043

 Score =  144 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 64/616 (10%), Positives = 174/616 (28%), Gaps = 53/616 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    +++L   +  +G++      L +  +D  P+                     +  
Sbjct: 9   RRPVGVIMLALAVLLLGMVS-----LSRLAIDLLPNWEFPVV---------SIVTTYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + ++         +   + +   F      E + + +   +  
Sbjct: 55  GPQEVEQLVTRPIEESVATVENLKNISSVSQSGSSVVIAQFDWGTDMEAVINDIREKVDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++++++      + +++     +Q      + +         ++       
Sbjct: 115 VQRVLPADAERSMVMKFDPAALPVLIVGFTGEQ---SLADLTRIAENTVKPRLERLPGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    DP  +R    +   ++      N +  G                
Sbjct: 172 SVAVQGGREREIQVYLDPVAMRGYGVSLENVTRSLQAGNLNMPGGTVPEGSREYLVRVPG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D  +I G                    ++               ++           
Sbjct: 232 EFADLRDIEG--------------------VTVPNADGEPVRLADIADLRDGYRETDVIS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +   + Q +    ++ A    A +                      S   
Sbjct: 272 RLNGQPSLAIVVMKQPQANTVQVVQAARETLAGIEKEIPGTISFEPAFDQAEFIEMSIGN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    + + L  +V+F+ +   +  L+   +I L +I    ++   G TL L ++  + 
Sbjct: 332 LRNDLLVGSFLAAVVIFIFLRNSRTTLIICATIPLAIIGACNMIYFSGETLNLLTLGALA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LG+G+ VD  I+V E I    ++      +   G +     +  ++ T++   + + F G
Sbjct: 392 LGVGVIVDDAIVVLENIYRHRQEGLDSLAAARTGAAEVTGAVLGASFTSMSVFLPIAFVG 451

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-------------KKMKSIDI 525
           G        F++T+  ++L S+  A+++V  +   ++               + +     
Sbjct: 452 GMASVLFTPFSLTVVFALLSSLIMALTVVPMLGSRLLVRLPDEPRPDGSRLSRLLYRFGS 511

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +A      R      + +F      +       +    +G + + V  
Sbjct: 512 GLERLKVFYGRLLAWSLDNRRKVVGLAAAVFIGSLALIPLVGAEFFPAMDEGTVSVEVEM 571

Query: 586 NRPVDLSVVRSNLESL 601
            R   +         +
Sbjct: 572 PRGTAVEATDRVAAQV 587



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 75/223 (33%), Gaps = 7/223 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +            +      V    +  +  +   S          +   E   +    +
Sbjct: 809  DDQARTVTISAQLEGRDLASVDRDARAALKGMALPSGYYFETGGEAEEMAETFAELAFAL 868

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ I + I + + F+  +F    +  + L +T  +    L    F++ A   V+  +G 
Sbjct: 869  LLAVILIYIVLAVLFESLFFPFVIMFAVPLSLTGMILGLLLTDRTFSMPAFIGVIVAVGI 928

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +V+ D +    +L    +   + I  +    L   + T++    ++ P+++    
Sbjct: 929  VSKNGIVLIDYVN---QLRRRGMERDEAIRTAGPVRLRPILMTTLTTVGAMFPISLGLGE 985

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G       A  +  G+V +   S+ +   +     DW     R
Sbjct: 986  GAEFQAPLATVIIGGLVFSTVISLLVVPVVYSIFDDWGRMVTR 1028



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/155 (20%), Positives = 58/155 (37%), Gaps = 7/155 (4%)

Query: 673 VIISAIAMLIYIWIR-FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           V     A++I+I++R  +    + A   L   I          G   NL  + A+   +G
Sbjct: 338 VGSFLAAVVIFIFLRNSRTTLIICATIPLA--IIGACNMIYFSGETLNLLTLGALALGVG 395

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV + +    +     +           E  G  +  S  +    LP+A  GG
Sbjct: 396 VIVDDAIVVLENI---YRHRQEGLDSLAAARTGAAEVTGAVLGASFTSMSVFLPIAFVGG 452

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                F  P +  +V A  SS+ +A  ++  +   
Sbjct: 453 MASVLF-TPFSLTVVFALLSSLIMALTVVPMLGSR 486


>gi|294010273|ref|YP_003543733.1| hydrophobic/amphiphilic exporter-1 [Sphingobium japonicum UT26S]
 gi|292673603|dbj|BAI95121.1| hydrophobic/amphiphilic exporter-1 [Sphingobium japonicum UT26S]
          Length = 1052

 Score =  144 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/663 (10%), Positives = 183/663 (27%), Gaps = 45/663 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+  +   GL+        +  +++ P                   +     
Sbjct: 12  RNPVPPIVLFVALLLAGLVS-----FSRMDVNQNPDVSFPMA---------SVVVRQPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +         + + Q+   + F      +   + V   +  
Sbjct: 58  APTELETQVTQRVEAAVRGISGVDEITSWVSEGQSNTNVQFQIGTPVDRAVNDVKNAVDQ 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L     +  +         I         +     E S  +      ++       
Sbjct: 118 IRSDLPEGILEPQVSRVDIDGGPIAYFSAEATDMTLE--ELSWYVDNTVAKRLLAVPGMA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    DP++L+    T ++++      N +  G    +     +     
Sbjct: 176 AVKRGGGVSREIRVILDPTKLQSHGITASQVNQQLQQVNLNAAGGRTEIAGAEQAIRVLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D   +    +                       G R        ++    A      
Sbjct: 236 NARDAYALGQTQIAI--------------------SGGRTVKLADLADVRDMYAEQRSLS 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++    +           S     + A  +   LR  +  ++       +V    G    
Sbjct: 276 LMNGRQVTSFSMEKAKGSSDVTVFDEAMKVLDQLRKENPKVQ-YKQLYTSVEYTKGQYHS 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+F+ +   +  +++  +I L+ I     + ++G TL   S+  + 
Sbjct: 335 AMQAMIEGAVLAVVVVFLFLRDWRATMISALAIPLSAIPAFWFMDMMGFTLNGISLLALS 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD  I+  E I    R  +S + +          A      + +   +   ++ 
Sbjct: 395 LVAGVLVDDAIVEIENIVRHMRMGKSAYQASIDAADEIGLAVLATTMAIVAVFLPVALMP 454

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+ +++L+S+  A  I   +  + ++    +S     +   ++     
Sbjct: 455 GISGQFFIQFGMTVVVAVLLSLAVARLITPMIAAYFLKAHGQESHGEGWMMDAYMAVLRW 514

Query: 539 AIQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           ++        RAR      +       I  +    L +         L +     +D   
Sbjct: 515 SLDERKAIAHRARGGMARFTAWLRDHRIWTMGMGFLAFVATIFAFGTLPMSFQPTIDTDF 574

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            +  +E++    +        K   +    +     A   +          +     I +
Sbjct: 575 SQVKIETVPGSTLQQTTAITRKVADMLAADKDMVEAAFADIQTTGADIFLTLKKDRPISS 634

Query: 654 TEI 656
            + 
Sbjct: 635 VQW 637



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   + +   + L       F  + G   N  ++ A+  + G  V+D +V  + +   
Sbjct: 355 RDWRATMISALAIPLSAIPAFWFMDMMGFTLNGISLLALSLVAGVLVDDAIVEIENI--- 411

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFG 804
           ++      S       + +E     + T+MA     LP+A+  G        F + +   
Sbjct: 412 VRHMRMGKSAYQASIDAADEIGLAVLATTMAIVAVFLPVALMPGISGQFFIQFGMTVVVA 471

Query: 805 IVVAASSSIFIAAPILLFIYD 825
           ++++ + +  I   I  +   
Sbjct: 472 VLLSLAVARLITPMIAAYFLK 492



 Score = 43.5 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 30/202 (14%), Positives = 74/202 (36%), Gaps = 7/202 (3%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            L      S A  ++  +   K      +  +Q       K   E+I+  ++ VI   + +
Sbjct: 817  LAPGIVTSQAMAKIDALPTMKAIAAGKILGVQKLNTGDSKWQAEMIQNFVIAVISGIMLV 876

Query: 681  LIYIWIRFKWYFALGAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            L  + + +K          +L+L          L G   ++  +  +L L+G    + ++
Sbjct: 877  LAVLTLLYKRLMPPFVNLGSLLLAPLGGALALHLTGNPVSMPVLIGLLMLLGIVAKNSIL 936

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWGGSVIG-S 796
            V D   + M      +   + I  + ++     V T++A    ++   +++ G       
Sbjct: 937  VIDFALEEM---GKGVPKLEAIIDAGHKRAQPIVMTTVAMVAGMVPTALSLGGDGAWRAP 993

Query: 797  FAIPMAFGIVVAASSSIFIAAP 818
              I +  G++++   ++ I   
Sbjct: 994  MGITVIGGLILSTVLTLVIVPA 1015


>gi|197105390|ref|YP_002130767.1| AcrB/AcrD/AcrF family protein [Phenylobacterium zucineum HLK1]
 gi|196478810|gb|ACG78338.1| AcrB/AcrD/AcrF family protein [Phenylobacterium zucineum HLK1]
          Length = 1081

 Score =  144 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 70/575 (12%), Positives = 164/575 (28%), Gaps = 46/575 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +   +  I  L     +L     +  P                  ++ + V         
Sbjct: 15  VVLGVTLIAALFGFFVYLN-MPRESEPDIDLP-------------YISVVVPYPGVSPED 60

Query: 70  LQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
            +       +     ++         R+    +TL F     K+   + V   +     K
Sbjct: 61  AERLLVKPLELELQTIQGIESMNAVARENLAIVTLEFEAKFDKDKALEDVRAKVDLARGK 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
              D ++ ++         ++    +              + R   +++  +   ++   
Sbjct: 121 FPPDAEEPIIQEANFSGEPVIGIVISGAAPEREL----HRVTRALKERLEATPGVLEVYM 176

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
           S      L    DP R+     TTA+++      N             + +     +VE+
Sbjct: 177 SGAREEVLEVTIDPVRMEAYNVTTAELAQVIGRNNQLVPAGSLRSGAGQFAVKVPGVVEE 236

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
             +I                    + +     G R        ++ +             
Sbjct: 237 PADI--------------------LTLPIKRNGDRLVTVGDIGDVRRTFKEAASISRYNG 276

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
                   S +   +   T+E    +A        P                +  + +  
Sbjct: 277 HPAFILEVSKRGGANILETVEVVKEVAVEESERWPPTIGIDYIYDESEFIGRTLVVLESG 336

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
             I   LV++++   +   + GL+   SI +  +L   +++ +G TL +  + G+VL +G
Sbjct: 337 LIIAIILVMLIIVASLGIRQ-GLMVGASIPVCFMLAFLMINGMGVTLNMMVMFGLVLAVG 395

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GG 482
           + VD  I+V E    +  +      +      R +  + +  +T L A V   F+    G
Sbjct: 396 ILVDGGIVVVEYADRKMAEGLPKEAAFAAAGKRMFWPVVNGTLTTLCAFVPFMFWNSIAG 455

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             +    +T+   +  S+F A+    A+     R   +    +  + +           F
Sbjct: 456 KFMSFLPLTLFFVLGASIFVALVFTPALGSIFGRKAAVDEETLAEIVKSEHGDPREMRGF 515

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
           M      +         ++       +   + F G
Sbjct: 516 MGWYARTLTYLGAHPTRTMFAGVVIVVAIAVWFGG 550



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 17/159 (10%), Positives = 49/159 (30%), Gaps = 10/159 (6%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
           +II+ I +++ I         L  +    + +   L F  +   G+  N+  +  ++  +
Sbjct: 337 LIIAIILVMLIIVASLGIRQGL--MVGASIPVCFMLAFLMINGMGVTLNMMVMFGLVLAV 394

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+  +VV +      +     +        +        V  ++    + +P   W 
Sbjct: 395 GILVDGGIVVVE---YADRKMAEGLPKEAAFAAAGKRMFWPVVNGTLTTLCAFVPFMFWN 451

Query: 791 GSVIGSFAI---PMAFGIVVAASSSIFIAAPILLFIYDW 826
                  +     + F +  +   ++     +       
Sbjct: 452 SIAGKFMSFLPLTLFFVLGASIFVALVFTPALGSIFGRK 490


>gi|188576249|ref|YP_001913178.1| RND superfamily protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188520701|gb|ACD58646.1| RND superfamily protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 823

 Score =  144 bits (361), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 84/646 (13%), Positives = 184/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATTDGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V      D ++  +   +  +  ++         ++ A +      R+   +I      
Sbjct: 115 AVRDDFPEDLQRFHVFKWSSSDEPVLKVLLASQTDLTGAYDMLD---REFKRRIERIPGM 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S                         N 
Sbjct: 172 AKVKISGAPPNEVEIAIAPDRLTAHDLSLNDLSERL-------------------GKLNF 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +   +++ +G  +            +    +      A+         +      +  G
Sbjct: 213 SVSAGQIDDNGQRIRVQPIGELRDLQELRELVL----NAKGVRLGDIAEVRLKPMRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +     + A      + A      + +    N       S 
Sbjct: 269 RRLDGCPAIGLDVYKERSANLVEVSKAALKEVEDICAQPAMRDVQVKVIDNQGKTVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + S+ G
Sbjct: 329 AELAEGGAVGLLLSITVLFFFLRHWPSTLMVALAIPICFAITLGFMYFVGVTLNILSMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPDQPQLAALLGTRSVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     + S            
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTSEPGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G D      +            +
Sbjct: 509 AKVLAWTLAHRGWSVAGIILVSAISLVPMTLTKIDMFGGDGGNEAFIQYRWKGSYTREQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +                G +   T     VK 
Sbjct: 569 GDEIGRVENYLEANRAKYHITQIYSWFSEVEGSNTVVTFDASKVKD 614



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+        +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDICAQPAMRDVQVKVIDNQGKTVTSSLAELAEGGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+ ++  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVALAIPICFAITLGFMYFVGVTLNILSMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPDQPQLA-----ALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|254411229|ref|ZP_05025006.1| protein-export membrane protein SecD [Microcoleus chthonoplastes
           PCC 7420]
 gi|196181730|gb|EDX76717.1| protein-export membrane protein SecD [Microcoleus chthonoplastes
           PCC 7420]
          Length = 470

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 123/477 (25%), Positives = 210/477 (44%), Gaps = 59/477 (12%)

Query: 43  RISLGLDLRGGSHLVLEVDEDDFVNG----FLQMYSDELRSFLKKEGIGVFSMRQ-IQNK 97
            +  GLDLRGG+ L ++V   + +       L+     +   +   G+    ++    ++
Sbjct: 26  PLQQGLDLRGGAQLTIQVKTTEEITEIAPDQLEAVKTVVDRRVNALGVSESQVQTIGSDQ 85

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           I +        +     +    Q    K     +  L                   Q+  
Sbjct: 86  ILVQLPGVNDPQQAERVLGGTAQLDFRKQIPGTEAQL-------------------QIEQ 126

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
              +Q +      ++     +   + +  ++  ++           +   T   +     
Sbjct: 127 QLRQQLLFEQAALLESEEGGDQEEEAIAENQAALERSNAAIAELFEKTNVTGKNLKDAFA 186

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
            P  +  G+   +RF  +       +   +  +G  +                       
Sbjct: 187 QPTQAGNGWQVAIRFDAEGGQGFAELTRDLAGTGRSIGIFL------------------- 227

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
                              ++    +        I  G A I+GNF ++ A  LAA L+ 
Sbjct: 228 ----------------DDSLISAPTVGPEYAETGISGGSAVITGNFDVQRASDLAAQLKG 271

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           GSLP+ + IVE R VGA LG DSI     A + GL+L++LFM + Y   GL+AD ++ + 
Sbjct: 272 GSLPLPVEIVENRTVGATLGRDSIQSSVYAAIGGLILVLLFMAIYYRLPGLIADVALSIY 331

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
            +LTLA  +L+G TLTLP IAG +L IG+AVD+N+L+ ER REE R+ ++++ S++ GF 
Sbjct: 332 ALLTLAAFALIGVTLTLPGIAGFILSIGMAVDANVLIFERTREELREGKTLYRSVESGFY 391

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           RA+S+I DSN+T LIA   LF+ G G V+GFA+T+G+ ++ISMFTA++  R  M+ +
Sbjct: 392 RAFSSILDSNLTTLIACAALFWLGSGLVKGFAVTLGIGVVISMFTALTCTRTFMLLL 448



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 92/248 (37%), Gaps = 4/248 (1%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            G     +  +       +   L+   I   +      E           G+   Q    
Sbjct: 205 GGQGFAELTRDLAGTGRSIGIFLDDSLISAPTVGPEYAETGISGGSAVITGNFDVQRASD 264

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
              + K   +     I     VG  + R+ I+  +   I   I +L+++ I ++    L 
Sbjct: 265 LAAQLKGGSLPLPVEIVENRTVGATLGRDSIQSSVYAAIGGLILVLLFMAIYYRLP-GLI 323

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           A   L +    TL  FAL G+   L  +A  +  IG +V+  V++++R R+ ++      
Sbjct: 324 ADVALSIYALLTLAAFALIGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRE---GK 380

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           +    ++          + +++   I+   +   G  ++  FA+ +  G+V++  +++  
Sbjct: 381 TLYRSVESGFYRAFSSILDSNLTTLIACAALFWLGSGLVKGFAVTLGIGVVISMFTALTC 440

Query: 816 AAPILLFI 823
               +L +
Sbjct: 441 TRTFMLLL 448


>gi|192359028|ref|YP_001982943.1| AcrB/AcrD/AcrF family protein [Cellvibrio japonicus Ueda107]
 gi|190685193|gb|ACE82871.1| AcrB/AcrD/AcrF family protein [Cellvibrio japonicus Ueda107]
          Length = 1029

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 60/625 (9%), Positives = 179/625 (28%), Gaps = 38/625 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +I  +G+  A    + Q           +               V    
Sbjct: 9   QRPVLSIVVSLLILILGIQAASSLSVRQYPRSDIAVITIET--------------VYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    +   +  +       S     + I +    +        +++  +  
Sbjct: 55  NAELIRGFITAPIERAVASAEGIDYIASSSVMGMSTIKVHLRLNYDPLKAMTEISAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +   +   +          +   +++    + +  + R    ++       
Sbjct: 115 VRGNLPPEAEVPAIRVDSADSEFAAAYLSFSSEIL-EQNQITDFLTRLVQPRLTAVAGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  T  ++       N           +       Q 
Sbjct: 174 KAEVLGGRTFAMRIWLKPERMAALNVTPVQVRAALAANNVQAAIGQTRGSY------TQV 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +++ +                   +                ++           
Sbjct: 228 NLRADTDLTSVDEFRQ--------------MIIRNTADGIVRLSDIADVVLGAESYDVVV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +    ++       ++++         V   +      +   
Sbjct: 274 NYSGDTAVFMGVWVAPTANSLEVMKAVNEEMEIIKSELPTGLSGTVAYDSTEYIDAAIHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      ++++V+F+ + + +  ++   +I L++I  L ++ + G +L L ++  IV
Sbjct: 334 VIKTLTETLLIIVLVIFLFLGFSRSVIIPVLAIPLSLIGALFIMQICGFSLNLLTLLSIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I    ++    + +  +        I    +T     + +   G
Sbjct: 394 LCVGLVVDDAIVMVENIERHIQEGLKPYRAAIVAARELAGPILAMTVTLASVYIPIGLQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FAIT+  ++ IS   AI++   +   +++  K  +  +      F      
Sbjct: 454 GLTGTLFREFAITLAGAMTISAVVAITLSPMLGSRMLKPHKGLNAPLEKPFEKFKTWYAE 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +        G+ +  +        L+          +    +  + +   + +V +S+ 
Sbjct: 514 KLGVSLENRAGIYVFWVVVAFLCVPLYMMSPKELAPTEDQGVIFGIVDAQANSTVDQSDF 573

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQY 623
              Q+        + +  F + +  
Sbjct: 574 YGRQVNQALMSFPESDFTFQLTMPT 598



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 93/259 (35%), Gaps = 11/259 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            + +   A+  V LS +   +   +  D+          F+        +S+   + +  
Sbjct: 243 QMIIRNTADGIVRLSDIADVVLGAESYDVVVNYSGDTAVFMGVWVAPTANSLEVMKAVNE 302

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGA 696
             + I   +P            +     I + I  +  + + +++ I++   +    +  
Sbjct: 303 EMEIIKSELPTGLSGTVAYDSTEYIDAAIHEVIKTLTETLLIIVLVIFLFLGFSRSVIIP 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           +  + L +   L    + G   NL  + +++  +G  V+D +V+ + +    +     + 
Sbjct: 363 VLAIPLSLIGALFIMQICGFSLNLLTLLSIVLCVGLVVDDAIVMVENI---ERHIQEGLK 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                  +  E  G  +  ++      +P+ + G   G++   FAI +A  + ++A  +I
Sbjct: 420 PYRAAIVAARELAGPILAMTVTLASVYIPIGLQGGLTGTLFREFAITLAGAMTISAVVAI 479

Query: 814 FIAAPILLFIYDWRAKNAR 832
            ++      +     K  +
Sbjct: 480 TLSP----MLGSRMLKPHK 494



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 58/173 (33%), Gaps = 24/173 (13%)

Query: 672  GVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI-------------- 716
             + ++ I + + +  ++  +   L  +   +       G      +              
Sbjct: 843  ALTLAIIMIFLVLAAQYNSFRDPLVILAGSVP--LAMFGALIFTFLKLPMPMPFFTNGFT 900

Query: 717  -EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               N+ +   ++TL+G    + ++V +      KL     +  D I ++    L   + T
Sbjct: 901  STLNIYSQVGLVTLMGLIARNGILVVEFAN---KLQEQGRAKLDAIREAAVLRLRPVMMT 957

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            S+A      P+      G     S  I +  G+ +    ++F+   + + +  
Sbjct: 958  SIATIAGHTPLIFASGPGAEARNSIGIVLVLGMTIGTFFTLFVLPSVYMLLAK 1010


>gi|294506933|ref|YP_003570991.1| Multidrug resistance protein, [Salinibacter ruber M8]
 gi|294343261|emb|CBH24039.1| Multidrug resistance protein, putative [Salinibacter ruber M8]
          Length = 1398

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/537 (11%), Positives = 156/537 (29%), Gaps = 25/537 (4%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
              + ++++I  +G L +          +  PS      +            V       
Sbjct: 101 RTAIAVFTLILAVGGLAS----YLTIPKESNPSIEFPQIV---------VTSVYPGASPS 147

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V   +    ++  S +        +  +  + I + F      +    +V   +     
Sbjct: 148 DVESTVSQVIEQEISSINGIDEMRSTSSEGVSTIVVEFTPDVNTDKAYQEVNRAVDRAQP 207

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
            L    ++ L+      +  I+    +      +++ +   +     D +    S ++  
Sbjct: 208 DLPEAVEEPLVDEINTDQFPIMTVNLSGT----YSLARLKTVAEDLQDDLEGISSVLEAN 263

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
               +  ++    D + L+    +   +       N +  G    V  L          +
Sbjct: 264 LIGGLTREVQVNVDLAALKNYNVSYNSLVNTIQQENTNIPGGSIDVNRLNYLVRVDGQFD 323

Query: 245 DKVEISGIHLNGATANFD--PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
              +     +   TAN           V   F +  +     V +        V +    
Sbjct: 324 QPAQQIEELVVKTTANGRTVQVKDVADVIFGFKDRTSYSRLRVLKRERADGETVSVPASE 383

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +     + +   +   T +                   ++            +  
Sbjct: 384 RRTAQVISLNVTKRPGANILETSDAVKSTLDAFS--FPSGTEVLLTGDQSENVQSLVTDL 441

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +         V+ VL   +      LV   +I L++  +  +   LG TL    +  +++
Sbjct: 442 ENNIISGLIFVIAVLLFFLGVRNATLVGI-AIPLSMFTSFLVFQALGYTLNFIILFSLII 500

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G+ VD+ ++V E I     +  S + S  +G +     +  +  T + A   +  +  
Sbjct: 501 ALGMLVDNAVVVIENIYRFREQGYSRWESARLGTAEVGGPVVAATATTVSAFAPMLLWPG 560

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  +    +T+ +++  S+F A+ I   +  F +  K   + +        L   
Sbjct: 561 IIGEFMSYMPLTLIITLTSSLFVALIINPVITGFFVEVKGRSNGEKGSSRWPALARY 617



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 76/267 (28%), Gaps = 25/267 (9%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L V   R   + +          G  S    D  +   V     PG +  +       +
Sbjct: 1080 SLTVTNPRGQQIPLTSVADIEEGTGFGSITRIDQNRVVTVSGAAAPGYNGPEVLTRVQDE 1139

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
                              G +  +E        ++I A  +L+ + + F         + 
Sbjct: 1140 LSEYRQGLPPGYTMEYTGGNEDQQESFGFLTTALLIGASLILLILIVEFNSISAPFIIMV 1199

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             + L +   L    L    FNL     ++ L G  VN+ +V+ D +   M+L       +
Sbjct: 1200 AVGLSMIGVLLGLILTRTPFNLFTFIGIIALAGIVVNNNIVLVDYI---MQLRGRGQDKQ 1256

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPM------------------AVWGGSVIG---SF 797
              I +     L   + T++   + ++P+                    +G          
Sbjct: 1257 AAIVEGGATRLRPVLLTALTTILGLVPLTFGINVDFVGLLADFAPNFQFGSENTQFWGPM 1316

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIY 824
               +  G+  A   ++ I   +     
Sbjct: 1317 GTAIISGLTFATFLTLVIVPVMYSVFD 1343



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 84/257 (32%), Gaps = 8/257 (3%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L       G   +      V+       S  R  +   +  D    +    +    ++  
Sbjct: 332 LVVKTTANGRTVQVKDVADVIFGFKDRTSYSRLRVLKRERADGETVSVPASERRTAQVIS 391

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV----GVIISAIA 679
                     +LE      + +   S    TE++      E ++  +      +I   I 
Sbjct: 392 LNVTKRPGANILETSDAVKSTLDAFSFPSGTEVLLTGDQSENVQSLVTDLENNIISGLIF 451

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ++  +        A      + L +  +   F   G   N   + +++  +G  V++ VV
Sbjct: 452 VIAVLLFFLGVRNATLVGIAIPLSMFTSFLVFQALGYTLNFIILFSLIIALGMLVDNAVV 511

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           V + +    +      S  +       E  G  V  +     +  PM +W G +IG F  
Sbjct: 512 VIENI---YRFREQGYSRWESARLGTAEVGGPVVAATATTVSAFAPMLLWPG-IIGEFMS 567

Query: 800 PMAFGIVVAASSSIFIA 816
            M   +++  +SS+F+A
Sbjct: 568 YMPLTLIITLTSSLFVA 584


>gi|261346616|ref|ZP_05974260.1| multidrug efflux RND transporter [Providencia rustigianii DSM 4541]
 gi|282565321|gb|EFB70856.1| multidrug efflux RND transporter [Providencia rustigianii DSM 4541]
          Length = 1032

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 70/680 (10%), Positives = 193/680 (28%), Gaps = 42/680 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  +GL       L +  + ++P                         
Sbjct: 9   RRPVLALVVSALIVLVGLFA-----LSKLPIRQYPQLESATIT---------ISTQYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               + GF+     +  S ++       S  Q  + +T+    +R       +V   +  
Sbjct: 55  SAKLMQGFVTQPIAQAVSSVEGVDYLSSSSVQGSSLVTVRMELNRDSTQALTQVMAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  +    ++  ++ +  ++        ++   A   +  I R         +   
Sbjct: 115 VRYKLPKEAYDPVIELSSGESTAVAYIGFASTELSIPA--LTDYISRVVEPMYSSIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +        + +    D  +L     + A+++      N           +         
Sbjct: 173 KVQVFGGQQLAMRLWLDADKLAGRGISAAEVAQAVRQNNYQAAPGKVKGEY--------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       ++    N D    +   D+     G           +    +      
Sbjct: 224 -----------VISNVYVNTDLTNVEEFRDLVIRNDGNGLVRLKDVGTVELGASSTETSG 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++                +    ++    L   +     P     +          S   
Sbjct: 273 LMNGEPAIYLGLFATPTGNPLVIVDGMNALMPDIVKTLPPGVKIEMAFETSRFIKASIDQ 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V+ V+++ +   +  ++   +I L+++   AL+   G ++ L ++  +V
Sbjct: 333 VINTLVEALLIVIAVIYLCLGSIRSVIIPILAIPLSMLGAAALMMAFGFSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I+V E +     + +S   +  +G       +    IT       +    
Sbjct: 393 LAIGLVVDDAIVVVENVHRHIEEGKSPVLAALIGAREVAGPVIAMTITLAAVYAPIGLMS 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIPD 536
              G   + FA+T+  ++++S   A+++   M  F++  K+ +     +       L   
Sbjct: 453 GLTGALFKEFALTLAGAVIVSGVVALTLSPVMSSFMLNSKQNEGRMARMAETFFNTLANY 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
             A+     +   +   +   +     +        +         + A +    + +  
Sbjct: 513 YTAVLNFSLKNRWITGILALGVVISLPMLYQSAPRELAPVEDQSSVLTAIKSPQHANLEY 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
                +     F +    ++  +        +      L   +++      + +     +
Sbjct: 573 VERFSRKLHDVFMDLPETESTWIINGTDGPSASFGGTNLSSWEQRNRPASEIQSDLQARV 632

Query: 657 VGPKISRELIRKGIVGVIIS 676
            G      +    +  +  S
Sbjct: 633 -GEVEGNSIFVFQLPALPGS 651



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 89/258 (34%), Gaps = 7/258 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    N  V L  V +        + S         +L       G+ +     +  + 
Sbjct: 244 VIRNDGNGLVRLKDVGTVELGASSTETSGLMNGEPAIYLGLFATPTGNPLVIVDGMNALM 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
             I + +P            +  +  I + I  ++ + + ++  I++        +  I 
Sbjct: 304 PDIVKTLPPGVKIEMAFETSRFIKASIDQVINTLVEALLIVIAVIYLCLGSIRSVIIPIL 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L +         FG   NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 AIPLSMLGAAALMMAFGFSINLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGKSPV 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E  G  +  ++       P+ +     G++   FA+ +A  ++V+   ++ +
Sbjct: 421 LAALIGAREVAGPVIAMTITLAAVYAPIGLMSGLTGALFKEFALTLAGAVIVSGVVALTL 480

Query: 816 AAPILLFIYDWRAKNARI 833
           +  +  F+ + +    R+
Sbjct: 481 SPVMSSFMLNSKQNEGRM 498



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 81/247 (32%), Gaps = 10/247 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V A     + +      S Q+       F+ +   + +    PG ++ Q           
Sbjct: 765  VKAQDSSMIPLSTVVEISTQVEPNKLTQFNQQNAAIFQAIPAPGVTLGQAVAYLDEIASE 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L        + + + + + +  +++     L  + T+ 
Sbjct: 825  LPAGFSHDWQSDSRQYKQEGNTLA----FAFMAALVIIYLVLAAQYESLVDPLIILITVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     N+     ++TLIG      +++ +   +        +  R  I
Sbjct: 881  LSICGALIPLALGYATLNIYTQIGLVTLIGLISKHGILMVEFANE--LQANEGLDKRQAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             K+    L   + T+ A  I ++P+      G +      + +  G+++    ++F+   
Sbjct: 939  LKAAQIRLRPILMTTAAMVIGLVPLLFATGAGANSRFGLGLVIVTGMLIGTLFTLFVLPT 998

Query: 819  ILLFIYD 825
            I   +  
Sbjct: 999  IYSLLAR 1005


>gi|225620944|ref|YP_002722202.1| putative acriflavin resistance protein [Brachyspira hyodysenteriae
           WA1]
 gi|225215764|gb|ACN84498.1| putative acriflavin resistance protein [Brachyspira hyodysenteriae
           WA1]
          Length = 1030

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 71/538 (13%), Positives = 160/538 (29%), Gaps = 43/538 (7%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
              +  +G +      L +  +D  P   +P   I    D  G           + V   
Sbjct: 3   IVAVVILGAVS-----LSRLPVDFLPDMELPFISIRTTYDNAG----------PEEVEKS 47

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +   S +        S  + ++++ + F       +    +   +  +   L  D
Sbjct: 48  VSRIIESAVSSVNNIKEVSSSSEEEESRVFIEFNWGSDLASATADIREAIDRIRKSLPDD 107

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            +   +   +   I ++                   +  Q +  I              +
Sbjct: 108 AESPAVYKFSTDNIPVMEISFYGTDN---LSALYNLVDNQILTSIEQVGGVAMAEIRGGL 164

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+  + D +RL+        +     + N +  G        + +       +   +I
Sbjct: 165 KTQIKVDVDMNRLQAYGLDINSIVSTLAMENQNISGGETYEGVYKYTLRTTGEFKTVNDI 224

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                                 +   +  +          I +      D   +      
Sbjct: 225 G-------------------NVVVALKTNSTPIRLRELATIYEGYDEDGDVMKVNGTPAV 265

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
               + ++  +     +        L           V   +      +      T    
Sbjct: 266 NVSINKESGANTVAVSDAIKKRLDSL--NLPEGIKYEVLFNSADNVNNAIKGVLDTAWQG 323

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
               +I+L + +   +  L+   SI +++I+T  L+   G TL + S++G+VLGIG+ VD
Sbjct: 324 GLFAVIILMLYLWNVRTVLIIAISIPMSIIVTFTLMYFFGTTLNIISLSGLVLGIGMMVD 383

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVR 486
           ++I+V E I          + S   G S     I  S +T +   +   F     G   R
Sbjct: 384 NSIVVLENIFFYRNNGYGKYSSAIDGTSTVALAISASTLTTIAVFLPFLFVEGQTGQMFR 443

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
              IT+ +S++ S+  A+++V  +   ++  KK K +              +   + +
Sbjct: 444 DLCITVTVSMIASLAVALTVVPMLGARLVTTKKSKFLSRFENFFDKYFHSRVNYIYEK 501



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 85/237 (35%), Gaps = 8/237 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             S + S+       +      + +  +            + ++      ++   S     
Sbjct: 768  ISAVASVDKNFAPTEITRKNDSRITSITAAGYGRPMNQIMNDVQAAINQKVFVPSGFTIV 827

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +  +E   + I  + ++ + +   +  +F+ Y A   +  L +        F L 
Sbjct: 828  YSGDYEDMQEAFGQLIQALFLALVLVYAIMASQFESYIAPF-VIALAIPFGFAGSLFLLL 886

Query: 715  --GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              G   ++ +   V+ LIG  VN+ +V+ D M  N  ++   I+       +    L   
Sbjct: 887  ITGQTLSVYSGIGVIVLIGIVVNNGIVLIDYM--NQLMHEKKINGDKAALIAGPRRLRPV 944

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + TS+   + +LPMA+    G  +    ++ +  G+ V+   ++ I   +   I + 
Sbjct: 945  LMTSLTTILGLLPMALSSGEGNEMYQPLSLAVLGGLTVSTMFTLVIVPTVYAAIRNR 1001



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 80/259 (30%), Gaps = 6/259 (2%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + V          +R      +  D             V +            V 
Sbjct: 222 NDIGNVVVALKTNSTPIRLRELATIYEGYDEDGDVMKVNGTPAVNVSINKESGANTVAVS 281

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV--GVIISAIAMLIYIWIRFKWYFA 693
           + +KK++  +     I+   +     +     KG++         A++I +   +     
Sbjct: 282 DAIKKRLDSLNLPEGIKYEVLFNSADNVNNAIKGVLDTAWQGGLFAVIILMLYLWNVRTV 341

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    ++ + I  T      FG   N+ +++ ++  IG  V++ +VV + +         
Sbjct: 342 LIIAISIPMSIIVTFTLMYFFGTTLNIISLSGLVLGIGMMVDNSIVVLENIF--FYRNNG 399

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
              +   ID +    L  S  T +      LP     G     F   +   + V+  +S+
Sbjct: 400 YGKYSSAIDGTSTVALAISAST-LTTIAVFLPFLFVEGQTGQMFR-DLCITVTVSMIASL 457

Query: 814 FIAAPILLFIYDWRAKNAR 832
            +A  ++  +        +
Sbjct: 458 AVALTVVPMLGARLVTTKK 476


>gi|154705814|ref|YP_001424161.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           Dugway 5J108-111]
 gi|154355100|gb|ABS76562.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           Dugway 5J108-111]
          Length = 1022

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/554 (11%), Positives = 145/554 (26%), Gaps = 31/554 (5%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   V   +    +E  S ++     +    Q ++ I L+         +A+++  
Sbjct: 51  YPGASAKLVESSITTPLEEGISGVQGIDTIISQSFQGESDIKLTLDYGVNVYEVANQIRD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++    +L  +    ++         + L          +       + R  IDQI   
Sbjct: 111 KVEQARVQLPTNINAPVVQVGWGN---MELMDVGFTAPNENPKAIRDYLERNVIDQIEQI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                   +      +    DP ++     +   +       N                 
Sbjct: 168 PGIADVEVAGANQYAMRIWLDPQKMAARGLSVNDVQMAIQNSNVELPAGEIKG------- 220

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                       S I+             +    I  ++ G     +          +  
Sbjct: 221 ------------SSINYPITAETKLNTADQFNNIIVKNDNGQVIRIKDIGQAQLGDDSAD 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +     +        +R         +          G
Sbjct: 269 QSIVTLDGQPGVLLSINNATDANPLDAAKNVNHFLNQIRPHLPNGMKIVPSFDISAYMHG 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      +  I    V++V+F+ +   +   +   +I + +I +   + LLG ++ + ++
Sbjct: 329 SIHEVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYLLGFSINVITL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I++ E I       +    +   G       +    IT       +
Sbjct: 389 LALVLSIGLVVDDAIVMLENIYRHIENGEKPLIAAIKGSKEITFPVIAMTITLAAVYAPI 448

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPL 528
                      R FA T+  ++LIS F A+++   M                + I+    
Sbjct: 449 GLMQNQAANIFRSFAFTLAGAVLISGFVALTLSPMMCSRFLKAQGGEPKGYSRIIETIYE 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +A    +         ++                  +  G +   V  +  
Sbjct: 509 RMAQGYQKILAAILNKRILVVFAAVLIAVGGFFLAKNIPMAFVPQEDMGFVIAAVSTSSG 568

Query: 589 VDLSVVRSNLESLQ 602
             ++ +   LE + 
Sbjct: 569 SSINTINRGLEQVA 582



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 77/227 (33%), Gaps = 7/227 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++ L                   L        + +   + +     +I   +P       
Sbjct: 259 QAQLGDDSADQSIVTLDGQPGVLLSINNATDANPLDAAKNVNHFLNQIRPHLPNGMKIVP 318

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                      I +  + + I+ + +++ I++   +       I T+ + +  + G   L
Sbjct: 319 SFDISAYMHGSIHEVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   N+  + A++  IG  V+D +V+ + + ++++           I  S   T     
Sbjct: 379 LGFSINVITLLALVLSIGLVVDDAIVMLENIYRHIENGEK--PLIAAIKGSKEITFPVIA 436

Query: 774 YTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAA 817
            T +       P+ +       +  SFA  +A  ++++   ++ ++ 
Sbjct: 437 MT-ITLAAVYAPIGLMQNQAANIFRSFAFTLAGAVLISGFVALTLSP 482



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/417 (11%), Positives = 118/417 (28%), Gaps = 13/417 (3%)

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G V       +      +   L    ++   A  V  +    D+N    + +    +  
Sbjct: 556 MGFVIAAVSTSSGSSINTINRGLEQVASIFKQAPAVASVVTVADTNAKAFDSVFAMLKPF 615

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM--------GLSIL 497
           +    S           I         A    F         F +              L
Sbjct: 616 KDRKQSASQVADVINQKIKQIPGLNAAAFAPSFGGSMQHQLEFYLMGDTYSDLYAVSQKL 675

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           I+       +R +   +    +  ++ +N      L  +   I    A  +G      F 
Sbjct: 676 INQLGNYPGLRVIQSNMRFDSQQYNMTVNRDIAGQLQVNIKDIDNTMAALYGGSKISTFD 735

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                                       N   +  +  SNL S++            +  
Sbjct: 736 ANGKTYNVYLQAQENDLHSLASINKFYVNNAQNKLIPLSNLISIKPILSQVVLPHYNRLR 795

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             ++  Q         V+  ++ ++ +++P +           +       G++ ++ + 
Sbjct: 796 AAQMSAQLAPGYNLGTVVNYLQTELPQLLPANVKYAFTGQAHDLLTSNNSMGLIFLL-AM 854

Query: 678 IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           + + + +  +F+ +      +  + L I   +    L G   N+     ++TLIG     
Sbjct: 855 VFIYLVLAAQFESFIDPFIILLAVPLSIVGAMASLKLIGGTLNIYTDIGLVTLIGLVSKH 914

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +++        +L    ++ R+ + K+ +  L   + T+ A     LP+    G  
Sbjct: 915 GILITQFAN---RLQKEGLAMREALLKAASIRLRPILMTTAAMVFGALPLLFSSGGS 968


>gi|254423125|ref|ZP_05036843.1| protein-export membrane protein SecD [Synechococcus sp. PCC 7335]
 gi|196190614|gb|EDX85578.1| protein-export membrane protein SecD [Synechococcus sp. PCC 7335]
          Length = 491

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 138/516 (26%), Positives = 221/516 (42%), Gaps = 76/516 (14%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDFVN 67
            +   +GL+IA    + Q                LGLDLRGG+ L ++V           
Sbjct: 27  ILASLLGLVIAAIVLIVQVPTQ------------LGLDLRGGTQLTMQVSPTEEIPSVGE 74

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
             L      + + +   G+    ++   Q+++++        E     +    Q      
Sbjct: 75  SELAAVQRVIENRVNGLGVSEAVVQSVGQDQLSIQLPGVSDPEQAERVLGGTAQLEFRNQ 134

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                                      +     +++  +    +   +   +     + +
Sbjct: 135 KPG-----------------------TEGALAELQRIAQQQLAQQQLLLDGDGDEAAIAA 171

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
           ++  I        +   +   T  K+S        +     + V    DS+G     E  
Sbjct: 172 NQAAITETQADILNLFEESQLTGDKLSDAIA---GTNGAGAWQVDITFDSEGADLFAELT 228

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
             I+G          +     P VD+ + + G                            
Sbjct: 229 RNIAGTGRGLGIFLDNQLISAPRVDVQYAQTG---------------------------- 260

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                I  G+A ISGNF +E A  L   LR GSLP+ + IVE R VGA LG DS+ +   
Sbjct: 261 -----IAGGRATISGNFDVEAARDLEIQLRGGSLPLPVEIVENRTVGATLGRDSVERSLY 315

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           A + GL L+++FM V Y   G++AD ++ +  ILT A  +LLG TLTLP IAG +L IG+
Sbjct: 316 AALLGLALVLVFMAVYYRLPGILADIALVVYAILTFAAYNLLGVTLTLPGIAGFILSIGM 375

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           AVD+N+L+ ER REE R  ++++ S++ GF RA+S+I DSN+T LIA   LFF G G VR
Sbjct: 376 AVDANVLIFERTREEMRAGKTLYRSVESGFYRAFSSILDSNVTTLIACGALFFLGTGLVR 435

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           GFA+T+ + +L+SMFTA+S  R ++ F I + + + 
Sbjct: 436 GFALTLAIGVLVSMFTAVSCSRTLLFFAIGFPQFRK 471



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 64/140 (45%), Gaps = 4/140 (2%)

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + ++    + A   L++    T   + L G+   L  +A  +  IG +V+  V++++
Sbjct: 327 FMAVYYRLP-GILADIALVVYAILTFAAYNLLGVTLTLPGIAGFILSIGMAVDANVLIFE 385

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R R+ M+      +    ++          + +++   I+   +   G  ++  FA+ +A
Sbjct: 386 RTREEMRA---GKTLYRSVESGFYRAFSSILDSNVTTLIACGALFFLGTGLVRGFALTLA 442

Query: 803 FGIVVAASSSIFIAAPILLF 822
            G++V+  +++  +  +L F
Sbjct: 443 IGVLVSMFTAVSCSRTLLFF 462


>gi|163848933|ref|YP_001636977.1| acriflavin resistance protein [Chloroflexus aurantiacus J-10-fl]
 gi|222526886|ref|YP_002571357.1| acriflavin resistance protein [Chloroflexus sp. Y-400-fl]
 gi|163670222|gb|ABY36588.1| acriflavin resistance protein [Chloroflexus aurantiacus J-10-fl]
 gi|222450765|gb|ACM55031.1| acriflavin resistance protein [Chloroflexus sp. Y-400-fl]
          Length = 1100

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 63/585 (10%), Positives = 161/585 (27%), Gaps = 44/585 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   ++ ++       G+L         + ++  P                   +     
Sbjct: 20  RQPVFITMVMLAFITFGILS-----FRSTPVNLLPEIDVPII---------AVSVSYPGA 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + L           +    I L F      + + + V   +  
Sbjct: 66  GPESVVDQVVRPIENAVNTLAGLQHITSQASEGSALIILEFEAGNDAKQLEEDVRQRVNS 125

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  D ++ +       +  I+             +E    I  + +  I  +    
Sbjct: 126 ILPQLPRDVRQPVYQRFDPNQSPIMQIAVADTSG-RSPLELRTLIEEEIVPLIQRASGVG 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     Q+    D ++L+      A++S      N +             S     
Sbjct: 185 SVTVNGGQQRQINVWLDLAKLQAYGLLPAQVSRSLQQANANLGLGTIVENNTEISLRVPS 244

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+    +I+ + ++                          +       + + +A V    
Sbjct: 245 LLRSAADIANVQIS-----------------------GTPYRVGDVAVVEEGVADVTTIS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            ++  +     +          A         +      A   S   
Sbjct: 282 RLNGSEAIIINVLKQSGANTVTVADNVYRAMDQAFAAFP-ELTYTIPLDASEAVRSSVLS 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   +    +V++      +  ++    + + +I T   + + G T+ L ++  + 
Sbjct: 341 SLEELMFASVAAFLVVWFFFGNLRSTIITMSGLPVILIGTFIFMPIFGLTINLVTLLALS 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +GL +D  I+V E I     + +S   +   G      ++    +T +   V + F  
Sbjct: 401 LCVGLVIDDAIVVRENIFRHLERGESARVASSRGTWEVGLSVVAMTLTIVAVFVPVTFAE 460

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F + + ++IL+S+  A +    +   +     MK        +   I +  
Sbjct: 461 GVAGIVFKSFGLVVSIAILLSLAEAFTFAPMLSANLFPN--MKVKPKTHHQQHQPIVEVP 518

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
               +  R  G+          +   +   L + +       + V
Sbjct: 519 ISDEVSERDIGLLQEANEDPGRLGRWYGKLLGWTLASLRNRLIVV 563



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 64/152 (42%), Gaps = 9/152 (5%)

Query: 673 VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++ +++A  + +W  F      +  ++ L + +  T  F  +FG+  NL  + A+   +G
Sbjct: 345 LMFASVAAFLVVWFFFGNLRSTIITMSGLPVILIGTFIFMPIFGLTINLVTLLALSLCVG 404

Query: 732 YSVNDKVVVYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
             ++D +VV    R+N  +      S R    +   E     V  ++      +P+    
Sbjct: 405 LVIDDAIVV----RENIFRHLERGESARVASSRGTWEVGLSVVAMTLTIVAVFVPVTFAE 460

Query: 791 GS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           G    V  SF + ++  I+++ + +   A  +
Sbjct: 461 GVAGIVFKSFGLVVSIAILLSLAEAFTFAPML 492



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/207 (10%), Positives = 75/207 (36%), Gaps = 18/207 (8%)

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688
              T     ++++I  +     +  + +     + E      + + +S + + + +  +F 
Sbjct: 840  NLTDAQAALQQRIEALNIPPNVVVSYVGTFAQTNEGFSSLFLAMGLSVLFVYMVLASQFG 899

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMR 745
             +   L  +  +            + GI+ ++T +  ++ L+G  V + +++ D   R+R
Sbjct: 900  SFTQPLVIMMAMPFSFIGAFLALRMVGIDLDITGMIGLIMLLGLVVKNSILLVDFTNRLR 959

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--------GGSVIGSF 797
            +        +     +  +    L   + T+++     +P A+         G       
Sbjct: 960  EL------GLDKHSALKLAGAIRLRPILMTALSLVAGAMPTALGLHLLATGEGNEFRKGL 1013

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIY 824
            A  +  G++ + + ++ +   +   + 
Sbjct: 1014 AWVLIGGMLTSTALTLLVVPTVYSLMD 1040



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 56/525 (10%), Positives = 131/525 (24%), Gaps = 41/525 (7%)

Query: 10   LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
            L  +   I +L+          L  FP   P   +                         
Sbjct: 560  LIVVGIAIAVLVLSVWVASGLKLTFFPEQDPHEFV---------MRFEAAPGTTLAETDR 610

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
            L   ++++          +  +          FA +             L+   + L   
Sbjct: 611  LARQAEQILLNDPAVENVIARVGFPGFPERAEFAVTLVGRTPTLPTQEQLREQLTFLPRL 670

Query: 130  PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                     +   +     Q ++      A E +  +   + +   I             
Sbjct: 671  SFSVPSFQPSSAGVEGRELQVSLQT-TGPATELAPLVEAIKREMAAIPGLVDIDSNLQVG 729

Query: 190  LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +L    DP+R+ +L  T   ++                   L + D    L  D  ++
Sbjct: 730  KPELRLRADPARIGELGITNEDIATSVRA--------------LINGDRATVLRTDNTDL 775

Query: 250  SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
              +           +T   +   +   +              +      D         N
Sbjct: 776  DVVVRLAPQDRAGIETLGAISIPTRAGVVPLSSLGTVELASSQVSIRRYDRLNQVLIGAN 835

Query: 310  QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                +           +    L   + A ++P  + +             S       + 
Sbjct: 836  LEGINLT---------DAQAALQQRIEALNIPPNVVVSYVGTFAQTNEGFSSLFLAMGLS 886

Query: 370  AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
               V +VL          LV   ++  + I     L ++G  L +  + G+++ +GL V 
Sbjct: 887  VLFVYMVLASQFGSFTQPLVIMMAMPFSFIGAFLALRMVGIDLDITGMIGLIMLLGLVVK 946

Query: 430  SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--------FG 481
            ++IL+ +              +L +  +     I  + ++ +   +             G
Sbjct: 947  NSILLVDFTNRLRELGLDKHSALKLAGAIRLRPILMTALSLVAGAMPTALGLHLLATGEG 1006

Query: 482  GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
                +G A  +   +L S    + +V  +   +            
Sbjct: 1007 NEFRKGLAWVLIGGMLTSTALTLLVVPTVYSLMDAAVTWVKQRFG 1051


>gi|294678416|ref|YP_003579031.1| multidrug resistance protein MdtF [Rhodobacter capsulatus SB 1003]
 gi|294477236|gb|ADE86624.1| multidrug resistance protein MdtF [Rhodobacter capsulatus SB 1003]
          Length = 1030

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 74/622 (11%), Positives = 167/622 (26%), Gaps = 43/622 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFL---- 81
           +PQ  + RFP   P               + +           +       +   L    
Sbjct: 27  IPQLPVARFPEVAPP-------------SISIFATYAGADAQTVNDSVVRPIERELASVK 73

Query: 82  KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
               +           + L+F      E     V   L+   + L  + ++  +     +
Sbjct: 74  NVISVDSSVDATGGATLFLTFKPGTNPEMAQVDVQNRLKNAEALLPEEVRRAGIGVEAAE 133

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
           +  +++            +     + R   +++       +          L    DP+R
Sbjct: 134 QGFLMVLTLKSRSGAMDELSLGDYLSRTLSEELKRLPGVGRVQPFGS-ERALRIWVDPAR 192

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           L       + ++      N        G             +  + +++           
Sbjct: 193 LAAYGLGLSDVTEAIARENIRATPGRVGDAPTVPGTRVSTPLILQGQLT----------- 241

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                          +   R        +      +             A        + 
Sbjct: 242 --TPEAFAAIPLRAGLDGSRLTLGDVARVEIGAQTLAFSVSANGKPAAAAAVQMAPGANA 299

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
             T          LR          +          S +    T      LV +V+ + +
Sbjct: 300 LRTAAAIEARLDELRPSLPGDMEVTISYNTAPFVKVSIAKVISTLFEAMALVFLVMLLFL 359

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              ++ L+      + ++ T A+++L G ++ + S+ G+VL IG+ VD  I+V E +   
Sbjct: 360 QNLRYTLIPTIVAPIALLGTFAVMALAGYSINVLSMFGMVLAIGIIVDDAIVVVENVERI 419

Query: 442 N-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSIL 497
             R+  S   +           I    +      + +   GG      R F ++M +SIL
Sbjct: 420 MARQGLSPKAATRQAMDEISGAIIGITLVLAAVFIPMGLAGGSVGAIYRQFTLSMAVSIL 479

Query: 498 ISMFTAISIVRAMMIFIIRY-------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
           IS F A+++  A+   +++            + +    +        + +   R      
Sbjct: 480 ISAFLALTLTPALCATLLKPATAHASTGFFGAFNRGFAALSVRYTGWVGLVLRRGGRMAG 539

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
               L ++ +I            + +G     V           R+ + + +    +   
Sbjct: 540 LYLALLAVLAIGYTRLPTAFVPEEDQGNFITTVELPAGATAERTRAVVAAFEAHAATRPA 599

Query: 611 FDGEKNFLVRLQYQPGDSVAQT 632
            D     L       G + AQ 
Sbjct: 600 IDETTVILGFGFTGSGPNAAQA 621



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 61/143 (42%), Gaps = 9/143 (6%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +R+     + A   L      T    AL G   N+ ++  ++  IG  V+D +VV + + 
Sbjct: 362 LRYTLIPTIVAPIAL----LGTFAVMALAGYSINVLSMFGMVLAIGIIVDDAIVVVENV- 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
               +    +S +    ++++E  G  +  ++      +PM + GGSV      F + MA
Sbjct: 417 -ERIMARQGLSPKAATRQAMDEISGAIIGITLVLAAVFIPMGLAGGSVGAIYRQFTLSMA 475

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
             I+++A  ++ +   +   +  
Sbjct: 476 VSILISAFLALTLTPALCATLLK 498



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 67/169 (39%), Gaps = 7/169 (4%)

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + +  S + + + +   ++ W   +  +  + L +   +    + G E ++     +
Sbjct: 862  QAPLLLAASMLVVFLVLAALYESWSIPVAVLLVVPLGVLGAVTAVLIRGGENDVFFKVGL 921

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +T+IG S  + +++ +  R    L          I ++    L   + TS+A  + V+P+
Sbjct: 922  ITIIGLSAKNAILMIEFAR---HLRDQGFGPCRAILQAARLRLRPILMTSLAFILGVVPL 978

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +    G  +  +    +  G++ A   ++F    + + +    A   R
Sbjct: 979  MLAHGAGSEIQNAIGTGVFGGMISATVLAVFFIPVLYILVSLRAAPFRR 1027


>gi|297570093|ref|YP_003691437.1| acriflavin resistance protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926008|gb|ADH86818.1| acriflavin resistance protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 1036

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 66/516 (12%), Positives = 148/516 (28%), Gaps = 42/516 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + ++L  +   IG +        +  +D  P                      +   
Sbjct: 10  RPVFTIMLTLIAVIIGAVSLA-----RLPIDLMPEVTYPTLT---------ISASYDNAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++  + +        +  +  + + +SFA     +  A+ +   L  V
Sbjct: 56  PEEVEELITRPIEQAVAAVSGIESINSNSSEGISNVRVSFAWGTDIDAAANDLRDRLDRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L  D  +  +         +++            +E    I  Q   +I        
Sbjct: 116 MNQLPDDISRPQVRKFDLSATPVLILGAASP---LDPLELRRLIDEQMSFRIERVAGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  ++       ++  L  T   +       N +          L  +      
Sbjct: 173 LDVWGGLEREIQVNLKADKIAALGLTLDGLRQALRDANITVPAGEIERGRLEVTLRTPGQ 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                E++   L                                   +      V     
Sbjct: 233 FTSLEELAATVLAV--------------------RDGAAITLDQVAEVVDTHRKVSRIVR 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      +     +   +              L          +           S    
Sbjct: 273 INHQPGVRLAVRKQPDANTVQVAREVLREVERLNRDFP-QVEIVPIIDFSEYIQRSIDNV 331

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +      L ++VL   +   +  LVA  +I + VI T AL+   G TL L ++ G+ L
Sbjct: 332 GRSLLYGGSLAVLVLLFFLRSMRSTLVAATAIPVAVISTFALIYFGGFTLNLMTLGGLAL 391

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           G+G+ VDS I+V E I    +++  +   + + G     + +    +T L+    + F  
Sbjct: 392 GVGMMVDSAIVVLENIARLRDKEKMAATQAAEQGTGEVAAAVIAGTLTTLVIFFPILFAQ 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R  A+ +G ++L S+ TA+++   +   +
Sbjct: 452 ELAGVLFRQLALVVGFALLASLITALTLTPMLAARL 487



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 56/154 (36%), Gaps = 11/154 (7%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++   +       L  +  + + +   +      G   N  +    + L+G  VN+ +++
Sbjct: 877  MVMASLYESLRDPLVVMFAVPMALIGVVLMLLFTGTTLNAQSYIGGIMLVGIVVNNAILL 936

Query: 741  YD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
             D   R+R          S  +   ++    L   + T++    ++LP+A+    G    
Sbjct: 937  VDQATRLR-----RDAGWSALEAAREAGRRRLRPILMTTLTTTFAMLPLALGLGEGSEQQ 991

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               A  +  G++ +   S+ +   +   +Y  R 
Sbjct: 992  APMARAVIGGLLSSTFISLLLIPVLYSLVYRNRQ 1025



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 82/249 (32%), Gaps = 5/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            L V     + L  V   +++ +      +        L   +    ++V   R +    
Sbjct: 243 VLAVRDGAAITLDQVAEVVDTHRKVSRIVRINHQPGVRLAVRKQPDANTVQVAREVLREV 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           +++    P   I         I R +   G   +   ++A+L+ ++        L A T 
Sbjct: 303 ERLNRDFPQVEIVPIIDFSEYIQRSIDNVGRSLLYGGSLAVLVLLFFLRSMRSTLVAATA 362

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T       G   NL  +  +   +G  V+  +VV + +          ++   
Sbjct: 363 IPVAVISTFALIYFGGFTLNLMTLGGLALGVGMMVDSAIVVLENI--ARLRDKEKMAATQ 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             ++   E     +  ++   +   P+       G +    A+ + F ++ +  +++ + 
Sbjct: 421 AAEQGTGEVAAAVIAGTLTTLVIFFPILFAQELAGVLFRQLALVVGFALLASLITALTLT 480

Query: 817 APILLFIYD 825
             +   +  
Sbjct: 481 PMLAARLVR 489


>gi|242241936|ref|ZP_04796381.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus epidermidis W23144]
 gi|242234611|gb|EES36923.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus epidermidis W23144]
          Length = 893

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 86/629 (13%), Positives = 198/629 (31%), Gaps = 58/629 (9%)

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
           H +   A+     H    D   ++   +   +   +       +        +  +N   
Sbjct: 64  HQDSEKASMKIVFHSNKNDGLNNKDTKKDIEDALDNIRQNDDYIQNISNPYDSGQVNDEG 123

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            +  A +S           +  +    L    +    +      G+ +   G  + + G+
Sbjct: 124 DTAIANVSYVVPQTGLKDSSKHIIDKELKDVTDNHNVQIEKTQGGAMNSEPGGTSEIVGI 183

Query: 373 VL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLA 427
           ++  ++L +         +   S  + +  ++ +++LL     +P+      +++G+ + 
Sbjct: 184 IVAFVILLITFGSLIAAGMPIISAIIGLGSSVGIIALLTYIFDIPNFTLTLAVMIGLAVG 243

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           +D ++ +  R +E  +K      ++      A S +  + +T +IA   L   G   +  
Sbjct: 244 IDYSLFILFRFKELKKKGVDTVEAIATAVGTAGSAVIFAGLTVMIAVCGLSLVGIDFLAV 303

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
                 +S+L ++  A++++ A++    +  K+K                  +       
Sbjct: 304 MGFASAISVLFAVLAALTLLPALISIFHKSIKIKDKPTKSKDPKDHSWAKFIVGKPVIAV 363

Query: 548 WGVGISILFSICSICLLFT--------------------HGLNYGIDFKGGIQLGVLANR 587
               I ++ +   +  +                         N+G  + G I + V    
Sbjct: 364 IVSLIILILAAIPVSGMRLGIPDDSLKPTDSSEYKAYKLISDNFGEGYNGQIVMLVNTKD 423

Query: 588 -------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                    DL+ +RS+LE +   D   +    + N        P           +V  
Sbjct: 424 GGSKSTIERDLNNMRSDLEDIDNVDTVSKAQLTDNNNYALFTIIPEKGPNSQSTENLVYD 483

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG--------IVGVIISAIAMLIYIWIRFKWYF 692
                       +        S   I           +   +I  +A  + + +      
Sbjct: 484 LRDYHSQAQEKYDYSTEISGQSVINIDMSEKLNNAIPVFAGVIVVLAFFLLMIVFRSILV 543

Query: 693 ALGAITTLILDITKTLGFF----------ALFGIEFNLT-----AVAAVLTLIGYSVNDK 737
            L A+   IL +  TLGF           +LFGIE          V  +  L G +++ +
Sbjct: 544 PLKAVLGFILSLMATLGFTTLVIQHGFMGSLFGIENTGPLLAFLPVITIGLLFGLAIDYE 603

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           + +  R+ +    Y+ +      I   I E+    V  ++  F   +       S I S 
Sbjct: 604 LFLMTRVHEE---YSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFVFQDDSAIKSM 660

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I + FG++  A        P L  ++  
Sbjct: 661 GIALGFGVLFDAFVVRMTLIPALTKLFGK 689


>gi|312131795|ref|YP_003999135.1| acriflavin resistance protein [Leadbetterella byssophila DSM 17132]
 gi|311908341|gb|ADQ18782.1| acriflavin resistance protein [Leadbetterella byssophila DSM 17132]
          Length = 1051

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 69/695 (9%), Positives = 198/695 (28%), Gaps = 53/695 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++++++ +   G+L            +  P   P                V    
Sbjct: 9   RRPSIVIVVFTALTLFGILS-----YFSLNYELLPKFSPSVV---------SISTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + L+       +  +  + + +        +   +     +  
Sbjct: 55  SPSEVENTVTKKIEDAVASLENIKKLDATSYESLSLVVIELRSGADVDLALNDAQRKINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L  D +   L   +  ++ I+                   I +Q    +       
Sbjct: 115 MLSELPDDAEAPSLNKFSFDDLPILTL---SATAQMDDASFYDLIDKQVQPILSRVPGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D ++L     +  ++    +                     N  
Sbjct: 172 QVNLVGGQEREIQVNIDANKLEGYNLSILQVQQAIL-------------------GANLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                ++     +    A       +    +  D     +       ++      V    
Sbjct: 213 FPTGSIKSDNQDILVRLAGKYKNVEELRNLVIADAPSGGQIRLGDIADVQDTQKDVEKIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +            ++  +     +     L+ + +  +       V        L S +
Sbjct: 273 RVNRKSSIALQVLKQSDANAVQVSQLTREILSKVEQQYAENDLKIAVANDTSEYTLKSAN 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +++   +   +  L+   SI +++I T   ++L+G +L + S+ G+
Sbjct: 333 AVVFDLFLAIVLVAVIMLFFLHSIRNSLIVMVSIPVSLIATFIGMNLMGFSLNMMSLLGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I       ++   +   G      T+    +  ++  + +   
Sbjct: 393 SLVVGILVDDAIVVIENIYRHMEMGKNKVRAAYDGAKEIGFTVISITLVIVVVFLPIAMS 452

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAM------MIFIIRYKKMKSIDINPLSRF 531
            G     +R F + + +S+L+S+ ++ +IV  +      +  I          +    + 
Sbjct: 453 TGIVADILREFCLVVVISVLLSLLSSFTIVPLLTSRFGKLEHIQPTNIFNRFILWFEEQL 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLL------FTHGLNYGIDFKGGIQLGVLA 585
                 I      A    +  S++  +            + +G  +    +G   L +  
Sbjct: 513 NKFTRWITSILEWALNHKLITSLVVIVMFFSSFLLVGAGYINGEFFPSSDRGEFYLQIEL 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +   +       +  +               + +       +++ T   E++ K + + 
Sbjct: 573 PKDAAIEQTNKITQEAEEYLSKKPEVANMITSVGQSSDGMVATLSPTYKAEILVKLVDKE 632

Query: 646 VPLSTIQNTEIVGPKISRELIRKG-IVGVIISAIA 679
                         +  ++++    I  + +S I 
Sbjct: 633 YREDDTDVYAAKTKQELQKVLVGAKIKALPVSFIG 667



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 74/195 (37%), Gaps = 7/195 (3%)

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYF 692
            V+   + K+  I   + +        ++  E      + +++S I +  I + +   +  
Sbjct: 829  VVAAWQPKLDSIPKPTGVSYVWSGDIEMQNEGFGTLGIAILMSVILVYFIMVALYNSFVH 888

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + ++ L +   L   AL     N+  +  ++ LIG    + +++ D      +L  
Sbjct: 889  PFVVLFSIPLAVIGALLALALTNNTLNIFTMLGMIMLIGLVAKNAIILVDF---TNQLKA 945

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               S R+ +  + +  L   + T++A    +LP+A+    G       A  +  G++ + 
Sbjct: 946  EGKSTREALILANHARLRPILMTTIAMVFGMLPIAMASGSGAESKNGLAWVIIGGLISSL 1005

Query: 810  SSSIFIAAPILLFIY 824
              ++ +   +     
Sbjct: 1006 FLTLIVVPVVYQLFD 1020



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/210 (10%), Positives = 71/210 (33%), Gaps = 11/210 (5%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +         +     +   + LQ          +V ++ ++ ++++       + +
Sbjct: 257 DIADVQDTQKDVEKISRVNRKSSIALQVLKQSDANAVQVSQLTREILSKVEQQYAENDLK 316

Query: 656 IVGPKISRELIRKGIVGVII----SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
           I     + E   K    V+     + + + + +         +L  + ++ + +  T   
Sbjct: 317 IAVANDTSEYTLKSANAVVFDLFLAIVLVAVIMLFFLHSIRNSLIVMVSIPVSLIATFIG 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             L G   N+ ++  +  ++G  V+D +VV + +    +      +          E   
Sbjct: 377 MNLMGFSLNMMSLLGLSLVVGILVDDAIVVIENI---YRHMEMGKNKVRAAYDGAKEIGF 433

Query: 771 RSVYTSMAAFISVLPMAVWGG---SVIGSF 797
             +  ++   +  LP+A+  G    ++  F
Sbjct: 434 TVISITLVIVVVFLPIAMSTGIVADILREF 463


>gi|256830714|ref|YP_003159442.1| acriflavin resistance protein [Desulfomicrobium baculatum DSM 4028]
 gi|256579890|gb|ACU91026.1| acriflavin resistance protein [Desulfomicrobium baculatum DSM 4028]
          Length = 1038

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 58/516 (11%), Positives = 140/516 (27%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL       + Q                                
Sbjct: 9   RRPVLALVINLLIILAGLQAIFSLSVRQYPRSDNAMVT--------------VTTTYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    +   +             Q  + I +    +        +++  +  
Sbjct: 55  SAELVRGFITTPLERAIAAADGIDYIQSQSAQNLSTINVRLKLNYDPIEALSEISAKVDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  +L   +           +         + +  ++R    ++       
Sbjct: 115 VRGDLPPEAEVPILNVESADSQFASAY-LSFTSPDLEQNQITDYLMRVIQPRLSALSGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  T A +       N            +        
Sbjct: 174 RADILGARTFAMRIWLKPDRMAALNVTPAAVRQALAANNYLSALGQTKGELV-------- 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++ ++      +   F          ++  E            ++           
Sbjct: 226 ----QINLTADTDLRSADEFKQ--------LAIREENGAVVRLGDIADVALGAEDYGAEV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             T               +    I         +++         +          +   
Sbjct: 274 RFTGETAVFIGVWPLPNANSIDVIGLVRTEMEAIQSTLPSGMKGRIAYDATEYINSAIHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++++F+ +   +  L+   +I L++I  + L+ + G T+ L ++  +V
Sbjct: 334 VLKTLGDTLLIVVVIIFLFIGSFRAVLIPVIAIPLSLIGAVFLMQIFGFTVNLLTLLAVV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +     + Q+   +  +G       +    IT       +   G
Sbjct: 394 LSVGLVVDDAIVVVENVERHISEGQTPLDAAILGARELIGPLIAMTITLAAVYAPIGLQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R FA T+  ++ IS   A+++   M   +
Sbjct: 454 GLTGSLFREFAFTLAGAVTISGIVALTLSPLMSAKL 489



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 75/190 (39%), Gaps = 10/190 (5%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
            +E ++  +   +      +          E+++     ++I  + + ++I     +   
Sbjct: 303 EMEAIQSTLPSGMKGRIAYDATEYINSAIHEVLKTLGDTLLIVVVIIFLFIG---SFRAV 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  +  + L +   +    +FG   NL  + AV+  +G  V+D +VV + +    +  + 
Sbjct: 360 LIPVIAIPLSLIGAVFLMQIFGFTVNLLTLLAVVLSVGLVVDDAIVVVENV---ERHISE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +  D       E +G  +  ++       P+ + G   GS+   FA  +A  + ++  
Sbjct: 417 GQTPLDAAILGARELIGPLIAMTITLAAVYAPIGLQGGLTGSLFREFAFTLAGAVTISGI 476

Query: 811 SSIFIAAPIL 820
            ++   +P++
Sbjct: 477 VAL-TLSPLM 485



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 80/259 (30%), Gaps = 18/259 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V     V + +             S   F       +          A   + +   K
Sbjct: 761  IHVTGPDGVLVPLSSVATIKETTVARSLNRFQQLNAVKISGVAVRPLDEALRFLEDEAVK 820

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI-TT 699
             + +   L    ++  +  + ++ L   G+  V+I  +    +   R  +    G++   
Sbjct: 821  ILPQGYVLDYTGDSRQLRTEGNKFLTAFGLAVVLIFLVLAAQFNSFRDPFVILAGSVPLA 880

Query: 700  LILDITKTL-------GFFALFGIEFNLTAV--AAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            +   +  T          F   G    +       ++TL+G    + +++     +    
Sbjct: 881  VFGSLIFTFLKMPDPNVAFWTAGWTTTMNIYSQVGLVTLVGLVSKNGILIV----EFANQ 936

Query: 751  YTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                  S R+ + ++    L   + T+ A      P+ +    G +   S  + +  GI 
Sbjct: 937  LQKLGRSKREAVHEAALTRLRPILMTTGATIAGHFPLTLVTGAGAAARNSIGLVLVGGIA 996

Query: 807  VAASSSIFIAAPILLFIYD 825
            +    ++FI   I + +  
Sbjct: 997  IGTLFTLFIIPSIYMLVAR 1015


>gi|311113686|ref|YP_003984908.1| protein-export membrane protein SecD [Rothia dentocariosa ATCC
           17931]
 gi|310945180|gb|ADP41474.1| protein-export membrane protein SecD [Rothia dentocariosa ATCC
           17931]
          Length = 564

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 106/533 (19%), Positives = 194/533 (36%), Gaps = 43/533 (8%)

Query: 2   RNNPWLVI--LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           R +P          +  + +L+A   F        + +        L LDL GG+ ++L 
Sbjct: 3   RRSPLAAARGALVSMVLLMILMAAGIFGTTQAGGSWGA-------KLALDLSGGTQMILS 55

Query: 60  VDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENI 111
              +           L+   + +R  +   G+    +       N + +S   +   E  
Sbjct: 56  PKVNGSNDTNVSQEQLKQAVEIIRQRVDGAGVSEAEVTTSFGSGNNVVVSVPGNISPET- 114

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
            + +          +             E             +        +  I  +  
Sbjct: 115 RELIQASANMTFRAVLQ-SSSPGTAVPEESRTPDDKLPKPTAEPQEDNGSDTNWITPELY 173

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            +    + +           +     DP +      T     F              G  
Sbjct: 174 KEFEAKDCSAG-------NNEDAEAADPKKAIVACSTDGNEKFIL------------GPV 214

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
            L  +D +      +    GI+    T N                         + ++  
Sbjct: 215 ELNGNDISTASHSQETSGQGINTGRWTVNI-EFNDSARETFKKVTTRLNAIRGQSPNDPR 273

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
              A++LDG+VL++PV    I  GK QI+GNF+ + A  LA  L+ G+LPI  +I  E+ 
Sbjct: 274 SRFAIMLDGKVLSSPVSQAVIADGKPQITGNFSEQEAKNLADQLKYGALPISFSIQSEQQ 333

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           + A LG++ +  G    + GL+L+ ++ +  Y   G V   S+ +  I++   + LLG  
Sbjct: 334 ISATLGAEQLKVGILTGLIGLLLVFVYSLFQYRLLGFVTMASLVVAGIISYEAIVLLGWA 393

Query: 412 LT----LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           L     L  +AG+++ IG   DS I+  ERIR+E R  +++  ++  G+ RA  TI  S 
Sbjct: 394 LNYRLSLAGVAGLIVAIGATADSFIVYFERIRDEIRAGRTIPAAVSHGWKRASRTILASK 453

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              L+A VVL+    G+V+GFA T+GL+ +  +          +  +   +  
Sbjct: 454 AVNLLAAVVLYVVSVGSVKGFAFTLGLTAIADLVVVYLFTHPALTLLANTRYF 506



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 52/152 (34%), Gaps = 8/152 (5%)

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN----LTAVAAVLTLIGYSVN 735
           + +Y   +++       + +L++    +     L G   N    L  VA ++  IG + +
Sbjct: 357 VFVYSLFQYRL-LGFVTMASLVVAGIISYEAIVLLGWALNYRLSLAGVAGLIVAIGATAD 415

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V ++R+R  ++      +    +           + +     ++ + + V     + 
Sbjct: 416 SFIVYFERIRDEIRA---GRTIPAAVSHGWKRASRTILASKAVNLLAAVVLYVVSVGSVK 472

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            FA  +    +           P L  + + R
Sbjct: 473 GFAFTLGLTAIADLVVVYLFTHPALTLLANTR 504


>gi|226940212|ref|YP_002795285.1| acriflavin resistance protein [Laribacter hongkongensis HLHK9]
 gi|226715138|gb|ACO74276.1| acriflavin resistance protein [Laribacter hongkongensis HLHK9]
          Length = 589

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 61/479 (12%), Positives = 129/479 (26%), Gaps = 35/479 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +  +G +           +   P         + L   GGS        
Sbjct: 10  RPIATTLLMVALFLVGAMS-----YRLLPVSALPEVDYPTIQVVTL-YPGGS-------- 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL FA     +    +V   +   
Sbjct: 56  PDVIATTITAPLERQFGQMPGLMQMSSSSSGGASVITLQFALDLNLDVAEQEVQAAMNAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L VD     + +      + +L+   +      A E    +  +   +I       Q
Sbjct: 116 ATLLPVDLPNPPVYSKVNPADAPILT-LAVTSATLPATELVDLVDTRVSQKIAQVSGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +  +   +  + +   L     T   +                        +     
Sbjct: 175 VNLNGALKPAVRIQVNTVALAARGLTLEDIRTAV--------------------NAANVN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  S        AN   K+      I                 +      +  G  
Sbjct: 215 QAKGELDSATRARIIDANDQLKSPDDYRRIVLGYQNGAALRLQDVARVSSAPENLRLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +     E    L   L++         V          S S  
Sbjct: 275 AGREPAVIINVQRQPGANVIAVAEEIKTLLPRLQSTLPESVHLRVLNDRTVTVQASVSEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +  G   L+   ++ L+++ T A++ L G ++   ++  + +
Sbjct: 335 RFELVLAIVLVVLVIFLFLRNGTATLIPAVAVPLSLVGTFAVMYLAGFSINNLTMMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
             G  VD  I++ E I     +  S   +   G  +   TI    ++ +   + L F G
Sbjct: 395 ATGFVVDDAIVMIENISRYLEEGDSPLQAALKGSGQIAFTIISLTLSLVAVLIPLLFMG 453



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 9/100 (9%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKL 750
           L     + L +  T     L G   N   + A+    G+ V+D +V+     R  +    
Sbjct: 360 LIPAVAVPLSLVGTFAVMYLAGFSINNLTMMALTIATGFVVDDAIVMIENISRYLEE--- 416

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
                S      K   +     +  +++    ++P+   G
Sbjct: 417 ---GDSPLQAALKGSGQIAFTIISLTLSLVAVLIPLLFMG 453


>gi|167742532|ref|ZP_02415306.1| RND transporter, HAE1/HME family protein [Burkholderia pseudomallei
           14]
          Length = 951

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 71/608 (11%), Positives = 182/608 (29%), Gaps = 42/608 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL   +        + ++P A+    IS+  D  G S  +++  
Sbjct: 22  RRPVLSLVFSLLILLVGLRALM-----SLPVRQYP-ALESATISVATDYPGASQELMQ-- 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 GF+     +  +          +  Q ++ +      +   +    +V   +Q 
Sbjct: 74  ------GFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQ 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     + +  ++R     +       
Sbjct: 128 VKYKLPADAYDSVITKLTDAPTAVMYLGFASDAL--SIAQITDYVVRVAQPLVTTVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D +RL     +   ++      N                     
Sbjct: 186 SAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANT 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D    +                   + +     G           +           
Sbjct: 246 DLTDVGAFN------------------EMVVKSAPNGGGLVRLKDVATVEIGGENYNSSA 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +   G +   +                      S + 
Sbjct: 288 LMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVQIANMFDGARFVNASIAE 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L+++ + AL+   G +L L ++  +V
Sbjct: 348 VRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMV 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +  +G     S +     T +     +   G
Sbjct: 408 LAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++L+S   A+++   +   ++  +       K+I+         
Sbjct: 468 GLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHA 527

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + + +   +            + +G I + V A +  +L  
Sbjct: 528 YRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDY 587

Query: 594 VRSNLESL 601
           +      +
Sbjct: 588 MERYAPDI 595



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 59/165 (35%), Gaps = 9/165 (5%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + I  + + +++     +   +  + T+ L +  +       G   NL  + A++  IG
Sbjct: 355 AIAIVVVVIFLFLG---SFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIG 411

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
             V+D +VV + +    +                 E     +           P+ + G 
Sbjct: 412 LVVDDAIVVVENIH---RHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGG 468

Query: 791 --GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GS+   FA  +A  ++V+   ++ ++  +   +   R    R+
Sbjct: 469 LTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRV 513


>gi|326329828|ref|ZP_08196148.1| protein-export membrane protein SecD [Nocardioidaceae bacterium
           Broad-1]
 gi|325952414|gb|EGD44434.1| protein-export membrane protein SecD [Nocardioidaceae bacterium
           Broad-1]
          Length = 571

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 104/548 (18%), Positives = 203/548 (37%), Gaps = 47/548 (8%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD- 64
             ++  ++    G +     + P+                LGLDLRGG+ + +  +  + 
Sbjct: 12  LALLFLAIAIMFGGIAFAGTWKPE----------------LGLDLRGGTEISMTAENSEG 55

Query: 65  --FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT-LSFAD-----SRFKENIADKVT 116
                  L      +   +   GI    +    N +  +S            E +     
Sbjct: 56  GSVPKESLDEAKAIIDQRVNGSGITGGRVTTEGNDVIKVSIPGTGKVQQETAERVRQTAK 115

Query: 117 LFLQGV----NSKLNVDPKKNLLVTTTEKEISIVLS--------QNNIDQVISHAIEQSM 164
           L  + V      +          +       ++  +        +       + A +++ 
Sbjct: 116 LRFRLVACSPQKQCGAGADAGGSMIEDPSTGTVPGTSPRAPFGGETVSPTETASASDKAS 175

Query: 165 EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLPNN 221
           +   ++  +     ++       +    +    D     R       TA  SF    P  
Sbjct: 176 DKASEKPSEGASPSASASAKPEKQNDNAVVKVDDAVEFMRNVPQEWATAYNSFSCPAPGA 235

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281
                + G   L   +     +     I G  ++ A+     +    VV + F   G + 
Sbjct: 236 EPAEDIPGKPLLTCDNDGVPYLLTPAVIEGTEIDEASYGIPQQQANYVVTLDFKSKGNKV 295

Query: 282 FFEVTRDNIGKPLAVVLD-GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR--AG 338
           F + T    G      +     + +     +  SG AQISG+FT E+A  LA  L+  + 
Sbjct: 296 FADTTGAIAGTGEQFAIVLDAKVISAPTADSRISGGAQISGDFTQESAASLANNLKYGSL 355

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
            L    + ++ R +G  L  + +  G  A + GL+L+V+F ++ Y    +V   S+ +  
Sbjct: 356 PLDFPDDGIQTRVIGPSLAGNQLTAGLWAGLIGLILVVIFSVLYYRAMSIVVIGSLIVAG 415

Query: 399 ILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
             T  ++ LL      TL LP +AG+++GIG+  DS I++ ER+R++ R+ +S+  ++D 
Sbjct: 416 AGTYGMILLLSETAGVTLDLPGVAGLIVGIGITADSFIILYERMRDDMREGRSMRVAVDT 475

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + RA +T   S+  + +A  VL+ F    V+GFA  +GL+ LI +         M   +
Sbjct: 476 AWVRARNTCLASDGVSFLAAFVLYVFATNEVKGFAFMLGLTTLIDVLVFFWFTHPMTKLM 535

Query: 515 IRYKKMKS 522
             +     
Sbjct: 536 AGWGFFNK 543



 Score = 97.8 bits (241), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 92/248 (37%), Gaps = 8/248 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V A+    ++        +    +        +              +   +   +K   
Sbjct: 295 VFADTTGAIAGTGEQFAIVLDAKVISAPTADSRISGGAQISGDFTQESAASLANNLKYGS 354

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +        T ++GP ++   +  G+   +I  I ++I+  + ++   ++  I +LI+
Sbjct: 355 LPLDFPDDGIQTRVIGPSLAGNQLTAGLWAGLIGLILVVIFSVLYYR-AMSIVVIGSLIV 413

Query: 703 DITKTLGFFALF----GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
               T G   L     G+  +L  VA ++  IG + +  +++Y+RMR +M+      S R
Sbjct: 414 AGAGTYGMILLLSETAGVTLDLPGVAGLIVGIGITADSFIILYERMRDDMRE---GRSMR 470

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +D +        + +   +F++   + V+  + +  FA  +    ++      +   P
Sbjct: 471 VAVDTAWVRARNTCLASDGVSFLAAFVLYVFATNEVKGFAFMLGLTTLIDVLVFFWFTHP 530

Query: 819 ILLFIYDW 826
           +   +  W
Sbjct: 531 MTKLMAGW 538


>gi|91793546|ref|YP_563197.1| acriflavin resistance protein [Shewanella denitrificans OS217]
 gi|91715548|gb|ABE55474.1| acriflavin resistance protein [Shewanella denitrificans OS217]
          Length = 1095

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 67/513 (13%), Positives = 149/513 (29%), Gaps = 41/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    I   G++      +       +PS                   + +  
Sbjct: 9   KRPVTVWMFMLAIMLFGMVGFSRLAIKLLPDLSYPSVT--------------IRTLYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  + +V   +  
Sbjct: 55  APVEVEQLISKPLEESVGVVKGLRKISSISRSGLSDVVLEFEWGVDMDLASLEVREKIDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISEST 180
           +  +L +D  K LL+        I+    ++    +  ++Q       +   ++      
Sbjct: 115 I--ELPLDINKPLLLRFNPNLDPIMRLAFSVPDANAEQLKQMRTFADEELKRRLEALPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++    +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQEVHILLNQQKLAQLNLNADDVKRRINEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I G             + + +  +     G           I        D 
Sbjct: 213 INLSAGKVIQGDKEYLVRTLNQFNSLEELGQVIIYRDGQTLVRLNDVAQIQDAYKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +        + +     +L  +          + S
Sbjct: 273 TRIGSVESIELAIYKEGDANTVAVAQKLKSELDAINSADNGHQL-NIVYDQSEFIQSAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSAALFGSLLAMLVIYLFLKDIIATLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L IGL VD+ I+V E I     +      +   G S     IF S +T L   + L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRYKSQGMDKVTAAVTGCSEVAGAIFASTLTTLAVFLPLVFV 451

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
               G      A+T+  ++L S+F A++ +  +
Sbjct: 452 DGIAGALFADQAMTVTFALLASLFVAMTAIPML 484



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 80/251 (31%), Gaps = 4/251 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + +       V L+ V    ++ +      +    E   L   +    ++VA  + L+
Sbjct: 242 GQVIIYRDGQTLVRLNDVAQIQDAYKERSDITRIGSVESIELAIYKEGDANTVAVAQKLK 301

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
                I        +         I   +       +  S +AML+           L  
Sbjct: 302 SELDAINSADNGHQLNIVYDQSEFIQSAVSEVTSAALFGSLLAMLVIYLFLKDIIATLII 361

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  + 
Sbjct: 362 SISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRYKSQGMD 418

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                    +E  G    +++      LP+    G     FA   A  +  A  +S+F+A
Sbjct: 419 KVTAAVTGCSEVAGAIFASTLTTLAVFLPLVFVDGIAGALFA-DQAMTVTFALLASLFVA 477

Query: 817 APILLFIYDWR 827
              +  +   +
Sbjct: 478 MTAIPMLASRQ 488



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 72/192 (37%), Gaps = 7/192 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +          +  +   +  + ++   S++Q       +  +       + +++
Sbjct: 860  QQRVAIVSSNLAYGDLSEAVMEAEAILAQLQLSSSVQARFGGQNEEMKHSFDSLKIALVL 919

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    + G   ++     ++ L G  V
Sbjct: 920  AVFLVYLVMASQFESLLHPLLILIAVPMALGGSIIGLYITGTHLSVVVFIGLIMLAGIVV 979

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+    +L          I  + +  L   + T++   + +LPMA+    G 
Sbjct: 980  NNAIVLVDRIN---QLRRDGQDKHSAIIDAASSRLRPILMTTLTTTLGLLPMAIGIGDGS 1036

Query: 792  SVIGSFAIPMAF 803
             V    AI + F
Sbjct: 1037 EVRAPMAITVIF 1048


>gi|75675457|ref|YP_317878.1| acriflavin resistance protein [Nitrobacter winogradskyi Nb-255]
 gi|74420327|gb|ABA04526.1| Acriflavin resistance protein [Nitrobacter winogradskyi Nb-255]
          Length = 1044

 Score =  144 bits (361), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 75/611 (12%), Positives = 160/611 (26%), Gaps = 45/611 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I  IGL+       P   +   P                     L   
Sbjct: 11  RYPIGTSLLMAGILFIGLVA-----FPLLPVAPLPQVDFPTIQ---------VQANLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        +       IT+ F  +R  +  A+ +   +  
Sbjct: 57  SPETMASSVAQPLERQMAQIPGVAQMTSTSSIGSTSITVQFDLNRNIDGAANDIQRAINA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              S ++   +           S     Q   QI       
Sbjct: 117 AGGQLPKNLPSPPTYRKVNPADSPIML-LSATSDTLPLTTVSDNTDTQLAQQISQISGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q +   +    +  + DP++L     +   +     +                       
Sbjct: 176 QVIIGGQQKPSIRIQIDPAKLVAKGLSLEDVRNQISV--------------------TTV 215

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G       AN      K   D+                             
Sbjct: 216 NSPKGSIDGGTRSYTIYANDQLTLSKDWGDVIIAYRNGAPLRIRDIGQAVTGPEDNKQAA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I   +   +   T++        L A   P     +          +   
Sbjct: 276 WANGKRGVFLIIFKQPGANVIDTVDRIKAELPRLIAAIPPAIKIDLISDRTTTIRAAVED 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +      ++   ++ L ++   AL+     +L   S+  + 
Sbjct: 336 VQFTLLITVVLVVLVIFLFLRNFWATIIPSVTVPLALLGACALMWPFDYSLNNLSLMALT 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E I     K +    +   G      TI   +I+ +   + L   G
Sbjct: 396 ISVGFVVDDAIVVLENISRHVEKGEEPMAAALKGAREIGFTILSISISLVAVLIPLLLMG 455

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ ++IL+S+  ++++   M    +R                     +
Sbjct: 456 GIIGRLFREFAVTLAMAILVSLVVSLTLTPMMASRFLRRHDSVRHGRLYRLSERGFDAML 515

Query: 539 AIQFMR-------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                         R   +   +   +     +      +     G I     A + +  
Sbjct: 516 DAYRRGLDLVLRWRRTTLLVFFMTLGLSVYLFVIIPKGFFPQQDNGMILGTSEAAQDISF 575

Query: 592 SVVRSNLESLQ 602
           + ++   E L 
Sbjct: 576 AEMKKKQEELG 586



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 8/145 (5%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +    T+ L +         F    N  ++ A+   +G+ V+D +VV + +    +    
Sbjct: 362 IIPSVTVPLALLGACALMWPFDYSLNNLSLMALTISVGFVVDDAIVVLENI---SRHVEK 418

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
                    K   E     +  S++    ++P+ + GG +      FA+ +A  I+V+  
Sbjct: 419 GEEPMAAALKGAREIGFTILSISISLVAVLIPLLLMGGIIGRLFREFAVTLAMAILVSLV 478

Query: 811 SSIFIAAPILLFIYDW--RAKNARI 833
            S+ +   +           ++ R+
Sbjct: 479 VSLTLTPMMASRFLRRHDSVRHGRL 503



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 87/215 (40%), Gaps = 6/215 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   + + +   ++ +       V   + E+    T+  +     +  ++ +    + +
Sbjct: 804  GQFPAITISFNLAENASLGDATAAVHNAMRELGAPGTLNGSFQGTAQAFQQSLGTVPLLI 863

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + + + + I ++ +   +  ++TL       L    LFG +F+L A+  ++ LIG 
Sbjct: 864  LAALVVVYLILGILYESYIHPITILSTLPSAGVGALATLMLFGYDFSLIALIGIILLIGI 923

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D            +   + I K+        + T+MAA +  +P+ +    
Sbjct: 924  VKKNGIMMVD--FAIAAEREEHLPPEESIRKAALLRFRPIMMTTMAAMLGGVPLMLGTGA 981

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            G  +       M  G++V+ + ++F    + L++ 
Sbjct: 982  GSEIRQPLGYAMVGGLLVSQALTLFTTPVVYLYLD 1016


>gi|152987543|ref|YP_001348070.1| RND efflux transporter [Pseudomonas aeruginosa PA7]
 gi|150962701|gb|ABR84726.1| probable RND efflux transporter [Pseudomonas aeruginosa PA7]
          Length = 1036

 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 65/555 (11%), Positives = 159/555 (28%), Gaps = 32/555 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FGLLPVAPLPNVDFPAIV---------VSASLPGASPETMASSVATPLERSLGRIAGISE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S       + L F   +  +  A +V   + G  S L      N            +
Sbjct: 80  MTSSSSLGSTTVVLVFDLEKDIDGAAREVQAAINGAMSLLPSGMPNNPSYRKANPSDMPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    +        E           ++       Q       L  +  + +P  + Q  
Sbjct: 140 MV-LTLTSETQSRGEMYDLASTVLAPKLSQVRGVGQVSIGGSSLPAVRVDLNPDAMSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N++                    +    E                  
Sbjct: 199 LSLDSVRTAIAAANSNGPKGAIEKDDKHWQVDANDQLRKARE------------------ 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
              + I ++              I   +  V +            I + +   +     +
Sbjct: 241 YQPLVIHYNAENGAAVRLGDVAKISDSVEDVRNAGFSDDLPAVLLIVTRQPGANIIEATD 300

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                  +L+    P     V +    +   S +  + T  I   LV++V+F+ +  G+ 
Sbjct: 301 AIHAQLPVLQELLGPQVKLNVMDDRSPSIRASLAEAELTLLISVALVILVVFLFLRNGRA 360

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ +++I T A++ L   +L   S+  +++  G  VD  I+V E I     +  
Sbjct: 361 TLIPSLAVPVSLIGTFAVMYLCDFSLNNLSLMALIIATGFVVDDAIVVVENIARRIEEGD 420

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
               +   G  +   T+    ++ +   + L   G   G   R FA+T+  +IL+S+  +
Sbjct: 421 PPIQAAITGARQVGFTVLSMTLSLVAVFIPLLLMGGLTGRLFREFAVTLSAAILVSLVVS 480

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +++   +   +      +    +   R         +++  +  W +  S L  +  +  
Sbjct: 481 LTLTPMLCARL-LRPLKRPQGASLARRGDRFFSAFMLRYRASLGWALEHSRLMVVIMLAC 539

Query: 564 LFTHGLNYGIDFKGG 578
           +  +   + +  KG 
Sbjct: 540 IAMNLWLFVVVPKGF 554



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 70/217 (32%), Gaps = 6/217 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +V  Q       A   +   +      + P   +   +   P I   L    +  +I  A
Sbjct: 286 IVTRQPGANIIEATDAIHAQLPVLQELLGPQVKLNVMDDRSPSIRASLAEAELTLLISVA 345

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           L     + + +  T     L     N  ++ A++   G+ V+D 
Sbjct: 346 LVILVVFLFLRNGRATLIPSLAVPVSLIGTFAVMYLCDFSLNNLSLMALIIATGFVVDDA 405

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +                 +     +  +++     +P+ + GG      
Sbjct: 406 IVVVENI---ARRIEEGDPPIQAAITGARQVGFTVLSMTLSLVAVFIPLLLMGGLTGRLF 462

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I+V+   S+ +   +   +     +  
Sbjct: 463 REFAVTLSAAILVSLVVSLTLTPMLCARLLRPLKRPQ 499


>gi|307823119|ref|ZP_07653349.1| acriflavin resistance protein [Methylobacter tundripaludum SV96]
 gi|307735894|gb|EFO06741.1| acriflavin resistance protein [Methylobacter tundripaludum SV96]
          Length = 1038

 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 67/608 (11%), Positives = 157/608 (25%), Gaps = 44/608 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G+L  L        +   P       I+            L    
Sbjct: 10  RPVATSLLTLAIVLAGILAFL-----NLPVSSLPQVDFPT-IN--------VQAQLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S  Q  ++ITL F   R     A  V   +   
Sbjct: 56  AETMAATVATPLERALGRIAGITEMTSSSSQGSSQITLQFDLDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 S +L    +        +           +I       Q
Sbjct: 116 ASLLPTSMPNRPSYRRDNPSDSPILI-LALTSDTLSRGQMYDAASTILAQKISQIPGIGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P+ L +       +                              
Sbjct: 175 VQIGGAALPAVRVELNPNALTKYGIGLEDVRNTIT--------------------QTNIS 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V  +        AN   +     + +                 +   +  + +  +
Sbjct: 215 RPKGVLENDEQRWQIQANDQARKAADYLPLIVSYRNGAPVRIADLGEVVDSVEDLRNTGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   T++    L   LRA         V          S +  
Sbjct: 275 KNGKQSVLLILRKQPLANVIQTVDQVQALLPELRASIPSAIDLSVVIDRSLTIRASITEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +  I   LV++V+ + +   +  LV   ++  +++   A +     +L   ++  + +
Sbjct: 335 EHSLLIAIVLVILVVLVFLRDLRSTLVPIIAVPASLLGACAAMYFFNYSLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E       K  + F +  +       T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENTSRHIEKGVAPFKAALLAAKEVGFTVMAMSVSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------IDINPLSRFFL 533
             G   R FA+T+  ++L+S+  ++++   +    +  +  +       I          
Sbjct: 455 VVGRLFREFAVTLSAAVLVSLLISLTVTPMLCARWVGRESPQHGRIYQGIGRAFDRVQGA 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R   + +     +            +     G +   V  ++      
Sbjct: 515 YESSLRWALRHGRIMMLILLGTIGLNVYLYTIIDKGFFPTQDGGRLLGEVQTDQGTSFWA 574

Query: 594 VRSNLESL 601
           ++     +
Sbjct: 575 LQKKFFEI 582



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 6/148 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L  I  +   +         F    N   + A+    G+ V+D +VV +   
Sbjct: 352 FLRDLRSTLVPIIAVPASLLGACAAMYFFNYSLNNLTLMALTIATGFVVDDAIVVLEN-- 409

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +     ++       +  E     +  S++     LP+ + GG V      FA+ ++
Sbjct: 410 -TSRHIEKGVAPFKAALLAAKEVGFTVMAMSVSLVAVFLPILLMGGVVGRLFREFAVTLS 468

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++V+   S+ +   +        +  
Sbjct: 469 AAVLVSLLISLTVTPMLCARWVGRESPQ 496



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 94/237 (39%), Gaps = 8/237 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L      +         +     L +      + +   ++++K + +I   + +Q + 
Sbjct: 789  SALAGFAPTNTPLSVNHQGQFAAATLSFNLKPGTSLSTATQLIEKTMRDIGVPNAVQGSF 848

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFAL 713
                K  +E +R     ++ +  ++ I + + ++ Y     I + +    +   L   A 
Sbjct: 849  QGSAKAFKESLRNQPFLILAALFSIYIVLGVLYESYIHPLTILSTLPSAGVGALLALMA- 907

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G EF++ A+  V+ LIG    + +++ D            +  R+ I ++        +
Sbjct: 908  CGTEFSIIALIGVILLIGIVKKNAIMMID--FALYAEREHGLDSREAIFQACLLRFRPIM 965

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             T++AA    LP+A+   +G  +     I +  G++ +   +++    + L++  +R
Sbjct: 966  MTTLAALFGALPLALGTGYGAELRQPLGISIVGGLIFSQMLTLYTTPVVYLYLDRFR 1022


>gi|119952942|ref|YP_945151.1| acriflavin resistance plasma membrane protein [Borrelia turicatae
           91E135]
 gi|119861713|gb|AAX17481.1| acriflavin resistance plasma membrane protein [Borrelia turicatae
           91E135]
          Length = 1061

 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 80/645 (12%), Positives = 194/645 (30%), Gaps = 42/645 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  + +         +  +D  P+              G S++ +    
Sbjct: 13  KPITMLILFSLLMMLSIYT-----FSRLKIDLLPNI-------------GDSYITISTQY 54

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  ++     L       +K       S  +  + I L F      +   +++   
Sbjct: 55  SGSSAKEVEEKVTSLLEGNLSLVKNIKTITSSSFKGHSSINLQFYHGTNLDLALNEIRDA 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+     L  +     +   +     I+      D+ +   +E           ++    
Sbjct: 115 LEISKRILPKEASLPRIYRGSLGSSPIISFVMYADRPV---LELKRYADNILKPRLERLN 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +          +  E   +RL     T +++       N                  
Sbjct: 172 GVGRVQVIGGGGKHILIEVLQNRLEAYGLTLSEIVPFISSQNVEFSVGNMLDN------- 224

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +E +V++SG   +          ++     S  +    +       ++      V 
Sbjct: 225 ---DLEYQVQVSGKFNSIKDLENVVIAYRKPSIYSLGDNSFVQVRLRDIASVKSVAQDVE 281

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D                ++  +  F  +        ++          +   +      +
Sbjct: 282 DYAYYNDKPSIVISIQKQSDANSVFVSDAVNAEVEKIKLALPKDIFLDISYDDAEHIKKA 341

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            S    +    A L L ++F  +   +  ++   +I L ++LT  L+     +L + S++
Sbjct: 342 ISSVANSAYSGAVLALCIIFFFLRSFRATIIIGITIPLAIVLTFCLMYFANISLNVMSLS 401

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+ L +G+ VD +I+V E I +  +K   +  S  +G       I  + +T++     + 
Sbjct: 402 GLALSVGMLVDCSIVVIENIYKYRQKGAKLISSAILGTQEMILPIMTATLTSICVFAPML 461

Query: 479 FFG------GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            F       G  VR FA T+ +S++ S+F A+ +V  +  + +         I       
Sbjct: 462 IFKAELGVIGDFVRDFAFTIVISLVASLFVAVFLVPVLSSYYVGLYTTSQKPIKNKLIKR 521

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +      I F+  RF+   ++       +         + +       L V        S
Sbjct: 522 IDDFLYGIYFVGERFYVKLLN-YVLTWKLACSLIILFIFILSLVLFPLLNVSFLPYERSS 580

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           ++R + +      +    F  +K   +            + +   
Sbjct: 581 LIRFDFKFPHKTSLKIAKFYSDKILEIVKNEIKVYKSIVSEINSN 625



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 81/261 (31%), Gaps = 17/261 (6%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       +  V  ++E     +         +           D  A    +E +K 
Sbjct: 263 VQVRLRDIASVKSVAQDVEDYAYYNDKPSIVISIQKQSDANSVFVSD--AVNAEVEKIKL 320

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            + + + L    +      K    +      G +++   +  ++     +   +    T+
Sbjct: 321 ALPKDIFLDISYDDAEHIKKAISSVANSAYSGAVLALCIIFFFL---RSFRATIIIGITI 377

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L I  T        I  N+ +++ +   +G  V+  +VV + +    K           
Sbjct: 378 PLAIVLTFCLMYFANISLNVMSLSGLALSVGMLVDCSIVVIENI---YKYRQKGAKLISS 434

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSIF 814
                 E +   +  ++ +     PM ++       G  +  FA  +   +V +   ++F
Sbjct: 435 AILGTQEMILPIMTATLTSICVFAPMLIFKAELGVIGDFVRDFAFTIVISLVASLFVAVF 494

Query: 815 IAAPI---LLFIYDWRAKNAR 832
           +   +    + +Y    K  +
Sbjct: 495 LVPVLSSYYVGLYTTSQKPIK 515



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 64/157 (40%), Gaps = 7/157 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + ++ + +   +  +F+ +      + T+ L +   + F+ + G + ++     +L LIG
Sbjct: 877  MFMAVLLVFGVMAAQFESFLKPFVILFTIPLTLIGVVPFYFISGEKVSVFTAIGMLMLIG 936

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
              VN  +V+ D +     L     + +D + ++        + +++ + I + P+A    
Sbjct: 937  VVVNTGIVLVDYIN---LLLKRGFNLKDAVLEAGRSRFRPILMSALTSIIGLFPLAFSSS 993

Query: 792  S---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            S   ++   A     G+V +   ++     I    Y 
Sbjct: 994  SESNLVKPIAFTFIGGMVASTFLTLLFIPMIFEIFYK 1030


>gi|322421055|ref|YP_004200278.1| acriflavin resistance protein [Geobacter sp. M18]
 gi|320127442|gb|ADW15002.1| acriflavin resistance protein [Geobacter sp. M18]
          Length = 1026

 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 62/520 (11%), Positives = 148/520 (28%), Gaps = 38/520 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL       +    + ++P       I+           V     
Sbjct: 10  RPVLAIVVSLVIVIAGL-----QAMRTLKVRQYPR-SENAIIT--------VTTVYVGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V GF+    +   +                + I++    +        ++   +  V
Sbjct: 56  PELVRGFVTTPLERSIAAADGIEYMESQSTLGLSTISVRLKLNFDSTRALAEIGSKVDQV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  + +   +   T          +    ++    E +  ++R    ++   E   +
Sbjct: 116 RRDLPPEAEVPTINIETADSRFAAAYLSFSSDLLKQ-NEITDYLVRVVQPRLSAVEGVQR 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +     P RL  L  T A++       N           +++ +      
Sbjct: 175 AEILGARTFAMRIWLKPERLAALNVTPAQVREALAANNFLSALGRSKGSYIQVNLTANTN 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                       +   +++    G          ++            
Sbjct: 235 LSS--------------------VEEFRNLALKSSGTSIVRLGDVADVVLGAEDYDTEVR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            +               +    I+      A +           +          +    
Sbjct: 275 FSGQTAVFMGIWPLPNANSLDVIKLVRREMAGIERDLPTGLKARIAYDATSYISDAVREV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +V+IV+F+ +   +  +V   +I +++I  + L+   G T+ L ++  IVL
Sbjct: 335 LKTLGDTLLIVVIVIFLFLGSLRSVVVPVVAIPVSLIGGVFLMQAFGFTINLLTLLAIVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +GL VD  I+V E +     + +S   +   G       I    +T     + +   G 
Sbjct: 395 SVGLVVDDAIVVVENVERHISEGESPLDAALSGARELVGPIIAMTVTLAAVYLPIGLQGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
             G   R FA T+  ++ IS   A+++   M   +++   
Sbjct: 455 LTGALFREFAFTLAGAVTISGIVALTLSPLMSATLLKPGM 494



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 87/239 (36%), Gaps = 8/239 (3%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              V L  V   +   +  D   +       F+        +S+   +++      I   
Sbjct: 251 TSIVRLGDVADVVLGAEDYDTEVRFSGQTAVFMGIWPLPNANSLDVIKLVRREMAGIERD 310

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
           +P                + +R+ +  +  + + ++I I++        +  +  + + +
Sbjct: 311 LPTGLKARIAYDATSYISDAVREVLKTLGDTLLIVVIVIFLFLGSLRSVVVPVVAIPVSL 370

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              +     FG   NL  + A++  +G  V+D +VV + +    +  +   S  D     
Sbjct: 371 IGGVFLMQAFGFTINLLTLLAIVLSVGLVVDDAIVVVENV---ERHISEGESPLDAALSG 427

Query: 765 INETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             E +G  +  ++      LP+ + G   G++   FA  +A  + ++   ++   +P++
Sbjct: 428 ARELVGPIIAMTVTLAAVYLPIGLQGGLTGALFREFAFTLAGAVTISGIVAL-TLSPLM 485



 Score = 46.2 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 62/184 (33%), Gaps = 25/184 (13%)

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI---------- 716
            K +    ++ + + + +  +F  +      +   +       G      +          
Sbjct: 843  KFLPAFALAIVLIFLVLAAQFNSFRDPFVILAGSVP--LAMFGALIFTFLKMPDPNVPFW 900

Query: 717  ------EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                    N+ +   ++TL+G    + +++ +      KL    +S  D + ++    L 
Sbjct: 901  TSGWTTTMNIYSQVGLVTLVGLVSKNGILIVEFAN---KLQLQGLSKLDAVRQAAMTRLR 957

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              +  + A      P+ +    G +   S  + +  G+ +    ++F+   I + I    
Sbjct: 958  PILMVAAATIAGHFPLTLVSGAGAAARNSIGLVLVGGMFIGTMFTLFVVPSIYMLIAKDH 1017

Query: 828  AKNA 831
            +++ 
Sbjct: 1018 SRDR 1021


>gi|319426674|gb|ADV54748.1| acriflavin resistance protein [Shewanella putrefaciens 200]
          Length = 1083

 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 67/513 (13%), Positives = 144/513 (28%), Gaps = 41/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++        +  +   P                      +  
Sbjct: 9   KRPVTVWMFMLAVILFGMV-----GFSRLAVKLLPDLSYPTLT---------IRTTYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 55  APVEVEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISEST 180
           +   L +D KK LL+        I+    ++  V    ++Q       +   ++      
Sbjct: 115 I--ALPLDVKKPLLLRFNPNLDPIMRLALSVPNVSEAELKQMRTYADEELKRRLEALSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++    +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQKVHILLNQEKLSQLNLNADDIKRRINEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I G             + + +  +                 I        D 
Sbjct: 213 INLSAGKVIQGDREYLVRTLNQFNSLEELGQVIVYRDEQNLVRLFEVATISDAYKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +      A +           V          + S
Sbjct: 273 TRIGSQESIELAIYKEGDANTVAVAKKLRDELAKINQ-DPKQNKLEVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  + + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALMGSVLSMLVIYLFLRNIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L IGL VD+ I+V E I     +  S   +   G       IF S +T L   + L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRCRSEGMSKLDAAVTGTKEVAGAIFASTLTTLAVFIPLVFV 451

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
               G      A+T+  ++L S+  A++ +  +
Sbjct: 452 DGIAGALFSDQALTVTFALLASLLVALTSIPML 484



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 66/220 (30%), Gaps = 6/220 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++     +L  +                        + L            V + ++ +
Sbjct: 244 VIVYRDEQNLVRLFEVATISDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKKLRDE 303

Query: 642 ITEIVPLSTIQNTEIVGPK---ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           + +I         E++  +   I   +       ++ S ++ML+           L    
Sbjct: 304 LAKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSVLSMLVIYLFLRNIIPTLIISI 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  +S  
Sbjct: 364 SIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRCRSEGMSKL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           D       E  G    +++      +P+    G     F+
Sbjct: 421 DAAVTGTKEVAGAIFASTLTTLAVFIPLVFVDGIAGALFS 460



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/215 (13%), Positives = 79/215 (36%), Gaps = 7/215 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V L          +  +   +  +++ V  +++Q       +      +   + +I+
Sbjct: 856  QQRVALVSANLAYGDLSDAVATAQDILSQQVLPASVQARFGGQNEEMEHSFQSLKIALIL 915

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    L     ++     ++ L G  V
Sbjct: 916  AIFLVYLVMASQFESLLHPLLILFAVPMALGGSILGLYLTQTHLSVVVFIGLIMLAGIVV 975

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+ +        +     I  +    L   + T++   + +LPMA+    G 
Sbjct: 976  NNAIVLVDRINQLRSEGVQRL---HAISVAAKSRLRPIMMTTLTTTLGLLPMALGLGDGS 1032

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             V    AI + FG+ ++   ++ +   +       
Sbjct: 1033 EVRAPMAITVIFGLSLSTLLTLIVLPVLYALFDRK 1067


>gi|157960186|ref|YP_001500220.1| acriflavin resistance protein [Shewanella pealeana ATCC 700345]
 gi|157845186|gb|ABV85685.1| acriflavin resistance protein [Shewanella pealeana ATCC 700345]
          Length = 1030

 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 75/621 (12%), Positives = 183/621 (29%), Gaps = 44/621 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R       +  +I  +G   AL +   +   +   + +  +    G D            
Sbjct: 9   RRPVLAASISFLILLLG-FYALKSMQVREYPEMTNTVVTISTSYYGAD------------ 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    ++  +                +KIT+    +         +   +  
Sbjct: 56  -SNLIQGFITQPLEQALAQADNVDFMTSDSFLGSSKITVYMKLNTDPNGALADILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T  + S +      DQ+ S   + +  + R    ++   +   
Sbjct: 115 VRSQLPKEAEDPTVEMSTGSQTSALYISFYSDQINSS--QITDYLERVVKPELFTIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I   +    DP+R+     ++  +       N           F   +     
Sbjct: 173 KVNLYGGIKYAMRIWLDPARMGAFNLSSTDVMSVLQANNYQSAVGQTNNTFTLLNGTADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+                      +                 +    +  +   
Sbjct: 233 QVATVAELE--------------------KLVIGSKNGLVIRLGDIATVNLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +       A  +   +           +   +  A   S + 
Sbjct: 273 LADGQEAVVVGLDVTPTANPLVVAADARAMMPQIERNLPVTMKTRILYDSSLAIDESINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +V++V+ + +   +  ++   +I L++I    ++ + G TL L ++  +V
Sbjct: 333 VIKTIGEAALIVIVVITLFLGSLRAVIIPIVTIPLSLIGVAIIMQMFGFTLNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  ++ F +  +G       +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVDRHIKLGETPFRAAIIGTREIAVPVISMTITLAAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G   + FA+T+  ++ IS   A+++   M   I        +  +S++         
Sbjct: 453 GVTGSLFKEFALTLAGAVFISGIVALTLSPMMCSKILKAHSEPNRFERSVENFLEGLTSR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     +         I+F+   +   F        + K  + +   A    +L  
Sbjct: 513 YNRMLTAVLDKRPVIIGFAIIVFASLPVMFSFIPSELAPNEDKSVVMMMGTAPSSANLDY 572

Query: 594 VRSNLESLQIGDISFQNFDGE 614
           +++N+  +     +       
Sbjct: 573 IQANMTLVTDMISAQPEAAAS 593



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 6/146 (4%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + I +++           +  I T+ L +        +FG   NL  + A++  IG  V
Sbjct: 340 AALIVIVVITLFLGSLRAVIIPIVTIPLSLIGVAIIMQMFGFTLNLMTLLAMVLAIGLVV 399

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +VV + +    +      +          E     +  ++       P+A+ GG   
Sbjct: 400 DDAIVVVENV---DRHIKLGETPFRAAIIGTREIAVPVISMTITLAAVYAPIALMGGVTG 456

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAA 817
                FA+ +A  + ++   ++ ++ 
Sbjct: 457 SLFKEFALTLAGAVFISGIVALTLSP 482



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 70/183 (38%), Gaps = 11/183 (6%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDI---TK 706
             + + +G           +     ++   + + +  +F+     L  + ++ L I     
Sbjct: 830  YSYDFLGEARQYVTEGSALYATFGLALAIIFLVLASQFESLKDPLVILVSVPLAISGALV 889

Query: 707  TLGFFALFGIE-FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LG+  +FG+   N+     ++TL+G      +++ +  ++        +S  D I  + 
Sbjct: 890  ALGWTHVFGLSSMNIYTQVGLITLVGLITKHGILMCEVAKEE--QLHNGLSRADAIKHAA 947

Query: 766  NETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLF 822
               L   + T+ A    ++P +   G   +  F I +    G+ +    ++F+   I  +
Sbjct: 948  TIRLRPILMTTAAMIAGLIPLLFASGAGAVARFNIGLVIVSGLAIGTVFTLFVLPVIYTY 1007

Query: 823  IYD 825
            + +
Sbjct: 1008 LAE 1010


>gi|192361024|ref|YP_001980895.1| RND efflux transporter, permease [Cellvibrio japonicus Ueda107]
 gi|190687189|gb|ACE84867.1| RND efflux transporter, permease protein [Cellvibrio japonicus
           Ueda107]
          Length = 1027

 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 76/583 (13%), Positives = 162/583 (27%), Gaps = 40/583 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   I  +GLL           +   P                  +  L   
Sbjct: 9   KRPVASCLVALGIVLLGLLS-----WRMLPVAPLPQVDFPAVQ---------IYAALPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q    I + F   R  ++ A  V   L  
Sbjct: 55  SPESMAATVATPLERALGSIPGVTAINSNSTQGSTFIWVEFTLDRDLDSAARDVQAALNE 114

Query: 122 VNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L             +  +  I+    +   +     +           Q+   +  
Sbjct: 115 ARGQLPAGMPGNPGYRKISPSQAPIMALALSSPNL--SLSDLYDAASTILAQQLSQIKGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       L  +  + +P+ L        ++       N  +   +      R      
Sbjct: 173 GQVGIDGASLPAVRIQLNPNALSSYGIALDEVRNAISNANVQRPLGLLEENDSRWQVYTN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +   V+                      D+      A          +   +      
Sbjct: 233 ESLRTAVD--------------------YQDLVIRYGEAGPVRLRDVATVTDSVENRYTN 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        S +   +   TI+        LRA         V          +  
Sbjct: 273 GFHNQSSAVTLTVSRQTGANIVATIDAINAQLPTLRALMPADTQLKVVMDRSPGIRATLK 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  +   LV+ V++  +   +  L+   S+ +++I    ++ L G +L   S+  +
Sbjct: 333 EAEITLMLAVLLVVGVVWAFLRSPQSALIPSLSLPVSIIGAFVVMYLWGFSLNNLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++  GL VD  I+V E I+    +    F +   G      T+   NIT ++  V +   
Sbjct: 393 IVAAGLVVDDAIVVLENIKRHIERGAPPFEAAIQGAREVGFTLLAMNITLVVIFVSILLM 452

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F+IT+  ++LIS+  ++S+  A+   +++ +  K                
Sbjct: 453 GGVIEKLFREFSITLAAAMLISLVVSLSLTPALCGQLLKPEAPKETKPGIFDDLKQGYAS 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +    +R     + I +     +I L          D   G  
Sbjct: 513 LLSWALRHSRIVMLILVGVIGVNIYLYIAIPKTMLPDQDTGQM 555



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 52/138 (37%), Gaps = 6/138 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                   AL    +L + I        L+G   N  ++ A++   G  V+D +VV + +
Sbjct: 351 AFLRSPQSALIPSLSLPVSIIGAFVVMYLWGFSLNNLSLMALIVAAGLVVDDAIVVLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
           +   +         +   +   E     +  ++   +  + + + GG +      F+I +
Sbjct: 411 K---RHIERGAPPFEAAIQGAREVGFTLLAMNITLVVIFVSILLMGGVIEKLFREFSITL 467

Query: 802 AFGIVVAASSSIFIAAPI 819
           A  ++++   S+ +   +
Sbjct: 468 AAAMLISLVVSLSLTPAL 485



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 75/225 (33%), Gaps = 5/225 (2%)

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
             S Q       + +   Y    + A             E+   +        GP +    
Sbjct: 791  RSNQFVSESIGYGLAEGYNEQQARAAIETKVAELMMPKEVYLAAPGSTRPGWGPSVPGMS 850

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                I+   +     LI   +       L  ++TL       L    L    F+L A+  
Sbjct: 851  QNPAILIGCVLLAVYLILGILYESTIHPLTILSTLPSAGIGALLALQLSDTPFSLIAMLG 910

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +  LIG  + + +++ D   +        +S RD I ++        + T++A  +  LP
Sbjct: 911  LFLLIGIVMKNAILMIDFALE--LERREGLSSRDSIYQAALMRFRPILMTNLAGVLGALP 968

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + +    G  +     I +  G+ V+   ++F    + L++   R
Sbjct: 969  LILGFNEGSELRTPLGITIIGGLAVSQVLTLFTTPVVYLYMEKVR 1013


>gi|17987176|ref|NP_539810.1| acriflavin resistance protein B [Brucella melitensis bv. 1 str.
           16M]
 gi|256044748|ref|ZP_05447652.1| acriflavin resistance protein B [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565650|ref|ZP_05836134.1| acriflavin resistance protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991169|ref|ZP_06103726.1| acriflavin resistance protein [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|17982844|gb|AAL52074.1| acriflavin resistance protein b [Brucella melitensis bv. 1 str.
           16M]
 gi|260151718|gb|EEW86812.1| acriflavin resistance protein [Brucella melitensis bv. 1 str. 16M]
 gi|263001953|gb|EEZ14528.1| acriflavin resistance protein [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 1029

 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 62/161 (38%), Gaps = 6/161 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++    +   + + +  +F+ +      + ++ L I   +    +     N+     ++T
Sbjct: 849  LIAFGFAVFVIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLIT 908

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G      +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +
Sbjct: 909  LVGLITKHGILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLII 966

Query: 789  WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              G+      S  + +  GI +    ++F+      FI   
Sbjct: 967  ATGAGAAARYSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|325473532|gb|EGC76725.1| protein-export membrane protein SecD [Treponema denticola F0402]
          Length = 587

 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 123/504 (24%), Positives = 222/504 (44%), Gaps = 72/504 (14%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFV--------------NGFLQMYSDELRSFLKKEGI 86
            N + LGLDL GG  ++++ D D  +                 + +  D LRS + K G+
Sbjct: 140 TNAVKLGLDLSGGMLVIIKADLDAAISADGASSDTIADSKKAAMTLAMDTLRSRIDKFGL 199

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +R+   ++I +    +   + I   +          ++ +  +             
Sbjct: 200 TDPVIRRQGDDRIYIEMPGAADADKINSIIMGRGILAFHIVDDEATQ------------- 246

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
              +   +        +   +  + I +  +      +                      
Sbjct: 247 AFREYYRNNPGKTFDAEYNLLNPEIIPEDCMVLGVYHKDAYGIDE--------------- 291

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                                       RD      +V+ +  + G HL     + D ++
Sbjct: 292 ----------------------------RDDREPFLVVKKQAGLEGKHLVSVDTSTDQRS 323

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           + P+V+ S D  GA+ F E+T +N+GK LA+V D ++ +AP   +   +G +      + 
Sbjct: 324 NNPLVNFSLDAEGAKIFAELTTNNVGKRLAIVSDNKIKSAPN-LKEPITGGSGSISGMSA 382

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
             A  L  +LR   L + L +  ++ VGA LG + I +G  A+  GL+ +++FM+V Y +
Sbjct: 383 TEANNLKTVLRTAWLNVPLQLETQQVVGASLGDEKINEGIKALQWGLIAVLVFMLVFYKE 442

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G+ A  +  LN+ +  ++LS    TLTLPSIAG++L IG+AVD+N++V ERI+EE R  
Sbjct: 443 AGINACIAQILNLYIMFSILSAFNLTLTLPSIAGMILTIGMAVDANVVVFERIKEELRLG 502

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           ++   S++ GF  A+S I DSNIT  IA   L   G G ++GFA ++ + ++ S+FTA+ 
Sbjct: 503 KTREASINAGFEHAFSAIMDSNITTFIAAFFLSILGTGPIKGFAYSLAIGVVSSVFTALF 562

Query: 506 IVRAMMIFIIRYKKMKSIDINPLS 529
           + R +  F  +  K++ I I+   
Sbjct: 563 VSRLIFDFGTQTLKLEKIHISWRK 586



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  ++VG  +  E I +GI  +    IA+L+++ + +K    + A    IL++       
Sbjct: 404 ETQQVVGASLGDEKINEGIKALQWGLIAVLVFMLVFYK-EAGINACIAQILNLYIMFSIL 462

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           + F +   L ++A ++  IG +V+  VVV++R+++ ++L  T       I+         
Sbjct: 463 SAFNLTLTLPSIAGMILTIGMAVDANVVVFERIKEELRLGKTR---EASINAGFEHAFSA 519

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +++  FI+   +++ G   I  FA  +A G+V +  +++F++  ++        K  
Sbjct: 520 IMDSNITTFIAAFFLSILGTGPIKGFAYSLAIGVVSSVFTALFVSR-LIFDFGTQTLKLE 578

Query: 832 RI 833
           +I
Sbjct: 579 KI 580


>gi|325283547|ref|YP_004256088.1| acriflavin resistance protein [Deinococcus proteolyticus MRP]
 gi|324315356|gb|ADY26471.1| acriflavin resistance protein [Deinococcus proteolyticus MRP]
          Length = 1159

 Score =  144 bits (361), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 58/515 (11%), Positives = 146/515 (28%), Gaps = 41/515 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  + + +++    +GL+ A      +   D  P                         
Sbjct: 49  RNVVFSLGIFAAAVLLGLIAA-----SRLGTDLLPDFEVPVL---------AVSTTYPGA 94

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + VN  +    ++  S +        +    Q+ + ++FA+    +  A+ V+  +  
Sbjct: 95  SPEQVNREVSTRVEDAISTVAGVTDVSTTSVGSQSAVVITFAEGTDIDAAANSVSQAVSA 154

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L    +  ++         I+              E +       + ++       
Sbjct: 155 IRATLPDGAEAPVVQKFDPNARPILTLSLLSAGAGPA--EAARYAEDILVPRLQRVPGVA 212

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +    DP+RL     + A++S                            
Sbjct: 213 DVTVSGGRDRAVEVLLDPARLNTYDLSAAQVSGAIGASALDIPA---------------- 256

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +   G  +  AT N           +     G +        ++      V    
Sbjct: 257 ---GTLVQGGQEITFATRNTPSTLSDVENILVDSARGIQI---SDVADVRDASERVSTLS 310

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +             +  +     +    + +   A         V          +   
Sbjct: 311 RVNGQPAVLLDIRKASGSNSPAVADAVREVVSEQAAELPQGYRLSVATDTTDVTRATVDD 370

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I    V +++ + +           ++ +++     + + LG T  + S+  I+
Sbjct: 371 TLHEFFIAVAAVGVIVLLFLGRLSTVFAVILAVPISISAAPLVYAGLGFTFNIVSLLAII 430

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD +I+V E ++           ++ +G S  +S +  ++   L   + L    
Sbjct: 431 VAIGIVVDDSIVVAENVQRYRDLGYDRLRAVLLGGSEVFSAVTAASFALLAVLIPLSLMP 490

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
              G     F + +  +IL+S   ++  +   M +
Sbjct: 491 GLLGQFFSQFGLGLSAAILMSWLESLLFLTVRMAY 525



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 93/269 (34%), Gaps = 9/269 (3%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +     N          + V + R + +S V    ++ +      +        L   + 
Sbjct: 266 ITFATRNTPSTLSDVENILVDSARGIQISDVADVRDASERVSTLSRVNGQPAVLLDIRKA 325

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
              +S A    +  V  +    +P     +       ++R  +   +    I+  A+ + 
Sbjct: 326 SGSNSPAVADAVREVVSEQAAELPQGYRLSVATDTTDVTRATVDDTLHEFFIAVAAVGVI 385

Query: 684 IWIRFKWYFALGAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           + +       + A+   + + I+     +A  G  FN+ ++ A++  IG  V+D +VV  
Sbjct: 386 VLLFLGRLSTVFAVILAVPISISAAPLVYAGLGFTFNIVSLLAIIVAIGIVVDDSIVVA- 444

Query: 743 RMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFA 798
              +N++ Y          +    +E        S A    ++P+++     G     F 
Sbjct: 445 ---ENVQRYRDLGYDRLRAVLLGGSEVFSAVTAASFALLAVLIPLSLMPGLLGQFFSQFG 501

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + ++  I+++   S+      + +  D  
Sbjct: 502 LGLSAAILMSWLESLLFLTVRMAYTRDRE 530



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 17/125 (13%), Positives = 49/125 (39%), Gaps = 7/125 (5%)

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    LFG + ++  +  ++ L+G S  + ++  + + + ++    S   R+ + ++   
Sbjct: 1026 LWSLRLFGTDLDVITMIGMVILLGLSTKNSILYLEFVTERLR----SQPLREALIEAAEL 1081

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 + T++   +  +P+ +    G        I +  GIV +   + ++   +     
Sbjct: 1082 RFRPIIMTTLTVLVISIPLILGQGDGAEFRRGLGIVILGGIVTSTLLTFYVVPSVFYLGE 1141

Query: 825  DWRAK 829
              R  
Sbjct: 1142 RGRQP 1146


>gi|219847303|ref|YP_002461736.1| acriflavin resistance protein [Chloroflexus aggregans DSM 9485]
 gi|219541562|gb|ACL23300.1| acriflavin resistance protein [Chloroflexus aggregans DSM 9485]
          Length = 1101

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/585 (10%), Positives = 163/585 (27%), Gaps = 44/585 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   ++ ++       G+L         + ++  P                   +     
Sbjct: 20  RQPVFITMVMLAFITFGILS-----FRSTPVNLLPEIDVPIV---------AVTITYPGA 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   + L           +    I L F      + + + V   +  
Sbjct: 66  GPESVVDQVVRPVENAVNTLAGLKHITSQASEGIATILLEFEAGNSAKQVEEDVRQRVNS 125

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  D ++ +       +  I+             +E    +  Q +  I  +    
Sbjct: 126 ILPQLPRDVRQPIFQRFDPNQAPIMQIAIADTSG-RSPLELRTLVEEQLVPLIQRAPGVG 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     Q+    D ++L+      A++S      N               S     
Sbjct: 185 SVTVNGGQERQINVWLDLAKLQAYGLLPAQISRSLQQANADLGLGSLIENDTEISLRVPS 244

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+    +I+ + ++                          +       + + +A V    
Sbjct: 245 LLRSVTDIANVQIS-----------------------GTPYRVSDVAVVSEGVAEVTTIS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            ++  +     +          A         +   +  A   S + 
Sbjct: 282 RLNGSEAILLSVLKQSGANTVTVADNVYKALEQAFAPFP-ELTYTIPVDSSEAVRSSVAS 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   +    +V++      +  ++    + + +I T   + + G T+ L ++  + 
Sbjct: 341 SLEELIFASIAAFLVVWFFFGNLRSTIITMSGLPVILIGTFIFMPIFGLTINLVTLLALS 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +GL +D  I+V E I     + +S   +   G      ++    +T +   V + F  
Sbjct: 401 LCVGLVIDDAIVVRENIFRHLERGESARVASSRGTWEVGLSVVAMTLTIVAVFVPVTFAE 460

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F + + ++IL+S+  A +    +   +    K+K       S    I +  
Sbjct: 461 GVAGIVFKSFGLVVSIAILLSLAEAFTFAPMLSANLFPNIKLK--PKPHHSDHRPIVEIP 518

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
               +  R  G+          +   +   L + +       + V
Sbjct: 519 ISDEVSERDIGLLQEANEDPGRMGRWYGKLLGWTLASLRNRLIVV 563



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 76/213 (35%), Gaps = 11/213 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR--ELIRKGIV 671
             +  + L            V + V K + +           I           +   + 
Sbjct: 284 NGSEAILLSVLKQSGANTVTVADNVYKALEQAFAPFPELTYTIPVDSSEAVRSSVASSLE 343

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +I ++IA  + +W  F      +  ++ L + +  T  F  +FG+  NL  + A+   +
Sbjct: 344 ELIFASIAAFLVVWFFFGNLRSTIITMSGLPVILIGTFIFMPIFGLTINLVTLLALSLCV 403

Query: 731 GYSVNDKVVVYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           G  ++D +VV    R+N  +      S R    +   E     V  ++      +P+   
Sbjct: 404 GLVIDDAIVV----RENIFRHLERGESARVASSRGTWEVGLSVVAMTLTIVAVFVPVTFA 459

Query: 790 GGS---VIGSFAIPMAFGIVVAASSSIFIAAPI 819
            G    V  SF + ++  I+++ + +   A  +
Sbjct: 460 EGVAGIVFKSFGLVVSIAILLSLAEAFTFAPML 492



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/219 (10%), Positives = 75/219 (34%), Gaps = 12/219 (5%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                  L     + V  +     V+ ++  +   + +  + +     + E      + + 
Sbjct: 825  DRLNQVLVGANLEGVNLSDAQAAVQARLATLDIPADVVVSYVGTIAQTNEGFSSLFLAMG 884

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +S + + + +  +F  +   L  +  +            L GI+ ++T +  ++ L+G  
Sbjct: 885  LSVLFVYMVLASQFGSFTQPLVIMMAMPFSFIGAFLALRLVGIDLDITGMIGLIMLLGLV 944

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
            V + +++ D      +L    +     +  +    L   + T+++     +P A+     
Sbjct: 945  VKNSILLVDF---TNRLRDLGLDKHSALKLAGAIRLRPILMTALSLVAGAMPTALGLHVL 1001

Query: 790  ----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                G       A  +  G++ +   ++ +   +   + 
Sbjct: 1002 ATGEGNEFRKGLAWVLIGGMLTSTLLTLLVVPTVYSLMD 1040



 Score = 45.8 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 53/530 (10%), Positives = 132/530 (24%), Gaps = 41/530 (7%)

Query: 10   LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
            L  +   + +L           L  FP   P   I                         
Sbjct: 560  LIVVGIALAVLGLSVWVASGLKLTFFPEQDPHEFI---------MRFEAAPGTPLAETDR 610

Query: 70   LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
            L   ++++          +  +          F+ +             L+   S L   
Sbjct: 611  LARQAEQILLNDPAIENVITRVGSPGFPERAEFSVTLVGRTPTLPTQERLREQLSFLPRL 670

Query: 130  PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                     +   +     Q ++      A E +  +   + +   +             
Sbjct: 671  SFSVPSFQPSGAGVEGRELQVSLQT-TRPATELAPLVEAIKREMAAVPGLVDIDSNLQLG 729

Query: 190  LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +L    DP+R+ +L  T   ++       N ++  +            +   +D+  +
Sbjct: 730  KPELRLRADPARIGELGITNEDIASSVRALINGERATVLRTGNTDLDVVVRLAPQDRAGV 789

Query: 250  SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
              +                +  +               + +                   
Sbjct: 790  ETLGAISIPTRSGVVPLSALGTVELTSSQVSIRRYDRLNQVLVG---------------- 833

Query: 310  QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                   A + G    +    + A L    +P  + +     +       S       + 
Sbjct: 834  -------ANLEGVNLSDAQAAVQARLATLDIPADVVVSYVGTIAQTNEGFSSLFLAMGLS 886

Query: 370  AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
               V +VL          LV   ++  + I     L L+G  L +  + G+++ +GL V 
Sbjct: 887  VLFVYMVLASQFGSFTQPLVIMMAMPFSFIGAFLALRLVGIDLDITGMIGLIMLLGLVVK 946

Query: 430  SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--------FG 481
            ++IL+ +              +L +  +     I  + ++ +   +             G
Sbjct: 947  NSILLVDFTNRLRDLGLDKHSALKLAGAIRLRPILMTALSLVAGAMPTALGLHVLATGEG 1006

Query: 482  GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
                +G A  +   +L S    + +V  +   +           + +   
Sbjct: 1007 NEFRKGLAWVLIGGMLTSTLLTLLVVPTVYSLMDAAVTWLKQRFSGMQPH 1056


>gi|116254728|ref|YP_770564.1| ACR/RND family transmembrane transporter [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115259376|emb|CAK10511.1| putative Acr/RND family transmembrane transporter [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1048

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/518 (13%), Positives = 161/518 (31%), Gaps = 42/518 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEV 60
           RN    ++L++M+   GLL        Q  +  FP   +P  +I+  LD           
Sbjct: 9   RNPVPAILLFAMLAVGGLLA-----FKQLPVQNFPDMDLPTIKITATLD----------G 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    ++  + L        ++      I++SF   +  E   ++V   + 
Sbjct: 54  AAPAQLETEVARTIEDNLASLSYLDHVTTTITDGTVSISVSFKLEKDSETALNEVRNAVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L    +   +   T +  ++V        +     E S  I       +      
Sbjct: 114 SATADLPAQMQTPSVTKVTVQSSALVTYAIRSAVLNE--TELSWFIDNDLTKALLSVPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q      +  ++  + DP+ +     T   +S           G +  +   R +    
Sbjct: 172 GQVNRIGGVDREVHVDLDPTTMAAFGVTATTVSAQLKSVQADTSGGLGEIGGTRQTLRTL 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V     +  + +                         ++       ++    A     
Sbjct: 232 GAVASVDALKELRI--------------------PLANGQQVRLDDVASVTDSFAERSSM 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L    +           S +              A    +++       +G  + +  
Sbjct: 272 AYLDGKPVVAVEIKRSNGFSDSSVAADVDEAMKQFAAKHSNVQIEE-AYSTLGPIIDNYD 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L +IV+++ +   +  +++  ++ L+VI T  ++ L G +L + ++  +
Sbjct: 331 GSMHMLYEGAILAIIVVWLFLRDWRATILSAVALPLSVIPTFLVMYLAGFSLNVVTLLAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+  E I    +  +    +     +     +  +  T +   +   F 
Sbjct: 391 SLVVGILVDDAIVEVENIARHLQMGKRPIDAALEAANEIGLAVIATTFTLVAVFLPTAFM 450

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFII 515
            G      R F IT  +++L+S+  A  +   M  + +
Sbjct: 451 SGIPGLIFRQFGITAAVAVLVSLVVARLLTPMMAAYFM 488



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 62/223 (27%), Gaps = 14/223 (6%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG-EKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            V  +    ++   +   S+   D         +++          D     +       
Sbjct: 252 QVRLDDVASVTDSFAERSSMAYLDGKPVVAVEIKRSNGFSDSSVAADVDEAMKQFAAKHS 311

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +      ST+             L    I+ +I+              W   + +   L
Sbjct: 312 NVQIEEAYSTLGPIIDNYDGSMHMLYEGAILAIIVVW-------LFLRDWRATILSAVAL 364

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +  T     L G   N+  + A+  ++G  V+D +V  + +    +         D 
Sbjct: 365 PLSVIPTFLVMYLAGFSLNVVTLLALSLVVGILVDDAIVEVENI---ARHLQMGKRPIDA 421

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
             ++ NE     + T+       LP A   G        F I 
Sbjct: 422 ALEAANEIGLAVIATTFTLVAVFLPTAFMSGIPGLIFRQFGIT 464



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 72/179 (40%), Gaps = 8/179 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
            + S EL +   + + I    +   + + F  +      +  L L +   L    + G  F
Sbjct: 837  QRSSELFQSFGLAMAIGVFCIYAILVLLFHDFLQPFTLLMALPLSLGGALVPLVVTGTSF 896

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            +++AV  +L L+G    + +++   +   +      +   D +  + ++     + T++A
Sbjct: 897  SMSAVIGLLMLMGVVTKNSILL---IEYAIMSRRQGMPRFDALVDACHKRARPIIMTTIA 953

Query: 779  AFISVL--PMAVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                +L   +++ GG        AI +  G++++   S+ +   I  F+ D      R+
Sbjct: 954  MACGMLPVALSLTGGDSSFRQPMAIVVIGGVMMSTLLSLVVIPVIFTFVDDLNEALKRL 1012


>gi|186476530|ref|YP_001858000.1| acriflavin resistance protein [Burkholderia phymatum STM815]
 gi|184192989|gb|ACC70954.1| acriflavin resistance protein [Burkholderia phymatum STM815]
          Length = 1045

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 81/621 (13%), Positives = 171/621 (27%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I  +GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLVGLVALRFLPLSALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PDVMTSSVTAPLERQFGQMPSLNQMSSQSSAGSSIITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +L+   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPILT-LAITSKTLPLTQVQDLADTRLAQKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F       +      
Sbjct: 175 VSLSGGQRPAVRIQANPRALASYGLNLDDLRTTISNLNVNTPKGNFDGPTRAYTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + D                                  R         I         G  
Sbjct: 235 LTDA--------------------DAYKSAVVAYKNGRPVMLTDVATIVAGAENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           + +          +   +    +++   L   L+          V          S    
Sbjct: 275 VDSTPAIVLNVQRQPGANVIQVVDSIKKLLPTLQQSLPAALDVQVVTDRTTTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELLMSVVLVVLVMYLFLANLYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +      +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGDPPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+   K            I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPKESHRFEARAHAAIDWVIA 514

Query: 540 -------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +   + ++  +F     + +   G IQ    A + V  +
Sbjct: 515 RYAVALEWVLNRQRSTLVVALLTLVLTAVLYVFIPKGFFPVQDTGVIQAITQAPQSVSYA 574

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    + L    +   N + 
Sbjct: 575 SMAERQQQLAAQILKNPNVES 595



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 52/127 (40%), Gaps = 6/127 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +    ++ L +  TL    L G   +  ++ A+    G+ V+D +V+ + +    +    
Sbjct: 360 IIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTIATGFVVDDAIVMIENI---ARYVEE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
                +   K   +     +  +++    ++P+   G   G +   FAI +A  IV++A 
Sbjct: 417 GDPPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITLAVTIVISAV 476

Query: 811 SSIFIAA 817
            S+ +  
Sbjct: 477 VSLTLVP 483



 Score = 45.5 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 37/95 (38%), Gaps = 5/95 (5%)

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D   +           R+ I ++        + T+MAA +  LP+ +    G  + 
Sbjct: 929  IMMIDFALE--AEREHGKPPREAIYQACLLRFRPILMTTMAALLGALPLMLGTGAGSELR 986

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                I +A G++V+   ++F    I L       +
Sbjct: 987  RPLGIAIAGGLIVSQLLTLFTTPVIYLGFDSIARR 1021


>gi|224026818|ref|ZP_03645184.1| hypothetical protein BACCOPRO_03575 [Bacteroides coprophilus DSM
           18228]
 gi|224020054|gb|EEF78052.1| hypothetical protein BACCOPRO_03575 [Bacteroides coprophilus DSM
           18228]
          Length = 990

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/537 (11%), Positives = 151/537 (28%), Gaps = 36/537 (6%)

Query: 84  EGIGVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           E +   +         +I + F      +  A  V   +      L  +     + T   
Sbjct: 1   ENMIYITSTATNAGTAEILVYFKQGTDPDMAAVNVQNRVSEAQGLLPSEVTAIGVSTMKR 60

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
           +   + ++              +  +    I QI   +                  + P 
Sbjct: 61  QNSYLQINSLISPDKRYDETFLANYLDINVIPQIKRIQGVGDVQLMGDTYSMRIWMK-PE 119

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           ++ Q   T + ++      N        G       +  QY ++ K  +           
Sbjct: 120 KMAQYGLTPSDVTAVLNEQNIEA---PTGSLAESSDNVFQYTMKYKGRLKSTE------- 169

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
                 +    +   +             +                     +    A  +
Sbjct: 170 ------EFENIVLRSQKDGSVLRIKDIAEVELGRESYSFHGEADGVPGVTFMTFQVAGAN 223

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
                E    L   +          I           S      T  I   LV++V++  
Sbjct: 224 ATAVNEEISQLLDEISKDLPEGTEFIQMMSVNDFLFASIDNVIETLVIAIILVVLVVYFF 283

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           +   K  L+   SI +++I T A LS+ G ++ + ++  +VL IG  VD  I+V E ++ 
Sbjct: 284 LHDFKSTLIPTISILVSLIGTFAFLSIAGFSINILTLFALVLAIGTVVDDTIIVVEAVQA 343

Query: 441 ENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSI 496
           +      S + +     +     +       +   + + F GG +      F +TM +++
Sbjct: 344 KFDVGYRSPYLATKDAMNDVTMAVISCTCVFMAVFIPVTFMGGTSGVFYTQFGVTMAVAV 403

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR------------FFLIPDCIAIQFMR 544
            +S   A+++  A+   +++    +    +   R                   +   F  
Sbjct: 404 GLSCINALTLCPALCAMMMKPSDTEKNVRSFNGRIRAAYNASFNVLMSKYKKGLMFFFHH 463

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                  + +   +    +  T       + +G + + +  +    L+     ++ +
Sbjct: 464 RWMVWTSLGLASILLVYLMGTTKTGLVPQEDQGTMMINISTSPGNSLAETNKVMDKV 520



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 99/284 (34%), Gaps = 9/284 (3%)

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
               S+  S  ++              +    + + + +   +  ++   E     +   
Sbjct: 142 APTGSLAESSDNVFQYTMKYKGRLKSTEEFENIVLRSQKDGSVLRIKDIAEVELGRESYS 201

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL--- 665
            + + +    V            T V E + + + EI          I    ++  L   
Sbjct: 202 FHGEADGVPGVTFMTFQVAGANATAVNEEISQLLDEISKDLPEGTEFIQMMSVNDFLFAS 261

Query: 666 IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           I   I  ++I+ I +++ ++     +   L    ++++ +  T  F ++ G   N+  + 
Sbjct: 262 IDNVIETLVIAIILVVLVVYFFLHDFKSTLIPTISILVSLIGTFAFLSIAGFSINILTLF 321

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
           A++  IG  V+D ++V + ++    +     S       ++N+     +  +       +
Sbjct: 322 ALVLAIGTVVDDTIIVVEAVQAKFDVGYR--SPYLATKDAMNDVTMAVISCTCVFMAVFI 379

Query: 785 PMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           P+   GG+       F + MA  + ++  +++ +   +   +  
Sbjct: 380 PVTFMGGTSGVFYTQFGVTMAVAVGLSCINALTLCPALCAMMMK 423



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 71/256 (27%), Gaps = 11/256 (4%)

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
              ++     +               +    +S   +             N     N  V
Sbjct: 693 YRVMIQASPESRLDQHALDNMFVRNGDEMAPVSQFVTLRNIQGAEIAKRFNLYNTINVNV 752

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEI-VPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                      Q  + E+  + +             E  G   ++ +    I  V+I  I
Sbjct: 753 NATEGYSSGEVQQAIREVAAQTLPSGYGYEYGGMAREEAGNSGAQTVFIYTICVVLIYLI 812

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
              +Y      +   L  I ++   +  +  F  + G+E N       + LIG      +
Sbjct: 813 LSCLY----ESFLVPLAVILSVPFGLMGSFLFARIAGLENNFYLQTGAIMLIGLLAKTAI 868

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
           ++ +   +  +     +        S        + T +     +LP+      G +   
Sbjct: 869 LITEYAIERRRA---GMGIISSAYSSAQARFRPIIMTVLCMIFGMLPLMFSSGAGANGNS 925

Query: 796 SFAIPMAFGIVVAASS 811
           S A  +A G+++   +
Sbjct: 926 SLATGVAGGMLIGTLA 941


>gi|157377282|ref|YP_001475882.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
 gi|157319656|gb|ABV38754.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
          Length = 1027

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/621 (12%), Positives = 183/621 (29%), Gaps = 44/621 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R       +  M+  +G        L +  +  +P                         
Sbjct: 9   RRPVLAASISFMLLLLGFYS-----LSKMQVREYPEMTNTVVT---------VSTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + + GF+    ++  +                +KIT+    +         +   +  
Sbjct: 55  DANLIQGFITQPLEQALAQADNVDFMTSDSFLGSSKITVYMKLNTDPNGALADILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + + + +  +T  + S++      D++ S   + +  + R    Q+   +   
Sbjct: 115 VRSQLPKEAEDSTVDMSTGSQTSVLYISFYSDEINSS--QITDYLERVVKPQLFTIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I   +    DP+R+     +++++       N           F   +     
Sbjct: 173 KVNLYGGIKYAMRIWLDPARMGAFGLSSSEVMQVLQANNYQSAVGQANGVFTLFNGTADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+                      +                ++    +  +   
Sbjct: 233 QVATVDELK--------------------KLVIGSKEGLVVRLGDIADVSLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +       A  L   +           +   +  A   S   
Sbjct: 273 LADGQEAVVVALDVTPTANPLVVAADARALMPDIERNLPVSMKTRILYDSSLAIDESIQE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +V+IV+ + +   +  ++   +I L++I    ++ + G TL L ++  +V
Sbjct: 333 VIKTIGEAALIVIIVITLFLGSFRAVIIPIVTIPLSLIGVAIIMMIFGFTLNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVDRHIKLGESPFRAAIIGTREIAVPVISMTITLAAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF-----FL 533
              G   + FA+T+  ++ IS   A+++   M   I++     +     +  F       
Sbjct: 453 GITGSLFKEFALTLAGAVFISGIVALTLSPMMCSKILKPHSAPNRFEFAVENFLEGMTKR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     R         I+F+   +   F        + K  + +   A    +L  
Sbjct: 513 YQGMLNAVMERRPVVIAFAIIVFASLPVMFSFIPSELAPNEDKSVVMMMGTAPSTANLDY 572

Query: 594 VRSNLESLQIGDISFQNFDGE 614
           ++SN+  +     S       
Sbjct: 573 IQSNMALVTDMIKSHPESAAS 593



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 76/233 (32%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +                   E   +        + +        +   I   +P+
Sbjct: 253 VRLGDIADVSLEKSHDVYRALADGQEAVVVALDVTPTANPLVVAADARALMPDIERNLPV 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
           S              E I++ I  +   + I +++       +   +  I T+ L +   
Sbjct: 313 SMKTRILYDSSLAIDESIQEVIKTIGEAALIVIIVITLFLGSFRAVIIPIVTIPLSLIGV 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   NL  + A++  IG  V+D +VV + +    +      S          E
Sbjct: 373 AIIMMIFGFTLNLMTLLAMVLAIGLVVDDAIVVVENV---DRHIKLGESPFRAAIIGTRE 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                +  ++       P+A+ G   GS+   FA+ +A  + ++   ++ ++ 
Sbjct: 430 IAVPVISMTITLAAVYAPIALMGGITGSLFKEFALTLAGAVFISGIVALTLSP 482



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 65/164 (39%), Gaps = 10/164 (6%)

Query: 674  IISAIAMLIYIWIRFKW-YFALGAITTLILDI---TKTLGFFALFGIE-FNLTAVAAVLT 728
             ++   + + +  +F+     L  + ++ L I      LG+  +FG+   N+     ++T
Sbjct: 853  GLALAIIFLVLASQFESARDPLVILVSVPLAISGALIALGWTHIFGLSSMNIYTQVGLIT 912

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-A 787
            L+G      +++ +  ++        +S  + I  +    L   + T+ A    ++P+  
Sbjct: 913  LVGLITKHGILMCEVAKEE--QLHNGLSKMEAIKLAATIRLRPILMTTAAMIAGLIPLLF 970

Query: 788  VWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAK 829
              G   I  F I +    G+ +    ++F+   I  ++ +    
Sbjct: 971  AVGAGAIARFNIGLVIVSGLAIGTLFTLFVLPVIYTYLAEKHEP 1014


>gi|42526196|ref|NP_971294.1| preprotein translocase subunit SecD [Treponema denticola ATCC
           35405]
 gi|41816308|gb|AAS11175.1| protein-export membrane protein SecD [Treponema denticola ATCC
           35405]
          Length = 587

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 123/504 (24%), Positives = 221/504 (43%), Gaps = 72/504 (14%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFV--------------NGFLQMYSDELRSFLKKEGI 86
            N + LGLDL GG  ++++ D D  +                 + +  D LRS + K G+
Sbjct: 140 TNAVKLGLDLSGGMLVIIKADLDAAISADGASSDTIADSKKAAMTLAMDTLRSRIDKFGL 199

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +R+   ++I +    +   + I   +          ++ +  +             
Sbjct: 200 TDPVIRRQGDDRIYIEMPGAADADKINSIIMGRGILAFHIVDDEATQ------------- 246

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
              +   +            +  + I +  +      +                      
Sbjct: 247 AFREYYRNNPGKTFDADYNLLNPEIIPEDCMVLGVYHKDAYGIDE--------------- 291

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                                       RD      +V+ +  + G HL     + D ++
Sbjct: 292 ----------------------------RDDREPFLVVKKQAGLEGKHLVSVDTSTDQRS 323

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           + P+V+ S D  GA+ F E+T +N+GK LA+V D ++ +AP   +   +G +      + 
Sbjct: 324 NNPLVNFSLDAEGAKIFAELTTNNVGKRLAIVSDNKIKSAPN-LKEPITGGSGSISGMSA 382

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
             A  L  +LR   L + L +  ++ VGA LG + I +G  A+  GL+ +++FM+V Y +
Sbjct: 383 TEANNLKTVLRTAWLNVPLQLETQQVVGASLGDEKINEGIKALQWGLIAVLVFMLVFYKE 442

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G+ A  +  LN+ +  ++LS    TLTLPSIAG++L IG+AVD+N++V ERI+EE R  
Sbjct: 443 AGINACIAQILNLYIMFSILSAFNLTLTLPSIAGMILTIGMAVDANVVVFERIKEELRLG 502

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           ++   S++ GF  A+S I DSNIT  IA   L   G G ++GFA ++ + ++ S+FTA+ 
Sbjct: 503 KTREASINAGFEHAFSAIMDSNITTFIAAFFLSILGTGPIKGFAYSLAIGVVSSVFTALF 562

Query: 506 IVRAMMIFIIRYKKMKSIDINPLS 529
           + R +  F  +  K++ I I+   
Sbjct: 563 VSRLIFDFGTQTLKLEKIHISWRK 586



 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 38/182 (20%), Positives = 88/182 (48%), Gaps = 5/182 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +  ++VG  +  E I +GI  +    IA+L+++ + +K    + A    IL++       
Sbjct: 404 ETQQVVGASLGDEKINEGIKALQWGLIAVLVFMLVFYK-EAGINACIAQILNLYIMFSIL 462

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           + F +   L ++A ++  IG +V+  VVV++R+++ ++L  T       I+         
Sbjct: 463 SAFNLTLTLPSIAGMILTIGMAVDANVVVFERIKEELRLGKTR---EASINAGFEHAFSA 519

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +++  FI+   +++ G   I  FA  +A G+V +  +++F++  ++        K  
Sbjct: 520 IMDSNITTFIAAFFLSILGTGPIKGFAYSLAIGVVSSVFTALFVSR-LIFDFGTQTLKLE 578

Query: 832 RI 833
           +I
Sbjct: 579 KI 580


>gi|78356012|ref|YP_387461.1| AcrB/AcrD/AcrF family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78218417|gb|ABB37766.1| AcrB/AcrD/AcrF family protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 1024

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/678 (10%), Positives = 191/678 (28%), Gaps = 51/678 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R     V++++ I  +G +        +  LD  P   P               ++    
Sbjct: 9   RRPVTTVMVFAAITLLGCVA-----FFRLNLDLLPDIEPPA-----------VSVITPYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +  Y ++  S            +     +   F      +   + +   +
Sbjct: 53  GASATDVESEVTKYLEDQLSTTPNLDRLESKSKDNIAIVNCIFNWGTDLDVAVNDIREKI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L    +   +   +   + +++     ++    + +    + +Q  D +     
Sbjct: 113 DLAKPDLADGAEDPFIFKFSSSMVPVLIMTVTAEE---SSPDLYRIVDKQIADPLKRVPG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               +       Q+    D   +     +  ++       N +       +         
Sbjct: 170 VGAVVYIGGQERQINVHFDREAIDAYHISVQQIRNVLAAENLNLPVGTVKIGRNELQIRV 229

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                D  EI+   +                       G           +        +
Sbjct: 230 AGRYRDAAEIANTVIG--------------------SNGDALVRLRDVATVTDAFEEPQE 269

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                       I   ++  +    IE        L+              N        
Sbjct: 270 WARSGKLPAIALIIQKQSGTNTVNVIEAIKDRLKTLKTEVPADIEIHGILDNSDHIYAMI 329

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +       +   LV++V F+ +   +  LV   +I  ++I+    L ++  T+ + S+  
Sbjct: 330 NSLTEAAVVGGLLVIVVCFLFLRRFRTSLVVSMAIPFSIIVAFIGLFVMDYTINVISMMS 389

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + + +G+ VD  I+V E I       +    +   G S     +  S +T +     L  
Sbjct: 390 LAIAVGMVVDDAIVVLENIVRHVDDGKPPQLAAVEGTSEVGMAVAASTLTIVAVFAPLLL 449

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI-- 534
                G      A  + ++IL S+F ++++       ++R +  + ++   +    L+  
Sbjct: 450 VKGIAGIIFGQLAFMILITILASLFISLTLTPMAASRLLRSRDQRKLNPVFVWSERLLNG 509

Query: 535 ----PDCIAIQFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPV 589
                  +    +R R   + + ++  I S+ L+       +     G +++ +   +  
Sbjct: 510 IEAGYSHVLGWGLRHRNILLSLIVIVFIGSLALIPLVGTEFFPEVDSGEVEVVLEMAQGT 569

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + V     E +     +    +       + +     ++       + +     I    
Sbjct: 570 RVEVTAGTTEEMLNAVNAIPEMEASYALAGQTKKGFLTALGFEEGTGIGRIGGRLIDKKE 629

Query: 650 TIQNTEIVGPKISRELIR 667
             ++ + V  ++  ++I+
Sbjct: 630 RSRHAKEVASELREQVIK 647



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/150 (10%), Positives = 49/150 (32%), Gaps = 6/150 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
               ++  +L     +   I        +     N+ ++ ++   +G  V+D +VV + +
Sbjct: 349 LFLRRFRTSLVVSMAIPFSIIVAFIGLFVMDYTINVISMMSLAIAVGMVVDDAIVVLENI 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVIGS-FAIPM 801
              ++        +    +  +E       +++       P+ +  G   +I    A  +
Sbjct: 409 ---VRHVDDGKPPQLAAVEGTSEVGMAVAASTLTIVAVFAPLLLVKGIAGIIFGQLAFMI 465

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              I+ +   S+ +       +   R +  
Sbjct: 466 LITILASLFISLTLTPMAASRLLRSRDQRK 495



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 53/145 (36%), Gaps = 7/145 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + ++       +  F       NL +   V+ L+G  V + +V+ D      
Sbjct: 884  DFVDPFIIMFSVPFAFAGVIWAFVATATPLNLMSFIGVIMLMGIVVKNAIVLVD---YTK 940

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    ++  + +       L   + TS+     ++P+A+    G  +  +  I +  G+
Sbjct: 941  QLRAGGMTLNEAVVTGGKTRLRPVLMTSLTTIFGMVPLALSRGEGSEIWNALGITVIGGL 1000

Query: 806  VVAASSSIFIAAPILLFIYDWRAKN 830
             V+   ++ I  P++  +       
Sbjct: 1001 SVSGLVTL-ILVPLMYSLVHRGKAK 1024


>gi|326388021|ref|ZP_08209625.1| RND transporter, HAE1/HME family, permease protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207522|gb|EGD58335.1| RND transporter, HAE1/HME family, permease protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 1072

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/512 (11%), Positives = 146/512 (28%), Gaps = 33/512 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   +   G+   L     +  +   P       +             L   
Sbjct: 9   RRPVGTILLTIGVALAGIAAFL-----KLPVAPLPKVDIPTIM---------VQASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +             Q ++ + F  SR  +  A  V   +  
Sbjct: 55  SPATMASTVASPLERRLQTIAGVNEITSRSTLGQAQVIMQFDLSRDIDGAARDVQAAIAA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    K            + +L    +        +    +      ++   +   
Sbjct: 115 SRADLPSTLKAQPTYRKMNPADAPILI-LTLTSATRSPAQIYDAVSNIVEQRLLQVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   L  +  E +P +L +       +       + ++   +       DS     
Sbjct: 174 NVELGGAALPSVRVEINPLQLARTGIALEDVRTALQSASANRPRGVIEGITTGDSGRAWQ 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +  ++  I                      +                 +      +    
Sbjct: 234 VYSNEPWIKAADFAP---------------LIIAWRNGAPVHLSDVAKVVDGPEDIRTMG 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I + +   +   T++        L+A         V          S   
Sbjct: 279 LFNGKKSVPIIVTRQPDANIVATVDALKAQLPALQAQLPGDIKLAVATDRTVTIRASLVE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+ + +   +  L+   ++ ++++ T+ ++ L G  L   S+  + 
Sbjct: 339 VEFTLLISTLLVVLVVSLFLQSWRATLIPAAAVIVSLLGTVGVMYLSGFLLDNLSLMALT 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I     +    F +   G      T+   +++ +   + L F G
Sbjct: 399 VATGFVVDDAIVVVENIARHVEEGMKPFPAALRGAKEVGFTVLSISVSLVAVFIPLVFMG 458

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAM 510
              G  +R FA+TM  ++ IS+  ++++   +
Sbjct: 459 GILGRLLREFALTMTTAVGISLIASLTVTPML 490



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     +I+ +  T+G   L G   +  ++ A+    G+ V+D +VV + +    
Sbjct: 360 SWRATLIPAAAVIVSLLGTVGVMYLSGFLLDNLSLMALTVATGFVVDDAIVVVENI---A 416

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +     +       +   E     +  S++     +P+   G   G ++  FA+ M   +
Sbjct: 417 RHVEEGMKPFPAALRGAKEVGFTVLSISVSLVAVFIPLVFMGGILGRLLREFALTMTTAV 476

Query: 806 VVAASSSIFIAAPI 819
            ++  +S+ +   +
Sbjct: 477 GISLIASLTVTPML 490



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 84/221 (38%), Gaps = 6/221 (2%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             +      + +      +  +  +++ +    +   +T+        K+ ++      + 
Sbjct: 836  SDGEPSATVSFNLPAGASLGQASQVIAQTQAALRLPATVHGDFGGTAKVFQQSTATIPLL 895

Query: 673  VIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ +  A+ I + I ++     L  ++TL       +    + G EF++ A+  V+ LIG
Sbjct: 896  IVAAIFAIYIVLGILYESAIHPLTVLSTLPSAGLGAILALIVTGGEFDIIALIGVILLIG 955

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL---PMAV 788
                + +++ D         +  +S  D I ++        + T++AA +  L       
Sbjct: 956  IVKKNAILIID--FAIDAERSLGMSPFDAIREASLLRFRPILMTTLAAALGALPLAIGFG 1013

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G  +     I +  G++V+   ++     + L +  WR +
Sbjct: 1014 DGAELRRPLGIAIVGGLLVSQVLTLLTTPVVYLALDKWRRR 1054


>gi|62290003|ref|YP_221796.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82699931|ref|YP_414505.1| acriflavin resistance protein [Brucella melitensis biovar Abortus
           2308]
 gi|189024244|ref|YP_001935012.1| Acriflavin resistance protein [Brucella abortus S19]
 gi|237815511|ref|ZP_04594508.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella abortus str. 2308
           A]
 gi|254689318|ref|ZP_05152572.1| Acriflavin resistance protein [Brucella abortus bv. 6 str. 870]
 gi|254706724|ref|ZP_05168552.1| Acriflavin resistance protein [Brucella pinnipedialis M163/99/10]
 gi|254710168|ref|ZP_05171979.1| Acriflavin resistance protein [Brucella pinnipedialis B2/94]
 gi|254730348|ref|ZP_05188926.1| Acriflavin resistance protein [Brucella abortus bv. 4 str. 292]
 gi|256031663|ref|ZP_05445277.1| Acriflavin resistance protein [Brucella pinnipedialis M292/94/1]
 gi|256159810|ref|ZP_05457550.1| Acriflavin resistance protein [Brucella ceti M490/95/1]
 gi|256255065|ref|ZP_05460601.1| Acriflavin resistance protein [Brucella ceti B1/94]
 gi|256257565|ref|ZP_05463101.1| Acriflavin resistance protein [Brucella abortus bv. 9 str. C68]
 gi|256369516|ref|YP_003107026.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella microti CCM 4915]
 gi|260546558|ref|ZP_05822297.1| acriflavin resistance protein [Brucella abortus NCTC 8038]
 gi|260754831|ref|ZP_05867179.1| acriflavin resistance protein [Brucella abortus bv. 6 str. 870]
 gi|260758048|ref|ZP_05870396.1| acriflavin resistance protein [Brucella abortus bv. 4 str. 292]
 gi|260883843|ref|ZP_05895457.1| acriflavin resistance protein [Brucella abortus bv. 9 str. C68]
 gi|261222255|ref|ZP_05936536.1| acriflavin resistance protein [Brucella ceti B1/94]
 gi|261314188|ref|ZP_05953385.1| acriflavin resistance protein [Brucella pinnipedialis M163/99/10]
 gi|261317723|ref|ZP_05956920.1| acriflavin resistance protein [Brucella pinnipedialis B2/94]
 gi|265988754|ref|ZP_06101311.1| acriflavin resistance protein [Brucella pinnipedialis M292/94/1]
 gi|265998219|ref|ZP_06110776.1| acriflavin resistance protein [Brucella ceti M490/95/1]
 gi|297248404|ref|ZP_06932122.1| acriflavin resistance protein [Brucella abortus bv. 5 str. B3196]
 gi|62196135|gb|AAX74435.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82616032|emb|CAJ11068.1| Acriflavin resistance protein [Brucella melitensis biovar Abortus
           2308]
 gi|189019816|gb|ACD72538.1| Acriflavin resistance protein [Brucella abortus S19]
 gi|237788809|gb|EEP63020.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella abortus str. 2308
           A]
 gi|255999678|gb|ACU48077.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella microti CCM 4915]
 gi|260095608|gb|EEW79485.1| acriflavin resistance protein [Brucella abortus NCTC 8038]
 gi|260668366|gb|EEX55306.1| acriflavin resistance protein [Brucella abortus bv. 4 str. 292]
 gi|260674939|gb|EEX61760.1| acriflavin resistance protein [Brucella abortus bv. 6 str. 870]
 gi|260873371|gb|EEX80440.1| acriflavin resistance protein [Brucella abortus bv. 9 str. C68]
 gi|260920839|gb|EEX87492.1| acriflavin resistance protein [Brucella ceti B1/94]
 gi|261296946|gb|EEY00443.1| acriflavin resistance protein [Brucella pinnipedialis B2/94]
 gi|261303214|gb|EEY06711.1| acriflavin resistance protein [Brucella pinnipedialis M163/99/10]
 gi|262552687|gb|EEZ08677.1| acriflavin resistance protein [Brucella ceti M490/95/1]
 gi|264660951|gb|EEZ31212.1| acriflavin resistance protein [Brucella pinnipedialis M292/94/1]
 gi|297175573|gb|EFH34920.1| acriflavin resistance protein [Brucella abortus bv. 5 str. B3196]
          Length = 1029

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|225852590|ref|YP_002732823.1| acriflavin resistance protein [Brucella melitensis ATCC 23457]
 gi|256113643|ref|ZP_05454458.1| acriflavin resistance protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|256263917|ref|ZP_05466449.1| acriflavin resistance protein [Brucella melitensis bv. 2 str. 63/9]
 gi|265995004|ref|ZP_06107561.1| acriflavin resistance protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|225640955|gb|ACO00869.1| acriflavin resistance protein [Brucella melitensis ATCC 23457]
 gi|262766117|gb|EEZ11906.1| acriflavin resistance protein [Brucella melitensis bv. 3 str.
           Ether]
 gi|263094062|gb|EEZ17984.1| acriflavin resistance protein [Brucella melitensis bv. 2 str. 63/9]
 gi|326409111|gb|ADZ66176.1| acriflavin resistance protein [Brucella melitensis M28]
 gi|326538817|gb|ADZ87032.1| acriflavin resistance protein [Brucella melitensis M5-90]
          Length = 1029

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 88/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++  
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVF 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|170724832|ref|YP_001758858.1| acriflavin resistance protein [Shewanella woodyi ATCC 51908]
 gi|169810179|gb|ACA84763.1| acriflavin resistance protein [Shewanella woodyi ATCC 51908]
          Length = 1025

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/621 (12%), Positives = 183/621 (29%), Gaps = 44/621 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R       +  ++  +G      N +    +  +P                         
Sbjct: 9   RRPVLAASISFLLLLLG-----FNSMSSMQVREYPEMTNTVVT---------VSTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + + GF+    ++  +                +KIT+    +         +   +  
Sbjct: 55  DANLIQGFITQPLEQALAQADNVDFMTSDSSLGTSKITVYMKLNTDPNGALADILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + + + +  +T  + S++      DQ+ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDSTVDMSTGSQTSVLYISFYSDQINSS--QITDYLERVVKPQLFTINGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I   +    DP+R+     +++++       N           F   +     
Sbjct: 173 KVNLYGGIKYAMRIWLDPARMGAFNLSSSEVMQVLQANNYQSAVGQANGTFTLFNGTADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+                      +                 +    +  +   
Sbjct: 233 QVATVEELK--------------------KLVIASKDGLVVRLGDIAEVSLDKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +     E A  L   ++          +   +  A   S S 
Sbjct: 273 LADGQEAVVVGLDVTPTANPLIVAEDARELMPDIQRNLPVSMKARILYDSSLAIDESISE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +V++V+ + +   +  ++   +I L++I    ++ + G TL L ++  +V
Sbjct: 333 VIKTIGEAALIVIVVITLFLGSLRAVIIPIVTIPLSLIGVAVIMQMFGFTLNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  ++ F +  +G       +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVDRHIKLGETPFRAAIIGTREIAVPVISMTITLAAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID-----INPLSRFFL 533
              G   + FA+T+  ++ IS   A+++   M   I++     +                
Sbjct: 453 GITGSLFKEFALTLAGAVFISGIVALTLSPMMCSKILKPHSTPNRFEQGVERFLEGMTNR 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +     R         I+F+   +   F        + K  + +   A    +L  
Sbjct: 513 YQSMLNAVMERRPVVIAFAFIVFATLPVMFSFIPSELAPNEDKSVVMMMGTAPSTANLDY 572

Query: 594 VRSNLESLQIGDISFQNFDGE 614
           ++SN+  +     S    D  
Sbjct: 573 IQSNMTLVTDIIKSHPESDAS 593



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 74/233 (31%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +                   E   +        + +        +   I   +P+
Sbjct: 253 VRLGDIAEVSLDKSHDVYRALADGQEAVVVGLDVTPTANPLIVAEDARELMPDIQRNLPV 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
           S              E I + I  +   + I +++           +  I T+ L +   
Sbjct: 313 SMKARILYDSSLAIDESISEVIKTIGEAALIVIVVITLFLGSLRAVIIPIVTIPLSLIGV 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                +FG   NL  + A++  IG  V+D +VV + +    +      +          E
Sbjct: 373 AVIMQMFGFTLNLMTLLAMVLAIGLVVDDAIVVVENV---DRHIKLGETPFRAAIIGTRE 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                +  ++       P+A+ G   GS+   FA+ +A  + ++   ++ ++ 
Sbjct: 430 IAVPVISMTITLAAVYAPIALMGGITGSLFKEFALTLAGAVFISGIVALTLSP 482



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 64/164 (39%), Gaps = 10/164 (6%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDI---TKTLGFFALFGIE-FNLTAVAAVLT 728
             ++   + + +  +F+     L  + ++ L I      L +  +FG+   N+     ++T
Sbjct: 853  GLALAIIFLVLASQFESIRDPLVILVSVPLAISGALIALAWTHVFGLSSMNIYTQVGLIT 912

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-A 787
            L+G      +++ +  ++        +S  D I  +    L   + T+ A    ++P+  
Sbjct: 913  LVGLITKHGILMCEVAKEE--QLHNGLSKMDAIKLAATVRLRPILMTTAAMIAGLIPLLF 970

Query: 788  VWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAK 829
              G   +  F I +    G+ +    ++F+   I  ++ +    
Sbjct: 971  AVGAGAVARFNIGLVIVSGLAIGTVFTLFVLPVIYTYLAERHEP 1014


>gi|306843956|ref|ZP_07476551.1| acriflavin resistance protein [Brucella sp. BO1]
 gi|306275711|gb|EFM57435.1| acriflavin resistance protein [Brucella sp. BO1]
          Length = 1029

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAIV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|258543781|ref|ZP_05704015.1| acriflavin resistance protein [Cardiobacterium hominis ATCC 15826]
 gi|258521017|gb|EEV89876.1| acriflavin resistance protein [Cardiobacterium hominis ATCC 15826]
          Length = 1011

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/603 (11%), Positives = 169/603 (28%), Gaps = 42/603 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    V+L+ ++   G      +      + +FP       +           + L   
Sbjct: 9   RNPLVAVLLFILLSLGG-----WHGFHAMRVQQFPDMDFPVVV---------VSVALTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + L        +++   +   + F   +  +   D+V   +  
Sbjct: 55  SPQQLESDVAKKVESRLASLDGVKNVRSTLQTGLSTTVIEFRLEKDLQEAVDEVRSAVGE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D    ++       + ++            A+  S  +  +   ++       
Sbjct: 115 IRSDLPADALDPVISKVGTSGMPLLTFSVAAQG--MDALSLSWFVDDRLSRRLLGIPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   +    DP RL+ L    + ++           G    +   + S     
Sbjct: 173 SVSRVGGLSRTVEVLPDPVRLKALGLPISAVAAQVAALQRDVSGGEAQIGGGKQSVRALG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +I+ + +                     +             +    A      
Sbjct: 233 AQSQAADIADLRV---------------------QSAGGAQRLGDFATVRDGAAEADSHA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +           S    +       A ++A     ++                 
Sbjct: 272 LFDGETVVAFEVVRSRGASEVGVMHAIEAELARVQADFPQFRITK-VYDRATPVEEDYEN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L ++V+F+ +   +  LVA  ++ L+VI    ++ LLG +L + S+  + 
Sbjct: 331 SLDMLVEGGLLAVVVVFVFLRNWRATLVAAVALPLSVIPAFLVMWLLGFSLNIISLLALS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I    R  +S + +           +  +  T +   +   F  
Sbjct: 391 LVIGVLVDDAIVEIENIIRHLRGGKSPYEAAMEAADEIGLAVIATTFTLIAVFLPTAFMS 450

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F  T  +++  S+  A  +   M  ++++ +  + +  +       +    
Sbjct: 451 GVIGQFFRQFGWTAAIAVFFSLAVARLVTPMMAAYVLKAESREVVRRDGALMRAYLAFVG 510

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                R     V I++     S+            D     ++ +       L    +  
Sbjct: 511 FTLRWRWTTLAVTIALFVFSLSLAR-HLPSTFMPDDDMNQSRVSIELTPDATLEDTLAVS 569

Query: 599 ESL 601
           E+ 
Sbjct: 570 EAA 572



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 75/253 (29%), Gaps = 7/253 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V +          + +        S   FDGE      +    G S          + 
Sbjct: 243 LRVQSAGGAQRLGDFATVRDGAAEADSHALFDGETVVAFEVVRSRGASEVGVMHAIEAEL 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITT 699
              +                   E     +  ++    +A+++       W   L A   
Sbjct: 303 ARVQADFPQFRITKVYDRATPVEEDYENSLDMLVEGGLLAVVVVFVFLRNWRATLVAAVA 362

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +        L G   N+ ++ A+  +IG  V+D +V  + +   ++      S  +
Sbjct: 363 LPLSVIPAFLVMWLLGFSLNIISLLALSLVIGVLVDDAIVEIENI---IRHLRGGKSPYE 419

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     + T+       LP A      G     F    A  +  + + +  + 
Sbjct: 420 AAMEAADEIGLAVIATTFTLIAVFLPTAFMSGVIGQFFRQFGWTAAIAVFFSLAVARLVT 479

Query: 817 APILLFIYDWRAK 829
             +  ++    ++
Sbjct: 480 PMMAAYVLKAESR 492



 Score = 56.2 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/207 (11%), Positives = 75/207 (36%), Gaps = 10/207 (4%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
             + + V+   T       ++  +I   ++ +EL    I+ + +    +   + + F +  
Sbjct: 806  ELADAVRNTPTMQNLPPAVRANDIGQAEMMKELFSGFILAMGVGIFCIYAILVLLFHRVL 865

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
                 +  L L I        + G   +++++   + L+G +  + +++ D     +   
Sbjct: 866  QPFTILMALPLSIGGAFAGLLILGSSISMSSMIGFIMLMGIATKNSILLVD--YAIIAER 923

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVV 807
               ++  D +  + ++     + TS+A    + P+ +    G        A  +  G+V 
Sbjct: 924  RDGMNRFDALIDACHKRARPIIMTSIAMGAGMTPLLLGWGSGDPTFPQPMAAAVVSGLVT 983

Query: 808  AASSSIFIAA---PILLFIYDWRAKNA 831
            +   S+ +      ++  +     +  
Sbjct: 984  STLLSLVVIPVVYTLMDDLGRLLRRRK 1010


>gi|256061174|ref|ZP_05451327.1| acriflavin resistance protein [Brucella neotomae 5K33]
 gi|261325178|ref|ZP_05964375.1| acriflavin resistance protein [Brucella neotomae 5K33]
 gi|261301158|gb|EEY04655.1| acriflavin resistance protein [Brucella neotomae 5K33]
          Length = 1029

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|212633273|ref|YP_002309798.1| acriflavin resistance protein [Shewanella piezotolerans WP3]
 gi|212554757|gb|ACJ27211.1| Acriflavin resistance protein [Shewanella piezotolerans WP3]
          Length = 1026

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/516 (12%), Positives = 153/516 (29%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R       +  +I  +G        L    +  +P                         
Sbjct: 9   RRPVLAASISFLILLLGFYS-----LNSMQVREYPEMTNTVVT---------VTTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + + GF+    ++  +                +KIT+    +         +   +  
Sbjct: 55  DSNLIQGFITQPLEQALAQADNVDFMTSDSFLGSSKITVYMKLNTDPNGALADILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T  + S++      DQ+ S   + +  + R    ++   +   
Sbjct: 115 VRSQLPKEAEDPTVDMSTGSQTSVLYISFYSDQINSS--QITDYLERVVKPELFTIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I   +    DP+R+     ++  +       N           F   +     
Sbjct: 173 KVNLYGGIKYAMRIWLDPARMGAFNLSSTDVMNVLQANNYQSAVGQANNTFTLFNGTADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+                      +                ++    +  +   
Sbjct: 233 QVATVAELE--------------------KLVVGSKDGLVIRLGDIADVSLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +       A  +   +           +   +  A   S + 
Sbjct: 273 LADGQEAVVIGLDVTPTANPLVVAADARNMMPDITRNLPVSMKARILYDSSLAIDESINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +V++V+ + +   +  ++   +I L++I    ++ + G TL L ++  +V
Sbjct: 333 VIKTIGEAALIVIVVITLFLGSFRAVIIPIVTIPLSLIGVAVIMQMFGFTLNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVDRHIKLGESPFRAAIIGTREIAVPVISMTITLAAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   + FA+T+  ++ IS   A+++   M   I
Sbjct: 453 GITGSLFKEFALTLAGAVFISGIVALTLSPMMCSKI 488



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 57/146 (39%), Gaps = 6/146 (4%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + I +++       +   +  I T+ L +        +FG   NL  + A++  IG  V
Sbjct: 340 AALIVIVVITLFLGSFRAVIIPIVTIPLSLIGVAVIMQMFGFTLNLMTLLAMVLAIGLVV 399

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +    +      S          E     +  ++       P+A+ G   G
Sbjct: 400 DDAIVVVENV---DRHIKLGESPFRAAIIGTREIAVPVISMTITLAAVYAPIALMGGITG 456

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAA 817
           S+   FA+ +A  + ++   ++ ++ 
Sbjct: 457 SLFKEFALTLAGAVFISGIVALTLSP 482



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 69/187 (36%), Gaps = 11/187 (5%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDI---TK 706
             + + +G           +     ++   + + +  +F+     L  + ++ L I     
Sbjct: 830  YSYDFLGEARQYVTEGSALYATFALALAIIFLVLASQFESLKDPLVILVSVPLAISGALI 889

Query: 707  TLGFFALFGIE-FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LG+  + G+   N+     ++TL+G      +++ +  ++        +S  D I  + 
Sbjct: 890  ALGWTHVMGLSSMNIYTQVGLITLVGLITKHGILMCEVAKEE--QLHNGLSKVDAIKHAA 947

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLF 822
               L   + T+ A    ++P+    G   +  F I +    G+ +    ++F+   I  +
Sbjct: 948  TIRLRPILMTTAAMIAGLIPLLFAVGAGAVARFNIGLVIVSGLAIGTIFTLFVLPVIYTY 1007

Query: 823  IYDWRAK 829
            + +    
Sbjct: 1008 LAERHEP 1014


>gi|188991430|ref|YP_001903440.1| RND Superfamily multidrug resistance protein [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167733190|emb|CAP51388.1| RND Superfamily multidrug resistance protein [Xanthomonas
           campestris pv. campestris]
          Length = 1166

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 77/602 (12%), Positives = 170/602 (28%), Gaps = 52/602 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 28  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +    +V   ++ 
Sbjct: 74  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQAGLEVRDKMEA 133

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ K  +L+        I+        +  +    I                ++
Sbjct: 134 L--SLPLEAKPPVLLRFNPSTEPIMRLVLSPKQAPASDTDAIRQLTGLRRYADEDLKKKL 191

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 192 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLSLPIDNVITRLKEENVNISGGRLEEGSQR 251

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 252 YLVRTVNQFVDLDEIRNMLVTTQSSSGSAADAAMQQMYAIAASTGSQAALAAAAEVQSTS 311

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              +    G           + +          L      +     +   +   T  +  
Sbjct: 312 ASSTSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKEAVELAIYKEGDANTVSTAASLR 371

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                ++A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 372 KRLEQIKATVPGDVEITTIEDQSHFIGHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 431

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +  SV 
Sbjct: 432 ISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLSVL 491

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
            +  +G       +  S +T +   + L F     G   R  A+T+ ++I IS+  ++++
Sbjct: 492 DAAMVGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLVVSMTL 551

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           +  M+  +     M   D     ++      +       R  G  +   F   +  ++  
Sbjct: 552 IP-MLSSLKGAPPMAFPDEPSHPQWQPQQRWLKPVAAGRRGAGASVRYAFFGAAWAVVKV 610

Query: 567 HG 568
             
Sbjct: 611 WR 612



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 6/207 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           + + +++    +     I   E     I   +       VI 
Sbjct: 352 ELAIYKEGDANTVSTAASLRKRLEQIKATVPGDVEITTIEDQSHFIGHAISDVKKDAVIG 411

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 412 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVD 471

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +S  D       E     + +++      LP+       G 
Sbjct: 472 DSIVVLESI---AKARERGLSVLDAAMVGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 528

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    A+ +A  I ++   S+ +   +
Sbjct: 529 LFRDQALTVAIAIAISLVVSMTLIPML 555



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 77/216 (35%), Gaps = 14/216 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +     D      V E+      + +      +  
Sbjct: 908  AAVAEVVATTGPSEIHRADQTRVAIVSASLRDIDLGGAVREVETLVRNDPLAAGVGMHIG 967

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 968  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 1026

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTSISFRDLIDKSINETLGR 771
            G   ++     ++ L+G    + +++ D++   R+        ++ R+ + +     L  
Sbjct: 1027 GKPVSVVVFIGLILLVGLVTKNAIILIDKVNQLREE------GVAKREALIEGARSRLRP 1080

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
             + T++      LP+AV    G  V    AI +  G
Sbjct: 1081 IIMTTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1116


>gi|165923978|ref|ZP_02219810.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii RSA 334]
 gi|165916564|gb|EDR35168.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii RSA 334]
          Length = 1022

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/554 (11%), Positives = 145/554 (26%), Gaps = 31/554 (5%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   V   +    +E  S ++     +    Q ++ I L+         +A+++  
Sbjct: 51  YPGASAKLVESSITTPLEEGISGVQGIDTIISQSFQGESDIKLTLDYGVNVYEVANQIRD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++    +L  +    ++         + L          +       + R  IDQI   
Sbjct: 111 KVEQARVQLPTNINAPVVQVGWGN---MELMDVGFTAPNENPKAIRDYLERNVIDQIEQI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                   +      +    DP ++     +   +       N                 
Sbjct: 168 PGIADVEVAGANQYAMRIWLDPQKMAARGLSVNDVQMAIQNSNVELPAGEIKG------- 220

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                       S I+             +    I  ++ G     +          +  
Sbjct: 221 ------------SSINYPITAETKLNTADQFNNIIVKNDNGQVIRIKDIGQAQLGDDSAD 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +     +        +R         +          G
Sbjct: 269 QSIVTLDGQPGVLLSINNATDANPLDAAKNVNHFLNQIRPHLPNGMKIVPSFDIYAYMHG 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      +  I    V++V+F+ +   +   +   +I + +I +   + LLG ++ + ++
Sbjct: 329 SIHEVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYLLGFSINVITL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I++ E I       +    +   G       +    IT       +
Sbjct: 389 LALVLSIGLVVDDAIVMLENIYRHIENGEKPLIAAIKGSKEITFPVIAMTITLAAVYAPI 448

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPL 528
                      R FA T+  ++LIS F A+++   M                + I+    
Sbjct: 449 GLMQNQAANIFRSFAFTLAGAVLISGFVALTLSPMMCSRFLKAQGGEPKGYSRIIETIYE 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +A    +         ++                  +  G +   V  +  
Sbjct: 509 RMAQGYQKILAAILNKRILVVFAAVLIAVGGFFLAKNIPMAFVPQEDMGFVIAAVSTSSG 568

Query: 589 VDLSVVRSNLESLQ 602
             ++ +   LE + 
Sbjct: 569 SSINTINRGLEQVA 582



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 77/227 (33%), Gaps = 7/227 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++ L                   L        + +   + +     +I   +P       
Sbjct: 259 QAQLGDDSADQSIVTLDGQPGVLLSINNATDANPLDAAKNVNHFLNQIRPHLPNGMKIVP 318

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                      I +  + + I+ + +++ I++   +       I T+ + +  + G   L
Sbjct: 319 SFDIYAYMHGSIHEVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   N+  + A++  IG  V+D +V+ + + ++++           I  S   T     
Sbjct: 379 LGFSINVITLLALVLSIGLVVDDAIVMLENIYRHIENGEK--PLIAAIKGSKEITFPVIA 436

Query: 774 YTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAA 817
            T +       P+ +       +  SFA  +A  ++++   ++ ++ 
Sbjct: 437 MT-ITLAAVYAPIGLMQNQAANIFRSFAFTLAGAVLISGFVALTLSP 482



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/416 (11%), Positives = 101/416 (24%), Gaps = 11/416 (2%)

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G V       +      +   L    ++   A  V  +    D+N    + +    +  
Sbjct: 556 MGFVIAAVSTSSGSSINTINRGLEQVASIFKQAPAVASVVTVADTNAKAFDSVFAMLKPF 615

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI----LISMF 501
           +    S           I         A    F         F +          +    
Sbjct: 616 KDRKQSASQVADVINQKIKQIPGLNAAAFAPSFGGSMQHQLEFYLMGDTYSDLYAVSQKL 675

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
                    +  I    +  S   N      +                            
Sbjct: 676 INQLGNYPGLRVIQSNMRFDSQQYNMTVNRDIAGQLQVNIKDIDNTMAALYGGSKISTFD 735

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR-SNLESLQIGDISFQNFDGEKNFLVR 620
               T+ +           L  +    V+ +  +   L +L                 +R
Sbjct: 736 ANGKTYNVYLQAQENDLHSLASINKFYVNNAQNKLIPLSNLISIKPILSQVVLPHYNRLR 795

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                        +  +V    TE+  L           +    L     +G+I     +
Sbjct: 796 AAQMSAQLAPGYNLGTVVNYLQTELPQLLPANVKYAFTGQAHDLLTSNNSIGLIFLLAMV 855

Query: 681 LIYIWIRFKWYF---ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            IY+ +  ++         +  + L I   +    L G   N+     ++TLIG      
Sbjct: 856 FIYLVLAAQFESFIDPFIILLAVPLSIVGAMASLKLIGGTLNIYTDIGLVTLIGLVSKHG 915

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +++        +L    ++ R+ + K+ +  L   + T+ A     LP+    G  
Sbjct: 916 ILITQFAN---RLQKEGLAMREALLKAASIRLRPILMTTAAMVFGALPLLFSSGGS 968


>gi|160875747|ref|YP_001555063.1| acriflavin resistance protein [Shewanella baltica OS195]
 gi|160861269|gb|ABX49803.1| acriflavin resistance protein [Shewanella baltica OS195]
 gi|315267936|gb|ADT94789.1| acriflavin resistance protein [Shewanella baltica OS678]
          Length = 1085

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/561 (12%), Positives = 152/561 (27%), Gaps = 39/561 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++        +  +   P                    + +  
Sbjct: 9   KRPVTVWMFMLAVILFGMV-----GFSRLAVKLLPDLSYPTLT---------IRTMYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 55  APVEVEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGISEST 180
           +   L +D KK LL+        I+    ++         +       +   ++      
Sbjct: 115 I--ALPLDVKKPLLLRFNPNLDPIMRLALSVPNASEADLKQMRTYAEEELKRRLEALSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++  + +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQEVHIQLNQEKLSQLNLNADDIKRRINEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I G             + + +  +                 I        D 
Sbjct: 213 INLSAGKVIQGDREYLVRTLNQFNSLEELGQVIVYRDEQTLVRLFEVATITDAYKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +        +           V          + S
Sbjct: 273 TRIGSQESIELAIYKEGDANTVAVAKKLRDELVKINQ-DPKQNKLEVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  + + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALMGSLLSMLVIYLFLRNIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IGL VD+ I+V E I     +  S   +   G       IF S +T L   V L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRCRSEGMSKLDAAVTGTKEVAGAIFASTLTTLAVFVPLVFV 451

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G A   F+    L++  ++  ++ +    +  +   +  K++     +     P     
Sbjct: 452 DGIAGALFS-DQALTVTFALLASLLVALTSIPMLASREGFKTLPALIKTTPKDKPTTKMG 510

Query: 541 QFMRARFWGVGISILFSICSI 561
           +F           IL     +
Sbjct: 511 KFKHYSATVFSFPILLMFSYL 531



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 65/220 (29%), Gaps = 6/220 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++      L  +                        + L            V + ++ +
Sbjct: 244 VIVYRDEQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKKLRDE 303

Query: 642 ITEIVPLSTIQNTEIVGPK---ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           + +I         E++  +   I   +       ++ S ++ML+           L    
Sbjct: 304 LVKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSLLSMLVIYLFLRNIIPTLIISI 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  +S  
Sbjct: 364 SIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRCRSEGMSKL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           D       E  G    +++      +P+    G     F+
Sbjct: 421 DAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDGIAGALFS 460



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 90/250 (36%), Gaps = 12/250 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +N+P+ LS V      L    I+  +          L Y             + ++
Sbjct: 826  INPNSNQPIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVAQAQQILSQQ 885

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             +   V        E +         +   + +I++   + + +  +F+     L  +  
Sbjct: 886  VLPASVQARFGGQNEEMEHS-----FQSLKIALILAIFLVYLVMASQFESLLHPLLILFA 940

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + + +  ++    +     ++     ++ L G  VN+ +V+ DR+    +L +  +   D
Sbjct: 941  VPMALAGSVLGLYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRIN---QLRSEGVEKLD 997

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I  +    L   + T++   + +LPMA+    G  V    AI + FG+ ++   ++ + 
Sbjct: 998  AIRAAAKSRLRPIMMTTLTTTLGLLPMALGLGDGSEVRAPMAITVIFGLSLSTLLTLIVL 1057

Query: 817  APILLFIYDW 826
              +       
Sbjct: 1058 PVLYALFDRK 1067


>gi|71276116|ref|ZP_00652396.1| Acriflavin resistance protein [Xylella fastidiosa Dixon]
 gi|71163034|gb|EAO12756.1| Acriflavin resistance protein [Xylella fastidiosa Dixon]
          Length = 1032

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/584 (11%), Positives = 155/584 (26%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  +GL+  L   +      + P    + R   G D            
Sbjct: 9   KRPIGTSLLAIGVFVLGLICYLQLSVAPLPKFQIPVIFVEAR-QAGAD------------ 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        S  +  + + L F  +R  ++ A  V   +  
Sbjct: 56  -ASTMASTVTAPLERYLGQIPGIKRMRSSSSESNSNVFLLFQSNRNIDSAAQDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L               +  I+      D     A              +   +   
Sbjct: 115 AQADLPSGMLPPSYEKANPNDDPIIALALTSDTQSMDA--LYNVADSLLAQHLRQIQGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +  + D   L  L  T  ++       N +    +              
Sbjct: 173 SVDIVGASTPAVRVDVDMHALNALGLTMDQLQNAVRAANVTSPTGLLSNDTRTTEILLNS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                       +   +   R         +           
Sbjct: 233 TISKAAD-------------------FAHLVIATQPNGRIVRLSDIAQVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L     P  +      +      S   
Sbjct: 274 WFNHKRAVVMYVFLRTGANVVETVDRVKAELPTLHTYLPPGTVLTPYFDHTPTIRASLYE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      ++A  ++ L++     ++  L  TL   ++  +V
Sbjct: 334 IQTTLIISLAMVMLTMALFLRRLAPTVIAAATVPLSLAGAAIVMYALDFTLNNVTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG  VD  I++ E I        S   +   G     STI    ++ ++      F  
Sbjct: 394 IAIGFVVDDAIVMIENISRHLNTGMSPLEAALTGAREIGSTIVSITVSLVVVFAPFLFDH 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F IT+  +I+ISM  ++++  A+    +    +        +    +   I
Sbjct: 454 GMIGTLFGEFGITLVAAIIISMLVSLTLTPALCSRFLSAHVVPEKSNGIGAWLERMYLRI 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +  A  + +  ++L ++  + L+    +  G   KG     
Sbjct: 514 LRLYTVALDFSLRHALLLALTPLLLIVLTVMLAGAISKGTFPSQ 557



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 59/153 (38%), Gaps = 11/153 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +IIS   +++ + +  +     + A  T+ L +              N   + A++  IG
Sbjct: 338 LIISLAMVMLTMALFLRRLAPTVIAAATVPLSLAGAAIVMYALDFTLNNVTLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA-FISVLPMAVWG 790
           + V+D +V+ + +    +   T +S  +       E     V  S+    + V    ++ 
Sbjct: 398 FVVDDAIVMIENI---SRHLNTGMSPLEAALTGAREIGSTIV--SITVSLVVVFAPFLFD 452

Query: 791 GSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
             +I    G F I +   I+++   S+ +   +
Sbjct: 453 HGMIGTLFGEFGITLVAAIIISMLVSLTLTPAL 485



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 78/249 (31%), Gaps = 11/249 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               + V ++ +   +  L    I   N     +    L        A+  +   +K    
Sbjct: 778  RNGKMVPITAIAHQVPGLNPPQIKHDNQYTTMDLSYNLSPGVSIGEAEAIIDATIKGLRL 837

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   I             L+   ++ V I          +       +  ++TL   
Sbjct: 838  PGDIRVAIAEDNDFTNDQMNILLLATLIAVYIVLG------MLYENLIHPITILSTLPAA 891

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L    L   E +  ++ A++ LIG    + +++ D     +      +     + +
Sbjct: 892  GMGALLALYLSHTELSAISMIALILLIGIVKKNAIMMID--FALVAQRERGLEPHAAVRE 949

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +        + TSM A ++ +P+A+    G  +     I M  G++++ S ++     + 
Sbjct: 950  ASIVRFRPIMMTSMVAILAAMPLAISVGEGAELRRPLGIAMIGGLLISQSLTLLSTPALY 1009

Query: 821  LFIYDWRAK 829
            +       +
Sbjct: 1010 VIFSCLSQR 1018


>gi|220921340|ref|YP_002496641.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
 gi|219945946|gb|ACL56338.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
          Length = 1044

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/619 (12%), Positives = 175/619 (28%), Gaps = 27/619 (4%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  S ++        +    +  T+ F      +   + V   +  +
Sbjct: 58  PAELEAQVTKTVEDGVSGVEGVRHISSLVTDGVSVTTVQFRLETNTDRALNDVKDAITRI 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    +  L+       + IV              + S  +      ++       Q
Sbjct: 118 QADLPRSAEAPLIQRVDVVGLPIVTYAAIAPDKTPE--QLSYFVDTIVKRRLQSIRGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP RL+    T   +S                         N  +
Sbjct: 176 VETIGGSEREILVSLDPDRLQAFGLTAVDVSRRLR-------------------GINVDV 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
              + ++ G               +    +     G +   +                 +
Sbjct: 217 AGGRTQLGGRDFAIRALAGARTLDELKGTMIPLASGGQIRLQDLGVVTDTVADRRTFASL 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              PV+  AI   +A+ + +  +  A            P     + + +V   LG+    
Sbjct: 277 DAKPVV--AIGIKRAKGASDVVVAKAVQAKIDQIHAEYPDVKLSLIDTSVDYTLGNYEAA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    A L +IV+F+ +   +  ++   S+ L++      + LLG +L L S   + L
Sbjct: 335 IKTLFEGAALAVIVVFLFLRDLRTTVIVAVSLPLSIFPAFWAMDLLGFSLNLVSFLAVTL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFF 479
             G+ VD +I+  E I    R  +S F +          A   I  + +        +  
Sbjct: 395 STGILVDDSIVEIENIVRHIRMGKSPFQAAIDAAEEIGLAVIAISLTIVAIFAPASFMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   + F IT+ + +L S+  A  +   +  +I++           + R +L    ++
Sbjct: 455 IAGQFFKQFGITIAVQVLFSLLAARFVTPMLAAYIMKPHVHAEKPPGRIERAYLWLVSLS 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DLSVVRSNL 598
           ++               SI S+ LL    L      +  + + +       D   V   +
Sbjct: 515 VRHYLLTVVLGIGIFAASIASMKLLSQGFLPAQDTARSLLSIELPPGSQASDTQRVTDVI 574

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                     ++   +             S+      +  +      +        + + 
Sbjct: 575 VKNLRQIPEVKSIFVDGGRAGGTIEVRRASLILNYTPKTSRSITQRQLEQQVEARLQQIP 634

Query: 659 PKISRELIRKGIVGVIISA 677
                 +   G+  + +  
Sbjct: 635 DIRYWFVDENGLRAISLVV 653



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 55/155 (35%), Gaps = 7/155 (4%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             +   +++++++R      +    +L L I        L G   NL +  AV    G  
Sbjct: 341 GAALAVIVVFLFLR-DLRTTVIVAVSLPLSIFPAFWAMDLLGFSLNLVSFLAVTLSTGIL 399

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG--- 790
           V+D +V  + +   ++      S       +  E     +  S+       P +  G   
Sbjct: 400 VDDSIVEIENI---VRHIRMGKSPFQAAIDAAEEIGLAVIAISLTIVAIFAPASFMGGIA 456

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           G     F I +A  ++ +  ++ F+   +  +I  
Sbjct: 457 GQFFKQFGITIAVQVLFSLLAARFVTPMLAAYIMK 491



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/232 (12%), Positives = 79/232 (34%), Gaps = 7/232 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S +  L   D        ++     +        A   VL+ + +          ++  +
Sbjct: 771 SAVADLGFQDGPANIARYDRERQATVAADLVGDAALGDVLQAINQLPVMKNLPKGVRVNQ 830

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
               +   EL       +    + +   + + F  +   +  + +L L +   +    + 
Sbjct: 831 SGDAENLAELSDGFAEVMRAGLLMVYAVLVMLFGSFLHPITILFSLPLSLGGAVMALLVT 890

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G +        +L L+G    + +++ +   ++M+     +S  + I  +  +     + 
Sbjct: 891 GKQLTTPVWIGILMLMGIVTKNAIMLVEFAIESMR---HGLSRNEAIIDAGRKRARPIIM 947

Query: 775 TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           T++A    ++P A+    GG      AI +  G++ +   S+     +   +
Sbjct: 948 TTIAMVAGMVPSALAIGAGGEFRAPMAIAVIGGLLFSTVLSLIFVPAVFCLV 999


>gi|220915076|ref|YP_002490384.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
 gi|219952827|gb|ACL63217.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
          Length = 1021

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 88/684 (12%), Positives = 188/684 (27%), Gaps = 47/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  M+   G    L        + ++P  +    I+                
Sbjct: 9   RRPTLAIVVSLMVLLGGTFALL-----ALPVRQYPK-LQSAAIT--------VETRYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               + GF+ +   +  +               ++ I          +    ++   +Q 
Sbjct: 55  AQGLMQGFVTVPLSQAIATADGIEYLSSISSDGRSLIKARLRLDADPDRSLAEIMAKVQQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +    ++   T+   +++      + +     E +   +R         +   
Sbjct: 115 TKYRLPEEAYDPVIEKVTDDPTAVMYVALMSETLP--IPEITDYAVRAVQPLFASVKGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + L    DP RL     T A++       N                     
Sbjct: 173 SAQIMGGRNLSLRVWLDPDRLAAHGLTAAEVGQALTRNNVQIAAG--------------- 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 ++ G     A                    G  +        I        +  
Sbjct: 218 ------QVKGSFTAAAITADTDAQDPEAFRRLVLRDGDPQVRLEDVARIAFGGQDYEESA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +G    +    +     L   L     P                + + 
Sbjct: 272 LINGRPAVVVAVNGTPDANPLDIVRAVTALLPQLERSKPPGLDISNVFDVARFVQAALTE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A +V+IV+F+ +   +  L+   +I L+++   AL+ + G +L L ++  +V
Sbjct: 332 VEHTLVEAAIVVVIVIFLFLGSWRAVLIPMVTIPLSLVGAAALMLVAGFSLNLLTLLAMV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     +  S F +   G       +    +T       +   G
Sbjct: 392 LAIGLVVDDAIVVVENVHRHIEEGASPFEASLRGAREVVGPVIGMTVTLAAVYAPIGLIG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  ++L+S   A+ +   M   +++ +         + + F      
Sbjct: 452 GITGSLFREFAFTLAGAVLVSGVVALCVSPMMSSLLLQPQSQHGGFARRIEQAFARLAEA 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
               +RA      +   F++ ++       L    +F               +  V    
Sbjct: 512 YAVMLRASLRHRALMTAFAVAALAGTVALYLAAEREFA-------PTEDQGTVMEVAKAP 564

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
               +      +   E  F    +      +  +   E     +   V L          
Sbjct: 565 RYANLDYTERYSVRLEAAFRRLPEADTTWVLNGSSQTEPGPHSVFAGVNLVPWDRRSRSA 624

Query: 659 PKISRELIRKGIVGVIISAIAMLI 682
             I  EL   G     +S IA L+
Sbjct: 625 AAIMAELQADGAQNPGLSVIAFLL 648



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/136 (18%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   L  + T+ L +        + G   NL  + A++  IG  V+D +VV + +
Sbjct: 349 LFLGSWRAVLIPMVTIPLSLVGAAALMLVAGFSLNLLTLLAMVLAIGLVVDDAIVVVENV 408

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      S  +   +   E +G  +  ++       P+ + G   GS+   FA  +
Sbjct: 409 H---RHIEEGASPFEASLRGAREVVGPVIGMTVTLAAVYAPIGLIGGITGSLFREFAFTL 465

Query: 802 AFGIVVAASSSIFIAA 817
           A  ++V+   ++ ++ 
Sbjct: 466 AGAVLVSGVVALCVSP 481



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 68/219 (31%), Gaps = 10/219 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                +     PG ++ Q       + +       +               L     V   
Sbjct: 799  NAVTISAVPAPGTTMGQAVAFLQRQAEDLPPGMGTAWLGQSRQFVTEGHRLT----VAFG 854

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++   + + +  +F  +      + ++ L I   L    L     N+     ++TL+G  
Sbjct: 855  LALAVIFLVLAAQFNSFRDPFVILVSVPLSIFGALLPLWLGYTTLNIFTQIGLVTLVGLI 914

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGS 792
                +++     +        +     I ++    L   + T+ A  + ++P+    G  
Sbjct: 915  AKHGILMTAFANE--LQERDGLDRAAAIVEAARIRLRPILMTTAAMVVGLVPLIFASGAG 972

Query: 793  VIGSFAI--PMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                FAI   +  G++V  + ++ +   I   +     +
Sbjct: 973  AASRFAIGAVVVAGLLVGTAFTLIVLPTIYTLLARDHRR 1011


>gi|57866201|ref|YP_187841.1| transporter [Staphylococcus epidermidis RP62A]
 gi|251810019|ref|ZP_04824492.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus epidermidis BCM-HMP0060]
 gi|282874945|ref|ZP_06283820.1| MMPL family protein [Staphylococcus epidermidis SK135]
 gi|293368050|ref|ZP_06614682.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus epidermidis M23864:W2(grey)]
 gi|57636859|gb|AAW53647.1| transporter, putative [Staphylococcus epidermidis RP62A]
 gi|251806470|gb|EES59127.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus epidermidis BCM-HMP0060]
 gi|281296273|gb|EFA88792.1| MMPL family protein [Staphylococcus epidermidis SK135]
 gi|291317740|gb|EFE58154.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329737813|gb|EGG74048.1| MMPL family protein [Staphylococcus epidermidis VCU045]
          Length = 893

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/629 (13%), Positives = 198/629 (31%), Gaps = 58/629 (9%)

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
           H +   A+     H    D   ++   +   +   +       +        +  +N   
Sbjct: 64  HQDSEKASMKIVFHSNKNDGLNNKDTKKDIEDALDNIRQNDDYIQNISNPYDSGQVNDEG 123

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            +  A +S           +  +    L    +    +      G+ +   G  + + G+
Sbjct: 124 DTAIANVSYVVPQTGLKDSSKHIIDKELKDVTDNHNVQIEKTQGGAMNSEPGGTSEIVGI 183

Query: 373 VL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLA 427
           ++  ++L +         +   S  + +  ++ +++LL     +P+      +++G+ + 
Sbjct: 184 IVAFVILLITFGSLIAAGMPIISAIIGLGSSVGIIALLTYIFDIPNFTLTLAVMIGLAVG 243

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           +D ++ +  R +E  +K      ++      A S +  + +T +IA   L   G   +  
Sbjct: 244 IDYSLFILFRFKELKKKGVDTVEAIATAVGTAGSAVIFAGLTVMIAVCGLSLVGIDFLAV 303

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
                 +S+L ++  A++++ A++    +  K+K                  +       
Sbjct: 304 MGFASAISVLFAVLAALTLLPALISIFHKSIKIKDKPTKSKDPKDHSWAKFIVGKPVIAV 363

Query: 548 WGVGISILFSICSICLLFT--------------------HGLNYGIDFKGGIQLGVLANR 587
               I ++ +   +  +                         N+G  + G I + V    
Sbjct: 364 IVSLIILILAAIPVSGMRLGIPDDSLKPTDSSEYKAYKLISDNFGEGYNGQIVMLVNTKD 423

Query: 588 -------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                    DL+ +RS+LE +   D   +    + N        P           +V  
Sbjct: 424 GGSKSTIERDLNNMRSDLEDIDNVDTVSKAQLTDNNNYALFTIIPEKGPNSQSTENLVYD 483

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG--------IVGVIISAIAMLIYIWIRFKWYF 692
                       +        S   I           +   +I  +A  + + +      
Sbjct: 484 LRDYHSQAQEKYDYGTEISGQSVINIDMSEKLNNAIPVFAGVIVVLAFFLLMIVFRSILV 543

Query: 693 ALGAITTLILDITKTLGFF----------ALFGIEFNLT-----AVAAVLTLIGYSVNDK 737
            L A+   IL +  TLGF           +LFGIE          V  +  L G +++ +
Sbjct: 544 PLKAVLGFILSLMATLGFTTLVIQHGFMGSLFGIENTGPLLAFLPVITIGLLFGLAIDYE 603

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           + +  R+ +    Y+ +      I   I E+    V  ++  F   +       S I S 
Sbjct: 604 LFLMTRVHEE---YSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFVFQDDSAIKSM 660

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I + FG++  A        P L  ++  
Sbjct: 661 GIALGFGVLFDAFVVRMTLIPALTKLFGK 689


>gi|21231586|ref|NP_637503.1| transport protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768292|ref|YP_243054.1| transport protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|21113274|gb|AAM41427.1| transport protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573624|gb|AAY49034.1| transport protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 1166

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 71/570 (12%), Positives = 158/570 (27%), Gaps = 51/570 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++   +   GL+      L    ++  P                         
Sbjct: 28  RRRVTIAMITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGA 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R  Q+ + L FA     +    +V   ++ 
Sbjct: 74  APAEIETLVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQAGLEVRDKMEA 133

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-------LSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   L ++ K  +L+        I+        +  +    I                ++
Sbjct: 134 L--SLPLEAKPPVLLRFNPSTEPIMRLVLSPKQAPASDTDAIRQLTGLRRYADEDLKKKL 191

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                         +  ++  + D  +L QL      +       N +  G        R
Sbjct: 192 EPVAGVAAVKVGGGLEDEIQVDIDQQKLAQLSLPIDNVITRLKEENVNISGGRLEEGSQR 251

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKT-------------------------HKPV 269
                     D  EI  + +   +++                                  
Sbjct: 252 YLVRTVNQFVDLDEIRNMLVTTQSSSSSAADAAMQQMYAIAASTGSQAALAAAAEVQSTS 311

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
              +    G           + +          L      +     +   +   T  +  
Sbjct: 312 ASSTSSIAGGMPVRLKDVAQVRQGYKEREAIIRLGGKEAVELAIYKEGDANTVSTAASLR 371

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                ++A           E        + S  K    I   L ++++F+ +  G    V
Sbjct: 372 KRLEQIKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFV 431

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              S+ +++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +  SV 
Sbjct: 432 ISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLSVL 491

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
            +  +G       +  S +T +   + L F     G   R  A+T+ ++I IS+  ++++
Sbjct: 492 DAAMVGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLVVSMTL 551

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +  +             + +          
Sbjct: 552 IPMLSSLKGAPPMAFPDEPSHPQWQPQQRW 581



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 6/207 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           + + +++    +     I   E     I   +       VI 
Sbjct: 352 ELAIYKEGDANTVSTAASLRKRLEQIKATVPGDVEITTIEDQSHFIEHAISDVKKDAVIG 411

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 412 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVD 471

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +S  D       E     + +++      LP+       G 
Sbjct: 472 DSIVVLESI---AKARERGLSVLDAAMVGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 528

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    A+ +A  I ++   S+ +   +
Sbjct: 529 LFRDQALTVAIAIAISLVVSMTLIPML 555



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 77/216 (35%), Gaps = 14/216 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +     D      V E+      + +      +  
Sbjct: 908  AAVAEVVATTGPSEIHRADQTRVAIVSASLRDIDLGGAVREVETLVRNDPLAAGVGMHIG 967

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 968  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 1026

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTSISFRDLIDKSINETLGR 771
            G   ++     ++ L+G    + +++ D++   R+        ++ R+ + +     L  
Sbjct: 1027 GKPVSVVVFIGLILLVGLVTKNAIILIDKVNQLREE------GVAKREALIEGARSRLRP 1080

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
             + T++      LP+AV    G  V    AI +  G
Sbjct: 1081 IIMTTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1116


>gi|317122147|ref|YP_004102150.1| acriflavin resistance protein [Thermaerobacter marianensis DSM
           12885]
 gi|315592127|gb|ADU51423.1| acriflavin resistance protein [Thermaerobacter marianensis DSM
           12885]
          Length = 1041

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/511 (13%), Positives = 136/511 (26%), Gaps = 40/511 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              ++ +L   +  +G        LP   +D  P       +                  
Sbjct: 10  RPVFVTVLVIALVLLGAF-----LLPAMPVDLLPQLELPVVV---------VATSYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  S +          +     + L        +    +V   +  V
Sbjct: 56  PAELEARVVEPLEQAVSTINGVKGVRSIAQTGSALVILELDWGTDLDFTVLEVQKRIDAV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D     ++T       +V      D     A +       +    +   +    
Sbjct: 116 RGILPEDAGSPRVLTLDPSATPVVTVGLTGDLP---AGQLQSLAEDRIAPALEQVDGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP+RL     + A ++                        G   L
Sbjct: 173 VGVVGLRQREVRVVLDPARLEAYGLSPALVARAL--------------------GGGAGL 212

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V       G        +    + + V                    + + LA       
Sbjct: 213 VTAGSVNRGRAELSVRLDAQYTSARDVAQAVIPTPTGAAVRVADVATVEEALADPTQLAY 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L    + Q         +            A LR    P                S    
Sbjct: 273 LDGKPVVQLQVLKATDGNTLAVSRGVERALARLRPQLPPGVELRTILDQGDFIEESVRTV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   + + VL++ +   +  LV    + ++VI + A+L+  G TL + S+ G+++
Sbjct: 333 AEHGLLGGAIAVAVLYLFLGNWRTTLVVGLMLPVSVIGSFAMLAAAGQTLNIVSLGGLLI 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           GIG  VD  I+V E I     +        + G +   + +  S I        +   GG
Sbjct: 393 GIGSLVDFAIVVIESIHRYRMRGTPPLEGAEQGTAEVAAAVTASAIAQGAVFFPMMLTGG 452

Query: 483 ---GAVRGFAITMGLSILISMFTAISIVRAM 510
                    A+ +  S   ++F A++ V  +
Sbjct: 453 LAAELFTPLALAVIFSHAAALFGAVTFVPML 483



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 85/220 (38%), Gaps = 7/220 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +    V++      S    +V   + +++  +   +          +   E  R   + +
Sbjct: 800  DGRRQVQVAVHLDGSRPLGQVSADLSRQLESMDWPAGTTWALAGEAEQMNETFRSLGLSI 859

Query: 674  IISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +F+ +F  L  +  L   +   +   A+  +   +TA+   L L+G 
Sbjct: 860  VLAILLVYLIMAAQFESFFHPLVILFCLPPTVVGAVAGLAVHRVPIGVTALLGFLMLVGV 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG- 791
             +N+ +V+ D       L    +     + ++    L   + T +   + ++P A   G 
Sbjct: 920  VMNNAIVLVD---YTNVLRRRGVPRDQALLQAGPVRLRPILMTMLTTNLGLVPFAYLSGA 976

Query: 792  --SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               ++   A+ + +G++V+   ++ +       + D   +
Sbjct: 977  SSELLRPLAVVVIYGLLVSTLVTLVLVPVAYSLLDDGLRR 1016



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/211 (15%), Positives = 72/211 (34%), Gaps = 4/211 (1%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V              V   + +   ++ P   ++     G  I   +      G++ 
Sbjct: 280 QLQVLKATDGNTLAVSRGVERALARLRPQLPPGVELRTILDQGDFIEESVRTVAEHGLLG 339

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            AIA+ +       W   L     L + +  +    A  G   N+ ++  +L  IG  V+
Sbjct: 340 GAIAVAVLYLFLGNWRTTLVVGLMLPVSVIGSFAMLAAAGQTLNIVSLGGLLIGIGSLVD 399

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +VV + +    +         +  ++   E       +++A      PM + GG    
Sbjct: 400 FAIVVIESIH---RYRMRGTPPLEGAEQGTAEVAAAVTASAIAQGAVFFPMMLTGGLAAE 456

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            F  P+A  ++ + ++++F A   +  +   
Sbjct: 457 LF-TPLALAVIFSHAAALFGAVTFVPMLAAR 486


>gi|323142296|ref|ZP_08077128.1| export membrane protein SecD [Phascolarctobacterium sp. YIT 12067]
 gi|322413180|gb|EFY04067.1| export membrane protein SecD [Phascolarctobacterium sp. YIT 12067]
          Length = 412

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 146/391 (37%), Positives = 234/391 (59%), Gaps = 27/391 (6%)

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           K  L       + +        +V   A+ +S+++I +R++++G++E  IQR G  RI++
Sbjct: 32  KQGLDLQGGTHVVLQAVDTPELKVDDDAVNRSVKVIERRVNELGLTEPVIQRQGKDRIIV 91

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPG +DP +   +LG TA + F                               KV ++G
Sbjct: 92  ELPGVKDPEKAIAMLGRTAMLQF--------------------------KDESGKVVLTG 125

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             L  A A       + VV + F++ G ++F ++T  N+GK +A+ LDG+VLTAPV+ +A
Sbjct: 126 SDLKDAKAQVSQGN-QAVVGLEFNDEGGKKFADLTARNVGKKIAIELDGQVLTAPVVQEA 184

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           I  G AQISG+  +E A  LA +LR+GSLP+K+ ++E R VG  LG DS  K   A   G
Sbjct: 185 ITGGHAQISGSRNVEEAEHLAILLRSGSLPVKIEVMENRTVGPTLGQDSKDKSVKAFSIG 244

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           ++ + +FM++ Y   G+VAD ++ L V+L L ++  LGATLTLP IAGI+L +G+AVD+N
Sbjct: 245 IIGVFVFMLLFYRLAGVVADIALLLYVMLLLLVMRYLGATLTLPGIAGIILSVGMAVDAN 304

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ER +EE ++ +++  ++D GF RA  TI DSN+T ++A  VLF+ G G ++GFA+T
Sbjct: 305 VLIFERFKEEVKRGKTLRSAMDSGFGRAIVTILDSNLTTIMAAAVLFYLGTGPIKGFAVT 364

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           + L  L+SMFTA+++ + ++ F+I     KS
Sbjct: 365 LALGTLLSMFTAVTVTKFLLRFLIYSNITKS 395



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/199 (14%), Positives = 82/199 (41%), Gaps = 4/199 (2%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    +      +  +   +     +     VGP + ++   K +    I  I + +++
Sbjct: 193 SGSRNVEEAEHLAILLRSGSLPVKIEVMENRTVGPTLGQDSKDKSVKAFSIGIIGVFVFM 252

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++    + A   L+L +   L      G    L  +A ++  +G +V+  V++++R 
Sbjct: 253 LLFYRL-AGVVADIALLLYVMLLLLVMRYLGATLTLPGIAGIILSVGMAVDANVLIFERF 311

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           ++ +K      + R  +D      +   + +++   ++   +   G   I  FA+ +A G
Sbjct: 312 KEEVK---RGKTLRSAMDSGFGRAIVTILDSNLTTIMAAAVLFYLGTGPIKGFAVTLALG 368

Query: 805 IVVAASSSIFIAAPILLFI 823
            +++  +++ +   +L F+
Sbjct: 369 TLLSMFTAVTVTKFLLRFL 387



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 45/129 (34%), Gaps = 17/129 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           MR N +   L   +  IG      + L              N I  GLDL+GG+H+VL+ 
Sbjct: 1   MRWNEFGKFLIVALAIIGGFCVYISPL-------------ANSIKQGLDLQGGTHVVLQA 47

Query: 60  VDEDD--FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116
           VD  +    +  +      +   + + G+    +++   ++I +     +  E     + 
Sbjct: 48  VDTPELKVDDDAVNRSVKVIERRVNELGLTEPVIQRQGKDRIIVELPGVKDPEKAIAMLG 107

Query: 117 LFLQGVNSK 125
                    
Sbjct: 108 RTAMLQFKD 116


>gi|220905400|ref|YP_002480712.1| acriflavin resistance protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869699|gb|ACL50034.1| acriflavin resistance protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 1047

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/526 (12%), Positives = 155/526 (29%), Gaps = 32/526 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  +G+L           ++  P+      I +  DL G        D +      
Sbjct: 12  VATVLLMLGMLFFGITGYKNLPVNHLPNVDFPT-IQVMADLAG-------ADPETMAASV 63

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
                 E  + +             + +IT+ FA  R  +  A  V   +     ++  +
Sbjct: 64  ATPLEKEFFT-IAGIDSISSVNSTGRTRITIQFALDRNIDAAALDVQSAIGLAQRRMPAN 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                           +L               +         ++ + E   Q +   + 
Sbjct: 123 MTTPPSFRKVNPADMPILYLRVS-SPTLPLYALNEYADTLIGQRLSMVEGVAQVVVYGQK 181

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +  + DP  L        +++      N+              +  +   + +    
Sbjct: 182 KYAVRVQLDPDELASRGLGIDEVADAVAAANSMLPTGSLEGAQRASAIKSSGQLLNASA- 240

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                                 +     GA          +                   
Sbjct: 241 ------------------FQDTVVAYRNGAPVRLRDLGQVVDSVKQDKQLTWGNGGSPGI 282

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 +   +    +++   L   L     P     V      +   S +  K T  + 
Sbjct: 283 TLAVERQPGTNTVQVVDSIRKLLPGLERQLPPSVALEVFYDRSDSIRHSVADVKFTLVLT 342

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV++V+F+ +      ++   ++ ++VI T A++++LG +L   S+  + L +G  VD
Sbjct: 343 VFLVVLVIFVFLRNLPATIIPSLALPMSVISTFAVMAVLGYSLDNLSLMALTLAVGFVVD 402

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVR 486
             I++ E I       +    +   G +    TI    ++     + + F G   G   R
Sbjct: 403 DAIVMLENIVRHQEMGKDPLTAAYDGSAEIGFTIVSMTVSLAAVFIPVLFMGGIVGRLFR 462

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            FA+ +  +IL S   ++++   +  + ++ +   ++       F+
Sbjct: 463 EFAVVIITAILASGVVSLTLTPMLCAYFLKARGAHAVGRTAGQGFY 508



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 52/141 (36%), Gaps = 6/141 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +     L + +  T    A+ G   +  ++ A+   +G+ V+D +V+ + +   ++    
Sbjct: 361 IIPSLALPMSVISTFAVMAVLGYSLDNLSLMALTLAVGFVVDDAIVMLENI---VRHQEM 417

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
                        E     V  +++     +P+   GG V      FA+ +   I+ +  
Sbjct: 418 GKDPLTAAYDGSAEIGFTIVSMTVSLAAVFIPVLFMGGIVGRLFREFAVVIITAILASGV 477

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            S+ +   +  +    R  +A
Sbjct: 478 VSLTLTPMLCAYFLKARGAHA 498



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 89/237 (37%), Gaps = 6/237 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L  ++ G          +   V + Y     V+  + +  V+     ++P +    ++
Sbjct: 789  DTLVKMEPGVGPIAVNHNGQFPAVTISYNLRPGVSLGQGVAAVEAVARPLLPDTVTAESQ 848

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                     L   G + ++++ + + + + I ++ +   L  ++ L       L    LF
Sbjct: 849  GTAQAFQSSLTGMGWL-LVLAIVVIYLVLGILYESFIHPLTILSGLPSAGFGALATLWLF 907

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G++ NL     V+ L+G    + +++ D   +  + +   +   + I +  +      + 
Sbjct: 908  GMDLNLYGFVGVIMLLGIVKKNAIMMLDFALE-AQRHNPDMEPLEAITRGCHVRFRPIMM 966

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            T++AA +  LP+A+    G        + +  G+  +   +++I      ++     
Sbjct: 967  TTVAALMGALPIAIGIGAGAEARRPLGLAVVGGLCFSQIVTLYITPVYYYYMEKMSR 1023


>gi|45658844|ref|YP_002930.1| acriflavine resistance [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602089|gb|AAS71567.1| acriflavine resistance [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 1103

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/571 (9%), Positives = 162/571 (28%), Gaps = 39/571 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +    ++  +   +A+     +  +D FP                    +    
Sbjct: 9   KRPIF-ICSIVLLMLLTGWVAM----GRMGVDLFPDVNIPVV---------SVATIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  S +          ++  + +   F      +    +    +  
Sbjct: 55  GPEEIEELISKPLEEELSSISGLKKISSRNQEGVSVVFGEFTLDTDIKYAEQQFRDKVGL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL    K+  +V     +  IV      D   +   + + E ++ R   +   +   
Sbjct: 115 VKPKLPTGIKEPKVVRFDPADQPIVRLALFADLDQAKLYDLAKETVKAR---LEQVQGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++  E D ++L      T  ++        +     F       S     
Sbjct: 172 SVKLIGGTRREIQIELDRNKLISYQMPTVVIANRLKTAGLNVPVGKFESGSKETSYRTLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR-------------- 287
             E   +I    ++ +    +    K +  +            +                
Sbjct: 232 RYESLSQIENTIVSFSGEVGNAVLIKQLGTVRDGTEDEETIGYLWASQGEGVEEKVSFLT 291

Query: 288 --DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA---AMLRAGSLPI 342
              N  K         +             ++  +     +                   
Sbjct: 292 KIGNFFKGKKENSATAIKETKPALFIDVYKQSGANTVSVADEVLKRIGKLNEGIQNLEGK 351

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
               +          +         I   L +I ++  +   +  ++   ++  +++   
Sbjct: 352 PKIRLIRDGSKWIRYNVEDVTEAIVIGILLAVITVYFFLGNFRSTVITGLALPNSMLGAF 411

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
            L+  +G T+ + ++  + L +GL VD  I+V E I  +  + + V  + + G +     
Sbjct: 412 VLMWTMGFTINVMTLLALSLAVGLLVDDAIVVRENIFRKLEEGKGVMEAAETGTTEVTLA 471

Query: 463 IFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +  +++T +   + + F     G   + F +T+  ++LIS+F  +++   +  +      
Sbjct: 472 VIGTSLTVIAVFLPVGFLSGIVGQFFKQFGLTVVFAMLISLFDGLAVAPMLSAYFAGKID 531

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
             +     +  F      +  Q+ +     +
Sbjct: 532 HNAKPNKAVELFDKFQTWLERQYGKVMKVAL 562



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 9/194 (4%)

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           + +           G K  R  +      ++I  +  +I ++     +   +     L  
Sbjct: 346 QNLEGKPKIRLIRDGSKWIRYNVEDVTEAIVIGILLAVITVYFFLGNFRSTVITGLALPN 405

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN-MKLYTTSISFRDLI 761
            +          G   N+  + A+   +G  V+D +VV    R+N  +         +  
Sbjct: 406 SMLGAFVLMWTMGFTINVMTLLALSLAVGLLVDDAIVV----RENIFRKLEEGKGVMEAA 461

Query: 762 DKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +    E     + TS+      L    + G  G     F + + F ++++    + +A  
Sbjct: 462 ETGTTEVTLAVIGTSLTVIAVFLPVGFLSGIVGQFFKQFGLTVVFAMLISLFDGLAVAPM 521

Query: 819 ILLFIYDWRAKNAR 832
           +  +       NA+
Sbjct: 522 LSAYFAGKIDHNAK 535



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 58/566 (10%), Positives = 156/566 (27%), Gaps = 49/566 (8%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            ++    +++L   I  + +L            +     +        LDL  G+ L    
Sbjct: 562  LKRPGIVLLLSLGIFILSILSLKLVKSTFLPANDQGEFLVT------LDLPPGTSL---- 611

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM------RQIQNKITLSFADSRFKENIADK 114
               +          + L+  + +  +   ++            + ++  DS+ ++    +
Sbjct: 612  ---NGTKQVADQVLEVLKK-IPEMEMIAVTIGKPDGGEPNAGTLAITLVDSKKRKLTTTQ 667

Query: 115  VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            V   ++ +              +     I          + +      S +++ +     
Sbjct: 668  VKDQIRELLKPFEYARPAVSDYSAVGGGIQYPFQLVIKGENLGEMEAYSKKVLTKLK--- 724

Query: 175  GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             +S+             +     D  +++ +                  +   F  R + 
Sbjct: 725  SLSDLADLDTDYRAGKPEYQIHLDNMKMQLVGVLPGVAGSELRYQIAGDEVSKFYDRGIE 784

Query: 235  DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                 +   + +               +       + +  +  G  R   + R       
Sbjct: 785  YVVKMRLRPDQRNLRMAYDQTKVPNIANKLIPLSAISVGKETAGPSRINRIDRART---- 840

Query: 295  AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                             I        G    +   I   +LR    P        +    
Sbjct: 841  -----------------IVINANLAPGGAVQDATRIADEILRKELPPPPGIRYNFQGQSE 883

Query: 355  DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD-FSIFLNVILTLALLSLLGATLT 413
            D             +A + + ++   +       V   F+I   +      L+L    L 
Sbjct: 884  DFKELLANIVLAFGLALVFIYLVLASLYESFITPVTILFAIPPAISGAFFALALTREMLN 943

Query: 414  LPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            L S+ G++L +GL   ++IL+ +   +    K  S   ++          I  +++  ++
Sbjct: 944  LFSMIGLILLMGLVAKNSILLVDYAMQASREKGMSRNDAIYEAGLVRLRPILMTSLAMIM 1003

Query: 473  ATVVL---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             TV +   F     +     I +   +++S    + +V ++  FI R+++       P  
Sbjct: 1004 GTVPIALGFGEAAKSRTAMGIAIIGGLILSTVVTLVVVPSIFGFIDRFREWIESKFRPEY 1063

Query: 530  RFFLIPDCIAIQFMRARFWGVGISIL 555
                     A    + +F+    + +
Sbjct: 1064 DMNASMVQHAPSTNKQKFYEKEWASM 1089



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/198 (13%), Positives = 73/198 (36%), Gaps = 7/198 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK-ISRELIRKGIVG 672
            ++   + +        A      +  + + + +P          G     +EL+   ++ 
Sbjct: 836  DRARTIVINANLAPGGAVQDATRIADEILRKELPPPPGIRYNFQGQSEDFKELLANIVLA 895

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
              ++ + + + +   ++ +   +  +  +   I+      AL     NL ++  ++ L+G
Sbjct: 896  FGLALVFIYLVLASLYESFITPVTILFAIPPAISGAFFALALTREMLNLFSMIGLILLMG 955

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
                + +++ D            +S  D I ++    L   + TS+A  +  +P+A+  G
Sbjct: 956  LVAKNSILLVD--YAMQASREKGMSRNDAIYEAGLVRLRPILMTSLAMIMGTVPIALGFG 1013

Query: 792  SVIGS---FAIPMAFGIV 806
                S     I +  G++
Sbjct: 1014 EAAKSRTAMGIAIIGGLI 1031


>gi|304409112|ref|ZP_07390733.1| acriflavin resistance protein [Shewanella baltica OS183]
 gi|307303115|ref|ZP_07582870.1| acriflavin resistance protein [Shewanella baltica BA175]
 gi|304352933|gb|EFM17330.1| acriflavin resistance protein [Shewanella baltica OS183]
 gi|306913475|gb|EFN43897.1| acriflavin resistance protein [Shewanella baltica BA175]
          Length = 1085

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/561 (11%), Positives = 151/561 (26%), Gaps = 39/561 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++        +  +   P                    + +  
Sbjct: 9   KRPVTVWMFMLAVILFGMV-----GFSRLAVKLLPDLSYPTLT---------IRTMYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 55  APVEVEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGISEST 180
           +   L +D KK LL+        I+    ++         +       +   ++      
Sbjct: 115 I--ALPLDVKKPLLLRFNPNLDPIMRLALSVPNASEADLKQMRTYAEEELKRRLEALSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++  + +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQEVHIQLNQEKLSQLNLNADDIKRRINEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     + G             +   +  +                 I        D 
Sbjct: 213 INLSAGKVVQGDREYLVRTLNQFNSLDELGQVIVYRDEQTLVRLFEVATITDAYKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +        +           V          + S
Sbjct: 273 TRIGSQESIELAIYKEGDANTVAVAKKLRDELVKINQ-DPKQNKLEVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  + + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALMGSLLSMLVIYLFLRNIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IGL VD+ I+V E I     +  S   +   G       IF S +T L   V L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRCRSEGMSKLDAAVTGTKEVAGAIFASTLTTLAVFVPLVFV 451

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G A   F+    L++  ++  ++ +    +  +   +  K++     +     P     
Sbjct: 452 DGIAGALFS-DQALTVTFALLASLLVALTSIPMLASREGFKTLPALIKTTPKDKPTTKMG 510

Query: 541 QFMRARFWGVGISILFSICSI 561
           +F           IL     +
Sbjct: 511 KFKHYSATVFSFPILLMFSYL 531



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 65/220 (29%), Gaps = 6/220 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++      L  +                        + L            V + ++ +
Sbjct: 244 VIVYRDEQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKKLRDE 303

Query: 642 ITEIVPLSTIQNTEIVGPK---ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           + +I         E++  +   I   +       ++ S ++ML+           L    
Sbjct: 304 LVKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSLLSMLVIYLFLRNIIPTLIISI 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  +S  
Sbjct: 364 SIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRCRSEGMSKL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           D       E  G    +++      +P+    G     F+
Sbjct: 421 DAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDGIAGALFS 460



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 90/250 (36%), Gaps = 12/250 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +N+P+ LS V      L    I+  +          L Y             + ++
Sbjct: 826  INPNSNQPIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVAQAQQILSQQ 885

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             +   V        E +         +   + +I++   + + +  +F+     L  +  
Sbjct: 886  VLPASVQARFGGQNEEMEHS-----FQSLKIALILAIFLVYLVMASQFESLLHPLLILFA 940

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + + +  ++    +     ++     ++ L G  VN+ +V+ DR+    +L +  +   D
Sbjct: 941  VPMALAGSVLGLYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRIN---QLRSEGVEKLD 997

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I  +    L   + T++   + +LPMA+    G  V    AI + FG+ ++   ++ + 
Sbjct: 998  AIRAAAKSRLRPIMMTTLTTTLGLLPMALGLGDGSEVRAPMAITVIFGLSLSTLLTLIVL 1057

Query: 817  APILLFIYDW 826
              +       
Sbjct: 1058 PVLYALFDRK 1067


>gi|254719155|ref|ZP_05180966.1| Acriflavin resistance protein [Brucella sp. 83/13]
 gi|265984149|ref|ZP_06096884.1| acriflavin resistance protein [Brucella sp. 83/13]
 gi|306838146|ref|ZP_07471002.1| acriflavin resistance protein [Brucella sp. NF 2653]
 gi|264662741|gb|EEZ33002.1| acriflavin resistance protein [Brucella sp. 83/13]
 gi|306406736|gb|EFM62959.1| acriflavin resistance protein [Brucella sp. NF 2653]
          Length = 1029

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 88/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAIV 857

Query: 679  AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F  +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFGSFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|323701475|ref|ZP_08113148.1| acriflavin resistance protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323533484|gb|EGB23350.1| acriflavin resistance protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 1036

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/576 (12%), Positives = 172/576 (29%), Gaps = 40/576 (6%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGF 69
                + ++I           + FP   P              +++          V   
Sbjct: 14  IFALVLAVIIFGLYARNNMKEELFPETAPPL-----------VNVITAYPGASPADVAKN 62

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           L    +E  + +        S +   + I + F   +  +  A  V   +  +   L   
Sbjct: 63  LSQPLEEEFTTIDGAKTIKSSSQNGLSIIKVEFQYGKDVDEAAVDVQNAISRIKKDLPAG 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
             +  ++  +     ++    +         E       +  D++ +++           
Sbjct: 123 IAEPQVMKFSSSNRPVLTVGLSGKG--KDLTEIRRLADNEIKDRLQLTQGVAAVDVIGGH 180

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    D S+L  L     K++      N +  G          +        D + +
Sbjct: 181 KRQINVLLDRSKLASLNIPLEKVAGAIRNTNITDPGGNLIQDENEYTVRFTQETVDPITL 240

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                                D+  D  G +  +      I            L      
Sbjct: 241 --------------------ADLIIDNRGGKPVYLRDVATIQDGTVENRSAYRLGGQPSI 280

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 K   +    ++      A ++     +   + E+ ++      D++   T   +
Sbjct: 281 AIQILKKDDANTVEVVDRVKDKLAEIKKDYPDVTFAVAEDDSIFTKQVVDNMSATTRDAL 340

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
               LIVL + ++     +V   S+ L+++ T+ L+SL G +  L +++ ++L +G+ VD
Sbjct: 341 ILTALIVL-LFLVTINESIVVALSMPLSLLCTMGLMSLTGMSFNLITLSALILSVGIVVD 399

Query: 430 SNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAV 485
             I+V E I   +    + +  +   G +           T +I  + L F     G   
Sbjct: 400 DAIVVVENIMRHHHDLGKDIKSAAIDGTNEIMLANVAGTSTIIIVLIPLLFITGFVGRIF 459

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
              A T+  +++ S+  +++I+  + + +   +  +   +              ++    
Sbjct: 460 GPMAKTLVFAMISSLLVSLTIIPLLTVLLGGKRWARGERVVARVISPFTRAVDKLRDFYV 519

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           R  G+ +   F    + +         +   G   L
Sbjct: 520 RILGMAMKARFITVLVAVGIFVLSLRLLGIVGMEVL 555



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 94/248 (37%), Gaps = 16/248 (6%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R           +   +       + +Q    D      V++ VK K+ EI        
Sbjct: 255 LRDVATIQDGTVENRSAYRLGGQPSIAIQILKKDDANTVEVVDRVKDKLAEIKKDYPDVT 314

Query: 654 TEIVGPK------ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             +          +   +       +I++A+ +L+++        ++    ++ L +  T
Sbjct: 315 FAVAEDDSIFTKQVVDNMSATTRDALILTALIVLLFLV---TINESIVVALSMPLSLLCT 371

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G  +L G+ FNL  ++A++  +G  V+D +VV + +      +      +       NE
Sbjct: 372 MGLMSLTGMSFNLITLSALILSVGIVVDDAIVVVENI--MRHHHDLGKDIKSAAIDGTNE 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL----LFI 823
            +  +V  +    I ++P+    G V   F  PMA  +V A  SS+ ++  I+    + +
Sbjct: 430 IMLANVAGTSTIIIVLIPLLFITGFVGRIFG-PMAKTLVFAMISSLLVSLTIIPLLTVLL 488

Query: 824 YDWRAKNA 831
              R    
Sbjct: 489 GGKRWARG 496



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 46/371 (12%), Positives = 108/371 (29%), Gaps = 9/371 (2%)

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
           ER     +    +   ++   +     I +S  TA   TV              +     
Sbjct: 633 ERQETIWQIEDRLRGEIEKIPNIETFVIKESGGTAKSTTVAPIDIKISGEDSEILNHLAE 692

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW-GVGISI 554
            ++    AI     +           ++ +N      L      +         G+  S 
Sbjct: 693 QVMEKVKAIPGAVNIYKSWSPNTPEINVVVNEEKATRLGLYPANVAKEVFASLEGMKASE 752

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
           L  I       T              L V    P  +S+    + +++            
Sbjct: 753 LQVINEKNADITLRYQEKDRQSVKDLLSVNITSPAGVSIPLRAVAAVETSKGPNVVTAEN 812

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               + +     D      + ++ K+     +P             +       G   ++
Sbjct: 813 LQRTINIYGYTMDRPFSHVIKDIQKELDGIEIPEGYSVQIVGENADLKESAGDLG-KSLV 871

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           ++ I + + +  +F+ +   +  + T+ +          L G   +++A   V+ L+G  
Sbjct: 872 MAVIGVYLLLVAQFRSFLHPVTIMLTIPMVFIGVAVALMLTGKSVSMSAFLGVILLVGTV 931

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWG 790
           V + +V+ D +   +K   T I     I +S+       + T+++    + P+      G
Sbjct: 932 VRNGIVLIDYI---IKARETGIDRSTAITESVKIRFRPIMMTALSNVAGMFPLAAEWALG 988

Query: 791 GSVIGSFAIPM 801
                  A  +
Sbjct: 989 SERFSPLATTV 999


>gi|295689185|ref|YP_003592878.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
 gi|295431088|gb|ADG10260.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
          Length = 1028

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/681 (11%), Positives = 185/681 (27%), Gaps = 46/681 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +V+L++      LLIA      Q  +   P+                  +     
Sbjct: 11  RNPIPVVVLFAG-----LLIAGAAAFLQLPIKLLPNTAVPVV---------SVTVTQNGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +        ++ Q  +   + F      +   D V   +  
Sbjct: 57  APSEIEKQITRPIEGGLASVAGVRHVSSTVTQGVSSTVVEFELGVDLQKAVDDVRSVVDR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L        +         I+    +         E S  +       +   +S  
Sbjct: 117 TRVELPPGIDPPTIDRVDFDSAPILTYVVSG--GGLSIAELSWFVDDTVSRALQGGKSVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    DP R+  L  T  +++                         +  
Sbjct: 175 QVSRVGGVEQEVNVILDPDRMAALGVTAPQINNAL-------------------FQASLD 215

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +  + G            +  + + +++    G R         I +  A      
Sbjct: 216 DTGGRAALGGGEQTIRVLASAERA-EAIRNLTIPLAGGRYVALSDVAEIAQGAAEERSFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +         Q S      +     A LR     +               S S 
Sbjct: 275 RLDGRPVVGFQVQKTRQGSDVTAERSVREAIAKLRKAHPDMDFTE-VLSTAKQTRESFSS 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L  +V+F+ +   +   +A  ++ L++I T A++ LLG +L   ++  + 
Sbjct: 334 TLHVLIEGMVLAALVVFLFLKDWRATAIAAVAMPLSLIPTFAVMQLLGFSLNGLTLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+  E I +      S + +  +G       +  +  T +   + + F G
Sbjct: 394 LVIGILVDDAIVEIENIEKRIEAGLSPYRASLVGADAIGLAVVATTATIVAVFLPVSFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F +T+ +S+  S+  A  +   M  + ++ K      +  +  F+      
Sbjct: 454 GIVGQFFREFGLTVAISVSFSLLVARLVTPVMAAYFLKPKPPGHAVVERMPGFYRRTLDW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           A++           ++                      G   + + A      + +  ++
Sbjct: 514 ALKN--RWKTAGIGALAAVASLGLAATRPIGFQPTQDAGFFYITLTAPPGASAAAMEQSV 571

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            +             E + ++ +             + +   +  +           +  
Sbjct: 572 AAA----TRALMAQPETHHVMAVVGDGNALSEAILTVVLADHRARDTDTFMRQVRPLLRQ 627

Query: 659 PKISRELIRKGIVGVIISAIA 679
               R   + G     +    
Sbjct: 628 IPDVRIATQTGFAAADVVITL 648



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 74/245 (30%), Gaps = 9/245 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 D++ +       +                   Q     +    R      +K  
Sbjct: 253 RYVALSDVAEIAQGAAEERSFARLDGRPVVGFQVQKTRQGSDVTAERSVREAIAKLRKAH 312

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
             +  + + +T     +     +   I G++++A+ + +++     W     A   + L 
Sbjct: 313 PDMDFTEVLSTAKQTRESFSSTLHVLIEGMVLAALVVFLFL---KDWRATAIAAVAMPLS 369

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T     L G   N   + A+  +IG  V+D +V  + +    K     +S       
Sbjct: 370 LIPTFAVMQLLGFSLNGLTLLALTLVIGILVDDAIVEIENI---EKRIEAGLSPYRASLV 426

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             +      V T+       LP++  G   G     F + +A  +  +   +  +   + 
Sbjct: 427 GADAIGLAVVATTATIVAVFLPVSFMGGIVGQFFREFGLTVAISVSFSLLVARLVTPVMA 486

Query: 821 LFIYD 825
            +   
Sbjct: 487 AYFLK 491



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 59/153 (38%), Gaps = 7/153 (4%)

Query: 670 IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +  +      +   + + F   F  +  ++ L L         AL G+   L  +  +L 
Sbjct: 838 VWALGAGVFLIYGVMCLLFHSLFKPITILSALPLVALGAFAGLALAGLPITLPVLIGLLM 897

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           L+G +  + +++ + + +  K      +    + ++  E     V T++A    ++P A+
Sbjct: 898 LLGLAGKNSILLVEFVIEAEKAGMDRWT---ALHEACRERGRPIVMTTLAMIAGMIPTAL 954

Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
               G +     +I +  G+V +   S+ +   
Sbjct: 955 GLGEGAAFRKPMSIAVIGGLVSSTLLSLVLVPA 987


>gi|147677273|ref|YP_001211488.1| cation/multidrug efflux pump [Pelotomaculum thermopropionicum SI]
 gi|146273370|dbj|BAF59119.1| cation/multidrug efflux pump [Pelotomaculum thermopropionicum SI]
          Length = 1039

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/589 (11%), Positives = 154/589 (26%), Gaps = 44/589 (7%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
            ++      +GL+        +   D FP                             V 
Sbjct: 2   TMVIMFFIVLGLV-----GYSRLSSDLFPKTNIPFVT---------IVTTYPGAGAREVE 47

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +E  S +        +  +      L F  S   +  A      +  V  +L 
Sbjct: 48  SQVVDPIEEAVSSIPGLKRTTTTASEGMAITILEFTMSTDSDIAAIDAQKAIDSVLYRLP 107

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            D  K ++         I+    + ++ +      + +I      Q+  +    +     
Sbjct: 108 KDADKPIVQKYNMNAQPIMTIVLSGNRPLPSIYSAAKDI---VKQQLETTPGVGKVTLVG 164

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
               ++    + +++     +  ++     L N +             +           
Sbjct: 165 GQEREIQVLVNRAKMEGYGLSINQVVNRLSLENINMPAGELKQPSTDFTVRLLGEYRSLS 224

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           E+  I +                                   +   LA       L    
Sbjct: 225 ELEEIRIPFP---------------------GGSVALKEIATVKDGLAEATQYARLNGRQ 263

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
               I   +   S   T E        ++         +V + N     G+    K +  
Sbjct: 264 AIAVIIQKQNDASIVDTSEAVLRQLEQIKKQLPKDMELVVTQNNADFIKGALDDTKRSLL 323

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               +  +VL   +   +       +I  ++I T  ++   G +  L S+ G+ L +G+ 
Sbjct: 324 EGVLMTGVVLMFFLREWRSVFTVMLAIPTSIISTFLMMYFAGFSFNLLSLMGLTLCVGIL 383

Query: 428 VDSNILVNERIREENRKNQSVFCSLDM---GFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           VD +I+V E I       +    +          A   I   ++   +    +    G  
Sbjct: 384 VDDSIVVLENIHRHRTMGKEPERAAIDGRLEIGMAAVAITMQDVVVFMPIAFMSGLVGQF 443

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
            R F +T+  + L S+F + ++   +   +        +  +            A     
Sbjct: 444 FRQFGLTVVFATLFSLFVSFTLTPMLSARLGGNGGRAGLPDSIPRLSNFAGRFSAFGRRS 503

Query: 545 ---ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               R   +         +  +     ++ G+ F G I    +AN    
Sbjct: 504 VAAYRRLLLWSLGHRRAVAAAVAGALVVSLGLIFTGAIGSEFMANPDQS 552



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 77/246 (31%), Gaps = 11/246 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +    P     ++           + Q         + +  Q  +  +     E V ++
Sbjct: 228 EIRIPFPGGSVALKEIATVKDGLAEATQYARLNGRQAIAVIIQKQNDASIVDTSEAVLRQ 287

Query: 642 ITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAM-LIYIWIRFKWYFALGAI 697
           + +I          +V    +  +   +      ++   +   ++ ++   +W      +
Sbjct: 288 LEQIKKQLPKDMELVVTQNNADFIKGALDDTKRSLLEGVLMTGVVLMFFLREWRSVFTVM 347

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +   I  T       G  FNL ++  +   +G  V+D +VV + +    +  T     
Sbjct: 348 LAIPTSIISTFLMMYFAGFSFNLLSLMGLTLCVGILVDDSIVVLENIH---RHRTMGKEP 404

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                    E    +V  +M   +  +P+A      G     F + + F  + +   S F
Sbjct: 405 ERAAIDGRLEIGMAAVAITMQDVVVFMPIAFMSGLVGQFFRQFGLTVVFATLFSLFVS-F 463

Query: 815 IAAPIL 820
              P+L
Sbjct: 464 TLTPML 469



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 72/230 (31%), Gaps = 24/230 (10%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                + +            +   +   +  +      +       K   E     I  +I
Sbjct: 796  NRQRLIVISANTKDRPLGDIAGDINAALAGLKIPEGYRVQFYGTQKDMEETFSDLIKALI 855

Query: 675  ISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++   + +I + +   +   L  + +L       L    + G  FN+ ++  ++ L G +
Sbjct: 856  LAVTLVYMILVILYESFLTPLVRMLSLPCGAIGALWALFITGNTFNMMSLIGLVMLDGLA 915

Query: 734  -------VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
                   ++              L    ++ R+ + ++    L   V T+      +LP 
Sbjct: 916  AKSGTLLIDYT----------NTLMKRGLTLREALLEAGTTRLRPIVMTAATMVGGMLPT 965

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSS---IFIAAPILLFIYDWRAKN 830
            A+    G     S AI +  G+V     +   I +A  +L     W  + 
Sbjct: 966  ALALAEGSEYRKSMAIVIIGGLVTTTLLTPVLIPVAYTLLEDFKGWLGRK 1015


>gi|325521747|gb|EGD00496.1| acriflavin resistance protein [Burkholderia sp. TJI49]
          Length = 1096

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/515 (12%), Positives = 145/515 (28%), Gaps = 38/515 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G L        +  +   P+      +             +   
Sbjct: 9   RRPVATTLLAIAILLSGALA-----YFRMPVAPLPNVAYPVIV---------VQATMAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +              + I + F   R     A  V   +Q 
Sbjct: 55  SPDIMASTVAEPLERRLGTIADVEELTSISTVGSSMIVIEFGLDRDINGAARDVEAAIQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    + N          + V+    +        +           Q+   +   
Sbjct: 115 ARADLPTTLRANPTYRQYNPADAPVMV-LALTSDTLTKAQLYDSADSVIQQQLSQIKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +  E +P ++         +       N             R    +  
Sbjct: 174 QITLGGGALPSVRVELNPGKVNSYGIGLEDVRASLAAANADSPKGHLDQNGRRYEILSND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                        P  D+                ++      + +  
Sbjct: 234 QIGKAA--------------------PYRDLVIAYRNGAAVQLRDIADVRDSNENIRNAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I   +   +   T++       M++A         +   +  +   S S 
Sbjct: 274 LYNGKSAVLVIVFPEPGSNVVQTVQQIRARLPMIQAALPSSVHIGIAVDHSQSINASVSD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV+ V+F+ +L  +  L+   ++ L+++ T   + LLG ++   S+  + 
Sbjct: 334 TTRTLFLAVLLVIGVVFVFLLSPRAALIPAVALPLSIVGTFGPMFLLGYSIDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +G G  VD  ++V E I        +   +   G S    T+   +++ +   + +    
Sbjct: 394 IGTGFVVDDAVVVLENIMRYVEAGYAPKVAALRGSSEVAFTVVSMSLSLIAVFLPILLMP 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIF 513
           G        FA+T+ ++IL+SM  ++++   M  +
Sbjct: 454 GIVGLLFHEFAVTLSIAILLSMVVSLTVTPTMCAY 488



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/185 (16%), Positives = 70/185 (37%), Gaps = 9/185 (4%)

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           ++  +   V +    +          +  R   + V++    + +++        AL   
Sbjct: 307 IQAALPSSVHIGIAVDHSQSINASVSDTTRTLFLAVLLVIGVVFVFLL---SPRAALIPA 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             L L I  T G   L G   +  ++ A+    G+ V+D VVV + +   M+      + 
Sbjct: 364 VALPLSIVGTFGPMFLLGYSIDNLSLMALTIGTGFVVDDAVVVLENI---MRYVEAGYAP 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIF 814
           +    +  +E     V  S++     LP+ +  G V      FA+ ++  I+++   S+ 
Sbjct: 421 KVAALRGSSEVAFTVVSMSLSLIAVFLPILLMPGIVGLLFHEFAVTLSIAILLSMVVSLT 480

Query: 815 IAAPI 819
           +   +
Sbjct: 481 VTPTM 485



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 58/132 (43%), Gaps = 6/132 (4%)

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I  TL    +FG+ F++ ++   + LIG    + +++ D               R  I +
Sbjct: 965  IGATLALL-VFGVPFSVISMIGFILLIGIVKKNGIMMVD--VAIQLQRDEGADARRAIHE 1021

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + T+ AA +  LP+A+    G S+       +  G++++   +++    I 
Sbjct: 1022 AAVRRLRPIMMTTAAAVLGALPLALAIGQGASLRQPLGATVMGGLLISQIFTLYTTPVIY 1081

Query: 821  LFIYDWRAKNAR 832
            L++   RA+ AR
Sbjct: 1082 LYLDRLRARIAR 1093


>gi|116075727|ref|ZP_01472986.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           RS9916]
 gi|116067042|gb|EAU72797.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           RS9916]
          Length = 1030

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/504 (12%), Positives = 138/504 (27%), Gaps = 30/504 (5%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +   ++   GL+           L+  P   P                       + V  
Sbjct: 2   VCSLLVLLAGLVSLA-----GLGLEDLPQLAPTRV---------SVRATFPAAGPEVVEQ 47

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    ++  S L+       + RQ    ++L F      E  A KV   +     +L  
Sbjct: 48  SVTAVLEQQLSGLEGLESMSSTSRQGGASLSLRFDSG-DPELNAIKVQNEVSLATRRLPQ 106

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
              +  +      +  +++   +  + +         + +   + +  +           
Sbjct: 107 SVSRQGITVRRSSDDILLILGFSTPKELYAPTFVGGWLDQNLRNALRSTPGVGDIRIFGS 166

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
             +      DP +L Q   T+  ++      N        G             VE +  
Sbjct: 167 SDLAFRLWLDPQKLEQFNLTSNDITASLAEQNVLAAIGSIGEAPAPRGQAFSLPVEAEGR 226

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +       A              ++  + G                +       L     
Sbjct: 227 LRSQSDFEAM------------VVNRTDQGGLVRLGDVGRVELGTTSYGSSALNLQGERT 274

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                  +   +              L     P                +      T   
Sbjct: 275 VAVGIYQRDGANALAVSRAVRSELKRLEESFPPGLTMQTIVDVADTVQANLDRTTATLRD 334

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              LVL +L + +   +  L+   ++ + +I +L ++ L G+TL    + G+VL  G+ V
Sbjct: 335 AVLLVLALLLLFLGRWRLALIPGIAVPVALIGSLVVIRLSGSTLNSLILFGLVLATGIVV 394

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR-- 486
           D  I+V+E I     +  S   + D   +     +  +++      V +    G   R  
Sbjct: 395 DDAIVVSEDIAGRIEQGASSQRAADDAMAELGGAVIATSLVLAAVFVPVLLIPGSIGRLY 454

Query: 487 -GFAITMGLSILISMFTAISIVRA 509
              A+ +  +I+ S F A++    
Sbjct: 455 EPIALAISGAIVFSTFNALTFTPM 478



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +W  AL     + + +  +L    L G   N   +  ++   G  V+D +VV + +    
Sbjct: 349 RWRLALIPGIAVPVALIGSLVVIRLSGSTLNSLILFGLVLATGIVVDDAIVVSEDI---A 405

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                  S +   D ++ E  G  + TS+      +P+ +  GS+       A+ ++  I
Sbjct: 406 GRIEQGASSQRAADDAMAELGGAVIATSLVLAAVFVPVLLIPGSIGRLYEPIALAISGAI 465

Query: 806 VVAASSSIFIAA 817
           V +  +++    
Sbjct: 466 VFSTFNALTFTP 477



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/122 (11%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++     +L L+  +  + +++ +      +     +   + I  +    +   + 
Sbjct: 907  GLALDVYGQMGLLVLVSLAAKNGILIVEFAN---QRLAQGMELLEAIQSAAVNRMRPILL 963

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++ +    LP+ +    G +   S    +  G++V+   S+F+   +   +   +    
Sbjct: 964  TAITSLAGFLPLLLASGTGSASRISIGTVVFSGLLVSTLLSLFVVPAMYWLLKRPQRPQQ 1023

Query: 832  RI 833
             I
Sbjct: 1024 EI 1025


>gi|217973006|ref|YP_002357757.1| acriflavin resistance protein [Shewanella baltica OS223]
 gi|217498141|gb|ACK46334.1| acriflavin resistance protein [Shewanella baltica OS223]
          Length = 1085

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 68/561 (12%), Positives = 151/561 (26%), Gaps = 39/561 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++        +  +   P                    + +  
Sbjct: 9   KRPVTVWMFMLAVILFGMV-----GFSRLAVKLLPDLSYPTLT---------IRTMYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 55  APVEVEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGISEST 180
           +   L +D KK LL+        I+    ++         +       +   ++      
Sbjct: 115 I--ALPLDVKKPLLLRFNPNLDPIMRLALSVPNASEADLKQMRTYAEEELKRRLEALSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++  + +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQEVHIQLNQEKLSQLNLNADDIKRRINEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I G             +   +  +                 I        D 
Sbjct: 213 INLSAGKVIQGDREYLVRTLNQFNSLDELGQVIVYRDEQTLVRLFEVATITDAYKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +        +           V          + S
Sbjct: 273 TRIGSQESIELAIYKEGDANTVAVAKKLRDELVKINQ-DPKQNKLEVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  + + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALMGSLLSMLVIYLFLRNIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IGL VD+ I+V E I     +  S   +   G       IF S +T L   V L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRCRSEGMSKLDAAVTGTKEVAGAIFASTLTTLAVFVPLVFV 451

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G A   F+    L++  ++  ++ +    +  +   +  K++     +     P     
Sbjct: 452 DGIAGALFS-DQALTVTFALLASLLVALTSIPMLASREGFKTLPALIKTTPKDKPTTKMG 510

Query: 541 QFMRARFWGVGISILFSICSI 561
           +F           IL     +
Sbjct: 511 KFKHYSATVFSFPILLMFSYL 531



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 65/220 (29%), Gaps = 6/220 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++      L  +                        + L            V + ++ +
Sbjct: 244 VIVYRDEQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKKLRDE 303

Query: 642 ITEIVPLSTIQNTEIVGPK---ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           + +I         E++  +   I   +       ++ S ++ML+           L    
Sbjct: 304 LVKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSLLSMLVIYLFLRNIIPTLIISI 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  +S  
Sbjct: 364 SIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRCRSEGMSKL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           D       E  G    +++      +P+    G     F+
Sbjct: 421 DAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDGIAGALFS 460



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 90/250 (36%), Gaps = 12/250 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +N+P+ LS V      L    I+  +          L Y             + ++
Sbjct: 826  INPNSNQPIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVAQAQQILSQQ 885

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             +   V        E +         +   + +I++   + + +  +F+     L  +  
Sbjct: 886  VLPASVQARFGGQNEEMEHS-----FQSLKIALILAIFLVYLVMASQFESLLHPLLILFA 940

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + + +  ++    +     ++     ++ L G  VN+ +V+ DR+    +L +  +   D
Sbjct: 941  VPMALAGSVLGLYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRIN---QLRSEGVEKLD 997

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I  +    L   + T++   + +LPMA+    G  V    AI + FG+ ++   ++ + 
Sbjct: 998  AIRAAAKSRLRPIMMTTLTTTLGLLPMALGLGDGSEVRAPMAITVIFGLSLSTLLTLIVL 1057

Query: 817  APILLFIYDW 826
              +       
Sbjct: 1058 PVLYALFDRK 1067


>gi|189912934|ref|YP_001964823.1| Efflux pump, AcrB family [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|189913259|ref|YP_001964488.1| Putative acriflavine resistance protein D; putative transmembrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
 gi|167777610|gb|ABZ95910.1| Efflux pump, AcrB family [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167781327|gb|ABZ99624.1| Putative acriflavine resistance protein D; putative transmembrane
           protein [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
          Length = 1067

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/634 (9%), Positives = 173/634 (27%), Gaps = 42/634 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   ++  L  ++   G +      L +  +D FP       +            V    
Sbjct: 9   KRPIFISSLVIIMVITGYIS-----LKRIGVDLFPDINIPFVV---------VSTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  S +          ++  + +   F+ +   +    +V      
Sbjct: 55  GPEEIETSISKPLEEELSSISGLKRITSRNQEGISLVFAEFSLTTDIKYAEQQVRDKTAR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V        K+ L+      +  I+      D       + + E   +   ++    +  
Sbjct: 115 VKPLFPESSKEPLVQRFDPSDQPIMRISLFADLPEGELYDLAKE---KIKTKLEQVNNVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++  E D +++         +         +             S     
Sbjct: 172 AVKIIGGSRREIHIELDRNKINAYQVPALAIGNQIKNSGVNIPAGKVEGGDKETSFRTVA 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG- 300
             E   +I    ++           K +  +       +    +      +         
Sbjct: 232 KYESLSQIENTVVSFGGEFGRGVLVKDLGLVKDTLQDRQTLGLLYAPIKTEEHEEPSIIG 291

Query: 301 ----------RVLTAPVINQAIPSGKAQISGNFTIE---TAGILAAMLRAGSLPIKLNIV 347
                     +              ++  +     +   +                  I+
Sbjct: 292 KLLFKYDAPKKERVQKKALFLDVYKQSGANTVEVADGILSKIDTINDQIKDYKGAPKVIL 351

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                     +         +   L ++V+++ +   +  L+   ++  +++    ++  
Sbjct: 352 IRDGSKWIRANIEDVTIAIILGIFLAVLVVYLFLGNVRSTLITGMALPNSMLGAFIIMYA 411

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +G T+ + ++  + L +GL VD  I+V E I  +  + +SV  +   G       +  ++
Sbjct: 412 MGFTMNVMTLLALSLAVGLLVDDAIVVRENIFRKLEEGESVIVAARKGTEEVTLAVIGTS 471

Query: 468 ITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----- 519
           +T +   + + F     G   + F +T+  +++IS+F  +++   +  +           
Sbjct: 472 LTVIAVFLPIGFLSGIVGQFFKQFGLTVVFAMIISLFDGLTVAPMLSAYFAGKNDIHKEK 531

Query: 520 ---MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
              +++ D        +    +     +     +   +        L F        + +
Sbjct: 532 NIVLRNFDKFQDFLDRMYGIIMKFALKKPWAIILLTFLTLITSIFSLAFVKKTFLPANDQ 591

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
           G   + V       L      +E +Q   I    
Sbjct: 592 GEFMVNVEMAPGTSLHGTSEMVEQIQNEIIKNVP 625



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 59/179 (32%), Gaps = 9/179 (5%)

Query: 658 GPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           G K  R  I    + +I+   +A+L+           L     L   +          G 
Sbjct: 355 GSKWIRANIEDVTIAIILGIFLAVLVVYLFLGNVRSTLITGMALPNSMLGAFIIMYAMGF 414

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYT 775
             N+  + A+   +G  V+D +VV    R+N  +      S      K   E     + T
Sbjct: 415 TMNVMTLLALSLAVGLLVDDAIVV----RENIFRKLEEGESVIVAARKGTEEVTLAVIGT 470

Query: 776 SMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           S+      LP+       G     F + + F ++++    + +A  +  +       + 
Sbjct: 471 SLTVIAVFLPIGFLSGIVGQFFKQFGLTVVFAMIISLFDGLTVAPMLSAYFAGKNDIHK 529



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 95/254 (37%), Gaps = 7/254 (2%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                     +  +  + +   +      +    +++ +V +        A     E   K
Sbjct: 798  YETRVPNIQNKLIPLNAIAVGKESSSPARIIREDRSRVVPINANLAPGGAIASASESAVK 857

Query: 641  KITEIVPLSTIQNTEIVGPK-ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
             + + +P         VG     +EL++  ++   ++ I + + +   ++ +   +  + 
Sbjct: 858  ILKDKLPPPPGITYSFVGQSEDFKELLQNIVLAFGMALIFIYLVLASLYESFITPITILF 917

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             +   I+      AL G   NL ++  ++ L+G    + +++ D     + +    +S  
Sbjct: 918  AIPPAISGAFFALALTGEMLNLFSMIGLILLMGLVAKNSILLVD--HAMLAMKEHGMSRD 975

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFI 815
            + I  +  + L   + TS+A     LP+A+  G    S     I +  G++++   ++ +
Sbjct: 976  EAIFDAGAKRLRPILMTSLAMIAGTLPIALGIGEASKSRTAMGIAIIGGLILSTLITLIV 1035

Query: 816  AAPILLFIYDWRAK 829
               +  +I   R K
Sbjct: 1036 VPAVFGYIDRLREK 1049


>gi|167577933|ref|ZP_02370807.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis TXDOH]
          Length = 1036

 Score =  143 bits (360), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/608 (11%), Positives = 181/608 (29%), Gaps = 42/608 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL   +        + ++P A+    IS+  D  G S       
Sbjct: 22  RRPVLSLVFSLLILLVGLRALM-----SLPVRQYP-ALESATISVATDYPGASQ------ 69

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     +  +          +  Q ++ +      +   +    +V   +Q 
Sbjct: 70  --DLMQGFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQ 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     + +  ++R     +       
Sbjct: 128 VKYKLPADAYDSVITKLTDAPTAVMYLGFASDTL--SIPQITDYVVRVAQPLVTTVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D +RL     +   ++      N                     
Sbjct: 186 SAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANT 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D    +                   + +     G           +           
Sbjct: 246 DLTDVGAFN------------------EMVVKSAPNGGGLVRLKDVATVEIGGENYNSSA 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +   G +   +                      S + 
Sbjct: 288 LMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVQIANMFDGARFVNASIAE 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L+++ + AL+   G +L L ++  +V
Sbjct: 348 VRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMV 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +  +G     S +     T +     +   G
Sbjct: 408 LAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++L+S   A+++   +   ++  +       K+I+         
Sbjct: 468 GLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHA 527

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + + +   +            + +G I + V A +  +L  
Sbjct: 528 YRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDY 587

Query: 594 VRSNLESL 601
           +      +
Sbjct: 588 MERYAPDI 595



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 9/204 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            VL  +++     V ++ + +          E+       + I  + + +++     +  
Sbjct: 316 AVLPAMERNKPASVQIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLG---SFRA 372

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 373 VIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIE 429

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                         E     +           P+ + G   GS+   FA  +A  ++V+ 
Sbjct: 430 QGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSG 489

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ ++  +   +   R    R+
Sbjct: 490 IVALTLSPMLGSLLLTSRMSEGRV 513



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L I   L    L     N+     ++TLIG 
Sbjct: 865  GFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N       +  R+ I+++    L   + T+ A    ++P+    G 
Sbjct: 925  ISKHGILMVS--FANDLQRHEGLDRREAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 982

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V    ++F+   +  F+  
Sbjct: 983  GAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAK 1018


>gi|78065777|ref|YP_368546.1| acriflavin resistance protein [Burkholderia sp. 383]
 gi|77966522|gb|ABB07902.1| Acriflavin resistance protein [Burkholderia sp. 383]
          Length = 1037

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 80/679 (11%), Positives = 187/679 (27%), Gaps = 45/679 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLAGLVALRFLPLAALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PEVMTSSVTAPLERQFGQMPSLNQMSSQSSAGSSVITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + VL+   +        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPVLT-LAVTSKTLPLTQVQDLADTRLAMKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P+ L Q       +       N +     F      D     Y 
Sbjct: 175 VSLSGGNRPAVRIQANPTALAQYGMNLDDLRTTISNLNVNTPKGNF------DGPTRAYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         +         G  
Sbjct: 229 INANDQLTSADQY--------------NSAVVAYKNGRPVMLTDVATVVAGSENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +   T++        L+          +          +    
Sbjct: 275 VNKEPAIILNVQRQPGANVIQTVDAIKAQLPKLQETLPGALDVQIVTDRTTMIRAAVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V+++ +      ++   S+ L++I TLA++ + G +L   S+  + +
Sbjct: 335 QFELLLAVGLVVLVMYLFLANIYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGETGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   IA
Sbjct: 455 VVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHSPPPESHRFEARVHQAIDWVIA 514

Query: 540 -------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +  ++  +  ++     +     G IQ    A + +   
Sbjct: 515 RYAVALEWVLNRQRSTLVVALLTLALTGLLYVYVPKGFFPAQDTGVIQAITQAPQSISYG 574

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    ++L    +   N +   +F+         +  +  +    +   +E        
Sbjct: 575 AMAERQQALAAEILKDPNVESLTSFIGVDGSNITLNSGRMLINLKARDDRSETAAQIIRD 634

Query: 653 NTEIVGPKISRELIRKGIV 671
               V       L  + + 
Sbjct: 635 LQHRVANITGISLFMQSVQ 653



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    + G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANIYATIIPSLSVPLSLIGTLAVMYMAGFSLNNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGETGLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAIVSLTLVP 483



 Score = 41.6 bits (95), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                R+ I ++        + T++AA +  +P+ V    G  +     I +A G++V+  
Sbjct: 941  GKPPREAIYQACLLRFRPILMTTLAALLGAVPLIVGSGAGSELRQPLGIAIAGGLIVSQV 1000

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++F    I L       +
Sbjct: 1001 LTLFTTPVIYLGFDSLARR 1019


>gi|218437944|ref|YP_002376273.1| heavy metal efflux pump, CzcA family [Cyanothece sp. PCC 7424]
 gi|218170672|gb|ACK69405.1| heavy metal efflux pump, CzcA family [Cyanothece sp. PCC 7424]
          Length = 1053

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 176/595 (29%), Gaps = 48/595 (8%)

Query: 1   MRNN---PWLVIL-YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           ++N+    WL+++   ++   G++        Q  LD FP   P          +     
Sbjct: 10  LKNSIAQRWLIVVGAILVTVWGVISV-----TQMPLDVFPEFAPP---------QVDIQT 55

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                  + V   + +  +   + L        S +   + + + F            VT
Sbjct: 56  EAPGLAPEEVEAQITVPVESAVNGLPGVTTVRSSSKVGLSMVQVVFNQDADIYKARQSVT 115

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID-QVISHAIEQSMEIIRQRIDQIG 175
             LQ + ++L        +        +I+     ++ Q  +  ++    +     +QI 
Sbjct: 116 ERLQQITNQLPQVAHPPEISPLVSPLGTILQYAFTVNGQGQTSVMDLRRLVEVTLSNQIL 175

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 Q         Q     DP +LR L  +  ++                       
Sbjct: 176 SVPGVSQVTIYGGDERQEQVLVDPEKLRSLGVSLTEVRDAAR------------------ 217

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G          I G            K+ + +        G +         +    A
Sbjct: 218 --GANSNAPGGFLIRGGQELLIRGIGQVKSVEDLQQSVIKVQGGKPILLKDVAEVKTASA 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +               + + +  +      +    +   L+             R     
Sbjct: 276 LKRGDASFNGQPAVVLMINKQPDVDTPTVTKKVEAVIDSLQPTFPTDVQINRTFRQSNFI 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +     G+      +V +++ + ++  +   +   +I L++++ L  +   G  +   
Sbjct: 336 DSAIRNVSGSLIQGIIIVSVIMLLFLMNWRTAAITLSAIPLSLLIGLMFMKAFGLGINTM 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNIT 469
           ++ G+V+ IG  VD +I+  E      R NQ        F  +          +  S + 
Sbjct: 396 TLGGLVVAIGSVVDDSIVDMENCYRGLRTNQAQGNPKHPFQVVYDTSVEVRLAVIFSTVI 455

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++    +F      G       +   LSI  S   A+++  A+   ++  + +      
Sbjct: 456 IIVVFAPIFSLTGVEGRIFAPMGLAYLLSIAASTLVAMTLSPALCAILLANQTLPQEGTF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  +   +    ++A    +G+++   + ++ ++ + G  +  +F+    +
Sbjct: 516 ISRLAERLYRPLLKFSLKAPHIILGLALASLVATLAIVPSLGRVFLPEFQEKSMV 570



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/260 (15%), Positives = 84/260 (32%), Gaps = 9/260 (3%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            ++      + V   +P+ L  V     +  +              L+  +    D+   
Sbjct: 245 SVEDLQQSVIKVQGGKPILLKDVAEVKTASALKRGDASFNGQPAVVLMINKQPDVDTPTV 304

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKW 690
           T+ +E V   +    P     N            IR     +I   I + +I +     W
Sbjct: 305 TKKVEAVIDSLQPTFPTDVQINRTFRQSNFIDSAIRNVSGSLIQGIIIVSVIMLLFLMNW 364

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MRK 746
             A   ++ + L +   L F   FG+  N   +  ++  IG  V+D +V  +     +R 
Sbjct: 365 RTAAITLSAIPLSLLIGLMFMKAFGLGINTMTLGGLVVAIGSVVDDSIVDMENCYRGLRT 424

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAF 803
           N         F+ + D S+   L     T +   +   P+    G     FA   +    
Sbjct: 425 NQAQGNPKHPFQVVYDTSVEVRLAVIFST-VIIIVVFAPIFSLTGVEGRIFAPMGLAYLL 483

Query: 804 GIVVAASSSIFIAAPILLFI 823
            I  +   ++ ++  +   +
Sbjct: 484 SIAASTLVAMTLSPALCAIL 503



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 61/152 (40%), Gaps = 10/152 (6%)

Query: 688  FKWYFALGAITTLILDI--TKTLGFFA--LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
            F    +L A   ++L++      G  +  L G   ++ ++   +TL G +V + +++ D 
Sbjct: 884  FFSVKSLPATIAIMLNLPLALVGGVVSIALTGGVISIASLIGFITLFGVAVRNGLLLVDN 943

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPMAVWGGSVIGSFAIP 800
                   +   +  +D I K   E +   + T++ +    + +   +  G  ++   AI 
Sbjct: 944  YN---SKFAQGMRLKDTIFKGSLERVNAILMTALTSALGMLPLAIASGAGNEILQPLAIV 1000

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +  G++ + + ++ +   +      W     +
Sbjct: 1001 VLGGLITSTALTLLVIPALYAKFGKWLIPKQK 1032


>gi|126461668|ref|YP_001042782.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17029]
 gi|126103332|gb|ABN76010.1| acriflavin resistance protein [Rhodobacter sphaeroides ATCC 17029]
          Length = 1048

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/516 (12%), Positives = 147/516 (28%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L ++I   GL       L  + +   P                      +  
Sbjct: 22  RRPILAFVLNALILIAGLAA-----LYGADVRELPDVDSPVIT---------VTTTFDGA 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   S +        S R  ++++T+ F D    +  A  +   +  
Sbjct: 68  SSETIDQEVTDEIEGAASRVAGVKSISSSSRFGRSQVTVEFNDDTNLDVAASDMRDSISR 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D  +  +V       +++            A E +  +  Q   ++  +    
Sbjct: 128 IRNNLPDDADEPRIVKADANSEAVMRVAVTSA--RRSAQELTQIVEDQIESRLLAAPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D   L     T A +                             
Sbjct: 186 DLQIYGDRTPIFRVDVDQMLLASRGLTLADLRTALGNVAYDAPAGSLTSDRQSLVVRTTA 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V        + +                        A          +           
Sbjct: 246 TVTTPAAFEALEI------------------------APDVRLGDVATVELGPEPGASYL 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +     +    + A L+A         V   +     G+   
Sbjct: 282 RANGENGVGLGIIRQAQSNTLEISKAVREIVAGLQADLPQDVRIFVTSDDATFINGAIHE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   +V+ ++++ +   +  L+   +I + ++ TLA + + G ++ + ++  +V
Sbjct: 342 VEIALGLSVLIVVAIIYLFLRDMRATLIPTLAIPVALVGTLAAIWIAGFSINILTLLALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+V E I     +      +  +G  + +  +  +  T     + L F  
Sbjct: 402 LATGMVVDDAIVVLENIVRWRAQGIGPRAAAVLGTQQVFFAVIATTTTLAAVFIPLSFLP 461

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F  T+ +S+L+S  TA+S+   +    
Sbjct: 462 GQTGGLFREFGFTLAISVLLSSVTALSLCPVLASRF 497



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 79/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  V +     + G    +        L  ++    +++  ++ +  +   +
Sbjct: 256 LEIAPDVRLGDVATVELGPEPGASYLRANGENGVGLGIIRQAQSNTLEISKAVREIVAGL 315

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTLI 701
              +P                  I +  + + +S  I + I           L     + 
Sbjct: 316 QADLPQDVRIFVTSDDATFINGAIHEVEIALGLSVLIVVAIIYLFLRDMRATLIPTLAIP 375

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  TL    + G   N+  + A++   G  V+D +VV + +   ++     I  R   
Sbjct: 376 VALVGTLAAIWIAGFSINILTLLALVLATGMVVDDAIVVLENI---VRWRAQGIGPRAAA 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
                +     + T+       +P++   G        F   +A  +++++ +++ +   
Sbjct: 433 VLGTQQVFFAVIATTTTLAAVFIPLSFLPGQTGGLFREFGFTLAISVLLSSVTALSLCPV 492

Query: 819 I 819
           +
Sbjct: 493 L 493



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 666  IRKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTA 722
               G+      + + +L+ +  +F+ + +   +   +  +      FAL   G   N+ +
Sbjct: 855  TSSGLTATFGFAIVIVLLVLAAQFESFVSAFIVMATV-PLGLACAIFALVATGGSLNVYS 913

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ L+G    + +++ +      +L    +  R  I+ +    L   + T +A  + 
Sbjct: 914  QIGLVLLVGIMAKNGILIVEFAN---QLRDEGLPVRRAIEDACAIRLRPVMMTMIATVLG 970

Query: 783  VLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             LP+    G+   +       +  G+ +A  +++++     L +       A
Sbjct: 971  GLPLVFAAGAGAEAREVLGWIIVGGLGLATVATLYLTPVAYLLLAGLSRPKA 1022


>gi|254714167|ref|ZP_05175978.1| Acriflavin resistance protein [Brucella ceti M644/93/1]
 gi|254717602|ref|ZP_05179413.1| Acriflavin resistance protein [Brucella ceti M13/05/1]
 gi|261219435|ref|ZP_05933716.1| acriflavin resistance protein [Brucella ceti M13/05/1]
 gi|261321931|ref|ZP_05961128.1| acriflavin resistance protein [Brucella ceti M644/93/1]
 gi|260924524|gb|EEX91092.1| acriflavin resistance protein [Brucella ceti M13/05/1]
 gi|261294621|gb|EEX98117.1| acriflavin resistance protein [Brucella ceti M644/93/1]
          Length = 1029

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPGGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVVIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 88/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +   I +    ++F+      FI   
Sbjct: 976  YSMGLVIFTDITIGTIFTLFVVPMFYTFIAKK 1007


>gi|254697451|ref|ZP_05159279.1| acriflavin resistance protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260761874|ref|ZP_05874217.1| acriflavin resistance protein [Brucella abortus bv. 2 str. 86/8/59]
 gi|260672306|gb|EEX59127.1| acriflavin resistance protein [Brucella abortus bv. 2 str. 86/8/59]
          Length = 1029

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIEPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|224418271|ref|ZP_03656277.1| preprotein translocase subunit SecD [Helicobacter canadensis MIT
           98-5491]
 gi|253827595|ref|ZP_04870480.1| protein export protein SecD [Helicobacter canadensis MIT 98-5491]
 gi|313141804|ref|ZP_07803997.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|253511001|gb|EES89660.1| protein export protein SecD [Helicobacter canadensis MIT 98-5491]
 gi|313130835|gb|EFR48452.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 525

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 150/534 (28%), Positives = 278/534 (52%), Gaps = 38/534 (7%)

Query: 1   MRNN-PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+ +    +  + +    G+ +++P+               +  ++L          +L 
Sbjct: 1   MKKSFNTKLFSFIIAALFGIALSIPSLFQTQGPKITLGLDLQGGLNL----------LLG 50

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           V  ++ V       +  +  +  +E I +  +R     +     DS  K  I + +    
Sbjct: 51  VKTEEAVKTRYASLASGINFYALEEQILLDGLRVDLESVVFELLDSNEKTKIDNYLKEI- 109

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                       + L V     + ++  ++  I  + ++AIEQ++  IR R+DQ G+SE 
Sbjct: 110 ------------QGLNVLEDNLKYTLTFTEAEIISIENYAIEQAIGNIRNRLDQFGLSEP 157

Query: 180 TIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR----- 231
           ++ + G+  IL+QLPG +   D  R  +L+     +    V  + + +            
Sbjct: 158 SVTKQGTDSILVQLPGIKTQEDEQRALELISKGGHLQMMAVDESRNARVHTMTELEAESY 217

Query: 232 -----FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                   ++   + L++    + G  L  A A +D    +P+++ + +  G + F + +
Sbjct: 218 GDVILPFVNNPNQKILLKAIPILDGAMLTDARAAYDQNG-QPIINFTLNAQGGKIFGDFS 276

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
             N+G  +AVVLDG+V +APVI + I  G  QISG F+++ A  +A  LR+G+LP  + +
Sbjct: 277 GKNVGNRMAVVLDGKVYSAPVIRERIGGGSGQISGGFSVQEASDIAIALRSGALPAPITL 336

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +E+R+VG  LG+DSI     A+++G VL+++FM+  YG  G++A+ ++ +N++L +A+++
Sbjct: 337 LEKRSVGPSLGADSIKASMIALISGAVLVIIFMVFYYGIAGIIANIAMVVNILLVIAVMA 396

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           L GATLTLP +AGI+L +G+AVD+N+++NERIRE  R  ++   +++ G++ A   IFDS
Sbjct: 397 LFGATLTLPGMAGIILTVGMAVDANVIINERIREGFRAGENFIKAMENGYANASRAIFDS 456

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           N+T+LIA V+L+ FG GA++GFAITM + I+ S+ TAI     +   +      
Sbjct: 457 NLTSLIAAVLLYMFGTGAIKGFAITMSIGIIASVITAIVGTHGIFRLLQDRIIK 510



 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 82/174 (47%), Gaps = 4/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I+  ++ +I  A+ ++I++   +     + A   ++++I   +   ALFG
Sbjct: 341 SVGPSLGADSIKASMIALISGAVLVIIFMVFYYGI-AGIIANIAMVVNILLVIAVMALFG 399

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++ +R+R+  +      +F   ++            +
Sbjct: 400 ATLTLPGMAGIILTVGMAVDANVIINERIREGFRA---GENFIKAMENGYANASRAIFDS 456

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++ + I+ + + ++G   I  FAI M+ GI+ +  ++I     I   + D   K
Sbjct: 457 NLTSLIAAVLLYMFGTGAIKGFAITMSIGIIASVITAIVGTHGIFRLLQDRIIK 510


>gi|86157901|ref|YP_464686.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774412|gb|ABC81249.1| Acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1028

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/510 (12%), Positives = 144/510 (28%), Gaps = 40/510 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L   +   GL     N  P+  +D+ P                    VL   +
Sbjct: 10  RPVFTAMLVLAVVVFGL-----NAYPKIGVDQLPDVDVPVVTVT---------TVLPGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +E  + L           +  +++ L F+     +  A  V   +Q  
Sbjct: 56  PESIERDVSDPLEEALNGLAGLESMRSVNVESVSQVVLQFSLETAVDVAAQDVRDRVQAT 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            SKL  D ++ ++         I+    +           + +++      +        
Sbjct: 116 LSKLPGDAEQPIVEKLDVGAAPILTLALSGPVPPEELTRLAEDVL---KPALQRQGGVGS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP+RLR      ++++      +                      
Sbjct: 173 VEVVGGREREIRIVVDPARLRTFGVAASEVAQAVRGGSVDVPAGRAEDPRAEVVVKVSGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                E+                     D+     G          ++    A       
Sbjct: 233 ARTVDEL--------------------RDVVVATPGGAPVRLRDVADVVDGPAEARSSAA 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   ++  +     E      + L           V   N      S    
Sbjct: 273 DDGRPAVALVVKKQSGANTVEVAERVTSSLSGLEKLLPGGAQLRVVRDNAKFIRSSIDGV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K    +   L + ++ + +   +  +VA  ++  +VI T A + +LG T  + ++  + L
Sbjct: 333 KEDLVLGGLLAVAIVLVFLRTWRTTVVAAMALPTSVIGTFAAMHVLGYTFNVITMLALTL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL +D  I+V E +     +      +   G       +    +  L   V + F   
Sbjct: 393 SIGLLIDDAIVVIENVSRHAEEGAPPAKAAHAGTKEIALAVLAVTLAILAVFVPVAFMEG 452

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRA 509
             G     F +T+ +++ IS   ++++   
Sbjct: 453 IVGRFFSAFGMTVAVAVAISYLVSMTLTPM 482



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 54/148 (36%), Gaps = 6/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+   +A+ I +     W   + A   L   +  T     + G  FN+  + A+   IG 
Sbjct: 337 VLGGLLAVAIVLVFLRTWRTTVVAAMALPTSVIGTFAAMHVLGYTFNVITMLALTLSIGL 396

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++D +VV + +    +                 E     +  ++A     +P+A   G 
Sbjct: 397 LIDDAIVVIENV---SRHAEEGAPPAKAAHAGTKEIALAVLAVTLAILAVFVPVAFMEGI 453

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAA 817
           V     +F + +A  + ++   S+ +  
Sbjct: 454 VGRFFSAFGMTVAVAVAISYLVSMTLTP 481



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 90/264 (34%), Gaps = 10/264 (3%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                  +      L       G D  G + +   A + V+L  V   +E   +  I  Q
Sbjct: 735 FAQFRQGTDSYDIRLKLPPDARGADRLGELTVRSAAGQLVELRNVADLIEEPTLSQIDRQ 794

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
               +   L  L        A   +     K++   +        + +G           
Sbjct: 795 EQLRQITLLADLPRGVSLGAAMQDLSAFAAKELPPAIITDFEGQGKELGKTAGAF----- 849

Query: 670 IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +  +++  + + + +  +F         + +L   +   LG     G   ++ A+  ++ 
Sbjct: 850 VQALLLGIVLVYMILAAQFGSLLDPFTIMLSLPFAVIGALGALLATGQFMSIFALIGMIM 909

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           L+G    + +++ +      +L     S RD + ++    L   + T++A    ++P+A+
Sbjct: 910 LMGLVTKNGILLVEFAN---QLRARGRSARDALLEAGPIRLRPILMTTVAMIAGMVPVAL 966

Query: 789 WGGSVIGSFAIPMAFGIVVAASSS 812
             G       +PMA  I+    +S
Sbjct: 967 ARGDG-AEMRVPMAIAIIGGLVTS 989


>gi|21233217|ref|NP_639134.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|21115059|gb|AAM43035.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 1046

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/540 (12%), Positives = 142/540 (26%), Gaps = 38/540 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPVIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + + F  +R  ++ A  V   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSMVFMIFQSNRDIDSAAQDVQTAINS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      D     A E           ++       
Sbjct: 115 AQSDLPSGLGTPMYQKANPNDDPVIAIALTSD--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +     
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIIAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVAKAAD-------------------FAQLAISTQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LRA   P                S   
Sbjct: 274 WFNGKPAVVMYAFTRAGANIVETVDQVKAQIPELRAYLQPGTTLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQATLMISLAMVVLTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E I     +      +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDDAIVVIENIMRHLDEGMPRLQAALTGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + D +
Sbjct: 454 GMVGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSAHTAPEKPSRFGAWLDRMHDRM 513



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 7/151 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 338 LMISLAMVVLTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
           + V+D +VV + +   M+     +           E     V  + +     +PM     
Sbjct: 398 FVVDDAIVVIENI---MRHLDEGMPRLQAALTGAREIGFTIVSITASLVAVFIPMLFASG 454

Query: 791 --GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             G+    F + +   IVV+   S+ +   +
Sbjct: 455 MVGAFFREFTVTLVAAIVVSMLVSLTLTPAL 485


>gi|34580835|ref|ZP_00142315.1| acriflavin resistance protein D [Rickettsia sibirica 246]
 gi|28262220|gb|EAA25724.1| acriflavin resistance protein D [Rickettsia sibirica 246]
          Length = 990

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 75/614 (12%), Positives = 168/614 (27%), Gaps = 53/614 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----VNG 68
           +I  +G +     F  +  +   P                   + +E          +  
Sbjct: 2   VIVALGAI-----FFTKLQIRGTPDISVPI-------------INVEAHYAGADALYMEQ 43

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    ++    +K             + ITLSF  S   E   + V   +  +      
Sbjct: 44  EITTRIEKALKTVKNLDYITSQSSTGASSITLSFLLSTDIEVALNDVRAKISDITYMFPQ 103

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
           D K   +          +      DQ     +E +  +       +   ES  Q      
Sbjct: 104 DMKTPSVTKLDADSFPSLFISIESDQYRD--LELTKIVEDNLQTPLDKLESVGQSQIYGG 161

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
               +  E D  +L Q   +  ++       N          +           +    E
Sbjct: 162 RKYIMRIEPDSKKLYQHKISLLEIESAIKEQNKDYPAGTIKTKSNNFIVTLAGSLSTPEE 221

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
                                 +I                 I                  
Sbjct: 222 FG--------------------NIILKVQNGGIIKLRDIAKISLTSPDEDIIFRYNGKSS 261

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                  +++ +              ++          +          S      T   
Sbjct: 262 IALGLIKESKANVIDLSHEVTKALERIKESMPKGISMGIAYDAATPVKASIYAVFQTIFE 321

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              LV++V ++ +   K  L+   +I +++I T +++   G ++ + ++  ++L IGL V
Sbjct: 322 ALILVVLVTYLFLASAKITLIPFVTIPVSLISTFSVMYAFGFSINIFTLLAMILAIGLVV 381

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR-- 486
           D  I++ E I   N        +  +        I    IT     + + F  G   +  
Sbjct: 382 DDAIVMLENIFRYNEMGHKPMEAAMLASKEIGFAIIAMTITLAAVFLPVGFIEGFIGKLF 441

Query: 487 -GFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSRFFLIPDCIA 539
             FA T+   +L S F A+++   M   ++        K +   +             + 
Sbjct: 442 IEFAWTLAFCVLFSGFVALTLTPMMSSRMVTKHNTDLPKFLVKFNDILQFIQNKYIYYLK 501

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           + F   + + + I+  F +  I   FT  +    +  G +Q+ +      +L      ++
Sbjct: 502 LTFDNQKKFVIIIASSFIVLIISFKFTQKIFVPQEDDGFLQVSLKGPEGSNLESSTKVVK 561

Query: 600 SLQIGDISFQNFDG 613
             +    ++++  G
Sbjct: 562 EAEKILANYKDILG 575



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 82/245 (33%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I L V     + L  +     +    DI F+        L  ++    + +  +  + 
Sbjct: 223 GNIILKVQNGGIIKLRDIAKISLTSPDEDIIFRYNGKSSIALGLIKESKANVIDLSHEVT 282

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              ++I E +P               +  I      +  + I +++            L 
Sbjct: 283 KALERIKESMPKGISMGIAYDAATPVKASIYAVFQTIFEALILVVLVTYLFLASAKITLI 342

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T      FG   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 343 PFVTIPVSLISTFSVMYAFGFSINIFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGH 399

Query: 756 SFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +    T  A F+ V  +  + G +   FA  +AF ++ +   +
Sbjct: 400 KPMEAAMLASKEIGFAIIAMTITLAAVFLPVGFIEGFIGKLFIEFAWTLAFCVLFSGFVA 459

Query: 813 IFIAA 817
           + +  
Sbjct: 460 LTLTP 464



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 90/271 (33%), Gaps = 11/271 (4%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             + L F       I     I +    N  + L  + +  E + +   S  N        
Sbjct: 726 YDVILQFNQKDRKDISDFSKILIRAKNNNMLPLESIANITEKISVKSYSHYNNSKSVTIS 785

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
             L        A   + ++  K +     +           +         ++  + + I
Sbjct: 786 SDLAPDRKIDDAINEINKIASKLLDPSNTIIEYIGEIKQMREADS----NMLITFVFALI 841

Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + + +  +F+ +   L  +  +   IT  +    L G   N+ +   ++TLIG    + 
Sbjct: 842 FIYLVLAAQFESFTDPLLILLAVPFSITGGVLALWLAGNSLNMYSNIGLITLIGLITKNS 901

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +++ +      +L    +  ++ I +S    L   + T++AA +  LP+    G+     
Sbjct: 902 IMIVEFAN---QLRAKGVKVQEAIIESSKLRLRPILMTTLAAVVGALPLVFADGASAAAR 958

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            S    +  G+ +    +IF+   I      
Sbjct: 959 NSIGFVIVGGLSIGTIFTIFVIPVIYHTFKK 989


>gi|58038824|ref|YP_190788.1| acriflavin resistance protein D [Gluconobacter oxydans 621H]
 gi|58001238|gb|AAW60132.1| Acriflavin resistance protein D [Gluconobacter oxydans 621H]
          Length = 1066

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/529 (12%), Positives = 139/529 (26%), Gaps = 38/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GLL      +       +P+                         
Sbjct: 10  RPVATSLLMFAILLSGLLGYHFLAVSALPQVEYPTIT--------------VSTFYPGAG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D ++  +    +     +              + +TL F      +    +V   +   
Sbjct: 56  PDVMSTSVTAPLETQLGQMAGLDQMTSQSSGGASVVTLRFGLDMSMDVAEQEVQAAINNA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     +        + VL+   I        E    +  +   +I        
Sbjct: 116 TSLLPSDLPAPPIYAKVNPADTPVLT-LGITSKTLPLPEVEDYVNTRLEQKISQISGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S         + +  +L         +       N +     F       S      
Sbjct: 175 VTLSGGNRKAYRIQVNIPKLTSYGIAIDTLRTIISTVNVNSPTGTFDGPKRSTSLRIDGQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   ++    +                                   + +          
Sbjct: 235 IQSVEQLMNQVIA--------------------YQNNGPIRVRDIATVVEGAENAQLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++    +   L+    P                S +  
Sbjct: 275 ANRTPALILNVQRQPGANVIGVVDNVLRVLPQLKLDLPPGIDVTPLTDRTTTIRASVNDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV+ V+F+ +      ++   S+ L++I TLA + LLG +L   S+  + +
Sbjct: 335 EYELALAMLLVVGVIFVFLRNVPATIIPSLSVPLSLIGTLAAMYLLGFSLDNLSLMSLTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I       +  + +   G      TI    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVVIENIARYVEAGEDRYTAALKGAGEIGFTIISLTVSLIAVLIPLLFMKD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
             G     FA+T+ ++I+IS   A+++V  M   ++      S      
Sbjct: 455 VVGRLFHEFAMTLSITIIISAVVALTLVPMMCARLLSDTHAPSTKNTLW 503



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/243 (11%), Positives = 84/243 (34%), Gaps = 10/243 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+A +      VR     ++  + +       +   + L  Q         V++ V + 
Sbjct: 244 QVIAYQNNGPIRVRDIATVVEGAENAQLAAWANRTPALILNVQRQPGANVIGVVDNVLRV 303

Query: 642 ITEIVPLSTIQNTEIVGPKISRELI---RKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
           + ++                +  +          + ++ + ++  I++  +     +   
Sbjct: 304 LPQLKLDLPPGIDVTPLTDRTTTIRASVNDVEYELALAMLLVVGVIFVFLRNVPATIIPS 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ L +  TL    L G   +  ++ ++    G+ V+D +VV + +    +        
Sbjct: 364 LSVPLSLIGTLAAMYLLGFSLDNLSLMSLTIATGFVVDDAIVVIENI---ARYVEAGEDR 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                K   E     +  +++    ++P+       G +   FA+ ++  I+++A  ++ 
Sbjct: 421 YTAALKGAGEIGFTIISLTVSLIAVLIPLLFMKDVVGRLFHEFAMTLSITIIISAVVALT 480

Query: 815 IAA 817
           +  
Sbjct: 481 LVP 483



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 82/200 (41%), Gaps = 8/200 (4%)

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
             + +++   +I      Q          R  +   +  V+ + IA+ I + I ++ Y   
Sbjct: 843  TDAIERVEKQIGLPPEFQTAFQGTAAAFRSSLSNEVWLVMAAVIAVYIVLGILYESYVHP 902

Query: 695  GAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              I + +    I   +G + LFG++ ++  +  ++ LIG    + +++ D   +      
Sbjct: 903  ITILSTLPSAAIGALIGLY-LFGMDLDIMGIIGIVLLIGIVKKNAIMMIDFALE--AERL 959

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
               +  + I ++        + T++AA    LP+ +    G  +     + + FG++++ 
Sbjct: 960  EGHTPLESIKRAAMLRFRPILMTTLAALFGALPLLLGTGVGSELRRPLGVAIVFGLMMSQ 1019

Query: 810  SSSIFIAAPILLFIYDWRAK 829
              ++F    I LF+ +   K
Sbjct: 1020 LLTLFTTPVIYLFMDELGTK 1039


>gi|188993367|ref|YP_001905377.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas campestris pv. campestris str. B100]
 gi|167735127|emb|CAP53339.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas campestris pv. campestris]
          Length = 1046

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/540 (12%), Positives = 142/540 (26%), Gaps = 38/540 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPVIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + + F  +R  ++ A  V   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSMVFMIFQSNRDIDSAAQDVQTAINS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      D     A E           ++       
Sbjct: 115 AQSDLPSGLGTPMYQKANPNDDPVIAIALTSD--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +     
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIIAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVAKAAD-------------------FAQLAISTQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LRA   P                S   
Sbjct: 274 WFNGKPAVVMYAFTRAGANIVETVDQVKAQIPELRAYLQPGTTLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQATLMISLAMVVLTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E I     +      +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDDAIVVIENIMRHLDEGMPRLQAALTGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + D +
Sbjct: 454 GMVGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSAHTAPEKPSRFGAWLDRMHDRM 513



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 7/151 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 338 LMISLAMVVLTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
           + V+D +VV + +   M+     +           E     V  + +     +PM     
Sbjct: 398 FVVDDAIVVIENI---MRHLDEGMPRLQAALTGAREIGFTIVSITASLVAVFIPMLFASG 454

Query: 791 --GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             G+    F + +   IVV+   S+ +   +
Sbjct: 455 MVGAFFREFTVTLVAAIVVSMLVSLTLTPAL 485


>gi|71900069|ref|ZP_00682212.1| Acriflavin resistance protein [Xylella fastidiosa Ann-1]
 gi|71730151|gb|EAO32239.1| Acriflavin resistance protein [Xylella fastidiosa Ann-1]
          Length = 1032

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/584 (11%), Positives = 156/584 (26%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  +GL+  L   +      + P    + R   G D            
Sbjct: 9   KRPIGTSLLAIGVFVLGLICYLQLSVAPLPKFQIPVIFVEAR-QAGAD------------ 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        S  +  + + L F  +R  ++ A  V   +  
Sbjct: 56  -ASTMASTVTAPLERYLGQIPGIKRMRSSSSESNSNVFLLFQSNRNIDSAAQDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L               +  I+      D     A              +   +   
Sbjct: 115 AQADLPSGLLPPSYKKANPNDDPIIALALTSDTQSMDA--LYNVADSLLAQHLRQIQGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +  + D   L  L  T  ++       N +    +              
Sbjct: 173 SVDIVGASTPAVRVDVDMHALNALGLTMDQLQNAVRAANVTSPTGLLSNDTRTTEILLNS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                       +   +   R         +           
Sbjct: 233 TISKAAD-------------------FAHLVIATQPNGRIVRLSDIAKVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        LR       +      +      S   
Sbjct: 274 WFNHKRAVVMYVFLRTGANVVETVDRVKAELPALRTYLPSGTVITPYFDHTPTIRASLYE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      ++A  ++ L++     ++  L  TL   ++  +V
Sbjct: 334 IQTTLIISLAMVMLTMALFLRRLAPTIIAAATVPLSLAGGAIVMYALDFTLNNVTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG  VD  I++ E I        S   +   G     STI    ++ ++      F  
Sbjct: 394 IAIGFVVDDAIVMIENISRHLNTGMSPLEAALTGAREIGSTIVSITVSLVVVFAPFLFDH 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F IT+  +I+ISM  ++++  A+    +    +        +    +   I
Sbjct: 454 GMIGTLFREFGITLVSAIIISMLVSLTLTPALCSRFLSAHAVPEKSNGIGAWLERMYLRI 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +  A  + +  ++L ++  + L+    +  G   KG     
Sbjct: 514 LRLYTVALDFSLRHALLLALTPLLLIVLTVMLAGAISKGTFPSQ 557



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 58/153 (37%), Gaps = 11/153 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +IIS   +++ + +  +     + A  T+ L +              N   + A++  IG
Sbjct: 338 LIISLAMVMLTMALFLRRLAPTIIAAATVPLSLAGGAIVMYALDFTLNNVTLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA-FISVLPMAVWG 790
           + V+D +V+ + +    +   T +S  +       E     V  S+    + V    ++ 
Sbjct: 398 FVVDDAIVMIENI---SRHLNTGMSPLEAALTGAREIGSTIV--SITVSLVVVFAPFLFD 452

Query: 791 GSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
             +I      F I +   I+++   S+ +   +
Sbjct: 453 HGMIGTLFREFGITLVSAIIISMLVSLTLTPAL 485



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 78/249 (31%), Gaps = 11/249 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               + V ++ +   +  L    I   N     +    L        A+  +   +K    
Sbjct: 778  RNGKMVPITAIAHQVPGLNPPQIKHDNQYTTMDLSYNLSPGVSIGEAEAIIDATIKGLRL 837

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   I             L+   ++ V I          +       +  ++TL   
Sbjct: 838  PGDIRVAIAEDNDFTNDQMNILLLATLIAVYIVLG------MLYENLIHPITILSTLPAA 891

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L    L   E +  ++ A++ LIG    + +++ D     +      +     + +
Sbjct: 892  GMGALLALYLSHTELSAISMIALILLIGIVKKNAIMMID--FALVAQRERGLEPHAAVRE 949

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +        + TSM A ++ +P+A+    G  +     I M  G++++ S ++     + 
Sbjct: 950  ASIVRFRPIMMTSMVAILAAMPLAISVGEGAELRRPLGIAMIGGLLISQSLTLLSTPALY 1009

Query: 821  LFIYDWRAK 829
            +       +
Sbjct: 1010 VIFSCLSQR 1018


>gi|292490260|ref|YP_003525699.1| acriflavin resistance protein [Nitrosococcus halophilus Nc4]
 gi|291578855|gb|ADE13312.1| acriflavin resistance protein [Nitrosococcus halophilus Nc4]
          Length = 1034

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/512 (13%), Positives = 149/512 (29%), Gaps = 39/512 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GL       L    + ++P            D       +    
Sbjct: 9   RRPVLASVVSLLILLVGL-----RALTLLEVRQYPETR---------DTVVTVTTLYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+     +  +  K     V +  Q ++ I      +        ++   +  
Sbjct: 55  SSELVKGFITTPLQQAIAEAKGIDYMVATSTQGRSVIEAYMELNYDPNAAVAEIQAKVAS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +  ++ +TT    +++      + ++    + +  ++R    ++       
Sbjct: 115 QRNVLPEESEDPVIDSTTGDPTALMYMAFYSEGMLPS--QITDYMLRVVRPKLQAVPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP R+  L  T   +    +  N           ++        
Sbjct: 173 KAELIGNKTFAMRIWLDPRRMAALGVTADDVKEVLLDNNYLAGVGQTKGAYVSVDLSATT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +                     +++   E                         
Sbjct: 233 DISREEDF--------------------LNLVVYEADGALVRLRDIAEPKLGAEDYDSSN 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     E    L   +R          +          +   
Sbjct: 273 WYNGKSAIFIGIEQAPGANPLDVAERIHDLVPEMRRQLPSGLDGYIVYDASAYIDDAIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +VL V+F+ +   +  LV    + L++I    L+ LLG +L L ++  +V
Sbjct: 333 VFRTLAEAVLIVLAVIFLFLGSLRAALVPAIVVPLSLIGGAFLMLLLGFSLNLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +S F +   G       I     T +     + F G
Sbjct: 393 LAIGLVVDDAIIVVENIHRHLENGESRFQAAIQGARELGLPIIAMTTTLVAVYAPIGFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAM 510
              G     FA T+  ++L+S   A+++   +
Sbjct: 453 GLVGTLFTEFAFTLAGAVLVSGVVALTLSPML 484



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 86/235 (36%), Gaps = 10/235 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            + E         Q        +  +  +          LE   ++I  +           
Sbjct: 781  SFEDTVEPSKRIQFQQLNSVTVQGIMAEGVTLGEALTYLEEQAQEIFPLGFSWDYAGESR 840

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               +    L    ++    S + + + +  +F+ W   +  + ++ + I   L F  L  
Sbjct: 841  QYTQQGSAL----VITFFFSLLVIYLVLAAQFESWRDPVIIMMSVPMSIAGALVFLTLGF 896

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               N+     ++TLIG    + +++ +    N       +S R+ ++K+ +  L   + T
Sbjct: 897  ATVNIYTQVGLITLIGLIAKNGILIVE--FANQLQIQEGLSKREAVEKAASIRLRPILMT 954

Query: 776  SMAAFISVLPM-AVWGGSVIGSF--AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +++  ++++P+    G   +  F   + +A G+ +    ++F+   + L +   R
Sbjct: 955  TVSMIVAMVPLLMASGPGAVSRFHIGLVIASGLGIGTVFTLFVVPAVYLLLARTR 1009



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/194 (13%), Positives = 68/194 (35%), Gaps = 9/194 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                ++  +++++   +    + +          E+ R     V+I    + +++    
Sbjct: 297 ERIHDLVPEMRRQLPSGLDGYIVYDASAYIDDAIDEVFRTLAEAVLIVLAVIFLFLG--- 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               AL     + L +        L G   NL  + A++  IG  V+D ++V + +    
Sbjct: 354 SLRAALVPAIVVPLSLIGGAFLMLLLGFSLNLLTLLALVLAIGLVVDDAIIVVENIH--- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      S      +   E     +  +        P+   G   G++   FA  +A  +
Sbjct: 411 RHLENGESRFQAAIQGARELGLPIIAMTTTLVAVYAPIGFMGGLVGTLFTEFAFTLAGAV 470

Query: 806 VVAASSSIFIAAPI 819
           +V+   ++ ++  +
Sbjct: 471 LVSGVVALTLSPML 484


>gi|23501966|ref|NP_698093.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella suis 1330]
 gi|23347914|gb|AAN30008.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella suis 1330]
          Length = 1029

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 AFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFIG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFIGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 88/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S  D I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRCDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|77462776|ref|YP_352280.1| AcrB/AcrD/AcrF multidrug efflux pump [Rhodobacter sphaeroides
           2.4.1]
 gi|77387194|gb|ABA78379.1| AcrB/AcrD/AcrF multidrug efflux pump [Rhodobacter sphaeroides
           2.4.1]
          Length = 1048

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/516 (12%), Positives = 147/516 (28%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L ++I   GL       L  + +   P                      +  
Sbjct: 22  RRPILAFVLNALILIAGLAA-----LYGADVRELPDVDSPVIT---------VTTTFDGA 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   S +        S R  ++++T+ F D    +  A  +   +  
Sbjct: 68  SSETIDQEVTDEIEGAASRVAGVKSISSSSRFGRSQVTVEFNDDTNLDVAASDMRDSISR 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D  +  +V       +++            A E +  +  Q   ++  +    
Sbjct: 128 IRNNLPDDADEPRIVKADANSEAVMRVAVTSA--RRSAQELTQIVEDQIESRLLAAPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D   L     T A +                             
Sbjct: 186 DLQIYGDRTPIFRVDVDQMLLASRGLTLADLRTALGNVAYDAPAGSLTSDRQSLVVRTTA 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V        + +                        A          +           
Sbjct: 246 TVTTPAAFEALEI------------------------APDVRLGDVATVELGPEPGASYL 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +     +    + A L+A         V   +     G+   
Sbjct: 282 RANGENGVGLGIIRQAQSNTLEISKAVREIVAGLQADLPQDVRIFVTSDDATFINGAIHE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   +V+ ++++ +   +  L+   +I + ++ TLA + + G ++ + ++  +V
Sbjct: 342 VEIALGLSVLIVVAIIYLFLRDMRATLIPTLAIPVALVGTLAAIWIAGFSINILTLLALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+V E I     +      +  +G  + +  +  +  T     + L F  
Sbjct: 402 LATGMVVDDAIVVLENIVRWRAQGIGPRAAAVLGTQQVFFAVIATTTTLAAVFIPLSFLP 461

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F  T+ +S+L+S  TA+S+   +    
Sbjct: 462 GQTGGLFREFGFTLAISVLLSSVTALSLCPVLASRF 497



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 79/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  V +     + G    +        L  ++    +++  ++ +  +   +
Sbjct: 256 LEIAPDVRLGDVATVELGPEPGASYLRANGENGVGLGIIRQAQSNTLEISKAVREIVAGL 315

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTLI 701
              +P                  I +  + + +S  I + I           L     + 
Sbjct: 316 QADLPQDVRIFVTSDDATFINGAIHEVEIALGLSVLIVVAIIYLFLRDMRATLIPTLAIP 375

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  TL    + G   N+  + A++   G  V+D +VV + +   ++     I  R   
Sbjct: 376 VALVGTLAAIWIAGFSINILTLLALVLATGMVVDDAIVVLENI---VRWRAQGIGPRAAA 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
                +     + T+       +P++   G        F   +A  +++++ +++ +   
Sbjct: 433 VLGTQQVFFAVIATTTTLAAVFIPLSFLPGQTGGLFREFGFTLAISVLLSSVTALSLCPV 492

Query: 819 I 819
           +
Sbjct: 493 L 493



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 666  IRKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTA 722
               G+      + + +L+ +  +F+ + +   +   +  +      FAL   G   N+ +
Sbjct: 855  TSSGLTATFGFAIVIVLLVLAAQFESFVSAFIVMATV-PLGLACAIFALVATGGSLNVYS 913

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ L+G    + +++ +      +L    +  R  I+ +    L   + T +A  + 
Sbjct: 914  QIGLVLLVGIMAKNGILIVEFAN---QLRDEGLPVRRAIEDACAIRLRPVMMTMIATVLG 970

Query: 783  VLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             LP+    G+   +       +  G+ +A  +++++     L +       A
Sbjct: 971  GLPLVFAAGAGAEAREVLGWIIVGGLGLATVATLYLTPVAYLLLAGLSRPKA 1022


>gi|117925812|ref|YP_866429.1| acriflavin resistance protein [Magnetococcus sp. MC-1]
 gi|117609568|gb|ABK45023.1| acriflavin resistance protein [Magnetococcus sp. MC-1]
          Length = 1026

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 86/648 (13%), Positives = 181/648 (27%), Gaps = 43/648 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  M+  +GL+      L +  +D  PS                     E   
Sbjct: 10  RPVFTSMVTLMVVILGLVS-----LSRLQIDLLPSIELPTL---------SVRTQYEGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +E+ + +           +  + + +SFA     +  A  V   L+  
Sbjct: 56  PEVMERLVTQIVEEIVATVPGVVEMTSQSSEGNSTVKVSFAWGTDIDTAALDVLATLEDE 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L  D  +  +         +V+   + D       +   E IR R           Q
Sbjct: 116 INELPEDITRPRVSKFDVDSFPVVILGISSDLDPVPFTQLIEEQIRYR---FARIAGVAQ 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+  E DP RL  L    A +       N  +            +      
Sbjct: 173 VDVWGGYNRQVRIELDPDRLNALGIPLADVLTAVRNANLDRPAGTLEEGQFEITLRAPAE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D  EI    +                                   +      +     
Sbjct: 233 FVDLDEIRQTVVVL--------------------RDGVPVTLGQLAAVHDRYEKLTRMVR 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      +     +A+ +     +        +      I +             S +  
Sbjct: 273 VDDRPGIRVAIRKQAEANTVEVAKRVLAEIEAVNQAYPRIHVVP-VINQGNFIERSIANV 331

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +     GL ++VL   +   +  +V   +I +++I T  LL   G TL L ++ G+ L
Sbjct: 332 ARSVLYGGGLAVLVLLFFLGSVRSTVVISLAIPISIIATFMLLYFGGFTLNLMTLGGLAL 391

Query: 423 GIGLAVDSNILVNERI-REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           G+G+ VDS+++V E I R  +   +S+  +  MG     S I  S IT L+  + L F  
Sbjct: 392 GVGMMVDSSVVVLENIVRRRHEARESLHTASLMGAQEVTSAIIASTITTLVIFLPLVFVR 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G +    +  A  +  S++ S+  ++S+V  ++  + R  +    +          +   
Sbjct: 452 GVSGILFQELAYVIIFSLICSLLVSLSLVPMLISKLGRGGEGSVDLPRWADRWQSAMQQS 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
            A    R         +         +               +  V     + +      
Sbjct: 512 YANLLQRVLEHRWKTVLAAVTLLAGSMLLLPYIGTEYLPPSDEGEVRITGEMAVGTRLEL 571

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           L+       +       +     +            +   +       
Sbjct: 572 LDQQAQRMEAIVRQAVPEIQSSVVNVGRWRGKTNAEIRLALAPVAERS 619



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/140 (12%), Positives = 44/140 (31%), Gaps = 5/140 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +     + + I  T       G   NL  +  +   +G  V+  VVV + +    
Sbjct: 352 SVRSTVVISLAIPISIIATFMLLYFGGFTLNLMTLGGLALGVGMMVDSSVVVLENI--VR 409

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           + +    S          E     + +++   +  LP+    G         A  + F +
Sbjct: 410 RRHEARESLHTASLMGAQEVTSAIIASTITTLVIFLPLVFVRGVSGILFQELAYVIIFSL 469

Query: 806 VVAASSSIFIAAPILLFIYD 825
           + +   S+ +   ++  +  
Sbjct: 470 ICSLLVSLSLVPMLISKLGR 489



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 81/214 (37%), Gaps = 7/214 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                +              V   V++++  I   +          +   +  R+ I+ ++
Sbjct: 799  DQQRLVTVSANVAGRDLGSVAAEVQERLMLIPRPAGYDLLLSGHYEEQGKAFRELIISML 858

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ + + + +  +++     +  + ++ +     L    L    FNL      + L+G  
Sbjct: 859  LALVLVYMVLASQYESLRDPIIVMLSVPMAAVGVLLMMFLTHTTFNLQTFIGCIMLVGIV 918

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +++ D   +  +L    +S +  + ++    L   + T++   +++LP+A+    G
Sbjct: 919  VNNAILLVD---QAGRLRQAGMSGKQAVTEAGRRRLRPILMTTLTTVLALLPLALGIGEG 975

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
              +    A  +  G+  +   ++ I   +    +
Sbjct: 976  ADMQAPLARAVISGLAGSMLITLVIIPVVYTLFH 1009


>gi|225627563|ref|ZP_03785600.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella ceti str. Cudo]
 gi|260168796|ref|ZP_05755607.1| acriflavin resistance protein [Brucella sp. F5/99]
 gi|261758278|ref|ZP_06001987.1| acriflavin resistance protein [Brucella sp. F5/99]
 gi|225617568|gb|EEH14613.1| AcrB/AcrD/AcrF multidrug efflux protein [Brucella ceti str. Cudo]
 gi|261738262|gb|EEY26258.1| acriflavin resistance protein [Brucella sp. F5/99]
          Length = 1029

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGVDPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|83308759|emb|CAJ01669.1| fragment, putative acrb/acrd/acrf family protein [Methylocapsa
           acidiphila]
          Length = 985

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/529 (12%), Positives = 146/529 (27%), Gaps = 28/529 (5%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +   +    +   + L        +       +TL F  SR  +  A  V   +      
Sbjct: 1   MAASVAQPLERQFASLPGVNQITSTSVLGTTVVTLQFDLSRSIDGAAGDVQGAINAALGY 60

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
           L  +                +L    +        E           ++ +     Q   
Sbjct: 61  LPKNLPTPPTYRKVNPADQPILI-LGLTSETMPLTELDQYADLNIAQRVSMLIGVGQVGI 119

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
             +         +P  L        +++        +               G+   +  
Sbjct: 120 FGQQKFAPTIMVNPLALAARGVGLDELANSVASNTANLPVGTLQGPRQSYQIGSNGQLFS 179

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
             +++   +                                   +       L    +  
Sbjct: 180 PRDVANSVIV--------------------YRNGAPVRVGDVAKVVIDAESPLQAGWVGD 219

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
                     +   +    +     L   L+A   P     V      +   S +  K T
Sbjct: 220 RRGEMIGIWRQPGANTIELVNRIKALLPTLQASIPPSIKLSVVSDRSISIRDSFADVKLT 279

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
            A    LV+IV+F  +      L+   ++ L+++ T A++ LLG +L   S+  + L +G
Sbjct: 280 LAGTIVLVVIVIFAFLRNVWATLIPGATVPLSLLGTFAVMYLLGYSLDNLSLMALTLAVG 339

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---G 482
           L VD  I++ E I     +      +   G      TI    ++ +   + L F G   G
Sbjct: 340 LVVDDAIVMLENIYRHMEEGGGRMKAALDGSKEIGFTIISITVSLIAVFIPLLFMGGVIG 399

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----KKMKSIDINPLSRFFLIPDCI 538
              R F +T+  +I++S   A+++       +++     +  K  + +  +    +    
Sbjct: 400 RLFREFGVTVTAAIVLSALIALTLSPMTASLVLKNPKDARHGKIYEWSERAFAASVAGYE 459

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +     R     + +  ++ ++          G   +    L     +
Sbjct: 460 RLLKFSLRHRRPVMLLNLALIALSGWLFVTTPKGFFPQEDTGLIFAFTQ 508



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 87/266 (32%), Gaps = 8/266 (3%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           +         +      PV +  V   +   +    +    D     +   +    +++ 
Sbjct: 178 FSPRDVANSVIVYRNGAPVRVGDVAKVVIDAESPLQAGWVGDRRGEMIGIWRQPGANTIE 237

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFK 689
               ++ +   +   +P S   +         R+      + +  + + ++I I      
Sbjct: 238 LVNRIKALLPTLQASIPPSIKLSVVSDRSISIRDSFADVKLTLAGTIVLVVIVIFAFLRN 297

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            +  L    T+ L +  T     L G   +  ++ A+   +G  V+D +V+ + +    +
Sbjct: 298 VWATLIPGATVPLSLLGTFAVMYLLGYSLDNLSLMALTLAVGLVVDDAIVMLENI---YR 354

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                            E     +  +++     +P+   GG +      F + +   IV
Sbjct: 355 HMEEGGGRMKAALDGSKEIGFTIISITVSLIAVFIPLLFMGGVIGRLFREFGVTVTAAIV 414

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           ++A  ++   +P+   +     K+AR
Sbjct: 415 LSALIAL-TLSPMTASLVLKNPKDAR 439



 Score = 42.4 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 84/243 (34%), Gaps = 8/243 (3%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A + + +S     +       ++ Q           L+       A   V +  K+    
Sbjct: 718 AGKMISISQFAKLMPRPGTVSVNHQGQFPSVTLSFNLKPGVSLGQAVEGVQQAEKEIGLP 777

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
               ++ Q T                  +    + + +   +   +      + +L    
Sbjct: 778 PTLQTSFQGTAQEFQNSLSTQPLLIATALFAVYVVLGV---LYESFIHPFTILLSLPSAA 834

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              L F  LFG +  + A+  ++ LIG    + +++ D   + +++     S  + I ++
Sbjct: 835 VGALFFLRLFGFDLTMMAIIGLIMLIGIVKKNAIMMIDFALERLRVEQK--SAEEAIYEA 892

Query: 765 INETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                   + T+MAA +  LP+A+    G  +     + +  G++V+   ++F      L
Sbjct: 893 AVLRFRPIMMTTMAAILGALPIAIGIGAGADLRQPLGVAVVGGLLVSQVLTLFTTPVTYL 952

Query: 822 FIY 824
           ++ 
Sbjct: 953 YME 955


>gi|315655414|ref|ZP_07908314.1| protein-export membrane protein SecD [Mobiluncus curtisii ATCC
           51333]
 gi|315490354|gb|EFU79979.1| protein-export membrane protein SecD [Mobiluncus curtisii ATCC
           51333]
          Length = 721

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 116/719 (16%), Positives = 231/719 (32%), Gaps = 98/719 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL--- 58
           +N     +++  +  + L   L      S     P         L +DL GG+ L+L   
Sbjct: 7   KNKALRTLIFFAVIVVALAGTLVGSTIFSNGSYAP--------KLAIDLEGGTQLILTPK 58

Query: 59  --EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADS---------- 105
             E       +  ++   + +R  +   G+    + R  Q  I++    +          
Sbjct: 59  NTEAKAKAISDADIEQAIEVIRQRIDASGVAEAEIARNGQENISVGIPGNPSEETLALIQ 118

Query: 106 ---------------------RFKENIADKVTLFLQGVNSKLNV-----DPKKNLLVTTT 139
                                   + +  ++T        +          +    V   
Sbjct: 119 QSAVMRFRTVLLSAPGNATNNEDPQALLGQLTGAAAPAGQRQPAAGETGGQQTQTTVGEG 178

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              ++I  S           +  S +            +              +P ++  
Sbjct: 179 NNTVTIPPSAPTEKGQTQSLVLNSTDPSATPEPTSNPGKPAPTPAAKQHPSAAIPFDELM 238

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKK----------------------GFMFGVRFLRDSD 237
            +  +   T A  S       +                                     +
Sbjct: 239 KQAEKYPDTPAGESKVINDRKHITVRDMFIFNHLDCTDPASLKGGSLDDPKKNLVACSKE 298

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTH-----KPVVDISFDEMGARRFFEV------- 285
           G +  +     +SG  L  A++            +  V +  D  GA++F  V       
Sbjct: 299 GYEKYILGPEVLSGTDLVSASSGMGTNQQGNATGQWEVALKLDADGAKKFDAVAKVLYPN 358

Query: 286 -----TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
                 R+      A+VLD  V++AP +N     G A ISG+ T E++  LA  L+ GSL
Sbjct: 359 QNQGSNRNPDNNRFAIVLDSLVVSAPGVNAPAFGGSASISGSLTRESSATLANQLQFGSL 418

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P+      ++++ A LG + +  G  A + GL+L+VL+++  Y     +A  S+ L   +
Sbjct: 419 PLNFEQQSKQSISATLGGEHLKVGFYAAIVGLILVVLYLLQQYHALAGLATASLLLAGGI 478

Query: 401 TLALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
               +++L  ++    +L  + G+++ +G+ +DS I+  ERIR+E R  + +  +++ G+
Sbjct: 479 VYLAVAILSWSMGYRLSLAGVVGLIVAVGVTMDSFIIYFERIRDEVRDGKPLATAVETGW 538

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           +RA  TI  S+I  ++A VVL+    G V+GFA T+GL+ L+ +         MM  +I+
Sbjct: 539 NRAKRTIVVSDIVNIVAAVVLYVLAVGGVQGFAFTLGLTTLVDLGIIFLFTHPMMSLLIK 598

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
            +               +       +MR+                           +  +
Sbjct: 599 TRYFGEGRKFSGLDPLHLGASSDRIYMRSTATATSS-----RKKKSAQKVASPTISLARQ 653

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               L        D S  ++                                   ++  
Sbjct: 654 KAGLLQADEEDTADTSATQNANLESDTPATEPAAETSSTESQSETAKSDESGDTASKDE 712



 Score =  104 bits (259), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 70/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD---I 704
               Q+ + +   +  E ++ G    I+  I +++Y+  ++     L A  +L+L    +
Sbjct: 421 NFEQQSKQSISATLGGEHLKVGFYAAIVGLILVVLYLLQQYHALAGL-ATASLLLAGGIV 479

Query: 705 TKTLGFFAL-FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +   +   G   +L  V  ++  +G +++  ++ ++R+R  ++           ++ 
Sbjct: 480 YLAVAILSWSMGYRLSLAGVVGLIVAVGVTMDSFIIYFERIRDEVRD---GKPLATAVET 536

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             N      V + +   ++ + + V     +  FA  +    +V          P++  +
Sbjct: 537 GWNRAKRTIVVSDIVNIVAAVVLYVLAVGGVQGFAFTLGLTTLVDLGIIFLFTHPMMSLL 596

Query: 824 YDWR 827
              R
Sbjct: 597 IKTR 600


>gi|83717147|ref|YP_439483.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis E264]
 gi|257142608|ref|ZP_05590870.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis E264]
 gi|83650972|gb|ABC35036.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis E264]
          Length = 1036

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 72/608 (11%), Positives = 180/608 (29%), Gaps = 42/608 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL   +        + ++P A+    IS+  D  G S       
Sbjct: 22  RRPVLSLVFSLLILLVGLRALM-----SLPVRQYP-ALESATISVATDYPGASQ------ 69

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     +  +          +  Q ++ +      +   +    +V   +Q 
Sbjct: 70  --DLMQGFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQ 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     + +  ++R     +       
Sbjct: 128 VKYKLPADAYDSVITKLTDAPTAVMYLGFASDTL--SIPQITDYVVRVAQPLVTTVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D +RL         ++      N                     
Sbjct: 186 SAEILGGQNLAMRVWLDATRLAAHGLAAGDVAAAIRANNVQAAPGQVKGSLTIADISANT 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D    +                   + +     G           +           
Sbjct: 246 DLTDVGAFN------------------EMVVKSAPNGGGLVRLKDVATVEIGGENYNSSA 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +   G +   +                      S + 
Sbjct: 288 LMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVQIANMFDGARFVNASIAE 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L+++ + AL+   G +L L ++  +V
Sbjct: 348 VRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMV 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +  +G     S +     T +     +   G
Sbjct: 408 LAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++L+S   A+++   +   ++  +       K+I+         
Sbjct: 468 GLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHA 527

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + + +   +            + +G I + V A +  +L  
Sbjct: 528 YRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDY 587

Query: 594 VRSNLESL 601
           +      +
Sbjct: 588 MERYAPDI 595



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 9/204 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            VL  +++     V ++ + +          E+       + I  + + +++     +  
Sbjct: 316 AVLPAMERNKPASVQIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLG---SFRA 372

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 373 VIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIE 429

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                         E     +           P+ + G   GS+   FA  +A  ++V+ 
Sbjct: 430 QGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSG 489

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ ++  +   +   R    R+
Sbjct: 490 IVALTLSPMLGSLLLTSRMSEGRV 513



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L I   L    L     N+     ++TLIG 
Sbjct: 865  GFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N       +  R+ I+++    L   + T+ A    ++P+    G 
Sbjct: 925  ISKHGILMVS--FANDLQRHEGLGRREAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 982

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V    ++F+   +  F+  
Sbjct: 983  GAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAK 1018


>gi|182412945|ref|YP_001818011.1| acriflavin resistance protein [Opitutus terrae PB90-1]
 gi|177840159|gb|ACB74411.1| acriflavin resistance protein [Opitutus terrae PB90-1]
          Length = 1041

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/594 (10%), Positives = 157/594 (26%), Gaps = 38/594 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +   G++           +   P                         
Sbjct: 9   QRPVATTLLMVALLLSGIMA-----YRLLPVAALPQVDFPTIQ---------VFTFYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +     +    +     +        S     + +TL F+          +V   +  
Sbjct: 55  SPEVTASAITAPLERRFGQIPGLSQMSSSSSGGASVVTLQFSLEISMGVAEQEVQAAIAA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            ++ L  D     +        + +L+   +        +    +  +   ++       
Sbjct: 115 ADNLLPNDLPAPPVYRKVNPADTPILT-LAVTSATLPLPQVHDLVDTRIAQKLAQIPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + +P+ L       A +       + ++    F             
Sbjct: 174 MVSLAGGQRPAVRVQVNPAELAARGLNLASIRSAIAAASVNQPKGSFDGPIRSILMDAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                      D+                 I           
Sbjct: 234 QLRSPAE--------------------YRDLIIAWRDGAPLRLGEVARITNAAEDRRLAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++    L   L A         V      +   S   
Sbjct: 274 WADTLPAVLVNVQRQPGANVIEVVDRVRALLPQLSATLPAAAELTVLTDRTQSIRASVRS 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +       GLV++V F+ +      ++   ++ L++I T  ++ L G +L + ++  + 
Sbjct: 334 VQHELVFSVGLVVLVTFLFLRNVSATIIPSIAVPLSLIGTFGVMYLAGFSLNILTLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I     +  S   +   G S+   T+    ++ +   + L F G
Sbjct: 394 IATGFVVDDAIVMMENIARYREQGFSAMEAALKGASQIGFTLVSLTLSLIAVLIPLLFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FAIT+ +SILIS+  ++++   M   ++  +         L    +     
Sbjct: 454 DVVGRLFHEFAITLAVSILISLVVSLTLTPMMCGRMLHAQHAHDAAKPDLLERVIAKYGE 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            + ++ A         + ++     L+          +    L  +   P  +S
Sbjct: 514 WLDWVLAHQRFALGVTVGTLALTAALYVIVPKGFFPVQDNAALQAVTEAPQSIS 567



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 56/143 (39%), Gaps = 6/143 (4%)

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + L +  T G   L G   N+  + A+    G+ V+D 
Sbjct: 344 LVVLVTFLFLRNVSATIIPSIAVPLSLIGTFGVMYLAGFSLNILTLMALTIATGFVVDDA 403

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVI 794
           +V+ + +    +      S  +   K  ++     V  +++    ++P+   G   G + 
Sbjct: 404 IVMMENI---ARYREQGFSAMEAALKGASQIGFTLVSLTLSLIAVLIPLLFMGDVVGRLF 460

Query: 795 GSFAIPMAFGIVVAASSSIFIAA 817
             FAI +A  I+++   S+ +  
Sbjct: 461 HEFAITLAVSILISLVVSLTLTP 483



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 83/219 (37%), Gaps = 8/219 (3%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +  G + +    +  +++   ++   + I+          R  +   +  ++ + + 
Sbjct: 803  TISFNLGGNASLGEAVAAIERAARDLQLPAAIELRFQGAAHAFRSSLSSTLWLILAAVVT 862

Query: 680  MLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            M I + + ++     +  ++TL       L    + G   ++  V  ++ LIG    + +
Sbjct: 863  MYIVLGVLYESSIHPITILSTLPSATVGALLALWITGRPLDMIVVIGIILLIGLVKKNGI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +        +S    I ++        + T++AA    LP+ +    G  +  
Sbjct: 923  MMIDFALE--AERKEKLSPVAAIRQAALLRFRPILMTTLAALFGALPLMLSTGSGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYD--WRAKNAR 832
               + M  G++V+   ++F    + LF      R +N R
Sbjct: 981  PLGLVMVGGLLVSQVLTLFTTPVVYLFFDRLGRRMRNGR 1019


>gi|126174735|ref|YP_001050884.1| acriflavin resistance protein [Shewanella baltica OS155]
 gi|125997940|gb|ABN62015.1| acriflavin resistance protein [Shewanella baltica OS155]
          Length = 1085

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 67/561 (11%), Positives = 151/561 (26%), Gaps = 39/561 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++        +  +   P                    + +  
Sbjct: 9   KRPVTVWMFMLAVILFGMV-----GFSRLAVKLLPDLSYPTLT---------IRTMYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 55  APVEVEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGISEST 180
           +   L +D KK LL+        I+    ++         +       +   ++      
Sbjct: 115 I--ALPLDVKKPLLLRFNPNLDPIMRLALSVPNASEADLKQMRTYAEEELKRRLEALSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++  + +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQEVHIQLNQEKLSQLNLNADDIKRRINEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I G             +   +  +                 I        D 
Sbjct: 213 INLSAGKVIQGDREYLVRTLNQFNSLDELGQVIVYRDEQTLVRLFEVATITDAYKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +        +           V          + S
Sbjct: 273 TRIGSQESIELAIYKEGDANTVAVAKKLRDELVKINQ-DPKQNKLEVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  + + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALMGSLLSMLVIYLFLRNIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IGL VD+ I+V E I     +  +   +   G       IF S +T L   V L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRCRSEGMNKLDAAVTGTKEVAGAIFASTLTTLAVFVPLVFV 451

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G A   F+    L++  ++  ++ +    +  +   +  K++     +     P     
Sbjct: 452 DGIAGALFS-DQALTVTFALLASLLVALTSIPMLASREGFKTLPALIKTTPKDKPTTKMG 510

Query: 541 QFMRARFWGVGISILFSICSI 561
           +F           IL     +
Sbjct: 511 KFKHYSATVFSFPILLIFSYL 531



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/220 (10%), Positives = 65/220 (29%), Gaps = 6/220 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++      L  +                        + L            V + ++ +
Sbjct: 244 VIVYRDEQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKKLRDE 303

Query: 642 ITEIVPLSTIQNTEIVGPK---ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           + +I         E++  +   I   +       ++ S ++ML+           L    
Sbjct: 304 LVKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSLLSMLVIYLFLRNIIPTLIISI 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  ++  
Sbjct: 364 SIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRCRSEGMNKL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           D       E  G    +++      +P+    G     F+
Sbjct: 421 DAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDGIAGALFS 460



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 90/250 (36%), Gaps = 12/250 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +N+P+ LS V      L    I+  +          L Y             + ++
Sbjct: 826  INPNSNQPITLSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVAQAQQILSQQ 885

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             +   V        E +         +   + +I++   + + +  +F+     L  +  
Sbjct: 886  VLPASVQARFGGQNEEMEHS-----FQSLKIALILAIFLVYLVMASQFESLLHPLLILFA 940

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + + +  ++    +     ++     ++ L G  VN+ +V+ DR+    +L +  +   D
Sbjct: 941  VPMALAGSVLGLYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRIN---QLRSEGVEKLD 997

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I  +    L   + T++   + +LPMA+    G  V    AI + FG+ ++   ++ + 
Sbjct: 998  AIRAAAKSRLRPIMMTTLTTTLGLLPMALGLGDGSEVRAPMAITVIFGLSLSTLLTLIVL 1057

Query: 817  APILLFIYDW 826
              +       
Sbjct: 1058 PVLYALFDRK 1067


>gi|319403724|emb|CBI77309.1| AcrB/AcrD/AcrF multidrug efflux protein [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 1044

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/516 (12%), Positives = 145/516 (28%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  ++ +MI   GL  A  N      +   P                    +    
Sbjct: 25  RRPVFTFVVNAMIIIAGL-SAWMNV----DVRELPDVDIPVTT---------IMTIFSSA 70

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  + +        +    ++++ ++F         A  +   +  
Sbjct: 71  SAETIDREITKVIEDAVARVSGVKTISSTSSFGRSRVQINFNVGVDLNVAASDIRDAISR 130

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    L++       S++        +     + +  +  Q ID +   +   
Sbjct: 131 ITYSLPKDADSPLIIKADSNAASMMYLVVTSPTMNID--DLTTIVNDQIIDTLSAVDGVG 188

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D  +L     T   +S                            
Sbjct: 189 DVQVDSARTKIFQIDVDQVKLASYGLTVGDISRVLADMTTDAPVGSLRNSRQTLIVRATA 248

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +        + L                                   +     V     
Sbjct: 249 RLTTPEAFEQVILKPH------------------------VKLGDVARVTLSPDVETVIL 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            KAQ +     +    +   L+    P     +   +      +   
Sbjct: 285 RVNGKTGIGIGIVRKAQSNTLNISKGVRTVLEQLKGVLPPSVHMSILSDDAIFIQSALHE 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI    V++V+F+ +   +  L+   SI + +I T+A + L G +L + +  G+V
Sbjct: 345 VEVALAIAILSVILVIFLFLRDIRATLIPILSIPVALIGTIAAIYLAGFSLNILTFLGLV 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I            +  +G    +  +  + +T +   V + F  
Sbjct: 405 LATGLVVDDAIVVLENIVRRRNMGLGSRSAAVVGTQEVFFAVLATTLTLVAVFVPISFLP 464

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F   + +SIL+S   A+++   +    
Sbjct: 465 GQVGGLFREFGFVLAISILLSSVVALTLCPMLASRF 500



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 94/255 (36%), Gaps = 7/255 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+    V L  V     S  +  +  +        +  ++    +++  ++ +  V ++
Sbjct: 258 QVILKPHVKLGDVARVTLSPDVETVILRVNGKTGIGIGIVRKAQSNTLNISKGVRTVLEQ 317

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTL 700
           +  ++P S   +         +  + +  V + I+ +++++ I          L  I ++
Sbjct: 318 LKGVLPPSVHMSILSDDAIFIQSALHEVEVALAIAILSVILVIFLFLRDIRATLIPILSI 377

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L G   N+     ++   G  V+D +VV + +   ++     +  R  
Sbjct: 378 PVALIGTIAAIYLAGFSLNILTFLGLVLATGLVVDDAIVVLENI---VRRRNMGLGSRSA 434

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
                 E     + T++      +P++   G V      F   +A  I++++  ++ +  
Sbjct: 435 AVVGTQEVFFAVLATTLTLVAVFVPISFLPGQVGGLFREFGFVLAISILLSSVVALTLCP 494

Query: 818 PILLFIYDWRAKNAR 832
            +         ++++
Sbjct: 495 MLASRFLKQYVEDSK 509



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 91/258 (35%), Gaps = 18/258 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                 N+ V LSV+ +  E      +  +           L        A   +  +   
Sbjct: 784  FKTTDNKYVPLSVIANLHEKAIAPQLKREKRMSAVVLSTNLAPGVSLGNAYQAIENIASP 843

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + E   +  +     +    S  +   G     I+ + +L+ +  +F+ +      I T
Sbjct: 844  LLVEGNYIIPLGEAATLSETSSSFMSVFG-----IAFVIILLVLAAQFESFISGFIIIAT 898

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTTSIS 756
            + L +   +      G+  N+ +   ++ L+G    + +++    D++R+         S
Sbjct: 899  VPLGLGCAVIAMLFSGVSLNIYSQIGLILLVGVMAKNGILIVEFADQLREQ------GKS 952

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
             R+ ++ + N  L     T + A +  +P+ +    G     +    +  G+ +A   ++
Sbjct: 953  VREAVEDAANIRLRPVCMTMICAILGGIPLVLAKGAGAEARIALGWVIVGGLGLATIFTL 1012

Query: 814  FIAAPILLFIYDWRAKNA 831
            F+   + L +  +    A
Sbjct: 1013 FMTPVVYLLLGRFVQPKA 1030


>gi|288962345|ref|YP_003452640.1| multidrug efflux transporter [Azospirillum sp. B510]
 gi|288914611|dbj|BAI76096.1| multidrug efflux transporter [Azospirillum sp. B510]
          Length = 1024

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/497 (13%), Positives = 144/497 (28%), Gaps = 29/497 (5%)

Query: 56  LVLEVDEDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           +Q       ++  +  +       S  Q Q+ +T     +      
Sbjct: 46  ITVTTSYPGASPELMQGFIATPIEQAVATAEGLDYLTSSSTQGQSVVTAYVRLNFDPNVA 105

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
              V   +Q V  +L  +    +++ +T +  SI+    +   +   AI  S  + R   
Sbjct: 106 MTDVMAKVQQVKYQLPREANDPIILKSTGETTSILYMGFSSPDLPEAAI--SDYLTRVVQ 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
             +       Q          +    DP ++     + A +S      N           
Sbjct: 164 PVLSTVNGVAQAKILGGQTFAMRLWLDPVKMAARGISPADVSAAISSNNFQSAPGQTKGV 223

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           F+  +      + D                     +   D+                 + 
Sbjct: 224 FVITNVTTNTGLTD--------------------VEQFRDMVVKAKDGALVRMRDIATVE 263

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                      +                +    +E    +   LR    P     +   +
Sbjct: 264 LSSKSFDASVAMNGQQAVFIGVDSTPTGNPLNIVEDIRKMEPDLRRNLPPGMKMEIVYDS 323

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      +V++V+F+ +   +  L+   +I L+++     +  LG +
Sbjct: 324 TRFIQASIDEVVKTLVEAVAIVIVVIFLFLGSFRSVLIPIVTIPLSIVGAATFMLALGFS 383

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L L ++  +VL IGL VD  I+V E I       +S   +  +G       +    IT  
Sbjct: 384 LNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEHGKSAVAASLIGAREIIGPVISMTITLA 443

Query: 472 IATVVL---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
                +       G   R FA T+  S+++S   A+++   M   I++  K         
Sbjct: 444 AVYAPIGLLGGLTGALFREFAFTLAASVIVSGVVALTLSPMMCSVILKEGKPGRFAAFLD 503

Query: 529 SRFFLIPDCIAIQFMRA 545
            +F  + D    +    
Sbjct: 504 RQFERLADWYERRLDGM 520



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 55/151 (36%), Gaps = 7/151 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                +   L  I T+ L I     F    G   NL  + A++  IG  V+D +VV + +
Sbjct: 351 LFLGSFRSVLIPIVTIPLSIVGAATFMLALGFSLNLLTLLAMVLAIGLVVDDAIVVVENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPM 801
               +      S          E +G  +  ++       P+       G++   FA  +
Sbjct: 411 H---RHIEHGKSAVAASLIGAREIIGPVISMTITLAAVYAPIGLLGGLTGALFREFAFTL 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           A  ++V+   ++   +P++  +     K  R
Sbjct: 468 AASVIVSGVVAL-TLSPMMCSVILKEGKPGR 497



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 74/233 (31%), Gaps = 10/233 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++E+    +   +           +             LE   +            +   
Sbjct: 780  SVETGVGPNALNKYNQLPSATFSAVPMPGVSMGQAVAFLEEQARLQLPAGFNHAYLSESR 839

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
                   +L    ++    + I + + +  +F+     L  + ++ + I   L       
Sbjct: 840  QFVTEGNQL----MITFAFALIVIYLVLAAQFESLRDPLVILVSVPMSICGALLPLFFGV 895

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               N+     ++TLIG      +++ +  R+        +  R  I+ +    L   + T
Sbjct: 896  ATMNIYTQVGLVTLIGLISKHGILLVEFARE--MQLNEGVDRRTAIEHAARVRLRPILMT 953

Query: 776  SMAAFISVLPMA---VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + A  + +LP+      G +   S  + +  G+++    ++F+   +   +  
Sbjct: 954  TAAMVVGLLPLLTAAGAGAASRFSIGLVIVAGMLIGTLFTLFVLPAVYTLLAK 1006


>gi|332557661|ref|ZP_08411983.1| acriflavin resistance protein [Rhodobacter sphaeroides WS8N]
 gi|332275373|gb|EGJ20688.1| acriflavin resistance protein [Rhodobacter sphaeroides WS8N]
          Length = 1048

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/516 (12%), Positives = 146/516 (28%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L ++I   GL       L  + +   P                      +  
Sbjct: 22  RRPILAFVLNALILIAGLAA-----LYGADVRELPDVDSPVIT---------VTTTFDGA 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   S +        S R  ++++T+ F D    +  A  +   +  
Sbjct: 68  SSETIDQEVTDEIEGAASRVAGVKSISSSSRFGRSQVTVEFNDDTNLDVAASDMRDSISR 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D  +  +V       +++            A E +  +  Q   ++  +    
Sbjct: 128 IRNNLPDDADEPRIVKADANSEAVMRVAVTSA--RRSAQELTQIVEDQIESRLLAAPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D   L     T A +                             
Sbjct: 186 DLQIYGDRTPIFRVDVDQMLLASRGLTLADLRTALGNVAYDAPAGSLTSDRQSLVVRTTA 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V        + +                                   +           
Sbjct: 246 TVTTPAAFEALEIASD------------------------VRLGDVATVELGPEPGASYL 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +     +    + A L+A         V   +     G+   
Sbjct: 282 RANGENGVGLGIIRQAQSNTLEISKAVREIVAGLQADLPQDVRIFVTSDDATFINGAIHE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   +V+ ++++ +   +  L+   +I + ++ TLA + + G ++ + ++  +V
Sbjct: 342 VEIALGLSVLIVVAIIYLFLRDMRATLIPTLAIPVALVGTLAAIWIAGFSINILTLLALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+V E I     +      +  +G  + +  +  +  T     + L F  
Sbjct: 402 LATGMVVDDAIVVLENIVRWRAQGIGPRAAAVLGTQQVFFAVIATTTTLAAVFIPLSFLP 461

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F  T+ +S+L+S  TA+S+   +    
Sbjct: 462 GQTGGLFREFGFTLAISVLLSSVTALSLCPVLASRF 497



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 79/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  V +     + G    +        L  ++    +++  ++ +  +   +
Sbjct: 256 LEIASDVRLGDVATVELGPEPGASYLRANGENGVGLGIIRQAQSNTLEISKAVREIVAGL 315

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTLI 701
              +P                  I +  + + +S  I + I           L     + 
Sbjct: 316 QADLPQDVRIFVTSDDATFINGAIHEVEIALGLSVLIVVAIIYLFLRDMRATLIPTLAIP 375

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  TL    + G   N+  + A++   G  V+D +VV + +   ++     I  R   
Sbjct: 376 VALVGTLAAIWIAGFSINILTLLALVLATGMVVDDAIVVLENI---VRWRAQGIGPRAAA 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
                +     + T+       +P++   G        F   +A  +++++ +++ +   
Sbjct: 433 VLGTQQVFFAVIATTTTLAAVFIPLSFLPGQTGGLFREFGFTLAISVLLSSVTALSLCPV 492

Query: 819 I 819
           +
Sbjct: 493 L 493



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 666  IRKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTA 722
               G+      + + +L+ +  +F+ + +   +   +  +      FAL   G   N+ +
Sbjct: 855  TSSGLTATFGFAIVIVLLVLAAQFESFVSAFIVMATV-PLGLACAIFALVATGGSLNVYS 913

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ L+G    + +++ +      +L    +  R  I+ +    L   + T +A  + 
Sbjct: 914  QIGLVLLVGIMAKNGILIVEFAN---QLRDEGLPVRRAIEDACAIRLRPVMMTMIATVLG 970

Query: 783  VLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             LP+    G+   +       +  G+ +A  +++++     L +       A
Sbjct: 971  GLPLVFAAGAGAEAREVLGWIIVGGLGLATVATLYLTPVAYLLLAGLTRPKA 1022


>gi|213963175|ref|ZP_03391433.1| multidrug resistance protein, AcrB/AcrD family [Capnocytophaga
           sputigena Capno]
 gi|213954259|gb|EEB65583.1| multidrug resistance protein, AcrB/AcrD family [Capnocytophaga
           sputigena Capno]
          Length = 1053

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/624 (10%), Positives = 163/624 (26%), Gaps = 48/624 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKKEG-- 85
              + ++P   P               + +  +        + +     L   +      
Sbjct: 29  SLPISQYPDIAP-------------VTVQVSANYAGANAETVLKAVVIPLEEQINGVENM 75

Query: 86  --IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
             I   +       IT+ F      +  A  V   +   NS L  +  ++ +    +   
Sbjct: 76  DYITSSASNSGSANITVYFKQGTNGDIAAVNVQNAVSRANSILPSEVTQSGVTVRKQSSG 135

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
           +++      D      +     +    I  I                  +    +P +L+
Sbjct: 136 NLMFLTFFSDNKELDDVFLQNYLNINVIPAIKRISGVGDASAFGGKTYSMRVWINPQKLQ 195

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
                  +++      +        G       +          ++S             
Sbjct: 196 AYGLNPTEVTAAISAQSKEAAAGTLGQNSGSSYEYVIKYKGKYTQVS------------- 242

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
              +    +     G R         +                       S     + + 
Sbjct: 243 ---EYENIVLKALDGGRVLRLKDVATVELDALGYTGFSESNGRPAVAMGISQTPGSNAHE 299

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            I+    L   L+          +          + S    T      LV +V+++ +  
Sbjct: 300 IIQNIEKLLEELKPSFPEGITYTINYNANTFLDAAISKVVSTLLEAFLLVFLVVYIFLQD 359

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR-EEN 442
            +  L+   ++ ++++ T   L+L G ++ + ++  +VL IG+ VD  I+V E +  +  
Sbjct: 360 FRSTLIPAIAVPVSIVGTFFFLNLFGYSINMLTLFALVLAIGIVVDDAIVVVEAVHAKME 419

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILIS 499
           + ++    +     +     I    +      V + F GG      + F +T+ ++I+IS
Sbjct: 420 QTHEKAKPATISAMNEITGAIISITLVMAAVFVPVTFMGGTTGVFYKQFGVTLIVAIVIS 479

Query: 500 MFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
              A+++   +               +    K      ++                R   
Sbjct: 480 AINALTLSPVLCSLFLKPHGDKQYEEKSWFGKFFHKFNVAFNAATYKYGQTFTFFLRHKS 539

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V + +L             +  G          ++    +  + +      ++  + S  
Sbjct: 540 VTLVLLLLAGGGIYFANKSMKSGFVPNEDQGFVMMDVSMIPGASMERVANIMREVNESLS 599

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTR 633
           N  G +N                 
Sbjct: 600 NIPGVENVTFVTGRGMISGEGSNN 623



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 88/238 (36%), Gaps = 7/238 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V +            ++       +   Q    ++    + +E + +++    P     
Sbjct: 262 DVATVELDALGYTGFSESNGRPAVAMGISQTPGSNAHEIIQNIEKLLEELKPSFPEGITY 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
                        I K +  ++ + + + + ++I    +   L     + + I  T  F 
Sbjct: 322 TINYNANTFLDAAISKVVSTLLEAFLLVFLVVYIFLQDFRSTLIPAIAVPVSIVGTFFFL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   N+  + A++  IG  V+D +VV + +   M+          +   ++NE  G 
Sbjct: 382 NLFGYSINMLTLFALVLAIGIVVDDAIVVVEAVHAKMEQTHEKAKPATI--SAMNEITGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +  ++      +P+   GG+       F + +   IV++A +++   +P+L  ++  
Sbjct: 440 IISITLVMAAVFVPVTFMGGTTGVFYKQFGVTLIVAIVISAINAL-TLSPVLCSLFLK 496



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/441 (10%), Positives = 122/441 (27%), Gaps = 20/441 (4%)

Query: 405  LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
            LS +     +  + G  +  G   ++ +   +    E R        +    + A+  + 
Sbjct: 598  LSNIPGVENVTFVTGRGMISGEGSNNGMGFFKLKPFEQRSKLPGQD-IQSIINNAFRAVA 656

Query: 465  DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            +     +I        G G   G +  +       +       +  +  +++  +++   
Sbjct: 657  NVKDANVIFFQPSSVPGFGIGGGVSFVLLDKSGSDISEVNKNAQQFLGALMQRPEIQFAQ 716

Query: 525  INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             +    +      I ++        V   +      I   +             +   + 
Sbjct: 717  TSFNVNYPQYQMDINVERAMQSGITVSTILSTLQNYIGGFYATDFTLYGKQYRVMVQSLP 776

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              R    S+    +++          F               +      +    K   + 
Sbjct: 777  EARKDLNSLNNLFVKTASGTMAPITEFVTLTRTFGPQSLSRYNLFTSVSISAQNKPNYSS 836

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIV----------GVIISAIAMLIYIWI---RFKWY 691
               L  +Q         +  +   G+            +I     +  Y  +      + 
Sbjct: 837  GDALKAVQEVAAQTLNANYSIDYTGLTREEQTAGTQTILIFLLSLVFTYFILSAQYESYL 896

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + +L   I        LFG+E N+    +++ L+G    + +++ +     ++  
Sbjct: 897  LPLSVLFSLPFGIFGAYLGQWLFGLENNIYFQISLIMLMGLLAKNAILIVEFA---VQRR 953

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
                S       +    L   + TS A  + ++P+      G     S A   A G ++ 
Sbjct: 954  RMGESLSKAAINAAMARLRPILMTSFAFIVGLMPLVFASGVGAEGNRSVATGAAVGQLIG 1013

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
                + +   + +   D + +
Sbjct: 1014 TFFGLIVIPVLFVIFQDLQER 1034


>gi|217976365|ref|YP_002360512.1| acriflavin resistance protein [Methylocella silvestris BL2]
 gi|217501741|gb|ACK49150.1| acriflavin resistance protein [Methylocella silvestris BL2]
          Length = 1036

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/635 (12%), Positives = 168/635 (26%), Gaps = 38/635 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G +      L       +P+                    L    
Sbjct: 10  RPVATSLLMAAILIAGAVAYRFLPLAALPEVDYPTIE--------------VRTFLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S     + +TL F+ +   +    +V   +   
Sbjct: 56  PEVMTSAVTAPLERQLGQMPGLNQMTSSSSAGASVVTLQFSLNLTLDVAEQQVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NS L  D     + +      + +L+  ++        +       +   +I       Q
Sbjct: 116 NSLLPADLPAPPIYSKVNPADAPILT-LSVTSKTLSLTDLQDIGETRIAQKIAQQPGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F       +      
Sbjct: 175 VTISGGQRPAIRIQFNPQALAAYGLNIDDLRSTISNANVNAPKGGFDGPHQSSTITANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +                       K   +I                 I            
Sbjct: 235 LTS--------------------IKDYRNIVIAYRNNAPVRLSDVATIIDGPENTKLRAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +     ++   L   LR+         +          S +  
Sbjct: 275 ANGEPAIIINIRRQPGANVIAVADSVQKLLPNLRSTLPAAVDITILSDRTTTIRASVADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV+ V+F+ +      ++   S+ L+++ TL  + LLG +L   S+  + +
Sbjct: 335 QVELGISVALVVAVIFVFLRNVPATIIPSLSVPLSLVGTLVAMYLLGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I            +   G  +   TI    ++ L   + L F G 
Sbjct: 395 STGFVVDDAIVMIENISRYVEDGDEPLEAALKGSHQIGFTIISLTVSLLAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FAIT+ ++I+IS   ++++V  M   +IR++         L         IA
Sbjct: 455 VIGRLFHEFAITLAVTIIISAVVSLTLVPMMCARLIRHRPESQRSRLDLWAERAFNSVIA 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                 R       +   +    L  T  L   I             + V  +    + +
Sbjct: 515 FYGRMLRIVLRHQPLTLFVAIATLGLTIFLYIVIPKGFFPAQDTGMIQGVSEATQGISFD 574

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           ++    +       +   +  +    G       +
Sbjct: 575 AMATLQMRMAETISKDEAVASVSSFIGVDGDNPTL 609



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 72/165 (43%), Gaps = 7/165 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           +G+ ++ +  +I++++R      +    ++ L +  TL    L G   +  ++ A+    
Sbjct: 338 LGISVALVVAVIFVFLR-NVPATIIPSLSVPLSLVGTLVAMYLLGFSLDNLSLMALTIST 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +         +   K  ++     +  +++    ++P+   G
Sbjct: 397 GFVVDDAIVMIENI---SRYVEDGDEPLEAALKGSHQIGFTIISLTVSLLAVLIPLLFMG 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G +   FAI +A  I+++A  S+ +   +   +   R ++ R
Sbjct: 454 DVIGRLFHEFAITLAVTIIISAVVSLTLVPMMCARLIRHRPESQR 498



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/201 (16%), Positives = 78/201 (38%), Gaps = 6/201 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +E ++   TEI    +   +               +  +I + + M I + + ++ + 
Sbjct: 823  AAVEAIEAAQTEIGLPHSFTVSMQGAAGAFTTSTSNELFLIIAAVVTMYIVLGVLYESFI 882

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  ++TL       L     FG E ++ AV  V+ LIG    + +++ D         
Sbjct: 883  HPVTILSTLPSAGVGALLALIAFGFELDVVAVIGVILLIGIVKKNAIMMIDFALD--AER 940

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               ++  D I ++        + T+MAA +  LP+ +    G  +     + +  G++V+
Sbjct: 941  HQGLAPEDAIFEACLLRFRPILMTTMAALLGALPLMLGQGVGSELRQPLGVSIVGGLIVS 1000

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
             + ++F    I L+      +
Sbjct: 1001 QALTLFTTPVIYLYFDRLARR 1021


>gi|187923571|ref|YP_001895213.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
 gi|187714765|gb|ACD15989.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
          Length = 1044

 Score =  143 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/621 (12%), Positives = 174/621 (28%), Gaps = 45/621 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I  +GL+      L       +P+                         
Sbjct: 10  RPVGTALLMAAIMLVGLVALRFLPLSALPEVDYPTIQ--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F+     +    +V   +   
Sbjct: 56  PDVMTSSVTAPLERQFGQMPSLNQMSSQSSAGSSIITLQFSLDLPLDIAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +++   I        +       +   +I        
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPIIT-LAITSKTLPLTQVQDMADTRLAQKISQVAGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + +P  L         +       N +     F      D     Y 
Sbjct: 175 VGLSGGQRPAVRIQANPRALAAYGLNLDDLRTTISNLNVNTPKGNF------DGPTRNYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                             R         I +       G  
Sbjct: 229 INANDQLTDAD--------------AYKSAVVAYKNGRAVMLTDVATIVQGAENTKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    +++   L   L+          V          S    
Sbjct: 275 VDGTPAIILNVQRQPGANVIQVVDSIKKLLPQLQQALPAALDVEVVTDRTTTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  + +
Sbjct: 335 QFELAMSVVLVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + ++   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGEAPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
             G     FAIT+ ++I+IS   ++++V  M   ++R+                I   I 
Sbjct: 455 VVGRLFHEFAITLAVTIVISAVVSLTLVPMMCAKLLRHTPPHESHRFEAKAHRAIDWVIA 514

Query: 539 ------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R R   V   +   +  +  +F     + +   G IQ    A + V  +
Sbjct: 515 RYAVALTWVLNRQRSTLVVAVLTLVLTGVLYVFIPKGFFPVQDTGVIQAITQAPQSVSYA 574

Query: 593 VVRSNLESLQIGDISFQNFDG 613
            +    + L    +   + + 
Sbjct: 575 SMAERQQELAAQILKNPDVES 595



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 54/136 (39%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    L G   +  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGEAPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAVVSLTLVP 483


>gi|167616057|ref|ZP_02384692.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis Bt4]
          Length = 1036

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/608 (11%), Positives = 179/608 (29%), Gaps = 42/608 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL   +        + ++P A+    IS+  D  G S       
Sbjct: 22  RRPVLSLVFSLLILLVGLRALM-----SLPVRQYP-ALESATISVATDYPGASQ------ 69

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     +  +          +  Q ++ +      +   +    +V   +Q 
Sbjct: 70  --DLMQGFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQ 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     + +  ++R     +       
Sbjct: 128 VKYKLPADAYDSVITKLTDAPTAVMYLGFASDTL--SIPQITDYVVRVAQPLVTTVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D +RL         ++      N                     
Sbjct: 186 SAEILGGQNLAMRVWLDATRLAAHGLAAGDVAAAIRANNVQAAPGQVKGSLTIADISANT 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D    +                   + +     G           +           
Sbjct: 246 DLTDVGAFN------------------EMVVKSAPNGGGLVRLKDVATVEIGGENYNSSA 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +   G +   +                      S + 
Sbjct: 288 LMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVQIANMFDGARFVNASIAE 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L+++ + AL+   G +L L ++  +V
Sbjct: 348 VRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMV 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +  +G     S +     T +     +   G
Sbjct: 408 LAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++L+S   A+++   +   ++  +       K+I+         
Sbjct: 468 GLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHA 527

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + +     +            + +G I + V A +  +L  
Sbjct: 528 YRRGLHASLAARPAILLIGAGVLGGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDY 587

Query: 594 VRSNLESL 601
           +      +
Sbjct: 588 MERYAPDI 595



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 9/204 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            VL  +++     V ++ + +          E+       + I  + + +++     +  
Sbjct: 316 AVLPAMERNKPASVQIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLG---SFRA 372

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 373 VIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIE 429

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                         E     +           P+ + G   GS+   FA  +A  ++V+ 
Sbjct: 430 QGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSG 489

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ ++  +   +   R    R+
Sbjct: 490 IVALTLSPMLGSLLLTSRMSEGRV 513



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 60/156 (38%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L I   L    L     N+     ++TLIG 
Sbjct: 865  GFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N       +  R+ I+++    L   + T+ A    ++P+    G 
Sbjct: 925  ISKHGILMVS--FANDLQRHEGLGRREAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 982

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V    ++F+   +  F+  
Sbjct: 983  GAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAK 1018


>gi|258510644|ref|YP_003184078.1| acriflavin resistance protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477370|gb|ACV57689.1| acriflavin resistance protein [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 1041

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/549 (10%), Positives = 152/549 (27%), Gaps = 38/549 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + +L   +  +G+   L            P A      +                
Sbjct: 9   RRPVTITMLMIALVAVGVFALLHLPEELFPKLNLPVAAVVTSWN--------------GA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++    L    +         + + + F      +   +++   +  
Sbjct: 55  SPEEVEKQISHPLEQALEGLSGVNLIESQSTAGSSLVIVEFNYGVNLDEELNQMRSLVNR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D    L+       + I+       + +      S          I       
Sbjct: 115 VQPELPSDATTPLVQQFDPNSLPIMRIAVYGSKGV-SLQTVSDAATNVVEPAIERLNGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  ++ Q+  E DP +L+    +  ++       N S          L        
Sbjct: 174 GVQEAGGLVRQITVEVDPDKLKAYHLSIEQVVNAIAANNLSADAGQVQKGNLLIPFHVSG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    ++  + +                                   I    A V    
Sbjct: 234 EIGSASQLGDLEIPLPL--------------------RGDVKLKDIAQIEDGHAPVELVS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          S  +  +              ++    P     V   +      +   
Sbjct: 274 TVNDAPAVTLSISQASDANIVQVSNGVWQALPSIQQQLPPGVHVEVLTDDAQPVRDTIHT 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +     ++V+ +I+   +  +V   +I +  + T AL++  G ++   ++  + 
Sbjct: 334 VVNHTVLGFIFGILVILLILRSVRSTIVVAVAIPIATLSTFALMAAAGLSINSITLGSLA 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IATVVLFFF 480
           +G+G  VD +I+V E I    ++  S   +  +G       +F +    + +    +F  
Sbjct: 394 VGLGSLVDFSIVVLESIFRSRKRGLSPIEAAIVGTEEVGLAVFVAACAQISVFAPSIFVP 453

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G   +  ++T+  S + ++F A++    +   +++ ++    D  P     +     
Sbjct: 454 GIAGQFFKPLSLTVSFSHVAALFVALTFTPMLASRLLKGRRFDEPDRLPGRDAPMRWYAP 513

Query: 539 AIQFMRARF 547
                R   
Sbjct: 514 FDWSARFMH 522



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 86/256 (33%), Gaps = 14/256 (5%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         V  + L ++  G              V +   P         LE+ K+ 
Sbjct: 783  DLTVENQAGQMVPVTKLGTVSNGSEPPSITHINGVRTVEVTATPYGITQGRAQLELAKQL 842

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
             +  VP          G  + + +    +   + S   + + +   F+        + +L
Sbjct: 843  KSIRVPEGYSVGFGQGGAFLRQTMFD-MLWAFVFSVALLYMLMASLFESLLMPFVIMFSL 901

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISF 757
                        L     N+ +   V+ ++G   N+ +V+ D   R+R+           
Sbjct: 902  PPTFIGAALGLTLTHRSLNVDSAIGVIMVMGLVANNAIVLVDYANRLRRE------GKRL 955

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            R+ + ++    L   + ++    +++LP+ +    G   + S A  +AFG+  +   ++ 
Sbjct: 956  REALMEAGPVRLRPILMSTATTVLAMLPLVIGYGKGAETLASMATVIAFGLTFSTMVTLL 1015

Query: 815  IAAPILLFIYDWRAKN 830
            +   + + I   R + 
Sbjct: 1016 LVPAVYMAIAGKRDER 1031



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 78/273 (28%), Gaps = 5/273 (1%)

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
           +      G        G +++ +     V L  +    +     ++     D     L  
Sbjct: 226 LIPFHVSGEIGSASQLGDLEIPLPLRGDVKLKDIAQIEDGHAPVELVSTVNDAPAVTLSI 285

Query: 621 LQYQPGD-SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            Q    +       V + +     ++ P   ++        +   +       V+     
Sbjct: 286 SQASDANIVQVSNGVWQALPSIQQQLPPGVHVEVLTDDAQPVRDTIHTVVNHTVLGFIFG 345

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           +L+ + I       +     + +    T    A  G+  N   + ++   +G  V+  +V
Sbjct: 346 ILVILLILRSVRSTIVVAVAIPIATLSTFALMAAAGLSINSITLGSLAVGLGSLVDFSIV 405

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           V + +    +     +S  +       E        + A      P     G     F  
Sbjct: 406 VLESI---FRSRKRGLSPIEAAIVGTEEVGLAVFVAACAQISVFAPSIFVPGIAGQFF-K 461

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P++  +  +  +++F+A      +     K  R
Sbjct: 462 PLSLTVSFSHVAALFVALTFTPMLASRLLKGRR 494



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 63/521 (12%), Positives = 141/521 (27%), Gaps = 48/521 (9%)

Query: 20   LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYS 74
            L A+   +  + +   P    +   ++G D      + + V               +   
Sbjct: 542  LFAITALMFVASVAMVPKIGFELVPNVGED-----EMTVSVQTPPGTSLAATEQVTKRVE 596

Query: 75   DELRSFLKKEGIGVFSM---------RQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
               R+ L         +            Q  +T+ F DS   +++    + F Q   S 
Sbjct: 597  ALARTHLHGIQQIDAQIGGNTYAALPATNQATVTVRFEDSVSSQDVEAMTSQFNQLAQSV 656

Query: 126  LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                              +       I       + +  + +   + ++G  E       
Sbjct: 657  SGATVTAAAASANGASGPASDQISVQIQGPDVAELTRLADQVAAAMRRVGGLEDIQNGAT 716

Query: 186  SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
            +    + L    DP+ L +   T   +                              +  
Sbjct: 717  AAMPNVTLK--LDPAALAEYGLTAQAVESVLKAD-----------------------IGG 751

Query: 246  KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
            ++  +                    ++S  +             + K   V       + 
Sbjct: 752  QIASTYDVNGNTYNIVVELPPSYAQNLSHLQDLTVENQAGQMVPVTKLGTVSNGSEPPSI 811

Query: 306  PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
              IN              T   A +  A         +   V     GA L         
Sbjct: 812  THINGVRTVEVTATPYGITQGRAQLELAKQLKSIRVPEGYSVGFGQGGAFLRQTMFDMLW 871

Query: 366  CAIVAGLVLIVLFMIVL-YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
              + +  +L +L   +        V  FS+    I     L+L   +L + S  G+++ +
Sbjct: 872  AFVFSVALLYMLMASLFESLLMPFVIMFSLPPTFIGAALGLTLTHRSLNVDSAIGVIMVM 931

Query: 425  GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL---FFFG 481
            GL  ++ I++ +      R+ + +  +L          I  S  T ++A + L   +  G
Sbjct: 932  GLVANNAIVLVDYANRLRREGKRLREALMEAGPVRLRPILMSTATTVLAMLPLVIGYGKG 991

Query: 482  GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
               +   A  +   +  S    + +V A+ + I   +  ++
Sbjct: 992  AETLASMATVIAFGLTFSTMVTLLLVPAVYMAIAGKRDERT 1032


>gi|148981305|ref|ZP_01816365.1| protein export protein SecD [Vibrionales bacterium SWAT-3]
 gi|145960937|gb|EDK26265.1| protein export protein SecD [Vibrionales bacterium SWAT-3]
          Length = 474

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 96/390 (24%), Positives = 181/390 (46%), Gaps = 36/390 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L++E I
Sbjct: 93  NLAASTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVGQQEEAFRSELREEKI 152

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R    + + +   +          +    Q        D       +     +  
Sbjct: 153 RYRAIRPSGKDAVEVILRNEEQLAEAKSLLQSKHQ--------DMTFVDSDSNGRFSLIA 204

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
             ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 205 NFTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGASRIVVELPGVQDTARAKEI 264

Query: 206 LGTTAKMSFHKV-----LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F +V     L   +      G    +D DG   +++ +V + G  +    ++
Sbjct: 265 LGATATLEFREVDSSADLAAAASGRAPAGSEIKQDRDGRPVVLKKRVILGGSSITD-ASS 323

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------ 302
              +  +P V+IS D  G  +    +R NIGK +A V                       
Sbjct: 324 SVDEYGRPQVNISLDSEGGSKMSAFSRQNIGKLMATVFAEYKDSGRKTPEGKVILTKHEE 383

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I 
Sbjct: 384 VINQATIQSALGRNFRITGIDSTAEAHNLALLLRAGALIAPISIVEERTIGPSMGKQNID 443

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
            G  A+V G+  ++LF ++ Y  +GL+A+ 
Sbjct: 444 MGIMAMVWGMAAVMLFTLLYYRSFGLIANV 473


>gi|227549160|ref|ZP_03979209.1| preprotein translocase subunit SecF [Corynebacterium
           lipophiloflavum DSM 44291]
 gi|227078720|gb|EEI16683.1| preprotein translocase subunit SecF [Corynebacterium
           lipophiloflavum DSM 44291]
          Length = 394

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/317 (20%), Positives = 140/317 (44%), Gaps = 11/317 (3%)

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L     AI F+       GI++   + ++  +   G N GIDF+GG +L + A
Sbjct: 21  TRSRYDRLYTGEGAIDFIGRSKLWYGITLALVVVALAAMLVRGFNLGIDFEGGTKLSMPA 80

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD----SVAQTRVLEMVKKK 641
              V   V  + +++  +     Q         + +  +         A+  + E  +  
Sbjct: 81  GDLVAEEVETTFIDATGVTPELTQIVGAGDARTLEINSEHLTQQQIDQARQAIFEQHQPL 140

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             E            V       +  + ++ + +  +A   Y+ +R K   A+ A+  L+
Sbjct: 141 DAEGNASPDAIGDSTVSESWGSTITNRMLLAMGVFLLAAAAYVALRLKREMAVAAMAALL 200

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISFRD 759
           +D    LG +ALFG+E     +  +LT++ +S+ D V+V+D++R+N    L +   ++ +
Sbjct: 201 VDGVLILGTYALFGLEITPAMIIGLLTVLTFSIYDTVIVFDKVRENTAGVLDSRRSTYAE 260

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIF 814
             + ++N+T+ RS+ TS+ + + ++ + V      G   +   A+    G++    SS+F
Sbjct: 261 EANLAVNQTVMRSISTSVISALPIISLMVVAVWMMGIGTLRDLALIQLIGVIEGIFSSLF 320

Query: 815 IAAPILLFIYDWRAKNA 831
           +A PIL+ + + + K+ 
Sbjct: 321 LATPILVSLVNRQDKHK 337


>gi|207724027|ref|YP_002254425.1| transporter protein [Ralstonia solanacearum MolK2]
 gi|206589235|emb|CAQ36197.1| transporter protein [Ralstonia solanacearum MolK2]
          Length = 1032

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/679 (11%), Positives = 188/679 (27%), Gaps = 43/679 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEV 60
           RN    ++L+ ++   GL         +  +   P   +P   ISL              
Sbjct: 9   RNPVPAILLFILLTLAGLY-----GFRELPVANLPDLDLPSVTISL----------TQPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    +   + L        S+   Q  ITL F   +   +   +    + 
Sbjct: 54  AAPAQLETEVARKVENSLATLSGVKHMRTSITDGQVSITLEFILEKKLSDALIETKDAVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S L VD ++  +        + +L      ++   A   S  +       +      
Sbjct: 114 RIRSDLPVDLQQPSISAVRIGGEATLLYAIASSRMNEEA--LSWFVDDTVNKTVLGVPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      +  Q+  E DP RL  L  T   +S           G    +     +    
Sbjct: 172 GKFERVGGVQRQVRVEVDPVRLAALGATAVDVSRALKTVEQESSGGRGQLGGAEQAVRTI 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V    E+                      +       RR        +   +A     
Sbjct: 232 ATVRQAEEL--------------------NRLPLVLSDGRRVNLDQVATVSDAIAERTQI 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +L    +                          L+A +  +    +    V        
Sbjct: 272 ALLDGKPVVGFKIYRAKGFDETRIAAGVAQALGKLQAANPGLSFTKISG-TVDYTQEQFE 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L ++V++  +   +  L++  ++ L+++   A +  LG +L   ++  +
Sbjct: 331 GSMHMLYEGALLAVLVVWWFLRDWRATLISASALPLSILPAFAAMHWLGYSLNTLTLLAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G+ VD  I+  E I   +R  + +  +     +     +  + +T ++  +     
Sbjct: 391 AVIVGILVDDAIVEIENIERHSRMGKPIKQAAGEAVTEIALAVIATTMTLVVVFMPTAMM 450

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      + F  T  +++L S+  A  +   +  ++++    ++   +       +   
Sbjct: 451 SGVPGLFFKQFGWTAVVAVLSSLLVARVLTPMLAAYLLKPHAGQTEAKDGALMTRYLGWV 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                 R R   V    +F   +  +            +G   + V       L+  R+ 
Sbjct: 511 RWCLAHR-RLTLVAAVAIFIGSAALVPLLKTGLIPPSDRGYSSVSVELPPGSSLAATRAT 569

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            E+ +      +  D     +   Q   G       V       +         Q     
Sbjct: 570 TEAARQAMGPIKGIDHVMTMVGDAQAVGGGQTQAGEVRRATMTLVLAPRGERPSQADIET 629

Query: 658 GPKISRELIRKGIVGVIIS 676
             + +   +      + + 
Sbjct: 630 QVRRALINVPGARFSLGVG 648



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 75/249 (30%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            L +   R V+L  V +  +++                    + +  D       +    
Sbjct: 244 PLVLSDGRRVNLDQVATVSDAIAERTQIALLDGKPVVGFKIYRAKGFDETRIAAGVAQAL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K+    P  +             +      +    + +A+L+  W    W   L + + 
Sbjct: 304 GKLQAANPGLSFTKISGTVDYTQEQFEGSMHMLYEGALLAVLVVWWFLRDWRATLISASA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I          G   N   + A+  ++G  V+D +V  + +    +        + 
Sbjct: 364 LPLSILPAFAAMHWLGYSLNTLTLLALAVIVGILVDDAIVEIENI---ERHSRMGKPIKQ 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              +++ E     + T+M   +  +P A+  G        F       ++ +   +  + 
Sbjct: 421 AAGEAVTEIALAVIATTMTLVVVFMPTAMMSGVPGLFFKQFGWTAVVAVLSSLLVARVLT 480

Query: 817 APILLFIYD 825
             +  ++  
Sbjct: 481 PMLAAYLLK 489



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/166 (12%), Positives = 66/166 (39%), Gaps = 6/166 (3%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++I  + +   + + F  ++  L  ++ + L +        L     ++ ++  ++ L
Sbjct: 848  MAIVIGLLCVFCVLVLLFHDFFQPLTILSAVPLSLGGAFIALLLSKGMLSIPSMIGLVML 907

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +     + +    +   + +  + ++     V T++A    +LP+A+ 
Sbjct: 908  MGIVTKNSILLVE--YAVVGIQERGLPLHEALIDACHKRARPIVMTTVAMIAGMLPIALG 965

Query: 789  WGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G         AI +  G+V +   S+ +      ++     +  R
Sbjct: 966  LGADASFRQPMAIAVIGGLVTSTGLSLLVVPVAFTYVDGLERRVRR 1011


>gi|42523244|ref|NP_968624.1| NolG efflux transporter [Bdellovibrio bacteriovorus HD100]
 gi|39575449|emb|CAE79617.1| NolG efflux transporter [Bdellovibrio bacteriovorus HD100]
          Length = 1039

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/679 (9%), Positives = 180/679 (26%), Gaps = 50/679 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++ L  ++  +G +      L    +D +P       + +               
Sbjct: 9   RQPVLIMSLVILMLTLGGIS-----LKNLPIDLYPDVTLPTVVVV---------TSYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S +           +  + +++ F+          +V   +Q 
Sbjct: 55  GPQEVETEITKVLEDQVSTISGVQKVSSQNMEGVSILSIEFSLKTNLNFAEQEVRAKVQN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D  + ++      +  I+      D       + + EII     Q        
Sbjct: 115 SMRELPDDVDEPVIRKVGPSDAPIMYISLQADMEDGKLYDLAKEIIS---PQFEQVYQVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    +  RL     + + ++                        G + 
Sbjct: 172 QVEILGGRKREIHVSLNRDRLNGTDISASTVAEALRS-------------------GGRN 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +   K+++     +  T       ++    +             T   I   L       
Sbjct: 213 IPAGKIDVGETQFSFRTLGQYQSVNEIGSTVLRLADVYHPITIGTVARIEDTLQDESSRS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL---NIVEERNVGADLGS 358
            L            ++  +     +      A +        +     + +        +
Sbjct: 273 RLNGKKAINFSIYRQSGANSVKVADDIAKKVAKINEDFKAQGVDAQMKIVQDTSNKIRAN 332

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 +      L ++V++  +   K  L+  F++  +++    ++ + G ++ + S+ 
Sbjct: 333 VYDVYESIIFGVILTILVVYFFLGSMKSTLITGFALPNSLLGACIMMGIFGFSINIMSLL 392

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV-- 476
            + L +GL VD  I+V E I  +     S   +  +G +     +  + +T L       
Sbjct: 393 AMSLVVGLLVDDAIVVRENIFRKLEIGMSPKKAAVVGTNEVTLAVVATTLTILAVFGPIG 452

Query: 477 -LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            L    G   + F +T+  ++++S+F  + +   +  ++      K              
Sbjct: 453 NLQGIVGQFFKQFGLTICFAMIVSLFDGLFVAPTLSAYVAGEHSHKPPTSKFGIWNQRAL 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                   R   W V         ++     H     +   G     +     V  + + 
Sbjct: 513 KAFDRFQTRMEQWYV--------KTLGWALAHPAKTILASVGIFVFSLFIATRVPFTFLP 564

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +                      V  +     +     + +++    T            
Sbjct: 565 AQDNGEFYVQFELAPGASLDGTDVIAKEIENRTRKFPEIEDILTFVGTGNGEPHKGSLYI 624

Query: 656 IVGPKISRELIRKGIVGVI 674
            + P   R +        +
Sbjct: 625 RLVPSKKRSMNTTETKAAL 643



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 78/240 (32%), Gaps = 16/240 (6%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                +     RS L   +  + S     G  +  V        +    + +  + +   
Sbjct: 260 RIEDTLQDESSRSRLNGKKAINFSIYRQSGANSVKV--------ADDIAKKVAKINEDFK 311

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                + ++  +    KI   +       +    + +L+  +        L     L   
Sbjct: 312 AQGVDAQMKIVQDTSNKIRANVYDVYESIIFGVILTILVVYFFLGSMKSTLITGFALPNS 371

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN-MKLYTTSISFRDLID 762
           +        +FG   N+ ++ A+  ++G  V+D +VV    R+N  +     +S +    
Sbjct: 372 LLGACIMMGIFGFSINIMSLLAMSLVVGLLVDDAIVV----RENIFRKLEIGMSPKKAAV 427

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              NE     V T++       P+       G     F + + F ++V+    +F+A  +
Sbjct: 428 VGTNEVTLAVVATTLTILAVFGPIGNLQGIVGQFFKQFGLTICFAMIVSLFDGLFVAPTL 487



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 81/200 (40%), Gaps = 11/200 (5%)

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYF 692
            + E+     TE+ P   +  + +   +   EL+   +V + +  + + + +  +   +  
Sbjct: 827  IAEINSLSKTELKPPPGVTFSFVGEAERFAELMTNILVSLGLGVMFIYLVLASLYGSFIT 886

Query: 693  ALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             +      ++ +     F +LF     F+L ++   + L+G +  + +++ D   +    
Sbjct: 887  PV--TIMSVIPLAACGAFLSLFITRSSFDLFSMIGCVMLMGLATKNSILLIDSAAE---Q 941

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                 S  + + K+    L   + TS+A    ++P+A+          S  I +  G + 
Sbjct: 942  QKHGTSPTEALLKAGETRLRPIIMTSLALIAGMVPVAIGLNEASKSRTSLGIVVIGGTIS 1001

Query: 808  AASSSIFIAAPILLFIYDWR 827
            +   ++++   + L++  ++
Sbjct: 1002 STLLTLYVIPAVHLYVDRFQ 1021


>gi|161619039|ref|YP_001592926.1| acriflavin resistance protein [Brucella canis ATCC 23365]
 gi|260566374|ref|ZP_05836844.1| acriflavin resistance protein [Brucella suis bv. 4 str. 40]
 gi|161335850|gb|ABX62155.1| acriflavin resistance protein [Brucella canis ATCC 23365]
 gi|260155892|gb|EEW90972.1| acriflavin resistance protein [Brucella suis bv. 4 str. 40]
          Length = 1029

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 161/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +   +       
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAVESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 AFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFIG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFIGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEILGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|24373488|ref|NP_717531.1| AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
 gi|24347785|gb|AAN54975.1|AE015635_9 AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
          Length = 1091

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/513 (13%), Positives = 143/513 (27%), Gaps = 41/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    I   G++        +  +   P                    + +  
Sbjct: 9   KRPVTVWMFMLAIMLFGMV-----GFSRLAVKLLPDLSYPTLT---------IRTMYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 55  APVEVEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISEST 180
           +   L +D KK LL+        I+    ++       ++Q       +   ++      
Sbjct: 115 I--ALPLDVKKPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++  + +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQEVHIQLNQEKLSQLNLNADDIKRRINEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I G             +   +  +                 I        D 
Sbjct: 213 INLSAGKVIQGDREYLVRTLNQFNSLDELGQVIVYRDAQTLVRLFEVATITDAYKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +        +           V          + S
Sbjct: 273 TRIGSQESIELAIYKEGDANTVAVAKKLRDELVKINK-DPQQNKLEVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  + + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALMGSVLAMLVIYLFLRNIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L IGL VD+ I+V E I     +  S   +   G       IF S +T L   V L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRCRSEGMSKLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFV 451

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
               G      A+T+  ++L S+  A++ +  +
Sbjct: 452 DGIAGALFSDQALTVTFALLASLLVALTSIPML 484



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 65/220 (29%), Gaps = 6/220 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++      L  +                        + L            V + ++ +
Sbjct: 244 VIVYRDAQTLVRLFEVATITDAYKERSDITRIGSQESIELAIYKEGDANTVAVAKKLRDE 303

Query: 642 ITEIVPLSTIQNTEIVGPK---ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           + +I         E++  +   I   +       ++ S +AML+           L    
Sbjct: 304 LVKINKDPQQNKLEVIYDQSEFIESAVSEVTSSALMGSVLAMLVIYLFLRNIIPTLIISI 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  +S  
Sbjct: 364 SIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRCRSEGMSKL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           D       E  G    ++M      +P+    G     F+
Sbjct: 421 DAAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFS 460



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 86/217 (39%), Gaps = 8/217 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V L          +  +   ++ +   V  +++Q       +      +   + +I+
Sbjct: 856  QQRVALVSANLAYGDLSDAVADAQQILAAQVLPTSVQARFGGQNEEMEHSFQSLKIALIL 915

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    +     ++     ++ L G  V
Sbjct: 916  AVFLVYLVMASQFESLLHPLLILVAVPMALAGSVLGLYITQTHLSVVVFIGLIMLAGIVV 975

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+    +L +  +   + I  +    L   + T++   + +LPMA+    G 
Sbjct: 976  NNAIVLVDRIN---QLRSEGVEKLEAIRVAAKSRLRPIMMTTLTTVLGLLPMALGLGDGA 1032

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             V    AI + FG+ + ++    I  P+L  ++D + 
Sbjct: 1033 EVRAPMAITVIFGLSL-STLLTLIVIPVLYAMFDRKK 1068


>gi|319947804|ref|ZP_08021998.1| preprotein translocase subunit SecD [Dietzia cinnamea P4]
 gi|319438528|gb|EFV93454.1| preprotein translocase subunit SecD [Dietzia cinnamea P4]
          Length = 542

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 112/497 (22%), Positives = 199/497 (40%), Gaps = 41/497 (8%)

Query: 45  SLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD 104
            LG+DL+GG+ + L     D     L++  D +R  +   G+   ++    + I L+   
Sbjct: 20  KLGIDLQGGTRVTLIPKG-DPDEADLRLAQDIIRDRVDGLGVAGTTVVIEGSNIVLTVP- 77

Query: 105 SRFKENIADK---VTLFLQGVNSKLN--VDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
                   D      L ++ V          ++ +     +++      +    +     
Sbjct: 78  GEDSSQARDLGTTSQLTIRPVLEVQPVAEGDREPVPADKGDRDAVAAAVEEARAERQGEP 137

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
            E   ++   R  +  +                     DP++     G  AK        
Sbjct: 138 AELIEKLPTFRCPERDVLAG----------------FDDPAQALIACGEGAK-------- 173

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
                     V    D       ++ +  +     +G              +    E G+
Sbjct: 174 -YVLGPVPLLVGEPEDGQR----LDGQQIVKDSVSHGFNQQAGKNEVSFRFNAGPGEQGS 228

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQISGNFTIETAGILAAMLRAG 338
             +  +T++N+ + +A++LDG V++APV+           I+G+FTI+ A  LAA LR G
Sbjct: 229 ATWSRLTQENLQRQIAILLDGEVISAPVVQGVTPVGSATSITGDFTIDEAASLAANLRYG 288

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
           +LPI        NV A LG  S+  G  A   G +L++ +    Y   G++A  S+ L+ 
Sbjct: 289 ALPISFEDPNVDNVPASLGLASLEAGLLAGAIGFLLVLAYSAFFYRLLGVLAFVSLLLSF 348

Query: 399 ILTLALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           +LT  +L  LG T+     L  IAG+V+GIG+  DS ++  ERI++E R       ++  
Sbjct: 349 LLTYVVLVFLGYTVDYSLDLAGIAGLVIGIGMTADSYVVFFERIKDELRDGHRFRSAVPR 408

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            +  A  TI   N+ +LI  VVL+    G VRGFA T+GL+ ++ +F A ++   ++   
Sbjct: 409 AWKSAGRTIVTGNMVSLIGAVVLYLLASGEVRGFAFTLGLTTVMDVFVAFTVTWPLVYLA 468

Query: 515 IRYKKMKSIDINPLSRF 531
                      N + R 
Sbjct: 469 STRPLFAKPSANGMGRM 485



 Score =  100 bits (248), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 78/241 (32%), Gaps = 8/241 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               ++  +  L  G++           +       GD             +   +    
Sbjct: 235 TQENLQRQIAILLDGEVISAPVVQGVTPVGSATSITGDFTIDEAASLAANLRYGALPISF 294

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              N + V   +    +  G++   I  + +L Y    ++    + A  +L+L    T  
Sbjct: 295 EDPNVDNVPASLGLASLEAGLLAGAIGFLLVLAYSAFFYRL-LGVLAFVSLLLSFLLTYV 353

Query: 710 FFALFGIEFN----LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                G   +    L  +A ++  IG + +  VV ++R++  ++       FR  + ++ 
Sbjct: 354 VLVFLGYTVDYSLDLAGIAGLVIGIGMTADSYVVFFERIKDELRDGHR---FRSAVPRAW 410

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  V  +M + I  + + +     +  FA  +    V+    +  +  P++     
Sbjct: 411 KSAGRTIVTGNMVSLIGAVVLYLLASGEVRGFAFTLGLTTVMDVFVAFTVTWPLVYLAST 470

Query: 826 W 826
            
Sbjct: 471 R 471


>gi|213609623|ref|ZP_03369449.1| RND family, multidrug transport protein,acriflavin resistance
           protein F [Salmonella enterica subsp. enterica serovar
           Typhi str. E98-2068]
          Length = 360

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 44/371 (11%), Positives = 99/371 (26%), Gaps = 15/371 (4%)

Query: 92  RQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
                 ITL+F      +    +V   LQ     L  + ++  +         ++++   
Sbjct: 4   SAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSFLMVAGFV 63

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            D   +   + S  +     D I                  +    D + L +   T   
Sbjct: 64  SDNPNTTQDDISDYVASNIKDSISRLNGVGDVQLFGAQ-YAMRIWLDANLLNKYQLTPVD 122

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           +     + N+       G             +  +  +                 +    
Sbjct: 123 VINQLKVQNDQIAAGQLGGTPALPGQQLNASIIAQTRL-------------KDPEEFGKV 169

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
                             I            +     +          +   T       
Sbjct: 170 TLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGIKLATGANALDTATAIKAK 229

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
            A L+         +           S      T      LV +V+++ +   +  L+  
Sbjct: 230 LAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILVFLVMYLFLQNIRATLIPT 289

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFC 450
            ++ + ++ T A+L+  G ++   ++ G+VL IGL VD  I+V E +     ++  S   
Sbjct: 290 IAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDGAIVVVENVERVMMEDNLSPRE 349

Query: 451 SLDMGFSRAYS 461
           + +   S+   
Sbjct: 350 ATEKSMSQIQG 360



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 71/208 (34%), Gaps = 4/208 (1%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +         +  G + L V  +  V      + +E            +G+    + +
Sbjct: 152 ASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYNVVARINGKPASGLGI 211

Query: 622 QYQPGDSVAQTRV-LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +   G +   T   ++    ++    P               +  I + +  +  + I +
Sbjct: 212 KLATGANALDTATAIKAKLAELQPFFPQGMKVVYPYDTTPFVKISIHEVVKTLFEAIILV 271

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +++  +     L     + + +  T    A FG   N   +  ++  IG  V+  +V
Sbjct: 272 FLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINTLTMFGMVLAIGLLVDGAIV 331

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINE 767
           V + +     +   ++S R+  +KS+++
Sbjct: 332 VVENV--ERVMMEDNLSPREATEKSMSQ 357


>gi|326317916|ref|YP_004235588.1| acriflavin resistance protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374752|gb|ADX47021.1| acriflavin resistance protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 1102

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/722 (11%), Positives = 190/722 (26%), Gaps = 67/722 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL+      L       +P+                   +     
Sbjct: 10  RPVATALLMLAIVLAGLVGFRFLPLSALPQVDYPTIQ--------------VQTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + ++  +    +     +        +     + +TL F      +    +V   +   
Sbjct: 56  PEVMSRNVTAPLERQFGQMPGLARMASTSAAGVSIVTLQFDLGLAIDIAEQEVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S L  D     +        + VL+   I        E    +  +   +I   +    
Sbjct: 116 SSLLPTDLPAPPVYAKVNPADAPVLT-LAISSDTMPLTEVQNLVNTRLAQKISQVQGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + D   L         +       N +     F       +      
Sbjct: 175 VTLAGGQRPAVRIQADTKALASYGIGLDTLRTAISAANANSAKGSFDGPQRAYTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +   + ++              V    +      +  V         A    G  
Sbjct: 235 LLTVDDYKRLIVSWKNGAPVRMVDVARVVNGAENDRLGAWAGVRAAPGRPRQAEAPPGGS 294

Query: 303 LTAP-------------------------------------VINQAIPSGKAQISGNFTI 325
                                                             +   +   T+
Sbjct: 295 EPGEAGSVGATEPPPGRPKAASAPPGGSEPGEAGSVGATLTPAIILNVQRQPGANVISTV 354

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           ++       L+AG        V          S    +    +   +V++V+F  +   +
Sbjct: 355 DSIQRQLPELQAGLPAGLDVQVLSDRTTGIRASVHHVEMELVLAVLMVVLVIFFFLHSLR 414

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             ++A  ++ +++I T  ++ LLG +L   S+  + +  G  VD  I++ E I     + 
Sbjct: 415 ATVIASLAVPISLIGTCGVMYLLGYSLNNLSLMALTIATGFVVDDAIVMIENIARYIEEG 474

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
           +  F +   G ++   TI    ++ +   + L F     G   R FA+T+ L+ILIS   
Sbjct: 475 EPPFQAALKGATQIGFTIISLTVSLIAVLIPLLFMSDVVGRLFREFAVTLALTILISAVV 534

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           ++++V  M            +   P +    +   I   F R                  
Sbjct: 535 SLTLVPMMSARW--------LRAVPDTPPRGLGGAIQRGFDRVIARYDVWLQWVLRRQGA 586

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            L    L   +     I +        D   ++  L + Q       +   ++     LQ
Sbjct: 587 TLVVALLTLALTVVLYIFIPKGLFPTQDTGQLQGRLVAAQDVSFERMSGLQQEAVRAILQ 646

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                S++    ++     +     L           ++    +R  +  V      + +
Sbjct: 647 DPDVASLSSFVGVDGANNAMLNTGSLLINLKEGRDSQEVVMRRLRDRVNAV----AGVTL 702

Query: 683 YI 684
           Y+
Sbjct: 703 YL 704



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 51/136 (37%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           +        + A   + + +  T G   L G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 408 FFLHSLRATVIASLAVPISLIGTCGVMYLLGYSLNNLSLMALTIATGFVVDDAIVMIENI 467

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +             K   +     +  +++    ++P+       G +   FA+ +
Sbjct: 468 ---ARYIEEGEPPFQAALKGATQIGFTIISLTVSLIAVLIPLLFMSDVVGRLFREFAVTL 524

Query: 802 AFGIVVAASSSIFIAA 817
           A  I+++A  S+ +  
Sbjct: 525 ALTILISAVVSLTLVP 540


>gi|254704380|ref|ZP_05166208.1| acriflavin resistance protein [Brucella suis bv. 3 str. 686]
 gi|261755054|ref|ZP_05998763.1| acriflavin resistance protein [Brucella suis bv. 3 str. 686]
 gi|261744807|gb|EEY32733.1| acriflavin resistance protein [Brucella suis bv. 3 str. 686]
          Length = 1029

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 161/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +   +       
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAVESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 AFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFIG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFIGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|220934782|ref|YP_002513681.1| acriflavin resistance protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996092|gb|ACL72694.1| acriflavin resistance protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1028

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 70/685 (10%), Positives = 185/685 (27%), Gaps = 52/685 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA----MPKNRISLGLDLRGGSHLV 57
           +      ++   I  +G+            + +FP      +      +G D        
Sbjct: 9   KKPVLATVVSLFILLLGIRAGF-----DLNVRQFPEIKNAVVTVTTAYIGAD-------- 55

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 D + GF+    +   +  +     V +     + +  +            ++  
Sbjct: 56  -----ADLIQGFITTPIEREIAAAEGIDYIVSTSVAGVSLVQANLRLDYDPNEALTQIAA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L ++ ++ ++  +  + I+ +      + + ++  + +  ++R    Q+   
Sbjct: 111 QVNKVRSDLPLEAEEPVIELSVGQTIAAMYMSFYSELLSNN--QITDYLVRVVQPQLSTI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +          +    DP R+  L  T A ++      N            +    
Sbjct: 169 PGVQRAQILGDRTFAMRIWLDPERMAALNVTGADVAAALRANNVLSAVGRTKGEMVSIDL 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    E                       +            V    +       
Sbjct: 229 KASTDLSSAEEFE--------------------QLVVRAEEGAIVRIVDIAEVELGSENY 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA-AMLRAGSLPIKLNIVEERNVGADL 356
                                 +    I     +    +           +   +     
Sbjct: 269 DVSVSFNGQSATFIGIEVAPDANALDVIAEVRRVWAEQIEPQFPQGLSGDIVYDSTLYIQ 328

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T  +   +V+ V+++ +   +  ++   ++ L+++ TL L+ L+G ++ L +
Sbjct: 329 SAIDEVLLTIFLALVIVVGVIYLFLGSVRSVIIPALAVPLSLVGTLFLMLLMGFSINLLT 388

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  +VL IG+ VD  I++ E I     +  +   +   G       I   + T +   + 
Sbjct: 389 LLAMVLAIGIVVDDAIIMVENIHRHIEEGMAPLEAAMRGARELAWPIVAMSTTLVAVFLP 448

Query: 477 LFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F GG        FA T+  S++IS   A+++   +   +++     S           
Sbjct: 449 IGFVGGITGTLFIEFAFTLAASVIISGIVALTLSPMLSSRLLKAHGEGSKGRLEAWLDAR 508

Query: 534 IPDCIAIQFMRAR----FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                     R         V +S    +   C          ++               
Sbjct: 509 FDGLRRRYQRRLHGALDDKHVVLSFGLIVLVSCYFLFITSPSELEPAEDQGFVFSIAEAD 568

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             + +     +  + +         +N  +   +      A    +        +    S
Sbjct: 569 APTTLDHLERNTAVMNRYLDEIPEMRNIFIVNGFGGAGVGATNTAIAGFVLAPWDQRERS 628

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
           T Q  E        ++    I  ++
Sbjct: 629 TQQVLEQDLQPRIEQIPGLNIFALV 653



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/249 (14%), Positives = 88/249 (35%), Gaps = 10/249 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             QL V A     + +V      L   +         ++          D+ A   + E+
Sbjct: 240 FEQLVVRAEEGAIVRIVDIAEVELGSENYDVSVSFNGQSATFIGIEVAPDANALDVIAEV 299

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYI-WIRFKWYFA 693
            +    +I P      +  +    +  +   I + ++ + ++ + ++  I          
Sbjct: 300 RRVWAEQIEPQFPQGLSGDIVYDSTLYIQSAIDEVLLTIFLALVIVVGVIYLFLGSVRSV 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +     + L +  TL    L G   NL  + A++  IG  V+D +++ + +    +    
Sbjct: 360 IIPALAVPLSLVGTLFLMLLMGFSINLLTLLAMVLAIGIVVDDAIIMVENIH---RHIEE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
            ++  +   +   E     V  S       LP+   G   G++   FA  +A  ++++  
Sbjct: 417 GMAPLEAAMRGARELAWPIVAMSTTLVAVFLPIGFVGGITGTLFIEFAFTLAASVIISGI 476

Query: 811 SSIFIAAPI 819
            ++ ++  +
Sbjct: 477 VALTLSPML 485



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 75/165 (45%), Gaps = 13/165 (7%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I+    + + + + +  +F+ +  +L  + T+ + I   L F +L     N+     ++T
Sbjct: 858  ILTFFFALVVIYLVLAAQFESFRDSLIMMMTVPMSIAGALIFVSLGFATLNIYTQVGLVT 917

Query: 729  LIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            LIG      +++ +   ++R+        +S R+ ++++    L   + T+ A  ++++P
Sbjct: 918  LIGLIAKHGILIVEFANKLREE------GLSKREAVEEAAAIRLRPILMTTAATVLAMIP 971

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + +    G     +  + +A G+ +    ++F+   + +++   R
Sbjct: 972  LLIAAGPGAGARFAMGLVIASGMTIGTLFTLFVVPAMYVYLSRDR 1016


>gi|29654087|ref|NP_819779.1| AcrB/AcrD/AcrF family transporter [Coxiella burnetii RSA 493]
 gi|29541353|gb|AAO90293.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           RSA 493]
          Length = 1022

 Score =  143 bits (359), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/551 (11%), Positives = 145/551 (26%), Gaps = 31/551 (5%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    +E  S ++     +    Q ++ I L+         +A+++   ++
Sbjct: 54  ASAKLVESSITTPLEEGISGVQGIDTIISQSFQGESDIKLTLDYGVNVYEVANQIRDKVE 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  +    ++         + L          +       + R  IDQI      
Sbjct: 114 QARVQLPTNINAPVVQVGWGN---MELMDVGFTAPNENPKAIRDYLERNVIDQIEQIPGI 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      +    DP ++     +   +       N                    
Sbjct: 171 ADVEVAGANQYAMRIWLDPQKMAARGLSVNDVQMAIQNSNVELPAGEIKG---------- 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    S I+             +    I  ++ G     +          +     
Sbjct: 221 ---------SSINYPITAETKLNTADQFNNIIVKNDNGQVIRIKDIGQAQLDDDSADQSI 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L          +     +     +        +R         +          GS  
Sbjct: 272 VTLDGQPGVLLSINNATDANPLDAAKNVNHFLNQIRPHLPNGMKIVPSFDISAYMHGSIH 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  I    V++V+F+ +   +   +   +I + +I +   + LLG ++ + ++  +
Sbjct: 332 EVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYLLGFSINVITLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I++ E I       +    +   G       +    IT       +   
Sbjct: 392 VLSIGLVVDDAIVMLENIYRHIENGEKPLIAAIKGSKEITFPVIAMTITLAAVYAPIGLM 451

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
                   R FA T+  ++LIS F A+S+   M                + I+       
Sbjct: 452 QNQAANIFRSFAFTLAGAVLISGFVALSLSPMMCSRFLKAQGGEPKGYSRIIETIYERMA 511

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +A    +         ++                  +  G +   V  +    +
Sbjct: 512 QGYQKILAAILNKRILVVFAAVLIAVGGFFLAKNIPMAFVPQEDMGFVIAAVSTSSGSSI 571

Query: 592 SVVRSNLESLQ 602
           + +   LE + 
Sbjct: 572 NTINRGLEQVA 582



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 78/227 (34%), Gaps = 7/227 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++ L+                  L        + +   + +     +I   +P       
Sbjct: 259 QAQLDDDSADQSIVTLDGQPGVLLSINNATDANPLDAAKNVNHFLNQIRPHLPNGMKIVP 318

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                      I +  + + I+ + +++ I++   +       I T+ + +  + G   L
Sbjct: 319 SFDISAYMHGSIHEVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   N+  + A++  IG  V+D +V+ + + ++++           I  S   T     
Sbjct: 379 LGFSINVITLLALVLSIGLVVDDAIVMLENIYRHIENGEK--PLIAAIKGSKEITFPVIA 436

Query: 774 YTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAA 817
            T +       P+ +       +  SFA  +A  ++++   ++ ++ 
Sbjct: 437 MT-ITLAAVYAPIGLMQNQAANIFRSFAFTLAGAVLISGFVALSLSP 482



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 49/416 (11%), Positives = 102/416 (24%), Gaps = 11/416 (2%)

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G V       +      +   L    ++   A  V  +    D+N    + +    +  
Sbjct: 556 MGFVIAAVSTSSGSSINTINRGLEQVASIFKQAPAVASVVTVADTNAKAFDSVFAMLKPF 615

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI----LISMF 501
           +    S           I         A    F         F +          +    
Sbjct: 616 KDRKQSASQVADVINQKIKQIPGLNAAAFAPSFGGSMQHQLEFYLMGDTYSDLYAVSQKL 675

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
                    +  I    +  S   N      +     A                      
Sbjct: 676 INQLGNYPGLRVIQSNMRFDSQQYNMTVNRDIAGQLQANIKDIDNTMAALYGGSKISTFD 735

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR-SNLESLQIGDISFQNFDGEKNFLVR 620
               T+ +           L  +    V+ +  +   L +L                 +R
Sbjct: 736 ANGKTYNVYLQAQENDLHSLASINKFYVNNAQNKLIPLSNLISIKPILSQVVLPHYNHLR 795

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                        +  +V    TE+  L           +    L     +G+I     +
Sbjct: 796 AAQMSAQLAPGYNLGTVVNYLQTELPQLLPANVKYAFTGQAHDLLTSNNSMGLIFLLAMV 855

Query: 681 LIYIWIRFKWYF---ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            IY+ +  ++         +  + L I   +    L G   N+     ++TLIG      
Sbjct: 856 FIYLVLAAQFESFIDPFIILLAVPLSIVGAMASLKLIGGTLNIYTDIGLVTLIGLVSKHG 915

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +++        +L    ++ R+ + K+ +  L   + T+ A     LP+    G  
Sbjct: 916 ILITQFAN---RLQKEGLAMREALLKAASIRLRPILMTTAAMVFGALPLLFSSGGS 968


>gi|242372395|ref|ZP_04817969.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus epidermidis M23864:W1]
 gi|242349914|gb|EES41515.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus epidermidis M23864:W1]
          Length = 918

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 85/629 (13%), Positives = 194/629 (30%), Gaps = 58/629 (9%)

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
           H +   A+     H    +   D+   +   +           V        +  IN   
Sbjct: 64  HQDSQKASMKIVFHSDKKNGITDKDTKKDIEKALDHIKQDDDYVQNVSNPYESHQINDDK 123

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            +  A ++           +       L         +      GS +   G  + + G+
Sbjct: 124 DTAIATVNYVVNQTALQDSSKKTIDKELDDVKADHNLQIEQTQGGSMNSEVGGTSEIVGI 183

Query: 373 V--LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLA 427
           V   I+L +         +   S  + +  ++ ++SLL     +P+      +++G+ + 
Sbjct: 184 VTAFIILLITFGSLIAAGMPIVSAIIGLSSSVGIISLLTFVFDIPNFTLTLAVMIGLAVG 243

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           +D ++ +  R +E  ++      +       A S +  + +T +IA   L   G   +  
Sbjct: 244 IDYSLFILFRYKEVRKRGLEPIEAFATAVGTAGSAVIFAGVTVMIAVCGLSLVGIDFLAI 303

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
                 +S+L ++  A++++ A++    +  K+K                  +       
Sbjct: 304 MGFASAISVLFAVLAALTLLPALISVFHKRIKIKDKPEKSKDPKDHPWAKFVVGKPVIAI 363

Query: 548 WGVGISILFSICSICLL--------------------FTHGLNYGIDFKGGIQLGVLANR 587
               + ++ +   I  +                         N+G  + G I + V    
Sbjct: 364 VISLLILIAAALPISGMRLGIPDDSLKANNTSAHKAYNLITDNFGAGYNGQIVMLVNTKD 423

Query: 588 -------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                    DL+ ++ +++ +   D        +      +   P D         +V  
Sbjct: 424 GGSKKDIQQDLNNIKDDIKDMDNVDKVATPQLNDNQHYALISVIPEDGPNAQSTNHLVYD 483

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG--------IVGVIISAIAMLIYIWIRFKWYF 692
                       +        S   I           +   +I  +A ++ +++      
Sbjct: 484 LRDYNKTAKEKYDFNTEISGQSVINIDMSEKLNEAIPVFAGVIVLLAFVLLVFVFRSILV 543

Query: 693 ALGAITTLILDITKTLGFF----------ALFGIEFNLT-----AVAAVLTLIGYSVNDK 737
            L A+   +L +  TLGF            LFG+E          V  +  L G +++ +
Sbjct: 544 PLKAVLGFVLSLLATLGFTTLVMQDGFLGGLFGVENTGPLLAFLPVITIGLLFGLAIDYE 603

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           + +  R+ +    Y+ +      I   I E+    V  ++  F   +       S I S 
Sbjct: 604 LFLMTRVHEE---YSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFVFQEDSAIKSM 660

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I +AFG++  A        P L  ++  
Sbjct: 661 GISLAFGVLFDAFIVRMTLIPALTKLFGK 689


>gi|153009503|ref|YP_001370718.1| acriflavin resistance protein [Ochrobactrum anthropi ATCC 49188]
 gi|151561391|gb|ABS14889.1| acriflavin resistance protein [Ochrobactrum anthropi ATCC 49188]
          Length = 1029

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/543 (12%), Positives = 147/543 (27%), Gaps = 39/543 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVALMIILLGL-----QGIAQLTVREYPKVDETVIT---------VTTNYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGANPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGDLPDESDDPVIVKGTGQNFATMY--LAAQNPNMTSEQITEYLERVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLAAINASNFLSAPGTTKNEYVSSSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +     G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKASGDDVVRLRDVARVELAAKSTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S   
Sbjct: 273 SFNGSAGTFLGVFPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSIKE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L  LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYALGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLRPMDAAFKGMKEITGSIIAMTITLAAVFAPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A+++   M   ++++             F       
Sbjct: 453 GLTGALFREFAFTLAGAVIISGVAALTVSPMMCARMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQ 541
             +
Sbjct: 513 HRR 515



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F    G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYALGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  +  ++       P+   G   G++   FA  +A
Sbjct: 411 ---RHIEEGLRPMDAAFKGMKEITGSIIAMTITLAAVFAPLGFTGGLTGALFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ ++ 
Sbjct: 468 GAVIISGVAALTVSP 482



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 65/161 (40%), Gaps = 6/161 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   ++ I + + +  +F+ +      + ++ L I   +    +     N+     ++T
Sbjct: 849  LIAFGLAVIVIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLIT 908

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G      +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +
Sbjct: 909  LVGLITKHGILMVE--FANQQRRLHGLSRRDAIIVAAETRLRPILMTTAAMALGVVPLII 966

Query: 789  WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              G+      S  + +  GIV+    ++F+      FI   
Sbjct: 967  ATGAGAAARYSMGLVIFTGIVIGTIFTLFVVPMFYTFIAKK 1007


>gi|316934231|ref|YP_004109213.1| acriflavin resistance protein [Rhodopseudomonas palustris DX-1]
 gi|315601945|gb|ADU44480.1| acriflavin resistance protein [Rhodopseudomonas palustris DX-1]
          Length = 1044

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 57/518 (11%), Positives = 136/518 (26%), Gaps = 42/518 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      +L   +   GLL           +   P                   +   L 
Sbjct: 9   RRPIATSLLGVALMIGGLL-----GYIALPVSALPQVDFPT-----------VQVTTQLP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D V   +    +     +        +     ++++L F  +R  +     V   +
Sbjct: 53  GASPDVVASLITAPLERQLGQIPSLTAMTSTSSFGVSQVSLQFDLNRDIDGATQDVQAAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  +     +        + V++   +          S         ++     
Sbjct: 113 NAAAGILPKNLPYPPVYAKVNPADAPVMT-LALTSTTVSLRNMSDLADTLLAQRLAQISG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +      +   +  + D +RL     +   +       N S             +   
Sbjct: 172 VGRVSVLGGLKPAVRVQADLARLAAYGISMEDLRTAIANANVSGPKGSLDGAQQAYTIAA 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +                            I                 I   L     
Sbjct: 232 NDQIAVAA--------------------AYRPIIVAYRNGAPVTIGDVAQIVDGLENERT 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G               +   +    ++        ++          V          S 
Sbjct: 272 GAWYQGAPAVILDIQRQPGANVIDVVKGIRAEIPRIQRLVPAGVKLTVVSDRTETIRASV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  + T  +   LV +V+ + +   +  ++A  ++ L++I +  ++   G +L   S+  
Sbjct: 332 NDVQFTLVLAVILVTLVVLLFLRSMRATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + +G G  VD  I++ E I       +S   +   G S    T+    ++ +   + L F
Sbjct: 392 LTIGTGFVVDDAIVMIENIVRHMEDGESPMQAALNGASEIGFTVISLTLSLIAVFIPLLF 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                G   R FA+T+ ++++ S   ++++   M   +
Sbjct: 452 MSGLVGRMFREFALTLTIAVVTSAIVSLTLTPMMCSRL 489



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSMRATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      S         +E     +  +++     +P+    G V      FA+ +   
Sbjct: 411 VRHMEDGESPMQAALNGASEIGFTVISLTLSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAA 817
           +V +A  S+ +  
Sbjct: 471 VVTSAIVSLTLTP 483



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 73/225 (32%), Gaps = 6/225 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                  V  S +  L+            +   V + +      +    +  +K     I
Sbjct: 774 PGNAGAQVPISAVAELKRTIAPLAISHQAQFPSVAMSFNLAPDASLGEAVNEIKAIEKRI 833

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD-- 703
               +I            + +      ++ + +A+ I + + ++ Y     I + +    
Sbjct: 834 GMPGSIVGVFYGDAAEFSKALDGQPWLILAAIVAIYIVLGVLYESYIHPITILSTLPSAG 893

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   L    LFG + ++  +  ++ L+G    + +++ D            +S  + I +
Sbjct: 894 VGAILALM-LFGQDLSVIGLIGIILLMGIVKKNAILMIDFALD--AEREQGMSSYEAIVQ 950

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +        + T++AA    LP+AV           P+   I+  
Sbjct: 951 ACRLRFRPIMMTTLAALFGALPLAV-ESGTGSELRFPLGISIIGG 994


>gi|222102781|ref|YP_002539820.1| Acr family transporter [Agrobacterium vitis S4]
 gi|221739382|gb|ACM40115.1| Acr family transporter [Agrobacterium vitis S4]
          Length = 1027

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/679 (12%), Positives = 199/679 (29%), Gaps = 46/679 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEV 60
           RN    ++L++++   GL+        +  + +FP   +P  +IS  LD           
Sbjct: 9   RNPVPAILLFALMTVCGLIA-----FEKLKIQQFPDMDLPTIKISATLD----------G 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    ++  + L K      ++      I++SF+  +  E   ++V   + 
Sbjct: 54  TAPSQLETEVARKIEDKLATLNKLDHITTTITDGSVSISVSFSLEKDGEQALNEVRNAVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    +   +   T +   +        ++     E S  +       +  ++  
Sbjct: 114 SVT-DLPSAMQTPSVSRVTVQSSVLQTYAVRSSKLNE--TELSWFVDNDMTKALLKAQGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      +  ++  + +P  L     T A +S    L   +  G               
Sbjct: 171 GEVDRFGGVDREIHVDINPDLLTSFGVTAADVSSQLKLVQENASG--------------- 215

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                + +++G+H    T                   G     +                
Sbjct: 216 ----GRGDLNGLHQTVRTLGAVNSVKDIAALSIPFSNGKSVRLDQIAKVTDSFSERSSLA 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +   PVI   +             +   ++AA            +     V   + +  
Sbjct: 272 YMGQTPVIAVEVKRSNGYSDTGVATDLTRVMAAFAAEHPE--VEIVQAYTTVQPTIDNYE 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L ++V+F+ +   +  L++  ++ L++I T  ++ L   +L   S+  I
Sbjct: 330 ASMHMLYEGAALAIVVVFLFLRDLRATLLSAVALPLSIIPTFLVIYLANFSLNTISLLSI 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+  E I    R  +  F +           +  +  T +   +   F 
Sbjct: 390 SLVVGILVDDAIVEVENIERHLRMGKKPFDAAMEAADEIGLAVIATTFTLVAVFLPTAFM 449

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      + F +T  +++L S+  A  +   M  ++++      +D   +  +  I   
Sbjct: 450 AGIPGLIFKQFGVTAAVAVLASLMVARFLTPMMAAYMMKATPKVEVDGVIMKTYLSIVRA 509

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                       +GI +   +    +       +        Q+ +      +LS   + 
Sbjct: 510 CLRHRF---LTSLGIIVFLVVSLSAVSLLKTGFFPASDNAQTQVTLTMPPGSELSDTEAM 566

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
                      +N       +       G   + T  +      +              +
Sbjct: 567 SLKAVKLISGLENIKRVFTVVGSSTSGGGADSSTTSDVTTATLVVDLTPINDRKLKQSQI 626

Query: 658 GPKISRELIRKGIVGVIIS 676
             ++   L     V V + 
Sbjct: 627 EQQMRNVLQELAGVRVEVG 645



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 86/251 (34%), Gaps = 12/251 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V  ++   ++   S   SL     +       K             + +       +  
Sbjct: 251 SVRLDQIAKVTDSFSERSSLAYMGQTPVIAVEVKRSNGYSDTGVATDLTRVMAAFAAEHP 310

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             EIV   T     I   + S  ++ +G      +   +++++++R      L +   L 
Sbjct: 311 EVEIVQAYTTVQPTIDNYEASMHMLYEG-----AALAIVVVFLFLR-DLRATLLSAVALP 364

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L I  T     L     N  ++ ++  ++G  V+D +V  + + +++++        D  
Sbjct: 365 LSIIPTFLVIYLANFSLNTISLLSISLVVGILVDDAIVEVENIERHLRMGKK---PFDAA 421

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            ++ +E     + T+       LP A      G +   F +  A  ++ +   + F+   
Sbjct: 422 MEAADEIGLAVIATTFTLVAVFLPTAFMAGIPGLIFKQFGVTAAVAVLASLMVARFLTPM 481

Query: 819 ILLFIYDWRAK 829
           +  ++     K
Sbjct: 482 MAAYMMKATPK 492



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 57/150 (38%), Gaps = 8/150 (5%)

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL 720
             EL     + + I    +   + + F  +      +  L L +   L      G  F++
Sbjct: 838 MSELFTSFALAMGIGIFCIYAVLVLLFHDFMQPATILMALPLSLGGALFPLIATGTSFSM 897

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            AV  +L L+G    + +++ +     +      +   + +  + ++     V T++A  
Sbjct: 898 PAVIGLLMLMGIVSKNSILLVE---YAIMARRNGMDRYEALIDACHKRARPIVMTTIAMG 954

Query: 781 ISV--LPMAVWGGSVIGSFAIPMAFGIVVA 808
             +  + +++ GG    SF  PM+  ++  
Sbjct: 955 AGMAPVALSLSGGDT--SFRQPMSIVVIGG 982


>gi|154494231|ref|ZP_02033551.1| hypothetical protein PARMER_03581 [Parabacteroides merdae ATCC
           43184]
 gi|154086093|gb|EDN85138.1| hypothetical protein PARMER_03581 [Parabacteroides merdae ATCC
           43184]
          Length = 1072

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 75/577 (12%), Positives = 157/577 (27%), Gaps = 48/577 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I      I     L    + ++P   P               + ++   
Sbjct: 9   RPVLSTVISILIV-----ILGILGLLSLPITQYPDIAPPT-------------VSVKATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +     N   +I++ F      +  A  V  
Sbjct: 51  TGANAQTVLNSVIAPLEDQINGVENMMYMTSSASNNGSAEISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  +  + T   +   +++      +                I ++   
Sbjct: 111 RVSMAQGLLPAEVTQIGVTTQKRQNSMLIVFSVYDAEDRYDQRFIENYAKINLIPEVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q       ++      N       FG    R + 
Sbjct: 171 PGVGDANVLGT-DYSMRIWLKPDVMAQYKLVPNDVAGVLAEQNVEAAPGSFGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +  +    +                +I       
Sbjct: 227 SFQYTIRYKGRL-------------QEVSEFENMVVKALPDGEVLRLKDIADIELGRLTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L         P     V          
Sbjct: 274 NFVNKVNGHSAVTCIVYQMAGTNATETINNIQNLLEETEKILPPGLKIDVGMNANDFLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPAIAIPVALIGTFFMLSLIGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIA 473
             +VL I + VD  I+V E +  +  +   S   +     +    A  +I    ++  I 
Sbjct: 394 CAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSAKLASIDAMNELGGAIVSITLVMMSVFIP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----KKMKSIDINPLS 529
              +    G   R F +TM +SI +S   A+++  A+    ++      + KS  ++   
Sbjct: 454 VSFMSGTAGTFYRQFGLTMAISIGLSALNALTLSPALCAMFLKPHEEGHEKKSTFVSRFH 513

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
             F       +   + R          S   +     
Sbjct: 514 SSFNAAYDSLLNSYKKRVVFFIQKKWLSFGIVAGCIV 550



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/421 (12%), Positives = 110/421 (26%), Gaps = 38/421 (9%)

Query: 444  KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
              QS        F RA   + D+    ++        G  A     + M       +   
Sbjct: 638  MMQSSDIVYGSLFMRAQKIVKDAQ---VLFFTPPMIPGYSASSDIELNMQDKTGGDLEKF 694

Query: 504  ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
              + +  M  +    ++KS        F      I     +         +         
Sbjct: 695  FDVTKQYMAALTARPEIKSAQSTFNPNFPQYMIDIDAAACKKVGISPSDILATMQGYYGG 754

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-------- 615
            L+    N        + +        +L  +++              F   K        
Sbjct: 755  LYASNFNR-FGKMYRVMVQADPALRTNLESLKNIKVRNGNEMAPISQFVSIKKVYGPDII 813

Query: 616  ---NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
               N    ++     +   T    +   +      L T    E+ G             G
Sbjct: 814  SRFNMYTSIKVMVAPADGYTSGQALKAIEEVAGTTLPTGFGYELGGMAREEAETSGSTTG 873

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALFGIEFNLTAV-- 723
            +I     + +Y+ +      +   L  + +    L+       G+ AL  I      +  
Sbjct: 874  LIFLLCFVFVYLLLSAQYESYILPLAVLLSIPFGLMGSFLFVQGWAALGNIPALKMILGT 933

Query: 724  --------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
                     A++ L+G    + +++ +     +      +S            L   + T
Sbjct: 934  MSNNIYMQIALIMLVGLLAKNAILIVEFA---LDRRRMGMSITWAAVLGAAARLRPILMT 990

Query: 776  SMAAFISVLPM-AVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S+A  + +LPM   +G       +       G+ +     IFI   + +     + K   
Sbjct: 991  SLAMVVGLLPMMFAFGVGAHGNRTLGTAAIGGMFIGMIFQIFIVPVLFVVFQYLQEKFKP 1050

Query: 833  I 833
            I
Sbjct: 1051 I 1051



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 75/207 (36%), Gaps = 8/207 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                       +LE  +K +   + +    N          E+++  I   I+  I + 
Sbjct: 295 TNATETINNIQNLLEETEKILPPGLKIDVGMNANDFLYASIHEVLKTLIEAFILVFIVVY 354

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++         L     + + +  T    +L G   NL  + A++  I   V+D +VV 
Sbjct: 355 IFLQ---DLRSTLIPAIAIPVALIGTFFMLSLIGFSLNLLTLCAMVLAIAIVVDDAIVVV 411

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFA 798
           + +   +     S     +   ++NE  G  V  ++      +P++   G+       F 
Sbjct: 412 EGVHAKLDQGYKSAKLASI--DAMNELGGAIVSITLVMMSVFIPVSFMSGTAGTFYRQFG 469

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYD 825
           + MA  I ++A +++ ++  +      
Sbjct: 470 LTMAISIGLSALNALTLSPALCAMFLK 496


>gi|161831217|ref|YP_001596935.1| RND efflux transporter [Coxiella burnetii RSA 331]
 gi|161763084|gb|ABX78726.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii RSA 331]
          Length = 1022

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/551 (11%), Positives = 145/551 (26%), Gaps = 31/551 (5%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    +E  S ++     +    Q ++ I L+         +A+++   ++
Sbjct: 54  ASAKLVESSITTPLEEGISGVQGIDTIISQSFQGESDIKLTLDYGVNVYEVANQIRDKVE 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  +    ++         + L          +       + R  IDQI      
Sbjct: 114 QARVQLPTNINAPVVQVGWGN---MELMDVGFTAPNENPKAIRDYLERNVIDQIEQIPGI 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      +    DP ++     +   +       N                    
Sbjct: 171 ADVEVAGANQYAMRIWLDPQKMAARGLSVNDVQMAIQNSNVELPAGEIKG---------- 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    S I+             +    I  ++ G     +          +     
Sbjct: 221 ---------SSINYPITAETKLNTADQFNNIIVKNDNGQVIRIKDIGQAQLDDDSADQSI 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L          +     +     +        +R         +          GS  
Sbjct: 272 VTLDGQPGVLLSINNATDANPLDAAKNVNHFLNQIRPHLPNGMKIVPSFDISAYMHGSIH 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  I    V++V+F+ +   +   +   +I + +I +   + LLG ++ + ++  +
Sbjct: 332 EVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYLLGFSINVITLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I++ E I       +    +   G       +    IT       +   
Sbjct: 392 VLSIGLVVDDAIVMLENIYRHIENGEKPLIAAIKGSKEITFPVIAMTITLAAVYAPIGLM 451

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRF 531
                   R FA T+  ++LIS F A+S+   M                + I+       
Sbjct: 452 QNQAANIFRSFAFTLAGAVLISGFVALSLSPMMCSRFLKAQGGEPKGYSRIIETIYERMA 511

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +A    +         ++                  +  G +   V  +    +
Sbjct: 512 QGYQKILAAILNKRILVVFAAVLIAVGGFFLAKNIPMAFVPQEDMGFVIAAVSTSSGSSI 571

Query: 592 SVVRSNLESLQ 602
           + +   LE + 
Sbjct: 572 NTINRGLEQVA 582



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 78/227 (34%), Gaps = 7/227 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++ L+                  L        + +   + +     +I   +P       
Sbjct: 259 QAQLDDDSADQSIVTLDGQPGVLLSINNATDANPLDAAKNVNHFLNQIRPHLPNGMKIVP 318

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                      I +  + + I+ + +++ I++   +       I T+ + +  + G   L
Sbjct: 319 SFDISAYMHGSIHEVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   N+  + A++  IG  V+D +V+ + + ++++           I  S   T     
Sbjct: 379 LGFSINVITLLALVLSIGLVVDDAIVMLENIYRHIENGEK--PLIAAIKGSKEITFPVIA 436

Query: 774 YTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAA 817
            T +       P+ +       +  SFA  +A  ++++   ++ ++ 
Sbjct: 437 MT-ITLAAVYAPIGLMQNQAANIFRSFAFTLAGAVLISGFVALSLSP 482



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/416 (11%), Positives = 103/416 (24%), Gaps = 11/416 (2%)

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G V       +      +   L    ++   A  V  +    D+N    + +    +  
Sbjct: 556 MGFVIAAVSTSSGSSINTINRGLEQVASIFKQAPAVASVVTVADTNAKAFDSVFAMLKPF 615

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI----LISMF 501
           +    S           I        +A    F         F +          +    
Sbjct: 616 KDRKQSASQVADVINQKIKQIPGLNAVAFAPSFGGSMQHQLEFYLMGDTYSDLYAVSQKL 675

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
                    +  I    +  S   N      +     A                      
Sbjct: 676 INQLGNYPGLRVIQSNMRFDSQQYNMTVNRDIAGQLQANIKDIDNTMAALYGGSKISTFD 735

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR-SNLESLQIGDISFQNFDGEKNFLVR 620
               T+ +           L  +    V+ +  +   L +L                 +R
Sbjct: 736 ANGKTYNVYLQAQENDLHSLASINKFYVNNAQNKLIPLSNLISIKPILSQVVLPHYNHLR 795

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                        +  +V    TE+  L           +    L     +G+I     +
Sbjct: 796 AAQMSAQLAPGYNLGTVVNYLQTELPQLLPANVKYAFTGQAHDLLTSNNSMGLIFLLAMV 855

Query: 681 LIYIWIRFKWYF---ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            IY+ +  ++         +  + L I   +    L G   N+     ++TLIG      
Sbjct: 856 FIYLVLAAQFESFIDPFIILLAVPLSIVGAMASLKLIGGTLNIYTDIGLVTLIGLVSKHG 915

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +++        +L    ++ R+ + K+ +  L   + T+ A     LP+    G  
Sbjct: 916 ILITQFAN---RLQKEGLAMREALLKAASIRLRPILMTTAAMVFGALPLLFSSGGS 968


>gi|330993883|ref|ZP_08317815.1| Multidrug resistance protein mdtB [Gluconacetobacter sp. SXCC-1]
 gi|329759151|gb|EGG75663.1| Multidrug resistance protein mdtB [Gluconacetobacter sp. SXCC-1]
          Length = 1058

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/495 (11%), Positives = 133/495 (26%), Gaps = 24/495 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                     D +   +    +     +              + ITL F  +   +    
Sbjct: 47  VQTFYPGASPDVMATSVTAPLETQLGEMSGLEQMTSRSSGGASVITLRFGLTMTMDIAEQ 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +   NS L  D     +        + V++   I        E    +  +  ++
Sbjct: 107 EVQAAINQANSLLPTDLPAPPVYAKVNPADTPVMT-LGISSKTMPLTEVEDYVDTRLAEK 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I           S      L    +  +L         +       N +     F     
Sbjct: 166 ISQISGVGLVTLSGGNRKALRVRVNIPKLTSFGIDLDTLRTTIGNVNVNSPTGTFDGPQR 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +      +    ++    +                                  ++   
Sbjct: 226 ATTLRIDGQISGVDQLLNQVIA--------------------YQNNGPVRIRDVASVVIG 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                                 +   +    ++        L+    P            
Sbjct: 266 PENTELAAWANRTPALVMNVQRQPGANVIAVVDNIKYALPRLQQSLPPGITITPLTDRTT 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    +    +   LV+ V+F+ +      L+   S+ L+++ TLA++ L G +L 
Sbjct: 326 TIRASVEDVEFELGLALVLVVGVIFVFLRNVPATLIPSLSVPLSLVGTLAVMYLFGFSLD 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I++ E I        +   +   G      TI    ++ +  
Sbjct: 386 NLSLMSLTIATGFVVDDAIVMIENIARYIEMGDTRMEAALKGAGEIGFTIISLTVSLIAV 445

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G     FA+T+ ++I++S   ++++V  M   ++  +  K  +    + 
Sbjct: 446 LIPLLFMGDVVGRLFHEFAMTLAVTIILSAVVSLTLVPMMCARLLHERDTKHAEPAWSAT 505

Query: 531 FFLIPDCIAIQFMRA 545
                      + RA
Sbjct: 506 VERWTVATIEGYGRA 520



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 94/258 (36%), Gaps = 11/258 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+A +      +R     +   + +       +   + +  Q         V++ +K  
Sbjct: 244 QVIAYQNNGPVRIRDVASVVIGPENTELAAWANRTPALVMNVQRQPGANVIAVVDNIKYA 303

Query: 642 ITEIVPLSTIQNTEIVGPKISRELI---RKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
           +  +        T       +  +          + ++ + ++  I++  +     L   
Sbjct: 304 LPRLQQSLPPGITITPLTDRTTTIRASVEDVEFELGLALVLVVGVIFVFLRNVPATLIPS 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ L +  TL    LFG   +  ++ ++    G+ V+D +V+ + +    +      + 
Sbjct: 364 LSVPLSLVGTLAVMYLFGFSLDNLSLMSLTIATGFVVDDAIVMIENI---ARYIEMGDTR 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
            +   K   E     +  +++    ++P+   G   G +   FA+ +A  I+++A  S+ 
Sbjct: 421 MEAALKGAGEIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAMTLAVTIILSAVVSLT 480

Query: 815 IAAPI-LLFIYDWRAKNA 831
           +   +    +++   K+A
Sbjct: 481 LVPMMCARLLHERDTKHA 498


>gi|255535457|ref|YP_003095828.1| acriflavin resistance protein [Flavobacteriaceae bacterium 3519-10]
 gi|255341653|gb|ACU07766.1| acriflavin resistance protein [Flavobacteriaceae bacterium 3519-10]
          Length = 1051

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/523 (10%), Positives = 150/523 (28%), Gaps = 39/523 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++ +++   G+         Q   +  P    K               +    
Sbjct: 9   KRPSVVIVMLALLIIGGIFS-----YTQLNYELIPKFEVKVVT---------VSTIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S L+          +  + + + F +    +   ++    +  
Sbjct: 55  SPSEVESTVSRKVEDAISSLEGIKKIQSKSYESLSVVIIQFNNDADVDFALNEAQRKINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L  D ++  L   +  +  I+      +   S   +    I ++   +    +   
Sbjct: 115 IRSELPEDIEEPSLSQFSISDAPIISMGVTANLTQSELYDL---IDQKIQPEFSRIQGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D ++L     T  ++       N          R          
Sbjct: 172 QVNIVGGQEREIRVNLDQNKLEGYGLTIPQVQQIISTSNLDFPTGSLKTRQNSTLLRLSG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   E+                     +++   +  +         +           
Sbjct: 232 KIQTVDEL--------------------RNLTISSVNGQNIKLSDVAEVQDTQKETDKIA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSDS 360
            +            +   +     E        ++           +        L + +
Sbjct: 272 RIDQQSTILLQVQKQTDANAVEVSELVRQKVEQMQLQYKAENLNVNIANDTSLFTLEAAN 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I  GLV  V+   +   +  L+   +I  +++ T   LSLL  +L L S+ G+
Sbjct: 332 SVIKDLFIAVGLVAFVMLFFLHSFRNALIVMVAIPTSLVATFIGLSLLDYSLNLMSLLGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I       ++   +   G S    T+    +  ++  + +   
Sbjct: 392 SLVVGILVDDAIVVIENIHRHMEMGKNKVRAAYDGASEIGFTVTAITLVIVVVFLPIAIS 451

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            G  V        ++++I+   ++ +   ++ ++        +
Sbjct: 452 SG-LVSDIIRQFCVTVIIATMLSLVVSFTVVPWLYSRYGKLDL 493



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 88/242 (36%), Gaps = 15/242 (6%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              E       + +    ++   + LQ Q         V E+V++K+ ++      +N  
Sbjct: 256 DVAEVQDTQKETDKIARIDQQSTILLQVQKQTDANAVEVSELVRQKVEQMQLQYKAENLN 315

Query: 656 IVGPKISRELIRKGIVGVI----ISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +     +     +    VI    I+   +  + ++    +  AL  +  +   +  T   
Sbjct: 316 VNIANDTSLFTLEAANSVIKDLFIAVGLVAFVMLFFLHSFRNALIVMVAIPTSLVATFIG 375

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +L     NL ++  +  ++G  V+D +VV + +    +      +         +E   
Sbjct: 376 LSLLDYSLNLMSLLGLSLVVGILVDDAIVVIENIH---RHMEMGKNKVRAAYDGASEIGF 432

Query: 771 RSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                ++   +  LP+A+  G    +I  F +     +++A   S+ ++  ++ ++Y   
Sbjct: 433 TVTAITLVIVVVFLPIAISSGLVSDIIRQFCVT----VIIATMLSLVVSFTVVPWLYSRY 488

Query: 828 AK 829
            K
Sbjct: 489 GK 490



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 71/234 (30%), Gaps = 9/234 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A+         + + +     +  +        +                   +     
Sbjct: 781  NADGMSVQLSQFATITNASGPSLLERYDRSPSVTVQSQVVGKTTGTIAAEWETKMADVKK 840

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLIL 702
                            +    L     V ++ + + + +I + +   +      + ++ L
Sbjct: 841  PAGVSWIWGGNMENQSEGFGTL----GVALLAAIMLVYMIMVVLYNDFVKPFIVLFSIPL 896

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                 L   AL     N+  +  V+ LIG    + +++ D             +  + + 
Sbjct: 897  SFIGALWALALTNQSLNIFTILGVIMLIGLVAKNAILLVDF---TNHRIDKGETIENALI 953

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            ++ +  L   + T++A    +LP+A+  G+        +A  I+    SS+F+ 
Sbjct: 954  QANHARLRPILMTTIAMVFGMLPIALASGAA-AEMNNGLAIVIIGGLLSSLFLT 1006


>gi|325281157|ref|YP_004253699.1| acriflavin resistance protein [Odoribacter splanchnicus DSM 20712]
 gi|324312966|gb|ADY33519.1| acriflavin resistance protein [Odoribacter splanchnicus DSM 20712]
          Length = 1051

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/687 (9%), Positives = 194/687 (28%), Gaps = 54/687 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF---- 65
           + +++  I +++       Q  +D++P   P              +L +           
Sbjct: 12  ISTLMVFIAIMVLGVASYIQLPVDQYPKMDPP-------------YLTVMATYPGANASD 58

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +   +    ++  + +        +       I+L F      +  ++ V   +      
Sbjct: 59  IEENVTKILEDQLNSVDNLKEMTSTSYDNLGVISLEFEWEANLDEASNDVRDAVDKAMQN 118

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
           L  D  +  ++      + I++     DQ      +       + I ++   +     + 
Sbjct: 119 LPDDIDRPTIMRFNTSMMPILIYAVTADQSYPGIDKILD---DKLITRLNRVDGVASVIV 175

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
           +      +  + DP++L     T  ++    +                         V  
Sbjct: 176 AGAPERVVYVDLDPNKLDAYNLTLEQIGNKILAE--------------------NKDVSS 215

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
                G+         +      + +I       +  +      +   +  +   + +  
Sbjct: 216 GNVKMGLMDYALRVEGEFAESDQIKNIVLGTQNNKTIYLHDVAVVRDTIKDITLEQTINR 275

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
                 + + +   +     + A     +            +   N    + S +  + T
Sbjct: 276 GRGGVLMITKQTDANAVAVAKEAKKQLELAMKELPSDINFQIISDNSDFIVKSINNLQET 335

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
               +  V++V+F+ +   +   +   +I +++I+    L   G +L + S++ + + IG
Sbjct: 336 LMYASIFVVLVVFLFLGRWRATFIIALTIPISLIVAFIYLFATGESLNVISLSSLSIAIG 395

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           + VD  I+V E + +   +      +   G +  + ++  + +  +     L       G
Sbjct: 396 MVVDDAIVVLENVTKHIDRGSRPREAAKYGTNEVWLSVIVTTLVTVAVFFPLTLVTGMTG 455

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP------D 536
              +     + +++  S  TAIS+   +   ++R ++  S        F           
Sbjct: 456 ILFKQLGWIVCITVCTSTLTAISLTPMLCSQLMRIQEKTSNSKFSFYNFVSRQLDRLDSG 515

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +           I  + +I       T  +      +       +  +      V  
Sbjct: 516 YERLIRWVLHHKTFVICFMTAIFLGSCSLTRFIKTDFMPQNDQSNMTVYAKMQSGQRVEE 575

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
                   D   +      +              +      +       +    ++  +I
Sbjct: 576 TKRVALQIDSMIRA-----DIPEITIINLSYGSEEEASFASMMNSTGNNILNMRLRTVDI 630

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIY 683
              + S  +I   +  ++ S   +L Y
Sbjct: 631 KDRERSIFVIADQVRSILKSFPDVLQY 657



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 63/159 (39%), Gaps = 11/159 (6%)

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV--LTLIGYSVND 736
            + I +  +F+ +      I  L +    T    AL      L+ VAA+  + L+G    +
Sbjct: 876  VYIVMAAQFESFKMPF--IIMLAIPFAFTGVILALLLTNTTLSIVAALGAIMLVGIVTKN 933

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             +V+ D +     +    I   D I ++    L   + TS+   + ++PMA+    G   
Sbjct: 934  GIVLIDFIN---LMRERGIRLYDAIAQACRSRLRPVLMTSLTTILGMVPMAISAGEGSET 990

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 I +  G+V +   ++ I   +   +    +++ +
Sbjct: 991  WRPMGIAVIGGMVFSTIITMIIVPAVYAAMDKSGSRDKK 1029



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 10/148 (6%)

Query: 689 KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           +W      I  L + I+  + F  LF  G   N+ +++++   IG  V+D +VV + +  
Sbjct: 353 RWRATF--IIALTIPISLIVAFIYLFATGESLNVISLSSLSIAIGMVVDDAIVVLENV-- 408

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
             K        R+      NE     + T++       P+ +     G +       +  
Sbjct: 409 -TKHIDRGSRPREAAKYGTNEVWLSVIVTTLVTVAVFFPLTLVTGMTGILFKQLGWIVCI 467

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  +  ++I +   +   +   + K +
Sbjct: 468 TVCTSTLTAISLTPMLCSQLMRIQEKTS 495


>gi|116071414|ref|ZP_01468683.1| Hydrophobe/amphiphile efflux-1 HAE1 [Synechococcus sp. BL107]
 gi|116066819|gb|EAU72576.1| Hydrophobe/amphiphile efflux-1 HAE1 [Synechococcus sp. BL107]
          Length = 1131

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/513 (13%), Positives = 142/513 (27%), Gaps = 33/513 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
             +GL+       P   ++  P   P                     +   V   +    
Sbjct: 1   MIVGLIAI-----PILPIENLPDIAPPTV---------KVQSTYVGADAVAVEQGVTSVL 46

Query: 75  DELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           ++  + ++K   I   S     + I++SF            V   +     +L  + +K+
Sbjct: 47  EQQINGVEKMDYITSTSSSDGVSSISVSFDSGTDGNINQVNVQNRVSLAEPQLPEEVRKS 106

Query: 134 LLVTTTEKEISIVLSQNNIDQVI---SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
            +         +++     +            S  + +   D +   +            
Sbjct: 107 GVTVNKASNSILLVYNFVNEDPSQTQYSVETISGYLDKNLTDNVKRVKGVGDVTYFGNRK 166

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
           I      DP +L     +   +       N        G     +     + V+ +  ++
Sbjct: 167 IAFRLWLDPDKLVANNLSATDIVNQLKSQNRLVPAGKIGGSPAPEGQEFTFTVQLQGRLT 226

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                              + +     G     +             +D   +       
Sbjct: 227 TTQEFEN------------IVLRSTGDGGLVRLKDVGRVELGGETYGIDAMDINGTPSVG 274

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                 +  +          +                          S      +     
Sbjct: 275 IAIYQLSGSNAIEVSNGVKNVLEEFEKTLPVGLGVQKIYDTTDFISQSIKGVTNSLRDAV 334

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            LV+++LF+ +   K  LV   +I + +I T AL+   G +L   ++ G+VL  GL VD 
Sbjct: 335 ILVVLILFLFLQNWKATLVPAIAIPVALIGTFALVLAFGFSLNQLTLFGLVLATGLVVDD 394

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFFFG--GGAVRG 487
            I V E    +  +  +   +        +   I  S +   +   VLFF G  G   + 
Sbjct: 395 AITVVEDTSAKKAEGLTSVQAAIETMDELFGAVIATSLVKMAVFLPVLFFPGATGTIYKQ 454

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           FA T+  SI IS F A++    +   ++  +  
Sbjct: 455 FAATILFSIGISTFNALTFSPMLSALLLSRETK 487



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T      FG   N   +  ++   G  V+D + V +       
Sbjct: 348 WKATLVPAIAIPVALIGTFALVLAFGFSLNQLTLFGLVLATGLVVDDAITVVE---DTSA 404

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVI-GSFAIPMAFGIV 806
                ++      ++++E  G  + TS+      LP+  + G    I   FA  + F I 
Sbjct: 405 KKAEGLTSVQAAIETMDELFGAVIATSLVKMAVFLPVLFFPGATGTIYKQFAATILFSIG 464

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
           ++  +++  +  +   +     K
Sbjct: 465 ISTFNALTFSPMLSALLLSRETK 487



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 72/214 (33%), Gaps = 9/214 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             L R     G   A     + +          +              E+    +  VI +
Sbjct: 890  NLYRSIKVEGTPNAGNSSGQAIGAMKQIFNQGNFQGLGFDWTGISREEVKAGSLAVVIFA 949

Query: 677  A--IAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +A+ + +  +++ Y   +  + T+   +   L F    G   N+ A   ++ LIG +
Sbjct: 950  LGILAVFLVLSAQYESYSDPIIILLTVPTALLGALVFLGAAGQVLNIYAQVGLVMLIGLA 1009

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ D      +      S  +    S    L   + T++++    LP+ +    G
Sbjct: 1010 GGNAILIVD---LANQKMGEGESALEAAKFSAKSRLRPILMTAISSLTGFLPLMLASGAG 1066

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 S  + +  G++VA   S  +     + + 
Sbjct: 1067 AQSQSSLGLVVFGGLLVATFLSTLVVPVFYVVMK 1100


>gi|308071128|ref|YP_003872733.1| Cation/multidrug efflux pump [Paenibacillus polymyxa E681]
 gi|305860407|gb|ADM72195.1| Cation/multidrug efflux pump [Paenibacillus polymyxa E681]
          Length = 1045

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/548 (10%), Positives = 156/548 (28%), Gaps = 41/548 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + +L   +   G + AL     +  +++ P       +             +   
Sbjct: 7   RRPVTVFMLIIALLIGGGIFAL-----RLPVEQMPDMKLPIAV---------VATSIPNS 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + ++          +  + + + F            +   + G
Sbjct: 53  TPTEVEELVTKPIEKSLASIENVDTIQSESSEGSSMVIIQFNWGVDINQATLDMRDKIDG 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L        ++        ++      DQ  +     + +II     ++       
Sbjct: 113 VRGSLPKAANSPRVLKLDLNATPVITLSFTGDQDANKLKPIAKDII---QPRLERIAGVA 169

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +    D ++L+    T  ++S      N +                 Q 
Sbjct: 170 SVSMSGGQERLVKITVDQAKLQSYGITLDQISQALSSNNVAGSAGSVYRGNTEIQLRVQG 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   E+    +                      +G           +   L  V    
Sbjct: 230 EYKAVSEMGETPI---------------------PVGKGSVKLKDIATVEDSLDDVTTIS 268

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +      +       +R          +          S   
Sbjct: 269 TFNGKPSVNISVTKATGGNTLSIANSVKDSLDSIRKELPQGTQLEMVTDASKPISDSVHS 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   +  IVL + +   +  ++A   I ++ + T  ++   G T+ + S++G++
Sbjct: 329 LVEHAILGLIIAAIVLLLFLNSIRSTIIAAIVIPISFVATFMMMYFTGQTINVISLSGLL 388

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           LG+G  VD  +++ E I  +  + +S+      G  +  + +  S +  ++  + + F  
Sbjct: 389 LGLGSFVDFAVVIIENIFRQRHEGKSMLQGAIDGSKQVGNAVMASALAQIVVFLPVVFVD 448

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   +  A+T+  S + ++  ++ IV  +    +     +SI  +   +        
Sbjct: 449 GIAGVLFKPLALTVIFSHIAALVVSLLIVPMLGSRWLPTIPDESIYSSRTYKGINPIVWF 508

Query: 539 AIQFMRAR 546
            I F + +
Sbjct: 509 NIGFEKFK 516



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 96/254 (37%), Gaps = 8/254 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +    P  + V  S++ S+    +       ++   V++    G +     + + +   +
Sbjct: 771  LRITTPQGIDVPLSSVVSIDKRTVPDTVTREDQTRQVQITADIGGTGDILTINQKIDALL 830

Query: 643  TEIVPLSTIQNTEIVGPKISRE-LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
                           G             + +++S + + + +  +F+        + ++
Sbjct: 831  KTTHFPEGYSADTGGGQNEQMMESFMNLAIAILLSVVLIYMVMAGQFESLLTPFVIMFSV 890

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               +   L   A+ G   +++A+   + L+G  VN+ +V+ D +   ++L        + 
Sbjct: 891  PPTVIGVLIGLAVTGASLSVSALTGYIMLVGLVVNNAIVMIDFI---IQLRKDGEDRDEA 947

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I    +E L   + T++A  +++LPMA     G       A+ + FG+  AA  ++ +  
Sbjct: 948  IIHGASERLRPILMTTLATVLALLPMAFATGSGNETQAPMAVVVVFGLSFAAIITLILIP 1007

Query: 818  PILLFIYDWRAKNA 831
             + + + +   K  
Sbjct: 1008 VVYVIMDNMIEKRK 1021



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 74/194 (38%), Gaps = 9/194 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            +    L+ ++K++ +   L  + +           L+   I+G+II+AI +L+++    
Sbjct: 293 NSVKDSLDSIRKELPQGTQLEMVTDASKPISDSVHSLVEHAILGLIIAAIVLLLFLN--- 349

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                + A   + +    T       G   N+ +++ +L  +G  V+  VV+ + +    
Sbjct: 350 SIRSTIIAAIVIPISFVATFMMMYFTGQTINVISLSGLLLGLGSFVDFAVVIIENI---F 406

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
           +      S          +     + +++A  +  LP+       G +    A+ + F  
Sbjct: 407 RQRHEGKSMLQGAIDGSKQVGNAVMASALAQIVVFLPVVFVDGIAGVLFKPLALTVIFSH 466

Query: 806 VVAASSSIFIAAPI 819
           + A   S+ I   +
Sbjct: 467 IAALVVSLLIVPML 480


>gi|90407066|ref|ZP_01215255.1| acriflavin resistance plasma membrane protein [Psychromonas sp.
           CNPT3]
 gi|90311788|gb|EAS39884.1| acriflavin resistance plasma membrane protein [Psychromonas sp.
           CNPT3]
          Length = 1028

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/560 (11%), Positives = 164/560 (29%), Gaps = 29/560 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D ++ F+    ++  +               ++ I +    +         +   +  V
Sbjct: 56  ADLISSFITQPIEQAIAQADNIDFITSQSYMGRSSIKVFMKLNTDPNGAVADILAKVNSV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  + +   +  +T    S++    + + + S   + +  + R    Q+       +
Sbjct: 116 RSVLPSEAEDPTIDLSTGASTSVIYISFSSEILNSS--QITDYLERVIKPQLFSINGVAK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L    DP R+     TT ++       N           F   +   +  
Sbjct: 174 VNLYGGTPFALRIWLDPERMAGFNLTTQEVVQILQANNIQSATGQTNSYFTLFNAKTETQ 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+   E+                      I       +         +    +      +
Sbjct: 234 VKTAAELE-------------------TLIVATREHGKVIRLKDIARVSLEKSHDTYRSM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +          +               V   +  A   S +  
Sbjct: 275 ANGNNAVIVAIDASPTANPLNITAGVREMLPAFSKNMPSSINMEVLYDSTIAIDESINEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +VLIV+ + +   +  ++   +I L++I  L ++ + G T+ L ++  +VL
Sbjct: 335 IKTIVEAGAIVLIVMILFLGSWRAVIIPIVTIPLSLIGVLVVMQMFGFTINLMTLLAMVL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E +    +  ++ F +  +G       +    IT       +   G 
Sbjct: 395 AIGLVVDDAIVVVENVDRHIKAGETPFRAAIIGTREIAGPVISMTITLAAVYAPIALMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID-----INPLSRFFLI 534
             G     FA+T+  ++ +S F A+++   M   +++     +           +     
Sbjct: 455 ITGSLFTEFALTLAGAVFVSGFIALTLSPMMCSVMLKSNHQPNRFEQIVESTLSNITLRY 514

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              + I   R     +   ++F    +   +        + KG + +   A    +L  +
Sbjct: 515 SRMLDIIMTRRPAVILFAILVFLSLPLLFKYIPSELAPTEDKGALMVMAKAPANANLDYI 574

Query: 595 RSNLESLQIGDISFQNFDGE 614
            +++  +    +   +    
Sbjct: 575 ENSMYEITDMAMQQPSVKST 594



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 85/255 (33%), Gaps = 7/255 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                + + L  +                       +        + +  T  +  +   
Sbjct: 247 TREHGKVIRLKDIARVSLEKSHDTYRSMANGNNAVIVAIDASPTANPLNITAGVREMLPA 306

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
            ++ +P S              E I + I  ++ +   +LI + +    W   +  I T+
Sbjct: 307 FSKNMPSSINMEVLYDSTIAIDESINEVIKTIVEAGAIVLIVMILFLGSWRAVIIPIVTI 366

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +   L    +FG   NL  + A++  IG  V+D +VV + +    +      +    
Sbjct: 367 PLSLIGVLVVMQMFGFTINLMTLLAMVLAIGLVVDDAIVVVENV---DRHIKAGETPFRA 423

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                 E  G  +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++ 
Sbjct: 424 AIIGTREIAGPVISMTITLAAVYAPIALMGGITGSLFTEFALTLAGAVFVSGFIALTLSP 483

Query: 818 PILLFIYDWRAKNAR 832
            +   +     +  R
Sbjct: 484 MMCSVMLKSNHQPNR 498



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 84/254 (33%), Gaps = 11/254 (4%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G   +       V LS + S     +   +S  N        V L      S A      
Sbjct: 762  GNFFVKAKNGDMVPLSELISINIMAEPRSLSHFNQLNSATVGVVLAPGVAMSEAIEFFDN 821

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALG 695
            +   K+ +               +    L    I+ ++I    + + +  +F+     L 
Sbjct: 822  LATTKLPQ-GYSHDYLGEARQFVEEGSALYATFILAILI----IFLVLASQFESVRDPLV 876

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             + T+ L I+  L   A      N+     ++TL+G      +++ +  ++        +
Sbjct: 877  ILMTVPLAISGALVAMAWGAATMNIYTQVGLITLVGLITKHGILIAEVAKEE--QLHNGL 934

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
            +  D + K+ +  L   + T+ A    ++P+      G        + +  G+ +    +
Sbjct: 935  NRTDAVKKAASVRLRPILMTTAAMVAGLIPLLFATGAGAVSRFGIGVVIVAGLSIGTLFT 994

Query: 813  IFIAAPILLFIYDW 826
            +FI   I  FI   
Sbjct: 995  LFILPVIYSFIASK 1008


>gi|167819705|ref|ZP_02451385.1| RND transporter, HAE1/HME family protein [Burkholderia pseudomallei
           91]
 gi|254300458|ref|ZP_04967904.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 406e]
 gi|157810160|gb|EDO87330.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 406e]
          Length = 1036

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/608 (11%), Positives = 182/608 (29%), Gaps = 42/608 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL   +        + ++P A+    IS+  D  G S  +++  
Sbjct: 22  RRPVLSLVFSLLILLVGLRALM-----SLPVRQYP-ALESATISVATDYPGASQELMQ-- 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 GF+     +  +          +  Q ++ +      +   +    +V   +Q 
Sbjct: 74  ------GFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQ 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     + +  ++R     +       
Sbjct: 128 VKYKLPADAYDSVITKLTDAPTAVMYLGFASDAL--SIAQITDYVVRVAQPLVTTVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D +RL     +   ++      N                     
Sbjct: 186 SAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANT 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D    +                   + +     G           +           
Sbjct: 246 DLTDVGAFN------------------EMVVKSAPNGGGLVRLKDVATVEIGGENYNSSA 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +   G +   +                      S + 
Sbjct: 288 LMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVEIANMFDGARFVNASIAE 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L+++ + AL+   G +L L ++  +V
Sbjct: 348 VRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMV 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +  +G     S +     T +     +   G
Sbjct: 408 LAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++L+S   A+++   +   ++  +       K+I+         
Sbjct: 468 GLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHA 527

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + + +   +            + +G I + V A +  +L  
Sbjct: 528 YRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDY 587

Query: 594 VRSNLESL 601
           +      +
Sbjct: 588 MERYAPDI 595



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 9/204 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            VL  +++     V ++ + +          E+       + I  + + +++     +  
Sbjct: 316 AVLPAMERNKPASVEIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLG---SFRA 372

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 373 VIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIE 429

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                         E     +           P+ + G   GS+   FA  +A  ++V+ 
Sbjct: 430 QGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSG 489

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ ++  +   +   R    R+
Sbjct: 490 IVALTLSPMLGSLLLTSRMSEGRV 513



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L I   L    L     N+     ++TLIG 
Sbjct: 865  GFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N       +  R  I+++    L   + T+ A    ++P+    G 
Sbjct: 925  ISKHGILMVS--FANDLQRHEGLDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 982

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V    ++F+   +  F+  
Sbjct: 983  GAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAK 1018


>gi|117920150|ref|YP_869342.1| acriflavin resistance protein [Shewanella sp. ANA-3]
 gi|117612482|gb|ABK47936.1| acriflavin resistance protein [Shewanella sp. ANA-3]
          Length = 1087

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/513 (13%), Positives = 144/513 (28%), Gaps = 41/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    I   G++        +  +   P                    + +  
Sbjct: 9   KRPVTVWMFMLAIMLFGMV-----GFSRLAVKLLPDLSYPTLT---------IRTMYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 55  APVEVEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISEST 180
           +   L +D KK LL+        I+    ++       ++Q       +   ++      
Sbjct: 115 I--ALPLDVKKPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++  + +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQEVHIQLNQEKLSQLNLNADDIKRRINEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I G             + + +  +                 I        D 
Sbjct: 213 INLSAGKVIQGDREYLVRTLNQFNSLEELGQVIVYRDAQTLVRLFEVATITDAFKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +        +           V          + S
Sbjct: 273 TRIGSQESIELAIYKEGDANTVAVAKKLRDELVKINQ-DPKQNKLEVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  + + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALMGSILSMLVIYLFLRNIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L IGL VD+ I+V E I     +  S   +   G       IF S +T L   V L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRCRSEGMSKLDAAVTGTKEVAGAIFASTLTTLAVFVPLVFV 451

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
               G      A+T+  ++L S+  A++ +  +
Sbjct: 452 DGIAGALFSDQALTVTFALLASLLVALTSIPML 484



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 3/222 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + +   A   V L  V +  ++ +      +    E   L   +    ++VA  + L 
Sbjct: 242 GQVIVYRDAQTLVRLFEVATITDAFKERSDITRIGSQESIELAIYKEGDANTVAVAKKLR 301

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               KI +    + ++        I   +       ++ S ++ML+           L  
Sbjct: 302 DELVKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSILSMLVIYLFLRNIIPTLII 361

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  +S
Sbjct: 362 SISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRCRSEGMS 418

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
             D       E  G    +++      +P+    G     F+
Sbjct: 419 KLDAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDGIAGALFS 460



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/265 (15%), Positives = 95/265 (35%), Gaps = 13/265 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                 I     + +   + +P+ LS V      L    I+  +          L Y    
Sbjct: 813  NERDQISDIDALIINPNSPQPIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLS 872

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                     +  + +   V        E +         +   + +I++   + + +  +
Sbjct: 873  DAVAEAQQILSAQVLPASVQARFGGQNEEMEHS-----FQSLKIALILAVFLVYLVMASQ 927

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            F+     L  +  + + +  ++    +     ++     ++ L G  VN+ +V+ DR+  
Sbjct: 928  FESLLHPLLILFAVPMALAGSVLGLYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRIN- 986

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
              +L T  +   + I  +    L   + T++   + +LPMA+    G  V    AI + F
Sbjct: 987  --QLRTEGVDKLEAIKVAAKSRLRPIMMTTLTTTLGLLPMALGLGDGSEVRAPMAITVIF 1044

Query: 804  GIVVAASSSIFIAAPILLFIYDWRA 828
            G+ + ++    I  P+L  ++D + 
Sbjct: 1045 GLSL-STLLTLIVIPVLYALFDRKE 1068


>gi|113969968|ref|YP_733761.1| acriflavin resistance protein [Shewanella sp. MR-4]
 gi|113884652|gb|ABI38704.1| acriflavin resistance protein [Shewanella sp. MR-4]
          Length = 1087

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/513 (13%), Positives = 144/513 (28%), Gaps = 41/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    I   G++        +  +   P                    + +  
Sbjct: 9   KRPVTVWMFMLAIMLFGMV-----GFSRLAVKLLPDLSYPTLT---------IRTMYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 55  APVEVEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISEST 180
           +   L +D KK LL+        I+    ++       ++Q       +   ++      
Sbjct: 115 I--ALPLDVKKPLLLRFNPNLDPIMRLALSVPNASEAELKQMRTYAEEELKRRLEALSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++  + +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQEVHIQLNQEKLSQLNLNADDIKRRINEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I G             + + +  +                 I        D 
Sbjct: 213 INLSAGKVIQGDREYLVRTLNQFNSLEELGQVIVYRDAQTLVRLFEVATITDAFKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +        +           V          + S
Sbjct: 273 TRIGSQESIELAIYKEGDANTVAVAKKLRDELVKINQ-DPKQNKLEVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  + + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALMGSILSMLVIYLFLRNIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L IGL VD+ I+V E I     +  S   +   G       IF S +T L   V L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRCRSEGMSKLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFV 451

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
               G      A+T+  ++L S+  A++ +  +
Sbjct: 452 DGIAGALFSDQALTVTFALLASLLVALTSIPML 484



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 74/222 (33%), Gaps = 3/222 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + +   A   V L  V +  ++ +      +    E   L   +    ++VA  + L 
Sbjct: 242 GQVIVYRDAQTLVRLFEVATITDAFKERSDITRIGSQESIELAIYKEGDANTVAVAKKLR 301

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               KI +    + ++        I   +       ++ S ++ML+           L  
Sbjct: 302 DELVKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSILSMLVIYLFLRNIIPTLII 361

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  +S
Sbjct: 362 SISIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRCRSEGMS 418

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
             D       E  G    ++M      +P+    G     F+
Sbjct: 419 KLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFVDGIAGALFS 460



 Score = 56.2 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 87/217 (40%), Gaps = 8/217 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V L          +  +   ++ ++  V  +++Q       +      +   + +I+
Sbjct: 856  QQRVALVSANLAYGDLSDAVAEAQQILSAQVLPASVQARFGGQNEEMEHSFQSLKIALIL 915

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    +     ++     ++ L G  V
Sbjct: 916  AVFLVYLVMASQFESLLHPLLILFAVPMALAGSVLGLYITQTHLSVVVFIGLIMLAGIVV 975

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+    +L T  +   + I  +    L   + T++   + +LPMA+    G 
Sbjct: 976  NNAIVLVDRIN---QLRTEGVDKLEAIKVAAKSRLRPIMMTTLTTTLGLLPMALGLGDGS 1032

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             V    AI + FG+ + ++    I  P+L  ++D + 
Sbjct: 1033 EVRAPMAITVIFGLSL-STLLTLIVIPVLYALFDRKK 1068


>gi|332297476|ref|YP_004439398.1| protein-export membrane protein SecF [Treponema brennaborense DSM
           12168]
 gi|332180579|gb|AEE16267.1| protein-export membrane protein SecF [Treponema brennaborense DSM
           12168]
          Length = 415

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/246 (26%), Positives = 117/246 (47%), Gaps = 3/246 (1%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +   +  VR  L  L    +          + +R+     ++   + +   V   + E 
Sbjct: 148 TQLASVDEVRDALAGLSDVSVKEVGSGAAAVYQIRIGDDGDEAAGSSNMQLAVATALDEA 207

Query: 646 VPLSTI--QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
               T+    T+ +G + S  L+ + I+ V  +   + +Y  IRFKW FAL ++  +I D
Sbjct: 208 FGHDTVAVIKTDYIGAQFSDSLVFQSILLVAAALFLIWVYATIRFKWDFALASVVAIIHD 267

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               L F     +EFN   +AA+LT+IGY +ND VVV DR+R+NM+      +F D++D 
Sbjct: 268 ALIILVFITWSQMEFNTVTLAAILTIIGYGINDTVVVLDRIRENMRK-VNVKNFMDIVDL 326

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           S ++  GR++ T+    ++V+ + V+    I  FA+ +  G+V +A S++ I +  L   
Sbjct: 327 SQSDCFGRTIITTSTTLLAVISLFVFTSGSIKDFALALIVGMVSSAYSTVMITSAFLKVT 386

Query: 824 YDWRAK 829
                 
Sbjct: 387 RRNWKP 392


>gi|320107850|ref|YP_004183440.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
 gi|319926371|gb|ADV83446.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
          Length = 1036

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 66/550 (12%), Positives = 150/550 (27%), Gaps = 38/550 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L S +   GLL           +   P                     L   
Sbjct: 9   RRPIATILLTSALGLAGLLA-----FNVLPVSPLPQIDSPTIT---------VSAQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +              + I+L F  S+     A +V   +  
Sbjct: 55  SPDVMAAAVATPLERQFGHIAGVTEMTSQSSTGSSTISLQFDLSKNVNAAAREVQAAISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +   N +        + +     I+                   +I   +   
Sbjct: 115 ARTYLPTNLPSNPVYRKVNSADAPIAI-LGIESDTYPVGALYDSASTILQQKIAQIQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +  E +P +L     + A ++      N                     
Sbjct: 174 QITIGGSTLPAVRVEINPLQLEHYGLSLADVATFLKNQNAHSP----------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G   +  T N      +    +                 +      +    
Sbjct: 217 ---TGAVSDGQTTSYITVNDQLSKAEDYRKLGVSTQNGAAVRLEDIATVVDSTENLHSSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        I   +   +   T++        LR+     +              S   
Sbjct: 274 YVNGRQSVDLIIFKQPGANIIETVDRINAQLPALRSAIPAGQTITKIMDATTTIRASLRD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +   +  ++   ++ +++I T   + LL  +L   S+  + 
Sbjct: 334 TELTLLLSIMLVILVVFVFLRDWRAIIIPGIAVPISLIGTFGAMYLLHYSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  +D  I+V E I     +  +   +   G      T+    ++ L   + +   G
Sbjct: 394 ISTGFVIDDAIVVMENITRYVEEGVAPLEAAYKGAQEIGFTVISITLSLLAVFIPILMMG 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FA+T+ ++ILISM  +++    +   +++ ++                   
Sbjct: 454 GIIGRLFREFAVTLSIAILISMILSLTTTPMLCSLLLKRREKSDHGRLYRVIEGGFDWLR 513

Query: 539 AIQFMRARFW 548
            +     R+ 
Sbjct: 514 GLYERTLRWV 523



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 29/234 (12%), Positives = 79/234 (33%), Gaps = 6/234 (2%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            +  +    + N     + ++  Q          R+   +    + I    TI       
Sbjct: 265 STENLHSSGYVNGRQSVDLIIFKQPGANIIETVDRINAQLPALRSAIPAGQTITKIMDAT 324

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             I   L    +  ++   + +L+       W   +     + + +  T G   L     
Sbjct: 325 TTIRASLRDTELTLLLSIMLVILVVFVFLRDWRAIIIPGIAVPISLIGTFGAMYLLHYSL 384

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           +  ++ A+    G+ ++D +VV + +    +     ++  +   K   E     +  +++
Sbjct: 385 DNLSLMALTISTGFVIDDAIVVMENI---TRYVEEGVAPLEAAYKGAQEIGFTVISITLS 441

Query: 779 AFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +P+ + GG +      FA+ ++  I+++   S+     +   +   R K
Sbjct: 442 LLAVFIPILMMGGIIGRLFREFAVTLSIAILISMILSLTTTPMLCSLLLKRREK 495


>gi|239932400|ref|ZP_04689353.1| preprotein translocase subunit SecD [Streptomyces ghanaensis ATCC
           14672]
          Length = 606

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 105/590 (17%), Positives = 202/590 (34%), Gaps = 59/590 (10%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-----F 65
              +  + ++                         LG+DL GG+ + L    +       
Sbjct: 19  SLALILLAIVALTGGMFASGHTAP----------RLGIDLAGGTSITLAAVPEAGQESAI 68

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVNS 124
               +      +   +   G+    ++    + I ++       +   ++V    +    
Sbjct: 69  NKTNMDTAVSIMERRVNGLGVSEAEVQTQGTRNIIVNIPKGTNSKQAREQVGTTAKLYFR 128

Query: 125 -----KLNVDPKKNLLV--------------------------TTTEKEISIVLSQNNID 153
                +L                                                 +   
Sbjct: 129 PVIATELAGGGAAPTPSASGSPSGEGAGKDKATEKATEKAADGKPDGSSPPDSTGPSAGS 188

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
                A+  +++           ++                   D S L+          
Sbjct: 189 TTQGRALTDALKADETPSAGASAADEATPTPTPTPSATGGTSGDDDSGLQARYAALDCTK 248

Query: 214 FHKVLPNNSKKGFMFGVRF--LRDSDGNQYLVEDKVEISGIHL-NGATANFDPKTHKPVV 270
                                       Q  +     + G  +                V
Sbjct: 249 EAVRAKAGDGAKASDSTVACGRNSQGQWQKYLLGPAAVDGTDVDKAQAVLNTQTGAGWTV 308

Query: 271 DISFDEMGARRFFEVT-----RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            + F + GA++F ++T     + +     A+VLDG V++ P ++QA+  G A+ISGNFT 
Sbjct: 309 TMDFTDQGAKKFADITGRLAQKQSPQNQFAIVLDGEVVSDPYVSQALTGGNAEISGNFTQ 368

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +++  LA ML  G+LP+         V A LG + +  G  A   GL L+VL+++V Y  
Sbjct: 369 QSSQELANMLSYGALPLTFREDSVTTVTAALGGEQLQAGLIAGAIGLALVVLYLLVYYRG 428

Query: 386 WGLVADFSIFLNVILTLALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +A  S+ ++  LT  ++SLLG T+     LP++ G ++ IG+  DS I+  ER+R+E
Sbjct: 429 LSFIALLSLLVSAALTYVIMSLLGPTIGFALNLPAVCGAIVAIGITADSFIVYFERVRDE 488

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R+ +++  +++  + RA  TI  S+  + +A  VLF    G V+GFA T+GL+ L+ + 
Sbjct: 489 IREGRTLRPAVERAWPRARRTILVSDFVSFLAAAVLFVVTVGKVQGFAFTLGLTTLLDVV 548

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
                 + ++  + R K   S           +     ++  R     V 
Sbjct: 549 VVFLFTKPLLTLMARRKFFASGHKWSGLDPEALGAKPPLRRTRRSVPAVA 598



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 7/125 (5%)

Query: 707 TLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           T    +L G       NL AV   +  IG + +  +V ++R+R  ++      + R  ++
Sbjct: 444 TYVIMSLLGPTIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIRE---GRTLRPAVE 500

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++        + +   +F++   + V     +  FA  +    ++          P+L  
Sbjct: 501 RAWPRARRTILVSDFVSFLAAAVLFVVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPLLTL 560

Query: 823 IYDWR 827
           +   +
Sbjct: 561 MARRK 565


>gi|254292505|ref|YP_003058528.1| acriflavin resistance protein [Hirschia baltica ATCC 49814]
 gi|254041036|gb|ACT57831.1| acriflavin resistance protein [Hirschia baltica ATCC 49814]
          Length = 1086

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/518 (11%), Positives = 148/518 (28%), Gaps = 40/518 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   ++L  ++C    +IA          +  P       +           + LE    
Sbjct: 10  SRARMVLSILVCA---IIAGIVVYNNLPKEAAPEIQVPFVL---------VTIPLEGISP 57

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           +     L   ++     ++          +   ++ + F      +     V   +    
Sbjct: 58  EDAERLLIRPTEAEVRSIEGIKQVNSVALEGAGQLAIEFEMDADVDQALLDVREKVDMAK 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +  V+ ++ ++         +V+     D         +    R+  + +      ++ 
Sbjct: 118 REFPVETREPIVSEINTARFPVVVVNMYGDLPERGLYSIA----RELQENLEAIPGVLEA 173

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                    L  + DP +L     + A +       NN        +   R S     L+
Sbjct: 174 NIEGDREEVLEIQVDPVKLETYNLSAATIFATIQANNNLIPAGSIDMEQGRYSIKVPGLI 233

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           E                      +   DI+   +G R         + +      +    
Sbjct: 234 ETP--------------------QDAFDIAIKRVGDRVVTIKDVAEVRRTFKDRDEYARF 273

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       ++  +   T+ +     A L+          +            +  +
Sbjct: 274 NGQSAVSVQVVKRSGANILETVASVRATIAELQLNWPDTLNVELTADESAEIGDQIATLQ 333

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            +      LV+I++   +      ++   SI  + ++    L   G T+ +  +  +V+ 
Sbjct: 334 SSIMTAVILVMIIVVGALGLR-SAILVGISIPASFLMGFLFLGWAGYTINMMVLFALVIA 392

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+ VD  I+V E    +  +      +      R +  I  SN T L A +   F+   
Sbjct: 393 VGILVDGAIVVVEYADRKMAEGLDKVEAFATAGKRMFWPIIASNATTLAAFLPFLFWNSM 452

Query: 484 AVRGFA---ITMGLSILISMFTAISIVRAMMIFIIRYK 518
             +  +   IT+   +  S+F A+  +  +   I    
Sbjct: 453 PGKFMSYLPITLIFVLTSSLFMALIFLPVLGGVIGGRN 490



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/269 (10%), Positives = 79/269 (29%), Gaps = 4/269 (1%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  +   GL         I +  + +R V +  V     + +  D   +       
Sbjct: 220 MEQGRYSIKVPGLIETPQDAFDIAIKRVGDRVVTIKDVAEVRRTFKDRDEYARFNGQSAV 279

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +  ++    + +     +     ++    P +              + I      ++ +
Sbjct: 280 SVQVVKRSGANILETVASVRATIAELQLNWPDTLNVELTADESAEIGDQIATLQSSIMTA 339

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            I ++I +        A+    ++         F    G   N+  + A++  +G  V+ 
Sbjct: 340 VILVMIIVVGALGLRSAILVGISIPASFLMGFLFLGWAGYTINMMVLFALVIAVGILVDG 399

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
            +VV +      +     +   +    +        + ++     + LP   W       
Sbjct: 400 AIVVVE---YADRKMAEGLDKVEAFATAGKRMFWPIIASNATTLAAFLPFLFWNSMPGK- 455

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           F   +   ++   +SS+F+A   L  +  
Sbjct: 456 FMSYLPITLIFVLTSSLFMALIFLPVLGG 484



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 64/177 (36%), Gaps = 29/177 (16%)

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA----AVLTLIGY 732
               M + +   F  ++ +  + TL   I  T+G      +  +  ++      V+ L G 
Sbjct: 873  LFLMGVILLWEFNNFYHV--VLTLSAVILSTIGVLIGLQLASSYISMIMTGTGVVALAGI 930

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---- 788
             VN+ +V+ D      +L     +  +    +  + +   + T+      +LPM V    
Sbjct: 931  VVNNNIVLIDTF---QRLILDGRTAHEAAVMTAAQRMRPILLTTGTTICGLLPMVVQMNI 987

Query: 789  -WGGSVIG----------SFAIPMAFGIVVAASSSIFIAAPILLF----IYDWRAKN 830
             +G   I             +  + FG+  +   ++ I  P+ L     +  WR +N
Sbjct: 988  DFGAGTISKGGAASEWWVPLSTAVVFGLGFSTFVTL-IVTPVWLAAPEKMGRWRDRN 1043


>gi|167914867|ref|ZP_02501958.1| RND transporter, HAE1/HME family protein [Burkholderia pseudomallei
           112]
          Length = 1036

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/608 (11%), Positives = 182/608 (29%), Gaps = 42/608 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL   +        + ++P A+    IS+  D  G S  +++  
Sbjct: 22  RRPVLSLVFSLLILLVGLRALM-----SLPVRQYP-ALESATISVATDYPGASQELMQ-- 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 GF+     +  +          +  Q ++ +      +   +    +V   +Q 
Sbjct: 74  ------GFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQ 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     + +  ++R     +       
Sbjct: 128 VKYKLPADAYDSVITKLTDAPTAVMYLGFASDAL--SIAQITDYVVRVAQPLVTTVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D +RL     +   ++      N                     
Sbjct: 186 SAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANT 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D    +                   + +     G           +           
Sbjct: 246 DLTDVGAFN------------------EMVVKSAPNGGGLVRLKDVATVEIGGENYNSSA 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +   G +   +                      S + 
Sbjct: 288 LMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVQIANMFDGARFVNASIAE 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L+++ + AL+   G +L L ++  +V
Sbjct: 348 VRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSSALMLAAGFSLNLLTLLAMV 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +  +G     S +     T +     +   G
Sbjct: 408 LAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++L+S   A+++   +   ++  +       K+I+         
Sbjct: 468 GLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLKRVTHA 527

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + + +   +            + +G I + V A +  +L  
Sbjct: 528 YRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDY 587

Query: 594 VRSNLESL 601
           +      +
Sbjct: 588 MERYAPDI 595



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 9/204 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            VL  +++     V ++ + +          E+       + I  + + +++     +  
Sbjct: 316 AVLPAMERNKPASVQIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLG---SFRA 372

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 373 VIIPVLTIPLSLVGSSALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIE 429

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                         E     +           P+ + G   GS+   FA  +A  ++V+ 
Sbjct: 430 QGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSG 489

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ ++  +   +   R    R+
Sbjct: 490 IVALTLSPMLGSLLLTSRMSEGRV 513



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L I   L    L     N+     ++TLIG 
Sbjct: 865  GFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N       +  R  I+++    L   + T+ A    ++P+    G 
Sbjct: 925  ISKHGILMVS--FANDLQRHEGLDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 982

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V    ++F+   +  F+  
Sbjct: 983  GAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAK 1018


>gi|166363304|ref|YP_001655577.1| preprotein translocase subunit SecD [Microcystis aeruginosa
           NIES-843]
 gi|166085677|dbj|BAG00385.1| protein-export membrane protein [Microcystis aeruginosa NIES-843]
          Length = 468

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 136/482 (28%), Positives = 220/482 (45%), Gaps = 63/482 (13%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDDFVN----GFLQMYSDELRSFLKKEGIGVFSMRQ 93
            + K  + LGLDLRGGS L ++V   + V       L+   + + + +   G+    ++ 
Sbjct: 21  VLIKLPLQLGLDLRGGSQLTIQVKPTETVKTIQPNDLKAVQNVIENRVNALGVSESLVQT 80

Query: 94  IQ--NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +   N++ +        +     +             + +  L     ++          
Sbjct: 81  VDSKNQVIVQLPGVTNPKEAERNL-------------NVQAQLEFRQQKQGTEGEFRAEY 127

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
                  A   +++   +  +   I+E       S   ++ L    D +       T   
Sbjct: 128 SIFQQKKAELAALKAENKPENAAKIAELEQSLQKSKEAILNLFESVDLTGKNLQNATI-- 185

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                    +S +G  + V    DS+G     E    I+G   +      +     PVVD
Sbjct: 186 ---------SSTQGTNWEVAITFDSEGGNKFAELTKAIAGTGRSIGIFLDNELISAPVVD 236

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           + F + G                                 I  G+A I+GNFT ETA  L
Sbjct: 237 VQFAQTG---------------------------------ITGGRAVITGNFTAETANDL 263

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A  LR GSLP  + + E R VGA LG DSI +   A + GL+L+++FM V Y   G++AD
Sbjct: 264 AIQLRGGSLPFPVKVEEIRTVGATLGQDSIRRSIYAGLVGLLLVLIFMAVYYRLPGIIAD 323

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            S+ +  IL+L   +L+G T+TLP IAG +L IG+AVD+N+L+ ER REE R  +S+F +
Sbjct: 324 VSLIIYTILSLGAFALVGVTMTLPGIAGFILSIGMAVDANVLIFERTREELRAGKSLFRA 383

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           ++ GF RA+S+I DSN+T LIA   LF+ G G V+GFA+T+ + + +SMFTA++  R ++
Sbjct: 384 VESGFYRAFSSILDSNVTTLIACAALFWLGSGLVKGFALTLAIGVAVSMFTALTCSRTLL 443

Query: 512 IF 513
           + 
Sbjct: 444 LI 445



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 98/225 (43%), Gaps = 4/225 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L++  I          +           G+  A+T     ++ +   +     ++    V
Sbjct: 225 LDNELISAPVVDVQFAQTGITGGRAVITGNFTAETANDLAIQLRGGSLPFPVKVEEIRTV 284

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ IR+ I   ++  + +LI++ + ++    + A  +LI+    +LG FAL G+ 
Sbjct: 285 GATLGQDSIRRSIYAGLVGLLLVLIFMAVYYRLP-GIIADVSLIIYTILSLGAFALVGVT 343

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      S    ++          + +++
Sbjct: 344 MTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKSLFRAVESGFYRAFSSILDSNV 400

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +   G  ++  FA+ +A G+ V+  +++  +  +LL 
Sbjct: 401 TTLIACAALFWLGSGLVKGFALTLAIGVAVSMFTALTCSRTLLLI 445


>gi|119513145|ref|ZP_01632195.1| cation or drug efflux system protein [Nodularia spumigena CCY9414]
 gi|119462195|gb|EAW43182.1| cation or drug efflux system protein [Nodularia spumigena CCY9414]
          Length = 1039

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 67/549 (12%), Positives = 158/549 (28%), Gaps = 48/549 (8%)

Query: 1   MRNNP----WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           ++N+     ++VI   ++   G+         Q  LD FP   P          +   H 
Sbjct: 10  LKNSIAQRWFIVICAILVTVWGVFTV-----TQMPLDVFPEFAPP---------QVDIHT 55

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                  + V   + +  +   + L        S +   + + + F            VT
Sbjct: 56  EATGLAPEEVESQITVPIESAVNGLPGVTTVRSSSKVGLSMVQVVFDQEADIYKARQSVT 115

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID-QVISHAIEQSMEIIRQRIDQIG 175
             LQ V ++L        +        +I+     ++ Q  +  ++    +     +QI 
Sbjct: 116 ERLQQVTNQLPEGVHPPEISPLASPLGTILQYAFTVNGQGKTSLMDLRRLVDSTLSNQIL 175

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 Q         Q     DP +LR L  +  +++      N++  G          
Sbjct: 176 SVPGVTQVTVYGGDERQEQVLVDPEKLRSLNVSLTEVTNAAKSANSNAPGGFL------- 228

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                        I G            K+   +          +         +    A
Sbjct: 229 -------------IGGGQELLVRGIGQVKSIADLQQSVVKVQDGKPILLKDVAEVKTGAA 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +               + + +  +      +    +   L+    P        R     
Sbjct: 276 LKRGDASFNGQPAVVMMINKQPDVDTPTVTKAVEAMLQSLQDTFPPDVQMARTFRQSNFI 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             + +    +      +V +++ + ++  +  ++   +I L++++ L  +   G  +   
Sbjct: 336 DTAIANVSSSLIQGIIIVSVIMLLFLMNWRTAVITLSAIPLSLLIGLMFMKAFGLGINTM 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNIT 469
           ++ G+V+ IG  VD +I+  E      R NQ        F  +     +    +  S + 
Sbjct: 396 TLGGLVVAIGSVVDDSIVDMENCYRGLRTNQAQGNPKHPFEVVYETSVQVRLAVIFSTVI 455

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++    +F      G           LSI  S   A+++  A+   ++  + +      
Sbjct: 456 IVVVFAPIFSLTGVEGNIFAPMGFAYLLSICASTLVAMTLSPALCTILLANQTLPQEGTF 515

Query: 527 PLSRFFLIP 535
                  + 
Sbjct: 516 ISRWAERLY 524



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 99/255 (38%), Gaps = 9/255 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +    P   ++    +  ++ G  +      + + L+ +     +    + V ++  +  
Sbjct: 782  IPITTPTGQTIQLGVVAKVEYGMGANVVNREDVSRLIVVSANVAERDLGSVVGDIQSQIQ 841

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +I   +          +  +      +V  I++AIA+ + ++   K   A  AI  L L
Sbjct: 842  QKIKLPNGYFIQYGGQFESEQRASNNLLVFSILAAIAIAVLMFFSVKSLPATIAI-MLNL 900

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +    G  ++   G   ++ ++   +TL G +V + +++ D        +   +  +D+
Sbjct: 901  PLALVGGIISIALSGGVMSIASLIGFITLFGVAVRNGLLLVDNYN---NKFAQGMPLKDV 957

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I K   E +   + T++ + + +LP+A+    G  ++   AI +  G+  + + ++ +  
Sbjct: 958  IVKGSLERVNAILMTALTSALGMLPLAIASGAGNEILQPLAIVVLGGLFTSTALTLLVIP 1017

Query: 818  PILLFIYDWRAKNAR 832
             +            +
Sbjct: 1018 ALYAKFGKQLMPQQK 1032



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 80/260 (30%), Gaps = 9/260 (3%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            I       + V   +P+ L  V        +              ++  +    D+   
Sbjct: 245 SIADLQQSVVKVQDGKPILLKDVAEVKTGAALKRGDASFNGQPAVVMMINKQPDVDTPTV 304

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKW 690
           T+ +E + + + +  P                  I      +I   I + +I +     W
Sbjct: 305 TKAVEAMLQSLQDTFPPDVQMARTFRQSNFIDTAIANVSSSLIQGIIIVSVIMLLFLMNW 364

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MRK 746
             A+  ++ + L +   L F   FG+  N   +  ++  IG  V+D +V  +     +R 
Sbjct: 365 RTAVITLSAIPLSLLIGLMFMKAFGLGINTMTLGGLVVAIGSVVDDSIVDMENCYRGLRT 424

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAF 803
           N         F  + + S+   L     T +   +   P+    G    +          
Sbjct: 425 NQAQGNPKHPFEVVYETSVQVRLAVIFST-VIIVVVFAPIFSLTGVEGNIFAPMGFAYLL 483

Query: 804 GIVVAASSSIFIAAPILLFI 823
            I  +   ++ ++  +   +
Sbjct: 484 SICASTLVAMTLSPALCTIL 503


>gi|152981067|ref|YP_001353372.1| AcrB/AcrD/AcrF family membrane protein [Janthinobacterium sp.
           Marseille]
 gi|151281144|gb|ABR89554.1| AcrB/AcrD/AcrF family membrane protein [Janthinobacterium sp.
           Marseille]
          Length = 1029

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/616 (11%), Positives = 162/616 (26%), Gaps = 43/616 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G+L           +   P                     L    
Sbjct: 10  RPVATTLITIGIALAGIL-----GFNLLPIAPLPQVDFPTI---------SVSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +                + L F  SR  +  A  V   +   
Sbjct: 56  PDTMAATVATPLERALGAIAGVNEITSRSSLGSTNVVLQFDLSRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + L      N            I++     D +    +  +   I     ++   E   
Sbjct: 116 RTLLPTGMPSNPTYRKVNPAAAPIMIISLTSDTLTRGQMYDAASTI--LAQRLSQVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +    +P +L  +  +   +       N ++      +       G   
Sbjct: 174 QVNVGGGALPAVRVALNPDKLAAMGISLDNVRTAITNTNANRPKGSVELDDQYWQIGAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +                       +                ++   +  V +  
Sbjct: 234 QARTAAD--------------------YAPVVLSYRDGASVRLRDVADVVDSVQDVRNYG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +             +   +   T++    +   L+A         V          S   
Sbjct: 274 LANGKPAIVMFLLKEPGANIIETVQNVRDILPRLQASIPQAIQMNVITDRTPTIKASLRE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + +  I  GLV++V+ + +   +  L+   ++ +++  T  ++ L G +L   S   + 
Sbjct: 334 VERSMGIAVGLVILVVLLFLRNWRATLIPAVAVPVSLAGTFGVMYLCGYSLDNLSAMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I     +  +   +   G      T+   +++ +   + L   G
Sbjct: 394 VATGFVVDDAIVVLENITRYIEQGLTPREAALKGAREIGFTVVSISLSLIAVFIPLLMMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+ +  +IL+SM  +++    M   +++    K         F       
Sbjct: 454 GVVGRLFREFAVVLTAAILVSMVVSLTTTPMMAATLLKQNTEKRKPGRIGQWFNRFN--- 510

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                  R   +       +  I LL    LN  +            +  V +  V+++ 
Sbjct: 511 RAVQRGYRHSLIWTLRHQPLAIIALLAVVALNVHLYIAIPKTFFPQQDTGVLIGGVQADQ 570

Query: 599 ESLQIGDISFQNFDGE 614
            S         +   +
Sbjct: 571 GSSFQMMQKRLDTFSD 586



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + +  T G   L G   +  +  A+    G+ V+D +VV + +    +
Sbjct: 356 WRATLIPAVAVPVSLAGTFGVMYLCGYSLDNLSAMALTVATGFVVDDAIVVLENI---TR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                ++ R+   K   E     V  S++     +P+ + GG V      FA+ +   I+
Sbjct: 413 YIEQGLTPREAALKGAREIGFTVVSISLSLIAVFIPLLMMGGVVGRLFREFAVVLTAAIL 472

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           V+   S+     +   +     +  +
Sbjct: 473 VSMVVSLTTTPMMAATLLKQNTEKRK 498



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S    ++  +               + +     V+ +     +   I ++    +++   
Sbjct: 781  SAFTRVETTNTPLAVSHQSGTPASTISFNLPLGVSLSDATVAINNAIGKLGVPVSVRGGF 840

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                   +E +    + +  + I + + + I ++     +  ++TL       L    +F
Sbjct: 841  QGTANAFQESLSSQPLLIGAAIIVIYLVLGILYESLIHPITILSTLPSAGVGALLALKMF 900

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              EF++ A+  V+ LIG    + +++ D      +           I ++    +   + 
Sbjct: 901  NTEFSIIALIGVILLIGIVKKNAIMMIDFAITRQRHGMVRAGP--AIYRAALLRVRPILM 958

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+ AA    LP+A+    G  +     I +  G++++   +++    + + +   R    
Sbjct: 959  TTFAAIFGALPLALGSGDGAELRQPLGIAIVGGLILSQLLTLYTTPVVFVLMDKLRRDKH 1018

Query: 832  R 832
            +
Sbjct: 1019 K 1019


>gi|66770159|ref|YP_244921.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|66575491|gb|AAY50901.1| acriflavin resistance protein [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 1046

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/540 (12%), Positives = 142/540 (26%), Gaps = 38/540 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPVIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + + F  +R  ++ A  V   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSMVFMIFQSNRDIDSAAQDVQTAINS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      D     A E           ++       
Sbjct: 115 AQSDLPSGLGTPMYQKANPNDDPVIAIALTSD--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +     
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIIAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVAKAAD-------------------FAQLAISTQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LRA   P                S   
Sbjct: 274 WFNGKPAVVMYAFTRAGANIVETVDQVKAQIPELRAYLQPGTTLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQATLMISLAMVVLTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E I     +      +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDDAIVVIENIMRHLDEGMPRLQAALTGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + D +
Sbjct: 454 GMVGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSAHTAPETPSRFGAWLDRMHDRM 513



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 59/151 (39%), Gaps = 7/151 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 338 LMISLAMVVLTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
           + V+D +VV + +   M+     +           E     V  + +     +PM     
Sbjct: 398 FVVDDAIVVIENI---MRHLDEGMPRLQAALTGAREIGFTIVSITASLVAVFIPMLFASG 454

Query: 791 --GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             G+    F + +   IVV+   S+ +   +
Sbjct: 455 MVGAFFREFTVTLVAAIVVSMLVSLTLTPAL 485


>gi|145298328|ref|YP_001141169.1| acriflavin resistance protein [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851100|gb|ABO89421.1| Acriflavin resistance protein [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 1036

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 82/654 (12%), Positives = 187/654 (28%), Gaps = 54/654 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD- 61
              W+V+   +I  +GLL           +  FP                  HL + VD 
Sbjct: 10  RPIWVVVSIVLIFLLGLLSI-----RGLPIQLFPDIDRP-------------HLNISVDW 51

Query: 62  ---EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +   +    ++    ++       +      +I L FA     +     V   
Sbjct: 52  RSASPQEMESEITDPIEQEMQGVQGLKSLTSNSFPGFTEIDLEFALGTDMQRAQLDVISR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L  V S L  +     +   +  +         +  V     +    I  +   ++    
Sbjct: 112 LNRV-SGLPDNIGGPYVNNYSSNDTLTFFFIQQLPGVKGQIDDHQALIEARVKPELERIP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                        Q+    DP R  +L      ++       +   G +      R    
Sbjct: 171 GVSTVEVEGINERQIQIRFDPYRAAELGVEIPVLASRASTGWDVSAGTLD---IGRWEYK 227

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            ++     V+  G  +                            +      I        
Sbjct: 228 LRFAGRYDVDTLGDKVVDW-------------------RDGLPIYLRDVAEIRLSREENP 268

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG--SLPIKLNIVEERNVGADL 356
             R+        A    ++  +    +E   +  + L                       
Sbjct: 269 VLRIQNGNTAIAAQIFKESGANALAALEAIKVKVSDLNRDVLEPVGLHMEQSFDASLYIN 328

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +  +      +   L   +L++ +   K  L+   +I ++++LT  LL +LG TL + S
Sbjct: 329 RAVGMVTANLGLGVLLSCAILWLFLRQLKATLMIALAIPISIMLTFCLLKVLGRTLNVIS 388

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +AGI   +G+ +D+ I+V E I   + +   S   +   G  + ++ +  S +T +   +
Sbjct: 389 LAGIAFAVGMVLDAAIVVLESIYRRHERGDLSKAEAALEGTRQVWTALVASTLTTVAIFL 448

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +       G      A+T+  ++ +SM  A++++ A+    +  +++     +   R  
Sbjct: 449 PVLLLNDVEGQLFADLALTIACAVTVSMLVAVTVLPAVAARWMGRERLVDPYDSLWQRTT 508

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG---IQLGVLANRPV 589
                      R     + +  L ++ +  LL        +        +      N   
Sbjct: 509 RHVIRWTGTAPRRWSIIILMMSLPALATWALLPKMDYLPDVKRDAVDVWMSFTPGFNLKA 568

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               V   L +     +  +     KN+ +           + +    +K+   
Sbjct: 569 QPEEVIDTLIARLAPYMKGEKEPVLKNYYIMRYPGGAQIGVRPKDENRIKELEN 622



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 89/281 (31%), Gaps = 16/281 (5%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVD-----LSVVRSNLESLQIGDISFQNFDGEKN 616
             L      Y + F G   +  L ++ VD        +R   E     + +        N
Sbjct: 217 GTLDIGRWEYKLRFAGRYDVDTLGDKVVDWRDGLPIYLRDVAEIRLSREENPVLRIQNGN 276

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +  Q            LE +K K++++           +       L     VG++ +
Sbjct: 277 TAIAAQIFKESGANALAALEAIKVKVSDLNRDVLEPVGLHMEQSFDASLYINRAVGMVTA 336

Query: 677 AIAMLIYI------WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            + + + +          +    L     + + I  T     + G   N+ ++A +   +
Sbjct: 337 NLGLGVLLSCAILWLFLRQLKATLMIALAIPISIMLTFCLLKVLGRTLNVISLAGIAFAV 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  ++  +VV + +    +     +S  +   +   +     V +++      LP+ +  
Sbjct: 397 GMVLDAAIVVLESI--YRRHERGDLSKAEAALEGTRQVWTALVASTLTTVAIFLPVLLLN 454

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              G +    A+ +A  + V+   ++ +   +         
Sbjct: 455 DVEGQLFADLALTIACAVTVSMLVAVTVLPAVAARWMGRER 495



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 19/137 (13%), Positives = 50/137 (36%), Gaps = 12/137 (8%)

Query: 695  GAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              +  L L +    G  AL        +  +L  +   + L+G  VN+ +++   + +  
Sbjct: 888  AVLVLLTLPLASVGGVLALHLSGLLVPLPMDLLTIIGFVILLGLVVNNAILL---VHQTR 944

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S +  +  ++   +     TS+ +   +LP+ +    G  +    A  +  G+
Sbjct: 945  SAERDGMSRQCAVADALRSRMRPIAMTSLTSIFGMLPLMLSPSEGSEIYRGLATVIVGGM 1004

Query: 806  VVAASSSIFIAAPILLF 822
              +   ++ +    L  
Sbjct: 1005 SCSTLFTLILLPAFLRL 1021


>gi|76817978|ref|YP_335238.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           pseudomallei 1710b]
 gi|126442851|ref|YP_001062577.1| RND HAE1/HME family protein [Burkholderia pseudomallei 668]
 gi|126456706|ref|YP_001075531.1| RND HAE1/HME family protein [Burkholderia pseudomallei 1106a]
 gi|134283442|ref|ZP_01770142.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 305]
 gi|167828082|ref|ZP_02459553.1| RND transporter, HAE1/HME family protein [Burkholderia pseudomallei
           9]
 gi|167849548|ref|ZP_02475056.1| RND transporter, HAE1/HME family protein [Burkholderia pseudomallei
           B7210]
 gi|167898145|ref|ZP_02485547.1| RND transporter, HAE1/HME family protein [Burkholderia pseudomallei
           7894]
 gi|167906513|ref|ZP_02493718.1| RND transporter, HAE1/HME family protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167922709|ref|ZP_02509800.1| RND transporter, HAE1/HME family protein [Burkholderia pseudomallei
           BCC215]
 gi|217418891|ref|ZP_03450398.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 576]
 gi|226198320|ref|ZP_03793890.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei
           Pakistan 9]
 gi|237509299|ref|ZP_04522014.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           pseudomallei MSHR346]
 gi|242313433|ref|ZP_04812450.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 1106b]
 gi|254190198|ref|ZP_04896707.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei Pasteur
           52237]
 gi|254263221|ref|ZP_04954086.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 1710a]
 gi|76582451|gb|ABA51925.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           pseudomallei 1710b]
 gi|126222342|gb|ABN85847.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 668]
 gi|126230474|gb|ABN93887.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 1106a]
 gi|134245191|gb|EBA45285.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 305]
 gi|157937875|gb|EDO93545.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei Pasteur
           52237]
 gi|217398195|gb|EEC38210.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 576]
 gi|225929604|gb|EEH25621.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei
           Pakistan 9]
 gi|235001504|gb|EEP50928.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           pseudomallei MSHR346]
 gi|242136672|gb|EES23075.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 1106b]
 gi|254214223|gb|EET03608.1| RND transporter, HAE1/HME family [Burkholderia pseudomallei 1710a]
          Length = 1036

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/608 (11%), Positives = 182/608 (29%), Gaps = 42/608 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL   +        + ++P A+    IS+  D  G S  +++  
Sbjct: 22  RRPVLSLVFSLLILLVGLRALM-----SLPVRQYP-ALESATISVATDYPGASQELMQ-- 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 GF+     +  +          +  Q ++ +      +   +    +V   +Q 
Sbjct: 74  ------GFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQ 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     + +  ++R     +       
Sbjct: 128 VKYKLPADAYDSVITKLTDAPTAVMYLGFASDAL--SIAQITDYVVRVAQPLVTTVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D +RL     +   ++      N                     
Sbjct: 186 SAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANT 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D    +                   + +     G           +           
Sbjct: 246 DLTDVGAFN------------------EMVVKSAPNGGGLVRLKDVATVEIGGENYNSSA 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +   G +   +                      S + 
Sbjct: 288 LMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVQIANMFDGARFVNASIAE 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L+++ + AL+   G +L L ++  +V
Sbjct: 348 VRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMV 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +  +G     S +     T +     +   G
Sbjct: 408 LAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++L+S   A+++   +   ++  +       K+I+         
Sbjct: 468 GLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHA 527

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + + +   +            + +G I + V A +  +L  
Sbjct: 528 YRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDY 587

Query: 594 VRSNLESL 601
           +      +
Sbjct: 588 MERYAPDI 595



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 9/204 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            VL  +++     V ++ + +          E+       + I  + + +++     +  
Sbjct: 316 AVLPAMERNKPASVQIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLG---SFRA 372

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 373 VIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIE 429

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                         E     +           P+ + G   GS+   FA  +A  ++V+ 
Sbjct: 430 QGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSG 489

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ ++  +   +   R    R+
Sbjct: 490 IVALTLSPMLGSLLLTSRMSEGRV 513



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L I   L    L     N+     ++TLIG 
Sbjct: 865  GFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N       +  R  I+++    L   + T+ A    ++P+    G 
Sbjct: 925  ISKHGILMVS--FANDLQRHEGLDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 982

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V    ++F+   +  F+  
Sbjct: 983  GAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAK 1018


>gi|159026055|emb|CAO86296.1| secD [Microcystis aeruginosa PCC 7806]
          Length = 468

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 134/484 (27%), Positives = 222/484 (45%), Gaps = 67/484 (13%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDDFV----NGFLQMYSDELRSFLKKEGIGVFSMRQ 93
            + K  + LGLDLRGGS L ++V   + V       L+   + + + +   G+    ++ 
Sbjct: 21  ILIKLPLQLGLDLRGGSQLTIQVKPTETVTTIQPNDLKAVQNVIENRVNALGVSESLVQT 80

Query: 94  IQ--NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           +   N++ +        +     + +  Q    +     +       +            
Sbjct: 81  VDSKNQVIVQLPGVTDPKEAERNLNVQAQLEFRQQKQGTEGEFRAEYS------------ 128

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
                         I +Q+  ++   ++  +   + +I       Q        L  +  
Sbjct: 129 --------------IFQQKKAELAALKAQNKPENAAKIAELEQSLQKSKEAILNLFESVD 174

Query: 212 MS--FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           ++    +    +S +G  + V    DS+G     E    I+G   +      +     PV
Sbjct: 175 LTGKNLQNATISSTQGTNWEVAITFDSEGGSKFAELTKAIAGTGRSIGIFLDNELISAPV 234

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           VD+ F + G                                 I  G+A I+GNFT ETA 
Sbjct: 235 VDVQFAQTG---------------------------------ITGGRAVITGNFTAETAN 261

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            LA  LR GSLP  + + E R VGA LG DSI +   A + GL+L+++FM V Y   G++
Sbjct: 262 DLAIQLRGGSLPFPVKVEEIRTVGATLGQDSIRRSIYAGLVGLLLVLIFMAVYYRLPGII 321

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           AD S+ +  IL+L   +L+G T+TLP IAG +L IG+AVD+N+L+ ER REE R  +S+F
Sbjct: 322 ADVSLIIYTILSLGAFALVGVTMTLPGIAGFILSIGMAVDANVLIFERTREELRAGKSLF 381

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +++ GF RA+S+I DSN+T LIA   LF+ G G V+GFA+T+ + + +SMFTA++  R 
Sbjct: 382 RAVESGFYRAFSSILDSNVTTLIACAALFWLGSGLVKGFALTLAIGVTVSMFTALTCSRT 441

Query: 510 MMIF 513
           +++ 
Sbjct: 442 LLLI 445



 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 98/225 (43%), Gaps = 4/225 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L++  I          +           G+  A+T     ++ +   +     ++    V
Sbjct: 225 LDNELISAPVVDVQFAQTGITGGRAVITGNFTAETANDLAIQLRGGSLPFPVKVEEIRTV 284

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ IR+ I   ++  + +LI++ + ++    + A  +LI+    +LG FAL G+ 
Sbjct: 285 GATLGQDSIRRSIYAGLVGLLLVLIFMAVYYRLP-GIIADVSLIIYTILSLGAFALVGVT 343

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      S    ++          + +++
Sbjct: 344 MTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKSLFRAVESGFYRAFSSILDSNV 400

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +   G  ++  FA+ +A G+ V+  +++  +  +LL 
Sbjct: 401 TTLIACAALFWLGSGLVKGFALTLAIGVTVSMFTALTCSRTLLLI 445


>gi|42524450|ref|NP_969830.1| efflux transporter [Bdellovibrio bacteriovorus HD100]
 gi|39576659|emb|CAE80823.1| efflux transporter [Bdellovibrio bacteriovorus HD100]
          Length = 1070

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/658 (9%), Positives = 169/658 (25%), Gaps = 41/658 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              ++  +   +  +G             +D +P                    V     
Sbjct: 10  RPIFITCVTIAMVVVGWAS-----FKSMSVDLYPDVSIPVVT---------VQTVYAGAG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +E  S +           +  +++ + F      ++   +V   +   
Sbjct: 56  PAEIETLVSRPIEEEVSTISGIKRLTSKSLEGVSQVIVEFNSEVDVKHAEQEVRDKVNLA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            +KL  D +  L+      +  I+        +   A+       +    ++    +   
Sbjct: 116 KAKLPDDVEDPLIKRFDPADTPILTVSLTAKDLGDAALF--DIADQFVKPRLEQVRNVGA 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    D  +LR    + ++++        +                    
Sbjct: 174 IEIIGGREREIHVLLDRKKLRAREISVSQVAAQVGASGQNIPSGKVNQGEKEMVFRGLGE 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                EIS                     +                 +   LA       
Sbjct: 234 FSSVPEIS-------------------DTLVNLYGNEVPTRVADLGKVVDTLADEKSRAY 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI---KLNIVEERNVGADLGSD 359
           +            ++  +     +        ++     +    +  V          + 
Sbjct: 275 VDGEKSLFLQVYRQSGSNTVKVAQDVIKQMERIKPELEKMEGAPVVAVMTDASVKISDNL 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T  I   L +I +F  +   +   +   S+ +++I    ++ + G ++ + S+  
Sbjct: 335 YDVYETIIIGILLTVITVFFFLGSPRSTFITALSVPISLIGAFMVMKIAGFSINIVSMLA 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM---GFSRAYSTIFDSNITALIATVV 476
           + L +GL +D  I+V E I       +    + +        A   I    I   +    
Sbjct: 395 LTLAVGLLIDDAIVVIENIYRRMELGEESLTAAEKGTTEIQMAVMAITLVVIAVFVPVGT 454

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +    G  ++ F +T+  S+ IS F A++++  +  +          D +  +  +    
Sbjct: 455 MSGTIGQFLKQFGMTVVFSMAISWFVAMTLIPMLTAYFGGSGHGGGHDKHKPAGLYDKTL 514

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              ++        +    +  +          +   +         V       +S   S
Sbjct: 515 GRMVKGFDRFQTMLENLYVKLLNVSLDWPKVTIGLTMVVFFLSIYTVTKVPGAFISDDDS 574

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              S+ +      + DG +    ++     D+        +V     E    S     
Sbjct: 575 GEFSVTLELQPGTSLDGTEEVARQVDKILHDNPEVRFTTMIVGSLYGESNKASFYVRM 632



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 69/174 (39%), Gaps = 7/174 (4%)

Query: 658  GPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
              +  +EL+   ++ +  + + + LI   +   +   +  +  L L +        L G 
Sbjct: 860  DAENMQELMTSTVMALGFAILFIYLILSSLYESFITPITIMVALPLALCGAFLALFLTGE 919

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
               + A+     LIG +  + +++ D  ++ M+   +    R+ +  +    L   + TS
Sbjct: 920  VLTIFAIFGFFMLIGVAGKNGILLVDFAKQMMEEGKSR---REALILAGKTRLRPILMTS 976

Query: 777  MAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             A    V+P+ +   +   +     + +  G++ +   ++ +   +  ++  +R
Sbjct: 977  FALIAGVVPVVIGMNAASKTRTAMGVAIIGGMISSTILTLIVVPAVFTYVDRFR 1030



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 74/191 (38%), Gaps = 4/191 (2%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           + +E +K ++ ++     +        KIS  L       +I   + ++   +       
Sbjct: 302 KQMERIKPELEKMEGAPVVAVMTDASVKISDNLYDVYETIIIGILLTVITVFFFLGSPRS 361

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                 ++ + +        + G   N+ ++ A+   +G  ++D +VV + + + M+L  
Sbjct: 362 TFITALSVPISLIGAFMVMKIAGFSINIVSMLALTLAVGLLIDDAIVVIENIYRRMELGE 421

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
            S++  +     I   +       +A F+ V  M+   G  +  F +     +V + + S
Sbjct: 422 ESLTAAEKGTTEIQMAVMAITLVVIAVFVPVGTMSGTIGQFLKQFGMT----VVFSMAIS 477

Query: 813 IFIAAPILLFI 823
            F+A  ++  +
Sbjct: 478 WFVAMTLIPML 488


>gi|153217318|ref|ZP_01951069.1| protein-export membrane protein SecD [Vibrio cholerae 1587]
 gi|124113659|gb|EAY32479.1| protein-export membrane protein SecD [Vibrio cholerae 1587]
          Length = 470

 Score =  142 bits (358), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 182/387 (47%), Gaps = 35/387 (9%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +       + LGLDLRGG H ++EVD D  +   +    +  RS L+ E I
Sbjct: 93  NLAPSTPDWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRDEKI 152

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++R + + + ++  D+         +    +        D       +     +   
Sbjct: 153 RYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHR--------DMTFTTSESDGRFVLVAK 204

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
            ++  + ++ ++A+EQ++ I+R R++++G++E  +QR G+ RI+++LPG QD +R +++L
Sbjct: 205 FTEARLQEIRNYAVEQNITILRNRVNELGVAEPLVQRQGATRIVVELPGVQDTARAKEIL 264

Query: 207 GTTAKMSFHKV-----LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           G TA + F +V     L   +      G     D +G   +++ +V + G  +    ++ 
Sbjct: 265 GATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKRVILGGSSITD-ASSS 323

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV------------------L 303
             +  +P V+IS D  G  +    ++ NIGK +A V                       +
Sbjct: 324 ADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEV 383

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 Q+      +I+G  +   A  LA +LRAG+L   ++IVEER +G  +G  +I  
Sbjct: 384 INQATIQSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDM 443

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           G  A + G+V ++LF ++ Y K+G++A
Sbjct: 444 GIQACIWGMVAVMLFTVLYYRKFGMIA 470


>gi|325298683|ref|YP_004258600.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides salanitronis DSM 18170]
 gi|324318236|gb|ADY36127.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides salanitronis DSM 18170]
          Length = 1044

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 64/592 (10%), Positives = 164/592 (27%), Gaps = 45/592 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
              ++++P                           + V   + +  +E  + ++      
Sbjct: 30  NLPMEQYPDIATPTV---------SVSATYTGANAETVQKSVVIPLEEAINGVEDMIYMT 80

Query: 89  FSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
            +        IT+ F      +         +      L  +  +  +     +   + +
Sbjct: 81  STSTNTGAGDITVYFKQGTDPDMATINTKNRVSEAEGLLPAEVTQIGVTVEKRQNSMLKI 140

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
                          +         ++                  +    DP ++ Q   
Sbjct: 141 IALYSPDDSYDQTFINNYFKINIEPRLSRISGVGNVNVMGD-DYAMRIWLDPQKMAQYGL 199

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
             A ++      N        G                    +  H          K  +
Sbjct: 200 LPADVTAVLDEQNVEAATGTLGEDSE----------------NAFHYTLKYRGRYEKPEE 243

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
               +                 +            +       A+ S  A  + N  I  
Sbjct: 244 FGNLVITSLESGEVLRLKDIATVELGTQSYSHSSEVDGHPGATAMISQTAGSNANEIISE 303

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
              L   ++       + +           S      T      LV++V+++ +   +  
Sbjct: 304 IDKLMEEVQQELPKGLVLVDLMSTKEFLDASIHEVVKTLIEAIVLVVLVVYVFLQSVRST 363

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN-Q 446
           ++   SI ++++ T A L + G +L L ++  +VL IG  VD  I+V E ++ +  +  +
Sbjct: 364 IIPTISILVSLVGTFAFLYVAGFSLNLLTLFALVLVIGTVVDDAIVVVEAVQAQFDEGIR 423

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTA 503
           S + +         + I  +++  +   +   F GG +      F +TM +++ IS   A
Sbjct: 424 SPYQATSRAMDGIATAIVTTSLVFMAVFIPTSFMGGTSGTFYMQFGLTMAVAVGISAVNA 483

Query: 504 ISIVRAMMIFIIRY--------------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +++  A+   ++                +  ++ + +           +   F R    G
Sbjct: 484 LTLCPALCALLMTPHADKASGQKLSFSSRFHQAFETSFNRLVLRYKSGVKWFFRRKWLVG 543

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            G+    ++ ++ +  T       +  G + + V       LS     +  +
Sbjct: 544 AGVIASIALLAVLMKNTKTGLVPDEDMGTVFVNVTTPPGSSLSQTIKAMAEV 595



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 57/138 (41%), Gaps = 5/138 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +    ++++ +  T  F  + G   NL  + A++ +IG  V+D +VV + ++   
Sbjct: 359 SVRSTIIPTISILVSLVGTFAFLYVAGFSLNLLTLFALVLVIGTVVDDAIVVVEAVQAQF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S      ++++      V TS+      +P +  GG+       F + MA  +
Sbjct: 419 DEGIR--SPYQATSRAMDGIATAIVTTSLVFMAVFIPTSFMGGTSGTFYMQFGLTMAVAV 476

Query: 806 VVAASSSIFIAAPILLFI 823
            ++A +++ +   +   +
Sbjct: 477 GISAVNALTLCPALCALL 494



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 79/264 (29%), Gaps = 16/264 (6%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
              D    + +       V +    +  ++     ++  N          +          
Sbjct: 781  DTDALNNMFVRTDEGGMVPIGQFVTLTKTYGPETLTRFNLYSSIQVNAMMNDGYSSGDVI 840

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRF 688
              V E+ ++ +           T       S  +       ++ +   + +Y+    +  
Sbjct: 841  KAVEEVAQQTLPVGYGYEYGGITREEAGSGSNTV-------IVFAICIVFVYLILCALYE 893

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              +  L  + ++   +  +     L G+E N+     ++ LIG      ++V +      
Sbjct: 894  SLFIPLAVMLSVPFGLLGSFALSNLCGLENNIYMQTGLIMLIGLLAKTAILVTE---YAA 950

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GI 805
                  +S       +    L   + T +   I +LP+    G    G+ ++      G+
Sbjct: 951  TRRRQGMSLAQAAVSAATVRLRPIIMTVLCMVIGMLPLVFASGAGANGNISLGTGVVGGM 1010

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            +V   + +F    + +     + +
Sbjct: 1011 IVGTLALLFAVPALFIVFQAMQER 1034


>gi|316934230|ref|YP_004109212.1| acriflavin resistance protein [Rhodopseudomonas palustris DX-1]
 gi|315601944|gb|ADU44479.1| acriflavin resistance protein [Rhodopseudomonas palustris DX-1]
          Length = 1035

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/681 (11%), Positives = 174/681 (25%), Gaps = 45/681 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G++           +   P+      +                 
Sbjct: 10  RRPVGTTLLAIGLFLVGMVA-----YAALPVAALPNVDFPMIM---------VQASRPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +      +I L F+  R  ++ A  V   +  
Sbjct: 56  APAVMASTVAAPLERRLGEIAGLDQITSTSSLGNTRIQLQFSIGRNVDSAARDVQAAINA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D              + V     +      A             +I       
Sbjct: 116 AVRDLPTDLPTLPKFRKFNSAAAPVYI-LALTSKTMSASAIYDVADTVLAQRISQVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +    +P  L     +T  +    V  N       F    L ++     
Sbjct: 175 DVTVSGADQPAVRIALNPVALSNAGISTDDVRTAIVAANPVGPVGSFDGPRLTETLSTNP 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E  GI +                       G           +           
Sbjct: 235 QMRTAEEFRGIVIK--------------------SDGNGTVRLSDVATVSDATRNARTIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +   T++    L   L+          V     G    S   
Sbjct: 275 WYNKQPAVIIQITKQGDANVIETVDRVKALLPELKQWIPAGVDISVLADRTGTIRASVDD 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A LV++V+ + +      + A  S+ L +  T A + L G ++   S+  + 
Sbjct: 335 MQWTLLATAVLVMVVVLLFLRRLTPTIAAGVSVPLALAGTCAGMWLSGFSINNLSLMALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E +     +  +   +   G  +   T+   +++ + A   L F  
Sbjct: 395 IAVGFVVDDAIVMIENMYRNLERGMAPLPAALEGARQIGFTVLSISLSLVAAFAPLIFMD 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  +R F++T+  +I +S   ++++   +    IR +               +   +
Sbjct: 455 GLIGRLLREFSLTLTFAIAVSTVVSLTLTPMICAHYIRPEASPKQTWFDRLVEGTLSRIV 514

Query: 539 AIQFMRARFWG-------VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                  R          V      ++     +      + ID  G +     A+  +  
Sbjct: 515 GFYAWTLRAVLGVPWLTVVVFIATIALTVTLYIKVPKGYFPIDDSGFVIGSTRASADISF 574

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R   E L    ++     G  + L       G S   T  + +      E V    +
Sbjct: 575 QSMRKLQEQLADIVMADPAVAGVGSVLGGGGPGAGGSNRGTMFINLKPNAEREGVTTQMV 634

Query: 652 QNTEIVGPKISRELIRKGIVG 672
            +           +       
Sbjct: 635 IDRLRRQLSQVAGIRLFMFAA 655



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 76/213 (35%), Gaps = 10/213 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----RKG 669
            K   V +Q            ++ VK  + E+           V    +  +        
Sbjct: 277 NKQPAVIIQITKQGDANVIETVDRVKALLPELKQWIPAGVDISVLADRTGTIRASVDDMQ 336

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              +  + + M++ +    +    + A  ++ L +  T     L G   N  ++ A+   
Sbjct: 337 WTLLATAVLVMVVVLLFLRRLTPTIAAGVSVPLALAGTCAGMWLSGFSINNLSLMALAIA 396

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G+ V+D +V+ + M +N+      ++      +   +     +  S++   +  P+   
Sbjct: 397 VGFVVDDAIVMIENMYRNL---ERGMAPLPAALEGARQIGFTVLSISLSLVAAFAPLIFM 453

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            G +   +  F++ + F I V+   S+ +   I
Sbjct: 454 DGLIGRLLREFSLTLTFAIAVSTVVSLTLTPMI 486



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 92/283 (32%), Gaps = 11/283 (3%)

Query: 546  RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
            R      +       +  +        ID K          +    +VVR+      +  
Sbjct: 742  RQIATIYTQRNQYQVVLEIDPKFQTDPIDLKRIYVASSSGEQVPLSAVVRAERGLAALAV 801

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
               Q           L   P           + +  + E +  S   N        S   
Sbjct: 802  AHTQGVPSTTVSFNTLPDVPLQEATGNIQRAVDELHMPEGIRGSFDGNAGDFRATSS--- 858

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              K  + ++ + IAM I + + ++     L  I+TL       L    + G E ++ A  
Sbjct: 859  --KQPLLILAAFIAMYIVLGVLYESLAHPLTIISTLPSAGLGALLALLVTGTELSVIAFV 916

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ LIG    + +++ D   +        +S  D I ++        + T++AA  + +
Sbjct: 917  GIIMLIGIVKKNGIMMVDFALE--AERDRGLSSADAIFEACIVRFRPILMTTLAALFAAI 974

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            P+ V    G  +     I +  G+ V+   +++    I L I 
Sbjct: 975  PLVVAVGPGTELRRPLGITIIGGLFVSQVLTLYTTPVIYLLID 1017


>gi|291300657|ref|YP_003511935.1| acriflavin resistance protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290569877|gb|ADD42842.1| acriflavin resistance protein [Stackebrandtia nassauensis DSM
           44728]
          Length = 1074

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/528 (11%), Positives = 166/528 (31%), Gaps = 25/528 (4%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           +++   +   G+       +PQ     FPS  +P   ++ G                  V
Sbjct: 14  LVIMIAVVLTGIGA---YVIPQLKQQLFPSLSLPMATVASG----------YAGASPQIV 60

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    +     L        +  +  +++ ++F   R  + I   +   +  V ++L
Sbjct: 61  EEQVTKPIENSLKNLDGAEEVTSTSSEGMSQVRVAFDYDRESDEIVSDIQEAVNKVEAEL 120

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             D +  ++  +T+    + L+ +N D       +   ++    + ++   ++  +   +
Sbjct: 121 PDDVEPRVIAGSTDDIPVVALAVSNGDDSDDGEAKLLDKLETTVVPELESVDNVKEAQVT 180

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                Q+    D   + +   +   +         S             S      ++  
Sbjct: 181 GARAEQVTITPDTEEMTKKGLSPTAIPTALEANGVSVPAGTLTEGDKSMSVQVGESLKSV 240

Query: 247 VEISGIHLN--------GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            +I  ++L          +      +              A+     +   + K      
Sbjct: 241 EDIENLYLTPGASASGGQSQQGGGGQAGGQAGGQQGGAAAAKPVKLGSVAEVKKEPETAT 300

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                          +  +  +              L+          V      +   S
Sbjct: 301 SITRTNGKESLGISVTMTSDGNAVNISHDIDAKLDDLKDTLGDEVEMSVIFDQAPSVEKS 360

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                    +     ++V+ + +L  +  LV   SI L+V++ L  L +   +L + ++ 
Sbjct: 361 IDDLTTEGGLGLLFAVLVIMIFLLSLRSTLVTAVSIPLSVVIALISLWIGDYSLNMLTLG 420

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + + +G  VD  I+V E I+      ++   ++  G       +  S +T +   + + 
Sbjct: 421 ALTISVGRVVDDAIVVLENIKRHLSYGEAKREAVINGVREVSGAVTSSTLTTVAVFLPIA 480

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           F     G     FAIT+ +++L S+  ++++V  +  + ++  K   +
Sbjct: 481 FVSGMVGQLFSSFAITVTVALLASLIVSLTVVPVLAYWFLKAPKGDKV 528



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 88/207 (42%), Gaps = 10/207 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                L+ +K  + + V +S I +      K   +L  +G +G++ + + ++I++     
Sbjct: 329 DIDAKLDDLKDTLGDEVEMSVIFDQAPSVEKSIDDLTTEGGLGLLFAVLVIMIFLL---S 385

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    ++ L +   L    +     N+  + A+   +G  V+D +VV + ++   +
Sbjct: 386 LRSTLVTAVSIPLSVVIALISLWIGDYSLNMLTLGALTISVGRVVDDAIVVLENIK---R 442

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIV 806
             +   + R+ +   + E  G    +++      LP+  V G  G +  SFAI +   ++
Sbjct: 443 HLSYGEAKREAVINGVREVSGAVTSSTLTTVAVFLPIAFVSGMVGQLFSSFAITVTVALL 502

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
            +   S+ +  P+L + +    K  ++
Sbjct: 503 ASLIVSLTVV-PVLAYWFLKAPKGDKV 528



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 81/223 (36%), Gaps = 8/223 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        D      +   +  ++ ++              +   E      + ++
Sbjct: 834  DGDRTATVSAVADVSDLGAITTDLNTELKDLDLPEGTSYEVAGSSQDQEEAFADLGLAML 893

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I+   + + +   F+ +   L  + ++    T  +G   L  +   +  +  +L LIG  
Sbjct: 894  IAIALVFMVMVATFRSFVQPLILLVSIPFAATGAIGMLKLTDVPLGVPGMIGLLMLIGIV 953

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV----W 789
            V + +V+ D + +        +  R+ +       L   + T++A  ++++PMA+     
Sbjct: 954  VTNAIVLIDLINQYRAQ---GMGIREAVIAGGRRRLRPILMTAIATIMALIPMAIGVTGS 1010

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            GG +  S AI +  G+V +   ++ +   +   +   + +  R
Sbjct: 1011 GGFIAQSLAIVVIGGLVSSTLLTLLLVPALYTMVERIKERFRR 1053


>gi|70732372|ref|YP_262128.1| AcrB/AcrD/AcrF family protein [Pseudomonas fluorescens Pf-5]
 gi|68346671|gb|AAY94277.1| AcrB/AcrD/AcrF family protein [Pseudomonas fluorescens Pf-5]
          Length = 1031

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/521 (13%), Positives = 146/521 (28%), Gaps = 38/521 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               V+L   +  +G +       P+  +   P A                   L     
Sbjct: 15  PVATVLLTFALVLLGAIA-----FPRLPVAPLPEAEFPTIQ---------VSAALPGASP 60

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D +   +    +   S +        S     + +TL F  ++  +  A +V   +    
Sbjct: 61  DTMASSVATPLEVQFSAIPGMTQMTSSSALGSSLLTLQFTLNKSIDTAAQEVQAAINTAA 120

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            KL  D              S VL   +I        E S         QI   +   Q 
Sbjct: 121 GKLPKDMPTLPTWKKVNPADSPVLI-LSISSTQMPGTELSDYAETLLARQISQIDGVGQI 179

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             + +    +  +    +L  +  T A +                              +
Sbjct: 180 NITGQQRPAIRVQASADKLAAIGLTLADIRLAI--------------------QQTSLNL 219

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                     ++  + N      +    +                 +             
Sbjct: 220 AKGALYGESSISTLSTNDQLFHPEEYGQLIVSYKDGAPVHLQDVARVVNGSEDAYVQAWS 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   + S +   +   T++        L A         V          S    +
Sbjct: 280 GDQPGVNLVISRQPGANIVETVDRIQAALPGLEAMLPASVQVKVLVDRTQTIRASLHEVE 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T  I   LV+ V+ + +      L+    + +++  + AL+ +LG +L   ++  IV+ 
Sbjct: 340 ITLLIAVLLVVAVMALFLRQWSATLIVSAVLGVSLTASFALMYVLGFSLNNLTLVAIVVA 399

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG-- 481
           +G  VD  I+V E I         +  +   G      T+   + + + A + L F G  
Sbjct: 400 VGFVVDDAIVVVENIHRHLEAGDGMREAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGV 459

Query: 482 -GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            G   + FA+T   +I+IS+  ++++   +    +R     
Sbjct: 460 VGRLFKEFALTATSTIMISVVVSLTLAPTLAALFMRAPVHP 500



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 98/269 (36%), Gaps = 7/269 (2%)

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
           I  L T+   +  +  G + +      PV L  V   +   +   +   + D     LV 
Sbjct: 230 ISTLSTNDQLFHPEEYGQLIVSYKDGAPVHLQDVARVVNGSEDAYVQAWSGDQPGVNLVI 289

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +    + V     ++     +  ++P S      +   +  R  + +  + ++I+ + +
Sbjct: 290 SRQPGANIVETVDRIQAALPGLEAMLPASVQVKVLVDRTQTIRASLHEVEITLLIAVLLV 349

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           +  + +  + W   L     L + +T +     + G   N   + A++  +G+ V+D +V
Sbjct: 350 VAVMALFLRQWSATLIVSAVLGVSLTASFALMYVLGFSLNNLTLVAIVVAVGFVVDDAIV 409

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGS 796
           V + +    +        R+   K   E     V  S +   + +P+   GG V      
Sbjct: 410 VVENIH---RHLEAGDGMREAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKE 466

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           FA+     I+++   S+ +A  +      
Sbjct: 467 FALTATSTIMISVVVSLTLAPTLAALFMR 495



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 80/203 (39%), Gaps = 6/203 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + ++ +  +EI   + I        +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVILLNQAKSEIGMPTAISGNFQGAAQAFQSSLASQPYLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L    L G +F++ A+  ++ LIG    + +++ D   +  +  
Sbjct: 882  HPLTIISTLPSAGLGALLMLWLCGQDFSIMALIGLVLLIGIVKKNGILMIDFALEAQRHG 941

Query: 752  TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               +   + I ++        + T+   +   + ++     G  +     I +  G++V+
Sbjct: 942  --GLPPEEAIYQACITRFRPIIMTTLAALLGALPLMLGYGAGAELRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
             + ++F    I L++     +  
Sbjct: 1000 QALTLFTTPVIYLWLERLFHRPQ 1022


>gi|34497081|ref|NP_901296.1| multidrug efflux protein [Chromobacterium violaceum ATCC 12472]
 gi|34102938|gb|AAQ59302.1| probable multidrug efflux protein [Chromobacterium violaceum ATCC
           12472]
          Length = 1018

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/544 (11%), Positives = 160/544 (29%), Gaps = 39/544 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +       +  +I  +GL       L    ++++P                         
Sbjct: 9   KRPVLATTISLLIVVLGL-----RSLFGLPINQYPQTQNAVVT---------ISTTYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   V GF+    +   +  +       S     + IT +   +        ++   +  
Sbjct: 55  DAKTVAGFITQPLESAIAQAQGIDYLSSSSNNGVSTITATLRLNYDANRALTEINTQVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++ +L   T +    +      + + ++ +  +  ++R    ++       
Sbjct: 115 VKNQLPAQAQQPVLTVQTGQTTDAMYMGFYSETLPTNNV--TDYLVRVVKPKLDSVAGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    D +++     T A +S      N          + +        
Sbjct: 173 TAEILGARQFALRAWLDSAKMAAHGVTAADISAALASNNALSAPGSSKGQMV-------- 224

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                + ++        A+F          ++    G           +           
Sbjct: 225 ----TIPLTADTDLHTVADFKQ--------LAIKRNGDAIVRLEDVAMVTLGSENYDFNV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +             + +     E        ++          +   +      S   
Sbjct: 273 AFSGVRSVFIGIKVAPEANILDVAERVRKAFPAVQQQLPTGLTGQIVYDSTDFINTSIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V +V+F+ +   +  +V   ++ L++I T  ++ +LG ++ L ++  +V
Sbjct: 333 VVKTLVEALVIVTVVIFLFLGSFRAVVVPVIAMPLSLIGTFFIMLMLGYSINLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    R+ ++ F +  +        I    +  +   V + F G
Sbjct: 393 LAIGLVVDDAIIVVENVDRHMREGKTPFEASIIAARELGGPILAMTVVLVAVYVPIGFQG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA T+  S+ +S   A+++   M           S  ++ + R F      
Sbjct: 453 GLTGALFTEFAFTLAASVTVSGVVALTLSPMMCSRFFNADMDNSPFVHAIDRTFERVRHG 512

Query: 539 AIQF 542
             + 
Sbjct: 513 YRRI 516



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 82/216 (37%), Gaps = 8/216 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              L  +        +Q  VL+ ++  + ++ P     +      +  +E     +  +  
Sbjct: 793  QQLNSVTISGVPGASQGEVLQYLRDTVQQVAPTGYSVDYSGQSRQFMQESGGFLVTMLFA 852

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE-FNLTAVAAVLTLIGYSV 734
              I  L    +   +   +  + ++ L +   +  F   G    N+     ++TL+G   
Sbjct: 853  VIIVFLALSALFESFRDPVVILVSVPLALFGAM-IFIFLGFSSLNIYTEVGLVTLMGLIS 911

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
               +++ +   +   L  T +S R+ I+++ +  L   + T+ A    V+P+ +  G+  
Sbjct: 912  KHGILIVEVANE---LRKTGLSKREAIEEAASIRLRPILMTTAAMVFGVIPLVIASGAGA 968

Query: 795  GS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                   + +  G+ +    ++F+   + +FI   R
Sbjct: 969  AGRYAMGLVIFTGLSIGTLFTLFVVPAMYMFIASRR 1004



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 85/264 (32%), Gaps = 7/264 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                 L      + +     + +    +  V L  V       +  D +         F
Sbjct: 222 QMVTIPLTADTDLHTVADFKQLAIKRNGDAIVRLEDVAMVTLGSENYDFNVAFSGVRSVF 281

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +        + +     +      + + +P                  I + +  ++ + 
Sbjct: 282 IGIKVAPEANILDVAERVRKAFPAVQQQLPTGLTGQIVYDSTDFINTSIHEVVKTLVEAL 341

Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           + + + I++    +   +  +  + L +  T     + G   NL  + A++  IG  V+D
Sbjct: 342 VIVTVVIFLFLGSFRAVVVPVIAMPLSLIGTFFIMLMLGYSINLLTLLALVLAIGLVVDD 401

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            ++V + +    +      +  +    +  E  G  +  ++      +P+   G   G++
Sbjct: 402 AIIVVENV---DRHMREGKTPFEASIIAARELGGPILAMTVVLVAVYVPIGFQGGLTGAL 458

Query: 794 IGSFAIPMAFGIVVAASSSIFIAA 817
              FA  +A  + V+   ++ ++ 
Sbjct: 459 FTEFAFTLAASVTVSGVVALTLSP 482


>gi|38233957|ref|NP_939724.1| preprotein translocase subunit SecD [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200219|emb|CAE49903.1| Putative protein export membrane protein [Corynebacterium
           diphtheriae]
          Length = 592

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 109/585 (18%), Positives = 213/585 (36%), Gaps = 58/585 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+ P+   L+     I ++ AL      +     P         LG+DL+GG+ + L   
Sbjct: 13  RSWPFKS-LFGFTVLIAIIYAL--VFATADHSARP--------KLGIDLQGGTRVTLVPQ 61

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS--RFKENIADKVTLFL 119
             +     L      L + +   G+   S+    N + ++           +     L  
Sbjct: 62  GQNPTEDQLAQAKSILENRVNGMGVSGASVVSDGNTLVITVPGEDTTQARALGQTSQLLF 121

Query: 120 QGVNSKLNVDPK--------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
           + V      D                +  ++T  E   ++  +   + Q      E +  
Sbjct: 122 RPVAKPDAPDTTKLLDAMKEMANRWVEVGVLTPQEANDALSNTAKALAQSEGKKPEDAKA 181

Query: 166 IIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
                 +    + S       +++L  +  ++  +     L  ++ +             
Sbjct: 182 PTVTAKEPKEPANSIESEQLRNKVLEVMKKDRQSTDATTQLSASSLLKCDDTPDPLQGTD 241

Query: 226 FMFGVRFLRDSDGNQYLVEDKV-------------EISGIHLNGAT-------ANFDPKT 265
                    D    Q  V                  ++G  ++                 
Sbjct: 242 DPTKPLVACDPSSGQVYVLSPAPLLQGETDQANGKRLTGNEIDTNRPITGGLNPQTGQME 301

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQISGNFT 324
                     + G+  + ++T++ + K +A+ LD ++++APVI  A        I+G+F+
Sbjct: 302 IGFSFKSDNGDQGSATWAKLTQEYLQKQVAITLDSKIISAPVIQSATPVGSATAITGSFS 361

Query: 325 IETAGILAAMLR------AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378
            + A  LA  L+      + +            V A LG  S+  G  A + GL+L+ L+
Sbjct: 362 QKEAQDLANNLKYGALPLSFAGENGETGGTTTTVPASLGVASLKAGLIAGLVGLILVALY 421

Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILV 434
            ++ Y  +GL++ FS+  +  L    L LL    G +L L  IAG+++GIG   DS +++
Sbjct: 422 SLINYRFFGLISMFSLVASFALVFGALVLLGRWIGYSLDLAGIAGLIIGIGTTADSFVVL 481

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
            ERI++E R  +S   S+  G+ RA  TI   N   LI  V+++    G V+GFA T+GL
Sbjct: 482 YERIKDEVRDGRSFRSSVPRGWERARQTIITGNAVTLIGAVIIYILAVGEVKGFAFTLGL 541

Query: 495 SILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
           + +  +     +   +++   R     S   N + +   +     
Sbjct: 542 TTIFDIVVTFLVTAPLVVLASRKPWTSSGAANGMGKIISMHHGAN 586



 Score = 94.4 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 72/230 (31%), Gaps = 32/230 (13%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +     Q         +               T   T  V   +    ++ G++ 
Sbjct: 351 GSATAITGSFSQKEAQDLANNLKYGALPLSFAGENGETGGTTTTVPASLGVASLKAGLIA 410

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++  I + +Y  I +++ F L ++ +L+       G   L G              IGY
Sbjct: 411 GLVGLILVALYSLINYRF-FGLISMFSLVASFALVFGALVLLGR------------WIGY 457

Query: 733 SV----------------NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           S+                +  VV+Y+R++  ++      SFR  + +         +  +
Sbjct: 458 SLDLAGIAGLIIGIGTTADSFVVLYERIKDEVRD---GRSFRSSVPRGWERARQTIITGN 514

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               I  + + +     +  FA  +    +     +  + AP+++     
Sbjct: 515 AVTLIGAVIIYILAVGEVKGFAFTLGLTTIFDIVVTFLVTAPLVVLASRK 564


>gi|306841815|ref|ZP_07474498.1| acriflavin resistance protein [Brucella sp. BO2]
 gi|306288096|gb|EFM59490.1| acriflavin resistance protein [Brucella sp. BO2]
          Length = 1029

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 72/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      ++    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSVVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSVVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAIV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|330875503|gb|EGH09652.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 402

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/423 (11%), Positives = 105/423 (24%), Gaps = 31/423 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G L        Q  L+++P   P                      
Sbjct: 8   RPIFAWVIAICIMLAGALSI-----SQLPLEQYPDIAPPTV---------KISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L     +   S       I+L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDNLTYMSASSSSAGSASISLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L   + D       +    I    +DQI   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGGSDFLMLVALSSDNESVTGTQIGDYISSTLLDQISRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPAKLEKYALMPSDVSSALEAQNTEVSAGQLGALPAVAGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFDNVVVKSTSDGAVVLLSDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEAIKAKLKELEPFYPSQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L+L G ++   ++  
Sbjct: 340 QEVVKSLGEAIVLVVLIMFLFLQNLRATLIPAITVPVVLLGTFGVLALFGYSINTLTMFA 399

Query: 420 IVL 422
           +VL
Sbjct: 400 MVL 402


>gi|169826863|ref|YP_001697021.1| cation efflux system [Lysinibacillus sphaericus C3-41]
 gi|168991351|gb|ACA38891.1| cation efflux system [Lysinibacillus sphaericus C3-41]
          Length = 1017

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/646 (13%), Positives = 200/646 (30%), Gaps = 40/646 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + ++    +  +G +  L     +  +   P   P           G         
Sbjct: 9   KRPVFTIVTMLFVILLGGVSLL-----KIPITLIPELNPPI---------GVVVTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               VN  +    +   + L        + ++  N I L F  S   E++   +   +  
Sbjct: 55  SPTEVNERVTKPLEATLATLPGIKKLQSTSQEGSNLIVLEFNWSTNLEDVQLDILQRID- 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D  K   +     +  I+      +         + +       ++  +E   
Sbjct: 114 -MTPLPNDAGKPSFLKFDPSQFPIIQLSLRAENENVDVRLLAED----LEKELRRTEGVA 168

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S +++ ++    D  +L +   T A +       N S               G+  
Sbjct: 169 SVNVSGKLIEEIQITLDEVKLVEKGLTQADIIQIVQANNVSLP-------------GDPV 215

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L +D   ++   ++  T+  D       V+      G                  V   R
Sbjct: 216 LTDDGKMLTTRIVSTLTSPQDIADLIVSVNPLT---GEALTVGNLASVKRAEQPSVTTTR 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +  ++       +   + E    L  +L           +          + S 
Sbjct: 273 ANEHAAVLMSVLQESGANTAEVSKEFQQTLNELLEKEQYRGITADILVDQGNYVDIAISN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +     ++VLF+ +   K  ++   +I  +VI+T  L+ L   +L + ++  + 
Sbjct: 333 IGSSLILGGLFAMVVLFVFLRSVKSPIIIGIAIPYSVIVTFVLMFLADFSLNIMTLGALA 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIG+ VD+ I+V E I       +    +   G       I  S +T +   + + F  
Sbjct: 393 LGIGMLVDNAIVVIENIERHLGLGKDPITAAQEGTREVALAITASTLTTIAVFIPVMFIE 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+T+  S++ S+  A+++V  +   +++ K +   +    S F+      
Sbjct: 453 GLIGQIFTEFALTISFSLIASLVVALTVVPMLASRLLKMKSINFYEQRSKSLFYRQYKSS 512

Query: 539 AIQFMRARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
            +  ++ R   +    + F +    L            +G   + V   + V +S     
Sbjct: 513 IVWVLQHRMLLLIFTVVCFGLSLFGLTRIGTEFLPPTDEGFTTISVNLEKGVAVSKTEQV 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +  ++      ++ D   + +   Q             EM  K + 
Sbjct: 573 VRKIEERLKQEKDVDVYVSLIGGTQQSQSRGQTSPNQAEMYVKLVP 618



 Score = 92.1 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 95/241 (39%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++ ++ I +        ++   V    +     +   +   V K I       T Q   
Sbjct: 781  EDVATVSIKEGPVSIRRSDQAAAVAFFVEYETKESLGGISAKVDKAIKSAQLAPTTQIVF 840

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                ++    I   ++ VI++ I + I +  +F+ + +    + T+ L I          
Sbjct: 841  SGDRELYDSAIDDMLLAVILAIILVYIVMAAQFESFKYPFVIMFTVPLMIIGVAAAMFAT 900

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                 +T+V  +L L+G  VN+ +V+ D +    +     +S  + I  +  + L   + 
Sbjct: 901  NTLIGVTSVIGILVLVGIVVNNGIVLVDYIN---QQKANGMSAYEAILLATQDRLRPILM 957

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++   + +LP+A+    G  +     I +  G+V +   +++I  PI+  + D   +  
Sbjct: 958  TALTTILGLLPLALGIGEGTEMNQPMGIAVIGGLVTSTLLTLYIV-PIVYSLVDKETRKM 1016

Query: 832  R 832
            R
Sbjct: 1017 R 1017



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 59/180 (32%), Gaps = 10/180 (5%)

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
            G  +   +   G   ++    AM++           +     +   +  T     L   
Sbjct: 322 QGNYVDIAISNIGSSLILGGLFAMVVLFVFLRSVKSPIIIGIAIPYSVIVTFVLMFLADF 381

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             N+  + A+   IG  V++ +VV + +    +             +   E       ++
Sbjct: 382 SLNIMTLGALALGIGMLVDNAIVVIENI---ERHLGLGKDPITAAQEGTREVALAITAST 438

Query: 777 MAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +      +  M + G  G +   FA+ ++F ++     S+ +A  ++  +     K   I
Sbjct: 439 LTTIAVFIPVMFIEGLIGQIFTEFALTISFSLIA----SLVVALTVVPMLASRLLKMKSI 494


>gi|330957868|gb|EGH58128.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 349

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 31/370 (8%), Positives = 78/370 (21%), Gaps = 29/370 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVRDAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                  +          +   T +      + L     P    +           S + 
Sbjct: 280 QFDGKPASGLAIKLATGANALDTAKAIRATVSSLEPFFPPGMKVVYPYDTTPVVSESING 339

Query: 362 YKGTCAIVAG 371
              T      
Sbjct: 340 VVHTLIEAIV 349


>gi|205374634|ref|ZP_03227428.1| cation efflux system [Bacillus coahuilensis m4-4]
          Length = 1023

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/604 (13%), Positives = 179/604 (29%), Gaps = 42/604 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   +I  +G++      L +  L   P   P           G      +  
Sbjct: 9   RRPVFTTVTMFLILILGVVS-----LTRIPLKLIPDLNPPV---------GVVVTTYQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + L        + ++  N I L F+ S   + I ++V   +  
Sbjct: 55  GPTEVVEKVTKPLEQSLATLPGIQDITSTSQEGSNFILLEFSWSTSIDEIQNEVLQRIDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D +K   +     +  I+      D+       +  E+  +   ++   E   
Sbjct: 115 A--PLPDDAEKPRFLKFDPAQFPIIQVSLESDKEE-----ELNELAEELQLELTRVEGVA 167

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++  E +   L +   T   +       N S  G          +     
Sbjct: 168 NVNVSGSFGEEIRIELEQDALEENQLTQQDVVSVIGANNVSMPGDSIISDGKSLTTRILS 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I  I L       +  T K +  ++  E  ++                     
Sbjct: 228 ELTTTSDIENIILLKNPVTNEDITIKDIGTVTLQEEESQSITRS---------------- 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P +  ++       + + +      L+ +L         + +          +   
Sbjct: 272 -NQNPSVLLSVLQESDANTADVSDRFQEELSLLLEEDRFQSVKSDIIFDQGDYIQVAIGN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +     ++VLF+ +   K  L+   +I  +VI+T  L+      L + ++  + 
Sbjct: 331 ITNTLLLGGTFAMLVLFLFLRNIKSPLIIGVAIPYSVIVTFVLMYFSDFALNIMTLGALA 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIG+ VD+ I+V E I       +    +   G     + I  S  T +   + + F  
Sbjct: 391 LGIGMLVDNAIVVIENIYRHLSLGKDPKEAAKDGAKEVGAAITASTFTTIAVFLPVVFIT 450

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
           G        FA+T+  S+  S+  A++++  +   ++   K            F  +   
Sbjct: 451 GIIGELFTEFALTISFSLFASLIVALTVIPMLASIWLKPIKGDFETTRRRSKSFNRLERS 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           I           +  ++L       L            +G   + V       L      
Sbjct: 511 IKWVLHHRFIVFLLTTLLLVASGFGLTRVGTQFLPATDEGFFTISVELENGTALPRTEEV 570

Query: 598 LESL 601
           +  L
Sbjct: 571 VRKL 574



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 90/253 (35%), Gaps = 11/253 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   + L  +           I   N      F +  +         +RV E +     
Sbjct: 774  PSAGYITLDEIAEIQTKEGPVSIDRINQQDAVEFSLTYEATLDLGTISSRVDEAIASLEL 833

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                L        +        I   ++ +I++ + + I +  +F+ + +    + T+ L
Sbjct: 834  PSQTLIKFGGDRELLEDS----IDDMVLAIILAIVLVYIVMSAQFESFKYPFVIMFTVPL 889

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I        +   E ++T++  V+ L G  VN+ +V+ D +    +   + ++  D I 
Sbjct: 890  MIIGVSFALLITNTEISITSIIGVIVLAGIVVNNAIVIVDYIN---QRKASGMNSYDAIV 946

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +S+ +       T+    + +LP+A+    G  +     I +  G++ +   +++I   +
Sbjct: 947  ESVKDRARPIFMTAATTILGLLPLAIGIGEGTEINQPMGITVIGGLLSSTLLTLYIIPAV 1006

Query: 820  LLFIYDWRAKNAR 832
               I        +
Sbjct: 1007 YSLIDKDTRSMKK 1019



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 78/248 (31%), Gaps = 15/248 (6%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            ++         + S       +N  V L            V +  +++++ ++     Q
Sbjct: 251 TIKDIGTVTLQEEESQSITRSNQNPSVLLSVLQESDANTADVSDRFQEELSLLLEEDRFQ 310

Query: 653 NTEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
           + +        + I+  I       ++    AML+           L     +   +  T
Sbjct: 311 SVKSDIIFDQGDYIQVAIGNITNTLLLGGTFAMLVLFLFLRNIKSPLIIGVAIPYSVIVT 370

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                      N+  + A+   IG  V++ +VV + +    +  +     ++       E
Sbjct: 371 FVLMYFSDFALNIMTLGALALGIGMLVDNAIVVIENI---YRHLSLGKDPKEAAKDGAKE 427

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                  ++       LP+       G +   FA+ ++F    +  +S+ +A  ++  + 
Sbjct: 428 VGAAITASTFTTIAVFLPVVFITGIIGELFTEFALTISF----SLFASLIVALTVIPMLA 483

Query: 825 DWRAKNAR 832
               K  +
Sbjct: 484 SIWLKPIK 491


>gi|127512577|ref|YP_001093774.1| acriflavin resistance protein [Shewanella loihica PV-4]
 gi|126637872|gb|ABO23515.1| acriflavin resistance protein [Shewanella loihica PV-4]
          Length = 1082

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/513 (13%), Positives = 150/513 (29%), Gaps = 41/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++        +  +   P                      E  
Sbjct: 9   KRPVSVWMFMLAVILFGMV-----GFSRLAVKLLPDLSYPTIT---------IRTQYEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  + +V   L  
Sbjct: 55  APVEVEQLVSKPIEEAAGIVKGLRKISSISRSGMSDVVLEFEWGTDMDMASLEVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME-IIRQRIDQIGISEST 180
           +  +L +D KK LL+        IV    ++    + +++Q       +   Q+      
Sbjct: 115 I--ELPLDVKKPLLLRFNPNLDPIVRLALSLPDADAQSLKQMRTFAEEELKRQLESLSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++  + +  +L QL     K+                            
Sbjct: 173 AAVRLSGGLEQEVHIQLNQEKLTQLNLNADKIRERIAAE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     + G             +   +  I                +I        D 
Sbjct: 213 INLSAGKVVQGEKEYLVRTLNQFNSLDELGQIIVYRDNQTLVRLFEVADIIDSHKERNDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +              L+  +   +L  V          + S
Sbjct: 273 TRIGSAESIELAIYKEGDANTVAVARKVTAKLNDLKKLNEKAEL-KVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSAALIGSLLSMLVIYLFLRDIVPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L +GL VD+ I+V E I    +   +   +   G       IF S +T L   V L F 
Sbjct: 392 ALAVGLLVDNAIVVLENIDRCRKLGMNKLDAAVTGTKEVAGAIFASTMTTLAVFVPLVFV 451

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
               G      A+T+  ++L S+  A++ +  +
Sbjct: 452 DGVAGALFSDQALTVTFALLASLLVALTTIPML 484



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 94/261 (36%), Gaps = 12/261 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
               I     + +   +N+P+ LS V     +L    I+  +          L Y   +  
Sbjct: 815  RDQISDIDSMIINPNSNQPIPLSAVADVSLNLGPSAINRISQQRVAIVSANLAYGDLNDA 874

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                   + ++ +   + +      E +         +   + +I++   + + +  +F+
Sbjct: 875  VLEARSIIDQQNLPSSIQVRFGGQNEEMEHS-----FQSLQIALILAVFLVYLVMASQFE 929

Query: 690  -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 L  +  + + +  ++    +     ++     ++ L G  VN+ +V+ DR+    
Sbjct: 930  SLVHPLLILIAVPMAVGGSIFGLFITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRIN--- 986

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    I     I+++    L   V T+M   + + PMA+    G  V    AI + FG+
Sbjct: 987  QLRQQGIEKLSAIEEAAKSRLRPIVMTTMTTALGLAPMALGLGDGSEVRAPMAITVIFGL 1046

Query: 806  VVAASSSIFIAAPILLFIYDW 826
             +A   ++ +   +       
Sbjct: 1047 SLATLLTLVVIPALYALFDRK 1067



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 68/206 (33%), Gaps = 3/206 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   ++S +  +   +    E   L   +    ++VA  R +      + ++   + ++
Sbjct: 258 EVADIIDSHKERNDITRIGSAESIELAIYKEGDANTVAVARKVTAKLNDLKKLNEKAELK 317

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
                   I   +       +I S ++ML+           L    ++   +  T     
Sbjct: 318 VIYDQSEFIESAVSEVTSAALIGSLLSMLVIYLFLRDIVPTLIISISIPFSVIATFNMMY 377

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+ ++  +   +G  V++ +VV + +    +     ++  D       E  G  
Sbjct: 378 FADISLNIMSLGGIALAVGLLVDNAIVVLENI---DRCRKLGMNKLDAAVTGTKEVAGAI 434

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFA 798
             ++M      +P+    G     F+
Sbjct: 435 FASTMTTLAVFVPLVFVDGVAGALFS 460


>gi|327402131|ref|YP_004342969.1| acriflavin resistance protein [Fluviicola taffensis DSM 16823]
 gi|327317639|gb|AEA42131.1| acriflavin resistance protein [Fluviicola taffensis DSM 16823]
          Length = 1047

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/586 (10%), Positives = 168/586 (28%), Gaps = 42/586 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +++++++++   GL+        Q   +  P   P                +    
Sbjct: 9   KRPSFIIVIFTILIGGGLIS-----YNQLSYELLPDFSPPILT---------VTTLYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S L+             + + L F  S   +   +     +  
Sbjct: 55  SPATVETQVAKPLEDALSGLENISEVTTFSMDNASVVMLEFKASADIDMALEDAQRKVNN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L    K  ++         ++        +     +    + +Q + QI  ++   
Sbjct: 115 ILNDLPEGAKAPIIAKIEPNASPVLQVSAIAKNMDDR--DFMELMDKQLLPQIKQTKGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +             + D  +L+    + A+++      N             + +     
Sbjct: 173 EVQVIGGEKRAFRVDVDKDKLKMYGLSLAQVNQIVAAANVEFPTGKLKSETEQMTVRLAG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   ++                     ++     G          ++      V+   
Sbjct: 233 KFQTVDDL--------------------RNLIIYTDGTSSVRLGDVADVADGSEDVITVS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE-ERNVGADLGSDS 360
                         ++  +              + A      +            + S  
Sbjct: 273 RYNGINGIGLRVKKQSDANAVDMANLTKQKFKEIEAKYKKEGIKFTVATDTSLPTIESVD 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV  V+ + +   +  ++   +I  ++I T   + +LG TL L ++  +
Sbjct: 333 AVLHDLELAVLLVAAVMMLFLHSLRNAMIVLIAIPASLISTFIAMYMLGYTLNLMTLLAM 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IG+ VD +I+V E I    +  +    +   G +    T     +  ++    + F 
Sbjct: 393 SLVIGILVDDSIVVLENIYRHLQMGKGRRKAALDGRNEIGFTALAITLVDVVVFSPVVFI 452

Query: 481 GGGAV---RGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
            G      R F+I + +S L+S+    ++   +   +        K+     L  F    
Sbjct: 453 EGTISDILRQFSIVVVVSTLMSLLVCFTLTPWLASRLAKEVKLNRKNPFQRFLMWFESGI 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           +     +++   W +   ++  +  I + F      G+   G   +
Sbjct: 513 NSFTNGYVKLVAWSLKHKLIMGLGVIAIFFASMATMGLGIVGQEFV 558



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 79/259 (30%), Gaps = 15/259 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           ++         +    +     +             + L+ +         +  + K+K 
Sbjct: 244 IIYTDGTSSVRLGDVADVADGSEDVITVSRYNGINGIGLRVKKQSDANAVDMANLTKQKF 303

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-----ISAIAMLIYIWIRFKWYFALGAI 697
            EI      +  +      +     + +  V+        +   + +        A+  +
Sbjct: 304 KEIEAKYKKEGIKFTVATDTSLPTIESVDAVLHDLELAVLLVAAVMMLFLHSLRNAMIVL 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +   +  T     + G   NL  + A+  +IG  V+D +VV + +    +        
Sbjct: 364 IAIPASLISTFIAMYMLGYTLNLMTLLAMSLVIGILVDDSIVVLENI---YRHLQMGKGR 420

Query: 758 RDLIDKSINET-LGRSVYTSMAAFISVLPMAVWGG--SVIGSFAIPMAFGIVVAASSSIF 814
           R       NE        T +   +    + + G    ++  F+I     +VV+   S+ 
Sbjct: 421 RKAALDGRNEIGFTALAITLVDVVVFSPVVFIEGTISDILRQFSIV----VVVSTLMSLL 476

Query: 815 IAAPILLFIYDWRAKNARI 833
           +   +  ++    AK  ++
Sbjct: 477 VCFTLTPWLASRLAKEVKL 495



 Score = 45.5 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 82/287 (28%), Gaps = 27/287 (9%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                  +     +            V  +         +++          +        
Sbjct: 759  EEYDIRIMLDKYDRSNMDNINEMTFVTNDGKQVRLSEFADVSIENGYGQLERKNRISNTT 818

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS- 676
            L               +   +KK   +               +    L     +G+I+  
Sbjct: 819  LRSYVLGTAAGSVADSITNYLKKAPLDKNVRMLWGGEVKRQKESMGALGTAMGIGLILVY 878

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKT------LGFFALFGIEFNLTAVA--AVLT 728
             I + +Y    + +      + +LI  I         +G F + G+   L  VA  A+L 
Sbjct: 879  LIMVALYDNFVYPFVVLFSILVSLIGAILALNLTSSNMGIFTMLGMLMLLGLVAKNAILI 938

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
                 V+              L T   S  + + +++ E +   + T++A  + ++P+A 
Sbjct: 939  -----VDFT----------NHLKTEGRSTYNALLEAVRERMRPILMTTIAMVVGMIPIAT 983

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G       A  +  G+  +   +I +   +   +   +AK  R
Sbjct: 984  ATGSGAEWKNGLAWILIGGLTSSMFLTIIVVPIMYYVVDRLQAKFTR 1030


>gi|158424910|ref|YP_001526202.1| putative multidrug resistance protein [Azorhizobium caulinodans ORS
           571]
 gi|158331799|dbj|BAF89284.1| putative multidrug resistance protein [Azorhizobium caulinodans ORS
           571]
          Length = 1031

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/516 (13%), Positives = 150/516 (29%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  MI  +GL       +    + ++P                         
Sbjct: 10  RRPVLAIVVSLMILVLGL-----RAMSSMPILQYPRTQNAIVT---------VSTTYPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + D V GF+    +   +          +     + IT +   +        ++   +  
Sbjct: 56  DPDVVAGFITTPLENAIAQANGIDYMTSTSTTGTSTITANLRLNYDTGKALTEINTKVNS 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++ +L     + I  +      D +  + +  +  +IR    ++   E   
Sbjct: 116 VLNQLPTGTQQPVLTVKVGQTIDAMYIGFRSDAIAPNQV--TDYLIRVVQPKLQAVEGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP RL     T +++S      +                 GN  
Sbjct: 174 TAELLGSKTFAMRAWLDPIRLAAYGVTASEVSTALTNNDYIASL------------GNTK 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++          F         ++   +            N+           
Sbjct: 222 GQMVQVNLTASTSLHNVDEFK--------NLIVKQANGAIVRLKDVANVTLGSDDYDSAT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +    I+        +           V   +      S   
Sbjct: 274 MFNGNQSVYVGIQIAPSANLLDVIKGVRAALPEIERQLPSGLTMGVIYDSSDFVNSSIEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V IV+F  +   +  L+   +I L++I T  ++   G ++ L ++  +V
Sbjct: 334 VIHTLVEALVIVTIVVFAFLGSWRSVLIPVIAIPLSLIGTFLMMLAFGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     +  +   +      +  + I    +  +   V + F G
Sbjct: 394 LAIGLVVDDAIIVVESVNHHMEEGMTALQAAFASARQLANPIIAMTVVLVAVYVPIGFQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G     FA T+  ++ IS   A+++   M   +
Sbjct: 454 GLTGALFTEFAFTLVGAVTISAVVALTLTPMMSARM 489



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 85/258 (32%), Gaps = 14/258 (5%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +       V LS V           ++             +        A T + ++ K+
Sbjct: 767  IRTGDGTMVPLSTVARIETKTVPESLNHFQQVNAATIAGVVAPGVTTGDAITALQDLAKR 826

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
             +     L     +     +    +          + I + + +   F  +   +  + +
Sbjct: 827  TLPAGYTLDFGGASRQYVQESGGFVTTFAF-----ALIVIFLALAALFNSFRDPVVILLS 881

Query: 700  LILDITKTLGFFA--LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            + + +   L F +  + G   N+     + TL+G      +++ +   +   L     S 
Sbjct: 882  VPMSLAGALLFISVGIGGASINIYTQVGLTTLMGLISKHGILMLEVANE---LQLEGKSK 938

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF 814
            RD I  +    L   + T+ A  + V+P+      G +   +  + +A G+ +    +++
Sbjct: 939  RDAIIAAATLRLRPILMTTAAMVLGVVPLIFASGAGAASRYNLGLVIATGLAIGTLFTLY 998

Query: 815  IAAPILLFIYDWRAKNAR 832
            +     + I +   K AR
Sbjct: 999  VVPAAYVLIGETHHKEAR 1016



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 76/233 (32%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V +        D +      +  ++        + +   + +     +I   +P 
Sbjct: 254 VRLKDVANVTLGSDDYDSATMFNGNQSVYVGIQIAPSANLLDVIKGVRAALPEIERQLPS 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                            I + I  ++ + + + I +      W   L  +  + L +  T
Sbjct: 314 GLTMGVIYDSSDFVNSSIEEVIHTLVEALVIVTIVVFAFLGSWRSVLIPVIAIPLSLIGT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                 FG   NL  + A++  IG  V+D ++V + +          ++       S  +
Sbjct: 374 FLMMLAFGFSINLLTLLALVLAIGLVVDDAIIVVESVN---HHMEEGMTALQAAFASARQ 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                +  ++      +P+   G   G++   FA  +   + ++A  ++ +  
Sbjct: 431 LANPIIAMTVVLVAVYVPIGFQGGLTGALFTEFAFTLVGAVTISAVVALTLTP 483


>gi|317127452|ref|YP_004093734.1| acriflavin resistance protein [Bacillus cellulosilyticus DSM 2522]
 gi|315472400|gb|ADU29003.1| acriflavin resistance protein [Bacillus cellulosilyticus DSM 2522]
          Length = 1139

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 84/604 (13%), Positives = 177/604 (29%), Gaps = 43/604 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + ++   +   +G +      L    L   P   P           G      +  
Sbjct: 9   KRPIFTIVTMILFLLLGAIS-----LTNIPLKLMPDIDPPI---------GAVVTSYQNA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   S +           +  +   L F+ +   +++ +++   +  
Sbjct: 55  GPEEVLDKVSKPLESNLSTVPGLNNISSISMEGASMTILEFSWATSIDDVENEIISRMNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L         +     ++ I+    + D+      E   EI      ++   E   
Sbjct: 115 V--PLPDGAGSPNFLRFDPSQLPIIQLSISSDE------EDFDEIAEDLGMELSRIEGIA 166

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               + + + ++  E D   L       + +       N +  G M     L  +    +
Sbjct: 167 SVDITGQAIDEIIVELDQYALEDYGLDQSDVISMIQAHNVTTPGGMVQSGDLEYTTRVLF 226

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I  I L    A  D      V  +                             
Sbjct: 227 ELTTLEDIENIVLTVDMATGDEVALSDVATVEIAPENIGAITRT---------------- 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P I  ++           +      L  +L           V          + S 
Sbjct: 271 -NQDPAIMMSVQQESEANLVQVSTAFNERLDELLDENKYSDLEIAVLFDQGEYVQEAISS 329

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +     ++VLF  +   K   +   +I  +VI+T  LL     +L + ++ G+ 
Sbjct: 330 VSTALILGGLFAILVLFAFLRSFKTPFIIGIAIPFSVIVTFVLLYFTDLSLNIMTLGGLA 389

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIG+ VD++I+V E I       +    +   G  +    I  S +T +   + + F  
Sbjct: 390 LGIGMLVDNSIVVIENIYRHLSMKKDPKTAALDGTKQVGGAITASTLTTISVFLPVVFIS 449

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDC 537
              G     FA+T+  S+L S+  A+++V  +    +   K+         S    I   
Sbjct: 450 GIVGDIFMEFALTVSFSLLASLAVALTVVPMVASRILKTPKENLEEKRQASSFIKGISKM 509

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           I               +L    +  +            +G  Q+ +   R   L    ++
Sbjct: 510 IKWSLKHRFAVLTITFLLLVAGAFGISQVGTEFIPDTDEGFFQIDIEMERGTPLEETLAS 569

Query: 598 LESL 601
           +ES+
Sbjct: 570 VESI 573



 Score = 85.9 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 97/254 (38%), Gaps = 18/254 (7%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V LS V   +E      I+  N +    F ++   Q         V   +     
Sbjct: 771  QTGEYVALSEVVEIVEGEGPVTINRINQESSVQFTLQYGSQYSLGEMSQLVQSTIDDMDI 830

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                  T    + +      +L     + ++++ + + + +  +F+ + +    + ++ L
Sbjct: 831  PTETTVTYTGDQQMMEDAMSDLT----LALMLALVFVYLVLAAQFESFKYPFVIMLSVPL 886

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLI---GYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
                 +G      I     +V A + LI   G  VN+ +V+ D +    K+  + +   D
Sbjct: 887  ---VIIGVMLGLTITLTPLSVMAFIGLIVLAGIVVNNAIVLVDYIN---KMKDSGMRSYD 940

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I + + +     + TS+   + ++P+A+    G  +    AI +  G++ +   ++ I 
Sbjct: 941  AIVEGVKDRARPILMTSVTTILGLVPLALGLGEGAEIQQPMAITVIGGLISSTFLTL-IF 999

Query: 817  APILLFIYDWRAKN 830
             P++   +D + +N
Sbjct: 1000 IPVMYSFFDKQTRN 1013



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/251 (11%), Positives = 81/251 (32%), Gaps = 15/251 (5%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D   +          +         ++  + +  Q        +V     +++ E++  +
Sbjct: 247 DEVALSDVATVEIAPENIGAITRTNQDPAIMMSVQQESEANLVQVSTAFNERLDELLDEN 306

Query: 650 TIQNTEIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDI 704
              + EI       E +++ I  V     +    A+L+       +         +   +
Sbjct: 307 KYSDLEIAVLFDQGEYVQEAISSVSTALILGGLFAILVLFAFLRSFKTPFIIGIAIPFSV 366

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             T        +  N+  +  +   IG  V++ +VV + +    +  +     +      
Sbjct: 367 IVTFVLLYFTDLSLNIMTLGGLALGIGMLVDNSIVVIENI---YRHLSMKKDPKTAALDG 423

Query: 765 INETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             +  G    +++      L  + + G  G +   FA+ ++F    +  +S+ +A  ++ 
Sbjct: 424 TKQVGGAITASTLTTISVFLPVVFISGIVGDIFMEFALTVSF----SLLASLAVALTVVP 479

Query: 822 FIYDWRAKNAR 832
            +     K  +
Sbjct: 480 MVASRILKTPK 490


>gi|15609724|ref|NP_217103.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           H37Rv]
 gi|121638472|ref|YP_978696.1| preprotein translocase subunit SecD [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662426|ref|YP_001283949.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           H37Ra]
 gi|148823782|ref|YP_001288536.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           F11]
 gi|161350063|ref|NP_337163.2| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           CDC1551]
 gi|215404535|ref|ZP_03416716.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           02_1987]
 gi|215412360|ref|ZP_03421120.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           94_M4241A]
 gi|215427988|ref|ZP_03425907.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           T92]
 gi|215431542|ref|ZP_03429461.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           EAS054]
 gi|215446836|ref|ZP_03433588.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           T85]
 gi|224990966|ref|YP_002645653.1| preprotein translocase subunit [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253798332|ref|YP_003031333.1| preprotein translocase subunit secD [Mycobacterium tuberculosis KZN
           1435]
 gi|254232706|ref|ZP_04926033.1| protein-export membrane protein secD [Mycobacterium tuberculosis C]
 gi|254551638|ref|ZP_05142085.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260187600|ref|ZP_05765074.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           CPHL_A]
 gi|260201715|ref|ZP_05769206.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           T46]
 gi|260205908|ref|ZP_05773399.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           K85]
 gi|289444125|ref|ZP_06433869.1| preprotein translocase, SecD subunit [Mycobacterium tuberculosis
           T46]
 gi|289448236|ref|ZP_06437980.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289553623|ref|ZP_06442833.1| preprotein translocase subunit secD [Mycobacterium tuberculosis KZN
           605]
 gi|289575295|ref|ZP_06455522.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           K85]
 gi|289746379|ref|ZP_06505757.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           02_1987]
 gi|289751211|ref|ZP_06510589.1| preprotein translocation complex subunit secD [Mycobacterium
           tuberculosis T92]
 gi|289754705|ref|ZP_06514083.1| export membrane protein secD [Mycobacterium tuberculosis EAS054]
 gi|289758717|ref|ZP_06518095.1| export membrane protein secD [Mycobacterium tuberculosis T85]
 gi|297635197|ref|ZP_06952977.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis KZN
           4207]
 gi|297732189|ref|ZP_06961307.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis KZN
           R506]
 gi|298526060|ref|ZP_07013469.1| export membrane protein secD [Mycobacterium tuberculosis 94_M4241A]
 gi|313659523|ref|ZP_07816403.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis KZN
           V2475]
 gi|2498898|sp|Q50634|SECD_MYCTU RecName: Full=Protein-export membrane protein secD
 gi|1478225|emb|CAB01256.1| PROBABLE PROTEIN-EXPORT MEMBRANE PROTEIN SECD [Mycobacterium
           tuberculosis H37Rv]
 gi|121494120|emb|CAL72598.1| Protein-export membrane protein secD [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124601765|gb|EAY60775.1| protein-export membrane protein secD [Mycobacterium tuberculosis C]
 gi|148506578|gb|ABQ74387.1| protein export protein SecD [Mycobacterium tuberculosis H37Ra]
 gi|148722309|gb|ABR06934.1| protein-export membrane protein secD [Mycobacterium tuberculosis
           F11]
 gi|224774079|dbj|BAH26885.1| preprotein translocase subunit [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|253319835|gb|ACT24438.1| preprotein translocase subunit secD [Mycobacterium tuberculosis KZN
           1435]
 gi|289417044|gb|EFD14284.1| preprotein translocase, SecD subunit [Mycobacterium tuberculosis
           T46]
 gi|289421194|gb|EFD18395.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           CPHL_A]
 gi|289438255|gb|EFD20748.1| preprotein translocase subunit secD [Mycobacterium tuberculosis KZN
           605]
 gi|289539726|gb|EFD44304.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           K85]
 gi|289686907|gb|EFD54395.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           02_1987]
 gi|289691798|gb|EFD59227.1| preprotein translocation complex subunit secD [Mycobacterium
           tuberculosis T92]
 gi|289695292|gb|EFD62721.1| export membrane protein secD [Mycobacterium tuberculosis EAS054]
 gi|289714281|gb|EFD78293.1| export membrane protein secD [Mycobacterium tuberculosis T85]
 gi|298495854|gb|EFI31148.1| export membrane protein secD [Mycobacterium tuberculosis 94_M4241A]
 gi|323718860|gb|EGB28016.1| protein-export membrane protein secD [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904201|gb|EGE51134.1| protein-export membrane protein secD [Mycobacterium tuberculosis
           W-148]
 gi|328458102|gb|AEB03525.1| preprotein translocase subunit secD [Mycobacterium tuberculosis KZN
           4207]
          Length = 573

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 117/539 (21%), Positives = 218/539 (40%), Gaps = 43/539 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +   ++  IG+ + +     +                LG+DL+GG+ + L     D  
Sbjct: 12  RYLSVFLVMLIGIYLLVFFTGDKHTAP-----------KLGIDLQGGTRVTLTARTPDGS 60

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQG 121
                 L      + + +   G+    +    + + ++    D     N+     L+++ 
Sbjct: 61  APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120

Query: 122 VNSKLNVDP---KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI---- 174
           V + +   P   +     +   +      +          + +   +      D      
Sbjct: 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180

Query: 175 -------------GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
                            +  ++  + RI  +    Q  ++  Q++    + +  +     
Sbjct: 181 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281
           +             +D     +     ISG  +  AT+  D +    VVD+ F    A  
Sbjct: 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300

Query: 282 FFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN---FTIETAGILAAMLRAG 338
           + + T  +IG   A  LD +V++AP I +AIP G+ QISG    FT  TA  LA +L+ G
Sbjct: 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 360

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
           SLP+     E + V A LG  S+  G  A   GL+L++++ ++ Y   GL+   S+  + 
Sbjct: 361 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 420

Query: 399 ILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
            +  A+L LL      TL L  IAG+++GIG   DS ++  ERI++E R+ +S   ++  
Sbjct: 421 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 480

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
           G++RA  TI   N    +A  VL+F   G V+GFA T+GL+ ++ +     +   ++  
Sbjct: 481 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYL 539



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 23/136 (16%)

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDK--------------------VVVYDRMRK 746
            LG      +  + + V A+L L+G  +N                      VV ++R++ 
Sbjct: 407 VLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKD 466

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++      SFR  + +         V  +   F++   +       +  FA  +    +
Sbjct: 467 EIRE---GRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTI 523

Query: 807 VAASSSIFIAAPILLF 822
           +       +  P++  
Sbjct: 524 LDLVVVFLVTWPLVYL 539


>gi|308232183|ref|ZP_07415198.2| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu001]
 gi|308369763|ref|ZP_07418962.2| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu002]
 gi|308371065|ref|ZP_07423710.2| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu003]
 gi|308372343|ref|ZP_07428310.2| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu004]
 gi|308373453|ref|ZP_07432371.2| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu005]
 gi|308374623|ref|ZP_07436768.2| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu006]
 gi|308375543|ref|ZP_07444282.2| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu007]
 gi|308377062|ref|ZP_07441014.2| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu008]
 gi|308378402|ref|ZP_07482477.2| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu009]
 gi|308379250|ref|ZP_07485636.2| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu010]
 gi|308380410|ref|ZP_07489856.2| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu011]
 gi|308214787|gb|EFO74186.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu001]
 gi|308326559|gb|EFP15410.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu002]
 gi|308329981|gb|EFP18832.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu003]
 gi|308333598|gb|EFP22449.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu004]
 gi|308337625|gb|EFP26476.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu005]
 gi|308341289|gb|EFP30140.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu006]
 gi|308345936|gb|EFP34787.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu007]
 gi|308349098|gb|EFP37949.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu008]
 gi|308352625|gb|EFP41476.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu009]
 gi|308357666|gb|EFP46517.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu010]
 gi|308361607|gb|EFP50458.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           SUMu011]
          Length = 566

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 117/539 (21%), Positives = 218/539 (40%), Gaps = 43/539 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +   ++  IG+ + +     +                LG+DL+GG+ + L     D  
Sbjct: 5   RYLSVFLVMLIGIYLLVFFTGDKHTAP-----------KLGIDLQGGTRVTLTARTPDGS 53

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQG 121
                 L      + + +   G+    +    + + ++    D     N+     L+++ 
Sbjct: 54  APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 113

Query: 122 VNSKLNVDP---KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI---- 174
           V + +   P   +     +   +      +          + +   +      D      
Sbjct: 114 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 173

Query: 175 -------------GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
                            +  ++  + RI  +    Q  ++  Q++    + +  +     
Sbjct: 174 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 233

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281
           +             +D     +     ISG  +  AT+  D +    VVD+ F    A  
Sbjct: 234 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 293

Query: 282 FFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN---FTIETAGILAAMLRAG 338
           + + T  +IG   A  LD +V++AP I +AIP G+ QISG    FT  TA  LA +L+ G
Sbjct: 294 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 353

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
           SLP+     E + V A LG  S+  G  A   GL+L++++ ++ Y   GL+   S+  + 
Sbjct: 354 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 413

Query: 399 ILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
            +  A+L LL      TL L  IAG+++GIG   DS ++  ERI++E R+ +S   ++  
Sbjct: 414 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 473

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
           G++RA  TI   N    +A  VL+F   G V+GFA T+GL+ ++ +     +   ++  
Sbjct: 474 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYL 532



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 23/136 (16%)

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDK--------------------VVVYDRMRK 746
            LG      +  + + V A+L L+G  +N                      VV ++R++ 
Sbjct: 400 VLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKD 459

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++      SFR  + +         V  +   F++   +       +  FA  +    +
Sbjct: 460 EIRE---GRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTI 516

Query: 807 VAASSSIFIAAPILLF 822
           +       +  P++  
Sbjct: 517 LDLVVVFLVTWPLVYL 532


>gi|163782417|ref|ZP_02177415.1| cation efflux (AcrB/AcrD/AcrF family) protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159882450|gb|EDP75956.1| cation efflux (AcrB/AcrD/AcrF family) protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 990

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/581 (10%), Positives = 151/581 (25%), Gaps = 44/581 (7%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L      +G+            +DRFP                    V +      V+ 
Sbjct: 1   MLMLSFVILGVYA-----YKNIAVDRFPDVDFPMVT---------ISTVYKGANPYVVDT 46

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    +E  + +      +       +++T+ F   +  +  A +V    Q    +L  
Sbjct: 47  TVTRVVEEDLASISGIDAIISKSYAGLSRVTVIFDLDKDIDVAAQEVRDIAQRAFRRLPQ 106

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                ++         I+    + D         S    +    +        +      
Sbjct: 107 GVDPPVVRKLNTSLAPIIAVLVHGDADYETV---SFFADKVVKREFERLRGVGEVHMGGF 163

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
               +    DP RL     T   +       +      +   +            +D  E
Sbjct: 164 RDRVMWIRIDPERLHARNLTVGDVIEAFKRNHVETPAGVIYSKDREYILRIVGKFKDASE 223

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           ++ + +                                            +         
Sbjct: 224 LNELVIRN------------------------GVRLSDVGGAEFSYEERRNAVRFNLKSA 259

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +++ +     E        LR  +       V          S +       +
Sbjct: 260 VALIIYKESKSNTVAAAERVWAKIEELRKIAPKGVKIDVNYDASVFIKRSINDAVHEIVV 319

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + L  +V+F+ +   ++ L+   +I ++++ T+ +L L G +L   S+  + + +G+ +
Sbjct: 320 GSLLTALVVFLFLGSVRFTLIPVSAIPISILGTVFVLQLTGNSLNTMSLLALAVAVGIVI 379

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D  I+V E I   N +      + + G       +  S  + ++  + + F  G     F
Sbjct: 380 DDAIVVLESIYRRNEEGLRGVQAAERGTRIVIFALLASTSSLIVIFLPVLFLKGPIGTFF 439

Query: 489 A---ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
               +++  +I +S   ++S    +   ++                 L    +       
Sbjct: 440 GVFTLSLITAIAVSFLVSVSFTPMLSARLVSSGHKNPFMRAYERFEELFDVALRWSLDHK 499

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                       +            + +  +G   +     
Sbjct: 500 LVVLAFSVGSVVVGFQLAKAVKKEFFPLVDEGRFIVRFETP 540



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 62/155 (40%), Gaps = 6/155 (3%)

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++   +          + TL L +    G   L     ++ +   ++ LIG    D V+ 
Sbjct: 838 MVLASLFESLLHPFTVMLTLPLAVAGVFGLLYLTNNSLSVPSYFGIILLIGIVARDSVLF 897

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
            +R+   ++L       R+ I K+  E L   + T++    ++LP+A     G  +    
Sbjct: 898 IERI---VQLRKEGEGVRESIMKARKERLRPILMTTLTIMFALLPVAFGLTEGAELRKPL 954

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           A+ +  G++ A   S+F+   +  F    R K  R
Sbjct: 955 ALSVIGGLITALPLSLFVIPTVYEFFEGLRLKLKR 989



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 88/247 (35%), Gaps = 17/247 (6%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++    V LS V     S +    + +        L+  +    ++VA    +    ++
Sbjct: 226 ELVIRNGVRLSDVGGAEFSYEERRNAVRFNLKSAVALIIYKESKSNTVAAAERVWAKIEE 285

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           + +I P     +         +  I   +  +++ ++   + +++      F L  ++ +
Sbjct: 286 LRKIAPKGVKIDVNYDASVFIKRSINDAVHEIVVGSLLTALVVFLFLGSVRFTLIPVSAI 345

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + I  T+    L G   N  ++ A+   +G  ++D +VV + +    +     +     
Sbjct: 346 PISILGTVFVLQLTGNSLNTMSLLALAVAVGIVIDDAIVVLESI---YRRNEEGLRGVQA 402

Query: 761 IDKSINETLGRSVY------TSMAAFISVLPMAVWG--GSVIGSFAIPMAFGIVVAASSS 812
            ++       R V       TS    I +  + + G  G+  G F + +   I V+   S
Sbjct: 403 AERG-----TRIVIFALLASTSSLIVIFLPVLFLKGPIGTFFGVFTLSLITAIAVSFLVS 457

Query: 813 IFIAAPI 819
           +     +
Sbjct: 458 VSFTPML 464


>gi|294339155|emb|CAZ87509.1| Multidrug resistance protein mdtC (Multidrug transporter mdtC)
           [Thiomonas sp. 3As]
          Length = 1034

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/519 (12%), Positives = 145/519 (27%), Gaps = 35/519 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P       +          +  +     + +   +    +     +     
Sbjct: 29  FRLLPVSPLPQVDFPTIV---------VNASMAGASPEVMAATVATPLERSLGTIAGISQ 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK-KNLLVTTTEKEISI 145
              S      ++ L F+ S+   + A +V   +      L      +         +  I
Sbjct: 80  MTSSSSLGSTRVILQFSLSKNINDAAREVQAAINAAIPLLPSGLTGRPTYKKMNPADAPI 139

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++       +    +  +   I     +I               L  +  E D  R+  +
Sbjct: 140 MILSLTSKSLSRGQMFDAGSTI--LAQKISQIAGIGSVTVGGAALPAVRVELDLPRVNGM 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                ++       N                             S  H     AN    T
Sbjct: 198 GLGLEQVRQAIASANVDTP--------------------KGAIDSATHRWQVGANDQLST 237

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    I                 + + L    +  +       Q I   +   +    +
Sbjct: 238 PQQYQHIVVGYRNGAPIRLDQIAQVYEGLQNDRNMGLANGQPSVQLIIYRQPGANIIDAV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E        L+A         +          S    + T  +   LV+ V+++ +   +
Sbjct: 298 EGVKAALPQLKASIPAAINITLMSDRTTTIRASLDEVEKTLILAVLLVIAVVWLFLRDWR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ L+++ T A + LL  +L   S+  +++  G  VD  I+V E I     + 
Sbjct: 358 ATLIPAIAVPLSLVGTFAAMWLLDYSLDNLSLMALIVATGFVVDDAIVVLENIMRHVEEG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
            S   +   G      T+   +I+ +   + + F G   G     FA+T+ ++I IS+  
Sbjct: 418 LSPLAAAFKGAREVGFTVLSMSISLVAVFIPVLFMGGIVGRLFHEFAVTLSVAIGISLLV 477

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           ++++   +    +R +   +      S +          
Sbjct: 478 SLTVTPMLASRWLRPQARPAHGAPKPSSWLERGWNHVHH 516



 Score = 85.5 bits (209), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 91/263 (34%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                 I +G     P+ L  +    E LQ               L+  +    + +   
Sbjct: 238 PQQYQHIVVGYRNGAPIRLDQIAQVYEGLQNDRNMGLANGQPSVQLIIYRQPGANIIDAV 297

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             ++    ++   +P +             R  + +    +I++ + ++  +W+  + W 
Sbjct: 298 EGVKAALPQLKASIPAAINITLMSDRTTTIRASLDEVEKTLILAVLLVIAVVWLFLRDWR 357

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L     + L +  T     L     +  ++ A++   G+ V+D +VV + +   M+  
Sbjct: 358 ATLIPAIAVPLSLVGTFAAMWLLDYSLDNLSLMALIVATGFVVDDAIVVLENI---MRHV 414

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
              +S      K   E     +  S++     +P+   GG V      FA+ ++  I ++
Sbjct: 415 EEGLSPLAAAFKGAREVGFTVLSMSISLVAVFIPVLFMGGIVGRLFHEFAVTLSVAIGIS 474

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
              S+ +   +       +A+ A
Sbjct: 475 LLVSLTVTPMLASRWLRPQARPA 497



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 79/200 (39%), Gaps = 6/200 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             +   +      I   S I        ++  + ++   + ++ +  A+ I + + ++   
Sbjct: 818  SIQTKIDDATAAIGLPSEIHGGFQGTAQLFSDTLKNEPLFIMAAIFAIYIVLGMLYESTL 877

Query: 693  -ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  ++TL       L    L   EF++ A+  V  LIG    + +++ D         
Sbjct: 878  HPLTILSTLPPAGLGALLALQLTHTEFSIIALIGVFLLIGIVKKNAILMVD--FALTAER 935

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                S RD I ++    L   + T++AA  + LP+A     G  +     I +A G++V+
Sbjct: 936  EHGASPRDAIYQAATLRLRPILMTTLAALGTALPLAFITGNGAELRQPLGISIAGGLIVS 995

Query: 809  ASSSIFIAAPILLFIYDWRA 828
             + +++    I L +   R 
Sbjct: 996  QALTLYTTPVIYLELDRLRR 1015


>gi|188591325|ref|YP_001795925.1| multidrug efflux system, subunit c [Cupriavidus taiwanensis LMG
           19424]
 gi|170938219|emb|CAP63205.1| multidrug efflux system, subunit C [Cupriavidus taiwanensis LMG
           19424]
          Length = 1099

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 69/635 (10%), Positives = 164/635 (25%), Gaps = 49/635 (7%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +     +        S      ++TL F  SR  +  A 
Sbjct: 47  VSASLPGASPETMAATVATPLERALGTIAGVTEITSSSSLGSTRVTLQFDLSRDIDGAAR 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    + L      N          + ++    +        +           +
Sbjct: 107 DVQAAINASRATLPTSLPNNPTYRKVNPADAPIMI-IALTSPTMTRGQLYDAASTILAQK 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   E   Q       L  +  E +P+ L     +   +       N ++          
Sbjct: 166 LSQVEGVGQVTIGGASLPAVRVELNPTALNNYGISLEDVRNTISATNANRPLGTLENASN 225

Query: 234 RDSD--------------------------------------------GNQYLVEDKVEI 249
                                                           G    V + V +
Sbjct: 226 NWQVYANDQAMKAEDYMPLIIRYATPGTYSSASAGALIASTANATASGGVSTKVVNGVTV 285

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           + +  +  T              S     A         N+   +  + +          
Sbjct: 286 TTLTTSSGTTTITSGATGGTSATSGPNSFAVPVRLRDVANVVDSVQDIRNAGSANGKPSV 345

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             + +     +   T++    +   L+          V          S    + T  I 
Sbjct: 346 LLVLNRSPGANIIETVDRVNEMLPNLQKMIPAAISMDVMMDRTPTIRASLREVEHTLMIS 405

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV++V+F+ +   +  L+   ++ +++I T +++ L G +L   S+  + +  G  VD
Sbjct: 406 VALVIMVVFVFLRNVRATLIPSVAVPVSLIGTFSVMYLAGFSLNNLSLMALTIATGFVVD 465

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVR 486
             I+V E I     +      +   G      T+   +++ +   + L   G   G   +
Sbjct: 466 DAIVVLENISRHIEEGMKPLAAALRGAREVGFTVLSMSLSLIAVFIPLLMMGGIVGRLFQ 525

Query: 487 GFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
            FAIT+ ++IL+S+  +++    M    +   +  K       +               +
Sbjct: 526 EFAITLSVAILVSLVVSLTTTPMMCARMLRPVEPEKQGRFFRATERMFQWLHDGYARSLS 585

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
               +   +   + +   L  +            Q        +      S        D
Sbjct: 586 TALRLSPLVWLVLIATIALNVYLYVIVPKGFFPQQDTGRLIGFIRADQATSFQAMRGKLD 645

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +    +   +    +  G      ++   +K 
Sbjct: 646 NFIKIVQSDPAVVNVTGFTGGSQRNTGQMFVTLKP 680



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 83/253 (32%), Gaps = 13/253 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            GG       N       +R     +                 V L             +
Sbjct: 302 TGGTSATSGPNSFAVPVRLRDVANVVDSVQDIRNAGSANGKPSVLLVLNRSPGANIIETV 361

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKW 690
           + V + +  +  +     +  V    +  +          + + ++ + M++++++R   
Sbjct: 362 DRVNEMLPNLQKMIPAAISMDVMMDRTPTIRASLREVEHTLMISVALVIMVVFVFLR-NV 420

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     + + +  T     L G   N  ++ A+    G+ V+D +VV + +    + 
Sbjct: 421 RATLIPSVAVPVSLIGTFSVMYLAGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRH 477

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               +       +   E     +  S++     +P+ + GG V      FAI ++  I+V
Sbjct: 478 IEEGMKPLAAALRGAREVGFTVLSMSLSLIAVFIPLLMMGGIVGRLFQEFAITLSVAILV 537

Query: 808 AASSSIFIAAPIL 820
           +   S+    P++
Sbjct: 538 SLVVSL-TTTPMM 549



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 91/214 (42%), Gaps = 6/214 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +  + ++  + + +++  I    T++     G K  ++ ++     ++ + I 
Sbjct: 868  TISFNLAEGTSLSQATDAINREMARIGAPETLRANFQGGAKAFQDSLKSQPALILAALIT 927

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L        +F++ A+  V+ LIG    + +
Sbjct: 928  IYIVLGVLYESYVHPLTILSTLPSAGVGALLALLASKTDFSIIALIGVILLIGIVKKNAI 987

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D            +S RD I ++        + T+MAA +  +P+A+    G  +  
Sbjct: 988  MMID--FAIDAERREGLSPRDAIYRACLLRFRPILMTTMAALLGAVPLALGRGDGAELRA 1045

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               I +  G+VV+   +++    + L +  WR K
Sbjct: 1046 PLGISIVGGLVVSQLLTLYTTPVVYLTLDRWRLK 1079


>gi|332708024|ref|ZP_08428020.1| protein-export membrane protein SecD [Lyngbya majuscula 3L]
 gi|332353206|gb|EGJ32750.1| protein-export membrane protein SecD [Lyngbya majuscula 3L]
          Length = 464

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 121/479 (25%), Positives = 209/479 (43%), Gaps = 64/479 (13%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
            + +  I LGLDL+GG+ L ++++      +     L      +   +   G+    ++ 
Sbjct: 21  VLVQIPIRLGLDLQGGAQLTIQINTTEEITEITAEQLAAVKTVIEGRVNALGVSESVVQT 80

Query: 94  IQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
           +  +++ +        +     +    Q       +  +  L V     +   +  +   
Sbjct: 81  VGKDQLLVQLPGVNDPQQAERVLGGTAQLDFLNQKIGTEAQLQVEQQVLQQLQLNQEVLR 140

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
           +     AI ++   I +    I                                 T   +
Sbjct: 141 NNGDGDAIAENQAAINRSNQAI------------------------LELFESSGLTGKNL 176

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
              +  P  +   +   +RF  +       +   +  +G  +                  
Sbjct: 177 QDARPQPLQTGGAWEVAIRFDSEGAQKFAELTKNIAGTGRSIGIFL-------------- 222

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                                  +++    + A      I  G A I+GNF  E+A   A
Sbjct: 223 ---------------------DNLLISAPSVAARYAENGISGGAAVITGNFDAESAYEFA 261

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
           A LR GSLP+ + IVE R VGA LG DSI +   A V GL+L+++FM++ Y   G++A+ 
Sbjct: 262 AQLRGGSLPLPVEIVENRTVGATLGRDSIQRSIYAAVVGLILVLIFMVLYYRLPGIIANI 321

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++ +  +LT+A  + LG TLTLP IAG +L IG+AVD+N+L+ ER REE R  ++++ S+
Sbjct: 322 ALSIYALLTIAAFAFLGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAGKTLYRSV 381

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           + GF RA+S+I D+ +T LIA  VLF+ G G V+GFA+T+G+ + ISMFTA++  R +M
Sbjct: 382 ESGFYRAFSSILDATVTTLIACAVLFWLGSGLVKGFAVTLGIGVGISMFTAVTCSRTLM 440



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 92/225 (40%), Gaps = 4/225 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L++L I   S      E           G+  A++      + +   +     I     V
Sbjct: 222 LDNLLISAPSVAARYAENGISGGAAVITGNFDAESAYEFAAQLRGGSLPLPVEIVENRTV 281

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ I++ I   ++  I +LI++ + ++    + A   L +    T+  FA  G+ 
Sbjct: 282 GATLGRDSIQRSIYAAVVGLILVLIFMVLYYRLP-GIIANIALSIYALLTIAAFAFLGVT 340

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      +    ++          +  ++
Sbjct: 341 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKTLYRSVESGFYRAFSSILDATV 397

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +   G  ++  FA+ +  G+ ++  +++  +  ++L 
Sbjct: 398 TTLIACAVLFWLGSGLVKGFAVTLGIGVGISMFTAVTCSRTLMLV 442


>gi|324006446|gb|EGB75665.1| RND transporter, hydrophobe/amphiphile efflux-1 family protein
           [Escherichia coli MS 57-2]
          Length = 1025

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/607 (11%), Positives = 168/607 (27%), Gaps = 44/607 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   I   G+L           +   P       +             L    
Sbjct: 10  RPVATILLSVAITLCGIL-----GFRMLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        E       Q    I   +    
Sbjct: 116 QSLLPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +   +       N  K          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDDTHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                 +   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T+++       L++         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EQTLVISVVLVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFF 479
             G  VD  I+V E I            +   G      T+   +++ +      +++  
Sbjct: 395 ATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
             G  +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++    
Sbjct: 455 LPGRLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRMLVALQQG 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R  GV +    ++     +      +     G +  G+ A++ +    
Sbjct: 515 YGKSLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQA 574

Query: 594 VRSNLES 600
           +R  L+ 
Sbjct: 575 MRGKLQD 581



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 803  TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 863  VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
            ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 923  MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G+V++   +++    + LF    R + +R
Sbjct: 981  PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRMRFSR 1017



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 50/144 (34%), Gaps = 7/144 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              +     + + +  T     L G   N  ++ A+    G+ V+D +VV + +    + 
Sbjct: 357 RATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDAIVVLENI---ARH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVIGSFAIPMAFGIVV 807
               +       +   E     +  S++        L M    G ++  FA+ ++  I +
Sbjct: 414 LEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLLREFAVTLSVAIGI 473

Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831
           +   S+    P++       +K  
Sbjct: 474 SLLVSL-TLTPMMCGWMLKASKPR 496


>gi|296117794|ref|ZP_06836377.1| protein-export membrane protein SecF [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295969025|gb|EFG82267.1| protein-export membrane protein SecF [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 378

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 132/319 (41%), Gaps = 11/319 (3%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    L  D     F+        I++   + +I  +   G    +DF+GG ++ +
Sbjct: 5   KTKISRMDRLYLDEGGFDFISRSKTWYSITVGLLVVAIAAIAIRGFTLSLDFEGGTKVSL 64

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A    + +V     ES  +     Q      +  + +  +             + ++  
Sbjct: 65  PAADLNEQAVSEVFQESTGVEPEQVQIVGSGDSATLEVNSERLSEEQADAARLAIYEEFE 124

Query: 644 EIVPL----STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + P             V       + ++ ++ +I+  +    Y+  R +   AL AI  
Sbjct: 125 PVNPSGEATPDAVGVSTVSESWGSTITQRMVIAMIVFLVIATAYVAFRLQRTMALAAIIA 184

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK--LYTTSISF 757
           LI D     G +ALFG+E +   +  +LT++ +S+ D V+V+D++ +N +      S ++
Sbjct: 185 LIADGIIIAGIYALFGMEVSPAVIIGLLTVLTFSIYDSVIVFDKVNENTEGITGQRSRTY 244

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSS 812
            +  + +IN+T+ RS+ TS+ + + ++ + V      G   +   A+    G++    SS
Sbjct: 245 AEQTNLAINQTVMRSISTSVISALPIIALFVVAVWMMGIGTLRDLALIQLIGVIEGIFSS 304

Query: 813 IFIAAPILLFIYDWRAKNA 831
           IF+A+P+++ + +   K  
Sbjct: 305 IFLASPLVVTLANRSKKIK 323


>gi|296135109|ref|YP_003642351.1| acriflavin resistance protein [Thiomonas intermedia K12]
 gi|295795231|gb|ADG30021.1| acriflavin resistance protein [Thiomonas intermedia K12]
          Length = 1034

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/519 (12%), Positives = 145/519 (27%), Gaps = 35/519 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P       +          +  +     + +   +    +     +     
Sbjct: 29  FRLLPVSPLPQVDFPTIV---------VNASMAGASPEVMAATVATPLERSLGTIAGISQ 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK-KNLLVTTTEKEISI 145
              S      ++ L F+ S+   + A +V   +      L      +         +  I
Sbjct: 80  MTSSSSLGSTRVILQFSLSKNINDAAREVQAAINAAIPLLPSGLTGRPTYKKMNPADAPI 139

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++       +    +  +   I     +I               L  +  E D  R+  +
Sbjct: 140 MILSLTSKSLSRGQMFDAGSTI--LAQKISQIAGIGSVTVGGAALPAVRVELDLPRVNGM 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                ++       N                             S  H     AN    T
Sbjct: 198 GLGLEQVRQAIASANVDTP--------------------KGAIDSATHRWQVGANDQLST 237

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    I                 + + L    +  +       Q I   +   +    +
Sbjct: 238 PQQYQHIVVGYRNGAPIRLDQIAQVYEGLQNDRNMGLANGQPSVQLIIYRQPGANIIDAV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E        L+A         +          S    + T  +   LV+ V+++ +   +
Sbjct: 298 EGVKAALPQLKASIPAAIDITLMSDRTTTIRASLDEVEKTLILAVLLVIAVVWLFLRDWR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ L+++ T A + LL  +L   S+  +++  G  VD  I+V E I     + 
Sbjct: 358 ATLIPAIAVPLSLVGTFAAMWLLDYSLDNLSLMALIVATGFVVDDAIVVLENIMRHVEEG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
            S   +   G      T+   +I+ +   + + F G   G     FA+T+ ++I IS+  
Sbjct: 418 LSPLAAAFKGAREVGFTVLSMSISLVAVFIPVLFMGGIVGRLFHEFAVTLSVAIGISLLV 477

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           ++++   +    +R +   +      S +          
Sbjct: 478 SLTVTPMLASRWLRPQARTAHSAPKPSSWLERGWNHVHH 516



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 91/263 (34%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                 I +G     P+ L  +    E LQ               L+  +    + +   
Sbjct: 238 PQQYQHIVVGYRNGAPIRLDQIAQVYEGLQNDRNMGLANGQPSVQLIIYRQPGANIIDAV 297

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             ++    ++   +P +             R  + +    +I++ + ++  +W+  + W 
Sbjct: 298 EGVKAALPQLKASIPAAIDITLMSDRTTTIRASLDEVEKTLILAVLLVIAVVWLFLRDWR 357

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L     + L +  T     L     +  ++ A++   G+ V+D +VV + +   M+  
Sbjct: 358 ATLIPAIAVPLSLVGTFAAMWLLDYSLDNLSLMALIVATGFVVDDAIVVLENI---MRHV 414

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
              +S      K   E     +  S++     +P+   GG V      FA+ ++  I ++
Sbjct: 415 EEGLSPLAAAFKGAREVGFTVLSMSISLVAVFIPVLFMGGIVGRLFHEFAVTLSVAIGIS 474

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
              S+ +   +       +A+ A
Sbjct: 475 LLVSLTVTPMLASRWLRPQARTA 497



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/200 (18%), Positives = 79/200 (39%), Gaps = 6/200 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             +   +      I   S I        ++  + ++   + ++ +  A+ I + + ++   
Sbjct: 818  SIQTKIDDATAAIGLPSEIHGGFQGTAQLFSDTLKNEPLFIMAAIFAIYIVLGMLYESTL 877

Query: 693  -ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  ++TL       L    L   EF++ A+  V  LIG    + +++ D         
Sbjct: 878  HPLTILSTLPPAGLGALLALQLTHTEFSIIALIGVFLLIGIVKKNAILMVD--FALTAER 935

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                S RD I ++    L   + T++AA  + LP+A     G  +     I +A G++V+
Sbjct: 936  EHGASPRDAIYQAATLRLRPILMTTLAALGTALPLAFITGNGAELRQPLGISIAGGLIVS 995

Query: 809  ASSSIFIAAPILLFIYDWRA 828
             + +++    I L +   R 
Sbjct: 996  QALTLYTTPVIYLELDRLRR 1015


>gi|327483059|gb|AEA77466.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Vibrio cholerae LMA3894-4]
          Length = 990

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/538 (12%), Positives = 162/538 (30%), Gaps = 28/538 (5%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D + GF+    ++  +               ++ IT++   +         V     
Sbjct: 8   ASADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTN 67

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L  + +   +  +T    +++      +++ S   + +  + R    Q+      
Sbjct: 68  SVRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNELASS--QITDYLERVVNPQLYAVNGV 125

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   +   L    DP+++  L  + A +       N           F+  +    
Sbjct: 126 SSIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSAD 185

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V    ++                      +                 +    +     
Sbjct: 186 TQVSTVEDLE--------------------SLVVKAEKGTVTRLGDIAKVTLAKSHDTYR 225

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                     A  +     +     +    +   L+          V   +  A   S  
Sbjct: 226 ASANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIH 285

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +
Sbjct: 286 EVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAM 345

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +    ++ +S F +  +G       +    +T       +   
Sbjct: 346 VLAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALM 405

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINPLSRFFLI 534
           G   G   + FA+T+  S+ +S   A+++   M   +           + ++ L      
Sbjct: 406 GGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTA 465

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +  + A    V         S+ +LF    +     +    + ++   P + +
Sbjct: 466 RYERMLTAVMAHRPVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNAN 523



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 79/791 (9%), Positives = 210/791 (26%), Gaps = 36/791 (4%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                    ++L S +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 183 SADTQVSTVEDLESLV--VKAEKGTVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 240

Query: 126 LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                  N+     E    +   + S   ++ +    +  +    E+I+  ++   I   
Sbjct: 241 APSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHEVIKTIVEAALIVLV 300

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 301 VITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 358

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                D+    G     A      +   PV+ ++           +     G        
Sbjct: 359 VLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGSLFKEFAL 418

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
               +  V      +    +               L+   L  ++    ER + A +   
Sbjct: 419 TLAGSVFVSGIVALTLSPMMCSKMLKANEAPNKFELKVHHLLDRMTARYERMLTAVMAHR 478

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
            +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 479 PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVIMLMGTGPSNANLDYLANTMDDVNKIL 538

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                +            N+     +    S   +     +    T+        +    
Sbjct: 539 SDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQATVTNRVGTLVQDIPGMAVTA-- 596

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            F        G  + +   I            A  +          +  +    F     
Sbjct: 597 -FQMPELPGAGSGLPIQFVITTPSNFESLFTIATDVLTEVKANPMFVYSDLDLNFDSATM 655

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
            I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 656 KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 715

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
           S       G +         + +   +  P  +   +  +  V    T +          
Sbjct: 716 SYYVRAADGKVIPLGSLVTIDVVAEPRSLPHFNQLNSATVGAVPAPGTAMGDAINWFENL 775

Query: 652 --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                    + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 776 ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLRDPLVIMVSVP 835

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L I   L   A      N+ +   ++TL+G      +++ +  ++        +S  + +
Sbjct: 836 LAICGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIEAV 893

Query: 762 DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
             +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 894 MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 953

Query: 819 ILLFIYDWRAK 829
           I  ++ +    
Sbjct: 954 IYSYLAEKHKP 964



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 83/244 (34%), Gaps = 7/244 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +     +             E            + +   + +  +  ++ + +P +   
Sbjct: 211 DIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEM 270

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N          E I + I  ++ +A+ +L+ I +        L  I T+ L +       
Sbjct: 271 NVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVM 330

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G  +NL  + A++  IG  V+D +VV + +    +      S          E    
Sbjct: 331 QMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGTREIAIP 387

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++       P+A+ G   GS+   FA+ +A  + V+   ++ ++  +   +     
Sbjct: 388 VIAMTLTLGAVYAPIALMGGITGSLFKEFALTLAGSVFVSGIVALTLSPMMCSKMLKANE 447

Query: 829 KNAR 832
              +
Sbjct: 448 APNK 451


>gi|326388020|ref|ZP_08209624.1| RND transporter, HAE1/HME family, permease protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207521|gb|EGD58334.1| RND transporter, HAE1/HME family, permease protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 1048

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/598 (12%), Positives = 166/598 (27%), Gaps = 45/598 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL+        Q  L   P                    V     
Sbjct: 27  RPVATTLLMVALLLAGLIA-----WGQLPLSALPQVDYPTIQ---------VRTVYPGAS 72

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + +TL F      +    +V   +   
Sbjct: 73  PDVIALTVTSPLERQFGQMPGLARMTSNSSSGASVVTLQFTLGVSLDVAEQEVQQSINAA 132

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NS L  D     +        + +++   +        E    + RQ  ++I        
Sbjct: 133 NSLLPSDLPTPPVYAKVNPADAPIIT-IGVSSKTRSLGEVEGIVERQFSNKIAQVSGVGL 191

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +   L     +   +       N++     F       +      
Sbjct: 192 VTLSGGQRPAVRIVANVQALANHGLSLETIRNAISNANSNMAKGSFDGETKSWTIDANDQ 251

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                       +                ++   +  V  G  
Sbjct: 252 LGSATD--------------------YRSLVVAWSNNAPVHLSDIASVEDGVENVRTGSW 291

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +   T+++       L A         V          S S  
Sbjct: 292 MNRQPAVIIDVQRQPGANVISTVDSIKGTLPDLEAQLPADIKVTVLTDRTEGIRASVSDV 351

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +   +  ++A  S+ L+++   A +  LG ++   ++  + +
Sbjct: 352 QFELVLAVLLVVLVIFLFLGSMRATMIAAISVPLSLVGAFAAMWALGFSINNLTLMALTI 411

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I          F +   G S    TI    ++ +   + L F G 
Sbjct: 412 ASGFVVDDAIVVIENIARHIETGMKPFDAALKGASEIGFTIISLTVSLVAVLIPLLFMGD 471

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID-------INPLSRFF 532
             G   R FAI++ ++I++S   A+++V  +   ++R +  +                  
Sbjct: 472 VVGRLFREFAISLAVTIVLSAVVALTVVPMLAARMLRPEHEERRFAVVDGVMHGFDKLAH 531

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                +     R+R      +    +  +         + +   G I+  V+A+  V 
Sbjct: 532 AYGRALGWVMQRSRLTLTVFAASLVLAGVLFWVIPKNLFPVQDTGQIRATVVASPDVS 589



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 54/140 (38%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                + A  ++ L +          G   N   + A+    G+ V+D +VV + +    
Sbjct: 372 SMRATMIAAISVPLSLVGAFAAMWALGFSINNLTLMALTIASGFVVDDAIVVIENI---A 428

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +   T +   D   K  +E     +  +++    ++P+   G   G +   FAI +A  I
Sbjct: 429 RHIETGMKPFDAALKGASEIGFTIISLTVSLVAVLIPLLFMGDVVGRLFREFAISLAVTI 488

Query: 806 VVAASSSIFIAAPILLFIYD 825
           V++A  ++ +   +   +  
Sbjct: 489 VLSAVVALTVVPMLAARMLR 508



 Score = 45.5 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 15/102 (14%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              ++  +V     R+              I ++        + T+ AA  + +PM     
Sbjct: 944  MMIDFAIVAM---REE------GHDPETAIREAALLRFRPIMMTTFAALFAAVPMIFGQG 994

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G  +     + +A G++++   ++F    I L     R + 
Sbjct: 995  MGHELRQPLGLAIAGGLILSQVLTLFTTPVIFLAFERMRERR 1036


>gi|187479511|ref|YP_787536.1| multidrug efflux system transmembrane protein [Bordetella avium
           197N]
 gi|115424098|emb|CAJ50651.1| multidrug efflux system transmembrane protein [Bordetella avium
           197N]
          Length = 1036

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/515 (11%), Positives = 144/515 (27%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+L           +   P                     L    
Sbjct: 10  RPVATTLLALAVVLAGILS-----FRLLPVAPLPQVDIPTI---------SVTASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +           Q   +ITL F  SR  +  A  V   +   
Sbjct: 56  PETMASSVATPLERSLGSIAGVTEMTSRSTQGSTRITLQFDLSRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    + N          + +++   +        +           ++       +
Sbjct: 116 RSLLPTSLRSNPTYHKANPSAAPIMT-LAMTSQTLTQGQLYDLASTVIAQKLSQVSGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +     P  L     +  ++       N  +                   
Sbjct: 175 VTVGGSSLPAVRVSLIPGALANRGVSLDQVRQTLANANAQRP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V  +        A+      +    +    +            +   +  +     
Sbjct: 217 --KGVLENDEFHWQIMASDQLSRAEQYRPLIVAWVDGAAVRLSDVATVEDSVEDLFQTGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +A  +   T++        L A        +V +    +   S    
Sbjct: 275 YNNEKAILLIVRRQADANIIETVDAVREQLPQLAALLPADVNLLVAQDRTPSIRASLHEA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+ + +   +  ++   ++ ++++ T  ++ L G TL   S+  +++
Sbjct: 335 ELTLLIAVGLVVMVVLLFLRRWRAAIIPSLAVPVSLVGTFCIMYLCGYTLNTISLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  S   +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVVENIMRHIEQGASPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA+T+  +I +S+  ++++   M   +
Sbjct: 455 VVGRLFREFAVTLSAAIGVSLVVSLTLTPMMCARL 489



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 81/238 (34%), Gaps = 11/238 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  +    +     +L      +            +VR Q           V E + +  
Sbjct: 254 VRLSDVATVEDSVEDLFQTGFYNNEKAIL-----LIVRRQADANIIETVDAVREQLPQLA 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +     +   +   P I   L    +  +I   + +++ +    +W  A+     + +
Sbjct: 309 ALLPADVNLLVAQDRTPSIRASLHEAELTLLIAVGLVVMVVLLFLRRWRAAIIPSLAVPV 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     L G   N  ++ A++   G+ V+D +VV + +   M+      S      
Sbjct: 369 SLVGTFCIMYLCGYTLNTISLMALIVATGFVVDDAIVVVENI---MRHIEQGASPMRAAL 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           +   E     +  S++     +P+ + GG V      FA+ ++  I V+   S+ +  
Sbjct: 426 RGSREVGFTVLSMSLSLVAVFIPILLMGGVVGRLFREFAVTLSAAIGVSLVVSLTLTP 483



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 92/282 (32%), Gaps = 11/282 (3%)

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             +    +   + +          +    + +     + V L+             +S Q 
Sbjct: 744  VMYGPLNQYHVVMGVDPRFAEDAESLKQLNVVAADGKTVPLAAFARLEVGNTPLSVSHQG 803

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                               A   +   V +       +              ++ + +  
Sbjct: 804  LFVADTISFSTAPGVSLEQATQAIDAAVARIGLPSDQIQAGFQGTAAE---LQKTLSRQP 860

Query: 671  VGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLT 728
              ++ + +AM I + + ++       I + +    I   L   AL   EF L A+  V  
Sbjct: 861  WLILAALVAMYIVLGMLYESLVHPLTILSTLPSAGIGALLALMAL-NTEFTLIALIGVFL 919

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ D   +  +     ++ R+ I ++        + T+MAA    LP+ +
Sbjct: 920  LIGIVKKNAIMMVDFALEAQRKE--KLAPREAIYQACLTRFRPIMMTTMAAIFGALPLML 977

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                G  +     I +  G+V++   +++    + L++  +R
Sbjct: 978  ATGAGVEMRRPLGITIVGGLVLSQILTLYTTPVVYLYLDRFR 1019


>gi|254693802|ref|ZP_05155630.1| Acriflavin resistance protein [Brucella abortus bv. 3 str. Tulya]
 gi|261214081|ref|ZP_05928362.1| acriflavin resistance protein [Brucella abortus bv. 3 str. Tulya]
 gi|260915688|gb|EEX82549.1| acriflavin resistance protein [Brucella abortus bv. 3 str. Tulya]
          Length = 1029

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 158/588 (26%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI   GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLSGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +     V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTDVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|238926106|ref|ZP_04657866.1| protein translocase subunit SecD [Selenomonas flueggei ATCC 43531]
 gi|238885996|gb|EEQ49634.1| protein translocase subunit SecD [Selenomonas flueggei ATCC 43531]
          Length = 409

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 147/388 (37%), Positives = 230/388 (59%), Gaps = 27/388 (6%)

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  L       + +        QV   A+ + + I+ +R++ +G++E  IQR G  R++I
Sbjct: 23  RQGLDLQGGTHVVLEAVDTEQAQVNDDAMNRVVAIMEKRVNALGLTEPIIQREGERRVII 82

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPG +DP    + +G TA + F                             E    ++G
Sbjct: 83  ELPGVKDPDAAIKTIGKTAMLEFR--------------------------DEEGNTVLTG 116

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             L  A A+ +P+T + VV++ F + GA++F ++T  N+G+ +A++LDG VLTAP + + 
Sbjct: 117 TDLKDAQASTNPQTGQNVVNLEFSDEGAQKFADLTMKNVGRTIAILLDGEVLTAPNVREP 176

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           I  G+A+I+G  T+E A  LA +LR+G+LP+K+ I+E R VG  LG DS  K   A   G
Sbjct: 177 ILGGRAEITGQKTLEEAQNLAVVLRSGALPVKVEIIETRTVGPTLGQDSKDKSQFAFAVG 236

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           L  +V+FMI  Y   G +AD ++    I+ L +L L+ ATLTLP +AGI+L IG+AVD+N
Sbjct: 237 LGAVVVFMIFFYHFSGFIADVALMAYTIMLLGILYLMDATLTLPGVAGIILSIGMAVDAN 296

Query: 432 ILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
           +L+ E  +EE +   +S+  ++D GF RA++TIFDSN+T LIA  VLFF G G +RGFAI
Sbjct: 297 VLIFEHFKEEYQINGKSLRLAMDAGFKRAFTTIFDSNVTTLIAAGVLFFLGTGTIRGFAI 356

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYK 518
           T+G+  ++SMFTAI++ + M+  +I  K
Sbjct: 357 TLGVGTILSMFTAITLTQFMLKLMINSK 384



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 69/170 (40%), Gaps = 3/170 (1%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++   K      +   A+++++   + +     A   L+      LG   L    
Sbjct: 218 GPTLGQDSKDKSQFAFAVGLGAVVVFMIFFYHFS-GFIADVALMAYTIMLLGILYLMDAT 276

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  VA ++  IG +V+  V++++  ++  ++     S R  +D            +++
Sbjct: 277 LTLPGVAGIILSIGMAVDANVLIFEHFKEEYQI--NGKSLRLAMDAGFKRAFTTIFDSNV 334

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              I+   +   G   I  FAI +  G +++  ++I +   +L  + + +
Sbjct: 335 TTLIAAGVLFFLGTGTIRGFAITLGVGTILSMFTAITLTQFMLKLMINSK 384



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/223 (11%), Positives = 70/223 (31%), Gaps = 15/223 (6%)

Query: 42  NRISLGLDLRGGSHLVLE-VDED--DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-K 97
           + I  GLDL+GG+H+VLE VD +     +  +      +   +   G+    +++    +
Sbjct: 20  SSIRQGLDLQGGTHVVLEAVDTEQAQVNDDAMNRVVAIMEKRVNALGLTEPIIQREGERR 79

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLN----------VDPKKNLLVTTTEKEISIVL 147
           + +     +  +     +                       D + +    T +  +++  
Sbjct: 80  VIIELPGVKDPDAAIKTIGKTAMLEFRDEEGNTVLTGTDLKDAQASTNPQTGQNVVNLEF 139

Query: 148 SQNNIDQVISHAIEQSMEIIRQRID-QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           S     +     ++     I   +D ++  + +  + +   R  I      + ++   ++
Sbjct: 140 SDEGAQKFADLTMKNVGRTIAILLDGEVLTAPNVREPILGGRAEITGQKTLEEAQNLAVV 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             +  +     +      G   G      S     +    V +
Sbjct: 200 LRSGALPVKVEIIETRTVGPTLGQDSKDKSQFAFAVGLGAVVV 242


>gi|163843355|ref|YP_001627759.1| acriflavin resistance protein [Brucella suis ATCC 23445]
 gi|163674078|gb|ABY38189.1| acriflavin resistance protein [Brucella suis ATCC 23445]
          Length = 1029

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 161/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QGIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDPVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 AFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT      +L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTLLGFIG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++        +   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTLLGFIGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|330502156|ref|YP_004379025.1| multidrug efflux protein [Pseudomonas mendocina NK-01]
 gi|328916442|gb|AEB57273.1| multidrug efflux protein [Pseudomonas mendocina NK-01]
          Length = 1018

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/528 (12%), Positives = 160/528 (30%), Gaps = 47/528 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G          + ++ ++P                   + +   
Sbjct: 9   RRPVLATVVSLLIVLLG-----FQAFSKLVIRQYPQMENAL-------------ITVTTA 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  +  +       S +Q  + I++        + +  ++  
Sbjct: 51  YPGANAETIQGYITQPLQQSLASAEGIDYMTSSSQQNLSTISIYARIGANSDRLFTELLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               V ++L  D +  +L        +++      D++ +   + +  + R    ++   
Sbjct: 111 KANEVKNQLPQDAEDPVLSKEAADASALMYVSFYSDELSN--PQITDYLSRVIQPKLATL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +       +  +    DP ++     T   ++      N          +++  S 
Sbjct: 169 PGMAEAQILGNQVFAMRLWLDPVKMAAYGVTAGDLNSAVRKYNFLSAAGEVKGQYVVTSI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                ++                           I     G  R        +    A  
Sbjct: 229 NASTDLKS--------------------VDAFGAIPVKTDGDTRVLVRDIARVEMGAANY 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                            G    +    I+        L A   P     +          
Sbjct: 269 DSISSFDGIPSVYIAIKGTPSANPLDVIKEVRNALPELEAQLPPNLKVAIAYDATLFIQA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    +V++V+F+ +   +  L+   +I L++I  L  + L+G ++ L ++
Sbjct: 329 SIDEVVKTLAEAVLIVIVVVFLFLGAFRSVLIPVITIPLSMIGVLFFMQLMGYSINLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E I     + ++ F +   G       +    IT       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENIHRHIEEGKTPFDAAIEGAREIAVPVVSMTITLAAVYAPI 448

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            F     G   + FA+T+  +++IS   A+++   M   ++R+++  S
Sbjct: 449 GFLEGLTGALFKEFALTLAGAVIISGIVALTLSPMMCAKLLRHEENPS 496



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L  + T+ L +   L F  L G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 FRSVLIPVITIPLSMIGVLFFMQLMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 +  D   +   E     V  ++       P+       G++   FA+ +A  ++
Sbjct: 412 HIEEGKTPFDAAIEGAREIAVPVVSMTITLAAVYAPIGFLEGLTGALFKEFALTLAGAVI 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ ++  +   +       + +
Sbjct: 472 ISGIVALTLSPMMCAKLLRHEENPSGL 498



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 71/221 (32%), Gaps = 13/221 (5%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N  +               +  + ++                  +    L     V   +
Sbjct: 797  NSAIIEGVAIVSQGEAIDTITAIAREEAPRGYSFDYAGASRQYIQEGSAL----FVTFAL 852

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI-EFNLTAVAAVLTLIGYS 733
            +   + + +  +F+ +   L  + T+ L I   L      G    N+     ++TLIG  
Sbjct: 853  ALAIIFLVLAAQFESFRDPLVILVTVPLSICGAL-IPIFLGFSTMNIYTQVGLVTLIGLI 911

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
                +++ +      +L    +  R+ I+++    L   + T+ A    ++P+      G
Sbjct: 912  SKHGILIVEFAN---QLRREGLPLREAIEEAAAIRLRPVLMTTAAMVFGMVPLIFATGAG 968

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                    + +A G+ V    ++F+   +   +    AK  
Sbjct: 969  AVSRFDIGLVIATGMSVGTLFTLFVLPCVYSLLAKPDAKPQ 1009


>gi|319900450|ref|YP_004160178.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides helcogenes P 36-108]
 gi|319415481|gb|ADV42592.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Bacteroides helcogenes P 36-108]
          Length = 1070

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/547 (12%), Positives = 152/547 (27%), Gaps = 43/547 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKK-EGI 86
              + ++P   P               + +        +  +       L   +   E +
Sbjct: 30  TLPISQYPDIAPPT-------------VSVSATYTGASSQTVLNSVIAPLEDQINGVENM 76

Query: 87  GVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
                    N    I + F      +  A  V   +      L  +  K  + T   +  
Sbjct: 77  MYMQSTAANNGTASINIYFKQGTDPDMAAVNVQNRVSMAQGLLPAEVTKVGVTTQKRQNS 136

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            +V+     +                 I QI   +   + +        +     P  + 
Sbjct: 137 MLVVFSIYDESDTHDIEFIENYAKINLIPQIQRVKGVGEAMVMG-QDYSMRIWLKPDIMA 195

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           Q     + +S      N       FG    R +   QY +  +  +              
Sbjct: 196 QYKLIPSDVSAALAEQNVEAAPGQFGE---RGNQTFQYTIRYRGRL-------------Q 239

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
           +  +    +                ++            +        I    A  +   
Sbjct: 240 QQTEFENIVIKALPDGEVLRLKDIADVQLGRLSYSLNNKVNGHNAVTCIVFQMAGSNATQ 299

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           TI     +               +          S      T      LV IV+++ +  
Sbjct: 300 TIAEIENMLKETSDTLPAGLKVNISLNANDFLFASIHEVLKTLIEAFILVFIVVYIFLQD 359

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  L+   +I + +I T  +LSL+G ++ L ++  +VL I + VD  I+V E +  +  
Sbjct: 360 LRSTLIPAIAIPVALIGTFFVLSLIGFSINLLTLCAMVLAIAIVVDDAIVVVEGVHAKLD 419

Query: 444 KNQ-SVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
           +   S   +     +    A  +I    ++  I    +    G   R F +TM ++I +S
Sbjct: 420 QGYKSAKLASIDAMNELGGAIVSITLVMMSVFIPVSFMSGTAGTFYRQFGLTMAIAIGLS 479

Query: 500 MFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
              A+++  A+   +      + + KS  I+     F       ++  + R         
Sbjct: 480 ALNALTLSPALCALLLKPHEEHGEKKSTLISRFHTAFNTAYDTVLKKYKKRVLFFIQKKW 539

Query: 556 FSICSIC 562
            +   + 
Sbjct: 540 LTFGLVG 546



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/310 (10%), Positives = 87/310 (28%), Gaps = 28/310 (9%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                       +         ++     N  ++ +    + V     +       N++ +
Sbjct: 748  MQGYYGGLYASNFNRFGKMYRVMVQADPNSRVNLESLQNIKVRNGNDMAPISQFMNIKKV 807

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
               DI  +        ++    +   S      +  V K+         +        + 
Sbjct: 808  YGPDIISRFNLYTSMKVMVSPAEGYTSGQALAAIAEVAKEDLPAGFGYELGGMAREEAES 867

Query: 662  SRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALF 714
            S         G+I     + +Y+ +      +   L  + +    L+       G  A+ 
Sbjct: 868  SGSTT-----GLIFVLCFVFVYLLLSAQYESYILPLSVLLSIPFGLLGSFLFVNGMSAIG 922

Query: 715  GIEF----------NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             I            ++    A++ L+G    + +++ +     +      +S        
Sbjct: 923  NISVMKMIMGSMSNDIYMQIALIMLMGLLAKNAILIVEFA---LDRRKMGMSITWAAVLG 979

Query: 765  INETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILL 821
                L   + TS+A  + ++P+ +  G+              G+++     IF+   + +
Sbjct: 980  AAARLRPILMTSLAMIVGLIPLMMASGAGAHGNRTLGTSAIGGMLIGMVLQIFVVPALFV 1039

Query: 822  FIYDWRAKNA 831
                 + K  
Sbjct: 1040 AFQYLQEKFK 1049



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 86/237 (36%), Gaps = 6/237 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +           ++ +         +  Q    ++      +E + K+ ++ +P     
Sbjct: 262 DIADVQLGRLSYSLNNKVNGHNAVTCIVFQMAGSNATQTIAEIENMLKETSDTLPAGLKV 321

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N  +         I + +  +I + I + I ++I        L     + + +  T    
Sbjct: 322 NISLNANDFLFASIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPAIAIPVALIGTFFVL 381

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +L G   NL  + A++  I   V+D +VV + +   +     S     +   ++NE  G 
Sbjct: 382 SLIGFSINLLTLCAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSAKLASI--DAMNELGGA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V  ++      +P++   G+       F + MA  I ++A +++ ++  +   +  
Sbjct: 440 IVSITLVMMSVFIPVSFMSGTAGTFYRQFGLTMAIAIGLSALNALTLSPALCALLLK 496


>gi|315656673|ref|ZP_07909560.1| protein-export membrane protein SecD [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315492628|gb|EFU82232.1| protein-export membrane protein SecD [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 722

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 118/728 (16%), Positives = 233/728 (32%), Gaps = 98/728 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL--- 58
           +N     +++  +  + L   L      S     P         L +DL GG+ L+L   
Sbjct: 7   KNKALRTLIFFAVIVVALAGTLVGSTIFSNGSYAP--------KLAIDLEGGTQLILTPK 58

Query: 59  --EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADS---------- 105
             E       +  ++   + +R  +   G+    + R  Q  I++    +          
Sbjct: 59  NTEAKAKAISDADIEQAIEVIRQRIDASGVAEAEIARNGQENISVGIPGNPSEETLALIQ 118

Query: 106 ---------------------RFKENIADKVTLFLQGVNSKLNV-----DPKKNLLVTTT 139
                                   + +  ++T                   +    V   
Sbjct: 119 QSAVMRFRTVLLSAPGNATNNEDPQALLGQLTGAAAPAGQGQPAAGETGGQQTQTTVGEG 178

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              ++I  S           +  S +            +              +P ++  
Sbjct: 179 NNTVTIPPSAPTEKGKTQSLVLNSTDPSATPEPTSNPGKPAPTPAAKQHPSAAIPFDELM 238

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKK----------------------GFMFGVRFLRDSD 237
            +  +   T A  S       +                                     +
Sbjct: 239 KQAEKYPDTPAGESKVINDRKHITVRDMFIFNHLDCTDPASLKGGSLDDPKKNLVACSKE 298

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTH-----KPVVDISFDEMGARRFFEV------- 285
           G +  +     +SG  L  A++            +  V +  D  GA++F  V       
Sbjct: 299 GYEKYILGPEVLSGTDLVSASSGMGTNQQGNATGQWEVALKLDADGAKKFDAVAKVLYPN 358

Query: 286 -----TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
                 R+      A+VLD  V++AP +N     G A ISG+ T E++  LA  L+ GSL
Sbjct: 359 QNQGSNRNPDNNRFAIVLDSLVVSAPGVNAPAFGGSASISGSLTRESSATLANQLQFGSL 418

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P+      ++++ A LG + +  G  A + GL+L+VL+++  Y     +A  S+ L   +
Sbjct: 419 PLNFEQQSKQSISATLGGEHLKVGFYAAIVGLILVVLYLLQQYHALAGLATASLLLAGGI 478

Query: 401 TLALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
               +++L  ++    +L  + G+++ +G+ +DS I+  ERIR+E R  + +  +++ G+
Sbjct: 479 VYLAVAILSWSMGYRLSLAGVVGLIVAVGVTMDSFIIYFERIRDEVRDGKPLATAVETGW 538

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           +RA  TI  S+I  ++A VVL+    G V+GFA T+GL+ L+ +         MM  +I+
Sbjct: 539 NRAKRTIVVSDIVNIVAAVVLYVLAVGGVQGFAFTLGLTTLVDLGIIFLFTHPMMSLLIK 598

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
            +               +       +MR+          FS               +  +
Sbjct: 599 TRYFGEGRKFSGLDPLHLGASSDRIYMRSTATAT-----FSRKKKSAQKVASPTISLARQ 653

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
               L        D +  ++                                       E
Sbjct: 654 KAGLLQADEEDTADTAATQNANLESDTPATEPAAETSSTESQSETAKSDESGEDTASKDE 713

Query: 637 MVKKKITE 644
             + +   
Sbjct: 714 PTQTEEDA 721



 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 70/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD---I 704
               Q+ + +   +  E ++ G    I+  I +++Y+  ++     L A  +L+L    +
Sbjct: 421 NFEQQSKQSISATLGGEHLKVGFYAAIVGLILVVLYLLQQYHALAGL-ATASLLLAGGIV 479

Query: 705 TKTLGFFAL-FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +   +   G   +L  V  ++  +G +++  ++ ++R+R  ++           ++ 
Sbjct: 480 YLAVAILSWSMGYRLSLAGVVGLIVAVGVTMDSFIIYFERIRDEVRD---GKPLATAVET 536

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             N      V + +   ++ + + V     +  FA  +    +V          P++  +
Sbjct: 537 GWNRAKRTIVVSDIVNIVAAVVLYVLAVGGVQGFAFTLGLTTLVDLGIIFLFTHPMMSLL 596

Query: 824 YDWR 827
              R
Sbjct: 597 IKTR 600


>gi|255533589|ref|YP_003093961.1| acriflavin resistance protein [Pedobacter heparinus DSM 2366]
 gi|255346573|gb|ACU05899.1| acriflavin resistance protein [Pedobacter heparinus DSM 2366]
          Length = 1063

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/696 (10%), Positives = 190/696 (27%), Gaps = 53/696 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++++ +  +GLL            +  P                    +    
Sbjct: 9   KRPTLVIVVFTALTLMGLLS-----YFSLSYELLPKFSNNVV---------SISTIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S L+          +  + +T++  D    +   +     +  
Sbjct: 55  SPNEVENTVTKKIEDAVSSLENVKKINSVSYESLSVVTVTLTDKADVDLSLNDAQRKINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  + K   L   +  ++ ++                   I ++    +       
Sbjct: 115 ILADLPEEVKPPSLNKFSLDDLPVITM---SASAKMDDATFYDLIDKRIAPVLSRVNGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D  +++    +  ++    +                     N  
Sbjct: 172 QVTLVGGQEREIEVGLDADKIQGYGLSVPQIQQAILTS-------------------NLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V+ +   +    +       +    +        +       ++      V    
Sbjct: 213 FPTGSVKTNSEDILIRLSGKYKNVDELRNLVVATSKTGAQIRLSDVADVQDAQKEVEKIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL-NIVEERNVGADLGSDS 360
            +            +   +     +    + A L        L   +   +    L S  
Sbjct: 273 RIDRKGAIAIQIIKQTDANAVEVSKQMHKVIANLMQDYKTNGLDIKIVNDSSIFTLESAD 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV  V+   +   +   +   SI  ++I T   +SL G TL L S+ G+
Sbjct: 333 AVIHDLILAIILVAFVMLFFLHSLRNAAIVMVSIPASLIATFIGISLFGYTLNLMSLLGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I       ++   +     S    T+    +  ++    +   
Sbjct: 393 SLVVGILVDDAIVVLENIYRHMEMGKNRVRAAFDATSEIGFTVVSITLVIVVVFFPIAVS 452

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFII--RYKKMKSIDINPLSRFFLIP 535
            G     +R F + + ++ L+S+  + +IV  +          + K+I    +  F    
Sbjct: 453 TGLVSNILRQFCVVVIIATLLSLVASFTIVPLLSSRFGKLERIEGKNIFGRFILWFEKQL 512

Query: 536 DCIAIQFMRARFWGVGISILFS----------ICSICLLFTHGLNYGIDFKGGIQLGVLA 585
               +       W +    +                   F     +    KG   + +  
Sbjct: 513 HTFTVWITGILTWTLRNKAVTIIGVFLLLFSSCGLTIGGFIGTEFFPKSDKGEFLVQIEL 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +   L       +  +    +          + +     G + A     E+  K +   
Sbjct: 573 PKDASLEKTNQFTQKAEEFLSTKPEITQMITTVGQASGDFGGTQATAYKSEINVKLVDRK 632

Query: 646 V-PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                +      V  +++R L+   +  V IS + +
Sbjct: 633 DRKDESSIYATKVSRELARHLVGANVKTVPISILGI 668



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 86/262 (32%), Gaps = 11/262 (4%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             L V  ++      +    +         +    ++   + +Q           V + +
Sbjct: 240 RNLVVATSKTGAQIRLSDVADVQDAQKEVEKIARIDRKGAIAIQIIKQTDANAVEVSKQM 299

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI----ISAIAM-LIYIWIRFKWYFA 693
            K I  ++        +I     S     +    VI    ++ I +  + ++       A
Sbjct: 300 HKVIANLMQDYKTNGLDIKIVNDSSIFTLESADAVIHDLILAIILVAFVMLFFLHSLRNA 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
              + ++   +  T    +LFG   NL ++  +  ++G  V+D +VV + +    +    
Sbjct: 360 AIVMVSIPASLIATFIGISLFGYTLNLMSLLGLSLVVGILVDDAIVVLENI---YRHMEM 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAAS 810
             +       + +E     V  ++   +   P+AV  G   +++  F + +    +++  
Sbjct: 417 GKNRVRAAFDATSEIGFTVVSITLVIVVVFFPIAVSTGLVSNILRQFCVVVIIATLLSLV 476

Query: 811 SSIFIAAPILLFIYDWRAKNAR 832
           +S  I   +            +
Sbjct: 477 ASFTIVPLLSSRFGKLERIEGK 498



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/274 (11%), Positives = 85/274 (31%), Gaps = 9/274 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                  +     N          + V AN         ++++         +        
Sbjct: 757  YEYDINIRYQAFNRKNIDDVRNLIFVNANGQQIKLSQFADIKEGAGPSQLERKDKSTSVT 816

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI--VGVII 675
            +                   +++   E      +    + G     +    G   + ++ 
Sbjct: 817  VKAQSIGRPTGTVVAEFGAKLEQLEKEGKLKKPVGVNYVWGGDQENQSEGFGTLGIALLS 876

Query: 676  SAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            S I + LI + +   + + L  + ++ L I   L   AL      +  +  ++ LIG   
Sbjct: 877  SIILVYLIMVALYDSFIYPLVVMFSIPLSIIGALLALALANQSLGIFTILGLIMLIGLVA 936

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGG 791
             + +++ D      ++     +  + +  + +  L   + T++A  I +LP+A+    G 
Sbjct: 937  KNAIILVDF---TNQMKAEGKTTHEALILANHARLRPILMTTIAMVIGMLPIALASGAGA 993

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  A  +  G+  +   ++ +   +     +
Sbjct: 994  EWKNGLAWVIVGGLTSSLFLTLIVVPVMYQVFDN 1027


>gi|170730660|ref|YP_001776093.1| acriflavin resistance protein [Xylella fastidiosa M12]
 gi|167965453|gb|ACA12463.1| acriflavin resistance protein [Xylella fastidiosa M12]
          Length = 1032

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/584 (11%), Positives = 154/584 (26%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  +GL+  L   +      + P    + R   G D            
Sbjct: 9   KRPIGTSLLAIGVFVLGLICYLQLSVAPLPKFQIPVIFVEAR-QAGAD------------ 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        S  +  + + L F  +R  ++ A  V   +  
Sbjct: 56  -ASTMASTVTAPLERYLGQIPGIKRMRSSSSESNSNVFLLFQSNRNIDSAAQDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L               +  I+      D     A              +   +   
Sbjct: 115 VQVDLPSGMLPPSYEKANPNDDPIIALALTSDTQSMDA--LYNVADSLLAQHLRQIQGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +  + D   L  L  T  ++       N +    +              
Sbjct: 173 SVDIVGASTPAVRVDVDMHALNALGLTMDQLQNAVRAANITSPTGLLSNDTRTTEILLNS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                       +   +   R         +           
Sbjct: 233 TISKAAD-------------------FAQLVIATQPNGRIVRLSDIAQVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L     P  +      +      S   
Sbjct: 274 WFNHKRAVVMYVFLRTGANVVETVDRVKAELPTLHTYLPPGTVLTPYFDHTPTIRASLYE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      ++A   + L++     ++  L  TL   ++  +V
Sbjct: 334 IQTTLIISLAMVMLTMALFLRRLAPTVIAAAIVPLSLAGAAIVMYALDFTLNNVTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG  VD  I++ E I        S   +   G     STI    ++ ++      F  
Sbjct: 394 IAIGFVVDDAIVMIENISRHLNTGMSPLEAALTGAREIGSTIVSITVSLVVVFAPFLFDH 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F IT+  +I+ISM  ++++  A+    +    +        +    +   I
Sbjct: 454 GMIGTLFGEFGITLVAAIIISMLVSLTLTPALCSRFLSAHVVPEKSNGIGAWLERMYLRI 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +  A  + +  ++L ++  + L+    +  G   KG     
Sbjct: 514 LRLYTVALDFSLRHALLLALTPLLLIVLTVMLAGAISKGTFPSQ 557



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 57/153 (37%), Gaps = 11/153 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +IIS   +++ + +  +          ++ L +              N   + A++  IG
Sbjct: 338 LIISLAMVMLTMALFLRRLAPTVIAAAIVPLSLAGAAIVMYALDFTLNNVTLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA-FISVLPMAVWG 790
           + V+D +V+ + +    +   T +S  +       E     V  S+    + V    ++ 
Sbjct: 398 FVVDDAIVMIENI---SRHLNTGMSPLEAALTGAREIGSTIV--SITVSLVVVFAPFLFD 452

Query: 791 GSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
             +I    G F I +   I+++   S+ +   +
Sbjct: 453 HGMIGTLFGEFGITLVAAIIISMLVSLTLTPAL 485



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 78/249 (31%), Gaps = 11/249 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               + V ++ +   +  L    I   N     +    L        A+  +   +K    
Sbjct: 778  RNGKMVPITAIAHQVPGLNPPQIKHDNQYTTMDLSYNLSPGVSIGEAEAIIDATIKGLRL 837

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   I             L+   ++ V I          +       +  ++TL   
Sbjct: 838  PGDIRVAIAEDNDFTNDQMNILLLATLIAVYIVLG------MLYENLIHPITILSTLPAA 891

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L    L   E +  ++ A++ LIG    + +++ D     +      +     + +
Sbjct: 892  GMGALLALYLSHTELSAISMIALILLIGIVKKNAIMMID--FALVAQRERGLEPHAAVRE 949

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +        + TSM A ++ +P+A+    G  +     I M  G++++ S ++     + 
Sbjct: 950  ASIVRFRPIMMTSMVAILAAMPLAISVGEGAELRRPLGIAMIGGLLISQSLTLLSTPALY 1009

Query: 821  LFIYDWRAK 829
            +       +
Sbjct: 1010 VIFSCLSQR 1018


>gi|209518899|ref|ZP_03267711.1| acriflavin resistance protein [Burkholderia sp. H160]
 gi|209500701|gb|EEA00745.1| acriflavin resistance protein [Burkholderia sp. H160]
          Length = 1105

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/546 (13%), Positives = 148/546 (27%), Gaps = 38/546 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G L        +  +   P+      +             +   
Sbjct: 9   RRPVATTLLAIAILISGTL-----GYFRMPVAPLPNIAFPVIV---------VQANMAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +              + I + F   R     A  V   +Q 
Sbjct: 55  SPNIMASTVAEPLERRLATIADVEELTSISYVGSSLIIVEFGLKRDINGAARDVEAAIQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    + N          + ++   ++        +           Q+   +   
Sbjct: 115 ARADLPTTLRSNPSYRQYNPADAPIMV-LSLTSDTLTKAQLYDSADSVIQQQLSQVQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +  E  P +L         +       N         V           
Sbjct: 174 QITLGGGALPSVRVELQPGKLNSYGVGMEDVRAAISAANADSAKGHLDV----------- 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G      T+N       P  D+                 +      + +  
Sbjct: 223 ---------GDQRYVVTSNDQITHAAPYRDLVVAYRNGAPVQLRDVAQVRDSNENIRNAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I       +   T++    +   + A         V      +   S S 
Sbjct: 274 LFNGKSAILVIVYPMPGSNVVSTVQQIRNVLPSIEATLPKSVNVDVAIDRSQSVTSSVSD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV+ V+F+ +   +  LV   ++ L+++ T   + LLG ++   S+  + 
Sbjct: 334 TERTLFLAVLLVVGVVFIFLQSPRATLVPAVALPLSIVGTFGPMYLLGYSIDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-IFDSNITALIATVVLFFF 480
           +G G  VD  ++V E +        S   +   G      T I  S     +   ++ F 
Sbjct: 394 IGTGFVVDDAVVVLENVVRHMELGLSPKEAALKGAGEVGFTVISMSLSLIAVFLPIILFP 453

Query: 481 GGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FAIT+ ++ILIS+  ++++  AM  +++                    D  
Sbjct: 454 GIVGLMFHEFAITLSIAILISLVISLTVTPAMCAYVLSRNNAGHSKARWAQWIERQFDRF 513

Query: 539 AIQFMR 544
              + R
Sbjct: 514 KDVYAR 519



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 57/140 (40%), Gaps = 6/140 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     L L I  T G   L G   +  ++ A+    G+ V+D VVV + +   ++ 
Sbjct: 357 RATLVPAVALPLSIVGTFGPMYLLGYSIDNLSLMALTIGTGFVVDDAVVVLENV---VRH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               +S ++   K   E     +  S++     LP+ ++ G V      FAI ++  I++
Sbjct: 414 MELGLSPKEAALKGAGEVGFTVISMSLSLIAVFLPIILFPGIVGLMFHEFAITLSIAILI 473

Query: 808 AASSSIFIAAPILLFIYDWR 827
           +   S+ +   +  ++    
Sbjct: 474 SLVISLTVTPAMCAYVLSRN 493



 Score = 43.9 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 42/242 (17%), Positives = 95/242 (39%), Gaps = 8/242 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L S      S Q           + +      + ++    + + I EI   ++I  + 
Sbjct: 847  SVLTSYSNSHTSTQVNHQSGLVAATISFNLPAGGSLSQAGAAINETIREIGMPASIHGSF 906

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFAL 713
                    + +    + ++ +   + I + + ++       I + +    I  TL    +
Sbjct: 907  AGAAAAYSQSLGVVPLLILAALGVVYIVLGVLYESSIHPLTILSTLPSAGIGATLALL-I 965

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            FGI F++ A+  ++ LIG    + +++ D            +  RD I  +    L   +
Sbjct: 966  FGIPFSVIAMIGIILLIGIVKKNGIMMVD--VAIQLQRQEQMPARDAIHAAALIRLRPIM 1023

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+ AA +  +P+A+    GGS+     I +  G++++   +++    I L++   RA+ 
Sbjct: 1024 MTTFAAVLGAVPLAIGIGQGGSLRQPLGITVMGGLILSQMFTLYTTPVIYLYLDRLRARL 1083

Query: 831  AR 832
             R
Sbjct: 1084 VR 1085


>gi|86356944|ref|YP_468836.1| AcrB/AcrD/AcrF family multidrug efflux protein [Rhizobium etli CFN
           42]
 gi|86281046|gb|ABC90109.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family [Rhizobium etli CFN 42]
          Length = 1041

 Score =  142 bits (357), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/584 (11%), Positives = 159/584 (27%), Gaps = 40/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +   GL            +   P       I+            L   
Sbjct: 8   QRPVATTLLAIGVILAGLA-----GYRLVPVAALPQVDFPT-IN--------VSAQLSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +     +    +        S       I L F  +R  +  A  V   +  
Sbjct: 54  SPQTMATSVATPLIKQFETIPGISEISASSSLGNTSIVLQFDLNRDIDAAAADVQAAISH 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  +         T      ++L     + +    +++  E I      +      
Sbjct: 114 ATRQLPDNLTTPPSYRKTNPADAPVMLLSVQSNTMPRSKLDEIAEDI--ISPSLSTLPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  E DP+RL         ++      N+ +                 
Sbjct: 172 AQVSVYGAQTYAVRVEVDPNRLLTRGIGIDTVNKALAAANSQQPVGTLQ----------- 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    +       TAN      +    +                ++   +     G
Sbjct: 221 ---------NNSQSMTITANTQRTNAEQFRSLVIANPNGAPIHLGDVADVQDGVENQYTG 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    ++        L A        +V          + +
Sbjct: 272 SWYDGQRGIILAIQRQPDANTVDVVDAINAKLPQLHAEIPASVTTVVMNDAAKPIRAAIA 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +  GLV++V+++   +    ++   ++ L++I T  ++ +LG ++   S+ G+
Sbjct: 332 DVKFTLFLTIGLVVLVIYLFTGHATATIIPGLAVPLSLISTFGMMYVLGYSIDNISLLGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL VD  I++ E I     +   V  +   G      TI   +++ +   + +   
Sbjct: 392 TLAVGLVVDDAIVMLENILRHIEEGMPVREAAIKGAGEVSYTIISMSVSLIAVFIPILLM 451

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG   R    F + + ++I+ S   ++++   +   +        + I      F     
Sbjct: 452 GGVVGRVFNEFGMVVAIAIISSAIVSLTVTPMLGSRLSNNHSRPPLLIRIFDAGFERTLS 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              + +          +   + S+ L     +     F     +
Sbjct: 512 GYDRAVGWCLRHRVTILGVFLGSVALTIYFFMTLPTSFFPQEDI 555



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 83/232 (35%), Gaps = 12/232 (5%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +     +  +     +    + L  Q         V++ +  K+ ++        T 
Sbjct: 257 DVADVQDGVENQYTGSWYDGQRGIILAIQRQPDANTVDVVDAINAKLPQLHAEIPASVTT 316

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +V    ++ +       K  + + I  + ++IY+         +     + L +  T G 
Sbjct: 317 VVMNDAAKPIRAAIADVKFTLFLTIGLVVLVIYL-FTGHATATIIPGLAVPLSLISTFGM 375

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G   +  ++  +   +G  V+D +V+ + +   ++     +  R+   K   E   
Sbjct: 376 MYVLGYSIDNISLLGLTLAVGLVVDDAIVMLENI---LRHIEEGMPVREAAIKGAGEVSY 432

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
             +  S++     +P+ + GG V      F + +A  I+ +A  S+ +   +
Sbjct: 433 TIISMSVSLIAVFIPILLMGGVVGRVFNEFGMVVAIAIISSAIVSLTVTPML 484



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 94/267 (35%), Gaps = 6/267 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                +    +       +         V  SN   +Q            +     + +  
Sbjct: 750  IVEYDTSKPWDDQKLAEIRVASSNGSLVPLSNFAHVQRTTGPVTINQTGQLVSTTVSFNL 809

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + V+ +     + +   EI   + +  +     +I ++        ++ + + + + + 
Sbjct: 810  PEGVSLSDATAAIDEIKKEISLPADVFTSYGGTAEIFQQSQGNTPYLILAAVLTIYVVLG 869

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++ +   L  ++ L       L    + G + ++ A+  +L LIG    + +++ D  
Sbjct: 870  VLYESFIHPLTILSGLPAAAFGALLALKIMGFDLSIIALIGLLMLIGIVKKNAIMMIDVA 929

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPM 801
             + M+  TT       I ++        + T+  A +  LP+A+  G    +     I +
Sbjct: 930  VETMR--TTGEKATAAIHEACVRRFRPIMMTTFCALLGALPIALGTGASSELRQPLGIAV 987

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRA 828
              G+VV+   ++FI   I + +  +  
Sbjct: 988  VGGLVVSQLLTLFITPVIFVEMDRFGQ 1014


>gi|325917468|ref|ZP_08179677.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937]
 gi|325536342|gb|EGD08129.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937]
          Length = 1133

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/540 (13%), Positives = 153/540 (28%), Gaps = 51/540 (9%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           ++   +   GL+      L    ++  P                             +  
Sbjct: 1   MITVTMLLFGLIA-----LRSLKVNLLPDLSYPTLT---------VRTEYTGAAPAEIET 46

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    +E    +K         R  Q+ + L FA     +  + +V   ++ +   L +
Sbjct: 47  LVTEPVEEAVGVVKNLRKLKSISRTGQSDVVLEFAWGTNMDQASLEVRDKMEAL--SLPL 104

Query: 129 DPKKNLLVTTTEKEISIVLSQN-------NIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + K  +L+        I+           +    I                ++       
Sbjct: 105 ETKPPVLLRFNPSTEPIMRLALSPKQAPGSDTDAIRQLTGLRRYADEDLKKKLEPVAGVA 164

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++  + D  +L QL      +       N +  G        R       
Sbjct: 165 AVKVGGGLEDEIQVDIDQQKLAQLNLPIDNVITRLKEENVNISGGRLEEGSQRYLVRTVN 224

Query: 242 LVEDKVEISGIHLNGATANFDPKT-------------------------HKPVVDISFDE 276
              D  EI  + +   +++                                     S   
Sbjct: 225 QFVDLDEIRNMLVTTQSSSSSAADAAMQQMYAIAASTGSQAALAAAAEVQSTSSASSSSI 284

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            G          ++ +          L      +     +   +   T          L+
Sbjct: 285 AGGMPVRLKDVADVRQGYKEREAIIRLGGKEAVELAIYKEGDANTVSTAAALRARLEQLK 344

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           A           E        + S  K    I   L ++++F+ +  G    V   S+ +
Sbjct: 345 ATVPGDVQITTIEDQSHFIEHAISDVKKDAVIGGVLAILIIFLFLRDGWSTFVISLSLPV 404

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
           ++I T   +  LG +L + S+ G+ L  GL VD +I+V E I +   +  SV  +   G 
Sbjct: 405 SIITTFFFMGQLGLSLNVMSLGGLALATGLVVDDSIVVLESIAKARERGLSVLDAAIAGT 464

Query: 457 SRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
                 +  S +T +   + L F     G   R  A+T+ ++I IS+  +++++  +   
Sbjct: 465 REVSMAVMASTLTTIAVFLPLVFVEGIAGQLFRDQALTVAIAIAISLVVSMTLIPMLSSL 524



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 66/207 (31%), Gaps = 6/207 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  +           +   +++    +     I   E     I   +       VI 
Sbjct: 318 ELAIYKEGDANTVSTAAALRARLEQLKATVPGDVQITTIEDQSHFIEHAISDVKKDAVIG 377

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+LI        +       +L + I  T  F    G+  N+ ++  +    G  V+
Sbjct: 378 GVLAILIIFLFLRDGWSTFVISLSLPVSIITTFFFMGQLGLSLNVMSLGGLALATGLVVD 437

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
           D +VV + +    K     +S  D       E     + +++      LP+       G 
Sbjct: 438 DSIVVLESI---AKARERGLSVLDAAIAGTREVSMAVMASTLTTIAVFLPLVFVEGIAGQ 494

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    A+ +A  I ++   S+ +   +
Sbjct: 495 LFRDQALTVAIAIAISLVVSMTLIPML 521



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/216 (11%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +       +    ++  +  +     D      V E+      + +      +  
Sbjct: 874  AAVAEVLATTGPSEIHRADQTRVAIVSASLKDIDLGGAVREVETLVRKDPLAAGVGMHIG 933

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
              G ++++ + +  +    ++   + + +  +F+        + T+ L +   +    + 
Sbjct: 934  GQGEELAQSV-KSLLFAFGLAIFLVYLVMASQFESLLHPFVILFTIPLAMVGAVLALLMT 992

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTSISFRDLIDKSINETLGR 771
            G   ++     ++ L+G    + +++ D++   R+        +  R+ + +     L  
Sbjct: 993  GKPVSVVVFIGLILLVGLVTKNAIILIDKVNQLREE------GVPKREALIEGARSRLRP 1046

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
             + T++      LP+AV    G  V    AI +  G
Sbjct: 1047 IIMTTLCTLFGFLPLAVAMGEGAEVRAPMAITVIGG 1082


>gi|167723570|ref|ZP_02406806.1| RND transporter, HAE1/HME family protein [Burkholderia pseudomallei
           DM98]
          Length = 1036

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/608 (11%), Positives = 182/608 (29%), Gaps = 42/608 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL   +        + ++P A+    IS+  D  G S  +++  
Sbjct: 22  RRPVLSLVFSLLILLVGLRALM-----SLPVRQYP-ALESATISVATDYPGASQELMQ-- 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 GF+     +  +          +  Q ++ +      +   +    +V   +Q 
Sbjct: 74  ------GFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQ 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     + +  ++R     +       
Sbjct: 128 VKYKLPADAYDSVITKLTDAPTAVMYLGFASDAL--SIAQITDYVVRVAQPFVTTVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D +RL     +   ++      N                     
Sbjct: 186 SAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANT 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D    +                   + +     G           +           
Sbjct: 246 DLTDVGAFN------------------EMVVKSAPNGGGLVRLKDVATVEIGGENYNSSA 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +   G +   +                      S + 
Sbjct: 288 LMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVQIANMFDGARFVNASIAE 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L+++ + AL+   G +L L ++  +V
Sbjct: 348 VRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMV 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +  +G     S +     T +     +   G
Sbjct: 408 LAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++L+S   A+++   +   ++  +       K+I+         
Sbjct: 468 GLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHA 527

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + + +   +            + +G I + V A +  +L  
Sbjct: 528 YRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDY 587

Query: 594 VRSNLESL 601
           +      +
Sbjct: 588 MERYAPDI 595



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 9/204 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            VL  +++     V ++ + +          E+       + I  + + +++     +  
Sbjct: 316 AVLPAMERNKPASVQIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLG---SFRA 372

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 373 VIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIE 429

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                         E     +           P+ + G   GS+   FA  +A  ++V+ 
Sbjct: 430 QGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSG 489

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ ++  +   +   R    R+
Sbjct: 490 IVALTLSPMLGSLLLTSRMSEGRV 513



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L I   L    L     N+     ++TLIG 
Sbjct: 865  GFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N       +  R  I+++    L   + T+ A    ++P+    G 
Sbjct: 925  ISKHGILMVS--FANDLQRHEGLDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 982

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V    ++F+   +  F+  
Sbjct: 983  GAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAK 1018


>gi|146306240|ref|YP_001186705.1| multidrug efflux protein [Pseudomonas mendocina ymp]
 gi|145574441|gb|ABP83973.1| acriflavin resistance protein [Pseudomonas mendocina ymp]
          Length = 1017

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/528 (12%), Positives = 158/528 (29%), Gaps = 47/528 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G          +  + ++P                   + +   
Sbjct: 9   RRPVLATVVSLLIVLLG-----FQAFSKLSIRQYPQMENAL-------------ITVTTA 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  +  +       S +Q  + I++        + +  ++  
Sbjct: 51  YPGANAETIQGYITQPLQQSLASAEGIDYMTSSSQQNLSTISIYAHIGADTDRLFTELLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               V ++L  D +  +L        +++      D++ +   + +  + R    ++   
Sbjct: 111 KANEVKNQLPQDAEDPVLSKEAADASALMYVSFYSDELSN--PQITDYLSRVIQPKLATL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +       +  +    DP ++     T   ++      N          +++  S 
Sbjct: 169 PGMAEAQILGNQVFAMRLWLDPVKMAAYGITAGDLNSAVRKYNFLSAAGEVKGQYVVTSI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                ++                           I    +G  R        +       
Sbjct: 229 NASTDLKSAEAFGA--------------------IPVKTLGDTRVLVRDIARVEMGAENY 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                            G    +    I+    +   L A   P     +          
Sbjct: 269 DSISSFDGIPSVYIAIKGTPSANPLDVIKEVRGILPELEAQLPPNLKVAIAYDATLFIQA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V++V+F+ +   +  L+   +I L++I  L  + L+G ++ L ++
Sbjct: 329 SIDEVVKTLVEAVLIVIVVVFLFLGAFRSVLIPVITIPLSMIGVLFFMQLMGYSINLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E I     + ++ F +   G       +    IT       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENIHRHIEEGKTPFDAAIEGAREIAVPVVSMTITLAAVYAPI 448

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            F     G   + FA+T+  +++IS   A+++   M   ++R+ +  S
Sbjct: 449 GFLEGLTGALFKEFALTLAGAVIISGIVALTLSPMMCAKLLRHDENPS 496



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 70/214 (32%), Gaps = 10/214 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N  +               +  + ++                  +    L     V   +
Sbjct: 797  NSAIIEGVPIVSQGEAIDTITAIAREEAPRGYSFDYAGASRQYIQEGSAL----FVTFAL 852

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG   
Sbjct: 853  ALAIIFLVLAAQFESFRDPLVILVTVPLSICGALVPIFLGFSTMNIYTQVGLVTLIGLIS 912

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGG 791
               +++ +    N   +   +  R+ I+++    L   + T+ A    ++P+ +    G 
Sbjct: 913  KHGILIVE--FANQLRHEKGLPLREAIEEAAAIRLRPVLMTTAAMVFGMVPLILASGAGA 970

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                   + +A G+ V    ++F+   +   +  
Sbjct: 971  VSRFDIGLVIATGMSVGTLFTLFVLPCVYSLLAK 1004



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L  + T+ L +   L F  L G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 FRSVLIPVITIPLSMIGVLFFMQLMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 +  D   +   E     V  ++       P+       G++   FA+ +A  ++
Sbjct: 412 HIEEGKTPFDAAIEGAREIAVPVVSMTITLAAVYAPIGFLEGLTGALFKEFALTLAGAVI 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ ++  +   +       + +
Sbjct: 472 ISGIVALTLSPMMCAKLLRHDENPSGL 498


>gi|295697681|ref|YP_003590919.1| acriflavin resistance protein [Bacillus tusciae DSM 2912]
 gi|295413283|gb|ADG07775.1| acriflavin resistance protein [Bacillus tusciae DSM 2912]
          Length = 1058

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 65/542 (11%), Positives = 161/542 (29%), Gaps = 24/542 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + ++  ++  +G +      LP   +D +P+      +                  
Sbjct: 10  RPVTISMIMVVLILLGSIA-----LPLLRVDLYPTLSIPVAV---------VTTTWNGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +   + ++       S RQ  + + + F      +     +   L  V
Sbjct: 56  PEEMEQQVSKPIEAAMATVQGVSEVDSSSRQGGSLVVVHFNYGVNLDQAMLNMRDKLDRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L        ++      + I+    +        +E           ++        
Sbjct: 116 RKALPDGADTPQVMRLDPNSMPILSIAMSGP---MDPVELQRLASDVVEPRLSRVNGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S     Q+     P++++    +  ++       N S    +      R +      
Sbjct: 173 ATVSGGRQRQIQVVLGPAKMQAYGISINQVLQAIQGDNTSADAGVVDQGTRRVTVRVIGD 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   ++  + ++ + +     +       + D  G          +I    A V     
Sbjct: 233 FQSVQDLGDVPIHLSGS----PSGAAGPGSAGDVPGVPVLHLRDIADIQDTFAEVTQSAR 288

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L             +  +     +        L+    P     V          S    
Sbjct: 289 LNGQQSVSIDVYKVSDGNTVQVSDNVRKELDTLQKLLPPTVKLSVISDQATFIKQSIDTV 348

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                + A   ++VL++ +   +  LV    I ++VI T +LL   G T+ + ++ G+ L
Sbjct: 349 VNHTLLGALFSVVVLYLFLRRVRTTLVIAVVIPISVISTFSLLYFSGQTINVITLGGLAL 408

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           G+G  VD  ++V E I     +      +  +G +   + +  S ++ +   + + F  G
Sbjct: 409 GLGSLVDFAVVVLESIFRHRSEGAGPKEAAKVGTAEVGTAVMASALSQIAVFLPIAFTQG 468

Query: 483 ---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                    A+T+  S + ++F A+++V  +    I     +           +      
Sbjct: 469 LAQQLFGPLALTVSFSHIAALFGALTLVPMLAARWIPEMNEEEELRRAARWNPVAAFGRG 528

Query: 540 IQ 541
           IQ
Sbjct: 529 IQ 530



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 73/198 (36%), Gaps = 7/198 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                         +V      + V+ K+ E+                  +  R   + + 
Sbjct: 825  NQNRTVTVSAELFNVPLGNAQQAVRAKLQELPLPDGYTVQLGGQANDLNDSFRSLGLAMP 884

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF-FALFGIEFNLTAVAAVLTLIGYS 733
            ++ + + + +  +F+  F+   I   +            +     ++ A+  ++ +IG  
Sbjct: 885  LAIVFVYMVMASQFESLFSPFIIMFSLPPTFIGAALGLVVTHRALSIDALTGMIMVIGIV 944

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +V+ D +    +L    ++  D I+++    L   + T+    +++LP+ +    G
Sbjct: 945  VNNAIVLVDYIN---QLRKRGLARNDAIEQAGPIRLRPILMTTATTVLAMLPLVIGYGEG 1001

Query: 791  GSVIGSFAIPMAFGIVVA 808
                   A  +AFG+ V+
Sbjct: 1002 AEAQAPMATVVAFGLTVS 1019



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 82/244 (33%), Gaps = 10/244 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  +R   +         Q+        V +           +V + V+K++  +  L
Sbjct: 265 VPVLHLRDIADIQDTFAEVTQSARLNGQQSVSIDVYKVSDGNTVQVSDNVRKELDTLQKL 324

Query: 649 STIQNTEIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILD 703
                   V    +  + +     V           +++Y+++R      + A+  + + 
Sbjct: 325 LPPTVKLSVISDQATFIKQSIDTVVNHTLLGALFSVVVLYLFLRRVRTTLVIAVV-IPIS 383

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  T       G   N+  +  +   +G  V+  VVV + +    +  +     ++    
Sbjct: 384 VISTFSLLYFSGQTINVITLGGLALGLGSLVDFAVVVLESI---FRHRSEGAGPKEAAKV 440

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              E     + ++++     LP+A   G     F  P+A  +  +  +++F A  ++  +
Sbjct: 441 GTAEVGTAVMASALSQIAVFLPIAFTQGLAQQLFG-PLALTVSFSHIAALFGALTLVPML 499

Query: 824 YDWR 827
               
Sbjct: 500 AARW 503


>gi|291277579|ref|YP_003517351.1| putative copper resistance protein CrdD [Helicobacter mustelae
           12198]
 gi|290964773|emb|CBG40629.1| putative copper resistance determinant, CrdD [Helicobacter mustelae
           12198]
          Length = 1034

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/680 (10%), Positives = 196/680 (28%), Gaps = 48/680 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   +++ +  ++    +       L  + LD  P   P   I           +  E 
Sbjct: 10  LRFKYFVLGVIFLLLIASIWA-----LRNTPLDALPDISPVQVI---------LQIDYEG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                ++  +          + +  +        +  + + F D         ++   + 
Sbjct: 56  QSPKVIDEQVNFLLTSTLMSVPRVDVVRGMSSFGKGLVYVIFKDGTDIYWANSRILEKIT 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  + K  L   ++    + + + ++  + +           +     +   +  
Sbjct: 116 AILPNLPKEAKITLGSDSSGIGWAFIYALSSKTKTLQELKALQDFYYKY---SLLGVDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +               D  +L Q      ++       NN   G +             
Sbjct: 173 SEVASVGGFEKNYEVRIDNDKLVQYNIGFDEVVNAIKKANNDTGGGVILQSGFEKVVNAS 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++++ +I+ + +    +          V ++              + +G         
Sbjct: 233 GYLKNQQDIANVMVKTKNSIPLRVGDIAQVVLTPSARRGIADLNGEGEVVGG-------- 284

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +  F +  A        A   P                +  
Sbjct: 285 ------------IVLVRYGADTFGVIRAIKKRLEQIAKENPNVQITPVYDRSDFIQQAID 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      +VL+++ + + + +  LV   ++ L V+ +  L+ + G T  + S+ GI
Sbjct: 333 NLWHTLLEECVIVLLIVILFLWHLRSALVIVITLPLCVLFSFLLMKIFGITSNIMSLGGI 392

Query: 421 VLGIGLAVDSNILVNERIREEN------RKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            + IG  VD+ I++ E   +           +    ++    S+    +F + +   I+ 
Sbjct: 393 AIAIGAMVDAAIVMVENAHKHLLALPTPHTAKDRMHAIIHASSQVGGAVFFALMIITISF 452

Query: 475 VVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + +F   G   +     A T   +++     +I++V  +M ++I+ K +        + F
Sbjct: 453 LPIFGLNGQEGKLFAPLAFTKTFAMIFGALLSITLVPILMFYLIQGKILPEEKNILSAFF 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             +        +R  +  +G+        + L       +      G+ + +        
Sbjct: 513 MRLYTPALKLALRFDYIFLGLCAAGIGYMVYLYPHQKWEFMPPLDEGVMIYMPVTSY--G 570

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           + V S    L   D   ++F   ++   ++      +      +                
Sbjct: 571 ANVESARAFLVKTDKILKSFPEVESVFGKVGSANTPTDPAPLAMIETFITFKPKNQWRKG 630

Query: 652 QNTEIVGPKISRELIRKGIV 671
            + + +  +  + L  KG+ 
Sbjct: 631 MDMQKLRNEFEKALQVKGLT 650



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 64/153 (41%), Gaps = 6/153 (3%)

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            I +LI I   +    AL  + TL L +  +     +FGI  N+ ++  +   IG  V+ 
Sbjct: 343 VIVLLIVILFLWHLRSALVIVITLPLCVLFSFLLMKIFGITSNIMSLGGIAIAIGAMVDA 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +V+ +   K++    T  + +D    I  + ++  G   +  M   IS LP+    G  
Sbjct: 403 AIVMVENAHKHLLALPTPHTAKDRMHAIIHASSQVGGAVFFALMIITISFLPIFGLNGQE 462

Query: 794 IGSF---AIPMAFGIVVAASSSIFIAAPILLFI 823
              F   A    F ++  A  SI +   ++ ++
Sbjct: 463 GKLFAPLAFTKTFAMIFGALLSITLVPILMFYL 495



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/145 (20%), Positives = 55/145 (37%), Gaps = 8/145 (5%)

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKN 747
             +A+    TL   I   L    L G   ++  +   L L+G +    +V+    D   + 
Sbjct: 885  TYAIVVFFTLPFAIFGGLLAIDLLGYNLSVAVIVGFLALLGVAAETSIVMMVYLDSALQK 944

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
             K Y         I +   + +   + T ++   S+LP+      G  V+   A PM  G
Sbjct: 945  RKEY--GGGLESCIIEGAAKRVRPKLMTVLSLVCSLLPIMFNNGVGNEVMKRIAAPMLGG 1002

Query: 805  IVVAASSSIFIAAPILLFIYDWRAK 829
            +V +   ++FI    L  +  +  K
Sbjct: 1003 VVSSMILTLFIVPVCLYVLQKFTEK 1027


>gi|83814320|ref|YP_445058.1| multidrug resistance protein, putative [Salinibacter ruber DSM
           13855]
 gi|83755714|gb|ABC43827.1| multidrug resistance protein, putative [Salinibacter ruber DSM
           13855]
          Length = 1308

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/537 (11%), Positives = 156/537 (29%), Gaps = 25/537 (4%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
              + ++++I  +G L +          +  PS      +            V       
Sbjct: 11  RTAIAVFTLILAVGGLAS----YLTIPKESNPSIEFPQIV---------VTSVYPGASPS 57

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V   +    ++  S +        +  +  + I + F      +    +V   +     
Sbjct: 58  DVESTVSQVIEQEISSINGIDEMRSTSSEGVSTIVVEFTPDVNTDKAYQEVNRAVDRAQP 117

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
            L    ++ L+      +  I+    +      +++ +   +     D +    S ++  
Sbjct: 118 DLPGAVEEPLVDEINTDQFPIMTVNLSGT----YSLARLKTVAEDLQDDLEGISSVLEAN 173

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
               +  ++    D + L+    +   +       N +  G    V  L          +
Sbjct: 174 LIGGLTREVQVNVDLAALKNYNVSYNSLVNTIQQENTNIPGGSIDVNRLNYLVRVDGQFD 233

Query: 245 DKVEISGIHLNGATANFD--PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
              +     +   TAN           V   F +  +     V +        V +    
Sbjct: 234 QPAQQIEELVVKTTANGRTVQVKDVADVIFGFKDRTSYSRLRVLKRERADGETVSVPASE 293

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +     + +   +   T +                   ++            +  
Sbjct: 294 RRTAQVISLNVTKRPGANILETSDAVKSTLDAFS--FPSGTEVLLTGDQSENVQSLVTDL 351

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +         V+ VL   +      LV   +I L++  +  +   LG TL    +  +++
Sbjct: 352 ENNIISGLIFVIAVLLFFLGVRNATLVGI-AIPLSMFTSFLVFQALGYTLNFIILFSLII 410

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G+ VD+ ++V E I     +  S + S  +G +     +  +  T + A   +  +  
Sbjct: 411 ALGMLVDNAVVVIENIYRFREQGYSRWESARLGTAEVGGPVVAATATTVSAFAPMLLWPG 470

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G  +    +T+ +++  S+F A+ I   +  F +  K   + +        L   
Sbjct: 471 IIGEFMSYMPLTLIITLTSSLFVALIINPVITGFFVEVKGRSNGEKGSSRWPALARY 527



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 77/267 (28%), Gaps = 25/267 (9%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L V   R   + +          G  S    D  +   V     PG +  +       +
Sbjct: 990  SLTVTNPRGQQIPLTSVADIEEGTGFGSITRIDQNRVVTVSGGAAPGYNGPEVLTRVQDE 1049

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
                              G +  +E        ++I A  +L+ + + F         + 
Sbjct: 1050 LSEYRQGLPPGYTMEYTGGNEDQQESFGFLTTALLIGASLILLILIVEFNSISAPFIIMV 1109

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             + L +   L    L    FNL     ++ L G  VN+ +V+ D +   M+L       +
Sbjct: 1110 AVGLSMIGVLLGLILTRTPFNLFTFIGIIALAGIVVNNNIVLVDYI---MQLRGRGQDKQ 1166

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPM------------------AVWGGSVIG---SF 797
            + I +     L   + T++   + ++P+                    +G          
Sbjct: 1167 EAIVEGGATRLRPVLLTALTTILGLVPLTFGINVDFVGLLADFAPNFQFGSENTQFWGPM 1226

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIY 824
               +  G+  A   ++ I   +     
Sbjct: 1227 GTAIISGLTFATFLTLVIVPVMYSVFD 1253



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 84/257 (32%), Gaps = 8/257 (3%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           L       G   +      V+       S  R  +   +  D    +    +    ++  
Sbjct: 242 LVVKTTANGRTVQVKDVADVIFGFKDRTSYSRLRVLKRERADGETVSVPASERRTAQVIS 301

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV----GVIISAIA 679
                     +LE      + +   S    TE++      E ++  +      +I   I 
Sbjct: 302 LNVTKRPGANILETSDAVKSTLDAFSFPSGTEVLLTGDQSENVQSLVTDLENNIISGLIF 361

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ++  +        A      + L +  +   F   G   N   + +++  +G  V++ VV
Sbjct: 362 VIAVLLFFLGVRNATLVGIAIPLSMFTSFLVFQALGYTLNFIILFSLIIALGMLVDNAVV 421

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           V + +    +      S  +       E  G  V  +     +  PM +W G +IG F  
Sbjct: 422 VIENI---YRFREQGYSRWESARLGTAEVGGPVVAATATTVSAFAPMLLWPG-IIGEFMS 477

Query: 800 PMAFGIVVAASSSIFIA 816
            M   +++  +SS+F+A
Sbjct: 478 YMPLTLIITLTSSLFVA 494


>gi|114319813|ref|YP_741496.1| acriflavin resistance protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226207|gb|ABI56006.1| acriflavin resistance protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1027

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/520 (13%), Positives = 157/520 (30%), Gaps = 43/520 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM-PKNRISLGLDLRGGSHLVLEV 60
           +   + V++  +   +GL       L +  +D  P    P   +S G             
Sbjct: 9   QRPVFTVMVTLIAVVLGL-----TSLTRLPVDLLPDVAYPTLTVSTG----------YAD 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    ++  + +           + Q+ +TL+FA     E  A+ +   L 
Sbjct: 54  ASPREVEQQITRRVEDAVAAVPGVERINSVSGEGQSDVTLNFAWGTHLEQAANDLRDRLD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  +  +  +      +  I++   +        IE    +  Q   ++      
Sbjct: 114 RVVPSLPDEADRPRVRQVDLGDTPIMIIGVSGP---LDPIELRRLVDDQMAYRLERLPGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   +  ++    DP RL+ L  T   +    V  +                    
Sbjct: 171 GAIDIWGGLEREIEVGVDPGRLQSLGLTLDSVRDALVEADFEVAAGGLE----------- 219

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G +               + +I+                I          
Sbjct: 220 ---------EGRYDRALRIPGRFTDLDALQEITIARAEGAFVRLGQLAEIRDTHQRETRR 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +      +     +++ +   T        A +      +++      +      +  
Sbjct: 271 IRINGEPGIRLAVRKQSEANTVATARELRRELARMDRDFPTVQV-QPITDSARYIERAMR 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  +   L ++VL   +   +   VA  +I ++++ + AL+   G TL L ++ G+
Sbjct: 330 NLGQSIVLGGSLAILVLLFFLRDVRATAVAAVAIPISLVTSFALIYGGGFTLNLMTLGGL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            LG+GL VD+ I+V E +     +      +   G       +  S +T L   + L F 
Sbjct: 390 ALGVGLMVDNAIVVLESVMARRERGAPPLEAAVQGTGEVAPAVIASTLTTLAIFLPLVFL 449

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
               G   +  A  +  S+  S+  A+++V  +   + R 
Sbjct: 450 EGLAGELFQPLAWVVAFSLFCSLLVALTLVPMLTALMPRR 489



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 54/152 (35%), Gaps = 6/152 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++   +       L  + T+ +     +    L G   N  +    + L G  VN+ +++
Sbjct: 877  MVMASLYESLRDPLVVMFTVPMAAIGVILALWLSGTTLNAQSFIGTILLAGIVVNNGILI 936

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
             DR     +     +  R    ++    L   + TS    +++LP+A+    G       
Sbjct: 937  VDRA---TRYRRAGLPPRAAALQAGRRRLRPVLMTSATTMLALLPLALGWGEGAEAQAPM 993

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            A  +  G+  A   ++ +   +    +  R +
Sbjct: 994  ARAVLGGLTSATLITLLLIPVVYTLFHPARKR 1025



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 80/246 (32%), Gaps = 6/246 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  +    ++ Q      +        L   +    ++VA  R L     ++    P
Sbjct: 251 FVRLGQLAEIRDTHQRETRRIRINGEPGIRLAVRKQSEANTVATARELRRELARMDRDFP 310

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +Q        I R +   G   V+  ++A+L+ ++          A   + + +  +
Sbjct: 311 TVQVQPITDSARYIERAMRNLGQSIVLGGSLAILVLLFFLRDVRATAVAAVAIPISLVTS 370

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   NL  +  +   +G  V++ +VV + +   M          +   +   E
Sbjct: 371 FALIYGGGFTLNLMTLGGLALGVGLMVDNAIVVLESV---MARRERGAPPLEAAVQGTGE 427

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                + +++      LP+       G +    A  +AF +  +   ++ +   +   + 
Sbjct: 428 VAPAVIASTLTTLAIFLPLVFLEGLAGELFQPLAWVVAFSLFCSLLVALTLVPMLTALMP 487

Query: 825 DWRAKN 830
               ++
Sbjct: 488 RRVGRH 493


>gi|304313245|ref|YP_003812843.1| Predicted membrane protein, AcrB/AcrD/AcrF family [gamma
           proteobacterium HdN1]
 gi|301798978|emb|CBL47216.1| Predicted membrane protein, AcrB/AcrD/AcrF family [gamma
           proteobacterium HdN1]
          Length = 1041

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/513 (12%), Positives = 147/513 (28%), Gaps = 40/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV-LEV 60
           R     +++ ++I   GL            + ++P +          D+     +     
Sbjct: 10  RRPVLAIVVNALIIIAGL-----QAWKSLSVRQYPQS----------DISSIVIVTPYIG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V GF+    +   +                + +T     +         +T  + 
Sbjct: 55  ASAEVVRGFVTTSIERAIASTDGIDYVESKSLLGLSLVTARLKLNYDPIKALADITAKVN 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V ++L  + +   +   +          +   + +    E +  ++R    ++      
Sbjct: 115 QVRNELPAEAEAPAISVQSGDSDYAAAYLSFSSKTV-SQTEITDYLMRVVQPRLASLPGM 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +     P  +  L  T +++    V  N           +        
Sbjct: 174 QRADVFGARTWAMRVWLKPEVMAALGITPSQVHSALVSNNYLAAIGSTKGSYS------- 226

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                            T N D  T +    +   E            N+          
Sbjct: 227 -------------QTYLTTNTDLHTAEEFRQLIIREQNGAVIRLEDVANVELGAEDYDTV 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +    ++        +RAG        +          +  
Sbjct: 274 VSFNGETAVFIGIFPLPTANMLDVVKHVRTELESIRAGLPDGVEANMGYDASEYIQDALF 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      +V++V+F+ +   +  L+   +I +++I  + L+ + G TL L ++  I
Sbjct: 334 DVVRTLVDTLLIVILVIFLFLGSARSVLIPIVAIPVSLIGAIFLMQIFGFTLNLLTLLAI 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +GL VD  I+V E +    R+  S   +   G       +    IT       +   
Sbjct: 394 VLSVGLVVDDAIVVVENVERHLRQGLSPVNAALEGARELIGPVIAMTITLAAVYTPIGLQ 453

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAM 510
           G   G   + FAIT+  ++ IS   A+++   M
Sbjct: 454 GGLTGTLFKEFAITLAGAVTISGIVALTLSPMM 486



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 53/439 (12%), Positives = 138/439 (31%), Gaps = 15/439 (3%)

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAG-IVLGIGLAVDSNILVNERIREENRKNQ 446
            +   +  +   +T ++   + +T  +  +    +LG+ L      L  + I+       
Sbjct: 52  YIGASAEVVRGFVTTSIERAIASTDGIDYVESKSLLGLSLVTARLKLNYDPIKALADITA 111

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
            V    +   + A +                  F    V    IT  L  ++    A   
Sbjct: 112 KVNQVRNELPAEAEAPAISVQSGDSDYAAAYLSFSSKTVSQTEITDYLMRVVQPRLASLP 171

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
                           + + P     L      +         +               T
Sbjct: 172 GMQRADVFGARTWAMRVWLKPEVMAALGITPSQVHSALVSNNYLAAIGSTKGSYSQTYLT 231

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
              +     +    +    N  V      +N+E       +  +F+GE    + +   P 
Sbjct: 232 TNTDLHTAEEFRQLIIREQNGAVIRLEDVANVELGAEDYDTVVSFNGETAVFIGIFPLPT 291

Query: 627 DSVAQT-----RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
            ++          LE ++  + + V  +   +          +++R  +  ++I  + + 
Sbjct: 292 ANMLDVVKHVRTELESIRAGLPDGVEANMGYDASEYIQDALFDVVRTLVDTLLIVILVIF 351

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++         L  I  + + +   +    +FG   NL  + A++  +G  V+D +VV 
Sbjct: 352 LFLGSARSV---LIPIVAIPVSLIGAIFLMQIFGFTLNLLTLLAIVLSVGLVVDDAIVVV 408

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFA 798
           + +    +     +S  +   +   E +G  +  ++       P+ + G   G++   FA
Sbjct: 409 ENV---ERHLRQGLSPVNAALEGARELIGPVIAMTITLAAVYTPIGLQGGLTGTLFKEFA 465

Query: 799 IPMAFGIVVAASSSIFIAA 817
           I +A  + ++   ++ ++ 
Sbjct: 466 ITLAGAVTISGIVALTLSP 484



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 72/218 (33%), Gaps = 28/218 (12%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRF 688
            T  ++   K + +           +     SR+L  +G   +  + +S + + + + ++F
Sbjct: 815  TAQIDSGLKVLEKAAKEILPPGYSVNYTGESRQLRTEGGKFLPALGLSVLMIFLALAVQF 874

Query: 689  -KWYFALGAITTLILDITKTLGFFALF--------------GIEFNLTAVA--AVLTLIG 731
              +      +  L        G                   G    +   A   ++TL+G
Sbjct: 875  NSFRDPF--VILLGSVPLAMFGALLFTVLKMPDPDMRYWTDGWTTTMNIYAQVGLVTLVG 932

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                + +++ +      KL    +   +   ++    L   + TS+A      P+ +   
Sbjct: 933  LIAKNGILIVEFAN---KLQEQGMEKYEAARQAAMIRLRPVLMTSIATIAGHFPLTLVEG 989

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             G +   S  + +  G+ +    ++F+   + + I   
Sbjct: 990  PGAAARNSIGLVLVGGMTIGTLFTLFVLPSLYVLIARR 1027


>gi|218263137|ref|ZP_03477356.1| hypothetical protein PRABACTJOHN_03037 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222922|gb|EEC95572.1| hypothetical protein PRABACTJOHN_03037 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1072

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 75/577 (12%), Positives = 156/577 (27%), Gaps = 48/577 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I      I     L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISVLIV-----ILGILGLLSLPITQYPDIAPPT-------------VSVRATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   +     N    I++ F      +  A  V  
Sbjct: 51  TGANAQTVLNSVIAPLEDQINGVENMMYMTSNASNNGSADISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +++      +                I ++   
Sbjct: 111 RVSMAQGLLPAEVTKIGVTTQKRQNSMLIVFSVYDAEDRYDQRFIENYAKINLIPEVQRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P  + Q       ++      N       FG +    + 
Sbjct: 171 PGVGDANVLGT-DYSMRIWLKPDVMAQYNLVPNDVAGVLAEQNVEAAPGSFGEQ---GNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              + ++    +                +I       
Sbjct: 227 SFQYTIRYKGRL-------------QEVNEFEDMVVKALPDGEVLRMKDIADIELGRLTY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +        I    A  +   TI     L         P     V          
Sbjct: 274 NFVNKVNGHSAVTCIVYQMAGTNATETINNIQNLLEETEKILPPGLKIDVGMNANDFLYA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +LSL+G +L L ++
Sbjct: 334 SIHEVLKTLIEAFILVFIVVYIFLQDLRSTLIPAIAIPVALIGTFFMLSLIGFSLNLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSR---AYSTIFDSNITALIA 473
             +VL I + VD  I+V E +  +  +   S   +     +    A  +I    ++  I 
Sbjct: 394 CAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSAKLASIDAMNELGGAIVSITLVMMSVFIP 453

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----KKMKSIDINPLS 529
              +    G   R F +TM +SI +S   A+++  A+    ++      + KS  ++   
Sbjct: 454 VSFMSGTAGTFYRQFGLTMAISIGLSALNALTLSPALCAMFLKPHEEGHEKKSTFVSRFH 513

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
             F       +   + R          S   +     
Sbjct: 514 SSFNAAYDSLLNSYKKRVVFFIQKKWLSFGIVAGCIV 550



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/421 (12%), Positives = 109/421 (25%), Gaps = 38/421 (9%)

Query: 444  KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
              QS        F RA   + D+    ++        G  A     + M       +   
Sbjct: 638  MMQSSDIVYGSLFMRAQKIVKDAQ---VLFFTPPMIPGYSASSDIELNMQDKTGGDLEKF 694

Query: 504  ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
              + +     +    ++KS        F      I     +         +         
Sbjct: 695  FEVTKQYTAALTARPEIKSAQSTFNPNFPQYMIDIDAAACKKVGISPSDILATMQGYYGG 754

Query: 564  LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-------- 615
            L+    N        + +        +L  +++              F   K        
Sbjct: 755  LYASNFNR-FGKMYRVMVQADPALRTNLESLKNIKVRNGNEMAPISQFVSIKKVYGPDII 813

Query: 616  ---NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
               N    ++     +   T    +   +      L T    E+ G             G
Sbjct: 814  SRFNMYTSIKVMVAPADGYTSGQALKAIEEVASTTLPTGFGYELGGMAREEAETSGSTTG 873

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITT----LILDITKTLGFFALFGIEFNLTAV-- 723
            +I     + +Y+ +      +   L  + +    L+       G+ AL  I      +  
Sbjct: 874  LIFLLCFVFVYLLLSAQYESYILPLAVLLSIPFGLMGSFLFVQGWAALGNIPALKMILGT 933

Query: 724  --------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
                     A++ L+G    + +++ +     +      +S            L   + T
Sbjct: 934  MSNNIYMQIALIMLVGLLAKNAILIVEFA---LDRRRMGMSITWAAVLGAAARLRPILMT 990

Query: 776  SMAAFISVLPM-AVWGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S+A  + +LPM   +G       +       G+ +     IFI   + +     + K   
Sbjct: 991  SLAMVVGLLPMMFAFGVGAHGNRTLGTAAIGGMFIGMIFQIFIVPVLFVVFQYLQEKFKP 1050

Query: 833  I 833
            I
Sbjct: 1051 I 1051



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 75/207 (36%), Gaps = 8/207 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                       +LE  +K +   + +    N          E+++  I   I+  I + 
Sbjct: 295 TNATETINNIQNLLEETEKILPPGLKIDVGMNANDFLYASIHEVLKTLIEAFILVFIVVY 354

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++         L     + + +  T    +L G   NL  + A++  I   V+D +VV 
Sbjct: 355 IFLQ---DLRSTLIPAIAIPVALIGTFFMLSLIGFSLNLLTLCAMVLAIAIVVDDAIVVV 411

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFA 798
           + +   +     S     +   ++NE  G  V  ++      +P++   G+       F 
Sbjct: 412 EGVHAKLDQGYKSAKLASI--DAMNELGGAIVSITLVMMSVFIPVSFMSGTAGTFYRQFG 469

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYD 825
           + MA  I ++A +++ ++  +      
Sbjct: 470 LTMAISIGLSALNALTLSPALCAMFLK 496


>gi|153209397|ref|ZP_01947383.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212218238|ref|YP_002305025.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuK_Q154]
 gi|120575368|gb|EAX31992.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Coxiella burnetii 'MSU Goat Q177']
 gi|212012500|gb|ACJ19880.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuK_Q154]
          Length = 1022

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/554 (11%), Positives = 145/554 (26%), Gaps = 31/554 (5%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   V   +    +E  S ++     +    Q ++ + L+         +A+++  
Sbjct: 51  YPGASAKLVESSITTPLEEGISGVQGIDTIISQSFQGESDLKLTLDYGVNVYEVANQIRD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++    +L  +    ++         + L          +       + R  IDQI   
Sbjct: 111 KVEQARVQLPTNINAPVVQVGWGN---MELMDVGFTAPNENPKAIRDYLERNVIDQIEQI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                   +      +    DP ++     +   +       N                 
Sbjct: 168 PGIADVEVAGANQYAMRIWLDPQKMAARGLSVNDVQMAIQNSNVELPAGEIKG------- 220

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                       S I+             +    I  ++ G     +          +  
Sbjct: 221 ------------SSINYPITAETKLNTADQFNNIIVKNDNGQVIRIKDIGQAQLGDDSAD 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +     +        +R         +          G
Sbjct: 269 QSIVTLDGQPGVLLSINNATDANPLDAAKNVNHFLNQIRPHLPNGMKIVPSFDIYAYMHG 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      +  I    V++V+F+ +   +   +   +I + +I +   + LLG ++ + ++
Sbjct: 329 SIHEVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYLLGFSINVITL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I++ E I       +    +   G       +    IT       +
Sbjct: 389 LALVLSIGLVVDDAIVMLENIYRHIENGEKPLIAAIKGSKEITFPVIAMTITLAAVYAPI 448

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPL 528
                      R FA T+  ++LIS F A+++   M                + I+    
Sbjct: 449 GLMQNQAANIFRSFAFTLAGAVLISGFVALTLSPMMCSRFLKAQGGEPKGYSRIIETIYE 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +A    +         ++                  +  G +   V  +  
Sbjct: 509 RMAQGYQKILAAILNKRILVVFAAVLIAVGGFFLAKNIPMAFVPQEDMGFVIAAVSTSSG 568

Query: 589 VDLSVVRSNLESLQ 602
             ++ +   LE + 
Sbjct: 569 SSINTINRGLEQVA 582



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 77/227 (33%), Gaps = 7/227 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++ L                   L        + +   + +     +I   +P       
Sbjct: 259 QAQLGDDSADQSIVTLDGQPGVLLSINNATDANPLDAAKNVNHFLNQIRPHLPNGMKIVP 318

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                      I +  + + I+ + +++ I++   +       I T+ + +  + G   L
Sbjct: 319 SFDIYAYMHGSIHEVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   N+  + A++  IG  V+D +V+ + + ++++           I  S   T     
Sbjct: 379 LGFSINVITLLALVLSIGLVVDDAIVMLENIYRHIENGEK--PLIAAIKGSKEITFPVIA 436

Query: 774 YTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAA 817
            T +       P+ +       +  SFA  +A  ++++   ++ ++ 
Sbjct: 437 MT-ITLAAVYAPIGLMQNQAANIFRSFAFTLAGAVLISGFVALTLSP 482



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/443 (11%), Positives = 109/443 (24%), Gaps = 14/443 (3%)

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G V       +      +   L    ++   A  V  +    D+N    + +    +  
Sbjct: 556 MGFVIAAVSTSSGSSINTINRGLEQVASIFKQAPAVASVVTVADTNAKAFDSVFAMLKPF 615

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI----LISMF 501
           +    S           I         A    F         F +          +    
Sbjct: 616 KDRKQSASQVADVINQKIKQIPGLNAAAFAPSFGGSMQHQLEFYLMGDTYSDLYAVSQKL 675

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
                    +  I    +  S   N      +                            
Sbjct: 676 INQLGNYPGLRVIQSNMRFDSQQYNMTVNRDIAGQLQVNIKDIDNTMAALYGGSKISTFD 735

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR-SNLESLQIGDISFQNFDGEKNFLVR 620
               T+ +           L  +    V+ +  +   L +L                 +R
Sbjct: 736 ANGKTYNVYLQAQENDLHSLASINKFYVNNAQNKLIPLSNLISIKPILSQVVLPHYNRLR 795

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                        +  +V    TE+  L           +    L     +G+I     +
Sbjct: 796 AAQMSAQLAPGYNLGTVVNYLQTELPQLLPANVKYAFTGQAHDLLTSNNSIGLIFLLAMV 855

Query: 681 LIYIWIRFKWYF---ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            IY+ +  ++         +  + L I   +    L G   N+     ++TLIG      
Sbjct: 856 FIYLVLAAQFESFIDPFIILLAVPLSIVGAMASLKLIGGTLNIYTDIGLVTLIGLLSKHG 915

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +++        +L    ++ R+ + K+ +  L   + T+ A     LP+    G      
Sbjct: 916 ILITQFAN---RLQKEGLAMREALLKAASIRLRPILMTTAAMVFGALPLLFSSGGSAQSR 972

Query: 795 GSFAIPMAFGIVVAASSSIFIAA 817
               I +  G++     S+ +  
Sbjct: 973 HQIGIVIIGGLIFGTFFSLVVVP 995


>gi|53722147|ref|YP_111132.1| RND efflux transporter [Burkholderia pseudomallei K96243]
 gi|52212561|emb|CAH38587.1| putative RND efflux transporter [Burkholderia pseudomallei K96243]
          Length = 1018

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 71/608 (11%), Positives = 182/608 (29%), Gaps = 42/608 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL   +        + ++P A+    IS+  D  G S  +++  
Sbjct: 4   RRPVLSLVFSLLILLVGLRALM-----SLPVRQYP-ALESATISVATDYPGASQELMQ-- 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 GF+     +  +          +  Q ++ +      +   +    +V   +Q 
Sbjct: 56  ------GFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQ 109

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     + +  ++R     +       
Sbjct: 110 VKYKLPADAYDSVITKLTDAPTAVMYLGFASDAL--SIAQITDYVVRVAQPLVTTVPGVA 167

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D +RL     +   ++      N                     
Sbjct: 168 SAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANT 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D    +                   + +     G           +           
Sbjct: 228 DLTDVGAFN------------------EMVVKSAPNGGGLVRLKDVATVEIGGENYNSSA 269

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +   G +   +                      S + 
Sbjct: 270 LMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASVEIANMFDGARFVNASIAE 329

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L+++ + AL+   G +L L ++  +V
Sbjct: 330 VRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMV 389

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +  +G     S +     T +     +   G
Sbjct: 390 LAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMG 449

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++L+S   A+++   +   ++  +       K+I+         
Sbjct: 450 GLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHA 509

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + + +   +            + +G I + V A +  +L  
Sbjct: 510 YRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDY 569

Query: 594 VRSNLESL 601
           +      +
Sbjct: 570 MERYAPDI 577



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 71/204 (34%), Gaps = 9/204 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            VL  +++     V ++ + +          E+       + I  + + +++     +  
Sbjct: 298 AVLPAMERNKPASVEIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLG---SFRA 354

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 355 VIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIE 411

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                         E     +           P+ + G   GS+   FA  +A  ++V+ 
Sbjct: 412 QGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSG 471

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ ++  +   +   R    R+
Sbjct: 472 IVALTLSPMLGSLLLTSRMSEGRV 495



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 59/156 (37%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L I   L    L     N+     ++TLIG 
Sbjct: 847  GFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGL 906

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N       +  R  I+++    L   + T+ A    ++P+    G 
Sbjct: 907  ISKHGILMVS--FANDLQRHEGLDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 964

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V    ++F+   +  F+  
Sbjct: 965  GAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAK 1000


>gi|296448128|ref|ZP_06890028.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
 gi|296254351|gb|EFH01478.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
          Length = 1038

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/542 (12%), Positives = 151/542 (27%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + I   G        L       +P+                         
Sbjct: 10  RPVATTLLMAAIMIAGGFAYRFLPLSALPAVDYPTIE--------------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S     + ITL F  S   +    +V   +   
Sbjct: 56  PEVMTTAVTAPLERQFGQMPGLAQMTSSSSAGASLITLQFDLSLTLDVAEQQVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D     +        + +L+   +       ++    I  +   ++        
Sbjct: 116 GSLLPQDLPTPPIYAKINPADAPILT-LAVTSKSLPLVDVEDFIETRLAQKLAQLPGVGY 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
               H     +    +P+ L +       +       N +     F       +      
Sbjct: 175 VGVGHGQRRAIRIRFNPTALAKYGLQIDDLRTIVANANANAPKGGFDGPTQSSTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++D  +                      ++                 +            
Sbjct: 235 IDDPAQF--------------------RNVILAFRNGNAIRLSDVAEVRHGPENDRIASF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A          +   +    +E+   +   LRA         V          S    
Sbjct: 275 ANATPAIVLEIRRQPGTNVIEVVESVKAMLPKLRASLPSALDVAVLSDRTTTIRASVEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +      ++   S+ L+++     + LLG +L   S+  + +
Sbjct: 335 ERELVLAVALVVLVIFVFLRNLPATIIPSLSVPLSLVGAFVAMYLLGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I        +   +   G ++   TI    ++ +   + L F G 
Sbjct: 395 STGFVVDDAIVVIENIARYIEAGMTPLQAALRGSAQIAFTIVSLTLSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FA+T+ ++I+IS F ++S+V  +   ++R++ +       +    ++   I 
Sbjct: 455 VVGRLFHEFAVTLAVTIVISAFVSLSLVPMLCAKLLRHRTIAQRSRFDIVSERIVERMIR 514

Query: 540 IQ 541
             
Sbjct: 515 AY 516



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 60/149 (40%), Gaps = 7/149 (4%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++++R      +    ++ L +        L G   +  ++ A+    G+ V+D +VV 
Sbjct: 349 IFVFLR-NLPATIIPSLSVPLSLVGAFVAMYLLGFSLDNLSLMALTISTGFVVDDAIVVI 407

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFA 798
           + +    +     ++      +   +     V  +++    ++P+   G   G +   FA
Sbjct: 408 ENI---ARYIEAGMTPLQAALRGSAQIAFTIVSLTLSLIAVLIPLLFMGDVVGRLFHEFA 464

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + +A  IV++A  S+ +   +   +   R
Sbjct: 465 VTLAVTIVISAFVSLSLVPMLCAKLLRHR 493



 Score = 44.3 bits (102), Expect = 0.088,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 89/254 (35%), Gaps = 6/254 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            + ++   +  V  + +  L+  D   Q     +     + +      +    +  +    
Sbjct: 773  LPSSAATNGQVPLTAIMRLEERDGPLQITHLGQFPATTISFDVAPGSSLGDAVRAIADAE 832

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
              I    +                +  ++ ++ +   M I + + ++ +   +  ++TL 
Sbjct: 833  ANIALPESFTLAMQGAASAFTATSKSELLLILAAIATMYIVLGVLYESFVHPITILSTLP 892

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    + G + ++  +  ++ LIG    + +++ D   +        +S R+ I
Sbjct: 893  SAGIGALLALIVTGHDLDVMGLIGIILLIGIVKKNAIMMIDFALE--AERVDGLSPREAI 950

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++        + T+MAA +  +P+ +    G  +     + +  G++V+   ++F    
Sbjct: 951  TRACLLRFRPILMTTMAAMLGAVPLMLGSGVGSELRQPLGVSIVGGLLVSQLLTLFSTPV 1010

Query: 819  ILLFIYDWRAKNAR 832
            + L       +  R
Sbjct: 1011 VYLAFDRLARRLRR 1024


>gi|259908034|ref|YP_002648390.1| multidrug efflux system subunit MdtC [Erwinia pyrifoliae Ep1/96]
 gi|224963656|emb|CAX55153.1| Multidrug resistance protein MdtC [Erwinia pyrifoliae Ep1/96]
 gi|283477931|emb|CAY73847.1| Multidrug resistance protein [Erwinia pyrifoliae DSM 12163]
          Length = 1024

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/602 (11%), Positives = 155/602 (25%), Gaps = 28/602 (4%)

Query: 56  LVLEVDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           +V+           +        + +   +        S      ++ L F   R     
Sbjct: 45  IVVTASLPGASPETMASSVATPLERVLGRIAGVSEMTSSSSLGSTQVVLLFDFDRDINGA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
           A  V   +    S L     +           + ++    +        +       Q  
Sbjct: 105 ARDVQGAINAAQSLLPSGMPRRPSYRKVNPSDAPIMI-LTLTSDDHSPGQLYDYASTQLA 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++   +           L  +  + +P  L     +   +       N  K        
Sbjct: 164 QRLAQIDGVGDVTVGGSSLPAVRVDLNPQALFNQGVSLDAVRTTIANANVRKPQGAIEDH 223

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                                       N +  T      +                 + 
Sbjct: 224 --------------------QQRWWLKTNDELHTAAEYRPLVIHYHHGAAVRLQDVATVT 263

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +  V    +  A      +     + +   TI+        LR          + + +
Sbjct: 264 DSVENVRTAGMSNARPAVLVVIRKSPRANVIATIDRIRSEVPQLRKSIPAAIQLEIAQDS 323

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S    + + A+  GLV++V+F  +  G+  L+   ++ +++I T A + L G +
Sbjct: 324 SPTIRASLHEVEQSLAVSVGLVVLVVFAFLRSGRATLIPAIAVPVSLIGTFAAMYLCGFS 383

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L   S+  + +  G  VD  I+V E I            +  +G      T+   +++ +
Sbjct: 384 LNNLSLMALTVATGFVVDDAIVVLENISRHVEAGLKPLQAALLGVREVGFTVVAMSVSLV 443

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + +   G   G   + FAIT+ +SI IS+  ++++   M   ++R    +       
Sbjct: 444 AVFIPMLMLGGIIGRFFKEFAITLSVSIAISLVISLTLTPMMCARLLRSTAPRQQPRLRG 503

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
               L+                    L    +   L  +            Q        
Sbjct: 504 FGRMLVAIQQGYGRALHGVLDHARWALLVFVATLGLTMYLFVSIPKTFMPEQDTGRLMGF 563

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +      S        +   +    +      + +  G       +  ++K   T     
Sbjct: 564 IQADQSISFQAMRGKVEHFMRIVHADPAVESVVGFTGGWEANSGAMFIVLKPLSTRSDNA 623

Query: 649 ST 650
             
Sbjct: 624 QQ 625



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 48/136 (35%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L     + + +  T     L G   N  ++ A+    G+ V+D +VV + +
Sbjct: 351 AFLRSGRATLIPAIAVPVSLIGTFAAMYLCGFSLNNLSLMALTVATGFVVDDAIVVLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +     +         + E     V  S++     +PM + GG +      FAI +
Sbjct: 411 ---SRHVEAGLKPLQAALLGVREVGFTVVAMSVSLVAVFIPMLMLGGIIGRFFKEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           +  I ++   S+ +  
Sbjct: 468 SVSIAISLVISLTLTP 483



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 91/216 (42%), Gaps = 6/216 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             L +   + V+ ++    + + +T +   ++++ +      +  +     +  ++ +   
Sbjct: 803  TLSFNLPEGVSLSQAAAAIDRSVTALGVPASVRGSFSGTAAVFEQTQSSQLWLILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    LF   F+L A+  +L LIG    + +
Sbjct: 863  VYIVLGMLYESYVHPLTILSTLPSAGMGALLALKLFNAPFSLIALIGILLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     +S R+ I ++        + T++AA +  LP+ +    G  +  
Sbjct: 923  MMVDFALQAQRQG--GMSAREAIFQASLLRFRPIIMTTLAAMLGALPLVLSSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               I +  G+VV+   ++F    I L++   R K  
Sbjct: 981  PLGITLVGGLVVSQLLTLFTTPVIYLYMDKLRRKPR 1016


>gi|88856263|ref|ZP_01130923.1| protein export protein SecD [marine actinobacterium PHSC20C1]
 gi|88814582|gb|EAR24444.1| protein export protein SecD [marine actinobacterium PHSC20C1]
          Length = 575

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 108/527 (20%), Positives = 195/527 (37%), Gaps = 27/527 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+N  W  I++     +GL + +            P         L LDL GG+ +VL  
Sbjct: 1   MKN-AWRAIVWLTAVTVGLTVLIGAGSMFGAASWAP--------KLALDLEGGTQIVLAP 51

Query: 61  ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       L      +R  +   G+    +        +        E   +++  
Sbjct: 52  LLESGQTVSGEQLTQAVSIIRDRVDASGVAEAEVTTQGASNVVVSIPGVPDEETLNRIQS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +              + ++   E +   +        + A       +          
Sbjct: 112 SAKLEFRP----VLYTEVASSASAEATPEPTDAAGTPDGASATATPEPTLATTPTAAPTD 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
            S +  +           +        +      +                 V     +D
Sbjct: 168 ASDLNWITEALFDEYTNFDCASLDSFSVAPAAEALITCDSDNAFKYILGPVEVEGSTITD 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +  L+     +S           D  T       +       R F   + +      +V
Sbjct: 228 ASSGLITSSQGVSTGQWGVFPTFNDEGTKDVATMTT-------RLFGFDQTDPRNRFGIV 280

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LDGRV++AP     I  G  QISG+F  ++A +LA  L+ G+LPI   +   + + A LG
Sbjct: 281 LDGRVISAPTTQGIITGGNPQISGSFDQDSAKVLADQLKFGALPIGFEVQSNQTISATLG 340

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT----LT 413
           +  +  G  A + GL+L+V++ +  Y   GLV   S+ +  +LT  +++ L       L+
Sbjct: 341 TTQLNSGLIAGLIGLLLVVVYSLFQYRLLGLVTVASLIVAGVLTYLVIAYLSWRHGYRLS 400

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L  +AG+++ IG   DS I+  ERIR+E R  +S+  +++ G+ RA  TIF +    L++
Sbjct: 401 LAGVAGLIVAIGFTADSFIVYFERIRDELRDGRSLTGAVEAGWKRALRTIFAAKAVNLLS 460

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            VVLF    G VRGFA+T+G++ +I +   +     M+  +   K  
Sbjct: 461 AVVLFVLAVGNVRGFALTLGITTVIDVLVVVLFTHPMLQLLATTKFF 507



 Score = 88.6 bits (217), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 91/285 (31%), Gaps = 9/285 (3%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVRSNLESLQIGDI 606
                S L +          G+    + +G   +  +             N   + +   
Sbjct: 225 ITDASSGLITSSQGVSTGQWGVFPTFNDEGTKDVATMTTRLFGFDQTDPRNRFGIVLDGR 284

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                  +           G     +  +   + K   +     +Q+ + +   +    +
Sbjct: 285 VISAPTTQGIITGGNPQISGSFDQDSAKVLADQLKFGALPIGFEVQSNQTISATLGTTQL 344

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTA 722
             G++  +I  + +++Y   +++    L  + +LI+    T    A      G   +L  
Sbjct: 345 NSGLIAGLIGLLLVVVYSLFQYRLL-GLVTVASLIVAGVLTYLVIAYLSWRHGYRLSLAG 403

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           VA ++  IG++ +  +V ++R+R  ++      S    ++      L           +S
Sbjct: 404 VAGLIVAIGFTADSFIVYFERIRDELRD---GRSLTGAVEAGWKRALRTIFAAKAVNLLS 460

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + + V     +  FA+ +    V+     +    P+L  +   +
Sbjct: 461 AVVLFVLAVGNVRGFALTLGITTVIDVLVVVLFTHPMLQLLATTK 505


>gi|298530589|ref|ZP_07017991.1| acriflavin resistance protein [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298509963|gb|EFI33867.1| acriflavin resistance protein [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 1025

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 58/462 (12%), Positives = 135/462 (29%), Gaps = 27/462 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                E      V   +    +   S +           +  + I +SFA     +  A+
Sbjct: 48  VRTNYEHAGPQEVENLITRPLERAFSAVPGVDEIYSRSVEGLSDIRVSFAWGTDLDAAAN 107

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +   L  V   L  D  +  L         I++   +        IE    I  +   +
Sbjct: 108 DLRDRLDRVAPNLPTDADRPFLRKFDLASFPILILGASS---RLDPIEARRLIEDEVRHR 164

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +              +  ++  +  P +++ L  +  +++      N +    +      
Sbjct: 165 VERVPGVAALEIRGGLEREIHVDLLPGKIQALDLSLEEINRRIREANLNFPAGVREEDQH 224

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +        D  E+SG  +                                  ++   
Sbjct: 225 ETTVRILGEFTDLQELSGTVIAQ--------------------RDGSTIRLGDIADVQDS 264

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
              +     +      +   + ++  +              +      +           
Sbjct: 265 WERITRLVRVNGEPGIRLTINKQSGANTVEVAGQVLQEVERINREFPQLG-ISPIIDTSS 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S +   GT    +   ++VL   +   +   +   +I ++++ T  ++   G T+ 
Sbjct: 324 YIQRSITNVAGTLLYGSFFAVLVLLFFLRSLRGTAIVAAAIPISIVATFIIIYFGGFTIN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++ G+ LG GL VD++I+V E I  +         +   G     + I  S +T +  
Sbjct: 384 LMTLGGLALGAGLLVDNSIVVLENIHRKREGGSPPPQASVSGAGEVAAAITASTLTTMAV 443

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
            + + F     G      A  +G S+L S+  A+ +V  +  
Sbjct: 444 FLPIIFIRGMAGVMFTQLAYVVGFSLLCSLAVALLLVPMLYS 485



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 85/238 (35%), Gaps = 7/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             NL  ++ G         ++  +V +     D+     V ++  +     +P        
Sbjct: 791  RNLVDVRPGTGPMNIERKDQERIVTVSADFADTSLGEVVRDIRSQLELMPIPQGFSIGFG 850

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +        G+ G+I++ + + + +   ++     L  +  + + I        L 
Sbjct: 851  GDYEEQQEAFGELGL-GLILALVLVYMVLACLYESLRDPLIVMFAVPMAIIGVCLMLFLT 909

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
               FN+ +    + L+G  VN+ +++    + N+      +  +  I ++    L   + 
Sbjct: 910  NTTFNIQSYIGCIMLVGILVNNAILLVA--QTNLLRRRDGMLMQSAIREAGRRRLRPILM 967

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T++    ++ P+A+    GG      A  +  G+  +   ++ +   +  FI     K
Sbjct: 968  TALTTIFALTPLAIGAGEGGEAQAPMARAIIGGLASSTLVTLVLVPVMYSFIARKDDK 1025



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/288 (11%), Positives = 79/288 (27%), Gaps = 8/288 (2%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           + +R         +         +   G    +    G  +       + L  +    +S
Sbjct: 205 RRIREANLNFPAGVREEDQHETTVRILGEFTDLQELSGTVIAQRDGSTIRLGDIADVQDS 264

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            +      +        L   +    ++V     +    ++I    P   I         
Sbjct: 265 WERITRLVRVNGEPGIRLTINKQSGANTVEVAGQVLQEVERINREFPQLGISPIIDTSSY 324

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           I R +       +  S  A+L+ ++              + + I  T       G   NL
Sbjct: 325 IQRSITNVAGTLLYGSFFAVLVLLFFLRSLRGTAIVAAAIPISIVATFIIIYFGGFTINL 384

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDLIDKSINETLGRSVYTSMAA 779
             +  +    G  V++ +VV     +N+                   E       +++  
Sbjct: 385 MTLGGLALGAGLLVDNSIVVL----ENIHRKREGGSPPPQASVSGAGEVAAAITASTLTT 440

Query: 780 FISVLPMAVWGGSVIGSFAIP-MAFGIVVAASSSIFIAAPILLFIYDW 826
               LP+    G  +       +A+ +  +   S+ +A  ++  +Y  
Sbjct: 441 MAVFLPIIFIRG--MAGVMFTQLAYVVGFSLLCSLAVALLLVPMLYSR 486


>gi|116329367|ref|YP_799087.1| AcrB family efflux transporter [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116330031|ref|YP_799749.1| AcrB family efflux transporter [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116122111|gb|ABJ80154.1| Efflux pump, AcrB family [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116123720|gb|ABJ74991.1| Efflux pump, AcrB family [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 1106

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/584 (9%), Positives = 162/584 (27%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + +    ++  +   +AL     +  +D FP                    +    
Sbjct: 9   KRPIF-ICSIVLLMLLTGWVAL----GRMGVDLFPDVNIPIV---------SVTTIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  S +          ++  + +   F  +   +    +    +  
Sbjct: 55  GPEEIEELVSKPLEEELSSIAGLKKISSRNQEGVSVVFGEFTLATDIKYAEQQFRDKVGL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL    K+  +V     +  IV      +       +           ++       
Sbjct: 115 VKPKLPTGIKEPKVVRFDPADQPIVRLALFAE---LDQAKLYDIAKETVKSKLEQVAGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++  E D ++L         ++        +     F       S     
Sbjct: 172 SVKIVGGTRREIQIELDRNKLTSYQMPAVVIANRLKTAGLNVPVGKFEAGVKETSYRTLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   +I    ++ +    +    K +  +            +     G     V    
Sbjct: 232 RYESLSQIENTIVSFSGEVGNAVLIKQLGIVRDGTEDEETIGYLWASKEGAVEEKVSFFT 291

Query: 302 VLTA---------------PVINQAIPSGKAQISGNFTIETAGILAAMLR---AGSLPIK 343
            +                           ++  +     +        L           
Sbjct: 292 KIGNFFKGKKENVAVAKETKPALFIDVYKQSGANTVAVADEVLKRIVKLNEGIQNLDGKP 351

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
              +          +         I   L +I ++  +   +  ++   ++  +++    
Sbjct: 352 RIRLIRDGSRWIRYNVEDVTEAIIIGILLAVITVYFFLGNFRSTIITGLALPNSMLGAFV 411

Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTI 463
           L+  +G T+ + ++  + L +GL +D  I+V E I  +  + + V  + + G +     +
Sbjct: 412 LMWAMGFTINVMTLLALSLAVGLLIDDAIVVRENIFRKLEEGKGVMEAAETGTTEVTLAV 471

Query: 464 FDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             +++T +   + + F     G   + F +T+  ++LIS+F  +++   +  +       
Sbjct: 472 IGTSLTVIAVFLPVGFLSGIVGQFFKQFGLTVVFAMLISLFDGLAVAPMLSAYFAGKIDH 531

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
            +     +  F      +  Q+ +     +    +  + S+ + 
Sbjct: 532 HAKPNKAVEFFNKFQTWLERQYGKVMKVALKRPGMVLLASLGIF 575



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/194 (12%), Positives = 63/194 (32%), Gaps = 9/194 (4%)

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           + +           G +  R  +      +II  +  +I ++     +   +     L  
Sbjct: 345 QNLDGKPRIRLIRDGSRWIRYNVEDVTEAIIIGILLAVITVYFFLGNFRSTIITGLALPN 404

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN-MKLYTTSISFRDLI 761
            +          G   N+  + A+   +G  ++D +VV    R+N  +         +  
Sbjct: 405 SMLGAFVLMWAMGFTINVMTLLALSLAVGLLIDDAIVV----RENIFRKLEEGKGVMEAA 460

Query: 762 DKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +    E     + TS+      L    + G  G     F + + F ++++    + +A  
Sbjct: 461 ETGTTEVTLAVIGTSLTVIAVFLPVGFLSGIVGQFFKQFGLTVVFAMLISLFDGLAVAPM 520

Query: 819 ILLFIYDWRAKNAR 832
           +  +       +A+
Sbjct: 521 LSAYFAGKIDHHAK 534



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 88/220 (40%), Gaps = 7/220 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK-ISRELIRKGIVG 672
            ++   + +        A   V ++  + + + +P          G     +EL+   ++ 
Sbjct: 835  DRARTIVINANLAPGGAVQDVTKITDEILKKELPPPPGIRYNFQGQSEDFKELLANIVLA 894

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
              ++ + + + +   ++ +   +  +  +   I+      AL     NL ++  ++ L+G
Sbjct: 895  FGLALVFIYLVLASLYESFITPITILFAIPPAISGAFFALALTNEMLNLFSMIGLILLMG 954

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
                + +++ D   + M+    S +  D I ++    L   + TS+A  +  +P+A+  G
Sbjct: 955  LVAKNSILLVDYAMQAMREGGKSRN--DAIYEAGLVRLRPILMTSIAMIMGTVPIALGFG 1012

Query: 792  SVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                S     I +  G++++   ++ +   I  FI  +R 
Sbjct: 1013 EAAKSRTAMGIAIIGGLILSTIVTLVVVPSIFGFIDRFRE 1052


>gi|254238962|ref|ZP_04932285.1| hypothetical protein PACG_05132 [Pseudomonas aeruginosa C3719]
 gi|126170893|gb|EAZ56404.1| hypothetical protein PACG_05132 [Pseudomonas aeruginosa C3719]
          Length = 1018

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 159/524 (30%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G+         + ++  +P                    +    
Sbjct: 9   RRPVLASVVSLLIVLLGM-----QAFSKLVIREYPQMENALIT---------VTTLYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + G++     +  +  +         RQ  + I++        + +  ++      
Sbjct: 55  NAETIQGYITQPLQQSLASAEGIDYMTSVSRQNYSTISIYARIGANTDRLVTELLAKSNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D +  +L        +++      +Q+ +   + +  + R    ++       
Sbjct: 115 VKSQLPPDAEDPVLQKEAADASALMYISFYSEQMNN--PQITDYLSRVIQPKLATLPGIA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP ++     T  +++      N          + +  S     
Sbjct: 173 EAEILGNQVFAMRLWLDPVKMAAFGVTAGEINQAVQQYNFLAAAGEVKGQLVVTSVNAST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +    I     G RR        +    A      
Sbjct: 233 DLKSP--------------------QAFAAIPVKTDGDRRVLMGDVARVELGAASYDAIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                        G    +    I+        L     P     +          S   
Sbjct: 273 SFNGIPSVYIGIKGTPSANPLDVIKEVRAKMPELEEQLPPNLKVSIAYDATRFIQASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   +I L++I  L  +  +G ++ L ++  +V
Sbjct: 333 VVKTLGEAVLIVIVVVFLFLGAFRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD  I+V E I     + +  F +   G       +    IT       + F  
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIEEGKPPFEAALEGAREIAVPVVSMTITLAAVYAPIGFLT 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   + FA T+  +++IS   A+++   M   ++R+++  S
Sbjct: 453 GLTGALFKEFAFTLAGAVIISGIVALTLSPMMCSRLLRHEENPS 496



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L  + T+ L +   L F    G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 FRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                    +   +   E     V  ++       P+       G++   FA  +A  ++
Sbjct: 412 HIEEGKPPFEAALEGAREIAVPVVSMTITLAAVYAPIGFLTGLTGALFKEFAFTLAGAVI 471

Query: 807 VAASSSIFIAA 817
           ++   ++ ++ 
Sbjct: 472 ISGIVALTLSP 482



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVIMVTVPLSICGALIPLFLGVSSLNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N   +   +  R+ I+++    L   + T+ A  + V+P+ +    
Sbjct: 911  ISKHGILIVE--FANQLRHEQGLGRREAIEQAAAIRLRPVLMTTAAMVLGVIPLILATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        I +A G+ V    ++F+   I   +  
Sbjct: 969  GAVSRFDIGIVIATGMSVGTLFTLFVLPCIYTLVAR 1004


>gi|303248525|ref|ZP_07334782.1| acriflavin resistance protein [Desulfovibrio fructosovorans JJ]
 gi|302490055|gb|EFL49976.1| acriflavin resistance protein [Desulfovibrio fructosovorans JJ]
          Length = 1041

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 59/485 (12%), Positives = 123/485 (25%), Gaps = 35/485 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +   G +               P                     L   
Sbjct: 9   RRPVGTTLLTMALILAGAIA-----FRLLPAAALPQVDFPAI---------SVSAQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           E   +   +    +   + +           +   +I L F   R     A  V   +  
Sbjct: 55  EPQTMATSVAAPLERQFARIAGLSEMTSQSSRGSTRINLIFDLDRDINGAARDVQSAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++N          + V+    +        +           ++   +   
Sbjct: 115 AMGYLPSTLRQNPTYRKMNPADAPVMV-LALTSDTVSRTKMYDVASTVLQQKLSQVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +    DP+ L     + A +                             
Sbjct: 174 QVFVGGGALPAVRVNVDPAALAAKGLSLADVKSMLTK--------------------TTV 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G        N           +                 I   +  V    
Sbjct: 214 NKPKGGIEAGDRSYEVETNDQLHEAWQYQPLILSYKNGAAVRLTDVATITPSVEDVRTAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        I   +   +   T++    L   LRA         VE         S + 
Sbjct: 274 FVNGKPSVMVIVFRQPGANIIETVDNVKALIPQLRASLPGDVDISVEMDRSPPIRASLAE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   +   +++ T A++ LLG +L   S+  + 
Sbjct: 334 VERTLIISCLLVILVVFVFLGSARATLIPAVATVASLVGTFAVMYLLGYSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E +     +  +   +  +G      T+   +++ +   + +   G
Sbjct: 394 IATGFVVDDAIVVVENVARHMEQGMAPRAASLLGSKEVAFTVVSMSVSLVAVFIPILLMG 453

Query: 482 GGAVR 486
           G   R
Sbjct: 454 GMVGR 458



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 77/237 (32%), Gaps = 4/237 (1%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             + T+   +       + L       V L+ V +   S++    +          ++  
Sbjct: 227 YEVETNDQLHEAWQYQPLILSYKNGAAVRLTDVATITPSVEDVRTAGFVNGKPSVMVIVF 286

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI-VGPKISRELIRKGIVGVIISAIAM 680
           +    + +     ++ +  ++   +P     + E+   P I   L       +I   + +
Sbjct: 287 RQPGANIIETVDNVKALIPQLRASLPGDVDISVEMDRSPPIRASLAEVERTLIISCLLVI 346

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           L+           L      +  +  T     L G   +  ++ A+    G+ V+D +VV
Sbjct: 347 LVVFVFLGSARATLIPAVATVASLVGTFAVMYLLGYSLDNLSLMALTIATGFVVDDAIVV 406

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
            + +    +     ++ R        E     V  S++     +P+ + GG V   F
Sbjct: 407 VENV---ARHMEQGMAPRAASLLGSKEVAFTVVSMSVSLVAVFIPILLMGGMVGRLF 460



 Score = 45.1 bits (104), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +S RD I ++  +     + T+MAAF+  LP+A+    G  +     I +A G+
Sbjct: 936  AERERDLSPRDAIYEACLKRFRPIMMTTMAAFLGALPLALGTGSGAELRRPLGIAIAGGL 995

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
            +V+ + +++    I L++   R
Sbjct: 996  LVSQAMTLYTTPVIYLYLDRLR 1017


>gi|294141518|ref|YP_003557496.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
 gi|293327987|dbj|BAJ02718.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
          Length = 1100

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 154/583 (26%), Gaps = 41/583 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + +    +   G++        +  +   P                    +    
Sbjct: 20  RRPVTVWMFMLAVVLFGMV-----GFSRLAVKLLPDLSYPTIT---------IRTLYVGA 65

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 66  APVEIEQLVSKPIEEAAGIVKGLRKISSISRSGMSDVVLEFEWGTDMDMASLDVREKLDT 125

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISEST 180
           +   L +D KK LL+        IV    ++     + ++Q       +   Q+      
Sbjct: 126 I--ILPLDVKKPLLLRFNPNLDPIVRLALSVPDASDNELKQMRTYAEEELKRQLESLTGV 183

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++    +  +L QL     K+                            
Sbjct: 184 AAVRLSGGLQQEVHILLNQEKLTQLNLNADKIRKRIAEE--------------------N 223

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     + G             + + +  I                 +        D 
Sbjct: 224 INLSAGKVVQGDKEYLVRTLNQFNSLEELGQIIVYRDAQTLVRLFEVAEVVDAHKERNDI 283

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +      +     +   +              L    +  +L +           + S
Sbjct: 284 TRIGDQESIELAIYKEGDANTVAVARKVNAAIKQLNDNQVKSELTV-IYDQSEFIESAVS 342

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  I + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 343 EVTSSALIGSLLSMLVIYLFLKDIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 402

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L +GL VD+ I+V E I        S   +   G       IF S +T L   V L F 
Sbjct: 403 ALAVGLLVDNAIVVLENIDRCRSLGMSKLEAAVTGTKEVSGAIFASTLTTLAVFVPLVFV 462

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G      A+T+  ++L S+  A++ +  +            +              
Sbjct: 463 DGVAGALFSDQALTVTFALLASLLVALTTIPMLASREGIKSLPPLLAKEKKLAPETKIGK 522

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +         +   +   +   ++  L          F G   
Sbjct: 523 LKHYSATVFSFPFIVLFSYLPSALLTLALMFGRLLSWFTGLFM 565



 Score = 86.7 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 86/218 (39%), Gaps = 10/218 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +             +   +  + +    ++IQ       +      +   + +++
Sbjct: 867  QQRVAIVSANLAYGDLNEAVLEARNILAKQTLPTSIQARFGGQNEEMEHSFQSLQIALVL 926

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +  +F+     L  +  + + +    LG F + G   ++     ++ L G  
Sbjct: 927  AIFLVYLVMASQFESLLHPLLILIAVPMAVGGSVLGLF-ITGTHLSVVVFIGLIMLAGIV 985

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +V+ DR+ +  +     ++    I ++    L   + T+M   + + PMA     G
Sbjct: 986  VNNAIVLVDRINQLRQEGKEKMA---AISEAAKSRLRPIIMTTMTTALGLSPMAFGLGDG 1042

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              V    AI + FG++++   ++ +  P+L  ++D + 
Sbjct: 1043 SEVRAPMAITVIFGLILSTLLTLVVI-PVLYALFDRKQ 1079



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 76/222 (34%), Gaps = 3/222 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I +   A   V L  V   +++ +  +   +  D E   L   +    ++VA  R + 
Sbjct: 253 GQIIVYRDAQTLVRLFEVAEVVDAHKERNDITRIGDQESIELAIYKEGDANTVAVARKVN 312

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
              K++ +    S +         I   +       +I S ++ML+           L  
Sbjct: 313 AAIKQLNDNQVKSELTVIYDQSEFIESAVSEVTSSALIGSLLSMLVIYLFLKDIIPTLII 372

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++   +  T        I  N+ ++  +   +G  V++ +VV + +    +  +  +S
Sbjct: 373 SISIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAIVVLENI---DRCRSLGMS 429

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
             +       E  G    +++      +P+    G     F+
Sbjct: 430 KLEAAVTGTKEVSGAIFASTLTTLAVFVPLVFVDGVAGALFS 471


>gi|255532152|ref|YP_003092524.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Pedobacter heparinus DSM 2366]
 gi|255345136|gb|ACU04462.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Pedobacter heparinus DSM 2366]
          Length = 1063

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 63/503 (12%), Positives = 135/503 (26%), Gaps = 40/503 (7%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE-LRSFLKK-EG 85
            +  L +FP   P               +++           +       L   +   E 
Sbjct: 28  TKLPLQQFPDIAPPA-------------VLVAAVYPGANAETVLRSVAPSLEESINGVEN 74

Query: 86  IGVFSMRQIQNK---ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           +   S     +    IT+ F      +  A  V   +    S+L  +  +  + TT ++ 
Sbjct: 75  MSYMSSTASNDGTLAITVYFKQGTDPDQAAVNVQNRVAQATSQLPSEVVQQGITTTKQQN 134

Query: 143 ISIVLSQNNIDQV-ISHAIEQSMEIIRQRIDQIGISESTIQRLGS-HRILIQLPGEQDPS 200
             I       +          +       I +I                   +    +P+
Sbjct: 135 SFINAIGVYTEDPKKYDQTFVANYAQINIIPEIKRIPGVGSAAIFGGVKDYSMRVWLNPT 194

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           ++     T  ++       +        G R     +                       
Sbjct: 195 QMANYKITPNEVMAAIQDKSIEAAPGKLGERSNEVFEYVIKYKGKL-------------- 240

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
              K  +                      +            L             A  +
Sbjct: 241 --NKPEEYENIAIRANEDGSVLHLRDVARVELGAYSYTSNSHLNGKDGIVIGIIQLAGSN 298

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
            N        +                  +   A   S      T      LV IV+F+ 
Sbjct: 299 ANEIQIAVDKVMEKAAKDFPVGISYNSFYKTKNALDESIEQVIHTLIEAFILVFIVVFIF 358

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           +   +  L+   ++ ++++ T   ++L G ++ L ++  +VL IG+ VD  I+V E +  
Sbjct: 359 LQDFRSTLIPAIAVPVSILGTFFFMNLFGFSINLLTLFALVLAIGIVVDDAIVVVEAVHA 418

Query: 441 ENRKNQSVFCSLDMGFSR----AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           +  + +    +      R    A  +I        +    +    G   R FA TM ++I
Sbjct: 419 KMEQKRLGAKAATTEAMREITGALISITLVMAAVFLPVGFMTGSTGIFYRQFAFTMSIAI 478

Query: 497 LISMFTAISIVRAMMIFIIRYKK 519
           +IS   A+++  A+    ++   
Sbjct: 479 VISAVNALTLSPALAALFLKSNH 501



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 92/239 (38%), Gaps = 10/239 (4%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V            +      +   +  +Q    ++      ++ V +K  +  P+    
Sbjct: 264 DVARVELGAYSYTSNSHLNGKDGIVIGIIQLAGSNANEIQIAVDKVMEKAAKDFPVGISY 323

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N+         E I + I  +I + I + I ++I    +   L     + + I  T  F 
Sbjct: 324 NSFYKTKNALDESIEQVIHTLIEAFILVFIVVFIFLQDFRSTLIPAIAVPVSILGTFFFM 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            LFG   NL  + A++  IG  V+D +VV + +    K+    +  +    +++ E  G 
Sbjct: 384 NLFGFSINLLTLFALVLAIGIVVDDAIVVVEAVH--AKMEQKRLGAKAATTEAMREITGA 441

Query: 772 SVYTSMAAFISVLPM---AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  S+   ++ + +    + G + I    FA  M+  IV++A +++ ++  +      
Sbjct: 442 LI--SITLVMAAVFLPVGFMTGSTGIFYRQFAFTMSIAIVISAVNALTLSPALAALFLK 498



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 77/252 (30%), Gaps = 16/252 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V ++ +            S  N           +       A   + E  K+++ 
Sbjct: 797  KTGEMVPINTLVKLTRVFGSETASRYNLFNSIQVNAIPKPGYSSGDAIRAIQETAKEELP 856

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTL 700
                            +   E+   G   VI     + +Y  +      +   L  I ++
Sbjct: 857  SGFAY-------EFSGQTREEISSGGQSTVIFILCLVFVYFLLSAQYESYLLPLAVILSI 909

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               I        L GIE N+    A++ LIG    + +++ +     ++         D 
Sbjct: 910  PTGIFGVFVVLGLTGIENNIYVQVALIMLIGLLAKNAILIIEFA---VQRRKAGRGLVDA 966

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAA 817
              ++    +   + TS+A    + PM++  G         +I  A G++      +FI  
Sbjct: 967  AIEAARLRIRPIIMTSLAFVFGLFPMSIATGPSAQGNHSISIGAAGGMLSGVILGLFIIP 1026

Query: 818  PILLFIYDWRAK 829
             + +     + K
Sbjct: 1027 VLFVIFQHLQEK 1038


>gi|300741592|ref|ZP_07071613.1| protein-export membrane protein SecD [Rothia dentocariosa M567]
 gi|300380777|gb|EFJ77339.1| protein-export membrane protein SecD [Rothia dentocariosa M567]
          Length = 562

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 101/533 (18%), Positives = 187/533 (35%), Gaps = 45/533 (8%)

Query: 2   RNNPWLVI--LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           R +P          +  + +L+A   F        + +        L LDL GG+ ++L 
Sbjct: 3   RRSPLAAARGALVSMVLLMILMAAGIFGTTQAGGSWGA-------KLALDLSGGTQMILS 55

Query: 60  VDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQ---IQNKITLSFADSRFKENI 111
              +           L+   + +R  +   G+    +       N + +S   +   E  
Sbjct: 56  PKVNGSNDTNVSQEQLKQAVEIIRQRVDGAGVSEAEVTTSFGSGNNVVVSVPGNISPET- 114

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
            + +          +                              +   E+S     +  
Sbjct: 115 RELIQASANMTFRAV-----------------------LQSSSPGTAVPEESRTPDDKLP 151

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
                 +           L +    +D S         A      V  +           
Sbjct: 152 KPTAEPQDGSDTNWITPELYKEFEAKDCSAGNNEDAEAADPKKAIVACSTDGNEKYILGP 211

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
              + +        +         G                             + ++  
Sbjct: 212 VELNGNDISTASHSQETSGQGINTGRWTVNIEFNDSARETFKNVTTRLNAIRGQSPNDPR 271

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
              A++LDG+VL++PV    I  GK QI+GNF+ + A  LA  L+ G+LPI  +I  E+ 
Sbjct: 272 SRFAIMLDGKVLSSPVSQAVIADGKPQITGNFSEQEAKNLADQLKYGALPISFSIQSEQQ 331

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           + A LG++ +  G    + GL+L+ ++ +  Y   G V   S+ +  I++   + LLG  
Sbjct: 332 ISATLGAEQLKVGILTGLIGLLLVFVYSLFQYRLLGFVTMASLVVAGIISYEAIVLLGWA 391

Query: 412 LT----LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           L     L  +AG+++ IG   DS I+  ERIR+E R  +++  ++  G+ RA  TI  S 
Sbjct: 392 LNYRLSLAGVAGLIVAIGATADSFIVYFERIRDEIRAGRTIPAAVSHGWKRASRTILASK 451

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              L+A VVL+    G+V+GFA T+GL+ +  +          +  +   +  
Sbjct: 452 AVNLLAAVVLYVVSVGSVKGFAFTLGLTAIADLVVVYLFTHPALTLLANTRYF 504



 Score = 85.9 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 19/152 (12%), Positives = 52/152 (34%), Gaps = 8/152 (5%)

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN----LTAVAAVLTLIGYSVN 735
           + +Y   +++       + +L++    +     L G   N    L  VA ++  IG + +
Sbjct: 355 VFVYSLFQYRL-LGFVTMASLVVAGIISYEAIVLLGWALNYRLSLAGVAGLIVAIGATAD 413

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V ++R+R  ++      +    +           + +     ++ + + V     + 
Sbjct: 414 SFIVYFERIRDEIRA---GRTIPAAVSHGWKRASRTILASKAVNLLAAVVLYVVSVGSVK 470

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            FA  +    +           P L  + + R
Sbjct: 471 GFAFTLGLTAIADLVVVYLFTHPALTLLANTR 502


>gi|254501538|ref|ZP_05113689.1| RND transporter, HAE1/HME family, permease protein [Labrenzia
           alexandrii DFL-11]
 gi|222437609|gb|EEE44288.1| RND transporter, HAE1/HME family, permease protein [Labrenzia
           alexandrii DFL-11]
          Length = 1039

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/683 (12%), Positives = 189/683 (27%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   +I   G+       L    +   P                         
Sbjct: 8   RRPVLAAVASLLIIVFGI-----GVLTSIPVRELPDIDTAVVT---------VTTTYRGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  L    +   + +        S R+ ++++ + F      +  A+ V   +  
Sbjct: 54  APEVIDTDLTEIIEGSVAGVAGVKTISSSSRRGRSRVVVEFEVGNDIDAAANDVRDAVSR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  D  +  +V        ++      D     A E +  + R  ID++       
Sbjct: 114 VRADLPADADEPQVVKNDADSDPVMRLAVTSD--RLSAAEITDYVDRYVIDRLATVPGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D   +     T   +       N             + S     
Sbjct: 172 SIDTYGGRPKAVRVWLDRRAMAARNLTVVDIERALQRANLELPAGELESDVRQLSVRLDS 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                     T     ++  + +G           +   +A      
Sbjct: 232 RL--------------------PTVDAFSNVVIERVGGYPIRLRDIATVVAGVAQEDTIV 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++Q +     E        L+          V   +      S   
Sbjct: 272 RNNGKTAVGLAVIRQSQSNTLAISEAVREEIDALQPNLPADMQIEVGSDDAIFVGASIRE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +  GLV++V+ + +   +  L+   +I + +I T A +S LG ++ + ++  ++
Sbjct: 332 VVIALGVSLGLVVLVILLFLRSLRATLIPAITIPIALIGTFAAISALGFSVNVLTLLALL 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I+      +S   +  +G  +    +  +++T +   V L F  
Sbjct: 392 LAIGLVVDDAIVVLENIQRRIDLGESPLMASFLGTRQVTFAVLATSMTLIAVFVPLSFLQ 451

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL--IPD 536
           G   R    F   M  +++IS F A++   A+   I+   K      N  +      +  
Sbjct: 452 GQVGRLFVEFGFVMASAVVISTFVALTACPALASRILTRSKKPQAGSNEDTPAETLVLRW 511

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                 +  R   V +++  SI ++  +    L   +       +  +       S V  
Sbjct: 512 FRKGVTLAVRMPLVILALAGSIAALGFVVYEQLPRELTPSEDRGIVFVPLSAPQGSTVGF 571

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             ++ +  +   +      +      Y           + +      +            
Sbjct: 572 TDQASRQVEGIAEPLAASGDIETVFTYTGTWGRQNRAFVVLRLADWEDREKSHRDV-VRA 630

Query: 657 VGPKISRELIRKGIVGVIISAIA 679
           + P + +    +G          
Sbjct: 631 MIPSMGQITAARGFPITPAGLGL 653



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 67/216 (31%), Gaps = 6/216 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V  Q Q         V E +      +     I+        +   +    I   +   +
Sbjct: 283 VIRQSQSNTLAISEAVREEIDALQPNLPADMQIEVGSDDAIFVGASIREVVIALGVSLGL 342

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +L+ +         L    T+ + +  T    +  G   N+  + A+L  IG  V+D +
Sbjct: 343 VVLVILLFLRSLRATLIPAITIPIALIGTFAAISALGFSVNVLTLLALLLAIGLVVDDAI 402

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG--- 795
           VV + +    +      S          +     + TSM      +P++   G V     
Sbjct: 403 VVLENI---QRRIDLGESPLMASFLGTRQVTFAVLATSMTLIAVFVPLSFLQGQVGRLFV 459

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            F   MA  +V++   ++     +   I     K  
Sbjct: 460 EFGFVMASAVVISTFVALTACPALASRILTRSKKPQ 495



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 63/164 (38%), Gaps = 7/164 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++ + + + +  +F+ +      + T+ L +   +   A  G+  N+ +   ++ L+G 
Sbjct: 856  ALALLIVFLVLAAQFESFVHPFVIMLTVPLGVAGAVFSLAAAGLSLNIYSQIGIILLVGL 915

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ +      +L          +  S    L   V T ++  +  +P+ +    
Sbjct: 916  MAKNGILIVEFAN---QLRDEGKDVTQAVIDSTVLRLRPIVMTVVSTVLGAMPLVLASGA 972

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G     +    +  G++++   ++F+   +   +  +    + I
Sbjct: 973  GAESRIAIGTVIVGGLLLSGILTLFLTPVLYSLLARFTEPRSAI 1016


>gi|150017557|ref|YP_001309811.1| acriflavin resistance protein [Clostridium beijerinckii NCIMB 8052]
 gi|149904022|gb|ABR34855.1| acriflavin resistance protein [Clostridium beijerinckii NCIMB 8052]
          Length = 1057

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/676 (10%), Positives = 179/676 (26%), Gaps = 43/676 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +   +   +G++               P                         
Sbjct: 9   KRPAAMWMAVILFIGLGIMGYKSMGADLMPSMNIPVIS--------------VMTTYNGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +    +   +  +    +T++F  S         V   ++ 
Sbjct: 55  SAEDIKKDIVKPIEDAVSGISGVDVLNSTSGEGYGTVTITFKMSANINTAYLDVQKAVEL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            ++KL     K +L       I +++   N D        QS         ++       
Sbjct: 115 TSAKLPKAADKPILYKMDMSSIPMMIVSINGDASYEELYNQSDI----LKQRLEKVPGVG 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     QL  + D + +         +       N +              +  Q 
Sbjct: 171 NISLLGADKKQLMIKIDKATMEYYGVNIDTLMGTLQASNVNVPAG----------EIKQE 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++  V I G   +             V ++                 I   +       
Sbjct: 221 GLDQSVRIIGQFSSV----------DAVRNLLIPAGNGVTIRLGDIAKIDLEVPDANVLT 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +   ++  +     ++       ++          +          S + 
Sbjct: 271 RFGGNKTIAMMLGKQSDSNVVEVADSVKKELEDVKKTLPKGTEVNILMDTTTFINSSLTQ 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K   A        VL++     +  LV   +I  +++ T  ++  +  TL + S+ G+ 
Sbjct: 331 IKHNLAEGIITTAFVLYLFFRSFRSSLVVLIAIPTSLVATFFMMYQMHFTLNMLSLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSL---DMGFSRAYSTIFDSNITALIATVVLF 478
           L +G  VD +I+V E I+      ++   +          A   I   ++       ++ 
Sbjct: 391 LVVGTLVDDSIVVIENIQRHMDMGKNPIAAAIEGRKEVGMAAIAITLCDVVVFAPVSLVS 450

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F +T+  + + S+  + +I   +   +++ + +K + +      FL    I
Sbjct: 451 GLVGQMFREFGLTIVAATMFSLIVSFTITPMLSSRLLKNENLKGVLVKKEKSKFL--SKI 508

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
             +F++            +  S   L        I      +  +       +  +    
Sbjct: 509 NFKFIKIISSKFNKINAKTEGSFDKLVETYKKALIWSLDNRKKVLAIVVAGVVLSIMLIP 568

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                 +             ++L           +V E+ K         +        G
Sbjct: 569 MGAIKSEFIPMADQSSLQISMKLAPGSTLKQTDEKVSEVEKYLQDTKEVKNYFSLIGHDG 628

Query: 659 PKISRELIRKGIVGVI 674
              + + I +  + ++
Sbjct: 629 EATADKSIAQIFINLV 644



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 75/216 (34%), Gaps = 7/216 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E    +              V + +  K+  +        +     K   E      + +
Sbjct: 822  EDKQDMATVEANLQGRVLGEVTDDINAKLKALSVPDGYSISFGGNQKQMAESFSSLGLAL 881

Query: 674  IISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              S   + +I + +   +      +  L   I    G  AL G   NL ++  ++ L G 
Sbjct: 882  CASLALVYMILVVLYESFLTPFIRMMALPCAIIGAFGLLALTGQTLNLMSIIGLIMLEGL 941

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  +  ++ D       L    ++ RD + +S    L   + TS    +S+LP+A+    
Sbjct: 942  ASKNGTLLID---YTNTLMKRGMNLRDALIESGATRLRPIIMTSATMIVSMLPVALSMGE 998

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  +  S AI +  G+V +   S  +   I   + D
Sbjct: 999  GTEMKKSMAIVIIGGMVASTILSPIVLPIIYTLMDD 1034



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 87/254 (34%), Gaps = 13/254 (5%)

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            N  I    G+ + +     +DL V  +N+ +   G+ +     G+++    ++      
Sbjct: 239 RNLLIPAGNGVTIRLGDIAKIDLEVPDANVLTRFGGNKTIAMMLGKQSDSNVVEVADSVK 298

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                V + + K     + + T         +I   L    I        A ++Y++ R 
Sbjct: 299 KELEDVKKTLPKGTEVNILMDTTTFINSSLTQIKHNLAEGIIT------TAFVLYLFFR- 351

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L  +  +   +  T           N+ ++  +  ++G  V+D +VV + +    
Sbjct: 352 SFRSSLVVLIAIPTSLVATFFMMYQMHFTLNMLSLMGLSLVVGTLVDDSIVVIENI---Q 408

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGI 805
           +      +      +   E    ++  ++   +   P+  V G  G +   F + +    
Sbjct: 409 RHMDMGKNPIAAAIEGRKEVGMAAIAITLCDVVVFAPVSLVSGLVGQMFREFGLTIVAAT 468

Query: 806 VVAASSSIFIAAPI 819
           + +   S  I   +
Sbjct: 469 MFSLIVSFTITPML 482


>gi|89896105|ref|YP_519592.1| hypothetical protein DSY3359 [Desulfitobacterium hafniense Y51]
 gi|89335553|dbj|BAE85148.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1043

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 68/621 (10%), Positives = 171/621 (27%), Gaps = 55/621 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++   ++  +G +      L +  +D FP       I                 
Sbjct: 9   KRPVTIIMTVLIVILLGTVS-----LTRLPIDLFPEFELPMAI---------VMTEYSGV 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S  +   I   +  +  + +  SF           ++   +  
Sbjct: 55  GPQEIEKLITNPIEGAVSSTENIDIVTSTTTEGTSIVMASFKTGTDMNFATLQMREKVDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L       +++      + I+    +   V     +       +   +I   +   
Sbjct: 115 IKFALPEGAGSPMVLKIDISMMPIMQLTMSSANV--DLAQLQALAEDEIKPRIERVKGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++  +    +++    + + +S      N +             +     
Sbjct: 173 SVSISGGYENEVKIKTHQEKMQGYGLSISTLSSILAAENLNSPAGEVKKGNQDLTIRTTG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   EI                     ++        +       ++      V    
Sbjct: 233 EFQTLQEIE--------------------NLLIPLNTGGQVRLKDIADVELGHTDVTTIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++ ++     E        L+A    + L             + + 
Sbjct: 273 RTNGLQSVSIAIQKQSGVNTVAVAEDITKAIGELKAEFPELTL-DTVYDESVYIKETINT 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   L + +LF+     +   +   +I + V+ T A L  +  ++ + ++ G+ 
Sbjct: 332 VFKEALLAGILAIGILFVFFHNLRTTFITATAIPIAVMATFACLYFMDVSINMMTLGGLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD NI+  E I        S F +   G S     I  S +T +   + + F  
Sbjct: 392 LAMGRLVDDNIVALENIYRFREAGHSKFDAAIKGVSEVGMAITASTLTTVAVFLPIVFVE 451

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFII---------------RYKKMKSI 523
           G      R  A+T+G+S+  S+  ++++V A+   I+                    +  
Sbjct: 452 GLTATLFRDLALTVGISLGASLLVSLTLVPALSAKIMKVGEIPVGRKGLRGLFDGFGRGF 511

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           D             +       +   VG  ++F +     LF           G + + V
Sbjct: 512 DNGFGRIEKSYRRFLHYALGHRKTIVVGSILIFVLSGATTLFVGAEFMPSSDAGQMTVSV 571

Query: 584 LANRPVDLSVVRSNLESLQIG 604
                  L    + +  ++  
Sbjct: 572 KLPDGAQLEDTDAAIAEVEKH 592



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 70/243 (28%), Gaps = 6/243 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +     V L  +              +    +   +   +    ++VA    +    
Sbjct: 244 LIPLNTGGQVRLKDIADVELGHTDVTTISRTNGLQSVSIAIQKQSGVNTVAVAEDITKAI 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++    P  T+         I   +       ++   +A+ I               T 
Sbjct: 304 GELKAEFPELTLDTVYDESVYIKETINTVFKEALLAGILAIGILFVFFHNLRTTFITATA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T        +  N+  +  +   +G  V+D +V  + +    +      S  D
Sbjct: 364 IPIAVMATFACLYFMDVSINMMTLGGLSLAMGRLVDDNIVALENI---YRFREAGHSKFD 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              K ++E       +++      LP+        ++    A+ +   +  +   S+ + 
Sbjct: 421 AAIKGVSEVGMAITASTLTTVAVFLPIVFVEGLTATLFRDLALTVGISLGASLLVSLTLV 480

Query: 817 API 819
             +
Sbjct: 481 PAL 483



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 82/227 (36%), Gaps = 12/227 (5%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 V              V   ++ K+      +          +   +  +   + +
Sbjct: 808  SGQARVVHVSSDIVGRDLVSVTNDIQAKLNNYPLPNGYTYDMGGENEEMVKSFQDLGMAL 867

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDI-TKTLGFFALFGIEFNLTAVAAVLTLIG 731
            I++ + + + +  +F+        I +L +      LG F +     ++ A   ++ L G
Sbjct: 868  ILAIVLVYMILAAQFESLIHPFTIIFSLPMGFSGGMLGLF-ITRSTISVPAFIGLILLTG 926

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
              V++ +V+ D +    K         + I+ +    L   + TS+A  + ++PMAV   
Sbjct: 927  IVVSNAIVLVDYIN---KRREMGDGREEAIENAGPIRLRPIMMTSLATALGLIPMAVGIG 983

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF---IYDWRAKNAR 832
             G   +   AI + FG+ ++  S++ +   I        ++  +  +
Sbjct: 984  EGAETMAPMAIVVIFGMTLSTLSTLILVPVIYTINEDFKNFLKRKGK 1030


>gi|296391082|ref|ZP_06880557.1| multidrug efflux protein [Pseudomonas aeruginosa PAb1]
          Length = 1018

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 159/524 (30%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G+         + ++  +P                    +    
Sbjct: 9   RRPVLASVVSLLIVLLGM-----QAFSKLVIREYPQMENALIT---------VTTLYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + G++     +  +  +         RQ  + I++        + +  ++      
Sbjct: 55  NAETIQGYITQPLQQSLASAEGIDYMTSVSRQNYSTISIYARIGANTDRLVTELLAKSNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D +  +L        +++      +Q+ +   + +  + R    ++       
Sbjct: 115 VKSQLPPDAEDPVLQKEAADASALMYISFYSEQMNN--PQITDYLSRVIQPKLATLPGIA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP ++     T  +++      N          + +  S     
Sbjct: 173 EAEILGNQVFAMRLWLDPVKMAAFGVTAGEINQAVQQYNFLAAAGEVKGQLVVTSVNAST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +    I     G RR        +    A      
Sbjct: 233 DLKSP--------------------QAFAAIPVKTDGDRRVLMGDVARVELGAASYDAIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                        G    +    I+        L     P     +          S   
Sbjct: 273 SFNGIPSVYIGIKGTPSANPLDVIKEVRAKMPELEEQLPPNLKVSIAYDATRFIQASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   +I L++I  L  +  +G ++ L ++  +V
Sbjct: 333 VVKTLGEAVLIVIVVVFLFLGAFRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD  I+V E I     + +  F +   G       +    IT       + F  
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIEEGKPPFEAALEGAREIAVPVVSMTITLAAVYAPIGFLT 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   + FA T+  +++IS   A+++   M   ++R+++  S
Sbjct: 453 GLTGALFKEFAFTLAGAVIISGIVALTLSPMMCSRLLRHEENPS 496



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L  + T+ L +   L F    G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 FRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                    +   +   E     V  ++       P+       G++   FA  +A  ++
Sbjct: 412 HIEEGKPPFEAALEGAREIAVPVVSMTITLAAVYAPIGFLTGLTGALFKEFAFTLAGAVI 471

Query: 807 VAASSSIFIAA 817
           ++   ++ ++ 
Sbjct: 472 ISGIVALTLSP 482



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVIMVTVPLSICGALIPLFLGVSSLNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N   +   +  R+ I+++    L   + T+ A  + V+P+ +    
Sbjct: 911  ISKHGILIVE--FANQLRHEQGLERREAIEQAAAIRLRPVLMTTAAMVLGVIPLILATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        I +A G+ V    ++F+   I   +  
Sbjct: 969  GAVSRFDIGIVIATGMSVGTLFTLFVLPCIYTLVAR 1004


>gi|219558590|ref|ZP_03537666.1| preprotein translocase subunit SecD [Mycobacterium tuberculosis
           T17]
 gi|289570758|ref|ZP_06450985.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           T17]
 gi|289544512|gb|EFD48160.1| preprotein translocase subunit secD [Mycobacterium tuberculosis
           T17]
          Length = 573

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 117/539 (21%), Positives = 215/539 (39%), Gaps = 43/539 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +   ++  IG+ + +     +                LG+DL+GG+ + L     D  
Sbjct: 12  RYLSVFLVMLIGIYLLVFFTGDKHTAP-----------KLGIDLQGGTRVTLTARTPDGS 60

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQG 121
                 L      + + +   G+    +    + + ++    D     N+     L+++ 
Sbjct: 61  APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNI--------------------DQVISHAIE 161
           V + +               E  +                            Q  + +  
Sbjct: 121 VLNSMPAQLAAEEPQPALSAEPQLPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
            +               +  ++  + RI  +    Q  ++  Q++    + +  +     
Sbjct: 181 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281
           +             +D     +     ISG  +  AT+  D +    VVD+ F    A  
Sbjct: 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300

Query: 282 FFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN---FTIETAGILAAMLRAG 338
           + + T  +IG   A  LD +V++AP I +AIP G+ QISG    FT  TA  LA +L+ G
Sbjct: 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 360

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
           SLP+     E + V A LG  S+  G  A   GL+L++++ ++ Y   GL+   S+  + 
Sbjct: 361 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 420

Query: 399 ILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
            +  A+L LL      TL L  IAG+++GIG   DS ++  ERI++E R+ +S   ++  
Sbjct: 421 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 480

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
           G++RA  TI   N    +A  VL+F   G V+GFA T+GL+ ++ +     +   ++  
Sbjct: 481 GWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYL 539



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 23/136 (16%)

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDK--------------------VVVYDRMRK 746
            LG      +  + + V A+L L+G  +N                      VV ++R++ 
Sbjct: 407 VLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKD 466

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++      SFR  + +         V  +   F++   +       +  FA  +    +
Sbjct: 467 EIRE---GRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTI 523

Query: 807 VAASSSIFIAAPILLF 822
           +       +  P++  
Sbjct: 524 LDLVVVFLVTWPLVYL 539


>gi|159899623|ref|YP_001545870.1| protein-export membrane protein SecD [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892662|gb|ABX05742.1| protein-export membrane protein SecD [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 538

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 111/519 (21%), Positives = 208/519 (40%), Gaps = 61/519 (11%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-VDEDDF- 65
           VI   ++  + + +A                       LGLDL+GGS + L   D ++  
Sbjct: 37  VISALVVTIVAVALATWIVFFPKSFQSLTG--RDVSTHLGLDLQGGSQIFLRPADPNEAD 94

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           +   L+  +  +   +   G+    ++    + I +     +     ++ +         
Sbjct: 95  LAAKLENAAGVIERRVNGLGVSESVVQVVNSDSIVVELPGVKDPAAASEALKGAGNLEFI 154

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                   +     T       ++      V       + + +         +  T    
Sbjct: 155 DPQGQYLPDGTEVCTTATPRYPITVQLPSSVTGTTGVTTTDSLSNTNPLSSTNNLTTTTP 214

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
            +             +R   L  +                                    
Sbjct: 215 TTTTERPCESPYTTIARGSDLDTS------------------------------------ 238

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
            +V ++          F             +   A +    T  NIG+P+++V+D RV++
Sbjct: 239 -QVALTTDQAGRPAVFF---------RFQTNSDSATQIASFTSQNIGRPMSIVVDNRVIS 288

Query: 305 APVINQAIPSG------KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           +P IN ++P            +       A  L   L+ G+LP+ L     R++ A LG+
Sbjct: 289 SPQINGSLPGEGIITMGSTGTTVAEQNSQAQALQNQLKYGALPVTLIEDSNRSISATLGN 348

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           DSI     A   GL+ ++LFM++ Y   GL+AD ++ +  IL+ A+ +L+  TLTLP IA
Sbjct: 349 DSIDASKIAGAIGLIAVMLFMLMYYRLPGLLADIALIVYTILSFAIYNLVPVTLTLPGIA 408

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G +L IGLAVD+N+L+  RI+EE  + +S+  +++ GF+ A+ +I DSN + LI + +L+
Sbjct: 409 GFILSIGLAVDANVLIFARIKEELHRGRSLERAVEDGFNHAWPSIRDSNASTLITSFILY 468

Query: 479 F----FGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
                 G   ++GFA+T+ L I++S+FTAI++ R ++  
Sbjct: 469 VLGNGLGVSIIQGFALTLALGIIVSLFTAITVSRMLLRL 507



 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 93/274 (33%), Gaps = 8/274 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S +               +  +     Q+    ++ +   +       +        +  
Sbjct: 238 SQVALTTDQAGRPAVFFRFQTNSDSATQIASFTSQNIGRPMSIVVDNRVISSPQINGSLP 297

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           GE    +                   + K   +       +   +   +  + I    + 
Sbjct: 298 GEGIITMGSTGTTVAEQNSQAQALQNQLKYGALPVTLIEDSNRSISATLGNDSIDASKIA 357

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             I  IA+++++ + ++    L A   LI+    +   + L  +   L  +A  +  IG 
Sbjct: 358 GAIGLIAVMLFMLMYYRLP-GLLADIALIVYTILSFAIYNLVPVTLTLPGIAGFILSIGL 416

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +V+  V+++ R+++ +       S    ++   N        ++ +  I+   + V G  
Sbjct: 417 AVDANVLIFARIKEELH---RGRSLERAVEDGFNHAWPSIRDSNASTLITSFILYVLGNG 473

Query: 793 ----VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               +I  FA+ +A GI+V+  ++I ++  +L  
Sbjct: 474 LGVSIIQGFALTLALGIIVSLFTAITVSRMLLRL 507


>gi|107100041|ref|ZP_01363959.1| hypothetical protein PaerPA_01001062 [Pseudomonas aeruginosa PACS2]
 gi|116052409|ref|YP_792720.1| multidrug efflux protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587630|gb|ABJ13645.1| putative RND efflux transporter [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1018

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 159/524 (30%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G+         + ++  +P                    +    
Sbjct: 9   RRPVLASVVSLLIVLLGM-----QAFSKLVIREYPQMENALIT---------VTTLYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + G++     +  +  +         RQ  + I++        + +  ++      
Sbjct: 55  NAETIQGYITQPLQQSLASAEGIDYMTSVSRQNYSTISIYARIGANTDRLVTELLAKSNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D +  +L        +++      +Q+ +   + +  + R    ++       
Sbjct: 115 VKSQLPPDAEDPVLQKEAADASALMYISFYSEQMNN--PQITDYLSRVIQPKLATLPGIA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP ++     T  +++      N          + +  S     
Sbjct: 173 EAEILGNQVFAMRLWLDPVKMAAFGVTAGEINQAVQQYNFLAAAGEVKGQLVVTSVNAST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +    I     G RR        +    A      
Sbjct: 233 DLKSP--------------------QAFAAIPVKTDGDRRVLMGDVARVELGAASYDAIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                        G    +    I+        L     P     +          S   
Sbjct: 273 SFNGIPSVYIGIKGTPSANPLDVIKEVRAKMPELEEQLPPNLKVSIAYDATRFIQASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   +I L++I  L  +  +G ++ L ++  +V
Sbjct: 333 VVKTLGEAVLIVIVVVFLFLGAFRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD  I+V E I     + +  F +   G       +    IT       + F  
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIEEGKPPFEAALEGAREIAVPVVSMTITLAAVYAPIGFLT 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   + FA T+  +++IS   A+++   M   ++R+++  S
Sbjct: 453 GLTGALFKEFAFTLAGAVIISGIVALTLSPMMCSRLLRHEENPS 496



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L  + T+ L +   L F    G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 FRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                    +   +   E     V  ++       P+       G++   FA  +A  ++
Sbjct: 412 HIEEGKPPFEAALEGAREIAVPVVSMTITLAAVYAPIGFLTGLTGALFKEFAFTLAGAVI 471

Query: 807 VAASSSIFIAA 817
           ++   ++ ++ 
Sbjct: 472 ISGIVALTLSP 482



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVIMVTVPLSICGALIPLFLGVSSLNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N   +   +  R+ I+++    L   + T+ A  + V+P+ +    
Sbjct: 911  ISKHGILIVE--FANQLRHEQGLGRREAIEQAAAIRLRPVLMTTAAMVLGVIPLILATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        I +A G+ V    ++F+   I   +  
Sbjct: 969  GAVSRFDIGIVIATGMSVGTLFTLFVLPCIYTLVAR 1004


>gi|15599571|ref|NP_253065.1| multidrug efflux protein [Pseudomonas aeruginosa PAO1]
 gi|218893466|ref|YP_002442335.1| multidrug efflux protein [Pseudomonas aeruginosa LESB58]
 gi|254244815|ref|ZP_04938137.1| hypothetical protein PA2G_05687 [Pseudomonas aeruginosa 2192]
 gi|9950604|gb|AAG07763.1|AE004853_6 probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa PAO1]
 gi|126198193|gb|EAZ62256.1| hypothetical protein PA2G_05687 [Pseudomonas aeruginosa 2192]
 gi|218773694|emb|CAW29508.1| probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa LESB58]
          Length = 1018

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 159/524 (30%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G+         + ++  +P                    +    
Sbjct: 9   RRPVLASVVSLLIVLLGM-----QAFSKLVIREYPQMENALIT---------VTTLYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + G++     +  +  +         RQ  + I++        + +  ++      
Sbjct: 55  NAETIQGYITQPLQQSLASAEGIDYMTSVSRQNYSTISIYARIGANTDRLVTELLAKSNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D +  +L        +++      +Q+ +   + +  + R    ++       
Sbjct: 115 VKSQLPPDAEDPVLQKEAADASALMYISFYSEQMNN--PQITDYLSRVIQPKLATLPGIA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP ++     T  +++      N          + +  S     
Sbjct: 173 EAEILGNQVFAMRLWLDPVKMAAFGVTAGEINQAVQQYNFLAAAGEVKGQLVVTSVNAST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +    I     G RR        +    A      
Sbjct: 233 DLKSP--------------------QAFAAIPVKTDGDRRVLMGDVARVELGAASYDAIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                        G    +    I+        L     P     +          S   
Sbjct: 273 SFNGIPSVYIGIKGTPSANPLDVIKEVRAKMPELEEQLPPNLKVSIAYDATRFIQASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   +I L++I  L  +  +G ++ L ++  +V
Sbjct: 333 VVKTLGEAVLIVIVVVFLFLGAFRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD  I+V E I     + +  F +   G       +    IT       + F  
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIEEGKPPFEAALEGAREIAVPVVSMTITLAAVYAPIGFLT 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   + FA T+  +++IS   A+++   M   ++R+++  S
Sbjct: 453 GLTGALFKEFAFTLAGAVIISGIVALTLSPMMCSRLLRHEENPS 496



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L  + T+ L +   L F    G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 FRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                    +   +   E     V  ++       P+       G++   FA  +A  ++
Sbjct: 412 HIEEGKPPFEAALEGAREIAVPVVSMTITLAAVYAPIGFLTGLTGALFKEFAFTLAGAVI 471

Query: 807 VAASSSIFIAA 817
           ++   ++ ++ 
Sbjct: 472 ISGIVALTLSP 482



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVIMVTVPLSICGALIPLFLGVSSLNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N   +   +  R+ I+++    L   + T+ A  + V+P+ +    
Sbjct: 911  ISKHGILIVE--FANQLRHEQGLGRREAIEQAAAIRLRPVLMTTAAMVLGVIPLILATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        I +A G+ V    ++F+   I   +  
Sbjct: 969  GAVSRFDIGIVIATGMSVGTLFTLFVLPCIYTLVAR 1004


>gi|313902492|ref|ZP_07835894.1| acriflavin resistance protein [Thermaerobacter subterraneus DSM
           13965]
 gi|313467290|gb|EFR62802.1| acriflavin resistance protein [Thermaerobacter subterraneus DSM
           13965]
          Length = 1041

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 72/599 (12%), Positives = 149/599 (24%), Gaps = 45/599 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              ++ +L   +  +G        LP   +D  P       +                  
Sbjct: 10  RPVFVTVLVIALVLLGAF-----LLPAMPVDLLPQLELPVVV---------VATSYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  S +          +     + L        +    +V   +  V
Sbjct: 56  PAELEARVVEPLEQAVSTINGVKGVRSIAQPGSALVILELNWGTDLDFTVLEVQKRIDAV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D     ++T       +V      D     A +       +    +   +    
Sbjct: 116 RGLLPDDAGSPRVLTLDPSAEPVVTVGVTGDLP---AGQLQALAEDRVAPALEQVDGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP+RL     + A ++                        G   L
Sbjct: 173 VGVVGLRHREVRVILDPARLEAYGLSPALVARAL--------------------GGGATL 212

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        +    + + V +                  + + LA       
Sbjct: 213 ATAGSVDRGSAALSVRLDAQYTSARDVAEAVVTTPAGAAVRIADIATVEEALADPAQLAY 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L    + Q         +              L     P                S    
Sbjct: 273 LDGKPVVQLQVLKATDGNTLAVSRGVEQALQRLAPQLPPGVELRTILDQGDFIQESVRTV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   + + VL++ +   +  LV    + ++V+ + A+L+  G TL + S+ G+++
Sbjct: 333 AEHGVLGGLIAVAVLYLFLGNWRTTLVVGLMLPVSVVGSFAMLAAAGQTLNIVSLGGLLI 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           GIG  VD  I+V E I     +        + G +   + +  S I        +   GG
Sbjct: 393 GIGSLVDFAIVVIESIHRYRMRGTPPLQGAEEGTAEVAAAVTASAIAQGAVFFPMMLTGG 452

Query: 483 ---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-----IDINPLSRFFLI 534
                    A+ +  S + ++F A++ V  +   ++      S                 
Sbjct: 453 LAAELFTPLALAVIFSHVAALFGAVTFVPMLAARVLGSHYQPSGLLAGFHRAIERLEQGY 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
              +A    R           F        +           G IQ+ V       L  
Sbjct: 513 RRLLAGSLRRRGLVMAAGLASFVASLAAAPWLGSEFLPPSDSGQIQVTVRTPPGTRLEE 571



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +    V +      S     V   +++++  +     +  T     +   E  R   + +
Sbjct: 800  DGRRQVIVAVHLDGSRPLGEVSAALQRELASMDWPGGMTWTVAGEAERMNETFRSLGLSI 859

Query: 674  IISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +F+ +F  L  + +L   +   +   AL  +   +TA+   L L+G 
Sbjct: 860  VLAVLLVYLIMAAQFESFFHPLVILFSLPPTVVGAVAGMALHRLPIGVTALLGFLMLVGV 919

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             +N+ +V+ D       L    +     + ++    L   + T +   + ++P A   G 
Sbjct: 920  VMNNAIVLVD---YTNVLRRRGMPRDQALLQAGPVRLRPILMTMLTTNLGLVPFAYLPGP 976

Query: 793  V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                +   A+ + +G++++   ++ +       + D   +  R+
Sbjct: 977  SSELLRPLAVVVIYGLLMSTLVTLVLVPVAYSLLDDALRRLGRV 1020



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 77/244 (31%), Gaps = 9/244 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       +    ++   L   D             V              V + +++  
Sbjct: 252 VRIADIATVEEALADPAQLAYLDGKPVV-----QLQVLKATDGNTLAVSRGVEQALQRLA 306

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            ++ P   ++     G  I   +      GV+   IA+ +       W   L     L +
Sbjct: 307 PQLPPGVELRTILDQGDFIQESVRTVAEHGVLGGLIAVAVLYLFLGNWRTTLVVGLMLPV 366

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  +    A  G   N+ ++  +L  IG  V+  +VV + +    +            +
Sbjct: 367 SVVGSFAMLAAAGQTLNIVSLGGLLIGIGSLVDFAIVVIESIH---RYRMRGTPPLQGAE 423

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +   E       +++A      PM + GG     F  P+A  ++ +  +++F A   +  
Sbjct: 424 EGTAEVAAAVTASAIAQGAVFFPMMLTGGLAAELF-TPLALAVIFSHVAALFGAVTFVPM 482

Query: 823 IYDW 826
           +   
Sbjct: 483 LAAR 486


>gi|94309545|ref|YP_582755.1| acriflavin resistance protein [Cupriavidus metallidurans CH34]
 gi|93353397|gb|ABF07486.1| multidrug efflux system, subunit B [Cupriavidus metallidurans CH34]
          Length = 1066

 Score =  142 bits (356), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/483 (11%), Positives = 134/483 (27%), Gaps = 12/483 (2%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
             + L     + +   +    +   S +        +  Q   +ITL F  +R  +  A 
Sbjct: 47  VTVNLPGANPETMASNVAQPLERQFSLIAGLSQMTSTSAQGTTQITLQFDLNRSIDAAAV 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +     +L  +              + +L    +          +         Q
Sbjct: 107 DVQAAINAAGGQLPSNLPTPPTFRKINPADAPILV-LAVQSDALPLTTVNDFADNILAQQ 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I   E         +    +  + DP++L  +  +   +         ++          
Sbjct: 166 ISQIEGVGLVNIGGQQKPAVRIQVDPAKLASMGLSMEDIRGVIAATTVNQPTGATDGATK 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +      +                      +   V +    +                
Sbjct: 226 AFNVYTNDQITRAA--------PWNDMVLAWRNGAPVRVRDVGVAVDGPENNRLAGWAFA 277

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A                  + +   +   T++        L+          V      
Sbjct: 278 GAAAPADNTFHNGRAIILAVTKQPGANVIATVDRIKAALPRLQLSIPAAVNVNVLADRTQ 337

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S++  + T  +   LV+ ++F+ +      ++   ++ L ++ T   + LLG +  
Sbjct: 338 NIRASEADVEFTLILTIVLVVGIIFVFLRDVWATVIPSITVPLALLGTAGGMYLLGYSRD 397

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + + +G  VD  I++ E I        S   +   G      TI   +++ +  
Sbjct: 398 NLSLMALTIAVGFVVDDAIVMLENIYRHVEAGMSPLEAALQGAGEIAFTIVSISVSLVAV 457

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L   G   G   R FA+T+ L+I +S+  ++++   M    ++         +    
Sbjct: 458 FIPLLLMGGIVGRLFREFAVTVTLTIAVSVIVSLTLTPMMCAKFLQPHDPAHARHHGRLY 517

Query: 531 FFL 533
              
Sbjct: 518 LMF 520



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 64/150 (42%), Gaps = 7/150 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  +  +I++++R  W   +    T+ L +  T G   L G   +  ++ A+   +
Sbjct: 350 LILTIVLVVGIIFVFLRDVW-ATVIPSITVPLALLGTAGGMYLLGYSRDNLSLMALTIAV 408

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + +    +     +S  +   +   E     V  S++     +P+ + G
Sbjct: 409 GFVVDDAIVMLENI---YRHVEAGMSPLEAALQGAGEIAFTIVSISVSLVAVFIPLLLMG 465

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           G V      FA+ +   I V+   S+ +  
Sbjct: 466 GIVGRLFREFAVTVTLTIAVSVIVSLTLTP 495



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 80/231 (34%), Gaps = 35/231 (15%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V + +      +    +E + K +  +    T+        +     +      +
Sbjct: 816  GQFPAVTISFNLAQGASLGDAVEAINKALAGMGRPRTLGGAFQGTAQAFGASLASQPYLI 875

Query: 674  IISAIAMLIYIWIRFKW---------YFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              + IA+ I + + ++                +  L+           L G +F + A+ 
Sbjct: 876  AAALIAVYIVLGLLYESYIHPLTILSTLPSAGVGALL--------VLMLGGYDFTVIALI 927

Query: 725  AVLTLI------GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
             ++ LI      G  + D  +V +R           +S RD I ++        + T+M 
Sbjct: 928  GIILLIGIVKKNGIMMVDFALVAER--------ERGMSPRDAIYEACLLRFRPIMMTTMC 979

Query: 779  AFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            A ++ LP+ +    G  +       M  G+VV+   ++F + P++    D 
Sbjct: 980  ALLAGLPLMLGHGAGSELRRPLGYAMVGGLVVSQMLTLF-STPVVYLYLDR 1029


>gi|56459711|ref|YP_154992.1| RND family efflux transporter [Idiomarina loihiensis L2TR]
 gi|56178721|gb|AAV81443.1| RND family efflux transporter [Idiomarina loihiensis L2TR]
          Length = 1035

 Score =  142 bits (356), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 75/556 (13%), Positives = 168/556 (30%), Gaps = 44/556 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    +V+L  +I   GL   +        +   P                G    L   
Sbjct: 21  RRPVLIVVLNVLIAIAGLAALM-----GVEVRELPDVDRPVV---------GVSATLPGG 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    +   + +        S  +   +I++ F      + +A +V   +  
Sbjct: 67  APETVDAEVTSILEGAAARVSGVESIQSSSEENSARISIEFRPGVDLDVVAAEVREAVNQ 126

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D ++  +        S++    + D +    + + +E       +        
Sbjct: 127 VRRELPDDVEQINVQKADSDARSVLDIAVSSDSLTQEELTRRLETD--LSPEFLAINGVA 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      L  + DP +L     +   ++    L               R +D    
Sbjct: 185 DVRLNGDRERVLRVDLDPLKLVSFGLSVTDVADALRLAPFDVPAGSL-----RSTDQRLI 239

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +  D   I+   +     + D                                A      
Sbjct: 240 VRADATAITEDQVENIIVSGDT-------------------RIGDVAQAYFAPADANSFV 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +       +A  +     + A  +   LR     +    +   +      S + 
Sbjct: 281 RLDGKPVVGLGVIRQAGSNTIEISDQALAVLERLRERFPDM-EMRITNDDAQFIRKSVAE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV+  L++ +   +  ++  FSI + +   +A + L+G ++ + ++  +V
Sbjct: 340 VVTTLAITIVLVVATLWVFIGSFRATIIPAFSIPVALFGAIAAIWLMGFSINILTLLALV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E I+           +  +     +  +  +    +   V + F  
Sbjct: 400 LATGLIVDDAIVVTENIQRRRSMGLGSRAAAVLATREVFFAVVATTAVLVAVFVPIAFLP 459

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F   +  +++IS F A+S+V A    + +     +      + F       
Sbjct: 460 STAGRLFREFGGVLAAAVVISSFVALSLVPAFTARLPKSAGQNNRFAGIGNAFKRFYKRT 519

Query: 539 AIQFMRARFWGVGISI 554
             + +   +  V +S+
Sbjct: 520 LHKALDFSWVVVVLSL 535



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 95/266 (35%), Gaps = 14/266 (5%)

Query: 571  YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                    + +   +   V +S V   +E     ++  Q         V+L      S  
Sbjct: 761  QSPQDMQNLYVSSSSGDLVPISSVSEIIEEGVSAELERQAQRRAIEVDVQLPDDMPMSDV 820

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
              ++  +  + + + + L  +              +       I++ + +L+ +  +F+ 
Sbjct: 821  VDQLRTIAGEVLPDSMGLVFLGEAATFEDTSQEIAMT-----YILAFLIVLLVLAAQFES 875

Query: 691  YFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              +   +  L +        +ALF  G   N+ +   ++ LIG    + V++ +      
Sbjct: 876  LNS-AVVVMLTVPFGIAAAIYALFLTGTSLNIYSQIGLVMLIGLLAKNSVLLVEFA---D 931

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L    +  R+ I+++    L   + T ++  +  LP+ +    G     S    +  G+
Sbjct: 932  QLRDRGLEVREAIEEASLIRLRPIMMTLVSTVLGGLPLILSSGAGAEARNSIGWVVFGGL 991

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
             +A   ++++   + L++  +    A
Sbjct: 992  GLATLFTLYLTPVLYLWLARFTKPRA 1017



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/209 (13%), Positives = 80/209 (38%), Gaps = 12/209 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWI 686
           S     VLE ++++  ++    T  + + +   ++  +    I + ++++ + + I    
Sbjct: 304 SDQALAVLERLRERFPDMEMRITNDDAQFIRKSVAEVVTTLAITIVLVVATLWVFI---- 359

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +   +    ++ + +   +    L G   N+  + A++   G  V+D +VV + +  
Sbjct: 360 -GSFRATIIPAFSIPVALFGAIAAIWLMGFSINILTLLALVLATGLIVDDAIVVTENI-- 416

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
             +  +  +  R     +  E     V T+       +P+A      G +   F   +A 
Sbjct: 417 -QRRRSMGLGSRAAAVLATREVFFAVVATTAVLVAVFVPIAFLPSTAGRLFREFGGVLAA 475

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +V+++  ++ +       +     +N R
Sbjct: 476 AVVISSFVALSLVPAFTARLPKSAGQNNR 504


>gi|27379569|ref|NP_771098.1| hypothetical protein blr4458 [Bradyrhizobium japonicum USDA 110]
 gi|27352721|dbj|BAC49723.1| blr4458 [Bradyrhizobium japonicum USDA 110]
          Length = 1035

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/516 (12%), Positives = 135/516 (26%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G++      +       FP+         G D            
Sbjct: 10  RRPVATTLLSIGLFLLGVVAYEFLPVASVPNVDFPAIFVSAS-RPGAD------------ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +       I L F   R  +  A  V   +  
Sbjct: 57  -PSVMAATVASPLERRLGEISGINQITSTSSLGVTNIQLQFDIGRNIDKAARDVQAAINA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D              + V     +      A             +I       
Sbjct: 116 SLVDLPSDLPTLPRFRKANTAGAPVFV-LALTSKTLSASAIYDVADTVLAQRISQVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +  + +P  L      T  +    V  N      +F      ++     
Sbjct: 175 DVTVSGADQPAVRVQLNPVALSNAGIATDDVRIAIVNANPLGPVGIFNGERQSETLSLNK 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                 +T K   DI                 I   +       
Sbjct: 235 --------------------QMRTAKEFRDIVIKSSNGNFVRLSDVAEIEDSVRNARSIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +   T++    L   L+                     S   
Sbjct: 275 WFNKQPAVLIQITKQGDANVIDTVDRVKALIPELKQWIPAGVDISTLVDRTSTIRASVLD 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A LV++V+F+ +      + A  S+ L +  T A + + G ++   S+  + 
Sbjct: 335 MQWTLLATAILVMLVVFVFLRRMTPTIAAGISVPLALAGTCAGMWVAGFSIDNLSLMALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E +          F +   G  +   T+   +++ + A   L F  
Sbjct: 395 ISVGFVVDDAIVMIENMFRNLEHGMRPFQAALEGAKQIGFTVVSISLSLIAAFTPLIFMD 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G  +R F++T+  +IL+S   ++++   +    
Sbjct: 455 GIVGRLLREFSLTLTFAILVSTLVSLTVTPMICAHY 490



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 73/206 (35%), Gaps = 6/206 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +  Q          RV  ++ +    I     I         I   ++      +  +
Sbjct: 284 IQITKQGDANVIDTVDRVKALIPELKQWIPAGVDISTLVDRTSTIRASVLDMQWTLLATA 343

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + ML+      +    + A  ++ L +  T     + G   +  ++ A+   +G+ V+D
Sbjct: 344 ILVMLVVFVFLRRMTPTIAAGISVPLALAGTCAGMWVAGFSIDNLSLMALAISVGFVVDD 403

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +V+ + M +N+      +       +   +     V  S++   +  P+    G V   
Sbjct: 404 AIVMIENMFRNL---EHGMRPFQAALEGAKQIGFTVVSISLSLIAAFTPLIFMDGIVGRL 460

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +  F++ + F I+V+   S+ +   I
Sbjct: 461 LREFSLTLTFAILVSTLVSLTVTPMI 486



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 75/204 (36%), Gaps = 6/204 (2%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                + +++ + E+     I+ +             +  + ++ + +AM I + + ++  
Sbjct: 825  QAATQNIQRAVEELHMPEGIRGSFDGNAGDFARTSGRQPLLILGALVAMYIVLGVLYESL 884

Query: 692  F-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               L  I+TL       L    +      + A   ++ LIG    + +++ D        
Sbjct: 885  AHPLTIISTLPSAGLGALLALQITNTPLTVIAFVGIILLIGIVKKNGIMMVDFALD--AE 942

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
                +S  + I ++        + T+MAA  + +P+ V    G  +     I +  G+ V
Sbjct: 943  RQRGLSSAEAIFEACQARFRPILMTTMAALFAGIPLVVATGPGTELRRPLGITIIGGLFV 1002

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            +   +++    I L I   R +  
Sbjct: 1003 SQILTLYTTPVIYLLIDRLRRRTG 1026


>gi|156744090|ref|YP_001434219.1| acriflavin resistance protein [Roseiflexus castenholzii DSM 13941]
 gi|156235418|gb|ABU60201.1| acriflavin resistance protein [Roseiflexus castenholzii DSM 13941]
          Length = 1171

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/545 (12%), Positives = 164/545 (30%), Gaps = 45/545 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   ++ +L  +    G+L           ++  P                   +     
Sbjct: 21  RQPVFVTMLMLLTVVFGILA-----FRSLPVNLLPDFEVPII---------AVSVPYPGA 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + ++       +  +    I L FA           V   +  
Sbjct: 67  GPESVADQVAKPIEDAVNTIEGIENITTNASEGLAVIILEFAQGTDVNRADQDVREKVNA 126

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D ++ +          IV       Q     +E    +  +    +  ++   
Sbjct: 127 IRPTLPRDVREPIFQKFDPNAAPIVSFAIAGTQNQ-SPLEVRRIVDTEISPLLQRAQGVG 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +  Q+    D  +LR      A+++      N +             +     
Sbjct: 186 SVQISGGLQRQINVLMDLEKLRAYGILPAQITRALQQANVNLGLGSITAGSQEINLRAPS 245

Query: 242 LVEDKVEISGIHLN-----------------GATANFDPKTHKPVVDISFDEMGARRFFE 284
           L+    +I+ I +                     +       + ++     + GA     
Sbjct: 246 LLHTPEDIANIQITGTSYRIGDVATIEDGVAEKRSYTRLNGVEAIIIDVRKQSGANTVAV 305

Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
                     A+     +      + +    ++ IS    +  A + A M+         
Sbjct: 306 ADNAKAAIERALANRSDLTYIIPRDSSEAVRQSTISSLEELIYASVAALMVVMMFFSGVR 365

Query: 345 NIVEERNVGADLGSDSI---------YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           N++      A +    +               + A + L+V+   +      LV    + 
Sbjct: 366 NMLVTAAAPAAIALVGLGILPAVGIPVDKVLVLAAAIGLLVVLTFIRDRN-TLVTMAGLP 424

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           + ++ T AL+ + G ++ L ++  + L +GL +D  I+V E I    ++ ++   +   G
Sbjct: 425 IILMGTFALMPVFGLSINLITLLALALCVGLVIDDAIVVRENIFRHTQRGETPRVAASKG 484

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMI 512
            +    ++    +T +   V + F  G      + F IT+ ++IL+S+  A      +  
Sbjct: 485 TAEVALSVVAMTLTVVAVFVPVTFTSGTTGIIFKSFGITIAVAILLSLVEAFMFAPMLSA 544

Query: 513 FIIRY 517
            + R 
Sbjct: 545 NLFRR 549



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 12/174 (6%)

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P +   + +  ++   I  + +L +I    +    L  +  L + +  T     +FG+  
Sbjct: 386 PAVGIPVDKVLVLAAAIGLLVVLTFI----RDRNTLVTMAGLPIILMGTFALMPVFGLSI 441

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           NL  + A+   +G  ++D +VV    R+N  +      + R    K   E     V  ++
Sbjct: 442 NLITLLALALCVGLVIDDAIVV----RENIFRHTQRGETPRVAASKGTAEVALSVVAMTL 497

Query: 778 AAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +P+    G + I   SF I +A  I+++   +   A  +   ++  + 
Sbjct: 498 TVVAVFVPVTFTSGTTGIIFKSFGITIAVAILLSLVEAFMFAPMLSANLFRRQK 551



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 56/148 (37%), Gaps = 12/148 (8%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                ++ +++S I + + +  +F  +   L  +  +            L  I+ ++T + 
Sbjct: 934  FESLLLAMLLSVIFVYMVLASQFGSFTQPLVIMVAMPFSFIGAFLALRLINIDLDITGMI 993

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ L+G  V + +++ D      +L    +     ++ +    L   + T+++     L
Sbjct: 994  GLIMLLGLVVKNSILLVDF---TNRLRRAGLDKHAALELAGAIRLRPILMTTLSLVAGAL 1050

Query: 785  PMAVW--------GGSVIGSFAIPMAFG 804
            P+A+         GG      A  +  G
Sbjct: 1051 PVAMGIHLVGTGEGGEFRKGLATVLIGG 1078


>gi|85717296|ref|ZP_01048250.1| Acriflavin resistance protein [Nitrobacter sp. Nb-311A]
 gi|85695885|gb|EAQ33789.1| Acriflavin resistance protein [Nitrobacter sp. Nb-311A]
          Length = 1031

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/516 (12%), Positives = 142/516 (27%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  IG++           +   P+      I +  +  G         
Sbjct: 10  RRPVGTTLLAIGLFLIGVVA-----YGFLPVASVPNVDFPM-IRVSANRPG--------A 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +       I + FA  R  ++ A  V   +  
Sbjct: 56  SPSVMAATVAAPLERRLGEIAGVEQITSTSALGATSIHVRFAIGRDIDHAARDVQAAINA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D              S V     +                  + ++       
Sbjct: 116 SLADLPTDLPTLPKFRKANPAASPVFL-LALTSKTMSTSALYDVADTVIVQRVSQVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S      +    +P  L     +T  +    V  N      +F             
Sbjct: 175 EVSVSGADQPAVRIALNPVALSNAGISTDDVRTAIVNANPLGPVGIFN------------ 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G      + N   +T     DI     G          ++           
Sbjct: 223 --------GGRQSETLSTNRQMRTASEFRDIIIKSSGGNFVRLSDVADVKDATRNSRSIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +   T++    L   L+          V          S   
Sbjct: 275 WFNKRPAVLIQVTKQGDANVIDTVDRVRALLPELKQWIPGGVEVSVIADRTSTIRASVED 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A LV++V+F  +      + A  S+ L +  T A + L G ++   S+  + 
Sbjct: 335 MEWTLLATAFLVMMVVFAFLRRLTPTIAAGVSVPLALAGTCAGMWLAGFSIDNLSLMALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           + +G  VD  I++ E +     +    + +   G  +   T+   +++ + A   L F  
Sbjct: 395 ISVGFVVDDAIVMIENMYRNLEQGLPPYRAALEGARQIGFTVLSISLSLIAAFTPLIFMD 454

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G  +R F++T+  +I++S   ++++   +    
Sbjct: 455 GVAGRLLREFSLTLTFAIVVSTIVSLTVTPMICAHY 490



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 74/213 (34%), Gaps = 10/213 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---- 669
            K   V +Q            ++ V+  + E+           V    +  +        
Sbjct: 277 NKRPAVLIQVTKQGDANVIDTVDRVRALLPELKQWIPGGVEVSVIADRTSTIRASVEDME 336

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              +  + + M++      +    + A  ++ L +  T     L G   +  ++ A+   
Sbjct: 337 WTLLATAFLVMMVVFAFLRRLTPTIAAGVSVPLALAGTCAGMWLAGFSIDNLSLMALAIS 396

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G+ V+D +V+ + M +N+      +       +   +     +  S++   +  P+   
Sbjct: 397 VGFVVDDAIVMIENMYRNL---EQGLPPYRAALEGARQIGFTVLSISLSLIAAFTPLIFM 453

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            G     +  F++ + F IVV+   S+ +   I
Sbjct: 454 DGVAGRLLREFSLTLTFAIVVSTIVSLTVTPMI 486



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 6/161 (3%)

Query: 673  VIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +  + +A+ I + + ++     L  I+TL       L    +      + A   ++ LIG
Sbjct: 862  IFGALVAVYIVLGVLYESLAHPLTIISTLPSAGLGALLALQITNTPLTIIAFVGIILLIG 921

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                + +++ D            +S  D I ++        + T+MAA  + +P+ V   
Sbjct: 922  IVKKNGIMIVDFALD--AERQRGLSSADAIFEACRVRFRPIIMTTMAALFAAIPLVVAIG 979

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G  +     I +  G++V+   +++    I L I   R +
Sbjct: 980  PGTELRRPLGITIIGGLLVSQILTLYTTPVIYLLIDRLRRR 1020


>gi|31793771|ref|NP_856264.1| preprotein translocase subunit SecD [Mycobacterium bovis AF2122/97]
 gi|31619365|emb|CAD94803.1| PROTEIN-EXPORT MEMBRANE PROTEIN SECD [Mycobacterium bovis
           AF2122/97]
          Length = 573

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 116/539 (21%), Positives = 218/539 (40%), Gaps = 43/539 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +   ++  IG+ + +     +                LG+DL+GG+ + L     D  
Sbjct: 12  RYLSVFLVMLIGIYLLVFFTGDKHTAP-----------KLGIDLQGGTRVTLTARTPDGS 60

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQG 121
                 L      + + +   G+    +    + + ++    D     N+     L+++ 
Sbjct: 61  APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGSEARNLGQTARLYIRP 120

Query: 122 VNSKLNVDP---KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI---- 174
           V + +   P   +     +   +      +          + +   +      D      
Sbjct: 121 VLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGAPASPQPGAQPRPYPQDPAPSPN 180

Query: 175 -------------GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
                            +  ++  + RI  +    Q  ++  Q++    + +  +     
Sbjct: 181 PTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQSTNQYMQMVALQFQATRCESDDIL 240

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281
           +             +D     +     ISG  +  AT+  D +    VVD+ F    A  
Sbjct: 241 AGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATSGMDQRGIGYVVDLQFKGPAANI 300

Query: 282 FFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN---FTIETAGILAAMLRAG 338
           + + T  +IG   A  LD +V++AP I +AIP G+ QISG    FT  TA  LA +L+ G
Sbjct: 301 WADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQISGGDPPFTAATARQLANVLKYG 360

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
           SLP+     E + V A LG  S+  G  A   GL+L++++ ++ Y   GL+   S+  + 
Sbjct: 361 SLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVLVYSLLYYRVLGLLTALSLVASG 420

Query: 399 ILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
            +  A+L LL      TL L  IAG+++GIG   DS ++  ERI++E R+ +S   ++  
Sbjct: 421 SMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEIREGRSFRSAVPR 480

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
           G++RA  TI   +    +A  VL+F   G V+GFA T+GL+ ++ +     +   ++  
Sbjct: 481 GWARARKTIVSGSAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILDLVVVFLVTWPLVYL 539



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 44/136 (32%), Gaps = 23/136 (16%)

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDK--------------------VVVYDRMRK 746
            LG      +  + + V A+L L+G  +N                      VV ++R++ 
Sbjct: 407 VLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKD 466

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++      SFR  + +         V  S   F++   +       +  FA  +    +
Sbjct: 467 EIRE---GRSFRSAVPRGWARARKTIVSGSAVTFLAAAVLYFLAIGQVKGFAFTLGLTTI 523

Query: 807 VAASSSIFIAAPILLF 822
           +       +  P++  
Sbjct: 524 LDLVVVFLVTWPLVYL 539


>gi|148252156|ref|YP_001236741.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           BTAi1]
 gi|146404329|gb|ABQ32835.1| Putative multidrug efflux transporter,AcrB/AcrD/AcrF family
           [Bradyrhizobium sp. BTAi1]
          Length = 1046

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 62/484 (12%), Positives = 143/484 (29%), Gaps = 26/484 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  S ++        +    +  T++FA     +   + V   +  V
Sbjct: 58  PSELESQVTKIIEDGVSGVEGARHIQSLITDGLSVTTITFALETNTDRAINDVKDAVTRV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  +  + L+    +  + IV              + S  +      ++       Q
Sbjct: 118 RSDLPQNVTEPLISRVDKIGLPIVTYAAISPGKTPE--QLSFFVDDVVKRELQGVRGVSQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  ++    DP RL+ +  T   +S      N    G    +     +      
Sbjct: 176 VERIGGVEREILVSLDPDRLQAMGLTAVNVSQSLRGTNVDVAGGRAEIGKNDQAIRTLAG 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   E+S   +                       G           +   +A       
Sbjct: 236 AKTLNELSNTMIPLF--------------------GGGEVRLADLGTVTDTIADRRTFAR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +           S              ++A    + L  + + +V    G+    
Sbjct: 276 FNGEPVVALGIKRAKGASDVVVAAAVQKRIDEVKAAHPDVDL-RLIDTSVEFTKGNYEAA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    A L +I++ + +   +  ++A  S+ L++      + +LG +L + S   I L
Sbjct: 335 ISTLFEGAILAVIIVLLFLRDFRATVIAAISLPLSIFPAFWAMDILGFSLNMVSFLAITL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFF 479
             G+ VD  I+  E I    R  +S + +          A   I  + I        +  
Sbjct: 395 STGILVDDAIVEIENIVRHMRMGKSPYRAALDAADEIGLAVIAISLTIIAIFAPASFMSG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   + F IT+ + +  S+  A  +   +  + +++   +      + R +      +
Sbjct: 455 IAGQFFKQFGITVSVQVFFSLLAARFVTPMLAAYFMKHHDHEDPPPGFILRAYQRIVTWS 514

Query: 540 IQFM 543
           +Q  
Sbjct: 515 VQHY 518



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 72/233 (30%), Gaps = 7/233 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +        +F  F+GE    + ++   G S          +    +            
Sbjct: 262 TVTDTIADRRTFARFNGEPVVALGIKRAKGASDVVVAAAVQKRIDEVKAAHPDVDLRLID 321

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
              + ++      I  +   + +A++I +     +   + A  +L L I        + G
Sbjct: 322 TSVEFTKGNYEAAISTLFEGAILAVIIVLLFLRDFRATVIAAISLPLSIFPAFWAMDILG 381

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+ +  A+    G  V+D +V  + +   ++      S       + +E     +  
Sbjct: 382 FSLNMVSFLAITLSTGILVDDAIVEIENI---VRHMRMGKSPYRAALDAADEIGLAVIAI 438

Query: 776 SMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           S+           + G  G     F I ++  +  +  ++ F+   +  +   
Sbjct: 439 SLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARFVTPMLAAYFMK 491



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 66/175 (37%), Gaps = 7/175 (4%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL    I  +    + +   + + F  +   +  + +L L I   +G   L G +  + 
Sbjct: 840  NELASGFITAITAGLMIVYAVLVLLFGTFLQPITILFSLPLSIGGAIGALMLTGKQLTIP 899

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
                ++ L+G    + +++ +   + +   T      + I  +  +     V T++A   
Sbjct: 900  VYIGMMMLMGIVTKNAIMLVEFAVEAIHAGTRR---DEAIIDAGMKRARPIVMTTIAMVA 956

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++P A+    GG      A+ +  G+V +   S+     + L + D      R+
Sbjct: 957  GMMPSALAVGAGGEFRSPMALAVIGGLVFSTVLSLLFVPAMFLVMDDLSTLFGRL 1011


>gi|313106905|ref|ZP_07793108.1| putative RND efflux transporter [Pseudomonas aeruginosa 39016]
 gi|310879610|gb|EFQ38204.1| putative RND efflux transporter [Pseudomonas aeruginosa 39016]
          Length = 1018

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 159/524 (30%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G+         + ++  +P                    +    
Sbjct: 9   RRPVLASVVSLLIVLLGM-----QAFSKLVIREYPQMENALIT---------VTTLYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + G++     +  +  +         RQ  + I++        + +  ++      
Sbjct: 55  NAETIQGYITQPLQQSLASAEGIDYMTSVSRQNYSTISIYARIGANTDRLVTELLAKSNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D +  +L        +++      +Q+ +   + +  + R    ++       
Sbjct: 115 VKSQLPPDAEDPVLQKEAADASALMYISFYSEQMNN--PQITDYLSRVIQPKLATLPGIA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP ++     T  +++      N          + +  S     
Sbjct: 173 EAEILGNQVFAMRLWLDPVKMAAFGVTAGEINQAVQQYNFLAAAGEVKGQLVVTSVNAST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +    I     G RR        +    A      
Sbjct: 233 DLKSP--------------------QAFAAIPVKTDGDRRVLMGDVAQVELGAASYDAIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                        G    +    I+        L     P     +          S   
Sbjct: 273 SFNGIPSVYIGIKGTPSANPLDVIKEVRAKMPELEEQLPPNLKVSIAYDATRFIQASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   +I L++I  L  +  +G ++ L ++  +V
Sbjct: 333 VVKTLGEAVLIVIVVVFLFLGAFRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD  I+V E I     + +  F +   G       +    IT       + F  
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIEEGKPPFEAALEGAREIAVPVVSMTITLAAVYAPIGFLT 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   + FA T+  +++IS   A+++   M   ++R+++  S
Sbjct: 453 GLTGALFKEFAFTLAGAVIISGIVALTLSPMMCSRLLRHEENPS 496



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L  + T+ L +   L F    G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 FRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                    +   +   E     V  ++       P+       G++   FA  +A  ++
Sbjct: 412 HIEEGKPPFEAALEGAREIAVPVVSMTITLAAVYAPIGFLTGLTGALFKEFAFTLAGAVI 471

Query: 807 VAASSSIFIAA 817
           ++   ++ ++ 
Sbjct: 472 ISGIVALTLSP 482



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 62/156 (39%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVIMVTVPLSICGALIPLFLGVSSLNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N   +   +  R+ I+++    L   + T+ A  + V+P+ +    
Sbjct: 911  ISKHGILIVE--FANQLRHEQGLGRREAIEQAAAIRLRPVLMTTAAMVLGVIPLILATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        I +A G+ V    ++F+   I   +  
Sbjct: 969  GAVSRFDIGIVIATGMSVGTLFTLFVLPCIYTLVAR 1004


>gi|310780163|ref|YP_003968495.1| acriflavin resistance protein [Ilyobacter polytropus DSM 2926]
 gi|309749486|gb|ADO84147.1| acriflavin resistance protein [Ilyobacter polytropus DSM 2926]
          Length = 1010

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 78/670 (11%), Positives = 201/670 (30%), Gaps = 43/670 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L   +  +GLL      L Q  +   P+                        
Sbjct: 10  KKPATTLMLIVTMIVVGLLS-----LSQMPVALLPNFNIPVAT---------VVTTWPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  S ++          Q  ++I + F      ++  D +   +  
Sbjct: 56  SPEDMDKLVTRKLEDAVSLVEGIKNFNSFSSQGLSQIVIEFDYGTNSDDKVDLIQTEVNK 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L  D  + +         + +L     D +                 +    +   
Sbjct: 116 IRSELPDDINEPVTDKIDIGAETSILVDYIGDDIT----SLRSTAENLIKPRFQRVKGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++  E +P +L         +       N +                 + 
Sbjct: 172 DVTVRGGLEKEVLVELNPYKLDSYNLNAVDIFNIIRQSNINIPIGEVKSGEKSYLVKIEG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E+  +I  + ++                       ++        ++           
Sbjct: 232 ELENVSQIENVVISNI--------------------NSKILRLKDVASVTLTNKDQDSFY 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        + +     +     +        L           V          S + 
Sbjct: 272 RVNGQPAVSVMVNKAEDGNIVDIADRIKADIEELSPYLPAKTYLSVGYDASKFINQSINT 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K        L  I+LF+ +   +   +   +I  ++I T A + + G +L + S+ G+ 
Sbjct: 332 VKNNAITGLVLASIILFVFLKSFRATSIIALAIPSSIIFTFAFMDMKGISLNVISLMGLS 391

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           LG+G+ VD++++V + I    ++  +S   +   G       I  S  T +   + +   
Sbjct: 392 LGVGMLVDNSVVVLDNIYRHYKELKKSPSEAAGEGAREIAMPILASTATTVAVFIPIVLR 451

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G         + T+  S+L S+  A++ V  +   I+  ++  S D   L +  +    
Sbjct: 452 EGIAKEIFSDMSYTISFSLLASLIVALTFVPMISSKILEKEEKHSEDGRLLKKIRIFYMK 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +    +  R+  + I+I+  I S+ +  T G  + +  +   Q  ++A  P  + +  + 
Sbjct: 512 LLNLTLIHRWKTLLITIILFIISVFIAGTIGGEF-MPEQDESQYTIIAELPSGMEISMAE 570

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
             S  +     +  + ++         P        + E   +       + ++++    
Sbjct: 571 RTSQLLEKRVVKEKENDEMLRYSTTGNPSQIAINVELKEKKDRNRDVFAIVDSLRSDLSK 630

Query: 658 GPKISRELIR 667
            P I   L  
Sbjct: 631 IPDIKLNLTT 640



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 84/228 (36%), Gaps = 7/228 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L      P  +SV   ++  L+I + S Q     K   V +     D          + +
Sbjct: 755 LESKIKTPAGISVKIRDVAYLKIQEGSSQVERKNKIRKVTISANLADDFTLKEAQVFMAE 814

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITT 699
           +  ++ P  T+        +   E +    + +I+S   +  I +     +      +  
Sbjct: 815 EFKKLNPPKTVSYGFGGEGQQLNEAMTDLNIALILSIFIVYFILVSQFESFVLPFIIVGA 874

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + L +        + G + ++  +  ++ L+G  VN+ +V+ D +     L     +  +
Sbjct: 875 IPLSVIGVFLGLFITGRKLDIMVMVGIIMLVGIVVNNAIVLIDYIN---LLRLRGSNMEE 931

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            + ++    L   V T++     ++P+A+    G  +    AI + FG
Sbjct: 932 ALIEAGETRLRPIVMTTLTTVFGMIPLAISRGEGAEMYNGMAIAVIFG 979



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/206 (13%), Positives = 75/206 (36%), Gaps = 8/206 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 +E +   +     LS   +      +    +    I G+++++I + +++    
Sbjct: 296 DRIKADIEELSPYLPAKTYLSVGYDASKFINQSINTVKNNAITGLVLASIILFVFL---K 352

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +         +   I  T  F  + GI  N+ ++  +   +G  V++ VVV D + ++ 
Sbjct: 353 SFRATSIIALAIPSSIIFTFAFMDMKGISLNVISLMGLSLGVGMLVDNSVVVLDNIYRHY 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           K      S  +   +   E     + ++       +P+ +  G    +    +  ++F +
Sbjct: 413 KELKK--SPSEAAGEGAREIAMPILASTATTVAVFIPIVLREGIAKEIFSDMSYTISFSL 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           + +   ++     I   I +   K++
Sbjct: 471 LASLIVALTFVPMISSKILEKEEKHS 496


>gi|113954621|ref|YP_730793.1| preprotein translocase subunit SecF [Synechococcus sp. CC9311]
 gi|113881972|gb|ABI46930.1| protein-export membrane protein SecF [Synechococcus sp. CC9311]
          Length = 333

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 121/251 (48%), Gaps = 7/251 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +          +  R           + +    ++   V L+     +     V+E V+ 
Sbjct: 82  IQEKLASLTLPAEGRDQDAETLPNLATARVQLLDRGESVVLRMPALTASQGQAVIEAVEP 141

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                      Q+ + +GP +  +L+R  ++ ++++   + +YI IR+   +A+ A+  L
Sbjct: 142 IAGPFEVG--GQSVDTIGPSLGGQLLRSSLISLLVAFAGIALYISIRYDGRYAVLALVAL 199

Query: 701 ILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + D+    GFFA  G+    E +     ++LT+ GYSVND VVV+DR+R+  +     + 
Sbjct: 200 VHDVLIVCGFFAWLGLISGLEVDSLFAVSLLTIAGYSVNDTVVVFDRIRERQREDG-DLP 258

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
               +D++++ TL R++YTS    + +L + ++GGS +  FA+ +A G++V + SSI +A
Sbjct: 259 LDAQVDRAVSATLTRTLYTSGTTLLPLLGLILFGGSTLFWFAVALAIGVIVGSWSSIALA 318

Query: 817 APILLFIYDWR 827
             +L      R
Sbjct: 319 PSLLSIWPRQR 329


>gi|332975875|gb|EGK12752.1| acriflavin resistance protein [Psychrobacter sp. 1501(2011)]
          Length = 1028

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/589 (12%), Positives = 167/589 (28%), Gaps = 35/589 (5%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
              Q  + +FP       +           + L       +   +    +   S ++   
Sbjct: 30  GFMQMKVQQFPDIDLPAVV---------VTVTLPGAAPSQLENDVAKKIENKISSIEGVK 80

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +++     ++  F   +  +   D V   +  V   L       ++   T   +  
Sbjct: 81  HMRTTLQTGVATVSTEFVLEKDIQEAVDDVRSAVGEVQGDLPAAANDPIVTKVTTAGLPA 140

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V      D V     + S  +      ++   +          +  ++  E DP  L  L
Sbjct: 141 VTYTVTADNVSPE--DLSWFVDDTINKRLSDIKGVSNVSRVGGLEREISVEVDPLSLNAL 198

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                ++S           G    V   + +      V +  E++ + +   T       
Sbjct: 199 RLPITQLSEQITGIQQDSSGGESEVGSSKQNIRVLGAVSNARELNDLQIALPT------- 251

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                                   I    A       L    +     +     S    +
Sbjct: 252 -------------GGTQRLGDLATITDGTADPSSITKLDGQTVVAFNVTRSRGASEVEIV 298

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +      A L+                                   L ++V+F+ +   +
Sbjct: 299 KLVDAELAELQKEMPNYT-ISKVFDRATPVEEDYKASLRMLIEGGLLAVVVVFLFLRNVR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             +VA  ++ L+VI T   + L   +L + S+  + L +G+ VD  I+  E I    R  
Sbjct: 358 ATIVAAVALPLSVIPTFLGMYLFDFSLNIISLLALSLVVGVLVDDAIVEVENIIRHLRMG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
           ++ + +           +  +  T +   +   F     G   R F  T  +SI  S+  
Sbjct: 418 KTPYQAAMEAADEIGLAVVATTFTLIAVFLPTAFMNGIVGQFFRQFGWTAAISIFASLMV 477

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A  +   M  +++R +K        + + +L      ++          +    S+  + 
Sbjct: 478 ARLVTPMMAAYVLRPEKNHVEKSGRIMQGYLKTVGWTLRHRWLTLGTTLLLFFASLTLVK 537

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
           LL T  +      +  + + +  +  ++ +   + +   ++  I     
Sbjct: 538 LLPTTFIPENDIDQTRVGIELTPDASLEDTSRITKMVEARVSQIPGVQS 586



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 80/254 (31%), Gaps = 7/254 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           Q+ +       L  + +  +         +            + +    V   ++++   
Sbjct: 246 QIALPTGGTQRLGDLATITDGTADPSSITKLDGQTVVAFNVTRSRGASEVEIVKLVDAEL 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ + +P  TI         +  +      + +    +A+++           + A   
Sbjct: 306 AELQKEMPNYTISKVFDRATPVEEDYKASLRMLIEGGLLAVVVVFLFLRNVRATIVAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T     LF    N+ ++ A+  ++G  V+D +V  + +   ++      +   
Sbjct: 366 LPLSVIPTFLGMYLFDFSLNIISLLALSLVVGVLVDDAIVEVENI---IRHLRMGKTPYQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     V T+       LP A      G     F    A  I  +   +  + 
Sbjct: 423 AAMEAADEIGLAVVATTFTLIAVFLPTAFMNGIVGQFFRQFGWTAAISIFASLMVARLV- 481

Query: 817 APILLFIYDWRAKN 830
            P++        KN
Sbjct: 482 TPMMAAYVLRPEKN 495



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 69/192 (35%), Gaps = 9/192 (4%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
              + E      I   +    +   EL    ++ + +  I +   + + F K       + 
Sbjct: 824  PSLQEQNIPDGISIIDQGQAESMSELFGGFVIAMSVGIICIFGVLVLLFGKVLQPFTILM 883

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             L L I        L     ++ ++   + L+G +  + +++ D     +      +S  
Sbjct: 884  ALPLSIGGAFVGLVLTNSSLSMPSMIGFIMLMGIATKNSILLVD--YAILAEREHGLSRF 941

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI-----GSFAIPMAFGIVVAASSSI 813
            D +  +  +     + T++A    +LP+ ++G   +        A  +  G+V +   S+
Sbjct: 942  DALLDACRKRARPIIMTTIAMGAGMLPL-IFGLGDVDSTFRRPMAAAVLGGLVTSTFLSL 1000

Query: 814  FIAAPILLFIYD 825
             +   +  F+ D
Sbjct: 1001 IVIPMVYTFMDD 1012


>gi|89899193|ref|YP_521664.1| acriflavin resistance protein [Rhodoferax ferrireducens T118]
 gi|89343930|gb|ABD68133.1| acriflavin resistance protein [Rhodoferax ferrireducens T118]
          Length = 1024

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/552 (12%), Positives = 156/552 (28%), Gaps = 38/552 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I   G++           +   PS      I++   L G         
Sbjct: 9   RRPVMTVLLNLAIVLAGVI-----GFRSIPVAALPSYDTP-VINVFAALPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   + +  ++    +        +    +  +TL F + R  +  A  V   L  
Sbjct: 55  NPETMASSVALPLEKQFQTVPGLKTISSTSTLGRTSLTLEFDEGRNVDAAAVDVQAALLR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D              + VL   ++        +            +   +   
Sbjct: 115 AQRSLPQDMTATPSYRKVNPADAPVLL-ISMTSPSLAPSDLQDFAEHLISPTLSTIDGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +     P  L        ++S      N +                   
Sbjct: 174 QVNVFGSKRYAVRVSVHPEALAVRNIGLDELSTALRAANVNTPVGTLDGPRQTLMLQANR 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +++  +                      D+     G           +   L  +    
Sbjct: 234 QLQNAADF--------------------ADLIVSNRGGNPVRLKEVAQVEDSLETLKSWA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++        L++        +       +   +   
Sbjct: 274 TFNGENSITLAVQRQPGANTVRVVDAIRQALPNLQSQMPQSVKLVPFLDRSVSVREALHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +      ++   S+ ++++  +ALL     +L   S+ G+ 
Sbjct: 334 VSLTLLGTIALVVLVIFLFLRRFVATMIPMLSLPVSLVGAVALLWGFSYSLDNISLLGLT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E I       ++ F +   G      TI   + + +   + +FF  
Sbjct: 394 LAVGLVVDDAIVVLENIMRHVENGEAPFPAALKGAREVGFTIISISTSLIAVFIPIFFMP 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FA+ +GL+I++S F ++++V  +    +  +  K      +  F    D +
Sbjct: 454 GVIGLLFHEFAVVVGLAIIVSAFVSLTLVPMLASRFLTGEAHKKPPGAVVRSFARGFDRL 513

Query: 539 AIQFMRARFWGV 550
              + R     +
Sbjct: 514 LAGYTRLLDIAL 525



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/217 (11%), Positives = 72/217 (33%), Gaps = 6/217 (2%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            +  N +      V+ Q           + + +    +++     +         +   L
Sbjct: 272 WATFNGENSITLAVQRQPGANTVRVVDAIRQALPNLQSQMPQSVKLVPFLDRSVSVREAL 331

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               +  +   A+ +L+      ++   +  + +L + +   +     F    +  ++  
Sbjct: 332 HDVSLTLLGTIALVVLVIFLFLRRFVATMIPMLSLPVSLVGAVALLWGFSYSLDNISLLG 391

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  V+D +VV + +   M+      +      K   E     +  S +     +P
Sbjct: 392 LTLAVGLVVDDAIVVLENI---MRHVENGEAPFPAALKGAREVGFTIISISTSLIAVFIP 448

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    G +      FA+ +   I+V+A  S+ +   +
Sbjct: 449 IFFMPGVIGLLFHEFAVVVGLAIIVSAFVSLTLVPML 485



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 66/159 (41%), Gaps = 6/159 (3%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + + + + + + ++ +   +  I  L       L    LFG +  L A   ++ L+G
Sbjct: 858  IIAALLVIYVLLGVLYESYIHPITIIAGLPSAAVGALVTLMLFGQDLTLIATIGIVMLVG 917

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ D      +     ++    I ++        + T+MAA +  LP+A+   
Sbjct: 918  IVKKNAIMMIDFALDAQRH--QGMAAAQAIREACILRFRPIMMTTMAALMGALPIALGLG 975

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             G  +     + +  G+V + + ++FI   I L +  + 
Sbjct: 976  AGAELRQPLGLAVVGGLVFSQAITLFITPVIYLALDRFS 1014


>gi|304396374|ref|ZP_07378255.1| acriflavin resistance protein [Pantoea sp. aB]
 gi|304355883|gb|EFM20249.1| acriflavin resistance protein [Pantoea sp. aB]
          Length = 1033

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 68/529 (12%), Positives = 147/529 (27%), Gaps = 33/529 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P       +             L     + +   +    +     +     
Sbjct: 29  YRLLPVAPLPQVDFPTIM---------VSASLAGASPETMAATVATPLERSLGQIAGISE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S  Q  + + L F   R     A  V   +    S L                 + +
Sbjct: 80  MTSSSSQGSSTVILQFDLDRDINGAARDVQAAINAARSLLPSAMASLPTYRKANPSDAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    +        E       +    +G  +   +       L  +  +  P +L    
Sbjct: 140 VM-LALTSATRSPGELYDLAESKIEQVMGQVQGVGEVSLMGSALPAVRIDLQPLKLTHYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +         +    +           +   +E                      
Sbjct: 199 ISLETVRAAVANSTTNLPKGILQSSDQSWLVDSNGQLEKAA------------------- 239

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
               D+       +         +   +        L A          +A  +   TI+
Sbjct: 240 -SYRDLIITWQQGKAVRLRDVATVYDSVEDRYQAGFLNATPAVMIGIKRQAGANMLETID 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                  +L           V          S    + T  I   LV+ V+F+ +   + 
Sbjct: 299 AIKAQLPLLEKSLPADSQLKVVVDRSPGVRASLYDTEETLLIAVLLVIAVVFIFLRNLQA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            ++   ++ +++I T A++ LLG +L   S+  +++  G  VD  I+V E I     +  
Sbjct: 359 VIIPALALPVSLIGTCAVMYLLGYSLDNLSLMALIVSTGFVVDDAIVVLENITRHIERGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           S   +   G      T+    ++ +   + +   G   G   R FA+T+ +S+LIS+F +
Sbjct: 419 SPLRAALRGAQEVSFTVLSMTVSLIAVFIPILLMGSIVGRLFREFAVTLTVSLLISLFVS 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
           +S+   +   +++ K   S   +PL +F        +         V  
Sbjct: 479 LSLTPMLCARLLKPKPPVSQRPHPLYQFIENQLNRLLAAYGRGLAWVMR 527



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 68/204 (33%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           +   +      +   S ++      P +   L       +I   +
Sbjct: 285 IKRQAGANMLETIDAIKAQLPLLEKSLPADSQLKVVVDRSPGVRASLYDTEETLLIAVLL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + +           +     L + +  T     L G   +  ++ A++   G+ V+D +
Sbjct: 345 VIAVVFIFLRNLQAVIIPALALPVSLIGTCAVMYLLGYSLDNLSLMALIVSTGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIG 795
           VV + +    +     +S      +   E     +  +++     +P+ + G   G +  
Sbjct: 405 VVLENI---TRHIERGLSPLRAALRGAQEVSFTVLSMTVSLIAVFIPILLMGSIVGRLFR 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ +   ++++   S+ +   +
Sbjct: 462 EFAVTLTVSLLISLFVSLSLTPML 485



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
                  +S +  I ++        + T++AAF   LP+A+  G    +     I +A G+
Sbjct: 937  AERRLGMSPQQAITQACLMRFRPIMMTTLAAFFGALPLALGSGGDADLRSPLGIAIAGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
             ++   ++F    + L++        R
Sbjct: 997  ALSQLLTLFTTPVVYLWLDRLGRATQR 1023


>gi|308189140|ref|YP_003933271.1| RND efflux system, transporter protein [Pantoea vagans C9-1]
 gi|308059650|gb|ADO11822.1| Putative RND efflux system, transporter protein [Pantoea vagans
           C9-1]
          Length = 1033

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/529 (13%), Positives = 147/529 (27%), Gaps = 33/529 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P       +             L     + +   +    +     +     
Sbjct: 29  YRLLPVAPLPQVDFPTIM---------VSASLAGASPETMAATVATPLERSLGQIAGISE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S  Q  + I L F   R     A  V   +    S L                 + +
Sbjct: 80  MTSSSSQGSSSIILQFELDRDINGAARDVQAAINASRSLLPSAMASLPTYRKANPSDAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    +        E       +    +G  +   +       L  +  +  P +L    
Sbjct: 140 VM-LALTSATRTPGELYDLAESKIEQAMGQVQGVGEVSLMGSALPAVRIDLQPLKLTHYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +         +    +           +   +E                      
Sbjct: 199 ISLETVRAAVANSTTNLPKGILQGSDQSWLVDSNGQLEKAA------------------- 239

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
               D+       +         +   +        L A          +A  +   TI+
Sbjct: 240 -SYRDLIITYQQGKAVRLRDVATVYDSVEDRYQAGFLNATPAVMIGIKRQAGANMLETID 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                  +L           V          S    + T  I   LV+ V+F+ +   + 
Sbjct: 299 AIKAQLPLLEKSLPADSQLKVVVDRSPGVRASLYDTEETLLIAVLLVIAVVFIFLRNLQA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            ++   ++ +++I T A++ LLG +L   S+  +++  G  VD  I+V E I     +  
Sbjct: 359 VIIPALALPVSLIGTCAVMYLLGYSLDNLSLMALIISTGFVVDDAIVVLENITRHIERGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           S   +   G      T+    ++ +   + +   G   G   R FA+T+ +S+LIS+F +
Sbjct: 419 SPLRAALRGAQEVSFTVLSMTVSLIAVFIPILLMGSIVGRLFREFAVTLTVSLLISLFVS 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
           +S+   +   +++ K   S   +PL +F        +         V  
Sbjct: 479 LSLTPMLCARLLKPKPPVSQRPHPLYQFIENQLNRLLAAYGRGLAWVMR 527



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 23/204 (11%), Positives = 68/204 (33%), Gaps = 6/204 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q           +   +      +   S ++      P +   L       +I   +
Sbjct: 285 IKRQAGANMLETIDAIKAQLPLLEKSLPADSQLKVVVDRSPGVRASLYDTEETLLIAVLL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + +           +     L + +  T     L G   +  ++ A++   G+ V+D +
Sbjct: 345 VIAVVFIFLRNLQAVIIPALALPVSLIGTCAVMYLLGYSLDNLSLMALIISTGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIG 795
           VV + +    +     +S      +   E     +  +++     +P+ + G   G +  
Sbjct: 405 VVLENI---TRHIERGLSPLRAALRGAQEVSFTVLSMTVSLIAVFIPILLMGSIVGRLFR 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            FA+ +   ++++   S+ +   +
Sbjct: 462 EFAVTLTVSLLISLFVSLSLTPML 485



 Score = 42.0 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
                  +S +  I ++        + T++AAF   LP+A+  G    +     I +A G+
Sbjct: 937  AERRQGMSPQQAITQACLMRFRPIMMTTLAAFFGALPLALGSGGDADLRSPLGIAIAGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
             ++   ++F    + L++        R
Sbjct: 997  ALSQLLTLFTTPVVYLWLDRLGRATQR 1023


>gi|304436594|ref|ZP_07396563.1| protein-export membrane protein SecD [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304370290|gb|EFM23946.1| protein-export membrane protein SecD [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 409

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 146/388 (37%), Positives = 229/388 (59%), Gaps = 27/388 (6%)

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  L       + +        QV   A+ + + I+ +R++ +G++E  IQR G  R++I
Sbjct: 23  RQGLDLQGGTHVVLEAVDTEQAQVNDDAMNRVVAIMEKRVNALGLTEPIIQREGERRVII 82

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPG +DP    + +G TA + F                             E    ++G
Sbjct: 83  ELPGVKDPDAAIKTIGKTAMLEFR--------------------------DEEGNTVLTG 116

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             L  A A+ +P+T + VV++ F + GA++F ++T  N+G+ +A++LDG VLTAP + + 
Sbjct: 117 TDLKDAQASTNPQTGQNVVNLEFSDEGAQKFADLTMKNVGRTIAILLDGEVLTAPNVREP 176

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           I  G+A+I+G  T+E A  LA +LR+G+LP+K+ I+E R VG  LG DS  K   A   G
Sbjct: 177 ILGGRAEITGQKTLEEAQNLAVVLRSGALPVKVEIIETRTVGPTLGQDSKDKSQFAFAVG 236

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           L  +V FM+  Y   G +AD ++    I+ L +L L+ ATLTLP +AGI+L IG+AVD+N
Sbjct: 237 LGAVVFFMVFFYHFSGFIADVALMAYTIMLLGILYLMDATLTLPGVAGIILSIGMAVDAN 296

Query: 432 ILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
           +L+ E  +EE +   +S+  ++D GF RA++TIFDSN+T LIA  VLFF G G +RGFAI
Sbjct: 297 VLIFEHFKEEYQINGKSLRLAMDAGFKRAFTTIFDSNVTTLIAAGVLFFLGTGTIRGFAI 356

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYK 518
           T+G+  ++SMFTAI++ + M+  +I  K
Sbjct: 357 TLGVGTILSMFTAITLTQFMLKLMINSK 384



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 69/172 (40%), Gaps = 3/172 (1%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++   K      +   A++ ++   + +     A   L+      LG   L  
Sbjct: 216 TVGPTLGQDSKDKSQFAFAVGLGAVVFFMVFFYHFS-GFIADVALMAYTIMLLGILYLMD 274

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  VA ++  IG +V+  V++++  ++  ++     S R  +D            +
Sbjct: 275 ATLTLPGVAGIILSIGMAVDANVLIFEHFKEEYQI--NGKSLRLAMDAGFKRAFTTIFDS 332

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++   I+   +   G   I  FAI +  G +++  ++I +   +L  + + +
Sbjct: 333 NVTTLIAAGVLFFLGTGTIRGFAITLGVGTILSMFTAITLTQFMLKLMINSK 384



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 69/222 (31%), Gaps = 15/222 (6%)

Query: 42  NRISLGLDLRGGSHLVLE-VDED--DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-K 97
           + I  GLDL+GG+H+VLE VD +     +  +      +   +   G+    +++    +
Sbjct: 20  SSIRQGLDLQGGTHVVLEAVDTEQAQVNDDAMNRVVAIMEKRVNALGLTEPIIQREGERR 79

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLN----------VDPKKNLLVTTTEKEISIVL 147
           + +     +  +     +                       D + +    T +  +++  
Sbjct: 80  VIIELPGVKDPDAAIKTIGKTAMLEFRDEEGNTVLTGTDLKDAQASTNPQTGQNVVNLEF 139

Query: 148 SQNNIDQVISHAIEQSMEIIRQRID-QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           S     +     ++     I   +D ++  + +  + +   R  I      + ++   ++
Sbjct: 140 SDEGAQKFADLTMKNVGRTIAILLDGEVLTAPNVREPILGGRAEITGQKTLEEAQNLAVV 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
             +  +     +      G   G      S     +    V 
Sbjct: 200 LRSGALPVKVEIIETRTVGPTLGQDSKDKSQFAFAVGLGAVV 241


>gi|70730978|ref|YP_260719.1| multidrug efflux RND transporter [Pseudomonas fluorescens Pf-5]
 gi|68345277|gb|AAY92883.1| multidrug efflux RND transporter [Pseudomonas fluorescens Pf-5]
          Length = 1025

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 69/607 (11%), Positives = 174/607 (28%), Gaps = 53/607 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFP----SAMPKNRISLGLDLRGGSHLV 57
           +   W V++   I  +GL         +  ++++P    + +  +    G D        
Sbjct: 9   KRPVWAVVVSLFILILGLRSIF-----ELPVNQWPRTENTVVTISTYYYGAD-------- 55

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   V GF+    +   +  +       +     + IT +   +        ++  
Sbjct: 56  -----AATVAGFITQPLEAAIAQAQGIDYLSSTSITGLSTITATLRLNYDSSKALTEINT 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V ++L    ++ +L     +    +      D +       +  ++R    ++   
Sbjct: 111 QVNSVKNQLPAQSQEPVLTVAVGQTTDAMYLGFYSDTL--ATNNITDYLVRVVKPKLDSL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              L    DP +L     T   ++               G      + 
Sbjct: 169 EGVQTAEILGGRQFALRAWLDPDKLAAHNVTAQDVATAL------------GNNNYLSAV 216

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G+       V+++          F          +     G    +     N+       
Sbjct: 217 GSTKGQMITVDLTAGTDLHTVDEFK--------RLVVKHNGDALVYLEDLGNVTLGAENY 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                 +               +     +        L++         +   +      
Sbjct: 269 DSSVAFSGKRSVFIGIKAAPTANILNVADNVRKAFPELQSQLPAGVRGEIVYDSTAFINT 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V +V+++ +   +  +V   +I L+++ T  ++ LLG ++ L ++
Sbjct: 329 SIFEVVKTLVEAMIIVSVVIYLFLGSFRAVIVPLVAIPLSLVGTFFVMYLLGYSINLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E +      + + V  +  +        I    +  + A V 
Sbjct: 389 LALVLAIGLVVDDAIIVVENVDRHIKEQGRGVLEAALLAARELGGPIIAMTVVLIAAYVP 448

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPL 528
           +       G   + F  ++  ++ +S   A+++   M   + +      +  K +D    
Sbjct: 449 IGLRSGLTGALFKEFCFSLAGAVTVSAVIALTLSPMMTSRLFKSGQEEGRFAKRLDRYFD 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +A              +LF + +   L         + +G + + +     
Sbjct: 509 WLRGRYHRVLAAGLDSWPVLVTFGFLLFVLVAASGLTAKSELSPTEDQGLVFMQIKGAPT 568

Query: 589 VDLSVVR 595
                + 
Sbjct: 569 ASPQQME 575



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/207 (12%), Positives = 81/207 (39%), Gaps = 8/207 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               +    ++ ++   V    + ++         E+++  +  +II ++ + +++    
Sbjct: 297 DNVRKAFPELQSQLPAGVRGEIVYDSTAFINTSIFEVVKTLVEAMIIVSVVIYLFLG--- 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   +  +  + L +  T     L G   NL  + A++  IG  V+D ++V + +  + 
Sbjct: 354 SFRAVIVPLVAIPLSLVGTFFVMYLLGYSINLLTLLALVLAIGLVVDDAIIVVENV--DR 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +        +    +  E  G  +  ++    + +P+ +     G++   F   +A  +
Sbjct: 412 HIKEQGRGVLEAALLAARELGGPIIAMTVVLIAAYVPIGLRSGLTGALFKEFCFSLAGAV 471

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
            V+A  ++ ++  +   ++    +  R
Sbjct: 472 TVSAVIALTLSPMMTSRLFKSGQEEGR 498



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 86/235 (36%), Gaps = 9/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + + +  +  I         N   +L       V+     E++ +    +  ++    + 
Sbjct: 771  AMIAARTVAHIETSTEPESVNHFQQLNSATLSGVSGVSQGELLARLKGILEQVAPSGYSS 830

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW---YFALGAITTLILDITKTLGFFA 712
                +  + +   G    ++    +++Y+ + F++      +  + ++   +   L F  
Sbjct: 831  DYAGESRQFIQESGGFVGLLLFSILIVYLALAFQFESYRDPVVILFSVPPALFGALAFIT 890

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            +     N+     ++TL+G      +++        +L     + R+ I+++    L   
Sbjct: 891  MGFASINVYTQVGLVTLLGLITKHGILIVQFAN---QLQRAGHNKREAIEEAAAVRLRPI 947

Query: 773  VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            + T+ A  + V+P+      G +      + +  G+ +    ++F+   + LFI 
Sbjct: 948  LMTTAAMVLGVVPLVWASGAGAAGRHDMGLVIFAGLSIGTLLTLFMVPAMYLFIG 1002


>gi|312796745|ref|YP_004029667.1| Acriflavin resistance plasma membrane protein [Burkholderia
           rhizoxinica HKI 454]
 gi|312168520|emb|CBW75523.1| Acriflavin resistance plasma membrane protein [Burkholderia
           rhizoxinica HKI 454]
          Length = 1106

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 65/515 (12%), Positives = 142/515 (27%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GL         +  +   P         L           L    
Sbjct: 10  RPVATTLLTVGIALAGLFA-----FVKLPVSPLPQVDFPTISVLA---------TLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        +      +I L F  +R  +  A  V   +   
Sbjct: 56  PETVATSVASPLERHLGAIADVTEMTSTSGIGNTRIVLQFGLNRDIDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    ++N          + +L    +      A +            +   +   +
Sbjct: 116 RADLPASLRQNPTYHKVNPADAPILV-LALTSKTMTAGQMYDAASTVLQQALSQIDGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  E +P+ L         +       N +                    
Sbjct: 175 VNVSGAANPAVRVEINPTVLFHYGIGLEDIRAALASANANSP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +G        N   +      D+                 +   +  +    +
Sbjct: 217 --KGAIEAGRRHLQLYTNDQARRADQYRDLVIAYRNGSAVRLSDVAQVVDSVEDLRTMGI 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        I   +   +   T+         LRA                    S    
Sbjct: 275 MNGERAVLVILYRQPGANIIETVNRVKARLPQLRAALPAAIDVTPTADRTMTIRASLRDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV+IV+F+ +   +  L+   ++ +++I T A + LLG ++   S+  + +
Sbjct: 335 ERTLLIAVILVVIVVFLFLRNWRATLIPSVAVPVSIIGTFAGMYLLGYSIDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +  +G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENISRHIEAGMPRMRAAIVGAREVGFTVLSISVSLVAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA+T+ L+I +S+  ++++   +   +
Sbjct: 455 IVGRLFREFAVTLSLAIFVSLLVSLTLTPMLCARL 489



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + I  T     L G   +  ++ A+    G+ V+D +VV + +    +
Sbjct: 356 WRATLIPSVAVPVSIIGTFAGMYLLGYSIDNLSLMALTIATGFVVDDAIVVLENI---SR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +           E     +  S++     LP+ + GG V      FA+ ++  I 
Sbjct: 413 HIEAGMPRMRAAIVGAREVGFTVLSISVSLVAVFLPILLMGGIVGRLFREFAVTLSLAIF 472

Query: 807 VAASSSIFIAAPI 819
           V+   S+ +   +
Sbjct: 473 VSLLVSLTLTPML 485



 Score = 38.9 bits (88), Expect = 4.0,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 93/236 (39%), Gaps = 7/236 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +     G+         +     + +      + +     + + + +I    T+  + 
Sbjct: 852  SAIARFAPGNTPLAVSHQNQFVATTISFNLPVGTSLSDATAAIYQTMADIGMPGTLHGSF 911

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                   ++ +    + ++ +  A+ I + I ++ +   L  ++TL       L    LF
Sbjct: 912  SGTAHAFQQALSNQPLLILAALAAVYIVLGILYESYIHPLTILSTLPSAGVGALLALLLF 971

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             IEF++ A+  V+ LIG    + +++ D     +    T +S R+ I ++        + 
Sbjct: 972  RIEFSIIALIGVILLIGIVKKNAIMMVDVA---IDAARTGMSSREAIRQACLLRFRPIMM 1028

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            T+ AA +  LP+A     G  +     I +  G++V+   +++    + L++   R
Sbjct: 1029 TTCAALLGALPLAFGHGEGHEMRAPLGISIVGGLIVSQLLTLYTTPVVYLYMDRLR 1084


>gi|149920452|ref|ZP_01908921.1| acriflavin resistance protein [Plesiocystis pacifica SIR-1]
 gi|149818767|gb|EDM78210.1| acriflavin resistance protein [Plesiocystis pacifica SIR-1]
          Length = 1271

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 74/555 (13%), Positives = 168/555 (30%), Gaps = 38/555 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++++  +   G   A         ++  P                      E   
Sbjct: 59  RPVAVLMVFFAVIVFGAFSA-----TSLPVNLMPDISYPKLT---------VRTEYEGAA 104

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E+   +          R     + L F       +    V   L  +
Sbjct: 105 PAEVENDVARPLEEVLGVVTGVTRISSVSRAGYADVILEFTWDMDMGDANQDVLEKLDVI 164

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH----AIEQSMEIIRQRIDQIGISE 178
            S L  + K  L++        +++   + +                  R+    +   +
Sbjct: 165 KSALPEESKAPLILRYDPTLDPVLVLSLSGEGEAYEGVAGLKALRRVADREVRRLLEPVD 224

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                     +  ++  E D   LR+   ++  +       N +  G        R    
Sbjct: 225 GVASVKVRGGLEEEIHVELDEDALRRTGISSNDVISRLSAENINLAGGSMREGRTRYLIR 284

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                 D  +I                 + +V  S +          T ++  K   V+ 
Sbjct: 285 TVNEFRDLDDI-----------------RDLVVASRNGRDVLLRHIATIEHGFKDREVIT 327

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                 A +I     +    +     +          +          +          S
Sbjct: 328 RIDGSEAVMIEVYKEADANIVEMAKQVRERIDGQVAPKLAKEYDTSLGLVSDRSLFIQSS 387

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +  + T  +     ++VLF+ +  G+  ++   SI +++++T A L L G +L + S+ 
Sbjct: 388 IAEVRNTAIVGGLFAILVLFLFLREGRSTVIVAASIPVSILVTFAPLKLAGVSLNIMSLG 447

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+ LGIG+ VD++I+V E I     +   +  +   G S   S +  S +T++     + 
Sbjct: 448 GMALGIGMLVDNSIVVLESIHRCREEGDPLVRATLRGVSEVGSAVVASTLTSIAVFFPMI 507

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F     G       +T+  S+L S+  A+ ++  +    +   +  S+      R+    
Sbjct: 508 FVEGVAGQMFGDLGLTVVFSLLASLAVALFLIPMLASRQLPGGESPSLGERLRGRWLRWT 567

Query: 536 DCIAIQFMRARFWGV 550
             I ++ + A +   
Sbjct: 568 AVIEVRELFAEWAWW 582



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 88/277 (31%), Gaps = 10/277 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                       +N   D      L V +    D+ +           D           
Sbjct: 274 MREGRTRYLIRTVNEFRDLDDIRDLVVASRNGRDVLLRHIATIEHGFKDREVITRIDGSE 333

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---- 672
            ++   Y+  D+       ++ ++   ++ P    +    +G    R L  +  +     
Sbjct: 334 AVMIEVYKEADANIVEMAKQVRERIDGQVAPKLAKEYDTSLGLVSDRSLFIQSSIAEVRN 393

Query: 673 --VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             ++    A+L+      +    +    ++ + I  T     L G+  N+ ++  +   I
Sbjct: 394 TAIVGGLFAILVLFLFLREGRSTVIVAASIPVSILVTFAPLKLAGVSLNIMSLGGMALGI 453

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V++ +VV + +    +             + ++E     V +++ +     PM    
Sbjct: 454 GMLVDNSIVVLESIH---RCREEGDPLVRATLRGVSEVGSAVVASTLTSIAVFFPMIFVE 510

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G     F   +   +V +  +S+ +A  ++  +   +
Sbjct: 511 GVAGQMFG-DLGLTVVFSLLASLAVALFLIPMLASRQ 546



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 75/215 (34%), Gaps = 7/215 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V L     + V        +   I  +   + ++       +      R   + + 
Sbjct: 990  GQQRVGLVTANVEGVGLGTAATEISAAIDGLELPAGVKTAVTGQSEEWETSSRSLYLALA 1049

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +S   + + +  +F+   + L  + ++ L     +       +  ++ A    + L G  
Sbjct: 1050 LSVFLVYVIMASQFESLIYPLIILVSIPLAFVGVVVVLLALDMPISVIAFLGAIMLAGIV 1109

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +V+ D +    +L     +  + ++ +    L   + T++   + ++PMA     G
Sbjct: 1110 VNNAIVLVDYVN---QLKARGHATAEALEMAGTIRLRPILMTTLTTVLGLIPMAAGMGDG 1166

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              +    AI +  G+  +   ++ +   +   +  
Sbjct: 1167 AEIRQPMAITVIAGLSFSTLLTLIVIPTLYQLVDR 1201


>gi|254499095|ref|ZP_05111786.1| acriflavin resistance protein [Legionella drancourtii LLAP12]
 gi|254351681|gb|EET10525.1| acriflavin resistance protein [Legionella drancourtii LLAP12]
          Length = 1030

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 76/603 (12%), Positives = 175/603 (29%), Gaps = 40/603 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   +   G+L           +   P       I++   L GGS       
Sbjct: 4   RKPIATILLALGLSFAGILA-----FNLLPVAPLPQIDFPT-ITVQASLPGGS------- 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S    Q+ IT+ F  SR  +  A  V   +  
Sbjct: 51  -PEVMATSVATPLERQLGRIAGITQITSSSTLGQSSITIQFDLSRDIDGAARDVQAAINA 109

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +   N          + ++    +        +           +I   E   
Sbjct: 110 ALSQLPTNLTNNPTYRKVNPADAPIMI-IGLTSDKYTPGKMYDVASTILQQKILRIEGVG 168

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +  E +P+ L +      +++                         N  
Sbjct: 169 QVNVGGGSLPAVRVEINPTTLNKYGIGLNQLATTIAA-------------------ANVN 209

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             + +V  +   L+   +N           +                N+   +A V +  
Sbjct: 210 QAKGQVVNNDGTLSTIKSNDQMLKAAHYAPLIISYNNNNPVRLSDIANVIDSVADVHNAG 269

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         +   +   +   T++    +   L A         +          S   
Sbjct: 270 LANGKPAVLLVLFKQPGANVIKTVDYVKKILPQLEASIPSEINLNILMDRTTTIRTSLHD 329

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+ V ++ +   +  L+   ++ L+++ T A++ LL  +L   S+  + 
Sbjct: 330 VELTLLIAMFLVIFVTYLFLGSVRAMLIPGIAVPLSLLGTFAVMKLLNYSLDNLSLMALT 389

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  ++V E I       +    +   G      T+   +I+ +   + +    
Sbjct: 390 ISTGFVVDDAVVVLENISRHIALGKKPLQAAYDGSKEIGFTVLSMSISLIAVFIPILLMT 449

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---KMKSIDINPLSRFFLIP 535
              G   R F +T+ ++ILIS+  ++++   M   ++R     +                
Sbjct: 450 GIVGRLFREFVVTLSVAILISLVISLTLTPMMCSRLLRGNEGEQTNHFMNFMERVKLRYS 509

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    +      V       +     +      +       I   + A++ +    ++
Sbjct: 510 KGLRWALVHPTMMLVLTVGAIFLTIYLFVAIPKGFFPQQKTDRIAGSLRADQNISFQAMK 569

Query: 596 SNL 598
             L
Sbjct: 570 EKL 572



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 81/241 (33%), Gaps = 7/241 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +    N PV LS + + ++S+     +          LV  +    + +     ++ +  
Sbjct: 242 ISYNNNNPVRLSDIANVIDSVADVHNAGLANGKPAVLLVLFKQPGANVIKTVDYVKKILP 301

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITT 699
           ++   +P     N  +      R  +    + ++I+  + + +           L     
Sbjct: 302 QLEASIPSEINLNILMDRTTTIRTSLHDVELTLLIAMFLVIFVTYLFLGSVRAMLIPGIA 361

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + L +  T     L     +  ++ A+    G+ V+D VVV + +    +          
Sbjct: 362 VPLSLLGTFAVMKLLNYSLDNLSLMALTISTGFVVDDAVVVLENI---SRHIALGKKPLQ 418

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
                  E     +  S++     +P+ +  G V      F + ++  I+++   S+ + 
Sbjct: 419 AAYDGSKEIGFTVLSMSISLIAVFIPILLMTGIVGRLFREFVVTLSVAILISLVISLTLT 478

Query: 817 A 817
            
Sbjct: 479 P 479



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 92/286 (32%), Gaps = 6/286 (2%)

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
                +  +          +         +   +         V  S   S + G      
Sbjct: 731  SQISVMYMPMNQYFVVMNVAQKYWQYPKVLDEIYVLSAAGNEVPLSAFASFKPGSTLLSV 790

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                +       +      +   V+  +   I+ +    T++       +  +E      
Sbjct: 791  NHQSQTPAATFSFNLAPGTSLGGVVNTITDMISNMGLPPTMRGAFQGTAQAFQESFANEK 850

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              ++ + +A+ I + + ++     L  ++TL       L    L   + ++ A   ++ L
Sbjct: 851  YLIMAALLAVYIVLGMLYESLIHPLTILSTLPSAGVGALLALILCRTDLSIIAFIGIILL 910

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG    + +++ D      +      S R+ I ++        + T+MAA +  LP+ + 
Sbjct: 911  IGIVKKNAIMMIDFALDAERQENK--SPREAIYEAALLRFRPIMMTTMAALLGALPLVIG 968

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +     I +  G++++   +++    I L +     +  R
Sbjct: 969  FGVGSELRRPLGIAIVGGLILSQLLTLYTTPVIYLALDTASIRLRR 1014


>gi|325924267|ref|ZP_08185817.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
 gi|325545259|gb|EGD16563.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
          Length = 1046

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/540 (12%), Positives = 143/540 (26%), Gaps = 38/540 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPLIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + L F  +R  ++ A  V   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSLVVLVFQSNRNIDSAAQDVQTAINS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      D     A E           ++       
Sbjct: 115 SQSDLPSGLGTPIYSKANPNDDPVIAIALTSD--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +     
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIVAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVAKAAD-------------------FAQLAISTQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LRA   P                S   
Sbjct: 274 WFDGKPAVVMYAFTRAGANIVETVDQVKAQIPGLRAYLQPGTKLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQATLMISLVMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYMLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E I     +  S   +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDDAIVVIENIMRHLDEGMSRLDAALAGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + + +
Sbjct: 454 GMVGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSAHTEPEKPSRFGAWLDRMHERM 513



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 62/151 (41%), Gaps = 7/151 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS + +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 338 LMISLVMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYMLGFTLNNLSLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
           + V+D +VV + +   M+     +S  D       E     V  + +     +PM     
Sbjct: 398 FVVDDAIVVIENI---MRHLDEGMSRLDAALAGAREIGFTIVSITASLVAVFIPMLFASG 454

Query: 791 --GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             G+    F + +   IVV+   S+ +   +
Sbjct: 455 MVGAFFREFTVTLVAAIVVSMLVSLTLTPAL 485


>gi|257470443|ref|ZP_05634534.1| acriflavin resistance protein B [Fusobacterium ulcerans ATCC 49185]
 gi|317064651|ref|ZP_07929136.1| RND superfamily resistance-nodulation-cell division antiporter
           [Fusobacterium ulcerans ATCC 49185]
 gi|313690327|gb|EFS27162.1| RND superfamily resistance-nodulation-cell division antiporter
           [Fusobacterium ulcerans ATCC 49185]
          Length = 1026

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/618 (11%), Positives = 170/618 (27%), Gaps = 44/618 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  IGL+               P                      +  
Sbjct: 9   RRPVATTMLMVSVMFIGLMAMFSMKSELLPNMNIPVVT--------------VRTTWQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E+   ++       +    Q+ I++ F      ++   ++   L  
Sbjct: 55  VAEDVETQVTKKIEEILPNVEGIDKIESTSTYGQSTISVKFDYGIDADDKVTEIQRELSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    +         ++ L             E S  +      +        
Sbjct: 115 ITNDLPSDADTPVAKKVEVGSGNLTLVIMLSAPNK---TELSSFVEEYLKPKFESLPGIG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         Q+  + D  +L     +  ++     + + +                   
Sbjct: 172 EVNVYGNPDKQVQIQIDSDKLAAYDLSPTELYEMIRVSSLNLPLGTISTGSKDVIVR--- 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                   +    +                 N+        D  
Sbjct: 229 ------------------FMGELNYIDTFEDMILNSNGNTLRLKDVANVVLTTEDPEDIS 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L+       +    +  S       A     +L+    P     +          S S 
Sbjct: 271 YLSGKESIAVVVEKSSDGSTIDLNNKALDALEVLKPIMPPNTEYSILLDTSEDINKSISN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             GT      L  IVL++ +   +  L+   ++ + VI T A L+L G +L L S+ G+ 
Sbjct: 331 VSGTAVQGLILATIVLYLFLKNIRATLLVSAALPVAVIFTFAFLALNGTSLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +G+G+  D++++V + I     +    V  + D G +    ++  S +T ++  + + F 
Sbjct: 391 IGVGMLTDNSVVVVDNIYRHMTELKAPVMEAADNGTTEVTMSVIASALTTMVVFIPILFI 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLIP 535
            G      R  A ++  S L ++  +++++  +    +  K    K        +   + 
Sbjct: 451 PGIAREINRDLAYSIIFSNLAAIIVSLTLIPMLASRFLTNKTDITKEGKFFGAVKSNYLK 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                   R +  G  + I                     +G   +     + +D+    
Sbjct: 511 IINWAVKNRWKTVGTTLVIFMFTIMTTPKLLKMEFMPKQDQGRYSIVAELGKGLDIEKSG 570

Query: 596 SNLESLQIGDISFQNFDG 613
           +  + ++    +  N   
Sbjct: 571 AMAKEIEEIIKNEPNTQS 588



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 77/216 (35%), Gaps = 7/216 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                          V    +   + +      P  +I        +   + + +  + +
Sbjct: 786 TDRIYSVTVSANDGGVGINAIQNKLVEAYNSTNPPKSISYRWSGDSESLGDTVSQLGLAL 845

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I+   +   +  +F+ +   +  I ++ L +   L    L     N+  +  V+ L G 
Sbjct: 846 GIAIFLIYALLASQFENFVLPVIIIGSIPLALIGVLWGLILTNQAVNIMVMIGVILLAGV 905

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            VN+ +V+ D ++            ++ + +S    L   + T+M   + +LP+++    
Sbjct: 906 VVNNAIVLIDFIK---MTRERGSERQEAVIESCRTRLRPILMTTMTTVLGMLPLSLGIGE 962

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           G  +    AI + FG+  +   ++ +   +   I D
Sbjct: 963 GAEIYRGMAITVMFGLTFSTLLTLVVIPILYTMIED 998



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 78/240 (32%), Gaps = 3/240 (1%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V    L +    DIS+ +       +V             + L+ ++     + P +  
Sbjct: 255 DVANVVLTTEDPEDISYLSGKESIAVVVEKSSDGSTIDLNNKALDALEVLKPIMPPNTEY 314

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    I++ +       V    +A ++           L     L + +  T  F 
Sbjct: 315 SILLDTSEDINKSISNVSGTAVQGLILATIVLYLFLKNIRATLLVSAALPVAVIFTFAFL 374

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           AL G   NL ++  +   +G   ++ VVV D +     +        +  D    E    
Sbjct: 375 ALNGTSLNLISLMGLSIGVGMLTDNSVVVVDNI--YRHMTELKAPVMEAADNGTTEVTMS 432

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +++   +  +P+    G         +A+ I+ +  ++I ++  ++  +      N 
Sbjct: 433 VIASALTTMVVFIPILFIPGIA-REINRDLAYSIIFSNLAAIIVSLTLIPMLASRFLTNK 491


>gi|296135110|ref|YP_003642352.1| acriflavin resistance protein [Thiomonas intermedia K12]
 gi|295795232|gb|ADG30022.1| acriflavin resistance protein [Thiomonas intermedia K12]
          Length = 1103

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/550 (10%), Positives = 140/550 (25%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G +               P                    +     
Sbjct: 71  RPIATTLLMIAVLVAGFV-----GYKLLPQAALPEVDYPTIQ---------VTTLYPGAS 116

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    ++    +              + ITL F  S        +V   + G 
Sbjct: 117 PDVMASSVTGPLEQQFGQMPGLAQMWSVSSGGASVITLRFDLSLSLSVAEQEVQAAINGA 176

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D  +  +        + V++   +                +   ++        
Sbjct: 177 SNLLPSDLPQPPIYAKVNPADAPVIT-LGLTSATLPLTTLYDLADTRLSQKLSQVSGVGL 235

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +   L  L  T   +                         G    
Sbjct: 236 VTLSGGHKPAIRVTVNGPALAALGLTLDSIRTAIA--------------------GANVN 275

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                           AN   ++ +   D+     G           I           +
Sbjct: 276 SPKGSISGSQQSFSIDANDQLQSPQQYRDMIIAYSGGAPVRLGDVATISTGAENAWQAAL 335

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   L+          V          + +  
Sbjct: 336 VNGKPGIVINVQRQPGANVIAVVDAIHKLLPSLQTQLPAAAQLTVLSDRTVTIRAAIADV 395

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +   +   +   ++ L ++ T   + L G ++   ++  + +
Sbjct: 396 QFELLLAVLLVVLVIFVFLRSVRATFIPATAVPLALVGTFGAMYLFGFSINTLTLMALTI 455

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I       +    +   G  +   TI     + +   + L F G 
Sbjct: 456 ATGFVVDDAIVMIENISRYIEAGERPLTAALKGAGQIGFTIITLTFSLIAVLIPLLFMGD 515

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++I+IS   +++    +   ++R+   +       S         A
Sbjct: 516 VVGRLFREFAITLAVAIVISAIVSLTFTPMLSARLLRHTPEQKQSHLFRSTGAFFDRLSA 575

Query: 540 IQFMRARFWG 549
                 R+  
Sbjct: 576 RYTRALRWVL 585



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 51/147 (34%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                     T + L +  T G   LFG   N   + A+    G+ V+D +V+ + +   
Sbjct: 415 RSVRATFIPATAVPLALVGTFGAMYLFGFSINTLTLMALTIATGFVVDDAIVMIENI--- 471

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +             K   +     +  + +    ++P+   G   G +   FAI +A  
Sbjct: 472 SRYIEAGERPLTAALKGAGQIGFTIITLTFSLIAVLIPLLFMGDVVGRLFREFAITLAVA 531

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           IV++A  S+     +   +     +  
Sbjct: 532 IVISAIVSLTFTPMLSARLLRHTPEQK 558



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 67/179 (37%), Gaps = 8/179 (4%)

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFG 715
                 +  +   +  ++ +   M I + + ++ Y     I + +    I   L   A  G
Sbjct: 906  SASAFQSALSNQLWLLLAAVATMYIVLGVLYESYIHPITILSTLPSAGIGALLALMA-TG 964

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             +  + A+  ++ LIG    + +++ D            +   + + ++ +  L   + T
Sbjct: 965  HDLTVIAIIGIILLIGIVQKNAILMVDFALD--AQRNQGLPPDEAMLQAAHLRLRPILMT 1022

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + AA    +P+A+    G  +     I +  G++V+   ++F    I L       + A
Sbjct: 1023 TFAALFGAVPLALGTGMGSELRQPLGIAIVGGLLVSQVLTLFTTPVIYLAFDRLATRTA 1081


>gi|298346869|ref|YP_003719556.1| protein-export membrane protein SecD [Mobiluncus curtisii ATCC
           43063]
 gi|298236930|gb|ADI68062.1| protein-export membrane protein SecD [Mobiluncus curtisii ATCC
           43063]
          Length = 721

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 115/719 (15%), Positives = 229/719 (31%), Gaps = 98/719 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL--- 58
           +N     +++  +  + L   L      S     P         L +DL GG+ L+L   
Sbjct: 7   KNKALRTLIFFAVIVVALAGTLVGSTIFSNGSYAP--------KLAIDLEGGTQLILTPK 58

Query: 59  --EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADS---------- 105
             E       +  ++   + +R  +   G+    + R  Q  I++    +          
Sbjct: 59  NTEAKAKAISDADIEQAIEVIRQRIDASGVAEAEIARNGQENISVGIPGNPSEETLALIQ 118

Query: 106 ---------------------RFKENIADKVTLFLQGVNSKLNV-----DPKKNLLVTTT 139
                                   + +  ++T                   +    V   
Sbjct: 119 QSAVMRFRTVLLSAPGNATNNEDPQALLGQLTGAAAPAGQGQPAAGETGGQQTQTTVGEG 178

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              ++I  S           +  S +            +              +P ++  
Sbjct: 179 NNTVTIPPSAPTEKGQTQSLVLNSTDPNATPAPTSDPGKPAPTPAAKQHPSAAIPFDELM 238

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKK----------------------GFMFGVRFLRDSD 237
            +  +   T A  S       +                                     +
Sbjct: 239 KQAEKYPDTPAGESKVINDRKHITVRDMFIFNHLDCTDPASLKGGSLDDPKKNLVACSKE 298

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTH-----KPVVDISFDEMGARRFFEV------- 285
           G +  +     +SG  L  A++            +  V +  D  GA++F  V       
Sbjct: 299 GYEKYILGPEVLSGTDLVSASSGMGTNQQGNATGQWEVALKLDADGAKKFDAVAKVLYPN 358

Query: 286 -----TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
                 R+      A+VLD  V++AP +N     G A ISG+ T E++  LA  L+ GSL
Sbjct: 359 QTQGSNRNPDNNRFAIVLDSLVVSAPGVNAPAFGGSASISGSLTRESSATLANQLQFGSL 418

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P+      ++++ A LG + +  G  A + GL+L+VL+++  Y     +A  S+ L   +
Sbjct: 419 PLNFEQQSKQSISATLGGEHLKVGFYAAIVGLILVVLYLLQQYHALAGLATASLLLAGGI 478

Query: 401 TLALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
               +++L  ++    +L  + G+++ +G+ +DS I+  ERIR+E R  + +  +++ G+
Sbjct: 479 VYLAVAILSWSMGYRLSLAGVVGLIVAVGVTMDSFIIYFERIRDEVRDGKPLATAVETGW 538

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           +RA  TI  S+I  ++A VVL+    G V+GFA T+GL+ L+ +         MM  +I+
Sbjct: 539 NRAKRTIVVSDIVNIVAAVVLYVLAVGGVQGFAFTLGLTTLVDLGIIFLFTHPMMSLLIK 598

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
            +               +       +MR+                           +  +
Sbjct: 599 TRYFGEGRKFSGLDPLHLGASSDRIYMRSTATATSS-----RKKKSAQKVASPTISLARQ 653

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               L        D +   +                                   ++  
Sbjct: 654 KAGLLQTDEEDTADTAATPNANLESDTPATESAAETSSTESQSETAKSDESGDTTSKDE 712



 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 70/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD---I 704
               Q+ + +   +  E ++ G    I+  I +++Y+  ++     L A  +L+L    +
Sbjct: 421 NFEQQSKQSISATLGGEHLKVGFYAAIVGLILVVLYLLQQYHALAGL-ATASLLLAGGIV 479

Query: 705 TKTLGFFAL-FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +   +   G   +L  V  ++  +G +++  ++ ++R+R  ++           ++ 
Sbjct: 480 YLAVAILSWSMGYRLSLAGVVGLIVAVGVTMDSFIIYFERIRDEVRD---GKPLATAVET 536

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             N      V + +   ++ + + V     +  FA  +    +V          P++  +
Sbjct: 537 GWNRAKRTIVVSDIVNIVAAVVLYVLAVGGVQGFAFTLGLTTLVDLGIIFLFTHPMMSLL 596

Query: 824 YDWR 827
              R
Sbjct: 597 IKTR 600


>gi|56552423|ref|YP_163262.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761537|ref|ZP_04759624.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|260753902|ref|YP_003226795.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|56543997|gb|AAV90151.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241373845|gb|EER63378.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|258553265|gb|ACV76211.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 1099

 Score =  141 bits (355), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 58/553 (10%), Positives = 153/553 (27%), Gaps = 36/553 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++        +  +   P       +             +    
Sbjct: 10  RPIGTTLLTIGIALAGIIA-----YFKLPVAPLPQIDFPVIV---------VQASMAGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +      +I L F   R     A +V   +   
Sbjct: 56  PDTMANSIAQPLERRLGVIADVTEMTSTSSVGSTQIALEFGLDRDINGAAREVQAAISAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N         +  V+    +        +    +      ++       +
Sbjct: 116 RADLPSTLQSNPSYLKVNPSMMPVMV-LALTSDSKTPGQIYETVSNLVSQRLSQISGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  +  P  L +   +   +       N ++                   
Sbjct: 175 VEIGGGSLPGVRIDVSPYALSRFGLSLEDVRATIESANANRPKGALESPDGHHFQIYTNQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++ G  +                       G          ++   +A   +  +
Sbjct: 235 LGRDAKLYGDLVVAWR------------------DGTTAIRLKDIASVTDGVADTRNLGL 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    + + +   +    +++       L           V      +   + +  
Sbjct: 277 FNGHPAVIVLITQQPGANLINLVDSLRAELPHLEKMLPSDVHVTVANDRTSSIRSTLNEV 336

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV+ V+ + +      ++   +  ++++ T A++   G +L   S+  I++
Sbjct: 337 RLTLIISLVLVIAVVGVFLRNLSAVVIPAVAASVSLLGTFAVMYFAGFSLNNLSMMAIIV 396

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
             G  +D  I+V E I            +  +G      T+   +++ +   + L F   
Sbjct: 397 ATGFVIDDAIVVLENIARHLENGMGRMEAALLGAQEVGFTVLSISLSLVAVFIPLLFLGG 456

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
            GG   R FA+++  ++LISM  +++    M  +++  +K           F      + 
Sbjct: 457 IGGRLFREFAVSLSAAVLISMVISLTTTPMMCAWMLSPRKEDKKQGRIADFFEKSFAHVE 516

Query: 540 IQFMRARFWGVGI 552
             +  A  W + +
Sbjct: 517 KAYSYALNWALSM 529



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/276 (10%), Positives = 89/276 (32%), Gaps = 10/276 (3%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
              +    G D K    L V          ++           +        +  V +  
Sbjct: 228 FQIYTNQLGRDAKLYGDLVVAWRDGTTAIRLKDIASVTDGVADTRNLGLFNGHPAVIVLI 287

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAM 680
                     +++ ++ ++  +  +        V    +  +        + +IIS + +
Sbjct: 288 TQQPGANLINLVDSLRAELPHLEKMLPSDVHVTVANDRTSSIRSTLNEVRLTLIISLVLV 347

Query: 681 LIYIWIRFKWYFAL-GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           +  + +  +   A+        + +  T       G   N  ++ A++   G+ ++D +V
Sbjct: 348 IAVVGVFLRNLSAVVIPAVAASVSLLGTFAVMYFAGFSLNNLSMMAIIVATGFVIDDAIV 407

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
           V + +    +     +   +       E     +  S++     +P+      GG +   
Sbjct: 408 VLENI---ARHLENGMGRMEAALLGAQEVGFTVLSISLSLVAVFIPLLFLGGIGGRLFRE 464

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           FA+ ++  ++++   S+     +  ++   R ++ +
Sbjct: 465 FAVSLSAAVLISMVISLTTTPMMCAWMLSPRKEDKK 500



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 91/267 (34%), Gaps = 16/267 (5%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               G  L   A+  V L  +           I   N +        L+     + AQ+ +
Sbjct: 832  PSTGSALNTSASTMVPLPAIAKFSLHATDLSIQHDNGEAAATISFNLKSGHNLNEAQSEI 891

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
               + + +           T  +G     + +      + I  +  ++Y          +
Sbjct: 892  KAKMAQLMVPANIRGNFAGTAKLGNDSGSQALLLLAALITIYIVLGILY----ENLIHPI 947

Query: 695  GAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
              I+TL    +   L    L  ++F++ A+  V  L+G    + ++V D           
Sbjct: 948  TVISTLPAAGVGAVLALM-LIHMDFSVIALIGVFLLMGIVKKNAILVIDVAL--HLQREQ 1004

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             +S  + + +S        + T++AA + V+P+A+    G        + +  G+VV+  
Sbjct: 1005 GLSAEEAMRQSCILRFRPIIMTTLAAALGVVPLAIGFGEGSEFRQPLGVTIIGGLVVSQM 1064

Query: 811  SSIFIAAPILLFIYDW-----RAKNAR 832
             ++F    I ++           + A+
Sbjct: 1065 LTLFTTPVIYIYFDRLSHWRPWRRKAK 1091


>gi|302561710|ref|ZP_07314052.1| preprotein translocase, SecD subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302479328|gb|EFL42421.1| preprotein translocase, SecD subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 571

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 105/552 (19%), Positives = 202/552 (36%), Gaps = 57/552 (10%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----- 64
           + +++   G + A  +  P+                LG+DL GG+ + L    +      
Sbjct: 1   MIAIVALTGGMFASGHKTPR----------------LGIDLAGGTSITLAAVPEAGQESA 44

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADSRFKENIADKVTLFLQGVN 123
                +      +   +   G+    ++    + I ++       +   ++V    +   
Sbjct: 45  INKTNMATAVSIMERRVNGLGVSEAEVQTQGTRNIIVNIPKGTNSKQAREQVGTTAKLYF 104

Query: 124 S-----KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
                 +L           T              D+    A +++ +             
Sbjct: 105 RPVLTTELAGGGAAPTPSATGNGSEQDSGKDKATDKATDKATDKATDGASPSASATTQGR 164

Query: 179 STIQRLGSHRILIQLPGEQDPSRL----RQLLGTTAKMSFHKVLPNNSKKGFMFGVRF-- 232
           +    L +       P      +         GT+            +       VR   
Sbjct: 165 AVTDALKADETPSASPSGTAGDKATPAPSATGGTSGDADSKLQAQYAALDCTKESVRAKA 224

Query: 233 --------------LRDSDGNQYLVEDKVEISGIHL-NGATANFDPKTHKPVVDISFDEM 277
                                Q  +     + G  +                V + F + 
Sbjct: 225 GEGSKSTDATVACGQNSQGQWQKYILGPAAVDGTEVDKAKAVLNTQSGAGWTVTMDFTDK 284

Query: 278 GARRFFEVTRDNIGKPLAVVL-----DGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
           G+++F ++T                 D  V++ P ++QA+  G A+ISGNFT +++  LA
Sbjct: 285 GSKKFADITGKLAQNQSPQNQFAIVLDNEVVSDPYVSQALTGGNAEISGNFTQQSSQELA 344

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
            ML  G+LP+         V A LG + +  G  A   GL L+VL+++V Y     +A  
Sbjct: 345 NMLSYGALPLTFREDSVTTVTAALGGEQLKAGLIAGAIGLALVVLYLLVYYRGLSFIAIA 404

Query: 393 SIFLNVILTLALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           S+ ++  LT  ++SLLG T+     LP++ G ++ IG+  DS I+  ER+R+E R+ +++
Sbjct: 405 SLLVSAALTYVIMSLLGPTIGFALNLPAVCGAIVAIGITADSFIVFFERVRDEIREGRTL 464

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             S++  + RA  TI  S+  + +A  VLF    G V+GFA T+GL+ ++ +       +
Sbjct: 465 RPSVERAWPRARRTILVSDFVSFLAAAVLFVVTVGKVQGFAFTLGLTTVLDVVVVFLFTK 524

Query: 509 AMMIFIIRYKKM 520
            ++  + R K  
Sbjct: 525 PLLTLMARRKFF 536



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 85/239 (35%), Gaps = 9/239 (3%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             +      KG  +   +  +       ++    +   ++    +  +       +    
Sbjct: 275 WTVTMDFTDKGSKKFADITGKLAQNQSPQNQFAIVLDNEVVSDPYVSQALTGGNAEISGN 334

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            +   ++ L  +      +       +   V   +  E ++ G++   I    +++Y+ +
Sbjct: 335 FTQQSSQELANMLS-YGALPLTFREDSVTTVTAALGGEQLKAGLIAGAIGLALVVLYLLV 393

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            ++   +  AI +L++    T    +L G       NL AV   +  IG + +  +V ++
Sbjct: 394 YYR-GLSFIAIASLLVSAALTYVIMSLLGPTIGFALNLPAVCGAIVAIGITADSFIVFFE 452

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           R+R  ++      + R  ++++        + +   +F++   + V     +  FA  +
Sbjct: 453 RVRDEIRE---GRTLRPSVERAWPRARRTILVSDFVSFLAAAVLFVVTVGKVQGFAFTL 508


>gi|220934902|ref|YP_002513801.1| acriflavin resistance protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996212|gb|ACL72814.1| acriflavin resistance protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1027

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 68/513 (13%), Positives = 157/513 (30%), Gaps = 42/513 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + V++  ++  +GL+      L +  +D  P                          
Sbjct: 10  RPVFTVMVTLIVVTLGLMA-----LSRLPIDLLPDITYPTIT---------VTTSYANAG 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +E+ + +        +  +  + + +SF      +   + V   L+ +
Sbjct: 56  PEEVEQLVTRPIEEVVAAVPGVLEITSTSSEGNSSVRISFDWGANLDEATNDVRDRLERI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L  +  +  +         ++L            +E    I  +   ++        
Sbjct: 116 VNRLPENADRPRVRKFDTAMSPVMLVGIA---GRLDPLEMRQIIDDRIRPRLERVPGVAA 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  ++  E  P RL+ L  +   +       N +          L         
Sbjct: 173 MDIWGGLEREVRVEVFPERLQALGLSLEDIRNAIRDANVNVPAGEIVQGRLDLRVRTPGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            E   E+    +                                   +      +     
Sbjct: 233 FESLEELRATVVAV--------------------RDGAPITLHQVAQVRDTHQRITRIIR 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      +     ++  +              L A    + + +        +   +++ 
Sbjct: 273 INGEPGVRLAVRKQSDANTVEVARAVQQEIRRLNADFPQLSITVPINNARYIERSIENVS 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +      +  +L++LF +     + LVA  +I ++VI T  L+   G TL L ++ G+ L
Sbjct: 333 RSILYGGSLALLVLLFFLRNLR-FTLVAATAIPVSVIATFGLIYFGGFTLNLMTLGGLAL 391

Query: 423 GIGLAVDSNILVNERI-REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           G+GL VD+ I+V E I R       +   +   G     + I  S +T L   + +FF  
Sbjct: 392 GVGLMVDNAIVVIENIARRRTEDGLAPLDAAVHGTGDVSAAIIASTLTTLAIFMPMFFAQ 451

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G   +  A  +  S+  S+  A+++V  +M
Sbjct: 452 DLAGILFKQLAFVVAFSLFCSLLVALTLVPMLM 484



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 80/218 (36%), Gaps = 6/218 (2%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +              V+   +  I ++     +        +  +    +  + +I+
Sbjct: 801  QQRINTVSANIAGRDLGSVVADARASIADLPLPRNVDVIFAGDFEEQQRAFTELSIALIM 860

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +   ++     L  + ++ L +   +G         N+ ++  V+ L+G +V
Sbjct: 861  AIALVYMVMASLYESLRDPLIVMMSVPLALIGVVGLLLATESTINVQSMIGVIMLVGIAV 920

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +++ D  +          +  D + ++    L   + TS+   ++++P+A+    GG
Sbjct: 921  NNAILLVD--QSARLHRDEGWAVMDAVREAGRRRLRPILMTSLTTILALIPLALGVGEGG 978

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                  A  +  G++ +   ++ +   +    +  R +
Sbjct: 979  EAQAPMARAVIGGLLSSTLITLLLIPALYTLFHRDRPR 1016



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 9/140 (6%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            F L A T + + +  T G     G   NL  +  +   +G  V++ +VV + +    + 
Sbjct: 354 RFTLVAATAIPVSVIATFGLIYFGGFTLNLMTLGGLALGVGLMVDNAIVVIENI--ARRR 411

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
               ++  D       +     + +++      +PM       G +    A      +  
Sbjct: 412 TEDGLAPLDAAVHGTGDVSAAIIASTLTTLAIFMPMFFAQDLAGILFKQLAFV----VAF 467

Query: 808 AASSSIFIAAPILLFIYDWR 827
           +   S+ +A  ++  +   R
Sbjct: 468 SLFCSLLVALTLVPMLMGRR 487


>gi|152988148|ref|YP_001349247.1| multidrug ABC transporter [Pseudomonas aeruginosa PA7]
 gi|150963306|gb|ABR85331.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Pseudomonas aeruginosa PA7]
          Length = 1035

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 156/573 (27%), Gaps = 26/573 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            + +L     + +   +    +   S +        S       +TL F   +  +  A 
Sbjct: 51  INALLPGGSPETMASSVATPLEVQFSAIPGITEMTSSSALGTTTLTLQFNLDKSIDVAAQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L VD              S ++    ++  +   IE S         Q
Sbjct: 111 EVQAAINAAAGRLPVDMPNLPTWRKVNPADSPIMI-LRVNSNMMPLIELSDYAETILARQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       Q     +    +  +  P +L     T A +                     
Sbjct: 170 LSQVNGVGQIFVVGQQRPAIRIQAQPEKLAAYQLTLADLRQSLQS--------------- 214

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +          ++   AN          D+          F      I   
Sbjct: 215 -----ASVNLAKGALYGEGRVSTLAANDQLFNASDYDDLVVAYRQGAPVFLKDVARIVSA 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             +   +   +   T +        LR          V      
Sbjct: 270 PEDDYVQAWPNGEPGVALVILRQPGANIVDTADAIQAALPRLREMLPATIEVDVLNDRTR 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +  GLV++V+ + +      L+    + +++  + A + +LG TL 
Sbjct: 330 TIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVATVLAVSLSASFAAMYVLGFTLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  +++ +G  VD  I+V E I        S   +   G +    T+   + + + A
Sbjct: 390 NLTLVALIIAVGFIVDDAIVVVENIHRHLEAGASKVEAALKGAAEIGFTVISISFSLIAA 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   R FA+++ ++ILIS+  ++++   +    +   +         + 
Sbjct: 450 FIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTLAPMLASRFMPALRHAEAPRKGFAE 509

Query: 531 FFLIPDCI--AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +                R   VG +    +     +      + +     +     A   
Sbjct: 510 WLTAGYDRGLRWALGHQRLMLVGFAFTVLVAVAGYVGIPKGFFPLQDTAFVFGTTQAAED 569

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
           +    + +    L              + +   
Sbjct: 570 ISYDDMIAKHRQLAGIIARDPAVQSYNHAVGVT 602



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 95/244 (38%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L  V   + + +   +           LV L+    + V     ++   
Sbjct: 249 VVAYRQGAPVFLKDVARIVSAPEDDYVQAWPNGEPGVALVILRQPGANIVDTADAIQAAL 308

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ E++P +   +      +  R  + +  + ++++   +++ + +  +   A   + T
Sbjct: 309 PRLREMLPATIEVDVLNDRTRTIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVAT 368

Query: 700 -LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L + ++ +     + G   N   + A++  +G+ V+D +VV + +    +      S  
Sbjct: 369 VLAVSLSASFAAMYVLGFTLNNLTLVALIIAVGFIVDDAIVVVENIH---RHLEAGASKV 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S +   + +P+   GG V      FA+ +   I+++  +S+ +
Sbjct: 426 EAALKGAAEIGFTVISISFSLIAAFIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTL 485

Query: 816 AAPI 819
           A  +
Sbjct: 486 APML 489



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 89/237 (37%), Gaps = 6/237 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                    Q         V L +     V+    ++ V++   EI   STI        +
Sbjct: 790  APPRSGPLQINHNGMFPAVNLSFNLAAGVSLGEAVQAVQRAQEEIGMPSTIIGVFQGAAQ 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
              +  +    + ++ + IA+ I + + ++ +   L  ++TL       +     +G +F+
Sbjct: 850  AFQSSLASQPLLILAALIAVYIILGVLYESFVHPLTILSTLPSAGIGAVFLLWAWGQDFS 909

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + A+  ++ LIG    + +++ D            +S    I ++        + T++AA
Sbjct: 910  IMALIGIVLLIGIVKKNGILMVD--FAIAAQREQGLSAERAIYQACLTRFRPIMMTTLAA 967

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             +  +P+ +    G  +     I +  G++V+   ++F    + L +     +   +
Sbjct: 968  LLGAVPLMIGFGTGSELRQPLGIAVVGGLLVSQVLTLFSTPVVYLALDRLFHRREAV 1024


>gi|219670522|ref|YP_002460957.1| acriflavin resistance protein [Desulfitobacterium hafniense DCB-2]
 gi|219540782|gb|ACL22521.1| acriflavin resistance protein [Desulfitobacterium hafniense DCB-2]
          Length = 1043

 Score =  141 bits (355), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 67/621 (10%), Positives = 171/621 (27%), Gaps = 55/621 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++   ++  +G +      L +  +D FP       I                 
Sbjct: 9   KRPVTIIMTVLIVILLGTVS-----LTRLPIDLFPEFELPMAI---------VMTEYSGV 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   S  +   I   +  +  + +  SF           ++   +  
Sbjct: 55  GPQEIEKLITNPIEGAVSSTENIDIVTSTTTEGTSIVMASFKTGTDMNFATLQMREKVDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L       +++      + I+    +   V     +       +   ++   +   
Sbjct: 115 IKFALPEGAGSPMVLKIDISMMPIMQLTMSSANV--DLAQLQALAEDEIKPRMERVKGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++  +    +++    + + +S      N +             +     
Sbjct: 173 SVSISGGYENEVKIKTHQEKMQGYGLSISTLSGILAAENLNSPAGEVKKGNQDLTIRTTG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   EI                     ++        +       ++      V    
Sbjct: 233 EFQTLEEIE--------------------NLLIPLNTGGQVRLKDIADVELGHTDVTTIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++ ++     E        L+A    + L             + + 
Sbjct: 273 RTNGLQSVSIAIQKQSGVNTVAVAEDITKAIGELKAEFPELTL-DTVYDESVYIKETINT 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   L + +LF+     +   +   +I + V+ T A L  +  ++ + ++ G+ 
Sbjct: 332 VFKEALLAGILAIGILFVFFHNLRTTFITATAIPIAVMATFACLYFMDVSINMMTLGGLS 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD NI+  E I        S F +   G S     I  S +T +   + + F  
Sbjct: 392 LAMGRLVDDNIVALENIYRFREAGHSKFDAAIKGVSEVGMAITASTLTTVAVFLPIVFVE 451

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFII---------------RYKKMKSI 523
           G      R  A+T+G+S+  S+  ++++V A+   I+                    +  
Sbjct: 452 GLTATLFRDLALTVGISLGASLLVSLTLVPALSAKIMKVGEIPVGRKGLRGLFDGFGRGF 511

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           D             +       +   VG  ++F +     LF           G + + V
Sbjct: 512 DNGFGRIEKSYRRFLHYALGHRKTIVVGSILIFVLSGATTLFVGAEFMPSSDAGQMTVSV 571

Query: 584 LANRPVDLSVVRSNLESLQIG 604
                  L    + +  ++  
Sbjct: 572 KLPDGAQLEDTDAAIAEVEKH 592



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/243 (9%), Positives = 70/243 (28%), Gaps = 6/243 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +     V L  +              +    +   +   +    ++VA    +    
Sbjct: 244 LIPLNTGGQVRLKDIADVELGHTDVTTISRTNGLQSVSIAIQKQSGVNTVAVAEDITKAI 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++    P  T+         I   +       ++   +A+ I               T 
Sbjct: 304 GELKAEFPELTLDTVYDESVYIKETINTVFKEALLAGILAIGILFVFFHNLRTTFITATA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T        +  N+  +  +   +G  V+D +V  + +    +      S  D
Sbjct: 364 IPIAVMATFACLYFMDVSINMMTLGGLSLAMGRLVDDNIVALENI---YRFREAGHSKFD 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              K ++E       +++      LP+        ++    A+ +   +  +   S+ + 
Sbjct: 421 AAIKGVSEVGMAITASTLTTVAVFLPIVFVEGLTATLFRDLALTVGISLGASLLVSLTLV 480

Query: 817 API 819
             +
Sbjct: 481 PAL 483



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 82/227 (36%), Gaps = 12/227 (5%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 V              V   ++ K+      +          +   +  +   + +
Sbjct: 808  SGQARVVHVSSDIVGRDLVSVTNDIQAKLNNYPLPNGYTYDMGGENEEMVKSFQDLGMAL 867

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDI-TKTLGFFALFGIEFNLTAVAAVLTLIG 731
            I++ + + + +  +F+        I +L +      LG F +     ++ A   ++ L G
Sbjct: 868  ILAIVLVYMILAAQFESLIHPFTIIFSLPMGFSGGMLGLF-ITRSTISVPAFIGLILLTG 926

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
              V++ +V+ D +    K         + I+ +    L   + TS+A  + ++PMAV   
Sbjct: 927  IVVSNAIVLVDYIN---KRREMGDGREEAIENAGPIRLRPIMMTSLATALGLIPMAVGIG 983

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF---IYDWRAKNAR 832
             G   +   AI + FG+ ++  S++ +   I        ++  +  +
Sbjct: 984  EGAETMAPMAIVVIFGMTLSTLSTLILVPVIYTINEDFKNFLKRKGK 1030


>gi|332799136|ref|YP_004460635.1| protein-export membrane protein SecD [Tepidanaerobacter sp. Re1]
 gi|332696871|gb|AEE91328.1| protein-export membrane protein SecD [Tepidanaerobacter sp. Re1]
          Length = 413

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 84/185 (45%), Gaps = 4/185 (2%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
               +    VGP +  + + K +   +I    + +++   ++    L A  +L++ I   
Sbjct: 228 DLEQRQVTTVGPTLGADSLNKSLKAGLIGVALVFLFMLFYYRIP-GLIADFSLLVYIMLV 286

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L  F+  G    L  +A  +  IG +V+  V++++RM++ ++      + R  +D   + 
Sbjct: 287 LIIFSAIGATLTLPGIAGFILSIGMAVDANVLIFERMKEELR---NGKTLRAAVDAGFHR 343

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            L   + +++   I+ + +  +G   I  FA+ +  GI V+  ++I +   IL+ + + R
Sbjct: 344 ALTTIIDSNITTIIAAVVLLYFGTGPIKGFAVTLIIGIAVSMFTAITVTRVILINLVNTR 403

Query: 828 AKNAR 832
               +
Sbjct: 404 LFTNK 408



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 138/383 (36%), Positives = 230/383 (60%), Gaps = 27/383 (7%)

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
            + +       ++V    +  +  +IR RIDQ+G++E  I R G  RIL++LPG +D  R
Sbjct: 54  SVLLEAKPKPGEKVTDEKMTGAENVIRSRIDQLGVTEPVIVRQGDTRILVELPGVEDSQR 113

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
             +++G TA + F                             +++V ++G ++  A A +
Sbjct: 114 ALEIIGKTASLQF--------------------------VGPDNEVILTGDNVKDAKAVY 147

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
             +  +P+V + FD  GA++F + T   + +P+A+VLD ++++AP +   I +G+A I+ 
Sbjct: 148 GQQN-EPMVSLKFDSEGAKKFAKATEKYLKQPIAIVLDEQLISAPTVEDVITNGEAVITN 206

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
             +IE A  LAA++RAG+LP+ L   +   VG  LG+DS+ K   A + G+ L+ LFM+ 
Sbjct: 207 IQSIENAAELAALIRAGALPVDLEQRQVTTVGPTLGADSLNKSLKAGLIGVALVFLFMLF 266

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   GL+ADFS+ + ++L L + S +GATLTLP IAG +L IG+AVD+N+L+ ER++EE
Sbjct: 267 YYRIPGLIADFSLLVYIMLVLIIFSAIGATLTLPGIAGFILSIGMAVDANVLIFERMKEE 326

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  +++  ++D GF RA +TI DSNIT +IA VVL +FG G ++GFA+T+ + I +SMF
Sbjct: 327 LRNGKTLRAAVDAGFHRALTTIIDSNITTIIAAVVLLYFGTGPIKGFAVTLIIGIAVSMF 386

Query: 502 TAISIVRAMMIFIIRYKKMKSID 524
           TAI++ R ++I ++  +   +  
Sbjct: 387 TAITVTRVILINLVNTRLFTNKK 409



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/390 (12%), Positives = 119/390 (30%), Gaps = 28/390 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE---DDFVNGFLQMYSDELRSFLKK 83
           L    +  +     K  I LGLDLRGG  ++LE      +   +  +    + +RS + +
Sbjct: 26  LYGFQIAGYKIIPIKESIKLGLDLRGGVSVLLEAKPKPGEKVTDEKMTGAENVIRSRIDQ 85

Query: 84  EGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
            G+    + +  + +I +        +   + +                          +
Sbjct: 86  LGVTEPVIVRQGDTRILVELPGVEDSQRALEIIGKTASL---------------QFVGPD 130

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
             ++L+ +N+    +   +Q+  ++  + D  G  +          +   +    D   +
Sbjct: 131 NEVILTGDNVKDAKAVYGQQNEPMVSLKFDSEGAKKFAKATEKY--LKQPIAIVLDEQLI 188

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS-GIHLNGATANF 261
                     +   V+ N         +  L  +      +E +   + G  L   + N 
Sbjct: 189 SAPTVEDVITNGEAVITNIQSIENAAELAALIRAGALPVDLEQRQVTTVGPTLGADSLNK 248

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
             K     V + F  M           +    + ++L   + +A      +P     I  
Sbjct: 249 SLKAGLIGVALVFLFMLFYYRIPGLIADFSLLVYIMLVLIIFSAIGATLTLPGIAGFILS 308

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
                 A +L        L     +    + G      +I       +   V+      +
Sbjct: 309 IGMAVDANVLIFERMKEELRNGKTLRAAVDAGFHRALTTIIDSNITTIIAAVV------L 362

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           LY   G +  F++ L + + +++ + +  T
Sbjct: 363 LYFGTGPIKGFAVTLIIGIAVSMFTAITVT 392


>gi|307293543|ref|ZP_07573387.1| acriflavin resistance protein [Sphingobium chlorophenolicum L-1]
 gi|306879694|gb|EFN10911.1| acriflavin resistance protein [Sphingobium chlorophenolicum L-1]
          Length = 1052

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/602 (9%), Positives = 168/602 (27%), Gaps = 31/602 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +         + + +++  + F      +   + V   +  +
Sbjct: 59  PTELETQVTQRIEAAVRGISGVDEITSFVSEGRSQTNVQFQIGTPVDRAVNDVKNAVDQI 118

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L     +  +         I         +     E S  +      ++        
Sbjct: 119 RSDLPEGILEPQVSRVDIDGGPIAYFSAEATDMTLE--ELSWYVDNTVAKRLLAVPGMAA 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  ++    DP++L+    + ++++      N +  G    +     +      
Sbjct: 177 VTRGGGVSREIRVILDPAKLQSHGISASQVNQQLQQVNMNAAGGRTEIAGAEQAIRVLGN 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D   +    +                       G R        ++    A      +
Sbjct: 237 ARDAYALGQTQIAI--------------------SGGRTVKLADLADVRDMYAEQRSLSL 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +    +           S     + A  +   L+  +  ++       +V    G     
Sbjct: 277 MNGRQVTSFRMEKAKGSSDVTVFDEAMKVLDKLKEENPKVQ-YKQLYTSVEYTKGQYHSA 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                  A L ++++F+ +   +  +++  +I L+ I     + ++G TL   S+  + L
Sbjct: 336 MQAMIEGAVLAVVIVFLFLRDWRATMISALAIPLSAIPAFWFMDMMGFTLNGISLLALSL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLFF 479
             G+ VD  I+  E I    R  +S + +          A      + +   +   ++  
Sbjct: 396 VAGVLVDDAIVEIENIVRHMRMGKSAYQASIDAADEIGLAVLATTMAIVAVFLPVALMPG 455

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     F +T+ +++L+S+  A  I   +  + ++    +S     +   ++     +
Sbjct: 456 VSGQFFIQFGMTVVVAVLLSLAVARLITPMIAAYFLKAHGQESHGEGWMMDVYMAVLRWS 515

Query: 540 IQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
           +        RA       +       I  +    L +         L +     +D    
Sbjct: 516 LDERKAIAQRAHGGAARFTAWIRDHRIWTMGIGFLAFVATIFAFGTLPMSFQPTIDTDFS 575

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           +  +E++    +        K   +    +     A + +          +     + + 
Sbjct: 576 QVKIETVPGSTLQQTTAITRKVADMLAADKDMVEAAFSDIQTTGADIYLTLKKDRPMSSV 635

Query: 655 EI 656
           E 
Sbjct: 636 EW 637



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 79/257 (30%), Gaps = 6/257 (2%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                G  Q+ +   R V L+ +    +              +       + +    V  
Sbjct: 239 DAYALGQTQIAISGGRTVKLADLADVRDMYAEQRSLSLMNGRQVTSFRMEKAKGSSDVTV 298

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 V  K+ E  P    +           +        +  + +A++I       W 
Sbjct: 299 FDEAMKVLDKLKEENPKVQYKQLYTSVEYTKGQYHSAMQAMIEGAVLAVVIVFLFLRDWR 358

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             + +   + L       F  + G   N  ++ A+  + G  V+D +V  + +   ++  
Sbjct: 359 ATMISALAIPLSAIPAFWFMDMMGFTLNGISLLALSLVAGVLVDDAIVEIENI---VRHM 415

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVA 808
               S       + +E     + T+MA     LP+A+  G        F + +   ++++
Sbjct: 416 RMGKSAYQASIDAADEIGLAVLATTMAIVAVFLPVALMPGVSGQFFIQFGMTVVVAVLLS 475

Query: 809 ASSSIFIAAPILLFIYD 825
            + +  I   I  +   
Sbjct: 476 LAVARLITPMIAAYFLK 492


>gi|229820487|ref|YP_002882013.1| protein-export membrane protein SecD [Beutenbergia cavernae DSM
           12333]
 gi|229566400|gb|ACQ80251.1| protein-export membrane protein SecD [Beutenbergia cavernae DSM
           12333]
          Length = 670

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 111/547 (20%), Positives = 187/547 (34%), Gaps = 72/547 (13%)

Query: 46  LGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
           L LDL GG+ ++L     D  +  +  +      +R  +   G+    +     +  +  
Sbjct: 44  LALDLEGGTQIILTPNTTDGQEVTSDDVNQAIAIIRQRVDGSGVSEAEITSQGGRNIVVA 103

Query: 103 ADSRFKENIADKVTL----FLQGVNSKLNVDPKKNLLVTTTE---KEISIVLSQNNIDQV 155
                 +   D V+      ++ V  +          +   E      +   + +     
Sbjct: 104 MPGNPSQETIDLVSASAVMRMRAVLVESGPGAIDPAALEPGEEPTDGSTADPTADPTADP 163

Query: 156 ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG-------- 207
            + A + + +    R      S S      S       P +                   
Sbjct: 164 TAEATDAAPDGALPRETTPTPSPSDEATSESGEEPTAEPTDGATDAPAATPEEIDEAAFA 223

Query: 208 ------------------TTAKMSFHKVLPNNS----------------KKGFMFGVRFL 233
                             T+A  +                                    
Sbjct: 224 AADADGNGELSNTPATEPTSASDTAWITEQVTYDFYRLDCSLPENRTGGGGDDPDAPLVA 283

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPK-----THKPVVDISFDEMGARRFFEVTRD 288
             +DG    +    E+SG  L  A   +        T+ PVV ++F   G  +F E+T  
Sbjct: 284 CTTDGAAKYILGPAELSGSDLTSAQMVYQTTSTGAATNIPVVQMNFTSEGGEKFAEITTR 343

Query: 289 NIGKPLAVVLDGR-----------VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
             G      L+                   I     +     +  FT   A  LA  L  
Sbjct: 344 LAGLAAQPPLNQFAIVLDGNVISAPGVDEPIPNGEATISGPETNPFTRSQAQTLANQLNF 403

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           GSLPI  ++  +  + A LG + +  G  A + GLVL+VL+ +  Y     V   S+ + 
Sbjct: 404 GSLPITFDVQSQEQISATLGGEQLRNGVIAGLIGLVLVVLYTVFQYRGLAFVTLTSLAVA 463

Query: 398 VILTLALLSLLGA----TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
             LT   + LL       L+LP +AG+++ IG+  DS I+  ERIR+E R+ + +  +++
Sbjct: 464 GALTYGAILLLSWLQGYRLSLPGVAGLIIAIGVTADSFIVYFERIRDEVREGRVLTAAVE 523

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            G+ RA  TI  S+    +A VVL+F   G VRGFA T+GL+ L+ +         MM  
Sbjct: 524 QGWLRARRTILASDAVNFLAAVVLYFLAVGGVRGFAFTLGLTTLVDIVVVFLFTHPMMKI 583

Query: 514 IIRYKKM 520
           + R K  
Sbjct: 584 LARTKFF 590



 Score =  102 bits (252), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 75/218 (34%), Gaps = 8/218 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                     +              +     +     +Q+ E +   +  E +R G++  
Sbjct: 375 PNGEATISGPETNPFTRSQAQTLANQLNFGSLPITFDVQSQEQISATLGGEQLRNGVIAG 434

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAVAAVLTL 729
           +I  + +++Y   +++   A   +T+L +    T G   L     G   +L  VA ++  
Sbjct: 435 LIGLVLVVLYTVFQYR-GLAFVTLTSLAVAGALTYGAILLLSWLQGYRLSLPGVAGLIIA 493

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG + +  +V ++R+R  ++           +++         + +    F++ + +   
Sbjct: 494 IGVTADSFIVYFERIRDEVRE---GRVLTAAVEQGWLRARRTILASDAVNFLAAVVLYFL 550

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               +  FA  +    +V          P++  +   +
Sbjct: 551 AVGGVRGFAFTLGLTTLVDIVVVFLFTHPMMKILARTK 588


>gi|134093332|ref|YP_001098407.1| putative acriflavin resistance/multidrug efflux transporter AcrB
           [Herminiimonas arsenicoxydans]
          Length = 1024

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 79/615 (12%), Positives = 172/615 (27%), Gaps = 44/615 (7%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L+ ++   GLL         + +  FP                     L       +  
Sbjct: 1   MLFVLLGLAGLLS-----FKSAAVQDFPDIELPIVT---------VSAALSGAAPAQLET 46

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    ++  + L+        +      +T+ F   +   +  + V   +  V + L  
Sbjct: 47  EVARKIEDSVATLQGVKNIYTKVLDGLVTVTVEFILEKNLSDAVNDVRDAVASVRADLPA 106

Query: 129 DPKKNLLVTTTEKE-ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
           + +   +   +    + +  +            E S  +       I             
Sbjct: 107 ELRDPTVTKASTAGRVVLTFTAAAAPGSALDEQELSWFVDNTVSKAILAVPGIGAVKRVG 166

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
            +  ++  E D +++  L      +S    L      G    V     S      V+   
Sbjct: 167 GVTREVRVELDTAKMAALNVAAVDVSRRLKLVQQEAPGGRGDVSGAEQSVRTIATVQTAA 226

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           E++ + +                                   +   +A            
Sbjct: 227 ELAAMDI--------------------PLADGHHIRLDRVATVTDTIAERRSSASQDGKT 266

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +           S       +    A L+     +    +   N      +         
Sbjct: 267 VVGFEIFRTKGASELEVANGSRAAVAALQERYPNVVF-KLAIDNAKPVEENFEASMELLY 325

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             A L ++V++  +   +  LVA  ++ L+VI T   L+  G TL + ++  + L +G+ 
Sbjct: 326 EGAFLAVLVVWWFLRDWRATLVAAAALPLSVIPTFLGLAYFGYTLNMVTLLSLALVVGVL 385

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA--- 484
           VD  I+  E I    R  ++   +           +  +    +   +   F  G     
Sbjct: 386 VDDAIVEIENISRHLRMGKTPMQAAMEAADEIGMAVIATTFALVAVFLPTAFMAGIPGLF 445

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
            + F  T  L+IL S+  A  +   M  +I++    +      L + +L      +    
Sbjct: 446 FKQFGWTAVLAILASLLVARLLTPMMAAYILKPTAHREEKDGWLMQRYLKTMRWCLTHRL 505

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL-----ANRPVDLSVVRSNLE 599
                 GI    SI  + LL T  +      +  I + +      A     +  VR+ + 
Sbjct: 506 TTAIASGIFFFGSIMLVPLLPTGFVPAADRAQTQINVELPPGSTLAETTTVVEAVRTKIA 565

Query: 600 SLQIGDISFQNFDGE 614
             +     F +  G 
Sbjct: 566 ENKNIKSVFASIGGG 580



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 72/242 (29%), Gaps = 6/242 (2%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + +     + L  V +  +++     S              + +    +         
Sbjct: 231 MDIPLADGHHIRLDRVATVTDTIAERRSSASQDGKTVVGFEIFRTKGASELEVANGSRAA 290

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
              + E  P    +        +         +    + +A+L+  W    W   L A  
Sbjct: 291 VAALQERYPNVVFKLAIDNAKPVEENFEASMELLYEGAFLAVLVVWWFLRDWRATLVAAA 350

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L L +  T    A FG   N+  + ++  ++G  V+D +V  + +    +      +  
Sbjct: 351 ALPLSVIPTFLGLAYFGYTLNMVTLLSLALVVGVLVDDAIVEIENI---SRHLRMGKTPM 407

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
               ++ +E     + T+ A     LP A   G        F       I+ +   +  +
Sbjct: 408 QAAMEAADEIGMAVIATTFALVAVFLPTAFMAGIPGLFFKQFGWTAVLAILASLLVARLL 467

Query: 816 AA 817
             
Sbjct: 468 TP 469



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 61/157 (38%), Gaps = 9/157 (5%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
           E+   +  + L     + + I  + +   + + FK +   +  +  L L I        L
Sbjct: 821 ELGDAQEMQALFNSFGLAMAIGVLCIYGVLVLLFKDFMQPVTILAALPLSIGGAFVALLL 880

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                ++ ++  ++ L+G    + +++ D     +      ++  D +  + ++     V
Sbjct: 881 TRSALSMPSMIGLIMLMGIVTKNSILLVD---YAILARKAGMNRVDALVDACHKRSRPIV 937

Query: 774 YTSMAAFISVLPMAV--WGGSVIGSFAIPMAFGIVVA 808
            T++A    +LP+A+   G     S   PMA  ++  
Sbjct: 938 MTTIAMGAGMLPLALGWVGDPSFRS---PMAITVIGG 971


>gi|148255325|ref|YP_001239910.1| multidrug ABC transporter [Bradyrhizobium sp. BTAi1]
 gi|146407498|gb|ABQ36004.1| Multidrug resistance protein mdtC (Multidrug transporter mdtC)
           [Bradyrhizobium sp. BTAi1]
          Length = 1035

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 69/562 (12%), Positives = 148/562 (26%), Gaps = 38/562 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G++  +   +       FPS         G D            
Sbjct: 11  RRPVGTTLLSIGLFLVGIVAYIFLPVAPVPNVDFPSIF-VTATRPGAD------------ 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               + G +    +     +        +       I + F+  R  +  A  V   +  
Sbjct: 58  -PSVMAGTVAAPLERRLGEIAGVDQITSTSSLGTTNIQIQFSIGRDIDKAARDVQAAINA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  D              + V     +                    ++       
Sbjct: 117 SLSDLPSDLPALPRFRKANTAAAPVFV-LALTSKTLTPSAMYDVADTVLAQRLFQVPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +    +P  L     +T  +    +  N      +F             
Sbjct: 176 NVTVSGADQPAVRIALNPVSLANAGISTDDVRTAIINANPIGPVGIFE------------ 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G        N   +T     DI                ++   +  V    
Sbjct: 224 --------GGRQSETIAINRQMRTAAEFRDILIKSSNGSFVRLSDVADVEDSVRNVRSIA 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +   T++    L   L+                G    S   
Sbjct: 276 WFNKQPAVLIQIAKQGDANVIETVDRVKALIPELKQWLPAGIEISTLIDRTGTIRASVED 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A LV++V+F+ +      + A  S+ L +  T A + L G ++   S+  + 
Sbjct: 336 MQWTLLATAVLVMVVVFLFLRRLVPTVAAGVSVPLALAGTCAAMWLAGFSIDNLSLMALA 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E +            +   G  +   T+   +++ + A V L F  
Sbjct: 396 ISVGFVVDDAIVMIENMYRNLEHGLPPMRAALDGARQIGFTVLSISLSLIAAFVPLIFMD 455

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  +R F++T+  +I++S   ++++   +    I+                 +   +
Sbjct: 456 GVVGRLLREFSLTLTFAIVVSTLVSLTVTPMICAHYIKETLSDRASWFDRIVEGSLSGMV 515

Query: 539 AIQFMRARFWGVGISILFSICS 560
                  R   V   +   +  
Sbjct: 516 RFYAWTLRGVLVYPFLTLMVFF 537



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 23/135 (17%), Positives = 55/135 (40%), Gaps = 6/135 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            +    + A  ++ L +  T     L G   +  ++ A+   +G+ V+D +V+ + M +N
Sbjct: 356 RRLVPTVAAGVSVPLALAGTCAAMWLAGFSIDNLSLMALAISVGFVVDDAIVMIENMYRN 415

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           +      +           +     +  S++   + +P+    G V   +  F++ + F 
Sbjct: 416 L---EHGLPPMRAALDGARQIGFTVLSISLSLIAAFVPLIFMDGVVGRLLREFSLTLTFA 472

Query: 805 IVVAASSSIFIAAPI 819
           IVV+   S+ +   I
Sbjct: 473 IVVSTLVSLTVTPMI 487



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 74/240 (30%), Gaps = 11/240 (4%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
               L  L +              L+        +    R ++ +                
Sbjct: 795  ERGLSPLAVFHSQSFPSTTVSFNLLPDVPLQAATANIQRAVDELHMPEGIRGGFDGNAGD 854

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
               G      LI   +V + I          +       L  I+TL       L    + 
Sbjct: 855  FNKGSGRQPLLILSALVAMYIVLGV------LYESLAHPLTIISTLPSAGLGALLALQVT 908

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                 + A   ++ LIG    + +++ D   +        +S  D I ++        + 
Sbjct: 909  NTPLTVIAFVGIILLIGIVKKNGIMLVDFALE--AERQRGMSSADAIFEACRVRFRPILM 966

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++AA  + LP+ +    G  +     I +  G++V+   +++    I L I   R ++A
Sbjct: 967  TTLAALFAGLPLVLATGPGTELRRPLGITIIGGLLVSQILTLYTTPVIYLLIDRLRRRSA 1026


>gi|325928818|ref|ZP_08189985.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
 gi|325540791|gb|EGD12366.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
          Length = 1046

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/544 (11%), Positives = 145/544 (26%), Gaps = 38/544 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPIIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + L F  SR  ++ A  +   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSLVVLVFQSSRNIDSAAQDIQTAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      +     A E           ++       
Sbjct: 115 SQSDLPSGLGTPMYSKANPNDDPVIAIALTSE--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +  +  
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIISND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVSKAAD-------------------FAQLAISTQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR+   P                S   
Sbjct: 274 WFDGKPAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQATLMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E +     +  S   +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDDAIVVIENVMRHLDEGMSRLDAALAGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + + +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSPHAEPEKPGRFGAWLDRMHERM 513

Query: 539 AIQF 542
              +
Sbjct: 514 LRVY 517



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 338 LMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           + V+D +VV + +   M+     +S  D       E +G ++ +  A+ ++V    ++  
Sbjct: 398 FVVDDAIVVIENV---MRHLDEGMSRLDAALAGARE-IGFTIVSITASLVAVFIPMLFAS 453

Query: 792 SVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
            +I      F + +   IVV+   S+ +   +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPAL 485


>gi|254710937|ref|ZP_05172748.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella pinnipedialis B2/94]
 gi|256029320|ref|ZP_05442934.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella pinnipedialis M292/94/1]
 gi|261318518|ref|ZP_05957715.1| RND family transporter [Brucella pinnipedialis B2/94]
 gi|265986319|ref|ZP_06098876.1| RND family transporter [Brucella pinnipedialis M292/94/1]
 gi|261297741|gb|EEY01238.1| RND family transporter [Brucella pinnipedialis B2/94]
 gi|264658516|gb|EEZ28777.1| RND family transporter [Brucella pinnipedialis M292/94/1]
          Length = 1026

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 157/605 (25%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDI 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIHAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDIWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISREL-----IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIHAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 90/247 (36%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRVPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPM 1002

Query: 819  ILLFIYD 825
            I + I  
Sbjct: 1003 IFVEIDR 1009


>gi|152986594|ref|YP_001350280.1| multidrug efflux protein [Pseudomonas aeruginosa PA7]
 gi|150961752|gb|ABR83777.1| probable RND efflux transporter [Pseudomonas aeruginosa PA7]
          Length = 1018

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 160/524 (30%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G+         + ++  +P                    +    
Sbjct: 9   RRPVLACVVSLLIVLLGM-----QAFSKLVIREYPQMENALIT---------VTTLYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + G++     +  +  +         RQ  + I++        + +  ++      
Sbjct: 55  NAETIQGYITQPLQQSLASAEGIDYMTSVSRQNYSTISIYARIGANTDRLVTELLAKSNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D +  +L        +++      +Q+ +   + +  + R    ++       
Sbjct: 115 VKSQLPPDAEDPVLQKEAADASALMYISFYSEQMNN--PQITDYLSRVIQPKLATLPGIA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP ++     T  +++      N          + +  S     
Sbjct: 173 EAEILGNQVFAMRLWLDPVKMAAFGVTAGEINQAVRQYNFLAAAGEVKGQLVVTSVNAST 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                      +    I     G RR        +    A      
Sbjct: 233 DLKSP--------------------QAFAAIPVKTDGDRRVLMGDVARVELGAASYDAIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                        G    +    I+        L     P     +          S   
Sbjct: 273 SFNGIPSVYIGIKGTPSANPLDVIKEVRAKMPELEEQLPPNLKVSIAYDATRFIQASIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   +I L++I  L  +  +G ++ L ++  +V
Sbjct: 333 VVKTLGEAVLIVIVVVFLFLGAFRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD  I+V E I     + ++ F +   G       +    IT       + F  
Sbjct: 393 LAIGLVVDDAIVVVENIHRHIEEGKTPFDAALEGAREIAIPVVSMTITLAAVYAPIGFLT 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   + FA T+  +++IS   A+++   M   ++R+++  S
Sbjct: 453 GLTGALFKEFAFTLAGAVIISGIVALTLSPMMCSRLLRHEENPS 496



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/131 (17%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   L  + T+ L +   L F    G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 FRSVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 +  D   +   E     V  ++       P+       G++   FA  +A  ++
Sbjct: 412 HIEEGKTPFDAALEGAREIAIPVVSMTITLAAVYAPIGFLTGLTGALFKEFAFTLAGAVI 471

Query: 807 VAASSSIFIAA 817
           ++   ++ ++ 
Sbjct: 472 ISGIVALTLSP 482



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 74/214 (34%), Gaps = 10/214 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N  +   +           ++ + ++                  +    L    +V   +
Sbjct: 797  NSAIISGFPIVSMGEAIETVQQIAREEAPRGFAVDYAGASRQYVQEGNAL----LVTFGL 852

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG   
Sbjct: 853  ALAIIFLVLAAQFESFRDPLVIMVTVPLSICGALVPLFLGVSSLNIYTQVGLVTLIGLIS 912

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGG 791
               +++ +    N   +   +  R+ I+++    L   + T+ A  + V+P+ +    G 
Sbjct: 913  KHGILIVE--FANQLRHEQGLGRREAIEQAAAIRLRPVLMTTAAMVLGVIPLILASGAGA 970

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                   I +A G+ V    ++F+   I   +  
Sbjct: 971  VSRFDIGIVIATGMSVGTLFTLFVLPCIYTLVAR 1004


>gi|313106433|ref|ZP_07792664.1| putative RND efflux transporter [Pseudomonas aeruginosa 39016]
 gi|310879166|gb|EFQ37760.1| putative RND efflux transporter [Pseudomonas aeruginosa 39016]
          Length = 1036

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 145/492 (29%), Gaps = 24/492 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            + +L     + +   +    +   S +        S     + +TL F+  +  +  A 
Sbjct: 51  INALLPGGSPETMASSVATPLEVQFSAIPGITEMTSSSALGTSTLTLQFSLDKSIDVAAQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L VD              S ++    ++  +   IE S         Q
Sbjct: 111 EVQAAINAAAGRLPVDMPNLPTWRKVNPADSPIMI-LRVNSEMMPLIELSDYAETILARQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       Q     +    +  +  P +L     T A +                     
Sbjct: 170 LSQVNGVGQIFVVGQQRPAIRIQAQPEKLAAYQLTLADLRQSLQS--------------- 214

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +          ++   AN          D+          F      I   
Sbjct: 215 -----ASVNLAKGALYGEGRVSTLAANDQLFNASDYDDLVVAYRQGAPVFLKDVARIVSA 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             +   +   +   T +        LR          V      
Sbjct: 270 PEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAALPRLREMLPATIEVDVLNDRTR 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +  GLV++V+ + +      L+    + +++  + A + +LG TL 
Sbjct: 330 TIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVATVLAVSLSASFAAMYVLGFTLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  +++ +G  VD  I+V E I        S   +   G +    T+   + + + A
Sbjct: 390 NLTLVALIIAVGFIVDDAIVVVENIHRHLEAGASKVEAALKGAAEIGFTVISISFSLIAA 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   R FA+++ ++ILIS+  ++++   +    +   +         + 
Sbjct: 450 FIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTLAPMLASRFMPALRHAEAPRKGFAE 509

Query: 531 FFLIPDCIAIQF 542
           +        +++
Sbjct: 510 WLTGGYERGLRW 521



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 95/244 (38%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L  V   + + +   +           LV L+    + V     ++   
Sbjct: 249 VVAYRQGAPVFLKDVARIVSAPEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAAL 308

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ E++P +   +      +  R  + +  + ++++   +++ + +  +   A   + T
Sbjct: 309 PRLREMLPATIEVDVLNDRTRTIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVAT 368

Query: 700 -LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L + ++ +     + G   N   + A++  +G+ V+D +VV + +    +      S  
Sbjct: 369 VLAVSLSASFAAMYVLGFTLNNLTLVALIIAVGFIVDDAIVVVENIH---RHLEAGASKV 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S +   + +P+   GG V      FA+ +   I+++  +S+ +
Sbjct: 426 EAALKGAAEIGFTVISISFSLIAAFIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTL 485

Query: 816 AAPI 819
           A  +
Sbjct: 486 APML 489



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 89/235 (37%), Gaps = 6/235 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                    Q         V L +     V+    ++ V++   EI   STI        +
Sbjct: 790  AAPRSGPLQINHNGMFPAVNLSFNLAAGVSLGEAVQAVQRAQEEIGMPSTIIGVFQGAAQ 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
              +  +    + ++ + IA+ I + + ++ +   L  ++TL       +     +G +F+
Sbjct: 850  AFQSSLASQPLLILAALIAVYIILGVLYESFVHPLTILSTLPSAGIGAVFLLWAWGQDFS 909

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + A+  ++ LIG    + +++ D     +      +S    I ++        + T++AA
Sbjct: 910  IMALIGIVLLIGIVKKNGILMVD--FAIVAQREQGMSAEQAIYQACLTRFRPIMMTTLAA 967

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  +P+ +    G  +     I +  G++V+   ++F    + L +     +  
Sbjct: 968  LLGAIPLMIGFGTGSELRQPLGIAVVGGLLVSQVLTLFSTPVVYLALERLFHRRG 1022


>gi|153001034|ref|YP_001366715.1| acriflavin resistance protein [Shewanella baltica OS185]
 gi|151365652|gb|ABS08652.1| acriflavin resistance protein [Shewanella baltica OS185]
          Length = 1085

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 65/513 (12%), Positives = 141/513 (27%), Gaps = 41/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++        +  +   P                    + +  
Sbjct: 9   KRPVTVWMFMLAVILFGMV-----GFSRLAVKLLPDLSYPTLT---------IRTMYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K         R   + + L F      +  +  V   L  
Sbjct: 55  APVEVEQLVSKPIEEAVGVVKGLRKISSISRSGMSDVVLEFEWGTTMDMASLDVREKLDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-HAIEQSMEIIRQRIDQIGISEST 180
           +   L +D KK LL+        I+    ++         +       +   ++      
Sbjct: 115 I--ALPLDVKKPLLLRFNPNLDPIMRLALSVPNASEADLKQMRTYAEEELKRRLEALSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S  +  ++  + +  +L QL      +                            
Sbjct: 173 AAVRLSGGLEQEVHIQLNQEKLSQLNLNADDIKRRINEE--------------------N 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     I G             +   +  +                 I        D 
Sbjct: 213 INLSAGKVIQGDREYLVRTLNQFNSLDELGQVIVYRDEQTLVRLFEVATITDAFKERSDI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + +    +     +   +     +        +           V          + S
Sbjct: 273 TRIGSQESIELAIYKEGDANTVAVAKKLRDELVKINQ-DPKQNKLEVIYDQSEFIESAVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  + + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI
Sbjct: 332 EVTSSALMGSLLSMLVIYLFLRNIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGI 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L IGL VD+ I+V E I     +  S   +   G       IF S +T L   V L F 
Sbjct: 392 ALAIGLLVDNAIVVLENIDRCRSEGMSKLDAAVTGTKEVAGAIFASTLTTLAVFVPLVFV 451

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
               G      A+T+  ++L S+  A++ +  +
Sbjct: 452 DGIAGALFSDQALTVTFALLASLLVALTSIPML 484



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 63/213 (29%), Gaps = 6/213 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            ++      L  +                        + L            V + ++ +
Sbjct: 244 VIVYRDEQTLVRLFEVATITDAFKERSDITRIGSQESIELAIYKEGDANTVAVAKKLRDE 303

Query: 642 ITEIVPLSTIQNTEIVGPK---ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           + +I         E++  +   I   +       ++ S ++ML+           L    
Sbjct: 304 LVKINQDPKQNKLEVIYDQSEFIESAVSEVTSSALMGSLLSMLVIYLFLRNIIPTLIISI 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++   +  T        I  N+ ++  +   IG  V++ +VV + +    +  +  +S  
Sbjct: 364 SIPFSVIATFNMMYFADISLNIMSLGGIALAIGLLVDNAIVVLENI---DRCRSEGMSKL 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           D       E  G    +++      +P+    G
Sbjct: 421 DAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDG 453



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 95/251 (37%), Gaps = 13/251 (5%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +N+P+ LS V      L    I+  +          L Y             + ++
Sbjct: 826  INPNSNQPIALSAVAEVSLQLGPSAINRISQQRVALVSANLAYGDLSDAVAQAQQILSQQ 885

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             +   V        E +         +   + +I++   + + +  +F+     L  +  
Sbjct: 886  VLPASVQARFGGQNEEMEHS-----FQSLKIALILAIFLVYLVMASQFESLLHPLLILFA 940

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + + +  ++    +     ++     ++ L G  VN+ +V+ DR+    +L +  +   D
Sbjct: 941  VPMALAGSVLGLYITQTHLSVVVFIGLIMLAGIVVNNAIVLVDRIN---QLRSEGVEKLD 997

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I  +    L   + T++   + +LPMA+    G  V    AI + FG+ + ++    I 
Sbjct: 998  AIRAAAKSRLRPIMMTTLTTTLGLLPMALGLGDGSEVRAPMAITVIFGLSL-STLLTLIV 1056

Query: 817  APILLFIYDWR 827
             P+L  ++D +
Sbjct: 1057 LPVLYALFDRK 1067


>gi|218296543|ref|ZP_03497271.1| acriflavin resistance protein [Thermus aquaticus Y51MC23]
 gi|218243085|gb|EED09617.1| acriflavin resistance protein [Thermus aquaticus Y51MC23]
          Length = 1101

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/498 (11%), Positives = 130/498 (26%), Gaps = 30/498 (6%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                     + V   +    ++  S L        S  +  + + + F      +  A 
Sbjct: 50  VSTAYPGAGPEEVAEQVSKPLEDALSTLSGVDTIGSSSTEGFSLVFVQFQQGVNVDQAAV 109

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V+  +      L  D    ++         I+              E      R    +
Sbjct: 110 EVSQKVAAARGSLPKDASAPVVQKFDPSASPILYIALEAPG--EDLSEVLRYAERSLKPR 167

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           + +         +      +    DPSRL+ L     ++         +           
Sbjct: 168 LQLVPGVADIRLTGAPKRAIRVYLDPSRLQALGVAPGQVVQAISASALNLPLGNLTQEEK 227

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           R     +       E++G+ +                        +R         + + 
Sbjct: 228 RLVYTLRSTPATPEEVAGLLV----------------------DPSRGIRVRDVARVEER 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                    L                +     +      A+      P     V      
Sbjct: 266 PEAPSTLNRLNGRPAVLLAVVKTPSANAVAVADGVKK--ALEGTKLPPGYRAEVALDTTR 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +       + A  V +V+ + +           +I + +   + L  +LG T  
Sbjct: 324 FIRAAVNDTVREAFLAALAVSLVVLIFLGKLNSVFSVILAIPITLSGAILLFGVLGFTYN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L S+  + + +G+ VD +I+V E I    R       ++  G S     +  + ++ L  
Sbjct: 384 LISLLALTVAVGIVVDDSIVVAENIDRYRRMGFGPKEAVLKGASEVSVAVAAATLSLLAV 443

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + + F     G   + F + M  +I +S   A+  +   + +     +  +      + 
Sbjct: 444 FLPISFLPGIIGQIFQQFGLGMAAAIAVSWLEALLFLTVRLAYFPDP-EPPTFREALRAL 502

Query: 531 FFLIPDCIAIQFMRARFW 548
             L  D         R  
Sbjct: 503 TLLPQDLAWAYRRGFRTP 520



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 57/152 (37%), Gaps = 12/152 (7%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             + +    L+ +    K       I  + + ++  +  F + G  +NL ++ A+   +G
Sbjct: 336 AFLAALAVSLVVLIFLGKLNSVFSVILAIPITLSGAILLFGVLGFTYNLISLLALTVAVG 395

Query: 732 YSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             V+D +VV    DR R            ++ + K  +E        +++     LP++ 
Sbjct: 396 IVVDDSIVVAENIDRYR------RMGFGPKEAVLKGASEVSVAVAAATLSLLAVFLPISF 449

Query: 789 WG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                G +   F + MA  I V+   ++    
Sbjct: 450 LPGIIGQIFQQFGLGMAAAIAVSWLEALLFLT 481



 Score = 38.9 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 30/74 (40%), Gaps = 12/74 (16%)

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLYTTSISFRDLID 762
                  L G   ++ +V  V+ LIG    + +++ D    RMR+        +  ++ + 
Sbjct: 973  AFWLTYLLGTGLDVISVLGVVMLIGLVTKNAILLLDFAVKRMRE--------MPLKEALV 1024

Query: 763  KSINETLGRSVYTS 776
            ++    L   + TS
Sbjct: 1025 EAARLRLRPILMTS 1038


>gi|294664147|ref|ZP_06729535.1| RND superfamily protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292606080|gb|EFF49343.1| RND superfamily protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 1046

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/544 (11%), Positives = 145/544 (26%), Gaps = 38/544 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPIIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + L F  SR  ++ A  +   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSLVVLVFQSSRNIDSAAQDIQTAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      +     A E           ++       
Sbjct: 115 SQSDLPSGLGTPMYSKANPNDDPVIAIALTSE--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +  +  
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIISND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVSKAAD-------------------FAQLAISTQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR+   P                S   
Sbjct: 274 WFDGKPAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTVTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQATLMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E +     +  S   +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDDAIVVIENVMRHLDEGMSRLDAALAGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + + +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSPHAEPEKPGRFGAWLDRMHERM 513

Query: 539 AIQF 542
              +
Sbjct: 514 LRVY 517



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 338 LMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           + V+D +VV + +   M+     +S  D       E +G ++ +  A+ ++V    ++  
Sbjct: 398 FVVDDAIVVIENV---MRHLDEGMSRLDAALAGARE-IGFTIVSITASLVAVFIPMLFAS 453

Query: 792 SVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
            +I      F + +   IVV+   S+ +   +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPAL 485


>gi|300022460|ref|YP_003755071.1| acriflavin resistance protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299524281|gb|ADJ22750.1| acriflavin resistance protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 1038

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 62/505 (12%), Positives = 137/505 (27%), Gaps = 32/505 (6%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            +  +GL +A         +   PS                  +     +   +   +  
Sbjct: 15  ALLAVGLFLAGVMAYTFLPVASMPSMEFPTIR---------VSVTRPGADPATMAASVAA 65

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             +     +        S     + IT+ F  SR  +     V   L    + L  D  +
Sbjct: 66  PLERRLGEIAGVTEMTSSSALGTSSITMQFDLSRSADGAGRDVQAALNAATADLPGDLPQ 125

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
                      S +L    +                    +I   E       S      
Sbjct: 126 VPTFRKYNPSGSPILI-LALTSDTMTTSGIYDTADTVIAQRISQVEGVADVSVSGADQPA 184

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
              + DP     +  +  ++       N+                 +   + D  +    
Sbjct: 185 TRVQVDPVLTAAMGVSFEQVRQAIEAANDLSPIGSIDGGTQSIILASNPQLLDPED---- 240

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                              +  ++             +       L             I
Sbjct: 241 ---------------YKNIVVKNQPNGDIVRVGDVAKVVLATRNRLSSAQFNNKPAVLLI 285

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            +   + +   T++    L   LR          V     G    S    + T AI   L
Sbjct: 286 ITKTPEANVIDTVDRVKALLPQLRQWIPAGITISVLSDRTGTIRASVEDMQMTLAITILL 345

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           V+ V+F+ +      + A  ++ L++  T A +   G ++   ++    + +G  VD  I
Sbjct: 346 VMSVVFVFLRRSTPTIAAGITVPLSLAGTCAAMWAAGYSINNLTLMAFAVAVGFVVDDAI 405

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFA 489
           ++ E +     +      +   G  +   T+   +++ + A + + F     G  +  FA
Sbjct: 406 VMIENVYRNMERGMKPMQAALEGARQIGFTVISISVSLIAAFIPVLFMTGIAGRLLHEFA 465

Query: 490 ITMGLSILISMFTAISIVRAMMIFI 514
           +T+  SI+IS   ++++   +    
Sbjct: 466 MTLMFSIIISAIVSLTVTPMICAHF 490



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 87/237 (36%), Gaps = 7/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +  V   + + +    S Q  +     L+  +    + +     ++ +  ++ + +
Sbjct: 253 DIVRVGDVAKVVLATRNRLSSAQFNNKPAVLLIITKTPEANVIDTVDRVKALLPQLRQWI 312

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-LGAITTLILDIT 705
           P     +         R  +    + + I+ + ++  +++  +     + A  T+ L + 
Sbjct: 313 PAGITISVLSDRTGTIRASVEDMQMTLAITILLVMSVVFVFLRRSTPTIAAGITVPLSLA 372

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   N   + A    +G+ V+D +V+ + +    +     +       +  
Sbjct: 373 GTCAAMWAAGYSINNLTLMAFAVAVGFVVDDAIVMIENV---YRNMERGMKPMQAALEGA 429

Query: 766 NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     +  S++   + +P+       G ++  FA+ + F I+++A  S+ +   I
Sbjct: 430 RQIGFTVISISVSLIAAFIPVLFMTGIAGRLLHEFAMTLMFSIIISAIVSLTVTPMI 486


>gi|296447838|ref|ZP_06889750.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
 gi|296254638|gb|EFH01753.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
          Length = 1031

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 79/680 (11%), Positives = 193/680 (28%), Gaps = 42/680 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   ++  +G    L   + +      P                   +     
Sbjct: 11  RRPLPSIVFSIILLFLGWTSFLQLPITRLPNADIPMIS--------------VVVSQFGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S ++       S+    +  T+ F      +   + V   +  
Sbjct: 57  APAEIEAQVTKTIEDGVSGVEGVRHISSSITDGLSVTTIIFRLETNTDKALNDVKDAVAR 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + ++ L+       + IV    +         E S  +       +   +   
Sbjct: 117 VRFNLPRNIEEPLVQRVDVVGLPIVTYAASAPGKSPE--EVSWFMENTVKRSLQDVKGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      +  ++    D  RL+    +   +S    + N +  G    +     +     
Sbjct: 175 QIEIIGGVSREILVSLDADRLQAFGLSAVDVSQRLYVTNVTVTGGRAEIGGRDQAIRTIA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   E +G+ +   T                               I   +A      
Sbjct: 235 SAKTLEEFAGLMIALPT--------------------GGEVRLQDLGTITDTIAERRTFA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +           S              LRA      L  + + +V    G+   
Sbjct: 275 RLDGRPVVAVGVKRANGASDVDVASAVEKRVEGLRAKYPDYDL-QLIDTSVEVTRGNYDA 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++++ + +   +  ++   S+ L++     ++  LG +L L S   I 
Sbjct: 334 AIHTLFEGAILAVVIVLLFLRDLRATVIVAISLPLSIFPAFWVMDALGFSLNLVSFLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLF 478
           L  G+ VD +I+  E I    R  ++   +          A   I  + +        + 
Sbjct: 394 LSTGILVDDSIVEIENIVRHIRMGKTALRAASDAADEIGLAVIAISLTIVAIFAPASFMP 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ + +L S+  A  +   +  ++++  + +      + R +      
Sbjct: 454 GIAGQFFKQFGVTVAVQVLFSLLAARLVTPMLAAYLLKPHQAEEKPPGAILRAYEKLVAF 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-DLSVVRSN 597
           ++   +       +    SI SI LL    L      +  + + +     + D       
Sbjct: 514 SVHHYKLTVLVGLLFFAASILSISLLSKGFLPAQDSARSVMMVELPPGSQISDTEKTTEE 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           + ++       +N   +   +     +   +          +++IT+      I      
Sbjct: 574 IVAIIHELPEVRNVFVDGGRISNGPMEARRATLIVNYTGKSERQITQRDLEQEIGRRLRK 633

Query: 658 GPKISRELI-RKGIVGVIIS 676
            P I    +   G+  + + 
Sbjct: 634 APDIRYYFVDENGLRAISLV 653



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/154 (12%), Positives = 51/154 (33%), Gaps = 6/154 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +A++I +         +    +L L I          G   NL +  A+    G  V
Sbjct: 341 GAILAVVIVLLFLRDLRATVIVAISLPLSIFPAFWVMDALGFSLNLVSFLAITLSTGILV 400

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +V  + +   ++      +       + +E     +  S+       P +      G
Sbjct: 401 DDSIVEIENI---VRHIRMGKTALRAASDAADEIGLAVIAISLTIVAIFAPASFMPGIAG 457

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                F + +A  ++ +  ++  +   +  ++  
Sbjct: 458 QFFKQFGVTVAVQVLFSLLAARLVTPMLAAYLLK 491



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 84/239 (35%), Gaps = 9/239 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  LQ           ++N    ++     S A   VLE +++   +      +   E
Sbjct: 772  SAVADLQFTQGPTNITRYDRNRQATVEADLVGSAALGDVLEAIEQLPVKKSLPPGVTVGE 831

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT-KTLGFFAL 713
                +   EL       +    + +   + + F  +   +  + +L L I     G   +
Sbjct: 832  SGDAESLNELSDGFAQVLGAGLLMVYAVLVLLFGSFLQPVTILFSLPLSIGGAVFGLM-M 890

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G    +     +L L+G    + +++ D   +++      +   + I  +  +     V
Sbjct: 891  VGKTLTVPVWIGILMLMGIVTKNAIMLVDFALESVWA---GVPKDEAIIDAGRKRARPIV 947

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             T++A    ++P A+    GG      AI +  G++ +   S+     + + +  +  K
Sbjct: 948  MTTIAMIAGMMPSALAFGIGGEFRSPMAIAVIGGLIFSTLLSLIFVPAVFMMVSTFGDK 1006


>gi|259507382|ref|ZP_05750282.1| protein-export membrane protein SecD [Corynebacterium efficiens
           YS-314]
 gi|259165007|gb|EEW49561.1| protein-export membrane protein SecD [Corynebacterium efficiens
           YS-314]
          Length = 637

 Score =  141 bits (354), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 115/580 (19%), Positives = 209/580 (36%), Gaps = 65/580 (11%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             I   ++   G+                P         LG+DL+GG+ + L     +  
Sbjct: 31  RAIAIFVLILFGVYAL---VFFTGDRSATP--------KLGIDLQGGTRVTLVPQGQEPT 79

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR--FKENIADKVTLFLQGVNS 124
              L      L + +   G+   S+    N + ++         + +     L  + V  
Sbjct: 80  QDQLNQARVILENRVNGMGVTGASVVADGNTLVITVPGEDVAQAQALGQTSQLLFRPVGQ 139

Query: 125 KLNVDPKKN---------------LLVTTTEKE------ISIVLSQNNIDQVISHAIEQS 163
               D                   ++              ++V ++   ++    A E  
Sbjct: 140 AGMPDMTTLMPVLEDMANRWVEYGVITEDEANTALAEMHSAVVETEQAGEEPAETAGEAP 199

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
                   +     E+T +R     +L       DP+       +  + +  ++ P    
Sbjct: 200 TVTAEPMPEPANSIEATERRQEITEMLRTDRQSTDPTTQIA-ASSLMQCTPDEMDPIAGT 258

Query: 224 KGFMFGVRFLRDSDGNQYLV------------EDKVEISGIHLNGATA-------NFDPK 264
                 +     + G  Y++            ED   ++G  ++                
Sbjct: 259 DDPRLPLVACDRASGGVYILDPAPLLQGETDEEDGARLTGNEIDTDRPITGGFNSQTGQM 318

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQISGNF 323
                      E G+  +  +T + + + +A+ LD  V++APVI  A        I+G+F
Sbjct: 319 EINFAFKSGAGESGSATWAALTNEYLQQQIAITLDSEVISAPVIQSATPVGSATSITGDF 378

Query: 324 TIETAGILAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           T E A  LA  LR G+LP+               V   LG+ S+  G  A V G+VL+ +
Sbjct: 379 TQEEATELANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLQAGLIAGVVGIVLVAI 438

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNIL 433
           F+   Y  +G V+ F++     L    L LL    G +L L  IAG+++GIG   DS ++
Sbjct: 439 FVFAYYRVFGFVSLFTLVAAGALVYGSLILLGRWIGYSLDLAGIAGLIIGIGTTADSFVV 498

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
             ERI++E R+ +S   +    + RA  TI   N+  LI  V ++    G V+GFA T+G
Sbjct: 499 FYERIKDEVREGRSFRSAAPRAWERAKRTIVTGNMVTLIGAVAIYLLAVGEVKGFAFTLG 558

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L+ +  +     +   ++I   R        +N +SR + 
Sbjct: 559 LTTVFDILVTFLVTAPLVILASRKPVFAKPSVNGMSRVYR 598



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 10/219 (4%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +     Q   +     +                   T  V P +    ++ G++ 
Sbjct: 369 GSATSITGDFTQEEATELANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLQAGLIA 428

Query: 673 VIISAIAMLIYIWIRFKW-----YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            ++  + + I+++  ++       F L A   L+      LG     G   +L  +A ++
Sbjct: 429 GVVGIVLVAIFVFAYYRVFGFVSLFTLVAAGALVYGSLILLG--RWIGYSLDLAGIAGLI 486

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             IG + +  VV Y+R++  ++      SFR    ++        V  +M   I  + + 
Sbjct: 487 IGIGTTADSFVVFYERIKDEVRE---GRSFRSAAPRAWERAKRTIVTGNMVTLIGAVAIY 543

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +     +  FA  +    V     +  + AP+++     
Sbjct: 544 LLAVGEVKGFAFTLGLTTVFDILVTFLVTAPLVILASRK 582


>gi|54298815|ref|YP_125184.1| hypothetical protein lpp2880 [Legionella pneumophila str. Paris]
 gi|53752600|emb|CAH14033.1| hypothetical protein lpp2880 [Legionella pneumophila str. Paris]
          Length = 1014

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 79/675 (11%), Positives = 170/675 (25%), Gaps = 42/675 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++    +IL +MI  +GLL      L    +  +P                         
Sbjct: 9   KHPVITIILNAMIVVLGLL-----CLYNLSVREYPDINFPTIT---------VSASYPNA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    ++  + ++              +ITL F      +         +  
Sbjct: 55  SPDLVETAITNVLEDRLAGIEGLETITSQSSAGYAQITLMFRSGTSMDRALSTTQDAVGV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +   +    +          +++       E +        +     +   
Sbjct: 115 AKALLPPEVRSPTVERQRKSNGLP-FIGISLESTSKDFGELTHYANLNLKNVFRSVQGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                            P +L        ++         S     +  +     +    
Sbjct: 174 SVEVWG-QPYTYNITLQPEKLFSFGVNVDEIVNALAKNRISLPAGNYRNKIPSTLNSELK 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             ED                         ++             +  N+           
Sbjct: 233 TRED-----------------------YENLLIKANSKHPILLKSLANVALETDNSQMRV 269

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          +   + +     +    +   L+ G                   S   
Sbjct: 270 RVNGHAGVVLSINKANEANPIEVSKEIRKVIKGLQQGLPKDLKINTIIDQSDFINASIKN 329

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        LVLI++F+ +   K  ++   +I ++++ +L  L L G ++ L ++  +V
Sbjct: 330 IRSAIGEAIFLVLIIVFLFLRNIKATIIPLITIPISLLGSLLFLKLFGFSINLMTLLAMV 389

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I        S   +   G       I     T     + + F  
Sbjct: 390 LAIGLVVDDAIIVLENIWRHIESGLSPLDAALKGAREIGFAIIAMTFTLSSVYLPIAFIQ 449

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    FA+ +  S+ IS   A+++   M   ++             +   L     
Sbjct: 450 GMLGQLFVEFAVALAGSVFISGIVALTLSPLMCANLLSASSKNWWPQFDNALEKLTKHYS 509

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I     +   + +         C  F + +++    K    L  +   PV    +    
Sbjct: 510 NILQFILKHQKITLLTALISVVACFGFYNLISHETAPKEDRGLIGIYIPPVAGEDIGMLD 569

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                 +          N L  +    G  V   +      +   +IV            
Sbjct: 570 NKTGKLEKKLDAIPEANNRLTFIGDWGGSIVLPLKPHAQRHRSANQIVEKLRPSFNHFPS 629

Query: 659 PKISRELIRKGIVGV 673
                     G+ GV
Sbjct: 630 MDPHVWSWDTGLPGV 644



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                + T+ L  +  L F  LFG   N+     ++TLIG      +++ +      KL+ 
Sbjct: 865  PFIILFTVPLACSGALLFTYLFGQSLNIYTQVGLITLIGLISKHGILIVEFAN---KLHK 921

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
               S  + I KS    L   + T+ A     +P+ +    G     +    +  G+ +  
Sbjct: 922  DGASLPEAIQKSAALRLRPILMTTGAMVFGAIPLVLSHDAGSESRHAIGTVLISGLGLGT 981

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
              ++F+   +   I        +
Sbjct: 982  LFTLFVLPAVYNIIKSKLIDMQK 1004



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 93/245 (37%), Gaps = 8/245 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +   +  P+ L  + +         +  +        L   +    + +  ++ +  V 
Sbjct: 241 LIKANSKHPILLKSLANVALETDNSQMRVRVNGHAGVVLSINKANEANPIEVSKEIRKVI 300

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
           K + + +P     NT I         I+     +  +   +LI +++  +     +  + 
Sbjct: 301 KGLQQGLPKDLKINTIIDQSDFINASIKNIRSAIGEAIFLVLIIVFLFLRNIKATIIPLI 360

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ + +  +L F  LFG   NL  + A++  IG  V+D ++V + +    +   + +S  
Sbjct: 361 TIPISLLGSLLFLKLFGFSINLMTLLAMVLAIGLVVDDAIIVLENI---WRHIESGLSPL 417

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           D   K   E     +  +       LP+A      G +   FA+ +A  + ++   ++  
Sbjct: 418 DAALKGAREIGFAIIAMTFTLSSVYLPIAFIQGMLGQLFVEFAVALAGSVFISGIVAL-T 476

Query: 816 AAPIL 820
            +P++
Sbjct: 477 LSPLM 481


>gi|330827452|ref|YP_004400652.1| membrane export protein [Staphylococcus saprophyticus subsp.
           saprophyticus MS1146]
 gi|328887850|emb|CBW54943.1| membrane export protein [Staphylococcus saprophyticus subsp.
           saprophyticus MS1146]
          Length = 879

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 84/620 (13%), Positives = 189/620 (30%), Gaps = 68/620 (10%)

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +           + T+ +I   L  +         + N                  + +
Sbjct: 74  IVFHSNKNDGLNNKDTKKDIEDALDNIRQNDDYIQNISNPYDSGQVNDEGDTAIANVSYV 133

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA----------IVAGLVLIVLFMI 380
           +       S    ++   +             +G+            +   +  ++L + 
Sbjct: 134 VPQTGLKDSSKHIIDKELKDVTDNHNVQIEKTQGSSMNAEIGGTSEIVGIVVAFVILLIT 193

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLAVDSNILVNER 437
                   +   S  + +  ++ +++LL     +P+      +++G+ + +D ++ +  R
Sbjct: 194 FGSLIAAGMPIISAIIGLGSSVGIIALLTYIFDIPNFTLTLAVMIGLAVGIDYSLFILFR 253

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
            +E  +K      ++      A S +  + +T +IA   L   G   +        +S+L
Sbjct: 254 FKELKKKGVDTVEAIATAVGTAGSAVIFAGLTVMIAVCGLSLVGIDFLSVMGFASSISVL 313

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
            ++  A++++ A++    +  K+K                  +           I ++ +
Sbjct: 314 FAVLAALTLLPALISIFHKSIKIKDKPSKSKDPKDHPWAKFIVGKPVIAVIVSLIILILA 373

Query: 558 ICSICLLFT--------------------HGLNYGIDFKGGIQLGVLANR-------PVD 590
              +  +                         N+G  + G I + V             D
Sbjct: 374 AIPVSGMRLGIPDDSLKPTDSSEYKAYKLISDNFGEGYNGQIVMLVNTKDGGSKSTIERD 433

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ +RS++E +   D   +    + N        P           +V            
Sbjct: 434 LNNMRSDVEDIDNVDTVSKAQLTDNNNYALFTIIPEKGPNSQSTENLVYDLRDYHSQAQE 493

Query: 651 IQNTEIVGPKISRELIRKG---------IVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             + +      S   I              GVI+    +L+ I  R      L A+   I
Sbjct: 494 KYDYDTEISGQSVINIDMSEKLNNAIPVFAGVIVVLAFVLLMIVFR-SILVPLKAVLGFI 552

Query: 702 LDITKTLGFF----------ALFGIEFNLTAVA-----AVLTLIGYSVNDKVVVYDRMRK 746
           L +  TLGF           +LFGIE     +A      +  L G +++ ++ +  R+ +
Sbjct: 553 LSLMATLGFTTLVIQHGFMGSLFGIENTGPLLAFLPVVTIGLLFGLAIDYELFLMTRVHE 612

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
               Y+ +      I   I E+    V  ++  F   +       S I S  I + FG++
Sbjct: 613 E---YSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFVFQDDSAIKSMGIALGFGVL 669

Query: 807 VAASSSIFIAAPILLFIYDW 826
             A        P L  ++  
Sbjct: 670 FDAFVVRMTLIPALTKLFGK 689


>gi|148557841|ref|YP_001257758.1| putative multidrug efflux protein [Brucella ovis ATCC 25840]
 gi|148369126|gb|ABQ61998.1| putative multidrug efflux protein [Brucella ovis ATCC 25840]
          Length = 1026

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 157/605 (25%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISPRSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 89/247 (36%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRVPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        +  +  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMATFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPV 1002

Query: 819  ILLFIYD 825
            I + I  
Sbjct: 1003 IFVEIDR 1009


>gi|328542745|ref|YP_004302854.1| acriflavin resistance (Multidrug efflux transporter) protein
           [polymorphum gilvum SL003B-26A1]
 gi|326412491|gb|ADZ69554.1| Probable acriflavin resistance (Multidrug efflux transporter)
           protein [Polymorphum gilvum SL003B-26A1]
          Length = 1049

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/516 (11%), Positives = 148/516 (28%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   +I   GL       + +      P                         
Sbjct: 26  RRPVLAFVFNMLIVVAGLAAIFGVEIRELPDVDRPVIT--------------VRTDYPAA 71

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   S +        +    ++++T+ F+D       A  +   L  
Sbjct: 72  AAETIDREVTGIIEGAASRVSGVKSISSTSSFGESRVTIEFSDGVDLNAAASDLRDALGR 131

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + +++      + ++       ++V      D       + ++ +  +  D +       
Sbjct: 132 ITNQMPDGADPSRIIKADANSQAVVRLGLTSD--RMSVEDMTVLVEDEIADTLAAVPGVA 189

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D +++  L  T   ++                 R          
Sbjct: 190 DVQVYGDRKKIFRIDIDQAKMASLNLTVGDVANALSSMAFDSPAGSLTSRNQDLIVRATA 249

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++       + +N                                 ++     +     
Sbjct: 250 ALDTPEAFESMIVNRRA------------------------RLGDFASVTMGPDLGQSQL 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          AQ +     +    +AA ++          V   +     G+   
Sbjct: 286 RANGQTGIGLGIVRAAQSNTLEISQGVRAVAARIQETLPEGMTIEVTSDDATFINGAIHE 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   +VL+++F+ +   +  ++   S+ + +I TLA + L G ++ + ++  +V
Sbjct: 346 VEIALAISVSVVLLIIFVFLWDWRATIIPGVSMPVALIGTLAAIYLAGFSINILTLLALV 405

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  +  T +   V L F  
Sbjct: 406 LATGLVVDDAIVVLENIVRRRNEGIGPRAAAVLGTDEVFFAVIATTATLVAVFVPLSFLP 465

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F   + +++ +S   A+S+   +   I
Sbjct: 466 GQTGGLFREFGFVLAIAVFLSSLVALSLCPMLASRI 501



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 76/204 (37%), Gaps = 7/204 (3%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            ++    +++  ++ +  V  +I E +P                  I +  + + IS   
Sbjct: 297 IVRAAQSNTLEISQGVRAVAARIQETLPEGMTIEVTSDDATFINGAIHEVEIALAISVSV 356

Query: 680 MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           +L+ I++    W   +    ++ + +  TL    L G   N+  + A++   G  V+D +
Sbjct: 357 VLLIIFVFLWDWRATIIPGVSMPVALIGTLAAIYLAGFSINILTLLALVLATGLVVDDAI 416

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           VV + +   ++     I  R       +E     + T+       +P++   G       
Sbjct: 417 VVLENI---VRRRNEGIGPRAAAVLGTDEVFFAVIATTATLVAVFVPLSFLPGQTGGLFR 473

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
            F   +A  + +++  ++ +   +
Sbjct: 474 EFGFVLAIAVFLSSLVALSLCPML 497



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 65/156 (41%), Gaps = 7/156 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + + +L+ +  +F+ +  A+  + T+ L +   +    + G   N+ +   ++ L+G 
Sbjct: 869  GFAIVIILLVLAAQFESFVSAVIIMATVPLGLACAVFAMLMTGTTLNVYSQIGLVMLVGI 928

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ +      +L     + R+ I+ + N  L   + T +   +  +P+ +    
Sbjct: 929  MAKNGILIVEFAN---QLRDRGQTVREAIENAANIRLRPVMMTMICTIVGGVPLILASGA 985

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G     +    +  G+ +A  S++F+     L +  
Sbjct: 986  GAEARIALGWVIVGGLGLATLSTLFLTPVAYLLLGR 1021


>gi|242278988|ref|YP_002991117.1| acriflavin resistance protein [Desulfovibrio salexigens DSM 2638]
 gi|242121882|gb|ACS79578.1| acriflavin resistance protein [Desulfovibrio salexigens DSM 2638]
          Length = 1027

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/581 (11%), Positives = 162/581 (27%), Gaps = 38/581 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   +   G++        +  +   P+            L+      L   
Sbjct: 9   KRPVMTSLVVIGMVFFGIV-----GYLRLPVSYLPAVEFPT-------LQ--VTATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  +             Q Q +ITL F   R  +  A      +  
Sbjct: 55  SASTMASSVATPLEKEFTSTPGLRSMSSVNSQGQTQITLQFDLDRDIDGAASDTQAAISR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  L  D  +             VL    I        + +        D I +     
Sbjct: 115 ASGNLPTDLPQQPYYEKVNPADDPVLY-MAIWSESMPLYKVNEYTTTFLTDTISMVNGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +        + +    +P +L         +       N  +           D+     
Sbjct: 174 KVEVYGESKLAVRVRVNPEKLAARGMNIDDIRQAIAEQNVKEPVGTL------DNKMQSV 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   ++                      + F+    R         +   +     G 
Sbjct: 228 TIESTGQLKNADEFMP--------------MIFESEEGRTVRLSEVGEVINSVQSDKSGS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +   +     ET   +   +R          V          +   
Sbjct: 274 WIDGKRGIVIAIKKQPGSNTIQVCETIREMLPTIRNQIPAGIQMKVLYDRSEPIKEAVDD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +    V+ V+F  +      ++A  ++ ++++ T A++ +L  +L   S+  + 
Sbjct: 334 VQVTLLLAIFFVICVIFFFLKNLSATIIASVAVPVSIVFTFAVMYVLDYSLDTLSLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  +++ E I       +  + +   G  +   TI    ++  +  + L +  
Sbjct: 394 LSVGFVVDDAVVMIENIVRHLEMGKKPYQAALDGAKQITFTIISMTLSLAVVFIPLMYMS 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  +  FA+T+ ++IL S   ++++   +   I++     S           + D  
Sbjct: 454 GIIGRILHEFAMTITVAILASGVVSLTMTPMLASRILKPGSKLSESDPIFDFLLRMYDRS 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
               MR R W +G + L  + +I         +        
Sbjct: 514 LHFVMRHRAWTMGAAGLILLATIHFFMVIPKGFLPTDDMSY 554



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/351 (11%), Positives = 106/351 (30%), Gaps = 12/351 (3%)

Query: 484  AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLIPDCIAIQ 541
              +    ++     + M     +       + +     +K              D     
Sbjct: 663  PDQQELFSIAPKFEMQMRQIPFLTGLTSDLLDQNPELWVKIDRDKASYYGVTAHDIENTL 722

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSNLES 600
                    V      +     +L     N         + +       + L  + +  E 
Sbjct: 723  NSAYSERKVSTIYGDTDQYWVILQVMPYNQRDPRDLMKLHVANKNGDLIRLDNLANFEEK 782

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                 ++         +   +      S A   + E+    + + V  +     +     
Sbjct: 783  PGPMQVNHTGMLPSVTYSFNIAPGYSLSDATAAINELALNNLPDTVVSNFEGTADEFQKS 842

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
            +S       ++ + I  I M++ I +   +   +  I+ L       L    +FG + +L
Sbjct: 843  MSSVYF---LLAIAIFVIFMILGI-LYESYIHPITIISGLPSAAIGGLLTLTIFGKDLDL 898

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
              +  V+ LIG    + ++V D   +       ++S  +   K   E     + T++AA 
Sbjct: 899  FGIVGVIMLIGIVKKNAIMVVDFALE--AEEKDNLSPAEAAMKGSLERFRPIMMTTIAAI 956

Query: 781  ISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               +P+A+    G        + +  G++++   ++++      ++  ++ 
Sbjct: 957  AGAMPIALGLGAGAQARQPMGLAIVGGLILSQVVTLYLTPVFYTYMDSYQK 1007



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/133 (11%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               + A   + + I  T     +     +  ++ A+   +G+ V+D VV+ + +   ++
Sbjct: 356 LSATIIASVAVPVSIVFTFAVMYVLDYSLDTLSLLALTLSVGFVVDDAVVMIENI---VR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                            +     +  +++  +  +P+       G ++  FA+ +   I+
Sbjct: 413 HLEMGKKPYQAALDGAKQITFTIISMTLSLAVVFIPLMYMSGIIGRILHEFAMTITVAIL 472

Query: 807 VAASSSIFIAAPI 819
            +   S+ +   +
Sbjct: 473 ASGVVSLTMTPML 485



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 60/535 (11%), Positives = 154/535 (28%), Gaps = 59/535 (11%)

Query: 1    MRNNPWLVILYSMICCIGLLIALP---NFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
            MR+  W +    +I    +   +     FLP   +                  +G S+  
Sbjct: 518  MRHRAWTMGAAGLILLATIHFFMVIPKGFLPTDDMSYCQGFAQAK--------QGISY-- 567

Query: 58   LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS--FADSRFKENIADKV 115
                  + +   ++     L      + +   +   IQN+  +         ++  AD+V
Sbjct: 568  ------NAMKDHIKKLEPILMDDPNIKSVITVAGAPIQNQGYVFPMLTPPGDRDMTADQV 621

Query: 116  TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                      +     +  ++   +    I L+  +   +  + ++   +     I    
Sbjct: 622  ------ARQLMYKLNNEPGIMVWIQNPPMIRLTAKSTKNLYQYTVQAPDQQELFSIAPKF 675

Query: 176  ISESTIQRLGSH------RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
              +       +           +L  + D  +      T   +        + +K     
Sbjct: 676  EMQMRQIPFLTGLTSDLLDQNPELWVKIDRDKASYYGVTAHDIENTLNSAYSERKVSTIY 735

Query: 230  VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                +                   +      ++ +  + ++ +                N
Sbjct: 736  GDTDQY-----------------WVILQVMPYNQRDPRDLMKLHVANKNGDLIRLDNLAN 778

Query: 290  IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
              +    +        P +     +    I+  +++  A      L   +LP  +    E
Sbjct: 779  FEEKPGPMQVNHTGMLPSV-----TYSFNIAPGYSLSDATAAINELALNNLPDTVVSNFE 833

Query: 350  RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                    S S      AI   ++ ++L ++       +     +    I  L  L++ G
Sbjct: 834  GTADEFQKSMSSVYFLLAIAIFVIFMILGILYESYIHPITIISGLPSAAIGGLLTLTIFG 893

Query: 410  ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNI 468
              L L  I G+++ IG+   + I+V +   E   K+  S   +   G    +  I  + I
Sbjct: 894  KDLDLFGIVGVIMLIGIVKKNAIMVVDFALEAEEKDNLSPAEAAMKGSLERFRPIMMTTI 953

Query: 469  TALIATVVL---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             A+   + +      G  A +   + +   +++S    + +      ++  Y+K 
Sbjct: 954  AAIAGAMPIALGLGAGAQARQPMGLAIVGGLILSQVVTLYLTPVFYTYMDSYQKW 1008


>gi|304389426|ref|ZP_07371389.1| protein-export membrane protein SecD [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304327236|gb|EFL94471.1| protein-export membrane protein SecD [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 721

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 116/719 (16%), Positives = 229/719 (31%), Gaps = 98/719 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL--- 58
           +N     +++  +  + L   L      S     P         L +DL GG+ L+L   
Sbjct: 7   KNKALRTLIFFAVIVVALAGTLVGSTIFSNGSYAP--------KLAIDLEGGTQLILTPK 58

Query: 59  --EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADS---------- 105
             E       +  ++   + +R  +   G+    + R  Q  I++    +          
Sbjct: 59  NTEAKAKAISDADIEQAIEVIRQRIDASGVAEAEIARNGQENISVGIPGNPSEETLALIQ 118

Query: 106 ---------------------RFKENIADKVTLFLQGVNSKLNV-----DPKKNLLVTTT 139
                                   + +  ++T                   +    V   
Sbjct: 119 QSAVMRFRTVLLSAPGNATNNEDPQALLGQLTGAAAPAGQGQPAAGETGGQQTQTTVGKG 178

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              ++I  S           +  S +            +              +P ++  
Sbjct: 179 NNTVTIPPSAPTEKGKTQSLVLNSTDPSATPAPTSNPGKPAPTPAAKQHPSAAIPFDELM 238

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKK----------------------GFMFGVRFLRDSD 237
            +  +   T A  S       +                                     +
Sbjct: 239 KQAEKYPDTPAGESKVINDRKHITVRDMFIFNHLDCTDPASLKGGSLDDPKKNLVACSKE 298

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTH-----KPVVDISFDEMGARRFFEV------- 285
           G +  +     +SG  L  A++            +  V +  D  GA++F  V       
Sbjct: 299 GYEKYILGPEVLSGTDLVSASSGMGTNQQGNATGQWEVALKLDADGAKKFDAVAKVLYPN 358

Query: 286 -----TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
                 R+      A+VLD  V++AP +N     G A ISG+ T E++  LA  L+ GSL
Sbjct: 359 QTQGSNRNPDNNRFAIVLDSLVVSAPGVNAPAFGGSASISGSLTRESSATLANQLQFGSL 418

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P+      ++++ A LG + +  G  A + GL+L+VL+++  Y     +A  S+ L   +
Sbjct: 419 PLNFEQQSKQSISATLGGEHLKVGFYAAIVGLILVVLYLLQQYHALAGLATASLLLAGGI 478

Query: 401 TLALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
               +++L  ++    +L  + G+++ +G+ +DS I+  ERIR+E R  + +  +++ G+
Sbjct: 479 VYLAVAILSWSMGYRLSLAGVVGLIVAVGVTMDSFIIYFERIRDEVRDGKPLATAVETGW 538

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           +RA  TI  S+I  ++A VVL+    G V+GFA T+GL+ L+ +         MM  +I+
Sbjct: 539 NRAKRTIVVSDIVNIVAAVVLYVLAVGGVQGFAFTLGLTTLVDLGIIFLFTHPMMSLLIK 598

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
            +               +       +MR+                           +  +
Sbjct: 599 TRYFGEGRKFSGLDPLHLGASSDRIYMRSTATATSS-----RKKKSAQKVASPTISLARQ 653

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               L        D +   S                                   ++  
Sbjct: 654 KAGLLQTDEEDTADTAATPSANLESDTPATESAAETSSTESQSETAKSDESGDTTSKDE 712



 Score =  104 bits (258), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 70/184 (38%), Gaps = 8/184 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD---I 704
               Q+ + +   +  E ++ G    I+  I +++Y+  ++     L A  +L+L    +
Sbjct: 421 NFEQQSKQSISATLGGEHLKVGFYAAIVGLILVVLYLLQQYHALAGL-ATASLLLAGGIV 479

Query: 705 TKTLGFFAL-FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +   +   G   +L  V  ++  +G +++  ++ ++R+R  ++           ++ 
Sbjct: 480 YLAVAILSWSMGYRLSLAGVVGLIVAVGVTMDSFIIYFERIRDEVRD---GKPLATAVET 536

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             N      V + +   ++ + + V     +  FA  +    +V          P++  +
Sbjct: 537 GWNRAKRTIVVSDIVNIVAAVVLYVLAVGGVQGFAFTLGLTTLVDLGIIFLFTHPMMSLL 596

Query: 824 YDWR 827
              R
Sbjct: 597 IKTR 600


>gi|149378242|ref|ZP_01895955.1| Acriflavin resistance protein [Marinobacter algicola DG893]
 gi|149357469|gb|EDM45978.1| Acriflavin resistance protein [Marinobacter algicola DG893]
          Length = 1027

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 62/512 (12%), Positives = 152/512 (29%), Gaps = 40/512 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  +G   A+     +  + ++P                         
Sbjct: 9   QRPVLATVVSLLILLLGARAAM-----EMEIRQYPELESTTVT---------VTTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+     +  +          +  Q Q+ I      +        ++   +  
Sbjct: 55  GSELVKGFITTPLQQAIAEASGIDYLTSTSSQGQSTIEAKMVLNYDANAALAEIQAKVAS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D +  ++ +TT    +++      D++     + +  + R    ++       
Sbjct: 115 QRNVLPADAQDPVITSTTGDSTALMYIAFYSDEL--EVPQITDYLTRVVQPKLQALSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    L    DP RL  +  T  ++    +  N          ++ +       
Sbjct: 173 KADLLGRQ-FALRVWLDPERLSAVDMTPQEVVDVLLRNNYQAAVGNTKGKYTK------- 224

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                           T++ D    +   D+   E             +           
Sbjct: 225 -------------ISMTSDTDVGDPEQFKDLVVKESDGSLIRLRDIARVELGSETYDQLA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +     +        + +         +          S   
Sbjct: 272 LYKGQPATYVAIELSPGANPLTVAKLVKDELPGIESQLPSGMNVRLAYDASDFIDSSIKE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL+V+F+ +   +  +V   ++ L+++     + ++G +L L ++  +V
Sbjct: 332 VIQTLLEALVIVLVVVFICLGSVRAAVVPSVAVPLSLVGGAFFMLVMGFSLNLLTLLSMV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I++ E +     + +S F +   G     + I     T +     + F G
Sbjct: 392 LAIGLVVDDAIIMVENVHRHIEEGESRFNAALNGAREMATPIIAMTTTLVAVYAPIGFMG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAM 510
              G     FA T+  +++IS   A+++   +
Sbjct: 452 GLVGSLFTEFAFTLAGTVVISGIVALTLSPML 483



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 88/271 (32%), Gaps = 11/271 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              +                   +   +   V LS V S  + ++    +  N        
Sbjct: 742  YQVIPQVDQDFRLDEQALNDYYIRADSGSLVPLSSVISFQKDVEPSQRTQFNQLNSLTLQ 801

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +        A   +     +   +         +     + S  ++        +S +
Sbjct: 802  GVVTPGVTVGDAMAFMENAAAESFPQGFSFDYTGESRQFANQGSALVVT-----FFLSLL 856

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ W      + ++ + +   + F  L     N+     ++TLIG    + 
Sbjct: 857  VIYLVLAAQFESWRDPFIILVSVPMSVAGAMAFIVLGFATMNIYTQVGLITLIGVVSKNG 916

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ +    N       ++ R+ + ++    L   V TS+A   +++P+ +    G    
Sbjct: 917  ILIVE--FANQLQVDKGLNKREAVVEAAAIRLRPIVMTSLALIFAMVPLLIAVGPGAESR 974

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +  + ++ G+ +    +IF+     + +  
Sbjct: 975  FAIGLTISAGLGIGTLFTIFVLPAFYILLGR 1005



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/134 (14%), Positives = 49/134 (36%), Gaps = 6/134 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               A+     + L +     F  + G   NL  + +++  IG  V+D +++ + +    
Sbjct: 353 SVRAAVVPSVAVPLSLVGGAFFMLVMGFSLNLLTLLSMVLAIGLVVDDAIIMVENVH--- 409

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      S  +       E     +  +        P+   G   GS+   FA  +A  +
Sbjct: 410 RHIEEGESRFNAALNGAREMATPIIAMTTTLVAVYAPIGFMGGLVGSLFTEFAFTLAGTV 469

Query: 806 VVAASSSIFIAAPI 819
           V++   ++ ++  +
Sbjct: 470 VISGIVALTLSPML 483


>gi|158315073|ref|YP_001507581.1| MMPL domain-containing protein [Frankia sp. EAN1pec]
 gi|158110478|gb|ABW12675.1| MMPL domain protein [Frankia sp. EAN1pec]
          Length = 832

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 85/620 (13%), Positives = 173/620 (27%), Gaps = 66/620 (10%)

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
           P         G     +        P    +        V      +         +++ 
Sbjct: 174 PENGTLSTGPGRAGVEQTVAALGQAPQVASVTDPFTADGVAEDGQTAYAQVTYSVQSVDV 233

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
                  L   + P +   +     G  +        T  I   +  +VL +        
Sbjct: 234 TEEAREGLFHAAAPAEAAGLAVEYGGTAMEEVPEQSATEIIGLLVAAVVLLITFGSLVAA 293

Query: 388 LVADFSIFLNVILTLALLSLLGATLTL---PSIAGIVLGIGLAVDSNILVNERIREENRK 444
            +   +  L VI  +A + +      L    S   ++LG+ + +D  + V  R R E   
Sbjct: 294 GLPLLTAALGVIFGMAGIQIATGFFDLGSSTSTLALMLGLAVGIDYALFVTSRYRHEISL 353

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
                 +       A S +  + +T +IA   L   G   +    +    ++ I++  A+
Sbjct: 354 GLEGEEAAGRAVGTAGSAVVFAGLTVVIALAALAVVGIPFLTSMGLAAAGTVAIAVVIAL 413

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL- 563
           +++ AM  F         +              +A+    AR           +  + L 
Sbjct: 414 TMLPAMFGFAGGRIAGGRVAGLRGRDPEDSGPRVAMGERWARLVVRRRVPALLLGVLVLG 473

Query: 564 ----------------------------LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                                              +G  F G + L V          V 
Sbjct: 474 LVALPATDLRLGMPDDSTAAEDTTQRKAYDQLAEGFGPGFNGPLLLVVDVAGNPAPQGVV 533

Query: 596 S-------NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI--- 645
                    L  +        N  G+   L  +        A   ++  ++   +     
Sbjct: 534 ERVRQAAAALPGVVTVTAPVFNQAGDTATLSVVPATGPSDKATEDLVHALRDSASAATAV 593

Query: 646 -VPLSTIQNTEIVGPKISRELIRKGI--VGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
               S + ++  +   +S  L    +  + V++    +L+ +  R      L A    +L
Sbjct: 594 GGAASYVTSSTAMNIDVSETLSDALLPYLAVVVGLAFVLLALVFR-SILVPLKATVGFLL 652

Query: 703 DITKTLGF----------FALFGIEFNLTA-----VAAVLTLIGYSVNDKVVVYDRMRKN 747
            +  T G             L G++          +  +  L G +++ +V +  RMR+ 
Sbjct: 653 SVVATFGAVVAVFQWGWMMDLLGVDSTGPIVSFLPIFLIGVLFGLAMDYEVFLVTRMREE 712

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI-GSFAIPMAFGIV 806
              Y    +  D +         R V  +    ISV    +     I  S    +AFG++
Sbjct: 713 ---YVHGQAPDDAVVLGFRH-GARVVTAAAIIMISVFAGFILAPEPIIQSLGFALAFGVL 768

Query: 807 VAASSSIFIAAPILLFIYDW 826
           V A        P ++ +   
Sbjct: 769 VDAFVIRMTLVPAVMSLLGR 788


>gi|220921659|ref|YP_002496960.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
 gi|219946265|gb|ACL56657.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
          Length = 1037

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/519 (12%), Positives = 153/519 (29%), Gaps = 35/519 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                + RFP+                  +         +   +  + ++  + +K    
Sbjct: 31  FRSLPITRFPNIDVPIV---------SVSINQPGAAPSELQTQVTKWVEDAVAGVKGVKH 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++ +  +  T+ F      +   + V   +  +   L    ++ ++       + I+
Sbjct: 82  ITSAITEGNSATTIEFRLEVNTDRAVNDVKDAIAKIRMNLPRTIEEPIINRVEIAGLPIM 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   +   +     + S  +      QI              +  ++     P RL  L 
Sbjct: 142 VYGASAPAMTPE--DLSWFVDDVVARQIQGLRGVGGVERLGGVAREVRVTLKPDRLLALG 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A ++    L +    G    +     S            ++   +            
Sbjct: 200 ITAADVNRQLRLTSADMAGGRAELGGQEQSIRTLAASASLDTLAATSIVLP--------- 250

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                      G R+        +            L    +     S  +  S     E
Sbjct: 251 -----------GGRKVRLDELATLSDGAEEPRTFARLNGEPVVAFAISRASGASDASVAE 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LR     ++ ++++        G+           AGL ++V+F+ +   + 
Sbjct: 300 IVAKKIDELRTAYPNVRFDLIDTSVTNTI-GNYHSAMHGLMEGAGLAVLVVFLFLRDWRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+A  ++ L+V  T   +S +G +L   S+  I L  G+ VD  I+  E I    R  +
Sbjct: 359 TLIAAVALPLSVFPTFWAMSAMGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHIRLGK 418

Query: 447 SVFCSL---DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
           S + +          A   I  + +        +    G   + F +T+  ++ +S+  A
Sbjct: 419 SPYRAALEGADEIGLAVIAITATLVAIFAPVSFMGGIAGQYFKQFGLTIAAAVFMSLLVA 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             I   M  + +R          P+ R +      +++ 
Sbjct: 479 RLITPMMAAYFMRDHGHHEETPGPVMRTYTRVVAWSVRH 517



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 80/224 (35%), Gaps = 7/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V L+     S A    +       T       +   +    +I  E+     + +
Sbjct: 789  DRAVRVALEANLQGSDALAEAIAQALATPTARNLPPGVTIRQTGDAEIMGEVFEGFAMAM 848

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +L  + + F  +   L  + +L L I   +    +F    ++  V  +L L+G 
Sbjct: 849  GAGLMMVLGVLILLFGSFLQPLTILFSLPLSIGGAILGLLIFNRPISMPVVIGILMLMGV 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAVEEMA---RGVDRITAIVDAGRKRARPIVMTTIAMAAGMVPSAMALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG      AI +  G++V+   S+     I + + D      R+
Sbjct: 966  GGEFRSPMAIAVISGLIVSTLLSLLFVPAIFVLMDDLSRLFGRL 1009



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 72/249 (28%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +   R V L  + +  +  +      +            +       +   ++    
Sbjct: 246 SIVLPGGRKVRLDELATLSDGAEEPRTFARLNGEPVVAFAISRASGASDASVAEIVAKKI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++    P       +                 +  + +A+L+       W   L A   
Sbjct: 306 DELRTAYPNVRFDLIDTSVTNTIGNYHSAMHGLMEGAGLAVLVVFLFLRDWRATLIAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T    +  G   N  ++ A+  + G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSVFPTFWAMSAMGFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHIRLGKSPYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              +  +E     +  +        P++  G   G     F + +A  + ++   +  I 
Sbjct: 423 AALEGADEIGLAVIAITATLVAIFAPVSFMGGIAGQYFKQFGLTIAAAVFMSLLVARLIT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PMMAAYFMR 491



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 55/507 (10%), Positives = 138/507 (27%), Gaps = 30/507 (5%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
            +++  + L                P       + L L+L  G+ L   +   D +   +
Sbjct: 520 VTLVVGLALFTGSILSTRLLPAGFLPKEDAARTL-LVLELPPGARLDDTIAVSDRIARAI 578

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
           +   +    F+                +T++      +      V   +  +        
Sbjct: 579 RSLPEVSSVFVDGGRQLPGKKEIRLATLTINLTPKSARTRKQADVEAAIMELLRDEPD-- 636

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
            +   +    +    ++       V++        +  +   ++    + +  + +  + 
Sbjct: 637 LRYWSLREGGQRDFALIVAGPDTAVVTD-------VAERMQREVAAIPNLVNVMSTAPLD 689

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
                 +    +   LG +       V             +F          V+  VE  
Sbjct: 690 RTEVRIRPKPAVAADLGVSTDTIAETVRVGTIGDIGANLAKFNATDRQIPIRVQLPVETR 749

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
           G                    +                +I          R   A  +  
Sbjct: 750 GQVETL-------------ESLKVPTKSGAAVPLTAVADISLGRGPTAIDRYDRAVRVAL 796

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                 +        E      A   A +LP  + I +  +          +        
Sbjct: 797 EANLQGSDAL----AEAIAQALATPTARNLPPGVTIRQTGDAEIMGEVFEGFAMAMGAGL 852

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            +VL VL ++       L   FS+ L++   +  L +    +++P + GI++ +G+   +
Sbjct: 853 MMVLGVLILLFGSFLQPLTILFSLPLSIGGAILGLLIFNRPISMPVVIGILMLMGVVTKN 912

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV---LFFFGGGAVRG 487
            I++ +   EE  +      ++     +    I  + I      V        GG     
Sbjct: 913 AIMLVDFAVEEMARGVDRITAIVDAGRKRARPIVMTTIAMAAGMVPSAMALGIGGEFRSP 972

Query: 488 FAITMGLSILISMFTAISIVRAMMIFI 514
            AI +   +++S   ++  V A+ + +
Sbjct: 973 MAIAVISGLIVSTLLSLLFVPAIFVLM 999


>gi|120556403|ref|YP_960754.1| acriflavin resistance protein [Marinobacter aquaeolei VT8]
 gi|120326252|gb|ABM20567.1| acriflavin resistance protein [Marinobacter aquaeolei VT8]
          Length = 1026

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 59/511 (11%), Positives = 150/511 (29%), Gaps = 40/511 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G   A+     +  + ++P                          
Sbjct: 10  RPVLATVVSLLILLLGARAAM-----EMEIRQYPKLESTTVT---------VTTAYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D + GF+     +  +          +  Q  + I      +    +   ++   +   
Sbjct: 56  SDLIKGFITTPLQQAIAEASGIDYLTSTSSQSVSTIQAKMVLNYDANDALAEIQAKVASQ 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  + +  ++ +TT  + +++       +      + +  + R    ++       +
Sbjct: 116 RNVLPAEAEDPVITSTTGDDTALMYIAFYSTE--MDVPQITDYLTRVVQPKLQALSGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    L    DP RL  +  T  +++      N          ++          
Sbjct: 174 AQLLGR-TFALRVWLDPERLAAVDLTPVEVAAKLRANNYQAAVGQTRGKYTE-------- 224

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          T++ D    +   ++   + G           +           +
Sbjct: 225 ------------VSLTSDTDIADPEAFRNLVVKQSGGTLIRLQDIARVELGSQNYDQLAL 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +              + +         +          S +  
Sbjct: 273 YKGQPATYVAIEMAPGANPLTVAGLVKDELPDIESQLPSGLNVRLAYDASDFIDDSINEV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +VL+V+F+ +   +  +V   ++ L++I    ++ + G +L L ++  +VL
Sbjct: 333 IRTLIEAMIIVLVVVFLCLGSVRASVVPSVAVPLSLIGGAFIMLMFGFSLNLLTLLSMVL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I++ E +     + +S F +   G     + I     T +     + F G 
Sbjct: 393 AIGLVVDDAIIMVENVHRHIEQGESRFEAAINGAREMATPIIAMTTTLVAVYAPIGFMGG 452

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAM 510
             G     FA T+  +++IS   A+++   +
Sbjct: 453 LVGSLFTEFAFTLAGTVVISGIVALTLSPML 483



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/322 (10%), Positives = 100/322 (31%), Gaps = 9/322 (2%)

Query: 511  MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
             +F+ +                 + D         +     +S  +         ++ + 
Sbjct: 686  FMFLKKSINFDKPSTRINVDRDRVADLGLSMQDVGQSLASMLSGGYINRFNMEGRSYQVI 745

Query: 571  YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
              +D +       L +  +          S  +             F           V 
Sbjct: 746  PQVDDQFRASREALDDYYIRAGNGELVPLSSVVSFTEEVEPSNRTQFNQLNSLTLEGVVM 805

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIR 687
                     + + +       Q         SR+L  +G   +V   +S + + + +  +
Sbjct: 806  PGVAAGTAMEFMEQTAGEVFPQGFSFDYTGESRQLATQGSALVVTFFLSLLVIYLVLAAQ 865

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            F+ W   +  + ++ + +   + F  L     N+     ++TLIG    + +++ +    
Sbjct: 866  FESWRDPIIILVSVPMSVAGAMAFIVLGFASMNIYTQVGLITLIGVVSKNGILIVE--FA 923

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
            N       ++  + + ++    L   + TS+A   +++P+ +    G     +  + ++ 
Sbjct: 924  NQLQKEQGLNKVEAVIEAAAIRLRPIIMTSLALIFAMVPLLIAVGPGAESRFAIGLTISA 983

Query: 804  GIVVAASSSIFIAAPILLFIYD 825
            G+ +    ++F+     + +  
Sbjct: 984  GLGIGTLFTVFVLPAFYILLAR 1005



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 69/191 (36%), Gaps = 9/191 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              L  ++ ++   + +    +          E+IR  I  +II  + + + +       
Sbjct: 299 KDELPDIESQLPSGLNVRLAYDASDFIDDSINEVIRTLIEAMIIVLVVVFLCLG---SVR 355

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            ++     + L +        +FG   NL  + +++  IG  V+D +++ + +    +  
Sbjct: 356 ASVVPSVAVPLSLIGGAFIMLMFGFSLNLLTLLSMVLAIGLVVDDAIIMVENVH---RHI 412

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVA 808
               S  +       E     +  +        P+   G   GS+   FA  +A  +V++
Sbjct: 413 EQGESRFEAAINGAREMATPIIAMTTTLVAVYAPIGFMGGLVGSLFTEFAFTLAGTVVIS 472

Query: 809 ASSSIFIAAPI 819
              ++ ++  +
Sbjct: 473 GIVALTLSPML 483


>gi|330684026|gb|EGG95784.1| MMPL family protein [Staphylococcus epidermidis VCU121]
          Length = 896

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 91/664 (13%), Positives = 201/664 (30%), Gaps = 63/664 (9%)

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
              P       M G++ L  +D          E + + +   +   D  T K        
Sbjct: 36  ISAPKFDSNITMNGLKSLDTNDKMSKEFHQDSEKASMKIVIHSDKKDGITDKDTKKDIEK 95

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
            +   +  +    N+  P             +        +       T         + 
Sbjct: 96  ALDNIKQDDDYVQNVSNPYETNQVNDDKDTAIATVNYVVNQ-------TSLKDSSKKIID 148

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           R        + V+        G       +  +      I+L +         +   S  
Sbjct: 149 REMKDVKDNHNVQIEQAQGGSGGSEPGGNSELVGIVTAFIILLITFGSLIAAGMPIVSAL 208

Query: 396 LNVILTLALLSLLGATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           + +  ++ +++LL     +P+      +++G+ + +D ++ +  R +E  +K      S+
Sbjct: 209 MGLGSSIGIIALLTNVFDIPNFTLTLAVMIGLAVGIDYSLFILFRYKEIRKKGTPPVESI 268

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
            +    A S +  + +T +IA   L   G   +        +S+L ++  A++++ A++ 
Sbjct: 269 ALAVGTAGSAVIFAGLTVMIAVCGLSLVGIDFLAVMGFASAISVLFAVLAALTLLPALIS 328

Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL--- 569
              +  K+K                  +           I ++ +I  I  +        
Sbjct: 329 VFHKRIKIKDKPEKSKDPKNHPWAKFVVGKPVLAIIISLIILIAAIIPISGMRLGMPDDS 388

Query: 570 -----------------NYGIDFKGGIQLGVLANR-------PVDLSVVRSNLESLQIGD 605
                            N+G  + G I + V             DL+ +R +L+ +   D
Sbjct: 389 LKPNDSSAHKAYNLVTDNFGAGYNGQIAMLVNTKDGGSKKDIESDLNSMRKDLKDMDNVD 448

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
              +    + N    +   P D         +V              +        S   
Sbjct: 449 TVEKPQLNDNNHYALISIIPEDGPNAQSTSNLVYDLRDYNKQAKEKYDFNTEVTGQSVIN 508

Query: 666 IRKG--------IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF------ 711
           I           +   +I  +A ++ +++       L A+   +L +  TLGF       
Sbjct: 509 IDMAEKLNNAIPVFAGVIVLLAFVLLVFVFRSILVPLKAVLGFVLSLMATLGFTTLVMQD 568

Query: 712 ----ALFGIEFNLT-----AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                LFG+E          V  +  L G +++ ++ +  R+ +    Y+ +      I 
Sbjct: 569 GFLGGLFGVENTGPLLAFLPVITIGLLFGLAIDYELFLMTRVHEE---YSKTGDNDHSIR 625

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             I E+    V  ++  F   +         I S  I +AFG++  A        P L  
Sbjct: 626 VGIKESGPVIVAAALIMFSVFIAFVFQDDMQIKSMGISLAFGVLFDAFVVRMTLIPALTK 685

Query: 823 IYDW 826
           ++  
Sbjct: 686 LFGK 689


>gi|83954964|ref|ZP_00963642.1| hypothetical protein NAS141_00795 [Sulfitobacter sp. NAS-14.1]
 gi|83840690|gb|EAP79862.1| hypothetical protein NAS141_00795 [Sulfitobacter sp. NAS-14.1]
          Length = 1026

 Score =  141 bits (354), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/643 (10%), Positives = 184/643 (28%), Gaps = 46/643 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   GL   +   + +      P                      E   
Sbjct: 19  RPIFGIVINLLILIAGLAALVAVDVREMPDVDQPVLS--------------VRTTYEGAV 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V+  +    ++  S L+       +     ++IT+  ++    +  A++    +   
Sbjct: 65  PATVDREVTQVLEDALSALEGLSYMESTSTTGSSRITIDLSEGTDVDVAANEAREIVSST 124

Query: 123 NSKLNVDP-KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              L  D      +  +     +I+      D  +    E +  +     D++   +   
Sbjct: 125 LRDLPDDIEDDPTVTKSDSNADAIIRLALMGDASLDALTELAEGV---VYDRLSTIDGIA 181

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         +     D   L     T   +S       +                    
Sbjct: 182 EVTLRGEQPNEFRVTLDMPALLSRGMTLFDVSDALAALRDDTPLGSLDS-----DAQTLA 236

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L      ++   +     + +                           +           
Sbjct: 237 LRVGNANVTVDTVGQIPIDANT-------------------RVSDVAFVRLLPEEDAVLT 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          + ++  +     E   +  A L++         V   +     GS + 
Sbjct: 278 RVNGQTAVGMDITRQSVGNTLSISEDVAVAVADLQSALPDGVRLFVTSDDGTFIRGSLTE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              + A+  G+V++V+F  +   +  ++   +I ++++ T+A + L G ++   S+  +V
Sbjct: 338 VMKSIALATGIVVVVIFAFLRSPRAVMIPAVTIPVSLVGTVAAIWLTGFSVNTISLLALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  G+ VD  I+V E I  + ++    F +   G +  +  +  +  T     + + F  
Sbjct: 398 LATGMVVDDAIVVIENIVRKRKQGMGAFAAAAAGTNEVFFAVISTTATLAAVFIPISFLP 457

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG    F   +  ++ +S  TA+++   +  F+   K        P      + D +
Sbjct: 458 GQAGGVFSEFGFVLAFAVTLSSITALTLAPVLAAFLDPGKSALEATAKPQGWAGRMFDTV 517

Query: 539 AIQFMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + +R     +        + +             + +G   +         +  + + 
Sbjct: 518 MDKAIRMPLVVLGAAGAFVIVAAGAAGTLPSAITPDEDRGFFLVQARGASDTTIDYLDTQ 577

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           ++ ++     +Q      +    +    G S      L+    
Sbjct: 578 VDQIEEILTPYQESGEVTSVQSIVGVGGGTSAFIIVRLDDWSN 620



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 86/247 (34%), Gaps = 7/247 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +  +    +S V       +   +  +        +   +   G++++ +  + +    
Sbjct: 251 QIPIDANTRVSDVAFVRLLPEEDAVLTRVNGQTAVGMDITRQSVGNTLSISEDVAVAVAD 310

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTL 700
           +   +P               R  + + +  + ++   +++ I          +    T+
Sbjct: 311 LQSALPDGVRLFVTSDDGTFIRGSLTEVMKSIALATGIVVVVIFAFLRSPRAVMIPAVTI 370

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L G   N  ++ A++   G  V+D +VV + +   ++     +     
Sbjct: 371 PVSLVGTVAAIWLTGFSVNTISLLALVLATGMVVDDAIVVIENI---VRKRKQGMGAFAA 427

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                NE     + T+       +P++      G V   F   +AF + +++ +++ +A 
Sbjct: 428 AAAGTNEVFFAVISTTATLAAVFIPISFLPGQAGGVFSEFGFVLAFAVTLSSITALTLAP 487

Query: 818 PILLFIY 824
            +  F+ 
Sbjct: 488 VLAAFLD 494



 Score = 42.4 bits (97), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                A+  + T+   +   L   +L G   N  +   ++ LIG    + +++ +      
Sbjct: 872  SIASAVVIMLTVPFGLAAALFAISLSGGSLNYYSQIGLVMLIGVMAKNGILIVEFAN--- 928

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +L          I  ++   +   + T ++     LP+ +    G     +    +  G+
Sbjct: 929  QLREAGQDIDSAIRDALRLRIRPVMMTMVSTVFGGLPLILTSGAGAEARIAVGWVIVGGL 988

Query: 806  VVAASSSIFIAAPILLFIYDW 826
              A   ++F+      ++  W
Sbjct: 989  GFATVFTLFLTPVFYRYVAVW 1009


>gi|294853413|ref|ZP_06794085.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella sp. NVSL
           07-0026]
 gi|294819068|gb|EFG36068.1| HAE1 family hydrophobic/amphiphilic exporter-1 [Brucella sp. NVSL
           07-0026]
          Length = 1026

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 157/605 (25%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASPVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 90/247 (36%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRVPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPV 1002

Query: 819  ILLFIYD 825
            I + I  
Sbjct: 1003 IFVEIDR 1009


>gi|225686578|ref|YP_002734550.1| putative multidrug efflux transporter protein [Brucella melitensis
           ATCC 23457]
 gi|256111266|ref|ZP_05452297.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella melitensis bv. 3 str. Ether]
 gi|256262281|ref|ZP_05464813.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
 gi|265992779|ref|ZP_06105336.1| RND family transporter [Brucella melitensis bv. 3 str. Ether]
 gi|225642683|gb|ACO02596.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella melitensis ATCC 23457]
 gi|262763649|gb|EEZ09681.1| RND family transporter [Brucella melitensis bv. 3 str. Ether]
 gi|263092008|gb|EEZ16305.1| RND family transporter [Brucella melitensis bv. 2 str. 63/9]
 gi|326410970|gb|ADZ68034.1| putative multidrug efflux transporter protein [Brucella melitensis
           M28]
 gi|326554261|gb|ADZ88900.1| putative multidrug efflux transporter protein [Brucella melitensis
           M5-90]
          Length = 1026

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 157/605 (25%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 91/247 (36%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            + A     + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRAPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPV 1002

Query: 819  ILLFIYD 825
            I + I  
Sbjct: 1003 IFVEIDR 1009


>gi|126649877|ref|ZP_01722113.1| cation efflux system [Bacillus sp. B14905]
 gi|126593596|gb|EAZ87541.1| cation efflux system [Bacillus sp. B14905]
          Length = 1017

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 91/684 (13%), Positives = 209/684 (30%), Gaps = 47/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + ++    +  +G +  L     +  +   P   P           G         
Sbjct: 9   KRPVFTIVTMLFVILLGGVSLL-----KIPITLIPELNPPI---------GVVVTSFPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               VN  +    +   + L        + ++  N I L F  S   E++   +   +  
Sbjct: 55  SPTEVNERVTKPLEATLATLPGIKKLQSTSQEGSNLIVLEFNWSTNLEDVQLDILQRID- 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D  K   +     +  I+      +         + +       ++  +E   
Sbjct: 114 -MTPLPNDSGKPSFLKFDPSQFPIIQLSLRAENENVDVRLLAED----LEKELRRTEGVA 168

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S +++ ++    D  +L +   T A +       N S               G+  
Sbjct: 169 SVNVSGKLIEEIQITLDEGKLVEKGLTQADIIQIVQANNVSLP-------------GDPV 215

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L  D   ++   ++  T+  D       V+      G                  V   R
Sbjct: 216 LTNDGKMLTTRIVSTLTSPEDIANLIVSVNPLT---GEALTVGNLGSVKRAEQPSVTTTR 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +  ++       +   + E    L  +L           +          + S 
Sbjct: 273 ANEHAAVLMSVIQESGANTAEVSKEFQQTLNDLLEKEQYRGITADILVDQGNYVDVAISN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +     + VLF+ +   K  ++   +I  +VI+T  L+     +L + ++  + 
Sbjct: 333 IGSSLILGGLFAMFVLFVFLRSIKSPIIIGIAIPYSVIVTFVLMFFADFSLNIMTLGALA 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIG+ VD+ I+V E I       +    +   G       I  S +T +   + + F  
Sbjct: 393 LGIGMLVDNAIVVIENIERHLGLGKDPITAAMEGTREVALAITASTLTTIAVFIPVMFIE 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+T+  S++ S+  A+++V  +   +++ K +   +    S+F+      
Sbjct: 453 GLIGQIFTEFALTISFSLIASLVVALTVVPMLASRLLKMKSINVYEQRSQSQFYKRYKSS 512

Query: 539 AIQFMRARF-WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV---- 593
            +  ++ R    +     F +    L            +G   + V   + V +S     
Sbjct: 513 IVWVLKHRMLILIFTVACFGLSLFGLTRIGTEFLPPTDEGFTTISVNLEKGVAVSETEKV 572

Query: 594 ---VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              +   L+  +  D+      G +    R Q  P  +    +++ +V ++ +    +  
Sbjct: 573 VRKIEERLKQEKDVDVYVSLIGGTQQSQSRGQTSPNQAEMYVKLVPLVDRERSIFEFVEE 632

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
           ++           EL         
Sbjct: 633 LEQELQGELGDKTELTFNVSTATG 656



 Score = 89.4 bits (219), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 95/241 (39%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++ ++ I +        ++   V    +     +   +   V K I       T Q   
Sbjct: 781  EDVATVSIEEGPISIRRSDQAAAVAFFVEYETKESLGGMSTKVDKAIESAHLSPTTQIVF 840

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                ++    I   ++ VI++ I + I +  +F+ + +    + T+ L I          
Sbjct: 841  SGDRELYDSAIDDMLLAVILAIILVYIVMAAQFESFKYPFVIMFTVPLMIIGVAIAMFAT 900

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                 +T+V  +L L+G  VN+ +V+ D +    +     +S  + I  +  + L   + 
Sbjct: 901  NTLIGVTSVIGILVLVGIVVNNGIVLVDYIN---QQKANGMSAYEAILLATQDRLRPILM 957

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++   + +LP+A+    G  +     I +  G+V +   +++I  PI+  + D   +  
Sbjct: 958  TALTTILGLLPLALGIGEGTEMNQPMGIAVIGGLVTSTLLTLYIV-PIVYSLVDKETRKM 1016

Query: 832  R 832
            R
Sbjct: 1017 R 1017



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 66/219 (30%), Gaps = 10/219 (4%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +++        V++     +      E     T       G  +   +   G   ++   
Sbjct: 283 VIQESGANTAEVSKEFQQTLNDLLEKEQYRGITADILVDQGNYVDVAISNIGSSLILGGL 342

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            AM +           +     +   +  T           N+  + A+   IG  V++ 
Sbjct: 343 FAMFVLFVFLRSIKSPIIIGIAIPYSVIVTFVLMFFADFSLNIMTLGALALGIGMLVDNA 402

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVI 794
           +VV + +    +             +   E       +++      +  M + G  G + 
Sbjct: 403 IVVIENI---ERHLGLGKDPITAAMEGTREVALAITASTLTTIAVFIPVMFIEGLIGQIF 459

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             FA+ ++F ++     S+ +A  ++  +     K   I
Sbjct: 460 TEFALTISFSLIA----SLVVALTVVPMLASRLLKMKSI 494


>gi|25028327|ref|NP_738381.1| preprotein translocase subunit SecD [Corynebacterium efficiens
           YS-314]
 gi|23493612|dbj|BAC18581.1| protein-export membrane protein secD [Corynebacterium efficiens
           YS-314]
          Length = 639

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 115/580 (19%), Positives = 209/580 (36%), Gaps = 65/580 (11%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             I   ++   G+                P         LG+DL+GG+ + L     +  
Sbjct: 33  RAIAIFVLILFGVYAL---VFFTGDRSATP--------KLGIDLQGGTRVTLVPQGQEPT 81

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR--FKENIADKVTLFLQGVNS 124
              L      L + +   G+   S+    N + ++         + +     L  + V  
Sbjct: 82  QDQLNQARVILENRVNGMGVTGASVVADGNTLVITVPGEDVAQAQALGQTSQLLFRPVGQ 141

Query: 125 KLNVDPKKN---------------LLVTTTEKE------ISIVLSQNNIDQVISHAIEQS 163
               D                   ++              ++V ++   ++    A E  
Sbjct: 142 AGMPDMTTLMPVLEDMANRWVEYGVITEDEANTALAEMHSAVVETEQAGEEPAETAGEAP 201

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
                   +     E+T +R     +L       DP+       +  + +  ++ P    
Sbjct: 202 TVTAEPMPEPANSIEATERRQEITEMLRTDRQSTDPTTQIA-ASSLMQCTPDEMDPIAGT 260

Query: 224 KGFMFGVRFLRDSDGNQYLV------------EDKVEISGIHLNGATA-------NFDPK 264
                 +     + G  Y++            ED   ++G  ++                
Sbjct: 261 DDPRLPLVACDRASGGVYILDPAPLLQGETDEEDGARLTGNEIDTDRPITGGFNSQTGQM 320

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQISGNF 323
                      E G+  +  +T + + + +A+ LD  V++APVI  A        I+G+F
Sbjct: 321 EINFAFKSGAGESGSATWAALTNEYLQQQIAITLDSEVISAPVIQSATPVGSATSITGDF 380

Query: 324 TIETAGILAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           T E A  LA  LR G+LP+               V   LG+ S+  G  A V G+VL+ +
Sbjct: 381 TQEEATELANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLQAGLIAGVVGIVLVAI 440

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNIL 433
           F+   Y  +G V+ F++     L    L LL    G +L L  IAG+++GIG   DS ++
Sbjct: 441 FVFAYYRVFGFVSLFTLVAAGALVYGSLILLGRWIGYSLDLAGIAGLIIGIGTTADSFVV 500

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
             ERI++E R+ +S   +    + RA  TI   N+  LI  V ++    G V+GFA T+G
Sbjct: 501 FYERIKDEVREGRSFRSAAPRAWERAKRTIVTGNMVTLIGAVAIYLLAVGEVKGFAFTLG 560

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L+ +  +     +   ++I   R        +N +SR + 
Sbjct: 561 LTTVFDILVTFLVTAPLVILASRKPVFAKPSVNGMSRVYR 600



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 75/219 (34%), Gaps = 10/219 (4%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +     Q   +     +                   T  V P +    ++ G++ 
Sbjct: 371 GSATSITGDFTQEEATELANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLQAGLIA 430

Query: 673 VIISAIAMLIYIWIRFKW-----YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            ++  + + I+++  ++       F L A   L+      LG     G   +L  +A ++
Sbjct: 431 GVVGIVLVAIFVFAYYRVFGFVSLFTLVAAGALVYGSLILLG--RWIGYSLDLAGIAGLI 488

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             IG + +  VV Y+R++  ++      SFR    ++        V  +M   I  + + 
Sbjct: 489 IGIGTTADSFVVFYERIKDEVRE---GRSFRSAAPRAWERAKRTIVTGNMVTLIGAVAIY 545

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +     +  FA  +    V     +  + AP+++     
Sbjct: 546 LLAVGEVKGFAFTLGLTTVFDILVTFLVTAPLVILASRK 584


>gi|83943581|ref|ZP_00956040.1| hypothetical protein EE36_01730 [Sulfitobacter sp. EE-36]
 gi|83845813|gb|EAP83691.1| hypothetical protein EE36_01730 [Sulfitobacter sp. EE-36]
          Length = 1026

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 68/643 (10%), Positives = 184/643 (28%), Gaps = 46/643 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + +++  +I   GL   +   + +      P                      E   
Sbjct: 19  RPIFGIVINLLILIAGLAALVAVDVREMPDVDQPVLS--------------VRTTYEGAV 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V+  +    ++  S L+       +     ++IT+  ++    +  A++    +   
Sbjct: 65  PATVDREVTQVLEDALSALEGLSYMESTSTTGSSRITIDLSEGTDVDVAANEAREIVSST 124

Query: 123 NSKLNVDP-KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              L  D      +  +     +I+      D  +    E +  +     D++   +   
Sbjct: 125 LRDLPDDIEDDPTVTKSDSNADAIIRLALMGDASLDALTELAEGV---VYDRLSTIDGIA 181

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         +     D   L     T   +S       +                    
Sbjct: 182 EVTLRGEQPNEFRVTLDMPALLSRGMTLFDVSDALAALRDDTPLGSLDS-----DAQTLA 236

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L      ++   +     + +                           +           
Sbjct: 237 LRVGNANVTVDTVGQIPIDANT-------------------RVSDVAFVRLLPEEDAVLT 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          + ++  +     E   +  A L++         V   +     GS + 
Sbjct: 278 RVNGQTAVGMDITRQSVGNTLSISEHVAVAVADLQSALPDGVRLFVTSDDGTFIRGSLTE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              + A+  G+V++V+F  +   +  ++   +I ++++ T+A + L G ++   S+  +V
Sbjct: 338 VMKSIALATGIVVVVIFAFLRSPRAVMIPAVTIPVSLVGTVAAIWLTGFSVNTISLLALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  G+ VD  I+V E I  + ++    F +   G +  +  +  +  T     + + F  
Sbjct: 398 LATGMVVDDAIVVIENIVRKRKQGMGAFAAAAAGTNEVFFAVISTTATLAAVFIPISFLP 457

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG    F   +  ++ +S  TA+++   +  F+   K        P      + D +
Sbjct: 458 GQAGGVFSEFGFVLAFAVTLSSITALTLAPVLAAFLDPGKSALEATAKPQGWAGRMFDTV 517

Query: 539 AIQFMRARFWGV-GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             + +R     +        + +             + +G   +         +  + + 
Sbjct: 518 MDKAIRMPLVVLGAAGAFVIVAAGAAGTLPSAITPDEDRGFFLVQARGASDTTIDYLDTQ 577

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           ++ ++     +Q      +    +    G S      L+    
Sbjct: 578 VDQVEEILTPYQESGEVTSVQSIVGVGGGTSAFIIVRLDDWSN 620



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 86/247 (34%), Gaps = 7/247 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +  +    +S V       +   +  +        +   +   G++++ +  + +    
Sbjct: 251 QIPIDANTRVSDVAFVRLLPEEDAVLTRVNGQTAVGMDITRQSVGNTLSISEHVAVAVAD 310

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTL 700
           +   +P               R  + + +  + ++   +++ I          +    T+
Sbjct: 311 LQSALPDGVRLFVTSDDGTFIRGSLTEVMKSIALATGIVVVVIFAFLRSPRAVMIPAVTI 370

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L G   N  ++ A++   G  V+D +VV + +   ++     +     
Sbjct: 371 PVSLVGTVAAIWLTGFSVNTISLLALVLATGMVVDDAIVVIENI---VRKRKQGMGAFAA 427

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                NE     + T+       +P++      G V   F   +AF + +++ +++ +A 
Sbjct: 428 AAAGTNEVFFAVISTTATLAAVFIPISFLPGQAGGVFSEFGFVLAFAVTLSSITALTLAP 487

Query: 818 PILLFIY 824
            +  F+ 
Sbjct: 488 VLAAFLD 494



 Score = 42.8 bits (98), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                A+  + T+   +   L   +L G   N  +   ++ LIG    + +++ +      
Sbjct: 872  SIASAVVIMLTVPFGLAAALFAISLSGGSLNYYSQIGLVMLIGVMAKNGILIVEFAN--- 928

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +L          I  ++   +   + T ++     LP+ +    G     +    +  G+
Sbjct: 929  QLREAGQDIDSAIRDALRLRIRPVMMTMVSTVFGGLPLILTSGAGAEARIAVGWVIVGGL 988

Query: 806  VVAASSSIFIAAPILLFIYDW 826
              A   ++F+      ++  W
Sbjct: 989  GFATIFTLFLTPVFYRYVAVW 1009


>gi|85711138|ref|ZP_01042198.1| RND family efflux transporter [Idiomarina baltica OS145]
 gi|85695051|gb|EAQ32989.1| RND family efflux transporter [Idiomarina baltica OS145]
          Length = 1037

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 75/556 (13%), Positives = 166/556 (29%), Gaps = 44/556 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    +V+L  +I   G+   +        +   P                     L   
Sbjct: 21  RRPVLIVVLNILIALAGIAALM-----GVEVRELPDVDQPVVT---------VRATLPGG 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    +   + +           +   +  + F  S   + +A +V   +  
Sbjct: 67  APETVDAEVTSILEGAAARVSGVKSIRSQSEENSARTVVEFQPSVDLDVVAAEVREAVNQ 126

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D ++  +V   +   +++    + D++    + + +E       +    E   
Sbjct: 127 VRRELPEDVEQVNVVKADDDARAVLDIAVSSDKLSLEELTRRLETD--FAPEFLSIEGVA 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      L    DP RL     +   ++                    R       
Sbjct: 185 DVRLNGARERVLRVALDPLRLTSFGLSVTDVADALRQAPFDVPAGSLRSTDQRIIIRADA 244

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  ++  I ++G T                                    A      
Sbjct: 245 TSINAEQVENIIISGDT------------------------RIGDVAQAYFSPADANSFV 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +       +A  +     + A  +   LR     +++ +    +      S + 
Sbjct: 281 RLNGKPVVGVGVIRQAGSNTIEISDQALAMLERLRDRFPDMEMTV-TNDDALFIRKSVAE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV+  L++ +   +  +V   SI + +   +A + L+G ++ + ++  +V
Sbjct: 340 VVTTLAITIALVVATLWVFIGSFRATIVPALSIPVALFGAIAAIWLMGFSINILTLLALV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E I+           +  +     +  +  +        V + F  
Sbjct: 400 LATGLIVDDAIVVAENIQRRRSMGLGSRAAAVLATREVFFAVVATTAVLAAVFVPIAFLP 459

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F   +  +++IS F A+S+V A    + +    K+I       F    +  
Sbjct: 460 STAGRLFREFGGVLAAAVIISSFVALSLVPAFTARLPKNAGKKNIFGPVGGWFKTGYERT 519

Query: 539 AIQFMRARFWGVGISI 554
               +   +  V  SI
Sbjct: 520 LKWALNTSWLIVVFSI 535



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 82/220 (37%), Gaps = 6/220 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            +   + ++ +       +   + ++    +++P S                    +  ++
Sbjct: 803  QRRAIEVEVEIPPEYPLSEATDELRAIAQDVLPDSMGLIFLGEAQTFEDTNREVAMTYIL 862

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
               I +L+          A   + T+   I   +   AL GI  N+ +   ++ LIG   
Sbjct: 863  AFLIVLLVLAAQFESVNSAFVVMLTVPFGIAAAIYALALTGISLNIYSQIGLVMLIGLLA 922

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
             + V++ +      +L    +S RD ++++ +  L   + T ++  +  LP+ +    G 
Sbjct: 923  KNSVLLVEFA---DQLRDRGLSVRDAVEQAASIRLRPIMMTLVSTILGGLPLILSTGAGA 979

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                S    +  G+ +A   ++++   + L++  +    A
Sbjct: 980  EARNSIGWVVFGGLGLATVFTLYLTPVLYLWLARFTKPRA 1019



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 81/245 (33%), Gaps = 12/245 (4%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                S  ++     ++ +   G              S     +LE ++ +  ++    T
Sbjct: 267 AQAYFSPADANSFVRLNGKPVVGVGVIRQAGSNTIEISDQALAMLERLRDRFPDMEMTVT 326

Query: 651 IQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +   +   ++  +    I + ++++ + + I    R     AL     L       + 
Sbjct: 327 NDDALFIRKSVAEVVTTLAITIALVVATLWVFIG-SFRATIVPALSIPVALF----GAIA 381

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G   N+  + A++   G  V+D +VV + +    +  +  +  R     +  E  
Sbjct: 382 AIWLMGFSINILTLLALVLATGLIVDDAIVVAENI---QRRRSMGLGSRAAAVLATREVF 438

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              V T+       +P+A      G +   F   +A  +++++  ++ +       +   
Sbjct: 439 FAVVATTAVLAAVFVPIAFLPSTAGRLFREFGGVLAAAVIISSFVALSLVPAFTARLPKN 498

Query: 827 RAKNA 831
             K  
Sbjct: 499 AGKKN 503


>gi|330894478|gb|EGH27139.1| preprotein translocase subunit SecF [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 210

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 74/212 (34%), Positives = 117/212 (55%), Gaps = 4/212 (1%)

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             I FM  R     I++L +  ++   F  GLN+G+DF GG  + +   RP DL  VR  
Sbjct: 3   RTINFMGVRNVAFAITMLLTALALFSWFHKGLNFGLDFTGGTLIELTYERPADLGKVRQE 62

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L S    +   Q+F    + LVR+  +      Q         +       + ++  E V
Sbjct: 63  LVSAGYHEAVVQSFGATTDLLVRMPGEDPQLGTQVAEA----LRKAGADNPAVVKRVEFV 118

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP++  EL  +G +G++++   +LIY+  RF+W FA+GAI +LI D+  T+G  + F I 
Sbjct: 119 GPQVGEELRDQGGLGMLMALGGVLIYLAFRFQWKFAVGAIISLIHDVVVTMGILSFFQIT 178

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           F+LT +AAVL +IGYS+ND +VV+DR+R+N +
Sbjct: 179 FDLTVLAAVLAIIGYSLNDTIVVFDRVRENFR 210


>gi|289208042|ref|YP_003460108.1| acriflavin resistance protein [Thioalkalivibrio sp. K90mix]
 gi|288943673|gb|ADC71372.1| acriflavin resistance protein [Thioalkalivibrio sp. K90mix]
          Length = 1033

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 61/547 (11%), Positives = 156/547 (28%), Gaps = 40/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   I   G+            + +FP                         
Sbjct: 9   QKPVLATVVSLFILLFGVRAVF-----DLNVRQFPEVQNAVVT---------VSTAYIGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + D V GF+    +   +  +     V +     + +               +++  +  
Sbjct: 55  DADLVQGFITTPMEREIAEAEGIDYIVSNSLPGMSTVQAFLELDYDPNQALTQISAQVDK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  + +  ++  +  ++++ +      +++ ++    +  +IR+   ++       
Sbjct: 115 IRSDLPSEAEDPVVDLSVGQDVAAMYMSFYSERLSNNQT--TDYLIREVQPELATVNGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D  R+     T   +                    +  + G   
Sbjct: 173 RAEILGDQSFAMRAWLDADRMAAYGVTGRDVRSAL------------EGNNVLSAVGQTK 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                ++++          F+         +   E             +           
Sbjct: 221 GSMVSLDLTADTDLQTPEAFEE--------LILFEQDGDLVRLGDIAEVELGSENYDTSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAM-LRAGSLPIKLNIVEERNVGADLGSDS 360
                             +    I     +    +           +   +      +  
Sbjct: 273 RFNGQAATFIGIELAPDANALEVIADVREIFEQRIEPRLPSGLEGEIVYDSTEYIESAID 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   +VL+V+++++   +  L+   ++ L++I T  L+ L+G +L L ++  +
Sbjct: 333 EVLTTIVLALLIVLVVIYLLLGSWRSVLIPAVAVPLSLIGTFMLMLLMGFSLNLLTLLAM 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I++ E I     +  S   +   G       I   + T +   + L F 
Sbjct: 393 VLAIGIVVDDAIIMLENISRHIEEGMSRMDAAIQGARELAWPIVAMSTTLVAVFLPLGFI 452

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG        FA T+  +++IS   AI++   M   I+R   ++                
Sbjct: 453 GGLTGTLFIEFAFTLAATVVISGIVAITLSPMMCSKILRDGSVERRGRIESWLDARFDSL 512

Query: 538 IAIQFMR 544
                 R
Sbjct: 513 RERYRRR 519



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 90/276 (32%), Gaps = 11/276 (3%)

Query: 554  ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
             + +     +      +     +        A+           LE         +    
Sbjct: 748  AMENRSYRVIPQVQRSDRLTPEQLEELYTRTADGEPVPLSSIVTLEETVTPRQLNRFQQL 807

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                L  +            +++ +  ++                     +L    +V  
Sbjct: 808  NAVTLQGVPRPGVTLGEALDIIDRIAAEVLPPDVNVDYAGESRQLKAEGGDL----VVTF 863

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + + + + +  +F+ +   L  +TT+ + I   L F +L     N+     +LTLIG 
Sbjct: 864  FFALVVIFLVLAAQFESFRDPLIILTTVPMSIAGALIFISLGVTSLNIYTQVGLLTLIGL 923

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +      +L       RD I+++ +  L   + T+ A  ++++P+ +    
Sbjct: 924  IAKHGILIVEFAN---QLQRQGRPLRDAIEEAASLRLRPILMTTTATVVAMVPLLMATGA 980

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G     +  + +A G+ +    ++F+   I  ++  
Sbjct: 981  GAGSRFAMGLVIAAGMAIGTLFTLFVVPAIYTYVAR 1016



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 52/136 (38%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            +   W   L     + L +  T     L G   NL  + A++  IG  V+D +++ + +
Sbjct: 351 LLLGSWRSVLIPAVAVPLSLIGTFMLMLLMGFSLNLLTLLAMVLAIGIVVDDAIIMLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +     +S  D   +   E     V  S       LP+   G   G++   FA  +
Sbjct: 411 ---SRHIEEGMSRMDAAIQGARELAWPIVAMSTTLVAVFLPLGFIGGLTGTLFIEFAFTL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  +V++   +I ++ 
Sbjct: 468 AATVVISGIVAITLSP 483


>gi|319442162|ref|ZP_07991318.1| preprotein translocase subunit SecD [Corynebacterium variabile DSM
           44702]
          Length = 613

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 110/554 (19%), Positives = 205/554 (37%), Gaps = 59/554 (10%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             +I    +++              P         LG+DL+GG+ + L    D      L
Sbjct: 3   ALLIFLALVVVMYSFVFLTGDKKAGP--------KLGIDLQGGTRVTLVPQGDKPSGSQL 54

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA---DKVTLFLQGVNSKLN 127
                 L + +   G+    +    + + ++                  L  + V     
Sbjct: 55  DQARKILENRVNGMGVSGAQVVTDGDTLVITVP-GDDSSQARSLGQTSQLLFRPVTGGQA 113

Query: 128 VDPK-------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI-IRQRIDQ 173
            D K             +N ++T  E    +  +  N      +A E++  +  +     
Sbjct: 114 PDEKLFDSLTEMADRWVENGILTVDEANTKLSEATENFKGSEFNAPEKAPTVTAKAPAAP 173

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
               E T QR  +  +L      +DP            ++        +           
Sbjct: 174 ANSIEETEQRNTTVDVLKTDRQSEDP---NTQNAAALLLTCDASDDPLAGADDPAKPLVT 230

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS-------------------F 274
               G   L++    + G                P  +I                     
Sbjct: 231 CSDTGAPILLDAAPLLKGETDGPDARRMTGDMIDPDSNIFGGLDSQSGQMVVTFGFKQGE 290

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQISGNFTIETAGILAA 333
              G+  + ++T   + + +A+ LD +VL+AP I  A       QI+G+F+ + A  LA 
Sbjct: 291 ANPGSETWADLTNQYLNQQIAITLDSQVLSAPTIQSATPVGQGTQITGDFSEKEAKDLAN 350

Query: 334 MLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
            L+ G+LP+               + A +G  S+  G  A + GL+++ L+ +  Y   G
Sbjct: 351 NLKYGALPLSFTGENGEKGGTAETISASMGEASLKAGLTAGIIGLIIVALYALAYYRGLG 410

Query: 388 LVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
           ++A  S+  + IL    L LL      +L L  IAG+++GIG   DS ++  ERI++E  
Sbjct: 411 VIALASLVTSGILIYGGLVLLGRWIDYSLDLAGIAGLIIGIGTTADSFVVYFERIKDEIH 470

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
           K  +   ++   + RA +TI   N+ +L+A++VL+F   G V+GFA T+GL+ +  +  A
Sbjct: 471 KGSTFRSAVPRAWKRARATIITGNVVSLVASLVLYFVAVGNVKGFAFTLGLTTVFDVVIA 530

Query: 504 ISIVRAMMIFIIRY 517
             +   ++I + R 
Sbjct: 531 FLVTAPLVILVSRR 544



 Score = 89.4 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 74/219 (33%), Gaps = 8/219 (3%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G+   +     +         +                    E +   +    ++ G+  
Sbjct: 331 GQGTQITGDFSEKEAKDLANNLKYGALPLSFTGENGEKGGTAETISASMGEASLKAGLTA 390

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLT 728
            II  I + +Y    ++    + A+ +L+       G   L G       +L  +A ++ 
Sbjct: 391 GIIGLIIVALYALAYYR-GLGVIALASLVTSGILIYGGLVLLGRWIDYSLDLAGIAGLII 449

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG + +  VV ++R++  +       +FR  + ++        +  ++ + ++ L +  
Sbjct: 450 GIGTTADSFVVYFERIKDEIH---KGSTFRSAVPRAWKRARATIITGNVVSLVASLVLYF 506

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                +  FA  +    V     +  + AP+++ +    
Sbjct: 507 VAVGNVKGFAFTLGLTTVFDVVIAFLVTAPLVILVSRRE 545


>gi|87125001|ref|ZP_01080848.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           RS9917]
 gi|86167321|gb|EAQ68581.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           RS9917]
          Length = 1060

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 82/644 (12%), Positives = 177/644 (27%), Gaps = 40/644 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   + ++   +     +L+A    L    L+  P   P                    
Sbjct: 23  LRRPVFTIVCSLL-----VLLAGLVALVGLGLEDLPQLAPTRV---------SVSATFPA 68

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++  + L+       S RQ    I+L F      E  A KV   + 
Sbjct: 69  AGPEVVEQSVTAVLEKQLNGLEGLESMSSSSRQGGASISLRFESG-DPELNAIKVQNEVN 127

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             N +L     +  L      +  +++   +  + +         + +   + +  +   
Sbjct: 128 LANRRLPQPVTRQGLSVRRSSDDILLILGFSAPKGLYAPTFIGGWLDQNLRESLRSTPGV 187

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +        +      +  +L Q   T+  ++      N        G     +     
Sbjct: 188 GEIRVFGSSELAFRLWLNADQLEQYDLTSNDITTALAEQNVLAALGSLGEAPAPEGQVFS 247

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+ +  +       A              +   + G                      
Sbjct: 248 LPVDAEGRLLSQAEFEAM------------VVKRSDSGGLVRLRDVGRVELGKENYGSSA 295

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +            A L+    P     V          +  
Sbjct: 296 MNLQGESAVAVGIFQRDGANALELSRAVQAELAKLQESFPPGLTMQVIVDVAETVQANLD 355

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LVL+VL + +   +  ++   ++ + +I +L ++ L G+ L    + G+
Sbjct: 356 RTTDTLRDAVLLVLVVLVLFLGRWRLAMIPGIAVPVALIGSLVIVKLSGSNLNSLILFGL 415

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATVVLFF 479
           VL  G+ VD  I+V+E I     +      + +   +  A + I  S + A +   VL  
Sbjct: 416 VLATGIVVDDAIVVSEDIAGRIERGAEPQGAAEDAMAELAGAVIATSLVLAAVFVPVLLI 475

Query: 480 FG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINP 527
            G  G   +  A+ +  +IL S F A++        +             +   S+    
Sbjct: 476 PGSIGRLYQPIALAITGAILFSTFNALTFTPMACARVLGPGGGRLPGPLKRLSASLRNGM 535

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +A    R R     +     +  I L          + +G ++       
Sbjct: 536 SRTQETYGRVLATWLPRGRLVIGLLLAGLVVTGIGLASMPTAFIPDEDQGQVRGYFTLPD 595

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
              L    + +E ++              +  R   Q G+    
Sbjct: 596 GASLERTEAVMEQIRQVVADEPLIRTGNFYAGRSFGQSGEDKGS 639



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 67/161 (41%), Gaps = 9/161 (5%)

Query: 673  VIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            ++ S   +++Y+ +      +   L  + T+ + +   L    L G+  ++     +L L
Sbjct: 891  ILFSLGILVVYLLLAGLYESFLDPLIILLTVPMALLGALIGLKLRGLPLDVYGQMGMLVL 950

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +  +  + +++ +      +     ++  D I+ +    +   + T++ +    LP+ + 
Sbjct: 951  VSLAAKNGILIVEFAN---QRLDQGMALLDAIEGAAINRMRPILLTAVTSLAGFLPLLLA 1007

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               G +   S    +  G++V+   S+F+   + L +  WR
Sbjct: 1008 SGTGSASRISIGTVVFSGLLVSTLLSLFVVPAMYLLLKRWR 1048



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 50/135 (37%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
              +W  A+     + + +  +L    L G   N   +  ++   G  V+D +VV + + 
Sbjct: 375 FLGRWRLAMIPGIAVPVALIGSLVIVKLSGSNLNSLILFGLVLATGIVVDDAIVVSEDI- 433

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMA 802
                       +   + ++ E  G  + TS+      +P+ +  GS+       A+ + 
Sbjct: 434 --AGRIERGAEPQGAAEDAMAELAGAVIATSLVLAAVFVPVLLIPGSIGRLYQPIALAIT 491

Query: 803 FGIVVAASSSIFIAA 817
             I+ +  +++    
Sbjct: 492 GAILFSTFNALTFTP 506


>gi|326773263|ref|ZP_08232546.1| protein-export membrane protein SecD [Actinomyces viscosus C505]
 gi|326636493|gb|EGE37396.1| protein-export membrane protein SecD [Actinomyces viscosus C505]
          Length = 673

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 114/595 (19%), Positives = 215/595 (36%), Gaps = 93/595 (15%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DEDDFV 66
           ++ ++  IG   AL     +      P         L LDL GG+ L+L     D     
Sbjct: 1   MFILVLVIG-FGALVAGSMRHKASLTPG--------LALDLEGGTQLILTPTTSDGSAIS 51

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL----FLQGV 122
           +  ++   + +R  +   G+    + +   +  +     +  +   + V      + + V
Sbjct: 52  DNDVEQAIEVIRQRVDASGVSEAQISRQGGQNIVVSLPGKPSQATLELVRTSAVMYFRPV 111

Query: 123 NSKLNVDPKK---NLLVTTTEKEISIVLSQNNIDQVISHAIEQS---------------- 163
              L    ++   N+         +   +        S A + +                
Sbjct: 112 LRILPGSAQQAAKNIASQNPSGGPTPAQAAQPSPSAGSEATQPAADSEGAQEDSGQGEQA 171

Query: 164 ---------------------MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
                                 EI +Q  D       +   L +               L
Sbjct: 172 AATPAPTAQPTAQSTAQPRTPEEIAKQLADVNQDGVISSDPLPAQDKTNSSDSWITEKLL 231

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-----A 257
                T      +        K  +        S      +    EI+G  L        
Sbjct: 232 YDGYMTDCSDPKNLTGQTQDPKVAVISCSKEAGSQHQGAYILGPAEITGTELKSANSGLE 291

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL-------------- 303
           T +    TH+ VV ++F+  G ++F E+++  +         G                 
Sbjct: 292 TDSRGQATHQWVVSLAFNADGTKKFAELSKRLLAYRDQASAAGAQGAQGAQNQDSQAKAQ 351

Query: 304 --------------TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                             ++  I  G+ QI+G F+   A  LA  L  GSLP+   +  E
Sbjct: 352 FAIVLDGLTIMASGFNETVHSPITDGRVQITGGFSQNQANTLANQLSFGSLPLSFTVQSE 411

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
           + + A LG++ +  G  A + G  LI+L++   Y    +VA  S+ +    T  +++ L 
Sbjct: 412 QQISATLGTEQLRNGLIAGLIGFALIILYLAWQYRGLAVVAVASLVVAAAGTYLVIAALS 471

Query: 410 ATL----TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           AT+    +L  +AG+++ IG+ VDS I+  ER+R+E R+ +++  ++D G+  A  TI  
Sbjct: 472 ATMGYRLSLAGVAGLIISIGITVDSFIIYFERVRDEVRQGRTLRTAIDEGWKHARRTILV 531

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           S+   L+A +VL+F   G V+GFA T+G++  + +   I     MM +I+R++  
Sbjct: 532 SDAVNLVAAIVLYFLAVGGVQGFAFTLGVTTCVDLAIIILFTHPMMEWIVRFRFF 586



 Score = 98.6 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 73/202 (36%), Gaps = 6/202 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                     +     +    T+Q+ + +   +  E +R G++  +I    +++Y+  ++
Sbjct: 386 SQNQANTLANQLSFGSLPLSFTVQSEQQISATLGTEQLRNGLIAGLIGFALIILYLAWQY 445

Query: 689 K---WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +          +              A  G   +L  VA ++  IG +V+  ++ ++R+R
Sbjct: 446 RGLAVVAVASLVVAAAGTYLVIAALSATMGYRLSLAGVAGLIISIGITVDSFIIYFERVR 505

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
             ++      + R  ID+         + +     ++ + +       +  FA  +    
Sbjct: 506 DEVRQ---GRTLRTAIDEGWKHARRTILVSDAVNLVAAIVLYFLAVGGVQGFAFTLGVTT 562

Query: 806 VVAASSSIFIAAPILLFIYDWR 827
            V  +  I    P++ +I  +R
Sbjct: 563 CVDLAIIILFTHPMMEWIVRFR 584


>gi|322831526|ref|YP_004211553.1| acriflavin resistance protein [Rahnella sp. Y9602]
 gi|321166727|gb|ADW72426.1| acriflavin resistance protein [Rahnella sp. Y9602]
          Length = 1041

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 60/525 (11%), Positives = 136/525 (25%), Gaps = 33/525 (6%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90
            +   P       +             L     + +   +    +     +         
Sbjct: 33  PVAPLPQVDFPTIL---------VSASLPGASPETMAATVATPLERALGQIAGVTEMTSR 83

Query: 91  MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
             Q    + L F   R     A  V   +    + L                 + ++   
Sbjct: 84  SSQSSTSVILQFDLDRDINGAARDVQAAINASRALLPSSMPSLPTYRKANPSDAPIIM-L 142

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
            +        E       Q   +I       Q       L  +  +  P  +     +  
Sbjct: 143 ALTSATRSKGELYDIASSQLQQKIAQVNGVGQVSLVGSALPGVRIDLRPEAVTSYGISLD 202

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            +                              +   +            N    T     
Sbjct: 203 TIRAAIADS--------------------TSNLPKGLLQGSDQSWMIEGNGQQSTAAQYK 242

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +    +           N+   +    +     +        + +A  +   TI+    
Sbjct: 243 TLIVTYINGSAIRLSDIANVYDSVEDKYNVGYYNSTPSVMIGVTRQAGANMLETIQAIKA 302

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
              +++          +          S    + T      LV+ V+F+ +      L+ 
Sbjct: 303 ALPLMKESLPGDVQLNLALDRSPNVSASLRDTEMTLMEATLLVIAVVFVFLRNWNAVLIP 362

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ +++I T A++ LLG +L   S+  +++  G  VD  I+V E I     +      
Sbjct: 363 AVALPVSLIGTCAVMYLLGYSLDNLSMMALIISTGFVVDDAIVVLENITRHIEEGMGPVR 422

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIV 507
           +   G      T+    ++ +   + +   G   G   R FA+T+ +S++ISM  ++S+ 
Sbjct: 423 AALKGAQEVSFTVLSMTLSLIAVFIPILLMGSIVGRLFREFAVTLSVSLIISMLVSLSLT 482

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
             +    ++ K         + R         +    A    V  
Sbjct: 483 PMLCARFLKRKPPVEKRQPRIYRMIEHGLNKLLAAYSAALGWVMR 527



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 26/253 (10%), Positives = 80/253 (31%), Gaps = 11/253 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +  +   ++     +  ++   + +     G     V  Q           +   +    
Sbjct: 254 IRLSDIANVYDSVEDKYNVGYYNSTPSVMIG-----VTRQAGANMLETIQAIKAALPLMK 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +     +       P +S  L    +  +  + + + +       W   L     L +
Sbjct: 309 ESLPGDVQLNLALDRSPNVSASLRDTEMTLMEATLLVIAVVFVFLRNWNAVLIPAVALPV 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     L G   +  ++ A++   G+ V+D +VV + +    +     +       
Sbjct: 369 SLIGTCAVMYLLGYSLDNLSMMALIISTGFVVDDAIVVLENI---TRHIEEGMGPVRAAL 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K   E     +  +++     +P+ + G   G +   FA+ ++  ++++   S+ +   +
Sbjct: 426 KGAQEVSFTVLSMTLSLIAVFIPILLMGSIVGRLFREFAVTLSVSLIISMLVSLSLTPML 485

Query: 820 LLFIYDWRAKNAR 832
                  +    +
Sbjct: 486 CARFLKRKPPVEK 498



 Score = 40.8 bits (93), Expect = 0.92,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 86/242 (35%), Gaps = 6/242 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S   +    +         +     + +   D  A       +K  + +I    T+  + 
Sbjct: 785  SAFATFSGANAPLSVSHQGQTATTTIAFNLADGYALEDAQAALKTAMAQIGLPDTVHGSY 844

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +    L       ++ +  A+ I + + ++ +   L  ++TL       L    + 
Sbjct: 845  AGTAQAFEALASSMPWLILAALAAVYIVLGVLYESYIHPLTILSTLPSAGLGALLLMLMT 904

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +  + A+  +L LIG    + +++ D            ++ +  I ++        + 
Sbjct: 905  NTQLTVIALIGILLLIGIVKKNAIMMIDFALD--AERRLGLTPQQAITQACLMRFRPILM 962

Query: 775  TSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++AAF   LP+A+  G    +     + +A G+ ++   ++F    + L++        
Sbjct: 963  TTLAAFFGALPLAMGSGGDADLRSPLGLAIAGGLALSQILTLFTTPVVYLYMDRTSRATH 1022

Query: 832  RI 833
            R+
Sbjct: 1023 RL 1024


>gi|306846028|ref|ZP_07478595.1| multidrug efflux transporter protein, AcrB/AcrD/AcrF family protein
           [Brucella sp. BO1]
 gi|306273663|gb|EFM55508.1| multidrug efflux transporter protein, AcrB/AcrD/AcrF family protein
           [Brucella sp. BO1]
          Length = 1026

 Score =  140 bits (353), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 72/605 (11%), Positives = 159/605 (26%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+  +          +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILDLTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGDTIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           D+     G R         +   +  V  G 
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRDLIVAGSGNRIVRLSDVATVLDSVDDVNQGS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 89/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q    +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDDVNQGSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 92/259 (35%), Gaps = 10/259 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRVPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPSGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPV 1002

Query: 819  ILLFIYD----WRAKNARI 833
            I + I            ++
Sbjct: 1003 IFVEIDRLANHRWFSRKKV 1021


>gi|221638640|ref|YP_002524902.1| Acriflavin resistance protein [Rhodobacter sphaeroides KD131]
 gi|221159421|gb|ACM00401.1| Acriflavin resistance protein [Rhodobacter sphaeroides KD131]
          Length = 1048

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 62/516 (12%), Positives = 146/516 (28%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L ++I   GL       L  + +   P                      +  
Sbjct: 22  RRPILAFVLNALILIAGLAA-----LYGADVRELPDVDSPVIT---------VTTTFDGA 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   S +        S R  ++++T+ F D    +  A  +   +  
Sbjct: 68  SSETIDQEVTDEIEGAASRVAGVKSISSSSRFGRSQVTVEFNDDTNLDVAASDMRDSISR 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D  +  +V       +++            A E +  +  Q   ++  +    
Sbjct: 128 IRNNLPDDADEPRIVKADANSEAVMRVAVTSA--RRSAQELTQIVEDQIESRLLAAPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         +     L     T A +                             
Sbjct: 186 DLQIYGDRTPIFRVDVGQMLLASRGLTLADLRTALGNVAYDAPAGSLTSDRQSLVVRTTA 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V        + +                        A          +           
Sbjct: 246 TVTTPAAFEALEI------------------------APDVRLGDVATVELGPEPGASYL 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +     +    + A L+A         V   +     G+   
Sbjct: 282 RANGENGVGLGIIRQAQSNTLEISKAVREIVAGLQADLPQDVRIFVTSDDATFINGAIHE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   +V+ ++++ +   +  L+   +I + ++ TLA + + G ++ + ++  +V
Sbjct: 342 VEIALGLSVLIVVAIIYLFLRDMRATLIPTLAIPVALVGTLAAIWIAGFSINILTLLALV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+V E I     +      +  +G  + +  +  +  T     + L F  
Sbjct: 402 LATGMVVDDAIVVLENIVRWRAQGIGPRAAAVLGTQQVFFAVIATTTTLAAVFIPLSFLP 461

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F  T+ +S+L+S  TA+S+   +    
Sbjct: 462 GQTGGLFREFGFTLAISVLLSSVTALSLCPVLASRF 497



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 79/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  V +     + G    +        L  ++    +++  ++ +  +   +
Sbjct: 256 LEIAPDVRLGDVATVELGPEPGASYLRANGENGVGLGIIRQAQSNTLEISKAVREIVAGL 315

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTLI 701
              +P                  I +  + + +S  I + I           L     + 
Sbjct: 316 QADLPQDVRIFVTSDDATFINGAIHEVEIALGLSVLIVVAIIYLFLRDMRATLIPTLAIP 375

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  TL    + G   N+  + A++   G  V+D +VV + +   ++     I  R   
Sbjct: 376 VALVGTLAAIWIAGFSINILTLLALVLATGMVVDDAIVVLENI---VRWRAQGIGPRAAA 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
                +     + T+       +P++   G        F   +A  +++++ +++ +   
Sbjct: 433 VLGTQQVFFAVIATTTTLAAVFIPLSFLPGQTGGLFREFGFTLAISVLLSSVTALSLCPV 492

Query: 819 I 819
           +
Sbjct: 493 L 493



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/172 (13%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 666  IRKGIVGV-IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTA 722
               G+      + + +L+ +  +F+ + +   +   +  +      FAL   G   N+ +
Sbjct: 855  TSSGLTATFGFAIVIVLLVLAAQFESFVSAFIVMATV-PLGLACAIFALVATGGSLNVYS 913

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ L+G    + +++ +      +L    +  R  I+ +    L   + T +A  + 
Sbjct: 914  QIGLVLLVGIMAKNGILIVEFAN---QLRDEGLPVRRAIEDACAIRLRPVMMTMIATVLG 970

Query: 783  VLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             LP+    G+   +       +  G+ +A  +++++     L +       A
Sbjct: 971  GLPLVFAAGAGAEAREVLGWIIVGGLGLATVATLYLTPVAYLLLAGLSRPKA 1022


>gi|150389325|ref|YP_001319374.1| acriflavin resistance protein [Alkaliphilus metalliredigens QYMF]
 gi|149949187|gb|ABR47715.1| acriflavin resistance protein [Alkaliphilus metalliredigens QYMF]
          Length = 1041

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 54/513 (10%), Positives = 144/513 (28%), Gaps = 38/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+   +I  +G +      L +  ++ +PS                        
Sbjct: 9   KRPVTTVVAMLIIILLGTIS-----LTRLPIELYPSMEIPVA---------AVITSYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + ++   I   +  Q  + + + F      +    ++   +  
Sbjct: 55  GPHEVENLITRPIEEAMATVRNVDIIHSTSAQGSSVVPIIFKAGTDMDMATLEMREEVDL 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L       +++        I+                 +        +    E   
Sbjct: 115 IKGALPAGSTDPMVIRLDPNADPIMYISL---TNGEDLTSLQVLAEETIKPRFERIEGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++  + +  RL     + ++++      N +                   
Sbjct: 172 AAGVSGGYTNEIQIKTNQRRLDNYGISLSQLAQIINASNMNLP----------------- 214

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G       A  + ++   + ++                 +      +    
Sbjct: 215 ---GGTINDGEKELPVRAMGEFRSIDEIKEVPVTLPTGSIITLKDIAEVELTHQDIKSIS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +            + L+     I    +          S + 
Sbjct: 272 RTNGKASINISIQKQPGSNTVEVAALIHAEISKLQNEYADIA-IDITLDESKYITNSINS 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +     ++VL++ +   +  L+   SI ++VI T  L+   G TL + S+ G+ 
Sbjct: 331 LTLNVILGGIFAIMVLYLFLRNIRTTLIIGTSIPISVIATFGLMYFSGITLNMISLGGLA 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LG+G+ VD++I+V E I     +  S   +   G       +    +T +   + + F  
Sbjct: 391 LGVGMLVDNSIVVLENIYRFRVEGYSRTEAAVKGTLEVAQAVAAPTLTTIAVFLPILFVE 450

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              V  +   M L+++ S+  ++ +   ++  +
Sbjct: 451 DMMVNIYFGEMALAVIFSLIASLVVSLTLIPML 483



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 82/245 (33%), Gaps = 5/245 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +     + L  +     + Q      +        +   +    ++V    ++    
Sbjct: 243 PVTLPTGSIITLKDIAEVELTHQDIKSISRTNGKASINISIQKQPGSNTVEVAALIHAEI 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K+        I  T      I+  +    +  ++    A+++           L   T+
Sbjct: 303 SKLQNEYADIAIDITLDESKYITNSINSLTLNVILGGIFAIMVLYLFLRNIRTTLIIGTS 362

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T G     GI  N+ ++  +   +G  V++ +VV + +    +      S  +
Sbjct: 363 IPISVIATFGLMYFSGITLNMISLGGLALGVGMLVDNSIVVLENI---YRFRVEGYSRTE 419

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP-MAFGIVVAASSSIFIAAP 818
              K   E        ++      LP+ ++   ++ +     MA  ++ +  +S+ ++  
Sbjct: 420 AAVKGTLEVAQAVAAPTLTTIAVFLPI-LFVEDMMVNIYFGEMALAVIFSLIASLVVSLT 478

Query: 819 ILLFI 823
           ++  +
Sbjct: 479 LIPML 483



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 94/252 (37%), Gaps = 12/252 (4%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +        ++  + + ++ I    FQ    ++  +V +  + GD   Q+ + ++    
Sbjct: 783  QMSIQTAAGGNIPLNQVANVSIERSPFQIDRIDQQRVVTVTGEIGDRDLQSIMRDIDGAL 842

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
                +P          G ++   +    +  ++++   + + +  +F+ W      I ++
Sbjct: 843  KEYPLPPGYTYEIGGQGLQMGDTM-NALLFALVMAIGLVYLVMAAQFESWMHPFIIILSV 901

Query: 701  ILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
                    G   LF  G    LTA+  ++ L G  VN+ +V+ D +     L        
Sbjct: 902  --PTALAGGLLGLFITGKSLGLTAMIGIVMLAGIVVNNAIVLLDYIN---TLRAAGKDRT 956

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            D I  +    L   + T+    + +LP+A+    G        I +  G++++   ++ +
Sbjct: 957  DAITTAGPIRLRPILMTTATTVLGLLPVAIGIGEGAEAQAPMGIVVIAGLLLSTILTLVL 1016

Query: 816  AAPILLFIYDWR 827
               +   + D+ 
Sbjct: 1017 IPTVYTLVDDFS 1028


>gi|292487173|ref|YP_003530043.1| cation/multidrug efflux pump mdtc [Erwinia amylovora CFBP1430]
 gi|292900447|ref|YP_003539816.1| multidrug resistance protein [Erwinia amylovora ATCC 49946]
 gi|291200295|emb|CBJ47423.1| multidrug resistance protein [Erwinia amylovora ATCC 49946]
 gi|291552590|emb|CBA19635.1| Cation/multidrug efflux pump mdtC [Erwinia amylovora CFBP1430]
          Length = 1032

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 66/575 (11%), Positives = 159/575 (27%), Gaps = 39/575 (6%)

Query: 56  LVLEVDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           +++           +        +     +           Q  + + L F+  R     
Sbjct: 45  ILVTASLPGASPETMAATVATPLERALGQIAGISEMTSQSSQSSSTLILQFSLDRDINGA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
           A  V   +    S L                 + ++    +      + E       +  
Sbjct: 105 ARDVQAGINAARSLLPGSMPSLPTYRKANPSDAPIVM-LALSSTTRTSAELYDLAESKIQ 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            +I       Q       L  +  +  P +L Q   +   +         +K        
Sbjct: 164 QRISQVNGVGQVSLRGSALPGVRIDPQPQQLSQYGISLDTLREAIANSTTNKPKG----- 218

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGA-TANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                            +SG   +    +N      +   D+       R         +
Sbjct: 219 ----------------MLSGDRQSWMVDSNGQRDRAEQFRDLVVSYRDGRAIRLRDVATV 262

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
              +    +              +  A  +   TI+    L  +            +   
Sbjct: 263 SDAVEDKYNVGYYNGVPSVMIGVTRSAGANMLETIDRIKALMPLFEKQLPADMKLAIVVD 322

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                  S    + T  +   LV+ V+F+ +   +  ++   ++ L++  T A++ LL  
Sbjct: 323 RAPNVRASLYDTEETLLVATLLVIGVVFLFLRDIRAVVIPALALPLSLTGTCAVMYLLDY 382

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           +L   S+  +++  G  VD  I+V E I        S   +   G      T+    ++ 
Sbjct: 383 SLDNLSLMALIIATGFVVDDAIVVLENITRHIEAGLSPVRAAIKGAKEVSFTVLSMTLSL 442

Query: 471 LIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           +   + +   G   G   R FA+T+ +S++IS+  ++S+   +   +++ +       +P
Sbjct: 443 VAVFIPILLMGSIVGRLFREFAVTLTVSLIISLLVSLSLTPMLCSRLLKRRSPPERRPHP 502

Query: 528 LSRFFLIPDCI---------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            SR+                       R     + +   +            +     G 
Sbjct: 503 FSRWIEQGLNRLLARYATALNWVMRHQRLTLFSLMLTVLLNIFLYSVVQKGFFPNQDTGL 562

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +   + A++ +    +   ++       +    DG
Sbjct: 563 LMGMMRADQNISFQAMEPKMQQFASLIAADPAVDG 597



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 80/253 (31%), Gaps = 11/253 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +S    +  ++   +       G     V             R+  ++    
Sbjct: 254 IRLRDVATVSDAVEDKYNVGYYNGVPSVMIG-----VTRSAGANMLETIDRIKALMPLFE 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            ++     +       P +   L       ++ + + + +           +     L L
Sbjct: 309 KQLPADMKLAIVVDRAPNVRASLYDTEETLLVATLLVIGVVFLFLRDIRAVVIPALALPL 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +T T     L     +  ++ A++   G+ V+D +VV + +    +     +S      
Sbjct: 369 SLTGTCAVMYLLDYSLDNLSLMALIIATGFVVDDAIVVLENI---TRHIEAGLSPVRAAI 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K   E     +  +++     +P+ + G   G +   FA+ +   ++++   S+ +   +
Sbjct: 426 KGAKEVSFTVLSMTLSLVAVFIPILLMGSIVGRLFREFAVTLTVSLIISLLVSLSLTPML 485

Query: 820 LLFIYDWRAKNAR 832
              +   R+   R
Sbjct: 486 CSRLLKRRSPPER 498



 Score = 42.4 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
               T  ++ +  I ++  +     + T++AAF   LP+A+  G    +     + +A G+
Sbjct: 937  AERTQGMTPQQAITQACLQRFRPIMMTTLAAFFGALPLALGSGGDADLRSPLGLAIAGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   ++F   P++    D  ++ A+
Sbjct: 997  MLSQLLTLF-TTPVVYLYLDRVSRAAK 1022


>gi|254695840|ref|ZP_05157668.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella abortus bv. 3 str. Tulya]
 gi|261216261|ref|ZP_05930542.1| RND family transporter [Brucella abortus bv. 3 str. Tulya]
 gi|260917868|gb|EEX84729.1| RND family transporter [Brucella abortus bv. 3 str. Tulya]
          Length = 1026

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 157/605 (25%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 91/247 (36%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            + A     + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRAPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPV 1002

Query: 819  ILLFIYD 825
            I + I  
Sbjct: 1003 IFVEIDR 1009


>gi|119484320|ref|ZP_01618937.1| cation or drug efflux system protein [Lyngbya sp. PCC 8106]
 gi|119457794|gb|EAW38917.1| cation or drug efflux system protein [Lyngbya sp. PCC 8106]
          Length = 1030

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/590 (11%), Positives = 169/590 (28%), Gaps = 49/590 (8%)

Query: 5   PWLVIL-YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE- 62
            WL++     +   G+         Q  LD FP   P               +  E    
Sbjct: 17  RWLIVAGAIFVTVWGVFSI-----SQMPLDVFPEFAPPQ-----------VDIQTEAVGL 60

Query: 63  -DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   + +  +   + L        S +   + + + F  +         VT  LQ 
Sbjct: 61  APEEVETQITVPIESAVNGLPGVTTVRSSSKVGLSMVQVVFDQNADIYKARQSVTERLQQ 120

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-VISHAIEQSMEIIRQRIDQIGISEST 180
           V ++L        +        +I+     +++   +  ++    +     +QI      
Sbjct: 121 VTNQLPEGAHPPEISPLVSPLGTILQYAFTVNEQGQTSLMDLRGLVEVTLSNQILSVPGV 180

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q         Q     DP++LR L  +   ++                        G  
Sbjct: 181 SQVTIYGGDERQEQVLVDPAKLRSLDVSLTDVTNAAR--------------------GAN 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                   I G             + + +                    +   +A+    
Sbjct: 221 SNAPGGFLIGGGQELLVRGIGQVNSIEDLQQSVVKVQNGIPILLQDVAEVKIGVALKRGD 280

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      + + +  +      +    + A LR    P    +   R       +  
Sbjct: 281 ASFNGQPAVVLMINKQPDVDTPTVTKAVEAVMASLRPTFPPDVEIVRTFRQSNFIDSAIR 340

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
              G+      +V ++L + ++  +   +   +I L++++ L  +   G  +   ++ G+
Sbjct: 341 NVSGSLIQGIIIVSVILLLFLMNWRTAAITLSAIPLSLLVGLMFMKAFGLGINTMTLGGL 400

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           V+ IG  VD  I+  E      R NQ        F  +          +  S +  ++  
Sbjct: 401 VVAIGSVVDDAIVDMENCYRGLRNNQAQDNPKHPFLVVYDTSVEVRLAVIFSTVIIVVVF 460

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
             +F      G       +   LSI  S   A+++  A+   ++  + +           
Sbjct: 461 APIFSLTGVEGRIFAPMGLAYLLSICASTLVAMTLSPALCAILLANQTLPQEGTFISRWA 520

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +        +R+    + +++   + +  ++ + G  +  +F+    +
Sbjct: 521 ERLYRPWLNVSLRSPQIILTMALAALVGTCAIVPSLGRVFLPEFQEKSLV 570



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 94/249 (37%), Gaps = 9/249 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +  + P    +  S +  ++ G  +      + + L+ +     +    + V ++     
Sbjct: 782  ITISTPTGQIIPLSEVAEVEYGMGANVVNREDVSRLIVVSANVAERDLGSVVGDIQATIK 841

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
              I   +          +  +      ++  I++A  + + ++   K   A  AI    L
Sbjct: 842  QNIQLPNGYFIQYGGQFEAEQNATNNLLIYSILAAFVIGVLMFFSVKSLPATIAIMMN-L 900

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +    G  ++   G   ++ ++   +TL G +V + +++ D      K +   +  +D+
Sbjct: 901  PLALVGGIVSILVTGGVISVASLIGFITLFGVAVRNGLLLVDNYN---KKFARGMFLKDV 957

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I     E +   + T++ + + +LP+A+    G  ++   AI +  G+  + + ++ +  
Sbjct: 958  IVNGSLERVNAILMTALTSALGMLPLAIASGAGNEILQPLAIVVLGGLFTSTALTLLVIP 1017

Query: 818  PILLFIYDW 826
             +       
Sbjct: 1018 ALYAQFGKR 1026



 Score = 65.9 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 81/261 (31%), Gaps = 9/261 (3%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
             I+      + V    P+ L  V      + +              L+  +    D+  
Sbjct: 244 NSIEDLQQSVVKVQNGIPILLQDVAEVKIGVALKRGDASFNGQPAVVLMINKQPDVDTPT 303

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFK 689
            T+ +E V   +    P                  IR     +I   I + +I +     
Sbjct: 304 VTKAVEAVMASLRPTFPPDVEIVRTFRQSNFIDSAIRNVSGSLIQGIIIVSVILLLFLMN 363

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MR 745
           W  A   ++ + L +   L F   FG+  N   +  ++  IG  V+D +V  +     +R
Sbjct: 364 WRTAAITLSAIPLSLLVGLMFMKAFGLGINTMTLGGLVVAIGSVVDDAIVDMENCYRGLR 423

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMA 802
            N         F  + D S+   L     T +   +   P+    G     FA   +   
Sbjct: 424 NNQAQDNPKHPFLVVYDTSVEVRLAVIFST-VIIVVVFAPIFSLTGVEGRIFAPMGLAYL 482

Query: 803 FGIVVAASSSIFIAAPILLFI 823
             I  +   ++ ++  +   +
Sbjct: 483 LSICASTLVAMTLSPALCAIL 503


>gi|307637296|gb|ADN79746.1| Acriflavin resistance protein/ Multidrug efflux system CmeDEF
           [Helicobacter pylori 908]
 gi|325995886|gb|ADZ51291.1| Acriflavin resistance protein / Multidrug efflux system
           [Helicobacter pylori 2018]
 gi|325997481|gb|ADZ49689.1| putative efflux transporter [Helicobacter pylori 2017]
          Length = 1028

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/568 (11%), Positives = 153/568 (26%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGVMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVMNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +         I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQPIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKRIQAISPNY-EIRPFLDTTSYIRTSIEDVKFDLILG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFITVVLVFVGSLFVASKLGMDFM 540



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   V 
Sbjct: 799  NRQRSVTVLAQPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKLKR 1019



 Score = 39.7 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K+I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKRI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       ++ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|222087631|ref|YP_002546168.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
 gi|221725079|gb|ACM28235.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
          Length = 1035

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 63/517 (12%), Positives = 135/517 (26%), Gaps = 46/517 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  +G++           +   P+                  +V+   
Sbjct: 9   KRPVGTTLLAIGLVILGIVA-----YRFLPVASLPTVDLPT-------------IVVSAS 50

Query: 62  EDDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +              +              + I   F  SR  +  A  V  
Sbjct: 51  RPGADPASMAASVAAPLERHLGTIAGITQLTSVSSLGSSSIVAQFDLSRSVDGAAQDVQA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L    + L  D              + VL    +      A           + +I   
Sbjct: 111 ALNAAATDLPGDLPTLPSFRKINPAAAPVLI-LALTSDTVPASAIYDAADTIAVQRISQV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   Q   S      +    DP RL  +      +    V  +               S 
Sbjct: 170 DGVGQVSVSGADQPAVRVRLDPDRLSAMGLALDDVRTAIVNASTLGPAGSIDGSSAAFSI 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +                       +    +                 +   +   
Sbjct: 230 SLNSQLRTP--------------------EAYGRLVVRSGDGTAVRLSDIATVEPGVRNS 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           + +A  +   T++    L   L+          V          
Sbjct: 270 RSDAWFDGKPAVLLNITKEADANVIATVDGVKTLIPELQRLIPAGIHIAVLSDRTTTIHA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  + T      LV+ V+F  +        A  ++ L++  T A + L G ++   S+
Sbjct: 330 SVTDMQWTLVATICLVMAVVFTFLRRATPTFAAGVTVPLSLCGTFAAMWLFGLSIDNLSL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + + +G  VD  I++ E I            +   G  +   T+   +++ L A + L
Sbjct: 390 MALAVSVGFVVDDAIVMIENIYANLESGMKPMRAALEGAKQIGFTVVSISLSLLAAFIPL 449

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMM 511
           FF G   G   + F++T+G +I++S   ++++   + 
Sbjct: 450 FFMGGIVGRFFQTFSLTLGFTIVVSTLVSLTLTPMIC 486



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 77/204 (37%), Gaps = 7/204 (3%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             +    + +A    ++ +  ++  ++P                  +      ++ +   
Sbjct: 285 ITKEADANVIATVDGVKTLIPELQRLIPAGIHIAVLSDRTTTIHASVTDMQWTLVATICL 344

Query: 680 MLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           ++  +     +      A  T+ L +  T     LFG+  +  ++ A+   +G+ V+D +
Sbjct: 345 VMAVVFTFLRRATPTFAAGVTVPLSLCGTFAAMWLFGLSIDNLSLMALAVSVGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +  N+    + +       +   +     V  S++   + +P+   GG V     
Sbjct: 405 VMIENIYANL---ESGMKPMRAALEGAKQIGFTVVSISLSLLAAFIPLFFMGGIVGRFFQ 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPI 819
           +F++ + F IVV+   S+ +   I
Sbjct: 462 TFSLTLGFTIVVSTLVSLTLTPMI 485



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 61/154 (39%), Gaps = 6/154 (3%)

Query: 680  MLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++     L  I+TL       L    + G E  + A   ++ LIG    + +
Sbjct: 868  VYIVLGILYESLAHPLTIISTLPSAGLGALLALVISGTELTIIAFIGIILLIGLVKKNGI 927

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D            +   + I ++  +     + T++AA +  +P+ +    G  +  
Sbjct: 928  MMVD--FALQGERKLGLPSEEAIYQACLKRFRPILMTTLAALMGAIPLIIATGPGAELRR 985

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               I +  G+VV+   +++    I L +    ++
Sbjct: 986  PLGITIVGGLVVSQILTLYTTPIIYLMLAKLHSR 1019


>gi|194367463|ref|YP_002030073.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
 gi|194350267|gb|ACF53390.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
          Length = 1041

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 67/584 (11%), Positives = 153/584 (26%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +GL+  L   +        P                  H      
Sbjct: 10  RRPIGTALLAIGLFMVGLICYLRLGVSALPNIEIPVIF--------------VHASQSGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + + F      ++ A  V   +  
Sbjct: 56  DAATMASTVTAPLERHLGQLPGIDRMRSSSSEGSSLVFMIFQSGHNIDSAALDVQTAINS 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L       +       +  ++            A E           +I       
Sbjct: 116 AQADLPSGMGSPMYQKANPNDDPVIAIALTSQ--TQSADELYNVADSLLAQRIRQISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + +   +  L  T   +       N +             +     
Sbjct: 174 SVDIAGASTPAVRVDVNLRLMNALGLTADDLRNAVRAANVTSPTGFLSDGNTTTAIIAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                       +   +   R        N+           
Sbjct: 234 SVARAAD-------------------FADLVVKTQGDGRVIRLKDIANVYDGQQDAYQAA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR    P                S   
Sbjct: 275 WFDHKPAVVMYVFTRAGANIVETVDRVKAQIPTLRDYLQPGTTMTPYFDRTPTIRSSLHE 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++     ++ ++G TL   S+  +V
Sbjct: 335 VQITLLISLAMVVLTMALFLRRLAPTLIAAVTVPLSLAGAALVMYVMGFTLNNLSLLALV 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG  VD  I+V E I     +      +   G      TI     + +   + L F  
Sbjct: 395 IAIGFVVDDAIVVIENIMRHLDEGMPRMQAALTGAREIGFTIVSITASLVAVFIPLLFAS 454

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F +T+  +I++SM  ++++  A+    +     K+             + +
Sbjct: 455 GMMGAFFREFTVTLVAAIVVSMVVSLTLTPALCSRFLSAHDHKAAPSRFGRWLDAGHERM 514

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +     + +  ++L S+  + L+      +G   KG     
Sbjct: 515 LRIYTVFLDFSLRHALLLSLTPLILIGVTIFLFGAVKKGAFPPQ 558



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 80/246 (32%), Gaps = 10/246 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V       +  ++           ++Q    +    V +             ++ VK 
Sbjct: 244 LVVKTQGDGRVIRLKDIANVYDGQQDAYQAAWFDHKPAVVMYVFTRAGANIVETVDRVKA 303

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFA-LGA 696
           +I  +        T       +  +        + ++IS   +++ + +  +     L A
Sbjct: 304 QIPTLRDYLQPGTTMTPYFDRTPTIRSSLHEVQITLLISLAMVVLTMALFLRRLAPTLIA 363

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             T+ L +        + G   N  ++ A++  IG+ V+D +VV + +   M+     + 
Sbjct: 364 AVTVPLSLAGAALVMYVMGFTLNNLSLLALVIAIGFVVDDAIVVIENI---MRHLDEGMP 420

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
                     E     V  + +     +P+       G+    F + +   IVV+   S+
Sbjct: 421 RMQAALTGAREIGFTIVSITASLVAVFIPLLFASGMMGAFFREFTVTLVAAIVVSMVVSL 480

Query: 814 FIAAPI 819
            +   +
Sbjct: 481 TLTPAL 486



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 84/248 (33%), Gaps = 13/248 (5%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +       V ++ +   +  L    I+ +N     +    L        A+  +   V  
Sbjct: 776  VRARNGEMVPITAMAKQMPGLAPSQITHENQYTTMDLSYNLAPDVSMGEAKAIIDATVAG 835

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                                 S  LI      V  + + + + + + ++       I + 
Sbjct: 836  MRMPGDIRLADDAGFGFNSDPSDMLIL-----VFAAILTVYLVLGMLYESLIHPVTILS- 889

Query: 701  ILDITKTLGFFALFGI--EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             L         ALFG   E ++ ++ A++ LIG    + +++ D     +      ++ R
Sbjct: 890  TLPAAGVGALLALFGTNTELSVISMIALVLLIGIVKKNAIMMID--FALVAQREHGLAPR 947

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            +   ++        + T+M A ++ +P+A+    G  +     I M  G++ + S ++  
Sbjct: 948  EAAREASIVRFRPIMMTTMVAILAAVPLAIGLGEGSELRRPLGIAMIGGLLFSQSLTLLS 1007

Query: 816  AAPILLFI 823
               + +  
Sbjct: 1008 TPALYVIF 1015


>gi|256059008|ref|ZP_05449219.1| putative multidrug efflux protein [Brucella neotomae 5K33]
 gi|261322951|ref|ZP_05962148.1| RND family transporter [Brucella neotomae 5K33]
 gi|261298931|gb|EEY02428.1| RND family transporter [Brucella neotomae 5K33]
          Length = 1026

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 157/605 (25%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 90/247 (36%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRVPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPV 1002

Query: 819  ILLFIYD 825
            I + I  
Sbjct: 1003 IFVEIDR 1009


>gi|258592016|emb|CBE68321.1| Acriflavin resistance protein (fragment) [NC10 bacterium 'Dutch
           sediment']
          Length = 1100

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 77/581 (13%), Positives = 170/581 (29%), Gaps = 49/581 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   +  +GL+        +  LD FP                     L   
Sbjct: 9   KRPVFATMLIVSLVVMGLVS-----FRELGLDVFPKVDMPTVT---------ITTRLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  + +        +  + Q+++ ++F   R  +  A+ V   +  
Sbjct: 55  SPEEIESNITKRIEEAVNTINGIDELRSTTLEGQSQVFVTFVLERKIDEAANDVREKVAT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+     +   +         I+    +       A E +    ++   Q+   +   
Sbjct: 115 VVSEFPQGTEAPAIEKFDPDSAPILAIVVS---GKRSAREITELADKKIKRQLETVKDIG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    DP RL     +  ++       N    G     +          
Sbjct: 172 AVTLVGDRKREIQLVVDPHRLEAYNLSIQQIKTAVQRQNVEVPGGNITWQAREQGLRTLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHK--------------------PVVDISFDEMGARR 281
            +E   + S + +                                  V  +   + G   
Sbjct: 232 RIERAADFSDLIVADYKGAPVRIRDIGSALDGEEEPRTLSRLDGKSAVSLLVQKQSGTNT 291

Query: 282 FFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
              V                 +   V+       K  I+        G L A L      
Sbjct: 292 VAVVDLVKAKLQEIQATLPPDVEFQVVRDVSRFIKRSIAEVEEHLMLGGLLASLIVAFFI 351

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI--------VLFMIVLYGKWGLVADFS 393
            +L   E+  +G  LG  ++           V++        VLF+ +   +   +A  S
Sbjct: 352 GRLVRREQIVMGILLGGLTLAFFYGDPELLRVVVVGSIAVTLVLFLFIPRLRPAFIAAIS 411

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE-NRKNQSVFCSL 452
           I +++I T  ++ + G TL   ++ G+ L  G+ +D  I+V E I      + +    + 
Sbjct: 412 IPVSIIATFTIMRVAGFTLNNLTMLGLSLSTGIVIDDAIIVLENIFRHIEEEGRPPMEAA 471

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF---AITMGLSILISMFTAISIVRA 509
             G       +  + I+ ++  + + F GG   R +    +T   +IL+S+  A ++   
Sbjct: 472 VTGAKEIVLAVMATTISLVVIFLPVAFMGGLVGRFWNSFGLTATFAILVSLLVAFTLTPM 531

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
           +   +++           L                AR +  
Sbjct: 532 LSARMLKRVVNSVEPSKELGEGHGGHRQHDQGSKAARVYAF 572



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 58/153 (37%), Gaps = 6/153 (3%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           V V+ S    L+      +   A  A  ++ + I  T     + G   N   +  +    
Sbjct: 383 VVVVGSIAVTLVLFLFIPRLRPAFIAAISIPVSIIATFTIMRVAGFTLNNLTMLGLSLST 442

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  ++D ++V + +     +        +       E +   + T+++  +  LP+A  G
Sbjct: 443 GIVIDDAIIVLENIF--RHIEEEGRPPMEAAVTGAKEIVLAVMATTISLVVIFLPVAFMG 500

Query: 791 GSVIG---SFAIPMAFGIVVAASSSIFIAAPIL 820
           G V     SF +   F I+V+   + F   P+L
Sbjct: 501 GLVGRFWNSFGLTATFAILVSLLVA-FTLTPML 532


>gi|256015580|ref|YP_003105589.1| putative multidrug efflux protein [Brucella microti CCM 4915]
 gi|255998240|gb|ACU49927.1| putative multidrug efflux protein [Brucella microti CCM 4915]
          Length = 1026

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 157/605 (25%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 90/247 (36%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRVPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPV 1002

Query: 819  ILLFIYD 825
            I + I  
Sbjct: 1003 IFVEIDR 1009


>gi|296272192|ref|YP_003654823.1| protein-export membrane protein SecD [Arcobacter nitrofigilis DSM
           7299]
 gi|296096367|gb|ADG92317.1| protein-export membrane protein SecD [Arcobacter nitrofigilis DSM
           7299]
          Length = 522

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 144/485 (29%), Positives = 260/485 (53%), Gaps = 26/485 (5%)

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           V   + V   ++  +  ++ +   E I +  +    + +T +  D    + + D +    
Sbjct: 51  VKTQEAVVSKIKSIAATVKYYTDDEEILIEDLSINPDSVTFTVLDPDEVKRVDDMLKK-- 108

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                      K  ++  + +    + L+   I      A+ Q++E IR R+DQ G++E 
Sbjct: 109 ----------IKGLVISKSQDNNYELTLTPQEIALTKDQAVSQAVETIRNRLDQFGLAEP 158

Query: 180 TIQRLGSHRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVLP--------NNSKKGFMF 228
           T+ R G   I+++LPG +   D    R+L+   A +    V           +  +   +
Sbjct: 159 TVIRQGKTDIVVELPGIKTQADEQAARELISKPANLELMAVDEDRADQVYTMSGSEASQY 218

Query: 229 GVRFLRD--SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
           G   L D      +YLV++   ++G  +  A   F  K+++ +++ + + +GA+ F + T
Sbjct: 219 GDIILEDAKDPAKKYLVKEIPILNGSQVTDAQVAF-DKSNQAIINFTLNSIGAKVFGDFT 277

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
             ++GK LA+VLDG+V +AP I + I  G  QISG F++  AG +A  LR+G+LP  + +
Sbjct: 278 AKSVGKRLAIVLDGKVYSAPNIRERIGGGSGQISGGFSVVEAGNVAIALRSGALPASVEL 337

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +E+R+VG  LG+DSI     A++AG  L+V+FMIV YG  G++A+ ++  N+ + +A+++
Sbjct: 338 LEKRSVGPSLGADSIKASMIALIAGFALVVVFMIVYYGMAGVIANVALVTNIFIIIAIMA 397

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           + GATLTLP +AGIVL +G+AVD+N+++ ERI+E  R   S+  +++ G+S A   I D+
Sbjct: 398 MFGATLTLPGMAGIVLTVGMAVDANVIITERIKELLRNKVSITKAVEDGYSNAMRAILDA 457

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           N+T L+ +V+L+ +G G ++GFAIT+ + IL SM TAI     +   ++     +     
Sbjct: 458 NVTTLLVSVILYVYGTGPIKGFAITISIGILASMLTAILGTHGIYESLLPKMNREKNLRK 517

Query: 527 PLSRF 531
                
Sbjct: 518 WFGMK 522



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 81/178 (45%), Gaps = 4/178 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I+  ++ +I     +++++ + +     + A   L+ +I   +   A+FG
Sbjct: 342 SVGPSLGADSIKASMIALIAGFALVVVFMIVYYGM-AGVIANVALVTNIFIIIAIMAMFG 400

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++ +R+++ ++     +S    ++   +  +   +  
Sbjct: 401 ATLTLPGMAGIVLTVGMAVDANVIITERIKELLR---NKVSITKAVEDGYSNAMRAILDA 457

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   +  + + V+G   I  FAI ++ GI+ +  ++I     I   +     +   +
Sbjct: 458 NVTTLLVSVILYVYGTGPIKGFAITISIGILASMLTAILGTHGIYESLLPKMNREKNL 515


>gi|294635404|ref|ZP_06713896.1| multidrug RND efflux transporter, permease protein MdtB
           [Edwardsiella tarda ATCC 23685]
 gi|291091227|gb|EFE23788.1| multidrug RND efflux transporter, permease protein MdtB
           [Edwardsiella tarda ATCC 23685]
          Length = 959

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 50/450 (11%), Positives = 125/450 (27%), Gaps = 24/450 (5%)

Query: 80  FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
            +              + ITL F  S   +    +V   +    + L  D     + +  
Sbjct: 1   QMSGLQQMSSQSSGGASVITLQFRLSLALDVAEQEVQAAINAATNLLPNDLPYPPIYSKV 60

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
                 +L+   +        +    +  +   +I           +      +    + 
Sbjct: 61  NPADPPILT-LAVTSDALSLPQVEDLVETRLSQKIAQVGGVGLVTLAGGQRPAVRVRLNS 119

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           +       ++  +       N +             +      +                
Sbjct: 120 AAAAAYGLSSEAIRSAIASANVNSPKGSLDGPTRAITLNANDQLRSP------------- 166

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
                  +    +          +      + +                       +   
Sbjct: 167 -------QEYQALIVAYRNGAPVYLRDIATVEQGAENSQLAAWSDNHPAIILNVQRQPGA 219

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +   T +    L   LR          V          S S  +    +   LV++V+++
Sbjct: 220 NVIATADAVLALLPQLRTALPAAVTLSVLNDRTQTIRASVSDVRHELLLAIALVVMVIYL 279

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
            +      L+   ++ L+++ T A++  LG ++   ++  + +  G  VD  I+V E I 
Sbjct: 280 FLRNLPATLIPGVAVPLSLVGTFAVMYFLGFSINNLTLMALTIATGFVVDDAIVVIENIE 339

Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSI 496
                 +    +   G      TI     + +   + L F G   G   R FA+T+ ++I
Sbjct: 340 RHLENGEPPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIIGRLFREFAVTLAVAI 399

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           LIS   ++++   M   ++   +++  +  
Sbjct: 400 LISALVSLTLTPMMCARLLSQARLRRQNRF 429



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 58/148 (39%), Gaps = 7/148 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+IY+++R      L     + L +  T       G   N   + A+    G+
Sbjct: 268 LAIALVVMVIYLFLR-NLPATLIPGVAVPLSLVGTFAVMYFLGFSINNLTLMALTIATGF 326

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D +VV + +    +             K   E     +  + +    ++P+   G  
Sbjct: 327 VVDDAIVVIENI---ERHLENGEPPLTAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDI 383

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            G +   FA+ +A  I+++A  S+ +  
Sbjct: 384 IGRLFREFAVTLAVAILISALVSLTLTP 411



 Score = 39.3 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 82/223 (36%), Gaps = 6/223 (2%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           ++     L +   +     + +  +      I   + I           +  +   +  +
Sbjct: 730 DQFPSATLSFNVPEGYTLEQAIAEIDAARQAIGMPADITLHFQGAALAFQSALSSTLWLI 789

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + + +AM I + I ++ +   +  ++TL       L    L+G E ++ A+  ++ LIG 
Sbjct: 790 LAAIVAMYIVLGILYESFIHPITILSTLPSAGVGALLALQLYGQELDVIAIIGIILLIGI 849

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
              + +++ D            ++ RD I ++        + T++AA +  LP+      
Sbjct: 850 VKKNAIMMID--FALAAERQQGMAPRDAIYQACLLRFRPILMTTLAALLGALPLMFSQGV 907

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G  +     I M  G++V+   ++F    I L          R
Sbjct: 908 GAELRQPLGIGMVGGLIVSQVLTLFTTPVIYLAFDRLARHPRR 950


>gi|149187490|ref|ZP_01865788.1| putative multidrug efflux membrane fusion protein [Vibrio shilonii
           AK1]
 gi|148839026|gb|EDL55965.1| putative multidrug efflux membrane fusion protein [Vibrio shilonii
           AK1]
          Length = 968

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 59/505 (11%), Positives = 141/505 (27%), Gaps = 30/505 (5%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
           ++    D +   +    ++  + +        +        + + F      +   + V 
Sbjct: 1   MDGASADVMAKSVAPEIEKQVNGVSGMEYMKSTSGADGTYTLEVVFESGTDSDKAVNLVQ 60

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +     +L  D  +N +         ++          + AI+ S        ++I  
Sbjct: 61  NRVNLALPELPGDVMRNGVKVEKLSNGLMLGISITDPSGGASAIDISAFSGGPLKEKIQR 120

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +          +    +P +++        ++      N            L   
Sbjct: 121 VNGVSKVDVLGEKKYSIRVWLNPDKMKYYSINVGDINDAIATQNKIASAGSLVDDKLEFP 180

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +                       +    +   +   +  +     NI     +
Sbjct: 181 ITVNGGLATPE-------------------EFGDIVVRSDELGKTIYLKDVANIELGSEI 221

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                                + +     +    L               V         
Sbjct: 222 YTANAYGENANGTVLFIYKTPEANAMSVAKEIKALLEQ-----PNPYQIKVVYDATTFID 276

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G+      T  +   +V +V  + +   +  L+   +I +++I T A++S LG  + + S
Sbjct: 277 GAIYSVLETLVLAVAIVSLVTLIFMQNFRLTLITVTAIPVSLIGTFAVMSALGIQVNIIS 336

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIAT 474
           + G+V+ IG+ VD+ I+V E    +  +N   SV  ++       +S I  S +  L   
Sbjct: 337 MFGLVMAIGIVVDAAIIVIENAEHQLHENPELSVKQAVSKALDITFSPIIASMLVLLAVF 396

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
               F     G     F I +  S+++S   A+++  A+    ++  K   I  +     
Sbjct: 397 TPSLFIPGMAGTIYSEFGIVLCASVVVSTLVALTLTPALCSLFMKPPKKNIIAKSVEWVI 456

Query: 532 FLIPDCIAIQFMRARFWGVGISILF 556
                  A     A    +   +L 
Sbjct: 457 TQKIRAFAGLAWTATRLPLITILLL 481



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 97/286 (33%), Gaps = 11/286 (3%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S    +                 +    + V ++       ++         +I   N
Sbjct: 166 IASAGSLVDDKLEFPITVNGGLATPEEFGDIVVRSDELGKTIYLKDVANIELGSEIYTAN 225

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR--ELIRK 668
             GE      L            V + +K  + +  P       +           ++  
Sbjct: 226 AYGENANGTVLFIYKTPEANAMSVAKEIKALLEQPNPYQIKVVYDATTFIDGAIYSVLET 285

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ V I ++  LI++     +   L  +T + + +  T    +  GI+ N+ ++  ++ 
Sbjct: 286 LVLAVAIVSLVTLIFMQ---NFRLTLITVTAIPVSLIGTFAVMSALGIQVNIISMFGLVM 342

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL--PM 786
            IG  V+  ++V +   ++       +S +  + K+++ T    +  SM   ++V    +
Sbjct: 343 AIGIVVDAAIIVIENA-EHQLHENPELSVKQAVSKALDITFSPII-ASMLVLLAVFTPSL 400

Query: 787 AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            + G  G++   F I +   +VV+   ++ +   +         KN
Sbjct: 401 FIPGMAGTIYSEFGIVLCASVVVSTLVALTLTPALCSLFMKPPKKN 446



 Score = 46.2 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 57/163 (34%), Gaps = 5/163 (3%)

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            IV  +   +  L+ +     W   L  + T+   I   +          N+    A + 
Sbjct: 801 AIVMGLAMLVTFLVLVAQYESWLIPLAIMLTVPTAIIGIVEGVIHIQGNINILTQLAAIL 860

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           LIG +V + +++ +  +        + + ++   +++         T+ +  + ++P+ +
Sbjct: 861 LIGMTVRNAILIVEFAK--TLRDDNNFTIKEAAVQALRLRARAVFMTAFSFGVGLVPLML 918

Query: 789 ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               G     +       GIV A      +A+   + I   R 
Sbjct: 919 ANAVGSGGQQALGWASFGGIVSATFIGCIMASVFFVVIQQIRE 961


>gi|312171270|emb|CBX79529.1| Cation/multidrug efflux pump mdtC [Erwinia amylovora ATCC BAA-2158]
          Length = 1032

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 66/575 (11%), Positives = 159/575 (27%), Gaps = 39/575 (6%)

Query: 56  LVLEVDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           +++           +        +     +           Q  + + L F+  R     
Sbjct: 45  ILVTASLPGASPETMAATVATPLERALGQIAGISEMTSQSSQSSSTLILQFSLDRDINGA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
           A  V   +    S L                 + ++    +      + E       +  
Sbjct: 105 ARDVQAGINAARSLLPGSMPSLPTYRKANPSDAPIVM-LALSSTTRTSAELYDLAESKIQ 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            +I       Q       L  +  +  P +L Q   +   +         +K        
Sbjct: 164 QRISQVNGVGQVSLRGSALPGVRIDPQPQQLSQYGISLDTLREAIANSTTNKPKG----- 218

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGA-TANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                            +SG   +    +N      +   D+       R         +
Sbjct: 219 ----------------MLSGDRQSWMVDSNGQRDRAEQFRDLVVSYRDGRAIRLRDVATV 262

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
              +    +              +  A  +   TI+    L  +            +   
Sbjct: 263 SDAVEDKYNVGYYNGVPSVMIGVTRSAGANMLETIDRIKALMPLFEKQLPADMKLAIVVD 322

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                  S    + T  +   LV+ V+F+ +   +  ++   ++ L++  T A++ LL  
Sbjct: 323 RAPNVRASLYDTEETLLVATLLVIGVVFLFLRDIRAVVIPALALPLSLTGTCAVMYLLDY 382

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           +L   S+  +++  G  VD  I+V E I        S   +   G      T+    ++ 
Sbjct: 383 SLDNLSLMALIIATGFVVDDAIVVLENITRHIEAGLSPVRAAIKGAKEVSFTVLSMTLSL 442

Query: 471 LIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           +   + +   G   G   R FA+T+ +S++IS+  ++S+   +   +++ +       +P
Sbjct: 443 VAVFIPILLMGSIVGRLFREFAVTLTVSLIISLLVSLSLTPMLCSRLLKRRSPPERRPHP 502

Query: 528 LSRFFLIPDCI---------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            SR+                       R     + +   +            +     G 
Sbjct: 503 FSRWIEQGLNRLLARYATALNWVMRHQRLTLFSLMLTVLLNIFLYSVVQKGFFPNQDTGL 562

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +   + A++ +    +   ++       +    DG
Sbjct: 563 LMGMMRADQNISFQAMEPKMQQFASLIAADPAVDG 597



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/253 (11%), Positives = 80/253 (31%), Gaps = 11/253 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +S    +  ++   +       G     V             R+  ++    
Sbjct: 254 IRLRDVATVSDAVEDKYNVGYYNGVPSVMIG-----VTRSAGANMLETIDRIKALMPLFE 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            ++     +       P +   L       ++ + + + +           +     L L
Sbjct: 309 KQLPADMKLAIVVDRAPNVRASLYDTEETLLVATLLVIGVVFLFLRDIRAVVIPALALPL 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +T T     L     +  ++ A++   G+ V+D +VV + +    +     +S      
Sbjct: 369 SLTGTCAVMYLLDYSLDNLSLMALIIATGFVVDDAIVVLENI---TRHIEAGLSPVRAAI 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K   E     +  +++     +P+ + G   G +   FA+ +   ++++   S+ +   +
Sbjct: 426 KGAKEVSFTVLSMTLSLVAVFIPILLMGSIVGRLFREFAVTLTVSLIISLLVSLSLTPML 485

Query: 820 LLFIYDWRAKNAR 832
              +   R+   R
Sbjct: 486 CSRLLKRRSPPER 498



 Score = 42.4 bits (97), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 41/87 (47%), Gaps = 4/87 (4%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
               T  ++ +  I ++  +     + T++AAF   LP+A+  G    +     + +A G+
Sbjct: 937  AERTQGMTPQQAITQACLQRFRPIMMTTLAAFFGALPLALGSGGDADLRSPLGLAIAGGL 996

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   ++F   P++    D  ++ A+
Sbjct: 997  MLSQLLTLF-TTPVVYLYLDRVSRAAK 1022


>gi|254705705|ref|ZP_05167533.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella pinnipedialis M163/99/10]
 gi|254715662|ref|ZP_05177473.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella ceti M13/05/1]
 gi|256157515|ref|ZP_05455433.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella ceti M490/95/1]
 gi|256253508|ref|ZP_05459044.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella ceti B1/94]
 gi|261217411|ref|ZP_05931692.1| RND family transporter [Brucella ceti M13/05/1]
 gi|261220639|ref|ZP_05934920.1| RND family transporter [Brucella ceti B1/94]
 gi|261313125|ref|ZP_05952322.1| RND family transporter [Brucella pinnipedialis M163/99/10]
 gi|265996013|ref|ZP_06108570.1| RND family transporter [Brucella ceti M490/95/1]
 gi|260919223|gb|EEX85876.1| RND family transporter [Brucella ceti B1/94]
 gi|260922500|gb|EEX89068.1| RND family transporter [Brucella ceti M13/05/1]
 gi|261302151|gb|EEY05648.1| RND family transporter [Brucella pinnipedialis M163/99/10]
 gi|262550310|gb|EEZ06471.1| RND family transporter [Brucella ceti M490/95/1]
          Length = 1026

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 157/605 (25%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 90/247 (36%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRVPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPM 1002

Query: 819  ILLFIYD 825
            I + I  
Sbjct: 1003 IFVEIDR 1009


>gi|228476180|ref|ZP_04060884.1| mmpl domain protein [Staphylococcus hominis SK119]
 gi|314935348|ref|ZP_07842701.1| membrane protein YdfJ [Staphylococcus hominis subsp. hominis C80]
 gi|228269729|gb|EEK11227.1| mmpl domain protein [Staphylococcus hominis SK119]
 gi|313656683|gb|EFS20422.1| membrane protein YdfJ [Staphylococcus hominis subsp. hominis C80]
          Length = 879

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 78/513 (15%), Positives = 169/513 (32%), Gaps = 58/513 (11%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGI 424
           +   +  ++L +         +   S  + +  ++ +++LL     +P+      +++G+
Sbjct: 181 VGIVVAFVILLITFGSLIAAGMPIISAIIGLGSSVGIIALLTYIFDIPNFTLTLAVMIGL 240

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            + +D ++ +  R +E  +K      ++      A S +  + +T +IA   L   G   
Sbjct: 241 AVGIDYSLFILFRFKELKKKGVDTVEAIATAVGTAGSAVIFAGLTVMIAVCGLSLVGIDF 300

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           +        +S+L ++  A++++ A++    +  K+K                  +    
Sbjct: 301 LSVMGFASAISVLFAVLAALTLLPALISIFHKSIKIKDKPSKSKDPKDHPWAKFIVGKPV 360

Query: 545 ARFWGVGISILFSICSICLLFT--------------------HGLNYGIDFKGGIQLGVL 584
                  I ++ +   +  +                         N+G  + G I + V 
Sbjct: 361 IAVIVSLIILILAAIPVSGMRLGIPDDSLKPTDSSEYKAYKLISDNFGEGYNGQIVMLVN 420

Query: 585 ANR-------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                       DL+ +RS++E +   D   +    + N        P           +
Sbjct: 421 TKDGGSKSTIERDLNNMRSDVEDIDNVDTVSKAQLTDNNNYALFTIIPEKGPNSQSTENL 480

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKG---------IVGVIISAIAMLIYIWIRF 688
           V              + +      S   I              GVI+    +L+ I  R 
Sbjct: 481 VYDLRDYHSQAQEKYDYDTEISGQSVINIDMSEKLNNAIPVFAGVIVVLAFVLLMIVFR- 539

Query: 689 KWYFALGAITTLILDITKTLGFF----------ALFGIEFNLTAVA-----AVLTLIGYS 733
                L A+   IL +  TLGF           +LFGIE     +A      +  L G +
Sbjct: 540 SILVPLKAVLGFILSLMATLGFTTLVIQHGFMGSLFGIENTGPLLAFLPVVTIGLLFGLA 599

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           ++ ++ +  R+ +    Y+ +      I   I E+    V  ++  F   +       S 
Sbjct: 600 IDYELFLMTRVHEE---YSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFVFQDDSA 656

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           I S  I + FG++  A        P L  ++  
Sbjct: 657 IKSMGIALGFGVLFDAFVVRMTLIPALTKLFGK 689



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 78/222 (35%), Gaps = 14/222 (6%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++      ++++     S Q  D     +  + Y    +  +     ++ K++ ++    
Sbjct: 99  NIRQNDDYIQNISNPYDSGQVNDEGDTAIANVSYVVPQTGLKDSSKHIIDKELKDVTDNH 158

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA-----LGAITTLILDI 704
            +Q  +  G  ++ E+   G    I+  +   + + I F    A     + AI  L   +
Sbjct: 159 NVQIEKAQGSSMNAEI---GGTSEIVGIVVAFVILLITFGSLIAAGMPIISAIIGLGSSV 215

Query: 705 TKTLGFFALFGIE-FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                   +F I  F LT    +   +G  ++  + +  R ++   L    +   + I  
Sbjct: 216 GIIALLTYIFDIPNFTLTLAVMIGLAVG--IDYSLFILFRFKE---LKKKGVDTVEAIAT 270

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           ++       ++  +   I+V  +++ G   +       A  +
Sbjct: 271 AVGTAGSAVIFAGLTVMIAVCGLSLVGIDFLSVMGFASAISV 312


>gi|308051348|ref|YP_003914914.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
 gi|307633538|gb|ADN77840.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
          Length = 1022

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 75/673 (11%), Positives = 190/673 (28%), Gaps = 42/673 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L  ++   G+   +        +  +P  M   +I+                
Sbjct: 8   RRPVLAVVLNVLLLVFGVRALM-----DLQVREYPD-MEIGQIN--------VTTTYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+     E  +  +       + R   +++ +             ++   L  
Sbjct: 54  NAELVQGFVTTPIQEAIASTEGIDYIKATSRASFSQLEVYLQLGYDANTAMAEMLTKLNE 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D  + ++   T    +I+      +      ++ +  + R    ++  ++   
Sbjct: 114 VKGRLPTDIDEPIIAKETAGGGAIMYLAYTSEN--MSGVQVTDYLRRVVQPKLTEADGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP R+R    +   ++      N                     
Sbjct: 172 EAEIIGEQQFAMRIWLDPVRMRANGVSADDINRALASNNFQSAAGEIRDSLTVTPVRAST 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D                     +   +I+    G +         +           
Sbjct: 232 SLQD--------------------VESFRNITVKTDGQQVVKLQDVARVELASKSDKVIV 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V T         +     +     +    +   +     P     +   +      S   
Sbjct: 272 VYTGKPAVYIGINTTPDANPLDVAKDVREILPNIARDLPPGMEQHLSHDSTEYIEESIYE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   ++ L+++     +  +G +L L ++  +V
Sbjct: 332 VVKTLGEAVVIVIMVVFLFLGSLRSVLIPIVTVPLSLVGVCLFMMGMGFSLNLLTLLAMV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + I L VD  I+V E +     +  S   +  +G       +    IT       + F G
Sbjct: 392 MAISLVVDDAIVVVENVHRHLEEGLSPVRAAVIGAREIAMPVIAMTITLAAVYAPIGFMG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI---P 535
              G     FA T+  S+LIS F A+++   M   ++  + ++   ++ L   F      
Sbjct: 452 GLTGSLFSEFAFTLAGSVLISGFIALTLSPVMCAKLLNKQALEGKFVHWLDVNFGRLKDG 511

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               ++ +   + G  +     +              +                D + V 
Sbjct: 512 YHSLLEHIVRDYKGPILGAAVLLLFAIGAMFMLTRSELAPTEDRGFIFNIATGPDNANVN 571

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + E  +      ++    +   +   Y   +      VL+   ++    + +  I    
Sbjct: 572 YSFEYAKQFQKMAESLPEYEQTFMFAGYPTENQFMSGMVLKPWSERERTQMEVQPILQNM 631

Query: 656 IVGPKISRELIRK 668
           +            
Sbjct: 632 VKSIPGMDVFSVN 644



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/266 (12%), Positives = 87/266 (32%), Gaps = 7/266 (2%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
             ++    I +     + V L  V     + +   +          ++        + + 
Sbjct: 234 QDVESFRNITVKTDGQQVVKLQDVARVELASKSDKVIVVYTGKPAVYIGINTTPDANPLD 293

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK 689
             + +  +   I   +P    Q+      +   E I + +  +     I +++       
Sbjct: 294 VAKDVREILPNIARDLPPGMEQHLSHDSTEYIEESIYEVVKTLGEAVVIVIMVVFLFLGS 353

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  I T+ L +     F    G   NL  + A++  I   V+D +VV + +    +
Sbjct: 354 LRSVLIPIVTVPLSLVGVCLFMMGMGFSLNLLTLLAMVMAISLVVDDAIVVVENVH---R 410

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                +S          E     +  ++       P+   G   GS+   FA  +A  ++
Sbjct: 411 HLEEGLSPVRAAVIGAREIAMPVIAMTITLAAVYAPIGFMGGLTGSLFSEFAFTLAGSVL 470

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
           ++   ++ ++  +   + + +A   +
Sbjct: 471 ISGFIALTLSPVMCAKLLNKQALEGK 496



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 76/246 (30%), Gaps = 11/246 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + V LS V    E +    ++                         + L     +I 
Sbjct: 768  ESGQQVPLSTVVKITEEVIPNALTQFQQLNSATIEAMPMPGSATIGDAHQFLSSKLLEIA 827

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                            +    L         ++ + + + +  +F+ W   +  + T+ L
Sbjct: 828  PSGYAYDFGGQSRQYEQEGSALYVT----FALALVVIFLVLAAQFESWRDPVVVLVTVPL 883

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   +    L     N+     ++TL+G      +++ +      +L  T +     + 
Sbjct: 884  SIFGAMIPLFLGVATLNIYTQVGLITLVGLISKHGILIVEFAN---QLQRTGLDKAAAVI 940

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             S +  L   + T+ A  + V+P+ +    G     +  + +  G+ V    ++F+   +
Sbjct: 941  ASASLRLRPILMTTAAMVLGVMPLVLADGAGAVSRFNIGLVITVGLSVGTFFTLFVVPVM 1000

Query: 820  LLFIYD 825
                  
Sbjct: 1001 YTLFAK 1006


>gi|149374540|ref|ZP_01892314.1| Cation/multidrug efflux pump [Marinobacter algicola DG893]
 gi|149361243|gb|EDM49693.1| Cation/multidrug efflux pump [Marinobacter algicola DG893]
          Length = 1028

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 69/671 (10%), Positives = 167/671 (24%), Gaps = 48/671 (7%)

Query: 1   MRNNPWL-------VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGG 53
           MR   +         +L      +G + A          +  P                 
Sbjct: 1   MRTLIFAALDRSRTTLLTLAFLILGGIAA----FQTIPKEANPDITIPMIY--------- 47

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
             + LE    +     L    ++    L+       +  +    + L F      +    
Sbjct: 48  VSMTLEGISPEDGERLLIRPMEQELRSLEGVKEMRGTASEGHASVMLEFDAGFDPDIALQ 107

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    SKL  +  +  +         ++    +        +     + R+  D 
Sbjct: 108 DVREKVDTARSKLPQEADEPRVNEINVALFPVMSVGLSGPLSERELV----TVARRLQDA 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I      ++          L    DP  L        +++                    
Sbjct: 164 IEGIPEVLEVDIGGDREDLLEIVVDPQVLESYGVDFDQLATLVT---------------- 207

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                N  LV      +G            ++ + V+ +     G           + + 
Sbjct: 208 ----RNNQLVAAGSLDTGAGRMTMKVPGVIESVEDVMAMPVKVGGDTVVTFGDVAMLQRT 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                    +          S +   +   T+E    L                     G
Sbjct: 264 FKDPRGFARINGEPALVLEISKRTGANIIETVEKVKALIESAGPQMPDELEVRYIMDQSG 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                 S           LV++++   +      L+   +I    +  + ++  +G TL 
Sbjct: 324 EVRDILSDLLNNVLTAIVLVIVLIIAAMGPR-SALLVGLTIPGAFLTGILVIWGMGFTLN 382

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           +  +  ++L  G+ VD  I+V+E       + QSV  +     SR    I  S  T L  
Sbjct: 383 IVVLFSLILVAGMLVDGAIVVSELADRNLSEGQSVKTAWGEAASRMAWPIIASTATTLAV 442

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F+    G  +     T+ + +  S+  A+  +  +       ++ ++     ++ 
Sbjct: 443 FIPLLFWPGVVGEFMSFLPTTVIICLTASLAMALVFLPVLGSISGGKRRPQAAISGRMTD 502

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            +       +        GV   ++    +          +        Q+ + A   + 
Sbjct: 503 VYRGVLGRLLAKPGFTLLGVLGVVVVIYAAYGKFNHGVEFFPSVEPDSAQVHIRARGDLS 562

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +    + +  ++                +              +                
Sbjct: 563 VQERDAIVRQVEQRLQGMPEVKALYARSMINPGNQMAPDVIGVLQFQFTDWFERRPATQI 622

Query: 651 IQNTEIVGPKI 661
           +++   +   I
Sbjct: 623 LEDFRSLTADI 633



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 83/264 (31%), Gaps = 18/264 (6%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + V  +  V    V     + +      +        L   +    + +     ++ +
Sbjct: 242 MPVKVGGDTVVTFGDVAMLQRTFKDPRGFARINGEPALVLEISKRTGANIIETVEKVKAL 301

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            +     +P        +      R+++   +  V+ + + +++ I        AL  + 
Sbjct: 302 IESAGPQMPDELEVRYIMDQSGEVRDILSDLLNNVLTAIVLVIVLIIAAMGPRSAL--LV 359

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLI--GYSVNDKVVVYDRMRKNMKLYTTSIS 756
            L +      G   ++G+ F L  V     ++  G  V+  +VV +       L   ++S
Sbjct: 360 GLTIPGAFLTGILVIWGMGFTLNIVVLFSLILVAGMLVDGAIVVSE-------LADRNLS 412

Query: 757 FRDLIDKSINETLGR----SVYTSMAAFISVLPMAVWGGSVIGSFAI---PMAFGIVVAA 809
               +  +  E   R     + ++       +P+  W G V    +     +   +  + 
Sbjct: 413 EGQSVKTAWGEAASRMAWPIIASTATTLAVFIPLLFWPGVVGEFMSFLPTTVIICLTASL 472

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
           + ++     +       R   A I
Sbjct: 473 AMALVFLPVLGSISGGKRRPQAAI 496



 Score = 37.7 bits (85), Expect = 7.9,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 75/216 (34%), Gaps = 5/216 (2%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +++   Q            V  S    L  GD        +    + ++           
Sbjct: 749 NWRELDQFQRQTINTSRGQVPLSEFVELAPGDKIGSITRVDGQRTITIKSDIEPGRRADE 808

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           +L  +++++ E     +++       +            V I+ +  LI +      Y  
Sbjct: 809 LLMTLQQQMPETPEGVSVRFAGENEDQQQASNFLASAFLVAIALML-LILVTQFNSLYQT 867

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAV-AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           +  ++ ++L     L    L G  F +  V   ++ L G  VN+ +++ D      ++  
Sbjct: 868 MLILSAIVLSTAGVLLGLLLNGQSFGIVMVGMGIIALAGIVVNNNIILIDTYN---QMRQ 924

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           + ++  D   ++    L   + T++   + ++PM +
Sbjct: 925 SGMAAFDAALETGCLRLRPVLLTAITTILGLMPMVL 960


>gi|78049523|ref|YP_365698.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037953|emb|CAJ25698.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1046

 Score =  140 bits (353), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 63/544 (11%), Positives = 145/544 (26%), Gaps = 38/544 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPIIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + L F  SR  ++ A  +   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLHGIDRMRSSSSESSSLVVLVFQSSRNIDSAAQDIQTAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      +     A E           ++       
Sbjct: 115 SQSDLPSGLGTPMYSKANPNDDPVIAIALTSE--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +  +  
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIISND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVSKAAD-------------------FAQLAISTQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR+   P                S   
Sbjct: 274 WFDGKPAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQATLMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E +     +  S   +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDDAIVVIENVMRHLDEGMSRLDAALAGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + + +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSPHTEPEKPGRFGAWLDRMHERM 513

Query: 539 AIQF 542
              +
Sbjct: 514 LRVY 517



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 338 LMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           + V+D +VV + +   M+     +S  D       E +G ++ +  A+ ++V    ++  
Sbjct: 398 FVVDDAIVVIENV---MRHLDEGMSRLDAALAGARE-IGFTIVSITASLVAVFIPMLFAS 453

Query: 792 SVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
            +I      F + +   IVV+   S+ +   +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPAL 485


>gi|158424054|ref|YP_001525346.1| cation/multidrug efflux pump [Azorhizobium caulinodans ORS 571]
 gi|158330943|dbj|BAF88428.1| cation/multidrug efflux pump [Azorhizobium caulinodans ORS 571]
          Length = 1031

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 69/686 (10%), Positives = 172/686 (25%), Gaps = 51/686 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L + +  +G L      L       +P+                         
Sbjct: 10  RPVATSLLMAAVLLVGALAFRFLPLSALPEVDYPTIA--------------VRTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +              + ITL F      +    +V   +   
Sbjct: 56  PEVMTSAVTAPLERQLGQMANLKQMSSVSSAGASIITLQFGLDLTLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +L+   +                +   ++   +    
Sbjct: 116 GNLLPSDLPAPPIYAKVNPADAPILT-LAVTSKTLSPTALEDIADTRVAQKLSQIQGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    + S L         +       N +     F       S      
Sbjct: 175 VSLGGGQRPAVRIRANLSALAAYGLNIDDLRTSISNANVNSPKGNFDGPMRAYSVTANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++D                         D+                 +            
Sbjct: 235 IKDPAV--------------------YRDLVIAYRKGAPVRLSQVAEVIDGAENDKLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    +     +   L A         +          S    
Sbjct: 275 MNTTPAIILNIQRQPGANVIAVVNEIKAILPELTANLPSAVQVDILTDRTTTIRASVLDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        LV++V+F+ +      ++   S+ L+++ T A++ L G +L   S+  + +
Sbjct: 335 EIELVFAVALVVLVIFLFLRNLPATVIPSLSVPLSIVGTFAVMYLAGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     +    + +   G ++   TI    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMIENIARYVEEGMEPYEAALKGSAQIGFTIVSLTVSLIAVLIPLLFMAD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------------IDIN 526
             G   R FAIT+ ++ILIS   ++++V  +   +++    +              I   
Sbjct: 455 VIGRLFREFAITLSVTILISAVVSLTLVPMLCARMLKAAPHRPAEASRRIGWFDRLIAAY 514

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 ++   I    +      + +++   I                 +    +   A 
Sbjct: 515 GRMLKVVLRHQITTLMVALGTLALTVALYVVIPKGFFPVQDTGLIQGVTEASQSISFSAM 574

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                ++V   L+   + +++        N  +           +      V   I E+ 
Sbjct: 575 AERQQALVTELLKDPNVENVTSFIGADGTNTTLNSGRLQIALKPRDDRDMGVLDVIRELN 634

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVG 672
                     +  +  ++L     V 
Sbjct: 635 ARVANVRGISLYMQPVQDLTVDATVA 660



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/140 (17%), Positives = 53/140 (37%), Gaps = 10/140 (7%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    ++ L I  T     L G   N  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLRNLPATVIPSLSVPLSIVGTFAVMYLAGFSLNNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA-FISVLPMAVWGGSVI----GSFAI 799
               +     +   +   K   +     V  S+    I+VL   ++   VI      FAI
Sbjct: 411 ---ARYVEEGMEPYEAALKGSAQIGFTIV--SLTVSLIAVLIPLLFMADVIGRLFREFAI 465

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            ++  I+++A  S+ +   +
Sbjct: 466 TLSVTILISAVVSLTLVPML 485



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 92/255 (36%), Gaps = 8/255 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V         V  S + ++       Q     +   V + +     VA    +E+VK+  
Sbjct: 769  VHVPSSAGGQVPLSAIATITERTAPLQIAHLSQFPAVTVSFNLAPGVALGEAVEIVKEVE 828

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI- 701
              I   ++I           +  +   ++ ++ + + + + + + ++ Y     I + + 
Sbjct: 829  RGIGLPASITTAFQGAALAFQGALSNQLLLILAALVTVYVVLGVLYESYIHPITILSTLP 888

Query: 702  -LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               +   L   A  G E ++  +  ++ LIG    + +++ D            ++  + 
Sbjct: 889  SASVGALLALMA-TGGELDVIGIIGIILLIGIVKKNAIMMIDFALD--AERNQGMAPEEA 945

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I ++        + T+MAA +  LP+ +    G  +     I +  G+V +   ++F   
Sbjct: 946  IYQACLLRFRPILMTTMAAILGALPLVLGQGAGSELRSPLGICIIGGLVASQILTLFTTP 1005

Query: 818  PILLFIYDWRAKNAR 832
             I L       + AR
Sbjct: 1006 VIYLMFERAARRLAR 1020


>gi|149279045|ref|ZP_01885179.1| cation efflux protein [Pedobacter sp. BAL39]
 gi|149230324|gb|EDM35709.1| cation efflux protein [Pedobacter sp. BAL39]
          Length = 1063

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 69/696 (9%), Positives = 189/696 (27%), Gaps = 53/696 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++++++  +GLL            +  P                    +    
Sbjct: 9   KRPTLVIVVFTVLTLMGLLS-----YFGLSYELLPKFSNNVV---------SISTIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S ++          +  + +T++  D    +   +     +  
Sbjct: 55  SPNEVENTVTKKIEDAVSSMENIKKLNAVSYESLSVVTITLNDKADVDLSLNDAQRKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D     L   +  ++ ++                   I ++    +       
Sbjct: 115 ILSDLPDDVDPPSLSKFSLDDLPVITM---SASAKMDDAAFYDLIDKRIAPILSRVSGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D  +L+    +  ++    +                     N  
Sbjct: 172 QVTLVGGQEREIVVGLDADKLQGYGLSVPQIQQAILTS-------------------NLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V+     +    +       +    +        +       ++      V    
Sbjct: 213 FPTGSVKTQNQDVLVRLSGKYKSVDELRNLVVATSKSGAQIRVGDVADVQDSQKEVEKIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS-LPIKLNIVEERNVGADLGSDS 360
            +            ++  +          +   L+          ++   +    L S  
Sbjct: 273 RIDRKGAIAIQIIKQSDANAVEVSRGMHKIIENLQKDYVANGLKILIVNDSSIFTLESAD 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV  V+   +   +   +   SI  ++I T   + L G TL L S+ G+
Sbjct: 333 AVIHDLILAIVLVAFVMLFFLHSLRNAAIVMVSIPASLIATFIGIGLFGYTLNLMSLLGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I       ++   +     S    T+    +  ++    +   
Sbjct: 393 SLVVGILVDDAIVVLENIYRHMEMGKNKVRAAYDATSEIGFTVVSITLVIVVVFFPIAVS 452

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFII--RYKKMKSIDINPLSRFFLIP 535
            G     +R F + + ++ L+S+  + +IV  +          + K+I    +  F    
Sbjct: 453 TGLVSNILRQFCVVVIIATLLSLVASFTIVPLLSSRFGKLERIEGKNIFGRFILWFEKQL 512

Query: 536 DCIAIQFMRARFWGVGISILFS----------ICSICLLFTHGLNYGIDFKGGIQLGVLA 585
               +       W +    +                   F     +    KG   + +  
Sbjct: 513 HKFTLWITGILTWTLKHKAITIIGVFLLLFSSCGLTIGGFIGTEFFPKSDKGEFLVQIEL 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +   L       +  +    + +        + +     G + A     E+  + +   
Sbjct: 573 PKDASLEKTNQYTQKAEEFLNTKKEITQMITTVGQASGDFGGTQATAYKSEINVRLVDRK 632

Query: 646 V-PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                +      V  ++++ L+   +  V IS + +
Sbjct: 633 DREDESSIYATKVSRELAKVLVGAKVKTVPISILGI 668



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 84/262 (32%), Gaps = 11/262 (4%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             L V  ++      V    +         +    ++   + +Q           V   +
Sbjct: 240 RNLVVATSKSGAQIRVGDVADVQDSQKEVEKIARIDRKGAIAIQIIKQSDANAVEVSRGM 299

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI----ISAIAM-LIYIWIRFKWYFA 693
            K I  +         +I+    S     +    VI    ++ + +  + ++       A
Sbjct: 300 HKIIENLQKDYVANGLKILIVNDSSIFTLESADAVIHDLILAIVLVAFVMLFFLHSLRNA 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
              + ++   +  T     LFG   NL ++  +  ++G  V+D +VV + +    +    
Sbjct: 360 AIVMVSIPASLIATFIGIGLFGYTLNLMSLLGLSLVVGILVDDAIVVLENI---YRHMEM 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAAS 810
             +       + +E     V  ++   +   P+AV  G   +++  F + +    +++  
Sbjct: 417 GKNKVRAAYDATSEIGFTVVSITLVIVVVFFPIAVSTGLVSNILRQFCVVVIIATLLSLV 476

Query: 811 SSIFIAAPILLFIYDWRAKNAR 832
           +S  I   +            +
Sbjct: 477 ASFTIVPLLSSRFGKLERIEGK 498



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 64/163 (39%), Gaps = 7/163 (4%)

Query: 671  VGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++ S I + LI + +   + + L  + ++ L +   L   AL      +  +  ++ L
Sbjct: 872  IALLSSIILVYLIMVALYDSFIYPLVVMFSIPLSVIGALLALALTNNSLGIFTILGLIML 931

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            IG    + +++ D      ++     S  + +  + +  L   + T++A  I +LP+A+ 
Sbjct: 932  IGLVAKNAIILVDF---TNQMKAEGKSTHEALILANHARLRPILMTTIAMVIGMLPIALA 988

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G       A  +  G+  +   ++ +   +         +
Sbjct: 989  SGAGAEWKNGLAWVIIGGLTSSLFLTLIVVPVMYQVFDGMLER 1031


>gi|118587678|ref|ZP_01545088.1| AcrB/AcrD/AcrF multidrug efflux protein [Stappia aggregata IAM
           12614]
 gi|118439300|gb|EAV45931.1| AcrB/AcrD/AcrF multidrug efflux protein [Stappia aggregata IAM
           12614]
          Length = 1043

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 61/521 (11%), Positives = 150/521 (28%), Gaps = 43/521 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I   G+            +   P                         
Sbjct: 17  RRPVLAFVINMLIVVAGIAAIF-----GIEVRELPDVDRPVIT---------VSTNYPAA 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        S    ++++T+ FAD    +  A  +   L  
Sbjct: 63  AAETIDREVTGVIEGAVARVSGVKAISSSSSFGRSRVTVEFADDVDLDVAASDMRDALGR 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D + + ++        ++      D       + ++ +  +  D +       
Sbjct: 123 ITNDLPEDAEPSRIIKADANAQPVLRLGVTSD--RMSVEDMTVLVEDEISDALAAVPGVA 180

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D +++  L  T A ++                 +          
Sbjct: 181 DVQVYGDRDKIFRIDIDQAKMASLNLTIADVAKALSSMAFDTPAGSLTSQNQDLIVRATA 240

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   E   + +N                                  +     +     
Sbjct: 241 SIDTPEEFESVIINRRA------------------------RLRDFVTVTLGPDLGQTQL 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          AQ +     E        ++          V   +     G+   
Sbjct: 277 RANGKSGIGLGIIRSAQSNTLEISEGVRAAVDSIQENLPDGMTIEVTSDDATFINGAIHE 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   +VL+++F+ +   +  ++   S+ + +I TLA + L G ++ + ++  +V
Sbjct: 337 VEIALAISVSIVLLIIFIFLWDWRATIIPGVSLPVALIGTLAAIYLAGFSINILTLLALV 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  +  T +   V L F  
Sbjct: 397 LATGLVVDDAIVVLENIVRRRNEGIGPRAAAVLGAEEVFFAVLATTATLIAVFVPLSFLP 456

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           G      R F   + +++ +S   A+S+   +   I++ K 
Sbjct: 457 GQTGGLFREFGFVLAIAVFLSSIVALSLCPMLASRILKSKP 497



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 84/254 (33%), Gaps = 11/254 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+ NR   L    +      +G    +        L  ++    +++  +  +      
Sbjct: 250 SVIINRRARLRDFVTVTLGPDLGQTQLRANGKSGIGLGIIRSAQSNTLEISEGVRAAVDS 309

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
           I E +P                  I +  + + IS   +L+ I+I    W   +    +L
Sbjct: 310 IQENLPDGMTIEVTSDDATFINGAIHEVEIALAISVSIVLLIIFIFLWDWRATIIPGVSL 369

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  TL    L G   N+  + A++   G  V+D +VV + +   ++     I  R  
Sbjct: 370 PVALIGTLAAIYLAGFSINILTLLALVLATGLVVDDAIVVLENI---VRRRNEGIGPRAA 426

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
                 E     + T+       +P++   G        F   +A  +     SSI +A 
Sbjct: 427 AVLGAEEVFFAVLATTATLIAVFVPLSFLPGQTGGLFREFGFVLAIAVF---LSSI-VAL 482

Query: 818 PILLFIYDWRAKNA 831
            +   +     K+ 
Sbjct: 483 SLCPMLASRILKSK 496



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 65/157 (41%), Gaps = 7/157 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + + +L+ +  +F+ +  AL  + T+ L +   +    L G   N+ +   ++ L+G 
Sbjct: 863  GFAIVIILLVLAAQFESFISALIIMATVPLGLACAVFAMLLTGTTLNVYSQIGLVLLVGI 922

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ +      +L       R+ I+ + N  L   + T +   +  +P+ +    
Sbjct: 923  MAKNGILIVEFAN---QLRDRGQGLREAIENASNIRLRPVMMTMICTIVGGVPLIMASGA 979

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G     +    +  G+ +A  S++F+     L +  +
Sbjct: 980  GAEARIALGFVIVGGLGLATISTLFLTPVAYLLLGRF 1016


>gi|172034921|ref|YP_001801422.1| cation efflux system membrane protein [Cyanothece sp. ATCC 51142]
 gi|171696375|gb|ACB49356.1| cation efflux system membrane protein [Cyanothece sp. ATCC 51142]
          Length = 1053

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 67/587 (11%), Positives = 169/587 (28%), Gaps = 45/587 (7%)

Query: 5   PWLVIL-YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            WL+++   +I   G++      + Q  LD FP   P          +      +     
Sbjct: 17  RWLIVIGAILITLWGIV-----NITQMPLDVFPEFAPP---------QVDVQTEVPGLAP 62

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + +   + +  +   + L        S +   + + + F  +         VT  LQ ++
Sbjct: 63  EEIEAQITVPIESAVNGLPGVTTVRSSSKVGLSMVQVVFDQNADIYKARQAVTERLQQIS 122

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +   +     +        +I+     ++   +  +E    +     +QI       Q 
Sbjct: 123 GQFPENAHAPEISPLVSPLGTILQYAFTVN-GQTSLMELRRLVEGTVSNQILSVPGVSQV 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   Q     DP +LR L  +   ++                        G+    
Sbjct: 182 TVYGGDERQEQVLVDPEKLRSLNVSLTDVTEAAK--------------------GSNSNA 221

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                I G            +T + +                    +    A+       
Sbjct: 222 PGGFLIGGGQELLIRGIGKVQTIEDLQTSVVKVKDGEPILLKDVATVQTGSALKRGDGSF 281

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   + + +  +      +    + A L              R       +     
Sbjct: 282 NGQPAVVMMINKQPDVDTPTVTKAVETVIASLETTFPADVNIARTFRQANFIDAAIRNVS 341

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G+      +V +++ + ++  +  ++   +I L++I+ L  +   G  +   ++ G+V+ 
Sbjct: 342 GSLIQGIIIVSVIMLLFLMNWRTAMITLSAIPLSLIIGLLFMKAFGLGINTMTLGGLVVA 401

Query: 424 IGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           IG  VD +I+  E      R NQ        F  +          +  S +  ++    +
Sbjct: 402 IGSVVDDSIVDMENCYRGLRNNQAQDNPKHPFQVVYDTSVEVRLAVIFSTVIIIVVFAPI 461

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G       +   LSI  S   A+++  A+   ++  + +              
Sbjct: 462 FSLTGVEGRIFAPMGLAYLLSIAASTLVAMTVSPALCAILLANQTLPPDGTFISRFVIKH 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              +    ++     +  ++   I +  ++ + G  +  +F+    +
Sbjct: 522 YRPLLNLSLKLPKIILCCALAALIATFAIVPSLGRVFLPEFQEKSMV 568



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 83/261 (31%), Gaps = 9/261 (3%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
             I+      + V    P+ L  V +      +              ++  +    D+  
Sbjct: 242 QTIEDLQTSVVKVKDGEPILLKDVATVQTGSALKRGDGSFNGQPAVVMMINKQPDVDTPT 301

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFK 689
            T+ +E V   +    P                  IR     +I   I + +I +     
Sbjct: 302 VTKAVETVIASLETTFPADVNIARTFRQANFIDAAIRNVSGSLIQGIIIVSVIMLLFLMN 361

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MR 745
           W  A+  ++ + L +   L F   FG+  N   +  ++  IG  V+D +V  +     +R
Sbjct: 362 WRTAMITLSAIPLSLIIGLLFMKAFGLGINTMTLGGLVVAIGSVVDDSIVDMENCYRGLR 421

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMA 802
            N         F+ + D S+   L     T +   +   P+    G     FA   +   
Sbjct: 422 NNQAQDNPKHPFQVVYDTSVEVRLAVIFST-VIIIVVFAPIFSLTGVEGRIFAPMGLAYL 480

Query: 803 FGIVVAASSSIFIAAPILLFI 823
             I  +   ++ ++  +   +
Sbjct: 481 LSIAASTLVAMTVSPALCAIL 501



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 87/253 (34%), Gaps = 15/253 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + LS V      +    ++ ++          +  +   SV       + +
Sbjct: 781  PISTPTGQMIPLSAVAKVTYGMGANVVNREDVSRLIVVSANVAERDLGSVVADIQETIRQ 840

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY-FALGAIT 698
            +                     +  L+   I+  II  I M       F    F      
Sbjct: 841  QVQLPKGYFVQYGGQFEAEQNATNNLLVYSILAAIIITILMF------FSVKSFPATIAI 894

Query: 699  TLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             + L +    G  ++   G   ++ ++   +TL G +V + +++ D        +   + 
Sbjct: 895  MINLPLALVGGIVSIIFSGGVMSIASLIGFITLFGVAVRNGLLLVDNYN---NKFAQGMK 951

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
             +D+I K   + +   + T++ + + +LP+AV    G  ++   AI +  G+  + + ++
Sbjct: 952  LKDVIVKGSLDRVNAILMTALTSALGMLPLAVASGAGNEILQPLAIVVLGGLFTSTALTL 1011

Query: 814  FIAAPILLFIYDW 826
             +   +      W
Sbjct: 1012 LVIPALYAQFGKW 1024


>gi|323136571|ref|ZP_08071652.1| acriflavin resistance protein [Methylocystis sp. ATCC 49242]
 gi|322397888|gb|EFY00409.1| acriflavin resistance protein [Methylocystis sp. ATCC 49242]
          Length = 1032

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 64/528 (12%), Positives = 156/528 (29%), Gaps = 40/528 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G +      +       FP  +  + +  G D            
Sbjct: 9   RRPVGTTLLALSLFLLGAIAYFFLPVASLPAIDFP-IVSVSAMRPGAD------------ 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   S +        +      +I L F   R  +N A  V   +  
Sbjct: 56  -PETMAASVAAPLERRLSGIAGLNELTSTNSLGATQIMLQFDIDRNVDNAARDVQAAINA 114

Query: 122 VNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               L  D          ++  + +++     D + + AI  + + I     +I      
Sbjct: 115 AIPDLPTDLPMAPTFRKASQSGMPVLVLALTSDTLPTSAIFDATDSI--IAQRISQVSGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +      +  + D +RL  +     +++      N               +    
Sbjct: 173 AEARIAGAEQPAIRVQVDSARLAAMNLGVDEVARALYAANAHSAVGALAGTTQEITLATT 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    +                      +I                 + + +   +  
Sbjct: 233 DQLSTPED--------------------YRNIVIASRNGAVVKLGDVAKVERGVRNRMSA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      I + +   +   T++    +   L+          V          S  
Sbjct: 273 GWFNGKPAVLVIVTKQPNANVIETVDQIKAMLPQLQKWIPSGIQINVLSDRTQTIRASIH 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  I   LV++V+F+ +      + A  ++ L+++ T A +   G ++   S+  +
Sbjct: 333 DIQFTLTISVILVMMVVFVFLRRATPVIAAGITVPLSLVGTCAAMWAAGFSIDNLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G  VD  I++ E I     +  S   +   G  +   T+   +++ +   + L F 
Sbjct: 393 TISVGFVVDDAIVMIENIESFRERGLSRLEAALAGSKQIAFTVVSISLSLIAVFIPLLFM 452

Query: 481 GGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            G      R F+ T+  +ILIS   ++++   +  ++   K       
Sbjct: 453 EGVMGRLLREFSFTLTFAILISTVVSLTVTPMVCAWLPAQKHKPPTRF 500



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 93/257 (36%), Gaps = 7/257 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            I +       V L  V      ++    +          ++  +    + +     ++ 
Sbjct: 243 NIVIASRNGAVVKLGDVAKVERGVRNRMSAGWFNGKPAVLVIVTKQPNANVIETVDQIKA 302

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           +  ++ + +P     N      +  R  I      + IS I +++ +++  +    + A 
Sbjct: 303 MLPQLQKWIPSGIQINVLSDRTQTIRASIHDIQFTLTISVILVMMVVFVFLRRATPVIAA 362

Query: 698 -TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             T+ L +  T       G   +  ++ A+   +G+ V+D +V+ + + ++ +     +S
Sbjct: 363 GITVPLSLVGTCAAMWAAGFSIDNLSLMALTISVGFVVDDAIVMIENI-ESFRE--RGLS 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
             +       +     V  S++     +P+    G +   +  F+  + F I+++   S+
Sbjct: 420 RLEAALAGSKQIAFTVVSISLSLIAVFIPLLFMEGVMGRLLREFSFTLTFAILISTVVSL 479

Query: 814 FIAAPILLFIYDWRAKN 830
            +   +  ++   + K 
Sbjct: 480 TVTPMVCAWLPAQKHKP 496



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/154 (20%), Positives = 60/154 (38%), Gaps = 5/154 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            +I   +       +  I+TL       L    LF +EF + A   +L LIG    + +++
Sbjct: 869  VILGILYESLVHPVTIISTLPSAGLGALLSLELFNVEFTVIAFIGILLLIGIVKKNGIML 928

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
             D            +S  D   ++  E     + T++AA    LP+A     G  +    
Sbjct: 929  VD--FALQGEREHGLSIHDSALEAARERFRPILMTTLAAMFGALPLAFATGIGAELRRPL 986

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             I +  G++++ + +++    I L +   R K  
Sbjct: 987  GITIIGGLLLSQALTLYTTPVIYLLMSKLRRKPR 1020


>gi|153004190|ref|YP_001378515.1| protein-export membrane protein SecD [Anaeromyxobacter sp. Fw109-5]
 gi|152027763|gb|ABS25531.1| protein-export membrane protein SecD [Anaeromyxobacter sp. Fw109-5]
          Length = 611

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 126/466 (27%), Positives = 224/466 (48%), Gaps = 30/466 (6%)

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
             ++     +R+ + K G+    +++   N+I +     +  E   + +    Q      
Sbjct: 161 KAVEQAEKTIRNRVDKWGVSEPDIKRKANNQIQIQLPGFKDPEKAKELLGRTAQLEFKIT 220

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISESTIQRLG 185
           + +             +   L   +  + +   + Q+            G + +      
Sbjct: 221 DDENPAL-------DPLRGQLPACSEAEGLRLPLPQAGCWATETVELPNGGARAVTLLAA 273

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
           + R           + L +L+   A                      +R      YL+  
Sbjct: 274 NTR-----------AELEKLIQEKAAPLLDPQKNVIGIGEDSLPTGAVRTPYYRTYLLRA 322

Query: 246 KVEISGIHLNGATANFDPKTH-----KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           K E++G ++  A A  D         +P+V  +    G R   ++T +N+ + +A VLD 
Sbjct: 323 KTELTGDYIADARAAIDQSQQFGQQGRPLVQFTMTAEGGRLMQKLTSENMRRRMATVLDD 382

Query: 301 RVLTAPVINQA-----IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +V TAP I          +  +  +     E A  +A +L+AG+LP  + I EER VGA 
Sbjct: 383 KVETAPYIQGEISTNGQITLGSGRNPQEMFEEANEIALVLKAGALPAPVTISEERTVGAT 442

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG + + +GT A + GL L++LFM+  Y   GL+AD ++ LN +L LA+++++G+TLTLP
Sbjct: 443 LGPELVKRGTVAALVGLGLVLLFMVAYYRASGLIADVALVLNGLLVLAIMAMIGSTLTLP 502

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAG VL +G+AVD+N+L+NERIREE R  +++  ++  G+ + + TI DS++T L+A +
Sbjct: 503 GIAGFVLTLGMAVDANVLINERIREELRAGRTIKLAVQQGYDKVFWTIVDSHVTTLVAAL 562

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           VL  +G G VRGFA+T+ + ++ SMFT+I + R MM +  R++  +
Sbjct: 563 VLMNYGSGPVRGFAVTLTIGLVASMFTSIVVTRVMMEYFTRHETAR 608



 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 35/232 (15%), Positives = 92/232 (39%), Gaps = 4/232 (1%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L+         Q        +     +    + +      +  K   +    TI    
Sbjct: 378 TVLDDKVETAPYIQGEISTNGQITLGSGRNPQEMFEEANEIALVLKAGALPAPVTISEER 437

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  +  EL+++G V  ++    +L+++   ++    L A   L+L+    L   A+ G
Sbjct: 438 TVGATLGPELVKRGTVAALVGLGLVLLFMVAYYR-ASGLIADVALVLNGLLVLAIMAMIG 496

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A  +  +G +V+  V++ +R+R+ ++      + +  + +  ++     V +
Sbjct: 497 STLTLPGIAGFVLTLGMAVDANVLINERIREELRA---GRTIKLAVQQGYDKVFWTIVDS 553

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +   ++ L +  +G   +  FA+ +  G+V +  +SI +   ++ +     
Sbjct: 554 HVTTLVAALVLMNYGSGPVRGFAVTLTIGLVASMFTSIVVTRVMMEYFTRHE 605



 Score =  107 bits (265), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 101/249 (40%), Gaps = 26/249 (10%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFL----------PQSMLDRFPSAMPK--NRISLGLD 49
           R+  W V L        L   +P++            +++ +  P   P     ++LGLD
Sbjct: 3   RSWYWRVGLVVAATLFSLWQLVPSWFYFKLAPEQRSTEAVAEAVPGWAPDSAKHLNLGLD 62

Query: 50  LRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ--IQNKITLSFADSRF 107
           L+GG HL + VD +  V   +    DE+  FLK + +   S+       +I +  +    
Sbjct: 63  LQGGIHLAMGVDVERAVKAKVARRGDEIAEFLKSKSVPAESVTTTAGGTRIAVKTSAPDQ 122

Query: 108 KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            E+                     +     T    ++     + +      A+EQ+ + I
Sbjct: 123 VESAVLDAG------------YGDEMFSPGTEGDVVTFAFKDSALRDFQVKAVEQAEKTI 170

Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
           R R+D+ G+SE  I+R  +++I IQLPG +DP + ++LLG TA++ F      N     +
Sbjct: 171 RNRVDKWGVSEPDIKRKANNQIQIQLPGFKDPEKAKELLGRTAQLEFKITDDENPALDPL 230

Query: 228 FGVRFLRDS 236
            G       
Sbjct: 231 RGQLPACSE 239


>gi|310768053|gb|ADP13003.1| multidrug efflux system subunit MdtC [Erwinia sp. Ejp617]
          Length = 1024

 Score =  140 bits (353), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 66/602 (10%), Positives = 152/602 (25%), Gaps = 28/602 (4%)

Query: 56  LVLEVDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           +V+           +        + +   +        S      ++ L F   R     
Sbjct: 45  IVVTASLPGASPETMASSVATPLERVLGRIAGVSEMTSSSSLGSTQVVLLFDFDRDINGA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
           A  V   +    S L     +           + ++    +        +       Q  
Sbjct: 105 ARDVQGAINAAQSLLPSGMPRRPSYRKVNPSDAPIMI-LTLTSDDHSPGQLYDYASTQLA 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++   +           L  +  + +P  L     +   +       N  K        
Sbjct: 164 QRLAQIDGVGDVTVGGSSLPAVRVDLNPQALFNQGVSLDAVRTTIANANVRKPQGAIEDH 223

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                                       N +  T      +                 + 
Sbjct: 224 --------------------QQRWWLKTNDELHTAAEYRPLVIHYHHGAAVRLQDVATVT 263

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +       +  A      +     + +   TI+        LR          + + +
Sbjct: 264 DSVENARTAGMSNARPAVLVVIRKSPRANVIATIDRIRSEVPQLRKSIPAAIQLEIAQDS 323

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S    + + A+  GLV++V+F  +  G+  L+   ++ +++I T A + L G +
Sbjct: 324 SPTIRASLHEVEQSLAVSVGLVVLVVFAFLRSGRATLIPAIAVPVSLIGTFAAMYLCGFS 383

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L   S+  + +  G  VD  I+V E I            +  +G      T+   +++ +
Sbjct: 384 LNNLSLMALTVATGFVVDDAIVVLENISRHVEAGLKPLQAALLGVREVGFTVVAMSVSLV 443

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + +       G   + FAIT+ +SI IS+  ++++   M   ++R    +       
Sbjct: 444 AVFIPMLMLDGIIGRFFKEFAITLSVSIAISLAISLTLTPMMCARLLRSTAPRQQSRLRG 503

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
               L+                    L    +   L  +            Q        
Sbjct: 504 FGRVLVAIQQGYGRALHWVLDHARWALLVFIATLGLTMYLFVSIPKTFMPEQDTGRLMGF 563

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +      S        +   +    +      + +  G       +   +K   T     
Sbjct: 564 IQADQSISFQAMRGKVEHFMRIVHADPAVESVVGFTGGWEANSGAMFIALKPLSTRSDNA 623

Query: 649 ST 650
             
Sbjct: 624 QQ 625



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 48/136 (35%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L     + + +  T     L G   N  ++ A+    G+ V+D +VV + +
Sbjct: 351 AFLRSGRATLIPAIAVPVSLIGTFAAMYLCGFSLNNLSLMALTVATGFVVDDAIVVLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
               +     +         + E     V  S++     +PM +  G +      FAI +
Sbjct: 411 ---SRHVEAGLKPLQAALLGVREVGFTVVAMSVSLVAVFIPMLMLDGIIGRFFKEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           +  I ++ + S+ +  
Sbjct: 468 SVSIAISLAISLTLTP 483



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 91/216 (42%), Gaps = 6/216 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             L +   + V+ ++    + + +T +   ++++ +      +  +     +  ++ +   
Sbjct: 803  TLSFNLPEGVSLSQAAAAIDRSVTALGVPASVRGSFSGTAAVFEQTQSSQLWLILAAIAT 862

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L    LF   F+L A+  +L LIG    + +
Sbjct: 863  VYIVLGMLYESYVHPLTILSTLPSAGMGALLALKLFNAPFSLIALIGILLLIGIVKKNAI 922

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     +S R+ I ++        + T++AA +  LP+ +    G  +  
Sbjct: 923  MMVDFALQAQRQG--GMSAREAIFQASLLRFRPIIMTTLAAMLGALPLVLSSGDGAELRQ 980

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               I +  G+VV+   ++F    I L++   R K  
Sbjct: 981  PLGITLVGGLVVSQLLTLFTTPVIYLYMDKLRRKPR 1016


>gi|254448699|ref|ZP_05062157.1| cation efflux system protein CzcA [gamma proteobacterium HTCC5015]
 gi|198261707|gb|EDY85994.1| cation efflux system protein CzcA [gamma proteobacterium HTCC5015]
          Length = 1023

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 82/666 (12%), Positives = 185/666 (27%), Gaps = 40/666 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVN 67
           L  +     +L+A  +      +D +P   P               + +E +    + V 
Sbjct: 13  LLVLAILASVLVAGFSAYRSLPVDAYPDISPAL-----------VQVFVETEGLAPEEVE 61

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
            ++    +   + L K            + + + F D         +V   LQ     + 
Sbjct: 62  KYVTYPLESAMNGLPKLDRIRSVSNFGLSVVNIYFEDGTDIYFARQRVGERLQVAREAIP 121

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
               + ++   T     I+      +                    +       + L   
Sbjct: 122 SGFGEPVMGPITTGLGQILFYTLEDETGQYSREALREAQDWIVKFNLQTVRGVTEVLSVG 181

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + Q     DP  L +   +  ++       N +           +    +  L  D  
Sbjct: 182 GEVKQFQVNVDPHALLRYKISLPEIKARIEANNANAGAQFIVKNDEQYIVRSVGLASDIK 241

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           ++  I +               + I           +   + +   +  ++         
Sbjct: 242 DLKNIVVKTVNGTPVYLHQLAELTIGGKIRRGLALADGRGEAVVGMVLKLI--------- 292

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                       + +  IE        +                      + S       
Sbjct: 293 ----------GSNTSAVIEEVVKELETINDNLPDGMSVQPYYDQATLVKAAVSTVTSALV 342

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               LV IVLF+ +   +  +V   SI  +V  T   +     +  L S+ GI + IG+ 
Sbjct: 343 QGIALVTIVLFVFMGSIRPSVVVALSIPFSVAFTFLAMRYFDISANLMSLGGIAIAIGMM 402

Query: 428 VDSNILVNERIREENRKNQSVF---CSLDMGFSRAYSTIFDSNITALIATVVLFF---FG 481
           VD  ++V E I    R++ S       +          I  +    ++  + LF      
Sbjct: 403 VDGAVVVVESIERSLRESSSEESRTAIIVRACHSVARPILFAISIIILVFLPLFTLQGVE 462

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G   R  A T+  ++L S+F A+ +  A   ++++  K      +      +    +   
Sbjct: 463 GATFRPLAYTVATAMLGSLFFALVVAPACAYYLLKRPKRDDERASKSKLLAIYQPMVTAL 522

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
             R R   V IS+   +    +    G  +   F  G  L + A     +S+ ++     
Sbjct: 523 I-RRRGLAVAISLGLLVLGGAIAPRLGSEFVPRFNEGDVL-IRATMAPSISLKKAKETMQ 580

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                  ++F      + R+      + A       +   +       +  + + +   +
Sbjct: 581 VFEQELLESFPEVTKVVTRVGRGEVGAHADPINNAEIFVALKPQDEWQSASDLDGLYAAM 640

Query: 662 SRELIR 667
           S++   
Sbjct: 641 SKQFSD 646



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 23/205 (11%), Positives = 76/205 (37%), Gaps = 6/205 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + LE +   + + + +    +   +       +    + G+ +  I + +++    
Sbjct: 301 EEVVKELETINDNLPDGMSVQPYYDQATLVKAAVSTVTSALVQGIALVTIVLFVFMG--- 357

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               ++    ++   +  T      F I  NL ++  +   IG  V+  VVV + + +++
Sbjct: 358 SIRPSVVVALSIPFSVAFTFLAMRYFDISANLMSLGGIAIAIGMMVDGAVVVVESIERSL 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +  ++  S   +I ++ +      ++      +  LP+       G+     A  +A  +
Sbjct: 418 RESSSEESRTAIIVRACHSVARPILFAISIIILVFLPLFTLQGVEGATFRPLAYTVATAM 477

Query: 806 VVAASSSIFIAAPILLFIYDWRAKN 830
           + +   ++ +A     ++     ++
Sbjct: 478 LGSLFFALVVAPACAYYLLKRPKRD 502



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 79/239 (33%), Gaps = 15/239 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L +++      Q         + +Q    +    + V E  +   + +          
Sbjct: 791  NELATIEEVVGPRQITRENNQRFITIQTNVRERDIGSFVEEANRLIESRVELPPGYFLKW 850

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                ++ ++  ++ ++ V I+   +   ++  F     A   +  + L +   +    L 
Sbjct: 851  GGQFELQQQANKRLMIVVPITLALVFFMLYASFGSLKNATLIMLNIPLALVGGIAALWLS 910

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVY----DRMRKNMKLYTTSISFRDLIDKSINETLG 770
            G+  ++ A    + L G ++ + +V+     DR+                  +S    L 
Sbjct: 911  GLSLSVPASVGFIALFGIALENGLVLVNDLNDRV-------AHGTEMGKACVESACSRLR 963

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              + T++   I + P+      G  V    A  +  G++ A   ++ +   +  +    
Sbjct: 964  PVLMTAVTTAIGLSPLLFASGTGSEVQRPLATVVVGGLISATVLTLLVLPAVYPWFAKK 1022


>gi|328947788|ref|YP_004365125.1| protein-export membrane protein SecD [Treponema succinifaciens DSM
           2489]
 gi|328448112|gb|AEB13828.1| protein-export membrane protein SecD [Treponema succinifaciens DSM
           2489]
          Length = 578

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 119/502 (23%), Positives = 215/502 (42%), Gaps = 75/502 (14%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGF--------------LQMYSDELRSFLKKEGI 86
           KN + LGLDL GG +++++ D D  +                 +    + L S + + G+
Sbjct: 134 KNSVKLGLDLSGGMNVIVKADLDSVIAKQGDAVLDTATLKADIMAQAVETLTSRIDRFGL 193

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++RQ   ++I +    S   + I   +          ++ +   N            
Sbjct: 194 SSPTIRQQGEDRIYIELPGSAEADQINSIIQGRGILNFRLVDNEATSN------------ 241

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
                                     +    +           ++       D   L   
Sbjct: 242 -------------------------FNAYYYNNPDTTFDIRGNLVNPSIIPDDCEVLGYY 276

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                 +   +                         +V+  V + G H+  A    +  T
Sbjct: 277 TTDAYGLDQREGY----------------------LVVKKDVALDGKHIKSADVGAEELT 314

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +P V  S D  GA  F + T +++G+ L ++ D ++ +   IN AI  G  QI+G F  
Sbjct: 315 GRPAVTFSLDAEGAEIFGKFTGEHVGENLCIISDNKIKSNATINTAITGGNVQITG-FGQ 373

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
             A  L  +L+   L + L++  ++ +GA LG  +I +G  A+  GL+ I++FM++ Y  
Sbjct: 374 REAQNLRKVLQTAWLDVPLSVESQQVIGASLGEQAIRQGLLAVAVGLLSIMVFMLIWYKG 433

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G+ A  S  LN+ +  ++LS    T+TLP++AG++L IG+A D+N+++ ERI+EE R  
Sbjct: 434 SGINACVSQVLNLYIMFSILSAFNLTITLPTVAGMILTIGMATDANVIIFERIKEERRLG 493

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +    S+  GF  A+  I DSNIT  IA + +   G GAV+GFA+++ + ++ ++FTA+ 
Sbjct: 494 KDRVSSVSAGFDNAFWAIMDSNITTFIAAIFMTQLGSGAVQGFAVSLAIGVVSTVFTALV 553

Query: 506 IVRAMMIFIIRYKKMKSIDINP 527
           + R +  F     K+K+I I  
Sbjct: 554 VSRLIFDFQTEVLKVKNISIGW 575



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 96/218 (44%), Gaps = 4/218 (1%)

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
           I D   ++       +     Q      +         +   +    ++++ +++G  + 
Sbjct: 346 ISDNKIKSNATINTAITGGNVQITGFGQREAQNLRKVLQTAWLDVPLSVESQQVIGASLG 405

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            + IR+G++ V +  +++++++ I +K    + A  + +L++       + F +   L  
Sbjct: 406 EQAIRQGLLAVAVGLLSIMVFMLIWYK-GSGINACVSQVLNLYIMFSILSAFNLTITLPT 464

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           VA ++  IG + +  V++++R+++  +L    +S    +    +      + +++  FI+
Sbjct: 465 VAGMILTIGMATDANVIIFERIKEERRLGKDRVS---SVSAGFDNAFWAIMDSNITTFIA 521

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            + M   G   +  FA+ +A G+V    +++ ++  I 
Sbjct: 522 AIFMTQLGSGAVQGFAVSLAIGVVSTVFTALVVSRLIF 559


>gi|306841660|ref|ZP_07474349.1| multidrug efflux transporter protein, AcrB/AcrD/AcrF family protein
           [Brucella sp. BO2]
 gi|306288273|gb|EFM59653.1| multidrug efflux transporter protein, AcrB/AcrD/AcrF family protein
           [Brucella sp. BO2]
          Length = 1026

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 72/605 (11%), Positives = 159/605 (26%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+  +          +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILDLTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGDTIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           D+     G R         +   +  V  G 
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRDLIVAGSGNRIVRLSDVATVLDSVDDVNQGS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 89/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q    +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDDVNQGSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 92/259 (35%), Gaps = 10/259 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRVPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRSAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPV 1002

Query: 819  ILLFIYD----WRAKNARI 833
            I + I            ++
Sbjct: 1003 IFVEIDRLANHRWFSRKKV 1021


>gi|308450447|ref|XP_003088302.1| hypothetical protein CRE_18365 [Caenorhabditis remanei]
 gi|308248116|gb|EFO92068.1| hypothetical protein CRE_18365 [Caenorhabditis remanei]
          Length = 1013

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 63/473 (13%), Positives = 140/473 (29%), Gaps = 30/473 (6%)

Query: 56  LVLEVDEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           +   +    +   + L+       +++     +T  F   +  +  
Sbjct: 2   VTVTAALPGAAPPQLETEVARKIENSIATLQGLKNQYTNIQDGVVTVTAEFQLEKPLQEA 61

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
            D V   +  V S L  D +  ++         I+       ++   A   S  +     
Sbjct: 62  VDDVRNAVSQVRSDLPADLRDPIVSKINLSGSPILTYTIQSPRMDEEA--LSWFVDYDVA 119

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
             +   +          +  Q+  E DP +L  L  T   ++    L      G    + 
Sbjct: 120 RAMLKVKGVGAVSRVGGVTRQVEVELDPEKLLALNATATDITRQLRLVQQDASGGQTKIG 179

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
               S      V+   EI+ + +                         R        +I 
Sbjct: 180 GSEQSIRTIATVKTAAEIAAMDIAL--------------------SDGRHIRLDQVASIR 219

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +A      +L    +     +     S              L+A              
Sbjct: 220 DGIAERRSAALLNGHPVIGFEITRSKGASEVDVEIGVKEALETLKAAHP-DIKITEAFNF 278

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           V   + +           A L ++V+++ +   +  ++A  ++ L+++  L  +  LG T
Sbjct: 279 VNPVVDNYKGSMSLLYEGALLAILVVWLFLRDWRATIIAATALPLSILPALIGMYYLGFT 338

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L + ++  + L +G+ VD  I+  E I    R  ++ + +           +  +  T +
Sbjct: 339 LNIVTLLAMSLVVGILVDDAIVEIENIIRHLRMGKTPYEAAMEAADEIGLAVIATTFTLI 398

Query: 472 IATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +   F     G     F  T  L+I  S+  A  +   M  +I++    K
Sbjct: 399 AVFLPTAFMSGIAGKFFVQFGWTAALAIFASLLVARLLTPMMSAYILKPWVGK 451



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 73/242 (30%), Gaps = 6/242 (2%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + +   R + L  V S  + +     +              + +    V     ++  
Sbjct: 200 MDIALSDGRHIRLDQVASIRDGIAERRSAALLNGHPVIGFEITRSKGASEVDVEIGVKEA 259

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            + +    P   I         +         +    + +A+L+       W   + A T
Sbjct: 260 LETLKAAHPDIKITEAFNFVNPVVDNYKGSMSLLYEGALLAILVVWLFLRDWRATIIAAT 319

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L L I   L      G   N+  + A+  ++G  V+D +V  + +   ++      +  
Sbjct: 320 ALPLSILPALIGMYYLGFTLNIVTLLAMSLVVGILVDDAIVEIENI---IRHLRMGKTPY 376

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFI 815
           +   ++ +E     + T+       LP A   G        F    A  I  +   +  +
Sbjct: 377 EAAMEAADEIGLAVIATTFTLIAVFLPTAFMSGIAGKFFVQFGWTAALAIFASLLVARLL 436

Query: 816 AA 817
             
Sbjct: 437 TP 438



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 79/216 (36%), Gaps = 8/216 (3%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                       +      V   V K  T      T++ T +    +  +L     + ++
Sbjct: 779 NRLRNINFNIELNDQPLGDVAAAVDKLPTIKNLPPTVKRTNLGDADVMEQLFASFGLAML 838

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
              + + + + + FK +   +  +  L L +        L    F++ ++  ++ L+G +
Sbjct: 839 TGVLCIYVVLVLLFKDFLQPITILVALPLALGGAFVLLLLAKSSFSMPSLIGLIMLMGIA 898

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
             + +++ D     +       S  + +  + ++     + T++A    + P+A  G   
Sbjct: 899 SKNSILLVD--YAIIARNERQYSRMNALLDACHKRARPIIMTTLAMGAGMFPIA-LGIGT 955

Query: 794 IGSF----AIPMAFGIVVAASSSIFIAAPILLFIYD 825
             SF    AI +  G++ +   S+ +   +  FI D
Sbjct: 956 DPSFRAPMAISVIGGLITSTFLSLLVIPVVYTFIDD 991


>gi|254700029|ref|ZP_05161857.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella suis bv. 5 str. 513]
 gi|261750512|ref|ZP_05994221.1| RND family transporter [Brucella suis bv. 5 str. 513]
 gi|261740265|gb|EEY28191.1| RND family transporter [Brucella suis bv. 5 str. 513]
          Length = 1026

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 156/605 (25%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G  +   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFPIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFPIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/247 (13%), Positives = 90/247 (36%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRVPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPV 1002

Query: 819  ILLFIYD 825
            I + I  
Sbjct: 1003 IFVEIDR 1009


>gi|212212781|ref|YP_002303717.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuG_Q212]
 gi|212011191|gb|ACJ18572.1| acriflavin resistance plasma membrane protein [Coxiella burnetii
           CbuG_Q212]
          Length = 1022

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 62/554 (11%), Positives = 145/554 (26%), Gaps = 31/554 (5%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   V   +    +E  S ++     +    Q ++ I L+         +A+++  
Sbjct: 51  YPGASAKLVESSITTPLEEGISGVQGIDTIISQSFQRESDIKLTLDYGVNVYEVANQIRD 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++    +L  +    ++         + L          +       + R  IDQI   
Sbjct: 111 KVEQARVQLPTNINAPVVQVGWGN---MELMDVGFTAPNENPKAIRDYLERNVIDQIEQI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                   +      +    DP ++     +   +       N            +    
Sbjct: 168 PGIADVEVAGANQYAMRIWLDPQKMAARGLSVNDIQMAIQNSNVELPAGEIKGYSINYPI 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  +                       +    I  ++ G     +          +  
Sbjct: 228 TAETKLNTA-------------------DQFNNIIVKNDNGQVIRIKDIGQAQLGDDSAD 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L          +     +     +        +R         +          G
Sbjct: 269 QSIVTLDGQPGVLLSINNAIDANPLDAAKNVNHFLNQIRPHLPNGMKIVPSFDISAYMHG 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      +  I    V++V+F+ +   +   +   +I + +I +   + LLG ++ + ++
Sbjct: 329 SIHEVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYLLGFSINVITL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I++ E I       +    +   G       +    IT       +
Sbjct: 389 LALVLSIGLVVDDAIVMLENIYRHIENGEKPLIAAIKGSKEITFPVIAMTITLAAVYAPI 448

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPL 528
                      R FA T+  ++LIS F A+S+   M                + I+    
Sbjct: 449 GLMQNQAANIFRSFAFTLAGAVLISGFVALSLSPMMCSRFLKAQGGEPKGYSRIIETIYE 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +A    +         ++                  +  G +   V  +  
Sbjct: 509 RMAQGYQKILAAILNKRILVVFAAVLIAVGGFFLAKNIPMAFVPQEDMGFVIAAVSTSSG 568

Query: 589 VDLSVVRSNLESLQ 602
             ++ +   LE + 
Sbjct: 569 SSINTINRGLEQVA 582



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 77/227 (33%), Gaps = 7/227 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++ L                   L        + +   + +     +I   +P       
Sbjct: 259 QAQLGDDSADQSIVTLDGQPGVLLSINNAIDANPLDAAKNVNHFLNQIRPHLPNGMKIVP 318

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                      I +  + + I+ + +++ I++   +       I T+ + +  + G   L
Sbjct: 319 SFDISAYMHGSIHEVYISIGIAILCVILVIFLFLGRLRTVAIPIATIPVCLIASFGAMYL 378

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   N+  + A++  IG  V+D +V+ + + ++++           I  S   T     
Sbjct: 379 LGFSINVITLLALVLSIGLVVDDAIVMLENIYRHIENGEK--PLIAAIKGSKEITFPVIA 436

Query: 774 YTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAA 817
            T +       P+ +       +  SFA  +A  ++++   ++ ++ 
Sbjct: 437 MT-ITLAAVYAPIGLMQNQAANIFRSFAFTLAGAVLISGFVALSLSP 482



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/416 (11%), Positives = 102/416 (24%), Gaps = 11/416 (2%)

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G V       +      +   L    ++   A  V  +    D+N    + +    +  
Sbjct: 556 MGFVIAAVSTSSGSSINTINRGLEQVASIFKQAPAVASVVTVADTNAKAFDSVFAMLKPF 615

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI----LISMF 501
           +    S           I         A    F         F +          +    
Sbjct: 616 KDRKQSASQVADVINQKIKQIPGLNAAAFSPSFGGSMQHQLEFYLMGDTYSDLYAVSQKL 675

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
                    +  I    +  S   N      +     A                      
Sbjct: 676 INQLGNYPGLRVIQSNMRFDSQQYNMTVNRDIAGQLQANIKDIDNTMAALYGGSKISTFD 735

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR-SNLESLQIGDISFQNFDGEKNFLVR 620
               T+ +           L  +    V+ +  +   L +L                 +R
Sbjct: 736 ANGKTYNVYLQAQENDLHSLASINKFYVNNAQNKLIPLSNLISIKPILSQVVLPHYNRLR 795

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                        +  +V    TE+  L           +    L     +G+I     +
Sbjct: 796 AAQMSAQLAPGYNLGTVVNYLQTELPQLLPANVKYAFTGQAHDLLTSNNSMGLIFLLAMV 855

Query: 681 LIYIWIRFKWYF---ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            IY+ +  ++         +  + L I   +    L G   N+     ++TLIG      
Sbjct: 856 FIYLVLAAQFESFIDPFIILLAVPLSIVGAMASLKLIGGTLNIYTDIGLVTLIGLVSKHG 915

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +++        +L    ++ R+ + K+ +  L   + T+ A     LP+    G  
Sbjct: 916 ILITQFAN---RLQKEGLAMREALLKAASIRLRPILMTTAAMVFGALPLLFSSGGS 968


>gi|146343728|ref|YP_001208776.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           ORS278]
 gi|146196534|emb|CAL80561.1| Putative multidrug efflux transporter, AcrB/AcrD/AcrF family
           [Bradyrhizobium sp. ORS278]
          Length = 1048

 Score =  140 bits (352), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 61/484 (12%), Positives = 142/484 (29%), Gaps = 26/484 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  S ++        +    +  T++FA     +   + V   +  V
Sbjct: 58  PSELESQVTKIIEDGVSGVEGARHIQSLITDGLSVTTITFALETNTDRAINDVKDAVTRV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  +  + L+    +  + IV              + S  +      ++       Q
Sbjct: 118 RSDLPQNVTEPLISRVDKIGLPIVTYAAISPGKTPE--QLSFFVDDVVKRELQGVRGVSQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  ++    DP RL+ +  T   +S      N    G    +     +      
Sbjct: 176 VERIGGVEREILVSLDPDRLQAMGLTAVNVSQSLRGTNVDVAGGRAEIGKNDQAIRTLAG 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   E+S   +                       G           +   +A       
Sbjct: 236 AKTLNELSNTMIPLF--------------------GGGEVRLADLGTVTDTIADRRTFAR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +           S              ++A    + L  + + +V    G+    
Sbjct: 276 FNGEPVVALGIKRAKGASDVVVAAAVQKRIDQVKAAHPDVDL-RLIDTSVEFTKGNYEAA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    A L +I++ + +   +  ++A  S+ L++      + +LG +L + S   I L
Sbjct: 335 ISTLFEGAILAVIIVLLFLRDFRATVIAAISLPLSIFPAFWAMDILGFSLNMVSFLAITL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFF 479
             G+ VD  I+  E I    R  +S + +          A   I  + I        +  
Sbjct: 395 STGILVDDAIVEIENIVRHMRMGKSPYRAALDAADEIGLAVIAISLTIIAIFAPASFMSG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   + F IT+ + +  S+  A  +   +  + +++          + R +      +
Sbjct: 455 IAGQFFKQFGITVSVQVFFSLLAARFVTPMLAAYFLKHHDHDDPPPGFILRAYQRIVTWS 514

Query: 540 IQFM 543
           ++  
Sbjct: 515 VRHY 518



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 72/233 (30%), Gaps = 7/233 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +        +F  F+GE    + ++   G S          +    +            
Sbjct: 262 TVTDTIADRRTFARFNGEPVVALGIKRAKGASDVVVAAAVQKRIDQVKAAHPDVDLRLID 321

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
              + ++      I  +   + +A++I +     +   + A  +L L I        + G
Sbjct: 322 TSVEFTKGNYEAAISTLFEGAILAVIIVLLFLRDFRATVIAAISLPLSIFPAFWAMDILG 381

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              N+ +  A+    G  V+D +V  + +   ++      S       + +E     +  
Sbjct: 382 FSLNMVSFLAITLSTGILVDDAIVEIENI---VRHMRMGKSPYRAALDAADEIGLAVIAI 438

Query: 776 SMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           S+           + G  G     F I ++  +  +  ++ F+   +  +   
Sbjct: 439 SLTIIAIFAPASFMSGIAGQFFKQFGITVSVQVFFSLLAARFVTPMLAAYFLK 491



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 67/175 (38%), Gaps = 7/175 (4%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLT 721
             EL    I  +    + +   + + F  +   +  + +L L I   +G   L G +  + 
Sbjct: 840  NELASGFITAITAGLMIVYAVLVLLFGTFLQPITILFSLPLSIGGAIGALMLTGKQLTIP 899

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
                ++ L+G    + +++ +   + +   T      + I  +  +     V T++A   
Sbjct: 900  VYIGMMMLMGIVTKNAIMLVEFAIEAIHAGTRR---DEAIIDAGMKRARPIVMTTIAMVA 956

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++P A+    GG      A+ +  G+V +   S+     + L + D     A++
Sbjct: 957  GMMPSALAVGAGGEFRSPMALAVIGGLVFSTVLSLLFVPAMFLVMDDLGGLFAKL 1011


>gi|21244574|ref|NP_644156.1| acriflavin resistance protein [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|21110251|gb|AAM38692.1| acriflavin resistance protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 1046

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 63/544 (11%), Positives = 145/544 (26%), Gaps = 38/544 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPIIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + L F  SR  ++ A  +   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSLVVLVFQSSRNIDSAAQDIQTAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      +     A E           ++       
Sbjct: 115 SQSDLPSGLGTPMYSKANPNDDPVIAIALTSE--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +  +  
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIISND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVSKAAD-------------------FAQLAISTQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR+   P                S   
Sbjct: 274 WFDGKPAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQATLMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E +     +  S   +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDDAIVVIENVMRHLDEGMSRLDAALAGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + + +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSPHAEPETPDRFGAWLDRMHERM 513

Query: 539 AIQF 542
              +
Sbjct: 514 LRAY 517



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 338 LMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           + V+D +VV + +   M+     +S  D       E +G ++ +  A+ ++V    ++  
Sbjct: 398 FVVDDAIVVIENV---MRHLDEGMSRLDAALAGARE-IGFTIVSITASLVAVFIPMLFAS 453

Query: 792 SVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
            +I      F + +   IVV+   S+ +   +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPAL 485


>gi|86750017|ref|YP_486513.1| acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
 gi|86573045|gb|ABD07602.1| Acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
          Length = 1037

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 60/530 (11%), Positives = 131/530 (24%), Gaps = 38/530 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +  +G++           +   P+      +                  
Sbjct: 11  RPVGTTLLAIGLFLLGMVS-----YAVLPVAAIPNVDFPMVM---------VTASRPGAA 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +      +I L F+  R  +  A  V   +   
Sbjct: 57  PSVMAATVAAPLERRLGEIAGLDKITSTSSLGTTRIQLQFSIGRNIDKAARDVQAAINAS 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  D              + V     +                    +I        
Sbjct: 117 VSDLPTDLPTLPKFRKFNSAAAPVFI-LALTSKTMPVSAIYDVADTVLAQRISQVPGVGD 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +P  L      T  +    +  N       F      ++      
Sbjct: 176 VTVSGADQPAVRIALNPVALSNAGIATDDVRTAIINANPVGPVGTFDGDRQSETIATN-- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                                +T     DI                 +            
Sbjct: 234 ------------------PQMRTAAQFRDIVIKSGNGNTLRLSDVATVSDATRNSRQIAW 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      + +   +   T++    L   L+          V     G    S    
Sbjct: 276 YNKQPAVLIQITKQGDANVIETVDRVKALLPELKRWMPASVEISVVTDRTGTIRASVDDM 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    A LV++V+   +      + A  S+ L +  T A + L G ++   S+  + +
Sbjct: 336 LWTLLATAVLVMVVVLTFLRRLTPTIAAGVSVPLALAGTCAGMWLTGFSINNLSLMALAI 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G  VD  I++ E +     +      +   G  +   T+   +++ + A   L F   
Sbjct: 396 AVGFVVDDAIVMIENMYRNLERGMEPVRAATEGAKQIGFTVLSISLSLVAAFAPLIFMDG 455

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             G  +R F++T+  +I +S   ++++   +    IR +           
Sbjct: 456 LVGRLLREFSLTLTYAIAVSTVVSLTVTPMICAHFIRAETTPRQPNWYDR 505



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 10/221 (4%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            S Q     K   V +Q            ++ VK  + E+           V    +  +
Sbjct: 269 NSRQIAWYNKQPAVLIQITKQGDANVIETVDRVKALLPELKRWMPASVEISVVTDRTGTI 328

Query: 666 I----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
                      +  + + M++ +    +    + A  ++ L +  T     L G   N  
Sbjct: 329 RASVDDMLWTLLATAVLVMVVVLTFLRRLTPTIAAGVSVPLALAGTCAGMWLTGFSINNL 388

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
           ++ A+   +G+ V+D +V+ + M +N+      +       +   +     +  S++   
Sbjct: 389 SLMALAIAVGFVVDDAIVMIENMYRNL---ERGMEPVRAATEGAKQIGFTVLSISLSLVA 445

Query: 782 SVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +  P+    G V   +  F++ + + I V+   S+ +   I
Sbjct: 446 AFAPLIFMDGLVGRLLREFSLTLTYAIAVSTVVSLTVTPMI 486



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 74/241 (30%), Gaps = 11/241 (4%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            R  L  L +              L+        +    R ++ +                
Sbjct: 795  RRGLSPLAVFHSQSIPSTTVSFNLLPDVPLQDATANIQRAVDELHMPEGIRGSFDGTAGD 854

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                      L+   ++ + I          +       L  I+TL       L    + 
Sbjct: 855  FGAASSKQPLLLLAALIAMYIVLGV------LYESLAHPLTIISTLPSAGLGALLALLVT 908

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G +  + A   ++ LIG    + +++ D   +        +S  D I ++        + 
Sbjct: 909  GTQLTVIAFVGIIMLIGIVKKNGIMMVDFALE--AERVRGMSSADAIFEACIVRFRPILM 966

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++AA  + +P+ V    G  +     I +  G++V+   +++    I L I   R    
Sbjct: 967  TTLAALFAAIPLVVAVGPGTELRRPLGITIIGGLLVSQVLTLYTTPVIYLLIDRARQWRR 1026

Query: 832  R 832
            R
Sbjct: 1027 R 1027


>gi|170726182|ref|YP_001760208.1| acriflavin resistance protein [Shewanella woodyi ATCC 51908]
 gi|169811529|gb|ACA86113.1| acriflavin resistance protein [Shewanella woodyi ATCC 51908]
          Length = 1086

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 71/512 (13%), Positives = 139/512 (27%), Gaps = 42/512 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +    I   G++        +  +   P                          
Sbjct: 10  RPVTVWMFMFAIILFGMV-----GFSRLAVKLLPDLSYPTIT---------IRTQYIGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E    +K         R   + + L F      +  +  V   L  +
Sbjct: 56  PVEVEQLVSKPIEEAAGIVKGLRKISSISRSGMSDVVLEFEWGTDMDMASLDVREKLDTI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISESTI 181
             +L +D KK LL+        IV    ++       ++Q       +   Q+       
Sbjct: 116 --ELPLDVKKPLLLRFNPNLDPIVRLALSVPDASDSELKQMRTYAEEELKRQLESLSGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +  ++  + +  +L QL      +                             
Sbjct: 174 AVRLSGGLEQEVHIQLNQQKLTQLNLNADLIRNRIAEE--------------------NI 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     I G             + + +  I                NI        D  
Sbjct: 214 NLSAGKVIQGEKEYLVRTLNQFNSLEELGRIVVYRDDQTLVRLFEVANIIDAHKERNDVT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      +     +   +              L           V          + S 
Sbjct: 274 RIGDQESIELAIYKEGDANTVTVARKVTAELNKLNED--NNTELKVIYDQSEFIESAVSE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I + L ++V+++ +      L+   SI  +VI T  ++     +L + S+ GI 
Sbjct: 332 VTSAALIGSLLSMLVIYLFLRDIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGIA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +GL VD+ I+V E I        +   +   G       IF S +T L   V L F  
Sbjct: 392 LAVGLLVDNAIVVLENIDRCRSLGMNKLDAAVTGTKEVAGAIFASTLTTLAVFVPLVFVD 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
              G      A+T+  ++L S+  A++ +  +
Sbjct: 452 GVAGALFSDQALTVTFALLASLLVALTTIPML 483



 Score = 85.9 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 25/222 (11%), Positives = 79/222 (35%), Gaps = 7/222 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +             +   ++ + +    ++IQ       +      +   + +++
Sbjct: 855  QQRVAIVSANLAYGDLNEAVLEAREILGQQTLPTSIQARFGGQNEEMEHSFQSLQIALVL 914

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    +     ++     ++ L G  V
Sbjct: 915  AVFLVYLVMASQFESLLHPLLILIAVPMAVGGSILGLYITQTHLSVVVFIGLIMLAGIVV 974

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+    +L    +     I  +    L   + T++   + + PMA+    G 
Sbjct: 975  NNAIVLVDRIN---QLRQDGLDKITAISNAAKSRLRPIIMTTLTTALGLSPMALGLGDGS 1031

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             V    AI + FG+ ++   ++ +   +          +  +
Sbjct: 1032 EVRAPMAITVIFGLCLSTLLTLVVIPVLYALFDRKEFTHKEV 1073



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/220 (9%), Positives = 65/220 (29%), Gaps = 3/220 (1%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             +    ++ +      +N+               +++  + +  +   +          
Sbjct: 243 RIVVYRDDQTLVRLFEVANIIDAHKERNDVTRIGDQESIELAIYKEGDANTVTVARKVTA 302

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           +         + ++        I   +       +I S ++ML+           L    
Sbjct: 303 ELNKLNEDNNTELKVIYDQSEFIESAVSEVTSAALIGSLLSMLVIYLFLRDIIPTLIISI 362

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++   +  T        I  N+ ++  +   +G  V++ +VV + +    +  +  ++  
Sbjct: 363 SIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAIVVLENI---DRCRSLGMNKL 419

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           D       E  G    +++      +P+    G     F+
Sbjct: 420 DAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDGVAGALFS 459


>gi|114566949|ref|YP_754103.1| preprotein translocase subunit SecD [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114337884|gb|ABI68732.1| protein-export membrane protein SecD [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 403

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 137/371 (36%), Positives = 218/371 (58%), Gaps = 26/371 (7%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +   +    ++ +  I +++ I+R R+D++G+SE  I   G  R++++L G  DP   
Sbjct: 46  VVLEAQEKEGQKISADTINKAVGILRNRVDKLGVSEPLIYPQGERRVVVELAGIDDPEEA 105

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
             ++  TA++ F                               KV ++G HL  A A   
Sbjct: 106 VNIIKNTAELEFW--------------------------DESGKVLVTGKHLKEAQARAG 139

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
            +     V I FD+ GA+ F + T  N+ KPL +V+DG+V++AP ++  I  G A+I+GN
Sbjct: 140 SEGQGFEVAIDFDKEGAKLFADATTANVNKPLMIVIDGKVISAPTVSGPITDGSARITGN 199

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           FT + A  LA +LR+G+LP+   I+E+R VG  LGSDS+ K   A +AGL+ I++FM+  
Sbjct: 200 FTAKEAENLAVLLRSGALPVSFKILEKRTVGPTLGSDSLSKSVKAGIAGLIAILIFMLGY 259

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G +AD SI L  IL L  ++L GA LTLP IA  VL IG+AVD+NI++ ERI+EE 
Sbjct: 260 YRLPGFIADISIVLYSILVLGTMTLFGAVLTLPGIAAFVLSIGMAVDANIIIYERIKEEL 319

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R  +++  +++ GF+RA+ TIFD+N+T LIA  VL +FG G ++GFA+T+ + I+ SM  
Sbjct: 320 RWGKTLKAAIEAGFNRAFWTIFDANLTTLIAAFVLLYFGSGPIKGFAVTLSIGIIASMLV 379

Query: 503 AISIVRAMMIF 513
            ++  R +++ 
Sbjct: 380 VLTFTRYLLVL 390



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 77/176 (43%), Gaps = 4/176 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + + K +   I   IA+LI++   ++      A  +++L     LG   LFG
Sbjct: 228 TVGPTLGSDSLSKSVKAGIAGLIAILIFMLGYYRLP-GFIADISIVLYSILVLGTMTLFG 286

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +AA +  IG +V+  +++Y+R+++ ++      + +  I+   N         
Sbjct: 287 AVLTLPGIAAFVLSIGMAVDANIIIYERIKEELRW---GKTLKAAIEAGFNRAFWTIFDA 343

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   I+   +  +G   I  FA+ ++ GI+ +    +     +L+   D    + 
Sbjct: 344 NLTTLIAAFVLLYFGSGPIKGFAVTLSIGIIASMLVVLTFTRYLLVLSADLTKNHK 399



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 15/124 (12%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD- 64
           + V +   I      ++   + P               ++LGLDLRGG H+VLE  E + 
Sbjct: 7   FSVAVILAIIVALGALSYFTYQPIL-----------KNLNLGLDLRGGLHVVLEAQEKEG 55

Query: 65  --FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
                  +      LR+ + K G+    +      ++ +  A     E   + +    + 
Sbjct: 56  QKISADTINKAVGILRNRVDKLGVSEPLIYPQGERRVVVELAGIDDPEEAVNIIKNTAEL 115

Query: 122 VNSK 125
               
Sbjct: 116 EFWD 119


>gi|294852329|ref|ZP_06793002.1| acriflavin resistance protein [Brucella sp. NVSL 07-0026]
 gi|294820918|gb|EFG37917.1| acriflavin resistance protein [Brucella sp. NVSL 07-0026]
          Length = 1029

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 73/588 (12%), Positives = 160/588 (27%), Gaps = 42/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  MI  +GL       + Q  +  +P                         
Sbjct: 9   RRPVLATVVSLMIVLLGL-----QRIAQLSVREYPKVDETVIT---------VTTAYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     E  +  +       S R   + +T+        +    +V   +  
Sbjct: 55  SADLIQGFITAPIAEAVATTENIDYVTSSSRPSSSTVTVQMKLGADPDAALTEVIAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  +    ++V  T +  + +            + + +  + R    ++   +   
Sbjct: 115 VRGNLPDESDDLVIVKGTGQSFATMY--LAAQNPNMTSEQITEYLKRVIQPRMSTIQGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +  +    DP +L     T  ++       N           ++  S   + 
Sbjct: 173 KAEILGGQVYSMRVWLDPIQLAARQITAPEVLSAIKASNFLSAPGKTKNEYVATSITLKS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                           +    +G           +           
Sbjct: 233 TLQTPEAFGA--------------------MPIKALGDEVVRLRDVAKVELAAESTDTIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +              ++A        ++          S + 
Sbjct: 273 SFNGSAGTFLGVYPTPAANPIDMAAAVRKELPSIQASLPEGMSLVLVYDATEQISSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+ + +   +  L+   +I +++I     L +LG ++ L S+  +V
Sbjct: 333 VFTTIGEAVAIVILVIIVFLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +      +   G      +I    IT       L F G
Sbjct: 393 LAIGLVVDDAIVVLENIHRHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  +++IS   A++I   M   ++++             F       
Sbjct: 453 GLTGSLFREFAFTLAGAVIISGIAALTISPMMCSRMLKHGDQTRFQKFIDRTFSRFEKWY 512

Query: 539 AIQFM---RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
             +       R+  + I +     +  L          +   G    +
Sbjct: 513 HARVSNSLNYRWITLAIVLCLMGLTGFLFMNTSSELAPEEDSGALFSM 560



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   L  I T+ + +     F  + G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVLIPIVTIPISLIGVCFFLYVLGFSINLLSLLAMVLAIGLVVDDAIVVLENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +   D   K + E  G  V  ++       P+   G   GS+   FA  +A
Sbjct: 411 ---RHIEEGLHPIDAAFKGMKEITGSIVAMTITLAAVFTPLGFTGGLTGSLFREFAFTLA 467

Query: 803 FGIVVAASSSIFIAA 817
             ++++  +++ I+ 
Sbjct: 468 GAVIISGIAALTISP 482



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 89/272 (32%), Gaps = 11/272 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  ++   V LS V    E+     I   N        
Sbjct: 743  YDIITQVPDSYRANPEMLGNFYVRSVSGSMVPLSSVIQINENAAPAAIEQFNQLNSATIS 802

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           ++++ + K+ E            +  +    +    ++   ++ +
Sbjct: 803  ALPLPGVTTGQGLQTLVDIARSKMPE-GFFLDYSGQSRLEVEQGNTI----LIAFGLAVV 857

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +      + ++ L I   +    +     N+     ++TL+G      
Sbjct: 858  VIYLVLAAQFESFRDPFIIMMSVPLSIFGAIVPLNIGLGTLNIYTQVGLITLVGLITKHG 917

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG-- 795
            +++ +    N +     +S RD I  +    L   + T+ A  + V+P+ +  G+     
Sbjct: 918  ILMVE--FANQQRRLHGLSRRDAIVVAAETRLRPILMTTAAMALGVVPLIIATGAGAAAR 975

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             S  + +  GI +    ++F+      FI   
Sbjct: 976  YSMGLVIFTGITIGTIFTLFVVPMFYTFIAKK 1007


>gi|114705248|ref|ZP_01438156.1| AcrB/AcrD/AcrF multidrug efflux protein [Fulvimarina pelagi
           HTCC2506]
 gi|114540033|gb|EAU43153.1| AcrB/AcrD/AcrF multidrug efflux protein [Fulvimarina pelagi
           HTCC2506]
          Length = 1044

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 72/538 (13%), Positives = 154/538 (28%), Gaps = 43/538 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I   GL            +   P+                  +  E   
Sbjct: 21  RPVLTIVLNLLIVVAGLAA-----FNAVEVRELPNVDRPVVT---------VEVEFEGAS 66

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V+  L    +   S +             ++++T+ F D+      A  V   +  +
Sbjct: 67  PETVDRQLTSQLESAVSRVSGISSISSQSEFGESQVTIEFNDTVDLNVAASDVRDAVGRI 126

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  + +   +V       +I+     +     +  + +  +  +  DQ+   E    
Sbjct: 127 ADNLPENAENPEIVKADADAQAIMR--LAVTAPGMNIEDLTTLVDDRIEDQLSAVEGVAA 184

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+  +  P RL     T   ++      N                      
Sbjct: 185 LRVYGERERQIFVDVQPDRLATRGLTVGDIATSLANANLDVPAGQLESTSQSLIVRADAN 244

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    E   I+LN                                 ++            
Sbjct: 245 ISTPEEFEAIYLN------------------------GLTRLGDVASVRFGPDDAATALR 280

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +T           +A  S     +        L A         V   +     G+ S  
Sbjct: 281 VTGTTGIGLAIIRQAGYSTLEISDAVRAEVDRLNASLPDSVSMQVTSDDAIFINGAISEV 340

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +   +V  V+F+ +L  +  L+   ++ + +I  +A + + G ++ + S+  +VL
Sbjct: 341 QFTLILAVMIVTGVIFLFLLNIRATLIPAVTMPIALIGVVAFIYMAGFSINILSLLALVL 400

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
             G+ VD  I+V E I        +   +  +G    +  +  +  T     V + F   
Sbjct: 401 ATGMVVDDAIIVLENIVRRRDMGLAPRAAAVVGAREMFFAVVSTTATLAAVFVPISFLPG 460

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
             GG  R F   +  ++ IS F A+++   M  F+++    +            I   
Sbjct: 461 QAGGLFREFGYVLAAAVTISSFIALTLCPMMAAFLLKDLSRRRRPNIFTHSVQGIGGW 518



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 79/210 (37%), Gaps = 13/210 (6%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    ++ +   + + V +    +  I       E+    I+ V+I    + +++   
Sbjct: 303 SDAVRAEVDRLNASLPDSVSMQVTSDDAIFINGAISEVQFTLILAVMIVTGVIFLFLL-- 360

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    T+ + +   + F  + G   N+ ++ A++   G  V+D ++V + +   
Sbjct: 361 -NIRATLIPAVTMPIALIGVVAFIYMAGFSINILSLLALVLATGMVVDDAIIVLENI--- 416

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
           ++     ++ R        E     V T+       +P++      G +   F   +A  
Sbjct: 417 VRRRDMGLAPRAAAVVGAREMFFAVVSTTATLAAVFVPISFLPGQAGGLFREFGYVLAAA 476

Query: 805 IVVAASSSI----FIAAPILLFIYDWRAKN 830
           + +++  ++     +AA +L  +   R  N
Sbjct: 477 VTISSFIALTLCPMMAAFLLKDLSRRRRPN 506



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/227 (14%), Positives = 85/227 (37%), Gaps = 15/227 (6%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +    R      D      + +        I          +   +++        + +
Sbjct: 803  TRENRARAVSISADLPQGMAMQDAWVDVQAVISDYLEPNQRLVPLGELATIGETNSGLAL 862

Query: 674  IISA--IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            + +   + +L+ +  +F+ +  AL  I T+ L +   +     FG   NL +   ++ L+
Sbjct: 863  VFAFAIVVILLVLAAQFESFISALIIIATVPLGVACAVFALEFFGTTLNLYSQIGLVLLV 922

Query: 731  GYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            G    + ++V +   ++R+         S R+  +++    L   + T +A  +  LP+ 
Sbjct: 923  GIMAKNGILVVEFANQLREE------GKSVREAAEQAATIRLRPVMMTMIATVVGGLPLV 976

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +    G     +  + +  G+ +A  S++++     L +  + A NA
Sbjct: 977  LSSGAGAEARQALGVVIVGGLGLATISTLYLTPVAYLLLGRFSAPNA 1023


>gi|220907406|ref|YP_002482717.1| CzcA family heavy metal efflux pump [Cyanothece sp. PCC 7425]
 gi|219864017|gb|ACL44356.1| heavy metal efflux pump, CzcA family [Cyanothece sp. PCC 7425]
          Length = 1061

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 76/598 (12%), Positives = 184/598 (30%), Gaps = 58/598 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLVIL ++I    L   +   + Q  LD FP   P               + ++ +   
Sbjct: 13  RWLVILATLI----LTFWMVRTVSQMPLDVFPEFAPP-------------QVEIQTEAPG 55

Query: 65  FVNGFLQMYSD-ELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                ++      + S +           S     + + + F  +         VT  LQ
Sbjct: 56  LAPEEVESLVTLPIESAINGTPGVTTVRSSSAAGLSVVKVIFNWNTEIYRARQLVTERLQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID--------QVISHAIEQSMEIIRQRID 172
              SKL    +   L   T    ++++    I+           +  +E    +  Q  +
Sbjct: 116 QAQSKLPEGVETPQLSPITSPISTVLMYGLTIEPEAVANAASASTSLMELRRLVDWQVTN 175

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           ++       Q +     + Q     DP++L+    T A+++      N +  G       
Sbjct: 176 RLLAVPGVAQVVAYGGDVRQYQVLVDPAKLQAFNVTLAQVTEAVAAANFNAPGGFLITPD 235

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                     VE   ++    +                         +         +  
Sbjct: 236 HERLIRGVGRVESIADLQQSVITAQE--------------------GKPVRLTDVAEVQI 275

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
             A+      L        + + + Q                ++A            R  
Sbjct: 276 GAAIKRGDGSLDGKPAIVLLINKQPQADTPTVTRAIEHAMEEVKASLPKDVQVTPTFRQE 335

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S    +      + +V ++L   ++  +  L+   ++ L++++ +A+L+ +G  L
Sbjct: 336 DYIDASIENVRAALVEGSIIVALILIPFLMNWRNLLICLVALPLSLLIGVAMLNGIGQGL 395

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC------SLDMGFSRAYSTIFDS 466
              ++ G+ + IG AVD  I+  E +    R+N+           +  G      ++F +
Sbjct: 396 NTMTLGGLAVAIGSAVDDAIVDAENVYRSLRENKHAAQPRPLLDVVYDGCKEVRDSVFGA 455

Query: 467 NITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +  ++    +F      G       +    ++L S  TA+++  A+   ++ +  +   
Sbjct: 456 TVITIVVFAPIFALSGVEGSIFIPMGLGYMAAVLASSLTALTVTPALCAILLPHGHLPET 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           +         +        M+     +  S    + ++ ++ + G  +  +F+    +
Sbjct: 516 EPWVARFCKRLYLPWLNFSMQRSGIVLTASAALLVAALIIVPSFGRIFLPEFQERSLV 573



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 79/260 (30%), Gaps = 9/260 (3%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            I       +     +PV L+ V        I              L+  +    D+   
Sbjct: 248 SIADLQQSVITAQEGKPVRLTDVAEVQIGAAIKRGDGSLDGKPAIVLLINKQPQADTPTV 307

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKW 690
           TR +E   +++   +P                  I      ++  S I  LI I     W
Sbjct: 308 TRAIEHAMEEVKASLPKDVQVTPTFRQEDYIDASIENVRAALVEGSIIVALILIPFLMNW 367

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRK 746
              L  +  L L +   +      G   N   +  +   IG +V+D +V    VY  +R+
Sbjct: 368 RNLLICLVALPLSLLIGVAMLNGIGQGLNTMTLGGLAVAIGSAVDDAIVDAENVYRSLRE 427

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
           N           D++     E        ++   +   P+       GS+     +    
Sbjct: 428 NKHAAQPR-PLLDVVYDGCKEVRDSVFGATVITIVVFAPIFALSGVEGSIFIPMGLGYMA 486

Query: 804 GIVVAASSSIFIAAPILLFI 823
            ++ ++ +++ +   +   +
Sbjct: 487 AVLASSLTALTVTPALCAIL 506



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 86/219 (39%), Gaps = 14/219 (6%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-- 671
            E    + +            V+  ++ K+ + V L      +  G   + E   + I+  
Sbjct: 815  ENVSRLLVVSANVSGRDLRSVVNEIQAKVKQQVQLPPGYFIQYGGQFEAEERSTQSILLY 874

Query: 672  -GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLT 728
              +    I +++Y+ ++        A+  + L +    G    AL G   ++ ++   +T
Sbjct: 875  SAIAFVVITVIMYLSVQ---SIPSTAMIMINLPLALVGGAIAVALTGRILSIASLVGFVT 931

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L G +  + +++ D        +   + F+DL+ K   E L   + T+  + + + P+ V
Sbjct: 932  LFGVATRNGLLLVDNYN---TKFAAGMPFQDLLIKGSMERLNAILMTAFTSALGLAPLVV 988

Query: 789  WGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             GG    ++   AI +  G+V + + ++ +   +     
Sbjct: 989  AGGAGKEILQPLAIVVLGGLVTSTALTLLVLPALYARFG 1027


>gi|148658388|ref|YP_001278593.1| acriflavin resistance protein [Roseiflexus sp. RS-1]
 gi|148570498|gb|ABQ92643.1| acriflavin resistance protein [Roseiflexus sp. RS-1]
          Length = 1177

 Score =  140 bits (352), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 67/545 (12%), Positives = 165/545 (30%), Gaps = 45/545 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   ++ +L  +    G+L           ++  P                   +     
Sbjct: 21  RQPVFVTMLMLLTIVFGILA-----FRSLPVNLLPDFEVPVI---------AVTVPYPGA 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + ++       +  +    I L F +          V   +  
Sbjct: 67  GPESVADQVAKPIEDAVNTIEGIENITTNASEGVALILLEFKEGTDVNRAEQDVREKVNA 126

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D +  +        + IV       Q +   +E    +       I  +E   
Sbjct: 127 IRPTLPRDVRDPIFQKFDPNAVPIVSFAIASTQNL-SPLEVRRIVDNDIAPIIQRAEGVG 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +  Q+    D  +LR       +++      N +             +     
Sbjct: 186 SVQVSGGLQRQINVLMDLEKLRAYGILPVQITRSLQQANVNLGLGTINAGAQEINLRAPS 245

Query: 242 LVED-----KVEISG------------IHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
           L++      +++I+G              +    +       + ++     + GA     
Sbjct: 246 LLQTPDDIARIQITGTPYRIGDVATIEDGVAEKKSFTRLNGVEAIIIDVRKQSGANTVAV 305

Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
                     A+     +      + +    ++ IS    +  A + A ++         
Sbjct: 306 ADNAKAALERALGARSDLTYIVPRDASEAVRQSTISSLEELIYASVAALLVVMMFFSGVR 365

Query: 345 NIVEERNVGADLGSDSI---------YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           N++      A +    +               +   + L+V+   +      LV    + 
Sbjct: 366 NMLVTAAAPAAIALVGLVILPAIGIPVDKVLVLAIAIGLLVVLTFIRDRN-TLVTMAGLP 424

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           + ++ T AL+ L G ++ L ++  + L +GL +D  I+V E I    ++ ++   +   G
Sbjct: 425 IILMGTFALMPLFGLSINLITLLALALCVGLVIDDAIVVRENIFRHTQRGETPRVAASKG 484

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMI 512
            +    ++    +T +   V + F  G      + F IT+ ++IL+S+  A      +  
Sbjct: 485 TAEVALSVVAMTLTVVAVFVPVTFTSGTTGIIFKSFGITIAVAILLSLVEAFMFAPMLSA 544

Query: 513 FIIRY 517
            + R 
Sbjct: 545 NLFRR 549



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 12/174 (6%)

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P I   + +  ++ + I  + +L +I    +    L  +  L + +  T     LFG+  
Sbjct: 386 PAIGIPVDKVLVLAIAIGLLVVLTFI----RDRNTLVTMAGLPIILMGTFALMPLFGLSI 441

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           NL  + A+   +G  ++D +VV    R+N  +      + R    K   E     V  ++
Sbjct: 442 NLITLLALALCVGLVIDDAIVV----RENIFRHTQRGETPRVAASKGTAEVALSVVAMTL 497

Query: 778 AAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +P+    G + I   SF I +A  I+++   +   A  +   ++  + 
Sbjct: 498 TVVAVFVPVTFTSGTTGIIFKSFGITIAVAILLSLVEAFMFAPMLSANLFRRQK 551



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 56/148 (37%), Gaps = 12/148 (8%)

Query: 666  IRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                ++ +++S I + + +  +F  +   L  +  +            L  I+ ++T + 
Sbjct: 934  FESLLLAMLLSVIFVYMVLASQFGSFTQPLVIMVAMPFSFIGAFLALRLINIDLDITGMI 993

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ L+G  V + +++ D      +L    +     ++ +    L   + T+++     L
Sbjct: 994  GLIMLLGLVVKNSILLVDF---TNRLRRAGLDKHAALELAGAIRLRPILMTTLSLVAGAL 1050

Query: 785  PMAVW--------GGSVIGSFAIPMAFG 804
            P+A+         GG      A  +  G
Sbjct: 1051 PVAMGIHLVGTGEGGEFRKGLATVLIGG 1078


>gi|294339156|emb|CAZ87510.1| Multidrug resistance protein mdtB (Multidrug transporter mdtB)
           [Thiomonas sp. 3As]
          Length = 1103

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/704 (10%), Positives = 179/704 (25%), Gaps = 38/704 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G +               P                    +     
Sbjct: 71  RPIATTLLMIAVLVAGFV-----GYKLLPQAAMPEVDYPTIQ---------VTTLYPGAS 116

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    ++    +              + ITL F  S        +V   + G 
Sbjct: 117 PDVMASSVTGPLEQQFGQMPGLAQMWSVSSGGASVITLRFDLSLSLSVAEQEVQAAINGA 176

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D  +  +        + V++   +                +   ++        
Sbjct: 177 SNLLPSDLPQPPIYAKVNPADAPVIT-LGLTSATLPLTTLYDLADTRLSQKLSQVSGVGL 235

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    +   L  L  T   +                         G    
Sbjct: 236 VTLSGGHKPAIRVTVNGPALAALGLTLDSIRTAIA--------------------GANVN 275

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                           AN   ++ +   D+     G           I           +
Sbjct: 276 SPKGSISGSQQSFSIDANDQLQSPQQYRDMIIAYSGGAPVRLGDVATISTGAENAWQAAL 335

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   L+          V          + +  
Sbjct: 336 VNGKPGIVINVQRQPGANVIAVVDAIHKLLPSLQTQLPAAAQLSVLSDRTVTIRAAIADV 395

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +   +   +   ++ L ++ T   + L G ++   ++  + +
Sbjct: 396 QFELLLAVLLVVLVIFVFLRSVRATFIPATAVPLALVGTFGAMYLFGFSINTLTLMALTI 455

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I       +    +   G  +   TI     + +   + L F G 
Sbjct: 456 ATGFVVDDAIVMIENISRYIEAGERPLTAALKGAGQIGFTIITLTFSLIAVLIPLLFMGD 515

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++I+IS   +++    +   ++R+   +       S         A
Sbjct: 516 VVGRLFREFAITLAVAIVISAIVSLTFTPMLSARLLRHTPEEKQSQLFRSTGAFFDRLSA 575

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
                 R+      ++    +  L+ T  L   I             +   ++    + +
Sbjct: 576 RYTRALRWVLRHQPLVLLFAAGTLVLTVVLYVLIPKGFFPVQDTGMIQATTVAPQDVSFQ 635

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           S+     +  +   +   +  +    G     T +         + +         I   
Sbjct: 636 SMNARQQALVDALLKDPAVESVSSVVGIDGVNTTMNTGRLLIYLKPLEQRPRVQALINRL 695

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                 +      +       +  I  R+ + F+L A +   L 
Sbjct: 696 DARAAKVEGIATYLQPVQDLTINDIASRYPYQFSLSATSAAQLS 739



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 49/135 (36%), Gaps = 6/135 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                     T + L +  T G   LFG   N   + A+    G+ V+D +V+ + +   
Sbjct: 415 RSVRATFIPATAVPLALVGTFGAMYLFGFSINTLTLMALTIATGFVVDDAIVMIENI--- 471

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +             K   +     +  + +    ++P+   G   G +   FAI +A  
Sbjct: 472 SRYIEAGERPLTAALKGAGQIGFTIITLTFSLIAVLIPLLFMGDVVGRLFREFAITLAVA 531

Query: 805 IVVAASSSIFIAAPI 819
           IV++A  S+     +
Sbjct: 532 IVISAIVSLTFTPML 546



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 67/179 (37%), Gaps = 8/179 (4%)

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFG 715
                 +  +   +  ++ +   M I + + ++ Y     I + +    I   L   A  G
Sbjct: 906  SASAFQSALSNQLWLLLAAVATMYIVLGVLYESYIHPITILSTLPSAGIGALLALMA-TG 964

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             +  + A+  ++ LIG    + +++ D            +   + + ++ +  L   + T
Sbjct: 965  HDLTVIAIIGIILLIGIVQKNAILMVDFALD--AQRNQGLPPDEAMLQAAHLRLRPILMT 1022

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + AA    +P+A+    G  +     I +  G++V+   ++F    I L       + A
Sbjct: 1023 TFAALFGAVPLALGTGMGSELRQPLGIAIVGGLLVSQVLTLFTTPVIYLAFDRLATRTA 1081


>gi|218289408|ref|ZP_03493642.1| acriflavin resistance protein [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240514|gb|EED07695.1| acriflavin resistance protein [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 1041

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/674 (9%), Positives = 173/674 (25%), Gaps = 38/674 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + +L   +  +G+   L            P A      +                
Sbjct: 9   RRPVTITMLMIALVAVGVFALLHLPEELFPKLNLPVAAVVTSWN--------------GA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++    L    +         + + + F      +   +++   +  
Sbjct: 55  SPEEVEKQISHPLEQALEGLSGVNLIESQSTAGSSLVIVEFNYGVNLDEELNQMRSLVNR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D    L+       + I+       + +      S          I       
Sbjct: 115 VQPGLPSDATTPLVQQFDPNSLPIMRIAVYGSKGV-SLQTVSDAATNVVEPAIERLNGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  ++ Q+  E DP +L+    +  ++       N S          L        
Sbjct: 174 GVQEAGGLVRQITVEVDPDKLKAYHLSIEQVVNAIAANNLSADAGQVQKGSLLIPLHVSG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    ++  + +                                   I    A +    
Sbjct: 234 EIGSASQLGDLEIPLPL--------------------RGDVKLKDIAQIADGHAPIELVS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          S  +  +              ++    P     V   +      +   
Sbjct: 274 TVNDAPAVTLSISQASDANIVQVSNGVWQALPSIQQQLPPGVHVEVLTDDAQPVRDTIHT 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +     ++V+ +I+   +  +V   +I +  + T AL++  G ++   ++  + 
Sbjct: 334 VVNHTVLGFIFGILVILLILRSVRSTIVVAVAIPIATLSTFALMATAGLSINSITLGSLA 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL-IATVVLFFF 480
           +G+G  VD +I+V E I    ++  +   +  +G       +F +    + +    +F  
Sbjct: 394 VGLGSLVDFSIVVLESIFRSRQRGLAPVEAAIVGTEEVGLAVFVAACAQISVFAPSIFVP 453

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G   +  ++T+  S + ++F A++    +   ++  ++    D  P     +     
Sbjct: 454 GIAGQFFKPLSLTVSFSHVAALFVALTFTPMLASRLLTGRRFDEPDRLPGRDTPMRWYAP 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                R       +       S+    T      + F   + +       +  +V    +
Sbjct: 514 FDWSARFMHGLTELYRRLLAFSLSHRKTIFAITALMFVASVAMVPKIGFELVPNVGEDEM 573

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
                          E+                 ++   +       +P +      +  
Sbjct: 574 TVSVQTPPGTSLAATEQVTKRVEALARTHLHGIQQIDAQIGGNTYAALPATNQATITVRF 633

Query: 659 PKISRELIRKGIVG 672
                    + +  
Sbjct: 634 EDSVSSRDVEAMTA 647



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 75/222 (33%), Gaps = 7/222 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                          + Q R    + K++  I            G    R+ +   +   +
Sbjct: 815  NGVRTVEVTATPYGITQGRAQLELAKQLKSIRAPEGYSVGFGQGGAFLRQTMFDMLWAFV 874

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             S   + + +   F+        + +L            L     N+ +   V+ ++G  
Sbjct: 875  FSVALLYMLMASLFESLVTPFVIMFSLPPTFIGAALGLTLTHRSLNVDSAIGVIMVMGLV 934

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
             N+ +V+ D      +L       R+ + ++    L   + ++    +++LP+ +    G
Sbjct: 935  ANNAIVLVD---YANRLRRDGKRLREALTEAGPVRLRPILMSTATTVLAMLPLVIGYGKG 991

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               + S A  +AFG+  +   ++ +   + L I   R +  +
Sbjct: 992  AETLASMATVIAFGLTFSTMVTLLLVPAVYLAIAGKRDERTK 1033



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 65/524 (12%), Positives = 142/524 (27%), Gaps = 54/524 (10%)

Query: 20   LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYS 74
            + A+   +  + +   P    +   ++G D      + + V               +   
Sbjct: 542  IFAITALMFVASVAMVPKIGFELVPNVGED-----EMTVSVQTPPGTSLAATEQVTKRVE 596

Query: 75   DELRSFLKKEGIGVFSM---------RQIQNKITLSFAD---SRFKENIADKVTLFLQGV 122
               R+ L         +            Q  IT+ F D   SR  E +  +     Q V
Sbjct: 597  ALARTHLHGIQQIDAQIGGNTYAALPATNQATITVRFEDSVSSRDVEAMTAEFNQLAQSV 656

Query: 123  NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            +         +    +      I +     D      +   +    +R+  +   ++   
Sbjct: 657  SGATVTAAAASANGASGPASDQISVQIQGPDVAELRRLADQVAAAMRRVGGLEDIQNGAT 716

Query: 183  RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +  L       DP+ L +   T   +                              
Sbjct: 717  AAMPNVTLK-----LDPAALAEYGLTAQAVESVLKAD----------------------- 748

Query: 243  VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +  ++  +                    ++S  +       E     + K   V      
Sbjct: 749  IGGQIASTYDVNGNTYNIVVEMPPSYAQNLSHLQDLTVENQEGQMVPVTKLGTVSNGSEP 808

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +   IN              T   A +  A         +   V     GA L      
Sbjct: 809  PSITHINGVRTVEVTATPYGITQGRAQLELAKQLKSIRAPEGYSVGFGQGGAFLRQTMFD 868

Query: 363  KGTCAIVAGLVLIVLFMIVL-YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + +  +L +L   +        V  FS+    I     L+L   +L + S  G++
Sbjct: 869  MLWAFVFSVALLYMLMASLFESLVTPFVIMFSLPPTFIGAALGLTLTHRSLNVDSAIGVI 928

Query: 422  LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL---F 478
            + +GL  ++ I++ +      R  + +  +L          I  S  T ++A + L   +
Sbjct: 929  MVMGLVANNAIVLVDYANRLRRDGKRLREALTEAGPVRLRPILMSTATTVLAMLPLVIGY 988

Query: 479  FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   +   A  +   +  S    + +V A+ + I   +  ++
Sbjct: 989  GKGAETLASMATVIAFGLTFSTMVTLLLVPAVYLAIAGKRDERT 1032



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/199 (11%), Positives = 63/199 (31%), Gaps = 9/199 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           + L  +++++   V +  + +           ++   ++G I   + +L+   I      
Sbjct: 302 QALPSIQQQLPPGVHVEVLTDDAQPVRDTIHTVVNHTVLGFIFGILVILL---ILRSVRS 358

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +     + +    T    A  G+  N   + ++   +G  V+  +VV + +    +   
Sbjct: 359 TIVVAVAIPIATLSTFALMATAGLSINSITLGSLAVGLGSLVDFSIVVLESI---FRSRQ 415

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             ++  +       E        + A      P        G      ++ ++F  V A 
Sbjct: 416 RGLAPVEAAIVGTEEVGLAVFVAACAQISVFAPSIFVPGIAGQFFKPLSLTVSFSHVAAL 475

Query: 810 SSSIFIAAPILLFIYDWRA 828
             ++     +   +   R 
Sbjct: 476 FVALTFTPMLASRLLTGRR 494


>gi|167839748|ref|ZP_02466432.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           thailandensis MSMB43]
          Length = 1036

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 74/608 (12%), Positives = 182/608 (29%), Gaps = 42/608 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL   +        + ++P A+    IS+  D  G S       
Sbjct: 22  RRPVLSLVFSLLILLVGLRALM-----SLPVRQYP-ALESATISVETDYPGASQ------ 69

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+     +  +          +  Q ++ +      +   +    +V   +Q 
Sbjct: 70  --DLMQGFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQ 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     + +  ++R     +       
Sbjct: 128 VKYKLPADAYDSVITKLTDAPTAVMYLGFASDTL--SIPQITDYVVRVAQPLVTTVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D +RL     +   ++      N                     
Sbjct: 186 SAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANT 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D    +                   + +     G                       
Sbjct: 246 DLTDVGAFN------------------EMVVKNAPNGGGLVRLKDVATAEIGGENYNSSA 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +   G +   +                      S + 
Sbjct: 288 LMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAMERNKPASIQIANMFDGARFVNASIAE 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A    +V++V+F+ +   +  ++   +I L+++ + AL+   G +L L ++  +V
Sbjct: 348 VRSTLAEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMV 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     + +    +  +G     S +     T +     +   G
Sbjct: 408 LAIGLVVDDAIVVVENIHRHIEEGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMG 467

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++L+S   A+++   +   ++  K       K+I+        +
Sbjct: 468 GLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSKMSEGRVAKAIEHALERVTRV 527

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + + +   +            + +G I + V A +  +L  
Sbjct: 528 YRRGLRASLAARPAILLIGAGVLAGIMLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDY 587

Query: 594 VRSNLESL 601
           +      +
Sbjct: 588 MERYAPDI 595



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 71/204 (34%), Gaps = 9/204 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            VL  +++     + ++ + +          E+       + I  + + +++     +  
Sbjct: 316 AVLPAMERNKPASIQIANMFDGARFVNASIAEVRSTLAEAIAIVVVVIFLFLG---SFRA 372

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 373 VIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIE 429

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                         E     +           P+ + G   GS+   FA  +A  ++V+ 
Sbjct: 430 EGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSG 489

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ ++  +   +   +    R+
Sbjct: 490 IVALTLSPMLGSLLLTSKMSEGRV 513



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 60/156 (38%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L +   L    L     N+     ++TLIG 
Sbjct: 865  GFALIVIFLVLAAQFESLRDPLVILVSVPLSVCGALAPLYLGFATLNIYTQIGLVTLIGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++      N       +  R  I+++    L   + T+ A    ++P+      
Sbjct: 925  ISKHGILMVS--FANDLQRHDGLDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 982

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G +   +  I ++ G++V    ++F+   +  F+  
Sbjct: 983  GAASRFAIGITVSAGMLVGTLFTLFVLPTVYTFVAK 1018


>gi|269837754|ref|YP_003319982.1| protein-export membrane protein SecD [Sphaerobacter thermophilus
           DSM 20745]
 gi|269787017|gb|ACZ39160.1| protein-export membrane protein SecD [Sphaerobacter thermophilus
           DSM 20745]
          Length = 489

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 119/534 (22%), Positives = 218/534 (40%), Gaps = 69/534 (12%)

Query: 1   MR-NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           MR    + +IL  ++    + + LP+     +LD F     +  +  GLDL+GG  ++L+
Sbjct: 1   MRIKPGFALILIVLLTLGAVWVDLPDG----VLDPFNWKGDRISVHQGLDLQGGLQVILQ 56

Query: 60  VDEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                        L    D +   +   G+                              
Sbjct: 57  AQPPAGQSVSRDALLGTRDTIERRVNALGVS----------------------------- 87

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
                          + L+ T  + +I + L                 E     + +  +
Sbjct: 88  ---------------EPLIQTRGDDQIVVELPGIEDP-----------EAAVNILKETAL 121

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E            + +     P+         A  S        +  G         ++
Sbjct: 122 LEIINPNGQYLPEGMLVNTTLGPADSVGTGSPAATPSATPSATPEATPGADGAAGTEAEA 181

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                    +  ++G  L  A    DP+T   VV        A++F++ T  +IG+P+++
Sbjct: 182 TPEPSGPVYETIVTGADLKDAYPTTDPQTGVLVVGFELKPEAAQKFYDFTSTHIGQPMSI 241

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           V+D RV++   I    P   + +           LA  L++G+L + L +V+ R VG  L
Sbjct: 242 VVDKRVISTAEIR--NPIRDSGVIQGMPAAEVNALALQLKSGALAVPLEVVQSRTVGPTL 299

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G DSI K   A   GL L+ LFMI+ Y   G+++  ++ +   +  AL  L+   LTL  
Sbjct: 300 GQDSIDKSIVAGAVGLALVALFMILFYRVPGVLSVVALMVYSAIVFALFKLIPVVLTLAG 359

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           IAG +L IG+AVD+N+L+  R++EE R+   V  +++ GF  A+ +I DSN++ +I  V+
Sbjct: 360 IAGFILSIGMAVDANVLIFSRMKEELRRGNPVRRAIEAGFDHAWPSIRDSNVSTMITCVI 419

Query: 477 LFFFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           L++FG       ++GFA+T+ + + +SMF+AI++ R ++  ++      +    
Sbjct: 420 LYWFGRYTGASIIQGFALTLFIGVAVSMFSAITVTRTLLRVMLTRGFFHNEWWF 473



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 91/232 (39%), Gaps = 8/232 (3%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           + + I          E    +R         A       ++ K   +     +  +  VG
Sbjct: 237 QPMSIVVDKRVISTAEIRNPIRDSGVIQGMPAAEVNALALQLKSGALAVPLEVVQSRTVG 296

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P + ++ I K IV   +    + +++ + ++    + ++  L++        F L  +  
Sbjct: 297 PTLGQDSIDKSIVAGAVGLALVALFMILFYRVP-GVLSVVALMVYSAIVFALFKLIPVVL 355

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            L  +A  +  IG +V+  V+++ RM++ ++        R  I+   +        ++++
Sbjct: 356 TLAGIAGFILSIGMAVDANVLIFSRMKEELR---RGNPVRRAIEAGFDHAWPSIRDSNVS 412

Query: 779 AFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             I+ + +  +    G S+I  FA+ +  G+ V+  S+I +   +L  +   
Sbjct: 413 TMITCVILYWFGRYTGASIIQGFALTLFIGVAVSMFSAITVTRTLLRVMLTR 464


>gi|329903605|ref|ZP_08273563.1| Putative multidrug transport protein, putative membrane
           protein,Acriflavin resistance protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327548265|gb|EGF32960.1| Putative multidrug transport protein, putative membrane
           protein,Acriflavin resistance protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 1030

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 79/599 (13%), Positives = 171/599 (28%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I  +GL         +  +   P+      I++   L G         
Sbjct: 9   RRPVMAVLLSIAIVVVGLFA-----YSKLPIAALPTYNTP-VINVTASLPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +        S       I L F   R  +  A  V   L  
Sbjct: 55  SPEIMAASVATPLEKQFSTISGISTISSSNTLGNTSIVLEFNSDRDIDAAAVDVQAALLR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L V+              + VL    +        + +          +   +   
Sbjct: 115 AQRSLPVELTALPAYRKVNPADAAVLL-VALTSPSISLADLNDYAENLISPTLSTIDGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  +  P  L     T  +++      N +    +        +     
Sbjct: 174 QVAVYGQRRFAVRVKVRPDELAARNLTLDELAKLIQAANTNGPVGVLDGPRQSLTLEANR 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +++  E                      ++                 +   +     G 
Sbjct: 234 QLKNAAEFG--------------------ELIVSTRDGYTTRLKDVATVEDSVESAKSGS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +   +    ++         +A                +   S   
Sbjct: 274 WVNGEPSIVLAVQRQPNANTVAVVDAVKATLPKFKAQMPASIEIHELNDRSLSIRESIVD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +       +   ++ +++I   AL+ +LG +L   S+ GI 
Sbjct: 334 VRHTLILTIVLVILVIFLFLKRLSATAIPVVTLPISLIGCCALMYVLGYSLDNISLLGIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +GL VD  I++ E I     +  +   +   G      TI   +I+ +   + +FF  
Sbjct: 394 IAVGLVVDDAIVMLENIVRYVEQGMTPMAAALKGSREVGFTILSISISLVAVFIPIFFMP 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
           G      R FA  + L+I++S   ++++V  +    +++         S          L
Sbjct: 454 GVIGLIFREFAAVVSLAIMVSALISLTLVPMLCSRFLKHAPPEDDSWISRQFEKGFHTVL 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                 + +  AR   V +  L +      LF          +   Q+      P D+S
Sbjct: 514 DTYSRGLDWCLARTRLVLVGALSTFLLTGFLFIDIPKGFFPTEDIGQIRATIEGPQDIS 572



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 85/248 (34%), Gaps = 14/248 (5%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            + ++         + +           + L  Q   +     V++ VK  + +      
Sbjct: 253 TTRLKDVATVEDSVESAKSGSWVNGEPSIVLAVQRQPNANTVAVVDAVKATLPKFKAQMP 312

Query: 651 IQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIWIRFKWYFALG-AITTLILDITK 706
                      S  +    +     +I++ + +++ I++  K   A    + TL + +  
Sbjct: 313 ASIEIHELNDRSLSIRESIVDVRHTLILTIVLVILVIFLFLKRLSATAIPVVTLPISLIG 372

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                 + G   +  ++  +   +G  V+D +V+ + +   ++     ++      K   
Sbjct: 373 CCALMYVLGYSLDNISLLGITIAVGLVVDDAIVMLENI---VRYVEQGMTPMAAALKGSR 429

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     +  S++     +P+    G    +   FA  ++  I+V+A  S+     ++  +
Sbjct: 430 EVGFTILSISISLVAVFIPIFFMPGVIGLIFREFAAVVSLAIMVSALISL----TLVPML 485

Query: 824 YDWRAKNA 831
                K+A
Sbjct: 486 CSRFLKHA 493



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 60/152 (39%), Gaps = 8/152 (5%)

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            IYI +      +   L  +  L       L    LF  E  L A   +L LIG    + +
Sbjct: 861  IYILLGVLYESYIHPLTILAGLPSAAVGALLALRLFNFELTLIATIGILMLIGIVKKNAI 920

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ D   +  ++    ++  + I  +        + T++AA +  LP+A     G  +  
Sbjct: 921  MMIDFALEAQRV--RGLTPFEAIRSACLLRFRPIMMTTLAALVGALPIAFGLGAGAELRQ 978

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               + +  G++V+   ++FI   I L +  + 
Sbjct: 979  PLGVAIVGGLLVSQVITLFITPVIYLVLDRFS 1010


>gi|319786562|ref|YP_004146037.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465074|gb|ADV26806.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 1027

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 67/550 (12%), Positives = 161/550 (29%), Gaps = 41/550 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+++ ++C  GL         +  + RFP                   ++     
Sbjct: 10  RPLPAVMVFFVLCVAGLW-----GFHKLPVARFPDIAFPMVT---------VTVMQPGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  + +      + S+ +  +  ++ F          D     +  +
Sbjct: 56  PSQLEAEVTRRVEDSVATIPNIKRIMSSVNEGVSTTSIEFQLETDLATALDDTRDAVTRI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D ++ ++         +  +          A E S  + R+    +       +
Sbjct: 116 RTDLPQDIQEPVISKVDIGGSLMTYALVA---PRMSADEASWFVDREVTRAMYGVPGVAE 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  + DP  L+    T   +S         + G                 
Sbjct: 173 VTRVGGVDRQVRVDLDPDALQAFGVTAGDVSAQLARIQVERAGGRALQSGSEQVIRTIGT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V D   +    ++                        R         +    A   +  +
Sbjct: 233 VADARALEDYSISLP--------------------DGRAVRLSALARVRDAAADPAEAAL 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L    +     S     S              L+A    I    +    +     S +  
Sbjct: 273 LDGAPVVAFSMSRTRGSSEVEVEAGVHEALEQLKAVHPGIDF-RLVTTAIDETHRSYASS 331

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                  A L L+V+++ +   +   V+  ++ L++I T A++  LG +L + ++  + +
Sbjct: 332 MTMLWEGALLALLVVWLFLRDMRATWVSAVALPLSIIPTFAVMYWLGFSLNMITLLALAV 391

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
            +G+ VD  I+  E I    R  +S   +         + +  +++T     V + F   
Sbjct: 392 VVGILVDDAIVEIENIVRHLRMGKSPLEAAREAAGEIGNAVIATSLTLAAVFVPVAFMPG 451

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R F  T   ++L S+  A  +   M  ++++    +  +   +  +    D   
Sbjct: 452 IAGKFFREFGWTAATAVLFSLLVARLLTPMMAAYLLKPHDHQERESRLMRWYLGWVDKAL 511

Query: 540 IQFMRARFWG 549
               R  +  
Sbjct: 512 RHRARTLWIA 521



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 54/152 (35%), Gaps = 9/152 (5%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +   L L I  T       G   N+  + A+  ++G  V+D +V  + +   
Sbjct: 351 RDMRATWVSAVALPLSIIPTFAVMYWLGFSLNMITLLALAVVVGILVDDAIVEIENI--- 407

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
           ++      S  +   ++  E     + TS+      +P+A      G     F    A  
Sbjct: 408 VRHLRMGKSPLEAAREAAGEIGNAVIATSLTLAAVFVPVAFMPGIAGKFFREFGWTAATA 467

Query: 805 IVVAASSSIFIAAPILLFI---YDWRAKNARI 833
           ++ +   +  +   +  ++   +D + + +R+
Sbjct: 468 VLFSLLVARLLTPMMAAYLLKPHDHQERESRL 499



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 80/225 (35%), Gaps = 9/225 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            +                  V+E V+   +       ++       ++  EL    ++ ++
Sbjct: 791  QRQRNITLTAELSGRPLGEVMEAVQGLPSVRNLPPGVEFLNAGDAEVFVELFVGFLLAMV 850

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               + + + + + F      L  +  + L      G   L     +L A+  +L LIG +
Sbjct: 851  AGIVCIYMVLLLLFNHALMPLTILVAVPLCAGGAFGALLLTQNMLSLPALIGLLMLIGIA 910

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV--LPMAVWGG 791
              + +++ D     +      +S  D +  +  +     + T++A    +  + + + G 
Sbjct: 911  TKNSILLVD--YAVIAEDEQGMSQHDALVDACRKRARPIIMTTLAMGAGMMPIALGLSGD 968

Query: 792  SVIG-SFAIPMAFGIVVAASSSIFIAAP---ILLFIYDWRAKNAR 832
            S      AI +  G++ +   S+ +      +L  + +W A+  R
Sbjct: 969  SSFRAPMAIAVIGGLITSTLLSLIVIPAAYTVLDDLGEWFARRFR 1013


>gi|169831515|ref|YP_001717497.1| preprotein translocase subunit SecD [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638359|gb|ACA59865.1| protein-export membrane protein SecD [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 410

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 127/382 (33%), Positives = 219/382 (57%), Gaps = 26/382 (6%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +        +    A+++S+ ++ +RI+Q G++E  IQ+ G++RI++++ G  DP  +
Sbjct: 51  VVLEAVDTEDAKATPDAVQRSIGMLEERINQFGVTEPVIQQQGTNRIIVEIAGVDDPDAV 110

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            + L   A + F                             +    ++G  L+ A    +
Sbjct: 111 VRDLIRPAYLEFR--------------------------TEDGTTVLTGADLSDAREAIN 144

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
           P T +P V+++++  GA+ F EVT  ++G+ L + LDG +L  P I Q IP GKA I+G 
Sbjct: 145 PNTREPEVNLTWNPEGAKTFAEVTAAHVGRRLGIYLDGHMLQNPEIKQPIPDGKAVITGY 204

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            +++ A  +A +LR+G+LP+KL+I+E+R VG  LG+DS+ +   A   G   I+LFM++ 
Sbjct: 205 ESLQEANRVAVLLRSGALPVKLDIMEKRTVGPQLGADSLERSVTAGAIGFGAILLFMVLY 264

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   GLV+  S+ +   L L +L+   ATLTL  I G +L +G+A+D+NI++ ER++EE 
Sbjct: 265 YRLPGLVSAVSLVVYATLVLLVLAAFNATLTLAGIFGFLLSLGIAIDANIIIFERLKEEL 324

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R  +S+  ++D GF RA+  I D+N+T LIA V+L+ F    ++GFA+T+G+ ILISMFT
Sbjct: 325 RTGRSLRSAVDAGFKRAFVAILDANVTTLIAAVILYVFAPVMIKGFALTLGIGILISMFT 384

Query: 503 AISIVRAMMIFIIRYKKMKSID 524
            + + + M+  +     + S  
Sbjct: 385 GLVLTKWMLHLLAGSGMVNSPR 406



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 32/203 (15%), Positives = 85/203 (41%), Gaps = 4/203 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    Q      V  +   +     I     VGP++  + + + +    I   A+L+
Sbjct: 200 VITGYESLQEANRVAVLLRSGALPVKLDIMEKRTVGPQLGADSLERSVTAGAIGFGAILL 259

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + ++    L +  +L++  T  L   A F     L  +   L  +G +++  +++++
Sbjct: 260 FMVLYYRLP-GLVSAVSLVVYATLVLLVLAAFNATLTLAGIFGFLLSLGIAIDANIIIFE 318

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+++ ++   T  S R  +D          +  ++   I+ + + V+   +I  FA+ + 
Sbjct: 319 RLKEELR---TGRSLRSAVDAGFKRAFVAILDANVTTLIAAVILYVFAPVMIKGFALTLG 375

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
            GI+++  + + +   +L  +  
Sbjct: 376 IGILISMFTGLVLTKWMLHLLAG 398



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 22  ALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-VDEDD--FVNGFLQMYSDELR 78
           +L +F P + +   P       I+LGLDLRGG H+VLE VD +D       +Q     L 
Sbjct: 20  SLVSFYPVAGVPWLP---LTQDINLGLDLRGGVHVVLEAVDTEDAKATPDAVQRSIGMLE 76

Query: 79  SFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKV 115
             + + G+    ++Q   N+I +  A     + +   +
Sbjct: 77  ERINQFGVTEPVIQQQGTNRIIVEIAGVDDPDAVVRDL 114


>gi|17988818|ref|NP_541451.1| acriflavin resistance protein F [Brucella melitensis bv. 1 str.
           16M]
 gi|256043691|ref|ZP_05446615.1| acriflavin resistance protein F [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260564880|ref|ZP_05835365.1| RND family transporter [Brucella melitensis bv. 1 str. 16M]
 gi|265990111|ref|ZP_06102668.1| RND family transporter [Brucella melitensis bv. 1 str. Rev.1]
 gi|17984638|gb|AAL53715.1| acriflavin resistance protein f [Brucella melitensis bv. 1 str.
           16M]
 gi|260152523|gb|EEW87616.1| RND family transporter [Brucella melitensis bv. 1 str. 16M]
 gi|263000780|gb|EEZ13470.1| RND family transporter [Brucella melitensis bv. 1 str. Rev.1]
          Length = 1025

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/604 (11%), Positives = 155/604 (25%), Gaps = 38/604 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G     + I  S     +   +L   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTTIISMSLSLVAVFLPILLMGG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDCI 538
             G  +  F + + L+IL S   ++++   +   +   +     I              +
Sbjct: 454 IVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRAV 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +   + F       +      +  +  G + +   A + +    +    
Sbjct: 514 GWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSELQ 573

Query: 599 ESLQ 602
           +   
Sbjct: 574 KQAA 577



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 91/246 (36%), Gaps = 13/246 (5%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++         ++ + 
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVG-SQEVT 432

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 433 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 492

Query: 828 AKNARI 833
           AK  RI
Sbjct: 493 AKPGRI 498



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 91/247 (36%), Gaps = 6/247 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            + A     + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 764  LRAPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 823

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 824  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 883

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 884  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 941

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 942  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPV 1001

Query: 819  ILLFIYD 825
            I + I  
Sbjct: 1002 IFVEIDR 1008


>gi|257469238|ref|ZP_05633332.1| acriflavin resistance protein B [Fusobacterium ulcerans ATCC 49185]
 gi|317063485|ref|ZP_07927970.1| acriflavin resistance protein B [Fusobacterium ulcerans ATCC 49185]
 gi|313689161|gb|EFS25996.1| acriflavin resistance protein B [Fusobacterium ulcerans ATCC 49185]
          Length = 1026

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/618 (12%), Positives = 171/618 (27%), Gaps = 44/618 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +  IGL+               P                      +  
Sbjct: 9   RRPVATTMVMISVMFIGLMAMFSMKSELLPNMNIPVVT--------------VRTTWQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E+   ++       +    Q+ I + F      +    ++   L  
Sbjct: 55  VAEDVETQVTKKIEEILPNVEGIDKIESTSTYGQSTIVVKFDYGVNADEKVTEIQRELSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L       +         ++ L             E S  +      +        
Sbjct: 115 ITNDLPSAADTPIAKKVEAGTGNLTLVIMMSAPNK---TELSSFVEEYLKPKFESLPGIG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         QL  + D  +L     +  ++     + + +                   
Sbjct: 172 QVNVFGNPDKQLQIQIDSDKLAAYDLSPMELYDMIRVSSLNVPLGTISTGSKDVIVR--- 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                   +         +            N+        D  
Sbjct: 229 ------------------FMGELNYIDTFKDMILKSNGNTLRLKDVANVVLTTEDPDDIS 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L+       I    +  S     + A      L +   P  +  V          S S 
Sbjct: 271 YLSGKESIAVIVEKSSDGSTIDLNKRALEALESLESIMPPETVYNVLLDTSIDINQSISN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             GT      L  IVL++ +   +  L+   ++ + VI T A L+L G +L L S+ G+ 
Sbjct: 331 VSGTAVQGLILATIVLYLFLKNIRATLLVSAALPVAVIFTFAFLALNGTSLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR--AYSTIFDSNITALIATVVLFF 479
           +G+G+  D++++V + I     + +S         +   A S I  +  T ++   +LF 
Sbjct: 391 IGVGMLTDNSVVVVDNIYRHMTELKSPVMEASDNATTEVAMSVIASALTTMVVFIPILFI 450

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLIP 535
            G      R  A ++  S L ++  +++++  +    +  K    K   I    +   + 
Sbjct: 451 PGIAREIFRDLAYSIIFSNLAAIIVSLTLIPMLASRFLTNKADITKEGKIFGTVKSNYLK 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                   R +  G+ + +          F          +G   +     + +DL   +
Sbjct: 511 LINWAVDHRGKTVGITVLVFVISMVTVPRFLKMEFMPKQDQGRYSIVAELGKGLDLEKSK 570

Query: 596 SNLESLQIGDISFQNFDG 613
           +  + ++   I+  N   
Sbjct: 571 AIAKEIEDIVINEPNTQS 588



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/214 (14%), Positives = 78/214 (36%), Gaps = 8/214 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                          V    + + + +      P  ++        +   +   +    +
Sbjct: 786 TDRIYSVTVSANDGGVGMKAIQDKLVEAYENTNPPKSVDYRWGGNSENLSDATSQLGFAL 845

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            IS   +   +  +F+ +   +  I ++ L +   +    L G   ++  +  V+ L G 
Sbjct: 846 GISIFLIYALLAAQFENFVLPVIIIGSIPLALVGIVWGLLLTGQPVDIMVMIGVILLAGV 905

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            VN+ +V+ D ++            ++ + +S    L   + T+M   + +LP+++    
Sbjct: 906 VVNNAIVLIDFIK---MTRERGSERQEAVIESCRTRLRPILMTTMTTVLGMLPLSLGLGE 962

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           G  +    AI + FG+  +   ++ +  PIL  +
Sbjct: 963 GSEIYRGMAITVMFGLTFSTLLTLVVI-PILYTL 995



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 79/243 (32%), Gaps = 9/243 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V    L +    DIS+ +       +V             R LE ++   + + P +  
Sbjct: 255 DVANVVLTTEDPDDISYLSGKESIAVIVEKSSDGSTIDLNKRALEALESLESIMPPETVY 314

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    I++ +       V    +A ++           L     L + +  T  F 
Sbjct: 315 NVLLDTSIDINQSISNVSGTAVQGLILATIVLYLFLKNIRATLLVSAALPVAVIFTFAFL 374

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           AL G   NL ++  +   +G   ++ VVV D +     +        +  D +  E    
Sbjct: 375 ALNGTSLNLISLMGLSIGVGMLTDNSVVVVDNI--YRHMTELKSPVMEASDNATTEVAMS 432

Query: 772 SVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++   +  +P+    G    +    A      I+ +  ++I ++  ++  +     
Sbjct: 433 VIASALTTMVVFIPILFIPGIAREIFRDLAYS----IIFSNLAAIIVSLTLIPMLASRFL 488

Query: 829 KNA 831
            N 
Sbjct: 489 TNK 491


>gi|254282657|ref|ZP_04957625.1| acriflavin resistance protein [gamma proteobacterium NOR51-B]
 gi|219678860|gb|EED35209.1| acriflavin resistance protein [gamma proteobacterium NOR51-B]
          Length = 1065

 Score =  140 bits (352), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/501 (12%), Positives = 137/501 (27%), Gaps = 37/501 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                 +  P       I + L   G       +   D     L+    ELR+ +     
Sbjct: 30  YTSIPKEAEPDVTIPT-IYVSLVHEG-------ISPKDAERLLLRPMEQELRA-IPGLEE 80

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                 Q    +TL F      +     V   +    S+L  + ++  +         ++
Sbjct: 81  IRSVGSQGHASLTLEFDAGFDPDEALRDVREKVDVAKSELPSETEEPRVQEINPALFPVL 140

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               +        + ++    R   D +    S ++   +      +    DP RL+   
Sbjct: 141 TVALSGSLPERELLARA----RTLRDALEGISSVLEVDIAGDRESVVDIIVDPHRLQAYD 196

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +  ++       N               S     ++E                     +
Sbjct: 197 LSFDEVLTRVRRNNRLVAAGAVESEAGNISVQVPGVIES--------------------Y 236

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             V  +     G +        +I +          +            +   +   T+E
Sbjct: 237 SDVQRLPLKVDGEQVVTFGDVGSIYRTFKDPNGFARVNGEPAIALEVKKRVGANIIETVE 296

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  +                 +             +        LV++V  + +     
Sbjct: 297 EARQIIGQHLTDWEGDLQADYLQDKSKQTRDMLGDLQNNVISAIFLVMVVAIIALGPR-P 355

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   +I  + +  +  +S LG TL +  +  ++L +G+ VD  I+  E       +  
Sbjct: 356 ALLVGVAIPGSFLAGILAISALGYTLNIVVLFSLILVVGMLVDGAIITVELADRRLSRGM 415

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
               +      R    I  S  T L   V L F+    G  ++    T+ +++  S+F A
Sbjct: 416 DGKTAYAGAAKRMAWPIIASTATTLAVFVPLLFWPGIVGEFMKYLPATVIVTLGASLFMA 475

Query: 504 ISIVRAMMIFIIRYKKMKSID 524
           +  V  +   +      KS  
Sbjct: 476 LVFVPVLGGLLTSRLSGKSTS 496



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 77/226 (34%), Gaps = 20/226 (8%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                ++ ++      +       ++  ++        +        K  +E I   +   
Sbjct: 805  NGQRIMAVKANVDTGLLPDTQTRLLSAQLDTTEIPEGVLVRFKGEDKDLQESIGFLLGAF 864

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIG 731
             ++ + ML  +  +F  +Y A   ++ ++      L    + G  F +      V+ L G
Sbjct: 865  AVAIVLMLAALVAQFNSFYQAFVVLSAIVFSTAGVLLGLLVTGNPFGVVMGGIGVIALAG 924

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VN+ +V+ D      +     I  +  I ++  +     + T++   + V+PM +   
Sbjct: 925  IVVNNNIVLIDTYN---RHRAQGIDPQTAILQTALQRRRPVLLTALTTILGVMPMVIGLN 981

Query: 789  ---------WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                     +G          A  +A G+  A   ++ +   +L+ 
Sbjct: 982  ADLAGRELSFGAPSTQWWKGLASAIAGGLTFATVLTLVLTPCLLML 1027



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 87/282 (30%), Gaps = 4/282 (1%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R     V    + S      +   G+         + L V   + V    V S   + + 
Sbjct: 207 RRNNRLVAAGAVESEAGNISVQVPGVIESYSDVQRLPLKVDGEQVVTFGDVGSIYRTFKD 266

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            +   +        L   +    + +        +  +           +      K +R
Sbjct: 267 PNGFARVNGEPAIALEVKKRVGANIIETVEEARQIIGQHLTDWEGDLQADYLQDKSKQTR 326

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           +++      VI +   +++   I      AL     +       +   +  G   N+  +
Sbjct: 327 DMLGDLQNNVISAIFLVMVVAIIALGPRPALLVGVAIPGSFLAGILAISALGYTLNIVVL 386

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            +++ ++G  V+  ++  +      +  +  +  +     +        +  S A  ++V
Sbjct: 387 FSLILVVGMLVDGAIITVE---LADRRLSRGMDGKTAYAGAAKRMAWPII-ASTATTLAV 442

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               ++   ++G F   +   ++V   +S+F+A   +  +  
Sbjct: 443 FVPLLFWPGIVGEFMKYLPATVIVTLGASLFMALVFVPVLGG 484


>gi|296390197|ref|ZP_06879672.1| resistance-nodulation-cell division family transporter [Pseudomonas
           aeruginosa PAb1]
          Length = 1036

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 144/492 (29%), Gaps = 24/492 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            + +L     + +   +    +   S +        S       +TL F+  +  +  A 
Sbjct: 51  INALLPGGSPETMASSVATPLEVQFSAIPGITEMTSSSALGTTTLTLQFSLDKSIDVAAQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L VD              S ++    ++  +   IE S         Q
Sbjct: 111 EVQAAINAAAGRLPVDMPNLPTWRKVNPADSPIMI-LRVNSEMMPLIELSDYAETILARQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       Q     +    +  +  P +L     T A +                     
Sbjct: 170 LSQVNGVGQIFVVGQQRPAIRIQAQPEKLAAYQLTLADLRQSLQS--------------- 214

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +          ++   AN          D+          F      I   
Sbjct: 215 -----ASVNLAKGALYGEGRVSTLAANDQLFNASDYDDLVVAYRQGAPVFLKDVARIVSA 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             +   +   +   T +        LR          V      
Sbjct: 270 PEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAALPRLREMLPATIEVDVLNDRTR 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +  GLV++V+ + +      L+    + +++  + A + +LG TL 
Sbjct: 330 TIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVATVLAVSLSASFAAMYVLGFTLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  +++ +G  VD  I+V E I        S   +   G +    T+   + + + A
Sbjct: 390 NLTLVALIIAVGFIVDDAIVVVENIHRHLEAGASKVEAALKGAAEIGFTVISISFSLIAA 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   R FA+++ ++ILIS+  ++++   +    +   +         + 
Sbjct: 450 FIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTLAPMLASRFMPALRHAEAPRKGFAE 509

Query: 531 FFLIPDCIAIQF 542
           +        +++
Sbjct: 510 WLTGGYERGLRW 521



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 95/244 (38%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L  V   + + +   +           LV L+    + V     ++   
Sbjct: 249 VVAYRQGAPVFLKDVARIVSAPEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAAL 308

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ E++P +   +      +  R  + +  + ++++   +++ + +  +   A   + T
Sbjct: 309 PRLREMLPATIEVDVLNDRTRTIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVAT 368

Query: 700 -LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L + ++ +     + G   N   + A++  +G+ V+D +VV + +    +      S  
Sbjct: 369 VLAVSLSASFAAMYVLGFTLNNLTLVALIIAVGFIVDDAIVVVENIH---RHLEAGASKV 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S +   + +P+   GG V      FA+ +   I+++  +S+ +
Sbjct: 426 EAALKGAAEIGFTVISISFSLIAAFIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTL 485

Query: 816 AAPI 819
           A  +
Sbjct: 486 APML 489



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 89/235 (37%), Gaps = 6/235 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                    Q         V L +     V+    ++ V++   EI   STI        +
Sbjct: 790  AAPRSGPLQINHNGMFPAVNLSFNLAAGVSLGEAVQAVQRAQEEIGMPSTIIGVFQGAAQ 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
              +  +    + ++ + IA+ I + + ++ +   L  ++TL       +     +G +F+
Sbjct: 850  AFQSSLASQPLLILAALIAVYIILGVLYESFVHPLTILSTLPSAGIGAVFLLWAWGQDFS 909

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + A+  ++ LIG    + +++ D     +      +S    I ++        + T++AA
Sbjct: 910  IMALIGIVLLIGIVKKNGILMVD--FAIVAQREQGMSAEQAIYQACLTRFRPIMMTTLAA 967

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  +P+ +    G  +     I +  G++V+   ++F    + L +     +  
Sbjct: 968  LLGAIPLMIGFGTGSELRQPLGIAVVGGLLVSQVLTLFSTPVVYLALERLFHRRG 1022


>gi|146340839|ref|YP_001205887.1| multidrug ABC transporter [Bradyrhizobium sp. ORS278]
 gi|146193645|emb|CAL77662.1| Multidrug resistance protein mdtC (Multidrug transporter mdtC)
           [Bradyrhizobium sp. ORS278]
          Length = 1034

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/562 (12%), Positives = 148/562 (26%), Gaps = 38/562 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G +  +   +       FPS         G D            
Sbjct: 10  RRPVGTTLLSIGLFLVGFVAYIFLPVAPVPNVDFPSIFVSAS-RPGAD------------ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +    Q  I + FA  R  +  A  V   +  
Sbjct: 57  -PSVMAATVAAPLERRLGEIAGVDQITSTSSLGQTNIQIQFAIGRDIDKAARDVQAAINA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  D              + V     +                    ++       
Sbjct: 116 ALSDLPSDLPALPRFRKANTAAAPVFV-LALTSKTMTPSAMYDVADTVLAQRLFQVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +    +P  L      T  +    +  N      +F             
Sbjct: 175 NVTVSGADQPAVRIALNPVSLANAGIATDDVRTAIINANPIGPVGIFE------------ 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G        N   +T     DI                ++   +  V    
Sbjct: 223 --------GGRQSETIAVNRQMRTAAEFRDILIKSSNGSFVRLADVADVEDSVRNVRSIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +   T++    L   L+                G    S   
Sbjct: 275 WFNKQPAVLIQIAKQGDANVIETVDRVKALIPELKQWIPAGIEISTLIDRTGTIRASVED 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A LV++V+F+ +      + A  S+ L +  T A + L G ++   S+  + 
Sbjct: 335 MQWTLLATAVLVMVVVFVFLRRLVPTVAAGVSVPLALAGTCAAMWLAGFSIDNLSLMALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E +        S   +   G  +   T+   +++ + A V L F  
Sbjct: 395 ISVGFVVDDAIVMIENMYRNLEHGLSPMRAALDGARQIGFTVLSISLSLVAAFVPLIFMD 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  +R F++T+  +I++S   ++++   +    I+        +        +   +
Sbjct: 455 GVVGRLLREFSLTLTFAIVVSTLVSLTVTPMICAHYIKETLSDRATLFDRIVEGTLSGMV 514

Query: 539 AIQFMRARFWGVGISILFSICS 560
                  R   +   +   +  
Sbjct: 515 RFYTWTLRGVLLYPFLTLLVFF 536



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            +    + A  ++ L +  T     L G   +  ++ A+   +G+ V+D +V+ + M +N
Sbjct: 355 RRLVPTVAAGVSVPLALAGTCAAMWLAGFSIDNLSLMALAISVGFVVDDAIVMIENMYRN 414

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           +      +S          +     +  S++   + +P+    G V   +  F++ + F 
Sbjct: 415 L---EHGLSPMRAALDGARQIGFTVLSISLSLVAAFVPLIFMDGVVGRLLREFSLTLTFA 471

Query: 805 IVVAASSSIFIAAPI 819
           IVV+   S+ +   I
Sbjct: 472 IVVSTLVSLTVTPMI 486



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 75/240 (31%), Gaps = 11/240 (4%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
               L  L +              L+        +    R ++ +                
Sbjct: 794  ERGLSPLAVFHSQAFPSTTVSFNLLPDVPLQAATANIQRAVDELHMPEGIRGGFDGNAGD 853

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
               G      LI   +V + I          +       L  I+TL       L    + 
Sbjct: 854  FNKGNGRQPLLILSALVAMYIVLGV------LYESLAHPLTIISTLPSAGLGALLALQVT 907

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G    + A   ++ LIG    + +++ D   +        +S  D I ++        + 
Sbjct: 908  GTPLTVIAFVGIILLIGIVKKNGIMLVDFALE--AERQRGMSSADAIFEACRVRFRPILM 965

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++AA  + LP+ +    G  +     I +  G++V+   +++    I L I   R ++A
Sbjct: 966  TTLAALFAGLPLVIATGPGTELRRPLGITIIGGLLVSQILTLYTTPVIYLLIDRLRRRSA 1025


>gi|192289933|ref|YP_001990538.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
 gi|192283682|gb|ACF00063.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
          Length = 1050

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/510 (12%), Positives = 148/510 (29%), Gaps = 26/510 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L   +   +   +    ++  S +        S      ++ + F  SR  ++ A 
Sbjct: 47  ISAQLPGADPQTIASSIATPLEQQLSQIPGVVQMTSSSALGVAQLIVQFDLSRTVDSAAV 106

Query: 114 KVTLFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
            V   +   +  L  +      +      E  ++L     D +    ++         + 
Sbjct: 107 DVLAAINAASPFLPPNIPYPPTIRKVNPAETPVMLLALTSDSLPLTTVD--AFAENILLP 164

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           +I             +    +  + DP  L     +  ++       N            
Sbjct: 165 KISQIPGVGLVGIGGQQKPAIRIQVDPEALAARGLSLEEVRSVVAGANVDLPKGTLNSPR 224

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
           +  +      +                            +                   +
Sbjct: 225 VTYTLNTNDQLLKP--------------------DQYDSLIIAYRNGSPVRIRDIGKAVE 264

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                L                     +   T++    L   L+A   P     +     
Sbjct: 265 GPENDLLAGWYNKDRAIILAVQRVPGANVIATVDRIKALLPQLQASLPPAIKVTIAADRT 324

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                + S  + T  +  GLV++V+F+ +      ++   ++ L+++ + A+L LLG +L
Sbjct: 325 QTIRAAVSDVQHTLLLTIGLVVMVIFLFLRNIWATVIPAVTVPLSLVGSFAVLYLLGYSL 384

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
              S+  + + +G  VD  ++V E I        S   +   G +    TI    ++ + 
Sbjct: 385 DNLSLMALSIAVGFVVDDAVVVIENIVRHIENGLSPMQAAIKGSAEIGFTIVSITLSLIA 444

Query: 473 ATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             + LF  GG      + FAIT+  S+++S+  ++++   M   +++ +  K      L 
Sbjct: 445 VFIPLFLMGGYVGKLFQEFAITITASLILSLIISLTLTPMMCARLLKDETHKRHGRIYLV 504

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSIC 559
                   +A+     R           + 
Sbjct: 505 VERAFESLLALYARGLRVVLRHRFATLMVM 534



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 7/132 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I  + M+I++++R  W   + A+ T+ L +  +     L G   +  ++ A+   +G+
Sbjct: 340 LTIGLVVMVIFLFLRNIWATVIPAV-TVPLSLVGSFAVLYLLGYSLDNLSLMALSIAVGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+D VVV + +   ++     +S      K   E     V  +++     +P+ + G  
Sbjct: 399 VVDDAVVVIENI---VRHIENGLSPMQAAIKGSAEIGFTIVSITLSLIAVFIPLFLMGGY 455

Query: 791 -GSVIGSFAIPM 801
            G +   FAI +
Sbjct: 456 VGKLFQEFAITI 467


>gi|68533164|dbj|BAE06006.1| RND multidrug efflux transporter MexN [Pseudomonas aeruginosa]
          Length = 1036

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/573 (12%), Positives = 158/573 (27%), Gaps = 26/573 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            + +L     + +   +    +   S +        S       +TL F+  +  +  A 
Sbjct: 51  INALLPGGSPETMASSVATPLEVQFSAIPGITEMTSSSALGTTTLTLQFSLDKSIDVAAQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L VD              S ++    ++  +   IE S         Q
Sbjct: 111 EVQAAINAAAGRLPVDMPNLPTWRKVNPADSPIMI-LRVNSEMMPLIELSDYAETILARQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       Q     +    +  +  P +L     T A +                     
Sbjct: 170 LSQVNGVGQIFVVGQQRPAIRIQAQPEKLAAYQLTLADLRQSLQS--------------- 214

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +          ++   AN          D+          F      I   
Sbjct: 215 -----ASVNLAKGALYGEGRVSTLAANDQLFNASDYDDLVVAYRQGAPVFLKDVARIVSA 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             +   +   +   T +        LR          V      
Sbjct: 270 PEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAALPRLREMLPATIEVDVLNDRTR 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +  GLV++V+ + +      L+    + +++  + A + +LG TL 
Sbjct: 330 TIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVATVLAVSLSASFAAMYVLGFTLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  +++ +G  VD  I+V E I        S   +   G +    T+   + + + A
Sbjct: 390 NLTLVALIIAVGFIVDDAIVVVENIHRHLEAGASKVEAALKGAAEIGFTVISISFSLIAA 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   R FA+++ ++ILIS+  ++++   +    +   +         + 
Sbjct: 450 FIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTLAPMLASRFMPALRHAEAPRKGFAE 509

Query: 531 FFLIPDCI--AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +                R   VG +    +     +      + +     +     A   
Sbjct: 510 WLTGGYERGLRWALGHQRLMLVGFAFTVLVAVAGYVGIPKGFFPLQDTAFVIGTSQAAED 569

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
           +    + +    L     S        + +   
Sbjct: 570 ISYDDMVAKHRQLAEIIASDPAVQSYNHAVGVT 602



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 95/244 (38%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L  V   + + +   +           LV L+    + V     ++   
Sbjct: 249 VVAYRQGAPVFLKDVARIVSAPEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAAL 308

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ E++P +   +      +  R  + +  + ++++   +++ + +  +   A   + T
Sbjct: 309 PRLREMLPATIEVDVLNDRTRTIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVAT 368

Query: 700 -LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L + ++ +     + G   N   + A++  +G+ V+D +VV + +    +      S  
Sbjct: 369 VLAVSLSASFAAMYVLGFTLNNLTLVALIIAVGFIVDDAIVVVENIH---RHLEAGASKV 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S +   + +P+   GG V      FA+ +   I+++  +S+ +
Sbjct: 426 EAALKGAAEIGFTVISISFSLIAAFIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTL 485

Query: 816 AAPI 819
           A  +
Sbjct: 486 APML 489



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 89/235 (37%), Gaps = 6/235 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                    Q         V L +     V+    ++ V++   EI   STI        +
Sbjct: 790  AAPRSGPLQINHNGMFPAVNLSFNLAAGVSLGEAVQAVQRAQEEIGMPSTIIGVFQGAAQ 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
              +  +    + ++ + IA+ I + + ++ +   L  ++TL       +     +G +F+
Sbjct: 850  AFQSSLASQPLLILAALIAVYIILGVLYESFVHPLTILSTLPSAGIGAVFLLWAWGQDFS 909

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + A+  ++ LIG    + +++ D     +      +S    I ++        + T++AA
Sbjct: 910  IMALIGIVLLIGIVKKNGILMVD--FAIVAQREQGMSAEQAIYQACLTRFRPIMMTTLAA 967

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  +P+ +    G  +     I +  G++V+   ++F    + L +     +  
Sbjct: 968  LLGAIPLMIGFGTGSELRQPLGIAVVGGLLVSQVLTLFSTPVVYLALERLFHRRG 1022


>gi|220924032|ref|YP_002499334.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
 gi|219948639|gb|ACL59031.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
          Length = 1095

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/559 (11%), Positives = 155/559 (27%), Gaps = 33/559 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +   P       +             +     + +   +    +     +     
Sbjct: 29  FVRLPVAPLPQVDFPTIL---------VQAQMAGASPETMAATVAAPLERRLGQIADVDQ 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +    Q +I L FA  R     A  V   +    + L    ++N          + +
Sbjct: 80  MTSTSSTGQTRIVLQFALERDINGAARDVQAAINAARADLPAALRQNPTYRKFNPADAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L    +                    ++   +       S   L  +  E +P  L    
Sbjct: 140 LI-IGLTSKTLSPSALYDSAATVVQQKLSQLDGIGNVDASGSSLPAVRVELEPGALFHYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
                                                      +        AN   +  
Sbjct: 199 IGLE--------------------GIRAAIASANANSPKGAIETQTRRYQLYANDQGRVA 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
               DI                 +   +    +  ++        I   +   +    ++
Sbjct: 239 ADYQDIVVAYRNGAAVRLRDVGQVIDGVEDRRNLGLINGQPGVLLIVYKQPGGNVVEAVD 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   ++A        +V          S +  + T  I  GLV++V+F+ +  G+ 
Sbjct: 299 RLKAALPQIKAALPGDIDLVVTGDRSRTIRASLAEAERTLMISVGLVILVVFLFLRSGRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ ++++ T A + L   +L   S+  +++  G  VD  I+V E I+    + +
Sbjct: 359 TLIPAVAVPISLVGTFAAMYLCDYSLDNISLMALIIAAGFVVDDAIVVLENIQRHIEEGR 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
               +  +G      T+   +++ +   + +   G   G   + FA+ + L+ILIS+  +
Sbjct: 419 PRLEAALLGAREVGFTVLSMSLSLVAVFIPILLMGGLIGRFFQEFAVVLSLAILISLVLS 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           ++    M   ++                 +  D +   + R   W +    +  +  +  
Sbjct: 479 LTTTPMMCARLLTPGPHGRRPNLVARALEVGFDLLLRGYGRTLAWALRHGAIVMLVLLGA 538

Query: 564 LFTHGLNYGIDFKGGIQLG 582
           +  +   + I  KG     
Sbjct: 539 VGLNVYLFVIVPKGFFPQQ 557



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 66/195 (33%), Gaps = 7/195 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A  R+   + +    +     +  T      I   L       +I   + +L+      
Sbjct: 295 EAVDRLKAALPQIKAALPGDIDLVVTGDRSRTIRASLAEAERTLMISVGLVILVVFLFLR 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + +  T     L     +  ++ A++   G+ V+D +VV + +    
Sbjct: 355 SGRATLIPAVAVPISLVGTFAAMYLCDYSLDNISLMALIIAAGFVVDDAIVVLENI---Q 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +         +       E     +  S++     +P+ + GG +      FA+ ++  I
Sbjct: 412 RHIEEGRPRLEAALLGAREVGFTVLSMSLSLVAVFIPILLMGGLIGRFFQEFAVVLSLAI 471

Query: 806 VVAASSSIFIAAPIL 820
           +++   S+    P++
Sbjct: 472 LISLVLSL-TTTPMM 485


>gi|15596633|ref|NP_250127.1| Resistance-Nodulation-Cell Division (RND) efflux transporter
           [Pseudomonas aeruginosa PAO1]
 gi|9947386|gb|AAG04825.1|AE004573_4 probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa PAO1]
          Length = 1036

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 144/492 (29%), Gaps = 24/492 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            + +L     + +   +    +   S +        S       +TL F+  +  +  A 
Sbjct: 51  INALLPGGSPETMASSVATPLEVQFSAIPGITEMTSSSALGTTTLTLQFSLDKSIDVAAQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L VD              S ++    ++  +   IE S         Q
Sbjct: 111 EVQAAINAAAGRLPVDMPNLPTWRKVNPADSPIMI-LRVNSEMMPLIELSDYAETILARQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       Q     +    +  +  P +L     T A +                     
Sbjct: 170 LSQVNGVGQIFVVGQQRPAIRIQAQPEKLAAYQLTLADLRQSLQS--------------- 214

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +          ++   AN          D+          F      I   
Sbjct: 215 -----ASVNLAKGALYGEGRVSTLAANDQLFNASDYDDLVVAYRQGAPVFLKDVARIVSA 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             +   +   +   T +        LR          V      
Sbjct: 270 PEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAALPRLREMLPATIEVDVLNDRTR 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +  GLV++V+ + +      L+    + +++  + A + +LG TL 
Sbjct: 330 TIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVATVLAVSLSASFAAMYVLGFTLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  +++ +G  VD  I+V E I        S   +   G +    T+   + + + A
Sbjct: 390 NLTLVALIIAVGFIVDDAIVVVENIHRHLEAGASKVEAALKGAAEIGFTVISISFSLIAA 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   R FA+++ ++ILIS+  ++++   +    +   +         + 
Sbjct: 450 FIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTLAPMLASRFMPALRHAEAPRKGFAE 509

Query: 531 FFLIPDCIAIQF 542
           +        +++
Sbjct: 510 WLTGGYERGLRW 521



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 95/244 (38%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L  V   + + +   +           LV L+    + V     ++   
Sbjct: 249 VVAYRQGAPVFLKDVARIVSAPEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAAL 308

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ E++P +   +      +  R  + +  + ++++   +++ + +  +   A   + T
Sbjct: 309 PRLREMLPATIEVDVLNDRTRTIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVAT 368

Query: 700 -LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L + ++ +     + G   N   + A++  +G+ V+D +VV + +    +      S  
Sbjct: 369 VLAVSLSASFAAMYVLGFTLNNLTLVALIIAVGFIVDDAIVVVENIH---RHLEAGASKV 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S +   + +P+   GG V      FA+ +   I+++  +S+ +
Sbjct: 426 EAALKGAAEIGFTVISISFSLIAAFIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTL 485

Query: 816 AAPI 819
           A  +
Sbjct: 486 APML 489



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 89/235 (37%), Gaps = 6/235 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                    Q         V L +     V+    ++ V++   EI   STI        +
Sbjct: 790  AAPRSGPLQINHNGMFPAVNLSFNLAAGVSLGEAVQAVQRAQEEIGMPSTIIGVFQGAAQ 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
              +  +    + ++ + IA+ I + + ++ +   L  ++TL       +     +G +F+
Sbjct: 850  AFQSSLASQPLLILAALIAVYIILGVLYESFVHPLTILSTLPSAGIGAVFLLWAWGQDFS 909

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + A+  ++ LIG    + +++ D     +      +S    I ++        + T++AA
Sbjct: 910  IMALIGIVLLIGIVKKNGILMVD--FAIVAQREQGMSAEQAIYQACLTRFRPIMMTTLAA 967

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  +P+ +    G  +     I +  G++V+   ++F    + L +     +  
Sbjct: 968  LLGAIPLMIGFGTGSELRQPLGIAVVGGLLVSQVLTLFSTPVVYLALERLFHRRG 1022


>gi|116049381|ref|YP_791816.1| putative RND efflux transporter [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584602|gb|ABJ10617.1| putative RND efflux transporter [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 1036

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 144/492 (29%), Gaps = 24/492 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            + +L     + +   +    +   S +        S       +TL F+  +  +  A 
Sbjct: 51  INALLPGGSPETMASSVATPLEVQFSAIPGITEMTSSSALGTTTLTLQFSLDKSIDVAAQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L VD              S ++    ++  +   IE S         Q
Sbjct: 111 EVQAAINAAAGRLPVDMPNLPTWRKVNPADSPIMI-LRVNSEMMPLIELSDYAETILARQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       Q     +    +  +  P +L     T A +                     
Sbjct: 170 LSQVNGVGQIFVVGQQRPAIRIQAQPEKLAAYQLTLADLRQSLQS--------------- 214

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +          ++   AN          D+          F      I   
Sbjct: 215 -----ASVNLAKGALYGEGRVSTLAANDQLFNASDYDDLVVAYRQGAPVFLKDVARIVSA 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             +   +   +   T +        LR          V      
Sbjct: 270 PEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAALPRLREMLPATIEVDVLNDRTR 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +  GLV++V+ + +      L+    + +++  + A + +LG TL 
Sbjct: 330 TIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVATVLAVSLSASFAAMYVLGFTLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  +++ +G  VD  I+V E I        S   +   G +    T+   + + + A
Sbjct: 390 NLTLVALIIAVGFIVDDAIVVVENIHRHLEAGASKVEAALKGAAEIGFTVISISFSLIAA 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   R FA+++ ++ILIS+  ++++   +    +   +         + 
Sbjct: 450 FIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTLAPMLASRFMPALRHAEAPRKGFAE 509

Query: 531 FFLIPDCIAIQF 542
           +        +++
Sbjct: 510 WLTGGYERGLRW 521



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 95/244 (38%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L  V   + + +   +           LV L+    + V     ++   
Sbjct: 249 VVAYRQGAPVFLKDVARIVSAPEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAAL 308

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ E++P +   +      +  R  + +  + ++++   +++ + +  +   A   + T
Sbjct: 309 PRLREMLPATIEVDVLNDRTRTIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVAT 368

Query: 700 -LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L + ++ +     + G   N   + A++  +G+ V+D +VV + +    +      S  
Sbjct: 369 VLAVSLSASFAAMYVLGFTLNNLTLVALIIAVGFIVDDAIVVVENIH---RHLEAGASKV 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S +   + +P+   GG V      FA+ +   I+++  +S+ +
Sbjct: 426 EAALKGAAEIGFTVISISFSLIAAFIPLLFMGGIVGRLFREFAVSVTVAILISVVASLTL 485

Query: 816 AAPI 819
           A  +
Sbjct: 486 APML 489



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 89/235 (37%), Gaps = 6/235 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                    Q         V L +     V+    ++ V++   EI   STI        +
Sbjct: 790  AAPRSGPLQINHNGMFPAVNLSFNLAAGVSLGEAVQAVQRAQEEIGMPSTIIGVFQGAAQ 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
              +  +    + ++ + IA+ I + + ++ +   L  ++TL       +     +G +F+
Sbjct: 850  AFQSSLASQPLLILAALIAVYIILGVLYESFVHPLTILSTLPSAGIGAVFLLWAWGQDFS 909

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + A+  ++ LIG    + +++ D     +      +S    I ++        + T++AA
Sbjct: 910  IMALIGIVLLIGIVKKNGILMVD--FAIVAQREQGMSAEQAIYQACLTRFRPIMMTTLAA 967

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  +P+ +    G  +     I +  G++V+   ++F    + L +     +  
Sbjct: 968  LLGAIPLMIGFGTGSELRQPLGIAVVGGLLVSQVLTLFSTPVVYLALERLFHRRG 1022


>gi|222085331|ref|YP_002543861.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
 gi|221722779|gb|ACM25935.1| multidrug efflux transporter protein [Agrobacterium radiobacter
           K84]
          Length = 1039

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/683 (10%), Positives = 173/683 (25%), Gaps = 51/683 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +   GL            +   P                     L   
Sbjct: 8   QRPVATTLLALGVVMAGLA-----GYQLVPVAALPQVDFPTV---------NVTAQLTGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +     +    +        +       I L F  SR  +  A  V   +  
Sbjct: 54  SPQTMATSVSTPLIKQFETIPGISEISSTNSLGNTSIVLQFDLSRDIDAAAADVQAAISN 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  +         T      I+L     D +    +++  E I      +      
Sbjct: 114 ATRQLPDNLTVPPSYRKTNPADAPILLLAVQSDTMPRSKLDEIAEDI--ISPSLSTISGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  E DPS+L+        ++      N+         +    +    
Sbjct: 172 AQVTVYGAQTYAVRVEVDPSKLQDRGIGIDTVNTALANANSQVPIGTLQNKSQSMTVNAN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + +                     +    +                ++   +     G
Sbjct: 232 TQLLNA--------------------QQFRTLVIANPNGAPIHLSDVADVQDSVENTNTG 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    ++        L A         +   +      + +
Sbjct: 272 SWYDGKRAIILAVQRQPDANTVDVVDAINAKLPQLHAEIPASVKTSIMNDSAQPIRDAIA 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +   LV++V+++        ++   ++ L++I T  ++ +LG ++   S+ G+
Sbjct: 332 DVKFTLMLTISLVVLVIYLFTGKLMATIIPGLAVPLSLIATFGMMYVLGYSVDNISLLGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL VD  I++ E I     +   V  +   G +    TI   +I+ +   + +   
Sbjct: 392 TLAVGLVVDDAIVMLENILRHVEEGMPVLQAAIKGSAEVSYTIISMSISLIAVFIPILLM 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G     F + + ++I+ S   ++++   +   +    +   + +   +  F     
Sbjct: 452 GGVVGRIFNEFGMVVAIAIVSSAIVSLTVTPMLSSRLSNDHRPPPLPVRLFNIGFDWVQR 511

Query: 538 IAIQFMRARFW-----------GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              + +                 +G+S+   +      F       +      +  +   
Sbjct: 512 GYDRGVAWCLRNRGIVLLCFAGSIGLSVYLFMVLPASFFPQEDIGRLQISTQARQDISYT 571

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              DL    +             +  G               +      E +   + E+ 
Sbjct: 572 AMRDLQNQAAAAIKQNPAVAHVMSIVGGNARQPLNNGTMFVELKPKDQREPLDTTLRELR 631

Query: 647 PLSTIQNTEIVGPKISRELIRKG 669
                           + L   G
Sbjct: 632 ASIGKIAGIKAFITPQQSLRFGG 654



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 90/263 (34%), Gaps = 12/263 (4%)

Query: 565 FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
            T   N  +      +  V+AN       +    +     + +      +    + L  Q
Sbjct: 226 MTVNANTQLLNAQQFRTLVIANPNGAPIHLSDVADVQDSVENTNTGSWYDGKRAIILAVQ 285

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-----KGIVGVIISAIA 679
                    V++ +  K+ ++           +    ++ +       K  + + IS + 
Sbjct: 286 RQPDANTVDVVDAINAKLPQLHAEIPASVKTSIMNDSAQPIRDAIADVKFTLMLTISLVV 345

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ++IY+    K    +     + L +  T G   + G   +  ++  +   +G  V+D +V
Sbjct: 346 LVIYL-FTGKLMATIIPGLAVPLSLIATFGMMYVLGYSVDNISLLGLTLAVGLVVDDAIV 404

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---S 796
           + + +   ++     +       K   E     +  S++     +P+ + GG V      
Sbjct: 405 MLENI---LRHVEEGMPVLQAAIKGSAEVSYTIISMSISLIAVFIPILLMGGVVGRIFNE 461

Query: 797 FAIPMAFGIVVAASSSIFIAAPI 819
           F + +A  IV +A  S+ +   +
Sbjct: 462 FGMVVAIAIVSSAIVSLTVTPML 484



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 98/272 (36%), Gaps = 5/272 (1%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                +    +       +         V  SN   ++            +     + +  
Sbjct: 749  IVEFDTSKPWDDQKLQEIQIASASGALVPLSNFAHVERTTGPVTINQTGQLVSTTVSFNL 808

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                A       +++   ++   + +  +     +I ++        ++ + + + + + 
Sbjct: 809  PAGEALGDATAQIEQIKKDLNVPADVFTSYGGTAQIFQQSQGSTPYLILAAVLTIYVVLG 868

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++ +   L  ++ L       L    LFG + ++ A+  +L LIG    + +++ D  
Sbjct: 869  VLYESFIHPLTILSGLPAAALGALLALKLFGFDLSIIALIGLLMLIGIVKKNAIMMIDVA 928

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPM 801
             + ++  T+ IS  + I ++        + T+  A +  LP+AV GG    +     I +
Sbjct: 929  LETLRS-TSGISPAEAIHEACVRRFRPIMMTTFCALLGALPIAVGGGASSELRQPLGIAV 987

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              G+VV+   ++FI   I L +        R+
Sbjct: 988  VGGLVVSQILTLFITPVIFLEMNRLNDFVGRL 1019


>gi|153953718|ref|YP_001394483.1| transporter protein [Clostridium kluyveri DSM 555]
 gi|219854338|ref|YP_002471460.1| hypothetical protein CKR_0995 [Clostridium kluyveri NBRC 12016]
 gi|146346599|gb|EDK33135.1| Predicted transporter protein [Clostridium kluyveri DSM 555]
 gi|219568062|dbj|BAH06046.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1044

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/492 (11%), Positives = 143/492 (29%), Gaps = 34/492 (6%)

Query: 45  SLGLDLRGGSHL-------VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK 97
           +LG DL    ++              + +   +    ++  + +        +  +   +
Sbjct: 31  NLGADLMPSINIPVISISTTYSGASAEDIKKDVVKPIEDSVAGISGIDTLQSTASEGYGQ 90

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
            T+ F            V   +    +KL  +  K LL       + +++   + +    
Sbjct: 91  TTIMFKSDANMNTAFLDVQKAVDTAQAKLPKNADKPLLFKMDTNAMPVLMLSVSGNVSHE 150

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
               +S        D +   E             QL  + D + +      T+ +     
Sbjct: 151 ELYNESN----NITDSLKKVEGVGNVSLLGTQQKQLIIKLDKAAVEFYGVNTSLLISKLQ 206

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
             N S          L ++      +ED                       + ++     
Sbjct: 207 SDNVSFPAGQIKQDNLNETVRIMSQLED--------------------IDEIKNLLIPTS 246

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
                      +I            +            ++  +   T+         ++ 
Sbjct: 247 IGGTVRLSDIADINLEYPDENQYIRINGKDTIGISIQKQSDANVIETVNNINAELEKVKK 306

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
                   +    +      S +  K T         +VLF+ +   K  L+   +I  +
Sbjct: 307 RLPKGINLVAAYDSTKFITSSLTEIKRTLIEGIITTALVLFIFLKSWKSSLIVLVAIPTS 366

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           +I T  ++ ++  TL + S+ G+ L IG+ VD +I+V + I++     +    +   G +
Sbjct: 367 LIATFFMMYVMKFTLNMMSLMGLSLCIGILVDDSIVVLDNIKQHLSMKKHPHQAAIDGRN 426

Query: 458 R---AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               A   I   ++        +    G   + F +T+  + L S+F + +I   +   +
Sbjct: 427 EIGLAAIAITLCDVVVFAPVAFISGMAGQFFKEFGLTIAFAALFSLFVSFTITPMLASRV 486

Query: 515 IRYKKMKSIDIN 526
            +         +
Sbjct: 487 FKGNDDNHKKAS 498



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 76/225 (33%), Gaps = 21/225 (9%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +    V              V + + KK+  +      Q       +         I  +
Sbjct: 814  QDRQDVATVSANIQGRPLGAVSKDLTKKLEPLSVPEGYQIKFGGNQESMSTNFTSLIEVL 873

Query: 674  IISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            IIS + + +I + +   +      + +L   +   +G  A+ G   N+ ++   + L G 
Sbjct: 874  IISLVLIYMILVVLYESFLTPFIRMISLPCALIGAIGILAITGKTLNMMSLIGFIMLDGL 933

Query: 733  S-------VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +       ++              L     + R+ + +S    L   + TS    + +LP
Sbjct: 934  ASKNGTLLIDYT----------NTLMKRGKNLREALIESGERRLRPIIMTSATMIVGMLP 983

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             A+    G  +  S A+ +  G++ +   +  I   +   + D++
Sbjct: 984  SALSLGEGSEIKSSMALVVIGGMIASTILTPIILPVVYTLLDDFK 1028



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/211 (16%), Positives = 79/211 (37%), Gaps = 9/211 (4%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                     LE VKK++ + + L    ++         E+ R  I G+I +A+ + I++
Sbjct: 291 IETVNNINAELEKVKKRLPKGINLVAAYDSTKFITSSLTEIKRTLIEGIITTALVLFIFL 350

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W  +L  +  +   +  T     +     N+ ++  +   IG  V+D +VV D +
Sbjct: 351 ---KSWKSSLIVLVAIPTSLIATFFMMYVMKFTLNMMSLMGLSLCIGILVDDSIVVLDNI 407

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
           ++++ +               NE    ++  ++   +   P+A      G     F + +
Sbjct: 408 KQHLSMKKH---PHQAAIDGRNEIGLAAIAITLCDVVVFAPVAFISGMAGQFFKEFGLTI 464

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           AF  + +   S  I   +   ++     N +
Sbjct: 465 AFAALFSLFVSFTITPMLASRVFKGNDDNHK 495



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/539 (10%), Positives = 153/539 (28%), Gaps = 55/539 (10%)

Query: 7    LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             V++ S+   IG ++ +P        +  PS    +            ++ +  D     
Sbjct: 540  RVLIISIAALIGTILLIPAG--AIGTELIPSTDQSS-----------FNINMTFDS-GAT 585

Query: 67   NGFLQMYSDELRSFLKKEGIGVF-------------SMRQIQNKITLSFADSRFKENIAD 113
               +     ++ ++L                     S       I +       +     
Sbjct: 586  LNQMDKSVKQVENYLHGVKEIKTYYAMVGSSGDSVNSSTSNTASIYVELYPKDERTISQS 645

Query: 114  KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +V   ++   +        +++ +      S  +S   +        E S ++       
Sbjct: 646  EVAKKVRSWGNASLSGTDFSVVESDISSGSSKPISIQILGDDSDTINEISNKVEETIKTV 705

Query: 174  IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
             GI++       S   L       D     Q   + + +S             ++  +  
Sbjct: 706  SGITDVDNSTKASDSELKVQM---DRLAASQYGVSISDLSSVLRTAIQGSSAGIYTTKGD 762

Query: 234  RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                         V+ +  ++  A+     K              A+     +  +I + 
Sbjct: 763  DYDI--------TVKFNDKYVKTASDIGSIKIISSSGQSVPISEVAKIVKADSPKSISRQ 814

Query: 294  LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                          +     + + +  G  + +    L  +       IK    +E    
Sbjct: 815  DRQD----------VATVSANIQGRPLGAVSKDLTKKLEPLSVPEGYQIKFGGNQESMST 864

Query: 354  ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                   +   +  ++  +++++    +       +   S+   +I  + +L++ G TL 
Sbjct: 865  NFTSLIEVLIISLVLIYMILVVLYESFL----TPFIRMISLPCALIGAIGILAITGKTLN 920

Query: 414  LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            + S+ G ++  GLA  +  L+ +      ++ +++  +L     R    I  ++ T ++ 
Sbjct: 921  MMSLIGFIMLDGLASKNGTLLIDYTNTLMKRGKNLREALIESGERRLRPIIMTSATMIVG 980

Query: 474  TVV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             +        G       A+ +   ++ S      I+  +   +  +K      I    
Sbjct: 981  MLPSALSLGEGSEIKSSMALVVIGGMIASTILTPIILPVVYTLLDDFKNYMLRKIKKHP 1039


>gi|146299028|ref|YP_001193619.1| acriflavin resistance protein [Flavobacterium johnsoniae UW101]
 gi|146153446|gb|ABQ04300.1| acriflavin resistance protein [Flavobacterium johnsoniae UW101]
          Length = 1058

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/661 (10%), Positives = 182/661 (27%), Gaps = 52/661 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++L++++   GL         Q   +  P                    V    
Sbjct: 9   KRPSLVIVLFTILTLGGLFS-----YSQLGYELIPKFETNVIT---------VSTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + L+          +  + ++++   +   +   +     +  
Sbjct: 55  SPSEVENTVTKKIEDAIASLENIKKIDSKSYESLSVVSITLTSNANVDISMNDAQRKINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D     L   +  ++ I+                   I ++    +   +   
Sbjct: 115 ILSDLPDDADPPSLTKFSLSDLPIMTL---GANGKMDEAAFYDLIDKKIAPVLSRVQGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D  +++    +  ++    +                     N  
Sbjct: 172 QVNIIGGQEREIQVNLDAVKMQGYGLSVPQVQQTILTS-------------------NLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                ++     +    A       +    +   + G +       D            R
Sbjct: 213 FPTGNIQTRNQKILIRLAGKYKNVEELRNLVVSSQNGIQVRLGDIADVQDTQKIAEKIAR 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V     I   I       +   + +    +  +            + + +    L +   
Sbjct: 273 VDQKSAIVLQIVKQSDANAVAVSEQLVKTIKTLESDYKSAQLKLEIAKDSTVFTLEAADS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I   LV  V+   +   +  L+   SI  ++I T   + LLG TL L S+ G+ 
Sbjct: 333 VVHDLLIAVILVAFVMLFFLHSIRNSLIVMVSIPASLIATFIGIYLLGYTLNLMSLLGLS 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+V E I       +S   +   G +    T+    +  ++  + +    
Sbjct: 393 LVVGILVDDAIVVLENIYRHMEMGKSRIRAAYDGTAEIGGTVTSITLVIVVVFLPIAMST 452

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------------MKSIDI 525
           G     +  F +T+ +S + S+  + +I+  +     + +               +S   
Sbjct: 453 GLVSNIITQFCVTVIISTMFSLLASFTIIPWLSSRFGKLEHIEGKNLFGKVILGFESYLT 512

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   + +     +++     + +        +   +  G  +     G   + +  
Sbjct: 513 RFTDWVSNLLNWCLDHYIKTMAIVLVMFFGSIFWLMGGGYIGGEFFAASDSGEFLVQIEM 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +   L       +  +      +    +   + +     G + A     E+  K I + 
Sbjct: 573 PKDASLEQTNFMTQKAEAFLKGEKYVLSQITTVGQTSEGLGAAQATAYKAEIDVKMIEQK 632

Query: 646 V 646
            
Sbjct: 633 D 633



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 81/256 (31%), Gaps = 12/256 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + V      D+   +   E +   D             +  Q          +++
Sbjct: 245 SSQNGIQVRLGDIADVQDTQKIAEKIARVDQKSAIV-----LQIVKQSDANAVAVSEQLV 299

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFAL 694
           + +K   ++                 + E     +  ++I+ I +  + ++       +L
Sbjct: 300 KTIKTLESDYKSAQLKLEIAKDSTVFTLEAADSVVHDLLIAVILVAFVMLFFLHSIRNSL 359

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             + ++   +  T     L G   NL ++  +  ++G  V+D +VV + +    +     
Sbjct: 360 IVMVSIPASLIATFIGIYLLGYTLNLMSLLGLSLVVGILVDDAIVVLENI---YRHMEMG 416

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAFGIVVAASSSI 813
            S          E  G    TS+   I V+ +       ++ +        ++++   S+
Sbjct: 417 KSRIRAAYDGTAEIGGT--VTSITLVIVVVFLPIAMSTGLVSNIITQFCVTVIISTMFSL 474

Query: 814 FIAAPILLFIYDWRAK 829
             +  I+ ++     K
Sbjct: 475 LASFTIIPWLSSRFGK 490


>gi|302339723|ref|YP_003804929.1| protein-export membrane protein SecD [Spirochaeta smaragdinae DSM
           11293]
 gi|301636908|gb|ADK82335.1| protein-export membrane protein SecD [Spirochaeta smaragdinae DSM
           11293]
          Length = 575

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 110/289 (38%), Gaps = 5/289 (1%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R+  V   +      I                   L              +   +L I 
Sbjct: 285 RRWVVVREEVGLDGSHIQNATVGNHPVTGKPVINFTLDQEGGEIFFQLTSTNQKGTLAIL 344

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                      N  +R + Q      +      +  +   +     I N + VG  +  +
Sbjct: 345 MDDKVKSMAVINEPIRERVQMSGFDRKEANDLALVLRTAAMPVDLKINNQQAVGASLGED 404

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            +R+G+  + +S I ++I++ + ++    + +   LIL++   +   + F +   LT++A
Sbjct: 405 SVRQGLKAITLSFILVIIFMLLYYQV-AGIVSDIALILNLVIMVSILSAFNLTLTLTSIA 463

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++  +G +V+  V++++R+++  +L     +          +     +  ++  FI+ L
Sbjct: 464 GLILTVGMAVDANVIIFERIKEEYRL---GKTPEASAKAGFRKAFWTIMDANITTFIAAL 520

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++  G   +  FA  +A GIV +  +++F++  ++      + K  ++
Sbjct: 521 VLSQLGSGPVQGFANTLAVGIVSSMFTALFVSR-LIFDFGIEQLKVKKL 568



 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 134/407 (32%), Positives = 219/407 (53%), Gaps = 34/407 (8%)

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
              + A++++MEI+  RID+ G++E  I++ G+++I I +PG  DP R+   L     +S
Sbjct: 169 DDQNQAVQRAMEILNNRIDKFGVTEPQIRQQGTNQINIDIPGAADPERVNSFLMGKGSLS 228

Query: 214 FHKVLPN--------------------------------NSKKGFMFGVRFLRDSDGNQY 241
           FH V                                      +GF     +  D      
Sbjct: 229 FHIVDQELSQKVVQYFQQNPTKAYDDQGHVITPDFVPAGYIVRGFYEKDSYGIDQLRRWV 288

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +V ++V + G H+  AT    P T KPV++ + D+ G   FF++T  N    LA+++D +
Sbjct: 289 VVREEVGLDGSHIQNATVGNHPVTGKPVINFTLDQEGGEIFFQLTSTNQKGTLAILMDDK 348

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V +  VIN+ I          F  + A  LA +LR  ++P+ L I  ++ VGA LG DS+
Sbjct: 349 VKSMAVINEPIRERVQMSG--FDRKEANDLALVLRTAAMPVDLKINNQQAVGASLGEDSV 406

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G  AI    +L+++FM++ Y   G+V+D ++ LN+++ +++LS    TLTL SIAG++
Sbjct: 407 RQGLKAITLSFILVIIFMLLYYQVAGIVSDIALILNLVIMVSILSAFNLTLTLTSIAGLI 466

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+++ ERI+EE R  ++   S   GF +A+ TI D+NIT  IA +VL   G
Sbjct: 467 LTVGMAVDANVIIFERIKEEYRLGKTPEASAKAGFRKAFWTIMDANITTFIAALVLSQLG 526

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            G V+GFA T+ + I+ SMFTA+ + R +  F I   K+K + I   
Sbjct: 527 SGPVQGFANTLAVGIVSSMFTALFVSRLIFDFGIEQLKVKKLSIGWR 573


>gi|163854842|ref|YP_001629140.1| AcrB/AcrD/AcrF family protein [Bordetella petrii DSM 12804]
 gi|163258570|emb|CAP40869.1| AcrB/AcrD/AcrF family protein [Bordetella petrii]
          Length = 1038

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/585 (11%), Positives = 162/585 (27%), Gaps = 42/585 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                V+L   +   G+L           +   P                   +   L  
Sbjct: 10  RPVATVLLCLGLVLAGVLS-----FRLLPVAPLPEVDLPI-----------ISVTANLPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    +     +           Q   +ITL F  SR  +  A  V   + 
Sbjct: 54  ASPETMASSVATPLERSLGSIAGVTEMTSRNSQGSTRITLQFDLSRDIDGAARDVQAAIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S L    + N          + ++    +                    ++      
Sbjct: 114 AARSLLPTGLRSNPTYHKVNPSSAPIMV-LALTSDTLSQGRLYDLASTIVAQKLAQVNGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +       L  +     P  L     +  ++                            
Sbjct: 173 GEVTVGGSSLPAVRVNLIPGALSSRGVSLDEVRATLTE--------------------AN 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                 V  +  +     A+   +  +    +                 +   +  +   
Sbjct: 213 ANRPKGVVENDRYHWQIMASDQLERAEQYRPLVVAWRDGAAVRLSDVATVEDSVEDLFQT 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      I   +A  +   T+E        L A         V +    +   S  
Sbjct: 273 GFYNNRQAILLILRRQADANIIETVEAIRAQLPQLAALLPGDVDMTVAQDRTPSIRASLH 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  +   LV++V+ + + + +  L+   ++ ++++ T  ++ L G TL   S+  +
Sbjct: 333 EAELTLVVAVALVMLVVLLFLRHWRAALIPSVAVPVSLVGTFCIMYLCGYTLNTISLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++  G  VD  I+V E I     +  S   +   G      T+   +++ +   + +   
Sbjct: 393 IVATGFVVDDAIVVLENIMRHIEQGASPMRAALRGSREVGFTVLSMSLSLVAVFIPILLM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FA+T+  +I++S+  ++++   M   ++R +                 D 
Sbjct: 453 GGVVGRLFREFAVTLSAAIMVSLVVSLTLTPMMCARLLRTQDHGRAPGRLSRAIGRGFDA 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           +  ++ R+  W +    +  +     +  +   Y +  KG     
Sbjct: 513 VLARYRRSLSWALAHGRIMLLLLAAAIGLNVYLYAVVPKGFFPQQ 557



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 53/131 (40%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL     + + +  T     L G   N  ++ A++   G+ V+D +VV + +   M+
Sbjct: 356 WRAALIPSVAVPVSLVGTFCIMYLCGYTLNTISLMALIVATGFVVDDAIVVLENI---MR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                 S      +   E     +  S++     +P+ + GG V      FA+ ++  I+
Sbjct: 413 HIEQGASPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGGVVGRLFREFAVTLSAAIM 472

Query: 807 VAASSSIFIAA 817
           V+   S+ +  
Sbjct: 473 VSLVVSLTLTP 483



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 93/283 (32%), Gaps = 11/283 (3%)

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              S          L  + +  G+  +       L    V     R    +      S   
Sbjct: 733  SFSQRQVSVMYGPLNQYHVVMGVVQRFAQDAESLKQVHVITQDGRRVPLAAFAHFESGNA 792

Query: 611  FDGEKNFLVRLQYQPGDS-----VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                ++  +    +   +          +  +        +P   IQ   +      +E+
Sbjct: 793  PLSVRHNGLLAADEISFNLAPGVSLDQAIRAIDAAVARIGLPSDQIQAGFLGTAAAQQEV 852

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              +    ++ + + M I + I ++     L  ++TL       L    L G EF + A+ 
Sbjct: 853  QSQQPWLILGALVTMYIVLGILYENLVHPLTILSTLPSAGIGALLALMLVGSEFTIIALI 912

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V  LIG    + +++ D            +S RD I ++        + T++AA    L
Sbjct: 913  GVFLLIGIVKKNAIMMVDFALD--AERRRGLSPRDAIFEACLTRFRPIMMTTLAAIFGAL 970

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            P+ +    G  +     + +  G++++   +++    + L++ 
Sbjct: 971  PLVLATGAGVEMRQPLGVTIVGGLILSQILTLYTTPVVYLYLD 1013


>gi|110635660|ref|YP_675868.1| acriflavin resistance protein [Mesorhizobium sp. BNC1]
 gi|110286644|gb|ABG64703.1| acriflavin resistance protein [Chelativorans sp. BNC1]
          Length = 1057

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/584 (10%), Positives = 154/584 (26%), Gaps = 52/584 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    + +       G L            +  P       I           L  +  
Sbjct: 9   RNARLTLSILLFFIVAGSLA-----YINIPKEAEPDV--PIPIIY-------VSLAYQGI 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +     L    +     L+       +  Q    + + F       N  + V   +  
Sbjct: 55  SPEDSERLLLRPIETALKSLEGVKEMRSAAYQGGGFVLVEFQAGYDFSNAIEDVRAKVSD 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  +      E  I++   + +              ++  D+I      +
Sbjct: 115 AKGELPEDAEEPTVNEVNVSEFPILVVTLSGNLPERQLT----IAAKELRDRIEEVPGVL 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP +L        ++       N+         +  R +     
Sbjct: 171 EGALQGSRDELLEVIIDPVKLSSYNIQLDQLISGINASNSLVAAGALQGQEGRYAVKVPA 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+E+  +I                     ++                ++           
Sbjct: 231 LIENSEDI--------------------ANLPIVATRDAVVRARDLASVRSTFTDAETIT 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +   T++    ++                +            
Sbjct: 271 RLNGHSAIAIEVKKRVGANLVETVDAVKKISEEFVTAMPEGVSVTFSQDKSTMIRDMLDE 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   LV IV+   +       +   ++  + ++ +  LS+LG T+ +  +  ++
Sbjct: 331 LQNHVVIAIILVFIVVLYTLSGR-ASFLIGLAVPASFLMGIFALSMLGYTVNMVVLFSLI 389

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+V E       +      + ++   R    +  + +T + A   L F+ 
Sbjct: 390 LAVGMLVDDAIIVTEFAERRMNEGMPRAEAFELAAKRMAGPVIAATMTRIAAFSPLLFWP 449

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  ++   IT+ +++  SM  A+     +                         D  
Sbjct: 450 GIVGEFMKYLPITLIVTLAASMAYALIFAPTLGAMF----------AKAHVEEERKRDGW 499

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            I+ ++         +L +I  +  +      +G   +    + 
Sbjct: 500 YIRLVKQAVRFPKTVLLLTIALLVGVQWSYSKWGAGVEFFPSVE 543



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 84/240 (35%), Gaps = 11/240 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMVKKKITEIVPL 648
           DL+ VRS     +       +         R+         A  ++ E     + E V +
Sbjct: 255 DLASVRSTFTDAETITRLNGHSAIAIEVKKRVGANLVETVDAVKKISEEFVTAMPEGVSV 314

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           +  Q+   +   +  EL    ++ +I+  I +L  +  R  +   L    + ++ I    
Sbjct: 315 TFSQDKSTMIRDMLDELQNHVVIAIILVFIVVLYTLSGRASFLIGLAVPASFLMGIFA-- 372

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              ++ G   N+  + +++  +G  V+D ++V +   +  +     +   +  + +    
Sbjct: 373 --LSMLGYTVNMVVLFSLILAVGMLVDDAIIVTE-FAE--RRMNEGMPRAEAFELAAKRM 427

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G  +  +M    +  P+  W    G  +    I +   +  + + ++  A  +      
Sbjct: 428 AGPVIAATMTRIAAFSPLLFWPGIVGEFMKYLPITLIVTLAASMAYALIFAPTLGAMFAK 487



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 83/246 (33%), Gaps = 34/246 (13%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              D ++   V      G  VA+ +       +   +                +   +   
Sbjct: 785  RIDAQRTITVTANVASGYQVAEVQAQVTAALQDMNLGATRWKLAGSSEESDAAASFLTNA 844

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV----AA 725
                  +   + + +  +F  + ++  +   +  +  T+G F    I      +      
Sbjct: 845  FGA---AIFLIFVVLLAQFNRFTSVFLVLMTV--VMATIGVFLGLLITGQPFGIVMSGIG 899

Query: 726  VLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
            V+ L G  VN+ +V+   YDR+R         +S  D I ++  E     + T+ +A + 
Sbjct: 900  VIALAGVVVNNNIVLIDTYDRLRDE------GMSKYDAIIETCRERARPVLLTAFSAVLG 953

Query: 783  VLPMAV-WGGSVIG--------------SFAIPMAFGIVVAASSSIFIAA-PILLFIYDW 826
            VLP+A   G  +                S +  + +G+  A   ++ +    +++F  + 
Sbjct: 954  VLPIAFGLGLELFHHEVTIGAPSTQWWISLSSAIVYGLTFATVLTLIVTPSALMVFTREK 1013

Query: 827  RAKNAR 832
            R    +
Sbjct: 1014 RPAGQK 1019


>gi|317010830|gb|ADU84577.1| acriflavine resistance protein AcrB [Helicobacter pylori
           SouthAfrica7]
          Length = 1028

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKRIQAISPNY-EIRPFLDTTSYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESYYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKLGMDFM 540



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 75/225 (33%), Gaps = 9/225 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   + 
Sbjct: 799  NRQRSVTVLAEPNRSAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLIA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G ++     I M+ G++++   S+ I       +     K  R+
Sbjct: 976  DGSAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKLKRL 1020



 Score = 39.7 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 79/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K+I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKRI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|167044674|gb|ABZ09345.1| putative export membrane protein [uncultured marine microorganism
           HF4000_APKG7H23]
          Length = 327

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 85/309 (27%), Positives = 146/309 (47%), Gaps = 25/309 (8%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNY-----------GIDFKGGIQLGVLANRP 588
           I  +R R W   IS L  + S+  L    L +           GI+F GG  + V    P
Sbjct: 2   IDIVRYRRWFFLISALLVVPSLGALLGPMLPFVGSDLGSTLRPGIEFTGGSAMTVEFADP 61

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV-- 646
           V   VVR  L ++       Q   G   F+   + +  +   +  V+    ++  E    
Sbjct: 62  VSSLVVREQLSAIGHEGAIVQATGGNSFFIRLGELEQEELDGEGNVVNPGGRQEVEEALG 121

Query: 647 --PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-----WYFALGAITT 699
                 +Q+ + +   +  E +R  I+ V  +A+ +L YI   F+     + +   A+  
Sbjct: 122 ELSPVDVQSFDSISAVVGAETVRAAIIAVAFAAVVILFYITWAFRRVPSPFRYGTAAVVA 181

Query: 700 LILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           L+ D+   LG F++ G    +E N   +  VLT+IGYSVND +VV+DR+R+N+  Y    
Sbjct: 182 LVHDVVIVLGVFSILGRTVNMEVNAMFIIGVLTVIGYSVNDTIVVFDRVRENVLRYQ-GA 240

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
           +  ++++ SI ET+GRS  TS+   + V+ + ++GG  I    + +  G+VV   SSIF+
Sbjct: 241 TIVEMVNLSIRETVGRSFNTSITLLVVVVALLIFGGPTIQPLLLVLLVGVVVGTYSSIFV 300

Query: 816 AAPILLFIY 824
           A+ +L+   
Sbjct: 301 ASLMLVSWE 309


>gi|212635751|ref|YP_002312276.1| AcrB/AcrD/AcrF family protein [Shewanella piezotolerans WP3]
 gi|212557235|gb|ACJ29689.1| AcrB/AcrD/AcrF family protein [Shewanella piezotolerans WP3]
          Length = 1097

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/520 (13%), Positives = 142/520 (27%), Gaps = 49/520 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +    +   G++        +  +   P                          
Sbjct: 10  RPVTVWMFMFAVILFGMV-----GFSRLAVKLLPDLSYPTIT---------IRTQYVGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E    +K         R   + + L F      +  +  V   L  +
Sbjct: 56  PVEVEQLVSKPIEEAAGIVKGLRKINSISRSGMSDVVLEFEWGTDMDMASLDVREKLDTI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ---------VISHAIEQSMEIIRQRIDQ 173
             +L +D KK LL+        IV    ++             S   +       +   Q
Sbjct: 116 --ELPLDVKKPLLLRFNPNLDPIVRLALSVPSVDGDVATSASNSDLKQMRTYAEEELKRQ 173

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +           S  +  ++    +  +L QL  +   +                     
Sbjct: 174 LESLSGVAAVRLSGGLQQEVHILLNQQKLTQLNLSADLIRSRIAEE-------------- 219

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +     I G             + + +  I                 I   
Sbjct: 220 ------NINLSAGKVIQGDKEYLVRTLNQFNSLEELGQIVIYRDAQTLVRLFEVAEIVDA 273

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                D   +      +     +   +            + L   S   +L  V      
Sbjct: 274 HKERNDITRIGDRESIELAIYKEGDANTVAVARKVTEEISKLNKNSPKAEL-QVIYDQSE 332

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +       I + L ++V+++ +      L+   SI  +VI T  ++     +L 
Sbjct: 333 FIESAVNEVTSAALIGSLLSMLVIYLFLRDIIPTLIISISIPFSVIATFNMMYFADISLN 392

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + S+ GI L +GL VD+ I+V E I        +   +   G       IF S +T L  
Sbjct: 393 IMSLGGIALAVGLLVDNAIVVLENIDRCKSLGMNKLDAAVTGTKEVSGAIFASTLTTLAV 452

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
            V L F     G      A+T+  ++L S+F A++ +  +
Sbjct: 453 FVPLVFVDGVAGALFSDQALTVTFALLASLFVALTTIPML 492



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 88/251 (35%), Gaps = 4/251 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I +   A   V L  V   +++ +  +   +  D E   L   +    ++VA  R + 
Sbjct: 250 GQIVIYRDAQTLVRLFEVAEIVDAHKERNDITRIGDRESIELAIYKEGDANTVAVARKVT 309

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               K+ +  P + +Q        I   +       +I S ++ML+           L  
Sbjct: 310 EEISKLNKNSPKAELQVIYDQSEFIESAVNEVTSAALIGSLLSMLVIYLFLRDIIPTLII 369

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++   +  T        I  N+ ++  +   +G  V++ +VV + +    +  +  ++
Sbjct: 370 SISIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAIVVLENI---DRCKSLGMN 426

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             D       E  G    +++      +P+    G     F+   A  +  A  +S+F+A
Sbjct: 427 KLDAAVTGTKEVSGAIFASTLTTLAVFVPLVFVDGVAGALFS-DQALTVTFALLASLFVA 485

Query: 817 APILLFIYDWR 827
              +  +    
Sbjct: 486 LTTIPMLASRE 496



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 68/193 (35%), Gaps = 7/193 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +             +   +  +      ++IQ       +      +   + +++
Sbjct: 864  QQRVAIVSANLAYGDLNDAVLTARDILANQTLPTSIQARFGGQNEEMEHSFQSLQIALVL 923

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    +     ++     ++ L G  V
Sbjct: 924  AVFLVYLVMASQFESLLHPLLILIAVPMAVGGSILGLYITQTHLSVVVFIGLIMLAGIVV 983

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+    +L  +       I  +    L   + T+M   + + PMA+    G 
Sbjct: 984  NNAIVLVDRIN---QLRQSGQDKLTAITNAAESRLRPIIMTTMTTALGLSPMALGLGDGS 1040

Query: 792  SVIGSFAIPMAFG 804
             V    AI + FG
Sbjct: 1041 EVRAPMAITVIFG 1053


>gi|158424049|ref|YP_001525341.1| RND efflux transporter [Azorhizobium caulinodans ORS 571]
 gi|158330938|dbj|BAF88423.1| RND efflux transporter [Azorhizobium caulinodans ORS 571]
          Length = 1045

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/526 (12%), Positives = 153/526 (29%), Gaps = 33/526 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
            P   +   P                     L     + +   +    +   + +     
Sbjct: 29  YPLLPVAPLPQVDFPTIQ---------VSASLPGASPETMASSVATPLERQFAQIAGVTQ 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S       IT+ F  +R  +  A  V   +   + +L  +              S +
Sbjct: 80  MTSSSALGVASITIQFDLNRNIDAAAQDVQAAITAASGQLPDNLPSPPTFRKVNPADSPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L   ++   +    +           QI       Q   +      +  + DPS+L  L 
Sbjct: 140 LI-LSVQSDLYPITKVDDIADTILAQQISQIPGIAQVAITGEQKPAVRVQVDPSKLAALG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +          +    F       +                      A+      
Sbjct: 199 MSLEDVRTVLANATVDQPKGSFDGPSQSFTI--------------------YADDQLLAS 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           +P  D+                                     Q I   +   +    ++
Sbjct: 239 QPWNDVVIAYKSGAPVRIRDIGRAVDGPENARLASWQNGRRGIQLIVFKQPGANVIDAVD 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
               +   L A   P     +          S    + T  +  GLV+ V+F  +     
Sbjct: 299 RVRAMIPRLEASLPPGIDVRIITDRTQTIRASVDDVQFTMMLTIGLVVAVIFAFLRSVWA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            ++   ++ L +I T A++ LLG +L   S+ G+ + +G  VD  I++ E I     +  
Sbjct: 359 TIIPSITVPLALIGTFAVMYLLGYSLDNLSLMGLTIAVGFVVDDAIVMLENIYRHIEEGM 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           + F +   G +    TI   +++ +   + +   G   G  +R FA+T+ ++IL+S+  +
Sbjct: 419 APFEAAIKGAAEIGFTIISISVSLIAVFIPILLMGGIVGRLLREFAMTVTITILVSVVVS 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +++   M    ++ +         ++        +A+     ++  
Sbjct: 479 LTLTPMMCSRFLKNEHGVKHGRAYMAAEAFFDGMLALYDRGLKWVL 524



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/226 (14%), Positives = 79/226 (34%), Gaps = 6/226 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+          S+QN       +V  Q       A  RV  M+ +    + P   ++  
Sbjct: 261 RAVDGPENARLASWQNGRRGIQLIVFKQPGANVIDAVDRVRAMIPRLEASLPPGIDVRII 320

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +       ++   + + +        +  +    T+ L +  T     L 
Sbjct: 321 TDRTQTIRASVDDVQFTMMLTIGLVVAVIFAFLRSVWATIIPSITVPLALIGTFAVMYLL 380

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   +  ++  +   +G+ V+D +V+ + +    +     ++  +   K   E     + 
Sbjct: 381 GYSLDNLSLMGLTIAVGFVVDDAIVMLENI---YRHIEEGMAPFEAAIKGAAEIGFTIIS 437

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
            S++     +P+ + GG V   +  FA+ +   I+V+   S+ +  
Sbjct: 438 ISVSLIAVFIPILLMGGIVGRLLREFAMTVTITILVSVVVSLTLTP 483



 Score = 37.7 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 92/257 (35%), Gaps = 6/257 (2%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + V +    D+  + + ++               +   V L +      A    +  +++
Sbjct: 771  IYVKSPITGDMIPLSTFVKVDTSKTSYLSISHQGQFPAVTLSFNLAPGAALGDAVTAIQQ 830

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
               E+    T+        +  ++ +R     +  + IA+ I + + ++ +   L  ++T
Sbjct: 831  AEREMGKPVTLITNFQGTAQAFQDSLRTQPYLIAAAVIAVYIILGVLYESFIHPLTILST 890

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    L G + ++  +  +L LIG    + +++ D      K     ++   
Sbjct: 891  LPSAGLGALLTLYLTGQDLSVIGLIGILLLIGIVKKNAIMMID--FALQKEREEGMAPER 948

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T+MAA +  +P+ +    G  +       +  G+ V+   +++  
Sbjct: 949  SIYEACLTRFRPIMMTTMAALLGGVPLMLGTGTGSELRQPLGYAIVGGLAVSQILTLYTT 1008

Query: 817  APILLFIYDWRAKNARI 833
              + L +        R+
Sbjct: 1009 PVVYLAMGRVSRAIDRL 1025


>gi|254720086|ref|ZP_05181897.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella sp. 83/13]
 gi|265985090|ref|ZP_06097825.1| RND family transporter [Brucella sp. 83/13]
 gi|306837323|ref|ZP_07470205.1| multidrug efflux transporter protein, AcrB/AcrD/AcrF family protein
           [Brucella sp. NF 2653]
 gi|264663682|gb|EEZ33943.1| RND family transporter [Brucella sp. 83/13]
 gi|306407600|gb|EFM63797.1| multidrug efflux transporter protein, AcrB/AcrD/AcrF family protein
           [Brucella sp. NF 2653]
          Length = 1026

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 71/605 (11%), Positives = 158/605 (26%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YVQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGDTIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V  G 
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQGS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSLWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 89/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q    +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQGSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 92/259 (35%), Gaps = 10/259 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  ++  ++   +         +   V L Y     V+     + ++   
Sbjct: 765  LRVPTMSGVLVPLASFATITRTNGPVTVNQTGQLASVTLSYNLPAGVSLGTATDRLESLR 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             EI    ++        +I  +      + +  +   + I + + ++ +   L  ++ L 
Sbjct: 825  NEIDMPVSVAMRPAGAAQIFAQSTGNMGLLIFAAIATIYIVLGVLYESFAHPLTILSGLP 884

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                  L    LFG +F++ A+  +L LIG    + +++ D           +    + I
Sbjct: 885  SAAFGALATLQLFGFDFSIIALIGLLMLIGIVKKNAIMMVDVAL--TLKRDENRKPDEAI 942

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+  A ++ +P+A+    G  +     + +  G++++ + ++FI   
Sbjct: 943  HLAAVRRFRPIMMTTFCALLAAVPVALGHGQGSELRQPLGVAVVGGLILSQALTLFITPV 1002

Query: 819  ILLFIYD----WRAKNARI 833
            I + I            ++
Sbjct: 1003 IFVEIDRLANHRWFSRKKV 1021


>gi|256825356|ref|YP_003149316.1| protein-export membrane protein SecD [Kytococcus sedentarius DSM
           20547]
 gi|256688749|gb|ACV06551.1| protein-export membrane protein SecD [Kytococcus sedentarius DSM
           20547]
          Length = 640

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 113/582 (19%), Positives = 210/582 (36%), Gaps = 76/582 (13%)

Query: 46  LGLDLRGGSHLVLEVDED--DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSF 102
           LGLDL GG  L+LE   +  +   G +    + +R  +   G+    +     + I+++ 
Sbjct: 45  LGLDLEGGQQLILEPAIEGGEVSGGQVDQAVNIIRQRVDGSGVAEAEVTTLGGSNISVAM 104

Query: 103 ADSRFK---ENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
             +      E++     +  + V +        + + T    E S   S        +  
Sbjct: 105 PGTPDPAVLESLQASSRMTFREVLAVEGSATGPDTVDTLPGYEPSEEPSGEATPAGDATP 164

Query: 160 ---IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ------------------- 197
                 S +   +       +E       +                              
Sbjct: 165 SGDATPSGDASAEPSSSPTTAEGVWPAQATPSGEPTSSPSPSGSASPSGASNSPEPSGSG 224

Query: 198 ------------------------DPSRLRQLLGTTAKMSFH--------KVLPNNSKKG 225
                                   DP    Q +    ++           +   + ++K 
Sbjct: 225 SGESPAPSPSGSGDGGDTGNQGSSDPDARGQDIVIPPEVQSRFEEMDCSDEKAQDAAQKA 284

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA-----TANFDPKTHKPVVDISFDEMGAR 280
                    D DG    +     I G  +  A     T      T +  V++  D+ GA 
Sbjct: 285 GDDEFVVACDPDGQVKYLLGPTRIQGSSIADASSGPATNAQGQPTGEIAVNLELDDAGAD 344

Query: 281 RFFEVTR-------DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
            F +++         +     A++LDG V++AP + Q I +G+A I+GNFT E    LA 
Sbjct: 345 IFADLSAMMAAQPEGSPYNQFAMLLDGDVISAPGMRQTITNGEASITGNFTAEEGKALAD 404

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
            L+ G+LP   N+     +   LG + +  G  A V GLVL+ ++ ++ Y   GLV   S
Sbjct: 405 QLKFGALPFSFNLQSSEQISPTLGEEQLRWGIWAGVIGLVLVAIYSLLQYRALGLVTLAS 464

Query: 394 IFLNVILTLALLSLLGATLT----LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           + L  +L    + LLG        +  I G+++ IG+  DS I+  ERIR+E R+ + + 
Sbjct: 465 LALAALLAYGAVVLLGWQYNLRLTMAGITGLIVAIGITADSFIVYFERIRDEVREGRPLR 524

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++D  + RA  TI  S+   L+A V+L+      V+ FA  +GL+ +I +   +     
Sbjct: 525 NAVDTAWVRARRTILISDAVNLLAAVILYLLSEANVKAFAFMLGLTTIIDLIVVMLFTHP 584

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
           ++  + + +   +           +    +    R R   + 
Sbjct: 585 VVTLLAQTRFFGNGHPLSGMNPESLGARKSTYVGRGRVRSLP 626



 Score = 97.1 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 85/217 (39%), Gaps = 8/217 (3%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +          G+  A+       + K   +     +Q++E + P +  E +R GI   +
Sbjct: 381 QTITNGEASITGNFTAEEGKALADQLKFGALPFSFNLQSSEQISPTLGEEQLRWGIWAGV 440

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL----TAVAAVLTLI 730
           I  + + IY  ++++    L  + +L L      G   L G ++NL      +  ++  I
Sbjct: 441 IGLVLVAIYSLLQYR-ALGLVTLASLALAALLAYGAVVLLGWQYNLRLTMAGITGLIVAI 499

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G + +  +V ++R+R  ++        R+ +D +        + +     ++ + + +  
Sbjct: 500 GITADSFIVYFERIRDEVRE---GRPLRNAVDTAWVRARRTILISDAVNLLAAVILYLLS 556

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + + +FA  +    ++     +    P++  +   R
Sbjct: 557 EANVKAFAFMLGLTTIIDLIVVMLFTHPVVTLLAQTR 593


>gi|317179028|dbj|BAJ56816.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori F30]
          Length = 1026

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/568 (11%), Positives = 157/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +    +     +   +       +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKKTIKPMLQKIDGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILVNANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++V+ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AVLAVLVVFAFLRNGTITLVSAISIPISVMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMISSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKLGMEFM 540



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ +  + + + + +   ++        + T+ L  +       L     ++ ++  ++ 
Sbjct: 854  LIALATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLIL 913

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+
Sbjct: 914  LIGMVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLAL 970

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 971  ASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1017



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 77/240 (32%), Gaps = 6/240 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAVLAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SVMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    + I   I
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALSYVVVVTIIPMI 476


>gi|258404962|ref|YP_003197704.1| acriflavin resistance protein [Desulfohalobium retbaense DSM 5692]
 gi|257797189|gb|ACV68126.1| acriflavin resistance protein [Desulfohalobium retbaense DSM 5692]
          Length = 1042

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/509 (11%), Positives = 143/509 (28%), Gaps = 23/509 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              V        V   +    ++    +        S +  +++ITL F      +    
Sbjct: 47  VTTVWPGATPYEVEREIVEEQEDALKGVSNLVEMESSCQNNRSQITLRFKVGTDVDTALL 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V+  L  V        +K ++  +      +V       +     I++        + Q
Sbjct: 107 RVSNKLDEV-PSYPDGVEKPIINASGASTSPVVWMLLKTKETSPRPIQEYRTFFENEVRQ 165

Query: 174 -IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
            +         L       ++    DP +L        ++       N +      G+  
Sbjct: 166 YLERVPGVADLLVFGGTEKEMQVTLDPEKLAAHALRVQEVIAVLQGDNTNVSAGTTGIGR 225

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                      +   +I+   ++    N         V   + +  A             
Sbjct: 226 RDYRLRTIGEFKTPADITQTVIHARGDNVVRVGDVAEVHFGYADNDAAMM---------- 275

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                         ++    P     +        A +        +             
Sbjct: 276 --------HNGQNGIVCGIKPEPGVNVLDMTNRAEAVVNDLNQGLLADQDVFLDWVYDQR 327

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
               G+  + K    +   L ++ L + +      ++   +I +++I T   ++  G  L
Sbjct: 328 PYINGAIDLVKRNILLGGLLAVLTLLIFLRSVSSTIIVAAAIPISIIGTFVFMNGFGRNL 387

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            + S+AGI   +G+ VDS I+V E I       +S F S   G    +  +  S +T + 
Sbjct: 388 NVISLAGIAFAVGMLVDSAIVVLENIDRHRSMGKSPFESAYHGAREVWGAVLASTLTTVA 447

Query: 473 ATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             + + F     G   +  AI +  +I +S+F ++ ++  +      + + +        
Sbjct: 448 VFLPVVFIEQEAGQLFKDIAIAVTCAIALSLFVSVLVIPMLAKHFFTWSRRRHDTKKQGL 507

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSI 558
                   +       R      +     
Sbjct: 508 LGTFGSYFVRAMMGLVRLATANWASRLIT 536



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 87/282 (30%), Gaps = 13/282 (4%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK- 615
                  L T G            +    +  V +  V          D +  +      
Sbjct: 223 IGRRDYRLRTIGEFKTPADITQTVIHARGDNVVRVGDVAEVHFGYADNDAAMMHNGQNGI 282

Query: 616 ----NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                    +      + A+  V ++ +  + +          +      + +L+++ I 
Sbjct: 283 VCGIKPEPGVNVLDMTNRAEAVVNDLNQGLLADQDVFLDWVYDQRPYINGAIDLVKRNI- 341

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +A+L  +         +     + + I  T  F   FG   N+ ++A +   +G
Sbjct: 342 -LLGGLLAVLTLLIFLRSVSSTIIVAAAIPISIIGTFVFMNGFGRNLNVISLAGIAFAVG 400

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             V+  +VV + +    +  +   S  +       E  G  + +++      LP+     
Sbjct: 401 MLVDSAIVVLENI---DRHRSMGKSPFESAYHGAREVWGAVLASTLTTVAVFLPVVFIEQ 457

Query: 790 -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G +    AI +   I ++   S+ +   +    + W  + 
Sbjct: 458 EAGQLFKDIAIAVTCAIALSLFVSVLVIPMLAKHFFTWSRRR 499



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 79/225 (35%), Gaps = 17/225 (7%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E      L  Q G     ++ +  +++          +        +    L    I+ +
Sbjct: 813  EVTPPETLALQAGMETISSKAVPQLRQAGLLDGISVDMSGAADKLEQTWDVLKGNFILAI 872

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL-------FGIEFNLTAVAAV 726
            II+ + M     +   + + L  +    + +    GF  L            ++  +   
Sbjct: 873  IITYLLMS---ALFGNFLYPL--VIMFTVPLAAAGGFLGLKLVDWFLVPQPLDVLTMLGF 927

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG  VN+ +++  +   N++L  + +     + +S+   +     ++  +   +LP+
Sbjct: 928  IILIGIVVNNAILIVHQSLNNIRL--SGMGHLKAVRESVRTRIRPIYMSACTSIFGMLPL 985

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +    G  +       +  G+ ++   ++F+   +LLF      
Sbjct: 986  VIAPGPGSELYRGLGSVVLGGLALSTILTVFVTPSLLLFFIRMEK 1030


>gi|223940326|ref|ZP_03632182.1| acriflavin resistance protein [bacterium Ellin514]
 gi|223890989|gb|EEF57494.1| acriflavin resistance protein [bacterium Ellin514]
          Length = 1038

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 61/552 (11%), Positives = 150/552 (27%), Gaps = 42/552 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                 ++ + I  +G++        Q  +   P                   ++     
Sbjct: 10  RPVATSLIMAAILLVGVVA-----YKQLPVSTLPEVNYPT-----------IQVLTFYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D +   +    +     +        +     + I L F      +    +V   + 
Sbjct: 54  ASPDVMASAVTAPLERQFGQVPGLNQMTSTSSGGSSVIVLQFELYLNIDVAEQEVQAAIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L +D     + + +    + +L+   +        +       +   +I      
Sbjct: 114 AAQTFLPIDLPSPPIYSKSNPADAPILT-LALTSKSIPLSKVQDLADTRLAQKISQLPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      +  + +P+ L         M       + ++    F         G  
Sbjct: 173 GLVSIAGGQKPAIRIQANPTALAAYGINLEDMRTVLQQTSINQAKGNFDGPHRSYQIGAN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    E                       +                     +  +   
Sbjct: 233 DQLLTSEE--------------------YHSVVVAYTNGAPVMLKDVALAVDGVENIKQA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +   +    ++        L +         V          S  
Sbjct: 273 AWMNDFPAVIVNIQRQPGANIIQVVDRIKARLPQLTSTLPASIQTSVLTDRTSTIRASVR 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   LV++V+F+ +      ++   ++ L+++ T   + LLG +L   ++  +
Sbjct: 333 DIQFELTLTVVLVVLVIFLFLRTVSATIIPSVAVPLSLVGTFGAMYLLGYSLNNLTLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I++ E I     +  +   +   G  +   TI    I+ +   V L F 
Sbjct: 393 TISTGFVVDDAIVMIENIARYIEQGDAPLQAALKGSEQIGFTIMSLTISLIAVLVPLLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G   R FA+T+ ++ILIS   ++++   M   ++R K          +    +   
Sbjct: 453 GDIVGRLFREFAVTLSVTILISAVVSLTLTPMMCSRLLRAKAEGQGGRFSKASERTLERV 512

Query: 538 IAIQFMRARFWG 549
           IA      R+  
Sbjct: 513 IAFYGWTLRWVL 524



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +     + L +  T G   L G   N   + A+    G+ V+D +V+ + +    +
Sbjct: 356 VSATIIPSVAVPLSLVGTFGAMYLLGYSLNNLTLMALTISTGFVVDDAIVMIENI---AR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGI 805
                 +      K   + +G ++ +   + I+VL   ++ G ++      FA+ ++  I
Sbjct: 413 YIEQGDAPLQAALKGSEQ-IGFTIMSLTISLIAVLVPLLFMGDIVGRLFREFAVTLSVTI 471

Query: 806 VVAASSSIFIAA 817
           +++A  S+ +  
Sbjct: 472 LISAVVSLTLTP 483


>gi|167625838|ref|YP_001676132.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
 gi|167355860|gb|ABZ78473.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
          Length = 1026

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/533 (12%), Positives = 163/533 (30%), Gaps = 39/533 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R       +  +I  +G   AL +   +   +   + +  +    G D            
Sbjct: 9   RRPVLAASISFLILLLG-FYALKSMQVREYPEMTNTVVTVSTSYYGAD------------ 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    ++  +                +KI++    +         +   +  
Sbjct: 56  -SNLIQGFITQPLEQALAQADNVDFMTSDSFLGSSKISVYMKLNTDPNGALADILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + + + +  +T  + S +      DQ+ S   + +  + R    ++   +   
Sbjct: 115 VRSQLPKEAEDSTVEMSTGAQTSALYISFYSDQINSS--QITDYLERVVKPELFTIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I   +    DP+R+     ++  +       N           F   +     
Sbjct: 173 KVNLYGGIKYAMRIWLDPARMGGFNLSSTDVMSVLQANNYQSAVGQTNNTFTLLNGTADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+                      +                ++    +  +   
Sbjct: 233 QVATVAELE--------------------KLVIGSKDGLVIRLGDIADVSLEKSHDVYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +       A  +   +           +   +  A   S + 
Sbjct: 273 LADGQEAVVVGLDVTPTANPLVVAADARAMMPQITRNLPISMKARILYDSSLAIDESINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    + +V++V+ + +   +  ++   +I L++I    ++ + G TL L ++  +V
Sbjct: 333 VIKTIGEASLIVIVVITLFLGSFRAVIIPIVTIPLSLIGVAVIMQMFGFTLNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  ++ F +  +G       +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVDRHIKLGETPFRAAIIGTREIAVPVISMTITLAAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
              G   + FA+T+  ++ IS   A+++   M   I++     +     +  F
Sbjct: 453 GITGSLFKEFALTLAGAVFISGIVALTLSPMMCSKILKAHSKPNRFERGVENF 505



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 62/161 (38%), Gaps = 6/161 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            S I +++       +   +  I T+ L +        +FG   NL  + A++  IG  V
Sbjct: 340 ASLIVIVVITLFLGSFRAVIIPIVTIPLSLIGVAVIMQMFGFTLNLMTLLAMVLAIGLVV 399

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +    +      +          E     +  ++       P+A+ G   G
Sbjct: 400 DDAIVVVENV---DRHIKLGETPFRAAIIGTREIAVPVISMTITLAAVYAPIALMGGITG 456

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           S+   FA+ +A  + ++   ++ ++  +   I    +K  R
Sbjct: 457 SLFKEFALTLAGAVFISGIVALTLSPMMCSKILKAHSKPNR 497



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDI---TK 706
             + + +G           +     ++   + + +  +F+     L  + ++ L I     
Sbjct: 830  YSYDFLGEARQYVTEGSALYATFGLALAIIFLVLASQFESLRDPLVILVSVPLAISGALI 889

Query: 707  TLGFFALFGIE-FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LG+  +FG+   N+     ++TL+G      +++ +  ++        +S  D I  + 
Sbjct: 890  ALGWTHVFGLSSMNIYTQVGLITLVGLITKHGILMCEVAKEE--QLHNGLSKLDAIKHAA 947

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLF 822
               L   + T+ A    ++P+    G   +  F I +    G+ +    ++F+   I  +
Sbjct: 948  TIRLRPILMTTAAMIAGLIPLLFAVGAGAVARFNIGLVIVSGLAIGTVFTLFVLPVIYTY 1007

Query: 823  IYDWRAK 829
            + +    
Sbjct: 1008 LAEKHEP 1014


>gi|317177560|dbj|BAJ55349.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori F16]
          Length = 1026

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/568 (11%), Positives = 157/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +    +     +   +       +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKKTIKPMLQKIDGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFNTLKAENVEIDGGRIVNSQRELSILVNANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++V+ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISVMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNERKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKLGMEFM 540



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ +  + + + + +   ++        + T+ L  +       L     ++ ++  ++ 
Sbjct: 854  LIALATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLIL 913

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+
Sbjct: 914  LIGMVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLAL 970

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 971  ASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1017



 Score = 39.3 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SVMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNERKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|206602177|gb|EDZ38659.1| Putative acriflavin resistance protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 1027

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/547 (13%), Positives = 162/547 (29%), Gaps = 43/547 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           ++   ++ +L   +   G +        +   D FPS                  + L+ 
Sbjct: 8   LKRPVFVGMLLLALVISGAVS-----YLRLGEDLFPSVSFPI-----------LSVTLQE 51

Query: 60  -VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +   + +  +   S L                +TL F +S     +  +V   
Sbjct: 52  PGTSARVIEQKVTVPLENALSTLPGIQHIHSVSVPGATSVTLIFPESVRTGRMLARVEEK 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +Q     L  D    ++   T  E+ ++          S ++     +    +  +    
Sbjct: 112 VQQTRPFLPKDVTHPVISRVTPTEMPLLWILF--PLERSKSLSDRQWLRTHLVSPLRALG 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         L     P  L +  GT  ++                          
Sbjct: 170 GVASVDSLWPPETVLHVWIRPGDLGRYKGTIDQVIASIKA-------------------- 209

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              LV     + G          D  T   + ++     G R+       ++ +     +
Sbjct: 210 ASLLVPTGQVVQGKQELLVETREDRLTKSSLENLPVLLGGGRQIPLTRIASVEESPEQPV 269

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L   +        K   +G    +    L   L+  S      ++     G    +
Sbjct: 270 SILRLDGKLAVGLKVYKKHDANGIQVSKKVRHLLESLKFPSSFGGRPMIRMDLSGFVAKN 329

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           D     T  I   L ++V+F+ +      ++A  +I  +VI T A++ L   TL   ++ 
Sbjct: 330 DRELFETLFIGGFLTVVVIFLFLGSWSSTIIASLAIPASVISTFAIMRLAHFTLNTLTML 389

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+ L +G+ VD  I+V E I       Q  F +   G       +  +    +   V + 
Sbjct: 390 GLSLVVGILVDDAIVVLENISRHREMGQEPFVAAADGVGEIGLAVLATTFCIVAVFVPVA 449

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F     G     F +T+  ++L+SM  ++++   +   +++  +  S +        +I 
Sbjct: 450 FMKGVFGKFFHEFGLTVSFAVLMSMLVSLTLTPVLAARMVKGNRGTSRNGKKNGNPSVIE 509

Query: 536 DCIAIQF 542
                  
Sbjct: 510 KMRGRYR 516



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 68/202 (33%), Gaps = 9/202 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           +LE +K   +         +      K  REL     +G  ++ + + +++     W   
Sbjct: 302 LLESLKFPSSFGGRPMIRMDLSGFVAKNDRELFETLFIGGFLTVVVIFLFLG---SWSST 358

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           + A   +   +  T     L     N   +  +  ++G  V+D +VV + +    +    
Sbjct: 359 IIASLAIPASVISTFAIMRLAHFTLNTLTMLGLSLVVGILVDDAIVVLENI---SRHREM 415

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAAS 810
                      + E     + T+       +P+A   G        F + ++F ++++  
Sbjct: 416 GQEPFVAAADGVGEIGLAVLATTFCIVAVFVPVAFMKGVFGKFFHEFGLTVSFAVLMSML 475

Query: 811 SSIFIAAPILLFIYDWRAKNAR 832
            S+ +   +   +       +R
Sbjct: 476 VSLTLTPVLAARMVKGNRGTSR 497



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 85/217 (39%), Gaps = 8/217 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           N+  L       +    ++   V +           +V+E +K  I  + P         
Sbjct: 781 NVAELDYRSEGERRIRDDRMPSVEINANLSGEKTLGKVIEEIKTIIRPLFPQGYSYRFGG 840

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
            G  + + + +   + ++ S +A+ + +  +F+ +   L  + ++ + +   +    L G
Sbjct: 841 SGDVLQQAVGQFA-MAILFSILAVYMVLAAQFENFLTPLVIMISIPVSLVGAILALRLTG 899

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             FNL +   V+ L G    + +++ D       L     S R  + ++    L   + T
Sbjct: 900 TSFNLMSAMGVIILFGLVAKNAILLVD---YTNTLRRQGKSCRVALMEACPIRLRPVLMT 956

Query: 776 SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
           ++A    +LPM+     GG++    A+ +  G++ + 
Sbjct: 957 TVAMIAGMLPMSFGWGAGGALRVPMALVVIGGLLSSM 993


>gi|53716940|ref|YP_105711.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           ATCC 23344]
 gi|67639248|ref|ZP_00438128.1| RND efflux transporter [Burkholderia mallei GB8 horse 4]
 gi|121596880|ref|YP_989649.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           SAVP1]
 gi|124381884|ref|YP_001024206.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           NCTC 10229]
 gi|126447020|ref|YP_001078388.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           NCTC 10247]
 gi|167003008|ref|ZP_02268798.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           PRL-20]
 gi|254174524|ref|ZP_04881186.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           ATCC 10399]
 gi|254200518|ref|ZP_04906883.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           FMH]
 gi|254204542|ref|ZP_04910895.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           JHU]
 gi|254356828|ref|ZP_04973103.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           2002721280]
 gi|52422910|gb|AAU46480.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           ATCC 23344]
 gi|121224678|gb|ABM48209.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           SAVP1]
 gi|124289904|gb|ABM99173.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           NCTC 10229]
 gi|126239874|gb|ABO02986.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           NCTC 10247]
 gi|147748130|gb|EDK55205.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           FMH]
 gi|147754128|gb|EDK61192.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           JHU]
 gi|148025855|gb|EDK83978.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           2002721280]
 gi|160695570|gb|EDP85540.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           ATCC 10399]
 gi|238519784|gb|EEP83251.1| RND efflux transporter [Burkholderia mallei GB8 horse 4]
 gi|243061362|gb|EES43548.1| hydrophobe/amphiphile efflux family protein [Burkholderia mallei
           PRL-20]
          Length = 1033

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/608 (11%), Positives = 181/608 (29%), Gaps = 42/608 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL   +        + ++P A+    IS+  D  G S  +++  
Sbjct: 22  RRPVLSLVFSLLILLVGLRALM-----SLPVRQYP-ALESATISVATDYPGASQELMQ-- 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 GF+     +  +          +  Q ++ +      +   +    +V   +Q 
Sbjct: 74  ------GFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRAMTEVMAKVQQ 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     + +  ++R     +       
Sbjct: 128 VKYKLPADAYDSVITKLTDAPTAVMYLGFASDAL--SIAQITDYVVRVAQPLVTTVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D +RL     +   ++      N                     
Sbjct: 186 SAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGSLTIADISANT 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D    +                   + +     G           +           
Sbjct: 246 DLTDVGAFN------------------EMVVKSAPNGGGLVRLKDVATVEIGGENYNSSA 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +   G +   +                      S + 
Sbjct: 288 LMNGRRAVYIAVNATPAGNPLEIVRGVGAVLPAIERNKPASVQIANMFDGARFVNASIAE 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L+++ + AL+   G +L L ++  +V
Sbjct: 348 VRSTLTEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMV 407

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL---F 478
           L IGL VD  I+V E I     + +    +  +G     S +     T +     +    
Sbjct: 408 LAIGLVVDDAIVVVENIHRHIEQGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMG 467

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++L+S   A+++   +   ++  +       K+I+         
Sbjct: 468 GLTGLLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSRMSEGRVAKAIERTLERVTHA 527

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + + +   +            + +G I + V A +  +L  
Sbjct: 528 YRRGLHASLAARPAILLIGAGVLAGIVLLFSGVKRELAPQEDQGSIMVAVKAPQYANLDY 587

Query: 594 VRSNLESL 601
           +      +
Sbjct: 588 MERYAPDI 595



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 68/204 (33%), Gaps = 9/204 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            VL  +++     V ++ + +          E+       + I  + + +++     +  
Sbjct: 316 AVLPAIERNKPASVQIANMFDGARFVNASIAEVRSTLTEAIAIVVVVIFLFLG---SFRA 372

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 373 VIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIE 429

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVIGSFAIPMAFGIVVAA 809
                         E     +           P+       G +   FA  +A  ++V+ 
Sbjct: 430 QGEPPVRAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGLLFKEFAFTLAGAVLVSG 489

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             ++ ++  +   +   R    R+
Sbjct: 490 IVALTLSPMLGSLLLTSRMSEGRV 513



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 9/156 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L I   L    L     N+     ++TLIG 
Sbjct: 865  GFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N       +  R  I+++    L   + T+ A    ++P+    G 
Sbjct: 925  ISKHGILMVS--FANDLQRHEGLDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 982

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V     +F+   +  F+  
Sbjct: 983  GAASRFAIGITVSTGMLVGT---LFVLPTVYTFVAK 1015


>gi|16331901|ref|NP_442629.1| cation or drug efflux system protein [Synechocystis sp. PCC 6803]
 gi|1001819|dbj|BAA10700.1| cation or drug efflux system protein [Synechocystis sp. PCC 6803]
          Length = 1054

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/564 (11%), Positives = 164/564 (29%), Gaps = 45/564 (7%)

Query: 5   PWLVILYSM-ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            W +++ ++ I   G++        Q  LD FP   P          +   H        
Sbjct: 17  RWFIVIAAIGITLWGIISV-----GQMPLDVFPEFAPP---------QVDIHTEAPGLAP 62

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   + +  +   + L        S +   + +++ F            VT  LQ V 
Sbjct: 63  EEVETQITVPIESAVNGLPGVTTVRSSSKVGLSMVSVVFDQDADVYKARQTVTERLQQVT 122

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-VISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++L        +        +IV     I     S+ ++    +     +Q+       Q
Sbjct: 123 NQLPEGSHPPEISPLVSPLGTIVQYAFTIKDGGSSNLMDLRRLLETTVGNQLLSVPGVSQ 182

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q     DP++LR L  +  +++      N++  G                 
Sbjct: 183 VTLYGGDERQEQVLVDPAKLRALKVSLNEVTQASAEANSNAPGGFL-------------- 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                 I G            ++ + +       +  +         +    A+      
Sbjct: 229 ------IGGGQELLVRGLGQMQSIEDLRRSVVKVVDGKPILLEDVAEVKTGSALKRGDGS 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    + + +  +      +    +   L+             R       +    
Sbjct: 283 FNGQPAIVMMVNKQPDVDTPTVTKAVEAVVESLKPTFPADVQIAQTFRQANFIDSAIRNV 342

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +      +V +++ + ++  +   +   +I L++++ L  +   G  +   ++ G+V+
Sbjct: 343 STSLLEGIVIVSVIMLIFLMNWRTAAITLTAIPLSLLIGLMFMKAWGLGINTMTLGGLVV 402

Query: 423 GIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IG  VD +I+  E      R NQ           +          +  S +  ++    
Sbjct: 403 AIGSVVDDSIVDMENCYRGLRTNQAEGNPKHPLRVVYETSVEVRLAVIFSTVIIVVVFAP 462

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G       +   L I  S   A+++  A+   ++  +++             
Sbjct: 463 IFSLTGVEGRIFAPMGLAYLLCIGASTLVAMTVSPALCGILLANQRLPQEGTFVSRWAER 522

Query: 534 IPDCIAIQFMRARFWGVGISILFS 557
           +   +    +RA    + I+++  
Sbjct: 523 LYRPLLNFSLRAPQVILSIALIAV 546



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 82/259 (31%), Gaps = 9/259 (3%)

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
               I+      + V+  +P+ L  V        +              ++  +    D+
Sbjct: 242 QMQSIEDLRRSVVKVVDGKPILLEDVAEVKTGSALKRGDGSFNGQPAIVMMVNKQPDVDT 301

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
              T+ +E V + +    P                  IR     ++   + + + + I  
Sbjct: 302 PTVTKAVEAVVESLKPTFPADVQIAQTFRQANFIDSAIRNVSTSLLEGIVIVSVIMLIFL 361

Query: 689 -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR---- 743
             W  A   +T + L +   L F   +G+  N   +  ++  IG  V+D +V  +     
Sbjct: 362 MNWRTAAITLTAIPLSLLIGLMFMKAWGLGINTMTLGGLVVAIGSVVDDSIVDMENCYRG 421

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IP 800
           +R N          R + + S+   L     T +   +   P+    G     FA   + 
Sbjct: 422 LRTNQAEGNPKHPLRVVYETSVEVRLAVIFST-VIIVVVFAPIFSLTGVEGRIFAPMGLA 480

Query: 801 MAFGIVVAASSSIFIAAPI 819
               I  +   ++ ++  +
Sbjct: 481 YLLCIGASTLVAMTVSPAL 499



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 94/258 (36%), Gaps = 17/258 (6%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
             G I +     + + L  V      +    ++ ++          +  +   SV +    
Sbjct: 779  MGAIPISTPTGQMITLGDVAKIDYGMGANVVNREDVSRLIVVSANVAERDLGSVVEDVQA 838

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            ++ +K                   + +  L       ++ S +A L+   + F    +L 
Sbjct: 839  QIKEKVQLPQGYFIEYGGQFESEQRATNSL-------LLFSFVAALVIGILMFFSVKSLP 891

Query: 696  AITTLILDI--TKTLGFFA--LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            A   +++++      G  +    G   ++ ++   +TL G +V + +++ D      + +
Sbjct: 892  ATIAIMINLPLALIGGLLSVVFTGGVISIASLVGFITLFGVAVRNGLLLVDNYN---QKF 948

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +  ++ I K   E +   + T++ + + +LP+A     G  ++   AI +  G+  +
Sbjct: 949  AQGMKLKETIFKGSMERVNAILMTALTSALGMLPLATASSAGNEILQPLAIVVLGGLCTS 1008

Query: 809  ASSSIFIAAPILLFIYDW 826
             + ++ +   +      W
Sbjct: 1009 TALTLLVLPALYAKFGKW 1026


>gi|145218832|ref|YP_001129541.1| preprotein translocase subunit SecD [Prosthecochloris vibrioformis
           DSM 265]
 gi|145204996|gb|ABP36039.1| protein-export membrane protein SecD [Chlorobium phaeovibrioides
           DSM 265]
          Length = 594

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 76/175 (43%), Gaps = 4/175 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR G+  +I    A+++++   ++    L A   L+L++   L   A F   
Sbjct: 421 GPSLGADYIRAGLQSLIWGFSAVVVFMIFYYR-QGGLAADVALVLNVLIVLSVLAGFNAS 479

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            +L  +A ++  +G +V+  V++Y+R+R+ +       S    + +  +      + + +
Sbjct: 480 LSLPGIAGIVLTMGMAVDANVLIYERIREELAA---GRSITSALSEGYDRAFSSILDSHV 536

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               +   +  +G   I  FA+ +  G   +  ++I +   I   +      +++
Sbjct: 537 TTLAAAFLLYTYGIGPIQGFAVTLMIGTAASLFTAIVVTREIFRLLVSKNLMSSK 591



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 54/238 (22%), Positives = 100/238 (42%), Gaps = 43/238 (18%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK------------------- 41
           M+N  + ++L   +  + L   +P +   S+  +  +                       
Sbjct: 4   MKNKRYNLLLIVGVTLLALWSLVPTWKEYSLGKQLEAFSSPRDSLNFVLNHRDEIEDARQ 63

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             + LGLDL+GG HLV+EVD        + ++  +  +   K    +  + +        
Sbjct: 64  KGLKLGLDLKGGMHLVMEVD-------QIDLFMQKAWNRDAKFDAIMEEVGRQAA----- 111

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
              +   + + D V+   +  N +L    +    +  ++ EI   L +         A+ 
Sbjct: 112 ---ATDAD-VIDLVSAAFRKQNIRL---SRYFYDIRNSDSEIQGKLRKEAA-----DALV 159

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           ++ EIIR RIDQ G++E  I   G+ +I+I+LPG  D +R+R LL  TAK+ F  +  
Sbjct: 160 RAREIIRNRIDQYGVAEPMITTQGNRKIIIELPGISDENRMRNLLKGTAKLEFRLLRE 217


>gi|291440767|ref|ZP_06580157.1| export membrane protein secD [Streptomyces ghanaensis ATCC 14672]
 gi|291343662|gb|EFE70618.1| export membrane protein secD [Streptomyces ghanaensis ATCC 14672]
          Length = 573

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 105/556 (18%), Positives = 198/556 (35%), Gaps = 49/556 (8%)

Query: 45  SLGLDLRGGSHLVLEVDEDD-----FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-I 98
            LG+DL GG+ + L    +           +      +   +   G+    ++    + I
Sbjct: 10  RLGIDLAGGTSITLAAVPEAGQESAINKTNMDTAVSIMERRVNGLGVSEAEVQTQGTRNI 69

Query: 99  TLSFADSRFKENIADKVTLFLQGVNS-----KLNVDPKKNLLV----------------- 136
            ++       +   ++V    +         +L                           
Sbjct: 70  IVNIPKGTNSKQAREQVGTTAKLYFRPVIATELAGGGAAPTPSASGSPSGEGAGKDKATE 129

Query: 137 ---------TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                                 +        A+  +++           ++         
Sbjct: 130 KATEKAADGKPDGSSPPDSTGPSAGSTTQGRALTDALKADETPSAGASAADEATPTPTPT 189

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF--LRDSDGNQYLVED 245
                     D S L+                                      Q  +  
Sbjct: 190 PSATGGTSGDDDSGLQARYAALDCTKEAVRAKAGDGAKASDSTVACGRNSQGQWQKYLLG 249

Query: 246 KVEISGIHL-NGATANFDPKTHKPVVDISFDEMGARRFFEVT-----RDNIGKPLAVVLD 299
              + G  +                V + F + GA++F ++T     + +     A+VLD
Sbjct: 250 PAAVDGTDVDKAQAVLNTQTGAGWTVTMDFTDQGAKKFADITGRLAQKQSPQNQFAIVLD 309

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G V++ P ++QA+  G A+ISGNFT +++  LA ML  G+LP+         V A LG +
Sbjct: 310 GEVVSDPYVSQALTGGNAEISGNFTQQSSQELANMLSYGALPLTFREDSVTTVTAALGGE 369

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLP 415
            +  G  A   GL L+VL+++V Y     +A  S+ ++  LT  ++SLLG T+     LP
Sbjct: 370 QLQAGLIAGAIGLALVVLYLLVYYRGLSFIALLSLLVSAALTYVIMSLLGPTIGFALNLP 429

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G ++ IG+  DS I+  ER+R+E R+ +++  +++  + RA  TI  S+  + +A  
Sbjct: 430 AVCGAIVAIGITADSFIVYFERVRDEIREGRTLRPAVERAWPRARRTILVSDFVSFLAAA 489

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           VLF    G V+GFA T+GL+ L+ +       + ++  + R K   S           + 
Sbjct: 490 VLFVVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPLLTLMARRKFFASGHKWSGLDPEALG 549

Query: 536 DCIAIQFMRARFWGVG 551
               ++  R     V 
Sbjct: 550 AKPPLRRTRRSVPAVA 565



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 47/125 (37%), Gaps = 7/125 (5%)

Query: 707 TLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           T    +L G       NL AV   +  IG + +  +V ++R+R  ++      + R  ++
Sbjct: 411 TYVIMSLLGPTIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIRE---GRTLRPAVE 467

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++        + +   +F++   + V     +  FA  +    ++          P+L  
Sbjct: 468 RAWPRARRTILVSDFVSFLAAAVLFVVTVGKVQGFAFTLGLTTLLDVVVVFLFTKPLLTL 527

Query: 823 IYDWR 827
           +   +
Sbjct: 528 MARRK 532


>gi|315186570|gb|EFU20329.1| protein-export membrane protein SecD [Spirochaeta thermophila DSM
           6578]
          Length = 572

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 138/447 (30%), Positives = 231/447 (51%), Gaps = 34/447 (7%)

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++      +   L+      L    +     +       D     A+++++E++  RI
Sbjct: 129 LKELRNRTLQLGLDLSGGLTVTLAPDFSSLAERLG--HEPTDVERRDAVDRALEVLNNRI 186

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS--------- 222
           D+ G++E  I++L  ++ILI++PG+ DP+R+   L    +++FH V    +         
Sbjct: 187 DRFGVTEPQIRKLEGNKILIEIPGDPDPTRVNSFLMGKGRLTFHIVDDETTQKLIEYQRQ 246

Query: 223 ----------------KKGFMFGVRFLRDSDGNQYLVEDKVE-----ISGIHLNGATANF 261
                             G      + +D  G   LV          + G +L  A  + 
Sbjct: 247 TGITDPAILAERVDFVPAGTKIAGYYTKDKYGVDKLVRSIAIYEEVGLDGTYLTSAQVSR 306

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           DP T KPVV  S +  G+  F+++T  N+ + LA+VLD +V     I + I         
Sbjct: 307 DPLTGKPVVLFSLNSEGSDIFYKLTSANVDRSLAIVLDDKVKAYATIQEPIRGNVQITG- 365

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
            F+ E A  ++ +LR  +LP+ L I +   VGA LG DSI +G  AIV G  L+V FMI+
Sbjct: 366 -FSTEEAQNISLILRTAALPVDLVIEDYEAVGASLGEDSIRRGVQAIVLGFALVVFFMIL 424

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   G+VAD ++ LN+    ALLS+   TLTL SIAG++L +G+AVD+N+++ ERI+EE
Sbjct: 425 YYKGAGIVADIALLLNLFFMTALLSVFNFTLTLTSIAGVILTVGMAVDANVIIYERIKEE 484

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  ++   ++  GFS+A+ TI D+N+T  IA + L   G G ++GFA+T+ + I+ SMF
Sbjct: 485 LRLGKTPASAVKAGFSKAFWTIVDANVTTFIAAIFLSQVGRGPIQGFAVTLAIGIVSSMF 544

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPL 528
           TA+ + R +  +++  +K+K + I+  
Sbjct: 545 TALVVSRLIFDYLVEQRKVKKLSISWR 571



 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 98/225 (43%), Gaps = 4/225 (1%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                       +R   Q      +      +  +   +     I++ E VG  +  + I
Sbjct: 345 DKVKAYATIQEPIRGNVQITGFSTEEAQNISLILRTAALPVDLVIEDYEAVGASLGEDSI 404

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           R+G+  +++    ++ ++ + +K    + A   L+L++       ++F     LT++A V
Sbjct: 405 RRGVQAIVLGFALVVFFMILYYK-GAGIVADIALLLNLFFMTALLSVFNFTLTLTSIAGV 463

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  +G +V+  V++Y+R+++ ++L     +    +    ++     V  ++  FI+ + +
Sbjct: 464 ILTVGMAVDANVIIYERIKEELRL---GKTPASAVKAGFSKAFWTIVDANVTTFIAAIFL 520

Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  G   I  FA+ +A GIV +  +++ ++  I  ++ + R    
Sbjct: 521 SQVGRGPIQGFAVTLAIGIVSSMFTALVVSRLIFDYLVEQRKVKK 565


>gi|118588113|ref|ZP_01545523.1| transporter, AcrB/AcrD/AcrF family protein [Stappia aggregata IAM
           12614]
 gi|118439735|gb|EAV46366.1| transporter, AcrB/AcrD/AcrF family protein [Stappia aggregata IAM
           12614]
          Length = 1188

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 58/526 (11%), Positives = 137/526 (26%), Gaps = 42/526 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R    + +L   +   G+             +  P                   +  + 
Sbjct: 9   LRRPKTVFVLMLALIVAGVAT-----YISIPKEASPDIDLPIFY---------ISITQQG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              +     L    +     L           +    I L F  S  K+     V   + 
Sbjct: 55  ISPEDSERLLVRPMETELRGLDGLKEITAIASESHAGIVLEFDISFNKDEALADVRDKVD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              SKL  + ++  +          ++   + +       + +    R+  D+I   ++ 
Sbjct: 115 QAKSKLPDEAEEPTITEMNFALAPTMIIALSGNVPERTLYKHA----RRLKDEIEAIDTV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      L    D  +L     T  ++     L N             R +    
Sbjct: 171 RSADLTGHREELLEVLIDTQKLESYSITQQELLNSLQLNNQLVPAGFIDGGKGRFNVKVP 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            LVE   ++                      +   + G           I +        
Sbjct: 231 GLVETAEDV--------------------YTLPLKQSGEGVVTLADVAEIRRTFKDPNAY 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +   +          +               +             
Sbjct: 271 TRVNGNRAIALQVVKRIGTNIIENNAAVREVVENASKDWPETVRVDMMLDQSNNIFEVLG 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +      LV+I++   +      L+   +I  + ++   +L  +G T+    + G+
Sbjct: 331 SLQSSILTAIFLVMILVLAALGMR-SALLVGLAIPTSFMVGFLILGGVGYTVNNMVMFGL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +GL VD  I++ E    +  +      +        +  I  S  T L+A + +  +
Sbjct: 390 VLTVGLLVDGAIVMTEYADRKIHEGMEDREAYIRAAKLMFWPIVSSTATTLVAFLPMLLW 449

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
               G  +    I + + +  S+FTA+  +      + +     + 
Sbjct: 450 PGVAGEFMSYLPIMVIIVLTASLFTAMVFLPVTGGILAQVSHFLNR 495



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 82/229 (35%), Gaps = 9/229 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVP 647
            D++ +R   +          N       + R+     ++ A    V+E   K   E V 
Sbjct: 255 ADVAEIRRTFKDPNAYTRVNGNRAIALQVVKRIGTNIIENNAAVREVVENASKDWPETVR 314

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
           +  + +      ++   L    +  + +  I +L  + +R      L   T+ ++     
Sbjct: 315 VDMMLDQSNNIFEVLGSLQSSILTAIFLVMILVLAALGMRSALLVGLAIPTSFMVGFLIL 374

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            G     G   N   +  ++  +G  V+  +V+ +      +     +  R+   ++   
Sbjct: 375 GGV----GYTVNNMVMFGLVLTVGLLVDGAIVMTE---YADRKIHEGMEDREAYIRAAKL 427

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                V ++    ++ LPM +W G   G F   +   +++  ++S+F A
Sbjct: 428 MFWPIVSSTATTLVAFLPMLLWPGVA-GEFMSYLPIMVIIVLTASLFTA 475



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/185 (16%), Positives = 69/185 (37%), Gaps = 5/185 (2%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                 DG  +  V+    P      T  +  ++K +      + +        +  +E  
Sbjct: 891  EIVRRDGLYSMFVKAAVNPESGSNPTEQVAALQKWLDTQEWPANVFLKFRGADEDQQESG 950

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVA 724
               I  ++ S   M + +  +F  +Y  +  ++T++L +   L    +    F++     
Sbjct: 951  EFLIKAMVASLFLMFLILLTQFNSFYQTILTLSTVVLSVFGVLLGMLITQQPFSIIMTGT 1010

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ L G  VN+ +V+ D      +     +   D I K+  + +   + T++     ++
Sbjct: 1011 GVVALAGIVVNNAIVLIDTYN---RFLEDGLEPVDAILKTSAQRIRPILLTTITTIAGLV 1067

Query: 785  PMAVW 789
            PMA  
Sbjct: 1068 PMATM 1072


>gi|222086411|ref|YP_002544945.1| acriflavin resistance (multidrug efflux transporter) protein
           [Agrobacterium radiobacter K84]
 gi|221723859|gb|ACM27015.1| acriflavin resistance (multidrug efflux transporter) protein
           [Agrobacterium radiobacter K84]
          Length = 1054

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/634 (10%), Positives = 167/634 (26%), Gaps = 43/634 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++  +++   GL            +   P                    + +  
Sbjct: 29  RRPILALVFNTLMVVAGLAA-----YFGVEVRELPDVDRPVVT---------VRTMFDGA 74

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V+  L    +   + +        S    Q+++TL F+D+      A+ V   +  
Sbjct: 75  APQTVDQELTKVIEGAVARVSGLKSVSSSSSFGQSRVTLEFSDAIDLSVAANDVRDAIGR 134

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  +     +V        I+      + +     + +  +  +  D++   +   
Sbjct: 135 ITEQLPDEADAPQIVKADSDSQPIMRLAVTSNTLTMD--DLTQLVDNEITDRLASVDGIA 192

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D   L     T   ++                            
Sbjct: 193 DVELYGDQEKVFRIDVDQGALAGRGLTIGDLTTALATAALDVPAGSLKSNRQDIVVRATA 252

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + S + +                          R        +           
Sbjct: 253 ALQTPEDFSRLIVKD------------------------RVRLADVATVTLGPRDGTTAL 288

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ +          + A L           +   +     G+   
Sbjct: 289 RSNGVQGIGLGIIRQAQSNTLNISNGVKAVVAQLSKSLPEGTRIAITSDDAVFIQGAIHE 348

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   +V IV+++ +   +  L+   ++ + +  TLA L ++G ++ + ++  IV
Sbjct: 349 VVLALILSGLIVTIVIYLFLRDWRATLIPAVTMPVALTGTLAALYMVGFSINILTLLAIV 408

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  +  T     + L F  
Sbjct: 409 LATGLVVDDAIVVLENIVRRRSEKMGPRAAAVLGTREVFFAVIATTATLAAVFIPLSFLP 468

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F   +  S+ +S   A+++   +   ++  +  +   +             
Sbjct: 469 GQVGGLFREFGFVLAFSVGLSSIVALTLCPMLASRMLTREMREDHGMLGRFGVLFSSVYR 528

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      V I+      +  +    G+   +       L +L       + +    
Sbjct: 529 RTLGACLNAPVVVIAFCAIFSAAAIFAFLGVKSELTPNEDRALVMLRLTTPQGASLDYTK 588

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           + L+  + + Q      +          +    T
Sbjct: 589 DQLRRVEENLQPLMDSGDIRNVYAISGQNGQVNT 622



 Score = 85.9 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 96/248 (38%), Gaps = 7/248 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              V L+ V +     + G  + ++   +   L  ++    +++  +  ++ V  ++++ 
Sbjct: 266 KDRVRLADVATVTLGPRDGTTALRSNGVQGIGLGIIRQAQSNTLNISNGVKAVVAQLSKS 325

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDI 704
           +P  T            +  I + ++ +I+S + + I I      W   L    T+ + +
Sbjct: 326 LPEGTRIAITSDDAVFIQGAIHEVVLALILSGLIVTIVIYLFLRDWRATLIPAVTMPVAL 385

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
           T TL    + G   N+  + A++   G  V+D +VV + +   ++  +  +  R      
Sbjct: 386 TGTLAALYMVGFSINILTLLAIVLATGLVVDDAIVVLENI---VRRRSEKMGPRAAAVLG 442

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
             E     + T+       +P++   G V      F   +AF + +++  ++ +   +  
Sbjct: 443 TREVFFAVIATTATLAAVFIPLSFLPGQVGGLFREFGFVLAFSVGLSSIVALTLCPMLAS 502

Query: 822 FIYDWRAK 829
            +     +
Sbjct: 503 RMLTREMR 510



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 89/242 (36%), Gaps = 11/242 (4%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             S + SL+ G ++ Q    ++   V +     ++++  + +E VK+    ++P       
Sbjct: 792  MSVIASLKEGAVAPQLTREQQLASVAITAGLKNNMSLGQAVEEVKRIAAPLLPPGARLIP 851

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                  +        +     + I + + +  +F+   +   I    + +      FAL 
Sbjct: 852  LAEAATLQENSSGMALT-FGFAIIIIFLVLAAQFESVLS-SLIIMSTVPLGLACAIFALV 909

Query: 715  --GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              G   N+ +   ++ L+G    + +++ +      +L       R+ I+++    L   
Sbjct: 910  ITGSSLNIYSQIGLVLLVGVMAKNGILIVEFAN---QLRDAGEGVREAIERACALRLRPV 966

Query: 773  VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + T +A  +  +P+      G     +    +  G+  A   ++++  P+   +    AK
Sbjct: 967  MMTMIATILGGVPLVFAHGAGAEARIALGWVIVGGLGFATLVTLYV-TPVAYLLIARFAK 1025

Query: 830  NA 831
              
Sbjct: 1026 PQ 1027


>gi|320355100|ref|YP_004196439.1| acriflavin resistance protein [Desulfobulbus propionicus DSM 2032]
 gi|320123602|gb|ADW19148.1| acriflavin resistance protein [Desulfobulbus propionicus DSM 2032]
          Length = 1030

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 72/662 (10%), Positives = 180/662 (27%), Gaps = 40/662 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++   +I   GL       +    + ++P +                  V    
Sbjct: 9   QRPVLAMVTSLLIIIAGL-----QAIGSLNVRQYPKSDNAVVTVT---------TVYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+    +   +             Q  + I+     +        +++  +  
Sbjct: 55  SADLVRGFITTPLERAIAAADGIDYLQSQSAQGVSTISARLRLNYDPIKALSEISSKVDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  ++   +           +    +    E +  ++R    ++   +   
Sbjct: 115 VRGDLPPEAEIPIINVESADSKFASAY-LSFTSELLEQNEITDYLVRVVQPRLSALQGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP R+     + A++                       + G   
Sbjct: 174 RADVLGARTFAMRIWLDPDRMAAFNVSPAQVRQ------------ALAANNFLAAVGKTK 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V ++         +F          +   E             +           
Sbjct: 222 GSLVQVNLTANTDMRTVEDFK--------RLVIREDQGALVRIEDVGEVVLGAEDYESEV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +    I+      A +           +          +   
Sbjct: 274 RFSGQTAVFMGIWPLPNANSLEVIKRVRAEMAAIDKQLPSGLTARIAYDGTDYIENAIKE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T +    +V+I++F+ +   +  L+   +I L++I  + L+ + G T+ L ++  IV
Sbjct: 334 VVKTLSETLVIVVIIIFLFLGSLRSALIPVVTIPLSLIGAMFLMQVFGFTINLLTLLAIV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +     + ++   +  +      + +    IT       +   G
Sbjct: 394 LSVGLVVDDAIVVVENVERHLGEGKTPIEAALLSGRELVNPLISMTITLAAVYAPIGLQG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS--RFFLIPD 536
              G   R FA T+  ++ IS   A+++   M   +++           +      L   
Sbjct: 454 GLTGSLFREFAFTLAGAVTISGVVALTLSPMMSSRLLKAGMTDRGLAGKIKRDFNRLRIT 513

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                 +  R       +   +  + +         +       +          S +  
Sbjct: 514 YGRWLEITLRHRPAVYVLWIVLSLLAVPLFKMSAKELAPTEDQGVIFGIIDSAANSTLDQ 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           N       +  F +           +   G S    +  +  ++ I EI+P   ++   I
Sbjct: 574 NSLYSAAVNQVFHSIAENNFVFQLTEPSSGFSGMVVKPWQERERTIFEIMPEVAMKLHAI 633

Query: 657 VG 658
            G
Sbjct: 634 PG 635



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 86/233 (36%), Gaps = 7/233 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V +  V   +   +  +   +       F+        +S+   + +      I + +P 
Sbjct: 254 VRIEDVGEVVLGAEDYESEVRFSGQTAVFMGIWPLPNANSLEVIKRVRAEMAAIDKQLPS 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                    G       I++ +  +  + + ++I I++       AL  + T+ L +   
Sbjct: 314 GLTARIAYDGTDYIENAIKEVVKTLSETLVIVVIIIFLFLGSLRSALIPVVTIPLSLIGA 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +    +FG   NL  + A++  +G  V+D +VV + +    +      +  +    S  E
Sbjct: 374 MFLMQVFGFTINLLTLLAIVLSVGLVVDDAIVVVENV---ERHLGEGKTPIEAALLSGRE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +   +  ++       P+ + G   GS+   FA  +A  + ++   ++ ++ 
Sbjct: 431 LVNPLISMTITLAAVYAPIGLQGGLTGSLFREFAFTLAGAVTISGVVALTLSP 483


>gi|58038825|ref|YP_190789.1| acriflavin resistance protein F [Gluconobacter oxydans 621H]
 gi|58001239|gb|AAW60133.1| Acriflavin resistance protein F [Gluconobacter oxydans 621H]
          Length = 1092

 Score =  140 bits (351), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 76/613 (12%), Positives = 170/613 (27%), Gaps = 48/613 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G++           +   P       +    +  GGS        
Sbjct: 10  RPVGTTLLAVALVMGGIM-----GYFTLPVADLPDVDFPVIMVTA-NQPGGS-------- 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +             Q +ITL F  SR     A  V   LQG 
Sbjct: 56  PSEIASTIAGPLERHLGAISGVTEMTSESTVNQTRITLQFDLSRDINGAARDVEAALQGA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    + N            VL    +        E         I Q+   E    
Sbjct: 116 RQDLPTTLRSNPTYRKANSNGPPVL-ALTLTSSTRTPQELYDFASNILIPQLSQIEGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P RL +       +       N              D++G + +
Sbjct: 175 VNIRGASLPAVRVEINPLRLFRYGIGFEDLRAALASANAHTPKG------FLDANGERMM 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    + +                +   D+      ++         +   +  +     
Sbjct: 229 LSTNDQAT--------------KAEEYRDLIIAYRDSQPVRLTDVAEVNDSVEDLRQAGY 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L            +   +   TI+       +L++         +          S    
Sbjct: 275 LNGQAAIICTVFTQGGANVIKTIDGIRSRLPVLQSALPGNTDISILIDRSKTIRASLDDT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T  I   LV+ V+ + +      +V    + +++I T   +SL+G  L   S+  + +
Sbjct: 335 KQTLIIAVVLVVAVVLLFLRSLSAIMVPAIVVPVSIIGTFGAMSLMGYQLDNMSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I            +   G +    T+    ++ ++    +   G 
Sbjct: 395 STGFVVDDAIVVLENIARYMEMGYERQEAAIKGTTEVAFTVVSITVSLIVVFAPIMLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPLS 529
             G     FA+TM +++ IS+  ++++   +   +          +  K  + ++ +   
Sbjct: 455 IAGRLFHEFAMTMVITLCISLVLSLTLTPMISAQLLTHTDDQGPGLWKKIGRFLERSING 514

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +           + +     +  +  +      +  +  G I   V+A++ +
Sbjct: 515 ITAGYGRSLDWALGHQFLIAMSLPATLVLAGVLYVKMPKGFFPSEDTGQIMGRVVADQSI 574

Query: 590 DLSVVRSNLESLQ 602
               ++  +    
Sbjct: 575 SFQALQKIVVKAM 587



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 51/137 (37%), Gaps = 6/137 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +     + + I  T G  +L G + +  ++ A+    G+ V+D +VV + + 
Sbjct: 352 FLRSLSAIMVPAIVVPVSIIGTFGAMSLMGYQLDNMSLMALTISTGFVVDDAIVVLENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +        ++   K   E     V  +++  +   P+ + GG        FA+ M 
Sbjct: 411 --ARYMEMGYERQEAAIKGTTEVAFTVVSITVSLIVVFAPIMLMGGIAGRLFHEFAMTMV 468

Query: 803 FGIVVAASSSIFIAAPI 819
             + ++   S+ +   I
Sbjct: 469 ITLCISLVLSLTLTPMI 485



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 68/158 (43%), Gaps = 7/158 (4%)

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++     L  ++TL       +    + G EF+L A+  V+ LIG    + +
Sbjct: 921  VYIVLGILYESLIHPLTILSTLPSAGVGAILALQVCGEEFSLMAMIGVILLIGIVKKNAI 980

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ D     +      +S  D I ++ +      + TS+AA    +P+ +   +G  +  
Sbjct: 981  MLIDFA---LVAQREGLSPTDAIRQASHLRFRPILMTSLAAAFGAVPLIIGNGYGCELRR 1037

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               I +  G+VV+   +++    I L++  +     R+
Sbjct: 1038 PLGIAILGGLVVSQLLTLYSTPVIFLYLDRFGRAMGRL 1075


>gi|109947899|ref|YP_665127.1| cation/multidrug efflux pump protein [Helicobacter acinonychis str.
           Sheeba]
 gi|109715120|emb|CAK00128.1| cation/multidrug efflux pump protein [Helicobacter acinonychis str.
           Sheeba]
          Length = 1028

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 68/595 (11%), Positives = 161/595 (27%), Gaps = 43/595 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++    ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFAFAIIFFGVMGFKKLTVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    +  
Sbjct: 61  VTDKIEESVMGIDGIKKITSTSARNVSVVVIEFELEKPNEEALNDVVNKISSVRFD-DSS 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            +K  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IQKPSVNKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKISGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENIEVDGGRIVNSQRELSILVNANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTSYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AVLAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWIGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++         +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMEKRKASYEGVKEIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   I+  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVIVNPRHSRFYVWSEPFFKALESHYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID---FKGGIQLGVLANRPVDLSVVRSNL 598
              +    +  +    L     L         +G  Q+ + A   V +  +   +
Sbjct: 513 HKLIVFIAVVLVFVGSLFVASKLGMDFMLKEDRGRFQVWLRAKPGVSIDYMTKKV 567



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ +  + + + + +   ++        + T+ L  +       L     ++ ++  ++ 
Sbjct: 856  LIALATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLIL 915

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+
Sbjct: 916  LIGMVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLAL 972

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 973  ASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 38.5 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPSYEIRPFLDTTSYIRTSIEDVKFDLVLGAVLAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +  R    
Sbjct: 360 SIMGTFALIQWIGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMEKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVKEIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|299133437|ref|ZP_07026631.1| acriflavin resistance protein [Afipia sp. 1NLS2]
 gi|298591273|gb|EFI51474.1| acriflavin resistance protein [Afipia sp. 1NLS2]
          Length = 1027

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/521 (12%), Positives = 156/521 (29%), Gaps = 29/521 (5%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           +        ++  +  +       +  Q  + I +    +      
Sbjct: 45  VTVTTSYPGASPELMQGFITTPIEQAVASAEGVDYITSTSVQGTSTIQVYVRLNFDPNQA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             +V   +  V   +  +    ++  +T +  +++      D++   AI  S  + R   
Sbjct: 105 LTEVLAKVNSVKYLIPKESNDPVITKSTGQTTAVMYIGFASDELGGSAI--SDYLTRVIQ 162

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
             +   +              +    DP+R+     T A ++      N           
Sbjct: 163 PILSTVDGVASADILGGQTFAMRLWLDPARMAGRGVTAADVAAAIQANNYQAAAGQTKGY 222

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           F+  +      + D                     +    +                 + 
Sbjct: 223 FIVSNVTTNSDLSD--------------------VQSFKRMVVKSKNGGLVRMEDIATVE 262

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                      +              Q +    ++    L   +     P     V   +
Sbjct: 263 LAAQSNDSSVAMNGQHAIFIGVQATPQGNPLTIVKGVRALFPEIERSLPPTLKMKVAYDS 322

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S    + T      +V++V+F+ +   +  ++   +I L++I   +L+ L G +
Sbjct: 323 TKFIQSSIDEVEKTLGEAVIIVIVVIFLFLASLRSVIIPVVTIPLSLIGVCSLMLLAGFS 382

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           + L ++  +VL IGL VD  I+V E I     + +S   +  +G       +    IT  
Sbjct: 383 INLLTLLAMVLAIGLVVDDAIVVVENIHRHLEEGKSPVQASMIGAREIVGPVISMTITLA 442

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
                + F G   G   R FA T+  S+++S   A+++   M   ++ + +         
Sbjct: 443 AVYAPIGFLGGVTGALFREFAFTLAGSVIVSGIIALTLSPMMCSILLTHVEQGWFARKVD 502

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
           + F  + D    +  R+  +    ++   +    + F +  
Sbjct: 503 AVFRSVTDWYGNRLDRSLDYRPITALFALVILFLVGFLYTH 543



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 78/238 (32%), Gaps = 11/238 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       + +   + +S    +     F G +                  +   +++ +
Sbjct: 253 VRMEDIATVELAAQSNDSSVAMNGQHAIFIGVQATPQGNPLTIV--KGVRALFPEIERSL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
              + +    ++         E+ +     VII  + + +++         +  + T+ L
Sbjct: 311 PPTLKMKVAYDSTKFIQSSIDEVEKTLGEAVIIVIVVIFLFLA---SLRSVIIPVVTIPL 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +        L G   NL  + A++  IG  V+D +VV + +    +      S      
Sbjct: 368 SLIGVCSLMLLAGFSINLLTLLAMVLAIGLVVDDAIVVVENIH---RHLEEGKSPVQASM 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
               E +G  +  ++       P+   GG        FA  +A  ++V+   ++ ++ 
Sbjct: 425 IGAREIVGPVISMTITLAAVYAPIGFLGGVTGALFREFAFTLAGSVIVSGIIALTLSP 482



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 60/155 (38%), Gaps = 6/155 (3%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            V    + I + + +  +F+     L  + ++ + I+  L          N+     +LTL
Sbjct: 848  VAFGFALIIIFLVLAAQFESIRDPLVILISVPMAISGALVPLFFGVATINIYTQVGLLTL 907

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG      +++ +   +        +  R+ I+K+    L   + T+ A    ++P+   
Sbjct: 908  IGLISKHGILMVEFANE--LQLKEGLGKREAIEKAARVRLRPILMTTAAMVTGLIPLLTA 965

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
               G +   S  + +  G+ +    ++F+   + +
Sbjct: 966  SGAGAASRFSIGLVVVAGMTIGTMFTLFVLPAVYV 1000


>gi|147677370|ref|YP_001211585.1| preprotein translocase subunit SecD [Pelotomaculum
           thermopropionicum SI]
 gi|146273467|dbj|BAF59216.1| preprotein translocase subunit SecD [Pelotomaculum
           thermopropionicum SI]
          Length = 411

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 133/384 (34%), Positives = 232/384 (60%), Gaps = 26/384 (6%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +  +      V    ++Q+M II  R++  G++E  IQ+ GS RI+++L G +DP   
Sbjct: 52  VVLEATDTPEAPVTPERVKQAMAIIENRVNAFGVAEPIIQQQGSRRIIVELAGVEDPDEA 111

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            + L  TA + F                             +    ++G HL  A  + D
Sbjct: 112 IRTLIKTAYLEF--------------------------KTEDGTTVLTGRHLKNAVESKD 145

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
           P++ +  V++ F+  GA+ F +VT  N+ + +A++LDG VL APV+ + IP+G+A+I+G 
Sbjct: 146 PQSGRITVNLEFEPEGAKIFADVTAANVDRRIAILLDGNVLQAPVVQEPIPNGRAEITGY 205

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            ++E A  +A +LR+G+LP+KL ++E+R VG  LG+DS+ +   A +AGL  I++FM   
Sbjct: 206 ESLEEAHNIAILLRSGALPVKLEVMEKRTVGPTLGADSLNRSVKAGIAGLAAILIFMAAY 265

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   GLVA+ ++ +  +L L + + L  T+TLP IAG +L +G+AVD+N+++ ER++EE 
Sbjct: 266 YRVPGLVANLALVIYALLVLIIFAALNVTMTLPGIAGFLLSMGMAVDANVIIFERLKEEL 325

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
              +++  ++D+GF RA+  IFDSN+T LIA  VL++FG G ++GFA+T+ + IL+SMFT
Sbjct: 326 WTGKTLRSAIDVGFKRAFVAIFDSNVTTLIAAAVLYYFGTGPIKGFAVTLSIGILVSMFT 385

Query: 503 AISIVRAMMIFIIRYKKMKSIDIN 526
           AI++ R ++  +     ++++ + 
Sbjct: 386 AIAVTRWLLHLVAASNLVRNVKMY 409



 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 75/169 (44%), Gaps = 4/169 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                VGP +  + + + +   I    A+LI++   ++    L A   L++     L  F
Sbjct: 230 MEKRTVGPTLGADSLNRSVKAGIAGLAAILIFMAAYYRVP-GLVANLALVIYALLVLIIF 288

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           A   +   L  +A  L  +G +V+  V++++R+++ +    T  + R  ID         
Sbjct: 289 AALNVTMTLPGIAGFLLSMGMAVDANVIIFERLKEELW---TGKTLRSAIDVGFKRAFVA 345

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              +++   I+   +  +G   I  FA+ ++ GI+V+  ++I +   +L
Sbjct: 346 IFDSNVTTLIAAAVLYYFGTGPIKGFAVTLSIGILVSMFTAIAVTRWLL 394



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 51/411 (12%), Positives = 122/411 (29%), Gaps = 28/411 (6%)

Query: 16  CIGLLIALPNFLPQSMLDRFPS--AMP-KNRISLGLDLRGGSHLVLEV-DEDD--FVNGF 69
             G+++A+      ++   FP    +P    I  GLDL+GG H+VLE  D  +       
Sbjct: 9   LAGIILAVAAVAVLAVWPVFPGVKWLPFTKLIKQGLDLKGGVHVVLEATDTPEAPVTPER 68

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
           ++     + + +   G+    ++Q  + +I +  A     +     +             
Sbjct: 69  VKQAMAIIENRVNAFGVAEPIIQQQGSRRIIVELAGVEDPDEAIRTLIKTAYLEF----- 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                       ++ + VL+  ++   +     QS  I      +   ++       ++ 
Sbjct: 124 ----------KTEDGTTVLTGRHLKNAVESKDPQSGRITVNLEFEPEGAKIFADVTAANV 173

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
                           ++         ++    S +        LR       L   +  
Sbjct: 174 DRRIAILLDGNVLQAPVVQEPIPNGRAEITGYESLEEAHNIAILLRSGALPVKLEVMEKR 233

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
             G  L   + N   K     +      M A         N+   +  +L   +  A  +
Sbjct: 234 TVGPTLGADSLNRSVKAGIAGLAAILIFMAAYYRVPGLVANLALVIYALLVLIIFAALNV 293

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              +P     +        A ++        L     +    +VG      +I+      
Sbjct: 294 TMTLPGIAGFLLSMGMAVDANVIIFERLKEELWTGKTLRSAIDVGFKRAFVAIFDSNVTT 353

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +    +      + Y   G +  F++ L++ + +++ + +  T  L  +  
Sbjct: 354 LIAAAV------LYYFGTGPIKGFAVTLSIGILVSMFTAIAVTRWLLHLVA 398


>gi|217033554|ref|ZP_03438983.1| hypothetical protein HP9810_905g73 [Helicobacter pylori 98-10]
 gi|216944079|gb|EEC23510.1| hypothetical protein HP9810_905g73 [Helicobacter pylori 98-10]
          Length = 1026

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/568 (11%), Positives = 157/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +    +     +   +       +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKKTIKPMLQKIDGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILVNANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++V+ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISVMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMISSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKLGMEFM 540



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 88/253 (34%), Gaps = 12/253 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              ++ + L  +    E+     IS  N       L + +         T+V +  K+ + 
Sbjct: 773  KYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPKAGISLGEILTQVSKNTKEWLV 832

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLIL 702
            E          +         L     + +  + + + + +   ++        + T+ L
Sbjct: 833  EGANYRFTGEADDAKETNGEFL-----IALATAFVLIYMILAALYESILEPFIIMVTMPL 887

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
              +       L     ++ ++  ++ LIG    +  ++ D   +  K     ++ ++ I 
Sbjct: 888  SFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANEERK---KGLNIQEAIL 944

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             +    L   + T++A    +LP+A+    G ++     I M+ G++++   S+ I    
Sbjct: 945  FAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVF 1004

Query: 820  LLFIYDWRAKNAR 832
               +     K  R
Sbjct: 1005 YRLLAPIDDKIKR 1017



 Score = 39.7 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 77/240 (32%), Gaps = 6/240 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SVMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    + I   I
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALSYVVVVTIIPMI 476


>gi|126658650|ref|ZP_01729796.1| cation or drug efflux system protein [Cyanothece sp. CCY0110]
 gi|126620087|gb|EAZ90810.1| cation or drug efflux system protein [Cyanothece sp. CCY0110]
          Length = 1048

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/587 (10%), Positives = 166/587 (28%), Gaps = 45/587 (7%)

Query: 5   PWLVIL-YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            WL+++   ++   G+       + Q  LD FP   P          +      +     
Sbjct: 17  RWLIVIGAILVTLWGVF-----NITQMPLDVFPEFAPP---------QVDVQTEVPGLAP 62

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + +   + +  +   + L        S +   + + + F  +         VT  LQ ++
Sbjct: 63  EEIEAQITVPIESAVNGLPGVTTVRSSSKVGLSMVQVVFDQNADIYKARQAVTERLQQIS 122

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S+   +     +        +I+     +       +E    +     +Q+       Q 
Sbjct: 123 SQFPENAHPPEISPLVSPLGTILQYAFTVKDQT-SLMELRRLVEGTVSNQVLSVPGVSQV 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   Q     +P +LR L  +   ++                        G+    
Sbjct: 182 TVYGGDERQKQVLVNPQKLRSLNISLTNVTEAAK--------------------GSNSNA 221

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                I G            ++ + +                    +    A+       
Sbjct: 222 PGGFLIGGGQELLIRGIGQVQSIEDLQTSVVKVKDGEPILLKDVATVKTGSALKRGDASF 281

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   + + +  +      +    + A L+             R       +     
Sbjct: 282 NGQPAVVMMINKQPDVDTPTVTKAVEAVIASLKPSFPEDVEITRTFRQANFIDAAIRNVS 341

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G+      +V +++ + ++  +  ++   +I L++I+ L  +   G  +   ++ G+V+ 
Sbjct: 342 GSLIQGIIIVSVIMLLFLMNWRTAIITLSAIPLSLIIGLLFMKAFGLGINTMTLGGLVVA 401

Query: 424 IGLAVDSNILVNERIR------EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           IG  VD  I+  E         +     +  F  +          +  S +  ++    +
Sbjct: 402 IGSVVDDAIVDMENCYRGLRTNQAQDNPKHPFQVVYDTSVEVRLAVIFSTVIIIVVFAPI 461

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G       +    SI  S   A+++  A+   ++  + +             +
Sbjct: 462 FSLTGVEGRIFAPMGLAYLFSIAASTLVAMTLSPALCAILLANQTLPPDGTFISRFVIRV 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              +    ++     +  ++   I +  ++ + G  +  +F+    +
Sbjct: 522 YRPLLNLSLKLPKIILCCALAALIATFAIVPSLGRVFLPEFQEKSMV 568



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 84/261 (32%), Gaps = 9/261 (3%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
             I+      + V    P+ L  V +      +              ++  +    D+  
Sbjct: 242 QSIEDLQTSVVKVKDGEPILLKDVATVKTGSALKRGDASFNGQPAVVMMINKQPDVDTPT 301

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFK 689
            T+ +E V   +    P                  IR     +I   I + +I +     
Sbjct: 302 VTKAVEAVIASLKPSFPEDVEITRTFRQANFIDAAIRNVSGSLIQGIIIVSVIMLLFLMN 361

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MR 745
           W  A+  ++ + L +   L F   FG+  N   +  ++  IG  V+D +V  +     +R
Sbjct: 362 WRTAIITLSAIPLSLIIGLLFMKAFGLGINTMTLGGLVVAIGSVVDDAIVDMENCYRGLR 421

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMA 802
            N         F+ + D S+   L     T +   +   P+    G     FA   +   
Sbjct: 422 TNQAQDNPKHPFQVVYDTSVEVRLAVIFST-VIIIVVFAPIFSLTGVEGRIFAPMGLAYL 480

Query: 803 FGIVVAASSSIFIAAPILLFI 823
           F I  +   ++ ++  +   +
Sbjct: 481 FSIAASTLVAMTLSPALCAIL 501



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 88/253 (34%), Gaps = 15/253 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       + LS V      +    ++ ++          +  +   SV       + +
Sbjct: 781  PISTPTGEMIPLSSVAKVEYGMGANVVNREDVSRLIVVSANVAERDLGSVVADIQATINQ 840

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY-FALGAIT 698
            +                     + +L+   I+  II  I M       F    F      
Sbjct: 841  QVQLPKGYFIQYGGQFEAEQNATNDLLVYSILAAIIITILMF------FSVKSFPATIAI 894

Query: 699  TLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             + L +    G  ++   G   ++ ++   +TL G +V + +++ D      + +   + 
Sbjct: 895  MINLPLALVGGIVSIIFSGGVMSIASLIGFITLFGVAVRNGLLLVDNYN---QKFAQGMG 951

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            F+D+I K   + +   + T++ + + + P+AV    G  ++   AI +  G+  + + ++
Sbjct: 952  FKDVIVKGSLDRVNAILMTALTSALGMFPLAVASGAGNEILQPLAIVVLGGLFTSTALTL 1011

Query: 814  FIAAPILLFIYDW 826
             +   +      W
Sbjct: 1012 LVIPALYAQFGKW 1024


>gi|320195939|gb|EFW70563.1| Multidrug transporter MdtC [Escherichia coli WV_060327]
          Length = 967

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/544 (11%), Positives = 156/544 (28%), Gaps = 30/544 (5%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +   +    +     +        S      +I L F   R     A  V   +    S 
Sbjct: 1   MASSVATPLERSLGRIAGVSEMTSSSSLGSTRIILQFDFDRDINGAARDVQAAINAAQSL 60

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
           L                 + ++    +        E       Q    I   +       
Sbjct: 61  LPSGMPSRPTYRKANPSDAPIMI-LTLTSDTYSQGELYDFASTQLAPTISQIDGVGDVDV 119

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
               L  +    +P  L     +   +       N  K          R        ++ 
Sbjct: 120 GGSSLPAVRVGLNPQALFNQGVSLDDVRTAISNANVRKPQGALEDDTHRWQIQTNDELKT 179

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
             E                       +                 +   +  V +  +  A
Sbjct: 180 AAE--------------------YQPLIIHYNNGGAVRLGDVATVTDSVQDVRNAGMTNA 219

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
                 +     + +   T+++       L++         + +        S    + T
Sbjct: 220 KPAILLMIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQT 279

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
             I   LV++V+F+ +  G+  ++   ++ +++I T A + L G +L   S+  + +  G
Sbjct: 280 LVISVALVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATG 339

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT---VVLFFFGG 482
             VD  I+V E I            +   G      T+   +++ +      +++    G
Sbjct: 340 FVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPG 399

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFLIPD 536
             +R FA+T+ ++I IS+  ++++   M  ++         K+++      ++       
Sbjct: 400 RLLREFAVTLSVAIGISLLVSLTLTPMMCGWMLKASKPREQKRLRGFGRVLVALQQGYGK 459

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +       R  GV +    ++     +      +     G +  G+ A++ +    +R 
Sbjct: 460 SLKWVLNHTRLVGVVLLGTIALNIWLYISIPKTFFPEQDTGVLMGGIQADQSISFQAMRG 519

Query: 597 NLES 600
            L+ 
Sbjct: 520 KLQD 523



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 94/217 (43%), Gaps = 6/217 (2%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            + +      + +     + + +T++   ST++ +     ++ +E +   ++ +I +   
Sbjct: 745 TISFNLPTGKSLSDASAAIDRAMTQLGVPSTVRGSFAGTAQVFQETMNSQVILIIAAIAT 804

Query: 680 MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + I + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG    + +
Sbjct: 805 VYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLIGIVKKNAI 864

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
           ++ D   +  +     ++ ++ I ++        + T++AA    LP+ + GG    +  
Sbjct: 865 MMVDFALEAQRHGN--LTPQEAIFQACLLRFRPIMMTTLAALFGALPLVLSGGDGSELRQ 922

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              I +  G+V++   +++    + LF    R + +R
Sbjct: 923 PLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSR 959



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 72/217 (33%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           ++R   +         +   + +  + I     +Q  +   P I   L       VI  A
Sbjct: 226 MIRKLPEANIIQTVDSIRARLPELQSTIPAAIDLQIAQDRSPTIRASLEEVEQTLVISVA 285

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +     + + +  T     L G   N  ++ A+    G+ V+D 
Sbjct: 286 LVILVVFLFLRSGRATIIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIATGFVVDDA 345

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMAVWGGSVI 794
           +VV + +    +     +       +   E     +  S++        L M    G ++
Sbjct: 346 IVVLENI---ARHLEAGMKPLQAALQGTREVGFTVLSMSLSLVAVFLPLLLMGGLPGRLL 402

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             FA+ ++  I ++   S+    P++       +K  
Sbjct: 403 REFAVTLSVAIGISLLVSL-TLTPMMCGWMLKASKPR 438


>gi|261838150|gb|ACX97916.1| cytoplasmic pump protein of the hefABC efflux system [Helicobacter
           pylori 51]
          Length = 1026

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/568 (11%), Positives = 157/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +    +     +   +       +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKKTIKPMLQKIDGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILVNANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++V+ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISVMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVVSKLGMEFM 540



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ +  + + + + +   ++        + T+ L  +       L     ++ ++  ++ 
Sbjct: 854  LIALATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLIL 913

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+
Sbjct: 914  LIGMVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLAL 970

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 971  ASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1017



 Score = 39.7 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SVMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|148262609|ref|YP_001229315.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
 gi|146396109|gb|ABQ24742.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
          Length = 1026

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/514 (11%), Positives = 144/514 (28%), Gaps = 39/514 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GL       +    +  +P                         
Sbjct: 9   RRPVLATVVSLLILVLGL-----RSMGVLKVREYPETQNAVVT---------VATTYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   V GF+    +   +          +  Q Q+ I      +        ++   +  
Sbjct: 55  DPALVAGFITTPLENSIAQANGIDYLTSASIQSQSTIQAYLRLNYDPNKALTEINTKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  D ++ ++     + I  +        + ++  + +  +IR    ++   E   
Sbjct: 115 VLNQLPKDTQQPVITVAIGEAIDSMYIGFYSKVLPTN--KITDYLIRVVQPKLQAVEGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    L    DP ++     T   +S      +          + +        
Sbjct: 173 TAEVLGQRRFALRAWLDPVKMAAFGVTAGDVSTALANNDFISAVGRTKGQMVTVDLIATT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                     +     ++                ++           
Sbjct: 233 NL--------------------HSVDEFRNMVLKSANGAIVRLGNVASVTLGSENYDTAV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    I+    +  ++           +          S   
Sbjct: 273 GFDGESAVYIGIKVAPTANLLTVIDGVRKVFPVVEQQLPEGLSGRIVYDATKYVNSSIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V +V+F+++   +  ++   ++ L++I    ++ L+G T+ L ++  +V
Sbjct: 333 VITTLLEALAIVTLVIFLVLGSLRSVIIPTIAMPLSLIGAFFIMLLMGYTINLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +        +   +   G       I   ++  +   V + F G
Sbjct: 393 LAIGLVVDDAIIVVENVHRHMENGMAPMEASIQGARELAGPIIAISVVLVAVYVPIGFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMI 512
              G     FA T+  ++ +S   A+++   M  
Sbjct: 453 GLTGALFTEFAYTLAGAVAVSAVIALTLSPMMCS 486



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 73/188 (38%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           +V  +V++++ E +    + +          E+I   +  + I  + + + +        
Sbjct: 301 KVFPVVEQQLPEGLSGRIVYDATKYVNSSIHEVITTLLEALAIVTLVIFLVLG---SLRS 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +     + L +        L G   NL  + A++  IG  V+D ++V + +    +   
Sbjct: 358 VIIPTIAMPLSLIGAFFIMLLMGYTINLLTLLALVLAIGLVVDDAIIVVENVH---RHME 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             ++  +   +   E  G  +  S+      +P+   G   G++   FA  +A  + V+A
Sbjct: 415 NGMAPMEASIQGARELAGPIIAISVVLVAVYVPIGFMGGLTGALFTEFAYTLAGAVAVSA 474

Query: 810 SSSIFIAA 817
             ++ ++ 
Sbjct: 475 VIALTLSP 482



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 60/156 (38%), Gaps = 9/156 (5%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLI 730
              + I + + +   F+ +      + ++ + I   + F +L   G   N+     ++TLI
Sbjct: 855  FFALIIIFLSLAALFESFRDPFTVLISVPMSICGAMIFISLGVGGASLNIYTEVGLVTLI 914

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-VW 789
            G      +++        +        R+ ++ +    L   + T+ A  + VLP+    
Sbjct: 915  GLISKHGILIVQFANDLQRE---GKGKREAVELAAAIRLRPILMTTAAMVLGVLPLVTAS 971

Query: 790  GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            G   +   +  + +  GI +    ++F+   + + +
Sbjct: 972  GAGAVGRFNMGLVIMTGIAIGTLFTLFVVPAMYMLL 1007


>gi|107100870|ref|ZP_01364788.1| hypothetical protein PaerPA_01001900 [Pseudomonas aeruginosa PACS2]
          Length = 1036

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 144/492 (29%), Gaps = 24/492 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            + +L     + +   +    +   S +        S       +TL F+  +  +  A 
Sbjct: 51  INALLPGGSPETMASSVATPLEVQFSAIPGITEMTSSSALGTTTLTLQFSLDKSIDVAAQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L VD              S ++    ++  +   IE S         Q
Sbjct: 111 EVQAAINAAAGRLPVDMPNLPTWRKVNPADSPIMI-LRVNSEMMPLIELSDYAETILARQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       Q     +    +  +  P +L     T A +                     
Sbjct: 170 LSQVNGVGQIFVVGQQRPAIRIQAQPEKLAAYQLTLADLRQSLQS--------------- 214

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +          ++   AN          D+          F      I   
Sbjct: 215 -----ASVNLAKGALYGEGRVSTLAANDQLFNASDYDDLVVAYRQGAPVFLKDVARIVSA 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             +   +   +   T +        LR          V      
Sbjct: 270 PEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAALPRLREMLPATIEVDVLNDRTR 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +  GLV++V+ + +      L+    + +++  + A + +LG TL 
Sbjct: 330 TIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVATVLAVSLSASFAAMYVLGFTLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  +++ +G  VD  I+V E I        S   +   G +    T+   + + + A
Sbjct: 390 NLTLVALIIAVGFIVDDAIVVVENIHRHLEAGASKVEAALKGAAEIGFTVISISFSLIAA 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   R FA+++ ++ILIS+  ++++   +    +   +         + 
Sbjct: 450 FIPLLFMGGIVGRLFREFAVSVTVAILISVLASLTLAPMLASRFMPALRHADAPRKGFAE 509

Query: 531 FFLIPDCIAIQF 542
           +        +++
Sbjct: 510 WLTGGYERGLRW 521



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 95/244 (38%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L  V   + + +   +           LV L+    + V     ++   
Sbjct: 249 VVAYRQGAPVFLKDVARIVSAPEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAAL 308

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ E++P +   +      +  R  + +  + ++++   +++ + +  +   A   + T
Sbjct: 309 PRLREMLPATIEVDVLNDRTRTIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVAT 368

Query: 700 -LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L + ++ +     + G   N   + A++  +G+ V+D +VV + +    +      S  
Sbjct: 369 VLAVSLSASFAAMYVLGFTLNNLTLVALIIAVGFIVDDAIVVVENIH---RHLEAGASKV 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S +   + +P+   GG V      FA+ +   I+++  +S+ +
Sbjct: 426 EAALKGAAEIGFTVISISFSLIAAFIPLLFMGGIVGRLFREFAVSVTVAILISVLASLTL 485

Query: 816 AAPI 819
           A  +
Sbjct: 486 APML 489



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 89/235 (37%), Gaps = 6/235 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                    Q         V L +     V+    ++ V++   EI   STI        +
Sbjct: 790  AAPRSGPLQINHNGMFPAVNLSFNLAAGVSLGEAVQAVQRAQEEIGMPSTIIGVFQGAAQ 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
              +  +    + ++ + IA+ I + + ++ +   L  ++TL       +     +G +F+
Sbjct: 850  AFQSSLASQPLLILAALIAVYIILGVLYESFVHPLTILSTLPSAGIGAVFLLWAWGQDFS 909

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + A+  ++ LIG    + +++ D     +      +S    I ++        + T++AA
Sbjct: 910  IMALIGIVLLIGIVKKNGILMVD--FAIVAQREQGMSAEQAIYQACLTRFRPIMMTTLAA 967

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  +P+ +    G  +     I +  G++V+   ++F    + L +     +  
Sbjct: 968  LLGAIPLMIGFGTGSELRQPLGIAVVGGLLVSQVLTLFSTPVVYLALERLFHRRG 1022


>gi|254234535|ref|ZP_04927858.1| hypothetical protein PACG_00395 [Pseudomonas aeruginosa C3719]
 gi|126166466|gb|EAZ51977.1| hypothetical protein PACG_00395 [Pseudomonas aeruginosa C3719]
          Length = 1036

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 144/492 (29%), Gaps = 24/492 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            + +L     + +   +    +   S +        S       +TL F+  +  +  A 
Sbjct: 51  INALLPGGSPETMASSVATPLEVQFSAIPGITEMTSSSALGTTTLTLQFSLDKSIDVAAQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L VD              S ++    ++  +   IE S         Q
Sbjct: 111 EVQAAINAAAGRLPVDMPNLPTWRKVNPADSPIMI-LRVNSEMMPLIELSDYAETILARQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       Q     +    +  +  P +L     T A +                     
Sbjct: 170 LSQVNGVGQIFVVGQQRPAIRIQAQPEKLAAYQLTLADLRQSLQS--------------- 214

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +          ++   AN          D+          F      I   
Sbjct: 215 -----ASVNLAKGALYGEGRVSTLAANDQLFNASDYDDLVVAYRQGAPVFLKDVARIVSA 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             +   +   +   T +        LR          V      
Sbjct: 270 PEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAALPRLREMLPATIEVDVLNDRTR 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +  GLV++V+ + +      L+    + +++  + A + +LG TL 
Sbjct: 330 TIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVATVLAVSLSASFAAMYVLGFTLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  +++ +G  VD  I+V E I        S   +   G +    T+   + + + A
Sbjct: 390 NLTLVALIIAVGFIVDDAIVVVENIHRHLEAGASKVEAALKGAAEIGFTVISISFSLIAA 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   R FA+++ ++ILIS+  ++++   +    +   +         + 
Sbjct: 450 FIPLLFMGGIVGRLFREFAVSVTVAILISVLASLTLAPMLASRFMPALRHADAPRKGFAE 509

Query: 531 FFLIPDCIAIQF 542
           +        +++
Sbjct: 510 WLTGGYERGLRW 521



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 95/244 (38%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L  V   + + +   +           LV L+    + V     ++   
Sbjct: 249 VVAYRQGAPVFLKDVARIVSAPEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAAL 308

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ E++P +   +      +  R  + +  + ++++   +++ + +  +   A   + T
Sbjct: 309 PRLREMLPATIEVDVLNDRTRTIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVAT 368

Query: 700 -LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L + ++ +     + G   N   + A++  +G+ V+D +VV + +    +      S  
Sbjct: 369 VLAVSLSASFAAMYVLGFTLNNLTLVALIIAVGFIVDDAIVVVENIH---RHLEAGASKV 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S +   + +P+   GG V      FA+ +   I+++  +S+ +
Sbjct: 426 EAALKGAAEIGFTVISISFSLIAAFIPLLFMGGIVGRLFREFAVSVTVAILISVLASLTL 485

Query: 816 AAPI 819
           A  +
Sbjct: 486 APML 489



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 89/235 (37%), Gaps = 6/235 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                    Q         V L +     V+    ++ V++   EI   STI        +
Sbjct: 790  AAPRSGPLQINHNGMFPAVNLSFNLAAGVSLGEAVQAVQRAQEEIGMPSTIIGVFQGAAQ 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
              +  +    + ++ + IA+ I + + ++ +   L  ++TL       +     +G +F+
Sbjct: 850  AFQSSLASQPLLILAALIAVYIILGVLYESFVHPLTILSTLPSAGIGAVFLLWAWGQDFS 909

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + A+  ++ LIG    + +++ D     +      +S    I ++        + T++AA
Sbjct: 910  IMALIGIVLLIGIVKKNGILMVD--FAIVAQREQGMSAEQAIYQACLTRFRPIMMTTLAA 967

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  +P+ +    G  +     I +  G++V+   ++F    + L +     +  
Sbjct: 968  LLGAIPLMIGFGTGSELRQPLGIAVVGGLLVSQVLTLFSTPVVYLALERLFHRRG 1022


>gi|323702057|ref|ZP_08113725.1| protein-export membrane protein SecD [Desulfotomaculum nigrificans
           DSM 574]
 gi|323532939|gb|EGB22810.1| protein-export membrane protein SecD [Desulfotomaculum nigrificans
           DSM 574]
          Length = 410

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 33/176 (18%), Positives = 83/176 (47%), Gaps = 4/176 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + + K +   I+  IA+ ++++  ++    L A   L++     L  +A   + 
Sbjct: 236 GPSLGADSLNKSVKAGIVGLIAIALFMFGYYRLP-GLVADFALVVYALIVLAIYAAMHVV 294

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +AA +  +G +V+  V++++R+++ ++   T  + R  ID          + +++
Sbjct: 295 LTLPGIAAFILSMGMAVDANVIIFERLKEELR---TGKTLRSAIDAGFKRAFVAILDSNV 351

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              ++   +  +G   I SFA+ ++ GI+ +  ++I     +L    +   KN ++
Sbjct: 352 TTLLAAAVLFYFGSGPIKSFAVALSVGILTSMFTAISFTRWMLHNTANTGIKNTKL 407



 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 133/397 (33%), Positives = 218/397 (54%), Gaps = 26/397 (6%)

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           V      V            L       +++        +V    ++Q  E+I +R++  
Sbjct: 24  VQPVFPNVKWLPLTKGIPLGLDLQGGVHVTLEAKDTPQAKVNDDTMKQLKEVIERRVNAF 83

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
           G+SE  IQ+ G +R++++L G +DP +  + +  TA + F                    
Sbjct: 84  GVSEPIIQQEGKNRLIVELAGIKDPDQAVRDIVKTAFLEFKTQD---------------- 127

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                      K  ++G  L  A    DP T +  VD+ F+  G ++F E T  N+GKP+
Sbjct: 128 ----------GKTILTGADLKNAVEGKDPTTGQIEVDLEFNSEGTKKFAEATTANVGKPI 177

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A++LDG+VL  P + + I  GKA+I+G   +  A  +A +L++G+LP+K +++E+R VG 
Sbjct: 178 AIILDGKVLQNPTVQEPITGGKARITGYHDLNEAHTIAVLLKSGALPLKTDVIEKRTVGP 237

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG+DS+ K   A + GL+ I LFM   Y   GLVADF++ +  ++ LA+ + +   LTL
Sbjct: 238 SLGADSLNKSVKAGIVGLIAIALFMFGYYRLPGLVADFALVVYALIVLAIYAAMHVVLTL 297

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IA  +L +G+AVD+N+++ ER++EE R  +++  ++D GF RA+  I DSN+T L+A 
Sbjct: 298 PGIAAFILSMGMAVDANVIIFERLKEELRTGKTLRSAIDAGFKRAFVAILDSNVTTLLAA 357

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            VLF+FG G ++ FA+ + + IL SMFTAIS  R M+
Sbjct: 358 AVLFYFGSGPIKSFAVALSVGILTSMFTAISFTRWML 394



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/390 (11%), Positives = 113/390 (28%), Gaps = 26/390 (6%)

Query: 27  LPQSMLDRFPSAMP-KNRISLGLDLRGGSHLVLEV-DED--DFVNGFLQMYSDELRSFLK 82
                +      +P    I LGLDL+GG H+ LE  D       +  ++   + +   + 
Sbjct: 22  FSVQPVFPNVKWLPLTKGIPLGLDLQGGVHVTLEAKDTPQAKVNDDTMKQLKEVIERRVN 81

Query: 83  KEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
             G+    ++Q   N++ +  A  +  +     V   ++    +         ++T  + 
Sbjct: 82  AFGVSEPIIQQEGKNRLIVELAGIKDPDQA---VRDIVKTAFLEFKTQ-DGKTILTGADL 137

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
           + ++        Q+       S    +            I  +   ++L     ++  + 
Sbjct: 138 KNAVEGKDPTTGQIEVDLEFNSEGTKKFAEATTANVGKPIAIILDGKVLQNPTVQEPITG 197

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
            +  +     ++      +        G   L+     +  V       G  L   + N 
Sbjct: 198 GKARITGYHDLNEA----HTIAVLLKSGALPLKTDVIEKRTV-------GPSLGADSLNK 246

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
             K     +      M           +    +  ++   +  A  +   +P   A I  
Sbjct: 247 SVKAGIVGLIAIALFMFGYYRLPGLVADFALVVYALIVLAIYAAMHVVLTLPGIAAFILS 306

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
                 A ++        L     +    + G      +I       +    +      +
Sbjct: 307 MGMAVDANVIIFERLKEELRTGKTLRSAIDAGFKRAFVAILDSNVTTLLAAAV------L 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGAT 411
            Y   G +  F++ L+V +  ++ + +  T
Sbjct: 361 FYFGSGPIKSFAVALSVGILTSMFTAISFT 390


>gi|110678662|ref|YP_681669.1| acriflavin resistance protein D [Roseobacter denitrificans OCh 114]
 gi|109454778|gb|ABG30983.1| acriflavin resistance protein D [Roseobacter denitrificans OCh 114]
          Length = 1054

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/560 (13%), Positives = 160/560 (28%), Gaps = 35/560 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++    M    G +        +  +   P       +                  
Sbjct: 10  RPIAVMAAVIMAVLFGTIAV-----SRIPIQLAPDVRKPIVV---------IETQWPGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +E    L+   I     R  + +ITL F            V+  L  V
Sbjct: 56  PSEIEREIVNPQEEALRGLEGLDIMTSRSRTGEAEITLEFGVGTDMVQSLLLVSNRLDRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
               +   +  L  +  +      +     +            +     D+I   E    
Sbjct: 116 GDYPDEASEPTLDTSGADDSPIAWILLTAQEGNTREMATYGDFVEDVIQDRIERIEGVSA 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  +L    DP RL +   T  ++       N S           R     +  
Sbjct: 176 VNVFGGVTRELQVVVDPRRLSRFDLTVPEVVRVLRDENISLSAGDVEEGKRRYVVRAEGN 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +     I  + L                       G+ R       ++            
Sbjct: 236 LNTVEAIKSVVLRSDIG----------------TGGSGRVRVADVADVSFSFEEANSRLR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLR--AGSLPIKLNIVEERNVGADLGSDS 360
                        +   +   T+     + A L     +                 G+  
Sbjct: 280 FRGEPGLAFNIVREPGANVIETMAEVKEVLAELSAGPVAEVGLNMRQAYDETVYINGAID 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           +      I   L   VL   +   +  LV   +I ++++ T   ++  G TL + S+AGI
Sbjct: 340 LVTQNIWIGGALAAAVLMAFLRSPRATLVVSLAIPVSIVSTFVAMAATGRTLNVISLAGI 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +G+ VD+ I+V E I     + +S   +  +G  + +  I  S +T ++  V +   
Sbjct: 400 AFAVGMIVDAAIVVLENIYRLREEGKSRREAAYLGAKQVWGAILVSALTTVLVFVPILIM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R  A+ + +S+L+S+  A++++ A+   ++     K ++I  L         
Sbjct: 460 QLEAGQLFRDIAVAISVSVLLSLVVAVTVIPALSSKLLSKGDQKKVNIWGLDHLARGFHG 519

Query: 538 IAIQFMRARFWGVGISILFS 557
           + + ++R       + +   
Sbjct: 520 MVMSYVRLTVRFRALGLFMV 539



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 85/261 (32%), Gaps = 13/261 (4%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R + V      +            + G    G +++  +A+         S L     
Sbjct: 224 GKRRYVVRAEGNLNTVEAIKSVVLRSDIGTGGSGRVRVADVADVSFSFEEANSRLRFRGE 283

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
             ++F         ++        +  +  + E+    + E+         E V    + 
Sbjct: 284 PGLAFNIVREPGANVI-----ETMAEVKEVLAELSAGPVAEVGLNMRQAYDETVYINGAI 338

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           +L+ + I   I  A+A  + +         L     + + I  T    A  G   N+ ++
Sbjct: 339 DLVTQNIW--IGGALAAAVLMAFLRSPRATLVVSLAIPVSIVSTFVAMAATGRTLNVISL 396

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A +   +G  V+  +VV + +    +L     S R+       +  G  + +++   +  
Sbjct: 397 AGIAFAVGMIVDAAIVVLENI---YRLREEGKSRREAAYLGAKQVWGAILVSALTTVLVF 453

Query: 784 LPMAVW---GGSVIGSFAIPM 801
           +P+ +     G +    A+ +
Sbjct: 454 VPILIMQLEAGQLFRDIAVAI 474



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 88/246 (35%), Gaps = 10/246 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                G   +   + + + +S +   + +    +I  ++        VR         A  
Sbjct: 780  TQDIGNYPVVTPSGQIIPVSALADVVVTAGPTEIRHRDRLRTVTLEVRPSDALALEEAVE 839

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             + E V   + E    + ++ +         +      + + ++ + + + + I F+ + 
Sbjct: 840  LLQEEVIDVLEESGLPNGVRMSVSGTADQLSQTWDAIQINLAVALVIVFLVMAILFESFV 899

Query: 692  FALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              L  + ++ +     +G  AL         +   +   + L+G  VN+ +++    +  
Sbjct: 900  LPLVIMISVPVAAAGGVGGLALLNTFQTQPLDTLTLLGFIILVGIVVNNAILIVH--QTL 957

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
              L    +S  D I+++    +     +++ +   +LP+ V+   G  +       +  G
Sbjct: 958  YHLRDEGMSPVDAIEEATRNRIRPIFMSTLTSVCGMLPLVVFPGEGSELYRGLGAVVVGG 1017

Query: 805  IVVAAS 810
            + ++A 
Sbjct: 1018 LSMSAF 1023


>gi|27379430|ref|NP_770959.1| multidrag resistance protein [Bradyrhizobium japonicum USDA 110]
 gi|27352581|dbj|BAC49584.1| bll4319 [Bradyrhizobium japonicum USDA 110]
          Length = 1041

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 77/577 (13%), Positives = 172/577 (29%), Gaps = 47/577 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFP----SAMPKNRISLGLDLRGGSHLV 57
           R     +++  MI  +GL       +    + ++P    + +       G D        
Sbjct: 14  RRPVLAIVVSLMILVLGL-----KSMTSLPILQYPRTQNAIVTVTTTYYGAD-------- 60

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   V GF+    +   +          + +   + IT++   +        ++  
Sbjct: 61  -----PAVVAGFITTPLENAIAQANGIDYMTSTSQPSTSTITVNLRLNFDSGKALTEINT 115

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V ++L    ++ +L     + I  +    + D  +    + +  +IR    ++   
Sbjct: 116 KVNSVLNQLPSGVQQPVLTVKVGQTIDAMYLGFSSD--VLAPNQITDYLIRVVQPKLQAV 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          L    DP +L     T + +S      +                 
Sbjct: 174 SGVQTAELLGNKTFALRAWLDPIKLAAYGLTASDVSTALSSNDYIA------------GL 221

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G       +V ++      +   F          +   + GA         N+       
Sbjct: 222 GTTKGQMVQVNLTAATNLKSLQEFRD--------LVVKQAGASNVKLSDVANVTLGSEDY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +    I+    +   ++A       + +   +      
Sbjct: 274 DSSVGFNGKRAVYIGIQVAPNANLLDVIKGVRAVYPDIKAQQPEGLNSEIIYDSTDFVNS 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V +V+F+ +   +  L+   +I L+++ T  +L  LG ++ L ++
Sbjct: 334 SIDEVIHTLLEALLIVTVVVFLFLGSWRSVLIPVIAIPLSLVGTFTMLLALGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +     +      +  M        I    I  +   V +
Sbjct: 394 LALVLAIGLVVDDAIIVVENVNRHLAEGTKPLQAAIMAARELAGPIVAMTIVLIAVYVPI 453

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F G   G     FA T+  ++ +S   A+++      FI++        +N     F+ 
Sbjct: 454 GFQGGLTGALFTEFAFTLAGAVAVSAVIALTLTPMCCAFILKPANTGKPTLNDRIVGFID 513

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
               A+Q    R     ++ +        L    + +
Sbjct: 514 ARMDALQHRYRRLLAGSLTTIPVTVVFAALVLSSIYW 550



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 69/197 (35%), Gaps = 13/197 (6%)

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYF 692
            E +               T   G +  + +              ++I++ +      +  
Sbjct: 819  EALATLKEIADRTLPKGYTIDYGGQSRQFIQESSGFAATFGFALIIIFLALSAQFESFRD 878

Query: 693  ALGAITTLILDITKTLGFFALFGI---EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             L  + ++ + I   L  F + GI     N+     ++TL+G      +++ +   +   
Sbjct: 879  PLIILVSVPMSIAGAL-IFIMLGIKGASLNIYTEVGLVTLMGLISKHGILIVEFANELQH 937

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                  S RD + ++    L   + T+ A  I V+P+      G +   +  + +A G+ 
Sbjct: 938  A---GRSKRDAVIEATAIRLRPILMTTAAMVIGVMPLITATGAGAASRFNMGLVIASGLS 994

Query: 807  VAASSSIFIAAPILLFI 823
            +    ++F+     + +
Sbjct: 995  IGTLFTLFVVPAFYILL 1011



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 73/188 (38%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            V   +K +  E +    I ++         E+I   +  ++I  + + +++     W  
Sbjct: 306 AVYPDIKAQQPEGLNSEIIYDSTDFVNSSIDEVIHTLLEALLIVTVVVFLFLG---SWRS 362

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  +  + L +  T       G   NL  + A++  IG  V+D ++V + + +++   T
Sbjct: 363 VLIPVIAIPLSLVGTFTMLLALGFSINLLTLLALVLAIGLVVDDAIIVVENVNRHLAEGT 422

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                      +  E  G  V  ++      +P+   G   G++   FA  +A  + V+A
Sbjct: 423 K---PLQAAIMAARELAGPIVAMTIVLIAVYVPIGFQGGLTGALFTEFAFTLAGAVAVSA 479

Query: 810 SSSIFIAA 817
             ++ +  
Sbjct: 480 VIALTLTP 487


>gi|330992754|ref|ZP_08316698.1| Multidrug resistance protein mdtB [Gluconacetobacter sp. SXCC-1]
 gi|329760232|gb|EGG76732.1| Multidrug resistance protein mdtB [Gluconacetobacter sp. SXCC-1]
          Length = 1054

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/522 (11%), Positives = 141/522 (27%), Gaps = 36/522 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +   GL+           +   P       +                 
Sbjct: 10  KRPVATTLLMVALMLAGLI-----GYRFLPISALPEVDYPTIV---------VRTFYPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +              + ITL F  S   +    +V   +  
Sbjct: 56  SADVMMTSVTAPLEGQMGEMAGLDQMTSQSSAGASVITLRFGLSISLDVAEQEVQEAINA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            NS L        + +      + ++    +        E    +  +   +I       
Sbjct: 116 ANSLLPSALPAPPIYSKVNPADTPIMI-LGVTSTTLSLPEVQDYVTTRLQQKISEISGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S           +  +   L      +       N +     F  + L  +     
Sbjct: 175 EVSLSGGNKKAYRVRVNVPKATALGIDLDTLRTTIGNVNVNSPTGSFNGKKLNRTIHIDS 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    ++    +                   + +             + +         
Sbjct: 235 QISSTDQLLNQVVG------------------WSDTSQGPVRLRDIATVVEGAEDTQLAG 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T+         L+                     S + 
Sbjct: 277 WSNQTPAIILNIRRQPSANIINTVNAIKATLPSLQQDMPGGVTITPLTDRTTTIRASVAD 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   LV+ V+F+ +      ++   S+ L++I TLA++ ++G +L   S+  + 
Sbjct: 337 VEFELGLALALVVGVIFVFLHDPSATVIPALSVPLSIIGTLAVMDMMGFSLDNLSLMSLT 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I++ E I       +    +   G      TI    I+ +   + L F G
Sbjct: 397 ISTGFVVDDAIVMIENIARYIEMGRDRMDAALEGAGEIGFTIVSLTISLIAVLIPLLFMG 456

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
              G     FA+T+ ++I++S   ++++V  M   +++ K  
Sbjct: 457 DVIGRLFYEFAVTLAVTIILSAVVSLTLVPMMCARLLKDKAH 498



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/240 (10%), Positives = 78/240 (32%), Gaps = 10/240 (4%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           ++       +R     ++  + +       +   + L  +   S      +  +K  +  
Sbjct: 250 SDTSQGPVRLRDIATVVEGAEDTQLAGWSNQTPAIILNIRRQPSANIINTVNAIKATLPS 309

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYI-WIRFKWYFALGAITTL 700
           +        T       +  +          + ++   ++  I          +    ++
Sbjct: 310 LQQDMPGGVTITPLTDRTTTIRASVADVEFELGLALALVVGVIFVFLHDPSATVIPALSV 369

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L I  TL    + G   +  ++ ++    G+ V+D +V+ + +    +         D 
Sbjct: 370 PLSIIGTLAVMDMMGFSLDNLSLMSLTISTGFVVDDAIVMIENI---ARYIEMGRDRMDA 426

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
             +   E     V  +++    ++P+   G  +      FA+ +A  I+++A  S+ +  
Sbjct: 427 ALEGAGEIGFTIVSLTISLIAVLIPLLFMGDVIGRLFYEFAVTLAVTIILSAVVSLTLVP 486


>gi|113866610|ref|YP_725099.1| cation/multidrug efflux pump [Ralstonia eutropha H16]
 gi|113525386|emb|CAJ91731.1| Cation/multidrug efflux pump [Ralstonia eutropha H16]
          Length = 1099

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/635 (10%), Positives = 164/635 (25%), Gaps = 49/635 (7%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +     +        S      ++TL F  SR  +  A 
Sbjct: 47  VSASLPGASPETMAATVATPLERALGTIAGVTEITSSSSLGSTRVTLQFDLSRNIDGAAR 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    + L      N          + ++    +        +           +
Sbjct: 107 DVQAAINASRATLPTSLPNNPTYRKVNPADAPIMI-IALTSPTMTRGQLYDAASTILAQK 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   Q       L  +  E +P+ L     +   +       N ++          
Sbjct: 166 LSQVDGVGQVTIGGASLPAVRVELNPTALNNYGISLEDVRNTISATNANRPLGTLENAAS 225

Query: 234 RDSD--------------------------------------------GNQYLVEDKVEI 249
                                                           G    V + V +
Sbjct: 226 NWQVYANDQAMKAEDYMPLIIRYATPGTFSSTSAGALIASTANAAASGGVSTKVVNGVTV 285

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           + +  +  T              S     A         N+   +  + +          
Sbjct: 286 TTLTTSSGTTTITSGATGGTSATSGPNSFAVPVRLRDVANVVDSVQDIRNAGSANGKPSV 345

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             + +     +   T++    +   L+          V          S    + T  I 
Sbjct: 346 LLVLNRSPGANIIETVDRVNEMLPQLQKMIPAAISMDVMMDRTPTIRASLREVENTLMIS 405

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV++V+F+ +   +  L+   ++ +++I T +++ L G +L   S+  + +  G  VD
Sbjct: 406 VALVIMVVFVFLRNVRATLIPSVAVPVSLIGTFSVMYLAGFSLNNLSLMALTIATGFVVD 465

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVR 486
             I+V E I     +      +   G      T+   +++ +   + L   G   G   +
Sbjct: 466 DAIVVLENISRHIEEGMKPLAAALRGAREVGFTVLSMSLSLIAVFIPLLMMGGIVGRLFQ 525

Query: 487 GFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
            FAIT+ ++IL+S+  +++    M    +   +  K       +               +
Sbjct: 526 EFAITLSVAILVSLVVSLTTTPMMCARMLRPPEPEKQGRFFRATERMFQWLHDGYARSLS 585

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
               +   +   + +   L  +            Q        +      S        D
Sbjct: 586 TALRLSPLVWLVLIATIALNVYLYVIVPKGFFPQQDTGRLIGFIRADQATSFQAMRGKLD 645

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +    +   +    +  G      ++   +K 
Sbjct: 646 NFIKIVQSDPAVVNVTGFTGGSQRNTGQMFVTLKP 680



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 81/250 (32%), Gaps = 12/250 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            GG       N       +R     +                 V L             +
Sbjct: 302 TGGTSATSGPNSFAVPVRLRDVANVVDSVQDIRNAGSANGKPSVLLVLNRSPGANIIETV 361

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKW 690
           + V + + ++  +     +  V    +  +          + + ++ + M++++++R   
Sbjct: 362 DRVNEMLPQLQKMIPAAISMDVMMDRTPTIRASLREVENTLMISVALVIMVVFVFLR-NV 420

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     + + +  T     L G   N  ++ A+    G+ V+D +VV + +    + 
Sbjct: 421 RATLIPSVAVPVSLIGTFSVMYLAGFSLNNLSLMALTIATGFVVDDAIVVLENI---SRH 477

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               +       +   E     +  S++     +P+ + GG V      FAI ++  I+V
Sbjct: 478 IEEGMKPLAAALRGAREVGFTVLSMSLSLIAVFIPLLMMGGIVGRLFQEFAITLSVAILV 537

Query: 808 AASSSIFIAA 817
           +   S+    
Sbjct: 538 SLVVSLTTTP 547



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 92/216 (42%), Gaps = 6/216 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +  + ++  + + +++  I    T++     G K  ++ ++   + ++ + I 
Sbjct: 868  TISFNLAEGTSLSQATDAITREMARIGVPETLRANFQGGAKAFQDSLKSQPILILAALIT 927

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + + ++ +   L  ++TL       L        +F++ A+  V+ LIG    + +
Sbjct: 928  IYIVLGVLYESYVHPLTILSTLPSAGVGALLALLASKTDFSIIALIGVILLIGIVKKNAI 987

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D            +S RD I ++        + T+MAA +  +P+A+    G  +  
Sbjct: 988  MMID--FAIDAERRDGLSPRDAIYRACLLRFRPILMTTMAALLGAVPLAIGRGDGAELRA 1045

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               I +  G+VV+   +++    + L +  WR K  
Sbjct: 1046 PLGISIVGGLVVSQLLTLYTTPVVYLTLDRWRLKVK 1081


>gi|296126933|ref|YP_003634185.1| acriflavin resistance protein [Brachyspira murdochii DSM 12563]
 gi|296018749|gb|ADG71986.1| acriflavin resistance protein [Brachyspira murdochii DSM 12563]
          Length = 1038

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/541 (13%), Positives = 165/541 (30%), Gaps = 52/541 (9%)

Query: 1   MRNNPWLVI---LYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHL 56
           M+    L++       +  + + I     + +  ++  P   +P   I    D  G    
Sbjct: 1   MKKFITLIVSRPTTVFVTLVSMFIIGFISISRLNINYLPDMEVPIISIKTTYDNAG---- 56

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                  + V   +    +   S +          ++ ++ + + F      +  +D + 
Sbjct: 57  ------PEEVEKSVTRVVENAVSSVNNVKTIKSKSKESESNVEIEFNWGTDLQTASDDIR 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + S L  +     +   +     I+         +S   +    +  Q + ++  
Sbjct: 111 EAIDMIRSSLPDEADNPNISKFSSDATPIMNIAFFGTDNLSSLYDL---VDSQILTRLEQ 167

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   Q      +   +  + D +RL         +     L N +  G        + +
Sbjct: 168 VDGVAQTEIRGGLKKIIRVDIDLNRLNAYSIDINDIVKTLALENQNVAGGETYEGVYKYN 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  +   +I  + +      +  +           E  +       +         
Sbjct: 228 IRTTGEFKTVKDIEDVVIMLKDEIYPVRVRDIAYVHEDYEDDSEIVRINGQK-------- 279

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                            +   +  GN    +  +   +            +   +     
Sbjct: 280 -------------SLTIAVTKESGGNIIQISRDVEKRLNEIMLPSGIYYQILFNSSDTIK 326

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T    A   +IVL + +   K   +   SI ++VI T  L+     T+ + S
Sbjct: 327 NSIRNVLNTVWQGALFAVIVLMIYLWDIKSVFIISISIPVSVISTFILMYFFDITINVIS 386

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN-----------QSVFCSLDMGFSRAYSTIFD 465
           ++G+VLG+G+ VD++I+V E I   N               S F +  +G S     I  
Sbjct: 387 LSGLVLGVGMMVDNSIVVLENIFYYNDYYSKYVHDKRSSIISNFKASILGASEVSIAITA 446

Query: 466 SNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           S +T++   +   F     G       +T+ +S++ S+  A++IV  +   + +      
Sbjct: 447 STLTSVCVFLPFLFVQGEMGQMFSDLCMTVSISLISSLLVALTIVPLLASRLHKGNSKSR 506

Query: 523 I 523
           I
Sbjct: 507 I 507



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 83/216 (38%), Gaps = 6/216 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
             +  +              ++E ++K++  I   S          +  +E   + IV +I
Sbjct: 817  NDKRIIEINASSFGRPINEIIEDIRKELNNIYIPSGFSVNFSGDYEDMQEAFIQLIVSLI 876

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ + +   I  +F+ +         +   +   L F  L G   N+ +   ++ L+G  
Sbjct: 877  MALVFVYAIIAGQFESYITPFVISLAVPFALFGALIFLYLGGQTLNVYSGIGIIMLVGIV 936

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +V+ D M  N  +   +IS+     +S    L   + TS+   + +LPM      G
Sbjct: 937  VNNGIVLIDYM--NKVVLEKNISWDSAALESCKRRLRPVLMTSLTTILGLLPMIFEVGNG 994

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +    AI +  G++ +   ++ I   +     + 
Sbjct: 995  SEMYRPLAIAVCGGLLFSTMFTLIIIPSVYSSFRNR 1030



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/259 (11%), Positives = 90/259 (34%), Gaps = 11/259 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + ++    +    VR      +  +   +         + +           ++   V+K
Sbjct: 243 VVIMLKDEIYPVRVRDIAYVHEDYEDDSEIVRINGQKSLTIAVTKESGGNIIQISRDVEK 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWYFALGAIT 698
           ++ EI+  S I    +     + +   + ++  +   +  A+++ +   +          
Sbjct: 303 RLNEIMLPSGIYYQILFNSSDTIKNSIRNVLNTVWQGALFAVIVLMIYLWDIKSVFIISI 362

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS---- 754
           ++ + +  T      F I  N+ +++ ++  +G  V++ +VV + +      Y+      
Sbjct: 363 SIPVSVISTFILMYFFDITINVISLSGLVLGVGMMVDNSIVVLENIFYYNDYYSKYVHDK 422

Query: 755 ----ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
               IS         +E       +++ +    LP     G +   F+  +   + ++  
Sbjct: 423 RSSIISNFKASILGASEVSIAITASTLTSVCVFLPFLFVQGEMGQMFS-DLCMTVSISLI 481

Query: 811 SSIFIAAPILLFIYDWRAK 829
           SS+ +A  I+  +     K
Sbjct: 482 SSLLVALTIVPLLASRLHK 500


>gi|224531636|ref|ZP_03672268.1| acriflavine resistance protein [Borrelia valaisiana VS116]
 gi|224511101|gb|EEF81507.1| acriflavine resistance protein [Borrelia valaisiana VS116]
          Length = 1070

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 88/596 (14%), Positives = 189/596 (31%), Gaps = 33/596 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   + V     
Sbjct: 9   KPITMLILFSLLMMISLYT-----FSRLKVDLLPGIDIP---------QISINTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K       +  +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSNSSKGNSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + IS     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMNIIINSVRPISELKRYAEEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNFELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  V++SG   +          +K     S     A         NI      + +   
Sbjct: 222 LEYLVQVSGKFKSIEEIGNVVIAYKMPDISSGINSSAIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +               +          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVMNEIEKFKLSMPKDMRLEITYDSTNFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+  +  +L + S+AG+ L
Sbjct: 342 VNSAYFGAVLAIFVIFFFLRSFRATIIIGISIPIAIVLTFCLMYFVNISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + F+ T+ +S+ +S+  AI +V  +    +        +I       +   
Sbjct: 462 ELGVYGDFFKDFSFTIVISLGVSLLVAIFLVPVLSSHYVGLYTSFQKNIKSSFIRKIDAF 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
             +I +     +   ++I+ +   I  L       G    G +      +R  D S
Sbjct: 522 FASIYYFLEFLYINLLNIVLNRKLIFGLIVFFSFIGSLLLGLLLDVTTFDRGKDNS 577



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 82/235 (34%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ + +  +     +   +   + L          T+V   V   +   VP       +
Sbjct: 798  SSIATFEKTNKEESIYRENQALTIYLNAGISPDDNLTQVTAKVIDFVNNKVPHKEGTVLK 857

Query: 656  IVGPKISRELIRKGIVGVIISAI-AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            + G       I      +II AI  +   +  +F+ +      I T+ L     +     
Sbjct: 858  VEGEYNEFSNIMNQFKIIIIMAIIVVFGIMASQFESFLKPFIIIFTIPLTTIGVVLIHFF 917

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++ A   +L L+G  VN  +V+ D       L       R+ I +S        +
Sbjct: 918  AGEKLSIFAAIGMLMLVGVVVNTGIVLVD---YTGLLIKRGFGLREAIIESCRSRFRPIL 974

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +S+ + I ++PMA     G  ++   A     G+  +   ++F    +     +
Sbjct: 975  MSSLTSIIGLIPMAFSSGSGNELLKPIAFTFIGGMTASTFLTLFFIPMLFEIFSN 1029



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 77/261 (29%), Gaps = 17/261 (6%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +      ++     +L      +             V+ +           V+  ++K
Sbjct: 259 IEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVMNEIEK 313

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               +     ++ T      I   +          + +A+ +  +    +   +    ++
Sbjct: 314 FKLSMPKDMRLEITYDSTNFIKASISTVVNSAYFGAVLAIFVIFFFLRSFRATIIIGISI 373

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + I  T        I  N+ ++A +   IG  V+  +VV D +    K           
Sbjct: 374 PIAIVLTFCLMYFVNISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLISS 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSIF 814
                 E +     ++  +     P  ++       G     F+  +   + V+   +IF
Sbjct: 431 SILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFSFTIVISLGVSLLVAIF 490

Query: 815 IAAPI---LLFIYDWRAKNAR 832
           +   +    + +Y    KN +
Sbjct: 491 LVPVLSSHYVGLYTSFQKNIK 511


>gi|283852369|ref|ZP_06369639.1| acriflavin resistance protein [Desulfovibrio sp. FW1012B]
 gi|283572217|gb|EFC20207.1| acriflavin resistance protein [Desulfovibrio sp. FW1012B]
          Length = 1028

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/580 (9%), Positives = 139/580 (23%), Gaps = 36/580 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L + +   G++           +   PS                    L   
Sbjct: 7   KRPVATTLLMAALVFFGIVS-----YFSLPISEMPSIDFPTIQ---------VSASLPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + +   +    +   + +        S       ITL F  SR  +     V  ++  
Sbjct: 53  DPETMASAVATPLERQFTSISGLQSMSSSNSLGTTTITLQFDLSRNIDGAGTDVLTYINA 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +                ++               +         +I +     
Sbjct: 113 AQGSLPSNMPSPPTFQKVNPADMPIIYIRVSSD-TMPLYRVTNYAKVYIAQRISMINGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q             + DP RL  L     +++         +            +   Q 
Sbjct: 172 QVAVYGDQTYSPRVQVDPDRLASLGIGVDEVATAFDNETVLQPTGSLYGLDKLFTIKAQG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                                    +                  +  
Sbjct: 232 QLTSAT--------------------AYNRQIIAYRNGKPVRLQDVGRTIDSTINDKNAA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +    ++    +   + A   P            +   +   
Sbjct: 272 FFDQQQGIVIAVKRAAGTNTIQLVDAIRAMMPNITATLPPSVNLEFLYDRSISIKEAIDD 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV+IV+++ +      ++A  ++   +I TL+++     ++   S   I+
Sbjct: 332 VQFTLLLSIVLVVIVVYLFLNNLPATIIAGLALPTALIGTLSIMVFFNFSIDNLSAMAII 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G  VD  I++ E I       + +  +   G  +   TI    ++ +   + + F  
Sbjct: 392 LAVGFVVDDAIVMIENIVRHTEMGKKIMQASLDGARQIGFTIISMTLSLVAVFIPIMFMA 451

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G   R          L  + +   +  ++   +        I  +     ++        
Sbjct: 452 GILGRVLNEMAVTITLCILVSG-FVTLSLTPMLCSRFLSGKISESGKFFKWIERGYEKSL 510

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
               R+    + +   I  + L     +  G        +
Sbjct: 511 HFALRWRFFVMILSVGILGLTLWLFTIVPMGFIPPTDSGI 550



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           + A   L   +  TL     F    +  +  A++  +G+ V+D +V+ + +   ++    
Sbjct: 358 IIAGLALPTALIGTLSIMVFFNFSIDNLSAMAIILAVGFVVDDAIVMIENI---VRHTEM 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
                        +     +  +++     +P+       G V+   A+ +   I+V+  
Sbjct: 415 GKKIMQASLDGARQIGFTIISMTLSLVAVFIPIMFMAGILGRVLNEMAVTITLCILVSGF 474

Query: 811 SSIFIAAPI 819
            ++ +   +
Sbjct: 475 VTLSLTPML 483



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 58/536 (10%), Positives = 147/536 (27%), Gaps = 42/536 (7%)

Query: 331  LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI-VAGLVLIVLFMIVLYGKWGLV 389
            L  ML +  L  K++   +     + G +             ++L V  + +    + +V
Sbjct: 479  LTPMLCSRFLSGKISESGKFFKWIERGYEKSLHFALRWRFFVMILSVGILGLTLWLFTIV 538

Query: 390  ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
                I            +   + +  ++   VL +G    ++  V + I        +  
Sbjct: 539  PMGFIPPTDSGIFYAFGMAEQSASFETMKDRVLKVGRIFMADPDVFKFIGVVGVGGPNTS 598

Query: 450  ----------CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
                       S+D     A   I D          +  F               ++   
Sbjct: 599  MNNVAMFPLLKSMDERKRSAQQIIDDLRPKMAQVPDLFVFMYNPPSIQIGGKQTKALYQF 658

Query: 500  MFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
               +        +       M+ +     +N   +       I I   +A+  G+  S +
Sbjct: 659  TLLSPDPTELYPVARKMTAAMRKLPQLADVNTDMQIDGPQVRIDIDRDKAKSLGISASSI 718

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLG-----------------VLANRPVDLSVVRSNL 598
             +            N          +                  V + +           
Sbjct: 719  ETALMTAYAARQVTNLYGATDTYKVIVEVQPEFQRRPDLLNKLYVKSGQVDSNGNPIMVP 778

Query: 599  ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
             +  +            +           + A    L      + ++       N   + 
Sbjct: 779  LNGLVKMTEDVGPLVVNHTGQLTSVTISFNTAGKYSLGEAVTALQDLSKKELPANISYIF 838

Query: 659  PKISRELIRK-GIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALF 714
               +         V  ++    M+IY+ +      +   +  ++ L       L    +F
Sbjct: 839  EGQATAFQESLASVPFLLFLAIMIIYLILGILYESFIHPVTILSGLPSAALGGLITLLVF 898

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G + +L     ++ LIG    + ++V D   +         +  D + +         + 
Sbjct: 899  GRQLDLYGFIGIIMLIGIVKKNSIMVIDFAIE---AEKEGKTSFDAVFEGCVVRFRPIMM 955

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            T++AA   + P+A+    GG       + +A G++++   ++++      ++ D +
Sbjct: 956  TTVAAIAGIFPIALGLGAGGDARQPLGLVVAGGLIISQVVTLYLTPVFYTYMDDLQ 1011


>gi|307152587|ref|YP_003887971.1| protein-export membrane protein SecD [Cyanothece sp. PCC 7822]
 gi|306982815|gb|ADN14696.1| protein-export membrane protein SecD [Cyanothece sp. PCC 7822]
          Length = 472

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 78/165 (47%), Gaps = 4/165 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ I+  I   I   I +L+++ + ++    + A   LI+    TL  FAL G+ 
Sbjct: 286 GATLGQDSIKSSIYAGIGGLILVLLFMALYYRLP-GIIADIALIIYAILTLAAFALLGVT 344

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      S    ++          + +++
Sbjct: 345 LTLPGIAGFILSIGMAVDANVLIFERTREEIRA---GQSLYRSVEAGFYRAFSSILDSNV 401

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +   G  ++  FA+ +A G++++  +++  +  +L+ 
Sbjct: 402 TTLIACGALFWLGSGLVKGFALTLAVGVLISMFTALTCSRTLLIL 446



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 146/520 (28%), Positives = 229/520 (44%), Gaps = 81/520 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   W+++    +    ++                       + LGLDLRGG+ L    
Sbjct: 1   MKQQRWILLFIFGLLVAAII-----------------ITKTLGLQLGLDLRGGAQLT--- 40

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                                           +    IT           +   +   + 
Sbjct: 41  --------------------------IEVQPTKEITTIT-----GEDLNGVKTVIENRIN 69

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +         ++L+ T    +I + L      Q                   +G +   
Sbjct: 70  AL------GVSESLVQTVGGNKILVQLPGVTDPQQAERI--------------LGGTAQL 109

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
             R        Q       ++  +     AK   +              ++         
Sbjct: 110 EFREQRKGTEGQFQAVYRITKALEAELEAAKKEGNNAAAKQKIAELTQSIQRNNQDI--- 166

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR--DNIGKPLAVVL 298
             + D V+++G +L  A  +     ++  V I FD+ G  +F ++T+     G+ + + L
Sbjct: 167 LKLFDSVDLTGKNLKDARPSPTRSGNQWEVAIRFDQNGGEKFAQLTKQLAGTGRSIGIFL 226

Query: 299 DGRVLTAPVINQAI-----PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           D  +++APV+           G A I+GNFTIETA  LA  LR GSLP  + +VE R VG
Sbjct: 227 DENLISAPVVGPEFAATGITGGSAVITGNFTIETANDLAVQLRGGSLPFPVAVVENRTVG 286

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A LG DSI     A + GL+L++LFM + Y   G++AD ++ +  ILTLA  +LLG TLT
Sbjct: 287 ATLGQDSIKSSIYAGIGGLILVLLFMALYYRLPGIIADIALIIYAILTLAAFALLGVTLT 346

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAG +L IG+AVD+N+L+ ER REE R  QS++ S++ GF RA+S+I DSN+T LIA
Sbjct: 347 LPGIAGFILSIGMAVDANVLIFERTREEIRAGQSLYRSVEAGFYRAFSSILDSNVTTLIA 406

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
              LF+ G G V+GFA+T+ + +LISMFTA++  R ++I 
Sbjct: 407 CGALFWLGSGLVKGFALTLAVGVLISMFTALTCSRTLLIL 446


>gi|307719626|ref|YP_003875158.1| hypothetical protein STHERM_c19500 [Spirochaeta thermophila DSM
           6192]
 gi|306533351|gb|ADN02885.1| hypothetical protein STHERM_c19500 [Spirochaeta thermophila DSM
           6192]
          Length = 572

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 139/447 (31%), Positives = 232/447 (51%), Gaps = 34/447 (7%)

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++      +   L+      L    +     +       D     A+++++E++  RI
Sbjct: 129 LKELRNRTLQLGLDLSGGLTVTLAPDFSSLAERLG--HEPTDVERRDAVDRALEVLNNRI 186

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS--------- 222
           D+ G++E  I++L  ++ILI++PG+ DP+R+   L    +++FH V    +         
Sbjct: 187 DRFGVTEPQIRKLEGNKILIEIPGDPDPTRVNSFLMGKGRLTFHIVDDETTQKLIEYQRQ 246

Query: 223 ----------------KKGFMFGVRFLRDSDGNQYLVEDKVE-----ISGIHLNGATANF 261
                             G      + +D  G   LV          + G +L  A  + 
Sbjct: 247 TGITDPAILAERVDFVPAGTKIAGYYTKDKYGVDKLVRSIAIYEEVGLDGTYLTSAQVSR 306

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
           DP T KPVV  S +  G+  F+++T  N+ + LA+VLD +V     I + I         
Sbjct: 307 DPLTGKPVVLFSLNSEGSDIFYKLTSANVDRSLAIVLDDKVKAYATIQEPIRGNVQITG- 365

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
            F+ E A  ++ +LR  +LP+ L I +   VGA LG DSI +G  AIV G  L+VLFMI+
Sbjct: 366 -FSTEEAQNISLILRTAALPVDLVIEDYEAVGASLGEDSIRRGVQAIVLGFALVVLFMIL 424

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   G+VAD ++ LN+    ALLS+   TLTL SIAG++L +G+AVD+N+++ ERI+EE
Sbjct: 425 YYKGAGIVADIALLLNLFFMTALLSVFNFTLTLTSIAGVILTVGMAVDANVIIYERIKEE 484

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  ++   ++  GFS+A+ TI D+N+T  IA + L   G G ++GFA+T+ + I+ SMF
Sbjct: 485 LRLGKTPASAVKAGFSKAFWTIVDANVTTFIAAIFLSQVGRGPIQGFAVTLAIGIVSSMF 544

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPL 528
           TA+ + R +  +++  +K+K + I+  
Sbjct: 545 TALVVSRLIFDYLVDQRKVKKLSISWR 571



 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 38/225 (16%), Positives = 99/225 (44%), Gaps = 4/225 (1%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                       +R   Q      +      +  +   +     I++ E VG  +  + I
Sbjct: 345 DKVKAYATIQEPIRGNVQITGFSTEEAQNISLILRTAALPVDLVIEDYEAVGASLGEDSI 404

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
           R+G+  +++    +++++ + +K    + A   L+L++       ++F     LT++A V
Sbjct: 405 RRGVQAIVLGFALVVLFMILYYK-GAGIVADIALLLNLFFMTALLSVFNFTLTLTSIAGV 463

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  +G +V+  V++Y+R+++ ++L     +    +    ++     V  ++  FI+ + +
Sbjct: 464 ILTVGMAVDANVIIYERIKEELRL---GKTPASAVKAGFSKAFWTIVDANVTTFIAAIFL 520

Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +  G   I  FA+ +A GIV +  +++ ++  I  ++ D R    
Sbjct: 521 SQVGRGPIQGFAVTLAIGIVSSMFTALVVSRLIFDYLVDQRKVKK 565


>gi|292670698|ref|ZP_06604124.1| protein-export membrane protein SecD [Selenomonas noxia ATCC 43541]
 gi|292647644|gb|EFF65616.1| protein-export membrane protein SecD [Selenomonas noxia ATCC 43541]
          Length = 410

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 148/392 (37%), Positives = 233/392 (59%), Gaps = 27/392 (6%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
               +  L       + +        QV   A+ + + I+ +R++ +G++E  IQR G  
Sbjct: 19  AGSIRQGLDLQGGTHVVLEAVDTEQAQVNDDAMNRVVAIMEKRVNSLGLTEPIIQREGDR 78

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           R++I+LPG +DP    Q +G TA + F                             E   
Sbjct: 79  RVIIELPGIKDPDAAIQTIGKTAMLEFR--------------------------DEEGNT 112

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            ++G  L  A A+ +P+T + VV++ F + GA++F ++T  N+G+ +A++LDG VLTAP 
Sbjct: 113 VLTGTDLKDAQASTNPQTGQNVVNLEFSDEGAQKFADLTTRNVGRTIAILLDGEVLTAPN 172

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           + + I  G+A+I+G  T+E A  LA +LR+G+LP+K+ I+E R VG  LG DS  K   +
Sbjct: 173 VREPILGGRAEITGQKTLEEAQNLAVVLRSGALPVKVEIIETRTVGPTLGQDSKDKSQFS 232

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            V GL  ++LFMI  Y   GL+AD ++    ++ L +L L+ ATLTLP +AGI+L IG+A
Sbjct: 233 FVVGLGAVILFMIFFYHLSGLIADVALMAYTVMLLGVLYLMDATLTLPGVAGIILSIGMA 292

Query: 428 VDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           VD+N+L+ E  +EE +  N+S+  ++D GF RA++TIFDSN+T LIA  VLFF G G +R
Sbjct: 293 VDANVLIFEHFKEEYQVNNKSLRLAMDAGFKRAFTTIFDSNVTTLIAAGVLFFLGTGTIR 352

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           GFAIT+G+  ++SMFTAI++ + ++  +I  K
Sbjct: 353 GFAITLGVGTILSMFTAITLTQYLLKLMINSK 384



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 71/172 (41%), Gaps = 3/172 (1%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++   K     ++   A+++++   +     L A   L+      LG   L  
Sbjct: 216 TVGPTLGQDSKDKSQFSFVVGLGAVILFMIFFYHLS-GLIADVALMAYTVMLLGVLYLMD 274

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  VA ++  IG +V+  V++++  ++  ++     S R  +D            +
Sbjct: 275 ATLTLPGVAGIILSIGMAVDANVLIFEHFKEEYQVNNK--SLRLAMDAGFKRAFTTIFDS 332

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++   I+   +   G   I  FAI +  G +++  ++I +   +L  + + +
Sbjct: 333 NVTTLIAAGVLFFLGTGTIRGFAITLGVGTILSMFTAITLTQYLLKLMINSK 384



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 76/255 (29%), Gaps = 28/255 (10%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-VDED--DFV 66
           + S+   IG    L   L                I  GLDL+GG+H+VLE VD +     
Sbjct: 1   MISIAVIIGAFFFLVQPL-------------AGSIRQGLDLQGGTHVVLEAVDTEQAQVN 47

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSK 125
           +  +      +   +   G+    +++  + ++ +     +  +     +          
Sbjct: 48  DDAMNRVVAIMEKRVNSLGLTEPIIQREGDRRVIIELPGIKDPDAAIQTIGKTAMLEFRD 107

Query: 126 LN----------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID-QI 174
                        D + +    T +  +++  S     +            I   +D ++
Sbjct: 108 EEGNTVLTGTDLKDAQASTNPQTGQNVVNLEFSDEGAQKFADLTTRNVGRTIAILLDGEV 167

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             + +  + +   R  I      + ++   ++  +  +     +      G   G     
Sbjct: 168 LTAPNVREPILGGRAEITGQKTLEEAQNLAVVLRSGALPVKVEIIETRTVGPTLGQDSKD 227

Query: 235 DSDGNQYLVEDKVEI 249
            S  +  +    V +
Sbjct: 228 KSQFSFVVGLGAVIL 242


>gi|289522131|ref|ZP_06438985.1| AcrB/AcrD/AcrF family protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289503967|gb|EFD25131.1| AcrB/AcrD/AcrF family protein [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 1034

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/684 (8%), Positives = 171/684 (25%), Gaps = 52/684 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++ +  +  +G +  +        +D  P   P   +              E  
Sbjct: 9   KRPTATLMFFFAVLLLGAVSFI-----GIKVDLLPQFEPPEIL---------VITTWEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + ++       +     + + L F      +         +  
Sbjct: 55  AASDVEQEITEEVEDRMATIQGLDEITSTSSDEASAVVLRFEWGEDLDARMGDARDQVNI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  D    +L+  T   + ++L      +           +       I       
Sbjct: 115 IRRRLPDDADDPILIKVTSSAMPVMLVIF---KAGPTFPGLYHFVENDVGKLIQQVPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    D  +L+    +  +++      + +     F    L        
Sbjct: 172 DVSVFGGEEREIKILLDAEKLKAYNLSAQQIASILQQEHFNLPAGSFKEGMLEYQIRVPG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   EI    +                         +  +      +           
Sbjct: 232 RYKLVNEIGYAIVGT--------------------TDGKPVYLKDVATVEDGYKDASTFG 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                     + +     +           L  +  +        ++        L S  
Sbjct: 272 WFDGARSVVMMITKNTDANTVQVSNGVKARLEELKGSIFPSDVDYVIGYDQSEFILNSLK 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LV +V ++ +      L    +I  ++I T   + +LG T+ L +++ +
Sbjct: 332 QLATTLLYGIVLVFLVTYVFLRRLPGTLAVCGAIPFSLIATFIAMRILGYTVNLMTLSAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G+ VD+ I+  +++    +  +    +  +G     S++  S +T L   + L F 
Sbjct: 392 TVACGMVVDNAIVTTDQVIYHIKMGEKRQIASMLGAGEVGSSLIASTLTTLAVLLPLIFI 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMM--------IFIIRYKKMKSIDINPLS 529
               G      ++ M L+I+ S+  ++S +  +           +  ++  K I      
Sbjct: 452 TGLVGIFFSSLSVVMSLAIVSSLVVSLSFIPMVGSKTFKSQEDKLFIHRYSKRILTLLER 511

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            + L+ D       +     +  ++      +               G +++        
Sbjct: 512 NYALLIDWALRNRKKIIGLALLCAVFTV---VGFTRIGTELIPKSDTGSVRVNFRLPEGT 568

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +       + +    +                     ++                    
Sbjct: 569 RVEETERVAKDVMAYALDNIPELENVYIYGGSFGDGMSALRGESSNTGTVGIELVSKGER 628

Query: 650 TIQNTEIVGPKISRELIRKGIVGV 673
                ++          + G   V
Sbjct: 629 ERSGFQVAAQVRQYLNAKAGFEAV 652



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 94/248 (37%), Gaps = 7/248 (2%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V   ++R    +    ++       +            +  +   V   ++K + EI   
Sbjct: 780  VTGDMIRLTNLATIKEELGPPEIHRKNRQRYITIELDTEGRSVGNVATDIEKALKEIELP 839

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
            + ++       +  +E   +  + +++  + + + +  +++ +      + ++   +T  
Sbjct: 840  AGMRTEITGDVEDMKETFLQMGLLILLGVVLVYMIMAGQYEAFLDPFIIMFSVPFALTGA 899

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            +G   L G   +L  +  ++ LIG  VN+ +V+ D +     L        D + +  + 
Sbjct: 900  VGALLLTGSYLSLQGLLGIVMLIGTVVNNAIVLVDYVN---LLRARGYVMHDALVEGGSR 956

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + T++   + +LPMA+    G  +    A+ +  G+  +   ++ +   +   + 
Sbjct: 957  RLRPILMTTLTTVLGMLPMALSQGEGAEIWRPLAVSVIGGLSFSTLVTLVLIPVVYSLVE 1016

Query: 825  DWRAKNAR 832
            +   +  R
Sbjct: 1017 EKIRRRPR 1024



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 82/241 (34%), Gaps = 9/241 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           ++           +      +    V +           +V   VK ++ E+       +
Sbjct: 254 LKDVATVEDGYKDASTFGWFDGARSVVMMITKNTDANTVQVSNGVKARLEELKGSIFPSD 313

Query: 654 TEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTL 708
            + V      E I   +      ++   + + +  ++  +      A+   +   +  T 
Sbjct: 314 VDYVIGYDQSEFILNSLKQLATTLLYGIVLVFLVTYVFLRRLPGTLAVCGAIPFSLIATF 373

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               + G   NL  ++A+    G  V++ +V  D++  ++K+       +        E 
Sbjct: 374 IAMRILGYTVNLMTLSALTVACGMVVDNAIVTTDQVIYHIKMGEKR---QIASMLGAGEV 430

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              S+  S    ++VL   ++   ++G F   ++  + +A  SS+ ++   +  +     
Sbjct: 431 GS-SLIASTLTTLAVLLPLIFITGLVGIFFSSLSVVMSLAIVSSLVVSLSFIPMVGSKTF 489

Query: 829 K 829
           K
Sbjct: 490 K 490


>gi|197118545|ref|YP_002138972.1| RND family metal ion efflux pump inner membrane protein [Geobacter
           bemidjiensis Bem]
 gi|197087905|gb|ACH39176.1| metal ion efflux pump, RND family, inner membrane protein
           [Geobacter bemidjiensis Bem]
          Length = 1045

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/678 (12%), Positives = 200/678 (29%), Gaps = 46/678 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +++L+++I   G+         ++ +D  P       I                 
Sbjct: 11  RNRVIILMLFALIIAWGVWSV-----YKTPVDAIPDLSDNQVI---------VFTDYPGR 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          L +      S     + I + F D         +V   L  
Sbjct: 57  SPQVVEDQVTYPLAVNLQGLPQVRAVRASSAFGFSMIYVIFEDKADIYWARTRVLERLNY 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       L    T        +       +          +R    Q+       
Sbjct: 117 AASLLPSGVVPTLGPDGTGVGHVFWYTLEGKGYDLEQLRTLQDWFVRY---QLNTVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + +   + DP+RL       ++++      NN   G +            + 
Sbjct: 174 EVASIGGFVREYQVDLDPNRLFAYNIKVSQVADAIKKSNNDVGGRLLEQADAEFLIRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   ++  I +                       G   + +                 
Sbjct: 234 YVKSTADLENIVVGADM------------------RGTPIYVKNLGTVQLGGAIRRGMLD 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I   +   +    I+        L  G  P    +V          +   
Sbjct: 276 MNGEGEAVGGIVVMRYGENAKDVIDRVKEKIVSLEKGLPPGVKIMVSYDRSDLIERAIDT 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K +    + +V +V+ + +L+ +  LV   ++ + V+++   + L+G +  + S+ GI 
Sbjct: 336 LKHSLVEESIVVSLVILVFLLHFQSALVIVLTLPIAVLISFITMKLMGVSSNIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFC------SLDMGFSRAYSTIFDSNITALIATV 475
           + IG+ VD+ +++ E       +             +     +    IF S    +++ V
Sbjct: 396 IAIGVLVDAGVIMVENCYRHLSEMPPEERKEKRLDVIIASAKQVGRAIFFSLAIIILSFV 455

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   S++ S F AI++V  +M F++R K          + F 
Sbjct: 456 PVFLLEGQEGKMFHPLAFTKTFSMMGSAFIAITLVPVLMYFLMRGKMPPESSNPVSTFFI 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +   I    ++ +   + ++++    +I +  + G  +      G  L +     +   
Sbjct: 516 KMYSPIIRWVLKWKKTTIALNVVALAIAIPMFMSIGSEFMPPLDEGSLLYMPVT--LPNV 573

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +      +Q+ D   ++    ++ L ++      +      +      +          
Sbjct: 574 SINEAKRLIQVQDTVIKSVPEVEHVLGKVGRAETSTDPAPVSMFESIIILKPKDKWRAGV 633

Query: 653 NTEIVGPKISRELIRKGI 670
               +  ++  +L + G+
Sbjct: 634 TKADIVSELDSKLQQIGV 651



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 81/241 (33%), Gaps = 7/241 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L       +   N +GE    + +     ++      ++     + + +P         
Sbjct: 264 QLGGAIRRGMLDMNGEGEAVGGIVVMRYGENAKDVIDRVKEKIVSLEKGLPPGVKIMVSY 323

Query: 657 VGPKISRELIRKGIVGVII-SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    I      ++  S +  L+ +     +  AL  + TL + +  +     L G
Sbjct: 324 DRSDLIERAIDTLKHSLVEESIVVSLVILVFLLHFQSALVIVLTLPIAVLISFITMKLMG 383

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           +  N+ ++  +   IG  V+  V++ +   R    M          D+I  S  +     
Sbjct: 384 VSSNIMSLGGIAIAIGVLVDAGVIMVENCYRHLSEMPPEERKEKRLDVIIASAKQVGRAI 443

Query: 773 VYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            ++     +S +P+ +  G    +    A    F ++ +A  +I +   ++ F+   +  
Sbjct: 444 FFSLAIIILSFVPVFLLEGQEGKMFHPLAFTKTFSMMGSAFIAITLVPVLMYFLMRGKMP 503

Query: 830 N 830
            
Sbjct: 504 P 504



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 52/149 (34%), Gaps = 10/149 (6%)

Query: 695  GAITTLILDITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY- 751
             ++  L +      G +   L G   ++      + L G +V   VV+   + + +    
Sbjct: 890  ASMVMLSVPFALVGGVYLVKLLGYNMSVAVWVGFIALYGIAVETGVVMVIYLHEALDKKL 949

Query: 752  ----TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                 T     D   +     L   + T   A + ++P+      G  V+   A PM  G
Sbjct: 950  LKGPVTEQDIYDATFEGAVLRLRPKLMTVAVALLGLVPIMWSTGTGADVMKPIAAPMIGG 1009

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++ +A   + +   I + +     K  ++
Sbjct: 1010 MISSAVHVLIMTPVIFVLMKKHDLKKGKL 1038


>gi|254239786|ref|ZP_04933108.1| hypothetical protein PA2G_00412 [Pseudomonas aeruginosa 2192]
 gi|126193164|gb|EAZ57227.1| hypothetical protein PA2G_00412 [Pseudomonas aeruginosa 2192]
          Length = 1036

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 144/492 (29%), Gaps = 24/492 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            + +L     + +   +    +   S +        S       +TL F+  +  +  A 
Sbjct: 51  INALLPGGSPETMASSVATPLEVQFSAIPGITEMTSSSALGTTTLTLQFSLDKSIDVAAQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L VD              S ++    ++  +   IE S         Q
Sbjct: 111 EVQAAINAAAGRLPVDMPNLPTWRKVNPADSPIMI-LRVNSEMMPLIELSDYAETILARQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       Q     +    +  +  P +L     T A +                     
Sbjct: 170 LSQVNGVGQIFVVGQQRPAIRIQAQPEKLAAYQLTLADLRQSLQS--------------- 214

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +          ++   AN          D+          F      I   
Sbjct: 215 -----ASVNLAKGALYGEGRVSTLAANDQLFNASDYDDLVVAYRQGAPVFLKDVARIVSA 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             +   +   +   T +        LR          V      
Sbjct: 270 PEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAALPRLREMLPATIEVDVLNDRTR 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +  GLV++V+ + +      L+    + +++  + A + +LG TL 
Sbjct: 330 TIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVATVLAVSLSASFAAMYVLGFTLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  +++ +G  VD  I+V E I        S   +   G +    T+   + + + A
Sbjct: 390 NLTLVALIIAVGFIVDDAIVVVENIHRHLEAGASKVEAALKGAAEIGFTVISISFSLIAA 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   R FA+++ ++ILIS+  ++++   +    +   +         + 
Sbjct: 450 FIPLLFMGGIVGRLFREFAVSVTVAILISVLASLTLAPMLASRFMPALRHADAPRKGFAE 509

Query: 531 FFLIPDCIAIQF 542
           +        +++
Sbjct: 510 WLTGGYERGLRW 521



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 95/244 (38%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L  V   + + +   +           LV L+    + V     ++   
Sbjct: 249 VVAYRQGAPVFLKDVARIVSAPEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAAL 308

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ E++P +   +      +  R  + +  + ++++   +++ + +  +   A   + T
Sbjct: 309 PRLREMLPATIEVDVLNDRTRTIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVAT 368

Query: 700 -LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L + ++ +     + G   N   + A++  +G+ V+D +VV + +    +      S  
Sbjct: 369 VLAVSLSASFAAMYVLGFTLNNLTLVALIIAVGFIVDDAIVVVENIH---RHLEAGASKV 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S +   + +P+   GG V      FA+ +   I+++  +S+ +
Sbjct: 426 EAALKGAAEIGFTVISISFSLIAAFIPLLFMGGIVGRLFREFAVSVTVAILISVLASLTL 485

Query: 816 AAPI 819
           A  +
Sbjct: 486 APML 489



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 89/235 (37%), Gaps = 6/235 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                    Q         V L +     V+    ++ V++   EI   STI        +
Sbjct: 790  AAPRSGPLQINHNGMFPAVNLSFNLAAGVSLGEAVQAVQRAQEEIGMPSTIIGVFQGAAQ 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
              +  +    + ++ + IA+ I + + ++ +   L  ++TL       +     +G +F+
Sbjct: 850  AFQSSLASQPLLILAALIAVYIILGVLYESFVHPLTILSTLPSAGIGAVFLLWAWGQDFS 909

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + A+  ++ LIG    + +++ D     +      +S    I ++        + T++AA
Sbjct: 910  IMALIGIVLLIGIVKKNGILMVD--FAIVAQREQGMSAEQAIYQACLTRFRPIMMTTLAA 967

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  +P+ +    G  +     I +  G++V+   ++F    + L +     +  
Sbjct: 968  LLGAIPLMIGFGTGSELRQPLGIAVVGGLLVSQVLTLFSTPVVYLALERLFHRRG 1022


>gi|332972961|gb|EGK10903.1| cation efflux system [Desmospora sp. 8437]
          Length = 1024

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 82/648 (12%), Positives = 185/648 (28%), Gaps = 43/648 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   +  +   ++  +G +      L    +D  P   P           G         
Sbjct: 16  RRPVFTTVAVIIVLVMGFVA-----LNDLQMDLLPDIQPPV---------GAVVASYPGA 61

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +     L          R+    + L F  S+    + + V   +  
Sbjct: 62  GPEEVLDKVTQPLERQLGTLPGLKNIQSQTREGSTLVLLEFEWSQDINQLQNDVISRINQ 121

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D      +        I+              ++  E I +    +       
Sbjct: 122 --TSLPDDVDTPSFLKFDPSTFPIIQLSVMTKGTSD---KELREDIHRISQNLSQLPGVA 176

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     Q+    D  ++++   + + +         S+ G                
Sbjct: 177 SADASGLREQQIRISLDAEQMKKHHLSQSDIRERIQATQISQPGG--------------I 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           + +   +++    +  T+    +  +  VD        ++       ++           
Sbjct: 223 IHKGDQDLTARVSSELTSLKQFRELELAVD----PRTGKKITLDDVADVRIGKEEQNVIT 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +              L           +          +   
Sbjct: 279 RTNNKPSIGINVFKQSGANTAEVSRDVRAELDKLSKKL--DVDTHIIFDQGKYVDMAIQN 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   L +++LF+ +   +  L+   +I  +VI T  L+ L   TL + ++ G+ 
Sbjct: 337 VSDTMVMGGILAMLILFLFLRSFRSPLIIGVAIPFSVITTFVLMYLSDFTLNIMTLGGLA 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIG+ VD++I+V E I    ++ +    +   G       +  S +T +   V + F  
Sbjct: 397 LGIGMLVDNSIVVIENIHRHLQQGEDHKQAAIKGAGEVAGAVTASTLTTVFVFVPVVFVS 456

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA T+  S+L S+  A+++V  M   I++  K    +    SRF+     +
Sbjct: 457 GIVGQLFREFAFTVTFSLLASLLVALTLVPMMAARIMKRPKTGWGEQQEQSRFYRGFRRL 516

Query: 539 AIQFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               +  RF  + IS+         +            +G   + V   +   L   +  
Sbjct: 517 LQWSLAHRFAVILISLALLGAGAVGVRSVGTEYLPASDEGIFIVDVKMPQGTGLDKTQKV 576

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              ++      Q+    +  +   +        +      V       
Sbjct: 577 SAQVESILAEDQDIKTYQASMGSNRNAIAGESGRNISQIYVNAVDKSE 624



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/216 (11%), Positives = 60/216 (27%), Gaps = 8/216 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    +     +             + +            V   V+ ++ ++     + 
Sbjct: 260 TLDDVADVRIGKEEQNVITRTNNKPSIGINVFKQSGANTAEVSRDVRAELDKLSKKLDVD 319

Query: 653 NT--EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                  G  +   +       V+   +AMLI       +   L     +   +  T   
Sbjct: 320 THIIFDQGKYVDMAIQNVSDTMVMGGILAMLILFLFLRSFRSPLIIGVAIPFSVITTFVL 379

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             L     N+  +  +   IG  V++ +VV + +    +        +    K   E  G
Sbjct: 380 MYLSDFTLNIMTLGGLALGIGMLVDNSIVVIENIH---RHLQQGEDHKQAAIKGAGEVAG 436

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
               +++      +P+       G +   FA  + F
Sbjct: 437 AVTASTLTTVFVFVPVVFVSGIVGQLFREFAFTVTF 472



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ + +    + TL L +        L      +TA+  ++ L G  VN+ 
Sbjct: 864  FVFLVLAAQFESFKYPFVIMLTLPLMVIGVAAALWLTQTPVGVTAMIGLIVLTGIVVNNA 923

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +V+ D +    +L    +   + I  +    L   + T+    + ++P+A+    G  + 
Sbjct: 924  IVLVDYIN---QLKARGVPSYEAIVDAGITRLRPILMTATTTVLGLVPLALGWGEGTEIQ 980

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               AI +  G+  +   ++ +   +  +      +  +
Sbjct: 981  QPMAIVVIGGLFSSTLLTLLVIPVVYSWFDPETRRMKK 1018


>gi|317180378|dbj|BAJ58164.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori F32]
          Length = 1026

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/568 (11%), Positives = 157/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +    +     +   +       +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKKTIKPMLQKIDGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILVNANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++V+ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISVMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKLGMEFM 540



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ +  + + + + +   ++        + T+ L  +       L     ++ ++  ++ 
Sbjct: 854  LIALATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLIL 913

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+
Sbjct: 914  LIGMVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLAL 970

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 971  ASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1017



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SVMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|260576935|ref|ZP_05844917.1| acriflavin resistance protein [Rhodobacter sp. SW2]
 gi|259020871|gb|EEW24185.1| acriflavin resistance protein [Rhodobacter sp. SW2]
          Length = 1037

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/513 (12%), Positives = 140/513 (27%), Gaps = 44/513 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEV 60
           RN    + +   +   G +            +  P   +P   +SLG           E 
Sbjct: 9   RNARLTISILLFLMLSGTMA-----YISIPKEAEPDIQIPIIYVSLG----------YEG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              +     L    +     ++       +  Q    + + F      +     V   + 
Sbjct: 54  ISPEDSERLLLRPMETALKSIQGIKKMTATAFQGGGNVVIEFQAGADLDTALVDVRNKVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L     +  +      E  +++   +                R+  D+I      
Sbjct: 114 DAKRDLPDGVDEPTVNEVNISEFPVLVVTLSGAVPER----LLAATARELRDRIEEIPGV 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           +           +    DP++L         M       N             R +    
Sbjct: 170 LDAALQGVRDDLVEIIIDPAKLSSYNLRPDTMIAGFNANNRLIAAGSLEGAEGRYAIKVP 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L+E   ++                     ++     G           I   L      
Sbjct: 230 SLIETVEDL--------------------ANLPVVASGNAIVRTRDLAEIRPTLKDPETV 269

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L          S ++  +   T++    + A L+            +    +     S
Sbjct: 270 TRLDGKPAVAIEVSKRSGANLIETVDQVKAITAALQTQLPEGVEVSFSQDKSTSIRQLLS 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +      LV IV+  ++      L+   +I  + ++ +  L + G T+ L  +  +
Sbjct: 330 DLQNSVLTAVVLVFIVILYVLSVRSSILI-GLAIPASFLMGILGLQMAGLTINLIVLFSL 388

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L +G+ VD  I+V E       +      +      R    +  S +T + A   L F+
Sbjct: 389 ILAVGMLVDDAIIVTEYAERRMSEGMEKRAAFTEASHRMAGPVIASTMTRIAAFSPLLFW 448

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAM 510
               G  ++   IT+  ++  SM  A+  V  +
Sbjct: 449 PGVVGEFMKYMPITLIATLSASMVYALIFVPTL 481



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 88/244 (36%), Gaps = 9/244 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    N  V    +     +L+  +   +        +   +    + +     ++ + 
Sbjct: 242 PVVASGNAIVRTRDLAEIRPTLKDPETVTRLDGKPAVAIEVSKRSGANLIETVDQVKAIT 301

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +   +P     +         R+L+      V+ + + + I I        ++  +  
Sbjct: 302 AALQTQLPEGVEVSFSQDKSTSIRQLLSDLQNSVLTAVVLVFIVILYVLSVRSSI--LIG 359

Query: 700 LILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
           L +  +  +G   L   G+  NL  + +++  +G  V+D ++V +      +  +  +  
Sbjct: 360 LAIPASFLMGILGLQMAGLTINLIVLFSLILAVGMLVDDAIIVTE---YAERRMSEGMEK 416

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           R    ++ +   G  + ++M    +  P+  W G V+G F   M    ++A  S+  + A
Sbjct: 417 RAAFTEASHRMAGPVIASTMTRIAAFSPLLFWPG-VVGEFMKYMPI-TLIATLSASMVYA 474

Query: 818 PILL 821
            I +
Sbjct: 475 LIFV 478



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 85/267 (31%), Gaps = 21/267 (7%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + PV +S   + + +   G ++  +          ++        +  V  MV     
Sbjct: 761  TPDGPVPISNFVTRVAAPTTGTLTRIDGARTVTVQAGIREGVQAQPVRDAVAAMVTDIFK 820

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFKWYFALGAIT-TLI 701
                        + G  + +      +      +   +   +  +F  + ++G +   ++
Sbjct: 821  TEDYADAGLRWTMAGEDVEQAEAGAFLSKAFAAALFLIFGVLLAQFNKFISVGLVLSAVV 880

Query: 702  LDITKTLGFFALFGIEFNL-TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            +     L    + G  F +      V+ L G  VN+ +V+     +        +   + 
Sbjct: 881  MSTIGVLLGLMIMGQPFGVVMTGIGVIALAGVVVNNNIVLIATYDELRHG---GMDKIEA 937

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV------------WGGSVIGS---FAIPMAFGI 805
            I ++  E     V T+M A + VLP+A             +G          +  + +G+
Sbjct: 938  ILETCRERARPVVLTAMTAILGVLPIAFGLNIELMSHETTFGAPSTQWWIALSSAIVYGL 997

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
              A   ++ +   +L+ +        +
Sbjct: 998  AFATVLTLLVTPSMLMLVSRSDKPREK 1024


>gi|221632667|ref|YP_002521888.1| protein-export membrane protein SecD [Thermomicrobium roseum DSM
           5159]
 gi|221156053|gb|ACM05180.1| protein-export membrane protein SecD [Thermomicrobium roseum DSM
           5159]
          Length = 489

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 115/535 (21%), Positives = 195/535 (36%), Gaps = 70/535 (13%)

Query: 1   MRNNPWLVILYSMIC-CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           MR  PW  ++  ++     + + LP       LD F        + LGLDL+GG  LVL+
Sbjct: 1   MRIRPWQTLIVIVLLSLAAIWVDLPG----QQLDPF-GWKRSITVRLGLDLQGGVQLVLQ 55

Query: 60  VDED---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKV 115
                        LQ   D +   +   G+    ++    ++I +     +  E     +
Sbjct: 56  ARPPAGVTVTQDVLQGTRDTIERRVNGLGVSEPVIQTRGTDQILVELPGFQDPERAVRVL 115

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                        +      +  T    +  ++        + A                
Sbjct: 116 QRTALLEIIDTKGEFLPVGTIVNTTLGPASDVAPTPTASASTPA---------------- 159

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                     S             +                V         +       D
Sbjct: 160 ----------SATEPAAASETAAATPGATPTPAATPTPTGTVYETIVTGADLKDAYPTTD 209

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             GN  +  +    +       T+    +    VVD         R     R  I     
Sbjct: 210 QFGNLVVGFELKPEAADRFYQYTSTHIGQPMSIVVDKQVINTATIRDAIRDRGIIQGL-- 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                                       T +    LA  L++G+L + L +V+ R VG  
Sbjct: 268 ----------------------------TAQEVRDLALQLKSGALAVPLEVVQSRTVGPT 299

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG DSI K   A + GL L+ LFMI+ Y   G ++  ++ L      AL  L+   LTLP
Sbjct: 300 LGQDSIRKSIVAGIVGLGLVALFMILYYRLPGFISVIALLLYTAYVFALFKLIPVVLTLP 359

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            IAG +L IG+AVD+N+L+  RIREE R  + +  +++ GF+ A+ +I DSNI+ +I+ +
Sbjct: 360 GIAGFILSIGMAVDANVLIFARIREELRLGRPIARAIEEGFNHAWPSIRDSNISTMISCM 419

Query: 476 VLFFFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +LF+FG       ++GFA+T+ + + +SMFTAI + R ++  ++     + +   
Sbjct: 420 ILFWFGRYVGATIIQGFALTLFIGVAVSMFTAIVVTRTLLRLLLTRHLFRDVRWF 474



 Score =  119 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 91/221 (41%), Gaps = 8/221 (3%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           + + I               +R +       AQ      ++ K   +     +  +  VG
Sbjct: 238 QPMSIVVDKQVINTATIRDAIRDRGIIQGLTAQEVRDLALQLKSGALAVPLEVVQSRTVG 297

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
           P + ++ IRK IV  I+    + +++ + ++      ++  L+L        F L  +  
Sbjct: 298 PTLGQDSIRKSIVAGIVGLGLVALFMILYYRLP-GFISVIALLLYTAYVFALFKLIPVVL 356

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            L  +A  +  IG +V+  V+++ R+R+ ++L          I++  N        ++++
Sbjct: 357 TLPGIAGFILSIGMAVDANVLIFARIREELRL---GRPIARAIEEGFNHAWPSIRDSNIS 413

Query: 779 AFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFI 815
             IS + +  +    G ++I  FA+ +  G+ V+  ++I +
Sbjct: 414 TMISCMILFWFGRYVGATIIQGFALTLFIGVAVSMFTAIVV 454


>gi|163761627|ref|ZP_02168697.1| acriflavin resistance protein [Hoeflea phototrophica DFL-43]
 gi|162281121|gb|EDQ31422.1| acriflavin resistance protein [Hoeflea phototrophica DFL-43]
          Length = 1047

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/516 (11%), Positives = 136/516 (26%), Gaps = 42/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    + +   +   G +            +  P                   L     
Sbjct: 9   RNARLTLAVLMFLIVAGTMS-----YISIPKEAEPDIKIPIIY---------VSLSYSGI 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +     L    +     +        +  Q    + + F          D V   +  
Sbjct: 55  SPEDSERLLLRPMETKLKNITGIKEMRSAAYQGGGNVVIEFMAGADLAKALDDVRNKVSD 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L     +  +      E  +++   + +       +      R+  D+I      +
Sbjct: 115 AKPDLPQGADEPTVNEVNLSEFPVLVVTLSGNVPERALTK----AARELRDRIEEVTGVL 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L        +M       N+            R +     
Sbjct: 171 DASLQGARDDLVEVIIDPVKLSSYGMQLDQMIAAVNASNSLVAAGALEGSEGRYAVKVPL 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+E   ++                     ++                 I           
Sbjct: 231 LIETVEDV--------------------ANLPIIAGPNAVVRARDLATIRSTFKDAETIT 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L          S +   +   T++   ++A   +A           +    +     S 
Sbjct: 271 RLDGKPAIAIEVSKRTGANLIETVDAVKLVAEDFQAMLPEGAEIGFSQDKSTSIRQLLSD 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + +      LV IV+   +      L+  F+I  + ++ +  LSL G T+ +  +  ++
Sbjct: 331 LQNSVLTAVILVFIVILYALSGR-ASLLIGFAIPASFLMGMLGLSLAGLTVNIVVLFSLI 389

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+V E       +      +  +   R    +  + +T + A   L F+ 
Sbjct: 390 LAVGMLVDDAIIVTEFAERRMTEGMDRKEAFSLAAKRMAGPVVAATLTRVAAFSPLLFWP 449

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G  ++   IT+  ++  S+F A+     +    
Sbjct: 450 GTVGEFMKYMPITLIATLSASLFYALVFTPTLGAMF 485



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/199 (11%), Positives = 66/199 (33%), Gaps = 6/199 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                +++V +    ++P               R+L+      V+ + I + I I     
Sbjct: 292 ETVDAVKLVAEDFQAMLPEGAEIGFSQDKSTSIRQLLSDLQNSVLTAVILVFIVILYALS 351

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
              +L     +       +   +L G+  N+  + +++  +G  V+D ++V +   +  +
Sbjct: 352 GRASLLIGFAIPASFLMGMLGLSLAGLTVNIVVLFSLILAVGMLVDDAIIVTE-FAE--R 408

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
             T  +  ++    +     G  V  ++    +  P+  W    G  +    I +   + 
Sbjct: 409 RMTEGMDRKEAFSLAAKRMAGPVVAATLTRVAAFSPLLFWPGTVGEFMKYMPITLIATLS 468

Query: 807 VAASSSIFIAAPILLFIYD 825
            +   ++     +      
Sbjct: 469 ASLFYALVFTPTLGAMFAK 487



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 94/300 (31%), Gaps = 31/300 (10%)

Query: 554  ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                      L        +     +++          + V                   
Sbjct: 733  AGVDDAVDIRLRLPEDRRTLSTLDELRIETAEGSVPIANFVSREPAPSVGTLNRINGVRT 792

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                    +    D + Q  V E+ +  +        +   +         L++      
Sbjct: 793  ITVEAGISEGIQADPLRQGVVAELEEANLEAAGIRWKLAGEDEEQKAAGAFLMK----AF 848

Query: 674  IISAIAMLIYIWIRFKWYFALGAIT-TLILD-ITKTLGFFAL---FGIEFNLTAVAAVLT 728
              +   + + +  +F  + ++G +   +++  I   LG   +   FGI      V A+  
Sbjct: 849  GAAIFLIFVVLLAQFNRFLSVGLVLSAVVMSTIGVLLGLMIMGQPFGIVMTGIGVIALA- 907

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
              G  VN+ +V+ D    +       +   + I ++  E     V T++ A + VLP+A 
Sbjct: 908  --GVVVNNNIVLIDTF--DHLRRENGLDKLEAILETCRERARPVVLTAVTAILGVLPIAF 963

Query: 789  ------------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                        +G        S +  + FG+  +   ++ +   +L+ +   R+K+++I
Sbjct: 964  GFNLELMAHETTYGAPSTQWWISLSSAIVFGLAFSTVLTLVVTPSLLMIV--TRSKDSKI 1021


>gi|332673594|gb|AEE70411.1| acriflavine resistance protein [Helicobacter pylori 83]
          Length = 1026

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/568 (11%), Positives = 157/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +    +     +   +       +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKKTIKPMLQKIDGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILVNANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++V+ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISVMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKLGMEFM 540



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ +  + + + + +   ++        + T+ L  +       L     ++ ++  ++ 
Sbjct: 854  LIALATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLIL 913

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+
Sbjct: 914  LIGMVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLAL 970

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 971  ASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1017



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SVMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|241766400|ref|ZP_04764279.1| acriflavin resistance protein [Acidovorax delafieldii 2AN]
 gi|241363434|gb|EER58919.1| acriflavin resistance protein [Acidovorax delafieldii 2AN]
          Length = 1065

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/628 (11%), Positives = 167/628 (26%), Gaps = 70/628 (11%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GLL           +   P                    +     
Sbjct: 10  RPIATSLLMVALLIAGLLA-----YRLLPISALPEVDYPTIQ---------VTTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL FA     +    +V   +   
Sbjct: 56  PDVMTSNVTAPLERQFGQMPGLAQMSSTSSGGASVITLRFALDMAMDVAEQQVQAAINAG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     L +      + +L+   I       I  +  +  +   ++        
Sbjct: 116 SNLLPNDLPMPPLYSKVNPADAPILT-LAITSPSLPVIRLNDLVENRLAPKLSQVRGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P+ L  L  T   +       N  +                   
Sbjct: 175 VAIAGGRRPAVRIQANPTALAGLGLTLEDVRTVIAAANVKQAKG---------------G 219

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +     S I  N    +    ++  +   + + +      +   +     LA       
Sbjct: 220 FDGPARASTIDANDQLQSAQEYSNLVIAFKNGNPVRLGDVAQTVDEAENMRLAAWAGTPE 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A          +   +   T++    L   L+          V          S    
Sbjct: 280 TGARAGVILNIRRQPGANVIETVDRLKALLPQLQGTLPASIDVQVLTDRTTTIRASVKDM 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +   A+  GLV+ V+F+ +      L+   ++ L+++ T  ++ L G ++   ++  + +
Sbjct: 340 QIELALAIGLVVAVIFVFLRSASATLIPSVAVPLSLVGTFGVMYLAGFSINNLTLMALTI 399

Query: 423 GIGLAVDSNILVNERIREENRK------------------------------NQSVFCSL 452
             G  VD  I++ E I                                    + +   + 
Sbjct: 400 STGFVVDDAIVMIENIARHLEMPGNASAQAHGAEGSVQDAQASGHSQNTPAPHITPLQAA 459

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRA 509
             G  +   TI    I+ +   + L F G   G     FAITM ++IL+S   ++++   
Sbjct: 460 LAGSRQIGFTIISLTISLIAVLIPLLFMGDVVGRLFHEFAITMAVAILLSAVVSLTLTPM 519

Query: 510 MMIFI-------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           +   +          +  ++               +           +       +    
Sbjct: 520 LCARLLRHTPEESHGRLYQATGRFFDRTIARYGRMLGWVLDHRGLTWLVFGATLVLTVAL 579

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            +      + +   G +Q    A++ V 
Sbjct: 580 YVLVPKGFFPVQDTGTLQATTEADQSVS 607



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 89/268 (33%), Gaps = 32/268 (11%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V             N+                    +R Q          R+  ++ +  
Sbjct: 254 VRLGDVAQTVDEAENMRLAAWAGTPETGARAGVILNIRRQPGANVIETVDRLKALLPQLQ 313

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             +     +Q        I   +    I + + I  +  +I++++R      L     + 
Sbjct: 314 GTLPASIDVQVLTDRTTTIRASVKDMQIELALAIGLVVAVIFVFLR-SASATLIPSVAVP 372

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM--------KLYTT 753
           L +  T G   L G   N   + A+    G+ V+D +V+ + + +++        + +  
Sbjct: 373 LSLVGTFGVMYLAGFSINNLTLMALTISTGFVVDDAIVMIENIARHLEMPGNASAQAHGA 432

Query: 754 SISFRDL------------------IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI- 794
             S +D                      + +  +G ++ +   + I+VL   ++ G V+ 
Sbjct: 433 EGSVQDAQASGHSQNTPAPHITPLQAALAGSRQIGFTIISLTISLIAVLIPLLFMGDVVG 492

Query: 795 ---GSFAIPMAFGIVVAASSSIFIAAPI 819
                FAI MA  I+++A  S+ +   +
Sbjct: 493 RLFHEFAITMAVAILLSAVVSLTLTPML 520


>gi|85375525|ref|YP_459587.1| hypothetical protein ELI_13490 [Erythrobacter litoralis HTCC2594]
 gi|84788608|gb|ABC64790.1| hypothetical protein ELI_13490 [Erythrobacter litoralis HTCC2594]
          Length = 1156

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 159/547 (29%), Gaps = 40/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++ ++ I   G++  +   +  +    FP+                  +     
Sbjct: 12  RNPTIPLVFFTAILFAGIMAFVRMDVVNNPDIEFPAVD--------------VTIAQPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        + R+  +   + F       +   +V   +  
Sbjct: 58  APTEIENQITQRVESAVRSINGVSTINSTAREGSSNTFIEFEIGVDPNDAVIEVKNAIDS 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L     +  +         + +     + +     + S  I      ++   E   
Sbjct: 118 IRGSLPDGILEPRVSKVEISGGFLGIYAVEANDMTIE--QLSWFIDDSIAKRLLGIEGMA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  ++    D  +++    T ++++      N    G    V   R S     
Sbjct: 176 EVGRFGGVDREIEVVLDLPKMQAFGVTASQINSVLRQTNIDAAGGAAEVGGTRQSVRVLG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   E+S   +                         R         +    +      
Sbjct: 236 NTETAYELSQRQIQL--------------------GNGRTIKLADVARVRDGYSERTSIS 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +    +     S     S       A  + A + A +  +K   +    V       + 
Sbjct: 276 KVRDKEVVNFYMSRAKGASDVTVFYEALDIIAEIEAENPGVKFIPL-FNTVKYTEEQYTS 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L +IV+F  +   +  +++  +I L+ I T   + LLG  L   S+  + 
Sbjct: 335 SMAAMIEGAILAVIVVFFFLRDWRATIISAVAIPLSAIPTFWFMDLLGFNLNQLSLLALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +  ++   +   + +    
Sbjct: 395 LVAGVLVDDAIVEIENIVRHMRMGKSAYQASIDAADEIGLPVVATSFCIVAVFLPVGLMP 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F IT+ +++L+S+  A  I   +  + ++ K   +    P    ++     
Sbjct: 455 GISGQFFKNFGITVVIAVLMSLAVARMITPMLAAYFLKAKGHAAHGEGPWMDRYMNVLRW 514

Query: 539 AIQFMRA 545
           ++   + 
Sbjct: 515 SLDRGKM 521



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 78/252 (30%), Gaps = 6/252 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
              Q+ +   R + L+ V    +         +  D E       + +    V       
Sbjct: 244 SQRQIQLGNGRTIKLADVARVRDGYSERTSISKVRDKEVVNFYMSRAKGASDVTVFYEAL 303

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +I    P                +        +  + +A+++  +    W   + +
Sbjct: 304 DIIAEIEAENPGVKFIPLFNTVKYTEEQYTSSMAAMIEGAILAVIVVFFFLRDWRATIIS 363

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + L    T  F  L G   N  ++ A+  + G  V+D +V  + +   ++      S
Sbjct: 364 AVAIPLSAIPTFWFMDLLGFNLNQLSLLALALVAGVLVDDAIVEIENI---VRHMRMGKS 420

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                  + +E     V TS       LP+ +     G    +F I +   ++++ + + 
Sbjct: 421 AYQASIDAADEIGLPVVATSFCIVAVFLPVGLMPGISGQFFKNFGITVVIAVLMSLAVAR 480

Query: 814 FIAAPILLFIYD 825
            I   +  +   
Sbjct: 481 MITPMLAAYFLK 492



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 10/223 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +N  V +    G  V +      V +          +    +   +  +EL+    + V
Sbjct: 906  NQNRRVLVGADLGQGVIKGEAQAEVDQLPILQDLPQGVVRDVVGEDQWQQELVNSLFIAV 965

Query: 674  IISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I   + +   + + +K     L  +T+L+L     +    L G   ++     +L L+G 
Sbjct: 966  IAGFLLVFAVLVLLYKRLMSPLVNMTSLLLAPLGGIFLVWLVGQPQSMPVYIGILLLLGI 1025

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
               + +++ D   + M      +   + I  + ++     V T++A    ++P+A  G  
Sbjct: 1026 VSKNSILLIDFAIEEMATGRRKL---EAIVDAGHKRAQPIVMTTVAMTAGMVPIAFSGLL 1082

Query: 791  ----GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                G+        +  G++++   ++ I             +
Sbjct: 1083 GSGDGAWRAPMGTMVIGGLIMSTVLTLLIVPAGFSLADGLERR 1125


>gi|325917469|ref|ZP_08179678.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937]
 gi|325536343|gb|EGD08130.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937]
          Length = 642

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/646 (13%), Positives = 187/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATADGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +      D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AIRDDFPDDLQRFHIFKWSSSDEPVLKVRLASQTDLTGAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S                         N 
Sbjct: 172 AKVEISGAPPNEVEIAIAPDRLTAHDLSLNDLSERL-------------------GKLNF 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +   +++ +G  +            +    +      A+         +      +  G
Sbjct: 213 SVSAGQIDDNGQRIRVQPIGELRDLQELRELVL----NAKGLRLGDIAEVRLKPTRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +     + A      +RA      + I    N   A   S 
Sbjct: 269 RRLDGRPAIGLDVYKERSANLVEVSKAALKEVEDIRAEPAMRDVQIKVIDNQGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 AELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPGQPQLAALLGTRSVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     + S            
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTSDHGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G +      +            +
Sbjct: 509 ARVLAWTLAHRGWSVAGIILVSAISLVPMKLTKIDMFGGEGGNEAFIQYQWKGSYTREQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +                G +   T     VK 
Sbjct: 569 GEEIGRVENYLEANRAKYHITQIYSWFSEVEGSNTVVTFDANKVKD 614



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +    +    I+  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDIRAEPAMRDVQIKVIDNQGKAVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPGQPQLA-----ALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|320334172|ref|YP_004170883.1| acriflavin resistance protein [Deinococcus maricopensis DSM 21211]
 gi|319755461|gb|ADV67218.1| acriflavin resistance protein [Deinococcus maricopensis DSM 21211]
          Length = 1119

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/549 (12%), Positives = 145/549 (26%), Gaps = 43/549 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + + ++  +   GLL      +        P                         
Sbjct: 31  RRYVFSIGVFLAVVLFGLLATTRLGVELLPSFEVPVVAVSTP--------------YTGA 76

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V+  +    ++  S L        +    ++ + ++F +     + A+ V+  +  
Sbjct: 77  TPDQVDRDVSRQIEDAVSTLSGVSDISSTSTTGRSVVIITFTNDTDINSAANSVSQSVAA 136

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L       ++         I+              + +         ++       
Sbjct: 137 IRGALPSGSDAPIVQKFDPNAQPIITLALFGGAAP--LRDVTTYANDTIKTRLERVNGVA 194

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     Q     DP+RL     +  ++S                    +     + 
Sbjct: 195 DVTVSGGPERQAQVLLDPARLSAYNLSPNRVSGAISASALDVPAGSLTQDGNQVGFSTRT 254

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +I  I L                        AR         I      +    
Sbjct: 255 TPTSLADIGNILL----------------------DPARGLRVRDVATIRDSTEPITQYA 292

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +             +  +     +        L          I           +   
Sbjct: 293 RVNGQPAVLLGIRKGSGTNSVQVADNVRAAMREL--NLPGGYQLIAASDETTVTRATVED 350

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I    V +V+ + +           +I ++V     L SL G T  + S+  I+
Sbjct: 351 TFKEFLIGIFAVGVVVLLFLGRLNTVFAVILAIPISVSAAPLLYSLFGFTFNIISLLAII 410

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD +I+V E ++    K  S+  S+ +G S  +S +  ++ + L   + L F  
Sbjct: 411 VAIGIVVDDSIVVAENVQRYRDKGYSLMRSVLVGGSEVFSAVTAASFSLLAVLIPLSFMP 470

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F + +  +I  S   ++  +   M +    + +         R        
Sbjct: 471 GILGQFFRQFGLGLAAAIAFSWLESLLFLTVRMAYTSDPEPIDWRTYGARLRRLPDSFRW 530

Query: 539 AIQFMRARF 547
            ++  RA +
Sbjct: 531 GLRAWRAPW 539



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 84/237 (35%), Gaps = 8/237 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L+        +         +      PG    Q  V++  +        ++   ++  
Sbjct: 876  QLQQAPATLRRYNKAYTSTIDINLNPGAPGAFEYQKTVVKNARDAGLLQNGVTLGDSSSF 935

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
                ++ +L+  G V ++++ +   + +  +F  + + +  I  + L I   L   ALF 
Sbjct: 936  GASGLTGDLLFYGPVVIVLAVLLTYLVLGSQFNSFRYPVYLILPVPLAIVGALWTLALFR 995

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               ++  V  ++ L+G S  + ++  + + + +++    +   + +  S        + T
Sbjct: 996  TNLDVITVLGMVILLGLSTKNSILYLEFVVERLRV----MPLYEALVDSARLRFRPILMT 1051

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            ++   +  +P+      G        I +  G++ +   + ++   +       R  
Sbjct: 1052 TLTVLVISVPLVFGHGEGAEFRRGLGIVILGGVITSTLLTFYVIPSVFYRFERKRQP 1108



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 79/229 (34%), Gaps = 8/229 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV-PLSTIQ 652
           VR         +   Q         V L  + G      +V + V+  + E+  P     
Sbjct: 275 VRDVATIRDSTEPITQYARVNGQPAVLLGIRKGSGTNSVQVADNVRAAMRELNLPGGYQL 334

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFF 711
                   ++R  +       +I   A+ + + +       + A+   + + ++     +
Sbjct: 335 IAASDETTVTRATVEDTFKEFLIGIFAVGVVVLLFLGRLNTVFAVILAIPISVSAAPLLY 394

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           +LFG  FN+ ++ A++  IG  V+D +VV + +    +      S    +    +E    
Sbjct: 395 SLFGFTFNIISLLAIIVAIGIVVDDSIVVAENV---QRYRDKGYSLMRSVLVGGSEVFSA 451

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
               S +    ++P++      G     F + +A  I  +   S+    
Sbjct: 452 VTAASFSLLAVLIPLSFMPGILGQFFRQFGLGLAAAIAFSWLESLLFLT 500


>gi|284929229|ref|YP_003421751.1| protein-export membrane protein SecD [cyanobacterium UCYN-A]
 gi|284809673|gb|ADB95370.1| protein-export membrane protein SecD [cyanobacterium UCYN-A]
          Length = 470

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 130/470 (27%), Positives = 203/470 (43%), Gaps = 63/470 (13%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEV----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
            +    + LGLDL+GGS L +++    D  +     L+     L + +   G+    ++ 
Sbjct: 21  FLNIMPLQLGLDLKGGSQLTIQLKPTEDIKNISQEDLEAAKTVLENRVNGLGVAEPIVQT 80

Query: 94  -IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             ++KI +        E     +    Q    +     +  L                  
Sbjct: 81  LGKDKIVIQLPGVTNPEQAERVLGGTAQLDFQEQRKGTEGQLSAEFK------------- 127

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
              I       +  ++Q+   +   +               +    DP+ L       A+
Sbjct: 128 ---IRQQKNIELNTLKQKKPDLETKKRIVELVESIDVSNQAILKLFDPAGLSGKNLKNAR 184

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                       +G  + V    D++G +       +++G   +      +     PVV 
Sbjct: 185 --------YGPSQGIEWQVIIDFDNEGEEKFANLTKQVAGTGRSIGIFLDNILISAPVVS 236

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
             F                                     I  G A I+GNFT E+A  +
Sbjct: 237 PQF---------------------------------AVTGITGGSAVITGNFTAESANEM 263

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A  LR GSLP  + +VE R VGA LG DS+ +   A   GL+L+++FMIV Y   G++A+
Sbjct: 264 AVQLRGGSLPFPVEVVENRTVGATLGQDSVRRSIYATATGLILVLIFMIVYYRLSGVLAN 323

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ +   LTLA  SL+G TLTLP IAG +L IG+AVD+NILV ERIREE +  ++++  
Sbjct: 324 IALLIYAALTLACYSLIGVTLTLPGIAGFILSIGMAVDANILVFERIREELQNGKTLYTG 383

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
           ++ GF RA+S+I DSNIT LIA   LF  G G V+GFA+T+ + +LISMF
Sbjct: 384 VESGFYRAFSSILDSNITTLIACGALFSLGSGLVKGFALTLAIGVLISMF 433



 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 88/213 (41%), Gaps = 4/213 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+++ I                      G+  A++     V+ +   +     +     V
Sbjct: 225 LDNILISAPVVSPQFAVTGITGGSAVITGNFTAESANEMAVQLRGGSLPFPVEVVENRTV 284

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ +R+ I       I +LI++ + ++    + A   L++    TL  ++L G+ 
Sbjct: 285 GATLGQDSVRRSIYATATGLILVLIFMIVYYRLS-GVLANIALLIYAALTLACYSLIGVT 343

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  ++V++R+R+ ++      +    ++          + +++
Sbjct: 344 LTLPGIAGFILSIGMAVDANILVFERIREELQ---NGKTLYTGVESGFYRAFSSILDSNI 400

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
              I+   +   G  ++  FA+ +A G++++  
Sbjct: 401 TTLIACGALFSLGSGLVKGFALTLAIGVLISMF 433


>gi|109898548|ref|YP_661803.1| acriflavin resistance protein [Pseudoalteromonas atlantica T6c]
 gi|109700829|gb|ABG40749.1| acriflavin resistance protein [Pseudoalteromonas atlantica T6c]
          Length = 1040

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/639 (12%), Positives = 198/639 (30%), Gaps = 48/639 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR    + +L+  +   G+L +         L++FPS                  +  E 
Sbjct: 28  MRRPVTIGMLFLSMLLFGILAS-----QLLPLEKFPSIDIPEI---------AIRIPYEN 73

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    +E+ + +           +   +I L FA     +    +    + 
Sbjct: 74  ATPAEIEKMITRPVEEVLATMSGIKRLRSKSTEDAAEIQLQFAWDENLKAKGIEAREKID 133

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L  D ++ L+      ++ I   + + ++ +S A +    + R     I      
Sbjct: 134 AIRNNLPADVERILVYQFNTSDLPIFQLRVSSERDLSDAYDL---LERNLKIPIERVAGV 190

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      +  Q+    D  +   L  T  ++       N +     F     + +   Q
Sbjct: 191 SKVELYGVLKKQIAIRIDTQKQASLGITNTQLLSALRQANFAMTAGSFYDLEQKITINPQ 250

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  +I+ + +       D            +     R + V  +   +  + ++  
Sbjct: 251 GEFSKIEDINALIIKKGVLLSDIARIGYESPKRTEGRHLDRTYAVGFNIYRESNSNLVAV 310

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                 VIN A  S        F ++                           +   S S
Sbjct: 311 SDAVMKVINHADESPAFTGITLFVMD-----------------------DEAASVTESLS 347

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  + A L ++VL+  +      L+   S+  ++ +TL  +  +G T+ + S+ G+
Sbjct: 348 DLLNAGLLGALLSVMVLYTFLRNLTTTLIVVLSVPFSICITLGCMYFMGYTVNILSMMGL 407

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L +G+ VD+ ++V E I++E     +   +   G  +    +     T  I  +     
Sbjct: 408 MLAVGMLVDNAVVVTESIQQERNHYPNPIDATKAGVGKVSLAVIAGTTTTAIVFLPNIIG 467

Query: 481 GGGAVRGF----AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF---- 532
               +  F    AI + +S+  S+  A +++  +   +      K++     +       
Sbjct: 468 VKVNLTIFLEHVAIAICISLFASLLIAQTLIPLLTSRLSSGLSSKTVSATAQAPGMGKLA 527

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +    +  R     I++L  + +   +     +   D    + L         L+
Sbjct: 528 KQYQRVLSWSLTHRGLTCVIALLILVSTAIPMQFVTGDDDDDNNSRLWLNYDIQGNYSLA 587

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            V  +++ ++    + Q+    +            S   
Sbjct: 588 EVEKSVDKMEAYLYANQDAFQIEQVYTYFTAGEATSALT 626



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 96/262 (36%), Gaps = 16/262 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +  +  R + L +V       ++ +I              ++       A+ R+  +++
Sbjct: 773  TISRIGQRTITLDMVSETKIVPRLAEIRRSYRQTSLTIGANMEEDVTLQQAKERIENVMQ 832

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
                      T   +     +    +    ++ +      + I +   F+        IT
Sbjct: 833  YLTLPDGYSWTFDGSIDRQNQNEAVMQTNMLLAIC----MIYIVMAALFESLLLPTAVIT 888

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            +L+  +T       + G   ++ ++  +L L+G  VN+ +V+ DR+    +L    I+  
Sbjct: 889  SLLFSLTGVFWALFVTGTAMSVMSMIGMLILMGIVVNNGIVLVDRIN---QLIGQGIAIN 945

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI-------GSFAIPMAFGIVVAASS 811
              + ++    +   + T     + ++P+A  G + I          AI +  G+  + ++
Sbjct: 946  AAVIEACLTRVRPILMTVATTIVGLVPLA-LGNTSIGGDGPAYSPMAIAIIGGLTFSTAT 1004

Query: 812  SIFIAAPILLFIYDWRAKNARI 833
            S+ +     + +   RAK A +
Sbjct: 1005 SLVLVPLAYVLLLRMRAKTAHL 1026



 Score = 67.4 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 86/281 (30%), Gaps = 3/281 (1%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R     ++          +  +        +    L +     +            +   
Sbjct: 227 RQANFAMTAGSFYDLEQKITINPQGEFSKIEDINALIIKKGVLLSDIARIGYESPKRTEG 286

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                       + R       +V+   +  +     +      T+   +     ++  L
Sbjct: 287 RHLDRTYAVGFNIYRESNSNLVAVSDAVMKVINHADESPAFTGITLFVMDDEAASVTESL 346

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                 G++ + +++++           L  + ++   I  TLG     G   N+ ++  
Sbjct: 347 SDLLNAGLLGALLSVMVLYTFLRNLTTTLIVVLSVPFSICITLGCMYFMGYTVNILSMMG 406

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  +G  V++ VVV + +++    Y    +  D     + +     +  +    I  LP
Sbjct: 407 LMLAVGMLVDNAVVVTESIQQERNHYP---NPIDATKAGVGKVSLAVIAGTTTTAIVFLP 463

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             +     +  F   +A  I ++  +S+ IA  ++  +   
Sbjct: 464 NIIGVKVNLTIFLEHVAIAICISLFASLLIAQTLIPLLTSR 504


>gi|217032023|ref|ZP_03437524.1| hypothetical protein HPB128_187g50 [Helicobacter pylori B128]
 gi|298736301|ref|YP_003728827.1| acriflavine resistance protein AcrB [Helicobacter pylori B8]
 gi|216946333|gb|EEC24939.1| hypothetical protein HPB128_187g50 [Helicobacter pylori B128]
 gi|298355491|emb|CBI66363.1| Acriflavine resistance protein (AcrB) [Helicobacter pylori B8]
          Length = 1028

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGVMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVMNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKRIQAISPNY-EIRPFLDTTSYIRTSIEDVKFDLILG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKLGMEFM 540



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   V 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 39.7 bits (90), Expect = 2.3,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K+I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKRI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       ++ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|163733886|ref|ZP_02141328.1| acriflavin resistance protein D [Roseobacter litoralis Och 149]
 gi|161392997|gb|EDQ17324.1| acriflavin resistance protein D [Roseobacter litoralis Och 149]
          Length = 1054

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/560 (13%), Positives = 160/560 (28%), Gaps = 35/560 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++    M    G +        +  +   P       +                  
Sbjct: 10  RPIAVMAAVIMAVLFGTIAV-----SRIPIQLAPDVRKPIVV---------IETQWPGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +E    L+   I     R  + +ITL F            V+  L  V
Sbjct: 56  PSEIEREIVNPQEEALRGLEGLDIMTSRSRTGEAEITLEFGVGTDMVQSLLLVSNRLDRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
               +   +  L  +  +      +     +            +     D+I   E    
Sbjct: 116 GDYPDEASEPTLDTSGADDSPIAWILLTAQEGNTREMPTYGDFVEDVIQDRIERIEGVSA 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  +L    DP RL +   T  ++       N S           R     +  
Sbjct: 176 VNVFGGVTRELQVVVDPRRLSRFDLTVPEVVRVLRDENISLSAGDVEEGKRRYVVRAEGN 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +     I  + L                       G+ R       ++            
Sbjct: 236 LNTVEAIKSVVLRSDIG----------------TGGSGRVRVADVADVSFAFEEANSRLR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLR--AGSLPIKLNIVEERNVGADLGSDS 360
                        +   +   T+     + A L     +                 G+  
Sbjct: 280 FRGEPGLAFNIVREPGANVIETMAEVKEVLAELSAGPVAEAGLNMRQAYDETVYINGAID 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           +      I   L   VL   +   +  LV   +I ++++ T   ++  G TL + S+AGI
Sbjct: 340 LVTQNIWIGGALAAAVLMAFLRSPRATLVVSLAIPVSIVSTFVAMAATGRTLNVISLAGI 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +G+ VD+ I+V E I     + +S   +  +G  + +  I  S +T ++  V +   
Sbjct: 400 AFAVGMIVDAAIVVLENIYRLREEGKSRREAAYLGAKQVWGAILVSALTTVLVFVPILIM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R  A+ + +S+L+S+  A++++ A+   ++     K I+I  L         
Sbjct: 460 QLEAGQLFRDIAVAISVSVLLSLVVAVTVIPALASKLLSKGDQKKINIWGLDHLAHGFHG 519

Query: 538 IAIQFMRARFWGVGISILFS 557
           + + ++R       + +   
Sbjct: 520 LVMSYVRLTVRFRALGLFMV 539



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 84/261 (32%), Gaps = 13/261 (4%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
             R + V      +            + G    G +++  +A+         S L     
Sbjct: 224 GKRRYVVRAEGNLNTVEAIKSVVLRSDIGTGGSGRVRVADVADVSFAFEEANSRLRFRGE 283

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
             ++F         ++        +  +  + E+    + E          E V    + 
Sbjct: 284 PGLAFNIVREPGANVI-----ETMAEVKEVLAELSAGPVAEAGLNMRQAYDETVYINGAI 338

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           +L+ + I   I  A+A  + +         L     + + I  T    A  G   N+ ++
Sbjct: 339 DLVTQNIW--IGGALAAAVLMAFLRSPRATLVVSLAIPVSIVSTFVAMAATGRTLNVISL 396

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A +   +G  V+  +VV + +    +L     S R+       +  G  + +++   +  
Sbjct: 397 AGIAFAVGMIVDAAIVVLENI---YRLREEGKSRREAAYLGAKQVWGAILVSALTTVLVF 453

Query: 784 LPMAVW---GGSVIGSFAIPM 801
           +P+ +     G +    A+ +
Sbjct: 454 VPILIMQLEAGQLFRDIAVAI 474



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 87/246 (35%), Gaps = 10/246 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                G   +   + + + +S +   + +    +I  ++        VR         A  
Sbjct: 780  TQDIGNYPVVTPSGQIIPVSALADVVVTAGPTEIRHRDRLRTVTLEVRPSDALALEEAVE 839

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             +   V   + E    + ++ +         +      + + ++ I + + + I F+ + 
Sbjct: 840  LLQSEVIDVLEESGLPNGVRMSVSGTADQLSQTWEAIQINLAVALIIVFLVMAILFESFV 899

Query: 692  FALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              L  + ++ +     +G  AL         +   +   + L+G  VN+ +++    +  
Sbjct: 900  LPLVIMISVPVAAAGGVGGLALLNTFQTQPLDTLTLLGFIILVGIVVNNAILIVH--QTL 957

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
              L    +S  D I+++    +     +++ +   +LP+ V+   G  +       +  G
Sbjct: 958  FHLREEGMSPIDAIEEATRNRIRPIFMSTLTSVCGMLPLVVFPGEGSELYRGLGAVVVGG 1017

Query: 805  IVVAAS 810
            + ++A 
Sbjct: 1018 LSMSAF 1023


>gi|85717297|ref|ZP_01048251.1| Acriflavin resistance protein [Nitrobacter sp. Nb-311A]
 gi|85695886|gb|EAQ33790.1| Acriflavin resistance protein [Nitrobacter sp. Nb-311A]
          Length = 1040

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/622 (10%), Positives = 157/622 (25%), Gaps = 45/622 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +   G L           +   P                     L   
Sbjct: 9   RRPIATSLLGIALMIGGAL-----GYWALPVSALPQVDFPTVQ---------VRTQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   L    +     +        +     ++I+L F   R  +     V   +  
Sbjct: 55  SPDVVASLLTAPLERQLGQIPSLSSMTSTSSFGLSQISLQFNLDRDIDGATQDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +     +        + V++   +          S         ++       
Sbjct: 115 AAGILPKNLPYPPVYAKVNPADAPVMT-LALTSDTVSLRAMSDIADTILTQRLSQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +  + D +RL     +   +       N S             +     
Sbjct: 174 RVSVLGGLKPAVRVQADLARLAAYGISMEDLRTAIANANVSGPKGSLDGAQQAYTIAAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            I                 I   L     G 
Sbjct: 234 QITTA--------------------DAYKPIIIAYRNGSPVTIGDVARIVDGLENDRTGG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    +         +++      +  V          S   
Sbjct: 274 WYNGTPAVVIDIQRQPGANVIEVVRKIREEIPKVQSAIPAGVMLTVVSDRTVTIRASVHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV +V+ + +   +  L+A  ++ L+++ +  ++   G +L   S+  + 
Sbjct: 334 VQFTLILSIVLVTLVVLLFLRSLRATLIAGVALPLSLVTSFGIMYFAGFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +G G  VD  I++ E I       +SV  +   G S    T+    ++ +   + L F  
Sbjct: 394 IGTGFVVDDAIVMIENIVRHIENGESVMQASLRGASEIAFTVISLTVSLIAVFIPLLFMS 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-------KKMKSIDINPLSRF 531
              G   R FA+T+ ++++ S   ++++   M   +++            +++ +     
Sbjct: 454 GLVGRMFREFALTLTIAVVTSAVVSLTLTPMMCSRLLKRSGGGVSVPGAAAVNRSIDRLV 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    +       R   V +        +  +        +     I     A   V  
Sbjct: 514 ALYHWTLLWVLRHQRATLVLVFATIVATMLLYVVAPKGFLPLQDTASITAVTEAGPDVSF 573

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
           + +R     +        +  G
Sbjct: 574 AEMRRRQAEVAGAIEEDSDVTG 595



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSLRATLIAGVALPLSLVTSFGIMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      S      +  +E     +  +++     +P+    G V      FA+ +   
Sbjct: 411 VRHIENGESVMQASLRGASEIAFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
           +V +A  S+ +   +   +    
Sbjct: 471 VVTSAVVSLTLTPMMCSRLLKRS 493



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 66/182 (36%), Gaps = 6/182 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +E VK   T I   S I            + +      ++ + I + I + + +
Sbjct: 817 EALGDAVERVKTIETRIGMPSNIVGVFSGDAAEFSKSLAGQPWLILAALITIYIVLGVLY 876

Query: 689 KWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           + Y     I + +    I   L    LFG + ++  +  ++ L+G    + +++ D   +
Sbjct: 877 ESYIHPITILSTLPSAGIGAILALM-LFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALE 935

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
                   +S  D I ++        + T++AA    LP+A+           P+   I+
Sbjct: 936 --AERRQGMSSTDAIVQACLLRFRPIMMTTLAALFGALPLAI-ESGTGSELRFPLGISII 992

Query: 807 VA 808
             
Sbjct: 993 GG 994


>gi|319786980|ref|YP_004146455.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465492|gb|ADV27224.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 1027

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 93/667 (13%), Positives = 202/667 (30%), Gaps = 54/667 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+  +  IGL+ AL   L        P                   L  +  
Sbjct: 9   RRPVTTIMLFVSMVVIGLIAALRLPLEAEPEATIPFFF--------------VWLPYDGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             + +   +    +E  S +               +I + F+D +R     A +    + 
Sbjct: 55  TPEEIERNVLRPVEEALSTMPGIRSMNSRANADSAQIQVEFSDWNRDIAIAASEARERID 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +L  D ++  +   T  +   +  + + ++       ++  I +    ++      
Sbjct: 115 AIRDQLPDDFRRYYVYRWTTSDREAMSLRLDSEE---DLTSRADLIEQVIKRRLERVPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +         +L    D  RL        ++       N S               G +
Sbjct: 172 ARIQVEGVASQELLVALDKDRLSAHGVALNELVQRLQAANFSVSAGQI------TEAGRR 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+ + E+                 + V  +    +  R         +      +   
Sbjct: 226 LRVQPRGEL-----------------QEVQALRDLPVNNRGVRLSDVAEVSLQPQRMNYV 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL-NIVEERNVGADLGSD 359
           R L            +   +      +      +LR       +   V +    A   S 
Sbjct: 269 RKLDGRPSVAVDIFKERAANLVDLSRSVRKEIEVLREDPAMRGIGIEVIDDQGQAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      AI   L +IVL+  + +    L+   +I +   +TL  +   G TL + S+ G
Sbjct: 329 AALAEAGAIGLALSVIVLYGFLRHWPSTLMVSLAIPICFAMTLGFMYFAGITLNIISMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  K       +  +G       +    +   +  + + 
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQEQEKYPGRQALASIIGTRHVAIALSAGTLCHCVVFLPML 448

Query: 479 FFGGGAVR----GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F     +       A+T+ +S+L S   AIS++  +   +     +KS  I+ L   +  
Sbjct: 449 FGEKNIISIYLGQLAVTISVSLLASWLVAISLIPMLSARMKTPPAVKSPLISRLQSRYAN 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFT-------HGLNYGIDFKGGIQLGVLANR 587
                +Q       G+    L SI  I    +         +N    +KG      +   
Sbjct: 509 ALRWTLQHRGWSVAGIVFITLASIVPIINARSGGDDSSPDEINIFYQWKGAYSKEEMGRE 568

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              +    +        D  +  +  +     RL     DS   +++ E ++K + +   
Sbjct: 569 VARVEAFINANREEFKVDRVYSRYSEQGWASTRLYLTIDDSELSSQIQEKIRKGLPQSAR 628

Query: 648 LSTIQNT 654
                  
Sbjct: 629 ARIGLGW 635



 Score = 90.9 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/260 (16%), Positives = 95/260 (36%), Gaps = 10/260 (3%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
               V A   V++ ++            S Q     +  L        D         + +
Sbjct: 750  SFMVRAPNGVEVPLLAMVDVGFNPSATSIQRL-NRQTMLKVESGVAKDVSVADARKAIEE 808

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
                   P       +     I+ + + + ++ + I+ + ML+ +   F+   F +  ++
Sbjct: 809  SLKAVQFPPGYGYTFDSGSFNINFDGMNQMLMAIAIALVLMLVIMAAVFESMLFPVAIMS 868

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             ++  I      F + G E N+ AV  +L L+G  VN+ +V+ + +     L    +   
Sbjct: 869  CVLFSIFGVYWLFWITGTEMNIMAVIGILVLMGVVVNNGIVMIEHIN---NLRRRGMPRT 925

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFGIVVAASSSI 813
            D + +   E L   + T   A ++++P+A+      G       A  +A G+  +   S+
Sbjct: 926  DALVEGSRERLRPIMMTMGTAILAMIPIALNTQTVDGMPPYYPMARAIAGGLAFSTVVSL 985

Query: 814  FIAAPILLFIYDWRAKNARI 833
                 I   + D R   +R+
Sbjct: 986  LFLPTIYAILDDLRTGTSRL 1005



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 66/165 (40%), Gaps = 9/165 (5%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + ++   +++Y ++R  W   L     + +    TLGF    GI  N+ ++  +L  +G
Sbjct: 336 AIGLALSVIVLYGFLRH-WPSTLMVSLAIPICFAMTLGFMYFAGITLNIISMMGLLLAVG 394

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF--ISVLPMAVW 789
             V++ VVV + + +  + Y    +   +I      T   ++  S        V    ++
Sbjct: 395 MLVDNAVVVVESIYQEQEKYPGRQALASII-----GTRHVAIALSAGTLCHCVVFLPMLF 449

Query: 790 GGSVIGSFAIP-MAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           G   I S  +  +A  I V+  +S  +A  ++  +         +
Sbjct: 450 GEKNIISIYLGQLAVTISVSLLASWLVAISLIPMLSARMKTPPAV 494



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 54/532 (10%), Positives = 141/532 (26%), Gaps = 60/532 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +++  W V     I    ++       P             + I++    +G        
Sbjct: 514 LQHRGWSVAGIVFITLASIV-------PIINARSGGDDSSPDEINIFYQWKG-------- 558

Query: 61  DEDDFVNGFLQMYSDELRSFLK------KEGIGVFSMRQIQ---NKITLSFADSRFKENI 111
               +    +      + +F+       K         +      ++ L+  DS     I
Sbjct: 559 ---AYSKEEMGREVARVEAFINANREEFKVDRVYSRYSEQGWASTRLYLTIDDSELSSQI 615

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
            +K+   L   +++  +            + +S  L  ++   +   A +    + R   
Sbjct: 616 QEKIRKGLPQ-SARARIGLGWPGSSGNQNQGVSFSLIGDSSQTLEELAADIVPLLNRNEN 674

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            +    +       +     +L    D  R      +  +++ +         G      
Sbjct: 675 LRDVRVD-------TGDANTELSVRVDRERAAAYGFSAQQVAEYV--------GMALRGS 719

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
            LRD   +   +   V  +G              +      SF               + 
Sbjct: 720 SLRDFHRDNVEIPVNVRFAGAE-----------HYGVEDLASFMVRAPNGVEVPLLAMVD 768

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                               + SG A+         A   +                   
Sbjct: 769 VGFNPSATSIQRLNRQTMLKVESGVAKDVSVADARKAIEESLKAVQFPPGYGYTFDSGSF 828

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                G + +       +  +++I+  +         +       ++     L  + G  
Sbjct: 829 NINFDGMNQMLMAIAIALVLMLVIMAAVFESMLFPVAIMSCV-LFSIFGVYWLFWITGTE 887

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           + + ++ GI++ +G+ V++ I++ E I    R+      +L  G       I  +  TA+
Sbjct: 888 MNIMAVIGILVLMGVVVNNGIVMIEHINNLRRRGMPRTDALVEGSRERLRPIMMTMGTAI 947

Query: 472 IATVVLF-----FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           +A + +        G       A  +   +  S   ++  +  +   +   +
Sbjct: 948 LAMIPIALNTQTVDGMPPYYPMARAIAGGLAFSTVVSLLFLPTIYAILDDLR 999


>gi|319649853|ref|ZP_08004004.1| cation efflux system [Bacillus sp. 2_A_57_CT2]
 gi|317398433|gb|EFV79120.1| cation efflux system [Bacillus sp. 2_A_57_CT2]
          Length = 1078

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 88/637 (13%), Positives = 191/637 (29%), Gaps = 43/637 (6%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV-LEVDEDDFVNGF 69
             ++  +G +  +        L   P   P            G  +        D V   
Sbjct: 1   MFLVLILGAVSLM-----NIPLKLIPDLNPPV----------GVVVTSYPGASPDEVVEK 45

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E  + L        + ++  N I + F+ +   + I ++V   L    ++L  +
Sbjct: 46  VTKPLEENLATLPGIKTLTSTSQESANFILMQFSWTTDIDEIQNEVIQRLDQ--TQLPDE 103

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
             K   +     +  I+    + D+        +     Q   ++   +       S   
Sbjct: 104 ADKPRFMKFDPAQFPIIQLSLSADEEPEALRRLA----EQLNLELTKVKGVASVNLSGTA 159

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + ++  E D  +LR    + A +       N S  G                ++ +  E+
Sbjct: 160 IKEVRVELDQEKLRDFKLSQADVVDVIESNNISMPGDP--------------VLTEGKEL 205

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           +   ++   +    K     V       G +   E   +            R   +P + 
Sbjct: 206 TTRIISSIDSLETLKKLTVTV---DPATGDKVSLEDISEVQLASQDDRTITRTNQSPSVL 262

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
            ++       +   + +    L  +L         + +          +      +  + 
Sbjct: 263 LSVLQQSDANTAEVSNQFIQKLDDLLEKEQFENIESEILFDQGDYIKLAIGNISNSLILG 322

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
               +IVLF  +   K  L+   SI  +VI T  L+     TL + ++ G+ LGIG+ VD
Sbjct: 323 GAFAMIVLFFFLKNVKSPLIIGISIPYSVIFTFVLMYFSNFTLNIMTLGGLALGIGMLVD 382

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VR 486
           ++I+V E I       +    +   G       I  S +T +   + + F  G      +
Sbjct: 383 NSIVVIENIYRHLSMGKDPKTAASDGAKEVGGAITASTLTTVAVFLPVVFITGIIGELFK 442

Query: 487 GFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
            FA+T+  S+  S+  A+++V  +    +   K               +   I       
Sbjct: 443 EFALTISFSLFASLAVALTVVPMLASRLLKSPKVNIETKRQESGLMRSLEKSIKWSLRNR 502

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
                   +L +  S  +            +G   + +       LS     + +L+   
Sbjct: 503 AVVIAITMLLLAAGSFGMTTLGTQFLPNTDEGFFTVRMELENGTALSETEKVISALEEEL 562

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
              +  D   + +   Q           + E+  K  
Sbjct: 563 KDEEEVDTYVSLIGTTQEGSFRGSKNANIAELYIKMK 599



 Score = 98.6 bits (243), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 96/242 (39%), Gaps = 7/242 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ +++ G+         +   V+   +   S     + + V K+I ++      +   
Sbjct: 766  SDVTNIERGEGPVNIQRINQQDAVQFTLKYKSSTNMGAMSKAVDKEIADLDLPDETEIVF 825

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                ++    I   I+  +++ I + + +  +F+   + L  + T+ L +          
Sbjct: 826  SGDRELLESSIDDLILAFVLAIIFIYLVMAAQFESLKYPLVIMFTVPLMVIGVAIALTAT 885

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                +LTA+  ++ L G  VN+ +V+ D +    +     +   D I  S+ +     + 
Sbjct: 886  QTPISLTAIIGIIVLAGIVVNNAIVIVDYIN---QKKEIGLKTYDAIIISVKDRARPILM 942

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++   + ++P+A+    G  +     I +  G++ +   ++F+   +  F      +  
Sbjct: 943  TALTTILGLVPLALGLGEGTEINQPMGIALIGGLISSTFLTLFVIPVVYSFFDKDTRRLN 1002

Query: 832  RI 833
            ++
Sbjct: 1003 KM 1004



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 81/254 (31%), Gaps = 12/254 (4%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               V L  +     + Q      +        L  LQ    ++   +         + E
Sbjct: 230 TGDKVSLEDISEVQLASQDDRTITRTNQSPSVLLSVLQQSDANTAEVSNQFIQKLDDLLE 289

Query: 645 IVPLSTIQNTEIVGPKISREL-IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                 I++  +       +L I      +I+     +I ++   K     L    ++  
Sbjct: 290 KEQFENIESEILFDQGDYIKLAIGNISNSLILGGAFAMIVLFFFLKNVKSPLIIGISIPY 349

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T           N+  +  +   IG  V++ +VV + +    +  +     +    
Sbjct: 350 SVIFTFVLMYFSNFTLNIMTLGGLALGIGMLVDNSIVVIENI---YRHLSMGKDPKTAAS 406

Query: 763 KSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               E  G    +++      L  + + G  G +   FA+ ++F    +  +S+ +A  +
Sbjct: 407 DGAKEVGGAITASTLTTVAVFLPVVFITGIIGELFKEFALTISF----SLFASLAVALTV 462

Query: 820 LLFIYDWRAKNARI 833
           +  +     K+ ++
Sbjct: 463 VPMLASRLLKSPKV 476


>gi|317181922|dbj|BAJ59706.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori F57]
          Length = 1026

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/568 (11%), Positives = 157/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +    +     +   +       +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKKTIKPMLQKIDGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILVNANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESYYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     +     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKIGMEFM 540



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ +  + + + + +   ++        + T+ L  +       L     ++ ++  ++ 
Sbjct: 854  LIALATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLIL 913

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+
Sbjct: 914  LIGMVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLAL 970

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 971  ASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1017



 Score = 38.9 bits (88), Expect = 3.5,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|296444433|ref|ZP_06886398.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
 gi|296258080|gb|EFH05142.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
          Length = 1034

 Score =  139 bits (350), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 69/517 (13%), Positives = 148/517 (28%), Gaps = 43/517 (8%)

Query: 2   RNNPWLVILYSMICCIGL--LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           R      ++  +I  +GL  L+ LP        +     +       G D          
Sbjct: 9   RRPVLASVVSLLILVMGLRSLVTLPTLQYPRTQNA---VVTVTTSYFGAD---------- 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V GF+    +   +          + +   + IT +   +        +++  +
Sbjct: 56  ---PATVAGFVTTPLENAIAQANGIDYLTSTSQVGTSTITANLRLNYDSGKALTEISTKI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V ++L    ++ ++     +    +    N D + S  +  +  +IR    ++     
Sbjct: 113 DSVLNQLPSAVQRPVITVKIGQTTDAMYIGFNSDILTSSQV--TDYLIRVVQPRLQSVPG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        L    DP +L     T +++S                        GN
Sbjct: 171 VQTAELIGGKTFALRAWLDPVKLAAYGLTASELSAAL--------------------QGN 210

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
            Y+         +     TA     + +   ++   ++           N+         
Sbjct: 211 DYIAGLGSTKGEMVQVTLTAATSMHSLEEFRNLVVKQVSGANVKLRDVANVTLGSEDYES 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                               +    ++        +         + +          S 
Sbjct: 271 SVAFNGKKAVYIGILVAPNANLLDVVKGVKDAYPDILKSLPQGLNSEIVYDTTEFVNSSI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      +V  V+FM +   +  ++   +I L+++ T  +L  LG ++ L ++  
Sbjct: 331 DEVVHTLIEAILIVTGVVFMFLGSWRSVVIPIVAIPLSLVGTFTILLALGFSINLLTLLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IGL VD  I+V E +          F +           I    I  +   V + F
Sbjct: 391 LVLAIGLVVDDAIIVVENVNRHLADGLKPFDAALQAARELAGPIIAMTIVLIAVYVPIGF 450

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            G   G     FA T+  S+ +S   A+++       
Sbjct: 451 QGGLTGALFVEFAFTLAGSVTVSAIIALTLSPVSCAL 487



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/176 (12%), Positives = 67/176 (38%), Gaps = 11/176 (6%)

Query: 663  RELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDIT--KTLGFFALFGIE 717
            + +       V      ++I++ +      +   L  + ++ + I            G  
Sbjct: 842  QFVQESSGFAVTFGFALIIIFLALAAQFESFRDPLIILVSVPMSIAGALVFIMLGFGGAS 901

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             N+     ++TL+G      +++ +   +      +  +  + I ++ +  L   + T+ 
Sbjct: 902  INIYTQVGLVTLMGLISKHGILIVEFANEQQH---SGKTKYEAIIEATSIRLRPILMTTA 958

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            A  + VLP+ +    G +   +  + +A G+ +    ++F+   + L +    +K+
Sbjct: 959  AMVLGVLPLIMATGAGAASRYNMGLVIASGLSIGTLFTLFVLPAVYLVLAADHSKH 1014



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/189 (15%), Positives = 72/189 (38%), Gaps = 9/189 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                 + K + + +    + +T         E++   I  ++I    + +++     W 
Sbjct: 300 KDAYPDILKSLPQGLNSEIVYDTTEFVNSSIDEVVHTLIEAILIVTGVVFMFLG---SWR 356

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  I  + L +  T       G   NL  + A++  IG  V+D ++V + +    +  
Sbjct: 357 SVVIPIVAIPLSLVGTFTILLALGFSINLLTLLALVLAIGLVVDDAIIVVENVN---RHL 413

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVA 808
              +   D   ++  E  G  +  ++      +P+   G   G++   FA  +A  + V+
Sbjct: 414 ADGLKPFDAALQAARELAGPIIAMTIVLIAVYVPIGFQGGLTGALFVEFAFTLAGSVTVS 473

Query: 809 ASSSIFIAA 817
           A  ++ ++ 
Sbjct: 474 AIIALTLSP 482


>gi|319943264|ref|ZP_08017547.1| multidrug RND efflux transporter [Lautropia mirabilis ATCC 51599]
 gi|319743806|gb|EFV96210.1| multidrug RND efflux transporter [Lautropia mirabilis ATCC 51599]
          Length = 1026

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/515 (11%), Positives = 134/515 (26%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+L           +   P                     L    
Sbjct: 10  RPIATSLLMVALLVAGMLA-----WRLLPVAALPQVDYPVIQ---------VQATLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +        +     + ITL FA           V   L   
Sbjct: 56  PDTVARMITAPLERYLGQISGLKQMSSASGAGVSVITLQFALDSDLGVAEQDVQSALDNA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + +L+   +        +    +  +   ++   +   Q
Sbjct: 116 ESLLPDGMPAPPRYRKVNPADTPILT-LAVSSKTLPLPQIHDLVDTRMAQKLAQVQGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + D + L+    T A +       N +     F       +      
Sbjct: 175 VSLAGGQRPAIRVQADSAALKAAGLTLADVQKVIASANANLPKGSFDGPVRSTTLDANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                      D+                 + +          
Sbjct: 235 LTTVAQ--------------------YEDLVVTWKNGVPLRVRDVATVVQGPEDRFLAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A          +   +     +    L   L A         +      +   S    
Sbjct: 275 ADAERAILISVQRQPDANVIEVADRVRALLPRLTATLPASVDVRILTDRTESIRSSVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +  GLV++V  + +   +  L+    + ++++ T A + L   +L   S+  + +
Sbjct: 335 QVELVLAVGLVVLVTLVFLRSVRMTLIPAVVVPISLVATFAAMYLADYSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     + +    +   G      T+    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVMMENIARHREQGKPALQAALDGAKEIGFTLVSLTVSLVAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G     FA+T+ ++I IS+  ++++   M   +
Sbjct: 455 VVGRLFHEFAVTLAVAIGISLLVSLTLTPMMSARM 489



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + +  T     L     N  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSVRMTLIPAVVVPISLVATFAAMYLADYSLNNLSLMALTIATGFVVDDAIVMMENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +                 E     V  +++    ++P+   G   G +   FA+ +A  
Sbjct: 411 ARHREQGKPALQAALDGAKEIGFTLVSLTVSLVAVLIPLLFMGDVVGRLFHEFAVTLAVA 470

Query: 805 IVVAASSSIFIAA 817
           I ++   S+ +  
Sbjct: 471 IGISLLVSLTLTP 483



 Score = 45.5 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L                +     L +  G+  +    +  V++   ++    +I++  
Sbjct: 788  SALAHWSNRKAPVVVNHQSQFPAATLSFNLGNGHSLGDAVAAVEEVQQQLGWPLSIESRF 847

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALF 714
            +   +  R  +   +  V+ + + M + + I ++     +  ++TL       L    + 
Sbjct: 848  LGAAEAFRASLSNTLWLVLAAVVVMYLVLGILYESAIHPITILSTLPSATVGALLALLVS 907

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ AV  ++ LIG    + +++ D   +  +    S          +       + 
Sbjct: 908  GRALDMVAVIGIVLLIGLVKKNGIMMVDFALEAERHERLSARAAIHRAAILR--FRPILM 965

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++AA +  LP+ +    G  +     + M  G++V+   +++    I LF      +  
Sbjct: 966  TTLAALLGALPLMLASGSGAELRQPLGLVMVGGLLVSQVLTLYTTPVIYLFFERIAQRRG 1025

Query: 832  R 832
            R
Sbjct: 1026 R 1026


>gi|239617983|ref|YP_002941305.1| protein-export membrane protein SecD [Kosmotoga olearia TBF 19.5.1]
 gi|239506814|gb|ACR80301.1| protein-export membrane protein SecD [Kosmotoga olearia TBF 19.5.1]
          Length = 501

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 93/244 (38%), Gaps = 4/244 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            + A++            ++ + D                    G           +   
Sbjct: 243 DITASKSGLPENDIKKRLAIVLDDKVIIAPIVSSTISDGKAVIEGLQTIDEAREIAILVS 302

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +       N  ++ P + +++I   +   +   + ++IY+ + +     L A   L+
Sbjct: 303 SGNLPVELKPFNKRVLSPTLGKDIITSALWAGLAGLVIIMIYMVLVYGL-MGLVADVALL 361

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            +     G  AL G    L  +A ++  IG +V+  +++++R+++ +++     +  + +
Sbjct: 362 YNSLLLFGMLALTGSILTLPGIAGIILTIGMTVDGNILIFERIKEELRV---GKTPENAV 418

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           D + N+        ++   ++ L +  +G   +  FA+ +  G++ A  +++  +  +L+
Sbjct: 419 DSAFNKVFWTIFDANLTTILAGLVLLYFGTGTVKGFAVTLIIGVLGAMFTNLVASRTMLV 478

Query: 822 FIYD 825
            +  
Sbjct: 479 GMAG 482



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 216/488 (44%), Gaps = 62/488 (12%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGF---LQMYSDELRSFLKKEGIGVFSMRQIQ 95
           +  + I LGLD++GG+ L   +  D              + LR  L   G    ++ ++ 
Sbjct: 37  LITSNIRLGLDIKGGALLEYALVTDTPKEEQSTIADRVVEVLRKRLDAAGFTEATVEKVV 96

Query: 96  NKIT-----------LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
             I+           +        E     V    +   +         +L   T     
Sbjct: 97  ASISFGEEVPSVRVRVQIPGITDIEKAEKLVGQTGKLYFAD--------VLAIETSDATP 148

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE-STIQRLGSHRILIQLPGEQDPSRLR 203
            + S    +        Q +E    +    G  E     R+         P      R  
Sbjct: 149 GMPSGMAYEISKLKL--QGVEPFWTKSFHYGKIENGVENRIWY----YISPKINIGGRYV 202

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           +L G+T   +   V P        F V    + DG     +     SG            
Sbjct: 203 ELDGSTITDAKALVNPRPQPGQGKFMVSLEFNRDGRDTFRDITASKSG------------ 250

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
                                +  ++I K LA+VLD +V+ AP+++  I  GKA I G  
Sbjct: 251 ---------------------LPENDIKKRLAIVLDDKVIIAPIVSSTISDGKAVIEGLQ 289

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           TI+ A  +A ++ +G+LP++L    +R +   LG D I     A +AGLV+I+++M+++Y
Sbjct: 290 TIDEAREIAILVSSGNLPVELKPFNKRVLSPTLGKDIITSALWAGLAGLVIIMIYMVLVY 349

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
           G  GLVAD ++  N +L   +L+L G+ LTLP IAGI+L IG+ VD NIL+ ERI+EE R
Sbjct: 350 GLMGLVADVALLYNSLLLFGMLALTGSILTLPGIAGIILTIGMTVDGNILIFERIKEELR 409

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             ++   ++D  F++ + TIFD+N+T ++A +VL +FG G V+GFA+T+ + +L +MFT 
Sbjct: 410 VGKTPENAVDSAFNKVFWTIFDANLTTILAGLVLLYFGTGTVKGFAVTLIIGVLGAMFTN 469

Query: 504 ISIVRAMM 511
           +   R M+
Sbjct: 470 LVASRTML 477


>gi|163867434|ref|YP_001608631.1| AcrB/AcrD/AcrF multidrug efflux protein [Bartonella tribocorum CIP
           105476]
 gi|161017078|emb|CAK00636.1| AcrB/AcrD/AcrF multidrug efflux protein [Bartonella tribocorum CIP
           105476]
          Length = 1045

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/484 (11%), Positives = 140/484 (28%), Gaps = 29/484 (5%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + ++  +    ++  S +        +    ++++ ++F         A  +   L 
Sbjct: 70  ASAETIDREVTKVIEDAVSRVSGVKTISSTSAFGRSRVQINFNVGVDLNVAASDIRDALS 129

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  +    L++       +++     +   I    + +  +  Q +D I   +  
Sbjct: 130 RIAYSLPKNADVPLIIKADSNAAAMMY--LVVTSPIMSIDDLTTVVDDQIVDAISAVDGV 187

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                          + D ++L     T A +S                           
Sbjct: 188 GDVQVDSARTKIFQIDIDQAKLASYGLTVADISRVLADMTTDVPVGSLRNSKQTLVVRAT 247

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +        + L                                  ++     +    
Sbjct: 248 ARLTTPESFEQVVLKPH------------------------VHLGDVAHVTLSPDLETVI 283

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            KAQ +          +   L++         V   +      +  
Sbjct: 284 LRINGKTGIGLGIVRKAQSNTLNISAGVRAVVDNLKSVIPSSVNIDVISDDAIFIKSALH 343

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    I    V++V+F+ +   +  L+   S+ + +I T+A + L+G +L + +  G+
Sbjct: 344 EVEVALVISILSVILVIFLFLRDIRVTLIPAVSLPVALIGTIAAIYLVGFSLNILTFLGL 403

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  GL VD  I+V E I            +  +G    +  +  + +T +   V + F 
Sbjct: 404 VLATGLVVDDAIVVLENIVRWRNMGLGSRAAAVLGTREVFFAVVATTLTLVAVFVPISFL 463

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R F   + +SIL+S   A+++   +    ++    +  +       FL    
Sbjct: 464 PGQVGGLFREFGFVLAISILLSSIVALTLCPMLASRFLKEPIEEEEEKAHHHFTFLYKLG 523

Query: 538 IAIQ 541
               
Sbjct: 524 SLFH 527



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 88/252 (34%), Gaps = 11/252 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+    V L  V     S  +  +  +        L  ++    +++  +  +  V   
Sbjct: 258 QVVLKPHVHLGDVAHVTLSPDLETVILRINGKTGIGLGIVRKAQSNTLNISAGVRAVVDN 317

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTL 700
           +  ++P S   +         +  + +  V ++IS +++++ I          L    +L
Sbjct: 318 LKSVIPSSVNIDVISDDAIFIKSALHEVEVALVISILSVILVIFLFLRDIRVTLIPAVSL 377

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L G   N+     ++   G  V+D +VV + +   ++     +  R  
Sbjct: 378 PVALIGTIAAIYLVGFSLNILTFLGLVLATGLVVDDAIVVLENI---VRWRNMGLGSRAA 434

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
                 E     V T++      +P++   G V      F   +A  I+    SSI +A 
Sbjct: 435 AVLGTREVFFAVVATTLTLVAVFVPISFLPGQVGGLFREFGFVLAISIL---LSSI-VAL 490

Query: 818 PILLFIYDWRAK 829
            +   +     K
Sbjct: 491 TLCPMLASRFLK 502



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 70/165 (42%), Gaps = 7/165 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++   I+ + +L+ +  +F+ +      + T+ L I   +    L G+  N+ +   ++ 
Sbjct: 869  MIVFGIAFVIILLVLAAQFESFISGFIIMATVPLGIGCAVIAMLLSGVSLNIYSQIGLIL 928

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ +      +L     S R+ ++++ N  L     T + A +  +P+ +
Sbjct: 929  LIGVMAKNGILIVEFA---DQLRDQGRSVREAVEEAANIRLRPVCMTMICAILGGIPLVL 985

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                G     +    +  G+ +A   ++++   + LF+  +    
Sbjct: 986  AKGAGAEARIALGWVIVGGLGLATIFTLYVTPVVYLFLGRFIRSK 1030


>gi|261839564|gb|ACX99329.1| acriflavine resistance protein (acrB) [Helicobacter pylori 52]
          Length = 1028

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/568 (11%), Positives = 155/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +    +     +   +       +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKKTIKPMLQKIDGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQVRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILVNANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTSYIRTSIEDVKFDLILG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
              IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SLGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKLGMEFM 540



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 75/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A T + E++ +                   +        G   + 
Sbjct: 799  NRQRSVTVLAEPNRNAGTSLGEILTQVSKNTKEWLVEGANYRFAGEADNAKESNGEFLIA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019


>gi|210134809|ref|YP_002301248.1| cytoplasmic pump protein of the HefABC efflux system HefC
           [Helicobacter pylori P12]
 gi|210132777|gb|ACJ07768.1| cytoplasmic pump protein of the HefABC efflux system HefC
           [Helicobacter pylori P12]
          Length = 1028

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGVMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTSYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIISIAVVLVFVGSLFVASKLGMDFM 540



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   + 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLIA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPSYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|54027460|ref|YP_121702.1| hypothetical protein nfa54860 [Nocardia farcinica IFM 10152]
 gi|54018968|dbj|BAD60338.1| putative membrane protein [Nocardia farcinica IFM 10152]
          Length = 1126

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 67/499 (13%), Positives = 147/499 (29%), Gaps = 59/499 (11%)

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG---LAVD 429
           V ++LF I        +      L VI    ++  L     + S  G V+ +    LA+D
Sbjct: 196 VAVLLFFIFGGLVAAGLPLVVGGLTVIGANGIIMALTKFTEVNSFVGGVVSMIGLGLAID 255

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
             + +  R REE  +      ++      A  T+  S    + +   +  F  G ++  A
Sbjct: 256 YGLFIVSRFREELAEGYDTPAAVRRSVMTAGRTVVFSATMIVASLGGMLLFPQGFLKSVA 315

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKM---KSIDINPLSRFFLIPDCIAIQFMRAR 546
                ++ ++  TAI+I+ AM+  +     M   K       +                R
Sbjct: 316 YGTIATVTLAALTAITILPAMLGVLGPRVDMLGLKRFRKTKTAEEVENGFWGKTTQWVMR 375

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDF--------------------------KGGIQ 580
                   +  +  + ++    L +G                                  
Sbjct: 376 HPLKIAVPICIVLLLLIIPVKNLAFGGINERYLPPDNKTRVALENFYEVFPLKKTDPVQL 435

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV-RLQYQPGDSVAQTRVLEMVK 639
           + V  +     +V +   E+  +               V R      DS      ++ ++
Sbjct: 436 VMVSEDSAAVGAVWKQASEAPGLVGSFEVPSRSTTQPDVYRTSATLEDSENANPTIDYLR 495

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
                      +     +       L+ +  + + +      + +++ F      + A  
Sbjct: 496 SMDVPDSVQLYVGGQPTIQKDSIDALLERMPLMIALVLFVTTLLMFLTFGSLVLPIKAAL 555

Query: 699 TLILDITKTLGFFALFGIE--------------FNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              L +  TLG      ++               +   V  +  + G S + +V +  RM
Sbjct: 556 MSALGLGSTLGILTWIFVDGHGSGLLNFTPQPIMSPVLVLIIAVIYGLSTDYEVFLLSRM 615

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +     +   S  + +      T GR +  +    + V+    +         + M   
Sbjct: 616 VE---ARSMGASTTEAVRAGTAHT-GRIITAAALILLVVVGAFAFSD-------LVMMQY 664

Query: 805 IVVAASSSIFIAAPILLFI 823
           I     +++FI A IL  +
Sbjct: 665 IAYGLIAALFIDATILRML 683



 Score = 81.7 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 77/221 (34%), Gaps = 13/221 (5%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            +K     +     +     R    VK           +   + V   ++  +       
Sbjct: 129 DKKYTFASIAIVGDNDTDMVRNYRKVKDVFYIPGVDVQVTGLQAVAGTLNDTMASDQKRM 188

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG----FFALFGIEFNLTAVAAVLT 728
            +++  A+ + ++  F    A G    L++     +G      AL       + V  V++
Sbjct: 189 ELLAIPAVAVLLFFIFGGLVAAG--LPLVVGGLTVIGANGIIMALTKFTEVNSFVGGVVS 246

Query: 729 LIGYS--VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS-VLP 785
           +IG    ++  + +  R R+ +            + +S+  T GR+V  S    ++ +  
Sbjct: 247 MIGLGLAIDYGLFIVSRFREELAE---GYDTPAAVRRSV-MTAGRTVVFSATMIVASLGG 302

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           M ++    + S A      + +AA ++I I   +L  +   
Sbjct: 303 MLLFPQGFLKSVAYGTIATVTLAALTAITILPAMLGVLGPR 343


>gi|195940956|ref|ZP_03086338.1| multidrug efflux system subunit MdtB [Escherichia coli O157:H7 str.
           EC4024]
          Length = 467

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 44/479 (9%), Positives = 118/479 (24%), Gaps = 35/479 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 19  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 65  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLSLDVAEQEVQAAINAA 124

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 125 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAMPMTQVEDMVETRVAQKISQVTGVGL 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +       N +                    
Sbjct: 184 VTLAGGQRPAVRVKLNAQAIAALGLTSETIRTAISSANVNSAKGSLDGPT---------- 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V +S      +   +          +                 + +       G  
Sbjct: 234 --RAVTLSANDQMQSADEYRQ--------LIIAYQNGAPIRLGDVATVEQGAENSWLGAW 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S +  
Sbjct: 284 ANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLVESLPKSVSVKVLSDRTTNIRASVTDT 343

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      L+   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 344 QYELMLAIALVVMIIYLFLRNVPATLIPAVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 403

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
             G  VD  I+V E I     K +    +   G      TI     + +   + L F G
Sbjct: 404 ATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 462



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 59/184 (32%), Gaps = 9/184 (4%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----- 666
              K   + +  Q           + ++  + ++V       +  V    +  +      
Sbjct: 283 WANKQQAIVMNVQRQPGANIIDTADSIRTMLPQLVESLPKSVSVKVLSDRTTNIRASVTD 342

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + I+ + M+IY+++R      L     + L +  T           N   + A+
Sbjct: 343 TQYELMLAIALVVMIIYLFLR-NVPATLIPAVAVPLSLVGTFAVMVFLDFSINNLTLMAL 401

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G+ V+D +VV + +    +             K   E     +  + +    ++P+
Sbjct: 402 TIATGFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPL 458

Query: 787 AVWG 790
              G
Sbjct: 459 LFMG 462


>gi|162452758|ref|YP_001615125.1| protein-export membrane protein SecD [Sorangium cellulosum 'So ce
           56']
 gi|161163340|emb|CAN94645.1| protein-export membrane protein SecD [Sorangium cellulosum 'So ce
           56']
          Length = 717

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/278 (16%), Positives = 107/278 (38%), Gaps = 6/278 (2%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
               S   L    ++      G  +   +  R V        L+         Q   G  
Sbjct: 443 LPDQSEGGLGGWYVSMDFTPTGADRFEDITGRNVKRRFAI-ILDEKVESAPVIQTKIGGG 501

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              + +  Q  D   Q      +  +   +    +  N + +GP + ++ I++ + G I 
Sbjct: 502 RAQITMGSQNPDQQLQDARKLELVLRSGALPAPISPSNEQRIGPSLGKDAIQQSMKGAIA 561

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S + +++++ + +     L A   +I ++   +   A+FG    L  +A ++  +G +V+
Sbjct: 562 SGLLVVVFMVVIYS-RAGLIADIAVIFNLILQVAVLAMFGASMTLPGIAGLVLTMGIAVD 620

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             V++ +R+R+ ++      S R  +D   ++     +   +   IS L +A +G   I 
Sbjct: 621 ANVLINERIREELR---NGKSPRAAVDIGYDKAFSAILDGHVTTLISGLILAQYGTGPIK 677

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            FAI +  GI ++  + + +   ++        K   +
Sbjct: 678 GFAITLIVGIAISLFTGV-VCTRLMFDWAVRGRKIKTL 714



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 53/341 (15%), Positives = 103/341 (30%), Gaps = 32/341 (9%)

Query: 47  GLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKE--------------------GI 86
           GLDL+GG  LV  VD D+ ++     Y D+LR+ L K                      +
Sbjct: 144 GLDLKGGLRLVYTVDVDEAISDKRDRYYDDLRAALAKSFGFHEGDKPPTIEEMQKLQTKL 203

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            +   R+  + I ++F D    E I D+                   L  +   +     
Sbjct: 204 RIEKSREQADTIAITFNDPADSEKINDEFLAKFLHEL---------QLQRSADRRVAKFR 254

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP-SRLRQL 205
           +       +   A+ Q+ E + +R+D +G+ E+++       I+     ++   + +R++
Sbjct: 255 IRDEVSSNIRERAVSQAKETVLRRVDGLGLKEASVSTRDEDVIIEVPGDDEAAFTTIREI 314

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD-GNQYLVEDKVEISGIHLNGATANFDPK 264
           +  TA++ F  V  +      +       D   G  + +E+     G       A     
Sbjct: 315 ISQTARLEFKMVDDDQDFFEPIARSAKEEDLPKGLTFSIENAPVGPGKTKPVHFARMVRA 374

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
            H+ + D            +V  DN      +        A              +   T
Sbjct: 375 EHEEMRDTLKRLREWVGTLQVPADNEIGFGKLYEYDEEKDAIEEIGWRTYFLFSKAEI-T 433

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
            +      A+       +    V                G 
Sbjct: 434 GDMVRDAQALPDQSEGGLGGWYVSMDFTPTGADRFEDITGR 474


>gi|320528877|ref|ZP_08029969.1| protein-export membrane protein SecD [Selenomonas artemidis F0399]
 gi|320138507|gb|EFW30397.1| protein-export membrane protein SecD [Selenomonas artemidis F0399]
          Length = 413

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 149/413 (36%), Positives = 236/413 (57%), Gaps = 27/413 (6%)

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +      +  L       + +        QV   A+ + + I+ +R++ +G++E  I
Sbjct: 17  AFVQPLASSIRQGLDLQGGTHVVLEAVDTEQAQVNDDAMNRVVAIMEKRVNSLGLTEPII 76

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           QR G  R++I+LPG +DP    + +G TA + F                           
Sbjct: 77  QREGERRVIIELPGIKDPDAAIRTIGKTAMLEFRDED----------------------- 113

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++G  L  A A+ +P+T + VV++ F + GA++F ++T  N+G+ +A++LDG 
Sbjct: 114 ---GNTVLTGTDLKDAQASTNPQTGQNVVNLEFSDEGAQKFADLTMRNVGRTIAILLDGE 170

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           VLTAP + + I  G+A+I+G  T+E A  LA +LR+G+LP+K+ I+E R VG  LG DS 
Sbjct: 171 VLTAPNVREPILGGRAEITGQKTLEEAQNLAVVLRSGALPVKVEIIETRTVGPTLGQDSK 230

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K   A   GL  +VLFMI+ Y   G +AD ++    IL L +L L+ ATLTLP +AGI+
Sbjct: 231 DKSEFAFAVGLGAVVLFMILFYHLSGFIADVALMAYTILLLGILYLMDATLTLPGVAGII 290

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+AVD+N+L+ E  +EE +    S+  ++D GF RA++TIFDSN+T LIA  VLFF 
Sbjct: 291 LSIGMAVDANVLIFEHFKEEYQVQHKSLRLAMDAGFKRAFTTIFDSNVTTLIAAGVLFFL 350

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           G G +RGFAIT+G+  ++SMFTAI++ + ++  +I  K  ++  +   + F L
Sbjct: 351 GTGTIRGFAITLGVGTILSMFTAITLTQYLLKLMINAKISENPAMYGANGFML 403



 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 67/166 (40%), Gaps = 3/166 (1%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++   K      +   A+++++ + +       A   L+      LG   L    
Sbjct: 222 GPTLGQDSKDKSEFAFAVGLGAVVLFMILFYHLS-GFIADVALMAYTILLLGILYLMDAT 280

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  VA ++  IG +V+  V++++  ++  ++     S R  +D            +++
Sbjct: 281 LTLPGVAGIILSIGMAVDANVLIFEHFKEEYQVQHK--SLRLAMDAGFKRAFTTIFDSNV 338

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              I+   +   G   I  FAI +  G +++  ++I +   +L  +
Sbjct: 339 TTLIAAGVLFFLGTGTIRGFAITLGVGTILSMFTAITLTQYLLKLM 384



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 80/256 (31%), Gaps = 28/256 (10%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-VDED--DF 65
           ++ ++   IG+  A    L  S             I  GLDL+GG+H+VLE VD +    
Sbjct: 4   LVIAVAVIIGVFFAFVQPLASS-------------IRQGLDLQGGTHVVLEAVDTEQAQV 50

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNS 124
            +  +      +   +   G+    +++    ++ +     +  +     +         
Sbjct: 51  NDDAMNRVVAIMEKRVNSLGLTEPIIQREGERRVIIELPGIKDPDAAIRTIGKTAMLEFR 110

Query: 125 KLN----------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID-Q 173
             +           D + +    T +  +++  S     +     +      I   +D +
Sbjct: 111 DEDGNTVLTGTDLKDAQASTNPQTGQNVVNLEFSDEGAQKFADLTMRNVGRTIAILLDGE 170

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +  + +  + +   R  I      + ++   ++  +  +     +      G   G    
Sbjct: 171 VLTAPNVREPILGGRAEITGQKTLEEAQNLAVVLRSGALPVKVEIIETRTVGPTLGQDSK 230

Query: 234 RDSDGNQYLVEDKVEI 249
             S+    +    V +
Sbjct: 231 DKSEFAFAVGLGAVVL 246


>gi|170738773|ref|YP_001767428.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
 gi|168193047|gb|ACA14994.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
          Length = 1039

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/519 (12%), Positives = 154/519 (29%), Gaps = 35/519 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                + RFP+                  +         +   +  + ++  + +K    
Sbjct: 31  FRTLPITRFPNIDVPLV---------SVSINQPGAAPSELQTQVTKWVEDAVAGVKGVKH 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++ +  +  T+ F      +   + V   +  +   L    ++ ++       + I+
Sbjct: 82  ITSAITEGNSATTVEFRLEVNTDRAVNDVKDAIAKIRMNLPRTIEEPIINRVEIAGLPIM 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   +   +     + S  +      QI              +  ++     P RL  L 
Sbjct: 142 IYGASAPAMTPE--DLSWFVDDVVARQIQGLRGVGGVERLGGVNREVRVTLKPDRLLSLG 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A ++    L +    G    +     S            ++   +            
Sbjct: 200 ITAADVNRQLRLTSADMAGGRAELGGQEQSIRTLAASASLDTLAATSIVLP--------- 250

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                      G R+        +            L    +     S  +  S     +
Sbjct: 251 -----------GGRKVRLDDLATLTDGAEEPRVFARLNGEPVVAFAISRASGASDASVAQ 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA    ++ ++++        G+           A L ++V+F+ +   + 
Sbjct: 300 LVARKIDELRAAHPNVRFDLIDTSVTNTI-GNYESAMHGLMEGAALAVLVVFLFLRDWRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+A  ++ L+V  T   +S +G +L   S+  I L  G+ VD  I+  E I    R  +
Sbjct: 359 TLIAAVALPLSVFPTFWAMSAMGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHVRLGK 418

Query: 447 SVFCSL---DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
           S + +          A   I  + +        +    G   + F +T+  ++ +S+  A
Sbjct: 419 SPYRAAIEGADEIGLAVIAITATLVAIFAPVSFMGGIAGQYFKQFGLTIAAAVFMSLLVA 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             I   M  + +R    +     P+ R +      +++ 
Sbjct: 479 RLITPMMAAYFMRDHGHEEETPGPVMRTYTRVVAWSVRH 517



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 87/255 (34%), Gaps = 7/255 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +        +V  + +  + +G         ++   V L+     S A    +       
Sbjct: 758  LKVPTKTGAAVPLTAVADISLGRGPTAIDRYDRAVRVALEANLQGSDALAEAIAKALATP 817

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
                    +   +    ++  E+     + +    + +L  + + F  +   L  + +L 
Sbjct: 818  AAKTLPPGVALRQTGDAEVMGEVFEGFALAMGAGLMMVLGVLILLFGSFLQPLTILFSLP 877

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   +    +F    ++  V  +L L+G    + +++ D   + M      +     I
Sbjct: 878  LSIGGAILGLLIFNRPISMPVVIGILMLMGVVTKNAIMLVDFAVEEMA---RGVDRITAI 934

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +  +     V T++A    ++P A+    GG      AI +  G++V+   S+     
Sbjct: 935  TDAGRKRARPIVMTTIAMAAGMVPSAMALGIGGEFRSPMAIAVISGLIVSTLLSLLFVPA 994

Query: 819  ILLFIYDWRAKNARI 833
            I + + D      R+
Sbjct: 995  IFVLMDDLARLFVRL 1009



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 73/234 (31%), Gaps = 7/234 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L         F   +GE      +    G S A    L   K         +   +  
Sbjct: 261 ATLTDGAEEPRVFARLNGEPVVAFAISRASGASDASVAQLVARKIDELRAAHPNVRFDLI 320

Query: 656 IVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +       + G++  +A+A+L+       W   L A   L L +  T    +  
Sbjct: 321 DTSVTNTIGNYESAMHGLMEGAALAVLVVFLFLRDWRATLIAAVALPLSVFPTFWAMSAM 380

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N  ++ A+  + G  V+D +V  + +   ++      S      +  +E     + 
Sbjct: 381 GFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHVRLGKSPYRAAIEGADEIGLAVIA 437

Query: 775 TSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +        P++  G   G     F + +A  + ++   +  I   +  +   
Sbjct: 438 ITATLVAIFAPVSFMGGIAGQYFKQFGLTIAAAVFMSLLVARLITPMMAAYFMR 491


>gi|309811442|ref|ZP_07705228.1| export membrane protein SecD [Dermacoccus sp. Ellin185]
 gi|308434589|gb|EFP58435.1| export membrane protein SecD [Dermacoccus sp. Ellin185]
          Length = 617

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 107/516 (20%), Positives = 207/516 (40%), Gaps = 40/516 (7%)

Query: 45  SLGLDLRGGSHLVLEVDEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITL 100
            LGLDL GG  +VLE          +  ++   D +R+ +   G     +    +  I +
Sbjct: 60  KLGLDLEGGRTVVLEPVVTGGKSVNSSQVKQAVDIIRNRVDATGTSEAEVTTLGEKDIVV 119

Query: 101 SFADS---RFKENIADKVTLFLQGVNS------------KLNVDPKKNLLVTTTEKEISI 145
           S   +   +  ++++    L  + V +            +L      +          + 
Sbjct: 120 SIPGNPSQQVLDSLSRSSQLNFRAVIAAAQGSTTGTSPYRLPEVVNPSNAAKNGAPGSAS 179

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQI-------GISESTIQRLGSHRILIQLPGEQD 198
               ++     S +   S        D++       G + ++    G+ ++         
Sbjct: 180 ASPSSSASASGSASSSASSSPSSSSKDRLPAAFKTAGPANASDPAWGNEKVDSVWVKAGI 239

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-- 256
            +            +        +          +   +GN+ L+   VEI G  L    
Sbjct: 240 ATPSTTYNQLLQLYACTPAYQEVAAAAPDNKPTVMCAKEGNEKLLLGPVEIKGSQLTDAS 299

Query: 257 ---ATANFDPKTHKPVVDISFDEMGARRFFEVTR-----DNIGKPLAVVLDGRVLTAPVI 308
               T     +T +  V++S +  G      VTR     +      A+V+DG+ ++AP +
Sbjct: 300 SGLDTNQQGNQTGEVAVNLSLNGSGKTALANVTRRVAPLEQPRNRFAIVVDGQSISAPTV 359

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              +  G+A+I+G FT  +  +LA  L+ G+LP+    +    V   LGSD + KG  A 
Sbjct: 360 QAPLTDGQAKITGGFTESSGKLLADSLKFGALPMSFKELTSDQVSPQLGSDQLTKGLIAG 419

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGI 424
             G  L+VL+ ++ Y   GLV   S+ +   +T   ++LL       L++  + G+++ I
Sbjct: 420 AIGFGLVVLYSLIQYRALGLVTVASLLVAAAMTYLAVTLLGSLNNFRLSMAGVTGLIVAI 479

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+  DS I+  ER+R+E R  + +  +++ G++RA  TI  S+    +A  VL+      
Sbjct: 480 GITADSFIVYFERVRDEVRAGRPLRAAVETGWTRAKRTIIISDAVNFLAAAVLYVLSEST 539

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           V+ FA T+GL+ +I +   +     ++  + R K  
Sbjct: 540 VKAFAFTLGLTTIIDIVVVMFFTHPVLALLARTKFF 575



 Score =  105 bits (260), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 75/191 (39%), Gaps = 8/191 (4%)

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           K   +        ++ V P++  + + KG++   I    +++Y  I+++    L  + +L
Sbjct: 387 KFGALPMSFKELTSDQVSPQLGSDQLTKGLIAGAIGFGLVVLYSLIQYR-ALGLVTVASL 445

Query: 701 ILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           ++    T     L G       ++  V  ++  IG + +  +V ++R+R  ++       
Sbjct: 446 LVAAAMTYLAVTLLGSLNNFRLSMAGVTGLIVAIGITADSFIVYFERVRDEVRA---GRP 502

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            R  ++          + +    F++   + V   S + +FA  +    ++     +F  
Sbjct: 503 LRAAVETGWTRAKRTIIISDAVNFLAAAVLYVLSESTVKAFAFTLGLTTIIDIVVVMFFT 562

Query: 817 APILLFIYDWR 827
            P+L  +   +
Sbjct: 563 HPVLALLARTK 573


>gi|224371883|ref|YP_002606049.1| NolG [Desulfobacterium autotrophicum HRM2]
 gi|223694602|gb|ACN17885.1| NolG [Desulfobacterium autotrophicum HRM2]
          Length = 1037

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 97/686 (14%), Positives = 201/686 (29%), Gaps = 50/686 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I   G++      L +  +   P                    V     
Sbjct: 10  RPVTTAVMVILIVLFGVI-----GLTRLPVQLAPDTDLPEIE---------VQTVWSGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++    L+       S       ITL+F      +    +V+  L  V
Sbjct: 56  PTDMESEVVEKQEDKLKSLQNLQKMESSSYNDYATITLTFDLETDIDTALFRVSNKLNEV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +   +   +  L  +    +  I +    I    +  +        +    +   E    
Sbjct: 116 DEYPDNVMRPVLSSSGGSSQPIIWMVMKTIKGKDTAILTHRTFFENEIRQYLERIEGVSS 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L       QL    DP R+ Q   T  ++       N      + G+            
Sbjct: 176 LLVFGGTEDQLEVIIDPERMTQRGITINQIISKITTANRDVSAGVLGIDRKNYRIRTVA- 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                             F        V +  D +      +V   +IG     V   + 
Sbjct: 235 -----------------KFQNDQDPLDVVVYDDGIKRVFLRDVATASIGHEPQFVSVMQD 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
               ++        A +        A +        +                L S    
Sbjct: 278 GREGIVVGVRKEKGANVIDIVDRVRAEVNRLNNDVLASRNLFIDWAHDEAPYILTSIDNM 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K    I   L ++VL + +   +  +    +I ++ I T   L LL   L + S+AGI  
Sbjct: 338 KTNVMIGGVLAIVVLLIFLGSLRSTITIGLAIPISAIGTFIFLWLLHRNLNVVSLAGISF 397

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
            +G+ VD++I+V E I  + +  + +F ++  G +  +  +  S +T +   + + F   
Sbjct: 398 AVGMLVDNSIVVLENIDRQLQTGKKIFDAVLHGANEVFGAVVASTLTTVAVFLPVIFIKQ 457

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRFFL 533
             G   +  AI +  SI++S+  +++++ + M F+ + +K         +       F L
Sbjct: 458 EAGQLFKDIAIAITASIVLSLLVSVTVIPSFMHFLYKNRKLSSGSGKPGLTKALGGFFVL 517

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ--LGVLANRPVDL 591
               ++  F +     +   I+F+  SI   +          +G     + +L   P   
Sbjct: 518 RIMSVSNFFQKNVLTRLVCIIVFTSLSITSAWVLMPKAEYLPQGNQNFIMTILVPPPGYS 577

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV-------AQTRVLEMVKKKITE 644
           +  R  +              G+ N  +        S        + T   E   K+   
Sbjct: 578 AQKRREVGEYLFEQTDKYRKPGDHNLPLIKNMFYFSSDFLSGFGLSATEEYETEAKRFIP 637

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGI 670
            +         + G  I   +   GI
Sbjct: 638 ALNRIINSLPGMFGISIQPGIFESGI 663



 Score = 80.9 bits (197), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 86/256 (33%), Gaps = 12/256 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+ +  +    +R    +    +  F +   +    + +  +         +++ V+ +
Sbjct: 245 VVVYDDGIKRVFLRDVATASIGHEPQFVSVMQDGREGIVVGVRKEKGANVIDIVDRVRAE 304

Query: 642 ITEIVPLSTIQNT------EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           +  +                   P I   +       +I   +A+++ +         + 
Sbjct: 305 VNRLNNDVLASRNLFIDWAHDEAPYILTSIDNMKTNVMIGGVLAIVVLLIFLGSLRSTIT 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
               + +    T  F  L     N+ ++A +   +G  V++ +VV + +    +   T  
Sbjct: 365 IGLAIPISAIGTFIFLWLLHRNLNVVSLAGISFAVGMLVDNSIVVLENI---DRQLQTGK 421

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
              D +    NE  G  V +++      LP+       G +    AI +   IV++   S
Sbjct: 422 KIFDAVLHGANEVFGAVVASTLTTVAVFLPVIFIKQEAGQLFKDIAIAITASIVLSLLVS 481

Query: 813 IFIAAPILLFIYDWRA 828
           + +    + F+Y  R 
Sbjct: 482 VTVIPSFMHFLYKNRK 497



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/228 (9%), Positives = 72/228 (31%), Gaps = 11/228 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               L                ++     +     +  I            +        ++
Sbjct: 812  NIRLEITPPVSVPLQTAIETIKSTCDNLLASGEIKNISLDLGGNADKLVDTFDALKWNLL 871

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI-----EFNLTAVAAVLT 728
            ++ +   + +   F+ + + L  + ++ L     L    L          ++  +   + 
Sbjct: 872  LALMITYLLMAALFENFLYPLIIMFSVPLAAAGGLAGLRLVDAYIAPQPLDVLTMLGFII 931

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG  VN+ +++  +   N++     +     I +S+   +     ++  +   ++P+ +
Sbjct: 932  LIGTVVNNAILIVHQSLNNVR--NREMDGMRAISESVRTRIRPIFMSAFTSIFGLMPLVL 989

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G  +       +  G+ V+   ++F+   +L F   +      +
Sbjct: 990  ATGSGSELYRGIGSVLLGGLAVSTVFTLFVIPALLAFFIGFEKSRVAV 1037


>gi|240140733|ref|YP_002965213.1| efflux transporter, AcrB/AcrD/AcrF family protein [Methylobacterium
           extorquens AM1]
 gi|240010710|gb|ACS41936.1| efflux transporter, AcrB/AcrD/AcrF family protein [Methylobacterium
           extorquens AM1]
          Length = 1046

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 63/519 (12%), Positives = 154/519 (29%), Gaps = 35/519 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                + RFP+                  +         +   +  + ++  + +K    
Sbjct: 31  FRALPITRFPNIDIPIV---------SVTVTQSGAAPSELQTQVTKWVEDSVAGVKGVKH 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            + ++ +  +  T+ F     ++   + V   +  +   L     + ++       + I+
Sbjct: 82  ILSTISEGSSITTIEFRLEVNQDRAVNDVKDAISKIRINLPRTIDEPIISRVEIAGLPIM 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   +   +     + S  +      Q+   +          +  ++     P RL  L 
Sbjct: 142 IYGASAPAMTPE--DLSWFVDDVVARQLQGVKGVGGVERLGGVAREIRVTLKPDRLLALG 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A ++    L +    G    +     S            +    +            
Sbjct: 200 ITAADVNRQLRLTSADMAGGRGELAGGEQSIRTLGASASLETLGATSIVVP--------- 250

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                      G R+       ++                 +     S     S      
Sbjct: 251 -----------GGRKVRLDELASLMDAAEEPRTFARFNGEPVVGFAISRAMGASDAEVAV 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L A +  ++ ++++   V    G+           A L +IV+F+ +   + 
Sbjct: 300 AVAKRIEDLHAENPGVRFDLIDTSVVNTI-GNYHSAMMGLLEGAALAVIVVFLFLRDWRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+A  ++ L+V+ T  ++S LG +L   S+  I L  G+ VD  I+  E I    R  +
Sbjct: 359 TLIAAVALPLSVLPTFWVMSALGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHMRMGK 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTA 503
           S + +           +     T +     + F     G   + F +T+  ++ +S+  A
Sbjct: 419 SAYRAALEAADEIGLAVIAITATIIAIFAPVSFMPGIAGQYFKQFGLTIAAAVFVSLLVA 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             I   +  + +R           + R +      +++ 
Sbjct: 479 RLITPLLAAYFLRDHGPDHEREGLVMRAYTRLVAWSVRH 517



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 82/224 (36%), Gaps = 7/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V ++     S A   ++E V            +   +    ++  E+     + +
Sbjct: 789  DRTVRVAVEGDLQGSDALGSIIEQVMALPAATNLPEGVTIRQTGDAEVMGEVFEGFALAM 848

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L I   +    +F +  ++  V  +L L+G 
Sbjct: 849  GAGLMMVFGVLVLLFGNFLQPLTILFSLPLSIGGAILGLLVFHMPISMPVVIGILMLMGV 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAIEEMA---RGVDRVTAIVDAGRKRARPIVMTTIAMAAGMVPSALALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG      A+ +  G++V+   S+     I L + D      R+
Sbjct: 966  GGEFRAPMAVAVIGGLIVSTGLSLVFVPAIFLLVDDLSRLFVRL 1009



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 75/252 (29%), Gaps = 6/252 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G   + V   R V L  + S +++ +      +            +            + 
Sbjct: 243 GATSIVVPGGRKVRLDELASLMDAAEEPRTFARFNGEPVVGFAISRAMGASDAEVAVAVA 302

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
              + +    P       +              +  +  +A+A+++       W   L A
Sbjct: 303 KRIEDLHAENPGVRFDLIDTSVVNTIGNYHSAMMGLLEGAALAVIVVFLFLRDWRATLIA 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L +  T    +  G   N  ++ A+  + G  V+D +V  + +   ++      S
Sbjct: 363 AVALPLSVLPTFWVMSALGFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHMRMGKS 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                 ++ +E     +  +        P++      G     F + +A  + V+   + 
Sbjct: 420 AYRAALEAADEIGLAVIAITATIIAIFAPVSFMPGIAGQYFKQFGLTIAAAVFVSLLVAR 479

Query: 814 FIAAPILLFIYD 825
            I   +  +   
Sbjct: 480 LITPLLAAYFLR 491


>gi|126736694|ref|ZP_01752433.1| acriflavin resistance protein D [Roseobacter sp. CCS2]
 gi|126713809|gb|EBA10681.1| acriflavin resistance protein D [Roseobacter sp. CCS2]
          Length = 1054

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/574 (13%), Positives = 165/574 (28%), Gaps = 35/574 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++    M    G L      L Q  +   P       +                  
Sbjct: 10  RPVAVIAAVLMAVLFGALA-----LTQIPIQLAPDVRKPIVV---------ISTSWPGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +E    L    I     R  + ++TL FA           V+  L  V
Sbjct: 56  PSEIEREIVNPQEETLRGLDGLEIMTSRSRTGEAEVTLEFAIGTDMSQSLLLVSNRLDRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                   +  L  +  +      +     +            +     D++        
Sbjct: 116 GGYPAEANEPTLNTSGADDSPIAWVLITAAEGNTRSIPSYGDFLEDIVKDRVERIPGVAA 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  +L    DP RL +   T  ++       N S           R     +  
Sbjct: 176 VNVFGGVTRELQVVVDPQRLSRFGLTVPEVVQRLRAENISISAGDVDEGKRRYVVRTESN 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  +  I  + L                       G  R       ++            
Sbjct: 236 LNTEEAIRNVVLRSDAT----------------NGGTGRVRVSDVADVAFEYKEATARLR 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIET--AGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        ++  +    +E   A +        +    +            G+  
Sbjct: 280 FKGEPGLAFNVVRESGANVITVMEEFRAMLADLQAGPVADQGLIMDQVYDETIYIEGAID 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           +      I   L  ++L + +   +  ++   SI ++++ T  +++  G TL + S+AGI
Sbjct: 340 LVTQNIYIGGALAALILMLFLRSPRAVVIISLSIPVSIVATFVVMAATGRTLNVISLAGI 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +G+ VD+ I+V E I     K  S   +  +G  + +  I  S +T ++  V +   
Sbjct: 400 AFAVGMIVDAAIVVLENIYRLREKGYSRREAAYLGAKQVWGAILVSALTTVLVFVPILIM 459

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R  A+ + +S+L+S+  A++++ A+   ++R    K+I I  +         
Sbjct: 460 QLEAGQLFRDIAVAISVSVLLSLVVAVTVIPALASRLLRRDDQKAIGIWGIDHLARGFRE 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
           + + ++R       I IL               +
Sbjct: 520 LVMAYVRMTVRFRTIGILMVAVIAGGAAVASWTF 553



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 51/131 (38%), Gaps = 6/131 (4%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I  A+A LI +         +    ++ + I  T    A  G   N+ ++A +   +G  
Sbjct: 347 IGGALAALILMLFLRSPRAVVIISLSIPVSIVATFVVMAATGRTLNVISLAGIAFAVGMI 406

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
           V+  +VV + +    +L     S R+       +  G  + +++   +  +P+ +     
Sbjct: 407 VDAAIVVLENI---YRLREKGYSRREAAYLGAKQVWGAILVSALTTVLVFVPILIMQLEA 463

Query: 791 GSVIGSFAIPM 801
           G +    A+ +
Sbjct: 464 GQLFRDIAVAI 474



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 86/246 (34%), Gaps = 10/246 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                G   +     + V +S +   + +    +I  +         VR         A  
Sbjct: 780  TQDVGNYPVVTPNGQIVPVSALADVMLTAGPTEIRHRERLRTVTLEVRPADNLPLEQAVE 839

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             +   V   + E    + I+ +         +      + ++++ I + + + I F+ + 
Sbjct: 840  LLETQVVAVLEEQGIPNDIRLSVSGTADQLSQTWSAIQINLVVALIIVFLVMAILFESFV 899

Query: 692  FALGAITTLILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              L  +  + +     +G  A+  +      ++  +   + L+G  VN+ +++    +  
Sbjct: 900  LPLVIMIAVPVAAAGGVGGLAVLNLYQTQPMDMLTLLGFVILVGIVVNNAILIVH--QTL 957

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
              L    +   D I+++    +     +++ +   +LP+ V+   G  +       +  G
Sbjct: 958  FHLRDEGMDPVDAIEEATRNRIRPIFMSTLTSVCGMLPLVVFPGEGSELYRGLGAVVVGG 1017

Query: 805  IVVAAS 810
            + ++A 
Sbjct: 1018 LSMSAF 1023


>gi|325913799|ref|ZP_08176158.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937]
 gi|325539874|gb|EGD11511.1| cation/multidrug efflux pump [Xanthomonas vesicatoria ATCC 35937]
          Length = 1046

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 62/540 (11%), Positives = 141/540 (26%), Gaps = 38/540 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IG++  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGVMCYLRLGVAALPNIQIPVIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + + F   R  ++ A  V   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSMVFMVFQSDRNIDSAAQDVQTAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      D     A E           ++       
Sbjct: 115 AQSDLPSGLGTPMYQKANPNDDPVIAIALTSD--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +     
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIVAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 AVAKAAD-------------------FAQLAISTQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LRA   P                S   
Sbjct: 274 WFDGKPAVVMYAFTRAGANIVETVDQVKAQIPELRAYLQPGTKLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQATLMISLAMVVLTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E +     +      +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDDAIVVIENVMRHLDEGMPRLEAALAGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + + +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSAHTAPENPSRFGAWLDRMHERM 513



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 66/152 (43%), Gaps = 9/152 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 338 LMISLAMVVLTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           + V+D +VV + +   M+     +   +       E +G ++ +  A+ ++V    ++  
Sbjct: 398 FVVDDAIVVIENV---MRHLDEGMPRLEAALAGARE-IGFTIVSITASLVAVFIPMLFAS 453

Query: 792 SVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
            +I      F + +   IVV+   S+ +   +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPAL 485


>gi|325281148|ref|YP_004253690.1| acriflavin resistance protein [Odoribacter splanchnicus DSM 20712]
 gi|324312957|gb|ADY33510.1| acriflavin resistance protein [Odoribacter splanchnicus DSM 20712]
          Length = 1028

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/681 (11%), Positives = 198/681 (29%), Gaps = 33/681 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++   +C +G++        +   D FP         L +DL+ G        
Sbjct: 9   KYPVSVLMITLGVCLLGIIS-----YNKLGTDLFPDLKNPA---LYIDLQAGER------ 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +        + + +  +       S +     IT+ +   +  +     +   +  
Sbjct: 55  PPEEIEKQFVEKIEAMAARQEGVKDVSSSSKVGGATITVEYDWDQDMDAAFLDLQRSMSQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +      +     +         +++   +  ++     E           ++   E   
Sbjct: 115 IAQD--EEITSLNVSRYDANATPVMIISMSHKEIK-DMNELRKIAENYMRSELVRLEGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               + +    +  + D   L     T   ++      N +  G       ++ +     
Sbjct: 172 DIRLNGQENAFVEVKTDSYMLEAFNLTAETIASKIESMNRNVSGGTIVNDDIQYTVKGVN 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L++D  +I  I +   T             +          +      I        +  
Sbjct: 232 LLKDLEDIGNIIVAFKTPGSTDTESGNSSTVKAP------VYLKDVAKIELKNKDPENLV 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              A          + + +    +E        L+      + +++          S   
Sbjct: 286 RYDAERSLSISVYKENKYNTVKAVENITAKLEELQKSMPGYEFHVIS-NQGDFIGASIGE 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K +  +   L ++VL++ +      L+   SI +++I T  L+   G T+ + ++ G+ 
Sbjct: 345 VKDSAVMGILLAMLVLYVFLRRINTTLIVSVSIPVSIIATFNLMYFNGLTINIMTLGGLA 404

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           LG G+ +D+ I+V E I        S   +   G S     I  S +T ++  + + +  
Sbjct: 405 LGAGMLIDNAIVVMENIFRNLENGLSPKEAAIKGASEVSGAITSSTLTTIVVFLPIVYIQ 464

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   +  A T+  S+L S+F A+ ++  +    ++        +        +   +
Sbjct: 465 GAAGELFKEQAWTVSFSLLSSLFVAVLLIPMLASQYVKAPAKNQASLKIKGYGQFVGKLL 524

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG------VLANRPVDLS 592
             ++       V +   + +  +            +F   I L          N    + 
Sbjct: 525 KHRYAVVLTALVVMIGSYLLLPLIDKEFMPKADSREFSTYITLEPGTRLQSTDNAAATIE 584

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +   L    +  I  Q              +          +++  K   +   + +  
Sbjct: 585 NMIIELAGDDLEWIFTQVGPSTTTESQTTSGKLEGENQAEVKVKLKNKAKADADYIISNL 644

Query: 653 NTEIVGPKISRELIRKGIVGV 673
           +     P+       K    +
Sbjct: 645 SHNYTIPEGVEISFEKEQSAL 665



 Score = 85.9 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 90/241 (37%), Gaps = 7/241 (2%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +  + I     +     +N + ++            V   +K ++ +I   +       
Sbjct: 791  EIAEVSITTAPKEINRSNQNRIGKVTAMLEKGYTLGSVTPEIKAQLKDIQFPAKYSAQIT 850

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               +   E  +     +I+S + + + +  +F+        + T+ L     +  F L G
Sbjct: 851  GEEEKRAESFQGLSFALILSIVLVYMVMASQFESLRHPFTILLTIPLAGVGCIYAFLLAG 910

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               N+ A   ++ L G +VN+ +++ D      +L     +  + I  +  + +   + T
Sbjct: 911  ASLNMMAFIGIIMLAGIAVNNSILLVD---AANRLKAEGFALTEAIKGAAQQRIRPIIMT 967

Query: 776  SMAAFISVLPMAV-WG-GSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            S+   +++LPM   +G G+ + S  A+ +  G+  +   ++ +   +            +
Sbjct: 968  SLTTILALLPMCFGFGEGASLRSPMALAVIGGLFTSTLMTLVVIPCVYYIFDKKVKNVEK 1027

Query: 833  I 833
            I
Sbjct: 1028 I 1028



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 78/206 (37%), Gaps = 4/206 (1%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +   +    ++V     +    +++ + +P          G  I   +       V+   
Sbjct: 295 ISVYKENKYNTVKAVENITAKLEELQKSMPGYEFHVISNQGDFIGASIGEVKDSAVMGIL 354

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           +AML+      +    L    ++ + I  T       G+  N+  +  +    G  +++ 
Sbjct: 355 LAMLVLYVFLRRINTTLIVSVSIPVSIIATFNLMYFNGLTINIMTLGGLALGAGMLIDNA 414

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +VV + + +N+      +S ++   K  +E  G    +++   +  LP+    G+    F
Sbjct: 415 IVVMENIFRNL---ENGLSPKEAAIKGASEVSGAITSSTLTTIVVFLPIVYIQGAAGELF 471

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFI 823
               A+ +  +  SS+F+A  ++  +
Sbjct: 472 -KEQAWTVSFSLLSSLFVAVLLIPML 496


>gi|320449961|ref|YP_004202057.1| acriflavin resistance protein B [Thermus scotoductus SA-01]
 gi|320150130|gb|ADW21508.1| acriflavin resistance protein B [Thermus scotoductus SA-01]
          Length = 1099

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/470 (11%), Positives = 125/470 (26%), Gaps = 29/470 (6%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                     + V   +    ++  S L        S  +  + + + F      + +A 
Sbjct: 50  VSTSYPGAGPEEVAEQVSKPLEDALSTLSGVDTIGSSSTEGFSLVFVQFQQGVDVDRVAV 109

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V+  +    + L  D    ++         I+              +      R    +
Sbjct: 110 EVSQKVAAARALLPKDASPPVVQKFDPSASPILYVALEAPG--EDLSQVLRYAERTLKPR 167

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           + +         +      +    DP RL+ L     ++         +           
Sbjct: 168 LQLVPGVADIRLTGAPKRAIRVYLDPDRLQALGVAPGQVVQALSASALNLPLGSL----- 222

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                            G      T    P T + V  +  D     R        + + 
Sbjct: 223 ---------------TEGEKRLVYTLRNTPATAEEVAYLVLDPSRGLRIR--DVARVEER 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                    L                +     +      A  +          +   +  
Sbjct: 266 AEEPSTLNRLNGRPAVLLAVVKTPDSNAVAVADGVKKTLAETK--LPAGYRAEIALDSTR 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +         + A  V +V+ + +           +I + +   + L  LLG T  
Sbjct: 324 FIRAAVLDTVREAFLAALAVSLVVLVFLGKLNSVFSVILAIPITLSGAILLFGLLGFTYN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L S+  + + +G+ VD +I+V E I    R    +  ++  G S     +  + ++ L  
Sbjct: 384 LISLLALTVAVGIVVDDSIVVAENIDRYRRMGYGLKEAVLKGASEVSVAVAAATLSLLAV 443

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            + + F     G   + F + M  +I +S   A+  +   + +    +  
Sbjct: 444 FLPISFLPGIIGQIFQQFGLGMAAAIAVSWLEALLFLTVRLAYFPDPEPP 493



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 57/152 (37%), Gaps = 12/152 (7%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             + +    L+ +    K       I  + + ++  +  F L G  +NL ++ A+   +G
Sbjct: 336 AFLAALAVSLVVLVFLGKLNSVFSVILAIPITLSGAILLFGLLGFTYNLISLLALTVAVG 395

Query: 732 YSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             V+D +VV    DR R            ++ + K  +E        +++     LP++ 
Sbjct: 396 IVVDDSIVVAENIDRYR------RMGYGLKEAVLKGASEVSVAVAAATLSLLAVFLPISF 449

Query: 789 WG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                G +   F + MA  I V+   ++    
Sbjct: 450 LPGIIGQIFQQFGLGMAAAIAVSWLEALLFLT 481



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 15/132 (11%)

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLYTTSISFRDLID 762
                  L G   ++ +V  V+ LIG    + +++ D    RMR+           R+ + 
Sbjct: 973  AFWLTYLLGTGLDVISVLGVVMLIGLVTKNAILLLDFAVQRMRE--------KPLREALV 1024

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + T++   I  LP+ +    G        + +  G++ +   ++F+    
Sbjct: 1025 EAARLRLRPILMTTLTVLIISLPLLLGTGEGAEYRRPLGVIILGGLLSSTLLTLFVVPAA 1084

Query: 820  LLFIYDWRAKNA 831
                   RA+ A
Sbjct: 1085 FYAFEGRRAQEA 1096


>gi|319952804|ref|YP_004164071.1| transporter, hydrophobe/amphiphile efflux-1 (hae1) family
           [Cellulophaga algicola DSM 14237]
 gi|319421464|gb|ADV48573.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Cellulophaga algicola DSM 14237]
          Length = 1045

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/496 (11%), Positives = 135/496 (27%), Gaps = 38/496 (7%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKK-EG 85
               ++ +P   P               + +           + +     +   +   EG
Sbjct: 28  SSLPIEEYPDIAPPT-------------IKVTASYAGANAETVLESVIIPIEEQINGVEG 74

Query: 86  IGVFSMR---QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           +   +         +IT+ F      +  A  V   +   N+ L  +  +  ++T  ++ 
Sbjct: 75  MSYITSTASNTGAAEITVYFNQEVDADIAAVNVQNRVSRANALLPQEVIQTGVITQKQET 134

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
            +++      +     A      +    +  +             +    +     P +L
Sbjct: 135 SALMFISMYSENENYDATFIQNYLKINVVPAMQRISGVGDVSLFSQQDYAMRIWLKPEKL 194

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
                  + ++      N        G     + +   Y +                   
Sbjct: 195 ATYGLIPSDITAALAEQNLEAAAGTLG---QNNGEAFSYTLTYSGR-------------F 238

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    +                 I           +                 +  
Sbjct: 239 KHEQQYADIVIKALGNGEFLRLNDVATIELDAQSYAANAMSMGNPAVFMGIFQTKGSNAR 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
             IE   +    ++          V          S      T      LV +V+F+ + 
Sbjct: 299 EIIENIKVTLEDVKKDLPEGLDIFVPYDTSLFLNASIEKVISTLLEAFLLVFLVVFLFLQ 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             +  L+   ++ +++I T   L++ G ++ L ++  +VL IG+ VD  I+V E +  + 
Sbjct: 359 DFRSTLIPAIAVPVSIIGTFFFLNVFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHAKL 418

Query: 443 RKNQSVFC----SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
              +              S A  +I        I    +    G     F +T+ ++ILI
Sbjct: 419 DAGEKNPKKATLVAMNEISGAIISITLVMAAVFIPVTFITGPTGVFYEQFGVTLIIAILI 478

Query: 499 SMFTAISIVRAMMIFI 514
           S   A+++  A+   +
Sbjct: 479 SAVNALTLSPALCALL 494



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/288 (10%), Positives = 76/288 (26%), Gaps = 17/288 (5%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            +    S       + +         +D    + +   +     ++             ++
Sbjct: 757  YASDFSRFGKQFRVYIQALPDDRADVDDLNSMYVRTDSGEMTPITQFVKLERVYGPQSVT 816

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
              N                   A   + E V           +    E V          
Sbjct: 817  RFNLFNSTAITGATNDGFSTGDAIRVIEEEVSNLPNNYTIAYSGLTREEVSAGSQTIF-- 874

Query: 668  KGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                  I     + +Y  +      +      I +L   +        L G+E N+    
Sbjct: 875  ------IFGLSILFVYFLLSAQYESYLLPFAVILSLPFGVFGAYISTKLLGLENNIYFQI 928

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            +++ LIG    + +++ +     ++      S  +         L   + TS A  + ++
Sbjct: 929  SLIMLIGLLAKNAILIVEIA---LQKRKAGESIVEAAIDGAKSRLRPILMTSFAFILGLM 985

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            P+ +    G     S       G+++     +F+   + +     + K
Sbjct: 986  PLVLAKGVGSEGNRSIGTGAVGGLLIGTLLGVFVIPILFILFQWLQEK 1033



 Score = 45.8 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 92/251 (36%), Gaps = 6/251 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L+ V +     Q    +  +      F+   Q +  ++      +++  + + + +
Sbjct: 256 EFLRLNDVATIELDAQSYAANAMSMGNPAVFMGIFQTKGSNAREIIENIKVTLEDVKKDL 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P                  I K I  ++ + + + + +++    +   L     + + I 
Sbjct: 316 PEGLDIFVPYDTSLFLNASIEKVISTLLEAFLLVFLVVFLFLQDFRSTLIPAIAVPVSII 375

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F  +FG   NL  + A++  IG  V+D +VV + +   +       + +     ++
Sbjct: 376 GTFFFLNVFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHAKLDAGEK--NPKKATLVAM 433

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           NE  G  +  ++      +P+    G        F + +   I+++A +++ ++  +   
Sbjct: 434 NEISGAIISITLVMAAVFIPVTFITGPTGVFYEQFGVTLIIAILISAVNALTLSPALCAL 493

Query: 823 IYDWRAKNARI 833
           +      +  +
Sbjct: 494 LLKGHKDDEEL 504


>gi|317012422|gb|ADU83030.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori Lithuania75]
          Length = 1028

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTSYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  K  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPKHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIISIAVVLVFVGSLFVASKLGMDFM 540



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   V 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 40.1 bits (91), Expect = 1.8,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPSYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|72162695|ref|YP_290352.1| integral membrane efflux protein [Thermobifida fusca YX]
 gi|71916427|gb|AAZ56329.1| putative integral membrane efflux protein [Thermobifida fusca YX]
          Length = 1064

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 65/654 (9%), Positives = 181/654 (27%), Gaps = 33/654 (5%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
             L  +I    L+    +       +  PS      +              +      V 
Sbjct: 12  RALILLITLSALIFGAISAGS-MKRELMPSFDVPMAV---------VGAQYQGASPQVVE 61

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    ++    +        +      +I   F      +++   +   +  V   L 
Sbjct: 62  NDVTQVLEQAVKGVPGVTSYTSTSSTGTAQIIAEFDYGDSTDDVVRSLQKAVDQVEPFLP 121

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            D    ++    +    ++L+    D     A + +  I    + ++           + 
Sbjct: 122 EDVDPYVMAFGMDDIPVVMLAVGTSDD---DAQKLAEPIEDLLVPELESISGVRAVQVTG 178

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                +    D  +L +   T A ++           G           D     V    
Sbjct: 179 IRESTVVVTPDEDKLEKAGYTVADLTTALQASGRLLPGGQI------TEDDRTLTVTTGG 232

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +  +                 +                  ++   L             
Sbjct: 233 RLESLEDVENIWLTPSGAAAAAIPGMPGARAPEPVQLSEVADVELVLDEATSITRTNGEP 292

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
               + +     +     E     A  +           V          S +       
Sbjct: 293 SLGILVTKTPDGNTVEVSEKVQERATDIADQLGDDISITVVFDQAPFINDSIAAMAEEGL 352

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           +  G  ++++ + +L  +  +V   SI +++++ +  +     TL L ++ G+ + +G  
Sbjct: 353 LGLGFAVLIILVFLLSVRSTIVTAVSIPVSLLIAILGMWSFDYTLNLLTLGGLTVAVGRV 412

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGA 484
           VD +I+V E I+      +    ++  G       I  + +T +   + + F     G  
Sbjct: 413 VDDSIVVLENIKRHLSYGEDKHTAVLTGVREVAVAITSATLTTIAVFLPIGFVSGEVGEL 472

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----------SIDINPLSRFFLI 534
            R FA+T+ +++  S+  +++I+  +  + ++ K +                  S     
Sbjct: 473 FRPFAVTVSIALAASLLVSLTIIPVLAYWFMKPKVVPPEELERIKAEEYQRELRSPLQRS 532

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +     + R+  +  + +  + ++ +      N+ ++ +G   + V+   PV  S+ 
Sbjct: 533 YLPVIRWATKYRWTTLLAAGVIFLGTLGMTPFIKTNF-LEDQGQNTVSVVQELPVGTSLE 591

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            ++ E+ ++ +   +    E              +                   
Sbjct: 592 AADAEAAKVEEALEKVAWIESYQATFGGGGMFGGLFGGADSITYTITTNPDGDQ 645



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 89/242 (36%), Gaps = 9/242 (3%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            S V+ +  +     +          F          +    RV   +   + ++      
Sbjct: 789  SEVKLSSVAEVEEVLQAPELSRSDGFRSATVTATPTADDLGRVTSELYVALADLDLPDGA 848

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
                    +   E   +  V ++++ + + + +   F      L  + ++    T  LG 
Sbjct: 849  TAEIGGVSEDQNEAFAQMGVAMLVAVVIVYLIMVATFKSLRQPLVLLVSIPFAATGALGL 908

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              + G   +L A+  +L LIG  V + +V+ D + +        +  R+ + +     L 
Sbjct: 909  LLVTGTPLSLPALIGMLMLIGIVVTNAIVLIDLVNQYRA---KGMELREAVVEGSRHRLR 965

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              + T++A   ++ PMA+    GG+ I    AI +  G++ +   ++ I  P+L  + + 
Sbjct: 966  PVLMTALATIGALTPMALGITGGGAFISQPLAIVVIGGLISSTLLTL-ILVPVLYTMTEA 1024

Query: 827  RA 828
              
Sbjct: 1025 AK 1026



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 81/246 (32%), Gaps = 7/246 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMVKKKI 642
            A  PV LS V      L       +        ++  +   G++     +V E      
Sbjct: 262 RAPEPVQLSEVADVELVLDEATSITRTNGEPSLGILVTKTPDGNTVEVSEKVQERATDIA 321

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            ++    +I       P I+  +      G++    A+LI +         +    ++ +
Sbjct: 322 DQLGDDISITVVFDQAPFINDSIAAMAEEGLLGLGFAVLIILVFLLSVRSTIVTAVSIPV 381

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   +     F    NL  +  +   +G  V+D +VV + ++   +  +        + 
Sbjct: 382 SLLIAILGMWSFDYTLNLLTLGGLTVAVGRVVDDSIVVLENIK---RHLSYGEDKHTAVL 438

Query: 763 KSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
             + E        ++      LP+  V G  G +   FA+ ++  +  +   S+ I   +
Sbjct: 439 TGVREVAVAITSATLTTIAVFLPIGFVSGEVGELFRPFAVTVSIALAASLLVSLTIIPVL 498

Query: 820 LLFIYD 825
             +   
Sbjct: 499 AYWFMK 504


>gi|332286663|ref|YP_004418574.1| AcrB/AcrD/AcrF family protein [Pusillimonas sp. T7-7]
 gi|330430616|gb|AEC21950.1| AcrB/AcrD/AcrF family protein [Pusillimonas sp. T7-7]
          Length = 1035

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/550 (10%), Positives = 143/550 (26%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +    +   G+L           +   P                    +     
Sbjct: 10  RPVATTLAMVALLVSGILA-----YRLLPVSALPQVDYPTIQ---------VSTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     + ITL F      +    +V   +   
Sbjct: 56  PDVMAALVTSPLERQLGQMPGLTQMTSSSSGGSSLITLQFDLDLPLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     +        + V+S   +        E    I  +   ++        
Sbjct: 116 SNLLPGDLPAPPIYNKVNPADTAVIS-LAVTSPTLPLYEVRDLIDIRVAQKLSQISGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +P  L     T A +    V                    G    
Sbjct: 175 VSITGGQRPAVRIQANPRALAAHGLTLASLRSAIV--------------------GANVN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                            N   ++      +                   +    +     
Sbjct: 215 QPKGNLDGPERSTTINVNDQLRSVDDYQQLIVAYENGAALRLQDVAQTREDAENIRQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    L   L+          V          S    
Sbjct: 275 IGQTPAILLNIQRQPGANVIEVVDQVKALLPSLQQALPVGVDVSVATDRTQTIRDSIEHV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V F+ +       +    + L+++ T  ++ L G ++   ++  + +
Sbjct: 335 QIEMLLAVMLVVLVTFVFLRTWTATFIPSIVVPLSLVGTFGIMYLAGFSVNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E I     K +S   +   G ++   T+    ++ +   + L F   
Sbjct: 395 ATGFVVDDAIVMIENIARYIEKGESALNAALKGSAQIGFTLVSLTLSLIAVLIPLLFMSD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FAIT+ ++IL+S+  ++++   M   +++ +         L+    +     
Sbjct: 455 VIGRLFREFAITLAVAILLSLLISLTLTPMMCARLLKAESEIKHSRFQLALGQYMDRLTH 514

Query: 540 IQFMRARFWG 549
                 ++  
Sbjct: 515 AYDGGLKWVL 524



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 46/124 (37%), Gaps = 8/124 (6%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W         + L +  T G   L G   N   + A+    G+ V+D +V+ + +
Sbjct: 351 VFLRTWTATFIPSIVVPLSLVGTFGIMYLAGFSVNNLTLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +      S  +   K   + +G ++ +   + I+VL   ++   VI      FAI 
Sbjct: 411 ---ARYIEKGESALNAALKGSAQ-IGFTLVSLTLSLIAVLIPLLFMSDVIGRLFREFAIT 466

Query: 801 MAFG 804
           +A  
Sbjct: 467 LAVA 470



 Score = 44.3 bits (102), Expect = 0.094,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
               +  ++ R  I ++        + T++AA  S +P+ +    G  +     + M  G+
Sbjct: 936  AERSRGLAPRAAIHEAALLRFRPILMTTLAALFSAIPLMLATGSGSELRQPLGLVMVGGL 995

Query: 806  VVAASSSIFIAAPILLFIYDW-RAKNAR 832
            + +   ++F    I L      R K  R
Sbjct: 996  LCSQVLTLFTTPVIYLMFDRLSRGKRGR 1023


>gi|158321631|ref|YP_001514138.1| acriflavin resistance protein [Alkaliphilus oremlandii OhILAs]
 gi|158141830|gb|ABW20142.1| acriflavin resistance protein [Alkaliphilus oremlandii OhILAs]
          Length = 1037

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/512 (10%), Positives = 153/512 (29%), Gaps = 41/512 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++  ++  +G +      L +  +D FP       +                 
Sbjct: 9   KRPVTITMIVLVVVLLGAIS-----LTRLPIDLFPEIEVPVAV---------ISTSYTGV 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    + + + ++          +  + +   F +    +  A ++   +  
Sbjct: 55  GPQEIENLITKQIEGVIATVRNIDTVSSISSEGNSIVIAQFNNGTDMDFAALEMREKVDM 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L       +++      + I+    +    +S     + +   QR   +   +   
Sbjct: 115 IKGFLPDGATTPMVLKIDPNSMPIIQIALSTKGDLSGLQTLAEDTFSQR---LERIDGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    + + L     +  ++S      N +  G        + S     
Sbjct: 172 SVSVGGGFTSEVEILVEQNELASYGLSINQLSQLLSTANMNLPGGTVNKGEGKLSVRVSG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +I    +                                   +      V    
Sbjct: 232 EFKSLDDIRNTPITL--------------------GTGDVITLRDIGKVDLVNKDVSAIS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +     +        L+          +   +      S   
Sbjct: 272 RTNGKDSINISVQKQSGKNTVQVAKLIQKEIQKLQRDYP-NIEINIVLDSSTIITDSIDT 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + + L +++L++ +   +  L+   +I +++I + +LL   G TL + ++ G+ 
Sbjct: 331 VVNNVIVGSILAIVILYIFLKNIRTTLIIGLAIPISLIASFSLLYFNGITLNMMTLGGLA 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VDS I+V E I     +  S   +   G +     I  S +T +   + + F  
Sbjct: 391 LAVGMLVDSAIVVLENIYRFRSEGHSKEDAAIKGAAEVGMAITASTLTTVAVFLPIVFID 450

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAM 510
              G   + FA+T+ LS+  S+  +++++  +
Sbjct: 451 GIVGTIFKDFALTVTLSLGASLIVSLTLIPML 482



 Score = 71.3 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 85/264 (32%), Gaps = 11/264 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + +     + L  +       +      +    +   +   +    ++V   ++++ 
Sbjct: 241 NTPITLGTGDVITLRDIGKVDLVNKDVSAISRTNGKDSINISVQKQSGKNTVQVAKLIQK 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             +K+    P   I         I+  +       ++ S +A++I           L   
Sbjct: 301 EIQKLQRDYPNIEINIVLDSSTIITDSIDTVVNNVIVGSILAIVILYIFLKNIRTTLIIG 360

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + + +  +       GI  N+  +  +   +G  V+  +VV + +    +  +   S 
Sbjct: 361 LAIPISLIASFSLLYFNGITLNMMTLGGLALAVGMLVDSAIVVLENI---YRFRSEGHSK 417

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
            D   K   E       +++      LP+       G++   FA+ +   +  +   S+ 
Sbjct: 418 EDAAIKGAAEVGMAITASTLTTVAVFLPIVFIDGIVGTIFKDFALTVTLSLGASLIVSLT 477

Query: 815 IAAPI---LLFIYDW--RAKNARI 833
           +   +   +L + +     K  ++
Sbjct: 478 LIPMLSSKILTLDEEDPSKKKKKL 501



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 81/209 (38%), Gaps = 7/209 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +    P+ +++  S +  + +     Q     +  +V +  Q  D    +   ++VKK 
Sbjct: 775 QISITTPMGINIPLSQVAEISVQKGPVQISRENQERVVTVTSQIVDRDLGSIHTDIVKKL 834

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
               +P     N      ++     +  +  ++++ + + + +  +F+       I    
Sbjct: 835 QEYPMPEGYSYNIGGENEEMMDAFAQLSL-ALVLAVVLIYMVMAAQFESLIHPF-IIMFT 892

Query: 702 LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + +  + G  ALF       +TA+  V+ L G  VN+ +V+ D +     L        D
Sbjct: 893 IPLAFSGGALALFITRRALGVTALIGVIMLAGIVVNNGIVLIDYIN---VLRKEGKERFD 949

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV 788
            I  +    L   + T++   + ++P+A+
Sbjct: 950 AIIIAGPVRLRPILMTTLTTILGLVPLAL 978


>gi|260461600|ref|ZP_05809847.1| acriflavin resistance protein [Mesorhizobium opportunistum WSM2075]
 gi|259032670|gb|EEW33934.1| acriflavin resistance protein [Mesorhizobium opportunistum WSM2075]
          Length = 1027

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/543 (13%), Positives = 153/543 (28%), Gaps = 48/543 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  MI  +G        +    + ++P                 + + +   
Sbjct: 9   RRPVLSTVLACMILLLG-----FQGIFNLSIRQYPKVDE-------------TAITITTA 50

Query: 62  EDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +Q           +  +       S R   + +T+        +    +V  
Sbjct: 51  YPGASADLIQGFISAPIARAVASTENIDYVTSSSRPSSSTVTVQMKLGSNPDVALTEVLS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +QGV   L    K  ++V  T ++ +++        +     + +  I R    ++   
Sbjct: 111 KVQGVRGTLPDASKDPVIVKGTGQQFAMMYISMQNPNMTKE--QLTEYIERVIRPRMSTV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP RL     T A++       N           ++  S 
Sbjct: 169 EGVADVQIFGAQEYSMRVWIDPVRLAARGVTAAEVLAAINNSNFLSAPGNTQNEYVVSSI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  ++                      +   ++                 +       
Sbjct: 229 TVRSTLQTP--------------------EAFAELPLRSTDGNVVRLRDVARVELGAENT 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T      L   ++          V     G    
Sbjct: 269 DTRVSFNGKPGTFLAIFPTPAANPLTTAAALTKLVPQIQETLPKGMTIEVVYDATGQISA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T A    +V++V+ + +   +  ++   +I L+++    LL  +G ++ L S+
Sbjct: 329 SIDEVFKTIAEAVAIVVVVILLFLGSFRSVMMPIITIPLSLVGVCFLLFAVGYSINLLSL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E I       + +   +   G     S I    +T       
Sbjct: 389 LAMVLAIGLVVDDAIVVVENIHRHMEEDHMTPMQAAFSGMREIASAIVAMTMTLAAVFAP 448

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F G   G   R FA+T+  S+++S   AI+I   M   +++              F  
Sbjct: 449 LAFTGGLTGALFREFAVTLAGSVVLSGIIAITITPMMSARLLKPGNAGRFQRIVDGVFSR 508

Query: 534 IPD 536
           +  
Sbjct: 509 VEH 511



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 53/137 (38%), Gaps = 5/137 (3%)

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +     +   +  I T+ L +          G   NL ++ A++  IG  V+D +VV + 
Sbjct: 349 LLFLGSFRSVMMPIITIPLSLVGVCFLLFAVGYSINLLSLLAMVLAIGLVVDDAIVVVEN 408

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIP 800
           +     +    ++        + E     V  +M       P+A  G   G++   FA+ 
Sbjct: 409 IH--RHMEEDHMTPMQAAFSGMREIASAIVAMTMTLAAVFAPLAFTGGLTGALFREFAVT 466

Query: 801 MAFGIVVAASSSIFIAA 817
           +A  +V++   +I I  
Sbjct: 467 LAGSVVLSGIIAITITP 483



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 86/276 (31%), Gaps = 11/276 (3%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  +    V LS V     +     I   N        
Sbjct: 744  YDIIPQVPQEFRDNPEKLGQYFVRSVTGEMVPLSAVVKISNNASPAAIEQFNQLNSSTIS 803

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           + ++ ++ + +   +     +     + +  L     +    + I
Sbjct: 804  ALPLPGVTTGDGLKVLEDIARESLPDTFFIDYSGQSRQEKEQGNTIL-----IAFGAAVI 858

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  +  + L I   +    L     N+     ++TLIG      
Sbjct: 859  VIYLVLAAQFESFRDPLIIMMAVPLSIFGAIVPLNLGLGTLNIYTQVGLITLIGLITKHG 918

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ +    N +     +  RD I  S    L   + T+ A  + V+P+      G +  
Sbjct: 919  ILLVE--FANQQREIHGMRRRDAIIASAKVRLRPILMTTAAMALGVVPLITSSGAGAAAR 976

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             S  + +  GI+V    ++F+      FI      +
Sbjct: 977  YSMGLVIFTGILVGTMFTLFVVPMFYTFIASKDLPH 1012


>gi|124515671|gb|EAY57180.1| putative acriflavin resistance protein [Leptospirillum rubarum]
          Length = 1027

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/547 (14%), Positives = 167/547 (30%), Gaps = 43/547 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           ++   ++ ++   +   G +        +   D FPS                  + L+ 
Sbjct: 8   LKRPVFVGMMLLALVISGAVS-----YLRLGEDLFPSVSFPI-----------LSVTLQE 51

Query: 60  -VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +   + +  +   S L              + +TL F DS     +  +V   
Sbjct: 52  PGTSARVIEQKVTVPLENALSTLPGLQHIHSVSVPGASSVTLIFPDSVRTGRMLARVEEK 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +Q     L  D    ++   T  E+ ++     +    S +  Q + +    +  +    
Sbjct: 112 VQQTRPLLPKDVTHPVISRVTPTEMPLLWILFPLKGSRSPSDRQWLRM--HLVSPLRALG 169

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                +        L     P  L +  GT  ++                          
Sbjct: 170 GVSSVVSLWPPETVLHVWIRPGDLGRYKGTIDQVIASIKA-------------------- 209

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              LV     + G          D  T   + ++       R+       +I +     +
Sbjct: 210 ASLLVPTGKVVQGKQELLVETREDRLTKSSLENLLVILGAGRQIPLFRIASIDESPEQPV 269

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L   +        K   +G    +    L A L+  S      I++    G    +
Sbjct: 270 SILRLDGKLAVGLKVYKKHDANGIEVSKEVRHLLADLKFPSSFGGRPIIQMDLSGFVAKN 329

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           D     T  I   L ++V+F+ +      ++A  +I  +VI T A++ L   TL   ++ 
Sbjct: 330 DRELFETLFIGGFLTVVVIFLFLGSWSSTIIASLAIPASVISTFAIMRLAHFTLNTLTML 389

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+ L +G+ VD  I+V E I       Q  F +   G       +  +    +   V + 
Sbjct: 390 GLSLVVGILVDDAIVVLENISRHREMGQEPFVAAADGVGEIGLAVLATTFCIVAVFVPVA 449

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F     G     F +T+  ++L+SM  ++++   +   +++  +  S +        +I 
Sbjct: 450 FMKGVFGKFFHEFGLTVSFAVLMSMLVSLTLTPVLAARMVKGNRGTSRNGKKNGNPSVIE 509

Query: 536 DCIAIQF 542
                  
Sbjct: 510 KMRGRYR 516



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 39/378 (10%), Positives = 108/378 (28%), Gaps = 7/378 (1%)

Query: 459 AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
               +        +  + + F   G+            L+S   A+  V +++       
Sbjct: 123 VTHPVISRVTPTEMPLLWILFPLKGSRSPSDRQWLRMHLVSPLRALGGVSSVVSLWPPET 182

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            +           +       I  ++A    V    +       L+ T            
Sbjct: 183 VLHVWIRPGDLGRYKGTIDQVIASIKAASLLVPTGKVVQGKQELLVETREDRLTKSSLEN 242

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + + A R + L  + S  ES +      +        L   +    + +  ++ +  +
Sbjct: 243 LLVILGAGRQIPLFRIASIDESPEQPVSILRLDGKLAVGLKVYKKHDANGIEVSKEVRHL 302

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAI 697
              +            ++       +  R+    + I   + +++       W   + A 
Sbjct: 303 LADLKFPSSFGGRPIIQMDLSGFVAKNDRELFETLFIGGFLTVVVIFLFLGSWSSTIIAS 362

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +   +  T     L     N   +  +  ++G  V+D +VV + +    +        
Sbjct: 363 LAIPASVISTFAIMRLAHFTLNTLTMLGLSLVVGILVDDAIVVLENI---SRHREMGQEP 419

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIF 814
                  + E     + T+       +P+A   G        F + ++F ++++   S+ 
Sbjct: 420 FVAAADGVGEIGLAVLATTFCIVAVFVPVAFMKGVFGKFFHEFGLTVSFAVLMSMLVSLT 479

Query: 815 IAAPILLFIYDWRAKNAR 832
           +   +   +       +R
Sbjct: 480 LTPVLAARMVKGNRGTSR 497



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 85/217 (39%), Gaps = 8/217 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           N+  L       +    ++   V +           +V+E +K  I  + P         
Sbjct: 781 NVAELDYRSEGERRIRDDRMPSVEINANLSGEKTLGKVIEEIKTIIRPLFPQGYSYRFGG 840

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
            G  + + + +   + ++ S +A+ + +  +F+ +   L  + ++ + +   +    L G
Sbjct: 841 SGDVLQQAVGQFA-MAILFSILAVYMVLAAQFENFLTPLVIMISIPVSLVGAILALRLTG 899

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             FNL +   V+ L G    + +++ D       L     S R  + ++    L   + T
Sbjct: 900 TSFNLMSAMGVIILFGLVAKNAILLVD---YTNTLRRQGKSCRVALMEACPIRLRPVLMT 956

Query: 776 SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
           ++A    +LPM+     GG++    A+ +  G++ + 
Sbjct: 957 TVAMIAGMLPMSFGWGAGGALRVPMALVVIGGLLSSM 993


>gi|255658295|ref|ZP_05403704.1| protein-export membrane protein SecD [Mitsuokella multacida DSM
           20544]
 gi|260849611|gb|EEX69618.1| protein-export membrane protein SecD [Mitsuokella multacida DSM
           20544]
          Length = 423

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 152/415 (36%), Positives = 238/415 (57%), Gaps = 27/415 (6%)

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               K   +  +  L       + +     ++ +V   A+ + + I+ +R++ +G++E  
Sbjct: 21  LAFVKPLANSIRQGLDLQGGTHVVLEAEDTDVAKVNDDAMNRVVTIMEKRVNALGLTEPI 80

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           IQR G  R++I+LPG +DP    + +G TA + F                          
Sbjct: 81  IQREGERRVIIELPGVKDPDAAIKTIGKTAMLEF-------------------------- 114

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              E    ++G  L  A A  + +  + VV++ F + GA++F ++T  N+G+ +A++LDG
Sbjct: 115 KDEEGNTVLTGTDLKDAQAATNQQNGQNVVNLEFTDEGAKKFADLTTKNVGRTIAILLDG 174

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            VLTAP + + I  GKA+ISG  T+E A  LA +LR+G+LP+K+NI+E R VG  LG DS
Sbjct: 175 EVLTAPNVREPILGGKAEISGQKTLEEAQNLAVVLRSGALPVKVNIIETRTVGPTLGQDS 234

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K   A   GL  ++LFMI+ Y   G +AD ++    I+ L LL LL ATLTLP +AGI
Sbjct: 235 KDKSEFAFAVGLGAVLLFMILFYRMSGFIADIALMAYTIMLLGLLYLLDATLTLPGVAGI 294

Query: 421 VLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L IG+AVD+N+L+ E  +EE + + +++  S++ GF RA++TIFDSNIT +IA  VLFF
Sbjct: 295 ILSIGMAVDANVLIFEHFKEEYQIQGKTLRLSMESGFKRAFTTIFDSNITTIIAAAVLFF 354

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            G G +RGFAIT+GL  L+SMFTAI++   M+  ++  K  +      ++ F L 
Sbjct: 355 LGTGTIRGFAITLGLGTLLSMFTAITLTHYMLKLMVDSKLFEKPGAYGVTGFMLW 409



 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 70/170 (41%), Gaps = 3/170 (1%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++   K      +   A+L+++ + ++      A   L+      LG   L    
Sbjct: 227 GPTLGQDSKDKSEFAFAVGLGAVLLFMILFYRMS-GFIADIALMAYTIMLLGLLYLLDAT 285

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  VA ++  IG +V+  V++++  ++  ++     + R  ++            +++
Sbjct: 286 LTLPGVAGIILSIGMAVDANVLIFEHFKEEYQI--QGKTLRLSMESGFKRAFTTIFDSNI 343

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              I+   +   G   I  FAI +  G +++  ++I +   +L  + D +
Sbjct: 344 TTIIAAAVLFFLGTGTIRGFAITLGLGTLLSMFTAITLTHYMLKLMVDSK 393



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/264 (10%), Positives = 80/264 (30%), Gaps = 28/264 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR N  + ++  ++  +G+ +A    L              N I  GLDL+GG+H+VLE 
Sbjct: 1   MRKNSLIKLIVCIVAIVGIFLAFVKPL-------------ANSIRQGLDLQGGTHVVLEA 47

Query: 61  ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
              D     +  +      +   +   G+    +++    ++ +     +  +     + 
Sbjct: 48  EDTDVAKVNDDAMNRVVTIMEKRVNALGLTEPIIQREGERRVIIELPGVKDPDAAIKTIG 107

Query: 117 LFLQGVNSKLN----------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
                                 D +        +  +++  +     +      +     
Sbjct: 108 KTAMLEFKDEEGNTVLTGTDLKDAQAATNQQNGQNVVNLEFTDEGAKKFADLTTKNVGRT 167

Query: 167 IRQRID-QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
           I   +D ++  + +  + +   +  I      + ++   ++  +  +     +      G
Sbjct: 168 IAILLDGEVLTAPNVREPILGGKAEISGQKTLEEAQNLAVVLRSGALPVKVNIIETRTVG 227

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEI 249
              G      S+    +    V +
Sbjct: 228 PTLGQDSKDKSEFAFAVGLGAVLL 251


>gi|223940327|ref|ZP_03632183.1| acriflavin resistance protein [bacterium Ellin514]
 gi|223890990|gb|EEF57495.1| acriflavin resistance protein [bacterium Ellin514]
          Length = 1033

 Score =  139 bits (349), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 60/582 (10%), Positives = 159/582 (27%), Gaps = 40/582 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P                    +L     + +   +    +     +     
Sbjct: 29  FRLLPVSPLPQINFPTI---------SVQAMLPGASPEIMASSVAAPLERQFGHIAGVTE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +       ITL F  +R  +  A  V   +    S L  +   N          + +
Sbjct: 80  MTSASFLGSTSITLQFDLNRDIDGAARDVQAAINAARSYLPSNLPSNPTYRKVNPADAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    +   I                ++   +   Q +     L  +  + +P++L    
Sbjct: 140 MV-MAVTSEIFDRGHLYDAASTIIQQRLSQIDGVGQVIVGGSSLPAVRVDVNPTQLSAYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
               ++S      N +     F          +   +       G               
Sbjct: 199 LGLQQVSNILRQANANLAKGQFWDEQCTADIVSNDQLLKAEAYKG--------------- 243

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                ++   +  +              I   + Q +   T++
Sbjct: 244 -----LVVSYTNGAAVTLSDLADVHDSVENIRAAGFFNGIPSVVVIIFRQPQANIIDTVD 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L+A         +          S    +    I   LV++V+F+ +   + 
Sbjct: 299 RVLAALPSLKASIPSAMGLHIAVDRTTTIRASVRDVERALLISTVLVILVVFLFLRNVRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ +++I T  ++ L G ++   S+  + +  G  VD  I+V E I     +  
Sbjct: 359 TLIPSVAVPVSLIGTFGVMYLCGYSIDNLSLMALTISTGFVVDDAIVVIENITRYLERGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           +   +   G      T+   +I+ +   + +   G   G   R FA+T+ ++I++S+  +
Sbjct: 419 TPLEAALRGAREIGFTVLSISISLVAVFIPILMMGGIVGRLFREFAVTLSVAIMVSLVVS 478

Query: 504 ISIVRAMMIFI-------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           ++    M   +        + +  +++        +     +               I  
Sbjct: 479 LTTTPMMCARLLRLQREEEQGRFYRTMGRVFDRMLWAYERSLGWVLRHQAITLCIFVITV 538

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            +  +  +      +     G I   +   + +    ++  +
Sbjct: 539 ILNVLLFMVVPKGFFPQQDTGSIIGAIQGEQQISFQAMQDRM 580



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 88/242 (36%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V LS +    +S++    +          ++  +    + +     +    
Sbjct: 245 VVSYTNGAAVTLSDLADVHDSVENIRAAGFFNGIPSVVVIIFRQPQANIIDTVDRVLAAL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
             +   +P +   +  +      R  +R     ++IS + +++ +++  +     L    
Sbjct: 305 PSLKASIPSAMGLHIAVDRTTTIRASVRDVERALLISTVLVILVVFLFLRNVRATLIPSV 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + +  T G   L G   +  ++ A+    G+ V+D +VV + +    +     ++  
Sbjct: 365 AVPVSLIGTFGVMYLCGYSIDNLSLMALTISTGFVVDDAIVVIENI---TRYLERGLTPL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   +   E     +  S++     +P+ + GG V      FA+ ++  I+V+   S+  
Sbjct: 422 EAALRGAREIGFTVLSISISLVAVFIPILMMGGIVGRLFREFAVTLSVAIMVSLVVSLTT 481

Query: 816 AA 817
             
Sbjct: 482 TP 483



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 100/279 (35%), Gaps = 8/279 (2%)

Query: 554  ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +      +             ++    L  +  R  +  V    +               
Sbjct: 738  VSTMFTPLNQYHVVLEVAPQFWQSPESLDDIYVRSTNGVVPLRAVTHFGEDTAPIAVNHQ 797

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V L +     +A +  + ++++    +   +T+        +  +  +    + +
Sbjct: 798  GQFPSVTLSFNLISGMALSDAVGLIRQMEQSVGLPATVHGNFSGTLQAFQASLATEPLLI 857

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + + +A+ I + I ++ Y     I + +    +   L    +  ++ ++ A+  V+ LIG
Sbjct: 858  VTALLAVYIVLGILYESYVHPITILSTLPSAGVGAVLALM-ICRVDLSVIALIGVILLIG 916

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ D     +       S R+ I ++        + T+MAA +  LP+ +   
Sbjct: 917  IVKKNGILLVD--FALVAERDEGKSPRESIHQACLLRFRPILMTTMAAALGALPLVLGTG 974

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             G  +     I +  G++V+   +++    I L++  +R
Sbjct: 975  TGSELRRPLGIAIVGGLLVSQVLTLYTTPVIYLYLDRFR 1013


>gi|330958499|gb|EGH58759.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 402

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/423 (10%), Positives = 105/423 (24%), Gaps = 31/423 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G          Q  L+++P   P   I                  
Sbjct: 8   RPIFAWVIAICIMLGGGFSI-----SQLPLEQYPDIAPPT-IK--------ISATYTGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEG-IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++    L +   +   S       I+L+FA     +    +V   LQ 
Sbjct: 54  AKTVEDSVTQVIEQQMKGLDRLTYMSASSSSAGSASISLTFAAGTDPDVAQMQVQNKLQQ 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L    +   L  T      ++L   + D       +    I    +DQ+   +   
Sbjct: 114 AESRLPQSVQSEGLTVTKGGSDFLMLVALSSDNDSVTGTQIGDYISSTLLDQLSRVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L +     + +S      N        G            
Sbjct: 174 DVQTLGSG-YAMRIWLDPGKLEKYALMPSDISSALEAQNTEVSAGQLGALPAVAGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + ++                 +    +                 +           
Sbjct: 233 TISARSKL-------------QTPEQFESVVVKSTSDGAVVLLSDVARVELGSESYDINS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE--ERNVGADLGSD 359
            L             +  +     E        L                        S 
Sbjct: 280 ALNGRPAAAMGIQLASGANALSVGEVIKAKLKELEPFYPSQMQLKTVIAYDTTPFVSLSI 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      LV++++F+ +   +  L+   ++ + ++ T  +L++ G ++   ++  
Sbjct: 340 QEVVKSLGEAIVLVVLIMFLFLQNLRATLIPAITVPVVLLGTFGVLAMFGYSINTLTMFA 399

Query: 420 IVL 422
           +VL
Sbjct: 400 MVL 402


>gi|218264009|ref|ZP_03477932.1| hypothetical protein PRABACTJOHN_03622 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222354|gb|EEC95004.1| hypothetical protein PRABACTJOHN_03622 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1049

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/597 (11%), Positives = 163/597 (27%), Gaps = 53/597 (8%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ-MYSDELRSFLKK-EGI 86
           Q  +++FP   P               + ++ +        +Q      L   L   E +
Sbjct: 30  QLPVEQFPEIAPPT-------------VSVQANYTGANAETVQKSVVVPLEEALNGVENM 76

Query: 87  GVFSMRQ---IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
              +          I + F      +     V   +      L  +  ++ +     +  
Sbjct: 77  MYMTSSATNAGMANIRIYFRQGTDPDMATVNVQNRIASAQGLLPAEVTRSGITVRKRQTS 136

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
           +I                 +  +      ++       +          L    DP ++ 
Sbjct: 137 NIKALALYSPDNSFDEKFLNNYLKINIEPRLARIAGVGEVNVMGS-DYSLRIWLDPGKMA 195

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
           +     + ++      N        G                                  
Sbjct: 196 RYGLVPSDITAVLDEQNLEAPTGTLGTESENTFQYVLKYRGR----------------YE 239

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
                   +     G           I            +     +  + +  +  + N 
Sbjct: 240 FEQDYENMVIKSLPGGEELKLKDVATIELGSRTYTYIGEVNGHPGSNCMIAQTSGSNANE 299

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            IE    +   +R                     S      T      LV++V+++ +  
Sbjct: 300 IIEEIDKVVEDIRETLPKGMEIADLMSTKDFLDASIKNVIKTLIEAIVLVILVVYVFLQS 359

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +   +   SI +++I T A L++ G +L + ++  +VL IG  VD  I+V E ++ +  
Sbjct: 360 FRSTFIPAVSIIVSLIGTFAFLAVAGFSLNMLTLFALVLVIGTVVDDAIVVVEAVQAKFD 419

Query: 444 KNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILIS 499
           +   S + +     S   S +  +    +   + + F G   G     F +TM +++ IS
Sbjct: 420 EGYKSPYLATIDAMSNITSALVTTTFVFMAVFIPVSFMGGTTGTFYTQFGLTMAVAVGIS 479

Query: 500 MFTAISIVRAMMIFIIRY--------------KKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           +  A+++  A+   I+                +   + D             +     R 
Sbjct: 480 LLNAMTLSPALCALIMTPHADTGSGEKMSFSSRFHVAFDTAFHRVVMKYKGGVFFMLKRK 539

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
               V + I  +     +  T       +  G + + V  +   +L+  +  ++ + 
Sbjct: 540 WLAAVLLVIAGTGLFFLMKTTKTGLVPQEDMGTVFIDVRTSPGSNLAETQFVMDEIN 596



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 56/134 (41%), Gaps = 5/134 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +        ++I+ +  T  F A+ G   N+  + A++ +IG  V+D +VV + ++   
Sbjct: 359 SFRSTFIPAVSIIVSLIGTFAFLAVAGFSLNMLTLFALVLVIGTVVDDAIVVVEAVQAKF 418

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
                  S       +++      V T+       +P++  GG+       F + MA  +
Sbjct: 419 DEGYK--SPYLATIDAMSNITSALVTTTFVFMAVFIPVSFMGGTTGTFYTQFGLTMAVAV 476

Query: 806 VVAASSSIFIAAPI 819
            ++  +++ ++  +
Sbjct: 477 GISLLNAMTLSPAL 490



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 47/436 (10%), Positives = 122/436 (27%), Gaps = 25/436 (5%)

Query: 411  TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
              +  +   ++ G G A    I+  +   E   K       ++   S  Y    D     
Sbjct: 607  MFSKITGNAMISGQGAANGMFIVRLQDWSERTEKGDD----INSVISEIYRRTADIASAD 662

Query: 471  LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            ++        G G   GF I +       +   +SI R M+  +    ++     +  ++
Sbjct: 663  IMVFAPPMIPGYGVSSGFEIYVQDQKGGKVEDLLSITRQMIDKLNARPEIARATTSFDTK 722

Query: 531  FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            F      +     +         +      I   +   +N        + +       +D
Sbjct: 723  FPQYLVEVDASRCKRNGISPSDVLSVLSGYIGGNYASNMNR-FSKLYRVMVQASPEYRLD 781

Query: 591  LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               + +       G++S      +   +   +     ++     +  +            
Sbjct: 782  TEALNNMFVRNDEGEMSPVGQYLKLTRVYGAETLSRFNLFSAINVNGIPADGYSTGQAIQ 841

Query: 651  IQNTEIVGPKISRELIRKGIVG-----VIISAIAML---------IYIWIRFKWYFALGA 696
                       +      G +         S   +          I   +    +  +  
Sbjct: 842  AVREVAAETLPAGYGYEFGGMSREEASTGSSTTVIFIICVVFIYLILCALYESLFVPIAV 901

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            I ++   +  +  F  +FG+E N+     +L LIG      +++ +   +  +     +S
Sbjct: 902  ILSVPFGLAGSFLFAKMFGLENNIYLQIGLLMLIGLLAKTAILLTEYASERRRQ---GMS 958

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSI 813
                   +    L   + TS+     +LP+    G          +    G+++   + +
Sbjct: 959  ISQAAVSAAQVRLRPILMTSLTMIFGMLPLMFASGVGANGNISIGVGTVGGMLIGTVALL 1018

Query: 814  FIAAPILLFIYDWRAK 829
            FI   + +     + +
Sbjct: 1019 FIVPVLFIVFQYLQER 1034



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 65/524 (12%), Positives = 146/524 (27%), Gaps = 36/524 (6%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQS-MLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
            M    WL  +  +I   GL   +          +   +     R S G +L   +  V+ 
Sbjct: 535  MLKRKWLAAVLLVIAGTGLFFLMKTTKTGLVPQEDMGTVFIDVRTSPGSNLAE-TQFVM- 592

Query: 60   VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D+       +    + S +    +           I +   D   +    D +   +
Sbjct: 593  ---DEINRRIKDIPQIRMFSKITGNAMISGQGAANGMFI-VRLQDWSERTEKGDDINSVI 648

Query: 120  QGVNSKLNVDPKKNLLVTTTEKEISIVLS---QNNIDQVISHAIEQSMEIIRQRIDQI-G 175
              +  +       +++V          +S   +  +       +E  + I RQ ID++  
Sbjct: 649  SEIYRRTADIASADIMVFAPPMIPGYGVSSGFEIYVQDQKGGKVEDLLSITRQMIDKLNA 708

Query: 176  ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
              E             Q   E D SR ++   + + +                G  +  +
Sbjct: 709  RPEIARATTSFDTKFPQYLVEVDASRCKRNGISPSDVLSVL--------SGYIGGNYASN 760

Query: 236  SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             +    L    V+ S  +     A  +        ++S      +       + + +   
Sbjct: 761  MNRFSKLYRVMVQASPEYRLDTEALNNMFVRNDEGEMSPVGQYLKLTRVYGAETLSRFNL 820

Query: 296  VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                              +     +  ++   A      + A +LP             +
Sbjct: 821  FSA--------------INVNGIPADGYSTGQAIQAVREVAAETLPAGYGYEFGGMSREE 866

Query: 356  LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
              + S       I    + ++L  +       +    S+   +  +     + G    + 
Sbjct: 867  ASTGSSTTVIFIICVVFIYLILCALYESLFVPIAVILSVPFGLAGSFLFAKMFGLENNIY 926

Query: 416  SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
               G+++ IGL   + IL+ E   E  R+  S+  +           I  +++T +   +
Sbjct: 927  LQIGLLMLIGLLAKTAILLTEYASERRRQGMSISQAAVSAAQVRLRPILMTSLTMIFGML 986

Query: 476  VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
             L F    G        +     +LI     + IV  + I    
Sbjct: 987  PLMFASGVGANGNISIGVGTVGGMLIGTVALLFIVPVLFIVFQY 1030


>gi|253581574|ref|ZP_04858799.1| RND superfamily resistance-nodulation-cell division antiporter
           [Fusobacterium varium ATCC 27725]
 gi|251836644|gb|EES65179.1| RND superfamily resistance-nodulation-cell division antiporter
           [Fusobacterium varium ATCC 27725]
          Length = 1026

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 78/618 (12%), Positives = 172/618 (27%), Gaps = 44/618 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  IGL+               P                      +  
Sbjct: 9   RRPVATTMLMISVMFIGLMAMFSMKSELLPNMNIPVVT--------------VRTTWQGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E+   ++       +    Q+ I + F      +    ++   L  
Sbjct: 55  VAEDVETQVTKKIEEILPNVEGIDKIESTSTYGQSTIVVKFDYGINADEKVTEIQRELSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L       +         ++ L             E S  +      +        
Sbjct: 115 ITNDLPSAADTPIAKKVEAGTGNLTLVIMMSAPNK---AELSSFVEEYLKPKFESLPGIG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         QL  + D  +L     +  ++     + + +                   
Sbjct: 172 QVNVFGNPDKQLQIQIDSDKLAAYDLSPMELYDMIRVSSLNVPLGTVSTGTKDVIVR--- 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                   +    +    +            ++        D  
Sbjct: 229 ------------------FMGELNYIDTFEDMIIKSNGNTLRVKDVADVVFTTEDPEDIS 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L+       I    +  S     + A      L +   P  +  V          S S 
Sbjct: 271 YLSGKESIAVIVEKSSDGSTIDLNKRALEALESLESIMPPDTVYNVLLDTSIDINRSISN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      L  IVL++ +   +  L+   ++ + VI T A L+L G +L L S+ G+ 
Sbjct: 331 VSSTAVQGLILATIVLYLFLKNMRATLLVSAALPVAVIFTFAFLALNGTSLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR--AYSTIFDSNITALIATVVLFF 479
           +G+G+  D++++V + I     + +S         +   A S I  +  T ++   +LF 
Sbjct: 391 IGVGMLTDNSVVVVDNIYRHMTELKSPVMEASDNATTEVAMSVIASALTTMVVFIPILFI 450

Query: 480 FGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLIP 535
            G      R  A ++  S L ++  +++++  +    +  K    K   I    +   + 
Sbjct: 451 PGIAREIFRDLAYSIIFSNLAAIIVSLTLIPMLASRFLTNKADITKEGKIFGTVKSKYLK 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                   R +  G+ I +      I   F          +G   +     + +DL   +
Sbjct: 511 LINWAVNNRWKTIGITIFVFVFSIGIVPKFLKMEFMPKQDQGRYSIVAELGKGLDLEKSK 570

Query: 596 SNLESLQIGDISFQNFDG 613
           +  + ++   I+  N   
Sbjct: 571 AIAKEIENIVINDPNTQS 588



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 78/214 (36%), Gaps = 8/214 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                          V    + + + +      P  ++        +   +   +    +
Sbjct: 786 TDRIYSVTVSANDGGVGMKAIQDKLVEAYKSTNPPKSVDYRWGGNSENLSDATSQLGFAL 845

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            IS   +   +  +F+ +   +  I ++ L +   +    + G   ++  +  V+ L G 
Sbjct: 846 GISIFLIYALLAAQFENFVLPVIIIGSIPLALVGIVWGLLVTGQPVDIMVMIGVILLAGV 905

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            VN+ +V+ D ++            ++ + +S    L   + T+M   + +LP+++    
Sbjct: 906 VVNNAIVLIDFIK---MTRERGSERQEAVIESCRTRLRPILMTTMTTVLGMLPLSLGIGE 962

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           G  +    AI + FG+  +   ++ +  PIL  +
Sbjct: 963 GSEIYRGMAITVMFGLTFSTLLTLVVI-PILYTL 995



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/360 (12%), Positives = 111/360 (30%), Gaps = 9/360 (2%)

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           + L        +    +     L   F ++  +  + +F    K+++    +     + +
Sbjct: 138 LTLVIMMSAPNKAELSSFVEEYLKPKFESLPGIGQVNVFGNPDKQLQIQIDSDKLAAYDL 197

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                   +R     V +  + +     ++   G    ID    + +    N      V 
Sbjct: 198 SPMELYDMIRVSSLNVPLGTVSTGTKDVIVRFMGELNYIDTFEDMIIKSNGNTLRVKDVA 257

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                +    DIS+ +       +V             R LE ++   + + P +     
Sbjct: 258 DVVFTTEDPEDISYLSGKESIAVIVEKSSDGSTIDLNKRALEALESLESIMPPDTVYNVL 317

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I+R +       V    +A ++           L     L + +  T  F AL 
Sbjct: 318 LDTSIDINRSISNVSSTAVQGLILATIVLYLFLKNMRATLLVSAALPVAVIFTFAFLALN 377

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   NL ++  +   +G   ++ VVV D +     +        +  D +  E     + 
Sbjct: 378 GTSLNLISLMGLSIGVGMLTDNSVVVVDNI--YRHMTELKSPVMEASDNATTEVAMSVIA 435

Query: 775 TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++   +  +P+    G    +    A      I+ +  ++I ++  ++  +      N 
Sbjct: 436 SALTTMVVFIPILFIPGIAREIFRDLAYS----IIFSNLAAIIVSLTLIPMLASRFLTNK 491


>gi|120403568|ref|YP_953397.1| preprotein translocase subunit SecD [Mycobacterium vanbaalenii
           PYR-1]
 gi|119956386|gb|ABM13391.1| protein-export membrane protein SecD [Mycobacterium vanbaalenii
           PYR-1]
          Length = 599

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 125/579 (21%), Positives = 220/579 (37%), Gaps = 75/579 (12%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +   +   IG  + +     +                LG+DL+GG+ + L     D  
Sbjct: 11  RYLALFLAMLIGAYLLVFLTGDKKPDP-----------KLGIDLQGGTRVTLTARTPDGS 59

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKEN--IADKVTLFLQG 121
                 L      + + +   G+    +      + ++       E   +     L+++ 
Sbjct: 60  PPSRESLDQAKQIIGARVDGLGVSGSEVIIDGQNLVITVPGDDTSEARSLGQTARLYIRP 119

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVL---------------------------------- 147
           V   +             +      +                                  
Sbjct: 120 VVHVIPSAAAAPPEQAGPQGVPPGGVPGVPPGAVPGLPPGAVPPGAPPGAVPGLPPAAVP 179

Query: 148 --------SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
                   +     +        +               +      + + +      QD 
Sbjct: 180 PEAPPASDTPAPQPRPFPQQPAPTPPPGPSPAPGPTPPPAPGTAPPADQDVPLATRIQDE 239

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD----------SDGNQYLVEDKVEI 249
            RLRQ   +T +      L   + +     V    D           DGN+  + DK  I
Sbjct: 240 KRLRQ---STEQAIQILALQFQATRCGQEDVLAGNDDPNLPLVTCSQDGNEVYLLDKSII 296

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           SG  +  A++  + +  + VVD+ F    A+ + + T  N+G   A VLD +V++APVI 
Sbjct: 297 SGEQIANASSGLNQQAGEYVVDVEFKSDAAKVWADFTAANVGTQTAFVLDSQVVSAPVIQ 356

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           +AIP G+ QI+G FT  TA  LA +L+ GSLP+     E   V A LG  S+  G  A V
Sbjct: 357 EAIPGGRTQITGQFTQTTARELANVLKYGSLPLSFESSEAETVSATLGLSSLRAGLIAGV 416

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIG 425
            GLV ++L+ ++ Y   G++   S+  +  +  A+L LL      TL L  IAG+++GIG
Sbjct: 417 VGLVAVLLYSLLYYRVLGVLIALSLTASGAMVFAILVLLGRYISYTLDLAGIAGLIIGIG 476

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           +  DS ++  ERI++E R+ +S   ++  G++RA  TI   N   L+A  VL+F   G V
Sbjct: 477 MTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTLLAAAVLYFLAVGQV 536

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +GFA T+GL+ ++ +     +   ++    +        
Sbjct: 537 KGFAFTLGLTTILDIVVVFLVTWPLVYMASKSTLWAKPS 575



 Score = 89.0 bits (218), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 29/259 (11%), Positives = 82/259 (31%), Gaps = 14/259 (5%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
              G   + V                ++        +       +++     G +    +
Sbjct: 310 QQAGEYVVDVEFKSDAAKVWADFTAANVGTQTAFVLDSQVVSAPVIQEAIPGGRTQITGQ 369

Query: 634 VLEMVKKKITEIVPL------STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             +   +++  ++              E V   +    +R G++  ++  +A+L+Y  + 
Sbjct: 370 FTQTTARELANVLKYGSLPLSFESSEAETVSATLGLSSLRAGLIAGVVGLVAVLLYSLLY 429

Query: 688 FKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           ++    L A  +L            L G       +L  +A ++  IG + +  VV ++R
Sbjct: 430 YRVLGVLIA-LSLTASGAMVFAILVLLGRYISYTLDLAGIAGLIIGIGMTADSFVVFFER 488

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           ++  ++      SFR  + +         V  +    ++   +       +  FA  +  
Sbjct: 489 IKDEIRE---GRSFRSAVPRGWARARKTIVSGNAVTLLAAAVLYFLAVGQVKGFAFTLGL 545

Query: 804 GIVVAASSSIFIAAPILLF 822
             ++       +  P++  
Sbjct: 546 TTILDIVVVFLVTWPLVYM 564


>gi|330828882|ref|YP_004391834.1| AcrB/AcrD/AcrF family protein [Aeromonas veronii B565]
 gi|328804018|gb|AEB49217.1| AcrB/AcrD/AcrF family protein [Aeromonas veronii B565]
          Length = 1020

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 71/617 (11%), Positives = 172/617 (27%), Gaps = 44/617 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              W+ +   +I  +GLL           +  FP     +             +      
Sbjct: 10  RPIWVAVSIVLIFLLGLLSI-----RGLPIQLFPDIDRPHL---------NISVSWRSAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++    ++     V +      +I + FA     +     V   L  V
Sbjct: 56  PQEMESEITDPIEQEMQGVQGLKSLVSNSYPGFTEIDMEFALGTDMQRAQLDVISRLNRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L        +   +  +         +        +    I  +   ++   E    
Sbjct: 116 -SGLPDKIGGPYVNNYSSNDTLTFFFIQQLPGAQGVIDDHQALIEARVKPELERIEGVST 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+    DP R  +L      ++       +   G                 
Sbjct: 175 VAVEGINERQIQIRFDPYRAAELGVEIPVLASRATTGWDVSAGT---------------- 218

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                 +                 + + D   D       +      +          R+
Sbjct: 219 ------LDIGRWEYKLRFAGRYDVETLGDKVVDWRDGLPIYLRDVAEVRVAREENPVLRI 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG--SLPIKLNIVEERNVGADLGSDS 360
                   A    ++  +   ++E        L                        + S
Sbjct: 273 QNGNTAIAAQIFKESGANALASLEAIKARVNELNREVLEPVGLHMEQSFDASLYINRAVS 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           +      +   L   +L++ +   K  L+   +I ++++LT  LL ++  TL + S+AGI
Sbjct: 333 MVTANLGLGVLLSCAILWLFLRQLKATLMIALAIPISIMLTFCLLKVMDRTLNIISLAGI 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
              +G+ +D+ I+V E I   + +   S   +   G  + ++ +  S +T +   + +  
Sbjct: 393 AFAVGMVLDAAIVVLESIYRRHERGDLSKTEAALEGTRQVWTALVASTLTTVAIFLPVLL 452

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A+T+  ++ +SM  A+ ++ A+    + ++   +     L +      
Sbjct: 453 LNDVEGQLFADLALTIACAVTVSMLVAVIVLPAVAARWMGHET-LTDPYESLWQRTTRHV 511

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                  R R+  + + +     +   L           +  + + +     V+L   R 
Sbjct: 512 IRWTSTSRQRWTVITLMMSLPALATWALLPKMDYLPDVKRDAVDVWMNFTPGVNLKAQRE 571

Query: 597 NLESLQIGDISFQNFDG 613
            +    I  ++      
Sbjct: 572 EVIDTLIARLAPYMKGE 588



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 86/280 (30%), Gaps = 16/280 (5%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVD-----LSVVRSNLESLQIGDISFQNFDGEKN 616
             L      Y + F G   +  L ++ VD        +R   E     + +        N
Sbjct: 217 GTLDIGRWEYKLRFAGRYDVETLGDKVVDWRDGLPIYLRDVAEVRVAREENPVLRIQNGN 276

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             +  Q            LE +K ++ E+           +       L     V ++ +
Sbjct: 277 TAIAAQIFKESGANALASLEAIKARVNELNREVLEPVGLHMEQSFDASLYINRAVSMVTA 336

Query: 677 AIAMLIYI------WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            + + + +          +    L     + + I  T     +     N+ ++A +   +
Sbjct: 337 NLGLGVLLSCAILWLFLRQLKATLMIALAIPISIMLTFCLLKVMDRTLNIISLAGIAFAV 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  ++  +VV + +    +     +S  +   +   +     V +++      LP+ +  
Sbjct: 397 GMVLDAAIVVLESI--YRRHERGDLSKTEAALEGTRQVWTALVASTLTTVAIFLPVLLLN 454

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              G +    A+ +A  + V+   ++ +   +        
Sbjct: 455 DVEGQLFADLALTIACAVTVSMLVAVIVLPAVAARWMGHE 494



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 78/254 (30%), Gaps = 26/254 (10%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + R V L  +      +    I   +        +              +       I 
Sbjct: 764  PSGRIVPLGELLRVEHDMGPASIFRADGRRSIILQIAPPAGMTMEQVIDTLKNRSFAAIR 823

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF------------KWY 691
             ++P             + + L   G +  + + + +L+ +W  F               
Sbjct: 824  PLLPAGGELRIAGNADSLQQALDNLGTI-FLFAVVILLVLLWGVFASIKDALLVLLTLPL 882

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             ++G +  L L          L  +  +L  +   + L+G  VN+ +++   + +     
Sbjct: 883  ASVGGVLALQLSGL-------LVPLPMDLLTIIGFVILLGLVVNNAILL---VHQTRTAE 932

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S +  +  ++   +     TS+ +   +LP+ +    G  +    A  +  G+  +
Sbjct: 933  RDGMSRQLAVADALQSRMRPIAMTSLTSIFGMLPLMLSPSEGSEIYRGLATVIVGGMSCS 992

Query: 809  ASSSIFIAAPILLF 822
               ++ +    L  
Sbjct: 993  TLFTLILLPAFLRL 1006


>gi|255524055|ref|ZP_05391016.1| acriflavin resistance protein [Clostridium carboxidivorans P7]
 gi|296188488|ref|ZP_06856876.1| heavy metal efflux pump, CzcA family [Clostridium carboxidivorans
           P7]
 gi|255512192|gb|EET88471.1| acriflavin resistance protein [Clostridium carboxidivorans P7]
 gi|296046752|gb|EFG86198.1| heavy metal efflux pump, CzcA family [Clostridium carboxidivorans
           P7]
          Length = 1043

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/563 (12%), Positives = 157/563 (27%), Gaps = 48/563 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + ++ + +  +G+             D  PS                        
Sbjct: 9   RRPAAITMVIAFLIGLGIF-----GYKNLGADLMPSMDVPVIT---------IRTTYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  S +        + R+   +  + F            V   ++ 
Sbjct: 55  NADAIKKDVVKPVEDAVSGISGVDTISSTAREGSGQTVIQFTSETNMNTAFLDVEKAVEK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  +  K +L        S++    N +        ++     +    +       
Sbjct: 115 VQGKLPTNADKPVLSKVDLNASSVLTLSLNGNVPYDQLCSEAD----KVQQAMEKVPGIG 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     QL  + D + L         +       N +          + ++     
Sbjct: 171 NVTLQGSNPKQLTIKLDKNALEYYGVNINSLLSKIKSDNANIPAGQIKQENMNETLRVIG 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E                        + +I+                I          R
Sbjct: 231 EFE--------------------NIDDIKNITVPTANGAIIRLRDIAEIKLDYPDETQLR 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            + +          ++  +    +  A    A ++         I+ +        S S 
Sbjct: 271 RINSKSTIGIDLQKQSDANVVEAVNNAKQQIAKIQKQLPKGVNLIIADDTTTTITSSLSE 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K           IVL + +   +  LV   +I  ++I T  ++  L  TL + S+ G+ 
Sbjct: 331 IKHNLVEGIITTAIVLLLFLRSWRSSLVVLVAIPTSLISTFFMMYELHFTLNMMSLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSL---DMGFSRAYSTIFDSNITALIATVVLF 478
           L IG+ VD +I+V E I+      +    +          A   I   ++   +    + 
Sbjct: 391 LCIGILVDDSIVVLENIQRHLGFEKDPKIAAIEGRNEIGMAAIAITLCDVVIFVPVAFIS 450

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDINPLSRF 531
              G   R F +T+ ++ L S+F + +I   +   +++ K         +    NP+SR 
Sbjct: 451 GMVGKYFREFGLTIAVASLFSLFVSFTITPMLASRLLKKKDSNLQIGLFRKFRNNPISRI 510

Query: 532 FLIPDCIAIQFMRARFWGVGISI 554
           F        +  +A    +  S+
Sbjct: 511 FARFSVFFNKVTKAYSKFLVWSL 533



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/239 (12%), Positives = 75/239 (31%), Gaps = 21/239 (8%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +    + S      +    V          A   +   +  ++  +              
Sbjct: 799  ASVTQNDSPVTESRQDREDVVTLSANMQGRALGDINNEINTRLKALTLPEGYSIKFGGEQ 858

Query: 660  KISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
            K   +     I  +  S I + +I + +   +      + +L   +    G  AL G   
Sbjct: 859  KQMAQAFTPLIEVLFASFILVYMILVVLYESFLTPFIRMISLPCAMIGAFGILALTGKTL 918

Query: 719  NLTAVAAVLTLIGYS-------VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            N+ ++  ++ L G +       ++    +  R           ++ R+ + ++    L  
Sbjct: 919  NMMSMIGLIMLDGLASKNGTLLIDYTNTLMSR----------GLNLREALIEAGTTRLRP 968

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + T+    + +LP A+    G  +    A  +  G++ +   S  I   +   + D +
Sbjct: 969  IIMTTATMIVGMLPSALALGDGSEMKSGMAWVVIGGMITSTLLSPIILPIVYTLMDDLK 1027



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 78/208 (37%), Gaps = 9/208 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + +  ++K++ + V L    +T         E+    + G+I +AI +L+++    
Sbjct: 295 NNAKQQIAKIQKQLPKGVNLIIADDTTTTITSSLSEIKHNLVEGIITTAIVLLLFL---R 351

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  +L  +  +   +  T           N+ ++  +   IG  V+D +VV + +    
Sbjct: 352 SWRSSLVVLVAIPTSLISTFFMMYELHFTLNMMSLMGLSLCIGILVDDSIVVLENI---Q 408

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +        +    +  NE    ++  ++   +  +P+A   G V      F + +A   
Sbjct: 409 RHLGFEKDPKIAAIEGRNEIGMAAIAITLCDVVIFVPVAFISGMVGKYFREFGLTIAVAS 468

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833
           + +   S  I   +   +   +  N +I
Sbjct: 469 LFSLFVSFTITPMLASRLLKKKDSNLQI 496


>gi|318604295|emb|CBY25793.1| putative integral membrane efflux protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 729

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 68/786 (8%), Positives = 186/786 (23%), Gaps = 73/786 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + +++  +I  +G +      L    ++++P   P               + +   
Sbjct: 7   RRPKFAIVIALVITIVGWVS-----LHVIPVEQYPDITPPV-------------VSVSAV 48

Query: 62  EDDFVNGFLQMYS-DELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVT 116
                   +       L + +     +         N   +++++FA     +  A +V 
Sbjct: 49  YPGASARDVAQTIASPLEAQVNGVSNMLYMESTSGNNGSYQLSITFASGTDPDMAAVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V+++L  +  +N +         ++       +    A+  S     Q  D I  
Sbjct: 109 NRISQVSAQLPAEVNENGISVRKRASNLLLGVSVFSPKQTHDALFVSNYTSIQLRDAIAR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P R+  L  +   +       N        G       
Sbjct: 169 INGVGDVQVFGARDYSMRVWLNPQRMESLNVSVQDIIAALQQQNVQAAAGQIGSSPSTPD 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  +                    +    I                 +      
Sbjct: 229 QQQTLTISGR--------------RLSDPQEFANVIIRSNPQGGMIRLGDVARVALGAQN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +            A L    LP +       ++    
Sbjct: 275 YQVSAAQNQTESAFLVVYPVPGANALNVANGVRDEMARLPTSFLPEEDQGYFFVSLQLPD 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G+      T        +                  +  +  ++ +   SLL    +  +
Sbjct: 335 GASLNRTQTVMDQMYQQV----------------TANDAVEDVIKITGFSLLSGNNSPNA 378

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              IV+               I +     Q+   ++      A +    + + +  +   
Sbjct: 379 GFAIVMLKPWGQRP------HIDQVLANIQANLAAIPSAMIMAVNPPAIAGLGSA-SGFD 431

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           L            +      +I        +  +           ++ I+      L   
Sbjct: 432 LRIQALLGQTPQELAQVSQGIIFAANQDPKLNRVFTTFSASVPETNLSIDRDRAALLQVP 491

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I        G   +  F++ +         +            + +      + V  
Sbjct: 492 VSRIFQTLQTSLGGMNAGDFTLNNRMFRVQLQNDMDFR---QRTAQINSLNVRSDNGVLV 548

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L +L     S                  G +       + +      +        +  
Sbjct: 549 SLANLVTLTPSVGAPFISNFNQFPSVAISGSAADGASSGQAMAAMEALLAQNLPQGYSYS 608

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFAL 713
                 +E    G V  I  A  +  Y+++      W   L  I +++  +   +   + 
Sbjct: 609 WSGMSWQEQQTGGQVVFIYLAALVFAYLFLVTQYESWSIPLVVILSVVFAVGGAVAGLSA 668

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            G   ++ A   ++ LIG +  + +++  + + R+         +          +    
Sbjct: 669 MGFANDVYAQIGLVLLIGLAAKNAILIVEFSKARRE-----EGATIAQAAQDGAKQRFRA 723

Query: 772 SVYTSM 777
            + T++
Sbjct: 724 VMMTAI 729


>gi|219685906|ref|ZP_03540710.1| acriflavine resistance protein [Borrelia garinii Far04]
 gi|219672548|gb|EED29583.1| acriflavine resistance protein [Borrelia garinii Far04]
          Length = 1070

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 93/641 (14%), Positives = 201/641 (31%), Gaps = 34/641 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H       
Sbjct: 9   KPITMLILFSLLMMISLYT-----FSRLKVDLLPGIDIP---------QISIHTAYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K       +  +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSTSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + E+I      +   +    
Sbjct: 115 KSLLPSKSQAPRIFRYNLKNIPVMEITINSVRPVSELKRYADEVI---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSRKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NIIENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  V++SG   +          +K     S     A         NI      + +   
Sbjct: 222 LEYLVQVSGKFKSIEEIGNVVIAYKIPDISSGINSSAIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVMREIEKLKLSMPKDMKLEIASDSTNFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + +ILT  L+  L  ++ + S+AG+ L
Sbjct: 342 VNSAYFGAILAIFVIFFFLRSFRATIIIGISIPIAIILTFCLMYFLNISINIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S +T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTLTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + F+ T+ +S+ +S+  AI +V  +    +        +I       +   
Sbjct: 462 ELGVYGDFFKDFSFTIVISLGVSLLVAIFLVPVLSSHYVGLYTSFQKNIKNAFIRRIDTF 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
             +I +     +   ++I+ +   I  L       G  F G   L V        + +  
Sbjct: 522 FASIYYFLEFLYINLLNIVLNHKLIFGLIVFFSFIGSLFLGL-LLDVTTFARGKENSIVI 580

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           NL      ++ +  F   K   +      G     + +   
Sbjct: 581 NLNFPNKTNLEYAKFYSNKFLEIVKSEAKGYKSIISTLNAD 621



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ + +  + +   +   +   + L      +   T+V   V   I   VP       +
Sbjct: 798  SSIATFEKTNKAESIYRENQALTIHLNAGISPNDNLTQVTAKVIDFINNKVPHKEGTVLK 857

Query: 656  IVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            + G       I      +I ++ I +   +  +F+ +      I T+ L     +    L
Sbjct: 858  VEGEYDEFSNIMNQFKIIITMAIIVVFGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFL 917

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++ A   +L L+G  VN  +V+ D       L       R+ I +S    L   +
Sbjct: 918  AGEKLSIFAAIGMLMLVGVVVNTGIVLID---YTGLLIKRGFRLRESIIESCRSRLRPIL 974

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +S+ + I ++PMA     G  ++   A     G+  +   ++F    +     +
Sbjct: 975  MSSLTSIIGLIPMAFSSGSGNELLKPIAFTFIGGMTASTFLTLFFIPMLFEVFSN 1029



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/261 (10%), Positives = 77/261 (29%), Gaps = 17/261 (6%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +      ++     +L      +             V+ +           V+  ++K
Sbjct: 259 IEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVMREIEK 313

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               +     ++        I   +          + +A+ +  +    +   +    ++
Sbjct: 314 LKLSMPKDMKLEIASDSTNFIKASISTVVNSAYFGAILAIFVIFFFLRSFRATIIIGISI 373

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + I  T        I  N+ ++A +   IG  V+  +VV D +    K           
Sbjct: 374 PIAIILTFCLMYFLNISINIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLISS 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSIF 814
                 E +     +++ +     P  ++       G     F+  +   + V+   +IF
Sbjct: 431 SILGAQEMMLPITSSTLTSICVFGPFLIFKSELGVYGDFFKDFSFTIVISLGVSLLVAIF 490

Query: 815 IAAPI---LLFIYDWRAKNAR 832
           +   +    + +Y    KN +
Sbjct: 491 LVPVLSSHYVGLYTSFQKNIK 511


>gi|295707077|ref|YP_003600152.1| acriflavin resistance efflux permease [Bacillus megaterium DSM 319]
 gi|294804736|gb|ADF41802.1| acriflavin resistance efflux permease [Bacillus megaterium DSM 319]
          Length = 1036

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 184/692 (26%), Gaps = 46/692 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L   +   GL            L+  P                        
Sbjct: 9   LKNKFAVWLLTLFVIIAGLYSGF-----NMKLETIPDISTPVVT---------VSATYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++    L        S  +    I + ++ S+  E   D+V   L 
Sbjct: 55  ATPEQVADKVSKPIEQKLQGLSGVDTVSSSSYENMATIQVEYSFSKDMEKAEDEVRRALS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  D ++  +   +  +  I+    ++        E +  +    + Q+   +  
Sbjct: 115 NV--DLPDDVEEPNVSRQSISDFPII--SLSVSDDKKSLEELTKYVKNTVVPQVEKVQGI 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S   + +        +L+QL      +       +       + +   + S    
Sbjct: 171 SSVSVSGEQVEEAELVFKQDKLKQLGLDEDTVKKLIQASDAKVPAGTYTMDGSQKSVVVD 230

Query: 241 YLVEDKVEISGIHL--------NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
             +  + ++  + +                 +              +    ++      K
Sbjct: 231 GKMTTEKDLENLEIPAVPSEGAAQDQQQGMSQKQTQGAVQQAPSAASIPTVKLKEIADIK 290

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                                      +    +         L   +  + +        
Sbjct: 291 VTGKAESISRTNGKPSIAVQVVKAKDANTVNVVNDIKEKMNSLEKKNKDLHV-DNIFDQG 349

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S         I A   +I++ + +   +  ++A  SI L++++ +  L  +  +L
Sbjct: 350 KPIEDSVHTMLNKAIIGAVFAVIIILLFLRDIRSTIIAVISIPLSLLIAILALKSMDISL 409

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ---SVFCSLDMGFSRAYSTIFDSNIT 469
            + ++  + + IG  VD +I+V E I       +        +       +  IF S I 
Sbjct: 410 NIMTLGAMTVAIGRVVDDSIVVIENIYRRMAYQEEKLKGKDLIVAATKEMFVPIFSSTIV 469

Query: 470 ALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------ 520
            +   + L    G        FA+T+  ++L S+  A+++V  +   + +          
Sbjct: 470 TVAVFLPLGLVEGPVGELFLPFALTVVFALLASLLVAVTLVPMLAHSLFKTNVKVKEEKP 529

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
             +            +   I F  A    VG   L     +  L +              
Sbjct: 530 SKLAHGYKRILNWTLNHKLISFGLAVLLLVGSLFLVPSIGVSFLSSDQEKTLTLTYTPKA 589

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFD-------GEKNFLVRLQYQPGDSVAQTR 633
               ++     +   + L           +F        G KN ++       D+    +
Sbjct: 590 GQSQSDVEKAANRAEAYLMKRDGVKTVQYSFGEGNSFNPGSKNNVLTFVQYDEDTQNFDK 649

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
             + V K + +        +        +  L
Sbjct: 650 EQDKVLKALNKQANQGEWGSMNTASSGSNNSL 681



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 92/268 (34%), Gaps = 7/268 (2%)

Query: 554  ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +         +  +      DF    +L            V  N         +      
Sbjct: 756  LTTIQKDGNEINVYLPKEKEDFSTFAELSSTKVTSQTGQEVTLNEVVDIKKGKTSNTVTR 815

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              N +         S     V   V+K++ +I   S +        +   +   +  + +
Sbjct: 816  RDNKIYAEVSADIKSDDVGGVSSNVQKEVKKIDLPSDMDINFGGASEQINDSFSQLGIAM 875

Query: 674  IISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + +   +   + + F    A  AI  +L   +   L    + G   +++++   L LIG 
Sbjct: 876  LAAIGIVYFVLVLTFGGGLAPFAILFSLPFTLIGALVALLISGETISISSMIGALMLIGI 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--G 790
             V + +V+ DR+   +      +S R+ + ++    L   + T++A   ++LP+A    G
Sbjct: 936  VVTNAIVLIDRV---IHKEQEGLSTREALLEAGMTRLRPILMTAIATIGALLPLAFGFEG 992

Query: 791  GSVI-GSFAIPMAFGIVVAASSSIFIAA 817
            G +I     + +  G+  +   ++ I  
Sbjct: 993  GGLISKGLGVTVIGGLTSSTLLTLIIVP 1020



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 91/248 (36%), Gaps = 10/248 (4%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            ++++     +   +        +  ++ +  ++V     ++     + +      + N 
Sbjct: 286 IADIKVTGKAESISRTNGKPSIAVQVVKAKDANTVNVVNDIKEKMNSLEKKNKDLHVDNI 345

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
              G  I   +       +I +  A++I +         + A+ ++ L +   +      
Sbjct: 346 FDQGKPIEDSVHTMLNKAIIGAVFAVIIILLFLRDIRSTIIAVISIPLSLLIAILALKSM 405

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  V+D +VV + + + M      +  +DLI  +  E       
Sbjct: 406 DISLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMAYQEEKLKGKDLIVAATKEMFVPIFS 465

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI---------YD 825
           +++      LP+ +  G V   F +P A  +V A  +S+ +A  ++  +           
Sbjct: 466 STIVTVAVFLPLGLVEGPVGELF-LPFALTVVFALLASLLVAVTLVPMLAHSLFKTNVKV 524

Query: 826 WRAKNARI 833
              K +++
Sbjct: 525 KEEKPSKL 532


>gi|216263912|ref|ZP_03435906.1| acriflavine resistance protein [Borrelia afzelii ACA-1]
 gi|215979956|gb|EEC20778.1| acriflavine resistance protein [Borrelia afzelii ACA-1]
          Length = 1070

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 90/604 (14%), Positives = 194/604 (32%), Gaps = 33/604 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   + V     
Sbjct: 9   KPITMLILFSLLMMISLYT-----FSRLKVDLLPGIDIP---------QISINTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S LK          +  + ++L F      + + +++   L+ V
Sbjct: 55  PKEVEESVSRVLESGLSSLKNLKNIYSISSKENSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSRAQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +K+S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSKVSSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  V++SG   +          +K   + S   +           NI      + +   
Sbjct: 222 LEYLVQVSGKFKSIEEIGNVVIAYKIPDNSSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSITVSNVVTGEIEKLKLSMPKDMRLEIASDSTNFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+  +  +L + S+AG+ L
Sbjct: 342 VSSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFCLMYFVNISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMMPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + F+ T+ +S+ +S+  AI +V  +    +        +I       +   
Sbjct: 462 ELGVYGDFFKDFSFTIVISLGVSLLVAIFLVPVLSSHYVGLYTSFQKNIKSTFIRKIDAF 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
             +I +     +   ++I+ +   I  L       G  F G +      +R  + S+V +
Sbjct: 522 FASIYYFLEFLYINLLNIVLNHKLIFGLIVFFSFIGSLFLGLLLDVTTFDRGKENSIVIN 581

Query: 597 NLES 600
               
Sbjct: 582 LNFP 585



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 87/235 (37%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ + +  + +   +   +   + L      +   T+V   V   I   VP       +
Sbjct: 798  SSIATFEKTNKAESIYRENQALTIYLNAGISPNDNLTQVTAKVVDFINNKVPHKEGTVLK 857

Query: 656  IVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            + G       I     + ++++ + +   +  +F+ +      I T+ L     +    L
Sbjct: 858  VEGEYNEFSNIMNQFKIIIMMAIVVVFGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFL 917

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++ A   +L L+G  VN  +V+ D       L       R+ I +S    L   +
Sbjct: 918  AGEKLSIFAAIGMLMLVGVVVNTGIVLVD---YTGLLIKRGFGLREAIVESCRSRLRPIL 974

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +S+ + I ++PMA     G  ++   A     G+  +   ++F    +     +
Sbjct: 975  MSSLTSIIGLIPMAFSSGSGNELLKPIAFTFIGGMTASTFLTLFFIPMLFEVFSN 1029



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V   ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSITVSNVVTGEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMRLEIASDSTNFIKASISTVVSSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFCLMYFVNISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F+  +   + V+   +I
Sbjct: 430 SSILGAQEMMMPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFSFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511


>gi|294630440|ref|ZP_06709000.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292833773|gb|EFF92122.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 767

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 151/570 (26%), Positives = 251/570 (44%), Gaps = 37/570 (6%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             +I +        +    A ++++E++R R+D +G++E T+ R G+HRI+++LPG QDP
Sbjct: 37  GTQIVLETRSTPTAEADRAATDRTLEVLRGRVDALGVAEPTLVRSGAHRIIVELPGVQDP 96

Query: 200 SR--LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE--------I 249
            +          A            + G        +   G Q L ++ V+        +
Sbjct: 97  KKGGRGARPHRAAHRPPGPRPGPAPRTGRRRRRESTKAGSGEQVLPDESVQRLRLAATAM 156

Query: 250 SGIHLNGATANFDPKTH-KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD--------- 299
           +G  + GA A FDP+T     V + FD  G  R+ ++T +   +P               
Sbjct: 157 TGEDVKGADARFDPETGAGWHVTVDFDRAGRERWAKLTGEAACRPAGDPARRVAIVLDGR 216

Query: 300 ----GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                +V  +      I  G  QI+G+F    A  LA ++  G+LP+ +  VE+  VG  
Sbjct: 217 IISAPQVDPSVACGTGIAGGSTQITGSFDDAEARELALLINGGALPVPVETVEQHTVGPT 276

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           LG+ +I     A V G  L  LF+IV+Y   G++A  ++    +++ A L+ LGATLTLP
Sbjct: 277 LGARAITASAWAAVIGTALTALFIIVVYRLMGVLAAVALLAYGLISYAALAALGATLTLP 336

Query: 416 SIAGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            +AG VL IG+AVD+N+LV ER REE   R   +   +L  GF  A+S I DSN+T LIA
Sbjct: 337 GLAGFVLAIGMAVDANVLVFERAREEYAARVRPTGRSALTAGFRNAFSAIADSNVTTLIA 396

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
             +LFF   G VRGF +T+G+ ++ SM +A+ + R +  F +    +             
Sbjct: 397 AGLLFFLASGPVRGFGVTLGIGVVASMISALVVTRVLADFAVSRAWVHRRPGVTGLATAG 456

Query: 534 IPD----CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                     ++ MR     +  S +  + +   +   GL+ G++F GG  L     R V
Sbjct: 457 RVRAALARRELRPMRRPRRWLAASAVALVLAGSGIAVRGLDLGLEFTGGRMLQYDTGRAV 516

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D    R+ L          Q                          + V + +  +   +
Sbjct: 517 DPERARTALADAGFPGAVVQTAGETG-------LTVRTGELTDARADAVTRTVGALGGGA 569

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                E++GP +  EL R  ++ + ++   
Sbjct: 570 EKVRDELIGPSLGEELRRGALISLGVALGG 599



 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 62/179 (34%), Gaps = 2/179 (1%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VGP +    I       +I      ++I + ++    + A   L+     +    A 
Sbjct: 270 QHTVGPTLGARAITASAWAAVIGTALTALFIIVVYRL-MGVLAAVALLAYGLISYAALAA 328

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    L  +A  +  IG +V+  V+V++R R+         + R  +            
Sbjct: 329 LGATLTLPGLAGFVLAIGMAVDANVLVFERAREEYAARVR-PTGRSALTAGFRNAFSAIA 387

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++   I+   +       +  F + +  G+V +  S++ +   +  F       + R
Sbjct: 388 DSNVTTLIAAGLLFFLASGPVRGFGVTLGIGVVASMISALVVTRVLADFAVSRAWVHRR 446


>gi|189219406|ref|YP_001940047.1| Cation/multidrug efflux pump [Methylacidiphilum infernorum V4]
 gi|189186264|gb|ACD83449.1| Cation/multidrug efflux pump [Methylacidiphilum infernorum V4]
          Length = 1084

 Score =  139 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 64/631 (10%), Positives = 161/631 (25%), Gaps = 59/631 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + +   GLL      + +     +P      +                  
Sbjct: 9   RRPVAAWMLMAALVFFGLLSLFSLGISRFPDVTYPVITVVTQ--------------WPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    + +   ++       +M      I L F   +  +    +V   ++ 
Sbjct: 55  APEVMESEIVDPLENVLVSVQGIKDIESTMLPGIANIKLEFYIDKDIDAALQEVNSKVRS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D     +    + +  I+      D+   + +     +     D+  +     
Sbjct: 115 VR--LPTDVNPPQIFKINQDDNPIMWLAVTWDKPFKNLV---RYVDNHIRDRFMLVHGIG 169

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                           D  +L     +   +       N          +    +     
Sbjct: 170 DIQLGGWADRNFRIWLDRKKLDLFQLSPTDIRDTLQAENLELGAGYLESKTNEINVRVMG 229

Query: 242 LVEDKVEISGIHLNGATAN----------------------------FDPKTHKPVVDIS 273
               + E+  + LN   +                              +P       ++ 
Sbjct: 230 EARSEYEMRSLALNHRASGAGGIPITGVGGSQGGGMGTTGAGSNQFLTNPAMTSAASNLL 289

Query: 274 FDEMGARRFF--EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
            +  GA   +        +   +                         +          L
Sbjct: 290 SNTRGASSVYLPLSLVAEVEDGIMDPTRLSRSDGKAAIGLGLQKLRGYNEIAVAREVKEL 349

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
              L+              +      +    + T  +       V  + +   +  L   
Sbjct: 350 VKELKKELPEGMSIGPRFDSSVYTQEAVHETEFTLLLTIFFTASVCLLFLGSLRTTLNVL 409

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
           FSI ++++ +      LG TL   ++  + L +G+ VD +I+V E I       +    +
Sbjct: 410 FSIPISILGSFIFFKFLGYTLNFFTLLALSLAVGIVVDDSIMVLENITRHKNLGKDPRSA 469

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVR 508
              G +        + ++ +     + F G   G  +  F +T+ +++LIS+  A+++  
Sbjct: 470 ALDGANEVSFAALAATLSIVSVFCPILFVGGVVGKFLSQFGLTLSIAVLISLLEALTLAP 529

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM------RARFWGVGISILFSICSIC 562
             +   +     +  +              A+         + R   + +S      S+ 
Sbjct: 530 MRVAEFLNVGGEERRNFFETWLDHFFWKFAAVYKRLLALALKKRGIVLILSFSIFFLSLR 589

Query: 563 LLFT-HGLNYGIDFKGGIQLGVLANRPVDLS 592
           L    H      +  G   + +       L 
Sbjct: 590 LFPVLHKELSPSEDMGIALIRIETPVGSSLE 620



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 81/221 (36%), Gaps = 6/221 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E    V   +                 +I       T         + ++E        +
Sbjct: 850  ENRRRVITLFANVKPEYSQARALDYAMEICRKYLPPTYTVQPAGASQTAKETFSAFPYAL 909

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                I   + + I+F  + F L  +  +   IT  + F  L  +  NL +   ++ L+G 
Sbjct: 910  GFGIIIAYMVMGIQFNSFLFPLIILCAIPFSITGAILFLYLSHLSLNLYSGIGMILLMGL 969

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            ++ + +++ + +  N K +   +  ++ I ++    L   + TS+A   S +P A+    
Sbjct: 970  AMKNSILLVEFI--NKKRFEEGLETKEAILEASYIRLRPILMTSLATISSAIPAALGLGP 1027

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G  V     I +  GI+V+ S S+F+   I   +     K 
Sbjct: 1028 GAEVRVPLVIVVIGGILVSTSFSLFVVPCIYSLVSKVGGKP 1068



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 66/188 (35%), Gaps = 6/188 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            V E+VK+   E+    +I             +       ++       + +        
Sbjct: 345 EVKELVKELKKELPEGMSIGPRFDSSVYTQEAVHETEFTLLLTIFFTASVCLLFLGSLRT 404

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  + ++ + I  +  FF   G   N   + A+   +G  V+D ++V + +    +   
Sbjct: 405 TLNVLFSIPISILGSFIFFKFLGYTLNFFTLLALSLAVGIVVDDSIMVLENI---TRHKN 461

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAA 809
                R       NE    ++  +++      P+   GG V   +  F + ++  ++++ 
Sbjct: 462 LGKDPRSAALDGANEVSFAALAATLSIVSVFCPILFVGGVVGKFLSQFGLTLSIAVLISL 521

Query: 810 SSSIFIAA 817
             ++ +A 
Sbjct: 522 LEALTLAP 529


>gi|91775097|ref|YP_544853.1| acriflavin resistance protein [Methylobacillus flagellatus KT]
 gi|91709084|gb|ABE49012.1| acriflavin resistance protein [Methylobacillus flagellatus KT]
          Length = 1051

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/545 (13%), Positives = 165/545 (30%), Gaps = 33/545 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  +G+++A         +   P       I++   L G           + +   
Sbjct: 26  VMTLLVSLGMMLAGWLAFGLLPVAPLPQVDFPT-INVTASLAG--------ANPETMASS 76

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +     +        S  Q    ITL F   +  +  A +V   +    S L   
Sbjct: 77  VATPLERSLGRISGISEITSSSSQGSTSITLQFNLDKDIDVAAREVQAAINAAASMLPSG 136

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                            +    +        E           +I   +   Q   +   
Sbjct: 137 MPNRPSYRKINPADMPSMV-LTMTSRTKSMGELYDLATNMVSRKISQVQGVSQVNVAGSS 195

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           L  +  + +P  L Q   +   +       N +                           
Sbjct: 196 LPAVRVDINPDALVQQGLSLDAVRNAISAANGNGPKGYLQND------------------ 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
              +     A+      K    +                 +   +  + +          
Sbjct: 238 --EYRWQLDADDRLLRAKDYRSLIIATNQGAVTRLSDVARVYDSVEDIRNVGFHNNQRAI 295

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             + S +   +    IE        +++         V E        S    + T  I 
Sbjct: 296 LLMVSREPGANIIEMIERIHAELPSIQSSLGEDIKLTVVEDRSPNIRASLHEAELTLVIA 355

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV++V+F+ +   +  L+   ++ +++I T A++ L G +L   ++  +++  G  VD
Sbjct: 356 VALVILVVFLFLRNSRATLIPALAVPVSLISTFAVMYLCGYSLNNLTLMALIIATGFVVD 415

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVR 486
             I+V E I +   + ++   +   G      T+   + + +   + L F G   G   R
Sbjct: 416 DAIVVVEHISKRIEQGEAPLRASLRGAREVGFTVVSMSFSLVAVFIPLLFMGDITGRLFR 475

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            FA+T+ ++IL+S+F ++++   +  +++R +   +I+             I IQ    +
Sbjct: 476 EFAVTLSVAILVSLFVSLTLTPMLCAYLLRRQDAATIEGESAPERRRAGLFIRIQRRYRQ 535

Query: 547 FWGVG 551
                
Sbjct: 536 SLAWA 540



 Score = 90.1 bits (221), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 69/202 (34%), Gaps = 6/202 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               R+   +    + +     +   E   P I   L    +  VI  A+ +L+      
Sbjct: 309 EMIERIHAELPSIQSSLGEDIKLTVVEDRSPNIRASLHEAELTLVIAVALVILVVFLFLR 368

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + +  T     L G   N   + A++   G+ V+D +VV + +    
Sbjct: 369 NSRATLIPALAVPVSLISTFAVMYLCGYSLNNLTLMALIIATGFVVDDAIVVVEHI---S 425

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           K      +      +   E     V  S +     +P+   G   G +   FA+ ++  I
Sbjct: 426 KRIEQGEAPLRASLRGAREVGFTVVSMSFSLVAVFIPLLFMGDITGRLFREFAVTLSVAI 485

Query: 806 VVAASSSIFIAAPILLFIYDWR 827
           +V+   S+ +   +  ++   +
Sbjct: 486 LVSLFVSLTLTPMLCAYLLRRQ 507



 Score = 38.5 bits (87), Expect = 5.4,   Method: Composition-based stats.
 Identities = 36/214 (16%), Positives = 84/214 (39%), Gaps = 4/214 (1%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            SNL SL   +   +     +   V   +   +        + ++  + ++     +Q T 
Sbjct: 801  SNLVSLSYNNAPPRIEHEGQFASVTYSFNLPEGGNLEYAKQKIRSALADLKMPLNVQATF 860

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                    +++++    ++ + +++ I + + ++ +   L  ++TL       L    LF
Sbjct: 861  SGTASAQSKVLKQMPWLILAALVSVYIVLGMLYESYVHPLTILSTLPSAGVGALLALILF 920

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                 L A+  ++ LIG    + +++ D     +      +S RD I  +  + L   + 
Sbjct: 921  DTPLTLIALIGIILLIGIVKKNAILMID--FALVAERERGLSSRDAIMDACQQRLRPILM 978

Query: 775  TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            T+MAA +  LP+ ++G         P+   IV  
Sbjct: 979  TTMAALLGALPL-IFGTDGDAPLRRPLGIAIVGG 1011


>gi|46201134|ref|ZP_00207978.1| COG0841: Cation/multidrug efflux pump [Magnetospirillum
           magnetotacticum MS-1]
          Length = 950

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/525 (13%), Positives = 161/525 (30%), Gaps = 40/525 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  IGL   +        + ++P                         
Sbjct: 7   KRPVLAAVVSLLILFIGLRALM-----SLPVRQYPEMTNTVITIT---------TTFPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + D + GF+     +  +  +          Q  ++I      +   E     V   +  
Sbjct: 53  DADMIQGFVTQPLQKAVATAEGIDYLTSRSLQGVSEIKAFIRLNDDPETAMTGVMSKVAE 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L      +++   T +  +      + D++     + +  ++R    ++       
Sbjct: 113 VKSLLPKGINDSIIKKETGQSFASAYLAFSSDRLSQQ--QITDYVMRVVQPKLAAVPGVA 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L Q       +    V  N +         +         
Sbjct: 171 NPELYGGQKFSMRVWLDPEKLAQQGMGPDDLKAALVSNNFTSASGSTKGAY--------- 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       +    A+ D K+ +   ++     GAR        ++           
Sbjct: 222 -----------DVVNTQASTDLKSVEEFRNLVVKHDGARLVRLGEVADVQLGPENDDMSV 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILA-AMLRAGSLPIKLNIVEERNVGADLGSDS 360
                           + +    I      A   L++   P     +   +      +  
Sbjct: 271 FAGDERAIFVGIYTTPEANPLSVIRQVREEALPALQSQLPPGLTAKIAYDSTLFIDAAIR 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A +V++V+F  +   +  ++   ++ L++I    LL  LG ++ L ++  +
Sbjct: 331 EVAKTILEAAIIVMVVIFFFMGSVRSVVIPVVTVPLSLIGVAVLLLSLGFSINLLTLLAM 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     +  S   +  +G       +    IT       + F 
Sbjct: 391 VLAIGLVVDDAIVVVENVHRHIEEGLSPVRAALVGTREISGPVISMTITLAAVYAPIAFM 450

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G   G   + FA+T+  ++++S   A+++   M   I+R++  K 
Sbjct: 451 GGLTGSLFKEFALTLAGAVVVSGVIALTLSPMMCSKILRHEDDKK 495



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 76/207 (36%), Gaps = 10/207 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +   L  ++ ++   +      ++ +      RE+ +  +   II  + +  ++    
Sbjct: 296 QVREEALPALQSQLPPGLTAKIAYDSTLFIDAAIREVAKTILEAAIIVMVVIFFFMG--- 352

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +  + T+ L +          G   NL  + A++  IG  V+D +VV + +    
Sbjct: 353 SVRSVVIPVVTVPLSLIGVAVLLLSLGFSINLLTLLAMVLAIGLVVDDAIVVVENVH--- 409

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +     +S          E  G  +  ++       P+A  G   GS+   FA+ +A  +
Sbjct: 410 RHIEEGLSPVRAALVGTREISGPVISMTITLAAVYAPIAFMGGLTGSLFKEFALTLAGAV 469

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           VV+   ++   +P++         + +
Sbjct: 470 VVSGVIAL-TLSPMMCSKILRHEDDKK 495


>gi|322807364|emb|CBZ04938.1| protein-export membrane protein SecD (TC 3.A.5.1.1) [Clostridium
           botulinum H04402 065]
          Length = 422

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 81/198 (40%), Gaps = 4/198 (2%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +    +    K   +           VG  +    +   +   ++    + +
Sbjct: 207 VITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFL 266

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ I ++    L A   L+L I   L  F+       L+ +A  L  IG +V+  V++++
Sbjct: 267 FMLIYYRVP-GLLADIALVLYIVLVLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFE 325

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   T  S +  ++   +  L   + +++   I+ + +   G   +  FA+ + 
Sbjct: 326 RIREELK---TGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLM 382

Query: 803 FGIVVAASSSIFIAAPIL 820
            GI+++  ++I I   +L
Sbjct: 383 IGIILSMFTAIVITRLLL 400



 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 134/385 (34%), Positives = 227/385 (58%), Gaps = 26/385 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +L +   D+V    +++++E+I  R++++G+SE+T+ R G  RI I++PG+ +   +   
Sbjct: 61  MLEEIQADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDS 120

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T ++ F                             +    ++G  +  ATA  + + 
Sbjct: 121 VGKTGELKF--------------------------VGPDKSTILTGKDVKDATAYINQED 154

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           + P V +  +E G ++F + T+  IG+P+A+ +D   LT PV+   I +GKA I+G+ +I
Sbjct: 155 NSPTVGLDLNESGTKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSI 214

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A ++++G+LP+ +  VE R VGA LG++++     A V G+ L+ LFM++ Y  
Sbjct: 215 EEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFLFMLIYYRV 274

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD ++ L ++L LA  S + ATLTL  IAG +L IG+AVD+N+L+ ERIREE +  
Sbjct: 275 PGLLADIALVLYIVLVLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFERIREELKTG 334

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +L+ G+ RA S+I DSNIT +IA +VL+  G GAV+GFA+T+ + I++SMFTAI 
Sbjct: 335 KSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIV 394

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSR 530
           I R ++        + S+    + R
Sbjct: 395 ITRLLLKLGYDIGILNSLACFRVKR 419



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 75/250 (30%), Gaps = 6/250 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++N    ++   +  + + +          +  +        I+ GLDL+GG  ++ E+ 
Sbjct: 7   KSNKGKSVIIFTLLVVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQ 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D      +    + +   + K G+   ++ R+ Q +I +        + + D V    +
Sbjct: 67  ADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDSVGKTGE 126

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                  V P K+ ++T  + + +        +      ++ +    ++  D        
Sbjct: 127 LKF----VGPDKSTILTGKDVKDATAYINQEDNSPTVG-LDLNESGTKKFADATKKFIGQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      +  P  Q      + + T +K         N  K     V          
Sbjct: 182 PIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTV 241

Query: 241 YLVEDKVEIS 250
                   + 
Sbjct: 242 GATLGANALD 251


>gi|117617974|ref|YP_855886.1| AcrB/AcrD/AcrF family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559381|gb|ABK36329.1| AcrB/AcrD/AcrF family protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1020

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 87/709 (12%), Positives = 194/709 (27%), Gaps = 54/709 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD- 61
              W+ +   +I  +GLL           +  FP                  HL + VD 
Sbjct: 10  RPIWVAVSIVLIFLLGLLSI-----RGLPIQLFPDIDRP-------------HLNISVDW 51

Query: 62  ---EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +   +    ++    ++       +      +I L FA     +     V   
Sbjct: 52  RSASPQEMESEITDPIEQEMQGVQGLKNLTSNSFPGFTEIDLEFALGTDMQRAQLDVISR 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L  V S L        +   +  +         +        +    I  +   ++    
Sbjct: 112 LNRV-SGLPDKIGGPYVNNYSSNDTLTFFFIQQLPGAKGQIDDHQALIEARVKPELERIP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                        Q+    DP R  +L      ++       +   G +      R    
Sbjct: 171 GVSTVDIEGINERQIQIRFDPYRAAELGVEIPVLASRASTGWDVSAGTLD---IGRWEYK 227

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            ++     V   G  +                            +      I        
Sbjct: 228 LRFAGRYDVVTLGDKVVDW-------------------RDGLPIYLRDVAEIQLAREENP 268

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS--LPIKLNIVEERNVGADL 356
             R+        A    ++  +    +E   +    L                       
Sbjct: 269 VLRIQNGNTAIAAQIFKESGANALAALEAIKLKVGELNREMLEPVGLHMEQSFDASLYIN 328

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +  +      +   L   +L++ +   K  L+   +I ++++LT  LL +LG TL + S
Sbjct: 329 RAVGMVTANLGLGVLLSCAILWVFLRQLKATLMIAIAIPISIMLTFCLLKVLGRTLNVIS 388

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +AGI   +G+ +D+ I+V E I   + +   S   +   G SR ++ +  S +T +   +
Sbjct: 389 LAGIAFAVGMVLDAAIVVLESIYRRHERGDLSKAEAALEGTSRVWTALVASTLTTVAIFL 448

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN-PLSRF 531
            +       G      A+T+  ++ +SM  A++++ A+    +  +++            
Sbjct: 449 PVLLLNDVEGQLFADLALTIACAVTVSMLVAVTVLPAVAARWMGRERLIDPYEGLWQGTT 508

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL--ANRPV 589
             +         R     + +S+        L     L         + +      N   
Sbjct: 509 RRVIRWTGTSRQRWTVITLMMSLPALATWALLPKMDYLPDVKRDAVDVWMNFTPGFNLQA 568

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               V   L +     +  +     KN+ +           + +  + +K     ++   
Sbjct: 569 QREEVIDTLIARLAPYMKGEREPALKNYYILRYPGGAQIGVRPKEEDQIKVLEQLLMKQL 628

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            +   +         L         IS +     +   ++   A  AI 
Sbjct: 629 LVGIPDTQVFGGQGSLFGGFDSENGISLLLQGGDLAELYQAARAAMAIV 677



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 77/244 (31%), Gaps = 11/244 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R   E     + +        N  +  Q            LE +K K+ E+        
Sbjct: 254 LRDVAEIQLAREENPVLRIQNGNTAIAAQIFKESGANALAALEAIKLKVGELNREMLEPV 313

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYI------WIRFKWYFALGAITTLILDITKT 707
              +       L     VG++ + + + + +          +    L     + + I  T
Sbjct: 314 GLHMEQSFDASLYINRAVGMVTANLGLGVLLSCAILWVFLRQLKATLMIAIAIPISIMLT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   N+ ++A +   +G  ++  +VV + +    +     +S  +   +  + 
Sbjct: 374 FCLLKVLGRTLNVISLAGIAFAVGMVLDAAIVVLESI--YRRHERGDLSKAEAALEGTSR 431

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                V +++      LP+ +     G +    A+ +A  + V+   ++ +   +     
Sbjct: 432 VWTALVASTLTTVAIFLPVLLLNDVEGQLFADLALTIACAVTVSMLVAVTVLPAVAARWM 491

Query: 825 DWRA 828
               
Sbjct: 492 GRER 495



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 85/237 (35%), Gaps = 14/237 (5%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L  ++        F  +    + LQ  P   ++  +VL+ ++ K    +        E+
Sbjct: 773  ELLRVEHDMGPASIFRADGRRSISLQISPPAGMSMEQVLDTLQSKSFAAIRPLLPAGGEL 832

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL--GAITTLILDITKTLGFFAL- 713
                 +  L +       I   A++I + + +  + +L    +  L L +    G  AL 
Sbjct: 833  RVSGNADSLQQALGNLGAIFLFAVMILLILLWGVFASLKDAVLVLLTLPLATVGGVLALH 892

Query: 714  -----FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                   +  +L  +   + L+G  VN+ +++   + +        +S +  +  ++   
Sbjct: 893  LSGLLVPLPMDLLTIIGFVILLGLVVNNAILL---VHQTRTAEREGMSRQLAVADALQSR 949

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +     TS+ +   +LP+ +    G  +    A  +  G+  +   ++ +    L  
Sbjct: 950  MRPIAMTSLTSIFGMLPLMLSPSEGSEIYRGLATVIVGGMSCSTLFTLILLPAFLRL 1006


>gi|149925175|ref|ZP_01913474.1| acriflavin resistance protein [Plesiocystis pacifica SIR-1]
 gi|149813957|gb|EDM73603.1| acriflavin resistance protein [Plesiocystis pacifica SIR-1]
          Length = 1132

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 70/523 (13%), Positives = 159/523 (30%), Gaps = 33/523 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + ++   +   GL+        +  ++  P     +                    
Sbjct: 25  RPVTVTMVTVALLLFGLVAV-----TRMPVELLPDLSYPSIT---------VQTTFADAA 70

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +EL   +        + R+  +++ L FA     ++    V   L  V
Sbjct: 71  PAEIEELVTRPVEELVGGVPGVVAVESASREGSSEVVLDFAWGTRIDDAMADVREKLDRV 130

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-------HAIEQSMEIIRQRIDQIG 175
              L    ++ +++     +  I+                            +Q    + 
Sbjct: 131 R--LPTTAERPVVLRYDPSQEPIMRLALVPGAGEDAGPLLASDFRALRDVADKQVKQDLE 188

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +             ++  E DP RL       +++       N ++ G        R 
Sbjct: 189 KLDGVAAVQLHGGDEEEVVVELDPERLAAYGIDASEVVTAIGSDNVNRPGGGLTDNNNRY 248

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                +  +   ++  I +  +++     +             A R      +     L 
Sbjct: 249 LIRTVHEAKTAEDLGAIIIRQSSSTSSTSSGSGGGGELRLRDLATRIERTAVEREELSLV 308

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                       + +     +   +     ET       L     P    IV        
Sbjct: 309 GGA-----GTREVIELAVYREGDANTVRVAETVQARLTALERSLPPGHELIVLSNQARFI 363

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         +  GL ++VL   +   +  LV   +I ++++++   L++LG +L L 
Sbjct: 364 DAAIVEVALNTLVGGGLAILVLLFFLRDLRSTLVIGVAIPISLLVSFVPLTILGVSLNLM 423

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC---SLDMGFSRAYSTIFDSNITALI 472
           S+ G+ LG+G+ VD++I+  E I  E   + ++     ++      A S +  +  T  +
Sbjct: 424 SLGGLALGVGMLVDNSIVTLEAIAREREGDPAMPRAQAAIRGTVEIASSVVASTLTTVAV 483

Query: 473 ATVVLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIF 513
              + F  G     VR  A  +  SIL SM  ++++V  +   
Sbjct: 484 FFPMAFVEGVAGQLVRDLAYAVSFSILSSMLVSLTLVPVLQAL 526



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/208 (11%), Positives = 70/208 (33%), Gaps = 6/208 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V  +           V   +      + P   +         I   ++   +  ++ 
Sbjct: 318 ELAVYREGDANTVRVAETVQARLTALERSLPPGHELIVLSNQARFIDAAIVEVALNTLVG 377

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +A+L+ ++        L     + + +  +     + G+  NL ++  +   +G  V+
Sbjct: 378 GGLAILVLLFFLRDLRSTLVIGVAIPISLLVSFVPLTILGVSLNLMSLGGLALGVGMLVD 437

Query: 736 DKVVVYDRM-RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGG 791
           + +V  + + R+  +    ++       +   E     V +++       PMA      G
Sbjct: 438 NSIVTLEAIARE--REGDPAMPRAQAAIRGTVEIASSVVASTLTTVAVFFPMAFVEGVAG 495

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++   A  ++F I+ +   S+ +   +
Sbjct: 496 QLVRDLAYAVSFSILSSMLVSLTLVPVL 523



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 87/289 (30%), Gaps = 9/289 (3%)

Query: 544  RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
            R R   V  S +  +  I +                 + + A   V+ +V  + +  +  
Sbjct: 845  RVRLPEVDRSSVEDVARIQVGLVTPPTTTGTSAPPRPVQLTAVAAVEPTVGPAEIRRIDG 904

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                          L  L      +V       + +                    ++  
Sbjct: 905  RRGLRIRARAGVGDLGALA-SEVQAVLDEEADALARSGSGVGRSDWIQAEVAGQANEMGD 963

Query: 664  ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             L       ++ S   + + +   F+  +     + T+ L I   +    L G   +   
Sbjct: 964  SLQSLAFTALL-SIFLVYVVMASSFESLHHPFLIMFTVPLAIIGVVLACQLTGTPISAMV 1022

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
                + L G  VN+ +V+   +    +     +   + + ++ +        T+    + 
Sbjct: 1023 GIGAIILGGIVVNNAIVL---INAVNQRRGRGMGVDEALIEAGSVRARPIAMTTATTVLG 1079

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            ++PMA+    G ++    A+ +  G++ A + ++ +       +   R 
Sbjct: 1080 LMPMAIGMGEGAALRQPLALAVIGGLLAATALTLVVIPCAYALVPGKRR 1128


>gi|284037700|ref|YP_003387630.1| acriflavin resistance protein [Spirosoma linguale DSM 74]
 gi|283816993|gb|ADB38831.1| acriflavin resistance protein [Spirosoma linguale DSM 74]
          Length = 1053

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/683 (9%), Positives = 191/683 (27%), Gaps = 52/683 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++L++++   GL             +  P                    +    
Sbjct: 9   KRPSLIIVLFAILTIGGLFS-----YRLLSYELLPEFSTPVIT---------ITTIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S L        +  +  + + + F      +         +  
Sbjct: 55  APSEVETEISKKIEDAVSGLDNLDDVKSNSFENASVLVVQFKAGTDIDLALQDAQREIDK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D ++  L   +  +  I+              +Q   +  + +  +   +   
Sbjct: 115 MVSDLPDDAEQPSLSKISPSDQPIMQLLATSTLPNEVFYQQ---VEDKYLPVLQQIKGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    D  +L     +  ++S                      +  N  
Sbjct: 172 DIAMVGGDKREIRINVDDDKLNYYGLSLLQVSQAI-------------------NQANLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               KV+ +  ++    A            +                N+   L       
Sbjct: 213 FPTGKVKSTSENMTLRLAGKFSSLDDIRKLVIATPANGSPIRISDVANVTDGLTEATSIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI-VEERNVGADLGSDS 360
                         ++  +            A +   +   K++  +   +    L S  
Sbjct: 273 RFNGQDGIGLFIKKQSDANAVEISRIVQEKLAQIEKENTKDKVHFAIAYDSSVFTLASVE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +  GLV IV+ + +   +   +   S+  ++I     + ++G +L L ++  +
Sbjct: 333 AVTHDLLLAVGLVAIVMLLFLHSFRNAFIVMISVPASLISAFLFMFVMGYSLNLMTLLAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IG+ VD +I+V E I+      +  + +   G S          +  ++  V + F 
Sbjct: 393 SLVIGILVDDSIVVLENIQRHLEMGKDRWRATLDGVSEIGFAAVAITLVIVVVFVPITFV 452

Query: 481 GGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
                   R F++T+  + ++S+  + ++   +   + R + +   +       +     
Sbjct: 453 NSVIADLLRQFSLTVAFATMVSLVVSFTLTPWLTSKMARLEHLNPKNPFQAFLLWFEKGL 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID------------FKGGIQLGVLA 585
            A+  +  R  G  ++   +   I +       + ++             +G   L +  
Sbjct: 513 TALTSVYHRSLGWVLTHKLAFTGILVAIFVFTGWVMNLGIIGSEFVAQGDQGKFLLTMKL 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           ++   L        +++         +     +         +         +  ++ + 
Sbjct: 573 DKSASLQQNNLMARNIENYLRKKPEVETIFANVGGASTGMNSTGQGETNRTELTVQLADA 632

Query: 646 VPLSTIQNTEIVGPKISRELIRK 668
                 + TE     + +EL ++
Sbjct: 633 SERPGHKLTEQYMIDVRQELEKQ 655



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 30/265 (11%), Positives = 83/265 (31%), Gaps = 11/265 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               +L +          +            +           + L  +         + 
Sbjct: 237 DDIRKLVIATPANGSPIRISDVANVTDGLTEATSISRFNGQDGIGLFIKKQSDANAVEIS 296

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV----IISAIAMLIYIWIRF-KW 690
            +V++K+ +I   +T           S       +  V    +++   + I + +    +
Sbjct: 297 RIVQEKLAQIEKENTKDKVHFAIAYDSSVFTLASVEAVTHDLLLAVGLVAIVMLLFLHSF 356

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             A   + ++   +     F  + G   NL  + A+  +IG  V+D +VV + +    + 
Sbjct: 357 RNAFIVMISVPASLISAFLFMFVMGYSLNLMTLLALSLVIGILVDDSIVVLENI---QRH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVV 807
                         ++E    +V  ++   +  +P+         ++  F++ +AF  +V
Sbjct: 414 LEMGKDRWRATLDGVSEIGFAAVAITLVIVVVFVPITFVNSVIADLLRQFSLTVAFATMV 473

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +   S  +   +   +      N +
Sbjct: 474 SLVVSFTLTPWLTSKMARLEHLNPK 498



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 83/251 (33%), Gaps = 7/251 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +    P     VR    +           + +                   +  +++  +
Sbjct: 781  INFFSPSTNRPVRLAEFANVTLSNGPSLLERKNRRSSVTVTANTLGTGSGTLTSVIQADL 840

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLI 701
             +    + +  +     K   E      + ++   + +  I + +   + +    + ++ 
Sbjct: 841  AKNPLPAGVTVSWGGDAKNQSEGFGSLGIAMLAGLMLVYFIMVLLYDSFVYPFVVLFSVP 900

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + +   L   AL      + A+  +L LIG  V + +++ D      +     + FR  I
Sbjct: 901  VAVIGALLALALTSSNIGIFAMLGMLMLIGLVVKNAILIVDFAN---QQKEQGVPFRQAI 957

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +  E L   + T++A  I ++P+A     G     S A  +  G+  +   +I++   
Sbjct: 958  LHAGEERLRPILMTTIAMVIGMIPIATASGAGAEWKNSLAWVLIGGLSSSMLLTIYLVPM 1017

Query: 819  ILLFIYDWRAK 829
            +   +     K
Sbjct: 1018 MYYVVDRIGEK 1028


>gi|218892692|ref|YP_002441561.1| putative Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa LESB58]
 gi|218772920|emb|CAW28732.1| probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa LESB58]
          Length = 1036

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/492 (13%), Positives = 144/492 (29%), Gaps = 24/492 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            + +L     + +   +    +   S +        S       +TL F+  +  +  A 
Sbjct: 51  INALLPGGSPETMASSVATPLEVQFSAIPGITEMTSSSALGTTTLTLQFSLDKSIDVAAQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L VD              S ++    ++  +   IE S         Q
Sbjct: 111 EVQAAINAAAGRLPVDMPNLPTWRKVNPADSPIMI-LRVNSEMMPLIELSDYAEIILARQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       Q     +    +  +  P +L     T A +                     
Sbjct: 170 LSQVNGVGQIFVVGQQRPAIRIQAQPEKLAAYQLTLADLRQSLQS--------------- 214

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +          ++   AN          D+          F      I   
Sbjct: 215 -----ASVNLAKGALYGEGRVSTLAANDQLFNASDYDDLVVAYRQGAPVFLKDVARIVSA 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             +   +   +   T +        LR          V      
Sbjct: 270 PEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAALPRLREMLPATIEVDVLNDRTR 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +  GLV++V+ + +      L+    + +++  + A + +LG TL 
Sbjct: 330 TIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVATVLAVSLSASFAAMYVLGFTLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  +++ +G  VD  I+V E I        S   +   G +    T+   + + + A
Sbjct: 390 NLTLVALIIAVGFIVDDAIVVVENIHRHLEAGASKVEAALKGAAEIGFTVISISFSLIAA 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   R FA+++ ++ILIS+  ++++   +    +   +         + 
Sbjct: 450 FIPLLFMGGIVGRLFREFAVSVTVAILISVLASLTLAPMLASRFMPALRHADAPRKGFAE 509

Query: 531 FFLIPDCIAIQF 542
           +        +++
Sbjct: 510 WLTGGYERGLRW 521



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 95/244 (38%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      PV L  V   + + +   +           LV L+    + V     ++   
Sbjct: 249 VVAYRQGAPVFLKDVARIVSAPEDDYVQAWPNGVPGVALVILRQPGANIVDTADAIQAAL 308

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++ E++P +   +      +  R  + +  + ++++   +++ + +  +   A   + T
Sbjct: 309 PRLREMLPATIEVDVLNDRTRTIRSSLHEVELTLLLTIGLVVLVMGLFLRQLSATLIVAT 368

Query: 700 -LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L + ++ +     + G   N   + A++  +G+ V+D +VV + +    +      S  
Sbjct: 369 VLAVSLSASFAAMYVLGFTLNNLTLVALIIAVGFIVDDAIVVVENIH---RHLEAGASKV 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S +   + +P+   GG V      FA+ +   I+++  +S+ +
Sbjct: 426 EAALKGAAEIGFTVISISFSLIAAFIPLLFMGGIVGRLFREFAVSVTVAILISVLASLTL 485

Query: 816 AAPI 819
           A  +
Sbjct: 486 APML 489



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 89/235 (37%), Gaps = 6/235 (2%)

Query: 601  LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                    Q         V L +     V+    ++ V++   EI   STI        +
Sbjct: 790  AAPRSGPLQINHNGMFPAVNLSFNLAAGVSLGEAVQAVQRAQEEIGMPSTIIGVFQGAAQ 849

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
              +  +    + ++ + IA+ I + + ++ +   L  ++TL       +     +G +F+
Sbjct: 850  AFQSSLASQPLLILAALIAVYIILGVLYESFVHPLTILSTLPSAGIGAVFLLWAWGQDFS 909

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
            + A+  ++ LIG    + +++ D     +      +S    I ++        + T++AA
Sbjct: 910  IMALIGIVLLIGIVKKNGILMVD--FAIVAQREQGMSAEQAIYQACLTRFRPIMMTTLAA 967

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  +P+ +    G  +     I +  G++V+   ++F    + L +     +  
Sbjct: 968  LLGAIPLMIGFGTGSELRQPLGIAVVGGLLVSQVLTLFSTPVVYLALERLFHRRG 1022


>gi|332286664|ref|YP_004418575.1| AcrB/AcrD/AcrF family protein [Pusillimonas sp. T7-7]
 gi|330430617|gb|AEC21951.1| AcrB/AcrD/AcrF family protein [Pusillimonas sp. T7-7]
          Length = 1036

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/515 (10%), Positives = 142/515 (27%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G L  +   +       FP                     +    
Sbjct: 10  RPVATTLLCLAMVLSGGLAFVFLPVSPLPQVDFPMIS--------------VSASMAGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    ++    +           +   +I+L F   R   + A  V   +   
Sbjct: 56  PETMASSVATPLEQSLGSIAGLSEMSSRSSEGSTRISLMFDLDRDINSAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    + N          + ++    +    +   +           ++       +
Sbjct: 116 RSMLPSSLRSNPTYNKVNPSSAPIMV-LALTSQTATQGQLYDLASTVLAQKLSQVTGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L         +       N  +                   
Sbjct: 175 VEVGGSSLPAIRVSLNPLALNSAGVALDDVRAALSSANTMRPNG---------------- 218

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               V  +  +    ++       +    +                 +   +  V +   
Sbjct: 219 ----VVENDRYHWQISSGGQLSRAEQYKPLIVAWRDGSPIRLQDVAQVEDSVENVFNTGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +A  +   T++          A         V +    +   S    
Sbjct: 275 FNDRQAILLVVRRQADANIIETVDAIREQMPAFEAMMPAHVALTVAQDRTPSIRASLHEA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV +V+ + +   +  L+   ++  ++I T +L+   G +L   S+  +++
Sbjct: 335 EITLLIAVVLVTLVVLLFLGNWRAALIPAIAVPASLITTFSLMLWFGYSLNTISLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  S   +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIMRHIERGASPLRAAIRGAREVGFTVLAMSLSLVAVFIPMLLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   + FA+T+ ++IL+S+  ++++   M   +
Sbjct: 455 LIGRLFKEFAVTLSVAILVSLLISLTLTPMMCARL 489



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 52/131 (39%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL     +   +  T      FG   N  ++ A++   G+ V+D +VV + +   M+
Sbjct: 356 WRAALIPAIAVPASLITTFSLMLWFGYSLNTISLMALIVATGFVVDDAIVVLENI---MR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                 S      +   E     +  S++     +PM + GG +      FA+ ++  I+
Sbjct: 413 HIERGASPLRAAIRGAREVGFTVLAMSLSLVAVFIPMLLMGGLIGRLFKEFAVTLSVAIL 472

Query: 807 VAASSSIFIAA 817
           V+   S+ +  
Sbjct: 473 VSLLISLTLTP 483



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 96/274 (35%), Gaps = 9/274 (3%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               + +          +    +Q+       V LS             +  Q     ++ 
Sbjct: 751  QYHVVMGVQDQYAQDAESLKLVQVVTDEGNRVPLSAFTRFEVGSAPLSVRHQGLLAAESI 810

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
               L        A   +   V +     +P   IQ       +  +E + +    ++ + 
Sbjct: 811  SFSLAPGVSLEQATQSIENAVARI---SLPTQEIQAGFEGTAQALQESMAQQPWLILAAL 867

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + M I + + ++ +   +  ++TL       L    + G EF+L A+  V  LIG    +
Sbjct: 868  VTMYIVLGMLYESYVHPITILSTLPSAGIGALLALMMLGEEFSLIALIGVFLLIGIVKKN 927

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ D            +S R+ I ++        + T+++A    LP+ +    G  +
Sbjct: 928  AIMMVD--YALQAERRDGLSSREAIYQACLVRFRPIMMTTISALFGALPLVLASGAGVEM 985

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                 + +  G++++   +++    + L++  +R
Sbjct: 986  RRPLGLTIVGGLILSQMLTLYTTPVVYLYLDRFR 1019


>gi|262165817|ref|ZP_06033554.1| AcrB/AcrD/AcrF family protein [Vibrio mimicus VM223]
 gi|262025533|gb|EEY44201.1| AcrB/AcrD/AcrF family protein [Vibrio mimicus VM223]
          Length = 1024

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 80/634 (12%), Positives = 190/634 (29%), Gaps = 45/634 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++    ++    +   G             +  FP             L G     +E  
Sbjct: 9   KHPVIAMVFSIAVVLFGAWS-----FQSLEIKYFPEHER---------LTGSVSTTIEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKE--NIADKVTLF 118
             +F++  +     +  + + +         Q    + + F D     E  N+ +K+   
Sbjct: 55  SAEFMDKNVAEKLTDAAAIVGRVKTMSTKCVQGSCSLNIVFEDNVTDVEYINLMNKLRNR 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++ +        +K  +   +          + +    +   E    I +Q I Q    +
Sbjct: 115 VEAIQDFPPSMEEKPKISDNSSDASFASNIISFVSTGDTTQQELFDYIRQQLIPQFRRLD 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P R++ L    + +     + + +             S 
Sbjct: 175 GVGAIWGPYGGSAGAVRVWLLPDRMKALQVNPSDVVDAIEMYSTNFTAGKIIGEERSYSI 234

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  V D  +++ + +                     E G+    +   + +    +V 
Sbjct: 235 NVKNTVSDVNDVANLVIRS-------------------EEGSTVRLKDVAEVVMGTNSVD 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +     +        L++         V          
Sbjct: 276 PSILTVNDNPAMAIQIKPLRSANPVSVAKLVRQKVEQLQSALPAGVQMTVVYDQADFIQS 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S             LV +++ + +   +   +   +I + VI   +++SLLG ++ + ++
Sbjct: 336 SIQEGFNALFEAIVLVSLIMVLFLGSLRLASIPIITIPICVIGVFSVMSLLGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E       + +S   +   G       +    +T  +    +
Sbjct: 396 LSIILAIGLVVDDAIVVAENCYRRVEQGESPLDAALKGSKEIAFPVIAMTMTLAVVYTPI 455

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLS 529
            F         R FA T+  ++LIS F A+++   M  ++I+      K    ++     
Sbjct: 456 GFMSGLTVDLFRQFAFTLAAAVLISGFVALTLSPMMCAYVIKPITAPSKWFSWLESKQQR 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L    +   F R  +   G+S L  +  +   ++  L    +  G I+  V A    
Sbjct: 516 LAELYLAELNKWFARKWWVVGGVSALLVLAGLIFWYSPNLLLPTEDTGFIEARVQAPTGA 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +      N+  L     + ++     +++ +  Y
Sbjct: 576 NRQYNLDNVGGLNRIINNEESIAQNLSYIEQTPY 609



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 88/261 (33%), Gaps = 8/261 (3%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +        ++    + +       V L  V   +      D S    +      +++
Sbjct: 232 YSINVKNTVSDVNDVANLVIRSEEGSTVRLKDVAEVVMGTNSVDPSILTVNDNPAMAIQI 291

Query: 622 -QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
              +  + V+  +++    +++   +P               +  I++G   +  + + +
Sbjct: 292 KPLRSANPVSVAKLVRQKVEQLQSALPAGVQMTVVYDQADFIQSSIQEGFNALFEAIVLV 351

Query: 681 -LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            LI +        A   I T+ + +       +L G   N+  + +++  IG  V+D +V
Sbjct: 352 SLIMVLFLGSLRLASIPIITIPICVIGVFSVMSLLGFSINVLTMLSIILAIGLVVDDAIV 411

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GS 796
           V +      +      S  D   K   E     +  +M   +   P+    G  +     
Sbjct: 412 VAENC---YRRVEQGESPLDAALKGSKEIAFPVIAMTMTLAVVYTPIGFMSGLTVDLFRQ 468

Query: 797 FAIPMAFGIVVAASSSIFIAA 817
           FA  +A  ++++   ++ ++ 
Sbjct: 469 FAFTLAAAVLISGFVALTLSP 489



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 63/158 (39%), Gaps = 7/158 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +F+ +   L  + T+ L I   L    +FG   N+ +   +LTL+G 
Sbjct: 858  VMAIVFIYLILAAQFESFRDPLLILLTVPLCIVGALIALWVFGQSINIYSKIGLLTLVGL 917

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++ +      +     +   + +  S        + T+M   +  LP+A+    
Sbjct: 918  VTKHGILLVEFAN---QRQKEGMPLTEAMLSSARARFRPIMMTTMTMMLGALPLALASGP 974

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G     +  + +  G++     S+F+     + +   R
Sbjct: 975  GSVGRVNIGLVLTGGLLSGTLFSLFVIPVAYVAMKSKR 1012


>gi|134094275|ref|YP_001099350.1| multidrug ABC transporter membrane protein [Herminiimonas
           arsenicoxydans]
 gi|133738178|emb|CAL61223.1| Multidrug resistance protein MdtC (Multidrug transporter MdtC)
           [Herminiimonas arsenicoxydans]
          Length = 1034

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/684 (10%), Positives = 185/684 (27%), Gaps = 41/684 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   +  +G          +  +   PS      I++   L G         
Sbjct: 9   RRPVMTVLLSIAVVVVGFF-----CYFKLPIAALPSYDTP-VINVTASLPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +        S       I L F  +R  +  A  V   L  
Sbjct: 55  SPEVMASSVATPLEKQFSTIAGVATISSSSTLGNTSIVLEFDQNRDIDAAAVDVQAALLR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +              + +L    +        E +          +   +   
Sbjct: 115 AQRSLPEEMNDLPAYRKVNPADAAILLLA-LTSPSLSLSELNDYAENLISPSLSTIDGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  +  PS L     T  +++      N +          + D      
Sbjct: 174 QVQVYGQRRYAVRIKVKPSELAARNMTLDEIAASIRAANANSPVG------VLDGPRQTL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   ++                 +   ++       +         +   +     G 
Sbjct: 228 TLQANRQLQNA--------------EAFGNLVISSSKGQTTRLKDVATVEDSVESTKSGS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +   +    ++       + ++         V      +   +   
Sbjct: 274 WVNGKPSIVLAVQRQPNANTVAVVDAVKHTLPLFQSQMPASIDLQVLNDRSVSIREAIHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV++V+F+ +       +   S+ +++I   AL+  +G +L   S+ GI 
Sbjct: 334 VKLTLLLTILLVVLVIFLFLKRLTATAIPVLSLPISLIGCCALMYWMGFSLDNVSLLGIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +GL VD  I++ E I            +   G      TI   +I+ +   + +FF  
Sbjct: 394 IAVGLVVDDAIVMLENIVRHIEDGMEPLAAALKGSREVSFTIISISISLVAVFIPIFFMP 453

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G           +  L  + +A+ +   ++  +           +         + +   
Sbjct: 454 GVIGLLLHEFAAVVSLAVLVSAV-MSLTLVPMLCSRFLKHEKAGHENDAVQPQENWLIRS 512

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
           F +     +         S+    T  +     F     L +   +    +     +   
Sbjct: 513 FEKVFNRLLASYTRALDWSLAHRTTMLVLAAGTFVLTAYLFITIPKGFFPTEDIGQIS-- 570

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                     D     +V+L    G  +     +E    +  +    +     +    + 
Sbjct: 571 ---VTIEGPQDASYPTMVKLVTAVGTIIQNDPNVETATMRTRDSNVGNMFVGLKPRTARE 627

Query: 662 SRELIRKGIVGVIISAIAMLIYIW 685
             + + +G+   + +   + +Y+ 
Sbjct: 628 PMDAVLRGLRAKVKAVPGVTVYLT 651



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 64/160 (40%), Gaps = 8/160 (5%)

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++    ++IYI +      +   +  +  L       L    +FG E  + A+  +L LI
Sbjct: 861  LVVLALVVIYILLGVLYESYIHPVTILAGLPSAAVGALLTLRIFGFELTMIAMIGILLLI 920

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ D            ++  + I  +        + T++AA +  LP+A+  
Sbjct: 921  GLVKKNAIMMID--FALAAQREQGLTPLEAIRTACILRFRPIMMTTLAAAVGALPIALGL 978

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              G  +     + +  G++V+   ++ I   I LF+  + 
Sbjct: 979  GAGAELRQPLGLAVVGGLMVSQVITLLITPVIYLFLDRFS 1018



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/151 (11%), Positives = 53/151 (35%), Gaps = 10/151 (6%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
               +       + +L + +          G   +  ++  +   +G  V+D +V+ + +
Sbjct: 351 LFLKRLTATAIPVLSLPISLIGCCALMYWMGFSLDNVSLLGITIAVGLVVDDAIVMLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
              ++     +       K   E     +  S++     +P+    G +   +  FA  +
Sbjct: 411 ---VRHIEDGMEPLAAALKGSREVSFTIISISISLVAVFIPIFFMPGVIGLLLHEFAAVV 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  ++V+A  S+     ++  +     K+ +
Sbjct: 468 SLAVLVSAVMSL----TLVPMLCSRFLKHEK 494


>gi|152978212|ref|YP_001343841.1| acriflavin resistance protein [Actinobacillus succinogenes 130Z]
 gi|150839935|gb|ABR73906.1| acriflavin resistance protein [Actinobacillus succinogenes 130Z]
          Length = 1029

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 81/669 (12%), Positives = 197/669 (29%), Gaps = 50/669 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  +GL       + +  +  +P                         
Sbjct: 9   KRPVMAICISLLIVILGL-----QAISKLSVREYPKMTTTVIT---------VSTTYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +  F+    +E  +          S     + IT+    +    +    V   +Q 
Sbjct: 55  DAGLIQAFVTSKLEEAIAQADNIDYLSSSSAPSSSTITVKMKLNTDPASALADVLSKVQS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    +   L ++T     I+      D++    +  +  I R    Q+   E   
Sbjct: 115 VRSELPSGIEDPTLTSSTGGS-GIMYISFRSDKLHPSQV--TDYIERVVKPQLFTVEGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     + ++++      N           F    +  + 
Sbjct: 172 KVNVYGAAEYAMRIWLDPQKLAAQNLSASQIATALANNNVQTAAGNDKGYFNVYRNKVET 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 ++                     ++     G +        ++           
Sbjct: 232 TTNTVEDLG--------------------NLIVYSDGEKLVRLRDVADVELNKESDNTRA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +     +    L   ++        + +      A   S + 
Sbjct: 272 AANGSDAVVLGIEPTSNANPLDVADKIRPLYDTIKKNLPNSIESDILYDRTVAINSSIND 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL+V+ M +   +  L+   +I +++I  + LL  L  +L L ++  ++
Sbjct: 332 VIHTIVEAVVIVLVVIMMFIGSLRAILIPIITIPISLIGVVFLLQALDFSLNLMTLLAMI 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ ++ F +  +G       +    I  +     +   G
Sbjct: 392 LAIGLVVDDAIVVLENVDRHIKEGETPFRAAIIGTREIAVPVISMTIALVAVYSPMALMG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDINPLSRFFLIP 535
              G   + FA+T+  ++ IS   A+++   M   +++++  K    ++        +  
Sbjct: 452 GITGTLFKEFALTLAGAVFISGIIALTLSPMMSGKMLKHESSKFEEKVNRTLTKITNIYT 511

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             + +     +   +   I+F+   +            + KGG    V A   V++  V+
Sbjct: 512 YILGLVMQTRKAILLFAVIIFATLPVLFTALSSELTPTEDKGGFLGMVTAPSNVNVDYVQ 571

Query: 596 SN-------LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                    L++      S             +     D   ++R    V  ++T     
Sbjct: 572 QATKPYEEILDNTPEKQYSQVIAGAPNTNQALVITTLKDWSERSRTQAEVMAELTAKAAE 631

Query: 649 STIQNTEIV 657
               +    
Sbjct: 632 IPEVSISAF 640



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 75/220 (34%), Gaps = 16/220 (7%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                +++   P  +            K          +       +    L    I+ V+
Sbjct: 794  NAAEIQMVPSPTTTTGDAIAWLQEAAKDLPQGYSYDWKGEARQLVQEGNALATTFILAVL 853

Query: 675  ISAIAMLIYIWIRFK-------WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            I    + + + I+F+          ++    +  L +   L FF + G+  N+ +   ++
Sbjct: 854  I----IFLVLAIQFESIRDPMVILVSVPLAISGALLVLNLLSFFGVTGVTLNIYSEVGLI 909

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM- 786
            TL+G      +++ +  ++         +  + I  +    L   + T+ A    ++P+ 
Sbjct: 910  TLVGLITKHGILMCEVAKEE--QLNHGKNKMEAIMTAAQLRLRPILMTTAAMIAGLVPLL 967

Query: 787  AVWGGSVIGSF--AIPMAFGIVVAASSSIFIAAPILLFIY 824
               G   +  F   + +  G+ +    ++F+   I  ++ 
Sbjct: 968  YASGAGAVMRFSMGVVVVAGLAIGTLFTLFVLPVIYTYLG 1007



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +          NL  + A++  IG  V+D +VV + +    +      +          
Sbjct: 371 VVFLLQALDFSLNLMTLLAMILAIGLVVDDAIVVLENV---DRHIKEGETPFRAAIIGTR 427

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
           E     +  ++A      PMA+ G   G++   FA+ +A  + ++   ++ ++ 
Sbjct: 428 EIAVPVISMTIALVAVYSPMALMGGITGTLFKEFALTLAGAVFISGIIALTLSP 481


>gi|317009378|gb|ADU79958.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori India7]
          Length = 1026

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGVMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVMNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTSYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIISIAVVLVFVGSLFVASKLGMEFM 540



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/378 (11%), Positives = 113/378 (29%), Gaps = 20/378 (5%)

Query: 472  IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
            ++ V L   GG +          S      +  ++ + ++       K++    +     
Sbjct: 643  LSEVSLLGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKIEGFHTSTSESQ 702

Query: 532  FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
              +   I  Q                  +        +      +  + + V  N+ V +
Sbjct: 703  PQLQLKILRQNANKYGVSAQTIGSVVSSAFSGTSQASVFKEDGKEYDMIIRVPDNKRVSV 762

Query: 592  SVVRS-----------NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              ++             L++L     +       +    R         A   + E++ +
Sbjct: 763  EDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPKAGISLGEILTQ 822

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAI 697
                               +        G   + ++   +LIY+    +          +
Sbjct: 823  VSKNTKEWLVEGANYRFTGEADNAKETNGEFLIALATAFVLIYMILAALYESILEPFIIM 882

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             T+ L  +       L     ++ ++  ++ LIG    +  ++ D   +  K     ++ 
Sbjct: 883  VTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANEERK---KGLNI 939

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++ I  +    L   + T++A    +LP+A+    G ++     I M+ G++++   S+ 
Sbjct: 940  QEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGLMISMVLSLL 999

Query: 815  IAAPILLFIYDWRAKNAR 832
            I       +     K  R
Sbjct: 1000 IVPVFYRLLAPIDDKIKR 1017



 Score = 39.7 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPSYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|313675177|ref|YP_004053173.1| acriflavin resistance protein [Marivirga tractuosa DSM 4126]
 gi|312941875|gb|ADR21065.1| acriflavin resistance protein [Marivirga tractuosa DSM 4126]
          Length = 1056

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 94/718 (13%), Positives = 223/718 (31%), Gaps = 36/718 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  ++  + +++       +  ++ FP         L ++L+ G      +     +   
Sbjct: 13  ISILMLVLAVILLGTISFGKLPIELFPDLKNPT---LFVELKAG------IKPPSEIEKQ 63

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
                + +              +    ++T+ +   +  +     +   L      L+ +
Sbjct: 64  FVESIESVAIRQNGAVEVSSISQTGYGRVTVQYDWGKDMDEAFLDLQKSLSSF--SLDEE 121

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            ++ ++         I++         +              ++I       +   S   
Sbjct: 122 IEEFVISQFDPNATPIMILGIYNPN-SNDTEALRKVAENNFRNEIIRLPGIAEVRLSGEQ 180

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             ++  E DP+ L     T   +       N +  G        +       ++ED  ++
Sbjct: 181 EKEVVLETDPNLLASYGLTVNDLVAKIENYNRNVSGGFIEELGRKYVIKGLGIIEDSEDL 240

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             + +                  +            T   +   L  V   +++     +
Sbjct: 241 EELVVGYTNRQSTSSNPNSTNVNAEMAQSTSNPQTSTTAQVPVLLREVATLKIMDKEANS 300

Query: 310 QAIPSGK-------AQISGNFTIETAGILAAML--RAGSLPIKLNIVEERNVGADLGSDS 360
               + +        + +   T+     L  +L     S+P    ++ +       G+  
Sbjct: 301 IVRVNQQRSLGLSIFKETKYNTVNAVNELTEVLDGLKKSVPGYEFVIIQNQGRFIQGAID 360

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +    A   +I+LF+ +      L+   +I +++I T  L+   G TL + ++ G+
Sbjct: 361 EVKESGLYGALFAVIILFVFLRRIGSTLIISIAIPVSIIATFNLMYFNGLTLNVMTLGGL 420

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            LG G+ VD+ I+V E I     +  SV  +   G S     I  S +T ++  + + + 
Sbjct: 421 ALGAGMLVDNAIVVVEAIFRRREEGMSVIDAAVKGTSDVSGAITASTLTTIVVFLPIVYL 480

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLSRFFL 533
            G +    +  A T+  S++ S+  AI ++  +   I R    K     +       F  
Sbjct: 481 QGPSGELFKDQAWTVAFSLISSLAVAILVIPMLFSQIFRKDNRKQMEKPLKYKAYRNFLN 540

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLF----THGLNYGIDFKGGIQLGVLANRPV 589
                 I F+   F  V  S                T  +   +    G  L   ++   
Sbjct: 541 KVLHYRIAFIVLSFLLVLGSYQLIGIIGSEYMPQAGTKAIAVDLKLANGTPLTRTSSTVD 600

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL--EMVKKKITEIVP 647
            +    S L   Q+  +       +    +  +    ++ A  +++  E V+  I E+  
Sbjct: 601 QIEGQLSILFEEQLDHVYSHIGPEKSQSGIDNENVYDENKASLKLIFKEDVELDINEVTS 660

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWYFALGAITTLILD 703
             +     I G   S       +  ++       ++      F+   AL     +IL+
Sbjct: 661 ALSTYFEGIPGLTASFSNDESALNAILGEEQMPLVVEVSGAEFEALSALSDSVMVILN 718



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + T+ L     L  F + G+  N+ A   ++ L G +VN+ +++ D +    
Sbjct: 902  SLLHPFTILLTIPLACVGALVSFWILGMSLNMMAFIGIIMLAGIAVNNSIILVDSIN--- 958

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG-GSVIG-SFAIPMAFGI 805
            +   + +  RD I  +        + TS+   +++LP+   +G  + +    A+ +  G+
Sbjct: 959  RNKRSGMDLRDSILDAAQRRFRPIIMTSLTTILALLPLTFGFGESAALRAPMAVAVIGGL 1018

Query: 806  VVAASSSIFIAA 817
            V +   ++ +  
Sbjct: 1019 VSSTLLTLIVIP 1030


>gi|222055654|ref|YP_002538016.1| heavy metal efflux pump, CzcA family [Geobacter sp. FRC-32]
 gi|221564943|gb|ACM20915.1| heavy metal efflux pump, CzcA family [Geobacter sp. FRC-32]
          Length = 1045

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 77/597 (12%), Positives = 166/597 (27%), Gaps = 42/597 (7%)

Query: 11  YSMICCIGLLIALPNF-LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
             ++   GL+IA   + + ++ +D  P       I                     V   
Sbjct: 14  VIILMIFGLIIAWGVWSVYKTPVDAIPDLSDNQVI---------VFTEYPGRSPQVVEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          L +      S     + I + F D         +V   L    S L   
Sbjct: 65  VTYPLAVNLQGLPQVRAVRASSAFGFSMIYVIFEDKADIYWARTRVLERLNYAASLLPPG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               L    T        +            +           Q+   +   +      +
Sbjct: 125 VVPTLGPDGTGVGHVFWYTIEGKG---YDLAQLRTLQDWFVRYQLNTVQGVAEVASIGGL 181

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + +   + DP++L        K+       N    G +            +  V+ K ++
Sbjct: 182 VREYQIDLDPNKLFAYGLPVGKVMEAVKASNKDVGGKLIEQADAEYLIRGRGYVQSKADL 241

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                       G   + +                 +       
Sbjct: 242 ENIVVGADM------------------RGTPIYVKNLGTVQMGGAIRRGMLDMNGQGEAV 283

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   +   +    I+   +    L  G  P    +V          +    K +    
Sbjct: 284 GGIVVMRYGENAKDVIDRVKVKIKELEKGLPPGVKIMVSYDRSDLIARAIDTLKHSLLEE 343

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           + +V +V+ + +L+ +  LV   ++ + V+++   + L+G T  + S+ GI + IG+ VD
Sbjct: 344 SIVVSLVILIFLLHFQSALVIVLTLPIAVLISFITMKLMGVTSNIMSLGGIAIAIGVLVD 403

Query: 430 SNILVNERIREENRKNQSVFCSLDM------GFSRAYSTIFDSNITALIATVVLFF---F 480
           + +++ E       +      +            +    IF S    +++ V +F     
Sbjct: 404 AGVIMVENCYRHLSEMPPEERAAKRLEVIITSAKQVGRAIFFSLAIIILSFVPVFLLEGQ 463

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC--I 538
            G      A T   S++ S F AI++V  +M F +R K          + F  +      
Sbjct: 464 EGKMFHPLAFTKTFSMMGSAFIAITLVPVLMYFFMRGKMPPESSNPVSTFFIRLYSPVIR 523

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
            +   +     + +  L     + +         +D    + + V           R
Sbjct: 524 WVLVWKKTTIALNVVALLIAIPMFMNLGSEFMPPLDEGSLLYMPVTLPNVSITEAKR 580



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 83/241 (34%), Gaps = 7/241 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +       +   N  GE    + +     ++      +++  K++ + +P         
Sbjct: 264 QMGGAIRRGMLDMNGQGEAVGGIVVMRYGENAKDVIDRVKVKIKELEKGLPPGVKIMVSY 323

Query: 657 VGPKISRELIRKGIVGVII-SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    I      ++  S +  L+ +     +  AL  + TL + +  +     L G
Sbjct: 324 DRSDLIARAIDTLKHSLLEESIVVSLVILIFLLHFQSALVIVLTLPIAVLISFITMKLMG 383

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           +  N+ ++  +   IG  V+  V++ +   R    M     +    ++I  S  +     
Sbjct: 384 VTSNIMSLGGIAIAIGVLVDAGVIMVENCYRHLSEMPPEERAAKRLEVIITSAKQVGRAI 443

Query: 773 VYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            ++     +S +P+ +  G    +    A    F ++ +A  +I +   ++ F    +  
Sbjct: 444 FFSLAIIILSFVPVFLLEGQEGKMFHPLAFTKTFSMMGSAFIAITLVPVLMYFFMRGKMP 503

Query: 830 N 830
            
Sbjct: 504 P 504



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 72/195 (36%), Gaps = 11/195 (5%)

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAITTLILDITKTL 708
                      +   ++  K  + +++ A  ++I+I + F ++ AL  ++  L +      
Sbjct: 844  PPGYYVAWSGQWENQIRAKARLQMLVPAGILIIFILLYFTFHSALEASMVMLSVPFALIG 903

Query: 709  GFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-----TSISFRDLI 761
            G +  +  G   ++      + L G +V   VV+   + + +         T     D  
Sbjct: 904  GVYLVSALGYNMSVAVWVGFIALYGIAVETGVVMVIYLHEALDKKLINGPCTEQDIYDAT 963

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T   A + ++P+      G  V+   A PM  G++ +A   + +   
Sbjct: 964  FEGAVLRLRPKLMTVAVALLGLVPIMWSSGTGADVMKPIAAPMIGGMISSAIHVLIMTPV 1023

Query: 819  ILLFIYDWRAKNARI 833
            I + +     K  ++
Sbjct: 1024 IFVLMKKHDLKKGKL 1038


>gi|330950466|gb|EGH50726.1| hydrophobe/amphiphile efflux-1 HAE1 [Pseudomonas syringae Cit 7]
          Length = 396

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 37/412 (8%), Positives = 100/412 (24%), Gaps = 28/412 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  +I   G +        Q  +  +P  +P   +                  
Sbjct: 10  RPIFAAVLSLLILIAGAISLF-----QLPISEYPEVVPPTVV---------VRANFPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              +   +    ++  + ++                +T++FA     +N   +V   +  
Sbjct: 56  PKVIGETVASPLEQAITGVEGMLYMSSQATADGKLTLTITFALGTDLDNAQVQVQNRVTR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  +  +          ++            +  S   +    D++       
Sbjct: 116 SEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++      T   +       N        G     ++   Q 
Sbjct: 176 DVQLFGMGDYSLRVWLDPNKTASRNLTATDVVNAIREQNRQVAAGQLGSPPSPNATSFQM 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +  +                 +    +                 I    +      
Sbjct: 236 SINTQGRLVSEE-------------EFENVVVRAGADGEITRLKDIARIELGSSQYALRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L            +   +            A L+          +         GS   
Sbjct: 283 LLNNQPAVAIPIFQRPGSNAIDISNDVRARMAELKQSFPEGMDYSIVYDPTIFVRGSIEA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
              T      LV++V+ + +   +  ++   ++ +++I T A++ + G +L 
Sbjct: 343 VIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHMFGFSLN 394


>gi|92117592|ref|YP_577321.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
 gi|91800486|gb|ABE62861.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
          Length = 1042

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/622 (10%), Positives = 154/622 (24%), Gaps = 45/622 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +   G L           +   P                     L   
Sbjct: 9   RRPIATSLLGIALMIGGAL-----GYWALPISALPQVDFPTVQ---------VRTQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   L    +     +        +     ++I+L F   R  +     V   +  
Sbjct: 55  SPDVVASLLTAPLERQLGQIPSLSSMASTSSFGVSQISLQFNLDRDIDGATQDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +              + V++   +          S         ++       
Sbjct: 115 AAGILPKNLPYPPTYAKVNPADAPVMT-LALTSDTVSLRAMSDIADTILTQRLSQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +  + D +RL     +   +                         G   
Sbjct: 174 RVSVLGGLKPAVRVQADLARLAAYGISMEDLRAGIA--------------------GANV 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN           I                 I   L     G 
Sbjct: 214 SGPKGSLDGAQQAYTIAANDQIAVADAYKPIIIAYRNGSPVTIGDVAQIVDGLENDRTGG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    +         ++          V          S   
Sbjct: 274 WYNGTPAVIIDIQRQPGANVIEVVRQIREEIPKVQRAIPAGVKLTVVSDRTVTIRASVHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV +V+ + +   +  L+A  ++ L++I +  ++   G +L   S+  + 
Sbjct: 334 VQFTLILSVVLVTLVVLLFLRSLRATLIAGVALPLSLITSFGIMYFAGFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +G G  VD  I++ E I       +SV  +   G S    T+    ++ +   + L F  
Sbjct: 394 IGTGFVVDDAIVMIENIVRHIENGESVMEASLRGASEIGFTVISLTVSLIAVFIPLLFMS 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------IDINPLSRF 531
              G   R FA+T+ ++++ S   ++++   M   ++++   +        +  +     
Sbjct: 454 GLVGRMFREFALTLTIAVVTSAIVSLTLTPMMCSRLLKHSGGERAVPGMAAVSRSIDRMV 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +       R   V +    +   +  +        +     I     A   V  
Sbjct: 514 EFYHRTLLWVLRHQRATLVVVFATVAATMVLYVVAPKGFLPLQDTASITAVTEAGPDVSF 573

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
           + +R +   +        +  G
Sbjct: 574 AEMRKHQAEVANVIKEDPDVTG 595



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/133 (15%), Positives = 50/133 (37%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSLRATLIAGVALPLSLITSFGIMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      S  +   +  +E     +  +++     +P+    G V      FA+ +   
Sbjct: 411 VRHIENGESVMEASLRGASEIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAA 817
           +V +A  S+ +  
Sbjct: 471 VVTSAIVSLTLTP 483



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 80/209 (38%), Gaps = 8/209 (3%)

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +    +E VK   T I   S+I            + +      ++ + + + I + + +
Sbjct: 817  ESLGDAVERVKTIETHIGMPSSIVGVFSGDAAEFSKSLAGQPWLILAALVTIYIVLGVLY 876

Query: 689  KWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            + Y     I + +    +   L    LFG + ++  +  ++ L+G    + +++ D   +
Sbjct: 877  ESYIHPITILSTLPSAGVGAILALM-LFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALE 935

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                    +S  + I ++        + T++AA    LP+A+    G  +     I +  
Sbjct: 936  --AERHQGMSPTEAIVQACLLRFRPIMMTTLAALFGALPLAIESGTGAELRFPLGISIIG 993

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G++++   +++    I L +     +  +
Sbjct: 994  GLLLSQLLTLYTTPVIYLALDRLNKRIEK 1022


>gi|89099290|ref|ZP_01172167.1| cation efflux system [Bacillus sp. NRRL B-14911]
 gi|89085899|gb|EAR65023.1| cation efflux system [Bacillus sp. NRRL B-14911]
          Length = 1073

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 80/644 (12%), Positives = 188/644 (29%), Gaps = 38/644 (5%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLV-LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
            L   P   P            G  +   +    + V+  +    ++  + L        
Sbjct: 16  PLKLIPDINPPV----------GVVVTNYQGASPEEVSEKVTKPLEQSLATLPGLKTMTA 65

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
           + ++  N + L F+ +   + +  ++   L    + L  D  K   +     +  I+   
Sbjct: 66  TSQESANLVLLEFSWTTDIDEVQSEIIQRLDQ--TPLPDDVDKPRFLKFDPSQFPIIQLS 123

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
            + D         +     Q   ++   +       S   + ++  E D  +LR+   + 
Sbjct: 124 LSSDSDEESLRSIA----EQLELELTKVDGVASVNLSGTSIKEVRVELDQDKLREYRLSQ 179

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           + +       + S  G                ++    E++   ++   +    K    +
Sbjct: 180 SDIVDTIQANDISLPGDT--------------ILTGGKELTTRVISSIDSVDILKK---L 222

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           V  +    G     +                R    P +  ++       +   + E   
Sbjct: 223 VVAANPSNGNEVLLQDVASVQLVNQDDRTITRTNQEPSVLLSVLQQSDSNTAEVSKEFIS 282

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            L  +L         + +          +      +  +     ++VLF  +   K  L+
Sbjct: 283 QLDELLEKDQYEGIESDILFDQGDYIQQAIGNISTSLLLGGLFAMLVLFFFLKNVKSPLI 342

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              +I  +VI T  L+     TL + ++ G+ LGIG+ VD++I+V E I       +   
Sbjct: 343 IGIAIPYSVIFTFVLMYFSNFTLNIMTLGGLALGIGMLVDNSIVVIENIYRHLSMGKDPK 402

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISI 506
            +   G     + I  S +T +   + + F     G     FA+T+  S+  S+  A+++
Sbjct: 403 EAARDGAGEVGAAITASTLTTVAVFLPVVFITGIIGQLFTEFALTISFSLFASLVVALTV 462

Query: 507 VRAMMI-FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           V  +    +   K          +    +   +           + + IL +     +  
Sbjct: 463 VPMLASRLLKAPKTNLEEKRQESAIMKGLERSVKWALRNRLAVLIIMLILLAGGGYGITT 522

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                     +G   + V       L+     + +L+       + +   + +   Q   
Sbjct: 523 VGTQFLPNSDEGFFSVRVNLENGSALTETEKVMAALEEQLKEQDDVETYVSLIGTTQESS 582

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                   V E+  K         +         +       K 
Sbjct: 583 FRGSGNPNVAELYVKMKDLEERDRSTFEFVDDVKRDLERAAEKA 626



 Score = 94.4 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 87/224 (38%), Gaps = 7/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V+   +   S     +  +V  +I ++      +       ++    I   ++  
Sbjct: 784  NQQDAVQFTLKYKTSTNLGAISNLVDDEIADLDLPEETEIVFGGDRELLESSIDDMLLAF 843

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I++ + + + +  +F+   +    + T+ L +              +LTA+  ++ L G 
Sbjct: 844  ILAVVFIYLVMAAQFESLKYPFVIMFTVPLMVIGVAIALTATRTPVSLTAIIGIIVLAGI 903

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
             VN+ +V+ D +    +   + +   D I  S+ +     + T++   + ++P+A+    
Sbjct: 904  VVNNAIVIVDYIN---QKKASGMKTYDSIVVSVKDRARPILMTALTTILGLIPLALGIGE 960

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G  +     I +  G++ +   ++F+   +  F      K  ++
Sbjct: 961  GAEINQPMGITVIGGLISSTFLTLFVIPVVYSFFDKDTRKLNKM 1004



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/247 (11%), Positives = 76/247 (30%), Gaps = 15/247 (6%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           ++       +           +   V L            V +    ++ E++     + 
Sbjct: 236 LQDVASVQLVNQDDRTITRTNQEPSVLLSVLQQSDSNTAEVSKEFISQLDELLEKDQYEG 295

Query: 654 TEIVGPKISRELIRKGI-----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            E        + I++ I       ++    AML+  +        L     +   +  T 
Sbjct: 296 IESDILFDQGDYIQQAIGNISTSLLLGGLFAMLVLFFFLKNVKSPLIIGIAIPYSVIFTF 355

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                     N+  +  +   IG  V++ +VV + +    +  +     ++       E 
Sbjct: 356 VLMYFSNFTLNIMTLGGLALGIGMLVDNSIVVIENI---YRHLSMGKDPKEAARDGAGEV 412

Query: 769 LGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 +++      L  + + G  G +   FA+ ++F    +  +S+ +A  ++  +  
Sbjct: 413 GAAITASTLTTVAVFLPVVFITGIIGQLFTEFALTISF----SLFASLVVALTVVPMLAS 468

Query: 826 WRAKNAR 832
              K  +
Sbjct: 469 RLLKAPK 475



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 69/525 (13%), Positives = 149/525 (28%), Gaps = 27/525 (5%)

Query: 3    NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
             N   V++  +I   G    +     Q + +               +L  GS L      
Sbjct: 500  RNRLAVLIIMLILLAGGGYGITTVGTQFLPNSDEGFFSVRV-----NLENGSALT----- 549

Query: 63   DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                    +     L   LK++      +  I      SF  S         V +     
Sbjct: 550  ------ETEKVMAALEEQLKEQDDVETYVSLIGTTQESSFRGSGNPNVAELYVKMKDLEE 603

Query: 123  NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              +         +              N+  +V  +    +          +  +     
Sbjct: 604  RDR----STFEFVDDVKRDLERAAEKANSTAEVSFNLQSSAGSAPNTLSFSVRDTNEKRL 659

Query: 183  RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +I   L    D + L   L  T +     V    ++   +   +     +     
Sbjct: 660  NESVDKIYNSLKDLDDVNELSTDLMDTVEEIQITVDREKARAAGLAPAQVAMIVNDVTRG 719

Query: 243  VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +    I     +     F     +   ++   +    R  + +   + +  A+      
Sbjct: 720  NQATQII--DESSNIYGVFVEYDPEVTQNLDNLKKLLLRKPDGSYTTLDQVAAIERGEGP 777

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            +    INQ             T   A           L +            +L   SI 
Sbjct: 778  VNIQRINQQDAVQFTLKYKTSTNLGAISNLVDDEIADLDLPEETEIVFGGDRELLESSID 837

Query: 363  KGTCAIVAGLVLIVLFMIVL--YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                A +  +V I L M       K+  V  F++ L VI     L+     ++L +I GI
Sbjct: 838  DMLLAFILAVVFIYLVMAAQFESLKYPFVIMFTVPLMVIGVAIALTATRTPVSLTAIIGI 897

Query: 421  VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            ++  G+ V++ I++ + I ++       + S+ +        I  + +T ++  + L   
Sbjct: 898  IVLAGIVVNNAIVIVDYINQKKASGMKTYDSIVVSVKDRARPILMTALTTILGLIPLALG 957

Query: 480  --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
               G    +   IT+   ++ S F  + ++  +  F  +  +  +
Sbjct: 958  IGEGAEINQPMGITVIGGLISSTFLTLFVIPVVYSFFDKDTRKLN 1002


>gi|114776412|ref|ZP_01451457.1| Acriflavin resistance protein [Mariprofundus ferrooxydans PV-1]
 gi|114553242|gb|EAU55640.1| Acriflavin resistance protein [Mariprofundus ferrooxydans PV-1]
          Length = 1032

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/608 (11%), Positives = 170/608 (27%), Gaps = 48/608 (7%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
               ++ +++   GL+      + +     FP  +    +  GLD              D
Sbjct: 12  VLAWMMSALLVLFGLISYQRIGVDRFPTVDFP-MVSVTTVQTGLD-------------PD 57

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            ++  +    +E  + +      +       + +T+ F  S+  +   ++V   +  +  
Sbjct: 58  VIDASITSIIEEKLNSVPGIDHVISYSTPGVSIVTVQFKLSKNIDVAFNEVQAKVNQILR 117

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +L       ++         I+      D       + +         ++       +  
Sbjct: 118 QLPDGTDPPVVAKVEIGASPILWLSLTGD---RTLQQLNQYARNIIKKRLENINGVGEVQ 174

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                   +    D  R++ +  T A +       +    G                   
Sbjct: 175 IGGERKRTVRIWLDLPRMQGMGITIADVLSAFRREHIQFPGGFL---------------- 218

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
                 G        + +  +   +  +                 +   LA         
Sbjct: 219 ----TGGKREYMIKLDMEFHSLDAIGKLVVRARDGNLIRLSDIGRVEDGLADDRQLARYN 274

Query: 305 APVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                          +    ++     L   +           +   +     G      
Sbjct: 275 GKPTVGIGVVKVTGANVVAIVDEVKQRLNNEILPALPVGMKIGIATNDADIVRGIVDGLI 334

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   L  IV+ + +   +  L+   +I ++++  +A   LLG TL L ++  ++L 
Sbjct: 335 EHIFESVLLAAIVVLVFLKSLRSTLIVATAIPVSMLAAIATAYLLGFTLNLMTLLALLLL 394

Query: 424 IGLAVDSNILVNERIREENRKN---QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           IG+ VD  I+V E I     K     +   ++       ++ I  S     I   V+F  
Sbjct: 395 IGVVVDDAIVVLENIYRHREKGLEPDARTAAIAGSRQVTFAVIAASLTLVAIFAPVIFMD 454

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G     FA+ +   +L S+F ++++V  +    ++ +          +R  L  D  
Sbjct: 455 GMIGRFFNAFAVIVTFGVLASLFVSLTLVPMLASRYLKVQTEHGRLYGLFNRALLWLDRF 514

Query: 539 AIQFMRAR-----FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + +           +   + F   +             + +G   +   A     ++ 
Sbjct: 515 YTRLLGWCLRHRGTVLLLALVGFIASTSLFGMIGKGFVPKEDEGRFMIIFKAPLGASIAD 574

Query: 594 VRSNLESL 601
               L+++
Sbjct: 575 TDGRLKAV 582



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/202 (17%), Positives = 78/202 (38%), Gaps = 5/202 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              + R+   +   +   + +    N   +   I   LI      V+++AI +L+++   
Sbjct: 296 DEVKQRLNNEILPALPVGMKIGIATNDADIVRGIVDGLIEHIFESVLLAAIVVLVFL--- 352

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L   T + + +   +    L G   NL  + A+L LIG  V+D +VV + + ++
Sbjct: 353 KSLRSTLIVATAIPVSMLAAIATAYLLGFTLNLMTLLALLLLIGVVVDDAIVVLENIYRH 412

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +      +    I  S   T    V  +    +++    ++   +IG F    A  +  
Sbjct: 413 REKGLEPDARTAAIAGSRQVTFA--VIAASLTLVAIFAPVIFMDGMIGRFFNAFAVIVTF 470

Query: 808 AASSSIFIAAPILLFIYDWRAK 829
              +S+F++  ++  +     K
Sbjct: 471 GVLASLFVSLTLVPMLASRYLK 492



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/163 (10%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            +  +    I+ + + + +  +F         +    + I   +    + G   N+ ++  
Sbjct: 851  KNMMFAFGIAMLLVFMVLASQFNSLAQPWVLMLAQPMAIIGGVAALWMTGNTLNIFSMIG 910

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G    + +++ D      +     +   D + ++    +   + TSM    ++LP
Sbjct: 911  LVLLVGLVAKNSILLVD---LTNQYRQQGMGIDDALREACPIRMRPVLMTSMTIIFALLP 967

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             A+    G  +    ++ +  G++ +   ++ +       + +
Sbjct: 968  TALGLGKGSEMTIPMSVAVIGGMISSTLLTLVVVPAAYSLLEN 1010


>gi|39935641|ref|NP_947917.1| acriflavin resistance protein [Rhodopseudomonas palustris CGA009]
 gi|39649494|emb|CAE28016.1| possible RND efflux transporter [Rhodopseudomonas palustris CGA009]
          Length = 1035

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/561 (11%), Positives = 145/561 (25%), Gaps = 38/561 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G++           +   P+      +                 
Sbjct: 10  RRPVGTTLLAIGLFLVGMVA-----YAVLPVAALPNVDFPMIM---------VQASRPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +      +I L F+  R  ++ A  V   +  
Sbjct: 56  APSVMASTVAAPLERRLGEIAGLDQITSTSSLGNTRIQLQFSIGRNVDSAARDVQAAINA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  D              + V     +      A             +I       
Sbjct: 116 AVSDLPTDLPTLPKFRKFNSAAAPVYI-LALTSKTMPASAIYDVADTVLAQRISQVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +    +P  L     +T  +    +  N       F    L ++     
Sbjct: 175 DVTVSGADQPAVRIALNPVALSNAGISTDDVRTAIINANPVGPVGSFDGPRLTETLSTN- 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                 +T +    I                 +           
Sbjct: 234 -------------------PQMRTAEQFRSIVIKSDTNGTVRLSDVATVSDATRNARTIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +   T++    L   L+          V     G    S   
Sbjct: 275 WYNKQPAVIIQITKQGDANVIETVDRVKALLPELKQWIPAGVDISVLADRTGTIRASVDD 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A LV+ V+ + +      + A  S+ L +  T A + + G ++   S+  + 
Sbjct: 335 MQWTLLATAVLVMAVVLLFLRRLTPTIAAGVSVPLALAGTCAGMWISGFSINNLSLMALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E +     +  +   +   G  +   T+   +++ + A   L F  
Sbjct: 395 IAVGFVVDDAIVMIENMYRNLERGMAPLPAAMEGARQIGFTVLSISLSLVAAFAPLIFMD 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  +R F++T+  +I++S   ++++   +    IR +          +    +   +
Sbjct: 455 GLIGRLLREFSLTLTFAIVVSTVVSLTVTPMICAHYIRAEASPKQTWFDRAVEGTLNRIV 514

Query: 539 AIQFMRARFWGVGISILFSIC 559
                  R       +   + 
Sbjct: 515 GFYAWTLRGVLSVPWLTVVVF 535



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 69/199 (34%), Gaps = 10/199 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----RKG 669
            K   V +Q            ++ VK  + E+           V    +  +        
Sbjct: 277 NKQPAVIIQITKQGDANVIETVDRVKALLPELKQWIPAGVDISVLADRTGTIRASVDDMQ 336

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              +  + + M + +    +    + A  ++ L +  T     + G   N  ++ A+   
Sbjct: 337 WTLLATAVLVMAVVLLFLRRLTPTIAAGVSVPLALAGTCAGMWISGFSINNLSLMALAIA 396

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G+ V+D +V+ + M +N+      ++      +   +     +  S++   +  P+   
Sbjct: 397 VGFVVDDAIVMIENMYRNL---ERGMAPLPAAMEGARQIGFTVLSISLSLVAAFAPLIFM 453

Query: 790 GGSV---IGSFAIPMAFGI 805
            G +   +  F++ + F I
Sbjct: 454 DGLIGRLLREFSLTLTFAI 472



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 81/248 (32%), Gaps = 10/248 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +   V LS V      L    ++                      A   +   V +
Sbjct: 776  VDSTSGDQVPLSAVVRAERGLAALAVAHTQGVPSTTVSFNTLPDVPLQEATANIQRAVDE 835

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITT 699
                     +           S     K  + ++ + IAM I + + ++     L  I+T
Sbjct: 836  LHMPEGIRGSFDGNAGDFRATSN----KQPLLILAAFIAMYIVLGVLYESLAHPLTIIST 891

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    + G E ++ A   ++ LIG    + +++ D   +        +   D
Sbjct: 892  LPSAGLGALLALLVTGTELSVIAFVGIIMLIGIVKKNGIMMVDFALE--AERERGLPSAD 949

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T++AA  + +P+ V    G  +     I +  G+ V+   +++  
Sbjct: 950  AIFEACIVRFRPILMTTLAALFAAIPLVVAVGPGTELRRPLGITIIGGLFVSQVLTLYTT 1009

Query: 817  APILLFIY 824
              I L I 
Sbjct: 1010 PVIYLLID 1017


>gi|283767631|ref|ZP_06340546.1| membrane transporter [Staphylococcus aureus subsp. aureus H19]
 gi|283461510|gb|EFC08594.1| membrane transporter [Staphylococcus aureus subsp. aureus H19]
          Length = 829

 Score =  139 bits (348), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/592 (12%), Positives = 191/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ N +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYNVSQTSLKDDSRDNIKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYVKGIGLAVGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 581

Query: 720 LTAVAAVLTL-----IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A +L +      G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLLVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L   + + + +      ++N    K+          +    +
Sbjct: 79  TKDDGIVQPSITKDIKKTLDDFKKDDKHIDKISDPYENKQISKDKTTAFADITYNVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +      + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDDSRDNIKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYVKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKRIKVNK 338


>gi|229543293|ref|ZP_04432353.1| acriflavin resistance protein [Bacillus coagulans 36D1]
 gi|229327713|gb|EEN93388.1| acriflavin resistance protein [Bacillus coagulans 36D1]
          Length = 1065

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/689 (11%), Positives = 187/689 (27%), Gaps = 67/689 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN + + L ++I     + A  N      ++  P+                 ++++   +
Sbjct: 10  NNKFAIWLMTLIVAGAGIYAGMN----MKMETIPNIDAP-------------YMLVTASD 52

Query: 63  DDFVNGFLQMYS-DELRSFLK---KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  ++      +   LK          S  +  ++I L +      +     +   
Sbjct: 53  PGATPEEVENKITQPIEQRLKNLTGVNTVSTSSTESNSQIQLEYKYGTDMDQAKKDIQDA 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L+ V   L  +  K  +   +  +  I+    ++          +  +    + ++   +
Sbjct: 113 LEKV--DLPDNIDKPSVTRISINDFPIL--SLSVSDKSRSFQHLTKIVEEDLVPKLQSID 168

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                  S + + ++       +L  L      +       N S    +        S  
Sbjct: 169 GVSDVQASGQYVQEVQLTFKQDKLNALGLDEDTVKKAIQGANVSVPLGLINFGKENKSVE 228

Query: 239 NQYLVED----------------------------------KVEISGIHLNGATANFDPK 264
               V+                                     + SG   +GA A+   +
Sbjct: 229 IDGNVKSLKHFENLKIPYTPKTGAASASSAAAQASGAQSPNAAQTSGTQASGAHASGAQQ 288

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
                   +   +G          +I K +                   +     +    
Sbjct: 289 PANAGTQATQANVGMPTVALKEIADI-KVVGKHESISKTNGKDSIGIQITKAPDANTVDV 347

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
            +     AA  +A                    S         I A   ++V+ + +   
Sbjct: 348 ADAVNKKAAQFKADY-KGTQISTILDQATPIKDSVKTMFEKAIIGAVFAIVVILLSLRNV 406

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  ++A  SI L+V++   +L  L  TL + ++  + + IG  +D +I+V E I      
Sbjct: 407 RSTIIAVISIPLSVLIAFIILHQLDITLNVMTLGAMTVAIGRVIDDSIVVIENIYRRLTL 466

Query: 445 NQSV---FCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILI 498
            +        +       +  +  S I  +I  V L       G     FA+T+  ++L 
Sbjct: 467 REEKLRGKALIREATVEVFKPVMSSTIVTVIVFVPLALVRGMVGELFMPFALTLIFALLA 526

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           S+  AI++V      + +    K+          +      I         V   I   +
Sbjct: 527 SLLVAITVVPMFAHSLFKNGLKKNTRTTNEGHGRIALFYKKILNWSLNHKLVTFGIACLL 586

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
               L     +        G ++      P     +    +     +    +    KN  
Sbjct: 587 LIGSLFLIPLIGVSFIENEGQKVVYATYAPEPGETLSDVKKIAGKAEDYLIHRKNVKNVQ 646

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +      + + + +  +   + T+   
Sbjct: 647 YSIGESAFSTNSNSAIFVVEYDQDTKNFD 675



 Score = 92.4 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 33/317 (10%), Positives = 97/317 (30%), Gaps = 3/317 (0%)

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
           K +K  +   +          A             +   +  +                G
Sbjct: 234 KSLKHFENLKIPYTPKTGAASASSAAAQASGAQSPNAAQTSGTQASGAHASGAQQPANAG 293

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                     P       ++++ +   +   +    +   +   +    ++V     +  
Sbjct: 294 TQATQANVGMPTVALKEIADIKVVGKHESISKTNGKDSIGIQITKAPDANTVDVADAVNK 353

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
              +       + I         I   +       +I +  A+++ +         + A+
Sbjct: 354 KAAQFKADYKGTQISTILDQATPIKDSVKTMFEKAIIGAVFAIVVILLSLRNVRSTIIAV 413

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ L +           I  N+  + A+   IG  ++D +VV + + + + L    +  
Sbjct: 414 ISIPLSVLIAFIILHQLDITLNVMTLGAMTVAIGRVIDDSIVVIENIYRRLTLREEKLRG 473

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF 814
           + LI ++  E     + +++   I  +P+A+     G +   FA+ + F ++ +   +I 
Sbjct: 474 KALIREATVEVFKPVMSSTIVTVIVFVPLALVRGMVGELFMPFALTLIFALLASLLVAIT 533

Query: 815 IAAPILLFIYDWRAKNA 831
           +       ++    K  
Sbjct: 534 VVPMFAHSLFKNGLKKN 550



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 81/221 (36%), Gaps = 7/221 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               +         +    +V + V+ K+ ++     I        +   +   K    ++
Sbjct: 843  DGKIYASVTGKIKTADVAKVTQQVQNKVDKLDIPKYIHVETGGVTEDINDSFTKLGYAML 902

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             +   + + + I F         + +L   +   L    L     ++TA+   L LIG  
Sbjct: 903  AAVAIVYLVLVITFGGALAPFTILFSLPFAVIGALVALYLAHETISVTAMIGALMLIGIV 962

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            V + +V+ DR+   +      +S R+ + ++    L   + T+ A   +++P+A+  G  
Sbjct: 963  VTNAIVLIDRV---VHKEKAGLSTREALLEAGATRLRPILMTAFATIFALIPLALGYGGG 1019

Query: 794  I---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                    I +  G+  +   ++ I   +  F+  +R K  
Sbjct: 1020 GLISKGVGITVIGGLTSSTLLTLIIVPVVYEFLMKFRKKEK 1060


>gi|288556850|ref|YP_003428785.1| putative acriflavin efflux system [Bacillus pseudofirmus OF4]
 gi|288548010|gb|ADC51893.1| putative acriflavin efflux system [Bacillus pseudofirmus OF4]
          Length = 1116

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 81/676 (11%), Positives = 188/676 (27%), Gaps = 42/676 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + ++   +    G +           L  FP+  P                     
Sbjct: 7   RRPKFTIVAMLLFLIFGFVSV-----TNLPLQLFPNINPPVA---------AVVTSYSGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   +          +  +    I L F+ +   +++   +   ++ 
Sbjct: 53  SPEEVEDKVTKPLESQLATTSGLNKISSTTSEGMTLILLEFSWTTSIDDVELDIINTIRQ 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D  +   +      + ++      D  I    +   +       ++       
Sbjct: 113 --TPLPDDANEPSFLKFDPSMMPMMQLAITGDDDILAIQDLVDD----LRLELEKVPGVA 166

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  ++ ++    +   L     T   +       N S  G       L  +     
Sbjct: 167 SIDEAGSMIEEVQINLNQDELTTNNLTQQDIIQTIQSHNTSMPGGTVSNGDLSLTTRVIS 226

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    EI                    + +     G+        +         +  R
Sbjct: 227 ELVTVEEIE------------------ELVVGVSADGSELTLTDVAEVEVTTGDTEVITR 268

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P I   I       +   +      +  +L          ++          + + 
Sbjct: 269 TNQEPAIQFTIMKESESNTVLVSNAVNDRMDELLDDSKYDELNAVMLYDEGSYINSAIAS 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L ++VLF  +   K  L+   +I  ++I+T A L   G  L L S+ G+ 
Sbjct: 329 VTNALIFGGILAMLVLFFFLRNLKTPLIVGIAIPFSIIVTFAFLYFAGIGLNLMSLGGLA 388

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIG+ VD+ I+V E I      N+    +   G     S I  S +T +   + + F  
Sbjct: 389 LGIGMLVDNAIVVIENIYRHLSMNKKPKQAALDGTKEVSSAIIASTLTTVSVFLPIVFIS 448

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FA+ +  S+L S+  A+++V  +   I++            S F    D  
Sbjct: 449 GLVANLFREFALAVSFSLLASLLVALTVVPMIASRILKKPNEDREAKRMQSSFMKGMDRS 508

Query: 539 AIQFMRAR-FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               +  R        IL  +  + L+           +G   + V   +   +   +  
Sbjct: 509 IRWVLMHRLAVLFITFILLVVGGLGLMNVGTELIPDSDQGTFTVDVELEQGTTVDRTQET 568

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           + +++     ++      +     +       + +   ++            +  +    
Sbjct: 569 VNAIEDVLSDYREISDFVSTAGSSEQNVMMGNSGSHQAQIFVNMAPLDQRQISTSDFIES 628

Query: 658 GPKISRELIRKGIVGV 673
                  + R   + +
Sbjct: 629 IETEVARVDRDAEISL 644



 Score = 89.4 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 98/241 (40%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  +  G+        ++   V        S     +  +V++ + E+        + 
Sbjct: 776  SEVAEIVEGESPATIQRMQQEEAVEFTVYYSTSTTLGDISRLVEEAVDEVELDEQTTFSY 835

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                ++  + I    + ++++ I + + +  +F+ +      + T+ L +          
Sbjct: 836  GGEQELLEDSIGSMALAIVLAIIFIYLVMAAQFESFKMPFVIMFTVPLVVIGVALALLAT 895

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                ++T    ++ LIG  VN+ +V+ D +    +   + +S  + +  S+ +     + 
Sbjct: 896  QTALSVTVFIGLIVLIGIVVNNAIVLVDYVN---QRKASGMSTFEALVVSVKDRTRPILM 952

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS+   + ++P+A+    G  +    A+ +  G++ +   ++F+  P++  ++D + +  
Sbjct: 953  TSLTTILGMVPLALGLGEGAELQQPMALAVIGGLISSTFLTLFVI-PVVYSLFDKQTRKR 1011

Query: 832  R 832
            R
Sbjct: 1012 R 1012



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/227 (13%), Positives = 71/227 (31%), Gaps = 7/227 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +    +      V    + +     I+  N +    F +  + +    +    V + + +
Sbjct: 241 VSADGSELTLTDVAEVEVTTGDTEVITRTNQEPAIQFTIMKESESNTVLVSNAVNDRMDE 300

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITT 699
            + +                     I      +I    +AML+  +        L     
Sbjct: 301 LLDDSKYDELNAVMLYDEGSYINSAIASVTNALIFGGILAMLVLFFFLRNLKTPLIVGIA 360

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +   I  T  F    GI  NL ++  +   IG  V++ +VV + +    +  + +   + 
Sbjct: 361 IPFSIIVTFAFLYFAGIGLNLMSLGGLALGIGMLVDNAIVVIENI---YRHLSMNKKPKQ 417

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
                  E     + +++      LP+    G V      FA+ ++F
Sbjct: 418 AALDGTKEVSSAIIASTLTTVSVFLPIVFISGLVANLFREFALAVSF 464


>gi|253681985|ref|ZP_04862782.1| protein-export membrane protein SecD [Clostridium botulinum D str.
           1873]
 gi|253561697|gb|EES91149.1| protein-export membrane protein SecD [Clostridium botulinum D str.
           1873]
          Length = 423

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 92/256 (35%), Gaps = 8/256 (3%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           Y    +  I L +  +     +         +I            N    +         
Sbjct: 152 YDETQRPTISLELKPDGAKKFAEATQKFLGKRITIYMDGEVLTSPNVQSVITGGKATITG 211

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWI 686
              + E  ++          +    +    +   L    +        +    +LI++ +
Sbjct: 212 SATMEEANRQAKIIQSGALPVSLEAVEFKTVGATLGANALPLSMKAGAVGIGLILIFMLL 271

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            +K    + A   LI  +   LG F +F +   L+ +A  L  +G +V+  V++++R+++
Sbjct: 272 YYK-GPGIMADIALIFYVLIVLGAFVMFKVTLTLSGIAGFLLTVGMAVDANVLIFERIKE 330

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++L     S    ++   N  L   + +++   I+ + +   G   +  FA+ +  GIV
Sbjct: 331 ELRL---GKSLNVAVNAGFNRALSSILDSNITTIIAGVVLYYLGSGGVKGFALTLMIGIV 387

Query: 807 VAASSSIFIAAPILLF 822
           ++  +++ +   ++  
Sbjct: 388 LSIFTALTVTRTLIRL 403



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 124/368 (33%), Positives = 218/368 (59%), Gaps = 27/368 (7%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +   + V +  IE+++E++  R++  G+ E+++QR G +RI I++PGE D  ++ + 
Sbjct: 63  VLEEIKGNDVKNETIERTIELLSMRVNPEGVKETSVQREGKNRIRIEIPGEFDSKKVLES 122

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T K+ F                               KV ++G  +      +  +T
Sbjct: 123 IGKTGKLEFKGPDN--------------------------KVILTGTDV-NKATAYYDET 155

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +P + +     GA++F E T+  +GK + + +DG VLT+P +   I  GKA I+G+ T+
Sbjct: 156 QRPTISLELKPDGAKKFAEATQKFLGKRITIYMDGEVLTSPNVQSVITGGKATITGSATM 215

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A ++++G+LP+ L  VE + VGA LG++++     A   G+ LI++FM++ Y  
Sbjct: 216 EEANRQAKIIQSGALPVSLEAVEFKTVGATLGANALPLSMKAGAVGIGLILIFMLLYYKG 275

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++AD ++   V++ L    +   TLTL  IAG +L +G+AVD+N+L+ ERI+EE R  
Sbjct: 276 PGIMADIALIFYVLIVLGAFVMFKVTLTLSGIAGFLLTVGMAVDANVLIFERIKEELRLG 335

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +++ GF+RA S+I DSNIT +IA VVL++ G G V+GFA+T+ + I++S+FTA++
Sbjct: 336 KSLNVAVNAGFNRALSSILDSNITTIIAGVVLYYLGSGGVKGFALTLMIGIVLSIFTALT 395

Query: 506 IVRAMMIF 513
           + R ++  
Sbjct: 396 VTRTLIRL 403



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 57/409 (13%), Positives = 123/409 (30%), Gaps = 23/409 (5%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
             L+ +      +IA   F     +  +        I+ GLDL+GG  ++ E+  +D  N
Sbjct: 15  TALFILAVLAIGIIAYSGFFGIKNIFGYRVKSFSESINKGLDLQGGISVLEEIKGNDVKN 74

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKL 126
             ++   + L   +  EG+   S+++   N+I +        + + + +    +      
Sbjct: 75  ETIERTIELLSMRVNPEGVKETSVQREGKNRIRIEIPGEFDSKKVLESIGKTGKLEF--- 131

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                        + ++ +  +  N         ++    +  + D         Q+   
Sbjct: 132 ----------KGPDNKVILTGTDVNKATAYYDETQRPTISLELKPDGAKKFAEATQKFLG 181

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
            RI I + GE   S   Q + T  K +                ++        + +    
Sbjct: 182 KRITIYMDGEVLTSPNVQSVITGGKATITGSATMEEANRQAKIIQSGALPVSLEAVEFKT 241

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V   G  L         K     + +    M           +I     V++        
Sbjct: 242 V---GATLGANALPLSMKAGAVGIGLILIFMLLYYKGPGIMADIALIFYVLIVLGAFVMF 298

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   +      +        A +L        L +  ++    N G +    SI     
Sbjct: 299 KVTLTLSGIAGFLLTVGMAVDANVLIFERIKEELRLGKSLNVAVNAGFNRALSSILDSNI 358

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +   V+      + Y   G V  F++ L + + L++ + L  T TL 
Sbjct: 359 TTIIAGVV------LYYLGSGGVKGFALTLMIGIVLSIFTALTVTRTLI 401


>gi|108563013|ref|YP_627329.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori HPAG1]
 gi|107836786|gb|ABF84655.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori HPAG1]
          Length = 1028

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTSYIRTSIEDVKFDLILG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     +     
Sbjct: 513 HKLIISIAVVLVFVGSLFVASKIGMEFM 540



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   V 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 39.7 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       ++ + +A+L+           L +  ++ +
Sbjct: 300 QAISPSYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|148381014|ref|YP_001255555.1| protein-export membrane protein SecD [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932413|ref|YP_001385385.1| preprotein translocase subunit SecD [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935196|ref|YP_001388792.1| preprotein translocase subunit SecD [Clostridium botulinum A str.
           Hall]
 gi|148290498|emb|CAL84626.1| protein-export membrane protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152928457|gb|ABS33957.1| protein-export membrane protein SecD [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931110|gb|ABS36609.1| protein-export membrane protein SecD [Clostridium botulinum A str.
           Hall]
          Length = 422

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 81/198 (40%), Gaps = 4/198 (2%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +    +    K   +           VG  +    +   +   ++    + +
Sbjct: 207 VITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFL 266

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ I ++    L A   L+L I   L  F+       L+ +A  L  IG +V+  V++++
Sbjct: 267 FMLIYYRVP-GLLADIALVLYIVLVLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFE 325

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   T  S +  ++   +  L   + +++   I+ + +   G   +  FA+ + 
Sbjct: 326 RIREELK---TGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLM 382

Query: 803 FGIVVAASSSIFIAAPIL 820
            GI+++  ++I +   +L
Sbjct: 383 IGIILSMFTAIVVTRLLL 400



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 133/385 (34%), Positives = 227/385 (58%), Gaps = 26/385 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +L +   D+V    +++++E+I  R++++G+SE+T+ R G  RI I++PG+ +   +   
Sbjct: 61  MLEEIQADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDS 120

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T ++ F                             +    ++G  +  ATA  + + 
Sbjct: 121 VGKTGELKF--------------------------VGPDKSTILTGKDVKDATAYINQED 154

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           + P V +  +E G ++F + T+  IG+P+A+ +D   LT PV+   I +GKA I+G+ +I
Sbjct: 155 NSPTVGLDLNESGTKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSI 214

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A ++++G+LP+ +  VE R VGA LG++++     A V G+ L+ LFM++ Y  
Sbjct: 215 EEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFLFMLIYYRV 274

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD ++ L ++L LA  S + ATLTL  IAG +L IG+AVD+N+L+ ERIREE +  
Sbjct: 275 PGLLADIALVLYIVLVLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFERIREELKTG 334

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +L+ G+ RA S+I DSNIT +IA +VL+  G GAV+GFA+T+ + I++SMFTAI 
Sbjct: 335 KSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIV 394

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSR 530
           + R ++        + S+    + R
Sbjct: 395 VTRLLLKLGYDIGILNSLACFRVKR 419



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 75/250 (30%), Gaps = 6/250 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++N    ++   +  + + +          +  +        I+ GLDL+GG  ++ E+ 
Sbjct: 7   KSNKGKSVIIFTLLVVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQ 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D      +    + +   + K G+   ++ R+ Q +I +        + + D V    +
Sbjct: 67  ADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDSVGKTGE 126

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                  V P K+ ++T  + + +        +      ++ +    ++  D        
Sbjct: 127 LKF----VGPDKSTILTGKDVKDATAYINQEDNSPTVG-LDLNESGTKKFADATKKFIGQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      +  P  Q      + + T +K         N  K     V          
Sbjct: 182 PIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTV 241

Query: 241 YLVEDKVEIS 250
                   + 
Sbjct: 242 GATLGANALD 251


>gi|15611621|ref|NP_223272.1| putative efflux transporter [Helicobacter pylori J99]
 gi|4155092|gb|AAD06126.1| putative efflux transporter [Helicobacter pylori J99]
          Length = 1028

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGVMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTSYIRTSIEDVKFDLILG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRSGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVKEIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYMWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKLGMEFM 540



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   V 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGTAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       ++ + +A+L+           L +  ++ +
Sbjct: 300 QAISPSYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFLRSGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVKEIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|158424055|ref|YP_001525347.1| cation/multidrug efflux pump [Azorhizobium caulinodans ORS 571]
 gi|158330944|dbj|BAF88429.1| cation/multidrug efflux pump [Azorhizobium caulinodans ORS 571]
          Length = 1092

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/584 (13%), Positives = 169/584 (28%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +    +L   +   GLL           +   P                     +   
Sbjct: 9   RRSVATTLLTIGLGLSGLLA-----YFNLPVAPLPQVDIPTIQ---------VSASMPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    +     +        +    Q +ITL F  SR  +  A  V   +  
Sbjct: 55  SPDTMASTVATPLERHLGQIADVSEITSNSTLGQTRITLQFGLSRDIDGAARDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    + N          + V+   ++        +           ++   +   
Sbjct: 115 ARADLPAALRSNPTYRKVNPADAPVMI-LSLTSDTLSRGQLYDSAATVLQQKLSQVKGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +  E +PS L Q       +       N +                   
Sbjct: 174 QVTIGGSSLPAVRVEINPSALSQYGIGLEDVRAALAAANANSP----------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   S         N           +                 +   +  + +  
Sbjct: 217 ---KGAIESKGQRWQIYTNDQASKADAYRSLIIAYRNNAPVRISDVATVEDSVENIRNEG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         + S +   +   TI+    L   LRA         + +        S + 
Sbjct: 274 LANGKPSVLILISREPGANIIETIDRVKDLMPELRASIPADITLAIAQDRTATIRASVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   LV++V+F  +   +  L+   ++ ++++ T + + LLG +L   S+  + 
Sbjct: 334 VEHALLIAVILVVVVVFAFLRDARAALIPSVAVPVSLLGTFSAMYLLGYSLDNFSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E +       +S   +   G      T+   +I+ +   + L   G
Sbjct: 394 IATGFVVDDAIVVVENVIRHMEAGKSRLEAALAGAREVGFTVLSMSISLIAVFIPLLLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F++T+ ++IL+SM  +++    M  +++R  + +            +   I
Sbjct: 454 GIVGRFFREFSVTISVAILVSMVVSLTTTPMMCAYLLRPHRAERPGNRLGRAAERVFKGI 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              + R+  W +   +   +    ++  +   + +  KG     
Sbjct: 514 LAGYARSLDWALAHRLFILLLLGGVVALNVHLFSVVPKGFFPQQ 557



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 55/145 (37%), Gaps = 7/145 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL     + + +  T     L G   +  ++ A+    G+ V+D +VV + +   ++ 
Sbjct: 357 RAALIPSVAVPVSLLGTFSAMYLLGYSLDNFSLMALTIATGFVVDDAIVVVENV---IRH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
                S  +       E     +  S++     +P+ + GG V      F++ ++  I+V
Sbjct: 414 MEAGKSRLEAALAGAREVGFTVLSMSISLIAVFIPLLLMGGIVGRFFREFSVTISVAILV 473

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +   S+    P++        +  R
Sbjct: 474 SMVVSL-TTTPMMCAYLLRPHRAER 497



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/208 (13%), Positives = 87/208 (41%), Gaps = 7/208 (3%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   +       +  +++ + EI   +++  T     K+ ++ +    + ++++   
Sbjct: 869  TISFNLPEGKTIGDAVASIQRTMVEIGTPASVHGTFQGTAKVFQQSLSSQPLLILLALAT 928

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + + + ++ +   +  ++TL       +     F  EF+L A+  V+ LIG    + +
Sbjct: 929  VYVVLGVLYESFIHPITILSTLPSAGLGAVLALIAFNTEFSLIALIGVILLIGIVKKNAI 988

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +        +     I ++  +     + T++AA    LP+A+    G  +  
Sbjct: 989  MMVDFALE--AERQQGLPPAAAIREACLQRFRPILMTTLAAVFGALPLALASGTGAELRQ 1046

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFI 823
               I +  G++V+   +++ + P++   
Sbjct: 1047 PLGISIIGGLLVSQLLTLY-STPVVYLW 1073


>gi|86750018|ref|YP_486514.1| acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
 gi|86573046|gb|ABD07603.1| Acriflavin resistance protein [Rhodopseudomonas palustris HaA2]
          Length = 1038

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 64/612 (10%), Positives = 157/612 (25%), Gaps = 40/612 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P                     L     D V   +    +     +     
Sbjct: 29  YFSLPVSALPQVDFPTVQ---------VSTRLPGASPDVVASLITAPLERQLGQIPSLTA 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +     ++++L F  +R  +     V   +      L  +              + V
Sbjct: 80  MTSTSSFGVSQVSLQFDLNRDIDGATQDVQAAINAAAGILPKNLPYPPTYAKVNPADAPV 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++   +    +     S         ++       +      +   +  + D +RL    
Sbjct: 140 MT-LALTSTTASLRAMSDIADTMLAQRLAQISGVGRVAVLGGLKPAVRVQADLARLAAYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +                         G                    AN    T 
Sbjct: 199 ISMEDLRTAIA--------------------GANVSGPKGSLDGAQQAYTIAANDQIATA 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           +    I                NI   L     G               +   +    + 
Sbjct: 239 EAYKPIIVAYRNGSPVTIGDVANILDGLENDRTGAWYQGTPSVILDIQRQPGANVIEVVR 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L+          V          S +  + T  +  GLV +V+ + +   + 
Sbjct: 299 GIRAEIPKLQRIIPAGVKLTVVSDRTETIRASVNDVQFTLLLSVGLVTLVVLLFLRSMRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            ++A  ++ L++I +  ++   G +L   S+  + +G G  VD  I++ E I     + +
Sbjct: 359 TIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENIVRHMEEGE 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           +   +   G S    T+    ++ +   + L F     G   R FA+T+ ++++ S   +
Sbjct: 419 NPMQAALSGASEIGFTVISLTMSLIAVFIPLLFMSGLVGRMFREFALTLTIAVVTSAIVS 478

Query: 504 ISIVRAMMIFIIRYKKMKS-------IDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           +++   M   ++++   +        I              +       R   V   +  
Sbjct: 479 LTLTPMMCSRLLKHAHEERQVPGLAAITRWIDRGAEAYHRSLLWVLKHQRATLVVTFLTI 538

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  +        +     I     A + V  + +++          +  +  G  +
Sbjct: 539 VATLALYVVAPKGFLPLQDTASITAVTEAGQDVSFAEMQARQTEAADAIKADPDVIGVVS 598

Query: 617 FLVRLQYQPGDS 628
            +      P  +
Sbjct: 599 VIGAGTVNPTTN 610



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSMRATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      +         +E     +  +M+     +P+    G V      FA+ +   
Sbjct: 411 VRHMEEGENPMQAALSGASEIGFTVISLTMSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAA 817
           +V +A  S+ +  
Sbjct: 471 VVTSAIVSLTLTP 483



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 65/178 (36%), Gaps = 6/178 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             ++ +K   T I    +I            + +      ++ + + + I + + ++ + 
Sbjct: 821 EAVDEIKVIETRIGMPGSIVGVFYGDAAEFSKSLSGQPWLILAALVTIYIVLGVLYESFI 880

Query: 693 ALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               I + +    +   L    LFG + ++  +  ++ L+G    + +++ D   +    
Sbjct: 881 HPITILSTLPSAGVGAILALM-LFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALE--AE 937

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               +S  D I ++        + T++AA    LP+AV           P+   I+  
Sbjct: 938 RHKGMSSYDAIVQACRLRFRPIMMTTLAALFGALPLAV-ESGTGSELRFPLGISIIGG 994


>gi|198284933|ref|YP_002221254.1| acriflavin resistance protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218667792|ref|YP_002427615.1| transporter, AcrB/AcrD/AcrF family [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198249454|gb|ACH85047.1| acriflavin resistance protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218520005|gb|ACK80591.1| transporter, AcrB/AcrD/AcrF family [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 1036

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/585 (10%), Positives = 153/585 (26%), Gaps = 41/585 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     VIL   +   G+            +   PS      +             L   
Sbjct: 9   RRPVMTVILVLGLVLYGIFS-----FTNMPVALLPSVDFPTVL---------VAASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +           Q   ++ L F  S+  +     V   +  
Sbjct: 55  SPQTMASAVATPLEKQFSSIPGLSSMSSVNNQGSTRVILQFDLSQNIDVATQNVQNAVTQ 114

Query: 122 VNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  L         +         I         +     + +   + + +  I      
Sbjct: 115 ASHLLPPGMPSLPFVKQLNPSAAPIEFIALAAPNMP--IYQLNQYAVDKVVPAISGIPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +    +P  ++    +   ++                         + 
Sbjct: 173 AQVQVFGEQNYAVRIHANPFAMQAHGISLQALTQAISS--------------------HN 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     +  +       +      +    +                 +   +      
Sbjct: 213 VNLPQGTVLGAVRNYAVNVHGQLHDAEAFAGMPITFANGAVVPLADIAEVRNGVDNDQIA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +         +       +L A         V          +  
Sbjct: 273 SWIGGQRALILAVVRQPDADTVAISDAIQKRLPLLSASLPGGAHMTVVYNKADYIRAAVE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  + + LV  VL++ +  G   L+   +I  +++ T A++  LG TL   ++  +
Sbjct: 333 EVEVTLLLASILVAGVLWLFLRRGSPTLIGALAIPASILGTFAIIYELGYTLNTLTLLAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  +++ E I       +  + +  +G      T+    ++  +  +     
Sbjct: 393 TLSVGFVVDDAVVMLENIARHEENGEEPYQAAFVGSREIGFTVISMTLSLAVVFLPFLVM 452

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
           GG      R F IT+ + IL+S   ++++   +   ++    + +S       R      
Sbjct: 453 GGIIGRLFREFGITIAVVILLSGLISLTLTPMLCARYLRVKHQGQSRFERGFIRLRDWYG 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                 +  R W  G ++L  +  I L       +      G+ +
Sbjct: 513 RSLRTMLGHRGWVYGGALLSLLAMIGLFIILPKGFIPTEDSGMIM 557



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 84/247 (34%), Gaps = 12/247 (4%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V L+ +      +    IS  N          L        A   V +   K +   V  
Sbjct: 775  VPLAALAHFAYGVGPLSISHYNGLPSVTISFNLAPGVSLGNATQAVQDTAAKILPADVQG 834

Query: 649  STIQNTEIVGPKISR-ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                +            ++    V +I + +A+L        +   L  +T L L     
Sbjct: 835  EFGGSAAAFSQSTGSLPMLLLATVALIYAILAIL-----YEDFIHPLTILTALPLAGFGA 889

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            L    +F  E +L +   ++ L+G    + +++ D     +       +  D +  +   
Sbjct: 890  LLALWIFHQELDLFSFVGIIMLVGLVKKNGIIMVDFA---VHRRREGATAVDAMVDACIT 946

Query: 768  TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 + T++AA + +LP+A+    G        + +A GI+V+   ++++     +   
Sbjct: 947  RFRPIMMTNLAAVLGILPIAIGIGAGAESRVPLGVAVAGGIIVSQFLTLYVTPAFYVLFE 1006

Query: 825  DWRAKNA 831
             W+ +  
Sbjct: 1007 GWKGRWK 1013



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 89/260 (34%), Gaps = 7/260 (2%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +  HG  +  +   G+ +       V L+ +      +    I+          L  ++ 
Sbjct: 229 VNVHGQLHDAEAFAGMPITFANGAVVPLADIAEVRNGVDNDQIASWIGGQRALILAVVRQ 288

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
              D+VA +  ++     ++  +P               R  + +  V +++++I +   
Sbjct: 289 PDADTVAISDAIQKRLPLLSASLPGGAHMTVVYNKADYIRAAVEEVEVTLLLASILVAGV 348

Query: 684 IWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           +W+  +     L     +   I  T       G   N   + A+   +G+ V+D VV+ +
Sbjct: 349 LWLFLRRGSPTLIGALAIPASILGTFAIIYELGYTLNTLTLLALTLSVGFVVDDAVVMLE 408

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAI 799
            +    +                 E     +  +++  +  LP  V GG +      F I
Sbjct: 409 NI---ARHEENGEEPYQAAFVGSREIGFTVISMTLSLAVVFLPFLVMGGIIGRLFREFGI 465

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +A  I+++   S+ +   +
Sbjct: 466 TIAVVILLSGLISLTLTPML 485


>gi|209885803|ref|YP_002289660.1| acriflavin resistance protein [Oligotropha carboxidovorans OM5]
 gi|209873999|gb|ACI93795.1| acriflavin resistance protein [Oligotropha carboxidovorans OM5]
          Length = 1027

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 68/621 (10%), Positives = 174/621 (28%), Gaps = 30/621 (4%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           +        ++  +  +       +  Q  + I +    +      
Sbjct: 45  VTVTTSYPGASPELMQGFITTPIEQAVASAEGVDYMTSTSVQGVSTIQVFVRLNFDSNQA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             +V   +  V   +  +    ++  +T +  +++      D++   AI  S  + R   
Sbjct: 105 LTEVLAKVNSVKYLIPKESNDPVITKSTGQTTAVMYIGFASDELGGSAI--SDYLTRVVQ 162

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
             +   +              +    DP+R+     + A ++      N           
Sbjct: 163 PILSTVDGVASADILGGQTFAMRLWLDPARMAGRGVSAADVAAAIQANNYQAAAGQTKGF 222

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           F+  +      + D                          +                 + 
Sbjct: 223 FIVSNVTTNSDLSDVH--------------------AFKRMVVKSKDGGLVRMEDIATVE 262

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                      +              + +    ++    L   +     P     V   +
Sbjct: 263 LAAQSTDSSVAMNGQQAIFIGVQATPEGNPLNIVKGVRALFPDIERNLPPTLKMKVAYDS 322

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T A    +V++V+F+ +   +  ++   +I L++I   +L+ ++G +
Sbjct: 323 TKFIQSSIDEVVHTLAEAVIIVIVVIFLFLASLRSVIIPVVTIPLSLIGVCSLMLVMGFS 382

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           + L ++  +VL IGL VD  I+V E I     + +    +  +G       +    IT  
Sbjct: 383 INLLTLLAMVLAIGLVVDDAIVVVENIHRHLEEGKPPVQASLIGAREIVGPVISMTITLA 442

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
                + F G   G   R FA T+  S+++S   A+++   M   ++ + +         
Sbjct: 443 AVYAPIGFLGGLTGTLFREFAFTLAGSVIVSGVIALTLSPMMCSILLTHVEQGWFARKVD 502

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISIL-FSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           S F  + D       R   +    ++    I  +        N  +  +    +     +
Sbjct: 503 SIFRQVTDWYGRNLDRTLDYRPVTALFAVVILGLVGFLYTHSNSELAPEEDQGILFSLTK 562

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               + +             F +F       V      G+      +L+   ++      
Sbjct: 563 APKYANIDYVNYYGDQLGKVFGSFPETDLTFVLNGTPVGNQGIAGMILKPWDERKRSSTA 622

Query: 648 LSTIQNTEIVGPKISRELIRK 668
           +       +     ++  +  
Sbjct: 623 MKQEVQNAVNAITGTQAFVFN 643



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 79/238 (33%), Gaps = 11/238 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       + +   + +S    +     F G +                  +   +++ +
Sbjct: 253 VRMEDIATVELAAQSTDSSVAMNGQQAIFIGVQATPEGNPLNIV--KGVRALFPDIERNL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
              + +    ++         E++      VII  + + +++         +  + T+ L
Sbjct: 311 PPTLKMKVAYDSTKFIQSSIDEVVHTLAEAVIIVIVVIFLFLA---SLRSVIIPVVTIPL 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +        + G   NL  + A++  IG  V+D +VV + +    +             
Sbjct: 368 SLIGVCSLMLVMGFSINLLTLLAMVLAIGLVVDDAIVVVENIH---RHLEEGKPPVQASL 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
               E +G  +  ++       P+   G   G++   FA  +A  ++V+   ++ ++ 
Sbjct: 425 IGAREIVGPVISMTITLAAVYAPIGFLGGLTGTLFREFAFTLAGSVIVSGVIALTLSP 482



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 59/155 (38%), Gaps = 6/155 (3%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            V    + I + + +  +F+     L  + ++ + I+  L          N+     +LTL
Sbjct: 848  VAFGFALIIIFLVLAAQFESIRDPLVILISVPMAISGALVPLFFGVATINIYTQVGLLTL 907

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG      +++ +   +        +  R  I+K+    L   + T+ A    +LP+   
Sbjct: 908  IGLISKHGILMVEFANE--LQLNEGLDRRAAIEKAARVRLRPILMTTAAMVTGLLPLLTA 965

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
               G +   S  + +  G+ +    ++F+   + +
Sbjct: 966  SGAGAASRFSIGLVVVAGMTIGTIFTLFVLPAVYV 1000


>gi|307298263|ref|ZP_07578067.1| protein-export membrane protein SecD [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916349|gb|EFN46732.1| protein-export membrane protein SecD [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 515

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 98/250 (39%), Gaps = 4/250 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            + + +            ++ + D        +           G +  +      +   
Sbjct: 258 DITSVKSTYADTDMKKRLAIVLDDRVIIAPLVQSQISDGNAVIEGLNSIEEAKEVSILVG 317

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +       N  ++ P + R++I   +   +   + ++IY+ + +K    + A   L+
Sbjct: 318 SGNLPVDLASFNKRVLSPTLGRDIINSSLWAGVAGIVIIMIYMVVFYK-KMGIVADIALL 376

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            +     G  +L G    L  +A ++  IG +V+  V++++R+++ ++L     +  + I
Sbjct: 377 YNAVLLFGMISLTGSILTLPGIAGIVLTIGMTVDGNVLIFERIKEELRL---GKTPENSI 433

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           D + ++ +      ++   ++ L +  +G   +  FA+ +  G+V A  ++I ++  +L 
Sbjct: 434 DSAFSKVVWTIFDANLTTILAGLVLFYFGTGTVKGFAVTLIIGVVGAMFTNIVVSRTVLT 493

Query: 822 FIYDWRAKNA 831
            +      + 
Sbjct: 494 GMAGSLKPHR 503



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 133/525 (25%), Positives = 222/525 (42%), Gaps = 61/525 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           MR N   +I+  ++    LL  L           F   +  N I LGLD++GG+ L  + 
Sbjct: 15  MRANQKRLIVTVVVFVAALLPLLIPHGSAPAGSSFIDKLAAN-IKLGLDIKGGALLEYQM 73

Query: 60  -VDEDD-FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-----------KITLSFADSR 106
             D  D  +N       + LR+ L   G    ++ ++             ++ +      
Sbjct: 74  LTDVSDQEMNALADRVIEVLRARLDAAGFTEATVEKVTTGISFGEDIPPVRVRVQIPGIT 133

Query: 107 FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
                   V    +   + +       +  + +   I   +S     + +  A       
Sbjct: 134 DVSRAESLVGKTGRLYFADVLA-----IETSVSTPSIPAGMSLEISRRKLQGA------- 181

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
               + ++   E       +       P     S   +L G+    +   V         
Sbjct: 182 EPYWVKELHYGEYVGGVQNNTW-YFISPKVSIGSSYAELDGSVVTDAKPLVNNQPRPGQG 240

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
            F V     S+G                                                
Sbjct: 241 RFMVSLKFSSEGA---------------------------------KTFRDITSVKSTYA 267

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
             ++ K LA+VLD RV+ AP++   I  G A I G  +IE A  ++ ++ +G+LP+ L  
Sbjct: 268 DTDMKKRLAIVLDDRVIIAPLVQSQISDGNAVIEGLNSIEEAKEVSILVGSGNLPVDLAS 327

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
             +R +   LG D I     A VAG+V+I+++M+V Y K G+VAD ++  N +L   ++S
Sbjct: 328 FNKRVLSPTLGRDIINSSLWAGVAGIVIIMIYMVVFYKKMGIVADIALLYNAVLLFGMIS 387

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
           L G+ LTLP IAGIVL IG+ VD N+L+ ERI+EE R  ++   S+D  FS+   TIFD+
Sbjct: 388 LTGSILTLPGIAGIVLTIGMTVDGNVLIFERIKEELRLGKTPENSIDSAFSKVVWTIFDA 447

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           N+T ++A +VLF+FG G V+GFA+T+ + ++ +MFT I + R ++
Sbjct: 448 NLTTILAGLVLFYFGTGTVKGFAVTLIIGVVGAMFTNIVVSRTVL 492


>gi|161520857|ref|YP_001584284.1| acriflavin resistance protein [Burkholderia multivorans ATCC 17616]
 gi|189352960|ref|YP_001948587.1| putative cation/multidrug efflux pump [Burkholderia multivorans
           ATCC 17616]
 gi|160344907|gb|ABX17992.1| acriflavin resistance protein [Burkholderia multivorans ATCC 17616]
 gi|189336982|dbj|BAG46051.1| putative cation/multidrug efflux pump [Burkholderia multivorans
           ATCC 17616]
          Length = 1055

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 71/636 (11%), Positives = 167/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  PS                  ++   
Sbjct: 8   LRRPYTFIVMAIMIVL-----ATPLALMRTPVDVLPSINIPV-----------VSVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
             + F    +      +        +        +       + +        +    + 
Sbjct: 50  SYNGFSAKEMSDRITSVHERSLTTTVNNIQHIESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +       +     Q+ 
Sbjct: 110 VASAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LGDIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  LR    T A +       N +       +     
Sbjct: 168 TIPGAQIPFPYGGRTRVVAIDIDPQALRAKGLTPADVVNAVNAQNLTLPTGTAKMGPTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +I+                     +    +     +     ++    +
Sbjct: 228 RIDTNASADTIADIT--------------------HLPIQTVNGATTYLGEVASVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLVSIQKSGDASTLKVVSDLKALLPRVEPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L +LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIVLSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I         +  ++  G        F S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTDLHDAILEGAGEIAVPAFVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + + R ++          RF 
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPQQASVGPERATGRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +       F R R W + +  +  +              +       LG       D  
Sbjct: 508 RLHRAFNAAFERLRAWYIVLLSMLLVRRRFYASCFLGFCVLSTGLVFVLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++         P D 
Sbjct: 568 NIRLHMRAPTGYRIEETARLADRVERAVRDIVPPDE 603



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 89/278 (32%), Gaps = 5/278 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              +         +   + T+     I     + +  +      L  V S  +       
Sbjct: 212 NLTLPTGTAKMGPTEYRIDTNASADTIADITHLPIQTVNGATTYLGEVASVRDGFSPQTN 271

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +        +   +     ++     L+ +  ++   +P                  +
Sbjct: 272 VVRQNGQRGVLVSIQKSGDASTLKVVSDLKALLPRVEPTLPEGLTITPLFDQSVFVNAAV 331

Query: 667 RKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           +  I   +I + +  ++ +     W   L    ++ L I  +L   +  G   N+  +  
Sbjct: 332 QGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIVLSALGETINIMTLGG 391

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  V+D  V  + + +++ L        D I +   E    +  +++   I  +P
Sbjct: 392 LALAVGILVDDATVTIENIERHLHL---GTDLHDAILEGAGEIAVPAFVSTLCICIVFVP 448

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           M    G     F +P+A  +V A  +S  ++  ++  +
Sbjct: 449 MFFLTGVARYLF-VPLAEAVVFAMLASYVLSRTLVPTL 485



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  I+ +   +        + G   ++ A+   +  +G
Sbjct: 890  VAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 949

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +              ++    +   + T++A  I ++PMA+   
Sbjct: 950  VATANSILVVSFARQRLAA---GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1006

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1007 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1035


>gi|313895513|ref|ZP_07829069.1| export membrane protein SecD [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975639|gb|EFR41098.1| export membrane protein SecD [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 413

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 145/398 (36%), Positives = 230/398 (57%), Gaps = 27/398 (6%)

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +      +  L       + +        QV   A+ + + I+ +R++ +G++E  I
Sbjct: 17  AFVQPLASSIRQGLDLQGGTHVVLEAVDTEQAQVNDDAMNRVVAIMEKRVNSLGLTEPII 76

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           QR G  R++I+LPG +DP    + +G TA + F                           
Sbjct: 77  QREGERRVIIELPGIKDPDAAIRTIGKTAMLEFRDED----------------------- 113

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++G  L  A A+ +P+T + VV++ F + GA++F ++T  N+G+ +A++LDG 
Sbjct: 114 ---GNTVLTGTDLKDAQASTNPQTGQNVVNLEFSDEGAQKFADLTMRNVGRTIAILLDGE 170

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           VLTAP + + I  G+A+I+G  T+E A  LA +LR+G+LP+K+ I+E R VG  LG DS 
Sbjct: 171 VLTAPNVREPILGGRAEITGQKTLEEAQNLAVVLRSGALPVKVEIIETRTVGPTLGQDSK 230

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K   A   GL  +VLFM++ Y   G +AD ++    IL L +L L+ ATLTLP +AGI+
Sbjct: 231 DKSEFAFAVGLGAVVLFMVLFYHLSGFIADVALMAYTILLLGILYLMDATLTLPGVAGII 290

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IG+AVD+N+L+ E  +EE +    S+  ++D GF RA++TIFDSN+T LIA  VLFF 
Sbjct: 291 LSIGMAVDANVLIFEHFKEEYQVQHKSLRLAMDAGFKRAFTTIFDSNVTTLIAAGVLFFL 350

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           G G +RGFAIT+G+  ++SMFTAI++ + ++  ++  K
Sbjct: 351 GTGTIRGFAITLGVGTILSMFTAITLTQYLLKLMVNAK 388



 Score =  119 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 67/166 (40%), Gaps = 3/166 (1%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++   K      +   A+++++ + +       A   L+      LG   L    
Sbjct: 222 GPTLGQDSKDKSEFAFAVGLGAVVLFMVLFYHLS-GFIADVALMAYTILLLGILYLMDAT 280

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  VA ++  IG +V+  V++++  ++  ++     S R  +D            +++
Sbjct: 281 LTLPGVAGIILSIGMAVDANVLIFEHFKEEYQVQHK--SLRLAMDAGFKRAFTTIFDSNV 338

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              I+   +   G   I  FAI +  G +++  ++I +   +L  +
Sbjct: 339 TTLIAAGVLFFLGTGTIRGFAITLGVGTILSMFTAITLTQYLLKLM 384



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 80/256 (31%), Gaps = 28/256 (10%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-VDED--DF 65
           ++ ++   IG+  A    L  S             I  GLDL+GG+H+VLE VD +    
Sbjct: 4   LVIAVAVIIGVFFAFVQPLASS-------------IRQGLDLQGGTHVVLEAVDTEQAQV 50

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNS 124
            +  +      +   +   G+    +++    ++ +     +  +     +         
Sbjct: 51  NDDAMNRVVAIMEKRVNSLGLTEPIIQREGERRVIIELPGIKDPDAAIRTIGKTAMLEFR 110

Query: 125 KLN----------VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID-Q 173
             +           D + +    T +  +++  S     +     +      I   +D +
Sbjct: 111 DEDGNTVLTGTDLKDAQASTNPQTGQNVVNLEFSDEGAQKFADLTMRNVGRTIAILLDGE 170

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +  + +  + +   R  I      + ++   ++  +  +     +      G   G    
Sbjct: 171 VLTAPNVREPILGGRAEITGQKTLEEAQNLAVVLRSGALPVKVEIIETRTVGPTLGQDSK 230

Query: 234 RDSDGNQYLVEDKVEI 249
             S+    +    V +
Sbjct: 231 DKSEFAFAVGLGAVVL 246


>gi|289669985|ref|ZP_06491060.1| acriflavin resistance protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 1042

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/544 (11%), Positives = 146/544 (26%), Gaps = 38/544 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVASLPNIQIPIIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + L F  SR  ++ A  +   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSLVVLVFQSSRKIDSAAQDIQTAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      D     A E           ++       
Sbjct: 115 SQSDLPSGLGTPMYSKANPNDDPVIAIALTSD--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +     
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDNLRNAVRAANVTSPTGFLSDGNTTMAIIAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVSKAAD-------------------FAQLAIATQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR+   P                S   
Sbjct: 274 WFNGKRAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQVTLMISLAMVILTMALFLRRLAPTLIAAVAVPLSLAGSALVMYMLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD+ I+V E +     +  S   +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDNAIVVIENVMRHLDEGMSRMDAALAGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +     +       +    + D +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSAHAEQEKPSRFGAWLDRMHDRM 513

Query: 539 AIQF 542
              +
Sbjct: 514 LRAY 517



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 80/196 (40%), Gaps = 10/196 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               +V   + +  + + P +T+       P I   L    +  ++IS   +++ + +  
Sbjct: 295 ETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHEVQVT-LMISLAMVILTMALFL 353

Query: 689 KWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +     L A   + L +  +     + G   N  ++ A++  IG+ V++ +VV + +   
Sbjct: 354 RRLAPTLIAAVAVPLSLAGSALVMYMLGFTLNNLSLLALVIAIGFVVDNAIVVIENV--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAF 803
           M+     +S  D       E +G ++ +  A+ ++V    ++   +I      F + +  
Sbjct: 411 MRHLDEGMSRMDAALAGARE-IGFTIVSITASLVAVFIPMLFASGMIGAFFREFTVTLVA 469

Query: 804 GIVVAASSSIFIAAPI 819
            IVV+   S+ +   +
Sbjct: 470 AIVVSMLVSLTLTPAL 485


>gi|317014028|gb|ADU81464.1| putative efflux transporter [Helicobacter pylori Gambia94/24]
          Length = 1028

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSVNKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILVNANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKRIQAISPSY-EIRPFLDTTTFIRSSIEDVKFDLILG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRSGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  K  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPKHSRFYVWSEPFFKALESRYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKLGMEFM 540



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   V 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKLKR 1019



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K+I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKRI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       ++ + +A+L+           L +  ++ +
Sbjct: 300 QAISPSYEIRPFLDTTTFIRSSIEDVKFDLILGAILAVLVVFAFLRSGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|254563244|ref|YP_003070339.1| efflux transporter, AcrB/AcrD/AcrF family protein [Methylobacterium
           extorquens DM4]
 gi|254270522|emb|CAX26525.1| efflux transporter, AcrB/AcrD/AcrF family protein [Methylobacterium
           extorquens DM4]
          Length = 1046

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 63/519 (12%), Positives = 154/519 (29%), Gaps = 35/519 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                + RFP+                  +         +   +  + ++  + +K    
Sbjct: 31  FRALPITRFPNIDIPIV---------SVTVTQSGAAPSELQTQVTKWVEDSVAGVKGVKH 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            + ++ +  +  T+ F     ++   + V   +  +   L     + ++       + I+
Sbjct: 82  ILSTISEGASITTIEFRLEVNQDRAVNDVKDAISKIRINLPRTIDEPIISRVEIAGLPIM 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   +   +     + S  +      Q+   +          +  ++     P RL  L 
Sbjct: 142 IYGASAPAMTPE--DLSWFVDDVVARQLQGVKGVGGVERLGGVAREIRVTLKPDRLLALG 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A ++    L +    G    +     S            +    +            
Sbjct: 200 ITAADVNRQLRLTSADMAGGRGELAGGEQSIRTLGASASLETLGATSIVVP--------- 250

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                      G R+       ++                 +     S     S      
Sbjct: 251 -----------GGRKVRLDELASLMDAAEEPRTFARFNGEPVVGFAISRAMGASDAEVAV 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L A +  ++ ++++   V    G+           A L +IV+F+ +   + 
Sbjct: 300 AVAKRIEDLHAENPGVRFDLIDTSVVNTI-GNYHSAMMGLLEGAALAVIVVFLFLRDWRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+A  ++ L+V+ T  ++S LG +L   S+  I L  G+ VD  I+  E I    R  +
Sbjct: 359 TLIAAVALPLSVLPTFWVMSALGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHMRMGK 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTA 503
           S + +           +     T +     + F     G   + F +T+  ++ +S+  A
Sbjct: 419 SAYRAALEAADEIGLAVIAITATIIAIFAPVSFMPGIAGQYFKQFGLTIAAAVFVSLLVA 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             I   +  + +R           + R +      +++ 
Sbjct: 479 RLITPLLAAYFLRDHGPDHEREGLVMRAYTRLVAWSVRH 517



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 82/224 (36%), Gaps = 7/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V ++     S A   ++E V            +   +    ++  E+     + +
Sbjct: 789  DRTVRVAVEGDLQGSDALGSIIEQVMALPAATNLPEGVTIRQTGDAEVMGEVFEGFALAM 848

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L I   +    +F +  ++  V  +L L+G 
Sbjct: 849  GAGLMMVFGVLVLLFGNFLQPLTILFSLPLSIGGAILGLLVFHMPISMPVVIGILMLMGV 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAIEEMA---RGVDRVTAIVDAGRKRARPIVMTTIAMAAGMVPSALALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG      A+ +  G++V+   S+     I L + D      R+
Sbjct: 966  GGEFRAPMAVAVIGGLIVSTGLSLVFVPAIFLLVDDLSRLFVRL 1009



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 75/252 (29%), Gaps = 6/252 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G   + V   R V L  + S +++ +      +            +            + 
Sbjct: 243 GATSIVVPGGRKVRLDELASLMDAAEEPRTFARFNGEPVVGFAISRAMGASDAEVAVAVA 302

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
              + +    P       +              +  +  +A+A+++       W   L A
Sbjct: 303 KRIEDLHAENPGVRFDLIDTSVVNTIGNYHSAMMGLLEGAALAVIVVFLFLRDWRATLIA 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L +  T    +  G   N  ++ A+  + G  V+D +V  + +   ++      S
Sbjct: 363 AVALPLSVLPTFWVMSALGFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHMRMGKS 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                 ++ +E     +  +        P++      G     F + +A  + V+   + 
Sbjct: 420 AYRAALEAADEIGLAVIAITATIIAIFAPVSFMPGIAGQYFKQFGLTIAAAVFVSLLVAR 479

Query: 814 FIAAPILLFIYD 825
            I   +  +   
Sbjct: 480 LITPLLAAYFLR 491


>gi|121611736|ref|YP_999543.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
 gi|121556376|gb|ABM60525.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
          Length = 1083

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 76/665 (11%), Positives = 173/665 (26%), Gaps = 89/665 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ ++   GLL           +  FP       +           + L   
Sbjct: 9   RNPIPALMLFVLLGFGGLLA-----FDTMKVQNFPDIDLPTIV---------VAVALPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + L+        ++     I   F   +  +   D V   + G
Sbjct: 55  APAQLENDVVRKIENSIATLQGLKHIYSRVQDGSASIRAEFRLDKPTQEALDDVRSAVAG 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISI------------------------------------ 145
           +   L  D ++  +         +                                    
Sbjct: 115 IRGDLPGDMREPSVTKMDLAGQPVLAFTLVSRHGSDVVGCAQPSERSARRIAQPIPSVLA 174

Query: 146 ----------------VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                           ++    +          S  +      ++              +
Sbjct: 175 SDATPRCASMASADRQMIGDATLASARRDDEALSWFVDDTVTRKLLAVRGVGAVNRVGGV 234

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             QL    +P +L+ L  + A +S    L      G    +            V    E+
Sbjct: 235 DRQLQVALEPVKLQALSASAADLSRQLRLVQTESAGGRTDLGGSEQPVRTLATVRSAQEL 294

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           +                     ++      R         +   +A      +L    + 
Sbjct: 295 AA--------------------LTLALPDGRAVRLDQLATVSDTIAEPRALALLDGKPVV 334

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
               +     S              LRA              V                 
Sbjct: 335 GFEVARSRGASEVEVGAAVQAALQELRAQYP-DLEITEAFNFVLPVQQEYDGSMHLLYEG 393

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+++ +   +  LV+  ++ L+VI     + LLG ++ + ++  + L +G+ VD
Sbjct: 394 ALLAVLVVWLFLRDWRATLVSAVALPLSVIPAFVGMLLLGFSINVVTLLALSLVVGILVD 453

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
             I+  E I    R  ++ + +           +  +  T +   +   F  G   + F 
Sbjct: 454 DAIVEVENIVRHLRMGKTPYQAALQAADEIGLAVVATTFTLIAVFLPTAFMSGIPGKFFK 513

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
              G +  +++F ++ + R +   +  Y         P  R+       A   +R R+  
Sbjct: 514 Q-FGWTAALAVFASLVVARLLTPMMAAYLLKPIAGPQPDPRWMRCYLRCAAWCIRHRWIT 572

Query: 550 VG-ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
               S  F      +          D     Q+ +       L+  R++ E  ++     
Sbjct: 573 FVATSAFFVGSLALIPLLPTGFIPPDDNAQTQVRLELPPGATLAQTRASAEDARLRIARL 632

Query: 609 QNFDG 613
            + + 
Sbjct: 633 DHVES 637



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 52/154 (33%), Gaps = 6/154 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +A+L+       W   L +   L L +        L G   N+  + A+  ++G  V
Sbjct: 393 GALLAVLVVWLFLRDWRATLVSAVALPLSVIPAFVGMLLLGFSINVVTLLALSLVVGILV 452

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +V  + +   ++      +      ++ +E     V T+       LP A   G   
Sbjct: 453 DDAIVEVENI---VRHLRMGKTPYQAALQAADEIGLAVVATTFTLIAVFLPTAFMSGIPG 509

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                F    A  +  +   +  +   +  ++  
Sbjct: 510 KFFKQFGWTAALAVFASLVVARLLTPMMAAYLLK 543



 Score = 56.6 bits (134), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 70/177 (39%), Gaps = 3/177 (1%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             V + V+           +   EI   ++  EL     + ++   + + I + + FK + 
Sbjct: 863  DVSKAVQALPAIRNLPPGVHQVEIGDAEVMGELFASFGLAMLTGVLCIYIVLVLLFKDFL 922

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              +  +  L L +        +    F++ ++  ++ L+G +  + +++ +     +   
Sbjct: 923  HPVTILAALPLSLGGAFVGLLIAHKSFSMPSLIGLVMLMGIATKNSILLVE--YAILARR 980

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               ++    +  + ++     + T++A    +LP+A+  G    SF  PMA  ++  
Sbjct: 981  AHGMAREQALIDACHKRARPIIMTTLAMGAGMLPIALGLGVADPSFRSPMAVAVIGG 1037


>gi|300115481|ref|YP_003762056.1| acriflavin resistance protein [Nitrosococcus watsonii C-113]
 gi|299541418|gb|ADJ29735.1| acriflavin resistance protein [Nitrosococcus watsonii C-113]
          Length = 1030

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/682 (10%), Positives = 180/682 (26%), Gaps = 50/682 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  IGL       + Q                                 
Sbjct: 10  RPVLASVVSLLILLIGLRSLALLEVRQYPETENTVVTVTTA--------------YPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +NGF+     +  +  K     V +  Q  + I      +        ++   +   
Sbjct: 56  SELINGFITTPLQQAIAEAKGIDYLVATSTQGHSVIEAHMVLNYDSNAAVAEIQAKVASQ 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    +  ++ +TT    +++      ++++    + +  ++R    +I       +
Sbjct: 116 RNVLPEASEDPVIDSTTGDPTALMYMAFYSEEMLPS--QITDYLLRVVRPKIQAVPGVSK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    +P R+  L  T   +    +  N           ++         
Sbjct: 174 AQLIGNKTFAMRIWLNPRRMAALGVTAGDIREVLLKNNYLASVGHTKGAYVAIDLSATTD 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  + +                     +++   E            +             
Sbjct: 234 ISREEDF--------------------LNLVVREADGALVRLRDVADPKLGAEDYDSTNW 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +     E    L   +R          +          +    
Sbjct: 274 YNGKPAIFIGIEQAPGANPLDIAEHLHGLMPEIRRQLPAGLNGYIVYDASAYIEDAIKEV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T A    +V+IV+F+ +   +  LV   ++ L++I    L+  LG +L L ++  +VL
Sbjct: 334 FRTLAEAVIIVIIVIFLFLGSLRAALVPAVAVPLSLIGAAFLMLALGFSLNLLTLLAMVL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E I        S F +   G       I     T +     + F G 
Sbjct: 394 AIGLVVDDAIIVVENIHRHLEYGGSRFQAAIQGARELGLPIIAMTTTLVAVYAPIGFMGG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FA T+  ++L+S   A+++   +           + +     ++        
Sbjct: 454 LVGTLFTEFAFTLAGAVLVSGVVALTLSPML----SSKVLRPASEAGRFEQWVERFFTRL 509

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
            ++          S+   +    ++F       +     +        P +   +     
Sbjct: 510 AEYYSRFLRYTLDSLPVVMVFAGVMFCSIYFMYVTSHNELA-------PTEDQSILFFQA 562

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +         +    +  +      P    +   + +              + +      
Sbjct: 563 TAPQTATIDYDEAYSRQIIEIFATFPQYQESFLLLGQGSDPSTVFGGFKMPVPSQRERSQ 622

Query: 660 KISRELIRKGIVGVIISAIAML 681
              +  +++ +  V    IA+ 
Sbjct: 623 MEIQPELQQKLQAVAGFQIAIF 644



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 96/290 (33%), Gaps = 11/290 (3%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            +    ++      +            +      +   A   + L+ + S  E+++     
Sbjct: 733  YINWFNLEGRSYKVIPQVARRYRLDQEMLENYYIRTGAGELIPLATLVSFEEAVEPSKRV 792

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                         +        A   + E  ++             +     + S  ++ 
Sbjct: 793  QFQQLNSITVQGVMAPGVAVGEALAYLEEQARETFPSDFSWDYAGESRQYTQQGSALMVT 852

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                    S + + + +  +F+ W   +  + ++ + I   L F  L     N+     +
Sbjct: 853  -----FFFSLLVIYLVLAAQFESWRDPIIILMSVPMSIAGALVFLTLGFATVNIYTQVGL 907

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG    + +++ +    N       +  R+ ++K+ +  L   + T+++  ++++P+
Sbjct: 908  ITLIGLIAKNGILIVE--FANQLQVQEGLGKREAVEKAASIRLRPILMTTVSMIVAMIPL 965

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             +    G        + +A G+ +    ++F+   + L I     +   I
Sbjct: 966  LMASGPGAVSRFDIGLVVASGLGIGTLFTLFVVPAVYLLIARAHREEKEI 1015



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 79/240 (32%), Gaps = 11/240 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V      D  +   + +S    +     F G +                  ++  +++++
Sbjct: 253 VRLRDVADPKLGAEDYDSTNWYNGKPAIFIGIEQAPGANPLDIA--EHLHGLMPEIRRQL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
              +    + +         +E+ R     VII  I + +++        AL     + L
Sbjct: 311 PAGLNGYIVYDASAYIEDAIKEVFRTLAEAVIIVIIVIFLFLG---SLRAALVPAVAVPL 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +          G   NL  + A++  IG  V+D ++V + +    +      S      
Sbjct: 368 SLIGAAFLMLALGFSLNLLTLLAMVLAIGLVVDDAIIVVENIH---RHLEYGGSRFQAAI 424

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +   E     +  +        P+   G   G++   FA  +A  ++V+   ++ ++  +
Sbjct: 425 QGARELGLPIIAMTTTLVAVYAPIGFMGGLVGTLFTEFAFTLAGAVLVSGVVALTLSPML 484


>gi|315586708|gb|ADU41089.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori 35A]
          Length = 1026

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/568 (11%), Positives = 156/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +   +       +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYTKNTIKPMLQKIDGVGGVQLNGYR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSLLINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++V+ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISVMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKLGMEFM 540



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 66/167 (39%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ +  + + + + +   ++        + T+ L  +       L     ++ ++  ++ 
Sbjct: 854  LIALATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLIL 913

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+
Sbjct: 914  LIGMVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLAL 970

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 971  ASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1017



 Score = 39.7 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SVMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|208434528|ref|YP_002266194.1| cytoplasmic pump protein of the hefABC efflux system [Helicobacter
           pylori G27]
 gi|208432457|gb|ACI27328.1| cytoplasmic pump protein of the hefABC efflux system [Helicobacter
           pylori G27]
          Length = 1028

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 65/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGHIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTSYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIISIAVVLVFVGSLFVASKLGMDFM 540



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   V 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 40.1 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPSYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|219684783|ref|ZP_03539725.1| acriflavine resistance protein [Borrelia garinii PBr]
 gi|219671728|gb|EED28783.1| acriflavine resistance protein [Borrelia garinii PBr]
          Length = 1070

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 94/641 (14%), Positives = 202/641 (31%), Gaps = 34/641 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H       
Sbjct: 9   KPITMLILFSLLMMISLYT-----FSRLKVDLLPGIDIP---------QISIHTAYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K       +  +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSTSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + E+I      +   +    
Sbjct: 115 KSLLPSKSQSPRIFRYNLKNIPVMEITINSVRPVSELKRYADEVI---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSRKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NIIENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  V++SG   +          +K     S     A         NI      + +   
Sbjct: 222 LEYLVQVSGKFKSIEEIGNVVIAYKIPDISSGINSSAIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVMREIEKLKLSMPKDMKLEIASDSTNFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + +ILT  L+  L  ++ + S+AG+ L
Sbjct: 342 VNSAYFGAILAIFVIFFFLRSFRATIIIGISIPIAIILTFCLMYFLNISINIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S +T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTLTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + F+ T+ +S+ +S+  AI +V  +    +        +IN      +   
Sbjct: 462 ELGVYGDFFKDFSFTIVISLGVSLLVAIFLVPVLSSHYVGLYTSFQKNINNAFIRRIDTF 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
             +I +     +   ++I+ +   I  L       G  F G   L V        + +  
Sbjct: 522 FASIYYFLEFLYINLLNIVLNHKLIFGLIVFFSFIGSLFLGL-LLDVTTFARGKENSIVI 580

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           NL      ++ +  F   K   +      G     + +   
Sbjct: 581 NLNFPNKTNLEYAKFYSNKFLEIVKSEAKGYKSIISTLNAD 621



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ + +  + +   +   +   + L      +   T+V   V   I   VP       +
Sbjct: 798  SSIATFEKTNKAESIYRENQALTIYLNAGISPNDNLTQVTAKVIDFINNKVPHKEGTVLK 857

Query: 656  IVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            + G       I      +I ++ + +   +  +F+ +      I T+ L     +    L
Sbjct: 858  VEGEYDEFSNIMNQFKIIITMAIVVVFGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFL 917

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++ A   +L L+G  VN  +V+ D       L       R+ I +S    L   +
Sbjct: 918  AGEKLSIFAAIGMLMLVGVVVNTGIVLID---YTGLLIKRGFGLRESIIESCRSRLRPIL 974

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +S+ + I ++PMA     G  ++   A     G+  +   ++F    +     +
Sbjct: 975  MSSLTSIIGLIPMAFSSGSGNELLKPIAFTFIGGMTASTFLTLFFIPMLFEVFSN 1029



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/245 (10%), Positives = 71/245 (28%), Gaps = 14/245 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +      ++     +L      +             V+ +           V+  ++K
Sbjct: 259 IEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVMREIEK 313

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               +     ++        I   +          + +A+ +  +    +   +    ++
Sbjct: 314 LKLSMPKDMKLEIASDSTNFIKASISTVVNSAYFGAILAIFVIFFFLRSFRATIIIGISI 373

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + I  T        I  N+ ++A +   IG  V+  +VV D +    K           
Sbjct: 374 PIAIILTFCLMYFLNISINIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLISS 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSIF 814
                 E +     +++ +     P  ++       G     F+  +   + V+   +IF
Sbjct: 431 SILGAQEMMLPITSSTLTSICVFGPFLIFKSELGVYGDFFKDFSFTIVISLGVSLLVAIF 490

Query: 815 IAAPI 819
           +   +
Sbjct: 491 LVPVL 495


>gi|113953790|ref|YP_731954.1| RND multidrug efflux transporter [Synechococcus sp. CC9311]
 gi|113881141|gb|ABI46099.1| RND multidrug efflux transporter [Synechococcus sp. CC9311]
          Length = 1105

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 78/547 (14%), Positives = 156/547 (28%), Gaps = 29/547 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +    I   GL+           ++  P   P  +I +  +  GG        
Sbjct: 25  KRPVLTSVCSIAIFIAGLVFV-----QTLPIEFVPDVAPS-QIRISANYPGG-------- 70

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++L S        + S     + I +  A     +         +Q 
Sbjct: 71  NASIVEKSVTDQLEDLLSDTPGVDYLISSSTSNSSTIQMYLAPETSADTAMLDAQNRIQK 130

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    +   +  +   + ++       DQ    +   +  I      QI +     
Sbjct: 131 GLQNLPQVTQDQGVSVSQSTDTTLSGYMITSDQGQYDSAYLATLIEDNLKKQIQLINGVG 190

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     +     DP  L+    T  ++S   +  N+       G  +L D     Y
Sbjct: 191 TVTIY-PADSRFQVFLDPDLLKSYDLTAKEVSQKIISQNSPSSAGSVGAPYLSDDASYSY 249

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                 +     +                      +          +
Sbjct: 250 PVL-----------VKDGGYIQTVEEFENLAVRTSPSGALIRLKDIGKVEYISDPTFSLK 298

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L     +    + K+  +          +    +  + P    +  +      L S   
Sbjct: 299 TLNGYPASYININQKSGSNAVQVARGIERVVDDFKKIAPPGIEVVQMQNQKSFILDSIEN 358

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   LVL+ L + +   +  L+   +I + ++ T   L L G TL   ++ G+V
Sbjct: 359 VTDALGLAVILVLVTLVLFLKKWRTVLIPALAIPVAIVGTFLFLGLFGFTLNFLTLTGLV 418

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  ILV E + +      S   +     +     +  +++  +   + +    
Sbjct: 419 LATGLVVDDAILVVESVAKNMEAGMSPKQAAISTMNELSGAVVSTSLVLITLFLPVTLVA 478

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  +I IS F A++    M   I+     K+          LI   +
Sbjct: 479 SSVGKIYQQFAVTIIFAIAISTFNALTFSPMMAGLILLPGDQKTASKWVTGIGGLIVGAL 538

Query: 539 AIQFMRA 545
              F RA
Sbjct: 539 FGMFTRA 545



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           KW   L     + + I  T  F  LFG   N   +  ++   G  V+D ++V + +    
Sbjct: 380 KWRTVLIPALAIPVAIVGTFLFLGLFGFTLNFLTLTGLVLATGLVVDDAILVVESV---A 436

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTS--MAAFISVLPMAVWGGSVI-GSFAIPMAFGI 805
           K     +S +     ++NE  G  V TS  +      + +       I   FA+ + F I
Sbjct: 437 KNMEAGMSPKQAAISTMNELSGAVVSTSLVLITLFLPVTLVASSVGKIYQQFAVTIIFAI 496

Query: 806 VVAASSSIFIAA 817
            ++  +++  + 
Sbjct: 497 AISTFNALTFSP 508



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/255 (15%), Positives = 92/255 (36%), Gaps = 7/255 (2%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              V +    ++  +R   E+  I      +        VR   QP    +Q +V+  ++K
Sbjct: 846  YSVKSETTGEMVKIRQFAEAELISAPPSIDHFSFNR-SVRFSIQPKAGFSQGQVISRLEK 904

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               E    +     + +         +  ++  +      LI       +  +   + T+
Sbjct: 905  IFAESDFKNLDYEFDGLARTQVESGGQILMLFALAGLAVFLILSATYESYITSTTILLTV 964

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L I  +L F  +  ++ N+ +   +L LIG +  + ++V +      +     +     
Sbjct: 965  PLAILGSLVFVKMRSMDINIFSQVGLLMLIGLAAKNAILVVEFA---DQGMANGLEAAQA 1021

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
              ++    L   + TS+A+    LP+ V    G +   S    +  G++V    S+ +  
Sbjct: 1022 ALEAAKSRLRPILMTSIASLAGFLPLVVARNAGANAQQSIGTVVFGGLLVGTILSLGVVP 1081

Query: 818  PILLFIYDWRAKNAR 832
             + +FI    A+  +
Sbjct: 1082 SVYVFIKGLEARWFK 1096


>gi|111114963|ref|YP_709581.1| acriflavine resistance protein [Borrelia afzelii PKo]
 gi|110890237|gb|ABH01405.1| acriflavine resistance protein [Borrelia afzelii PKo]
          Length = 1070

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 90/604 (14%), Positives = 194/604 (32%), Gaps = 33/604 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   + V     
Sbjct: 9   KPITMLILFSLLMMISLYT-----FSRLKVDLLPGIDIP---------QISINTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S LK          +  + ++L F      + + +++   L+ V
Sbjct: 55  PKEVEESVSRVLESGLSSLKNLKNIYSISSKENSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSRAQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +K+S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSKVSSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  V++SG   +          +K   + S   +           NI      + +   
Sbjct: 222 LEYLVQVSGKFKSIEEIGNVVIAYKMPDNSSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSITVSNVVTGEIEKLKLSMPKDMRLEIASDSTNFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+  +  +L + S+AG+ L
Sbjct: 342 VSSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFCLMYFVNISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMMPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + F+ T+ +S+ +S+  AI +V  +    +        +I       +   
Sbjct: 462 ELGVYGDFFKDFSFTIVISLGVSLLVAIFLVPVLSSHYVGLYTSFQKNIKSTFIRKIDAF 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
             +I +     +   ++I+ +   I  L       G  F G +      +R  + S+V +
Sbjct: 522 FASIYYFLEFLYINLLNIVLNHKLIFGLIVFFSFIGSLFLGLLLDVTTFDRGKENSIVIN 581

Query: 597 NLES 600
               
Sbjct: 582 LNFP 585



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 86/235 (36%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ + +  + +   +   +   + L      +   T+V   V   I   VP       +
Sbjct: 798  SSIATFEKTNKAESIYRENQALTIYLNAGISPNDNLTQVTAKVVDFINNKVPHKEGTVLK 857

Query: 656  IVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            + G       I     + ++++ + +   +  +F+ +      I T+ L     +    L
Sbjct: 858  VEGEYNEFSNIMNQFKIIIMMAIVVVFGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFL 917

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++ A   +L L+G  VN  +V+ D       L       R+ I +S        +
Sbjct: 918  AGEKLSIFAAIGMLMLVGVVVNTGIVLVD---YTGLLIKRGFGLREAIVESCRSRFRPIL 974

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +S+ + I ++PMA     G  ++   A     G+  +   ++F    +     +
Sbjct: 975  MSSLTSIIGLIPMAFSSGSGNELLKPIAFTFIGGMTASTFLTLFFIPMLFEVFSN 1029



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V   ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSITVSNVVTGEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMRLEIASDSTNFIKASISTVVSSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFCLMYFVNISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F+  +   + V+   +I
Sbjct: 430 SSILGAQEMMMPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFSFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511


>gi|255037911|ref|YP_003088532.1| acriflavin resistance protein [Dyadobacter fermentans DSM 18053]
 gi|254950667|gb|ACT95367.1| acriflavin resistance protein [Dyadobacter fermentans DSM 18053]
          Length = 1040

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/499 (11%), Positives = 147/499 (29%), Gaps = 26/499 (5%)

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                  D V   +  + ++  S ++       + ++  + + +        +    +  
Sbjct: 50  TYRGASADEVETNVTKHIEDAVSAIEGLDQINSTSQEGVSSVIIQLKQGISVDLAQQEAQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++ V S L  D  + ++   +  EI ++      +   S   +    I  +   Q+  
Sbjct: 110 RKVEQVISLLPDDADRPVINKFSTDEIPVLRMGVTANLSPSALYDL---IDDKLKPQLSN 166

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q         Q+       +L+    + +++S                      +
Sbjct: 167 VAGVGQVTIIGGTERQIQVNISQDKLKAYHLSISQVSAAI-------------------N 207

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           + N      +V+     L+                I        + F      +   +A 
Sbjct: 208 NANTSYPAGQVKTQDDQLSIRFDAKLTTVENLRNVIVGKSSNGGQVFLRDIAEVYDGVAD 267

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE-ERNVGAD 355
                 +            ++  +     +        L        L            
Sbjct: 268 ATAVNHINGRPSVALQIQKQSDANAVDVSKLTRERLTSLEKQYASQGLKFNIASDQSIYT 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           L S         +   +V +V+ + +   +  +    ++  ++I T  L+S++G +L L 
Sbjct: 328 LASADAVVFDLGLAVLIVSVVMLLFLHSFRSSMFILVALPSSMIPTFILMSVMGFSLNLM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++  + L +G+ VD +I+V E I       +S + +   G +    T     +  ++  V
Sbjct: 388 TLMALSLVVGILVDDSIVVLENINRHMEMGKSRWQAALDGRAEIGFTALAITLVDVVVFV 447

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G  +R F++ +  S L+S+  + ++   +     + + +    +       
Sbjct: 448 PLALTQGLIGNILREFSLVVVFSTLMSLLVSFTLTPLLASRFGKVEVLDKNTLWGRLNLG 507

Query: 533 LIPDCIAIQFMRARFWGVG 551
                  I+    R     
Sbjct: 508 FEKFLDNIKEEYGRILTWV 526



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 85/253 (33%), Gaps = 12/253 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +    + V  +       +R   E       +           V LQ Q         V 
Sbjct: 237 ENLRNVIVGKSSNGGQVFLRDIAEVYDGVADATAVNHINGRPSVALQIQKQSDANAVDVS 296

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII-----SAIAMLIYIWIRFKW 690
           ++ ++++T +      Q  +                 V+        I  ++ +     +
Sbjct: 297 KLTRERLTSLEKQYASQGLKFNIASDQSIYTLASADAVVFDLGLAVLIVSVVMLLFLHSF 356

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             ++  +  L   +  T    ++ G   NL  + A+  ++G  V+D +VV + +    + 
Sbjct: 357 RSSMFILVALPSSMIPTFILMSVMGFSLNLMTLMALSLVVGILVDDSIVVLENIN---RH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                S          E    ++  ++   +  +P+A+     G+++  F++ + F  ++
Sbjct: 414 MEMGKSRWQAALDGRAEIGFTALAITLVDVVVFVPLALTQGLIGNILREFSLVVVFSTLM 473

Query: 808 AASSSIFIAAPIL 820
           +   S F   P+L
Sbjct: 474 SLLVS-FTLTPLL 485



 Score = 44.3 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 61/160 (38%), Gaps = 13/160 (8%)

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
             + +     +    + ++ + +   L   AL      + ++  ++ L+G    + +++ D
Sbjct: 877  MVALYESTIYPFVVLFSIPVALVGALTALALTMESLTIFSIVGMIMLLGLVAKNAILIVD 936

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
                  +L     + ++ + ++  E L   + T++A    +LP+A+    G  V    A 
Sbjct: 937  FAN---QLKEEGYALKEALIEAGKERLRPILMTTIAMIAGMLPIALASGDGAEVKNGMAW 993

Query: 800  PMAFGIVVAAS-------SSIFIAAPILLFIYDWRAKNAR 832
             +  G+  +         S+ ++   I   +   + +  R
Sbjct: 994  VIIGGLTSSLLLTLFLVPSAYYVVDRIKEKLAKRKKRKNR 1033


>gi|223889139|ref|ZP_03623728.1| acriflavine resistance protein [Borrelia burgdorferi 64b]
 gi|223885388|gb|EEF56489.1| acriflavine resistance protein [Borrelia burgdorferi 64b]
          Length = 1071

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 166/514 (32%), Gaps = 33/514 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K          +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSVSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKIPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVMNEIEKLKLSMPKDMKLEIASDSTDFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+  +  +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFCLMYFVNISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G   + F  T+ +S+ +S+  AI +V  +
Sbjct: 462 ELGVYGDFFKDFTFTIVISLGVSLLVAIFLVPVL 495



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V+  ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVMNEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMKLEIASDSTDFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFCLMYFVNISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F   +   + V+   +I
Sbjct: 430 SSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFTFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
               +  +F+ +      I T+ L     +    L G + ++ A   +L L+G  VN  +V
Sbjct: 885  FGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFLAGEKLSIFAAIGMLMLVGVVVNTGIV 944

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + D       L       R+ I +S    L   + +S+ + I ++PMA     G  ++  
Sbjct: 945  LVD---YTGLLIKRGFGLREAIIESCRSRLRPILMSSLTSIIGLIPMAFSSGSGNELLKP 1001

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             A     G+  +   ++F    +     +
Sbjct: 1002 IAFTFIGGMTASTFLTLFFIPMLFEIFSN 1030


>gi|23100395|ref|NP_693862.1| acriflavine resistance protein [Oceanobacillus iheyensis HTE831]
 gi|22778628|dbj|BAC14896.1| acriflavine resistance protein (cation efflux system)
           [Oceanobacillus iheyensis HTE831]
          Length = 1016

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 80/677 (11%), Positives = 186/677 (27%), Gaps = 46/677 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++   I  +G++      L    +D FP       +              +  
Sbjct: 9   KRPIGVIMVVLAIIALGVVS-----LRNLAVDLFPEIDLPVAV---------VATSYQDA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   S ++         +   + + + F +    +     V   +  
Sbjct: 55  APEDVENLISRPIESSVSSVEGIDTVQSQSQSGSSMVMMMFQNGTDLDQALLDVREQVDQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L        ++  + + + +V              E +     Q +          
Sbjct: 115 VKGMLPDQAGDPNILRFSPEAMPVVYLGLTGG----DTAELTEIANEQIVPYFERQAGVA 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++  E D +R+ Q   T+  +       NNS                   
Sbjct: 171 SVSVEGGLEREIQVELDEARMSQYGITSQSVMQAISDSNNSSSVGTVEQGNQDLQLRVTG 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   +I    +                                   +           
Sbjct: 231 EFESINDIEETRI--------------------QTEAGDVIQVSDVATVNDDFKDRSSDT 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++            +   +              L+                     S   
Sbjct: 271 LVDGEPAIVLSVMKQTDANTVEVASNIESSMEDLKGDLPEGANLKTVIDTSDFIEMSIDS 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I   +  ++L + +   +  +V   SI + +I T  L+   G TL + ++ G+ 
Sbjct: 331 VINNILIGGAIAFLILLLFLKSFRATIVIGLSIPIALISTFTLMYFTGQTLNVLTLGGLA 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIG+ VDS+I++ E I    R+  ++F S   G S     +  S  T L+  + + F  
Sbjct: 391 LGIGMMVDSSIIILENIYSYKRRGYNLFDSATKGASELAPAVIASTTTTLVVFLPIIFVE 450

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI---- 534
           G +       A+ +  S++ S+  AI++V  +   ++              RF       
Sbjct: 451 GLSADLFAPLALAVSFSLIASLVVAITLVPMLSSKLLSKAMEDKGRRYWFDRFLDWLREL 510

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTH-GLNYGIDFKGGIQLGVLANRPVDLSV 593
                 + ++ R   V + IL    S+ L+            +G  Q+ V       L+ 
Sbjct: 511 YSGGLSRVLKFRKTTVLVVILAIAGSLALIPRMGAEFMPSSDQGQAQITVETAPGSSLAY 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            ++  + +      + +        V        + A   +      +  +         
Sbjct: 571 TQTISDQVNEVLSQYDDVIETSYVTVGATGFESGNQASYTIQMTPVAEREQTTTQIVQNL 630

Query: 654 TEIVGPKISRELIRKGI 670
            + +      E++   +
Sbjct: 631 DDELQHIAGAEIVASAM 647



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 94/294 (31%), Gaps = 12/294 (4%)

Query: 546  RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
            R    G  +         +    +    +      L  ++ +    + V  +       +
Sbjct: 724  RMKFSGQVVTQYREDGQEMDVTLVYPQEERNTINDLQDMSIQSPSGAKVPLDELVELEQE 783

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
               ++   E                   V+  V+  +  I        +         E 
Sbjct: 784  QGPESLLRENQQPQMNITSDVVDRDLGSVVSDVESALDNIHFPEGYSYSIGGQAADMEEA 843

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              +  + ++ S   +   + I+F+        +  L   +   +G   + G+  ++ A  
Sbjct: 844  FAELAIALVFSIFLVYAVMAIQFENLLQPFIIMFALPTTVIGVIGGLWITGLSLSIPAFI 903

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+ L G  VN+ +V+ D +     L        + I ++    L   + T++   ++++
Sbjct: 904  GVIMLAGIVVNNSIVLVDYIN---ILRRRGTDRIESIIEAGKSRLRPILMTTLTTILAMV 960

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD-----WRAKN 830
            P+ +    G  +    A+ + FG+ V++  ++     I L   +      R K 
Sbjct: 961  PLGLGIGEGAELQQPLAVTIIFGLTVSSFFTLLFVPVIYLMFDNMTTKFRRKKK 1014



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/269 (13%), Positives = 82/269 (30%), Gaps = 13/269 (4%)

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
            L   G    I+     ++   A   + +S V +  +  +               L  ++
Sbjct: 225 QLRVTGEFESINDIEETRIQTEAGDVIQVSDVATVNDDFKDRSSDTLVDGEPAIVLSVMK 284

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
               ++V     +E   + +   +P      T I         I   I  ++I      +
Sbjct: 285 QTDANTVEVASNIESSMEDLKGDLPEGANLKTVIDTSDFIEMSIDSVINNILIGGAIAFL 344

Query: 683 YI-----WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            +       R      L     LI     T       G   N+  +  +   IG  V+  
Sbjct: 345 ILLLFLKSFRATIVIGLSIPIALI----STFTLMYFTGQTLNVLTLGGLALGIGMMVDSS 400

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           +++ + +           +  D   K  +E     + ++    +  LP+    G     F
Sbjct: 401 IIILENI---YSYKRRGYNLFDSATKGASELAPAVIASTTTTLVVFLPIIFVEGLSADLF 457

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           A P+A  +  +  +S+ +A  ++  +   
Sbjct: 458 A-PLALAVSFSLIASLVVAITLVPMLSSK 485


>gi|71898383|ref|ZP_00680556.1| Acriflavin resistance protein [Xylella fastidiosa Ann-1]
 gi|71731906|gb|EAO33964.1| Acriflavin resistance protein [Xylella fastidiosa Ann-1]
          Length = 636

 Score =  138 bits (347), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 66/584 (11%), Positives = 155/584 (26%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  +GL+  L   +      + P    + R   G D            
Sbjct: 9   KRPIGTSLLAIGVFVLGLICYLQLSVAPLPKFQIPVIFVEAR-QAGAD------------ 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        S  +  + + L F  +R  ++ A  V   +  
Sbjct: 56  -ASTMASTVTAPLERYLGQIPGIKRMRSSSSESNSNVFLLFQSNRNIDSAAQDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L               +  I+      D     A              +   +   
Sbjct: 115 AQADLPSGMLPPSYEKANPNDDPIIALALTSDTQSMDA--LYNVADSLLAQHLRQIQGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +  + D   L  L  T  ++       N +    +              
Sbjct: 173 SVDIVGASTPAVRVDVDMHALNALGLTMDQLQNAVRAANVTSPTGLLSNDTRTTEILLNS 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                       +   +   R         +           
Sbjct: 233 TISKAAD-------------------FAHLVIATQPNGRIVRLSDIAQVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +   T++        L     P  +      +      S   
Sbjct: 274 WFNHKRAVVMYVFLRTGANVVETVDRVKAELPTLHTYLPPGTVLTPYFDHTPTIRASLYE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      ++A  ++ L++     ++  L  TL   ++  +V
Sbjct: 334 IQTTLIISLAMVMLTMALFLRRLAPTVIAAATVPLSLAGAAIVMYALDFTLNNVTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG  VD  I++ E I        S   +   G     STI    ++ ++      F  
Sbjct: 394 IAIGFVVDDAIVMIENISRHLNTGMSPLEAALTGAREIGSTIVSITVSLVVVFAPFLFDH 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F IT+  +I+ISM  ++++  A+    +    +        +    +   I
Sbjct: 454 GMIGTLFGEFGITLVAAIIISMLVSLTLTPALCSRFLSAHVVPEKSNGIGAWLERMYLRI 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +  A  + +  ++L ++  + L+    +  G   KG     
Sbjct: 514 LRLYTVALDFSLRHALLLALTPLLLIVLTVMLAGAISKGTFPSQ 557



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 59/153 (38%), Gaps = 11/153 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +IIS   +++ + +  +     + A  T+ L +              N   + A++  IG
Sbjct: 338 LIISLAMVMLTMALFLRRLAPTVIAAATVPLSLAGAAIVMYALDFTLNNVTLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA-FISVLPMAVWG 790
           + V+D +V+ + +    +   T +S  +       E     V  S+    + V    ++ 
Sbjct: 398 FVVDDAIVMIENI---SRHLNTGMSPLEAALTGAREIGSTIV--SITVSLVVVFAPFLFD 452

Query: 791 GSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
             +I    G F I +   I+++   S+ +   +
Sbjct: 453 HGMIGTLFGEFGITLVAAIIISMLVSLTLTPAL 485


>gi|212710906|ref|ZP_03319034.1| hypothetical protein PROVALCAL_01974 [Providencia alcalifaciens DSM
           30120]
 gi|212686603|gb|EEB46131.1| hypothetical protein PROVALCAL_01974 [Providencia alcalifaciens DSM
           30120]
          Length = 1030

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/642 (12%), Positives = 171/642 (26%), Gaps = 40/642 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G L  L   +       +P                     L    
Sbjct: 11  RPVATTLISVAITLCGALSFLFLPVAPLPQVDYPVIR--------------VSASLPGAS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S       ITL F  ++   N A +V   L   
Sbjct: 57  PETMASSIATPLERSLGSIAGLNEMTSSSSLGSTTITLEFDLTKDINNAAREVQAALNAA 116

Query: 123 NSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            + L      +     +   +  I++     + +     E       +   +I   E   
Sbjct: 117 QNLLPSGMPSRPRYYKSNPSDAPIMILTLTSNTL--STGEMYDVASTRLAQRIAQIEGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P+ L     +   +       N  +          R       
Sbjct: 175 EVTVGGGSLPAVRVELNPTALFNQGVSLDAVRSAISSANVRQPQGYINNPDNRYQVQTND 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                       I                 +   +  V    
Sbjct: 235 ELKKAAD--------------------YRPIIVHYSNGNAVKLSDVATVKDSVQNVRAAG 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           + +       I   +A  +   T++         +          V +        S + 
Sbjct: 275 MSSGEPAILIIIRREAGANIIETVKRIREEIPEFKDMIPAAIDLQVAQDRTPTIKASLAE 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   LV++V+ + +  G+  L+   ++ +++I T   + L G +L   S+  + 
Sbjct: 335 VERALMIAIALVILVVLLFLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMALT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I       +  F +   G S    T+   +I+ +   + L    
Sbjct: 395 VATGFVVDDAIVVLENISRHIENGRKPFIAAIKGVSEVGFTVVSMSISLVAVFIPLLLMD 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FAIT+  +I IS+  ++++   M   +++ +  K           LI    
Sbjct: 455 GLVGRLFREFAITLSTAIGISLVISLTLTPMMCAHLLKKRGDKVNAKRQGFGRVLIRLQE 514

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           +             S+L  + +   L  +            Q        V      S  
Sbjct: 515 SYGVTLNWVLSHRRSVLAVLIAAIGLNVYLYISIPKAFFPEQDTGRLLGFVRADQSISFQ 574

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              Q      Q    +        +  G  V    +   +K 
Sbjct: 575 SMKQKMTSFMQQVKADPAVDSVTGFTGGSRVNSGSMFISLKP 616



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 93/217 (42%), Gaps = 6/217 (2%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +   D       ++ V+K +T +   ST++ T     ++ +E ++  +  ++ + + 
Sbjct: 804  TISFNVADGYTLNDAIDAVEKTMTSLGVPSTVRGTFAGTAQVFQETLKSQLFLILAAIVT 863

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + + I ++ +   L  ++TL       L    LF   F+L A+  ++ LIG  + + +
Sbjct: 864  VYLVLGILYESYIHPLTILSTLPSAGVGALLALELFDTPFSLIALIGIMLLIGIVMKNAI 923

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D            +S R+ I ++        V T++AA    LP+ +    G  +  
Sbjct: 924  IMVD--FALQAQRNAHLSAREAILRASLLRFRPIVMTTLAAIFGALPLMLGTGDGAELRQ 981

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I +  G++++   ++F    + L     R + +R
Sbjct: 982  PLGIAIVGGLIMSQLLTLFTTPVVYLSFDSLRQRFSR 1018



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 6/148 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + + +  T     L G   N  ++ A+    G+ V+D +VV + + 
Sbjct: 353 FLRSGRATLIPAIAVPVSLIGTFTAMYLCGFSLNNLSLMALTVATGFVVDDAIVVLENI- 411

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
              +             K ++E     V  S++     +P+ +  G V      FAI ++
Sbjct: 412 --SRHIENGRKPFIAAIKGVSEVGFTVVSMSISLVAVFIPLLLMDGLVGRLFREFAITLS 469

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830
             I ++   S+ +   +   +   R   
Sbjct: 470 TAIGISLVISLTLTPMMCAHLLKKRGDK 497


>gi|225551935|ref|ZP_03772875.1| acriflavine resistance protein [Borrelia sp. SV1]
 gi|225370933|gb|EEH00363.1| acriflavine resistance protein [Borrelia sp. SV1]
          Length = 1070

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 87/587 (14%), Positives = 182/587 (31%), Gaps = 46/587 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K          +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSVSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQAPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKIPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVMNEIEKLKLSMPKDMRLEIASDSADFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+  +  +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFCLMYFVNISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGTKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + F+ T+ +S+ +S+  AI +V  +               + +  +     
Sbjct: 462 ELGVYGDFFKDFSFTIVISLGVSLLVAIFLVPVL-------------SSHYVGLYTSFQK 508

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
            I   F+R           F       L    LN+ + F   +    
Sbjct: 509 NIKNPFIRKIDAFFASIYYFLEFLYINLLNIVLNHKLIFGLIVFFTF 555



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 76/262 (29%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V+  ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVMNEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMRLEIASDSADFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFCLMYFVNISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGTKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F+  +   + V+   +I
Sbjct: 430 SSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFSFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
               +  +F+ +      I T+ L     +    L G + ++ A   +L L+G  VN  +V
Sbjct: 884  FGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFLAGEKLSIFAAIGMLMLVGVVVNTGIV 943

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + D       L       R+ I +S    L   + +S+ + I ++PMA     G  ++  
Sbjct: 944  LVD---YTGLLIKRGFGLREAIIESCRSRLRPILMSSLTSIIGLIPMAFSSGSGNELLKP 1000

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             A     G+  +   ++F    +     +
Sbjct: 1001 IAFTFIGGMTASTFLTLFFIPMLFEIFSN 1029


>gi|195942356|ref|ZP_03087738.1| acriflavine resistance protein [Borrelia burgdorferi 80a]
 gi|195942379|ref|ZP_03087761.1| acriflavine resistance protein [Borrelia burgdorferi 80a]
 gi|195942398|ref|ZP_03087780.1| acriflavine resistance protein [Borrelia burgdorferi 80a]
 gi|216264189|ref|ZP_03436181.1| acriflavine resistance protein [Borrelia burgdorferi 156a]
 gi|225549319|ref|ZP_03770292.1| acriflavine resistance protein [Borrelia burgdorferi 94a]
 gi|215980662|gb|EEC21469.1| acriflavine resistance protein [Borrelia burgdorferi 156a]
 gi|225370177|gb|EEG99617.1| acriflavine resistance protein [Borrelia burgdorferi 94a]
          Length = 1071

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 166/514 (32%), Gaps = 33/514 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K          +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSVSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKIPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVMNEIEKLKLSMPKDMKLEIASDSTDFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+  +  +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFCLMYFVNISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G   + F  T+ +S+ +S+  AI +V  +
Sbjct: 462 ELGVYGDFFKDFTFTIVISLGVSLLVAIFLVPVL 495



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V+  ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVMNEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMKLEIASDSTDFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFCLMYFVNISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F   +   + V+   +I
Sbjct: 430 SSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFTFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
               +  +F+ +      I T+ L     +    L G + ++ A   +L L+G  VN  +V
Sbjct: 885  FGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFLAGEKLSIFAAIGMLMLVGVVVNTGIV 944

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + D       L       R+ I +S    L   + +S+ + I ++PMA     G  ++  
Sbjct: 945  LVD---YTGLLIKRGFGLREAIIESCRSRLRPILMSSLTSIIGLIPMAFSSGSGNELLKP 1001

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             A     G+  +   ++F    +     +
Sbjct: 1002 IAFTFIGGMTASTFLTLFFIPMLFEIFSN 1030


>gi|308182770|ref|YP_003926897.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori PeCan4]
 gi|308064955|gb|ADO06847.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori PeCan4]
          Length = 1025

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++         +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMDKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  K  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPKHSRFYVWSEPFFKALESYYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     +     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKIGMEFM 540



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/167 (13%), Positives = 67/167 (40%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ +  + + + + +   ++        + T+ L  +      +L     ++ ++  ++ 
Sbjct: 853  LIAIATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALSLVHQPLSMFSMIGLIL 912

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+
Sbjct: 913  LIGMVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLAL 969

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 970  ASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1016



 Score = 39.7 bits (90), Expect = 2.4,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +  R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMDKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|190576106|ref|YP_001973951.1| putative AcrB/AcrD/AcrF family protein [Stenotrophomonas
           maltophilia K279a]
 gi|190014028|emb|CAQ47668.1| putative AcrB/AcrD/AcrF family protein [Stenotrophomonas
           maltophilia K279a]
          Length = 1040

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/584 (11%), Positives = 152/584 (26%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +GL+  L   +        P                  H      
Sbjct: 9   RRPIGTALLAIGLFMVGLICYLRLGVSALPNIEIPVIF--------------VHASQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + + F      ++ A  V   +  
Sbjct: 55  DAATMASTVTAPLERHLGQLPGIDRMRSSSSEGSSLVFMIFQSGHNIDSAALDVQTAINS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L       +       +  ++            A E           +I       
Sbjct: 115 AQADLPSGMGSPMYQKANPNDDPVIAIALTSQ--TQSADELYNVADSLLAQRIRQISGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + +   +  L  T   +       N +             +     
Sbjct: 173 SVDIAGASTPAVRVDVNLRLMNALGLTADDLRNAVRAANVTSPTGFLSDGNTTTAIIAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                       +   +   R        N+           
Sbjct: 233 SVARAAD-------------------FADLVVKTQGDGRVIRLKDIANVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR    P                S   
Sbjct: 274 WFDHKPAVVMYVFTRAGANIVETVDRVKAQIPTLRDYLQPGTTMTPYFDRTPTIRSSLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++     ++ ++G TL   S+  +V
Sbjct: 334 VQITLLISLAMVVLTMALFLRRLAPTLIAAVTVPLSLAGAALVMYVMGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG  VD  I+V E I     +      +   G      TI     + +   + L F  
Sbjct: 394 IAIGFVVDDAIVVIENIMRHLDEGMPRMQAALTGAREIGFTIVSITASLVAVFIPLLFAS 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F +T+  +I++SM  ++++  A+    +      +             + +
Sbjct: 454 GMMGAFFREFTVTLVAAIVVSMIVSLTLTPALCSRFLSAHDHSAPPSRFGRWLDAGHERM 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +     + +  ++L S+  + L+      +G   KG     
Sbjct: 514 LRIYTVFLDFSLRHALLLSLTPLILIGATVFLFGAVKKGAFPPQ 557



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 80/246 (32%), Gaps = 10/246 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V       +  ++           ++Q    +    V +             ++ VK 
Sbjct: 243 LVVKTQGDGRVIRLKDIANVYDGQQDAYQAAWFDHKPAVVMYVFTRAGANIVETVDRVKA 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFA-LGA 696
           +I  +        T       +  +        + ++IS   +++ + +  +     L A
Sbjct: 303 QIPTLRDYLQPGTTMTPYFDRTPTIRSSLHEVQITLLISLAMVVLTMALFLRRLAPTLIA 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             T+ L +        + G   N  ++ A++  IG+ V+D +VV + +   M+     + 
Sbjct: 363 AVTVPLSLAGAALVMYVMGFTLNNLSLLALVIAIGFVVDDAIVVIENI---MRHLDEGMP 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
                     E     V  + +     +P+       G+    F + +   IVV+   S+
Sbjct: 420 RMQAALTGAREIGFTIVSITASLVAVFIPLLFASGMMGAFFREFTVTLVAAIVVSMIVSL 479

Query: 814 FIAAPI 819
            +   +
Sbjct: 480 TLTPAL 485



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 85/248 (34%), Gaps = 13/248 (5%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +       V ++ V + +  L    I+ +N     +    L        A+  +   V  
Sbjct: 775  VRARNGDMVPITAVATQMPGLAPSQITHENQYTTMDLSYNLAPNVSMGEAKAIIDATVAG 834

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                                 S  LI      V  + + + + + + ++       I + 
Sbjct: 835  MRMPGDIRLADDAGFGFNSDPSDMLIL-----VFAAILTVYLVLGMLYESLIHPVTILS- 888

Query: 701  ILDITKTLGFFALFGI--EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             L         ALFG   E ++ ++ A++ LIG    + +++ D     +      ++ R
Sbjct: 889  TLPAAGVGALLALFGTNTELSVISMIALVLLIGIVKKNAIMMID--FALVTQREHGLAPR 946

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            D   ++        + T+M A ++ +P+A+    G  +     I M  G++ + S ++  
Sbjct: 947  DAAREASIVRFRPIMMTTMVAILAAVPLAIGLGEGSELRRPLGIAMIGGLLFSQSLTLLS 1006

Query: 816  AAPILLFI 823
               + +  
Sbjct: 1007 TPALYVIF 1014


>gi|294101361|ref|YP_003553219.1| acriflavin resistance protein [Aminobacterium colombiense DSM
           12261]
 gi|293616341|gb|ADE56495.1| acriflavin resistance protein [Aminobacterium colombiense DSM
           12261]
          Length = 1017

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/539 (11%), Positives = 150/539 (27%), Gaps = 40/539 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +   M   +G+            +   P                          
Sbjct: 13  RPVFTSVTVLMAIVLGVYS-----YLNLGIALVPDVDIPVI---------SVTTTYLGAG 58

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  S ++          +  + + + F            V+  ++ +
Sbjct: 59  PSEIELLVSKPIEDAVSQVEGVKRIRSYSLEGISFVVVEFEYDINISEATMDVSNRVKAI 118

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L  D K  +           +    + +    +A +   + I++R+ Q+       +
Sbjct: 119 SGTLPEDSKDPITEKFDINAFPFMTIAISSNLPPEYAFDIVEDRIQRRLTQLQ---GLAR 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  ++    DP  L Q   +  K+       N +             S      
Sbjct: 176 AEIIGGLKREIHVYLDPVELHQYQISPDKIIQVLQRNNFNDPSGHIVQGRKELSVRVLGE 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           VED +E+  I +                       G+          +            
Sbjct: 236 VEDPLELENIRIPLH--------------------GSTSIRLGDIGKVADTTEERRGYAR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +     +        ++          + +        S    
Sbjct: 276 YEGKEAILLDCIATPGSNIVEVSDRIKEELEDIKLLLPEGFEVTITDDISTFVRESIRNV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L  +VLF+ +       V   ++   +I T   + + G T+ + S  GI +
Sbjct: 336 FRDMVVGILLTGLVLFLFLQRISLTFVVAVAMPTAIISTFIPMFVSGITMNMMSTLGIAI 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMG---FSRAYSTIFDSNITALIATVVLFF 479
            +G+ V+++ILV E I       +  F + + G    + +  +   +N+   I  V +  
Sbjct: 396 SVGILVNNSILVLENIYRYREMGEGPFEASEKGTADIALSVFSTTATNLGVFIPVVFMKG 455

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
             G  +R FA+T+  + + S++ A+++   +   I    K         + +  + D  
Sbjct: 456 IAGQFLRDFALTIVFATIFSLWVAMTLTPMVAARIRYGSKPSVFSQKATAWWSWMYDKF 514



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 89/247 (36%), Gaps = 7/247 (2%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                      V  +  S     +   +                +  +     E ++ K+ 
Sbjct: 768  EFPVATSAGFVPLSSMSEFTHGVGPTSILRSDRTRAITIEGDVNGRSVGSAFEEIQVKLK 827

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLIL 702
            E+      + +     +  +E      V   ++ +   + I  I   + +A   + TL L
Sbjct: 828  EVTLPRGYRFSYAGEVEDIKENFYYLFVAFAMAIVLTFLMIAAILESYIYAFIIMVTLPL 887

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                 L F  +     +L  +  V+ L+G  VN+ +V+ D      K     +S R+ I 
Sbjct: 888  SAIGVLPFLYITNTAISLYGLLGVVMLVGLVVNNAIVIID---YAEKKRKEGVSPREAIR 944

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++ +  L   V   + + I+++P+A+    GG      AI +  G++   + ++F+  P+
Sbjct: 945  EACSVRLRPIVMADLTSIIAMIPLALGEGAGGPYRAPMAIVVIGGLLAGGTLALFVVPPV 1004

Query: 820  LLFIYDW 826
               ++  
Sbjct: 1005 YGILHRR 1011



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 87/244 (35%), Gaps = 7/244 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            I++ +  +  + L  +    ++ +      +    E   L  +     + V  +  ++ 
Sbjct: 244 NIRIPLHGSTSIRLGDIGKVADTTEERRGYARYEGKEAILLDCIATPGSNIVEVSDRIKE 303

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGA 696
             + I  ++P               RE IR     +++  +   + +++   +       
Sbjct: 304 ELEDIKLLLPEGFEVTITDDISTFVRESIRNVFRDMVVGILLTGLVLFLFLQRISLTFVV 363

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTT 753
              +   I  T     + GI  N+ +   +   +G  VN+ ++V +   R R+ M     
Sbjct: 364 AVAMPTAIISTFIPMFVSGITMNMMSTLGIAISVGILVNNSILVLENIYRYRE-MGEGPF 422

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             S +   D ++      +  T++  FI V+ M    G  +  FA+ + F  + +   ++
Sbjct: 423 EASEKGTADIAL-SVFSTT-ATNLGVFIPVVFMKGIAGQFLRDFALTIVFATIFSLWVAM 480

Query: 814 FIAA 817
            +  
Sbjct: 481 TLTP 484


>gi|319781188|ref|YP_004140664.1| acriflavin resistance protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167076|gb|ADV10614.1| acriflavin resistance protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 1027

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 79/611 (12%), Positives = 165/611 (27%), Gaps = 51/611 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  MI  +G        +    + ++P                 + + +   
Sbjct: 9   RRPVLSTVLACMILLLG-----FQGIFNLSIRQYPKVDE-------------TAITITTA 50

Query: 62  EDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +Q           +  +       S R   + +T+        +    +V  
Sbjct: 51  YPGASADLIQGFISAPIARAVASTENIDYVTSSSRPSSSTVTVQMKLGSNPDVALTEVLS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +QGV   L    K  ++V  T ++ +++        +     + +  I R    ++   
Sbjct: 111 KVQGVRGTLPDASKDPVIVKGTGQQFAMMYISMQNPNMTKE--QLTEYIERVIRPRMSTV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP +L     T +++       N           ++  S 
Sbjct: 169 EGVADVQIFGAQEYSMRVWIDPVKLAARGVTASELLTAINNSNFLSAPGNTQNEYVVSSI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  ++                      +   ++                 +       
Sbjct: 229 TVRSTLQTP--------------------EAFAELPLRSTDGNVVRLRDVARVELAAENT 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T      L   ++          V     G    
Sbjct: 269 DTRVSFNGKPGTFLAIFPTPAANPLTTAAALTKLVPQIQETLPKGMTIEVVYDATGQISA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V++V+ + +   +  ++   +I L++I    LL  +G ++ L S+
Sbjct: 329 SIEEVFKTIGEAVAIVVVVILLFLGSFRSVMMPIITIPLSLIGVCFLLFAVGYSINLLSL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E I       + S   +   G     S I    +T       
Sbjct: 389 LAMVLAIGLVVDDAIVVVENIHRHMEEDHMSPMQAAFSGMREIASAIVAMTMTLAAVFAP 448

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F G   G   R FA+T+  S+++S   AI+I   M   +++              F  
Sbjct: 449 LAFTGGLTGALFREFAVTLAGSVVLSGVIAITITPMMSARLLKSGTPGRFQRIVDGTFAR 508

Query: 534 IPDCIAIQFMR---ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
           +              R   + I +     +  +          +   G  L ++      
Sbjct: 509 VEHVYERAVTGSLNYRPLTLIIVLALVGVTGFMFTKTSSELAPEEDQGFLLSIVTAPRYA 568

Query: 591 LSVVRSNLESL 601
            S       + 
Sbjct: 569 TSDYTETYVNQ 579



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   +  I T+ L +          G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVMMPIITIPLSLIGVCFLLFAVGYSINLLSLLAMVLAIGLVVDDAIVVVENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               +    +S        + E     V  +M       P+A  G   G++   FA+ +A
Sbjct: 411 --RHMEEDHMSPMQAAFSGMREIASAIVAMTMTLAAVFAPLAFTGGLTGALFREFAVTLA 468

Query: 803 FGIVVAASSSIFIAA 817
             +V++   +I I  
Sbjct: 469 GSVVLSGVIAITITP 483



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 86/276 (31%), Gaps = 11/276 (3%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            D  G   +  +    V LS V     +     I   N        
Sbjct: 744  YDIIPQVPQEFRDDPDKLGEYFVRSVTGEMVPLSAVVKISTNAAPAAIEQFNQLNSSTIS 803

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           + ++ K+ + +   +     +     + +  L     +    + +
Sbjct: 804  ALPLPGVTTGDGLKALEDIAKESLPDTFFIDYSGQSRQEKEQGNTIL-----IAFAAAVV 858

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  +  + L I   +    L     N+     ++TLIG      
Sbjct: 859  VIYLVLAAQFESFRDPLIIMMAVPLSIFGAIVPLNLGLGTLNIYTQVGLITLIGLITKHG 918

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ +    N +     +  RD I  S    L   + T+ A  + V+P+      G +  
Sbjct: 919  ILLVE--FANQQREKHGMRRRDAIIASAKVRLRPILMTTAAMALGVVPLITSSGAGAAAR 976

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             S  + +  GI+V    ++F+      FI      +
Sbjct: 977  YSMGLVIFTGILVGTMFTLFVVPMFYTFIASKDLPH 1012


>gi|259909511|ref|YP_002649867.1| Acriflavin resistance protein [Erwinia pyrifoliae Ep1/96]
 gi|224965133|emb|CAX56665.1| Acriflavin resistance protein [Erwinia pyrifoliae Ep1/96]
 gi|283479591|emb|CAY75507.1| Cation/multidrug efflux pump mdtC [Erwinia pyrifoliae DSM 12163]
          Length = 1032

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/574 (11%), Positives = 161/574 (28%), Gaps = 37/574 (6%)

Query: 56  LVLEVDEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           +++           +        +     +           Q  + I L F+  R     
Sbjct: 45  ILVTASLPGASPETMAATVATPLERALGQIAGISEMTSQSSQSASTIILQFSLDRDINGA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
           A  V   +    S L                 + ++    +      + E       +  
Sbjct: 105 ARDVQAAINAARSLLPSSMPSLPTYRKANPSDAPIVM-LALSSSTRTSAELYDLAESKIQ 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            +I       Q       L  +  +  P +  +   +   +         ++   M    
Sbjct: 164 QRISQVNGVGQVSLRGSALPGVRIDLQPQQQSRYGVSLDTVREAIANSTTNRPKGMLE-- 221

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                D   ++V+   ++                 K   ++       R         + 
Sbjct: 222 ----GDRQSWMVDGNGQLD--------------RAKQYRNLVVSYQNGRAIRLSDVAAVY 263

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +    +              +  A  +   TI+       ++           +    
Sbjct: 264 DAVEDKYNVGYYNGVPSVMIGVTRSAGANMLQTIDGIKAQMPLIEKELPADMKLAMVVDR 323

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S    + T  I   LV+ V+F+ +   +  ++   ++ L++I T A++ LL  +
Sbjct: 324 APNVRASLYDTEETLLIATLLVIGVVFIFLRDIRAVVIPALALPLSLIGTCAVMYLLDYS 383

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L   S+  +++  G  VD  ++V E I        S   +   G      T+    ++ +
Sbjct: 384 LDNLSLMALIIATGFVVDDAVVVLENITRHIEAGLSPVRAAITGAKEVSFTVLSMTLSLV 443

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + +   G   G   R FA+T+ +S++ISM  ++S+   +   +++ +        PL
Sbjct: 444 AVFIPILLMGSIVGRLFREFAVTLTVSLIISMLVSLSLTPMLCSRLLKRRSPLERRPPPL 503

Query: 529 SRFFLIPDCI---------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           SR+                       R     + +   +            +     G +
Sbjct: 504 SRWIERGLNHLLAQYAAALGWVMRHQRLTLFSLILTVLLNIFLYSVVQKGFFPSQDTGLL 563

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
              + A++ V    +   ++       +    DG
Sbjct: 564 MGMMRADQNVSFQAMEPKMQQFASLIAADPAVDG 597



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/257 (11%), Positives = 81/257 (31%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMV 638
            +     R + LS V +  ++++               +   +    +       +   +
Sbjct: 245 VVSYQNGRAIRLSDVAAVYDAVEDKYNVGYYNGVPSVMIGVTRSAGANMLQTIDGIKAQM 304

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
                E+     +       P +   L       +I + + + +           +    
Sbjct: 305 PLIEKELPADMKLAMVVDRAPNVRASLYDTEETLLIATLLVIGVVFIFLRDIRAVVIPAL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L L +  T     L     +  ++ A++   G+ V+D VVV + +    +     +S  
Sbjct: 365 ALPLSLIGTCAVMYLLDYSLDNLSLMALIIATGFVVDDAVVVLENI---TRHIEAGLSPV 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  +++     +P+ + G   G +   FA+ +   ++++   S+ +
Sbjct: 422 RAAITGAKEVSFTVLSMTLSLVAVFIPILLMGSIVGRLFREFAVTLTVSLIISMLVSLSL 481

Query: 816 AAPILLFIYDWRAKNAR 832
              +   +   R+   R
Sbjct: 482 TPMLCSRLLKRRSPLER 498


>gi|254447570|ref|ZP_05061036.1| multidrug efflux RND transporter [gamma proteobacterium HTCC5015]
 gi|198262913|gb|EDY87192.1| multidrug efflux RND transporter [gamma proteobacterium HTCC5015]
          Length = 523

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/513 (11%), Positives = 156/513 (30%), Gaps = 40/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   I  +GL  A         + +FP  +    I+         + V    
Sbjct: 9   KQPVLATVVSLFIILLGLRSA-----TDLNVRQFPE-LSNAVIN--------INTVYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   + GF+    ++  +          +     + I            +  +V   +  
Sbjct: 55  DSSLIQGFITTPLEQEIASANGIDYISSTSLNGASSIQAYVRFDADPNEVLTEVVAKVNK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L  + +   +     +  + +    + + + ++  + +  ++R    ++       
Sbjct: 115 LRSELPANSEDPTVDLAVGQSTAAMYLSFSSNILNNN--QITDYLVRVVQPKLATIAGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+  L  T +++       N                 G+  
Sbjct: 173 KAEILGNRTFAMRIWMQPDRMAALGITPSEVYAALQANNVLSA------------VGSTK 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V++           F+         +     G          ++           
Sbjct: 221 GTMVTVDLKADTDLNQVEEFEK--------LVVRSDGDTIVRIEDIADVELGSESYAASV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                +      +     +    I      L + +           +   +      S  
Sbjct: 273 TFNGEMATFIGVNVAPDANSLDVIAAVHEKLESEVYPQLPEGLEASIPYDSTEYIQDSID 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T A    +V++V+++ +   +  L+   ++ +++I    L+ L+G T+ L ++  +
Sbjct: 333 EVITTIAEAIAIVVVVIYLFLGSIRSVLIPALAVPVSMIGAFFLMQLMGFTINLLTLLSM 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IG+ VD  I+V E I     + ++   +   G       +     T +   + + F 
Sbjct: 393 VLAIGIVVDDAIIVLENIHRHIEEGKAPVDAALEGARELAWPVIAMTTTLVAVYLPIGFM 452

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAM 510
           GG        FA T+  S+L+S   A+++   M
Sbjct: 453 GGMTGTLFTEFAFTLAGSVLLSGIVALTLSPMM 485



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 77/238 (32%), Gaps = 10/238 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V      D+ +   +  +    +     F G              +V +    E+  +  
Sbjct: 253 VRIEDIADVELGSESYAASVTFNGEMATFIGVNVAPDANSLDVIAAVHEKLESEVYPQLP 312

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +       +TE +   I   +     +   I+ + ++IY+         L     + +
Sbjct: 313 EGLEASIPYDSTEYIQDSIDEVITT---IAEAIAIVVVVIYL-FLGSIRSVLIPALAVPV 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +        L G   NL  + +++  IG  V+D ++V + +    +      +  D   
Sbjct: 369 SMIGAFFLMQLMGFTINLLTLLSMVLAIGIVVDDAIIVLENIH---RHIEEGKAPVDAAL 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           +   E     +  +       LP+   GG        FA  +A  ++++   ++ ++ 
Sbjct: 426 EGARELAWPVIAMTTTLVAVYLPIGFMGGMTGTLFTEFAFTLAGSVLLSGIVALTLSP 483


>gi|15645232|ref|NP_207402.1| acriflavine resistance protein (acrB) [Helicobacter pylori 26695]
 gi|2313726|gb|AAD07671.1| acriflavine resistance protein (acrB) [Helicobacter pylori 26695]
          Length = 1028

 Score =  138 bits (347), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 67/589 (11%), Positives = 163/589 (27%), Gaps = 43/589 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    +P+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYANPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQREFSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKRIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM--- 543
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTKLLQWVLN 512

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                 + + ++F                 + +G   + + A   V + 
Sbjct: 513 HKIIISIAVVLVFVGSLFVASKIGMEFMLKEDRGRFLVWLKAKPGVSID 561



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   V 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 39.3 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 79/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K+I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKRI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|326795348|ref|YP_004313168.1| acriflavin resistance protein [Marinomonas mediterranea MMB-1]
 gi|326546112|gb|ADZ91332.1| acriflavin resistance protein [Marinomonas mediterranea MMB-1]
          Length = 1041

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 61/520 (11%), Positives = 146/520 (28%), Gaps = 44/520 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-VD 61
            +  +++ + +I   G +        +   +  P                   + LE + 
Sbjct: 11  RSRTVLMFFVLILISGTVS-----YIEIAKESNPDITIPMAY---------ISVSLEGIS 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +D  +  +     ELR  L+       +  +    I L F      +         +  
Sbjct: 57  PEDADSLLVHPLETELRD-LEGLKEIKSTASEGHASIILEFETGTDIDQALIDAQNKVDR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  D  +  +         ++    + +   +     + +      D+I   +  +
Sbjct: 116 AKSELPSDADEPTVNEINLSTFPVLRVNLSGNTDFATLSRVAND----LKDEIESVQGVL 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S     +     +  +L         ++      N             R       
Sbjct: 172 EADISGDRDQRAEIIINQQKLDAYNLVLTDVANLVSNNNRLVAAGTLDTGAGRYPLKVPG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+E K +I                    +++     G                       
Sbjct: 232 LLETKSDI--------------------LELPIKVDGNDVVRLGDIAEGELTFEDATSYA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          S +   +   TI+    +     A         + +        S + 
Sbjct: 272 RVDGQRSITLGVSKRVGANIINTIDAVKEVIKKESANWPEGVEYSLSQDESVNIKTSLND 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV++V+   +      ++   +I    +  + LL+  G T+ +  +  ++
Sbjct: 332 LFNNVLAATLLVMVVILWALGVR-SAILVGLAIPGAFLSGILLLNAQGYTINMVVLFALI 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+V E    +  +  S   +      R    I  S  T L   + L F+ 
Sbjct: 391 LSVGMLVDGAIVVTEYADRKLAEGASKRQAYAEAAKRMAWPITASTATTLAVFMPLLFWP 450

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
              G  +R   IT+  ++  ++  A+ ++  +   I +  
Sbjct: 451 DIVGEFMRYMPITVIATLSSALVMALIVLPTIGSIIGKKG 490



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 76/242 (31%), Gaps = 5/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V  N  V L  +     + +      +        L   +    + +     ++ V 
Sbjct: 243 PIKVDGNDVVRLGDIAEGELTFEDATSYARVDGQRSITLGVSKRVGANIINTIDAVKEVI 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           KK +   P     +         +  +      V+ + + +++ I        A+     
Sbjct: 303 KKESANWPEGVEYSLSQDESVNIKTSLNDLFNNVLAATLLVMVVILWALGVRSAILVGLA 362

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +       +      G   N+  + A++  +G  V+  +VV +      +      S R 
Sbjct: 363 IPGAFLSGILLLNAQGYTINMVVLFALILSVGMLVDGAIVVTE---YADRKLAEGASKRQ 419

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              ++          ++       +P+  W   ++G F   M   ++ A  SS  + A I
Sbjct: 420 AYAEAAKRMAWPITASTATTLAVFMPLLFWP-DIVGEFMRYMPITVI-ATLSSALVMALI 477

Query: 820 LL 821
           +L
Sbjct: 478 VL 479



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 86/240 (35%), Gaps = 27/240 (11%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                 + ++    D +   +V++ ++ ++       T+Q       +   +     +   
Sbjct: 803  GGKKSITIKADVQDGLVVDQVIQGIRSELVASDLPDTLQFEFRGNTEDQEKSQSFLMKAF 862

Query: 674  IISAIAMLIYIWIRFKWYFALGAITT--LILDITKTLGFFAL---FGIEFNLTAVAAVLT 728
             ++   M I +  +F  +F    I +  +   +   +G       FGI  +   V A+  
Sbjct: 863  GVAFFIMAIILVTQFNNFFQCLLILSAVIFSTMGVLIGLMLKGEPFGIVMSGVGVIALA- 921

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
              G  VN+ +V+ D       L    +  ++   ++  + L   + T++   + ++PM  
Sbjct: 922  --GVVVNNNIVLIDTFN---GLRKQGMRVKEAAVRTGVQRLRPVMLTTITTILGLVPMVF 976

Query: 789  -WGGSVIG--------------SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                 ++                 +  +A G+  A   ++ I  P LL +   RA+  ++
Sbjct: 977  QLNIDLVHQSISVGAPSAQWWTQLSTAIAGGLTFATPLTL-ILTPCLLVLGYRRAERKQM 1035


>gi|330811318|ref|YP_004355780.1| multidrug efflux protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379426|gb|AEA70776.1| Putative multidrug efflux protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 1008

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/628 (11%), Positives = 178/628 (28%), Gaps = 52/628 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G          +  L ++P                   + +   
Sbjct: 9   RRPVLATVVSLLIVLLG-----FQAWSKLPLRQYPQMENAL-------------ITVTTA 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  +  +         RQ  + I++        + +  ++  
Sbjct: 51  YPGANAETIQGYITQPMQQSLASAEGIDYMTSVSRQNFSVISVYARIGSNSDRLFTELLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               V ++L  D +  +L        +++       ++ +   + +  + R    ++   
Sbjct: 111 KANEVKNQLPQDAEDPVLSREAADASALMYISFFSKELNN--PQITDYLSRVIQPKLATL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +       +  +    DP +L     T A ++      N           ++  S 
Sbjct: 169 PGMAEAEILGNQVFAMRLWLDPVKLAGFGLTAADVTNAVRQHNFLSAAGEVKGEYVVTSI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                ++                           I     G  R        +       
Sbjct: 229 NANTELKSAEAFGA--------------------IPLKTDGDSRVLLRDVARVEMGAENY 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +    I+    +   + A         +          
Sbjct: 269 DSISSFGGTPSVYIGIKATPGANPLDVIKEVRKIMPDVEAQLPANLKAEIAYDATLFIQA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V++V+F+ +   +  ++   +I L++I  +  + L+G ++ L ++
Sbjct: 329 SIDEVVKTLFEAVLIVIVVVFLFLGALRSVIIPVVTIPLSMIGVMFFMQLMGYSMNLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E I     + ++   +   G       +    IT       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENIHRHIEEGKTPLDAAIEGAREIAMPVVSMTITLAAVYAPI 448

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLS 529
                  G   + FA+T+  +++IS   A+++   M   ++R+ +        +D+    
Sbjct: 449 GLLQGLTGALFKEFALTLAGAVVISGIVALTLSPMMCAMLLRHDENPSGLAHRLDMVFER 508

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +           V   I+  +  + ++FT       + +G I +   A +P 
Sbjct: 509 LKSRYQRMLHGTLNTRPVVLVFAVIVLLLIPVLIMFTKSELAPDEDQGIIFMMASAPQPT 568

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNF 617
           +L  + +  +        F  +      
Sbjct: 569 NLDYLNTYTDHFITIFKEFPEYYSSFQI 596



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 57/147 (38%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +  + T+ L +   + F  L G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 LRSVIIPVVTIPLSMIGVMFFMQLMGYSMNLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                 +  D   +   E     V  ++       P+ +     G++   FA+ +A  +V
Sbjct: 412 HIEEGKTPLDAAIEGAREIAMPVVSMTITLAAVYAPIGLLQGLTGALFKEFALTLAGAVV 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ ++  +   +       + +
Sbjct: 472 ISGIVALTLSPMMCAMLLRHDENPSGL 498



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 61/156 (39%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  ALALAIIFLVLAAQFESFRDPLVILVTVPLSICGALIPLFLGWSSMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N      +++ R+ ++++ +  L   + T+ A    ++P+      
Sbjct: 911  ISKHGILIVE--FANQLRREQNLTPREAVEQAASTRLRPVLMTTAAMVFGMVPLIFATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G          +A G+ +    ++F+   +   +  
Sbjct: 969  GAVSRFDIGTVIATGMSIGTLFTLFVLPCVYTLLAK 1004


>gi|289704792|ref|ZP_06501213.1| putative bacteriochlorophyll 4-vinyl reductase [Micrococcus luteus
           SK58]
 gi|289558508|gb|EFD51778.1| putative bacteriochlorophyll 4-vinyl reductase [Micrococcus luteus
           SK58]
          Length = 1083

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/515 (12%), Positives = 143/515 (27%), Gaps = 40/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + ++   I   G+L A             P                    +     
Sbjct: 11  RRALVALVTVFIAVFGVLSAGQLKRELIPPLELPVIS--------------VSTLYPGAS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V+  +    +     ++       + +   N + L FA          +V   +  +
Sbjct: 57  PEVVDAQVGEPLETALQAVEGLESSRSTSQSGFNAVQLEFAYGTDLNRARSQVDRVVANL 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  + +       +  +  +V    + D+ ++    ++ +++     ++   +    
Sbjct: 117 GPQLPEEAET-SSFAGSVSDFPVVFLALSGDEDLNTLRRRAEDVL---APRLQKIDGVRG 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP+ L     TT+ ++                             
Sbjct: 173 ADVLGGTDENVSVVPDPAALTAAGLTTSDITDALEENAGLFPVGQVTEGATTYPVQAGAA 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           VED   + G                    +                ++    A       
Sbjct: 233 VEDLEGLRG-------------------IVVAPSGDGEPRTLDEVADVTLVAAAPTSLTR 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +           E        L +         V          S    
Sbjct: 274 TDGVPTLSVSVTATPDADLVAVSEAVRDALPELASVVGGGADLTVVFDQAPFIQQSIDTL 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +     ++V+ + +L  +  LV   SI L+++  L  ++  G +L   ++  + +
Sbjct: 334 FQEGLLGLAFAVLVIAVFLLSVRSTLVTAVSIPLSLLAALIGVAAFGYSLNTLTLGALTI 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG  VD  I+V E IR           ++  G     + I  S + ++   + + F G 
Sbjct: 394 SIGRVVDDAIVVVENIRRHLGLGADRRTAILDGTREVATAITASTLVSVAVFLPIAFVGG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA+T  +++L S+  A++IV  +  + 
Sbjct: 454 LAGELFRPFAVTATVALLASLVVALTIVPVLCWWF 488



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 92/266 (34%), Gaps = 17/266 (6%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G   + V  +   +   +    +   +          +    + +            V 
Sbjct: 237 EGLRGIVVAPSGDGEPRTLDEVADVTLVAAAPTSLTRTDGVPTLSVSVTATPDADLVAVS 296

Query: 636 EMVKKKITEIVPL-------STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
           E V+  + E+  +       + + +      +    L ++G++G+  + + + +++    
Sbjct: 297 EAVRDALPELASVVGGGADLTVVFDQAPFIQQSIDTLFQEGLLGLAFAVLVIAVFLL--- 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ L +   L   A FG   N   + A+   IG  V+D +VV + +R   
Sbjct: 354 SVRSTLVTAVSIPLSLLAALIGVAAFGYSLNTLTLGALTISIGRVVDDAIVVVENIR--- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +        R  I     E       +++ +    LP+A  G   G +   FA+     +
Sbjct: 411 RHLGLGADRRTAILDGTREVATAITASTLVSVAVFLPIAFVGGLAGELFRPFAVTATVAL 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           + +   ++ I  P+L + +    +  
Sbjct: 471 LASLVVALTIV-PVLCWWFLRAPRRG 495



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 70/208 (33%), Gaps = 5/208 (2%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                         +     D      V   V + + E+     +        +   +  
Sbjct: 794 VPARVTSSNGERTAVVTVTPDDEDLGAVSRRVTQAVAELDLPEGVTAAVGGAAEQQAQTF 853

Query: 667 RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           R   + ++ +   + + +   F      L  + ++    T         G    L+ +  
Sbjct: 854 RDLGLALLAAVATVYVVMVATFNSLRQPLVLLVSIPFAATGVFLALLATGTPLGLSTMIG 913

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +L L+G  V + +V+ D +  N       ++  + I+      +   V T++A  +++ P
Sbjct: 914 LLMLVGIVVTNAIVLIDLI--NQYRRDRGMTLDEAIEVGALNRVRPVVMTALATVLAMTP 971

Query: 786 MAVWGGSVIGSF-AIPMAFGIVVAASSS 812
           MA  G +    F + P+A  +V    SS
Sbjct: 972 MA-LGITGHAGFISQPLAVAVVGGLVSS 998


>gi|237752082|ref|ZP_04582562.1| export protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229376649|gb|EEO26740.1| export protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 525

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 154/540 (28%), Positives = 268/540 (49%), Gaps = 37/540 (6%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            ++ + +    G+ +++P+               +  ++L          +L V  +D +
Sbjct: 8   KLLFFVIATLFGIALSVPSIFQTQGPKITLGLDLQGGLNL----------LLGVKTEDAI 57

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
                  + ++  +   E I +  +   +N ++    DS  K  +   +           
Sbjct: 58  KTRYGSLASQINYYALDEQILLDGLNARENSVSFELLDSNEKVKVDAYLKTI-------- 109

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                  L V       +I  ++  I  + + AIEQ++  IR R+DQ G+SE ++ + G 
Sbjct: 110 -----PGLNVAENHLNYTISFTETEIMNLKNFAIEQAIGNIRNRLDQFGLSEPSVTKQGE 164

Query: 187 HRILIQLPGEQDPSRLRQLL-----------GTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
             IL+QLPG +     ++ L               +    +V      +   +G   L  
Sbjct: 165 DAILVQLPGIKTQEEEQRALELISKGGHLQMMAVDEARNARVSSMTDLEAQSYGDVILPF 224

Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            D +  + L++    + G  L  A A +D    +PV++ + +  G + F + +  N+G  
Sbjct: 225 VDDEKQKILLKAIPILDGAMLTDARAAYDQNG-QPVINFTLNAQGGKIFGDFSGKNVGNR 283

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +A+VLDG V +APVI + I  G  QISG F+++ A  +A  LR+G+LP  + ++E+R+VG
Sbjct: 284 MAIVLDGEVYSAPVIRERIGGGSGQISGGFSVQQASDIAIALRSGALPAPITLLEKRSVG 343

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG+DSI     A++ G +L+V FM+  YG  G +AD ++ +N++L +A++SL GATLT
Sbjct: 344 PSLGADSIKASMIALITGAILVVAFMVFYYGIAGFIADIAMVVNILLVIAVMSLFGATLT 403

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP +AGI+L +G+AVD+N+++NERIRE  R  ++   SL+ G++ A   IFDSN+T+LIA
Sbjct: 404 LPGMAGIILTVGMAVDANVIINERIREGFRAKENFIKSLENGYANASRAIFDSNLTSLIA 463

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            V+L+  G GA++GFAITM + IL S+ TAI     +   +                   
Sbjct: 464 AVLLYMCGTGAIKGFAITMSIGILASIITAIVGTHGVFRMLQDRIVKSGNYALWFGYKDR 523



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 32/174 (18%), Positives = 79/174 (45%), Gaps = 4/174 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I+  ++ +I  AI ++ ++   +       A   ++++I   +   +LFG
Sbjct: 341 SVGPSLGADSIKASMIALITGAILVVAFMVFYYGI-AGFIADIAMVVNILLVIAVMSLFG 399

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G +V+  V++ +R+R+  +      +F   ++            +
Sbjct: 400 ATLTLPGMAGIILTVGMAVDANVIINERIREGFRA---KENFIKSLENGYANASRAIFDS 456

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           ++ + I+ + + + G   I  FAI M+ GI+ +  ++I     +   + D   K
Sbjct: 457 NLTSLIAAVLLYMCGTGAIKGFAITMSIGILASIITAIVGTHGVFRMLQDRIVK 510


>gi|218532178|ref|YP_002422994.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
 gi|218524481|gb|ACK85066.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
          Length = 1046

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/519 (12%), Positives = 154/519 (29%), Gaps = 35/519 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                + RFP+                  +         +   +  + ++  + +K    
Sbjct: 31  FRALPITRFPNIDIPIV---------SVTVTQSGAAPSELQTQVTKWVEDSVAGVKGVKH 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            + ++ +  +  T+ F     ++   + V   +  +   L     + ++       + I+
Sbjct: 82  ILSTISEGASITTIEFRLEVNQDRAVNDVKDAISKIRINLPRTIDEPIISRVEIAGLPIM 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   +   +     + S  +      Q+   +          +  ++     P RL  L 
Sbjct: 142 IYGASAPAMTPE--DLSWFVDDVVARQLQGVKGVGGVERLGGVAREIRVTLKPDRLLALG 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A ++    L +    G    +     S            +    +            
Sbjct: 200 ITAADVNRQLRLTSADMAGGRGELAGGEQSIRTLGASASLETLGATSIVVP--------- 250

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                      G R+       ++                 +     S     S      
Sbjct: 251 -----------GGRKVRLDELASLMDAAEEPRTFARFNGEPVVGFAISRAMGASDAEVAV 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L A +  ++ ++++   V    G+           A L +IV+F+ +   + 
Sbjct: 300 AVAKRIEDLHAENPGVRFDLIDTSVVNTI-GNYHSAMMGLLEGAALAVIVVFLFLRDWRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+A  ++ L+V+ T  ++S LG +L   S+  I L  G+ VD  I+  E I    R  +
Sbjct: 359 TLIAAVALPLSVLPTFWVMSALGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHMRMGK 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTA 503
           S + +           +     T +     + F     G   + F +T+  ++ +S+  A
Sbjct: 419 SAYRAALEAADEIGLAVIAITATIIAIFAPVSFMPGIAGQYFKQFGLTIAAAVFVSLLVA 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             I   +  + +R           + R +      +++ 
Sbjct: 479 RLITPLLAAYFLRDHGPDHEREGLVMRAYTRLVAWSVRH 517



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 82/224 (36%), Gaps = 7/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V ++     S A   ++E V            +   +    ++  E+     + +
Sbjct: 789  DRTVRVAVEGDLQGSDALGSIIEQVMALPAATNLPEGVTIRQTGDAEVMGEVFEGFALAM 848

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L I   +    +F +  ++  V  +L L+G 
Sbjct: 849  GAGLMMVFGVLVLLFGNFLQPLTILFSLPLSIGGAILGLLVFHMPISMPVVIGILMLMGV 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAIEEMA---RGVDRVTAIVDAGRKRARPIVMTTIAMAAGMVPSALALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG      A+ +  G++V+   S+     I L + D      R+
Sbjct: 966  GGEFRAPMAVAVIGGLIVSTGLSLVFVPAIFLLVDDLSRLFVRL 1009



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 75/252 (29%), Gaps = 6/252 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G   + V   R V L  + S +++ +      +            +            + 
Sbjct: 243 GATSIVVPGGRKVRLDELASLMDAAEEPRTFARFNGEPVVGFAISRAMGASDAEVAVAVA 302

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
              + +    P       +              +  +  +A+A+++       W   L A
Sbjct: 303 KRIEDLHAENPGVRFDLIDTSVVNTIGNYHSAMMGLLEGAALAVIVVFLFLRDWRATLIA 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L +  T    +  G   N  ++ A+  + G  V+D +V  + +   ++      S
Sbjct: 363 AVALPLSVLPTFWVMSALGFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHMRMGKS 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                 ++ +E     +  +        P++      G     F + +A  + V+   + 
Sbjct: 420 AYRAALEAADEIGLAVIAITATIIAIFAPVSFMPGIAGQYFKQFGLTIAAAVFVSLLVAR 479

Query: 814 FIAAPILLFIYD 825
            I   +  +   
Sbjct: 480 LITPLLAAYFLR 491


>gi|163853321|ref|YP_001641364.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
 gi|163664926|gb|ABY32293.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
          Length = 1046

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/519 (12%), Positives = 154/519 (29%), Gaps = 35/519 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                + RFP+                  +         +   +  + ++  + +K    
Sbjct: 31  FRALPITRFPNIDIPIV---------SVTVTQSGAAPSELQTQVTKWVEDSVAGVKGVKH 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            + ++ +  +  T+ F     ++   + V   +  +   L     + ++       + I+
Sbjct: 82  ILSTISEGASITTIEFRLEVNQDRAVNDVKDAISKIRINLPRTIDEPIISRVEIAGLPIM 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   +   +     + S  +      Q+   +          +  ++     P RL  L 
Sbjct: 142 IYGASAPAMTPE--DLSWFVDDVVARQLQGVKGVGGVERLGGVAREIRVTLKPDRLLALG 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A ++    L +    G    +     S            +    +            
Sbjct: 200 ITAADVNRQLRLTSADMAGGRGELAGGEQSIRTLGASASLETLGATSIVVP--------- 250

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                      G R+       ++                 +     S     S      
Sbjct: 251 -----------GGRKVRLDELASLMDAAEEPRTFARFNGEPVVGFAISRAMGASDAEVAV 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L A +  ++ ++++   V    G+           A L +IV+F+ +   + 
Sbjct: 300 AVAKRIEDLHAENPGVRFDLIDTSVVNTI-GNYHSAMMGLLEGAALAVIVVFLFLRDWRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+A  ++ L+V+ T  ++S LG +L   S+  I L  G+ VD  I+  E I    R  +
Sbjct: 359 TLIAAVALPLSVLPTFWVMSALGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHMRMGK 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTA 503
           S + +           +     T +     + F     G   + F +T+  ++ +S+  A
Sbjct: 419 SAYRAALEAADEIGLAVIAITATIIAIFAPVSFMPGIAGQYFKQFGLTIAAAVFVSLLVA 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             I   +  + +R           + R +      +++ 
Sbjct: 479 RLITPLLAAYFLRDHGPDHEREGLVMRAYTRLVAWSVRH 517



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 82/224 (36%), Gaps = 7/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V ++     S A   ++E V            +   +    ++  E+     + +
Sbjct: 789  DRTVRVAVEGDLQGSDALGSIIEQVMALPAATNLPEGVTIRQTGDAEVMGEVFEGFALAM 848

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L I   +    +F +  ++  V  +L L+G 
Sbjct: 849  GAGLMMVFGVLVLLFGNFLQPLTILFSLPLSIGGAILGLLVFHMPISMPVVIGILMLMGV 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAIEEMA---RGVDRVTAIVDAGRKRARPIVMTTIAMAAGMVPSALALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG      A+ +  G++V+   S+     I L + D      R+
Sbjct: 966  GGEFRAPMAVAVIGGLIVSTGLSLVFVPAIFLLVDDLSRLFVRL 1009



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 75/252 (29%), Gaps = 6/252 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G   + V   R V L  + S +++ +      +            +            + 
Sbjct: 243 GATSIVVPGGRKVRLDELASLMDAAEEPRTFARFNGEPVVGFAISRAMGASDAEVAVAVA 302

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
              + +    P       +              +  +  +A+A+++       W   L A
Sbjct: 303 KRIEDLHAENPGVRFDLIDTSVVNTIGNYHSAMMGLLEGAALAVIVVFLFLRDWRATLIA 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L +  T    +  G   N  ++ A+  + G  V+D +V  + +   ++      S
Sbjct: 363 AVALPLSVLPTFWVMSALGFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHMRMGKS 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                 ++ +E     +  +        P++      G     F + +A  + V+   + 
Sbjct: 420 AYRAALEAADEIGLAVIAITATIIAIFAPVSFMPGIAGQYFKQFGLTIAAAVFVSLLVAR 479

Query: 814 FIAAPILLFIYD 825
            I   +  +   
Sbjct: 480 LITPLLAAYFLR 491


>gi|308177131|ref|YP_003916537.1| drug exporter of the RND superfamily [Arthrobacter arilaitensis
           Re117]
 gi|307744594|emb|CBT75566.1| putative drug exporter of the RND superfamily [Arthrobacter
           arilaitensis Re117]
          Length = 1125

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/675 (9%), Positives = 188/675 (27%), Gaps = 46/675 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + ++       G++              FP                        
Sbjct: 9   LKNRALIALITVFAAIFGVISMGSLKQELIPALEFPQIS--------------VMATQMG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + ++  +    +     ++         +    +I L+F      +    +V   + 
Sbjct: 55  SSPEVIDEQVAEPLETALQAVEGLESSSAVSQAGFTRIALTFEYGTDMDRARTQVERAIA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L  D  +      +  +  ++    + DQ      + +  + R  + ++   +  
Sbjct: 115 NSKAQLPEDV-EPTAFAGSIADFPVLALAVSSDQ---SLEQLNDAVERITLPKLQKIDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S      +    +  +++    + A +        +                   
Sbjct: 171 REASVSGGSSQHIAVIPEDDQMQNAGLSVADLKDGIENAGSPMPIGNM------------ 218

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++ G+ L     +               + G           +          
Sbjct: 219 -------DVDGLELPVIAGSTPDTLDAIKQIPLITDNGPVLLQ--DVAKVSVQADEATSI 269

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        +                + A L A                    S  
Sbjct: 270 TRTNGEETLSIQVTKTPDGDTVAISHAVTAMIADLEAELGHKATITTVFDQAPFIEDSIK 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A+  G  +I++ + +   +  LV   SI L+++ T   +++ G TL + ++  +
Sbjct: 330 HLALEGALGLGFAVIIILVFLFSVRSTLVTAISIPLSLMATFIGMNVFGYTLNMLTLGAL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD +I+V E I+      +S   S+ +        I  + +T +   + +   
Sbjct: 390 TISIGRVVDDSIVVIENIKRHLAHGESKAQSILLAVKEVAGAITAATLTTVAVFLPIALV 449

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM----KSIDINPLSRFFL 533
           GG        FA+TM +++L S+  +++IV  +  + + ++      K++ +     +  
Sbjct: 450 GGMAGELFSPFALTMTIALLASLLVSLTIVPVLAYWFLPHRPGSGETKTVHVAEDKSWLQ 509

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                 ++  +       ++ +  +     +        +   G   + + A  P   ++
Sbjct: 510 RAYVPVLKKTQKHPVITLLASVLILAGTVAMTPLLNTNLLGSTGENSISITAEMPSGTAM 569

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
             +  E+ +I     +    E   +         ++  +         IT          
Sbjct: 570 ETTEKEAAKIEAKLAEIDGIEDVQMTVGSASGMAAMFSSGSDTASFTVITNADEDQESLT 629

Query: 654 TEIVGPKISRELIRK 668
             +       +L + 
Sbjct: 630 NTVREQVEGLDLAKD 644



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 78/226 (34%), Gaps = 9/226 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +  N PV L  V              +    E   +   +   GD+VA +  +  +   +
Sbjct: 245 ITDNGPVLLQDVAKVSVQADEATSITRTNGEETLSIQVTKTPDGDTVAISHAVTAMIADL 304

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIV--GVIISAIAMLIYIWIRFKWYFALGAITTL 700
              +       T         + I+   +   + +    ++I +   F     L    ++
Sbjct: 305 EAELGHKATITTVFDQAPFIEDSIKHLALEGALGLGFAVIIILV-FLFSVRSTLVTAISI 363

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +  T     +FG   N+  + A+   IG  V+D +VV + ++   +      S    
Sbjct: 364 PLSLMATFIGMNVFGYTLNMLTLGALTISIGRVVDDSIVVIENIK---RHLAHGESKAQS 420

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
           I  ++ E  G     ++      LP+A+ G   G +   FA+ M  
Sbjct: 421 ILLAVKEVAGAITAATLTTVAVFLPIALVGGMAGELFSPFALTMTI 466



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 82/240 (34%), Gaps = 9/240 (3%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +        Q         +              V   V +++  +              
Sbjct: 780  ATVERANVVQQVTTSNGERIATLTLTPAENMLGAVSASVTERLESVQLPEGATAELGGAA 839

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
                E   +  + ++ +   + + +   F      L  + ++    T  +G   + GI  
Sbjct: 840  TEQAESFNQLYLALLAAIAIVYVIMVATFKSLIQPLVLLVSIPFAATGAIGLLLISGIPL 899

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             L ++  +L L+G  V + +V+ D +   R++      +++  + I +   + L   + T
Sbjct: 900  GLPSLIGMLMLVGIVVTNAIVLIDLINQYREDTPE-RPAMALEEAIMQGARQRLRPILMT 958

Query: 776  SMAAFISVLPM---AVWGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++A   +++PM          I    A+ +  G+V +   ++ +   +   +   + KNA
Sbjct: 959  ALATIFALVPMGLGLTGQSGFISQPLAVVVIGGLVSSTLLTLILVPVLYRLVESRKEKNA 1018


>gi|260221603|emb|CBA30332.1| Multidrug resistance protein mdtC [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 1029

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/657 (12%), Positives = 171/657 (26%), Gaps = 38/657 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I   G++           +   PS      I+            L   
Sbjct: 9   RRPVMTVLLNLAIVMAGVI-----GFRSIPVSALPSYDTP-VIN--------VSAALPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   + +  ++    +        +       +TL F +SR  +  A  V   L  
Sbjct: 55  SPETMATSVALPLEKQFQTVPGLKTISSTSTLGSTSLTLEFEESRNIDAAAVDVQAALLR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D              + VL    +        E         +  +   +   
Sbjct: 115 AQRSLPSDMTNPPSYRKVNPADAPVLL-VALQSPSLSPAELQDYAEHLIVPTLSTVDGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +     P  L        ++S      N +                   
Sbjct: 174 QVNVFGAKRYAVRVRVKPDALAVRNIGLDEISAALKAANVNTPVGTLEGPKQTLVLQANK 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                      D+     G          N+   L  +    
Sbjct: 234 QLRSAAEF--------------------ADLIVSTKGGNPVRLRDVANVEDSLETLKSWA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    +++       L++                +   +   
Sbjct: 274 TLNGEPSITLAVQRQPGANTVRVVDSIRAALPGLQSQMPASVKMTPVNDRSLSVREALHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV++V+F+ +      ++   S+ +++I  +ALL  L  +L   S+ G+ 
Sbjct: 334 VTLTLIGTIALVVLVIFLFLRRFVATVIPTLSLPVSLIGAVALLWGLNYSLDNISLLGLT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E I       ++ F +   G      TI   +++ +   + +FF  
Sbjct: 394 LAVGLVVDDAIVVLENIIRHVENGENSFQAALRGAREVGFTIISISVSLIAVFIPIFFMP 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G        FA+ + LSI++S F ++++V  +    ++ +         +  F    +  
Sbjct: 454 GVIGLLFHEFAVVVALSIVVSAFVSLTLVPMLASRFLKDEAHMKPPGVVVRSFERAFNAT 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              + R     +    +    +I           +  KG      +    V         
Sbjct: 514 LAGYTRMLDLALAHRYVILGVAISTFVATAWLLQVIPKGFFPEEDIGQIQVTTEAAEDTS 573

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
               +           K+  V +               M      +       +  E
Sbjct: 574 FPAMVALQERAAEIIRKDPNVAVVSSFNGGNGAQNSGRMFVTLKPQGEREPMKKVVE 630



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 71/217 (32%), Gaps = 6/217 (2%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            +  N +      V+ Q           +   +    +++     +         +   L
Sbjct: 272 WATLNGEPSITLAVQRQPGANTVRVVDSIRAALPGLQSQMPASVKMTPVNDRSLSVREAL 331

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
               +  +   A+ +L+      ++   +    +L + +   +          +  ++  
Sbjct: 332 HDVTLTLIGTIALVVLVIFLFLRRFVATVIPTLSLPVSLIGAVALLWGLNYSLDNISLLG 391

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  V+D +VV + +   ++      +      +   E     +  S++     +P
Sbjct: 392 LTLAVGLVVDDAIVVLENI---IRHVENGENSFQAALRGAREVGFTIISISVSLIAVFIP 448

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    G +      FA+ +A  IVV+A  S+ +   +
Sbjct: 449 IFFMPGVIGLLFHEFAVVVALSIVVSAFVSLTLVPML 485



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 72/186 (38%), Gaps = 8/186 (4%)

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDI 704
               +      G   +     +G   +++ A  ++IY+ +      +   +  +  L    
Sbjct: 831  QMPVSIISTYGGDAAVFKNSQGSQAILVIAALLVIYVLLGVLYESYIHPITILVGLPSAA 890

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
            T  L    +F  +  L A   ++ LIG    + +++ D      +     ++  + I ++
Sbjct: 891  TGALATLMIFDQDLTLIATIGLVLLIGIVKKNAIMMIDFALDAQRH--QGMTPAEAIREA 948

Query: 765  INETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                    + T++AA +  LP+A+    G  +     + +  G++ + + ++FI   + L
Sbjct: 949  CILRFRPIMMTTLAALMGALPIALGLGAGAELRQPLGLAVVGGLIFSQAITLFITPVLYL 1008

Query: 822  FIYDWR 827
             +  + 
Sbjct: 1009 MLERFS 1014


>gi|308125461|ref|ZP_05775429.2| protein-export membrane protein SecD [Vibrio parahaemolyticus
           K5030]
 gi|308113365|gb|EFO50905.1| protein-export membrane protein SecD [Vibrio parahaemolyticus
           K5030]
          Length = 413

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 130/402 (32%), Positives = 227/402 (56%), Gaps = 14/402 (3%)

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
           +  ++ +   +  S+ NI +  S  ++Q+++I+R RI+++GI+E+ +QR G   I I+LP
Sbjct: 13  ISKSSSRGFVLEPSEQNIQEFQSSTLQQNLKIMRGRIEELGITEALVQRQGKESIRIELP 72

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           G QDP++ + ++G TA ++F++V    + +        L+D+DG   ++  +  ++G H+
Sbjct: 73  GVQDPAQAKNVIGATASLAFYEVKD--ASQAHSSQDLVLQDNDGRTVILAKRPVLTGEHI 130

Query: 255 NGATANFDPKTHKPVVDISFDEMG-----------ARRFFEVTRDNIGKPLAVVLDGRVL 303
             A A  D      V        G            +    V R+       V      +
Sbjct: 131 VNARAGVDKMGMSEVNISLDHAGGKKMSDFSATHIGKPMATVYREYKTNDRGVTERSERV 190

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
            +    Q+    + +I+G  +++ A  LA +LRAGSL   + IVEER +GA LG+++I  
Sbjct: 191 ISVATIQSQLGSQFRITGAGSMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIEN 250

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVL 422
           G  A+  G+ L + FM + Y + G VA+ ++  N++  L L++LL  A LTLP IAG+VL
Sbjct: 251 GFAALALGMGLTLTFMALWYRRLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVL 310

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+AVD+N+++ ERI+++ R+ +S   ++D+GF  A+STI D+NIT +I  V+L+  G 
Sbjct: 311 TVGMAVDTNVIIFERIKDKMREGRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGN 370

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           G ++GFA+T+GL +L SMFT +   RAM+  I      + + 
Sbjct: 371 GPIQGFALTLGLGLLTSMFTGVFASRAMINLIWGRDARRDVR 412



 Score =  105 bits (261), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 80/203 (39%), Gaps = 5/203 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +  +   +    TI     +G  +  E I  G   + +     L ++ + +
Sbjct: 211 SMDDAQQLALLLRAGSLTAPVTIVEERTIGASLGAENIENGFAALALGMGLTLTFMALWY 270

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +      A   L  ++   LG  AL  G    L  +A ++  +G +V+  V++++R++  
Sbjct: 271 R-RLGWVANVALCANMLCLLGLIALLPGAVLTLPGIAGLVLTVGMAVDTNVIIFERIKDK 329

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           M+      SF   ID   +      +  ++   I+ + +   G   I  FA+ +  G++ 
Sbjct: 330 MRE---GRSFAQAIDLGFDSAFSTILDANITTMITAVILYAIGNGPIQGFALTLGLGLLT 386

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           +  + +F +  ++  I+   A+ 
Sbjct: 387 SMFTGVFASRAMINLIWGRDARR 409


>gi|148254196|ref|YP_001238781.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           BTAi1]
 gi|146406369|gb|ABQ34875.1| putative multidrug efflux transporter (RND family,AcrB/AcrD/AcrF
           family) [Bradyrhizobium sp. BTAi1]
          Length = 1026

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 73/573 (12%), Positives = 169/573 (29%), Gaps = 39/573 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  +GL       + Q    +  + +  +    G D            
Sbjct: 9   RRPVLALVVSALILVLGLRSMTTLSILQYPRTQN-AIVTVSTAYAGAD------------ 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    +   +          +     + IT++   +        ++   +  
Sbjct: 56  -SDIIAGFITTPLENAIAQANGIDYMTSTSVTGSSTITVNLRLNYDSGKAMTEINAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++  L     + I  +      D  +    + +  + R    ++       
Sbjct: 115 VLNQLPTGTQQPTLTLKVGQTIDAMYIGFASD--VLAPNQITDYLTRVVQPKLQAVSGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP +L     T   +S                        GN Y
Sbjct: 173 TAELIGAKKFALRAWLDPDKLAAYGLTATDVSTAL--------------------SGNDY 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +         +      A  +  + +   ++   ++           ++           
Sbjct: 213 ISGLGTTKGRLVQVDLAAATNLHSLEQYRNLVVKQVNGAIIRLRDVASVTLGNDDYDTAT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    I     +   L+        + +   +      S   
Sbjct: 273 RFNGKTAVYIGIQVAPTANLLDVINGVKAVFPDLQQQLPNGIRSEIIYDSTDFVNSSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T     G+V++V+FM +   +  L+   +I L++I T  L+ L+G ++ L ++  +V
Sbjct: 333 VEHTLVEAIGIVIVVVFMFLGSWRSVLIPVIAIPLSLIGTFGLMLLMGFSINLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     +  S   +         S I    +  +   V + F G
Sbjct: 393 LAIGLVVDDAIIVVEAVHRLIDEGVSPVEAAIQSARALASPIIAMTVVLIAVYVPVGFQG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA T+  ++ +S   A+++      +++R  +  S  +       +     
Sbjct: 453 GLTGALFTEFAFTLAGAVTVSAVIALTLSPMNCAWLLRRTERGSTTLEARLVRAIDHVLE 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
            +     R      S    +     L    + +
Sbjct: 513 RLAHAYRRCLESVFSTKPVVVVFAFLLLAMIPW 545



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 78/204 (38%), Gaps = 9/204 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                V   +++++   +    I ++         E+    +  + I  + + +++    
Sbjct: 297 NGVKAVFPDLQQQLPNGIRSEIIYDSTDFVNSSIDEVEHTLVEAIGIVIVVVFMFLG--- 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +  + L +  T G   L G   NL  + A++  IG  V+D ++V + +    
Sbjct: 354 SWRSVLIPVIAIPLSLIGTFGLMLLMGFSINLLTLLALVLAIGLVVDDAIIVVEAVH--- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +L    +S  +   +S        +  ++      +P+   G   G++   FA  +A  +
Sbjct: 411 RLIDEGVSPVEAAIQSARALASPIIAMTVVLIAVYVPVGFQGGLTGALFTEFAFTLAGAV 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829
            V+A  ++ ++     ++     +
Sbjct: 471 TVSAVIALTLSPMNCAWLLRRTER 494



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 61/159 (38%), Gaps = 9/159 (5%)

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLI 730
            + + I + + +   F  +   +  + ++ + +   L F +L   G   N+     ++TL+
Sbjct: 853  VFALIIIFLALAALFNSFVDPIIILVSVPMSLAGALIFISLGIGGASINIYTQVGLVTLM 912

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA-VW 789
            G      +++ +   +   L        + I ++    L   + T+ A  + V+P+    
Sbjct: 913  GLVSKHGILMVEVANE---LREQGKDRTEAIIEAATIRLRPILMTTAAMVLGVIPLITAS 969

Query: 790  GGSVIGSF--AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G   +  F   + +A G+ +    ++F+       I   
Sbjct: 970  GAGAVSRFNMGLVIATGLSIGTLFTLFVVPVAYALIAHR 1008


>gi|294663950|ref|ZP_06729374.1| transport protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
 gi|292606281|gb|EFF49508.1| transport protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 10535]
          Length = 1028

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 85/646 (13%), Positives = 187/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATADGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V      D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AVRDDFPEDLQRFQVFKWSSSDEPVLKVRLASQTDLTGAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S                         N 
Sbjct: 172 AKVEISGAPPNEVEIAIAPDRLTAHDLSLNDLSERL-------------------GKLNF 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +   +++ +G  +            +    +      A+         +      +  G
Sbjct: 213 SVSAGQIDDNGQRIRVQPIGELRDLQELRELVL----NAKGVRLGDIAQVRLKPTRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +     + A      +RA      + +    N   A   S 
Sbjct: 269 RRLDGRPAIGLDVYKERSANLVEVSKAALKEVEDIRAQPAMRDVQVKVIDNQGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 AELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPDQPQRAALLGTRSVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     + S            
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTSERGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G D      +            +
Sbjct: 509 AQVLAWTLAHRGWSVAGIILVSAISLVPMKLTKIDMFGGDGGNEAFIQYQWKGSYTREQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +                G +   T     VK 
Sbjct: 569 GEEIGRVENYLEANRAKYHITQIYSWFSEVEGSNTVVTFDASKVKD 614



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 86/237 (36%), Gaps = 11/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI-VPLSTIQNTE 655
            +L  +QI   + Q     +   + ++    + V        ++  +  +  P       +
Sbjct: 768  SLVEVQIRPAATQIGRTNRQTTLTIKANLAEKVTVPEARAAMEAPLKAMRFPAGYSYTFD 827

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E + + +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 828  GGDYQNDGEAMGQMVFNLVIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 887

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +     L    +     + +   E L   + 
Sbjct: 888  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN---NLRRRGMGRTQALVEGSRERLRPIMM 944

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T   A ++++P+          G      A  +A G+  +   S+     I   + D
Sbjct: 945  TMGTAILAMVPISLTSTTMFSDGPPYFPMARAIAGGLAFSTVVSLLFLPTIYAILDD 1001



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +    +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDIRAQPAMRDVQVKVIDNQGKAVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPDQPQ-----RAALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|92117591|ref|YP_577320.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
 gi|91800485|gb|ABE62860.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
          Length = 1032

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/519 (12%), Positives = 146/519 (28%), Gaps = 38/519 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  IG++           +   P+      I +  +  G         
Sbjct: 10  RRPVGTTLLAIGLFLIGVVA-----YGFLPVASVPNVDFPM-IRVSANRPG--------A 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +       I L FA  R  ++ A  V   +  
Sbjct: 56  APSVMAATVAAPLERRLGEIAGVDQITSTSTLGATSIQLRFAIGRDIDHAARDVQAAINA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D              + V     +                  + +I       
Sbjct: 116 SLADLPTDLPTLPKFRKANPAAAPVFI-LALTSKTMSTSAIYDVADTVIVQRISQVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S      +    +P  L     +T  +    V  N      +F             
Sbjct: 175 EVSVSGADQPAVRIALNPVALSNAGISTDDVRTAIVNANPLGPVGIFN------------ 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G      + N   +T     DI     G          ++           
Sbjct: 223 --------GGRQSETLSTNRQMRTAAEFRDIVIKSSGGNFVQLSDVADVKDATRNSRSIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +   T++    +   L+                G+   S   
Sbjct: 275 WFNKQPAVLIQITKQGDANVIDTVDRVKAIIPELKQWIPAGVEISTLVDRTGSIRASVDD 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A LV++V++  +      + A  S+ L +  T A + L G ++   S+  + 
Sbjct: 335 MEWTLLATAFLVMVVVYAFLRRFTPTVAAGVSVPLALAGTCAGMWLAGFSIDNLSLMALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E +     +    + +   G  +   T+   +++ + A   L F  
Sbjct: 395 ISVGFVVDDAIVMIENMYRNLEQGLPPYRAALEGAKQIGFTVLSISLSLIAAFTPLIFMD 454

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           G     +R F++T+  +I++S   ++++   +    I++
Sbjct: 455 GMVGRLLREFSLTLTFAIVVSTVVSLTVTPMICAHYIKH 493



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 79/257 (30%), Gaps = 13/257 (5%)

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            S   S            +  I   GG  + +     V  +   S   +      +    
Sbjct: 226 QSETLSTNRQMRTAAEFRDIVIKSSGGNFVQLSDVADVKDATRNSRSIAWFNKQPAVLIQ 285

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
             ++     +            + + +   +     +    +       +   L      
Sbjct: 286 ITKQGDANVIDTVDRVKAIIPELKQWIPAGVEISTLVDRTGSIRASVDDMEWTL------ 339

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +  + + M++      ++   + A  ++ L +  T     L G   +  ++ A+   +G
Sbjct: 340 -LATAFLVMVVVYAFLRRFTPTVAAGVSVPLALAGTCAGMWLAGFSIDNLSLMALAISVG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           + V+D +V+ + M +N+      +       +   +     +  S++   +  P+    G
Sbjct: 399 FVVDDAIVMIENMYRNL---EQGLPPYRAALEGAKQIGFTVLSISLSLIAAFTPLIFMDG 455

Query: 792 SV---IGSFAIPMAFGI 805
            V   +  F++ + F I
Sbjct: 456 MVGRLLREFSLTLTFAI 472



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 84/223 (37%), Gaps = 6/223 (2%)

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
            +  +    V + +     V        +++ + E+     I+ +        R+   +  
Sbjct: 801  YHSQSFPSVTVSFNTLPDVELQEATSNIQRAVDELHMPEGIRGSFEGNAADFRKTSGRQP 860

Query: 671  VGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++ + +A+ I + + ++     L  I+TL       L    +      + A   ++ L
Sbjct: 861  LLILGALVAVYIVLGVLYESLAHPLTIISTLPSAGLGALLALQITNTSLTIIAFVGIILL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ D            +S  D I ++ +      + T+MAA  + +P+ + 
Sbjct: 921  IGIVKKNGIMIVDFALD--AERQRGLSSTDAIFEACSVRFRPILMTTMAAIFAAIPLVLA 978

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G  +     I +  G++V+   +++    I L I   R +
Sbjct: 979  TGPGTELRRPLGITIIGGLLVSQVLTLYTTPVIYLLIDRLRRR 1021


>gi|194332865|ref|YP_002014725.1| preprotein translocase subunit SecD [Prosthecochloris aestuarii DSM
           271]
 gi|194310683|gb|ACF45078.1| protein-export membrane protein SecD [Prosthecochloris aestuarii
           DSM 271]
          Length = 594

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 31/175 (17%), Positives = 74/175 (42%), Gaps = 4/175 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR G++        + +++   ++    + A   L+L+I   L   A FG  
Sbjct: 421 GPSLGADYIRSGLLSSSWGLSIVAVFMIFYYR-KAGVSADIALVLNILFVLSVLAGFGAA 479

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++++R+R+ +       + R  +D   ++     + + +
Sbjct: 480 LTLPGIAGLVLTIGMAVDANVLIFERIREELMEKK---NLRVAVDTGYSKAFSAIIDSQI 536

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               +   + V+G   I  FAI +  G   +  +++ +   I   +        +
Sbjct: 537 TTLGAAFLLYVYGIGPIQGFAITLMIGTAASLFTALVVTKSIFDLLISKNLMTEK 591



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 55/238 (23%), Positives = 88/238 (36%), Gaps = 43/238 (18%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQS-------------------MLDRFPSAMPK 41
           M+NN +  IL   +  + L    P +   S                      +      +
Sbjct: 1   MKNNRFTGILIVALTALALWSLWPTYQQYSFNKKLEPLTTAEDSLKFIQEHRQAIDNATE 60

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
             + LGLDL+GG +LVLEVD  D +           R  L         +          
Sbjct: 61  KSLKLGLDLKGGMYLVLEVDLIDLIEQRAWNKDQTFRDMLASVNEKASGVNTG------- 113

Query: 102 FADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                        + L             +    V  +++E+ + L +         A+ 
Sbjct: 114 ------------IIDLLAAEFRDSGIRMSRYFYDVRDSDEEVIVKLRKEA-----EEALA 156

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           ++ E+IR R+DQ G++E  IQ  G+ RI++ LPG  D  R+R+LL  TAK+ F  V  
Sbjct: 157 RAREVIRNRVDQYGVAEPVIQTQGARRIIVALPGVSDQERVRKLLKGTAKLEFKLVRD 214


>gi|73661622|ref|YP_300403.1| RND superfamily drug exporter [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494137|dbj|BAE17458.1| putative drug exporter of the RND superfamily [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 836

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 77/582 (13%), Positives = 190/582 (32%), Gaps = 61/582 (10%)

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 I++   +  A I+ + +  +            +    +    +      G ++ 
Sbjct: 113 PYENRQISKDKTTAFADINYDISATSMTQDGKDNVQDKVDKLEDDHNVQVELMGTGMENT 172

Query: 362 YKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA- 418
             G  + + G+++  +VL +         +   S  L +   + ++SLL     +P++  
Sbjct: 173 EIGGSSELIGIIVAFVVLLITFGSFIAAGMPIISALLGLGTGVGIISLLTYAFDIPNVTL 232

Query: 419 --GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              +++G+ + +D  + +  R R+  +   +   ++ +    A S +  + +T +IA   
Sbjct: 233 TLAVMIGLAVGIDYALFILFRYRQIVKTESNHIKAVGLAVGTAGSAVIFAGVTVIIAVCG 292

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           L   G   +        +S+L+++ +A++++ A++    +  K K       +       
Sbjct: 293 LSLVGIDFLAIMGYASAISVLVAVISALTLLPALISIFHKQIKPKKTKSEFDNDVDTKWS 352

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF---KGGIQLGVLANRPV---- 589
              +    A      I ++ +   I  +     + G+            +++++      
Sbjct: 353 KFVVGKPLAAVLIGLIILVVAAIPISNMRLGIPDDGMKPADSTQKKAYDIVSDKFGEGYN 412

Query: 590 ---------------------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                                DL  +  +++     D+       +      +   P   
Sbjct: 413 GQIAMLVNVKDKNDNPQALQKDLQDMTKDIDKKDNVDMVTPPQLSKNKDYALIAVIPEKG 472

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---------IVGVIISAIA 679
                  ++V                +      S   I              GVI++   
Sbjct: 473 PNAESTNDLVHDLRDYNDDAKDKYGFKTEVSGQSVINIDMSQKLNEAIPLFAGVIVALAF 532

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGF----------FALFGIEFNLT-----AVA 724
           +L+ I  R      L A+   +L +  TLGF            LFG++          V 
Sbjct: 533 ILLMIVFR-SIIIPLKAVLGFVLSLVATLGFTTLIMQEGFMSGLFGVDTTGPLLAFLPVI 591

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            +  L G +++ +V +  R+ +    Y+ + +    I   I E+    V  ++  F   +
Sbjct: 592 TIGLLFGLAMDYEVFLMSRIHEE---YSKTRNNEHSIKVGIKESGPVVVAAALIMFSVFI 648

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                   +I S  I + FG++  A     +  P L  ++  
Sbjct: 649 AFVFQDDVMIKSMGIALGFGVLFDAFVVRLLLIPALTQLFGK 690



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 91/261 (34%), Gaps = 7/261 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
             G ++  +  +    L  ++ + + ++     ++N    K+          D  A +  
Sbjct: 81  DNGIVKQDMTKDIKDTLKDIKDDDKDIKNITDPYENRQISKDKTTAFADINYDISATSMT 140

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
            +       ++  L    N ++       E    G    +I  I   + + I F  +  A
Sbjct: 141 QDGKDNVQDKVDKLEDDHNVQVELMGTGMENTEIGGSSELIGIIVAFVVLLITFGSFIAA 200

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNMKL 750
              I + +L +   +G  +L    F++  V   L + IG    ++  + +  R R   ++
Sbjct: 201 GMPIISALLGLGTGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR---QI 257

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
             T  +    +  ++       ++  +   I+V  +++ G   +       A  ++VA  
Sbjct: 258 VKTESNHIKAVGLAVGTAGSAVIFAGVTVIIAVCGLSLVGIDFLAIMGYASAISVLVAVI 317

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
           S++ +   ++   +       
Sbjct: 318 SALTLLPALISIFHKQIKPKK 338


>gi|313205184|ref|YP_004043841.1| acriflavin resistance protein [Paludibacter propionicigenes WB4]
 gi|312444500|gb|ADQ80856.1| acriflavin resistance protein [Paludibacter propionicigenes WB4]
          Length = 1037

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/556 (10%), Positives = 165/556 (29%), Gaps = 42/556 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++++++ +   GL         Q   +  P       I                 
Sbjct: 9   KRPSLIIVIFTALILGGLFS-----YEQLSYELMPPFSIPTLI---------VSTPYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               VN  +    ++  + L +         +  + + + F           +    L  
Sbjct: 55  SPTDVNQTVSKKIEDAVTGLSELSTISSQSYEGMSVVIVEFESGADMGKKQQEAQRILNN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S    + K  ++   ++ +  I+              +    I ++ I Q+   +   
Sbjct: 115 IMSNFPKEVKTPVVSKVSQSDSPILRLTAVSKMGDRDFYDL---IDKEVIPQLKQIDGIS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  I  ++    D ++L     + A+++      N             + +     
Sbjct: 172 NVWLTGGIEREIKVNVDKNKLTSYGISLAQITQVVNSSNLDFPTGKVKDNSDQITVRLGG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 ++S + +                                   +   +       
Sbjct: 232 KFSSVEQLSELVVATHA--------------------GVNIRLKDVAEVIDGVKEQAAIC 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE-ERNVGADLGSDS 360
                       + ++  +     +T     A++        +     E +    L +  
Sbjct: 272 RFNGLEGIGITITKQSDANAVKICQTVKEKIALVAEQHKKEGVIFKVAEDSSELTLEAVD 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +V+ + +   +  L+   +I  ++I T   +   G +L L ++  +
Sbjct: 332 AVSHDLVLAIILVALVILLFLHSLRDSLIVLIAIPTSLISTFVAMYFFGYSLNLMTLLAM 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVL 477
            L IG+ VD +I+V E I       +S   +   G +    +   I   ++   +   ++
Sbjct: 392 SLVIGILVDDSIVVLENIHRHFSMGKSKRQAALDGRNEIGFSALAITMVDVVVFLPIALV 451

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-KSIDINPLSRFFLIPD 536
               G  +R F++T+ +S L+S+F + ++   +     +  ++ +   ++    +F    
Sbjct: 452 DSIIGDILRQFSVTIVVSTLMSLFVSFTLTPFLYSRFGKKVQLVRENWLHRPLYWFDTFI 511

Query: 537 CIAIQFMRARFWGVGI 552
              I F   +   V  
Sbjct: 512 NKTISFYVNKLRWVLN 527



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 90/223 (40%), Gaps = 15/223 (6%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV----I 674
           + +           ++ + VK+KI  +      +       + S EL  + +  V    +
Sbjct: 279 IGITITKQSDANAVKICQTVKEKIALVAEQHKKEGVIFKVAEDSSELTLEAVDAVSHDLV 338

Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           ++ I + + I +       +L  +  +   +  T      FG   NL  + A+  +IG  
Sbjct: 339 LAIILVALVILLFLHSLRDSLIVLIAIPTSLISTFVAMYFFGYSLNLMTLLAMSLVIGIL 398

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG--- 790
           V+D +VV + +    + ++   S R       NE    ++  +M   +  LP+A+     
Sbjct: 399 VDDSIVVLENIH---RHFSMGKSKRQAALDGRNEIGFSALAITMVDVVVFLPIALVDSII 455

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           G ++  F++     IVV+   S+F++  +  F+Y    K  ++
Sbjct: 456 GDILRQFSVT----IVVSTLMSLFVSFTLTPFLYSRFGKKVQL 494



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 93/271 (34%), Gaps = 16/271 (5%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
               + ++   G          + LS   +  +S     +   N          +      
Sbjct: 769  FDRHDMNDVSGFTFVNSKGEKITLSQFATIKQSNGPSMVERTNRRTSVTVKSNVLGITSG 828

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
             +AQ    E+ K    + V +    + E          +      +++  + + +Y    
Sbjct: 829  ILAQQIDEEIAKANFPKSVTIKWSGDVEQQTKSFISLGLALLAAIILVYLVMVALYNSFL 888

Query: 688  --FKWYFAL-GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              F  +F++  A+   +L +  T+G  ++F +   +  +  V      S N  +++ D  
Sbjct: 889  QPFIVFFSVPVALIGALLALNLTMGSMSIFTMLGLIMLLGLV------SKN-GILLVDF- 940

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
                 L    +   D + ++  E L   + T+++    +LP+A+    G       A+ +
Sbjct: 941  --TNHLKEKGMPTYDALLEAGRERLRPILMTTISMVFGMLPIALATGAGAEWKKGLAVVL 998

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G+  +   ++F+     L +   + +  R
Sbjct: 999  IGGLTSSLILTVFVVPMAYLVVEKVQNRFTR 1029


>gi|187250973|ref|YP_001875455.1| protein-export membrane protein SecD [Elusimicrobium minutum
           Pei191]
 gi|186971133|gb|ACC98118.1| Protein-export membrane protein SecD [Elusimicrobium minutum
           Pei191]
          Length = 473

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 118/536 (22%), Positives = 212/536 (39%), Gaps = 83/536 (15%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFL--------PQSMLDRFPSAMPKNRISLGLDLRG 52
           M N   +     ++     +  L             ++ L+      PKN ++LGLDLRG
Sbjct: 1   MSNKVLVKWAVILVALFASVYLLYPVYKWYSLSNEDRAKLEASGD-RPKNILNLGLDLRG 59

Query: 53  GSHLVLEVDE-------DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFAD 104
           GS L+LE+D            N  +    + +R+ + + G+    + +   K I++    
Sbjct: 60  GSSLLLELDVTKLPDNTPAARNDAVSRAIEIIRNRIDQYGVAETPITRQGEKWISVQLPG 119

Query: 105 SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
                     +                           +    S  +         E+  
Sbjct: 120 IANPAQAEALIGKTAMLEFRI-----------------VKPQTSALDKAAAKIEDTEEPW 162

Query: 165 EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK 224
           +     I  +         +  ++       E      +++  T A +   +V       
Sbjct: 163 DEDGNLIPSLAKLLPADTIVLKNKEGGFSFLE------KEVKVTGADLENAQVNVGGDYG 216

Query: 225 GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE 284
                  F  +       +       G  L     N           I+ D   + RF  
Sbjct: 217 YPEVSFTFSAEGAKKFGSLTGSNI--GKQLAIVLDNTVQSAPSIQSRITRDGRISGRFTM 274

Query: 285 VTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
                                                    + A  LA  LRAG+LP  +
Sbjct: 275 -----------------------------------------DEARRLAITLRAGALPAPV 293

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
            I+E+R +G  LG DSI  G  A + G+V+I++ M + Y   G++++ ++ LN++  LA 
Sbjct: 294 KIIEKRTIGPSLGEDSIKSGVRASLYGIVIILILMAIYYKSGGIISNIALILNLVFLLAA 353

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
           ++   ATLT+P IAGI+L + +A+D+N+L+ ER+REE  + +S++  +D+G+++A+S IF
Sbjct: 354 MAAFNATLTMPGIAGIILSLAMAIDANVLILERMREEKLRGRSLYEMIDLGYTKAWSAIF 413

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           DSN T+ I  + LF FG G V+GFA+T+ L +LI +FT++ + RA+   ++     
Sbjct: 414 DSNFTSWIVALFLFQFGSGPVKGFAVTLTLGLLIGVFTSVFVTRAIYDLLLTANPK 469



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 37/226 (16%), Positives = 91/226 (40%), Gaps = 4/226 (1%)

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           D + Q+    ++ + R     G           +  +   +     I     +GP +  +
Sbjct: 249 DNTVQSAPSIQSRITRDGRISGRFTMDEARRLAITLRAGALPAPVKIIEKRTIGPSLGED 308

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            I+ G+   +   + +LI + I +K    + +   LIL++   L   A F     +  +A
Sbjct: 309 SIKSGVRASLYGIVIILILMAIYYKSG-GIISNIALILNLVFLLAAMAAFNATLTMPGIA 367

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++  +  +++  V++ +RMR+         S  ++ID    +       ++  ++I  L
Sbjct: 368 GIILSLAMAIDANVLILERMREE---KLRGRSLYEMIDLGYTKAWSAIFDSNFTSWIVAL 424

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +  +G   +  FA+ +  G+++   +S+F+   I   +     K+
Sbjct: 425 FLFQFGSGPVKGFAVTLTLGLLIGVFTSVFVTRAIYDLLLTANPKD 470


>gi|281358791|ref|ZP_06245266.1| acriflavin resistance protein [Victivallis vadensis ATCC BAA-548]
 gi|281314746|gb|EFA98784.1| acriflavin resistance protein [Victivallis vadensis ATCC BAA-548]
          Length = 1028

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/553 (10%), Positives = 156/553 (28%), Gaps = 38/553 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +  L  ++   GL     +   +  LD FP                    V     
Sbjct: 10  RPIAMTCLIIVLVLFGL-----SSYDKIGLDSFPDVEIPYVT---------VTTVYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++    +        +  +   +I L F      +  A  V   +  V
Sbjct: 56  PAEIEVDVAKRLEDAVGTINGLKTMKTTCMENVCQILLEFQLGESVDIAAMDVRERIDKV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    +   ++        ++      D  I               +++       +
Sbjct: 116 KKDLPAAAEAPEILKFDPNATPVITIMLTGDLPIDS---IYDYADETLANKLSTISGVAE 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +    ++L    D  +L     +  ++       N               +      
Sbjct: 173 VQIAGGEQLELRVTLDTEKLSACGLSVVQVLKKLGDANVKVPVGRIRQGIQEINVTYDSE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +D  ++  + +               + +  +E  +  F++                  
Sbjct: 233 FKDFADLGSLEIGTFQKRRIYLRDVAKISMESEEKRSLAFYDG----------------- 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
               VI + +  G +          A +                    +      S    
Sbjct: 276 -QPGVILKIVKKGDSNAVRVIDSVRAEVERINRDRELPSGMKLQWVRDSGSFIKASVDDA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +  I   L   +LF  +   +   +   S+ ++++++  ++ + G T  + ++  +  
Sbjct: 335 WSSIVIGVILTAAILFAFLHEVRSTFIVAVSMPVSIVVSFWVMQMCGFTFNMFTLLALGT 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G  V ++I+V E I ++  +      + D+G       +F S +T ++    +     
Sbjct: 395 SVGTLVTNSIVVIENIAKKLDQGMDPKTASDIGAGEVAVPVFASAMTNVVVFGPIAMMTS 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              R    FAITM ++ L+S+F + ++   +   ++R +  +   +  +   +       
Sbjct: 455 LVGRFLVPFAITMTIATLVSLFVSFTLTPILASIMLRKELPEPNPLLKVFNRWWDAGYGF 514

Query: 540 IQFMRARFWGVGI 552
           I     R   +  
Sbjct: 515 IAGWFNRSVHLVC 527



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 87/239 (36%), Gaps = 8/239 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + + +LQ   +  Q    ++  + ++   P   +    ++ +V   +  ++P        
Sbjct: 787  NAISTLQPSTMPIQINRTDRERVAKVYANPAPKIGLQDLVTIVTDTVNPLLPPGYKIRFG 846

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                 ++          ++ + +   + I    + W      + T+ L +          
Sbjct: 847  GQVTSMTEAFADFA-QAIVFAIVLTYLLIAAIMESWTRPFLIMFTVPLALIGMELALLWA 905

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  ++  +   + LIG  VN+ +++ D            +  R+ +  ++       + 
Sbjct: 906  GIPLSIFGLLGFVMLIGIVVNNAILIMD---DLAAQKAAGLPPREAMLAAVGNKFRPILM 962

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            TS+AA + ++PMA     G     S  I +  G+V +   ++++   + +       KN
Sbjct: 963  TSIAAVLGIVPMAFGAGIGSETRASCGIAVIGGLVSSTILALYVIPALYILFCRKPKKN 1021



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 79/244 (32%), Gaps = 13/244 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R   +     +        +    V L+          RV++ V+ ++  I     + +
Sbjct: 254 LRDVAKISMESEEKRSLAFYDGQPGVILKIVKKGDSNAVRVIDSVRAEVERINRDRELPS 313

Query: 654 -----TEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITTLILDITKT 707
                         +  +      ++I  I    I      +         ++ + I  +
Sbjct: 314 GMKLQWVRDSGSFIKASVDDAWSSIVIGVILTAAILFAFLHEVRSTFIVAVSMPVSIVVS 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G  FN+  + A+ T +G  V + +VV + +    K     +  +   D    E
Sbjct: 374 FWVMQMCGFTFNMFTLLALGTSVGTLVTNSIVVIENI---AKKLDQGMDPKTASDIGAGE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                  ++M   +   P+A+     G  +  FAI M    +V+   S F   PIL  I 
Sbjct: 431 VAVPVFASAMTNVVVFGPIAMMTSLVGRFLVPFAITMTIATLVSLFVS-FTLTPILASIM 489

Query: 825 DWRA 828
             + 
Sbjct: 490 LRKE 493


>gi|308061940|gb|ADO03828.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori Cuz20]
          Length = 1028

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 64/568 (11%), Positives = 155/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFNTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKRIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESYYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     +     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKIGMEFM 540



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   + 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQSLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 38.9 bits (88), Expect = 4.1,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 79/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K+I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKRI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|300871745|ref|YP_003786618.1| acriflavin resistance protein [Brachyspira pilosicoli 95/1000]
 gi|300689446|gb|ADK32117.1| acriflavin resistance protein [Brachyspira pilosicoli 95/1000]
          Length = 1024

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 203/665 (30%), Gaps = 47/665 (7%)

Query: 1   MRNNPWLVI---LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           M+     +I       +  + + I     + +  +D  P+                   V
Sbjct: 1   MKKFILFIINKPTTVSVTLVSIFIIGFVSISKLKVDYLPNMEIPII---------SVKTV 51

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
            E    + V   +    +   S +          ++ ++ + + F      +  AD +  
Sbjct: 52  YENSAPEEVEKNVTRIIESAISSVNNVKNIKSKSKESESNVEIEFNWGTDLQTAADDIRE 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  + S+L  D     +   +     I+         I +       I  + +  +   
Sbjct: 112 AIDMIRSELPDDVDNPNISKFSSDASPIMEIAFF---GIDNLSALYDLIDSRILTSLEQI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   Q      +   +  + + +RL         +     + N +  G        +   
Sbjct: 169 EGVAQTEIRGGLKKTIYVDINLNRLNAYFININDIVKTLSIENQNIVGGQTYEGVYKYGI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   ++  +I  + +      F  K         + +  A       +          
Sbjct: 229 RTKGEFKNINDIENVVVALKNNIFPVKIRDIANVYEYYDDEAEIVRINGQKA-------- 280

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     ++ AI           + +    L  M     +  K+             
Sbjct: 281 ----------VSVAITKESGANIIQISRDVNKRLETMDLPYGVYYKVLFNSSDT---INN 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T    A   +I+L + +   K  ++   SI ++VI T  L+  L  ++ + S+
Sbjct: 328 SIKNVISTIWQGALFAIIILMIYLWDIKSVIIISISIPISVITTFILMYFLDISINIISL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS---TIFDSNITALIAT 474
           +G+VLG+G+ +D++I+V E I   N+ + ++  ++    + A      I  S +T++   
Sbjct: 388 SGLVLGVGMMLDNSIVVLENIFIHNKDSNNIIDNIKASVNGASEVSIAITASTLTSVSVF 447

Query: 475 VVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-----IDIN 526
           +   F  G          +T+ +S+L S+F AI+IV  +   I       +        N
Sbjct: 448 LPFLFVKGQVEQMFSDLCLTVSISLLTSLFVAITIVPLLASRIKNNNFKFTKLESFFQNN 507

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             S+       +    M+ +     I        + L+       G        +     
Sbjct: 508 IHSKTEKFYLTLLSLVMKNKRKSFLIIFSVLFSLLILMLIKIPKEGYPVSDAGTIISRLR 567

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            PV   V  ++L   ++ D    +     ++         +       ++++ ++     
Sbjct: 568 MPVGTRVQFTDLFIDRMEDDIENSVGENIDYYETRVRTGRNEHHGEVRVKLIDREKGRDK 627

Query: 647 PLSTI 651
            ++  
Sbjct: 628 DINYY 632



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 85/216 (39%), Gaps = 6/216 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
             +  +          A   ++  +KK++  I   S          +  +E   + +V +I
Sbjct: 803  NDNRIIEITASSYGRAVNEIIADIKKELNNIYIPSGFLINFSGDYEDMQESFHQLLVSLI 862

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ + +   I  +F+ +        ++   +   L F  + G   N+ +   ++ L+G  
Sbjct: 863  MAIVFVYAIIAGQFESYITPFVISLSVPFALFGALIFLYIGGETLNVYSAIGIIMLVGIV 922

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +V+ D M  N  +   +IS+ +   ++    L   + TS+   + +LPM +    G
Sbjct: 923  VNNGIVLIDYM--NKVVLEENISWNESALRACKRRLKPVLMTSLTTILGMLPMMLKVGNG 980

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +    A  +  G++ +   ++ I   +     + 
Sbjct: 981  TEMYKPLATAVCGGLLFSTVFTLIIIPAVYSSFRNR 1016



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 85/260 (32%), Gaps = 3/260 (1%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +      + V     +    +R      +  D   +         V +           +
Sbjct: 236 NINDIENVVVALKNNIFPVKIRDIANVYEYYDDEAEIVRINGQKAVSVAITKESGANIIQ 295

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWY 691
           +   V K++  +     +    +     +     K ++  I   +  A++I +   +   
Sbjct: 296 ISRDVNKRLETMDLPYGVYYKVLFNSSDTINNSIKNVISTIWQGALFAIIILMIYLWDIK 355

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +    ++ + +  T        I  N+ +++ ++  +G  +++ +VV + +  + K  
Sbjct: 356 SVIIISISIPISVITTFILMYFLDISINIISLSGLVLGVGMMLDNSIVVLENIFIHNKDS 415

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
              I          +E       +++ +    LP     G V   F+  +   + ++  +
Sbjct: 416 NNIIDNIKASVNGASEVSIAITASTLTSVSVFLPFLFVKGQVEQMFS-DLCLTVSISLLT 474

Query: 812 SIFIAAPILLFIYDWRAKNA 831
           S+F+A  I+  +      N 
Sbjct: 475 SLFVAITIVPLLASRIKNNN 494


>gi|289661824|ref|ZP_06483405.1| acriflavin resistance protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1042

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 65/544 (11%), Positives = 146/544 (26%), Gaps = 38/544 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVASLPNIQIPIIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + L F  SR  ++ A  +   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSLVVLVFQSSRKIDSAAQDIQTAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      D     A E           ++       
Sbjct: 115 SQSDLPSGLGTPMYSKANPNDDPVIAIALTSD--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +     
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDNLRNAVRAANVTSPTGFLSDGNTTMAIIAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVSKAAD-------------------FAQLAIATQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR+   P                S   
Sbjct: 274 WFNGKRAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQVTLMISLAMVILTMALFLRRLAPTLIAAVAVPLSLAGSALVMYMLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD+ I+V E +     +  S   +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDNAIVVIENVMRHLDEGMSRMDAALAGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +     +       +    + D +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSAHAEQEKPSRFGAWLDRMHDRM 513

Query: 539 AIQF 542
              +
Sbjct: 514 LRAY 517



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/196 (16%), Positives = 80/196 (40%), Gaps = 10/196 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               +V   + +  + + P +T+       P I   L    +  ++IS   +++ + +  
Sbjct: 295 ETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHEVQVT-LMISLAMVILTMALFL 353

Query: 689 KWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +     L A   + L +  +     + G   N  ++ A++  IG+ V++ +VV + +   
Sbjct: 354 RRLAPTLIAAVAVPLSLAGSALVMYMLGFTLNNLSLLALVIAIGFVVDNAIVVIENV--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAF 803
           M+     +S  D       E +G ++ +  A+ ++V    ++   +I      F + +  
Sbjct: 411 MRHLDEGMSRMDAALAGARE-IGFTIVSITASLVAVFIPMLFASGMIGAFFREFTVTLVA 469

Query: 804 GIVVAASSSIFIAAPI 819
            IVV+   S+ +   +
Sbjct: 470 AIVVSMLVSLTLTPAL 485


>gi|87310286|ref|ZP_01092417.1| Acriflavin resistance protein [Blastopirellula marina DSM 3645]
 gi|87287035|gb|EAQ78938.1| Acriflavin resistance protein [Blastopirellula marina DSM 3645]
          Length = 1025

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 83/663 (12%), Positives = 188/663 (28%), Gaps = 49/663 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   + +  +   I L++     +P   LD FP   P              ++ ++ +  
Sbjct: 7   SALKLRVAVLALSIMLIVVGVRLIPHLPLDVFPEFSPP-------------YIEIQTEAP 53

Query: 64  DFVNGFLQMYSD-ELRSFL---KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 ++      L + L                 + I L              V   L
Sbjct: 54  GLSAEEVENLVTFPLENALVGAPGLETIRSKSVLGLSSIRLLLNYGADVYRTRQLVQERL 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                +L V  +  +++        ++      +++     E +   +     ++     
Sbjct: 114 ASETPRLPVVARAPVILQPLSSLSRMMKIGIWSEEL--DQREMTELAVWTIRPRLMAIPG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                   +   +     DP RLR    +   +            G        R +   
Sbjct: 172 VANVAIWGQRDKEFQVLVDPQRLRDHQLSLDMILKSAGDAVVLDAGGFVDTPNQRLAVRQ 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              VE   ++S   +   T                               +       + 
Sbjct: 232 LSPVETPEDLSQAVVTNRT--------------------GSVLRLGDVAKVQIGSPPAIG 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++        I   +   +             +++ G   ++++    R       S 
Sbjct: 272 DAIINDVPGLLLIVEKQPAANILEVTRKIEEALDLMKPGLRGVEIDSTIFRPATFIERSI 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   I   LV+I+L + +   +  +++  +I L+++ T+ +L   G T+    IAG
Sbjct: 332 DNLTQALLIGCVLVVIILVLFLYDWRTAVISLTAIPLSLMATIVVLYWWGLTINTMIIAG 391

Query: 420 IVLGIGLAVDSNILVNERIREENR------KNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           +V+ +G  VD  I+  E I    R      + +S F  +        S +  +    ++ 
Sbjct: 392 LVIALGEVVDDAIIDVENIVRRLRLNRAAAQPRSSFRVVLAASLEVRSAVVYATAIIILV 451

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + +FF     G   R  A+   L+I  S+  A+ +  A+ + I+ Y K ++ +      
Sbjct: 452 FLPIFFLEGLPGAFFRPLALGYVLAISASLLVALLVTPALSLMILPYGKKEAHEPPLSRW 511

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  I   F+R R  G    ++ S      L +      +         +       
Sbjct: 512 LRRPYHLILPWFIR-RPIGAIALLIVSFLGTAWLTSQLGQEFLPNFQETDFLMHFVERPG 570

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            S+   +  ++Q                   + +  D V      E+      +     T
Sbjct: 571 TSIEAMDRVTIQASKELRAIPGVRNFGSHIGRAEAADEVVGPNFTELWISIDEQADYEMT 630

Query: 651 IQN 653
            + 
Sbjct: 631 HEQ 633



 Score = 89.8 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 42/267 (15%), Positives = 91/267 (34%), Gaps = 9/267 (3%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      +       + L  V                 D     L+  +    + +  T
Sbjct: 238 PEDLSQAVVTNRTGSVLRLGDVAKVQIGSPPAIGDAIINDVPGLLLIVEKQPAANILEVT 297

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWY 691
           R +E     +   +    I +T           I      ++I   + ++I +   + W 
Sbjct: 298 RKIEEALDLMKPGLRGVEIDSTIFRPATFIERSIDNLTQALLIGCVLVVIILVLFLYDWR 357

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN 747
            A+ ++T + L +  T+     +G+  N   +A ++  +G  V+D ++    +  R+R N
Sbjct: 358 TAVISLTAIPLSLMATIVVLYWWGLTINTMIIAGLVIALGEVVDDAIIDVENIVRRLRLN 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                   SFR ++  S+ E     VY +    +  LP+       G+     A+     
Sbjct: 418 RAAAQPRSSFRVVLAASL-EVRSAVVYATAIIILVFLPIFFLEGLPGAFFRPLALGYVLA 476

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           I  +   ++ +   + L I  +  K A
Sbjct: 477 ISASLLVALLVTPALSLMILPYGKKEA 503



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/268 (15%), Positives = 96/268 (35%), Gaps = 13/268 (4%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                N            +  + P    V   +L  + I     +      +  + +    
Sbjct: 755  VVWGNEEARSDLTALHDLRIDTPTGGQVPLKDLADVSIVPAPNEVKREGGSRRIDVSCDA 814

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-IISAIAMLIYI 684
                  +   ++        VP     + E +G   +R+  +  ++ +  +S I M++ +
Sbjct: 815  EGRDLGSVARDVEAAVF--TVPFDRGYHPEFLGEYTARQQSQNQLLALSAVSLIGMILIL 872

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFA--LFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +I F+    L  I  L +      G  A  + G   +L ++   +T++G +  + +++  
Sbjct: 873  YIDFQSLR-LTLIVALTIPFALIGGVVAAWIAGGVLSLGSLIGFVTVLGIAARNGIMLVS 931

Query: 743  RMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---- 797
              R           F  +L+ +   E L   + T +   +++LP+A+ G           
Sbjct: 932  HYR--HLQLEEGEPFGLNLVVRGAEERLLPILMTVLTTSLALLPLAISGNKPGHEIEYPL 989

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYD 825
            A+ +  G+V +   ++FI  P+ L    
Sbjct: 990  AVVIVGGLVTSTILNLFILPPLYLLWGK 1017


>gi|94986215|ref|YP_605579.1| acriflavin resistance protein [Deinococcus geothermalis DSM 11300]
 gi|94556496|gb|ABF46410.1| acriflavin resistance protein [Deinococcus geothermalis DSM 11300]
          Length = 1138

 Score =  138 bits (346), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/515 (11%), Positives = 147/515 (28%), Gaps = 43/515 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  + + ++ M+  +GL+ A      +  ++  P+                        
Sbjct: 34  RNYVFSIGVFLMVVLLGLIAA-----TRLGVELLPNFEVPVL---------AVSTSYPGA 79

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V+  +    ++  S L        +    Q+ + ++FAD    ++ A+ V+  +  
Sbjct: 80  TPDQVDREVSRKIEDAVSTLGGVVDINTTSVSNQSAVVITFADKTNIDSAANSVSQAVAA 139

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L    +  ++         I+            A + +       + ++   +   
Sbjct: 140 IRATLPDGAEAPVVQKFDPNATPILTLALLGGSAR--AADVTAYAEDTLVPRLERVKGVA 197

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     Q+    DP RL+      A++                         GN  
Sbjct: 198 DVNVSGGPERQIQVLLDPVRLQAYNLAPARVIGAIQASALDLPAGSL------TQQGNTV 251

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +                                A          +    A      
Sbjct: 252 SFSTR----------------NTPTSLGDVEQIVVDPASGLRVADVATVRDTTARPTSYA 295

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +             +  +     +                    +      A   +   
Sbjct: 296 RVNGQPAVLLSVRKASGTNSVAVSDAVRQAME--TQPLPAGYQLTLASDTTSATRATVDD 353

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +    V +++ + +           +I +++     L S+LG +  + S+  I+
Sbjct: 354 TFREFLLAIAAVGVIVLLFLGRLNTVFAVILAIPISISAAPLLYSVLGFSFNIVSLLAII 413

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD +I+V E ++        +  S+ +G S  +S +  ++ + L   + L F  
Sbjct: 414 VAIGIVVDDSIVVAENVQRYRDMGYGLLRSVLLGGSEVFSAVTAASFSLLAVLIPLSFMP 473

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
              G     F + +  +I++S   ++  +   M +
Sbjct: 474 GILGQFFSQFGLGLAAAIVMSWLESLLFLTVRMAY 508



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 15/148 (10%), Positives = 54/148 (36%), Gaps = 7/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             + + +  +  + L I   +    LF ++ ++  V  ++ L+G S  + ++  + + + M
Sbjct: 985  SFRYPVYLLLPIPLAIVGAIWTLHLFRVDLDVITVLGMVILLGLSTKNSILYLEFVTERM 1044

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +      +  +  +          + T++   +  +P+      G        I +  G+
Sbjct: 1045 RTLPLRAALLEAAEL----RFRPILMTTLTVLVISIPLVFGHGNGAEFRRGLGIVILGGV 1100

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            + +   + ++   +       R +   +
Sbjct: 1101 ITSTLLTFYVVPSVFYQFERRRQRPPEL 1128



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 88/256 (34%), Gaps = 9/256 (3%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
               N         Q+ V     + ++ V +  ++        +        L   +   
Sbjct: 253 FSTRNTPTSLGDVEQIVVDPASGLRVADVATVRDTTARPTSYARVNGQPAVLLSVRKASG 312

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
            +SVA +  +    +             ++      +          + I+A+ +++ ++
Sbjct: 313 TNSVAVSDAVRQAMETQPLPAGYQLTLASDTTSATRATVDDTFREFLLAIAAVGVIVLLF 372

Query: 686 I-RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           + R    FA+  I  + + I+     +++ G  FN+ ++ A++  IG  V+D +VV + +
Sbjct: 373 LGRLNTVFAV--ILAIPISISAAPLLYSVLGFSFNIVSLLAIIVAIGIVVDDSIVVAENV 430

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +           +    +E        S +    ++P++      G     F + +
Sbjct: 431 ---QRYRDMGYGLLRSVLLGGSEVFSAVTAASFSLLAVLIPLSFMPGILGQFFSQFGLGL 487

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++   S+    
Sbjct: 488 AAAIVMSWLESLLFLT 503


>gi|254779399|ref|YP_003057504.1| Cytoplasmic pump proteins of the hefABC efflux system [Helicobacter
           pylori B38]
 gi|254001310|emb|CAX29295.1| Cytoplasmic pump proteins of the hefABC efflux system [Helicobacter
           pylori B38]
          Length = 1029

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 65/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 11  ITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVV---------VTTTYPGASAEIIESK 61

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 62  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 120

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 121 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 178

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 179 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 238

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 239 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 274

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 275 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTSYIRTSIEDVKFDLVLG 333

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 334 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 393

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     S   +   G      A   I    ++  +    +    G   +
Sbjct: 394 DAIVVIENIHKKLEMGMSKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 453

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 454 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKVLESRYTRLLQWVLN 513

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 514 HKLIISIAVVLVFVGSLFVASKLGMDFM 541



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   V 
Sbjct: 800  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKESNGEFLVA 859

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 860  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 919

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 920  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 976

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 977  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1020



 Score = 39.7 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 241 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 300

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 301 QAISPSYEIRPFLDTTSYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 360

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +S R    
Sbjct: 361 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMSKRKASY 417

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 418 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 476

Query: 820 L 820
           +
Sbjct: 477 V 477


>gi|118442948|ref|YP_877913.1| preprotein translocase subunit SecD [Clostridium novyi NT]
 gi|118133404|gb|ABK60448.1| protein-export membrane protein SecD [Clostridium novyi NT]
          Length = 421

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 91/254 (35%), Gaps = 8/254 (3%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           Y    K  I L + A+     +         +I            N    +         
Sbjct: 152 YDDMQKPTIGLELKADGAKKFAEATQKFLGKRITIYMDGEVLTSPNVQSVITGGKATITG 211

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----IVGVIISAIAMLIYIWI 686
            + + E   +          +    +    +   L        I    I    +LI++ +
Sbjct: 212 SSSLEEAKHQASVIKSGALPVSLEAVEFKTVGATLGANALPLSIKAGAIGIGLVLIFMLL 271

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++    L A   LI  +   LG F        L+ +A  L  +G +V+  V++++R+++
Sbjct: 272 YYR-GPGLMADIALIFYVLIVLGTFVAVKATLTLSGIAGFLLTVGMAVDANVLIFERIKE 330

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +KL     S +  +D   N  L   + +++   I+ + +   G   +  FA+ +  GIV
Sbjct: 331 ELKL---GKSLKVAVDAGFNRALSSILDSNITTIIAGVVLYYLGSGAVKGFALTLMIGIV 387

Query: 807 VAASSSIFIAAPIL 820
           ++  +++ +   ++
Sbjct: 388 LSIFTALTVTRMLI 401



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 223/385 (57%), Gaps = 27/385 (7%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +     V +  IE+++E++  R++  G+ E+++QR G +RI I++PGE D  ++ + 
Sbjct: 63  VLEEVKGKDVSNETIERTIELLSMRVNPEGVKETSVQREGKNRIRIEIPGEFDSKKVLES 122

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T K+ F                             + KV ++G  +      +    
Sbjct: 123 IGKTGKLEF--------------------------KGPDGKVILTGADVKD-ATAYYDDM 155

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            KP + +     GA++F E T+  +GK + + +DG VLT+P +   I  GKA I+G+ ++
Sbjct: 156 QKPTIGLELKADGAKKFAEATQKFLGKRITIYMDGEVLTSPNVQSVITGGKATITGSSSL 215

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A+++++G+LP+ L  VE + VGA LG++++     A   G+ L+++FM++ Y  
Sbjct: 216 EEAKHQASVIKSGALPVSLEAVEFKTVGATLGANALPLSIKAGAIGIGLVLIFMLLYYRG 275

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD ++   V++ L     + ATLTL  IAG +L +G+AVD+N+L+ ERI+EE +  
Sbjct: 276 PGLMADIALIFYVLIVLGTFVAVKATLTLSGIAGFLLTVGMAVDANVLIFERIKEELKLG 335

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  ++D GF+RA S+I DSNIT +IA VVL++ G GAV+GFA+T+ + I++S+FTA++
Sbjct: 336 KSLKVAVDAGFNRALSSILDSNITTIIAGVVLYYLGSGAVKGFALTLMIGIVLSIFTALT 395

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSR 530
           + R ++   +    +       + R
Sbjct: 396 VTRMLIKLGMNMGLLSKASHFGVKR 420



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 1/117 (0%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           + L+  +     ++A   F     +  +        I+ GLDL+GG  ++ EV   D  N
Sbjct: 15  IALFVAVVVAIGILAYGGFFGIKNICGYRVKPFSESINKGLDLQGGISVLEEVKGKDVSN 74

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVN 123
             ++   + L   +  EG+   S+++   N+I +        + + + +    +   
Sbjct: 75  ETIERTIELLSMRVNPEGVKETSVQREGKNRIRIEIPGEFDSKKVLESIGKTGKLEF 131


>gi|260567921|ref|ZP_05838390.1| AcrB/AcrD/AcrF family multidrug efflux protein [Brucella suis bv. 4
           str. 40]
 gi|261753770|ref|ZP_05997479.1| RND family transporter [Brucella suis bv. 3 str. 686]
 gi|260154586|gb|EEW89667.1| AcrB/AcrD/AcrF family multidrug efflux protein [Brucella suis bv. 4
           str. 40]
 gi|261743523|gb|EEY31449.1| RND family transporter [Brucella suis bv. 3 str. 686]
          Length = 611

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 157/605 (25%), Gaps = 39/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATMLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLIPDC 537
           G   R    F + + L+IL S   ++++   +   +   +     I              
Sbjct: 454 GIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQAKPGRIAQMFNRVTESYGRA 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +           +   + F       +      +  +  G + +   A + +    +   
Sbjct: 514 VGWCLRHRLLVMLLFVLSFLGSVWSFMTLPRSFFPQEDTGLVMISTQARQDISYQGMSEL 573

Query: 598 LESLQ 602
            +   
Sbjct: 574 QKQAA 578



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/246 (14%), Positives = 90/246 (36%), Gaps = 12/246 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATMLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     LP+ + G   G V+  F + +   I+ +A  S+ +   +   +   +
Sbjct: 434 TIISMSLSLVAVFLPILLMGGIVGRVLNEFGMVVTLAILSSAVVSLTVTPMLAARLPHKQ 493

Query: 828 AKNARI 833
           AK  RI
Sbjct: 494 AKPGRI 499


>gi|146307452|ref|YP_001187917.1| acriflavin resistance protein [Pseudomonas mendocina ymp]
 gi|145575653|gb|ABP85185.1| acriflavin resistance protein [Pseudomonas mendocina ymp]
          Length = 1034

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/492 (11%), Positives = 132/492 (26%), Gaps = 35/492 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P                     L       +   +    +     +     
Sbjct: 29  FGLLPVAPLPQMDFPTIT---------VQASLPGASPQIMAATVATPLERSLGTIAGISQ 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK-NLLVTTTEKEISI 145
                 Q   +I + F   +     A +V   +      L    +           +  I
Sbjct: 80  MNSRSSQGSTRIMIQFDLDKDINTAAREVQAAINAARELLPSGMRTMPSYRKINPSQAPI 139

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++     D +     +           ++       +       L  +    +P  L Q 
Sbjct: 140 MVISLTSDTLSKG--QLYDVASTILAQKLAQVGGVGEVQVGGSSLPAVRVSLEPRLLDQY 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                ++       N  +          R        +    +                 
Sbjct: 198 GIALDEVRQTIAASNALRPKGAVEDEQRRWQVQASDQLAKAAD----------------- 240

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
               + +                 +   +    +            + + ++  +   TI
Sbjct: 241 ---YLPMIIRYQDGAAVRLGDVATVTDGVEDRYNSGFFNDREAVLLVINRQSGANILQTI 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                    LR          V          +    + T  I  GLV++V+   +   +
Sbjct: 298 ADIRAELPALREVIPASVDLEVAMDRSPVIRATLHEAERTLLIAVGLVILVVLAFLGRWR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   ++ +++I + A + LLG +L   S+  +++  GL VD  I+V E I       
Sbjct: 358 AALIPALAVPVSLIGSFAAMYLLGFSLNNLSLMALIIATGLVVDDAIVVLENIARHIHNG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFT 502
           +    +   G      T+   N++ +   + + F GG      R F+IT+ ++++IS+  
Sbjct: 418 EKPMAAAFKGSREVGFTLLSMNLSLVAVFISILFMGGIVERLFREFSITLAVAVVISLVV 477

Query: 503 AISIVRAMMIFI 514
           ++++   +    
Sbjct: 478 SLTLTPMLCARW 489



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 30/275 (10%), Positives = 83/275 (30%), Gaps = 9/275 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                        +        + + +       + +      +  + D     F  ++ 
Sbjct: 220 VEDEQRRWQVQASDQLAKAADYLPMIIRYQDGAAVRLGDVATVTDGVEDRYNSGFFNDRE 279

Query: 617 FLVRLQYQPGDSVAQTRVLE---MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++ +  +   +     + +    +      I     ++      P I   L       +
Sbjct: 280 AVLLVINRQSGANILQTIADIRAELPALREVIPASVDLEVAMDRSPVIRATLHEAERTLL 339

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I   + +L+ +    +W  AL     + + +  +     L G   N  ++ A++   G  
Sbjct: 340 IAVGLVILVVLAFLGRWRAALIPALAVPVSLIGSFAAMYLLGFSLNNLSLMALIIATGLV 399

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+D +VV + +    +             K   E     +  +++     + +   GG V
Sbjct: 400 VDDAIVVLENI---ARHIHNGEKPMAAAFKGSREVGFTLLSMNLSLVAVFISILFMGGIV 456

Query: 794 ---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                 F+I +A  +V++   S+ +   +      
Sbjct: 457 ERLFREFSITLAVAVVISLVVSLTLTPMLCARWLK 491



 Score = 46.2 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 96/291 (32%), Gaps = 11/291 (3%)

Query: 546  RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
            R        L     +  +      +         +     R    +  R      +   
Sbjct: 737  RQVSTIYQALNQYSVVMEINPRYAQHPEALDQIQLITADGARVPLSTFARWERGLEEDRV 796

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                 F  E       +    D  ++     + +  +   V  +              + 
Sbjct: 797  NHQGQFAAENIGFALAEGVSLDQASRAIEDAVARLGLPTEVQGTLGGTGAAFQQTQGNQ- 855

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 + ++++ + + I + + ++ +   L  ++TL       L    L G+EF+L ++ 
Sbjct: 856  ----PLMILLALVVVYIVLGVLYESYVHPLTILSTLPSAGVGALLALQLVGMEFSLISLL 911

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +  LIG    + +++ D         +  +S ++ I ++        + T++AA +  L
Sbjct: 912  GLFLLIGIVKKNAILMVD--LALQLERSEHLSPQESIRRACLLRFRPILMTTLAAILGAL 969

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+ +    G  +     I +  G+V++   +++    I L+    R +  R
Sbjct: 970  PLVLGSAEGSEMRQPLGITIVGGLVLSQLLTLYTTPVIYLYFDRLRHRVNR 1020


>gi|32267146|ref|NP_861178.1| preprotein translocase subunit SecD [Helicobacter hepaticus ATCC
           51449]
 gi|32263199|gb|AAP78244.1| preprotein translocase subunits SecD [Helicobacter hepaticus ATCC
           51449]
          Length = 612

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 138/473 (29%), Positives = 230/473 (48%), Gaps = 24/473 (5%)

Query: 52  GGSHLVLEVDEDDFVNG-FLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKE 109
           G   +V   + ++ +    L+     +R+ L + G+   S+ Q   + I +     +  E
Sbjct: 130 GAYSIVFTAEYEEEIQSSALKQAIGTIRNRLDEFGLREPSVTQQGKDNILVQLPGIKTIE 189

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
               +    +                       + ++      +  +S   E   +    
Sbjct: 190 E-EQRARDLIA------------------KPAHLQMMAVDEERNARVSTMSELEAQKYND 230

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
            I     S        +   L +   E    P         T  +   ++          
Sbjct: 231 VILPFVHSSEVQALQNTLAHLQEKLNELKEHPQNSMSSQERTNTLFAERIKIEGEIAKIQ 290

Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
             +   +       L++    + G  L  A A FD    +P+V  S D  GA+ F + + 
Sbjct: 291 QELEAKKTKLNQVILLKAVPILDGSMLTDARAAFDQNN-QPIVSFSLDSKGAKIFGDFSG 349

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            N+GK +A+VLDG+V +APVI + I  G  QISG F++  A  LA  L++G+LP  + ++
Sbjct: 350 ANVGKRMAIVLDGKVYSAPVIRERIGGGSGQISGGFSVAEASDLAIALKSGALPAPMEVL 409

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
           E+R+VG  LG DSI     A+++G  L+V+FMI+ Y   G++A  ++F+N++L +A+++ 
Sbjct: 410 EKRSVGPSLGEDSIRASLIALISGFALVVIFMIIYYSLAGVIAVVALFVNIVLIIAVMAC 469

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            GA+LTLP +AGIVL +G+AVD+NI++NERIRE  R    +  S++MG++ A   IFDSN
Sbjct: 470 FGASLTLPGMAGIVLTVGMAVDANIIINERIREALRAGFGIAKSIEMGYANASRAIFDSN 529

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +T LIA V+L+ FG GA++GFAITMG+ I  S+ TAI     +   I++    
Sbjct: 530 LTTLIAAVLLYAFGTGAIKGFAITMGIGITASILTAIVGTHGIYQAIMQRIIK 582



 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 34/181 (18%), Positives = 75/181 (41%), Gaps = 4/181 (2%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             +     VGP +  + IR  ++ +I     ++I++ I +     + A+  L ++I   +
Sbjct: 406 MEVLEKRSVGPSLGEDSIRASLIALISGFALVVIFMIIYYSL-AGVIAVVALFVNIVLII 464

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              A FG    L  +A ++  +G +V+  +++ +R+R+ ++           I+      
Sbjct: 465 AVMACFGASLTLPGMAGIVLTVGMAVDANIIINERIREALRA---GFGIAKSIEMGYANA 521

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +++   I+ + +  +G   I  FAI M  GI  +  ++I     I   I     
Sbjct: 522 SRAIFDSNLTTLIAAVLLYAFGTGAIKGFAITMGIGITASILTAIVGTHGIYQAIMQRII 581

Query: 829 K 829
           K
Sbjct: 582 K 582



 Score = 44.7 bits (103), Expect = 0.070,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 93/221 (42%), Gaps = 26/221 (11%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           + +  +  +  +G+++ LP+F   +          +  ++L          +L +   + 
Sbjct: 18  YRLWSFIFVALVGIILCLPSFTDINGRKIALGLDLQGGLNL----------LLGIKTQEA 67

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +       + ++    KKE I + +++  ++KI+    D   ++ + DK+   + G+   
Sbjct: 68  IKARFSSLASQIVFDTKKENILIDNLKVFEDKISFELVD-TDEKPMLDKILSQINGLQ-- 124

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                     V       SIV +    +++ S A++Q++  IR R+D+ G+ E ++ + G
Sbjct: 125 ----------VNENNGAYSIVFTAEYEEEIQSSALKQAIGTIRNRLDEFGLREPSVTQQG 174

Query: 186 SHRILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLPNNSK 223
              IL+QLPG +      R R L+   A +    V    + 
Sbjct: 175 KDNILVQLPGIKTIEEEQRARDLIAKPAHLQMMAVDEERNA 215


>gi|82752134|ref|YP_417875.1| membrane transporter [Staphylococcus aureus RF122]
 gi|82657665|emb|CAI82114.1| probable membrane transport protein [Staphylococcus aureus RF122]
          Length = 829

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 78/592 (13%), Positives = 192/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ N +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYNVSQTSLKDDSRDNIKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +I        +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLVIFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A ST+  
Sbjct: 222 TYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYVKGIGLAVGTAGSTVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVV-----------RSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKGIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFAMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 87/263 (33%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          +    +
Sbjct: 79  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYNVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +      + +  L    N +             G    ++  I   + + + F    
Sbjct: 139 LKDDSRDNIKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLVIFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYVKGIGLAVGTAGSTVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKRIKVNK 338


>gi|294625328|ref|ZP_06703965.1| transport protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
 gi|292600397|gb|EFF44497.1| transport protein [Xanthomonas fuscans subsp. aurantifolii str.
           ICPB 11122]
          Length = 1028

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 84/646 (13%), Positives = 186/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATADGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V      D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AVRDDFPEDLQRFQVFKWSSSDEPVLKVRLASQTDLTGAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S                         N 
Sbjct: 172 AKVEISGAPPNEVEIAIAPDRLTAHDLSLNDLSERL-------------------GKLNF 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +   +++ +G  +            +    +      A+         +      +  G
Sbjct: 213 SVSAGQIDDNGQRIRVQPIGELRDLQELRELVL----NAKGVRLGDIAQVRLKPTRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +     + A      +RA      + +    N   A   S 
Sbjct: 269 RRLDGRPAIGLDVYKERSANLVEVSKAALKEVEDIRAQPAMRDVQVKVIDNQGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 AELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPDQPQRAALLGTRSVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     +              
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTPERGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G D      +            +
Sbjct: 509 AQVLAWTLAHRGWSVAGIILVSAISLVPMKLTKIDMFGGDGGNEAFIQYQWKGSYTREQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +                G +   T     VK 
Sbjct: 569 GEEIGRVENYLEANRAKYHITQIYSWFSEVEGSNTVVTFDASKVKD 614



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 86/237 (36%), Gaps = 11/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI-VPLSTIQNTE 655
            +L  +QI   + Q     +   + ++    + V        ++  +  +  P       +
Sbjct: 768  SLVEVQIRPAATQIGRTNRQTTLTIKANLAEKVTVPEARAAMEAPLKAMRFPAGYSYTFD 827

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E + + +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 828  GGDYQNDGEAMGQMVFNLVIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 887

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +     L    +     + +   E L   + 
Sbjct: 888  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN---NLRRRGMGRTQALVEGSRERLRPIMM 944

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T   A ++++P+          G      A  +A G+  +   S+     I   + D
Sbjct: 945  TMGTAILAMVPISLTSTTMFSDGPPYFPMARAIAGGLAFSTVVSLLFLPTIYAILDD 1001



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +    +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDIRAQPAMRDVQVKVIDNQGKAVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPDQPQ-----RAALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|78062576|ref|YP_372484.1| acriflavin resistance protein [Burkholderia sp. 383]
 gi|77970461|gb|ABB11840.1| Acriflavin resistance protein [Burkholderia sp. 383]
          Length = 1055

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/636 (11%), Positives = 171/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  MI       A P  L ++ +D  P+                  ++   
Sbjct: 8   LKRPYTFIVMAIMIVL-----ATPLALMRTPVDVLPAINIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           +   F    +      +        +        +       + +        +    + 
Sbjct: 50  NYSGFSATEMTNRITSVHERILTTTVNNIQHVESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +   +   +     Q+ 
Sbjct: 110 VSSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LADIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  L     T A +       N         +     
Sbjct: 168 TVPGVQIPFPYGGRTRVVAIDLDPQALLAKGLTPADIVNAVNAQNLVLPTGTAKMGQTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +IS                     +    +     +     ++    A
Sbjct: 228 RIDTNASADTIADIS--------------------SLPIQTVNGATTYLREVASVRDGFA 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLISILKSGDASTLKVVGDLKALLPKVIPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G        F S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTNLHDAILEGAGEIAVPAFVSTLCICIVFV 447

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + + R ++  +   +  SRF 
Sbjct: 448 PMFFLTGVARFLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPQQASTGPDHATSRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I       F R R W + +  +  +              +       LG       D  
Sbjct: 508 RIHHAFNDAFERLRAWYIVLLSILLVRRRFYAMCFLGFCVLSTGLVFVLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P D 
Sbjct: 568 NIRLHMRAPTGYRIEETARLADQVERVIRETVPPDE 603



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 56/490 (11%), Positives = 147/490 (30%), Gaps = 23/490 (4%)

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +     +         +   +VL     ++      L A     ++VI   +  S    T
Sbjct: 1   MWIVNLALKRPYTFIVMAIMIVLATPLALMRTPVDVLPAINIPVISVIWNYSGFSATEMT 60

Query: 412 LTLPSIAGIVLGIGL-----AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
             + S+   +L   +        +++     ++   +   +V  ++    S A + +   
Sbjct: 61  NRITSVHERILTTTVNNIQHVESTSLPGIAVVKVFLQPGANVQTAIAQTVSSAQAIVRQM 120

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
              A    V+ +      V    ++   ++       I++       I            
Sbjct: 121 PQGATPPLVITYSASSIPVIQLGLS-SKTLSEQSLADIALNFLRPQLITVPGVQIPFPYG 179

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISIL------------FSICSICLLFTHGLNYGID 574
             +R   I         +       ++ +                +   + T+     I 
Sbjct: 180 GRTRVVAIDLDPQALLAKGLTPADIVNAVNAQNLVLPTGTAKMGQTEYRIDTNASADTIA 239

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +  +      L  V S  +         +        +  L+     ++     
Sbjct: 240 DISSLPIQTVNGATTYLREVASVRDGFAPQTNVVRQNGQRGVLISILKSGDASTLKVVGD 299

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFA 693
           L+ +  K+   +P                  ++  I   +I + +  ++ +     W   
Sbjct: 300 LKALLPKVIPTLPEGLTITPLFDQSVFVNAAVQGVIHEALIAAVLTAMMILLFLGNWRST 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    ++ L I  +L   +  G   N+  +  +   +G  V+D  V  + + +++ L   
Sbjct: 360 LIIAISIPLSIFTSLIALSALGETINIMTLGGLALAVGILVDDATVTIENIERHLHL--- 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             +  D I +   E    +  +++   I  +PM    G     F +P+A  +V A  +S 
Sbjct: 417 GTNLHDAILEGAGEIAVPAFVSTLCICIVFVPMFFLTGVARFLF-VPLAEAVVFAMLASY 475

Query: 814 FIAAPILLFI 823
            ++  ++  +
Sbjct: 476 VLSRTLVPTL 485



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  I+ +   +   +    + G   ++ A+   +  +G
Sbjct: 890  VAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIVWMLFITGTHLSVPALTGAIMTVG 949

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R   +             ++    +   + T++A  I ++PMA+   
Sbjct: 950  VATANSILVVSFAR---QRLEAGAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1006

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1007 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1035


>gi|308184391|ref|YP_003928524.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori SJM180]
 gi|308060311|gb|ADO02207.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori SJM180]
          Length = 1026

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 63/568 (11%), Positives = 153/568 (26%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V       +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--VTTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPNY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++         +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMDKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESHYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     +     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKIGMEFM 540



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 80/241 (33%), Gaps = 9/241 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L++L     +       +    R         A   + E++ +                 
Sbjct: 780  LDALVEITETKSPSSISRYNRQRSVTVLAQPKAGISLGEILTQVSKNTKEWLVEGANYRF 839

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALF 714
              +        G   V ++   +LIY+    +          + T+ L  +       L 
Sbjct: 840  TGEADNAKETNGEFLVALATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLV 899

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                ++ ++  ++ LIG    +  ++ D   +  K     ++ ++ I  +    L   + 
Sbjct: 900  HQPLSMFSMIGLILLIGMVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILM 956

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++A    +LP+A+    G ++     I M+ G++++   S+ I       +     K  
Sbjct: 957  TTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIK 1016

Query: 832  R 832
            R
Sbjct: 1017 R 1017



 Score = 39.7 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPNYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     +  R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMDKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|257457344|ref|ZP_05622515.1| protein-export membrane protein SecD [Treponema vincentii ATCC
           35580]
 gi|257445266|gb|EEV20338.1| protein-export membrane protein SecD [Treponema vincentii ATCC
           35580]
          Length = 581

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 118/426 (27%), Positives = 210/426 (49%), Gaps = 34/426 (7%)

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
           ++   +       S +        A+  +++ I  RID+ G++E  I++ G  RI +++P
Sbjct: 155 IIIKADLSAVTGSSGDASTSAKKEAMNLAIDTISSRIDKFGLTEPVIRQQGEDRIYVEIP 214

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKK------------------------------ 224
           G  D  ++  ++     ++FH V  + ++                               
Sbjct: 215 GAADADKINSIIMGRGLLAFHIVDDDATQAFYSYYNSNPTRTFDADYNLIDPSIIPADTT 274

Query: 225 --GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
             G      +  D      +++ +  + G HL    +    +T++P+V    D+ GA  F
Sbjct: 275 VLGVYSKDAYGLDERQGFLVIKKEAALEGKHL-QQVSTTTSQTNEPLVVFELDKEGAEIF 333

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
             VT +N GK LA+V D ++ +AP I + I  G   ISG F+ + A  L  +LR   L +
Sbjct: 334 ATVTTENQGKRLAIVSDDKIKSAPNIREPITGGTGTISG-FSADEAENLKTILRTAWLNV 392

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
            L +  ++ +GA +G  +I +G  A+  GL+ ++ FM++ Y   G+ A  +  LN+ +  
Sbjct: 393 PLQLENQQVIGASMGEQAINQGLRALQWGLIAVLAFMLIWYRSAGINACIAQVLNLYIVF 452

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST 462
           ++LS    TLTLPSIAG++L IG+AVD+N+++ ERI+EE   ++S   ++  GF  A+  
Sbjct: 453 SVLSAFNLTLTLPSIAGMILTIGMAVDANVVIFERIKEELALHKSREAAIQTGFDHAFWA 512

Query: 463 IFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           I DSNIT  IA + L   G G ++GFA ++ + ++ S+FTA+ + R +  F       K 
Sbjct: 513 IMDSNITTFIAALFLSILGTGPIKGFAYSLTIGVVSSVFTALFVSRLIFDFGTETLHHKK 572

Query: 523 IDINPL 528
           + I   
Sbjct: 573 LYITWR 578



 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 101/249 (40%), Gaps = 5/249 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A     ++          + D   ++    +  +           A          +   
Sbjct: 330 AEIFATVTTENQGKRLAIVSDDKIKSAPNIREPITGGTGTISGFSADEAENLKTILRTAW 389

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           +     ++N +++G  +  + I +G+  +    IA+L ++ I ++    + A    +L++
Sbjct: 390 LNVPLQLENQQVIGASMGEQAINQGLRALQWGLIAVLAFMLIWYR-SAGINACIAQVLNL 448

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
                  + F +   L ++A ++  IG +V+  VV+++R+++ + L+ +       I   
Sbjct: 449 YIVFSVLSAFNLTLTLPSIAGMILTIGMAVDANVVIFERIKEELALHKSR---EAAIQTG 505

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +      + +++  FI+ L +++ G   I  FA  +  G+V +  +++F++  ++    
Sbjct: 506 FDHAFWAIMDSNITTFIAALFLSILGTGPIKGFAYSLTIGVVSSVFTALFVSR-LIFDFG 564

Query: 825 DWRAKNARI 833
                + ++
Sbjct: 565 TETLHHKKL 573


>gi|332711856|ref|ZP_08431786.1| cation/multidrug efflux pump [Lyngbya majuscula 3L]
 gi|332349184|gb|EGJ28794.1| cation/multidrug efflux pump [Lyngbya majuscula 3L]
          Length = 1080

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 77/514 (14%), Positives = 148/514 (28%), Gaps = 33/514 (6%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W    + + C + L   L  F  Q  L+  P                            
Sbjct: 9   RWRHGTFVLFCLLALCGILALF--QLPLELRPGGDTPEIT---------ISTSYAGAGPT 57

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V   +    +E    +        S R  +++I+L F      +     V   LQ V S
Sbjct: 58  EVEDLITRPIEEAVEEVTGVKEITSSSRPGRSRISLEFNWGTDIDARLVDVLSKLQRV-S 116

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE-QSMEIIRQRIDQIGISESTIQR 183
            L  +         +     ++       +      +     I    + ++   E   Q 
Sbjct: 117 SLPPEAGDPSAEVVSGVSSPMMWIVLMPKEGYDSDPDHYRDLIKDAIVPKLRQVEGVAQV 176

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
           L       ++    DP  L     T + +       N + +G    V             
Sbjct: 177 LTPGGREREVEVIVDPKALADRNLTLSNVVNTLRNNNRNIRGGPMVVGRREYRVRTVSRS 236

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           ED  E+ G                  V                 +   K  + VL     
Sbjct: 237 EDVKELEG-----------------FVLRRDQSGTVYLGDVADVEIGRKLESTVLVANDQ 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               I      G      +  +                    ++          S ++ +
Sbjct: 280 PTAGIGIERRIGANVPEISKGVRAVLKKLEAQLEQQGEGVQFLINYDENDYINQSIALVQ 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
               + A L  +VL + +   +   V   +I   +I    +L+LLG +L + S+AG+   
Sbjct: 340 QNLIMGAILASLVLLLFLGSLRTVAVIALTIPTTIITVFIVLALLGRSLNVISLAGLAFA 399

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---F 480
           +G+ VD+ I+V E I    ++ ++   +   G    +S +  S +T +     +      
Sbjct: 400 VGMVVDNAIVVLENIFTHMQRGKNPLRAAIDGTQEVWSAMLASTLTTVAVFAPIVLVTGE 459

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G       I +  S+L S+F A+++V  +    
Sbjct: 460 AGQLFFDIGIALSTSVLFSLFAALTLVPMLSGLF 493



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 97/262 (37%), Gaps = 12/262 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       V L+ V   +++     I   +        V ++          +  + + 
Sbjct: 805  VIYTPNGGQVQLADVAEVVDTTGPDRIDRVDLQRSITLTVSVERSAPLGKLVQQTEQQIL 864

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K   + +P             +S  L++ G + ++   I  L+ + +   + + +  + T
Sbjct: 865  KPFRKNLPAGYRVELAGSADLLSETLVQLGSIFILSLVITYLLLVALYHSFLYPIVIMAT 924

Query: 700  LILDITKTLGFFALFG------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + + +T  L    +        +  ++      + L G  VN+ +++ DR    ++L   
Sbjct: 925  VPIGLTGALLSLVIVNRIPGVLVPLDMITGLGFVILTGVVVNNAILLVDRA---LQLQRE 981

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             I +   + K++ + L     ++    + +LP+AV    G  +     I +  G+ ++  
Sbjct: 982  GIDYDTSLYKAVCDRLRPIFMSAGTTVLGMLPLAVIPGKGAELYQGLGITLTGGLALSTL 1041

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +  +   ++  + D+R +  +
Sbjct: 1042 LTPTVVPALMGLLGDFRGQKLK 1063



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 6/133 (4%)

Query: 695 GAITTLIL--DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            A+  L +   I       AL G   N+ ++A +   +G  V++ +VV + +        
Sbjct: 363 VAVIALTIPTTIITVFIVLALLGRSLNVISLAGLAFAVGMVVDNAIVVLENI---FTHMQ 419

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +          E     + +++       P+ +  G     F   +   +  +   S
Sbjct: 420 RGKNPLRAAIDGTQEVWSAMLASTLTTVAVFAPIVLVTGEAGQLF-FDIGIALSTSVLFS 478

Query: 813 IFIAAPILLFIYD 825
           +F A  ++  +  
Sbjct: 479 LFAALTLVPMLSG 491


>gi|254525250|ref|ZP_05137305.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
 gi|219722841|gb|EED41366.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
          Length = 1070

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 72/563 (12%), Positives = 156/563 (27%), Gaps = 41/563 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-DELRSF---LK 82
            PQ  +   P                   +V++          +       L      + 
Sbjct: 29  YPQLSVAPLPQIDFPT-------------IVVQASLPGASPQTMSTTVASPLERRLGVIA 75

Query: 83  KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                         ++TL F  SR  +  A  V   +    + L    + N         
Sbjct: 76  GVNEMTSQSGVGSAQVTLQFDLSRDIDGAARDVQAAINAARADLPTTLRSNPTYRKMNPA 135

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
            + +L    +        E    +      ++   +           L  +  E D S L
Sbjct: 136 DAPILI-LALTSATRTPSEIYDAVSATVQQRLLQVQGVGNVELGGAALPSVRVELDLSAL 194

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            Q       +       + ++                       V           +N  
Sbjct: 195 SQYGIALEDVRTALSSESANRP--------------------RGVIDGDGRAFQVYSNTP 234

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
                   D+                ++      V    +         I S +   +  
Sbjct: 235 GLHAADYRDVVVAWRNGAAVRLRDVGSVQDGPEDVRTMGLFNGQPSVSVIISRQPGANIV 294

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T++    L   L+A         V          S    + T  I   LV++V+ + + 
Sbjct: 295 DTVDAIQALLPALQANLPEDVHLAVASDRTLTIRASLREVETTLVIATLLVVLVVSLFLR 354

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             +  L+   ++  +++ T A++ LL  +L   S+  + +  G  VD  I+V E I    
Sbjct: 355 SWRATLIPAVAVVASLLGTFAMMYLLDFSLDNLSLMALTVATGFVVDDAIVVVENISRHI 414

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILIS 499
                   +  +G      T+   + + +   V L F G   G   R FA+T+ +++ IS
Sbjct: 415 EDGMQARAAALLGAGEVGFTVLSISTSLIAVFVPLIFMGGLIGRIFREFALTLSIAVAIS 474

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
           +  ++++   M   ++            +       D +  +++R+  W +    +  + 
Sbjct: 475 LLVSLTVTPMMASLLLVPPAQGEQQGRLMRSVQQGFDRMQQRYVRSLDWALAHRGVMLLS 534

Query: 560 SICLLFTHGLNYGIDFKGGIQLG 582
               +  +     +  KG     
Sbjct: 535 LALAIALNVYLMVVAPKGFFPAQ 557



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 52/140 (37%), Gaps = 8/140 (5%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     ++  +  T     L     +  ++ A+    G+ V+D +VV + +   
Sbjct: 354 RSWRATLIPAVAVVASLLGTFAMMYLLDFSLDNLSLMALTVATGFVVDDAIVVVENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAF 803
            +     +  R        E  G +V +   + I+V    ++ G +I      FA+ ++ 
Sbjct: 411 SRHIEDGMQARAAALLGAGEV-GFTVLSISTSLIAVFVPLIFMGGLIGRIFREFALTLSI 469

Query: 804 GIVVAASSSIFIAAPILLFI 823
            + ++   S+ +   +   +
Sbjct: 470 AVAISLLVSLTVTPMMASLL 489



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 93/234 (39%), Gaps = 6/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S            +    +      + +     +A  +  +++++ +  +   ++++   
Sbjct: 818  SAFSRWSSQSAPARLNHSDGEPSATVSFNLPPGIALGQAAQLIEQALDSLHLPASVRGEF 877

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALF 714
                ++  + +    + ++ + +A+ + + I ++     L  ++TL       L    + 
Sbjct: 878  GGTARVFNQSLATLPLLIVGALLAIYVVLGILYESAIHPLTVMSTLPAAGVGALLALIVT 937

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G + +L A+ A++ LIG    + +++ D   +     +  +S    I ++    L   + 
Sbjct: 938  GSQLDLIALIAIILLIGIVKKNAIMIVDFALE--AQRSRGLSALQAIREASILRLRPILM 995

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            TS+AA +  LP+A+    G  +     I +  G++V+   ++     + L +  
Sbjct: 996  TSLAAGLGALPLAIGFGDGAELRRPLGIAIMGGLLVSQFITLLTTPVVFLALDR 1049


>gi|92119061|ref|YP_578790.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
 gi|91801955|gb|ABE64330.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
          Length = 1096

 Score =  138 bits (346), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 69/541 (12%), Positives = 155/541 (28%), Gaps = 38/541 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G++      +       FP+ +                  L   
Sbjct: 9   RRPVATTLLTFGLAAVGVVAFFQLPVSPLPEVEFPTIL--------------VQATLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +     +        S      +ITL F  SR     A  V   +  
Sbjct: 55  SPQDVATTVASPLERHLGQIADVTEMTSSSTAGSTRITLQFGLSRDINGAARDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    + N          + ++    +        +           ++   E   
Sbjct: 115 ARADLPTSLRANPTYRKVNPADAPIMV-LTLTSDTLSRGQLYDAASTVLSQKLSQVEGIG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +     L  +  E  P  L +       +       N                     
Sbjct: 174 EVVVGGSSLPAVRVELVPQALYKYGIGLEDVRAALASANAHSP----------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G       AN      +    +                 +   +  + +  
Sbjct: 217 ---KGGIDVGAQRYQIYANDQANAAEQYKPLIIAYRNGAAVRLSDVGEVSDSVENLRNAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         +   +   +    ++    L   LRA   P     +          S   
Sbjct: 274 LANGKPAVLLVLYRQPGRNIIGIVDRVTALMPQLRASVSPAIDLDIAVDRSTTIRSSLRD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F  +  G+  L+   ++ ++++ T A++ L+G +L   S+  + 
Sbjct: 334 VEITLLIAIFLVVVVVFAFLRNGRATLIPVVAVSVSLVATFAVMYLMGYSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I        S   +  +G      T+   +++ +   + +   G
Sbjct: 394 VATGFVVDDAIVVLENITRHLEAGMSRLDAALLGAREVGFTVLSMSVSLIAVFIPILLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ ++I+IS+  +++    M   ++R +  +S      +   +    +
Sbjct: 454 GIVGRLFREFAMTISIAIMISLAISLATTPMMCAILLRRQSDRSHGRLYQASEHVFTAML 513

Query: 539 A 539
            
Sbjct: 514 N 514



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 51/128 (39%), Gaps = 6/128 (4%)

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T     L G   +  ++ A+    G+ V+D +VV + +    +     +S  D       
Sbjct: 373 TFAVMYLMGYSLDNLSLMALTVATGFVVDDAIVVLENI---TRHLEAGMSRLDAALLGAR 429

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     +  S++     +P+ + GG V      FA+ ++  I+++ + S+     +   +
Sbjct: 430 EVGFTVLSMSVSLIAVFIPILLMGGIVGRLFREFAMTISIAIMISLAISLATTPMMCAIL 489

Query: 824 YDWRAKNA 831
              ++  +
Sbjct: 490 LRRQSDRS 497



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 91/213 (42%), Gaps = 8/213 (3%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
             + +    +V+ +  +  ++  +  I   +T+  +     K+ +E +      ++ + I 
Sbjct: 863  TISFNLPPNVSLSTAVATIETTMNRIGVPATVHGSFQGTAKVFQESLSTQPYLILAALIT 922

Query: 680  MLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I + + ++ Y     I + +    +   L   A F  EF++ ++  V+ LIG    + 
Sbjct: 923  IYIVLGVLYESYVHPLTILSTLPSAGVGALLALMA-FNTEFSIMSLIGVILLIGIVKKNA 981

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ D            +S RD I ++        + T+MAA +  LP+A+    G  + 
Sbjct: 982  IMMIDFALD--AERARGLSSRDAIYEACLLRFRPIMMTTMAAMLGALPLAIGMGEGSELR 1039

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                I +  G++++   +++    I L+I  +R
Sbjct: 1040 RPLGIAIVGGLILSQILTLYTTPVIYLYIDQFR 1072


>gi|116052244|ref|YP_788912.1| RND efflux transporter [Pseudomonas aeruginosa UCBPP-PA14]
 gi|296387242|ref|ZP_06876741.1| RND efflux transporter [Pseudomonas aeruginosa PAb1]
 gi|313109655|ref|ZP_07795599.1| putative Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa 39016]
 gi|115587465|gb|ABJ13480.1| probable RND efflux transporter [Pseudomonas aeruginosa UCBPP-PA14]
 gi|310882101|gb|EFQ40695.1| putative Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa 39016]
          Length = 1029

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/643 (9%), Positives = 186/643 (28%), Gaps = 32/643 (4%)

Query: 54  SHLVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE 109
           S + +  +        +         +  S ++       +  Q ++ +T+    +R   
Sbjct: 43  STITVTTEYPGASADLMQGFVTQPIAQAVSSVEGIDYLSSTSVQGRSVVTIRMLLNRDST 102

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
               +    +  V  KL      +++  ++ +  ++     +   +   A   +  + R 
Sbjct: 103 QAMTETMAKVNSVRYKLPERAYDSVIERSSGETTAVAYVGFSSKTLPIPA--LTDYLSRV 160

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
                   +   +        + +    D  RL     T + ++      N      M  
Sbjct: 161 VEPMFSSIDGVAKVQTFGGQRLAMRLWLDADRLAGRGLTASDVAEAIRRNNYQAAPGMVK 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
            +++  +           +++ +                   +     G           
Sbjct: 221 GQYVLSNVRVN------TDLTNVDDFRE--------------MVIRNDGNGLVRLRDVGT 260

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +    A      ++                +    ++    L   ++    P     +  
Sbjct: 261 VELGAAATETSALMDGDPAVHLGLFPTPTGNPLVIVDGIRKLLPEIQKTLPPDVRVDLAY 320

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   S      T      +V++V+++ +   +  L+   +I L+++   AL+   G
Sbjct: 321 ETSRFIQASIDEVVRTLVEALLIVVLVIYLCLGSLRSVLIPVATIPLSMLGAAALMLAFG 380

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            ++ L ++  +VL IGL VD  I+V E +     + +S   +  +G       +    IT
Sbjct: 381 FSVNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPVAAALIGAREVAGPVIAMTIT 440

Query: 470 ALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--D 524
                  +   G   G   R FA+T+  ++++S   A+++   M   +++  + +     
Sbjct: 441 LAAVYTPIGLMGGLTGALFREFALTLAGAVIVSGVVALTLSPVMSSLLLQAHQNEGRMGR 500

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                   L      +         +   +   +C    L        +         + 
Sbjct: 501 AAEWFFGGLTRRYGQVLEFSLGHRWLTGGLALLVCISLPLLYSMPKRELAPTEDQAAVLT 560

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A +    + +       +  D  + +     +  +        +      L   +K+  +
Sbjct: 561 AIKAPQHANLDYVELFARKLDQVYTSIPETVSTWIINGTDGPAASFGGINLAAWEKRERD 620

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              + +    ++ G      +    +  +  S   + + + +R
Sbjct: 621 ASAIQSELQGKV-GDVEGSSIFAFQLAALPGSTGGLPVQMVLR 662



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/409 (13%), Positives = 127/409 (31%), Gaps = 17/409 (4%)

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQS-VFCSLDMGFSRAYS-TIFDSNITALIATVVL 477
           + + + L  DS   + E + + N         + D    R+   T   + +     T+ +
Sbjct: 91  VTIRMLLNRDSTQAMTETMAKVNSVRYKLPERAYDSVIERSSGETTAVAYVGFSSKTLPI 150

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
                   R           ++        R  M   +   ++    +        I   
Sbjct: 151 PALTDYLSRVVEPMFSSIDGVAKVQTFGGQRLAMRLWLDADRLAGRGLTASDVAEAIRRN 210

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                         +S +     +  +        I   G   + +     V+L    + 
Sbjct: 211 NYQAAPGMVKGQYVLSNVRVNTDLTNVD-DFREMVIRNDGNGLVRLRDVGTVELGAAATE 269

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
             +L  GD +             L    G       + + +   +   +   T +  +  
Sbjct: 270 TSALMDGDPAVHLGLFPTPTGNPLVIVDGIRKLLPEIQKTLPPDVRVDLAYETSRFIQAS 329

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
             ++ R L+   ++ V++      IY+ +       L  + T+ L +         FG  
Sbjct: 330 IDEVVRTLVEALLIVVLV------IYLCL-GSLRSVLIPVATIPLSMLGAAALMLAFGFS 382

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            NL  + A++  IG  V+D +VV + +    +      S          E  G  +  ++
Sbjct: 383 VNLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGKSPVAAALIGAREVAGPVIAMTI 439

Query: 778 AAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  P+ + G   G++   FA+ +A  ++V+   ++   +P++  +
Sbjct: 440 TLAAVYTPIGLMGGLTGALFREFALTLAGAVIVSGVVAL-TLSPVMSSL 487



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 84/254 (33%), Gaps = 10/254 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V       + +       LQ+       FD +    ++    PG S+ Q         + 
Sbjct: 765  VRTQDGNLVPLSTVVRVELQVEPNKLIQFDQQNAATLQAIPAPGVSMGQAVAFLDDVARG 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L    +   + + + + + +  +++     L  + T+ 
Sbjct: 825  LPAGFSHDWQSDSRQYTQEGNTL----VFAFLAALVVIYLVLAAQYESLADPLIILITVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     N+     ++TLIG      +++ +   +        +  R  I
Sbjct: 881  LSICGALLPLALGYATMNIYTQIGLVTLIGLISKHGILMVEFANE--LQLHERLDRRAAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
             ++    L   + T+ A    ++P+    G      F + +    G++V    ++F+   
Sbjct: 939  LRAAQIRLRPVLMTTAAMVFGLVPLLFASGAGAASRFGLGVVIVSGMLVGTLFTLFVLPT 998

Query: 819  ILLFIYDWRAKNAR 832
            +   +    A+  +
Sbjct: 999  VYTLLARNHAEVDK 1012


>gi|297379808|gb|ADI34695.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori v225d]
          Length = 1028

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 64/568 (11%), Positives = 155/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFNTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAILVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESYYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     +     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKIGMEFM 540



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   + 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 39.3 bits (89), Expect = 2.8,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPSYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAILVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|289625135|ref|ZP_06458089.1| multidrug RND efflux transporter, permease protein MdtC
           [Pseudomonas syringae pv. aesculi str. NCPPB3681]
 gi|330868007|gb|EGH02716.1| multidrug RND efflux transporter, permease MdtC [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 1035

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/564 (11%), Positives = 159/564 (28%), Gaps = 39/564 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FRLLPVAPLPNMDFPVIV---------VSASLAGASPEVMASTVATPLERSLGSIAGVNT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  Q   +I L F  +R     A +V   +    + L    +            + +
Sbjct: 80  MTSNSSQGTTRIILQFDLNRDINGAAREVQAAINASRNLLPSGMRSMPTYKKVNPSQAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   ++   +    +            +       +       L  +  E +P  L Q  
Sbjct: 140 MV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGEVQIGGSSLPAVRIELEPQMLSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N  +   +               +E   +                  
Sbjct: 199 VSLDDVRTAITGANVRRPKGLVEDDLHNWQVQANDQLETAKD------------------ 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                 +   +    +            + + +A  +   T+ 
Sbjct: 241 --YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIETVA 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA         V          +    + T  I   LV++V+F+ +   + 
Sbjct: 299 QIKAQLPALRAVLPASVSLNVAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ ++++ T A++ LLG +L   S+  ++L  GL VD  I+V E I        
Sbjct: 359 SLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENISRHIHNGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTA 503
               +  +G      T+   N++ +   + + F GG      R F+IT+ +SI++S+  +
Sbjct: 419 DPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSIVVSLIVS 478

Query: 504 ISIVRAMMIFIIRY------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +++   +    ++          +        R     D      MR R   +   ++  
Sbjct: 479 LTLTPMLCARWLKPHDSGKDNAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLLSLLITV 538

Query: 558 ICSICLLFTHGLNYGIDFKGGIQL 581
           + ++ L       +      G  +
Sbjct: 539 VVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     L G   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 98/262 (37%), Gaps = 9/262 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  QDPVTLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   S I +             +     ++ + +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLERDQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++ ++ I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    + L++   R +  +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHRYNK 1021


>gi|159903258|ref|YP_001550602.1| preprotein translocase subunit SecF [Prochlorococcus marinus str.
           MIT 9211]
 gi|159888434|gb|ABX08648.1| preprotein translocase subunit [Prochlorococcus marinus str. MIT
           9211]
          Length = 322

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 71/315 (22%), Positives = 136/315 (43%), Gaps = 17/315 (5%)

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
            ++     F +       ++ +    +        C +  L  + L  G+DF GG Q+ +
Sbjct: 5   PVHKTKLIFPVTRHRYKIWLVSGLAVIISIAGLISCWLNPLIGYPLRPGLDFTGGTQIKL 64

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS------------VAQ 631
                 + + +R++  +  + +I       E +  + +                    A 
Sbjct: 65  ERQCNDECNPIRTSNVTELLREIPLNTSGNESSPNLSIARVQFLDGYKSILVRLPFLTAS 124

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                               Q+ + +GP +  +L++  ++ ++++   + +YI  RF   
Sbjct: 125 QAEKVAQALDPIAGPFQPGGQSIDTIGPTLGAQLLKSSLISLLVAFSGIAVYISYRFDKT 184

Query: 692 FALGAITTLILDITKTLGFFALFGI----EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           FAL A+  L  D+    G FA  GI    E N     A+LT+ GYSVND VVV+DR+R+ 
Sbjct: 185 FALLALVALSHDVLIVCGVFAWLGIFLNLEVNSLFAVALLTISGYSVNDTVVVFDRIRE- 243

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +     S+ F   ID +++ TL R++YTS+   + +  +  +GG  +  F++ +A G+ V
Sbjct: 244 INSSANSLGFNQKIDFAVSATLSRTLYTSLTTLLPLGALIFFGGDTLFWFSVALALGVTV 303

Query: 808 AASSSIFIAAPILLF 822
            + SSI +A  +L  
Sbjct: 304 GSWSSIALAPSLLSL 318


>gi|126642939|ref|YP_001085923.1| IISP family preprotein translocase membrane subunit [Acinetobacter
           baumannii ATCC 17978]
 gi|126388823|gb|ABO13321.1| preprotein translocase IISP family, membrane subunit [Acinetobacter
           baumannii ATCC 17978]
          Length = 149

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 81/135 (60%), Gaps = 1/135 (0%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +GA+ +L  DI   +G FALF   F+LT +AAVL +IG+S+ND +VV DR+R+N +    
Sbjct: 1   MGAVMSLFHDIIIIIGAFALFQWPFDLTVLAAVLAVIGFSLNDNIVVSDRIRENFRKI-R 59

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             + R+++D ++ ETL R+++TSM   + VL M   GG  +  F++ M  G+ V   SSI
Sbjct: 60  GATPREIVDIALTETLRRTIHTSMTLLLVVLAMMFLGGDGLHWFSVAMFVGVFVGTYSSI 119

Query: 814 FIAAPILLFIYDWRA 828
           +I     L+    R 
Sbjct: 120 YIGTAFALWRGLNRQ 134


>gi|330970194|gb|EGH70260.1| acriflavin resistance protein [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 1009

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/511 (10%), Positives = 147/511 (28%), Gaps = 35/511 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +  +  FP       +             LE    + +   +    ++  + L+      
Sbjct: 31  RLGIQDFPDTDLPAVV---------ISASLEGAAPEQLETEVARKLEDKLTSLRLLKHVT 81

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             + +    I + F   +      ++V   +    ++L  +     +   T    +++  
Sbjct: 82  TQITEGSVLINVIFDIDKDGNEALNEVRNAVDSAAAELPANLDTPSVTRLTTNTTALLTY 141

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
             +  ++   A   S  +  +   Q+       +      +  ++  + DP+ +  L  +
Sbjct: 142 VVDAPRMDEEA--LSWFVDNELSKQLLTVRGVAKISRVGGVDREVQVDLDPALMAGLGLS 199

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
              ++           G    +   + +      ++D   +  I +              
Sbjct: 200 VTDIADRLRAMQKDNSGGQGDLGSGQQALRVLGGIDDPAALGAIRIPV------------ 247

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                      R         +    A            +           S        
Sbjct: 248 --------SDGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSDVGVTRDL 299

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                        +++       V   + +             L ++V++  +   +  +
Sbjct: 300 RQAVNEFAIQHPDVRIEEAS-NAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATI 358

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   ++ L++I T  ++   G +L   S+  + L IG+ VD  I+  E I    R  ++ 
Sbjct: 359 IVATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENIARHLRMGKTP 418

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAIS 505
             +           +  + +T +   +   F GG +    R F +T   +++ S+  A  
Sbjct: 419 RQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVARL 478

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +   M  ++++ +     D   + R+     
Sbjct: 479 LTPMMAAYLLKPRPHGEHDSGLMRRYLGWIH 509



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 83/254 (32%), Gaps = 6/254 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I++ V   R + +  + +  ++    +               ++      V  TR L 
Sbjct: 241 GAIRIPVSDGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSDVGVTRDLR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +     P   I+        +         +      +A+L+  W    W   +  
Sbjct: 301 QAVNEFAIQHPDVRIEEASNAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATIIV 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L I  T G     G   N  ++ A+  +IG  V+D +V  + +    +      +
Sbjct: 361 ATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENI---ARHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            R    ++ +E     + T++      LP A  GG        F +  +  ++ +   + 
Sbjct: 418 PRQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVAR 477

Query: 814 FIAAPILLFIYDWR 827
            +   +  ++   R
Sbjct: 478 LLTPMMAAYLLKPR 491



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +      V+E  K+        + ++  E    ++  EL     + + 
Sbjct: 785  DRLRNITLSIELNGSNLGEVMEQAKQLPVMQNLPAQVKLVEQGELQLMSELFGNFSLAMA 844

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +    +   + + F  +   L  ++ L L +   L    + G+ F++ +V  +L L+G  
Sbjct: 845  VGVFCIYAVLVLLFHDFMQPLTILSALPLSLGGALLALLIGGMSFSMASVIGLLMLMGIV 904

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGS 792
              + +++ +     M     ++S  D +  + ++     + T++A    +LP A+ WGG 
Sbjct: 905  TKNSILLVE--YAIMARRAPTVSRYDALIDACHKRARPILMTTIAMGAGMLPTALGWGGE 962

Query: 793  V--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                   A+ +  G++ +   S+ +   I  ++ D   +  R+
Sbjct: 963  SGFRQPMAVVVIGGLLASTVLSLLVVPVIFTYVDDGHERLKRL 1005


>gi|330869594|gb|EGH04303.1| preprotein translocase subunit SecF [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 150

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 88/131 (67%), Gaps = 1/131 (0%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           A+GAI +LI D+  T+G  + F I F+LT +AAVL +IGYS+ND +VV+DR+R+N +L  
Sbjct: 1   AVGAIVSLIHDVVVTMGILSFFQITFDLTVLAAVLAIIGYSLNDTIVVFDRVRENFRLLR 60

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              S  + I+ S  +TL R++ TS++  ++++ + V+GG  +  F+I +  G++    SS
Sbjct: 61  K-ASLIENINISTTQTLLRTIATSVSTLLAIVALWVFGGDSLEGFSIALFIGVLAGTYSS 119

Query: 813 IFIAAPILLFI 823
           I+IA  +L+++
Sbjct: 120 IYIANVVLIWL 130


>gi|323483123|ref|ZP_08088515.1| cation/multidrug efflux pump [Clostridium symbiosum WAL-14163]
 gi|323403543|gb|EGA95849.1| cation/multidrug efflux pump [Clostridium symbiosum WAL-14163]
          Length = 1015

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 68/619 (10%), Positives = 173/619 (27%), Gaps = 45/619 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V+    +   G+     + L  +     P  +                 V   
Sbjct: 8   LKRPVTTVLAVLCLIVFGISSIFSSKLELTPEMEMPMVV--------------VFTVYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V+  +    ++    L           +  + + L +      +     +     
Sbjct: 54  ANPEDVDELVTKPIEDEIGTLNGIKSVNSYSNENMSMVLLQYEYGTDMDKAYSDLKKKTD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S L  D +   ++     + + +            A      +  + + ++    S 
Sbjct: 114 AMQSSLPDDVQTPTIMEFNINDQATMYLAV----NNEKADNLYNYVDEKIVPELEKISSV 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  E  P +L+Q   +   +       N +       V          
Sbjct: 170 ASVDISGGREEYIRVEVIPEKLKQYHLSMNSLVTAVASANLAYPAGSTEV---------- 219

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G      T   +    + +  I          +     N+   L      
Sbjct: 220 ----------GSQSLSVTTGVEFDDMESLKRIPITVGNGNTIYLEDVANVYSTLKDAAGI 269

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          + + S     +      + L   +  +++ +    N     GS  
Sbjct: 270 GRYNGQDTVALGIKKQQKSSAMDVSKAVNRTISRLTEVNPDLQIVV-VNDNSDQINGSLI 328

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      + ++V+F+     K  L+   SI ++++  L ++ ++G +L + ++  +
Sbjct: 329 SVLQTMIAAIIVSMVVIFLFFGDLKASLIVGTSIPVSILAALVMMRVMGFSLNVITLGSL 388

Query: 421 VLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           VLG+G+ VD++I+V E      +         +   G S    +I  S  T  +  + L 
Sbjct: 389 VLGVGMMVDNSIVVLESCFRSTKGKGFNEFHKAALEGSSIVIQSIIGSTATTCVVFLPLA 448

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-KKMKSIDINPLSRFFLI 534
           F     G   +    T+   ++ S+ +A++IV    +      +    +           
Sbjct: 449 FLSGMTGQMFKPLGFTIVFCMVASLISAMTIVPLCYMMYRPKERTTAPLSGLVTKMQNGY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +     + +        L  I               + +G I + V     + +   
Sbjct: 509 RSIMNSLLPKKKTVMFTTVALLVISLFLATQLKMELMPANDQGTISITVGLRPGLGIEKA 568

Query: 595 RSNLESLQIGDISFQNFDG 613
              L  ++    + ++ + 
Sbjct: 569 NEILSEVEDYVANDEDVES 587



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 100/286 (34%), Gaps = 5/286 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
                            + T      ++    I + V     + L  V +   +L+    
Sbjct: 209 NLAYPAGSTEVGSQSLSVTTGVEFDDMESLKRIPITVGNGNTIYLEDVANVYSTLKDAAG 268

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +    +   L   + Q   ++  ++ +     ++TE+ P   I        +I+  LI
Sbjct: 269 IGRYNGQDTVALGIKKQQKSSAMDVSKAVNRTISRLTEVNPDLQIVVVNDNSDQINGSLI 328

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                 +    ++M++          +L   T++ + I   L    + G   N+  + ++
Sbjct: 329 SVLQTMIAAIIVSMVVIFLFFGDLKASLIVGTSIPVSILAALVMMRVMGFSLNVITLGSL 388

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  +G  V++ +VV +   ++ K    +  F     +  +  +   + ++    +  LP+
Sbjct: 389 VLGVGMMVDNSIVVLESCFRSTKGKGFNE-FHKAALEGSSIVIQSIIGSTATTCVVFLPL 447

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           A      G +       + F +V +  S++ I  P+   +Y  + +
Sbjct: 448 AFLSGMTGQMFKPLGFTIVFCMVASLISAMTIV-PLCYMMYRPKER 492



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 83/225 (36%), Gaps = 11/225 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           ++ +     SV  +++  +   D        +K + V +       + +     +     
Sbjct: 761 IVLDTATGGSVALTDIADIYFKDSPQNIVRADKEYQVTITGDFVKGIEKNDQDAIETTIY 820

Query: 643 TEIVPLSTIQNTEIVGPKISRELIR---KGIVGVIISAIAMLIYIWIRFKW-YFALGAIT 698
            E V  +  ++       +   +          + ++   + + +  +F+   F++  +T
Sbjct: 821 KEAVLPNMSESITRAQNSMDEAMAEEFGALAGAIGLAVFLIFVVMAAQFESPKFSIMVMT 880

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+   +  + G   L     ++ ++   L L+G  VN+ ++  D        Y + +   
Sbjct: 881 TIPFSLIGSFGLMFLADATISMPSLLGFLMLVGTVVNNGILYVD----TANQYRSDMERD 936

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             + ++    L   + T++   ++++PMA+     G ++   A+ 
Sbjct: 937 TALIEAGATRLRPILMTTLTTIVAMIPMALGIGDSGEMMQGMALV 981


>gi|319779588|ref|YP_004130501.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Taylorella equigenitalis MCE9]
 gi|317109612|gb|ADU92358.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Taylorella equigenitalis MCE9]
          Length = 1019

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 50/549 (9%), Positives = 145/549 (26%), Gaps = 43/549 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G+         +  +   P+                  + +    
Sbjct: 10  KPIATTLLAVAMLVAGIFT-----YFKLPVAPLPNMAIPA-------------IFVTASV 51

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +              +        S    +  +   F  S+   + A +V   
Sbjct: 52  PGASPETMSTSVAMPLQRALGTISGIDQISSSSSSGRTTVFAIFKMSKDINDAAREVQAA 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L  + +   +          ++    +                    ++   E
Sbjct: 112 INKAKPQLPSNMRTPPIYKKLNPSSIPIMV-LTLSSETMELSSLYEIASNILAPRLSQVE 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +       +  +  E +P +L     + +++       N                  
Sbjct: 171 GVGEVDVGGGSMPAVRVEVNPKKLSSYGISISEVQNAIANSNKLSP-------------- 216

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                     ++  H    +A+           I                 +   +    
Sbjct: 217 ------RGSIVNNNHQWLISASDTLNKANEYKKIIVKWNANNAIRLKDIAEVFDSVEDEF 270

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           +            I   + + +   T+++       ++A         + +    +   +
Sbjct: 271 NHGFFNKKEAVTLIVRKQEEANVIKTVDSIRNQIKEVKASLPDGVDLNISQDRSPSIRAT 330

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               + T  I   LV+I++ + +   +  ++   ++ ++++ T   +  +G +L + S+ 
Sbjct: 331 LHETELTLLISVMLVIIIVLIFLRGWRATIIPAVAVPISLLGTFVCMFFMGFSLNIISLM 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+++  G  VD +I+V E I        S   + + G     +T+   +I+ ++  + L 
Sbjct: 391 GLIVASGFVVDDSIVVTENISRYIDMGYSPKDAANKGAKEVGTTVLTMSISLILVFLPLL 450

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
                  R F           + + +  +           K K+I     + F       
Sbjct: 451 ILDEMLARLFFEFSFSLSSAVLISLLVSLTLTPTLCAHVLKKKNIATQNENIFLKFYKST 510

Query: 539 AIQFMRARF 547
               ++ RF
Sbjct: 511 LKLALKFRF 519



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 66/188 (35%), Gaps = 3/188 (1%)

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              +  F N       +VR Q +         +   +K+    +     +  ++   P I
Sbjct: 268 DEFNHGFFNKKEAVTLIVRKQEEANVIKTVDSIRNQIKEVKASLPDGVDLNISQDRSPSI 327

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
              L    +  +I   + ++I +     W   +     + + +  T       G   N+ 
Sbjct: 328 RATLHETELTLLISVMLVIIIVLIFLRGWRATIIPAVAVPISLLGTFVCMFFMGFSLNII 387

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
           ++  ++   G+ V+D +VV + +    +      S +D  +K   E     +  S++  +
Sbjct: 388 SLMGLIVASGFVVDDSIVVTENI---SRYIDMGYSPKDAANKGAKEVGTTVLTMSISLIL 444

Query: 782 SVLPMAVW 789
             LP+ + 
Sbjct: 445 VFLPLLIL 452



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 85/209 (40%), Gaps = 8/209 (3%)

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                    +     +  VP++ I+          +E+ ++  + ++++   + I + I +
Sbjct: 807  TLDQATSAIEHTIKSLRVPVNQIEAKFAGSADKFKEVTKQQPLVLLLTIFMLYIVLGILY 866

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + +   L  ++TL            L  ++F++ A+  V  LIG  + + +++ D     
Sbjct: 867  ESFIHPLTILSTLPSAGIGAFLALKLVDMQFSVIALIGVFLLIGIVMKNAIIMIDFALD- 925

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
             +     +S ++ I ++        + T+ AA    LP+ +    G  +     + +  G
Sbjct: 926  -RQRREKLSSKEAIYEACIVRFRPILMTTFAAIFGALPLILATGAGVEMRQPLGVTIVGG 984

Query: 805  IVVAASSSIFIAAPILLFIYD--WRAKNA 831
            ++++   +++    + +++     R KNA
Sbjct: 985  LIMSQLLTLYTTPVMYVYLDKIFNREKNA 1013



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 52/507 (10%), Positives = 138/507 (27%), Gaps = 42/507 (8%)

Query: 27   LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                    FP             LRG   +         +   L  Y D + S    E +
Sbjct: 536  FSSLPKTLFPEQDTGM-------LRGSFKVDKGTSFQTMIPK-LHAYRDIILSDPNVENV 587

Query: 87   GVFSMRQIQNK---ITLSFADSRFKE----NIADKVTLFLQGVNSKLNVDPKKNLLVTTT 139
              +   +       IT+     + +E     + +K+   L GV+        +  +    
Sbjct: 588  SGYVGGRGGASTSYITVQLKPFKDRELSAKQVVEKLRNKLTGVSGARVSLVPQQDIRVGG 647

Query: 140  EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
             ++   +  + ++       +E+   ++R    +I   E      G     +Q+  + D 
Sbjct: 648  GQQEEALY-EYSLRGSDLRLLEKWGNLVRNSFKKI--PEIVNVSNGREDRALQVELKIDR 704

Query: 200  SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
             + + +      +         S+          +         +   EIS +       
Sbjct: 705  EKAKNMGVDMRLLINTINNLYGSRSVSTIYKDLNQYKVILSASKKYAEEISDLEELNFLT 764

Query: 260  NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
                                            +        R+     +     +     
Sbjct: 765  PNGELVP--------------------LSAFAELEVSNTSTRIKQNNGMLSQSITFDLAK 804

Query: 320  SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
                   T+ I   +        ++      +                +   ++ IVL +
Sbjct: 805  GVTLDQATSAIEHTIKSLRVPVNQIEAKFAGSADKFKEVTKQQPLVLLLTIFMLYIVLGI 864

Query: 380  IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER-I 438
            +       L    ++    I     L L+    ++ ++ G+ L IG+ + + I++ +  +
Sbjct: 865  LYESFIHPLTILSTLPSAGIGAFLALKLVDMQFSVIALIGVFLLIGIVMKNAIIMIDFAL 924

Query: 439  REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLS 495
              + R+  S   ++       +  I  +   A+   + L      G    +   +T+   
Sbjct: 925  DRQRREKLSSKEAIYEACIVRFRPILMTTFAAIFGALPLILATGAGVEMRQPLGVTIVGG 984

Query: 496  ILISMFTAISIVRAMMIFIIRYKKMKS 522
            +++S    +     M +++ +    + 
Sbjct: 985  LIMSQLLTLYTTPVMYVYLDKIFNREK 1011


>gi|257487821|ref|ZP_05641862.1| multidrug RND efflux transporter, permease protein MdtC
           [Pseudomonas syringae pv. tabaci ATCC 11528]
          Length = 726

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 66/564 (11%), Positives = 158/564 (28%), Gaps = 39/564 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FRLLPVAPLPNMDFPVIV---------VSASLAGASPEVMASTVATPLERSLGSIAGVNT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  Q   +I L F  +R     A +V   +    + L    +            + +
Sbjct: 80  MTSNSSQGTTRIILQFDLNRDINGAAREVQAAINASRNLLPSGMRSMPTYKKVNPSQAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   ++   +    +            +       +       L  +  E +P  L Q  
Sbjct: 140 MV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGEVQIGGSSLPAVRIELEPQMLSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N  +                   +E   +                  
Sbjct: 199 VSLDDVRTAITGANVRRPKGFVEDDQHNWQVQANDQLETAKD------------------ 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                 +   +    +            + + +A  +   T+ 
Sbjct: 241 --YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIETVA 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA         V          +    + T  I   LV++V+F+ +   + 
Sbjct: 299 QIKAQLPALRAVLPASVSLNVAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ ++++ T A++ LLG +L   S+  ++L  GL VD  I+V E I        
Sbjct: 359 SLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENISRHIHNGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTA 503
               +  +G      T+   N++ +   + + F GG      R F+IT+ +SI++S+  +
Sbjct: 419 DPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSIVVSLIVS 478

Query: 504 ISIVRAMMIFIIRY------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +++   +    ++          +        R     D      MR R   +   ++  
Sbjct: 479 LTLTPMLCARWLKPHDSGKDNAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLLSLLITV 538

Query: 558 ICSICLLFTHGLNYGIDFKGGIQL 581
           + ++ L       +      G  +
Sbjct: 539 VVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     L G   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491


>gi|170735610|ref|YP_001776870.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3]
 gi|169817798|gb|ACA92380.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3]
          Length = 1055

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 73/636 (11%), Positives = 171/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  P+                  ++   
Sbjct: 8   LRRPYTFIVMAIMIVL-----ATPLALMRTPVDVLPAINIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           +   F    +      +        +        +       + +        +    + 
Sbjct: 50  NYSGFSATEMTNRITSVHERILTTTVNNIQHVESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +   +   +     Q+ 
Sbjct: 110 VSSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LADIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  L+    T A +       N         +     
Sbjct: 168 TVPGVQIPFPYGGRTRVVAIDLDPQALQAKGLTPADIVNAVNAQNLVLPTGTAKMGQTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +IS                    ++    +     +      +    A
Sbjct: 228 RIDTNASADTVADIS--------------------NLPVQTINGATTYLREVAAVRDGFA 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLISILKSGDASTLKVVSDLKALLPKVIPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTNLHDAILEGAGEIAVPALVSTLCICIVFV 447

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + + R ++  +   +  SRF 
Sbjct: 448 PMFFLTGVARFLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPQQANTGADHSTSRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I       F R R W + +  +  +              +       LG       D  
Sbjct: 508 RIHHAFNHAFERLRAWYIVLLSILLVRRRFYALCFLGFCVLSTGLVFMLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P D 
Sbjct: 568 NLRLHVRAPTGYRIEETARLADQVERVIRETVPPDE 603



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 54/490 (11%), Positives = 148/490 (30%), Gaps = 23/490 (4%)

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +     +         +   +VL     ++      L A     ++VI   +  S    T
Sbjct: 1   MWIVNLALRRPYTFIVMAIMIVLATPLALMRTPVDVLPAINIPVISVIWNYSGFSATEMT 60

Query: 412 LTLPSIAGIVLGIGL-----AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
             + S+   +L   +        +++     ++   +   +V  ++    S A + +   
Sbjct: 61  NRITSVHERILTTTVNNIQHVESTSLPGIAVVKVFLQPGANVQTAIAQTVSSAQAIVRQM 120

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
              A    V+ +      V    ++   ++       I++       I            
Sbjct: 121 PQGATPPLVITYSASSIPVIQLGLS-SKTLSEQSLADIALNFLRPQLITVPGVQIPFPYG 179

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISIL------------FSICSICLLFTHGLNYGID 574
             +R   I         +       ++ +                +   + T+     + 
Sbjct: 180 GRTRVVAIDLDPQALQAKGLTPADIVNAVNAQNLVLPTGTAKMGQTEYRIDTNASADTVA 239

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +  +      L  V +  +         +        +  L+     ++     
Sbjct: 240 DISNLPVQTINGATTYLREVAAVRDGFAPQTNVVRQNGQRGVLISILKSGDASTLKVVSD 299

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFA 693
           L+ +  K+   +P                  ++  I   +I + +  ++ +     W   
Sbjct: 300 LKALLPKVIPTLPEGLTITPLFDQSVFVNAAVQGVIHEALIAAVLTAMMILLFLGNWRST 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    ++ L I  +L   +  G   N+  +  +   +G  V+D  V  + + +++ L   
Sbjct: 360 LIIAISIPLSIFTSLIALSALGETINIMTLGGLALAVGILVDDATVTIENIERHLHL--- 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             +  D I +   E    ++ +++   I  +PM    G     F +P+A  +V A  +S 
Sbjct: 417 GTNLHDAILEGAGEIAVPALVSTLCICIVFVPMFFLTGVARFLF-VPLAEAVVFAMLASY 475

Query: 814 FIAAPILLFI 823
            ++  ++  +
Sbjct: 476 VLSRTLVPTL 485



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  I+ +   +        + G   ++ A+   +  +G
Sbjct: 890  VAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 949

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +              ++    +   + T++A  I ++PMA+   
Sbjct: 950  VATANSILVVSFARQRLAA---GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1006

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1007 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1035


>gi|258645430|ref|ZP_05732899.1| protein-export membrane protein SecD [Dialister invisus DSM 15470]
 gi|260402781|gb|EEW96328.1| protein-export membrane protein SecD [Dialister invisus DSM 15470]
          Length = 417

 Score =  137 bits (345), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 142/395 (35%), Positives = 229/395 (57%), Gaps = 27/395 (6%)

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  L       I +       ++V   +I Q + I+++R++++G++E  IQR G++RI+I
Sbjct: 40  RQGLDLQGGTHIIMQAEDTEQNKVTPESIVQVINIMQKRVNEMGLTEPIIQREGANRIII 99

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPGE+DP +  + +G TA + F                             E  V ++G
Sbjct: 100 ELPGERDPQKAIETIGKTAVLEFR--------------------------DEEGNVCLTG 133

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             L  A         +P+V + F + G  +F ++T  NIG+ + + LDG +LT PV+N A
Sbjct: 134 EDLKDAREQIGQNR-EPLVALQFSKEGGDKFAKLTAANIGRHVGIYLDGDLLTNPVVNDA 192

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           I  G A I+G  T+E A  LA +LR+G+LP+K++++E R VG  LG DS  K   A   G
Sbjct: 193 ITGGSAVITGQRTLEEAKDLAILLRSGALPVKVSVLEVRTVGPSLGQDSKDKSVVAFAIG 252

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           L L+V FM+ +Y   G VAD ++ + V++ L +L +L ATLTLPSIAGI+L IG+AVD+N
Sbjct: 253 LSLVVFFMLAVYRISGFVADTALLVYVLILLGILYVLHATLTLPSIAGIILSIGMAVDAN 312

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ ER +EE    + +  ++  GF RA+ TIFD+N+T +I + +LFF G   V+GFA +
Sbjct: 313 VLIFERFKEEIASGKLLRLAVQSGFKRAFVTIFDANMTVIITSCILFFLGSATVKGFAFS 372

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +GL + +SMFTAI++ R +++ +I    + +    
Sbjct: 373 LGLGVAVSMFTAITVSRTLLMLLINANWIHNPWWF 407



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 72/168 (42%), Gaps = 4/168 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++   K +V   I    ++ ++   ++      A T L++ +   LG   +  
Sbjct: 232 TVGPSLGQDSKDKSVVAFAIGLSLVVFFMLAVYRIS-GFVADTALLVYVLILLGILYVLH 290

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L ++A ++  IG +V+  V++++R ++ +    +    R  +              
Sbjct: 291 ATLTLPSIAGIILSIGMAVDANVLIFERFKEEIA---SGKLLRLAVQSGFKRAFVTIFDA 347

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +M   I+   +   G + +  FA  +  G+ V+  ++I ++  +L+ +
Sbjct: 348 NMTVIITSCILFFLGSATVKGFAFSLGLGVAVSMFTAITVSRTLLMLL 395



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 46/129 (35%), Gaps = 17/129 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R    L     +   IG+  A   +L                I  GLDL+GG+H++++ 
Sbjct: 9   LRTGKLLQFFVVIGVIIGIFAASIGWL-------------AGNIRQGLDLQGGTHIIMQA 55

Query: 61  DEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116
           ++ +        +    + ++  + + G+    +++   N+I +     R  +   + + 
Sbjct: 56  EDTEQNKVTPESIVQVINIMQKRVNEMGLTEPIIQREGANRIIIELPGERDPQKAIETIG 115

Query: 117 LFLQGVNSK 125
                    
Sbjct: 116 KTAVLEFRD 124


>gi|221196516|ref|ZP_03569563.1| acriflavin resistance protein [Burkholderia multivorans CGD2M]
 gi|221203185|ref|ZP_03576204.1| putative heavy metal efflux pump, CzcA family [Burkholderia
           multivorans CGD2]
 gi|221177119|gb|EEE09547.1| putative heavy metal efflux pump, CzcA family [Burkholderia
           multivorans CGD2]
 gi|221183070|gb|EEE15470.1| acriflavin resistance protein [Burkholderia multivorans CGD2M]
          Length = 1055

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 71/636 (11%), Positives = 166/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  PS                  ++   
Sbjct: 8   LRRPYTFIVMAIMIVL-----ATPLALMRTPVDVLPSINIPV-----------VSVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
             + F    +      +        +        +       + +        +    + 
Sbjct: 50  SYNGFSAKEMSDRITSVHERSLTTTVNNIQHIESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +       +     Q+ 
Sbjct: 110 VASAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LGDIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  LR    T A +       N +       +     
Sbjct: 168 TIPGAQIPFPYGGRTRVVAIDIDPQALRAKGLTPADVVNAVNAQNLTLPTGTAKMGPTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +I+                     +    +     +     ++    +
Sbjct: 228 RIDTNASADTIADIT--------------------HLPIQTVNGATTYLGEVASVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLVSIQKSGDASTLKVVSDLKALLPRVEPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L +LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIVLSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I         +  ++  G        F S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTDLHDAILEGAGEIAVPAFVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + + R  +          RF 
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPPQASVGTERATGRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +       F R R W + +  +  +              +       LG       D  
Sbjct: 508 RLHRAFNAAFERLRAWYIVLLSMLLVRRRFYATCFLGFCLLSTGLVFVLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++         P D 
Sbjct: 568 NIRLHMRAPTGYRIEETARLADRVERAVRDIVPPDE 603



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 89/278 (32%), Gaps = 5/278 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              +         +   + T+     I     + +  +      L  V S  +       
Sbjct: 212 NLTLPTGTAKMGPTEYRIDTNASADTIADITHLPIQTVNGATTYLGEVASVRDGFSPQTN 271

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +        +   +     ++     L+ +  ++   +P                  +
Sbjct: 272 VVRQNGQRGVLVSIQKSGDASTLKVVSDLKALLPRVEPTLPEGLTITPLFDQSVFVNAAV 331

Query: 667 RKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           +  I   +I + +  ++ +     W   L    ++ L I  +L   +  G   N+  +  
Sbjct: 332 QGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIVLSALGETINIMTLGG 391

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  V+D  V  + + +++ L        D I +   E    +  +++   I  +P
Sbjct: 392 LALAVGILVDDATVTIENIERHLHL---GTDLHDAILEGAGEIAVPAFVSTLCICIVFVP 448

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           M    G     F +P+A  +V A  +S  ++  ++  +
Sbjct: 449 MFFLTGVARYLF-VPLAEAVVFAMLASYVLSRTLVPTL 485



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 55/149 (36%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  ++ +   +        + G   ++ A+   +  +G
Sbjct: 890  VAMAIVLVYLLIVVNFQSWLDPLIIVSAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 949

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R   +             ++    +   + T++A  I ++PMA+   
Sbjct: 950  VATANSILVVSFAR---QRLAAGAPPLAAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1006

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1007 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1035


>gi|66045858|ref|YP_235699.1| acriflavin resistance protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63256565|gb|AAY37661.1| Acriflavin resistance protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 1014

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/511 (10%), Positives = 147/511 (28%), Gaps = 35/511 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +  +  FP       +             LE    + +   +    ++  + L+      
Sbjct: 31  RLGIQDFPDTDLPAVV---------ISASLEGAAPEQLETEVARKLEDKLTSLRLLKHVT 81

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             + +    I + F   +      ++V   +    ++L  +     +   T    +++  
Sbjct: 82  TQITEGSVLINVIFDIDKDGNEALNEVRNAVDSAAAELPANLDTPSVTRLTTNTTALLTY 141

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
             +  ++   A   S  +  +   Q+       +      +  ++  + DP+ +  L  +
Sbjct: 142 VVDAPRMDEEA--LSWFVDNELSKQLLTVRGVAKISRVGGVDREVQVDLDPALMAGLGLS 199

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
              ++           G    +   + +      ++D   +  I +              
Sbjct: 200 VTDIADRLRAMQKDNSGGQGDLGSGQQALRVLGGIDDPAALGAIRIPV------------ 247

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                      R         +    A            +           S        
Sbjct: 248 --------SDGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSDVGVTRDL 299

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                        +++       V   + +             L ++V++  +   +  +
Sbjct: 300 RQAVNEFAIQHPDVRIEEAS-NAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATI 358

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   ++ L++I T  ++   G +L   S+  + L IG+ VD  I+  E I    R  ++ 
Sbjct: 359 IVATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENIARHLRMGKTP 418

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAIS 505
             +           +  + +T +   +   F GG +    R F +T   +++ S+  A  
Sbjct: 419 RQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVARL 478

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +   M  ++++ +     D   + R+     
Sbjct: 479 LTPMMAAYLLKPRPHGEHDSGLMRRYLGWIH 509



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 83/254 (32%), Gaps = 6/254 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I++ V   R + +  + +  ++    +               ++      V  TR L 
Sbjct: 241 GAIRIPVSDGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSDVGVTRDLR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +     P   I+        +         +      +A+L+  W    W   +  
Sbjct: 301 QAVNEFAIQHPDVRIEEASNAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATIIV 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L I  T G     G   N  ++ A+  +IG  V+D +V  + +    +      +
Sbjct: 361 ATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENI---ARHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            R    ++ +E     + T++      LP A  GG        F +  +  ++ +   + 
Sbjct: 418 PRQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVAR 477

Query: 814 FIAAPILLFIYDWR 827
            +   +  ++   R
Sbjct: 478 LLTPMMAAYLLKPR 491



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 84/222 (37%), Gaps = 6/222 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +      V+E  ++        + ++  E    ++  EL     + + 
Sbjct: 785  DRLRNITLSIELNGSNLGEVMEQARQLPVMQNLPAQVKLVEQGELQLMSELFGNFSLAMA 844

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +    +   + + F  +   L  ++ L L +   L    + G+ F++ +V  +L L+G  
Sbjct: 845  VGVFCIYAVLVLLFHDFMQPLTILSALPLSLGGALLALLIGGMSFSMASVIGLLMLMGIV 904

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGS 792
              + +++ +     M     ++S  D +  + ++     + T++A    +LP A+ WGG 
Sbjct: 905  TKNSILLVE--YAIMARRAPTVSRYDALIDACHKRARPILMTTIAMGAGMLPTALGWGGE 962

Query: 793  V--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                   A+ +  G++ +   S+ +   I  ++ D      R
Sbjct: 963  SGFRQPMAVVVIGGLLASTVLSLLVVPVIFTYVDDGHEAFKR 1004


>gi|170741980|ref|YP_001770635.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
 gi|168196254|gb|ACA18201.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
          Length = 1036

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 65/519 (12%), Positives = 152/519 (29%), Gaps = 35/519 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                + RFP+                  +         +   +  + ++  + +K    
Sbjct: 31  FRTLPITRFPNIDVPLV---------SVSINQPGAAPSELQTQVTKWVEDAVAGVKGVKH 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++ +  +  T+ F      +   + V   +  + + L    ++ ++       + I+
Sbjct: 82  ITSAITEGSSTTTVEFRLEVNTDRAVNDVKDAVAKIRTNLPRTIEEPIVNRVEIAGLPIM 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +       +     + S  +      QI              +  ++     P RL  L 
Sbjct: 142 VYGATAPAMAPE--DLSWFVDDVVARQIQGLRGVGGVGRLGGVNREVRVTLKPDRLLSLG 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A ++    L +    G    +     S            ++   +            
Sbjct: 200 ITAADVNRQLRLTSADMAGGRAELGGQEQSIRTLAASASLDTLAATTIVLP--------- 250

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                      G R+        +            L    +     S  +  S     +
Sbjct: 251 -----------GGRKVRLDDLATLTDGAEEPRVFARLNGEPVVALAISRASGASDASVAQ 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA    +  ++++        G+           A L ++V+F+ +   + 
Sbjct: 300 LVARKIDELRAAHPNVHFDLIDTSVTNTI-GNYESAMHGLMEGAALAVLVVFLFLRDWRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+A  ++ L+V  T   +S +G +L   S+  I L  G+ VD  I+  E I    R  +
Sbjct: 359 TLIAAVALPLSVFPTFWAMSAMGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHVRLGK 418

Query: 447 SVFCSL---DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
           S + +          A   I  + +        +    G   + F +T+  ++ +S+  A
Sbjct: 419 SPYRAAIEGADEIGLAVIAITATLVAIFAPVSFMGGIAGQYFKQFGLTIAAAVFMSLLVA 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             I   M  + +R          P+ R +      +++ 
Sbjct: 479 RLITPMMAAYFMRDHGHAEEAPGPVMRTYTRVVAWSVRH 517



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 88/255 (34%), Gaps = 7/255 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +        +V  + +  + +G         ++   V L+     S A    +       
Sbjct: 758  LKVPTKTGAAVPLTAVADISLGRGPTAIDRYDRAVRVALEANLQGSDALAEAIAKALATP 817

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
                    ++  +    ++  E+     + +    + +L  + + F  +   L  + +L 
Sbjct: 818  AAKTLPPGVELRQTGDAEVMGEVFEGFALAMGAGLMMVLGVLILLFGSFLQPLTILFSLP 877

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   +    +F    ++  V  +L L+G    + +++ D   + M      +     I
Sbjct: 878  LSIGGAILGLLIFNRPISMPVVIGILMLMGVVTKNAIMLVDFAVEEMA---RGVDRITAI 934

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +  +     V T++A    ++P A+    GG      AI +  G++V+   S+     
Sbjct: 935  TDAGRKRARPIVMTTIAMAAGMVPSAMALGIGGEFRSPMAIAVISGLIVSTLLSLLFVPA 994

Query: 819  ILLFIYDWRAKNARI 833
            I + + D      R+
Sbjct: 995  IFVLMDDLARLFGRL 1009



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 74/234 (31%), Gaps = 7/234 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + L         F   +GE    + +    G S A    L   K         +   +  
Sbjct: 261 ATLTDGAEEPRVFARLNGEPVVALAISRASGASDASVAQLVARKIDELRAAHPNVHFDLI 320

Query: 656 IVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +       + G++  +A+A+L+       W   L A   L L +  T    +  
Sbjct: 321 DTSVTNTIGNYESAMHGLMEGAALAVLVVFLFLRDWRATLIAAVALPLSVFPTFWAMSAM 380

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N  ++ A+  + G  V+D +V  + +   ++      S      +  +E     + 
Sbjct: 381 GFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHVRLGKSPYRAAIEGADEIGLAVIA 437

Query: 775 TSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +        P++  G   G     F + +A  + ++   +  I   +  +   
Sbjct: 438 ITATLVAIFAPVSFMGGIAGQYFKQFGLTIAAAVFMSLLVARLITPMMAAYFMR 491


>gi|15599402|ref|NP_252896.1| Resistance-Nodulation-Cell Division (RND) efflux transporter
           [Pseudomonas aeruginosa PAO1]
 gi|107103724|ref|ZP_01367642.1| hypothetical protein PaerPA_01004795 [Pseudomonas aeruginosa PACS2]
 gi|218889464|ref|YP_002438328.1| putative Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa LESB58]
 gi|9950419|gb|AAG07594.1|AE004837_5 probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa PAO1]
 gi|218769687|emb|CAW25447.1| probable Resistance-Nodulation-Cell Division (RND) efflux
           transporter [Pseudomonas aeruginosa LESB58]
          Length = 1029

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 64/643 (9%), Positives = 186/643 (28%), Gaps = 32/643 (4%)

Query: 54  SHLVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE 109
           S + +  +        +         +  S ++       +  Q ++ +T+    +R   
Sbjct: 43  STITVTTEYPGASADLMQGFVTQPIAQAVSSVEGIDYLSSTSVQGRSVVTIRMLLNRDST 102

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
               +    +  V  KL      +++  ++ +  ++     +   +   A   +  + R 
Sbjct: 103 QAMTETMAKVNSVRYKLPERAYDSVIERSSGETTAVAYVGFSSKTLPIPA--LTDYLSRV 160

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
                   +   +        + +    D  RL     T + ++      N      M  
Sbjct: 161 VEPMFSSIDGVAKVQTFGGQRLAMRLWLDADRLAGRGLTASDVAEAIRRNNYQAAPGMVK 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
            +++  +           +++ +                   +     G           
Sbjct: 221 GQYVLSNVRVN------TDLTNVDDFRE--------------MVIRNDGNGLVRLRDVGT 260

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +    A      ++                +    ++    L   ++    P     +  
Sbjct: 261 VELGAAATETSALMDGDPAVHLGLFPTPTGNPLVIVDGIRKLLPEIQKTLPPDVRVDLAY 320

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   S      T      +V++V+++ +   +  L+   +I L+++   AL+   G
Sbjct: 321 ETSRFIQASIDEVVRTLVEALLIVVLVIYLCLGSLRSVLIPVATIPLSMLGAAALMLAFG 380

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            ++ L ++  +VL IGL VD  I+V E +     + +S   +  +G       +    IT
Sbjct: 381 FSVNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPVAAALIGAREVAGPVIAMTIT 440

Query: 470 ALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--D 524
                  +   G   G   R FA+T+  ++++S   A+++   M   +++  + +     
Sbjct: 441 LAAVYTPIGLMGGLTGALFREFALTLAGAVIVSGVVALTLSPVMSSLLLQAHQNEGRMGR 500

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                   L      +         +   +   +C    L        +         + 
Sbjct: 501 AAEWFFGGLTRRYGQVLEFSLGHRWLTGGLALLVCISLPLLYSMPKRELAPTEDQAAVLT 560

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A +    + +       +  D  + +     +  +        +      L   +K+  +
Sbjct: 561 AIKAPQHANLDYVELFARKLDQVYTSIPETVSTWIINGTDGPAASFGGINLAAWEKRERD 620

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              + +    ++ G      +    +  +  S   + + + +R
Sbjct: 621 ASAIQSELQGKV-GDVEGSSIFAFQLAALPGSTGGLPVQMVLR 662



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 54/409 (13%), Positives = 127/409 (31%), Gaps = 17/409 (4%)

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQS-VFCSLDMGFSRAYS-TIFDSNITALIATVVL 477
           + + + L  DS   + E + + N         + D    R+   T   + +     T+ +
Sbjct: 91  VTIRMLLNRDSTQAMTETMAKVNSVRYKLPERAYDSVIERSSGETTAVAYVGFSSKTLPI 150

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
                   R           ++        R  M   +   ++    +        I   
Sbjct: 151 PALTDYLSRVVEPMFSSIDGVAKVQTFGGQRLAMRLWLDADRLAGRGLTASDVAEAIRRN 210

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                         +S +     +  +        I   G   + +     V+L    + 
Sbjct: 211 NYQAAPGMVKGQYVLSNVRVNTDLTNVD-DFREMVIRNDGNGLVRLRDVGTVELGAAATE 269

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
             +L  GD +             L    G       + + +   +   +   T +  +  
Sbjct: 270 TSALMDGDPAVHLGLFPTPTGNPLVIVDGIRKLLPEIQKTLPPDVRVDLAYETSRFIQAS 329

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
             ++ R L+   ++ V++      IY+ +       L  + T+ L +         FG  
Sbjct: 330 IDEVVRTLVEALLIVVLV------IYLCL-GSLRSVLIPVATIPLSMLGAAALMLAFGFS 382

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            NL  + A++  IG  V+D +VV + +    +      S          E  G  +  ++
Sbjct: 383 VNLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGKSPVAAALIGAREVAGPVIAMTI 439

Query: 778 AAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  P+ + G   G++   FA+ +A  ++V+   ++   +P++  +
Sbjct: 440 TLAAVYTPIGLMGGLTGALFREFALTLAGAVIVSGVVAL-TLSPVMSSL 487



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 85/254 (33%), Gaps = 10/254 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V       + +      +LQ+       FD +    ++    PG S+ Q         + 
Sbjct: 765  VRTQDGNLVPLSTVVRVALQVEPNKLIQFDQQNAATLQAIPAPGVSMGQAVAFLDDVARG 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L    +   + + + + + +  +++     L  + T+ 
Sbjct: 825  LPAGFSHDWQSDSRQYTQEGNTL----VFAFLAALVVIYLVLAAQYESLADPLIILITVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     N+     ++TLIG      +++ +   +        +  R  I
Sbjct: 881  LSICGALLPLALGYATMNIYTQIGLVTLIGLISKHGILMVEFANE--LQLHERLDRRAAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
             ++    L   + T+ A    ++P+    G      F + +    G++V    ++F+   
Sbjct: 939  LRAAQIRLRPVLMTTAAMVFGLVPLLFASGAGAASRFGLGVVIVSGMLVGTLFTLFVLPT 998

Query: 819  ILLFIYDWRAKNAR 832
            +   +    A+  +
Sbjct: 999  VYTLLARNHAEVDK 1012


>gi|320536404|ref|ZP_08036443.1| protein-export membrane protein SecD [Treponema phagedenis F0421]
 gi|320146746|gb|EFW38323.1| protein-export membrane protein SecD [Treponema phagedenis F0421]
          Length = 582

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 126/453 (27%), Positives = 219/453 (48%), Gaps = 32/453 (7%)

Query: 108 KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
           ++ I          V   L++    ++++      ++  LS   + Q    A++ +++ I
Sbjct: 129 RDRILAIKENQANAVKLGLDLSGGMSIIIKADLTAVTKGLSIAEVGQAKKDAMKLAIDTI 188

Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
             RID+ G+SE  I++ G  RI +++PG  D  R+  ++     ++FH V    ++K F 
Sbjct: 189 SGRIDKFGLSEPVIRQQGEDRIYVEIPGAADTDRINSIIMGRGLLAFHIVDDEATQKFFD 248

Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK----------------------- 264
           +       +    Y + D   I          + D                         
Sbjct: 249 YYTANPGSTFDADYNLLDPSIIPEDTEVLGVYHKDAYGLDTRDGFLAIKKEPALAGKHIK 308

Query: 265 --------THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316
                   T++P+V    D  G   F +VT  N+GK LA+V D ++ +AP I + I  G 
Sbjct: 309 NVTVGAGRTNEPLVLFELDTEGGNIFSDVTTKNVGKRLAIVSDQKIKSAPNIKEPITGGS 368

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
             ISG F  + A  L  +LR   L + L +  ++ +GA++G + I +G  A+  GLV ++
Sbjct: 369 GSISG-FNADEANNLKTVLRTAWLNVPLQLENQQVIGANMGEEGINQGKRALTWGLVAVL 427

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
            FM++ Y + G+ A     L++ +  ++LS    TLTLPSIAG++L IG+AVD+N+++ E
Sbjct: 428 AFMLLWYLEAGINACIVQVLDLYIMFSVLSAFNLTLTLPSIAGMILTIGMAVDANVIIFE 487

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           RI+EE    +S   S+  GF+ A+  I DSNIT  IA + L   G G ++GFA ++ + +
Sbjct: 488 RIKEELAIGKSREASIAAGFNHAFWAIMDSNITTFIAALFLSVLGTGPIKGFAYSLAIGV 547

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + S+FTA+ + R +  F       + I I+   
Sbjct: 548 VSSVFTALFVSRLIFDFGTEILHKQKIRISWRQ 580



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 101/252 (40%), Gaps = 7/252 (2%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G   +  +   +        S V +     ++  +S Q      N    +    G     
Sbjct: 315 GRTNEPLVLFELDTEGGNIFSDVTTKNVGKRLAIVSDQKIKSAPNIKEPITGGSGSISGF 374

Query: 632 TRVLEMVKKKI---TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                   K +     +     ++N +++G  +  E I +G   +    +A+L ++ + +
Sbjct: 375 NADEANNLKTVLRTAWLNVPLQLENQQVIGANMGEEGINQGKRALTWGLVAVLAFMLLWY 434

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                + A    +LD+       + F +   L ++A ++  IG +V+  V++++R+++ +
Sbjct: 435 -LEAGINACIVQVLDLYIMFSVLSAFNLTLTLPSIAGMILTIGMAVDANVIIFERIKEEL 493

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            +  +       I    N      + +++  FI+ L ++V G   I  FA  +A G+V +
Sbjct: 494 AIGKSR---EASIAAGFNHAFWAIMDSNITTFIAALFLSVLGTGPIKGFAYSLAIGVVSS 550

Query: 809 ASSSIFIAAPIL 820
             +++F++  I 
Sbjct: 551 VFTALFVSRLIF 562


>gi|310766578|gb|ADP11528.1| Acriflavin resistance protein [Erwinia sp. Ejp617]
          Length = 1032

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 65/574 (11%), Positives = 155/574 (27%), Gaps = 37/574 (6%)

Query: 56  LVLEVDEDDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           +++           +              +           Q  + I L F+  R     
Sbjct: 45  ILVTASLPGASPETMAATVATPLERSLGQIAGISEMTSQSSQGSSTIILQFSLDRDINGA 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
           A  V   +    S L                 + ++    +      + E       +  
Sbjct: 105 ARDVQAGINAARSLLPSSMPSLPTYRKANPSDAPIVM-LALSSSTRTSAELYDLAESKIQ 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            +I       Q       L  +  +  P +L +   +   +         +K   M    
Sbjct: 164 QRISQVNGVGQVSLRGSALPGVRIDLQPQQLSRYGVSLDTVREAIANSTTNKPKGMLEGE 223

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                      ++                      K   ++       R         + 
Sbjct: 224 RQSWMVDGNGQLDRA--------------------KQYRNLVVSYQNGRTIRLSDVATVY 263

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             +    +              +  A  +   TI+       ++           +    
Sbjct: 264 DAVEDKYNVGYYNGVPSVMIGVTRSAGANMLQTIDGIKAQMPLIEKELPADMKLAMVVDR 323

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S    + T  I   LV+ V+F+ +   +  ++   ++ L++I T A++ LL  +
Sbjct: 324 APNVRASLYDTEETLLIATLLVIGVVFIFLRDIRAVVIPALALPLSLIGTCAVMYLLDYS 383

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L   S+  +++  G  VD  I+V E I        S   +   G      T+    ++ +
Sbjct: 384 LDNLSLMALIIATGFVVDDAIVVLENITRHIEAGLSPVRAAITGAKEVSFTVLSMTLSLV 443

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-------- 520
              + +   G   G   R FA+T+ +S++ISM  ++S+   +   +++ +          
Sbjct: 444 AVFIPILLMGSIVGRLFREFAVTLTVSLIISMLVSLSLTPMLCSRLLKRRSPLERRPPPL 503

Query: 521 -KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            + I+             +       R     + +   +            +     G +
Sbjct: 504 SRWIERGLNHLLAQYAAALGWVMRHQRLTLFSLILTVLLNIFLYSVVQKGFFPSQDTGLL 563

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
              + A++ V    +   ++       +    DG
Sbjct: 564 MGMMRADQNVSFQAMEPKMQQFASLIAADPAVDG 597



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/257 (10%), Positives = 81/257 (31%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMV 638
            +     R + LS V +  ++++               +   +    +       +   +
Sbjct: 245 VVSYQNGRTIRLSDVATVYDAVEDKYNVGYYNGVPSVMIGVTRSAGANMLQTIDGIKAQM 304

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
                E+     +       P +   L       +I + + + +           +    
Sbjct: 305 PLIEKELPADMKLAMVVDRAPNVRASLYDTEETLLIATLLVIGVVFIFLRDIRAVVIPAL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L L +  T     L     +  ++ A++   G+ V+D +VV + +    +     +S  
Sbjct: 365 ALPLSLIGTCAVMYLLDYSLDNLSLMALIIATGFVVDDAIVVLENI---TRHIEAGLSPV 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E     +  +++     +P+ + G   G +   FA+ +   ++++   S+ +
Sbjct: 422 RAAITGAKEVSFTVLSMTLSLVAVFIPILLMGSIVGRLFREFAVTLTVSLIISMLVSLSL 481

Query: 816 AAPILLFIYDWRAKNAR 832
              +   +   R+   R
Sbjct: 482 TPMLCSRLLKRRSPLER 498


>gi|224532799|ref|ZP_03673415.1| acriflavine resistance protein [Borrelia burgdorferi WI91-23]
 gi|224512287|gb|EEF82672.1| acriflavine resistance protein [Borrelia burgdorferi WI91-23]
          Length = 1071

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 167/514 (32%), Gaps = 33/514 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K       +  +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSTSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKIPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVINEIEKLKLSMPKDMKLEIASDSTDFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+  +  +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFCLMYFVNISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G   + F  T+ +S+ +S+  AI +V  +
Sbjct: 462 ELGVYGDFFKDFTFTIVISLGVSLLVAIFLVPVL 495



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ + +  + +   +   +   + L          T+V   V   I   VP       +
Sbjct: 799  SSIATFEKTNKAESIYRENQALTIYLNAGISPDDNLTQVTAKVVDFINNKVPHKEGITLK 858

Query: 656  IVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            + G       I     + ++++ I +   +  +F+ +      I T+ L     +    L
Sbjct: 859  VEGEYNEFSNIMNQFKIIIMMAVIVVFGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFL 918

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++ A   +L L+G  VN  +V+ D       L       R+ I +S    L   +
Sbjct: 919  AGEKLSIFAAIGMLMLVGVVVNTGIVLVD---YTGLLIKRGFGLREAIIESCRSRLRPIL 975

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +S+ + I ++PMA     G  ++   A     G+  +   ++F    +     +
Sbjct: 976  MSSLTSIIGLIPMAFSSGSGNELLKPIAFTFIGGMTASTFLTLFFIPMLFEIFSN 1030



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V+  ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVINEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMKLEIASDSTDFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFCLMYFVNISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F   +   + V+   +I
Sbjct: 430 SSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFTFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511


>gi|146306710|ref|YP_001187175.1| acriflavin resistance protein [Pseudomonas mendocina ymp]
 gi|145574911|gb|ABP84443.1| acriflavin resistance protein [Pseudomonas mendocina ymp]
          Length = 1048

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/505 (13%), Positives = 136/505 (26%), Gaps = 41/505 (8%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           ++       G L A          +  P                   + LE    +    
Sbjct: 16  LMILAFLIFGGLAA----YVAIPKESNPDVAIPIIY---------VSVTLEGISPEDGER 62

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            L    ++    L+          +    +TL F      +     V   +    SKL  
Sbjct: 63  LLVRPLEQELRSLEGVKEMRSVSSEGHASVTLEFDAGFDAKVALADVREKVDTARSKLPE 122

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
           +  +  +         ++    +     +  +     I R+  + I      +       
Sbjct: 123 EADEPTVNEVNVALFPVLSIGLSGPIAEAELV----YIARRLKENIEGIAEVLSVEIGGD 178

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
               L    DP  L        ++                          N  LV     
Sbjct: 179 REDLLEIVVDPQVLDSYGIDYNELFNLV--------------------SRNNRLVAAGSL 218

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
            +G            +  + V+ +    +G          +I +          +     
Sbjct: 219 DTGAGRMSMKVPGVIEDLEDVMKMPIKVVGDSVVTFADVASIRRTFKDPTGFARINGQPA 278

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                + ++  +   TIE    L    +    P                           
Sbjct: 279 IVLEVAKRSGANIIETIEQVKALMERAQPLLPPGVEVSYIMDQSQEVRNMLGDLLNNVLT 338

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              LVLI++   +      L+   +I    +  + L+ +LG TL +  +  ++L  G+ V
Sbjct: 339 AIVLVLILVVASMGMR-SALLVGLTIPGAFLTGILLIWMLGFTLNIVVLFSLILVAGMLV 397

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAV 485
           D  I+V+E       + QS   +     +R    +  S  T L+  + L F+    G  +
Sbjct: 398 DGAIVVSELADRYLHQGQSPRQAWANAATRMAWPVIASTATTLVVFLPLLFWPGVVGQFM 457

Query: 486 RGFAITMGLSILISMFTAISIVRAM 510
           +    T+ L +L S+  A+  +  +
Sbjct: 458 KYLPATVILCLLASLAMALVFLPVL 482



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 90/256 (35%), Gaps = 10/256 (3%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            ++    + + V+ +  V  + V S   + +      +        L   +    + +  
Sbjct: 235 DLEDVMKMPIKVVGDSVVTFADVASIRRTFKDPTGFARINGQPAIVLEVAKRSGANIIET 294

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              ++ + ++   ++P     +  +   +  R ++   +  V+ + + +LI +       
Sbjct: 295 IEQVKALMERAQPLLPPGVEVSYIMDQSQEVRNMLGDLLNNVLTAIVLVLILVVASMGMR 354

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNM 748
            AL    T+       +    + G   N+  + +++ + G  V+  +VV    DR     
Sbjct: 355 SALLVGLTIPGAFLTGILLIWMLGFTLNIVVLFSLILVAGMLVDGAIVVSELADRY---- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                  S R     +        + ++    +  LP+  W G V+G F   +   +++ 
Sbjct: 411 --LHQGQSPRQAWANAATRMAWPVIASTATTLVVFLPLLFWPG-VVGQFMKYLPATVILC 467

Query: 809 ASSSIFIAAPILLFIY 824
             +S+ +A   L  + 
Sbjct: 468 LLASLAMALVFLPVLG 483



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFALFGIEFNLTAV-AAVL 727
           +   I++   M I +  +F   +    +   ++L     L    + G  F +  V   ++
Sbjct: 843 MTAFIVAIFLMAIILVTQFNSLYQAALVLSAIVLSTAGVLMGLLINGQSFGIVMVGMGLI 902

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            L G  VN+ +++ D      +L    +  R+   ++ +  L   + T++   + ++PM 
Sbjct: 903 ALAGIVVNNNIILIDTYN---QLRRQGLEPREAALETGSLRLRPVLLTAVTTILGLMPMV 959

Query: 788 VW 789
           + 
Sbjct: 960 LS 961


>gi|152985133|ref|YP_001346277.1| RND efflux transporter [Pseudomonas aeruginosa PA7]
 gi|150960291|gb|ABR82316.1| probable RND efflux transporter [Pseudomonas aeruginosa PA7]
          Length = 1029

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 64/643 (9%), Positives = 184/643 (28%), Gaps = 32/643 (4%)

Query: 54  SHLVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE 109
           S + +  +        +         +  S ++       +  Q ++ +T+    +R   
Sbjct: 43  STITVTTEYPGASADLMQGFVTQPIAQAVSSVEGIDYLSSTSVQGRSVVTIRMLLNRDST 102

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
               +    +  V  KL      +++  ++ +  ++     +   +   A   +  + R 
Sbjct: 103 QAMTETMAKVNSVRYKLPERAYDSVIERSSGETTAVAYVGFSSKTLPIPA--LTDYLSRV 160

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
                   +   +        + +    D  RL     T + ++      N      M  
Sbjct: 161 VEPMFSSIDGVAKVQTFGGQRLAMRLWLDADRLAGRGLTASDVAEAIRRNNYQAAPGMVK 220

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
            +++  +           +++ +                   +     G           
Sbjct: 221 GQYVLSNVRVN------TDLTNVDDFRE--------------MVIRNDGNGLVRLRDVGT 260

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +    A      ++                +    ++    L   ++    P     +  
Sbjct: 261 VELGAAATETSALMDGEPAVHLGLFPTPTGNPLVIVDGIRKLLPEIQKTLPPDVRVDLAY 320

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   S      T      +V++V+++ +   +  L+   +I L+++   AL+   G
Sbjct: 321 ETSRFIQASIDEVVRTLVEALVIVVLVIYLCLGSLRSVLIPVATIPLSMLGAAALMLAFG 380

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            ++ L ++  +VL IGL VD  I+V E +     + +S   +  +G       +    IT
Sbjct: 381 FSVNLLTLLAMVLAIGLVVDDAIVVVENVHRHIEEGKSPVAAALIGAREVAGPVIAMTIT 440

Query: 470 ALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--D 524
                  +   G   G   R FA+T+  ++++S   A+++   M   +++  + +     
Sbjct: 441 LAAVYTPIGLMGGLTGALFREFALTLAGAVIVSGVVALTLSPVMSSLLLQAHQNEGRMGR 500

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                   L      +         +   +   +C    L        +         + 
Sbjct: 501 AAEWFFGGLTRRYGQVLEFSLGHRWLTGGLALLVCISLPLLYSMPKRELAPTEDQAAVLT 560

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A +    + +       +  D  + +        +        +      L    K+  +
Sbjct: 561 AIKAPQHANLDYVELFARKLDQVYTSIPETVGTWIINGTDGPAASFGGINLAAWDKRERD 620

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              + +    ++ G      +    +  +  S   + + + +R
Sbjct: 621 ASAIQSELQGKV-GDVEGSSIFAFQLAALPGSTGGLPVQLVLR 662



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 95/270 (35%), Gaps = 8/270 (2%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              +  +  +     +D    + +    N  V L  V +        + S          
Sbjct: 222 QYVLSNVRVNTDLTNVDDFREMVIRNDGNGLVRLRDVGTVELGAAATETSALMDGEPAVH 281

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L       G+ +     +  +  +I + +P     +      +  +  I + +  ++ + 
Sbjct: 282 LGLFPTPTGNPLVIVDGIRKLLPEIQKTLPPDVRVDLAYETSRFIQASIDEVVRTLVEAL 341

Query: 678 IAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
           + +++ I++        L  + T+ L +         FG   NL  + A++  IG  V+D
Sbjct: 342 VIVVLVIYLCLGSLRSVLIPVATIPLSMLGAAALMLAFGFSVNLLTLLAMVLAIGLVVDD 401

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV + +    +      S          E  G  +  ++       P+ + G   G++
Sbjct: 402 AIVVVENVH---RHIEEGKSPVAAALIGAREVAGPVIAMTITLAAVYTPIGLMGGLTGAL 458

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              FA+ +A  ++V+   ++   +P++  +
Sbjct: 459 FREFALTLAGAVIVSGVVAL-TLSPVMSSL 487



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 80/247 (32%), Gaps = 10/247 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V       + +       L++       FD +    ++    PG S+ Q         + 
Sbjct: 765  VRTQDGNLVPLSTVVRVELKVEPNKLIQFDQQNAATLQAIPAPGVSMGQAVAFLDEVARG 824

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLI 701
                     Q+      +    L        + + + + + +  +++     L  + T+ 
Sbjct: 825  LPAGFSHDWQSDSRQYTQEGNTLA----FAFLAALVVIYLVLAAQYESLADPLIILITVP 880

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     N+     ++TLIG      +++ +   +        +  R  I
Sbjct: 881  LSICGALLPLALGYATMNIYTQIGLVTLIGLISKHGILMVEFANE--LQVHERLDRRAAI 938

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + T+ A    ++P+      G +      + +  G++V    ++F+   
Sbjct: 939  LRAAQIRLRPVLMTTAAMVFGLVPLLFASGAGAASRFGLGVVIVCGMLVGTLFTLFVLPT 998

Query: 819  ILLFIYD 825
            +   +  
Sbjct: 999  VYTLLAR 1005


>gi|3068786|gb|AAC14433.1| RND pump protein [Helicobacter pylori]
          Length = 1026

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 64/568 (11%), Positives = 154/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDLPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S                  S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPRY-EIRPFLDTTSYIRTSIEDVKFDLILG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESRYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     L     
Sbjct: 513 HKLIISIAVVLVFVGSLFVASKLGMEFM 540



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/378 (11%), Positives = 113/378 (29%), Gaps = 20/378 (5%)

Query: 472  IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
            ++ V L   GG +          S      +  ++ + ++       K++    +     
Sbjct: 643  LSEVSLLGGGGDSSPFQTFVFSHSQEAVDKSVANLKKFLLESPELKGKIEGYHTSTSESQ 702

Query: 532  FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
              +   I  Q                  +        +      +  + + V  ++ V +
Sbjct: 703  PQLQLKILRQNANKYGVSAQTIGAVVSSAFSGTSQASVFKEDGKEYDMIIRVPDDKRVSV 762

Query: 592  SVVRS-----------NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              ++             L++L     +       +    R         A   + E++ +
Sbjct: 763  EDIKRLQVRNKYDKLMFLDALVEITETKSPSSISRYNRQRSVTVLAQPKAGISLGEILTQ 822

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAI 697
                               +        G   V ++   +LIY+    +          +
Sbjct: 823  VSKNTKEWLVEGANYRFTGEADNAKETNGEFLVALATAFVLIYMILAALYESILEPFIIM 882

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             T+ L  +       L     ++ ++  ++ LIG    +  ++ D   +  K     ++ 
Sbjct: 883  VTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIGMVGKNATLLIDVANEERK---KGLNI 939

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++ I  +    L   + T++A    +LP+A+    G ++     I M+ G++++   S+ 
Sbjct: 940  QEAILFAGKTRLRPILMTTIAMVCGMLPLALASGDGAAMKSPIGIAMSGGLMISMVLSLL 999

Query: 815  IAAPILLFIYDWRAKNAR 832
            I       +     K  R
Sbjct: 1000 IVPVFYRLLAPIDDKIKR 1017



 Score = 38.5 bits (87), Expect = 4.5,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       ++ + +A+L+           L +  ++ +
Sbjct: 300 QAISPRYEIRPFLDTTSYIRTSIEDVKFDLILGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|149191586|ref|ZP_01869832.1| protein export protein SecF [Vibrio shilonii AK1]
 gi|148834604|gb|EDL51595.1| protein export protein SecF [Vibrio shilonii AK1]
          Length = 229

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 76/218 (34%), Positives = 122/218 (55%), Gaps = 1/218 (0%)

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            F ++     I FMR       +S++    +I  L T  LN+G+DF GG  + V   +P 
Sbjct: 1   MFQILKADKTIDFMRWSKAAFALSLVMIGAAIFTLSTKWLNWGLDFTGGTLIEVGFEQPA 60

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L  VRS L++   GD + QNF   ++ +VRL+ +  D  A+    +++           
Sbjct: 61  NLEQVRSALDAKGFGDATVQNFGSSRDVMVRLRPRE-DVQAEALGNQILDAIKQGTGESV 119

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            ++  E VGP +  EL   G + +++S I +LIY+ +RF+W  A GA+  L  D+  TLG
Sbjct: 120 EMRRIEFVGPNVGDELTEAGGLAILVSLICILIYVSVRFEWRLAAGAVLALAHDVIITLG 179

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            F+L  IE + T VAA+LT++GYS+ND +VV+D +R+N
Sbjct: 180 IFSLMQIEVDFTIVAALLTVVGYSLNDTIVVFDCIREN 217


>gi|332306690|ref|YP_004434541.1| acriflavin resistance protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174019|gb|AEE23273.1| acriflavin resistance protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1052

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 72/521 (13%), Positives = 168/521 (32%), Gaps = 40/521 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR    + +++  +   G+L +         L++FPS                  +  E 
Sbjct: 26  MRRPVTIGMVFFSMLLFGILAS-----QLLPLEKFPSIDIPEIT---------VQIPYEN 71

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    +E+ + +           +   +I L FA     +    +    + 
Sbjct: 72  ATPAEIEKMITRPVEEVLATMSGIKRLRSKSTENAAQIQLQFAWDENLKAKGIEAREKID 131

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L  D ++ L+      ++ I   + + ++ +S A +    + R     I      
Sbjct: 132 AIRNDLPDDVERILVYQFNTSDLPIFQLRVSSERDLSDAYDL---LERNLKMPIERVPGV 188

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      +  Q+    D  +   L      +       N +     F     + S   Q
Sbjct: 189 SKVELYGVLKKQIAIRIDTQKQASLGIPNDTLVNALRQANFAMTAGSFYDLEQKISINPQ 248

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  +IS + +       D            +     R + V  +   +  + ++  
Sbjct: 249 GAFTQIEDISNLIIQKGVRLSDIAHIGFESPERTEGRHLDRTYAVGFNIFRESNSNLVAV 308

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                 VINQA  S        F ++                           +   S +
Sbjct: 309 SQAVMEVINQANDSPAFAGITLFVMD-----------------------DEAASVTESLA 345

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  + A L ++VL+  +      L+   S+  ++ +TL  +  +G T+ + S+ G+
Sbjct: 346 DLLNAGLLGALLSILVLYAFLRNLTTTLIVVLSVPFSICITLGCMYFMGYTINILSMMGL 405

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L +G+ VD+ ++V E I++E +       +   G  +    +     T  I  +     
Sbjct: 406 MLAVGMLVDNAVVVTESIQQERKHYACPAQATKAGVGKVSLAVIAGTTTTAIVFLPNIVG 465

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
               +  F   + ++I IS+F ++ I + ++  +      K
Sbjct: 466 VKVNLTIFLEHVAIAICISLFASLLIAQTLIPLLTSRLSGK 506



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/262 (13%), Positives = 95/262 (36%), Gaps = 16/262 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +  +  + + L +V  +    ++ +I              +        A+ R+ ++++
Sbjct: 785  TITRIGQQTITLDMVSESKIVPRLAEIRRSYRQTSITIGANMGDDITLQQAKERIEDVMQ 844

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
                      T   +     +    +    ++ +      + I +   F+        IT
Sbjct: 845  YLTLPDGYSWTFDGSIDRQNQNESVMQTNMLLAIC----MIYIVMAALFESLLLPTAVIT 900

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            +L+  +T       + G   ++ ++  +L L+G  VN+ +V+ DR+    +L        
Sbjct: 901  SLLFSLTGVFWALFVTGTAMSVMSMIGMLILMGIVVNNGIVLVDRIN---QLIDQGHEIN 957

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI-------GSFAIPMAFGIVVAASS 811
              + ++    +   + T     + ++P+A  G + I          AI +  G+  +  +
Sbjct: 958  TAVIEACLTRVKPILMTVATTIVGLIPLA-LGNTSIGGDGPAYSPMAIAIIGGLAFSTVT 1016

Query: 812  SIFIAAPILLFIYDWRAKNARI 833
            S+ +     + +   RAK A++
Sbjct: 1017 SLVLVPLAYVLLLRLRAKAAQL 1038



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 87/281 (30%), Gaps = 3/281 (1%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R     ++          +  +        +    L +     +            +   
Sbjct: 225 RQANFAMTAGSFYDLEQKISINPQGAFTQIEDISNLIIQKGVRLSDIAHIGFESPERTEG 284

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                       + R       +V+Q  +  + +   +      T+   +     ++  L
Sbjct: 285 RHLDRTYAVGFNIFRESNSNLVAVSQAVMEVINQANDSPAFAGITLFVMDDEAASVTESL 344

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                 G++ + +++L+           L  + ++   I  TLG     G   N+ ++  
Sbjct: 345 ADLLNAGLLGALLSILVLYAFLRNLTTTLIVVLSVPFSICITLGCMYFMGYTINILSMMG 404

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++  +G  V++ VVV + +++  K Y             + +     +  +    I  LP
Sbjct: 405 LMLAVGMLVDNAVVVTESIQQERKHY---ACPAQATKAGVGKVSLAVIAGTTTTAIVFLP 461

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             V     +  F   +A  I ++  +S+ IA  ++  +   
Sbjct: 462 NIVGVKVNLTIFLEHVAIAICISLFASLLIAQTLIPLLTSR 502


>gi|260574354|ref|ZP_05842358.1| acriflavin resistance protein [Rhodobacter sp. SW2]
 gi|259023250|gb|EEW26542.1| acriflavin resistance protein [Rhodobacter sp. SW2]
          Length = 1093

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 71/577 (12%), Positives = 161/577 (27%), Gaps = 35/577 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                + RFP+                  +         +   +    ++  + +     
Sbjct: 29  FNALPITRFPNIDVPLV---------AVTVAQSGAAPAEMETQITKEIEDAVAGISGVKN 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            + ++    +   + F      +    +V   +  +   L  D +  ++     +  +I+
Sbjct: 80  IISTVSDGVSTTAVEFRMEVPTDKAVQEVKDAIDQIRGNLPGDIESPIVSRIDVEGQAIM 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                   +     E S  +    I  +       +         ++  E DP +L    
Sbjct: 140 TFAVAAPNMTIE--ELSWFVDDTIIRALQGRPGIGRVDRFGGAEREIRVELDPVKLNSFG 197

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T   ++      N         +     +            +S   ++  T        
Sbjct: 198 ITAQAVNAQLRATNTDLGAGRASLGVAEQAIRTLGDAATVARLSETTISLPTGQHVRLGD 257

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
              V  +                        L                 +A+ +   ++ 
Sbjct: 258 LGSVVDT---------------------YEELRSFSKFNSEQVVTFSVFRAKGASEVSVS 296

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                         P     + +  V    G+      T    A L ++V+   +   + 
Sbjct: 297 EQVNATLDTLRTKHPDVSMKLVDDTVFYTRGNYESALNTLIEGALLAVLVVLAFLKNWRA 356

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
             +A  ++ L+VI T  ++ LLG +L L S   + L  G+ VD  I+  E I    R  +
Sbjct: 357 TAIAAVALPLSVIPTFLVMDLLGFSLNLVSFLALTLATGILVDDAIVEIENIARHIRMGK 416

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTA 503
           + F +           +  ++ T +   V + F  G      R F +T+ +S+L S+  A
Sbjct: 417 TPFRAAIEAADEIGLAVIATSFTIVAVFVPVSFMPGIPGQYFRQFGLTVAISVLFSLLVA 476

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
             I   M  +I+R K  +  +             + +         +G   + ++    +
Sbjct: 477 RLITPLMAAYIMRAKDAQDDEHQDGRIMRAYQGFVRVSLRLRYLTLLGAIGVLAVSVFFM 536

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           L   G     +    I + V       L       ++
Sbjct: 537 LRIPGSFMPPEDVSRISVSVELPPGSTLEETDRTTQA 573



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 7/142 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W     A   L L +  T     L G   NL +  A+    G  V+D +V  + +    +
Sbjct: 354 WRATAIAAVALPLSVIPTFLVMDLLGFSLNLVSFLALTLATGILVDDAIVEIENI---AR 410

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                 +      ++ +E     + TS       +P++   G        F + +A  ++
Sbjct: 411 HIRMGKTPFRAAIEAADEIGLAVIATSFTIVAVFVPVSFMPGIPGQYFRQFGLTVAISVL 470

Query: 807 VAASSSIFIAAPILLFIYDWRA 828
            +   +  I  P++        
Sbjct: 471 FSLLVARLI-TPLMAAYIMRAK 491



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 60/156 (38%), Gaps = 7/156 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
            E    ++  EL+      +I+  + +L  + + F         + +L L I        L
Sbjct: 856  ESGDAEVQTELVTAFGNAMIMGLMLVLTVLILLFKSLIQPFTILFSLPLAIGGVATALIL 915

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   ++  +  +L L+G    + +++ D     ++           + ++ ++     V
Sbjct: 916  TGSAVSMPVLIGILMLMGIVTKNAILLID---YAIEARRQGFDRFAAVLEAGHKRARPIV 972

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
             TS+A    +LP A+    GGS     A  +  GI+
Sbjct: 973  MTSIAMSAGMLPSALGVGEGGSFRAPMATAVIGGII 1008


>gi|167629910|ref|YP_001680409.1| protein-export membrane protein secd [Heliobacterium modesticaldum
           Ice1]
 gi|167592650|gb|ABZ84398.1| protein-export membrane protein secd [Heliobacterium modesticaldum
           Ice1]
          Length = 425

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 131/370 (35%), Positives = 222/370 (60%), Gaps = 26/370 (7%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +   +    +V    ++Q   I+ QRI+ +G++E  IQ  G++R++I+L G QDP + 
Sbjct: 66  VVLQAVETPDRKVTQEEMQQVHAIMEQRINGLGVAEPLIQLEGTNRLIIELAGIQDPDKA 125

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
             L+G TA ++F                               +  I G  L  A    +
Sbjct: 126 VDLIGKTALLTFRTAD--------------------------GQTVIEGKDLKEAKEALE 159

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
           P ++  +V ++ +  GA++F +VTR N+GK + + LD  +L  P +++AI  G+A+I+G 
Sbjct: 160 PGSNMAIVHLTLNSEGAKKFADVTRANVGKQIGIYLDEDLLQNPTVSEAITGGQARITGY 219

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            ++E A  +A +L +G+LP+K+ +VE+R VG  LG++S+ K   A + G+ LI  FM + 
Sbjct: 220 GSLEDARRIAMLLNSGALPVKMEMVEKRTVGPTLGAESLEKSKAAAMIGVGLIFAFMFLY 279

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G VA  S+ L  ++ + +L+LL AT TLP IAG +L +G+AVD+N+++ ER++EE 
Sbjct: 280 YRVPGFVAIVSLILYSVIVVGILTLLKATWTLPGIAGFLLSLGVAVDANVIIYERLKEEL 339

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R  +++  +++ GF RA++TI DSN+T LI+ V+L++ G G +RGFA+T+G+ IL SMFT
Sbjct: 340 RAGKTLRTAIEDGFQRAFTTILDSNVTTLISIVILYYLGTGPIRGFAVTLGIGILTSMFT 399

Query: 503 AISIVRAMMI 512
           A+S  R M+ 
Sbjct: 400 ALSFTRMMLR 409



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 84/224 (37%), Gaps = 4/224 (1%)

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
           QN    +          G    +      +      +     +     VGP +  E + K
Sbjct: 201 QNPTVSEAITGGQARITGYGSLEDARRIAMLLNSGALPVKMEMVEKRTVGPTLGAESLEK 260

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
                +I    +  ++++ ++      AI +LIL     +G   L    + L  +A  L 
Sbjct: 261 SKAAAMIGVGLIFAFMFLYYRVP-GFVAIVSLILYSVIVVGILTLLKATWTLPGIAGFLL 319

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G +V+  V++Y+R+++ ++      + R  I+          + +++   IS++ +  
Sbjct: 320 SLGVAVDANVIIYERLKEELRA---GKTLRTAIEDGFQRAFTTILDSNVTTLISIVILYY 376

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G   I  FA+ +  GI+ +  +++     +L         N +
Sbjct: 377 LGTGPIRGFAVTLGIGILTSMFTALSFTRMMLRSAGGSGLFNNK 420



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 18/116 (15%), Positives = 41/116 (35%), Gaps = 13/116 (11%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-VDEDD--FVNGF 69
           ++  I ++          ++             LGLDL+GG H+VL+ V+  D       
Sbjct: 32  LVALISVVAIAAALSYNPIVQNT---------KLGLDLQGGLHVVLQAVETPDRKVTQEE 82

Query: 70  LQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
           +Q     +   +   G+    ++ +  N++ +  A  +  +   D +         
Sbjct: 83  MQQVHAIMEQRINGLGVAEPLIQLEGTNRLIIELAGIQDPDKAVDLIGKTALLTFR 138


>gi|87302774|ref|ZP_01085585.1| preprotein translocase subunit [Synechococcus sp. WH 5701]
 gi|87282657|gb|EAQ74615.1| preprotein translocase subunit [Synechococcus sp. WH 5701]
          Length = 333

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 76/314 (24%), Positives = 141/314 (44%), Gaps = 29/314 (9%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLN--------YGIDFKGGIQLGVLANRPVD 590
             +  R R      S +  + S+  +    LN         G+DF GG ++ +      +
Sbjct: 6   YFRITRHRHIAWWGSAVACLISLIGIALCWLNPAIGAPLKPGLDFTGGTRIQLERACDPN 65

Query: 591 LSVVRSNLESLQIGDISFQNFDG--------------EKNFLVRLQYQPGDSVAQTRVLE 636
            S +     + Q+  +   +  G              ++   + L+     +     V+ 
Sbjct: 66  CSAITVPQVAEQLDGLKLPDEGGAAAPGLRGAPVQVLDQGRSIELRLPSLSAEQGNAVIS 125

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +   +          + + +GP +  +L+R  ++ +++S  A+ +YI +R+   FA  A
Sbjct: 126 QLAGSLGPFKDG--GTSVDTIGPTLGAQLLRSSLLSLLVSFAAIALYITLRYDRVFAFLA 183

Query: 697 ITTLILDITKTLGFFAL----FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           I  L  D+  T G FA      GIE +     A++T+ GYSVND VVV+DR+R+  K   
Sbjct: 184 ILCLAHDVLITTGLFAWLGLLLGIEVDSLFAVALITVAGYSVNDTVVVFDRIREQ-KTSL 242

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
            +  F D +D +++ TL RS+YTS+   + +L +  +GGS +  F++ +  GI V + SS
Sbjct: 243 GAFPFSDQVDVAVDATLTRSLYTSLTTLLPLLGILFFGGSSLFWFSVALTAGISVGSWSS 302

Query: 813 IFIAAPILLFIYDW 826
           I +A  +L  +   
Sbjct: 303 IGVAPTLLPLLSGK 316


>gi|260461468|ref|ZP_05809715.1| acriflavin resistance protein [Mesorhizobium opportunistum WSM2075]
 gi|259032538|gb|EEW33802.1| acriflavin resistance protein [Mesorhizobium opportunistum WSM2075]
          Length = 1058

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 57/541 (10%), Positives = 142/541 (26%), Gaps = 41/541 (7%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
            I   +   I   +A       +  +  P       +           L+ +    +   
Sbjct: 14  TISVLVFLLIAGWVA----YQSTPKEAEPDV--PIPMMY-------VSLIYQGISPEDSE 60

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             L    +     LK       +  Q    + + F                +Q   + L 
Sbjct: 61  RLLLRPMESKLKSLKGLKEMRSAAFQGGGYVLVEFQPQTNLATALQDTRSKVQDGKADLP 120

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              ++ ++      E  +++   + D              R+  D+I      ++     
Sbjct: 121 QAAEEPVVTEVNISEFPVLVVTLSGDLPERVLTA----AARELRDRIEEVPGVLEGSLQG 176

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                +    DP +L        ++       N+            + +     L+E   
Sbjct: 177 SRDDLVEVVIDPMKLSSYGLQLDQLIGAVSASNSLVAAGNIEGSEGKYAVKVPSLIETPE 236

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           +++                     +                 I    A       L    
Sbjct: 237 DVAA--------------------LPVVAGPNAVVQAKDIATIRSTFADAETITRLNGKP 276

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                   +   +   T+     ++                +             +    
Sbjct: 277 AIAIEVKKRIGANLIDTLTKVREVSDGFVKTMPEGMHVTYTQDKSVFVNQLLGDLQNHVM 336

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           I   LV IV+   +      L+   +I  + ++ + LL+++G T+ +  +  ++L +G+ 
Sbjct: 337 IAVILVFIVILYALSGR-ASLLIGLAIPSSFLIGILLLAMMGYTINMIVLFSLILAVGML 395

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGA 484
           VD  I+V E       +      +  +   R    +  + +T + A   L F+    G  
Sbjct: 396 VDDAIIVTEFAERRMSEGMPKQDAFALAAKRMAGPVIAATMTRIAAFSPLLFWPGIIGDF 455

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           ++   IT+ +++  SM  A+     +     +  +    D        ++   +      
Sbjct: 456 MKYMPITLIVTLSASMLYALVFAPTLGAIFAKAPQHHEDDNRDGWYMAVVKQAVRFPITV 515

Query: 545 A 545
            
Sbjct: 516 M 516



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 81/242 (33%), Gaps = 7/242 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKK 640
            V     V  +   + + S      +    +G+    + ++ + G ++  T   +  V  
Sbjct: 243 VVAGPNAVVQAKDIATIRSTFADAETITRLNGKPAIAIEVKKRIGANLIDTLTKVREVSD 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
              + +P                +L+      V+I+ I + I I        +L     +
Sbjct: 303 GFVKTMPEGMHVTYTQDKSVFVNQLLGDLQNHVMIAVILVFIVILYALSGRASLLIGLAI 362

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                  +   A+ G   N+  + +++  +G  V+D ++V +   +  +  +  +  +D 
Sbjct: 363 PSSFLIGILLLAMMGYTINMIVLFSLILAVGMLVDDAIIVTE-FAE--RRMSEGMPKQDA 419

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              +     G  +  +M    +  P+  W    G  +    I +   +  +   ++  A 
Sbjct: 420 FALAAKRMAGPVIAATMTRIAAFSPLLFWPGIIGDFMKYMPITLIVTLSASMLYALVFAP 479

Query: 818 PI 819
            +
Sbjct: 480 TL 481



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 88/243 (36%), Gaps = 36/243 (14%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +    V +Q           V + V K + ++   S I+       + S E         
Sbjct: 788  DGARTVVVQANVAAGQQVAAVQQEVTKAVADMDLGSGIRWKLAGSNEDSAEASAFLSKAF 847

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA-------LFGIEFNLTAVAAV 726
              +   + + +  +F  + ++  + + +  +  T+G F         FGI  +   V A+
Sbjct: 848  GAAIFLIFLVLLAQFNKFTSVWLVLSCV--VMATIGVFLGLLITGETFGIVMSGIGVIAL 905

Query: 727  LTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
                G  VN+ +V+   YDR+R+            + + ++  E     V T+++A + V
Sbjct: 906  A---GVVVNNNIVLIDTYDRLREE------GWDKMEAVLQTCRERARPVVLTAVSAILGV 956

Query: 784  LPMAV-WGGSVIG--------------SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            LP+A   G  +                S +  + FG+  A   ++ +   +L+     + 
Sbjct: 957  LPIAFGLGLEIFHHETTINAPSTQWWISLSSAIVFGLSFATVLTLVVTPSMLMVFTRAKV 1016

Query: 829  KNA 831
            K  
Sbjct: 1017 KPG 1019



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 51/561 (9%), Positives = 142/561 (25%), Gaps = 71/561 (12%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R      ++   +  +  +    +    + ++ FPS  P   + L +  RG   L     
Sbjct: 510  RFPI--TVMVLTVVLLAGIFVGYSKYG-AGVEFFPSVEPDYGL-LYVHARGNLSL----- 560

Query: 62   EDDFVNGFLQMYSDELRSFL---KKEGIGVFSM--RQIQNK---------ITLSFADSRF 107
                    +   +    + +            +   Q   +         I   F D R 
Sbjct: 561  ------AEMDTATKIAENRMLGWPGIKSVYTRVGKTQGGGQDVPEDVVGVIQYEFIDWRE 614

Query: 108  KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
            +++    +   L+GV + +     +  +          +  + +         +++  + 
Sbjct: 615  RKSANQILND-LRGVMAGIPGVDVEVRVPEAGPPTGKPIQIRLSAVDPK-GLDDKARAVA 672

Query: 168  RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF--HKVLPNNSKKG 225
             +     G+ + +               E D ++  Q   +   +      V        
Sbjct: 673  ARVAKVPGVIDISDGLPPPGV---DWALEVDRAKAAQYGISPTAVGTVVQLVTNGLKLSE 729

Query: 226  FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
            +             +   + +   +   L   T+         V+      +G     + 
Sbjct: 730  YRPAGADDAVDIRLRLPEDRRTLSTLDELRVQTSQGSVPISNFVIRKPEPTVGILNRIDG 789

Query: 286  TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
             R  + +                           +G         +   +    L   + 
Sbjct: 790  ARTVVVQ-----------------------ANVAAGQQVAAVQQEVTKAVADMDLGSGIR 826

Query: 346  IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
                 +      + +           L+ +VL           +    + +  I     L
Sbjct: 827  WKLAGSNEDSAEASAFLSKAFGAAIFLIFLVLLAQFNKFTSVWLVLSCVVMATIGVFLGL 886

Query: 406  SLLGATLTL-PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL-DMGFSRAYSTI 463
             + G T  +  S  G++   G+ V++NI++ +       +      ++      RA   +
Sbjct: 887  LITGETFGIVMSGIGVIALAGVVVNNNIVLIDTYDRLREEGWDKMEAVLQTCRERARPVV 946

Query: 464  FDSNITALIATVVLFFFGGGAVR----------GFAITMGLSILISMFTAISIVRAMMIF 513
              +    L    + F  G                + I++  +I+  +  A  +   +   
Sbjct: 947  LTAVSAILGVLPIAFGLGLEIFHHETTINAPSTQWWISLSSAIVFGLSFATVLTLVVTPS 1006

Query: 514  IIRYKKMKSIDINPLSRFFLI 534
            ++       +        F  
Sbjct: 1007 MLMVFTRAKVKPGARRSLFSR 1027


>gi|218249287|ref|YP_002374668.1| acriflavine resistance protein [Borrelia burgdorferi ZS7]
 gi|218164475|gb|ACK74536.1| acriflavine resistance protein [Borrelia burgdorferi ZS7]
          Length = 1071

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 165/514 (32%), Gaps = 33/514 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K          +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSVSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKIPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVINEIEKLKLSMPKDMKLEIASDSTDFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+     +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFFLMYFANISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G   + F  T+ +S+ +S+  AI +V  +
Sbjct: 462 ELGVYGDFFKDFTFTIVISLGVSLLVAIFLVPVL 495



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
               +  +F+ +      I T+ L     +    L G + ++ A   +L L+G  VN  +V
Sbjct: 885  FGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFLAGEKLSIFAAIGMLMLVGVVVNTGIV 944

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + D       L       R+ I +S    L   + +S+ + I ++PMA     G  ++  
Sbjct: 945  LVD---YTGLLIKRGFGLREAIIESCRSRLRPILMSSLTSIIGLIPMAFSSGSGNELLKP 1001

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             A     G+  +   ++F    +     +
Sbjct: 1002 IAFTFIGGMTASTFLTLFFIPMLFEIFSN 1030



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V+  ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVINEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMKLEIASDSTDFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFFLMYFANISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F   +   + V+   +I
Sbjct: 430 SSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFTFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511


>gi|226321949|ref|ZP_03797474.1| acriflavine resistance protein [Borrelia burgdorferi Bol26]
 gi|226232539|gb|EEH31293.1| acriflavine resistance protein [Borrelia burgdorferi Bol26]
          Length = 1071

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 165/514 (32%), Gaps = 33/514 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K          +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSVSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKIPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVINEIEKLKLSMPKDMKLEIASDSTDFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+     +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFFLMYFANISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G   + F  T+ +S+ +S+  AI +V  +
Sbjct: 462 ELGVYGDFFKDFTFTIVISLGVSLLVAIFLVPVL 495



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
               +  +F+ +      I T+ L     +    L G + ++ A   +L L+G  VN  +V
Sbjct: 885  FGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFLAGEKLSIFAAIGMLMLVGVVVNTGIV 944

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + D       L       R+ I +S    L   + +S+ + I ++PMA     G  ++  
Sbjct: 945  LVD---YTGLLIKRGFGLREAIIESCRSRLRPILMSSLTSIIGLIPMAFSSGSGNELLKP 1001

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             A     G+  +   ++F    +     +
Sbjct: 1002 IAFTFIGGMTASTFLTLFFIPMLFEIFSN 1030



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V+  ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVINEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMKLEIASDSTDFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFFLMYFANISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F   +   + V+   +I
Sbjct: 430 SSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFTFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511


>gi|13474810|ref|NP_106380.1| RND efflux transporter [Mesorhizobium loti MAFF303099]
 gi|14025566|dbj|BAB52166.1| RND efflux transporter [Mesorhizobium loti MAFF303099]
          Length = 1038

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 76/584 (13%), Positives = 164/584 (28%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   I  +G++  +   +       FP+                    L   
Sbjct: 9   QRPIATGLLTLGIVLVGMVAYMLLPISSLPQVDFPTIA--------------VESTLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + +   +    ++  S +        +    +  +TL F  SR  ++ A  V   +  
Sbjct: 55  KAETMASTVASPLEQQFSTIPGLAQMTSTSTLGKTDMTLQFDLSRNIDSAAQDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  L    +           +  V+S       I   +             +       
Sbjct: 115 ASGSLPKAMQSPPTYHKVNPALFTVISIVLQSDTIPLPL-VMDAASNMVAQTLSQIPGAG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +  + DP +L  L  +   +    V+   +                   
Sbjct: 174 FVDMPGSSKSAIRIQLDPMKLASLGMSLEDVRSALVVGTTNGPKGTLE------------ 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN    T                            +     G 
Sbjct: 222 --------GAQRSVTLDANNQLLTSADASAAIIAYRNGSPIRISDIGRAIDSVENTTLGA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++  +    +         LR    P    +    +  A   + + 
Sbjct: 274 WYNNRKAVLIDVHLQSGANAVDVVNGVKAALPGLRLRLPPSVQIMTAGDSTVAVRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I  GLV++ +F+ +      ++   +I +++I T  ++ LLG +L   S+ G+ 
Sbjct: 334 VQFTLMITIGLVVLTIFLFLKSMSATIIPAVTIPVSLIGTFGVMYLLGYSLDNISLMGLT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E I       +S   +   G S    T+     + +   + L    
Sbjct: 394 IAVGFVVDDAIVVIENIVRHIEGGESPLEATLKGASEIGFTVVSMTASLIAVFIPLLLMS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
                  R F++T+ ++++IS   ++++   M   +I+    ++      S      D I
Sbjct: 454 SMVGRLFREFSVTIAVALIISALVSLTLTPMMCALMIKGHGHEAKPNRLSSLLERGFDFI 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              + R+    VG   L  +C    L      +    KG     
Sbjct: 514 QRGYSRSLRVVVGHPRLVLLCFFATLAVTAELFLAIPKGFFPQQ 557



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 72/169 (42%), Gaps = 10/169 (5%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I  + + I+++++      +    T+ + +  T G   L G   +  ++  +   +
Sbjct: 338 LMITIGLVVLTIFLFLK-SMSATIIPAVTIPVSLIGTFGVMYLLGYSLDNISLMGLTIAV 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +   ++      S  +   K  +E     V  + +     +P+ +  
Sbjct: 397 GFVVDDAIVVIENI---VRHIEGGESPLEATLKGASEIGFTVVSMTASLIAVFIPLLLMS 453

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA---PILLFIYDWRAKNARI 833
              G +   F++ +A  ++++A  S+ +      +++  +   AK  R+
Sbjct: 454 SMVGRLFREFSVTIAVALIISALVSLTLTPMMCALMIKGHGHEAKPNRL 502



 Score = 44.3 bits (102), Expect = 0.084,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 65/158 (41%), Gaps = 6/158 (3%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ + IA+ I + + ++     +  ++TL       L    L G + ++  +  ++ LIG
Sbjct: 859  IVAALIAVYIVLGMLYESVIHPITILSTLPSAGVGALATLMLVGGQLDVMGLVGIILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ D            +  ++ I ++          T++ A +  LP+A+   
Sbjct: 919  IVKKNAIMMID--FALSAERDRGLPPKEAIIQACILRFRPITMTTLCALLGALPLALGTG 976

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             G  +     I +  G+ V+   +++    I L++  +
Sbjct: 977  VGSELRRPLGIAIVGGLCVSQLLTLYTTPVIYLYMQQF 1014


>gi|331008536|gb|EGH88592.1| multidrug RND efflux transporter, permease MdtC [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 735

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/564 (11%), Positives = 158/564 (28%), Gaps = 39/564 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FRLLPVAPLPNMDFPVIV---------VSASLAGASPEVMASTVATPLERSLGSIAGVNT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  Q   +I L F  +R     A +V   +    + L    +            + +
Sbjct: 80  MTSNSSQGTTRIILQFDLNRDINGAAREVQAAINASRNLLPSGMRSMPTYKKVNPSQAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   ++   +    +            +       +       L  +  E +P  L Q  
Sbjct: 140 MV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGEVQIGGSSLPAVRIELEPQMLSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N  +                   +E   +                  
Sbjct: 199 VSLDDVRTAITGANVRRPKGFVEDDQHNWQVQANDQLETAKD------------------ 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                 +   +    +            + + +A  +   T+ 
Sbjct: 241 --YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIETVA 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA         V          +    + T  I   LV++V+F+ +   + 
Sbjct: 299 QIKAQLPALRAVLPASVSLNVAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ ++++ T A++ LLG +L   S+  ++L  GL VD  I+V E I        
Sbjct: 359 SLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENISRHIHNGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTA 503
               +  +G      T+   N++ +   + + F GG      R F+IT+ +SI++S+  +
Sbjct: 419 DPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSIVVSLIVS 478

Query: 504 ISIVRAMMIFIIRY------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +++   +    ++          +        R     D      MR R   +   ++  
Sbjct: 479 LTLTPMLCARWLKPHDSGKDNAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLLSLLITV 538

Query: 558 ICSICLLFTHGLNYGIDFKGGIQL 581
           + ++ L       +      G  +
Sbjct: 539 VVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     L G   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491


>gi|318060641|ref|ZP_07979364.1| integral membrane efflux protein [Streptomyces sp. SA3_actG]
 gi|318078229|ref|ZP_07985561.1| integral membrane efflux protein [Streptomyces sp. SA3_actF]
          Length = 1046

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 63/516 (12%), Positives = 154/516 (29%), Gaps = 28/516 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  ++  + ++      +PQ      P+                  +  +  
Sbjct: 6   RFSLAQRALIGLMSIVAIVFGA-IAIPQLKQQLLPNIELPMV---------SVIVPYQGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    ++    +        +  +    +   F      + +   V   +  
Sbjct: 56  SPDVVEKQVVEPLEKSLDAVDGLSTTTSTASEGNAVVMAQFDFGSGTKQLVADVQQAVNR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  D    ++  +T+   ++VL+  +           S ++ R  + ++   +   
Sbjct: 116 ARSQLPDDVDPQVVAGSTDDIPTVVLAATS----PRDQQALSDQLDRTVVPELKEIDGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q        +Q+    D ++L +   + A +         +     F             
Sbjct: 172 QVTIDGVRDLQVTITPDTAKLARAGLSAAALGDALKTGGVTMPAGSFDEG---------- 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E++    G          D +               +        ++ +  A      
Sbjct: 222 -GENRTVQVGTPFTSLRQIEDLRVVGQAGQGGAQGETPKPVRLGDVASVQQQEATATSIT 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     S              LR          V          + S 
Sbjct: 281 RTDGKPSLAVAVTMDKDGSAVGISNAVKDKLGDLRDSLGKGADLKVVVDQGPPVSKAISG 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A+  G  ++V+ + +   +  LV   SI L+V+LTL +L     +L + ++  + 
Sbjct: 341 LTTEGALGLGFAVVVILVFLASIRSTLVTAVSIPLSVLLTLIVLWTRDLSLNMLTLGALT 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD +I+V E I+      +    ++          +  S +T +   + +   G
Sbjct: 401 IAIGRVVDDSIVVLENIKRHLGYGEERREAILTAVKEVAGAVTASTLTTVAVFLPIGLVG 460

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G     F++T+  ++L S+  ++++V  +  + 
Sbjct: 461 GIVGELFSSFSLTVTTALLASLLVSLTVVPVLSYWF 496



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 71/177 (40%), Gaps = 9/177 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    L  ++  + +   L  + +      K    L  +G +G+  + + +L+++   
Sbjct: 304 SNAVKDKLGDLRDSLGKGADLKVVVDQGPPVSKAISGLTTEGALGLGFAVVVILVFLA-- 361

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    ++ L +  TL       +  N+  + A+   IG  V+D +VV + ++  
Sbjct: 362 -SIRSTLVTAVSIPLSVLLTLIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK-- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
            +        R+ I  ++ E  G    +++      LP+ + G   G +  SF++ +
Sbjct: 419 -RHLGYGEERREAILTAVKEVAGAVTASTLTTVAVFLPIGLVGGIVGELFSSFSLTV 474



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 69/191 (36%), Gaps = 3/191 (1%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L ++++ D        +      +  +P      +   E+ KK     +P         
Sbjct: 788 DLATVRLVDGPVSMTRIDGARAATVTAKPVGDDTGSISTELTKKLDELKLPQGATTEIGG 847

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           V    +  L +  +  +   AI  L+ +         L  + ++    T  LG   + G 
Sbjct: 848 VTADQNDSLGKLALAMLAAVAIVFLLLVGTFRSLIQPLILLVSIPFAATGALGLLLVTGT 907

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              + A+  +L LIG  V + +V+ D + +            + + +     L   + T+
Sbjct: 908 PLGVPAMIGMLMLIGIVVTNAIVLIDLINQYR---DRGYGVIEAVTEGGRHRLRPILMTA 964

Query: 777 MAAFISVLPMA 787
           +A   +++PMA
Sbjct: 965 LATIFALIPMA 975


>gi|51598403|ref|YP_072591.1| acriflavine resistance protein [Borrelia garinii PBi]
 gi|51572974|gb|AAU06999.1| acriflavine resistance protein [Borrelia garinii PBi]
          Length = 1070

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 93/641 (14%), Positives = 199/641 (31%), Gaps = 34/641 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H       
Sbjct: 9   KPITMLILFSLVMMISLYT-----FSRLKIDLLPGIDIP---------QISIHTAYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K       +  +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSTSSKESSTVSLEFYHGTDWDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + E+I      +   +    
Sbjct: 115 KSLLPSKSQAPRIFRYNLKNIPVMEITINSVRPVSELKRYADEVI---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NIIENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  V++SG   +          +K     S     A         NI      + +   
Sbjct: 222 LEYLVQVSGKFKSIEEIGNVVIAYKIPAISSGINSSAIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVVREIEKLKLSMPKDMKLEIASDSTNFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + +ILT  L+  L  ++ + S+AG+ L
Sbjct: 342 VNSAYFGAILAIFVIFFFLRSFRATIIIGISIPIAIILTFCLMYFLNISINIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + F+ T+ +S+ +S+  AI +V  +    +        +I       +   
Sbjct: 462 ELGVYGDFFKDFSFTIVISLGVSLLVAIFLVPVLSSHYVGLYTSFQKNIKNAFIRKIDTF 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              I +     +   ++I+ +   I  L       G  F G   L V        + +  
Sbjct: 522 FARIYYFLEFLYINLLNIVLNHKLIFGLIVFFSFIGSLFLGL-LLDVTTFARGKENSIVI 580

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           NL      ++ +  F   K   +      G     + +   
Sbjct: 581 NLNFPNKTNLEYAKFYSNKFLEIVKSEAKGYKSIISTLNAD 621



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 86/235 (36%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ + +  + +   +   +   + L      +   T+V   V   I   VP       +
Sbjct: 798  SSIATFEKTNKAESIYRENQALTIYLNASISPNDNLTQVTAKVIDFINNKVPHKEGTVLK 857

Query: 656  IVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            + G       I      +I ++ I +   +  +F+ +      I T+ L     +    L
Sbjct: 858  VEGEYDEFSNIMNQFKIIITMAVIVVFGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFL 917

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++ A   +L L+G  VN  +V+ D       L       R+ I +S    L   +
Sbjct: 918  AGEKLSIFAAIGMLMLVGVVVNTGIVLID---YTGLLIKRGFGLRESIIESCRSRLRPIL 974

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +S+ + I ++PMA     G  ++   A     G+  +   ++F    +     +
Sbjct: 975  MSSLTSIIGLIPMAFSSGSGNELLKPIAFTFIGGMTASTFLTLFFIPMLFEVFSN 1029



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/261 (10%), Positives = 76/261 (29%), Gaps = 17/261 (6%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +      ++     +L      +             V+ +           V+  ++K
Sbjct: 259 IEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVVREIEK 313

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               +     ++        I   +          + +A+ +  +    +   +    ++
Sbjct: 314 LKLSMPKDMKLEIASDSTNFIKASISTVVNSAYFGAILAIFVIFFFLRSFRATIIIGISI 373

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + I  T        I  N+ ++A +   IG  V+  +VV D +    K           
Sbjct: 374 PIAIILTFCLMYFLNISINIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLISS 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSIF 814
                 E +     ++  +     P  ++       G     F+  +   + V+   +IF
Sbjct: 431 SILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFSFTIVISLGVSLLVAIF 490

Query: 815 IAAPI---LLFIYDWRAKNAR 832
           +   +    + +Y    KN +
Sbjct: 491 LVPVLSSHYVGLYTSFQKNIK 511


>gi|260460579|ref|ZP_05808830.1| acriflavin resistance protein [Mesorhizobium opportunistum WSM2075]
 gi|259033684|gb|EEW34944.1| acriflavin resistance protein [Mesorhizobium opportunistum WSM2075]
          Length = 1043

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 65/516 (12%), Positives = 145/516 (28%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L ++I   GL            +   P                      E  
Sbjct: 19  RRPVMAFVLNTLIAVAGLAA-----FYGVEIRELPDVDRAVVT---------VSTTFEGA 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  L    +   + +        S     +++T+ F D       A  V   +  
Sbjct: 65  AAETVDRELTDTIEGAVARVSGVKSISSSSSFGSSRVTIEFNDGVDLNVAASDVRDAVGR 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V +++        +V       +++      D       + ++ +  Q  D++       
Sbjct: 125 VANQMPDTADPPRIVKADANSDAVMRLAVTSDN--MSIQDMTVVVQDQIEDELAAVPGVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D ++L  L  T A +                             
Sbjct: 183 DVQVYGDRDKIFRIDVDQNKLASLGFTVADLRTALASVAFDSPAGSITTTNQDLIVRTTA 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E   I +                                   +     +     
Sbjct: 243 DVTTPEEFENIII------------------------GGTTRIRDVATVTLGPDIGQTTL 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A+ +            A L+          +   +     G+   
Sbjct: 279 RSDGKTGIGIGIIRQAESNTLDISTGVQAAVAKLQQNLPKGMAIKITSDDAVFVKGAVHE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   +VLIV+++ +L  +  L+   S+ + +I T+A + L G ++ + ++  +V
Sbjct: 339 VEIALGLSVTMVLIVIYVFLLDWRATLIPGLSMPVAMIGTIAAIYLAGFSVNILTLLALV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  + +T +   V + F  
Sbjct: 399 LATGLVVDDAIVVLENIVRRRNEGMGPRAAAVLGAQEVFFAVVATTLTLVAVFVPISFLP 458

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F   + +S+L+S   A+++   +   +
Sbjct: 459 GQTGGLFREFGFVLAMSVLLSCVVALTLCPMLASRM 494



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 82/231 (35%), Gaps = 7/231 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V +      IG  + ++       +  ++    +++  +  ++    K+ + +P     
Sbjct: 263 DVATVTLGPDIGQTTLRSDGKTGIGIGIIRQAESNTLDISTGVQAAVAKLQQNLPKGMAI 322

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFF 711
                     +  + +  + + +S   +LI I      W   L    ++ + +  T+   
Sbjct: 323 KITSDDAVFVKGAVHEVEIALGLSVTMVLIVIYVFLLDWRATLIPGLSMPVAMIGTIAAI 382

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   N+  + A++   G  V+D +VV + +   ++     +  R        E    
Sbjct: 383 YLAGFSVNILTLLALVLATGLVVDDAIVVLENI---VRRRNEGMGPRAAAVLGAQEVFFA 439

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            V T++      +P++   G        F   +A  ++++   ++ +   +
Sbjct: 440 VVATTLTLVAVFVPISFLPGQTGGLFREFGFVLAMSVLLSCVVALTLCPML 490



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 88/243 (36%), Gaps = 12/243 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V +S + +  E      +S +           L        A TR  E+    +     
Sbjct: 782  FVPMSTIATLTERAVPPSLSREQQQPSVAITSNLSGNFALGDALTRAEEIATPLLPPGSR 841

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
            +  +     +G   S  +   G      + + +L+ +  +F+ +  A+  + T+ L +  
Sbjct: 842  ILPLAEAATLGETNSAMITIFGF-----ALVIILLVLAAQFESFVSAVIIMATVPLGLAC 896

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             +    L G   N  +   ++ L+G    + +++ +      +L    +  R+ I+++  
Sbjct: 897  AIIALLLSGTSLNAYSQIGLVLLVGVMAKNGILIVEFAN---QLRDRGLGVREAIEQAST 953

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + T +   +  +P+ +    G     +    +  G+ +A  S++F+     L +
Sbjct: 954  IRLRPVMMTMICTILGGVPLVLAAGAGAEARVALGWVIVGGLGLATVSTLFLTPVAYLLL 1013

Query: 824  YDW 826
              +
Sbjct: 1014 GRF 1016


>gi|297559506|ref|YP_003678480.1| acriflavin resistance protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843954|gb|ADH65974.1| acriflavin resistance protein [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 1067

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 58/519 (11%), Positives = 149/519 (28%), Gaps = 23/519 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   ++++   +   G+L A       +  + FP       +  G           +   
Sbjct: 11  NRALVLLITLAVLFFGVLAAA-----SAKRELFPDMSLPMVMVSG---------TYQGAA 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    +        +     +++T+ F   + ++++  +  + +  V
Sbjct: 57  PQVVESQVTEPLEQAVQSVPGVTTVTSTSSTGSSQVTVEFDYGQDQDDLVRQTQIAVDQV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L      +++  +T+    ++L+    D      ++         I ++   E    
Sbjct: 117 AGMLPEGVDTSVMSFSTDMMPVVMLAAGAGDGDDQAMVDPLET---HLIPELESVEGVRS 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +  +   +    D   L     +   +          + G          S      
Sbjct: 174 ATITGAVESDVVVTPDEDELAANGLSPQSLVDALQSSGLLQPGGDVESDGRSLSVTTGDQ 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                ++                       +     A         ++            
Sbjct: 234 FTSIEQV---EEVWLQPAAAGADMSAAAPGAPPAAPADPVRLSEVADVELVQDEAASLAR 290

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        +       +     E    +               V          S    
Sbjct: 291 VNGDPSIGVMVMKTPDGNTVEVSEGVQAVLDEQADVLGEDIDISVVFDQAPYINESIIAM 350

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +     +IV+ + +   +  LV   SI ++V++    +     +L + ++A I +
Sbjct: 351 LEEGGMGLLAAVIVILVFLFSIRSTLVIAVSIPVSVLIGFLGMQAFDFSLNMLTLAAITI 410

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG  VD +I+V E IR      +    ++  G     + +  S +  +   + L F GG
Sbjct: 411 SIGRVVDDSIVVLENIRRHLDYGKERMAAVKQGVREVAAAVVSSTLATIAVFLPLAFVGG 470

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
                   FA+T  L++  S+  +I+++  +  + +R K
Sbjct: 471 QVGELFLPFAVTASLALAASLIVSITLIPVLCYWFMRPK 509



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 80/238 (33%), Gaps = 6/238 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V    L   +   ++  N D     +V              V  ++ ++   +     
Sbjct: 273 SEVADVELVQDEAASLARVNGDPSIGVMVMKTPDGNTVEVSEGVQAVLDEQADVLGEDID 332

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I       P I+  +I     G +    A+++ +   F     L    ++ + +      
Sbjct: 333 ISVVFDQAPYINESIIAMLEEGGMGLLAAVIVILVFLFSIRSTLVIAVSIPVSVLIGFLG 392

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              F    N+  +AA+   IG  V+D +VV + +R   +           + + + E   
Sbjct: 393 MQAFDFSLNMLTLAAITISIGRVVDDSIVVLENIR---RHLDYGKERMAAVKQGVREVAA 449

Query: 771 RSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             V +++A     LP+A  GG V      FA+  +  +  +   SI +   +  +   
Sbjct: 450 AVVSSTLATIAVFLPLAFVGGQVGELFLPFAVTASLALAASLIVSITLIPVLCYWFMR 507



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 82/217 (37%), Gaps = 9/217 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                               V   + + +  +        T     +   E   + ++ ++
Sbjct: 821  DGITSATVSASATGSDLGAVSAEITQALDTMDLPEGATATLGGVSQDQSEGFAQLMLAMV 880

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             + +   + +   F      L  + ++   IT +LG   + G    +  +  +L LIG  
Sbjct: 881  AAIVICYLIMVATFKSLLQPLMLLISVPFAITGSLGLLLVTGTPLGVAGMVGMLMLIGVV 940

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
            + + +V+ D + +N       +  R+ I +     L   + T++A   ++ PMA+    G
Sbjct: 941  ITNAIVLMDLINQN---QNNGMPLREAIVEGARHRLRPILMTALATVAALTPMALGITGG 997

Query: 791  GSVIG-SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G+ I    AI +  G++ +   ++ I  P+L  + +W
Sbjct: 998  GAFISAPLAIVVIGGLLSSTVLTL-ILVPVLYQLVEW 1033


>gi|221210149|ref|ZP_03583130.1| acriflavin resistance protein [Burkholderia multivorans CGD1]
 gi|221170837|gb|EEE03303.1| acriflavin resistance protein [Burkholderia multivorans CGD1]
          Length = 1055

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 71/636 (11%), Positives = 167/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  PS                  ++   
Sbjct: 8   LRRPYTFIVMAIMIVL-----ATPLALMRTPVDVLPSINIPV-----------VSVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
             + F    +      +        +        +       + +        +    + 
Sbjct: 50  SYNGFSAKEMSDRITSVHERSLTTTVNNIQHIESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +       +     Q+ 
Sbjct: 110 VASAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LGDIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  LR    T A +       N +       +     
Sbjct: 168 TIPGAQIPFPYGGRTRVVAIDIDPQALRAKGLTPADVVNAVNAQNLTLPTGTAKMGPTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +I+                     +    +     +     ++    +
Sbjct: 228 RIDTNASADTIADIT--------------------HLPIQTVNGATTYLGEVASVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLVSIQKSGDASTLKVVSDLKALLPRVEPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L +LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIVLSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I         +  ++  G        F S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTDLHDAILEGAGEIAVPAFVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + + R ++          RF 
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPQQASVGAERATGRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +       F R R W + +  +  +              +       LG       D  
Sbjct: 508 RLHRAFNAAFERLRAWYIVLLSMLLVRRRFYAGCFLGFCVLSTGLVFVLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++         P D 
Sbjct: 568 NIRLHMRAPTGYRIEETARLADRVERAVRDIVPPDE 603



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 89/278 (32%), Gaps = 5/278 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              +         +   + T+     I     + +  +      L  V S  +       
Sbjct: 212 NLTLPTGTAKMGPTEYRIDTNASADTIADITHLPIQTVNGATTYLGEVASVRDGFSPQTN 271

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +        +   +     ++     L+ +  ++   +P                  +
Sbjct: 272 VVRQNGQRGVLVSIQKSGDASTLKVVSDLKALLPRVEPTLPEGLTITPLFDQSVFVNAAV 331

Query: 667 RKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           +  I   +I + +  ++ +     W   L    ++ L I  +L   +  G   N+  +  
Sbjct: 332 QGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIVLSALGETINIMTLGG 391

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  V+D  V  + + +++ L        D I +   E    +  +++   I  +P
Sbjct: 392 LALAVGILVDDATVTIENIERHLHL---GTDLHDAILEGAGEIAVPAFVSTLCICIVFVP 448

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           M    G     F +P+A  +V A  +S  ++  ++  +
Sbjct: 449 MFFLTGVARYLF-VPLAEAVVFAMLASYVLSRTLVPTL 485



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  I+ +   +        + G   ++ A+   +  +G
Sbjct: 890  VAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 949

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +              ++    +   + T++A  I ++PMA+   
Sbjct: 950  VATANSILVVSFARQRLAA---GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1006

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1007 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1035


>gi|330985321|gb|EGH83424.1| multidrug RND efflux transporter, permease MdtC [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 1035

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/564 (11%), Positives = 158/564 (28%), Gaps = 39/564 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FRLLPVAPLPNMDFPVIV---------VSASLAGASPEVMASTVATPLERSLGSIAGVNT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  Q   +I L F  +R     A +V   +    + L    +            + +
Sbjct: 80  MTSNSSQGTTRIILQFDLNRDINGAAREVQAAINASRNLLPSGMRSMPTYKKVNPSQAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   ++   +    +            +       +       L  +  E +P  L Q  
Sbjct: 140 MV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGEVQIGGSSLPAVRIELEPQMLSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N  +                   +E   +                  
Sbjct: 199 VSLDDVRTAITGANVRRPKGFVEDDQHNWQVQANDQLETAKD------------------ 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                 +   +    +            + + +A  +   T+ 
Sbjct: 241 --YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIETVA 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA         V          +    + T  I   LV++V+F+ +   + 
Sbjct: 299 QIKAQLPALRAVLPASVSLNVAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ ++++ T A++ LLG +L   S+  ++L  GL VD  I+V E I        
Sbjct: 359 SLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENISRHIHNGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTA 503
               +  +G      T+   N++ +   + + F GG      R F+IT+ +SI++S+  +
Sbjct: 419 DPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSIVVSLIVS 478

Query: 504 ISIVRAMMIFIIRY------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +++   +    ++          +        R     D      MR R   +   ++  
Sbjct: 479 LTLTPMLCARWLKPHDSGKDNAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLLSLLITV 538

Query: 558 ICSICLLFTHGLNYGIDFKGGIQL 581
           + ++ L       +      G  +
Sbjct: 539 VVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     L G   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 97/271 (35%), Gaps = 6/271 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
               +N            V         V  S++   +    + +     +     + +  
Sbjct: 753  VMEVNPKYAQDPATLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDL 812

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +  +  +    +++ I  I   S I +             +     ++ + +A+ + + 
Sbjct: 813  AEGASLDKATVAIERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLG 872

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            I ++ +   L  ++TL       L    + G EF+L ++  +  LIG    + +++ D  
Sbjct: 873  ILYESYIHPLTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID-- 930

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
                      ++ ++ I  +  + L   + T+MAA +  LP+ +    G  +     + +
Sbjct: 931  LALHLERDQGMTPQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTI 990

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G++ +   +++    + L++   R +  +
Sbjct: 991  IGGLIFSQVLTLYTTPVVYLYLDRLRHRYNK 1021


>gi|194365416|ref|YP_002028026.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
 gi|194348220|gb|ACF51343.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
          Length = 1026

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 87/667 (13%), Positives = 198/667 (29%), Gaps = 57/667 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  IGL+ +      +  L+  P                   +     
Sbjct: 9   RRPVTTIMCFVSLVVIGLIASF-----RLPLEALPDISAPFLF---------VQIPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             + V   +    +E  + +        S       I + F+D  R     A      + 
Sbjct: 55  TPEEVERTIIRPVEESLATMTGIKRMRSSATSEAALIYIEFSDWDRDIAIAASDARERID 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S L  D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AIRSDLPDDLQRYNVFKWSSSDQPVLKVRLASTTDLTTAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +     ++    DP+RL     +  ++S      N S            D +G +
Sbjct: 172 ARVDITGAPPNEVEIAIDPNRLNAHGLSINELSERLRTLNFSISAGQI------DDNGQR 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+   EI+ +                   +    + A+         I    A +  G
Sbjct: 226 VRVQPVGEITDLQE-----------------MRDLVINAKGLRLGDIAEIRLKPARMSYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +       A      +RA +    + I    N   A   S 
Sbjct: 269 RRLDGNPAVGLDIFKERSANLVEVSRAALAEVEAIRAEASMRDVQIKVIDNQGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   +   L + VLF  + +    L+   +I +   +TL  +   G TL + ++ G
Sbjct: 329 LELAEAGGVGLILSVTVLFFFLRHWPSTLMVTLAIPICFTITLGFMYFAGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPGQPRLASIIGTRNVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLSR 530
           F         +   AIT+ +S+L S   A+S++  +   +   K + S    I       
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAVSLIPMLSARMTTPKLVHSKTGLIARLQHRY 508

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH------GLNYGIDFKGGIQLGVL 584
             L+   +  +        + + I      +  +          +  G  +KG      +
Sbjct: 509 AQLLDWSLRHRGWSLLGILLVVLISLVPMKLTKIDMFGGEGGKDIFIGYMWKGAYTYRQM 568

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +     +                +  +  ++     +      +     + E ++K + +
Sbjct: 569 SEEVARVESWIDQNRERLHVKQVYSWYSEQEGSSTVVTLDEKYAKDIKALQEELRKGLPK 628

Query: 645 IVPLSTI 651
                  
Sbjct: 629 SARTDYF 635



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 95/245 (38%), Gaps = 11/245 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +L S+ +G  + Q     +   + ++    + +      + ++  +  +   +    T  
Sbjct: 770  SLVSVDVGSSATQIGRTNRQTTLTIKANLAEKITAPDGRKAMESVLKPMNFPAGYGFTFD 829

Query: 657  VGPK-ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
             G      E +++ +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 830  GGDYGNDDEAMQQMVFNLLIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 889

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +  N++      +    + +   E L   + 
Sbjct: 890  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN-NLRRGGMGRT--QALVEGSRERLRPIMM 946

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            T   A ++++P+          G      A  +A G+  +   S+     I   + D R+
Sbjct: 947  TMGTAILAMVPISLTNTQMFGNGPEYAPMARAIAGGLAFSTVVSLLFLPTIYAVLDDLRS 1006

Query: 829  KNARI 833
               R+
Sbjct: 1007 AVTRL 1011



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 86/287 (29%), Gaps = 9/287 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R R     IS      +   +    +    D +    L + A       +    L+  ++
Sbjct: 206 RLRTLNFSISAGQIDDNGQRVRVQPVGEITDLQEMRDLVINAKGLRLGDIAEIRLKPARM 265

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                 + +      +  +            L  V+    E               K   
Sbjct: 266 SYGRRLDGNPAVGLDIFKERSANLVEVSRAALAEVEAIRAEASMRDVQIKVIDNQGKAVT 325

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             + +      +  I  +  ++   + W   L     + +  T TLGF    G+  N+  
Sbjct: 326 SSLLELAEAGGVGLILSVTVLFFFLRHWPSTLMVTLAIPICFTITLGFMYFAGVTLNILT 385

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF-- 780
           +  +L  +G  V++ VVV + + +  +          +I      T   ++  S      
Sbjct: 386 MMGLLLAVGMLVDNAVVVVESIYQERERMPGQPRLASII-----GTRNVAIALSAGTLCH 440

Query: 781 -ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I  +P      + I  F   +A  I V+  +S  +A  ++  +   
Sbjct: 441 CIVFVPNLFGETNNISIFMAQIAITISVSLLASWLVAVSLIPMLSAR 487



 Score = 45.1 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 51/525 (9%), Positives = 138/525 (26%), Gaps = 42/525 (8%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R+  W ++   ++  I L+      +     +                   G++     
Sbjct: 516  LRHRGWSLLGILLVVLISLVPMKLTKIDMFGGEGGKDIFIGYMWK-------GAY-TYRQ 567

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              ++     ++ + D+ R  L  + +  +   Q  +   ++       E  A  +    +
Sbjct: 568  MSEEV--ARVESWIDQNRERLHVKQVYSWYSEQEGSSTVVTLD-----EKYAKDIKALQE 620

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI-GISES 179
             +   L    + +  V     +     +Q    Q++  +     EI ++ +  +   +E 
Sbjct: 621  ELRKGLPKSARTDYFVGNQGGDGGGGGNQGVQVQLVGDSSSMLQEIGQEVVPLLAQRAEL 680

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               R+ +     +L    D  R         +++       +     + G        G+
Sbjct: 681  RDVRIDNGEKGGELKVRVDRERAAAFGFNAEQVA-------SFVGLALRGAPMREFRRGD 733

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +            +                +    + +                  L 
Sbjct: 734  NEVPVWVRFAGAEQSSPEDLAGFSVRTGDGRSVPLLSLVSVDVGSSATQIGRTNRQTTLT 793

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +   A  I                   A                          D    
Sbjct: 794  IKANLAEKITAPDG------------RKAMESVLKPMNFPAGYGFTFDGGDYGNDDEAMQ 841

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
             +       +  + +++  +         +       ++     L  + G +  + S  G
Sbjct: 842  QMVFNLLIALVMIYVVMAAVFESLLFPAAIMSGV-LFSIFGVFWLFWITGTSFGIMSFIG 900

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL-- 477
            I++ +G+ V++ I++ E I    R       +L  G       I  +  TA++A V +  
Sbjct: 901  ILVLMGVVVNNGIVMIEHINNLRRGGMGRTQALVEGSRERLRPIMMTMGTAILAMVPISL 960

Query: 478  ----FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
                 F  G      A  +   +  S   ++  +  +   +   +
Sbjct: 961  TNTQMFGNGPEYAPMARAIAGGLAFSTVVSLLFLPTIYAVLDDLR 1005


>gi|308063602|gb|ADO05489.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori Sat464]
          Length = 1028

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 64/568 (11%), Positives = 155/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 EKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESYYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     +     
Sbjct: 513 HKLIIFIAVVLVFVGSLFVASKIGMEFM 540



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   + 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 38.9 bits (88), Expect = 3.7,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPSYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|289648696|ref|ZP_06480039.1| multidrug RND efflux transporter, permease protein MdtC
           [Pseudomonas syringae pv. aesculi str. 2250]
          Length = 1035

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/564 (11%), Positives = 159/564 (28%), Gaps = 39/564 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FRLLPVAPLPNMDFPVIV---------VSASLAGASPEVMASTVATPLERSLGSIAGVNT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  Q   +I L F  +R     A +V   +    + L    +            + +
Sbjct: 80  MTSNSSQGTTRIILQFDLNRDINGAAREVQAAINASRNLLPSGMRSMPTYKKVNPSQAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   ++   +    +            +       +       L  +  E +P  L Q  
Sbjct: 140 MV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGEVQIGGSSLPAVRIEPEPQMLSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N  +   +               +E   +                  
Sbjct: 199 VSLDDVRTAITGANVRRPKGLVEDDLHNWQVQANDQLETAKD------------------ 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                 +   +    +            + + +A  +   T+ 
Sbjct: 241 --YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIETVA 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA         V          +    + T  I   LV++V+F+ +   + 
Sbjct: 299 QIKAQLPALRAVLPASVSLNVAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ ++++ T A++ LLG +L   S+  ++L  GL VD  I+V E I        
Sbjct: 359 SLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENISRHIHNGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTA 503
               +  +G      T+   N++ +   + + F GG      R F+IT+ +SI++S+  +
Sbjct: 419 DPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSIVVSLIVS 478

Query: 504 ISIVRAMMIFIIRY------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +++   +    ++          +        R     D      MR R   +   ++  
Sbjct: 479 LTLTPMLCARWLKPHDSGKDNAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLLSLLITV 538

Query: 558 ICSICLLFTHGLNYGIDFKGGIQL 581
           + ++ L       +      G  +
Sbjct: 539 VVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     L G   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 98/262 (37%), Gaps = 9/262 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +   + +     R  L S+   +    + +     +     + +   +  +  + 
Sbjct: 762  QDPVTLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKA 821

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
               +++ I  I   S I +             +     ++ + +A+ + + I ++ +   
Sbjct: 822  TVAIERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            L  ++TL       L    + G EF+L ++  +  LIG    + +++ D           
Sbjct: 882  LTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLERDQ 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++ ++ I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +  
Sbjct: 940  GMTPQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQV 999

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    + L++   R +  +
Sbjct: 1000 LTLYTTPVVYLYLDRLRHRYNK 1021


>gi|187778356|ref|ZP_02994829.1| hypothetical protein CLOSPO_01948 [Clostridium sporogenes ATCC
           15579]
 gi|187771981|gb|EDU35783.1| hypothetical protein CLOSPO_01948 [Clostridium sporogenes ATCC
           15579]
          Length = 422

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 81/198 (40%), Gaps = 4/198 (2%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +    +    K   +           VG  +    +   +   ++    + +
Sbjct: 207 VITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFL 266

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ I ++    L A   L+L I   L  F+       L+ +A  L  IG +V+  V++++
Sbjct: 267 FMIIYYRVP-GLLADIALVLYIVLVLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFE 325

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   T  S +  ++   +  L   + +++   I+ + +   G   +  FA+ + 
Sbjct: 326 RIREELK---TGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLM 382

Query: 803 FGIVVAASSSIFIAAPIL 820
            GI+++  ++I +   +L
Sbjct: 383 IGIILSMFTAIVVTRLLL 400



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 134/385 (34%), Positives = 228/385 (59%), Gaps = 26/385 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +L +   D+V    +++++E+I  R++++G+SE+T+ R G  RI I++PG+ +   +   
Sbjct: 61  MLEEIQADKVDEKTVDRTIELISMRVNKMGVSETTVTREGKKRIRIEIPGKYNAKEVIDS 120

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T ++ F                             +  + ++G  +  ATA  + + 
Sbjct: 121 VGKTGELKF--------------------------VGPDKSIILTGKDVKDATAYINQED 154

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           + P V +  +E GA++F + T+  IG+P+A+ +D   LT PV+   I +GKA I+G+ +I
Sbjct: 155 NSPTVGLDLNEAGAKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSI 214

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A ++++G+LP+ +  VE R VGA LG++++     A V G+ L+ LFMI+ Y  
Sbjct: 215 EEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFLFMIIYYRV 274

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD ++ L ++L LA  S + ATLTL  IAG +L IG+AVD+N+L+ ERIREE +  
Sbjct: 275 PGLLADIALVLYIVLVLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFERIREELKTG 334

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +L+ G+ RA S+I DSNIT +IA +VL+  G GAV+GFA+T+ + I++SMFTAI 
Sbjct: 335 KSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIV 394

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSR 530
           + R ++        +  +    + R
Sbjct: 395 VTRLLLKLGYDIGILNKLACFRVKR 419



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 74/250 (29%), Gaps = 6/250 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++N    ++   +  + + I          +  +        I+ GLDL+GG  ++ E+ 
Sbjct: 7   KSNKGKSVIIFTLLIVVIAIFAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQ 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
            D      +    + +   + K G+   ++ +    +I +        + + D V    +
Sbjct: 67  ADKVDEKTVDRTIELISMRVNKMGVSETTVTREGKKRIRIEIPGKYNAKEVIDSVGKTGE 126

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                  V P K++++T  + + +        +      ++ +    ++  D        
Sbjct: 127 LKF----VGPDKSIILTGKDVKDATAYINQEDNSPTVG-LDLNEAGAKKFADATKKFIGQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      +  P  Q      + + T +K         N  K     V          
Sbjct: 182 PIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTV 241

Query: 241 YLVEDKVEIS 250
                   + 
Sbjct: 242 GATLGANALD 251


>gi|13882410|gb|AAK46977.1| protein-export membrane protein SecD [Mycobacterium tuberculosis
           CDC1551]
          Length = 554

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 115/501 (22%), Positives = 209/501 (41%), Gaps = 32/501 (6%)

Query: 45  SLGLDLRGGSHLVLEVDEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS 101
            LG+DL+GG+ + L     D        L      + + +   G+    +    + + ++
Sbjct: 20  KLGIDLQGGTRVTLTARTPDGSAPSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVIT 79

Query: 102 FA--DSRFKENIADKVTLFLQGVNSKLNVDP---KKNLLVTTTEKEISIVLSQNNIDQVI 156
               D     N+     L+++ V + +   P   +     +   +      +        
Sbjct: 80  VPGNDGSEARNLGQTARLYIRPVLNSMPAQPAAEEPQPAPSAEPQPPGQPAAPPPAQSGA 139

Query: 157 SHAIEQSMEIIRQRIDQI-----------------GISESTIQRLGSHRILIQLPGEQDP 199
             + +   +      D                       +  ++  + RI  +    Q  
Sbjct: 140 PASPQPGAQPRPYPQDPAPSPNPTSPASPPPAPPAEAPATDPRKDLAERIAQEKKLRQST 199

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
           ++  Q++    + +  +     +             +D     +     ISG  +  AT+
Sbjct: 200 NQYMQMVALQFQATRCESDDILAGNDDPKLPLVTCSTDHKTAYLLAPSIISGDQIQNATS 259

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
             D +    VVD+ F    A  + + T  +IG   A  LD +V++AP I +AIP G+ QI
Sbjct: 260 GMDQRGIGYVVDLQFKGPAANIWADYTAAHIGTQTAFTLDSQVVSAPQIQEAIPGGRTQI 319

Query: 320 SGN---FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
           SG    FT  TA  LA +L+ GSLP+     E + V A LG  S+  G  A   GL+L++
Sbjct: 320 SGGDPPFTAATARQLANVLKYGSLPLSFEPSEAQTVSATLGLSSLRAGMIAGAIGLLLVL 379

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNI 432
           ++ ++ Y   GL+   S+  +  +  A+L LL      TL L  IAG+++GIG   DS +
Sbjct: 380 VYSLLYYRVLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFV 439

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITM 492
           +  ERI++E R+ +S   ++  G++RA  TI   N    +A  VL+F   G V+GFA T+
Sbjct: 440 VFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTL 499

Query: 493 GLSILISMFTAISIVRAMMIF 513
           GL+ ++ +     +   ++  
Sbjct: 500 GLTTILDLVVVFLVTWPLVYL 520



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 44/136 (32%), Gaps = 23/136 (16%)

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDK--------------------VVVYDRMRK 746
            LG      +  + + V A+L L+G  +N                      VV ++R++ 
Sbjct: 388 VLGLLTALSLVASGSMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKD 447

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++      SFR  + +         V  +   F++   +       +  FA  +    +
Sbjct: 448 EIRE---GRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTI 504

Query: 807 VAASSSIFIAAPILLF 822
           +       +  P++  
Sbjct: 505 LDLVVVFLVTWPLVYL 520


>gi|322379136|ref|ZP_08053533.1| preprotein translocase subunit SecD [Helicobacter suis HS1]
 gi|322380434|ref|ZP_08054636.1| preprotein translocase subunit SecD [Helicobacter suis HS5]
 gi|321147145|gb|EFX41843.1| preprotein translocase subunit SecD [Helicobacter suis HS5]
 gi|321148432|gb|EFX42935.1| preprotein translocase subunit SecD [Helicobacter suis HS1]
          Length = 527

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 156/543 (28%), Positives = 267/543 (49%), Gaps = 32/543 (5%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +++ +    G+  +LP+FL             +  +SL          +L V   + +  
Sbjct: 1   MVFMLAFIFGVGFSLPSFLQTKGPKITLGLDLRGGLSL----------LLGVQVQEALKN 50

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
                +  L    K++ + +  +R     ++ +  D    +++A  +             
Sbjct: 51  KYASIATSLDYAFKQQNLLIQDLRSSLQGVSFTLLDKDDAKSVAHILEDL---------- 100

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
             K  + +  ++   ++  S      +    + Q +  IR R+DQ G++E T+ + G   
Sbjct: 101 -RKDGIEIFVSQNSYNLHFSFEKAQALKQQTVVQVISTIRNRLDQFGLAEPTVLQQGKDA 159

Query: 189 ILIQLPGEQDPS---RLRQLLGTTAKMSFHKVLPNNS--------KKGFMFGVRFLRDSD 237
           IL+QLPG +      R + L+  +A +    V    +         +    G   L  + 
Sbjct: 160 ILVQLPGIKSIEEEQRAKDLITKSAHLQMMAVDEQKNEYLDQLSSAEIEKLGDVVLSYTG 219

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               L+   V I    +         K ++PVV  S +  GA+ F + +  N+GK +AVV
Sbjct: 220 ERGKLLLKAVPILDGEMLTNAQVVYDKDNRPVVSFSLNAQGAKIFGDFSGANVGKRMAVV 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           LD +V +AP I + I  G  QISGNFT+  A  LA  LR+G L   L ++E+R +G  LG
Sbjct: 280 LDNKVYSAPYIRERIGGGSGQISGNFTVAQASDLAIALRSGVLSAPLVVLEKRIIGPSLG 339

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +DSI     A+++G +L+++FMI  Y   G++A  ++ +N+ L +A++++ GATLTLP +
Sbjct: 340 TDSIKTSIVALISGFILVMVFMIAYYALAGVIASMALIVNLFLIVAVMAIFGATLTLPGM 399

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGIVL +G+AVD+NI++NERIRE  R N+SV  +L  G++ A   IFDSN+T+LIA+++L
Sbjct: 400 AGIVLTVGMAVDANIIINERIREGLRANESVAQALFSGYANASRAIFDSNLTSLIASLLL 459

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           + +G G+V+GFA+T G+ IL S+ TAI   +     I+     K            +   
Sbjct: 460 YAYGTGSVKGFALTTGIGILASILTAIIGTQGFYQAILPKLSRKKNLYLWFGVSQSVKHH 519

Query: 538 IAI 540
             I
Sbjct: 520 KRI 522



 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 72/156 (46%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I+  IV +I   I +++++   +     + A   LI+++   +   A+FG  
Sbjct: 335 GPSLGTDSIKTSIVALISGFILVMVFMIAYYAL-AGVIASMALIVNLFLIVAVMAIFGAT 393

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++      S    +             +++
Sbjct: 394 LTLPGMAGIVLTVGMAVDANIIINERIREGLRANE---SVAQALFSGYANASRAIFDSNL 450

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+ L +  +G   +  FA+    GI+ +  ++I
Sbjct: 451 TSLIASLLLYAYGTGSVKGFALTTGIGILASILTAI 486


>gi|298487210|ref|ZP_07005259.1| multi-drug efflux transporter [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158234|gb|EFH99305.1| multi-drug efflux transporter [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 1035

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 66/564 (11%), Positives = 158/564 (28%), Gaps = 39/564 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FRLLPVAPLPNMDFPVIV---------VSASLAGASPEVMASTVATPLERSLGSIAGVNT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  Q   +I L F  +R     A +V   +    + L    +            + +
Sbjct: 80  MTSNSSQGTTRIILQFDLNRDINGAAREVQAAINASRNLLPSGMRSMPTYKKVNPSQAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   ++   +    +            +       +       L  +  E +P  L Q  
Sbjct: 140 MV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGEVQIGGSSLPAVRIELEPQMLSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N  +                   +E   +                  
Sbjct: 199 VSLDDVRTAITGANVRRPKGFVEDDQHNWQVQANDQLETAKD------------------ 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                 +   +    +            + + +A  +   T+ 
Sbjct: 241 --YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIETVA 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA         V          +    + T  I   LV++V+F+ +   + 
Sbjct: 299 QIKAQMPALRAVLPASVSLNVAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ ++++ T A++ LLG +L   S+  ++L  GL VD  I+V E I        
Sbjct: 359 SLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENISRHIHNGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTA 503
               +  +G      T+   N++ +   + + F GG      R F+IT+ +SI++S+  +
Sbjct: 419 DPMKAAFLGAKEVGFTLLSINVSLVAVFISILFMGGLVESLFREFSITLSVSIVVSLIVS 478

Query: 504 ISIVRAMMIFIIRY------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +++   +    ++          +        R     D      MR R   +   ++  
Sbjct: 479 LTLTPMLCARWLKPHDSGKDNAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLLSLLITV 538

Query: 558 ICSICLLFTHGLNYGIDFKGGIQL 581
           + ++ L       +      G  +
Sbjct: 539 VVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     L G   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSINVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 97/258 (37%), Gaps = 9/258 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             +   + +     R  L S+   +    + +     +     + +   +  +  +    +
Sbjct: 766  TLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKATVAI 825

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
            ++ I  I   S I +             +     ++ + +A+ + + I ++ +   L  +
Sbjct: 826  ERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHPLTIL 885

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            +TL       L    + G EF+L ++  +  LIG    + +++ D            ++ 
Sbjct: 886  STLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLERDQGMTP 943

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++ I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +   +++
Sbjct: 944  QESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQVLTLY 1003

Query: 815  IAAPILLFIYDWRAKNAR 832
                + L++   R +  +
Sbjct: 1004 TTPVVYLYLDRLRHRYNK 1021


>gi|209521566|ref|ZP_03270266.1| acriflavin resistance protein [Burkholderia sp. H160]
 gi|209498005|gb|EDZ98160.1| acriflavin resistance protein [Burkholderia sp. H160]
          Length = 1012

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 158/542 (29%), Gaps = 40/542 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GL       L    + ++P       +++  D  G         
Sbjct: 8   RRPVLASVVSLLILVLGL-----RALAVLKVSQYPQ-TENAVVTIKTDYYG--------A 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    +   +  +       +     + I  +   +        ++   +  
Sbjct: 54  NADTIAGFITQPLEAAIAQAQGIDYMSSTSVTGVSTIIATLRLNYDSNRALTEINTQIGS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++ +L   T +    +        + S+ +  +  ++R    ++   +   
Sbjct: 114 VRNQLPPQAQQPVLTVQTGQTTDAMYMGFYSSVLPSNNV--TDYLLRVVKPKLDSIQGVQ 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D +RL     + + +                G      + G   
Sbjct: 172 TAEVLGGRQFAMRAWLDSARLAAHGVSASDVFTAL------------GNNNYLATLGTTK 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V++          +F          +   +            N+           
Sbjct: 220 GQMVSVDLDAGTDLHTVDDFKQ--------LVVKQKNGSIVRLEDVANVVLGADSYDFNV 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +     +    +   L+          +          +   
Sbjct: 272 AFSGKRSVFIGIKVAPDANILDVAKRVKAVFPDLQKQFPTGMTGDIVYDATDFVNTAIQE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V IV+F+ +   +  +V   ++ L++I T  ++ +LG ++ L ++  +V
Sbjct: 332 VIKTLVEALVIVTIVIFLFLGTFRAVIVPLIAMPLSLIGTFFVMQVLGYSINLLTLLALV 391

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +   ++ + +  +        I    +  +     + F 
Sbjct: 392 LAIGLVVDDAIIVVENVDRHMKHEGRTPYDAALIAARELGGPIVAMTVVLIAVYAPIGFQ 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G     FA T+  ++ +S   A+++   M     R ++        + R F     
Sbjct: 452 GGLTGALFTEFAFTLAGAVTVSGVIALTLSPMMCSRFFRAEQESGRFTRFVDRQFERVHR 511

Query: 538 IA 539
             
Sbjct: 512 GY 513



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 84/235 (35%), Gaps = 6/235 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V + +      D +         F+        + +   + ++ V   + +  
Sbjct: 250 SIVRLEDVANVVLGADSYDFNVAFSGKRSVFIGIKVAPDANILDVAKRVKAVFPDLQKQF 309

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P     +            I++ I  ++ + + + I I++    +   +  +  + L + 
Sbjct: 310 PTGMTGDIVYDATDFVNTAIQEVIKTLVEALVIVTIVIFLFLGTFRAVIVPLIAMPLSLI 369

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     + G   NL  + A++  IG  V+D ++V + +  +  +     +  D    + 
Sbjct: 370 GTFFVMQVLGYSINLLTLLALVLAIGLVVDDAIIVVENV--DRHMKHEGRTPYDAALIAA 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            E  G  V  ++       P+   G   G++   FA  +A  + V+   ++ ++ 
Sbjct: 428 RELGGPIVAMTVVLIAVYAPIGFQGGLTGALFTEFAFTLAGAVTVSGVIALTLSP 482



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ ++++ I + + +  +F+ +   +  + ++ + +   L F  +     N+     ++T
Sbjct: 848  VITLMLATIIVFLALAAQFESFRDPIVILISVPMALFGALIFINIGLTTLNIYTQVGLVT 907

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G      +++        +L     + R+ ++++    L   + T+ +  + V+P+ +
Sbjct: 908  LMGLVSKHGILIVQFAN---QLQRAGRTKREALEEAAGVRLRPILMTTASMVLGVVPLVI 964

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G+         + +  G+ +    ++F+   + +F+     ++A
Sbjct: 965  ASGAGAAGRNAMGLVIFTGMSIGTLFTLFVVPAMYMFLAADHQRHA 1010


>gi|269792827|ref|YP_003317731.1| protein-export membrane protein SecD [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100462|gb|ACZ19449.1| protein-export membrane protein SecD [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 457

 Score =  137 bits (345), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 129/484 (26%), Positives = 212/484 (43%), Gaps = 63/484 (13%)

Query: 41  KNRISLGLDLRGGSHLVLEVDE---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQN 96
             RI LGLDL+GG+ ++L       +      +Q     LR+ + + G+    +++   +
Sbjct: 27  DGRIRLGLDLKGGAQILLRAKGTPDNPLTEDGIQRLLAVLRNRIDQYGVVEPQIQRQGGD 86

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK--KNLLVTTTEKEISIVLSQNNIDQ 154
           +I +        +   D +          +                       +     +
Sbjct: 87  RILVLLPGVEDPDAALDLIGKTALLEFRSVLGASPELPPGPERRNYDSDEAYNAAKARWE 146

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
            I    +Q  E +R+   +  +      +    R  +          L+    +  +   
Sbjct: 147 AIKAQADQVAEEMRKSAPEGSLV----AKGEDGRWYLLGRPYLTGKELKDARTSFDQFGR 202

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
             V    +  G          + G Q      + + G+ ++                   
Sbjct: 203 PVVSLKFNDAGAKLFDEATAQNVGRQI----AIVLDGVVVS------------------- 239

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
                                         APV+ + I  G+AQISG FT   A  LA M
Sbjct: 240 ------------------------------APVVQERIRGGEAQISGRFTEAEAKRLAIM 269

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           LRAG+LP+ + I+E R+VG  LG+DSI +G  A + G  L+ LFM+V YG  GL AD ++
Sbjct: 270 LRAGALPVGVEILENRSVGPTLGADSISRGIRAGLIGAGLVALFMLVFYGLMGLAADVAL 329

Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
            + V L +A + LL +TLTLP I GI+L IG+AVD NIL+ ERI+EE R  +++  +LD 
Sbjct: 330 AVAVTLVMAAMVLLKSTLTLPGIGGIILTIGMAVDGNILIYERIKEERRAGKTLLAALDA 389

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GF +A + I DSN+T LIA  VLF+FG G +RGFA+T+ + ++ S+F  + + RA++  +
Sbjct: 390 GFRKALTVILDSNVTTLIAAAVLFYFGTGPIRGFAVTLSIGVVASVFCNVVVTRAILQIL 449

Query: 515 IRYK 518
           +  +
Sbjct: 450 MGRR 453



 Score =  112 bits (278), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 76/173 (43%), Gaps = 4/173 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + I +GI   +I A  + +++ + +     L A   L + +T  +    L  
Sbjct: 286 SVGPTLGADSISRGIRAGLIGAGLVALFMLVFYGL-MGLAADVALAVAVTLVMAAMVLLK 344

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +  ++  IG +V+  +++Y+R+++  +      +    +D    + L   + +
Sbjct: 345 STLTLPGIGGIILTIGMAVDGNILIYERIKEERRA---GKTLLAALDAGFRKALTVILDS 401

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++   I+   +  +G   I  FA+ ++ G+V +   ++ +   IL  +   R 
Sbjct: 402 NVTTLIAAAVLFYFGTGPIRGFAVTLSIGVVASVFCNVVVTRAILQILMGRRR 454


>gi|168181753|ref|ZP_02616417.1| protein-export membrane protein SecD [Clostridium botulinum Bf]
 gi|237796519|ref|YP_002864071.1| preprotein translocase subunit SecD [Clostridium botulinum Ba4 str.
           657]
 gi|182675120|gb|EDT87081.1| protein-export membrane protein SecD [Clostridium botulinum Bf]
 gi|229261363|gb|ACQ52396.1| protein-export membrane protein SecD [Clostridium botulinum Ba4
           str. 657]
          Length = 422

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 81/198 (40%), Gaps = 4/198 (2%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +    +    K   +           VG  +    +   +   ++    + +
Sbjct: 207 VITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFL 266

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + ++    L A   L+L I   L  F+       L+ +A  L  IG +V+  V++++
Sbjct: 267 FMILYYRVP-GLLADIALVLYIVLVLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFE 325

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   T  S +  ++   +  L   + +++   I+ + +   G   +  FA+ + 
Sbjct: 326 RIREELK---TGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLM 382

Query: 803 FGIVVAASSSIFIAAPIL 820
            GI+++  ++I +   +L
Sbjct: 383 IGIILSMFTAIVVTRLLL 400



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 134/385 (34%), Positives = 227/385 (58%), Gaps = 26/385 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +L +   D+V    +++++E+I  R++++G+SE+T+ R G  RI I++PG+ +   +   
Sbjct: 61  MLEEIQADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDS 120

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T ++ F                             +    ++G  +  ATA  + + 
Sbjct: 121 VGKTGELKF--------------------------VGPDKSTILTGKDVKDATAYINQED 154

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           + P V +  +E G ++F + T+  IG+P+A+ +D   LT PV+   I +GKA I+G+ +I
Sbjct: 155 NSPTVGLDLNESGTKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSI 214

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A ++++G+LP+ +  VE R VGA LG++++     A V G+ L+ LFMI+ Y  
Sbjct: 215 EEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFLFMILYYRV 274

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD ++ L ++L LA  S + ATLTL  IAG +L IG+AVD+N+L+ ERIREE +  
Sbjct: 275 PGLLADIALVLYIVLVLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFERIREELKTG 334

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +L+ G+ RA S+I DSNIT +IA +VL+  G GAV+GFA+T+ + I++SMFTAI 
Sbjct: 335 KSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIV 394

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSR 530
           + R ++        + S+    + R
Sbjct: 395 VTRLLLKLGYDIGILNSLACFRVKR 419



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 75/250 (30%), Gaps = 6/250 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++N    ++   +  + + +          +  +        I+ GLDL+GG  ++ E+ 
Sbjct: 7   KSNKGKSVIIFTLLIVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQ 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D      +    + +   + K G+   ++ R+ Q +I +        + + D V    +
Sbjct: 67  ADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDSVGKTGE 126

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                  V P K+ ++T  + + +        +      ++ +    ++  D        
Sbjct: 127 LKF----VGPDKSTILTGKDVKDATAYINQEDNSPTVG-LDLNESGTKKFADATKKFIGQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      +  P  Q      + + T +K         N  K     V          
Sbjct: 182 PIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTV 241

Query: 241 YLVEDKVEIS 250
                   + 
Sbjct: 242 GATLGANALD 251


>gi|119774556|ref|YP_927296.1| AcrB/AcrD/AcrF family protein [Shewanella amazonensis SB2B]
 gi|119767056|gb|ABL99626.1| AcrB/AcrD/AcrF family protein [Shewanella amazonensis SB2B]
          Length = 1019

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 86/678 (12%), Positives = 204/678 (30%), Gaps = 43/678 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+ +  I   G+            L+ FP       +           +  +  
Sbjct: 9   RRPVTTVMCFVAILLFGMAST-----RLLPLELFPGIDIPQVM---------VQVPYKGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + +           Q    I LS          + +    +  
Sbjct: 55  TPAEVERDITRVLEESLATMSGIEKMTSESSQDGAFIELSMKWGENTATKSLEAREKVDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++  +   +  ++ I   + + D+ +S A +   + +RQ    +   E   
Sbjct: 115 VRHLLPKDVERVFIQQFSTSDMPIFNLRISSDRELSGAYDLLEKQLRQ---PLERVEGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         Q+    D   L     ++A+++      N    G              + 
Sbjct: 172 QVTLYGVEQKQISIRVDADLLAASGISSAELNRRLQAENFVIAGGTLRQDKSVYQVSPKG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 EI  + L       D       +    +     + + V  D   +  A +++  
Sbjct: 232 EFRSLKEIEDLVLTRGVRLGDIARINYELPERIEGRHLDQRYAVGLDVFKESGANLVEVS 291

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                VI +     +      F +E                               S   
Sbjct: 292 ARVMRVIEEVKADKQFSGIKLFIME-----------------------DQAEGVKSSLWD 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L   VL++ +      L+   S+ +++ +TLA + LLG +L + S+ G++
Sbjct: 329 LMMAGLIGAALSFAVLYLFLRNMGMTLIVVSSVPISICMTLAAMYLLGYSLNILSMMGLL 388

Query: 422 LGIGLAVDSNILVNERIREENRK--NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L +G+ +D+ ++V E + +E +K  ++S   ++  G  +    +    +T  I      F
Sbjct: 389 LAVGMLIDNAVVVTESVLQEKQKELHESKDKAVLAGVDKVALAVLAGTLTTAIVFFPNIF 448

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI- 538
                +  F   + ++I IS+  ++ + + ++  ++    +   D    SR     +   
Sbjct: 449 GAKVQLTIFLEHVAIAICISLGASLLVAKTLIPLMLTRIHIHHEDKTQKSRVQRFYEESL 508

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                  ++      ++ +  ++ L            K  + +         L+V  + +
Sbjct: 509 NWVLTHPKWSTFIAVLMLASTALPLANVKQDQEDGANKQRLFINYQIEGRHALAVTEAVV 568

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
             ++    + +      +       +   S    +       +  +           I  
Sbjct: 569 AEMESYLYAHKEEFFIDSVYSYYNPERASSTVLFKKGAEFDLEALKKSMREGFPKFSIAK 628

Query: 659 PKISRELIRKGIVGVIIS 676
           P+      R+G+   +  
Sbjct: 629 PQFGWSNDRQGVRVTLTG 646



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 83/208 (39%), Gaps = 12/208 (5%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                 E +K+ ++ +      + +   G +   E  +  +V ++++   + I +   F+
Sbjct: 792 TTEEAQEKIKQAMSHLNLPHGYEYSLRGGFERQDEDQQIMVVNMLLAVAMIYIVMAALFE 851

Query: 690 WYFALGAITT-LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                 AI T ++  IT       L G    + A+  +L L+G  VN+ +V+ D++    
Sbjct: 852 SLLLPSAIITSILFSITGVFWALWLTGTPNGVMAMIGILILMGIVVNNGIVLVDQI---- 907

Query: 749 KLYTTSISFRDLIDKSINET-LGRSVYTSMAAFISVLPMAV------WGGSVIGSFAIPM 801
              T S+        ++  T L   + T     + ++P+A+       GG      AI +
Sbjct: 908 NQMTPSLEELSATIHAVCITRLRPVLMTVGTTVLGLVPLAMGDTQIGGGGPPYYPMAIAI 967

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G+  +  +S+F+       +Y  R +
Sbjct: 968 IGGLSFSTVTSLFLVPLCYQALYRLRHR 995



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 63/154 (40%), Gaps = 2/154 (1%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  +    ++Y+++R      L  ++++ + I  TL    L G   N+ ++  +L  +G 
Sbjct: 335 IGAALSFAVLYLFLR-NMGMTLIVVSSVPISICMTLAAMYLLGYSLNILSMMGLLLAVGM 393

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            +++ VVV + + +  +      S    +   +++     +  ++   I   P       
Sbjct: 394 LIDNAVVVTESVLQEKQKELH-ESKDKAVLAGVDKVALAVLAGTLTTAIVFFPNIFGAKV 452

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +  F   +A  I ++  +S+ +A  ++  +   
Sbjct: 453 QLTIFLEHVAIAICISLGASLLVAKTLIPLMLTR 486


>gi|320324623|gb|EFW80700.1| multidrug RND efflux transporter, permease protein MdtC
           [Pseudomonas syringae pv. glycinea str. B076]
 gi|320328995|gb|EFW84994.1| multidrug RND efflux transporter, permease protein MdtC
           [Pseudomonas syringae pv. glycinea str. race 4]
          Length = 1035

 Score =  137 bits (345), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 66/564 (11%), Positives = 158/564 (28%), Gaps = 39/564 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FRLLPVAPLPNMDFPVIV---------VSASLAGASPEVMASTVATPLERSLGSIAGVNT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  Q   +I L F  +R     A +V   +    + L    +            + +
Sbjct: 80  MTSNSSQGTTRIILQFDLNRDINGAAREVQAAINASRNLLPSGMRSMPTYKKVNPSQAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   ++   +    +            +       +       L  +  E +P  L Q  
Sbjct: 140 MV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGEVQIGGSSLPAVRIELEPQMLSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N  +                   +E   +                  
Sbjct: 199 VSLDDVRTAITGANVRRPKGFVEDDQHNWQVQANDQLETAKD------------------ 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                 +   +    +            + + +A  +   T+ 
Sbjct: 241 --YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIETVA 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA         V          +    + T  I   LV++V+F+ +   + 
Sbjct: 299 QIKAQLPALRAVLPASVSLNVAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ ++++ T A++ LLG +L   S+  ++L  GL VD  I+V E I        
Sbjct: 359 SLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENISRHIHNGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTA 503
               +  +G      T+   N++ +   + + F GG      R F+IT+ +SI++S+  +
Sbjct: 419 DPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSIVVSLIVS 478

Query: 504 ISIVRAMMIFIIRY------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +++   +    ++          +        R     D      MR R   +   ++  
Sbjct: 479 LTLTPMLCARWLKPHDSGKDNAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLLSLLITV 538

Query: 558 ICSICLLFTHGLNYGIDFKGGIQL 581
           + ++ L       +      G  +
Sbjct: 539 VVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     L G   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 97/258 (37%), Gaps = 9/258 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDI---SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             +   + +     R  L S+   +    + +     +     + +   +  +  +    +
Sbjct: 766  TLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDLAEGASLDKATVAI 825

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAI 697
            ++ I  I   S I +             +     ++ + +A+ + + I ++ +   L  +
Sbjct: 826  ERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLGILYESYIHPLTIL 885

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            +TL       L    + G EF+L ++  +  LIG    + +++ D            ++ 
Sbjct: 886  STLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID--LALHLERDQGMTP 943

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            ++ I  +  + L   + T+MAA +  LP+ +    G  +     + +  G++ +   +++
Sbjct: 944  QESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTIIGGLIFSQVLTLY 1003

Query: 815  IAAPILLFIYDWRAKNAR 832
                + L++   R +  +
Sbjct: 1004 TTPVVYLYLDRLRHRYNK 1021


>gi|221065775|ref|ZP_03541880.1| acriflavin resistance protein [Comamonas testosteroni KF-1]
 gi|220710798|gb|EED66166.1| acriflavin resistance protein [Comamonas testosteroni KF-1]
          Length = 1057

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 71/542 (13%), Positives = 154/542 (28%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +  +G +      +       +P+                    L    
Sbjct: 10  RPIATMLLTIGMALVGGVAYFLLPVAPLPQVDYPTIS--------------VTASLPGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S      +ITL F  +R  ++ A  V   +   
Sbjct: 56  PDTMAATVATPLERALGAIAGVNEMTSSSSMGSTRITLQFDLTRTVDSAAHDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L      N          + ++    +        +           ++   E   Q
Sbjct: 116 RTLLPSGMPGNPTYRKVNPADAPIMI-LALTSDSLTRGQMYDAASTVLAQKLAQVEGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +   L  +  E DP RL     +   +       N ++                   
Sbjct: 175 ASINGGALPAVRVELDPVRLAANGVSLDAVRTAITATNANRPLGAVERE----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                     H      N   +T      +                ++   +  V +  V
Sbjct: 224 ---------DHYWQVATNDQARTAAEYAPLVLRWNNGNAVRLSDVADVTDSVQDVRNYGV 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +   +++    +   LRA   P     V          S    
Sbjct: 275 MNGKPAVLLQVFKQPDANILQSVDKVRAMLPQLRASINPAIDVTVISDRTPTLRASVKEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V+F+ +   +  L+   ++  +++ T  ++ L G TL   S+  + +
Sbjct: 335 QNALLISIALVIMVVFVFLRRLRATLIPAVAVPASLMGTFGIMYLCGYTLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +     + +S   +   G      T+   +++ +   V + F   
Sbjct: 395 AAGFVVDDAIVVLENVMRHMERGKSAMQAAIEGAREIGFTVVSMSLSLIAVFVPILFMAG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+ M  +IL+SM  +++    M   ++R    +       +R        A
Sbjct: 455 VVGRFFREFAVVMSAAILVSMIISLTTTPMMCAALLRTPADEERRRAERARRPFTRRWDA 514

Query: 540 IQ 541
             
Sbjct: 515 FW 516



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 79/235 (33%), Gaps = 7/235 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V    +S+Q               L   +    + +     +  +  ++   +
Sbjct: 252 NAVRLSDVADVTDSVQDVRNYGVMNGKPAVLLQVFKQPDANILQSVDKVRAMLPQLRASI 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDIT 705
             +             R  +++    ++IS   +++ ++    +    L     +   + 
Sbjct: 312 NPAIDVTVISDRTPTLRASVKEVQNALLISIALVIMVVFVFLRRLRATLIPAVAVPASLM 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G   L G   +  ++ A+    G+ V+D +VV + +   M+      S      +  
Sbjct: 372 GTFGIMYLCGYTLDNLSLMALTVAAGFVVDDAIVVLENV---MRHMERGKSAMQAAIEGA 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
            E     V  S++     +P+    G V      FA+ M+  I+V+   S+    
Sbjct: 429 REIGFTVVSMSLSLIAVFVPILFMAGVVGRFFREFAVVMSAAILVSMIISLTTTP 483



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 91/248 (36%), Gaps = 6/248 (2%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                    +  +    +                   + Y    +V+ ++  + ++  + E
Sbjct: 787  FVNSAGQQIPLTAFARITTSTTPLSVQHQSGTPASTVSYNLSPNVSLSQANDAIRNAMLE 846

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
            +    +I+ +        ++ +    + ++ + I + + + I ++     L  ++TL   
Sbjct: 847  LGVPVSIRGSFSGSAGAFQQALAGQPLLILAAIITIYLVLGILYENLVHPLTILSTLPSA 906

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L     F  EF+L A   V+ LIG    + +++ D   +  +      +    I +
Sbjct: 907  GVGALLALMWFKTEFSLIAFIGVILLIGLVKKNAIMMIDFALE--REKGGHATAAQAIYR 964

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            + +  L   + T+MAA    LP+A+    G  +     I +  G++++   +++    + 
Sbjct: 965  ACHLRLRPILMTTMAALFGALPLALGRGDGAELRQPLGIAIVGGLLLSQLLTLYTTPVVY 1024

Query: 821  LFIYDWRA 828
            + +   R 
Sbjct: 1025 VLLDRVRR 1032


>gi|110639190|ref|YP_679399.1| cation efflux protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110281871|gb|ABG60057.1| cation efflux protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 1050

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/517 (10%), Positives = 142/517 (27%), Gaps = 40/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +++  +   G +                                    +    
Sbjct: 9   KRPLLITVIFFTLILFGWISYKSLNYNLLPKFEVNVIT--------------VQTIYRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  + ++   +   +  +  + I L         N        +  
Sbjct: 55  SSDEIQSSITKPVEDAVASIEGIDVITSTSMEGVSMIVLQLKPGTSTINAQRDAERKINE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    ++      EI ++              +    I ++    +   E   
Sbjct: 115 IKATLPDDVDDPVIRRVNLDEIPVLKI---SATANMTQGQLYDLIDQKVKPLMLNVEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    D  +L+    ++A ++                         N  
Sbjct: 172 TVSIIGGNEREIKITLDNDKLQAYGISSALVNQIIANS-------------------NSS 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                VE +   L+           +    +  +     R        +   LA      
Sbjct: 213 YPAGSVETTDDRLSIRMNAKVTTVDELRNLVITENKDGSRVLVKDVATVTDGLAESTTIN 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSDS 360
            +            ++  +     + A      L+   +       +        L S  
Sbjct: 273 RINGQSGIGIEIIKQSDANTVNVSQNAKKRLEELKVLYAAQGFNYQIASDQSVYTLASAD 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   +V  V+ + +   +  L    +I   +I T  L+ + G +L L ++ G+
Sbjct: 333 AVIHDLFLAVLIVGSVMLLFLHSFRSSLFVLVAIPSAMIPTFILMYVFGFSLNLMTLMGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD +I+V E I       ++   +   G S    T     +  ++  + L   
Sbjct: 393 SLVVGILVDDSIVVLENIFRHLEMGKNKVQASLDGRSEIGFTAIAITLVDVVVFLPLSLS 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               G  +R F++ +  S L+S+F + ++   +    
Sbjct: 453 TGIIGNILREFSLVVVFSTLMSLFVSFTLTPLLASRW 489



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/259 (13%), Positives = 84/259 (32%), Gaps = 15/259 (5%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             L +  N+     +V+           S           + ++           V +  
Sbjct: 240 RNLVITENKDGSRVLVKDVATVTDGLAESTTINRINGQSGIGIEIIKQSDANTVNVSQNA 299

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-----ISAIAMLIYIWIRFKWYFA 693
           KK++ E+  L   Q                    VI        I   + +     +  +
Sbjct: 300 KKRLEELKVLYAAQGFNYQIASDQSVYTLASADAVIHDLFLAVLIVGSVMLLFLHSFRSS 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  +  +   +  T     +FG   NL  +  +  ++G  V+D +VV + +    +    
Sbjct: 360 LFVLVAIPSAMIPTFILMYVFGFSLNLMTLMGLSLVVGILVDDSIVVLENI---FRHLEM 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +         +E    ++  ++   +  LP+++     G+++  F++     +V +  
Sbjct: 417 GKNKVQASLDGRSEIGFTAIAITLVDVVVFLPLSLSTGIIGNILREFSLV----VVFSTL 472

Query: 811 SSIFIAAPILLFIYDWRAK 829
            S+F++  +   +    AK
Sbjct: 473 MSLFVSFTLTPLLASRWAK 491



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 77/220 (35%), Gaps = 7/220 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                                ++  ++  + +      I        K  ++      + +
Sbjct: 809  TNRMNSIKVTSAAVGRPSGTIVADIQAALEKQKLPEGILIDYQGDAKNQKDAFGSLGMAM 868

Query: 674  IISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++  I + LI + +     +    + ++ + +       AL     ++ A+  ++ L+G 
Sbjct: 869  LMGIILVYLIMVALYESIVYPFVVLFSIPVAMIGAFLALALSMETMSIFAIVGLIMLLGL 928

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D       L    +S  D + ++  E L   + T++A    +LP+A+    
Sbjct: 929  VAKNGILIVDF---TNHLKAEGMSRFDALVEAGKERLRPILMTTIAMITGMLPIALATSS 985

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G  V    A  +  G+  +   ++F+   + + I     +
Sbjct: 986  GAEVKNGMAWVIIGGLTSSLILTLFLVPTMYMIIDTAIER 1025


>gi|209886880|ref|YP_002290737.1| cation efflux system protein CusA [Oligotropha carboxidovorans OM5]
 gi|209875076|gb|ACI94872.1| cation efflux system protein CusA [Oligotropha carboxidovorans OM5]
          Length = 1246

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 72/591 (12%), Positives = 166/591 (28%), Gaps = 42/591 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++I        G+       L    LD  P       I          +      
Sbjct: 11  RNLMLVLIGTVFAVTAGIYA-----LRTLPLDAIPDLSDVQVI---------VYTEYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLNT 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L       L    T        +    +  ++        I+R     I  +E   
Sbjct: 117 AARRLPTGVAPTLGPDATGVGWVYQYAVVAKNMTLAELRSVQDWIVRY---GISKAEGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP +LR    +  K+       N    G    +         + 
Sbjct: 174 EVASVGGFVKQYNIVVDPQKLRAQGISLDKLRSAVRASNMDVGGRTVELSEFEFVVRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                      +   + GA             P        
Sbjct: 234 YLRGIEDIE-------------------NIVLKTDAGAPLRLRDVARVELGPDERRGITE 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    I+      + + +        +           +   
Sbjct: 275 LNGDGEVVSGIALQRFGANALTVIDNVKARLSEIASSLPKGVEIVTVYDRSELIKAAIET 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            KGT    + +V +V F+ +L+ +  LVA   + + +++  A +  +G    + S+ GI 
Sbjct: 335 LKGTLLEESIIVALVCFVFLLHLRSALVAILMLPVGILMAFAAMKFMGLGANIMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + +G  +D+ I++ E   +              L    S     +F S +   ++ + +F
Sbjct: 395 IAVGAMIDAAIVMIENAHKHLERAEPGTPRTQILIDAASEVGPALFFSLLVITVSFLPIF 454

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   S+  +   +I++V A+M+  +R + +             + 
Sbjct: 455 TLEAQEGRMFGPLAYTKTFSMAAAALLSITLVPALMVVFVRGRIIPEHKNPVNRFLIWVY 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    + A+   + ++++    ++      G  +  +   G  + +   
Sbjct: 515 RPVIRWVLNAKTLTIMLALVALAITVWPARQLGSEFMPNLNEGTLMYMPTT 565



 Score = 44.7 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 57/165 (34%), Gaps = 27/165 (16%)

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           +R  +V ++   + + I +      +  LGA                      N+ ++  
Sbjct: 357 LRSALVAIL--MLPVGILMAFAAMKFMGLGA----------------------NIMSLGG 392

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  ++  +V+ +   K+++          ++  + +E      ++ +   +S LP
Sbjct: 393 IAIAVGAMIDAAIVMIENAHKHLERAEPGTPRTQILIDAASEVGPALFFSLLVITVSFLP 452

Query: 786 MAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +          F   A    F +  AA  SI +   +++     R
Sbjct: 453 IFTLEAQEGRMFGPLAYTKTFSMAAAALLSITLVPALMVVFVRGR 497


>gi|148360626|ref|YP_001251833.1| multidrug resistance protein [Legionella pneumophila str. Corby]
 gi|148282399|gb|ABQ56487.1| multidrug resistance protein [Legionella pneumophila str. Corby]
          Length = 968

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 63/455 (13%), Positives = 146/455 (32%), Gaps = 25/455 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + + GF+    +   +  +       S +Q  + ITL+   +   +     V   +Q  
Sbjct: 9   AELIAGFITTPLESAVASAEGIDYMTSSSQQGLSTITLNIKLNFDPQIAFTDVMSKVQQT 68

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L  + ++ +++  ++   +++    +   +     + +    R    Q+   +   +
Sbjct: 69  LNQLPKESQQPVILKKSDSSTALMYISLDSKDMTPQ--QITDYATRVVQPQLQTVDGVAK 126

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++  L  T A +S      N           ++  +   +  
Sbjct: 127 ADILGGQTYSMRIFMDPIKMAALNVTPADVSSVLASNNFLTAAGSTKSEYVAINVTAKTD 186

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + +  E                       +                 +            
Sbjct: 187 LNNVGEFE--------------------RLIVKSDKGSIIRLRDIAKVELGSQNYDSSVT 226

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +        +     +    I  A  L   +     P     +          S    
Sbjct: 227 FNSKKAVFISITPTPTANPLTVINDARKLFPSIVREFPPSLTGTIVYDATAFIRASIHEV 286

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    A +V+IV+F+ +   +  L+   +I L+++    L+ +LG ++ L ++   VL
Sbjct: 287 METIIEAAVIVIIVIFLFLGSVRSVLIPVVTIPLSLVGVCTLMLILGYSINLLTLLAFVL 346

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
            IGL VD  I+V E +     + ++ F S  +G     + +    IT       + F   
Sbjct: 347 AIGLVVDDAIVVVENVHRHLEEGKTPFESAIIGAREIATPVIAMTITLAAVYAPIGFMSG 406

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   + FA T+  +++IS   A+++   M   I
Sbjct: 407 LTGALFKEFAFTLASAVIISGVIALTLSPMMCSKI 441



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 84/243 (34%), Gaps = 11/243 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V +  E  Q    +             +            + +  ++ + +  
Sbjct: 720 TMVPLSTVITPTEKTQPNAATHFQQLNSATIQAVMMPGKTLGQGLEFLQKAAQEVLPKGF 779

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                  +     + S  +        + + I + + +  +++ +   L  + ++ + I 
Sbjct: 780 TYDYGGQSRQFMQEGSALIF-----AFLFAIIVIFLVLAAQYESFRDPLIVLISVPMSIC 834

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             L    L     N+     ++TLIG      +++ D    N      ++  R  ++++ 
Sbjct: 835 GALIPLNLGAATINIYTQVGLITLIGLISKHGILIVD--FANHLQREKNLDKRAAVEEAA 892

Query: 766 NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              L   + T+ A    V+P+ +    G +      + ++ G+++    ++F+   +  +
Sbjct: 893 GIRLRPILMTTAAMVFGVIPLLIASGAGAASRFDIGLVISTGLLIGTCFTLFVVPTLYTY 952

Query: 823 IYD 825
           + +
Sbjct: 953 LAE 955



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/136 (13%), Positives = 47/136 (34%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    L  + T+ L +        + G   NL  + A +  IG  V+D +VV + +
Sbjct: 303 LFLGSVRSVLIPVVTIPLSLVGVCTLMLILGYSINLLTLLAFVLAIGLVVDDAIVVVENV 362

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +      +  +       E     +  ++       P+       G++   FA  +
Sbjct: 363 H---RHLEEGKTPFESAIIGAREIATPVIAMTITLAAVYAPIGFMSGLTGALFKEFAFTL 419

Query: 802 AFGIVVAASSSIFIAA 817
           A  ++++   ++ ++ 
Sbjct: 420 ASAVIISGVIALTLSP 435


>gi|257463735|ref|ZP_05628124.1| acriflavin resistance protein B [Fusobacterium sp. D12]
 gi|317061279|ref|ZP_07925764.1| acriflavin resistance protein B [Fusobacterium sp. D12]
 gi|313686955|gb|EFS23790.1| acriflavin resistance protein B [Fusobacterium sp. D12]
          Length = 1016

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 76/676 (11%), Positives = 182/676 (26%), Gaps = 47/676 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +  IG++  L            P+                        
Sbjct: 9   RRPVATSMMVISVIFIGIITMLSMRTELLPNMEIPTVT--------------IRSSWSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    + +   ++       +     + I + F      +    ++   +  
Sbjct: 55  VAEDVETQITKKIEAILPNVEGIDKIESTSSYGTSNIVVKFNFGVDADQKVTEIQREVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    +         ++ +             E +  +      +        
Sbjct: 115 ILNDLPADATNPVAKKIQAGAGTLSMVVMMSAPNK---AELTTFVDEYLKPKFESLPGAA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         QL  + D  +L     +  ++                          N  
Sbjct: 172 QVDVYGNPEKQLQIQVDSEKLAAYNLSPVELYSLISSS-------------------NTI 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L    +      L                 I                 +        +  
Sbjct: 213 LPIGTLRTGTKQLVVRYMGEMKSIEDFENMII--NSNGNVLRLKDVAKVVLTREDASNMG 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            ++       +       S    IE A +    L +         +          S S 
Sbjct: 271 YISGEEAITILLQKSTDGSTVDLIEKAKVALQELESIMPKGTKYNIIMDTSIDIKSSISG 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L  IVLF+ +   +   +   ++ ++VI T A L   G TL L S+ G+ 
Sbjct: 331 VSFNAIQGLILATIVLFLFLRNVRATFLITLALPISVIFTFAFLKATGTTLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSV-FCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +G+G+  D++++V + I        S    + + G +   ++IF S +T ++  + + F 
Sbjct: 391 IGVGMLTDNSVVVIDNIYRHITDLHSPVIEASENGSTEVSASIFASALTTMLVFIPILFI 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R  A  +  S + ++  A++++  +   ++  +   S D     +       
Sbjct: 451 PGFAREIFRDMAYAIIFSNVAALIVALTLIPMLASKLMSNEIRISSDGKIFHKIREKYLK 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGVLANRPVDLSVVRS 596
           +    +  R   + I++     SI +      N      +G   +       +DL     
Sbjct: 511 LIRYALFHRKLTIFITLGIFAFSIFISGFLKFNFMPKQDQGRYSITAELPNGLDLEKSDK 570

Query: 597 NLES----LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             +     ++    +   F    +  V +    G    ++  +  +  K+  +V      
Sbjct: 571 IAKQIEAFVKEEPNTKTYFIIVGSNSVNVNVDIGKKDTRSTSVFDIIDKMRPLVSKIPDT 630

Query: 653 NTEIVGPKISRELIRK 668
              +        + R 
Sbjct: 631 RVSLKEDFGMGSIRRD 646



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 79/216 (36%), Gaps = 7/216 (3%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                       + +    + +   K   +   L  I  T     +     + +    ++
Sbjct: 786 DRIYSVTISANDNGLGTRGLQQAFVKAFQKFNRLDAISYTWGGQSENMNATMSQLSSALM 845

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I+   +   I  +F+ +      I ++ L +        + G   N+  +  ++ L G  
Sbjct: 846 IAIFLIYALIAAQFESFLLPFVVIGSIPLALIGVFLGLFILGQAMNMMTMIGIILLAGIV 905

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
           VN+ +V+ D +     +    +S    I ++ +  L   + T+    + ++PMA+    G
Sbjct: 906 VNNAIVLIDFI---QLMRIRGMSREQAIIEAGSTRLRPILMTTATTVLGMVPMALGFGEG 962

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             +    ++ + FG+ V+   ++ +   +   + D+
Sbjct: 963 SEIYRGMSLAVIFGLSVSTLLTLVVIPILYSLMDDF 998



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/238 (9%), Positives = 70/238 (29%), Gaps = 9/238 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V +  L      ++ + + +     L++            +    +++  + +   +  
Sbjct: 255 DVAKVVLTREDASNMGYISGEEAITILLQKSTDGSTVDLIEKAKVALQELESIMPKGTKY 314

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    I   +       +    +A ++                 L + +  T  F 
Sbjct: 315 NIIMDTSIDIKSSISGVSFNAIQGLILATIVLFLFLRNVRATFLITLALPISVIFTFAFL 374

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   NL ++  +   +G   ++ VVV D +     +        +  +    E    
Sbjct: 375 KATGTTLNLISLMGLSIGVGMLTDNSVVVIDNI--YRHITDLHSPVIEASENGSTEVSAS 432

Query: 772 SVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +++   +  +P+    G    +    A      I+ +  +++ +A  ++  +   
Sbjct: 433 IFASALTTMLVFIPILFIPGFAREIFRDMAYA----IIFSNVAALIVALTLIPMLASK 486


>gi|323698553|ref|ZP_08110465.1| acriflavin resistance protein [Desulfovibrio sp. ND132]
 gi|323458485|gb|EGB14350.1| acriflavin resistance protein [Desulfovibrio desulfuricans ND132]
          Length = 1056

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 68/530 (12%), Positives = 154/530 (29%), Gaps = 41/530 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    +++   ++   G++  +      S     P        +                
Sbjct: 9   RKPVAVLVGVILVVMFGVVALMGLPYQLSPNVTEPVITVTTTWT--------------GA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +++   +        S    ++++TL F      +    +V+  L  
Sbjct: 55  TPYEMERDVIEEQEKVLKGIPGLIQMESSNYNARSELTLKFEIGTEIDKALLRVSNKLDE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIV-LSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           V  +   D  + ++  T      ++ L+   +                     I   E  
Sbjct: 115 V-PEYPDDVDRPIISATGASTSPVIWLTMETLPGNDRDVTTYQTFFENDVRQYIERVEGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      ++    DP +L     T  ++       N S      GV          
Sbjct: 174 ADLFVGGGREDEMDIIVDPVKLASYNLTATELINVLRSENVSVSAGTLGVGRRDYRIRTP 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              +   +I  + ++                      G  R        + +        
Sbjct: 234 AEFKTPEDIESVVIS--------------------SSGQYRVTLGDVATVERGNEKPTVA 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR--AGSLPIKLNIVEERNVGADLGS 358
                          +  I+     +    +   L     +                 G+
Sbjct: 274 MRHNGKTGMVVGIRPEPGINVLTMTDRVYKVIEDLNDGPLAEQGVRFNWIYDQRPYINGA 333

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
             + K    I + L ++VLF+ +      ++   SI ++++    + +  G +L + S+A
Sbjct: 334 IDLVKRNILIGSILAIVVLFVFLQSVSSTIIVAVSIPVSIVGAFIMFAAAGRSLNIVSMA 393

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GI   +G+ VD+ I+V E +    R  +S F +   G S  +  +  S +T +   + + 
Sbjct: 394 GISFAVGMLVDNAIVVLENVDRHRRMGKSPFHAAYDGASEVWGAVLASTLTTVAVFLPVV 453

Query: 479 FF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           F     G   +  AI +  +I +SMF +I ++  +     R    K    
Sbjct: 454 FMEQEAGQLFKDIAIAVTCAIALSMFVSILVIPMLANQFYRIADNKKRRR 503



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 80/275 (29%), Gaps = 11/275 (4%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
               T      +      Q  V       +             +       G       +
Sbjct: 234 AEFKTPEDIESVVISSSGQYRVTLGDVATVERGNEKPTVAMRHNGKTGMVVG-IRPEPGI 292

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                       + ++    + E          +      + +L+++ I  +I S +A++
Sbjct: 293 NVLTMTDRVYKVIEDLNDGPLAEQGVRFNWIYDQRPYINGAIDLVKRNI--LIGSILAIV 350

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +           +    ++ + I      FA  G   N+ ++A +   +G  V++ +VV 
Sbjct: 351 VLFVFLQSVSSTIIVAVSIPVSIVGAFIMFAAAGRSLNIVSMAGISFAVGMLVDNAIVVL 410

Query: 742 DRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
               +N+  +     S         +E  G  + +++      LP+       G +    
Sbjct: 411 ----ENVDRHRRMGKSPFHAAYDGASEVWGAVLASTLTTVAVFLPVVFMEQEAGQLFKDI 466

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           AI +   I ++   SI +   +    Y       R
Sbjct: 467 AIAVTCAIALSMFVSILVIPMLANQFYRIADNKKR 501



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 88/253 (34%), Gaps = 17/253 (6%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V LS + S   +  +  I            V          A   + + +  K+T+   +
Sbjct: 802  VPLSSLSSMENTYGVTQIRHLERRRTITLQVTPPVDMPLQSAMEVIEQQLLPKVTQAGLM 861

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
              +                      I++ I   + +   F+ + + L  I    + +   
Sbjct: 862  HGVTVRLSGAADKLTVTRDALKWNFILALIITYLLMSALFENFIYPL--IIMFTVPLAGA 919

Query: 708  LGFFALFGIE--------FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
             GF  L  +E         ++  +   + LIG  VN+ +++  +   N++     + +++
Sbjct: 920  GGFLGL-RLENLLIAPQALDILTMLGFVILIGVVVNNAILIVHQSLGNVRE--RGMDYKE 976

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +  +    L     ++  +   +LP+AV    G  +       +  G+ ++   ++F+ 
Sbjct: 977  AVLDATRTRLRPIYMSATTSVFGMLPLAVAPGPGSELYRGLGAVVLGGLALSTVFTVFVI 1036

Query: 817  APILLFIYDWRAK 829
              +L+F+     K
Sbjct: 1037 PALLMFVIPMERK 1049


>gi|229917655|ref|YP_002886301.1| acriflavin resistance protein [Exiguobacterium sp. AT1b]
 gi|229469084|gb|ACQ70856.1| acriflavin resistance protein [Exiguobacterium sp. AT1b]
          Length = 1050

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 77/672 (11%), Positives = 180/672 (26%), Gaps = 44/672 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN + V L ++I     L A         L+  P                    +     
Sbjct: 10  NNKFAVWLMTIILTAAGLFAGLT----MKLETLPDITTPTV---------SVTTIYPGAS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++    L        S  Q  + I + +  S   +    +V   L  V
Sbjct: 57  PEQVLEEVSTVLEDRLQNLNGVEQVRSSSFQNASNIQIDYDFSTDMDEAEQQVKDALSNV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    ++  +   +     ++     I        E +  +  +    +   E    
Sbjct: 117 --ELPESAQEPQVSRLSFDAFPVI--GAAISDESLDLAELTKLVEEEVQPALEGVEGAQT 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              + + + ++  + D   L +   T   +       +      ++ +     +      
Sbjct: 173 VQIAGQEIRRVELQFDQEALAEYNLTEDTVKQLIQANDARIALGLYELGDTEQAVVIDGK 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            E       I +  + A   P T     ++   +         T      P  V      
Sbjct: 233 SETLEAFRDIQIPYSPAQSTPTTPSAPTELPPSQTPDVPTEVPTETPSALPPNVPTTVPT 292

Query: 303 L--------------------TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
           +                              +     +    +     +     A +   
Sbjct: 293 VALSELATIEDKGIEESISRSNGERSIGVQVTKTQDANTVDVVNAVKEVLNDFEAENDTA 352

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
            +  +          S         +     ++++ + +   +  ++A  SI L++++ L
Sbjct: 353 NV-SITLDQGQPIEESVETMLSKALLGGLFAILIILVFLRNFRSTIIAVISIPLSLLMAL 411

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRA 459
            +L  L  TL + ++  + + IG  VD +I+V E I     ++         +       
Sbjct: 412 IVLKQLDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRLTRSNEPLRGKELIIAATKEV 471

Query: 460 YSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           +  I  S I  +   + L F     G     FA+T+  ++L S+  AI++V  M     +
Sbjct: 472 FIPIASSTIVTIAVFLPLGFVTGFVGELFLPFALTVVFALLASLLVAITVVPMMADSFFK 531

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
            +     +  P          +              + L       +          D +
Sbjct: 532 NRDKLKPEEGPGKLAEWYRGVLNWSLNHKLVVFGLATALLIGSFALVPAIGVNFLNQDSE 591

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
             + +         L    +  E  +   +  Q    +  F V  +        +  +  
Sbjct: 592 KTLFVTFDPEPGQTLEDSIAAAEVAEEYFMEEQPNATDVQFTVGGENPLNPGNNKQGIFI 651

Query: 637 MVKKKITEIVPL 648
           +     TE    
Sbjct: 652 VQYDPDTEDFAD 663



 Score = 87.8 bits (215), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 89/252 (35%), Gaps = 3/252 (1%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V    P       + +E   I +   ++       +   + Q  ++V     ++ V    
Sbjct: 286 VPTTVPTVALSELATIEDKGIEESISRSNGERSIGVQVTKTQDANTVDVVNAVKEVLNDF 345

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                 + +  T   G  I   +       ++    A+LI +     +   + A+ ++ L
Sbjct: 346 EAENDTANVSITLDQGQPIEESVETMLSKALLGGLFAILIILVFLRNFRSTIIAVISIPL 405

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   L       I  N+  + A+   IG  V+D +VV + + + +      +  ++LI 
Sbjct: 406 SLLMALIVLKQLDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRLTRSNEPLRGKELII 465

Query: 763 KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +  E       +++      LP+     + G +   FA+ + F ++ +   +I +   +
Sbjct: 466 AATKEVFIPIASSTIVTIAVFLPLGFVTGFVGELFLPFALTVVFALLASLLVAITVVPMM 525

Query: 820 LLFIYDWRAKNA 831
               +  R K  
Sbjct: 526 ADSFFKNRDKLK 537



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 103/296 (34%), Gaps = 14/296 (4%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
                 IS   +  S     T             Q+   +   +    + +      I D 
Sbjct: 757  QIAQVISQFQAPESPLTSVTVDDKQLDVVIPNEQVTYDSVDDLQAQEITTPFGPRPISDF 816

Query: 607  SFQNFDGEKNFLVR-------LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                     + LV               +   T     +++++++I   S +        
Sbjct: 817  IEIEEGTTPDTLVERDGKLLAQVSVELSTDKATEASAAIEERVSDIELPSGVSYDVGGVT 876

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF 718
            +  +E   +  + ++ +   + + + I F         + +L   I   L    + G   
Sbjct: 877  EQIQESFTQLGLAMLAAIAIVYLVLVITFGGALTPFVVLFSLPYAIIGGLVALLITGETI 936

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            +++A+   L LIG  V + +V+ DR+   +      +S R+ + ++    L   + T++A
Sbjct: 937  SVSALIGALMLIGIVVTNAIVLIDRV---IHKEEAGLSTREALLEAAGTRLRPILMTALA 993

Query: 779  AFISVLPMAVW--GGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               ++ P+A+   GG++I     + +  G+  +   ++ I   +  F   +R K  
Sbjct: 994  TIGALAPLALGLEGGALISKGLGVTVIGGLTSSTLLTLLIVPIVYEFFARFRKKKQ 1049


>gi|323691436|ref|ZP_08105708.1| cation/multidrug efflux pump [Clostridium symbiosum WAL-14673]
 gi|323504482|gb|EGB20272.1| cation/multidrug efflux pump [Clostridium symbiosum WAL-14673]
          Length = 1015

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 68/619 (10%), Positives = 173/619 (27%), Gaps = 45/619 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V+    +   G+     + L  +     P  +                 V   
Sbjct: 8   LKRPVTTVLAVLCLIVFGISSIFSSKLELTPEMEMPMVV--------------VFTVYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V+  +    ++    L           +  + + L +      +     +     
Sbjct: 54  ANPEDVDELVTKPIEDEIGTLNGIKSVNSYSNENMSMVLLQYEYGTDMDKAYSDLKKKTD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S L  D +   ++     + + +            A      +  + + ++    S 
Sbjct: 114 AMQSSLPDDVQTPTIMEFNINDQATMYLAV----NNEKADNLYNYVDEKIVPELEKISSV 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  E  P +L+Q   +   +       N +       V          
Sbjct: 170 ASVDISGGREEYIRVEVIPEKLKQYHLSMNSLVTAVASANLAYPAGSTEV---------- 219

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G      T   +    + +  I          +     N+   L      
Sbjct: 220 ----------GSQSLSVTTGVEFDDMESLKRIPITVGNGNTIYLEDVANVYSTLKDAAGI 269

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          + + S     +      + L   +  +++ +    N     GS  
Sbjct: 270 GRYNGQDTVALGIKKQQKSSAMDVSKAVNRTISRLTEVNPDLQIVV-VNDNSDQINGSLI 328

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      + ++V+F+     K  L+   SI ++++  L ++ ++G +L + ++  +
Sbjct: 329 SVLQTMIAAIIVSMVVIFLFFGDLKASLIVGTSIPVSILAALVMMRVMGFSLNVITLGSL 388

Query: 421 VLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           VLG+G+ VD++I+V E      +         +   G S    +I  S  T  +  + L 
Sbjct: 389 VLGVGMMVDNSIVVLESCFRSTKGKGFNEFHKAALEGSSIVIQSIIGSTATTCVVFLPLA 448

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-KKMKSIDINPLSRFFLI 534
           F     G   +    T+   ++ S+ +A++IV    +      +    +           
Sbjct: 449 FLSGMTGQMFKPLGFTIVFCMVASLISAMTIVPLCYMMYRPKERTTAPLSGLVTKMQNGY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +     + +        L  I               + +G I + V     + +   
Sbjct: 509 RGIMKSLLPKKKTVMFSTVALLVISLFLATQLKTELMPANDQGTISITVGLRPGLGIEKA 568

Query: 595 RSNLESLQIGDISFQNFDG 613
              L  ++    + ++ + 
Sbjct: 569 NEILSEVEDYVANDEDVES 587



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 100/286 (34%), Gaps = 5/286 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
                            + T      ++    I + V     + L  V +   +L+    
Sbjct: 209 NLAYPAGSTEVGSQSLSVTTGVEFDDMESLKRIPITVGNGNTIYLEDVANVYSTLKDAAG 268

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +    +   L   + Q   ++  ++ +     ++TE+ P   I        +I+  LI
Sbjct: 269 IGRYNGQDTVALGIKKQQKSSAMDVSKAVNRTISRLTEVNPDLQIVVVNDNSDQINGSLI 328

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                 +    ++M++          +L   T++ + I   L    + G   N+  + ++
Sbjct: 329 SVLQTMIAAIIVSMVVIFLFFGDLKASLIVGTSIPVSILAALVMMRVMGFSLNVITLGSL 388

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  +G  V++ +VV +   ++ K    +  F     +  +  +   + ++    +  LP+
Sbjct: 389 VLGVGMMVDNSIVVLESCFRSTKGKGFNE-FHKAALEGSSIVIQSIIGSTATTCVVFLPL 447

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           A      G +       + F +V +  S++ I  P+   +Y  + +
Sbjct: 448 AFLSGMTGQMFKPLGFTIVFCMVASLISAMTIV-PLCYMMYRPKER 492



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/225 (12%), Positives = 85/225 (37%), Gaps = 11/225 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           ++ +     SV  +++  +   D        +K + V +       +A+     +     
Sbjct: 761 IVLDTATGGSVALTDIADIYFKDSPQNIVRADKEYQVTITGDFVKGIAKDDQDAIETTIY 820

Query: 643 TEIVPLSTIQNTEIVGPKISRELIR---KGIVGVIISAIAMLIYIWIRFKW-YFALGAIT 698
            E V  +  ++       +   +          + ++   + + +  +F+   F++  +T
Sbjct: 821 KEAVLPNMSESITRAQNSMDEAMAEEFGALAGAIGLAVFLIFVVMAAQFESPKFSIMVMT 880

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+   +  + G   L     ++ ++   L L+G  VN+ ++  D        Y +++   
Sbjct: 881 TIPFSLIGSFGLMFLADATISMPSLLGFLMLVGTVVNNGILYVD----TANQYRSNMDRD 936

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
             + ++    L   + T++   ++++PMA+     G ++   A+ 
Sbjct: 937 TALIEAGATRLRPILMTTLTTIVAMIPMALGIGDSGEMMQGMALV 981


>gi|331269246|ref|YP_004395738.1| protein-export membrane protein SecD [Clostridium botulinum
           BKT015925]
 gi|329125796|gb|AEB75741.1| protein-export membrane protein SecD [Clostridium botulinum
           BKT015925]
          Length = 423

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 93/254 (36%), Gaps = 8/254 (3%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           Y    +  I L +  +     +         +I            N    +         
Sbjct: 152 YDETQRPTISLELKPDGAKKFAEATQKFLGKRITIYMDGEVLTSPNVQSVITGGKATITG 211

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWI 686
            + + E  ++          +    +    +   L    +        I    +LI++ +
Sbjct: 212 SSTMEEANRQAKIIESGALPVSLEAVEFKTVGATLGANALPLSMKAGAIGIGFILIFMLL 271

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            +K    + A   LI  +   LG F +F +   L+ +A  L  +G +V+  V++++R+++
Sbjct: 272 YYK-GPGIMADIALIFYVIIVLGAFVVFKVTLTLSGIAGFLLTVGMAVDANVLIFERIKE 330

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++L     S    +D   N  L   + +++   I+ + +   G   +  FA+ +  GIV
Sbjct: 331 ELRL---GKSLNVAVDAGFNRALSSILDSNITTIIAGVVLYYLGSGGVKGFALTLMIGIV 387

Query: 807 VAASSSIFIAAPIL 820
           ++  +++ +   ++
Sbjct: 388 LSIFTALTVTRTLI 401



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 125/368 (33%), Positives = 215/368 (58%), Gaps = 27/368 (7%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +     V +  IE+++E++  R++  G+ E+++QR G +RI I++PGE D  ++ + 
Sbjct: 63  VLEEIKGKDVKNETIERTIELLSMRVNPEGVKETSVQREGKNRIRIEIPGEFDSKKVLES 122

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T K+ F                               KV ++G  +      +  +T
Sbjct: 123 IGKTGKLEFKGPDN--------------------------KVILTGSDV-NKATAYYDET 155

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +P + +     GA++F E T+  +GK + + +DG VLT+P +   I  GKA I+G+ T+
Sbjct: 156 QRPTISLELKPDGAKKFAEATQKFLGKRITIYMDGEVLTSPNVQSVITGGKATITGSSTM 215

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A ++ +G+LP+ L  VE + VGA LG++++     A   G+  I++FM++ Y  
Sbjct: 216 EEANRQAKIIESGALPVSLEAVEFKTVGATLGANALPLSMKAGAIGIGFILIFMLLYYKG 275

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++AD ++   VI+ L    +   TLTL  IAG +L +G+AVD+N+L+ ERI+EE R  
Sbjct: 276 PGIMADIALIFYVIIVLGAFVVFKVTLTLSGIAGFLLTVGMAVDANVLIFERIKEELRLG 335

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  ++D GF+RA S+I DSNIT +IA VVL++ G G V+GFA+T+ + I++S+FTA++
Sbjct: 336 KSLNVAVDAGFNRALSSILDSNITTIIAGVVLYYLGSGGVKGFALTLMIGIVLSIFTALT 395

Query: 506 IVRAMMIF 513
           + R ++  
Sbjct: 396 VTRTLIKL 403



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 56/409 (13%), Positives = 120/409 (29%), Gaps = 23/409 (5%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
             L+ +      ++A   F     +  +        I+ GLDL+GG  ++ E+   D  N
Sbjct: 15  TALFILAVLAIGILAYSGFFGIKNIFGYRVKSFSESINKGLDLQGGISVLEEIKGKDVKN 74

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKL 126
             ++   + L   +  EG+   S+++   N+I +        + + + +    +      
Sbjct: 75  ETIERTIELLSMRVNPEGVKETSVQREGKNRIRIEIPGEFDSKKVLESIGKTGKLEF--- 131

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                        + ++ +  S  N         ++    +  + D         Q+   
Sbjct: 132 ----------KGPDNKVILTGSDVNKATAYYDETQRPTISLELKPDGAKKFAEATQKFLG 181

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
            RI I + GE   S   Q + T  K +                +         + +    
Sbjct: 182 KRITIYMDGEVLTSPNVQSVITGGKATITGSSTMEEANRQAKIIESGALPVSLEAVEFKT 241

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           V   G  L         K     +      M           +I     V++        
Sbjct: 242 V---GATLGANALPLSMKAGAIGIGFILIFMLLYYKGPGIMADIALIFYVIIVLGAFVVF 298

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   +      +        A +L        L +  ++    + G +    SI     
Sbjct: 299 KVTLTLSGIAGFLLTVGMAVDANVLIFERIKEELRLGKSLNVAVDAGFNRALSSILDSNI 358

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +   V+      + Y   G V  F++ L + + L++ + L  T TL 
Sbjct: 359 TTIIAGVV------LYYLGSGGVKGFALTLMIGIVLSIFTALTVTRTLI 401


>gi|71735875|ref|YP_274833.1| multidrug RND efflux transporter, permease MdtC [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71556428|gb|AAZ35639.1| multidrug RND efflux transporter, permease protein MdtC
           [Pseudomonas syringae pv. phaseolicola 1448A]
          Length = 1035

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 66/564 (11%), Positives = 158/564 (28%), Gaps = 39/564 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FRLLPVAPLPNMDFPVIV---------VSASLAGASPEVMASTVATPLERSLGSIAGVNT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  Q   +I L F  +R     A +V   +    + L    +            + +
Sbjct: 80  MTSNSSQGTTRIILQFDLNRDINGAAREVQAAINASRNLLPSGMRSMPTYKKVNPSQAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   ++   +    +            +       +       L  +  E +P  L Q  
Sbjct: 140 MV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGEVQIGGSSLPAVRIELEPQMLSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N  +                   +E   +                  
Sbjct: 199 VSLDDVRTAITGANVRRPKGFVEDDQHNWQVQANDQLETAKD------------------ 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                 +   +    +            + + +A  +   T+ 
Sbjct: 241 --YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIETVA 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA         V          +    + T  I   LV++V+F+ +   + 
Sbjct: 299 QIKAQLPALRAVLPASVSLNVAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ ++++ T A++ LLG +L   S+  ++L  GL VD  I+V E I        
Sbjct: 359 SLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENISRHIHNGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTA 503
               +  +G      T+   N++ +   + + F GG      R F+IT+ +SI++S+  +
Sbjct: 419 DPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSIVVSLIVS 478

Query: 504 ISIVRAMMIFIIRY------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +++   +    ++          +        R     D      MR R   +   ++  
Sbjct: 479 LTLTPMLCARWLKPHDSGKDNAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLLSLLITV 538

Query: 558 ICSICLLFTHGLNYGIDFKGGIQL 581
           + ++ L       +      G  +
Sbjct: 539 VVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 50/140 (35%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     L G   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLLGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 98/271 (36%), Gaps = 6/271 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
               +N            V         V  S++   +    + +     +     + +  
Sbjct: 753  VMEVNPKYAQDPATLEQVQVITADGQRVPLSSIAHYERSLANDRVSHDGQFAAENISFDL 812

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + V+  +    +++ I  I   S I +             +     ++ + +A+ + + 
Sbjct: 813  AEGVSLDKATVAIERAIAAIGLPSDIISKMAGTANAFASTQKSQPWMILGALLAVYLVLG 872

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            I ++ +   L  ++TL       L    + G EF+L ++  +  LIG    + +++ D  
Sbjct: 873  ILYESYIHPLTILSTLPSAGVGALLTIYVLGSEFSLISLLGLFLLIGVVKKNAIMMID-- 930

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
                      ++ ++ I  +  + L   + T+MAA +  LP+ +    G  +     + +
Sbjct: 931  LALHLERDQGMTPQESIRSACLQRLRPILMTTMAAILGALPLLLSTAEGAEMRKPLGLTI 990

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G++ +   +++    + L++   R +  +
Sbjct: 991  IGGLIFSQVLTLYTTPVVYLYLDRLRHRYNK 1021


>gi|256423783|ref|YP_003124436.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
 gi|256038691|gb|ACU62235.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Chitinophaga pinensis DSM 2588]
          Length = 1080

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/490 (12%), Positives = 137/490 (27%), Gaps = 38/490 (7%)

Query: 34  RFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF-LQMYSDELRSFLKK-EGIGVFSM 91
           ++P   P               + ++           +      L   +   E +   + 
Sbjct: 55  QYPEIAPPT-------------VEVKAAFQGANADVVMNSVIVPLEEQINGVENMSYMTS 101

Query: 92  RQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
               +    IT+ F      +  A  V   +    S L  D  +  + T+ ++   + + 
Sbjct: 102 TAGNDGSATITIYFKLGTDPDLAAVNVQNRVSKATSLLPADVIRAGVTTSKKQSSQVFIF 161

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
           +                +    + ++                  +     P  +      
Sbjct: 162 EVCSKNKSYDETFLQNYVNINLMPRLKRVNGVGDAFIYGARDYSMRIWLKPDVMAVHGLM 221

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
            A +       N       FG      +   QY+++ K  +               + + 
Sbjct: 222 PADVLAKLSEQNIEAAPGKFGE---NGAQAFQYVIKYKGRL-------------KTSKEF 265

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
              I       +         +           +           S  +  + +  I   
Sbjct: 266 GDIIIRSSGKGQFLRLNDIAKVEMGSLSYASSTITDGYAATAIAVSQSSGSNAHELISQC 325

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             +             ++           S      T      LV IV+F+ +   +  L
Sbjct: 326 EKIIEESAKEFPEGVYHVPFLNANEFLDASIEKVVHTLIEAFILVFIVVFIFLQDFRSTL 385

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN-QS 447
           +   S+ + +I T   L + G ++ L ++  +VL IG+ VD  I+V E +  +  +   S
Sbjct: 386 IPAISVPVAIIGTFFFLKVFGFSINLLTLFALVLAIGIVVDDAIVVVEAVHAKLDQGATS 445

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAI 504
              +     S   S I    +      V + F     G   + F +T+ ++I+IS   A+
Sbjct: 446 AKKATLHAMSEISSAIVSITLVMAAVFVPVSFISGSAGVFYKQFGLTLAIAIVISAVNAL 505

Query: 505 SIVRAMMIFI 514
           ++  A+    
Sbjct: 506 TLSPALCAIF 515



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 73/199 (36%), Gaps = 16/199 (8%)

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWI---RFKWYFALGA 696
             I E+   +  +        I++E I  G   ++I  +  + +Y  +      +      
Sbjct: 862  AIQEVAAQTLPKQYTYEFSGITKEEISSGSQALLIFLLCLVFVYFLLCAQYESYVLPFAV 921

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            + +L + +     F  +FG++ N+    +++ LIG    + +++ +             S
Sbjct: 922  LLSLPIGLAGAFIFAKIFGVDNNIFLQISLIMLIGLLAKNAILIVE------FALMHRRS 975

Query: 757  FRDLIDKSINETLGR---SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
              DL+  +I     R    + TS A    ++P+ +    G +   S       G+++   
Sbjct: 976  GEDLVRAAITGAGARLRPILMTSFAFIFGLVPLMLASGAGAASNKSIGTAAIGGMLIGTL 1035

Query: 811  SSIFIAAPILLFIYDWRAK 829
              IF+   + +       +
Sbjct: 1036 FGIFVIPILFILFQLLHER 1054



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 90/243 (37%), Gaps = 6/243 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + + L+ +            S          +   Q    ++       E + ++  +  
Sbjct: 277 QFLRLNDIAKVEMGSLSYASSTITDGYAATAIAVSQSSGSNAHELISQCEKIIEESAKEF 336

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P        +   +     I K +  +I + I + I ++I    +   L    ++ + I 
Sbjct: 337 PEGVYHVPFLNANEFLDASIEKVVHTLIEAFILVFIVVFIFLQDFRSTLIPAISVPVAII 396

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T  F  +FG   NL  + A++  IG  V+D +VV + +   +    T  S +     ++
Sbjct: 397 GTFFFLKVFGFSINLLTLFALVLAIGIVVDDAIVVVEAVHAKLDQGAT--SAKKATLHAM 454

Query: 766 NETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +E     V  ++      +P+  + G + +    F + +A  IV++A +++ ++  +   
Sbjct: 455 SEISSAIVSITLVMAAVFVPVSFISGSAGVFYKQFGLTLAIAIVISAVNALTLSPALCAI 514

Query: 823 IYD 825
              
Sbjct: 515 FLK 517


>gi|166712299|ref|ZP_02243506.1| RND superfamily protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 1022

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 84/646 (13%), Positives = 185/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATTDGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V      D  +  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AVRDDFPEDLHRFHVFKWSSSDEPVLKVRLASQTDLTGAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S                         N 
Sbjct: 172 AKVKISGAPPNEVEIAIAPDRLTAHDLSLNDLSERL-------------------GKLNF 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +   +++ +G  +            +    +      A+         +      +  G
Sbjct: 213 SVSAGQIDDNGQRIRVQPIGELRDLQELRELVL----NAKGVRLGDIAEVRLKPMRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +     + A      +RA      + +    N       S 
Sbjct: 269 RRLDGRPAIGLDVYKERSANLVDVSKAALKEVEDIRAQPAMRDVQVKVIDNQGKTVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 AELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPDQPQLAALLGTRSVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     + S            
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTSERGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G D      +            +
Sbjct: 509 AKVLAWTLAHRGWSVAGIILVSAISLVPMTLTKIDMFGGDGGNEAFIQYRWKGSYTREQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +                G +   T     VK 
Sbjct: 569 GDEIGRVENYLEANRAKYHITQIYSWFSEVEGSNTVVTFDASKVKD 614



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 86/237 (36%), Gaps = 11/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI-VPLSTIQNTE 655
            +L  +QI   + Q     +   + ++    + V        ++  +  +  P       +
Sbjct: 768  SLVDVQIRPAATQIGRTNRQTTLTIKANLAEKVTMPEARAAMEAPLKAMRFPAGYSYTFD 827

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E + + +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 828  GGDYQNDGEAMNQMVFNLVIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 887

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +     L    +     + +   E L   + 
Sbjct: 888  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN---NLRRRGMGRTQALVEGSRERLRPIMM 944

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T   A ++++P+          G      A  +A G+  +   S+     I   + D
Sbjct: 945  TMGTAILAMVPISLTSTTMFSDGPPYFPMARAIAGGLAFSTLVSLLFLPTIYAILDD 1001



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +    +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 DVSKAALKEVEDIRAQPAMRDVQVKVIDNQGKTVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPDQPQLA-----ALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|119505480|ref|ZP_01627552.1| AcrB/AcrD/AcrF family protein [marine gamma proteobacterium
           HTCC2080]
 gi|119458589|gb|EAW39692.1| AcrB/AcrD/AcrF family protein [marine gamma proteobacterium
           HTCC2080]
          Length = 1036

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 77/686 (11%), Positives = 198/686 (28%), Gaps = 44/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   +  +G+  A+        + ++P     +            +      
Sbjct: 17  RRPVVSVVLSLAMLLVGVWAAV-----TLPVIQYPVIQSSSL---------EINTFYPGS 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    + + S +        +    ++ + +  A +    +   ++   L  
Sbjct: 63  SAETVRGFITEPIERVASSIPGVNYVESTTSAGRSLVKVWLALNEDSTDALAELNTRLSQ 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L    +   +                       +   +  + R  + ++    +  
Sbjct: 123 IRFELPDGAEDPAIEIVRADSPYASFYLAMSIPEGETSSSITDLMQRDVLPRLTSLPNVQ 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             + S  I   +    D +R+  L  +   +       N          +  R +     
Sbjct: 183 NAINSG-IRPAMRIWVDTARMAALDISAENVQNALRQNNVISTMGRSQNKLQRINLITNT 241

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +                      +I     G           +           
Sbjct: 242 EAKTPEDF--------------------ANILLRAEGNVDIRLGDIAEVVAGSEEQSQLS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +   +           +     +        +           +          S   
Sbjct: 282 RHSMLDVVFIGIYPAPGANEIAVADALYAEVDAINESLREDLEFFIAYDVTRYMRDSLKE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV  V+  ++   +  LV   +I ++++  +A +SL+G +L L +I  IV
Sbjct: 342 IFITLGETIFLVGFVVVALMGSLRTALVPLLTIPISLLGAMAAMSLMGFSLNLLTILAIV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV---LF 478
           L +GL VD  I+V E +    R+  +   +      R  + I    +T  +       L 
Sbjct: 402 LSVGLVVDDAIVVVENVARNLRQGMTRREAALRSSRRLLAPIIAMTLTLAVVYAPIGLLS 461

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI---P 535
              G   + FA T+ +++LIS   A+++   M  ++      ++   + ++R F +    
Sbjct: 462 GLTGVLFKEFAFTLAIAVLISGVVALTLSPIMSAWVCPSHGQETRATHWVNRRFDVTANQ 521

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               + F     W +  + +F       L+   L      +    + V+++   + ++  
Sbjct: 522 YARIVDFSIRYRWQLIFAGIFFSLLSGPLYMLSLKELAPVEDQSGVTVISDAAPEAAIED 581

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQ---YQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
           +     ++           + + + +    Y   D  A     + ++  +  +       
Sbjct: 582 TYQGMNKVVSTMSTFEGATEIWQIIMPSGSYGGQDFTAPGDRSQSIQDMLFSMYGALQEI 641

Query: 653 NTEIVGPKISRELIRKGIVGVIISAI 678
            +    P    +L   G   V ++  
Sbjct: 642 PSLNAFPVADSDLPSAGQFDVEVAIA 667



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 98/268 (36%), Gaps = 8/268 (2%)

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
               L T+      +    I L    N  + L  +   +   +      ++   +  F+ 
Sbjct: 233 QRINLITNTEAKTPEDFANILLRAEGNVDIRLGDIAEVVAGSEEQSQLSRHSMLDVVFIG 292

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                  + +A    L      I E +             +  R+ +++  + +  +   
Sbjct: 293 IYPAPGANEIAVADALYAEVDAINESLREDLEFFIAYDVTRYMRDSLKEIFITLGETIFL 352

Query: 680 M-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           +  + + +      AL  + T+ + +   +   +L G   NL  + A++  +G  V+D +
Sbjct: 353 VGFVVVALMGSLRTALVPLLTIPISLLGAMAAMSLMGFSLNLLTILAIVLSVGLVVDDAI 412

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIG 795
           VV + + +N++     ++ R+   +S    L   +  ++   +   P+ +     G +  
Sbjct: 413 VVVENVARNLRQ---GMTRREAALRSSRRLLAPIIAMTLTLAVVYAPIGLLSGLTGVLFK 469

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFI 823
            FA  +A  ++++   ++   +PI+   
Sbjct: 470 EFAFTLAIAVLISGVVAL-TLSPIMSAW 496



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 57/161 (35%), Gaps = 18/161 (11%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF-NLTAV-----AA 725
            ++ +   +   + I+F  +   L  +       +  L  FA   I F NLT V       
Sbjct: 857  LLAAMALVFFVLAIQFNSFRDPLIILLG-----SIPLALFAALSITFVNLTTVNIYSQVG 911

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++TL G    + +++ +      +     +     I  +    L   + T+ A  +  LP
Sbjct: 912  LITLAGLVAKNAILIVEFAN---QAQREGLDKIAAIRAASVGRLRPVLMTTGATVLGHLP 968

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            + +    G     S    +  G+++    ++ +   I   +
Sbjct: 969  LTLVTGAGAEARNSIGFILVVGMLIGTFFTLVLLPAIYAVL 1009


>gi|77460714|ref|YP_350221.1| multidrug efflux protein [Pseudomonas fluorescens Pf0-1]
 gi|77384717|gb|ABA76230.1| integral membrane component of membrane efflux system [Pseudomonas
           fluorescens Pf0-1]
          Length = 1009

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 72/628 (11%), Positives = 177/628 (28%), Gaps = 52/628 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G          +  L ++P                   + +   
Sbjct: 9   RRPVLATVVSLLIVLLG-----FQAWSKLPLRQYPQMENAL-------------ITVTTA 50

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +     +  +  +         RQ  + I++        + +  ++  
Sbjct: 51  YPGANAETIQGYITQPMQQSLASAEGIDYMTSVSRQNFSVISIYARIGSNSDRLFTELLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               V +KL  D +  +L        +++       ++ +   + +  + R    ++   
Sbjct: 111 KANEVKNKLPQDAEDPVLSKEAADASALMYISFFSKELNN--PQITDYLSRVIQPKLATL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +       +  +    DP +L     + + ++      N           ++  S 
Sbjct: 169 PGMAEAEILGNQVFAMRLWIDPVKLAGFGLSASDVTNAVRQYNFLSAAGEVKGEYVVTSI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                ++                      +    I     G  R        +       
Sbjct: 229 NANTELKSA--------------------EAFGKIPLKVSGDSRVLLSDVARVEMGAENY 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +    I+    +   L A   P   + +          
Sbjct: 269 NSISSFGGTPSVYIGIKATPGANPLDVIKEVRKIMPELEAQLPPNLKSEIAYDATLFIQA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V++V+F+ +   +  ++   +I L++I  +  + ++G ++ L ++
Sbjct: 329 SIDEVVKTLFEAVLIVIVVVFLFLGALRSVVIPVVTIPLSMIGVMFFMQMMGYSINLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E I     + ++   +   G       +    IT       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENIHRHIEEGKTPLEAALEGAREIAMPVVSMTITLAAVYAPI 448

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
            F     G   + FA+T+  +++IS   A+++   M   +             +D    S
Sbjct: 449 GFLTGLTGALFKEFALTLAGAVVISGVVALTLSPMMCAMLLRHDENPTGLAHRLDRIFDS 508

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +           V   I+  +  + L FT       + +G I +   A +P 
Sbjct: 509 LKRRYQRMLHGTLNTRPVVLVFAVIVLCLIPVLLKFTKSELAPDEDQGIIFMMANAPQPT 568

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNF 617
           +L  + +  +        F  +      
Sbjct: 569 NLDYLNTYTDEFIKIFKEFPEYYSSFQI 596



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +  + T+ L +   + F  + G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 LRSVVIPVVTIPLSMIGVMFFMQMMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 +  +   +   E     V  ++       P+       G++   FA+ +A  +V
Sbjct: 412 HIEEGKTPLEAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVV 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++   ++ ++  +   +       
Sbjct: 472 ISGVVALTLSPMMCAMLLRHDENP 495



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 60/156 (38%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  ALALAIIFLVLAAQFESFRDPLVILVTVPLSICGALIPLFLGWSSMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N       ++ R+ ++++    L   + T+ A    ++P+ V    
Sbjct: 911  ISKHGILIVE--FANQLRKDKGLTPREAVEEAAAIRLRPVLMTTAAMVFGMVPLIVATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G          +A G+ +    ++F+   +   +  
Sbjct: 969  GAVSRFDIGTVIATGMSIGTLFTLFVLPCVYTVLAK 1004


>gi|15604045|ref|NP_220560.1| acriflavin resistance protein D [Rickettsia prowazekii str. Madrid
           E]
 gi|3860736|emb|CAA14637.1| ACRIFLAVIN RESISTANCE PROTEIN D (acrD) [Rickettsia prowazekii]
          Length = 1008

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 78/625 (12%), Positives = 172/625 (27%), Gaps = 53/625 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + ++L  MI  +G +     F  +  +   P                   + +E  
Sbjct: 9   KRPIFAIVLSLMIVALGGI-----FFTKLQIRGAPDISVPI-------------INVEAH 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +   +    +++   +K             + ITLSF  S   E   + V  
Sbjct: 51  YAGADALYMEQEITTRIEKVLKTVKNLDYITSQSSTGSSSITLSFRLSTDIELALNDVRS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  ++     D K   +          +      DQ     +E +  +      Q+   
Sbjct: 111 KISDISYMFPQDMKAPSVTKLDTDNFPSLFISIESDQYSD--LELTQIVSDNIQAQLDKL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           ES  +          +  E D  +L Q   +  ++       N      M   +      
Sbjct: 169 ESVGKSQIYGGREYIMRIEPDFKKLYQYKISLLEIEAAIKEQNKDYPAGMIKTKSNNFIV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    E                      +I                 I       
Sbjct: 229 TLTGSLSAPEEFG--------------------NIILKVQNGCIIKLRDITKISLTSPDE 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +++ +              ++A         +          
Sbjct: 269 DIIFRYNGKNSIALGLIKESKANIIDLSNEVTKELERIKASIPKGISISIAYDGAKPLKA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V ++ +   K  L+   +I +++I T +++   G ++ + ++
Sbjct: 329 SIYAVFKTMFEALILVVLVTYLFLASAKISLIPFVTIPVSLIGTFSIMYAFGFSINVFTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I++ E I   N        +  +        I    IT     V +
Sbjct: 389 LAMILAIGLVVDDAIVMLENIFRYNEMGYKPMEAAMLASKEIGFAIITMTITLAAVFVPI 448

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPL 528
            F  G   +    FA T+   +L S F A+++   M   ++        K +        
Sbjct: 449 GFIEGFIGKLFIEFAWTLAFCVLFSGFVAVTLTPMMSSHMVTKHNTNLAKFLVRFHDMLQ 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    + +     + + + I   F +  I    T       +  G +Q+ +     
Sbjct: 509 FVQNRYIYYLKLALDNKKKFVIIILSSFIVLIISFKLTKKTFVPQEDDGFLQVFLKGPEG 568

Query: 589 VDLSVVRSNLESLQIGDISFQNFDG 613
             L      ++  +    ++++  G
Sbjct: 569 ASLESSIKVVKEAEQILANYKDIFG 593



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 84/245 (34%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I L V     + L  +     +    DI F+        L  ++    + +  +  + 
Sbjct: 241 GNIILKVQNGCIIKLRDITKISLTSPDEDIIFRYNGKNSIALGLIKESKANIIDLSNEVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              ++I   +P     +    G K  +  I      +  + I +++           +L 
Sbjct: 301 KELERIKASIPKGISISIAYDGAKPLKASIYAVFKTMFEALILVVLVTYLFLASAKISLI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T      FG   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 361 PFVTIPVSLIGTFSIMYAFGFSINVFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGY 417

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +  ++      +P+     + G +   FA  +AF ++ +   +
Sbjct: 418 KPMEAAMLASKEIGFAIITMTITLAAVFVPIGFIEGFIGKLFIEFAWTLAFCVLFSGFVA 477

Query: 813 IFIAA 817
           + +  
Sbjct: 478 VTLTP 482



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 92/271 (33%), Gaps = 11/271 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             ++ L F       I     I +    N  + L  + +  E + +      N        
Sbjct: 744  YNVILQFNQKDRQDISDLSKILIRTKNNNMLPLESIANIREKISLKSYYHYNNSKSVTIS 803

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              L      + A   + ++  + +     +           ++   +    ++  + S +
Sbjct: 804  SDLAPDVKINDAINIINKIAAQLLDPNNTIIEYIGEIKQMKEVDNNI----LITFVFSLV 859

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  +  +   IT       L G   N+ +   ++TLIG    + 
Sbjct: 860  FIYLVLAAQFESFTDPLLILLAVPFSITGGGLTLWLAGNSLNMYSNIGLITLIGLVTKNA 919

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ +      +L    ++ R+ I +S    L   + T++AA +  LP+      G +  
Sbjct: 920  IMIVEFAN---QLRAKGLNVREAIIESSKLRLRPILMTTVAAIVGALPLVFADGAGAASR 976

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             S    +  G+ +    +IF    I      
Sbjct: 977  NSIGFVIVGGLSIGTIFTIFAIPVIYQTFKK 1007


>gi|298695813|gb|ADI99035.1| Putative antibiotic transport-associated protein [Staphylococcus
           aureus subsp. aureus ED133]
          Length = 829

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 76/592 (12%), Positives = 190/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ N +  +    +       L    +    +
Sbjct: 102 KDDKHIDKVSDPYENKQISKDKTTAFADITYNVSQTSLKDDSRDNIKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYVKGIGLAVGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 87/263 (33%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          +    +
Sbjct: 79  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKVSDPYENKQISKDKTTAFADITYNVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +      + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDDSRDNIKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYVKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKRIKVNK 338


>gi|295839363|ref|ZP_06826296.1| AcrB/AcrD/AcrF family transporter [Streptomyces sp. SPB74]
 gi|197699051|gb|EDY45984.1| AcrB/AcrD/AcrF family transporter [Streptomyces sp. SPB74]
          Length = 1045

 Score =  137 bits (344), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 61/518 (11%), Positives = 156/518 (30%), Gaps = 32/518 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R +     L  ++  + ++      +PQ      P+                  ++   +
Sbjct: 6   RFSLAQRALIGLMSIVAIVFGA-IAIPQLKQQLLPNIELPM-----------VSVIAPYQ 53

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D V   +    ++    +        +  +    +   F      + +   V   +
Sbjct: 54  GASPDVVEKQVVEPLEKSLDAVDGLSTTTSTASEGNAIVMAQFDFGSGTKQLVADVQQAV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  +    ++  +T+   ++VL+  +           S ++ R  + ++   + 
Sbjct: 114 NRARAQLPDNVDPQVVAGSTDDIPTVVLAATSAKDQQ----ALSDQLDRTVVPELKEIDG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q        +Q+    D ++L +   + A +         +     F           
Sbjct: 170 VSQVTIDGVRDLQVTITPDTAKLARAGLSAAALGDALKAGGVTMPAGSFDEG-------- 221

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
               E++    G          D +        S               ++ +  A    
Sbjct: 222 ---GENRTVQVGTPFTSLRQIEDLRVVGQGGQGSGQGEAPEPVRLGDVASVKQQEATATS 278

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                         +     S     +        LR          +          + 
Sbjct: 279 ITRTDGKPSLAVAVTMDKDGSAVGISKAVKDKLGDLRDSLGQGADLKIVVDQGPPVSKAI 338

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S      A+  G  ++V+ + +   +  LV   SI L+V+LTL +L     +L + ++  
Sbjct: 339 SGLTTEGALGLGFAVVVILVFLASIRSTLVTAVSIPLSVLLTLIVLWTRDLSLNMLTLGA 398

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + + IG  VD +I+V E I+      +    ++          +  S +T +   + +  
Sbjct: 399 LTIAIGRVVDDSIVVLENIKRHLGYGEERREAILTAVKEVAGAVTASTLTTVAVFLPIGL 458

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G   G     F++T+  ++L S+  ++++V  +  + 
Sbjct: 459 VGGIVGELFSSFSLTVTTALLASLLVSLTVVPVLSYWF 496



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 71/177 (40%), Gaps = 9/177 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    L  ++  + +   L  + +      K    L  +G +G+  + + +L+++   
Sbjct: 304 SKAVKDKLGDLRDSLGQGADLKIVVDQGPPVSKAISGLTTEGALGLGFAVVVILVFLA-- 361

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    ++ L +  TL       +  N+  + A+   IG  V+D +VV + ++  
Sbjct: 362 -SIRSTLVTAVSIPLSVLLTLIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK-- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
            +        R+ I  ++ E  G    +++      LP+ + G   G +  SF++ +
Sbjct: 419 -RHLGYGEERREAILTAVKEVAGAVTASTLTTVAVFLPIGLVGGIVGELFSSFSLTV 474



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 68/191 (35%), Gaps = 3/191 (1%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L ++ + D        +      +  +P      +   E+ KK     +P         
Sbjct: 788 DLATVGLVDGPVSMTRIDGARAATVTAKPVGDDTGSISTELTKKLDELKLPQGAATEIGG 847

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           V    +  L +  +  +   AI  L+ +         L  + ++    T  LG   + G 
Sbjct: 848 VTADQNDSLGKLALAMLAAVAIVFLLLVGTFRSLIQPLILLVSIPFAATGALGLLLITGT 907

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              + A+  +L LIG  V + +V+ D + +            + + +     L   + T+
Sbjct: 908 PLGVPAMIGMLMLIGIVVTNAIVLIDLINQYR---DRGYGVIEAVTEGGRHRLRPILMTA 964

Query: 777 MAAFISVLPMA 787
           +A   +++PMA
Sbjct: 965 LATIFALIPMA 975


>gi|146340840|ref|YP_001205888.1| multidrug ABC transporter [Bradyrhizobium sp. ORS278]
 gi|146193646|emb|CAL77663.1| Multidrug resistance protein mdtB (Multidrug transporter mdtB)
           [Bradyrhizobium sp. ORS278]
          Length = 1042

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 60/570 (10%), Positives = 141/570 (24%), Gaps = 31/570 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     D +   +    +     +    +   +     ++I+L F   R  +    
Sbjct: 47  VTTQLPGASPDVIASLITAPLERQLGQIPSLSVMNSTSSFGVSQISLQFDLGRDIDGATQ 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +      L                 + V++   +          S         +
Sbjct: 107 DVQAAINAAAGVLPKSLPYPPTYAKVNPADAPVMT-LALTSETISLRAMSDMADTILAQR 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       +      +   +  + D +RL     +   +                     
Sbjct: 166 LSQVSGVGRVSVLGGLKPAVRVQADLARLAAYGISMEDLRAAIA---------------- 209

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
               G                   TAN           I                 I   
Sbjct: 210 ----GANVSGPKGSLDGAQQAYLITANDQIAAADAYKPIIIAYRNGSPVTIGDVATIVDG 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           L     G               +   +    +         L+          +      
Sbjct: 266 LENDRTGGWYQGVPSVILDIQRQPGANVIEVVRQIRAEIPKLQRTIPAGVKLAIVSDRTV 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +   LV +V+ + +   +  ++A  ++ L++I +  ++   G +L 
Sbjct: 326 TIRASVHHVQFTLVLSVVLVTLVVLLFLRSMRATIIAGVALPLSLITSFGVMYFAGFSLD 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +G G  VD  I++ E I       +S   +   G      T+    ++ +  
Sbjct: 386 NLSLMALTIGTGFVVDDAIVMIENIVRHMEDGESAMNASLRGAREIGFTVISLTVSLIAV 445

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSI 523
            + L F     G   R FA+T+ ++++ S   ++++   M   +            + +I
Sbjct: 446 FIPLLFMSGLVGRMFREFALTLTIAVVTSAVVSLTLTPMMCSRLLKHASDEWVLPGLNAI 505

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    +    +     R     V      +      +        +   G I    
Sbjct: 506 SRFIDRTVAVYHRSLLWVLERQTETLVVTFATLAATLALYILAPKGFLPMQDTGSITAVT 565

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            A   V  + +      +     +  +  G
Sbjct: 566 EAGPDVSFTEMSRRQAEISAAIQADPDVIG 595



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSMRATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      S  +   +   E     +  +++     +P+    G V      FA+ +   
Sbjct: 411 VRHMEDGESAMNASLRGAREIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAA 817
           +V +A  S+ +  
Sbjct: 471 VVTSAVVSLTLTP 483



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 67/181 (37%), Gaps = 4/181 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A +  ++ +      I    +I            + +      ++ + I + I + + +
Sbjct: 816 AALSEAVDALHATEARIGMPGSIIGVYSGDAAEFAKSLAGQPWLLLAAVITIYIVLGVLY 875

Query: 689 K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           + +   +  ++TL       +    LFG + ++  +  ++ L+G    + +++ D   + 
Sbjct: 876 ESYIHPITILSTLPSAGVGAILALLLFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALEA 935

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +  +   +  D I ++        + T++AA    LP+A+           P+   I+ 
Sbjct: 936 ERHESR--TPTDAIVQACLLRFRPIMMTTLAALFGALPLAI-ESGTGSELRFPLGISIIG 992

Query: 808 A 808
            
Sbjct: 993 G 993


>gi|15891659|ref|NP_357331.1| AcrB/AcrD/AcrF family protein [Agrobacterium tumefaciens str. C58]
 gi|15160108|gb|AAK90116.1| AcrB/AcrD/AcrF family protein [Agrobacterium tumefaciens str. C58]
          Length = 1046

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 67/610 (10%), Positives = 160/610 (26%), Gaps = 43/610 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL            +   P       I++   L G          
Sbjct: 9   RPVATTLLAIGLVLAGLA-----GFRLLPVAALPKVDFPT-INVSSSLSG--------AS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +     +    +        +     + I L F  +R  +  A  V   +   
Sbjct: 55  PQTMATSVTTPLVKQFETIPGVSEISATNTLGNSSIVLQFDLNRDIDAAAADVQAAISRA 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  +         T    + VL    ++       +            +       Q
Sbjct: 115 QRQLPSNMTTTPSYRKTNPADAPVLL-LAVNSKEMPTSKVDEIAENIISPLLSTISGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP++L+        ++      NN                     
Sbjct: 174 VSIYGAQTYAVRIGLDPTQLQARGLGVDTVTTAITQANNQVPVG---------------- 217

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +        A+           +                N+   +     G  
Sbjct: 218 ----ALQTDNQRLTIEADTQRTNAAAFRSLVVSTNNGAPIHLGDIANVTDSIDNTNAGSW 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++        L+    P     V      A   + S  
Sbjct: 274 FDGEQAIILAVQRQPDANTVEVVDAIKAKLPALQQQLPPSVNIHVMNDASTAIKDAISDV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV+ V+++   +    ++   ++ L++I    ++ +LG ++   S+ G+ L
Sbjct: 334 QFTLFLTIGLVVAVIYLFTGHLTATIIPGLAVPLSLITAFGMMYVLGYSIDNISLLGLTL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +GL VD  I++ E I   + K   +  +   G +    TI   +++ +   + +   GG
Sbjct: 394 SVGLVVDDAIVMLENILRLHEKGLPMREAALQGAAEVSGTILSMSVSLVAVFIPILLMGG 453

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-----KSIDINPLSRFFLI 534
              R    F + + L+I+ S   ++++   +   +  +        +  D        L 
Sbjct: 454 VIGRLFNEFGMVVTLAIMASALVSLTVTPMLASRLSGHSSRPPAIIRWFDAGFERTLRLY 513

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +       R          +             +  +  G + +   A   +  + +
Sbjct: 514 GKAVGWCLSHRRIVLASFLASVAASVYLFETLPSSFFPQEDIGRLSVSTQAREDISYTAM 573

Query: 595 RSNLESLQIG 604
           R     +   
Sbjct: 574 RDLQAQVADQ 583



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/258 (11%), Positives = 90/258 (34%), Gaps = 7/258 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +      P+ L  + +  +S+   +        +   L   +    ++V     ++   
Sbjct: 244 VVSTNNGAPIHLGDIANVTDSIDNTNAGSWFDGEQAIILAVQRQPDANTVEVVDAIKAKL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAIT 698
             + + +P S   +         ++ I      + ++   ++  I          +    
Sbjct: 304 PALQQQLPPSVNIHVMNDASTAIKDAISDVQFTLFLTIGLVVAVIYLFTGHLTATIIPGL 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L +    G   + G   +  ++  +   +G  V+D +V+ + +   ++L+   +  R
Sbjct: 364 AVPLSLITAFGMMYVLGYSIDNISLLGLTLSVGLVVDDAIVMLENI---LRLHEKGLPMR 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFI 815
           +   +   E  G  +  S++     +P+ + GG +      F + +   I+ +A  S+ +
Sbjct: 421 EAALQGAAEVSGTILSMSVSLVAVFIPILLMGGVIGRLFNEFGMVVTLAIMASALVSLTV 480

Query: 816 AAPILLFIYDWRAKNARI 833
              +   +    ++   I
Sbjct: 481 TPMLASRLSGHSSRPPAI 498



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 90/235 (38%), Gaps = 6/235 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            SN  SL             +     + +   D VA +     + +  T I     +  + 
Sbjct: 780  SNFASLTRTQAPVTINQTGQLVSTTISFNLPDGVALSDATSRIDQIKTTIGLPQDVFTSY 839

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                 I ++      V ++ + + + + + + ++ +   L  ++ L       L    + 
Sbjct: 840  GGTAAIFQQSQGNTGVLILAAVLTIYVVLGVLYESFIHPLTILSGLPAAAFGALVALKVM 899

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G++F++ A+  +L LIG    + +++ D   + M+    +      I ++        + 
Sbjct: 900  GMDFSIIALIGLLMLIGIVKKNAIMMIDVAVELMRE--KAEPPAIAIHEACVRRFRPIMM 957

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            T+  A +  LP+A+  G    +     I +  G++V+   ++FI   I + +  +
Sbjct: 958  TTFCALLGALPIALGSGASSELRQPLGIAVVGGLIVSQLLTLFITPVIFVEMDRF 1012


>gi|330982113|gb|EGH80216.1| acriflavin resistance protein [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 914

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/511 (10%), Positives = 148/511 (28%), Gaps = 35/511 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +  +  FP       +             LE    + +   +    ++  + L+      
Sbjct: 31  RLGIQDFPDTDLPAVV---------ISASLEGAAPEQLETEVARKLEDKLTSLRLLKHVT 81

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             + +    I + F   +      ++V   +    ++L  +     +   T    +++  
Sbjct: 82  TKISEGSVLINVIFEIDKDGNEALNEVRNAVDSAAAELPANLDTPSVTRLTTNTTALLTY 141

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
             +  ++   A   S  +  +   Q+       +      +  ++  + DP+ +  L  +
Sbjct: 142 VVDAPRMDEEA--LSWFVDNELSKQLLTVRGVAKISRVGGVDREVQVDLDPTLMAGLGLS 199

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
              ++           G    +   + +      ++D   +  I +              
Sbjct: 200 VTDIANRLRAMQKDNSGGQGDLGSGQQALRVLGGIDDPAALGAIRIPV------------ 247

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                      R         +    A            +           S     +  
Sbjct: 248 --------SDGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSDVGVTKDL 299

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
               +        + +       V   + +             L ++V++  +   +  +
Sbjct: 300 RQAVSEFARQHPDVHIEEAS-NAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATI 358

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   ++ L++I T  ++   G +L   S+  + L IG+ VD  I+  E I    R  ++ 
Sbjct: 359 IVATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENIARHLRMGKTP 418

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAIS 505
             +           +  + +T +   +   F GG +    R F +T   +++ S+  A  
Sbjct: 419 RQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVARL 478

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +   M  ++++ +     D   + R+     
Sbjct: 479 LTPMMAAYLLKARPHGEHDSGLMRRYLGWIH 509



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 6/254 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I++ V   R + +  + +  ++    +               ++      V  T+ L 
Sbjct: 241 GAIRIPVSDGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSDVGVTKDLR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +     P   I+        +         +      +A+L+  W    W   +  
Sbjct: 301 QAVSEFARQHPDVHIEEASNAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATIIV 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L I  T G     G   N  ++ A+  +IG  V+D +V  + +    +      +
Sbjct: 361 ATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENI---ARHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            R    ++ +E     + T++      LP A  GG        F +  +  ++ +   + 
Sbjct: 418 PRQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVAR 477

Query: 814 FIAAPILLFIYDWR 827
            +   +  ++   R
Sbjct: 478 LLTPMMAAYLLKAR 491


>gi|170696456|ref|ZP_02887583.1| acriflavin resistance protein [Burkholderia graminis C4D1M]
 gi|170138661|gb|EDT06862.1| acriflavin resistance protein [Burkholderia graminis C4D1M]
          Length = 870

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 86/624 (13%), Positives = 178/624 (28%), Gaps = 51/624 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRI---SLGLDLRGGSHLVLE 59
                 +L + I  +GL+      L       +P+   +  I   SLG D          
Sbjct: 10  RPVGTALLMAAIMLVGLVALRFLPLSALPQVDYPTIQCRRSIPGASLGRD---------- 59

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D +    +       S   +  I      +  + ITL F      +    +V   +
Sbjct: 60  ----DVIRDCARSSVS---SDRCRRSIRCRRKARRSSIITLQFNLDLPLDIAEQEVQAAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               + L  D     +        + +L+   I        +       +   +I     
Sbjct: 113 NAAGNLLPSDLPAPPIYAKVNPADAPILT-LAITSKTLPLTQVQDLADTRLAQKISQVAG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                 S      +  + +P  L         +       N +     F      D    
Sbjct: 172 VGLVSLSGGQRPAVRIQANPRALAAYGLNLDDLRTTISNLNVNTPKGNF------DGPTR 225

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
            Y +    +++                             R         I +       
Sbjct: 226 NYTINANDQLTDAD--------------AYKSAVVAYKSGRPVMLTDVATIVQGPENTKL 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G  +            +   +    ++    L   L+                     S 
Sbjct: 272 GAWVDGTPAIILNVQRQPGANVIQVVDNIKKLLPQLQQSLPAALEVRTVTDRTTTIRASV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              +   A+   LV++V+++ +      ++   S+ L++I TLA++ L G +L   S+  
Sbjct: 332 RDVQFELAMSVVLVVLVMYLFLANVYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + +  G  VD  I++ E I     + +    +   G  +   TI    ++ +   + L F
Sbjct: 392 LTIATGFVVDDAIVMIENIARYVEEGEPPLEAALKGSKQIGFTIISLTVSLIAVLIPLLF 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            G   G     FAIT+ ++I+IS   ++++V  M   ++R+                I  
Sbjct: 452 MGDVVGRLFHEFAITLAVTIVISAIVSLTLVPMMCAKLLRHTPPHESHRFEARAHRAIDW 511

Query: 537 CI-------AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            I            R R   V   +   + ++  +F     + +   G IQ    A + V
Sbjct: 512 VIARYAVALTWVLDRERSTLVVAVLTLVLTALLYVFIPKGFFPVQDTGVIQAITQAPQSV 571

Query: 590 DLSVVRSNLESLQIGDISFQNFDG 613
             + +    + L    +   +   
Sbjct: 572 SYASMAERQQELAAQILKNPDVQS 595



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 6/136 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                 Y  +    ++ L +  TL    L G   +  ++ A+    G+ V+D +V+ + +
Sbjct: 351 LFLANVYATIIPSLSVPLSLIGTLAVMYLCGFSLDNLSLMALTIATGFVVDDAIVMIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +         +   K   +     +  +++    ++P+   G   G +   FAI +
Sbjct: 411 ---ARYVEEGEPPLEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFHEFAITL 467

Query: 802 AFGIVVAASSSIFIAA 817
           A  IV++A  S+ +  
Sbjct: 468 AVTIVISAIVSLTLVP 483


>gi|15594485|ref|NP_212274.1| acriflavine resistance protein (acrB) [Borrelia burgdorferi B31]
 gi|2688027|gb|AAC66528.1| acriflavine resistance protein (acrB) [Borrelia burgdorferi B31]
          Length = 1036

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 166/514 (32%), Gaps = 33/514 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K          +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSVSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKIPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDSNSIAVSNVVMNEIEKLKLSMPKDMKLEIASDSTDFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+  +  +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFCLMYFVNISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G   + F  T+ +S+ +S+  AI +V  +
Sbjct: 462 ELGVYGDFFKDFTFTIVISLGVSLLVAIFLVPVL 495



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V+  ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDSNSIAVSNVVMNEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMKLEIASDSTDFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFCLMYFVNISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F   +   + V+   +I
Sbjct: 430 SSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFTFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 7/147 (4%)

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
               +  +F+ +      I T+ L     +    L G + ++ A   +L L+G  VN  +V
Sbjct: 885  FGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFLAGEKLSIFAAIGMLMLVGVVVNTGIV 944

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + D       L       R+ I +S    L   + +S+ + I ++PMA     G  ++  
Sbjct: 945  LVD---YTGLLIKRGFGLREAIIESCRSRLRPILMSSLTSIIGLIPMAFSSGSGNELLKP 1001

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFI 823
             A     G+  +   ++F    +    
Sbjct: 1002 IAFTFIGGMTASTFLTLFFIPMLFEIF 1028


>gi|225549886|ref|ZP_03770848.1| acriflavine resistance protein [Borrelia burgdorferi 118a]
 gi|225369577|gb|EEG99028.1| acriflavine resistance protein [Borrelia burgdorferi 118a]
          Length = 1071

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 165/514 (32%), Gaps = 33/514 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K          +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSVSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKMPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVMNEIEKLKLSMPKDMKLEIASDSTDFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+     +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFFLMYFANISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G   + F  T+ +S+ +S+  AI +V  +
Sbjct: 462 ELGVYGDFFKDFTFTIVISLGVSLLVAIFLVPVL 495



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
               +  +F+ +      I T+ L     +    L G + ++ A   +L L+G  VN  +V
Sbjct: 885  FGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFLAGEKLSIFAAIGMLMLVGVVVNTGIV 944

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + D       L       R+ I +S    L   + +S+ + I ++PMA     G  ++  
Sbjct: 945  LVD---YTGLLIKRGFGLREAIIESCRSRLRPILMSSLTSIIGLIPMAFSSGSGNELLKP 1001

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             A     G+  +   ++F    +     +
Sbjct: 1002 IAFTFIGGMTASTFLTLFFIPMLFEIFSN 1030



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V+  ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVMNEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMKLEIASDSTDFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFFLMYFANISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F   +   + V+   +I
Sbjct: 430 SSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFTFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511


>gi|311696153|gb|ADP99026.1| multidrug resistance protein [marine bacterium HP15]
          Length = 1029

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 59/511 (11%), Positives = 146/511 (28%), Gaps = 40/511 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G   A+     +  + ++P                          
Sbjct: 10  RPVLATVVSLLILLLGARAAM-----EMEIRQYPELESTTVT---------VTTAYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D + GF+     +  +          +  Q  + I      +        ++   +   
Sbjct: 56  SDLIKGFITTPLQQAIAEASGIDYLTSTSSQGTSTIEAKMVLNYDANAALAEIQAKVASQ 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  + +  ++ +TT    +++      +++     E +  + R    ++       +
Sbjct: 116 RNVLPAEAQDPVITSTTGDSTALMYIAFYSNEL--AVPEITDYLTRVVQPRLQALSGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    L    DP RL  +  T  ++       N           +          
Sbjct: 174 AELLGR-KFALRVWLDPERLAAVDMTPQEVVAKLRANNYQAAVGNTKGTYTE-------- 224

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          T++ D        ++   +    +        +           +
Sbjct: 225 ------------ISMTSDTDVADPDAFRNLVVKQSEGTQIRLQDIARVELGSETYDQLAL 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +              + +         +          S +  
Sbjct: 273 YKGQPATYVAIELAPGANPLTVAGLVKGELPDIESQLPSGLDVRLAYDASDFIEDSINEV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +VL+V+F+ +   +  +V   ++ L++I    ++ + G +L L ++  +VL
Sbjct: 333 IQTLLEAMIIVLVVVFLCLGSVRASIVPSVAVPLSLIGGAFIMLMFGFSLNLLTLLSMVL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I++ E +     + +S F +   G       I     T +     + F G 
Sbjct: 393 AIGLVVDDAIIMVENVHRHIEQGESRFDAAINGAREMAVPIIAMTTTLVAVYAPIGFMGG 452

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAM 510
             G     FA T+  +++IS   A+++   +
Sbjct: 453 LVGSLFTEFAFTLAGTVVISGIVALTLSPML 483



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/278 (10%), Positives = 90/278 (32%), Gaps = 11/278 (3%)

Query: 552  ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
             S+      +                   +       V L  V S  + ++  + +  N 
Sbjct: 735  FSMEGRSYQVIPQVDQQFRLDAQALNEYYIRADNGELVPLGSVVSFTQDVEPSNRTQFNQ 794

Query: 612  DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                     +        A   + +   +   +         T  +  + S  ++     
Sbjct: 795  QNSLTLQGVVMPGVAAGTAMDFMEQTAAEVFPQGYTYDYTGQTRQLATQGSALMVT---- 850

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
               +S + + + +  +F+ W      + ++ + +   + F  L     N+     ++TLI
Sbjct: 851  -FFLSLLVIYLVLAAQFESWRDPFIILVSVPMSVAGAMAFIVLGFATMNIYTQVGLITLI 909

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G    + +++ +    N       ++  D + ++    L   + TS+A   +++P+ +  
Sbjct: 910  GVVSKNGILIVE--FANQLQKERGLNKVDAVIEAAAIRLRPIIMTSLALIFAMVPLLIAI 967

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G     +  + ++ G+ +    +IF+     + +  
Sbjct: 968  GPGAESRFAIGLTISAGLGIGTLFTIFVLPAFYILLGR 1005



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 78/237 (32%), Gaps = 7/237 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L  +       +  D           ++        + +    +++     I   +
Sbjct: 250 TQIRLQDIARVELGSETYDQLALYKGQPATYVAIELAPGANPLTVAGLVKGELPDIESQL 309

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P                + I + I  ++ + I +L+ +++       ++     + L + 
Sbjct: 310 PSGLDVRLAYDASDFIEDSINEVIQTLLEAMIIVLVVVFLCLGSVRASIVPSVAVPLSLI 369

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  +FG   NL  + +++  IG  V+D +++ + +    +      S  D      
Sbjct: 370 GGAFIMLMFGFSLNLLTLLSMVLAIGLVVDDAIIMVENVH---RHIEQGESRFDAAINGA 426

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            E     +  +        P+   G   GS+   FA  +A  +V++   ++ ++  +
Sbjct: 427 REMAVPIIAMTTTLVAVYAPIGFMGGLVGSLFTEFAFTLAGTVVISGIVALTLSPML 483


>gi|125505596|gb|ABN45754.1| PseC [Pseudomonas syringae pv. syringae]
          Length = 1009

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 52/511 (10%), Positives = 146/511 (28%), Gaps = 35/511 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +  +  FP       +             LE    + +   +    ++  + L+      
Sbjct: 31  RLGIQDFPDTDLPAVV---------ISASLEGAAPEQLETEVARKLEDKLTSLRLLKHVT 81

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             + +    I + F   +      ++V   +    ++L        +   T    +++  
Sbjct: 82  TQVTEGSVLINVIFDIDKDGNEALNEVRNAVDSAAAELPASLDTPSVTRLTTNTTALLTY 141

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
             +  ++   A   S  +  +   Q+       +      +  ++  + DP+ +  L  +
Sbjct: 142 VVDAPRMDEEA--LSWFVDNELSKQLLTVRGVAKISRVGGVDREVQVDLDPALMAGLGLS 199

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
              ++           G    +   + +      ++D   +  I +              
Sbjct: 200 VTDIADRLRAMQKDNSGGQGDLGSGQQALRVLGGIDDPAALGAIRIPV------------ 247

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                      R         +    A            +           S        
Sbjct: 248 --------SDGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSDVGVTRDL 299

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                        +++       V   + +             L ++V++  +   +  +
Sbjct: 300 RQAVNEFAIQHPDVRIEEAS-NAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATI 358

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   ++ L++I T  ++   G +L   S+  + L IG+ VD  I+  E I    R  ++ 
Sbjct: 359 IVATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENIARHLRMGKTP 418

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAIS 505
             +           +  + +T +   +   F GG +    R F +T   +++ S+  A  
Sbjct: 419 RQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVARL 478

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +   M  ++++ +     D   + R+     
Sbjct: 479 LTPMMAAYLLKPRPHGEHDSGLMRRYLGWIH 509



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 83/254 (32%), Gaps = 6/254 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I++ V   R + +  + +  ++    +               ++      V  TR L 
Sbjct: 241 GAIRIPVSDGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSDVGVTRDLR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +     P   I+        +         +      +A+L+  W    W   +  
Sbjct: 301 QAVNEFAIQHPDVRIEEASNAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATIIV 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L I  T G     G   N  ++ A+  +IG  V+D +V  + +    +      +
Sbjct: 361 ATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENI---ARHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            R    ++ +E     + T++      LP A  GG        F +  +  ++ +   + 
Sbjct: 418 PRQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVAR 477

Query: 814 FIAAPILLFIYDWR 827
            +   +  ++   R
Sbjct: 478 LLTPMMAAYLLKPR 491



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 86/223 (38%), Gaps = 6/223 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +      V+E  ++        + ++  E    ++  EL     + + 
Sbjct: 785  DRLRNITLSIELNGSNLGEVMEQARQLPVMQNLPAQVKLVEQGELQLMSELFGNFSLAMA 844

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +    +   + + F  +   L  ++ L L +   L    + G+ F++ +V  +L L+G  
Sbjct: 845  VGVFCIYAVLVLLFHDFMQPLTILSALPLSLGGALLALLIGGMSFSMASVIGLLMLMGIV 904

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGS 792
              + +++ +     M     ++S  D +  + ++     + T++A    +LP A+ WGG 
Sbjct: 905  TKNSILLVE--YAIMARRAPTVSRYDALIDACHKRARPILMTTIAMGAGMLPTALGWGGE 962

Query: 793  V--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                   A+ +  G++ +   S+ +   I  ++ D   +  R+
Sbjct: 963  SGFRQPMAVVVIGGLLASTVLSLLVVPVIFTYVDDGHERLKRL 1005


>gi|317052507|ref|YP_004113623.1| acriflavin resistance protein [Desulfurispirillum indicum S5]
 gi|316947591|gb|ADU67067.1| acriflavin resistance protein [Desulfurispirillum indicum S5]
          Length = 1016

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 69/665 (10%), Positives = 169/665 (25%), Gaps = 41/665 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
               ++L++M+   GL          + +  FP                     L     
Sbjct: 11  PIPAILLFAMLTVAGLFA-----FHGARIQHFPDVDLPMVT---------VVASLPGTAP 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   +    +   + +K        ++     ++  F   +  +   D     +  V 
Sbjct: 57  AQMETEVARKLENAMATMKGLRHLHTVVQDGVATVSAEFRLEKPPQEALDDTRAAVARVR 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    +  ++     K  +I+       ++   A   S  +  Q   ++         
Sbjct: 117 GDLPAALRDPVISRIEFKNEAILTYTVASSRMDEEA--LSWFVEDQITRRLLAVPGVGAI 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
           +       ++  E DP RL       A +S           G    +     +      V
Sbjct: 175 IRVGGASREVRVELDPDRLLAWRLNAADISRQLAQVQREAPGGRARLGSGEQTVRTVATV 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                ++ + +                         +         +   LA    G  L
Sbjct: 235 SSAEALAAMEIPLP--------------------DGQVVRLDQVATVTDTLAERRSGAFL 274

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +           S            A LR     ++L           L +     
Sbjct: 275 DGRPVVGFEIFRATGASDLDVAHGVRQALAELREERPDLELTEAV-NATDQVLENFRGSL 333

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                 A L ++V+ + +   +  L+   ++ L++I T   +  +G TL + ++  + L 
Sbjct: 334 SLLIEGALLAVLVVGLFLRNLRATLICAVALPLSIIPTFLFMQWMGFTLNIITLLALSLV 393

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF--- 480
           IGL VD  I+  E I     + +    +           +  +  T +   +   F    
Sbjct: 394 IGLLVDDAIVEVENIMRHMGRGKEPLVAAREAADEIGLAVVATTFTLIAVFLPTAFMQGL 453

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G     F  T  +++LIS+  A  +   M  ++++      ++   +  +  +      
Sbjct: 454 AGKFFVQFGWTASIAVLISLAVARLLTPMMAAYLLKKPTRPHVEPFWIPTYLRVARWAFT 513

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
                        +      +      G            + V        +  R+  + 
Sbjct: 514 HKSATLAITAAFIL-VCSVPLLTGAIKGDFMPPSDLSQTMISVELPPGSTYAQTRAIADE 572

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            +    +  + +     +                                  + + +  +
Sbjct: 573 ARAIVATHPHVEQVYTAIGGGSAGDNPMSGAAESRTAQLTLNLTPRKERPGVSQQDIERE 632

Query: 661 ISREL 665
           +   L
Sbjct: 633 LRTRL 637



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 78/255 (30%), Gaps = 6/255 (2%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           +++ +   + V L  V +  ++L                    +      +     +   
Sbjct: 243 MEIPLPDGQVVRLDQVATVTDTLAERRSGAFLDGRPVVGFEIFRATGASDLDVAHGVRQA 302

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
             ++ E  P   +        ++         + +  + +A+L+           L    
Sbjct: 303 LAELREERPDLELTEAVNATDQVLENFRGSLSLLIEGALLAVLVVGLFLRNLRATLICAV 362

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L L I  T  F    G   N+  + A+  +IG  V+D +V  + +   M+         
Sbjct: 363 ALPLSIIPTFLFMQWMGFTLNIITLLALSLVIGLLVDDAIVEVENI---MRHMGRGKEPL 419

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFI 815
               ++ +E     V T+       LP A   G        F    +  ++++ + +  +
Sbjct: 420 VAAREAADEIGLAVVATTFTLIAVFLPTAFMQGLAGKFFVQFGWTASIAVLISLAVARLL 479

Query: 816 AAPILLFIYDWRAKN 830
              +  ++     + 
Sbjct: 480 TPMMAAYLLKKPTRP 494



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 80/215 (37%), Gaps = 6/215 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        D  A   V +      +       +   +I   + S EL R  ++ + 
Sbjct: 791  DRLRNVNFEIELDGQALGDVQQRASALPSLSHLPPGLTRHDIGQAETSNELGRSFLLAMG 850

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
                 + I + + F  W   +  +  L+L I  T+    L G   ++ A+  ++ L+G +
Sbjct: 851  TGVACIYIVLVLLFHAWAQPVTILGALLLSIPGTILALFLTGTHLSMPAMIGMVMLMGIA 910

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGS 792
              + +++ +     M      ++  D +  +  +     V TS+A    +LP+A+ +G  
Sbjct: 911  TKNSILLVE--YAIMAQRDHGLARLDALLDACRKRARPIVMTSLAMGAGMLPIALGFGAD 968

Query: 793  V--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                   AI +  G++ +   S+ +   +   + D
Sbjct: 969  PSFRAPMAIVVIGGLITSTFLSLLVIPVLYEIVDD 1003


>gi|114320546|ref|YP_742229.1| CzcA family heavy metal efflux protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226940|gb|ABI56739.1| heavy metal efflux pump, CzcA family [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 1039

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 74/597 (12%), Positives = 163/597 (27%), Gaps = 40/597 (6%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           +    G+  A      Q+ LD  P       I          H          V   +  
Sbjct: 22  VFVAWGVFSA-----RQTPLDAIPDLSDVQVI---------VHTEYAGQAPQVVEDQVTY 67

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
                   +              + + + F D         +V  +L  V   L  + + 
Sbjct: 68  PLSTAMLAVPGARDVRGFSMFGDSYVYVLFEDGTDPYWARSRVLEYLSQVAPDLPDEARP 127

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            L    T                     +           ++       +      ++ Q
Sbjct: 128 ALGPDATGVGWVYQY-ALVDRTGTHDLAQLRSLQDWFLKFELQSVTGVSEVATLGGMVNQ 186

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
                DP+R R    T  ++       N    G +  +        ++  +    ++   
Sbjct: 187 YQVVLDPNRARAYGLTLGQIRQAIQDGNREAGGSVVEMAEAEYMVRSRGYLTGLNDLG-- 244

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                            + +   E G     E   +    P A      +     +  A+
Sbjct: 245 ----------------HIPVGASEEGTPVLLEDVAEIRNGPEARRGLAELDGEGEVVGAL 288

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              +   +   TIE        LR         +           S             +
Sbjct: 289 VVMRHGENALATIERVKERVDELRGSLPEGVEIVETYDRSTLIEASVQNLSVKLVQEFLI 348

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           +  V  + +L+ +  LVA  S+ + ++  L ++   G    + S+ GI + IG  VD+ I
Sbjct: 349 IAAVSLVFLLHLRSALVAIVSLPIGILAALLIMQQQGINANIMSLGGIAVTIGAMVDAAI 408

Query: 433 LVNERIR---EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVR 486
           ++ E +    E    N   + ++ +        +F + +   ++ + LF      G   +
Sbjct: 409 VMVENLHKRLERAPPNADRWETVALAAKETGRPLFFALLIITVSFLPLFALEGQEGRMFK 468

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
             A T   ++  +    I++V  +M +++R +                   +    +R  
Sbjct: 469 PLAFTGTYAMAAAAGLGITLVPVLMGYLVRGRIRPEARHPISRLLIAGYRPVLRGLLRYP 528

Query: 547 FWGVGISILFSICSICL-LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           +  VG ++L +   +               +G +           +  VR+ L+   
Sbjct: 529 WATVGGAVLVAATMVIPASKLGTEFMPELDEGDLMYMPSLEPGASIDKVRAFLQQTD 585



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 82/266 (30%), Gaps = 8/266 (3%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                  ++    + +       + L  + S         I  +N       +V ++ +  
Sbjct: 766  QDWRDSLERLRELPVVTPNGAHLPLESLASVEIVDGPAMIRTENARLNGWVVVDIRGRDL 825

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             S        + ++                   +    L    +V V +  I ML+Y+  
Sbjct: 826  GSYVADARQAVAEQVDLPPGYSIHWSGQYEHMERAKERL--AYVVPVTVVLIFMLLYLCF 883

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            R     AL  +  L       +      G E ++   A  + LIG +    VV+   +R 
Sbjct: 884  RSGPE-ALMLMGALPFAAVGGVWLLYGLGYEVSVAVAAGFILLIGLATEFAVVMLMYVRN 942

Query: 747  NMKLYTT--SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
             +  +        ++ I +     +     TS+   + + P+ +    G   +   A PM
Sbjct: 943  AVHQHRPRDRRELKEAIIEGAVMRVRPKAMTSLTVVLGLSPLLMDSGPGSEAMQRIAAPM 1002

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWR 827
              G++ A   S+ +   +       R
Sbjct: 1003 IGGMITAPLVSLLLIPVLYWLWQRHR 1028



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/283 (13%), Positives = 86/283 (30%), Gaps = 8/283 (2%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
               +          Y         + V A+      ++    E     +      + + 
Sbjct: 221 VVEMAEAEYMVRSRGYLTGLNDLGHIPVGASEEGTPVLLEDVAEIRNGPEARRGLAELDG 280

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V                    K+  + +  S  +  EIV       LI   +  + +
Sbjct: 281 EGEVVGALVVMRHGENALATIERVKERVDELRGSLPEGVEIVETYDRSTLIEASVQNLSV 340

Query: 676 SAIAMLIYIW-----IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +   + I             AL AI +L + I   L      GI  N+ ++  +   I
Sbjct: 341 KLVQEFLIIAAVSLVFLLHLRSALVAIVSLPIGILAALLIMQQQGINANIMSLGGIAVTI 400

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+  +V+ + + K ++    +    + +  +  ET     +  +   +S LP+    
Sbjct: 401 GAMVDAAIVMVENLHKRLERAPPNADRWETVALAAKETGRPLFFALLIITVSFLPLFALE 460

Query: 791 GS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           G    +    A    + +  AA   I +   ++ ++   R + 
Sbjct: 461 GQEGRMFKPLAFTGTYAMAAAAGLGITLVPVLMGYLVRGRIRP 503


>gi|323440564|gb|EGA98275.1| membrane transporter [Staphylococcus aureus O11]
          Length = 822

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 76/592 (12%), Positives = 190/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ N +  +    +       L    +    +
Sbjct: 95  KDDKHIDKISDPYENKQISKDKTTAFADITYNVSQTSLKDDSRDNIKSHLKDLRDNHNVQ 154

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 155 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 214

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 215 TYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYVKGIGLAVGTAGSAVIF 274

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 275 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 334

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 335 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 394

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 395 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 454

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 455 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 514

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 515 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 574

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 575 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTRDNDYSIKVGLKESGPVIVA 631

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 632 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 683



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 87/263 (33%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          +    +
Sbjct: 72  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYNVSQTS 131

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +      + +  L    N +             G    ++  I   + + I F    
Sbjct: 132 LKDDSRDNIKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 191

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 192 AAGLPIISALIGLASGVGIISLLTYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 248

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 249 QVMKTETDYVKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 308

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 309 VFSALTLLPALISIFHKRIKVNK 331


>gi|224534019|ref|ZP_03674603.1| acriflavine resistance protein [Borrelia burgdorferi CA-11.2a]
 gi|224512855|gb|EEF83222.1| acriflavine resistance protein [Borrelia burgdorferi CA-11.2a]
          Length = 1071

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 165/514 (32%), Gaps = 33/514 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K          +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSVSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKMPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVMNEIEKLKLSMPKDMKLEIASDSTDFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+     +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFFLMYFANISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G   + F  T+ +S+ +S+  AI +V  +
Sbjct: 462 ELGVYGDFFKDFTFTIVISLGVSLLVAIFLVPVL 495



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 7/149 (4%)

Query: 681  LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
               +  +F+ +      I T+ L     +    L G + ++ A   +L L+G  VN  +V
Sbjct: 885  FGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFLAGEKLSIFAAIGMLMLVGVVVNTGIV 944

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + D       L       R+ I +S    L   + +S+ + I ++PMA     G  ++  
Sbjct: 945  LVD---YTGLLIKRGFGLREAIIESCRSRLRPILMSSLTSIIGLIPMAFSSGSGNELLKP 1001

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             A     G+  +   ++F    +     +
Sbjct: 1002 IAFTFIGGMTASTFLTLFFIPMLFEIFSN 1030



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V+  ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVMNEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMKLEIASDSTDFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFFLMYFANISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F   +   + V+   +I
Sbjct: 430 SSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFTFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511


>gi|75675714|ref|YP_318135.1| acriflavin resistance protein [Nitrobacter winogradskyi Nb-255]
 gi|74420584|gb|ABA04783.1| Acriflavin resistance protein [Nitrobacter winogradskyi Nb-255]
          Length = 1040

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 61/519 (11%), Positives = 133/519 (25%), Gaps = 38/519 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +   G L           +   P                     L   
Sbjct: 9   RRPIATSLLGIALMIGGAL-----GYWALPVSALPQVDFPTVQ---------VRTQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   L    +     +        +     ++I+L F   R  +     V   +  
Sbjct: 55  SPDVVASLLTAPLERQLGQIPSLSSMTSTSSYGLSQISLQFNLDRDIDGATQDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +              + V++   +          S         ++       
Sbjct: 115 AAGILPRNLPYPPTYAKVNPADAPVMT-LALTSDTVSMRAMSDIADTILTQRLSQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +  + D +RL     +   +       N S             +     
Sbjct: 174 RVSVLGGLKPAVRVQADLTRLAAYGISMEDLRTAIASANVSGPKGSLDGAQQAYTIAAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                            I                 I   L     G 
Sbjct: 234 QVTTA--------------------DAYRPIIIAYRNGSPVTIGDVARIVDGLENNRTGG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    +         L++         V          S   
Sbjct: 274 WYNGTPAVIIDIQRQPGANVIEVVRQIREEIPKLQSAIPAGVDLTVVSDRTVTIRASVHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV +V+ + +   +  L+A  ++ L++I +  ++   G +L   S+  + 
Sbjct: 334 VQFTLILSIVLVTLVVLLFLRSLRATLIAGVALPLSLITSFGIMYFAGFSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +G G  VD  I++ E I       +SV  +   G      T+    ++ +   + L F  
Sbjct: 394 IGTGFVVDDAIVMIENIVRHIENGESVMEAALRGAREIAFTVISLTVSLIAVFIPLLFMS 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
              G   R FA+T+ ++++ S   ++++   M   +++ 
Sbjct: 454 GLVGRMFREFALTLTIAVVTSAVVSLTLTPMMCSRLLKR 492



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSLRATLIAGVALPLSLITSFGIMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      S  +   +   E     +  +++     +P+    G V      FA+ +   
Sbjct: 411 VRHIENGESVMEAALRGAREIAFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           +V +A  S+ +   +   +     
Sbjct: 471 VVTSAVVSLTLTPMMCSRLLKRSE 494



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 66/182 (36%), Gaps = 6/182 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    ++ VK   T I   S I            + +      ++ + + + I + + +
Sbjct: 817 EALGDAVKRVKTIETRIGMPSNIAGMFSGDAAEFSKSLAGQPWLILAALVTIYIVLGVLY 876

Query: 689 KWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           + Y     I + +    I   L    LFG + ++  +  ++ L+G    + +++ D   +
Sbjct: 877 ESYIHPITILSTLPSAGIGAILALM-LFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALE 935

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
                   +S  D I ++        + T++AA    LP+AV           P+   I+
Sbjct: 936 --AERRQGMSSTDAIVQACLLRFRPIMMTTLAALFGALPLAV-ESGTGSELRFPLGISII 992

Query: 807 VA 808
             
Sbjct: 993 GG 994


>gi|254281864|ref|ZP_04956832.1| multidrug efflux RND transporter [gamma proteobacterium NOR51-B]
 gi|219678067|gb|EED34416.1| multidrug efflux RND transporter [gamma proteobacterium NOR51-B]
          Length = 1013

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 69/568 (12%), Positives = 158/568 (27%), Gaps = 39/568 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++   +  IGL         +  L  +P                    V    
Sbjct: 9   RRPVLSIVVSMALVIIGL-----RSFQELTLREYPEIKYPTV---------AITTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + G +        +  +       +     + IT         ++   +++  +  
Sbjct: 55  SGDVIQGNVTAPLLAEIAKAEGIDYLESTSNDSISTITAHLYPDHSIDSALLEISSKVDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L +  +  ++   +    S++    N D +     E +  + R  I Q        
Sbjct: 115 MRAELPLGTEDPVVEKGSAFLDSVLYMAFNGDSLTES--EITEYVRRVVIPQFSTLPGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +    D  R+     T  ++S      N           F + +   + 
Sbjct: 173 SATLAGNREFTMRIWLDADRMAAFDITAGQVSRAIRENNFPGIAGRIKGAFRQFNVTPET 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   E                       +                 +    A      
Sbjct: 233 NLETVEEFQ--------------------SLIVKTDNNGIVRLKDVATVEMGPAQSDSLM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +    ++ A      +           +      +   S + 
Sbjct: 273 MEGGKPAVLVRIGASLGANPLDVVDRAYEQLESIEEQLPEGMSVKITFDPTKSIRSSINE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    + +V++V+F+ +   +   +   +I L++I     +  LG TL L ++  +V
Sbjct: 333 VIKTIIEASLIVIVVVFLFLGSPRAVSIPLVTIPLSLIGVCIGIFALGFTLNLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I+    + Q    +   G       +    +T       +   G
Sbjct: 393 LAIGLVVDDAIVVVENIQRHIEQGQEPMEAAIEGAREIAFPVVAMTLTLAAVYAPIGLIG 452

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G +      FA  +  +++IS   A+++   M   I+     +      L + F      
Sbjct: 453 GLSGALFSEFAFALAGAVVISGIVALTLSPMMCSKILVAGSSERGLAAWLDKNFDWLQQR 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFT 566
               ++         ++F       L+ 
Sbjct: 513 YRSVLKVTLNAKASILVFVGLVFVALYF 540



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 80/249 (32%), Gaps = 10/249 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A+          NL    + +   Q        +  L            + E +  K  
Sbjct: 767  TASNMTVPLSTVVNLREEVVPNALTQYQQLNSTTISALMAPGVTIGDGIAIFEDLAAKTL 826

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
                            +       K +   + S + + + +  +F+ +   +  + ++ L
Sbjct: 827  PSGFDYAFLGKSKQFIEEGN----KMMFTFMFSFLIIYLVLAAQFESFTDPMIVLISVPL 882

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L   A+     N+     +LTLIG      +++ D    N    +  +S  D ++
Sbjct: 883  SICGGLVPLAMGYGTINIYTQVGLLTLIGLISKHGILIVD--FANKLRESKQLSIPDAVE 940

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + T+ A    VLP+ +    G     S  + + FG+ V    ++F+   +
Sbjct: 941  EAAAVRLRPILMTTAAMVFGVLPLLLATGSGSEARFSIGVVIFFGMSVGTLFTLFVVPTV 1000

Query: 820  LLFIYDWRA 828
               +     
Sbjct: 1001 YTLLARRNR 1009



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 75/188 (39%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             LE +++++ E + +    +          E+I+  I   +I  + + +++        
Sbjct: 301 EQLESIEEQLPEGMSVKITFDPTKSIRSSINEVIKTIIEASLIVIVVVFLFLGSPRAVSI 360

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  I   ++ +    G FAL G   NL  + A++  IG  V+D +VV + +    +   
Sbjct: 361 PLVTIPLSLIGVCI--GIFAL-GFTLNLLTLLAMVLAIGLVVDDAIVVVENI---QRHIE 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
                 +   +   E     V  ++       P+ + G   G++   FA  +A  +V++ 
Sbjct: 415 QGQEPMEAAIEGAREIAFPVVAMTLTLAAVYAPIGLIGGLSGALFSEFAFALAGAVVISG 474

Query: 810 SSSIFIAA 817
             ++ ++ 
Sbjct: 475 IVALTLSP 482


>gi|148255494|ref|YP_001240079.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           BTAi1]
 gi|146407667|gb|ABQ36173.1| Putative multidrug efflux transporter,AcrB/AcrD/AcrF family
           [Bradyrhizobium sp. BTAi1]
          Length = 1067

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 73/591 (12%), Positives = 173/591 (29%), Gaps = 40/591 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L+ ++  +G +      L    + + P+                  +     
Sbjct: 45  RKPIPSLVLFGVLIVLGAVS-----LKTLPITQMPNIDIPIVT---------VTIAQTGA 90

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + +        S+    +  T+ F      +   + V   +  
Sbjct: 91  APSELETQVTKNVENAVTGVVGAKHVTSSISDGVSVTTIEFQLGTPADRAVNDVRNAMAN 150

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L    ++  +       ++IV    +       A + S  +       +       
Sbjct: 151 IRSELPQSIEEPSIQRVEVGGMAIVTYAVSFPAWT--AEQVSWFVDDVITGALQGVRGVA 208

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   +     ++     P RL  L  T A ++      N    G    V     +     
Sbjct: 209 QVKRAGGADREIRVSLQPDRLIALGITAADVNAQLRATNVDLSGGRGEVGAGEQTIRMLA 268

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  ++   +                       G RR        +    A      
Sbjct: 269 GAATIDGLANTAIVLP--------------------GGRRTALKEIATVIDGAADARSFA 308

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +       +A+   +  +  A      L A   P       +  V         
Sbjct: 309 RLDGRPVVTFGV-FRAKGFSDVAVAEAVGKRLELLAKEHPDLSVSEIDSTVRYTKSDYRA 367

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A L ++V+ + +   +   ++  +I L+++ T  ++ ++G +L   S+  I 
Sbjct: 368 TMQTLTEGAILAVVVVLIFLRDLRATAISVLAIPLSILPTFWVMDIIGFSLNAVSLLAIT 427

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L  G+ VD  I+  E I    R  +S + +           +  + +T +   + +    
Sbjct: 428 LVTGILVDDAIVEIENIVRHIRMGKSAYRASLQAADEIGLAVVATTMTIVAMFMPVSLMD 487

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+ +++  S+  A  I   +  + +R  +  S     L R +L     
Sbjct: 488 GIAGQYFKQFGLTVAIAVTFSLLVARLITPLLAAYFLRAPQRHSEGHGVLMRHYLRMLEW 547

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           +++         G+  L S+     L    L      +  + + +     +
Sbjct: 548 SLRHRFVTLAFAGLVFLGSLMVAGALPLGFLPTDDLSRSVLLIELPPGSTI 598



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 70/202 (34%), Gaps = 13/202 (6%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +L      ++     ST++ T+       + L    I+ V++  I              
Sbjct: 340 ELLAKEHPDLSVSEIDSTVRYTKSDYRATMQTLTEGAILAVVVVLI-------FLRDLRA 392

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              ++  + L I  T     + G   N  ++ A+  + G  V+D +V  + +   ++   
Sbjct: 393 TAISVLAIPLSILPTFWVMDIIGFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHIR 449

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              S      ++ +E     V T+M      +P+++     G     F + +A  +  + 
Sbjct: 450 MGKSAYRASLQAADEIGLAVVATTMTIVAMFMPVSLMDGIAGQYFKQFGLTVAIAVTFSL 509

Query: 810 SSSIFIAAPILLFIYDWRAKNA 831
             +  I   +  +      +++
Sbjct: 510 LVARLITPLLAAYFLRAPQRHS 531



 Score = 44.3 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 54/139 (38%), Gaps = 6/139 (4%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             +  I ++ L I   L    L G   NL+A+   L L+G    + +++ D     +    
Sbjct: 908  PITIIFSMPLSIGGALLALLLAGHAINLSAIIGFLMLMGIVTKNAILLVDFA---ITEVA 964

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
            + +     + ++  +     + T+ A    ++P A+    GG+     A+ +  G++ + 
Sbjct: 965  SGVERTTALLEAGRKRAQPVIMTTAAMTAGMVPSALGLGDGGAFRSPMAVALIGGLLAST 1024

Query: 810  SSSIFIAAPILLFIYDWRA 828
              S+         + D+  
Sbjct: 1025 FLSLVFVPAAFTIMDDFGR 1043


>gi|116072162|ref|ZP_01469430.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           BL107]
 gi|116065785|gb|EAU71543.1| putative RND family multidrug efflux transporter [Synechococcus sp.
           BL107]
          Length = 1036

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/512 (12%), Positives = 147/512 (28%), Gaps = 30/512 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   + V+   +I     L+A    L    L+  P   P                    
Sbjct: 9   LRRPVFTVVCSLLI-----LLAGLTSLLGLGLEDLPQLAPTRV---------SVSASFPA 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D V   +    ++  + L+       + RQ    I+L F+     E  A KV   + 
Sbjct: 55  ASPDVVEQSVTAVLEQQLNGLEGVESISSTSRQGGASISLRFSSG-DPELNAIKVQNEVS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L     +  L         +++   +           +  + +   + +  +   
Sbjct: 114 LATRRLPTAVGRQGLQVRRSSNDLLMILGFSHPPDQYVPTFLTGWLDQSLRESLLTTPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      +      DP RL Q   T   ++      N        G           
Sbjct: 174 GDVVVFGGSELSFRIWLDPQRLEQAKLTVTDVTQALAEQNVLAAIGSIGASPAPTGQLIS 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             VE +  +                    + +   + G     +     +    +     
Sbjct: 234 LPVEAEGRLRSQDDFEN------------LVLRRFDNGGLLRLKDVGRVVLGQKSYGRTA 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +   +      +       L +   P     +          +  
Sbjct: 282 MNLQGERSVAVGLYQRDGANALQVSRSIKDQLQQLESNFPPGVELSLIVDVADTVQDNLD 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      LVL+VL + +   +  ++   ++ + ++ +L ++ L G+ L    + G+
Sbjct: 342 RTLSTLRDAVILVLLVLVLFLGRWRLAMIPGIAVPVALVGSLVVVRLSGSELNSLILFGL 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  G+ VD  I+V E I     + ++   + +   +   S +  +++      + +   
Sbjct: 402 VLATGIVVDDAIVVTEDIASRIERGEAPQQAAEHAMAELASAVVATSLVLAAVFIPVLLI 461

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRA 509
            G      +  A+ +G +IL S   A+S    
Sbjct: 462 PGSIGRLYQPIALAIGGAILFSTLNALSFTPM 493



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
           +W  A+     + + +  +L    L G E N   +  ++   G  V+D +VV + +    
Sbjct: 364 RWRLAMIPGIAVPVALVGSLVVVRLSGSELNSLILFGLVLATGIVVDDAIVVTEDI---A 420

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
                  + +   + ++ E     V TS+      +P+ +  GS+       A+ +   I
Sbjct: 421 SRIERGEAPQQAAEHAMAELASAVVATSLVLAAVFIPVLLIPGSIGRLYQPIALAIGGAI 480

Query: 806 VVAASSSIFIAA 817
           + +  +++    
Sbjct: 481 LFSTLNALSFTP 492



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 54/141 (38%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      + T+ + +   L    L G+  ++     +L LI  +  + +++ +   + +
Sbjct: 896  SFIDPFIILLTVPIALMGALIGLKLRGLPLDVYGQMGLLVLISLAAKNGILIVEFANQRL 955

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                     +D I +S    +   + T+  + +  LP+ +    G +   S    +  G+
Sbjct: 956  AQGIK---IKDAILESAINRMRPILLTATTSLVGFLPLLMASGSGSASRISIGTVVFSGL 1012

Query: 806  VVAASSSIFIAAPILLFIYDW 826
            +++   S+F+     L I   
Sbjct: 1013 LMSTWLSLFVVPAAYLLIKRK 1033


>gi|13473148|ref|NP_104715.1| RND efflux transporter [Mesorhizobium loti MAFF303099]
 gi|14023896|dbj|BAB50501.1| RND efflux transporter [Mesorhizobium loti MAFF303099]
          Length = 1027

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 79/612 (12%), Positives = 166/612 (27%), Gaps = 51/612 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L  +I  +G        +    + ++P                 + + +   
Sbjct: 9   RRPVLSTVLGCLILLLG-----FQGIFNLSIRQYPKVDE-------------TAITITTA 50

Query: 62  EDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +Q           +  +       S R   + +T+        +    +V  
Sbjct: 51  YPGASADLIQGFISAPIARAVASTENIDYVTSSSRPSSSTVTVQMKLGSNPDVALTEVLS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +QGV   L    K  ++V  T ++ +++        +     + +  I R    ++   
Sbjct: 111 KVQGVRGTLPDASKDPVIVKGTGQQFAMMYISMQNPNMTKE--QLTEYIERVIRPRMSTV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP RL     T A++       N           ++  S 
Sbjct: 169 EGVADVQIFGAQEYSMRVWIDPIRLAARGVTAAEVLTAINNSNFLSAPGNTQNEYVVSSI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  ++                      +   ++                 +    A  
Sbjct: 229 SVRSTLQTP--------------------EAFAELPLRSTDGNVVRLRDVARVELGAANT 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T      L   ++          V     G    
Sbjct: 269 DTRVSFNGKPGTFLAIFPTPAANPLTTAAALTKLVPQIQETLPKGMTIEVVYDATGQISA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V++V+ + +   +  ++   +I L++I    LL  +G ++ L S+
Sbjct: 329 SIEEVFKTIGEAVAIVVVVILLFLGSFRSVMMPIITIPLSLIGVCFLLFAVGYSINLLSL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +VL IGL VD  I+V E I       + +   +   G     S I    +T       
Sbjct: 389 LAMVLAIGLVVDDAIVVVENIHRHMEEDHMTPMQAAFSGMREIASAIVAMTMTLAAVFAP 448

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F G   G   R FA+T+  S+++S   A++I   M   +++              F  
Sbjct: 449 LAFTGGLTGALFREFAVTLAGSVVLSGVIAVTITPMMSARLLKAGTPGRFQRIVDGIFAR 508

Query: 534 IPDCIAIQFMR---ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
           +              R   + I +     +  +          +   G  L ++      
Sbjct: 509 VEHVYERAVTGSLNYRPLTLIIVLALVGVTGFMFTKTSSELAPEEDQGFLLSLVTAPTYA 568

Query: 591 LSVVRSNLESLQ 602
            S       +  
Sbjct: 569 TSDYTETYVNQM 580



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/135 (18%), Positives = 52/135 (38%), Gaps = 5/135 (3%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               +   +  I T+ L +          G   NL ++ A++  IG  V+D +VV + + 
Sbjct: 351 FLGSFRSVMMPIITIPLSLIGVCFLLFAVGYSINLLSLLAMVLAIGLVVDDAIVVVENIH 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
               +    ++        + E     V  +M       P+A  G   G++   FA+ +A
Sbjct: 411 --RHMEEDHMTPMQAAFSGMREIASAIVAMTMTLAAVFAPLAFTGGLTGALFREFAVTLA 468

Query: 803 FGIVVAASSSIFIAA 817
             +V++   ++ I  
Sbjct: 469 GSVVLSGVIAVTITP 483



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 87/276 (31%), Gaps = 11/276 (3%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              I            +  G   +  +    V LS V +   +     I   N        
Sbjct: 744  YDIIPQVPQQFRDNPERLGEYFVRSVTGEMVPLSAVVNISNNASPAAIEQFNQLNSSTIS 803

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                           + ++ ++ + +   +     +     + +  L     +    + I
Sbjct: 804  ALPLPGVTTGDGLKVLEDIARESLPDTFFIDYSGQSRQEKEQGNTIL-----IAFAAAVI 858

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  +  + L I   +    L     N+     ++TLIG      
Sbjct: 859  VIYLVLAAQFESFRDPLIIMMAVPLSIFGAIVPLNLGLGTLNIYTQVGLITLIGLITKHG 918

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ +    N +     +  RD I  S    L   + T+ A  + V+P+      G +  
Sbjct: 919  ILLVE--FANQQREAHGMRRRDAIIASAKVRLRPILMTTAAMALGVVPLITSSGAGAAAR 976

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             S  + +  GI+V    ++F+      FI      +
Sbjct: 977  YSMGLVIFTGILVGTMFTLFVVPMFYTFIASKDLPH 1012


>gi|77163737|ref|YP_342262.1| acriflavin resistance protein [Nitrosococcus oceani ATCC 19707]
 gi|254435228|ref|ZP_05048735.1| RND transporter, HAE1/HME family, permease protein [Nitrosococcus
           oceani AFC27]
 gi|76882051|gb|ABA56732.1| Acriflavin resistance protein [Nitrosococcus oceani ATCC 19707]
 gi|207088339|gb|EDZ65611.1| RND transporter, HAE1/HME family, permease protein [Nitrosococcus
           oceani AFC27]
          Length = 1028

 Score =  137 bits (344), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 65/512 (12%), Positives = 146/512 (28%), Gaps = 39/512 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  IG+       L    + ++P                         
Sbjct: 9   RRPVLASVVSLLILLIGM-----RSLTLLEVRQYPETENTVVT---------VSTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +NGF+     +  +  +     V +  Q  + I      +        ++   +  
Sbjct: 55  SSELINGFITTPLQQAIAEAEGIDYLVATSTQGHSIIEAHMVLNYDSNAAVAEIQAKVAS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  + +  ++ +TT    +++      +       + +  ++R    ++       
Sbjct: 115 QRNVLPEEAENPVIDSTTGDSTALMYMAFYSEA--MSPAQITDYLLRVVRPKLQAVPGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP R+  L  T   +    +  N           ++        
Sbjct: 173 KAQLIGNKTFAMRIWLDPRRMAALGVTANDVREVLLENNYLASVGHTKGAYVAVDLSATT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +                     +++   E                         
Sbjct: 233 DISREEDF--------------------LNLVVREADGALVRLRDVAEPQLGAEDYDSSN 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +          L   +R          +          +   
Sbjct: 273 WYNGKPAIFIGIEQAPGANPLDIAGHLHDLMPEIRRQLPSGVDGYIVYDASAYIEDAIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +VL+V+F+ +   +  LV   ++ L++I    L+ +LG +L L ++  +V
Sbjct: 333 VFRTLAEAVLVVLVVIFLFLGSLRAALVPAIAVPLSLIGGAFLMLVLGFSLNLLTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +S F +   G       I     T +     + F G
Sbjct: 393 LAIGLVVDDAIIVVENIHRHLEHGESRFQAAIHGARELGLPIIAMTTTLVAVYAPIGFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAM 510
              G     FA T+  ++L+S   A+++   +
Sbjct: 453 GLVGTLFTEFAFTLASAVLVSGVVALTLSPML 484



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/291 (10%), Positives = 97/291 (33%), Gaps = 12/291 (4%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            +    ++      +            +      +   A   + L+ + S  E+++     
Sbjct: 733  YINWFNLEGRSYKVIPQVDRRYRLDQEMLENYYIRTGAGELIPLATLISFEETVEPSKRV 792

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                         +        A   + +  ++             +     + S  ++ 
Sbjct: 793  QFQQLNSLTVQGVMAPGVAVGEALAYLEDKAREIFPSAFSWDYAGESRQYTQQGSALMVT 852

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                    S + + + +  +F+ W   +  + ++ + I   L F  L     N+     +
Sbjct: 853  -----FFFSLLVIYLVLAAQFESWRDPVIILMSVPMSIAGALVFLTLGFATVNIYTQVGL 907

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG    + +++ +    N       +  +  ++K+ +  L   + T+++  ++++P+
Sbjct: 908  ITLIGLIAKNGILIVE--FANQLQLQEGLDKQAAVEKASSIRLRPILMTTVSMIVAMVPL 965

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI-YDWRAKNARI 833
             +    G        + +A G+ +    ++F+   + L +  D R +   +
Sbjct: 966  LMASGPGAVSRFDIGLVVASGLGIGTLFTLFVVPAVYLLVAGDHREEKEAV 1016



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               AL     + L +        + G   NL  + A++  IG  V+D ++V + +    
Sbjct: 354 SLRAALVPAIAVPLSLIGGAFLMLVLGFSLNLLTLLAMVLAIGLVVDDAIIVVENIH--- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      S          E     +  +        P+   G   G++   FA  +A  +
Sbjct: 411 RHLEHGESRFQAAIHGARELGLPIIAMTTTLVAVYAPIGFMGGLVGTLFTEFAFTLASAV 470

Query: 806 VVAASSSIFIAAPI 819
           +V+   ++ ++  +
Sbjct: 471 LVSGVVALTLSPML 484


>gi|319781074|ref|YP_004140550.1| acriflavin resistance protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317166962|gb|ADV10500.1| acriflavin resistance protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 1057

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 55/538 (10%), Positives = 142/538 (26%), Gaps = 41/538 (7%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
            I   +   +   +A       +  +  P       +           L+ +    +   
Sbjct: 14  TISVLVFLLLAGWVA----YQSTPKEAEPDV--PIPMMY-------ISLIYQGISPEDSE 60

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             L    +     LK       +  Q    + + F                +Q   + L 
Sbjct: 61  RLLLRPMESKLKSLKGLKEMRSAAFQGGGYVLVEFQPQTNLATALQDTRSKVQDGKADLP 120

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              ++ ++      E  +++   + +              R+  D+I      ++     
Sbjct: 121 QAAEEPVVTEVNISEFPVLVVTLSGELPERVLTA----AARELRDRIEEVPGVLEGSLQG 176

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                +    DP +L        ++       N+            + +     L+E   
Sbjct: 177 SRDDLVEVVIDPMKLSSYGLQLDQLIGAVGASNSLVAAGNIEGSEGKYAVKVPSLIETPE 236

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           +++                     +                 I    A       L    
Sbjct: 237 DVAA--------------------LPVVAGPNAVVQAKDIATIRSTFADATTITRLNGKP 276

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                   +   +   T+     ++                +             +    
Sbjct: 277 AIAIEVKKRIGANLIDTLAKVREVSDAYVKTMPQGMNVTYTQDKSVFVNQLLGDLQNHVM 336

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           I   LV IV+   +      L+   +I  + ++ + LL+++G T+ +  +  ++L +G+ 
Sbjct: 337 IAVILVFIVILYALSGR-ASLLIGLAIPSSFLIGILLLAMMGYTINMIVLFSLILAVGML 395

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGA 484
           VD  I+V E       +      +  +   R    +  + +T + A   L F+    G  
Sbjct: 396 VDDAIIVTEFAERRMSEGMPKAEAFALAAKRMAGPVIAATMTRIAAFSPLLFWPGIIGDF 455

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
           ++   IT+ +++  SM  A+     +     +  +    D        ++   +    
Sbjct: 456 MKYMPITLIVTLSASMLYALVFAPTLGAIFAKAPEHHEDDNRDGWYMAIVKQAVRFPI 513



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 80/242 (33%), Gaps = 7/242 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKK 640
            V     V  +   + + S      +    +G+    + ++ + G ++  T   +  V  
Sbjct: 243 VVAGPNAVVQAKDIATIRSTFADATTITRLNGKPAIAIEVKKRIGANLIDTLAKVREVSD 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
              + +P                +L+      V+I+ I + I I        +L     +
Sbjct: 303 AYVKTMPQGMNVTYTQDKSVFVNQLLGDLQNHVMIAVILVFIVILYALSGRASLLIGLAI 362

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                  +   A+ G   N+  + +++  +G  V+D ++V +   +  +  +  +   + 
Sbjct: 363 PSSFLIGILLLAMMGYTINMIVLFSLILAVGMLVDDAIIVTE-FAE--RRMSEGMPKAEA 419

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              +     G  +  +M    +  P+  W    G  +    I +   +  +   ++  A 
Sbjct: 420 FALAAKRMAGPVIAATMTRIAAFSPLLFWPGIIGDFMKYMPITLIVTLSASMLYALVFAP 479

Query: 818 PI 819
            +
Sbjct: 480 TL 481



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 38/244 (15%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +    V +Q           V   V K ++E+   S I+       + S E         
Sbjct: 788  DGARTVVVQANVAAGAQVAAVQAEVTKAVSEMDLGSGIRWKLAGSNEDSAEASAFLGKAF 847

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA-------LFGIEFNLTAVAAV 726
              +   + + + ++F  + ++  + + +  +  T+G F         FGI  +   V A+
Sbjct: 848  GAAIFLIFLVLLMQFNKFTSVLMVLSCV--VMATVGVFLGLLITGETFGIVMSGIGVIAL 905

Query: 727  LTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
                G  VN+ +V+   YDR+R+            D + ++  E     V T+++A + V
Sbjct: 906  A---GVVVNNNIVLIDTYDRLREE------GWDKMDAVLQTCRERARPVVLTAVSAILGV 956

Query: 784  LPMAV-WGGSVIG--------------SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            LP+A   G  +                S +  + FG+  A   ++ +   +L+     R+
Sbjct: 957  LPIAFGLGLEIFHHETTINAPSTQWWISLSSAIVFGLSFATLLTLVVTPSMLMIF--TRS 1014

Query: 829  KNAR 832
            KN+R
Sbjct: 1015 KNSR 1018


>gi|282917903|ref|ZP_06325653.1| membrane transporter [Staphylococcus aureus subsp. aureus D139]
 gi|282318188|gb|EFB48548.1| membrane transporter [Staphylococcus aureus subsp. aureus D139]
          Length = 829

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 75/592 (12%), Positives = 197/592 (33%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ N +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYNVSQTSLKDDSRDNIKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYVKGIGLAVGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG-------- 577
           N                  A      I ++ +   +  +     + G+            
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 578 --------------GIQLGVLANRP---------VDLSVVRSNLESLQIGDISFQNFDGE 614
                          + + V   +            +     + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L   + + + +      ++N    K+          +    +
Sbjct: 79  TKDDGIVQPSITKDIKKTLDDFKKDDKHIDKISDPYENKQISKDKTTAFADITYNVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +      + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDDSRDNIKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYVKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKRIKVNK 338


>gi|292571764|gb|ADE29679.1| Hydrophobe/amphiphile efflux-1(HAE1) familyprotein [Rickettsia
           prowazekii Rp22]
          Length = 1008

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 78/625 (12%), Positives = 172/625 (27%), Gaps = 53/625 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   + ++L  MI  +G +     F  +  +   P                   + +E  
Sbjct: 9   KRPIFAIVLSLMIVALGGI-----FFTKLQIRGAPDISVPI-------------INVEAH 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +   +    +++   +K             + ITLSF  S   E   + V  
Sbjct: 51  YAGADALYMEQEITTRIEKVLKTVKNLDYITSQSSTGSSSITLSFRLSTDIELALNDVRS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  ++     D K   +          +      DQ     +E +  +      Q+   
Sbjct: 111 KISDISYMFPQDMKAPSVTKLDTDNFPSLFISIESDQYSD--LELTQIVSDNIQAQLDKL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           ES  +          +  E D  +L Q   +  ++       N      M   +      
Sbjct: 169 ESVGKSQIYGGREYIMRIEPDFKKLYQYKISLLEIEAAIKEQNKDYPAGMIKTKSNNFIV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    E                      +I                 I       
Sbjct: 229 TLTGSLSAPEEFG--------------------NIILKVQNGCIIKLRDITKISLTSPDE 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +++ +              ++A         +          
Sbjct: 269 DIIFRYNGKNSIALGLIKESKANIIDLSNEVTKELERIKASIPKGISISIAYDGAKPLKA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V ++ +   K  L+   +I +++I T +++   G ++ + ++
Sbjct: 329 SIYAVFKTMFEALILVVLVTYLFLASAKISLIPFVTIPVSLIGTFSIMYAFGFSINVFTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I++ E I   N        +  +        I    IT     V +
Sbjct: 389 LAMILAIGLVVDDAIVMLENIFRYNEMGYKPMEAAMLASKEIGFAIITMTITLAAVFVPI 448

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPL 528
            F  G   +    FA T+   +L S F A+++   M   ++        K +        
Sbjct: 449 GFIEGFIGKLFIEFAWTLAFCVLFSGFVAVTLTPMMSSHMVTKHNTNLAKFLVRFHDMLQ 508

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    + +     + + + I   F +  I    T       +  G +Q+ +     
Sbjct: 509 FVQNRYIYYLKLALDNKKKFVIIILSSFIVLIISFKLTKKTFVPQEDDGFLQVFLKGPEG 568

Query: 589 VDLSVVRSNLESLQIGDISFQNFDG 613
             L      ++  +    ++++  G
Sbjct: 569 ASLESSIKVVKEAEQILANYKDIFG 593



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 84/245 (34%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I L V     + L  +     +    DI F+        L  ++    + +  +  + 
Sbjct: 241 GNIILKVQNGCIIKLRDITKISLTSPDEDIIFRYNGKNSIALGLIKESKANIIDLSNEVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              ++I   +P     +    G K  +  I      +  + I +++           +L 
Sbjct: 301 KELERIKASIPKGISISIAYDGAKPLKASIYAVFKTMFEALILVVLVTYLFLASAKISLI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T      FG   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 361 PFVTIPVSLIGTFSIMYAFGFSINVFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGY 417

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +  ++      +P+     + G +   FA  +AF ++ +   +
Sbjct: 418 KPMEAAMLASKEIGFAIITMTITLAAVFVPIGFIEGFIGKLFIEFAWTLAFCVLFSGFVA 477

Query: 813 IFIAA 817
           + +  
Sbjct: 478 VTLTP 482



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 93/271 (34%), Gaps = 11/271 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             ++ L F       I     I +    N  + L  + +  E + +      N        
Sbjct: 744  YNVILQFNQKDRQDISDLSKILIRTKNNNMLPLESIANIREKISLKSYYHYNNSKSVTIS 803

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              L      + A   + ++  + +     +           ++   +    ++  + S +
Sbjct: 804  SDLAPDVKINDAINIINKIAAQLLDPNNTIIEYIGEIKQMKEVDNNI----LITFVFSLV 859

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + +  +F+ +   L  +  +   IT  +    L G   N+ +   ++TLIG    + 
Sbjct: 860  FIYLVLAAQFESFTDPLLILLAVPFSITGGVLTLWLAGNSLNMYSNIGLITLIGLVTKNA 919

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ +      +L    ++ R+ I +S    L   + T++AA +  LP+      G +  
Sbjct: 920  IMIVEFAN---QLRAKGLNVREAIIESSKLRLRPILMTTVAAIVGALPLVFADGAGAASR 976

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             S    +  G+ +    +IF    I      
Sbjct: 977  NSIGFVIVGGLSIGTIFTIFAIPVIYQTFKK 1007


>gi|134299526|ref|YP_001113022.1| preprotein translocase subunit SecD [Desulfotomaculum reducens
           MI-1]
 gi|134052226|gb|ABO50197.1| protein-export membrane protein SecD [Desulfotomaculum reducens
           MI-1]
          Length = 413

 Score =  137 bits (344), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 35/176 (19%), Positives = 81/176 (46%), Gaps = 4/176 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + + K I    +  IA+LI++   ++    + A   L++     +  FA   + 
Sbjct: 236 GPSLGADSLSKSIKAAAVGLIAILIFMLGYYRLP-GMVANFALVVYGVIVIAIFAAMHVV 294

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +AA +  +G +V+  V++++R+++ +K   +  S R  I+          + +++
Sbjct: 295 LTLPGIAAFVLSMGMAVDANVIIFERIKEELK---SGKSLRSSIESGFKRAFVAVLDSNV 351

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              I+   +  +G   I SFA+ ++ GI+ +  ++I     +L        KN ++
Sbjct: 352 TTLIAAAVLFYFGSGPIKSFAVALSVGILTSMFTAITFTRWVLHLTASTGIKNTKL 407



 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 130/399 (32%), Positives = 220/399 (55%), Gaps = 26/399 (6%)

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           V      V            L       +++        +V    ++Q +E I +R++  
Sbjct: 24  VQPIFPNVKWLPLTKEIPLGLDLQGGVHVALEAHDTEQAKVNDENMKQLLEAIERRVNAF 83

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
           G+SE  +Q+ G  RI+++L G +DP +  + +  TA + F                    
Sbjct: 84  GVSEPIVQQEGDRRIIVELAGIKDPDQAVRDIVKTAFLEF-------------------- 123

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                    + K  ++G  L  A  + DP T+   V + F++ G ++F E T  N+GK +
Sbjct: 124 ------KTEDGKTILTGADLKNAVESSDPVTNVVEVGLEFNKEGTQKFAEATSANVGKRI 177

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A++LDG VL  PV+N+ I  GKA+I+G   +E A  +A +L++G+LP+K  ++E+R VG 
Sbjct: 178 AIILDGNVLQTPVVNEPITGGKARITGYANLEEAHTIAVLLKSGALPLKTEVIEKRTVGP 237

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            LG+DS+ K   A   GL+ I++FM+  Y   G+VA+F++ +  ++ +A+ + +   LTL
Sbjct: 238 SLGADSLSKSIKAAAVGLIAILIFMLGYYRLPGMVANFALVVYGVIVIAIFAAMHVVLTL 297

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           P IA  VL +G+AVD+N+++ ERI+EE +  +S+  S++ GF RA+  + DSN+T LIA 
Sbjct: 298 PGIAAFVLSMGMAVDANVIIFERIKEELKSGKSLRSSIESGFKRAFVAVLDSNVTTLIAA 357

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            VLF+FG G ++ FA+ + + IL SMFTAI+  R ++  
Sbjct: 358 AVLFYFGSGPIKSFAVALSVGILTSMFTAITFTRWVLHL 396



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/390 (12%), Positives = 122/390 (31%), Gaps = 26/390 (6%)

Query: 27  LPQSMLDRFPSAMP-KNRISLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLK 82
                +      +P    I LGLDL+GG H+ LE    ++    +  ++   + +   + 
Sbjct: 22  FSVQPIFPNVKWLPLTKEIPLGLDLQGGVHVALEAHDTEQAKVNDENMKQLLEAIERRVN 81

Query: 83  KEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
             G+    ++Q  + +I +  A  +  +     V   ++    +   +  K +L      
Sbjct: 82  AFGVSEPIVQQEGDRRIIVELAGIKDPDQA---VRDIVKTAFLEFKTEDGKTILTGAD-- 136

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
               + +       +++ +E  +E  ++   +   +  +        I++     Q P  
Sbjct: 137 ----LKNAVESSDPVTNVVEVGLEFNKEGTQKFAEAT-SANVGKRIAIILDGNVLQTPVV 191

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
              + G  A+++ +  L        +     L        ++E +    G  L   + + 
Sbjct: 192 NEPITGGKARITGYANLEEAHTIAVLLKSGALPL---KTEVIEKRTV--GPSLGADSLSK 246

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
             K     +      M           N    +  V+   +  A  +   +P   A +  
Sbjct: 247 SIKAAAVGLIAILIFMLGYYRLPGMVANFALVVYGVIVIAIFAAMHVVLTLPGIAAFVLS 306

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
                 A ++        L    ++      G      ++       +    +      +
Sbjct: 307 MGMAVDANVIIFERIKEELKSGKSLRSSIESGFKRAFVAVLDSNVTTLIAAAV------L 360

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGAT 411
            Y   G +  F++ L+V +  ++ + +  T
Sbjct: 361 FYFGSGPIKSFAVALSVGILTSMFTAITFT 390


>gi|325274975|ref|ZP_08140975.1| multidrug efflux protein [Pseudomonas sp. TJI-51]
 gi|324099882|gb|EGB97728.1| multidrug efflux protein [Pseudomonas sp. TJI-51]
          Length = 1014

 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 58/469 (12%), Positives = 138/469 (29%), Gaps = 29/469 (6%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           +         +  +  +         RQ  + I++        + +
Sbjct: 45  ITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSVISIYARIGADSDRL 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++      V +KL  + +  +L        +++      +Q+ +   + +  + R   
Sbjct: 105 FTELLAKANEVRNKLPQNAEDPVLSKEAADASALMYISFYSEQMSN--PQITDYLSRVIQ 162

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++       +       +  +    DP +L       + ++      N           
Sbjct: 163 PKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLAASDVTDAVRRYNFLSAAGEVKGE 222

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           ++  S      ++                      +    +     G  R        + 
Sbjct: 223 YVVTSINASTELKSA--------------------EAFAALPVKTSGDSRVLLGDVARVE 262

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                                       +    I+        L +         +    
Sbjct: 263 MGAENYDTVSSFDGTPSVYIGIKATPAANPLEVIKEVRRGMPDLESQLPSALKVSIAYDA 322

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      +V++V+F+ +   +  L+   +I L++I  L  + ++G +
Sbjct: 323 TLFIQASIDEVIKTLGEAVLIVILVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYS 382

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L L ++  +VL IGL VD  I+V E I     + QS F +   G       +    IT  
Sbjct: 383 LNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGQSPFDAALEGAREIAMPVVSMTITLA 442

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
                + F     G   + FA+T+  +++IS   A+++   M   ++R 
Sbjct: 443 AVYAPIGFLSGLTGALFKEFALTLAGAVVISGIVALTLSPMMCALLLRR 491



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 86/256 (33%), Gaps = 8/256 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    +  V L  V       +  D           ++        + +   + +    
Sbjct: 244 PVKTSGDSRVLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLEVIKEVRRGM 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAIT 698
             +   +P +   +         +  I + I  +     I +L+           L  + 
Sbjct: 304 PDLESQLPSALKVSIAYDATLFIQASIDEVIKTLGEAVLIVILVVFLFLGALRSVLIPVV 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +   L F  + G   NL  + A++  IG  V+D +VV + +    +      S  
Sbjct: 364 TIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHIEEGQSPF 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
           D   +   E     V  ++       P+       G++   FA+ +A  +V++   ++  
Sbjct: 421 DAALEGAREIAMPVVSMTITLAAVYAPIGFLSGLTGALFKEFALTLAGAVVISGIVAL-T 479

Query: 816 AAPILLFIYDWRAKNA 831
            +P++  +   R +N+
Sbjct: 480 LSPMMCALLLRREQNS 495



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 59/157 (37%), Gaps = 6/157 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALLPLFLGLSSMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N       +  R+ I+++    L   + T+ A    ++P+ +    
Sbjct: 911  ISKHGILIVE--FANQLRDELGLGAREAIEEAAAIRLRPVLMTTAAMVFGMVPLILATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G          +A G+ +    ++F+   I   +   
Sbjct: 969  GAVSRFDIGAVIATGMSIGTLFTLFVLPCIYTLLAHK 1005


>gi|260893740|ref|YP_003239837.1| acriflavin resistance protein [Ammonifex degensii KC4]
 gi|260865881|gb|ACX52987.1| acriflavin resistance protein [Ammonifex degensii KC4]
          Length = 1051

 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 64/530 (12%), Positives = 157/530 (29%), Gaps = 48/530 (9%)

Query: 1   MRNNPWLV-------ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGG 53
           M    + +        L   I   GL            L+ FP   P             
Sbjct: 1   MNWPAFAIRHKYTVFALTLAIVFFGLYA-----KKAIKLELFPDTSPPMV---------S 46

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              V        V   +    +E  + ++       S +   + + + F   +     A 
Sbjct: 47  VITVYPGVAASDVAREVNKPLEEELATIEGVKKISSSSQDGLSIVRVEFNYGKDLNLAAV 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  +   L    ++  ++  + ++  ++    + D +    I        +  + 
Sbjct: 107 DVQNAISRIKGSLPAGIQEPQVLKFSSQDKPVLTLALSSDSL--DLIALRTLADNEIKNA 164

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           + + +             Q+    D  RL  L  +  ++       N S        +  
Sbjct: 165 LQLVDGVGAVDVLGGYRRQINVYVDRHRLEALNLSLERIVAAIGATNISLPAGRVTQQEQ 224

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                      D  E+                     +I  +  G           I   
Sbjct: 225 EYLLRVTQERLDPEEL--------------------ANILLESRGGHNIHLKDVARIEDS 264

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                                 K + +    I+      A L      +K  + ++ ++ 
Sbjct: 265 SQEQRSSYRFNGKNSVAIQIIKKREANTVEVIDKVKAKLAELEKQFPEVKFAVADDDSIF 324

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                +++       +    +I+L + ++     +V   S+ L+++  +AL+   G +L 
Sbjct: 325 TLQVVENMAASVRDALIFTTVIIL-LFLISLNESVVVALSMPLSLLGAIALIKATGLSLN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALI 472
           + +++ ++L +G+ VD +I+V E I   + +  + +  +   G       +     T + 
Sbjct: 384 IITLSALILSVGIVVDDSIVVAENIMRHHHELGKDIRTAAIDGAKEIMLPVVAGTATIVA 443

Query: 473 ATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
             V L   G   G      A T+  +I  S+  +++I+  + + +   + 
Sbjct: 444 VLVPLLLIGGFVGQMFSPLAKTLIYAISCSLLVSLTIIPLLTVMLGGKRW 493



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 79/236 (33%), Gaps = 6/236 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + +E       S   F+G+ +  +++  +   +  +       K    E           
Sbjct: 259 ARIEDSSQEQRSSYRFNGKNSVAIQIIKKREANTVEVIDKVKAKLAELEKQFPEVKFAVA 318

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                 + +++      V  + I   + I +       ++    ++ L +   +      
Sbjct: 319 DDDSIFTLQVVENMAASVRDALIFTTVIILLFLISLNESVVVALSMPLSLLGAIALIKAT 378

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G+  N+  ++A++  +G  V+D +VV + +      +      R        E +   V 
Sbjct: 379 GLSLNIITLSALILSVGIVVDDSIVVAENI--MRHHHELGKDIRTAAIDGAKEIMLPVVA 436

Query: 775 TSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +      ++P+ + G   G +    A  + + I  +   S+ I   + + +   R
Sbjct: 437 GTATIVAVLVPLLLIGGFVGQMFSPLAKTLIYAISCSLLVSLTIIPLLTVMLGGKR 492



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 70/158 (44%), Gaps = 7/158 (4%)

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             ++++ + + + +  +F+ +   +  + ++ L +        L G   +L A+  ++ L+
Sbjct: 869  ALLVAVVMVYLLLVAQFRSFIHPVTIMMSIPLVLFGVALALLLSGKSVSLPAILGLILLV 928

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---A 787
            G  V + +V+ + +   ++     ++  + I +++       + T++A  + +LP+    
Sbjct: 929  GTVVRNSIVLVEFI---IRSREAGMARDEAIVEAVRVRFRPIMMTALACIVGMLPLALEW 985

Query: 788  VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G       AI +  G++VA   ++ +   +   + D
Sbjct: 986  ALGSERFSPLAITVIGGMLVATLLTMVVIPVVYSLLDD 1023


>gi|83594259|ref|YP_428011.1| acriflavin resistance protein [Rhodospirillum rubrum ATCC 11170]
 gi|83577173|gb|ABC23724.1| Acriflavin resistance protein [Rhodospirillum rubrum ATCC 11170]
          Length = 1009

 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 67/586 (11%), Positives = 165/586 (28%), Gaps = 40/586 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+  +   GL+      +        P              + G+       
Sbjct: 11  RNPIPPIVLFLALTIAGLIAFTKLPVTSMPSVIVPVVSVTIS-------QPGAS------ 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + L+       ++ +  +  T+ F      +         +  
Sbjct: 58  -PTEIESQITRRVEGALAGLRGVKHITSTISEGTSLSTVEFHLETDFDRAMSDTRDAITN 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L     +  +        +++    +++     A + +  I       +       
Sbjct: 117 IRDQLPRSILEPQVQRVEIDGGALL--AFSVEAPEMRAEDLAWFIDDTVSRNLLAVPGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  ++ ++    DP++L     T A++S    L                       
Sbjct: 175 SVRRQGGVVHEITVTLDPAKLAAFSVTAAEISRQLAL--------------------TTI 214

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     I G            ++   + DI       R         +    A      
Sbjct: 215 DLPGGRLIEGEREYSLRTLGGAQSASALRDIWIGLGSGRGVRLGDIAEVTDGGAEARSIT 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +       +A+ +   T+  +   A      + P          V     S   
Sbjct: 275 RLDGKPVV-TFAVFRAKGASEITVGESVKRALEDSQAADPFVTYKEIFSLVDFTQTSYQS 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++ +F+ +   +   +A  +I L++I T  +L  LG +L   S+  I 
Sbjct: 334 TLYVFFEGAILTILTVFLFLRDRRATALAALTIPLSIIPTFLVLYFLGFSLNFVSLMAIS 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I     + +  + +  +        +  +        + + F G
Sbjct: 394 LVTGVLVDDAIVEIENIHRHMAQAKGPYDAAMIAADEIGLAVVATTAVICAVFMPVSFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+ ++   S+  A  +   +  + ++    +          +      
Sbjct: 454 GAAGKFFIQFGVTVSVAAFFSLMVARLLTPMIAAYGLKAPAHRDDKPGLWGLRYRHLVVW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            +           +S++ S   +  L T  L Y    +  + + + 
Sbjct: 514 TLDNRGKTLGIAALSVVLSFGLVPYLSTGYLPYEDYAQSSMTIELP 559



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 63/161 (39%), Gaps = 7/161 (4%)

Query: 664 ELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           +L  + +  +    + +  I + +   W      +  L L I        L   + N+ A
Sbjct: 834 DLFSRFLTAIGAGLMMVYAIQVLLYKDWIQPFTRMAALPLSIGGAFLALVLTNTDLNMPA 893

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
              +L L+G +  + +++ D M + ++     +  R+ I +S        + TS+A    
Sbjct: 894 AIGILMLMGIADKNSILLVDYMVERIRQ---GVPRREAIIESCAVRARPIIMTSLAMLAG 950

Query: 783 VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++P+ +      +     A+ +  G++ + + S+     + 
Sbjct: 951 MVPIVLGIGLDTAFRAPMAVAVIGGLISSTALSLVFVPVLF 991



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 68/231 (29%), Gaps = 4/231 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  +    +         +            + +    +     ++   +      P 
Sbjct: 255 VRLGDIAEVTDGGAEARSITRLDGKPVVTFAVFRAKGASEITVGESVKRALEDSQAADPF 314

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
            T +    +             V    + + +L              A  T+ L I  T 
Sbjct: 315 VTYKEIFSLVDFTQTSYQSTLYVFFEGAILTILTVFLFLRDRRATALAALTIPLSIIPTF 374

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                 G   N  ++ A+  + G  V+D +V  + +    +    +    D    + +E 
Sbjct: 375 LVLYFLGFSLNFVSLMAISLVTGVLVDDAIVEIENIH---RHMAQAKGPYDAAMIAADEI 431

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               V T+       +P++  GG+    F I     + VAA  S+ +A  +
Sbjct: 432 GLAVVATTAVICAVFMPVSFMGGAAGKFF-IQFGVTVSVAAFFSLMVARLL 481


>gi|23308861|ref|NP_600870.2| preprotein translocase subunit SecD [Corynebacterium glutamicum
           ATCC 13032]
 gi|21324427|dbj|BAB99051.1| Preprotein translocase subunit SecD [Corynebacterium glutamicum
           ATCC 13032]
          Length = 644

 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 112/590 (18%), Positives = 216/590 (36%), Gaps = 65/590 (11%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + L+ +I   G+       L        P         LG+DL+GG+ + L   
Sbjct: 21  RWPKRAIALFVLIVV-GVYAL---VLLTGDRSATP--------KLGIDLQGGTRVTLVPQ 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS--RFKENIADKVTLFL 119
             D     L      L + +   G+   S+    N + ++         +++     L  
Sbjct: 69  GQDPTQDQLNQARTILENRVNGMGVSGASVVADGNTLVITVPGENTAQAQSLGQTSQLLF 128

Query: 120 QGVNSKLNVDPK--------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
           + V      D                +  ++T  +   S+      +    +   E++ E
Sbjct: 129 RPVGQAGMPDMTTLMPELEEMANRWVEYGVITEEQANASLEEMNTAVASTTAVEGEEATE 188

Query: 166 IIRQRIDQIGISESTIQRLGSHRILIQLPGE------QDPSRLRQLLGTTAKMSFHKVLP 219
                +    + E       + R               DP+ ++    +  + +  ++ P
Sbjct: 189 PEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPT-VQIAASSLMQCTTDEMDP 247

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLV------------EDKVEISGIHLNGATANF------ 261
                     +     + G  Y++            E+   ++G  ++            
Sbjct: 248 LAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPITGGFNAQ 307

Query: 262 -DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQI 319
                          E G+  +  +T   + + +A+ LD +V++APVI  A        I
Sbjct: 308 SGQMEISFAFKSGDGEEGSATWSSLTSQYLQQQIAITLDSQVISAPVIQSATPVGSATSI 367

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTCAIVAGLV 373
           +G+FT   A  LA  LR G+LP+               V   LG+ S+  G  A + G+ 
Sbjct: 368 TGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLKAGLIAGIVGIA 427

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLS----LLGATLTLPSIAGIVLGIGLAVD 429
           L+ +F+   Y  +G V+ F++F   +L   LL      +G +L L  IAG+++GIG   D
Sbjct: 428 LVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLIIGIGTTAD 487

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           S ++  ERI++E R+ +S   ++   +  A  TI   N+  L+  +V++    G V+GFA
Sbjct: 488 SFVVFYERIKDEIREGRSFRSAVPRAWESAKRTIVTGNMVTLLGAIVIYLLAVGEVKGFA 547

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
            T+GL+ +  +     I   ++I   R        +N + R   + +   
Sbjct: 548 FTLGLTTVFDLVVTFLITAPLVILASRNPFFAKSSVNGMGRVMKLVEERR 597



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 73/214 (34%), Gaps = 8/214 (3%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +     Q         +                   T  V P +    ++ G++ 
Sbjct: 362 GSATSITGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLKAGLIA 421

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA----LFGIEFNLTAVAAVLT 728
            I+    + I+++  ++  F   ++ TL        G         G   +L  +A ++ 
Sbjct: 422 GIVGIALVAIFVFAYYRV-FGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLII 480

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG + +  VV Y+R++  ++      SFR  + ++        V  +M   +  + + +
Sbjct: 481 GIGTTADSFVVFYERIKDEIRE---GRSFRSAVPRAWESAKRTIVTGNMVTLLGAIVIYL 537

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                +  FA  +    V     +  I AP+++ 
Sbjct: 538 LAVGEVKGFAFTLGLTTVFDLVVTFLITAPLVIL 571


>gi|226320668|ref|ZP_03796226.1| acriflavine resistance protein [Borrelia burgdorferi 29805]
 gi|226233884|gb|EEH32607.1| acriflavine resistance protein [Borrelia burgdorferi 29805]
          Length = 1071

 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 166/514 (32%), Gaps = 33/514 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K       +  +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSTSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKIPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVINEIEKLKLSMPKDMKLEIASDSTDFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+     +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFFLMYFANISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G   + F  T+ +S+ +S+  AI +V  +
Sbjct: 462 ELGVYGDFFKDFTFTIVISLGVSLLVAIFLVPVL 495



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ + +  + +   +   +   + L          T+V   V   I   VP       +
Sbjct: 799  SSIATFEKTNKAESIYRENQALTIYLNAGISPDDNLTQVTAKVVDFINNKVPHKEGITLK 858

Query: 656  IVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            + G       I     + ++++ I +   +  +F+ +      I T+ L     +    L
Sbjct: 859  VEGEYNEFSNIMNQFKIIIMMAVIVVFGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFL 918

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++ A   +L L+G  VN  +V+ D       L       R+ I +S    L   +
Sbjct: 919  AGEKLSIFAAIGMLMLVGVVVNTGIVLVD---YTGLLIKRGFGLREAIIESCRSRLRPIL 975

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +S+ + I ++PMA     G  ++   A     G+  +   ++F    +     +
Sbjct: 976  MSSLTSIIGLIPMAFSSGSGNELLKPIAFTFIGGMTASTFLTLFFIPMLFEIFSN 1030



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V+  ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVINEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMKLEIASDSTDFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFFLMYFANISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F   +   + V+   +I
Sbjct: 430 SSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFTFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511


>gi|21242805|ref|NP_642387.1| transport protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21108290|gb|AAM36923.1| transport protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 1028

 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 85/646 (13%), Positives = 187/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATADGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V      D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AVRDDFPEDLQRFQVFKWSSSDEPVLKVRLASQTDLTGAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S                         N 
Sbjct: 172 AKVEISGAPPNEVEIAIAPDRLTAHDLSLNDLSERL-------------------GKLNF 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +   +++ +G  +            +    +      A+         +      +  G
Sbjct: 213 SVSAGQIDDNGQRIRVQPIGELRDLQELRELVL----NAKGVRLGDIAEVRLKPTRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +     + A      +RA      + +    N   A   S 
Sbjct: 269 RRLDGRPAIGLDVYKERSANLVEVSKAALKEVEDIRAQPALRDVQVKVIDNQGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 AELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPDQPQRAALLGTRSVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     + S            
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTSEHGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G D      +            +
Sbjct: 509 ATLLAWTLAHRGWSVAGIILVSAISLVPMKLTKIDMFGGDGGNEAFIQYQWKGSYTREQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +                G +   T     VK 
Sbjct: 569 GEEIGRVENYLEANRAKYHITQIYSWFSEVEGSNTVVTFDASKVKD 614



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 86/237 (36%), Gaps = 11/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI-VPLSTIQNTE 655
            +L  +QI   + Q     +   + ++    + V        ++  +  +  P       +
Sbjct: 768  SLVEVQIRPAATQIGRTNRQTTLTIKANLAEKVTVPEARAAMEAPLKAMRFPAGYSYTFD 827

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E + + +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 828  GGDYQNDGEAMGQMVFNLVIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 887

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +     L    +     + +   E L   + 
Sbjct: 888  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN---NLRRRGMGRTQALVEGSRERLRPIMM 944

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T   A ++++P+          G      A  +A G+  +   S+     I   + D
Sbjct: 945  TMGTAILAMVPISLTSTTMFSDGPPYFPMARAIAGGLAFSTVVSLLFLPTIYAILDD 1001



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +    +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDIRAQPALRDVQVKVIDNQGKAVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPDQPQ-----RAALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|91776906|ref|YP_546662.1| RND multidrug efflux transporter MexB [Methylobacillus flagellatus
           KT]
 gi|91710893|gb|ABE50821.1| RND multidrug efflux transporter MexB [Methylobacillus flagellatus
           KT]
          Length = 394

 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 40/416 (9%), Positives = 105/416 (25%), Gaps = 29/416 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
              G++        +  ++ +P+                  +         V   +    
Sbjct: 1   MLAGIVSIF-----RLAVNHYPNVAAPAI---------AITVTYPGASAQTVQDTVVQVI 46

Query: 75  DELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           ++  + L        +     +  IT++F      +    +V   LQ     L  + ++ 
Sbjct: 47  EQQLNGLDGLRYITSTSNSDGSMNITVTFDQGTNPDIAQVQVQNKLQLATPLLPEEVQRQ 106

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +         ++++    +       +    +     D I  ++     +        +
Sbjct: 107 GIRVAKYSVNFMMVAVLVSEDGRWDNADLGNYVGSYLQDPIVRTKGVGDFIVFGSP-YAM 165

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP++L     T + +       N        G             +  K       
Sbjct: 166 RIWLDPAKLYNFSLTPSDVMTAIEQQNVQVSMGQLGGLPTAKGVQLNATIIGK------- 218

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                        +    +        +        +G                 +    
Sbjct: 219 ------MRMKTAEEFNEILVKVNADGSQVRLKDIAEVGLGSQNFAIAGKFDGKPASGLAI 272

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
                 +   T        + L                      S      T      LV
Sbjct: 273 RLATGANTLETAAAIHETISKLEPFLPAGVKIYYPYETAPKVTASIEAIIHTLVEAIILV 332

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
            +V+F+ +   +  ++   ++ + ++ T+++L   G ++ L ++  +VL IGL VD
Sbjct: 333 FVVMFVFLQNFRATIIPTIAVPVVMLGTMSVLYAFGYSINLITMFALVLAIGLLVD 388



 Score = 44.3 bits (102), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/110 (13%), Positives = 39/110 (35%), Gaps = 3/110 (2%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + A    +  ++  +   V +     T          +I   +  +I+  + M +++ 
Sbjct: 282 ETAAAIHETISKLEPFLPAGVKIYYPYETAPKVTASIEAIIHTLVEAIILVFVVMFVFLQ 341

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
               +   +     + + +  T+     FG   NL  + A++  IG  V+
Sbjct: 342 ---NFRATIIPTIAVPVVMLGTMSVLYAFGYSINLITMFALVLAIGLLVD 388


>gi|206563273|ref|YP_002234036.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
 gi|198039313|emb|CAR55278.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
          Length = 1055

 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 73/636 (11%), Positives = 171/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  P+                  ++   
Sbjct: 8   LRRPYTFIVMAIMIVL-----ATPLALMRTPVDVLPAINIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSFL-----KKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           + + F    +      +   +             +       + +        +    + 
Sbjct: 50  NYNGFSATEMTNRITSVHERVLTTTVNNIQHVESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +   +   +     Q+ 
Sbjct: 110 VSSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LADIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  L     T A +       N         +     
Sbjct: 168 TVPGAQIPFPYGGRPRVVAIDLDPQALLAKGLTPADIVNAVNAQNLVLPTGTAKMGQTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +I                     D+    +     +     ++    A
Sbjct: 228 RIDTNASADTVADI--------------------NDLPVQTVNGATTYLREVASVRDGFA 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLISILKSGDASTLKVVSDLKALLPKVIPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTNLHDAILEGAGEIAVPALVSTLCICIVFV 447

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + + R ++  +   +  SRF 
Sbjct: 448 PMFFLTGVARFLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPQQAHTGADHSASRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I       F R R W + +  +  +              +       LG       D  
Sbjct: 508 RIHHAFNHAFERLRAWYIVLLSILLVRRRFYALCFLGFCVLSTGLVFMLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P D 
Sbjct: 568 NIRLHMRAPTGYRIEETARLADQVERVIRETVPPDE 603



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 63/152 (41%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  ++ +     W   L    ++ L I  +L   +  G   N+  +  +   +G
Sbjct: 338 ALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + + +++ L     +  D I +   E    ++ +++   I  +PM    G
Sbjct: 398 ILVDDATVTIENIERHLHL---GTNLHDAILEGAGEIAVPALVSTLCICIVFVPMFFLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  +V A  +S  ++  ++  +
Sbjct: 455 VARFLF-VPLAEAVVFAMLASYVLSRTLVPTL 485



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  I+ +   +        + G   ++ A+   +  +G
Sbjct: 890  VAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIAWMLFVTGTHLSVPALTGAIMTVG 949

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +              ++    +   + T++A  I ++PMA+   
Sbjct: 950  VATANSILVVSFARQRLAA---GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1006

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1007 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1035


>gi|300863554|ref|ZP_07108500.1| Cation efflux system protein [Oscillatoria sp. PCC 6506]
 gi|300338421|emb|CBN53642.1| Cation efflux system protein [Oscillatoria sp. PCC 6506]
          Length = 1041

 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 64/543 (11%), Positives = 169/543 (31%), Gaps = 54/543 (9%)

Query: 1   MRNNPWLVILY--SMICCIGLL--IALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M N+     +    ++    ++        L +  LD FP+  P               +
Sbjct: 1   MLNSILKWSIAQRWLVVIGAIIVTFLGSYNLTRMPLDVFPNFAPP-------------QV 47

Query: 57  VLEVDEDDFVNGFLQMYSD-ELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIA 112
            ++ +        ++      + S +           S     + + + F          
Sbjct: 48  EIQTEAPGLAPEEVESLITLPIESAVNGTPGVETVRSSSAVGISVVRVIFKADTDIYQAR 107

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID----QVISHAIEQSMEIIR 168
             V   LQ   +KL    ++  +   +    +I++    I     +  ++ +E    + R
Sbjct: 108 QLVAERLQQTRAKLPQGVEEPQISPVSSPIGTILMYAFTIKAEENEPKTNLMEVRRLVDR 167

Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
              +++   +   Q +     + +     DP +L     +  +++      N +  G   
Sbjct: 168 DVTNRLLAVQGISQVIAYGGDVREYQVLVDPVKLTAFNISLEEVTKVAQQSNTNASGGFL 227

Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 +       +E   E++   +                         +        
Sbjct: 228 ITPDREEIIRGVGRIETIEELAESVVT--------------------ARKGKPIKLGDVA 267

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
            +    A+      +        + + + QI               ++AG        V 
Sbjct: 268 EVKLGAAIARGDASVNGERGVILLVNKQPQIDTPTVTRAVEKAMEEVQAGLPKDVKVQVT 327

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
            R       +    + +      +V +++ M ++  +  ++   +I L++++ + +LS  
Sbjct: 328 FRQESFIDSALENVRDSLRDGIIIVSVIMLMFLMNWRTTVITLSAIPLSILIGMLILSWF 387

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYST 462
           G  +   ++ G+ + IG  VD +I+  E      +KNQ        F  +        ++
Sbjct: 388 GEGINTMTLGGLAVAIGSVVDDSIVDMENCYRGLQKNQLEGKPKDDFEIVYSTSVEVRTS 447

Query: 463 IFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +  S +  +I    +F      G       +   +SI+ S F A+++  A+   ++  ++
Sbjct: 448 VIFSTVIIVIVFAPIFSLTGVEGRIFTPMGVAYLVSIMASTFVAMTLSPALCAILLANRQ 507

Query: 520 MKS 522
           + S
Sbjct: 508 LPS 510



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 95/259 (36%), Gaps = 13/259 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   + + + L+ V           I+ +N          +  +   SV     +++ +
Sbjct: 782  LVDTPSGQKIPLAQVAKIEYGTGPNTINRENVSRLLVVAANVSGRDLRSVVNEIKIKVQE 841

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + I                 + ++ L+  G   +    IA+L+Y  +          +  
Sbjct: 842  QVILPSGYFIQYGGQFESEERATQNLLIFG--SLGTVIIAVLMYFAVN---SLGGAIMIM 896

Query: 700  LILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            + L +    G F++   G   ++ ++   +TL G +V + +++ D      +  +  + F
Sbjct: 897  INLPLALVGGIFSIAIGGGIISVASLVGFITLFGVAVRNGLLLVDNFN---QKVSKGMPF 953

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF 814
            + +I +   E L   + T+  + + ++P+ +    G  ++   A+ +  G+  + + ++ 
Sbjct: 954  KQVIKEGAMERLVAILMTAFTSALGMVPLVIGTGAGKEILQPLAVVVLGGLFTSTALTLL 1013

Query: 815  IAAPILLFIYDWRAKNARI 833
            +   +      +      +
Sbjct: 1014 VLPALYSLFGKFLLTKKTL 1032



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 81/259 (31%), Gaps = 7/259 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     +P+ L  V        I              L+  +    D+   TR +E   
Sbjct: 252 VVTARKGKPIKLGDVAEVKLGAAIARGDASVNGERGVILLVNKQPQIDTPTVTRAVEKAM 311

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAIT 698
           +++   +P                  +      +    I + +I +     W   +  ++
Sbjct: 312 EEVQAGLPKDVKVQVTFRQESFIDSALENVRDSLRDGIIIVSVIMLMFLMNWRTTVITLS 371

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSI 755
            + L I   +   + FG   N   +  +   IG  V+D +V  +   R  +  +L     
Sbjct: 372 AIPLSILIGMLILSWFGEGINTMTLGGLAVAIGSVVDDSIVDMENCYRGLQKNQLEGKPK 431

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSS 812
              +++  +  E     +++++   I   P+    G     F    +     I+ +   +
Sbjct: 432 DDFEIVYSTSVEVRTSVIFSTVIIVIVFAPIFSLTGVEGRIFTPMGVAYLVSIMASTFVA 491

Query: 813 IFIAAPILLFIYDWRAKNA 831
           + ++  +   +   R   +
Sbjct: 492 MTLSPALCAILLANRQLPS 510


>gi|319781562|ref|YP_004141038.1| acriflavin resistance protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317167450|gb|ADV10988.1| acriflavin resistance protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 1043

 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 66/516 (12%), Positives = 145/516 (28%), Gaps = 43/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L ++I   GL            +   P                      E  
Sbjct: 19  RRPVMAFVLNTLIAVAGLAA-----FYGVEIRELPDVDRAVVT---------VSTTFEGA 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  L    +   + +        S     +++T+ F D       A  V   +  
Sbjct: 65  AAETVDRELTDTIEGAVARVSGVKSISSSSSFGSSRVTIEFNDGVDLNVAASDVRDAVGR 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V +++        +V       +++      D       + ++ +  Q  D++       
Sbjct: 125 VANQMPDTADPPRIVKADANSDAVMRLAVTSDN--MSIQDMTVVVQDQIEDELAAVPGVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                         + D ++L  L  T A +                             
Sbjct: 183 DVQVYGDRDKIFRIDVDQNKLASLGFTVADLRAALASVAFDSPAGSITTTNQDLIVRTTA 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E   I +                                   +     V     
Sbjct: 243 DVTTPEEFENIIV------------------------GGTTRIRDVATVTLGPDVGQTTL 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A+ +            A L+          +   +     G+   
Sbjct: 279 RSDGKTGIGIGIIRQAESNTLDISTGVQAAVAKLQENLPKGMSIKITSDDAVFVKGAVHE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   +VLIV+++ +L  +  L+   S+ + +I T+A + L G ++ + ++  +V
Sbjct: 339 VEIALGLSVTMVLIVIYVFLLDWRATLIPGLSMPVAMIGTIAAIYLAGFSVNILTLLALV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E I     +      +  +G    +  +  + +T +   V + F  
Sbjct: 399 LATGLVVDDAIVVLENIVRRRNEGMGPRAAAVLGAQEVFFAVIATTLTLVAVFVPISFLP 458

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G      R F   + +S+L+S   A+++   +   +
Sbjct: 459 GQTGGLFREFGFVLAMSVLLSCVVALTLCPMLASRM 494



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/212 (12%), Positives = 75/212 (35%), Gaps = 7/212 (3%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +  ++    +++  +  ++    K+ E +P               +  + +  +
Sbjct: 282 GKTGIGIGIIRQAESNTLDISTGVQAAVAKLQENLPKGMSIKITSDDAVFVKGAVHEVEI 341

Query: 672 GVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            + +S   +LI I      W   L    ++ + +  T+    L G   N+  + A++   
Sbjct: 342 ALGLSVTMVLIVIYVFLLDWRATLIPGLSMPVAMIGTIAAIYLAGFSVNILTLLALVLAT 401

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +VV + +   ++     +  R        E     + T++      +P++   
Sbjct: 402 GLVVDDAIVVLENI---VRRRNEGMGPRAAAVLGAQEVFFAVIATTLTLVAVFVPISFLP 458

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           G        F   +A  ++++   ++ +   +
Sbjct: 459 GQTGGLFREFGFVLAMSVLLSCVVALTLCPML 490



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 64/164 (39%), Gaps = 9/164 (5%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAA 725
              +     + + +L+ +  +F+ + +   I   +  +      FAL   G   N  +   
Sbjct: 857  AMVTIFGFALVIILLVLAAQFESFVSAVIIMATV-PLGLACAIFALLLSGTSLNAYSQIG 915

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L+G    + +++ +      +L    +  R+ I+++    +   + T +   +  LP
Sbjct: 916  LVLLVGVMAKNGILIVEFAN---QLRDRGLGVREAIEQASIIRVRPVMMTMICTVLGGLP 972

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + +    G     +    +  G+ +A  S++F+     L +  +
Sbjct: 973  LVLASGAGAEARVALGWVIVGGLGLATVSTLFLTPVAYLLLGRF 1016


>gi|299533216|ref|ZP_07046600.1| acriflavin resistance protein [Comamonas testosteroni S44]
 gi|298718746|gb|EFI59719.1| acriflavin resistance protein [Comamonas testosteroni S44]
          Length = 1057

 Score =  137 bits (343), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 70/542 (12%), Positives = 152/542 (28%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +  +G +        Q  +   P                     L    
Sbjct: 10  RPIATLLLTIGMALVGGVA-----YFQLPVAPLPQVDYPTI---------SVTASLPGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S      +ITL F  +R  ++ A  V   +   
Sbjct: 56  PDTMAAIVATPLERALGAIAGVNEMTSSSSMGSTRITLQFDLTRTVDSAAHDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L      N          + ++    +        +           ++   E   Q
Sbjct: 116 RTLLPSGMPGNPTYRKVNPADAPIMI-LALTSQSLTRGQMYDAASTVLAQKLAQVEGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +   L  +  E DP RL     +   +       N ++                   
Sbjct: 175 ASINGGALPAVRVELDPVRLAANGVSLDSVRTAITATNANRPLGAVERE----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                     H      N   +T      +                ++   +  + +  V
Sbjct: 224 ---------DHYWQVATNDQARTAAEYAPLVLRWNNGNAVRLSDVADVTDSVQDIRNYGV 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    +   LRA   P     V          S    
Sbjct: 275 MNGKPAVLLQVFKQPDANILQAVDKVRAMLPQLRASINPAIDVTVISDRTPTLRASVKEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V+F+ +   +  L+   ++  +++ T  ++ L G TL   S+  + +
Sbjct: 335 QNALLISIALVIMVVFVFLRRLRATLIPAVAVPASLMGTFGVMYLCGYTLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +     + ++   +   G      T+   +++ +   V + F   
Sbjct: 395 AAGFVVDDAIVVLENVMRHMERGKTAMQAAIEGAREIGFTVVSMSLSLIAVFVPILFMAG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+ M  +IL+SM  +++    M   ++R    +       +R        A
Sbjct: 455 IVGRFFREFAVVMSAAILVSMIISLTTTPMMCAALLRTPAEEERRRAERARRPFTRRWDA 514

Query: 540 IQ 541
             
Sbjct: 515 FW 516



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 79/235 (33%), Gaps = 7/235 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V    +S+Q               L   +    + +     +  +  ++   +
Sbjct: 252 NAVRLSDVADVTDSVQDIRNYGVMNGKPAVLLQVFKQPDANILQAVDKVRAMLPQLRASI 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDIT 705
             +             R  +++    ++IS   +++ ++    +    L     +   + 
Sbjct: 312 NPAIDVTVISDRTPTLRASVKEVQNALLISIALVIMVVFVFLRRLRATLIPAVAVPASLM 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G   L G   +  ++ A+    G+ V+D +VV + +   M+      +      +  
Sbjct: 372 GTFGVMYLCGYTLDNLSLMALTVAAGFVVDDAIVVLENV---MRHMERGKTAMQAAIEGA 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
            E     V  S++     +P+    G V      FA+ M+  I+V+   S+    
Sbjct: 429 REIGFTVVSMSLSLIAVFVPILFMAGIVGRFFREFAVVMSAAILVSMIISLTTTP 483



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 91/248 (36%), Gaps = 6/248 (2%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                    +  +    +                   + Y    +V+ ++  + ++  + E
Sbjct: 787  FVNSAGQQIPLTAFAKITTSTTPLSVQHQSGTPASTVSYNLAPNVSLSQANDAIRNAMLE 846

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
            +    +I+ +        ++ +    + ++ + + + + + I ++     L  ++TL   
Sbjct: 847  LGVPVSIRGSFSGSAGAFQQALAGQPLLILAAILTIYLVLGILYENLVHPLTILSTLPSA 906

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L     F  EF+L A   V+ LIG    + +++ D   +  +      +    I +
Sbjct: 907  GVGALLALMWFKTEFSLIAFIGVILLIGLVKKNAIMMIDFALE--REKGGHATAAQAIYR 964

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            + +  L   + T+MAA    LP+A+    G  +     I +  G++++   +++    + 
Sbjct: 965  ACHLRLRPILMTTMAALFGALPLALGRGDGAELRQPLGIAIVGGLLLSQLLTLYTTPVVY 1024

Query: 821  LFIYDWRA 828
            + +   R 
Sbjct: 1025 VLLDRVRR 1032


>gi|296120937|ref|YP_003628715.1| heavy metal efflux pump, CzcA family [Planctomyces limnophilus DSM
           3776]
 gi|296013277|gb|ADG66516.1| heavy metal efflux pump, CzcA family [Planctomyces limnophilus DSM
           3776]
          Length = 1092

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/591 (11%), Positives = 161/591 (27%), Gaps = 31/591 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M        +  M+  + L+        Q+ +D FP                   +++  
Sbjct: 5   MIRFALRQQMIVMVVAVFLMGYGTWQAWQATIDVFPDLNRPRV------------VIMTE 52

Query: 61  DE---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 + V   +    +   +          S     + I + F            V  
Sbjct: 53  APGLAPEEVETLVTFPIETAINGANGVQAVRSSSGIGISVIYVEFDWGTDIYTDRQIVME 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ V  ++       L   ++     ++L     +   ++ +E           ++   
Sbjct: 113 RLQLVQDRMPAGVVPTLAPISSIMGQILML-GMWSEDGKTNPVELRTLADWVVRQRLLTV 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG------FMFGVR 231
               Q         Q     DP  L Q   T  ++    V  N +  G          + 
Sbjct: 172 PGVSQVFTMGGGRKQFQVLVDPDALLQYGVTLQQVKQAVVDSNQNATGGYLDQQGPNELL 231

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                         KV ++             +  +       D     R  +       
Sbjct: 232 VRALGRIQSLEDLQKVVVTVRDGRPVALAQVAQVMEGPQVKRGDSSVFVRLKDELATTTP 291

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
              A   +    +         + +         E        L+AG             
Sbjct: 292 DESAAKAEQFKFSGGPAVILTINKQPGADTRLITENILKAVEELKAGLPSDIRIQPTYSQ 351

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 +             LV+I+LF+ ++  +   +   +I L++ LT  + S+ G +
Sbjct: 352 KDFIDRAIENVMEALRDGGILVVIILFLFLMNFRTTFITFTAIPLSLALTAVVFSIFGLS 411

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERI------REENRKNQSVFCSLDMGFSRAYSTIFD 465
           +   ++ G+ + IG  VD  I+  E I        +    +     +    +   +++  
Sbjct: 412 INTMTLGGLAIAIGELVDDAIVDVENIFRRLKENRQAAHPKPALLVVYQASTEVRNSVVF 471

Query: 466 SNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           + I   +  V LF      G       +   +SI+ S+  ++++   +  +++   ++  
Sbjct: 472 ATIIVCLVFVPLFALTGMEGKLFTPLGVAYIVSIMASLLVSLTVTPVLSYWLLGNARLME 531

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
              +      L      I      F  + +++   +  I  +F   L    
Sbjct: 532 HGQDSFVLRGLKCVAEKIIRFSLTFPRLNLTVTMVMVVIAGVFVAHLEKDF 582



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 77/238 (32%), Gaps = 9/238 (3%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           +        F+   G    L   +    D+   T  +    +++   +P           
Sbjct: 292 DESAAKAEQFKFSGGPAVILTINKQPGADTRLITENILKAVEELKAGLPSDIRIQPTYSQ 351

Query: 659 PKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
                  I   +  +     + ++I       +       T + L +  T   F++FG+ 
Sbjct: 352 KDFIDRAIENVMEALRDGGILVVIILFLFLMNFRTTFITFTAIPLSLALTAVVFSIFGLS 411

Query: 718 FNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            N   +  +   IG  V+D +V    ++ R+++N +          ++ ++  E     V
Sbjct: 412 INTMTLGGLAIAIGELVDDAIVDVENIFRRLKEN-RQAAHPKPALLVVYQASTEVRNSVV 470

Query: 774 YTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           + ++   +  +P+    G     F    +     I+ +   S+ +   +  ++     
Sbjct: 471 FATIIVCLVFVPLFALTGMEGKLFTPLGVAYIVSIMASLLVSLTVTPVLSYWLLGNAR 528



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/224 (11%), Positives = 81/224 (36%), Gaps = 8/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E      +            V++ ++KKI  ++             +   +     ++ +
Sbjct: 834  ENVRRRVVLQCNVSERGVVDVVQDIQKKIEPVIASLPEGYFVEYSGQFESQQSASRMIAL 893

Query: 674  IISAIAMLIYIWIR---FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +     M +++ +         +L  +T L +    ++    + G    + A+   ++L 
Sbjct: 894  LFGISLMGVFLALYSMFRSVNLSLQVMTALPMAFIGSVVALVMTGQTLTIAAMVGFISLT 953

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G +  + +++ +     ++      + +++I ++  E L   + T++ A I ++P+ +  
Sbjct: 954  GIASRNGILLLNHYLHLVRYEGEGWT-KEMIVRAGLERLAPVLMTALTAGIGLVPLVLAA 1012

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G  ++   A  +  G++ +     F+   +        A  
Sbjct: 1013 DEPGKEILYPVATVILGGVISSTMLDFFVHPALFWLFGLRSAAR 1056


>gi|242309289|ref|ZP_04808444.1| acriflavin resistance protein d [Helicobacter pullorum MIT 98-5489]
 gi|239524330|gb|EEQ64196.1| acriflavin resistance protein d [Helicobacter pullorum MIT 98-5489]
          Length = 1041

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 84/669 (12%), Positives = 178/669 (26%), Gaps = 42/669 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++   ++   G+L  L      +     P                      +   
Sbjct: 8   RPVVIIVGMILVTLFGILSLLSMPYQLTPKVTRPVIS--------------ISTTWDGAT 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +++   +          R  +  ITL F            V+  L  V
Sbjct: 54  PYEIEREIIERQEQVLKGIDNLISLESRSRNNRGNITLEFNIGTNLTEALLDVSNKLDEV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                 D  + ++  T +     V      D    +  E       + I      E   +
Sbjct: 114 KGY-PDDMDRPIIRATGDDTSPSVRMALVSDS--KNVREYRTFFNEKVIQYFERIEGVAE 170

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+    D  +L     +   +       N +                    
Sbjct: 171 VNFPSGDDRQMHIILDYQKLAAYDLSIDTIINALERENINISAGTMNYGRKSYRVRTTAE 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +                      + V +      G +R        + +          
Sbjct: 231 YKTP--------------------QMVAETIIWSDGVKRVKIKDIAQVKEGFENKTTAST 270

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK--LNIVEERNVGADLGSDS 360
                         A  +     +   ++   L  G L  +           G    +  
Sbjct: 271 YNGQEALNIFIKPTADANVLELTDKVELVFQELNEGILKKEGLKLEWVNDQRGYITQAID 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           + KG   + A L   +LF+ +      L+   S+ L+V  T  +++ L  TL + S+AGI
Sbjct: 331 LVKGNIIVGAFLACGILFIFLRSLTSTLIIAVSMPLSVFGTFIIMAGLDRTLNVVSLAGI 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +G+ VDS I+V E I    +  +S   ++  G +     +  S +T +   + +   
Sbjct: 391 SFAVGMLVDSAIVVLENIDRHLKMKKSPIQAVKDGTTEVIGGLIASVLTTVAIFIPIINM 450

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R  A+    ++ +S+F ++ ++  +   + +      I   P+         
Sbjct: 451 QEEAGQLFRDIALASSSAVGLSLFVSLIVIPTLSYQVHKITPNLKIKPIPIFSKISQKMV 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                            + S  +  L  T      I F   +   +      + + V S+
Sbjct: 511 DLGNLCVQWIMYFVQLSMQSTKNKILTITSLTCISIAFSYFLFPKMEYLPQGNQNFVFSS 570

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L        + +   GE+ F     Y   +    +  L  +          +        
Sbjct: 571 LNPPPGLSYNERKKIGEEIFTCLSPYFASNGYNGSSTLPPIDNMFYLGSETAMQFGMRST 630

Query: 658 GPKISRELI 666
               + ELI
Sbjct: 631 QDTRASELI 639



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 83/276 (30%), Gaps = 11/276 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S      +            I   G  ++ +     V          S   G  +   F 
Sbjct: 222 SYRVRTTAEYKTPQMVAETIIWSDGVKRVKIKDIAQVKEGFENKTTASTYNGQEALNIFI 281

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                   L+      +    + E + KK    +     Q     G       + KG + 
Sbjct: 282 KPTADANVLELTDKVELVFQELNEGILKKEGLKLEWVNDQR----GYITQAIDLVKGNII 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V       +++I++R      L    ++ L +  T    A      N+ ++A +   +G 
Sbjct: 338 VGAFLACGILFIFLR-SLTSTLIIAVSMPLSVFGTFIIMAGLDRTLNVVSLAGISFAVGM 396

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            V+  +VV + +    +      S    +     E +G  + + +      +P+      
Sbjct: 397 LVDSAIVVLENI---DRHLKMKKSPIQAVKDGTTEVIGGLIASVLTTVAIFIPIINMQEE 453

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G +    A+  +  + ++   S+ +   +   ++ 
Sbjct: 454 AGQLFRDIALASSSAVGLSLFVSLIVIPTLSYQVHK 489



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 85/223 (38%), Gaps = 11/223 (4%)

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             V          A  ++   + +K+     L   + T         ++      G I++ 
Sbjct: 820  QVNPPKDITIQEAMEKIEGEILEKLKSSGALGENKITLSGTADQLTKIRTALQGGFILAI 879

Query: 678  IAMLIYIWIRFK-WYFALGAITTLILDITK-TLGFFA----LFGIEFNLTAVAAVLTLIG 731
                + +   ++ + + L  + T+ L +    LG +     L     ++  +   + L+G
Sbjct: 880  FITYLLMAALYEDFIYPLIILFTIPLAVGGGVLGLWLVDTLLTDQPLDVLTMLGFIILVG 939

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
              VN+ +++  +   N++LY   + + + I  ++   +     +++ +   +LP+ +   
Sbjct: 940  TVVNNAILIVYQSLHNIRLY--GMDYHNAIINAVEVRIRPIYMSTLTSLFGMLPLVIAPG 997

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G  +       +  G+ ++   +IF+   +L F      KNA
Sbjct: 998  AGSEIYRGLGAVILGGLGLSTFLTIFLIPCLLSFFIKKEVKNA 1040


>gi|254523229|ref|ZP_05135284.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
 gi|219720820|gb|EED39345.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
          Length = 1037

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/581 (12%), Positives = 165/581 (28%), Gaps = 35/581 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           LP+  +   P A                +  L     D +   +    +   + +     
Sbjct: 33  LPRLPVAPLPEAEFPTIR---------VNASLPGASADTMASAVATPLETQLTGVPGIIE 83

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +       ITL F   +  +  A +V   +     +L  D              S +
Sbjct: 84  MTSTSALGSTSITLQFDLEKDIDTAAQEVQAAINAAAGRLPSDLPNLPTWRKVNPADSPI 143

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L   ++        E S     +    I       +     +    +  +  P RL  + 
Sbjct: 144 LV-LSVVSAQMSMTELSDLAESRLARSISQISGVSEVNIVGQQRPAIRIQAQPERLAAMG 202

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T + +                                    +     +   AN      
Sbjct: 203 MTLSDLRGVAQN--------------------ASLNQAKGALMGEQRTSTFEANDQLFDA 242

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           +    +                 +                     I S +   +   T +
Sbjct: 243 QDYRQLVVAYRAGSPVTLGDVAQVVDGAENAYVQAWPNGQPGVGLIISRQPGANIVRTTD 302

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA         V          S    + T  +   LV++V+ + +     
Sbjct: 303 AVLAALPELRANLPASVDVDVLNDRTRTIRASLHEVEVTLVLTIVLVVLVMGLFLRQLSA 362

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+    + + ++ T A + + G +L   ++  +V+ +G  VD  I+V E I        
Sbjct: 363 TLIVGAVLVVALVATFAAMYVAGFSLNNLTLVALVVAVGFVVDDAIVVVENIHRHREAGL 422

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR---GFAITMGLSILISMFTA 503
               +   G      T+   +++ + A + L F GG   R    FA+T+ ++ILIS+  +
Sbjct: 423 GPIEAALKGAEEIGFTVVSISLSLIAAFIPLLFMGGVVGRLFAEFALTITVAILISIVAS 482

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF--MRARFWGVGISILFSICSI 561
           +++   M   +++         + L+   L     ++Q+     R   +G  +  ++  +
Sbjct: 483 LTLAPMMAAHLMKRMPAHRDSQDTLAGRLLAGYDRSLQWALGHPRLILLGFGVTVAVAVV 542

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
             +      + +     +     A + +    + +  + L 
Sbjct: 543 SYVMIPKGFFPLQDTAFVVATTEAAQDIGFEEMAAKHQQLA 583



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 56/145 (38%), Gaps = 6/145 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
               +    L     L++ +  T     + G   N   + A++  +G+ V+D +VV + +
Sbjct: 355 LFLRQLSATLIVGAVLVVALVATFAAMYVAGFSLNNLTLVALVVAVGFVVDDAIVVVENI 414

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPM 801
               +     +   +   K   E     V  S++   + +P+   GG V      FA+ +
Sbjct: 415 H---RHREAGLGPIEAALKGAEEIGFTVVSISLSLIAAFIPLLFMGGVVGRLFAEFALTI 471

Query: 802 AFGIVVAASSSIFIAAPILLFIYDW 826
              I+++  +S+ +A  +   +   
Sbjct: 472 TVAILISIVASLTLAPMMAAHLMKR 496



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 84/197 (42%), Gaps = 6/197 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + +V++   +I   ++I        +  +E +    + ++ + +A+ I + + ++ + 
Sbjct: 822  EAVTLVEQAQAQIGMPASISGRFQGTAQAFQESLASQPMLILAALLAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  ++TL       +    L+G++F++ A+  ++ LIG    + +++ D         
Sbjct: 882  HPLTILSTLPSAGIGAVLMLWLWGLDFSIMALIGIVLLIGIVKKNGILMVDFALD--AQR 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSV--IGSFAIPMAFGIVVA 808
               ++    I ++        + T++AA +  +P+ + +G          + +  G++++
Sbjct: 940  NRGLTPLQAIHEACLTRFRPIMMTTLAALLGAIPLMIGFGTGSELRQPLGVAVVGGLLIS 999

Query: 809  ASSSIFIAAPILLFIYD 825
               +++    I L +  
Sbjct: 1000 QVLTLYSTPVIYLALDR 1016


>gi|167624418|ref|YP_001674712.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
 gi|167354440|gb|ABZ77053.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
          Length = 1097

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/520 (13%), Positives = 142/520 (27%), Gaps = 49/520 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +    +   G++        +  +   P                          
Sbjct: 10  RPVTVWMFMFAVILFGMV-----GFSRLAVKLLPDLSYPTIT---------IRTQYVGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E    +K         R   + + L F      +  +  V   L  +
Sbjct: 56  PVEVEQLVSKPIEEAAGIVKGLRKISSISRSGMSDVVLEFEWGTDMDMASLDVREKLDTI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE---------QSMEIIRQRIDQ 173
             +L +D KK LL+        IV    ++ +      E                +   Q
Sbjct: 116 --ELPLDVKKPLLLRFNPNLDPIVRLALSVPETSESTTEGMSETELKQMRTYAEEELKRQ 173

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +           S  +  ++  + +  +L QL  +   +                     
Sbjct: 174 LESLTGVAAVRLSGGLQQEVHIQLNQQKLTQLNLSADLIRNRIAEE-------------- 219

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +     I G             + + +  I                 I   
Sbjct: 220 ------NINLSAGKVIQGDKEYLVRTLNQFNSLEELGQIVIYRDEQTLVRLFEVAQIVDA 273

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                D   +      +     +   +     +        L   +   +L  V      
Sbjct: 274 HKERNDITRIGDKESIELAIYKEGDANTVAVAQKVTNELNKLNKHNAKAEL-KVIYDQSE 332

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +       I + L ++V+++ +      L+   SI  +VI T  ++     +L 
Sbjct: 333 FIESAVNEVTTAALIGSLLSMLVIYLFLRDIVPTLIISISIPFSVIATFNMMYFADISLN 392

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + S+ GI L +GL VD+ I+V E I        +   +   G       IF S +T L  
Sbjct: 393 IMSLGGIALAVGLLVDNAIVVLENIDRCKSLGMNRLDAAVTGTKEVAGAIFASTLTTLAV 452

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
            V L F     G      A+T+  ++L S+  A++ +  +
Sbjct: 453 FVPLVFVDGVAGALFSDQALTVTFALLASLLVALTTIPML 492



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 70/193 (36%), Gaps = 7/193 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +             +   +  ++     ++IQ       +      +   + +++
Sbjct: 864  QQRVAIVSANLAYGDLNDAVLNARDILSAQTLPTSIQARFGGQNEEMEHSFKSLQIALVL 923

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    +     ++     ++ L G  V
Sbjct: 924  AVFLVYLVMASQFESLLHPLLILIAVPMAVGGSILGLFITQTHLSVVVFIGLIMLAGIVV 983

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+ +  +     I+    I  +    L   + T+M   + + PMA+    G 
Sbjct: 984  NNAIVLVDRINQLRQDGEEKIT---AISNAAKSRLRPIIMTTMTTALGLSPMALGLGDGS 1040

Query: 792  SVIGSFAIPMAFG 804
             V    AI + FG
Sbjct: 1041 EVRAPMAITVIFG 1053



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/222 (13%), Positives = 75/222 (33%), Gaps = 3/222 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I +       V L  V   +++ +  +   +  D E   L   +    ++VA  + + 
Sbjct: 250 GQIVIYRDEQTLVRLFEVAQIVDAHKERNDITRIGDKESIELAIYKEGDANTVAVAQKVT 309

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               K+ +    + ++        I   +       +I S ++ML+           L  
Sbjct: 310 NELNKLNKHNAKAELKVIYDQSEFIESAVNEVTTAALIGSLLSMLVIYLFLRDIVPTLII 369

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++   +  T        I  N+ ++  +   +G  V++ +VV + +    +  +  ++
Sbjct: 370 SISIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAIVVLENI---DRCKSLGMN 426

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
             D       E  G    +++      +P+    G     F+
Sbjct: 427 RLDAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDGVAGALFS 468


>gi|330954197|gb|EGH54457.1| acriflavin resistance protein [Pseudomonas syringae Cit 7]
          Length = 737

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/511 (10%), Positives = 146/511 (28%), Gaps = 35/511 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +  +  FP       +             LE    + +   +    ++  + L+      
Sbjct: 31  RLGIQDFPDTDLPAVV---------ISASLEGAAPEQLETEVARKLEDKLTSLRLLKHVT 81

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             + +    I + F   +      ++V   +    ++L  +     +   T    +++  
Sbjct: 82  TQITEGSVLINVIFDIDKDGNEALNEVRNAVDSAAAELPANLDTPSVTRLTTNTTALLTY 141

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
             +  ++   A   S  +  +   Q+       +      +  ++  + DP+ +  L  +
Sbjct: 142 VVDAPRMDEEA--LSWFVDNELSKQLLTVRGVAKISRVGGVDREVQVDLDPALMAGLGLS 199

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
              ++           G    +   + +      ++D   +  I +              
Sbjct: 200 VTDIADRLRAMQKDNSGGQGDLGSGQQALRVLGGIDDPAALGAIRIPV------------ 247

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                      R         +    A            +           S        
Sbjct: 248 --------SDGRMLAVQQLATVRDTHAERTTLAYRDGKPVIGFQVIRSLGFSDVGVTRDL 299

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
               +        +++       V   + +             L ++V++  +   +  +
Sbjct: 300 RQAVSEFARLHPDVRIEEAS-NAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATV 358

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   ++ L++I T  ++   G +L   S+  + L IG+ VD  I+  E I    R  ++ 
Sbjct: 359 IVATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENIARHLRMGKTP 418

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAIS 505
             +           +  + +T +   +   F GG +    R F +T   +++ S+  A  
Sbjct: 419 RQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVARL 478

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +   M    ++ +     D   + R+     
Sbjct: 479 LTPMMAAHFLKARSHGEHDGGLMRRYLGWIH 509



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 81/254 (31%), Gaps = 6/254 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I++ V   R + +  + +  ++                    ++      V  TR L 
Sbjct: 241 GAIRIPVSDGRMLAVQQLATVRDTHAERTTLAYRDGKPVIGFQVIRSLGFSDVGVTRDLR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +   + P   I+        +         +      +A+L+  W    W   +  
Sbjct: 301 QAVSEFARLHPDVRIEEASNAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATVIV 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L I  T G     G   N  ++ A+  +IG  V+D +V  + +    +      +
Sbjct: 361 ATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENI---ARHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            R    ++ +E     + T++      LP A  GG        F +  +  ++ +   + 
Sbjct: 418 PRQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVAR 477

Query: 814 FIAAPILLFIYDWR 827
            +   +       R
Sbjct: 478 LLTPMMAAHFLKAR 491


>gi|323442904|gb|EGB00528.1| membrane transporter [Staphylococcus aureus O46]
          Length = 822

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 76/592 (12%), Positives = 190/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ N +  +    +       L    +    +
Sbjct: 95  KDDKHIDKISDPYENKQISKDKTTAFADITYNVSQTSLKDDSRDNIKSHLKDLRDNHNVQ 154

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 155 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 214

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 215 TYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYVKGIGLAVGTAGSAVIF 274

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 275 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 334

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 335 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 394

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 395 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 454

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 455 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 514

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 515 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 574

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 575 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 631

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 632 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 683



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 87/263 (33%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          +    +
Sbjct: 72  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYNVSQTS 131

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +      + +  L    N +             G    ++  I   + + I F    
Sbjct: 132 LKDDSRDNIKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 191

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 192 AAGLPIISALIGLASGVGIISLLTYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 248

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 249 QVMKTETDYVKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 308

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 309 VFSALTLLPALISIFHKRIKVNK 331


>gi|170760876|ref|YP_001788383.1| preprotein translocase subunit SecD [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407865|gb|ACA56276.1| protein-export membrane protein SecD [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 422

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 81/198 (40%), Gaps = 4/198 (2%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +    +    K   +           VG  +    +   +   ++    + +
Sbjct: 207 VITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVSLVFL 266

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ I ++    L A   L+L I   L  F+       L+ +A  L  IG +V+  V++++
Sbjct: 267 FMLIYYRVP-GLLADIALVLYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFE 325

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   T  S +  ++   +  L   + +++   I+ + +   G   +  FA+ + 
Sbjct: 326 RIREELK---TGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLM 382

Query: 803 FGIVVAASSSIFIAAPIL 820
            GI+++  ++I +   +L
Sbjct: 383 IGIILSMFTAIVVTRLLL 400



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 132/385 (34%), Positives = 228/385 (59%), Gaps = 26/385 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +L +   D+V    +++++E+I  R++++G+SE+T+ R G  RI I++PG+ +   +   
Sbjct: 61  MLEEIQADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDS 120

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T ++ F                             +  + ++G  +  ATA  + + 
Sbjct: 121 IGKTGELKF--------------------------VGPDKSIILTGKDVKDATAYINQED 154

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           + P V +  +E G ++F + T+  IG+P+A+ +D   LT PV+   I +GKA I+G+ +I
Sbjct: 155 NSPTVGLDLNESGTKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSI 214

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A ++++G+LP+ +  VE R VGA LG++++     A V G+ L+ LFM++ Y  
Sbjct: 215 EEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVSLVFLFMLIYYRV 274

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD ++ L ++L LA  S + ATLTL  IAG +L IG+AVD+N+L+ ERIREE +  
Sbjct: 275 PGLLADIALVLYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFERIREELKTG 334

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +L+ G+ RA S+I DSNIT +IA +VL+  G GAV+GFA+T+ + I++SMFTAI 
Sbjct: 335 KSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIV 394

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSR 530
           + R ++        + ++    + R
Sbjct: 395 VTRLLLKLGYDIGILNNLACFRVKR 419



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/250 (11%), Positives = 76/250 (30%), Gaps = 6/250 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++N    ++   +  + + +          +  +        I+ GLDL+GG  ++ E+ 
Sbjct: 7   KSNKGKSVIIFTLLIVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQ 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D      +    + +   + K G+   ++ R+ Q +I +        + + D +    +
Sbjct: 67  ADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDSIGKTGE 126

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                  V P K++++T  + + +        +      ++ +    ++  D        
Sbjct: 127 LKF----VGPDKSIILTGKDVKDATAYINQEDNSPTVG-LDLNESGTKKFADATKKFIGQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      +  P  Q      + + T +K         N  K     V          
Sbjct: 182 PIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTV 241

Query: 241 YLVEDKVEIS 250
                   + 
Sbjct: 242 GATLGANALD 251


>gi|329898466|ref|ZP_08272407.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [gamma proteobacterium IMCC3088]
 gi|328920818|gb|EGG28267.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [gamma proteobacterium IMCC3088]
          Length = 1035

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/556 (13%), Positives = 170/556 (30%), Gaps = 44/556 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    +V+L  ++   G+       L    +   P       +++  +L GG        
Sbjct: 21  RRPILIVVLNILVALAGIAA-----LNGVEVRELPDVDRP-VVTVRANLPGG-------- 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    +   + +           +   +  + F      +  A +V   +  
Sbjct: 67  APETVDAEVTSVLEGAAARVSGVKSLRSQSEENSARTVVEFRPGVDLDVAASEVRESVNQ 126

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  D ++  +V   +   +++    + D +    + + +E       +    +   
Sbjct: 127 IRRRLPNDVEQVNVVKADDDARAVLDIAISSDTLSLEELSRRLETD--IAPEFLSIDGVA 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      L    DP +L     + ++++                    R       
Sbjct: 185 DVRLNGARERVLRVAIDPLKLSSFGLSISQVANVLRQAPFDVPAGSLISTDQRLIVRADA 244

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 ++  I ++G T                                    A      
Sbjct: 245 TSVTAEQVENIIVSGNT------------------------RIGDLAQAYFGPADAGSFV 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +       +A  +     + A  +   LR          V   +      S S 
Sbjct: 281 RLNGKPVVGLGVIRQAGSNTIEISDQALPMLDQLRDRFP-DLEMTVTNDDALFIRKSVSE 339

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T AI   LV+  L++ +   +  +V  FSI + +   +A L L+  ++ + ++  +V
Sbjct: 340 VITTLAITVVLVVATLWVFIGSFRATIVPAFSIPIALFGAIAALWLMDFSINILTLLALV 399

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E I+           +  +G    +  +  +    +   V + F  
Sbjct: 400 LATGLIVDDAIVVTENIQRRRSMGLGPRAAAVLGTREVFFAVVATTAVLVAVFVPIAFLP 459

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F   +  +++IS F A+S+V A    + +    K+        F  + +  
Sbjct: 460 STAGRLFREFGGVLAAAVIISSFVALSLVPAFTAKLPKSAGQKNHFAFVGRGFARVYEKT 519

Query: 539 AIQFMRARFWGVGISI 554
               +   +   G+S+
Sbjct: 520 LHWALNKAWLIAGLSL 535



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 80/221 (36%), Gaps = 6/221 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   + +Q++  +    +     ++    E++P S                    +  V
Sbjct: 802  GQRRAIEVQFEIAEDYPLSEATAALRGFAQELLPDSMGLLFLGEAQTFEDTNREVVMTYV 861

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   I +L+          A+  + T+   +   +    L GI  N+ +   ++ LIG  
Sbjct: 862  LAFLIVLLVLAAQFESVNSAVVVVLTVPFGLAAAIYALYLTGISLNIYSQIGLVMLIGLL 921

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + V++ +      +L     + RD I+ +    L   + T ++  +  LP+ +    G
Sbjct: 922  AKNSVLLVEFAN---QLRDRGETVRDAIEHAATIRLRPIMMTLISTILGGLPLILSTGAG 978

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 S    +  G+ +A   ++++   + L++  +    A
Sbjct: 979  AEARNSIGWVVFGGLGLATLFTLYLTPVLYLWLARFAKPRA 1019



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 66/195 (33%), Gaps = 10/195 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S     +L+ ++ +  ++    T  +   +   +S  +    I  V++ A   +     R
Sbjct: 304 SDQALPMLDQLRDRFPDLEMTVTNDDALFIRKSVSEVITTLAITVVLVVATLWVFIGSFR 363

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                A      L       +    L     N+  + A++   G  V+D +VV + +   
Sbjct: 364 ATIVPAFSIPIALF----GAIAALWLMDFSINILTLLALVLATGLIVDDAIVVTENI--- 416

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +  +  +  R        E     V T+       +P+A      G +   F   +A  
Sbjct: 417 QRRRSMGLGPRAAAVLGTREVFFAVVATTAVLVAVFVPIAFLPSTAGRLFREFGGVLAAA 476

Query: 805 IVVAASSSIFIAAPI 819
           +++++  ++ +    
Sbjct: 477 VIISSFVALSLVPAF 491


>gi|302525416|ref|ZP_07277758.1| membrane transporter [Streptomyces sp. AA4]
 gi|302434311|gb|EFL06127.1| membrane transporter [Streptomyces sp. AA4]
          Length = 727

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 77/614 (12%), Positives = 182/614 (29%), Gaps = 60/614 (9%)

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
           P      D  G      V       P    +        V      +           E 
Sbjct: 80  PEGRKVTDPAGQAAVESVVGKLRSAPKVAGVVDPFQARSVSPDGRVALAQVSYQVKGFEL 139

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           +      L A     K         G  +        T  +   +  +VL +        
Sbjct: 140 SDSDRQALLATGDHAKQLGYRVEYGGDAVQGIPATGATEGLGVAVAAVVLIITFGSLLAA 199

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPS---IAGIVLGIGLAVDSNILVNERIREENRK 444
            +   +  + V + +A + L   ++ L S   +  +++G+ + +D  + +  R R E  +
Sbjct: 200 GIPLLTALVGVGVGMAGIMLASGSMELNSNTPVLALMIGLAVGIDYALFIVSRYRHELAE 259

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            +    +       A S +  + +T +IA   L   G   +    +    ++++++  A+
Sbjct: 260 GRDPEDAAGRAVGTAGSAVVFAGLTVVIALAGLTVVGIPFLGQMGVAAAATVVVAVLIAL 319

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           +++ A++ F         I +   +      +  A    R R   +  +++         
Sbjct: 320 TLLPAVLGFAGARVARSKIRVRRRTEGPTHGERWARFVARHRVPVLLTALVGLAVVAIPA 379

Query: 565 FTHG-----------------------LNYGIDFKGGIQLGVLANRPVDLSVVRSN---- 597
            +                           +G    G + + V      +   V+      
Sbjct: 380 LSMQLGLPNDSTAAPDTTQRKAYDLVSAGFGEGANGPLLVVVDTGPNRNPDAVKQAAADI 439

Query: 598 --LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK----ITEIVPLSTI 651
             L  +        N  G+   L  +      S     ++  ++ +      +      +
Sbjct: 440 GRLPDVAAVTPPRVNPAGDTALLTVIPKSGPSSTQTEDLVSAIRAQSAPLQDKTGGSLAV 499

Query: 652 QNTEIVGPKISRELIRKGI--VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                    +S++L    +  + +I+    +L+ +  R      L A    +  +  T G
Sbjct: 500 TGQTAANIDVSQKLSDAMLPYLALIVGLAFVLLMLVFR-SVVVPLKATLGFLGSVVATFG 558

Query: 710 FFA----------LFGIEFNLTA-----VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                        L G+           +  +  L G +++ +V +  RMR+    +   
Sbjct: 559 AVVAVFQWGWLTDLLGVASTGPIMSMLPILLIGVLFGLAMDYQVFLVTRMREE---HVHG 615

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-GSVIGSFAIPMAFGIVVAASS-S 812
              ++ +         R V  +    ISV    V    ++I S    +AFG+++ A    
Sbjct: 616 AEPQEAMVTGFRH-GARVVVAAALIMISVFAGFVLAESTLIQSIGFALAFGVLIDAFVIR 674

Query: 813 IFIAAPILLFIYDW 826
           + I   ++  +   
Sbjct: 675 MTIVPAVMSLLGRR 688


>gi|330890797|gb|EGH23458.1| multidrug RND efflux transporter, permease MdtC [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 723

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/564 (11%), Positives = 158/564 (28%), Gaps = 39/564 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +             L     + +   +    +     +     
Sbjct: 29  FRLLPVAPLPNMDFPVIV---------VSASLAGASPEVMASTVATPLERSLGSIAGVNT 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  Q   +I L F  +R     A +V   +    + L    +            + +
Sbjct: 80  MTSNSSQGTTRIILQFDLNRDINGAAREVQAAINASRNLLPSGMRSMPTYKKVNPSQAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   ++   +    +            +       +       L  +  E +P  L Q  
Sbjct: 140 MV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVGEVQIGGSSLPAVRIELEPQMLSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +     + N  +                   +E   +                  
Sbjct: 199 VSLDDVRTAITVANVRRPKGFVEDDQHNWQVQANDQLETAKD------------------ 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                 +   +    +            + + +A  +   T+ 
Sbjct: 241 --YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFYNNDRAVLLVVNRQAGANIIETVA 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LRA         V          +    + T  I   LV++V+F+ +   + 
Sbjct: 299 QIKAQLPALRAVLPASVSLNVAMDRSPVIKATLHEAEMTLLIAVVLVVMVVFLFLGSFRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ ++++ T A++ L G +L   S+  ++L  GL VD  I+V E I        
Sbjct: 359 SLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILAPGLVVDDAIVVLENISRHIHNGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTA 503
               +  +G      T+   N++ +   + + F GG      R F+IT+ +SI++S+  +
Sbjct: 419 DPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSIVVSLIVS 478

Query: 504 ISIVRAMMIFIIRY------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +++   +    ++          +        R     D      MR R   +   ++  
Sbjct: 479 LTLTPMLCARWLKPHDSGKDNAFQRWSERVNDRMVAGYDRSLGWVMRHRRLTLLSLLITV 538

Query: 558 ICSICLLFTHGLNYGIDFKGGIQL 581
           + ++ L       +      G  +
Sbjct: 539 VVNVALYVVVPKTFLPQQDTGQLM 562



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 6/140 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILAPGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +           E     +  +++     + +   GG   S+   F+I ++  I
Sbjct: 412 RHIHNGLDPMKAAFLGAKEVGFTLLSMNVSLVAVFISILFMGGLVESLFREFSITLSVSI 471

Query: 806 VVAASSSIFIAAPILLFIYD 825
           VV+   S+ +   +      
Sbjct: 472 VVSLIVSLTLTPMLCARWLK 491


>gi|237736778|ref|ZP_04567259.1| acriflavin resistance protein B [Fusobacterium mortiferum ATCC
           9817]
 gi|229420640|gb|EEO35687.1| acriflavin resistance protein B [Fusobacterium mortiferum ATCC
           9817]
          Length = 1012

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/549 (11%), Positives = 158/549 (28%), Gaps = 37/549 (6%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           ++  I ++      L +  ++  P+                  +  +      ++  +  
Sbjct: 16  IMFLISMIFFGYLGLKKMPVEMMPNINRPTVR---------IRVKWDGATPSDMDKMITR 66

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             +E+   ++             + I + F      E     +   +  +  K   D  +
Sbjct: 67  KIEEILPNVEGITEYSSESTAETSMIYVKFKYGTDVETKITLIQNEINQIRKKFPEDMDE 126

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++  ++  ++  +             +E    +       +   E   +         +
Sbjct: 127 PIIRKSSSSDVPALTFSMAGG----DLVEMRSYVESTLKPMLERIEGVSEIEVFGGREQE 182

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           +    DP +L         +                              +   +   G 
Sbjct: 183 VAVVVDPDKLENYNLGIMDVYNKMAS--------------------ASVNIPGGILREGE 222

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                    + +    + +I                +I                     I
Sbjct: 223 KEYLIKVEAEIERADEIKEIVLLNRDGHILKLKDIADIKISPKDRSSVSRKNGKENIVVI 282

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            S   + +    ++    +    +       +   E  +    + S    + +  +   L
Sbjct: 283 VSKTDEGNAVGIVKNVKKVMEQAKGSFPINTVMNYEFDSSITIMNSIKNVQSSGIMGLLL 342

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
              +LF+ +      L+   +I ++VI T  LL+  G TL L S+ G+ LGIG+ VD+++
Sbjct: 343 ASGILFVFLKSISATLIIATAIPISVIFTFFLLNAQGITLNLMSLMGLSLGIGMLVDNSV 402

Query: 433 LVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGF 488
           +V + I     +  ++   +   G       +  S +T + A + L F  G         
Sbjct: 403 VVVDNIFRHISELGKNRVAAARDGAEEMALPVLASTLTTVAAFLPLVFQEGLAKEQFNNL 462

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
              +  S+L S+  +++ V  +   I+   K  + +   L         +    +R R  
Sbjct: 463 CYAISYSLLASLVISLTFVPMISSKIMNENKNLNSEGKFLKSLRKWYVVLLKWAVRRRGI 522

Query: 549 GVGISILFS 557
            V I I+  
Sbjct: 523 VVVIMIVLF 531



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 87/271 (32%), Gaps = 9/271 (3%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                     +    ++ +   + + +S + +         +  ++   +      L    
Sbjct: 741  QQIYRESTQYILDSRITLPNGKNIKISDIATFKVEEGPSKLEKKDKRKKIVLYANLDDNL 800

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                AQ  ++E +++                   ++S +LI    + +    +   I +W
Sbjct: 801  DLKTAQNMIVETLEEMGKPDSVTYGYGGKSADMAEMSEQLIYTFGIAI---FLIYFILVW 857

Query: 686  IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                +      I ++ L  T         G+  +       + L G  VN+ +V+ D + 
Sbjct: 858  QFESFIMPFIIILSIPLSTTGAFYALYGAGLSIDAMVSVGFVMLAGIVVNNAIVLIDFI- 916

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
             N++      S    I  S    L   + T++   + +LP+      G  +    +  + 
Sbjct: 917  -NLRR-EAGDSKNKAIITSGRTRLRPILMTTLTTVLGMLPLMFSNGEGSEMYKGMSFVVV 974

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            FG+  A   ++ +       I D+     R+
Sbjct: 975  FGLSTATLLTLIVIPVFYYLIDDFTGAIKRV 1005



 Score = 40.8 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 85/241 (35%), Gaps = 4/241 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +     S +      +    E   ++  +   G++V   + ++ V ++     P++T+ 
Sbjct: 256 DIADIKISPKDRSSVSRKNGKENIVVIVSKTDEGNAVGIVKNVKKVMEQAKGSFPINTVM 315

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFF 711
           N E          I+      I+  +     +++  K   A   I T I + +  T    
Sbjct: 316 NYEFDSSITIMNSIKNVQSSGIMGLLLASGILFVFLKSISATLIIATAIPISVIFTFFLL 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              GI  NL ++  +   IG  V++ VVV D + +++     +            E    
Sbjct: 376 NAQGITLNLMSLMGLSLGIGMLVDNSVVVVDNIFRHISELGKNR--VAAARDGAEEMALP 433

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +++    + LP+    G     F   + + I  +  +S+ I+   +  I        
Sbjct: 434 VLASTLTTVAAFLPLVFQEGLAKEQFN-NLCYAISYSLLASLVISLTFVPMISSKIMNEN 492

Query: 832 R 832
           +
Sbjct: 493 K 493


>gi|188527543|ref|YP_001910230.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori Shi470]
 gi|188143783|gb|ACD48200.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter pylori Shi470]
          Length = 1028

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/568 (11%), Positives = 155/568 (27%), Gaps = 40/568 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + ++        +  +  FP       +                   + +   
Sbjct: 10  ITTLMFALAIVFFGTMGFKKLSVALFPKIDMPTVV---------VTTTYPGASAEIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        +  +  + + + F   +  E   + V   +  V    + +
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSTSSKNVSIVVIEFELEKPNEEALNDVVNKISSVRFD-DSN 119

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            KK  +        +I+    +   V   A   +          +           +   
Sbjct: 120 IKKPSINKFDTDSQAIISLFVSSSSVP--ATTLNDYAKNTIKPMLQKINGVGGVQLNGFR 177

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+    DP+ + +   T A +       N    G          S           ++
Sbjct: 178 ERQIRIYADPTLMNKYNLTYADLFSTLKAENVEIDGGRIVNSQRELSILINANSYSVADV 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   I   L               
Sbjct: 238 KKIQVGNH------------------------VRLGDIAKIEIGLEEDNTFASFKDKPGV 273

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +    ++        ++A S             G    S    K    + 
Sbjct: 274 ILEIQKIAGANEIEIVDRVYEALKHIQAISPSY-EIRPFLDTTGYIRTSIEDVKFDLVLG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L ++V+F  +  G   LV+  SI ++++ T AL+  +G +L + ++  + L IG+ +D
Sbjct: 333 AILAVLVVFAFLRNGTITLVSAISIPISIMGTFALIQWMGFSLNMLTMVALTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++     +   +   G      A   I    ++  +    +    G   +
Sbjct: 393 DAIVVIENIHKKLEMGMNKRKASYEGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQ 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+ L+I +S    ++I+  +   ++  +  +    +      L      +      
Sbjct: 453 SFGITVALAIALSYVVVVTIIPMVSSVVVNPRHSRFYVWSEPFFKALESYYTRLLQWVLN 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGID 574
              +    +  +    L     +     
Sbjct: 513 HKLIISIAVVLVFVGSLFVASKIGMEFM 540



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 74/224 (33%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +  A   + E++ +                   +        G   + 
Sbjct: 799  NRQRSVTVLAEPNRNAGVSLGEILTQVSKNTKEWLVEGANYRFTGEADNAKETNGEFLIA 858

Query: 675  ISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +LIY+    +          + T+ L  +       L     ++ ++  ++ LIG
Sbjct: 859  LATAFVLIYMILAALYESILEPFIIMVTMPLSFSGAFFALGLVHQPLSMFSMIGLILLIG 918

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                +  ++ D   +  K     ++ ++ I  +    L   + T++A    +LP+A+   
Sbjct: 919  MVGKNATLLIDVANEERK---KGLNIQEAILFAGKTRLRPILMTTIAMVCGMLPLALASG 975

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G ++     I M+ G++++   S+ I       +     K  R
Sbjct: 976  DGAAMKSPIGIAMSGGLMISMVLSLLIVPVFYRLLAPIDDKIKR 1019



 Score = 38.9 bits (88), Expect = 3.8,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 78/241 (32%), Gaps = 7/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  +      L+  +      D     L   +    + +     +    K I
Sbjct: 240 IQVGNHVRLGDIAKIEIGLEEDNTFASFKDKPGVILEIQKIAGANEIEIVDRVYEALKHI 299

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+        I   +       V+ + +A+L+           L +  ++ +
Sbjct: 300 QAISPSYEIRPFLDTTGYIRTSIEDVKFDLVLGAILAVLVVFAFLRNGTITLVSAISIPI 359

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T       G   N+  + A+   IG  ++D +VV + +    K     ++ R    
Sbjct: 360 SIMGTFALIQWMGFSLNMLTMVALTLAIGIIIDDAIVVIENIH---KKLEMGMNKRKASY 416

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           + + E     V  S       +P+    G +     SF I +A  I ++    +    P+
Sbjct: 417 EGVREIGFALVAISAMLLSVFVPIGNMKGIIGRFFQSFGITVALAIALS-YVVVVTIIPM 475

Query: 820 L 820
           +
Sbjct: 476 V 476


>gi|153938676|ref|YP_001392341.1| preprotein translocase subunit SecD [Clostridium botulinum F str.
           Langeland]
 gi|152934572|gb|ABS40070.1| protein-export membrane protein SecD [Clostridium botulinum F str.
           Langeland]
 gi|295320333|gb|ADG00711.1| protein-export membrane protein SecD [Clostridium botulinum F str.
           230613]
          Length = 422

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 80/198 (40%), Gaps = 4/198 (2%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +    +    K   +           VG  +    +   +   ++    + +
Sbjct: 207 VITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFL 266

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ I ++    L A   L L I   L  F+       L+ +A  L  IG +V+  V++++
Sbjct: 267 FMLIYYRVP-GLLADIALALYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFE 325

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   T  S +  ++   +  L   + +++   I+ + +   G   +  FA+ + 
Sbjct: 326 RIREELK---TGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLM 382

Query: 803 FGIVVAASSSIFIAAPIL 820
            GI+++  ++I +   +L
Sbjct: 383 IGIILSMFTAIVVTRLLL 400



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 133/385 (34%), Positives = 227/385 (58%), Gaps = 26/385 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +L +   D+V    +++++E+I  R++++G+SE+T+ R G  RI I++PG+ +   +   
Sbjct: 61  MLEEIQADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEIIDS 120

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T ++ F                             +    ++G  +  ATA  + + 
Sbjct: 121 VGKTGELKF--------------------------VGPDKSTILTGKDVKDATAYINQED 154

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           + P V +  +E G ++F + T+  IG+P+A+ +D   LT PV+   I +GKA I+G+ +I
Sbjct: 155 NSPTVGLDLNESGTKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSI 214

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A ++++G+LP+ +  VE R VGA LG++++     A V G+ L+ LFM++ Y  
Sbjct: 215 EEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFLFMLIYYRV 274

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD ++ L ++L LA  S + ATLTL  IAG +L IG+AVD+N+L+ ERIREE +  
Sbjct: 275 PGLLADIALALYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFERIREELKTG 334

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +L+ G+ RA S+I DSNIT +IA +VL+  G GAV+GFA+T+ + I++SMFTAI 
Sbjct: 335 KSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIV 394

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSR 530
           + R ++        + S+    + R
Sbjct: 395 VTRLLLKLGYDIGILNSLACFRVKR 419



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 75/250 (30%), Gaps = 6/250 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++N    ++   +  + + +          +  +        I+ GLDL+GG  ++ E+ 
Sbjct: 7   KSNKGKSVIIFTLLVVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQ 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D      +    + +   + K G+   ++ R+ Q +I +        + I D V    +
Sbjct: 67  ADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEIIDSVGKTGE 126

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                  V P K+ ++T  + + +        +      ++ +    ++  D        
Sbjct: 127 LKF----VGPDKSTILTGKDVKDATAYINQEDNSPTVG-LDLNESGTKKFADATKKFIGQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      +  P  Q      + + T +K         N  K     V          
Sbjct: 182 PIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTV 241

Query: 241 YLVEDKVEIS 250
                   + 
Sbjct: 242 GATLGANALD 251


>gi|88858259|ref|ZP_01132901.1| AcrB/AcrD/AcrF family protein [Pseudoalteromonas tunicata D2]
 gi|88819876|gb|EAR29689.1| AcrB/AcrD/AcrF family protein [Pseudoalteromonas tunicata D2]
          Length = 1024

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/510 (11%), Positives = 142/510 (27%), Gaps = 42/510 (8%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +   ++  I   +   N   ++  D     +  + +  G            +  +D    
Sbjct: 16  LSIFILLLIAGWVTYQNIPKEANPDVTIPFIYVSIVHDG------------ISPEDA-ER 62

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            L    +     ++          +    +TL F      +     V   +    +KL  
Sbjct: 63  LLVRPMEIELRSIEGVKEMSAVASEGHASVTLEFLAGMDPKEALADVRDKVSLAKAKLPS 122

Query: 129 DPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
           + ++  +     E E   +    + +      +  +    R   D++    S ++     
Sbjct: 123 ESEEPEVHEVLMEDEQPTITLTLSGNVPERGLLTLA----RNLKDELESISSVLEVEIGG 178

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                +  E DP  +         +       N             R +     + E   
Sbjct: 179 DREDMVEIEVDPLAMISYGLKQNDIYQLLSNNNRLIAAGTLDTGKGRFAIKIPSVFESIQ 238

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           ++    +                      +G +    +    I +          +   +
Sbjct: 239 DVMEQPVKV--------------------VGDKVVRFMDVAVIRRAYKDPNTIARINGEL 278

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                   +   +   T++    +    R                       +  +    
Sbjct: 279 AVSLEVKKRVGENIIDTVKQVKAVVEETRTRWPDHIKVNYTGDMSLDVEQMLADLQNNVL 338

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               LV+IV+  I+       +   +I  + +  + ++SL G T+ +  +  +++ +G+ 
Sbjct: 339 SAVLLVVIVIIAILGSR-AAFLVGVAIPGSFLTGILVISLFGMTVNIVVLFALIMAVGML 397

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---A 484
           VD  I+V E       +      +  +   R    I  S  T L A   L F+ G     
Sbjct: 398 VDGAIVVTEFADRMMGEGMHRKKAYSLAAKRMAWPIIASTATTLAAFAPLIFWPGMMGEF 457

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFI 514
           ++   IT+  ++  S+  A+  V  +   I
Sbjct: 458 MKYLPITLMATLSASLVMALIFVPTIGSLI 487



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 82/239 (34%), Gaps = 17/239 (7%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMVKKKITEIV 646
            +D++V+R   +                    R+     D+      V+E  + +  + +
Sbjct: 255 FMDVAVIRRAYKDPNTIARINGELAVSLEVKKRVGENIIDTVKQVKAVVEETRTRWPDHI 314

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            ++   +  +   ++  +L    +  V++  I ++  +  R  +   + AI    L    
Sbjct: 315 KVNYTGDMSLDVEQMLADLQNNVLSAVLLVVIVIIAILGSRAAFLVGV-AIPGSFLTGIL 373

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTTSISFRDLIDK 763
            +   +LFG+  N+  + A++  +G  V+  +VV    DRM          +  +     
Sbjct: 374 VI---SLFGMTVNIVVLFALIMAVGMLVDGAIVVTEFADRM------MGEGMHRKKAYSL 424

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +        + ++     +  P+  W    G  +    I +   +  +   ++     I
Sbjct: 425 AAKRMAWPIIASTATTLAAFAPLIFWPGMMGEFMKYLPITLMATLSASLVMALIFVPTI 483



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 83/231 (35%), Gaps = 21/231 (9%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            + + +V +          +  L  ++ ++TE      ++       +   E         
Sbjct: 797  DSHRVVSVNADMKVGELLSLALPRLQAQLTEQGLDPRVKLKVRGENEEQNESETFLQNAF 856

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAV-AAVLTLIG 731
            +++   M I +  +F  +Y AL  ++ +I           +    F +      V++L G
Sbjct: 857  LVALFVMGIILVTQFNSFYQALLILSAVIFSTVGVFLGLLILQQPFGIVMSGIGVISLAG 916

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VN+ +V+ D       L    I  ++ I ++  + L   + T++   + ++PM +   
Sbjct: 917  IVVNNNIVLIDTYN---VLCKQGIEAKEAILRTGAQRLRPVLLTTVTTILGLMPMVLQVN 973

Query: 789  ---------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                     +G          +  +A G+  A   ++ I  P LL +   +
Sbjct: 974  IDLFNRQIDFGAPSTQWWVQLSTAVAGGLAFATVLTL-ILTPCLLALRIKK 1023


>gi|229588503|ref|YP_002870622.1| hypothetical protein PFLU0960 [Pseudomonas fluorescens SBW25]
 gi|229360369|emb|CAY47226.1| putative conserved membrane protein [Pseudomonas fluorescens SBW25]
          Length = 1031

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/555 (13%), Positives = 163/555 (29%), Gaps = 26/555 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     D +   +    +   S +        S     + +TL F  ++  +  A 
Sbjct: 51  VSATLPGASPDTMASSVATPLEVQFSAIPGMTQMTSSSALGSSLLTLQFTLNKSIDTAAQ 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +   + KL  D              S VL   ++      + E S  +      Q
Sbjct: 111 EVQAAINTASGKLPSDMPSLPTWKKVNPADSPVLI-LSVSSDSMPSTELSDYVETLLARQ 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I   +   Q   + +    +  +  P +L  +  T A +                     
Sbjct: 170 ISQIDGVGQINITGQQRPAIRVQASPDKLAAIGLTLADIRLAI----------------- 212

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                +   +          ++  + N      +    +                 +   
Sbjct: 213 ---QQSSLNLAKGAIYGENSVSTLSTNDQLFLPEDYAQLIVSYKDGAPVQLRDIAKVING 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                             + S +   +   T++        L+          V      
Sbjct: 270 SENAYVQAWSGDTPGVNLVISRQPGANIVETVDRIQAELPRLQGMLPASVQVSVLTDRTK 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  I   LV+ V+ + +      L+    + ++++ + AL+ L+G +L 
Sbjct: 330 TIRASLHEVEVTLLIAILLVVAVMALFLRQLSATLIVSSVLGVSLVASFALMYLMGFSLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++  IV+ +G  VD  I+V E I            +   G      T+   + + + A
Sbjct: 390 NLTLVAIVISVGFVVDDAIVVVENIHRHLEAGLGQREAAIKGAGEIGFTVVSISFSLVAA 449

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F G   G   + FA+T   +ILIS+  ++++   +    +R     + D    S 
Sbjct: 450 FIPLLFMGGVVGRLFKEFALTATSTILISVVVSLTLAPTLAALFMRAPTHTTHDKPGFSE 509

Query: 531 FFLIPDCIAIQF--MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
             L      ++      R       +  ++  +  +F     + +   G +     A   
Sbjct: 510 RLLAGYARNLRRALAHQRSMAAIFLVTLALAVVGYVFIPKGFFPVQDTGFVLGTSEAAAD 569

Query: 589 VDLSVVRSNLESLQI 603
           V    + +  ++L  
Sbjct: 570 VSYPDMVAKHKALAE 584



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 91/250 (36%), Gaps = 10/250 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      +R   + +   + ++          V L             ++ ++ ++
Sbjct: 249 IVSYKDGAPVQLRDIAKVINGSENAYVQAWSGDTPGVNLVISRQPGANIVETVDRIQAEL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    ++ +        V ++I+ + ++  + +  +   A   +++
Sbjct: 309 PRLQGMLPASVQVSVLTDRTKTIRASLHEVEVTLLIAILLVVAVMALFLRQLSATLIVSS 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     L G   N   + A++  +G+ V+D +VV + +    +     +  R
Sbjct: 369 VLGVSLVASFALMYLMGFSLNNLTLVAIVISVGFVVDDAIVVVENIH---RHLEAGLGQR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     V  S +   + +P+   GG V      FA+     I+++   S+ +
Sbjct: 426 EAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVVGRLFKEFALTATSTILISVVVSLTL 485

Query: 816 AAPILLFIYD 825
           A  +      
Sbjct: 486 APTLAALFMR 495



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 87/202 (43%), Gaps = 6/202 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              + M+ +   EI   +TI        +  +  +      ++ + +A+ I + + ++ + 
Sbjct: 822  DAVIMLNQAKNEIGMPTTIIGNFQGAAQAFQSSLASQPWLILAALVAVYIILGVLYESFV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  I+TL       L   +L G +F++ A+  ++ LIG    + +++ D      ++ 
Sbjct: 882  HPLTIISTLPSAGLGALIMLSLMGQDFSIMALIGLVLLIGIVKKNGILMIDFALDAQRV- 940

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S  D I ++        + T++AA +  +P+ +    G  +     I +  G++V+
Sbjct: 941  -RGLSPEDAIYEACVTRFRPIIMTTLAALLGAVPLMLGAGPGAEMRQPLGIAVVGGLLVS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
             + ++F    I L++  +  + 
Sbjct: 1000 QALTLFTTPVIYLYLEKFFHRP 1021


>gi|62390539|ref|YP_225941.1| preprotein translocase subunit SecD [Corynebacterium glutamicum
           ATCC 13032]
 gi|13346826|gb|AAK19842.1|AF331924_7 SecD [Corynebacterium glutamicum]
 gi|41325877|emb|CAF20040.1| Preprotein translocase subunit SecD [Corynebacterium glutamicum
           ATCC 13032]
          Length = 637

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 112/590 (18%), Positives = 216/590 (36%), Gaps = 65/590 (11%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + L+ +I   G+       L        P         LG+DL+GG+ + L   
Sbjct: 14  RWPKRAIALFVLIVV-GVYAL---VLLTGDRSATP--------KLGIDLQGGTRVTLVPQ 61

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS--RFKENIADKVTLFL 119
             D     L      L + +   G+   S+    N + ++         +++     L  
Sbjct: 62  GQDPTQDQLNQARTILENRVNGMGVSGASVVADGNTLVITVPGENTAQAQSLGQTSQLLF 121

Query: 120 QGVNSKLNVDPK--------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
           + V      D                +  ++T  +   S+      +    +   E++ E
Sbjct: 122 RPVGQAGMPDMTTLMPELEEMANRWVEYGVITEEQANASLEEMNTAVASTTAVEGEEATE 181

Query: 166 IIRQRIDQIGISESTIQRLGSHRILIQLPGE------QDPSRLRQLLGTTAKMSFHKVLP 219
                +    + E       + R               DP+ ++    +  + +  ++ P
Sbjct: 182 PEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPT-VQIAASSLMQCTTDEMDP 240

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLV------------EDKVEISGIHLNGATANF------ 261
                     +     + G  Y++            E+   ++G  ++            
Sbjct: 241 LAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPITGGFNAQ 300

Query: 262 -DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQI 319
                          E G+  +  +T   + + +A+ LD +V++APVI  A        I
Sbjct: 301 SGQMEISFAFKSGDGEEGSATWSSLTSQYLQQQIAITLDSQVISAPVIQSATPVGSATSI 360

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTCAIVAGLV 373
           +G+FT   A  LA  LR G+LP+               V   LG+ S+  G  A + G+ 
Sbjct: 361 TGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLKAGLIAGIVGIA 420

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLS----LLGATLTLPSIAGIVLGIGLAVD 429
           L+ +F+   Y  +G V+ F++F   +L   LL      +G +L L  IAG+++GIG   D
Sbjct: 421 LVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLIIGIGTTAD 480

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           S ++  ERI++E R+ +S   ++   +  A  TI   N+  L+  +V++    G V+GFA
Sbjct: 481 SFVVFYERIKDEIREGRSFRSAVPRAWESAKRTIVTGNMVTLLGAIVIYLLAVGEVKGFA 540

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
            T+GL+ +  +     I   ++I   R        +N + R   + +   
Sbjct: 541 FTLGLTTVFDLVVTFLITAPLVILASRNPFFAKSSVNGMGRVMKLVEERR 590



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 73/214 (34%), Gaps = 8/214 (3%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +     Q         +                   T  V P +    ++ G++ 
Sbjct: 355 GSATSITGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLKAGLIA 414

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA----LFGIEFNLTAVAAVLT 728
            I+    + I+++  ++  F   ++ TL        G         G   +L  +A ++ 
Sbjct: 415 GIVGIALVAIFVFAYYRV-FGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLII 473

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG + +  VV Y+R++  ++      SFR  + ++        V  +M   +  + + +
Sbjct: 474 GIGTTADSFVVFYERIKDEIRE---GRSFRSAVPRAWESAKRTIVTGNMVTLLGAIVIYL 530

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                +  FA  +    V     +  I AP+++ 
Sbjct: 531 LAVGEVKGFAFTLGLTTVFDLVVTFLITAPLVIL 564


>gi|311693910|gb|ADP96783.1| multidrug resistance protein [marine bacterium HP15]
          Length = 1027

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/641 (12%), Positives = 169/641 (26%), Gaps = 39/641 (6%)

Query: 27  LPQSMLDRFPSAM-PKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                 +  P    P   +S+ LD          +  +D     ++    ELRS L+   
Sbjct: 30  FQTIPKEANPDVTIPMIYVSMTLD---------GISPEDAERLLVRPMEQELRS-LEGIK 79

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +  +    + L F      +     V   +    +KL  +  +  +         +
Sbjct: 80  EMRGTASEGHASVMLEFDAGFDPDKALQDVREKVDTARTKLPQEADEPRVNEINVSLFPV 139

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +    +        I     I R+  D I      ++          L    DP  L   
Sbjct: 140 LSVGLSGPLSERELI----TIARRFQDAIESIPEVLEVEIGGDREDLLEIVVDPQVLESY 195

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                +++                         N  LV      +G            +T
Sbjct: 196 GIDFDQLASLVT--------------------RNNQLVAAGSLDTGNGRMALKVPGVIET 235

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            + V+ +     G           + +          +          S ++  +   TI
Sbjct: 236 IEDVMSMPVKVDGDTVVTFGDVAMLQRTFKDPTGFARINGEPALVLEVSKRSGANIIETI 295

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
                L    R                       S           LVLIV+   +    
Sbjct: 296 AQVRELIDEARPQLPDSLEIRYIMDQSEEVRDILSDLLNNVLTAIVLVLIVVIAAMGPRS 355

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             +V   +I    +  + ++  +G TL +  +  ++L  G+ VD  I+V+E       + 
Sbjct: 356 AVMV-GLTIPGAFLTGILVIWSMGLTLNIVVLFSLILVAGMLVDGAIVVSELADRNLSEG 414

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
           Q+V  +     SR    I  S  T L   V L F+    G  ++   +T+ + ++ S+  
Sbjct: 415 QTVKHAWAEAASRMAWPIIASTATTLAVFVPLLFWPGVVGEFMKFLPLTVIICLIASLAM 474

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A+  +  +       +  +      L   +     + ++       GV   I     +  
Sbjct: 475 ALVFLPVLGSTSGGRRARQGNSSGRLMEGYRRVLGLLLRSPGLTLIGVLCVIAVIYAAYA 534

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                   +        Q+ V A   + +    + +  ++                +   
Sbjct: 535 RFNHGVEFFPSVEPDSAQVQVRARGDLSVWERDAIVREVEQRLRGMPEVKALYARSMVQT 594

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                      +        T     + + +   +   I+ 
Sbjct: 595 SSQLAPDVIGVLQFQFTDWFTRRPASAILDDFRDMTSDIAG 635



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 91/268 (33%), Gaps = 18/268 (6%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           I+    + + V  +  V    V     + +      +        L   +    + +   
Sbjct: 236 IEDVMSMPVKVDGDTVVTFGDVAMLQRTFKDPTGFARINGEPALVLEVSKRSGANIIETI 295

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             +  +  +    +P S      +   +  R+++   +  V+ + + +LI +        
Sbjct: 296 AQVRELIDEARPQLPDSLEIRYIMDQSEEVRDILSDLLNNVLTAIVLVLIVVIAAMGPRS 355

Query: 693 ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
           A+  +  L +      G   +   G+  N+  + +++ + G  V+  +VV +       L
Sbjct: 356 AV--MVGLTIPGAFLTGILVIWSMGLTLNIVVLFSLILVAGMLVDGAIVVSE-------L 406

Query: 751 YTTSISFRDLIDKSINETLGRS---VYTSMAAFISVLPMAVWGGSVIGSFA----IPMAF 803
              ++S    +  +  E   R    +  S A  ++V    ++   V+G F     + +  
Sbjct: 407 ADRNLSEGQTVKHAWAEAASRMAWPIIASTATTLAVFVPLLFWPGVVGEFMKFLPLTVII 466

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++ + + ++     +       RA+  
Sbjct: 467 CLIASLAMALVFLPVLGSTSGGRRARQG 494



 Score = 40.4 bits (92), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 68/195 (34%), Gaps = 7/195 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S    L+ GD +      +    V ++           +L  ++ ++ E     +++   
Sbjct: 771 SEFVDLRPGDKTNSIVRVDGQRTVTIKSDLAQGRRVDELLRALQAEMPEPPEGISVKFAG 830

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFALF 714
               +             +++   ML+ +  +F   +    I   ++L     L    + 
Sbjct: 831 ENEDQQQASNFLA--TAFLVAIGLMLLILVTQFNSLYQTFLILSAIVLSTAGVLLGLLVN 888

Query: 715 GIEFNLTAV-AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           G  F +  V    + L G  VN+ +++ D      ++    +   +   ++    L   +
Sbjct: 889 GQSFGIVMVGMGTIALAGIVVNNNIILIDTYN---QMRKDGVEAYEAALETGCLRLRPVL 945

Query: 774 YTSMAAFISVLPMAV 788
            T++   + ++PM +
Sbjct: 946 LTAITTVLGLMPMVL 960


>gi|300742618|ref|ZP_07072639.1| integral membrane protein, MMPL family [Rothia dentocariosa M567]
 gi|300381803|gb|EFJ78365.1| integral membrane protein, MMPL family [Rothia dentocariosa M567]
          Length = 893

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 95/798 (11%), Positives = 226/798 (28%), Gaps = 88/798 (11%)

Query: 104 DSRFKENIADKVTLFLQGVNSKLNVDPKKN----LLVTTTEKEISIVLSQNNIDQVISHA 159
                + ++D++       N        K      +    ++     L+    +     A
Sbjct: 25  PGTETQRLSDELAQRFPDANRGNGQIVVKTDNGSAITEEQKQAFITTLNSLKDENSAVDA 84

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           +       +Q  D     E +  +L +    I+   +Q     +QL     ++       
Sbjct: 85  VSDPFATEQQIADGKKQLEESKPQLDAAPQRIEDGKKQLEEAGKQLKDGKEQLDAA---Q 141

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
               +               + L   + ++ G       +  +       +  +  ++  
Sbjct: 142 KQLDEAREQAKAAGALESMREQLGSQQGQLDGQRAKLEESQKEYDAKSAELADAEKKLPE 201

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
           ++     +  + +  +         +  I       K+  +     E             
Sbjct: 202 QQSEYARKSALLELTSDYRTVSEDNSTAIAVVFFKTKSAETPQADKEKLMEHFKSADLKG 261

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
           L +  +     +    +G      G    +   ++ ++ M+      GL    ++   VI
Sbjct: 262 LKVYFDQNIAESPNVGMG-----IGEVIGIVVALITLIVMLGTLIAAGLPIIMALVGVVI 316

Query: 400 LTLALLSL--LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
             L  LS   L    +   + G++LG+ + +D ++ +  R R        +  S+ +   
Sbjct: 317 GILGTLSFSSLIDMSSTTYMLGMMLGLAVGIDYSLFILNRHRSNLMDGMPLRKSIAVANG 376

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
            + + +  +  T +IA + L   G   +        L + +++  ++++  AM+  I R 
Sbjct: 377 TSGNAVLFAGTTVIIALLALNVTGIPFLGYMGDAAALCVFVAVLISVTLTPAMLSLIGRR 436

Query: 518 KKMKSIDINPLSRFFLIPDC-----IAIQFMRARFWGVGISILFSICSICLLFTHGLNYG 572
              K    +  +   +                     +   ++  +  +  L    +  G
Sbjct: 437 VMSKKTWASIDTPEKIAAHHAEQEKREATPHGWLRIVLAKPVVTILLCVAALGAIAIPMG 496

Query: 573 IDFKGGIQLG--------------------------VLANRPVDLSVVRSNLESLQIGDI 606
               G                               V+A       +  +  E  Q+   
Sbjct: 497 QMRMGLPSAESSQVESTEYQAYQIVKDKFGEGMSGPVVAVAHTPAGMSDAQAEQAQLDIA 556

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQT-------------------RVLEMVKKKITEIVP 647
                    N    +     D                          L  V   +     
Sbjct: 557 HAVEAKDPDNVKTVVPIGQTDDHTLQIFQVIPKHGPSSVETVNLVEKLRQVDVNVQGTDV 616

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITK 706
              +         +S  L +K  + + +      I + + F+     L A    +  I  
Sbjct: 617 RLGVTGLTGGNIDVSNTLAQKLPLYLAVVMGLSFIVLILVFRSILVPLVASVGFLFSILA 676

Query: 707 TLGFF----------ALFGIEFNLTAVAAVL------TLIGYSVNDKVVVYDRMRKNMKL 750
           + G            +LFG+  +   + A L       L G +++ +V +   MR+    
Sbjct: 677 SFGAVVAVYQMGFLGSLFGVH-DPGPILAFLPTLMIGILFGLAMDYQVFLVSGMRE---A 732

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-GSVIGSFAIPMAFGIVVAA 809
           Y      +  +    N  + R V  +M   ISV    ++   ++I      +AFG++V A
Sbjct: 733 YVHGKDAKTAVVAGYNHAV-RVVVAAMIIMISVFGGFIFAESAMIRPIGFGLAFGVLVDA 791

Query: 810 S-SSIFIAAPILLFIYDW 826
               + I   +L  + D 
Sbjct: 792 FVVRMTITPAVLTLLGDK 809


>gi|296269757|ref|YP_003652389.1| acriflavin resistance protein [Thermobispora bispora DSM 43833]
 gi|296092544|gb|ADG88496.1| acriflavin resistance protein [Thermobispora bispora DSM 43833]
          Length = 1065

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/525 (11%), Positives = 156/525 (29%), Gaps = 26/525 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQS-MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  LV+L S+   +    A+P+   Q       P+A                        
Sbjct: 11  NRSLVLLISLALGVLGAFAIPSLKQQLFPSLELPAAFAVAG--------------YPGAA 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        + ++   +I ++F      ++    +   +  +
Sbjct: 57  PEIVEEQVTEPLESAFKGISGVTEITSTSKEGLAQIQVAFDYGTDIDDAVASMQQAVNRI 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L       ++  +T+    +V++                +I R  + ++   E    
Sbjct: 117 KAQLPSGVDPQIIAGSTDDIPVLVIAVAEAGDQQ----AMLGKIERIMVPKLRAIEGVRD 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     Q+    +  ++  L  +   +         +     F       +      
Sbjct: 173 VSVTGARERQVVITPNLMKMAMLGLSPTAIPELLRANGVTIPAGSFTKDGKALTVQTGER 232

Query: 243 VEDKVEISGIHLNGAT----ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           +    ++  ++L        +             +      +         I    A   
Sbjct: 233 IRTVDDLKNLYLMPGAQSAGSTGATAGGDAARAAAAKARAVKPVKLGDVATIEVKEAPAT 292

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                          + +   +          L   L           +          S
Sbjct: 293 SFTRTNGQPTLGVAITMRPDGNAVQISHEVRELLPGLTRDLGDAAELTIVFDQAPYVEHS 352

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                    +     ++V+ + +L  +  LV   SI L+V++ L  L     +L + ++ 
Sbjct: 353 IKDLTTEGLLGLVFAVVVILVFLLSVRSTLVTAVSIPLSVVIALIALWARDYSLNILTLG 412

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+ + IG  VD +I+V E I+      +    ++          +  S +T +   + + 
Sbjct: 413 GLTIAIGRVVDDSIVVLENIKRHLSYGEEKRQAILTAVREVAGAVTSSTLTTVAVFLPIA 472

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           F G   G     FAIT+ +++L S+  +++++  +  + ++  + 
Sbjct: 473 FVGGIVGQLFSQFAITVTVALLASLLVSLTVIPVLAYWFLKTPRF 517



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 69/172 (40%), Gaps = 7/172 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +L  + + + +   L+ + +         ++L  +G++G++ + + +L+++        
Sbjct: 324 ELLPGLTRDLGDAAELTIVFDQAPYVEHSIKDLTTEGLLGLVFAVVVILVFLL---SVRS 380

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L    ++ L +   L          N+  +  +   IG  V+D +VV + ++   +  +
Sbjct: 381 TLVTAVSIPLSVVIALIALWARDYSLNILTLGGLTIAIGRVVDDSIVVLENIK---RHLS 437

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAF 803
                R  I  ++ E  G    +++      LP+A  GG V   F+   +  
Sbjct: 438 YGEEKRQAILTAVREVAGAVTSSTLTTVAVFLPIAFVGGIVGQLFSQFAITV 489



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 72/217 (33%), Gaps = 10/217 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++  +       +        +  +           +V + ++           I    
Sbjct: 807  ADVAVVDGPTRVTRQDGERTATVSGIADAGNLGEVTAKVTDKLESLKLPEGVTWEIGGAS 866

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                K   +L+    + VII    M   +         L  + ++    T  +G      
Sbjct: 867  ADMEKAFADLLLAMALAVIIVYSIM---VATFRSLIQPLILLVSIPFAGTGAIGLLLATD 923

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
                + A+  +L LIG  V + +V+ D + +        +   D + +     L   + T
Sbjct: 924  TALGVPALIGMLMLIGIVVTNAIVLIDLINQYRAQ---GMGIVDAVIEGGRRRLRPILMT 980

Query: 776  SMAAFISVLPMAV----WGGSVIGSFAIPMAFGIVVA 808
            ++A   ++ PMA+     GG +    AI +  G+V +
Sbjct: 981  AVATICALTPMALGVTGSGGFISRPLAIVVIGGLVSS 1017



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/555 (8%), Positives = 142/555 (25%), Gaps = 60/555 (10%)

Query: 3    NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMP-KNRISLGLDLRGGSHLVLEVD 61
                  ++  ++   G +   P      +     +      R+  G DL           
Sbjct: 551  RRRLTTVVIGLVVFAGTMALTPALKTNFLDSTGNNTTQITQRMPAGTDL----------- 599

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-----------RQIQNKITLSFADSRFKEN 110
                V        +++   +        ++              Q   +++ A+      
Sbjct: 600  ---AVTDEAAKKVEDVLRSVPGIEAYQVTVGGGDMLAGLGGGSDQATYSITLAEGADTPA 656

Query: 111  IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
            I  ++   L  V   +                I ++L   + D + + A           
Sbjct: 657  IEQELRDRLAKV-PDIGEVTVGLSHGGFNSDRIEVILKGADADALRTAAT--------TV 707

Query: 171  IDQIGISESTIQRLGSHRILIQLPGEQ-DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
             D +   E       +          Q D ++      + A +                 
Sbjct: 708  RDAMAEVEGMRDVTSNLEESAPRVEVQVDRAKAAARGLSEAAIGQLVA------------ 755

Query: 230  VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                      +      ++  G   +      D       V        +         +
Sbjct: 756  -------QAFRGTPIGSIDGDGRPTDIVLRMGDAPASVTEVRNLALPTASGMVKLSDVAD 808

Query: 290  IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
            +          R         +  +    +    T +    L ++     +  ++     
Sbjct: 809  VAVVDGPTRVTRQDGERTATVSGIADAGNLGEV-TAKVTDKLESLKLPEGVTWEIGGASA 867

Query: 350  RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                    + +      A+   +V  ++          L+   SI       + LL    
Sbjct: 868  D----MEKAFADLLLAMALAVIIVYSIMVATFRSLIQPLILLVSIPFAGTGAIGLLLATD 923

Query: 410  ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
              L +P++ G+++ IG+ V + I++ + I +   +   +  ++  G  R    I  + + 
Sbjct: 924  TALGVPALIGMLMLIGIVVTNAIVLIDLINQYRAQGMGIVDAVIEGGRRRLRPILMTAVA 983

Query: 470  ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             + A   +     G+    +  + + ++  + ++  +   ++  +    +     +    
Sbjct: 984  TICALTPMALGVTGSGGFISRPLAIVVIGGLVSSTLLTLVLVPTLYTMVERTKERMRRTP 1043

Query: 530  RFFLIPDCIAIQFMR 544
            +     D     + +
Sbjct: 1044 KPEKADDDSVKVYDK 1058


>gi|145295778|ref|YP_001138599.1| preprotein translocase subunit SecD [Corynebacterium glutamicum R]
 gi|140845698|dbj|BAF54697.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 633

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 112/590 (18%), Positives = 215/590 (36%), Gaps = 65/590 (11%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + L+ +I   G+       L        P         LG+DL+GG+ + L   
Sbjct: 21  RWPKRAIALFVLIVV-GVYAL---VLLTGDRSATP--------KLGIDLQGGTRVTLVPQ 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR--FKENIADKVTLFL 119
             D     L      L + +   G+   S+    N + ++         +++     L  
Sbjct: 69  GQDPTQDQLNQARTILENRVNGMGVSGASVVADGNTLVITVPGEDTAQAQSLGQTSQLLF 128

Query: 120 QGVNSKLNVDPK--------------KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
           + V      D                +  ++T  +   S+      +    +   E++ E
Sbjct: 129 RPVGQAGMPDMTTLMPELEEMANRWVEYGVITEEQANASLEEMNTAVASTTAVEGEEATE 188

Query: 166 IIRQRIDQIGISESTIQRLGSHRILIQLPGE------QDPSRLRQLLGTTAKMSFHKVLP 219
                +    + E       + R               DP+ ++    +  + +  ++ P
Sbjct: 189 PEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPT-VQIAASSLMQCTTDEMDP 247

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLV------------EDKVEISGIHLNGATANF------ 261
                     +     + G  Y++            E+   ++G  ++            
Sbjct: 248 LAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPITGGFNAQ 307

Query: 262 -DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IPSGKAQI 319
                          E G+  +  +T   + + +A+ LD +V++APVI  A        I
Sbjct: 308 SGQMEISFAFKSGDGEEGSATWSSLTSQYLQQQIAITLDSQVISAPVIQSATPVGSATSI 367

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIV------EERNVGADLGSDSIYKGTCAIVAGLV 373
           +G+FT   A  LA  LR G+LP+               V   LG+ S+  G  A + G+ 
Sbjct: 368 TGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLKAGLIAGIVGIA 427

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLS----LLGATLTLPSIAGIVLGIGLAVD 429
           L+ +F+   Y  +G V+ F++F   +L   LL      +G +L L  IAG+++GIG   D
Sbjct: 428 LVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLIIGIGTTAD 487

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           S ++  ERI++E R+ +S   +    +  A  TI   N+  L+  +V++    G V+GFA
Sbjct: 488 SFVVFYERIKDEIREGRSFRSAAPRAWESAKRTIVTGNMVTLLGAIVIYLLAVGEVKGFA 547

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
            T+GL+ +  +     I   ++I   R        +N + R   + +   
Sbjct: 548 FTLGLTTVFDLVVTFLITAPLVILASRNPSFAKPSVNGMGRVMKLVEERR 597



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 72/214 (33%), Gaps = 8/214 (3%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +     Q         +                   T  V P +    ++ G++ 
Sbjct: 362 GSATSITGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLKAGLIA 421

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA----LFGIEFNLTAVAAVLT 728
            I+    + I+++  ++  F   ++ TL        G         G   +L  +A ++ 
Sbjct: 422 GIVGIALVAIFVFAYYRV-FGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLII 480

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG + +  VV Y+R++  ++      SFR    ++        V  +M   +  + + +
Sbjct: 481 GIGTTADSFVVFYERIKDEIRE---GRSFRSAAPRAWESAKRTIVTGNMVTLLGAIVIYL 537

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                +  FA  +    V     +  I AP+++ 
Sbjct: 538 LAVGEVKGFAFTLGLTTVFDLVVTFLITAPLVIL 571


>gi|107026424|ref|YP_623935.1| acriflavin resistance protein [Burkholderia cenocepacia AU 1054]
 gi|116692388|ref|YP_837921.1| acriflavin resistance protein [Burkholderia cenocepacia HI2424]
 gi|105895798|gb|ABF78962.1| acriflavin resistance protein [Burkholderia cenocepacia AU 1054]
 gi|116650388|gb|ABK11028.1| acriflavin resistance protein [Burkholderia cenocepacia HI2424]
          Length = 1055

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/636 (11%), Positives = 170/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  P+                  ++   
Sbjct: 8   LRRPYTFIVMAIMIVL-----ATPLALMRTPVDVLPAINIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           +   F    +      +        +        +       + +        +    + 
Sbjct: 50  NYSGFSATEMTNRITSVHERILTTTVNNIQHVESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +   +   +     Q+ 
Sbjct: 110 VSSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSQTLSEQS--LADIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  L+    T A +       N         +     
Sbjct: 168 TVPGVQIPFPYGGRTRVVAIDLDPQALQAKGLTPADIVNAVNAQNLVLPTGTAKMGQTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +IS                    ++    +     +      +    A
Sbjct: 228 RIDTNASADTVADIS--------------------NLPVQTINGATTYLREVAAVRDGFA 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLISILKSGDASTLKVVSDLKALLPKVIPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTNLHDAILEGAGEIAVPALVSTLCICIVFV 447

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + + R ++  +   +  SRF 
Sbjct: 448 PMFFLTGVARFLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPQQANTGADHSTSRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I       F R R W + +  +  +              +       LG       D  
Sbjct: 508 RIHHAFNHAFERLRAWYIVLLTILLVRRRFYALCFLGFCVLSTGLVFMLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V     P D 
Sbjct: 568 NLRLHVRAPTGYRIEETARLADQVERVIRATVPPDE 603



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 63/152 (41%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  ++ +     W   L    ++ L I  +L   +  G   N+  +  +   +G
Sbjct: 338 ALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + + +++ L     +  D I +   E    ++ +++   I  +PM    G
Sbjct: 398 ILVDDATVTIENIERHLHL---GTNLHDAILEGAGEIAVPALVSTLCICIVFVPMFFLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  +V A  +S  ++  ++  +
Sbjct: 455 VARFLF-VPLAEAVVFAMLASYVLSRTLVPTL 485



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  I+ +   +        + G   ++ A+   +  +G
Sbjct: 890  VAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 949

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +              ++    +   + T++A  I ++PMA+   
Sbjct: 950  VATANSILVVSFARQRLAA---GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1006

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1007 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1035


>gi|325928385|ref|ZP_08189580.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
 gi|325541261|gb|EGD12808.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
          Length = 1028

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/646 (13%), Positives = 187/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATADGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V      D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AVRDDFPEDLQRFHVFKWSSSDEPVLKVRLASQTDLTGAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S                         N 
Sbjct: 172 AKVEISGAPPNEVEIAIAPDRLTAHDLSLNDLSERL-------------------GKLNF 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +   +++ +G  +            +    +      A+         +      +  G
Sbjct: 213 SVSAGQIDDNGQRIRVQPIGELRDLQELRELVL----NAKGVRLGDIAEVRLKPTRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +     + A      +RA      + +    N   A   S 
Sbjct: 269 RRLDGRPAIGLDVYKERSANLVEVSKAALKEVEDIRAQPALRDVQVKVIDNQGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 AELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPDQPQLAALLGTRSVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     + S            
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTSEHGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G D      +            +
Sbjct: 509 AKVLAWTLAHRGWSVTGIILVSAISLVPMKLTKVDMFGGDGGNEAFIQYQWKGSYTREQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +                G +   T     VK 
Sbjct: 569 GEEIGRVENYLQANRARYHITQIYSWFSEVEGSNTVVTFDASKVKD 614



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 86/237 (36%), Gaps = 11/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLSTIQNTE 655
            +L  +QI   + Q     +   + ++    + V        ++  +     P       +
Sbjct: 768  SLVEVQIRPAATQIGRTNRQTTLTIKANLAEKVTMPEARAAMEAPLKAMSFPAGYSYTFD 827

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E + + +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 828  GGDYQNDGEAMNQMVFNLVIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 887

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +     L    +     + +   E L   + 
Sbjct: 888  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN---NLRRRGMGRTQALVEGSRERLRPIMM 944

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T   A ++++P+          G      A  +A G+V +   S+     I   + D
Sbjct: 945  TMGTAILAMVPISLTSTTMFSDGPPYFPMARAIAGGLVFSTVVSLLFLPTIYAILDD 1001



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +    +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDIRAQPALRDVQVKVIDNQGKAVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPDQPQLA-----ALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|241203825|ref|YP_002974921.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240857715|gb|ACS55382.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 1038

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/584 (11%), Positives = 162/584 (27%), Gaps = 40/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +   GL            +   P       I+            L   
Sbjct: 8   QRPVATTLLAIGVILAGLA-----GYQLVPVAALPQVDFPT-IN--------VSAQLSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +     +    +        S       I L F  SR  +  A  V   +  
Sbjct: 54  SPQTMATSVSTPLIKQFETIPGITEISASSSLGSTSIVLQFDLSRNIDAAAADVQAAISH 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  +         T      ++L     + +    ++   E I      +      
Sbjct: 114 ATRQLPDNLTTPPSYRKTNPADAPVMLLSVQSNTMPRSKLDDIAENI--ISPSLSTLPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  E DP++L         ++      N+ +                 
Sbjct: 172 AQVSVYGAQTYAVRVEVDPNKLLTRGIGIDTVNKALAAANSQQPVGTLQ----------- 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    +       TAN    + +    +                ++   +     G
Sbjct: 221 ---------NNSQSMTITANTQSTSAEQFRSLVIANPNGAPIHLGDIADVQDSVENQYTG 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    ++        L A   P    +V          + S
Sbjct: 272 SWYDGQRGIILAIQRQPDANTVDVVDAINAKLPQLHAEIPPSVNTVVMNDAAKPIRDAIS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +  GLV++V+++   +    ++   ++ L++I T  ++ +LG ++   S+ G+
Sbjct: 332 DVKFTLLLTIGLVVLVIYLFTGHATATIIPGLAVPLSLISTFGMMYVLGYSIDNISLLGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL VD  I++ E I     +   V  +   G      TI   +++ +   + +   
Sbjct: 392 TLAVGLVVDDAIVMLENILRHVEEGMPVREAAIKGAGEVSYTIISMSVSLIAVFIPILLM 451

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG   R    F + + ++I+ S   ++++   +   +  ++    + I      F     
Sbjct: 452 GGVVGRVFNEFGMVVAIAIISSAIVSLTVTPMLASRLSNHQSRPPLIIRIFDAGFERTLR 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              + +          +   + S+ L     +     F     +
Sbjct: 512 GYDRAVGWCLRHRPTILGVFLASVALTIYFFMTLPTSFFPQEDI 555



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/238 (12%), Positives = 86/238 (36%), Gaps = 12/238 (5%)

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
               +  +     +    + L  Q         V++ +  K+ ++          +V   
Sbjct: 262 QDSVENQYTGSWYDGQRGIILAIQRQPDANTVDVVDAINAKLPQLHAEIPPSVNTVVMND 321

Query: 661 ISRELIR-----KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            ++ +       K  + + I  + ++IY+         +     + L +  T G   + G
Sbjct: 322 AAKPIRDAISDVKFTLLLTIGLVVLVIYL-FTGHATATIIPGLAVPLSLISTFGMMYVLG 380

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              +  ++  +   +G  V+D +V+ + +   ++     +  R+   K   E     +  
Sbjct: 381 YSIDNISLLGLTLAVGLVVDDAIVMLENI---LRHVEEGMPVREAAIKGAGEVSYTIISM 437

Query: 776 SMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           S++     +P+ + GG V      F + +A  I+ +A  S+ +   +   + + +++ 
Sbjct: 438 SVSLIAVFIPILLMGGVVGRVFNEFGMVVAIAIISSAIVSLTVTPMLASRLSNHQSRP 495



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 93/265 (35%), Gaps = 6/265 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                +    +       +         V  SN   +Q            +     + +  
Sbjct: 749  IVEYDTSKPWDDQKLSEIRVASANGSLVPLSNFAHVQRTTGPVTINQTGQLVSTTVSFNL 808

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + V+ +     + +   +I   + +  +     +I  +        ++ + + + + + 
Sbjct: 809  PEGVSLSDATAAIDQIKKDISVPADVFTSYGGTAQIFEQSQGNTPYLILAAVLTIYVVLG 868

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++ +   L  ++ L       L    + G + ++ A+  +L LIG    + +++ D  
Sbjct: 869  VLYESFIHPLTILSGLPAAAFGALLALKIMGFDLSIIALIGLLMLIGIVKKNAIMMIDVA 928

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPM 801
             + M+  TT       I ++        + T+  A +  LP+A+  G    +     I +
Sbjct: 929  VETMR--TTGEKATAAIHEACVRRFRPIMMTTFCALLGALPIALGTGASSELRQPLGIAV 986

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW 826
              G++V+   ++FI   I + +  +
Sbjct: 987  VGGLIVSQMLTLFITPVIFVEMDRF 1011


>gi|254248498|ref|ZP_04941818.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
 gi|124874999|gb|EAY64989.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
          Length = 1055

 Score =  137 bits (343), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 73/636 (11%), Positives = 171/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  P+                  ++   
Sbjct: 8   LRRPYTFIVMAIMIVL-----ATPLALMRTPVDVLPAINIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           +   F    +      +        +        +       + +        +    + 
Sbjct: 50  NYSGFSATEMTNRITSVHERILTTTVNNIQHVESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +   +   +     Q+ 
Sbjct: 110 VSSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LADIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  L+    T A +       N         +     
Sbjct: 168 TVPGVQIPFPYGGRTRVVAIDLDPQALQAKGLTPADIVNAVNAQNLVLPTGTAKMGQTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +IS                    ++    +     +      +    A
Sbjct: 228 RIDTNASADTVADIS--------------------NLPVQTINGATTYLREVAAVRDGFA 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLISILKSGDASTLKVVSDLKALLPKVIPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTNLHDAILEGAGEIAVPALVSTLCICIVFV 447

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + + R ++  +   +  SRF 
Sbjct: 448 PMFFLTGVARFLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPQQANTGADHSTSRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I       F R R W + +  +  +              +     + LG       D  
Sbjct: 508 RIHHAFNHAFERLRAWYIVLLSILLVRRRFYALCFLGFCVLSTGLVLVLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V     P D 
Sbjct: 568 NLRLHVRAPTGYRIEETARLADQVERVIRATVPPDE 603



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 54/490 (11%), Positives = 148/490 (30%), Gaps = 23/490 (4%)

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +     +         +   +VL     ++      L A     ++VI   +  S    T
Sbjct: 1   MWIVNLALRRPYTFIVMAIMIVLATPLALMRTPVDVLPAINIPVISVIWNYSGFSATEMT 60

Query: 412 LTLPSIAGIVLGIGL-----AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
             + S+   +L   +        +++     ++   +   +V  ++    S A + +   
Sbjct: 61  NRITSVHERILTTTVNNIQHVESTSLPGIAVVKVFLQPGANVQTAIAQTVSSAQAIVRQM 120

Query: 467 NITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
              A    V+ +      V    ++   ++       I++       I            
Sbjct: 121 PQGATPPLVITYSASSIPVIQLGLS-SKTLSEQSLADIALNFLRPQLITVPGVQIPFPYG 179

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISIL------------FSICSICLLFTHGLNYGID 574
             +R   I         +       ++ +                +   + T+     + 
Sbjct: 180 GRTRVVAIDLDPQALQAKGLTPADIVNAVNAQNLVLPTGTAKMGQTEYRIDTNASADTVA 239

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
               + +  +      L  V +  +         +        +  L+     ++     
Sbjct: 240 DISNLPVQTINGATTYLREVAAVRDGFAPQTNVVRQNGQRGVLISILKSGDASTLKVVSD 299

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFA 693
           L+ +  K+   +P                  ++  I   +I + +  ++ +     W   
Sbjct: 300 LKALLPKVIPTLPEGLTITPLFDQSVFVNAAVQGVIHEALIAAVLTAMMILLFLGNWRST 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    ++ L I  +L   +  G   N+  +  +   +G  V+D  V  + + +++ L   
Sbjct: 360 LIIAISIPLSIFTSLIALSALGETINIMTLGGLALAVGILVDDATVTIENIERHLHL--- 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             +  D I +   E    ++ +++   I  +PM    G     F +P+A  +V A  +S 
Sbjct: 417 GTNLHDAILEGAGEIAVPALVSTLCICIVFVPMFFLTGVARFLF-VPLAEAVVFAMLASY 475

Query: 814 FIAAPILLFI 823
            ++  ++  +
Sbjct: 476 VLSRTLVPTL 485



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  I+ +   +        + G   ++ A+   +  +G
Sbjct: 890  VAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 949

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +              ++    +   + T++A  I ++PMA+   
Sbjct: 950  VATANSILVVSFARQRLAA---GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1006

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1007 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1035


>gi|296132721|ref|YP_003639968.1| protein-export membrane protein SecD [Thermincola sp. JR]
 gi|296031299|gb|ADG82067.1| protein-export membrane protein SecD [Thermincola potens JR]
          Length = 412

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 38/208 (18%), Positives = 85/208 (40%), Gaps = 4/208 (1%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G +  +      V  +   +        T+ VGP +  + + K     I+  IA+LI++
Sbjct: 204 NGYNTLEEAAKMAVLLRSGALPVNMEKVYTQTVGPTLGADSLAKSTKAGIVGIIAILIFM 263

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              ++    L A   L       LG  A       L  +A  L  IG +V+  +++++R+
Sbjct: 264 IAYYRIP-GLIANVALAAYALIVLGLLAALQATLTLPGIAGFLLSIGMAVDANIIIFERV 322

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           ++ ++      S R  I+   +        +++   I+   +  +G   I  FA+ ++ G
Sbjct: 323 KEELRE---GNSLRRSIESGFSRAFWTVFDSNVTTLIAAAILYYFGTGAIRGFAVTLSIG 379

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           I+ +  ++I +   +L  + D +    +
Sbjct: 380 ILASMFTAITLTRFMLRNLADSKLITNK 407



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 136/384 (35%), Positives = 223/384 (58%), Gaps = 34/384 (8%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +         V   ++++   +I +R+++ G+ E  IQR G  R++++L G ++P   
Sbjct: 45  VVMEAVDTPEAPVTDDSLDRVKAVIERRVNETGVKEPIIQREGKRRLIVELAGIKNPDAA 104

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
             L+G TA + F                               KV +SG  L  A A  +
Sbjct: 105 IDLIGKTAVLQFKTSD--------------------------GKVVVSGSDLKDAQAAKN 138

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIG--------KPLAVVLDGRVLTAPVINQAIPS 314
           P T +  V + F++ G ++F +VT + +         + + + LD + L  PV+ + IP+
Sbjct: 139 PTTGEIYVALEFNKEGTKKFADVTSELVQKYSETDPRRRIGIYLDQQQLQNPVVREPIPN 198

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G+AQI+G  T+E A  +A +LR+G+LP+ +  V  + VG  LG+DS+ K T A + G++ 
Sbjct: 199 GRAQINGYNTLEEAAKMAVLLRSGALPVNMEKVYTQTVGPTLGADSLAKSTKAGIVGIIA 258

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           I++FMI  Y   GL+A+ ++    ++ L LL+ L ATLTLP IAG +L IG+AVD+NI++
Sbjct: 259 ILIFMIAYYRIPGLIANVALAAYALIVLGLLAALQATLTLPGIAGFLLSIGMAVDANIII 318

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
            ER++EE R+  S+  S++ GFSRA+ T+FDSN+T LIA  +L++FG GA+RGFA+T+ +
Sbjct: 319 FERVKEELREGNSLRRSIESGFSRAFWTVFDSNVTTLIAAAILYYFGTGAIRGFAVTLSI 378

Query: 495 SILISMFTAISIVRAMMIFIIRYK 518
            IL SMFTAI++ R M+  +   K
Sbjct: 379 GILASMFTAITLTRFMLRNLADSK 402



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 50/411 (12%), Positives = 123/411 (29%), Gaps = 34/411 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-VDEDD--FV 66
           L S++  I L+      L    + +         I+LGLDL+GG H+V+E VD  +    
Sbjct: 6   LISLLLTIALIAVSGYLLIHFKVFQ-------KHINLGLDLQGGLHVVMEAVDTPEAPVT 58

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSK 125
           +  L      +   + + G+    +++    ++ +  A  +  +   D +          
Sbjct: 59  DDSLDRVKAVIERRVNETGVKEPIIQREGKRRLIVELAGIKNPDAAIDLI---------- 108

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                   L   T++ ++ +  S     Q   +     + +  +        E T +   
Sbjct: 109 ---GKTAVLQFKTSDGKVVVSGSDLKDAQAAKNPTTGEIYVALEF-----NKEGTKKFAD 160

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV-- 243
               L+Q   E DP R   +     ++    V                 +      ++  
Sbjct: 161 VTSELVQKYSETDPRRRIGIYLDQQQLQNPVVREPIPNGRAQINGYNTLEEAAKMAVLLR 220

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
              + ++   +   T                  +G              P  +       
Sbjct: 221 SGALPVNMEKVYTQTVGPTLGADSLAKSTKAGIVGIIAILIFMIAYYRIPGLIANVALAA 280

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
            A ++   + + +A ++          +   + A  +  +    E R   +   S     
Sbjct: 281 YALIVLGLLAALQATLTLPGIAGFLLSIGMAVDANIIIFERVKEELREGNSLRRSIESGF 340

Query: 364 GTCAIVAG---LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                      +  ++   I+ Y   G +  F++ L++ +  ++ + +  T
Sbjct: 341 SRAFWTVFDSNVTTLIAAAILYYFGTGAIRGFAVTLSIGILASMFTAITLT 391


>gi|295700562|ref|YP_003608455.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
 gi|295439775|gb|ADG18944.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
          Length = 1022

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/519 (10%), Positives = 141/519 (27%), Gaps = 40/519 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GL       + Q                                
Sbjct: 8   RRPVLASVVSLLILVLGLRALAVLKVSQYPQTENAVVTITTA--------------YYGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    +   +  +       +     + I  +   +        ++   +  
Sbjct: 54  NPDTIAGFITQPLEAAIAQAQGIDYMSSTSITGVSTIVATLRLNYDANRALTEINTQIGS 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++ +L   T +    +        + S+ +  +  ++R    ++   +   
Sbjct: 114 VRNQLPPQAQQPVLTVQTGQTTDAMYMGFYSSVLPSNNV--TDYLLRVVKPKLDSIQGVQ 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D ++L     + + +       N                     
Sbjct: 172 TAEVLGGRQFAMRAWLDSAQLAAHGVSASDVFTALGNNNYLATLGTTK------GQMVSV 225

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   ++               T      +   +            N+           
Sbjct: 226 DLEAGTDL--------------HTVDDFKQLVVKQKNGSIVRLEDVANVVLGADSYDFNV 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +          +   L+          +          +   
Sbjct: 272 AFSGKRSVFIGIKVAPDANILDVASRVKTVFPDLQKQFPTGMTGDIVYDATDFVNTAIRE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V IV+F+ +   +  +V   ++ L++I T  ++  LG ++ L ++  +V
Sbjct: 332 VIKTLVEALVIVTIVIFLFLGSFRAVIVPLIAMPLSLIGTFFVMQALGYSINLLTLLALV 391

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +    +   ++ F +  +        I    +  +     + F 
Sbjct: 392 LAIGLVVDDAIIVVENVDRHMKHEGKTPFDAALIAARELGGPIVAMTVVLIAVYAPIGFQ 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           G   G     FA T+  ++ +S   A+++   M     R
Sbjct: 452 GGLTGALFTEFAFTLAGAVTVSGVIALTLSPMMCSRFFR 490



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 82/235 (34%), Gaps = 6/235 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V L  V + +      D +         F+        + +     ++ V   + +  
Sbjct: 250 SIVRLEDVANVVLGADSYDFNVAFSGKRSVFIGIKVAPDANILDVASRVKTVFPDLQKQF 309

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P     +            IR+ I  ++ + + + I I++    +   +  +  + L + 
Sbjct: 310 PTGMTGDIVYDATDFVNTAIREVIKTLVEALVIVTIVIFLFLGSFRAVIVPLIAMPLSLI 369

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T       G   NL  + A++  IG  V+D ++V + +  +  +     +  D    + 
Sbjct: 370 GTFFVMQALGYSINLLTLLALVLAIGLVVDDAIIVVENV--DRHMKHEGKTPFDAALIAA 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            E  G  V  ++       P+   G   G++   FA  +A  + V+   ++ ++ 
Sbjct: 428 RELGGPIVAMTVVLIAVYAPIGFQGGLTGALFTEFAFTLAGAVTVSGVIALTLSP 482



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 19/166 (11%), Positives = 70/166 (42%), Gaps = 7/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++ ++++ I + + +  +F+ +   +  + ++ + +   L F  +     N+     ++T
Sbjct: 848  VITLLLATIIVFLALAAQFESFRDPIVILISVPMALFGALIFINIGLTTLNIYTQVGLVT 907

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G      +++     +  +        R+ ++++    L   + T+ A  + V+P+ +
Sbjct: 908  LMGLVSKHGILIVQFANELQRA---GRGKREAVEEAAGVRLRPILMTTAAMVLGVVPLVI 964

Query: 789  WGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G+         + +  G+ +    ++F+   + +F+     + A
Sbjct: 965  ASGAGAAGRNAMGLVIFTGMSIGTLFTLFVVPAMYMFLAADHQRRA 1010


>gi|264679641|ref|YP_003279548.1| acriflavin resistance protein [Comamonas testosteroni CNB-2]
 gi|262210154|gb|ACY34252.1| acriflavin resistance protein [Comamonas testosteroni CNB-2]
          Length = 1057

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/542 (12%), Positives = 153/542 (28%), Gaps = 38/542 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +  +G +        Q  +   P                     L    
Sbjct: 10  RPIATLLLTIGMALVGGVA-----YFQLPVAPLPQVDYPTI---------SVTASLPGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S      +ITL F  +R  ++ A  V   +   
Sbjct: 56  PDTMAATVATPLERALGAIAGVNEMTSSSSMGSTRITLQFDLTRTVDSAAHDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L      N          + ++    +        +           ++   E   Q
Sbjct: 116 RTLLPSGMPGNPTYRKVNPADAPIMI-LALTSQSLTRGQMYDAASTVLAQKLAQVEGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +   L  +  E DP RL     +   +       N ++                   
Sbjct: 175 ASINGGALPAVRVELDPVRLAANGVSLDSVRTAITATNANRPLGAVERE----------- 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                     H      N   +T      +                ++   +  + +  V
Sbjct: 224 ---------DHYWQVATNDQARTAAEYAPLVLRWNNGNAVRLSDVADVTDSVQDIRNYGV 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    +   LRA   P     V          S    
Sbjct: 275 MNGKPAVLLQVFKQPDANILQAVDKVRAMLPQLRASINPAIDVTVISDRTPTLRASVKEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    I   LV++V+F+ +   +  L+   ++  +++ T  ++ L G TL   S+  + +
Sbjct: 335 QNALLISIALVIMVVFVFLRRLRATLIPAVAVPASLMGTFGVMYLCGYTLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E +     + ++   +   G      T+   +++ +   V + F   
Sbjct: 395 AAGFVVDDAIVVLENVMRHMERGKTAMQAAIEGAREIGFTVVSMSLSLIAVFVPILFMAG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+ M  +IL+SM  +++    M   ++R    +       +R        A
Sbjct: 455 IVGRFFREFAVVMSAAILVSMIISLTTTPMMCAALLRTPAEEERRRAERARRPFTRRWDA 514

Query: 540 IQ 541
           + 
Sbjct: 515 LW 516



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 79/235 (33%), Gaps = 7/235 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V    +S+Q               L   +    + +     +  +  ++   +
Sbjct: 252 NAVRLSDVADVTDSVQDIRNYGVMNGKPAVLLQVFKQPDANILQAVDKVRAMLPQLRASI 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDIT 705
             +             R  +++    ++IS   +++ ++    +    L     +   + 
Sbjct: 312 NPAIDVTVISDRTPTLRASVKEVQNALLISIALVIMVVFVFLRRLRATLIPAVAVPASLM 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T G   L G   +  ++ A+    G+ V+D +VV + +   M+      +      +  
Sbjct: 372 GTFGVMYLCGYTLDNLSLMALTVAAGFVVDDAIVVLENV---MRHMERGKTAMQAAIEGA 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
            E     V  S++     +P+    G V      FA+ M+  I+V+   S+    
Sbjct: 429 REIGFTVVSMSLSLIAVFVPILFMAGIVGRFFREFAVVMSAAILVSMIISLTTTP 483



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 91/248 (36%), Gaps = 6/248 (2%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                    +  +    +                   + Y    +V+ ++  + ++  + E
Sbjct: 787  FVNSAGQQIPLTAFARITTSTTPLSVQHQSGTPASTVSYNLAPNVSLSQANDAIRNAMLE 846

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILD 703
            +    +I+ +        ++ +    + ++ + I + + + I ++     L  ++TL   
Sbjct: 847  LGVPVSIRGSFSGSAGAFQQALAGQPLLILAAIITIYLVLGILYENLVHPLTILSTLPSA 906

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                L     F  EF+L A   V+ LIG    + +++ D   +  +      +    I +
Sbjct: 907  GVGALLALMWFKTEFSLIAFIGVILLIGLVKKNAIMMIDFALE--REKGGHATAAQAIYR 964

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            + +  L   + T+MAA    LP+A+    G  +     I +  G++++   +++    + 
Sbjct: 965  ACHLRLRPILMTTMAALFGALPLALGRGDGAELRQPLGIAIVGGLLLSQLLTLYTTPVVY 1024

Query: 821  LFIYDWRA 828
            + +   R 
Sbjct: 1025 VLLDRVRR 1032


>gi|294340293|emb|CAZ88669.1| Cation efflux system protein cusA czcA or silA [Thiomonas sp. 3As]
          Length = 1051

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/594 (11%), Positives = 163/594 (27%), Gaps = 38/594 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N  L ++ +++     ++A+ N    + L+  P   P   I                   
Sbjct: 12  NRSLTVIGALMLLAAGILAVRN----TPLEAIPDISPTQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +    +     +              + + + F D        + V  +L  V 
Sbjct: 59  QVVQDQVTYPLETTLQSVPGARAVRGYSMFGDSFVYVIFKDGTNIYQARNLVLQYLSQVQ 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           SKL       L   ++  +   +              + +         Q+       + 
Sbjct: 119 SKLPPGVTPALGPDSSGVDWVYMY-ALTDTGGTQDLSQLTTLQNWFLKYQLQGIPGVAEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ +     +P  L     T  ++       N    G +  +            +
Sbjct: 178 ATVGGMVKEYQVVVNPQALLAYNLTLPQVEDAIRAANGETSGSVVDLGEASYMVRTTGYI 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               ++    L                       G     +        P        + 
Sbjct: 238 RSLRDLENAPLAA-------------------RGGVPLTLKDVARVQFGPELPNSAADLN 278

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   I       + +  I         ++    P    +           +     
Sbjct: 279 GEGAVVGGIVMMNQGSNADAIIRRVEDKIRAIQPSLPPGVKIVTTYSQAPLIQRAIHTLT 338

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                 + +V +V F+ +L  +  LVA  S+ L ++    ++   G    + S+ GI + 
Sbjct: 339 EKLLEESLIVALVSFLFLLRARSALVAIVSLPLGILAAFLVMWAQGIPANIMSLGGIAIA 398

Query: 424 IGLAVDSNILVNERIREENRK--NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           IG   D+ I++ E + +   +      +    +  S     +F S +   ++ + +F  G
Sbjct: 399 IGAMTDAAIVMIENMHKHMEQDPGADPWMKARVAASEVGPALFFSLLIIAVSFLPVFALG 458

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R  A T   ++  +   +I++V  +M + IR                 +   +
Sbjct: 459 GEEGKLFRPLAFTKTYAMAAAAILSITLVPLLMAWFIRGHIRPEGKNPLNQVLIWLYRPL 518

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               +RA +  + ++ +            G  +      G  L +  ++   +S
Sbjct: 519 IHGVLRAPWVVIVLAFVAVASLYFPWKHLGSEFMPPLNEGTLLYMPVSQDPSIS 572



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 77/216 (35%), Gaps = 4/216 (1%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +V +           RV + ++     + P   I  T    P I R +       +  S 
Sbjct: 287 IVMMNQGSNADAIIRRVEDKIRAIQPSLPPGVKIVTTYSQAPLIQRAIHTLTEKLLEESL 346

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           I  L+      +   AL AI +L L I          GI  N+ ++  +   IG   +  
Sbjct: 347 IVALVSFLFLLRARSALVAIVSLPLGILAAFLVMWAQGIPANIMSLGGIAIAIGAMTDAA 406

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VI 794
           +V+ + M K+M+    +  +      + +E      ++ +   +S LP+   GG    + 
Sbjct: 407 IVMIENMHKHMEQDPGADPWMKA-RVAASEVGPALFFSLLIIAVSFLPVFALGGEEGKLF 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              A    + +  AA  SI +   ++ +      + 
Sbjct: 466 RPLAFTKTYAMAAAAILSITLVPLLMAWFIRGHIRP 501



 Score = 40.4 bits (92), Expect = 1.1,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 57/169 (33%), Gaps = 14/169 (8%)

Query: 671  VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA--LFGIEFNLTAVAAVLT 728
            + V      + + ++  FK    + AI  L L ++   GF+     G + ++      + 
Sbjct: 866  IVVPAVIGLIALLLYFNFKNITEV-AIILLTLPLSLVGGFWYVDWLGYKLSVAVGVGFIA 924

Query: 729  LIGYSVNDKVVVY-------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
              G +    VV+         R RK      T    +  + +     L     T      
Sbjct: 925  TAGVASEFGVVMLLYLDAALAR-RKAHDALNTWDDLKQTVVEGTLLRLRPMAMTLTMVVG 983

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +LP+      G  V+   A PM  G++ AA  ++ +   +       R
Sbjct: 984  GLLPIMFSEGAGADVMKRIAAPMVGGMLTAALLALLVIPAVYALWQKRR 1032


>gi|212635116|ref|YP_002311641.1| AcrB/AcrD/AcrF family protein [Shewanella piezotolerans WP3]
 gi|212556600|gb|ACJ29054.1| AcrB/AcrD/AcrF family protein [Shewanella piezotolerans WP3]
          Length = 1022

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/515 (12%), Positives = 153/515 (29%), Gaps = 38/515 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L  +I   GLL A         + +FP     + +                 
Sbjct: 6   KKPILAIVLSLVIVAAGLLAA-----KNIAVLQFPQIESSSLV---------ITTEYTGV 51

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+ +  + +   +        S     + +T     +        ++T  L  
Sbjct: 52  SAETVQGFVTVPIERVAMTIPGVDYVDSSTTAGSSTVTAWLRLNEDSTAALSELTSRLSQ 111

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++ +L    +   +              +     ++ A E +  + R+   Q+   E   
Sbjct: 112 ISYELPQGAQDPSVNVARVDRAGATFYLDVRADAMTRA-ELTDFLSREVNPQLASIEGVQ 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L  +   + ++       N                  +  
Sbjct: 171 KINLEGARNPAMRVWLDPVKLAAMNIGSNEVFTALQQNNVIAPLGKTENSAYEIDLLSNT 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +   + +                                   + +     +   
Sbjct: 231 TLKTAKDFENLSIKSF--------------------DGGSIHLGDVARVEEGEDRGITDG 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          S     +     +        + A         +          +   
Sbjct: 271 RVDLSQTIYIAVSPLPGANEIEIGDELYQRLEKINANLPHGANISIAYDGTLYMRDALKE 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV IV+ +++   +  LV   +I ++++ ++A++ ++G T+ L +I  IV
Sbjct: 331 IFTTLLETVILVGIVVLLLMGSLRSALVPLITIPISILGSIAMMQVMGFTMNLLTILAIV 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +GL VD  I+V E +    R  +S   +  +      + I    IT  +    + F  
Sbjct: 391 LSVGLVVDDAIVVVENVARHMRLGRSRIQAALISSRELLAPIVAMTITLALVYAPIGFVD 450

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
              G   + FA T+  ++LIS   A+++   M  +
Sbjct: 451 GITGALFKEFAFTLATAVLISGVVALTLSPIMSAY 485



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 76/195 (38%), Gaps = 10/195 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + LE +   +     +S   +  +      +E+    +  VI+  I +L+ +    
Sbjct: 295 DELYQRLEKINANLPHGANISIAYDGTLYMRDALKEIFTTLLETVILVGIVVLLLMG--- 351

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               AL  + T+ + I  ++    + G   NL  + A++  +G  V+D +VV + +    
Sbjct: 352 SLRSALVPLITIPISILGSIAMMQVMGFTMNLLTILAIVLSVGLVVDDAIVVVENV---A 408

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
           +      S       S  E L   V  ++   +   P+       G++   FA  +A  +
Sbjct: 409 RHMRLGRSRIQAALISSRELLAPIVAMTITLALVYAPIGFVDGITGALFKEFAFTLATAV 468

Query: 806 VVAASSSIFIAAPIL 820
           +++   ++   +PI+
Sbjct: 469 LISGVVAL-TLSPIM 482



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 63/175 (36%), Gaps = 13/175 (7%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAV-- 723
               I  + I+   + + + ++F  +      +  L        G  +   +      +  
Sbjct: 840  NSMISVLGIAIFVVYLVLSVQFNSFRSPF--VVLLGSVPLALSGALSFTFLGLTSMNIYA 897

Query: 724  -AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
                +TL+G    + +++ +   +   L     S  D I ++    L   + T+ A  + 
Sbjct: 898  QIGFITLVGLIAKNGILITEFANE---LQQEGKSKLDAIIEAAKVRLRPILMTTAATVLG 954

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD-WRAKNARI 833
              P+ +    G     S  I +  G+V+    ++F+   + L I + +  K  ++
Sbjct: 955  HFPLVLVTGAGAESRNSIGIILVAGMVIGTVFTLFVLPTVYLLIGEDYAKKTNKL 1009


>gi|325672613|ref|ZP_08152309.1| protein-export membrane protein SecD [Rhodococcus equi ATCC 33707]
 gi|325556490|gb|EGD26156.1| protein-export membrane protein SecD [Rhodococcus equi ATCC 33707]
          Length = 551

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 112/535 (20%), Positives = 200/535 (37%), Gaps = 32/535 (5%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD--- 64
             L      +  L AL            P         LG+DL+GG+ + L     D   
Sbjct: 2   RALAVFTALVAALYAL--VFFTGDKSPTPE--------LGIDLQGGTRVTLTARTPDGST 51

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA---DKVTLFLQG 121
                L+     + + +   G+    +    + + ++                  L+++ 
Sbjct: 52  PSQDSLRQAQQIIETRVNGLGVSGSEVVIDGDNLVITVP-GDDSSQARSLGQTARLYIRP 110

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS---------HAIEQSMEIIRQRID 172
           V                T+   +   +                     E +         
Sbjct: 111 VVGSQAAAAPGAQPAPATQAPTTPAPAPTEPAATPDVQERPFPAQDPTEPAEPSPSPAPA 170

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
                        +   + +    +            A +      P             
Sbjct: 171 PAPGEPVPGSPEAAAAEIAKAKETRQSEDPAVQQQAMATLDCSAPDPLQ-GNDDPNLPLV 229

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
              +DG    +     I G  ++ A++ ++ +  +  V +SF   G+  + + T  NIGK
Sbjct: 230 ACSTDGTTVYLLAPSIIDGQEISDASSGYNTQQSRYEVSLSFKSSGSSTWAQFTAANIGK 289

Query: 293 PLAVVLDGRVLTAPVINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             A  LD +V++APV+  A P      I+G F    A  LA  L+ GSLP+     E   
Sbjct: 290 QAAFTLDSKVVSAPVVQGATPAGSSTSITGQFNQTQAQELANTLKYGSLPLSFQASEAET 349

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL--- 408
           V A LG  S+  G  A   GLVL++++ +V Y   G++   S+ L+ ++  A++ LL   
Sbjct: 350 VSATLGLASLEAGLIAGAVGLVLVLVYCLVYYRMLGVLTALSLVLSGLMVYAVMVLLGRY 409

Query: 409 -GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            G TL L  IAG+++GIG+  DS ++  ERI++E R+ +S   ++  G++RA  TI   N
Sbjct: 410 IGFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWARARRTILSGN 469

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             + IA  VL+    G VRGFA T+GL+ ++ +     +   ++    + +    
Sbjct: 470 AVSFIAAAVLYVLAVGQVRGFAFTLGLTTILDVVVVFLVTWPLVYMASKSRFWSK 524



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 73/242 (30%), Gaps = 8/242 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             + +           +                   G              K   +    
Sbjct: 283 TAANIGKQAAFTLDSKVVSAPVVQGATPAGSSTSITGQFNQTQAQELANTLKYGSLPLSF 342

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                E V   +    +  G++   +  + +L+Y  + ++    L A  +L+L       
Sbjct: 343 QASEAETVSATLGLASLEAGLIAGAVGLVLVLVYCLVYYRMLGVLTA-LSLVLSGLMVYA 401

Query: 710 FFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L G       +L  +A ++  IG + +  VV ++R++  M+      SFR  + +  
Sbjct: 402 VMVLLGRYIGFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMRE---GRSFRSAVPRGW 458

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  +  +  +FI+   + V     +  FA  +    ++       +  P++     
Sbjct: 459 ARARRTILSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTILDVVVVFLVTWPLVYMASK 518

Query: 826 WR 827
            R
Sbjct: 519 SR 520


>gi|171741666|ref|ZP_02917473.1| hypothetical protein BIFDEN_00752 [Bifidobacterium dentium ATCC
           27678]
 gi|283455022|ref|YP_003359586.1| membrane transport protein [Bifidobacterium dentium Bd1]
 gi|171277280|gb|EDT44941.1| hypothetical protein BIFDEN_00752 [Bifidobacterium dentium ATCC
           27678]
 gi|283101656|gb|ADB08762.1| putative membrane transport protein [Bifidobacterium dentium Bd1]
          Length = 936

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/522 (13%), Positives = 173/522 (33%), Gaps = 70/522 (13%)

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGL 426
               LIVL M+       ++  F+  + V + +A +  + +  T+ S A    +++G+ +
Sbjct: 187 LAFALIVLLMMFGSLVAAVLPLFTAVVGVGVGVATIYTMTSWFTISSTAPMLAVMIGLAV 246

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
            +D  + +  R R++      V  S+    + A S +  + +T +IA + LF  G   + 
Sbjct: 247 GIDYALFLISRHRDQLSDGLEVEESIARSVATAGSAVIFAGLTVIIALLGLFVAGIPFLT 306

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
              +     +L+++  A ++V A++ F  +    +       SR  L         +   
Sbjct: 307 TMGVAAAFGVLVAVTVAETLVPALLGFAGKRLIPRKRANVKTSRRSLTNRKSHDHRIART 366

Query: 547 FWGVGISILFSICSICLLFTHG--------------------------------LNYGID 574
           +  +  +   ++  +  +                                     ++G  
Sbjct: 367 WVRLVTAKPLAVVVVITVALSALALPAANLRLALPDNSVEEVGTPARDAYDAVAEHFGPG 426

Query: 575 FKGGIQLGVLANRPVD-------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
           F G + L     +  D       ++     L  ++   ++  N  G+   +  +      
Sbjct: 427 FNGPLILTADIIQSTDPIGLVNRIADDIRRLPGVKAVPLATPNPKGDTGIIQIVPETGPS 486

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV------IISAIAML 681
             A  +++  ++ K    +     +        ++ ++  K    +      ++    +L
Sbjct: 487 DAATEQLVRELRGKYQYFLDTYDTETAVTGITAVAIDVSSKLGAALLPFGLLVVGLSLIL 546

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALF---------------GIEFNLTAVAAV 726
           + +  R  W   L A    +L +    G                    G   +   +  +
Sbjct: 547 LAMVFRSIWV-PLKATAGYLLSVLAAFGVTTWVFQLGHGAELIRVQRVGPVISFLPIILM 605

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
             L G +++ +V +  R+R+    Y      +  +++         V  +    +SV   
Sbjct: 606 GVLFGLAMDYEVFLVSRIRE---HYAHHGDAKAAVEEGFASA-STVVVAAATIMLSVFAA 661

Query: 787 AVW-GGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDW 826
            +  G + I   A  +A G+ V A    + +   +L  +   
Sbjct: 662 FIPEGSATIKPIAFSLAVGVFVDAFVVRLTLVPAVLALLGKR 703



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 61/168 (36%), Gaps = 15/168 (8%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLI-------LDITKTLGFFALFGIEFNLTAVA 724
            + ++   +++ +         + A+  L        + +       + F I      +A
Sbjct: 184 ALGLAFALIVLLMMF----GSLVAAVLPLFTAVVGVGVGVATIYTMTSWFTISSTAPMLA 239

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            ++ L    ++  + +  R R  +      +   + I +S+       ++  +   I++L
Sbjct: 240 VMIGL-AVGIDYALFLISRHRDQLSD---GLEVEESIARSVATAGSAVIFAGLTVIIALL 295

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + V G   + +  +  AFG++VA + +  +   +L F         R
Sbjct: 296 GLFVAGIPFLTTMGVAAAFGVLVAVTVAETLVPALLGFAGKRLIPRKR 343


>gi|239908199|ref|YP_002954940.1| multidrug resistance protein MdtC [Desulfovibrio magneticus RS-1]
 gi|239798065|dbj|BAH77054.1| multidrug resistance protein MdtC [Desulfovibrio magneticus RS-1]
          Length = 1043

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/496 (12%), Positives = 135/496 (27%), Gaps = 35/496 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                    P                     L   E + +   +    +     +     
Sbjct: 29  FRLLPAAALPQVDFPTI---------SVQAQLPGAEPETMATSVAAPLERQFGRIAGVTE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI-SI 145
              +  +   +I L F  SR     +  V   +     +L    ++N            +
Sbjct: 80  MTSTSGRGSVQINLQFDLSRDINGASRDVQAAIAAARGELPSTLRQNPTYRKMNPADAPV 139

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           ++       V   A+            ++   E   Q       L  +    DP++L Q 
Sbjct: 140 MVLALTSPMVSRSAM--YDVASTVLQQKLAQVEGVGQVFVGGGALPAVRVSVDPAKLAQQ 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             +   +                                     SG        N     
Sbjct: 198 GLSLESVRGLIAK--------------------TTVNKPKGRIESGDTAYEIDVNDQLHK 237

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                 +                 +   +  V    ++        I   +   +   T+
Sbjct: 238 AAEYEPLILSYKNGAAVRLSDVATVTDSVEDVRTAGLVGGTPAVMIIVFRQPGANIIETV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +    L   L A         VE         S +  + T A+   LV+ V+++ +   +
Sbjct: 298 DNVRALLPELVASLPGDVNVSVEMDRSPPIRASLAEVEFTLALSCLLVIAVVWVFLGSFR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             L+   +   +++ T A++ L   +L   S+  + +  G  VD  I+V E +       
Sbjct: 358 ATLIPAVATVASLVGTFAVMYLFDYSLDNLSLMALTIATGFVVDDAIVVVENVARYREAG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFT 502
                +  +G      T+   +++ +   + +FF GG      R FA  + ++IL+S+  
Sbjct: 418 MDPRQAAVVGSREVAFTVVSMSLSLVAVFIPIFFMGGMVGRLFREFAAVLSIAILLSLVL 477

Query: 503 AISIVRAMMIFIIRYK 518
           +++    +   +    
Sbjct: 478 SLTATPMLCAVVFGRG 493



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 88/247 (35%), Gaps = 14/247 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L       V LS V +  +S++    +          ++  +    + +     +  +  
Sbjct: 246 LSYKNGAAVRLSDVATVTDSVEDVRTAGLVGGTPAVMIIVFRQPGANIIETVDNVRALLP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITT 699
           ++   +P     + E+      R  + +    + +S + ++  +W+    +   L     
Sbjct: 306 ELVASLPGDVNVSVEMDRSPPIRASLAEVEFTLALSCLLVIAVVWVFLGSFRATLIPAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSIS 756
            +  +  T     LF    +  ++ A+    G+ V+D +VV +   R R+        + 
Sbjct: 366 TVASLVGTFAVMYLFDYSLDNLSLMALTIATGFVVDDAIVVVENVARYRE------AGMD 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            R        E     V  S++     +P+   GG V      FA  ++  I+++   S+
Sbjct: 420 PRQAAVVGSREVAFTVVSMSLSLVAVFIPIFFMGGMVGRLFREFAAVLSIAILLSLVLSL 479

Query: 814 FIAAPIL 820
             A P+L
Sbjct: 480 -TATPML 485



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 88/202 (43%), Gaps = 6/202 (2%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            ++  + + +    +   +TI+ T     +   + ++   + ++ + +A+ I + + ++  
Sbjct: 823  SQASDAIGQAAAGLGLPATIRTTFAGTAQALGDSLKNQPLLILAALVAVYIVLGVLYESA 882

Query: 692  F-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               +  ++TL       +     F ++ ++ AV  ++ LIG    + +++ D   +    
Sbjct: 883  IHPITILSTLPSAGLGGVAALMAFKLDLSIIAVIGIVLLIGIVKKNGIMMVDFALE--AE 940

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
               ++  R+ I ++        + T++AA +  LP+A     G  +     I +A G+VV
Sbjct: 941  RVRNLGPREAITEACRMRFRPIMMTTLAALLGALPLAFGHGAGFELRRPLGIVIAGGLVV 1000

Query: 808  AASSSIFIAAPILLFIYDWRAK 829
            +   ++F    I L++   R +
Sbjct: 1001 SQIMTLFTTPVIYLYLDRLRWR 1022


>gi|317122085|ref|YP_004102088.1| protein-export membrane protein SecD [Thermaerobacter marianensis
           DSM 12885]
 gi|315592065|gb|ADU51361.1| protein-export membrane protein SecD [Thermaerobacter marianensis
           DSM 12885]
          Length = 415

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 135/379 (35%), Positives = 219/379 (57%), Gaps = 25/379 (6%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +       + V    I+ ++EIIR R+D +G++E  IQR G  RI+++L G +DP   
Sbjct: 49  VVLQGVDKPGNPVTREKIDDAVEIIRNRVDALGVAEPVIQRQGEDRIVVELAGVKDPQAA 108

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            + +G TA++ F                      DG+  +  D++   GI +    A   
Sbjct: 109 IETIGRTARLEFR-------------------GPDGSVVVTGDQLVAGGIQVAADQAG-- 147

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +PVV + F+  G  +F E TR  +G P+++VLD +V+++P +N  I +G+A+I+G 
Sbjct: 148 ----RPVVQLQFNPQGTEKFAEATRKFLGSPISIVLDDQVISSPKVNDVITNGRAEITGI 203

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T E A  LA  LR G+LP+ L +VE R V A LG+DS+ +   A++ G   +  FM+V+
Sbjct: 204 PTFEEAQRLAVALRYGALPVDLQVVENRTVSATLGADSLQRSVEALIVGGAAVAAFMLVI 263

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G  A  ++ + ++LT   L  L ATLTLP IAG V+ +G+AVD+N+L+ ERI++E 
Sbjct: 264 YRIPGFWAVTALAVYMLLTAGALYGLNATLTLPGIAGFVMSVGMAVDANVLIYERIKDEL 323

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           +  +++  +LD GF  A+S I DSN+T LIA  VL+  G G VRGFA+T+ + ++ SMFT
Sbjct: 324 KAGKTIRAALDAGFRNAFSAILDSNLTTLIAAAVLYGLGTGPVRGFAVTLAVGVVASMFT 383

Query: 503 AISIVRAMMIFIIRYKKMK 521
           AI++ R  +  ++  +  +
Sbjct: 384 AITLTRFFLRNLVDAELFR 402



 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 77/193 (39%), Gaps = 4/193 (2%)

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
           +      V  +   +     +     V   +  + +++ +  +I+   A+  ++ + ++ 
Sbjct: 207 EEAQRLAVALRYGALPVDLQVVENRTVSATLGADSLQRSVEALIVGGAAVAAFMLVIYRI 266

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                A+T L + +  T G          L  +A  +  +G +V+  V++Y+R++  +K 
Sbjct: 267 P-GFWAVTALAVYMLLTAGALYGLNATLTLPGIAGFVMSVGMAVDANVLIYERIKDELKA 325

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                + R  +D          + +++   I+   +   G   +  FA+ +A G+V +  
Sbjct: 326 ---GKTIRAALDAGFRNAFSAILDSNLTTLIAAAVLYGLGTGPVRGFAVTLAVGVVASMF 382

Query: 811 SSIFIAAPILLFI 823
           ++I +    L  +
Sbjct: 383 TAITLTRFFLRNL 395



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 21/130 (16%), Positives = 49/130 (37%), Gaps = 10/130 (7%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLE-VDEDD--FVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
               ++RI+ GLDL GG  +VL+ VD+         +    + +R+ +   G+    +++
Sbjct: 30  DFKLQDRINRGLDLAGGVRVVLQGVDKPGNPVTREKIDDAVEIIRNRVDALGVAEPVIQR 89

Query: 94  IQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
              ++I +  A  +  +   + +    +            +  V  T  ++     Q   
Sbjct: 90  QGEDRIVVELAGVKDPQAAIETIGRTARLEFR------GPDGSVVVTGDQLVAGGIQVAA 143

Query: 153 DQVISHAIEQ 162
           DQ     ++ 
Sbjct: 144 DQAGRPVVQL 153


>gi|78047788|ref|YP_363963.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78036218|emb|CAJ23909.1| RND superfamily protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 1028

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 85/646 (13%), Positives = 186/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATADGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V      D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AVRDDFPEDLQRFHVFKWSSSDEPVLKVRLASQTDLTGAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S                         N 
Sbjct: 172 AKVEISGAPPNEVEIAIAPDRLTAHDLSLNDLSERL-------------------GKLNF 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +   +++ +G  +            +    +      A+         +      +  G
Sbjct: 213 SVSAGQIDDNGQRIRVQPIGELRDLQELRELVL----NAKGVRLGDIAEVRLKPTRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN-VGADLGSD 359
           R L            +   +     + A      +RA      + +    N   A   S 
Sbjct: 269 RRLDGRPAIGLDVYKERSANLVEVSKAALKEVEDIRAQPALRDVQVKVIDNHGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 AELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +        I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPDQPQLAALLGTRSVAIALSAGTFCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     + S            
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTSEHGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G D      +            +
Sbjct: 509 AKVLAWTLAHRGWSVTGIILVSAISLVPMKLTKVDMFGGDGGNEAFIQYQWKGSYTREQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +                G +   T     VK 
Sbjct: 569 GEEIGRVENYLQANRARYHITQIYSWFSEVEGSNTVVTFDASKVKD 614



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 85/237 (35%), Gaps = 11/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLSTIQNTE 655
            +L  +QI   + Q     +   + ++    + V        ++  +     P       +
Sbjct: 768  SLVEVQIRPAATQIGRTNRQTTLTIKANLAEKVTMPEARAAMEAPLKAMSFPAGYSYTFD 827

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E + + +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 828  GGDYQNDGEAMNQMVFNLVIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 887

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +     L    +     + +   E L   + 
Sbjct: 888  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN---NLRRRGMGRTQALVEGSRERLRPIMM 944

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T   A ++++P+          G      A  +A G+  +   S+     I   + D
Sbjct: 945  TMGTAILAMVPISLTSTTMFSDGPPYFPMARAIAGGLAFSTVVSLLFLPTIYAILDD 1001



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/204 (15%), Positives = 74/204 (36%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +    +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDIRAQPALRDVQVKVIDNHGKAVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S   F   I  +P      + I  F   +A  
Sbjct: 411 RERMPDQPQLA-----ALLGTRSVAIALSAGTFCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|77919312|ref|YP_357127.1| putative inner membrane component for iron transport [Pelobacter
           carbinolicus DSM 2380]
 gi|77545395|gb|ABA88957.1| putative inner membrane component for iron transport [Pelobacter
           carbinolicus DSM 2380]
          Length = 1074

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 90/670 (13%), Positives = 184/670 (27%), Gaps = 40/670 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N ++V L ++   +G L AL N    + LD  P       I                   
Sbjct: 12  NKFMVALLTVFLIVGGLYALKN----TPLDAIPDLSDVQVI---------VFTEYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          + K  +         + + + F D         +V  +L   +
Sbjct: 59  QVVEDQVTYPLTTQMLAVPKAKVVRGYSFFGYSFVYVIFEDGTDLYWARSRVLEYLNYAS 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            KL      +L    T        +  +         +           ++   E   + 
Sbjct: 119 GKLPRGVTPSLGPDATGVGWVYEYTLESDK---HDLQQLRSIQDWFLRYELTAVEGVSEV 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                 + Q     DP RL     T  ++       NN   G +  +            +
Sbjct: 176 ASIGGYVKQYQVAVDPDRLLAYHITIPQIKKAIQRSNNDVGGRLVEMAETEFMVRGPGYI 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +   ++                    V +  D  G              P        + 
Sbjct: 236 QSVADLEN------------------VVVGTDGRGTPILLRDLAQIRVGPELRRGLAELD 277

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   I   +   +   TIE        L+AG              G    +    K
Sbjct: 278 GRGETVGGIVVMRYGENALKTIENVKKKLEELQAGLPEGVHIKTAYDRSGLIERAVDTLK 337

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                 + +V +V  + + +    LVA F++ + +++   ++   G    + S+ GI + 
Sbjct: 338 EKLIEESIVVALVTALFLFHLPSALVAIFTLPVAILMAFVIMGGQGINANIMSLGGIAIA 397

Query: 424 IGLAVDSNILVNERIREENRK---NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
           IG  +D+ I++ E   +   +   ++S    +         T+F S +   ++ V +F  
Sbjct: 398 IGAMIDAAIIMIENAHKHIERAPADKSRAEVILESAKEVGPTLFYSLLVITVSFVPVFTL 457

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   +  A T   ++  +   +I+IV  +M + IR K               +   
Sbjct: 458 QEQSGRLFKPLAYTKTYAMAAAALLSITIVPVLMTWFIRGKIKSEESNPINRLLIRLYHP 517

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +    ++ R   + +++   +     L   G  +      G  L +    P         
Sbjct: 518 VVNLVLKWRKTTLVLALAAMLSIAWPLSQMGSEFMPPLYEGDLLYMPTTLPGISITKAKE 577

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L       I            V       D    + +   +  K  E      ++     
Sbjct: 578 LLQQTDRIIRQFPEVHHVFGKVGRAESATDPAPLSMIETTIMLKPEEQWRKVPVERFYSG 637

Query: 658 GPKISRELIR 667
            P  +  L +
Sbjct: 638 WPDWTEWLKK 647



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 52/343 (15%), Positives = 108/343 (31%), Gaps = 20/343 (5%)

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +      +     A+   R +   I   +  K+I  +       + +    +FM  R  G
Sbjct: 175 VASIGGYVKQYQVAVDPDRLLAYHITIPQIKKAIQRSNNDVGGRLVEMAETEFMV-RGPG 233

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
              S+      +          G D +G   L     +      +R  L  L     +  
Sbjct: 234 YIQSVADLENVVV---------GTDGRGTPILLRDLAQIRVGPELRRGLAELDGRGETVG 284

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                +     L+           +   + + +            E     +  +LI + 
Sbjct: 285 GIVVMRYGENALKTIENVKKKLEELQAGLPEGVHIKTAYDRSGLIERAVDTLKEKLIEES 344

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           I       +  L+     F    AL AI TL + I          GI  N+ ++  +   
Sbjct: 345 I-------VVALVTALFLFHLPSALVAIFTLPVAILMAFVIMGGQGINANIMSLGGIAIA 397

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  ++  +++ +   K+++      S  ++I +S  E      Y+ +   +S +P+   
Sbjct: 398 IGAMIDAAIIMIENAHKHIERAPADKSRAEVILESAKEVGPTLFYSLLVITVSFVPVFTL 457

Query: 790 ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G +    A    + +  AA  SI I   ++ +    + K
Sbjct: 458 QEQSGRLFKPLAYTKTYAMAAAALLSITIVPVLMTWFIRGKIK 500



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 68/241 (28%), Gaps = 10/241 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +  ++I                 +          T V +        I   S       
Sbjct: 819  QIADIRIRKGPPAIKSENARRTAWIYVDLKGIDVGTYVKQARAAVAENIELPSGYSLVWS 878

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI-TTLILDITKTLGFFALFG 715
               +   +   + ++ + ++ + + + +++  K     G +   +   +        L G
Sbjct: 879  GQYEYMEKAKERFMLVIPLTVLIIFLILYLNTKSLIKTGIVFLAVPFSLVGAFWLLYLLG 938

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVY------DRMRKNMKLYTTSISFRDLIDKSINETL 769
             + ++     V+ L G      VV+        ++  +     T       I     + +
Sbjct: 939  YDTSVAVWVGVIALAGLDAETGVVMLLYLDLAHKLWGDNGRMRTRGDLVQAIHHGAVKRI 998

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               V T       +LP+      G  V+   A PM  G+V +    + +   I       
Sbjct: 999  RPKVMTIAVIIAGLLPIMWSHGAGADVMKRIAAPMVGGVVTSGIMELMVYPVIYYLWRGR 1058

Query: 827  R 827
            +
Sbjct: 1059 K 1059


>gi|329315231|gb|AEB89644.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus T0131]
          Length = 805

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/592 (12%), Positives = 188/592 (31%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           IN+   +  A I+ + +  +    +       L    +    +
Sbjct: 78  KDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 137

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 138 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 197

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 198 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVVF 257

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++ +A++++ A++    +  K+  +  
Sbjct: 258 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFAVLSALTLLPALISIFHKRIKVNKLQS 317

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
                                                                       
Sbjct: 318 KFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 377

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 378 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 437

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 438 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 497

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 498 LFASVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 557

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 558 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 614

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 615 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 666



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 55  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTS 114

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 115 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 174

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 175 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 231

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       V+  +   I+V  +++ G   +       A  +V A
Sbjct: 232 QVMKTETDYIKGIGLAIGTAGSAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFA 291

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 292 VLSALTLLPALISIFHKRIKVNK 314


>gi|116251219|ref|YP_767057.1| RND family transporter [Rhizobium leguminosarum bv. viciae 3841]
 gi|115255867|emb|CAK06948.1| putative transmembrane RND family transporter [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1038

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/584 (11%), Positives = 162/584 (27%), Gaps = 40/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +   GL            +   P       I+            L   
Sbjct: 8   QRPVATTLLAIGVILAGLA-----GYQLVPVAALPQVDFPT-IN--------VSAQLSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +     +    +        S       I L F  SR  +  A  V   +  
Sbjct: 54  SPQTMATSVSTPLIKQFETIPGITEISASSSLGSTSIVLQFDLSRNIDAAAADVQAAISH 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  +         T      ++L     + +    ++   E I      +      
Sbjct: 114 ATRQLPDNLTTPPSYRKTNPADAPVMLLSVQSNTMPRSKLDDIAENI--ISPSLSTLPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  E DP++L         ++      N+ +                 
Sbjct: 172 AQVSVYGAQTYAVRVEVDPNKLLTRGIGIDTVNKALAAANSQQPVGTLQ----------- 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    +       TAN    + +    +                ++   +     G
Sbjct: 221 ---------NNSQSMTITANTQRTSAEQFRSLVIANPNGAPIHLGDIADVQDSVENQYTG 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    ++        L A   P    +V          + S
Sbjct: 272 SWYDGQRGIILAIQRQPDANTVDVVDAINAKLPQLHAEIPPSVNTVVMNDAAKPIRDAIS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +  GLV++V+++   +    ++   ++ L++I T  ++ +LG ++   S+ G+
Sbjct: 332 DVKFTLLLTIGLVVLVIYLFTGHATATIIPGLAVPLSLISTFGMMYVLGYSIDNISLLGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL VD  I++ E I     +   V  +   G      TI   +++ +   + +   
Sbjct: 392 TLAVGLVVDDAIVMLENILRHVEEGMPVREAAIKGAGEVSYTIISMSVSLIAVFIPILLM 451

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG   R    F + + ++I+ S   ++++   +   +  ++    + I      F     
Sbjct: 452 GGVVGRVFNEFGMVVAIAIISSAIVSLTVTPMLASRLSNHQSRPPLIIRIFDAGFERTLR 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              + +          +   + S+ L     +     F     +
Sbjct: 512 GYDRAVGWCLRHRPTILGVFLASVALTIYFFMTLPTSFFPQEDI 555



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 30/243 (12%), Positives = 87/243 (35%), Gaps = 12/243 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +     +  +     +    + L  Q         V++ +  K+ ++          
Sbjct: 257 DIADVQDSVENQYTGSWYDGQRGIILAIQRQPDANTVDVVDAINAKLPQLHAEIPPSVNT 316

Query: 656 IVGPKISRELIR-----KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +V    ++ +       K  + + I  + ++IY+         +     + L +  T G 
Sbjct: 317 VVMNDAAKPIRDAISDVKFTLLLTIGLVVLVIYL-FTGHATATIIPGLAVPLSLISTFGM 375

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G   +  ++  +   +G  V+D +V+ + +   ++     +  R+   K   E   
Sbjct: 376 MYVLGYSIDNISLLGLTLAVGLVVDDAIVMLENI---LRHVEEGMPVREAAIKGAGEVSY 432

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +  S++     +P+ + GG V      F + +A  I+ +A  S+ +   +   + + +
Sbjct: 433 TIISMSVSLIAVFIPILLMGGVVGRVFNEFGMVVAIAIISSAIVSLTVTPMLASRLSNHQ 492

Query: 828 AKN 830
           ++ 
Sbjct: 493 SRP 495



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 93/265 (35%), Gaps = 6/265 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                +    +       +         V  SN   ++            +     + +  
Sbjct: 749  IVEYDTSKPWDDQKLSEIRVASANGSLVPLSNFAHVERTVGPVTINQTGQLVSTTVSFNL 808

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + V+ +     + +  TE+   + +  +     +I  +        ++ + + + + + 
Sbjct: 809  PEGVSLSDATAAIDQIKTEMSMPADVFTSYGGTAQIFEQSQGNTPYLILAAVLTIYVVLG 868

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++ +   L  ++ L       L    + G + ++ A+  +L LIG    + +++ D  
Sbjct: 869  VLYESFIHPLTILSGLPAAAFGALLALKIMGFDLSIIALIGLLMLIGIVKKNAIMMIDVA 928

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPM 801
             + M+      +    I ++        + T+  A +  LP+A+  G    +     I +
Sbjct: 929  VETMRTTGEKATV--AIHEACVRRFRPIMMTTFCALLGALPIALGTGASSELRQPLGIAV 986

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW 826
              G++V+   ++FI   I + +  +
Sbjct: 987  VGGLIVSQMLTLFITPVIFVEMDRF 1011


>gi|253730229|ref|ZP_04864394.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253726038|gb|EES94767.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 829

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 74/592 (12%), Positives = 190/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  +  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKKGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 84.7 bits (207), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGIVQPNITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYIKGIGLAIGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKRIKVNK 338


>gi|300774660|ref|ZP_07084523.1| HAE1 efflux family protein [Chryseobacterium gleum ATCC 35910]
 gi|300506475|gb|EFK37610.1| HAE1 efflux family protein [Chryseobacterium gleum ATCC 35910]
          Length = 1052

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 69/650 (10%), Positives = 154/650 (23%), Gaps = 41/650 (6%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL-QMYSDELRSFLKK-EG 85
            Q  + RFP   P               + +        +  + +     L   +   E 
Sbjct: 28  NQLAVTRFPDISPPT-------------ITVSGSYPGGNSETVIRSVVTPLEEQINGVED 74

Query: 86  IGVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
           +         +    I++ F      +  A  V   +Q     L  +  +  L T+ ++ 
Sbjct: 75  MEYMKSTASNDGTFSISIIFKQGVNADQAAVNVQNRVQQATPILPQEVVRMGLTTSKQQN 134

Query: 143 ISIVLSQNNIDQV-ISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
             +++     +                  I Q+   +   Q +        +    +P +
Sbjct: 135 SMVLIFNIYTEDNKQYDETFLQNYANINLIPQVKRVKGVGQAMVFGIKDYSMRIWLNPQK 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           +       A +S      +        G                                
Sbjct: 195 MSSYGLEPADVSTAIADHSLESAPGKLGEES-----------------DAALEYVIRYKG 237

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +   +I     G++         +           +                 + 
Sbjct: 238 KKNRPEQYENIIVKNTGSQVIRLKDVARVEFGAISNTGDNLSNGKNAVTVAIMQTTGSNA 297

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
           N            L     P                +    K T      LV IV+F+ +
Sbjct: 298 NQIEIGVNQALDRLSKSFPPGIKYTKVMSTKERLDEATGQVKSTLIEAFILVFIVVFIFL 357

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              +  ++   ++ + +I T   L +LG T+ + ++  +VL IG+ VD  I+V E +   
Sbjct: 358 QDFRSTIIPAVAVPVAIIGTFFFLLVLGFTINVLTLFALVLAIGIVVDDAIVVVEAVHSN 417

Query: 442 NR-KNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
               + S   +     S    A  +I        I    +    G   + FA T+ ++I+
Sbjct: 418 MEGTDLSGREATHKAMSEITGAVISITLVMSAVFIPIGFMSGSAGLFYKQFAYTLAIAII 477

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           IS   A+++  A+    ++          P              F               
Sbjct: 478 ISAVNALTLTPALCAVFLKNNHAGE-GEKPQGFGQRFAVAFNAGFNNMTNRYAKGVRFLI 536

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                         G+                D       L       ++       K  
Sbjct: 537 GRKWIAGGLIVAVIGVAGWLMSSTPKSFVPMEDDGFFMYTLSMPPGTALTKTTEVSNKIN 596

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +                 ++         +  ++          +++  
Sbjct: 597 EILKGVDAVKENTSITGYNLLSNSAGPAYAMGFVKLKPKKERGEVQDIQE 646



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/256 (17%), Positives = 103/256 (40%), Gaps = 12/256 (4%)

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
              N  +   G   + +     V+   + +  ++L  G  +      +       Q + G
Sbjct: 244 QYENIIVKNTGSQVIRLKDVARVEFGAISNTGDNLSNGKNAVTVAIMQTTGSNANQIEIG 303

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            + A  R+ +     I     +ST +  +    ++   LI       I+  I + I++  
Sbjct: 304 VNQALDRLSKSFPPGIKYTKVMSTKERLDEATGQVKSTLIE----AFILVFIVVFIFLQ- 358

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +   +     + + I  T  F  + G   N+  + A++  IG  V+D +VV + +  
Sbjct: 359 --DFRSTIIPAVAVPVAIIGTFFFLLVLGFTINVLTLFALVLAIGIVVDDAIVVVEAVHS 416

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVI--GSFAIPMAF 803
           NM+   T +S R+   K+++E  G  +  ++      +P+  + G + +    FA  +A 
Sbjct: 417 NME--GTDLSGREATHKAMSEITGAVISITLVMSAVFIPIGFMSGSAGLFYKQFAYTLAI 474

Query: 804 GIVVAASSSIFIAAPI 819
            I+++A +++ +   +
Sbjct: 475 AIIISAVNALTLTPAL 490



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 53/143 (37%), Gaps = 8/143 (5%)

Query: 692  FALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            + L     L +          +   G++ N+     ++ LIG    + +++ +     ++
Sbjct: 894  YILPLAVMLSIPTGVVGALLGIKAIGLDNNIYVQVGLIMLIGLLAKNAILIVEFA---IQ 950

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIV 806
                 +S  D   +     L   + TS+A  + ++P+ +  G +     S +   A G++
Sbjct: 951  RRKAGLSILDSALEGAKARLRPIIMTSLAFIVGMVPLMLSSGGMASGNKSISTSAAMGML 1010

Query: 807  VAASSSIFIAAPILLFIYDWRAK 829
                  +F+   + +F      K
Sbjct: 1011 SGVVLGVFVIPVLYMFFQYLDEK 1033


>gi|330897576|gb|EGH28995.1| acriflavin resistance protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 927

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 52/511 (10%), Positives = 146/511 (28%), Gaps = 35/511 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +  +  FP       +             LE    +     +    ++  + L+      
Sbjct: 31  RLGIQDFPDTDLPAVV---------ISASLEGAAPEQRKTEVARKLEDKLTSLRLLKHVT 81

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             + +    I + F   +      ++V   +    ++L  +     +   T    +++  
Sbjct: 82  TKISEGSVLINVIFEIDKDGNEALNEVRNAVDSAAAELPANLDTPSVTRLTTNTTALLTY 141

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
             +  ++   A   S  +  +   Q+       +      +  ++  + DP+ +  L  +
Sbjct: 142 VVDAPRMDEEA--LSWFVDNELSKQLLTVRGVAKISRVGGVDREVQVDLDPTLMAGLGLS 199

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
              ++           G    +   + +      ++D   +  I +              
Sbjct: 200 VTDIANRLRAMQKDNSGGQGDLGSGQQALRVLGGIDDPAALGAIRIPV------------ 247

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                      R         +    A            +           S     +  
Sbjct: 248 --------SDGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSDVGVTKDL 299

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                        + +       V   + +             L ++V++  +   +  +
Sbjct: 300 RQAVNEFARQHPDVHIEEAS-NAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATI 358

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   ++ L++I T  ++   G +L   S+  + L IG+ VD  I+  E I    R  ++ 
Sbjct: 359 IVATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENIARHLRMGKTP 418

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAIS 505
             +           +  + +T +   +   F GG +    R F +T   +++ S+  A  
Sbjct: 419 RQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVARL 478

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +   M  ++++ +     D   + R+     
Sbjct: 479 LTPMMAAYLLKARPHGEHDSGLMRRYLGWIH 509



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 6/254 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I++ V   R + +  + +  ++    +               ++      V  T+ L 
Sbjct: 241 GAIRIPVSDGRMLAVQQLATVRDTHAERNTLAYRDGKPVIGFQVIRSLGFSDVGVTKDLR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +     P   I+        +         +      +A+L+  W    W   +  
Sbjct: 301 QAVNEFARQHPDVHIEEASNAVEPVMENYRGSMALLYEGMLLAVLVVWWFLRDWRATIIV 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            T L L I  T G     G   N  ++ A+  +IG  V+D +V  + +    +      +
Sbjct: 361 ATALPLSIIPTFGVMYFAGFSLNTVSLLALALVIGILVDDAIVEVENI---ARHLRMGKT 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI 813
            R    ++ +E     + T++      LP A  GG        F +  +  ++ +   + 
Sbjct: 418 PRQAAIEASDEIGLAVLATTVTLVAVFLPTAFMGGISGKLFRQFGVTASAALMFSLLVAR 477

Query: 814 FIAAPILLFIYDWR 827
            +   +  ++   R
Sbjct: 478 LLTPMMAAYLLKAR 491


>gi|220917882|ref|YP_002493186.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219955736|gb|ACL66120.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1045

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/464 (11%), Positives = 129/464 (27%), Gaps = 27/464 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                       V   +    ++  S +        S R+  + + + F  S        
Sbjct: 47  VTTTYPGASPSDVEETVTRPIEDAVSSIAGIDKVFSSSREDVSLVFIEFELSVPLGEAVQ 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +     +L +  +  ++         +++      Q    AI    ++  Q   +
Sbjct: 107 NVRDKVGVAQGELPLGARAPVIAQYDVAAQPVLVFSAASGQ---DAIALREKLDDQVRPR 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   E             ++  +    RLR +      +       +    G  F     
Sbjct: 164 LEQLEGVAAVRIVGGAEPEVSVDLSRDRLRAIGLDPEAVFRRVQGEHLDLPGGKFPA--- 220

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                     E  + + G   +       P                          + K 
Sbjct: 221 -------GDGEVGIRVRGEFQDVDALRHMP---------VAAAQDGSLMRLGDVALVRKG 264

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                                 +A  +          L   L+A        +       
Sbjct: 265 AKEPKTLVRTDGVDAVAVEVVKQAGANSAAVANEVKRLLPELQAELGFRAQVL--VDQSE 322

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +             + ++++ + +L  +  +++  ++  +V+ TL ++  +G +L 
Sbjct: 323 IIEANAHEVWVAIFFGGAMAVLIILLFLLDVRGTIISALALPTSVVGTLFVMYWMGFSLN 382

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++ G+ L IGL +D  ++V E I            +   G       +  +  T +  
Sbjct: 383 QLTLLGLSLAIGLLIDDAVVVRESITRRLEAGDPPAVAASRGTQEIALAVMATTFTLVAV 442

Query: 474 TVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            V + F     G   R F +T+ +++LIS+F A ++   +    
Sbjct: 443 FVPVAFMQGITGQFFRQFGLTITVAVLISLFVAFTLDPMLSARF 486



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 8/155 (5%)

Query: 670 IVGVIIS-AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            V +    A+A+LI +         + +   L   +  TL      G   N   +  +  
Sbjct: 332 WVAIFFGGAMAVLIILLFLLDVRGTIISALALPTSVVGTLFVMYWMGFSLNQLTLLGLSL 391

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG  ++D VVV + +    +             +   E     + T+       +P+A 
Sbjct: 392 AIGLLIDDAVVVRESI---TRRLEAGDPPAVAASRGTQEIALAVMATTFTLVAVFVPVAF 448

Query: 789 WG---GSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                G     F + +   ++++   + F   P+L
Sbjct: 449 MQGITGQFFRQFGLTITVAVLISLFVA-FTLDPML 482



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 83/256 (32%), Gaps = 11/256 (4%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +   G + G               PV L+ +     S     I  Q  +   +   ++
Sbjct: 749 IRVRLTGDDRGSRDALDGMWISTPRGPVALAQLARLERSTSPAVIEHQRRERSISVWAQI 808

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                   A   +   V  +             +    +          + ++I+ + + 
Sbjct: 809 APGHDLGGAVQALRARVGARPLPAGYGYIWDGMQKEQAESQA----NMGMALLIAVVFIF 864

Query: 682 IYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           I +  +F+ +      + +L L I   +    L G   N+ ++  ++ L+G    + +++
Sbjct: 865 IVLASQFESFIHPFTIMLSLPLAIVGAVLGLGLAGQTVNMGSLIGIILLMGLVTKNAILL 924

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
            D     ++           + +S    L   + TS A  + +LP A+    G       
Sbjct: 925 VD---GALQHLREGDDPETAVRRSGPRRLRPILMTSGAMILGMLPTALGKGMGSEFRAPM 981

Query: 798 AIPMAFGIVVAASSSI 813
           AI +  G++ +   ++
Sbjct: 982 AIAVIGGVITSTMLTL 997


>gi|190891016|ref|YP_001977558.1| multidrug efflux transporter protein [Rhizobium etli CIAT 652]
 gi|190696295|gb|ACE90380.1| probable multidrug efflux transporter protein [Rhizobium etli CIAT
           652]
          Length = 1038

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 67/584 (11%), Positives = 159/584 (27%), Gaps = 40/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +   GL            +   P       I+            L   
Sbjct: 8   QRPVATTLLAIGVILAGLA-----GYRLVPVAALPQVDFPT-IN--------VSAQLSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +     +    +        S       I L F  +R  +  A  V   +  
Sbjct: 54  SPQTMATSVATPLIKQFETIPGISEISASSSLGSTSIVLQFDLNRNIDAAAADVQAAISH 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  +         T      ++L     + +    +++  E I      +      
Sbjct: 114 ATRQLPDNLTTPPSYRKTNPADAPVMLLSVQSNTMPRSKLDEIAEDI--ISPSLSTLPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  E DP++L         ++      N+ +                 
Sbjct: 172 AQVSVFGAQTYAVRVEVDPNKLLTRGIGIDTVNKALSAANSQQPVGTMQ----------- 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    +       TAN      +    +                ++   +     G
Sbjct: 221 ---------NNAQSMTITANTQRTNAEQFRSLVIANPNGAPIHLSDVADVQDGVENQYTG 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    ++        L A        +V          + +
Sbjct: 272 SWYDGQRGIILAIQRQPDANTVDVVDAINAKLPQLHAEIPASVTTVVMNDAAKPIRAAIA 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +  GLV++V+++   +    ++   ++ L++I T  ++ +LG ++   S+ G+
Sbjct: 332 DVKFTLFLTIGLVVLVIYLFTGHATATIIPGLAVPLSLISTFGMMYVLGYSIDNISLLGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL VD  I++ E I     +   V  +   G      TI   +++ +   + +   
Sbjct: 392 TLAVGLVVDDAIVMLENILRHVEEGMPVREAAIKGAGEVSYTIISMSVSLIAVFIPILLM 451

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG   R    F + + ++I+ S   ++++   +   +        + I      F     
Sbjct: 452 GGVVGRVFNEFGMVVAIAIISSAIVSLTVTPMLGSRLSNNHSRPPLLIRIFDAGFERTLR 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              + +          +   + S+ L     +     F     +
Sbjct: 512 GYDRSVGWCLRHRVTILGVFLGSVALTVYFFMTLPTSFFPQEDI 555



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 93/270 (34%), Gaps = 12/270 (4%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           + +     T   N         +  V+AN       +    +     +  +     +   
Sbjct: 219 MQNNAQSMTITANTQRTNAEQFRSLVIANPNGAPIHLSDVADVQDGVENQYTGSWYDGQR 278

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVG 672
            + L  Q         V++ +  K+ ++        T +V    ++ +       K  + 
Sbjct: 279 GIILAIQRQPDANTVDVVDAINAKLPQLHAEIPASVTTVVMNDAAKPIRAAIADVKFTLF 338

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I  + ++IY+         +     + L +  T G   + G   +  ++  +   +G 
Sbjct: 339 LTIGLVVLVIYL-FTGHATATIIPGLAVPLSLISTFGMMYVLGYSIDNISLLGLTLAVGL 397

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +   ++     +  R+   K   E     +  S++     +P+ + GG 
Sbjct: 398 VVDDAIVMLENI---LRHVEEGMPVREAAIKGAGEVSYTIISMSVSLIAVFIPILLMGGV 454

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPI 819
           V      F + +A  I+ +A  S+ +   +
Sbjct: 455 VGRVFNEFGMVVAIAIISSAIVSLTVTPML 484



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 94/265 (35%), Gaps = 6/265 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                +    +       +         V  SN   +Q            +     + +  
Sbjct: 749  IVEYDTSKPWDDQKLAEIRVASSNGSLVPLSNFAHVQRTTGPVTINQTGQLVSTTVSFNL 808

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + V+ +     + +   EI   + +  +     +I ++        ++ + + + + + 
Sbjct: 809  PEGVSLSDATAAIDEIKKEISLPADVFTSYGGTAEIFQQSQGNTPYLILAAVLTIYVVLG 868

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++ +   L  ++ L       L    + G + ++ A+  +L LIG    + +++ D  
Sbjct: 869  VLYESFIHPLTILSGLPAAAFGALLALKIMGFDLSIIALIGLLMLIGIVKKNAIMMIDVA 928

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPM 801
             + M+  TT       I ++        + T+  A +  LP+A+  G    +     I +
Sbjct: 929  VETMR--TTGEKATAAIHEACVRRFRPIMMTTFCALLGALPIALGTGASSELRQPLGIAV 986

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW 826
              G+VV+   ++FI   I + +  +
Sbjct: 987  VGGLVVSQLLTLFITPVIFVEMDRF 1011


>gi|121605083|ref|YP_982412.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
 gi|120594052|gb|ABM37491.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
          Length = 1054

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/546 (12%), Positives = 165/546 (30%), Gaps = 37/546 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +        +     LL      L +  +D FP   P               + ++ +  
Sbjct: 8   SSLKFRFLVLAIAAMLLFFGTQQLRKMPVDVFPEFAPPK-------------VEIQTEGP 54

Query: 64  DFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 ++       ++    +        S     +++ L F       +   +V   L
Sbjct: 55  GMTATEVEELITIPMEDQMRGVPGVQYVRSSSVTGLSQVVLLFKMGSDLMDARQRVQERL 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           +   ++L       +++        ++    +    +   ++ SM        ++     
Sbjct: 115 KLAIAELPKSSGMPVILQPLSSTSRVMKIGLSSK--VHDQMDLSMIAYWTIKFRLMSVPG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                     +  L  + DPS +R    T  ++                 +  L  S G 
Sbjct: 173 VASIPMWGDQIKSLQVQVDPSLMRAHNVTLDEVMETTSDA--------LDIGMLTYSSGG 224

Query: 240 QYLVEDKVEISGIHLNGA-TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           +  ++  ++     L     +      H   V +S                +      ++
Sbjct: 225 KARIDGMIDTPNQRLAIHNESPVFSVEHLAQVPLSLKGRRPDPPRLGDVGKVVWDTWPLI 284

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              V+        I       +            A L+ G   ++++    R       S
Sbjct: 285 GDAVINDGHGLMMIVEKLPWANTLEVTRGVEEALAALKPGLPGVEIDSTIFRPATFIDLS 344

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                    I   LV+IVL   +   +  L++  +I L+++    +L  +GAT+    +A
Sbjct: 345 MQNLTRALIIGCLLVVIVLGAFLYEWRVALISVIAIPLSLVTAGLVLYQMGATINTMVLA 404

Query: 419 GIVLGIGLAVDSNILVNERIREENRK------NQSVFCSLDMGFSRAYSTIFDSNITALI 472
           G ++ +G  VD  I+  E I    R+       +S    +        S I  + +  ++
Sbjct: 405 GFIVALGDVVDDAIIDVENIVRRLRQHRLAGSGKSTARIILEASLEVRSAIVHATVIVVL 464

Query: 473 ATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           A   +FF GG +        +   +++L SM  A+++  A+ + ++    ++      + 
Sbjct: 465 AVTPVFFMGGLSGVFFEPLVLAYLVAMLASMVVALTVTPALSLLLLNRAGIEHRQSPLVP 524

Query: 530 RFFLIP 535
                 
Sbjct: 525 WLKRHY 530



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 89/250 (35%), Gaps = 7/250 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               P  L  V   +             DG    ++  +    +++  TR +E     + 
Sbjct: 263 RRPDPPRLGDVGKVVWDTWPLIGDAVINDGHGLMMIVEKLPWANTLEVTRGVEEALAALK 322

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLIL 702
             +P   I +T           ++     +II  + ++I +    ++W  AL ++  + L
Sbjct: 323 PGLPGVEIDSTIFRPATFIDLSMQNLTRALIIGCLLVVIVLGAFLYEWRVALISVIAIPL 382

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT---TSISFRD 759
            +          G   N   +A  +  +G  V+D ++  + + + ++ +    +  S   
Sbjct: 383 SLVTAGLVLYQMGATINTMVLAGFIVALGDVVDDAIIDVENIVRRLRQHRLAGSGKSTAR 442

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
           +I ++  E     V+ ++   ++V P+   G   G       +     ++ +   ++ + 
Sbjct: 443 IILEASLEVRSAIVHATVIVVLAVTPVFFMGGLSGVFFEPLVLAYLVAMLASMVVALTVT 502

Query: 817 APILLFIYDW 826
             + L + + 
Sbjct: 503 PALSLLLLNR 512



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 90/235 (38%), Gaps = 9/235 (3%)

Query: 594  VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            VR    +      +      E N      +          V   V+ ++++I        
Sbjct: 796  VRIAEVADVRIAATPNKIKRENNSRRIDVHANVKGRDLGAVANEVEARLSKISFPMGYYP 855

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +   K  +   R  +V  + + +A+ + +   F+  F L  +  L L         A 
Sbjct: 856  QLLGEYKERQSAQRNLLVASVFAVVAIFLILHATFR-NFRLAGMIFLALPAALVGAVLAT 914

Query: 714  FGIE--FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            F  +   +L ++  ++T++G S  + +++ +  R   +          L+ +  +E L  
Sbjct: 915  FAADRVISLGSLVGIITILGLSARNGIMLIEHCRYLQQEEGEPFGIG-LVLRGASERLSP 973

Query: 772  SVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             + T++   +++LP+ V G      +    A+ +  GI+ ++  S+F+  PIL  
Sbjct: 974  ILMTTLCTALALLPLIVPGSIPGHEIEHPMAVAILGGIITSSLLSLFVV-PILYL 1027


>gi|333027715|ref|ZP_08455779.1| putative integral membrane efflux protein [Streptomyces sp. Tu6071]
 gi|332747567|gb|EGJ78008.1| putative integral membrane efflux protein [Streptomyces sp. Tu6071]
          Length = 1046

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/518 (12%), Positives = 156/518 (30%), Gaps = 32/518 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R +     L  ++  + ++      +PQ      P+                  ++   +
Sbjct: 6   RFSLAQRALIGLMSIVAIVFGA-IAIPQLKQQLLPNIELPM-----------VSVIAPYQ 53

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D V   +    ++    +        +  +    +   F      + +   V   +
Sbjct: 54  GASPDVVEKQVVEPLEKSLDAVDGLSTTTSTASEGNAVVMAQFDFGSGTKQLVADVQQAV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               S+L  D    ++  +T+   ++VL+  +           S ++ R  + ++   + 
Sbjct: 114 NRARSQLPDDVDPQVVAGSTDDIPTVVLAATS----PRDQQALSDQLDRTVVPELKEIDG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q        +Q+    D ++L +   + A +         +     F           
Sbjct: 170 VSQVTIDGVRDLQVTITPDTAKLARAGLSAAALGDALKSGGVTMPAGSFDEG-------- 221

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
               E++    G          D +               +        ++ +  A    
Sbjct: 222 ---GENRTVQVGTPFTSLRQIEDLRVVGQAGQGGAQGEAPKPVRLGDVASVKQQEATATS 278

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                         +     S     +        LR          V          + 
Sbjct: 279 ITRTDGKPSLAVAVTMDKDGSAVGISKAVKDKLGDLRDSLGKGADLKVVVDQGPPVSKAI 338

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S      A+  G  ++V+ + +   +  LV   SI L+V+LTL +L     +L + ++  
Sbjct: 339 SGLTTEGALGLGFAVVVILVFLASIRSTLVTAVSIPLSVLLTLIVLWTRDLSLNMLTLGA 398

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + + IG  VD +I+V E I+      +    ++          +  S +T +   + +  
Sbjct: 399 LTIAIGRVVDDSIVVLENIKRHLGYGEERKEAILTAVKEVAGAVTASTLTTVAVFLPIGL 458

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G   G     F++T+  ++L S+  ++++V  +  + 
Sbjct: 459 VGGIVGELFSSFSLTVTTALLASLLVSLTVVPVLSYWF 496



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 71/177 (40%), Gaps = 9/177 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    L  ++  + +   L  + +      K    L  +G +G+  + + +L+++   
Sbjct: 304 SKAVKDKLGDLRDSLGKGADLKVVVDQGPPVSKAISGLTTEGALGLGFAVVVILVFLA-- 361

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    ++ L +  TL       +  N+  + A+   IG  V+D +VV + ++  
Sbjct: 362 -SIRSTLVTAVSIPLSVLLTLIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK-- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
            +        ++ I  ++ E  G    +++      LP+ + G   G +  SF++ +
Sbjct: 419 -RHLGYGEERKEAILTAVKEVAGAVTASTLTTVAVFLPIGLVGGIVGELFSSFSLTV 474



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 69/191 (36%), Gaps = 3/191 (1%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L ++++ D        +      +  +P      +   E+ KK     +P         
Sbjct: 788 DLATVRLVDGPVSMTRIDGARAATVTAKPVGDDTGSISTELTKKLDELKLPQGATTEIGG 847

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           V    +  L +  +  +   AI  L+ +         L  + ++    T  LG   + G 
Sbjct: 848 VTADQNDSLGKLALAMLAAVAIVFLLLVGTFRSLIQPLILLVSIPFAATGALGLLLVTGT 907

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              + A+  +L LIG  V + +V+ D + +            + + +     L   + T+
Sbjct: 908 PLGVPAMIGMLMLIGIVVTNAIVLIDLINQYR---DRGYGVIEAVTEGGRHRLRPILMTA 964

Query: 777 MAAFISVLPMA 787
           +A   +++PMA
Sbjct: 965 LATIFALIPMA 975


>gi|157827177|ref|YP_001496241.1| RND family efflux transporter [Rickettsia bellii OSU 85-389]
 gi|157802481|gb|ABV79204.1| RND family efflux transporter [Rickettsia bellii OSU 85-389]
          Length = 1052

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 64/517 (12%), Positives = 148/517 (28%), Gaps = 40/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +  + I   G+            +   P                   + L   
Sbjct: 9   KRPVLATLFMATILLFGIF-----GYRLLPVSVLPDIDFPTIQ---------VSVSLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   + +  ++  S +               +ITL F  SR  +  A  V   +  
Sbjct: 55  DPTTMASSVALPLEKQFSTISNIDSMSSVNSAGSTQITLQFDLSRDIDAAAQDVQAAISS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  D                I       D +  + ++   E I    +++ +    
Sbjct: 115 AAKQLPNDLPTPPSYRKVNPADAPIFYISLTSDTLPLYTVDYYAETI--MAERLSMLPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  + DP ++        ++S      N +        + +  S    
Sbjct: 173 AQVQVYGSQQYAVRVQVDPVKMAANNIGLDQVSSIISSSNVNLPTGALYGKDIYSSIQAP 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +                       +    I     G+  F +     I       +  
Sbjct: 233 GQL-------------------QNAKEYNDLILTYRNGSPLFLKNIGKAIDSVANNKIAA 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P I  A    +   +    ++    +  +LR          +      +   S +
Sbjct: 274 WYRDKPGIILA-IQKQPDTNTIEIVDGIKEVLPLLRRQIPEGVNINIMFDRSISIRESVN 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   LV++ +F+ +   +  ++   ++ L+++ T A + L G ++   S+  +
Sbjct: 333 DANFTMILALILVVLAIFLFLHNFRSVIIPTIALPLSIVGTFAFMYLFGFSIDNMSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G  VD  I+V E I       Q+   +   G      TI    ++     + + F 
Sbjct: 393 TLAMGFVVDDAIVVLENITRHIEAGQNKIQACINGTKEIGFTIVSMTLSLTAVFIPILFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               G  +   A+ +  +IL+S   +I++   +    
Sbjct: 453 SGILGKLLHELAVVITTAILLSGVISITVTPMLCNVF 489



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 94/257 (36%), Gaps = 8/257 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L      P+ L  +   ++S+    I+    D     L   +    +++     ++ V  
Sbjct: 246 LTYRNGSPLFLKNIGKAIDSVANNKIAAWYRDKPGIILAIQKQPDTNTIEIVDGIKEVLP 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITT 699
            +   +P     N         RE +      +I++ I +++ I      +   +     
Sbjct: 306 LLRRQIPEGVNINIMFDRSISIRESVNDANFTMILALILVVLAIFLFLHNFRSVIIPTIA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I  T  F  LFG   +  ++ A+   +G+ V+D +VV + +    +      +   
Sbjct: 366 LPLSIVGTFAFMYLFGFSIDNMSLMALTLAMGFVVDDAIVVLENI---TRHIEAGQNKIQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
                  E     V  +++     +P+       G ++   A+ +   I+++   SI + 
Sbjct: 423 ACINGTKEIGFTIVSMTLSLTAVFIPILFMSGILGKLLHELAVVITTAILLSGVISITV- 481

Query: 817 APILLFIYDWRAKNARI 833
            P+L  ++    K++ +
Sbjct: 482 TPMLCNVFLKDEKHSTV 498



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 72/165 (43%), Gaps = 8/165 (4%)

Query: 671  VGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +G+++    ++IYI    +   +   +  ++ L   +   L    +F  E ++     ++
Sbjct: 882  LGLLLGLAVIVIYIILGMLYESFVHPVTILSGLPTAVFGALLTLLIFNSELDMYGFVGLI 941

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG    + +++ D   +  +      S +D I ++        + T++AA +  +P+A
Sbjct: 942  MLIGIVKKNAIMIIDFALELERTSNK--SSKDAILEACTIRFRPIMMTTLAALMGAMPIA 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +     G+   S  + +  G++ +   +++I   I L++   + K
Sbjct: 1000 LGIGSTGAERRSLGLAVVGGLLTSQLLTLYITPIIFLYLEAGKRK 1044


>gi|148268984|ref|YP_001247927.1| MMPL domain-containing protein [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150395063|ref|YP_001317738.1| MMPL domain-containing protein [Staphylococcus aureus subsp. aureus
           JH1]
 gi|257794333|ref|ZP_05643312.1| MMPL domain-containing protein [Staphylococcus aureus A9781]
 gi|258407319|ref|ZP_05680463.1| MMPL domain-containing protein [Staphylococcus aureus A9763]
 gi|258419995|ref|ZP_05682952.1| MMPL domain-containing protein [Staphylococcus aureus A9719]
 gi|258445478|ref|ZP_05693667.1| MMPL domain-containing protein [Staphylococcus aureus A6300]
 gi|258449037|ref|ZP_05697145.1| MMPL domain-containing protein [Staphylococcus aureus A6224]
 gi|258453689|ref|ZP_05701666.1| MMPL domain-containing protein [Staphylococcus aureus A5937]
 gi|282927046|ref|ZP_06334671.1| MmpL domain-containing protein [Staphylococcus aureus A10102]
 gi|295405245|ref|ZP_06815058.1| MmpL domain-containing protein [Staphylococcus aureus A8819]
 gi|297244303|ref|ZP_06928193.1| MmpL domain-containing protein [Staphylococcus aureus A8796]
 gi|147742053|gb|ABQ50351.1| MMPL domain protein [Staphylococcus aureus subsp. aureus JH9]
 gi|149947515|gb|ABR53451.1| MMPL domain protein [Staphylococcus aureus subsp. aureus JH1]
 gi|257788305|gb|EEV26645.1| MMPL domain-containing protein [Staphylococcus aureus A9781]
 gi|257841105|gb|EEV65555.1| MMPL domain-containing protein [Staphylococcus aureus A9763]
 gi|257843954|gb|EEV68346.1| MMPL domain-containing protein [Staphylococcus aureus A9719]
 gi|257855738|gb|EEV78664.1| MMPL domain-containing protein [Staphylococcus aureus A6300]
 gi|257857724|gb|EEV80617.1| MMPL domain-containing protein [Staphylococcus aureus A6224]
 gi|257864165|gb|EEV86916.1| MMPL domain-containing protein [Staphylococcus aureus A5937]
 gi|282591093|gb|EFB96167.1| MmpL domain-containing protein [Staphylococcus aureus A10102]
 gi|285818212|gb|ADC38699.1| Putative antibiotic transport-associated protein [Staphylococcus
           aureus 04-02981]
 gi|294970190|gb|EFG46208.1| MmpL domain-containing protein [Staphylococcus aureus A8819]
 gi|297179081|gb|EFH38326.1| MmpL domain-containing protein [Staphylococcus aureus A8796]
 gi|312830891|emb|CBX35733.1| MMPL family protein [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130799|gb|EFT86784.1| MMPL domain protein [Staphylococcus aureus subsp. aureus CGS03]
 gi|329723741|gb|EGG60270.1| MMPL family protein [Staphylococcus aureus subsp. aureus 21172]
          Length = 829

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/592 (12%), Positives = 190/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVVF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 83/256 (32%), Gaps = 14/256 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +P     ++  LE ++  D                + +       T  +     K     
Sbjct: 86  QPNIAEDIKKTLEDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRD 145

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGV-------IISAIAMLIYIWIRFKWYFALG-AIT 698
            + +          +  EL   G+          ++  I   + + I F    A G  I 
Sbjct: 146 NVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPII 205

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNMKLYTTSI 755
           + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   ++  T  
Sbjct: 206 SALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR---QVMKTET 262

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            +   I  +I       V+  +   I+V  +++ G   +       A  ++ A  S++ +
Sbjct: 263 DYIKGIGLAIGTAGSAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTL 322

Query: 816 AAPILLFIYDWRAKNA 831
              ++   +     N 
Sbjct: 323 LPALISIFHKRIKVNK 338


>gi|15925542|ref|NP_373076.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15928131|ref|NP_375664.1| hypothetical protein SA2339 [Staphylococcus aureus subsp. aureus
           N315]
 gi|156980867|ref|YP_001443126.1| hypothetical protein SAHV_2536 [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|253316064|ref|ZP_04839277.1| hypothetical protein SauraC_07947 [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
 gi|255007324|ref|ZP_05145925.2| hypothetical protein SauraM_12665 [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|258428345|ref|ZP_05688169.1| antibiotic ABC transporter [Staphylococcus aureus A9299]
 gi|258443020|ref|ZP_05691508.1| antibiotic ABC transporter [Staphylococcus aureus A8115]
 gi|269204185|ref|YP_003283454.1| MmpL efflux pump, putative [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282894942|ref|ZP_06303166.1| hypothetical protein SGAG_02286 [Staphylococcus aureus A8117]
 gi|296276523|ref|ZP_06859030.1| MmpL efflux pump, putative [Staphylococcus aureus subsp. aureus
           MR1]
 gi|13702502|dbj|BAB43643.1| SA2339 [Staphylococcus aureus subsp. aureus N315]
 gi|14248326|dbj|BAB58714.1| similar to antibiotic transport-associated protein homolog ydfJ
           [Staphylococcus aureus subsp. aureus Mu50]
 gi|156723002|dbj|BAF79419.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3]
 gi|257849809|gb|EEV73772.1| antibiotic ABC transporter [Staphylococcus aureus A9299]
 gi|257851626|gb|EEV75561.1| antibiotic ABC transporter [Staphylococcus aureus A8115]
 gi|262076475|gb|ACY12448.1| MmpL efflux pump, putative [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282762738|gb|EFC02874.1| hypothetical protein SGAG_02286 [Staphylococcus aureus A8117]
          Length = 829

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 75/592 (12%), Positives = 190/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVVF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGIVQPNITEDIKKTLEDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       V+  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYIKGIGLAIGTAGSAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKRIKVNK 338


>gi|253700679|ref|YP_003021868.1| heavy metal efflux pump, CzcA family [Geobacter sp. M21]
 gi|251775529|gb|ACT18110.1| heavy metal efflux pump, CzcA family [Geobacter sp. M21]
          Length = 1045

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 77/605 (12%), Positives = 171/605 (28%), Gaps = 46/605 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +++++++I   G+         ++ +D  P       I                 
Sbjct: 11  RNRVIILMMFALIIAWGVWSV-----YKTPVDAIPDLSDNQVI---------VFTDYPGR 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          L +      S     + I + F D         +V   L  
Sbjct: 57  SPQVVEDQVTYPLAVNLQGLPQVRAVRASSAFGFSMIYVIFEDKADIYWARTRVLERLNY 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       L    T        +       +          +R    Q+       
Sbjct: 117 AASLLPPGVVPTLGPDGTGVGHVFWYTLEGKGYDLEQLRTLQDWFVRY---QLNTVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + +   + DP+RL       ++++      NN   G +            + 
Sbjct: 174 EVASIGGFVREYQVDLDPNRLFAYNIKVSQVADAIKKSNNDVGGRLLEQADAEFLIRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   ++  I +                       G   + +                 
Sbjct: 234 YVKSTTDLENIVVGADM------------------RGTPIYVKNLGTVQLGGAIRRGMLD 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I   +   +    I+        L  G  P    +V          +   
Sbjct: 276 MNGEGEAVGGIVVMRYGENAKDVIDRVKEKIVSLEKGLPPGVKIMVSYDRSDLIERAIHT 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K +    + +V +V+ + +L+ +  LV   ++ + V+ +   + L+G +  + S+ GI 
Sbjct: 336 LKASLIEESIVVSLVILVFLLHFQSALVIVLTLPIAVLFSFITMKLMGVSSNIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVF------CSLDMGFSRAYSTIFDSNITALIATV 475
           + IG+ VD+ +++ E       +             +     +    IF S    +++ V
Sbjct: 396 IAIGVLVDAGVIMVENCYRHLSEMPPEERKEKRLEVIITSAKQVGRAIFFSLAIIILSFV 455

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSR 530
            +F      G      A T   S++ S F AI++V  +M F++R K        ++    
Sbjct: 456 PVFLLEGQEGKMFHPLAFTKTFSMMGSAFIAITLVPVLMYFLMRGKMPPESANPVSTFFI 515

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
               P    +   +     + ++ L     + +         +D    + + V       
Sbjct: 516 KMYSPVIRWVLKWKKTTIALNVAALLIAIPMFMSIGSEFMPPLDEGSLLYMPVTLPNVSI 575

Query: 591 LSVVR 595
               R
Sbjct: 576 NEAKR 580



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 88/287 (30%), Gaps = 11/287 (3%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                +       G  Y         + V A+       V++       G I     D  
Sbjct: 218 RLLEQADAEFLIRGRGYVKSTTDLENIVVGADMRGTPIYVKNLGTVQLGGAIRRGMLDMN 277

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                             + +    K+    +        +I+      +LI + I  + 
Sbjct: 278 GEGEAVGGIVVMRYGENAKDVIDRVKEKIVSLEKGLPPGVKIMVSYDRSDLIERAIHTLK 337

Query: 675 ISAI-----AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            S I       L+ +     +  AL  + TL + +  +     L G+  N+ ++  +   
Sbjct: 338 ASLIEESIVVSLVILVFLLHFQSALVIVLTLPIAVLFSFITMKLMGVSSNIMSLGGIAIA 397

Query: 730 IGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           IG  V+  V++ +   R    M          ++I  S  +      ++     +S +P+
Sbjct: 398 IGVLVDAGVIMVENCYRHLSEMPPEERKEKRLEVIITSAKQVGRAIFFSLAIIILSFVPV 457

Query: 787 AVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +  G    +    A    F ++ +A  +I +   ++ F+   +   
Sbjct: 458 FLLEGQEGKMFHPLAFTKTFSMMGSAFIAITLVPVLMYFLMRGKMPP 504



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 90/282 (31%), Gaps = 12/282 (4%)

Query: 563  LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                              +  +    +D + V  +L +           + E   L  + 
Sbjct: 758  RFPIRLRYMREMRSDIPSIQRILVSGMDGAQVPLSLVTKLKVSTGAPEINSEGGLLRSIV 817

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
            +           +   K  + +               +   ++  K  + +++ A  ++I
Sbjct: 818  FLNVRGRDMGGFVNEAKTVLEKQ-MKLPPGYYVAWSGQWENQVRAKARLQMLVPAGILII 876

Query: 683  YIWIRFKWYFAL-GAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVV 739
            +I + F ++ A+  ++  L +      G + +   G   ++      + L G +V   VV
Sbjct: 877  FILLYFTFHSAIEASMVMLSVPFALVGGVYLVKMLGYNMSVAVWVGFIALYGIAVETGVV 936

Query: 740  VYDRMRKNMKLYT-----TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            +   + + +         T     D   +     L   + T   A + ++P+      G 
Sbjct: 937  MVIYLHEALDKKLINGPCTEQDIYDATFEGAVLRLRPKLMTVAVALLGLVPIMWSTGTGA 996

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             V+   A PM  G++ +A   + +   I + +     K  ++
Sbjct: 997  DVMKPIAAPMIGGMISSAVHVLIMTPVIFVLMKKHDLKKGKL 1038


>gi|254497811|ref|ZP_05110579.1| cation efflux system protein cusA [Legionella drancourtii LLAP12]
 gi|254352988|gb|EET11755.1| cation efflux system protein cusA [Legionella drancourtii LLAP12]
          Length = 1055

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/605 (11%), Positives = 166/605 (27%), Gaps = 40/605 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV++ +++   G + +L     ++ +D  P       I                  
Sbjct: 11  KNRFLVVIMTLLVTAGGIYSLF----KTPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + I + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLATAMLAVPGAVTVRAYSYFGDSYIYIIFKDGTDLYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       L    T                     E +         ++       +
Sbjct: 118 AGQLPPGATPQLGPDATGVGWVYQY-ALVDKTGKHDLSELTTLQNWLLKFELQTVPGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     +P ++R      AK+    +  N+   G +  +            
Sbjct: 177 VATVGGMVKQYQVILEPDKIRAYDLPLAKVKHAIMNANSEIGGSVIEMGEAEYMIRTDGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++    +                    + +  +E G              P      G +
Sbjct: 237 IQSIRALKN------------------IPLGLNEHGTPILLSNVARITLGPEMRRGIGEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   TIE        L+         +           +    
Sbjct: 279 NGQGEAVGGIIVMRQGENALTTIEAVKKKLESLQQSLPKGVKIVETYNRSSLIHRAIETL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        +V++V F+ + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 QSKLVEETIVVILVCFLFLFHMRSSLVVVISLPIGILCAFIIMYFQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD+ I++ E + +   K    +++ +  +          +F S +   ++ + +F
Sbjct: 399 AIGAMVDATIVMIENVHKHIEKTPLTDENRWQVIREASLEVGPPLFFSLLIITLSFLPVF 458

Query: 479 ---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   +I++V  +M + IR K +               
Sbjct: 459 ALQAQEGRLFAPLAYTKTYAMAAAAGLSITLVPVLMGYFIRGKILAEKKNPINRFLIASY 518

Query: 536 DCIAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             +    ++A +   +   I+  I                 +G           V +   
Sbjct: 519 KPVIHLVLKAPKIILLLTLIVVIISYWPFARLGSEFMPELDEGDWMYMPTTLPGVSIGKA 578

Query: 595 RSNLE 599
           R  L+
Sbjct: 579 RQILQ 583



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 69/207 (33%), Gaps = 8/207 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +R  +  L     +       +     L            + + + K +  +   +   
Sbjct: 270 EMRRGIGELNGQGEAVGGIIVMRQGENALTTIEAVKKKLESLQQSLPKGVKIVETYNRSS 329

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
                   +  +L+ + IV +++            F    +L  + +L + I        
Sbjct: 330 LIHRAIETLQSKLVEETIVVILVCF-------LFLFHMRSSLVVVISLPIGILCAFIIMY 382

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGR 771
             GI  N+ ++  +   IG  V+  +V+ + + K+++    +   R  +I ++  E    
Sbjct: 383 FQGINANIMSLGGIAIAIGAMVDATIVMIENVHKHIEKTPLTDENRWQVIREASLEVGPP 442

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFA 798
             ++ +   +S LP+          FA
Sbjct: 443 LFFSLLIITLSFLPVFALQAQEGRLFA 469



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/152 (19%), Positives = 61/152 (40%), Gaps = 15/152 (9%)

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAA--VLTLIGYSVNDKVVVY----DRMRKNM 748
              +  L L +  T G + L+ + +NL+       + L G +V   VV+       +++ +
Sbjct: 890  VLVILLTLPLALTGGVWLLYLLNYNLSVAVGVGFIALAGVAVEIGVVMLVYLNHALKETL 949

Query: 749  KLYTTSISF------RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAI 799
            + +    S       ++ + K     +   + T  A    +LP+ + GG    V+   A 
Sbjct: 950  EEHKKKQSPLTQDSIKEAVIKGALLRIRPIIMTVSAIIGGLLPIMITGGTGSEVMRRIAA 1009

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            PM  G+V A   ++ +   + L     + KN 
Sbjct: 1010 PMIGGMVSATLLTLIVIPAVFLLWKKRKFKNN 1041


>gi|254491145|ref|ZP_05104326.1| RND transporter, HAE1/HME family, permease protein [Methylophaga
           thiooxidans DMS010]
 gi|224463658|gb|EEF79926.1| RND transporter, HAE1/HME family, permease protein [Methylophaga
           thiooxydans DMS010]
          Length = 1047

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 92/684 (13%), Positives = 189/684 (27%), Gaps = 47/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV-LEV 60
           +N   L ++  +I  +G+  A      +  +   P           LD+R  S +     
Sbjct: 7   KNGKLLTVIVLIIVVLGIAAA-----QRIPVQMIPD----------LDVRTISVVTGWPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   + +  +     +        +    Q  I + F           +VT  L 
Sbjct: 52  ATPQDVEKEILIEQERYLRSVPNMTRMESTADTGQANIEMEFPFGVDINETLIEVTNALS 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ---SMEIIRQRIDQIGIS 177
            V+S    +  +  + +++  E + +       Q     ++    +  I      ++   
Sbjct: 112 QVSSY-PENVDQPTIRSSSFSENAFMYFAVATQQGNPLNLDMDMVTDFIDDDVRPRMERV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +         Q+    DP++L Q   +   +       N             R   
Sbjct: 171 RGVSEVQLRGGAERQVQITIDPAKLAQRGLSLTDVRDAIRERNRDTSAGDLDDGKRRYFI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +D   ++ + L               V +   E+                    
Sbjct: 231 RTTGRFKDIESLNELTLAHRNNTDIKLKDVAEVKLDHYEVRHLAIVNDEAAL-------- 282

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +        + +          +                +   +V     
Sbjct: 283 ----------MMAVKRESGSNVINIKRDMLKVVEEIRQEQLEPNGMTIKLIGDDVRYVQA 332

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S        A+ A L  +VLF+ +  G+  L+    + +  I     L +   T+ + S+
Sbjct: 333 SVEKVASNLALGAILATLVLFLFLRSGRATLIGLMGMPICTIAAFIGLLVFDRTINVISL 392

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AGI   IG+ VD+ I+V E I +  R+      +   G    +S +  S++T ++    +
Sbjct: 393 AGIAFAIGMTVDNTIVVLESIEQARRRGLDRIQAAITGVRDVWSAVLASSMTTVLVFAPV 452

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G      AI +  +IL SM  A+++V A    +    +    D        L 
Sbjct: 453 LFVQEEAGQLYSDIAIAISTAILASMLFALAVVPAACARVGFGDERDHGDDLAHPGPILR 512

Query: 535 PDCIAIQFMRARF--WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG----VLANRP 588
                      RF    +  S         +     L  G + K    +        +  
Sbjct: 513 TVSWLNGSAIKRFLCIVLIFSGTMIAGWYLMPPAEYLPEGEEPKAFSVMTAPPGYNLSEM 572

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             L     +   L +     +  +GE        Y       +  VL    +       +
Sbjct: 573 EKLGDEIRDHLRLALNADPSKYDNGEHQIPSLKYYFQRIMPGRVWVLSEPTRDQDIEPMM 632

Query: 649 STIQNTEIVGPKISRELIRKGIVG 672
             + +     P +     R  I+ 
Sbjct: 633 QALTDLYKQYPGMRGFSHRGSIIA 656



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 105/294 (35%), Gaps = 24/294 (8%)

Query: 560  SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
             + +  T G N  +     + +       + LS +    +++    +   +        V
Sbjct: 754  DMFIFSTAGQNQTLSDMSDLPIMTPQGTVLPLSALAEIRDTVDSDQLRRVDGRRTVTLSV 813

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VIISAI 678
                +     A  RV   +   +     +    +  I G     +  R+ +   ++I+ I
Sbjct: 814  IPPREIALETAVNRVRTQMLPDMQAAGEVDKGVSISISGAADQLDATRESLSSNMVIAVI 873

Query: 679  AMLIYIWIRFK-WYFALGAITTLIL----------------DITKTLGFFALFGIEFNLT 721
             + + +   F  W + L  +TT+ L                 +    G  A+    F++ 
Sbjct: 874  LIYLLLVAIFSHWGYPLLILTTVPLGIAGGIVGLVAVNSSGALLNAFGLPAIIQ-PFDMI 932

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
             +   + L+G  VN+ +++ ++ RKN++      S R  +++++   L   + ++     
Sbjct: 933  TMLGFVILLGTVVNNPILIVEQTRKNLQEA--GTSVRLAVNRAVATRLRPILMSTATTVF 990

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             + P+      G  +     I +  GI+ +   ++     +L+ +  W  K  +
Sbjct: 991  GLAPLVFIPGAGTELYRGVGIVVLVGILCSMIVTLAFLPSLLISVLSWNEKRKK 1044



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 84/281 (29%), Gaps = 11/281 (3%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R      S           F        D +   +L +      D+ +       L   +
Sbjct: 210 RERNRDTSAGDLDDGKRRYFIRTTGRFKDIESLNELTLAHRNNTDIKLKDVAEVKLDHYE 269

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           +       ++  L+    +   S       +M+K                I         
Sbjct: 270 VRHLAIVNDEAALMMAVKRESGSNVINIKRDMLKVVEEIRQEQLEPNGMTIKLIGDDVRY 329

Query: 666 IRKGI--VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA---LFGIEFNL 720
           ++  +  V   ++  A+L  + +          +  L+     T+  F    +F    N+
Sbjct: 330 VQASVEKVASNLALGAILATLVLFLFLRSGRATLIGLMGMPICTIAAFIGLLVFDRTINV 389

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            ++A +   IG +V++ +VV + +    +     +         + +     + +SM   
Sbjct: 390 ISLAGIAFAIGMTVDNTIVVLESI---EQARRRGLDRIQAAITGVRDVWSAVLASSMTTV 446

Query: 781 ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +   P+       G +    AI ++  I+ +   ++ +   
Sbjct: 447 LVFAPVLFVQEEAGQLYSDIAIAISTAILASMLFALAVVPA 487


>gi|294626514|ref|ZP_06705113.1| acriflavin resistance protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599204|gb|EFF43342.1| acriflavin resistance protein [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 1049

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/547 (11%), Positives = 144/547 (26%), Gaps = 41/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVAALPNIQIPIIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + L F  SR  ++ A  +   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSLVVLVFQSSRNIDSAAQDIQTAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      +     A E           ++       
Sbjct: 115 SQSDLPSGLGTPMYSKANPNDDPVIAIALTSE--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  T   +       N +             +  +  
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTPDDLRNAVRAANVTSPTGFLSDGNTTMAIISND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVSKAAD-------------------FAQLAISTQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR+   P                S   
Sbjct: 274 WFDGKPAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHG 333

Query: 362 YKG---TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                 T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+ 
Sbjct: 334 VHEVQATLMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLL 393

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +V+ IG  VD  I+V E +     +  S   +   G      TI     + +   + + 
Sbjct: 394 ALVIAIGFVVDDAIVVIENVMRHLDEGMSRLDAALAGAREIGFTIVSITASLVAVFIPML 453

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F  G      R F +T+  +I++SM  ++++  A+    +             +    + 
Sbjct: 454 FASGMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSPHAEPEKPGRFGAWLDRMH 513

Query: 536 DCIAIQF 542
           + +   +
Sbjct: 514 ERMLRVY 520



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 341 LMISLAMVILTMALFLRRLAPTLIAAVTVPLSLAGSALVMYVLGFTLNNLSLLALVIAIG 400

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           + V+D +VV + +   M+     +S  D       E +G ++ +  A+ ++V    ++  
Sbjct: 401 FVVDDAIVVIENV---MRHLDEGMSRLDAALAGARE-IGFTIVSITASLVAVFIPMLFAS 456

Query: 792 SVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
            +I      F + +   IVV+   S+ +   +
Sbjct: 457 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPAL 488


>gi|15639401|ref|NP_218850.1| preprotein translocase subunit SecD [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025643|ref|YP_001933415.1| preprotein translocase subunit SecD [Treponema pallidum subsp.
           pallidum SS14]
 gi|6094265|sp|O83425|SECD_TREPA RecName: Full=Protein-export membrane protein secD
 gi|3322694|gb|AAC65398.1| protein-export membrane protein (secD) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018218|gb|ACD70836.1| protein-export membrane protein [Treponema pallidum subsp. pallidum
           SS14]
 gi|291059800|gb|ADD72535.1| protein-export membrane protein SecD [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 583

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 36/166 (21%), Positives = 86/166 (51%), Gaps = 4/166 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           +N ++VG  +  E IR+G   ++    A+L+++ + ++    + A    +L++    G  
Sbjct: 398 ENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLVWYQ-EAGVNACVAQLLNLYIMFGVL 456

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           + F +   L+++A ++  IG +V+  VVV++R+R+ + L  +  +    +          
Sbjct: 457 SAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSRGA---AVCSGFERAFWA 513

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            + +++  FI+ L ++V G   I  FA  +A G+V +  +++F++ 
Sbjct: 514 IMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSR 559



 Score =  117 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 89/500 (17%), Positives = 174/500 (34%), Gaps = 74/500 (14%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVN------------GFLQMYSDELRSFLKKEGIGVF 89
             + LGLDL GG+ +V++ D  +                 + +    L + + + G+   
Sbjct: 141 QAVKLGLDLSGGTSVVIKADLSEVTKGVPDAERAAIRSEAMALVLSTLENRINRFGLSEP 200

Query: 90  SMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            +R+   +++ +       ++ +   V          ++ D  + LL             
Sbjct: 201 VIRRQGEDRVYVEIPGLTDRDRVHSIVMGRGVLAFHLVDDDATQKLLDHYRNN------- 253

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                Q    A  Q  ++    + +        ++      +                  
Sbjct: 254 ----PQGTFDAAHQLHDLS--LVPEHTSVLGVYRKDSYGLDVRDG--------------- 292

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
                F  V    + +G       +     N+ LV   ++  G  +       +      
Sbjct: 293 -----FLVVKKEPALEGRHIRDATVSSGRANEPLVLFDLDHEGARIFSELTTKEIGRRLA 347

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           +V              +T  +                        SG +           
Sbjct: 348 IVSDGKIRSAPAIREPITAGSGS---------------------ISGFSAEEAQNLKTAL 386

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                 +       ++            G+ ++  G CA++  +++        Y + G+
Sbjct: 387 RSAWLNVALEIENQQVVGASMGEESIRQGTRALVWGLCAVLLFMLV-------WYQEAGV 439

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
            A  +  LN+ +   +LS    TLTL SIAG++L IG+AVD+N++V ERIREE    +S 
Sbjct: 440 NACVAQLLNLYIMFGVLSAFNLTLTLSSIAGMILTIGMAVDANVVVFERIREELALGKSR 499

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             ++  GF RA+  I DSN+T  IA + L   G G ++GFA ++ + ++ S+FTA+ + R
Sbjct: 500 GAAVCSGFERAFWAIMDSNVTTFIAALFLSVLGTGPIKGFAYSLAIGVVSSVFTALFVSR 559

Query: 509 AMMIFIIRYKKMKSIDINPL 528
            M  +       K++ I   
Sbjct: 560 LMFDYGTEVLHKKTVRIGWR 579


>gi|303248524|ref|ZP_07334781.1| acriflavin resistance protein [Desulfovibrio fructosovorans JJ]
 gi|302490054|gb|EFL49975.1| acriflavin resistance protein [Desulfovibrio fructosovorans JJ]
          Length = 1032

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 62/515 (12%), Positives = 141/515 (27%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   +   G +        Q  +   P                    +     
Sbjct: 10  RPVATTLIMVAVILAGAVA-----YFQLPVSALPQVDYPTIQ---------VRTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        +     + ITL FA S   +    +V   +   
Sbjct: 56  PDVMASAVTAPLERQFGQMPGLTQMTSASSSGASIITLQFALSLSLDVAEQEVQASINTA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  D     + +      + +LS   +        E       +   +I        
Sbjct: 116 STLLPDDLPSPPVYSKVNPADAPILS-LALTSDSLPLTEVQDLADTRLAQKISQLSGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +P+ L     T   +       N ++    F   +     G    
Sbjct: 175 VSVAGGQRPAVRIAANPTALAAYGITLEAVRTAVAAANVNQAKGGFDGPYQSSILGANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                       +       R         +      V     
Sbjct: 235 LLTSKD--------------------YRPLIVSYKNGRPVRLSDVATVTDGAEDVRQAAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +    ++    +   LRA                    S    
Sbjct: 275 VNGKPAIVLNIQRQPGANVIAVVDRVKAILPSLRASLPASVDLATMADRTVTIRASIEDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV+ V+F+ +   +  L+   ++ L+++ T  ++ LLG  L   ++  + +
Sbjct: 335 QLELLLAVVLVVGVIFVFLRDARATLIPAVAVPLSLVGTFGVMYLLGYGLNNLTLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I++ E +        S   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 STGFVVDDAIVMIENVARHVEDGASPMRAALDGAGQIGFTILSLTVSLVAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA+T+G++IL S   ++++   M   +
Sbjct: 455 VVGRLFREFAVTLGVTILFSAVVSLTLTPMMCGRM 489



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 47/135 (34%), Gaps = 6/135 (4%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     + L +  T G   L G   N   + A+    G+ V+D +V+ + + 
Sbjct: 352 FLRDARATLIPAVAVPLSLVGTFGVMYLLGYGLNNLTLMALTISTGFVVDDAIVMIENV- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +      S          +     +  +++    ++P+   G   G +   FA+ + 
Sbjct: 411 --ARHVEDGASPMRAALDGAGQIGFTILSLTVSLVAVLIPLLFMGDVVGRLFREFAVTLG 468

Query: 803 FGIVVAASSSIFIAA 817
             I+ +A  S+ +  
Sbjct: 469 VTILFSAVVSLTLTP 483


>gi|74317764|ref|YP_315504.1| heavy metal efflux pump CzcA [Thiobacillus denitrificans ATCC
           25259]
 gi|74057259|gb|AAZ97699.1| heavy metal efflux pump CzcA [Thiobacillus denitrificans ATCC
           25259]
          Length = 1034

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 80/609 (13%), Positives = 185/609 (30%), Gaps = 49/609 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   ++V    ++   G+L      L Q  +D FP                   L+ E 
Sbjct: 10  LRQRLFVVAASLLLLVYGMLT-----LKQLPVDVFPDLNKPT-----------VTLMTEA 53

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           +    + V   +    +   + +              + + + F           ++   
Sbjct: 54  EGMAPEEVEQLISFPVETAMNGIPGVTRVRSVSGIGLSIVYVEFDWGTDIYRNRQQIAER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L  V  +L       +   ++     I+L     D   ++ ++           ++    
Sbjct: 114 LSLVKEQLPAGVTPQMGPISSIMG-EIMLIAMTADPTRANPMQVRELADWVVRPRLLTIP 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q +     + Q     DP  L +L  T  ++         +  G     +       
Sbjct: 173 GVSQVIPIGGEVKQYRVTPDPVALDRLGVTLEQIERAMANFATNTSGGFLESQAQEYLIR 232

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           N        ++ G+ +                       G     E              
Sbjct: 233 NIGRTTRLEDLKGLVI-------------------DYRGGIPVVLEQVARVDFAARLKRG 273

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           D   +  P +  ++       +   T E    L  + +     I    +  +       S
Sbjct: 274 DASFMGKPAVILSVQKQPGADTVKLTREIEAALGELNKNMPAGIAAKDILFKQANFIESS 333

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            S  +      A +V +VLF+ +L  +   ++  +I +++++T+ +    G ++   ++ 
Sbjct: 334 VSNVEEALRDGAIMVAVVLFLFLLNFRTTFISLTAIPISILITVLVFKYFGLSINTMTLG 393

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALI 472
           G+ + IG  VD  ++  E +    ++N+       V   +        S I  + +  ++
Sbjct: 394 GLAIAIGELVDDAVVGVENVFRRLKQNRAEGDRIPVLDVIAAATLEVRSAIVYATLIIVL 453

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             V LF      G       +   +SIL SM  ++++   +  +++   K      +P+ 
Sbjct: 454 VFVPLFVLSGIEGRLFAPLGVAYIVSILASMLVSVTLTPVLCYYLLPKMKRLEHADSPVV 513

Query: 530 RFFLIPDCI--AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 D       F  A+F   G  +  ++ +  + F          +G + + V+ N 
Sbjct: 514 AKLKHWDTGLLRWSFDHAKFVLGGGLLAVALAAAAVPFFPRSFLPAFNEGTLTISVVMNP 573

Query: 588 PVDLSVVRS 596
              LS    
Sbjct: 574 GTSLSEANR 582



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/264 (18%), Positives = 98/264 (37%), Gaps = 14/264 (5%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           ID++GGI + +     VD +      ++  +G  +      ++     ++       A  
Sbjct: 248 IDYRGGIPVVLEQVARVDFAARLKRGDASFMGKPAVILSVQKQPGADTVKLTREIEAALG 307

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            + + +   I     L    N          E +R G + V +     L+     F+  F
Sbjct: 308 ELNKNMPAGIAAKDILFKQANFIESSVSNVEEALRDGAIMVAVVLFLFLL----NFRTTF 363

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNM 748
              ++T + + I  T+  F  FG+  N   +  +   IG  V+D VV    V+ R+++N 
Sbjct: 364 --ISLTAIPISILITVLVFKYFGLSINTMTLGGLAIAIGELVDDAVVGVENVFRRLKQNR 421

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGI 805
                 I   D+I  +  E     VY ++   +  +P+ V  G     FA   +     I
Sbjct: 422 AEGDR-IPVLDVIAAATLEVRSAIVYATLIIVLVFVPLFVLSGIEGRLFAPLGVAYIVSI 480

Query: 806 VVAASSSIFIAAPILLFIYDWRAK 829
           + +   S+ +   +  ++     +
Sbjct: 481 LASMLVSVTLTPVLCYYLLPKMKR 504



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 78/238 (32%), Gaps = 7/238 (2%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            +  +   D   Q         + L      +     V ++  +     +        E  
Sbjct: 789  IAEIDDSDGPNQILRENSRRRMVLMANSDGTDMAQIVRDIRAELARYPLQEGYFTQLEGQ 848

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFFALFGI 716
                         + + +S   + + ++ R+K       I   I L +  ++    + G 
Sbjct: 849  FQAQEEASRLITGLSL-VSLAMIFLVLYSRYKSAVLSLMIMGNIPLALVGSVIALWMSGG 907

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              ++ ++   +TL G S  + ++       N+  +      R +I +   E L   + T+
Sbjct: 908  ALSVASLVGFITLAGISTRNGILKISHYI-NLVAHEGENFDRKMIIRGSLERLTPVLMTA 966

Query: 777  MAAFISVLPMAVWGGSV----IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            + A  +++P+ + GG      +   A+ +  G+V +      +   +     +   + 
Sbjct: 967  LVAAFALIPLLLSGGDPGKEILHPVAVVIFGGLVSSTLLDTILTPVMFYLWGEKPTRK 1024


>gi|300718169|ref|YP_003742972.1| multidrug resistance protein [Erwinia billingiae Eb661]
 gi|299064005|emb|CAX61125.1| Multidrug resistance protein [Erwinia billingiae Eb661]
          Length = 1029

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 68/595 (11%), Positives = 159/595 (26%), Gaps = 42/595 (7%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90
            +   P       +             L     + +   +    +     +        S
Sbjct: 33  PVAPLPQVDFPTIM---------VTAKLAGASPETMAATVATPLERSLGQIAGITEMTSS 83

Query: 91  MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
                + I L F  SR     A  V   +    S L                 + ++   
Sbjct: 84  SSAGSSNIILQFDLSRDINGAARDVQAAINAARSLLPSSMASLPTYRKANPSDAPIVM-L 142

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
            +        E       +   +I   +           L  +  +  P  L     +  
Sbjct: 143 ALTSTTRTNGELYDIADSKIDQKIAQVQGVGDVSLMGSALPAVRIDLQPQMLTHFGVSMD 202

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            +         +    M           +   ++   E                      
Sbjct: 203 TVREAIANSTTNLPKGMLQGEHQSWVVDSNGQLDKASE--------------------YR 242

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
            +       R         +   +    +              + +A  +   TI+    
Sbjct: 243 KLVVSYQDGRAIHLSDVATVYDSVEDKYNVGYYNQTPSVMIGVTRQAGANMLETIDAIKA 302

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
               L           +          S    + T  I   LV+ V+F+ +   +  L+ 
Sbjct: 303 QLPALEKDLPADVALKIVVDRSPNVRASLYDTEETLLIAVLLVIGVVFVFLRNVQAVLIP 362

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ +++I T A++ +LG +L   S+  +++  G  VD  I+V E I     +  S   
Sbjct: 363 ALALPVSLIGTCAVMYMLGYSLDNLSLMALIIATGFVVDDAIVVLENITRYIEEGMSPVR 422

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIV 507
           +   G      T+    ++ +   + +   G   G   R FA+T+ +S++ISM  ++S+ 
Sbjct: 423 ASLKGAHEVSFTVLSMTLSLVAVFIPILLMGSIVGRLFREFAVTLTVSLIISMLVSLSLT 482

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA---------IQFMRARFWGVGISILFSI 558
             +   +++ +   +   +P+ ++                       R     + +   +
Sbjct: 483 PMLCSRLLKRRPAVTRRPHPVYQWIENGLNRLLAAYSSALDWVMHHQRLTLFSLILTVLL 542

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                       +     G +   + A++ V    ++  L+            DG
Sbjct: 543 NLFLYSVVQKGFFPNQDTGLLMGMLRADQNVSYQAMKPKLQQFAKMIEQDPAVDG 597



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 82/252 (32%), Gaps = 7/252 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMV 638
            +     R + LS V +  +S++               +   +    +       +   +
Sbjct: 245 VVSYQDGRAIHLSDVATVYDSVEDKYNVGYYNQTPSVMIGVTRQAGANMLETIDAIKAQL 304

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
                ++     ++      P +   L       +I   + + +           L    
Sbjct: 305 PALEKDLPADVALKIVVDRSPNVRASLYDTEETLLIAVLLVIGVVFVFLRNVQAVLIPAL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L + +  T     + G   +  ++ A++   G+ V+D +VV + +    +     +S  
Sbjct: 365 ALPVSLIGTCAVMYMLGYSLDNLSLMALIIATGFVVDDAIVVLENI---TRYIEEGMSPV 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
               K  +E     +  +++     +P+ + G   G +   FA+ +   ++++   S+ +
Sbjct: 422 RASLKGAHEVSFTVLSMTLSLVAVFIPILLMGSIVGRLFREFAVTLTVSLIISMLVSLSL 481

Query: 816 AAPILLFIYDWR 827
              +   +   R
Sbjct: 482 TPMLCSRLLKRR 493



 Score = 45.1 bits (104), Expect = 0.048,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 91/245 (37%), Gaps = 7/245 (2%)

Query: 591  LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              V  S   S    +         ++    + +   D V+  +   ++K  + +I    +
Sbjct: 780  AQVPISAFASFSGANAPLSVAHQGQSATSTIAFNLADGVSLEQASALIKTAMAQIALPDS 839

Query: 651  IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            IQ       K   +L       ++ +  A+ I + + ++ Y     I + +      +G 
Sbjct: 840  IQAGFQGTAKAFADLSASMPWLILAALAAVYIVLGMLYESYIHPLTILSTLPSAG--VGA 897

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L G +  + A+  +L LIG    + +++ D            +S +  I ++      
Sbjct: 898  LLLTGTQLTVIALIGILLLIGIVKKNAIMMID--FALAAERKQGLSPQQAITQACLMRFR 955

Query: 771  RSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T++AAF   LP+A+  G    +     + +A G+ ++   ++F    + L++    
Sbjct: 956  PIMMTTLAAFFGALPLALGSGGDADLRSPLGLAIAGGLALSQLLTLFTTPVVYLYLDRAS 1015

Query: 828  AKNAR 832
                R
Sbjct: 1016 RATKR 1020


>gi|221217476|ref|ZP_03588947.1| acriflavine resistance protein [Borrelia burgdorferi 72a]
 gi|221192754|gb|EEE18970.1| acriflavine resistance protein [Borrelia burgdorferi 72a]
          Length = 1071

 Score =  136 bits (342), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 165/514 (32%), Gaps = 33/514 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K          +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSVSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKMPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVMNEIEKLKLSMPKDMKLEIASDSTDFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+     +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFCLMYFANISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G   + F  T+ +S+ +S+  AI +V  +
Sbjct: 462 ELGVYGDFFKDFTFTIVISLGVSLLVAIFLVPVL 495



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ + +  + +   +   +   + L          T+V   V   I   VP       +
Sbjct: 799  SSIATFEKTNKAESIYRENQALTIYLNAGISPDDNLTQVTAKVVDFINNKVPHKEGITLK 858

Query: 656  IVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            + G       I     + ++++ I +   +  +F+ +      I T+ L     +    L
Sbjct: 859  VEGEYNEFSNIMNQFKIIIMMAVIVVFGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFL 918

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++ A   +L L+G  VN  +V+ D       L       R+ I +S    L   +
Sbjct: 919  AGEKLSIFAAIGMLMLVGVVVNTGIVLVD---YTGLLIKRGFGLREAIIESCRSRLRPIL 975

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +S+ + I ++PMA     G  ++   A     G+  +   ++F    +     +
Sbjct: 976  MSSLTSIIGLIPMAFSSGSGNELLKPIAFTFIGGMTASTFLTLFFIPMLFEIFSN 1030



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 75/262 (28%), Gaps = 17/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +             V+ +           V+  ++
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS-----VQKRSDANSIAVSNVVMNEIE 312

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           K    +     ++        I   +          + +A+ +  +    +   +    +
Sbjct: 313 KLKLSMPKDMKLEIASDSTDFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGIS 372

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        I  N+ ++A +   IG  V+  +VV D +    K          
Sbjct: 373 IPIAIVLTFCLMYFANISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLIS 429

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSI 813
                  E +     ++  +     P  ++       G     F   +   + V+   +I
Sbjct: 430 SSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFTFTIVISLGVSLLVAI 489

Query: 814 FIAAPI---LLFIYDWRAKNAR 832
           F+   +    + +Y    KN +
Sbjct: 490 FLVPVLSSHYVGLYTSFQKNIK 511


>gi|284039343|ref|YP_003389273.1| acriflavin resistance protein [Spirosoma linguale DSM 74]
 gi|283818636|gb|ADB40474.1| acriflavin resistance protein [Spirosoma linguale DSM 74]
          Length = 1049

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 59/553 (10%), Positives = 160/553 (28%), Gaps = 40/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +V+ ++++  +G++               P                         
Sbjct: 9   KRPTLVVVAFTVLGLLGIIS-----YKSLNYTLLPKFDAAVVT---------VITTYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S L+       + ++  + I +  + S             +  
Sbjct: 55  AAGEVENSVTRKLEDAVSSLENLKNISSTSQEGLSVIQIELSASADPNQALQDAQRKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   L   +  ++ ++       +    A +    +  Q   Q+   +   
Sbjct: 115 VLSQLPDEVESPTLQKFSTDDVPVIRMGV---RANLEATKLYDLVDDQIRTQLTKVDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   +     ++    DP++L+    + A+++                      +  N  
Sbjct: 172 QVTLTGGREREIRISVDPNKLKLYNLSLAQVTQAV-------------------NSANLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               ++E          A      ++             +        +   ++      
Sbjct: 213 YPTGRIETDQAQYAIRLAGKFTDINQIRNAALLTSTNGTQVTLQDVATVTDGVSDATTIN 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +            +   +     +    IL ++ +  +       V   +    L S  
Sbjct: 273 RINGRESIGISIQKQTDANAVAISQQVRGILGSIEKKYANIGLKFEVTSDSSTYTLASAE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      LV +V+ + +   +   +   S+  ++I     + LLG TL L ++  +
Sbjct: 333 GVIFDLEFAVVLVALVMLLFLHSIRNAFIVMVSVPASIISVFVPMYLLGFTLNLMTLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVL 477
            L +G+ VD +I+V E I       +    +   G +    T   I   ++   +  V +
Sbjct: 393 SLVVGILVDDSIVVLENIYRHLEMGKDRRTASLDGRNEIGFTALAITMVDVVVFLPLVFV 452

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
                  +R F++ +  S L+S+  + +I   +     +   +           +     
Sbjct: 453 QGLIANIIREFSLVVVFSTLMSLVVSFTITPLLASRFAKETDLSGRSPGKRFLAWFERQF 512

Query: 538 IAIQFMRARFWGV 550
            +++   AR    
Sbjct: 513 DSLKHGYARLLVW 525



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 16/150 (10%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                  A   + ++   I        L G   NL  + A+  ++G  V+D +VV + + 
Sbjct: 352 FLHSIRNAFIVMVSVPASIISVFVPMYLLGFTLNLMTLMALSLVVGILVDDSIVVLENI- 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIGSFAI 799
              +        R       NE             + V+             ++I  F++
Sbjct: 411 --YRHLEMGKDRRTASLDGRNEIG---FTALAITMVDVVVFLPLVFVQGLIANIIREFSL 465

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                +V +   S+ ++  I   +    AK
Sbjct: 466 V----VVFSTLMSLVVSFTITPLLASRFAK 491



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 56/142 (39%), Gaps = 7/142 (4%)

Query: 671  VGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + + ++   + + +   +  YF     + ++ + I       AL     +   +  ++ L
Sbjct: 867  IALGLAITFVYLLMVALYNSYFRPFVVLFSIPMAIIGAFLALALAEQAISFFVMLGMIML 926

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ D      +      S  D + ++  E +   + T++A  I +LPMA+ 
Sbjct: 927  IGLVAKNAILLVDFAN---QQKEEGKSTVDALVEAGRERIRPILMTTIAMAIGLLPMALA 983

Query: 790  ---GGSVIGSFAIPMAFGIVVA 808
               G       A  +  G++ +
Sbjct: 984  TGDGSESKNGLAWVIIGGLISS 1005


>gi|188583586|ref|YP_001927031.1| acriflavin resistance protein [Methylobacterium populi BJ001]
 gi|179347084|gb|ACB82496.1| acriflavin resistance protein [Methylobacterium populi BJ001]
          Length = 1047

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 61/491 (12%), Positives = 146/491 (29%), Gaps = 35/491 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                + RFP+                  +         +   +  + ++  + +K    
Sbjct: 31  FRSLPITRFPNIDIPIV---------SVTVTQSGAAPSELQTQVTKWVEDSVAGVKGVKH 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
            + ++ +  +  T+ F     ++   + V   +  +   L     + ++       + I+
Sbjct: 82  ILSTISEGASVTTIEFRLEVNQDRAVNDVKDAIAKIRINLPRTIDEPIISRVEIAGLPIM 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   +   +     + S  +      Q+   +          +  ++     P RL  L 
Sbjct: 142 IYGASAPAMTPE--DLSWFVDDVVARQLQGVKGVGGVERLGGVAREIRVTLKPDRLLALG 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A ++    L +    G    +     S            +    +            
Sbjct: 200 ITAADVNRQLRLTSADMAGGRGELAGGEQSIRTLGASSSLETLGATSIVVP--------- 250

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                      G R+       ++                 +     S     S      
Sbjct: 251 -----------GGRKVRLDELASLMDAAEEPRTFARFNGEPVVGFAISRAMGASDAEVAT 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L A +  ++ ++++   V    G+           A L +IV+F+ +   + 
Sbjct: 300 AVAGRIEALHAENPGVRFDLIDTSVVNTI-GNYHSAMMGLLEGAALAVIVVFLFLRDWRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+A  ++ L+V+ T  ++S LG +L   S+  I L  G+ VD  I+  E I    R  +
Sbjct: 359 TLIAAVALPLSVLPTFWVMSALGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHMRMGK 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTA 503
           S + +           +     T +     + F     G   + F +T+  ++ +S+  A
Sbjct: 419 SAYRAALEAADEIGLAVIAITATIIAIFAPVSFMPGIAGQYFKQFGLTIAAAVFMSLLVA 478

Query: 504 ISIVRAMMIFI 514
             I   +  + 
Sbjct: 479 RLITPLLAAYF 489



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 82/224 (36%), Gaps = 7/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V ++     S A   ++E V            +   +    ++  E+     + +
Sbjct: 789  DRTVRVAVEGDLQGSDALGSIIEQVMALPAATDLPEGVTIRQTGDAEVMGEVFEGFALAM 848

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L I   +    +F +  ++  V  +L L+G 
Sbjct: 849  GAGLMMVFGVLVLLFGNFLQPLTILFSLPLSIGGAILGLLVFRMPISMPVVIGILMLMGV 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAIEEMA---RGVDRVTAIVDAGRKRARPIVMTTIAMAAGMVPSAMALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG      A+ +  G++V+   S+     I L + D      R+
Sbjct: 966  GGEFRAPMAVAVIGGLIVSTGLSLVFVPAIFLLVDDLSRLFVRL 1009



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 75/252 (29%), Gaps = 6/252 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G   + V   R V L  + S +++ +      +            +            + 
Sbjct: 243 GATSIVVPGGRKVRLDELASLMDAAEEPRTFARFNGEPVVGFAISRAMGASDAEVATAVA 302

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
              + +    P       +              +  +  +A+A+++       W   L A
Sbjct: 303 GRIEALHAENPGVRFDLIDTSVVNTIGNYHSAMMGLLEGAALAVIVVFLFLRDWRATLIA 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L L +  T    +  G   N  ++ A+  + G  V+D +V  + +   ++      S
Sbjct: 363 AVALPLSVLPTFWVMSALGFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHMRMGKS 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                 ++ +E     +  +        P++      G     F + +A  + ++   + 
Sbjct: 420 AYRAALEAADEIGLAVIAITATIIAIFAPVSFMPGIAGQYFKQFGLTIAAAVFMSLLVAR 479

Query: 814 FIAAPILLFIYD 825
            I   +  +   
Sbjct: 480 LITPLLAAYFLR 491


>gi|104780325|ref|YP_606823.1| multidrug efflux protein [Pseudomonas entomophila L48]
 gi|95109312|emb|CAK14009.1| putative multidrug efflux RND transporter [Pseudomonas entomophila
           L48]
          Length = 1011

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/528 (11%), Positives = 153/528 (28%), Gaps = 47/528 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +G          +  + ++P                   + +   
Sbjct: 9   RRPVLACVVSLLILLLGA-----QAWSKLQIRQYPQMENAL-------------ITVTTA 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  +            RQ  + I++        + +  ++  
Sbjct: 51  YPGANAETIQGYITQPLQQSLASADGIDYMTSVSRQNFSVISVYARIGSDTDRLFTQLLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               V +KL  D +  +L        +++      +++ +   + +  + R    ++   
Sbjct: 111 KANEVRNKLPQDSEDPVLSKEAADASALMYISFYSNEMSN--PQITDYLSRVIQPKLATL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +       L  +    DP +L     +   ++      N           ++  S 
Sbjct: 169 PGMAEAQILGNQLFAMRIWIDPVKLAGFGLSAVDVTNAVRHYNFLAAAGEVKGEYVVTSV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                ++                      +    +     G  R        I       
Sbjct: 229 NATTELKSA--------------------EAFAALPVKIAGDSRVLLGDVARIEMGAENY 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +    I+    +   L           +          
Sbjct: 269 DTVSSFDGTPSVYIGIKATPAANPLQVIKEVRRIMPQLEEQLPSGLKVSIAYDATLFIQA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      +V++V+F+ +   +  L+   +I L++I  L  + ++G +L L ++
Sbjct: 329 SINEVIKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E I     + ++   +   G       +    IT       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENIHRHIEEGKTPRDAALEGAREIALPVVSMTITLAAVYAPI 448

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            F     G   + FA+T+  +++IS   A+++   M   ++R+++  S
Sbjct: 449 GFLTGLTGALFKEFALTLAGAVIISGVVALTLSPMMCALLLRHEQNPS 496



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  + T+ L +   L F  + G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 LRSVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV 806
                 + RD   +   E     V  ++       P+    G   ++   FA+ +A  ++
Sbjct: 412 HIEEGKTPRDAALEGAREIALPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVI 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++   ++   +P++  +     +N
Sbjct: 472 ISGVVAL-TLSPMMCALLLRHEQN 494



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 60/160 (37%), Gaps = 6/160 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAMIFLVLAAQFESFRDPLVILVTVPLSICGALVPLFLGVSSMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N       +  R+ I+++    L   + T+ A    ++P+ +    
Sbjct: 911  ITKHGILIVE--FANQLREEKGLGVREAIEEAAAIRLRPVLMTTAAMVFGMVPLILATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G          +A G+ V    ++F+   I   +     +
Sbjct: 969  GAVSRFDIGTVIATGMSVGTLFTLFVLPCIYTVLAHRGGR 1008


>gi|30248678|ref|NP_840748.1| acriflavin resistance protein [Nitrosomonas europaea ATCC 19718]
 gi|30180273|emb|CAD84580.1| Acriflavin resistance protein [Nitrosomonas europaea ATCC 19718]
          Length = 1046

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/550 (12%), Positives = 163/550 (29%), Gaps = 53/550 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    ++ L  ++  +G+     N      LD FP   P               + ++ 
Sbjct: 10  LQQRVLVLALAIIMVFVGI-----NTTRSVPLDVFPEFAPPM-------------VEIQT 51

Query: 61  DEDDFVNGFLQMYSDE----LRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +        ++         + + +              + + + FA+          V 
Sbjct: 52  EAPGLSTEEVESLVTIPIEMVVNGVPGLKTLRSKSVLGLSSVVMIFAEGTDVIRARQLVQ 111

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V  +L  + +  +++         +    + D +    I  S  +      ++  
Sbjct: 112 ERVAVVTPRLPTNIRPPIMLPPLSATSRAMKIGLSSDTL--DQIALSDAVRWTIKPKLMA 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                      +   QL    DP+RLR    T A++         S  G        R +
Sbjct: 170 VPGVANVAVWGQRDRQLQVLVDPARLRASGVTLAEVQRATGDAAVSLGGGFVDTPNQRLA 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
             +   +E   ++                                        + +  A 
Sbjct: 230 VRHLSPLETPEDL--------------------ARTVVKLANGAPIRLGDVATVREGHAA 269

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
            +   ++        I   +   +              L+ G   I ++    R      
Sbjct: 270 PIGNAIINDKPGILLIVEKQQGGNTLDVTRGVEKALTELKPGLTGIAVDSTIFRPATFIE 329

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S        AI   LV +VL +     +   ++  +I L+++    +LS    ++    
Sbjct: 330 KSLGNLTEAMAIGCALVTMVLILFTRDWRSATISLTAIPLSLLGAALMLSWWNISINTMV 389

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITA 470
           IAG+V+ +G  VD  I+  E I    R N      +  F  +        S +  +++  
Sbjct: 390 IAGLVIALGEIVDDAIIDVENIGRRLRLNAALDEPRPAFNVVLAASLEVRSAVVFASLIV 449

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           ++  + +FF     G   R  A    L+I  S+  A+++  A+ + ++    ++  D + 
Sbjct: 450 MLVFLPIFFLEGVSGTFFRPLATAYVLAIGSSLLVALTVTPALCLLLMPRDGIRHADTSF 509

Query: 528 LSRFFLIPDC 537
           +         
Sbjct: 510 VRFLKARYRP 519



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 78/216 (36%), Gaps = 7/216 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L+  + Q G+++  TR +E    ++   +    + +T         + +      + I  
Sbjct: 284 LIVEKQQGGNTLDVTRGVEKALTELKPGLTGIAVDSTIFRPATFIEKSLGNLTEAMAIGC 343

Query: 678 IAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             + ++ I     W  A  ++T + L +       + + I  N   +A ++  +G  V+D
Sbjct: 344 ALVTMVLILFTRDWRSATISLTAIPLSLLGAALMLSWWNISINTMVIAGLVIALGEIVDD 403

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLID---KSINETLGRSVYTSMAAFISVLPMAVW---G 790
            ++  + + + ++L       R   +    +  E     V+ S+   +  LP+       
Sbjct: 404 AIIDVENIGRRLRLNAALDEPRPAFNVVLAASLEVRSAVVFASLIVMLVFLPIFFLEGVS 463

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G+     A      I  +   ++ +   + L +   
Sbjct: 464 GTFFRPLATAYVLAIGSSLLVALTVTPALCLLLMPR 499



 Score = 45.5 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 63/151 (41%), Gaps = 8/151 (5%)

Query: 684  IWIRFKWYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            +W+ F+    L  +  L L      G    AL G   +L A+   +T++G +  + +++ 
Sbjct: 884  VWLEFRSLR-LTGLIALSLPFALVGGVIAVALSGGIMSLGALVGFVTVLGITARNAIMMI 942

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---- 797
               R +++     +  R LI +   E L   + T   A +++LP+ V G +         
Sbjct: 943  SHFR-HLEEKEGEMFGRALILRGTEERLIPILMTVSCAALALLPLVVRGNAPGHEIEHPM 1001

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            A+ +  G++ + + ++ +   + L       
Sbjct: 1002 ALVILGGLISSTALNLLLMPTLYLRFARGSQ 1032


>gi|312139497|ref|YP_004006833.1| preprotein translocase subunit secd [Rhodococcus equi 103S]
 gi|311888836|emb|CBH48148.1| putative preprotein translocase subunit SecD [Rhodococcus equi
           103S]
          Length = 551

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 114/537 (21%), Positives = 205/537 (38%), Gaps = 36/537 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD--- 64
             L      +  L AL            P         LG+DL+GG+ + L     D   
Sbjct: 2   RALAVFTALVAALYAL--VFFTGDKSPTPE--------LGIDLQGGTRVTLTARTPDGST 51

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA---DKVTLFLQG 121
                L+     + + +   G+    +    + + ++                  L+++ 
Sbjct: 52  PSQDSLRQAQQIIETRVNGLGVSGSEVVIDGDNLVITVP-GDDSSQARSLGQTARLYIRP 110

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-----------HAIEQSMEIIRQR 170
           V                T+   +   +                        +        
Sbjct: 111 VVGSQAAAAPGAQPAPATQAPTTPAPAPTEPAATPDVQERPFPAQDPTEPAEPSPSPAPG 170

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
                    + +   +     +   + +   ++Q    T   S    L  N         
Sbjct: 171 PAPGEPVPGSPEAAAAEIAKAKETRQSEDPAVQQQAMATLDCSAPDPLQGNDDPNLPL-- 228

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                +DG    +     I G  ++ A++ ++ +  +  V +SF   G+  + + T  NI
Sbjct: 229 -VACSTDGTTVYLLAPSIIDGQEISDASSGYNTQQSRYEVSLSFKSSGSSTWAQFTAANI 287

Query: 291 GKPLAVVLDGRVLTAPVINQAIP-SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           GK  A  LD +V++APV+  A P      I+G F    A  LA  L+ GSLP+     E 
Sbjct: 288 GKQAAFTLDSKVVSAPVVQGATPAGSSTSITGQFNQTQAQELANTLKYGSLPLSFQASEA 347

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL- 408
             V A LG  S+  G  A   GLVL++++ +V Y   G++   S+ L+ ++  A++ LL 
Sbjct: 348 ETVSATLGLASLEAGLIAGAVGLVLVLVYCLVYYRMLGVLTALSLVLSGLMVYAVMVLLG 407

Query: 409 ---GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
              G TL L  IAG+++GIG+  DS ++  ERI++E R+ +S   ++  G++RA  TI  
Sbjct: 408 RYIGFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMREGRSFRSAVPRGWARARRTILS 467

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            N  + IA  VL+    G VRGFA T+GL+ ++ +     +   ++    + +    
Sbjct: 468 GNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTILDVVVVFLVTWPLVYMASKSRFWSK 524



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 73/242 (30%), Gaps = 8/242 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             + +           +                   G              K   +    
Sbjct: 283 TAANIGKQAAFTLDSKVVSAPVVQGATPAGSSTSITGQFNQTQAQELANTLKYGSLPLSF 342

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                E V   +    +  G++   +  + +L+Y  + ++    L A  +L+L       
Sbjct: 343 QASEAETVSATLGLASLEAGLIAGAVGLVLVLVYCLVYYRMLGVLTA-LSLVLSGLMVYA 401

Query: 710 FFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L G       +L  +A ++  IG + +  VV ++R++  M+      SFR  + +  
Sbjct: 402 VMVLLGRYIGFTLDLAGIAGLIIGIGMTADSFVVFFERIKDEMRE---GRSFRSAVPRGW 458

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  +  +  +FI+   + V     +  FA  +    ++       +  P++     
Sbjct: 459 ARARRTILSGNAVSFIAAAVLYVLAVGQVRGFAFTLGLTTILDVVVVFLVTWPLVYMASK 518

Query: 826 WR 827
            R
Sbjct: 519 SR 520


>gi|290955969|ref|YP_003487151.1| AcrB/AcrD/AcrF family protein [Streptomyces scabiei 87.22]
 gi|260645495|emb|CBG68583.1| AcrB/AcrD/AcrF family protein [Streptomyces scabiei 87.22]
          Length = 1074

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/524 (11%), Positives = 144/524 (27%), Gaps = 30/524 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N     ++  ++   G   A             P+                         
Sbjct: 11  NRKLAALITIIVVAFGAYAA-----SSLKQQLIPNISFPAVT---------VTATYAGAS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    +        + RQ    + L F      +  A+ V   L   
Sbjct: 57  PQVVEDQVVKPIEDAVKSVDGVETVTSTSRQGSASVQLQFDYDADVDTKANDVQQALSKS 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ L  +     +   +  +   +      D+      + +  +  + + ++   +   Q
Sbjct: 117 SASLPDNID-PEVQKGSSDDQPTMTLAVTSDE---DQQDLAKVLEDKVVPELKAVDGVNQ 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    D  +L+    T   +        ++  G          S      
Sbjct: 173 ATVTGERDRNVVITPDSGKLQDAGLTVQSIKSALTSNGSTSPGGSVNSDKKSLSIQIGGA 232

Query: 243 VED---------KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           +             E      +GA+              S     +          +   
Sbjct: 233 LTSVQQVKDLWLSAETGAGSASGASGPGGAAAGTSSTTGSTGSGSSSPVQLKDVATVELK 292

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            +                  +     S +   +      + L           V   N  
Sbjct: 293 DSDATTLTRTNGKESLGVAITMDQDGSSSSISQDVRGKLSGLEKDLGHHSRITVVSDNGP 352

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +         +   + ++V+ + +   +  LV   SI L++++ L  L     +L 
Sbjct: 353 QVRQAVVGLFEEGLLGLLMAVVVIVVFLRSVRSTLVTAVSIPLSLLIALIALWTKDYSLN 412

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + ++ G+ L +G  VD +I+V E I+      +    ++        + +  S +T +  
Sbjct: 413 VLTLGGLTLAVGRVVDDSIVVLENIKRHLGYGEDKRTAILTAVREVSTAVTLSTLTTVAV 472

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            V +       G     F+IT+  ++L S+  +++IV A+  + 
Sbjct: 473 FVPIALVSGLVGELFGPFSITVVAAMLASLLVSLTIVPALAYWF 516



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 28/233 (12%), Positives = 78/233 (33%), Gaps = 12/233 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +   Q      +        +           A  +V + + K          +    
Sbjct: 816  ATVTQTQAPTKRQRVDGSGDAAVTATPAGDSTGTASAKVQQAIDKLDLPSGVTYEMGGVT 875

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                    +L     + ++ +   + + +   F+     L  + ++    T       + 
Sbjct: 876  ASQGSAFSQL----GLAILAAIAIVFLLLVGVFRSIRQTLVLLASIPFAFTGAFALLRIT 931

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                 + A+  +L LIG  V + +V+ D + +        +S ++ + +     L   + 
Sbjct: 932  NTPLGVAALIGMLMLIGIVVTNAIVLMDLVNQYRAQ---GMSVQEAVREGGRRRLRPILM 988

Query: 775  TSMAAFISVLPMAV----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            T++A   ++LPMA+     GG +    A+ +  G+  +   ++ +   +   +
Sbjct: 989  TALATIFALLPMALGITDSGGFISTPLAVVVIGGLFSSTLLTLVLIPTLYTMV 1041



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 80/232 (34%), Gaps = 6/232 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L+      ++  N        + +      S     V   +     ++   S I     
Sbjct: 290 ELKDSDATTLTRTNGKESLGVAITMDQDGSSSSISQDVRGKLSGLEKDLGHHSRITVVSD 349

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
            GP++ + ++     G++   +A+++ +         L    ++ L +   L        
Sbjct: 350 NGPQVRQAVVGLFEEGLLGLLMAVVVIVVFLRSVRSTLVTAVSIPLSLLIALIALWTKDY 409

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             N+  +  +   +G  V+D +VV + ++   +        R  I  ++ E       ++
Sbjct: 410 SLNVLTLGGLTLAVGRVVDDSIVVLENIK---RHLGYGEDKRTAILTAVREVSTAVTLST 466

Query: 777 MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +      +P+A+     G + G F+I +   ++ +   S+ I   +  +   
Sbjct: 467 LTTVAVFVPIALVSGLVGELFGPFSITVVAAMLASLLVSLTIVPALAYWFLK 518


>gi|242278423|ref|YP_002990552.1| acriflavin resistance protein [Desulfovibrio salexigens DSM 2638]
 gi|242121317|gb|ACS79013.1| acriflavin resistance protein [Desulfovibrio salexigens DSM 2638]
          Length = 1042

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/672 (11%), Positives = 194/672 (28%), Gaps = 46/672 (6%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
            M+  + ++IA  +       +  P                  ++ ++ + +      ++
Sbjct: 14  VMVLLVFIIIAGISSYASLPRESDPDITIP-------------YIFVQTNFEGVAPEDME 60

Query: 72  MYSD-ELRSFLKKE---GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
                 +   LK                + I + F      ++   KV   +      L 
Sbjct: 61  TLITMPIERKLKGLSGTKEISSISDDGVSIIKVEFNPDVDIDDALQKVRDKVDQAKPDLP 120

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            D     ++         +L+           ++   E   Q  D+I   +  +      
Sbjct: 121 SDLPDEPVINEVNLSEQPILNVVLSGPFSLKRLKVFAE---QLEDRIESVQGVLDAKIIG 177

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
            +  ++  E D  R+       + +       N +  G    +   +         +   
Sbjct: 178 GLEREIHVEFDMDRVAFYNIPLSSLLSSVKNANVNTPGGSVEIGKSKYLVRVPEDFK--- 234

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
                                +  I   E   R  +      I                 
Sbjct: 235 -----------------HPDEIDKIVVYEQDGRPIYLRDIATIRDHYKDPTSKSRFNGIQ 277

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                   +A  +    I+T   +    +    P     +            +  +    
Sbjct: 278 SVTIEVKKRAGENIIRIIDTVKEILKEEQQILPPTLKINLTADQSDEIRQMVADLQNNII 337

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               LVLIV+F  +      L    +I L++++T  +L +   TL +  +  ++L +G+ 
Sbjct: 338 TGLLLVLIVVFAFIGGR-SALFVSLAIPLSMLITFTVLEIFSYTLNMVILFSLILSLGML 396

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGA 484
           VD+ I+V E I       +S   +           +  S +T + A   + F+    G  
Sbjct: 397 VDNGIVVVENIYRHMGMGKSRLQAAMDATDEVAWPVIASTLTTVGAFFPMVFWPGIMGEF 456

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           +    IT+ +++  S+F A+ I   +        K+             + + +   +  
Sbjct: 457 MSYLPITVIIALTASLFVALVINPVLSAKFQDVPKLDE--DAKPGLIDRMMETLKNIYRP 514

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
              W +   +   + +   L    +++G+  +G   L     +  D+ +      +L+  
Sbjct: 515 ILEWSLDHRLWVVLFAFAFLIVSTVSFGMFGRGVEFLPKTEPKRSDVKIKAPVGTNLEAS 574

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           D   +  +        ++Y   ++    +  E+        +    IQ+      +I+ E
Sbjct: 575 DQFVKVVEKIAAEYPDIEYIIANTGESGQSDEIGTHYSLVKLDYVDIQDRSRPSSEITDE 634

Query: 665 LIRKGIVGVIIS 676
           +  +    +  +
Sbjct: 635 IRGRLQHAIRGA 646



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/205 (14%), Positives = 82/205 (40%), Gaps = 8/205 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                +L+  ++ +   + ++   +      ++  +L    I G+++  I +  +I  R 
Sbjct: 296 DTVKEILKEEQQILPPTLKINLTADQSDEIRQMVADLQNNIITGLLLVLIVVFAFIGGR- 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               AL     + L +  T     +F    N+  + +++  +G  V++ +VV + +    
Sbjct: 355 ---SALFVSLAIPLSMLITFTVLEIFSYTLNMVILFSLILSLGMLVDNGIVVVENI---Y 408

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      S       + +E     + +++    +  PM  W G ++G F   +   +++A
Sbjct: 409 RHMGMGKSRLQAAMDATDEVAWPVIASTLTTVGAFFPMVFWPG-IMGEFMSYLPITVIIA 467

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
            ++S+F+A  I   +        ++
Sbjct: 468 LTASLFVALVINPVLSAKFQDVPKL 492



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 75/234 (32%), Gaps = 20/234 (8%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V              V+  + K ++ I              +   +          
Sbjct: 799  DQKRVVTISADVSGRLAEEVIADINKAVSGIELPRGYSYKFTGEQEEQAKASAFLERAFA 858

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFN-LTAVAAVLTLIGY 732
             +   + I +  +F         +T +IL +   +    + G  F  +     VL+L G 
Sbjct: 859  GALFLIFIVLVTQFNSVATPFIILTAVILSLGGVMVGLLITGTAFGVIMTGVGVLSLAGV 918

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---- 788
             VN+ +V+ D   + +K      + R+ + ++        + T++   + ++PMA     
Sbjct: 919  VVNNAIVLID-YFEQLKE--QGRNAREALIEAGLTRFRPVLLTAITTVLGLIPMATGVSF 975

Query: 789  --------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                     G          A+ + FG+ +A   ++ +   +      W+ + A
Sbjct: 976  DFINMRLDMGSETSQWWGPMAVAVIFGLAIATVLTLVVVPTLCSLQESWQERTA 1029


>gi|229592366|ref|YP_002874485.1| multidrug efflux protein [Pseudomonas fluorescens SBW25]
 gi|229364232|emb|CAY51926.1| integral membrane component of membrane efflux system [Pseudomonas
           fluorescens SBW25]
          Length = 1008

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/628 (12%), Positives = 183/628 (29%), Gaps = 52/628 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  +G          +  L ++PS                  + +   
Sbjct: 9   RRPVLAMVVSLLIVLLG-----FQAYSKLPLRQYPSMENAL-------------ITVTTA 50

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +     +  +  +         RQ  + I++        + +  ++  
Sbjct: 51  YPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSVISIYARIGANSDRLFTELLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               V +KL  D +  +L        +++    +  Q+ +   + +  + R    ++   
Sbjct: 111 KANEVKNKLPQDAEDPVLSKEAADASALMYISFSSGQLSN--PQITDYLSRVIQPKLATL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +       +  +    DP +L     + + ++      N           F+  S 
Sbjct: 169 PGMAEAEILGNQVFAMRIWLDPVKLAGFGLSASDITDAVRRYNFLSAAGEVKGEFVVTSI 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                ++                           I+    G  R        +       
Sbjct: 229 NANTDLKSA--------------------DAFGAITVKTAGDSRVLLRDVARVEMGAENY 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +    I+    +   L +   P     +          
Sbjct: 269 NAISSFGGTPSVYIGIKATPSANPLDVIKEVRKIMPELESQLPPTLKAEIAYDATLFIQA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +    T      +V++V+F+ +   +  ++   +I L++I  L  + L+G ++ L ++
Sbjct: 329 SINEVVKTLFEAVLIVIVVVFLFLGALRSVVIPVITIPLSMIGVLFFMQLMGYSINLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E I       ++   +   G       +    +T       +
Sbjct: 389 LAMVLAIGLVVDDAIVVVENIHRHIEDGKTPLDAALEGAREIALPVVSMTVTLAAVYAPI 448

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-----SIDINPLS 529
            F     G   + FA+T+  +++IS   A+++   M   ++R+ +        +D    S
Sbjct: 449 GFLEGLTGALFKEFALTLAGAVIISGIVALTLSPMMCALLLRHDENPSGLAHRLDRIFDS 508

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +           V   I+  +  + L FT       + +G I +   A +P 
Sbjct: 509 LKRRYQSMLHGTLNTRPVVIVFALIVLCLIPVFLKFTQSQLAPDEDQGIIFMMASAPQPT 568

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNF 617
           +L  + +  +        F  +      
Sbjct: 569 NLDYLNTYTDEFIKIFKEFPEYYSSFQI 596



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 56/147 (38%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +  + T+ L +   L F  L G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 LRSVVIPVITIPLSMIGVLFFMQLMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 +  D   +   E     V  ++       P+       G++   FA+ +A  ++
Sbjct: 412 HIEDGKTPLDAALEGAREIALPVVSMTVTLAAVYAPIGFLEGLTGALFKEFALTLAGAVI 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNARI 833
           ++   ++ ++  +   +       + +
Sbjct: 472 ISGIVALTLSPMMCALLLRHDENPSGL 498



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 60/156 (38%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALIPLFLGWSSMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++ +    N       ++ R  ++++    L   + T+ A    ++P+    G 
Sbjct: 911  ISKHGILIVE--FANQLRKDKGLTPRQAVEEAAAIRLRPVLMTTAAMVFGMVPLIFATGA 968

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
              +  F I M    G+ +    ++F+   +   +  
Sbjct: 969  GAVSRFDIGMVIATGMSIGTLFTLFVLPCVYTLLAK 1004


>gi|310780311|ref|YP_003968643.1| acriflavin resistance protein [Ilyobacter polytropus DSM 2926]
 gi|309749634|gb|ADO84295.1| acriflavin resistance protein [Ilyobacter polytropus DSM 2926]
          Length = 1020

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/557 (13%), Positives = 174/557 (31%), Gaps = 37/557 (6%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  I ++      L +  ++  PS                  +  +    D VN  +   
Sbjct: 16  MIMIAMIFFGYLGLTKMPVEMMPSTSYPMA---------SISIKWDGATPDDVNDMITKK 66

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            +++   +        +    ++ I + F      E     +   +  ++ KL  D  + 
Sbjct: 67  IEDILPNIDGITEYNSTSEVGESTIDVKFDYGTDVETKITLIQNEINQISGKLPDDADEP 126

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
           ++   +   I  ++            +E            I   +   Q L       ++
Sbjct: 127 VIREQSTSGIPAMVLMLVGGDP----MEMRTYANATVKPLIERIDGVSQVLIRGGQEQEV 182

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
             E DP +L        ++S                             +     + G  
Sbjct: 183 LVEVDPEKLDNYNIGIEEISSIISD--------------------ANVNIPGGTLMEGEK 222

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                   +  T + + DI       +        ++   +         +       I 
Sbjct: 223 EYIIKVEGELSTVEEISDIVLKNSNGKLLKLKDVADVKMSIKDKDTIFRNSGKDALALII 282

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
           +     +    + +   +   +           +   +    L S S  K +      LV
Sbjct: 283 TKTDNGNSVEIVNSIKKVLKNVEGSMPINTETKIAHDSSVTILNSISSVKESAYTGIILV 342

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
            I+LF+ +      ++   SI  ++I T  LL+ +G ++ + S+ G+ LG+G+ VD +++
Sbjct: 343 SIILFLFLKNISVTMIVAMSIPTSIIFTFFLLNAMGVSINIISLMGLSLGVGMLVDDSVV 402

Query: 434 VNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA--- 489
           V + I        ++   + + G S     +  S++T +   + + F  G   + F    
Sbjct: 403 VIDNIFRRFTEFKENKLIASEKGASEVTLPVITSSLTTMAVFLPMVFQEGIVKKQFGDMS 462

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
            ++   +  S+  A+  V  M   +++     + + + +         +    +R RF  
Sbjct: 463 YSISFCLTASLIVAVMFVPMMCSKVLKKNTDIAHEGSLMKFVKQKYKDVLKLALRRRFLV 522

Query: 550 VGISILFSICSICLLFT 566
           V  +I+  I SI +  T
Sbjct: 523 VTGAIIMFIASIFMSKT 539



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 81/238 (34%), Gaps = 6/238 (2%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +    + + +   S      +K  +        ++  Q+    ++ +     +P     +
Sbjct: 765 ISDVADYVLVEGPSKIEKKDKKRKVTLYANLEKNANLQSAEASIISELNKIGLPDGVTYS 824

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
           +      +     +     V+   +   I +W    + F L  + ++ L     +     
Sbjct: 825 SSGNNKDMGAIFKQLASTFVVAVFLIYFILVWQFESFVFPLIILFSIPLSTMGAIFGLYF 884

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   +      ++ LIG  VN+ +V+ D +    +      +    +  S    L   +
Sbjct: 885 AGKSLDAMVFVGIILLIGIVVNNAIVLIDFIN---QRIDAGDNISRAVMTSGVTRLRPIL 941

Query: 774 YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            T+M   + ++P+A+    G  +    A  + FG+  A   ++ +   I   + D R 
Sbjct: 942 MTTMTTVLGMVPLAISNGEGAEMYNGMAFVVIFGLSFATILTLILIPCIYYIVEDIRE 999



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 86/241 (35%), Gaps = 6/241 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V     S++  D  F+N   +   L+  +   G+SV     ++ V K +   +P++T  
Sbjct: 255 DVADVKMSIKDKDTIFRNSGKDALALIITKTDNGNSVEIVNSIKKVLKNVEGSMPINTET 314

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL--DITKTLGF 710
                        I           I + I I   F    ++  I  + +   I  T   
Sbjct: 315 KIAHDSSVTILNSISSVKESAYTGIILVSI-ILFLFLKNISVTMIVAMSIPTSIIFTFFL 373

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G+  N+ ++  +   +G  V+D VVV D + +    +  +       +K  +E   
Sbjct: 374 LNAMGVSINIISLMGLSLGVGMLVDDSVVVIDNIFRRFTEFKENKLI--ASEKGASEVTL 431

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             + +S+      LPM    G V   F   M++ I    ++S+ +A   +  +     K 
Sbjct: 432 PVITSSLTTMAVFLPMVFQEGIVKKQFG-DMSYSISFCLTASLIVAVMFVPMMCSKVLKK 490

Query: 831 A 831
            
Sbjct: 491 N 491


>gi|251771436|gb|EES52015.1| acriflavin resistance protein [Leptospirillum ferrodiazotrophum]
          Length = 1071

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/518 (12%), Positives = 151/518 (29%), Gaps = 34/518 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +   ++  +G        + +  +D FP+      I            +   
Sbjct: 8   LKNPIAVFMASLLLVLVG-----SQSISKLPIDLFPNLAVPVLI---------VGTLYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    ++  + +          R   + I + F   +       +    + 
Sbjct: 54  ASPVDVERSVTYPLEKTLATIDDVSHIQSQSRMGVSSIQVWFNWGKDLNGGLVQAVQKIS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + ++L    ++  ++      I +V     +     + I+           Q+    + 
Sbjct: 114 QIQNQLPPGIQQPFILKFDIANIPVV--SLTVSDPKMNQIQLYDLAYNTIEPQLEQLPNV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q   +   + Q+    DP  L     +  ++     L N         +          
Sbjct: 172 SQATVNGGKVRQININVDPRELFARNLSMIQVVNAINLANLILPSGDIKIGSKD------ 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +    +IS   ++          + PV   +  +      F      +        + 
Sbjct: 226 YNLFTNTQISHDLVDV-------LRNVPVSTQAAPDGRTVPIFVKDVARVEDSAETQTNV 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + +   +    ++        LR     + L+            S  
Sbjct: 279 VRVNGENAVYLAVNKQPGSNTVAVVDAVRKAIPHLRGIPPGVHLDTF-FDQSTYIRQSIK 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L +IV+ + +   +   +   +I L+ ++ L  L     TL + +  G+
Sbjct: 338 GLYHESVQGAVLAVIVILLFLGSLRATFIIGVAIPLSALVALIFLYFTHETLNIFTFGGL 397

Query: 421 VLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            LGIG  VD +I+  E I        +S   +L          I  S IT +I    + F
Sbjct: 398 ALGIGRLVDDSIVELENIYRHFSIREESRPVALLTAAREVAMPILASTITTVIVFFPIVF 457

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G         A+T+  ++  S F + ++   +    
Sbjct: 458 MQGIARLLFTPMALTITFALFASFFVSRTVTPLLCYRF 495



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 74/239 (30%), Gaps = 3/239 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  V    +S +      +       +L   +    ++VA    +      +  I P   
Sbjct: 262 VKDVARVEDSAETQTNVVRVNGENAVYLAVNKQPGSNTVAVVDAVRKAIPHLRGIPPGVH 321

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +         I + +       V  + +A+++ +               + L     L F
Sbjct: 322 LDTFFDQSTYIRQSIKGLYHESVQGAVLAVIVILLFLGSLRATFIIGVAIPLSALVALIF 381

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                   N+     +   IG  V+D +V  + + ++  +   S      +  +  E   
Sbjct: 382 LYFTHETLNIFTFGGLALGIGRLVDDSIVELENIYRHFSIREESRPV--ALLTAAREVAM 439

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             + +++   I   P+    G     F  PMA  I  A  +S F++  +   +     K
Sbjct: 440 PILASTITTVIVFFPIVFMQGIARLLF-TPMALTITFALFASFFVSRTVTPLLCYRFLK 497


>gi|184201873|ref|YP_001856080.1| hypothetical protein KRH_22270 [Kocuria rhizophila DC2201]
 gi|183582103|dbj|BAG30574.1| hypothetical membrane protein [Kocuria rhizophila DC2201]
          Length = 1213

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/725 (11%), Positives = 213/725 (29%), Gaps = 64/725 (8%)

Query: 159 AIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL 218
           A+       +   D++  +E      G+ R++         ++ ++     A  +   V 
Sbjct: 44  AVTIPGTETQNLADRLK-AEMPEANQGTGRVVFHTTDGSAFTQAQKDGIADALKATQDVS 102

Query: 219 PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMG 278
              +     F  +   D    Q          G           P        +    + 
Sbjct: 103 -GVASTVNPFERQQQLDDGRQQLKDGRAKLDQGERQIAQLKQSLPPGVSAEQVLKQRGVD 161

Query: 279 ARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG 338
                +          +    G          +  S          +E     A M    
Sbjct: 162 PAAMEQQKAQLEEGEKSFERMGDYRVVSKDQNSAISVVNFTQEQNAVEADTKNAVMDAVR 221

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
           S P+    V+     A   +  +       V    L++L M +       +   +  L V
Sbjct: 222 SHPVDGVDVDFSQEIAQDITALLGPSEVIGVVVAALVLLIM-LRAVVPAALPVLTALLGV 280

Query: 399 ILTLALLSLLGATLTLPS---IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
            +   +       + + S   + G++LG+ + +D ++ V  R R++ R    V  S+ M 
Sbjct: 281 AVASCITLSFSGVVDMMSVTPMLGVMLGLAVGIDYSLFVLNRHRQQLRGGMPVRESIGMA 340

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
              A + +F + +T ++A V L   G   +       GL++L+++   +++  A++    
Sbjct: 341 VGTAGTAVFFAALTVIVALVALNVTGIPFLGLMGTAAGLAVLVALLMTLTLTPALLSLAG 400

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
                +           +    + +         V  + +  + ++              
Sbjct: 401 TRVLPRKQRGAEPREGVIDEHNVPLHLRHPWLSTVACAAVLIVLALPAQSMRLGLPDAST 460

Query: 576 KGGIQLGVLANRPV-------------------------------DLSVVRSNLESLQIG 604
           +        A + +                               D    R   +     
Sbjct: 461 EAQDSTQYRAYQRIAEDFGAGENGPIAVVVDLPEGLDKARAQEKMDAVSDRLAQQEDVAN 520

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTR-----VLEMVKKKITEIVPLSTIQNTEIVGP 659
            +  Q  D     ++++  + G + A T      + ++     ++      +  T     
Sbjct: 521 VLPGQLTDDRTTGVIQVIPESGPAEAATENLVGSIRDLNGDLGSQQDVHVGVAGTTAANI 580

Query: 660 KISRELIRKGIVGVIISAIA-MLIYIWIRFKWYFALGAITTLILDITKTLGFFA------ 712
            +S+ L  K  + + +  +  +L+ + +       + A    +L +  +LG         
Sbjct: 581 DVSQLLGEKLPLYLGVVMVISILLLLMVFRSILVPVIATLGFLLSVLASLGAVVAVYQWG 640

Query: 713 LFGIEF---NLTAVAAVL------TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
             G  F   +   + + L       L G +++ ++ +   MR+    Y      R  +  
Sbjct: 641 WGGAVFGVHDPGPILSFLPTLMIGILFGLAMDYQLFLVSGMRE---AYVHGHPARQAVVY 697

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG-GSVIGSFAIPMAFGIVVAAS-SSIFIAAPILL 821
                    V  +    ISV    ++   ++I      +A G+++ A    + +   ++ 
Sbjct: 698 GF-RAGRSVVTAAAIIMISVFAGFIFSELAMIKPIGFALAGGVLLDAFVVRMLLVPAVMR 756

Query: 822 FIYDW 826
            + + 
Sbjct: 757 LLGEK 761



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 83/250 (33%), Gaps = 6/250 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A      + +    +S +           + + +  + +    +  +      V   + 
Sbjct: 162 PAAMEQQKAQLEEGEKSFERMGDYRVVSKDQNSAISVVNFTQEQNAVEADTKNAVMDAVR 221

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                    +      +    L+    V + +   A+++ I +R     AL  +T L+  
Sbjct: 222 SHPVDGVDVDFSQEIAQDITALLGPSEV-IGVVVAALVLLIMLRAVVPAALPVLTALLGV 280

Query: 704 ITKTLGFFALFGIE--FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              +    +  G+    ++T +  V+  +   ++  + V +R R+ ++     +  R+ I
Sbjct: 281 AVASCITLSFSGVVDMMSVTPMLGVMLGLAVGIDYSLFVLNRHRQQLRG---GMPVRESI 337

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             ++        + ++   ++++ + V G   +G         ++VA   ++ +   +L 
Sbjct: 338 GMAVGTAGTAVFFAALTVIVALVALNVTGIPFLGLMGTAAGLAVLVALLMTLTLTPALLS 397

Query: 822 FIYDWRAKNA 831
                     
Sbjct: 398 LAGTRVLPRK 407


>gi|91778117|ref|YP_553325.1| AcrB/AcrD/AcrF family cation efflux protein [Burkholderia
           xenovorans LB400]
 gi|91690777|gb|ABE33975.1| cation/multidrug efflux pump, AcrB/AcrD/AcrFfamily, RND superfamily
           [Burkholderia xenovorans LB400]
          Length = 1106

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 151/550 (27%), Gaps = 46/550 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G L        +  +   P+                  + L+ +
Sbjct: 9   RRPVATALLAIAILISGALA-----YFRLPVAPLPNIAFPV-------------IALQAN 50

Query: 62  EDDFVNGFLQMYS-DELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +     + L      +              + I + F  +R     A  V  
Sbjct: 51  MAGASPETMAATVAEPLERRLATIADVNQLTSISYVGSSMIIVVFGLNRDINGAARDVQA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   + L    + N          + ++    +        +           Q+   
Sbjct: 111 AIQAARADLPTTLRSNPTYRQYNPAGAPIMV-LALTSDTLTKAQLYDSADSVIQQQLSQV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   Q       L  +  E +P +L         +                         
Sbjct: 170 DGVGQITLGGGALPSVRVELEPGKLNSYGIGLEDVRAAI--------------------G 209

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                        G      T+N       P  D+                 +      +
Sbjct: 210 AANANSAKGHIDQGEQRYVVTSNDQISKAAPYRDVVIAYRDGAPVLLRDVAQVRDSNENI 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +  +         I       +   T+E       ++ A         V      +   
Sbjct: 270 RNAGLYNGKSAVLVIVYPTPGSNVVQTVEQIRSRLPIIEAALPSAIHVNVAIDRSESVRA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  + T  I   LV+ V+F+ +L  +  L+   ++ L+++ +   + LLG ++   S+
Sbjct: 330 SVADTERTLFIAVLLVVGVVFVFLLSPRATLIPAVALPLSIVGSFGPMYLLGYSIDNLSL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + +G G  VD  ++V E I            +   G +    T+   +++ +   + +
Sbjct: 390 MALTIGTGFVVDDAVVVLENIVRHLEAGLDPKEAALRGSAEVGFTVISMSLSLIAVFLPI 449

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
               G        FA+T+ ++IL+S+  +++I   M  +++  ++   +           
Sbjct: 450 LLMPGIVGLLFHEFAVTLSIAILLSLLISLTITPVMCAYLLSRERTMHLQSRWAHWVEAQ 509

Query: 535 PDCIAIQFMR 544
            +     + R
Sbjct: 510 FERFKQAYAR 519



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     L L I  + G   L G   +  ++ A+    G+ V+D VVV + +   ++ 
Sbjct: 357 RATLIPAVALPLSIVGSFGPMYLLGYSIDNLSLMALTIGTGFVVDDAVVVLENI---VRH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
               +  ++   +   E     +  S++     LP+ +  G V      FA+ 
Sbjct: 414 LEAGLDPKEAALRGSAEVGFTVISMSLSLIAVFLPILLMPGIVGLLFHEFAVT 466



 Score = 45.8 bits (106), Expect = 0.034,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 99/246 (40%), Gaps = 16/246 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + +      + Q           + +      + +   +++ +   +I   +++    
Sbjct: 850  SAMMTFSNSHTATQVNHQSGLVAGTISFNLPAGGSLSEAGQLIAQAERDIGMPASVHGAF 909

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFAL 713
                +   + +    + ++ + + + I + I ++       I + +    I  TL    +
Sbjct: 910  AGAAQAYAQSMGAVPLLILAALVVVYIVLGILYENTVHPLTILSTLPSAGIGATLALL-I 968

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM----RKNMKLYTTSISFRDLIDKSINETL 769
            FG  F++ A+  ++ LIG    + +++ D      R+        ++ RD I ++    L
Sbjct: 969  FGTPFSVIAMIGIILLIGIVKKNGIMMVDVAIQLQREE------GMNARDAIHQAAVVRL 1022

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ AA +  +P+A+    G S+     + +  G++V+   +++    I L++   
Sbjct: 1023 RPIMMTTAAAVLGAVPLAIGIGQGASLRQPLGVTVMGGLLVSQVFTLYTTPVIYLYLDRL 1082

Query: 827  RAKNAR 832
            RA+ AR
Sbjct: 1083 RARLAR 1088


>gi|327193966|gb|EGE60841.1| putative multidrug efflux transporter protein [Rhizobium etli
           CNPAF512]
          Length = 1038

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 67/584 (11%), Positives = 158/584 (27%), Gaps = 40/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +   GL            +   P       I+            L   
Sbjct: 8   QRPVATTLLAIGVILAGLA-----GYRLVPVAALPQVDFPT-IN--------VSAQLSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +     +    +        S       I L F  +R  +  A  V   +  
Sbjct: 54  SPQTMATSVATPLIKQFETIPGISEISASSSLGSTSIVLQFDLNRNIDAAAADVQAAISH 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  +         T      ++L     + +    +++  E I      +      
Sbjct: 114 ATRQLPDNLTTPPSYRKTNPADAPVMLLSVQSNTMPRSKLDEIAEDI--ISPSLSTLPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  E DP++L         ++      N+ +                 
Sbjct: 172 AQVSVFGAQTYAVRVEVDPNKLLARGIGIDTVNKALSAANSQQPVGTLQ----------- 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    +       TAN      +    +                ++   +     G
Sbjct: 221 ---------NNAQSMTITANTQRTNAEQFRSLVIANPNGAPIHLGDVADVQDGVENQYTG 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    ++        L A        +V          + +
Sbjct: 272 SWYDGQRGIILAIQRQPDANTVDVVDAINAKLPQLHAEIPASVTTVVMNDAAKPIRAAIA 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +  GLV++V+++   +    ++   ++ L++I T  ++ +LG ++   S+ G+
Sbjct: 332 DVKFTLFLTIGLVVLVIYLFTGHATATIIPGLAVPLSLISTFGMMYVLGYSIDNISLLGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL VD  I++ E I     +   V  +   G      TI   +++ +   + +   
Sbjct: 392 TLAVGLVVDDAIVMLENILRHVEEGMPVREAAIKGAGEVSYTIISMSVSLIAVFIPILLM 451

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG   R    F + + ++I+ S   ++++   +   +        + I      F     
Sbjct: 452 GGVVGRVFNEFGMVVAIAIISSAIVSLTVTPMLGSRLSNNHSRPPLLIRLFDAGFERTLR 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                +          +   + S+ L     +     F     +
Sbjct: 512 GYDNAVGWCLQHRLTILGVFLGSVALTIYFFMTLPTSFFPQEDI 555



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/232 (13%), Positives = 83/232 (35%), Gaps = 12/232 (5%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +     +  +     +    + L  Q         V++ +  K+ ++        T 
Sbjct: 257 DVADVQDGVENQYTGSWYDGQRGIILAIQRQPDANTVDVVDAINAKLPQLHAEIPASVTT 316

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +V    ++ +       K  + + I  + ++IY+         +     + L +  T G 
Sbjct: 317 VVMNDAAKPIRAAIADVKFTLFLTIGLVVLVIYL-FTGHATATIIPGLAVPLSLISTFGM 375

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G   +  ++  +   +G  V+D +V+ + +   ++     +  R+   K   E   
Sbjct: 376 MYVLGYSIDNISLLGLTLAVGLVVDDAIVMLENI---LRHVEEGMPVREAAIKGAGEVSY 432

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
             +  S++     +P+ + GG V      F + +A  I+ +A  S+ +   +
Sbjct: 433 TIISMSVSLIAVFIPILLMGGVVGRVFNEFGMVVAIAIISSAIVSLTVTPML 484



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 93/265 (35%), Gaps = 6/265 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                +    +       +         V  SN   +Q            +     + +  
Sbjct: 749  IVEYDTSKPWDDQKLSEIRVASSNGSLVPLSNFAHVQRTTGPVTINQTGQLVSTTVSFNL 808

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + V+ +     + +   EI   + +  +     +I ++        ++ + + + + + 
Sbjct: 809  PEGVSLSDATAAIDEIKKEISLPADVFTSYGGTAEIFQQSQGNTPYLILAAVLTIYVVLG 868

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++ +   L  ++ L       L    + G + ++ A+  +L LIG    + +++ D  
Sbjct: 869  VLYESFIHPLTILSGLPAAAFGALLALKIMGFDLSIIALIGLLMLIGIVKKNAIMMIDVA 928

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPM 801
             + M+  TT       I  +        + T+  A +  LP+A+  G    +     I +
Sbjct: 929  VETMR--TTGEKATAAIHDACVRRFRPIMMTTFCALLGALPIALGTGASSELRQPLGIAV 986

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW 826
              G+VV+   ++FI   I + +  +
Sbjct: 987  VGGLVVSQLLTLFITPVIFVEMDRF 1011


>gi|45658900|ref|YP_002986.1| acriflavin resistance [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602145|gb|AAS71623.1| acriflavin resistance [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 1083

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/522 (10%), Positives = 156/522 (29%), Gaps = 42/522 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   ++     +I   G L      L +  +D FP+                  +     
Sbjct: 9   QRPIFVTCTVLLILVAGYLS-----LSKLGVDLFPNVTIPVVTVT---------VPYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +           +    + + F      +    +V   +  
Sbjct: 55  APNEIETLIAKPVEDELSTISGVKRVRAVCNEGVGTVIVEFTLETDVKYAEQQVRDKVSS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D K+ ++      +  IV+     +   +   + + E ++Q    +  ++   
Sbjct: 115 VKPKLPNDAKEPVIRRIDPADQPIVIIALRAELPDAELYDIANEEVKQI---LLSTKDVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++  E D ++L++ +   + +S        +                   
Sbjct: 172 NVTIYGGRKREIHVELDRNKLKEHMIPASVVSNRLASGGMNIPAGKVSK----------- 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +   L   T N      +                      +   +       
Sbjct: 221 --------TDKELVYRTINEFQSPEEIRDTPISLFGNEVPIKIGQLGEVKDTVEDETSRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG---SLPIKLNIVEERNVGADLGS 358
            L        +   ++  +     ++       +                  +      +
Sbjct: 273 YLNGRKAVFLMVYKQSGSNTVAVAQSVKKKVLEINQDLSKRNGSPELTSTNDSSVTIDNN 332

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               K T  I   L +IV+ + +   +  L+   ++  +++    L+++ G T+ + ++ 
Sbjct: 333 IYDVKETIIIGIILTIIVVLLFLGSVRSTLITGLALPNSLLGAFILMAIAGFTVNVMTLL 392

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + L +GL +D  I+V E I       ++   +   G       +  + +T +   + + 
Sbjct: 393 ALSLAVGLLIDDAIVVRENIFRHREMGKTAREASIEGTKEVTLAVIATTMTVIAVFMPIA 452

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           F     G  +R F +T+  ++LIS++ A++I   +  +    
Sbjct: 453 FISGIVGQFLREFGLTVCFALLISLYDALTIAPMLSAYFGGK 494



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 56/149 (37%), Gaps = 8/149 (5%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +         L     L   +       A+ G   N+  + A+   +G  ++D +VV 
Sbjct: 350 VVLLFLGSVRSTLITGLALPNSLLGAFILMAIAGFTVNVMTLLALSLAVGLLIDDAIVV- 408

Query: 742 DRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSF 797
              R+N+  +     + R+   +   E     + T+M      +P+  + G  G  +  F
Sbjct: 409 ---RENIFRHREMGKTAREASIEGTKEVTLAVIATTMTVIAVFMPIAFISGIVGQFLREF 465

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + + F ++++   ++ IA  +  +    
Sbjct: 466 GLTVCFALLISLYDALTIAPMLSAYFGGK 494



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            + + +    + IY+ +      +   +  +  L L +        +     ++ ++  ++
Sbjct: 912  MAIAMGLGILFIYMVLASLYESFITPIAIMLVLPLALCGAFIALFITQKSLDIFSMIGLI 971

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG +  + +++ D      +L +     ++ I ++  E L   + TS A    +LP+A
Sbjct: 972  MLIGVATKNSILLVDF---TNQLLSQGKEMKEAIIEAGRERLRPILMTSFALIAGMLPIA 1028

Query: 788  VWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +          S  + +  G++ +   ++ +      +I        R
Sbjct: 1029 IGLNEASRQRTSMGVAIIGGLISSTILTLVVVPAAFSYIEKLNQMVRR 1076



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 55/524 (10%), Positives = 146/524 (27%), Gaps = 42/524 (8%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            ++   +++    +I  + L++                      +  G  L   S + L+V
Sbjct: 588  LKRPFFILSGAILIFVVSLVLTKFIPKTFLPAQDEGKFTVTLDMPPGTSLEKMSQIALQV 647

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D              ++RS+ K+  I           + +    SR ++    +   FL+
Sbjct: 648  D-------------QKIRSY-KEIKIVSMFNTNRSTNMFVEMVPSRDRKMNTTQFKAFLR 693

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               ++        ++                +       +E   + + +R+ +       
Sbjct: 694  NELAEF--SYANPIVKDVDNVGGGQRPFTLTVSGQKREVVEDYAKKLFERLQKSPALLDV 751

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                 +     ++     P R +++L                  G + G       +G  
Sbjct: 752  DTSYRTGAPEFRVV----PDREKEVLLGV--------------PGTIIGTELRTLVEGTT 793

Query: 241  YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              V  +  +          +              +        +             ++ 
Sbjct: 794  PAVYRENGVEYDIRVRLKDSQRDLKENFYSSFVPNFNNRLIPIQNVAKAEESTGLATINR 853

Query: 301  RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  V   A  + K    G    E   I    +   S        +  +      S +
Sbjct: 854  LNRNKAVEIYADVNPKGPEMGGAMEEVTKISQIEIPLPSGVKIGYSGQAESFKEMGVSMA 913

Query: 361  IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF-SIFLNVILTLALLSLLGATLTLPSIAG 419
            I  G   +   +VL  L+          +A    + L +      L +   +L + S+ G
Sbjct: 914  IAMGLGILFIYMVLASLYESF----ITPIAIMLVLPLALCGAFIALFITQKSLDIFSMIG 969

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +++ IG+A  ++IL+ +   +   + + +  ++          I  ++   +   + +  
Sbjct: 970  LIMLIGVATKNSILLVDFTNQLLSQGKEMKEAIIEAGRERLRPILMTSFALIAGMLPIAI 1029

Query: 480  ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
                         + +   ++ S    + +V A   +I +  +M
Sbjct: 1030 GLNEASRQRTSMGVAIIGGLISSTILTLVVVPAAFSYIEKLNQM 1073


>gi|254521664|ref|ZP_05133719.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
 gi|219719255|gb|EED37780.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
          Length = 1028

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 89/668 (13%), Positives = 207/668 (30%), Gaps = 59/668 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  IGL+ +      +  L+  P                   +     
Sbjct: 9   RRPVTTIMCFVSLVVIGLIASF-----RLPLEALPDISAPFLF---------VQIPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             + V   +    +E  + +        S       I + F+D  R     A      + 
Sbjct: 55  TPEEVERTIIRPVEESLATMTGIKRMRSSATSEAALIFIEFSDWDRDIAIAASDARERID 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S L  D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AIRSDLPDDLQRYNVFKWSSSDQPVLKVRLASTTDLTTAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +     ++    DP+RL     +  ++S      N S            D +G +
Sbjct: 172 ARVDITGAPPNEVEIAIDPNRLNAHGLSINELSERLRTLNFSISAGQI------DDNGQR 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+   EI+ +                   +    + A+        ++    A +  G
Sbjct: 226 VRVQPVGEITDLQE-----------------MRDLVINAKGLRLGDIADVRLKPARMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +       A      +RA +    + I    N   A   S 
Sbjct: 269 RRLDGNPAVGLDIFKERSANLVEVSRAALAEVESIRAEASMRDVQIKVIDNQGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                  A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 LELAEAGAVGLILSITVLFFFLRHWPSTLMVTLAIPICFTITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPGQPRLASIIGTRNVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   A+S++  +   +   K + S     ++R    
Sbjct: 449 FGETNNISIFMSQIAITISVSLLASWLVAVSLIPMLSARMATPKLVHS-QTGMIARLQRR 507

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-----------GIDFKGGIQLGV 583
              +    +  R W +   +L  + S+  +    ++            G  +KG      
Sbjct: 508 YATLLDWSLHHRGWSLLGIVLVVLVSLVPMKLTKIDMFGGDGGKDIFIGYMWKGAYTYRQ 567

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           +++    +                +  +  ++     +      +     + E ++K + 
Sbjct: 568 MSDEVARVEKWIDQNRERLHVKQVYSWYSEQEGSSTVVTLDEKYAKDIKALQEELRKGLP 627

Query: 644 EIVPLSTI 651
           +       
Sbjct: 628 KSARTDYF 635



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 95/245 (38%), Gaps = 11/245 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +L ++ +G  + Q     +   + ++    + V      + ++  +  +   +    T  
Sbjct: 770  SLVTVDVGSSATQIGRTNRQTTLTIKANLAEKVTAPDGRKAMESVLKPMNFPAGYGFTFD 829

Query: 657  VGPK-ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
             G      E +++ +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 830  GGDYGNDDEAMQQMVFNLLIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 889

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +  N++      +    + +   E L   + 
Sbjct: 890  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN-NLRRGGMGRT--QALVEGSRERLRPIMM 946

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            T   A ++++P+          G      A  +A G+  +   S+     I   + D R+
Sbjct: 947  TMGTAILAMVPISLTNTQMFGNGPEYAPMARAIAGGLAFSTVVSLLFLPTIYAVLDDLRS 1006

Query: 829  KNARI 833
               R+
Sbjct: 1007 AATRL 1011



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 92/287 (32%), Gaps = 9/287 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R R     IS      +   +    +    D +    L + A       +    L+  ++
Sbjct: 206 RLRTLNFSISAGQIDDNGQRVRVQPVGEITDLQEMRDLVINAKGLRLGDIADVRLKPARM 265

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP-LSTIQNTEIVGPKIS 662
                 + +      +  +            L  V+    E       I+  +  G  ++
Sbjct: 266 NYGRRLDGNPAVGLDIFKERSANLVEVSRAALAEVESIRAEASMRDVQIKVIDNQGKAVT 325

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             L+     G +   +++ +  +    W   L     + +  T TLGF    G+  N+  
Sbjct: 326 SSLLELAEAGAVGLILSITVLFFFLRHWPSTLMVTLAIPICFTITLGFMYFVGVTLNILT 385

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF-- 780
           +  +L  +G  V++ VVV + + +  +          +I      T   ++  S      
Sbjct: 386 MMGLLLAVGMLVDNAVVVVESIYQERERMPGQPRLASII-----GTRNVAIALSAGTLCH 440

Query: 781 -ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I  +P      + I  F   +A  I V+  +S  +A  ++  +   
Sbjct: 441 CIVFVPNLFGETNNISIFMSQIAITISVSLLASWLVAVSLIPMLSAR 487


>gi|83646737|ref|YP_435172.1| cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
 gi|83634780|gb|ABC30747.1| Cation/multidrug efflux pump [Hahella chejuensis KCTC 2396]
          Length = 1058

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/588 (12%), Positives = 156/588 (26%), Gaps = 37/588 (6%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           +I  + L I           +  P                   +  E    +     L  
Sbjct: 16  VIVLLMLWIGGYWAFMTMPKESNPDITIPIIY---------VSVSHEGIAPEDAERLLAR 66

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             ++    L+          +    +TL F      +     V   +    +KL V+  +
Sbjct: 67  PLEQELRTLEGLKEMRSVAAEGYASVTLEFLAGFDPDQALTDVREKVDTAKAKLPVESDE 126

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
             +V     +  ++    +       A +Q + I R+    I      ++          
Sbjct: 127 PRVVEINVSQFPVLNLSLSGP----FAEDQLVRIARELKRHIEGIPEVLKVEIGGDREDL 182

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           L    D   L +     A++       N             R       ++E+  ++ G+
Sbjct: 183 LELVADMQVLERYGIDYAQLFSLISNNNRLVAAGNIDTGAGRMVIKVPGVIENLPDLLGM 242

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
            +                         R         + +          +         
Sbjct: 243 PIKIHE--------------------GRVITFGDVATVQRTFKDPGGFARVDGKPAVVLE 282

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            S +A  +   TIET   +  +                                     L
Sbjct: 283 ISKRAGANIIETIETVKAVVKIAEERWPSSLTVTYITDESKQIREMLRDLLNNVLFAVVL 342

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           VLIV+ +  +  +  L+   +I    + +L ++  LG TL +  +  ++L  G+ VD  I
Sbjct: 343 VLIVM-IAAMGMRPALLVGLTIPGAFLASLLVIQALGFTLNIVVLFSLILVAGMLVDGAI 401

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFA 489
           +V E          +   +      R    +  S  T L   + L F+ G     ++   
Sbjct: 402 VVAELSDRNLESGMARKEAYAQAAYRMAWPVIASTATTLAVFMPLLFWPGMVGEFMKYLP 461

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
            T+ + ++ S+  A+  +  +     R K   +    P          +A          
Sbjct: 462 ATVIVCLISSLLMALIFMPVLGGVFGRSKAPVNASNGPSRFTHWYAVALARLLAAPGKTL 521

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +    L  +  +     +               VL +   DLSV   +
Sbjct: 522 LMFLALLVLTYVAYGRYNHGVEFFPEVEPDSAQVLVHARGDLSVYEKD 569



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 89/247 (36%), Gaps = 4/247 (1%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           + + +   R +    V +   + +      +        L   +    + +     ++ V
Sbjct: 242 MPIKIHEGRVITFGDVATVQRTFKDPGGFARVDGKPAVVLEISKRAGANIIETIETVKAV 301

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
            K   E  P S          K  RE++R  +  V+ + + +LI +        AL    
Sbjct: 302 VKIAEERWPSSLTVTYITDESKQIREMLRDLLNNVLFAVVLVLIVMIAAMGMRPALLVGL 361

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+      +L      G   N+  + +++ + G  V+  +VV +    + +   + ++ +
Sbjct: 362 TIPGAFLASLLVIQALGFTLNIVVLFSLILVAGMLVDGAIVVAE---LSDRNLESGMARK 418

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +   ++        + ++       +P+  W G ++G F   +   ++V   SS+ +A  
Sbjct: 419 EAYAQAAYRMAWPVIASTATTLAVFMPLLFWPG-MVGEFMKYLPATVIVCLISSLLMALI 477

Query: 819 ILLFIYD 825
            +  +  
Sbjct: 478 FMPVLGG 484



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/227 (12%), Positives = 79/227 (34%), Gaps = 23/227 (10%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +    + ++    + V     +  +K+ + +      +             ++       
Sbjct: 789  DGERSLTVEADVAEGVQADERITALKESLAKRPLDDVMVKFAGEDEDQRETMVFLA-QAF 847

Query: 674  IISAIAMLIYIWIRFKWYFALGAITT--LILDITKTLGFFALFGIEFNLTAVA-AVLTLI 730
            II+ + M + + ++F   +    + +  +       LG   + G  F +  V   ++ L 
Sbjct: 848  IIAIMLMALILVVQFNSVYQAALVLSAIVFSTAGVLLGLM-ITGRPFGIVMVGLGLIALA 906

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G  VN+ +++ D      ++  +  S  +   ++    L   + T++   + ++PM +  
Sbjct: 907  GIVVNNNIILIDTYN---QMRASGASPYEAALETGKVRLRPVLLTAVTTVLGLMPMVLGV 963

Query: 789  ----------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLF 822
                       GG         +  +A G+  A   ++ I   +L+ 
Sbjct: 964  NVDLMTPSLGIGGPSTQWWTELSSAIAGGLTFATFLTLLITPCLLVI 1010


>gi|88800488|ref|ZP_01116052.1| acriflavin resistance plasma membrane protein [Reinekea sp. MED297]
 gi|88776818|gb|EAR08029.1| acriflavin resistance plasma membrane protein [Reinekea sp. MED297]
          Length = 1037

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/515 (12%), Positives = 148/515 (28%), Gaps = 42/515 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++L++++   G++  +         +  P       + +G  L G S        
Sbjct: 8   RTRTVLLLFALVFISGIVALI-----SIPKEAQPDITIP-YVYVGTGLEGIS-------- 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            +  +  L    ++  + L+       +  + +  ITL FA     ++    V   +   
Sbjct: 54  PEDSDRLLVRPLEQELNSLEGLKELTSTASEGRASITLEFAIDVDIDDALTDVREAVDAA 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +      +  ++      D            +     D++      ++
Sbjct: 114 KNNLPADADDPTVQEINLAKFPVINISLAGDVDER----VLFHVAEDLKDRLEALPGVLE 169

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                +         DP+ +     +  ++                          N  L
Sbjct: 170 TPIKGKREEVAEIIIDPALMASYNISHDEL--------------------FSLVSRNNQL 209

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V      +G            +T + ++++     G             +          
Sbjct: 210 VAAGNLDTGAGRFSFKVPGLIETEQDILNLPVKVDGNTVVHFRDIAVGQRTYKDADTLSR 269

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +          + +   +   TI+    +   ++            + N        S  
Sbjct: 270 VNGQPSVTLEVTKRVGENVIETIDQVKAVVEEVKPFWPDGITVTFTQDNSIMIKQQLSDL 329

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +      LV IV+   +      LV   +I  + +  +  LS+LG TL +  +  ++L
Sbjct: 330 FNSVLTATLLVFIVIVWALGVRSATLV-GLAIPSSFLAAILTLSMLGITLNIVVLFALIL 388

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD  I+V E       +      +     +R    I  S  T L   + L F+ G
Sbjct: 389 SVGMLVDGAIVVTEYADRRMSEGADRRSAFREASTRMAWPIIASTATTLAVFMPLLFWPG 448

Query: 483 GAVRGFAI---TMGLSILISMFTAISIVRAMMIFI 514
                      T+ +++  S+  A+  V A     
Sbjct: 449 IPGEFMGYLPKTVLITLTASLIMALIAVPAFGFLF 483



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 61/205 (29%), Gaps = 6/205 (2%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            +   R      +    +           V L+            ++ VK  + E+ P  
Sbjct: 247 TVVHFRDIAVGQRTYKDADTLSRVNGQPSVTLEVTKRVGENVIETIDQVKAVVEEVKPFW 306

Query: 650 TIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               T       S  + ++       V+ + + + I I        A      +      
Sbjct: 307 PDGITVTFTQDNSIMIKQQLSDLFNSVLTATLLVFIVIVWALGVRSATLVGLAIPSSFLA 366

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +   ++ GI  N+  + A++  +G  V+  +VV +      +  +     R    ++  
Sbjct: 367 AILTLSMLGITLNIVVLFALILSVGMLVDGAIVVTE---YADRRMSEGADRRSAFREAST 423

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGG 791
                 + ++       +P+  W G
Sbjct: 424 RMAWPIIASTATTLAVFMPLLFWPG 448


>gi|315659565|ref|ZP_07912426.1| membrane protein YdfJ [Staphylococcus lugdunensis M23590]
 gi|315495298|gb|EFU83632.1| membrane protein YdfJ [Staphylococcus lugdunensis M23590]
          Length = 843

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/596 (11%), Positives = 194/596 (32%), Gaps = 60/596 (10%)

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
           +D       V           I++   +  A+I+ + +  +    +       L    + 
Sbjct: 106 KDIKNDDKHVDKISDPYQTKQISKDKSTAIAEITYDKSATSLSDKSRDNVKDHLKDLRDD 165

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
              +      G  +   G  + + G+++  +VL +         +   S  + +   + +
Sbjct: 166 HNVQTELTGNGMQTNEVGGSSELVGVIVAFVVLLITFGSFIAAGLPIVSALIGLGSGVGI 225

Query: 405 LSLLGATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
           +SLL     +P++     +++G+ + +D  + +  R R+  +        + +    A S
Sbjct: 226 ISLLTFAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGVGLAVGTAGS 285

Query: 462 TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            +  + +T +IA   L   G   +        +S+  ++F+A++++ A++       K K
Sbjct: 286 AVIFAGVTVIIAVCGLSLVGIDFLSVMGFASAISVAFAVFSALTLLPALISIFHNQIKPK 345

Query: 522 SIDINPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSI 561
           +      +          +                                         
Sbjct: 346 TTKSEFKNHVDTPWSKFVVGNSLAAVLLGLIILVAAAIPVSHMRLAIPDDGVKPSDTTQK 405

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV-----------RSNLESLQIGDISFQN 610
                    +G  F G I + +      D                S+++++ +      +
Sbjct: 406 KAYDIISDKFGEGFNGQIPMLINVKDQKDNPQQLQKDLKSLYKDVSDMKNVDVVSQPQMS 465

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG- 669
            + +   +  +  +  ++ A   +++ ++    +       +        I+ ++ +K  
Sbjct: 466 KNNDYALMAVIPKKGPNTEATNDLVQDLRDYNKDAKDKYGFKTEISGQSVINIDMSKKLN 525

Query: 670 ----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFG 715
               +   +I  +A ++ + +       L A+   +L +  TLGF           +LFG
Sbjct: 526 EAIPLFAGVIVILAFVLLMIVFRSIIIPLKAVLGFVLSLMATLGFTTLVMQDGFMKSLFG 585

Query: 716 IEFNLTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           +E     +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+  
Sbjct: 586 VETTGPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTRDNAYSIKVGLKESGP 642

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYD 825
             +  ++  F            +I S  + ++FG++  A    + I   +      
Sbjct: 643 VIIAAALIMFSVFFAFVFQEDVMIKSMGMALSFGVLFDAFVVRMMIIPALTQLFGK 698



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 87/260 (33%), Gaps = 7/260 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
             G +   +  +    L  ++++ + +      +Q     K+    +     D  A +  
Sbjct: 89  DNGIVSKSMTKDIKKTLKDIKNDDKHVDKISDPYQTKQISKDKSTAIAEITYDKSATSLS 148

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
            +        +  L    N +        +    G    ++  I   + + I F  +  A
Sbjct: 149 DKSRDNVKDHLKDLRDDHNVQTELTGNGMQTNEVGGSSELVGVIVAFVVLLITFGSFIAA 208

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNMKL 750
              I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   ++
Sbjct: 209 GLPIVSALIGLGSGVGIISLLTFAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR---QV 265

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
             T   +   +  ++       ++  +   I+V  +++ G   +       A  +  A  
Sbjct: 266 MKTETDYIKGVGLAVGTAGSAVIFAGVTVIIAVCGLSLVGIDFLSVMGFASAISVAFAVF 325

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           S++ +   ++   ++     
Sbjct: 326 SALTLLPALISIFHNQIKPK 345


>gi|325923421|ref|ZP_08185083.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
 gi|325546095|gb|EGD17287.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
          Length = 1028

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 90/646 (13%), Positives = 187/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATADGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +      D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AIRDDFPEDLQRFHIFKWSSSDEPVLKVRLASQTDLTGAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S      N S           R      
Sbjct: 172 AKVEISGAPPNEVEIAIAPDRLTAHDLSLNDLSERLSKLNFSVSAGQIDDNGQRIRVQPI 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + D  E+  + L                        A+         +      +  G
Sbjct: 232 GELRDLQELRELVL-----------------------NAKGLRLGDIAEVRLNPTRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +     + A      +RA      + +    N   A   S 
Sbjct: 269 RRLDGRPAIGLDVYKERSANLVDVSKAALKEVEGIRAEPAMRDVQVKVIDNQGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 AELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPGQPQLAALLGTRSVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     + S            
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTSEHGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G D      +            +
Sbjct: 509 AKVLAWTLAHRGWSVAGIVLVSAISLVPMKLTKVDMFGGDGGNEAFIQYQWKGSYTHEQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +N               G S   T     VK 
Sbjct: 569 GEEIGRVENFLEANRNKYHITQVYSWFSEVEGSSTTVTFDASKVKD 614



 Score = 82.8 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 85/237 (35%), Gaps = 11/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLSTIQNTE 655
            +L  +QI   + Q     +   + ++    + V        ++K +     P       +
Sbjct: 768  SLVDVQIRPAATQIGRTNRQTTLTIKANLAEKVTVPEARAAMEKPLKAMSFPAGYSYTFD 827

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E   + +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 828  GGDYQNDGEATGQMVFNLVIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 887

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +     L    +     + +   E L   + 
Sbjct: 888  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN---NLRRRGMGRTQALIEGSRERLRPIMM 944

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T   A ++++P+          G      A  +A G+  +   S+     I   + D
Sbjct: 945  TMGTAILAMVPISLTSTTMFSDGPPYFPMARAIAGGLAFSTVVSLLFLPTIYAILDD 1001



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +    +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 DVSKAALKEVEGIRAEPAMRDVQVKVIDNQGKAVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPGQPQLA-----ALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|21284202|ref|NP_647290.1| hypothetical protein MW2473 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487331|ref|YP_044552.1| putative transport protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|297209622|ref|ZP_06926019.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300910635|ref|ZP_07128086.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus TCH70]
 gi|21205645|dbj|BAB96338.1| MW2473 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245774|emb|CAG44254.1| putative transport protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296885761|gb|EFH24697.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300888158|gb|EFK83352.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus TCH70]
          Length = 829

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/592 (12%), Positives = 197/592 (33%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG-------- 577
           N                  A      I ++ +   +  +     + G+            
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 578 --------------GIQLGVLANRP---------VDLSVVRSNLESLQIGDISFQNFDGE 614
                          + + V   +            +     + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  +  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKKGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGIVQPNITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYIKGIGLAIGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKRIKVNK 338


>gi|332288481|ref|YP_004419333.1| multidrug efflux protein [Gallibacterium anatis UMN179]
 gi|330431377|gb|AEC16436.1| multidrug efflux protein [Gallibacterium anatis UMN179]
          Length = 1029

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 64/513 (12%), Positives = 153/513 (29%), Gaps = 40/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  +GL       + +  +  +P  +    I+                
Sbjct: 9   KRPVLAISISLLIVILGL-----QAISKLAVREYPK-LVTTVIN--------ITTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + V  F+    +E  +          S  Q  + IT+    +         V   +  
Sbjct: 55  DAELVEAFITSKIEEAVAQADNIDYMSSSSAQGSSSITVKMKLNADPNGALADVLAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  D +   + ++T     I+       ++ S  +  +  I R    Q        
Sbjct: 115 VRSQLPSDIEDPTITSSTGGS-GIMYIGFTSKELNSSQV--TDYIERVVKPQFFTVSGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L     P ++  L  + + +       N           ++   +  + 
Sbjct: 172 KVEVFGGASYALRIWLQPEKMAALGLSASDVMGALSQNNVQTAAGSANSYYVTYKNKVET 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   E+                     ++                 +           
Sbjct: 232 TTKSADEL--------------------RNLVLFSKNGNIVKLGDIAKVDMDKESDNARA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          A  +    ++    L   ++        + V      A   S + 
Sbjct: 272 AANGENAVVLGIEPAADANPLTVVKNIYPLYNSIKESLPNSIESRVLYDKTIAINDSINE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL+V+ M +   +  ++   +I +++I  + LL     ++ L ++  ++
Sbjct: 332 VIHTIFEATVIVLVVITMFLGSFRAMIIPVVTIPISLIGVIMLLQFFDFSINLMTLLALI 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ ++ F +  +G     + +    I        +   G
Sbjct: 392 LAIGLVVDDAIVVLENVDRHIKEGETPFRAAIIGTREIATPVISMTIALCAVYSPMALMG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMM 511
              G   + FA+T+  ++ IS   A+++   M 
Sbjct: 452 GITGTLFKEFALTLAGAVFISGIIALTLSPMMC 484



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 75/226 (33%), Gaps = 16/226 (7%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                +  +              E     +         +       +    L    ++ V
Sbjct: 796  SSAVISAIPMPTSSVGDAVEWFEGEGASLLPSNYSYDFKGEARQFVQEGNALAVTFVLAV 855

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDI---TKTLGFFALFGI---EFNLTAVAAV 726
            +I    + + + I+F+     L  + ++ L I      L   +LFGI     N+ +   +
Sbjct: 856  LI----IFLVLSIQFESMRDPLVIMISVPLAISGALLMLNILSLFGIAGTTLNIYSEVGL 911

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TL+G      +++ +  ++   L+       + I  +    L   + T+ A    ++P+
Sbjct: 912  ITLVGLITKHGILMCEVAKEQQLLF--GKDRIEAISYAAKVRLRPILMTTAAMIAGLIPL 969

Query: 787  -AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAK 829
                G   +  F+I +    G+ +    ++F+   I   +      
Sbjct: 970  LYASGAGAVSRFSIGIVIVSGLAIGTLFTLFVLPVIYTLVASKHKP 1015



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 71/187 (37%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           +   +K+ +   +    + +  I       E+I       +I  + + +++     +   
Sbjct: 301 LYNSIKESLPNSIESRVLYDKTIAINDSINEVIHTIFEATVIVLVVITMFLG---SFRAM 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  + T+ + +   +     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 IIPVVTIPISLIGVIMLLQFFDFSINLMTLLALILAIGLVVDDAIVVLENV---DRHIKE 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGTREIATPVISMTIALCAVYSPMALMGGITGTLFKEFALTLAGAVFISGI 474

Query: 811 SSIFIAA 817
            ++ ++ 
Sbjct: 475 IALTLSP 481


>gi|329730321|gb|EGG66711.1| MMPL family protein [Staphylococcus aureus subsp. aureus 21193]
          Length = 830

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/593 (12%), Positives = 190/593 (32%), Gaps = 60/593 (10%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  +  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKKGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF-----------ALFGIEF 718
           +   +I  +A  + + +       L A+   +L +  TLGF             LFGIE 
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGCFMKGLFGIET 581

Query: 719 NLTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
               +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V
Sbjct: 582 TGPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIV 638

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AAALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 691



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGIVQPNITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYIKGIGLAIGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKRIKVNK 338


>gi|78044509|ref|YP_360344.1| preprotein translocase subunit SecD [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996624|gb|ABB15523.1| protein-export membrane protein SecD [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 408

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 34/177 (19%), Positives = 80/177 (45%), Gaps = 5/177 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + +R+ +   II  IA+ +++ + +++     A   LIL  T  LG        
Sbjct: 233 GPTLGADSLRRSVRASIIGVIAIFVFMILYYRFP-GFIADFALILYATIVLGVMIALKAT 291

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  +G +V+  +++++R+++ +++     + R  ID            ++ 
Sbjct: 292 LTLPGIAGFVLSMGMAVDANILIFERLKEELRM---GKTLRSAIDAGFKRAFLTVFDSNA 348

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR-AKNARI 833
              I+ + +   G   I  FA+ ++ GI+ +  ++I     +L    D +  KN ++
Sbjct: 349 TTLIAAVILYFLGTGPIRGFAVTLSIGIIASMFTAITFTRWLLFLAADSKVVKNPKL 405



 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 138/380 (36%), Positives = 222/380 (58%), Gaps = 26/380 (6%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           +     +     V    ++ ++ II  R++++GISE  IQ+ G  RI++++ G ++P   
Sbjct: 49  VVFQAKELPGSPVNDKTMQSTISIIETRVNELGISEPIIQKQGKDRIIVEIAGYKNPEEA 108

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            + L   A + F                             E +V +SG  L  A    D
Sbjct: 109 VRTLIKPAVLEF--------------------------KSPEGEVIVSGKDLRDAIEAKD 142

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
           P T    VD++F+  GA++F + T  N+ + L + LDG++L  PVI + I +GKA+I+G 
Sbjct: 143 PNTGLAEVDLTFNAEGAKKFADFTTKNVNRNLGIYLDGKLLQNPVIKEPITNGKARITGY 202

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
             +E A  +A +LR+G+LP+KL I+E++ VG  LG+DS+ +   A + G++ I +FMI+ 
Sbjct: 203 KDLEEAHRIAVLLRSGALPLKLEILEKKVVGPTLGADSLRRSVRASIIGVIAIFVFMILY 262

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G +ADF++ L   + L ++  L ATLTLP IAG VL +G+AVD+NIL+ ER++EE 
Sbjct: 263 YRFPGFIADFALILYATIVLGVMIALKATLTLPGIAGFVLSMGMAVDANILIFERLKEEL 322

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R  +++  ++D GF RA+ T+FDSN T LIA V+L+F G G +RGFA+T+ + I+ SMFT
Sbjct: 323 RMGKTLRSAIDAGFKRAFLTVFDSNATTLIAAVILYFLGTGPIRGFAVTLSIGIIASMFT 382

Query: 503 AISIVRAMMIFIIRYKKMKS 522
           AI+  R ++      K +K+
Sbjct: 383 AITFTRWLLFLAADSKVVKN 402



 Score = 65.9 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/423 (12%), Positives = 127/423 (30%), Gaps = 32/423 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR   + +    +I  +  ++    FL    +            +LGLDL+GG H+V + 
Sbjct: 1   MRLGKFTLFSGVLILIL--ILGWYTFLGFGAVKPL-----VKYTTLGLDLQGGVHVVFQA 53

Query: 61  D---EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVT 116
                    +  +Q     + + + + GI    +++   ++I +  A  +  E     V 
Sbjct: 54  KELPGSPVNDKTMQSTISIIETRVNELGISEPIIQKQGKDRIIVEIAGYKNPEEA---VR 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             ++    +    P+  ++V+  +   +I     N           +    +        
Sbjct: 111 TLIKPAVLEF-KSPEGEVIVSGKDLRDAIEAKDPNTGLAEVDLTFNAEGAKKFADFTTKN 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
               +      ++L     ++  +  +  +     +       +        G   L+  
Sbjct: 170 VNRNLGIYLDGKLLQNPVIKEPITNGKARITGYKDLEEA----HRIAVLLRSGALPLKLE 225

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              + +V       G  L   +     +     V   F  M     F     +    L  
Sbjct: 226 ILEKKVV-------GPTLGADSLRRSVRASIIGVIAIFVFMILYYRFPGFIADFALILYA 278

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
            +   V+ A      +P     +        A IL        L +   +    + G   
Sbjct: 279 TIVLGVMIALKATLTLPGIAGFVLSMGMAVDANILIFERLKEELRMGKTLRSAIDAGFKR 338

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
              +++      +   V+      + +   G +  F++ L++ +  ++ + +  T  L  
Sbjct: 339 AFLTVFDSNATTLIAAVI------LYFLGTGPIRGFAVTLSIGIIASMFTAITFTRWLLF 392

Query: 417 IAG 419
           +A 
Sbjct: 393 LAA 395


>gi|154685166|ref|YP_001420327.1| SwrC [Bacillus amyloliquefaciens FZB42]
 gi|154351017|gb|ABS73096.1| SwrC [Bacillus amyloliquefaciens FZB42]
          Length = 1047

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/698 (10%), Positives = 196/698 (28%), Gaps = 52/698 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + V L ++I  +  L A  N   +S+ D     +               +       
Sbjct: 10  KNKFAVWLMTIIVTVAGLYAGMNMKQESIPDVNMPYLS-------------VNTTYPGAA 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    L+   +   +  +  + + + +  ++  +    +V   L  V
Sbjct: 57  PSQVADDVTKPIEQAVQNLEGVSVVTSTSSENVSSVMIEYDYNKDMDKAKTEVAEALDSV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D KK  +   +     I+    ++    S   + +  +    + ++   +    
Sbjct: 117 --SLPDDAKKPDISRYSLNSFPILT--LSVTSGKSSLEDLTKNVENTLVPKLEGIQGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S +   Q+       ++++       +       + +    ++       S      
Sbjct: 173 VQVSGQQEEQVEFSFKDKKMKEYGLDEDTVKKVIQGSDVNTPLGLYTFGNKEKSVVVNGD 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG----------- 291
           +    ++  + +   +++            S  +  A +  + +                
Sbjct: 233 ITAIKDLKDMRIPVTSSSAAQGQAGGAGAASAADAQAMQQAQQSASAGVPTVKLSDIADI 292

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K +                         +     +         +               
Sbjct: 293 KDVKKAESISRTNGKDSIGINIVKANDANTVEVADAIKDELNQYKKDH-KGFKYSSTLDM 351

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S           A   ++++ + +   K  +++  SI L++++ L +L+ L  T
Sbjct: 352 AEPITESVDTMLSKAIFGAIFAVVIILLFLRDIKSTMISIVSIPLSLLIALLVLNQLDVT 411

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTIFDSNI 468
           L + ++  + + IG  VD +I+V E I    R           +       +  I  S I
Sbjct: 412 LNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKQLVREATKEMFKPIMSSTI 471

Query: 469 TALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMM-IFIIRYKKMKSID 524
             +   + L   GG        FA+T+  ++  S+  +I++V  +      +      + 
Sbjct: 472 VTIAVFLPLAMVGGQIGELFMPFALTIVFALAASLLISITLVPMLAHSLFKKSLTGAPVK 531

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSI----------------CSICLLFTHG 568
                   L      +     R   +   I   +                 +        
Sbjct: 532 AKEHKPGRLANFYKKVLHWSLRHKWITSIIAVLMLVGSLFLVPLIGASYLPAQADKTMQL 591

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                  +   +    A +  D+ + R +++++Q    S     G  N  +       D+
Sbjct: 592 TYTPEPGETKSEAEKAAQKAEDMLLKRKHVDTVQYSLGSQSPLGGSSNGALFYVKYEDDT 651

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
               +  + V K+I +       ++        + EL 
Sbjct: 652 PDFDKEKDNVLKEIKKTSSRGEWKSQNFSSSGNNNELT 689



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/242 (14%), Positives = 88/242 (36%), Gaps = 4/242 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS +    +  +   IS  N        +              + + + +   +    
Sbjct: 284 VKLSDIADIKDVKKAESISRTNGKDSIGINIVKANDANTVEVADAIKDELNQYKKDHKGF 343

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                 ++  P I+  +       +  +  A++I +         + +I ++ L +   L
Sbjct: 344 KYSSTLDMAEP-ITESVDTMLSKAIFGAIFAVVIILLFLRDIKSTMISIVSIPLSLLIAL 402

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                  +  N+  + A+   IG  V+D +VV + + + M+L    +  + L+ ++  E 
Sbjct: 403 LVLNQLDVTLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKQLVREATKEM 462

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               + +++      LP+A+ GG +      FA+ + F +  +   SI +   +   ++ 
Sbjct: 463 FKPIMSSTIVTIAVFLPLAMVGGQIGELFMPFALTIVFALAASLLISITLVPMLAHSLFK 522

Query: 826 WR 827
             
Sbjct: 523 KS 524



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 97/262 (37%), Gaps = 8/262 (3%)

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
             +K   +L            V+    +      +          +         S   T+
Sbjct: 783  QYKSVKELEDKTITSPAGQEVKIGDVAKVKNGTTSDTISKRDGKVYADVTATVTSDNVTK 842

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
            V   V+KK+ ++     +            +   K  + ++ +   + + + I F    A
Sbjct: 843  VSSAVQKKVDKLDHPDNVSIDTGGVSADIADSFTKLGLAMLAAIAIVYLVLVITFGGALA 902

Query: 694  LGAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              AI  +L   +   L    + G   +L A+  +L LIG  V + +V+ DR+   +    
Sbjct: 903  PFAILFSLPFTVIGALAGLYVSGETISLNAMIGMLMLIGIVVTNAIVLIDRV---IHKEA 959

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVA 808
              +S R+ + ++ +  L   + T++A   ++LP+A+    G  VI     + +  G++ +
Sbjct: 960  EGLSTREALLEAGSTRLRPILMTAIATIGALLPLALGFEGGSQVISKGLGVTVIGGLISS 1019

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++ I   +   +  +R K 
Sbjct: 1020 TLLTLLIVPIVYEVLAKFRKKK 1041


>gi|253734014|ref|ZP_04868179.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728013|gb|EES96742.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus TCH130]
          Length = 822

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/592 (12%), Positives = 190/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 95  KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 154

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 155 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 214

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 215 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVIF 274

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 275 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 334

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 335 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 394

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 395 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 454

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  +  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 455 YALMVVIPKKGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 514

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 515 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 574

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 575 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 631

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 632 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 683



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 72  TKDDGIVQPNITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 131

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 132 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 191

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 192 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 248

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 249 QVMKTETDYIKGIGLAIGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 308

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 309 VFSALTLLPALISIFHKRIKVNK 331


>gi|190574000|ref|YP_001971845.1| putative transmembrane ACR-type efflux transport protein
           [Stenotrophomonas maltophilia K279a]
 gi|190011922|emb|CAQ45543.1| putative transmembrane ACR-type efflux transport protein
           [Stenotrophomonas maltophilia K279a]
          Length = 1028

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/667 (12%), Positives = 201/667 (30%), Gaps = 57/667 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  IGL+ +      +  L+  P                   +     
Sbjct: 9   RRPVTTIMCFVSLVVIGLIASF-----RLPLEALPDISAPFLF---------VQIPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             + V   +    +E  + +        S       I + F+D  R     A      + 
Sbjct: 55  TPEEVERTIIRPVEESLATMTGIKRMRSSATSEAALIFIEFSDWDRDIAIAASDARERID 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S L  D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AIRSDLPDDLQRYNVFKWSSSDQPVLKVRLASTTDLTTAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +     ++    DP+RL     +  ++S      N S            D +G +
Sbjct: 172 ARVDITGAPPNEVEIAIDPNRLNAHGLSINELSDRLRTLNFSISAGQI------DDNGQR 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+   EI+ +                   +    + A+        ++    A +  G
Sbjct: 226 VRVQPVGEITDLQE-----------------MRDLVINAKGLRLGDIADVRLKPARMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +       A      +RA +    + I    N   A   S 
Sbjct: 269 RRLDGNPAVGLDIFKERSANLVEVSRAALAEVEAIRAEASMRDVQIKVIDNQGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                  A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 LELAEAGAVGLILSITVLFFFLRHWPSTLMVTLAIPICFTITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPGQPRLASIIGTRNVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLSR 530
           F         +   AIT+ +S+L S   A+S++  +   +   K + S    I       
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAVSLIPMLSARMATPKLVHSQTGLIARLQRRY 508

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH------GLNYGIDFKGGIQLGVL 584
             L+   +  +        + + +      +  +          +  G  +KG      +
Sbjct: 509 ARLLDWSLHHRGWSLLGIVLVVLVSLVPMKLTKVDMFGGDGGKDIFIGYMWKGAYTYRQM 568

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +     +                +  +  ++     +      +     + E ++K + +
Sbjct: 569 SEEVARVENWIDANRERLHVKQVYSWYSEQEGSSTVVTLDEKYAKDIKALQEELRKGLPK 628

Query: 645 IVPLSTI 651
                  
Sbjct: 629 SARTDYF 635



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 94/245 (38%), Gaps = 11/245 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +L ++ +G  + Q     +   + ++    + V      + ++  +  +   +    T  
Sbjct: 770  SLVTVDVGSSATQIGRTNRQTTLTIKANLAEKVTAPDGRKAMESVLKPMNFPAGYGFTFD 829

Query: 657  VGPK-ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
             G      E +++ +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 830  GGDYGNDDEAMQQMVFNLLIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 889

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +  N++      +    + +   E L   + 
Sbjct: 890  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN-NLRRGGMGRT--QALVEGSRERLRPIMM 946

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            T   A ++++P+          G      A  +A G+  +   S+     I   + D R 
Sbjct: 947  TMGTAILAMVPISLTNTQMFGNGPEYAPMARAIAGGLAFSTVVSLLFLPTIYAVLDDLRN 1006

Query: 829  KNARI 833
               R+
Sbjct: 1007 AVTRL 1011



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 92/287 (32%), Gaps = 9/287 (3%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R R     IS      +   +    +    D +    L + A       +    L+  ++
Sbjct: 206 RLRTLNFSISAGQIDDNGQRVRVQPVGEITDLQEMRDLVINAKGLRLGDIADVRLKPARM 265

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP-LSTIQNTEIVGPKIS 662
                 + +      +  +            L  V+    E       I+  +  G  ++
Sbjct: 266 NYGRRLDGNPAVGLDIFKERSANLVEVSRAALAEVEAIRAEASMRDVQIKVIDNQGKAVT 325

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             L+     G +   +++ +  +    W   L     + +  T TLGF    G+  N+  
Sbjct: 326 SSLLELAEAGAVGLILSITVLFFFLRHWPSTLMVTLAIPICFTITLGFMYFVGVTLNILT 385

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF-- 780
           +  +L  +G  V++ VVV + + +  +          +I      T   ++  S      
Sbjct: 386 MMGLLLAVGMLVDNAVVVVESIYQERERMPGQPRLASII-----GTRNVAIALSAGTLCH 440

Query: 781 -ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I  +P      + I  F   +A  I V+  +S  +A  ++  +   
Sbjct: 441 CIVFVPNLFGETNNISIFMAQIAITISVSLLASWLVAVSLIPMLSAR 487


>gi|296447343|ref|ZP_06889270.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
 gi|296255122|gb|EFH02222.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
          Length = 1030

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 63/527 (11%), Positives = 150/527 (28%), Gaps = 40/527 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I  IG +      +       FP+         G D            
Sbjct: 9   RRPVGTTLLATAIFLIGAVAYFFLPVASVPSVDFPAIA-VTAGRSGAD------------ 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   + +        S       I + F   R  +  A  V   +  
Sbjct: 56  -PETMAATVAAPLEHRLARIASVNQLTSSSSLGSTSIFVLFDIDRNIDAAARDVQAAINA 114

Query: 122 VNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             + +  D           +    I++       + + A+  +         ++      
Sbjct: 115 AATDIPGDLPILPYFRKFNQSSTPIMVLALTSKTLPTSAVYDA--ADSVLAQRLAQIPGI 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +      +  + DP+RL  +  +  +++   V  N +                  
Sbjct: 173 GEVRVAGAEQPAIRIQVDPARLATMGLSMDRVASAVVSANVTAPVGALE----------- 221

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        +    T +    I                 + +     L  
Sbjct: 222 ---------GGSTAMTLEVDDQLSTPEDYRKIVVASTNGAVVKLGDIATVERGSRNRLAA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      + + +A  +    ++    L   L A         +          S +
Sbjct: 273 GWFNGQPAVLLVITKQANANVIAAVDRVKELLPQLEAWMPSGIDVAIMSDRTQTIRASVA 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  +  GLV+ V+F+ +        A  ++ L+++   A +   G +    S+  +
Sbjct: 333 EIQRTMVVTVGLVMAVVFVFLRRATPTFAAGVTVPLSLVGACAAMWAAGFSANNFSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G  VD  I++ E I     +      +   G  +   T+   +++ +   V L F 
Sbjct: 393 TIAVGFVVDDAIVMIEAIETNVERGMGRLEAALAGARQIGFTVVSISLSLIAVFVPLLFM 452

Query: 481 GGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           GG      R F+ T+  +I+IS   ++++   +   +    +  +  
Sbjct: 453 GGIMGRLLREFSFTLVFAIVISTVVSLTVTPMICARMPSRPRPATRF 499



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/191 (14%), Positives = 72/191 (37%), Gaps = 9/191 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             +L  ++  +   + ++ + +          E+ R  +V V +    + +++    +  
Sbjct: 301 KELLPQLEAWMPSGIDVAIMSDRTQTIRASVAEIQRTMVVTVGLVMAVVFVFL---RRAT 357

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
               A  T+ L +          G   N  ++ A+   +G+ V+D +V+ + +  N+   
Sbjct: 358 PTFAAGVTVPLSLVGACAAMWAAGFSANNFSLMALTIAVGFVVDDAIVMIEAIETNV--- 414

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
              +   +       +     V  S++     +P+   GG +   +  F+  + F IV++
Sbjct: 415 ERGMGRLEAALAGARQIGFTVVSISLSLIAVFVPLLFMGGIMGRLLREFSFTLVFAIVIS 474

Query: 809 ASSSIFIAAPI 819
              S+ +   I
Sbjct: 475 TVVSLTVTPMI 485



 Score = 38.1 bits (86), Expect = 6.6,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 9/158 (5%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            +I   +       +  I+TL       L     FG EF + A+  +L LIG    + +++
Sbjct: 868  IILGVLYESLVHPVTIISTLPSAGLGALLALEAFGAEFTVMALIGILLLIGIVKKNGIML 927

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW----GGSVIG 795
             D            +S  D   ++  E     + T++AA +    +   +    G  +  
Sbjct: 928  VD--FALQAERERGLSPHDAALEAAVERFRPILMTTLAAML--GALPLAFAAGVGAEMRR 983

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               I +  G++++ + +++    I L +   + + A +
Sbjct: 984  PLGITIVGGLLLSQAMTLYTTPVIYLLMSKLKRRRAAV 1021


>gi|33594667|ref|NP_882311.1| AcrB/AcrD/AcrF family protein [Bordetella pertussis Tohama I]
 gi|33598462|ref|NP_886105.1| AcrB/AcrD/AcrF family protein [Bordetella parapertussis 12822]
 gi|33603404|ref|NP_890964.1| AcrB/AcrD/AcrF family protein [Bordetella bronchiseptica RB50]
 gi|33564743|emb|CAE44068.1| AcrB/AcrD/AcrF family protein [Bordetella pertussis Tohama I]
 gi|33574591|emb|CAE39240.1| AcrB/AcrD/AcrF family protein [Bordetella parapertussis]
 gi|33577528|emb|CAE34793.1| AcrB/AcrD/AcrF family protein [Bordetella bronchiseptica RB50]
 gi|332384078|gb|AEE68925.1| AcrB/AcrD/AcrF family protein [Bordetella pertussis CS]
          Length = 1035

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/584 (11%), Positives = 162/584 (27%), Gaps = 39/584 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GLL           +   P                     L    
Sbjct: 10  RPVATTLLCLGVVLAGLLA-----YRLLPVAPLPQVDIPTI---------SVSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +           Q   +ITL F  SR  +  A  V   +   
Sbjct: 56  PETMASSVATPLERSLGSIAGVTEMTSRSSQGSTRITLQFDLSRDVDGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    + N          + +++   +        +           ++       +
Sbjct: 116 RSLLPTSLRSNPTYHKANPSAAPIMT-LAMTSATLGQGKLYDLASTIVAQKLAQVNGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +     P  L     +  ++       N ++   M               
Sbjct: 175 VTVGGSSLPAVRVNLIPGALANRGVSLDEVRQALSSANANRPKGMVE------------- 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +  +     A+      +    +                ++   +  +     
Sbjct: 222 -------NDQYHWQVMASDQLDRAEQYRPLIVAWRDGAAVRLSDVASVEDSVEDLYQTGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +A  +   T++        L A         V +    +   S    
Sbjct: 275 YNDRKAILMIVRRQADANIIETVDAVRAQLPQLAALLPGDVDLTVAQDRTPSIRASLHEA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I  GLV++V+ + +   +   +   ++ +++I T  ++ L G TL   S+  +++
Sbjct: 335 ELTLVIAVGLVVLVVLLFLRRLRAAFIPSVAVPVSLIGTFCVMYLCGYTLNTISLMALIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  +   +   G      T+   +++ +   + +   G 
Sbjct: 395 ATGFVVDDAIVVLENIMRHIERGATPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDCI 538
             G   R FA+T+  SIL+S+  ++++   M    +                +  +   +
Sbjct: 455 VAGRLFREFAVTLSASILVSLVVSLTLTPMMCARLLRAEPAAPRPPGRIGRLWTRLYGGM 514

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              + R+  W +  + L  +     +  +   Y +  KG     
Sbjct: 515 QGGYERSLGWALAHARLMMLILAATIGLNVYLYMVVPKGFFPQQ 558



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 49/123 (39%), Gaps = 6/123 (4%)

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + + +  T     L G   N  ++ A++   G+ V+D +VV + +   M+      + 
Sbjct: 364 VAVPVSLIGTFCVMYLCGYTLNTISLMALIVATGFVVDDAIVVLENI---MRHIERGATP 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIF 814
                +   E     +  S++     +P+ + GG        FA+ ++  I+V+   S+ 
Sbjct: 421 MRAALRGSREVGFTVLSMSLSLVAVFIPILLMGGVAGRLFREFAVTLSASILVSLVVSLT 480

Query: 815 IAA 817
           +  
Sbjct: 481 LTP 483



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 66/162 (40%), Gaps = 6/162 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
               ++ + + M I + I ++     L  ++TL       L    L G EF L A+  V  
Sbjct: 858  PWLILAALVTMYIVLGILYESLVHPLTILSTLPSAGIGALLALMLLGHEFTLIALIGVFL 917

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ D   +        +  R  I ++        + T+MAA    LP+ +
Sbjct: 918  LIGIVKKNAIMMVDFALE--AERRDGLDARAAILRACLTRFRPIMMTTMAAIFGALPLML 975

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                G  +     I +  G+V++   +++    + L++  +R
Sbjct: 976  ASGPGVEMRRPLGITIVGGLVLSQILTLYTTPVVYLYLDRFR 1017


>gi|312149313|gb|ADQ29384.1| acriflavine resistance protein [Borrelia burgdorferi N40]
          Length = 1071

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 79/514 (15%), Positives = 164/514 (31%), Gaps = 33/514 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +   H V     
Sbjct: 9   KPITMLILFSLLLMISLYT-----FSRLKVDLLPGIDIP---------QISIHTVYPGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K          +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSVSSKESSTVSLEFYHGTDLDLVLNEIRDALELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRISSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  VE+SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVEVSGKFKSIEEIGNVVIAYKIPDISSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +          S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVMNEIEKLKLSMPKDMKLEIASDGTDFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + ++LT  L+     +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIVLTFCLMYFANISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAM 510
                G   + F  T+ +S+ +S+  AI +V  +
Sbjct: 462 ELGVYGDFFKDFTFTIVISLGVSLLVAIFLVPVL 495



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 86/235 (36%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ + +  + +   +   +   + L          T+V   V   I   VP       +
Sbjct: 799  SSIATFEKTNKAESIYRENQALTIYLNAGISPDDNLTQVTAKVVDFINNKVPHKEGITLK 858

Query: 656  IVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            + G       I     + ++++ I +   +  +F+ +      I T+ L     +    L
Sbjct: 859  VEGEYNEFSNIMNQFKIIIMMAVIVVFGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFL 918

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++ A   +L L+G  VN  +V+ D       L       R+ I +S    L   +
Sbjct: 919  AGEKLSIFAAIGMLMLVGVVVNTGIVLVD---YTGLLIKRGFGLREAIIESCRSRLRPIL 975

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +S+ + I ++PMA     G  ++   A     G+  +   ++F    +     +
Sbjct: 976  MSSLTSIIGLIPMAFSSGSGNELLKPIAFTFIGGMTASTFLTLFFIPMLFEIFSN 1030



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 79/263 (30%), Gaps = 19/263 (7%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +      ++     +L      +                +    +S+A + V+    
Sbjct: 258 PIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS------VQKRSDANSIAVSNVVMNEI 311

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAIT 698
           +K+   +P          G    +  I   +      + +A+ +  +    +   +    
Sbjct: 312 EKLKLSMPKDMKLEIASDGTDFIKASISTVVNSAYFGAMLAIFVIFFFLRSFRATIIIGI 371

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + I  T        I  N+ ++A +   IG  V+  +VV D +    K         
Sbjct: 372 SIPIAIVLTFCLMYFANISLNIMSLAGLALGIGMVVDCSIVVIDNI---YKYRQKGAKLI 428

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSS 812
                   E +     ++  +     P  ++       G     F   +   + V+   +
Sbjct: 429 SSSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVYGDFFKDFTFTIVISLGVSLLVA 488

Query: 813 IFIAAPI---LLFIYDWRAKNAR 832
           IF+   +    + +Y    KN +
Sbjct: 489 IFLVPVLSSHYVGLYTSFQKNIK 511


>gi|227496219|ref|ZP_03926518.1| protein-export membrane protein SecD [Actinomyces urogenitalis DSM
           15434]
 gi|226834250|gb|EEH66633.1| protein-export membrane protein SecD [Actinomyces urogenitalis DSM
           15434]
          Length = 657

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 116/649 (17%), Positives = 222/649 (34%), Gaps = 72/649 (11%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DED 63
             +L  ++       AL            P         L LDL GG+ ++L     D  
Sbjct: 11  RRLLVLLVVIAIGYAALALGAATHRTSMTPG--------LALDLEGGTQIILTPTTTDGS 62

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL---- 119
              +  +Q   + +R  +   G+    + +   +  +     +  +   + V        
Sbjct: 63  TITDEDVQQAIEIIRQRVDASGVAEAQISRQGGQNIVVALPGQPSQETLELVRTSAVLYF 122

Query: 120 ---------------QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM 164
                          Q  N  L                 +   +     +       Q+ 
Sbjct: 123 RPVIRIIQGSATAIAQAQNQYLAKAAASASASPQASDAATQDATSAPASEPAQEPTPQAT 182

Query: 165 EIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD------PSRLRQLLGTTAKMSFHKVL 218
            +     +Q+  + + + + G+           D       +            +    L
Sbjct: 183 AVPTVTAEQVAQTYADVNQDGTISSDPLPATSDDHSSDEWITEQMIYDAYMTDCTAADNL 242

Query: 219 PNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-----ATANFDPKTHKPVVDIS 273
              S+      +   +D  G  Y++    +I+G  ++       T +    T+K VV + 
Sbjct: 243 TGVSQDPSKAVISCAKDGSGATYIL-GPADIAGTDISRASSGLETTSQGTTTNKWVVSLE 301

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV-------------------------- 307
           FD+ G   F  V++  +    A        T                             
Sbjct: 302 FDKKGTDEFAAVSKRLLAYRDAAAASASTTTQTGSTDSQKARFAIVLDGLTLMASGFSSD 361

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I  G+ QISG+FT   A  LA  L  GSLP+   +  E+ + A LG + +  G  A
Sbjct: 362 VTTPITDGRVQISGSFTQAQANTLANQLSFGSLPLTFTVQSEQQISATLGIEQLRHGLIA 421

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIAGIVLG 423
            + G +LI++++   Y    +VA  S+     +T   ++LL   +    +L  +AG+++ 
Sbjct: 422 GLVGFLLIIVYLAWQYRGLAVVAVTSLVAAAGVTYLAIALLSWAMGYRLSLAGVAGLIIS 481

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           IG+ +DS I+  ERIR+E R  +++  ++D G+S A  TI  S+   L+A VVL+F   G
Sbjct: 482 IGITMDSFIIYFERIRDEVRHGRTLVAAVDEGWSHARQTIIVSDAVNLLAAVVLYFLAVG 541

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
            V+GFA T+G++ ++ +   +     MM++I+R++               +       + 
Sbjct: 542 GVQGFAFTLGVTTVVDLAIIVFFTHPMMVWILRFRFFGQGHRWSGLDPEHLGARSLAAYG 601

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           + R   +                       +          A  P   S
Sbjct: 602 KGRQSAIDSVTSSLARRKAEARAQARQAEDEPSPEHDQEADAVDPGTTS 650



 Score =  110 bits (274), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 87/210 (41%), Gaps = 8/210 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G            +     +    T+Q+ + +   +  E +R G++  ++  + ++
Sbjct: 371 VQISGSFTQAQANTLANQLSFGSLPLTFTVQSEQQISATLGIEQLRHGLIAGLVGFLLII 430

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAVAAVLTLIGYSVNDK 737
           +Y+  +++   A+ A+T+L+     T    AL     G   +L  VA ++  IG +++  
Sbjct: 431 VYLAWQYR-GLAVVAVTSLVAAAGVTYLAIALLSWAMGYRLSLAGVAGLIISIGITMDSF 489

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           ++ ++R+R  ++      +    +D+  +      + +     ++ + +       +  F
Sbjct: 490 IIYFERIRDEVR---HGRTLVAAVDEGWSHARQTIIVSDAVNLLAAVVLYFLAVGGVQGF 546

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           A  +    VV  +  +F   P++++I  +R
Sbjct: 547 AFTLGVTTVVDLAIIVFFTHPMMVWILRFR 576


>gi|254438918|ref|ZP_05052412.1| RND transporter, HAE1/HME family, permease protein [Octadecabacter
           antarcticus 307]
 gi|198254364|gb|EDY78678.1| RND transporter, HAE1/HME family, permease protein [Octadecabacter
           antarcticus 307]
          Length = 1053

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 82/558 (14%), Positives = 175/558 (31%), Gaps = 30/558 (5%)

Query: 39  MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ----MYSDELRSFLKKEGIGVFSMRQI 94
           + +  I L  D+R    +V++          ++       +E    L+   I     R  
Sbjct: 29  LSRIPIQLAPDVRKPI-VVVQTSWPGAAPSEVEREIVNLQEETLRGLEGLEIMTSRSRTG 87

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
           +  +TL FA           V+  L  V        +  L  +  +      +     + 
Sbjct: 88  EASVTLEFAVGTDMSQSLLLVSNRLDRVGGYPAEASQPTLNTSGADDSPIAWVLMTAKEG 147

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
                      +     D++   E             +L    DP RL +   T  ++  
Sbjct: 148 NTRAMPTYGDFLEDVIKDRVERIEGVSAVNVFGGTQRELQVIVDPQRLSRYGLTVPEVVR 207

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
                N S           R     +  +  +  I  + L    A               
Sbjct: 208 VLRSENISTSAGDVDEGKRRYVVRTESSLNTEDAIRNVVLRSDVA--------------- 252

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
              G  R   +    +                         ++  +    +E   ++   
Sbjct: 253 -NGGVGRVRVMDVAEVSFAYQEATSRLRFEGEPGLAFNVVRESGANVISVMEEFRVVLEE 311

Query: 335 LRAGSLPIKLNIVE--ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
           LR G L       E          G+  +      I A L   +L + +   +  ++   
Sbjct: 312 LRVGPLNDVGLNAEQVYDETIYIQGAIDLVIQNIWIGAALAAFILMLFLRSTRATIIVSL 371

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           +I ++++ T  +++L G TL + S+AGI   IG+ VD+ I+V E I        S   + 
Sbjct: 372 AIPVSIVATFVVMALTGRTLNVISLAGIAFAIGMIVDAAIVVLENIFRLREAGYSRREAA 431

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRA 509
            +G  + +  I  S +T ++  + +       G   R  A+ + +S+++S+  A++++ A
Sbjct: 432 YLGAKQVWGAILVSALTTVLVFIPILIMQLEAGQLFRDIAVAISVSVILSLLVAVTVIPA 491

Query: 510 MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF----MRARFWGVGISILFSICSICLLF 565
           +   ++R      + I  +           + +    +R R  G+ +  + +  +    +
Sbjct: 492 LSSRLLRADDQLPMRIWGVDHIASGFRRAVMAYVRITVRYRSIGIAMVAVIAGGAAIASW 551

Query: 566 THGLNYGIDFKGGIQLGV 583
           T         +G   L  
Sbjct: 552 TFLPRLEYLPEGNRNLVF 569



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 60/149 (40%), Gaps = 6/149 (4%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I +A+A  I +         +     + + I  T    AL G   N+ ++A +   IG  
Sbjct: 347 IGAALAAFILMLFLRSTRATIIVSLAIPVSIVATFVVMALTGRTLNVISLAGIAFAIGMI 406

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
           V+  +VV + +    +L     S R+       +  G  + +++   +  +P+ +     
Sbjct: 407 VDAAIVVLENI---FRLREAGYSRREAAYLGAKQVWGAILVSALTTVLVFIPILIMQLEA 463

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           G +    A+ ++  ++++   ++ +   +
Sbjct: 464 GQLFRDIAVAISVSVILSLLVAVTVIPAL 492



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/246 (12%), Positives = 87/246 (35%), Gaps = 10/246 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                G   +     + V +S +   + +    +I  +         VR         A  
Sbjct: 780  TQDIGNYPVVTPGGQIVPVSALADVVLTAGPTEIRHRERLRTVTLEVRPSNDLPLEQAVE 839

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             +   V   + +    + IQ +         +      + +I++ I + + + I F+ + 
Sbjct: 840  MLETQVVAVLEQQGLPNDIQLSVSGTADQLSQTWAAIQINLIVAMIIVFLVMAILFESFL 899

Query: 692  FALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              L  + ++ +     +G  AL         ++  +   + L+G  VN+ +++    +  
Sbjct: 900  LPLVIMISVPVAAAGGVGGLALLNTYQTQPLDMLTLLGFVILVGIVVNNAILIVH--QTL 957

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
              L    +   D I+++    +     +++ + + +LP+ ++   G  +       +  G
Sbjct: 958  FHLRDEGMEPVDAIEEATRNRIRPIFMSTLTSVMGMLPLIIFSGEGSELYRGLGAVVVGG 1017

Query: 805  IVVAAS 810
            + ++A 
Sbjct: 1018 LSLSAF 1023


>gi|258424914|ref|ZP_05687785.1| MMPL domain-containing protein [Staphylococcus aureus A9635]
 gi|257844748|gb|EEV68791.1| MMPL domain-containing protein [Staphylococcus aureus A9635]
          Length = 829

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/592 (12%), Positives = 189/592 (31%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDDSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTDIGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYVKGIGLAVGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +     ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKHGPNAESTNDLVHDLRDYNKDAQDNYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 87/263 (33%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGILQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +      + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDDSRDNVKSHLKDLRDNHNVQTELTGTGMTSTDIGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYVKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKRIKVNK 338


>gi|220923917|ref|YP_002499219.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
 gi|219948524|gb|ACL58916.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
          Length = 1037

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/519 (12%), Positives = 153/519 (29%), Gaps = 35/519 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                + RFP+                  +         +   +  + ++  + +K    
Sbjct: 31  FRSLPITRFPNIDVPIV---------SVSINQPGAAPSELQTQVTKWVEDAVAGVKGVKH 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              ++ +  +  T+ F      +   + V   +  +   L    ++ ++       + I+
Sbjct: 82  ITSAITEGNSATTIEFRLEVNTDRAVNDVKDAIAKIRMNLPRTIEEPIINRVEIAGLPIM 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +   +   +     + S  +      QI              +  ++     P RL  L 
Sbjct: 142 VYGASAPAMTPE--DLSWFVDDVVARQIQGLRGVGGVGRLGGVAREVRVTLKPDRLLALG 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A ++    L +    G    +     S            ++   +            
Sbjct: 200 ITAADVNRQLRLTSADMAGGRAELGGQEQSIRTLAASASLDTLAATSIVLP--------- 250

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                      G R+        +            L    +     S  +  S     E
Sbjct: 251 -----------GGRKVRLDELATLSDGAEEPRTFARLNGEPVVAFAISRASGASDASVAE 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   LR     ++ ++++        G+           AGL ++V+F+ +   + 
Sbjct: 300 IVAKKIDELRTAYPNVRFDLIDTSVTNTI-GNYHSAMHGLMEGAGLAVLVVFLFLRDWRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+A  ++ L+V  T   +S +G +L   S+  I L  G+ VD  I+  E I    R  +
Sbjct: 359 TLIAAVALPLSVFPTFWAMSAMGFSLNAVSLLAITLVTGILVDDAIVEIENIVRHIRLGK 418

Query: 447 SVFCSL---DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
           S + +          A   I  + +        +    G   + F +T+  ++ +S+  A
Sbjct: 419 SPYRAALEGADEIGLAVIAITATLVAIFAPVSFMGGIAGQYFKQFGLTIAAAVFMSLLVA 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             I   M  + +R          P+ R +      +++ 
Sbjct: 479 RLITPMMAAYFMRDHGHHEETPGPVMRTYTRVVAWSVRH 517



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 80/224 (35%), Gaps = 7/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V L+     S A    +       T       +   +    +I  E+     + +
Sbjct: 789  DRAVRVALEANLQGSDALAVAIAQALATPTARNLPPGVTIRQTGDAEIMGEVFEGFAMAM 848

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +L  + + F  +   L  + +L L I   +    +F    ++  V  +L L+G 
Sbjct: 849  GAGLMMVLGVLILLFGSFLQPLTILFSLPLSIGGAILGLLIFNRPISMPVVIGILMLMGV 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAVEEMA---RGVDRITAIVDAGRKRARPIVMTTIAMAAGMVPSAMALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG      AI +  G++V+   S+     I + + D      R+
Sbjct: 966  GGEFRSPMAIAVISGLIVSTLLSLLFVPAIFVLMDDLSRLFGRL 1009



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/249 (10%), Positives = 72/249 (28%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +   R V L  + +  +  +      +            +       +   ++    
Sbjct: 246 SIVLPGGRKVRLDELATLSDGAEEPRTFARLNGEPVVAFAISRASGASDASVAEIVAKKI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++    P       +                 +  + +A+L+       W   L A   
Sbjct: 306 DELRTAYPNVRFDLIDTSVTNTIGNYHSAMHGLMEGAGLAVLVVFLFLRDWRATLIAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T    +  G   N  ++ A+  + G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSVFPTFWAMSAMGFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHIRLGKSPYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              +  +E     +  +        P++  G   G     F + +A  + ++   +  I 
Sbjct: 423 AALEGADEIGLAVIAITATLVAIFAPVSFMGGIAGQYFKQFGLTIAAAVFMSLLVARLIT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PMMAAYFMR 491



 Score = 51.2 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 54/507 (10%), Positives = 138/507 (27%), Gaps = 30/507 (5%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
            +++  + L                P       + L L+L  G+ L   +   D +   +
Sbjct: 520 VTLVVGLALFTGSILSTRLLPAGFLPKEDAARTL-LVLELPPGARLDDTIAVSDRIARAI 578

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
           +   +    F+                +T++      +      V   +  +        
Sbjct: 579 RSLPEVSSVFVDGGRQLPGKKEIRLATLTINLTPKSARTRKQADVEAAIMELLRDEPD-- 636

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
            +   +    +    ++       V++        +  +   ++    + +  + +  + 
Sbjct: 637 LRYWSLREGGQRDFALIVAGPDTAVVTD-------VAERMQREVAAIPNLVNVMSTAPLD 689

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
                 +    +   LG +       V             +F          V+  VE  
Sbjct: 690 RTEVRIRPKPAVAADLGVSTDTIAETVRVGTIGDIGANLAKFNATDRQIPIRVQLPVETR 749

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
           G                    +                +I          R   A  +  
Sbjct: 750 GQVETL-------------ESLKVPTKSGAAVPLTAVADISLGRGPTAIDRYDRAVRVAL 796

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                 +        +      A   A +LP  + I +  +          +        
Sbjct: 797 EANLQGSDALAVAIAQA----LATPTARNLPPGVTIRQTGDAEIMGEVFEGFAMAMGAGL 852

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            +VL VL ++       L   FS+ L++   +  L +    +++P + GI++ +G+   +
Sbjct: 853 MMVLGVLILLFGSFLQPLTILFSLPLSIGGAILGLLIFNRPISMPVVIGILMLMGVVTKN 912

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV---LFFFGGGAVRG 487
            I++ +   EE  +      ++     +    I  + I      V        GG     
Sbjct: 913 AIMLVDFAVEEMARGVDRITAIVDAGRKRARPIVMTTIAMAAGMVPSAMALGIGGEFRSP 972

Query: 488 FAITMGLSILISMFTAISIVRAMMIFI 514
            AI +   +++S   ++  V A+ + +
Sbjct: 973 MAIAVISGLIVSTLLSLLFVPAIFVLM 999


>gi|13473284|ref|NP_104851.1| multidrug resistance protein [Mesorhizobium loti MAFF303099]
 gi|14024032|dbj|BAB50637.1| multidrug resistance protein [Mesorhizobium loti MAFF303099]
          Length = 1058

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/541 (10%), Positives = 141/541 (26%), Gaps = 41/541 (7%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
            I   +   I   +A       +  +  P       +           L+ +    +   
Sbjct: 14  TISVLVFLLIAGWVA----YQSTPKEAEPDV--PIPMMY-------VSLIYQGISPEDSE 60

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             L    +     LK       +  Q    + + F                +Q   + L 
Sbjct: 61  RLLLRPMESKLKSLKGLKEMRSAAFQGGGYVLVEFQPQTNLATALQDTRSKVQDGKADLP 120

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              ++ ++      E  +++   + +              R+  D+I      ++     
Sbjct: 121 QAAEEPVVTEVNISEFPVLVVTLSGELPERVLAA----AARELRDRIEEVPGVLEGSLQG 176

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                +    DP +L        ++       N+            + +     L+E   
Sbjct: 177 SRDDLVEVVIDPMKLSSYGLQLDQLIGAVGASNSLVAAGNIEGSQGKYAVKVPSLIETPE 236

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           +++                     +                 I    A       L    
Sbjct: 237 DVAA--------------------LPVVAGPNAVVQAKDIATIRSTFADATTITRLNGKP 276

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                   +   +   T+     ++                +             +    
Sbjct: 277 AIAIEVKKRIGANLIDTLTKVRAVSDAFVKTMPEGMHVTYTQDKSVFVNQLLGDLQNHVM 336

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           I   LV IV+   +      L+   +I  + ++ + LL+++G T+ +  +  ++L +G+ 
Sbjct: 337 IAVILVFIVILYALSGR-ASLLIGLAIPSSFLIGILLLAMMGYTINMIVLFSLILAVGML 395

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGA 484
           VD  I+V E       +      +  +   R    +  + +T + A   L F+    G  
Sbjct: 396 VDDAIIVTEFAERRMSEGMPKQEAFALAAKRMAGPVIAATMTRIAAFSPLLFWPGIIGDF 455

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           ++   IT+ +++  SM  A+     +     +  +             ++   +      
Sbjct: 456 MKYMPITLIVTLSASMLYALVFAPTLGAIFAKAPQHHEDGNRDGWYMAVVKQAVRFPITV 515

Query: 545 A 545
            
Sbjct: 516 M 516



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 81/242 (33%), Gaps = 7/242 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKK 640
            V     V  +   + + S      +    +G+    + ++ + G ++  T   +  V  
Sbjct: 243 VVAGPNAVVQAKDIATIRSTFADATTITRLNGKPAIAIEVKKRIGANLIDTLTKVRAVSD 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
              + +P                +L+      V+I+ I + I I        +L     +
Sbjct: 303 AFVKTMPEGMHVTYTQDKSVFVNQLLGDLQNHVMIAVILVFIVILYALSGRASLLIGLAI 362

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                  +   A+ G   N+  + +++  +G  V+D ++V +   +  +  +  +  ++ 
Sbjct: 363 PSSFLIGILLLAMMGYTINMIVLFSLILAVGMLVDDAIIVTE-FAE--RRMSEGMPKQEA 419

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              +     G  +  +M    +  P+  W    G  +    I +   +  +   ++  A 
Sbjct: 420 FALAAKRMAGPVIAATMTRIAAFSPLLFWPGIIGDFMKYMPITLIVTLSASMLYALVFAP 479

Query: 818 PI 819
            +
Sbjct: 480 TL 481



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 83/240 (34%), Gaps = 40/240 (16%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                +      +  Q  V + V            +  +     + S  L +        +
Sbjct: 795  VQANVTAGTQVATVQQEVTQAVADMNLGSGIRWKLAGSNEDSAEASAFLSK----AFGAA 850

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA-------LFGIEFNLTAVAAVLTL 729
               + + +  +F  + ++  + + +  +  T+G F         FGI  +   V A+   
Sbjct: 851  IFLIFLVLLAQFNKFTSVWLVLSCV--VMATIGVFLGLLITGETFGIVMSGIGVIALA-- 906

Query: 730  IGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
             G  VN+ +V+   YDR+R+            D + ++  E     V T+++A + VLP+
Sbjct: 907  -GVVVNNNIVLIDTYDRLREE------GWDKMDAVLQTCRERARPVVLTAVSAILGVLPI 959

Query: 787  AV-WGGSVIG--------------SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A   G  +                S +  + FG+  A   ++ +   +L+     + K  
Sbjct: 960  AFGLGLEIFHHETTINAPSTQWWISLSSAIVFGLSFATVLTLVVTPSMLMVFTRAKVKPG 1019


>gi|108804173|ref|YP_644110.1| protein-export membrane protein SecD [Rubrobacter xylanophilus DSM
           9941]
 gi|108765416|gb|ABG04298.1| protein-export membrane protein SecD [Rubrobacter xylanophilus DSM
           9941]
          Length = 487

 Score =  136 bits (341), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 94/493 (19%), Positives = 186/493 (37%), Gaps = 49/493 (9%)

Query: 45  SLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITL 100
            LGLDL+GG  + LE       +     +Q   + +R  +   G+    +R Q QN++ +
Sbjct: 36  QLGLDLKGGVRVQLEGYQHGGSEVTREEMQRAVEIIRQRVDSLGVTEPEIRLQGQNQVLV 95

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
                  ++   + +    Q    ++    ++  +                         
Sbjct: 96  DLPGISDRDRAVEVIGRTAQLGFYEVLAFEERAGV------------------------- 130

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
                                +   + R + +   + D  R  +      +         
Sbjct: 131 ------------------PEGRVDEAKRDIRESLRQDDAYREGKTKILFEESPNPGGEGL 172

Query: 221 NSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
                 +     +         +       G                  +     +    
Sbjct: 173 YVAGYVVRERPDMTGDAVESANLGRDPA--GRLQVEINLTGRGGDQFFDLTRQIVDNALE 230

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
           R    T          V+   V+  P+    +             + A  L  +L+ G+L
Sbjct: 231 RGEPGTGRLAIVLDQDVVSAPVVDEPIPGGQVVIQNTSSPTGLPEQEARELEIVLQTGAL 290

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
           P+ + ++    +G  LG++S+  G  A + G  L++LF++ +Y   G+VA  ++ +   L
Sbjct: 291 PVNMRVLSVETIGPTLGTESLRSGLIAALVGFGLVLLFLVAIYRALGVVAGLALLIYAFL 350

Query: 401 TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
              L+  +  T+TLP IAGIVL +G+A D+NI++ ERI+EE R+ ++   ++ +G+ + +
Sbjct: 351 LWGLIVAIPVTVTLPGIAGIVLSVGVAADANIVIFERIKEEVRRGKTPRTAIQVGYQKGF 410

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             I D NIT LI   +LF      VRGFA+ + + +++SMFTA+ + RA++  +      
Sbjct: 411 RAILDGNITTLITAFILFAMASAQVRGFAVLLAIGVVLSMFTAVVVTRALLGLLSSRGIH 470

Query: 521 KSIDINPLSRFFL 533
            S  +  +S+  L
Sbjct: 471 LSPAMMGVSKKSL 483



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 27/230 (11%), Positives = 89/230 (38%), Gaps = 4/230 (1%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L+   +              +++    P     Q      +  +   +     + + E 
Sbjct: 242 VLDQDVVSAPVVDEPIPGGQVVIQNTSSPTGLPEQEARELEIVLQTGALPVNMRVLSVET 301

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           +GP +  E +R G++  ++    +L+++   ++    + A   L++      G      +
Sbjct: 302 IGPTLGTESLRSGLIAALVGFGLVLLFLVAIYR-ALGVVAGLALLIYAFLLWGLIVAIPV 360

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              L  +A ++  +G + +  +V+++R+++ ++      + R  I     +     +  +
Sbjct: 361 TVTLPGIAGIVLSVGVAADANIVIFERIKEEVR---RGKTPRTAIQVGYQKGFRAILDGN 417

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +   I+   +     + +  FA+ +A G+V++  +++ +   +L  +   
Sbjct: 418 ITTLITAFILFAMASAQVRGFAVLLAIGVVLSMFTAVVVTRALLGLLSSR 467


>gi|24216545|ref|NP_714026.1| cation/multidrug efflux pump [Leptospira interrogans serovar Lai
           str. 56601]
 gi|24197860|gb|AAN51044.1| cation/multidrug efflux pump [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 1083

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/522 (10%), Positives = 156/522 (29%), Gaps = 42/522 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   ++     +I   G L      L +  +D FP+                  +     
Sbjct: 9   QRPIFVTCTVLLILVAGYLS-----LSKLGVDLFPNVTIPVVTVT---------VPYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +           +    + + F      +    +V   +  
Sbjct: 55  APNEIETLIAKPVEDELSTISGVKRVRAVCNEGVGTVIVEFTLETDVKYAEQQVRDKVSS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D K+ ++      +  IV+     +   +   + + E ++Q    +  ++   
Sbjct: 115 VKPKLPNDAKEPVIRRIDPADQPIVIIALRAELPDAELYDIANEEVKQI---LLSTKDVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++  E D ++L++ +   + +S        +                   
Sbjct: 172 NVTIYGGRKREIHVELDRNKLKEHMIPASVVSNRLASGGMNIPAGKVSK----------- 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +   L   T N      +                      +   +       
Sbjct: 221 --------TDKELVYRTINEFQSPEEIRDTPISLFGNEVPIKIGQLGEVKDTVEDETSRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG---SLPIKLNIVEERNVGADLGS 358
            L        +   ++  +     ++       +                  +      +
Sbjct: 273 YLNGRKAVFLMVYKQSGSNTVAVAQSVKKKVLEINQDLSKRNGSPELTSTNDSSVTIDNN 332

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               K T  I   L +IV+ + +   +  L+   ++  +++    L+++ G T+ + ++ 
Sbjct: 333 IYDVKETIIIGIILTIIVVLLFLGSVRSTLITGLALPNSLLGAFILMAIAGFTVNVMTLL 392

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + L +GL +D  I+V E I       ++   +   G       +  + +T +   + + 
Sbjct: 393 ALSLAVGLLIDDAIVVRENIFRHREMGKTAREASIEGTKEVTLAVIATTMTVIAVFMPIA 452

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           F     G  +R F +T+  ++LIS++ A++I   +  +    
Sbjct: 453 FISGIVGQFLREFGLTVCFALLISLYDALTIAPMLSAYFGGK 494



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 56/149 (37%), Gaps = 8/149 (5%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +         L     L   +       A+ G   N+  + A+   +G  ++D +VV 
Sbjct: 350 VVLLFLGSVRSTLITGLALPNSLLGAFILMAIAGFTVNVMTLLALSLAVGLLIDDAIVV- 408

Query: 742 DRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSF 797
              R+N+  +     + R+   +   E     + T+M      +P+  + G  G  +  F
Sbjct: 409 ---RENIFRHREMGKTAREASIEGTKEVTLAVIATTMTVIAVFMPIAFISGIVGQFLREF 465

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + + F ++++   ++ IA  +  +    
Sbjct: 466 GLTVCFALLISLYDALTIAPMLSAYFGGK 494



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            + + +    + IY+ +      +   +  +  L L +        +     ++ ++  ++
Sbjct: 912  MAIAMGLGILFIYMVLASLYESFITPIAIMLVLPLALCGAFIALFITQKSLDIFSMIGLI 971

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG +  + +++ D      +L +     ++ I ++  E L   + TS A    +LP+A
Sbjct: 972  MLIGVATKNSILLVDF---TNQLLSQGKEMKEAIIEAGRERLRPILMTSFALIAGMLPIA 1028

Query: 788  VWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +          S  + +  G++ +   ++ +      +I        R
Sbjct: 1029 IGLNEASRQRTSMGVAIIGGLISSTILTLVVVPAAFSYIEKLNQMVRR 1076



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 55/524 (10%), Positives = 146/524 (27%), Gaps = 42/524 (8%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            ++   +++    +I  + L++                      +  G  L   S + L+V
Sbjct: 588  LKRPFFILSGAILIFVVSLVLTKFIPKTFLPAQDEGKFTVTLDMPPGTSLEKMSQIALQV 647

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D              ++RS+ K+  I           + +    SR ++    +   FL+
Sbjct: 648  D-------------QKIRSY-KEIKIVSMFNTNRSTNMFVEMVLSRDRKMNTTQFKAFLR 693

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               ++        ++                +       +E   + + +R+ +       
Sbjct: 694  NELAEF--SYANPIVKDVDNVGGGQRPFTLTVSGQKREVVEDYAKKLFERLQKSPALLDV 751

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                 +     ++     P R +++L                  G + G       +G  
Sbjct: 752  DTSYRTGAPEFRVV----PDREKEVLLGV--------------PGTIIGTELRTLVEGTT 793

Query: 241  YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              V  +  +          +              +        +             ++ 
Sbjct: 794  PAVYRENGVEYDIRVRLKDSQRDLKENFYSSFVPNFNNRLIPIQNVAKAEESTGLATINR 853

Query: 301  RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  V   A  + K    G    E   I    +   S        +  +      S +
Sbjct: 854  LNRNKAVEIYADVNPKGPGMGGAMEEVTKISQIEIPLPSGVKIGYSGQAESFKEMGVSMA 913

Query: 361  IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF-SIFLNVILTLALLSLLGATLTLPSIAG 419
            I  G   +   +VL  L+          +A    + L +      L +   +L + S+ G
Sbjct: 914  IAMGLGILFIYMVLASLYESF----ITPIAIMLVLPLALCGAFIALFITQKSLDIFSMIG 969

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +++ IG+A  ++IL+ +   +   + + +  ++          I  ++   +   + +  
Sbjct: 970  LIMLIGVATKNSILLVDFTNQLLSQGKEMKEAIIEAGRERLRPILMTSFALIAGMLPIAI 1029

Query: 480  ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
                         + +   ++ S    + +V A   +I +  +M
Sbjct: 1030 GLNEASRQRTSMGVAIIGGLISSTILTLVVVPAAFSYIEKLNQM 1073


>gi|23015386|ref|ZP_00055164.1| COG0841: Cation/multidrug efflux pump [Magnetospirillum
           magnetotacticum MS-1]
          Length = 879

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/527 (14%), Positives = 158/527 (29%), Gaps = 40/527 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   +   G++        +  +   P                     L   
Sbjct: 12  RRPVATMLLAVGLFLTGMVA-----FDRLPVAPLPKVDFPTI---------SVSARLPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     +        +  Q    IT+ F   R     A  V   +  
Sbjct: 58  DPATMAATVAAPLERRLGEIPGVSEMTSTSTQGSTSITVQFDLDRSINGAAHDVQAAINA 117

Query: 122 VNSKLNVDPKKNLLVTT-TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             S L +D             E  I++     D + S  +  + + I     +I   E  
Sbjct: 118 AASDLAIDLPSPPTYRKINPAEAPIMILAVTSDSLTSAKVFDAADAI--MASRISQVEGV 175

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q   S      +    +P +L  +      +       N +         F   S G  
Sbjct: 176 AQVSLSGAEKPAVRVRVNPGQLAAMGVGLEDVRTALANANVNIPKGSLDGAFEAMSIGAN 235

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +                     T      +                ++   +     G
Sbjct: 236 DQL--------------------FTASAYAPLIIKSSNGAIVRLSAVASVVDSVENTRLG 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      I S +   +   T++    +   LR          V         G+  
Sbjct: 276 GWFNRDKAVLIIISKQPGANVVETVDRIREILPQLRRWMPAGTKVSVVSDRTVNIRGNLD 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T AI  GLV++V+++ +      L A  ++ L++  T A + L+G +L   S+  +
Sbjct: 336 DVETTLAISIGLVVMVVYLTLGRMTPTLAASVTVPLSLAATFAFMWLVGYSLNNISLMAV 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G  VD  I++ E I     K +    +   G      T+    ++ +   + L F 
Sbjct: 396 TISVGFVVDDAIVMIENITRHMEKGEGPLEAAIKGSKEIVFTVVSITMSLVAVFIPLLFM 455

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           G   G   R FA+T+ ++I++S   ++++   +   ++ + K + + 
Sbjct: 456 GGILGRLFREFAVTLSVAIVVSAIVSLTVTPTLFGHLMVHAKPRPLS 502



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/225 (15%), Positives = 82/225 (36%), Gaps = 12/225 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK----- 668
            ++  V +             ++ +++ + ++           V    +  +        
Sbjct: 279 NRDKAVLIIISKQPGANVVETVDRIREILPQLRRWMPAGTKVSVVSDRTVNIRGNLDDVE 338

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             + + I  + M++Y+ +  +    L A  T+ L +  T  F  L G   N  ++ AV  
Sbjct: 339 TTLAISIGLVVMVVYLTL-GRMTPTLAASVTVPLSLAATFAFMWLVGYSLNNISLMAVTI 397

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G+ V+D +V+ + +    +         +   K   E +   V  +M+     +P+  
Sbjct: 398 SVGFVVDDAIVMIENI---TRHMEKGEGPLEAAIKGSKEIVFTVVSITMSLVAVFIPLLF 454

Query: 789 WG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G   G +   FA+ ++  IVV+A  S+ +   +   +       
Sbjct: 455 MGGILGRLFREFAVTLSVAIVVSAIVSLTVTPTLFGHLMVHAKPR 499


>gi|256419654|ref|YP_003120307.1| acriflavin resistance protein [Chitinophaga pinensis DSM 2588]
 gi|256034562|gb|ACU58106.1| acriflavin resistance protein [Chitinophaga pinensis DSM 2588]
          Length = 1059

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 66/586 (11%), Positives = 165/586 (28%), Gaps = 42/586 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +V++++++  +G++            +  P                    V    
Sbjct: 9   KRPTIVVVVFTILTLLGVMS-----YKSLNYELLPKFTSPVVT---------IATVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + ++K    +    +  + +T+   +    +         +  
Sbjct: 55  SPKEVESTITKKIEDAVASMEKIKKIISKSSESLSTVTVELNNDANVDIALQDAQRKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D K   L   +  ++ I+            + +    I ++    +       
Sbjct: 115 ILSDLPTDAKAPSLNKFSLDDLPIMTL---SATASMDSKQFYDLIDKKLQPLLSRLPGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    DP +L     +  ++                          N  
Sbjct: 172 QISLIGGQEREIQVNIDPKKLEAYKLSILQVRQLITN-------------------ANLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               KV+     +    A       +    +        +       ++      V    
Sbjct: 213 FPTGKVKTQDQQILVRLAGKYKDVDQLRNLVLATTATGTQIRLKDVADVQDAQKDVDRLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK-LNIVEERNVGADLGSDS 360
            +        +   +   +     E      A +    +       +   +    L S  
Sbjct: 273 RVDGTSSIALMVQKQNDANAVTVSEEMKKAIASIEKDYVSANLKIFIANDSSDFTLESAD 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I   LV  V+ + +   +  +    SI  +++ T   + L G +L L S+ G+
Sbjct: 333 SVIHDLIIAIVLVAAVMLLFLHSIRSAIFVMISIPASLVATFIGMKLFGFSLNLMSLLGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I       ++   +   G      T+    +  ++  + +   
Sbjct: 393 SLVVGILVDDAIVVLENIYRHMEMGKNRVRAAFDGVKEIGFTVTSITLVIVVVFLPISLT 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFII--RYKKMKSIDINPLSRFFLIP 535
                  +R F + + +S ++S+ ++  IV  +        +   K+     +  F    
Sbjct: 453 NELVSKILREFCVVVMISTMLSLLSSFMIVPLLSSRFGKLEHITGKNFFEKFILWFEAQL 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                       W +       I +I LL    +  G  + GG  +
Sbjct: 513 QKFTDWMTSILKWALTHKRYTLIVAIGLLILSFMLVGKGYIGGEFI 558



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 86/256 (33%), Gaps = 14/256 (5%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +      D+   + +++ L   D +                       +  +  + K  
Sbjct: 252 QIRLKDVADVQDAQKDVDRLARVDGTSSIAL-MVQKQNDANAVTVSEEMKKAIASIEKDY 310

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           ++  + +    ++     + +  +I   I+ +++ A  ML+++        A+  + ++ 
Sbjct: 311 VSANLKIFIANDSSDFTLESADSVIHDLIIAIVLVAAVMLLFL---HSIRSAIFVMISIP 367

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
             +  T     LFG   NL ++  +  ++G  V+D +VV + +    +      +     
Sbjct: 368 ASLVATFIGMKLFGFSLNLMSLLGLSLVVGILVDDAIVVLENI---YRHMEMGKNRVRAA 424

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + E       TS+   I V+ + +         ++  F + +    +++  SS  I 
Sbjct: 425 FDGVKEIGFT--VTSITLVIVVVFLPISLTNELVSKILREFCVVVMISTMLSLLSSFMIV 482

Query: 817 APILLFIYDWRAKNAR 832
             +            +
Sbjct: 483 PLLSSRFGKLEHITGK 498



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/197 (15%), Positives = 75/197 (38%), Gaps = 7/197 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWY 691
             V +   +K+  +     I        +   +        ++IS + + LI + +   + 
Sbjct: 832  SVQQEFAQKLETLRKPVGISYLWAGDAENQGDSFGTLGAALLISIVMVYLIMVALYDNYI 891

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            +    + ++ L I   L   AL     N+  +  ++ LIG    + +++ D      ++ 
Sbjct: 892  YPFVVLFSIPLAIIGALLALALTNNTLNIFTILGMIMLIGLVAKNAIILVDF---TNQMK 948

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVA 808
                S  + +  + N  L   + T++A  I +LP+A+  G V       A  +  G++ +
Sbjct: 949  EQGQSTMEALIHANNARLRPILMTTIAMVIGMLPIALATGGVAATKNGLAWVIIGGLISS 1008

Query: 809  ASSSIFIAAPILLFIYD 825
               ++ +   +   +  
Sbjct: 1009 MFLTLIVVPVVYKIVDG 1025


>gi|154250626|ref|YP_001411450.1| acriflavin resistance protein [Parvibaculum lavamentivorans DS-1]
 gi|154154576|gb|ABS61793.1| acriflavin resistance protein [Parvibaculum lavamentivorans DS-1]
          Length = 1068

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 62/507 (12%), Positives = 142/507 (28%), Gaps = 42/507 (8%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             ++   G++  +         +  P       I           +V +    +     L
Sbjct: 19  MVLLVAAGIISFI-----SIPKEADPDI--PIPIFY-------VSIVHQGISPEDAERLL 64

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               +     L+          Q    I L F  +  K+     V   +    ++L  D 
Sbjct: 65  IRPMETELRSLEGLKDITSIASQGHAGILLEFDVNFDKDAALQDVREKVDLARAELPSDT 124

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
            + ++         +++   + D              R+  D+I    + +Q        
Sbjct: 125 DEPIVREFNTALFPVLIVTLSGDVPERALY----NAARKLKDEIEAVPTVLQAELVGHRE 180

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
             L    DP++L     + +++     L N             R S     L E + ++ 
Sbjct: 181 ELLEVVIDPAKLESYNISQSELINIVSLNNRLVAAGNIDTGQGRFSVKVPGLFETREDV- 239

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                              + +     G          +I +                  
Sbjct: 240 -------------------LSLPIKVSGEGVVTLSDIASINRTFKDPDGYARFNGHPAIA 280

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
              + +   +                 G                   +    + +     
Sbjct: 281 IEITKRIGTNIIDNNNQVREAVEKFTEGWPEAIHVNYTLDASSWIFRALGSLQSSITTAI 340

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            LV+IV+   +      ++   SI  + ++    L+  G T+ +  + G++L +G+ VD 
Sbjct: 341 ILVMIVIVAALGLR-SAMLVGISIPTSFMIGFFFLASAGYTINMMVMFGMLLAVGMLVDG 399

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA- 489
            I+V E    +  +      +  +   R +  +  S  T L A + +  + G + +  + 
Sbjct: 400 AIVVVEYADRKMSEGLDRREAYTLAAKRMFWPVASSTATTLAAFLPMLLWPGVSGKFMSY 459

Query: 490 --ITMGLSILISMFTAISIVRAMMIFI 514
             IT+ + +  S+ TA+  V  M    
Sbjct: 460 LPITLIVVLSASLLTALIFVPTMGTLF 486



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 88/269 (32%), Gaps = 30/269 (11%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V  +  V            +I                    +         +   +  + 
Sbjct: 789  VPISNFVSREAQSQVSTIERINGYRRIMVKANTAIDPATGEKINVDEKVREISAWIADQN 848

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
             +       +       + +  L       +I +   M I +  +F  +Y ++  ++T+I
Sbjct: 849  IDPAVRVQFRGANEEQAESASFLGG----ALIGALFLMFIILLTQFNSFYHSILTLSTVI 904

Query: 702  LDITKTLGFFALFGIEFN-LTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISF 757
            L     L    + G  F+ +     ++ L G  VN+ +V+ D   R+R++          
Sbjct: 905  LSTVGVLIGMVVTGQPFSVIMTGTGIVALAGIVVNNSIVLIDTYQRLREDT------ADA 958

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMA------------VWGGSV---IGSFAIPMA 802
             + + ++  + L   + T++     +LPMA            V GG V       +  + 
Sbjct: 959  VEAVLRTAGQRLRPIMLTTITTMFGLLPMALQINLDFVTREIVLGGPVSVWWVQLSTAII 1018

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            FG+  +   ++ +   +L      RAK A
Sbjct: 1019 FGLGFSTLLTLVLIPVLLAAPSVIRAKRA 1047



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 80/252 (31%), Gaps = 7/252 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V     V LS + S   + +  D   +        +   +    + +     +    
Sbjct: 243 PIKVSGEGVVTLSDIASINRTFKDPDGYARFNGHPAIAIEITKRIGTNIIDNNNQVREAV 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           +K TE  P +   N  +         +      +  + I ++I I        A+    +
Sbjct: 303 EKFTEGWPEAIHVNYTLDASSWIFRALGSLQSSITTAIILVMIVIVAALGLRSAMLVGIS 362

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +         F A  G   N+  +  +L  +G  V+  +VV +      +  +  +  R+
Sbjct: 363 IPTSFMIGFFFLASAGYTINMMVMFGMLLAVGMLVDGAIVVVE---YADRKMSEGLDRRE 419

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGIVVAASSSIFIA 816
               +          ++     + LPM +W G      +   I +   ++ A+  +  I 
Sbjct: 420 AYTLAAKRMFWPVASSTATTLAAFLPMLLWPGVSGKFMSYLPITLIV-VLSASLLTALIF 478

Query: 817 APILLFIYDWRA 828
            P +  ++    
Sbjct: 479 VPTMGTLFGKAE 490


>gi|297537458|ref|YP_003673227.1| acriflavin resistance protein [Methylotenera sp. 301]
 gi|297256805|gb|ADI28650.1| acriflavin resistance protein [Methylotenera sp. 301]
          Length = 1039

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/513 (10%), Positives = 137/513 (26%), Gaps = 36/513 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +    ++  +I   G++        +  +DR PS                 +  L   
Sbjct: 9   KRHVLAWMVSGVIILFGIIA-----YQRIGVDRVPSIDFPVIT---------VNTTLRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D ++  +    +   +          +     + I+++FA S+  +   ++V   +  
Sbjct: 55  NPDVIDTSITSVIESAINTTPGIEHIQSASSPGVSSISITFALSKNIDVAYNEVQSKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D    ++         ++    + D       + ++        +        
Sbjct: 115 VVRRLPTDTDPPVVQKVDSNASPVIWLALSGD---RTIQQLNLYASNVLKKKFETINGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    +     P R+     T   +       +    G                
Sbjct: 172 EVTLGGRRDRVIRVYIQPERMAAYKLTANDLITAFNREHVQLPGGFLVSSQAEQLLKLDL 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 ++                      +  D+ GA    +                R
Sbjct: 232 EFHKMTDL-------------------ANMVIVDKAGAPIRLKDVATLEDGISDNRQIAR 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P +   +       + +   E    L   +R       +  +   +        + 
Sbjct: 273 YNGKPTVGIGMIKIANANTVDIIKEVEHRLETDVRPNLPAGMVLEISTNDGIFINQLVAS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K           +++ + +      ++    I ++++  +A++   G T    ++  ++
Sbjct: 333 LKEHLVEGTLFAALIVLIFMRSFSSTVMICLEIPVSLLGAIAVMYFAGYTFNSMTLLALL 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD  I+V E I            S     +      F +  T L +  V+F   
Sbjct: 393 LLIGVVVDDAIVVRESILRHMEGEVGEGISAADLKNPLAVAAFRTKTTILGSNEVVFAVL 452

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             +     I   +  +  +        A+++  
Sbjct: 453 ASSASLVCIFAPVIFMDGIIGMFFKSFAVVVTF 485



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 59/166 (35%), Gaps = 9/166 (5%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAI-TTLILDITKTLGFFALF--GIEFNLTAVAAVLTLI 730
            + +   +L+Y+ +  ++   +  +   L   +    G  AL   G   N+ ++  ++ LI
Sbjct: 872  VFALGFLLLYMVLASQFNSFIQPLFIMLAQPLAIIGGLIALLMTGNTLNIYSMIGLVLLI 931

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMA 787
            G    + +++ D      +L     S  D + ++    L   V TS+      +      
Sbjct: 932  GLVAKNSILLVD---LTNQLVEKGASINDALKEACPIRLRPVVMTSLTIILALLPAALGL 988

Query: 788  VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              G       ++ +  G++ +   ++ +       +     K   I
Sbjct: 989  GAGSETNKPLSVAIIGGMISSTLLTLVVVPAAYSLVMGRLKKTKPI 1034



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 81/239 (33%), Gaps = 21/239 (8%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       L    S+   +   +       G                 + R+   V+  +
Sbjct: 252 IRLKDVATLEDGISDNRQIARYNGKPTVGIGMIKIA-NANTVDIIKEVEHRLETDVRPNL 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
              + L    N  I   ++   L    + G + +A+ +LI++     +   +     + +
Sbjct: 311 PAGMVLEISTNDGIFINQLVASLKEHLVEGTLFAALIVLIFM---RSFSSTVMICLEIPV 367

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK----NMKLYTTSISFR 758
            +   +      G  FN   + A+L LIG  V+D +VV + + +     +    ++   +
Sbjct: 368 SLLGAIAVMYFAGYTFNSMTLLALLLLIGVVVDDAIVVRESILRHMEGEVGEGISAADLK 427

Query: 759 DLIDKSINETLGRS---------VYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFG 804
           + +  +   T             V  S A+ + +    ++   +I     SFA+ + FG
Sbjct: 428 NPLAVAAFRTKTTILGSNEVVFAVLASSASLVCIFAPVIFMDGIIGMFFKSFAVVVTFG 486


>gi|257074473|ref|YP_003162871.1| heavy metal efflux pump, CzcA family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048694|gb|ACV37880.1| heavy metal efflux pump, CzcA family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1031

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/687 (10%), Positives = 193/687 (28%), Gaps = 54/687 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R    +++ + ++   G+   L        +D FP   P               + +  
Sbjct: 10  LRYKLLVLLAFVLMAFFGVRAFL-----NVPVDAFPDVTPN-------------QVNVYT 51

Query: 61  DEDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +        ++       +   + L              + + + F D          V 
Sbjct: 52  ESPGLAAEDVEQLLTTPIETAMAGLPGVEQIRSVSLFGLSYVGVYFKDDVDIYFARRLVG 111

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ    +L     +  L   +     +             A++            +  
Sbjct: 112 EKLQEAKERLPAGYGEPSLGPNSSGLGQVFWYTVESADEKLSAMDLRTLHDWTVRLMLRT 171

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           +              Q   + +P +L +   +   +       N    G    +   +  
Sbjct: 172 APGVDDVTTWGGQEKQYQVQINPEKLIKYGLSFKAVMEALAANNRQVGGQYINLGQEQYL 231

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                LV +  +I  + +                     E             + +  A+
Sbjct: 232 VRGLGLVANTTDIGNVVIA--------------------EREGVPIHVREVAEVKEGPAL 271

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +   I   +   +    ++       +      P               
Sbjct: 272 RFGAVTRDGKEVALGIALARINENPKNVVDAVKQKLDLAGQALPPGVSIKPVYDRTELVD 331

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            + +  +      + LV IVLF+ +   +  +V   ++ L ++    ++   G +  L S
Sbjct: 332 KALATAESALVEGSILVAIVLFLFLGEIRSAVVVIATLPLAMLFAFLMMQYFGLSANLMS 391

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALI 472
           +AG+ +GIG+ VD  +++ E              +    +        + I  + +  ++
Sbjct: 392 LAGLAIGIGMMVDGAVVMVENAFRLLSHKTGQVVNRTHVMLEAAREVINPIAFAILIIIV 451

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             + LF      G   +  A T+  +++ S+   +++V  +   I++ K+ K   +    
Sbjct: 452 VFLPLFSLTGLEGKLFKPMAFTITFAMVGSLILTLTLVPVLAALILKPKEEKDTFLVRWI 511

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           +   +P        + +     +++L S  +            +       +   A    
Sbjct: 512 KAGYLPVLDWALENKKKVIVASLTLLVSALATFPFLGKEFMPTLQEG---AIMFRATGIP 568

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S+  S   S Q+ D+  + +   K  L  +        A    +E++ +   +     
Sbjct: 569 STSLEESIRVSQQMNDVLKKEYPQTKMVLATIGRAEKGETADANYMEVLVEVKPQA--EW 626

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIIS 676
             + +        +E +   +  V++ 
Sbjct: 627 PEKMSIPELSDRMKETLEVALPTVVVG 653



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/261 (14%), Positives = 87/261 (33%), Gaps = 3/261 (1%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G + +      P+ +  V    E   +   +      E    + L     +     
Sbjct: 241 TTDIGNVVIAEREGVPIHVREVAEVKEGPALRFGAVTRDGKEVALGIALARINENPKNVV 300

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
             ++       + +P            ++  + +      ++  +I + I +++   +  
Sbjct: 301 DAVKQKLDLAGQALPPGVSIKPVYDRTELVDKALATAESALVEGSILVAIVLFLFLGEIR 360

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MRKNMKL 750
            A+  I TL L +         FG+  NL ++A +   IG  V+  VV+ +   R     
Sbjct: 361 SAVVVIATLPLAMLFAFLMMQYFGLSANLMSLAGLAIGIGMMVDGAVVMVENAFRLLSHK 420

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
               ++   ++ ++  E +    +  +   +  LP+    G     F  PMAF I  A  
Sbjct: 421 TGQVVNRTHVMLEAAREVINPIAFAILIIIVVFLPLFSLTGLEGKLF-KPMAFTITFAMV 479

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            S+ +   ++  +     K  
Sbjct: 480 GSLILTLTLVPVLAALILKPK 500



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 72/233 (30%), Gaps = 13/233 (5%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G I +   +   V LS V +         +  +         + ++ +  D   Q    +
Sbjct: 776  GNIPVRTSSGAMVPLSRVATVEMDEGYTFVRREQLSRYAVLQMDVRGRDVDGFVQEADEK 835

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +  +                   +    L     + + +  I +L+Y         A   
Sbjct: 836  IRSQLKLPEGYWIEWGGAFENQQRAMARLALIVPLTIGL--IFVLLYTAFN-SLTLA-TL 891

Query: 697  ITTLILDITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            I   +       G F  A+ G   ++ +    + + G ++ + +V+   +          
Sbjct: 892  IIANV-PFAAIGGVFGLAITGQYVSVPSAIGFIAVFGVAMLNGIVLVSFLN---NQRGQG 947

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
            +S RD + +     L   + T+  A + ++PM +    G       A  +  G
Sbjct: 948  LSIRDAVRQGTELRLRPVLMTASVAILGLIPMLLAQGVGAETQRPLATVVVGG 1000


>gi|169335673|ref|ZP_02862866.1| hypothetical protein ANASTE_02093 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258411|gb|EDS72377.1| hypothetical protein ANASTE_02093 [Anaerofustis stercorihominis DSM
           17244]
          Length = 428

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 80/168 (47%), Gaps = 4/168 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  + + K +   +I    + +++ I F     + A  +L + I   L   +  G
Sbjct: 242 TIGPTLGADSLNKSLKAGVIGVGLVFLFMII-FYLLPGVVADISLAIYIVIYLFLMSGLG 300

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +   L  +A ++  IG +V+  V++++RM++ ++   +  +    I+   +  L   +  
Sbjct: 301 VTLTLPGIAGIILSIGMAVDSNVIIFERMKEELR---SGKTIMGAIEAGFSRALTSIIDA 357

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++   I+ L +   G   I  FA+ +  G+VV+  +++F+   +++ +
Sbjct: 358 NITTIIAGLVLFFLGAGTIKGFALTLMVGVVVSMFTAVFVTKRLMILV 405



 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 135/389 (34%), Positives = 225/389 (57%), Gaps = 23/389 (5%)

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
            + +   +++ +++    +++++E IR RID +G+ E TI + G+ +I + +P  +D   
Sbjct: 56  NVVLQAKESDGNKINDDTLDKAVETIRTRIDSLGVKEPTISKQGNDKIRVSIPDVEDQEE 115

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
              ++G TAK+ F          G             N Y+ E                 
Sbjct: 116 ALSMIGKTAKLQFVGPDGKVILDGSSVKSAKYEIQKTNNYVEE----------------- 158

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                 PVV ++FD+ GA+ F + T  NIGK +++ LDG  ++ P +  AI  GK  I+G
Sbjct: 159 ------PVVSLTFDDKGAKAFGDATSANIGKVISIELDGEKISTPTVQSAITDGKCVITG 212

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               E A  LA +++AGSLP++L  +E R +G  LG+DS+ K   A V G+ L+ LFMI+
Sbjct: 213 MKDGEEATKLATLIKAGSLPVELEAIEIRTIGPTLGADSLNKSLKAGVIGVGLVFLFMII 272

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   G+VAD S+ + +++ L L+S LG TLTLP IAGI+L IG+AVDSN+++ ER++EE
Sbjct: 273 FYLLPGVVADISLAIYIVIYLFLMSGLGVTLTLPGIAGIILSIGMAVDSNVIIFERMKEE 332

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  +++  +++ GFSRA ++I D+NIT +IA +VLFF G G ++GFA+T+ + +++SMF
Sbjct: 333 LRSGKTIMGAIEAGFSRALTSIIDANITTIIAGLVLFFLGAGTIKGFALTLMVGVVVSMF 392

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           TA+ + + +MI +    K   + +  +  
Sbjct: 393 TAVFVTKRLMILVTSSDKFSDLKLFGIKN 421



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 61/165 (36%), Gaps = 6/165 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMP-KNRISLGLDLRGGSHLVLE 59
           M+    L +L+ ++            LP S +       P K+ I+ GLDL GG ++VL+
Sbjct: 1   MKKKNGLKMLFILVAVAFCYYVFMFGLPVSKVIGIYDIDPIKDTINYGLDLTGGVNVVLQ 60

Query: 60  V---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKV 115
               D +   +  L    + +R+ +   G+   ++ +  N KI +S  D   +E     +
Sbjct: 61  AKESDGNKINDDTLDKAVETIRTRIDSLGVKEPTISKQGNDKIRVSIPDVEDQEEALSMI 120

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
               +                +    +  I  + N +++ +    
Sbjct: 121 GKTAKLQF-VGPDGKVILDGSSVKSAKYEIQKTNNYVEEPVVSLT 164


>gi|153833771|ref|ZP_01986438.1| cation efflux system protein CusA [Vibrio harveyi HY01]
 gi|148869943|gb|EDL68906.1| cation efflux system protein CusA [Vibrio harveyi HY01]
          Length = 1059

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/632 (12%), Positives = 173/632 (27%), Gaps = 40/632 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++ N    + +D  P       I                  
Sbjct: 11  NNRFLVLIATLALVLGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     E           ++   +   +
Sbjct: 118 APKLPPNAKPTLGPDATGVGWVYSYV-LQDKTGKHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   E G         D    P        +
Sbjct: 237 LTSIEDIK------------------SLPLKVTEKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I       A L+ G       +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIAKVKDKLADLQRGLPEGVEIVATYDRSTLIDAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVISKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLPEHKNPVNRGLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLL-FTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             + I  ++     + I++     +                +G +         + +   
Sbjct: 519 RPLLITSLKYPKTMIIIALGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
           R  L+       +          + R +    
Sbjct: 579 RELLQQTNKLIKTVPEVQTVWGKIGRAETATD 610



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 79/287 (27%), Gaps = 20/287 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQNYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        + ++                   +    L    +V + I
Sbjct: 816  WVFVDIDGRDLGSYVVEAQQVVAEQLELPAGYSLAWSGQYEYMERAKDRL--SVVVPITI 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYS 733
            + I +L+Y   R         I  L L +    G     +    F++      + L G +
Sbjct: 874  AIIMLLLYFSFR---RVGEVMIIMLTLPLAMVGGLWLMHILNYNFSIAVGVGFIALAGVA 930

Query: 734  VNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++   +           +  K    +    D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHYKKLDAEESKQKLEAKDLTDAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +P+      G  V+   A PM  G+  A   ++ +   I        
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQRE 1037



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++     +   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVIAKVKDKLADLQRGLPEGVEIVATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDAAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVISKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|329114186|ref|ZP_08242948.1| Multidrug resistance protein MdtC [Acetobacter pomorum DM001]
 gi|326696262|gb|EGE47941.1| Multidrug resistance protein MdtC [Acetobacter pomorum DM001]
          Length = 1102

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/521 (13%), Positives = 154/521 (29%), Gaps = 38/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G+L           +   P+      +                  
Sbjct: 10  RPVATILLTVAMLLGGIL-----GYRTLPVSDLPNVDFPVIM---------VQATQAGGS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +           Q   +I L F+ SR     A  V   LQ  
Sbjct: 56  PEEIASSVAAPLERHLGQIADVTEMTSQSSQNTTRIMLQFSLSRDINGAARDVEAALQAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ +    ++N          + +L    +        +         +  +   E   Q
Sbjct: 116 HADMPSSLRQNPTYRKANPNGAPILI-LTLTSDTHTRPQLYDYATNVLVQHLSSVEGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   L  +  E +P  L +   +   +       N                      
Sbjct: 175 VEISGSALPAIRAEINPLPLYRYGISFEDVRAALASANAHTP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +   G        N      +   D+       R         +   +  + +   
Sbjct: 217 --KGIIDQGGMRFTLDTNDQVSKAQDYRDLIIAWRNNRPVRLADIAQVRDSVEDLRNAGY 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   AI   +A  +   T++       ML+A         +          S +  
Sbjct: 275 YNGQPSVIAIVFPQAGANVIHTVDQINAKLPMLKAALPGGVDLHIGLDRSLTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++++ + +   +  L+    +  +++ T  +++LLG +L   S+  + +
Sbjct: 335 QLTLVISVVLVVLMVLLFLHSVRMTLIPAIVVPASIVATFGVMALLGYSLDNMSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +      +   G      T+F  +I+ +   + +   G 
Sbjct: 395 STGFVVDDAIVVVENIARYIEQGLPPREAAIKGSGEVAFTVFSISISLIAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             G     FA+T+ ++I+ISM  ++++   M  +++  +  
Sbjct: 455 LAGRLFHEFAMTVSITIIISMVLSLTLTPMMAAYLLAPRAP 495



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 53/138 (38%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     +   I  T G  AL G   +  ++ A+    G+ V+D +VV + +    
Sbjct: 355 SVRMTLIPAIVVPASIVATFGVMALLGYSLDNMSLMALTVSTGFVVDDAIVVVENI---A 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +     +  R+   K   E        S++     LP+ + GG        FA+ ++  I
Sbjct: 412 RYIEQGLPPREAAIKGSGEVAFTVFSISISLIAVFLPILLMGGLAGRLFHEFAMTVSITI 471

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   S+ +   +  ++
Sbjct: 472 IISMVLSLTLTPMMAAYL 489



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/158 (21%), Positives = 68/158 (43%), Gaps = 6/158 (3%)

Query: 680  MLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I + I ++ Y   L  ++TL       L    L G EF+L A+  V+ LIG    + +
Sbjct: 933  VYIVLGILYESYLHPLTILSTLPSAGVGALLALQLAGEEFSLIAMIGVILLIGIVKKNAI 992

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ D     +      +S  + I  +        + TS AA +   P+ +   +G  +  
Sbjct: 993  MLVD--FALVAEREHGMSSLEAIRTACLLRFRPIIMTSAAAALGAAPLMITNGYGAELRH 1050

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               I +  G++V+ + +++    I L +  WR +  +I
Sbjct: 1051 PLGIAIVGGLLVSQALTLYTTPVIYLTLDTWRLRVQKI 1088


>gi|296158071|ref|ZP_06840904.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
 gi|295891839|gb|EFG71624.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
          Length = 1106

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/550 (11%), Positives = 151/550 (27%), Gaps = 46/550 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G L        +  +   P+                  + L+ +
Sbjct: 9   RRPVATALLAIAILISGALA-----YFRLPVAPLPNIAFPV-------------IALQAN 50

Query: 62  EDDFVNGFLQMYS-DELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +     + L      +              + I + F  +R     A  V  
Sbjct: 51  MAGASPETMAATVSEPLERRLATIADVNQLTSISYVGSSMIIVVFGLNRDINGAARDVQA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   + L    + N          + ++    +        +           Q+   
Sbjct: 111 AIQAARADLPTTLRSNPTYRQYNPAGAPIMV-LALTSDTLTKAQLYDSADSVIQQQLSQV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   Q       L  +  E +P +L         +                         
Sbjct: 170 DGVGQITLGGGALPSVRVELEPGKLNSYGIGLEDVRAAI--------------------G 209

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                        G      T+N       P  D+                 +      +
Sbjct: 210 AANANSAKGHIDQGEQRYVVTSNDQISKAAPYRDVVIAYRDGAPVLLRDVAQVRDSNENI 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +  +         I       +   T+E       ++ A         V      +   
Sbjct: 270 RNAGLYNGKSAVLVIVYPTPGSNVVQTVEQIRSRLPIIEAALPSAIHVNVAIDRSESVRA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  + T  I   LV+ V+F+ +L  +  L+   ++ L+++ +   + LLG ++   S+
Sbjct: 330 SVADTERTLFIAVLLVVGVVFVFLLSPRATLIPAVALPLSIVGSFGPMYLLGYSIDNLSL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + +G G  VD  ++V E I            +   G +    T+   +++ +   + +
Sbjct: 390 MALTIGTGFVVDDAVVVLENIVRHLEAGLDPKEAALRGSAEVGFTVISMSLSLIAVFLPI 449

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
               G        FA+T+ ++IL+S+  +++I   M  +++  ++   +           
Sbjct: 450 LLMPGIVGLLFHEFAVTLSIAILLSLLISLTITPVMCAYLLSRERTMHLQSRWAYWVEAQ 509

Query: 535 PDCIAIQFMR 544
            +     + R
Sbjct: 510 FERFKQAYAR 519



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 43/113 (38%), Gaps = 6/113 (5%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     L L I  + G   L G   +  ++ A+    G+ V+D VVV + +   ++ 
Sbjct: 357 RATLIPAVALPLSIVGSFGPMYLLGYSIDNLSLMALTIGTGFVVDDAVVVLENI---VRH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
               +  ++   +   E     +  S++     LP+ +  G V      FA+ 
Sbjct: 414 LEAGLDPKEAALRGSAEVGFTVISMSLSLIAVFLPILLMPGIVGLLFHEFAVT 466



 Score = 44.3 bits (102), Expect = 0.079,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 99/246 (40%), Gaps = 16/246 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + + +      + Q           + +      + +   +++ +   +I   +++    
Sbjct: 850  AAMMTFSNSHTATQVNHQSGLVAGTISFNLPAGGSLSEAGQLIAQAERDIGMPASVHGAF 909

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFAL 713
                +   + +    + ++ + + + I + + ++       I + +    I  TL    +
Sbjct: 910  AGAAQAYAQSMGAVPLLILAALVVVYIVLGVLYENTVHPLTILSTLPSAGIGATLALL-I 968

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM----RKNMKLYTTSISFRDLIDKSINETL 769
            FG  F++ A+  ++ LIG    + +++ D      R+        ++ RD I ++    L
Sbjct: 969  FGTPFSVIAMIGIILLIGIVKKNGIMMVDVAIQLQREE------GLNARDAIHQAAVVRL 1022

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + T+ AA +  +P+A+    G S+     + +  G++V+   +++    I L++   
Sbjct: 1023 RPIMMTTAAAVLGAVPLAIGIGQGASLRQPLGVTVMGGLLVSQVFTLYTTPVIYLYLDRL 1082

Query: 827  RAKNAR 832
            RA+ AR
Sbjct: 1083 RARLAR 1088


>gi|325105173|ref|YP_004274827.1| acriflavin resistance protein [Pedobacter saltans DSM 12145]
 gi|324974021|gb|ADY53005.1| acriflavin resistance protein [Pedobacter saltans DSM 12145]
          Length = 1052

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 71/664 (10%), Positives = 182/664 (27%), Gaps = 52/664 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++++++ +  +GLL            +  P   P                +    
Sbjct: 9   RRPSLVIVVFTALTLLGLLS-----YFSLGYELLPKFSPNVV---------SISTIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S ++       +  +  + + ++  +    +   +     +  
Sbjct: 55  SPNEVESTVTKKIEDAVSSMENIKKINANSYEGLSVVIITLTEKAQIDVALNDAQRKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D K+  L   +  +  ++             I     + ++    I       
Sbjct: 115 ILATLPDDVKQPSLSKFSLDDFPVITM---SASAHMDDISFYDLMDKRIAPIISRVSGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D  +L+    +   +    +                     N  
Sbjct: 172 QVNLIGGSEREIKVALDAKKLQGYGLSVLAVQQAILAS-------------------NLD 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V+     +    +       +    +        +       ++           
Sbjct: 213 FPTGSVKTKAQDILVRLSGKYTNVEEMRNLVITTSKDGSQIRLGDIADVQDTQKETEKLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL-NIVEERNVGADLGSDS 360
            +            ++  +     E    +   L+     I L   +   +    L S  
Sbjct: 273 RINRANSIAVQIIKQSDANAVTVSEGTKAIIEQLKNDYKDINLDIKIVNDSSDYTLQSAD 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +V+   +   +  ++   SI  ++I T   +++ G TL L S+ G+
Sbjct: 333 AVIHDLMMAVVLVAVVMLFFLHSLRNAVIVMVSIPASLIATFIGIAMFGYTLNLMSLLGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I+      ++   +   G      T+       ++    +   
Sbjct: 393 SLVVGILVDDAIVVLENIQRHMEMGKNKVRAAIDGTREIGFTVVSITFVIVVVFFPIAIS 452

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530
            G     +R F + + +S L+S+  + +IV  +            +    K I       
Sbjct: 453 TGMVANILRQFCVVVIISTLLSLVASFTIVPLIFSRFGKLERVEGKNIFGKFILWFEKQL 512

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-----KGGIQLGVLA 585
                    I     +   V + I+  +             G +F     KG   L +  
Sbjct: 513 HKFTNWITRILEWTLKHKAVTLIIMVVLFFSSFGLLVAGYIGFEFFPKSDKGEFLLQIEM 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +   L       +  +      +        + +     G + A     E+  K + + 
Sbjct: 573 PKDASLEQTNLYTQKAENFLSEKKEIVQMITTVGQSSEGMGGTTATAYKSEINVKLVDKP 632

Query: 646 VPLS 649
              +
Sbjct: 633 ERNN 636



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 85/268 (31%), Gaps = 11/268 (4%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            + +    L +  ++      +    +       + +     +   + +Q          
Sbjct: 234 TNVEEMRNLVITTSKDGSQIRLGDIADVQDTQKETEKLARINRANSIAVQIIKQSDANAV 293

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-----ISAIAMLIYIWIR 687
            V E  K  I ++       N +I     S +   +    VI        +  ++ ++  
Sbjct: 294 TVSEGTKAIIEQLKNDYKDINLDIKIVNDSSDYTLQSADAVIHDLMMAVVLVAVVMLFFL 353

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                A+  + ++   +  T    A+FG   NL ++  +  ++G  V+D +VV + +   
Sbjct: 354 HSLRNAVIVMVSIPASLIATFIGIAMFGYTLNLMSLLGLSLVVGILVDDAIVVLENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFG 804
            +      +          E     V  +    +   P+A+  G   +++  F + +   
Sbjct: 411 QRHMEMGKNKVRAAIDGTREIGFTVVSITFVIVVVFFPIAISTGMVANILRQFCVVVIIS 470

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +++  +S  I   I            +
Sbjct: 471 TLLSLVASFTIVPLIFSRFGKLERVEGK 498



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 61/159 (38%), Gaps = 7/159 (4%)

Query: 671  VGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++ + I + LI + +   + +    + +L L +   L   AL      +  +   + L
Sbjct: 867  IALLAAVILVYLIMVALYDSFVYPFVVMFSLPLALIGALLALALTNNALGIFTILGFIML 926

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G    + +++ D       L     S  + +  + +  L   + T++A    +LP+A+ 
Sbjct: 927  MGLVAKNAIILVDF---TNHLKAQGKSTHEALILANHARLRPILMTTIAMVFGMLPIALA 983

Query: 790  GGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             G+        A  +  G+  +   ++ +   +     +
Sbjct: 984  SGAGADWKNGLAWVIIGGLTSSLFLTLVVVPVMYQIFDN 1022


>gi|91977043|ref|YP_569702.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
 gi|91683499|gb|ABE39801.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB5]
          Length = 1037

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/506 (11%), Positives = 129/506 (25%), Gaps = 33/506 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P+      +                     +   +    +     +     
Sbjct: 30  YAFLPVAAVPNIDFPMVM---------VSASRPGAAPSVMAATVAAPLERRLGEIAGLDK 80

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +    Q +I L F+  R  +  A  V   +    S L  D              + V
Sbjct: 81  ITSTSSLGQTRIQLQFSLGRDIDRAARDVQAAINASISDLPTDLPTLPRFRKFNSAAAPV 140

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                +      A             +I           S      +    +P  L    
Sbjct: 141 FI-LALTSKTMPASAIYDVADTVLAQRISQVPGVGDVTVSGADQPAVRIALNPVALSNAG 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
             T  +    V  N      +F      ++      +    E   I +            
Sbjct: 200 IATDDVRTAIVTANPVGPVGIFDGERQSETISTNRQMRTAAEFGDIVIK----------- 248

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                                  +                       + +   +   T++
Sbjct: 249 ---------SANGNSLRLSDVATVSDATRNSRQIAWYNKQPAVLIQITKQGNANVIETVD 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
               L   L+          V     G    S      T    A LV++V+   +     
Sbjct: 300 RVKELLPELKRWIPASVDISVVTDRTGTIRASVDDMLWTLLATAVLVMVVVLTFLRRMTP 359

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            + A  S+ L +  T A + L G ++   S+  + + +G  VD  I++ E +     +  
Sbjct: 360 TIAAGVSVPLALAGTCAGMWLTGFSINNLSLMALAIAVGFVVDDAIVMIENMYRNLERGM 419

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           +   +   G  +   T+   +++ + A   L F     G  +R F++T+  +I++S   +
Sbjct: 420 APMQAALEGAKQIGFTVLSISLSLIAAFAPLIFMDGIVGRLLREFSLTLTYAIVVSTVVS 479

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLS 529
           +++   +    IR +           
Sbjct: 480 LTVTPMICAHFIRVETTPRQPNWFDR 505



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 74/207 (35%), Gaps = 10/207 (4%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            S Q     K   V +Q     +      ++ VK+ + E+           V    +  +
Sbjct: 269 NSRQIAWYNKQPAVLIQITKQGNANVIETVDRVKELLPELKRWIPASVDISVVTDRTGTI 328

Query: 666 I----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
                      +  + + M++ +    +    + A  ++ L +  T     L G   N  
Sbjct: 329 RASVDDMLWTLLATAVLVMVVVLTFLRRMTPTIAAGVSVPLALAGTCAGMWLTGFSINNL 388

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
           ++ A+   +G+ V+D +V+ + M +N+      ++      +   +     +  S++   
Sbjct: 389 SLMALAIAVGFVVDDAIVMIENMYRNL---ERGMAPMQAALEGAKQIGFTVLSISLSLIA 445

Query: 782 SVLPMAVWGGSV---IGSFAIPMAFGI 805
           +  P+    G V   +  F++ + + I
Sbjct: 446 AFAPLIFMDGIVGRLLREFSLTLTYAI 472



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 94/290 (32%), Gaps = 11/290 (3%)

Query: 546  RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
            R      +       +  +     N   D       G    +    +VVR+      +  
Sbjct: 744  RQIATIYTQRNQYQVVMEIDPKFQNDPTDLDRIFVAGDNGAQVPLSAVVRAKRGLSALAV 803

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
               Q+          L   P  +        + +  + E +      N    G       
Sbjct: 804  FHSQSIPSTTVSFNLLPDVPLQTATANIQRAVDELHMPEGIRGLFDGNAGDFGATS---- 859

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              K  + ++ + IAM I + + ++     L  I+TL       L    + G +  + A  
Sbjct: 860  -NKQPLLILAALIAMYIVLGVLYESLAHPLTIISTLPSAGLGALLALLVTGTQLTVIAFV 918

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ LIG    + +++ D   +        +S  D I ++        + T+MAA  + +
Sbjct: 919  GIIMLIGIVKKNGIMMVDFALE--AERMRGMSSADAIFEACIVRFRPILMTTMAALFAAI 976

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+ V    G  +     I +  G+ V+   +++    I L I   R +  
Sbjct: 977  PLVVAVGPGTELRRPLGITIIGGLFVSQVLTLYTTPVIYLLIDRMRQRRK 1026


>gi|312113351|ref|YP_004010947.1| acriflavin resistance protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311218480|gb|ADP69848.1| acriflavin resistance protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 1038

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 80/649 (12%), Positives = 176/649 (27%), Gaps = 42/649 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   +   G++           +   P+      + +G +L G         
Sbjct: 9   RRPIGTILLSIGLFLAGIVS-----YSALPVASLPNVDMP-AVRVGANLPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + V   +    +     +        +       I + F  SR  ++ A  V   +  
Sbjct: 55  DPETVAATIAAPLERRIGEIAGVKELTSTSSLGSTSIQVQFDLSRNADDAARDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L     +   +       + V+    +   I    +           +I       
Sbjct: 115 AQSDLPSTLTRRPTIRKANAAAAPVMI-LAMTSPIRRPTDLYDLGDLIASTRISQVNGIA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + +        +    DP  L+    +   +       N+     +              
Sbjct: 174 EVMIGGAQTPAVRVVTDPGALKSRGLSAEDVRTAITQANSLVPIGVLDGAEKSTIVTVNG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                       +                 +    +  L   
Sbjct: 234 QITKAAD--------------------YETLVVKVRNGDVVRIADVAQVSNSTSNRLSAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I    +  +   TI+    L   L+          V          S + 
Sbjct: 274 FFNRENAVILIIFKTSDANVIETIDNVYALLPELQRLLPADVKLTVLNDRTQTIRASIAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+ + +      L A  ++ L++  TLAL+   G +L   S+  + 
Sbjct: 334 IQHTLIVCVVLVMLVVLLFLRRIVPTLAAGAAVPLSLSGTLALMWASGYSLDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E              +  +G  +   TI   +++ + A + L F G
Sbjct: 394 ISVGFVVDDAIVVIENCYRNMEAGMKPMQAALVGSRQIGFTIVSISLSLIAAFIPLLFMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSRFFLI 534
           G   R    FA T+  +ILIS   ++++   +    IR                   +L+
Sbjct: 454 GMIGRLFGEFAWTLTYAILISAIVSLTLTPMVCARFIRRLPRPRETWLDRRVEPFFEWLL 513

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                      R   + + + F+  +  +     +  G+   G   L +   R    +  
Sbjct: 514 ARYDRSLTYGLRHRWLMLVVTFASLAFTIQLFIVIPKGLIPSGDTGLIMGFARASAETSF 573

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            + LE+              +     +    G   +Q+           
Sbjct: 574 EAILETQNRVTEILTADPAVEGVATSIAAGGGPGSSQSNEARFFVSLKP 622



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 53/147 (36%), Gaps = 6/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            +    L A   + L ++ TL      G   +  ++ A+   +G+ V+D +VV +     
Sbjct: 354 RRIVPTLAAGAAVPLSLSGTLALMWASGYSLDNISLLALTISVGFVVDDAIVVIENC--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
            +     +           +     V  S++   + +P+   GG +      FA  + + 
Sbjct: 411 YRNMEAGMKPMQAALVGSRQIGFTIVSISLSLIAAFIPLLFMGGMIGRLFGEFAWTLTYA 470

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           I+++A  S+ +   +         +  
Sbjct: 471 ILISAIVSLTLTPMVCARFIRRLPRPR 497



 Score = 41.6 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 3/82 (3%)

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  +S  + I ++  E     + T++AA    LP+      G  +     + +  G+
Sbjct: 938  AERRLGLSSEEAIRRACIERFRPILMTTLAAMFGALPLVFASGPGSELRTPLGLTIVGGL 997

Query: 806  VVAASSSIFIAAPILLFIYDWR 827
             V+   +I+    I L++   R
Sbjct: 998  AVSQLLTIYTTPVIYLWLDKLR 1019


>gi|172063218|ref|YP_001810869.1| acriflavin resistance protein [Burkholderia ambifaria MC40-6]
 gi|171995735|gb|ACB66653.1| acriflavin resistance protein [Burkholderia ambifaria MC40-6]
          Length = 1055

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/636 (12%), Positives = 171/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  P+                  ++   
Sbjct: 8   LRRPYTFIVMAVMIVL-----ATPLALMRTPVDVLPAVNIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSD-----ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           + + F    +           L + +        +       + +        +    + 
Sbjct: 50  NYNGFSASEMTNRITAVHERILTTTVNNIEHIESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +   +   +     Q+ 
Sbjct: 110 VSSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LADIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  L     T A +       N         +     
Sbjct: 168 TVRGAQIPFPYGGRTRVVAIDLDPQALLSKGLTPADIVNAVNTQNLVLPTGTAKMGQSEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +I                     D+    +     +     ++    A
Sbjct: 228 RIDTNASADTIADI--------------------NDLPIQTVNGATTYLREVASVRDGFA 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLMSILKTGDASTLKVVSDLKALLPKVIPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I         V  ++  G        F S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTGVHDAILEGAGEIAVPAFVSTLCICIVFV 447

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + + R ++  +      SRF 
Sbjct: 448 PMFFLTGVARFLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPQQAGTGPDRSTSRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I       F R R W + +  +  +              +       LG       D  
Sbjct: 508 RIHHAFNGAFERLRAWYIVLLSMLLVRRRFYAMCFLGFCVLSTGLVFVLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R +L +     I       ++   V  +  P D 
Sbjct: 568 NIRLHLRAPTGYRIEETARLTDQVERVIREAVPPDE 603



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 61/152 (40%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  ++ +     W   L    ++ L I  +L   +  G   N+  +  +   +G
Sbjct: 338 ALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + + +++ L        D I +   E    +  +++   I  +PM    G
Sbjct: 398 ILVDDATVTIENIERHLHL---GTGVHDAILEGAGEIAVPAFVSTLCICIVFVPMFFLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  +V A  +S  ++  ++  +
Sbjct: 455 VARFLF-VPLAEAVVFAMLASYVLSRTLVPTL 485



 Score = 54.3 bits (128), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  I+ +   +        + G   ++ A+   +  +G
Sbjct: 890  VAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 949

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +              ++    +   + T++A  I ++PMA+   
Sbjct: 950  VATANSILVVSFARQRLAA---GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1006

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1007 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1035


>gi|294849655|ref|ZP_06790396.1| MmpL efflux pump [Staphylococcus aureus A9754]
 gi|294823458|gb|EFG39886.1| MmpL efflux pump [Staphylococcus aureus A9754]
          Length = 829

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/592 (12%), Positives = 188/592 (31%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVVF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++ +A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFAVLSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
                                                                       
Sbjct: 342 KFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFASVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGIVQPNITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       V+  +   I+V  +++ G   +       A  +V A
Sbjct: 256 QVMKTETDYIKGIGLAIGTAGSAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VLSALTLLPALISIFHKRIKVNK 338


>gi|289669039|ref|ZP_06490114.1| RND superfamily protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 1028

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 85/645 (13%), Positives = 187/645 (28%), Gaps = 47/645 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++ +  +  +GL+ A      +  L+  P                   L      
Sbjct: 10  RPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGST 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQG 121
            D V   L   ++E  + +        +       I + F+D  R     A      L  
Sbjct: 56  PDEVERNLVRPAEEALATMTGIKRMRSTATADGANIFIEFSDWDRDIAIAASDARERLDA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V      D ++  +   +  +  ++  +      ++ A +      R+   +I       
Sbjct: 116 VRDDFPEDLQRFHVFKWSSSDEPVLKVRLASQTDLTGAYDMLD---REFKRRIERIPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S     ++     P RL     +   +S                         N  
Sbjct: 173 KVEISGAPPNEVEIAIAPDRLTAHDLSLNDLSERL-------------------GKLNFS 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +   +++ +G  +            +    +      A+         +      +  GR
Sbjct: 214 VSAGQIDDNGQRIRVQPIGELRDLQELRELVL----NAKGVRLGDIAEVRLKPTRMNYGR 269

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSDS 360
            L            +   +     + A      +RA  L   + +    N   A   S +
Sbjct: 270 RLDGRPAIGLDVYKERSANLVEVSKAALKEVEDIRAQPLMRDVQVKVIDNQGKAVTSSLA 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G+
Sbjct: 330 ELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   F
Sbjct: 390 LLAVGMLVDNAVVVVESIYQERERMPDQPQLAALLGTRSVAIALSAGTLCHCIVFVPNLF 449

Query: 480 FGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                    +   AIT+ +S+L S   AIS++  +   +     + S             
Sbjct: 450 GETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTSERGVIARLQRRYA 509

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +A       +   GI ++ +I  + +  T    +G D      +            + 
Sbjct: 510 KVLAWTLAHRGWSVAGIILVSAISLVPMKLTKIDMFGGDGGNEAFIQYQWKGSYTREQLG 569

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
             +  ++    + +                G +   T     VK 
Sbjct: 570 EEIGRVENYLEANRAKYHITQIYSWFSEVEGSNTVVTFDASKVKD 614



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 86/237 (36%), Gaps = 11/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI-VPLSTIQNTE 655
            +L  +QI   + Q     +   + ++    + V        ++  +  +  P       +
Sbjct: 768  SLVEVQIRPAATQIGRTNRQTTLTIKANLAEKVTVPEARAAMESPLKAMRFPAGYSYTFD 827

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E + + +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 828  GGDYQNDGEAMNQMVFNLVIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 887

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +     L    +     + +   E L   + 
Sbjct: 888  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN---NLRRRGMGRTQALVEGSRERLRPIMM 944

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T   A ++++P+          G      A  +A G+  +   S+     I   + D
Sbjct: 945  TMGTAILAMVPISLTSTTMFSDGPPYFPMARAIAGGLAFSTVVSLLFLPTIYAILDD 1001



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 74/204 (36%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +   ++    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDIRAQPLMRDVQVKVIDNQGKAVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPDQPQLA-----ALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|254253960|ref|ZP_04947277.1| Cation/multidrug efflux pump [Burkholderia dolosa AUO158]
 gi|124898605|gb|EAY70448.1| Cation/multidrug efflux pump [Burkholderia dolosa AUO158]
          Length = 1056

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 74/636 (11%), Positives = 170/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  PS                  ++   
Sbjct: 8   LRRPYTFIVMAIMIVL-----ATPLALMRTPVDVLPSINIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSFL-----KKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           + +      +      +   +             +       + +        +    + 
Sbjct: 50  NYNGLSATDMTNRITSVHERVLTTTVNNIQHIESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +   +   +     Q+ 
Sbjct: 110 VSSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSRTLGEQS--LADIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  L     T A +       N         +     
Sbjct: 168 TIPGAQVPFPYGGRTRVVAVDLDPQALLAKGLTPADIVNAVNAQNLVLPTGTAKMGQTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +I                     ++    +     +     ++    A
Sbjct: 228 RIDTNASADTIADID--------------------NLPVQTVNGATTYLREVASVRDGFA 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLVSILKTGDASTLKVVSDLKALLPKVIPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  L+ LG T+ + 
Sbjct: 328 DAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALAALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G        F S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTNLHDAILEGAGEIAVPAFVSTLCICIVFV 447

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + + R ++  S      SRF 
Sbjct: 448 PMFFLTGVARFLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPQQAGSGPARSTSRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +       F R R W V +  +  +              +       LG       D  
Sbjct: 508 RVHHAFNAAFERLRAWYVVLLSILLVRRRFYATCFLGFCVLSTGLVFVLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R +L +     I       ++   V  +  P D 
Sbjct: 568 NIRLHLRAPTGYRIEETARLADQVERVIREVVPPDE 603



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 62/152 (40%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  ++ +     W   L    ++ L I  +L   A  G   N+  +  +   +G
Sbjct: 338 ALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALAALGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + + +++ L     +  D I +   E    +  +++   I  +PM    G
Sbjct: 398 ILVDDATVTIENIERHLHL---GTNLHDAILEGAGEIAVPAFVSTLCICIVFVPMFFLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  +V A  +S  ++  ++  +
Sbjct: 455 VARFLF-VPLAEAVVFAMLASYVLSRTLVPTL 485



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  ++ +   +        + G   ++ A+   +  +G
Sbjct: 890  VAMAIVLVYLLIVVNFQSWLDPLIIVSAMPAALAGIAWMLFITGTHLSVPALTGAVMTVG 949

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +              ++    +   + T++A  I ++PMA+   
Sbjct: 950  VATANSILVVSFARQRLAA---GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1006

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1007 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1035


>gi|157375956|ref|YP_001474556.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
 gi|157318330|gb|ABV37428.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
          Length = 1087

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/512 (13%), Positives = 139/512 (27%), Gaps = 41/512 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +    +   G++        +  +   P                          
Sbjct: 10  RPVTVWMFMFAVILFGMV-----GFSRLAVKLLPDLSYPTIT---------IRTQYIGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E    +K         R   + + L F      +  +  V   +  +
Sbjct: 56  PVEVEQLVSKPIEESAGIVKGLRKISSISRSGMSDVVLEFEWGTDMDMASLDVREKIDTI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISESTI 181
             +L +D KK LL+        IV    ++       ++Q       +   Q+       
Sbjct: 116 --ELPLDVKKPLLLRFNPNLDPIVRLALSVPDASDTELKQMRTYAEEELKRQLESLTGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +  ++  + +  +L QL    A +                             
Sbjct: 174 AVRLSGGLQQEVHIQLNQEKLTQLNLNAALIRNRIAEE--------------------NI 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     I G             + + +  I                 I        D  
Sbjct: 214 NLSAGKVIQGDKEYLVRTLNQFNSLEELGQIVVYRDAQTLVRLFEVAEIVDAHKERNDIT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      +     +   +              L           V          + S 
Sbjct: 274 RIGDQESIELAIYKEGDSNTVAVARKVTAALEKLNEEG-SKSELKVIYDQSEFIESAVSE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I + L ++++++ +      L+   SI  +VI T  ++     +L + S+ GI 
Sbjct: 333 VTSAALIGSLLSMLIIYLFLRDIIPTLIISISIPFSVIATFNMMYFADISLNIMSLGGIA 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +GL VD+ I+V E I        +   +   G       IF S +T L   V L F  
Sbjct: 393 LAVGLLVDNAIVVLENIDRCRSLGMNKLDAAVTGTKEVAGAIFASTLTTLAVFVPLVFVD 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
              G      A+T+  ++L S+  A++ +  +
Sbjct: 453 GVAGALFSDQALTVTFALLASLLVALTTIPML 484



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/221 (11%), Positives = 80/221 (36%), Gaps = 7/221 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +             +   +  + +    ++IQ       +      +   + +++
Sbjct: 856  QQRVAIVSANLAYGDLNEAVLEARDILAQQTLPTSIQARFGGQNEEMEHSFQSLQIALVL 915

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    +     ++     ++ L G  V
Sbjct: 916  AVFLVYLVMASQFESLLHPLLILIAVPMAVGGSVFGLYITQTHLSVVVFIGLIMLAGIVV 975

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+ +  +     ++    I ++    L   + T++   + + PMA+    G 
Sbjct: 976  NNAIVLVDRINQLRQEGRDKMN---AISEAAKSRLRPIIMTTLTTALGLSPMALGLGDGS 1032

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             V    AI + FG+ ++   ++ +   +         K  +
Sbjct: 1033 EVRAPMAITVIFGLTLSTLLTLVVIPVLYALFDRKEFKVKK 1073



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 77/222 (34%), Gaps = 3/222 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I +   A   V L  V   +++ +  +   +  D E   L   +    ++VA  R + 
Sbjct: 242 GQIVVYRDAQTLVRLFEVAEIVDAHKERNDITRIGDQESIELAIYKEGDSNTVAVARKVT 301

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
              +K+ E    S ++        I   +       +I S ++MLI           L  
Sbjct: 302 AALEKLNEEGSKSELKVIYDQSEFIESAVSEVTSAALIGSLLSMLIIYLFLRDIIPTLII 361

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++   +  T        I  N+ ++  +   +G  V++ +VV + +    +  +  ++
Sbjct: 362 SISIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAIVVLENI---DRCRSLGMN 418

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
             D       E  G    +++      +P+    G     F+
Sbjct: 419 KLDAAVTGTKEVAGAIFASTLTTLAVFVPLVFVDGVAGALFS 460


>gi|87162338|ref|YP_495123.1| antibiotic transport-associated protein-like protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
 gi|87128312|gb|ABD22826.1| antibiotic transport-associated protein-like protein
           [Staphylococcus aureus subsp. aureus USA300_FPR3757]
          Length = 822

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/592 (12%), Positives = 188/592 (31%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 95  KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 154

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 155 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 214

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 215 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVVF 274

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++ +A++++ A++    +  K+  +  
Sbjct: 275 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFAVLSALTLLPALISIFHKRIKVNKLQS 334

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
                                                                       
Sbjct: 335 KFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 394

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 395 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 454

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 455 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 514

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 515 LFASVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 574

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 575 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 631

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 632 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 683



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 72  TKDDGIVQPNITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 131

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 132 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 191

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 192 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 248

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       V+  +   I+V  +++ G   +       A  +V A
Sbjct: 249 QVMKTETDYIKGIGLAIGTAGSAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFA 308

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 309 VLSALTLLPALISIFHKRIKVNK 331


>gi|170757508|ref|YP_001782698.1| preprotein translocase subunit SecD [Clostridium botulinum B1 str.
           Okra]
 gi|169122720|gb|ACA46556.1| protein-export membrane protein SecD [Clostridium botulinum B1 str.
           Okra]
          Length = 422

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 80/198 (40%), Gaps = 4/198 (2%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +    +    K   +           VG  +    +   +   ++    + +
Sbjct: 207 VITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFL 266

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + ++    L A   L L I   L  F+       L+ +A  L  IG +V+  V++++
Sbjct: 267 FMIVYYRVP-GLLADIALALYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFE 325

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   T  S +  ++   +  L   + +++   I+ + +   G   +  FA+ + 
Sbjct: 326 RIREELK---TGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLM 382

Query: 803 FGIVVAASSSIFIAAPIL 820
            GI+++  ++I +   +L
Sbjct: 383 IGIILSMFTAIVVTRLLL 400



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 227/385 (58%), Gaps = 26/385 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +L +   D+V    +++++E+I  R++++G+SE+T+ R G  RI I++PG+ +   +   
Sbjct: 61  MLEEIQADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDS 120

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T ++ F                             +    ++G  +  ATA  + + 
Sbjct: 121 VGKTGELKF--------------------------VGPDKSTILTGKDVKDATAYINQED 154

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           + P V +  +E G ++F + T+  IG+P+A+ +D   LT PV+   I +GKA I+G+ +I
Sbjct: 155 NSPTVGLDLNESGTKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSI 214

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A ++++G+LP+ +  VE R VGA LG++++     A V G+ L+ LFMIV Y  
Sbjct: 215 EEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVGLVFLFMIVYYRV 274

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD ++ L ++L LA  S + ATLTL  IAG +L IG+AVD+N+L+ ERIREE +  
Sbjct: 275 PGLLADIALALYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFERIREELKTG 334

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +L+ G+ RA S+I DSNIT +IA +VL+  G GAV+GFA+T+ + I++SMFTAI 
Sbjct: 335 KSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIV 394

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSR 530
           + R ++        + S+    + R
Sbjct: 395 VTRLLLKLGYDIGILNSLACFRVKR 419



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 75/250 (30%), Gaps = 6/250 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++N    ++   +  + + +          +  +        I+ GLDL+GG  ++ E+ 
Sbjct: 7   KSNKGKSVIIFTLLVVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQ 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D      +    + +   + K G+   ++ R+ Q +I +        + + D V    +
Sbjct: 67  ADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDSVGKTGE 126

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                  V P K+ ++T  + + +        +      ++ +    ++  D        
Sbjct: 127 LKF----VGPDKSTILTGKDVKDATAYINQEDNSPTVG-LDLNESGTKKFADATKKFIGQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      +  P  Q      + + T +K         N  K     V          
Sbjct: 182 PIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTV 241

Query: 241 YLVEDKVEIS 250
                   + 
Sbjct: 242 GATLGANALD 251


>gi|312437030|gb|ADQ76101.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus TCH60]
          Length = 829

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/592 (12%), Positives = 191/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           IN+   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAVGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    ++ K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKHIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPDSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKQGPNAESTNDLVHDLRDYNKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYIKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKHIKVNK 338


>gi|157961604|ref|YP_001501638.1| acriflavin resistance protein [Shewanella pealeana ATCC 700345]
 gi|157846604|gb|ABV87103.1| acriflavin resistance protein [Shewanella pealeana ATCC 700345]
          Length = 1102

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 68/520 (13%), Positives = 141/520 (27%), Gaps = 49/520 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +    +   G++        +  +   P                          
Sbjct: 10  RPVTVWMFMFAVILFGMV-----GFSRLAVKLLPDLSYPTIT---------IRTQYIGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E    +K         R   + + L F      +  +  V   L  +
Sbjct: 56  PVEVEQLVSKPIEEAAGIVKGLRKISSISRSGMSDVVLEFEWGTDMDMASLDVREKLDTI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI---------SHAIEQSMEIIRQRIDQ 173
             +L +D KK LL+        IV    ++ +           +   +       +   Q
Sbjct: 116 --ELPLDVKKPLLLRFNPNLDPIVRLALSVPETSGSTSETMSETELKQMRTYAEEELKRQ 173

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +           S  +  ++  + +  +L QL  +   +                     
Sbjct: 174 LESLTGVAAVRLSGGLQQEVHIQLNQQKLTQLNLSADLIRSRIAEE-------------- 219

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    +     I G             +   +  I                 I   
Sbjct: 220 ------NINLSAGKVIQGDKEYLVRTLNQFNSLDELGQIVIFRDEQTLVRLFEVAQIVDA 273

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                D   +      +     +   +              L   +   +L  V      
Sbjct: 274 FKERNDITRIGDKESIELAIYKEGDANTVAVARKVTDELNKLNQHNPKAEL-KVIYDQSE 332

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +       I + L ++V+++ +      L+   SI  +VI T  ++     +L 
Sbjct: 333 FIESAVNEVTSAALIGSLLSMLVIYLFLRDIIPTLIISISIPFSVIATFNMMYFADISLN 392

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + S+ GI L +GL VD+ I+V E I        +   +   G       IF S +T L  
Sbjct: 393 IMSLGGIALAVGLLVDNAIVVLENIDRCKSLGMNRLEAAVTGTKEVSGAIFASTLTTLAV 452

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
            V L F     G      A+T+  ++L S+  A++ +  +
Sbjct: 453 FVPLVFVDGVAGALFSDQALTVTFALLASLLVALTTIPML 492



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/193 (13%), Positives = 70/193 (36%), Gaps = 7/193 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +             +   ++ +      ++IQ       +      +   + +++
Sbjct: 864  QQRVAIVSANLAYGDLNDAVLNAREILANQTLPTSIQARFGGQNEEMEHSFKSLQIALVL 923

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   + + +  +F+     L  +  + + +  ++    +     ++     ++ L G  V
Sbjct: 924  AVFLVYLVMASQFESLLHPLLILIAVPMAVGGSILGLFITQTHLSVVVFIGLIMLAGIVV 983

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ DR+ +  +     I+    I  +    L   + T+M   + + PMA+    G 
Sbjct: 984  NNAIVLVDRINQLRQDGEEKIT---AISNAAKSRLRPIIMTTMTTALGLSPMALGLGDGS 1040

Query: 792  SVIGSFAIPMAFG 804
             V    AI + FG
Sbjct: 1041 EVRAPMAITVIFG 1053



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 76/222 (34%), Gaps = 3/222 (1%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I +       V L  V   +++ +  +   +  D E   L   +    ++VA  R + 
Sbjct: 250 GQIVIFRDEQTLVRLFEVAQIVDAFKERNDITRIGDKESIELAIYKEGDANTVAVARKVT 309

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               K+ +  P + ++        I   +       +I S ++ML+           L  
Sbjct: 310 DELNKLNQHNPKAELKVIYDQSEFIESAVNEVTSAALIGSLLSMLVIYLFLRDIIPTLII 369

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++   +  T        I  N+ ++  +   +G  V++ +VV + +    +  +  ++
Sbjct: 370 SISIPFSVIATFNMMYFADISLNIMSLGGIALAVGLLVDNAIVVLENI---DRCKSLGMN 426

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
             +       E  G    +++      +P+    G     F+
Sbjct: 427 RLEAAVTGTKEVSGAIFASTLTTLAVFVPLVFVDGVAGALFS 468


>gi|224418252|ref|ZP_03656258.1| acriflavin resistance protein D [Helicobacter canadensis MIT
           98-5491]
 gi|253827577|ref|ZP_04870462.1| acriflavin resistance protein D [Helicobacter canadensis MIT
           98-5491]
 gi|313141785|ref|ZP_07803978.1| acriflavin resistance protein d [Helicobacter canadensis MIT
           98-5491]
 gi|253510983|gb|EES89642.1| acriflavin resistance protein D [Helicobacter canadensis MIT
           98-5491]
 gi|313130816|gb|EFR48433.1| acriflavin resistance protein d [Helicobacter canadensis MIT
           98-5491]
          Length = 1039

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 76/669 (11%), Positives = 172/669 (25%), Gaps = 44/669 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++   ++   G+L         +     P                      +   
Sbjct: 8   RPVVVIVGMILVTLFGILSLKTMPYQLTPKVTRPVIS--------------ISTTWDGAT 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +++   +          R  +  ITL F            V+  L  V
Sbjct: 54  PYEIEREIIERQEQVLKGIDNLVSLESRSRNARAHITLEFNIGTNLTEALLDVSNKLDEV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                 +  + ++  T +    +V      +    +  E       + I      +   +
Sbjct: 114 KGY-PDNIDRPIIRATGDDTSPVVRMALVSE--TKNVREYRTFFNEKVIQYFERIDGVAE 170

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+    D  +L     T   +       N +                    
Sbjct: 171 VNFPGGDDRQMHIILDYQKLAAYDLTIDTLINALERENINISAGTMNYGRKAYRIRTAAE 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +    I+   +                       G +R        + +     +    
Sbjct: 231 YKTPEMIAETII--------------------WSDGVKRVKIGDVAKVQEGFESKIAASF 270

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK--LNIVEERNVGADLGSDS 360
                         A  +          +   L  G L  +                +  
Sbjct: 271 YNGQESLNVFIKPTADANTLELTNQVKEVFEELNEGILKKEGLKLEWVSDQRNYITQAID 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           + KG     A L   +LF+ +      L+   S+ L+V  T  +++ L  TL + S+AGI
Sbjct: 331 LVKGNILAGAFLACGILFIFLRSITSTLIIAISMPLSVFGTFIIMAALNRTLNVVSLAGI 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
              +G+ VDS I+V E I    +  +S   ++  G +     +  S +T +   + +   
Sbjct: 391 SFAVGMLVDSAIVVLENIDRHRKMGKSPIQAVSDGTTEVIGGLIASVLTTVAIFIPIINV 450

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R  AI    ++ +S+F ++ ++  +   + +     +     L       + 
Sbjct: 451 QEEAGQLFRDIAIASSSAVGLSLFVSVLVIPTLSYQVNKRTISLTPPKFLLLLTQKFVEL 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               +            + +  +  L         I F   +   +      + + + + 
Sbjct: 511 GN--YCVKWIMFFVYKSMQNTKNKILTILSLTFISIAFTYFLFPKMEYLPQGNQNFIFAK 568

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L          +   GE  +L    Y   +    +  L  +                   
Sbjct: 569 LNPPPGLSYEERVKTGETLYLCVKDYYASNGYQGSATLPPIANMYYFANETDMQFGMRST 628

Query: 658 GPKISRELI 666
               + ELI
Sbjct: 629 EETRASELI 637



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/208 (11%), Positives = 70/208 (33%), Gaps = 8/208 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                 +  +    E+ +  + +        + +      + +L++  I+         +
Sbjct: 288 NTLELTNQVKEVFEELNEGILKKEGLKLEWVSDQRNYITQAIDLVKGNILA-GAFLACGI 346

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           ++I++R      L    ++ L +  T    A      N+ ++A +   +G  V+  +VV 
Sbjct: 347 LFIFLR-SITSTLIIAISMPLSVFGTFIIMAALNRTLNVVSLAGISFAVGMLVDSAIVVL 405

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFA 798
           + +    +      S    +     E +G  + + +      +P+       G +    A
Sbjct: 406 ENI---DRHRKMGKSPIQAVSDGTTEVIGGLIASVLTTVAIFIPIINVQEEAGQLFRDIA 462

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDW 826
           I  +  + ++   S+ +   +   +   
Sbjct: 463 IASSSAVGLSLFVSVLVIPTLSYQVNKR 490



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/224 (12%), Positives = 82/224 (36%), Gaps = 11/224 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +              +   V +K+     L+  + T         ++      G I+
Sbjct: 816  TLQINPPKNITIQETMEIIQGEVLEKLKNSGALNDNKITLSGTADQLTKIRTALEGGFIL 875

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI-----EFNLTAVAAVLTL 729
            +     + +   ++ + + L  + T+ L +   +    L          ++  +   + L
Sbjct: 876  AVFITYLLMAALYEDFIYPLIILFTIPLALGGGILGLWLTNQFIADQPLDVLTMLGFIIL 935

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G  VN+ +++  +   N++LY   + +++ I  ++   +     +++ +   +LP+ + 
Sbjct: 936  VGTVVNNAILIVYQSLHNIRLY--GMDYQEAILNAVQVRIRPIYMSTLTSLFGMLPLVIA 993

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G  +       +  G+ ++   +IF+   +L F      KN
Sbjct: 994  PGAGSEIYRGLGAVILGGLGLSTFLTIFLIPCLLSFFIKKEVKN 1037


>gi|22450138|emb|CAD44522.1| protein-export membrane protein SecD [Streptomyces griseus]
          Length = 516

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 92/506 (18%), Positives = 186/506 (36%), Gaps = 30/506 (5%)

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKL-- 126
           +      +   +   G+    ++   +  I ++       +   ++V    Q     +  
Sbjct: 1   MDTAVGIIERRVNGLGVSEAEVQTQGSKNIIVNIPKGTNSKQAQEQVGTTAQLYFRPVLT 60

Query: 127 -----------------NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
                                +K      +  +     +  +     + A  Q   +   
Sbjct: 61  VQASCPEPTPSGSATPSGSATQKPGESAESGDKPKGEEATGSEATPSASATTQGRAVTGA 120

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
                    ++ +   S       P +   ++L++           +             
Sbjct: 121 LTKDDPTPGASDKPAPSDSPEATPPIDPATAKLQEEFAKLDCTDPKQRTDAGKNAKATDS 180

Query: 230 VRFLRDSDGNQY--LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
           +     +    Y   +    E+SG  ++ A    + +T + +V + F   GA++F  +T 
Sbjct: 181 IGRCGSNVPGSYEKYILGPAEVSGSDVDDAKGAIEQQTGEWIVSMEFTSAGAKKFQTITG 240

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIP----SGKAQISGNFTIETAGILAAMLRAGSLPIK 343
               +   +     VL   V++        S  AQISG+FT       A       + + 
Sbjct: 241 RLAQQQPPMNQFAIVLDGEVVSAPSVRTALSKNAQISGSFTSSRPRTSATSCPTAPVRVT 300

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
              V    V A LGS+ +  G  A   GL L+V++++V Y     +A  S+ ++ +LT  
Sbjct: 301 FKEVSVTTVTAALGSEQLKGGLIAGAIGLALVVVYLVVYYRGLAFIALLSLLVSGVLTYT 360

Query: 404 LLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           ++SLLG      L LP++ G ++ IG+  DS I+  ER+R+E R+ +++  +++  + RA
Sbjct: 361 IMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIREGRTLRPAIERAWPRA 420

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
             TI  S+  + +A  VLF    G V+GFA T+GL+ L+ +       + +M  + R K 
Sbjct: 421 RRTILVSDFVSFLAAAVLFIVTVGNVQGFAFTLGLTTLLDVVVGFFFTKPLMTLMGRTKF 480

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRA 545
                         +     ++  R 
Sbjct: 481 FSRGGPWSGLDPKRLGAQPPLRRSRR 506



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 19/125 (15%), Positives = 48/125 (38%), Gaps = 7/125 (5%)

Query: 707 TLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           T    +L G       NL AV   +  IG + +  +V ++R+R  ++      + R  I+
Sbjct: 358 TYTIMSLLGPAIGFALNLPAVCGAIVAIGITADSFIVYFERVRDEIRE---GRTLRPAIE 414

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           ++        + +   +F++   + +     +  FA  +    ++      F   P++  
Sbjct: 415 RAWPRARRTILVSDFVSFLAAAVLFIVTVGNVQGFAFTLGLTTLLDVVVGFFFTKPLMTL 474

Query: 823 IYDWR 827
           +   +
Sbjct: 475 MGRTK 479


>gi|294827670|ref|NP_710731.2| cation/multidrug efflux pump [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293385513|gb|AAN47749.2| cation/multidrug efflux pump [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 1083

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/516 (10%), Positives = 148/516 (28%), Gaps = 25/516 (4%)

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +      + +   +    +E  S +          ++  + +   F      +    +  
Sbjct: 30  IYPGAGPEEIEELISKPLEEELSSISGLKKISSRNQEGVSVVFGEFTLDTDIKYAEQQFR 89

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V  KL    K+  +V     +  IV      D   +   + + E ++ R   +  
Sbjct: 90  DKVGLVKPKLPTGIKEPKVVRFDPADQPIVRLALFADLDQAKLYDLAKETVKAR---LEQ 146

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +             ++  E D ++L      T  ++        +     F       S
Sbjct: 147 VQGVGSVKLIGGTRREIQIELDRNKLISYQMPTVVIANRLKTAGLNVPVGKFESGSKETS 206

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR--------- 287
                  E   +I    ++ +    +    K +  +            +           
Sbjct: 207 YRTLGRYESLSQIENTIVSFSGEVGNAVLIKQLGTVRDGTEDEETIGYLWASQGEGVEEK 266

Query: 288 -------DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA---AMLRA 337
                   N  K         +             ++  +     +              
Sbjct: 267 VSFLTKIGNFFKGKKENSATAIKETKPALFIDVYKQSGANTVSVADEVLKRIGKLNEGIQ 326

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
                    +          +         I   L +I ++  +   +  ++   ++  +
Sbjct: 327 NLEGKPKIRLIRDGSKWIRYNVEDVTEAIVIGILLAVITVYFFLGNFRSTVITGLALPNS 386

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           ++    L+  +G T+ + ++  + L +GL VD  I+V E I  +  + + V  + + G +
Sbjct: 387 MLGAFVLMWTMGFTINVMTLLALSLAVGLLVDDAIVVRENIFRKLEEGKGVMEAAETGTT 446

Query: 458 RAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                +  +++T +   + + F     G   + F +T+  ++LIS+F  +++   +  + 
Sbjct: 447 EVTLAVIGTSLTVIAVFLPVGFLSGIVGQFFKQFGLTVVFAMLISLFDGLAVAPMLSAYF 506

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
                  +     +  F      +  Q+ +     +
Sbjct: 507 AGKIDHNAKPNKAVELFDKFQTWLERQYGKVMKVAL 542



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 63/194 (32%), Gaps = 9/194 (4%)

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
           + +           G K  R  +      ++I  +  +I ++     +   +     L  
Sbjct: 326 QNLEGKPKIRLIRDGSKWIRYNVEDVTEAIVIGILLAVITVYFFLGNFRSTVITGLALPN 385

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN-MKLYTTSISFRDLI 761
            +          G   N+  + A+   +G  V+D +VV    R+N  +         +  
Sbjct: 386 SMLGAFVLMWTMGFTINVMTLLALSLAVGLLVDDAIVV----RENIFRKLEEGKGVMEAA 441

Query: 762 DKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
           +    E     + TS+      L    + G  G     F + + F ++++    + +A  
Sbjct: 442 ETGTTEVTLAVIGTSLTVIAVFLPVGFLSGIVGQFFKQFGLTVVFAMLISLFDGLAVAPM 501

Query: 819 ILLFIYDWRAKNAR 832
           +  +       NA+
Sbjct: 502 LSAYFAGKIDHNAK 515



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 76/202 (37%), Gaps = 15/202 (7%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK-ISRELIRKGIVG 672
            ++   + +        A      +  + + + +P          G     +EL+   ++ 
Sbjct: 816  DRARTIVINANLAPGGAVQDATRIADEILRKELPPPPGIRYNFQGQSEDFKELLANIVLA 875

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
              ++ + + + +   ++ +   +  +  +   I+      AL     NL ++  ++ L+G
Sbjct: 876  FGLALVFIYLVLASLYESFITPVTILFAIPPAISGAFFALALTREMLNLFSMIGLILLMG 935

Query: 732  YSVNDKVVVYD----RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
                + +++ D     +R+        +S  D I ++    L   + TS+A  +  +P+A
Sbjct: 936  LVAKNSILLVDYAMQAIRE------KGMSRNDAIYEAGLVRLRPILMTSLAMIMGTVPIA 989

Query: 788  VWGGSVIGS---FAIPMAFGIV 806
            +  G    S     I +  G++
Sbjct: 990  LGFGEAAKSRTAMGIAIIGGLI 1011



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 58/566 (10%), Positives = 156/566 (27%), Gaps = 49/566 (8%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            ++    +++L   I  + +L            +     +        LDL  G+ L    
Sbjct: 542  LKRPGIVLLLSLGIFILSILSLKLVKSTFLPANDQGEFLVT------LDLPPGTSL---- 591

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM------RQIQNKITLSFADSRFKENIADK 114
               +          + L+  + +  +   ++            + ++  DS+ ++    +
Sbjct: 592  ---NGTKQVADQVLEVLKK-IPEMEMIAVTIGKPDGGEPNAGTLAITLVDSKKRKLTTTQ 647

Query: 115  VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            V   ++ +              +     I          + +      S +++ +     
Sbjct: 648  VKDQIRELLKPFEYARPAVSDYSAVGGGIQYPFQLVIKGENLGEMEAYSKKVLTKLK--- 704

Query: 175  GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             +S+             +     D  +++ +                  +   F  R + 
Sbjct: 705  SLSDLADLDTDYRAGKPEYQIHLDNMKMQLVGVLPGVAGSELRYQIAGDEVSKFYDRGIE 764

Query: 235  DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                 +   + +               +       + +  +  G  R   + R       
Sbjct: 765  YVVKMRLRPDQRNLRMAYAQTKVPNIANKLIPLSAISVGKETAGPSRINRIDRART---- 820

Query: 295  AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                             I        G    +   I   +LR    P        +    
Sbjct: 821  -----------------IVINANLAPGGAVQDATRIADEILRKELPPPPGIRYNFQGQSE 863

Query: 355  DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD-FSIFLNVILTLALLSLLGATLT 413
            D             +A + + ++   +       V   F+I   +      L+L    L 
Sbjct: 864  DFKELLANIVLAFGLALVFIYLVLASLYESFITPVTILFAIPPAISGAFFALALTREMLN 923

Query: 414  LPSIAGIVLGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            L S+ G++L +GL   ++IL+ +   +    K  S   ++          I  +++  ++
Sbjct: 924  LFSMIGLILLMGLVAKNSILLVDYAMQAIREKGMSRNDAIYEAGLVRLRPILMTSLAMIM 983

Query: 473  ATVVL---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             TV +   F     +     I +   +++S    + +V ++  FI R+++       P  
Sbjct: 984  GTVPIALGFGEAAKSRTAMGIAIIGGLILSTVVTLVVVPSIFGFIDRFREWIESKFRPEY 1043

Query: 530  RFFLIPDCIAIQFMRARFWGVGISIL 555
                     A    + +F+    + +
Sbjct: 1044 DMNASMVQHAPSTNKQKFYEKEWASM 1069


>gi|257091810|ref|YP_003165451.1| CzcA family heavy metal efflux pump [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044334|gb|ACV33522.1| heavy metal efflux pump, CzcA family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1034

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/643 (13%), Positives = 190/643 (29%), Gaps = 40/643 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L  +   + L+I     + +  +D FP       +   +   GG          + V   
Sbjct: 14  LIVLGVSLLLIIYGALTVRKMPVDVFPDL--NKPMVTLMTEAGGM-------APEEVEQL 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +   + +              + + + FA          ++   L  V  +L   
Sbjct: 65  ITFPIESAMNGMPGVTRVRSVSGIGLSVVYIEFAWGSEIYRNRQQIAERLNLVREQLPQG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               +   ++     I+L     D      ++           ++       Q +     
Sbjct: 125 IVPQMGPISSIMG-EILLIALPADPDKVSPMQVREYADWVIRPRLLTIPGVAQVIAIGGQ 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q   E DP+RL+ L  T +++         +  G             N        ++
Sbjct: 184 VKQYRVEPDPARLQALAVTLSELEAALKNFGGNTAGGFVDAGGREYLIRNIGRSSRLEDL 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
               +               V  +                   P     DG     P + 
Sbjct: 244 QNQPVALRKGQVILLHQVASVSFA-------------------PAIKRGDGSFQGKPAVI 284

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
            ++       S   T      L  M R+    ++      R       S +  +      
Sbjct: 285 LSVQKQPTADSVALTRAIEKALTEMGRSLPQGVETPQFLFRQANFIEASVNNVEEALRDG 344

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A +V I+LF+ +   +   ++  +I +++++T  +    G ++   ++ G+ + IG  VD
Sbjct: 345 AIMVAIILFLFLANFRTTFISLTAIPVSLLITALVFHYFGLSINTMTLGGLAIAIGELVD 404

Query: 430 SNILVNERIREENRKNQSVF------CSLDMGFSRAYSTIFDSNITALIATVVLFF---F 480
             ++  E +    R+N+S+         +        S +  + +  ++  + LF     
Sbjct: 405 DAVVDVENVLRRLRENRSLPNPRSALEVIAAASKEVRSGVVYATLIVVLVFIPLFALPGI 464

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI-- 538
            G       +   +SIL SM  A++I   +  +++   K      + L +     D    
Sbjct: 465 EGRLFTPLGVAYIVSILASMAVAMTITPVLCYYLLPKMKHIDHGDSALVKKLKAWDERLL 524

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
              F R R    G +I  ++    + F          +G + + VL N    LS      
Sbjct: 525 NWSFDRGRLLLAGAAITVAVALASIPFFPKSFLPPFNEGTLTVSVLLNPGTSLSEANRLG 584

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              +   ++            R +         +  +E+  K 
Sbjct: 585 TQAEKLLLTVPEVTEVGRRTGRAELDEHAEGVHSSEIEVDLKA 627



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 34/203 (16%), Positives = 76/203 (37%), Gaps = 10/203 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           + A  + L  + + + + V        +    + S   + + +    I    +L      
Sbjct: 299 TRAIEKALTEMGRSLPQGVETPQFLFRQANFIEASVNNVEEALRDGAIMVAIILFLFLAN 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDR 743
           F+  F   ++T + + +  T   F  FG+  N   +  +   IG  V+D VV    V  R
Sbjct: 359 FRTTF--ISLTAIPVSLLITALVFHYFGLSINTMTLGGLAIAIGELVDDAVVDVENVLRR 416

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIP 800
           +R+N +      S  ++I  +  E     VY ++   +  +P+    G     F    + 
Sbjct: 417 LREN-RSLPNPRSALEVIAAASKEVRSGVVYATLIVVLVFIPLFALPGIEGRLFTPLGVA 475

Query: 801 MAFGIVVAASSSIFIAAPILLFI 823
               I+ + + ++ I   +  ++
Sbjct: 476 YIVSILASMAVAMTITPVLCYYL 498



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 85/236 (36%), Gaps = 7/236 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S+L +++ GD   Q         + +      S     + E+  +   + +P       E
Sbjct: 787  SSLATIEDGDGPNQIGRENTRRRIVISANSDGSDMSRIIAEIRAEIDRQPMPEGYFPLLE 846

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFFALF 714
                          ++ + +S   + + ++ R++       +   + L +  ++    + 
Sbjct: 847  GQFQAQEEAARLIAVLAL-VSLAMIYLVLYSRYRSAVLTAIVMGNVPLALVGSVVALWIS 905

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ A+   +TL G +  + ++       N+  +   +  R +I +   E L   + 
Sbjct: 906  GEPLSVAALVGFVTLTGIATRNGILKISHYI-NLCAFEDEVFGRKMIVRGSLERLTPVLM 964

Query: 775  TSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            T++ A  ++ P+ +     G  ++   A+ +  G++ +      +   +     + 
Sbjct: 965  TALVAAFALTPLLLAADAPGKEILHPVAVVIFGGLISSTLLDTLLTPVMFWLFGEK 1020


>gi|57652288|ref|YP_187358.1| MmpL efflux pump, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|151222663|ref|YP_001333485.1| MmpL efflux pump [Staphylococcus aureus subsp. aureus str. Newman]
 gi|161510752|ref|YP_001576411.1| resistance-nodulation-cell division acriflavin:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|258451494|ref|ZP_05699522.1| MmpL efflux pump [Staphylococcus aureus A5948]
 gi|262050118|ref|ZP_06022973.1| hypothetical protein SAD30_1308 [Staphylococcus aureus D30]
 gi|262051461|ref|ZP_06023683.1| hypothetical protein SA930_0391 [Staphylococcus aureus 930918-3]
 gi|282923185|ref|ZP_06330868.1| MmpL efflux pump [Staphylococcus aureus A9765]
 gi|284025572|ref|ZP_06379970.1| resistance-nodulation-cell division acriflavin:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus 132]
 gi|57286474|gb|AAW38568.1| MmpL efflux pump, putative [Staphylococcus aureus subsp. aureus
           COL]
 gi|150375463|dbj|BAF68723.1| MmpL efflux pump [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160369561|gb|ABX30532.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257860788|gb|EEV83608.1| MmpL efflux pump [Staphylococcus aureus A5948]
 gi|259160631|gb|EEW45653.1| hypothetical protein SA930_0391 [Staphylococcus aureus 930918-3]
 gi|259161800|gb|EEW46387.1| hypothetical protein SAD30_1308 [Staphylococcus aureus D30]
 gi|282593234|gb|EFB98232.1| MmpL efflux pump [Staphylococcus aureus A9765]
 gi|315197156|gb|EFU27496.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus CGS01]
 gi|329729218|gb|EGG65628.1| MMPL family protein [Staphylococcus aureus subsp. aureus 21189]
          Length = 829

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 73/592 (12%), Positives = 188/592 (31%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVVF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++ +A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFAVLSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
                                                                       
Sbjct: 342 KFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFASVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGIVQPNITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       V+  +   I+V  +++ G   +       A  +V A
Sbjct: 256 QVMKTETDYIKGIGLAIGTAGSAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VLSALTLLPALISIFHKRIKVNK 338


>gi|149909829|ref|ZP_01898480.1| AcrB/AcrD/AcrF family protein [Moritella sp. PE36]
 gi|149807161|gb|EDM67117.1| AcrB/AcrD/AcrF family protein [Moritella sp. PE36]
          Length = 1029

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/598 (13%), Positives = 176/598 (29%), Gaps = 43/598 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I   G+  +         + +FP     + +          + V     
Sbjct: 18  RPMLAIVLSLLIIIAGIYSS-----RSISVQQFPKIESTSLV---------INTVYTGAS 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V G++    + + S +        +     +K+T     +        ++T  L  +
Sbjct: 64  AEVVKGYITEPIERVASTVPGVDYVDSATIAGSSKVTAWLDLNYDSTAALAELTAQLSQI 123

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    +   +       ++ +    NI+       + +    R  I  +       +
Sbjct: 124 KFELPQGAQDPAISVVRADRVNALFY-LNIESGDLPRSKITDYFSRNVIPALSDIRGVQK 182

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    D  +L     + +++       N                 G    
Sbjct: 183 VTFEGGRDPAMRIWIDSDKLAVFNISASQVVTALRENNTIATL------------GYSKN 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
              +V++    L    A F+         +    +   +        I K          
Sbjct: 231 NRQRVDLMANTLLSTVAEFEQ--------LVIVSIDGTQIRLGDVATIEKGEVEGFADAR 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L                +     +        L           V          +    
Sbjct: 283 LDHDQTTFIGVWPLPGANEINIGDALYKKIDELNQHLPDQVRITVGYDGTLYMRDAIKEI 342

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      LV IV+ +++   +  +V   +I ++++  + ++SL+G +L L +I  IVL
Sbjct: 343 FTTLLETVFLVGIVVILMMGSLRSAMVPLITIPISILGAIGVMSLMGFSLNLLTILAIVL 402

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E +    R+ +    +  +   +    +    +T     V + F  G
Sbjct: 403 SIGLVVDDAIVVVENVARHMREGKGRVEAALISSRQLLVPVIAMTLTLAAVYVPIGFLSG 462

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 + FA T+ +++LIS   A+++   M  F++     +      ++ +F       
Sbjct: 463 LTGFLFKEFAFTLAIAVLISGLVAVTLSPIMSAFVLPQGGREGKFTLMINGYFERLQQQY 522

Query: 540 IQ-----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +      F           I   +     L +      ++ +G I + V A     L 
Sbjct: 523 VGALDVLFSWRAQVMFCAIIFSLLAVPFYLLSQHELAPVEDQGEINVVVTAPPEASLD 580



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 78/198 (39%), Gaps = 10/198 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A  + ++ + + + + V ++   +  +      +E+    +  V +  I +++ +    
Sbjct: 306 DALYKKIDELNQHLPDQVRITVGYDGTLYMRDAIKEIFTTLLETVFLVGIVVILMMG--- 362

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               A+  + T+ + I   +G  +L G   NL  + A++  IG  V+D +VV + +    
Sbjct: 363 SLRSAMVPLITIPISILGAIGVMSLMGFSLNLLTILAIVLSIGLVVDDAIVVVENV---A 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +         +    S  + L   +  ++      +P+    G        FA  +A  +
Sbjct: 420 RHMREGKGRVEAALISSRQLLVPVIAMTLTLAAVYVPIGFLSGLTGFLFKEFAFTLAIAV 479

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   ++   +PI+   
Sbjct: 480 LISGLVAV-TLSPIMSAF 496



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/246 (10%), Positives = 82/246 (33%), Gaps = 9/246 (3%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +   V +S        +    +   N          +       +A ++V ++  +
Sbjct: 770  VTTPSGDAVTVSSFAHVEPVVGPRLLGSFNQQKSFRIFAGVLPHITKEMALSQVEDIATE 829

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
             +     +     +  +  + +  +    +  +++  I ++ +   R      LG    L
Sbjct: 830  LLPAGYSIDYAGESREMRKEGNTLISVLMVSFIVVYFILVIQFNSFRDPLVVLLGC-APL 888

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L     L F        NL A   ++TL+G    + +++ +      ++    +     
Sbjct: 889  ALSGALMLAFLDFTS--VNLYAQIGLITLVGLITKNGILIVEFAN---QMQLQGMDKLSA 943

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +  + +  L   + T+ A  +   P+ +    G     S  + +  G+++    ++ +  
Sbjct: 944  VKAAASTRLRPILMTTAATVLGHFPLVLVTGAGAEARNSIGVILVAGMMIGTVFTLIVLP 1003

Query: 818  PILLFI 823
             +  ++
Sbjct: 1004 LLYQWL 1009


>gi|148255324|ref|YP_001239909.1| multidrug resistance protein mdtB [Bradyrhizobium sp. BTAi1]
 gi|146407497|gb|ABQ36003.1| Multidrug resistance protein mdtB [Bradyrhizobium sp. BTAi1]
          Length = 1042

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/570 (10%), Positives = 142/570 (24%), Gaps = 31/570 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     D +   +    +     +        +     ++I+L F   R  +    
Sbjct: 47  VTTQLPGASPDVIAALITAPLERQLGQIPSLAAMNSTSSFGVSQISLQFDLGRDIDGATQ 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +      L                 + V++   +          S         +
Sbjct: 107 DVQAAINAAAGVLPKSLPYPPTYAKVNPADAPVIT-LALTSDTVSLRAMSDMADTILAQR 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       +      +   +  + D +RL     +   +                     
Sbjct: 166 LSQVSGVGRVSVLGGLKPAVRVQADLARLAAYGISMEDLRAAIA---------------- 209

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
               G                   TAN           I                 I   
Sbjct: 210 ----GANVSGPKGSLDGAQQAYLITANDQIAAADAYRPIIIAYRNGSPVTIGDVATIVDG 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           L     G               +   +    +         L+          +      
Sbjct: 266 LENDRTGGWYQGVPAVILDIQRQPGANVIEVVRQIRAEIPKLQRTIPAGVKLAIVSDRTV 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +   LV +V+ + +   +  ++A  ++ L++I +  ++   G +L 
Sbjct: 326 TIRASVHDVQFTLVLSVVLVTLVVLLFLRSLRATIIAGVALPLSLITSFGVMYFAGFSLD 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +G G  VD  I++ E I       +S   +   G      T+    ++ +  
Sbjct: 386 NLSLMALTIGTGFVVDDAIVMIENIVRHMENGESAMNASLRGAREIGFTVISLTVSLIAV 445

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSI 523
            + L F     G   R FA+T+ ++++ S   ++++   M   +            + +I
Sbjct: 446 FIPLLFMSGLVGRMFREFALTLTIAVVTSAVVSLTLTPMMCSRLLKHASDEWVLPGLNAI 505

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                    +    +     R     V      +      +        +   G I    
Sbjct: 506 SRFIDRTVAVYHRSLLWVLDRQTETLVVTFATLAATLALYVVAPKGFLPLQDTGSITAVT 565

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            A   V  + ++   + +     +  +  G
Sbjct: 566 EAGPDVSFAEMQRRQQEVAAAIQADPDVVG 595



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSLRATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      S  +   +   E     +  +++     +P+    G V      FA+ +   
Sbjct: 411 VRHMENGESAMNASLRGAREIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAA 817
           +V +A  S+ +  
Sbjct: 471 VVTSAVVSLTLTP 483



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 65/181 (35%), Gaps = 6/181 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A +  ++ +      I    +I            + +      ++ + I + I + + ++
Sbjct: 817 ALSEAVDALHATENRIGMPGSIIGVYSGDAAEFAKSLAGQPWLLLAAVITIYIVLGVLYE 876

Query: 690 WYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            Y     I + +    +   L    LFG + ++  +  ++ L+G    + +++ D   + 
Sbjct: 877 SYIHPITILSTLPSAGVGAILALM-LFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALEA 935

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +      +  D I ++        + T++AA    LP+A+           P+   I+ 
Sbjct: 936 ERHENR--TPYDAIVQACLLRFRPIMMTTLAALFGALPLAI-ESGTGSELRFPLGISIIG 992

Query: 808 A 808
            
Sbjct: 993 G 993


>gi|90424058|ref|YP_532428.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
 gi|90106072|gb|ABD88109.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
          Length = 1042

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/570 (10%), Positives = 148/570 (25%), Gaps = 31/570 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     D +   +    +     +        +     ++++L F  +R  +    
Sbjct: 47  VTTQLPGASPDVIASLITAPLERQLGQIPSLSAMTSTSSFGVSQVSLQFDLNRDIDGATQ 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +      L  +              + VL+   +    S     S         +
Sbjct: 107 DVQAAINAAAGVLPKNLPYPPTYAKVNPADAAVLT-LALTSETSSMRAMSDIADTLLAQR 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       +      +   +  + D +RL         +                     
Sbjct: 166 LSQISGVGRVTVLGGLKPAVRVQADLARLAAYGIAMEDLRTAIA---------------- 209

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
               G                    AN           I                +I   
Sbjct: 210 ----GANVSGPKGSLDGAQQAYTIAANDQIAAADAYRPIIIAYRNGSPVTIGDVASIVDG 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           L     G               +   +    +         ++          V      
Sbjct: 266 LENDRTGGWFNGTPAVILDIQRQPGANVIEVVRQIREEIPKVQRAIPAGVKLTVVSDRTV 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +   LV +V+ + +   +  ++A  ++ L++I +  ++   G +L 
Sbjct: 326 TIRASVHDVQFTLLLSVILVTLVVLLFLRSMRATIIAGVALPLSLITSFGVMYFAGFSLD 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +G G  VD  I++ E I       ++   +   G S    T+    ++ +  
Sbjct: 386 NLSLMALTIGTGFVVDDAIVMIENIVRHMEDGETPMQAALDGASEIGFTVISLTVSLIAV 445

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-------KKMKSI 523
            + L F     G   R FA+T+ ++++ S   ++++   M   ++++         + +I
Sbjct: 446 FIPLLFMSGLVGRMFREFALTLTIAVVTSAVVSLTLTPMMCSRLLKHPGEERQIPGLATI 505

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                         +     R R   V   +  +      +        +     I    
Sbjct: 506 SGWIDRSAEAYHRSLLWVLQRQRATLVLTFVTVAATLALYVIAPKGFLPLQDTASITAVT 565

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            A   V  + +++   +      +  +  G
Sbjct: 566 EAGPDVSFAEMQARQAATADAIKADPDVTG 595



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 19/133 (14%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSMRATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      +         +E     +  +++     +P+    G V      FA+ +   
Sbjct: 411 VRHMEDGETPMQAALDGASEIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAA 817
           +V +A  S+ +  
Sbjct: 471 VVTSAVVSLTLTP 483



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 66/182 (36%), Gaps = 6/182 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    ++ VK   T I    +I            + +      ++ + + + I + + +
Sbjct: 817 EALGDAVDAVKSIETRIGMPGSIVGLYSGDAAEFSKSLAGQPWLILAALVTIYIVLGVLY 876

Query: 689 KWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           + Y     I + +    +   L    LFG + ++  +  ++ L+G    + +++ D   +
Sbjct: 877 ESYIHPITILSTLPSAGVGAILALM-LFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALE 935

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
                   +S  D I ++        + T++AA    LP+A+           P+   IV
Sbjct: 936 --AERHKGLSSYDAIVQACLLRFRPIMMTTLAALFGALPLAI-ESGTGAELRFPLGVSIV 992

Query: 807 VA 808
             
Sbjct: 993 GG 994


>gi|194336220|ref|YP_002018014.1| acriflavin resistance protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194308697|gb|ACF43397.1| acriflavin resistance protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 1030

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 57/450 (12%), Positives = 121/450 (26%), Gaps = 21/450 (4%)

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
           +    +E  + ++       +     +  IT+ F      +  A  V   +    S+L  
Sbjct: 20  VAPPLEESINGVENMTYMTSTSANDGSLSITVFFKQGTNPDQAAVNVQNRVSQATSRLPA 79

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
           +  +  + T   +   I+L            I          +D +       Q      
Sbjct: 80  EVVQIGVSTIKRQNSQIMLINLASSSKQYDQIFLQNYAKINIVDDLARVPGVGQVSVYGN 139

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           +   +     P ++     T  ++S      N       FG                   
Sbjct: 140 MDYSMRIWLRPEQMAAYKVTPQEVSAAIQSQNLEAAPGSFGENSGESMQYVMKYKGKNA- 198

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
                                  +                 +                  
Sbjct: 199 ---------------FPGDYEDIVIRANSDGSLLKLGDISRVEFGAYRYTVNTRANGEPA 243

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                      + N                        +   +      S    + T   
Sbjct: 244 VVLAVYQAPGSNANKVETELRKALEKASLSLPAGISYSIPFSSKKVVDESIQQVQHTLIE 303

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              LV +V+F+ +   +  ++   ++ + +I T   ++L G ++ + ++ G+VL IG+ V
Sbjct: 304 AFLLVFLVVFLFLQDLRSTIIPAIAVPVAIIGTFFFMNLFGFSINVLTLFGLVLAIGIVV 363

Query: 429 DSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           D  I+V E +  +  +          S     + A  TI     +  +    L    G  
Sbjct: 364 DDAIVVVEAVHAKMEQKNYPAKVATVSAMREITTAIVTITLVMASVFLPVGFLAGSTGVF 423

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFI 514
            R FA T+ ++ILIS   A+++  A+    
Sbjct: 424 YRQFAFTLAIAILISAVNALTLSPALCALF 453



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 71/249 (28%), Gaps = 10/249 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 V ++ + +         +   N     +    ++       A   V E+ +  + 
Sbjct: 759  STGSMVPVTSLITLKRVYGTESVDHFNLFNAVSVNAVVKPGYSTGQAIKAVEEISRTSLP 818

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                      +          +     + ++       +   +   +   L  + ++   
Sbjct: 819  AGFTYDWKGQSREELESSGGLI----FIFMLSLLFVYFLLAALYESYLLPLAVMFSIPTG 874

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +        L GIE N+    AV+ LIG    + +++ +     ++      S      +
Sbjct: 875  LLGVFVGIKLAGIENNIYVQVAVIMLIGLLAKNAILIVE---YALQRRVAGKSLSASAIE 931

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPIL 820
                 L   + TS+A    +LP+    G               G+ V     IF+   + 
Sbjct: 932  GAKARLRPILMTSLAFVAGLLPLLFVSGPAAQGNHSIGAAAIGGMFVGMLLGIFVVPVLF 991

Query: 821  LFIYDWRAK 829
            +     + +
Sbjct: 992  VTFQYLQER 1000



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 62/156 (39%), Gaps = 15/156 (9%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +     + + I  T  F  LFG   N+  +  ++  IG  V+D +VV + +    
Sbjct: 318 DLRSTIIPAIAVPVAIIGTFFFMNLFGFSINVLTLFGLVLAIGIVVDDAIVVVEAVH--A 375

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVI--GSFAIPMAF 803
           K+   +   +     ++ E     V   +   ++ + +    + G + +    FA  +A 
Sbjct: 376 KMEQKNYPAKVATVSAMREITTAIVT--ITLVMASVFLPVGFLAGSTGVFYRQFAFTLAI 433

Query: 804 GIVVAASSSIFIAAPILLFI------YDWRAKNARI 833
            I+++A +++ ++  +           D  AK+ ++
Sbjct: 434 AILISAVNALTLSPALCALFLTNLHDADGEAKHKKL 469


>gi|224437391|ref|ZP_03658362.1| preprotein translocase subunit SecD [Helicobacter cinaedi CCUG
           18818]
 gi|313143854|ref|ZP_07806047.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128885|gb|EFR46502.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 591

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 140/459 (30%), Positives = 234/459 (50%), Gaps = 30/459 (6%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
           ++  +  L+     +RS L + G+   S+ Q   + I +     +  E    +    +  
Sbjct: 140 EEIKDSALKQAIGTIRSRLDEFGLAEPSVTQQGKDNILVQLPGIKSVEE-EQRARDLIAK 198

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                    +   +       + I+ S+    +     +  +   ++   +Q+       
Sbjct: 199 -----PAHLQMMAVDEERNARVGIM-SELEAQKYNDVILPFANSALQTLENQLTSL---- 248

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                             ++L  L  T +K S  K    +  +     +   +       
Sbjct: 249 -----------------QAQLELLNNTDSKSSQKKENLVSEIERLNAQIESQKARGDQVI 291

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L++    + G  L  A A FD    +P+V  S D  GAR F + +  N+GK +A+VLDG+
Sbjct: 292 LLKAVPILDGSMLTDARAAFDQNN-QPIVSFSLDSKGARIFGDFSGANVGKRMAIVLDGK 350

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V +APVI + I  G  QISG F++E A  LA  L++G+LP  + ++E+R+VG  LG DSI
Sbjct: 351 VYSAPVIRERIGGGSGQISGGFSVEEATDLAIALKSGALPAPMEVLEKRSVGPSLGEDSI 410

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A+++G VL+VLFM++ Y   G++A  ++F+N+IL +A+++  GA+LTLP +AGIV
Sbjct: 411 KASLIALLSGFVLVVLFMMIYYSLAGVIAVVALFVNIILIIAVMACFGASLTLPGMAGIV 470

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+NI++NERIRE  R    +  S++MG++ A   IFDSN+T LIA ++L+ FG
Sbjct: 471 LTVGMAVDANIIINERIREALRGGFGIAKSIEMGYANASRAIFDSNLTTLIAAILLYAFG 530

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            GA++GFAITMG+ I  S+ TAI     +   ++     
Sbjct: 531 SGAIKGFAITMGIGITASILTAIVGTHGIYQAMMGRIIK 569



 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 80/201 (39%), Gaps = 4/201 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             +      +  K   +     +     VGP +  + I+  ++ ++   + +++++ I +
Sbjct: 373 SVEEATDLAIALKSGALPAPMEVLEKRSVGPSLGEDSIKASLIALLSGFVLVVLFMMIYY 432

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                + A+  L ++I   +   A FG    L  +A ++  +G +V+  +++ +R+R+ +
Sbjct: 433 SL-AGVIAVVALFVNIILIIAVMACFGASLTLPGMAGIVLTVGMAVDANIIINERIREAL 491

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +           I+            +++   I+ + +  +G   I  FAI M  GI  +
Sbjct: 492 RG---GFGIAKSIEMGYANASRAIFDSNLTTLIAAILLYAFGSGAIKGFAITMGIGITAS 548

Query: 809 ASSSIFIAAPILLFIYDWRAK 829
             ++I     I   +     K
Sbjct: 549 ILTAIVGTHGIYQAMMGRIIK 569


>gi|124003613|ref|ZP_01688462.1| acriflavin resistance plasma membrane protein [Microscilla marina
           ATCC 23134]
 gi|123991182|gb|EAY30634.1| acriflavin resistance plasma membrane protein [Microscilla marina
           ATCC 23134]
          Length = 1165

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 59/565 (10%), Positives = 160/565 (28%), Gaps = 37/565 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             Q   + +P  +  N I +G    G        +  + +   +    ++    L     
Sbjct: 41  YVQMPKESYPEIVIPN-IYVGTPYPG--------NSPNDMESLVTRPIEKELKSLTGVKK 91

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK-KNLLVTTTEKEISI 145
              +  Q  + + + F            V   +    S+L  D      +      ++ I
Sbjct: 92  ISSTSIQGYSTVIVEFNPDVAIPKALQDVKDAVDKAKSELPTDLPVDPNVSDINLSDLPI 151

Query: 146 VLSQNNIDQ-VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +       +    +  E+         D+        +         ++  + D  +L  
Sbjct: 152 MYVNVASKKGGKKYKREELKVYAEYLEDEFEKLSQISKVDIKGIQEREVRIDVDLFKLEG 211

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
            +     ++                             V     ++           + +
Sbjct: 212 RMLNFNDIANAIR--------------------QENVTVSGGDFLAEDFRKSIRIVNEFE 251

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
           +   + ++          +      +             +   +     S ++  +    
Sbjct: 252 SMNDIRNVIIKNEDGNIVYLRDVAQVRDSYKEPTSFARSSGNTVVTLNVSKRSGENLLIA 311

Query: 325 IETAGI--LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            +        A  +          +            S  + +       +++ + +  +
Sbjct: 312 ADEIKQIIKDAQDKKKLPADLDISITNDQSRDIKSMVSNLQNSIISGVI-LVVAVLLFFM 370

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             +  L    +I L++ ++  LL   G T+ +  +  ++L +G+ VD+ I+V E I    
Sbjct: 371 GLRSALFVGIAIPLSMFISFILLGTAGVTMNMMVLFSLILALGMLVDNGIVVIENIYRLL 430

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILIS 499
           ++   +  ++  G       I  S  T +IA + L F+G   G  +R   IT+ + +  S
Sbjct: 431 QEGYPLKRAVKEGVGEIALPIIASTATTVIAFLPLAFWGGIMGQFMRFLPITLIVVLSAS 490

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
           +  A+ I  A+ +   +    K+          ++   ++I       + +   +     
Sbjct: 491 LIVALVINPAIAMIFAKLDDGKNHINKRWLIIAIVLVVLSIPAYFVGNYTLTNLLGIVGS 550

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVL 584
            I L           F+    + + 
Sbjct: 551 FILLNMFVLTPVSRWFQNKALVVLE 575



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/299 (10%), Positives = 83/299 (27%), Gaps = 10/299 (3%)

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                       R   V +S    +          +N          + +       + +
Sbjct: 212 RMLNFNDIANAIRQENVTVSGGDFLAEDFRKSIRIVNEFESMNDIRNVIIKNEDGNIVYL 271

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                      + +          +     +           E+ +             +
Sbjct: 272 RDVAQVRDSYKEPTSFARSSGNTVVTLNVSKRSGENLLIAADEIKQIIKDAQDKKKLPAD 331

Query: 654 TEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            +I         I+  +      +I   I ++  +        AL     + L +  +  
Sbjct: 332 LDISITNDQSRDIKSMVSNLQNSIISGVILVVAVLLFFMGLRSALFVGIAIPLSMFISFI 391

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                G+  N+  + +++  +G  V++ +VV + +    +L       +  + + + E  
Sbjct: 392 LLGTAGVTMNMMVLFSLILALGMLVDNGIVVIENI---YRLLQEGYPLKRAVKEGVGEIA 448

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              + ++    I+ LP+A WG   G  +    I +   +  +   ++ I   I +    
Sbjct: 449 LPIIASTATTVIAFLPLAFWGGIMGQFMRFLPITLIVVLSASLIVALVINPAIAMIFAK 507



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 103/286 (36%), Gaps = 36/286 (12%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
               +    N+     +  S++ S+            + + ++ +     +      ++  
Sbjct: 848  NKSITFRNNKGQIRQIPISSVASVNDTSSLGSVKRKDLDRVITIFSNVKEGYNANEIVAT 907

Query: 638  VKKKITEIVPLSTIQNTEIVGPKI-SRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALG 695
            +K  I++      I   +  G +   ++     ++ ++++   + + I  +F      L 
Sbjct: 908  MKGLISDYDIPDGIDRPKFTGEQEEQQKSAEFLMMALLLAVFGVFLIIVTQFNSLSAPLV 967

Query: 696  AITTLILDITKTLGFFALFGIEFN-LTAVAAVLTLIGYSVNDKVVVYD--RMRKNMKLYT 752
             +++++           +F +EF  L     +++L G  VN+ +V+ D   + +N +   
Sbjct: 968  IMSSVLFSTIGVFLGLVIFRMEFVILMTGIGIISLAGVVVNNAIVLIDYTNLLRNRRKAE 1027

Query: 753  TSIS---------FRDLIDKSINETLGRSVYTSMAAFISVLPMAV--------------- 788
              +          F   I ++  + L   + T++   + ++P+AV               
Sbjct: 1028 LGMDEEDHLPNSEFLQCIAEAGKKRLRPVLLTAITTVLGLIPLAVGFNIDFFGYITEFKP 1087

Query: 789  ---WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               +GGS        +  + FG+  A   ++ I  P++  + D   
Sbjct: 1088 NIYFGGSNTAFWGPMSWTVIFGLTFATFLTLVIV-PVMYLLTDRLK 1132


>gi|302528168|ref|ZP_07280510.1| MMPL domain-containing protein [Streptomyces sp. AA4]
 gi|302437063|gb|EFL08879.1| MMPL domain-containing protein [Streptomyces sp. AA4]
          Length = 745

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 77/614 (12%), Positives = 181/614 (29%), Gaps = 60/614 (9%)

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
           P      D  G      V       P    +        V      +           E 
Sbjct: 98  PEGRKVTDPAGQAAVESVVGKLRSAPKVAGVVDPFQARSVSPDGRVALAQVSYQVKGFEL 157

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           +      L A     K         G  +        T  +   +  +VL +        
Sbjct: 158 SDSDRQALLATGDHAKQLGYRVEYGGDAVQGIPATGATEGLGVAVAAVVLIITFGSLLAA 217

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPS---IAGIVLGIGLAVDSNILVNERIREENRK 444
            +   +  + V + +A + L   ++ L S   +  +++G+ + +D  + +  R R E  +
Sbjct: 218 GIPLLTALVGVGVGMAGIMLASGSMELNSNTPVLALMIGLAVGIDYALFIVSRYRHELAE 277

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            +    +       A S +  + +T +IA   L   G   +    +    ++++++  A+
Sbjct: 278 GREPEEAAGRAVGTAGSAVVFAGLTVVIALAGLTVVGIPFLGQMGVAAAATVVVAVLIAL 337

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           +++ A++ F         I +   +      +  A    R R   +  ++          
Sbjct: 338 TLLPAVLGFAGARVARSKIRVRRRTEGPTHGERWARFVARHRVPVLLTALAGLAVVAVPA 397

Query: 565 FTHG-----------------------LNYGIDFKGGIQLGVLANRPVDLSVVRSN---- 597
            +                           +G    G + + V      +   V+      
Sbjct: 398 LSMQLGLPNDSTAAPDTTQRKAYDLVSAGFGEGANGPLLVVVDTGPNRNPDAVKQAAADI 457

Query: 598 --LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK----ITEIVPLSTI 651
             L  +        N  G+   L  +      S     ++  ++ +      +      +
Sbjct: 458 GRLPDVAAVTPPRVNPAGDTALLTVIPKSGPSSTQTEDLVSAIRAQSAPLQDKTGGSLAV 517

Query: 652 QNTEIVGPKISRELIRKGI--VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                    +S++L    +  + +I+    +L+ +  R      L A    +  +  T G
Sbjct: 518 TGQTAANIDVSQKLSDAMLPYLALIVGLAFVLLMLVFR-SVVVPLKATLGFLGSVVATFG 576

Query: 710 FFA----------LFGIEFNLTA-----VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                        L G+           +  +  L G +++ +V +  RMR+    +   
Sbjct: 577 AVVAVFQWGWLTGLLGVASTGPIMSMLPILLIGVLFGLAMDYQVFLVTRMREE---HVHG 633

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-GSVIGSFAIPMAFGIVVAASS-S 812
              ++ +         R V  +    ISV    V    ++I S    +AFG+++ A    
Sbjct: 634 AEPQEAMVTGFRH-GARVVVAAALIMISVFAGFVLAESTLIQSIGFALAFGVLIDAFVIR 692

Query: 813 IFIAAPILLFIYDW 826
           + I   ++  +   
Sbjct: 693 MTIVPAVMSLLGRR 706


>gi|298244053|ref|ZP_06967860.1| acriflavin resistance protein [Ktedonobacter racemifer DSM 44963]
 gi|297557107|gb|EFH90971.1| acriflavin resistance protein [Ktedonobacter racemifer DSM 44963]
          Length = 1059

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 75/671 (11%), Positives = 197/671 (29%), Gaps = 17/671 (2%)

Query: 18  GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV-LEVDEDDFVNGFLQMYSDE 76
           GL+  +   L        P    K  +   +DL   + +          V   +    ++
Sbjct: 13  GLMALVTIVLLLIGGLLIPQL--KQELYPSIDLPVVTMVTTYAGASPSAVEKEVTNPLEQ 70

Query: 77  LRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLV 136
                           +  + I++++            ++  L  V ++L       L  
Sbjct: 71  SIQGTPGLQQYTSLSNEGSSIISVTYDYGTNIAQARQDLSQRLSAVQAQLPKGVTPTLQS 130

Query: 137 TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196
            +T     I L  ++         + +  + +  +  +    +  +   +      +   
Sbjct: 131 YSTSDIPIISLGVSSSQAPQ----DLAQALKQIVVPDLQGIPNVARVDLTGARATIVTIT 186

Query: 197 QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
            DP +++    T  ++       N +        + L              ++  + ++ 
Sbjct: 187 LDPQKMQGAGVTFEQVQTALQADNVTLPAGSLVDQDLSRPIRVGNTFNSLQDLKDLVISA 246

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316
           + A        P    S     ++        ++ + L        +          +  
Sbjct: 247 SRATG-----SPTSSDSSLATTSQATRLSDIADVQQGLEPETSLSHINGAPSVGISLTKT 301

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
           +  +      T     A L          +           S +       + A   ++V
Sbjct: 302 SAGNSLTISHTIHNHLADLEKRLGHNTKIMTVFDQAPFIESSMTGLIHEGLLGALFAIVV 361

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           + + +   +  LVA  SI L+V++ L  L +   TL + ++ G+ + +G  +D +I+V E
Sbjct: 362 ILVSLFSLRSTLVAAVSIPLSVVVALIALWIGNYTLNILTLGGLTIAVGRVIDDSIVVLE 421

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMG 493
            I       +    ++  G     S I  S +T +   + L F  G      R F+IT+ 
Sbjct: 422 NIYRHLHLGEEKRSAVYAGVREVSSAITASTLTTVAVFLPLGFVNGEVGVLFRPFSITVA 481

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS-RFFLIPDCIAIQFMRARFWGVGI 552
           +++L S+  A++IV  +  + +R  K + +  +                ++  +      
Sbjct: 482 VALLASLLIALTIVPVLAYWFLRVPKPEFVPASRPQGSSVERCYIPIAAWITKKRNSGLT 541

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL-SVVRSNLESLQIGDISFQNF 611
            +   +            +     G  Q     N+ + + + ++     ++  +     F
Sbjct: 542 ILAAIVLLDATFVLIPTLHTTFLDGSSQNNFRLNQELPIGTSIQKAQGEVKKVENILARF 601

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
              + +   +      S +             +       Q        +  ++      
Sbjct: 602 PEIQTYQATVAQSSFFSSSAPNSAVYNVVTDKDTDQNDLQQRVINSLHLVDSKITLSSRD 661

Query: 672 GVIISAIAMLI 682
               + + + I
Sbjct: 662 STSDTTLLINI 672



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 83/232 (35%), Gaps = 11/232 (4%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
               + DG +   +  Q    D  A    ++    K+      S            S    
Sbjct: 798  QVTHLDGTRTATISAQVTSDDVGATGADVQSRISKLKLPGGASYNFGGVKQRQDDS---F 854

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             K  + ++ +   +   + I  +     L  + ++    T ++          ++T++  
Sbjct: 855  LKLGIAMLAAICIVYFIMAITLRSLLQPLILLVSIPFAATGSVLLMLFTNTTLSVTSLIG 914

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +L LIG  V + +V+ DR+ +        +  R  + +  +E     + T+ A  +++LP
Sbjct: 915  LLMLIGIVVTNAIVLIDRVNQYR---ERGLDARSAVIRGSSERARPILMTASATILALLP 971

Query: 786  MAV----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            MA+        +  S +I +  G+  +   ++ +   + +     R +   +
Sbjct: 972  MALGLSDSSAVMSKSLSIVVIGGLTSSTVLTLLLVPALYMVAEGMRERRKPV 1023



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/197 (13%), Positives = 62/197 (31%), Gaps = 6/197 (3%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           S  N        +              +   +      +   + I       P I   + 
Sbjct: 286 SHINGAPSVGISLTKTSAGNSLTISHTIHNHLADLEKRLGHNTKIMTVFDQAPFIESSMT 345

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                G++ +  A+++ +   F     L A  ++ L +   L    +     N+  +  +
Sbjct: 346 GLIHEGLLGALFAIVVILVSLFSLRSTLVAAVSIPLSVVVALIALWIGNYTLNILTLGGL 405

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
              +G  ++D +VV + + +++ L     S    +   + E       +++      LP+
Sbjct: 406 TIAVGRVIDDSIVVLENIYRHLHLGEEKRS---AVYAGVREVSSAITASTLTTVAVFLPL 462

Query: 787 AVWGGSV---IGSFAIP 800
               G V      F+I 
Sbjct: 463 GFVNGEVGVLFRPFSIT 479


>gi|326791642|ref|YP_004309463.1| protein-export membrane protein SecD [Clostridium lentocellum DSM
           5427]
 gi|326542406|gb|ADZ84265.1| protein-export membrane protein SecD [Clostridium lentocellum DSM
           5427]
          Length = 505

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 31/178 (17%), Positives = 77/178 (43%), Gaps = 4/178 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +   VG K+  + +   ++   I  + +LI++   ++    + A   L+L +   +    
Sbjct: 318 SATGVGAKLGIDALNSSLLAGAIGFVIILIFMVAMYRMC-GVAADIALVLYVGLMVLTLT 376

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                  L  +A +L  IG +V+  V+++ R+++ + L       R  +D   ++     
Sbjct: 377 ALNATLTLPGIAGILLSIGMAVDANVIIFARIKEELAL---GRGVRAAVDAGFSKAFSAI 433

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +  ++   I+ + +  +G  +I SFA  +  GIV++  +++ I   +L        + 
Sbjct: 434 LDGNVTTMIAAVVLYFFGTGLIKSFATTLMIGIVISMFTALVITRSLLKAFVGMDLRK 491



 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 127/378 (33%), Positives = 203/378 (53%), Gaps = 26/378 (6%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
             + +  A+E +  +I++R+D  G +E+ +   G+ R+ + +PG +DP +    +G    
Sbjct: 148 SAEELRSAMEAAQALIQKRLDAKGYTEAEVAIEGTKRLRVDIPGVEDPQKAVDEIGAAGM 207

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F                            +     ++G ++  A A  + +T +  V 
Sbjct: 208 LRF--------------------------IDMSGNEIVTGKNVKSARAGQNSQTGEYFVG 241

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           I  D  G + F + T +NIG  + ++LD  VL+ P I+  I  G   ISGNFTIE A  L
Sbjct: 242 IEMDSEGTKLFSDFTANNIGSTILIMLDETVLSMPQISAHITDGSGIISGNFTIEEAQDL 301

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A  + AG+LP  L  +    VGA LG D++     A   G V+I++FM+ +Y   G+ AD
Sbjct: 302 ANGINAGALPFTLEAISATGVGAKLGIDALNSSLLAGAIGFVIILIFMVAMYRMCGVAAD 361

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++ L V L +  L+ L ATLTLP IAGI+L IG+AVD+N+++  RI+EE    + V  +
Sbjct: 362 IALVLYVGLMVLTLTALNATLTLPGIAGILLSIGMAVDANVIIFARIKEELALGRGVRAA 421

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           +D GFS+A+S I D N+T +IA VVL+FFG G ++ FA T+ + I+ISMFTA+ I R+++
Sbjct: 422 VDAGFSKAFSAILDGNVTTMIAAVVLYFFGTGLIKSFATTLMIGIVISMFTALVITRSLL 481

Query: 512 IFIIRYKKMKSIDINPLS 529
              +     K      + 
Sbjct: 482 KAFVGMDLRKPSFYTNIK 499



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 6/88 (6%)

Query: 37  SAMPKNRISLGLDLRGGSHLVLEVDED-----DFVNGFLQMYSDELRSFLKKEGIGVFSM 91
                NRI LGLDL+GG ++V E + +     + +   ++     ++  L  +G     +
Sbjct: 118 GFFESNRIKLGLDLQGGVNIVYEPELEGDMSAEELRSAMEAAQALIQKRLDAKGYTEAEV 177

Query: 92  RQIQN-KITLSFADSRFKENIADKVTLF 118
                 ++ +        +   D++   
Sbjct: 178 AIEGTKRLRVDIPGVEDPQKAVDEIGAA 205


>gi|269121337|ref|YP_003309514.1| protein-export membrane protein SecD [Sebaldella termitidis ATCC
           33386]
 gi|268615215|gb|ACZ09583.1| protein-export membrane protein SecD [Sebaldella termitidis ATCC
           33386]
          Length = 406

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 137/380 (36%), Positives = 223/380 (58%), Gaps = 22/380 (5%)

Query: 140 EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDP 199
              + +   + +  ++    +++  EI+++R+D +G+SE  IQ+ G +R++++L G +D 
Sbjct: 36  GTSVVLEAQEEDGKKLQPDTMDKVREIVQRRVDGLGVSEPVIQKSGENRLIVELAGVKDA 95

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA 259
                L+GTTAK+ F     +NS    +     ++++   Q                   
Sbjct: 96  QEAIDLIGTTAKLEFKIKTGDNSYGPTVLDGSAIKNAYVQQDQFGK-------------- 141

Query: 260 NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQI 319
                   P++    ++ GA +F E+TR N+GK LA++LDG+  +APVI   IP GK  I
Sbjct: 142 --------PMIGFELNDEGAVKFAEITRTNMGKQLAIMLDGKEQSAPVIQSEIPGGKGSI 193

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           SG+FT E+A  LA +L+AG+LP+ + I+E R+V A LG++SI     A +  LVL+ LFM
Sbjct: 194 SGSFTYESAQNLANLLKAGALPVNIQIMETRSVDASLGAESIKATKMAAMIALVLVSLFM 253

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR 439
           + +Y   G VAD ++ +  ILT  L+  +G TLTLP IAG +L +G+AVD+N+++ ERI+
Sbjct: 254 LAVYRVAGFVADLALCVFGILTAGLMCAIGTTLTLPGIAGFILSLGMAVDANVIIFERIK 313

Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
           +E  + +     +D GF+RA+  I D NIT L+ T+VLFFFG G VRGFA+ + + +L+S
Sbjct: 314 DEIMEGKRFQDCIDDGFNRAFPAILDGNITTLLITMVLFFFGTGPVRGFAVILTIGVLVS 373

Query: 500 MFTAISIVRAMMIFIIRYKK 519
           MFTAI I + ++   +    
Sbjct: 374 MFTAIFITKIIVKIFVNIFH 393



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V        ++ +     L   + S      E               +   +  ++K   
Sbjct: 154 VKFAEITRTNMGKQLAIMLDGKEQSAPVIQSEIPGGKGSISGSFTYESAQNLANLLKAGA 213

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +           V   +  E I+   +  +I+ + + +++   ++      A   L +
Sbjct: 214 LPVNIQIMETR--SVDASLGAESIKATKMAAMIALVLVSLFMLAVYRV-AGFVADLALCV 270

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
               T G     G    L  +A  +  +G +V+  V++++R++  +        F+D ID
Sbjct: 271 FGILTAGLMCAIGTTLTLPGIAGFILSLGMAVDANVIIFERIKDEIMEGKR---FQDCID 327

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              N      +  ++   +  + +  +G   +  FA+ +  G++V+  ++IFI   I+  
Sbjct: 328 DGFNRAFPAILDGNITTLLITMVLFFFGTGPVRGFAVILTIGVLVSMFTAIFITKIIVKI 387

Query: 823 I 823
            
Sbjct: 388 F 388



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 4/86 (4%)

Query: 42  NRISLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NK 97
           N I+LGLDLRGG+ +VLE    D        +    + ++  +   G+    +++   N+
Sbjct: 25  NPINLGLDLRGGTSVVLEAQEEDGKKLQPDTMDKVREIVQRRVDGLGVSEPVIQKSGENR 84

Query: 98  ITLSFADSRFKENIADKVTLFLQGVN 123
           + +  A  +  +   D +    +   
Sbjct: 85  LIVELAGVKDAQEAIDLIGTTAKLEF 110


>gi|226950492|ref|YP_002805583.1| protein-export membrane protein SecD [Clostridium botulinum A2 str.
           Kyoto]
 gi|226844254|gb|ACO86920.1| protein-export membrane protein SecD [Clostridium botulinum A2 str.
           Kyoto]
          Length = 422

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 80/198 (40%), Gaps = 4/198 (2%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +    +    K   +           VG  +    +   +   ++    + +
Sbjct: 207 VITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVSLVFL 266

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + ++    L A   L L I   L  F+       L+ +A  L  IG +V+  V++++
Sbjct: 267 FMIVYYRVP-GLLADIALALYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFE 325

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   T  S +  ++   +  L   + +++   I+ + +   G   +  FA+ + 
Sbjct: 326 RIREELK---TGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLM 382

Query: 803 FGIVVAASSSIFIAAPIL 820
            GI+++  ++I +   +L
Sbjct: 383 IGIILSMFTAIVVTRLLL 400



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 227/385 (58%), Gaps = 26/385 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +L +   D+V    +++++E+I  R++++G+SE+T+ R G  RI I++PG+ +   +   
Sbjct: 61  MLEEIQADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDS 120

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T ++ F                             +    ++G  +  ATA  + + 
Sbjct: 121 VGKTGELKF--------------------------VGPDKSTILTGKDVKDATAYINQED 154

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           + P V +  +E G ++F + T+  IG+P+A+ +D   LT PV+   I +GKA I+G+ +I
Sbjct: 155 NSPTVGLDLNESGTKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSI 214

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A ++++G+LP+ +  VE R VGA LG++++     A V G+ L+ LFMIV Y  
Sbjct: 215 EEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVSLVFLFMIVYYRV 274

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD ++ L ++L LA  S + ATLTL  IAG +L IG+AVD+N+L+ ERIREE +  
Sbjct: 275 PGLLADIALALYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFERIREELKTG 334

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +L+ G+ RA S+I DSNIT +IA +VL+  G GAV+GFA+T+ + I++SMFTAI 
Sbjct: 335 KSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIV 394

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSR 530
           + R ++        + S+    + R
Sbjct: 395 VTRLLLKLGYDIGILNSLACFRVKR 419



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 75/250 (30%), Gaps = 6/250 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++N    ++   +  + + +          +  +        I+ GLDL+GG  ++ E+ 
Sbjct: 7   KSNKGKSVIIFTLLVVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQ 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D      +    + +   + K G+   ++ R+ Q +I +        + + D V    +
Sbjct: 67  ADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDSVGKTGE 126

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                  V P K+ ++T  + + +        +      ++ +    ++  D        
Sbjct: 127 LKF----VGPDKSTILTGKDVKDATAYINQEDNSPTVG-LDLNESGTKKFADATKKFIGQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      +  P  Q      + + T +K         N  K     V          
Sbjct: 182 PIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTV 241

Query: 241 YLVEDKVEIS 250
                   + 
Sbjct: 242 GATLGANALD 251


>gi|194367384|ref|YP_002029994.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
 gi|194350188|gb|ACF53311.1| acriflavin resistance protein [Stenotrophomonas maltophilia R551-3]
          Length = 1019

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/594 (12%), Positives = 157/594 (26%), Gaps = 24/594 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L     + +   +    +     L        +  Q Q +I L F   R  +  A 
Sbjct: 51  VSASLPGASPESMAATVATPLERALGSLPGISRIDSASTQGQTQIELKFVLGRDIDEAAR 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +     +L                 + +L    +        +           +
Sbjct: 111 EVQAAINLARGQLPSGMPGMPQYRKVNPSQAPIL-ALALTSDTRSPGQLYDLASTVLAQK 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       +       L  +    DP+ L         ++      N  +     G    
Sbjct: 170 LSQVPGVGEVQVGGSALPAVRVSLDPNALNHAGLALEDVAQAIGRANAMRPLGAVGDDRQ 229

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           +        +    +                      +++      R         +   
Sbjct: 230 QWQLEAPLQLRQAAQ--------------------YRELALKVSDDRTLRLGDVAAVADG 269

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +                 I S +   +   T++        L A         +      
Sbjct: 270 VEDRYASGFHNERPAVLLIVSRQPGANIIATVDAIQAQLPQLHALLPSSVDMRLVMDRSP 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +    + T  +   LV++V+   + + +  LV   +I + +  TLAL++L+G +L 
Sbjct: 330 VIRATLHEAELTLVLAIVLVVLVVLGFLGHWRAALVPSVAIPVVLFGTLALIALMGFSLN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  +++   L VD  I+V E I          + +   G S   +T+   N+   + 
Sbjct: 390 TLSLMALIVAAVLVVDDAIVVLENIARHRELGADRWQAAVRGASEVGATLLSMNVALAVV 449

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            V + F   F     R F++T+  ++ +S+  A+S+V  +   +      +       S 
Sbjct: 450 FVSILFLDDFVERLFREFSLTLVAAMTVSVLVALSLVPMLCARLFVDAAQQPSRWQRGSN 509

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                   A               L +  ++  L T             Q          
Sbjct: 510 ALFERVRSAYLRTLQASLRRLRWPLLAFVAVIALNTWLFQQVPKGIVPKQDTAQLRGFAR 569

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                S        D   +    +      + Y  G +      + +  K + E
Sbjct: 570 GDDGLSFQAMQPKIDAYRKLLLSDPAIEDIIGYIGGSNGVNNAFIMIKMKPLAE 623



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 104/239 (43%), Gaps = 7/239 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ S + G    + +  E+   + +++     +   +  + +   +++++   ++Q   
Sbjct: 784  SSIASWRYGMAPDRVYHSEQFASIWIEFALAPGMGLEQATQAIDGAMSKLMLPRSVQGKL 843

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                    +L  + +  V+ + +A+ + + I ++ +   L  ++TL       L    LF
Sbjct: 844  SGEAGGLDQLRARQLWLVLGATLAVYLVLGILYESFLQPLVILSTLPSAGVGALLALWLF 903

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G E NL A+  +  L+G  + + +++ D     +      +S +D + ++    L   + 
Sbjct: 904  GNELNLIALLGLFLLVGVVMKNTILLVDFA---LAGERRGLSAQDSVMEAARLRLRPILM 960

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            TS+AA +  LP+ +  G    +     I +  G++V+   +++    + L +   RAK 
Sbjct: 961  TSLAALLGTLPLMLANGEGWELRQPLGIAIVGGLLVSQWLTLYTTPAMYLALARIRAKR 1019



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/140 (15%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL     + + +  TL   AL G   N  ++ A++      V+D +VV + +    +
Sbjct: 360 WRAALVPSVAIPVVLFGTLALIALMGFSLNTLSLMALIVAAVLVVDDAIVVLENI---AR 416

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                        +  +E     +  ++A  +  + +      V      F++ +    V
Sbjct: 417 HRELGADRWQAAVRGASEVGATLLSMNVALAVVFVSILFLDDFVERLFREFSLTL----V 472

Query: 807 VAASSSIFIAAPILLFIYDW 826
            A + S+ +A  ++  +   
Sbjct: 473 AAMTVSVLVALSLVPMLCAR 492



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 60/528 (11%), Positives = 146/528 (27%), Gaps = 42/528 (7%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFP--SAMPKNRISLGLDLRGGSHLV- 57
            +R   W ++ +  +  +           Q      P          + G D   G     
Sbjct: 527  LRRLRWPLLAFVAVIALNTW-----LFQQVPKGIVPKQDTAQLRGFARGDD---GLSFQA 578

Query: 58   LEVDEDDFVNGFL-QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
            ++   D +    L     +++       G    S       I +       ++  + +V 
Sbjct: 579  MQPKIDAYRKLLLSDPAIEDI------IGYIGGSNGVNNAFIMIKMKPLAERKVSSQQVI 632

Query: 117  LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
              L+    KL        +      E +    +     + +          +      G+
Sbjct: 633  DRLRARLPKLPGGNLYLWVDQDIRLEGAGSSGKYEFQLLSADTAPLREWAPKVAAALRGL 692

Query: 177  SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
             E           + Q+  + D     +       ++       + ++         +  
Sbjct: 693  PELVDVEAQGEAGMRQVVLDIDREAAARHGVDLRTVANMLNNSFSQRQVATLYDSLNQYR 752

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
               +   +                   +    +  +   +   +R    +  +    +A 
Sbjct: 753  VVMELDPK-----------------HTQDPGTLSRLQVIDGNGQRIPLSSIASWRYGMAP 795

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                       I               T    G ++ ++   S+  KL+           
Sbjct: 796  DRVYHSEQFASIWIEFALAPGMGLEQATQAIDGAMSKLMLPRSVQGKLSGEAGGLDQLRA 855

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
                +  G    V  ++ I+    +      LV   ++    +  L  L L G  L L +
Sbjct: 856  RQLWLVLGATLAVYLVLGILYESFLQ----PLVILSTLPSAGVGALLALWLFGNELNLIA 911

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            + G+ L +G+ + + IL+ +      R+  S   S+          I  +++ AL+ T+ 
Sbjct: 912  LLGLFLLVGVVMKNTILLVDFALAGERRGLSAQDSVMEAARLRLRPILMTSLAALLGTLP 971

Query: 477  LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            L      G    +   I +   +L+S +  +    AM + + R +  +
Sbjct: 972  LMLANGEGWELRQPLGIAIVGGLLVSQWLTLYTTPAMYLALARIRAKR 1019


>gi|88196497|ref|YP_501322.1| hypothetical protein SAOUHSC_02866 [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|87204055|gb|ABD31865.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|320138957|gb|EFW30843.1| MMPL family protein [Staphylococcus aureus subsp. aureus MRSA131]
          Length = 822

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/592 (12%), Positives = 188/592 (31%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 95  KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 154

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 155 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 214

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 215 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVVF 274

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++ +A++++ A++    +  K+  +  
Sbjct: 275 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFAVLSALTLLPALISIFHKRIKVNKLQS 334

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
                                                                       
Sbjct: 335 KFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 394

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 395 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 454

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 455 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 514

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 515 LFASVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 574

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 575 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 631

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 632 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 683



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 72  TKDDGIVQPNITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 131

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 132 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 191

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 192 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 248

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       V+  +   I+V  +++ G   +       A  +V A
Sbjct: 249 QVMKTETDYIKGIGLAIGTAGSAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFA 308

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 309 VLSALTLLPALISIFHKRIKVNK 331


>gi|217978052|ref|YP_002362199.1| acriflavin resistance protein [Methylocella silvestris BL2]
 gi|217503428|gb|ACK50837.1| acriflavin resistance protein [Methylocella silvestris BL2]
          Length = 1031

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/554 (13%), Positives = 169/554 (30%), Gaps = 26/554 (4%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    ++  S ++     +  +    +  T++ A     +   + V   + 
Sbjct: 56  ASPAELETQVTKPVEDAISGVEGVRHILSQVTDAVSVTTITLALGADTDRALNDVKDAVT 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +L  +  + L+        SI+              + S  +      ++      
Sbjct: 116 RIRGQLPRNINEPLIRQVGVVGASILAYAAVAPGKTPE--QLSNYVDEIVKPKLQEVRGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   +  ++    DP+RL     T A +S      N    G    +     S    
Sbjct: 174 GNVERIGGVDREILVSLDPARLAAFGLTAADVSRRLRGTNLDLAGGQAELGGQTQSIRTL 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  E++G  L                                   +   +A     
Sbjct: 234 AGARTLDELAGSVLALPK--------------------GGAVRLDELGVVTDTIAEPRTF 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L    I           S              L A    I L +++  +V   LG+  
Sbjct: 274 ARLDGEPIVAFSIQRSKGASDVTVAAEVEKRIEALHAARTDIDLKLIDT-SVAYTLGNYH 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T    A L +IV+F+ +   +  ++A  ++ L++I    ++ +LG +L L S+  I
Sbjct: 333 SAMSTLFEGALLAVIVVFLFLRDLRATVIAAIALPLSIIPAFFVMDVLGFSLNLVSLLAI 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L  G+ VD  I+  E I    R  +S F +           +   ++T +     + F 
Sbjct: 393 TLATGILVDDAIVEIENIVRHIRMGKSAFQAAIDAADEIGLAVIAISLTIVAVFAPVSFM 452

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   + F +T+   +L S+  A  I   +  + ++ +  +      L++ +     
Sbjct: 453 NNIAGQYFKQFGLTVSAEVLFSLLAARLITPMLAAYFLKAEGHQEEKEGKLTQRYAKIVA 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
            +++   +      +    SI S  L+ T         +  + + + A   +  +   ++
Sbjct: 513 WSVERRYSTVVIGLVLFALSILSTKLIGTDFQPTQDAGRSHLAIELPAGSTLSQTQGMAD 572

Query: 598 LESLQIGDISFQNF 611
             S  +   S    
Sbjct: 573 DVSRLLRQRSEVTH 586



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 55/166 (33%), Gaps = 10/166 (6%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +A+++           + A   L L I        + G   NL ++ A+    G  V
Sbjct: 341 GALLAVIVVFLFLRDLRATVIAAIALPLSIIPAFFVMDVLGFSLNLVSLLAITLATGILV 400

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
           +D +V  + +   ++      S       + +E     +  S+       P++      G
Sbjct: 401 DDAIVEIENI---VRHIRMGKSAFQAAIDAADEIGLAVIAISLTIVAVFAPVSFMNNIAG 457

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI----YDWRAKNARI 833
                F + ++  ++ +  ++  I   +  +          K  ++
Sbjct: 458 QYFKQFGLTVSAEVLFSLLAARLITPMLAAYFLKAEGHQEEKEGKL 503



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/216 (12%), Positives = 75/216 (34%), Gaps = 7/216 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++    ++Q         +     +        P   I+  +    +   EL       +
Sbjct: 789  DREREAQIQAALAPGSTLSEAEAAIYDLPLMKNPPPGIRVGKSGDAEAMAELFAGFAEAM 848

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                I +   + + F  +   +  + +L L I   +    +     ++  +  +L L+G 
Sbjct: 849  RNGLIMVYAVLVVLFASFLQPVTILFSLPLSIGGAIFALLITSRPVSMPVIIGILMLMGI 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D    +++   + +     I ++  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDF---SIEAMRSGMERTQAIVEAGKKRARPIVMTTIAMVAGMVPSALAIGA 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            GG      AI +  G++V+   S+         + D
Sbjct: 966  GGEFRAPMAIAVIGGLIVSTVLSLLFVPAFFAMMDD 1001



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 63/504 (12%), Positives = 148/504 (29%), Gaps = 29/504 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +    +L AL     + +   F       R  L ++L  GS L       D V+  L+  
Sbjct: 522 VVIGLVLFALSILSTKLIGTDFQPTQDAGRSHLAIELPAGSTLSQTQGMADDVSRLLRQR 581

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
           S+    F+    I   +    +  I +++     +     ++   +    + L  D +  
Sbjct: 582 SEVTHVFIDGGHIPPSTSDVRKASIVVNYTPRGERAKTVQQLEAEISRDLNALP-DIRSW 640

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +    ++ +S V++  +   V + A E +      RI  +    ++           +L
Sbjct: 641 FVDDYGQRPVSYVVTGPDSVTVATFAAELA--AQMNRIPALANVIASTSLE-----RPEL 693

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               D     +L  +T  +S    +            +F  D          + ++ G  
Sbjct: 694 LVRPDRDLAARLGVSTEGLSETLRVA-TIGDVGPALAKFNADGRQIPI----RAKLDGAA 748

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
            +           + +  I             +   I          R            
Sbjct: 749 RSD---------KQVLESIGVPTGAGPVVPLSSIAQIELGQGEASISRFDREREAQ---I 796

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
                     +   A I    L     P                     +     +  + 
Sbjct: 797 QAALAPGSTLSEAEAAIYDLPLMKNPPPGIRVGKSGDAEAMAELFAGFAEAMRNGLIMVY 856

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
            +++ +   + +   +  FS+ L++   +  L +    +++P I GI++ +G+   + I+
Sbjct: 857 AVLVVLFASFLQPVTI-LFSLPLSIGGAIFALLITSRPVSMPVIIGILMLMGIVTKNAIM 915

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAI 490
           + +   E  R       ++     +    I  + I  +   V        GG      AI
Sbjct: 916 LVDFSIEAMRSGMERTQAIVEAGKKRARPIVMTTIAMVAGMVPSALAIGAGGEFRAPMAI 975

Query: 491 TMGLSILISMFTAISIVRAMMIFI 514
            +   +++S   ++  V A    +
Sbjct: 976 AVIGGLIVSTVLSLLFVPAFFAMM 999


>gi|117918828|ref|YP_868020.1| acriflavin resistance protein [Shewanella sp. ANA-3]
 gi|117611160|gb|ABK46614.1| acriflavin resistance protein [Shewanella sp. ANA-3]
          Length = 1029

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 160/533 (30%), Gaps = 39/533 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R       +  ++  +G      N L    +  +P                         
Sbjct: 9   RRPVLAASISFLLLLLG-----FNALNSMQVREYPKMTNTVVT---------VSTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + + GF+    ++  +                +KI++    +         +   +  
Sbjct: 55  DANLIQGFITQPLEQALAQADNVDFMTSESFLGTSKISVYMKLNTDPNGALADILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T  + S++      DQ+ S   + +  + R    Q+   +   
Sbjct: 115 VRSQLPKEAEDPSVEMSTGSQTSVLYISFFSDQINSS--QLTDYLERVVKPQLFTIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I   +    DP+R+     +++ +       N           +   +     
Sbjct: 173 KVNLYGGIKYAMRIWLDPARMGAFKLSSSDVMQVLQANNYQSAVGQTNGVYTLFNGTADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+                      +                ++    +  +   
Sbjct: 233 QVATIEELK--------------------RLVIGSKDGLVVRLGDIADVSLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +          L   +     P   + +   +  A   S   
Sbjct: 273 LANGKEAVVIGLDVTPTANPLNVAADTRALLPEIERNLPPSIGSSILYDSSLAIDESIKE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +V++V+ + +   +  ++   +I L++I    ++ + G TL L ++  +V
Sbjct: 333 VVKTIGEAAIIVIVVITLFLGSLRAVVIPIVTIPLSLIGVAIIMQMFGFTLNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVDRHIKLGESPFRAAIIGTREIAVPVISMTITLAAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
              G   + FA+T+  S+ IS   A+++   M   I++     +     +  F
Sbjct: 453 GITGSLFKEFALTLAGSVFISGIVALTLSPMMCAKILKPHTTPNRFEMGVENF 505



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 56/146 (38%), Gaps = 6/146 (4%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + I +++           +  I T+ L +        +FG   NL  + A++  IG  V
Sbjct: 340 AAIIVIVVITLFLGSLRAVVIPIVTIPLSLIGVAIIMQMFGFTLNLMTLLAMVLAIGLVV 399

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +    +      S          E     +  ++       P+A+ G   G
Sbjct: 400 DDAIVVVENV---DRHIKLGESPFRAAIIGTREIAVPVISMTITLAAVYAPIALMGGITG 456

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAA 817
           S+   FA+ +A  + ++   ++ ++ 
Sbjct: 457 SLFKEFALTLAGSVFISGIVALTLSP 482



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 72/187 (38%), Gaps = 11/187 (5%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDI---TK 706
             + + +G           +    +++   + + +  +F+     L  + ++ L I     
Sbjct: 830  YSYDFLGEARQFVTEGSALYATFLLAIAIIFLVLASQFESLKDPLVILVSVPLAISGALI 889

Query: 707  TLGFFALFGI-EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LG+  +FG+ + N+     ++TL+G      +++ +  ++        +S  + I  + 
Sbjct: 890  VLGWTHVFGLAKINIYTQVGLITLVGLITKHGILMCEVAKEE--QLHRGLSKLEAIKLAA 947

Query: 766  NETLGRSVYTSMAAFISVLP-MAVWGGSVIGSF--AIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T+ A    +LP +   G   +  F   I +  G+ +    ++F+   I  +
Sbjct: 948  TIRLRPILMTTAAMIAGLLPLLFASGAGAVARFNIGIVIVAGLSIGTIFTLFVLPVIYTY 1007

Query: 823  IYDWRAK 829
            + +    
Sbjct: 1008 LAEKHEP 1014


>gi|168179557|ref|ZP_02614221.1| protein-export membrane protein SecD [Clostridium botulinum NCTC
           2916]
 gi|182669858|gb|EDT81834.1| protein-export membrane protein SecD [Clostridium botulinum NCTC
           2916]
          Length = 422

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 80/198 (40%), Gaps = 4/198 (2%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +    +    K   +           VG  +    +   +   ++    + +
Sbjct: 207 VITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVSLVFL 266

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + ++    L A   L L I   L  F+       L+ +A  L  IG +V+  V++++
Sbjct: 267 FMIVYYRVP-GLLADIALALYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFE 325

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+R+ +K   T  S +  ++   +  L   + +++   I+ + +   G   +  FA+ + 
Sbjct: 326 RIREELK---TGKSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLM 382

Query: 803 FGIVVAASSSIFIAAPIL 820
            GI+++  ++I +   +L
Sbjct: 383 IGIILSMFTAIVVTRLLL 400



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 135/385 (35%), Positives = 227/385 (58%), Gaps = 26/385 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +L +   D+V    +++++E+I  R++++G+SE+T+ R G  RI I++PG+ +   +   
Sbjct: 61  MLEEIQADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDS 120

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T ++ F                             +    ++G  +  ATA  + + 
Sbjct: 121 VGKTGELKF--------------------------VGPDKSTILTGKDVKDATAYINQED 154

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
           + P V +  +E G ++F + T+  IG+P+A+ +D   LT PV+   I +GKA I+G+ +I
Sbjct: 155 NSPTVGLDLNESGTKKFADATKKFIGQPIAIYMDEEELTKPVVQAHITNGKAVITGSKSI 214

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A ++++G+LP+ +  VE R VGA LG++++     A V G+ L+ LFMIV Y  
Sbjct: 215 EEAKRQANIIKSGALPVAVKPVEVRTVGATLGANALDLSVKAGVVGVSLVFLFMIVYYRV 274

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD ++ L ++L LA  S + ATLTL  IAG +L IG+AVD+N+L+ ERIREE +  
Sbjct: 275 PGLLADIALALYIVLLLATFSTIKATLTLSGIAGFLLTIGMAVDANVLIFERIREELKTG 334

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +L+ G+ RA S+I DSNIT +IA +VL+  G GAV+GFA+T+ + I++SMFTAI 
Sbjct: 335 KSIKSALESGYHRALSSILDSNITTIIAGIVLYNLGSGAVKGFALTLMIGIILSMFTAIV 394

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSR 530
           + R ++        + S+    + R
Sbjct: 395 VTRLLLKLGYDIGILNSLACFRVKR 419



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 75/250 (30%), Gaps = 6/250 (2%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++N    ++   +  + + +          +  +        I+ GLDL+GG  ++ E+ 
Sbjct: 7   KSNKGKSVIIFTLLVVVIAVLAYAGSYGLKVGNYRFKSFGETINKGLDLQGGVSMLEEIQ 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D      +    + +   + K G+   ++ R+ Q +I +        + + D V    +
Sbjct: 67  ADKVDEKTVDRTIELISMRVNKMGVSETTVTREGQKRIRIEIPGKYNAKEVIDSVGKTGE 126

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                  V P K+ ++T  + + +        +      ++ +    ++  D        
Sbjct: 127 LKF----VGPDKSTILTGKDVKDATAYINQEDNSPTVG-LDLNESGTKKFADATKKFIGQ 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      +  P  Q      + + T +K         N  K     V          
Sbjct: 182 PIAIYMDEEELTKPVVQAHITNGKAVITGSKSIEEAKRQANIIKSGALPVAVKPVEVRTV 241

Query: 241 YLVEDKVEIS 250
                   + 
Sbjct: 242 GATLGANALD 251


>gi|75675713|ref|YP_318134.1| acriflavin resistance protein [Nitrobacter winogradskyi Nb-255]
 gi|74420583|gb|ABA04782.1| Acriflavin resistance protein [Nitrobacter winogradskyi Nb-255]
          Length = 1032

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/562 (11%), Positives = 147/562 (26%), Gaps = 38/562 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  IG++           +   P+                        
Sbjct: 10  RRPVGTTLLAIGLFLIGVVA-----YGVLPVASVPNVDFPMIR---------VSASRPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        S       I L FA  R  ++ A  V   +  
Sbjct: 56  SPSVMAATVAAPLERRLGEIAGVEQITSSSTLGSTSIHLQFAIGRDIDHAARDVQAAINA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D              S V     +                  + ++       
Sbjct: 116 SLANLPTDMPTLPKFRKANPAASPVFI-LALTSKTMSTSAIYDVADTVLVQRVSQVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S      +    +P  L     +T  +    V  N      +F      ++     
Sbjct: 175 EVSVSGADQPAVRIALNPVALSNAGISTDDVRTAIVNANPLGPVGIFNGDRQSETLSTNR 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                      DI     G           +           
Sbjct: 235 QMRSAAEF--------------------RDIVIKSSGGNFVRLSDVAEVKDATRNSRSIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +   T++    L   L+          +     G    S   
Sbjct: 275 WFNKQPAVLIQVTKQGDANVIDTVDRVRALLPELKQWIPAGIEVSIIVDRTGTIRASVED 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A LV++V+F  +      + A  S+ L +  T A + L G ++   S+  + 
Sbjct: 335 MEWTLLATALLVMVVVFAFLRRFTPTVAAGVSVPLALAGTCAGMWLAGFSIDNLSLMALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E +     +    + +   G  +   T+   +++ + A   L F  
Sbjct: 395 ISVGFVVDDAIVMIENMYRNLEQGLPPYRAALEGARQIGFTVLSISLSLIAAFTPLIFMD 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  +R F++T+  +I++S   ++++   +    I+                L+   +
Sbjct: 455 GIVGRLLREFSLTLTFAIVVSTIVSLTVTPMICAHYIKRATSTDATRFDRLVEGLLSRIV 514

Query: 539 AIQFMRARFWGVGISILFSICS 560
           A      R       ++  +  
Sbjct: 515 AFYTRTLRVVLGFPVLMLLVFF 536



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 76/213 (35%), Gaps = 10/213 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG---- 669
            K   V +Q            ++ V+  + E+           +    +  +        
Sbjct: 277 NKQPAVLIQVTKQGDANVIDTVDRVRALLPELKQWIPAGIEVSIIVDRTGTIRASVEDME 336

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              +  + + M++      ++   + A  ++ L +  T     L G   +  ++ A+   
Sbjct: 337 WTLLATALLVMVVVFAFLRRFTPTVAAGVSVPLALAGTCAGMWLAGFSIDNLSLMALAIS 396

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G+ V+D +V+ + M +N+      +       +   +     +  S++   +  P+   
Sbjct: 397 VGFVVDDAIVMIENMYRNL---EQGLPPYRAALEGARQIGFTVLSISLSLIAAFTPLIFM 453

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            G V   +  F++ + F IVV+   S+ +   I
Sbjct: 454 DGIVGRLLREFSLTLTFAIVVSTIVSLTVTPMI 486



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 85/223 (38%), Gaps = 6/223 (2%)

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
            +  +    V + +     V        +++ + E+     I+ +        R+   +  
Sbjct: 801  YHSQSFPSVTVSFNTLPGVELQDATANIQRAVDELHMPEGIRGSFEGSAADFRKTSGRQP 860

Query: 671  VGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++ + +A+ I + + ++     L  I+TL       L    + G    + A   ++ L
Sbjct: 861  LLILGALVAVYIVLGVLYESLAHPLTIISTLPSAGLGALLALQITGTPLTIIAFVGIILL 920

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ D   +        +S  D I ++        + T+MAA  + +P+ + 
Sbjct: 921  IGIVKKNGIMIVDFALE--AERQRGLSSADAIFEACRVRFRPIIMTTMAALFAAIPLVLA 978

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G  +     I +  G++V+   +++    I L I   R +
Sbjct: 979  TGPGTELRRPLGITIIGGLLVSQILTLYTTPVIYLLIDRIRRR 1021


>gi|302334172|gb|ADL24365.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 829

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 75/592 (12%), Positives = 189/592 (31%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDDSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTDIGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAVGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D E
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDNE 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +     ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKHGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFASVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 87/263 (33%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +      + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDDSRDNVKSHLKDLRDNHNVQTELTGTGMTSTDIGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYIKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKRIKVNK 338


>gi|49484753|ref|YP_041977.1| transport protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282902460|ref|ZP_06310353.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus C160]
 gi|282906886|ref|ZP_06314734.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282909859|ref|ZP_06317668.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282912110|ref|ZP_06319906.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|283959321|ref|ZP_06376762.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|295429129|ref|ZP_06821751.1| MMPL family protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297589372|ref|ZP_06948013.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus MN8]
 gi|49242882|emb|CAG41611.1| putative transport protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282323806|gb|EFB54122.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282326433|gb|EFB56737.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282329785|gb|EFB59306.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282596919|gb|EFC01878.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus C160]
 gi|283788913|gb|EFC27740.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|295126888|gb|EFG56532.1| MMPL family protein [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297577883|gb|EFH96596.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus MN8]
          Length = 829

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/592 (12%), Positives = 191/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           IN+   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAVGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    ++ K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKHIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
           N                                                           
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKQGPNAESTNDLVHDLRDYNKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYIKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKHIKVNK 338


>gi|262366571|gb|ACY63128.1| multidrug resistance protein MdtC [Yersinia pestis D182038]
          Length = 985

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 55/475 (11%), Positives = 134/475 (28%), Gaps = 24/475 (5%)

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +     +              + ITL F  +   +    +V   +    + L  D
Sbjct: 5   ITAPLERQFGQMSGLKQMASQSSGGASVITLQFQLTLPLDVAEQEVQAAINAATNLLPSD 64

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                +          +L+   +        +    +  +   +I           S   
Sbjct: 65  LPYPPIYNKVNPADPPILT-LAVTATAIPMTQVEDMVETRIAQKISQVTGVGLVTLSGGQ 123

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +  + +   +  L   +  +       N +                           
Sbjct: 124 RPAVRVKLNAPAVAALGLDSETIRTAISNANVNSAKGSLDGPTRS--------------- 168

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                   +AN   K+ +   D+                 I +                 
Sbjct: 169 -----VTLSANDQMKSAEEYRDLIIAYQNGAPIRLQDVATIEQGAENNKLAAWANTQSAI 223

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 +  ++   T ++   +   L           V          S +  +    + 
Sbjct: 224 VLNIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTSTIRASVNDVQFELLLA 283

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV++V+++ +      ++   ++ L+++ T A +  LG ++   ++  + +  G  VD
Sbjct: 284 IALVVMVIYLFLRNAAATIIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTIATGFVVD 343

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVR 486
             I+V E I     K +    +   G      TI     + +   + L F     G   R
Sbjct: 344 DAIVVIENISRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMEDIVGRLFR 403

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
            FA+T+ ++ILIS   ++++   M   ++ Y+ ++  +    +        IA  
Sbjct: 404 EFAVTLAVAILISAVVSLTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIAHY 458



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  I ++ G  + +     ++     + L +      +   
Sbjct: 166 TRSVTLSANDQMKSAEEYRDLIIAYQNGAPIRLQDVATIEQGAENNKLAAWANTQSAIVL 225

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   V              +  EL+    
Sbjct: 226 NIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTSTIRASVNDVQFELL---- 281

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I+ + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 282 --LAIALVVMVIYLFLR-NAAATIIPSIAVPLSLVGTFAAMYFLGFSINNLTLMALTIAT 338

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+    
Sbjct: 339 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFME 395

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 396 DIVGRLFREFAVTLAVAILISAVVSLTLTP 425



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/204 (17%), Positives = 82/204 (40%), Gaps = 7/204 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             +  V     EI   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 763 EAVAAVTLAEKEIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 822

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 823 HPITILSTLPTAGVGALLALMLTGNELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 880

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
              ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 881 DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGVGAELRQPLGVCMVGGLIVS 940

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
              ++F   P++  ++D  A+N R
Sbjct: 941 QVLTLF-TTPVIYLLFDKLARNTR 963


>gi|325518849|gb|EGC98420.1| putative cation/multidrug efflux pump [Burkholderia sp. TJI49]
          Length = 958

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/636 (11%), Positives = 169/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  PS                  ++   
Sbjct: 8   LRRPYTFIVMAIMIVL-----ATPLALMRTPVDVLPSINIPV-----------VSVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
             + F    +      +        +        +       + +        +    + 
Sbjct: 50  SYNGFSAKEMSDRITSVHERSLTTTVNNIQHIESTSLPGIAVVKVYLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +       +     Q+ 
Sbjct: 110 VASAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LGDIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  LR    T A +     + N         +     
Sbjct: 168 TIPGAQIPFPYGGRTRVVAIDIDPQALRAKGLTPADIVNAVNVQNLILPTGTAKMGQTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +I+                     +    +     +     ++    +
Sbjct: 228 RIDTNASADTIADIT--------------------HLPIRTVNGATTYLGEVASVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLVSILKSGDASTLRVVSDLKALLPKVIPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   +I L V+ +L  LS LG T+ + 
Sbjct: 328 DAAVQGVIHEALIAAVLTAMMILLFLGSWRATLIIAVTIPLAVLTSLCALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I     +   +  ++  G        F S ++  I   
Sbjct: 388 TLGGLALAVGILVDDATVAIENITHHLERGAPLEEAILTGAGEIAVPTFVSTLSICIVFA 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F   G         A  +  ++L S   + ++V  + + + R ++  +   +   RF 
Sbjct: 448 PMFLLTGVARYLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPQQAHTGPDHATGRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    F R R W + +  +  +              +       LG       D  
Sbjct: 508 RAHHAFNNAFERLRAWYIVLLSILLVRRRFYATCFLAFCVLSTGLVFVLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P D 
Sbjct: 568 NIRLHMRAPTGYRIEETARLADQVERVVREIVPPDE 603



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  ++ +     W   L    T+ L +  +L   +  G   N+  +  +   +G
Sbjct: 338 ALIAAVLTAMMILLFLGSWRATLIIAVTIPLAVLTSLCALSALGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +              + I     E    +  ++++  I   PM +  G
Sbjct: 398 ILVDDATVAIENI---THHLERGAPLEEAILTGAGEIAVPTFVSTLSICIVFAPMFLLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  +V A  +S  ++  ++  +
Sbjct: 455 VARYLF-VPLAEAVVFAMLASYVLSRTLVPTL 485


>gi|163797794|ref|ZP_02191740.1| acriflavin resistance protein D [alpha proteobacterium BAL199]
 gi|159176916|gb|EDP61482.1| acriflavin resistance protein D [alpha proteobacterium BAL199]
          Length = 1067

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/517 (12%), Positives = 150/517 (29%), Gaps = 33/517 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++    M+   G +  +        +   P       I+                 
Sbjct: 10  RPIAVLATVLMVVLFGYVALV-----SIPIQLAPDVNQP-VIN--------VRTNWAGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    L+            +  I L F            V   L  +
Sbjct: 56  PAEVEREITNRQEDELRGLEGLRKMTSQSEIGRASIELEFLIGTDMNKALLLVANRLDRI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +   +   +       ++      +                        D+I       +
Sbjct: 116 SGYPDEAEEPIFDTAGSDDNAIAWMVLMAGPGNERRIGTYYDFAEDIIKDRIERVPGIAR 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP RL +   T  ++       N S  G        R +   Q  
Sbjct: 176 MNIYGGSQREIQVIVDPERLARFQITVPQVVTALRQANASISGGAVEEGKRRYTVRTQGD 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++    +  + L   T     +  +  V+                 N+       +    
Sbjct: 236 LDSPAAVREVALRTDTDPATGRVARVTVN--------------DVANVTFDYKEAVSNIR 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK--LNIVEERNVGADLGSDS 360
                        +   +   T+         LR   LP +  +             +  
Sbjct: 282 RFGVPAIGMPMYRETGANVIETMAGVRAAIDELRRDYLPAQNLILQQVYDETTYINSAID 341

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           +      I   L  IVLF  +   +  LV   +I ++VI +   ++ LG ++ + S+AGI
Sbjct: 342 LVTQNIYIGGALAAIVLFTFLRSWQATLVVSLAIPVSVIGSFVAMAALGRSINVVSLAGI 401

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +G+ VD+ I+V E I    +   S   +   G ++ +  +  S +T ++  + +   
Sbjct: 402 AFAVGMVVDAAIVVLENIFRLRQHGHSAREAAYRGAAQVWGAVLVSALTTVMVFLPILIM 461

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               G   R  A+ + +S+L+S+  +++++ A+   +
Sbjct: 462 DLEVGQLFRDIAVAISVSVLLSLLVSVTVIPALAGRL 498



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 70/183 (38%), Gaps = 8/183 (4%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                 +  +  + E+ +  +     +      E      + +L+ + I  +  +  A++
Sbjct: 299 NVIETMAGVRAAIDELRRDYLPAQNLILQQVYDETTYINSAIDLVTQNIY-IGGALAAIV 357

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           ++ ++R  W   L     + + +  +    A  G   N+ ++A +   +G  V+  +VV 
Sbjct: 358 LFTFLR-SWQATLVVSLAIPVSVIGSFVAMAALGRSINVVSLAGIAFAVGMVVDAAIVVL 416

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFA 798
           + +    +L     S R+   +   +  G  + +++   +  LP+ +     G +    A
Sbjct: 417 ENI---FRLRQHGHSAREAAYRGAAQVWGAVLVSALTTVMVFLPILIMDLEVGQLFRDIA 473

Query: 799 IPM 801
           + +
Sbjct: 474 VAI 476



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 91/252 (36%), Gaps = 10/252 (3%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   +   V +  +    E+    +I            +          A   + E V 
Sbjct: 790  PVVTSSGTIVPVGSLADVYETTGPTEIRHSERARTITLQISPPAAMPLEQAMDIINEQVI 849

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
              +      +  +           E     ++ + ++ + + + + + F+ +++ L  I 
Sbjct: 850  DPLRAEGLPAGTKLLMSGTADKLTETWNAMVLDLALALVIVYLVMAVLFESFFYPLIIIF 909

Query: 699  TLILDI-TKTLGFF---ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            ++ L      +G F    L+    ++  +   + LIG  VN+ +++ D  +    L    
Sbjct: 910  SVPLATAGGVIGLFLLNQLYQQNLDMLTLLGFVILIGTVVNNAILLVD--QTLYHLRREG 967

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASS 811
            +S  D I ++ +  +     +++ + + ++P+ +    G  +       +  G+ ++A  
Sbjct: 968  MSPADAILEATSNRIRPIFMSTLTSVLGMMPLVLMPGAGSELYRGLGSVVVGGLSLSAVL 1027

Query: 812  SIFIAAPILLFI 823
            ++ +  P+L   
Sbjct: 1028 TLGLIPPMLSLF 1039


>gi|146339398|ref|YP_001204446.1| AcrB/AcrD/AcrF family mulitdrug efflux protein [Bradyrhizobium sp.
           ORS278]
 gi|146192204|emb|CAL76209.1| putative multidrug efflux transporter (RND family,AcrB/AcrD/AcrF
           family) [Bradyrhizobium sp. ORS278]
          Length = 1025

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/519 (13%), Positives = 155/519 (29%), Gaps = 39/519 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  +GL       + Q    +  + +  +    G D            
Sbjct: 9   RRPVLALVVSALILVLGLRSMTTLAILQYPRTQN-AIVTVSTAYAGAD------------ 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    +   +          +     + IT++   +        ++   +  
Sbjct: 56  -SDIIAGFITTSLENAIAQANGIDYMTSTSVTGSSTITVNLRLNYDSGKAMTEINAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++  L     + I  +      +  +    + +  + R    ++       
Sbjct: 115 VLNQLPTGTQQPTLTLKVGQTIDAMYIGFASE--VLAPNQITDYLTRVVQPKLQAVSGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP +L     T   +S                        GN Y
Sbjct: 173 TAELLGAKKFALRAWLDPDKLAAYGLTATDVSTAL--------------------SGNDY 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +         +      A  +  + +   ++   ++           N+           
Sbjct: 213 ISGLGTTKGRLVQVDLAAATNLHSLEQYRNLVIKQVNGAIIRLRDVANVTLGNDDYDSAT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    I     +   L+        + V   +      S   
Sbjct: 273 RFNGKTAVYIGIQVAPTANLLDVINGVKAVLPDLQRQLPNGITSEVLYDSTDFVNSSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V+ V+FM +   +  L+   +I L++I T  L+ L+G ++ L ++  +V
Sbjct: 333 VVHTLVEAIAIVIFVVFMFLGSWRSVLIPVIAIPLSLIGTFGLMLLMGFSINLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +     +  S   +         S I    +  +   V + F G
Sbjct: 393 LAIGLVVDDAIIVVEAVHRLIDEGVSPVEAAIQSARSLASPIIAMTVVLIAVYVPVGFQG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
              G     FA T+  ++ +S   A+++      +++R 
Sbjct: 453 GLTGALFTEFAFTLAGAVTVSAVIALTLSPMNCAWLLRR 491



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 85/243 (34%), Gaps = 7/243 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V +        D + +       ++        + +     ++ V   +   +P     
Sbjct: 257 DVANVTLGNDDYDSATRFNGKTAVYIGIQVAPTANLLDVINGVKAVLPDLQRQLPNGITS 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISA-IAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                        I + +  ++ +  I + +       W   L  +  + L +  T G  
Sbjct: 317 EVLYDSTDFVNSSIDEVVHTLVEAIAIVIFVVFMFLGSWRSVLIPVIAIPLSLIGTFGLM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            L G   NL  + A++  IG  V+D ++V + +    +L    +S  +   +S       
Sbjct: 377 LLMGFSINLLTLLALVLAIGLVVDDAIIVVEAVH---RLIDEGVSPVEAAIQSARSLASP 433

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++      +P+   G   G++   FA  +A  + V+A  ++ ++     ++    A
Sbjct: 434 IIAMTVVLIAVYVPVGFQGGLTGALFTEFAFTLAGAVTVSAVIALTLSPMNCAWLLRRTA 493

Query: 829 KNA 831
           ++A
Sbjct: 494 RDA 496



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 80/277 (28%), Gaps = 15/277 (5%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
            +    S+      +            +      +    N  V LS V           I
Sbjct: 732 NYLDYFSLEGRSYKVIPQVRQNDRLTDNQLLDYSIRTSGNAMVPLSTVARLEHKTIPESI 791

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           +                      A   + ++     +         + ++          
Sbjct: 792 NHFQQINAATISGVAMPGVAMGDALASLKQLATSLPSGYSIDYGGASRQLEQESGGFVTT 851

Query: 667 RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF--FALFGIEFNLTAV 723
                  + + I + + +   F  +   +  + ++ + +   L F    L G   N+   
Sbjct: 852 ------FVFALIIIFLALAALFNSFVDPIIILVSVPMSLAGALIFINLGLGGASINIYTQ 905

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             ++TL+G      +++ +   +   L        + I ++    L   + T+ A  + V
Sbjct: 906 VGLVTLMGLVSKHGILMVEVANE---LREHGKDRTEAIIEAATIRLRPILMTTAAMVLGV 962

Query: 784 LPMA-VWGGSVIGSF--AIPMAFGIVVAASSSIFIAA 817
           +P+    G   +  F   + +A G+ +    ++F+  
Sbjct: 963 IPLITASGAGAVSRFNMGLVIATGLAIGTLFTLFVVP 999


>gi|83312511|ref|YP_422775.1| cation/multidrug efflux pump [Magnetospirillum magneticum AMB-1]
 gi|82947352|dbj|BAE52216.1| Cation/multidrug efflux pump [Magnetospirillum magneticum AMB-1]
          Length = 1035

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/525 (13%), Positives = 159/525 (30%), Gaps = 40/525 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  +I  IGL   +        + ++P                         
Sbjct: 7   KRPVLAAVVSLLILFIGLRALM-----SLPVRQYPEMTNTVIT---------ITTTFPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + D + GF+     +  +  +          Q  +++      +   E     V   +  
Sbjct: 53  DADMIQGFVTQPIQKAVATAEGINYLTSRSIQGVSEVKAFIRLNDDPETAMTGVMSKVAE 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L      +++   T +  +      + D++     + +  ++R    ++       
Sbjct: 113 VKSLLPKGINDSIIKKETGQSFASAYLAFSSDRLSQQ--QITDYVMRVVQPKLAAVPGVA 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP +L Q       +       N +         +         
Sbjct: 171 NPELYGGQKFSMRVWLDPEKLAQHGMGPDDLKTALTSNNFTSASGSTKGAY--------- 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       +    A+ D K+ +    +     G+R         +           
Sbjct: 222 -----------DVVNTQASTDLKSVEEFRQLVIKHDGSRLVRLGDVAGVELGPENDDMSV 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                           + +    I          L+A   P     +   +      + +
Sbjct: 271 FAGDERAIFVGIYTTPEANPLSVIREVREVALPALQAQLPPGLTAKIAYDSTLFIDAAIT 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T A  A +V++V+F  +   +  ++   ++ L++I    LL  LG ++ L ++  +
Sbjct: 331 EVAKTIAEAAIIVMVVIFFFMGSVRSVVIPVVTVPLSLIGVAVLLLSLGFSINLLTLLAM 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL IGL VD  I+V E +     +  + F +  +G       +    IT       + F 
Sbjct: 391 VLAIGLVVDDAIVVVENVHRHIEEGLTPFRAALVGTREIAGPVISMTITLAAVYAPIAFM 450

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G   G   + FA+T+  S+++S   A+++   M   I+++   K 
Sbjct: 451 GGLTGSLFKEFALTLAGSVVVSGIIALTLSPMMCSKILKHDDDKK 495



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 74/223 (33%), Gaps = 11/223 (4%)

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             +    +        + +            V+  V++     +               S
Sbjct: 262 GPENDDMSVFAGDERAIFVGIYTTPEANPLSVIREVREVALPALQAQLPPGLTAKIAYDS 321

Query: 663 RELIRKGIVGVI--ISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIE 717
              I   I  V   I+  A+++ + I F        +  + T+ L +          G  
Sbjct: 322 TLFIDAAITEVAKTIAEAAIIVMVVIFFFMGSVRSVVIPVVTVPLSLIGVAVLLLSLGFS 381

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            NL  + A++  IG  V+D +VV + +    +     ++          E  G  +  ++
Sbjct: 382 INLLTLLAMVLAIGLVVDDAIVVVENVH---RHIEEGLTPFRAALVGTREIAGPVISMTI 438

Query: 778 AAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                  P+A  G   GS+   FA+ +A  +VV+   ++ ++ 
Sbjct: 439 TLAAVYAPIAFMGGLTGSLFKEFALTLAGSVVVSGIIALTLSP 481



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 64/159 (40%), Gaps = 6/159 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + I + + +  +F+ +   L  + ++ L I   L   AL     N+     ++TLIG 
Sbjct: 851  VFALIIIFLVLSAQFESFRDPLVIMVSVPLSICGALIPLALGVASMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++ +  R+  +     +     +  +    L   + T+ A    ++P+      
Sbjct: 911  ITKHGILICEVARE--RQEAEGLDRAQAVMVAAGLRLRPILMTTAAMVAGLIPLLFAHGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            G +   S A+ +  G+ +  + ++F+   I  F+   R 
Sbjct: 969  GAASRFSIAVVIVAGMSIGTAFTLFVLPVIYTFVAAQRR 1007


>gi|262171347|ref|ZP_06039025.1| AcrB/AcrD/AcrF family protein [Vibrio mimicus MB-451]
 gi|261892423|gb|EEY38409.1| AcrB/AcrD/AcrF family protein [Vibrio mimicus MB-451]
          Length = 1024

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/634 (12%), Positives = 188/634 (29%), Gaps = 45/634 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++    ++    +  +G             +  FP             L G     +E  
Sbjct: 9   KHPVIAMVFSIAVVLLGAWS-----FQSLEIKYFPEHDQ---------LTGSVSTTIEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKE--NIADKVTLF 118
             +F+   +     +  + + +         Q    + L F D     E  N+ +K+   
Sbjct: 55  SAEFMAKNVAEKLTDAAAMVGRVKTMSTKCVQGSCTLNLVFEDNVTDVEYINLMNKLRSR 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++ V        +K  +   +          + +    +   E    I +Q I Q    +
Sbjct: 115 VEAVKDFPPSMEEKPKVSDNSSDASFASNIISFVSTGDTTQQELFDYIRQQLIPQFRRLD 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P R++ L    + +     + + +              +
Sbjct: 175 GVGAIWGPYGGSAGAVRVWLLPDRMKALQVNPSDVVDAIEMYSTNFTAGKI------IGE 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +  K  +SG+                   +   E G+    +   + +    +V 
Sbjct: 229 ERSYSINPKNTVSGVD-------------DVANLVIRSEEGSTVRLKDVAEVVMGTYSVD 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +     +        L++         V          
Sbjct: 276 PSLLTINGNSAMAIQIKPLRSANPVSVAKLVREKVEQLQSALPEGVKMTVVYDQADFIQS 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S             LV +++ + +   +   +   +I + VI   ++++LLG ++ + ++
Sbjct: 336 SIQEGFNALLEAIVLVSLIMVLFLGSLRLASIPIITIPICVIGVFSVMALLGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E       + +S   +   G       +    +T  +    +
Sbjct: 396 LSIILAIGLVVDDAIVVAENCYRRVEQGESPLNAALKGSKEIAFPVIAMTMTLAVVYTPI 455

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLS 529
            F         R FA T+  ++LIS F A+++   M  ++I+      K    ++     
Sbjct: 456 GFMSGLTVDLFRQFAFTLAAAVLISGFVALTLSPMMCAYVIKPIKAPSKWFSWLESKQQR 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L    +   F R  +   G+S L  +  +   +   L    +  G I+  + A    
Sbjct: 516 LVELYLAELNKWFARKWWVVGGVSALLVLSGLIFWYAPNLLLPTEDTGFIEAKIQAPTGA 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +      N+  L     + ++     +++ +   
Sbjct: 576 NRQYNLDNVRGLNRIIDNEKSVAQNLSYIEQTPS 609



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 90/251 (35%), Gaps = 8/251 (3%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVA 630
           G+D    + +       V L  V   +      D S    +G     +++   +  + V+
Sbjct: 242 GVDDVANLVIRSEEGSTVRLKDVAEVVMGTYSVDPSLLTINGNSAMAIQIKPLRSANPVS 301

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFK 689
             +++    +++   +P               +  I++G   ++ + + + LI +     
Sbjct: 302 VAKLVREKVEQLQSALPEGVKMTVVYDQADFIQSSIQEGFNALLEAIVLVSLIMVLFLGS 361

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
              A   I T+ + +       AL G   N+  + +++  IG  V+D +VV +      +
Sbjct: 362 LRLASIPIITIPICVIGVFSVMALLGFSINVLTMLSIILAIGLVVDDAIVVAENC---YR 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIV 806
                 S  +   K   E     +  +M   +   P+    G  +     FA  +A  ++
Sbjct: 419 RVEQGESPLNAALKGSKEIAFPVIAMTMTLAVVYTPIGFMSGLTVDLFRQFAFTLAAAVL 478

Query: 807 VAASSSIFIAA 817
           ++   ++ ++ 
Sbjct: 479 ISGFVALTLSP 489



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +F+ +      + T+ L I   L    +FG   N+ +   +LTL+G 
Sbjct: 858  VMAIVFIYLILAAQFESFRDPFLILLTVPLCIIGALIALWVFGQSINIYSKIGLLTLVGL 917

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++ +      +     +   + +  S        + T+M   +  LP+A+    
Sbjct: 918  VTKHGILLVEFAN---QRQKEGMPLTEAMLSSARARFRPIMMTTMTMMLGALPLALASGP 974

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G     +  + +  G++     S+F+     + +   R
Sbjct: 975  GSVGRVNIGLVLTGGLLSGTLFSLFVIPVAYVAMKSKR 1012


>gi|182679834|ref|YP_001833980.1| acriflavin resistance protein [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635717|gb|ACB96491.1| acriflavin resistance protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 1074

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 69/568 (12%), Positives = 158/568 (27%), Gaps = 38/568 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L       GLL  L   +       FP+     +              L   +
Sbjct: 10  RPVATSLLAVAALLTGLLGYLFLPVSALPQVDFPTIQVTTQ--------------LPGAD 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S     ++ITL F   R  +  A  V   +   
Sbjct: 56  PDTMAMLVTAPLERQLGQIPSLQRMSSSSGFGLSQITLQFVLDRDIDGAAQDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           NS L  +     + +      S +++   +        + +         ++        
Sbjct: 116 NSTLPKNLPYPPVYSKVNPAASAIVT-LALTSDTVSIRQLADLGDTLIAQRLSQLTGVGH 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +   +  + D +RL         +              + G +   D     Y 
Sbjct: 175 VGIQGNMRPAIRIQADFARLANYGLGLEDLRTAI------SNSNVAGAKGSLDGPQQSYT 228

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +++                   V                  ++ + L        
Sbjct: 229 LASNDQLTSADTYKEVVVTYHNNAPVFVT--------------DVADVVEGLENDKVAGW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T+         L+          +          S +  
Sbjct: 275 HQGKPAVVIDVQRQPGANIVETVARVKAELTRLQQILPSGVSMTIVHDGTETIRASIADV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +   LV+IV+   +   +  +VA  ++ L++I T A++ L G +L   S+  + +
Sbjct: 335 QFTLVVSIVLVVIVVLFFLRTVRATIVAGVALPLSLIATFAVMWLSGFSLDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           G G  +D  I++ E I       ++   +   G      T+    I+ +   + L F   
Sbjct: 395 GTGFVIDDAIVMIENIHRYIEDGETPLAAALKGAKEIGFTVVSLTISLIAVFIPLLFMTG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+ +++++S   ++++   M   ++R  K+             I     
Sbjct: 455 IVGRMFREFALTLTVAVVVSALVSLTLTPMMCGHLLRAAKIGETGHAASGLTGRIDRFTD 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTH 567
                     + +    ++  I      
Sbjct: 515 WVLGGYHKSLLVVLRHQTLMLILSTVIM 542



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 6/115 (5%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               + A   L L +  T     L G   +  ++ A+    G+ ++D +V+ + +    +
Sbjct: 356 VRATIVAGVALPLSLIATFAVMWLSGFSLDNLSLMALTIGTGFVIDDAIVMIENIH---R 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
                 +      K   E     V  +++     +P+    G V      FA+ +
Sbjct: 413 YIEDGETPLAAALKGAKEIGFTVVSLTISLIAVFIPLLFMTGIVGRMFREFALTL 467



 Score = 38.9 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 92/264 (34%), Gaps = 6/264 (2%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
              N          +   +       V  S   SL+            +   V + +    
Sbjct: 783  NTNTNASSNATGTVTTASGFSTTNQVPLSTFASLERKTAPLSISHIAQFPAVTVSFNLTR 842

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              + +  + +V+   + I    +I  T        +  +      ++ +A+ + I + + 
Sbjct: 843  DASLSDAVAVVEAARSAIGMPDSISATYTGDAAEFQSSLAGEPWLILAAAVTIYIVLGVL 902

Query: 688  FKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++     +  ++TL       L    +F ++ +L  +  ++ L+G    + +++ D   +
Sbjct: 903  YESAIHPITIMSTLPSAGVGALVAMMIFHMDLSLIGLIGIILLMGIVKKNAIMMIDFALE 962

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
                    +S  D I K+        + T++AA    LP+A+    G  +     I +  
Sbjct: 963  --AERVEGLSPYDSIVKASLLRFRPIMMTTLAALFGALPLALSTGTGSELRNPLGISIIG 1020

Query: 804  GIVVAASSSIFIAAPILLFIYDWR 827
            G++ +   +I+    I L +   R
Sbjct: 1021 GLLFSQLITIYSTPVIYLTMERIR 1044


>gi|75908758|ref|YP_323054.1| acriflavin resistance protein [Anabaena variabilis ATCC 29413]
 gi|75702483|gb|ABA22159.1| Acriflavin resistance protein [Anabaena variabilis ATCC 29413]
          Length = 1087

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 76/591 (12%), Positives = 174/591 (29%), Gaps = 32/591 (5%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            ++L   +  +G+   +        +D  PS               G  +       +  
Sbjct: 23  TLMLTLAVMVLGVFFII-----NLPVDLLPSITYPRI---------GVRIEAPGVSPEVA 68

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    +E  S  +         R+ Q  + L F      +   +  T       + L
Sbjct: 69  IDEVTRPLEEAFSATEGVVQIFSQTREGQVSLDLFFQPGGNIDQALNDATAAFNRARNGL 128

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
               ++  L      ++ +   +  +       ++  +    +   ++G+         S
Sbjct: 129 PDTIEEPRLFKIDPSQLPV--YEFALTSPSLEGLDLRVFAEEELARELGVVPGVAGVDVS 186

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +  ++    D  RL+ L      +       N    G     +            +  
Sbjct: 187 GGVQEEVRVNIDLDRLQALGVGLNDVLDELRNRNVDISGGRILGQNSEPLTRTVGRFQSA 246

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            E+  +    ++      + +  V+     +  RR +      I            L   
Sbjct: 247 DELRNLSFEVSSTASSNPSQQSTVNSQPSTINNRRVYLRDFAQIIDGSEQQRIYVSLNGE 306

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGS--LPIKLNIVEERNVGADLGSDSIYKG 364
              +     +   +    ++        LR  S      +             S S    
Sbjct: 307 PAVKVSVQKQPDANTINVVDAVKKRLEELRQSSVVPEGTVITPTLDESRFIRNSISNVTS 366

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           +  I   L  I + + +   +   +   +I L  +  + L+ L G ++ + S+ G+ LG+
Sbjct: 367 SGLIGTALAAIAVLLFLGSLRQTFIIVIAIPLATLAAIILMGLFGLSINVFSLGGLALGV 426

Query: 425 GLAVDSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           G+ VD++I++ E I E               ++ +    +       S +  S  T L+A
Sbjct: 427 GIVVDNSIVMLESIAEGVGMTPGKDSKSRLSHKQLIAQAETSSQEVESALVASTSTNLVA 486

Query: 474 TVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +     GG          +T+  S+  S+  A+++V  +   ++ +K    +      R
Sbjct: 487 VLPFLLIGGFIALLFNELILTITFSVAASIVIAVTVVPMLASRLLGWKFSSGLSNFWPLR 546

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
            F      A +       G+    L ++    LLF  G  +         L
Sbjct: 547 KFNERFEAATRGYGRFLAGILRWRLVTVAIAILLFGGGSLWMAPQIPQQIL 597



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 96/282 (34%), Gaps = 26/282 (9%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            N      G     +      +  V  S++  +       +     +  ++       +  
Sbjct: 807  NESAVQTGSQLQRLPLFVGNNRQVRLSDVAKIVEAQAPGEIQRINQRQVIIFAGNLTEGA 866

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688
            + +R +E V   I+ +     +        + +R+L     +   +++  + + + +++ 
Sbjct: 867  SLSRAIEQVNNVISNLELPEGVSVLPSAAAESNRQLQSSLQLLGGLASFLVFVVMAVQYN 926

Query: 689  KWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                 L  +    + +    G F L         T +   + L+G  VN+ +++ +    
Sbjct: 927  SLIDPL--VIMFTIPLALAGGIFGLYITNTAIGATVIVGAVLLVGIVVNNAIIMVE--LA 982

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
            N       +  R  I ++  + L   + T++   + + P+A+    G   +    + +  
Sbjct: 983  NQIRDRDKVDRRTAILQAAPQRLRPILMTTITTVLGMFPLALGIGEGSEFLQPLGVVVFS 1042

Query: 804  GIVVAASSSIFIAA----------------PILLFIYDWRAK 829
            G+ +A   ++FI                  P+ ++   WR +
Sbjct: 1043 GLSLATLLTLFIIPCFYTLLHDLLSGAWSKPVFIWWRVWRKR 1084



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 91/251 (36%), Gaps = 15/251 (5%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + +D S  +    SL        +   + +              +      V  + T
Sbjct: 286 DFAQIIDGSEQQRIYVSLNGEPAVKVSVQKQPDANTINVVDAVKKRLEELRQSSVVPEGT 345

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            I P                 +   G++G  ++AIA+L+++            +  + L 
Sbjct: 346 VITPTLDESRFIRNSIS---NVTSSGLIGTALAAIAVLLFLG---SLRQTFIIVIAIPLA 399

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-----KLYTTSISFR 758
               +    LFG+  N+ ++  +   +G  V++ +V+ + + + +     K   + +S +
Sbjct: 400 TLAAIILMGLFGLSINVFSLGGLALGVGIVVDNSIVMLESIAEGVGMTPGKDSKSRLSHK 459

Query: 759 DLI---DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
            LI   + S  E     V ++    ++VLP  + GG +   F   +   I  + ++SI I
Sbjct: 460 QLIAQAETSSQEVESALVASTSTNLVAVLPFLLIGGFIALLFN-ELILTITFSVAASIVI 518

Query: 816 AAPILLFIYDW 826
           A  ++  +   
Sbjct: 519 AVTVVPMLASR 529


>gi|297616938|ref|YP_003702097.1| protein-export membrane protein SecD [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144775|gb|ADI01532.1| protein-export membrane protein SecD [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 401

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 102/267 (38%), Gaps = 11/267 (4%)

Query: 572 GIDFKGGIQLGVLANR-------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
           GID +G  ++ +  ++             +   +  +   +I  Q     +    + +  
Sbjct: 135 GIDQEGQPKVDLTFDKEGAELFRKATKENLGKRIAIVLDKEIISQPVVRNEIPSGQAEIS 194

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G   A+      V  +   +     +     VGP +  + + K I   II  +A+LI++
Sbjct: 195 GGFESAKDAENLAVLLRSGALPVTLEMAQKWTVGPTLGSDSLAKSIKAGIIGLLAILIFM 254

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              ++      A  +L++     LG  AL      L  +A  L  IG +V+  +++Y+R+
Sbjct: 255 IGYYRLP-GFLADISLVVYSMLVLGVMALGKFTLTLPGIAGFLLSIGMAVDANIIIYERL 313

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           +  ++      +    +D            +++   I+ + +  +G   I  FA+ +A G
Sbjct: 314 KDELRA---GKTLLAAVDAGFKRAFWTIFDSNLTTLIAAVILMYFGIGPIKGFAVTLAIG 370

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           IV +  +++     +L +  +      
Sbjct: 371 IVTSMFTAVVFTRWLLKWAAESFRNPK 397



 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 132/372 (35%), Positives = 224/372 (60%), Gaps = 28/372 (7%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
             ++    +++++ ++R R+D++G+ E  IQ  G  R++I+L G +DP+   +++G TA+
Sbjct: 53  GQKITDDTLKKTVGVLRNRVDRLGVKEPVIQTQGDRRVIIELAGVKDPNEAIRVIGKTAE 112

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F                               KV ++G +L         +  +P VD
Sbjct: 113 LQF--------------------------IDENGKVWVTGRNLKD-AKAGIDQEGQPKVD 145

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF-TIETAGI 330
           ++FD+ GA  F + T++N+GK +A+VLD  +++ PV+   IPSG+A+ISG F + + A  
Sbjct: 146 LTFDKEGAELFRKATKENLGKRIAIVLDKEIISQPVVRNEIPSGQAEISGGFESAKDAEN 205

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +LR+G+LP+ L + ++  VG  LGSDS+ K   A + GL+ I++FMI  Y   G +A
Sbjct: 206 LAVLLRSGALPVTLEMAQKWTVGPTLGSDSLAKSIKAGIIGLLAILIFMIGYYRLPGFLA 265

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
           D S+ +  +L L +++L   TLTLP IAG +L IG+AVD+NI++ ER+++E R  +++  
Sbjct: 266 DISLVVYSMLVLGVMALGKFTLTLPGIAGFLLSIGMAVDANIIIYERLKDELRAGKTLLA 325

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           ++D GF RA+ TIFDSN+T LIA V+L +FG G ++GFA+T+ + I+ SMFTA+   R +
Sbjct: 326 AVDAGFKRAFWTIFDSNLTTLIAAVILMYFGIGPIKGFAVTLAIGIVTSMFTAVVFTRWL 385

Query: 511 MIFIIRYKKMKS 522
           + +     +   
Sbjct: 386 LKWAAESFRNPK 397



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 50/129 (38%), Gaps = 16/129 (12%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N   L+ L +M+  +G++           +   P     + ++LGLDLRGG H+V+E 
Sbjct: 1   MSNRTGLIKLIAMLIAVGIVA---------YVAYQPII---HNLNLGLDLRGGVHVVMEA 48

Query: 61  D---EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
                    +  L+     LR+ + + G+    ++   + ++ +  A  +        + 
Sbjct: 49  KERPGQKITDDTLKKTVGVLRNRVDRLGVKEPVIQTQGDRRVIIELAGVKDPNEAIRVIG 108

Query: 117 LFLQGVNSK 125
              +     
Sbjct: 109 KTAELQFID 117


>gi|51473370|ref|YP_067127.1| acriflavin resistance protein D [Rickettsia typhi str. Wilmington]
 gi|51459682|gb|AAU03645.1| acriflavin resistance protein D [Rickettsia typhi str. Wilmington]
          Length = 1008

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 78/685 (11%), Positives = 172/685 (25%), Gaps = 63/685 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L  MI  +G +     F  +  +   P                   + +E  
Sbjct: 9   KRPVFATVLSLMIVALGGI-----FFTKLQIRSAPDISVPI-------------INVEAH 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
            +      +   +    +++   +K             + ITLSF  S   E   + V  
Sbjct: 51  YEGADALYMEQEITTRIEKVLKTVKNLHYITSQSSTGSSSITLSFRLSTDIEVALNDVRS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  ++     D K   +          +      DQ     +E +  I       +   
Sbjct: 111 KISDISYMFPQDMKVPSVAKLDPDNFPSLFISVESDQYSD--LELTQIISNNLQSTLDKL 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           ES  +          +  E D  +L Q   +   +       N          +      
Sbjct: 169 ESVGKTQIYGGRKYIMRIEPDFKKLYQYKISLLDIETAIKEQNKDYPAGTIKTKSNNFIV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    E                      +I   E             I       
Sbjct: 229 TLIGSLSTPEEFG--------------------NIIIKEQNGCIIKLQDITKISLTSPDE 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +++ +              ++          +          
Sbjct: 269 DIIFRYNGKNSIALGLIKESKANIINLSNEVTKELERIKDSIPKGISISIAYDGAKPLKA 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV++V ++ +   K  L+   +I +++I T +++   G ++ + ++
Sbjct: 329 SIYAVFQTMFEALILVVLVTYLFLASAKISLIPFVTIPVSLIGTFSVMYAFGFSINVFTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I++ E I   N        +  +        I    IT     + +
Sbjct: 389 LAMILAIGLVVDDAIVMLENIFRYNEMGYKPIEASMLASKEIGFAIITMTITLAAVFIPI 448

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F  G   +    FA T+   +L S F A+++   M   I+                 L 
Sbjct: 449 GFIEGFIGKLFIEFAWTLAFCVLFSGFVAVTLTPMMSSHIVTKHNKNFAKFLVRFHDILQ 508

Query: 535 PDCIAIQFM-------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL------ 581
                  +        + +F  + +S    +               D             
Sbjct: 509 FVQNRYIYYLKLALDNKKKFVIIILSSCIVLIISFKFTNKTFVPQEDDGFLQVFLKGPEG 568

Query: 582 ---GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
                      +   + +N + +    +       E  F         +     + ++ +
Sbjct: 569 SSLEFSIKVVKEAEQILANYKDILGYLMVIGVGGSENVFGFIQLKDWSERSHSQKTIKNM 628

Query: 639 KKKITEIVPLSTIQNTEIVGPKISR 663
             K    +P  +I   +        
Sbjct: 629 LNKQFSKIPGMSIFAMDPRSMVSMN 653



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 90/235 (38%), Gaps = 9/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++ +++        +    +  V +      +V     + ++ K  T+++  +      
Sbjct: 777  ESIANIKEKISFKSYYHYNNSKSVTISSDLAPNVKINDAINIINKIATQLLDPNNAIIEY 836

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
            I   K   E+    ++  + S + + + +  +F+  F    +  L +  + T G  AL  
Sbjct: 837  IGEIKQMEEIDNNILITFVFSLVFIYLVLAAQFE-SFTDPLLILLAVPFSITGGVLALLI 895

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   N+ +   ++TLIG    + +++ +      ++    ++ R+ I +S    L   +
Sbjct: 896  TGDSINMYSNIGLITLIGLVTKNSIMIVEFAN---QIRAKGVNVREAIIESSKLRLRPIL 952

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             T++ A +  LP+      G +   S    +  G+ +    +IF+   I      
Sbjct: 953  MTTITAIVGALPLVFADGAGAAARNSIGFVIVGGLSIGTIFTIFVIPVIYQTFKK 1007



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 84/245 (34%), Gaps = 7/245 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G I +       + L  +     +    DI F+        L  ++    + +  +  + 
Sbjct: 241 GNIIIKEQNGCIIKLQDITKISLTSPDEDIIFRYNGKNSIALGLIKESKANIINLSNEVT 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
              ++I + +P     +    G K  +  I      +  + I +++           +L 
Sbjct: 301 KELERIKDSIPKGISISIAYDGAKPLKASIYAVFQTMFEALILVVLVTYLFLASAKISLI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              T+ + +  T      FG   N+  + A++  IG  V+D +V+ + +    +      
Sbjct: 361 PFVTIPVSLIGTFSVMYAFGFSINVFTLLAMILAIGLVVDDAIVMLENI---FRYNEMGY 417

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
              +    +  E     +  ++      +P+     + G +   FA  +AF ++ +   +
Sbjct: 418 KPIEASMLASKEIGFAIITMTITLAAVFIPIGFIEGFIGKLFIEFAWTLAFCVLFSGFVA 477

Query: 813 IFIAA 817
           + +  
Sbjct: 478 VTLTP 482


>gi|317477940|ref|ZP_07937123.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           4_1_36]
 gi|316905854|gb|EFV27625.1| AcrB/AcrD family multidrug resistance protein [Bacteroides sp.
           4_1_36]
          Length = 445

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 56/471 (11%), Positives = 125/471 (26%), Gaps = 41/471 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +I  +G++      L    + ++P   P               + +    
Sbjct: 9   RPVLSTVISILIVILGVI-----GLATLPITQYPDIAPPT-------------VSVSATY 50

Query: 63  DDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADKVTL 117
                  +       L   +   E +   S          I++ F      +  A  V  
Sbjct: 51  QGANAQTVLNSVIAPLEDQINGVENMMYMSSSATNSGSGDISIYFKQGTDPDMAAVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +      L  +  K  + T   +   +++     ++   +            I ++   
Sbjct: 111 RVSMAQGLLPAEVTKIGVTTRKRQTSMLMVFSIYDEKDQYNIEFLENYANINLIPEVKRV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        +     P  + Q       +       N        G    R + 
Sbjct: 171 NGVGDAMVLG-QDYSMRIWLKPDVMAQYKLIPNDVVAALSEQNIEAAPGQLGE---RGNQ 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +  K  +              +T +    +                N+       
Sbjct: 227 TYQYTLRYKGRL-------------QQTTEFENIVIKALENGEILRLKDVANVELGRLSY 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
               ++        I    A  +   TI     L     +         + +        
Sbjct: 274 GFNNMVNGHKAVSCIIFQMAGSNATQTISDIEALLDDYSSKLPAGLKINIAQSANDFLFA 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      LV IV+++ +   +  L+   +I + +I T  +L L+G ++ L ++
Sbjct: 334 SIHEVIKTLIEAFILVFIVVYIFLQDMRSTLIPAIAIPVALIATFFVLKLIGFSINLLTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSN 467
           + +VL I + VD  I+V E +  +  +   S   +     S     I    
Sbjct: 394 SAMVLAIAIVVDDAIVVVEGVHAKLDQGYKSARTASIDAMSELGGAIVSIT 444


>gi|257424029|ref|ZP_05600458.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257426710|ref|ZP_05603112.1| MMPL domain-containing protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257429345|ref|ZP_05605732.1| MMPL domain-containing protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434953|ref|ZP_05611004.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           M876]
 gi|282912740|ref|ZP_06320532.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus M899]
 gi|282922370|ref|ZP_06330060.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|293497802|ref|ZP_06665656.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293511385|ref|ZP_06670079.1| antibiotic transport-associated protein [Staphylococcus aureus
           subsp. aureus M809]
 gi|293549990|ref|ZP_06672662.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus M1015]
 gi|257273047|gb|EEV05149.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257276341|gb|EEV07792.1| MMPL domain-containing protein [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257279826|gb|EEV10413.1| MMPL domain-containing protein [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257285549|gb|EEV15665.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           M876]
 gi|282314591|gb|EFB44977.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           C101]
 gi|282322840|gb|EFB53159.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus M899]
 gi|290919037|gb|EFD96113.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus M1015]
 gi|291096733|gb|EFE26991.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291465343|gb|EFF07875.1| antibiotic transport-associated protein [Staphylococcus aureus
           subsp. aureus M809]
          Length = 822

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 75/592 (12%), Positives = 198/592 (33%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           IN+   +  A I+ + +  +    +       L    +    +
Sbjct: 95  KDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 154

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 155 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 214

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 215 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAVGTAGSAVIF 274

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    ++ K+  +  
Sbjct: 275 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKHIKVNKLQS 334

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG-------- 577
           N                  A      I ++ +   +  +     + G+            
Sbjct: 335 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 394

Query: 578 --------------GIQLGVLANRP---------VDLSVVRSNLESLQIGDISFQNFDGE 614
                          + + V   +            +     + +++ I      + D +
Sbjct: 395 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 454

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 455 YALMVVIPKQGPNAESTNDLVHDLRDYNKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 514

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 515 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 574

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 575 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 631

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 632 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 683



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 72  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTS 131

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 132 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 191

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 192 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 248

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 249 QVMKTETDYIKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 308

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 309 VFSALTLLPALISIFHKHIKVNK 331


>gi|221141434|ref|ZP_03565927.1| resistance-nodulation-cell division acriflavin:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|304379754|ref|ZP_07362485.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|269942125|emb|CBI50538.1| putative transport protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|302752411|gb|ADL66588.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Staphylococcus aureus subsp. aureus str.
           JKD6008]
 gi|304341718|gb|EFM07626.1| membrane protein YdfJ [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
          Length = 822

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/592 (12%), Positives = 188/592 (31%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           IN+   +  A I+ + +  +    +       L    +    +
Sbjct: 95  KDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 154

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 155 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 214

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 215 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVVF 274

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++ +A++++ A++    +  K+  +  
Sbjct: 275 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFAVLSALTLLPALISIFHKRIKVNKLQS 334

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
                                                                       
Sbjct: 335 KFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 394

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 395 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 454

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 455 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 514

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 515 LFASVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 574

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 575 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 631

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 632 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 683



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 72  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTS 131

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 132 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 191

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 192 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 248

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       V+  +   I+V  +++ G   +       A  +V A
Sbjct: 249 QVMKTETDYIKGIGLAIGTAGSAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFA 308

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 309 VLSALTLLPALISIFHKRIKVNK 331


>gi|3982836|gb|AAC83691.1| putative membrane protein [Brucella abortus]
          Length = 518

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 152/497 (30%), Positives = 263/497 (52%), Gaps = 16/497 (3%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L+ +   L        L  +    + + +       + + A      I+RQR++++G
Sbjct: 30  RETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNAGKTDLETTA-----NIMRQRLEELG 84

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR- 234
                ++  G ++I +++PG  D   L+ +L     +SF  +    S    + G      
Sbjct: 85  YGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPPADS 144

Query: 235 ------DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                 D     YL++    ++G  +  A A+      +PV+ ++ D+ G RR  ++T  
Sbjct: 145 EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQ 204

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                 A+V+D +V++AP ++  + + + QI G F ++ A  +A +LR+G+LP  + ++E
Sbjct: 205 GNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLE 264

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ER + + LG D       A +   +++ LFM++ YG  G++A  ++ +N+++  A+LSL+
Sbjct: 265 ERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGVIALVALVVNIVILTAVLSLI 324

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           GA+++L SIAG+VL IGLAVD++IL+ ER+RE+ RK  SV  +++ GF RA STI D+N+
Sbjct: 325 GASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL 384

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T LIA +VLF  G G V GFA+T+ + I  ++FT ++  R ++   +R  K K +    L
Sbjct: 385 TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRL 444

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-NR 587
               L+P    I FMR +F  +GIS+L     + L    G NYGIDF+GG  + + A N 
Sbjct: 445 K---LVPTVTHIPFMRLQFVTLGISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNG 501

Query: 588 PVDLSVVRSNLESLQIG 604
             +L  +   L  L I 
Sbjct: 502 DANLEDINERLAELNID 518



 Score =  112 bits (280), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 60/124 (48%), Gaps = 4/124 (3%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +++ + +     + A+  L+++I       +L G   +L ++A ++  IG +V+  +++Y
Sbjct: 293 LFMVLSYGIL-GVIALVALVVNIVILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIY 351

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R++ +      S    ++      L   V  ++   I+ L + + G   +  FA+ +
Sbjct: 352 ERVREDRR---KGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHGFALTV 408

Query: 802 AFGI 805
           A GI
Sbjct: 409 AIGI 412



 Score =  100 bits (247), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/242 (18%), Positives = 90/242 (37%), Gaps = 7/242 (2%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           + W   L  +   + L+IA PNF  +  L+  P  +PK ++SLGLDL GGS L+L+V   
Sbjct: 5   SRWKSALIWLAVLVSLIIASPNFFSRETLENLPDFLPKKQVSLGLDLSGGSRLILQVQNA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L+  ++ +R  L++ G G   +  + +N+I +        + + D +T+     
Sbjct: 65  G--KTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLS 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              ++     +  +  T    S ++   +   V     +  +       D     +++I 
Sbjct: 123 FRAMDDTMSPDDAIRGTPPADSEIVYSFDDPPVGYLLKKTPILTGHDITDA----KASIS 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++     +    RL  L     + SF  V+ N                   +  
Sbjct: 179 ADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTVSGPLDTSELQIEGA 238

Query: 243 VE 244
            +
Sbjct: 239 FD 240


>gi|115358461|ref|YP_775599.1| acriflavin resistance protein [Burkholderia ambifaria AMMD]
 gi|115283749|gb|ABI89265.1| acriflavin resistance protein [Burkholderia ambifaria AMMD]
          Length = 1055

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/636 (12%), Positives = 171/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  P+                  ++   
Sbjct: 8   LRRPYTFIVMAVMIVL-----ATPLALMRTPVDVLPAVNIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSD-----ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           + + F    +           L + +        +       + +        +    + 
Sbjct: 50  NYNGFSASEMTNRITAVHERILTTTVNNIEHIESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +   +   +     Q+ 
Sbjct: 110 VSSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LADIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  L     T A +       N         +     
Sbjct: 168 TVRGAQIPFPYGGRTRVVAIDLDPQVLLAKGLTPADIVNAVNTQNLVLPTGTAKMGQSEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +I                     D+    +     +     ++    A
Sbjct: 228 RIDTNASADTIADI--------------------NDLPIQTVNGATTYLREVASVRDGFA 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLMSILKTGDASTLKVVSDLKALLPKVIPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I         V  ++  G        F S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTGVHDAILEGAGEIAVPAFVSTLCICIVFV 447

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + + R ++  +      SRF 
Sbjct: 448 PMFFLTGVARFLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFRPQQAGTGPDRSTSRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I       F R R W + +  +  +              +       LG       D  
Sbjct: 508 RIHHAFNGAFERLRAWYIVLLSMLLVRRRFYAMCFLGFCVLSTGLVFVLGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R +L +     I       ++   V  +  P D 
Sbjct: 568 NIRLHLRAPTGYRIEETARLTDQVERVIREAVPPDE 603



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 61/152 (40%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  ++ +     W   L    ++ L I  +L   +  G   N+  +  +   +G
Sbjct: 338 ALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + + +++ L        D I +   E    +  +++   I  +PM    G
Sbjct: 398 ILVDDATVTIENIERHLHL---GTGVHDAILEGAGEIAVPAFVSTLCICIVFVPMFFLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  +V A  +S  ++  ++  +
Sbjct: 455 VARFLF-VPLAEAVVFAMLASYVLSRTLVPTL 485



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  I+ +   +        + G   ++ A+   +  +G
Sbjct: 890  VAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 949

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +              ++    +   + T++A  I ++PMA+   
Sbjct: 950  VATANSILVVSFARQRLAA---GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1006

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1007 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1035


>gi|289665867|ref|ZP_06487448.1| RND superfamily protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 1028

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 84/645 (13%), Positives = 186/645 (28%), Gaps = 47/645 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++ +  +  +GL+ A      +  L+  P                   L      
Sbjct: 10  RPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGST 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQG 121
            D V   L   ++E  + +        +       I + F+D  R     A      L  
Sbjct: 56  PDEVERNLVRPAEEALATMTGIKRMRSTATADGANIFIEFSDWDRDIAIAASDARERLDA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V      D ++  +   +  +  ++  +      ++ A +      R+   +I       
Sbjct: 116 VRDDFPEDLQRFHVFKWSSSDEPVLKVRLASQTDLTGAYDMLD---REFKRRIERIPGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S     ++     P RL     +   +S                         N  
Sbjct: 173 KVEISGAPPNEVEIAIAPDRLTAHDLSLNDLSERL-------------------GKLNFS 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +   +++ +G  +            +    +      A+         +      +  GR
Sbjct: 214 VSAGQIDDNGQRIRVQPIGELRDLQELRELVL----NAKGVRLGDIAEVRLKPTRMNYGR 269

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSDS 360
            L            +   +     + A      +RA      + +    N   A   S +
Sbjct: 270 RLDGRPAIGLDVYKERSANLVEVSKAALKEVEDIRAQPSMRDVQVKVIDNQGKAVTSSLA 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G+
Sbjct: 330 ELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   F
Sbjct: 390 LLAVGMLVDNAVVVVESIYQERERMPDQPQLAALLGTRSVAIALSAGTLCHCIVFVPNLF 449

Query: 480 FGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                    +   AIT+ +S+L S   AIS++  +   +     + S             
Sbjct: 450 GETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPMVTSERGVIARLQRRYA 509

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +A       +   GI ++ +I  + +  T    +G D      +            + 
Sbjct: 510 KVLAWTLAHRGWSVAGIILVSAISLVPMKLTKIDMFGGDGGNEAFIQYQWKGSYTREQLG 569

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
             +  ++    + +                G +   T     VK 
Sbjct: 570 EEIGRVENYLEANRAKYHITQIYSWFSEVEGSNTVVTFDASKVKD 614



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 86/237 (36%), Gaps = 11/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI-VPLSTIQNTE 655
            +L  +QI   + Q     +   + ++    + V        ++  +  +  P       +
Sbjct: 768  SLVEVQIRPAATQIGRTNRQTTLTIKANLAEKVTVPEARAAMESPLKAMRFPAGYSYTFD 827

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E + + +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 828  GGDYQNDGEAMNQMVFNLVIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 887

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +     L    +     + +   E L   + 
Sbjct: 888  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN---NLRRRGMGRTQALVEGSRERLRPIMM 944

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T   A ++++P+          G      A  +A G+  +   S+     I   + D
Sbjct: 945  TMGTAILAMVPISLTSTTMFSDGPPYFPMARAIAGGLAFSTVVSLLFLPTIYAILDD 1001



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +    +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDIRAQPSMRDVQVKVIDNQGKAVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPDQPQLA-----ALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|186683981|ref|YP_001867177.1| preprotein translocase subunit SecD [Nostoc punctiforme PCC 73102]
 gi|186466433|gb|ACC82234.1| protein-export membrane protein SecD [Nostoc punctiforme PCC 73102]
          Length = 470

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ I+  I   +     +LI++ + ++    L A  +L++    T   FAL G+ 
Sbjct: 283 GATLGKDSIQSSIYAGVGGLTLVLIFMVVYYRLP-GLIADVSLVIYSLLTWATFALLGVT 341

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      S    ++          + +++
Sbjct: 342 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKSLYRSVESGFYRAFSSILDSNV 398

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             +I+   +   G  ++  FA+ +A G+ V+  ++I  +  +L  
Sbjct: 399 TTWIACAALFWLGSGLVKGFALTLALGVAVSMFTAITCSRTLLFL 443



 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 127/497 (25%), Positives = 192/497 (38%), Gaps = 87/497 (17%)

Query: 43  RISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYS-------------DELRSFLKKEG 85
            I LGLDLRGGS L ++V             L+                + +   +    
Sbjct: 26  PIPLGLDLRGGSQLTIQVKPSAEIPKITERELEGVKRVVEGRINGLGVSEPVIQTV---- 81

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
                     +KI +        E     +    Q        + +  LL     +    
Sbjct: 82  --------GSDKILVQLPGVNDPEQAERVLGGTAQLEFRTQKPNTETQLLAFQASRAELK 133

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
              +         AI ++ E +++    I                               
Sbjct: 134 AKQEELRKSTDKAAIAKNQEDLQKNNQAI------------------------------- 162

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                                    ++L+D+ G                     N+    
Sbjct: 163 ------------AELFESTNPPLSGKYLKDAYGEP---------------TQGKNWHVTI 195

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                         +      R         ++    +        I  G A I+G FT 
Sbjct: 196 RFDQKGGELFANLTKNLAGTGRAIGVFLDNELISAPSVGIEFAAAGITGGSAIITGRFTA 255

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           + A  L   LR G+LP+ + I E R VGA LG DSI     A V GL L+++FM+V Y  
Sbjct: 256 QEANDLGVQLRGGALPVPVEIAERRTVGATLGKDSIQSSIYAGVGGLTLVLIFMVVYYRL 315

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD S+ +  +LT A  +LLG TLTLP IAG +L IG+AVD+N+L+ ER REE R  
Sbjct: 316 PGLIADVSLVIYSLLTWATFALLGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAG 375

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S++ S++ GF RA+S+I DSN+T  IA   LF+ G G V+GFA+T+ L + +SMFTAI+
Sbjct: 376 KSLYRSVESGFYRAFSSILDSNVTTWIACAALFWLGSGLVKGFALTLALGVAVSMFTAIT 435

Query: 506 IVRAMMIFIIRYKKMKS 522
             R ++   I    ++ 
Sbjct: 436 CSRTLLFLAISIPSLRK 452


>gi|90413956|ref|ZP_01221941.1| putative RND efflux transporter [Photobacterium profundum 3TCK]
 gi|90325018|gb|EAS41533.1| putative RND efflux transporter [Photobacterium profundum 3TCK]
          Length = 1021

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 74/631 (11%), Positives = 170/631 (26%), Gaps = 43/631 (6%)

Query: 50  LRGGSHLVLEVDEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS 105
           L  G  + +  +        V G++        +  +            ++ IT+     
Sbjct: 40  LETGV-ITITTNYPGASSSSVQGYVTQPLQAQIAQTEGIDYMTSESSLGESLITVYLKLD 98

Query: 106 RFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
              +    ++   +Q V  +L    + + ++ +T +   + LS ++         + S  
Sbjct: 99  YPSDKALTEILSLVQQVKYRLPEGVQDSSILKSTSESPVLYLSFSSDT---LATQQISDY 155

Query: 166 IIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
           + R             +     +    +    +P+++     T   +       N     
Sbjct: 156 LSRVVKPIFSTVNGVSKVDLLGQRDFAMRIWLNPTKMAAFGITATDIQNAVKGSNAVSAA 215

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                 ++                         A+ D  T +   +IS      R     
Sbjct: 216 GKVKNDYIE--------------------IDVNAHTDANTVEQFKNISLKAKDGRIIHLE 255

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
               +                       S  +  +    ++ A  +   +          
Sbjct: 256 DVATVELGANSYDATVHFNGKKSVMVAISNTSSSNPLTVVQDAYKVLPDVMNSLPQGVHA 315

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            V   +      S      T    A +V+IV+F  +   +  L+   +I L++I ++  +
Sbjct: 316 NVVYDSTKFITTSIDEVIKTLLEAALIVVIVIFAFLGSIRAMLIPLVTIPLSLIGSMFFM 375

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             LG ++ L ++  +VL I L VD  I+V E       K      +  +        +  
Sbjct: 376 MALGFSINLLTLLAMVLAISLVVDDAIVVVENTFRHLEKGVPPVKAALLSAKEIAGPVIS 435

Query: 466 SNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-- 520
             IT       + F G   G     FA T+  S+LIS F A+++   M   ++    +  
Sbjct: 436 MTITLAAVYAPIGFMGGLTGKLFTEFAFTLAGSVLISGFIALTLTPMMCSKVLSKSTLEG 495

Query: 521 ---KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
              K ID           + +++              +          T       + +G
Sbjct: 496 ELVKKIDAVIAVITRHYQNMLSVVLRNRIMVWPLALTILVSLVFMFTHTASELAPQEDQG 555

Query: 578 GIQLGVLANRPVD-------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
            + +        +          +   +      D+       + +          D   
Sbjct: 556 VMMMMGKGPSYANTHYLEHFTQPLSKIVSGYPENDMDMMVNGYQNDSTFFGLAVLKDWSE 615

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
           + +  + V  +                 P  
Sbjct: 616 REKTTKQVMTQFQADSKTVPGVQVYTFSPPD 646



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 93/312 (29%), Gaps = 8/312 (2%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI-CLLFTHGL 569
           +  + +      I +NP            IQ        V  +       I   +  H  
Sbjct: 173 VDLLGQRDFAMRIWLNPTKMAAFGITATDIQNAVKGSNAVSAAGKVKNDYIEIDVNAHTD 232

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
              ++    I L     R + L  V +        D +      +   +        + +
Sbjct: 233 ANTVEQFKNISLKAKDGRIIHLEDVATVELGANSYDATVHFNGKKSVMVAISNTSSSNPL 292

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRF 688
              +    V   +   +P     N      K     I + I  ++  + I +++      
Sbjct: 293 TVVQDAYKVLPDVMNSLPQGVHANVVYDSTKFITTSIDEVIKTLLEAALIVVIVIFAFLG 352

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  + T+ L +  ++ F    G   NL  + A++  I   V+D +VV +      
Sbjct: 353 SIRAMLIPLVTIPLSLIGSMFFMMALGFSINLLTLLAMVLAISLVVDDAIVVVEN---TF 409

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +     +        S  E  G  +  ++       P+   GG        FA  +A  +
Sbjct: 410 RHLEKGVPPVKAALLSAKEIAGPVISMTITLAAVYAPIGFMGGLTGKLFTEFAFTLAGSV 469

Query: 806 VVAASSSIFIAA 817
           +++   ++ +  
Sbjct: 470 LISGFIALTLTP 481



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 77/243 (31%), Gaps = 8/243 (3%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
               +     L SL     S Q    ++   +         +    + E  K        +
Sbjct: 766  QSNNQQMVPLSSLVTITQSIQPSAVDQFQQLNSAMIEAKMMPGVSIGEAYKVMEQGAKDI 825

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDIT 705
                 +     ++ + L     +        ++IY+ +      +   L  +T++ L I 
Sbjct: 826  LPKAYSVDSSGQLRQFLQEGSSLVATFFLALVIIYLVLAAQFESFRDPLIVLTSVPLSIF 885

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              +          N+     ++TLIG      +++ +    N       +       +S 
Sbjct: 886  GAMLPLYFGVDTLNIYTEVGLVTLIGLISKHGILIVE--FANQLQREQGLDKASAALQSA 943

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  L   + T+ A  I V+P+ +    G     S  + +  G+ V    ++F+   +  F
Sbjct: 944  SVRLRPVLMTTAAMVIGVVPLLIAAGAGAQSRFSIGLVITVGMSVGTLFTLFVVPTVYTF 1003

Query: 823  IYD 825
            +  
Sbjct: 1004 LAG 1006


>gi|126729361|ref|ZP_01745175.1| Acriflavin resistance protein [Sagittula stellata E-37]
 gi|126710351|gb|EBA09403.1| Acriflavin resistance protein [Sagittula stellata E-37]
          Length = 1022

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 77/574 (13%), Positives = 168/574 (29%), Gaps = 38/574 (6%)

Query: 27  LPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
             +  + R P+  +P   ++ GL   G           + V   +    DEL   ++   
Sbjct: 29  FMRLPITRMPNVDLPVVTVTSGLPGNG---------PSEIVTQIITPLEDELVD-VQGVR 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
                       IT+ F  +   +   + V   +      +     + ++        +I
Sbjct: 79  HITSVAGDGTASITIEFEINVETDRAVNDVRDAVAAARGDMPDAASEPIVQRVEVIGGAI 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +    +         E S  +      QI  +              ++  E  P RL   
Sbjct: 139 LTYAASSSDSSIE--ELSTFVDDVVAPQIQGAAGVSSVDRIGGAEREINVELSPDRLLAH 196

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T + ++      N    G    +   + +  +    +   E+    ++          
Sbjct: 197 GLTVSDVNGQLRQQNVDAGGGEGRLAGQQVAIRSLGAAKTLEELGATRISLP-------- 248

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                                   I    +   +  +L    +        +  S     
Sbjct: 249 ------------SGGTIRLDQIGTIADGASDRENFALLDGRPVVAFGIFRSSGASDLLAA 296

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A    A L      I    +++     +   ++         A  +L+V+ + +   +
Sbjct: 297 EAAREKLAELSRDYPNITFTQIDDATTYTESNFETAMNTLLEGSALTILVVM-IFLRDWR 355

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             +V   ++ L++I T  ++ LLG +L   S+  I L +G+ VD  I+  E I       
Sbjct: 356 ATVVTLVALPLSIIPTFFVMDLLGFSLNTISLLAITLVVGILVDDAIVEIENIVRHIHMG 415

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFT 502
           ++ + + +        T+   ++T +     +       G   R F +T+ +++L S+  
Sbjct: 416 RNAYDAANEAAQEIGMTVIAISLTIVAVFAPVGVMPGIAGKFFREFGLTVAVAVLFSLLV 475

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           A  I      + +R  K  S   + L     +         RA    VG++I        
Sbjct: 476 ARLITPLFAAYFMRSDKGHSEPEDGLVMRRYMGVLRWTLHNRAVTLLVGLAIFAGSIFSA 535

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            L            G   + V      +   +  
Sbjct: 536 TL-LPTEFVPAADGGRATVTVELPPGANTDELED 568



 Score = 86.7 bits (212), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 76/255 (29%), Gaps = 6/255 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G  ++ + +   + L  + +  +     +                +      +       
Sbjct: 241 GATRISLPSGGTIRLDQIGTIADGASDRENFALLDGRPVVAFGIFRSSGASDLLAAEAAR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
               +++   P  T    +                 +  SA+ +L+ +     W   +  
Sbjct: 301 EKLAELSRDYPNITFTQIDDATTYTESNFETAMNTLLEGSALTILVVMIFLRDWRATVVT 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           +  L L I  T     L G   N  ++ A+  ++G  V+D +V  + +   ++      +
Sbjct: 361 LVALPLSIIPTFFVMDLLGFSLNTISLLAITLVVGILVDDAIVEIENI---VRHIHMGRN 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
             D  +++  E     +  S+       P+ V     G     F + +A  ++ +   + 
Sbjct: 418 AYDAANEAAQEIGMTVIAISLTIVAVFAPVGVMPGIAGKFFREFGLTVAVAVLFSLLVAR 477

Query: 814 FIAAPILLFIYDWRA 828
            I      +      
Sbjct: 478 LITPLFAAYFMRSDK 492



 Score = 45.5 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 75/212 (35%), Gaps = 7/212 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            + S ++ +        ++ + V +     D          +             +    
Sbjct: 764 AVASARLANGPATIERYDRQYRVAIGATLADGAFLGDATGAIDALPQAKDLPDGARIQPA 823

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              +   E+     + +    + + + + + F  +   +  + +L L +   +    ++G
Sbjct: 824 GDVETMGEIFSGFAMAMGAGILLVYVVLVLLFGSFVTPVTILLSLPLAVGGAIFALYIYG 883

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L+ V   L L+G    + +++ +  ++ ++     +S  + +  + ++     V T
Sbjct: 884 AGIGLSVVIGFLMLMGIVTKNAIMLVEFAQEAVQG---GMSRAEAMVDAAHKRARPIVMT 940

Query: 776 SMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
           ++A    ++P A+    GG +    AI +  G
Sbjct: 941 TIAMTAGMVPSALAHGEGGEIRAPMAIAVIGG 972


>gi|320144510|gb|EFW36274.1| MMPL family protein [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 822

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/592 (12%), Positives = 189/592 (31%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 95  KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 154

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 155 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 214

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 215 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVVF 274

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++ +A++++ A++    +  K+  +  
Sbjct: 275 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFAVLSALTLLPALISIFHKRIKVNKLQS 334

Query: 526 NPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSICLLF 565
                                                                       
Sbjct: 335 KFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 394

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSV-----------VRSNLESLQIGDISFQNFDGE 614
                +G  F G I + +      D                 + +++ I      + D +
Sbjct: 395 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 454

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +      ++        I+ ++ +K      
Sbjct: 455 YALMVVIPKQGPNAESTNDLVHDLRDYHKDAQDKYGVKTEISGQSVINIDMSKKLNEAIP 514

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 515 LFASVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETT 574

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 575 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 631

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 632 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 683



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 72  TKDDGIVQPNITKDIKKTLDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 131

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 132 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 191

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 192 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 248

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  +I       V+  +   I+V  +++ G   +       A  +V A
Sbjct: 249 QVMKTETDYIKGIGLAIGTAGSAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVVFA 308

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 309 VLSALTLLPALISIFHKRIKVNK 331


>gi|322419592|ref|YP_004198815.1| CzcA family heavy metal efflux pump [Geobacter sp. M18]
 gi|320125979|gb|ADW13539.1| heavy metal efflux pump, CzcA family [Geobacter sp. M18]
          Length = 1045

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 80/681 (11%), Positives = 186/681 (27%), Gaps = 46/681 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++++++++   G+         ++ +D  P       I                 
Sbjct: 11  RNRVIVLMMFALLIAWGVWAV-----YKTPVDAIPDLSDNQVI---------VFTDYPGR 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          L +      S     + I + F D         +V   L  
Sbjct: 57  SPQVVEDQVTYPLAVNLQGLPQVRAVRASSAFGFSMIYVIFEDKADIYWARTRVLERLNY 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       L    T        +       +          +R    Q+       
Sbjct: 117 AASLLPPGVVPTLGPDGTGVGHVFWYTLEGKGYDLEQLRTLQDWFVRY---QLNTVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + +   + DP+RL        ++       NN   G +            + 
Sbjct: 174 EVASIGGFVREYQVDLDPNRLFAYNIKVGQVMEAIKKSNNDVGGRLLEQADAEFLIRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   ++  I +                       G   + +                 
Sbjct: 234 YIKSTADLENIVVGADM------------------RGTPIYVKNLGTVQLGGAIRRGMLD 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I   +   +    I+        L  G  P    +V          +   
Sbjct: 276 MNGQGEAVGGIVVMRYGENAKDVIDRVKEKIVSLEKGLPPGVKIMVSYDRSDLIERAIHT 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K +    + +V +V+ + +L+ +  LV   ++ + V+++   + L+G +  + S+ GI 
Sbjct: 336 LKASLIEESIVVSLVILVFLLHFQSALVIVLTLPIAVLISFITMKLMGVSSNIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVF------CSLDMGFSRAYSTIFDSNITALIATV 475
           + IG+ VD+ +++ E       +             +     +    IF S    +++ V
Sbjct: 396 IAIGVLVDAGVIMVENCYRHLSEMPPEERKEKRLEVIITSAKQVGRAIFFSLAIIILSFV 455

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   S++ S   AI++V  +M F +R K          + F 
Sbjct: 456 PVFLLEGQEGKMFHPLAFTKTFSMMGSALIAITLVPVLMYFFMRGKMPPESSNPVSTFFI 515

Query: 533 LIPDC--IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            +       +   +     + ++ L     + +         +D    + + V       
Sbjct: 516 RVYSPVIRWVLKWKKTTIALNVAALAIAIPMFMSIGSEFMPPLDEGSLLYMPVTLPNISI 575

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               R       +     +                   V+    + ++K K      ++ 
Sbjct: 576 NEAKRLIQVQDTVIKSVPEVEHVLGKVGRAETSTDPAPVSMFESIIILKPKEKWRAGVTK 635

Query: 651 IQNTEIVGPKISRELIRKGIV 671
                 +  K+ +  +R G  
Sbjct: 636 ADIVSELDAKLQQIGVRNGWT 656



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 87/287 (30%), Gaps = 11/287 (3%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                +       G  Y         + V A+       V++       G I     D  
Sbjct: 218 RLLEQADAEFLIRGRGYIKSTADLENIVVGADMRGTPIYVKNLGTVQLGGAIRRGMLDMN 277

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                             + +    K+    +        +I+      +LI + I  + 
Sbjct: 278 GQGEAVGGIVVMRYGENAKDVIDRVKEKIVSLEKGLPPGVKIMVSYDRSDLIERAIHTLK 337

Query: 675 ISAI-----AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            S I       L+ +     +  AL  + TL + +  +     L G+  N+ ++  +   
Sbjct: 338 ASLIEESIVVSLVILVFLLHFQSALVIVLTLPIAVLISFITMKLMGVSSNIMSLGGIAIA 397

Query: 730 IGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           IG  V+  V++ +   R    M          ++I  S  +      ++     +S +P+
Sbjct: 398 IGVLVDAGVIMVENCYRHLSEMPPEERKEKRLEVIITSAKQVGRAIFFSLAIIILSFVPV 457

Query: 787 AVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +  G    +    A    F ++ +A  +I +   ++ F    +   
Sbjct: 458 FLLEGQEGKMFHPLAFTKTFSMMGSALIAITLVPVLMYFFMRGKMPP 504



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 90/282 (31%), Gaps = 12/282 (4%)

Query: 563  LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                              +  +    +D + V  +L +           + E   L  + 
Sbjct: 758  RFPIRLRYMREMRSDIPSIQRILVSGMDGAQVPLSLVTRLKVSTGAPEINSEGGLLRSIV 817

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
            +           +   K  + +               +   ++  K  + +++ A  ++I
Sbjct: 818  FLNVRGRDMGGFVNEAKTVLEKQ-MKLPPGYYVAWSGQWENQVRAKARLQMLVPAGILII 876

Query: 683  YIWIRFKWYFAL-GAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVV 739
            +I + F ++ AL  ++  L +      G + +   G   ++      + L G +V   VV
Sbjct: 877  FILLYFTFHSALEASMVMLSVPFALVGGVYLVKMLGYNMSVAVWVGFIALYGIAVETGVV 936

Query: 740  VYDRMRKNMKLY-----TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            +   + + +         T     D   +     L   + T   A I ++P+      G 
Sbjct: 937  MVIYLHEALDKKLLKGPVTEQDIYDATFEGAVLRLRPKLMTVAVALIGLVPIMWSSGTGA 996

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             V+   A PM  G++ +A   + +   I + +     K  ++
Sbjct: 997  DVMKPIAAPMIGGMISSAVHVLIMTPVIFVLMKKRDLKKGKL 1038


>gi|90410844|ref|ZP_01218859.1| AcrB/AcrD/AcrF family protein [Photobacterium profundum 3TCK]
 gi|90328475|gb|EAS44773.1| AcrB/AcrD/AcrF family protein [Photobacterium profundum 3TCK]
          Length = 1032

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/626 (11%), Positives = 167/626 (26%), Gaps = 47/626 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+  +  +L   +  +G++        +  +  FP                     +   
Sbjct: 9   RHPVFAAVLSIAMVLLGVIS-----FQKLDIQYFPEHNSPKAT---------VSASITGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF---KENIADKVTLF 118
             +F++  +     +  + +          ++    + + F D        N+ +K+   
Sbjct: 55  SAEFMSRNVADKLIDAATGIDSVKTMSTDCQEGSCSLNILFNDDVDDIEYTNLMNKLRSS 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++ +N        K  +   +    +       ++       +    I +Q + Q    +
Sbjct: 115 VEAINDFPPSMTDKPTVTDDSSDTSAASNIVTFVNTGGIDQQKMYDYISQQLVPQFQHIQ 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P R+  L    A +                         
Sbjct: 175 GVGGVWGPYGGSSKAVRVWLNPERMMALNIKAADVVGTLSS------------------- 215

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV- 296
                      +              +    V D+                N+       
Sbjct: 216 -YNATFTAGTIMGEARDFSINPVNQVENIDDVKDLVIRVDNGNVIRVNDVANVEMGEESL 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 ++            +  +     E        ++          +         
Sbjct: 275 TPSLLSVSGKPAMSLQILPLSSENPVTVAENVKTEINRMQQHLPDGMEMTMVYNQADFIK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV +V+ + +   +   V   +I + VI   A+++ LG ++ + +
Sbjct: 335 AAIDEGFSTLVEAIILVSLVVVLFMGSFRVASVPIITIPVCVIGVFAVMAGLGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           I  I+L IGL VD  I+V E         ++ F +   G       +    +T  +  + 
Sbjct: 395 ILAIILAIGLVVDDAIVVVENCYRHVENGETPFNAALKGSREIIFPVIAMTLTLAVVYLP 454

Query: 477 LFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFII-----RYKKMKSIDINPL 528
           +    G      R FA T+  +++IS   A+++   M  ++I     + K   +ID    
Sbjct: 455 IGLMSGLTADLFRQFAFTLAAAVIISGIVALTLSPMMSAYLIKPVVKQPKWFTAIDGVIH 514

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +   F R R       +L  +  + L     +    +  G I +  +A   
Sbjct: 515 KITNRYIQELRKWFERKRIMSAIALMLVLLSGVALWTMPRVLLPTEDTGFIDVTSVAPTG 574

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGE 614
           V       +   L             
Sbjct: 575 VGRQYHLDHNAELNSVMNGNDAIGAN 600



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 96/286 (33%), Gaps = 10/286 (3%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
               +        + +N   +      L +  +    + V       +    ++      
Sbjct: 222 AGTIMGEARDFSINPVNQVENIDDVKDLVIRVDNGNVIRVNDVANVEMGEESLTPSLLSV 281

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKK---ITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                + LQ  P  S     V E VK +   + + +P               +  I +G 
Sbjct: 282 SGKPAMSLQILPLSSENPVTVAENVKTEINRMQQHLPDGMEMTMVYNQADFIKAAIDEGF 341

Query: 671 VGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             ++ + I + L+ +     +  A   I T+ + +       A  G   N+  + A++  
Sbjct: 342 STLVEAIILVSLVVVLFMGSFRVASVPIITIPVCVIGVFAVMAGLGFSINVLTILAIILA 401

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV +      +      +  +   K   E +   +  ++   +  LP+ + 
Sbjct: 402 IGLVVDDAIVVVENC---YRHVENGETPFNAALKGSREIIFPVIAMTLTLAVVYLPIGLM 458

Query: 790 GG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G    +   FA  +A  ++++   ++ ++  +  ++     K  +
Sbjct: 459 SGLTADLFRQFAFTLAAAVIISGIVALTLSPMMSAYLIKPVVKQPK 504



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 10/289 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       FT+ +   ++ K      VL    V     ++   S  +     
Sbjct: 730  TFLGSVKAADLQADDGFTYPIQVQVNRKALGDFQVLDKLYVTSESGQTLPLSQFVSIKQA 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  K F+ +   +    +        +K  I + +P     +       I ++L   
Sbjct: 790  TAESNFKTFMGQDNAEITADLIPGYTASDIKTYIDQQLPALLSDSQGYQYNGIVKDLTDS 849

Query: 669  --GIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              G   + +++ + + + +  +F+ +   L  + T+ L I   L    +FG   N+ +  
Sbjct: 850  QAGTQALFLLAIVFIYLILAAQFESFVDPLIILLTVPLCIVGALLTLRVFGQSLNIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +      K  +  +S  + I  S    L   + TS+   +  L
Sbjct: 910  GLLTLVGLVTKHGILLVEFAN---KQRSNGLSAIEAILSSAQSRLRPILMTSLTMILGSL 966

Query: 785  PMAV-WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+A+  G   +   +  + +  G++     S+F+     + +   + K+
Sbjct: 967  PLALASGPGSLGRINIGLVLVGGLLAGTFFSLFVVPVAYVGMAKLKQKD 1015


>gi|152981031|ref|YP_001354022.1| drug efflux pump transmembrane protein [Janthinobacterium sp.
           Marseille]
 gi|151281108|gb|ABR89518.1| drug efflux pump transmembrane protein [Janthinobacterium sp.
           Marseille]
          Length = 1029

 Score =  135 bits (339), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 71/627 (11%), Positives = 167/627 (26%), Gaps = 48/627 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   +  +G          +  +   PS         G          L   
Sbjct: 9   RRPVMTVLLSIAVVVLGAF-----CYFKLPIAALPSYDTPVINVTG---------SLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S +        S       ITL F  +R  +  A  V   L  
Sbjct: 55  SPEVMAASVATTLEKQFSTIAGLSTISSSSTLGNTSITLEFDQNRDIDAAAVDVQAALLR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L ++              + +L    +        E +          +       
Sbjct: 115 AQRSLPIEMTALPAYRKVNPADAAILLLA-LTSPSLSLSELNDYAENLISPSLSTINGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  +  P  L     T  +++      N +          + D      
Sbjct: 174 QVQVYGQRRFAVRVKVKPDELAARNMTLDEVALALRAANANSPVG------VLDGTRQTL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   ++                 +   ++       +         +   +     G 
Sbjct: 228 TLQANKQLRNA--------------EAFSNLVISSRNGQTTRLNDVAVVEDSVESTKSGS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +   +    ++         +          V      +   +   
Sbjct: 274 WVNGEPSIVLAVQRQPNANTVAVVDAVKQTLPQFKDQMPASINVQVLNDRSVSIREAIHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV++V+F+ +      L+   S+ +++I   AL+  LG +L   S+ GI 
Sbjct: 334 VKLTLLLTIALVVLVIFLFLKRLSATLIPVLSLPISLIGCFALMYWLGYSLDNISLLGIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +GL VD  I++ E I            +   G      TI   +I+ +   + +FF  
Sbjct: 394 IAVGLVVDDAIVMLENIVRHIEDGMEPLAAALKGSREVSFTIISISISLVAVFIPIFFMP 453

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPL 528
           G        FA  + L++++S   ++++V  +                    +S +    
Sbjct: 454 GVIGLLFYEFAAVVSLAVMVSAVMSLTLVPMLCSRFLKHESPAEHEKENWLSRSFEKLFN 513

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +       +   +     F + +I  +      +  +  G I + +     
Sbjct: 514 RVLHGYTRGLDWSLSHRKSILLLAVGTFLLTAILFITIPKGFFPTEDIGQISVTIEGPED 573

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEK 615
                +   + +      +  N     
Sbjct: 574 ASYPTMVKLVSAAAEIVQNDPNVATTT 600



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 85/244 (34%), Gaps = 10/244 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+++R    + +          + +           + L  Q   +     V++ VK+ +
Sbjct: 245 VISSRNGQTTRLNDVAVVEDSVESTKSGSWVNGEPSIVLAVQRQPNANTVAVVDAVKQTL 304

Query: 643 TEIVPLSTIQNTEIVGPKISRELIR---KGIVGVIISAIAMLIYIWIRFKWYFA-LGAIT 698
            +            V    S  +        + ++++   +++ I++  K   A L  + 
Sbjct: 305 PQFKDQMPASINVQVLNDRSVSIREAIHDVKLTLLLTIALVVLVIFLFLKRLSATLIPVL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L + +          G   +  ++  +   +G  V+D +V+ + +   ++     +   
Sbjct: 365 SLPISLIGCFALMYWLGYSLDNISLLGITIAVGLVVDDAIVMLENI---VRHIEDGMEPL 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
               K   E     +  S++     +P+    G +      FA  ++  ++V+A  S+ +
Sbjct: 422 AAALKGSREVSFTIISISISLVAVFIPIFFMPGVIGLLFYEFAAVVSLAVMVSAVMSLTL 481

Query: 816 AAPI 819
              +
Sbjct: 482 VPML 485



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++++ + + I + + ++ +   +  +  L       L    +FG E  + A   +L L+G
Sbjct: 857  LLLAIVVIYILLGVLYESYIHPITILAGLPSAAVGALLTLRIFGFELTMIATIGILLLVG 916

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ D   +        ++  + I  +        + T+MAA +  LP+A+   
Sbjct: 917  LVKKNAIMMIDFALE--AQRNQGMTPAEAIRSACILRFRPIMMTTMAAAVGALPIALGLG 974

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             G  +     + +  G++V+   ++FI   I LF   + 
Sbjct: 975  AGAELRQPLGLAVVGGLMVSQVITLFITPVIYLFFDRFS 1013


>gi|118594062|ref|ZP_01551409.1| Acriflavin resistance protein [Methylophilales bacterium HTCC2181]
 gi|118439840|gb|EAV46467.1| Acriflavin resistance protein [Methylophilales bacterium HTCC2181]
          Length = 1010

 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 48/518 (9%), Positives = 143/518 (27%), Gaps = 42/518 (8%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           ++  +    G++      L +  +  FP                     LE    + ++ 
Sbjct: 1   MISGVFILFGIISIQKIGLDRFPMIEFPVLS--------------VTTTLEGANPEIIDA 46

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    +   +          S     + +T++F   +  E   +++   +  V  +L  
Sbjct: 47  SITNIIETAVNSTTGIESIKSSSSPGVSVVTITFNLDKDIEVAFNEIQSKVGQVARRLPD 106

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
           D    ++         I+    + D       + ++        Q+   +   +     R
Sbjct: 107 DIVPPVVRKVETNASPIMWLGFSGD---RTIQDLNLYATNILKKQLETIDGVGEVRIGGR 163

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
               +       ++  L  +   +       +    G                       
Sbjct: 164 RDRTVRVNLIVEKMSALNISAIDVVNAFNREHIQLPGGYL-------------------- 203

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +          + +    + + D+                 +   L    +     +   
Sbjct: 204 VKDQSEKMFKLDLEYHQIEKLNDLLVAYRSDGPVKIKDIAEVQDGLEDYRETARFNSLPS 263

Query: 309 NQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                   A  +    I      L + +R          +   +           +    
Sbjct: 264 VGLGIVKVANSNTVEIINKIKLKLDSDIRPNLPLGVTLEISTDDSVFIKAMVKSLQSHIV 323

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               L   ++ + ++  +   +   +I ++++  +A++   G T    ++  ++L IG+ 
Sbjct: 324 EGTILAAFIVLLFLMSLRSTFIIAVAIPISLLGAIAVMYFFGFTFNSMTLLALILLIGVV 383

Query: 428 VDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GG 483
           VD  I+V E I   +   + + F +   G       +  S +  +     + +     G 
Sbjct: 384 VDDAIVVLENIFRHHHEYDVNPFDASINGSKEVVFAVLTSTMALVCIFAPVIYMDGIIGR 443

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
               FA+ +   +LIS+  ++++   +    +  +   
Sbjct: 444 FFESFAVVVTSGVLISLIVSLTLTPMLCSKFLIKENFN 481



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 94/263 (35%), Gaps = 9/263 (3%)

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           +       + I+    + +   ++ PV +  +    + L+    + +        L  ++
Sbjct: 211 MFKLDLEYHQIEKLNDLLVAYRSDGPVKIKDIAEVQDGLEDYRETARFNSLPSVGLGIVK 270

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAM 680
               ++V     +++             +         +  + + K +   I+  + +A 
Sbjct: 271 VANSNTVEIINKIKLKLDSDIRPNLPLGVTLEISTDDSVFIKAMVKSLQSHIVEGTILAA 330

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            I +               + + +   +     FG  FN   + A++ LIG  V+D +VV
Sbjct: 331 FIVLLFLMSLRSTFIIAVAIPISLLGAIAVMYFFGFTFNSMTLLALILLIGVVVDDAIVV 390

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GS 796
            + + ++   Y  +  F   I+ S        V TS  A + +    ++   +I     S
Sbjct: 391 LENIFRHHHEYDVN-PFDASINGSKEVVFA--VLTSTMALVCIFAPVIYMDGIIGRFFES 447

Query: 797 FAIPMAFGIVVAASSSIFIAAPI 819
           FA+ +  G++++   S+ +   +
Sbjct: 448 FAVVVTSGVLISLIVSLTLTPML 470



 Score = 44.3 bits (102), Expect = 0.090,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 56/163 (34%), Gaps = 9/163 (5%)

Query: 674  IISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +     +L+Y+ +      ++  +  +    L +   +    L G   N+ ++  ++ LI
Sbjct: 850  VFILATVLLYMVLASLFNSFFQPIIVMLAQPLAVVGGIALLWLTGKSLNIYSMIGMVLLI 909

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMA 787
            G    + +++ D      +L          + ++    L   + TS   + A +      
Sbjct: 910  GLVAKNSILLID---LTNQLRDKGKETNKALLEACPVRLRPVLMTSLTLILALLPAALGF 966

Query: 788  VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              G    G  AI +  G++ +   ++ +          +  K 
Sbjct: 967  GAGSEENGPLAIAVIGGMISSTLLTLIVIPAAYSLSARFIDKK 1009


>gi|330958096|gb|EGH58356.1| putative cation/multidrug efflux pump [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 376

 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 36/394 (9%), Positives = 97/394 (24%), Gaps = 28/394 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +   L ++I   G++        +  +  +P  +P   +          +       
Sbjct: 10  RPVFAGALSTLILLAGIVSLF-----RLPVSEYPDVVPPLIV---------VNAQYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    +E  + ++             N  ++++F      +     V   +  
Sbjct: 56  PAVVAQTVAAPLEEQINGVEDMLYMQSQANSDGNLTLSVTFKVGTDPDKAQQLVQNRVSQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D ++  +VT        +           +A       I    +Q+       
Sbjct: 116 ALPRLPEDVRRLGVVTMKSSSTQTLAVHLVSPDDQYNATYLRNYGILNIKNQLERIPGVG 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP ++ Q   + + +       N      + G + +R S   Q 
Sbjct: 176 EVRIWGGGDYAMRIWLDPEKVAQRGLSASDVVAAIREQNVQVAAGVIGGQPMRTSVAQQL 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  +  +                 +    I          F      +    +      
Sbjct: 236 SVNTQGRLKSEQ-------------EFGDIILKSSDAGAVTFLRDVARVELAASDYGLRS 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++             A  +     + A  +    R          +          S   
Sbjct: 283 LVDGKPAVGFGIFQMAGGNALAISDQARAIMQQARQDMPGGVDYTIVFDPTRFVRSSIVA 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
              T      LV++V+ + +   +  ++   ++ 
Sbjct: 343 VIHTLLESTLLVVLVVILFLQTWRASIIPLLAMP 376


>gi|323345378|ref|ZP_08085601.1| AcrB/AcrD family multidrug resistance protein [Prevotella oralis
           ATCC 33269]
 gi|323093492|gb|EFZ36070.1| AcrB/AcrD family multidrug resistance protein [Prevotella oralis
           ATCC 33269]
          Length = 1034

 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 72/567 (12%), Positives = 156/567 (27%), Gaps = 41/567 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF-LQMYSDELRSFLKK-EGI 86
              ++++P   P               + +            ++     L + +   E +
Sbjct: 30  SLPIEQYPDIAPPT-------------VKVSATYTGASAETVMKSVVVPLEASINGVENM 76

Query: 87  GVFSMRQIQN---KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
              +     N    I++ F            V   +     +L  +  K+ +     +  
Sbjct: 77  QYMTSTAANNGTCTISIYFKQGSDPNMAVVNVQNRVASAQGQLPSEITKSGITVRKTQNS 136

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
           ++             A   +  +      Q+       +          L    DP++++
Sbjct: 137 NLKFITMYSPDGRYDAKFLNNYLKINVEPQLSRIPGVGEVNIFGA-DYALRVWLDPNKMK 195

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
                 A +       N        G                                  
Sbjct: 196 AYGLVPADIDNVLSAQNLESPTGSLGAESENTYQYVLKYRGR----------------YS 239

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
           K       +                 I                +   A  +  A  +   
Sbjct: 240 KISDYENLVVKATPDGNVLRLRDVARIELGTVNYNLKSTTKGLLGASASITQIAGSNAYN 299

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
            I+    + A +R    P  +   +         S      T  I   LV+IV+F+ +  
Sbjct: 300 IIQQIDQVEAQVRKTLPPGMILEDQTSVTDFLNASIQNVVETLLIALVLVVIVVFLFLRD 359

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIR---- 439
            +  +V   +I +++I T A + ++G TL L ++  +VL IG  VD +I+V E ++    
Sbjct: 360 WRSMVVPTIAILVSLIGTFAFIYVVGFTLNLLTLFALVLVIGTVVDDSIVVVEAVQAKLD 419

Query: 440 -EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
            E          +       A  T     +   +         G   + F +TM  ++ I
Sbjct: 420 EEGYTSVYEATIAAMKELKSALMTTTIVFMAVFVPVSFTSGTTGVFYKEFGLTMAAAVAI 479

Query: 499 SMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           S+  A+++  A+    +   +K  S         ++      I  M  R   V +SI  +
Sbjct: 480 SLLNALTLCPALCAIILRPKRKKISAKKAKKRNKWMERYERGIVNMLRRRRLVALSIPAA 539

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +  +  +        +  +    + V 
Sbjct: 540 VLLLAFMIYTTKTGLVPQEDMGTIDVN 566



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 57/136 (41%), Gaps = 6/136 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +     +++ +  T  F  + G   NL  + A++ +IG  V+D +VV + ++  
Sbjct: 358 RDWRSMVVPTIAILVSLIGTFAFIYVVGFTLNLLTLFALVLVIGTVVDDSIVVVEAVQAK 417

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAF 803
           +     + S  +    ++ E L  ++ T+   F++V     +           F + MA 
Sbjct: 418 LDEEGYT-SVYEATIAAMKE-LKSALMTTTIVFMAVFVPVSFTSGTTGVFYKEFGLTMAA 475

Query: 804 GIVVAASSSIFIAAPI 819
            + ++  +++ +   +
Sbjct: 476 AVAISLLNALTLCPAL 491



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 8/146 (5%)

Query: 670  IVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  VI+    + IYI +         +   I  +   +  +     +FGIE N+     +
Sbjct: 862  VTTVILLLSLVFIYIILSSLYESLLISFAVILVIPFGLCGSFLLSGIFGIENNIYMQTGL 921

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG      +++ +   +  +     +S       +        V T+      +LP+
Sbjct: 922  IMLIGMLAKTAILLTEYATE--RRRKDGMSIAMSAFSAARVRFRPIVMTAAVMIFGMLPL 979

Query: 787  AVWGGSVIGS---FAIPMAFGIVVAA 809
                G+           +  G++V  
Sbjct: 980  MFSSGAGAKGDASIGTGVLGGMLVGT 1005


>gi|319782942|ref|YP_004142418.1| acriflavin resistance protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168830|gb|ADV12368.1| acriflavin resistance protein [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 1053

 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/597 (11%), Positives = 166/597 (27%), Gaps = 41/597 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++   +   GL            +   PSA                   L   
Sbjct: 8   RRPVATLLMSFALVLGGLFA-----YKFLPVAALPSAEFPVV---------NVSASLPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +     +  + +        +    Q  I + F  +R  +  A  V   +  
Sbjct: 54  SPETMATSVATPLIKQFATIAGIDSISTTNSLGQTSIAIQFVLNRDIDAAAADVQAAIAR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L                 + +L  + +   +    +            +   +   
Sbjct: 114 TQKSLPPQMTAPPSYRKVNPADAPILLMSLVSDTVP-LTDLDAFAENVISPSLSTIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  + DP+ L     +  ++       N++    +        +D  Q 
Sbjct: 173 QVSIFGQQKYAVRIQIDPTALAARGISIDQLQAAVASANSNTPLGVLQ------NDKQQL 226

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +++                    +I                 +   +       
Sbjct: 227 TITANTQLT--------------DAAGFSNIIIATKNGHPVRLGEVTRVVDSVQTTTTAS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++    +    +          +      +   + S 
Sbjct: 273 WYDGTRAIIMAVQRQPDANTVDVVDKVKAMLPSFKDQMPAAADIKLLNDRSSSIRQAVSD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ +++I TL  + L G ++   S+ G+ 
Sbjct: 333 VQFTLLLTIALVIMVIFVFLRRVTATIIPAVAVPISLIATLGAMFLFGFSIDNISLMGLT 392

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L +GL VD  I++ E I         S F +   G      TI   +I+ +   + +   
Sbjct: 393 LAVGLVVDDAIVMLENIFRHMEEDGLSAFDASLKGAREIGFTIISISISLVAVFIPVLLM 452

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
           GG   R    FA+ + ++IL SMF ++++   +   +  +                    
Sbjct: 453 GGVIGRIFNEFAVVVTVAILASMFVSLTLTPMLCSRLLSVTKADRDKHGPGHKQDLVTRG 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               + F     + V +  + +  +   L           +   Q+ V      D+S
Sbjct: 513 YDRVLSFCLRHTFLVFLVFVGTAAASVWLIQTSPKGFFPQEDIGQISVTTIARQDIS 569



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 81/214 (37%), Gaps = 11/214 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-----K 668
           +    + +  Q         V++ VK  +              +    S  + +     +
Sbjct: 275 DGTRAIIMAVQRQPDANTVDVVDKVKAMLPSFKDQMPAAADIKLLNDRSSSIRQAVSDVQ 334

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             + + I+ + M+I++++R +    +     + + +  TLG   LFG   +  ++  +  
Sbjct: 335 FTLLLTIALVIMVIFVFLR-RVTATIIPAVAVPISLIATLGAMFLFGFSIDNISLMGLTL 393

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  V+D +V+ + +     +    +S  D   K   E     +  S++     +P+ +
Sbjct: 394 AVGLVVDDAIVMLENIF--RHMEEDGLSAFDASLKGAREIGFTIISISISLVAVFIPVLL 451

Query: 789 WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
            GG +      FA+ +   I+ +   S+ +   +
Sbjct: 452 MGGVIGRIFNEFAVVVTVAILASMFVSLTLTPML 485



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 74/172 (43%), Gaps = 8/172 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF 718
                 L  +G + V  + + + I + I ++ +   L  +T L   +   +      G++ 
Sbjct: 844  TFQDSLANQGFL-VGGAILTIYIVLGILYESFIHPLTILTGLPSAVLGAVVALRFAGMDL 902

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++ AV  +L LIG    + +++ D   +  +     +S  + I K+        + T++A
Sbjct: 903  SVIAVIGILMLIGIVKKNGIMMVDVALELRRE---GMSATESIHKACLMRFRPIMMTTLA 959

Query: 779  AFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            A +   P+A+       +     + +  G++ + + ++F+   I +++ ++ 
Sbjct: 960  ALMGTFPIALGTGASAELRQPLGVAVVGGLLASQALTLFVTPVIYVYMENFS 1011


>gi|149178781|ref|ZP_01857363.1| transporter, AcrB/AcrD/AcrF family protein [Planctomyces maris DSM
           8797]
 gi|148842398|gb|EDL56779.1| transporter, AcrB/AcrD/AcrF family protein [Planctomyces maris DSM
           8797]
          Length = 1020

 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 62/526 (11%), Positives = 155/526 (29%), Gaps = 43/526 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                 ++  ++  +G        +    + ++P                   +V     
Sbjct: 10  RPVLATVIGLVVLLLGA-----EAMTSLTVRQYPETTSTT-----------IRIVTPYIG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V GF+    ++  +  +       S     + IT              ++   +Q
Sbjct: 54  ANAELVQGFITTPLEQTIATAEGIEYLESSSTLGASTITARLELEYDPNAAVAEILTKIQ 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V ++L    + +++  +   + + +      D +   A E +  + R    ++      
Sbjct: 114 QVRNRLPEGSEDSIVTISRGSDQAAMYLAFFSDVLK--ASEITDYLTRAVRPRLETVPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q        I +    DP ++  L  + +++       N            +       
Sbjct: 172 QQAQLIGAQTIAMRLWLDPGKMASLKVSPSEVRRSIAESNFLSAIGETKGSLIS------ 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                             A+ + ++ +   ++   E G           +          
Sbjct: 226 --------------IPLKADTNLRSVEAFENLVIREEGDTIIRVRDLAQVELGAESYDSS 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +         + +   TI     L   ++         IV   +  A   S  
Sbjct: 272 VIFEGKNVAFIGVQVAPEANLLDTIAGVRQLIPQVKKQLPGGLEGIVVYDSTEAVEASID 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +      +V +V+++ +   +  LV   ++ L +I    L+ +LG ++ L ++  +
Sbjct: 332 EVIRSLIEALLIVTVVIYLFLGALRSALVPGIAMPLAIIGAFFLMQMLGYSVNLLTLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L IG  VD  I++ E          +   +          +I   N+  +     +   
Sbjct: 392 ILAIGTVVDDGIVMVENATRHIEGGATPEGAAKKTVRELTGSIIAMNLVVVAVFAPVGLM 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           G   G     FA T+  + LIS   A+++   M   +++    K  
Sbjct: 452 GGLTGSLFTEFAYTVAGATLISGILALTVSPMMCAQLLKTGMQKRW 497



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/184 (11%), Positives = 72/184 (39%), Gaps = 9/184 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFF 711
                 +  + +     + V  +   +++Y+ +      +        ++ + +   + FF
Sbjct: 837  TDWKGQSRQFVSENTSLLVAFALAILMMYLTLAAQYESFRDPAIMFVSIPMSLAGAMLFF 896

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            AL     N+     +L LIG  +   +++ +   +  +     +  R  I+K+ +  L  
Sbjct: 897  ALGITSINIYTQIGLLALIGSIIRHGILLVEFANEIQREE--GLDRRQAIEKAASLRLRS 954

Query: 772  SVYTSMAAFISVLPMAVWGGSV----IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + T++A  + +LP+ +  G        + +  +  G+ +    ++++   +   I    
Sbjct: 955  ILMTTIATLVGLLPLLIVSGGPGAASRFAISFTLGVGMAIGTIFTLYMVPALYTVIATKH 1014

Query: 828  AKNA 831
            ++++
Sbjct: 1015 SRSS 1018



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/242 (12%), Positives = 82/242 (33%), Gaps = 7/242 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    +  + +  +       +  D S         F+        + +     +  + 
Sbjct: 244 VIREEGDTIIRVRDLAQVELGAESYDSSVIFEGKNVAFIGVQVAPEANLLDTIAGVRQLI 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            ++ + +P            +     I + I  +I + + + + I++       AL    
Sbjct: 304 PQVKKQLPGGLEGIVVYDSTEAVEASIDEVIRSLIEALLIVTVVIYLFLGALRSALVPGI 363

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + L I        + G   NL  + A++  IG  V+D +V+ +      +      +  
Sbjct: 364 AMPLAIIGAFFLMQMLGYSVNLLTLLALILAIGTVVDDGIVMVENA---TRHIEGGATPE 420

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
               K++ E  G  +  ++       P+ + G   GS+   FA  +A   +++   ++ +
Sbjct: 421 GAAKKTVRELTGSIIAMNLVVVAVFAPVGLMGGLTGSLFTEFAYTVAGATLISGILALTV 480

Query: 816 AA 817
           + 
Sbjct: 481 SP 482


>gi|310644357|ref|YP_003949116.1| efflux system [Paenibacillus polymyxa SC2]
 gi|309249308|gb|ADO58875.1| Putative efflux system [Paenibacillus polymyxa SC2]
          Length = 1032

 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/665 (10%), Positives = 180/665 (27%), Gaps = 41/665 (6%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L   +   G + AL   +      + P A     I                     V  
Sbjct: 1   MLIVALLIGGGIFALRLPVEYMPDMKLPYAAVVTSIPN--------------ATPTEVEE 46

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    ++  + ++          +  + + + F            +   +  +   L  
Sbjct: 47  LVTKPIEKSLASIENVDTITSESSEGSSMVMIQFNWGVDMNQATLDMRDKVDTIRGSLPD 106

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                 ++        ++      DQ I+     + +II     ++           S  
Sbjct: 107 AANSPRVLKVDLNATPVITLAFTGDQDINKLKPIAEDIIE---PRLERIAGVAAANMSGG 163

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
               +    D ++L+    T  ++       N +           +     Q   +   E
Sbjct: 164 QERLVKITVDQAKLQSYGITLDQIRQALSANNVAGSAGSVYRGNTQIQLRVQGEYKAVSE 223

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +    +                      +G           +   +  V           
Sbjct: 224 MGETPI---------------------PVGKGSVKLKDIATVEDSVEEVTTISTFNGKPS 262

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                +     +      +       +R    P     +          S         +
Sbjct: 263 INISVTKATGGNTLSIANSVKESLESIRKDLPPGTQLEMVTDASKPISDSVHSLIEHAIL 322

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              +  IVL + +   +  ++A   I ++ + T  ++   G T+ + S++G++LG+G  V
Sbjct: 323 GLIIAAIVLLLFLNSIRSTIIAAIVIPISFVATFMMMYFTGQTINIISLSGLLLGLGSFV 382

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAV 485
           D  +++ E I  +  + +S+      G  +  + +  S +  ++  + + F     G   
Sbjct: 383 DFAVVIIENIFRQRHEGKSMLQGAIDGSKQVGNAVMASALAQIVVFLPVVFVDGIAGVMF 442

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           +  A+T+  S + ++  ++ IV  +    +     +SI  +   +         I F + 
Sbjct: 443 KPLALTVIFSHIAALLVSLMIVPMLGSRWLPTVPDESIYSSGTYKGINPIVWFNIGFEKF 502

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           +     +          +L    L +         +        D       ++      
Sbjct: 503 KGGYRRVLKWGINHRKSVLIITVLMFVAAGALISMVKAEFIPESDTGEFSVTVKLPNGTV 562

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
           +       +      L+    D +  T     +          S   +  +     + ++
Sbjct: 563 LEETERVVQGIEKEILKVPDLDKMTVTVGSGGLSGYSGAAPSNSAQLSVTLKDGHQATDV 622

Query: 666 IRKGI 670
           I +G+
Sbjct: 623 IVEGL 627



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 91/254 (35%), Gaps = 8/254 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       + V  S++ S+    +       ++   V++      S     V + +   +
Sbjct: 758  LRITTSQGIDVPLSSVASIDKRAVPDSVTREDQTRQVQISADIDGSGDILSVNQKIDALL 817

Query: 643  TEIVPLSTIQNTEIVGPKISRE-LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
                           G             + +++S + + + +  +F+        + ++
Sbjct: 818  KSTHFPEGYSADTGGGQNEQMMESFINLAIAILLSVVLIYMVMAGQFESLLTPFVIMFSI 877

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               +   L    + G   ++ A    + L+G  VN+ +V+ D +   ++L        + 
Sbjct: 878  PPTLIGVLIGLVVTGASLSVPAFTGYIMLVGLVVNNAIVMIDYI---IQLRKEGEDRDEA 934

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I    +E L   + T++A  ++++PMA     G       A+ + FG+  AA  ++ +  
Sbjct: 935  IIHGASERLRPILMTTLATVLALIPMAFAKGDGNETQAPMAVVVVFGLSFAALVTLILIP 994

Query: 818  PILLFIYDWRAKNA 831
             + + + +   K  
Sbjct: 995  VVYVILDNIIQKRK 1008



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 79/241 (32%), Gaps = 11/241 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V       +      + ++   +                     +S      LE ++K 
Sbjct: 235 SVKLKDIATVEDSVEEVTTISTFNGKPSINISVTKATGGNTLSIANS--VKESLESIRKD 292

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +     L  + +           LI   I+G+II+AI +L+++         + A   + 
Sbjct: 293 LPPGTQLEMVTDASKPISDSVHSLIEHAILGLIIAAIVLLLFLN---SIRSTIIAAIVIP 349

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           +    T       G   N+ +++ +L  +G  V+  VV+ + +    +      S     
Sbjct: 350 ISFVATFMMMYFTGQTINIISLSGLLLGLGSFVDFAVVIIENI---FRQRHEGKSMLQGA 406

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                +     + +++A  +  LP+       G +    A+ + F  + A   S+ I   
Sbjct: 407 IDGSKQVGNAVMASALAQIVVFLPVVFVDGIAGVMFKPLALTVIFSHIAALLVSLMIVPM 466

Query: 819 I 819
           +
Sbjct: 467 L 467


>gi|119776401|ref|YP_929141.1| putative multidrug resistance protein [Shewanella amazonensis SB2B]
 gi|119768901|gb|ABM01472.1| putative multidrug resistance protein [Shewanella amazonensis SB2B]
          Length = 1023

 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/560 (12%), Positives = 168/560 (30%), Gaps = 30/560 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + + GF+    ++  +               ++ I +    +         +   +  V
Sbjct: 56  ANLIQGFITQPLEQALAQADNVDFMTSESFLGKSNINVYMKLNTDPNGALADILAKVNSV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L  + +   +  +T  + S++    + D + S   + +  + R    Q+       +
Sbjct: 116 RSQLPKESEDPTVTMSTGSQTSVLYIAFSSDSINSS--QLTDYLERVVKPQLFTINGVAK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 I   +    DP+R+     +  ++       N           +   +      
Sbjct: 174 VNLYGGIQYSMRIWLDPARMGAFNLSATEVMQVLQANNFQSAVGQANGVYTLFNGTADTQ 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V    E+                      +       +         +    +  +   +
Sbjct: 234 VATIDELK--------------------RLVIKSGDGKVVRLGDIAEVSLDKSHDVYRAL 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +       A  L   +     P     +   +  A   S +  
Sbjct: 274 ADGQEAVVIGLDVTPTANPLTVAADARTLLPEIERSLPPSIKARILYDSSRAIDESINEV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    A +V++V+ + +   +  L+   +I L++I    ++   G +L L ++  +VL
Sbjct: 334 IKTIGEAAIIVIVVITLFLGSLRAVLIPIVTIPLSLIGVAIIMQTFGFSLNLMTLLAMVL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E +    +  +S F +  +G       +    IT       +   G 
Sbjct: 394 AIGLVVDDAIVVVENVDRHIKLGESPFRAAIIGTREIAVPVISMTITLAAVYAPIALMGG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLI 534
             G   + FA+T+  ++ IS   A+++   M   I        K   +++          
Sbjct: 454 ITGSLFKEFALTLAGAVFISGIVALTLSPMMCSKILKEHSAPSKFEHAVESTLSRMTDSY 513

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A    +         I+F+   +   F        + KG + +   A    +L  +
Sbjct: 514 SRMLAAVMQKRAVVVAFAIIVFASLPLLFKFIPAELAPKEDKGVVMMMGTAPSTANLDYI 573

Query: 595 RSNLESLQIGDISFQNFDGE 614
           ++N+  +     +       
Sbjct: 574 QANMTLVTNMIAAQPESAAS 593



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 75/235 (31%), Gaps = 7/235 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V L  +                   E   +        + +        +  +I   +
Sbjct: 251 KVVRLGDIAEVSLDKSHDVYRALADGQEAVVIGLDVTPTANPLTVAADARTLLPEIERSL 310

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
           P S          +   E I + I  +   + I +++           L  I T+ L + 
Sbjct: 311 PPSIKARILYDSSRAIDESINEVIKTIGEAAIIVIVVITLFLGSLRAVLIPIVTIPLSLI 370

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                   FG   NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 371 GVAIIMQTFGFSLNLMTLLAMVLAIGLVVDDAIVVVENV---DRHIKLGESPFRAAIIGT 427

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            E     +  ++       P+A+ G   GS+   FA+ +A  + ++   ++ ++ 
Sbjct: 428 REIAVPVISMTITLAAVYAPIALMGGITGSLFKEFALTLAGAVFISGIVALTLSP 482



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 66/164 (40%), Gaps = 10/164 (6%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDI---TKTLGFFALFGIE-FNLTAVAAVLT 728
            +++   + + +  +F+     +  + ++ L I      LG+  +FG+   N+     ++T
Sbjct: 853  LLAIAIIFLVLASQFESLKDPVVILVSVPLAICGALIALGWTHVFGLSSMNIYTQVGLIT 912

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-A 787
            L+G      +++ +  ++        IS  + I  +    L   + T+ A    ++P+  
Sbjct: 913  LVGLITKHGILMCEVAKEE--QLHRGISRIEAISLAAKIRLRPILMTTAAMIAGLIPLLF 970

Query: 788  VWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAK 829
              G   +  F I +    G+ +    ++F+   I  F+ +    
Sbjct: 971  ASGAGAVARFNIGLVIVAGLAIGTVFTLFVLPVIYSFLGEKHKP 1014


>gi|262163711|ref|ZP_06031451.1| RND multidrug efflux transporter [Vibrio mimicus VM223]
 gi|262027691|gb|EEY46356.1| RND multidrug efflux transporter [Vibrio mimicus VM223]
          Length = 970

 Score =  135 bits (338), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 60/468 (12%), Positives = 145/468 (30%), Gaps = 25/468 (5%)

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
           ++  +               ++ IT++   +         V      V S+L  + +   
Sbjct: 2   EQAVAQADNIDYMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNSVRSQLPKEAEDPT 61

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
           +  +T    +++      + + S   + +  + R    Q+              +   L 
Sbjct: 62  VTMSTGSTTAVLYIGFTSEDLASS--QITDYLERVVNPQLYAVNGVSSIDLYGGMKYALR 119

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
              DP+++  L  + + +       N           F+  +      V    E+  + +
Sbjct: 120 VWLDPAKMAALNMSASDVMSVLNANNYQSATGQAIGEFVLYNGSADTQVSTVEELENLVV 179

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPS 314
                N         V ++      R         +                    A  +
Sbjct: 180 KAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVV--------------------AAIN 219

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
                +     +    +   L+          V   +  A   S      T    A +VL
Sbjct: 220 AAPSANPINIAKDVLDMLPELQKNMPSNIKMNVLYDSTVAINESIHEVIKTIIEAALIVL 279

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +VL IGL VD  I+V
Sbjct: 280 VVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVV 339

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAIT 491
            E +    ++ +S F +  +G       +    +T       +   GG      + FA+T
Sbjct: 340 LENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGALFKEFALT 399

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
           +  S+ +S   A+++   M   +++  +  +     +           
Sbjct: 400 LAGSVFVSGIIALTLSPMMCSKMLKANETPNKFELKVHHLLDRMTARY 447



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 79/791 (9%), Positives = 210/791 (26%), Gaps = 36/791 (4%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
                    +EL + +        ++ ++ +   ++ A S      +      +    + 
Sbjct: 163 SADTQVSTVEELENLV--VKAEKGNVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINA 220

Query: 126 LNVDPKKNLLVTTTEKEISI---VLSQNNIDQVISHAIEQSM---EIIRQRIDQIGISES 179
                  N+     +    +   + S   ++ +    +  +    E+I+  I+   I   
Sbjct: 221 APSANPINIAKDVLDMLPELQKNMPSNIKMNVLYDSTVAINESIHEVIKTIIEAALIVLV 280

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            I         + +P    P  L  +      M F       +    +  +  + D    
Sbjct: 281 VITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSW--NLMTLLAMVLAIGLVVDDAIV 338

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                D+    G     A      +   PV+ ++           +     G        
Sbjct: 339 VLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLTLGAVYAPIALMGGITGALFKEFAL 398

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
               +  V      +    +               L+   L  ++    ER + A +   
Sbjct: 399 TLAGSVFVSGIIALTLSPMMCSKMLKANETPNKFELKVHHLLDRMTARYERMLSAVMAHR 458

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL---TLPS 416
            +      IV   + ++   I             + +    + A L  L  T+       
Sbjct: 459 PVVIAFAFIVFASLPMLFKFIPSELAPSEDKGVVMLMGTGPSNANLDYLANTMDDVNQIL 518

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
                +            N+     +    S   +     +    T+        +    
Sbjct: 519 SDQPEVQFAQVFTGVPNSNQAFGIASMVPWSQREASQEEVTNRVGTLVKEIPGMAVTA-- 576

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            F        G  + +   I            A  I          +  +    F     
Sbjct: 577 -FQMPELPGAGSGLPIQFVITTPNSFESLFTIATDILTEVKSSPMFVYSDLDLNFDSATM 635

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLSVVR 595
            I I   +A  +GV +  +    S  +   +     ++ +    +  V     ++   + 
Sbjct: 636 KINIDKDKAGAYGVTMQDIGITLSTMMADGYVNRIDLNGRSYEVIPQVERKWRLNPESMN 695

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI---- 651
           +       G +         + +   +  P  +   +  +  V    T +          
Sbjct: 696 NYYVRAADGKVIPLGSLITIDVVAEPRSLPHFNQLNSATVGAVPSPGTAMGDAINWFENL 755

Query: 652 --------QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLI 701
                    + + +G           +     ++   + + + I+F+     L  + ++ 
Sbjct: 756 ASSKLPKGYSHDYMGEARQYVTEGSALYATFGLALAIIFLVLAIQFESLKDPLVIMVSVP 815

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +   L   A      N+ +   ++TL+G      +++ +  ++        +S  D +
Sbjct: 816 LAVCGALIALAWGTATMNIYSQVGLITLVGLITKHGILICEVAKEE--QLHNKLSRIDAV 873

Query: 762 DKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAP 818
             +    L   + T+ A    ++P+    G      F+I +    G+ +    ++F+   
Sbjct: 874 MHAAKVRLRPILMTTAAMIAGLIPLMYATGAGAAQRFSIGIVIVSGLAIGTLFTLFVLPV 933

Query: 819 ILLFIYDWRAK 829
           I  ++ +    
Sbjct: 934 IYSYLAEKHKP 944



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 84/250 (33%), Gaps = 7/250 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L  +     +             E            + +   + +  +  ++ + +
Sbjct: 185 NVTRLGDIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLDMLPELQKNM 244

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDIT 705
           P +   N          E I + I  +I +A+ +L+ I +        L  I T+ L + 
Sbjct: 245 PSNIKMNVLYDSTVAINESIHEVIKTIIEAALIVLVVITLFLGSLRAVLIPIVTIPLSLI 304

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
                  + G  +NL  + A++  IG  V+D +VV + +    +      S         
Sbjct: 305 GVAMVMQMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGT 361

Query: 766 NETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++       P+A+ G   G++   FA+ +A  + V+   ++ ++  +   
Sbjct: 362 REIAIPVIAMTLTLGAVYAPIALMGGITGALFKEFALTLAGSVFVSGIIALTLSPMMCSK 421

Query: 823 IYDWRAKNAR 832
           +        +
Sbjct: 422 MLKANETPNK 431


>gi|295395563|ref|ZP_06805757.1| AcrB/AcrD/AcrF family transporter [Brevibacterium mcbrellneri ATCC
           49030]
 gi|294971582|gb|EFG47463.1| AcrB/AcrD/AcrF family transporter [Brevibacterium mcbrellneri ATCC
           49030]
          Length = 1121

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/548 (11%), Positives = 161/548 (29%), Gaps = 39/548 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN   + ++  +    G +            + FPS      I                
Sbjct: 9   LRNRSLIALVTVVAIIFGTIATF-----SLKKELFPSFDVPQAI---------VISQYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   + ++       S     ++IT++       +++  ++   + 
Sbjct: 55  AAPEAVEREVTDPLESALAGVQSVDEVSSSSSTGNSQITVTTKYGTSSDDVVRELQRAVS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L       ++  + +    +V+S +          + S ++    + ++   +  
Sbjct: 115 QVESQLPDGVTPTVVAGSVDDFPVLVMSVSG-----DDIEKLSKDLEDIAVPEMKKIDGV 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S +   Q+       R+        +++                           
Sbjct: 170 RDASVSGQTQKQIEIRVKKKRMEDKGVQLDELAQILKTNGVPVSAGELKASNGA------ 223

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             VE    ++ +           +  +P                    +I      +   
Sbjct: 224 APVEVGKRLTSVDDIKNLYVTGEEDGEPE-----------PVKVSDVADIELKDEPITSI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          K   +     E    +   L                      S  
Sbjct: 273 SRSNGKDALTIQVLKKPDSNTVDVAEGVKDVLPELEKKIGNNAEFTTVFDQSPYINQSIE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +     ++V+ + +L  +   +   SI L++++T+  +   G +L + ++A +
Sbjct: 333 DLVREGGLGLIFAVLVILVFLLSFRATAITAISIPLSLLVTMLAIWRTGYSLNMLTLAAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            + IG  VD +I+V E IR       + F ++    S     I  S +T +     L F 
Sbjct: 393 TMSIGRVVDDSIVVIESIRRRQTLGGTKFANIFAAVSEVAGAITSSTLTTVAVFTPLAFI 452

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R FA+T  +++L S+  +++IV  +  + +R ++ +        +       
Sbjct: 453 TGQTGELFRPFALTTSIALLSSLLVSLTIVPVLAYWFLRARESRVKLTRSDKQEIRSLRK 512

Query: 538 IAIQFMRA 545
             ++  + 
Sbjct: 513 ENLKQWKK 520



 Score = 86.7 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 85/255 (33%), Gaps = 9/255 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +      +   VR +  +      +                         +V++ V  K+
Sbjct: 847  MPGTPTTEEKTVRLSKIAKVEEIKTAPVIRHSGGLRSAQISVTPSGDNLGQVVQAVNNKV 906

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
             E    S +            +  ++  + ++ + + + + +   F      L  + ++ 
Sbjct: 907  DETELPSGVTQDTSGVGAEQADAFKQMGLAMLAAILIVFVILVATFKSLIQPLILLVSIP 966

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T ++G   L      L ++  +L LIG  V + +V+ D +          +  R  +
Sbjct: 967  FAATGSIGLLLLTDTPLGLASLIGLLMLIGVVVTNAIVLIDLIN---HFRAHGVDLRTAV 1023

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV----WGGSVI-GSFAIPMAFGIVVAASSSIFIA 816
                       + T+ A   +++PMA+     GG  I    AI +  G+V +   ++ + 
Sbjct: 1024 VNGARLRFRPIIMTAAATIFALIPMALGLTGGGGVFISKPLAIVVIGGLVSSTLLTLILV 1083

Query: 817  APILLFIYDWRAKNA 831
              +   I  ++ +  
Sbjct: 1084 PVLYQLIEGFKERRR 1098



 Score = 80.9 bits (197), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 85/208 (40%), Gaps = 9/208 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                VL  ++KKI      +T+ +      +   +L+R+G +G+I + + +L+++    
Sbjct: 298 EGVKDVLPELEKKIGNNAEFTTVFDQSPYINQSIEDLVREGGLGLIFAVLVILVFLL--- 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +        ++ L +  T+      G   N+  +AA+   IG  V+D +VV + +R   
Sbjct: 355 SFRATAITAISIPLSLLVTMLAIWRTGYSLNMLTLAALTMSIGRVVDDSIVVIESIR--- 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +  T   +    I  +++E  G    +++       P+A   G        FA+  +  +
Sbjct: 412 RRQTLGGTKFANIFAAVSEVAGAITSSTLTTVAVFTPLAFITGQTGELFRPFALTTSIAL 471

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833
           + +   S+ I   +  +    R    ++
Sbjct: 472 LSSLLVSLTIVPVLAYWFLRARESRVKL 499


>gi|289549808|ref|YP_003470712.1| Putative antibiotic transport-associated protein [Staphylococcus
           lugdunensis HKU09-01]
 gi|289179340|gb|ADC86585.1| Putative antibiotic transport-associated protein [Staphylococcus
           lugdunensis HKU09-01]
          Length = 835

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/596 (11%), Positives = 193/596 (32%), Gaps = 60/596 (10%)

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
           +D       V           I++   +  A+I+ + +  +    +       L    + 
Sbjct: 98  KDIKNDDKHVDKISDPYQTKQISKDKSTAIAEITYDKSATSLSDKSRDNVKDHLKDLRDD 157

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
              +      G  +   G  + + G+++  +VL +         +   S  + +   + +
Sbjct: 158 HNVQTELTGNGMQTNEVGGSSELVGVIVAFVVLLITFGSFIAAGLPIVSALIGLGSGVGI 217

Query: 405 LSLLGATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
           +SLL     +P++     +++G+ + +D  + +  R R+  +        + +    A S
Sbjct: 218 ISLLTFAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGVGLAVGTAGS 277

Query: 462 TIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            +  + +T +IA   L   G   +        +S+  ++F+A++++ A++       K K
Sbjct: 278 AVIFAGVTVIIAVCGLSLVGIDFLSVMGFASAISVAFAVFSALTLLPALISIFHNQIKPK 337

Query: 522 SIDINPLSRFFLIPDCIAIQF--------------------MRARFWGVGISILFSICSI 561
           +      +          +                                         
Sbjct: 338 TTKSEFKNHVDTPWSKFVVGNSLAAVLLGLIILVAAAIPVSHMRLAIPDDGVKPSDTTQK 397

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV-----------RSNLESLQIGDISFQN 610
                    +G  F G I + +      D                S+++++ +      +
Sbjct: 398 KAYDIISDKFGEGFNGQIPMLINVKDQKDNPQQLQKDLKSLYKDVSDMKNVDVVSQPQMS 457

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG- 669
            + +   +  +  +  ++ A   +++ ++    +       +        I+ ++ +K  
Sbjct: 458 KNNDYALMAVIPKKGPNTEATNDLVQDLRDYNKDAKDKYGFKTEISGQSVINIDMSKKLN 517

Query: 670 ----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFG 715
               +   +I  +A ++ + +       L A+   +L +  TLGF            LFG
Sbjct: 518 EAIPLFAGVIVILAFVLLMIVFRSIIIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFG 577

Query: 716 IEFNLTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           +E     +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+  
Sbjct: 578 VETTGPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTRDNAYSIKVGLKESGP 634

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYD 825
             +  ++  F            +I S  + ++FG++  A    + I   +      
Sbjct: 635 VIIAAALIMFSVFFAFVFQEDVMIKSMGMALSFGVLFDAFVVRMMIIPALTQLFGK 690



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/260 (11%), Positives = 87/260 (33%), Gaps = 7/260 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
             G +   +  +    L  ++++ + +      +Q     K+    +     D  A +  
Sbjct: 81  DNGIVSKSMTKDIKKTLKDIKNDDKHVDKISDPYQTKQISKDKSTAIAEITYDKSATSLS 140

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
            +        +  L    N +        +    G    ++  I   + + I F  +  A
Sbjct: 141 DKSRDNVKDHLKDLRDDHNVQTELTGNGMQTNEVGGSSELVGVIVAFVVLLITFGSFIAA 200

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNMKL 750
              I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   ++
Sbjct: 201 GLPIVSALIGLGSGVGIISLLTFAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR---QV 257

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
             T   +   +  ++       ++  +   I+V  +++ G   +       A  +  A  
Sbjct: 258 MKTETDYIKGVGLAVGTAGSAVIFAGVTVIIAVCGLSLVGIDFLSVMGFASAISVAFAVF 317

Query: 811 SSIFIAAPILLFIYDWRAKN 830
           S++ +   ++   ++     
Sbjct: 318 SALTLLPALISIFHNQIKPK 337


>gi|325526471|gb|EGD04047.1| multidrug efflux protein [Burkholderia sp. TJI49]
          Length = 386

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 34/405 (8%), Positives = 91/405 (22%), Gaps = 28/405 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++   I   G             + ++P   P              +       
Sbjct: 8   RPVFAWVIALFIMLGGAFAI-----RALPVAQYPDIAPPVV---------SIYATYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   +          +       + L+F      +  A +V   L+ V
Sbjct: 54  AQVVEESVTALIEREMNGAPGLLYTSATSSAGMASLYLTFRQGVNADLAAVEVQNRLKTV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    +++ +      +   ++     +      ++         +  +   +   +
Sbjct: 114 EARLPEPVRRDGIQVEKAADNIQLVVSLTSEDGRMTDVQLGEYASANVVQALRRVDGVGK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP ++     T + ++      N        G   + DS      
Sbjct: 174 VQFWGA-EYAMRIWPDPVKMAGHGLTASDIASAVRAHNARVTVGDIGRSAVPDSAPIAAT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +                          +             I            
Sbjct: 233 VFADAPL-------------KTPADFGAIALRTQADGSALLLRDVARIEFGGNDYNYPSY 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +   V            +   T +        L A   P     +          S +  
Sbjct: 280 VNGKVATGMGIKLAPGSNAVATEKRVRETMDELSAYFPPGVKYQIPYETSSFVRVSMNKV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
             T      LV +V+F+ +   +  L+    + + +  T  ++  
Sbjct: 340 VTTLVEAGVLVFLVMFLFMQNLRATLIPTLVVPVALAGTFGVMYA 384


>gi|168187981|ref|ZP_02622616.1| protein-export membrane protein SecD [Clostridium botulinum C str.
           Eklund]
 gi|169294182|gb|EDS76315.1| protein-export membrane protein SecD [Clostridium botulinum C str.
           Eklund]
          Length = 421

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 89/254 (35%), Gaps = 8/254 (3%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           Y    K  I L +  +     +         +I            N    +         
Sbjct: 152 YDDMQKPTIGLELKPDGSKKFAEATQKFLGKKITIYMDGEVLTSPNVQSVITGGKATITG 211

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWI 686
              + E   +          +    +    +   L    +        I    +LI++ +
Sbjct: 212 SATLEEAKHQASVIKSGALPVSLEAVEFKTVGATLGANALPLSMKAGAIGIGLILIFMLL 271

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            +K    + A   LI  +   LG F        L+ +A  L  +G +V+  V++++R+++
Sbjct: 272 YYK-GPGVMADIALIFYVLIVLGTFVAVKATLTLSGIAGFLLTVGMAVDANVLIFERIKE 330

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +KL     S +  +D   N  L   + +++   I+ + +   G   +  FA+ +  GIV
Sbjct: 331 ELKL---GKSLKVAVDAGFNRALSSILDSNITTIIAGIVLYYLGSGAVKGFALTLMIGIV 387

Query: 807 VAASSSIFIAAPIL 820
           ++  +++ +   ++
Sbjct: 388 LSIFTALTVTRMLI 401



 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 223/385 (57%), Gaps = 27/385 (7%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +   + V +  IE+++E++  R++  G+ E+++QR G +RI I++PGE D  ++ + 
Sbjct: 63  VLEEVKGNNVSNETIERTIELLSMRVNPEGVKETSVQREGKNRIRIEIPGEFDSKKVLES 122

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +G T K+ F                               KV ++G  +      +    
Sbjct: 123 IGKTGKLEFKGPDN--------------------------KVILTGADVKD-ATAYYDDM 155

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            KP + +     G+++F E T+  +GK + + +DG VLT+P +   I  GKA I+G+ T+
Sbjct: 156 QKPTIGLELKPDGSKKFAEATQKFLGKKITIYMDGEVLTSPNVQSVITGGKATITGSATL 215

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A   A+++++G+LP+ L  VE + VGA LG++++     A   G+ LI++FM++ Y  
Sbjct: 216 EEAKHQASVIKSGALPVSLEAVEFKTVGATLGANALPLSMKAGAIGIGLILIFMLLYYKG 275

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G++AD ++   V++ L     + ATLTL  IAG +L +G+AVD+N+L+ ERI+EE +  
Sbjct: 276 PGVMADIALIFYVLIVLGTFVAVKATLTLSGIAGFLLTVGMAVDANVLIFERIKEELKLG 335

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  ++D GF+RA S+I DSNIT +IA +VL++ G GAV+GFA+T+ + I++S+FTA++
Sbjct: 336 KSLKVAVDAGFNRALSSILDSNITTIIAGIVLYYLGSGAVKGFALTLMIGIVLSIFTALT 395

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSR 530
           + R ++   +    +       + R
Sbjct: 396 VTRMLIKLGMNMGLLSKASHFGVKR 420



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           + L+ ++     ++A   F     +  +        I+ GLDL+GG  ++ EV  ++  N
Sbjct: 15  IALFILVVIAIGILAYGGFFGIKNIFGYRVKPFSESINKGLDLQGGISVLEEVKGNNVSN 74

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVN 123
             ++   + L   +  EG+   S+++   N+I +        + + + +    +   
Sbjct: 75  ETIERTIELLSMRVNPEGVKETSVQREGKNRIRIEIPGEFDSKKVLESIGKTGKLEF 131


>gi|332306689|ref|YP_004434540.1| acriflavin resistance protein [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332174018|gb|AEE23272.1| acriflavin resistance protein [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 1144

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 58/512 (11%), Positives = 139/512 (27%), Gaps = 23/512 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++      +       +P+                        
Sbjct: 9   KRPVAVWMFTFAVVLFGMVSLSRLAINLLPELSYPTLT--------------IRTDYVGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E    +K       S    Q+ + L F      +  + +V   L  
Sbjct: 55  APGEIEQLVSKPIEESIGVVKGVRKVTSSSTSGQSDVLLEFEWGTDMDMASLEVREKLDI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L +D +K +L+        ++           +A          +   + +     
Sbjct: 115 L--ILPLDVEKPVLLRFNPSLDPVMRLGFGFAHHTVNATSH----DASQAPALDVHGMKR 168

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
            R  + + + +           ++ G         V    + +  +     ++       
Sbjct: 169 LREYAEQQIKRKLESISGVASIKIGGGLESEIQVLVDQQKASQLAIPMSEIIKRLKEENV 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G             +   + D+       +         I           
Sbjct: 229 NAAGGRVEDGSQAYTVRTLNQFTSIADMQDVFIARRDNKNIRLGDIAVIQDAYKERDSVT 288

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                   +     +   +     +        L +         +          +   
Sbjct: 289 RFDGLEGVEIAIYKEGDANTVQVAQNVNNALRQLESALPENYTIQLIYDQSVFIANAIDD 348

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K    I   L + VL++ +      L+   SI +++I T  L+     +L + S+ GI 
Sbjct: 349 VKSAGIIGGILAMFVLYLFLRNIWPTLIISISIPVSIIATFNLMYGNNISLNIMSLGGIA 408

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L IGL VD+ I+V E I    +    +  +   G  +    I  S +T +     L F  
Sbjct: 409 LAIGLLVDNAIVVLENIERHKKTEADIHQAAAKGTKQVSMAIIASTLTTMAVFFPLVFVK 468

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
              G      A+T+  ++  S+  A++++  +
Sbjct: 469 GIAGQLFADQALTVTFALGASLIVALTVIPML 500



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 84/266 (31%), Gaps = 5/266 (1%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                I     + +    N+ + L  +    ++ +  D   +    E   +   +    +
Sbjct: 248 NQFTSIADMQDVFIARRDNKNIRLGDIAVIQDAYKERDSVTRFDGLEGVEIAIYKEGDAN 307

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VIISAIAMLIYIWI 686
           +V   + +    +++   +P +                I       +I   +AM +    
Sbjct: 308 TVQVAQNVNNALRQLESALPENYTIQLIYDQSVFIANAIDDVKSAGIIGGILAMFVLYLF 367

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               +  L    ++ + I  T        I  N+ ++  +   IG  V++ +VV + +  
Sbjct: 368 LRNIWPTLIISISIPVSIIATFNLMYGNNISLNIMSLGGIALAIGLLVDNAIVVLENI-- 425

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +   T         K   +     + +++       P+    G     FA   A  + 
Sbjct: 426 -ERHKKTEADIHQAAAKGTKQVSMAIIASTLTTMAVFFPLVFVKGIAGQLFA-DQALTVT 483

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
            A  +S+ +A  ++  +      +++
Sbjct: 484 FALGASLIVALTVIPMLAARERNSSK 509



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 29/196 (14%), Positives = 70/196 (35%), Gaps = 7/196 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V +          ++ ++   + I ++    +IQ       +  +         + 
Sbjct: 905  GQQRVAVISANLAYGDLSQAVDAANQHIRDMQLPLSIQARVAGQSEEMKTSFASLKFALA 964

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGY 732
            ++   + + +  +F+       I   +  +      F LF      ++     ++ L G 
Sbjct: 965  LAIFLVYLVMASQFESLLHPLLILLTV-PLACAGSIFGLFITQTHISVVVFIGLIMLAGI 1023

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             VN+ +V+ DR+    +L T  ++    I  +    L   + T++   + +LPMA  G  
Sbjct: 1024 VVNNAIVLIDRIN---QLRTEGVAKAQAILDAAQNRLRPILMTTLTTSLGLLPMA-LGLG 1079

Query: 793  VIGSFAIPMAFGIVVA 808
                  +PMA  ++  
Sbjct: 1080 EGAEMRVPMAITVIFG 1095


>gi|328544346|ref|YP_004304455.1| RND transporter HAE1/HME family, permease [polymorphum gilvum
           SL003B-26A1]
 gi|326414088|gb|ADZ71151.1| RND transporter, HAE1/HME family, permease protein [Polymorphum
           gilvum SL003B-26A1]
          Length = 1171

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/523 (11%), Positives = 134/523 (25%), Gaps = 42/523 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R    + +L   +   G+             +  P                   +  + 
Sbjct: 9   LRRPKTVFVLMLALVVAGV-----TAYFAIPKEDTPDIDVPVFY---------ISVSQQG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              +     L    +     L           +    I L F  S  K+     V   + 
Sbjct: 55  ISPEDAERLLVRPMETELRGLDGLKEITAIASEGHAAIILEFDISFDKDEALADVRDKVD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              SKL  +  +  +  T    +  +    + +       + +    R+   +I   ++ 
Sbjct: 115 QAKSKLPAEADEPTISETNFALLPTITVTLSGNVPERTLYQHA----RRLKAEIEAIDTV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      L    D  +L     T  ++       N             R +    
Sbjct: 171 RSADLSGHREELLEVLIDTRKLESYSITQEELITSLTQNNQLVPAGFLDSGKGRFNVKVP 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            LVE                      + V  +   + G           I +        
Sbjct: 231 GLVETA--------------------QDVYALPLKQSGEGLVTLGDVAEIRRTFKDATSY 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + +   +     +    +     A         +             
Sbjct: 271 TRVNGRPAIALQVTKRIGTNVIENNDAVRSVVQAAAADWPETIRVDIMLDQSANIYEVLG 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +      LV++++   +      L+   +I  + ++   +LS LG T+    + G+
Sbjct: 331 SLQSSILTAIFLVMVLVVASLGLR-SALLVGLAIPTSFMVGFLILSGLGYTVNTMVMFGL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +G+ VD  I++ E    +  +      +        +  I  S  T L A + +  +
Sbjct: 390 VLTVGMLVDGAIVMVEYADRKIAEGMEDREAYIRAAKLMFWPIVSSTATTLAAFLPMLLW 449

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               G  +    I + + +  S+ TA+  +             
Sbjct: 450 PGVAGEFMSYLPIMVIIVLTASLLTAMVFLPVTGGIFAAVSHW 492



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/233 (11%), Positives = 76/233 (32%), Gaps = 10/233 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMVKKKITEIVPL 648
           D++ +R   +                    R+      ++ A   V++       E + +
Sbjct: 256 DVAEIRRTFKDATSYTRVNGRPAIALQVTKRIGTNVIENNDAVRSVVQAAAADWPETIRV 315

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             + +      ++   L    +  + +  + ++  + +R      L   T+ ++      
Sbjct: 316 DIMLDQSANIYEVLGSLQSSILTAIFLVMVLVVASLGLRSALLVGLAIPTSFMVGFLILS 375

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           G     G   N   +  ++  +G  V+  +V+ +      +     +  R+   ++    
Sbjct: 376 G----LGYTVNTMVMFGLVLTVGMLVDGAIVMVE---YADRKIAEGMEDREAYIRAAKLM 428

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAI--PMAFGIVVAASSSIFIAAPI 819
               V ++     + LPM +W G      +    M   ++ A+  +  +  P+
Sbjct: 429 FWPIVSSTATTLAAFLPMLLWPGVAGEFMSYLPIMVIIVLTASLLTAMVFLPV 481



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 72/182 (39%), Gaps = 26/182 (14%)

Query: 672  GVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTL 729
             ++ S   M + +  +F  +Y     ++T+++ +   L    + G +F++      ++ L
Sbjct: 943  AMVASLFLMFVILLTQFNSFYQTFLTLSTVVMSVMGVLLGMLITGQKFSIIMTGTGIVAL 1002

Query: 730  IGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
             G  VN+ +V+ D   R R++       +   D I K+  + +   + T++     ++PM
Sbjct: 1003 AGIVVNNAIVLLDTYNRFRED------GMESLDAILKTSAQRIRPIMLTTITTIAGLIPM 1056

Query: 787  A----------VWGGSVIG-----SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A          V     I        +  + FG+  +   ++ +   ++     W A   
Sbjct: 1057 ATQVNFDFFNQVTAVGSITAIWWIQLSTAVIFGLGFSTILTLILIPTMIAAPGVWTASAR 1116

Query: 832  RI 833
            R+
Sbjct: 1117 RL 1118


>gi|326329386|ref|ZP_08195710.1| membrane protein YdfJ [Nocardioidaceae bacterium Broad-1]
 gi|325952712|gb|EGD44728.1| membrane protein YdfJ [Nocardioidaceae bacterium Broad-1]
          Length = 696

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 64/513 (12%), Positives = 153/513 (29%), Gaps = 44/513 (8%)

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A      +   +    L I    +   ++            +   ++I+LFM        
Sbjct: 144 AYEPFLEIADETATDDLQIEMAGDSMREVNEGEGGSSEGIGMLAALVIMLFMF-GSFLAA 202

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA---VDSNILVNERIREENRK 444
            +   +    V  T  +++LL    T+P     +L I      +D  +LV  R R E   
Sbjct: 203 SLPLITAIFAVGTTFGVVTLLSHLTTIPDYTAPMLMIVGLGVGIDYALLVFSRYRSELLH 262

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
             +   +       A  ++  + ++ ++A   L+     +++G  + + L++L++M  A+
Sbjct: 263 GATREDATATAIDTAGRSVLFAGVSVILALCGLYVLRLTSIQGVVLGVALTVLMTMIAAV 322

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           +++ +++    +  +         SR        +      R     + +          
Sbjct: 323 TLLPSLLTLFGKRLEKSVRRHAARSRREPGQRWRSWASGVQRHPWAALLVSLVALGALAT 382

Query: 565 FTHGLNYGIDFKGG------------------------IQLGVLANRPVDLSVVRSNLES 600
              GL  G    G                           + +        +     ++ 
Sbjct: 383 PVLGLQLGFADAGNDDPSSTTRKAYDLVSDKFGPGANGPLVIMTEGSQGQAAAAYEKVQG 442

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                            +      P          E+VK    ++   + +  +      
Sbjct: 443 YDGVAAVTPPQPSADGAVFTSIAFPETGPQDAETTELVKDLRADLGDDALVGGSTAALID 502

Query: 661 ISRELIRKG--IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF------A 712
            S  + +K    +G+++   A+L+    R     A+ A    ++ I  ++G         
Sbjct: 503 YSDAVGKKLPLFIGLVVGLSALLLMCVFR-SVAVAIKAAVLNLISIGASMGAMTYVFQEG 561

Query: 713 LFGIEFNLT----AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           L G+E         V     + G S++ +V +  RMR+       S   ++ + + +  T
Sbjct: 562 LLGVEPGPIEAFLPVMTFAIVFGLSMDYEVFLISRMREEWL---RSGDAQEAVLEGLAHT 618

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
            G          +           ++      M
Sbjct: 619 GGVITAAGAIMVVVFGAFWFSPDRMLQEMGFVM 651



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 81/264 (30%), Gaps = 7/264 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           I  + G      A   +   +               +    E      +         + 
Sbjct: 81  IHDERGWNTDQQAVDDLLAELAEVPHVEAVEAADPQRGSVSEDGTTALVTIVMDAKPGEL 140

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
            +              +     E+ G  +      +G     I  +A L+ +   F  + 
Sbjct: 141 PISAYEPFLEIADETATDDLQIEMAGDSMREVNEGEGGSSEGIGMLAALVIMLFMFGSFL 200

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIGYSV--NDKVVVYDRMRKNM 748
            A   + T I  +  T G   L      +    A +L ++G  V  +  ++V+ R R  +
Sbjct: 201 AASLPLITAIFAVGTTFGVVTLLSHLTTIPDYTAPMLMIVGLGVGIDYALLVFSRYRSEL 260

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                  +  D    +I+      ++  ++  +++  + V   + I    + +A  +++ 
Sbjct: 261 L---HGATREDATATAIDTAGRSVLFAGVSVILALCGLYVLRLTSIQGVVLGVALTVLMT 317

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
             +++ +   +L        K+ R
Sbjct: 318 MIAAVTLLPSLLTLFGKRLEKSVR 341


>gi|302340286|ref|YP_003805492.1| acriflavin resistance protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637471|gb|ADK82898.1| acriflavin resistance protein [Spirochaeta smaragdinae DSM 11293]
          Length = 1030

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 180/683 (26%), Gaps = 42/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + L +     G+L        +  +  FP                    V    
Sbjct: 9   KRPVLTITLIAAFIVFGILA-----YLRISVSLFPDIKAPYVT---------IQTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++  S +              + +T+ F   + +     +V   ++ 
Sbjct: 55  SPQVIESQITERIEDQISAIADLESITSYSMDSVSLVTVEFTYGKDENLALQEVKDKVEV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L  D ++  +          V++     +      E            +       
Sbjct: 115 IISELPDDAERPAISKVDIASSMPVMNIVL--EGDMTPTELYTYASTTGSSGLAQVSGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S     ++  E D +          ++       N    G    +         + 
Sbjct: 173 SVEVSGGQEREIHVELDRTATFSRSIPLTQIVSMLAAANVELPGGSLKMNKEDFPVRFKG 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +   I  + +      F  +    VV               +   + +   +     
Sbjct: 233 EFNELDAIRDLDVESGVGTFKLRQLADVV--------------DSHAEVKERTVLFDKKD 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +                +    ++        L A S       V + +      + + 
Sbjct: 279 NIRNDNALLIQIIKNPTANTIDVVDGVMKRIKSLEAESDGRVSFKVVKEDASFVRDTVND 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +      +VL + +   +  L+   S+  ++I T  ++  +G +L + S+ G+ 
Sbjct: 339 TLSNVYLGILFTGLVLLIFLHDLRSMLIVAISMPFSIISTFLIMHAMGISLNILSLMGLS 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
              G  V ++++V E I        +   S   G       +F S +T +   V L    
Sbjct: 399 SATGTLVANSVVVLENIFRYKELGHNRVESASRGTKEVMMAVFASTLTNIAVFVPLANMS 458

Query: 482 GGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK---------SIDINPLS 529
           G        FA T+ ++ L S+F + ++   M   I+  K  K             +   
Sbjct: 459 GVMGATLSNFAYTIVIATLFSIFVSFTLTPLMASRILPEKIKKDGRIGNFLEKFFTSWER 518

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            +      I     R+    V    LF +        +         G I + V   +  
Sbjct: 519 FYAATLRGILKNRFRSALVVVATIALFMLALSKGSGVNFELMPTTDGGKIGINVELPQGS 578

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           +L    + L++++     +   +     L     +  D       + +  K        +
Sbjct: 579 ELESTAATLKAIEDRLAQYPEVETLLTTLGSTGSRDQDVNLARMEVFLNPKSERSASNSA 638

Query: 650 TIQNTEIVGPKISRELIRKGIVG 672
                      I    IR   + 
Sbjct: 639 IAARAIRDLADIPGAEIRISPIS 661



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 82/259 (31%), Gaps = 11/259 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKK 640
                +  D+    + ++   +      N   +   L+++   P  +       +    K
Sbjct: 251 TFKLRQLADVVDSHAEVKERTVLFDKKDNIRNDNALLIQIIKNPTANTIDVVDGVMKRIK 310

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITT 699
            +                    R+ +   +  V +  +   L+ +         L    +
Sbjct: 311 SLEAESDGRVSFKVVKEDASFVRDTVNDTLSNVYLGILFTGLVLLIFLHDLRSMLIVAIS 370

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +   I  T       GI  N+ ++  + +  G  V + VVV + +    +      +  +
Sbjct: 371 MPFSIISTFLIMHAMGISLNILSLMGLSSATGTLVANSVVVLENI---FRYKELGHNRVE 427

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIA 816
              +   E +     +++      +P+A   G   + + +FA  +    + +   S F  
Sbjct: 428 SASRGTKEVMMAVFASTLTNIAVFVPLANMSGVMGATLSNFAYTIVIATLFSIFVS-FTL 486

Query: 817 APILL--FIYDWRAKNARI 833
            P++    + +   K+ RI
Sbjct: 487 TPLMASRILPEKIKKDGRI 505



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 91/243 (37%), Gaps = 8/243 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S    +   +   Q    +K   + +        +Q  VL  V   +  I   +      
Sbjct: 789  SRYADIYFSNGYNQIMRTDKVRTIEISAGLLPGYSQGAVLNQVMAAVGAIDLPAGYSIKA 848

Query: 656  IVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                +   + +   +    I+ I   ++   I   +   L  + T+ L I   +G     
Sbjct: 849  AGTSESLNDTVTDLVTVFFIAIILTYMLLSAILESFVQPLFILATVPLSIIGIIGASLAT 908

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N  A+  V+ LIG  VN+ +++ D      +L  +  S  D + ++    L   + 
Sbjct: 909  GAVLNFVAMLGVIMLIGIVVNNAILILD---YYNQLKRSGKSSHDALIEACPTKLKPILM 965

Query: 775  TSMAAFISVLPMAV----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +++A  + +LPMA+     G  +     I +  GI+ +   ++++   + L +     K+
Sbjct: 966  SNIAIILGMLPMALGIGASGAEMRQPMGIVIIGGIISSTLMTLWVIPSLELLLSRHHLKS 1025

Query: 831  ARI 833
             R+
Sbjct: 1026 KRV 1028


>gi|295701187|ref|YP_003610188.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
 gi|295441510|gb|ADG20677.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
          Length = 1015

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 61/663 (9%), Positives = 175/663 (26%), Gaps = 42/663 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   I  +GL       L    +  +P                         
Sbjct: 9   KRPVLASVVSLFILVLGL-----RSLSTLKVSEYPQTGTGVVT---------ITTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + + GF+    +   + ++             + IT +   +        ++   +  
Sbjct: 55  SAETMAGFVTQPLEAAIAQVQGIDYMSSKSNTGVSSITATLRLNYDPNRALTEINTQIAS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L    ++ +L     +    +      D + S+ +  +  ++R    ++   E   
Sbjct: 115 MRNQLPPQAQQPVLTIQVGQTTDTMYMGFYSDVLPSNNV--TDYLLRVVKPKLDSIEGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    D + L     T + +       N                     
Sbjct: 173 TAEVLGGRQFALRAWLDSTSLAAHNVTASDVYTALGNNNYLATLGTTK------GQMTSV 226

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    ++               + +    +   +            N+           
Sbjct: 227 SLNAGTDL--------------HSVEDFKKLVVKQKNGAMVRLEDVANVVLGADNYDSNV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +     +    +   L+          +          +   
Sbjct: 273 AFSGKRSVFIGIKVAPDANLLDVAKRVKAVFPDLQKQLPTGMSGDIVYDATDFIETAIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V +V+++     +  +V  F++ L++I T  ++ LLG ++ L ++  +V
Sbjct: 333 VVKTLVEALLIVTLVIYLFFGSFRAVIVPLFAMPLSLIGTFFMMQLLGYSINLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L +GL VD  I+V E        + +  F +  +        I    +  +   + + F 
Sbjct: 393 LAVGLVVDDAIIVVENFDRHLTTEGKRPFDAALIAARELSGPILAMTVVLIAVYLPIGFQ 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           G   G     FA T+  ++ +S   A+S+   M   +   ++        + + F     
Sbjct: 453 GGLTGALFTEFAFTLASAVSMSGVVALSLSPMMCSRLFHNEQQPGRFNRFVHQQFEKVHR 512

Query: 538 IAIQFMRAR--FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             ++ +R+    W V + +   +    +         +  +    + +   +    + ++
Sbjct: 513 GYMRLLRSILDTWTVFVVMGAMLLCGTIYLFATSQSELAPQEDQGIVLSLIQGPPNATIQ 572

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                        +                 +      +     ++      L      +
Sbjct: 573 QMQMYADQVFQLSKQLPEYAQMFQLTGAPTLNQGFGGVLFTTWDRRKRGTSELQQELQQK 632

Query: 656 IVG 658
             G
Sbjct: 633 WNG 635



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 76/284 (26%), Gaps = 16/284 (5%)

Query: 547  FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
             +    S+      +                   L       +  S V     ++    I
Sbjct: 731  NYANYFSVAGRSYKVIPQVQQVDRMNPSQLLDYNLRTSDGSMIPASTVSHLKSTVVPESI 790

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
            +             +  +         +     +       +     +     +    +I
Sbjct: 791  NHFQQMNSATISAVVAPRVSQGEVLEFLRNATTRVAPSGYNMDYSGLSRQFMQESGGFVI 850

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI---EFNLTAV 723
                  VI+       +   R         I  L+       G      I     N+   
Sbjct: 851  TLMFAAVIVFLALAAQFESFRD-------PIVILVSVPLALFGALIFINIGVSTLNIYTQ 903

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
              ++TL+G      +++     +   L  +    R+ ++++    L   V T+ A  + V
Sbjct: 904  VGLVTLMGLISKHGILIVQFANE---LQRSGRGKREALEEAAGARLRPIVMTTAAMVLGV 960

Query: 784  LPMAVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFIY 824
            LP+ +  G+         + +  G+ +    ++F+   + + + 
Sbjct: 961  LPLVIASGAGAAGRNAIGLVIFTGLSIGTLFTLFVVPSMYMLLG 1004



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 90/249 (36%), Gaps = 6/249 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  V + +      D +         F+        + +   + ++ V   + + +P
Sbjct: 252 MVRLEDVANVVLGADNYDSNVAFSGKRSVFIGIKVAPDANLLDVAKRVKAVFPDLQKQLP 311

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                +            I + +  ++ + + + + I++ F  +   +  +  + L +  
Sbjct: 312 TGMSGDIVYDATDFIETAIDEVVKTLVEALLIVTLVIYLFFGSFRAVIVPLFAMPLSLIG 371

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T     L G   NL  + A++  +G  V+D ++V +    +  L T      D    +  
Sbjct: 372 TFFMMQLLGYSINLLTLLALVLAVGLVVDDAIIVVENF--DRHLTTEGKRPFDAALIAAR 429

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E  G  +  ++      LP+   G   G++   FA  +A  + ++   ++ ++  +   +
Sbjct: 430 ELSGPILAMTVVLIAVYLPIGFQGGLTGALFTEFAFTLASAVSMSGVVALSLSPMMCSRL 489

Query: 824 YDWRAKNAR 832
           +    +  R
Sbjct: 490 FHNEQQPGR 498


>gi|149915905|ref|ZP_01904429.1| RND family efflux transporter [Roseobacter sp. AzwK-3b]
 gi|149810228|gb|EDM70074.1| RND family efflux transporter [Roseobacter sp. AzwK-3b]
          Length = 1029

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 68/512 (13%), Positives = 154/512 (30%), Gaps = 44/512 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I   G+            +   P                         
Sbjct: 14  RRPYLAAVMSLLIMIAGIGALW-----GIEVRELPDVDRPVV---------SVRANFPGA 59

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V+  L    +   + +        S  +   ++ + F+  R   N ++ V   +  
Sbjct: 60  SPTTVDAELASVVEGAVARVAGVQAVRTSSEEGNFRMRVEFSPDRDLANASNDVREAVSR 119

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    +   +V + +    IV      +     A   +  +    + +    +   
Sbjct: 120 VENRLPDGVEDLFVVKSEQDADPIVNIAVWSEARSIDA--LTRLVEDALVPEFTAIDGVA 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +        L     P RL     +  +++              F    L        
Sbjct: 178 DVVLFGDRQRVLRVAVRPDRLAAFGLSIGEVANVLRAAQFDVPVGSFSSSPLEVLVRADA 237

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V D   I  + L                          R       ++   LA      
Sbjct: 238 TVADPARIEDLMLRD------------------------RIRLGDVADVYFGLATPSSVA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L   ++       +AQ +     +      + LR     +    V   +     G+ + 
Sbjct: 274 RLDGRLVINLGIVRQAQSNTVRISDQVQGAISQLRQRFPDLGF-QVTSDDAVFIRGAIAE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V+ V+++        L+   +I + ++ ++A + L+G ++ L ++  +V
Sbjct: 333 VLKTLGAALLIVIGVMWLFFGRLSATLIPAVAIPVALVGSVAGIWLMGFSINLITLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L  GL VD  I+V E I+   +   +   +  +G S+ +  +  + +T +   V + F  
Sbjct: 393 LATGLVVDDAIVVTENIQRRRQDGMAPRAAAVLGASQVFFAVIATTLTLIAVFVPISFLP 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAM 510
              G     F   + +++ IS F A++I   +
Sbjct: 453 GDAGRLFTEFGFVLAVTVAISSFVALTICPML 484



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 20/154 (12%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 670 IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +  +  + + ++  +W+ F +    L     + + +  ++    L G   NL  + A++ 
Sbjct: 334 LKTLGAALLIVIGVMWLFFGRLSATLIPAVAIPVALVGSVAGIWLMGFSINLITLLALVL 393

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             G  V+D +VV + +    +     ++ R       ++     + T++      +P++ 
Sbjct: 394 ATGLVVDDAIVVTENI---QRRRQDGMAPRAAAVLGASQVFFAVIATTLTLIAVFVPISF 450

Query: 789 WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
             G        F   +A  + +++  ++ I   +
Sbjct: 451 LPGDAGRLFTEFGFVLAVTVAISSFVALTICPML 484



 Score = 42.8 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 6/133 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               AL  + T+   +   +    L G   N+ +   +L LIG    + +++ +      
Sbjct: 868 SLTSALVVMLTVPFGVCAAIYAMLLTGTTVNIYSQIGILMLIGVMAKNGILLVEFAN--- 924

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
           +L        D   ++    L     T +   +S LP+ +    G     S    +  G+
Sbjct: 925 QLRDAGRPVIDAAFEAAQARLRPIAMTLICTVMSGLPLILGSGPGAEARASIGWVIVGGL 984

Query: 806 VVAASSSIFIAAP 818
            +AA  ++F+   
Sbjct: 985 GLAAVFTLFLTPA 997


>gi|283856329|ref|YP_162513.2| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|283775326|gb|AAV89402.2| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ZM4]
          Length = 1083

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/603 (11%), Positives = 165/603 (27%), Gaps = 47/603 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI  +G+L A      ++  D FP                   ++ + 
Sbjct: 9   LRRPYTFIVMAVMIFIVGILSAF-----KTPTDIFPDIKIPI-----------VAVIWQF 52

Query: 61  DE--DDFVNGFLQMYSDELRSFL-KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                D +   +        + +                 + + F           ++T 
Sbjct: 53  QGMSPDDIQSRINTPYQRAMTTVVNNIDHLEAMSIANFGIVKIFFQPGTDIRLANAQITA 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q V   L       L++  +   + I+    +   +     + +          +   
Sbjct: 113 SAQTVLRSLPRGINPPLILNYSASTVPILQLSVHGKGLTEQ--QLNDLSFNAVRAGLITV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
             +         + Q+  + DP  L+    T   +S                +   + + 
Sbjct: 171 PGSAIPYPWGGRVRQIQFDVDPHALQSKGLTAQDISNTIAQQTQITPAGFAKIGPYQYNI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               +     ++                      +    +     +     ++    A  
Sbjct: 231 RLNNVPGSTEQL--------------------NHLPIKTVNGATVYVSDVAHVRDGAAPQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S              L  G                   
Sbjct: 271 TNVVHVDGARSVLLTVYKNGSASTVSVAAGILAKIPSLLVGLPSTLRVDALTNQAIFVQE 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S      AI A L  +++ + +   +  ++   SI L ++  L LLS  G TL + ++
Sbjct: 331 AISGVAREAAIAAVLTSLMIMLFLGSWRSTVIIAISIPLAIMSALGLLSAFGQTLNIMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I       + V  ++  G  +  +    S +   IA V +
Sbjct: 391 GGLALAVGILVDDGTVTIENINWHLEHGKDVIPAIIDGAMQIATPALVSTLCICIAFVPM 450

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS---RF 531
           FF  G          +++  ++L S   + ++V  + +++++    K    + +     F
Sbjct: 451 FFLPGIAGFLFAPMGMSVIFAMLASFLLSRTLVPTLAMYLLKPIPHKHDPEHAVKSSNIF 510

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                     F + R   V +           +        + F     LG      +D 
Sbjct: 511 VRFQQGFEHHFEKMRLGYVHLLEKALRAKWLFIVAFYGFVILSFTLSPFLGRNFFPSIDT 570

Query: 592 SVV 594
             +
Sbjct: 571 GSI 573



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 72/250 (28%), Gaps = 6/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V         V      +    ++   +        V              +L  +   
Sbjct: 249 TVNGATVYVSDVAHVRDGAAPQTNVVHVDGARSVLLTVYKNGSASTVSVAAGILAKIPSL 308

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +  +     +         +   +        I + +  L+ +     W   +    ++ 
Sbjct: 309 LVGLPSTLRVDALTNQAIFVQEAISGVAREAAIAAVLTSLMIMLFLGSWRSTVIIAISIP 368

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L I   LG  + FG   N+  +  +   +G  V+D  V  + +                I
Sbjct: 369 LAIMSALGLLSAFGQTLNIMTLGGLALAVGILVDDGTVTIENIN---WHLEHGKDVIPAI 425

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP-MAFGIVVAASSSIFIAAPIL 820
                +    ++ +++   I+ +PM    G  I  F    M   ++ A  +S  ++  ++
Sbjct: 426 IDGAMQIATPALVSTLCICIAFVPMFFLPG--IAGFLFAPMGMSVIFAMLASFLLSRTLV 483

Query: 821 LFIYDWRAKN 830
             +  +  K 
Sbjct: 484 PTLAMYLLKP 493



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            +    Q  D  A +  +  V  K+ +  P             ++      G  G++ + +
Sbjct: 841  IYGSIQGRDLGAVSNDILKVIHKMEKQKPKGVTVTLRGQYQTMNTAFQGMGF-GLLGAIV 899

Query: 679  AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + I I F  W      I  L   +   +    +     ++ A+   +  +G + ++ 
Sbjct: 900  LIYLLIVINFQSWLDPFIVIAALPGALAGIIWMLFVTKTTLSVPALTGAIMCMGVATSNS 959

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            V+V    R+         +      ++    L   + T++A  I +LPMA+    GG   
Sbjct: 960  VLVISFCRE---KMEEGFTSAQAALEAGATRLRPVLMTALAMIIGMLPMALGLGDGGEQN 1016

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                  +  G++VA ++S+F    +   ++    K 
Sbjct: 1017 APLGRAVVGGLIVATTASLFFVPSLFSLMHRNDPKK 1052


>gi|300855504|ref|YP_003780488.1| putative cation/multidrug efflux pump [Clostridium ljungdahlii DSM
           13528]
 gi|300435619|gb|ADK15386.1| predicted cation/multidrug efflux pump [Clostridium ljungdahlii DSM
           13528]
          Length = 1046

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 148/542 (27%), Gaps = 41/542 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++   +  +G+             D  PS                        
Sbjct: 9   KKPAAITMVILFLLGLGIF-----GYTHLGADLMPSMDIPVI---------SISTTYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + +        + R+   + T+ F  S         V   +  
Sbjct: 55  SSEDIRKDVVKPMEDAVAGISGIDRINSTAREGMGQTTIIFKSSANMNTAFLDVQKAVDN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  +  K +L       +S ++   + +        ++  I     + +   +   
Sbjct: 115 AQGKLPKNADKPILFKLDTGAMSALMLSVSGNLSYDELYNEANTIT----EALKKVQGVG 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     QL  + + S +         ++      N +          L  S     
Sbjct: 171 NVSLEGIQKKQLIIKLNKSAIEFYGINLNTLTSKLQSDNINMPAGQIKQDKLNQSVRVIS 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E                        V ++     G          ++           
Sbjct: 231 KFES--------------------VDEVKNLLIPTSGNSTVRLGDIADVNLEYPEQDQRI 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            ++  +    +       A L+              +      S S 
Sbjct: 271 RMNGKNTIGISIQKQSDANVVEVVNNVKKEIAGLKKDMPSNIRLDTAYDSTTFINSSISQ 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T         +VL + +   +  LV   +I  ++I T  ++ ++  T+ + S+ G+ 
Sbjct: 331 IKHTLIEGVITTALVLLIFLKSWRSSLVILVAIPTSLISTFFMMYVMKFTMNIMSLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLF 478
           L +G  VD +I+V + I+      +    +   G      A   I   ++   +    + 
Sbjct: 391 LCVGTLVDDSIVVLDNIQRHLAMKKDPQSAAIDGRKEIGLASIAITLCDVVVYLPVCFMT 450

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F +T+  + L S+F A +I   +   +++ ++ +      L   F      
Sbjct: 451 GMVGTYFREFGLTIVFASLFSLFVAFTITPMLSSRLLKTEENRQAKSGMLKSKFKQSIFY 510

Query: 539 AI 540
            I
Sbjct: 511 RI 512



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 83/242 (34%), Gaps = 25/242 (10%)

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
             S Q+   +    V       +  +   + + + +K+  +      +       K   + 
Sbjct: 808  NSPQSISRKDRQDVATISANIEGRSLGTISQQINEKLKSLSVPEGYKIQFGGDQKSMGDS 867

Query: 666  IRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                   + +S I + +I + +   +      + +L   +    G  A+ G   N+ ++ 
Sbjct: 868  FTSLGEALGVSLILIYMILVVLYESFLTPFIRMLSLPCALVGAFGILAITGKTLNMMSLI 927

Query: 725  AVLTLIGYS-------VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             ++ L G +       ++              L     S R+ + +S    L   + TS+
Sbjct: 928  GLIMLDGLASKNGTLLIDYT----------NTLIKRGYSLREALIESGERRLRPIMMTSL 977

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR----AKN 830
               + +LP A+    G  +  S A+ +  G++ +   +  I   I L + + +     K 
Sbjct: 978  TMIVGMLPAALSIGEGSELKSSMAVLVIGGMIASTIFTPIILPIIYLMMDNLKNRIFKKR 1037

Query: 831  AR 832
             +
Sbjct: 1038 KK 1039



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 74/256 (28%), Gaps = 7/256 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    N  V L  +          D   +        +   +    + V     ++   
Sbjct: 242 LIPTSGNSTVRLGDIADVNLEYPEQDQRIRMNGKNTIGISIQKQSDANVVEVVNNVKKEI 301

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
             + + +P +   +T           I +    +I   I   + + I    W  +L  + 
Sbjct: 302 AGLKKDMPSNIRLDTAYDSTTFINSSISQIKHTLIEGVITTALVLLIFLKSWRSSLVILV 361

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            +   +  T     +     N+ ++  +   +G  V+D +VV D +    +        +
Sbjct: 362 AIPTSLISTFFMMYVMKFTMNIMSLMGLSLCVGTLVDDSIVVLDNI---QRHLAMKKDPQ 418

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
                   E    S+  ++   +  LP+    G V      F + + F  + +   +  I
Sbjct: 419 SAAIDGRKEIGLASIAITLCDVVVYLPVCFMTGMVGTYFREFGLTIVFASLFSLFVAFTI 478

Query: 816 AAPILLFIYDWRAKNA 831
              +   +        
Sbjct: 479 TPMLSSRLLKTEENRQ 494


>gi|282921127|ref|ZP_06328845.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           C427]
 gi|282315542|gb|EFB45926.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           C427]
 gi|315195052|gb|EFU25440.1| putative transport protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 824

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 75/592 (12%), Positives = 198/592 (33%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           IN+   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAVGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    ++ K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKHIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG-------- 577
           N                  A      I ++ +   +  +     + G+            
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 578 --------------GIQLGVLANRP---------VDLSVVRSNLESLQIGDISFQNFDGE 614
                          + + V   +            +     + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKQGPNAESTNDLVHDLRDYNKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDYIKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSALTLLPALISIFHKHIKVNK 338


>gi|304312019|ref|YP_003811617.1| Heavy metal efflux pump, CzcA family [gamma proteobacterium HdN1]
 gi|301797752|emb|CBL45974.1| Heavy metal efflux pump, CzcA family [gamma proteobacterium HdN1]
          Length = 1041

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/601 (12%), Positives = 177/601 (29%), Gaps = 33/601 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N  L++L   +   G  + LP    +  LD FP                   + +  + 
Sbjct: 11  RNRLLIVLLLAVFVAGAAVLLP----RLNLDAFPDVTR-------------VQVEINTEA 53

Query: 63  DDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  ++       + +   L          +   + +T++F D          V   
Sbjct: 54  PGLAAEEVEQLITFPIEAVMYALPDVESVRSVSKTGLSGVTVAFKDGTDVYAARQWVFER 113

Query: 119 LQGVNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
           L+   S++        +   T+           +       A+             +   
Sbjct: 114 LEAARSEIPDGVGTPEMGPNTSGLGQVFQYLLRSEVPGQYDAMTLRSLNDWVAKLLLAPV 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               + L     + Q     DPSRL     +   +       N +  G+        D  
Sbjct: 174 PGVTEVLSYGGEVRQYQINVDPSRLLSYQISMDDIVTAIETNNRNAGGW------YLDRG 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q ++     + G           P      V +   ++    F    R      +   
Sbjct: 228 AEQLVIRGVGWVRGGTDGLEDLANIPVRIVKGVPVKVRDVARVEFGAEIRQGAVSMMRRG 287

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            DG+      +   I   +   + + T+         ++A      +             
Sbjct: 288 SDGKPEVLGEVVAGIVLKRMGANTDATLRGVRERLPAIQAALPKGVVIEPFYDQGDLIDK 347

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +             L+++VL + ++  +  L+   S+ +++ + L +++  G +  L S+
Sbjct: 348 AVHTVTKALLEAFILIVVVLLLFLMNLRAALLVLISVPVSIGIALMVMAWWGLSANLMSL 407

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCS--LDMGFSRAYSTIFDSNITALIATV 475
            G+ + IG+ VD ++++ E I       +    +  +          +F + +  +I   
Sbjct: 408 GGLAIAIGIMVDGSVVMMEHIFSHLSGRERHGIALRIQEAAREVGRPVFFAVLIIVIVFA 467

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            LF      G   +  AI++ L++L S++ A+ +V A+  ++ R        +       
Sbjct: 468 PLFSLEGVEGKLFQPMAISIVLAMLASLWVALMMVPALATYLFRAGVEHREALLMRWLTA 527

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                ++I             +LF      +            +G I + V      +L 
Sbjct: 528 AYRKLLSIALTARASVVGVALMLFIAAIWLVPHLGSEFVPELEEGTINIRVTLAPSANLD 587

Query: 593 V 593
            
Sbjct: 588 T 588



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/127 (21%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
              AL  + ++ + I   L   A +G+  NL ++  +   IG  V+  VV+ + +  ++ 
Sbjct: 374 LRAALLVLISVPVSIGIALMVMAWWGLSANLMSLGGLAIAIGIMVDGSVVMMEHIFSHLS 433

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                      I ++  E      +  +   I   P+    G     F  PMA  IV+A 
Sbjct: 434 -GRERHGIALRIQEAAREVGRPVFFAVLIIVIVFAPLFSLEGVEGKLFQ-PMAISIVLAM 491

Query: 810 SSSIFIA 816
            +S+++A
Sbjct: 492 LASLWVA 498



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 53/136 (38%), Gaps = 8/136 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L + +    G FAL+  G   ++      + L G +V + VV+   + +  +   + 
Sbjct: 904  LIMLNVPLALIGGVFALYLSGQYLSVPGSIGFIALFGVAVLNGVVM---VNEINQRVDSG 960

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASS 811
               R+ + +     L   + T+  A + ++PM +    G  V    A  +  G+  +   
Sbjct: 961  RPIREAVFEGACSRLRPVMMTACIAALGLVPMLLATGIGSEVQRPLATVVVGGLASSTLL 1020

Query: 812  SIFIAAPILLFIYDWR 827
            ++F+   +       +
Sbjct: 1021 TLFVLPALFEAFSRRK 1036


>gi|182679996|ref|YP_001834142.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Beijerinckia
           indica subsp. indica ATCC 9039]
 gi|182635879|gb|ACB96653.1| transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Beijerinckia indica subsp. indica ATCC 9039]
          Length = 1056

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/530 (12%), Positives = 158/530 (29%), Gaps = 41/530 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   G +      + +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITIAGAIS-----MTRIPVSQFPDIVPP-------------QVQVTARY 50

Query: 63  DDFVNGFLQ-MYSDELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                G ++   +  L + +     +         +    +T +F  S   +     V  
Sbjct: 51  PGASAGVVEASVAQPLEAQIVGVDKMLYMKSASGDDGSYTLTATFDLSSNPDIDTVNVNN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q     L  + ++  L         +       D      +  +       +D+I  +
Sbjct: 111 RVQTATPLLPPEVRQQGLTVQKRSSAVLQFMMLYSDNGAQDPLFITNYATINVLDEISRT 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q      +   +    D SRL  L    + +       N        G R + D  
Sbjct: 171 PGVGQASLFGNLKYSMRIWFDTSRLVSLNLAPSDVIAAISNQNVQAPIGRIGARPIADDQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q+ ++    +                 +    +                 +       
Sbjct: 231 QFQFNLQTLGRL-------------QTPEEFGAIVIRANPDGSVLRVRDVARVEMGAQSE 277

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                 +               +   T    G +   +         + V          
Sbjct: 278 DAEGRYSGKPAVGIGIYLSPGANAVQTAAAVGKVLERVGKRFPEGLKSTVVYDATTFVSD 337

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +   +  ++   +I +++I T A+L  LG +    S+
Sbjct: 338 TVREVLHTLIEAFVLVVLVVFLFLGSVRATVIPTIAIPVSLIGTFAILLALGFSANTVSL 397

Query: 418 AGIVLGIGLAVDSNILVNERIREEN--RKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
             +VL IG+ VD  I+V E +        + +   +     ++  + I    +  L   V
Sbjct: 398 LALVLAIGIVVDDAIVVVENVERVMEEEPDLTPAEATKKAMAQITAPIIAITLVLLSVFV 457

Query: 476 VLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            + F  G +    R FA+T+  ++LIS   A+++  A+   +++  + + 
Sbjct: 458 PIAFIPGTSGVLFRQFAVTISAAMLISALNALTLSPALCAIVLKRGRPRR 507



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/219 (10%), Positives = 73/219 (33%), Gaps = 9/219 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
               R     G   A       ++   T          +        +E    G  G I++
Sbjct: 817  NNYRAILINGSPAAGVSSGSALEAMGTLADQTLPPGFSFEWTGTAYQESQVSGQTGFILA 876

Query: 677  AIAMLIYIW---IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               +  Y++   +   W   +  + ++ + +        + G+  +L A   ++ LI  +
Sbjct: 877  FALLFAYLFLVGLYESWVIPVPVLLSVSVAVFGAFLGIIVAGVSLDLYAQIGLVVLIALA 936

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
              + +++ +  ++         +  +             + TS+A  + ++P+    G+ 
Sbjct: 937  AKNGILIVEFAKEQR---EHGATIIEAAALGAEMRFRAVMMTSLAFLLGLIPLIRATGAA 993

Query: 793  --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                 +   P+  G++ A++  +F+   + +       +
Sbjct: 994  QLSRRAVGTPVFAGMLAASTIGVFLIPMLYVVFQKMVER 1032



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 58/151 (38%), Gaps = 10/151 (6%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMR 745
                +     + + +  T       G   N  ++ A++  IG  V+D +VV    +R+ 
Sbjct: 363 SVRATVIPTIAIPVSLIGTFAILLALGFSANTVSLLALVLAIGIVVDDAIVVVENVERVM 422

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
           +        ++  +   K++ +     +  ++      +P+A   G+       FA+ ++
Sbjct: 423 EE----EPDLTPAEATKKAMAQITAPIIAITLVLLSVFVPIAFIPGTSGVLFRQFAVTIS 478

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++++A +++ ++  +   +         +
Sbjct: 479 AAMLISALNALTLSPALCAIVLKRGRPRRGL 509


>gi|59713628|ref|YP_206403.1| copper/silver efflux system, membrane component [Vibrio fischeri
           ES114]
 gi|59481876|gb|AAW87515.1| copper/silver efflux system, membrane component [Vibrio fischeri
           ES114]
          Length = 1039

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/650 (11%), Positives = 172/650 (26%), Gaps = 39/650 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV++ +    +  + ++ N    + +D  P       I                  
Sbjct: 11  KNRFLVLVATFALVVAGIYSVKN----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     E           ++   +   +
Sbjct: 118 APKLPAEAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   E DP +LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVEIDPDKLRAYNLTLQQVNKAIKEGNQETGASVIEVAEAEHMVRTSGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P         
Sbjct: 237 LSSVEDI------------------QSLPLKVTDKGTPLLLGDIADINLGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I       A L+ G                   +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIANVKEKLAQLQKGLPDGVEIKATYDRSTLIDHAVKNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WEKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   K    +++ +  +          +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIEKTPLTDKNRWQVIGKAAEEVGPPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AI++V  +M + +R K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTFAMAASAGLAITLVPVLMGYFVRGKILPEHKNPINKTLVSLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    +R     + ++++    +   +   G  +      G  + +    P       
Sbjct: 519 RPLLNVSLRFPKTMLLVAMVLMGSAYYPISKMGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             L       I            +       D    T +  +++ K  + 
Sbjct: 579 RELLQQTNKLIKTVPEVDTVWGKIGRAETATDPAPLTMIETVIQFKPKDE 628



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 86/237 (36%), Gaps = 3/237 (1%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++    ++ + +P         
Sbjct: 266 NLGPQMRRGISEFNGEGEAVGGVIVMRFGENASEVIANVKEKLAQLQKGLPDGVEIKATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    ++     +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDHAVKNLWEKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVY 774
           I  N+ ++  +   IG  V+  +V+ + + K+++    +   R  +I K+  E      +
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMIENVHKHIEKTPLTDKNRWQVIGKAAEEVGPPLFF 445

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + +   +S +P+    G     F+ P+AF    A ++S  +A  ++  +  +  +  
Sbjct: 446 SLLIITLSFVPVFALEGQEGKMFS-PLAFTKTFAMAASAGLAITLVPVLMGYFVRGK 501



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 73/261 (27%), Gaps = 20/261 (7%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   + L  V           I  +N        V +  +   S        + ++   
Sbjct: 784  SSGARIALGDVAEIRYEDGPPMIKTENARPNGWVFVDIDGRDLGSYVHEAQQAVHEQLDL 843

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                            +    L       V I+   +++ +++ F+  F    I    L 
Sbjct: 844  PAGYSLGWSGQYEYMERAKARLTT----VVPITIGIIMLLLYLSFR-RFGEVLIIMGTLP 898

Query: 704  ITKTLG--FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--------- 752
            +    G     L    F++      + L G +V   V++   + +               
Sbjct: 899  LAMVGGLWLMHLLNFNFSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHEKQITAQEQNNV 958

Query: 753  -TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
             T       I+      +   + T +   I ++P+      G  V+   A PM  G+  A
Sbjct: 959  LTQQDLTHAIEDGAGLRVRPVMMTVLTVIIGLIPIMYGSGTGSEVMQRIAAPMIGGMASA 1018

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
               ++ +   +       + K
Sbjct: 1019 LLLTLLVLPAVFKLWKQSQCK 1039


>gi|315452891|ref|YP_004073161.1| protein-export membrane protein SecD [Helicobacter felis ATCC
           49179]
 gi|315131943|emb|CBY82571.1| protein-export membrane protein SecD [Helicobacter felis ATCC
           49179]
          Length = 538

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 160/536 (29%), Positives = 263/536 (49%), Gaps = 35/536 (6%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            ++++ +    G+ ++LP+ L             +  +SL          +L V  ++ +
Sbjct: 5   RLLIFVIALVFGVGLSLPSLLQTKGPKITLGLDLRGGLSL----------LLGVQIEEAL 54

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
                  +  L   LK + I V  +R     +     D   +    DK+          L
Sbjct: 55  KNKYTSIATSLDYALKAQNILVKDLRSSLQGVEFDLLDP-DETKALDKI----------L 103

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
               K    V   ++  ++ LS           + Q +  IR R+DQ G++E T+ + G 
Sbjct: 104 EDFKKDGAQVEHAQEHYTLSLSFEKAQTFQQQTLLQVINTIRNRLDQFGLAEPTVLQQGK 163

Query: 187 HRILIQLPGEQ---DPSRLRQLLGTTAKMSFHKVL-----------PNNSKKGFMFGVRF 232
             IL+QLPG +   +  R + L+  +A +    V            P    K     + +
Sbjct: 164 DAILVQLPGIKTLAEEQRAKDLITKSAHLQMMAVDEEKNPYLAELSPEEIHKLGDVVLPY 223

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
              S G   L+   + I    +         K ++PVV  S D  GA+ F + + +N+GK
Sbjct: 224 APQSGGRGQLLLRAIPILDGEMLTDAQVAYDKNNQPVVSFSLDSRGAKIFGDFSGNNVGK 283

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            +AVVLD +V +AP I + I  G  QISG+F++E A  LA  LR+G L   ++++E+R +
Sbjct: 284 RMAVVLDNKVYSAPYIRERIGGGSGQISGSFSVEQASDLAITLRSGVLSAPISVLEKRII 343

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
           G  LG+DSI     A+    VL++ FMI  Y   G++A  ++ +N+ L +A+++L GATL
Sbjct: 344 GPSLGADSIRTSLIALAGAFVLVIAFMIFYYSMAGVIASVALVVNLFLIIAVMALFGATL 403

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           TLP +AGIVL +G+AVD+NI++NER+RE  R N+SV  +L  G++ A   IFDSN+T+LI
Sbjct: 404 TLPGMAGIVLTVGMAVDANIIINERVREGLRGNESVAQALRSGYANASRAIFDSNLTSLI 463

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           A+ +L+ +G G+++GFA+T G+ IL S+ TAI   +     I      K       
Sbjct: 464 ASFLLYAYGTGSIKGFALTTGIGILASILTAIIGTQGFYQAIAPKLSKKKGLYFWF 519



 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 70/156 (44%), Gaps = 4/156 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + IR  ++ +  + + ++ ++   +     + A   L++++   +   ALFG  
Sbjct: 344 GPSLGADSIRTSLIALAGAFVLVIAFMIFYYSM-AGVIASVALVVNLFLIIAVMALFGAT 402

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  +++ +R+R+ ++      S    +             +++
Sbjct: 403 LTLPGMAGIVLTVGMAVDANIIINERVREGLRGNE---SVAQALRSGYANASRAIFDSNL 459

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            + I+   +  +G   I  FA+    GI+ +  ++I
Sbjct: 460 TSLIASFLLYAYGTGSIKGFALTTGIGILASILTAI 495


>gi|312110105|ref|YP_003988421.1| acriflavin resistance protein [Geobacillus sp. Y4.1MC1]
 gi|311215206|gb|ADP73810.1| acriflavin resistance protein [Geobacillus sp. Y4.1MC1]
          Length = 1073

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 84/725 (11%), Positives = 193/725 (26%), Gaps = 77/725 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   GL   +   L        P                        
Sbjct: 10  LKNKFAVWLLTIIVMAAGLYSGMTMKLETIPNINTPVISVVTA--------------YPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   + +  ++    L    I   S  Q  + + +++   +  +    ++   L 
Sbjct: 56  ATPEEVANKVTIPIEKAVKNLNGVDIVTSSSFQNASSVQITYDYEKDMDEAKKELEEALT 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +      K  +   +   I ++    +I    +   + +  +  + +  +      
Sbjct: 116 LI--QFPEGVDKPKISKISFNSIPVM--ALSISDKKASLADLTKMVEDEIVPSLERINGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++    D  +L +L      +       + S    ++       S    
Sbjct: 172 SSVQISGQQIEEVQIALDDKKLAKLGLNKETVQNVIKGSDVSFPLGLYTFNNKEQSVVVD 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR------FFEVTRDNIGKPL 294
             +    ++  + +        P           D  G +              N G   
Sbjct: 232 GNITTLEDLKNLEIPIIPQASSPNNGMNANAGGPDLQGGQPAPDANHSAITPNHNAGNQT 291

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG------------------------- 329
               +     +            +I+    +E A                          
Sbjct: 292 IARNNQANGLSQQAQGLPTVKLGEIADIQVVEEAESISRTNGKEAIGLQIVKAADANTVT 351

Query: 330 -----ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
                       A  +     I           S           A    +++ + +   
Sbjct: 352 VVNEIKKELDKFADKIEGLEIITSFDMATPIEESIKTMVDKALFGALFAALIILLFLRNI 411

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR- 443
           +  L+A  SI L+V++ L +L  L  TL + ++  + + IG  +D +I+V E I      
Sbjct: 412 RSTLIAVISIPLSVLIALLVLKQLDITLNMMTLGAMTVAIGRVIDDSIVVIENIYRRLHL 471

Query: 444 --KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILI 498
             +       +       +  I  S I  ++  + L       G     FA+T+  ++L 
Sbjct: 472 KEEKLKGKQLIREATKEMFIPIMSSTIVTIVVFLPLGLVKGMVGELFLPFALTIVFALLA 531

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           S+  AI+IV  M   + + +     +        L      I         V   I   +
Sbjct: 532 SLLVAITIVPLMGHTLFQKELKGQSEHKKEKHGKLAEQYKKILNWSLNHKIVTSLIAVFL 591

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI------------ 606
               +     +          ++ V+  +P     +    E     +             
Sbjct: 592 LVASVFLVPVIGVSFLPADEEKMMVITYKPAPGETLEQVKEYTFAAEKYFLNKKNVKTVQ 651

Query: 607 -----SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                      G+ N  +       D+    +  E V K +   V     Q  +  G   
Sbjct: 652 LSIGSENPMNPGDTNSAMMFVAYDDDTPNFEKEKEQVIKDLQGKVKQGEWQQQDFSGNAG 711

Query: 662 SRELI 666
           S +L+
Sbjct: 712 SNQLV 716



 Score = 87.8 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 81/213 (38%), Gaps = 3/213 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            ++    ++V     ++    K  + +    I  +  +   I   +       +  +  A
Sbjct: 341 IVKAADANTVTVVNEIKKELDKFADKIEGLEIITSFDMATPIEESIKTMVDKALFGALFA 400

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            LI +         L A+ ++ L +   L       I  N+  + A+   IG  ++D +V
Sbjct: 401 ALIILLFLRNIRSTLIAVISIPLSVLIALLVLKQLDITLNMMTLGAMTVAIGRVIDDSIV 460

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
           V + + + + L    +  + LI ++  E     + +++   +  LP+ +     G +   
Sbjct: 461 VIENIYRRLHLKEEKLKGKQLIREATKEMFIPIMSSTIVTIVVFLPLGLVKGMVGELFLP 520

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           FA+ + F ++ +   +I I   +   ++    K
Sbjct: 521 FALTIVFALLASLLVAITIVPLMGHTLFQKELK 553



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 92/243 (37%), Gaps = 8/243 (3%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             V    L  ++ G  S      +      +  Q            + K+     +P +  
Sbjct: 829  EVPIKELVEVKKGKTSDTITHRDGKIYAEVSAQVKTKDVSKVAASLQKEVDKIKLPKNVE 888

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
             +T  V   I+    + G+  +I +   +   + + F         + +L   I   L  
Sbjct: 889  ISTGGVTEDITETFTQLGL-AMIAAVAIVYFVLVVTFGGALTPFVILFSLPFTIIGALLA 947

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + ++    L 
Sbjct: 948  LFITGETISVSAMIGALMLIGIVVTNAIVLIDRV---IHKEKEGLSTREALLEAGATRLR 1004

Query: 771  RSVYTSMAAFISVLPMAVW--GGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T++A   +++P+AV   G  +I    A+ +  G+  +   ++ I   +   +  +R
Sbjct: 1005 PILMTALATVGALIPLAVGMEGSGLISKGMAVTVMGGLTSSTLLTLLIVPIVYESLSRFR 1064

Query: 828  AKN 830
             K 
Sbjct: 1065 RKK 1067


>gi|198283661|ref|YP_002219982.1| acriflavin resistance protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218666930|ref|YP_002426292.1| transporter, AcrB/AcrD/AcrF family [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198248182|gb|ACH83775.1| acriflavin resistance protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218519143|gb|ACK79729.1| transporter, AcrB/AcrD/AcrF family [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 1026

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 56/461 (12%), Positives = 140/461 (30%), Gaps = 30/461 (6%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 + + GF+    + + +          +  +  + IT+    +   +     +  
Sbjct: 51  YPGANPNTIQGFITTRLERVIASAPGIDYMTSNSSEGMSTITVYMKLNYSPDAAVANIQS 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q V ++L    +  ++  T      ++      +Q+     + +  ++R    ++   
Sbjct: 111 KVQQVTNELPAGSQLPVINVTVGNTTDLMYIAFYSNQLNQQ--QITDYLLRVVQPKLAAV 168

Query: 178 ESTIQRLG-----SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
               Q         +     +    +P ++  L  + +++S      +            
Sbjct: 169 SGVGQAQILPPGSGNGNTYSMRVWLNPRKMAALGISASQVSQILAANDFISAVGSTRGTE 228

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
             D+      + D  +                      ++    +G           +  
Sbjct: 229 TGDTIVATTNLHDAAQF--------------------RNLVVKNVGNTIIRLKDIAQVEL 268

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                                      +            A L     P     +     
Sbjct: 269 GAQNYDSSAYFDGKPAAFVGIQEAPSANSLNVAAGVKAALAELGTALPPGMHMAIPYDAT 328

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S +    T  I   +V++V+F+ +   +  L+   +I L++I    ++  +G T+
Sbjct: 329 DYIKASINDVLITIGITLAVVVLVIFLFLGSFRSVLIPAVAIPLSIIGAGFIMWAMGFTI 388

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            L ++  IVL IGL VD  I+V E +     + +S   +  M      + I   + T + 
Sbjct: 389 NLLTLLAIVLAIGLVVDDAIIVVENVHRHIDEGKSPLQAALMTGRELGTAIVVMSTTLIA 448

Query: 473 ATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAM 510
               + F     G     FA T+  ++++SM  A+++   +
Sbjct: 449 VFAPIGFMSGLTGSLFSEFAFTLVATVVVSMVVALTLSPML 489



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 68/220 (30%), Gaps = 7/220 (3%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           N  + L  +       Q  D S         F+   +    +S+     ++    ++   
Sbjct: 255 NTIIRLKDIAQVELGAQNYDSSAYFDGKPAAFVGIQEAPSANSLNVAAGVKAALAELGTA 314

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
           +P               +  I   ++ + I+   +++ I++    +   L     + L I
Sbjct: 315 LPPGMHMAIPYDATDYIKASINDVLITIGITLAVVVLVIFLFLGSFRSVLIPAVAIPLSI 374

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
                     G   NL  + A++  IG  V+D ++V + +    +      S       +
Sbjct: 375 IGAGFIMWAMGFTINLLTLLAIVLAIGLVVDDAIIVVENVH---RHIDEGKSPLQAALMT 431

Query: 765 INETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
             E     V  S        P+       GS+   FA  +
Sbjct: 432 GRELGTAIVVMSTTLIAVFAPIGFMSGLTGSLFSEFAFTL 471


>gi|21231585|ref|NP_637502.1| transport protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66768293|ref|YP_243055.1| transport protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|21113273|gb|AAM41426.1| transport protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66573625|gb|AAY49035.1| transport protein [Xanthomonas campestris pv. campestris str. 8004]
          Length = 1028

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 88/646 (13%), Positives = 186/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATADGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +      D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AIRDDFPEDLQRFHIFKWSSSDEPVLKVRLASQADLTGAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S      N S           R      
Sbjct: 172 AKVEISGAPPNEVEIAIAPDRLTAHDLSLNDLSERLGKLNFSVSAGQIDDNGQRIRVQPV 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + D  E+  + L                        A+         +      +  G
Sbjct: 232 GELRDLQELRDLVL-----------------------NAKGLRLGDIAQVRLKPTRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +     + A      +RA      + +    N   A   S 
Sbjct: 269 RRLDGRPAIGLDIYKERSANLVEVSKAALKEVEDIRAEPAMRDVQVKVIDNQGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 AELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPGQPQLAALLGTRSVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     + S            
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPLVTSERGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G D      +            +
Sbjct: 509 AKVLAWTLAHRGWSVAGILLVSAISLVPMKLTKVDMFGGDGGNEGYIQYQWKGSYTREQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +                G +   T     VK 
Sbjct: 569 GDEIARVENHLEANRAKYHITQIYSWFSEVEGSNTVVTFDATKVKD 614



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 86/237 (36%), Gaps = 11/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLSTIQNTE 655
            +L  ++I   + Q     +   + ++   G  V        +++ +     P       +
Sbjct: 768  SLVDVKIRPAATQIGRTNRQTTLTIKANLGTKVTVPEARAAMEQPLKAMQFPAGYSYTFD 827

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E + + +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 828  GGDYQDDGEAMGQMVFNLVIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 887

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +     L    +     + +   E L   + 
Sbjct: 888  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN---NLRRRGMGRTQALIEGSRERLRPIMM 944

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T   A ++++P+          G      A  +A G+  +   S+     I   + D
Sbjct: 945  TMGTAILAMVPISLTSTTMFSDGPPYFPMARAIAGGLAFSTVVSLLFLPTIYAILDD 1001



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +    +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDIRAEPAMRDVQVKVIDNQGKAVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPGQPQLA-----ALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|329945617|ref|ZP_08293350.1| export membrane protein SecD [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328528620|gb|EGF55585.1| export membrane protein SecD [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 690

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 112/662 (16%), Positives = 219/662 (33%), Gaps = 108/662 (16%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DEDDFV 66
           ++ ++  IG   AL     +      P         L LDL GG+ ++L     D     
Sbjct: 1   MFILVIVIG-FGALVAGTMRHKASLTPG--------LALDLEGGTQIILTPTTSDGSAIS 51

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL----FLQGV 122
           +  ++   + +R  +   G+    + +   +  +     +  +   + V      + + V
Sbjct: 52  DNDVEQAIEVIRQRVDASGVSEAQISRQGGQNIVVSLPGKPSQATLELVRTSAVMYFRPV 111

Query: 123 NSKLNVDPKKN-----------LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
              L    ++                    + +              A + + +      
Sbjct: 112 LRILPGSAQQAAKNIASQNPSGEATQAPTDQPTAQAEAQPDPNAAQEATQPAEDAAGSEG 171

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQD------PSRLRQLLGTTAKMSFHKVLPNNSKKG 225
           +Q    E               P  Q       P  +   L    +       P  +   
Sbjct: 172 EQATGQEGQEGASAEQPAATPEPTAQPSTQARTPEEIATQLADVNQDGVISSDPLPATSQ 231

Query: 226 FMFGVRFL--------------------------------------RDSDGNQYLVEDKV 247
                 ++                                        S  +   +    
Sbjct: 232 DNSSDSWITEQLLYDGYMTDCSDPKNLTGQTQDPKVAVISCSKDKDAGSQQHGAYILGPA 291

Query: 248 EISGIHLNG-----ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +I+G  L        T +    T+K VV ++F+  G ++F E+++  +         G  
Sbjct: 292 DITGTELKSANSGLETDSRGQTTNKWVVSLAFNPDGTKKFSELSKRLLAYRDQAAAAGAQ 351

Query: 303 LTAPV----------------------------INQAIPSGKAQISGNFTIETAGILAAM 334
                                            ++  I  G+ QI+G+F    A  LA  
Sbjct: 352 GAQGAQNQDSQAKAQFAIVLDGLTIMASGFNSDVHSPITDGRVQITGSFNQNQANTLANQ 411

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           L  GSLP+   +  E+ + A LG++ +  G  A + G  LI+L++   Y    +VA  S+
Sbjct: 412 LSFGSLPLSFTVQSEQQISATLGTEQLRNGLIAGLIGFGLIILYLAWQYRGLAVVAVASL 471

Query: 395 FL----NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
            +      ++  AL SL+G  L+L  +AG+++ IG+ VDS I+  ER+R+E R+ +++  
Sbjct: 472 VVAAAGTYLVIAALSSLMGYRLSLAGVAGLIISIGITVDSFIIYFERVRDEVRQGRTLKT 531

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           ++D G+  A  TI  S+   L+A +VL+F   G V+GFA T+G++  + +   I      
Sbjct: 532 AIDEGWKHARRTILVSDAVNLVAAIVLYFLAVGGVQGFAFTLGVTTCVDLAIIIFFTHPF 591

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           M +I+ ++               +    +  + R R                       N
Sbjct: 592 MEWIVCFRFFGEGHRLSGLDPEHLGATASSTYGRGREAVADRVAGSLARRKAEARKAAEN 651

Query: 571 YG 572
             
Sbjct: 652 PD 653



 Score =  102 bits (252), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 73/205 (35%), Gaps = 6/205 (2%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
               G            +     +    T+Q+ + +   +  E +R G++  +I    ++
Sbjct: 394 VQITGSFNQNQANTLANQLSFGSLPLSFTVQSEQQISATLGTEQLRNGLIAGLIGFGLII 453

Query: 682 IYIWIRFK---WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           +Y+  +++          +              +L G   +L  VA ++  IG +V+  +
Sbjct: 454 LYLAWQYRGLAVVAVASLVVAAAGTYLVIAALSSLMGYRLSLAGVAGLIISIGITVDSFI 513

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
           + ++R+R  ++      + +  ID+         + +     ++ + +       +  FA
Sbjct: 514 IYFERVRDEVRQ---GRTLKTAIDEGWKHARRTILVSDAVNLVAAIVLYFLAVGGVQGFA 570

Query: 799 IPMAFGIVVAASSSIFIAAPILLFI 823
             +     V  +  IF   P + +I
Sbjct: 571 FTLGVTTCVDLAIIIFFTHPFMEWI 595


>gi|92119062|ref|YP_578791.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
 gi|91801956|gb|ABE64331.1| acriflavin resistance protein [Nitrobacter hamburgensis X14]
          Length = 1037

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/510 (12%), Positives = 136/510 (26%), Gaps = 38/510 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   GLL           +   P                          
Sbjct: 10  RPVATTLLMVAIMLSGLLA-----FRFLPVAALPEVDYPTIQ---------VQTFYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +              + ITL F  S   +    +V   +   
Sbjct: 56  PDVMTSSVTAPLEVQLGQMPNLNQMSSVSSAGASVITLQFGLSISLDVAEQEVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     +        + +L+   +        +       +   +I        
Sbjct: 116 GNLLPADLPAPPIYAKVNPADAPILT-LGLTSATMPLTQVEDFADTRLAQKISQLPGVGL 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    D  +L         +       N +     F       +      
Sbjct: 175 VSISGGQRPAVRVRADIRKLAAYGLNIDDLRTTLGNANINTPKGNFDGPMRAYTINANDQ 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +++  +                       +                ++         G  
Sbjct: 235 IKNAAD--------------------YKSLIVAYKNGSPVRLSDIGDVVDGAQNDKLGAW 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            +   +     +    L   L+A         V          S    
Sbjct: 275 MNKVPAVILNIQRQPGANVISVAQGVKDLLPQLQASLPTAINVAVLTDRTVTIRASVRDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++V+F+ +   +  L+   S+ L+++ TL  + L G +L   S+  + +
Sbjct: 335 EYELTLAVILVVLVIFVFLRSARATLIPSLSVPLSLVGTLGAMYLFGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     + ++   +   G  +   TI    ++ +   + L F G 
Sbjct: 395 ATGFVVDDAIVVIENISRYIEQGETPLQAALRGSEQIGFTIISLTVSLIAVLIPLLFMGD 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRA 509
             G   R FAIT+ ++ILIS   ++++V  
Sbjct: 455 VVGRLFREFAITLSVTILISGVVSLTLVPM 484



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    ++ L +  TLG   LFG   N  ++ A+    G+ V+D +VV + +    + 
Sbjct: 357 RATLIPSLSVPLSLVGTLGAMYLFGFSLNNLSLMALTIATGFVVDDAIVVIENI---SRY 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVV 807
                +      +   +     +  +++    ++P+   G   G +   FAI ++  I++
Sbjct: 414 IEQGETPLQAALRGSEQIGFTIISLTVSLIAVLIPLLFMGDVVGRLFREFAITLSVTILI 473

Query: 808 AASSSIFIAA 817
           +   S+ +  
Sbjct: 474 SGVVSLTLVP 483



 Score = 44.3 bits (102), Expect = 0.092,   Method: Composition-based stats.
 Identities = 32/238 (13%), Positives = 87/238 (36%), Gaps = 6/238 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L  ++      Q     +     + +      +    +  +K+   ++   +++ ++ 
Sbjct: 785  SVLAKIREETAPLQVSHLGQFPATTISFNLAPGASLGEAVSAIKQAQLDVGLPASVISSF 844

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                   +  +   I  +  + + + I + + ++ +   L  ++TL       L    L 
Sbjct: 845  QGAALAFQSSLSNQIFLIFAAIVTVYIVLGVLYESFIHPLTILSTLPSAGIGALLALMLA 904

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G +  + A+  ++ LIG    + +++ D               R+ I ++        + 
Sbjct: 905  GQDLTIVAIIGIILLIGIVKKNAIMMIDFALD--AERNEGRPPREAIYQACLLRFRPILM 962

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            T+MAA +  LP+ +    G  +     I +  G++V+   ++F    I L+      +
Sbjct: 963  TTMAAVLGALPLMLGTGAGSELRHPLGISIVGGLLVSQLLTLFTTPVIYLWFDRLSLR 1020


>gi|83312533|ref|YP_422797.1| cation/multidrug efflux pump [Magnetospirillum magneticum AMB-1]
 gi|82947374|dbj|BAE52238.1| Cation/multidrug efflux pump [Magnetospirillum magneticum AMB-1]
          Length = 943

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/583 (11%), Positives = 164/583 (28%), Gaps = 25/583 (4%)

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              +  Q  + +TL F  S+  +  +++V   +      L        + +        +
Sbjct: 1   MTSTSSQGTSALTLQFDLSKSIDVASEEVQAAIDAARGVLPTQLPYPPVYSKVNPADPPI 60

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           ++   +          +         ++       + L        +    DP+RL    
Sbjct: 61  MT-LALTSDSLPITRLNDVADTLLAQKLSQIGGVGRVLIEGGQRPAVRVRMDPARLAAYG 119

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   +       N       F       S G    + D +                   
Sbjct: 120 LSLEDVRSALSKANVDMPKGSFDGVAQALSIGANDQISDPL------------------- 160

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                                 ++ + +                     +   +   T++
Sbjct: 161 -AYPAQVVAWKNGAPVRVSDLGDVVEGVENSRVAGWFDGKPAVILNIQRQPGANIVATVD 219

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L           V          S +  + T  +   LV+ V++  +   + 
Sbjct: 220 RLQAKLPELTRVVPTGVKVSVLADRTETIRASVADVEFTLVLTIILVIGVIWAFLRSVRA 279

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ L++I T  +++L G +L   S+  + +  G  VD  I++ E I     K  
Sbjct: 280 TLIPAVALPLSLIGTFGVMALAGFSLDNLSLMALTISAGFVVDDAIVMIENIVRYIEKGM 339

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
               +   G      TI    ++ +   + L F     G   R FA+T+ +++++S   +
Sbjct: 340 KPLDAALAGSKEIGFTIVSLTVSLVAVFIPLLFMTGIVGRLFREFALTLAVAVVVSAVVS 399

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +++   M   +++    ++                    +  +   + ++      +I L
Sbjct: 400 LTLTPMMCAHLLKGGHEEAKSGRFFLALSRAYARSLDWVLGHQAATLWVAFATLALTIGL 459

Query: 564 LFTHGLNY-GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                  +      G I     A   V  S +      +     +  +     +F+    
Sbjct: 460 YVFMPKGFLPTQDTGLIVATTDARADVSFSTMMDMQRRVSELARTDADVTAVASFIGAGP 519

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
             P  +  Q  ++   +K+ +        +  E V P    E+
Sbjct: 520 INPTANTGQMTIVLKPRKQRSASAEQIIARLAEKVSPVAGMEV 562



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 79/239 (33%), Gaps = 10/239 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  I         V+A +      V    + ++  + S      +    V L  Q     
Sbjct: 153 NDQISDPLAYPAQVVAWKNGAPVRVSDLGDVVEGVENSRVAGWFDGKPAVILNIQRQPGA 212

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIW- 685
                ++ ++ K+ E+  +        V    +  +          ++++ I ++  IW 
Sbjct: 213 NIVATVDRLQAKLPELTRVVPTGVKVSVLADRTETIRASVADVEFTLVLTIILVIGVIWA 272

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L     L L +  T G  AL G   +  ++ A+    G+ V+D +V+ + + 
Sbjct: 273 FLRSVRATLIPAVALPLSLIGTFGVMALAGFSLDNLSLMALTISAGFVVDDAIVMIENI- 331

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPM 801
             ++     +   D       E     V  +++     +P+    G V      FA+ +
Sbjct: 332 --VRYIEKGMKPLDAALAGSKEIGFTIVSLTVSLVAVFIPLLFMTGIVGRLFREFALTL 388



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/220 (13%), Positives = 80/220 (36%), Gaps = 6/220 (2%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +   V + +      +       +     E+    TI           R  +      +
Sbjct: 717 GQFPAVTISFNLASGASLGAATAAIDALQHEMGMPETITGEYSGDAAEFRRALDSQPWLI 776

Query: 674 IISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + + + + I + + ++     +  ++TL       L    + G + +L  +  ++ L+G 
Sbjct: 777 VAAMVVIYIVLGVLYESTIHPVTIMSTLPSAGIGALLALLVTGHDLSLVGLIGIVLLMGI 836

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
              + +++ D   +        ++ RD I K+        + T+MAA +  +P+A+    
Sbjct: 837 VKKNAIMMIDFAIE--AERHEGLNPRDAIVKASLLRFRPIMMTTMAALLGAIPLAIDAGT 894

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           G  +     I +  G+V++   +++    I L     + +
Sbjct: 895 GSELRRPLGISIVGGLVLSQLITLYTTPVIYLAFERLKRR 934


>gi|317051037|ref|YP_004112153.1| acriflavin resistance protein [Desulfurispirillum indicum S5]
 gi|316946121|gb|ADU65597.1| acriflavin resistance protein [Desulfurispirillum indicum S5]
          Length = 1036

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/594 (11%), Positives = 163/594 (27%), Gaps = 46/594 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++   +I   GL+         +     P                          
Sbjct: 10  KPVTVIVGVILILLFGLISLGNMPYQLTPEVSEPEIT--------------VRTTWPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        S R     ITL F      +     V+  L  V
Sbjct: 56  PYEIERDVVEVQENYLKSIPNLVEYESSSRNNMGTITLRFKIGTPMDRALLDVSNKLGEV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS-MEIIRQRIDQIGISESTI 181
            S      ++  +  + +    +V       +   + I+        +    I   +   
Sbjct: 116 RSY-PEGVERPSVNASGDTSSPVVWMMMQARENNPNHIDTYRNFFENEVRQHIERVDGVS 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    +++    DP R+     T  ++       N +       +           
Sbjct: 175 DLFFGGGRNLEMHILLDPERMAAFGLTYDEIISVVQRENINISAGQMDMGRRSYRIRTVA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   EI  I +     +         VD ++    A                      
Sbjct: 235 EFESPQEIRDIIIRSDGQHRLRLGDVGEVDFAYARKTASIML------------------ 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +    ++          +          +                      G  +G+  +
Sbjct: 277 MGEPGMVVGVRAESGTNVVELTNTLEEVVNRLNDELLHPRDLHLRWVRDQRGYIMGAVKL 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   L +++L   +       +   +I +++I T  +++ LG +L + S+AGI 
Sbjct: 337 VQQNILIGGVLAIVILVSFLRSASSTGIVAVAIPISIIGTFIIMNALGRSLNIVSLAGIS 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
             +G+ VDS I+V E I    +  +S F S   G    +  I  S++T +   + + F  
Sbjct: 397 FAVGMLVDSAIVVLENIDRHRKLGKSTFHSCYDGTREVWGAIIASSLTTIAVFLPIVFLE 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY---------KKMKSIDINPLS 529
              G   R  A+ +  ++  S+F +IS++  +   I R           +  S+    ++
Sbjct: 457 GEAGQLFRDIALAVTSAVTFSLFVSISVIPMLSAQIFRRSGGSTTAPGPERPSVRAGHMA 516

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
              ++                   ++     +  +    + Y         + +
Sbjct: 517 VDLIMMVVERASRTVTSRIATVAGLVVFSIGVAWVLFPKMEYLPHGNQNFVVNI 570



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/204 (12%), Positives = 68/204 (33%), Gaps = 9/204 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           +     V+  +  ++     L      +  G  +    + +  + +      +++  ++R
Sbjct: 298 TNTLEEVVNRLNDELLHPRDLHLRWVRDQRGYIMGAVKLVQQNILIGGVLAIVILVSFLR 357

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A+  + + I  T       G   N+ ++A +   +G  V+  +VV     +N
Sbjct: 358 SASSTGIVAV-AIPISIIGTFIIMNALGRSLNIVSLAGISFAVGMLVDSAIVVL----EN 412

Query: 748 MKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
           +  +     S          E  G  + +S+      LP+       G +    A+ +  
Sbjct: 413 IDRHRKLGKSTFHSCYDGTREVWGAIIASSLTTIAVFLPIVFLEGEAGQLFRDIALAVTS 472

Query: 804 GIVVAASSSIFIAAPILLFIYDWR 827
            +  +   SI +   +   I+   
Sbjct: 473 AVTFSLFVSISVIPMLSAQIFRRS 496



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 94/274 (34%), Gaps = 20/274 (7%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
              +     Q+     + V LS +    +   I +I            V          A 
Sbjct: 769  SPEDLFRTQIAAPGGQLVPLSNLVRMEQRYGITEIRHYEGRRTITLQVTPPDHITIQEAM 828

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI---WIRF 688
              V E +   + +   +      ++ G    + L    ++ +     + +IY+    +  
Sbjct: 829  EIVQERIVPSLKQEGKIPPQIQVQLSG-TADKLLETVALLAMNFVLASAIIYLLMSALFG 887

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIE--------FNLTAVAAVLTLIGYSVNDKVVV 740
             + + L  + T+ L    T G FA   +          ++  +   + LIG  VN+ +++
Sbjct: 888  NFVYPLVVMFTVPL---ATAGGFAGLRLTNALIAPQALDILTMLGFIILIGVVVNNAILI 944

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
              +   N++ +  S+     +  +    L     +++ +   +LP+ V    G  +    
Sbjct: 945  VHQTLNNIRYH--SMEMAGAVLDATRNRLRPIFMSTLTSIFGMLPLVVAPGPGSELYRGL 1002

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               +  G+ ++   +I +   +L+F+       A
Sbjct: 1003 GSVIVGGMALSTVFTILVIPCLLMFVLKGEKPRA 1036


>gi|86604804|ref|YP_473567.1| preprotein translocase subunit SecD [Synechococcus sp. JA-3-3Ab]
 gi|86553346|gb|ABC98304.1| protein-export membrane protein SecD [Synechococcus sp. JA-3-3Ab]
          Length = 448

 Score =  135 bits (338), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 39/224 (17%), Positives = 88/224 (39%), Gaps = 4/224 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+ + I                      G+   +T     VK K   +     +     V
Sbjct: 206 LDDVLISAPIVGPEFARTGITGGTAVITGNFTVETATDLAVKLKAGALPVPIRVIENRTV 265

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  +  E +R+ +   I   + + +++   ++    L A   L++    T   F L G+ 
Sbjct: 266 GATLGEESVRRSLYAGIAGLVLVFVFMVAYYRLP-GLVADIALLIYALCTFALFQLLGVT 324

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R+++ ++      S    I +  N      + +++
Sbjct: 325 MTLPGIAGFILSIGMAVDANVLIFERIKEELRA---GKSIYKSISEGFNRAFSSILDSNV 381

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
              +    +   G  ++  FA+ +A GI+V+  ++I     +LL
Sbjct: 382 TTLLVCGVLFWLGMGLVKGFAVTLAIGILVSFFTAITCTRTLLL 425



 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 138/420 (32%), Positives = 227/420 (54%), Gaps = 10/420 (2%)

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  V    + + +  L +    +     L    + ++ S  ++    +I+QRID +G++E
Sbjct: 26  VALVYLGFSREVRLGLDLKGGTQLTLQALPTEEVPEITSEVMQGVEAVIQQRIDGLGVAE 85

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
             +Q  G  R+ +QLPG  DP R   LLG TA++ F                R    +  
Sbjct: 86  PLVQISGQDRLFVQLPGVADPDRAIALLGDTARLEFR--KGLVPVSALPRNERGEITAGE 143

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHK-PVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           +   + ++V ++G  L  A      +  +   V + F   GA +F ++TR+  G    + 
Sbjct: 144 DPDALFERVGLTGDLLRNAYPQAPRRGSQTWEVLLEFKPAGAEKFTQLTRELAGTGRPIG 203

Query: 298 L-------DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           +          ++        I  G A I+GNFT+ETA  LA  L+AG+LP+ + ++E R
Sbjct: 204 IFLDDVLISAPIVGPEFARTGITGGTAVITGNFTVETATDLAVKLKAGALPVPIRVIENR 263

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VGA LG +S+ +   A +AGLVL+ +FM+  Y   GLVAD ++ +  + T AL  LLG 
Sbjct: 264 TVGATLGEESVRRSLYAGIAGLVLVFVFMVAYYRLPGLVADIALLIYALCTFALFQLLGV 323

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           T+TLP IAG +L IG+AVD+N+L+ ERI+EE R  +S++ S+  GF+RA+S+I DSN+T 
Sbjct: 324 TMTLPGIAGFILSIGMAVDANVLIFERIKEELRAGKSIYKSISEGFNRAFSSILDSNVTT 383

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           L+   VLF+ G G V+GFA+T+ + IL+S FTAI+  R +++  +    ++  +   +  
Sbjct: 384 LLVCGVLFWLGMGLVKGFAVTLAIGILVSFFTAITCTRTLLLAAMGIPALRKPEFYGVRM 443



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 24/263 (9%), Positives = 71/263 (26%), Gaps = 36/263 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R      +++ +   + L+    +                  + LGLDL+GG+ L L+  
Sbjct: 11  RLAVLRGLIFILAVVVALVYLGFS----------------REVRLGLDLKGGTQLTLQAL 54

Query: 61  ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116
              +  +  +  +Q     ++  +   G+    ++   Q+++ +        +     + 
Sbjct: 55  PTEEVPEITSEVMQGVEAVIQQRIDGLGVAEPLVQISGQDRLFVQLPGVADPDRAIALLG 114

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
              +    K  V           E      ++       +   +  + +++R    Q   
Sbjct: 115 DTARLEFRKGLVPVSALPRNERGE------ITAGEDPDALFERVGLTGDLLRNAYPQAPR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                          ++  E  P+   +    T +++             +     +   
Sbjct: 169 ---------RGSQTWEVLLEFKPAGAEKFTQLTRELAGTGRPIGIFLDDVLISAPIVGPE 219

Query: 237 DGNQYLVEDKVEISGIHLNGATA 259
                +      I+G        
Sbjct: 220 FARTGITGGTAVITGNFTVETAT 242


>gi|260752744|ref|YP_003225637.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258552107|gb|ACV75053.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 1083

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 70/603 (11%), Positives = 165/603 (27%), Gaps = 47/603 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI  +G+L A      ++  D FP                   ++ + 
Sbjct: 9   LRRPYTFIVMAVMIFIVGILSAF-----KTPTDIFPDIKIPI-----------VAVIWQF 52

Query: 61  DE--DDFVNGFLQMYSDELRSFL-KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                D +   +        + +                 + + F           ++T 
Sbjct: 53  QGMSPDDIQSRINTPYQRAMTTVVNNIDHLEAMSIANFGIVKIFFQPGTDIRLANAQITA 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q V   L       L++  +   + I+    +   +     + +          +   
Sbjct: 113 SAQTVLRSLPRGINPPLILNYSASTVPILQLSVHGKGLTEQ--QLNDLSFNAVRAGLITV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
             +         + Q+  + DP  L+    T   +S                +   + + 
Sbjct: 171 PGSAIPYPWGGRVRQIQFDVDPHALQSKGLTAQDISNTIAQQTQITPAGFAKIGPYQYNI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               +     ++                      +    +     +     ++    A  
Sbjct: 231 RLNNVPGSTEQL--------------------NHLPIKTVNGATVYVSDVAHVRDGAAPQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S              L  G                   
Sbjct: 271 TNVVHVDGARSVLLTVYKNGSASTVSVAAGILAKIPSLLVGLPSTLRVDALTNQAIFVQE 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S      AI A L  +++ + +   +  ++   SI L ++  L LLS  G TL + ++
Sbjct: 331 AISGVAREAAIAAVLTSLMIMLFLGSWRSTVIIAISIPLAIMSALGLLSAFGQTLNIMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I       + V  ++  G  +  +    S +   IA V +
Sbjct: 391 GGLALAVGILVDDGTVTIENINWHLEHGKDVIPAIIDGAMQIATPALVSTLCICIAFVPM 450

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS---RF 531
           FF  G          +++  ++L S   + ++V  + +++++    K    + +     F
Sbjct: 451 FFLPGIAGFLFAPMGMSVIFAMLASFLLSRTLVPTLAMYLLKPIPHKHDSEHAVKSSNIF 510

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                     F + R   V +           +        + F     LG      +D 
Sbjct: 511 VRFQQGFEHHFEKMRLGYVHLLEKALRAKWLFIVAFYGFVILSFTLSPFLGRNFFPSIDT 570

Query: 592 SVV 594
             +
Sbjct: 571 GSI 573



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 72/250 (28%), Gaps = 6/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V         V      +    ++   +        V              +L  +   
Sbjct: 249 TVNGATVYVSDVAHVRDGAAPQTNVVHVDGARSVLLTVYKNGSASTVSVAAGILAKIPSL 308

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +  +     +         +   +        I + +  L+ +     W   +    ++ 
Sbjct: 309 LVGLPSTLRVDALTNQAIFVQEAISGVAREAAIAAVLTSLMIMLFLGSWRSTVIIAISIP 368

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L I   LG  + FG   N+  +  +   +G  V+D  V  + +                I
Sbjct: 369 LAIMSALGLLSAFGQTLNIMTLGGLALAVGILVDDGTVTIENIN---WHLEHGKDVIPAI 425

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP-MAFGIVVAASSSIFIAAPIL 820
                +    ++ +++   I+ +PM    G  I  F    M   ++ A  +S  ++  ++
Sbjct: 426 IDGAMQIATPALVSTLCICIAFVPMFFLPG--IAGFLFAPMGMSVIFAMLASFLLSRTLV 483

Query: 821 LFIYDWRAKN 830
             +  +  K 
Sbjct: 484 PTLAMYLLKP 493



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            +    Q  D  A +  +  V  K+ +  P             ++      G  G++ + +
Sbjct: 841  IYGSIQGRDLGAVSNDILKVIHKMEKQKPKGVTVTLRGQYQTMNTAFQGMGF-GLLGAIV 899

Query: 679  AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + I I F  W      I  L   +   +    +     ++ A+   +  +G + ++ 
Sbjct: 900  LIYLLIVINFQSWLDPFIVIAALPGALAGIIWMLFVTKTTLSVPALTGAIMCMGVATSNS 959

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            V+V    R+         +      ++    L   + T++A  I +LPMA+    GG   
Sbjct: 960  VLVISFCRE---KMEEGFTSAQAALEAGATRLRPVLMTALAMIIGMLPMALGLGDGGEQN 1016

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                  +  G++VA ++S+F    +   ++    K 
Sbjct: 1017 APLGRAVVGGLIVATTASLFFVPSLFSLMHRNDPKK 1052


>gi|289641358|ref|ZP_06473523.1| protein-export membrane protein SecD [Frankia symbiont of Datisca
           glomerata]
 gi|289508820|gb|EFD29754.1| protein-export membrane protein SecD [Frankia symbiont of Datisca
           glomerata]
          Length = 657

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 133/563 (23%), Positives = 223/563 (39%), Gaps = 59/563 (10%)

Query: 17  IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD----EDDFVNGFLQM 72
           IGLL  +   L  S +    +  P     LGLDL+GG+ ++L             G +  
Sbjct: 25  IGLLFGIVVLLYGS-MALTSTWTP----KLGLDLQGGTSVILTPRSTEPGKGVDGGAVNK 79

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFAD---SRFKENIADKVTLFLQGV------- 122
             D +R  +   G+    +++   +I +S      +   E +     L  + V       
Sbjct: 80  AVDIIRERVNGLGVAEAEVKRNNTQIEISVPGRGRNDVVELVGQTAELRFREVYTSGAAV 139

Query: 123 -------------------NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH-AIEQ 162
                                     P+    V+      +   S      V+    + Q
Sbjct: 140 PAAPTTPPAAPEAPTATPTVPVPGATPRAPGTVSAPPAATAASPSTTTRPDVVGSGLLAQ 199

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK------ 216
           +             + S    LG+    +       P++          ++  +      
Sbjct: 200 AAPTAPAGSAAPAPAASASPALGTPPAAVPPAASGQPAQPAADTPPADVVARFESLTCAP 259

Query: 217 --VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA-------NFDPKTHK 267
             V    +            D  G    +     + G  +  ATA            T +
Sbjct: 260 SDVRSQAAATDRPTDWVAACDRSGAVKYLLMPATVIGTDVKSATAGLASSGGAASVSTGE 319

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
            VV++SF   G  +F  +T   +GK +A+VLDG V +AP  N  I    AQISG+FT  +
Sbjct: 320 WVVNVSFTGTGQAKFTSLTEKTLGKQVAIVLDGVVQSAPTTNDRIAGD-AQISGSFTQSS 378

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  LA +LR G+LP+        ++   LG DS+  G  A V GL L+ L+  V Y   G
Sbjct: 379 AQDLANVLRYGALPLAFEQSSAESISPTLGQDSLNAGLLAGVIGLALVTLYSFVYYRTLG 438

Query: 388 LVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
           +V   S+ ++ +L  A + LL    G TLTL  IAG++L IG+  DS ++  ERI++E R
Sbjct: 439 IVVLSSLAVSGVLVYASVVLLGEWIGFTLTLAGIAGLILSIGVTADSFVVYFERIKDEVR 498

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
           +N++   + +  +  A  T+  ++  + +A  VL+    G+VRGFA T+GLS LI +   
Sbjct: 499 ENRTARVATERAWPSARRTMLSADTVSFLAAAVLYVLSVGSVRGFAFTLGLSTLIDVLIM 558

Query: 504 ISIVRAMMIFIIRYKKMKSIDIN 526
               R ++  ++R     +   +
Sbjct: 559 FIFTRPVVTLLVRRPFFATSRFS 581



 Score =  100 bits (247), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 29/260 (11%), Positives = 86/260 (33%), Gaps = 13/260 (5%)

Query: 576 KGGIQLGVLAN-----RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
            G   + V        +   L+      +   + D   Q+     + +       G    
Sbjct: 317 TGEWVVNVSFTGTGQAKFTSLTEKTLGKQVAIVLDGVVQSAPTTNDRIAGDAQISGSFTQ 376

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
            +        +   +       + E + P + ++ +  G++  +I    + +Y ++ ++ 
Sbjct: 377 SSAQDLANVLRYGALPLAFEQSSAESISPTLGQDSLNAGLLAGVIGLALVTLYSFVYYR- 435

Query: 691 YFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +  +++L +          L G        L  +A ++  IG + +  VV ++R++ 
Sbjct: 436 TLGIVVLSSLAVSGVLVYASVVLLGEWIGFTLTLAGIAGLILSIGVTADSFVVYFERIKD 495

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++   T+    +    S   T+   +     +F++   + V     +  FA  +    +
Sbjct: 496 EVRENRTARVATERAWPSARRTM---LSADTVSFLAAAVLYVLSVGSVRGFAFTLGLSTL 552

Query: 807 VAASSSIFIAAPILLFIYDW 826
           +          P++  +   
Sbjct: 553 IDVLIMFIFTRPVVTLLVRR 572


>gi|188991431|ref|YP_001903441.1| RND superfamily multidrug resistance protein [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167733191|emb|CAP51389.1| RND superfamily multidrug resistance protein [Xanthomonas
           campestris pv. campestris]
          Length = 1028

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 88/646 (13%), Positives = 186/646 (28%), Gaps = 47/646 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++ +  +  +GL+ A      +  L+  P                   L     
Sbjct: 9   RRPVTTIMCFVSLVVVGLIAAF-----RLPLEALPDISAPFLF---------VQLPYTGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             D V   L   ++E  + +        +       I + F+D  R     A      L 
Sbjct: 55  TPDEVERNLVRPAEEALATMTGIKRMRSTATADGANIFIEFSDWDRDIAIAASDARERLD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +      D ++  +   +  +  ++  +      ++ A +      R+   +I      
Sbjct: 115 AIRDDFPEDLQRFHIFKWSSSDEPVLKVRLASQADLTGAYDMLD---REFKRRIERIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S     ++     P RL     +   +S      N S           R      
Sbjct: 172 AKVEISGAPPNEVEIAIAPDRLTAHDLSLNDLSERLGKLNFSVSAGQIDDNGQRIRVQPV 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + D  E+  + L                        A+         +      +  G
Sbjct: 232 GELRDLQELRDLVL-----------------------NAKGLRLGDIAQVRLKPTRMNYG 268

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLGSD 359
           R L            +   +     + A      +RA      + +    N   A   S 
Sbjct: 269 RRLDGRPAIGLDIYKERSANLVEVSKAALKEVEDIRAEPAMRDVQVKVIDNQGKAVTSSL 328

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +      A+   L + VLF  + +    L+   +I +   +TL  +  +G TL + ++ G
Sbjct: 329 AELAEAGAVGLLLSITVLFFFLRHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMG 388

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD+ ++V E I +E  +       +  +G       +    +   I  V   
Sbjct: 389 LLLAVGMLVDNAVVVVESIYQERERMPGQPQLAALLGTRSVAIALSAGTLCHCIVFVPNL 448

Query: 479 FFGGG----AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F         +   AIT+ +S+L S   AIS++  +   +     + S            
Sbjct: 449 FGETNNISIFMAQIAITISVSLLASWLVAISLIPMLSARMKTPPLVTSERGVIARLQRRY 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +A       +   GI ++ +I  + +  T    +G D      +            +
Sbjct: 509 AKVLAWTLAHRGWSVAGILLVSAISLVPMKLTKVDMFGGDGGNEGYIQYQWKGSYTREQL 568

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  ++    + +                G +   T     VK 
Sbjct: 569 GDEIARVENHLEANRARYHITQIYSWFSEVEGSNTVVTFDATKVKD 614



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 86/237 (36%), Gaps = 11/237 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLSTIQNTE 655
            +L  ++I   + Q     +   + ++   G  V        +++ +     P       +
Sbjct: 768  SLVDVKIRPAATQIGRTNRQTTLTIKANLGTKVTVPEARAAMEQPLKAMQFPAGYSYTFD 827

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   E + + +  ++I+ + + + +   F+   F    ++ ++  I      F + 
Sbjct: 828  GGDYQDDGEAMGQMVFNLVIALVMIYVVMAAVFESLLFPAAIMSGVLFSIFGVFWLFWIT 887

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G  F + +   +L L+G  VN+ +V+ + +     L    +     + +   E L   + 
Sbjct: 888  GTSFGIMSFIGILVLMGVVVNNGIVMIEHIN---NLRRRGMGRTQALIEGSRERLRPIMM 944

Query: 775  TSMAAFISVLPM------AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T   A ++++P+          G      A  +A G+  +   S+     I   + D
Sbjct: 945  TMGTAILAMVPISLTSTTMFSDGPPYFPMARAIAGGLAFSTVVSLLFLPTIYAILDD 1001



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 8/204 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V++  + E+   +    +    ++  +  G  ++  L      G +   +++ +  +  
Sbjct: 291 EVSKAALKEVEDIRAEPAMRDVQVKVIDNQGKAVTSSLAELAEAGAVGLLLSITVLFFFL 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L     + +    TLGF    G+  N+  +  +L  +G  V++ VVV + + + 
Sbjct: 351 RHWPSTLMVTLAIPICFAITLGFMYFVGVTLNILTMMGLLLAVGMLVDNAVVVVESIYQE 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAF---ISVLPMAVWGGSVIGSFAIPMAFG 804
            +              ++  T   ++  S       I  +P      + I  F   +A  
Sbjct: 411 RERMPGQPQLA-----ALLGTRSVAIALSAGTLCHCIVFVPNLFGETNNISIFMAQIAIT 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           I V+  +S  +A  ++  +     
Sbjct: 466 ISVSLLASWLVAISLIPMLSARMK 489


>gi|30249976|ref|NP_842046.1| acriflavin resistance protein [Nitrosomonas europaea ATCC 19718]
 gi|30139083|emb|CAD85947.1| Acriflavin resistance protein [Nitrosomonas europaea ATCC 19718]
          Length = 1028

 Score =  134 bits (337), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 65/612 (10%), Positives = 169/612 (27%), Gaps = 52/612 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +    ++  ++  +G++        +  +DR+P                     L   
Sbjct: 9   KRHVLAWMVSGLLVLLGVIS-----YQRIGVDRWPYIEFPMI---------SVTTTLIGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V+  +    +   + +        S     +  T++F+  +  +   ++V   +  
Sbjct: 55  NPDIVDASITSIIETAINTIPGIEHVQSSSSPSVSVTTITFSLDKNIDVAYNEVQANISQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D    ++         ++       Q      + ++        ++   +   
Sbjct: 115 VLRRLPDDTDPPVVRKIETNAQPVMWLSL---QGDRTLQQLNLYGFNVIKKKLETIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    +     P R+       + +       +    G                
Sbjct: 172 EVRLGGRRDRTIRVNILPERMASYNLAASDVISAFRREHIQLPGGFL------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +          + +    K + ++                 I   LA      
Sbjct: 219 -------VGRNTERLIKLDLEFHNLKDMSNLIVAYRDGAPIRLKEIAEIEDELADYRQVA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +  +    IE     L   +     P     V   +        +
Sbjct: 272 RFNGQPSLGVGIVKVSNANTVAIIEEVERRLKEDIVPSLPPGMRIGVSTSDAIFIKELVN 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +        L  +++++ +   +  L+   +I ++++  +A++   G T    ++  +
Sbjct: 332 SLQEHLIEGTLLAALIVWLFLRSVRSTLIIATAIPVSLLGAVAVMYFSGFTFNTMTLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-------SVFCSLDMGFSRAYSTIFDSNITALIA 473
           +L IG+ VD  I+V E I     ++Q       +   S+       ++ I  +     I 
Sbjct: 392 LLLIGVVVDDAIVVLESIFRHMSRDQARYGKVDTAAASVRGSHEVVFAVIAATLSLVCIF 451

Query: 474 TVVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
             V+F  G  G   + FA+ +   +LIS+  ++++   +    +R  +      + L   
Sbjct: 452 APVIFMDGIIGKFFKSFAVVVTFGVLISLLVSLTLTPMLCSRYLRVDRKHGRLYHWLDNG 511

Query: 532 FLIPDCIA-----IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           F   D I                +  ++     S               +G   +     
Sbjct: 512 FNRMDRIYGSLLEFSIQHRWKVILITTLTVLSSSFFFGKVEKELSPEADEGVFMITFRTP 571

Query: 587 RPVDLSVVRSNL 598
               +    S L
Sbjct: 572 LGSSIDYTDSRL 583



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 89/251 (35%), Gaps = 11/251 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           ++   E         Q         + +      +     ++E V++++ E +  S    
Sbjct: 254 LKEIAEIEDELADYRQVARFNGQPSLGVGIVKVSNANTVAIIEEVERRLKEDIVPSLPPG 313

Query: 654 TEIVGPKISRELIRKGIVGVI-----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
             I         I++ +  +       + +A LI           L   T + + +   +
Sbjct: 314 MRIGVSTSDAIFIKELVNSLQEHLIEGTLLAALIVWLFLRSVRSTLIIATAIPVSLLGAV 373

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN-- 766
                 G  FN   + A+L LIG  V+D +VV + + ++M          D    S+   
Sbjct: 374 AVMYFSGFTFNTMTLLALLLLIGVVVDDAIVVLESIFRHMSRDQARYGKVDTAAASVRGS 433

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPILLF 822
             +  +V  +  + + +    ++   +I     SFA+ + FG++++   S+ +   +   
Sbjct: 434 HEVVFAVIAATLSLVCIFAPVIFMDGIIGKFFKSFAVVVTFGVLISLLVSLTLTPMLCSR 493

Query: 823 IYDWRAKNARI 833
                 K+ R+
Sbjct: 494 YLRVDRKHGRL 504



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 71/197 (36%), Gaps = 9/197 (4%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-Y 691
             +         +      +  T  +  +             I +   +L+Y+ +  ++  
Sbjct: 819  SLGNATDMVFQQAAEFMPVGYTVKMTGQAEELAKTMTNTLFIFTLALILLYMVLASQFNS 878

Query: 692  FALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            F    I  +   +    G FAL   G   N+ ++  ++ LIG    + +++ D      +
Sbjct: 879  FLQPLIVMVAQPLAIIGGIFALWLTGNSLNIFSMIGLVLLIGLVAKNSILLID---LTNQ 935

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
            L     S  D + ++    L   + TS+   +++LP A+    G       +I +  G++
Sbjct: 936  LREQGKSVDDALREACPVRLRPVLMTSLTVILALLPAAMGLGAGAETNRPLSIAVIGGMI 995

Query: 807  VAASSSIFIAAPILLFI 823
             +   ++ +   +   +
Sbjct: 996  SSTLLTLVVVPAVYSLV 1012


>gi|239816579|ref|YP_002945489.1| acriflavin resistance protein [Variovorax paradoxus S110]
 gi|239803156|gb|ACS20223.1| acriflavin resistance protein [Variovorax paradoxus S110]
          Length = 1080

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 63/550 (11%), Positives = 153/550 (27%), Gaps = 38/550 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+L   I   G+       +       FP+                    L    
Sbjct: 10  RPIATVLLTIGIALAGIAAFFVLPVSPLPQVDFPTIS--------------VTASLSGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +        +      +I+L F   R  ++ A +V   +   
Sbjct: 56  PSTMASSVATPLERRLGVIAGVNELTSTSSNGSTRISLQFDLKRNIDSAAREVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N +        + +     +        +    +      ++   E   +
Sbjct: 116 RADLPATLRSNPIYRKRNPTAAPIAI-LALTSRTRTPGQIYEAVSNIVSQKLSQVEGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P  L +   ++  +                          N   
Sbjct: 175 VEIGGGSLPAVRVELEPFSLNRFGISSEDVRAAIQA--------------------NNAN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +             +      D+                 +   +       +
Sbjct: 215 RPKGAIENDERRLQIYTPSPGRHAVEYRDMVIAWRNGSAVRLGDVARVIDSVENTRTLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    + + +   +   T++    L   LRA         V      +   S    
Sbjct: 275 FNGQPAVIVLVTQEPGANIIDTVDGVRELLPELRAQLPQDIEVQVASDRTNSIRASLREI 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+ + +   +  ++   +  ++++ T  ++ LLG +L   S+  + +
Sbjct: 335 EATLMISIALVVLVVGLFLRRARATIIPAVATVVSLLGTFGVMHLLGYSLNNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E              +   G      T+   +++ +   + L F  G
Sbjct: 395 ATGFVVDDAIVVLENTSRHIEAGMGRIEAALRGAREVGFTVLSISLSLVAVFIPLLFMDG 454

Query: 483 GA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R FA+T+ +S+LIS+  +++    M   ++R ++  +     L+R        +
Sbjct: 455 QIGRLFREFAVTLSVSVLISLVISLTTTPMMCAMLLRAEEPGAKPPGRLARMAESVYQWS 514

Query: 540 IQFMRARFWG 549
           ++        
Sbjct: 515 LRTYAHSLDW 524



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 53/147 (36%), Gaps = 7/147 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            +    +      ++ +  T G   L G   N  ++ A+    G+ V+D +VV +     
Sbjct: 354 RRARATIIPAVATVVSLLGTFGVMHLLGYSLNNLSLMALTVATGFVVDDAIVVLEN---T 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
            +     +   +   +   E     +  S++     +P+    G +      FA+ ++  
Sbjct: 411 SRHIEAGMGRIEAALRGAREVGFTVLSISLSLVAVFIPLLFMDGQIGRLFREFAVTLSVS 470

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++++   S+    P++  +     +  
Sbjct: 471 VLISLVISL-TTTPMMCAMLLRAEEPG 496



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 78/222 (35%), Gaps = 9/222 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +   L              +    +  +    + +         G  ++ +  +   + +
Sbjct: 847  QDTELASTVSFNLGEGVTLQDARRIVAQAEADIAMPVNVRGSFQGTALAAQQSQGQQLAL 906

Query: 674  IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I++AI + IYI +          +  +TTL       +    LF +EF++ A+  +  LI
Sbjct: 907  ILAAIVV-IYIVLGVLYESLIHPITVLTTLPSAGVGAVLALLLFRMEFSIIALIGLFLLI 965

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL---PMA 787
            G    + +++ D   +        IS  + + ++        + T++AA +  L      
Sbjct: 966  GIVKKNAILIIDFALE--AERARGISAVEAVREACMLRFRPILMTTLAAALGALPLAIGF 1023

Query: 788  VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              G  +     + +  G++ +   ++     + + +   R +
Sbjct: 1024 GQGAELRQPLGVAIIGGLIASQLLTLLTTPVVYVLLDKLRRR 1065


>gi|254443643|ref|ZP_05057119.1| RND transporter, HAE1/HME family, permease protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198257951|gb|EDY82259.1| RND transporter, HAE1/HME family, permease protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 1035

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/646 (11%), Positives = 172/646 (26%), Gaps = 44/646 (6%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  I +L A      Q   +  P                   + +E    +     L   
Sbjct: 14  LTLIFILAAGMFAYIQIPKESDPDITIPTIY---------VSMYMEGISPEDAERLLVRP 64

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            ++  S ++       +  Q    +TL F      +     V   +    ++L    ++ 
Sbjct: 65  MEQELSSVEGVKEMTSNASQNSASVTLEFTAGFDPDAALADVREKVDLAGAELPQAAEEP 124

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +      +  +++   + D       + +    +   D+I      ++          +
Sbjct: 125 TVHEINLSQFPVIVITLSGDVPERALTKIA----KDLGDEIESIGQVLEARVIGDREEVV 180

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
               DP+ LR    +  ++       N             R +     L +         
Sbjct: 181 EVIIDPTILRSYNLSQGEIIGFISRNNKIVAAGNMDKGEGRFAVKVPGLFKSA------- 233

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
                        + V+DI     G +         + +          L          
Sbjct: 234 -------------QEVMDIPVKRDGDKVIRLADVATVRRTFKDRSAYARLNGEPAIGIEV 280

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
           S +A  +   TI     L    R            +             +        LV
Sbjct: 281 SKRAGENVLDTIAAVKELVESTRPQWPDNLSVTYSQDKSTGIRDMLLDLQNNVLSAIILV 340

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           +IV+ + +      L+   +I  + +  +  L  +G T+ +  +  +++ +G+ VD  I+
Sbjct: 341 MIVVIIALGVR-SALLVGIAIPGSFLAGVLFLFAVGYTVNIVVLFSLIMAVGMLVDGAIV 399

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAI 490
           V E    +  +      +      R    I  S +T L A   L F+    G  ++   I
Sbjct: 400 VTEFADRKMSEGLPKSEAYAEASKRMALPIIASTLTTLAAFAPLLFWPGIVGEFMKYLPI 459

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
           T+  ++  S+  A+  V ++     +     +  ++ L             F       +
Sbjct: 460 TLIATLSASLAMALIFVPSLGAIFGKANNSDNASLDALDGSKHADLTQLKGFTGWYARTL 519

Query: 551 GISILFSICSICLLF-------THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
              I   I  +  L             +G   +    +          +    +++    
Sbjct: 520 KKVIHHPILQLVSLVILFAGVLFTYGKFGHGIEFFPDVEPEFASMNIRARGNLSVDEADK 579

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                ++     + L  L  +    +    V E     +       
Sbjct: 580 LVRQVEDRIQGIDGLKFLYTRADPELRAQNVPEDTIGVVQFEFTHW 625



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/241 (9%), Positives = 78/241 (32%), Gaps = 11/241 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMVKKKITEIVP 647
            D++ VR   +                    R      D+  A   ++E  + +  + + 
Sbjct: 252 ADVATVRRTFKDRSAYARLNGEPAIGIEVSKRAGENVLDTIAAVKELVESTRPQWPDNLS 311

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
           ++  Q+       +  +L    +  +I+  I ++I + +R      +    + +  +   
Sbjct: 312 VTYSQDKSTGIRDMLLDLQNNVLSAIILVMIVVIIALGVRSALLVGIAIPGSFLAGVLFL 371

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   N+  + +++  +G  V+  +VV +      +  +  +   +   ++   
Sbjct: 372 FAV----GYTVNIVVLFSLIMAVGMLVDGAIVVTEFA---DRKMSEGLPKSEAYAEASKR 424

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                + +++    +  P+  W    G  +    I +   +  + + ++     +     
Sbjct: 425 MALPIIASTLTTLAAFAPLLFWPGIVGEFMKYLPITLIATLSASLAMALIFVPSLGAIFG 484

Query: 825 D 825
            
Sbjct: 485 K 485


>gi|107026105|ref|YP_623616.1| acriflavin resistance protein [Burkholderia cenocepacia AU 1054]
 gi|116692711|ref|YP_838244.1| acriflavin resistance protein [Burkholderia cenocepacia HI2424]
 gi|170738039|ref|YP_001779299.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3]
 gi|105895479|gb|ABF78643.1| acriflavin resistance protein [Burkholderia cenocepacia AU 1054]
 gi|116650711|gb|ABK11351.1| acriflavin resistance protein [Burkholderia cenocepacia HI2424]
 gi|169820227|gb|ACA94809.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3]
          Length = 1084

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 67/525 (12%), Positives = 153/525 (29%), Gaps = 36/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+L  +I   G L A+     ++ +D FP       IS+  +  G       +  
Sbjct: 11  RPYTFVVLALLILIAGPLAAV-----RTPIDIFPDIRIP-VISVVWNYAG-------LQP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           DD     +  Y   L + +           +    + + F  +        +VT   Q V
Sbjct: 58  DDMSGRVITYYERTLGTTVNDVQHIESQSFRGYGIVKIFFQPTVDIRTATAQVTSISQTV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++      + ++      + +     +     +     Q+        
Sbjct: 118 LKQMPPGTTPPQILNYNASTVPVLQIALTSNTL--DEQKLGDYAVNFIRPQLLSVPGVAI 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++  + DP  L+    +   ++      N         +            
Sbjct: 176 PTPYGGKTREVQIDLDPQALQSKGLSAQDVAHALAQQNQIIPAGTQKI------------ 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N  P +   + D+    +G    +     ++        +   
Sbjct: 224 --------GRFEYNIKLNNSPLSLDALNDLPIKSVGGTTIYIRDVAHVRDGYPPQGNIVR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                S    I        ++     P    +          G+ S  
Sbjct: 276 VDGHRAVLMSILKNGSASTLDIIAGVKAKLPLVEQTLPPGLKLVTMGDQSTFVNGAVSGV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A L  +++ + +   +  L+   SI L V+  +ALL+  G TL + ++ G+ L
Sbjct: 336 AREGIIAAALTSLMILLFLGSWRSTLIIAASIPLAVLSAIALLAATGETLNVMTLGGLAL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E +     + +    ++  G  +       S +   I  V +    G
Sbjct: 396 AVGILVDDATVTIENVNWHLEQGKDTRTAIVDGAKQIVMPALVSLLCICIVFVPMLMLDG 455

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            + R   + M  +++ SM ++  + R  +  + +Y          
Sbjct: 456 IS-RFLFVPMAKAVIFSMVSSFVLSRTFVPMLAQYLLKPHASAGH 499



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 75/193 (38%), Gaps = 7/193 (3%)

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           V++ +   + L T+ +           + R+GI+   ++++ +L+++     W   L   
Sbjct: 308 VEQTLPPGLKLVTMGDQSTFVNGAVSGVAREGIIAAALTSLMILLFLG---SWRSTLIIA 364

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ L +   +   A  G   N+  +  +   +G  V+D  V  + +             
Sbjct: 365 ASIPLAVLSAIALLAATGETLNVMTLGGLALAVGILVDDATVTIENVN---WHLEQGKDT 421

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           R  I     + +  ++ + +   I  +PM +  G     F +PMA  ++ +  SS  ++ 
Sbjct: 422 RTAIVDGAKQIVMPALVSLLCICIVFVPMLMLDGISRFLF-VPMAKAVIFSMVSSFVLSR 480

Query: 818 PILLFIYDWRAKN 830
             +  +  +  K 
Sbjct: 481 TFVPMLAQYLLKP 493



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 63/161 (39%), Gaps = 7/161 (4%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++G++ + + + + I + F  W  A   ++ L   +   +          ++ A+   + 
Sbjct: 905  LLGLVGAIVLIYLLIVVNFHSWADAFVIVSALPAALAGIVWMLFTTHTPLSVPALTGAIL 964

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G +  + ++V    R+  +L  T  +    ++          + T++A  I + PMA+
Sbjct: 965  CMGVATANSILVVSFARE--RLAETGNALASALEAGFTR-FRPVLMTALAMIIGMAPMAL 1021

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                GG         +  G+  A  +++F    +   ++  
Sbjct: 1022 GLGDGGEQNAPLGRAVIGGLACATIATLFFVPVVFSLVHRR 1062


>gi|114800248|ref|YP_759542.1| AcrB/AcrD/AcrF family protein [Hyphomonas neptunium ATCC 15444]
 gi|114740422|gb|ABI78547.1| AcrB/AcrD/AcrF family protein [Hyphomonas neptunium ATCC 15444]
          Length = 1079

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/511 (10%), Positives = 134/511 (26%), Gaps = 37/511 (7%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             +   + +L A          +  P                   + L     +     L
Sbjct: 14  MILTILVCVLFAGTITYINMPKEADPDIPIPFV---------AITVPLAGVTPEDSERLL 64

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               ++    L+          +   ++ L F      +     V   +         D 
Sbjct: 65  VRPIEQEIQSLEGLKTFNSYGTEGAAQLVLEFEIDADIDQAVLDVKDKVDMAKRYFPEDA 124

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           ++ ++      +  +++     +         + +      D++    + ++     +  
Sbjct: 125 REPIVTEFNASQFPVLVVNLYGEAPERGMARIAED----LKDRLESDGNVLEVRVLGKRE 180

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
             L    DP +L     +  ++       N               +     ++    +  
Sbjct: 181 ELLEIVVDPVKLETYNISYQEIMSVVSANNRLVAAGSIETGQGSFAVKVPGIIRTAGD-- 238

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                              + +   +            ++ +                  
Sbjct: 239 ------------------ALALPVKQTDNAVITLGDVADVRRTFKDPTGYATFNGERSLL 280

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                ++  +   T        A+ +    P    +V               + +     
Sbjct: 281 IEVVKRSGANILDTANNVREAIAIEQESWPPTVEAVVTSDTSEMIGTQLGQLQSSIMTAV 340

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            LV+I++   +      LV   SI    ++   LL   G T+ +  + G+V+ +G+ VD 
Sbjct: 341 LLVMIIVVAALGVRSAALVGI-SIPATFLMAFLLLGAFGFTINMMVMFGLVIAVGMLVDG 399

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA- 489
            I+V E    +  +      +  M   R +  +  S +T L A V   F+     +  A 
Sbjct: 400 GIIVTEYADRKMAEGLDRRQAYAMAGKRMFWPVVSSALTTLAAFVPFLFWNSMPGKFMAY 459

Query: 490 --ITMGLSILISMFTAISIVRAMMIFIIRYK 518
             IT+   +  S+ +A+  +  M        
Sbjct: 460 LPITLIFVLTASLISALIFLPVMGATFGARP 490



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/234 (8%), Positives = 66/234 (28%), Gaps = 5/234 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L  V     + +               +  ++    + +     +        E  P 
Sbjct: 252 ITLGDVADVRRTFKDPTGYATFNGERSLLIEVVKRSGANILDTANNVREAIAIEQESWPP 311

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
           +          ++    + +    ++ + + ++I +        A     ++        
Sbjct: 312 TVEAVVTSDTSEMIGTQLGQLQSSIMTAVLLVMIIVVAALGVRSAALVGISIPATFLMAF 371

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                FG   N+  +  ++  +G  V+  ++V +      +     +  R     +    
Sbjct: 372 LLLGAFGFTINMMVMFGLVIAVGMLVDGGIIVTE---YADRKMAEGLDRRQAYAMAGKRM 428

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAI--PMAFGIVVAASSSIFIAAPIL 820
               V +++    + +P   W        A        ++ A+  S  I  P++
Sbjct: 429 FWPVVSSALTTLAAFVPFLFWNSMPGKFMAYLPITLIFVLTASLISALIFLPVM 482



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 55/156 (35%), Gaps = 22/156 (14%)

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAV----AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            I TL   I  T G      +     ++      ++ L G  VN+ +V+ D      +L +
Sbjct: 890  ILTLTAVIISTAGVLVGINLVLPYVSILMIGTGIVALAGIVVNNNIVLIDTYN---RLLS 946

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV------------WGGSV---IGSF 797
               +  +    +  + +   + T+      +LPM +            +GG+        
Sbjct: 947  DGRAPEEAALATAAQRIRPILLTTGTTVCGLLPMVLQMTVVFSDGAINFGGATAEWWVQL 1006

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            A  + FG+  +    + +    LL  Y  + +  ++
Sbjct: 1007 ATAVVFGLGFSTIMILLVTPTWLLVPYRMKRRAKKL 1042


>gi|148262172|ref|YP_001228878.1| CzcA family heavy metal efflux protein [Geobacter uraniireducens
           Rf4]
 gi|146395672|gb|ABQ24305.1| heavy metal efflux pump, CzcA family [Geobacter uraniireducens Rf4]
          Length = 1048

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 84/678 (12%), Positives = 198/678 (29%), Gaps = 46/678 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +++++ +I   G+         ++ +D  P       I                 
Sbjct: 11  RNRVIILMIFGLIIAWGVWSV-----YKTPVDAIPDLSDNQVI---------VFTDYPGR 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          L +      S     + I + F D         +V   L  
Sbjct: 57  SPQVVEDQVTYPLAVNLQGLPQVRAVRASSAFGFSMIYVIFEDKADIYWARTRVLERLNY 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       L    T        +   ID       +           Q+       
Sbjct: 117 AASLLPPGVVPTLGPDGTGVGHVFWYT---IDGKGYDLEQLRTLQDWFVRYQLNTVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + +   + DP+RL     T  ++       NN   G +            + 
Sbjct: 174 EVASIGGFVREYQIDLDPNRLFAYKVTVGQVMEAIKRSNNDVGGRLLEQADAEFLIRGKG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   ++                    + ++ D  G   + +                 
Sbjct: 234 YIKSPKDLE------------------DIVVAADMRGTPIYVKTLGTVQLGGAIRRGLLD 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I   +   +    I+        L  G  P    +V          +   
Sbjct: 276 MNGEGEAVGGIVVMRYGENAKDVIDRVKEKITSLEKGLPPGVKIMVSYDRSDLIERAIET 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K      + +V +V+ + +L+ +  LV   ++ + V++    + LLG T  + S+ GI 
Sbjct: 336 LKRALTEESIVVSLVILVFLLHFQSALVIVLTLPIAVLIAFITMHLLGVTSNIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVF------CSLDMGFSRAYSTIFDSNITALIATV 475
           + IG+ VD+ +++ E       +             +     +    IF S    +++ V
Sbjct: 396 IAIGVLVDAGVIMVENCYRHLSEMPPEERKEKRLEVIITSAKQVGRAIFFSLAIIILSFV 455

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   S++ S F AI++V  +M + +R K          + F 
Sbjct: 456 PVFLLEGQEGKLFHPLAFTKTFSMMGSAFIAITLVPVLMYYFMRGKMPPESANPVSTFFI 515

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +   +    ++ +   + ++++    +I +  + G  +      G  L +     +   
Sbjct: 516 KLYSPVIRWVLKWKKTTIALNVVALAVAIPMFMSIGSEFMPPLDEGSLLYMPVT--LPNV 573

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +      +Q+ D   ++    ++ L ++      +      +      + +        
Sbjct: 574 SINEAKRLIQVQDQIIKSLPEVEHVLGKVGRAETSTDPAPISMFESIIILKDKDKWRPGI 633

Query: 653 NTEIVGPKISRELIRKGI 670
               +  ++  +L + G+
Sbjct: 634 TKADIVSELDAKLQQIGV 651



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 59/161 (36%), Gaps = 6/161 (3%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S +  L+ +     +  AL  + TL + +        L G+  N+ ++  +   IG  V+
Sbjct: 344 SIVVSLVILVFLLHFQSALVIVLTLPIAVLIAFITMHLLGVTSNIMSLGGIAIAIGVLVD 403

Query: 736 DKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             V++ +   R    M          ++I  S  +      ++     +S +P+ +  G 
Sbjct: 404 AGVIMVENCYRHLSEMPPEERKEKRLEVIITSAKQVGRAIFFSLAIIILSFVPVFLLEGQ 463

Query: 793 ---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +    A    F ++ +A  +I +   ++ +    +   
Sbjct: 464 EGKLFHPLAFTKTFSMMGSAFIAITLVPVLMYYFMRGKMPP 504



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 72/195 (36%), Gaps = 11/195 (5%)

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAITTLILDITKTL 708
                      +   ++  K  + +++ A  ++I+I + F ++ AL  ++  L +      
Sbjct: 847  PPGYYVAWSGQWENQVRAKKRLQLLVPAGILIIFILLYFTFHSALEASMVMLSVPFALVG 906

Query: 709  GFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-----TSISFRDLI 761
            G + +   G   ++      + L G +V   VV+   + + +         T     D  
Sbjct: 907  GVYLVKALGYNMSVAVWVGFIALYGIAVETGVVMVIYLHEALDKKLINGPCTEQDIYDAT 966

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T   A I ++P+      G  V+   A PM  G++ +A   + +   
Sbjct: 967  FEGAVLRLRPKLMTVAVALIGLVPIMWSTGTGADVMKPIAAPMIGGMISSAVHVLIMTPV 1026

Query: 819  ILLFIYDWRAKNARI 833
            I + +     K  ++
Sbjct: 1027 IFVLMKKRDLKKGKL 1041


>gi|296159624|ref|ZP_06842447.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
 gi|295890068|gb|EFG69863.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
          Length = 1061

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 77/555 (13%), Positives = 158/555 (28%), Gaps = 44/555 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L   I  IG L A+     ++  D FP                   +V + 
Sbjct: 9   LRRPYTFVVLAIFILIIGPLSAM-----KTPTDIFPDIRIPV-----------ISVVWQY 52

Query: 61  D--EDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                D + G +    +  L + +                I + F           +VT 
Sbjct: 53  TGLPPDQMVGRITSPFERTLTTTVNDVEHTEAESVAGFGIIKIFFQPGVNISTANAQVTS 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q    +L       L++      + I+    +   +           +      +   
Sbjct: 113 VAQTQLRQLPPGTTPPLILNYNASTVPIIQLALSGKGLSEQ--RLGDLGLNAVRPVLTTV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                         Q+  + DP+ L+    +   ++                        
Sbjct: 171 AGASIPYPFGGKTRQVQIDVDPAALQARGLSAQDVANALA-------------------- 210

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G   +     E  G +      N  P   K + D+          +     N+       
Sbjct: 211 GQNLITPVGTEKIGDYEYTLQLNNAPSQIKALGDLPVKAANGTTVYIRDIANVRDGSPPQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +               +S    I       A  +A                    
Sbjct: 271 TNIVHVDGHRSVLMSVLKNGSVSTLGIIAGVKQQIAAGKASWPDALRIDPIGDQSLFVRA 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +       I A L  +++ + +   +  L+   SI L ++ ++A LS LG TL + ++
Sbjct: 331 AITGVAREGVIAAVLTSLMILLFLGSWRSTLIIATSIPLAILGSIATLSALGETLNIMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I       + V  ++  G ++  +  F S +   I  V +
Sbjct: 391 GGLALAVGILVDDATVTIENINWHLEHGKEVETAILDGAAQIVTPAFVSLLCICIVFVPM 450

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           FF  G         A  +  +++ S F + ++V  M  ++++       D          
Sbjct: 451 FFLQGVARFLFVPMAEAVIFAMISSFFLSRTLVPTMAKYLLKPHAHGEHDEKRPGPLGRF 510

Query: 535 PDCIAIQFMRARFWG 549
                 +F + R   
Sbjct: 511 QRGFEARFEKIRTRY 525



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 82/265 (30%), Gaps = 7/265 (2%)

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            N     K    L V A     + +             +          ++    + G  
Sbjct: 233 NNAPSQIKALGDLPVKAANGTTVYIRDIANVRDGSPPQTNIVHVDGHRSVLMSVLKNGSV 292

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK---ISRELIRKGIVGVIISAIAMLIYIW 685
                +  + ++              + +G +   +   +      GVI + +  L+ + 
Sbjct: 293 STLGIIAGVKQQIAAGKASWPDALRIDPIGDQSLFVRAAITGVAREGVIAAVLTSLMILL 352

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
               W   L   T++ L I  ++   +  G   N+  +  +   +G  V+D  V  + + 
Sbjct: 353 FLGSWRSTLIIATSIPLAILGSIATLSALGETLNIMTLGGLALAVGILVDDATVTIENIN 412

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
                          I     + +  +  + +   I  +PM    G     F +PMA  +
Sbjct: 413 ---WHLEHGKEVETAILDGAAQIVTPAFVSLLCICIVFVPMFFLQGVARFLF-VPMAEAV 468

Query: 806 VVAASSSIFIAAPILLFIYDWRAKN 830
           + A  SS F++  ++  +  +  K 
Sbjct: 469 IFAMISSFFLSRTLVPTMAKYLLKP 493



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 64/162 (39%), Gaps = 7/162 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             + G++ + + + + I + F  W      +T L   +   +          ++ A+   +
Sbjct: 885  MLFGLLGAVVLIYLLIVVNFQSWADPFVIVTALPAALAGIVWMLFATHTTLSVPALTGAI 944

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              +G +  + ++V    R+  +L      F+  ++          + T+++  I + PMA
Sbjct: 945  MCMGVATANSILVVSFCRE--RLAVHGDPFKAALEAGFTR-FRPVLMTALSMIIGMAPMA 1001

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +    GG         +  G++ A ++S+F+   I   ++  
Sbjct: 1002 LALGEGGEQNAPLGRAVIGGLLFATTASLFLVPVIFCIVHAR 1043


>gi|257431993|ref|ZP_05608356.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257282872|gb|EEV13004.1| antibiotic ABC transporter [Staphylococcus aureus subsp. aureus
           E1410]
          Length = 822

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/592 (12%), Positives = 197/592 (33%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           IN+   +  A I+ + +  +    +       L    +    +
Sbjct: 95  KDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTSLKDGSRDNVKSHLKDLRDNHNVQ 154

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 155 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 214

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 215 TYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDYIKGIGLAVGTAGSAVIF 274

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI-- 523
           + +T +IA   L   G   +        +S++ ++F+A++++ A++    ++ K+  +  
Sbjct: 275 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHKHIKVNKLQS 334

Query: 524 -DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                +   +                 + ++    +  + L          D        
Sbjct: 335 IFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 394

Query: 583 VLANRP----------------------------VDLSVVRSNLESLQIGDISFQNFDGE 614
           +++++                               +     + +++ I      + D +
Sbjct: 395 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 454

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +  Q  ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 455 YALMVVIPKQGPNAESTNDLVHDLRDYNKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 514

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 515 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 574

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 575 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 631

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 632 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 683



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 86/263 (32%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +    L  ++ + + +      ++N    K+          D    +
Sbjct: 72  TKDDGIVQPSITKDIKKTLDDIKKDDKHIDKISDPYENKQINKDKTTAFADITYDVSQTS 131

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                     + +  L    N +             G    ++  I   + + I F    
Sbjct: 132 LKDGSRDNVKSHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 191

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 192 AAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 248

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   +   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 249 QVMKTETDYIKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 308

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 309 VFSALTLLPALISIFHKHIKVNK 331


>gi|254248193|ref|ZP_04941513.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
 gi|124874694|gb|EAY64684.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
          Length = 1084

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 67/525 (12%), Positives = 153/525 (29%), Gaps = 36/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+L  +I   G L A+     ++ +D FP       IS+  +  G       +  
Sbjct: 11  RPYTFVVLALLILIAGPLAAV-----RTPIDIFPDIRIP-VISVVWNYAG-------LQP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           DD     +  Y   L + +           +    + + F  +        +VT   Q V
Sbjct: 58  DDMSGRVITYYERTLGTTVNDVQHIESQSFRGYGIVKIFFQPTVDIRTATAQVTSISQTV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++      + ++      + +     +     +     Q+        
Sbjct: 118 LKQMPPGTTPPQILNYNASTVPVLQIALTSNTL--DEQKLGDYAVNFIRPQLLSVPGVAI 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++  + DP  L+    +   ++      N         +            
Sbjct: 176 PTPYGGKTREVQIDLDPQALQSKGLSAQDVAHALAQQNQIIPAGTQKI------------ 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N  P +   + D+    +G    +     ++        +   
Sbjct: 224 --------GRFEYNIKLNNSPLSLDALNDLPIKSVGGTTIYIRDVAHVRDGYPPQGNIVR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                S    I        ++     P    +          G+ S  
Sbjct: 276 VDGHRAVLMSILKNGSASTLDIIAGVKAKLPLVEQTLPPGLKLVTMGDQSTFVNGAVSGV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A L  +++ + +   +  L+   SI L V+  +ALL+  G TL + ++ G+ L
Sbjct: 336 AREGIIAAALTSLMILLFLGSWRSTLIIAASIPLAVLSAIALLAATGETLNVMTLGGLAL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E +     + +    ++  G  +       S +   I  V +    G
Sbjct: 396 AVGILVDDATVTIENVNWHLEQGKDTRTAIVDGAKQIVMPALVSLLCICIVFVPMLMLDG 455

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            + R   + M  +++ SM ++  + R  +  + +Y          
Sbjct: 456 IS-RFLFVPMAKAVIFSMVSSFVLSRTFVPMLAQYLLKPHASAGH 499



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 75/193 (38%), Gaps = 7/193 (3%)

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           V++ +   + L T+ +           + R+GI+   ++++ +L+++     W   L   
Sbjct: 308 VEQTLPPGLKLVTMGDQSTFVNGAVSGVAREGIIAAALTSLMILLFLG---SWRSTLIIA 364

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ L +   +   A  G   N+  +  +   +G  V+D  V  + +             
Sbjct: 365 ASIPLAVLSAIALLAATGETLNVMTLGGLALAVGILVDDATVTIENVN---WHLEQGKDT 421

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           R  I     + +  ++ + +   I  +PM +  G     F +PMA  ++ +  SS  ++ 
Sbjct: 422 RTAIVDGAKQIVMPALVSLLCICIVFVPMLMLDGISRFLF-VPMAKAVIFSMVSSFVLSR 480

Query: 818 PILLFIYDWRAKN 830
             +  +  +  K 
Sbjct: 481 TFVPMLAQYLLKP 493



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 63/161 (39%), Gaps = 7/161 (4%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            ++G++ + + + + I + F  W  A   ++ L   +   +          ++ A+   + 
Sbjct: 905  LLGLVGAIVLIYLLIVVNFHSWADAFVIVSALPAALAGIVWMLFTTHTPLSVPALTGAIL 964

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G +  + ++V    R+  +L  T  +    ++          + T++A  I + PMA+
Sbjct: 965  CMGVATANAILVVSFARE--RLAETGNALASALEAGFTR-FRPVLMTALAMIIGMAPMAL 1021

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                GG         +  G+  A  +++F    +   ++  
Sbjct: 1022 GLGDGGEQNAPLGRAVIGGLACATIATLFFVPVVFSLVHRR 1062


>gi|329850819|ref|ZP_08265664.1| protein helA [Asticcacaulis biprosthecum C19]
 gi|328841134|gb|EGF90705.1| protein helA [Asticcacaulis biprosthecum C19]
          Length = 1032

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/612 (12%), Positives = 173/612 (28%), Gaps = 53/612 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R    ++ L ++   +GL       +P + LD FP   P               + ++ 
Sbjct: 12  LRQRILVLALAAIFMVVGL-----RAIPHTDLDVFPEFAPPM-------------VEIQT 53

Query: 61  DEDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +        ++       +   + +              + + +   +          V 
Sbjct: 54  EAPGMSTEEVESLVTVPLETAINGVSGLKTLRSKSVLGLSSVVVILKEGTDVIRARQLVQ 113

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  V ++L    +  +++         +    +        +  S  +      ++  
Sbjct: 114 ERVALVATRLPSSVRPPVMLPPLSATSRAMKIGMSSK--TMDQMAMSDIVRMTVRPKLMA 171

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                      +   QL    DP+RL Q   T A +            G        R +
Sbjct: 172 VPGVANVAVWGQRDRQLQVLVDPARLAQAGVTVADVQRAAGDAALVGGGGFIDTPNQRLA 231

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
             +    E    +                                        + +  A 
Sbjct: 232 VRHLSAAETPAAL--------------------ALTVVKLSNGAPIRIGDVATVTEGHAA 271

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
            +   ++        I   +   +            A L+     I ++    R      
Sbjct: 272 PIGDAIINDVPGLLLIVEKQQGGNTLDVTRGVEAALADLKPALSGIDVDSTIFRPATFIE 331

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S         +   LV  VL +     +  +++  +I L+++    +LSL G  L    
Sbjct: 332 RSIHNLTQALWLGCALVAGVLILFTRDWRAAVISLTAIPLSLLGATYVLSLTGQGLNTMV 391

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITA 470
           IAG+V+ +G  VD  I+  E I    R N+        F  +        + +  +++  
Sbjct: 392 IAGLVIALGEIVDDAIIDVENIGRRLRLNRQLATPKPAFEVVLAASLEVRTAVVFASLIV 451

Query: 471 LIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           ++  + +FF GG +    R  A    L+I  S+  A+++  A+ + ++     +  +   
Sbjct: 452 MLVFLPVFFMGGVSGSFFRPLATAYILAIASSLLIALTLTPALCLLLMPKSSGEKTEPAM 511

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +S             +      +G+     + +     T    +  +F+    L     +
Sbjct: 512 VSGLKGAYRAFLPTMVGRPKLAMGLIAAGLMVAAVGYITTKDQFLPNFRETDFLMHFVEK 571

Query: 588 PVDLSVVRSNLE 599
           P         + 
Sbjct: 572 PGTSIEAMDRIT 583



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 79/217 (36%), Gaps = 7/217 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L+  + Q G+++  TR +E     +   +    + +T           I      + +  
Sbjct: 286 LIVEKQQGGNTLDVTRGVEAALADLKPALSGIDVDSTIFRPATFIERSIHNLTQALWLGC 345

Query: 678 IAML-IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
             +  + I     W  A+ ++T + L +       +L G   N   +A ++  +G  V+D
Sbjct: 346 ALVAGVLILFTRDWRAAVISLTAIPLSLLGATYVLSLTGQGLNTMVIAGLVIALGEIVDD 405

Query: 737 KVVVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            ++  + + + ++L     + +   +++  +  E     V+ S+   +  LP+   GG  
Sbjct: 406 AIIDVENIGRRLRLNRQLATPKPAFEVVLAASLEVRTAVVFASLIVMLVFLPVFFMGGVS 465

Query: 794 ---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                  A      I  +   ++ +   + L +    
Sbjct: 466 GSFFRPLATAYILAIASSLLIALTLTPALCLLLMPKS 502



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 81/225 (36%), Gaps = 10/225 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E                   V   V+ +++++   +      +      ++  R  ++  
Sbjct: 805  ENGSRRIDVTLNISGSDLGTVARAVEARVSQLQFAAGYHPEFLGEYAALQQSKRDLMIMG 864

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
                + +L+ IW+ F+    L A+  L L      G  A+   G   +L ++   +T++G
Sbjct: 865  GFCLMGVLLLIWLEFRSIR-LTALIALSLPFALLGGVVAVILSGGVMSLGSLVGFVTVLG 923

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISF-RDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
             S  + +++          +     F   LI +   E L   + T+  A +++LP+ +  
Sbjct: 924  ISARNGIMLISHY--QYLEFREGEPFGPGLILRGAEERLVPILMTASCAALALLPLIING 981

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G  +    A+ +  G++ + + ++ +   +           A
Sbjct: 982  KAPGHEIEHPMALVILGGLISSTALNLLLMPALYARFGQHAKPTA 1026


>gi|258621912|ref|ZP_05716942.1| conserved hypothetical protein [Vibrio mimicus VM573]
 gi|258585850|gb|EEW10569.1| conserved hypothetical protein [Vibrio mimicus VM573]
          Length = 1024

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 80/634 (12%), Positives = 188/634 (29%), Gaps = 45/634 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++    ++    +  +G             +  FP             L G     +E  
Sbjct: 9   KHPVIAMVFSIAVVLLGAWS-----FQSLEIKYFPEHDQ---------LTGSVSTTIEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKE--NIADKVTLF 118
             +F+   +     +  + + +         Q    + L F D     E  N+ +K+   
Sbjct: 55  SAEFMAKNVAEKLTDAAAMVGRVKTMSTKCVQGSCTLNLVFEDNVTDVEYINLMNKLRSR 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++ V        +K  +   +          + +    +   E    I +Q I Q    +
Sbjct: 115 VEAVKDFPPSMEEKPKVSDNSSDASFASNIISFVSTGDTTQQELFDYIRQQLIPQFRRLD 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +     P R++ L    + +     + + +              +
Sbjct: 175 GVGAIWGPYGGSAGAVRVWLLPDRMKALQVNPSDVVDAIEMYSTNFTAGKI------IGE 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
              Y +  K  +SG+                   +   E G+    +   + +    +V 
Sbjct: 229 ERSYSINPKNTVSGVD-------------DVANLVIRSEEGSTVRLKDVAEVVMGTYSVD 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +     +        L++         V          
Sbjct: 276 PSLLTINGNSAMAIQIKPLRSANPVSVAKLVREKVEQLQSALPEGVKMTVVYDQADFIQS 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S             LV +++ + +   +   +   +I + VI   ++++LLG ++ + ++
Sbjct: 336 SIQEGFNALLEAIVLVSLIMVLFLGSLRLASIPIITIPICVIGVFSVMALLGFSINVLTM 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E       + +S   +   G       +    +T  +    +
Sbjct: 396 LSIILAIGLVVDDAIVVAENCYRRVEQGESPLNAALKGSKEIAFPVIAMTMTLAVVYTPI 455

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLS 529
            F         R FA T+  ++LIS F A+++   M  ++I+      K    ++     
Sbjct: 456 GFMSGLTVDLFRQFAFTLAAAVLISGFVALTLSPMMCAYVIKPIKAPSKWFSWLESKQQR 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L    +   F R  +   G+S L  +  +   +   L    +  G I+  + A    
Sbjct: 516 LVELYLAELNKWFARKWWVVGGVSALLVLSGLIFWYAPNLLLPTEDTGFIEAKIQAPTGA 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +      N+  L     + ++     +++ +   
Sbjct: 576 NRQYNLDNVRGLNRIIDNEKSVAQNLSYIEQTPS 609



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 90/251 (35%), Gaps = 8/251 (3%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVA 630
           G+D    + +       V L  V   +      D S    +G     +++   +  + V+
Sbjct: 242 GVDDVANLVIRSEEGSTVRLKDVAEVVMGTYSVDPSLLTINGNSAMAIQIKPLRSANPVS 301

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFK 689
             +++    +++   +P               +  I++G   ++ + + + LI +     
Sbjct: 302 VAKLVREKVEQLQSALPEGVKMTVVYDQADFIQSSIQEGFNALLEAIVLVSLIMVLFLGS 361

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
              A   I T+ + +       AL G   N+  + +++  IG  V+D +VV +      +
Sbjct: 362 LRLASIPIITIPICVIGVFSVMALLGFSINVLTMLSIILAIGLVVDDAIVVAENC---YR 418

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIV 806
                 S  +   K   E     +  +M   +   P+    G  +     FA  +A  ++
Sbjct: 419 RVEQGESPLNAALKGSKEIAFPVIAMTMTLAVVYTPIGFMSGLTVDLFRQFAFTLAAAVL 478

Query: 807 VAASSSIFIAA 817
           ++   ++ ++ 
Sbjct: 479 ISGFVALTLSP 489



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 62/158 (39%), Gaps = 7/158 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +F+ +      + T+ L I   L    +FG   N+ +   +LTL+G 
Sbjct: 858  VMAIVFIYLILAAQFESFRDPFLILLTVPLCIIGALIALWVFGQSINIYSKIGLLTLVGL 917

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++ +      +     +   + +  S        + T+M   +  LP+A+    
Sbjct: 918  VTKHGILLVEFAN---QRQKEGMPLTEAMLSSARARFRPIMMTTMTMILGALPLALASGP 974

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G     +  + +  G++     S+F+     + +   R
Sbjct: 975  GSVGRVNIGLVLTGGLLSGTLFSLFVIPVAYVAMKSKR 1012


>gi|332142073|ref|YP_004427811.1| acriflavin resistance protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552095|gb|AEA98813.1| acriflavin resistance protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 1026

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 76/672 (11%), Positives = 198/672 (29%), Gaps = 41/672 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +L+  +   G++           L++FP       +           +      
Sbjct: 21  KPVTIGMLFLSMLLFGIVSG-----RLLPLEKFPGIDIPEMV---------VQIPYPDAT 66

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +E  + +               +I + F      +  + +    +  +
Sbjct: 67  PVEIETMITRPVEEAVATMSGIKRLRARSYDNMAEIIVEFDWDENLKAKSIEAREKIDAI 126

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  D ++ ++      ++ I   + + D+ +S+A +    + R     +       +
Sbjct: 127 RHELPDDIERIMVYKFNTNDMPIFQLRVSSDRDLSNAYDL---LERNLKRPLERVPGVSK 183

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+    DP ++        ++       N S                    
Sbjct: 184 VELYGTMKRQITIRLDPKKMAAYQIDGTRLEQQLQNANFSLTAGYMYN------------ 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +G  +           +          +       VT +   +     LD   
Sbjct: 232 -------NGEKILVNPTGEFSDVNDFKNMWVTRSVRLSDIASVTYELPQRNEGRHLDRTF 284

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                + +             +     ++               V +    +   S S  
Sbjct: 285 AVGFNVFRE----SGSNLVEVSDAVMKVIDKAKEDPEFTGISLFVMDDTAKSVTSSLSDL 340

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                + A L +IVL++ +      L+   S+  ++ +TL ++ LLG TL + S+ G++L
Sbjct: 341 LNAGLLGALLSVIVLYLFLRQLTTTLIVVLSVPFSICITLGVMYLLGYTLNILSLMGLLL 400

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD+ +++ E I +E ++  +V  +  +G ++    +     T  I  +       
Sbjct: 401 AVGMLVDNAVVITESIFQERQQEGNVKRATQIGVNKVSLAVIAGTATTAIVFLPNIIGVK 460

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             V  F   + ++I IS+F ++ I + ++  +    K+  +       +           
Sbjct: 461 IDVTIFLEHVAVAICISLFASLFIAKTLIPLLTTKVKIPVVKTALTPAYITRYGRALKWM 520

Query: 543 MRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
           ++ +     I++     +   +      + G + +  I L     +   L  V   ++ +
Sbjct: 521 LKHQGATCVIALAILASTFVPMQVVTSDDEGNNNQERIWLNYHVTQNFTLEEVEKTVDKM 580

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
           +      Q     K            S         V     +      + +     P  
Sbjct: 581 EAYLYENQARFHIKQVYTYFTPGHAVSGITLNDELPVSVASIKEDIRENMPSFVRARPSF 640

Query: 662 SRELIRKGIVGV 673
             +    G + V
Sbjct: 641 QWDSGNGGGIRV 652



 Score = 92.8 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 99/263 (37%), Gaps = 14/263 (5%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             I +G    + V L+++       Q+  I+             L+ +     A+ R+ + 
Sbjct: 755  NINIGFTQGQSVTLNMIADFSVVPQLSQINRNYRQTALAIGANLEGETTTEQARERIEQA 814

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
            +           T+  +     + +  +       ++++   + + +   F+        
Sbjct: 815  LANIELPTGYKWTLDGSFSRQDEANAVMQMN----MLLALCMIYVVMAALFESLILPTSV 870

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            IT+L+   T     F + G   ++  +  +L L+G  VN+ +V+ DR+    +L    +S
Sbjct: 871  ITSLLFSFTGVFWAFMVTGTSMSIMGMIGMLILMGIVVNNGIVLVDRIN---QLIGEGLS 927

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAAS 810
              D + +     +   + T     + ++P+A+        G      AI +  G+V +  
Sbjct: 928  LYDAVIEGCMTRVRPILMTVATTVLGLIPLALGSTRIGGDGPPYSPMAIAIIGGLVFSTL 987

Query: 811  SSIFIAAPILLFIYDWRAKNARI 833
            +S+F+     + +   R K  R+
Sbjct: 988  TSLFLVPLAYVLLLKLRFKTQRL 1010



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/316 (13%), Positives = 100/316 (31%), Gaps = 4/316 (1%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           +      K+  +I ++P        D   ++           +         +L      
Sbjct: 184 VELYGTMKRQITIRLDPKKMAAYQIDGTRLEQQLQNANFSLTAGYMYNNGEKILVNPTGE 243

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           +             + R  D++ V   L     G    + F    N          +   
Sbjct: 244 FSDVNDFKNMWVTRSVRLSDIASVTYELPQRNEGRHLDRTFAVGFNVFRESGSNLVEVSD 303

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
               +    K+  E   +S     +      S          +      +++Y+++R + 
Sbjct: 304 AVMKVIDKAKEDPEFTGISLFVMDDTAKSVTSSLSDLLNAGLLGALLSVIVLYLFLR-QL 362

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L  + ++   I  TLG   L G   N+ ++  +L  +G  V++ VV+ + + +  + 
Sbjct: 363 TTTLIVVLSVPFSICITLGVMYLLGYTLNILSLMGLLLAVGMLVDNAVVITESIFQERQQ 422

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                + +      +N+     +  +    I  LP  +     +  F   +A  I ++  
Sbjct: 423 ---EGNVKRATQIGVNKVSLAVIAGTATTAIVFLPNIIGVKIDVTIFLEHVAVAICISLF 479

Query: 811 SSIFIAAPILLFIYDW 826
           +S+FIA  ++  +   
Sbjct: 480 ASLFIAKTLIPLLTTK 495


>gi|86144275|ref|ZP_01062607.1| putative silver efflux pump [Vibrio sp. MED222]
 gi|85837174|gb|EAQ55286.1| putative silver efflux pump [Vibrio sp. MED222]
          Length = 1047

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 75/644 (11%), Positives = 174/644 (27%), Gaps = 39/644 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N +LV++ ++    G L ++ N    + +D  P       I                  
Sbjct: 11  SNRFLVLVATVAIVFGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    K  L    T                     E           ++   E   +
Sbjct: 118 APNLPSSAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAELRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  +            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYDLTLQQVNKAIQDGNQETGASVVEIAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P        +
Sbjct: 237 LTSIEDI------------------QSLPLKVTDKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I++     A L+AG       +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIDSVKSKLAELQAGLPDGVEIVATYDRSTLIDSAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V +V  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILGAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S I   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLIIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR   +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMATAAGLAITLVPVLMGYFIRGNVLPEHKNPVNRSLVAMY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    ++     + I++     +       G  +      G  + +    P       
Sbjct: 519 KPLLNLSLKYPKVMIVIALGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L       I            +       D    T +  +++
Sbjct: 579 RELLQQTNKLIKTIPEVETTWGKIGRAETATDPAPLTMIETVIQ 622



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 77/267 (28%), Gaps = 20/267 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L       + LS V           I  +N        V ++ +   S        +  
Sbjct: 780  PLVTPNGARIALSDVADIRYEDGPPMIKTENARPNGWVFVDIEGRDLGSYVAEAQKVVTD 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K +                 +    L    +V + I+ I +L+Y+  R         +  
Sbjct: 840  KIVLPAGYSLAWSGQYEYMERAKERL--SVVVPITIAIIMLLLYLSFR---RVGEVMMIM 894

Query: 700  LILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR----------KN 747
            L L +    G     +    F++      + L G +V   V++   +           + 
Sbjct: 895  LTLPLAMVGGLWLMHVLNYNFSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHYKKLDAEQ 954

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
             +         D I +     +   + T +   I ++P+      G  V+   A PM  G
Sbjct: 955  NQKALQREDLTDAIREGAGLRVRPVMMTVLTVIIGLIPIMYGEGTGSEVMQRIAAPMIGG 1014

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  A   ++ +   I          ++
Sbjct: 1015 MASALLLTLLVLPAIFKLWKQREITHS 1041



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 81/239 (33%), Gaps = 11/239 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++    ++   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVIDSVKSKLAELQAGLPDGVEIVATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + +      F    +L    +L + I          G
Sbjct: 326 DRSTLIDSAVENLWKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILGAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              ++ +   +S +P+    G     F+ P+AF    A +++  +A  ++  +  +  +
Sbjct: 442 PLFFSLIIITLSFVPVFALEGQEGKMFS-PLAFTKTYAMATAAGLAITLVPVLMGYFIR 499


>gi|285019225|ref|YP_003376936.1| rnd superfamily protein [Xanthomonas albilineans GPE PC73]
 gi|283474443|emb|CBA16944.1| probable rnd superfamily protein [Xanthomonas albilineans]
          Length = 1018

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 90/663 (13%), Positives = 187/663 (28%), Gaps = 43/663 (6%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            +  +I   G+L  +     +  +  FP+      I+           V    + + + G
Sbjct: 19  AIVLVITAFGILAIV-----RLPVQAFPTI-KYATIN--------ISTVYYGADPETIEG 64

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
           FL    ++     K       + +Q +++I L    +        +V   +  V S L  
Sbjct: 65  FLTSPLEQAVLPAKGIDFVTSTSKQGESEIVLHLTFNANPVETLAQVQSLVNAVLSNLPS 124

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
             +   +V     E  +      +    +   + S    R    +I           +  
Sbjct: 125 GTQNPAIVLDHGDESIL---DLALTSTTATGTQMSEYAQRVLKPEIATVPGVRSVAVNDS 181

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
           + + +    DP ++     T   +                         GN Y+      
Sbjct: 182 LPLAMRLNLDPYKMTAYGLTAEVVRDKVA--------------------GNNYVTGVGTI 221

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
                    T     +T     ++   E+           +     +             
Sbjct: 222 DGDTVSVPLTIASGLETVAEFNNLVVKEVNGSPIHLSDIGSAEIGTSRDKFAAYADGVPG 281

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                      +     +      ++L+    P     V E +      +        A 
Sbjct: 282 VFLDVVPNDGANIIQVAKAVKSKVSLLQKTLPPGIALSVNEDDTEFTRHALREVLHALAE 341

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              +V +++F+ +   +  L+   ++ L ++ +L  L+L G ++   ++  +VL +GL V
Sbjct: 342 ALLVVSLIVFVALRKIRSALIPVIAVPLALLGSLWCLNLFGYSINELTLLALVLSVGLVV 401

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAV 485
           D  I+V ER         S   + DM  S     I    I    A + +       G   
Sbjct: 402 DDAIIVVERHERHLESGLSTHDAADMAVSELLRPIVSMTIVLAAAYLPIALLPGIAGILF 461

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR- 544
           R FA+T+  S+ +S   A+++   +  FI+R              +        IQ    
Sbjct: 462 REFAVTLVTSVSVSALIAVTVSPLLCRFIVRRSTRAGSTGGSSHWYKARRVFDRIQATSL 521

Query: 545 --ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
              R   V    L        L +       + +G + L   A   +  +V R   + + 
Sbjct: 522 TNYRLVSVFGGALIVATVFFFLGSRQELAPQEDQGYVHLRGHATPGMSFAVSRQFDQDVL 581

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                        N +     + G S+          + I ++                S
Sbjct: 582 ASIAHSPYSGHSWNSVTPASIRGGISLIDWASRPSTAEVIDQLRQSLHGITGFSFSLYQS 641

Query: 663 REL 665
             L
Sbjct: 642 ESL 644



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 104/250 (41%), Gaps = 10/250 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            P+ LS + S          +         FL  +     + +   + ++     + + +
Sbjct: 253 SPIHLSDIGSAEIGTSRDKFAAYADGVPGVFLDVVPNDGANIIQVAKAVKSKVSLLQKTL 312

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM--LIYIWIRFKWYFALGAITTLILDI 704
           P     +      + +R  +R+ +  +  + + +  ++++ +R K   AL  +  + L +
Sbjct: 313 PPGIALSVNEDDTEFTRHALREVLHALAEALLVVSLIVFVALR-KIRSALIPVIAVPLAL 371

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             +L    LFG   N   + A++  +G  V+D ++V +R  +  +   + +S  D  D +
Sbjct: 372 LGSLWCLNLFGYSINELTLLALVLSVGLVVDDAIIVVER-HE--RHLESGLSTHDAADMA 428

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILL 821
           ++E L   V  ++    + LP+A+  G        FA+ +   + V+A  ++ + +P+L 
Sbjct: 429 VSELLRPIVSMTIVLAAAYLPIALLPGIAGILFREFAVTLVTSVSVSALIAVTV-SPLLC 487

Query: 822 FIYDWRAKNA 831
                R+  A
Sbjct: 488 RFIVRRSTRA 497



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 64/164 (39%), Gaps = 11/164 (6%)

Query: 671  VGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGI---EFNLTAVAAV 726
            + +++S   + + +      +   +  + ++   ++  L FF   G+     NL     +
Sbjct: 844  IMLLLSIAVVYLTLASFYNSFTDPIIILVSVPTSLSGAL-FFVWLGLGQLSVNLYTDVGL 902

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            LTL+G      +++ +   +      +    +D I  ++N  L   + TS A  +  LP+
Sbjct: 903  LTLVGLISKHGILLVEVANE---KQDSGQCKKDAILAALNIRLRPILMTSAAMIMGSLPL 959

Query: 787  AVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + GG       +    +  G+ +    ++ +   + + +   R
Sbjct: 960  LLIGGPGSAARSTIGCIVIAGLGIGTFLTLLVVPALYMLLAKPR 1003


>gi|332715575|ref|YP_004443041.1| NolG efflux transporter [Agrobacterium sp. H13-3]
 gi|325062260|gb|ADY65950.1| NolG efflux transporter [Agrobacterium sp. H13-3]
          Length = 1048

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 68/542 (12%), Positives = 162/542 (29%), Gaps = 40/542 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++   +  +GL       L +  LD +P+      +                   
Sbjct: 11  PVFATMMMVALLVMGLFS-----LQRLGLDLYPNVDVPVVV---------VSTAYPGATP 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   L    ++  + +        +  + ++ +   F         A +V   +  ++
Sbjct: 57  ETVETELTRPVEDALNAIGGLDEITSTSYEGRSVVVAKFKLEVKSATAAQEVRDKIAAID 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +    + KK ++         I+    +   +       +    ++ + Q+       Q 
Sbjct: 117 ANFPQEAKKPVISRFDPAAEPILSVAISSTSL--DIPALTALADQKVLRQLTTVPGVGQA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   Q+    D +R+R L     ++       N++             +   Q  +
Sbjct: 175 TLVGARKRQIDIVIDDTRMRALGIGINEVVSALRTGNSNSPAGSLVDTVSERTIQVQGRI 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                                  + ++D+     G    +      + +  A   +  V 
Sbjct: 235 --------------------PEPQALLDMVVARRGGAAIYLRDIAALSEGAADAENRAVY 274

Query: 304 TAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                           +    +      L A+            V          S +  
Sbjct: 275 NGQTALAIDIVKVQDANTVQVVADVRKRLDALNADLVPQNVQLRVITDTSIPIRESVTQV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T    A L + ++F+ +   +  ++   ++ + +I TLA++ ++G TL   S+  + L
Sbjct: 335 QTTLIEGAALAVAIVFLFLNSWRSTVITGLTLPIAIIGTLAVIDVMGFTLNTLSLLALTL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG+ VD  I+V E I       +S   +   G +     +  +  T +   + + F   
Sbjct: 395 SIGILVDDAIVVRENITRHLHMGKSHIRAALDGTNEIGLAVIATTATIVAVFLPVAFMDG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     F IT+  ++LIS+F A ++   +           +    P+ R     D   
Sbjct: 455 IVGRFFYEFGITVSAAVLISLFVAFTLDPMLSSVWYDPDAQPNAPRGPVGRLIARFDHGF 514

Query: 540 IQ 541
             
Sbjct: 515 EW 516



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 79/223 (35%), Gaps = 7/223 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
             N    L        A   V +++K            +       +   E +   +  + 
Sbjct: 808  DNRREVLVSANISGRALGEVTDVLKTLTAARDLPDGYRIRFGGDAETMEETVGHMVTALA 867

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ I + I +  +F  +   L  + +L L +   L    + G   N+ ++   + L+G  
Sbjct: 868  MAVIFIYIVLASQFGSFLQPLAIMASLPLSLIGVLVGLLVAGSTINMFSLIGFIMLMGLV 927

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ D      +     +S  + +  +        + T++A    ++P+ +  G  
Sbjct: 928  TKNGILLVDFAN---RERKRGLSLNEALASAGIIRFRPIIMTTLAMIFGMIPLGLAVGGG 984

Query: 794  I---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                   A  +  G++ +   ++ +   IL +I     + AR+
Sbjct: 985  GAQRAPMAHAVIGGLISSTLLTLIVVPTILSYIDSITRRFARL 1027



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  +A+A+ I       W   +    TL + I  TL    + G   N  ++ A+   IG 
Sbjct: 339 IEGAALAVAIVFLFLNSWRSTVITGLTLPIAIIGTLAVIDVMGFTLNTLSLLALTLSIGI 398

Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            V+D +VV    R+N+  +     S         NE     + T+       LP+A   G
Sbjct: 399 LVDDAIVV----RENITRHLHMGKSHIRAALDGTNEIGLAVIATTATIVAVFLPVAFMDG 454

Query: 792 SVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V      F I ++  ++++   +  +   +    YD
Sbjct: 455 IVGRFFYEFGITVSAAVLISLFVAFTLDPMLSSVWYD 491


>gi|294142629|ref|YP_003558607.1| Cation/multidrug efflux protein [Shewanella violacea DSS12]
 gi|293329098|dbj|BAJ03829.1| Cation/multidrug efflux protein [Shewanella violacea DSS12]
          Length = 1029

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 62/480 (12%), Positives = 151/480 (31%), Gaps = 25/480 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + + GF+    ++  +                +KIT+    +         +   +  V
Sbjct: 56  ANLIQGFITQPLEQALAQADNVDFMTSDSTLGTSKITVYMKLNTDPNGALADILAKVNSV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L  + + + +  +T  + S++      +Q+ S   + +  + R    ++   +   +
Sbjct: 116 RSQLPKEAEDSTVNMSTGSQTSVLYISFYSNQLNSS--QITDYLDRVVKPELFTIDGIAK 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 I   L    DP+R+     +++++       N           F   +      
Sbjct: 174 VNLYGGIKYALRIWLDPARMGAFNLSSSEVMQVLQANNYQSAVGQTNGVFTLFNGTADTQ 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V    E+                      +                ++    +  +   +
Sbjct: 234 VGTVDELK--------------------KLVIGSKKGLVIRLGDIADVSLEKSHDIYRAL 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +       A  L   +           +   +  A   S +  
Sbjct: 274 ADGQEAVVVALDVTPTANPLVVAADARALMPDIERNLPVSMKVRILFDSSLAIDESINEV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    + +V++V+ + +   +  ++   +I L++I    ++ + G TL L ++  +VL
Sbjct: 334 IKTIGEASLIVILVITLFLGSLRAVIIPIVTIPLSLIGVAIIMQMFGFTLNLMTLLAMVL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E +    +  ++ F +  +G       +    IT       +   G 
Sbjct: 394 AIGLVVDDAIVVVENVDRHIKLGETPFRAAIIGTREIALPVISMTITLAAVYAPIALMGG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   + FA+T+  S+ IS   A+++   M   I++ +   +     +  F        
Sbjct: 454 ITGSLFKEFALTLAGSVFISGIVALTLSPMMCSKILKPQTNPNRFERGVESFLGGMTKRY 513



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 6/146 (4%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            S I +L+           +  I T+ L +        +FG   NL  + A++  IG  V
Sbjct: 340 ASLIVILVITLFLGSLRAVIIPIVTIPLSLIGVAIIMQMFGFTLNLMTLLAMVLAIGLVV 399

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +    +      +          E     +  ++       P+A+ G   G
Sbjct: 400 DDAIVVVENV---DRHIKLGETPFRAAIIGTREIALPVISMTITLAAVYAPIALMGGITG 456

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAA 817
           S+   FA+ +A  + ++   ++ ++ 
Sbjct: 457 SLFKEFALTLAGSVFISGIVALTLSP 482



 Score = 62.4 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 70/187 (37%), Gaps = 11/187 (5%)

Query: 652  QNTEIVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDI---TK 706
             N + +G           +     ++   + + +  +F+     L  + ++ L I     
Sbjct: 830  YNYDFLGESRQYVTEGSALFATFGLALAIIFLVLASQFESLRDPLVILVSVPLAISGALI 889

Query: 707  TLGFFALFGIE-FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             LG+  +FG+   N+     ++TL+G      +++ +  ++        +S  D I  + 
Sbjct: 890  ALGWTHVFGLSSMNIYTQVGLITLVGLITKHGILMCEVAKEE--QLHNGLSKMDAIKLAA 947

Query: 766  NETLGRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLF 822
               L   + T+ A    ++P+    G   +  F I +    G+ +    ++F+   I  +
Sbjct: 948  TVRLRPILMTTAAMIAGLIPLLFAVGAGAVARFNIGLVIVSGLSIGTLFTLFVLPVIYTY 1007

Query: 823  IYDWRAK 829
            + +    
Sbjct: 1008 LAEKHEP 1014


>gi|42523684|ref|NP_969064.1| cation efflux system protein, AcrB/AcrD/AcrF family protein
           [Bdellovibrio bacteriovorus HD100]
 gi|39575891|emb|CAE80057.1| Cation efflux system protein, AcrB/AcrD/AcrF family protein
           [Bdellovibrio bacteriovorus HD100]
          Length = 1010

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 74/594 (12%), Positives = 173/594 (29%), Gaps = 31/594 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   + L        S     + I + F            V   +   
Sbjct: 27  PEEVETLVTFPLETALNGLPGVERVRSSSGVGLSVIYVEFGWDTDIYRNRQMVQEKIALA 86

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  +    L   ++     I     +       ++E           ++       Q
Sbjct: 87  KEKLPKNISPTLGPISSIMG-EIQFVGLSSPDNKVSSMELRTLADWTLRPRLMSIPGVSQ 145

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            +     + Q        +L++L  T  ++  +    + +  G                 
Sbjct: 146 VISIGGGVRQYQILISAEKLQKLQLTMDEVEHNLSDVSQNSTGGF--------------- 190

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +++ G            +  + +  +    +G     +   D +  P     DG +
Sbjct: 191 ----IDLEGQEFLIRNIGAVKEKEEIMNSVVGMHLGRPVLVKEIADVVEGPQTKRGDGSI 246

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +   +       +   T +    L          ++L     +       +    
Sbjct: 247 NGKPGVILTVQKQPGANTLELTEKIDEALKQFATTLPEGVELQPNLFKQSLFIETAIDNV 306

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K        LV IVLF+ ++  +   +   +I L+ +LT  +      ++   ++ G+ +
Sbjct: 307 KMALRDGVFLVFIVLFLFLMNFRTTAITMTAIPLSFVLTAIVFKFFDLSVNTMTLGGLAI 366

Query: 423 GIGLAVDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IG  VD  I+  E +    R+N      ++    +    S   ++I  + +  ++  V 
Sbjct: 367 AIGELVDDAIVDVENVYRRLRENKLLANPRNSLVVIYEASSEVRNSIVIATLIVVLVFVP 426

Query: 477 LFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           LF  GG   R      I+  +S+L SM  ++++  A+  + +   ++       L R+  
Sbjct: 427 LFSMGGIEGRLFVPLGISYIVSLLASMVVSLTVTPALCSYFLSKGELLEHKDGALVRWLK 486

Query: 534 IPDC--IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +       +       +LF+      L           +G   + V+A   + L
Sbjct: 487 KHQEQLLNKTLDNPKPVLWASGLLFAGSVALSLLVGRDFLPHFNEGSAVISVIAPPGISL 546

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                     ++  +             R +         T  +E+  K+    
Sbjct: 547 PESNKIGTQAELLIMKTPEVMTLSRRTGRAELDEHAEGVNTSEIEVDFKEKGRP 600



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 74/238 (31%), Gaps = 13/238 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V+   + ++       +        V L  Q         + E + + + +         
Sbjct: 227 VKEIADVVEGPQTKRGDGSINGKPGVILTVQKQPGANTLELTEKIDEALKQFATTLPEGV 286

Query: 654 TEIVGPKISRELIRKGI----VGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTL 708
                       I   I    + +      + I +      +      +T + L    T 
Sbjct: 287 ELQPNLFKQSLFIETAIDNVKMALRDGVFLVFIVLFLFLMNFRTTAITMTAIPLSFVLTA 346

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTTSISFRDLIDKS 764
             F  F +  N   +  +   IG  V+D +V    VY R+R+N  L     S   +I ++
Sbjct: 347 IVFKFFDLSVNTMTLGGLAIAIGELVDDAIVDVENVYRRLRENKLLANPRNSLV-VIYEA 405

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPI 819
            +E     V  ++   +  +P+   GG     F    I     ++ +   S+ +   +
Sbjct: 406 SSEVRNSIVIATLIVVLVFVPLFSMGGIEGRLFVPLGISYIVSLLASMVVSLTVTPAL 463



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 92/269 (34%), Gaps = 8/269 (2%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +                +     + +      +  +   + + +  N    +N   R+  
Sbjct: 726 VDVFMRFDDKSRTDLELIKRTPVKIMPDGSRITVEKVADVYESTGPNIIQRENAQRRIVV 785

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
           Q   +      +    KK  E           + G +   +     ++ V+     + I+
Sbjct: 786 QANSTDRSLDAIIGDIKKNIETKVEMPAGYYVVYGGQFESQQQASAMMTVLGLISILTIF 845

Query: 684 IWIRFKWYFALGAI-TTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           + +   +     +I   L + +    G  A+   G   ++ ++ A +TL G +  + +++
Sbjct: 846 LILYAHFKSTFISIQIMLNIPMAFIGGIIAIYVTGGTLSIASLVAFVTLCGIASRNGIMM 905

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGS 796
                  MK      S   ++  S+ E L   + T++ A + +LP+A+  G     ++  
Sbjct: 906 ISHYLHLMKHEGEEFSKHMVVRGSL-ERLVPVLMTALTAILGLLPLALSPGAPGREILHP 964

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            AI +  G++ +    +++   I      
Sbjct: 965 VAIVIVGGLLSSTLLDMYLTPAIFWKFGK 993


>gi|253997583|ref|YP_003049647.1| acriflavin resistance protein [Methylotenera mobilis JLW8]
 gi|253984262|gb|ACT49120.1| acriflavin resistance protein [Methylotenera mobilis JLW8]
          Length = 1051

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/672 (10%), Positives = 184/672 (27%), Gaps = 60/672 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +    +L  +I   G++        +  +DR P+      +          +  L   
Sbjct: 9   KRHVLAWMLSGVIVLFGIIA-----YNRIGVDRLPAIDFPVIM---------VNTTLRGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V+  +    +   +          S     + I+++FA  +  +   ++V   +  
Sbjct: 55  NPDVVDTSITSIIESAINTTPGIEHIQSSSSPGVSSISITFALDKNIDVAYNEVQAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L VD     +        +++    + D       + ++        +        
Sbjct: 115 VLRRLPVDADPPTIQKVDTNASAVIWLALSGD---RTIQQLNLYANNVLKKKFETINGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    +    +P R+     +   +       +    G                
Sbjct: 172 EVSIGGRRDRVIRVNVNPERMAAYKLSAQDLVDAFNREHIQLPGGFLVSATAEQLLKLDL 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              D  E+S                     I   + G                      R
Sbjct: 232 EFHDIKELSA-------------------LIVSTKDGMPIRLSDVASIEDGLTDNRQIAR 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P +   +       +     E    L   +R    P     +   +        + 
Sbjct: 273 YNGKPTVGLGMVKIANANTVEIIKEVERRLDQEIRPNLPPGLSLEISTNDAIFINQLVAS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K           +++ + +      ++    I ++++  +A++   G T    ++  ++
Sbjct: 333 LKEHLVEGTLFAALIVLIFMRSFSSTVMICLEIPVSLLGAIAVMYFAGYTFNSMTLLALL 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVF-----------------CSLDMGFSRAYSTIF 464
           L IG+ VD  I+V E I                             +   G +     + 
Sbjct: 393 LLIGVVVDDAIVVRESILRHMSGEVGEALSPADLKDPAKVALFRSQATRHGSNEVVFAVL 452

Query: 465 DSNI-TALIATVVLFFFGG--GAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRY 517
            S++    I   V+F  G      + FA+ +   +L+S+F ++++   +         + 
Sbjct: 453 ASSLSLVCIFAPVIFMSGVIGMFFKSFAVVVTFGVLVSLFVSLTLTPMLCSRYLSVTHKE 512

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
             +  +    L         +    ++ R + +  + +F   S  L   +     +    
Sbjct: 513 NAVYRLTGRGLDYLDTQYKKLLKITLKHRAFVLIFTAIFVATSGYLTLKYVEKDFVPESD 572

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                +    P+  S+  ++     + +I   +     ++   +       V + RV   
Sbjct: 573 ESSFSISLKTPLGSSLDYTDSRLKMVENILKNHTAEIDSYFSTIGTGSRGQVNEGRVNVR 632

Query: 638 VKKKITEIVPLS 649
           +K K        
Sbjct: 633 LKPKEQRAKSQQ 644



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 68/166 (40%), Gaps = 14/166 (8%)

Query: 674  IISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLI 730
            + +   +L+Y+ +  ++  F    +  L   +    G  AL   G   N+ ++  ++ LI
Sbjct: 872  VFALAFLLLYMVLASQFNSFLQPLLVMLAQPLAIIGGLIALLISGDSLNMYSMIGLVLLI 931

Query: 731  GYSVNDKVVVY-------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            G    + +++        D++R++  +  T+      + ++    L   + TS+   +++
Sbjct: 932  GLVAKNSILLVDLTNQLLDKVRESGAVINTTH-INAALQEACPVRLRPVLMTSLTIILAL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            LP A+    G       ++ +  G+V +   ++ +       +  W
Sbjct: 991  LPAAIGLGAGSETNKPLSVAIIGGMVSSTLLTLVVVPAAYSLLIGW 1036



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 81/216 (37%), Gaps = 22/216 (10%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                    + R+ + ++  +   + L    N  I   ++   L    + G + +A+ +L
Sbjct: 290 NTVEIIKEVERRLDQEIRPNLPPGLSLEISTNDAIFINQLVASLKEHLVEGTLFAALIVL 349

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I++     +   +     + + +   +      G  FN   + A+L LIG  V+D +VV 
Sbjct: 350 IFM---RSFSSTVMICLEIPVSLLGAIAVMYFAGYTFNSMTLLALLLLIGVVVDDAIVVR 406

Query: 742 DRMR--------KNMKLYTTSISFR------DLIDKSINETLGRSVYTSMAAFISVLPMA 787
           + +         + +         +             NE +   + +S+ + + +    
Sbjct: 407 ESILRHMSGEVGEALSPADLKDPAKVALFRSQATRHGSNEVVFAVLASSL-SLVCIFAPV 465

Query: 788 VWGGSVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
           ++   VI     SFA+ + FG++V+   S+ +   +
Sbjct: 466 IFMSGVIGMFFKSFAVVVTFGVLVSLFVSLTLTPML 501


>gi|283471771|emb|CAQ50982.1| mmpl domain protein [Staphylococcus aureus subsp. aureus ST398]
          Length = 829

 Score =  134 bits (337), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 72/592 (12%), Positives = 195/592 (32%), Gaps = 59/592 (9%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           I++   +  A I+ + +  +    +       L    +    +
Sbjct: 102 KDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTSLKDGSRDNVKNHLKDLRDNHNVQ 161

Query: 351 NVGADLGSDSIYKGTCAIVAGLVL--IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                 G  S   G  + + G+++  +VL +         +   S  + +   + ++SLL
Sbjct: 162 TELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLL 221

Query: 409 GATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
                +P++     +++G+ + +D  + +  R R+  +        + +    A S +  
Sbjct: 222 TYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYRQVMKTETDFVKGIGLAVGTAGSAVIF 281

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           + +T +IA   L   G   +        +S++ ++F+ ++++ A++    +  K+  +  
Sbjct: 282 AGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSTLTLLPALISIFHKRIKVNKLQS 341

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG-------- 577
           N                  A      I ++ +   +  +     + G+            
Sbjct: 342 NFKKDIDTPWSKFITGNALAAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYD 401

Query: 578 --------------GIQLGVLANRP---------VDLSVVRSNLESLQIGDISFQNFDGE 614
                          + + V   +            +     + +++ I      + D +
Sbjct: 402 IISDKFGEGFNGQIPMLINVKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDND 461

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----- 669
              +V +     ++ +   ++  ++    +       +        I+ ++ +K      
Sbjct: 462 YALMVVIPKHGPNAESTNDLVHDLRDYNKDAQDKYGFKTEISGQSVINIDMSKKLNEAIP 521

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF----------ALFGIEFN 719
           +   +I  +A  + + +       L A+   +L +  TLGF            LFGIE  
Sbjct: 522 LFATVIVVLAFFLLMIVFRSILIPLKAVLGFVLSLMATLGFTTFVMQDGFMKGLFGIETT 581

Query: 720 LTAVA-----AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              +A      +  L G +++ +V +  R+ +    Y+ +      I   + E+    V 
Sbjct: 582 GPMLAFLPVITIGILFGLAMDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVA 638

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++  F            +I S  + +AFG++  A     +  P L  ++  
Sbjct: 639 AALIMFSVFFAFVFQEDVMIKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 690



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 84/263 (31%), Gaps = 7/263 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G +Q  +  +       ++ + + +      ++N    K+          D    +
Sbjct: 79  TKDDGILQPSITKDIKKTFDDIKKDDKHIDKISDPYENKQISKDKTTAFADITYDVSQTS 138

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                       +  L    N +             G    ++  I   + + I F    
Sbjct: 139 LKDGSRDNVKNHLKDLRDNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVI 198

Query: 693 ALG-AITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNM 748
           A G  I + ++ +   +G  +L    F++  V   L + IG    ++  + +  R R   
Sbjct: 199 AAGLPIISALIGLASGVGIISLLTYVFDIPNVTLTLAVMIGLAVGIDYALFILFRYR--- 255

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++  T   F   I  ++       ++  +   I+V  +++ G   +       A  ++ A
Sbjct: 256 QVMKTETDFVKGIGLAVGTAGSAVIFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFA 315

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
             S++ +   ++   +     N 
Sbjct: 316 VFSTLTLLPALISIFHKRIKVNK 338


>gi|314935440|ref|ZP_07842792.1| membrane protein YdfJ [Staphylococcus hominis subsp. hominis C80]
 gi|313656005|gb|EFS19745.1| membrane protein YdfJ [Staphylococcus hominis subsp. hominis C80]
          Length = 861

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 81/552 (14%), Positives = 182/552 (32%), Gaps = 59/552 (10%)

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            +  + +    +++ +           +    NI  E+  G  +GS+            +
Sbjct: 141 IANISYVVPQTSMQDSSKKIVNKALQDIKDNHNIQIEKTTGMSMGSEPGSVSEIVG-IVV 199

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLAVD 429
             I+L +         +   S  L +  ++ ++SLL     +P+      +++G+ + +D
Sbjct: 200 AFIILLITFGSLIAAGMPIISAILGLATSVGMISLLTFMFDIPNFTLTLAVMIGLAVGID 259

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
            ++ +  R +E  +   +   ++      A S +  + IT ++A   L   G   +    
Sbjct: 260 YSLFILFRYKEIKKSGTATVEAIGKAVGTAGSAVIFAGITVMMAVCGLSLVGIDFLAIMG 319

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
               +S+L ++  A++++ A++    +  K+K+                 +         
Sbjct: 320 FASAISVLFAVLAALTLLPALISIFHKSIKIKNKPTKNKDPKHHPWAKFVVGKPVLATII 379

Query: 550 VGISILFSICSICLL--------------------FTHGLNYGIDFKGGIQLGVLANR-- 587
             + ++ +I  I  +                         N+G  + G I + V      
Sbjct: 380 SLVILILAIIPITGMRLGIPDDSLKPNDSSEHKAYQLISDNFGEGYNGQIVMLVNTKDGG 439

Query: 588 -----PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                  DLS +R ++E L   D   +      N        P +        ++V +  
Sbjct: 440 SKTSIENDLSNMRRDIEDLDNVDTVSKAQLNGNNHYAIFTIIPNEGPNAKSTTDLVYELR 499

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---------IVGVIISAIAMLIYIWIRFKWYFA 693
                     + +      S   I               VI+    +L+ I  R      
Sbjct: 500 DYHKDAEDKYHYDTEISGQSVINIDMSEKLNDAIPVFASVIVILAFILLMIVFR-SILVP 558

Query: 694 LGAITTLILDITKTLGF----------FALFGIEFNLT-----AVAAVLTLIGYSVNDKV 738
           L A+   +L +  TLGF            LFG++          V  +  L G +++ ++
Sbjct: 559 LKAVLGFVLSLMATLGFTTLVMQDGVMSGLFGVDNTGPLLAFLPVITIGLLFGLAIDYEL 618

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            +  R+ +    Y+ +      I   I E+    V  ++  F   +       + I S  
Sbjct: 619 FLMTRVHEE---YSKTGDNDHSIRVGIKESGPVIVAAALIMFSVFIAFIFQDDTAIKSMG 675

Query: 799 IPMAFGIVVAAS 810
           + +AFG++  A 
Sbjct: 676 LSLAFGVLFDAF 687



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 81/220 (36%), Gaps = 10/220 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++      ++++     S Q        +  + Y    +  Q    ++V K + +I    
Sbjct: 113 NIKQDDDYIQNISNPYESGQVNSEGDTAIANISYVVPQTSMQDSSKKIVNKALQDIKDNH 172

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG-AITTLILDITKTL 708
            IQ  +  G  +       G V  I+  +   I + I F    A G  I + IL +  ++
Sbjct: 173 NIQIEKTTGMSMGS---EPGSVSEIVGIVVAFIILLITFGSLIAAGMPIISAILGLATSV 229

Query: 709 GFFALFGIEFNLT-AVAAVLTLIGY--SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
           G  +L    F++      +  +IG    ++  + +  R ++   +  +  +  + I K++
Sbjct: 230 GMISLLTFMFDIPNFTLTLAVMIGLAVGIDYSLFILFRYKE---IKKSGTATVEAIGKAV 286

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
                  ++  +   ++V  +++ G   +       A  +
Sbjct: 287 GTAGSAVIFAGITVMMAVCGLSLVGIDFLAIMGFASAISV 326


>gi|197120657|ref|YP_002132608.1| acriflavin resistance protein [Anaeromyxobacter sp. K]
 gi|196170506|gb|ACG71479.1| acriflavin resistance protein [Anaeromyxobacter sp. K]
          Length = 1054

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/558 (11%), Positives = 152/558 (27%), Gaps = 42/558 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +   +   GLL  +         D FP   P               +V    
Sbjct: 9   KRPIVTITVMLALVIFGLLALV-----TLKTDEFPDVQPPVV---------AVTIVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKE--GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             + V   +    ++    +          S      +  + F   +        +   +
Sbjct: 55  SPETVEREVIDPIEDAIFSISGIDGKQTTASATDGLAQFIVFFDFEKNLMEATQDIRDAI 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  + ++ +LV     +  IV        +   A   +          +   + 
Sbjct: 115 SSKRQDLPTEMEEPVLVRFDPSQEPIVTLTLTSKTLPVPA--LTRLADEVVSRDLRSVQG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       +L  + DP  +     + A++       N +             S   
Sbjct: 173 VADVRLVGGQKRELTVQLDPEAMAAASVSAAEVVGALQAQNLAAPVGRVNTPLGEQSIRL 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +    E                       ++    G +         +         
Sbjct: 233 SGRLGTPEEFE--------------------QVAVASRGGQVVRLGQVAKVLDGAEEART 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +  +          K +      +  A    A      +      + + +      S 
Sbjct: 273 LALFNSGEAVGLEV-LKTKGYSTTAVADAVKERARALEPRMEGAKLAIVQDSGTRVRQSV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              + T    A L ++V+F+ +   +  ++   ++ ++V+     +   G TL   S+ G
Sbjct: 332 DDVQRTLVEGALLTVLVVFLFLNSWRSTVITGLALPVSVLAAFVSVWAFGFTLNTMSLLG 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVV 476
           + L IG+ +D  I+V E I       +    +   G      A +    S +   +    
Sbjct: 392 LSLAIGILIDDAIVVRENIVRHIELGEDHTTASHKGTDEIGLAVTATTFSIVAVFVPVAF 451

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           ++   G   + FA+T+  ++L+S+F + S+   M  +    +  K     P+ R     +
Sbjct: 452 MYGVAGQWFKPFALTIAAAVLVSLFVSFSLDPMMSAYWPDPQVEKGERRGPVGRALGAFN 511

Query: 537 CIAIQFMRARFWGVGISI 554
               +        V  ++
Sbjct: 512 RWFDRQASNYRRVVAWAL 529



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 82/244 (33%), Gaps = 8/244 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + V L  V   L+  +          GE   L  L+ +   + A    ++   + + 
Sbjct: 250 RGGQVVRLGQVAKVLDGAEEARTLALFNSGEAVGLEVLKTKGYSTTAVADAVKERARALE 309

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
             +  + +   +  G ++ + +       V  + + +L+       W   +     L + 
Sbjct: 310 PRMEGAKLAIVQDSGTRVRQSVDDVQRTLVEGALLTVLVVFLFLNSWRSTVITGLALPVS 369

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLID 762
           +         FG   N  ++  +   IG  ++D +VV    R+N+ +             
Sbjct: 370 VLAAFVSVWAFGFTLNTMSLLGLSLAIGILIDDAIVV----RENIVRHIELGEDHTTASH 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K  +E       T+ +     +P+A      G     FA+ +A  ++V+   S  +   +
Sbjct: 426 KGTDEIGLAVTATTFSIVAVFVPVAFMYGVAGQWFKPFALTIAAAVLVSLFVSFSLDPMM 485

Query: 820 LLFI 823
             + 
Sbjct: 486 SAYW 489



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 84/224 (37%), Gaps = 6/224 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  +V +Q           V E+ ++   E+         +        E+  +  V +
Sbjct: 810  DRQRVVSVQGNVAGRSLSEVVNEIERRLAGEVKLPPGYTLRQGGESADQAEVFTRIGVAL 869

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + M + + ++F  +      + +L L +   +    + G   NL ++  V+ L G 
Sbjct: 870  LLAVMLMYLVLVLQFGSFLDPFAILLSLPLSLIGVVLALLVTGDTINLMSLIGVILLFGI 929

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPMAVW 789
               + +++ D  +         +S RD + ++    L   + TS+A     + V      
Sbjct: 930  VAKNAILLIDFAK--WAREERGLSIRDALVEAGGIRLRPIMMTSVAVIAGMVPVASGLGE 987

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG         +  G++ +   ++ +   +   +  WR +  R+
Sbjct: 988  GGDFRAPLGRAVIGGVITSTLLTLLVIPTVYEIMDGWRTRLGRL 1031


>gi|253682514|ref|ZP_04863311.1| acriflavin resistance protein [Clostridium botulinum D str. 1873]
 gi|253562226|gb|EES91678.1| acriflavin resistance protein [Clostridium botulinum D str. 1873]
          Length = 1037

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 58/598 (9%), Positives = 163/598 (27%), Gaps = 40/598 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++    + L  +I   GL                P A       L +   GG+       
Sbjct: 10  KHRKITIFLTVLILVFGL-----GIYRVIPKQENPDASVGIARVLTI-YPGGT------- 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S +          +   + + +   D+   +    ++   +  
Sbjct: 57  -PEDVKNLVTKKLEDAASEIDGFDYVESYSKNSVSVLIVYLKDTADNDKAWRELRDKIND 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  +   + + T       +++S +  +         + EI R+    +   E   
Sbjct: 116 KKAELPAECFPSQINTDLVSTAGMIISLSGDNYSYDQLDSYAEEINRR----LSKIEGVT 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 ++  Q+  + D  +L+    +   ++    + N          +  +       
Sbjct: 172 SFDIDGKLDKQVKVDVDMDKLKNYPISLEDVTKALKVQNVKIPPGAIESKTSKIDVVTSN 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +I                    V +   E             I           
Sbjct: 232 GFDSIKDIEN------------------VVVYVSEDTGAIVRLKDIAKIYMDYNQDDVKY 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +     +        ++                     + S 
Sbjct: 274 KQDGKKAILLTGHFEDNKNIVLIGKDVRQEIEKIKKSLPNDLNFYEVLYQPTDVDNAVSD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
           +         LV++V+F  V      +V   ++ ++++L+  ++   G  +   S   ++
Sbjct: 334 FMTNLIEGIILVIVVIFAGVGVRNS-IVVSAALPISILLSFIMMHFAGIKVHQISTMALI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G+ VD+ I++++ ++ +  +      +   G   +   IF S +T + +   L    
Sbjct: 393 IALGILVDNAIVISDVVQVKINEGVDNVTAALEGAKESAIPIFTSTLTTVASFAPLLTIP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +        + +S++ S   A+ I  A+     +                     +
Sbjct: 453 GVPGKYVESIPKVVIISLIASYICAMFITPALAAVSYKKVTNAKQGKVMKKVETFFEKLL 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                + R   +    +  I  I         +    K  + +     +  D+     
Sbjct: 513 NFGLKKRRMTILISVGMLIIAGIVGTTLGLQFFPYANKSMMYINTTIEKKGDIKATED 570



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 5/137 (3%)

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            F   F +     L L I    G F +F    +L A+  +++L+G  V + +++ + +   
Sbjct: 875  FMQPFIIFLTIPLSL-IGSIFGLF-IFRQPLSLMALMGIVSLVGVVVKNAILLIEYIN-- 930

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
             K      S  D    ++ +     + ++    + + P+   G  +    A+ +  G++V
Sbjct: 931  -KARKEGYSLDDSCMDAMKKRFSPIILSAFTTVMGLAPIIPSGNPMFVPMAVALMCGLIV 989

Query: 808  AASSSIFIAAPILLFIY 824
            +   ++ I   +   I 
Sbjct: 990  STLLTLIIIPVLYNLIE 1006


>gi|73663824|ref|YP_302603.1| putative transporter [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72496401|dbj|BAE19658.1| putative transporter [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 862

 Score =  134 bits (337), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 83/678 (12%), Positives = 203/678 (29%), Gaps = 69/678 (10%)

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           +L     +      P       M G++ L  ++          E + + +   + + D  
Sbjct: 25  ILLLMIVVPLMLSAPKFDSDIKMNGLKSLDTNEKINKEFHQDSEKASMRMVFHSQSDDGI 84

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
           T           +   +  +    N+  P             + + +    +  +  +  
Sbjct: 85  TDDNTKKDIEKALDNIKQDDDDVLNVTNPYESKQINEDKDTAIADISYVVSQNSLKDSSK 144

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
                 L  +    +L I+       +      ++        I   +  ++L +     
Sbjct: 145 KNVDNELNDLKDKHNLQIETTNQAPFDAEIGASAE-------VIGIIVAFVILLITFGSL 197

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI---VLGIGLAVDSNILVNERIREE 441
               +   S  + +  ++ ++ LL     +P+ A I   ++G+ + +D ++ +  R +E 
Sbjct: 198 IAAGMPIISAVIGLGSSVGVIGLLTYVFDIPNFALILSVMIGLAVGIDYSLFILFRYKEI 257

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            +  +    ++ M    A S +  + +T ++A   L   G   +     +  +S+L ++ 
Sbjct: 258 AKTEKDYIKAIGMAVGTAGSAVIFAGVTVIMAVCGLSLVGIDFLTVMGFSAAISVLFAVL 317

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            +++++ A +    +  K+KS + +             +           + +  +I  I
Sbjct: 318 ASLTLLPAFISIFHKRIKIKSKETSKYGNVDTPWSKFVVGKPVLAIIASLVILGLAIIPI 377

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPV-----------------------------DLS 592
             +       G   K        A++ +                             +L 
Sbjct: 378 SNMRLGMP--GDSMKPTDSTQYKADKIISDEFGEGYNGQIVMLVNTKDSGSEKTVERNLD 435

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             R +LE     D               L   P +        ++V              
Sbjct: 436 NTRKDLEDYDNVDTVSSPQLSSNKNYALLSVIPEEGPNAVSTNDLVYDLRDYNKQAQDNY 495

Query: 653 NTEIVGPKISRELIRKG---------IVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
           +        S   I              GVI++   +L+    R      L A+   +L 
Sbjct: 496 DFNTEISGQSVINIDMSKKLNDAIPVFAGVIVALAFVLLMFVFR-SIIIPLKAVLGFVLS 554

Query: 704 ITKTLGF----------FALFGIEFNLTAVA-----AVLTLIGYSVNDKVVVYDRMRKNM 748
           +  TLGF            LFG+      +A      +  L G +++ ++ +  R+ +  
Sbjct: 555 LAATLGFTTLVMQEGFLSGLFGVSATGPILAFLPVITIGLLFGLAIDYELFLMSRIHEE- 613

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
             Y+ +      I   + E+    V  ++  F   +         + +  I + FG++  
Sbjct: 614 --YSKTGDNEHSIKVGVKESGPVIVAAALIMFSVFIAFVFQDDITVKAMGISLGFGVLFD 671

Query: 809 ASSSIFIAAPILLFIYDW 826
           A        P L  ++  
Sbjct: 672 AFIVRMTLIPALTKLFGR 689


>gi|260912795|ref|ZP_05919281.1| RND superfamily resistance-nodulation-cell division
           acriflavin/drug:proton (H+) antiporter [Pasteurella
           dagmatis ATCC 43325]
 gi|260633173|gb|EEX51338.1| RND superfamily resistance-nodulation-cell division
           acriflavin/drug:proton (H+) antiporter [Pasteurella
           dagmatis ATCC 43325]
          Length = 1044

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/555 (11%), Positives = 161/555 (29%), Gaps = 31/555 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              +    +   +  F+    +E  +                + IT+    +        
Sbjct: 47  VSTIYPGADASLIQAFVTSKLEEAVAQADNIDYLSSKSLPNSSLITIKMKLNTDPNAALA 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  V S+L       ++ ++T     ++  Q +  ++   A + +  I R    Q
Sbjct: 107 DVLAKVNSVRSQLPRGIDDPVITSSTGGT-GMMYIQFSSAKL--DASQVTDYIERVIKPQ 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
               E   +          L    DP+++     +   +       N           ++
Sbjct: 164 FFTVEGVAEVQIFGASDYALRIWLDPAKMASQNLSAMAVRSALSSNNVQTAAGNDNGFYV 223

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
              +  +   +   E+  + ++                      G +         +   
Sbjct: 224 TYKNKVETTTKSVEELGNLVIS--------------------SKGNKLVRLRDIAEVELN 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            +      V           +  +  +     E    L   ++          +      
Sbjct: 264 KSSDSTRAVANGLESVVLAINPTSSANPLVVAENVRPLYEQIKRNLPDSMSAEILYDTTI 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A   S      T      +VL+V+ + +   +  L+   +I +++I  + LL     ++ 
Sbjct: 324 AINNSIDEVVKTILEATIIVLVVITLFIGSLRAILIPVITIPISLIGVIMLLQAFDFSIN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  ++L IGL VD  I+V E +    +  ++ F +  +G       +    I  +  
Sbjct: 384 LMTLLALILAIGLVVDDAIVVLENVDRHIKLGETPFRAAIIGTREIAVPVISMTIALMAV 443

Query: 474 TVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDI 525
              +       G   + FA+T+  ++ IS   A+++   M   +        K  K I+ 
Sbjct: 444 YSPMALMDGITGSLFKEFALTLAGAVFISGVVALTLSPMMSSTLLKPHTDPSKLEKCIEH 503

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       + +     +      +I+F+                + +G   +    
Sbjct: 504 MLTKMNNGYNYALNLVMASRKCMLAFAAIIFATLPFLFNSLAHELTPAEDRGAFMVVGRG 563

Query: 586 NRPVDLSVVRSNLES 600
              V++  V+  +  
Sbjct: 564 PSNVNVDYVQEGMRE 578



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 94/293 (32%), Gaps = 27/293 (9%)

Query: 553  SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            S             + +   +     +    L N  V  S  +S   S  +         
Sbjct: 728  SAATIERVDIDGRAYRIIMQVKRDQRLSPESLNNYYVTASNGKSVPLSSFLTVTLEPQPT 787

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG--- 669
                F              T+ +    + +      +  Q         +R+L ++G   
Sbjct: 788  SLPRFSQLNSAVISAVPLPTKSIGEAVEWLKAAAQENLPQGYNYDFTSQARQLEQEGNAL 847

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI-----------------TKTLGF- 710
                +++ I + + + I+F+     L  + ++ L +                  +  G  
Sbjct: 848  AFTFVLAVIIIFLVLAIQFESIRDPLVIMISVPLAVSGALLTLNILSNTVPGLLRAFGIV 907

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +  G   N+ +   ++TL+G      +++ +  ++    Y  + +  + I ++    L 
Sbjct: 908  MSFPGTTLNIYSQVGLITLVGLITKHGILMCEVAKEQQLHYGKNRT--EAIMEAAKVRLR 965

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              + T+ A    V+P+      GG    S  I +A G+ +    ++F+   I 
Sbjct: 966  PILMTTAAMVAGVIPLLYATGAGGVSRFSIGIVIASGLTIGTLFTLFVLPVIY 1018



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 87/261 (33%), Gaps = 7/261 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + +    N+ V L  +     +             E   L        + +     + 
Sbjct: 240 GNLVISSKGNKLVRLRDIAEVELNKSSDSTRAVANGLESVVLAINPTSSANPLVVAENVR 299

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
            + ++I   +P S                I + +  ++ + I +L+ I          L 
Sbjct: 300 PLYEQIKRNLPDSMSAEILYDTTIAINNSIDEVVKTILEATIIVLVVITLFIGSLRAILI 359

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            + T+ + +   +     F    NL  + A++  IG  V+D +VV + +    +      
Sbjct: 360 PVITIPISLIGVIMLLQAFDFSINLMTLLALILAIGLVVDDAIVVLENV---DRHIKLGE 416

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSS 812
           +          E     +  ++A      PMA+     GS+   FA+ +A  + ++   +
Sbjct: 417 TPFRAAIIGTREIAVPVISMTIALMAVYSPMALMDGITGSLFKEFALTLAGAVFISGVVA 476

Query: 813 IFIAAPILLFIYDWRAKNARI 833
           + ++  +   +       +++
Sbjct: 477 LTLSPMMSSTLLKPHTDPSKL 497


>gi|241667785|ref|ZP_04755363.1| RND efflux transporter [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876329|ref|ZP_05249039.1| RND efflux transporter [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842350|gb|EET20764.1| RND efflux transporter [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 1038

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 151/524 (28%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G+         Q  + ++P                         
Sbjct: 9   RRPVLSLSISFMIIVVGVGS-----FFQLQVRQYPYIDSATIT---------VTTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +  F+    +      K       S     + IT+     +   ++  +V   +  
Sbjct: 55  NPATIQAFVTRPIEAAVGSSKGIDYMTSSSALGTSTITVYVKLGQNTNDVLSEVVQNVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  D     +          ++          +  E S  I  +   ++       
Sbjct: 115 VLNQLPQDAYSPAIKLNPADNFPSLILAFTSK--TMNTSEISAYINSELTPKLLAQGGLS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    + +R+ +   T  +++      +    G      +L  +     
Sbjct: 173 SVDVWGNKPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYT----- 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  T +   ++   +   +         +           
Sbjct: 228 ---------------LNPETSMSTAQEYRNLIIKKSDKQVVRLKDVAKVELGAQDYDSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A      + +    ++        ++A         +   +      S   
Sbjct: 273 YFDGKNAVLAGAVVSPEENPLDVVDRLVEELPNIKAALPNGLDVNIAYNSTTYIEVSIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V +V+F+ +   +  +V   +I L++I +  L+SL+G ++ L ++  ++
Sbjct: 333 VLHTLFEAVIIVSVVMFLFLGSFRAIIVPVVAIPLSIIGSFFLMSLMGFSINLLTLLSMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +    F +   G     + +    +T ++    +   G
Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMEPFAAAIKGAREIANPVILMTLTLVVVYAPIGMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G     FA ++  +++IS   A ++   +   I+  + M +
Sbjct: 453 GFTGQLFTEFAYSLAGAVVISGIVAYTLSPMLCSKILNREMMST 496



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 66/489 (13%), Positives = 149/489 (30%), Gaps = 28/489 (5%)

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA--GIVLG 423
            + +  +V +  F  +   ++  +   +I +      A  + + A +T P  A  G   G
Sbjct: 17  ISFMIIVVGVGSFFQLQVRQYPYIDSATITVTTAYPGANPATIQAFVTRPIEAAVGSSKG 76

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYSTIFDSNITALI 472
           I     S+ L    I    +  Q+    L                 AYS     N     
Sbjct: 77  IDYMTSSSALGTSTITVYVKLGQNTNDVLSEVVQNVNSVLNQLPQDAYSPAIKLNPADNF 136

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +++L F               S L     A   + ++            I  N      
Sbjct: 137 PSLILAFTSKTMNTSEISAYINSELTPKLLAQGGLSSV-DVWGNKPYAMRIYPNKTRMAE 195

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                  +         V          +        +     +    +   +++ V   
Sbjct: 196 YGITPTELATAIGSNSLVSAGGQIQGPYLNYTLNPETSMSTAQEYRNLIIKKSDKQVVRL 255

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-----RVLEMVKKKITEIVP 647
              + +E       S   FDG+   L      P ++           L  +K  +   + 
Sbjct: 256 KDVAKVELGAQDYDSSVYFDGKNAVLAGAVVSPEENPLDVVDRLVEELPNIKAALPNGLD 315

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
           ++   N+         E++      VII ++ M +++     +   +  +  + L I  +
Sbjct: 316 VNIAYNSTTYIEVSIEEVLHTLFEAVIIVSVVMFLFLG---SFRAIIVPVVAIPLSIIGS 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               +L G   NL  + +++  IG  V+D +VV + +    +     +       K   E
Sbjct: 373 FFLMSLMGFSINLLTLLSMILAIGLVVDDAIVVLENI---YRHIEEGMEPFAAAIKGARE 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  ++   +   P+ + G   G +   FA  +A  +V++   +  ++  +   I 
Sbjct: 430 IANPVILMTLTLVVVYAPIGMMGGFTGQLFTEFAYSLAGAVVISGIVAYTLSPMLCSKIL 489

Query: 825 DWRAKNARI 833
           +    + ++
Sbjct: 490 NREMMSTKL 498



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 88/286 (30%), Gaps = 14/286 (4%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                      S  ++     N  +  +    + + ++   DL      L +L       Q
Sbjct: 732  YINYFFLKGYSFQVIPQLARNEMLTQEQLGNIYIRSDEASDLFNSELPLSALVSFKTEGQ 791

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                     +                + +      +        +        + +    
Sbjct: 792  PLTLNTFQQLNASTISAVMAPGVTQGQAIDYVKNVVRSELPEGFSFNFSGSARQYIENGN 851

Query: 670  IVGVIISAIAMLIYIWIR-----FKWYFALGAITTLILDITKT---LGFFALFGI-EFNL 720
             + V  +   +LI++ +      F+    +     + +        +G +   G    N+
Sbjct: 852  TMMVAFAFAIVLIFLALSAQFESFRDSLVILVTIPMAISGALIPLYVGQYMGAGWASLNI 911

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 ++TLIG      ++V +    N       ++  D I  S ++ L   + T  A  
Sbjct: 912  YTQLGLVTLIGLISKQGIMVVE--FANHLQKHERMNKYDAIVTSSSQRLRPILMTVSAMV 969

Query: 781  ISVLPMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAPILLFI 823
            + V+P+    G   I      + ++ G+V+ A  S+F+   + ++I
Sbjct: 970  VGVIPLVTSSGAGAISRNCIGVVISSGLVIGAIFSLFVLPVVYMYI 1015


>gi|241761205|ref|ZP_04759293.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|241374112|gb|EER63609.1| acriflavin resistance protein [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 1083

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 69/603 (11%), Positives = 164/603 (27%), Gaps = 47/603 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI  +G+L A      ++  D FP                   ++ + 
Sbjct: 9   LRRPYTFIVMAVMIFIVGILSAF-----KTPTDIFPDIKIPI-----------VAVIWQF 52

Query: 61  DE--DDFVNGFLQMYSDELRSFL-KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                D +   +        + +                 + + F           ++T 
Sbjct: 53  QGMSPDDIQSRINTPYQRAMTTVVNNIDHLEAMSIANFGIVKIFFQPGTDIRLANAQITA 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q V   L       L++  +   + I+    +   +     + +          +   
Sbjct: 113 SAQTVLRSLPRGINPPLILNYSASTVPILQLSVHGKGLTEQ--QLNDLSFNAVRAGLITV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
             +         + Q+  + DP  L+    T   +S                +   + + 
Sbjct: 171 PGSAIPYPWGGRVRQIQFDVDPHALQSKGLTAQDISNTIAQQTQITPAGFAKIGPYQYNI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               +     ++                      +    +     +     ++    A  
Sbjct: 231 RLNNVPGSTEQL--------------------NHLPIKTVNGATVYVSDVAHVRDGAAPQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S              L  G                   
Sbjct: 271 TNVVHVDGARSVLLTVYKNGSASTVSVAAGILAKIPSLLVGLPSTLRVDALTNQAIFVQE 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S      AI A L  +++ + +   +  ++   SI L ++  L LLS  G TL + ++
Sbjct: 331 AISGVAREAAIAAVLTSLMIMLFLGSWRSTVIIAISIPLAIMSALGLLSAFGQTLNIMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I       + V  ++  G  +  +    S +   I  V +
Sbjct: 391 GGLALAVGILVDDGTVTIENINWHLEHGKDVIPAIIDGAMQIATPALVSTLCICIPFVPM 450

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS---RF 531
           FF  G          +++  ++L S   + ++V  + +++++    K    + +     F
Sbjct: 451 FFLPGIAGFLFAPMGMSVIFAMLASFLLSRTLVPTLAMYLLKPIPHKHDPEHAVKSSNIF 510

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                     F + R   V +           +        + F     LG      +D 
Sbjct: 511 VRFQQGFEHHFEKMRLGYVHLLEKALRAKWLFIVAFYGFVILSFTLSPFLGRNFFPSIDT 570

Query: 592 SVV 594
             +
Sbjct: 571 GSI 573



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 71/250 (28%), Gaps = 6/250 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V         V      +    ++   +        V              +L  +   
Sbjct: 249 TVNGATVYVSDVAHVRDGAAPQTNVVHVDGARSVLLTVYKNGSASTVSVAAGILAKIPSL 308

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +  +     +         +   +        I + +  L+ +     W   +    ++ 
Sbjct: 309 LVGLPSTLRVDALTNQAIFVQEAISGVAREAAIAAVLTSLMIMLFLGSWRSTVIIAISIP 368

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L I   LG  + FG   N+  +  +   +G  V+D  V  + +                I
Sbjct: 369 LAIMSALGLLSAFGQTLNIMTLGGLALAVGILVDDGTVTIENIN---WHLEHGKDVIPAI 425

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP-MAFGIVVAASSSIFIAAPIL 820
                +    ++ +++   I  +PM    G  I  F    M   ++ A  +S  ++  ++
Sbjct: 426 IDGAMQIATPALVSTLCICIPFVPMFFLPG--IAGFLFAPMGMSVIFAMLASFLLSRTLV 483

Query: 821 LFIYDWRAKN 830
             +  +  K 
Sbjct: 484 PTLAMYLLKP 493



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 78/216 (36%), Gaps = 8/216 (3%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            +    Q  D  A +  +  V  ++ +  P             ++      G  G++ + +
Sbjct: 841  IYGSIQGRDLGAVSNDILKVIHEMEKQKPKGVTVTLRGQYQTMNTAFQGMGF-GLLGAIV 899

Query: 679  AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + I I F  W      I  L   +   +    +     ++ A+   +  +G + ++ 
Sbjct: 900  LIYLLIVINFQSWLDPFIVIAALPGALAGIIWMLFVTKTTLSVPALTGAIMCMGVATSNS 959

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            V+V    R+         +      ++    L   + T++A  I +LPMA+    GG   
Sbjct: 960  VLVISFCRE---KMEEGFTSAQAALEAGATRLRPVLMTALAMIIGMLPMALGLGDGGEQN 1016

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                  +  G++VA ++S+F    +   ++    K 
Sbjct: 1017 APLGRAVVGGLIVATTASLFFVPSLFSLMHRNDPKK 1052


>gi|218246380|ref|YP_002371751.1| CzcA family heavy metal efflux pump [Cyanothece sp. PCC 8801]
 gi|218166858|gb|ACK65595.1| heavy metal efflux pump, CzcA family [Cyanothece sp. PCC 8801]
          Length = 1054

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 65/595 (10%), Positives = 174/595 (29%), Gaps = 48/595 (8%)

Query: 1   MRNN---PWLVIL-YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           ++N+    WL+++   ++   G+         Q  LD FP   P          +     
Sbjct: 10  LKNSITQRWLIVVGAILVTVWGVFSV-----TQMPLDVFPEFAPP---------QVDIQT 55

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
            +     + V   + +  +   + L        S +   + + + F            VT
Sbjct: 56  EVPGLAPEEVESQITVPIESAVNGLPGVTTVRSSSKVGLSMVQVVFEQDADIFKARQSVT 115

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID-QVISHAIEQSMEIIRQRIDQIG 175
             LQ + S+         +        +I+     ++ +  +  ++    +     +QI 
Sbjct: 116 ERLQQITSQFPEVTHPPEISPLVSPLGTILQYAFTVNGKGQTSLMDLRRLVEVTLSNQIL 175

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 Q         Q     DP++LR L  +  +++                      
Sbjct: 176 CVPGVSQVTIYGGDERQEQVLVDPTKLRTLKVSLTEVTEAAR------------------ 217

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G          I G            K+ + +          +         +    A
Sbjct: 218 --GANSNAPGGFLIGGGQELLIRGIGQVKSIEDLQQSVVKVQNNQPILLKDLAEVTTGSA 275

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           +               + + +  +      +    +   L+    P        R     
Sbjct: 276 LKRGDASFNGQPAVVLMINKQPDVDTPTVTKAVEAVMQSLQPTFPPDIQVAQTFRQANFI 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +      +      +V  ++ + ++  +  L+   +I L++++ +  +   G  +   
Sbjct: 336 DAAIRNVSSSLLEGIIIVSAIMLLFLMNWRTALITLSAIPLSLLIGVMWMKSFGLGINTM 395

Query: 416 SIAGIVLGIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ++ G+V+ +G  VD +I+  E    +         +   F  +   F      +  S + 
Sbjct: 396 TLGGLVVALGGFVDDSIVYMENCYRKLRENQAQGHHIQPFKVVFDAFVEVRLAVVFSTVI 455

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++    +F      G           LSI  S+F A+++  A+   ++  + + +    
Sbjct: 456 IIVVFAPIFSLTGVEGNIFAPMGWAYLLSIAASLFVAMTLTPALCAILLANQTLPAEATF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                  +        +R+    + +++   + +  L+   G  +  +F+    +
Sbjct: 516 FSRLAKRLYRPFLRLSLRSPQIILALALASLVAAFALVPALGRVFLPEFQEKSMV 570



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 93/253 (36%), Gaps = 7/253 (2%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            I+      + V  N+P+ L  +        +              L+  +    D+   
Sbjct: 245 SIEDLQQSVVKVQNNQPILLKDLAEVTTGSALKRGDASFNGQPAVVLMINKQPDVDTPTV 304

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKW 690
           T+ +E V + +    P                  IR     ++   I +  I +     W
Sbjct: 305 TKAVEAVMQSLQPTFPPDIQVAQTFRQANFIDAAIRNVSSSLLEGIIIVSAIMLLFLMNW 364

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRK 746
             AL  ++ + L +   + +   FG+  N   +  ++  +G  V+D +V  +    ++R+
Sbjct: 365 RTALITLSAIPLSLLIGVMWMKSFGLGINTMTLGGLVVALGGFVDDSIVYMENCYRKLRE 424

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
           N         F+ ++  +  E     V++++   +   P+    G     FA PM +  +
Sbjct: 425 NQAQGHHIQPFK-VVFDAFVEVRLAVVFSTVIIIVVFAPIFSLTGVEGNIFA-PMGWAYL 482

Query: 807 VAASSSIFIAAPI 819
           ++ ++S+F+A  +
Sbjct: 483 LSIAASLFVAMTL 495



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 94/250 (37%), Gaps = 9/250 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +  + P    +  S +  +  G  +      + + L+ +     +    + V ++    
Sbjct: 781  SIPLSTPTGQIIPLSRVAKVDYGMGANVVNREDVSRLIVVSANVAERDLGSVVGDIQATI 840

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              ++              +  +      ++  I++AI + I ++   K   A  AI  L 
Sbjct: 841  RQKVQLPKGYFIKYGGQFEAEQNATNNLLIYSILAAIVIAILMFFSVKSLPATIAI-MLN 899

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L +    G  ++   G   ++ ++   +TL G +V + +++ D        +   +  ++
Sbjct: 900  LPLALVGGIVSIMLSGGVISVASLVGFITLFGVAVRNGLLLVDNYN---NKFALGMPLKE 956

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +I K   E +   + T++ + +  LP+ +    G  ++   AI +  G+  + + ++ + 
Sbjct: 957  VIVKGSLERIDAILMTALTSALGTLPLVLSSGSGNEILQPLAIVVLGGLFTSTALTLLVI 1016

Query: 817  APILLFIYDW 826
              +      W
Sbjct: 1017 PALYAKFGKW 1026


>gi|167627232|ref|YP_001677732.1| RND efflux transporter [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597233|gb|ABZ87231.1| RND efflux transporter, AcrB/AcrD/AcrF family [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
          Length = 1038

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 151/524 (28%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G+         Q  + ++P                         
Sbjct: 9   RRPVLSLSISFMIIVVGVGS-----FFQLQVRQYPYIDSATIT---------VTTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +  F+    +      K       S     + IT+     +   ++  +V   +  
Sbjct: 55  NPATIQAFVTRPIEAAVGSSKGIDYMTSSSALGTSTITVYVKLGQNTNDVLSEVVQNVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  D     +          ++          +  E S  I  +   ++       
Sbjct: 115 VLNQLPQDAYSPAIKLNPADNFPSLILAFTSK--TMNTSEISAYINSELTPKLLAQGGLS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    + +R+ +   T  +++      +    G      +L  +     
Sbjct: 173 SVDVWGNKPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYT----- 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  T +   ++   +   +         +           
Sbjct: 228 ---------------LNPETSMSTAQEYRNLIIKKSDKQVVRLKDVAKVELGAQDYDSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A      + +    ++        ++A         +   +      S   
Sbjct: 273 YFDGKNAVLAGAVVSPEENPLDVVDRLVEELPNIKAALPNGLDVNIAYNSTTYIEVSIEE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V +V+F+ +   +  +V   +I L++I +  L+SL+G ++ L ++  ++
Sbjct: 333 VLHTLFEAVIIVSVVMFLFLGSFRAIIVPVVAIPLSIIGSFFLMSLMGFSINLLTLLSMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +    F +   G     + +    +T ++    +   G
Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMEPFAAAIKGAREIANPVILMTLTLVVVYAPIGMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G     FA ++  +++IS   A ++   +   I+  + M +
Sbjct: 453 GFTGQLFTEFAYSLAGAVVISGIVAYTLSPMLCSKILNREMMST 496



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 66/489 (13%), Positives = 149/489 (30%), Gaps = 28/489 (5%)

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA--GIVLG 423
            + +  +V +  F  +   ++  +   +I +      A  + + A +T P  A  G   G
Sbjct: 17  ISFMIIVVGVGSFFQLQVRQYPYIDSATITVTTAYPGANPATIQAFVTRPIEAAVGSSKG 76

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYSTIFDSNITALI 472
           I     S+ L    I    +  Q+    L                 AYS     N     
Sbjct: 77  IDYMTSSSALGTSTITVYVKLGQNTNDVLSEVVQNVNSVLNQLPQDAYSPAIKLNPADNF 136

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +++L F               S L     A   + ++            I  N      
Sbjct: 137 PSLILAFTSKTMNTSEISAYINSELTPKLLAQGGLSSV-DVWGNKPYAMRIYPNKTRMAE 195

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                  +         V          +        +     +    +   +++ V   
Sbjct: 196 YGITPTELATAIGSNSLVSAGGQIQGPYLNYTLNPETSMSTAQEYRNLIIKKSDKQVVRL 255

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-----RVLEMVKKKITEIVP 647
              + +E       S   FDG+   L      P ++           L  +K  +   + 
Sbjct: 256 KDVAKVELGAQDYDSSVYFDGKNAVLAGAVVSPEENPLDVVDRLVEELPNIKAALPNGLD 315

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
           ++   N+         E++      VII ++ M +++     +   +  +  + L I  +
Sbjct: 316 VNIAYNSTTYIEVSIEEVLHTLFEAVIIVSVVMFLFLG---SFRAIIVPVVAIPLSIIGS 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               +L G   NL  + +++  IG  V+D +VV + +    +     +       K   E
Sbjct: 373 FFLMSLMGFSINLLTLLSMILAIGLVVDDAIVVLENI---YRHIEEGMEPFAAAIKGARE 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                +  ++   +   P+ + G   G +   FA  +A  +V++   +  ++  +   I 
Sbjct: 430 IANPVILMTLTLVVVYAPIGMMGGFTGQLFTEFAYSLAGAVVISGIVAYTLSPMLCSKIL 489

Query: 825 DWRAKNARI 833
           +    + ++
Sbjct: 490 NREMMSTKL 498



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 88/286 (30%), Gaps = 14/286 (4%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                      S  ++     N  +  +    + + ++   DL      L +L       Q
Sbjct: 732  YINYFFLKGYSFQVIPQLARNEMLTQEQLGNIYIRSDEASDLFNSELPLSALVSFKTEDQ 791

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                     +                + +      +        +        + +    
Sbjct: 792  PLTLNTFQQLNASTISAVMAPGVTQGQAIDYVKNVVRSELPEGFSFNFSGSARQYIENGN 851

Query: 670  IVGVIISAIAMLIYIWIR-----FKWYFALGAITTLILDITKT---LGFFALFGI-EFNL 720
             + V  +   +LI++ +      F+    +     + +        +G +   G    N+
Sbjct: 852  TMMVAFAFAIVLIFLALSAQFESFRDSLVILVTIPMAISGALIPLYVGQYMGAGWASLNI 911

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 ++TLIG      ++V +    N       ++  D I  S ++ L   + T  A  
Sbjct: 912  YTQLGLVTLIGLISKQGIMVVE--FANHLQKHERMNKYDAIVTSSSQRLRPILMTVSAMV 969

Query: 781  ISVLPMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAPILLFI 823
            + V+P+    G   I      + ++ G+V+ A  S+F+   + ++I
Sbjct: 970  VGVIPLVTSSGAGAISRNCIGVVISSGLVIGAIFSLFVLPVVYMYI 1015


>gi|220920574|ref|YP_002495875.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
 gi|219945180|gb|ACL55572.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
          Length = 1034

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 74/663 (11%), Positives = 171/663 (25%), Gaps = 51/663 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I  +G +           +   P+                  + +    
Sbjct: 10  RPIATALLMVAIVVLGAIS-----YTLLPVAALPNIDTPT-------------IQVTAQL 51

Query: 63  DDFVNGFLQMYSDELRSF----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +              +        S      +ITL F  SR  ++ A  V   
Sbjct: 52  PGADPSTVASSVATQLERQFGQIPGLTQMTSSSGTGFTQITLQFDRSRTVDSAAGDVQAA 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     +L            T    + +L    +   +   +  S         +I    
Sbjct: 112 INATQGQLPAALLNPPTYHKTNPADTPILL-IALTSDVLPIMTVSDYANSILAQKISQIP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         L  + +P++L         +          +              G
Sbjct: 171 GVGFVGVGGLQSPALRIQVNPAQLAAENLDFETVRSALANLTVLQPK------------G 218

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             Y  +  V +         + F+                           + K      
Sbjct: 219 QLYGPQQAVALQTNDQLMTVSGFEDA--------IVAYRNGAPIRVRDIGRVVKAPQDTT 270

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L            +   +   T+         LRA   P     +          S
Sbjct: 271 LAGWLNEKPAVLLAVQRQPGANVTSTVAAIKAALPQLRASLPPGIQVEMVSDRTQTIQAS 330

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +  + T  +   LV+ V+ + +      ++   ++ ++++ T A++  LG +L   S+ 
Sbjct: 331 LADVQFTLLLTIALVVGVIALFLRKLWATVIPAIAVPISLVGTFAVMDALGYSLDNLSLM 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + + IG  VD  I++ E I     +  +   +   G      TI   +I+ +   +  F
Sbjct: 391 ALTIAIGFVVDDAIVMVENIVRHIEEGAAPLQAALKGAGEIGFTILSISISLIAVFIPFF 450

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIR-----YKKMKSIDINPLSR 530
             GG      R FA+T+ +SIL+S+  ++++   +   ++        +M  +  +  + 
Sbjct: 451 LMGGVVGLLFREFAVTVAVSILVSVVVSLTLTPMLCARLLPAGEGSPGRMSRLLEDFFTW 510

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                       +R RF  +   +     +  L       +      G+ +G+       
Sbjct: 511 LTRAYGRGLRVALRHRFLTLMSFLATVALTGYLFVIIPKGFFPQQDTGLIIGISEAAQDV 570

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                   +   +   S           +               + +  +   ++     
Sbjct: 571 SPQGMRQRQEAILAIASRDPAVASAVGYIGPGGPTVTENNGRVFITLKPEGERDVTADQV 630

Query: 651 IQN 653
           I  
Sbjct: 631 IVR 633



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 61/185 (32%), Gaps = 6/185 (3%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V+ Q     +     +   + +    + P   ++        I   L       ++  A+
Sbjct: 285 VQRQPGANVTSTVAAIKAALPQLRASLPPGIQVEMVSDRTQTIQASLADVQFTLLLTIAL 344

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + +      K +  +     + + +  T       G   +  ++ A+   IG+ V+D +
Sbjct: 345 VVGVIALFLRKLWATVIPAIAVPISLVGTFAVMDALGYSLDNLSLMALTIAIGFVVDDAI 404

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IG 795
           V+ + +   ++      +      K   E     +  S++     +P  + GG V     
Sbjct: 405 VMVENI---VRHIEEGAAPLQAALKGAGEIGFTILSISISLIAVFIPFFLMGGVVGLLFR 461

Query: 796 SFAIP 800
            FA+ 
Sbjct: 462 EFAVT 466


>gi|28275286|ref|NP_783541.1| multidrug resistance protein [Shewanella oneidensis MR-1]
          Length = 629

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 68/533 (12%), Positives = 159/533 (29%), Gaps = 39/533 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R       +  ++  +G      N L    +  +P                         
Sbjct: 9   RRPVLAASISFLLLLLG-----FNALNSMQVREYPKMTNTVVT---------VSTSYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + + GF+    ++  +                +KI++    +         +   +  
Sbjct: 55  DANLIQGFITQPLEQALAQADNVDFMTSESFLGTSKISVYMKLNTDPNGALADILAKVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T  + S++      DQ+ S   + +  + R    Q+   +   
Sbjct: 115 VRSQLPKEAEDPSVEMSTGSQTSVLYISFFSDQINSS--QLTDYLERVVKPQLFTIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I   +    DP+R+     + + +       N           +   +     
Sbjct: 173 KVNLYGGIKYAMRIWLDPARMGAFNLSASDVMQVLQANNYQSAVGQTNSVYTLFNGTADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+                      +                ++    +  +   
Sbjct: 233 QVATIEELK--------------------RLVIGSKDGLVVRLGDIADVSLEKSHDIYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +                 +          L   +     P   + +   +  A   S   
Sbjct: 273 LANGKEAVVIGLDVTPTANPLTVAADTRALLPEIERNLPPSIESSILYDSSLAIDESIKE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +V++V+ + +   +  ++   +I L++I    ++ + G TL L ++  +V
Sbjct: 333 VVKTIGEAAIIVIVVITLFLGSLRAVVIPIVTIPLSLIGVAIIMQMFGFTLNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    +  +S F +  +G       +    IT       +   G
Sbjct: 393 LAIGLVVDDAIVVVENVDRHIKLGESPFRAAIIGTREIAVPVISMTITLAAVYAPIALMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
              G   + FA+T+  S+ IS   A+++   M   I++     +     +  F
Sbjct: 453 GITGSLFKEFALTLAGSVFISGIVALTLSPMMCAKILKPHTTPNRFEMGVENF 505



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 56/146 (38%), Gaps = 6/146 (4%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + I +++           +  I T+ L +        +FG   NL  + A++  IG  V
Sbjct: 340 AAIIVIVVITLFLGSLRAVVIPIVTIPLSLIGVAIIMQMFGFTLNLMTLLAMVLAIGLVV 399

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +D +VV + +    +      S          E     +  ++       P+A+ G   G
Sbjct: 400 DDAIVVVENV---DRHIKLGESPFRAAIIGTREIAVPVISMTITLAAVYAPIALMGGITG 456

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAA 817
           S+   FA+ +A  + ++   ++ ++ 
Sbjct: 457 SLFKEFALTLAGSVFISGIVALTLSP 482


>gi|317051836|ref|YP_004112952.1| acriflavin resistance protein [Desulfurispirillum indicum S5]
 gi|316946920|gb|ADU66396.1| acriflavin resistance protein [Desulfurispirillum indicum S5]
          Length = 1038

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 65/668 (9%), Positives = 185/668 (27%), Gaps = 52/668 (7%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV--NGF 69
            +     ++I+      +   +  P                  ++V+     D +     
Sbjct: 12  VLFIAFAIVISGITSYIKLPKESIPDITIPV-----------VNIVVTHTGVDALGMEKN 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +     +        +  +  + I++ F            V   +  + S+L  D
Sbjct: 61  VTQKIENSVRSVSGIKRMTSTSSEGLSSISIEFMTHVNIRTALQDVKDKVDQIQSELPAD 120

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               ++      E  I+    + +            +     D++      +      + 
Sbjct: 121 ADTPIVSEINLSEFPIMFLNLSGNDQG-----LLEYLADMLDDELSAIPGVLGIDIYGKR 175

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
            +++    D  R+  L     ++    +  + +       V                  I
Sbjct: 176 DLEIFVSLDLDRIEALGVDPIQVGQQILRESITVNNGKLYVDGNVFHVKTDGEFNSPDPI 235

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             + +  +                         +      +            L      
Sbjct: 236 LNLKIPTSAGFT---------------------YLRDLGTVDFVEKEDRTLSRLDGKPSV 274

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 +A  +          +              I    +   ++           + 
Sbjct: 275 SLSIKKQAGSNLLGIAAQVYAIVDYFNEHRPDGVEEIAITGDQAVEIQMMLEDLENSVLT 334

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L + ++   +L G+  ++    I  +++   A+LS +  TL +  +  ++L +G+ VD
Sbjct: 335 ALLAVFLVTCFILGGRNTVIVSLVIPFSMLCAFAILSAMNVTLNMIVLFSLILALGMLVD 394

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVR 486
           + I+V E I   +     +  ++  G       I  S +T L A + L F+    G  ++
Sbjct: 395 NAIVVVENIYRLSTT-MPLSHAVIRGVREVAVPITTSTLTTLCAFIPLLFWDGVIGDFMK 453

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
              IT+ +++  S+ TAI +   ++  I  +   +     PL + +      ++   +  
Sbjct: 454 YLPITLIITLSASLATAIILTP-IISRIFLHPHKRVFRKPPLLKVYEKSLLWSLHHRKTV 512

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES------ 600
                   + ++       T    +         + +  ++  D       + +      
Sbjct: 513 ITTAFGLFVATLFLYGTFNTGMELFPAVETRNAVIKLDMSKNTDRDTTDQAVRTIEGIVE 572

Query: 601 --LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
               +       F G     ++   Q   + +  + ++ ++  +      +T        
Sbjct: 573 GFADVESYVSTVFQGRAQINIQFYEQELRTQSSFKTIDDIRDALPAFAMGTTEVLARQDS 632

Query: 659 PKISRELI 666
           P  + +L 
Sbjct: 633 PTSAYDLT 640



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/255 (14%), Positives = 92/255 (36%), Gaps = 20/255 (7%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
               P    V    L +++  ++ +Q         + ++ Q  D +    V + +   I 
Sbjct: 745 TIPNPQGQQVALGELIAIEYSNMLYQVNRKNNQRAITIESQVRDGINAFTVQQDLDAFIR 804

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
            +   + +        +  +E +   +     +   +   +  +F  +   L    T+I 
Sbjct: 805 TLELPAGVYVNFAGQAEDQQETMEFLVWAFFTALFLIFTVLIFQFHSFMIPLIIGMTVIF 864

Query: 703 DITKTLGFFALFGIEFNLTAV-AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            I   L    + G+ F +  V   V++L G  VN+ +V++D +   ++ Y  +      I
Sbjct: 865 SIMGVLLGLLIMGMPFGIVMVGIGVVSLAGIVVNNAIVLFDYI---LRRYEKTGDMYKSI 921

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVI----------GSFAIPMAFGIV 806
             +    L   + T+    + ++PM       + G  I           S ++ + FG++
Sbjct: 922 VNAGKIRLRPVLLTATTTMMGLMPMFFAISINFTGLSIAHGTESSQWWQSMSVTIVFGLM 981

Query: 807 VAASSSIFIAAPILL 821
           V+   ++ +   +  
Sbjct: 982 VSTVLTLIVVPTMFY 996



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 79/262 (30%), Gaps = 12/262 (4%)

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
            H    G        L +        + +R       +          +    V L  + 
Sbjct: 221 FHVKTDGEFNSPDPILNLKIPTSAGFTYLRDLGTVDFVEKEDRTLSRLDGKPSVSLSIKK 280

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS----RELIRKGIVGVIISAIAML 681
                   +   V   +            EI          + ++      V+ + +A+ 
Sbjct: 281 QAGSNLLGIAAQVYAIVDYFNEHRPDGVEEIAITGDQAVEIQMMLEDLENSVLTALLAVF 340

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +           +     +   +       +   +  N+  + +++  +G  V++ +VV 
Sbjct: 341 LVTCFILGGRNTVIVSLVIPFSMLCAFAILSAMNVTLNMIVLFSLILALGMLVDNAIVVV 400

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFA 798
               +N+   +T++     + + + E       +++    + +P+  W    G  +    
Sbjct: 401 ----ENIYRLSTTMPLSHAVIRGVREVAVPITTSTLTTLCAFIPLLFWDGVIGDFMKYLP 456

Query: 799 IPMAFGIVVAASSSIFIAAPIL 820
           I +   +  + +++I I  PI+
Sbjct: 457 ITLIITLSASLATAI-ILTPII 477


>gi|194336734|ref|YP_002018528.1| acriflavin resistance protein [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194309211|gb|ACF43911.1| acriflavin resistance protein [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 1034

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 70/589 (11%), Positives = 169/589 (28%), Gaps = 43/589 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +V++++++  +GL         Q   +  P   P               +     
Sbjct: 9   KRPTLIVVIFTVLGILGLFS-----YRQLQYELLPKMTPPVVT---------ISIRYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   L    +E  S ++K      +  +  + + + F++S   E         +  
Sbjct: 55  SPGEVETSLTKPVEEAVSAIEKISSITSTSTEGLSVVAIEFSNSANIEKALQDAQRKINE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V      + K  ++      E+ ++          +   +    +      Q+       
Sbjct: 115 VRDSFPDEAKAPVITRFALDEVPVLRIGATSSLPDTDFYQL---LKDDIKPQLASIAGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D  RL+    T   +       N             +       
Sbjct: 172 QVYLLGGREREIKVNIDLERLQSYSLTIPDVLKEVGKANIDFPTGKIDDSDKQFVVRLAG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+                      +                 +      +    
Sbjct: 232 KFTSLEELGA--------------------LVLRSSSTGTVTLRDVAEVEDGFKEITTLT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA-GSLPIKLNIVEERNVGADLGSDS 360
            +        +   ++  +            + L A          + +      L + +
Sbjct: 272 RVNGRSAVGIMVMKQSDANTVDVSRLTRATLSRLTALYHSKNLSFDIAQDASTFTLEAVT 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   LV +V+ + +   +  L+   SI  +++ T   +   G +L L ++  +
Sbjct: 332 AVQHDLMLAILLVALVMMLFLHSLRNSLIVLVSIPTSLVTTFIGMYAFGFSLNLMTLLSL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVL 477
            L +G+ VD +I+V E I     + +    +   G +    T   I   ++   +   ++
Sbjct: 392 SLVVGVLVDDSIVVLENIYRHLERGEEPRHAALTGRNEIGFTALSITLVDVVVFLPLSLV 451

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
               G  +R F++ M +S L+S+F + ++   +      +     K+I       F    
Sbjct: 452 SGIVGNILREFSVVMVISTLVSLFVSFTLTPLLASRFSKVEKFSGKNIFERFAIAFENSF 511

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             +   ++    W +         +I LLF+  L     F GG  + V 
Sbjct: 512 QRLREGYLNLLQWSLRNPRKVFFSAIILLFSSFLLPFFGFIGGEFISVS 560



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 95/259 (36%), Gaps = 8/259 (3%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            ++         + + +        G    Q  D      V+ Q       +  + +E + 
Sbjct: 775  EITFRTPEGDLVRLGQFVSFEQDRGYTQLQRKDRNNAVWVKAQVIGRPVGSIGKEIERIM 834

Query: 640  KKITEIVPLSTIQNTEIVGP-KISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAI 697
              + +   + +  +       K   E     ++  +++ I + LI + +   W + +  +
Sbjct: 835  GNMKKSGFMPSTVSYAYESDLKRQGESNSTLLLSFLVAIIFVYLIMVALYDSWIWPMVVM 894

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             ++ L +   L   AL G   ++  +  ++ L+G    + +++ D +    K     +  
Sbjct: 895  FSIPLALIGALFALALTGKSLSIFTILGIIMLVGLVGKNAILLVDFIN---KFRLEGMEL 951

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIF 814
               I ++  E L   + T++     +LP+A+ G S        A+ +  G+  +   ++ 
Sbjct: 952  SVAIIEAARERLRPILMTTLTLIFGLLPIALSGSSGSEWKSGLAVALVGGLASSMFLTLL 1011

Query: 815  IAAPILLFIYDWRAKNARI 833
            +   + ++      K AR+
Sbjct: 1012 VIPVVYVWFDRMSRKLARL 1030



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 80/243 (32%), Gaps = 12/243 (4%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +       +R   E                   V +            V  + +  ++ +
Sbjct: 246 SSSTGTVTLRDVAEVEDGFKEITTLTRVNGRSAVGIMVMKQSDANTVDVSRLTRATLSRL 305

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTL 700
             L   +N      + +     + +  V     +   +  L+ +        +L  + ++
Sbjct: 306 TALYHSKNLSFDIAQDASTFTLEAVTAVQHDLMLAILLVALVMMLFLHSLRNSLIVLVSI 365

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
              +  T      FG   NL  + ++  ++G  V+D +VV + +    +        R  
Sbjct: 366 PTSLVTTFIGMYAFGFSLNLMTLLSLSLVVGVLVDDSIVVLENI---YRHLERGEEPRHA 422

Query: 761 IDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                NE    ++  ++   +  LP+  V G  G+++  F++ M    +V+   S F   
Sbjct: 423 ALTGRNEIGFTALSITLVDVVVFLPLSLVSGIVGNILREFSVVMVISTLVSLFVS-FTLT 481

Query: 818 PIL 820
           P+L
Sbjct: 482 PLL 484


>gi|332295013|ref|YP_004436936.1| protein-export membrane protein SecD [Thermodesulfobium narugense
           DSM 14796]
 gi|332178116|gb|AEE13805.1| protein-export membrane protein SecD [Thermodesulfobium narugense
           DSM 14796]
          Length = 484

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 137/373 (36%), Positives = 221/373 (59%), Gaps = 17/373 (4%)

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
            V    ++    +I  R++ +G+SE  IQ  G++ +L+QLPG +D      ++G TA + 
Sbjct: 50  TVNKEVMQGVKAVIENRVNGLGVSEPLIQLKGNNSVLVQLPGIKDYQNALNVIGKTAFLE 109

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           F +                         +   K  ++G  L           ++PVVDI+
Sbjct: 110 FKE----------------PIYDTATGQITGWKTVLTGADLQD-AKVGYDSNNRPVVDIT 152

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
           F+  GA++F EVT +NI KPLA+ LD + ++AP++ +AI  GKAQISGNFT+++A  LA 
Sbjct: 153 FNSEGAKKFAEVTANNIDKPLAIFLDNKEISAPIVKEAITGGKAQISGNFTLQSAKELAI 212

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
            ++AG+LP+ + +VE+R VG  +G D++  G  A   GL+L+ +FM++ Y   GL+AD +
Sbjct: 213 QIKAGALPVPVKLVEQRVVGPTIGKDAVDSGWKAGFIGLLLVAIFMVLYYRLPGLIADLA 272

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           + L  ++ LA+   +  TLTLP IAG +L IG+AVD+NIL+ ER++EE RK   +  ++D
Sbjct: 273 LVLYGVIVLAIFKFIPVTLTLPGIAGFILSIGMAVDANILIFERLKEELRKGIPLISAMD 332

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
           +GF RA   I DSN + LI T VLF +G   ++GFA+T+ + +++S FTA+ I RA+M  
Sbjct: 333 LGFKRALPAIIDSNASTLITTAVLFTWGSSIIKGFAVTLAIGVIVSFFTAVIISRALMDL 392

Query: 514 IIRYKKMKSIDIN 526
           ++  +  K +   
Sbjct: 393 VVHIEFFKKLGFY 405



 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 79/167 (47%), Gaps = 4/167 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
             +VGP I ++ +  G     I  + + I++ + ++    L A   L+L     L  F  
Sbjct: 228 QRVVGPTIGKDAVDSGWKAGFIGLLLVAIFMVLYYRLP-GLIADLALVLYGVIVLAIFKF 286

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             +   L  +A  +  IG +V+  +++++R+++ ++     I     +D      L   +
Sbjct: 287 IPVTLTLPGIAGFILSIGMAVDANILIFERLKEELR---KGIPLISAMDLGFKRALPAII 343

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            ++ +  I+   +  WG S+I  FA+ +A G++V+  +++ I+  ++
Sbjct: 344 DSNASTLITTAVLFTWGSSIIKGFAVTLAIGVIVSFFTAVIISRALM 390



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/119 (14%), Positives = 38/119 (31%), Gaps = 23/119 (19%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W +I   +   I +   +P                   +  GLDL+GG  +VLE     
Sbjct: 7   RWGIIFIVLAVAIAINYLMP-------------------LKEGLDLQGGMEVVLEAQNTK 47

Query: 65  ---FVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFL 119
                   +Q     + + +   G+    ++ +  N + +     +  +N  + +    
Sbjct: 48  NITVNKEVMQGVKAVIENRVNGLGVSEPLIQLKGNNSVLVQLPGIKDYQNALNVIGKTA 106


>gi|239993929|ref|ZP_04714453.1| CzcA family heavy metal efflux protein [Alteromonas macleodii ATCC
           27126]
          Length = 1045

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 89/676 (13%), Positives = 205/676 (30%), Gaps = 42/676 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED------ 63
           +  +   +G++      LP   LD FP                 +++ + V+ +      
Sbjct: 14  ILVVGLLLGIIAGSAMLLPSLNLDAFPDV---------------TNVQVSVNTEAPGLAA 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + +   +    + +   L          +   + +T+ F +          V   LQ   
Sbjct: 59  EEIEQLITYPIEAVMYALPDVEEVRSISKTGLSAVTVVFKEGTDIYFARQLVFERLQTAK 118

Query: 124 SKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + +  +     +   T+        S    D     A+             +   +    
Sbjct: 119 AFIPENVGTPEMGPNTSGLGQIYQYSLIADDGAKYDAMALRSLNDWVVKLLLMPVDGVTD 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L     + Q     DPS+L     +   +       N +  G+             Q +
Sbjct: 179 VLSFGGEVRQYQVNVDPSKLLAYGLSQQDLVTALQRNNTNVGGWYLE------RGQEQLV 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     ++            P      V ++  ++   +     R           DG+V
Sbjct: 233 VRGTGWLASGEQGIHDIEQVPVKTVDGVVVTVSDLADVKTGPEIRQGAVTLSQRASDGKV 292

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +   TI+      A++                      + S  
Sbjct: 293 EQFGEVVTGIVLKRMGANTKATIDGINSRVALINQALPEGVSFTPFYDQANLIEKAISTV 352

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I    + IVL + ++      +   +I + + + LA+++ +G +  L S+ GI +
Sbjct: 353 VKALTIAFVFITIVLALFLMNVGATFLVLITIPIAIAMALAIMAFMGLSANLMSLGGIAV 412

Query: 423 GIGLAVDSNILVNERIREE--------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG+ VD ++++ E I +         +   QS   S+ +        IF +    L+  
Sbjct: 413 AIGMLVDGSVVMVENIFKRLNANTSSSHEDAQSFKSSVKLAGKEVARPIFFAASIILVVF 472

Query: 475 VVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
             LF F G      +  AI++ L++L +   A+  V A+  F+ +  +        +   
Sbjct: 473 APLFSFEGVEAKLFQPMAISIMLAVLCATVVALFFVPALATFLFKRTRNVKPSALLIPVE 532

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 ++   +  ++  + + +L       +            +G I L V+       
Sbjct: 533 RAYQRALSFTLLHTKWLVLLVGLLLVSAVALVPKIGTEFVPELEEGTINLRVIL---APS 589

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S + ++L      +     F      L R+         +      +   +  +    + 
Sbjct: 590 SSLETSLAVASTLEEKLLAFPEVTYALSRIGRAEIGGDPEPVNNIEIYIGLKPVSKRESA 649

Query: 652 QNTEIVGPKISRELIR 667
           +N + +  K+  EL +
Sbjct: 650 RNRDELQQKMQAELSQ 665



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 91/254 (35%), Gaps = 9/254 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +    P    +   ++ S+       Q    +    V +Q         + V E+    
Sbjct: 796  DIRLQSPSGAWLRIGDVASVSYESGPPQIRRDDVQRRVVVQANVQGRDMGSVVQEIQSAI 855

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             + +   +          +  +   +K  + V +S + + + +++ F        +  + 
Sbjct: 856  SSRVDLPAGYTVQIGGQFESQQRAQKKLSLIVPLSLVLIAVLLYLAFN-SLGQAMLILIN 914

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + +    G F+L+  G   ++ +    +TL G +V + VV+ + +    +     ++   
Sbjct: 915  VPLAIIGGVFSLYLSGQYLSVPSSVGFITLFGVAVLNGVVMVESIN---QRVKGGMTVDS 971

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +       L   + T++ + + ++PM +    G  +    A  +  G+V A   ++F+ 
Sbjct: 972  AVFTGATSRLRPVLMTAVTSALGLVPMLMSNGVGAEIQRPLASVIVGGLVTATLLTLFVL 1031

Query: 817  APILLFIYDWRAKN 830
              +       +A N
Sbjct: 1032 PALYSVFSPKQAAN 1045



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 95/305 (31%), Gaps = 15/305 (4%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      V  +   +     +     +         + +  LA+      + +  +
Sbjct: 222 WYLERGQEQLVVRGTGWLASGEQGIHDIEQVPVKTVDGVVVTVSDLADVKTGPEIRQGAV 281

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
              Q          GE    + L+    ++ A    +      I + +P           
Sbjct: 282 TLSQRASDGKVEQFGEVVTGIVLKRMGANTKATIDGINSRVALINQALPEGVSFTPFYDQ 341

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA----LF 714
             +  + I   +  + I+ + + I + +   +   +GA   +++ I   +          
Sbjct: 342 ANLIEKAISTVVKALTIAFVFITIVLAL---FLMNVGATFLVLITIPIAIAMALAIMAFM 398

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-----YTTSISFRDLIDKSINETL 769
           G+  NL ++  +   IG  V+  VV+ + + K +       +  + SF+  +  +  E  
Sbjct: 399 GLSANLMSLGGIAVAIGMLVDGSVVMVENIFKRLNANTSSSHEDAQSFKSSVKLAGKEVA 458

Query: 770 GRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               + +    +   P+  + G    +    AI +   ++ A   ++F    +  F++  
Sbjct: 459 RPIFFAASIILVVFAPLFSFEGVEAKLFQPMAISIMLAVLCATVVALFFVPALATFLFKR 518

Query: 827 RAKNA 831
                
Sbjct: 519 TRNVK 523



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 61/510 (11%), Positives = 149/510 (29%), Gaps = 49/510 (9%)

Query: 26   FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
             +P+   +  P  + +  I+L         ++L        +  +    +E      +  
Sbjct: 563  LVPKIGTEFVPE-LEEGTINL--------RVILAPSSSLETSLAVASTLEEKLLAFPEVT 613

Query: 86   IGVFSM---RQIQN-------KITLSFADSRFKENI--ADKVTLFLQGVNSKLNVDPKK- 132
              +  +       +       +I +       +E+    D++   +Q   S+        
Sbjct: 614  YALSRIGRAEIGGDPEPVNNIEIYIGLKPVSKRESARNRDELQQKMQAELSQFPGLLLNF 673

Query: 133  -NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI-L 190
               + T  ++ +S V +Q  +          S +  R+    I   + T        +  
Sbjct: 674  SQPIATRVDELLSGVKAQLAVKLFGPDLAVLSAKG-REIESAIQNVKGTRDVAMEQIVGE 732

Query: 191  IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
             QL    D   L +   + + +                     R                
Sbjct: 733  AQLVIAPDRQALSRYGLSVSDIMEVVQDGVGGVAAGQIINGNERY--------------- 777

Query: 251  GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                     +    +            GA            +     +    +   V+ Q
Sbjct: 778  -DIYVRLKESARKSSDTIADIRLQSPSGAWLRIGDVASVSYESGPPQIRRDDVQRRVVVQ 836

Query: 311  AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            A   G+   S    I++A      L AG         E +       +         +  
Sbjct: 837  ANVQGRDMGSVVQEIQSAISSRVDLPAGYTVQIGGQFESQQ-----RAQKKLSLIVPLSL 891

Query: 371  GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
             L+ ++L++        ++   ++ L +I  +  L L G  L++PS  G +   G+AV +
Sbjct: 892  VLIAVLLYLAFNSLGQAMLILINVPLAIIGGVFSLYLSGQYLSVPSSVGFITLFGVAVLN 951

Query: 431  NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRG 487
             +++ E I +  +   +V  ++  G +     +  + +T+ +  V +      G    R 
Sbjct: 952  GVVMVESINQRVKGGMTVDSAVFTGATSRLRPVLMTAVTSALGLVPMLMSNGVGAEIQRP 1011

Query: 488  FAITMGLSILISMFTAISIVRAMMIFIIRY 517
             A  +   ++ +    + ++ A+       
Sbjct: 1012 LASVIVGGLVTATLLTLFVLPALYSVFSPK 1041


>gi|330960967|gb|EGH61227.1| acriflavin resistance protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 416

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 49/443 (11%), Positives = 114/443 (25%), Gaps = 35/443 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I  +G +           +   P+      +             L   
Sbjct: 9   RRPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q   +I L F   R     A +V   +  
Sbjct: 55  SPEIMASTVATPLERSLGSIAGVNTMTSNSSQGTTRIILQFDLDRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSSVLEKGQLYDLASTILSQSLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q   +   +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAITASNVRRPKGFVEDDLHNWQVQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 +   +    +  
Sbjct: 234 QLEKAAD--------------------YAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         LRA         +          +   
Sbjct: 274 FFNNDQAVLLVINRQAGANIIETVAQIKAQLPALRAVLPASVKLQIAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVILVILVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRK 444
           L  GL VD  I+V E I      
Sbjct: 394 LATGLVVDDAIVVLENISRHIHN 416



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/192 (12%), Positives = 57/192 (29%), Gaps = 3/192 (1%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
           F    +        +          L +       L +      S  + D     F    
Sbjct: 219 FVEDDLHNWQVQANDQLEKAADYAPLIIRYKDGATLRLKDVAKVSDAVEDRYNSGFFNND 278

Query: 616 NFLVRLQYQPGDSVAQT---RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             ++ +  +   +       ++   +      +     +Q      P I   L    +  
Sbjct: 279 QAVLLVINRQAGANIIETVAQIKAQLPALRAVLPASVKLQIAMDRSPVIKATLHEAEMTL 338

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   + +L+       +  +L     + + +  T     LFG   N  ++ A++   G 
Sbjct: 339 LIAVILVILVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGL 398

Query: 733 SVNDKVVVYDRM 744
            V+D +VV + +
Sbjct: 399 VVDDAIVVLENI 410


>gi|238762401|ref|ZP_04623372.1| Heavy metal efflux pump, CzcA family [Yersinia kristensenii ATCC
           33638]
 gi|238699386|gb|EEP92132.1| Heavy metal efflux pump, CzcA family [Yersinia kristensenii ATCC
           33638]
          Length = 1034

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 78/684 (11%), Positives = 175/684 (25%), Gaps = 50/684 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MRN   +++   M+   G+       L Q+ LD  P       I           +    
Sbjct: 1   MRNRLLVLLGAVMMAAWGVWS-----LQQTPLDALPDLSDTQVI---------IRVSYPG 46

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          +                + + F D         +V  +L 
Sbjct: 47  KAPQVVEDQVTYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFDDGTDPYWARSRVLEYLS 106

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S L  + K  L    T                     +           ++    + 
Sbjct: 107 QVQSTLPAEAKAALGPDATGVGWIYEY-ALIDRTGKHSLADLRALQDWTLKFELKTVPNV 165

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ Q     DP R+R L  +  +++      N    G +  +          
Sbjct: 166 SEVASVGGMVRQYQVVLDPERMRALNLSHQQIASAIADSNQEGGGSVLEMGAAEYMVRAS 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++                           +     G              P       
Sbjct: 226 GYLKT-------------------LDDFRNIVITVREGIPILLSDVATVRIGPEMRRGVA 266

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   I   +   +   TI         ++         +           +  
Sbjct: 267 ELNGEGEVAGGIIVMRYGKNALETINGVKEKLQQIQRSLPAGVEIVPVYDRSHLITQAID 326

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V ++  + + + +  LVA  ++ L ++    ++   G    + S+ GI
Sbjct: 327 SLSFKLLEEFLVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGI 386

Query: 421 VLGIGLAVDSNILV-------NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            + IG  VD+ I++        E+ R ++     V         +A   +  +   +L+ 
Sbjct: 387 AIAIGAMVDAAIVMIENMHKVLEQWRRDHPGQTPVSQDYWRISEQAAIEVGPALFCSLLI 446

Query: 474 TVVLFFF-------GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             + F          G      A T   ++ +S   AI++V  +M + IR K        
Sbjct: 447 ITLSFIPVFTLQAQEGRMFSPLAFTKTYAMAVSAGLAITLVPVLMGYFIRGKIPDENANP 506

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                  +   +    +      + I+ +  + ++  L   G  +      G  L + + 
Sbjct: 507 INRWLIALYHPVLTAVLARPKTTLAIAGMLLLATLYPLSRLGSEFMPALDEGDLLYMPST 566

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             +    VR     LQ  D   +          +       +      +     +     
Sbjct: 567 --LPGISVREASHLLQQTDRLIKTVPEVDTVFGKAGRAETATDPAPLTMIETTIRFKPKD 624

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
                   + +  ++   +   GI
Sbjct: 625 QWRPGMTMDKLIEELDATVKVPGI 648



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 89/263 (33%), Gaps = 16/263 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   +   V LS +     +     +  +N        V L+ +   S        + +
Sbjct: 777  PVVTASGGQVALSELADIKVTEGPPMLKSENARLSDWVYVDLRGRDLKSAVTDMQQAVAE 836

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +         +         + + +L     + + ++ + + + +++ F       A+  
Sbjct: 837  QVKLPEGVSLSWSGQFEYLERATAKLK----IVLPVTLMIIFVLLYVTFSSVRD-AALIM 891

Query: 700  LILDITKTLGFFALFGIEFNLTAVAA--VLTLIGYSVNDKVVVYDRMRKNMKLYTT---- 753
              L      G + L+G+ +N +  AA   + L G +    V++   + + +K +      
Sbjct: 892  ATLPFALIGGVWLLYGLGYNFSVAAAVGFIALAGVAAEFGVIMVLYLNQAVKKHQRPGIA 951

Query: 754  --SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVA 808
              +      I +     +     T       +LP+   GG    V+   A PM  G+V A
Sbjct: 952  MTASEMSAAIHEGAVLRVRPKAMTVATIMAGLLPIMWGGGTGSEVMQRIAAPMIGGMVSA 1011

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               S+ +   + + ++   +K  
Sbjct: 1012 PLLSMLVIPAVYMLLHKKESKQQ 1034



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 99/289 (34%), Gaps = 11/289 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S+L    +  ++   G    +D    I + V    P+ LS V +     ++     +   
Sbjct: 211 SVLEMGAAEYMVRASGYLKTLDDFRNIVITVREGIPILLSDVATVRIGPEMRRGVAELNG 270

Query: 613 GEK--NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
             +    ++ ++Y          V E +++    +     I         I++ +     
Sbjct: 271 EGEVAGGIIVMRYGKNALETINGVKEKLQQIQRSLPAGVEIVPVYDRSHLITQAIDSLSF 330

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +    +  +I     F +  AL AI TL L I          G+  N+ ++  +   I
Sbjct: 331 KLLEEFLVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAI 390

Query: 731 GYSVNDKVVV---YDRMRKNMKLYTTSISFRD-----LIDKSINETLGRSVYTSMAAFIS 782
           G  V+  +V+     ++ +  +      +        + +++  E       + +   +S
Sbjct: 391 GAMVDAAIVMIENMHKVLEQWRRDHPGQTPVSQDYWRISEQAAIEVGPALFCSLLIITLS 450

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+          F+ P+AF    A + S  +A  ++  +  +  +  
Sbjct: 451 FIPVFTLQAQEGRMFS-PLAFTKTYAMAVSAGLAITLVPVLMGYFIRGK 498


>gi|86157609|ref|YP_464394.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85774120|gb|ABC80957.1| Acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1038

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 52/464 (11%), Positives = 129/464 (27%), Gaps = 27/464 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                       V   +    ++  S +        S R+  + + + F  S        
Sbjct: 47  VTTTYPGASPGDVEENVTRPIEDAVSSIAGIDKVFSSSREDVSLVFIEFELSVPLGEAVQ 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +     +L +  +  ++         +++      Q     +    ++  Q   +
Sbjct: 107 NVRDKVGIAQGELPLGARAPVIAQYDVAAQPVLVFSAASGQ---DPVALREKLDDQVRPR 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   E             ++  +    RLR +      +       +    G  F     
Sbjct: 164 LEQLEGVAAVRIVGGAEPEVSVDLFRDRLRAVGLDPDAVFRRIQGEHLDLPGGKFPA--- 220

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                     E  + + G   +       P                          + K 
Sbjct: 221 -------GDGEVGIRVRGEFRDVDALRRMP---------VTAAQDGSLVRLAEVALVRKG 264

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                                 +A  +          L   L+A        +       
Sbjct: 265 AKEPKTLVRTDGVDAVAVEVVKQAGANSAAVANEVKRLLPELQAELGFRAQVL--VDQSV 322

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +             + ++++ + +L  +  +++  ++  +V+ TL ++  +G +L 
Sbjct: 323 IIEANAHEVWVAIFFGGAMAVLIILLFLLDVRGTVISALALPTSVVGTLFVMYWMGFSLN 382

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++ G+ L IGL +D  ++V E I       +    +   G       +  +  T +  
Sbjct: 383 QLTLLGLSLAIGLLIDDAVVVRESITRRLEAGEPPPVAASRGTQEIALAVMATTFTLVAV 442

Query: 474 TVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            V + F     G   R F +T+ +++LIS+F A ++   +    
Sbjct: 443 FVPVAFMQGITGQFFRQFGLTITVAVLISLFVAFTLDPMLSARF 486



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 76/247 (30%), Gaps = 9/247 (3%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
            ++ V A +   L  +       +           +    V ++           V   V
Sbjct: 240 RRMPVTAAQDGSLVRLAEVALVRKGAKEPKTLVRTDGVDAVAVEVVKQAGANSAAVANEV 299

Query: 639 KKKITEIVPLSTIQNTEIVGPKIS-RELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGA 696
           K+ + E+      +   +V   +       +  V +    A+A+LI +         + +
Sbjct: 300 KRLLPELQAELGFRAQVLVDQSVIIEANAHEVWVAIFFGGAMAVLIILLFLLDVRGTVIS 359

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L   +  TL      G   N   +  +   IG  ++D VVV + +    +       
Sbjct: 360 ALALPTSVVGTLFVMYWMGFSLNQLTLLGLSLAIGLLIDDAVVVRESI---TRRLEAGEP 416

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
                 +   E     + T+       +P+A      G     F + +   ++++   + 
Sbjct: 417 PPVAASRGTQEIALAVMATTFTLVAVFVPVAFMQGITGQFFRQFGLTITVAVLISLFVA- 475

Query: 814 FIAAPIL 820
           F   P+L
Sbjct: 476 FTLDPML 482



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 79/231 (34%), Gaps = 11/231 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            PV L+ +     S     I  Q  +   +   ++        A   +   V  +     
Sbjct: 774 GPVALAQLARLERSTSPAVIEHQRRERSISVWAQIAPGYDLGGAVQALRAKVGARPLPAG 833

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                   +    +          + ++I+ + + I +  +F+ +      + +L L I 
Sbjct: 834 YAYIWDGMQKEQAESQA----NMGMALLIAVVFIFIVLASQFESFVHPFTIMLSLPLAIV 889

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +    + G   NL ++  ++ L+G    + +++ D     ++           + +S 
Sbjct: 890 GAVLGLGIAGQTVNLGSLIGIILLMGLVTKNAILLVD---GALQHLREGDDPETAVRRSG 946

Query: 766 NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
              L   + TS A  + +LP A+    G       AI +  G++ +   ++
Sbjct: 947 PRRLRPILMTSGAMILGMLPTALGKGMGSEFRAPMAIAVIGGVITSTMLTL 997


>gi|330504080|ref|YP_004380949.1| acriflavin resistance protein [Pseudomonas mendocina NK-01]
 gi|328918366|gb|AEB59197.1| acriflavin resistance protein [Pseudomonas mendocina NK-01]
          Length = 1051

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 67/563 (11%), Positives = 150/563 (26%), Gaps = 28/563 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
             + LE    +     L    ++    L+          +    + L F      +    
Sbjct: 48  VSVTLEGISPEDGERLLVRPLEQELRSLEGVKEMRSMSSEGHASVILEFDAGFDAKVALA 107

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +    SKL  +  +  +         ++    +     +  +     I R+  + 
Sbjct: 108 DVREKVDTARSKLPEEADEPTVNEVNVALFPVLSVGLSGPIAETELV----YIARRLKEN 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I      +           L    DP  L        ++                     
Sbjct: 164 IEGIAEVLSVEIGGDREDLLEIVVDPQVLDSYGIDYNELFNLV----------------- 206

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                N  LV      +G            +  + V+ +    +G           I + 
Sbjct: 207 ---SRNNRLVAAGSLDTGAGRMSMKVPGVIEDLEDVMRMPIKVVGDSVVTFADVATIRRT 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                    +          + ++  +   TI+    L    +    P            
Sbjct: 264 FKDPTGFARINGQPAIVLEVAKRSGANIIETIDQVKALMERAKPLLPPGVEVSYIMDQSQ 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                             LVLI++   +      L+   +I    +  + L+ +LG TL 
Sbjct: 324 EVQSMLGDLLNNVLTAIVLVLILVVASMGMR-SALLVGLTIPGAFLSGILLIWMLGFTLN 382

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           +  +  ++L  G+ VD  I+V+E      ++ Q+   +     +R    +  S  T L+ 
Sbjct: 383 IVVLFSLILVAGMLVDGAIVVSELADRYLQQGQTPRQAWANAATRMAWPVIASTATTLVV 442

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F+    G  ++    T+ L +L S+  A+  +  +          ++   N    
Sbjct: 443 FLPLLFWPGVVGQFMKYLPATVILCLLASLAMALIFLPVLGAVTGGQAHPQAASANRAGN 502

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            +       ++       G+   I                +        Q+ V A   + 
Sbjct: 503 AYRNLLATLLKRPGLTLLGMLALIALIYVGYGRFNHGVEFFPDVEPESAQIWVRARGDLS 562

Query: 591 LSVVRSNLESLQIGDISFQNFDG 613
           +    + L+ ++   I       
Sbjct: 563 VQEKDALLQQVEKQVIGMPEVKA 585



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 90/256 (35%), Gaps = 10/256 (3%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            ++    + + V+ +  V  + V +   + +      +        L   +    + +  
Sbjct: 235 DLEDVMRMPIKVVGDSVVTFADVATIRRTFKDPTGFARINGQPAIVLEVAKRSGANIIET 294

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              ++ + ++   ++P     +  +   +  + ++   +  V+ + + +LI +       
Sbjct: 295 IDQVKALMERAKPLLPPGVEVSYIMDQSQEVQSMLGDLLNNVLTAIVLVLILVVASMGMR 354

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNM 748
            AL    T+       +    + G   N+  + +++ + G  V+  +VV    DR     
Sbjct: 355 SALLVGLTIPGAFLSGILLIWMLGFTLNIVVLFSLILVAGMLVDGAIVVSELADRY---- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                  + R     +        + ++    +  LP+  W G V+G F   +   +++ 
Sbjct: 411 --LQQGQTPRQAWANAATRMAWPVIASTATTLVVFLPLLFWPG-VVGQFMKYLPATVILC 467

Query: 809 ASSSIFIAAPILLFIY 824
             +S+ +A   L  + 
Sbjct: 468 LLASLAMALIFLPVLG 483



 Score = 51.2 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 88/257 (34%), Gaps = 26/257 (10%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            SN   LQ           + +  + LQ    +       L+ +++ +      + +Q   
Sbjct: 774  SNFVDLQPAPKVGTLRRVDGDRTITLQADLAEGARLDERLKALREAL--GDVPAEVQVKF 831

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF-FALF 714
                   RE     +   +++   M I +  +F   +    + + I  +  T G    L 
Sbjct: 832  AGEDADQREAATFLMTAFVVAIFLMAIILVTQFNSLYQAALVLSAI--VLSTAGVLMGLL 889

Query: 715  --GIEFNLTAV-AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G  F +  V   ++ L G  VN+ +++ D      +L    +  R+   ++    L  
Sbjct: 890  VNGQSFGIVMVGMGLIALAGIVVNNNIILIDTYN---QLRRQGLEPREAALETGCLRLRP 946

Query: 772  SVYTSMAAFISVLPMAV------------WGGSVIG---SFAIPMAFGIVVAASSSIFIA 816
             + T++   + ++PM +            +G          +  +A G+  A   ++ + 
Sbjct: 947  VLLTAVTTILGLMPMVLSINVDLVTPSLGFGAPSTQWWTQLSSAIAGGLAFATVLTLLLT 1006

Query: 817  APILLFIYDWRAKNARI 833
              +L+    +  +   +
Sbjct: 1007 PCMLVLGARFERRPPPL 1023


>gi|332977807|gb|EGK14564.1| protein-export membrane protein SecD [Desmospora sp. 8437]
          Length = 426

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 132/420 (31%), Positives = 209/420 (49%), Gaps = 30/420 (7%)

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
            I   V L  Q V +++ +            +   +        ++ +  +  + + + +
Sbjct: 30  AILVIVALTGQQVANRITLGLDLQGGFEVLYEAKPL----EKGQKITASTLSDAAQAVSR 85

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
           RID +G+SE  I   G+ RI +QL G  DP + R++LG  A ++F        KK  M G
Sbjct: 86  RIDVLGVSEPQISVEGNDRIRVQLAGVTDPDKAREILGKPAVLTFRAPD---GKKVLMRG 142

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                      Y    +  +S                             + F + T++ 
Sbjct: 143 TDLKEGGATQDYNENGQPIVS-----------------------VKFKDPKLFAKYTKEY 179

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +G+P+ + LD + L++PVI   I  G AQISGNFT E A  LA +L AG+LP+ L   + 
Sbjct: 180 LGQPMPIYLDKQELSSPVIRDVIAGGNAQISGNFTTEEAKELANLLNAGALPVNLKEKQS 239

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
             V + LG +S+ K   A V  L++I +FMI  Y   GLVA  ++     L L + SLL 
Sbjct: 240 FAVDSTLGKESLMKSMEAGVYALLIIFIFMIGYYRLPGLVAVVTLVAYGYLVLLIFSLLH 299

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            TLTLP IA  +LG+G+AVD+NIL+ ERI++E R  +SV  +   G  R++ TIFD+NIT
Sbjct: 300 VTLTLPGIAAFILGVGMAVDANILMYERIKDEMRHGKSVLSAFKSGSRRSFLTIFDANIT 359

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
            +IA  VLF+FG   VRGF++++   IL+S  TA+ + R ++  +++    +      + 
Sbjct: 360 TVIAAAVLFYFGTAGVRGFSVSLITGILVSFLTAVGLSRILLNLLVKSSLFRHPKWFGVK 419



 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 90/259 (34%), Gaps = 8/259 (3%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ----YQPG 626
              +  G   + V    P   +          +     +           +        G
Sbjct: 152 QDYNENGQPIVSVKFKDPKLFAKYTKEYLGQPMPIYLDKQELSSPVIRDVIAGGNAQISG 211

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
           +   +             +      + +  V   + +E + K +   + + + + I++  
Sbjct: 212 NFTTEEAKELANLLNAGALPVNLKEKQSFAVDSTLGKESLMKSMEAGVYALLIIFIFMIG 271

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            ++    L A+ TL+      L  F+L  +   L  +AA +  +G +V+  +++Y+R++ 
Sbjct: 272 YYRLP-GLVAVVTLVAYGYLVLLIFSLLHVTLTLPGIAAFILGVGMAVDANILMYERIKD 330

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            M+      S           +       ++   I+   +  +G + +  F++ +  GI+
Sbjct: 331 EMR---HGKSVLSAFKSGSRRSFLTIFDANITTVIAAAVLFYFGTAGVRGFSVSLITGIL 387

Query: 807 VAASSSIFIAAPILLFIYD 825
           V+  +++ ++  +L  +  
Sbjct: 388 VSFLTAVGLSRILLNLLVK 406



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 49/407 (12%), Positives = 112/407 (27%), Gaps = 34/407 (8%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----D 63
           VI   ++  I +++AL                  NRI+LGLDL+GG  ++ E        
Sbjct: 22  VIFSLLVIAILVIVALTGQQV------------ANRITLGLDLQGGFEVLYEAKPLEKGQ 69

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGV 122
                 L   +  +   +   G+    +  +  ++I +  A     +   + +       
Sbjct: 70  KITASTLSDAAQAVSRRIDVLGVSEPQISVEGNDRIRVQLAGVTDPDKAREIL------- 122

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                      L     + +  ++      D     A +   E  +  +           
Sbjct: 123 ------GKPAVLTFRAPDGKKVLM---RGTDLKEGGATQDYNENGQPIVSVKFKDPKLFA 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
           +     +   +P   D   L   +        +  +  N        +  L ++      
Sbjct: 174 KYTKEYLGQPMPIYLDKQELSSPVIRDVIAGGNAQISGNFTTEEAKELANLLNAGALPVN 233

Query: 243 V-EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           + E +       L   +     +     + I F  M            +       L   
Sbjct: 234 LKEKQSFAVDSTLGKESLMKSMEAGVYALLIIFIFMIGYYRLPGLVAVVTLVAYGYLVLL 293

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           + +   +   +P   A I G      A IL        +    +++     G+     +I
Sbjct: 294 IFSLLHVTLTLPGIAAFILGVGMAVDANILMYERIKDEMRHGKSVLSAFKSGSRRSFLTI 353

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           +      V    ++  F       + +     I ++ +  + L  +L
Sbjct: 354 FDANITTVIAAAVLFYFGTAGVRGFSVSLITGILVSFLTAVGLSRIL 400


>gi|302391495|ref|YP_003827315.1| protein-export membrane protein SecD [Acetohalobium arabaticum DSM
           5501]
 gi|302203572|gb|ADL12250.1| protein-export membrane protein SecD [Acetohalobium arabaticum DSM
           5501]
          Length = 406

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 126/379 (33%), Positives = 223/379 (58%), Gaps = 26/379 (6%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +        +V + ++++ + +I +R++Q+G++E  IQR G  RI+++LPG ++P++ 
Sbjct: 44  VVLEAEPTEQSKVTNDSMQRVISVINRRVNQMGLTEPVIQREGDRRIIVELPGVENPNQA 103

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            + +G TA++ F                               +V ++G HL  A A + 
Sbjct: 104 IETIGKTAQLKF--------------------------KDPNGEVVMTGGHLVDAQATYG 137

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
            + ++PV+    D +G  +F ++T+ ++G+ +A+ LD  +LT P +   IP G+  I+G 
Sbjct: 138 TQFNQPVIQFELDSVGKDKFAQLTKKHVGERIAIHLDEELLTNPQVQDPIPGGEGIITGY 197

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T+E A   A +LRAG+LP+ + +++ R +G  LG+ SI +   A + GL L+ L MI+L
Sbjct: 198 ETLEEAQEDALLLRAGALPMPVKVIQNRTIGPTLGARSIDQSITAGLIGLALVALLMIIL 257

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G VA  ++ +  ++ +  L+ L ATLTLP IAG++L IG+AVD+NI++ ER+++E 
Sbjct: 258 YRLSGAVATVALGIYGVIVMGTLAGLNATLTLPGIAGLILSIGMAVDANIIIFERVKQEL 317

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
              ++   ++  GF RAY TIFD+N+T LI   +L +FG G +RGFA+T+ + IL SMFT
Sbjct: 318 GAGKTKRAAIKSGFERAYKTIFDANVTTLITAGILAYFGTGTIRGFAVTLSIGILASMFT 377

Query: 503 AISIVRAMMIFIIRYKKMK 521
           AI + R ++  ++    +K
Sbjct: 378 AIVVTRTLVDLLLDANLLK 396



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 79/203 (38%), Gaps = 4/203 (1%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +    + +  +   +     +     +GP +    I + I   +I    + +
Sbjct: 193 IITGYETLEEAQEDALLLRAGALPMPVKVIQNRTIGPTLGARSIDQSITAGLIGLALVAL 252

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            + I ++   A+ A   L +     +G  A       L  +A ++  IG +V+  +++++
Sbjct: 253 LMIILYRLSGAV-ATVALGIYGVIVMGTLAGLNATLTLPGIAGLILSIGMAVDANIIIFE 311

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+++ +    T    R  I              ++   I+   +A +G   I  FA+ ++
Sbjct: 312 RVKQELGAGKTK---RAAIKSGFERAYKTIFDANVTTLITAGILAYFGTGTIRGFAVTLS 368

Query: 803 FGIVVAASSSIFIAAPILLFIYD 825
            GI+ +  ++I +   ++  + D
Sbjct: 369 IGILASMFTAIVVTRTLVDLLLD 391



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 43/132 (32%), Gaps = 19/132 (14%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++       I     LP                   I+LGLDL+GG+H+VLE + 
Sbjct: 6   KKLLKIVGIMAAVIIAAYFLLP---------------INEAINLGLDLQGGTHVVLEAEP 50

Query: 63  DD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
            +     N  +Q     +   + + G+    +++  + +I +            + +   
Sbjct: 51  TEQSKVTNDSMQRVISVINRRVNQMGLTEPVIQREGDRRIIVELPGVENPNQAIETIGKT 110

Query: 119 LQGVNSKLNVDP 130
            Q      N + 
Sbjct: 111 AQLKFKDPNGEV 122


>gi|86609216|ref|YP_477978.1| preprotein translocase subunit SecD [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86557758|gb|ABD02715.1| protein-export membrane protein SecD [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 448

 Score =  134 bits (336), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 86/224 (38%), Gaps = 4/224 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+ + I                      G+   +T     VK +   +     +     V
Sbjct: 206 LDDVLISAPIVGPEFARTGITGGTAVITGNFTVETATDLAVKLRAGALPVPIQVIENRTV 265

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  +    +R+ +   I   + + +++   ++    L A   L++    T   F L G+ 
Sbjct: 266 GATLGEVSVRRSLYAGIGGLVLVFLFMVAYYRLP-GLIADIALLIYALCTFALFQLLGVT 324

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R+++ ++      S    I +  N      + +++
Sbjct: 325 MTLPGIAGFILSIGMAVDANVLIFERIKEELRA---GKSIYKSISEGFNRAFSSILDSNV 381

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
              +    +   G  ++  FA+ +  GI+V+  ++I     +LL
Sbjct: 382 TTLLVCGVLFWLGMGLVKGFAVTLGIGILVSFFTAITCTRSLLL 425



 Score =  134 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 138/420 (32%), Positives = 227/420 (54%), Gaps = 10/420 (2%)

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  V    + + +  L +    +     +    + ++    ++    +I+QRI+ +G++E
Sbjct: 26  VALVYLGFSREVRLGLDLKGGTQLTLQAVPTEEVPEITPEVMQGVEAVIQQRINGLGVAE 85

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
             +Q  G  R+ +QLPG  DP R   LLG TA++ F                R    +  
Sbjct: 86  PLVQISGQDRLFVQLPGVADPDRAIALLGDTAQLEFR--KGLVPVGALPRNERGEITAGE 143

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHK-PVVDISFDEMGARRFFEVTRDNIGKPLA-- 295
           +   + ++V ++G  L  A      +  +   V + F   GA +F ++TRD  G      
Sbjct: 144 DPDTLFERVGLTGDLLRNAYPQAPRRGSQSWEVLLEFKPEGAEKFTQLTRDLAGTERPLG 203

Query: 296 -----VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                V++   ++        I  G A I+GNFT+ETA  LA  LRAG+LP+ + ++E R
Sbjct: 204 IFLDDVLISAPIVGPEFARTGITGGTAVITGNFTVETATDLAVKLRAGALPVPIQVIENR 263

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
            VGA LG  S+ +   A + GLVL+ LFM+  Y   GL+AD ++ +  + T AL  LLG 
Sbjct: 264 TVGATLGEVSVRRSLYAGIGGLVLVFLFMVAYYRLPGLIADIALLIYALCTFALFQLLGV 323

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           T+TLP IAG +L IG+AVD+N+L+ ERI+EE R  +S++ S+  GF+RA+S+I DSN+T 
Sbjct: 324 TMTLPGIAGFILSIGMAVDANVLIFERIKEELRAGKSIYKSISEGFNRAFSSILDSNVTT 383

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           L+   VLF+ G G V+GFA+T+G+ IL+S FTAI+  R++++  +    ++  +   +  
Sbjct: 384 LLVCGVLFWLGMGLVKGFAVTLGIGILVSFFTAITCTRSLLLAAMGIPSLRKPEFYGVRM 443



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/263 (9%), Positives = 70/263 (26%), Gaps = 36/263 (13%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R +    +++ +   + L+    +                  + LGLDL+GG+ L L+  
Sbjct: 11  RLSFLRGLIFILAVVVALVYLGFS----------------REVRLGLDLKGGTQLTLQAV 54

Query: 61  ---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVT 116
              +  +     +Q     ++  +   G+    ++   Q+++ +        +     + 
Sbjct: 55  PTEEVPEITPEVMQGVEAVIQQRINGLGVAEPLVQISGQDRLFVQLPGVADPDRAIALLG 114

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
              Q    K  V           E      ++       +   +  + +++R    Q   
Sbjct: 115 DTAQLEFRKGLVPVGALPRNERGE------ITAGEDPDTLFERVGLTGDLLRNAYPQAPR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                          ++  E  P    +    T  ++  +          +     +   
Sbjct: 169 ---------RGSQSWEVLLEFKPEGAEKFTQLTRDLAGTERPLGIFLDDVLISAPIVGPE 219

Query: 237 DGNQYLVEDKVEISGIHLNGATA 259
                +      I+G        
Sbjct: 220 FARTGITGGTAVITGNFTVETAT 242


>gi|95931214|ref|ZP_01313935.1| acriflavin resistance protein [Desulfuromonas acetoxidans DSM 684]
 gi|95132733|gb|EAT14411.1| acriflavin resistance protein [Desulfuromonas acetoxidans DSM 684]
          Length = 1034

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 74/547 (13%), Positives = 160/547 (29%), Gaps = 41/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +   MI   G++      L +  +   P                         
Sbjct: 9   KKPVSVAVFVIMILMFGII-----GLNKLPVQLTPDVELPEIT---------VTTTWPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++    L+       S       I+L F      +N   +V   L  
Sbjct: 55  TPYDIEQEIIEDQEDALKGLQNLISLESSSYNNYGTISLVFKVGVDIDNALLRVANKLDE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ-IGISEST 180
           V      +  K ++         ++       Q     I+Q        ++Q +   +  
Sbjct: 115 V-GDYPENVDKPIIEAAGANSSPVIWLLLKTKQGNETPIDQYRTFYDNEVEQHLERIDGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      +L    D  ++ +   T ++++      N +       +          
Sbjct: 174 GSLFVGGGTEKELQVVVDREKMARHNITISQVTHSLQQANENTSAGNLSIGKKDYRIRTV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              +++ +                     +D+   + G +R +        +        
Sbjct: 234 SRFQNETD--------------------PLDVVLVDDGIKRVYLRDVATTQEGFEKRTFA 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK--LNIVEERNVGADLGS 358
                          +   +    ++ A      L AG L                   +
Sbjct: 274 VQNNGKPCIVVGIRKEKGANVIDLVQRAHETIDELNAGLLADNGLTFDWVYDQTPYINTA 333

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            SI K    I   L ++VL + +       +   +I ++VI T   L +    L + S+A
Sbjct: 334 ISIVKQNALIGGLLAIVVLLVFLRSVSGTAITAIAIPVSVIGTFISLWVFHRNLNVVSLA 393

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           GI   IG+ VDS I+V E I    +  +  F +   G S  +  +  S  T +   + + 
Sbjct: 394 GISFAIGMLVDSAIVVLENIDRHRQMGKKAFDAALDGASEVFGAVLASTATTVAVFLPVI 453

Query: 479 FF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F     G   R  AI +  +IL+SM  ++ ++  +   +   + +     + + RF    
Sbjct: 454 FIEQEAGQLFRDIAIAITFAILLSMIVSLVVIPCLANLVYGRRPVIKQKTDRIGRFGQRF 513

Query: 536 DCIAIQF 542
               ++F
Sbjct: 514 VDGIMRF 520



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 69/209 (33%), Gaps = 8/209 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                   A   + E+    + +          +      +  ++++    +I   +A++
Sbjct: 293 NVIDLVQRAHETIDELNAGLLADNGLTFDWVYDQTPYINTAISIVKQ--NALIGGLLAIV 350

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +               + + +  T     +F    N+ ++A +   IG  V+  +VV 
Sbjct: 351 VLLVFLRSVSGTAITAIAIPVSVIGTFISLWVFHRNLNVVSLAGISFAIGMLVDSAIVVL 410

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFA 798
           + +    +         D      +E  G  + ++       LP+       G +    A
Sbjct: 411 ENI---DRHRQMGKKAFDAALDGASEVFGAVLASTATTVAVFLPVIFIEQEAGQLFRDIA 467

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           I + F I+++   S+ +   +   +Y  R
Sbjct: 468 IAITFAILLSMIVSLVVIPCLANLVYGRR 496



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 80/225 (35%), Gaps = 15/225 (6%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               L             T  +E +  ++ +   L   Q           E        ++
Sbjct: 809  NITLQVTPSADIPLQQATETIEGLVAQLRKGGKLDGTQIFIGGNADKLVETREALQWNLL 868

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL-----FGIE--FNLTAVAAV 726
            ++ +   + + + F+ +++ L  I    + +    GF  L     F     F++  +   
Sbjct: 869  LALVITYLLMAVLFENFFYPL--IIMFSVPLAAAGGFIGLKAVNLFVAPQGFDILTMLGF 926

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG  VN+ +++  +   N++     +   D I +S+   +     ++  +   +LP+
Sbjct: 927  IILIGTVVNNAILIVHQSLNNVRFE--GMKGIDAIRESVRTRIRPIFMSTTTSLFGLLPL 984

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             +    G  +       +  G++V+   ++F+   +L F      
Sbjct: 985  VLSTGAGSELYRGIGSVLLGGLLVSTVFTLFVIPALLAFFIHRER 1029


>gi|168186784|ref|ZP_02621419.1| putative RND efflux transporter [Clostridium botulinum C str.
           Eklund]
 gi|169295280|gb|EDS77413.1| putative RND efflux transporter [Clostridium botulinum C str.
           Eklund]
          Length = 1039

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 56/593 (9%), Positives = 165/593 (27%), Gaps = 40/593 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++    + L  +I   GL                P A       L +   GG+       
Sbjct: 10  KHRKITIFLTVLILVFGL-----GIYRVIPKQENPDASVGIARVLTI-YPGGT------- 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  S +          +   + + +   D+   +    ++   +  
Sbjct: 57  -PEDVKNLVTKKLEDAASEIDGFDYVESYSKNSVSVLIVYLKDTADDDKAWRELRDKIND 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +   + + T       +++S +  +         + EI R+    +   E   
Sbjct: 116 KKSELPAECFPSQINTDLVSTAGMIISLSGDNYSYDQLDSYAEEINRR----LSKIEGVT 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 ++  Q+  + D  +L+    +   ++    + N          +  +       
Sbjct: 172 SFDIDGKLDKQVKVDVDMDKLKNYPISLEDVTKALKVQNIKIPPGAIESKTSKIDVITSN 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +I                    V +   E             I           
Sbjct: 232 GFDSIKDIEN------------------VVVYVSEDTGAIVRLKDIAKIYMDYNQDDVKY 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +     +        ++                     + S 
Sbjct: 274 KQDGKKSILLTGHFEDNKNVVLIGKDVRKEIEAIKKTLPNDLNFYEVLYQPTDVDNAVSD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
           +         LV++V+F  V      +V   ++ ++++L+  ++   G  +   S   ++
Sbjct: 334 FMTNLIEGIILVIVVIFAGVGVRNS-IVVSTALPISILLSFIMMHFAGIKVHQISTMALI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G+ VD+ I++++ ++ +  +      +   G   +   IF S +T + +   L    
Sbjct: 393 IALGILVDNAIVISDVVQVKINQGIDNVTAALEGAKESSIPIFTSTLTTVASFAPLLTIP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +        + +S++ S   A+ I  A+     +                   + +
Sbjct: 453 GVPGKYVESIPKVVIISLIASYICAMLITPALAAVFYKKADDGKQGKVMKKVEKFFENAL 512

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                + +   +    + ++ +          +    K  + +     +  D+
Sbjct: 513 TFGLKKRKLTILIAVGMLAVAAFITTTLGLQFFPYANKNMMYINTTIEKKGDI 565



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/137 (14%), Positives = 54/137 (39%), Gaps = 5/137 (3%)

Query: 689  KWYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +        T+ L +     G F +F    +L A+  +++L+G  V + +++ + +   
Sbjct: 874  SFLQPFIIFLTIPLSLIGSAFGLF-IFRQPLSLMALMGIVSLVGVVVKNAILLIEYIN-- 930

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
             K      S  D    ++ +     + ++    + + P+   G  +    A+ +  G++V
Sbjct: 931  -KARKEGYSLNDSCMDAMKKRFSPIILSAFTTVMGLAPIIPSGNPMFVPMAVALMCGLIV 989

Query: 808  AASSSIFIAAPILLFIY 824
            +   ++ I   +   I 
Sbjct: 990  STLLTLIIIPVLYNLIE 1006


>gi|298372499|ref|ZP_06982489.1| AcrB/AcrD/AcrF family protein [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275403|gb|EFI16954.1| AcrB/AcrD/AcrF family protein [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 1057

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 57/597 (9%), Positives = 161/597 (26%), Gaps = 49/597 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +++  I   G+         +  +D+FP+                         
Sbjct: 10  KPITTALIFVGIIVFGVFS-----FSKLPIDQFPAMDIPYV---------SIMTTYPGAN 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +   + +          +   + ++L     +  +   + V   +  V
Sbjct: 56  GSEIETNVTKVLENSLNSVDGLKEITSQSKDNISVVSLQLNWGQNLDESVNDVRSAIDMV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N  L     + ++   +     I+       +  +   +    +    +  +   +    
Sbjct: 116 NDNLPDGCSRPMIFKFSTSNFPIMQYAITAKESYAGLEKI---LEDNVVSVLNRIDGIGN 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +  + D S+L     +  ++                          N   
Sbjct: 173 ISLSGTPERYIYIDLDQSKLDAYKISVEQIGQAISA--------------------NNLN 212

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +       G          +      + +I       +  F     N+   +  V     
Sbjct: 213 LASGSIKMGKEQYQLRVQSEYVESSEINNIVVANRLGKNIFVKDLANVRDTIRDVNLDER 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAM-LRAGSLPIKLNIVEERNVGADLGSDSI 361
           +      + +   +   +    ++    +    +  G  P     +   +      S   
Sbjct: 273 INGQNGVRMVIMKQTGANTVAIVKKVKKMMTEDIMPGLPPDIKAQIIYDSAQTIQNSIDG 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +    V +V+   +   +  L+   SI +++I     L +  +++ + S+A + 
Sbjct: 333 LSEAVMLAFVFVALVVMFFLGRWRATLIIVLSIPISLICAFIYLFVADSSINIISLASLT 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G+ VD  I+V E I     +      +     +  + ++  + +  +   + L   G
Sbjct: 393 VAVGIVVDDAIVVLENIMRHIERGSRPREAAIYATNEVWVSVIATTMVIVAVFLPLTMLG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRA--------MMIFIIRYKKMKSIDINPLSR 530
           G      +     + + I +S   AI++               I    +++ I  N    
Sbjct: 453 GQAGIIFKEMGWIVSICITVSATVAIALTPMLSSLLLKSKKEIINEKGEVEEISTNANWY 512

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
              +   +A                  + S+  L    + +   F G I    +A +
Sbjct: 513 ENTVMKWLAALDKWYANLLRWCLGHKLVTSLIALAVVIIGFLPVFMGKIGFNFMAQQ 569



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 90/232 (38%), Gaps = 9/232 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL+ VR  +  + + +    N       ++  Q          +V +M+ + I   +P  
Sbjct: 256 DLANVRDTIRDVNLDE--RINGQNGVRMVIMKQTGANTVAIVKKVKKMMTEDIMPGLPPD 313

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTL 708
                     +  +  I      V+++ + + L+ ++   +W   L  + ++ + +    
Sbjct: 314 IKAQIIYDSAQTIQNSIDGLSEAVMLAFVFVALVVMFFLGRWRATLIIVLSIPISLICAF 373

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            +  +     N+ ++A++   +G  V+D +VV + +   M+        R+    + NE 
Sbjct: 374 IYLFVADSSINIISLASLTVAVGIVVDDAIVVLENI---MRHIERGSRPREAAIYATNEV 430

Query: 769 LGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAA 817
               + T+M      LP+ + GG    +       ++  I V+A+ +I +  
Sbjct: 431 WVSVIATTMVIVAVFLPLTMLGGQAGIIFKEMGWIVSICITVSATVAIALTP 482



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 84/256 (32%), Gaps = 9/256 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +    P    +    L  +             +  +V +   P  +          +  
Sbjct: 790  EMTLQTPTGSLIKVKELAKVSEFWAPPTIDHKRRQRIVSVSVTPAGTSLLELANAAREIA 849

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                +P   + N               G + ++I  + + I +  +F+ +     I    
Sbjct: 850  RGIDLPQGVVINVGGTYEDQMEMSRDMGSLMLLI-ILLVYIVMASQFESFSKPFLILLGS 908

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +       F ALF  G E  +  +  ++ L+G  V + +V+ D +     +        +
Sbjct: 909  IPFAFAGAFLALFITGQELEMVGMLGMILLVGIVVKNGIVLVDYIN---LMRDRGYELNE 965

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I  S    L   + T++ A + ++PMA+    G  +     I +  G++ A   ++ I 
Sbjct: 966  AIALSGESRLRPVLMTAITAILGMVPMALSTAEGSEIWIPLGIVVIGGLLFATVVTLVIV 1025

Query: 817  APILLFIYDWRAKNAR 832
              +   +     ++ +
Sbjct: 1026 PVLYALMSRHGERDKK 1041


>gi|189426128|ref|YP_001953305.1| heavy metal efflux pump, CzcA family [Geobacter lovleyi SZ]
 gi|189422387|gb|ACD96785.1| heavy metal efflux pump, CzcA family [Geobacter lovleyi SZ]
          Length = 1045

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 82/605 (13%), Positives = 172/605 (28%), Gaps = 46/605 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +++L+ +I   GL         ++ +D  P       I                 
Sbjct: 11  RNRVVVLMLFGLITAWGLWAV-----YKTPVDAIPDLSDNQVI---------VFTDYPGR 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          L +      S     + I + F D         +V   L  
Sbjct: 57  SPQVVEDQVTYPLATNLQGLPQVRAVRASSAFGFSMIYVIFEDKTDIYWARTRVLERLNY 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       L    T        +       +          +R    Q+       
Sbjct: 117 AASLLPAGVVPTLGPDGTGVGHVFWYTIEGKGYDLEQLRTLQDWFVRY---QLNTVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +   + DP++L+    ++AK+       N    G +            Q 
Sbjct: 174 EVASIGGLVREYQIDLDPTKLQAYSISSAKVMEALKGSNKDVGGRLIEQADAEYLIRGQG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   ++                    V +  D  G   + +                 
Sbjct: 234 YVKSLADLEN------------------VVVGVDMRGTPIYVKNLGTVQLGGAIRRGMLD 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I   +   +    I+        L+ G  P     V          + + 
Sbjct: 276 LNGQGEAVGGIVVMRYGENAKDVIDRVKEKIEALKKGLPPGVTIQVAYDRSDLIERAITT 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K      + +V +V+   +L+ +  LV   ++ + V+++   + L+G T  + S+ GI 
Sbjct: 336 LKHALTEESIVVSLVILAFLLHFQSSLVIVLTLPIAVLISFITMKLMGVTSNIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + IG+ VD+ +++ E             +       +     +    IF S    +++ V
Sbjct: 396 IAIGVLVDAGVIMVENCYRRLSELSEEERKAQRLEVVIASAKQVGRAIFFSLAIIVLSFV 455

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   S++ S F AI++V  +M + +R K  +       + F 
Sbjct: 456 PVFLLEGQEGKLFHPLAFTKTFSMIGSAFIAITLVPVLMYYFMRGKMPREESNPVSTFFI 515

Query: 533 LIPDC--IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            +       +   +     + I  L     + +         +D    + + V       
Sbjct: 516 RLYSPVIRWVLVWKKTTIALNIVALLVAVPLFMRLGSEFMPPLDEGSLLYMPVTLPNVSI 575

Query: 591 LSVVR 595
               R
Sbjct: 576 TEAKR 580



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 60/161 (37%), Gaps = 6/161 (3%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S +  L+ +     +  +L  + TL + +  +     L G+  N+ ++  +   IG  V+
Sbjct: 344 SIVVSLVILAFLLHFQSSLVIVLTLPIAVLISFITMKLMGVTSNIMSLGGIAIAIGVLVD 403

Query: 736 DKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             V++ +   R    +          +++  S  +      ++     +S +P+ +  G 
Sbjct: 404 AGVIMVENCYRRLSELSEEERKAQRLEVVIASAKQVGRAIFFSLAIIVLSFVPVFLLEGQ 463

Query: 793 ---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +    A    F ++ +A  +I +   ++ +    +   
Sbjct: 464 EGKLFHPLAFTKTFSMIGSAFIAITLVPVLMYYFMRGKMPR 504



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 70/195 (35%), Gaps = 11/195 (5%)

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAITTLILDITKTL 708
                      +   ++  K  + +++    ++I+I + F ++ AL  ++  L +      
Sbjct: 844  PPGYYVAWSGQWENQVRAKARLQLLVPLGMVIIFILLYFTFHSALEASMVMLSVPFALVG 903

Query: 709  GFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY-----TTSISFRDLI 761
            G +  A  G   ++      + L G +V   VV+   + + +         T     D  
Sbjct: 904  GVYLVAALGYNMSVAVWVGFIALYGIAVETGVVMVIYLHEALDKRLAKGPVTEQDIYDAT 963

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T   A + ++P+      G  V+   A PM  G++ +A   + +   
Sbjct: 964  FEGAVLRLRPKLMTVAVALLGLVPIMWSSGTGADVMKPIAAPMIGGMISSAVHVLIMTPV 1023

Query: 819  ILLFIYDWRAKNARI 833
            I + +     K   +
Sbjct: 1024 IFVLMKKRELKKGAL 1038


>gi|187924175|ref|YP_001895817.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
 gi|187715369|gb|ACD16593.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
          Length = 1016

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 71/678 (10%), Positives = 182/678 (26%), Gaps = 44/678 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++   L+ + +++   G L A      +  +  FP+      +           L     
Sbjct: 9   KHRRSLLFVIALLAIAGALTAF-----RLPISLFPNVAFPRAV---------VSLDAGDR 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   + M  +E    +        +  +   +I+L+F           +    +  
Sbjct: 55  PAEQMATLVTMPVEEALRRVPNVRDVESTTSRGAAEISLNFDWGTDMAQATLQAQSAISE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L       +          +  S  +  Q +S   + +   +R     +   E   
Sbjct: 115 ILATLPQGTSMQVRRMDPTVFPVLAYSLTSQQQSLSALHDLAQFQMRPL---LSSVEGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     +     DP+RL     + A +S      N           +         
Sbjct: 172 RVDVTGGAQDEFEVAIDPARLAAYKLSLADVSKAIGASNVLMANGRIEDHYKLYLVIANT 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E+  + ++                      GA +        + + +       
Sbjct: 232 TITRLDELRNVVVS--------------------AGGATQIRLGDIATVREGVVPQRMRV 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +     +      A  +                   + S + 
Sbjct: 272 TADGQDAVLINVYQQPGANSVAIAKAIRAKLADFQHQMPAGVHLSNWYDQSELVIASATS 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   L  + LF  +   K   +A   + + +  T+ LL + G    + ++ G+ 
Sbjct: 332 VRDAIMIGVVLAALTLFAFLRNWKITAIAVALVPVVMAATILLLDVFGMGFNIMTLGGMA 391

Query: 422 LGIGLAVDSNILVNERIREENRKN-----QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
             +GL +D  I++ E I    R            +  + F+R  +    + +   +    
Sbjct: 392 AAVGLVIDDAIVMIEHIVRRMRDGGARAFHGRVMAAALEFTRPLAGSSAATLIIFVPLAF 451

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           L    G   +  ++TM  ++ IS       V  +    ++ K  +       + +     
Sbjct: 452 LSGVTGAFFKALSVTMASALFISFLVTWLAVPILCDRWLKPKDAEEHQETRFAAWMNRRY 511

Query: 537 CIAIQFMRARFWGVGISILFSICS--ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              ++ + AR   V + +L  I                   +GG  L         ++  
Sbjct: 512 AFLVERVTARPVLVLLGLLPLIVVAAFAFTRVGSGFMPSMDEGGFVLDYHTEPGTSVTET 571

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              ++ ++    +  N                +   +      +K    E +     +  
Sbjct: 572 DRLMKQIEGIVRANPNVATYSRRTGAGLGGDLNEPNKGDFFVRLKSGKREPIDAVMEEIR 631

Query: 655 EIVGPKISRELIRKGIVG 672
             V  ++    I    + 
Sbjct: 632 SKVETQVPGVSIELAQLM 649



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/256 (11%), Positives = 81/256 (31%), Gaps = 10/256 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V++        +       +           +    V +            + + ++ K
Sbjct: 242 VVVSAGGATQIRLGDIATVREGVVPQRMRVTADGQDAVLINVYQQPGANSVAIAKAIRAK 301

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWYFALGA 696
           + +                 S  +I         + + +   A+ ++      W     A
Sbjct: 302 LADFQHQMPAGVHLSNWYDQSELVIASATSVRDAIMIGVVLAALTLF-AFLRNWKITAIA 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           +  + + +  T+    +FG+ FN+  +  +   +G  ++D +V+ + + + M+       
Sbjct: 361 VALVPVVMAATILLLDVFGMGFNIMTLGGMAAAVGLVIDDAIVMIEHIVRRMRDGGARAF 420

Query: 757 FRDLIDKSINETLGRSVY-TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
              ++  ++     R +  +S A  I  +P+A   G     F   ++  +  A   S  +
Sbjct: 421 HGRVMAAALE--FTRPLAGSSAATLIIFVPLAFLSGVTGAFF-KALSVTMASALFISFLV 477

Query: 816 AAPILLFIYDWRAKNA 831
               +  + D   K  
Sbjct: 478 TWLAVPILCDRWLKPK 493



 Score = 45.8 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 32/201 (15%), Positives = 78/201 (38%), Gaps = 11/201 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +    +       D       +  V+K +++   L +    E+ G    +++  KG++ V
Sbjct: 798 DNLKRMVAVTARIDGRDLGSTIADVQKTLSDKTLLPSGVYYELGGLYQQQQIAFKGLLNV 857

Query: 674 -IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
              +   +   +   + ++  AL  +   +L          + GIE N++A+  +  +IG
Sbjct: 858 FGAAIALVFGLLLFLYERFRVALAVMAMPLLAAGAVFVGLWITGIELNISAMMGMTMIIG 917

Query: 732 YSVNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
                 +         ++       + F + +  +    L     T++AA +++LP+A  
Sbjct: 918 IVTEVAIFHVS----ELQGLVRDDEMPFEEALLSAGRNRLRPIAMTTIAAILALLPLAFA 973

Query: 790 ---GGSVIGSFAIPMAFGIVV 807
              G ++    AI +  G++V
Sbjct: 974 LGQGSAMQQPLAIAIISGLIV 994


>gi|84496346|ref|ZP_00995200.1| SecD [Janibacter sp. HTCC2649]
 gi|84383114|gb|EAP98995.1| SecD [Janibacter sp. HTCC2649]
          Length = 619

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 110/571 (19%), Positives = 199/571 (34%), Gaps = 63/571 (11%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD- 61
                 +    +  IGLL     F   S               LGLDL GG+ ++L+   
Sbjct: 11  RRALAGVGVLALALIGLLFGANQFSDGSYAP-----------KLGLDLEGGTQIILQPRL 59

Query: 62  --EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                     +    D +   +   G+    +     +  +        +   D +    
Sbjct: 60  TGGKTVSPEQITEARDIIVQRVDAGGVAGAEVTTQGGRNIVVSMPGTPSKRDEDAIKRSS 119

Query: 120 Q-GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           Q      L +       V +     S   +        +                     
Sbjct: 120 QLQFRPVLAIAAGSPQPVPSATPSGSASPTPTGSASPSASPTASPSPSASVPSANAASPS 179

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLG-----------------------TTAKMSFH 215
           ++        +   +      S                              + A+++  
Sbjct: 180 ASNNSAIPGALTTGVTPSPTASATASPKASATPSPSPSPSASGSAPAANDPFSLAQITPE 239

Query: 216 KVLPNNSKKGFMFGV-----------RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
                 +      G                D+DG    +   V +SG  ++ A+A +   
Sbjct: 240 LTEAFTALDCSKDGALESLVDDDTKPLVTCDADGAAKYILGPVVVSGDKISDASAGYTTN 299

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPL----------AVVLDGRVLTAPVINQAIPS 314
                      ++           ++ + +          A  LD RV+ AP  N+AIP+
Sbjct: 300 AQGQQTTTVEIQLSLNGEGAKQYADVSRKMVALEQPQNQLAATLDSRVIVAPSFNEAIPN 359

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           GKA I+GNFTI  A  LA  L+ G+LPI  ++     +   LG + +  G  A + GL+L
Sbjct: 360 GKASITGNFTITGARDLAQQLKFGALPISFDVQTNVKISPTLGGEQLRYGLYAGLIGLLL 419

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT----LPSIAGIVLGIGLAVDS 430
           +VL+ +  Y   G V   SI     LT   +++LG +      +  + G+++ IG   DS
Sbjct: 420 VVLYSLAQYRVLGFVTIASILAAGALTYLAITILGWSHNYRLDMAGVTGLIVAIGFTADS 479

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            I+  ERIR+E R+ +S+  ++  G++RA  TI  ++    +A +VL+     +VRGFA 
Sbjct: 480 FIVYFERIRDELREGRSLESAVATGWARAKRTILIADGVNFLAAIVLYLLASSSVRGFAF 539

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           T+GL+ L+ +         ++  + R K  +
Sbjct: 540 TLGLTTLLDILIVFFFTHPVVTLLARVKFFR 570



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 86/254 (33%), Gaps = 9/254 (3%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G  Q   ++ + V L   ++ L +     +       E           G+        
Sbjct: 317 EGAKQYADVSRKMVALEQPQNQLAATLDSRVIVAPSFNE-AIPNGKASITGNFTITGARD 375

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
              + K   +     +Q    + P +  E +R G+   +I  + +++Y   +++      
Sbjct: 376 LAQQLKFGALPISFDVQTNVKISPTLGGEQLRYGLYAGLIGLLLVVLYSLAQYRVL-GFV 434

Query: 696 AITTLILDITKTLGFFALFGIE----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            I +++     T     + G       ++  V  ++  IG++ +  +V ++R+R  ++  
Sbjct: 435 TIASILAAGALTYLAITILGWSHNYRLDMAGVTGLIVAIGFTADSFIVYFERIRDELRE- 493

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
               S    +           +      F++ + + +   S +  FA  +    ++    
Sbjct: 494 --GRSLESAVATGWARAKRTILIADGVNFLAAIVLYLLASSSVRGFAFTLGLTTLLDILI 551

Query: 812 SIFIAAPILLFIYD 825
             F   P++  +  
Sbjct: 552 VFFFTHPVVTLLAR 565


>gi|299133742|ref|ZP_07026936.1| acriflavin resistance protein [Afipia sp. 1NLS2]
 gi|298591578|gb|EFI51779.1| acriflavin resistance protein [Afipia sp. 1NLS2]
          Length = 1063

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 72/584 (12%), Positives = 165/584 (28%), Gaps = 37/584 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V+L  ++   G L AL     ++  D FP                G       
Sbjct: 9   LQRPYTFVVLALLLMIAGPLAAL-----RTPTDIFPDIGIPVI---------GVVWNYTG 54

Query: 61  DEDDFVNGF-LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              D + G  +  +   L + +        +       I + F  +        +VT   
Sbjct: 55  LPPDQMAGRIVTPFQRALTTTVNDIEHISANSYTGIGIIKIFFQPNVDIRTANAQVTAIA 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q +  +L       L++  +   + I+    + D +       +     Q    +     
Sbjct: 115 QTMLKQLPAGATPPLILNYSASTVPILQLALSGDGLTEQ--NLADFATNQLRTPLVTVPG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                     + Q+  + D + L+    +   ++      N         +     S   
Sbjct: 173 AAIPWPYGGKMRQIQIDLDATALQARGLSAQDVANALAAQNLITPVGTQKIGSFEYSIQL 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                   E+                     ++    +     +     ++        +
Sbjct: 233 NNSPLKINELG--------------------NLPIKAVNGAMVYIRDVAHVRDGNPPQTN 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +        +      IS    I+        ++          +         G+ 
Sbjct: 273 IVHVDGNRSVLMMVLKAGSISTLDIIDGIKKKIVEVKDTLPETLKIGLVGDQSIFVRGAI 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S       + A L  I++ + +   +  ++   SI L+V+  +  LSL+G TL + ++ G
Sbjct: 333 SGVAKEGILAAILTSIMILLFLGSWRSTVIIAISIPLSVMGAIICLSLIGETLNIMTLGG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   +  E I     + + V  S+  G ++  +  F S +   I  V +FF
Sbjct: 393 LALAVGILVDDATVTIENINYHLEQGKEVEASILDGAAQIVTPAFVSLLCICIVFVPMFF 452

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G +   F       +   +++ +     +             D N         +   
Sbjct: 453 LNGVSRFLFVPMAEAVMFAMIWSFLLSRTLVPTMAKYLLHPHPHDENGNPIPPAPSNNPL 512

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           ++F R                + +   H   +   F G + +  
Sbjct: 513 VRFQRGFERRFERFRASYRALLEMALHHRGVFVAGFFGFVAVSF 556



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 62/162 (38%), Gaps = 7/162 (4%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            + G+I + I + + I + F  W      +T L   +   +      G   ++ A+   + 
Sbjct: 891  LFGLIGAIILIYLLIVVNFQSWSDPFVIVTALPAALAGIVWILFATGTTLSVPALTGAIM 950

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G +  + V+V    R+ +          +   ++        + T++A  I + PMA+
Sbjct: 951  CMGVATANSVLVIAFAREEL---DRLGDPIEAALEAGFVRCRPVLMTALAMIIGMTPMAL 1007

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                GG         +  G++ A  +++ +   +   ++  R
Sbjct: 1008 SLGEGGEQNAPLGRAVIGGLIFATVATLMLVPVVFSMVHHKR 1049



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/198 (14%), Positives = 75/198 (37%), Gaps = 7/198 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + +  VK  + E + +  + +  I        + ++GI+  I+++I +L+++    
Sbjct: 299 DGIKKKIVEVKDTLPETLKIGLVGDQSIFVRGAISGVAKEGILAAILTSIMILLFLG--- 355

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +    ++ L +   +   +L G   N+  +  +   +G  V+D  V  + +    
Sbjct: 356 SWRSTVIIAISIPLSVMGAIICLSLIGETLNIMTLGGLALAVGILVDDATVTIENIN--- 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                       I     + +  +  + +   I  +PM    G     F +PMA  ++ A
Sbjct: 413 YHLEQGKEVEASILDGAAQIVTPAFVSLLCICIVFVPMFFLNGVSRFLF-VPMAEAVMFA 471

Query: 809 ASSSIFIAAPILLFIYDW 826
              S  ++  ++  +  +
Sbjct: 472 MIWSFLLSRTLVPTMAKY 489


>gi|52424510|ref|YP_087647.1| AcrB protein [Mannheimia succiniciproducens MBEL55E]
 gi|52306562|gb|AAU37062.1| AcrB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1027

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 78/669 (11%), Positives = 194/669 (28%), Gaps = 50/669 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +  +I  +GL       + +  +  +P                         
Sbjct: 9   KRPVMAIAISMLIVILGL-----QAISKLAVREYPKMTTTVIT---------VSTTYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +  F+    +E  +          +     + IT+    +    +    V   +Q 
Sbjct: 55  DAGLIQAFVTSKLEEAIAQADNIDYLSSTSAPSSSTITVKMKLNTDPASALADVLSKVQS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    +   L ++T     I+      D++    +  +  I R    Q+   E   
Sbjct: 115 VRSELPSGIEDPTLTSSTGGS-GIMYISFRSDKLHPSQV--TDYIERVVKPQLFTVEGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP +L     +  +++      N           F    +  + 
Sbjct: 172 KVQVYGAAEYAMRIWLDPQKLAGQNLSATQVTTALSNNNVQTAAGSDKGYFNIYRNKVET 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 ++                     ++     G +        ++           
Sbjct: 232 TTNTVEDLG--------------------NLIVYSDGDKLVRLRDVADVELNKESDDTRA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +     +    L   ++        + +      A   S + 
Sbjct: 272 AANGSDAVVLSIEPTSSANPLTVADNIKPLYETIKKNLPDSIESNILYDRTVAINSSIND 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL+V+ M +   +   +   +I +++I  + +L +   ++ L ++  ++
Sbjct: 332 VIHTIIEAVVIVLVVIMMFIGSLRAIFIPIVTIPISLIGVIFMLQMFDFSINLMTLLALI 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ ++ F +  +G       +    I  +     +   G
Sbjct: 392 LAIGLVVDDAIVVLENVDRHIKEGETPFRAAIIGTREIAVPVISMTIALVAVYSPMALMG 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDINPLSRFFLIP 535
              G   + FA+T+  ++ IS   A+++   M   I++++  K    ++           
Sbjct: 452 GITGTLFKEFALTLAGAVFISGIIALTLSPMMSAKILKHESSKFEEKVNRTLSKLTTGYT 511

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             + +     +   +   I+F+   I            + KGG    V A   V++  V+
Sbjct: 512 YILGLVMQARKAILLFAVIIFATLPILFSSLSSELTPAEDKGGFLGMVTAPSNVNVDYVQ 571

Query: 596 SN-------LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                    L +      S             +     D   ++R    V  ++T+    
Sbjct: 572 QATKPYEEILNNTPEKQYSQVIAGAPNTNQALVITTLKDWAERSRSQAEVMAELTKKAAA 631

Query: 649 STIQNTEIV 657
               +    
Sbjct: 632 IPEVSISAF 640



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 85/265 (32%), Gaps = 16/265 (6%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
             +      + A+    + +       L+    S   F    +  ++L   P  +      
Sbjct: 754  PESLKNYYISASNGQSVPLSSLLTVELEPQPYSLPRFSQLNSAEIQLVPSPTTTTGDAIA 813

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
                  +          +       +    L    I+ V+I    + + + I+F+     
Sbjct: 814  WLKDAAQDLPQGYSYDWKGEARQLVQEGNSLATTFILAVLI----IFLVLAIQFESIRDP 869

Query: 694  LGAITTLILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
               + ++ L I         L F  + G+  N+ +   ++TL+G      +++ +  ++ 
Sbjct: 870  FVILVSVPLAISGALLTLNLLSFLGVTGVTLNIYSEVGLITLVGLITKHGILMCEVAKEE 929

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSVIGSF--AIPMAFG 804
                    +  + I  +    L   + T+ A    ++P+    G   +  F   + +  G
Sbjct: 930  --QLNHGKTKMEAIMTAAQLRLRPILMTTAAMIAGLIPLLYASGAGAVMRFSMGVVVVAG 987

Query: 805  IVVAASSSIFIAAPILLFIYDWRAK 829
            + +    ++F+   I  +I      
Sbjct: 988  LAIGTLFTLFVLPVIYTYIGSNHKP 1012



 Score = 44.7 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 52/137 (37%), Gaps = 6/137 (4%)

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +            I T+ + +   +    +F    NL  + A++  IG  V+D +VV + 
Sbjct: 348 MMFIGSLRAIFIPIVTIPISLIGVIFMLQMFDFSINLMTLLALILAIGLVVDDAIVVLEN 407

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIP 800
           +    +      +          E     +  ++A      PMA+ G   G++   FA+ 
Sbjct: 408 V---DRHIKEGETPFRAAIIGTREIAVPVISMTIALVAVYSPMALMGGITGTLFKEFALT 464

Query: 801 MAFGIVVAASSSIFIAA 817
           +A  + ++   ++ ++ 
Sbjct: 465 LAGAVFISGIIALTLSP 481


>gi|305681261|ref|ZP_07404068.1| export membrane protein SecD [Corynebacterium matruchotii ATCC
           14266]
 gi|305659466|gb|EFM48966.1| export membrane protein SecD [Corynebacterium matruchotii ATCC
           14266]
          Length = 652

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 109/583 (18%), Positives = 204/583 (34%), Gaps = 79/583 (13%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
              +  + ++               P         LG+DLRGG+ + L           L
Sbjct: 19  AIAVFGLFIIAIYAVIFLTGDRSATP--------KLGIDLRGGTRITLVPQGATPTQDQL 70

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA------------------ 112
           Q   + L + +   G+   ++      + ++                             
Sbjct: 71  QQAKNILENRVNGMGVSGANVIVDGTSLVITVP-GEDTSQARAVGQTSQLLFRPVVQPDA 129

Query: 113 --------------------------DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                                     D+V      +   +             +   +  
Sbjct: 130 SVDNDSIIKAIEEMGNRWVTAGVMPADQVQKKFDELRKNVEKQKAAQEEQAKKQGNENQQ 189

Query: 147 LSQNNIDQVISHA-----IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
           L +  +  +   A        S+   +QR +Q+ + +   Q   + + L         S 
Sbjct: 190 LPEVKVPDLKVTAKAPAKAADSIAANKQRTEQLKVLKDDRQSKDAAKQLAASTLMVCSSA 249

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA-- 259
              L G+            ++ + ++ G   L     +    +    ++G  ++      
Sbjct: 250 PDPLQGSDDPALPLVACDASTNQPYILGEVPLLVGQTDPVHGK---RLTGNEIDSNRPIT 306

Query: 260 -----NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IP 313
                               +E G+  + ++T+  + + +A+ LD ++++AP I      
Sbjct: 307 GGLNSQTGQMEISFAFKAGDNEKGSETWADLTQKYLQQQVAITLDSKIISAPQIQSPTPV 366

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER------NVGADLGSDSIYKGTCA 367
                I+G FT + A  LA  LR G+LP+               V A LG  S+  G  A
Sbjct: 367 GSATAITGKFTQDEATELANNLRYGALPLSFAGENGESGGTAITVPASLGLASLKAGLFA 426

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLG 423
            + G  L+ LF +  Y  +GLV+  S+ L  +L    L LL    G +L L  IAG+++G
Sbjct: 427 GLVGFALVALFSLFFYRIFGLVSLVSLVLAEVLVYGALVLLGRLIGYSLDLAGIAGLIIG 486

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           IG   DS +++ ERI++E R  ++   ++   + RA  TI   N   LIA+VV++F   G
Sbjct: 487 IGATADSFVVLYERIKDEIRHGRTFRSAVPHAWDRAKQTIVTGNFVTLIASVVVYFLAVG 546

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            V+GFA T+GL+ +  +     +   ++I   R         N
Sbjct: 547 EVKGFAFTLGLTTVFDLVVTYLLTAPLVILASRKPWAAKPAFN 589



 Score = 92.8 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 71/230 (30%), Gaps = 32/230 (13%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +     Q   +     +               +      V   +    ++ G+  
Sbjct: 367 GSATAITGKFTQDEATELANNLRYGALPLSFAGENGESGGTAITVPASLGLASLKAGLFA 426

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++    + ++    ++  F L ++ +L+L      G   L G             LIGY
Sbjct: 427 GLVGFALVALFSLFFYRI-FGLVSLVSLVLAEVLVYGALVLLGR------------LIGY 473

Query: 733 SV----------------NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           S+                +  VV+Y+R++  ++      +FR  +  + +      V  +
Sbjct: 474 SLDLAGIAGLIIGIGATADSFVVLYERIKDEIR---HGRTFRSAVPHAWDRAKQTIVTGN 530

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               I+ + +       +  FA  +    V     +  + AP+++     
Sbjct: 531 FVTLIASVVVYFLAVGEVKGFAFTLGLTTVFDLVVTYLLTAPLVILASRK 580


>gi|225021305|ref|ZP_03710497.1| hypothetical protein CORMATOL_01324 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946038|gb|EEG27247.1| hypothetical protein CORMATOL_01324 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 652

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 109/583 (18%), Positives = 204/583 (34%), Gaps = 79/583 (13%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
              +  + ++               P         LG+DLRGG+ + L           L
Sbjct: 19  AIAVFGLFIIAIYAVIFLTGDRSATP--------KLGIDLRGGTRITLVPQGATPTQDQL 70

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIA------------------ 112
           Q   + L + +   G+   ++      + ++                             
Sbjct: 71  QQAKNILENRVNGMGVSGANVIVDGTSLVITVP-GEDTSQARAVGQTSQLLFRPVVQPDA 129

Query: 113 --------------------------DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                                     D+V      +   +             +   +  
Sbjct: 130 SVDNDSIIKAIEEMGNRWVTAGVMPADQVQKKFDELRKNVEKQKAAQEEQAKKQGNENQQ 189

Query: 147 LSQNNIDQVISHA-----IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
           L +  +  +   A        S+   +QR +Q+ + +   Q   + + L         S 
Sbjct: 190 LPEVKVPDLKVTAKAPAKAADSIAANKQRTEQLKVLKDDRQSKDAAKQLAASTLMVCSSA 249

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATA-- 259
              L G+            ++ + ++ G   L     +    +    ++G  ++      
Sbjct: 250 PDPLQGSDDPALPLVACDASTNQPYILGEVPLLVGQTDPVHGK---RLTGNEIDSNRPIT 306

Query: 260 -----NFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA-IP 313
                               +E G+  + ++T+  + + +A+ LD ++++AP I      
Sbjct: 307 GGLNSQTGQMEISFAFKAGDNEKGSETWADLTQKYLQQQVAITLDSKIISAPQIQSPTPV 366

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER------NVGADLGSDSIYKGTCA 367
                I+G FT + A  LA  LR G+LP+               V A LG  S+  G  A
Sbjct: 367 GSATSITGKFTQDEATELANNLRYGALPLSFAGENGESGGTAITVPASLGLASLKAGLFA 426

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLG 423
            + G  L+ LF +  Y  +GLV+  S+ L  +L    L LL    G +L L  IAG+++G
Sbjct: 427 GLVGFALVALFSLFFYRIFGLVSLVSLVLAEVLVYGALVLLGRLIGYSLDLAGIAGLIIG 486

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           IG   DS +++ ERI++E R  ++   ++   + RA  TI   N   LIA+VV++F   G
Sbjct: 487 IGATADSFVVLYERIKDEIRHGRTFRSAVPHAWDRAKQTIVTGNFVTLIASVVVYFLAVG 546

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            V+GFA T+GL+ +  +     +   ++I   R         N
Sbjct: 547 EVKGFAFTLGLTTVFDLVVTYLLTAPLVILASRKPWAAKPAFN 589



 Score = 92.8 bits (228), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 71/230 (30%), Gaps = 32/230 (13%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +     Q   +     +               +      V   +    ++ G+  
Sbjct: 367 GSATSITGKFTQDEATELANNLRYGALPLSFAGENGESGGTAITVPASLGLASLKAGLFA 426

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++    + ++    ++  F L ++ +L+L      G   L G             LIGY
Sbjct: 427 GLVGFALVALFSLFFYRI-FGLVSLVSLVLAEVLVYGALVLLGR------------LIGY 473

Query: 733 SV----------------NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
           S+                +  VV+Y+R++  ++      +FR  +  + +      V  +
Sbjct: 474 SLDLAGIAGLIIGIGATADSFVVLYERIKDEIR---HGRTFRSAVPHAWDRAKQTIVTGN 530

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               I+ + +       +  FA  +    V     +  + AP+++     
Sbjct: 531 FVTLIASVVVYFLAVGEVKGFAFTLGLTTVFDLVVTYLLTAPLVILASRK 580


>gi|303249233|ref|ZP_07335469.1| acriflavin resistance protein [Desulfovibrio fructosovorans JJ]
 gi|302489373|gb|EFL49325.1| acriflavin resistance protein [Desulfovibrio fructosovorans JJ]
          Length = 1024

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 54/636 (8%), Positives = 146/636 (22%), Gaps = 44/636 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++ + +   G++           +   PS                  + +   
Sbjct: 7   KRPVATTLVMAALIFFGVVS-----YFSLPISEMPSIDFPT-------------IQVTAS 48

Query: 62  EDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +        +   + +        S       ITL F  SR  +     V  
Sbjct: 49  LPGADPQTMASAVATPLERQFTSISGLQSMSSSNSLGTTTITLQFDLSRNIDGAGTDVLT 108

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
           ++      L  +                ++               +         +I + 
Sbjct: 109 YINAAQGSLPNNMPSPPTFQKVNPADMPIIYIRVSSD-TMPLYRVTNYAKVYIAQRISMI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q             + +P +L  L     +++         +            + 
Sbjct: 168 NGVAQVAVYGDQTYSPRVQVNPDKLAALGIGVDEVANAFNNETVLQPTGSLYGIDKLFTI 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +                                                      
Sbjct: 228 KAQGQLTSAT--------------------AYNRQIIAYRNGSPVRLQDVGRAINSTIND 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                              A  +    ++    +   + A   P            +   
Sbjct: 268 KMAAFFDQQQGIVIAVKRAAGTNTIQLVDAIRAMMPGIEATLPPSVKLEFLYDRSTSIKA 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +    + T  I   LV+IV+++ +      ++A  ++   +I TL+L+     ++   S 
Sbjct: 328 AIDDVEFTLLISIILVVIVVYLFLNNLPATIIAGLALPTALIGTLSLMVAFNFSIDNLSA 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L +G  VD  I++ E +       + +  +   G  +   TI    ++ +   + +
Sbjct: 388 MAIILAVGFVVDDAIVMIENVVRHTEMGKKIMQASLDGARQIGFTIVSMTLSLVAVFIPI 447

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            F  G   R          L  + +   +  ++   +        I  +     ++    
Sbjct: 448 MFMAGILGRVLNEMAVTITLCILVSG-FVTLSLTPMLCSRFLSGKISESGRLFKWVERGY 506

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                   R+    + +   +  + L     +  G        +          +   + 
Sbjct: 507 EKSLHFALRWRFFVMLLSMGLLVLTLWLFTVIPTGFIPATDSGIFYAFGMAEQSASFETM 566

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
            E +      F +      F+  +     ++     
Sbjct: 567 KERVLKVGRVFMSDPDVFKFIGVVGVGGPNTSMNNA 602



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/129 (13%), Positives = 47/129 (36%), Gaps = 6/129 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           + A   L   +  TL     F    +  +  A++  +G+ V+D +V+ + +   ++    
Sbjct: 358 IIAGLALPTALIGTLSLMVAFNFSIDNLSAMAIILAVGFVVDDAIVMIENV---VRHTEM 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
                        +     V  +++     +P+       G V+   A+ +   I+V+  
Sbjct: 415 GKKIMQASLDGARQIGFTIVSMTLSLVAVFIPIMFMAGILGRVLNEMAVTITLCILVSGF 474

Query: 811 SSIFIAAPI 819
            ++ +   +
Sbjct: 475 VTLSLTPML 483



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 81/244 (33%), Gaps = 9/244 (3%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            + + +   L  L                 +       ++  +  + E V           
Sbjct: 771  NGNPIMVPLNGLVKMHEGVGPLVVNHTGQLTSVTISFNTAGKYSLGEAVTAIQGLAKKEL 830

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                + I   + +        V  ++    ++IY+ +      +   +  ++ L      
Sbjct: 831  PSNISYIFEGQATAFNESLASVPFLLFLAIVVIYLILGILYESFIHPITILSGLPSAALG 890

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L    +FG + +L     ++ LIG    + ++V D   +         +  D + +   
Sbjct: 891  GLVTLMVFGRQLDLYGFIGIIMLIGIVKKNSIMVIDFAIE---AEREGKTPFDAVFEGCI 947

Query: 767  ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  + T++AA   ++P+A+    GG       + +A G++++   ++++      ++
Sbjct: 948  VRFRPIMMTTVAAIAGIMPIALGIGAGGDARQPLGLVVAGGLIISQVVTLYLTPVFYTYM 1007

Query: 824  YDWR 827
               +
Sbjct: 1008 DQLQ 1011


>gi|227820154|ref|YP_002824125.1| RND efflux transporter [Sinorhizobium fredii NGR234]
 gi|227339153|gb|ACP23372.1| probable RND efflux transporter [Sinorhizobium fredii NGR234]
          Length = 1043

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 71/585 (12%), Positives = 157/585 (26%), Gaps = 39/585 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++   +   GL       +       FP                     L   
Sbjct: 9   RRPVATLLMSLALVFAGLFAYAALPVAALPRTEFPVIN--------------VSAALPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +     +    +        +       I++ FA  R  +  A  V   +  
Sbjct: 55  SPETMATSVATPLIKQFDTIAGIDSISTNNSLGSTSISIQFALDRDIDAAAADVQAAITR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D              + VL    +        +      +     +   E   
Sbjct: 115 TLRTLPQDVPSPPSFRKVNPADAPVLL-LALKSDTVPLTKLDAFAQQVISPSLSTLEGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +  E DP  L     + A++       N++                   
Sbjct: 174 EVSIFGSQQFAVRIELDPDALAARGISLAELQSAIAAANDNSP----------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V+ +G  +                 I     G +         +   +A      
Sbjct: 217 --LGTVQSTGRQMTIIADTQLQNAAAFSKVIIKTADG-KAVRLGDVTKVIDSVANTQTAS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++    +    +                 +  G+   
Sbjct: 274 WHDGARAIILAIQRQPDANTVAVVDKVKSMLPTFQQSLPAGASLETLNDRSVSVRGAVDD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +  GLV++V+F+ V      L+   ++ +++I T A +  LG ++   S+  + 
Sbjct: 334 VEFTLGLTIGLVILVIFVFVRRLSATLIPALAVPISIIATFAAMYALGFSIDNISLMALT 393

Query: 422 LGIGLAVDSNILVNERI-REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L +GL VD  I++ E I R      Q+ F +          TI   +++ +   + +   
Sbjct: 394 LSVGLVVDDAIVMLENIVRHMEETGQNAFEAAIAASGEIGFTIIAISLSLVAVFIPVLLM 453

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG   +    FAI + +SIL S F ++++   +   +            P +      D 
Sbjct: 454 GGVIGKIFDEFAIVVTISILASAFVSLTLTPMLAARLPHKPAEPDDRHGPDALLERGFDV 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           +   + R     +   +   +  +  +           KG     
Sbjct: 514 LLRGYERLLTLCIRARLAVLVLFLASIGVTVYQVSATPKGFFPQE 558



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 65/156 (41%), Gaps = 6/156 (3%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           +G+ I  + ++I++++R +    L     + + I  T       G   +  ++ A+   +
Sbjct: 338 LGLTIGLVILVIFVFVR-RLSATLIPALAVPISIIATFAAMYALGFSIDNISLMALTLSV 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ + +     +  T  +  +    +  E     +  S++     +P+ + G
Sbjct: 397 GLVVDDAIVMLENI--VRHMEETGQNAFEAAIAASGEIGFTIIAISLSLVAVFIPVLLMG 454

Query: 791 GSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           G +      FAI +   I+ +A  S+ +   +   +
Sbjct: 455 GVIGKIFDEFAIVVTISILASAFVSLTLTPMLAARL 490



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 89/219 (40%), Gaps = 7/219 (3%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + Y     VA    +E + +   EI     +        ++ ++        ++ + +
Sbjct: 810  VTISYNLPTGVALGNSVEEIGRLKAEISMPQDVTTRFYGTAQLFQDAASNQAWLILGAIL 869

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + I + I ++ +   L  ++ L    +  L   +L G + ++ AV  +L LIG    + 
Sbjct: 870  TIYIVLGILYESFIHPLTILSGLPSAASGALVAISLGGFDLSIIAVIGLLMLIGIVKKNA 929

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVI 794
            +++ D     + L    +   + I ++        + TS+AA +  LP+A+  G    + 
Sbjct: 930  IMMIDVA---LSLQRNGMPAAEAIHRACLMRFRPILMTSLAALMGTLPIALGSGASAELR 986

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                + +  G++V+   ++F+   I L++        R+
Sbjct: 987  QPLGVAVVGGLLVSQPLTLFVTPVIYLYMESLADGIKRL 1025


>gi|319426675|gb|ADV54749.1| acriflavin resistance protein [Shewanella putrefaciens 200]
          Length = 1015

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 80/670 (11%), Positives = 202/670 (30%), Gaps = 47/670 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  I   GL+ +         L+ FP       +           +  +  
Sbjct: 9   KRPVTTSMFFFAILLFGLVSS-----RLLPLEMFPGIDIPQIV---------VEVPYKGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + +           Q   +I ++          + +    +  
Sbjct: 55  TPAEVERDITKVLEESLATMGGIDELESESSQEGAEIEINMKWGENVATKSLEAREKIDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++  +   +  ++ ++  + + ++ +S A +      +Q    +   E   
Sbjct: 115 VRHLLPKDVERVFIRQFSTADMPVLTIRISSERELSGAFDLLD---KQLKRPLERVEGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         Q+    +  RL     +   +       N            +      + 
Sbjct: 172 KVNLYGVEQKQIEVRINADRLAASGISATDLQERLNRENFVISAGTLRASNIVYQVSPKG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  +I+ + L       D    +  +          + + V  D   +  A ++D  
Sbjct: 232 EFRNLEDINALVLIPGLTLGDIADVQFALPERVQGRHLDKHYAVGLDVFKESGANLVDVS 291

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                VI+QA    + Q    F +E                               S   
Sbjct: 292 ERVLKVIDQAKQDQQFQGIRLFIME-----------------------DQASGVKSSLMD 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  I A L  IVL++ +   K  LV   S+ +++ +TLA + LLG +L + S+ G++
Sbjct: 329 LLLSGLIGALLSFIVLYLFLRNLKMTLVVVSSVPISIGMTLAAMYLLGYSLNILSMMGLL 388

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ +D+ ++V E + +E +         S+  G  +    +    +T  I  +   F
Sbjct: 389 LAIGMLIDNAVVVTESVLQEKQGKHPKDNEESVMTGVDKVSLAVLAGTMTTAIVFLPNIF 448

Query: 480 ----FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                    +   AI + +S+  S+  A +++  ++  +      K    N    +    
Sbjct: 449 GVKVEITIFLEHVAIAICISLAASLLVAKTLIPLLLTKLHFDIPTKKETGNLQRFYNKSL 508

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           + + ++  R+    V   +  +   + ++     +     +  I   V     ++++   
Sbjct: 509 NWVLLRPWRSGMIAVA-ILTSTALPLSMVKQDQEDSQSKERIYINYQVEGRHNLNVTEAM 567

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            N     +     +                   + +  +   + +   +I       +  
Sbjct: 568 VNQMEEYLYKNKEEFHIDSVYSYYASDDGSSVILLKKDLPIPLDELKKKIRSGFPKYSIA 627

Query: 656 IVGPKISREL 665
                   + 
Sbjct: 628 KPQFGWGNDN 637



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 88/252 (34%), Gaps = 14/252 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  ++ V      + +E     D            +     +     AQT++ ++++   
Sbjct: 749 VRIDQRVYTLDNLAKIEIQPRFDTIRHYNRQTSLSIGANLEEMTTEEAQTKIKQVMENIH 808

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT-LI 701
                  +++       +    +    ++ V      + I +   F+      AI T ++
Sbjct: 809 FPDGYNYSLRGGFERQDEDQSVMAINMLLAV----AMIYIVMAALFESLLLPAAIITSIL 864

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
             IT       L G   ++ A+  +L L+G  VN+ +V+ D++ +            D I
Sbjct: 865 FSITGVFWALFLTGTPNSVMAMIGILILMGIVVNNGIVLVDQINQMTPDLDK---LSDTI 921

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIGSFAIPMAFGIVVAASSSIFI 815
            +     L   + T     + +LP+A+       GG      AI +  G+  +  +S+++
Sbjct: 922 REVCITRLRPVLMTVGTTVLGLLPLALGETQIGGGGPPYYPMAIAIIGGLSFSTVTSLYL 981

Query: 816 AAPILLFIYDWR 827
                   Y  R
Sbjct: 982 VPLCYQAFYRMR 993



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 77/189 (40%), Gaps = 3/189 (1%)

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           + K  +      +   E     +   L+   + G+I + ++ ++           L  ++
Sbjct: 300 QAKQDQQFQGIRLFIMEDQASGVKSSLMDLLLSGLIGALLSFIVLYLFLRNLKMTLVVVS 359

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + I  TL    L G   N+ ++  +L  IG  +++ VVV + + +  K         
Sbjct: 360 SVPISIGMTLAAMYLLGYSLNILSMMGLLLAIGMLIDNAVVVTESVLQE-KQGKHPKDNE 418

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-IGSFAIPMAFGIVVAASSSIFIAA 817
           + +   +++     +  +M   I  LP  ++G  V I  F   +A  I ++ ++S+ +A 
Sbjct: 419 ESVMTGVDKVSLAVLAGTMTTAIVFLP-NIFGVKVEITIFLEHVAIAICISLAASLLVAK 477

Query: 818 PILLFIYDW 826
            ++  +   
Sbjct: 478 TLIPLLLTK 486


>gi|258514410|ref|YP_003190632.1| preprotein translocase subunit SecD [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778115|gb|ACV62009.1| protein-export membrane protein SecD [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 416

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 125/384 (32%), Positives = 219/384 (57%), Gaps = 26/384 (6%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +   +     +    I+++M +I  R++Q G++E  IQ+ G  R++++L G +DP   
Sbjct: 57  VVLQAEETPGVSLTDDEIKKAMAVISNRVNQYGVAEPIIQQQGKDRVIVELAGIKDPDEA 116

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
              +  TA + F                               +  ++G  L  A  +  
Sbjct: 117 VNNMVKTAYLEF--------------------------KAENGQTVLTGRDLKDAEESKA 150

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
           P +    V+++F   GA+ F + T  N+G+ L + LDG+++  P I   I +G+A+I+G 
Sbjct: 151 PDSSAAQVNLTFTPAGAKTFGDFTARNVGRNLGIYLDGKLIQNPSIETPIQNGQARITGY 210

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T++ A  +A +LR+G+LP+K++++E+R VG  LG+DS+ K   A + G   I++FMI  
Sbjct: 211 ATLQDAHNIAILLRSGALPVKMDVIEKRAVGPMLGADSLAKSKMAGIVGFAAILIFMIGY 270

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   GL+AD ++ +  ++ LA+ + L  T+TLP IAG +L +G+AVD+N+++ ERI+EE 
Sbjct: 271 YRLPGLIADIALVIYSLIVLAVFAGLHVTMTLPGIAGFLLSLGIAVDANVIIFERIKEEL 330

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R  +++  ++D GF RA  T+ D+N+T LIA  VL++FG G ++GFA+T+ + IL SMFT
Sbjct: 331 RNGKTLRTAIDAGFKRAVVTVVDANVTTLIAAAVLYYFGTGPIKGFAVTLSVGILASMFT 390

Query: 503 AISIVRAMMIFIIRYKKMKSIDIN 526
           AIS+ R M+        +K+  + 
Sbjct: 391 AISLTRYMLQLTASSNLVKNTKMY 414



 Score =  132 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 34/175 (19%), Positives = 77/175 (44%), Gaps = 4/175 (2%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +     VGP +  + + K  +  I+   A+LI++   ++    L A   L++     
Sbjct: 231 KMDVIEKRAVGPMLGADSLAKSKMAGIVGFAAILIFMIGYYRLP-GLIADIALVIYSLIV 289

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L  FA   +   L  +A  L  +G +V+  V++++R+++ ++      + R  ID     
Sbjct: 290 LAVFAGLHVTMTLPGIAGFLLSLGIAVDANVIIFERIKEELR---NGKTLRTAIDAGFKR 346

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +   V  ++   I+   +  +G   I  FA+ ++ GI+ +  ++I +   +L  
Sbjct: 347 AVVTVVDANVTTLIAAAVLYYFGTGPIKGFAVTLSVGILASMFTAISLTRYMLQL 401



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/425 (10%), Positives = 120/425 (28%), Gaps = 35/425 (8%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRF---PSAMP-KNRISLGLDLRGGSHLVLEV- 60
           W  I    +  + +      F   ++   +    S MP    I+LGLDLRGG H+VL+  
Sbjct: 3   WKSISKLAVIVLLVAAVSVVFFKPNLKPVYNKEISWMPLVKIINLGLDLRGGVHVVLQAE 62

Query: 61  DEDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTL 117
           +       +  ++     + + + + G+    ++Q   +++ +  A  +  +     V  
Sbjct: 63  ETPGVSLTDDEIKKAMAVISNRVNQYGVAEPIIQQQGKDRVIVELAGIKDPDEA---VNN 119

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++             L       +  +        +        + ++          +
Sbjct: 120 MVKTAY----------LEFKAENGQTVLTGRDLKDAEESKAPDSSAAQVNLTFTPAGAKT 169

Query: 178 ESTIQRLGSHR---ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                     R   I +     Q+PS    +    A+++ +  L +      +     L 
Sbjct: 170 FGDFTARNVGRNLGIYLDGKLIQNPSIETPIQNGQARITGYATLQDAHNIAILLRSGALP 229

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                         +    L  +           ++ +                +I   +
Sbjct: 230 VKMDVIEKRAVGPMLGADSLAKSKMAGIVGFAAILIFMI-----GYYRLPGLIADIALVI 284

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
             ++   V     +   +P     +        A ++        L     +    + G 
Sbjct: 285 YSLIVLAVFAGLHVTMTLPGIAGFLLSLGIAVDANVIIFERIKEELRNGKTLRTAIDAGF 344

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
                ++       +    +      + Y   G +  F++ L+V +  ++ + +  T  +
Sbjct: 345 KRAVVTVVDANVTTLIAAAV------LYYFGTGPIKGFAVTLSVGILASMFTAISLTRYM 398

Query: 415 PSIAG 419
             +  
Sbjct: 399 LQLTA 403


>gi|15602997|ref|NP_246069.1| hypothetical protein PM1132 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|12721478|gb|AAK03216.1| AcrB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1032

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 66/555 (11%), Positives = 164/555 (29%), Gaps = 31/555 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              V    +   +  F+    +E  +                + IT+    +        
Sbjct: 47  VSTVYPGADASLIQAFITSKLEEAVAQADNIDYLSSKSSPNNSLITIKMKLNTEPNGALA 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  V S+L       ++ ++T     ++  Q +  ++   A + +  I R    Q
Sbjct: 107 DVLAKVNSVRSQLPRGIDDPVITSSTGGT-GMMYIQFSSTKL--DASQVTDYIERVIKPQ 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
               E   +          L    DP+++     +   +       N           ++
Sbjct: 164 FFTVEGVAEVQIFGASDYALRIWLDPAKMAAQNLSAMAVRNALSSNNVQTAAGNDNGFYV 223

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
              +  +   +   E+                     ++     G +        ++   
Sbjct: 224 TYKNKVETTTKSVEELG--------------------NLIISSQGDKLVRLRDIADVELN 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            +      V           +  +  +     E    L   ++          +      
Sbjct: 264 KSSDSSRAVANGFESVVLAINPTSSANPLVVAENVRPLYEQIKQNLPDSMQAEILYDTTI 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A   S      T      +VL+V+ + +   +  L+   +I +++I  + LL     ++ 
Sbjct: 324 AINSSIDEVIKTILEATIIVLVVITLFIGSLRAILIPVITIPISLIGVIMLLQAFDFSIN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  ++L IGL VD  I+V E +    +  ++ F +  +G       +    I  +  
Sbjct: 384 LMTLLALILAIGLVVDDAIVVLENVDRHIKLGETPFRAAIIGTREIAVPVISMTIALMAV 443

Query: 474 TVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-----IDI 525
              +       G   + FA+T+  ++ IS   A+++   M   +++     S     I+ 
Sbjct: 444 YSPMALMDGITGSLFKEFALTLAGAVFISGIVALTLSPMMSSKLLKPHTDPSKLEQCIEK 503

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
              +        + +     R      +++F+                + KG   +   A
Sbjct: 504 MLTTINHGYNYALNLVMASRRCMLAFAAVIFATLPFLFNGLASELTPAEDKGAFMVIGRA 563

Query: 586 NRPVDLSVVRSNLES 600
              V++  V+  +  
Sbjct: 564 PSNVNVDYVQEAMHE 578



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 96/281 (34%), Gaps = 15/281 (5%)

Query: 553  SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
            S             + +   +     +    L N  V  S  +S   S  +         
Sbjct: 728  SAATIERVDIDGRAYRIIMQVKRGERLSPESLNNYYVTASNGKSVPLSSFLTMTLESQPT 787

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-IV 671
                F              T+        +         Q         +R+L+++G  +
Sbjct: 788  SLPRFSQLNSAVISAVPLPTKSTGEAIAWLKMAAKEYLPQGYNYDFTGEARQLVQEGNAL 847

Query: 672  GV--IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL------GFFALFGIEFNLTA 722
             V  +++ + + + + I+F+     L  + ++ L ++  L      GFF + G   N+ +
Sbjct: 848  AVTFVLAVVIIFLVLAIQFESIRDPLVIMISVPLAVSGALLMLNFLGFFRIPGTSLNIYS 907

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++TL+G      +++ +  ++    +  +    + I ++    L   + T+ A    
Sbjct: 908  QVGLITLVGLITKHGILMCEVAKEEQLQHGKNR--IEAITEAAKVRLRPILMTTAAMIAG 965

Query: 783  VLP-MAVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPIL 820
            ++P +   G   +  F+I +    G+ +    ++F+   I 
Sbjct: 966  LIPLLYASGAGAVSRFSIGIVIVSGLAIGTLFTLFVLPVIY 1006



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 88/261 (33%), Gaps = 7/261 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + +    ++ V L  +     +             E   L        + +     + 
Sbjct: 240 GNLIISSQGDKLVRLRDIADVELNKSSDSSRAVANGFESVVLAINPTSSANPLVVAENVR 299

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
            + ++I + +P S                I + I  ++ + I +L+ I          L 
Sbjct: 300 PLYEQIKQNLPDSMQAEILYDTTIAINSSIDEVIKTILEATIIVLVVITLFIGSLRAILI 359

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            + T+ + +   +     F    NL  + A++  IG  V+D +VV + +    +      
Sbjct: 360 PVITIPISLIGVIMLLQAFDFSINLMTLLALILAIGLVVDDAIVVLENV---DRHIKLGE 416

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSS 812
           +          E     +  ++A      PMA+  G   S+   FA+ +A  + ++   +
Sbjct: 417 TPFRAAIIGTREIAVPVISMTIALMAVYSPMALMDGITGSLFKEFALTLAGAVFISGIVA 476

Query: 813 IFIAAPILLFIYDWRAKNARI 833
           + ++  +   +       +++
Sbjct: 477 LTLSPMMSSKLLKPHTDPSKL 497


>gi|121595028|ref|YP_986924.1| CzcA family heavy metal efflux protein [Acidovorax sp. JS42]
 gi|120607108|gb|ABM42848.1| heavy metal efflux pump, CzcA family [Acidovorax sp. JS42]
          Length = 1059

 Score =  134 bits (336), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 88/677 (12%), Positives = 197/677 (29%), Gaps = 46/677 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV+L ++   +G + A+     ++ LD  P       I          +       
Sbjct: 11  RNRFLVLLATLFVIVGGVYAVF----KTPLDALPDLSDVQVI---------VYTEYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          + K  +         + + + F D         +V  +L   
Sbjct: 58  PQVVEDQVTYPLTTSMLSVPKSKVVRGFSFFGASFVYIIFEDGTDIYWARSRVLEYLNFA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S++       +    T        +    D+ ++         +R    Q+  +    +
Sbjct: 118 SSRMPKGVTPQIGPDATGVGWVYQYALLAKDKTLAELRTLQDWYLRY---QLTKAHGVAE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  +       DP +LR      AK+S      N    G +  +         +  
Sbjct: 175 VASIGGFVQTYQVTVDPVKLRAYGIPLAKVSQVIRDSNRDVGGRVVEMAETEYMVRGKGY 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I  + +               V+++ DE           +              
Sbjct: 235 LRGVADIENLVVKAEKGTPVLIRDIARVELAPDERRGLTELNGEGE-------------- 280

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    I         + AG                   +    
Sbjct: 281 -----VVSGIAMARYGQNALEVIHNLKEKITEVSAGLPQGVSIQAVYDRSDLIHRAIDTL 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T    + +V +V  + +++ +  LVA   + + V+++   + LLG    L S+ GI +
Sbjct: 336 KRTLLEESLIVALVCMVFLMHIRSALVAILMLPVGVLISFIAMRLLGMNSNLMSLGGIAI 395

Query: 423 GIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IG  VD+ I++ E   +           +    ++          +F S +   ++ + 
Sbjct: 396 AIGAMVDAAIVMIENAHKHLERLPPEHDGKQRAQAMITACKEVGPALFFSLLIITVSFLP 455

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   S+  +   ++++V  +M+  IR + M           FL
Sbjct: 456 VFTLESQEGRMFSPLAFTKTFSMAGAALLSVTLVPVLMMIFIRGRIMPE--SRNPVNRFL 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           I     I     R+  V I+I   +  +       L             +     +    
Sbjct: 514 IWAYRPIIAGVMRWKKVTIAIALIVLGVSFYPASKLGSEFMPTLNEGTLLYMPASLPGMS 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +    E LQ  +   ++F   ++   +       +      +      +       +   
Sbjct: 574 ITKAAELLQTQNKIIKSFPEVESVYGKAGRANTATDPAPTEMFETVINLKPESAWRSGMT 633

Query: 654 TEIVGPKISRELIRKGI 670
           T+ +  ++ + L   GI
Sbjct: 634 TDKLIAEMDKALQFPGI 650



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 60/162 (37%), Gaps = 10/162 (6%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + M+  + IR     AL AI  L + +  +     L G+  NL ++  +   IG
Sbjct: 343 SLIVALVCMVFLMHIR----SALVAILMLPVGVLISFIAMRLLGMNSNLMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMR---KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             V+  +V+ +      + +            +  +  E      ++ +   +S LP+  
Sbjct: 399 AMVDAAIVMIENAHKHLERLPPEHDGKQRAQAMITACKEVGPALFFSLLIITVSFLPVFT 458

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                   F   A    F +  AA  S+ +   +++     R
Sbjct: 459 LESQEGRMFSPLAFTKTFSMAGAALLSVTLVPVLMMIFIRGR 500



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 52/159 (32%), Gaps = 13/159 (8%)

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----- 741
              +    L  + ++   +   +      G   ++      + L G +    VV+      
Sbjct: 884  FRRLTETLIVMLSVPFALVGGVWLMWWLGYNLSVAVAVGFIALAGVAAETGVVMLIYLDH 943

Query: 742  --DRMRKNMKLYTTS---ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
              + +++  +            + +     E +   + T +A    +LP+      G  V
Sbjct: 944  AWEEIKEKRRSEGKEPGVGDLYEAVMDGAVERVRPKMMTVVAIMAGLLPIMWGTGTGSEV 1003

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +   A PM  G++ +   ++ +   +   +  +  +  R
Sbjct: 1004 MSRIAAPMVGGMISSTVLTLAVIPALYALVKQFELRRQR 1042


>gi|224477635|ref|YP_002635241.1| putative antibiotic transport-associated protein [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222422242|emb|CAL29056.1| putative antibiotic transport-associated protein [Staphylococcus
           carnosus subsp. carnosus TM300]
          Length = 876

 Score =  134 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 67/591 (11%), Positives = 190/591 (32%), Gaps = 53/591 (8%)

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
              ++ K      + ++        A      Q +         +   +           
Sbjct: 103 DDKHVDKITDPYKNRQISKDKTTAFADIQYDVQATSLSDKSKDKVKDNLDDLKDKHNLQT 162

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            +    +   + +    +     VA +VL++ F   +     +++     +  +  + L+
Sbjct: 163 ELTGNGMSGSVETGGASEIIGIAVAFIVLLITFGSFVAAGLPIISAVIGLVTSVSIIGLM 222

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
           + +     +     +++G+ + +D  + +  R R+  ++ + V  ++ +    A   +  
Sbjct: 223 TKIVDVPNVTLTLAVMIGLAVGIDYALFILFRYRQIIKEERDVPKAVGLAVGTAGGAVIF 282

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK--SI 523
           + IT +IA   L   G   +        +S+L ++ +A+++V A++    +  + K    
Sbjct: 283 AGITVIIAVCGLGLIGIKFLGVMGYMSAISVLFAVISALTLVPALISIFHKAIRPKVERK 342

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                   +      +          +       I  + L                   +
Sbjct: 343 SRKTADTRWSRFVVGSPLAAVLIGVIILGLAAMPISQMRLGIPDDGVKPDHTTQKKAYDI 402

Query: 584 LANRPV----------------------------DLSVVRSNLESLQIGDISFQNFDGEK 615
           ++++                              DLS    +++++ +      + D + 
Sbjct: 403 MSDKFGEGFNGKIPMLVNVKDKKDNPQEMQKDLKDLSKDIQDMDNVDMVSPPQMSKDNDY 462

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----I 670
             +  +  +   + +   +++ ++    +     +          I+ ++ +K      +
Sbjct: 463 ALITVIPDKGPQAKSTDDLVKDLRDYHDDAKDKYSFLTEISGQSVINLDMSKKLNDAIPV 522

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE------------- 717
              II  +A L+ + +       L A+   +L +T TLGF  L   E             
Sbjct: 523 FAGIIVTLAFLLLMLVFRSIIIPLKAVGGFLLSLTATLGFTTLVMQEGFMKRLFGVHETA 582

Query: 718 --FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
                  V  +  L G +++ +V +  R+ +    Y+ +   +  I   I E+    +  
Sbjct: 583 PVLAFLPVIVIGILFGLAMDYEVFLMSRIHEE---YSRTHDNKHSIKVGIRESGPVIIAA 639

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++      +  A+    +I +  I +AFG+   A     +  P L  ++  
Sbjct: 640 ALIMISVFMAFAIQDDIMIKTMGIALAFGVFFDAFIVRLLMIPALTALFGK 690


>gi|38505868|ref|NP_942486.1| hypothetical protein slr6043 [Synechocystis sp. PCC 6803]
 gi|38423892|dbj|BAD02100.1| slr6043 [Synechocystis sp. PCC 6803]
          Length = 1046

 Score =  134 bits (335), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 78/596 (13%), Positives = 188/596 (31%), Gaps = 52/596 (8%)

Query: 5   PWLVILYSMICCIGLLIALPNFL--PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            W +    ++    +L+A+       +  LD FP   P               + ++ + 
Sbjct: 7   KWSIAQRWLVVIGAVLVAILGSYNLTRMPLDVFPPFAPP-------------QVEIQTEA 53

Query: 63  DDFVNGFLQMYSD-ELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  ++      + S +       +   S     + +   FAD+         VT  
Sbjct: 54  PGLAPEEVETLITLPIESAVNGTPGVEMVRSSSAVGISVVKAIFADNTDIYRARQLVTER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN----NIDQVISHAIEQSMEIIRQRIDQI 174
           LQ   SKL    ++  +   +    +I++       +     S+ +E    + R+  +QI
Sbjct: 114 LQSARSKLPSGAEEPQISPVSSPISTILMYALTVEESPTNPQSNLMEVRRRVDREITNQI 173

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  Q +     + Q     DP+RL+    +  +++                     
Sbjct: 174 LAVPGVSQVVAYGGDVKQYQVLVDPARLKGFNISLQQVTKAV------------------ 215

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             +           ++    +        +    + D                  +    
Sbjct: 216 --EEANVNAAGGFLLTADQEDVIRGLGRIENLSQLADSVVTARDGTPILLRDVAEVTIGP 273

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A++     +        +   + Q       +      A ++A         V  R    
Sbjct: 274 ALMRGDGSVDGQRAVVLVIDKQPQADTPTVTKAVERTMAEVKAALPAGVNLQVTFRQESF 333

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  + +      +V +V+ + ++  +  ++   +I L++++ + +L   G  +  
Sbjct: 334 IDAAIANVRDSLRDGIIIVAVVMVVFLMNWRTAIITLSAIPLSILIGMMILGWFGQGINA 393

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNI 468
            ++ G+ + IG  VD +I+  E      RKNQ        F  +        +++  S +
Sbjct: 394 MTLGGLAVAIGSVVDDSIVDMENCYRGLRKNQALGNPKHPFQVVYDTSVEVRTSVIFSTV 453

Query: 469 TALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             ++    +F      G       +   LSIL S   A+++  A+   ++   ++ S + 
Sbjct: 454 IIVVVFAPIFSLTGVEGRIFAPMGVAYLLSILASTLVAMTLSPALCALLLAPCRLPSDET 513

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                   I   +         W +G +I F I S+ L+ + G  +  +F+    +
Sbjct: 514 WLARISQKIYQPLLKFSTHHPRWIIGAAIAFFIFSLSLVPSMGRVFLPEFQEQSLV 569



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 101/262 (38%), Gaps = 13/262 (4%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G + +   +   + L+ V           I+ +N          ++ +   SV      +
Sbjct: 779  GNLLVDTPSGTKIPLAQVAQISYGTGPNTINRENVSRLIVASANVKGRDLRSVVNDIQAQ 838

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            + +K                   + S+ L+  G++ +++  I +L+Y  ++     A   
Sbjct: 839  VKEKISLPTGYFIQYGGQFESEERASQNLLLFGLLSIVV--ITILMYFAVK---SLAATL 893

Query: 697  ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  + L +    G  A+   G   ++ ++   +TL G +V + +++ D   +   L    
Sbjct: 894  MIMVNLPLALAGGILAIAVTGGVISVASLVGFITLFGVAVRNGLLLVDNYNQKFALA--- 950

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASS 811
            +    ++ +   E L   + T++ + + +LP+A+    G  ++   AI +  G+  + + 
Sbjct: 951  LPLAQVVQEGSQERLVAILMTALTSALGMLPLAIGTGAGKEILQPLAIVILGGLFTSTAL 1010

Query: 812  SIFIAAPILLFIYDWRAKNARI 833
            ++ +   +      +   +A +
Sbjct: 1011 TLLVLPALYAQFGRFLRPSASV 1032



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 55/145 (37%), Gaps = 8/145 (5%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-- 743
               W  A+  ++ + L I   +     FG   N   +  +   IG  V+D +V  +   
Sbjct: 359 FLMNWRTAIITLSAIPLSILIGMMILGWFGQGINAMTLGGLAVAIGSVVDDSIVDMENCY 418

Query: 744 --MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA--- 798
             +RKN  L      F+ + D S+ E     +++++   +   P+    G     FA   
Sbjct: 419 RGLRKNQALGNPKHPFQVVYDTSV-EVRTSVIFSTVIIVVVFAPIFSLTGVEGRIFAPMG 477

Query: 799 IPMAFGIVVAASSSIFIAAPILLFI 823
           +     I+ +   ++ ++  +   +
Sbjct: 478 VAYLLSILASTLVAMTLSPALCALL 502


>gi|206900776|ref|YP_002251311.1| protein-export membrane protein SecD [Dictyoglomus thermophilum
           H-6-12]
 gi|206739879|gb|ACI18937.1| protein-export membrane protein SecD [Dictyoglomus thermophilum
           H-6-12]
          Length = 399

 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 141/369 (38%), Positives = 222/369 (60%), Gaps = 27/369 (7%)

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
           ++   A+ +++E+IR RIDQ+G++E +I + GS +I+++LPG +DP R  +++G TA + 
Sbjct: 51  EITDDAVRRTIEVIRNRIDQLGVTEPSIYKEGSDKIVVELPGIKDPERALEIIGQTALLE 110

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           F                               K  ++G  L  A   FD    +P+V + 
Sbjct: 111 F--------------------------KDETGKTILTGSALKSAKVEFDQVG-QPMVRVE 143

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
            +  GA+ F + T  N+GK + +VLDG+V++ PVI + I  G   I+G FTI+ A  LA 
Sbjct: 144 MNPEGAKIFADFTSKNVGKQVFIVLDGKVISNPVIKEPITEGTGVITGRFTIDEAQKLAI 203

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
           +LRAG+LP+ + ++E R +   LG D++     A V G +L+V+FMI+++   GLVAD +
Sbjct: 204 LLRAGALPVPVKVIENRTIDPTLGKDTMEAAYKAGVIGAILVVIFMILVFRFLGLVADIA 263

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           + + VIL LA+L LL ATLTLP IAGI+L IG+AVD+N L+  R+REE  + ++   SLD
Sbjct: 264 LLIYVILDLAVLKLLNATLTLPGIAGIILSIGMAVDANCLIFTRMREEYAQKKTPMASLD 323

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            GF  A   I DSN+T ++A ++LF+FG G +RGFA+T+ L + +SMFT I + R ++  
Sbjct: 324 AGFRNALRAIIDSNVTTILAALILFYFGTGPIRGFAVTLSLGVALSMFTQIVVTRTLLEN 383

Query: 514 IIRYKKMKS 522
           ++     K 
Sbjct: 384 LLSLPVFKK 392



 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 74/165 (44%), Gaps = 4/165 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            + P + ++ +       +I AI ++I++ + F++   L A   L++ +   L    L  
Sbjct: 221 TIDPTLGKDTMEAAYKAGVIGAILVVIFMILVFRFL-GLVADIALLIYVILDLAVLKLLN 279

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  IG +V+   +++ RMR+    Y    +    +D      L   + +
Sbjct: 280 ATLTLPGIAGIILSIGMAVDANCLIFTRMREE---YAQKKTPMASLDAGFRNALRAIIDS 336

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++   ++ L +  +G   I  FA+ ++ G+ ++  + I +   +L
Sbjct: 337 NVTTILAALILFYFGTGPIRGFAVTLSLGVALSMFTQIVVTRTLL 381



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 15/127 (11%), Positives = 41/127 (32%), Gaps = 21/127 (16%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE--- 59
                     ++  I + + L                       GLD+RGG  + L+   
Sbjct: 4   RPEIKTAFIVVLLGIAIWVLL-----------------TVPFRYGLDIRGGIRVTLQCQK 46

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLF 118
            +  +  +  ++   + +R+ + + G+   S+ ++  +KI +     +  E   + +   
Sbjct: 47  AEGVEITDDAVRRTIEVIRNRIDQLGVTEPSIYKEGSDKIVVELPGIKDPERALEIIGQT 106

Query: 119 LQGVNSK 125
                  
Sbjct: 107 ALLEFKD 113


>gi|183220959|ref|YP_001838955.1| putative cation efflux system protein [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911054|ref|YP_001962609.1| AcrB family efflux pump [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167775730|gb|ABZ94031.1| Efflux pump, AcrB family [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Ames)']
 gi|167779381|gb|ABZ97679.1| Putative cation efflux system protein; putative membrane protein;
           putative signal peptide [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 1084

 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 70/679 (10%), Positives = 196/679 (28%), Gaps = 47/679 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + ++ +L  +I  +G   A          + FP+                   +   
Sbjct: 10  LSKSLFVNLLTFLILLVGGFTAA-----TMNREAFPNINFDIV---------SVTTIYAG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR-FKENIADKVTLFL 119
                V   +    ++    +        +  + ++ I ++   +    + + D +   +
Sbjct: 56  AAPADVEKLVTKPLEDAIKEVDGIKEFRSASLENRSGIIITIDPNTKNTQKVVDDLKSAI 115

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ---RIDQIGI 176
             +   L  + +  ++   T     ++    +        +  + E+  +     +++  
Sbjct: 116 DRIQ-DLPTEVEDPIVTEITTARQPVIEIHLSSAINDGKTLLNAKELRDRAKILEEKLKD 174

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
             +  +         ++  + DP +LR +  ++ ++     L N +  G     +     
Sbjct: 175 IPAVARITKRGWREREMKVDLDPDKLRSMSLSSTQVISALRLRNINFPGGNINEKTREII 234

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  +   EI                              R         + +    
Sbjct: 235 VRTVGEFDSAEEIE-------------------NVFIRTNDAGRSVRIRDVARVTEGFED 275

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                     +        + +      ++ +  +       S     +           
Sbjct: 276 SEYLDKSNGNIAIALTVIKREKADAISVVDESKKVVEEFIKSSNGTIKHAFVNDLSKYIR 335

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
               +          LV   LF+ +   +  L+    I ++V +T   ++ +G TL L S
Sbjct: 336 RRLGVLTSNAISGLFLVTASLFVFL-GWRMALMTALGIPISVAMTFVAMNYMGLTLNLIS 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+++ +G+ VD  I++ E +       +  F +   G S   + +  +  T + A   
Sbjct: 395 MMGLIIVVGILVDDAIIICENVYRHLEMGEEPFEAAMRGTSEVLAPVTATVTTTIAAFGP 454

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G  +    + + LS+L S+F A  ++ + +  + +   MK         F  
Sbjct: 455 MLFMTGIFGKFIHSIPLVVILSLLSSLFEAFFMLPSHLYDVSKATDMKGEVKEESHWFVK 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG-----VLANRP 588
             +   + F+R         +   +            +G        +      V A   
Sbjct: 515 FKERTYLPFLRFALLNRWKMVGLLVGLFVFSLAIQTKFGKFKLFPGAIETFQVRVTAETG 574

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L      + +++         + E         Q   +   T+  +   + +  + P 
Sbjct: 575 LKLEETDRFIRAIEHSIAKLPEGEVENFISRVGIIQKDPNDPFTKRGKNYAQVMVYLTPD 634

Query: 649 STIQNTEIVGPKISRELIR 667
              + +     ++ RE  +
Sbjct: 635 DNRERSTEKIIEVVRENTK 653



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 89/239 (37%), Gaps = 5/239 (2%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            R        G  S  + DG++   V        S ++   LE  +     I         
Sbjct: 834  RLTSYDRNPGRASINHLDGKRLLTVTSNIDETVSTSRQVNLEAKQLTEGIIAKYPGYSVR 893

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFAL 713
                 K + E +       ++  + + + +   F+     L  ++ +   +   +  F L
Sbjct: 894  FSGENKDTEESMASLGRAFLVGLLIIYMILASLFRSLAQPLIVMSAIPFAVIGVIFAFLL 953

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G  F+  A   ++ L G  VND +V+ D     +++   S S  +L+ ++ +  L   +
Sbjct: 954  HGQPFSFLAFLGIIGLAGVVVNDSIVLVD-CANQLRIEDPSKSTFELLMEAGSIRLRAVM 1012

Query: 774  YTSMAAFISVLP-MAVWGG--SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             T++   + +LP     GG    +   A+   +G+  A   ++ +     L +Y +R +
Sbjct: 1013 LTTVTTVLGLLPTAYGIGGKDPFLVPMALAFGWGLAFATFITLIMVPVFYLNLYMFRDR 1071



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 81/257 (31%), Gaps = 9/257 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +  N       +R      +  + S        N  + L     +      V++  KK +
Sbjct: 252 IRTNDAGRSVRIRDVARVTEGFEDSEYLDKSNGNIAIALTVIKREKADAISVVDESKKVV 311

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF---KWYFALGAITT 699
            E +  S           +S+ + R+  V    +   + +     F    W  AL     
Sbjct: 312 EEFIKSSNGTIKHAFVNDLSKYIRRRLGVLTSNAISGLFLVTASLFVFLGWRMALMTALG 371

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  T       G+  NL ++  ++ ++G  V+D +++ + +    +         +
Sbjct: 372 IPISVAMTFVAMNYMGLTLNLISMMGLIIVVGILVDDAIIICENV---YRHLEMGEEPFE 428

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              +  +E L     T      +  PM       G  I S  + +   ++ +   + F+ 
Sbjct: 429 AAMRGTSEVLAPVTATVTTTIAAFGPMLFMTGIFGKFIHSIPLVVILSLLSSLFEAFFML 488

Query: 817 APILLFIYDWRAKNARI 833
              L  +         +
Sbjct: 489 PSHLYDVSKATDMKGEV 505


>gi|300779481|ref|ZP_07089339.1| possible acriflavin resistance protein [Chryseobacterium gleum ATCC
           35910]
 gi|300504991|gb|EFK36131.1| possible acriflavin resistance protein [Chryseobacterium gleum ATCC
           35910]
          Length = 1040

 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 66/581 (11%), Positives = 149/581 (25%), Gaps = 53/581 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + N     +  ++  +GL         +     FP  M                + L  D
Sbjct: 8   KYNKPFFFIALLLISLGLFT-----FSKMQTALFPEVMFPK-------------VKLIAD 49

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +        +     +K   +      +  + I + F       N    +  
Sbjct: 50  VGSIPIDRMMITVTKPIESAVKRIKGVTVVKSVTSRGSSDIQIYFNWGTDVNNAKLLIES 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  + + L        +    +    +              +      +          
Sbjct: 110 RLNEIKNLLPSGTN-IAVEGYNQSLFPVYGFTLESASDEIGLVGLRDLAMNSVRPLFSQI 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     +       +     D  ++  L      +                         
Sbjct: 169 EGVSTVILRGGKTKEFVIVPDIIKMSSLGIRPEDLVQLFR-------------------- 208

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N +++ +        L     +      + + DI     G R         I     V 
Sbjct: 209 QNNFVLSNGKISDFRRLYLTLTDNRINDAESLKDIIVKNSGQRLIRLSDIARIELQQQVE 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                +  ++     + A   A  ++                     
Sbjct: 269 FNAINTNGHPGVIVDLVKQPGVNLVQFAKDADAKAGEIKRLLPKGVKLRPYYNQSAFVGD 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      L ++V+ + +   +   V   ++ + +  TL  L + G TL + S+
Sbjct: 329 SIDSVIHTILEGLLLAIVVVILFLRSWRASTVVILTLPVTLGFTLITLHIFGITLNIMSL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATV 475
            GI   +GL +D  I++ E+I   +  +     F  +    +  Y  +  S+++ ++  +
Sbjct: 389 GGIAAAVGLFIDDIIVIVEQIYRMHEDHPEKDRFEVVKDAITDLYPAMVGSSLSTIVIFL 448

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
                G   G   +  A+TM L+++ S F    +   + + I       S   +  +   
Sbjct: 449 PFVLMGGLAGAFFKELAVTMELTLVCSFFATWIVTPVLHLLIGYRPHKNSHSHDEQNINK 508

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
                        R   +  S +F I       +  L  G 
Sbjct: 509 YTWLTKL-----YRKPFLAYSFIFFIIFAGWFSSRQLQTGF 544



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 105/296 (35%), Gaps = 13/296 (4%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP--VDLSVVRSNLESLQ 602
            R     +S         L  T   N   D +    + V  +    + LS +       Q
Sbjct: 207 FRQNNFVLSNGKISDFRRLYLTLTDNRINDAESLKDIIVKNSGQRLIRLSDIARIELQQQ 266

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
           +   +          +  ++    + V   +  +    +I  ++P               
Sbjct: 267 VEFNAINTNGHPGVIVDLVKQPGVNLVQFAKDADAKAGEIKRLLPKGVKLRPYYNQSAFV 326

Query: 663 RELIRKGIVGVIISAI-AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
            + I   I  ++   + A+++ I     W  +   I TL + +  TL    +FGI  N+ 
Sbjct: 327 GDSIDSVIHTILEGLLLAIVVVILFLRSWRASTVVILTLPVTLGFTLITLHIFGITLNIM 386

Query: 722 AVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           ++  +   +G  ++D +V+ +   RM ++           +++  +I +     V +S++
Sbjct: 387 SLGGIAAAVGLFIDDIIVIVEQIYRMHEDHPEKDR----FEVVKDAITDLYPAMVGSSLS 442

Query: 779 AFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +  LP  + G   G+     A+ M   +V +  ++  +   + L I     KN+
Sbjct: 443 TIVIFLPFVLMGGLAGAFFKELAVTMELTLVCSFFATWIVTPVLHLLIGYRPHKNS 498


>gi|306823930|ref|ZP_07457304.1| MMPL family integral membrane protein [Bifidobacterium dentium ATCC
           27679]
 gi|309802366|ref|ZP_07696473.1| MMPL family protein [Bifidobacterium dentium JCVIHMP022]
 gi|304552928|gb|EFM40841.1| MMPL family integral membrane protein [Bifidobacterium dentium ATCC
           27679]
 gi|308220966|gb|EFO77271.1| MMPL family protein [Bifidobacterium dentium JCVIHMP022]
          Length = 936

 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 68/522 (13%), Positives = 173/522 (33%), Gaps = 70/522 (13%)

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGL 426
               LI L M+       ++  F+  + V + +A +  + +  T+ S A    +++G+ +
Sbjct: 187 LAFALIALLMMFGSLVAAVLPLFTAVVGVGVGVATIYTMTSWFTISSTAPMLAVMIGLAV 246

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
            +D  + +  R R++      V  S+    + A S +  + +T +IA + LF  G   + 
Sbjct: 247 GIDYALFLISRHRDQLSDGLEVEESIARSVATAGSAVIFAGLTVIIALLGLFVAGIPFLT 306

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
              +     +L+++  A ++V A++ F  +    +       SR  L       + +   
Sbjct: 307 TMGVAAAFGVLVAVTVAETLVPALLGFAGKRLIPRKRANVKTSRRSLTNRKSHDRRIART 366

Query: 547 FWGVGISILFSICSICLLFTHG--------------------------------LNYGID 574
           +  +  +   ++  +  +                                     ++G  
Sbjct: 367 WVRLVTAKPLAVVVVITVALSALALPAANLRLALPDNSVEEIGTPARDAYDAVAEHFGPG 426

Query: 575 FKGGIQLGVLANRPVD-------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
           F G + L     +  D       ++     L  ++   ++  N  G+   +  +      
Sbjct: 427 FNGPLILTADIIQSTDPIGLANRIADDIRRLPGVKAVPLATPNPKGDTGIIQIVPETGPS 486

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV------IISAIAML 681
             A  +++  ++ K    +     +        ++ ++  K    +      ++    +L
Sbjct: 487 DAATEQLVRELRGKYQYFLDTYDTETAVTGITAVAIDVSSKLGAALLPFGLLVVGLSLIL 546

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALF---------------GIEFNLTAVAAV 726
           + +  R  W   L A    +L +    G                    G   +   +  +
Sbjct: 547 LAMVFRSIWV-PLKATAGYLLSVLAAFGVTTWVFQLGHGAELIRVQRVGPVISFLPIILM 605

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
             L G +++ +V +  R+R+    Y      +  +++         V  +    +SV   
Sbjct: 606 GVLFGLAMDYEVFLVSRIRE---HYAHHGDAKAAVEEGFASA-STVVVAAATIMLSVFAA 661

Query: 787 AVW-GGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDW 826
            +  G + I   A  +A G+ V A    + +   +L  +   
Sbjct: 662 FIPEGSATIKPIAFSLAVGMFVDAFVVRLTLVPAVLALLGKR 703



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 79/258 (30%), Gaps = 25/258 (9%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V          V+  +       I    F+   N L         S A+     ++   
Sbjct: 104 QVTLAADPFSETVQDAVSEDGRAAIIAIQFEVPFNELDSQVKSKIASDAKALQDALMDGA 163

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +T     +       + P             + ++   + + +         + A+  L 
Sbjct: 164 VTYCGGAAYRNAIPSLSPTE----------ALGLAFALIALLMMF----GSLVAAVLPLF 209

Query: 702 -------LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                  + +       + F I      +A ++ L    ++  + +  R R  +      
Sbjct: 210 TAVVGVGVGVATIYTMTSWFTISSTAPMLAVMIGL-AVGIDYALFLISRHRDQLSD---G 265

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
           +   + I +S+       ++  +   I++L + V G   + +  +  AFG++VA + +  
Sbjct: 266 LEVEESIARSVATAGSAVIFAGLTVIIALLGLFVAGIPFLTTMGVAAAFGVLVAVTVAET 325

Query: 815 IAAPILLFIYDWRAKNAR 832
           +   +L F         R
Sbjct: 326 LVPALLGFAGKRLIPRKR 343


>gi|253581571|ref|ZP_04858796.1| RND superfamily resistance-nodulation-cell division antiporter
           [Fusobacterium varium ATCC 27725]
 gi|251836641|gb|EES65176.1| RND superfamily resistance-nodulation-cell division antiporter
           [Fusobacterium varium ATCC 27725]
          Length = 1013

 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 74/600 (12%), Positives = 173/600 (28%), Gaps = 43/600 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +    +   G+L      L +  ++  P+                  +  +  
Sbjct: 10  RKPATATMFIISMIFFGIL-----GLKKMPIEMLPNINKPTVR---------IRIKWDGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V+  +    +++   ++            Q+ I + F      E     +   +  
Sbjct: 56  TPSDVDKMITRKIEDVLPNVEGIVEYTSESSAEQSLIFVKFKYGTDVETKITLIQNEINQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + +K   D K+  +  ++  ++  +             +E            +       
Sbjct: 116 IRNKFPDDMKEPSIRKSSMSDVPAITFSMAGGDR----MEMRSYAENNLKPMLERISGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++  E DP++L         +                        +    
Sbjct: 172 QIQVFGGQEQEVSVEVDPNKLENYNLGIMDVYNKM--------------------NKASV 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +   +   G          + +T   + +I                 I           
Sbjct: 212 NLPGGILREGEKEYLIKIEAEIETADQIKEIVLSNKNGHLLKLKDIAKIQVAPKDRTSIY 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I S     +    +     +    R       +   E  +    L S S 
Sbjct: 272 RKNGKDSIVVIVSKTDDGNSVAIVNETKKIIESNRGSLPINTVLNYEFDSSVTILNSISN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K +      L  ++LF+ +      L+   +I +++I T  LL++ G ++ L S+ G+ 
Sbjct: 332 VKSSGLQGLVLASVILFIFLKSVSATLIIAVAIPISIIFTFFLLNIQGISINLISLMGLS 391

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           LGIG+ VD++++V + I     +  ++   +   G       +  S +T + A + L F 
Sbjct: 392 LGIGMLVDNSVVVVDNIFRHMTELGKTRLQAAKDGAEEMALPVLASTMTTVAAFLPLVFQ 451

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G            +  S+L S+  +++ V  +   ++  KK  + +   +  F  I   
Sbjct: 452 EGLAKEQFNNLCYAISYSLLASLVISLTFVPMIASKVMDSKKDLNAEGKIMINFRKIYVA 511

Query: 538 IAIQFMRAR-FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                +R R      +++LF+          G       +G   +        D++    
Sbjct: 512 TLKWAIRHRGAVLGILAVLFAGSMFIASKIGGRYIPTVDEGRYAVVAKLPSGADVNKADR 571



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 83/261 (31%), Gaps = 13/261 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            ++ +     + +S V           I  ++   +      L+ +     AQ  V+  ++
Sbjct: 755  RITLPTGGNIRISDVAEFRAEEGPSKIEKKDKKKKIVIYANLKDELDLETAQKLVITTLE 814

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                                ++  +L     + V    +   I +W    +      I +
Sbjct: 815  DMGYPDGLTYGTGGKSADMAEMGAQLKSTFAIAV---FLIYFILVWQFESFIMPFVIILS 871

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + L  T         G+  +       + L G  VN+ +V+ D +  N++      +   
Sbjct: 872  IPLSTTGAFYALYAAGLSIDAMVSVGFVMLAGIVVNNAIVLIDFI--NIRRAA-GDNMNK 928

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +  +    L   + T++   + ++P+      G  +    +  + FG+  A   ++ + 
Sbjct: 929  ALITAGKTRLRPILMTTLTTVLGMIPLMFSNGEGSEIYKGMSFVVVFGLSTATLLTLVVI 988

Query: 817  APILLFIYDW----RAKNARI 833
                  I D+    R    ++
Sbjct: 989  PVFYYLIDDFILVMRRFRKKL 1009



 Score = 43.9 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 76/204 (37%), Gaps = 6/204 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               +++E  +  +     L+   ++ +        +   G+ G++++++ + I++    
Sbjct: 296 NETKKIIESNRGSLPINTVLNYEFDSSVTILNSISNVKSSGLQGLVLASVILFIFL---K 352

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + I  T     + GI  NL ++  +   IG  V++ VVV D + ++M
Sbjct: 353 SVSATLIIAVAIPISIIFTFFLLNIQGISINLISLMGLSLGIGMLVDNSVVVVDNIFRHM 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                +            E     + ++M    + LP+    G     F   + + I  +
Sbjct: 413 TELGKTR--LQAAKDGAEEMALPVLASTMTTVAAFLPLVFQEGLAKEQFN-NLCYAISYS 469

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
             +S+ I+   +  I      + +
Sbjct: 470 LLASLVISLTFVPMIASKVMDSKK 493


>gi|239917367|ref|YP_002956925.1| heavy metal efflux pump, cobalt-zinc-cadmium [Micrococcus luteus
           NCTC 2665]
 gi|281414149|ref|ZP_06245891.1| heavy metal efflux pump, cobalt-zinc-cadmium [Micrococcus luteus
           NCTC 2665]
 gi|239838574|gb|ACS30371.1| heavy metal efflux pump, cobalt-zinc-cadmium [Micrococcus luteus
           NCTC 2665]
          Length = 1077

 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 60/515 (11%), Positives = 143/515 (27%), Gaps = 40/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + ++   I   G+L A             P                    +     
Sbjct: 11  RRALVALVTVFIAVFGVLSAGQLKRELIPPLELPVIS--------------VSTLYPGAS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V+  +    +     ++       + +   N + L FA          +V   +  +
Sbjct: 57  PEVVDAQVGEPLETALQAVEGLESSRSTSQSGFNAVQLEFAYGTDLNRARSQVDRVVANL 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  + +       +  +  ++    + D+ ++    ++ +++     ++   +    
Sbjct: 117 GPQLPEEAET-SSFAGSVSDFPVLFLALSGDEDLNTLRRRAEDVL---APRLQKIDGVRG 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DP+ L     TT+ ++                             
Sbjct: 173 ADVLGGTDENVSVVPDPAALAAAGLTTSDITDALEENAGLFPVGQVTEGATTYPVQAGSA 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           VED   + G                    +                ++    A       
Sbjct: 233 VEDLEGLRG-------------------IVVAPSGDGEPRTLDEVADVTLVAAAPTSLTR 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +           +        L +         V          S    
Sbjct: 274 TDGVPTLSVSVTATPDADLVAVSQAVRDALPELASLVGGGADLTVVFDQAPFIQQSIDTL 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +     ++V+ + +L  +  LV   SI L+++  L  ++  G +L   ++  + +
Sbjct: 334 FQEGLLGLAFAVLVIAVFLLSVRSTLVTAVSIPLSLLAALIGVAAFGYSLNTLTLGALTI 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG  VD  I+V E IR           ++  G     + I  S + ++   + + F G 
Sbjct: 394 SIGRVVDDAIVVVENIRRHLGLGADRRTAILDGTREVATAITASTLVSVSVFLPIAFVGG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA+T  +++L S+  A++IV  +  + 
Sbjct: 454 LAGELFRPFAVTATVALLASLVVALTIVPVLCWWF 488



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 92/266 (34%), Gaps = 17/266 (6%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G   + V  +   +   +    +   +          +    + +            V 
Sbjct: 237 EGLRGIVVAPSGDGEPRTLDEVADVTLVAAAPTSLTRTDGVPTLSVSVTATPDADLVAVS 296

Query: 636 EMVKKKITEIV-------PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
           + V+  + E+         L+ + +      +    L ++G++G+  + + + +++    
Sbjct: 297 QAVRDALPELASLVGGGADLTVVFDQAPFIQQSIDTLFQEGLLGLAFAVLVIAVFLL--- 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ L +   L   A FG   N   + A+   IG  V+D +VV + +R   
Sbjct: 354 SVRSTLVTAVSIPLSLLAALIGVAAFGYSLNTLTLGALTISIGRVVDDAIVVVENIR--- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +        R  I     E       +++ +    LP+A  G   G +   FA+     +
Sbjct: 411 RHLGLGADRRTAILDGTREVATAITASTLVSVSVFLPIAFVGGLAGELFRPFAVTATVAL 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           + +   ++ I  P+L + +    +  
Sbjct: 471 LASLVVALTIV-PVLCWWFLRAPRRG 495



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 69/208 (33%), Gaps = 5/208 (2%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                         +     D      V   V + +  +     +        +   +  
Sbjct: 794 VPARVTSSNGERTAVVTVTPDDEDLGAVSRRVTQAVAALDLPEGVTAAVGGAAEQQAQTF 853

Query: 667 RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           R   + ++ +   + + +   F      L  + ++    T         G    L+ +  
Sbjct: 854 RDLGLALLAAVATVYVVLVATFNSLRQPLVLLVSIPFAATGVFLALLATGTPLGLSTMIG 913

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +L L+G  V + +V+ D +  N       ++  + I+      +   V T++A  +++ P
Sbjct: 914 LLMLVGIVVTNAIVLIDLI--NQYRRDRGMTLDEAIEVGALNRVRPVVMTALATVLAMTP 971

Query: 786 MAVWGGSVIGSF-AIPMAFGIVVAASSS 812
           MA  G +    F + P+A  +V    SS
Sbjct: 972 MA-LGVTGHAGFISQPLAVAVVGGLVSS 998


>gi|329122116|ref|ZP_08250724.1| protein-export membrane protein SecD [Dialister micraerophilus DSM
           19965]
 gi|327466923|gb|EGF12439.1| protein-export membrane protein SecD [Dialister micraerophilus DSM
           19965]
          Length = 424

 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 152/401 (37%), Positives = 235/401 (58%), Gaps = 27/401 (6%)

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  L       I +       ++V + AI Q + I+++RI+++G++E  IQR G +RI+I
Sbjct: 49  RQGLDLQGGTHIVMQAEDTPQNKVTNEAIGQVINIMQKRINEMGLTEPIIQREGGNRIII 108

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPGE+DP +  + +G TA + F                                V+++G
Sbjct: 109 ELPGEKDPKKAIETIGKTAVLEFKDED--------------------------GNVKLTG 142

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             L  A          P+V + F E GA +F  +T  NIG+ + + LDG +LT PV+N+A
Sbjct: 143 EDLKNAKEQVGQNK-SPLVALEFTENGATKFANLTAANIGRHIGIYLDGEMLTNPVVNEA 201

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           I  G A ISG  T+E A  LA +LR+G+LP+K++++E R VG  LG DS  K   A   G
Sbjct: 202 ITGGSAVISGQRTLEEAKDLAILLRSGALPVKMSVLEVRTVGPSLGQDSKDKSVTAFTIG 261

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           L LIVLFM+ +Y   G VA+ ++ + V++ L +LSLL ATLTLPSIAG++L IG+AVD+N
Sbjct: 262 LSLIVLFMLCMYRVAGFVANVALLVYVLILLEILSLLNATLTLPSIAGVILSIGMAVDAN 321

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           IL+ ER +EE    + +  ++  GF RA++TIFD+N+T +I + +LFF G G V+GFA +
Sbjct: 322 ILIFERFKEEIESGKVLRMAIHSGFKRAFTTIFDANMTVIITSCILFFLGSGTVKGFAFS 381

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           +GL + ISMFTAI++ R +++ +I    + +       R +
Sbjct: 382 LGLGVAISMFTAITVSRTLLMMLIDASWIHNPWWFGGKRGY 422



 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 69/166 (41%), Gaps = 4/166 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP + ++   K +    I    +++++   ++      A   L++ +   L   +L    
Sbjct: 243 GPSLGQDSKDKSVTAFTIGLSLIVLFMLCMYRV-AGFVANVALLVYVLILLEILSLLNAT 301

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L ++A V+  IG +V+  +++++R ++ +    +    R  I              +M
Sbjct: 302 LTLPSIAGVILSIGMAVDANILIFERFKEEI---ESGKVLRMAIHSGFKRAFTTIFDANM 358

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              I+   +   G   +  FA  +  G+ ++  ++I ++  +L+ +
Sbjct: 359 TVIITSCILFFLGSGTVKGFAFSLGLGVAISMFTAITVSRTLLMML 404



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 17/133 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           +          +I  I +       L                I  GLDL+GG+H+V++  
Sbjct: 19  KKGALARFFGVIIVIIAVFAFTVGRL-------------AGNIRQGLDLQGGTHIVMQAE 65

Query: 61  DED--DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTL 117
           D       N  +    + ++  + + G+    +++   N+I +     +  +   + +  
Sbjct: 66  DTPQNKVTNEAIGQVINIMQKRINEMGLTEPIIQREGGNRIIIELPGEKDPKKAIETIGK 125

Query: 118 FLQGVNSKLNVDP 130
                    + + 
Sbjct: 126 TAVLEFKDEDGNV 138


>gi|163794106|ref|ZP_02188079.1| AcrB/AcrD/AcrF family protein [alpha proteobacterium BAL199]
 gi|159180720|gb|EDP65239.1| AcrB/AcrD/AcrF family protein [alpha proteobacterium BAL199]
          Length = 1069

 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 67/498 (13%), Positives = 142/498 (28%), Gaps = 32/498 (6%)

Query: 54  SHLVL---EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKEN 110
            +++L    +  +D     L+    ELRS +        +  +    I L F      ++
Sbjct: 46  IYVLLNHEGISPEDAERLLLRPMEQELRSIV-GVKEMRSTAHEGGANIVLEFDAGFDADS 104

Query: 111 IADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQR 170
             D V   +     +L  +  +  +         +++   + +      +  +    R  
Sbjct: 105 ALDDVREKVDIAKPELPSETDEPTVHEVNFSLFPVMIVTLSGEVPERDLLLMA----RDV 160

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
            D+I      +    + +    L    DP RL         +                  
Sbjct: 161 RDEIKGLPDVLDAKLTGQREELLEVVIDPLRLESYGLRATTVLEAV-------------- 206

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                   +  L+      +G               + ++D      G           +
Sbjct: 207 ------SRSNQLIAAGTLDTGSGRFPIKVPGLYHGVQDILDQPIKAQGDAVVRIRDVATV 260

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
            +          L          + +   +   TI     +     +G          + 
Sbjct: 261 QQGFKDRGSYARLNGQPAIAIEVTKRTGANIISTISDVRAVVGEATSGLPDTIDVTFSQD 320

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                    +  +        LV+IV+   +     GLV   +I  + +L + +LS LG 
Sbjct: 321 KSDQIKLMLTDLQNNVTSAILLVMIVIVAAMGLRSAGLVGI-AIPGSFLLGMLVLSFLGL 379

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           T+ +  +  ++L +G+ VD  I+V E    +  +      +      R    I  S  T 
Sbjct: 380 TINIVVLFSLILAVGMLVDGAIVVTELADRKMAEGLPKSAAYAEAGKRMAWPIIASTATT 439

Query: 471 LIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           L A   L F+    G  ++   IT+  ++  S+  A+  + A+   I +           
Sbjct: 440 LAAFFPLLFWPGVVGEFMKFLPITLLATLAASLLMALIFIPALGGLIGKASAPDERSRKQ 499

Query: 528 LSRFFLIPDCIAIQFMRA 545
           L+            F   
Sbjct: 500 LAAAETGSVDEITGFTGF 517



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 85/228 (37%), Gaps = 24/228 (10%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +    + ++    + V     ++ ++  + +    S ++ T     +  +E     +   
Sbjct: 808  DGQPSITVRADVVEGVLPNDKVQELRAWLQDANVPSIVEATFKGEDEEQQEAQAFLVKAF 867

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV----AAVLTL 729
             ++   M I +  +F  +++   I + +  I  T+G      +  N   +      V+ L
Sbjct: 868  GVALFIMAIILVTQFNSFYSALLILSAV--IMSTIGVMIGLLVTGNPFGIVMSGIGVIAL 925

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
             G  VN+ +V+ D       L   +   RD I ++  + L   + T++   + ++PM + 
Sbjct: 926  AGIVVNNNIVLIDTF---DTLKKDNADVRDAILRTGAQRLRPVLLTTITTILGLMPMVLQ 982

Query: 789  -----------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLF 822
                       +G        S +  + FG+  A   ++ +    L+F
Sbjct: 983  MNIDFVTREVTYGAPSTQWWVSLSTAIVFGLAFATVLTLLVTPAALMF 1030



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/233 (9%), Positives = 70/233 (30%), Gaps = 3/233 (1%)

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
              +   GL +G+       +    +  V +  V +  +  +      +        +  
Sbjct: 224 RFPIKVPGLYHGVQDILDQPIKAQGDAVVRIRDVATVQQGFKDRGSYARLNGQPAIAIEV 283

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +    + ++    +  V  + T  +P +             + ++      V  + + +
Sbjct: 284 TKRTGANIISTISDVRAVVGEATSGLPDTIDVTFSQDKSDQIKLMLTDLQNNVTSAILLV 343

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           +I I        A      +       +   +  G+  N+  + +++  +G  V+  +VV
Sbjct: 344 MIVIVAAMGLRSAGLVGIAIPGSFLLGMLVLSFLGLTINIVVLFSLILAVGMLVDGAIVV 403

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +      +     +       ++        + ++     +  P+  W G V
Sbjct: 404 TE---LADRKMAEGLPKSAAYAEAGKRMAWPIIASTATTLAAFFPLLFWPGVV 453


>gi|17158754|ref|NP_478265.1| cation efflux system protein [Nostoc sp. PCC 7120]
 gi|17134703|dbj|BAB77261.1| cation efflux system protein [Nostoc sp. PCC 7120]
          Length = 1058

 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 67/596 (11%), Positives = 175/596 (29%), Gaps = 52/596 (8%)

Query: 5   PWLVILYSMICCIGLLIALPNFL--PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            W ++   ++    +++ +       Q  LD FP+  P               + ++ + 
Sbjct: 7   KWSIVQRWLVVIGAMIVMMLGVYNLTQMPLDVFPNFAPP-------------QVEIQTEA 53

Query: 63  DDFVNGFLQMYSD-ELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  ++      + S +           S     + + + F            VT  
Sbjct: 54  PGLAPEEVESLVTLPIESAVNGTPGVETVRSSSGIGISVVRIIFNWGTDIYQARQLVTER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV----ISHAIEQSMEIIRQRIDQI 174
           LQ  + KL  + +   +   +    +I+     ID       +  +E    I     +++
Sbjct: 114 LQQASQKLPANIESPQISPISNPIGTILTYAFTIDSPGGKAKTDMMEVRRFIDLVVTNRL 173

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  Q +     + Q     DP++L+    +   ++                     
Sbjct: 174 LAVPGVSQVITYGGDVRQYQVLVDPAKLKAFDVSLEDVTTA------------------- 214

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +            I                 + +                   ++    
Sbjct: 215 -AAKANNNAAGGFLIDPDQELLIRGIGRITAIEDLQKSVITARDGTPVLLRDIADVQIGA 273

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
           A+               +   + Q              A L++         V  R    
Sbjct: 274 ALKRGDGSFNTQPAVVVLIDKQPQADTPTVSRAVETAIAELKSSLPANVKYTVTFRQESF 333

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +      +      +V I+L M ++  +  ++   +I L+V++ + +L+L G  +  
Sbjct: 334 IEDAIENVTSSLRDGTIIVSIILLMFLMNWRTAIITLSAIPLSVLIGMMILNLFGQGINT 393

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNI 468
            ++ G+V+ IG  VD +I+  E      ++NQ        F  +        +++  S +
Sbjct: 394 MTLGGLVVAIGSVVDDSIVDMENCYRGLQENQKAENPVHPFQIVYDTSVEVRTSVILSTV 453

Query: 469 TALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             ++    +F      G           +SIL S   A+++  A+   ++  +++   + 
Sbjct: 454 IIVVVFAPIFTLSGIEGRIFAPMGWAYLVSILSSTLVAMTLSPALCAILLANQRLPDDET 513

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                   +   +    ++     +  +I   + S+ +  + G  +  +F+    +
Sbjct: 514 WVTRWSQRLYRPLLNFSIKRPSVVILTAIAAFVASMVIFSSLGRVFLPEFQERTLV 569



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 87/252 (34%), Gaps = 7/252 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           I+      +      PV L  +        +              ++  +    D+   +
Sbjct: 245 IEDLQKSVITARDGTPVLLRDIADVQIGAALKRGDGSFNTQPAVVVLIDKQPQADTPTVS 304

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWY 691
           R +E    ++   +P +              + I      +    I + +I +     W 
Sbjct: 305 RAVETAIAELKSSLPANVKYTVTFRQESFIEDAIENVTSSLRDGTIIVSIILLMFLMNWR 364

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MRKN 747
            A+  ++ + L +   +    LFG   N   +  ++  IG  V+D +V  +     +++N
Sbjct: 365 TAIITLSAIPLSVLIGMMILNLFGQGINTMTLGGLVVAIGSVVDDSIVDMENCYRGLQEN 424

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            K       F+ + D S+ E     + +++   +   P+    G     FA PM +  +V
Sbjct: 425 QKAENPVHPFQIVYDTSV-EVRTSVILSTVIIVVVFAPIFTLSGIEGRIFA-PMGWAYLV 482

Query: 808 AASSSIFIAAPI 819
           +  SS  +A  +
Sbjct: 483 SILSSTLVAMTL 494



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 91/250 (36%), Gaps = 13/250 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + L+ V           I+ +N          +  +   SV      ++ +
Sbjct: 782  LVDTPNEQKIPLAAVAKIDYGTGPNTINRENVSRLIVVSANVSGRDLGSVVDEIRAKVQQ 841

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +                   + S+ L+  G + +I+  IA+L+Y  ++         I  
Sbjct: 842  QVQVPSGYFIQYGGQFESEQRASQNLLVFGSLSMIV--IAVLMYFAVK---SIPATLIIM 896

Query: 700  LILDITKTLGFFA--LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
              L +    G  +  L G   ++ ++   +TL G +  + +++ +        +   +  
Sbjct: 897  SNLPLALIGGVLSVALGGGILSVASMVGFITLFGVATRNGLLLVENYN---SKFAIGMPL 953

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF 814
            R++I +   E L   + T++ + + ++P+ +    G  ++   AI +  G+  + + ++ 
Sbjct: 954  REVISQGSIERLVAILMTALTSALGMVPLVIGTGAGKEILQPLAIVVLGGLFTSTALTLL 1013

Query: 815  IAAPILLFIY 824
            +   +     
Sbjct: 1014 VLPALYSKFG 1023


>gi|114570887|ref|YP_757567.1| CzcA family heavy metal efflux protein [Maricaulis maris MCS10]
 gi|114341349|gb|ABI66629.1| heavy metal efflux pump, CzcA family [Maricaulis maris MCS10]
          Length = 1046

 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 67/603 (11%), Positives = 153/603 (25%), Gaps = 42/603 (6%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
             L  L      IG ++          +D FP   P               +  E +   
Sbjct: 25  RLLAALAFAFVLIGGIVT----FRTMPVDAFPDVTPTL-----------VQVFTETEGLA 69

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V  ++    +   + L +      +     + + + F D          V   LQ  
Sbjct: 70  PEEVERYVTFPVETSMNGLPRLREVRSTSNFGLSVVNIYFEDGVDIYWARQLVGERLQQA 129

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        +   T     I+             ++       Q    +       +
Sbjct: 130 REEIPEGFGDPGMGPITTGLGQILFYFLQTSDENLDGVQLRTLQDWQVKFDLQTVRGVTE 189

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L       Q      P  L +       +       N +           + +     L
Sbjct: 190 VLSLGGFEQQYQINVRPDALLRYQLAIEDIVTAVESNNANAGAQFLIENSEQYTVRAVGL 249

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   ++S                     I   E G         +             +
Sbjct: 250 AQGIHDLS-------------------DIIVKVEDGVPVRVRDVANIDIGGAPRQGMATM 290

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +       + N  I         +     P    +           +    
Sbjct: 291 DGQGEVVAGLVLKLLGANTNEVIARVHDRMERINEALPPGVTAVPYYDQSELVGAAVRTM 350

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                  A LV I+LF+ +   +  L+   SI  +V   L  +   G +  L S+ GI +
Sbjct: 351 TTALWQGALLVAIILFLFLRGWRPSLIVVASIPFSVGFALLAMQFFGVSANLMSLGGIAI 410

Query: 423 GIGLAVDSNILVNER---IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            IG+ VD  +++ E    I    ++ +     +    +     +  + +  ++  V +  
Sbjct: 411 AIGMMVDGAVVIVENANRILTAAKEGEDKRALIASACAEVLQPLIFAILIVVVVFVPILT 470

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R  A ++  ++  S+  A+ +  A  +  ++  +  S    P         
Sbjct: 471 LEGVEGKMFRPLAFSVVFAMAGSLVFAVLLAPAASMLGLKVGERSSGSDKPDFYERSFAP 530

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +     +     V  + +  +                 +G + + +     + L   R 
Sbjct: 531 LVRFFVHKRWAALVLAAAMLIVGGAIFPRLGSEFTPRMNEGDLLVRLTMAPSISLPEARE 590

Query: 597 NLE 599
            + 
Sbjct: 591 TVT 593



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 86/222 (38%), Gaps = 4/222 (1%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           ++       ++  +  GE    + L+    ++      +    ++I E +P         
Sbjct: 278 DIGGAPRQGMATMDGQGEVVAGLVLKLLGANTNEVIARVHDRMERINEALPPGVTAVPYY 337

Query: 657 VGPKISRELIRKGIVGV--IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
              ++    +R     +      +A+++++++R  W  +L  + ++   +   L     F
Sbjct: 338 DQSELVGAAVRTMTTALWQGALLVAIILFLFLR-GWRPSLIVVASIPFSVGFALLAMQFF 396

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G+  NL ++  +   IG  V+  VV+ +   + +         R LI  +  E L   ++
Sbjct: 397 GVSANLMSLGGIAIAIGMMVDGAVVIVENANRILTAAKEGEDKRALIASACAEVLQPLIF 456

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +   +  +P+    G     F  P+AF +V A + S+  A
Sbjct: 457 AILIVVVVFVPILTLEGVEGKMFR-PLAFSVVFAMAGSLVFA 497



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 79/235 (33%), Gaps = 13/235 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + +++  +   Q         + +Q    +    + V E        I          
Sbjct: 804  SQVATVERIEGPRQITRENGQRYITIQTNVRERDIGSFVAEGQGAVAENIELPPGYFVEW 863

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFFALF 714
                ++ ++   +  + + ++   + + +   F    +   I   I L +   +    L 
Sbjct: 864  GGQFELQQQANARFAIVIPVTLGVVFLLLLFSFGRLKSAVLIIANIPLALVGGIAALWLT 923

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            G   ++ A    + L G ++ + +V+    DR  K  +L   + S    + ++       
Sbjct: 924  GQNLSVPASVGFIALFGIALGNGMVLVSFLDRFAKE-RLDVDAFSVEAAVRRA-----QP 977

Query: 772  SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             + T+    + ++P+      G  V    A  +  G+V +   ++ +   +  + 
Sbjct: 978  VLMTATTTGLGLMPLLFASGIGSEVQRPLAAVVIGGLVTSTVLTLLVLPAVYKWF 1032


>gi|319900756|ref|YP_004160484.1| heavy metal efflux pump, CzcA family [Bacteroides helcogenes P
           36-108]
 gi|319415787|gb|ADV42898.1| heavy metal efflux pump, CzcA family [Bacteroides helcogenes P
           36-108]
          Length = 1045

 Score =  134 bits (335), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 78/690 (11%), Positives = 185/690 (26%), Gaps = 56/690 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  LV++ S++  +G      N      +D FP       +           ++ E   
Sbjct: 11  NNRLLVLVASILLMLGGTYTATN----MEVDVFPDLNAPTVV-----------VMTEAKG 55

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 56  MAPEEVERLVSFPVETAVNGATDVRRVRSSSTTGFSIVWVEFNWGTDIYKARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  +     L   +     ++  +   D       +           +I  +   
Sbjct: 116 VVKDALPQNVGNPTLGPQSSILGELMFVELTADSTSMQ--QLRTIADWNIRPRILATGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +     +P +++       ++       N +  G +             
Sbjct: 174 AQVTVMGGEIKEYQLLLNPDKMKHYGIGLNEVYAAVQNMNQNTAGGILYEY--------- 224

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                       ++     + +         I            V    IG     +   
Sbjct: 225 ---------GNEYIIRGMLSTNQIEKLSKSLIKSVNDVPIYLDAVAEVKIGNRAPKMGLA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P +   I       + + T +    LA + +     +K+N    R       S  
Sbjct: 276 SYNGKPSVVMTITKQPNTSTLDLTKQLDDALAEVQKTLPTDVKMNTDVYRQSRFIESSID 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ ++  +  +++  +I L ++ ++  L L+G T+   S+ G+
Sbjct: 336 NVKQSLLEGGIFVVIVLFIFLMNARTTVISLVTIPLALVASILALKLMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVF--------CSLDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N ++           +          I +S +  + 
Sbjct: 396 CIAIGSLVDDAIVDVENVYKRLRENHNLRKGERRKVMDVIYDASREVRMPILNSTLIIVA 455

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-------- 521
           + V LFF     G  +    I   +++  S   A+++   +  +++  +K+K        
Sbjct: 456 SFVPLFFLSGMEGRMLAPLGIAFIVALCSSTVVALTLTPVLCSYLLGKRKLKGDNENKEE 515

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              +       +    +       ++             I              +G   +
Sbjct: 516 KEPLIARKLKGIYTVALEWSIDHRKWVLGVTGAALVSALIVFSTLGRSFLPPFNEGSFTV 575

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +     + L          +   +S            R +            +E     
Sbjct: 576 SISTLPGISLEESDQIGRKAEKALLSIPEIKTVGRKTGRAELDEHALGVNNSEIEAPFIL 635

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                          +       +     +
Sbjct: 636 EDRSKDEVLADVRNKLKDIPGVNIEVGAPI 665



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/321 (12%), Positives = 96/321 (29%), Gaps = 14/321 (4%)

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
               +    +    +      +    A          + I  +              K  
Sbjct: 191 NPDKMKHYGIGLNEVYAAVQNMNQNTAGGILYEYGNEYIIRGMLSTNQIEKLSKSLIKSV 250

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             + +  +   ++ +     +          +                       + E+ 
Sbjct: 251 NDVPIYLDAVAEVKIGNRAPKMGLASYNGKPSVVMTITKQPNTSTLDLTKQLDDALAEVQ 310

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           K   T++   + +             + +  + G I   I + I++         + ++ 
Sbjct: 311 KTLPTDVKMNTDVYRQSRFIESSIDNVKQSLLEGGIFVVIVLFIFLM---NARTTVISLV 367

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMK-LYTT 753
           T+ L +  ++    L G+  N  ++  +   IG  V+D +V    VY R+R+N       
Sbjct: 368 TIPLALVASILALKLMGLTINTMSLGGMCIAIGSLVDDAIVDVENVYKRLRENHNLRKGE 427

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
                D+I  +  E     + +++    S +P+    G      A P+    +VA  SS 
Sbjct: 428 RRKVMDVIYDASREVRMPILNSTLIIVASFVPLFFLSGMEGRMLA-PLGIAFIVALCSST 486

Query: 814 FIA---APIL--LFIYDWRAK 829
            +A    P+L    +   + K
Sbjct: 487 VVALTLTPVLCSYLLGKRKLK 507



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 88/238 (36%), Gaps = 11/238 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            SN+  +                 + +            V ++ +K   E+      +   
Sbjct: 797  SNIADVTSSVGPNTINRENVARKIVISANVAGRDLLGVVKDIQQKVDAEVTLPEGYRVEY 856

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL-- 713
                +  +   R  +V  I S + + + ++ +F+      ++  L L +    G +A+  
Sbjct: 857  GGQFESEQAASRTLLVTSIFSILVIFMLLFNQFRSVMQ-SSVILLNLPLALIGGVYAIWM 915

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
                 ++ A+   ++L G +  + +++  R      L     S  + +     + L   +
Sbjct: 916  TNGVISIPAIIGFISLFGIATRNGMLLIARYND---LQAEGFSPLESVLHGSADRLNPIL 972

Query: 774  YTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             T++ + ++++PM +     G+ I S  A  +  G+  +   + FI  PI+  I + +
Sbjct: 973  MTALTSALALIPMVIGGDLPGNEIQSPMAKVILGGLFTSTLLNGFII-PIMYLIANKQ 1029


>gi|301168026|emb|CBW27612.1| putative transmembrane Acr-type transport protein [Bacteriovorax
           marinus SJ]
          Length = 1015

 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 49/549 (8%), Positives = 149/549 (27%), Gaps = 39/549 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +I  ++   +GL+      +  +    FP                         
Sbjct: 7   KRPATTIIFIAIFMVMGLVSIGNLIIEPTPKIEFPIIT--------------IQTTYGGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  S + +        R     + + F         + +V   ++ 
Sbjct: 53  SPEEIETQVLKRVEDAVSEISQIKKISSEARDSYGVVIIEFLIEADVNIKSIEVKDKVEA 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + +       + ++         I       D    +  E      ++   ++       
Sbjct: 113 IMNDFPSGADRPIIAKFDPLIKPIATLALMSD--KHNLTELFEYADKKLKTRLSAINGVA 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+  E D + + Q   +   +       N +  G     +  + S     
Sbjct: 171 TVDVFGGRERQINVELDNNLMIQNYLSIEDVINSVSSKNLNVPGGSINRKDSKVSVRFVG 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             E   EI  + +                         R     +   +      V    
Sbjct: 231 EFESVEEIKNLSIV--------------------SREGRTIKLSSVGTVSDSYKDVDSIA 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +       + T      +++          +        + +   
Sbjct: 271 RFNGKDTVGIAVKKLSDGDAVKIVGTLKSDLEVIKKELPEGMKLEIAVDTTRVTVDNTVG 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +   L +I+L + +   +  ++A   I  ++I T  ++ +   ++ + ++    
Sbjct: 331 TINSILLGVVLTIIILLVFLGDWRGAIIAAVVIPTSIISTFFIMDMSDFSINMMTLLAFG 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
             +G  + + +++ E I +  +  +    +   G       IF S+ T L+    L F G
Sbjct: 391 TCLGTLIANALIIIESIYKHLQMGKDPQLASIDGTKEVLLAIFASSGTNLVVFTPLAFMG 450

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  +  F +T+  + + S+  ++++   +   +++           +++        
Sbjct: 451 GIVGQFMVQFGMTVVYATIFSIMASVTLTPMLCSILLKDPSRLKGPFPFIAKITDRVIAW 510

Query: 539 AIQFMRARF 547
                +  F
Sbjct: 511 ITTQYKWFF 519



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 87/250 (34%), Gaps = 7/250 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     R + LS V +  +S +  D   +    +   +   +   GD+V     L+   
Sbjct: 242 SIVSREGRTIKLSSVGTVSDSYKDVDSIARFNGKDTVGIAVKKLSDGDAVKIVGTLKSDL 301

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA-MLIYIWIRFKWYFALGAIT 698
           + I + +P        +   +++ +     I  +++  +  ++I +     W  A+ A  
Sbjct: 302 EVIKKELPEGMKLEIAVDTTRVTVDNTVGTINSILLGVVLTIIILLVFLGDWRGAIIAAV 361

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            +   I  T     +     N+  + A  T +G  + + +++ + +    K        +
Sbjct: 362 VIPTSIISTFFIMDMSDFSINMMTLLAFGTCLGTLIANALIIIESI---YKHLQMGKDPQ 418

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
                   E L     +S    +   P+A  G   G  +  F + + +  + +  +S+ +
Sbjct: 419 LASIDGTKEVLLAIFASSGTNLVVFTPLAFMGGIVGQFMVQFGMTVVYATIFSIMASVTL 478

Query: 816 AAPILLFIYD 825
              +   +  
Sbjct: 479 TPMLCSILLK 488



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/177 (12%), Positives = 64/177 (36%), Gaps = 5/177 (2%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               +              V+  + KK +E+    +++       +   E  ++     +
Sbjct: 792 DKKSIIQLNGYLAKSNTGTVMGELTKKFSELDLPESVEYAYTGNAENQAESSQELGKAFM 851

Query: 675 ISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           ++ I   ++ + +   + F +   + ++     +           N+ ++ A++ ++G +
Sbjct: 852 LAVILTYMLLVAVLDSFVFPISIGSAILTSFLGSFALMFYTDQTVNIGSMMAMVMVVGLA 911

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVW 789
           VN+ +++   +    +     I  R+ I     E L   + TS+A     LP +   
Sbjct: 912 VNNAILM---IEYAQQKIAEGIEVREAIWLGAKEKLKPILMTSIAIIAGTLPQLFAL 965


>gi|51893581|ref|YP_076272.1| protein translocase subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51857270|dbj|BAD41428.1| protein translocase subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 416

 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 215/386 (55%), Gaps = 26/386 (6%)

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                I +   ++ +  V    I+ + ++I  RI+ +G+SE  +Q  G +RI++++ G  
Sbjct: 47  QGGAHIVLEGVESELGPVTPDTIQAARQVIENRINALGVSEPIVQVDGQNRIIVEIAGAT 106

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           D  + R+++G TA + F                             E    ++G  +  A
Sbjct: 107 DIDQAREVIGKTAVLKF--------------------------IDPEGNEVLTGNDVEKA 140

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
               +P     +V +     G  +F+E TR  +GKP+ ++LD  +++AP++ + IP G+A
Sbjct: 141 GVAQNPSGSGFIVTLKLKGEGPDKFYEATRKYVGKPIFILLDDEIISAPMVQEPIPGGEA 200

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
            I+GNFT+E AG LA ++  G+LP+KL  VE R V A LG+DS+ K   A   G+V ++L
Sbjct: 201 TITGNFTVEEAGTLANLINGGALPVKLVEVEARMVSATLGADSVAKSLRAGWIGIVGVLL 260

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FMI+LY   GL+AD ++ +  IL + +L  + A  TLP IAG++LGI +AVD N+++ ER
Sbjct: 261 FMILLYRIPGLLADIALGVYAILNMVVLLAIDAVFTLPGIAGLLLGIAMAVDGNVIIFER 320

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           I+EE RK + +   +D GF RAY T+ DS IT  IA  +L++ G G VRGFA+T+ +  +
Sbjct: 321 IKEELRKGKGLRSGIDAGFHRAYVTVLDSQITTAIAAAILWYLGTGPVRGFAVTLFVGTV 380

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSI 523
           +S+FTAI+  R ++   +        
Sbjct: 381 LSIFTAITFTRWLVKLAVDTGWFNKR 406



 Score =  106 bits (264), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 66/163 (40%), Gaps = 4/163 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
              +  + + K +    I  + +L+++ + ++    L A   L +     +         
Sbjct: 236 SATLGADSVAKSLRAGWIGIVGVLLFMILLYRIP-GLLADIALGVYAILNMVVLLAIDAV 294

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
           F L  +A +L  I  +V+  V++++R+++ ++        R  ID   +      + + +
Sbjct: 295 FTLPGIAGLLLGIAMAVDGNVIIFERIKEELR---KGKGLRSGIDAGFHRAYVTVLDSQI 351

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              I+   +   G   +  FA+ +  G V++  ++I     ++
Sbjct: 352 TTAIAAAILWYLGTGPVRGFAVTLFVGTVLSIFTAITFTRWLV 394



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 4/98 (4%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLK 82
               +   +  SA     + LGLDL+GG+H+VLE    +        +Q     + + + 
Sbjct: 22  GFYLTPHPQTGSARILQHMKLGLDLQGGAHIVLEGVESELGPVTPDTIQAARQVIENRIN 81

Query: 83  KEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
             G+    ++    N+I +  A +   +   + +    
Sbjct: 82  ALGVSEPIVQVDGQNRIIVEIAGATDIDQAREVIGKTA 119


>gi|332981505|ref|YP_004462946.1| protein-export membrane protein SecD [Mahella australiensis 50-1
           BON]
 gi|332699183|gb|AEE96124.1| protein-export membrane protein SecD [Mahella australiensis 50-1
           BON]
          Length = 443

 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 32/175 (18%), Positives = 83/175 (47%), Gaps = 4/175 (2%)

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             +    + + ++   I   A+L+++ + ++    L A   L+  I       A  G   
Sbjct: 265 ATLGAGAMERSVLAGAIGVAAVLLFMLLYYRLP-GLVADIALVTYILLVFLVLAGTGATL 323

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            L  +A ++  IG +V+  V++++R+++ +K   +  +    +D   +  L   + +++ 
Sbjct: 324 TLPGIAGIVLSIGMAVDANVLIFERLKEELK---SGKTLGAAVDAGFHRALSAILDSNIT 380

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             I+ + + V+G   I  FA+ +  GI+V+  +++ +   +L  + D+  KN ++
Sbjct: 381 TIIAGVVLLVYGTGTIKGFAVTLIIGIIVSMFTAVVVTRYLLKLVMDFGIKNLKV 435



 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 131/369 (35%), Positives = 223/369 (60%), Gaps = 23/369 (6%)

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
           +  +   I+  + + R R+D  G++E+TI + G  RI +++PG  D    + LLG TAK+
Sbjct: 87  EPDLDSKIDGVIGVFRNRLDSKGLTEATIAKQGERRIRVEIPGTTDLQEAQDLLGRTAKL 146

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
            F              G   +  SD      E   + +GI              +PVV +
Sbjct: 147 EF----------KDEAGNVIITGSDVRSAKPEYGADDTGI-------------TQPVVAL 183

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
             ++ GA++F E TR N+GK +++VLD +V+++P++   IP+GKAQI+G  ++E A  LA
Sbjct: 184 ELNDEGAKKFAEGTRANLGKTISIVLDDQVISSPMVKNEIPNGKAQITGMASMEEAANLA 243

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
            ++++G+LP+ + ++E R++ A LG+ ++ +   A   G+  ++LFM++ Y   GLVAD 
Sbjct: 244 NLIQSGALPVPVEVIEMRSIKATLGAGAMERSVLAGAIGVAAVLLFMLLYYRLPGLVADI 303

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++   ++L   +L+  GATLTLP IAGIVL IG+AVD+N+L+ ER++EE +  +++  ++
Sbjct: 304 ALVTYILLVFLVLAGTGATLTLPGIAGIVLSIGMAVDANVLIFERLKEELKSGKTLGAAV 363

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           D GF RA S I DSNIT +IA VVL  +G G ++GFA+T+ + I++SMFTA+ + R ++ 
Sbjct: 364 DAGFHRALSAILDSNITTIIAGVVLLVYGTGTIKGFAVTLIIGIIVSMFTAVVVTRYLLK 423

Query: 513 FIIRYKKMK 521
            ++ +    
Sbjct: 424 LVMDFGIKN 432



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 74/239 (30%), Gaps = 10/239 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    LVIL   I  + ++  +   +    +  +      + I  GLDL GG +LV E  
Sbjct: 25  RKTRSLVILIVFILILAIVSYI--AIAGLNIGIYVVKPLGSAIKQGLDLSGGVYLVYEAQ 82

Query: 62  EDD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTL 117
             D    ++  +       R+ L  +G+   ++ +    +I +    +   +   D +  
Sbjct: 83  VSDNEPDLDSKIDGVIGVFRNRLDSKGLTEATIAKQGERRIRVEIPGTTDLQEAQDLLGR 142

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +             +  +          + +        A+E + E  ++  +    +
Sbjct: 143 TAKLEFKD--EAGNVIITGSDVRSAKPEYGADDTGITQPVVALELNDEGAKKFAEGTRAN 200

Query: 178 ESTIQRLGSHRILIQLPGEQD--PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                 +     +I  P  ++  P+   Q+ G  +      +            V  + 
Sbjct: 201 LGKTISIVLDDQVISSPMVKNEIPNGKAQITGMASMEEAANLANLIQSGALPVPVEVIE 259


>gi|78222759|ref|YP_384506.1| heavy metal efflux pump CzcA [Geobacter metallireducens GS-15]
 gi|78194014|gb|ABB31781.1| Heavy metal efflux pump CzcA [Geobacter metallireducens GS-15]
          Length = 1045

 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 83/681 (12%), Positives = 188/681 (27%), Gaps = 46/681 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +++++++I   G+         ++ +D  P       I                 
Sbjct: 11  RNRIIIIMIFALIVAAGVWAV-----YRTPVDAIPDLSDNQVI---------VFTEYPGR 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          L +      S     + I + F D         +V   L  
Sbjct: 57  SPQVVEDQVTYPLAVNLQGLPQVRAVRASSAFGFSMIYVIFEDKADIYWARTRVLERLNY 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  + +  L    T        +       +          +R    Q+       
Sbjct: 117 AASLLPPNVRPTLGPDGTGVGHVFWYTLEGKGYDLEQLRTLQDWFVRY---QLNTVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + +   + DP+RL        ++       NN   G +            + 
Sbjct: 174 EVASIGGYVREYQIDLDPNRLFAYNVKVDQVMEAVKRSNNDVGGRLMEQADAEYLIRGKG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   ++  I +                       G   + +                 
Sbjct: 234 YIKSPKDLEDIVVGADM------------------RGTPVYVKNLGTVQLGGAIRRGLLD 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I   +   +    I+        L  G  P    +V        + +   
Sbjct: 276 MNGEGEAVGGIVVMRYGENAKDVIDRVKEKIKSLEQGLPPGVKIMVSYDRSDLIMRAIDT 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K +    + +V +V+   +L+ +  LV   ++ + V+++   + L+G T  + S+ GI 
Sbjct: 336 LKHSLLEESVVVSLVILAFLLHFQSSLVIVLTLPIAVLISFITMKLMGVTSNIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + IG+ VD+ +++ E             + +     +     +    IF S    +++ V
Sbjct: 396 IAIGVLVDAGVIMVENCYRHLSELPPEERKEKRLEVIITSAKQVGRAIFFSLAIIVLSFV 455

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   S++ S F AI++V  +M F +R K            F 
Sbjct: 456 PVFLLEGQEGKMFHPLAFTKTFSMVGSAFIAITLVPVLMFFFMRGKMPPESSNPVSMFFI 515

Query: 533 LIPDC--IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            +       +   +     + +  L     + +         +D    + + V       
Sbjct: 516 RLYSPVIRWVLKWKKTTIALNLVALAIAIPMFMTLGSEFMPPLDEGSLLYMPVTLPNISI 575

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               R       +     +                   V+    + ++K K      ++ 
Sbjct: 576 TEAKRLIQVQDTVIKSVPEVEHVLGKVGRAETSTDPAPVSMFESIIILKPKEKWRAGVTK 635

Query: 651 IQNTEIVGPKISRELIRKGIV 671
                 +  K+ +  +R G  
Sbjct: 636 ADIVSELDAKLQQIGVRNGWT 656



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 60/161 (37%), Gaps = 6/161 (3%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S +  L+ +     +  +L  + TL + +  +     L G+  N+ ++  +   IG  V+
Sbjct: 344 SVVVSLVILAFLLHFQSSLVIVLTLPIAVLISFITMKLMGVTSNIMSLGGIAIAIGVLVD 403

Query: 736 DKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             V++ +   R    +          ++I  S  +      ++     +S +P+ +  G 
Sbjct: 404 AGVIMVENCYRHLSELPPEERKEKRLEVIITSAKQVGRAIFFSLAIIVLSFVPVFLLEGQ 463

Query: 793 ---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +    A    F +V +A  +I +   ++ F    +   
Sbjct: 464 EGKMFHPLAFTKTFSMVGSAFIAITLVPVLMFFFMRGKMPP 504



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 72/191 (37%), Gaps = 11/191 (5%)

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAITTLILDITKTLGFFA 712
                  +   ++  K  + +++ A  ++I+I + F ++ AL  ++  L +      G + 
Sbjct: 848  YVAWSGQWENQVRAKQRLQILVPAGMLIIFILLYFTFHSALEASMVMLSVPFALVGGVYL 907

Query: 713  L--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-----TSISFRDLIDKSI 765
            +   G   ++      + L G +V   VV+   + + +         T     D   +  
Sbjct: 908  VKALGYNMSVAVWVGFIALYGIAVETGVVMVIYLHEALDKKLINGPCTEQDIYDATFEGA 967

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T   A I ++P+      G  V+   A PM  G++ +A   + +   I + 
Sbjct: 968  VLRLRPKLMTVAVALIGLIPIMWSSGTGADVMKPIAAPMIGGMISSAIHVLIMTPVIFVL 1027

Query: 823  IYDWRAKNARI 833
            +     K  ++
Sbjct: 1028 MKKHDLKKGKL 1038


>gi|262038169|ref|ZP_06011566.1| protein-export membrane protein SecD [Leptotrichia goodfellowii
           F0264]
 gi|261747817|gb|EEY35259.1| protein-export membrane protein SecD [Leptotrichia goodfellowii
           F0264]
          Length = 400

 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 131/381 (34%), Positives = 212/381 (55%), Gaps = 23/381 (6%)

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +      ++ +  +++  +I+ +RID +G+SE  +Q  G  R++++L G +DP +   L+
Sbjct: 39  VVLQAQGKIENDTMDKVRDIVERRIDSLGVSEPVLQINGKDRLIVELAGIKDPQKAIDLI 98

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
           GTTAK+ F     + +    +     ++++   Q                          
Sbjct: 99  GTTAKLEFKIKNQDGTYGPTLLEGSAIKNATLVQGQFG---------------------- 136

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           +P V    D  GA  F ++TR+N+ K LA++LDG+  +APVIN  IP G+  I+ N   E
Sbjct: 137 QPEVAFELDTKGAETFAKITRENVHKQLAIMLDGKEQSAPVINTEIPGGRGVITTND-PE 195

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  L  +L++G+LP+ + I+E R VGA LG++SI +   A V  ++ I LFM  +Y   
Sbjct: 196 DAQALTNLLKSGALPVSIKIMETRTVGATLGNESIQQTKMAGVIAMIAISLFMFAVYKIP 255

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           GL+AD  + +   L LA  S++GATLTLP IAG +L +G+ VD+N++  ERI+EE RK  
Sbjct: 256 GLIADIVLAIYGFLVLASFSMIGATLTLPGIAGFILTLGMVVDANVITFERIKEELRKGY 315

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           S+  +++ GF      I D NIT L+   VLFFFG G V+GFA+T+ L +LI++ TA+ I
Sbjct: 316 SLEDAVENGFKNGLPAILDGNITTLLVASVLFFFGTGPVKGFAVTLTLGVLITIVTALFI 375

Query: 507 VRAMMIFIIRYKKMKSIDINP 527
            + +   +I   K+K   +  
Sbjct: 376 TKVLFKLVISVFKVKKEQLFW 396



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 86/228 (37%), Gaps = 6/228 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +    V   L  +  G          +    R      D      +  ++K     +   
Sbjct: 155 ITRENVHKQLAIMLDGKEQSAPVINTEIPGGRGVITTNDPEDAQALTNLLKSGALPVSIK 214

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                   VG  +  E I++  +  +I+ IA+ ++++  +K    L A   L +     L
Sbjct: 215 IMETR--TVGATLGNESIQQTKMAGVIAMIAISLFMFAVYKIP-GLIADIVLAIYGFLVL 271

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
             F++ G    L  +A  +  +G  V+  V+ ++R+++ ++      S  D ++      
Sbjct: 272 ASFSMIGATLTLPGIAGFILTLGMVVDANVITFERIKEELR---KGYSLEDAVENGFKNG 328

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           L   +  ++   +    +  +G   +  FA+ +  G+++   +++FI 
Sbjct: 329 LPAILDGNITTLLVASVLFFFGTGPVKGFAVTLTLGVLITIVTALFIT 376



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/376 (11%), Positives = 108/376 (28%), Gaps = 22/376 (5%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
            + +N+I LGLDLRGG+++VL+       N  +    D +   +   G+    ++    +
Sbjct: 21  ILYRNKIKLGLDLRGGTYVVLQAQGK-IENDTMDKVRDIVERRIDSLGVSEPVLQINGKD 79

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           ++ +  A  +  +   D +                  L      ++ +   +      + 
Sbjct: 80  RLIVELAGIKDPQKAIDLI-------------GTTAKLEFKIKNQDGTYGPTLLEGSAIK 126

Query: 157 SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI-QLPGEQDPSRLRQLLGTTAKMSFH 215
           +  + Q      +   ++    +      +   +  QL    D       +  T      
Sbjct: 127 NATLVQGQFGQPEVAFELDTKGAETFAKITRENVHKQLAIMLDGKEQSAPVINTEIPGGR 186

Query: 216 KVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFD 275
            V+  N  +        L+       +   +    G  L   +           +     
Sbjct: 187 GVITTNDPEDAQALTNLLKSGALPVSIKIMETRTVGATLGNESIQQTKMAGVIAMIAISL 246

Query: 276 EMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
            M A         +I   +   L     +       +P     I     +  A ++    
Sbjct: 247 FMFAVYKIPGLIADIVLAIYGFLVLASFSMIGATLTLPGIAGFILTLGMVVDANVITFER 306

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
               L    ++ +      + G  +            +L+   +       G V  F++ 
Sbjct: 307 IKEELRKGYSLED----AVENGFKNGLPAILDGNITTLLVASVLFFFG--TGPVKGFAVT 360

Query: 396 LNVILTLALLSLLGAT 411
           L + + + +++ L  T
Sbjct: 361 LTLGVLITIVTALFIT 376


>gi|255262341|ref|ZP_05341683.1| acriflavin resistance protein [Thalassiobium sp. R2A62]
 gi|255104676|gb|EET47350.1| acriflavin resistance protein [Thalassiobium sp. R2A62]
          Length = 1041

 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 69/554 (12%), Positives = 152/554 (27%), Gaps = 40/554 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   V++ +++  + +     + + +      P  +P   +S GLD          +   
Sbjct: 10  SRSRVVVMALLLILSVGAYAYSAISKEANPEIP--LPLFYVSSGLD---------GISPS 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D     L+    E    +           +    I L FA     +   DKV        
Sbjct: 59  DAERLLLEPMESE-FGSIAGLISMNSDATEGFASIQLEFAPGGDNQEALDKVREAANRAQ 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L  D +   +         I+ +  +         + + E      ++I      ++ 
Sbjct: 118 GDLPEDARDITITEINTALFPIITAILSGPMPERTLNDLANE----MQEEIEGLSGVLEV 173

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
               +    L    DP+       +  ++                          N  L+
Sbjct: 174 DIGGQRFEFLEVLIDPTVFETYNLSFDELIGQL--------------------QRNNRLI 213

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                 +G+           +  + V+ +     G           I +          +
Sbjct: 214 AAGAIETGVGRIVLKVPGLIEDLEDVMSMPVKVRGDAVVTFGDVATIRRTFEDPTSFARI 273

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                     + ++  +   T+     L   L             +          S  +
Sbjct: 274 NGQPALALEVTKRSGANIIDTVNEVKALVDALSVDWPDNVEVTYLQDQSVQVKDWLSDLE 333

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   LV+IV+   +      L+   SI    +  +  L  +  ++ +  +  ++L 
Sbjct: 334 ANVIAAVILVMIVVVFALGTR-SALLVGLSIPGAFLAGVVALWAMSFSMNIIVLFALILV 392

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+ VD  I+  E    + ++      +      R    I  S  T L     L F+ G 
Sbjct: 393 VGMLVDGAIVTTELADRKLQEGLPAKQAYSEAAKRMAWPIIASTATTLSVFFPLLFWTGM 452

Query: 484 ---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
               ++   IT+ L++  S+F A+  +  M   I +     +     L    L       
Sbjct: 453 VGEFMKSLPITVILTLSASLFMALIFIPVMGGLIGKRPPQSANAKAALYAAELGDPREMG 512

Query: 541 QFMRARFWGVGISI 554
            F       +  +I
Sbjct: 513 GFTGGYVRLLEWAI 526



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 82/234 (35%), Gaps = 20/234 (8%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  +  ++      +     +  +   +        ++ +     +   E +   I   
Sbjct: 802  DEKRVATIEANVAPGILVNDQVIALNAALNATDLPDGVEFSFAGEAEDQAESMIFLIGAF 861

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIG 731
              +   M + + ++F  +Y A   ++ +I  I   L    + G  F +      V+ L G
Sbjct: 862  ATAIFLMFVILVLQFNNFYQAFVVMSAIIFSIAGVLLGLIVTGRPFGIVMGGIGVIALAG 921

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VN+ +V+ D       L     S  +   ++  + L   + TS+   + ++PM +   
Sbjct: 922  IVVNNNIVLIDTYND---LKRAGQSPLEAALRTGAQRLRPVILTSVTTALGLMPMVIGVN 978

Query: 789  ---------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                     +G          +  +A G+V+A   ++ +   +L+      ++ 
Sbjct: 979  LNFFTREVVYGAPSTQWWTELSSAIAGGLVIATILTLVVTPAMLMLGEKRASRR 1032



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/429 (10%), Positives = 130/429 (30%), Gaps = 19/429 (4%)

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD-------- 465
           + S  G + G+             I+ E         +LD     A     D        
Sbjct: 68  MESEFGSIAGLISMNSDATEGFASIQLEFAPGGDNQEALDKVREAANRAQGDLPEDARDI 127

Query: 466 -SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                      ++     G +    +    + +      +S V  + I   R++ ++ + 
Sbjct: 128 TITEINTALFPIITAILSGPMPERTLNDLANEMQEEIEGLSGVLEVDIGGQRFEFLEVLI 187

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
              +   + +     I  ++     +    + +     +L   GL   ++    + + V 
Sbjct: 188 DPTVFETYNLSFDELIGQLQRNNRLIAAGAIETGVGRIVLKVPGLIEDLEDVMSMPVKVR 247

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +  V    V +   + +      +        L   +    + +     ++ +   ++ 
Sbjct: 248 GDAVVTFGDVATIRRTFEDPTSFARINGQPALALEVTKRSGANIIDTVNEVKALVDALSV 307

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             P +             ++ +      VI + I ++I +        AL    ++    
Sbjct: 308 DWPDNVEVTYLQDQSVQVKDWLSDLEANVIAAVILVMIVVVFALGTRSALLVGLSIPGAF 367

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV---VYDRMRKNMKLYTTSISFRDLI 761
              +          N+  + A++ ++G  V+  +V   + DR           +  +   
Sbjct: 368 LAGVVALWAMSFSMNIIVLFALILVVGMLVDGAIVTTELADR------KLQEGLPAKQAY 421

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            ++        +  S A  +SV    ++   ++G F   +   +++  S+S+F+A   + 
Sbjct: 422 SEAAKRMAWPII-ASTATTLSVFFPLLFWTGMVGEFMKSLPITVILTLSASLFMALIFIP 480

Query: 822 FIYDWRAKN 830
            +     K 
Sbjct: 481 VMGGLIGKR 489


>gi|83860057|ref|ZP_00953577.1| RND family efflux transporter [Oceanicaulis alexandrii HTCC2633]
 gi|83852416|gb|EAP90270.1| RND family efflux transporter [Oceanicaulis alexandrii HTCC2633]
          Length = 1039

 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 77/620 (12%), Positives = 166/620 (26%), Gaps = 30/620 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              VL     + V+  +    +   + +        S  +   +I + F      +N A 
Sbjct: 52  VRAVLPGAAPETVDAEVTSVLEGAAARVSGVREIRSSSEENSARIRVEFNPGVDLDNAAS 111

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +   +  V+ +L    ++  +V   +   +IV      D  +    E +  I    + +
Sbjct: 112 DLREAVSQVSRRLPDRVEQVSVVKADDDAEAIVSLAVVSD--VYDQQELTRRIENDIVPE 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +       S     QL    DP RL +   T   ++              F     
Sbjct: 170 LTAIDGVATVNLSGERAQQLRVVIDPIRLSRFGLTVGDVADALRQAPFDVPVGSFRSTDQ 229

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           +     +        +  + +   T                                   
Sbjct: 230 QLIVRAEATAATPERVKAVIIQDQT------------------------RVGDVAEAFFA 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A       L    +       +A+ +     +      A L           V      
Sbjct: 266 PADATSFTRLDGREVIGIGVIRQARSNTINISDAVQERVAQLNERFE-DLEITVTSDEAE 324

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S      T  +   +V+ V+++ +   +  L+   +I   +I  +A L L G ++ 
Sbjct: 325 FIRESVQEVLLTLTVTVLIVVGVIWLFLGKFRATLIPSAAIPAALIGAVAGLWLFGFSIN 384

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + ++  +VL  GL VD  I+V E I     K      +  +G  + +  +  +    +  
Sbjct: 385 ILTLLALVLATGLIVDDAIVVLENIHRLQSKGVGRRAAAVIGSRQVFFAVVATTAVLVAV 444

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            V + F     G   R F   + L+++IS F A+++V A    +       +      + 
Sbjct: 445 FVPISFLPSTAGRLFREFGFLLALAVVISSFVALTVVPAFAARLDLTSGDDAKGPIQRTG 504

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L     A+         V   I        +     L+  +  +    +  +     D
Sbjct: 505 GVLARSYAALIRQALNHPWVTAGICVLAAGGAVFAGMALDRELTPEEDRGVVYVWAGGPD 564

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              +          +   Q +         L         +  +   +          S 
Sbjct: 565 GVGLEYMDRQADRIEAILQPYIDRGEIESLLTVVGRWDPNRIFITAPLAPYTERDRTQSQ 624

Query: 651 IQNTEIVGPKISRELIRKGI 670
           I             +     
Sbjct: 625 IAAEISASLSDIPGVRASAF 644



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 54/151 (35%), Gaps = 6/151 (3%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
               K+   L     +   +   +    LFG   N+  + A++   G  V+D +VV + +
Sbjct: 350 LFLGKFRATLIPSAAIPAALIGAVAGLWLFGFSINILTLLALVLATGLIVDDAIVVLENI 409

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +L +  +  R        +     V T+       +P++      G +   F   +
Sbjct: 410 H---RLQSKGVGRRAAAVIGSRQVFFAVVATTAVLVAVFVPISFLPSTAGRLFREFGFLL 466

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           A  +V+++  ++ +       +      +A+
Sbjct: 467 ALAVVISSFVALTVVPAFAARLDLTSGDDAK 497



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 92/241 (38%), Gaps = 10/241 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L ++    ++ +    E+   + L+    D        + +++   + +P       E
Sbjct: 779  SALTTIIEQGVAAELDRTEQRRAIELEADILDGFTIAEAADEMRRLAADTLPDDIELLFE 838

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                 +  +  R  I+  + + + + + +  +F+       +  L +        +ALF 
Sbjct: 839  GEAETL-NQATRDLILTYVFALVIVFLVLAAQFESLTG-PLVVMLTVPFALAAAVYALFL 896

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   N+ +   ++ LIG    + ++V +      +L     S R+ I+++    L    
Sbjct: 897  TGTSLNIFSQIGLVMLIGLMAKNGILVVEFA---DQLRAEGKSVREAIEEAAIIRLRPIA 953

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T ++  +  LP+ +    G     S    +  G+ ++A+ ++F+   + L +  +    
Sbjct: 954  MTLISTVLGALPLILATGAGAQARISIGWTVFGGLGLSAAFTLFLTPVVYLGLARFGTPR 1013

Query: 831  A 831
            A
Sbjct: 1014 A 1014


>gi|260462187|ref|ZP_05810431.1| acriflavin resistance protein [Mesorhizobium opportunistum WSM2075]
 gi|259032047|gb|EEW33314.1| acriflavin resistance protein [Mesorhizobium opportunistum WSM2075]
          Length = 1053

 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 68/597 (11%), Positives = 164/597 (27%), Gaps = 41/597 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++   +   GL            +   PSA                   L   
Sbjct: 8   RRPVATLLMSFALVLGGLFA-----YKFLPVAALPSAEFPVV---------NVSASLPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +     +  + +        +    Q  I + F  +R  +  A  V   +  
Sbjct: 54  SPETMATSVATPLIKQFATIAGIDSISTTNSLGQTSIAIQFVLNRDIDAAAADVQAAIAR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L                 + +L   ++        +            +   +   
Sbjct: 114 TQKSLPPQMTSPPSYRKVNPADAPILL-MSLVSDTVPLTDLDAFAENVISPSLSTIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  + DP+ L     +  ++       N++                   
Sbjct: 173 QVSIFGQQKYAVRIQIDPTALAARGISIDQLQAAVASANSNTPLG--------------- 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V  +       TAN          ++                 +   +       
Sbjct: 218 -----VLQNNKQQLTITANTQLTDAAGFSNLIIATKNGHPVRLGEVTRVVNSVQTTTTAS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++    +    +          +      +   +   
Sbjct: 273 WYDGTRAIIMAVQRQPDANTVDVVDKVKAMLPSFQDQMPAAAQIKLLNDRSTSIRQAVDD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ +++I TL  + L G ++   S+ G+ 
Sbjct: 333 VQFTLLLTIALVVMVIFVFLRRVTATIIPAVAVPISLIATLGAMFLFGFSIDNISLMGLT 392

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L +GL VD  I++ E I         S F +   G      TI   +I+ +   + +   
Sbjct: 393 LAVGLVVDDAIVMLENIFRHMEEDGLSAFDASLKGAREIGFTIISISISLVAVFIPVLLM 452

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
           GG   R    FA+ + ++IL SMF ++++   +   +  +     ++        F    
Sbjct: 453 GGVIGRIFNEFAVVVTVAILASMFVSLTLTPMLCSRLLSVTKADREAHGAGHKRDFITRG 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               + F     + V +  + +  +   L           +   Q+ V      D+S
Sbjct: 513 YDRVLSFCLRHTFLVFLVFIGTAAASVWLIQVSPKGFFPQEDIGQISVTTIARQDIS 569



 Score = 82.8 bits (202), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 81/214 (37%), Gaps = 11/214 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-----K 668
           +    + +  Q         V++ VK  +              +    S  + +     +
Sbjct: 275 DGTRAIIMAVQRQPDANTVDVVDKVKAMLPSFQDQMPAAAQIKLLNDRSTSIRQAVDDVQ 334

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             + + I+ + M+I++++R +    +     + + +  TLG   LFG   +  ++  +  
Sbjct: 335 FTLLLTIALVVMVIFVFLR-RVTATIIPAVAVPISLIATLGAMFLFGFSIDNISLMGLTL 393

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  V+D +V+ + +     +    +S  D   K   E     +  S++     +P+ +
Sbjct: 394 AVGLVVDDAIVMLENIF--RHMEEDGLSAFDASLKGAREIGFTIISISISLVAVFIPVLL 451

Query: 789 WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
            GG +      FA+ +   I+ +   S+ +   +
Sbjct: 452 MGGVIGRIFNEFAVVVTVAILASMFVSLTLTPML 485



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 75/172 (43%), Gaps = 8/172 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF 718
                 L  +G++ +  + + + I + I ++ +   L  +T L   +   +      G++ 
Sbjct: 844  TFQDSLANQGLL-IGGAILTIYIVLGILYESFIHPLTILTGLPSAVLGAVVALRFAGMDL 902

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++ AV  +L LIG    + +++ D   +  +     +S  D I K+        + T++A
Sbjct: 903  SVIAVIGILMLIGIVKKNGIMMVDVALELRRE---GMSATDSIHKACLMRFRPIMMTTLA 959

Query: 779  AFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            A +   P+A+       +     + +  G++ + + ++F+   I +++ ++ 
Sbjct: 960  ALMGTFPIALGTGASAELRQPLGVAVVGGLLASQALTLFVTPVIYVYMENFS 1011


>gi|193212585|ref|YP_001998538.1| acriflavin resistance protein [Chlorobaculum parvum NCIB 8327]
 gi|193086062|gb|ACF11338.1| acriflavin resistance protein [Chlorobaculum parvum NCIB 8327]
          Length = 1039

 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 66/553 (11%), Positives = 154/553 (27%), Gaps = 40/553 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + +L+S+I  +G          Q   +  P                    +    
Sbjct: 11  RRPTLVAVLFSVIAILGFFS-----YRQLQYELLPRMSTPYVT---------VTTIYAGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   + M  +E  S ++K      S  +  + +T+ F      +     V   +  
Sbjct: 57  SPDEIETSITMKVEEAVSSIEKISSINSSSSEGLSLVTIEFDSDADIDLALQDVQRKVNE 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    K+ ++      E+ ++      +       +    +       +       
Sbjct: 117 TRDDLPDGAKEPVVSRFAIDEMPVLRIGATSN---LSDTDFYQFLKDDVKPALSNISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D  RL  L  T   +       N             +       
Sbjct: 174 QVAIQGGREREIRVNIDLDRLESLGMTVGDLLDAVRKANLDFPAGSVEAPDRKYVVR--- 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A       +    +  D   A +        +      +    
Sbjct: 231 ----------------MAGKFTSLDQMRNLVVRDGGSAGQVRLRDVAEVQDTYRDIKTLT 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE-ERNVGADLGSDS 360
            +        +   +   +       A    A L        L+ V  +      + + +
Sbjct: 275 RINGRNAVGILVVKQTDANTVEVCRLAREKLAELEQRYAGKGLHFVIGQDASTFTVDAVN 334

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   LV +V+ + +   +  L+   SI  +++ T   + L   +L L ++  +
Sbjct: 335 AVQHDLLLAILLVAVVMLLFLHSLRNSLIVMVSIPTSLVSTFIGMYLFDFSLNLMTLLSL 394

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSL---DMGFSRAYSTIFDSNITALIATVVL 477
            L IG+ VD +I+V E I     + ++   +              I   ++   +   +L
Sbjct: 395 SLVIGILVDDSIVVLENIYRHLEQGEAPREAALVGRNEIGFTAVAITLVDVVVFLPLSLL 454

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G  +R FA+ M +S L+S+F + ++   +     + +++    +            
Sbjct: 455 SGLVGDILREFAVVMVISTLVSLFVSFTVTPLLASRFSKVEQLSESSLGGRIALGFERWY 514

Query: 538 IAIQFMRARFWGV 550
              +    R  G 
Sbjct: 515 ERGRDWYLRLLGW 527



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 87/237 (36%), Gaps = 13/237 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + LE  +   +  ++   E  ++               +  ++     + +  +++    
Sbjct: 795  ARLEQSRGYALLQRHNRNESVWVKAQVVGRPVGAIGQEIERVITNMKQQGIMPASVTREY 854

Query: 656  IVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                K   E     +   I++ + + LI + +   W +    + ++ L I   L   AL 
Sbjct: 855  QADLKRQGESNVSLLYAFIVAILFVYLIMVALYDSWLWPGVVMFSIPLAIIGALWALALL 914

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGR 771
            G   ++  +  ++ L+G    + +++ D   + R+        +     I ++  E L  
Sbjct: 915  GKSLSIFTILGIIMLVGLVGKNAILLVDFINKFREE------GLELIPAITEAGRERLRP 968

Query: 772  SVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             + T++     ++P+A+ G S        A+ +  G+  +   ++ +   + ++   
Sbjct: 969  ILMTTLTLIFGLMPIALSGSSGSEWKSGLAVALVGGLSSSMFLTLLVIPVVYVWFDR 1025



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 84/283 (29%), Gaps = 12/283 (4%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R   +                              L V          +R   E      
Sbjct: 209 RKANLDFPAGSVEAPDRKYVVRMAGKFTSLDQMRNLVVRDGGSAGQVRLRDVAEVQDTYR 268

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                        V +            V  + ++K+ E+      +    V  + +   
Sbjct: 269 DIKTLTRINGRNAVGILVVKQTDANTVEVCRLAREKLAELEQRYAGKGLHFVIGQDASTF 328

Query: 666 IRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
               +  V     +   +  ++ +        +L  + ++   +  T     LF    NL
Sbjct: 329 TVDAVNAVQHDLLLAILLVAVVMLLFLHSLRNSLIVMVSIPTSLVSTFIGMYLFDFSLNL 388

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             + ++  +IG  V+D +VV + +    +      + R+      NE    +V  ++   
Sbjct: 389 MTLLSLSLVIGILVDDSIVVLENI---YRHLEQGEAPREAALVGRNEIGFTAVAITLVDV 445

Query: 781 ISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           +  LP+++     G ++  FA+ M    +V+   S F   P+L
Sbjct: 446 VVFLPLSLLSGLVGDILREFAVVMVISTLVSLFVS-FTVTPLL 487


>gi|220915369|ref|YP_002490673.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953223|gb|ACL63607.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1054

 Score =  134 bits (335), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 64/558 (11%), Positives = 153/558 (27%), Gaps = 42/558 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +   +   GLL  +         D FP   P               +V    
Sbjct: 9   KRPIVTITVMLALVIFGLLALV-----TLKTDEFPDVQPPVV---------AVTIVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKE--GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             + V   +    ++    +          S      +  + F   +        +   +
Sbjct: 55  SPETVEREVIDPIEDAIFSISGIDGKQTTASATDGLAQFIVFFDFEKNLMEATQDIRDAI 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  + ++ +LV     +  IV        +   A   +          +   + 
Sbjct: 115 SSKRQDLPTEMEEPVLVRFDPSQEPIVTLTLTSKTLPVPA--LTRLADEVVSRDLRSVQG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       +L  + DP  +     + A++       N +             S   
Sbjct: 173 VADVRLVGGQKRELTVQLDPEAMAAASVSAAEVVGALQAQNLAAPVGRVNTPLGEQSIRL 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +    E                       ++    G +         +         
Sbjct: 233 SGRLGTPEEFE--------------------QVAVASRGGQVVRLGQVATVLDGAEEART 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +  +          K +      +  A    A      +      + + +      S 
Sbjct: 273 LALFNSGEAVGLEV-LKTKGYSTTAVADAVKQRARALEPRMEGAKLAIVQDSGTRVRQSV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              + T    A L ++V+F+ +   +  ++   ++ ++V+     +   G TL   S+ G
Sbjct: 332 DDVQRTLVEGALLTVLVVFLFLNSWRSTVITGLALPVSVLAAFVSVWAFGFTLNTMSLLG 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVV 476
           + L IG+ +D  I+V E I       +    +   G      A +    S +   +    
Sbjct: 392 LSLAIGILIDDAIVVRENIVRHIELGEDHTTASHKGTDEIGLAVTATTFSIVAVFVPVAF 451

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           ++   G   + FA+T+  ++L+S+F + S+   M  +    +  K     P+ R     +
Sbjct: 452 MYGVAGQWFKPFALTIAAAVLVSLFVSFSLDPMMSAYWPDPQVEKGERRGPVGRALGAFN 511

Query: 537 CIAIQFMRARFWGVGISI 554
               +   +    V  ++
Sbjct: 512 RWFDRQASSYRRVVAWAL 529



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 83/244 (34%), Gaps = 8/244 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + V L  V + L+  +          GE   L  L+ +   + A    ++   + + 
Sbjct: 250 RGGQVVRLGQVATVLDGAEEARTLALFNSGEAVGLEVLKTKGYSTTAVADAVKQRARALE 309

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
             +  + +   +  G ++ + +       V  + + +L+       W   +     L + 
Sbjct: 310 PRMEGAKLAIVQDSGTRVRQSVDDVQRTLVEGALLTVLVVFLFLNSWRSTVITGLALPVS 369

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLID 762
           +         FG   N  ++  +   IG  ++D +VV    R+N+ +             
Sbjct: 370 VLAAFVSVWAFGFTLNTMSLLGLSLAIGILIDDAIVV----RENIVRHIELGEDHTTASH 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K  +E       T+ +     +P+A      G     FA+ +A  ++V+   S  +   +
Sbjct: 426 KGTDEIGLAVTATTFSIVAVFVPVAFMYGVAGQWFKPFALTIAAAVLVSLFVSFSLDPMM 485

Query: 820 LLFI 823
             + 
Sbjct: 486 SAYW 489



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 84/224 (37%), Gaps = 6/224 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  +V +Q           V E+ ++   E+         +        E+  +  V +
Sbjct: 810  DRQRVVSVQGNVAGRSLSEVVNEIERRLAGEVKLPPGYTLRQGGESADQAEVFTRIGVAL 869

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + M + + ++F  +      + +L L +   +    + G   NL ++  V+ L G 
Sbjct: 870  LLAVMLMYLVLVLQFGSFLDPFAILLSLPLSLIGVVLALLVTGDTINLMSLIGVILLFGI 929

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPMAVW 789
               + +++ D  +         +S RD + ++    L   + TS+A     I V      
Sbjct: 930  VAKNAILLIDFAK--WAREERGLSIRDALVEAGGIRLRPIMMTSVAVIAGMIPVASGLGE 987

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG         +  G++ +   ++ +   +   +  WR +  R+
Sbjct: 988  GGDFRAPLGRAVIGGVITSTLLTLLVIPTVYEIMDGWRTRLGRL 1031


>gi|254975996|ref|ZP_05272468.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile QCD-66c26]
 gi|255093384|ref|ZP_05322862.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile CIP 107932]
 gi|255101564|ref|ZP_05330541.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile QCD-63q42]
 gi|255315129|ref|ZP_05356712.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile QCD-76w55]
 gi|255517800|ref|ZP_05385476.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile QCD-97b34]
 gi|255650914|ref|ZP_05397816.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile QCD-37x79]
 gi|260683985|ref|YP_003215270.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile CD196]
 gi|260687645|ref|YP_003218779.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile R20291]
 gi|306520798|ref|ZP_07407145.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile QCD-32g58]
 gi|260210148|emb|CBA64314.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile CD196]
 gi|260213662|emb|CBE05508.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile R20291]
          Length = 1044

 Score =  134 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/600 (12%), Positives = 173/600 (28%), Gaps = 44/600 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++++ ++   G +        +  ++  P       +                 
Sbjct: 9   KRPLTIIMVFLVLIVFGGI-----GYKKMSINLMPDIEIPVVM---------VMTTWTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V+  +    DE  S +      + S ++  + +   F      + I + V   +  
Sbjct: 55  GPQDVDEQVSQKVDESLSAVSNVKSTISSSQESVSMVVAQFEFGTNLDEIMNDVRSKVDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D  K  ++       +I     +     + +             +I   +   
Sbjct: 115 LQTSLPDDAAKPTVLKLDMNAQAIGQLVISGGN-ENSSQALRKYAEDVIQPKIESIDGVT 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+    DP+ L     + + +       N +                   
Sbjct: 174 SADLKGGEKAQVNVIADPAVLSNYGVSLSTIKGVLSSSNKTFPYGS-------------- 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G       A    ++   +  I     G          ++    A      
Sbjct: 220 ------ITQGEDKIVLRAIDKLESLDDIKQIQIPVKGGNTVRLDNLCSVDYGYADKDSIY 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S +   +    +++A      L   +       +          S + 
Sbjct: 274 RYNGKDSLVIDISKQQDANTVKVMQSAYKYVDELNKENPQF-KIKIANDTSSYISESINS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A +  IV+F  +   +  LV   +I +++I  +A+L   G +L L + + +V
Sbjct: 333 VMSNLLISAVIAFIVIFAFLKSVRASLVVAVAIPISIIGAIAILYFTGESLNLITASSLV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + +G+ VD+  +V E I +  +  + S+      G     + I  S +T +   + + F 
Sbjct: 393 ISVGMVVDNATVVIENIFKYRKSGRLSLDDCAIEGTRTVTNAILASTLTTIAIFLPIMFT 452

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G           T+  S+  S   AI++V ++   + R K  + +       F  + + 
Sbjct: 453 EGIAKITFGALGKTLIASLAFSFIGAITLVPSVFAKLSRGKNSQKMQEKDSPIFDKVSEA 512

Query: 538 IAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                       R   +   ++F      + F          KG + + +   + + L  
Sbjct: 513 YKKLLSVCLRHQRLVVISSLLIFVASLFGMGFIGMDFMPAADKGELSISIELPKGLSLES 572



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 90/253 (35%), Gaps = 8/253 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +  N      V       +++ D        + +F V +     +  A T     ++K 
Sbjct: 762  QLKVNSATGKEVPLGAFSDIKMADGLQSISRTDGDFSVNITATLDNLDAGTATKLALEKT 821

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
               ++P             ++  +   G   ++I+   + + +  +F+  F+   I    
Sbjct: 822  NKMVIPKDYSIGVGGETEMMNESMASLGF-SMVIAIALVYMVMVAQFE-SFSKPFIIMFC 879

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +         +L   G   +   +  ++ LIG  VN+ +V+ D + + ++    +     
Sbjct: 880  VPFAFVGVVLSLLVSGQSLSTVGMLGIILLIGIVVNNGIVLIDYI-EQLRKTNRNNDLIG 938

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
            L+       L   + T+    + +LP A+    GG  +   AI +  G+ V+   ++ + 
Sbjct: 939  LVSIGCAARLRPVLMTTATTILGMLPTALSLGEGGETMQPLAIVIMGGLTVSTLITLVLI 998

Query: 817  APILLFIYDWRAK 829
              I L    W  K
Sbjct: 999  PTIYLIFDKWENK 1011



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/261 (9%), Positives = 71/261 (27%), Gaps = 7/261 (2%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               Q+ +       + +           D         K+ LV    +  D+     + 
Sbjct: 239 DDIKQIQIPVKGGNTVRLDNLCSVDYGYADKDSIYRYNGKDSLVIDISKQQDANTVKVMQ 298

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF--KWYFA 693
              K            +                 ++  ++ +  +   +   F      +
Sbjct: 299 SAYKYVDELNKENPQFKIKIANDTSSYISESINSVMSNLLISAVIAFIVIFAFLKSVRAS 358

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + I   +      G   NL   ++++  +G  V++  VV + + K  K    
Sbjct: 359 LVVAVAIPISIIGAIAILYFTGESLNLITASSLVISVGMVVDNATVVIENIFKYRKSG-- 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI---PMAFGIVVAAS 810
            +S  D   +         + +++      LP+    G    +F      +   +  +  
Sbjct: 417 RLSLDDCAIEGTRTVTNAILASTLTTIAIFLPIMFTEGIAKITFGALGKTLIASLAFSFI 476

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            +I +   +   +   +    
Sbjct: 477 GAITLVPSVFAKLSRGKNSQK 497



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 49/525 (9%), Positives = 141/525 (26%), Gaps = 39/525 (7%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R+   +VI   +I    L       +                +  GL L          
Sbjct: 521  LRHQRLVVISSLLIFVASLFGMGFIGMDFMPAADKGELSISIELPKGLSL---------- 570

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            + +D+     +    ++                 +  I +     + ++   D++   + 
Sbjct: 571  ESNDYYVSMTEKKVSDIPEIKTLITTLTSDSNNSKASIAIELESQKNRKRTTDEIEKEII 630

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               + +          ++             +       ++   +   +    I    + 
Sbjct: 631  DRVATVPDCKINVSQNSSVMGGAGGADFTLEMKGPDLDVLKILGKEAEKEFSSIKGFRNV 690

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
               L       Q     D  + ++    TA+++       N        +   +     +
Sbjct: 691  ETSLTDTTQEAQFT--IDKHKAQEYGVNTAEIAGMLRTAINGDSVTTATIDDYKVDVNLK 748

Query: 241  YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +  +    +  I      +    +             G +       D            
Sbjct: 749  FKADTIDSLEDIKQLKVNSATGKEVPLGAFSDIKMADGLQSISRTDGD------------ 796

Query: 301  RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                         +  A +          +         +P   +I           S +
Sbjct: 797  ----------FSVNITATLDNLDAGTATKLALEKTNKMVIPKDYSIGVGGETEMMNESMA 846

Query: 361  IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                +  I   LV +V+           +  F +    +  +  L + G +L+   + GI
Sbjct: 847  SLGFSMVIAIALVYMVMVAQFESFSKPFIIMFCVPFAFVGVVLSLLVSGQSLSTVGMLGI 906

Query: 421  VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY--STIFDSNITALIATVVL- 477
            +L IG+ V++ I++ + I +  + N++      +    A     +  +  T ++  +   
Sbjct: 907  ILLIGIVVNNGIVLIDYIEQLRKTNRNNDLIGLVSIGCAARLRPVLMTTATTILGMLPTA 966

Query: 478  --FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
                 GG  ++  AI +   + +S    + ++  + +   +++  
Sbjct: 967  LSLGEGGETMQPLAIVIMGGLTVSTLITLVLIPTIYLIFDKWENK 1011


>gi|197336699|ref|YP_002158043.1| heavy metal efflux pump, CzcA family [Vibrio fischeri MJ11]
 gi|197313951|gb|ACH63400.1| heavy metal efflux pump, CzcA family [Vibrio fischeri MJ11]
          Length = 1039

 Score =  134 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 77/646 (11%), Positives = 170/646 (26%), Gaps = 39/646 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV++ +    +  + ++ N    + +D  P       I                  
Sbjct: 11  KNRFLVLVATFSLVVAGIYSVKN----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     E           ++   +   +
Sbjct: 118 APKLPAEAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   E DP +LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVEIDPDKLRAYNLTLQQVNKAIKEGNQETGASVIEVAEAEHMVRTSGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P         
Sbjct: 237 LSSVEDI------------------QSLPLKVTDKGTPLLLGDIADINLGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I         L+ G                   +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIANVKEKLVQLQKGLPDGVEIKATYDRSTLIDHAVKNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WEKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   K    N++ +  +          +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIEKTPLTNKNRWQVIGKAAEEVGPPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AI++V  +M + +R K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTFAMAASAGLAITLVPVLMGYFVRGKILPEHKNPINKTLVSLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    +R     + ++++    +   +   G  +      G  + +    P       
Sbjct: 519 RPLLTVSLRFPKTMLLVAMVLMGSAYYPISKMGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             L       I            +       D    T +  +++ K
Sbjct: 579 RELLQQTNKLIKTVPEVDTVWGKIGRAETATDPAPLTMIETVIQFK 624



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 83/236 (35%), Gaps = 5/236 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++    ++ + +P         
Sbjct: 266 NLGPQMRRGISEFNGEGEAVGGVIVMRFGENASEVIANVKEKLVQLQKGLPDGVEIKATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    ++     +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDHAVKNLWEKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVY 774
           I  N+ ++  +   IG  V+  +V+ + + K+++    T+ +   +I K+  E      +
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMIENVHKHIEKTPLTNKNRWQVIGKAAEEVGPPLFF 445

Query: 775 TSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + +   +S +P+    G     F   A    F +  +A  +I +   ++ +    +
Sbjct: 446 SLLIITLSFVPVFALEGQEGKMFSPLAFTKTFAMAASAGLAITLVPVLMGYFVRGK 501



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 72/261 (27%), Gaps = 20/261 (7%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   + L  V           I  +N        V +  +   S        +  +   
Sbjct: 784  SSGARIALGDVAEIRYEDGPPMIKTENARPNGWVFVDIDGRDLGSYVHEAQQAVHDQLNL 843

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                            +    L       V I+   +++ +++ F+  F    I    L 
Sbjct: 844  PAGYSLGWSGQYEYMERAKDRLTT----VVPITIGIIMLLLYLSFR-RFGEVLIIMGTLP 898

Query: 704  ITKTLG--FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--------- 752
            +    G     L    F++      + L G +V   V++   + +               
Sbjct: 899  LAMVGGLWLMHLLNFNFSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHEKQLTAQEQNNV 958

Query: 753  -TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
             T       I+      +   + T +   I ++P+      G  V+   A PM  G+  A
Sbjct: 959  LTQQDLTHAIEDGAGLRVRPVMMTVLTVIIGLIPIMYGSGTGSEVMQRIAAPMIGGMASA 1018

Query: 809  ASSSIFIAAPILLFIYDWRAK 829
               ++ +   +       + K
Sbjct: 1019 LLLTLLVLPAVFKLWKQSQCK 1039


>gi|148243254|ref|YP_001228411.1| RND family multidrug efflux protein [Synechococcus sp. RCC307]
 gi|147851564|emb|CAK29058.1| Multidrug efflux transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1)
           family (2.A.6.2.) , RND superfamily [Synechococcus sp.
           RCC307]
          Length = 1042

 Score =  134 bits (335), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/521 (11%), Positives = 135/521 (25%), Gaps = 25/521 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
                 L +++  + +L+A    L    ++  P   P                       
Sbjct: 6   PFLKRPLLTLVVSLLILLAGLLSLASLDVENLPPIAPSRV---------SVSANYPGASA 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    +   + L++      S       + LSF  +   E     V      ++
Sbjct: 57  EVVEQGVTNLMERQLNSLERLETITSSSSANGASVQLSFRGN-QGELDQINVQNEASLIS 115

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +L     +  L         +++   +           S  + RQ  + +         
Sbjct: 116 RQLPQPVSRQGLRVRRSSSDLLMVLSFSDSSNTYTRAFISSWVDRQVREPLLRINGVGDV 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
           +      +      D ++L +   T   +       N        G     +       +
Sbjct: 176 VLFGSSDLAYRLWLDATKLSRFELTIEDVKTALRRENVLAALGQVGDSPAPEGQQYTLPL 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             +  +                    + +     G     +                R L
Sbjct: 236 RMEGRLRNQQELEN------------LIVKPLGGGNSVRLQDLGTVRLGEERYGSIARNL 283

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       +   +      +   L         P                S +   
Sbjct: 284 DGQAAVAVGIFQRDGSNALAVSRSVEELLNQASLDFPPGLEVETIVDYASNVQESINQAI 343

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   LV  VL + +   +  L+   +I + ++ +  LL L G TL   ++ G+VL 
Sbjct: 344 AALRDAVLLVFAVLLLGLGNWRLALITAVAIPVALVGSFTLLKLSGGTLNAFTLFGLVLA 403

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG-- 481
            G+ VD  I+V+E I          F +           +  +++  ++  + +      
Sbjct: 404 TGVVVDDAIVVSEDIGRRISGGAKPFRAAREAMDELSGAVIATSLVLIVVFLPVLVMPGS 463

Query: 482 -GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            G   +  A+ +  +IL S   A+S        ++      
Sbjct: 464 LGRLYQPLAVVISSTILFSTINALSFTPVASAVLLGKSFRP 504



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL     + + +  +     L G   N   +  ++   G  V+D +VV + +    +
Sbjct: 364 WRLALITAVAIPVALVGSFTLLKLSGGTLNAFTLFGLVLATGVVVDDAIVVSEDI---GR 420

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIV 806
             +          ++++E  G  + TS+   +  LP+ V  GS+       A+ ++  I+
Sbjct: 421 RISGGAKPFRAAREAMDELSGAVIATSLVLIVVFLPVLVMPGSLGRLYQPLAVVISSTIL 480

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
            +  +++         +     + A
Sbjct: 481 FSTINALSFTPVASAVLLGKSFRPA 505


>gi|309388956|gb|ADO76836.1| protein-export membrane protein SecD [Halanaerobium praevalens DSM
           2228]
          Length = 402

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 106/287 (36%), Gaps = 7/287 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           R        S    + +   +     ++    +  I   +  +     + +  N    +I
Sbjct: 107 RTAMLTFQNSAGEVLMTGEAVKDARADHDQYGRPVIAFTLTNDGSAKFADITRNYMGKRI 166

Query: 604 GDISFQNFDGEKNFLVRLQYQ---PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                            ++ +    G +  +    + +  +   +     +  T  VGP 
Sbjct: 167 AIKLDHEILTNPTVQAVIEKKGQITGYNSIEAAEEDAILIREGALPVPVEVIETRTVGPT 226

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +    I+K I   +I  + + IY+ I +++   L A+  L +     +G  +       L
Sbjct: 227 LGAISIQKSIKAGLIGLLLVAIYMVIYYRFPGVLAAVI-LAIYGLLLMGTMSGLQATLTL 285

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +A ++  IG +V+  +++++R++  +K   +  + R  ID          V  ++   
Sbjct: 286 PGIAGLILSIGMAVDANIIIFERIKDELK---SGKTLRAAIDAGFKRAYTTIVDANVTTV 342

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           ++ L +A +    +  FA+ +  GI+V+  ++ F+   ++      +
Sbjct: 343 MTALILAYFTSGTVRGFAVTLGIGIIVSMFTAFFVTRNVIDIFAGSK 389



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 213/385 (55%), Gaps = 28/385 (7%)

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                I +        ++    +     +I +R++Q+G+SE  IQR GS RI+++LP   
Sbjct: 37  QGGAHIVLQAQPTEDREIDDTVMTGIKSVIERRVNQLGLSEPLIQREGSDRIIVELPAVD 96

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
            P+     +G TA ++F                               +V ++G  +  A
Sbjct: 97  SPNEAINTIGRTAMLTFQ--------------------------NSAGEVLMTGEAVKDA 130

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
            A+   +  +PV+  +    G+ +F ++TR+ +GK +A+ LD  +LT P +       K 
Sbjct: 131 RAD-HDQYGRPVIAFTLTNDGSAKFADITRNYMGKRIAIKLDHEILTNPTVQAV-IEKKG 188

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G  +IE A   A ++R G+LP+ + ++E R VG  LG+ SI K   A + GL+L+ +
Sbjct: 189 QITGYNSIEAAEEDAILIREGALPVPVEVIETRTVGPTLGAISIQKSIKAGLIGLLLVAI 248

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           +M++ Y   G++A   + +  +L +  +S L ATLTLP IAG++L IG+AVD+NI++ ER
Sbjct: 249 YMVIYYRFPGVLAAVILAIYGLLLMGTMSGLQATLTLPGIAGLILSIGMAVDANIIIFER 308

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           I++E +  +++  ++D GF RAY+TI D+N+T ++  ++L +F  G VRGFA+T+G+ I+
Sbjct: 309 IKDELKSGKTLRAAIDAGFKRAYTTIVDANVTTVMTALILAYFTSGTVRGFAVTLGIGII 368

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKS 522
           +SMFTA  + R ++      K ++ 
Sbjct: 369 VSMFTAFFVTRNVIDIFAGSKLLRE 393



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 4/104 (3%)

Query: 44  ISLGLDLRGGSHLVLEVDED---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKIT 99
           I+LGLDL+GG+H+VL+       +  +  +      +   + + G+    +++   ++I 
Sbjct: 30  INLGLDLQGGAHIVLQAQPTEDREIDDTVMTGIKSVIERRVNQLGLSEPLIQREGSDRII 89

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           +            + +             +           +  
Sbjct: 90  VELPAVDSPNEAINTIGRTAMLTFQNSAGEVLMTGEAVKDARAD 133


>gi|224534225|ref|ZP_03674803.1| acriflavine resistance protein [Borrelia spielmanii A14S]
 gi|224514327|gb|EEF84643.1| acriflavine resistance protein [Borrelia spielmanii A14S]
          Length = 1070

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 88/596 (14%), Positives = 188/596 (31%), Gaps = 33/596 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++IL+S++  I L         +  +D  P              +           
Sbjct: 9   KPITMLILFSLLMMISLYT-----FSRLKVDLLPGIDIP---------QISISTFYSGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   S +K          +  + ++L F      + + +++   L+ V
Sbjct: 55  PREVEESVSRVLESGLSSVKNLKNIYSVSSKENSIVSLEFYHGTDLDLVLNEIRDVLELV 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L    +   +     K I ++    N  + +S     + EII      +   +    
Sbjct: 115 KSSLPSKSQTPRIFRYNLKNIPVMEIVINSVRPVSELKRYADEII---KPGLERLDGVAI 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E   +RL     + +++S      N                +  +  
Sbjct: 172 VTVNGGSKKRVLIEVSQNRLESYGLSLSRVSSIIASQNLELSAG----------NILENN 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E  V++SG   +          +K     S   +           NI      + +   
Sbjct: 222 LEYLVQVSGKFKSIEEIGNVVIAYKMPDSSSGINLSPIEIKLKDIANIKTDFEDLSEYVE 281

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        ++  +              L+          +   +      S S  
Sbjct: 282 YNGLPSISLSVQKRSDANSIAVSNVVMSEIEKLKLSMPKDMRLEIASDSTNFIKASISTV 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L + V+F  +   +  ++   SI + +ILT  L+  +  +L + S+AG+ L
Sbjct: 342 VNSAYFGAMLAIFVIFFFLRSFRATIIIGISIPIAIILTFCLMYFVNISLNIMSLAGLAL 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           GIG+ VD +I+V + I +  +K   +  S  +G       I  S  T++        F  
Sbjct: 402 GIGMVVDCSIVVIDNIYKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKS 461

Query: 482 -----GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   + F+ T+ +S+ +S+  AI +V  +    +        +I       +   
Sbjct: 462 ELGVYGDFFKDFSFTIVISLGVSLLVAIFLVPVLSSHYVGLYTSFQRNIKSAFIRKIDVF 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            + I +     +   ++I+ +   I  L       G  F G +      +R  D S
Sbjct: 522 FLNIYYFLEFLYINLLNIVLNHKLIFGLIVFFSFIGSLFLGLLLDVTTFDRGKDNS 577



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 85/235 (36%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ + +  + +   +   +   + L      +   T+V   V   I   VP       +
Sbjct: 798  SSIATFEKTNKAESIYRENQALTIYLNAGISPNDNLTQVTAKVVDFINNKVPHKEGTVLK 857

Query: 656  IVGPKISRELIRKGIVGVIISAI-AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
            + G       I      +II AI  +   +  +F+ +      I T+ L     +    L
Sbjct: 858  VEGEYNEFSNIMNQFKIIIIMAIIVVFGIMASQFESFLKPFIIIFTIPLTAIGVVLIHFL 917

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G + ++ A   +L L+G  VN  +V+ D       L       R+ I +S        +
Sbjct: 918  AGEKLSIFAAIGMLMLVGVVVNTGIVLVD---YTGLLIKRGFKLREAIVESCRSRFRPIL 974

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +++ + I ++PMA     G  ++   A     G+  +   ++F    +     +
Sbjct: 975  MSALTSIIGLIPMAFSSGSGNELLKPIAFTFIGGMTASTFLTLFFIPMLFEIFSN 1029



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/285 (9%), Positives = 80/285 (28%), Gaps = 17/285 (5%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++  + +           + +      ++     +L      +           
Sbjct: 235 IEEIGNVVIAYKMPDSSSGINLSPIEIKLKDIANIKTDFEDLSEYVEYNGLPSISLS--- 291

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             V+ +           V+  ++K    +     ++        I   +          +
Sbjct: 292 --VQKRSDANSIAVSNVVMSEIEKLKLSMPKDMRLEIASDSTNFIKASISTVVNSAYFGA 349

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+ +  +    +   +    ++ + I  T        I  N+ ++A +   IG  V+ 
Sbjct: 350 MLAIFVIFFFLRSFRATIIIGISIPIAIILTFCLMYFVNISLNIMSLAGLALGIGMVVDC 409

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG------ 790
            +VV D +    K                 E +     ++  +     P  ++       
Sbjct: 410 SIVVIDNI---YKYRQKGAKLISSSILGAQEMMLPITSSTFTSICVFGPFLIFKSELGVY 466

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPI---LLFIYDWRAKNAR 832
           G     F+  +   + V+   +IF+   +    + +Y    +N +
Sbjct: 467 GDFFKDFSFTIVISLGVSLLVAIFLVPVLSSHYVGLYTSFQRNIK 511


>gi|114327978|ref|YP_745135.1| acriflavin resistance plasma membrane protein [Granulibacter
           bethesdensis CGDNIH1]
 gi|114316152|gb|ABI62212.1| acriflavin resistance plasma membrane protein [Granulibacter
           bethesdensis CGDNIH1]
          Length = 1037

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/609 (10%), Positives = 170/609 (27%), Gaps = 36/609 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
                 + + +  I +++          +   P       I +   L G S         
Sbjct: 6   PFIARPIATSLLAIAMMLGGLLGYLWLPVSSLPEVDFPT-IQVMTRLPGLS--------P 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 L    +     +      + +     ++ITL F  SR  ++ A  V   +   N
Sbjct: 57  TGSALLLTAPLERQFGQIPGLTSMISTSADGISQITLQFDLSRNMDSAAQDVQAAINAAN 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L  +       +      + +LS   +          +         ++       + 
Sbjct: 117 GTLPANLPYPPTYSKINPADAPILS-LALTSGTVPLDAIADITDTVLQPKLSQLPGVGRA 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                +   +     P RL     +   +       N +     F               
Sbjct: 176 TIQGSLRKAVRIRLLPDRLAAYGLSLEDVRNAVSNANVNGAKGGFDGA------------ 223

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           E  +++       +   +         +                +N      +       
Sbjct: 224 ERSIQLGANDQLVSPDAYRSLVIAWRNNAPVRLSNIASIVNGLENNHVGAWVLRS----G 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
           T           +   +   T+         L+          +          S +  +
Sbjct: 280 TQQSAVVLDIQRQPGANIVATVGAIREALPELQNALPAGVQLSIIADRTDTIRASVAEVE 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T  +   LV+ V+++ +   +  ++   ++ L++I T A++   G +L   S+  + + 
Sbjct: 340 ITLVLSILLVVAVIYLFLGSLRATIIPGIALPLSLIGTFAVMYEAGYSLDNLSLMALTIA 399

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG-- 481
            G  VD  I++ E +     +      +   G  +   TI    ++ +   + L F    
Sbjct: 400 TGFVVDDAIVMIENVVRYIERGVPPLQAAYEGARQIGFTIISLTVSLVAVFIPLLFMSGV 459

Query: 482 -GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-------MKSIDINPLSRFFL 533
            G   + FAIT+ +++++S   ++++   M   ++R           +  +    +   +
Sbjct: 460 VGRLFKEFAITLTVAVVVSAVISLTLTPMMCGRLLRPLHEERPGLLPRLFERGFSACLEV 519

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               + I         +      +I  +  + T          G I +   A++ V +  
Sbjct: 520 YRRTLHIALAHQGVVLLVAFSSLAITILLYVMTPKGFLPAQDTGIITIVTEADQSVSIKR 579

Query: 594 VRSNLESLQ 602
           + +   +  
Sbjct: 580 MGTLQNNAA 588



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/197 (11%), Positives = 63/197 (31%), Gaps = 10/197 (5%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI- 670
            G +   V L  Q          +  +++ + E+           +    +  +      
Sbjct: 278 SGTQQSAVVLDIQRQPGANIVATVGAIREALPELQNALPAGVQLSIIADRTDTIRASVAE 337

Query: 671 --VGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             + +++S + ++  I          +     L L +  T       G   +  ++ A+ 
Sbjct: 338 VEITLVLSILLVVAVIYLFLGSLRATIIPGIALPLSLIGTFAVMYEAGYSLDNLSLMALT 397

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              G+ V+D +V+ + +   ++     +       +   +     +  +++     +P+ 
Sbjct: 398 IATGFVVDDAIVMIENV---VRYIERGVPPLQAAYEGARQIGFTIISLTVSLVAVFIPLL 454

Query: 788 VWGGSV---IGSFAIPM 801
              G V      FAI +
Sbjct: 455 FMSGVVGRLFKEFAITL 471


>gi|120598548|ref|YP_963122.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
 gi|146293373|ref|YP_001183797.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
 gi|120558641|gb|ABM24568.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
 gi|145565063|gb|ABP75998.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
          Length = 1015

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/670 (11%), Positives = 202/670 (30%), Gaps = 47/670 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  I   GL+ +         L+ FP       +           +  +  
Sbjct: 9   KRPVTTSMFFFAILLFGLVSS-----RLLPLEMFPGIDIPQIV---------VEVPYKGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + +           Q   +I ++          + +    +  
Sbjct: 55  TPAEVERDITKILEESLATMGGIDELESESSQEGAEIEINMKWGENVATKSLEAREKIDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++  +   +  ++ ++  + + ++ +S A +      +Q    +   E   
Sbjct: 115 VRHLLPKDVERVFIRQFSTADMPVLTIRISSERELSGAFDLLD---KQLKRPLERVEGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         Q+    +  RL     +   +       N            +      + 
Sbjct: 172 KVNLYGVEQKQIEVRINADRLAASGISATDLQERLNRENFVISAGTLRASNIVYQVSPKG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  +I+ + L       D    +  +          + + V  D   +  A ++D  
Sbjct: 232 EFRNLEDINALVLIPGLTLGDIADVQFALPERVQGRHLDKHYAVGLDVFKESGANLVDVS 291

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                VI+QA    + Q    F +E                               S   
Sbjct: 292 ERVLKVIDQAKQDQQFQGIRLFIME-----------------------DQASGVKSSLMD 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  I A L  IVL++ +   K  LV   S+ +++ +TLA + LLG +L + S+ G++
Sbjct: 329 LLLSGLIGALLSFIVLYLFLRNLKMTLVVVSSVPISIGMTLAAMYLLGYSLNILSMMGLL 388

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L IG+ +D+ ++V E + +E +         S+  G  +    +    +T  I  +   F
Sbjct: 389 LAIGMLIDNAVVVTESVLQEKQGKHPKDNEESVMTGVDKVSLAVLAGTMTTAIVFLPNIF 448

Query: 480 ----FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                    +   AI + +S+  S+  A +++  ++  +      K    N    +    
Sbjct: 449 GVKVEITIFLEHVAIAICISLAASLLVAKTLIPLLLTKLHFDIPTKKETGNLQRFYNKSL 508

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           + + ++  R+    V   +  +   + ++     +     +  I   V     ++++   
Sbjct: 509 NWVLLRPWRSGMIAVA-ILTSTALPLSMVKQDQEDSQSKERIYINYQVEGRHNLNVTEAM 567

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            N     +     +                   + +  +   + +   +I       +  
Sbjct: 568 VNQMEEYLYKNKEEFHIDSVYSYYASDDGSSVILLKKDLPIPLDELKKKIRSGFPKYSIA 627

Query: 656 IVGPKISREL 665
                   + 
Sbjct: 628 KPQFGWGNDN 637



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 40/252 (15%), Positives = 88/252 (34%), Gaps = 14/252 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  ++ V      + +E     D            +     +     AQT++ ++++   
Sbjct: 749 VRIDQRVYTLDNLAKIEIQPRFDTIRHYNRQTSLSIGANLEEMTTEEAQTKIKQVMENIH 808

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT-LI 701
                  +++       +    +    ++ V      + I +   F+      AI T ++
Sbjct: 809 FPDGYNYSLRGGFERQDEDQSVMAINMLLAV----AMIYIVMAALFESLLLPAAIITSIL 864

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
             IT       L G   ++ A+  +L L+G  VN+ +V+ D++ +            D I
Sbjct: 865 FSITGVFWALFLTGTPNSVMAMIGILILMGIVVNNGIVLVDQINQMTPDLDK---LSDTI 921

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIGSFAIPMAFGIVVAASSSIFI 815
            +     L   + T     + +LP+A+       GG      AI +  G+  +  +S+++
Sbjct: 922 REVCITRLRPVLMTVGTTVLGLLPLALGETQIGGGGPPYYPMAIAIIGGLSFSTVTSLYL 981

Query: 816 AAPILLFIYDWR 827
                   Y  R
Sbjct: 982 VPLCYQAFYRMR 993



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 77/189 (40%), Gaps = 3/189 (1%)

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           + K  +      +   E     +   L+   + G+I + ++ ++           L  ++
Sbjct: 300 QAKQDQQFQGIRLFIMEDQASGVKSSLMDLLLSGLIGALLSFIVLYLFLRNLKMTLVVVS 359

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + I  TL    L G   N+ ++  +L  IG  +++ VVV + + +  K         
Sbjct: 360 SVPISIGMTLAAMYLLGYSLNILSMMGLLLAIGMLIDNAVVVTESVLQE-KQGKHPKDNE 418

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-IGSFAIPMAFGIVVAASSSIFIAA 817
           + +   +++     +  +M   I  LP  ++G  V I  F   +A  I ++ ++S+ +A 
Sbjct: 419 ESVMTGVDKVSLAVLAGTMTTAIVFLP-NIFGVKVEITIFLEHVAIAICISLAASLLVAK 477

Query: 818 PILLFIYDW 826
            ++  +   
Sbjct: 478 TLIPLLLTK 486


>gi|312114791|ref|YP_004012387.1| heavy metal efflux pump, CzcA family [Rhodomicrobium vannielii ATCC
           17100]
 gi|311219920|gb|ADP71288.1| heavy metal efflux pump, CzcA family [Rhodomicrobium vannielii ATCC
           17100]
          Length = 1055

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 83/674 (12%), Positives = 190/674 (28%), Gaps = 43/674 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N  +V++ +++   G + AL +      LD  P       I          +       
Sbjct: 11  RNIMVVLIATLLAIAGGIYALRHL----PLDAIPDLSDTQVI---------VYTNYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          + K  +         + + + F D         +V  +L   
Sbjct: 58  PQVVEDQVTYPLATAMLTVPKSKVVRAFSFFGVSFVYIIFEDGTDIYWARSRVLEYLNAA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L       L    T        + ++    ++         +R     +  +E   +
Sbjct: 118 QARLPTGITPVLGPDATSVGWVYQYAIHSKTLNLAETRSLQDFTLRY---GLAKAEGVAE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +   + Q     DP RLR L  +  K+       N    G    +         +  
Sbjct: 175 VASAGGFVKQYNVIVDPQRLRDLGISLDKIRDAIRASNADVGGRTLELSEFEYVVRGKGY 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++                      +   + G              P        +
Sbjct: 235 LRGVEDL-------------------RKIVVKVDNGTPVLLRDVSRIELGPDERRGITEL 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +  ++    I+      A L          +           +    
Sbjct: 276 NGEGEVASGIALQRFGLNALDVIDNVKKRMAELAPSLPAGTDIVPVYDRSNLIYAAIDTL 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T    + +V +V  + +L+ +  LVA   + + ++L  A +  LG    + S+ GI +
Sbjct: 336 KSTLLEESAIVALVCIVFLLHIRSALVAILMLPVGILLAFAAMRWLGLGANIMSLGGIAI 395

Query: 423 GIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            IG  +D  I++ E   +        +     L     +    +F S +   ++ + +F 
Sbjct: 396 AIGAMIDGAIVMIENAHKHLERAEPGKPRSEILIEAAKQVGPALFFSLLIITVSFMPIFT 455

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   S+  +   ++++V  +MI  +R K +             +  
Sbjct: 456 LESQEGRMFGPLAFTKTFSMAAAAILSVTLVPVLMILFVRGKIIPEHKNPINRVLIWLYR 515

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            I    ++AR   + +++     S+      G  +      G  L +     +    +  
Sbjct: 516 PIIKGVLKARTLTIVVALAVLGASVWPASQLGSEFMPTLDEGTLLYMPTT--LPGISITK 573

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             + LQ  D   + F    +   +       +      +      +            E 
Sbjct: 574 AADLLQTQDRIIKTFPEVASVYGKAGRAETSTDPAPTEMFETVINLKPKEEWRPGVTIES 633

Query: 657 VGPKISRELIRKGI 670
           +  ++ + L   G+
Sbjct: 634 LTAEMDKALQFPGV 647



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 62/159 (38%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             I++ + ++  + IR     AL AI  L + I          G+  N+ ++  +   IG
Sbjct: 343 SAIVALVCIVFLLHIR----SALVAILMLPVGILLAFAAMRWLGLGANIMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             ++  +V+ +   K+++         +++ ++  +      ++ +   +S +P+     
Sbjct: 399 AMIDGAIVMIENAHKHLERAEPGKPRSEILIEAAKQVGPALFFSLLIITVSFMPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     +
Sbjct: 459 QEGRMFGPLAFTKTFSMAAAAILSVTLVPVLMILFVRGK 497



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 71/229 (31%), Gaps = 18/229 (7%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                  V +          + V +  K  +  +   +          +  +  I K  + 
Sbjct: 806  ENGQLAVYIYVDMQGRDLGSYVADARKAVVDNVKFPTGTYVQWSGQFEYMQRAIAKLKIV 865

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++   + + +++ F      L  + +L   +   L      G   ++      + L G
Sbjct: 866  VPLTLAIIFLLLYLNFGTLTETLIVMLSLPFALVGGLWLMWWLGFNMSVAVAVGFIALAG 925

Query: 732  YSVNDKVVVYDRM------------RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
             +    VV+   +            R+      T       I +   E +   + T +A 
Sbjct: 926  VAAETGVVML--IYLDQALREVKAEREAQGEPFTKADLHRAIMRGAVERVRPKMMTVVAI 983

Query: 780  FISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               +LP+      G  V+   A+PM  G+V +   ++ +   I   +  
Sbjct: 984  MAGLLPILWSTGTGSEVMQRIAVPMIGGMVSSTVLTLVVIPAIYALVKG 1032


>gi|313901698|ref|ZP_07835129.1| protein-export membrane protein SecD [Thermaerobacter subterraneus
           DSM 13965]
 gi|313468049|gb|EFR63532.1| protein-export membrane protein SecD [Thermaerobacter subterraneus
           DSM 13965]
          Length = 415

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 129/380 (33%), Positives = 212/380 (55%), Gaps = 27/380 (7%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +       + V    I+ ++EIIR R+D +G++E  IQR G  RI+++L G  DP + 
Sbjct: 49  VVLQGVDKPGNPVTREKIDDAVEIIRNRVDALGVAEPVIQRQGEDRIVVELAGVDDPQKA 108

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF- 261
            + +G TA++ F                             +  V ++G  L        
Sbjct: 109 IETIGRTARLEF--------------------------LGPDGSVVVTGDQLVAGGIQVA 142

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
             +  +PVV + F+  G  +F E TR    +P+ +VLD +V+++P +   I +G+A+I+G
Sbjct: 143 ADQAGRPVVQLQFNAEGTEKFAEATRKFYRQPIFIVLDEQVISSPTVEAVITNGRAEITG 202

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
             T E A  LA  LR G+LP+ L +VE R V A LGSDS+ +   A++ G   +  F++V
Sbjct: 203 IPTFEEAQRLAVALRYGALPVDLQVVENRTVSATLGSDSLQRSVEAMIVGAAAVAAFILV 262

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           +Y   G  A  ++ + +++T   L  L ATLTLP IAG V+ +G+AVD+N+L+ ERI++E
Sbjct: 263 IYRIPGFWAVVALAVYMLITAGALYGLNATLTLPGIAGFVMSLGMAVDANVLIYERIKDE 322

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  +++  +L+ GF  A+S I DSN+T LIA  VL+  G G VRGFA+T+ + ++ SMF
Sbjct: 323 LRAGKTIRAALEAGFRNAFSAILDSNLTTLIAAAVLYGLGTGPVRGFAVTLAVGVVASMF 382

Query: 502 TAISIVRAMMIFIIRYKKMK 521
           TAI++ R  +  ++  +  +
Sbjct: 383 TAITLTRFFLRNLVDSELFR 402



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 27/193 (13%), Positives = 77/193 (39%), Gaps = 4/193 (2%)

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
           +      V  +   +     +     V   +  + +++ +  +I+ A A+  +I + ++ 
Sbjct: 207 EEAQRLAVALRYGALPVDLQVVENRTVSATLGSDSLQRSVEAMIVGAAAVAAFILVIYRI 266

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                A+  L + +  T G          L  +A  +  +G +V+  V++Y+R++  ++ 
Sbjct: 267 P-GFWAVVALAVYMLITAGALYGLNATLTLPGIAGFVMSLGMAVDANVLIYERIKDELRA 325

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                + R  ++          + +++   I+   +   G   +  FA+ +A G+V +  
Sbjct: 326 ---GKTIRAALEAGFRNAFSAILDSNLTTLIAAAVLYGLGTGPVRGFAVTLAVGVVASMF 382

Query: 811 SSIFIAAPILLFI 823
           ++I +    L  +
Sbjct: 383 TAITLTRFFLRNL 395



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 23/169 (13%)

Query: 1   MR-NNPWLVILYSM--ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           MR    W  +L  +  +  +G + A                  +NRI+ GLDL GG  +V
Sbjct: 1   MRARRRWRAVLALVASLAVLGGIAAWTLL----------EFKLQNRINRGLDLAGGVRVV 50

Query: 58  LE-VDEDD--FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIAD 113
           L+ VD+         +    + +R+ +   G+    +++   ++I +  A     +   +
Sbjct: 51  LQGVDKPGNPVTREKIDDAVEIIRNRVDALGVAEPVIQRQGEDRIVVELAGVDDPQKAIE 110

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
            +    +            +  V  T  ++     Q   DQ     ++ 
Sbjct: 111 TIGRTARLEF------LGPDGSVVVTGDQLVAGGIQVAADQAGRPVVQL 153


>gi|295134360|ref|YP_003585036.1| acriflavin resistance protein [Zunongwangia profunda SM-A87]
 gi|294982375|gb|ADF52840.1| acriflavin resistance protein [Zunongwangia profunda SM-A87]
          Length = 1043

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/649 (11%), Positives = 186/649 (28%), Gaps = 59/649 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +V+L++++   GL         +   +  P       ++L         + +   
Sbjct: 9   KRPTIVVVLFTILILGGLYS-----YSRLGYELLPKFS----LNL---------ITISTP 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   V   +    ++  S ++          +  + ++L+      +    +    
Sbjct: 51  YPGASSSEVENSVTKKIEDAISSVENVKKIESKSFEGLSTVSLTLTSDADENESLNDAQR 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  +   L  D     L   +  ++ I+      +            + ++    +  +
Sbjct: 111 KINAIEKDLPDDVDPPSLSKFSLSDLPIITIGATAN---MEETAFYDLLDKKIKPVLSST 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   Q         ++    DP +++    T  ++    +  N          R  R   
Sbjct: 168 KGVGQVTVIGGSEREIQVNIDPEKVKGFNLTLPQVVSIILSSNIDYPTGNLKTRHNRVLI 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 E+  E+                     ++        +        +      V
Sbjct: 228 RLSGKYENVEEL--------------------RNLVVSSTDGIQVRVRDIAEVRDTQQEV 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADL 356
                +            ++  +     E     L  M    +       V + +    L
Sbjct: 268 TKIARVNGKDAIIMQVMKQSDANAVEVSEAIYRSLQEMEAQYAGNQVKLPVVDDSSEFTL 327

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +         +   LV +V+   +   +   +   SI  ++I T   + LLG TL L S
Sbjct: 328 QASDAVMHDLILAVVLVAVVMLFFLHTIRNAFIVMVSIPASLIATFIGMYLLGYTLNLMS 387

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+ L +G+ VD  I+V E I       ++   +   G      T+    +  ++  + 
Sbjct: 388 LLGLSLVVGILVDDAIVVLENIYRHMEMGKNRVQAAYDGMIEIGFTVSAITLVIVVVFLP 447

Query: 477 LFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKSI 523
           +    G     +  F +T+ L+ L S+ ++ +IV  +                 + + S 
Sbjct: 448 IAMSTGLVSDLISQFCVTVILATLFSLLSSFTIVPWLSSRFGKLGKITGKNFFERIILSF 507

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +         +   +    +      + + +LF      L+        +      Q  V
Sbjct: 508 EKGLDKFTHFVSGLLKWSLVHKGKTTLIVMVLFIGSCSLLVMGFIGGEFLPPVDRGQFVV 567

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                 D S+  +NL + +   I  Q+ +  +      Q   G    Q 
Sbjct: 568 QLELNKDASLENTNLATQKAEKILSQHPEVNRLVTTVGQSSDGTVGTQE 616



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 82/259 (31%), Gaps = 15/259 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+++       VR   E         +         + +Q           V E + + +
Sbjct: 243 VVSSTDGIQVRVRDIAEVRDTQQEVTKIARVNGKDAIIMQVMKQSDANAVEVSEAIYRSL 302

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI-----YIWIRFKWYFALGAI 697
            E+         ++     S E   +    V+   I  ++      ++       A   +
Sbjct: 303 QEMEAQYAGNQVKLPVVDDSSEFTLQASDAVMHDLILAVVLVAVVMLFFLHTIRNAFIVM 362

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++   +  T     L G   NL ++  +  ++G  V+D +VV + +    +      + 
Sbjct: 363 VSIPASLIATFIGMYLLGYTLNLMSLLGLSLVVGILVDDAIVVLENI---YRHMEMGKNR 419

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
                  + E        ++   +  LP+A+  G    +I  F + +    + +  SS  
Sbjct: 420 VQAAYDGMIEIGFTVSAITLVIVVVFLPIAMSTGLVSDLISQFCVTVILATLFSLLSSFT 479

Query: 815 IAAPILLFIYDWRAKNARI 833
           I      ++     K  +I
Sbjct: 480 IVP----WLSSRFGKLGKI 494



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           LI + +   + + L  + ++ L     L   AL     N+  +  ++  IG    + +++
Sbjct: 876 LILVVLYDSYLYPLVVLFSIPLSFIGALWALALTNNALNIFTILGIIMGIGLVAKNAILL 935

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
            D            +     +  + +  L   + T++A  I ++P+A+    G  +    
Sbjct: 936 VDF---TNHQKAEGLDTFTALVNANHARLRPILMTTIAMVIGMIPIALASGAGAELNNGL 992

Query: 798 AIPMAFG 804
           A  +  G
Sbjct: 993 AWVIIAG 999


>gi|224827224|ref|ZP_03700319.1| acriflavin resistance protein [Lutiella nitroferrum 2002]
 gi|224600617|gb|EEG06805.1| acriflavin resistance protein [Lutiella nitroferrum 2002]
          Length = 1034

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/524 (11%), Positives = 141/524 (26%), Gaps = 38/524 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
                 FP+                    L     + +   +    +     +       
Sbjct: 36  SLPQVDFPTIQ--------------VQAQLAGASPETMAATVATPLERTLGRIAGVNEIT 81

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            +  Q   +I L F  +R     A  V   +    + L                 + VL 
Sbjct: 82  STSSQGSTRIVLQFDLNRDSNGAAKDVQGAINAALANLPSALSGTPTYRKVNPSEAPVLI 141

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
              +                    ++   +   Q       L  +    DP+ L +   +
Sbjct: 142 -LTLTSDTLTKGRLYDIASTVLAQKLSQVDGIGQVTVGGGALPAVRVALDPTALSRHGVS 200

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
              +              +      +    +   +    +  G                 
Sbjct: 201 FDAVRRAIQNYTLKLPLGVLEDAGRQWQLASNDQLNRAADYRG----------------- 243

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
              +                 +   +  V +  +         +       +   T+E  
Sbjct: 244 ---LIVHYQDGAALRLADVATVSDSVQDVRNAGLANGKPAIVLLLFRAPGANVIDTVERV 300

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             L   L A         V +        S    + T      LV++V+F+ +  G+  L
Sbjct: 301 RALMPQLSASVPQTATLTVTQDRTSTIRASLRDVERTLVTAVALVVLVVFLFLQSGRATL 360

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           V   ++ +++I T  ++ L G +L   S+  + +  G  VD  I+V E I        + 
Sbjct: 361 VPAITVPVSLIGTFGVMYLAGFSLNNLSLMALTIATGFVVDDTIVVLENIARHIENGMTP 420

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAIS 505
             +   G      T+   +++ +   + +   G   G   R FA+T+  +IL+S+  +++
Sbjct: 421 RAAAFRGAREVGFTVLAMSLSLIAVFIPILLMGDIVGRLFREFALTLSAAILVSLVVSLT 480

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
               +    +R +  +    +  +R+        +   R     
Sbjct: 481 TAPMLCSRWLRPRPPRPAAPSRFARWRAQWFERLVAGYRRSLAW 524



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 54/132 (40%), Gaps = 6/132 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    T+ + +  T G   L G   N  ++ A+    G+ V+D +VV + +    + 
Sbjct: 357 RATLVPAITVPVSLIGTFGVMYLAGFSLNNLSLMALTIATGFVVDDTIVVLENI---ARH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVV 807
               ++ R    +   E     +  S++     +P+ + G   G +   FA+ ++  I+V
Sbjct: 414 IENGMTPRAAAFRGAREVGFTVLAMSLSLIAVFIPILLMGDIVGRLFREFALTLSAAILV 473

Query: 808 AASSSIFIAAPI 819
           +   S+  A  +
Sbjct: 474 SLVVSLTTAPML 485



 Score = 46.2 bits (107), Expect = 0.020,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 87/234 (37%), Gaps = 6/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +Q  +         +     + +     V+       +   +  +    ++  + 
Sbjct: 782  ATVSRVQPDNTPLAVNHQGQFAATTVSFNLDPGVSIGAARAAIDGAVNRLGLPGSLVGSF 841

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALF 714
                +  +  +      ++ +  A+ I + I ++     +  ++TL       +    L 
Sbjct: 842  QGSARAFQASLDSQPWLILAALAAVYIVLGILYESAIHPITILSTLPSAGVGAILALQLS 901

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G E N+ A+  VL LIG    + +++ D            ++ R+ I ++        + 
Sbjct: 902  GGELNVVAMIGVLLLIGIVKKNAIMLID--FALAAERKQGLAPREAILEAGVLRFRPILM 959

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+MAA +  LP+A+    G  +     I +  G++V+   +++    + L++  
Sbjct: 960  TTMAALLGALPLALGHGEGAELRQPLGISVVGGLIVSQLLTLYTTPVVYLYMDR 1013


>gi|163801233|ref|ZP_02195132.1| putative cation efflux system transmembrane protein [Vibrio sp.
           AND4]
 gi|159174722|gb|EDP59522.1| putative cation efflux system transmembrane protein [Vibrio sp.
           AND4]
          Length = 1059

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/632 (11%), Positives = 172/632 (27%), Gaps = 40/632 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++ N    + +D  P       I                  
Sbjct: 11  NNRFLVLIATLALVLGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     E           ++   +   +
Sbjct: 118 APKLPPNAKPTLGPDATGVGWVYSYV-LQDKTGKHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   E G         D    P        +
Sbjct: 237 LTSIEDIK------------------SLPLKVTEKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I       A L+ G       +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVITKVKDKLAELQHGLPEGVEIVATYDRSTLIDAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WQKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVISNAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLPEHKNPVNRGLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLL-FTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             +    ++     + I++     +                +G +         + +   
Sbjct: 519 RPLLNTSLKYPKTMIVIALGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
           R  L+       +          + R +    
Sbjct: 579 RELLQQTNKLIKTIPEVQTVWGKIGRAETATD 610



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 77/287 (26%), Gaps = 20/287 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  +                   +    L    +V + I
Sbjct: 816  WVFVDIDGRDLGSYVVEAQQVVADQLELPAGYSLAWSGQYEYMERAKDRL--SVVVPITI 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYS 733
            + I +L+Y   R         I  L L +    G     +    F++      + L G +
Sbjct: 874  AIIMLLLYFSFR---RVGEVMIIMLTLPLAMVGGLWLMHILNYNFSIAVGVGFIALAGVA 930

Query: 734  VNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++   +           +       +    D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHHKKLDAEETMQKLEAKDLTDAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +P+      G  V+   A PM  G+  A   ++ +   I        
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQRE 1037



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 70/217 (32%), Gaps = 13/217 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D+++       +   +   +   G              +  + ++ E+       + 
Sbjct: 261 DIADINLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVITKVKDKLAELQHGLPEGVE 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            ++T   + ++   +     +     ++++ +  L      F    +L    +L + I  
Sbjct: 321 IVATYDRSTLIDAAVENLWQKLAEEFIVVAIVCAL----FLFHIRSSLVIALSLPVGILT 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LI 761
                   GI  N+ ++  +   IG  V+  +V+     +N+  +       D     +I
Sbjct: 377 AFIVMHWQGINANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVI 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
             +  E      ++ +   +S +P+    G     F+
Sbjct: 433 SNAAEEVGAPLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|126700022|ref|YP_001088919.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile 630]
 gi|115251459|emb|CAJ69292.1| putative multidrug efflux pump [Clostridium difficile]
          Length = 1044

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/600 (12%), Positives = 173/600 (28%), Gaps = 44/600 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++++ ++   G +        +  ++  P       +                 
Sbjct: 9   KRPLTIIMVFLVLIVFGGI-----GYKKMSINLMPDIEIPVVM---------VMTTWTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V+  +    DE  S +      + S ++  + +   F      + I + V   +  
Sbjct: 55  GPQDVDEQVSQKVDESLSAVSNVKSTISSSQESVSMVVAQFEFGTNLDEIMNDVRSKVDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D  K  ++       +I     +     + +             +I   +   
Sbjct: 115 LQTSLPDDAAKPTVLKLDMNAQAIGQLVISGGN-ENSSQALRKYAEDVIQPKIESIDGVT 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+    DP+ L     + + +       N +                   
Sbjct: 174 SADLKGGKKAQVNVIADPAVLSNYGVSLSTIKGVLSSSNKTFPYGS-------------- 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G       A    ++   +  I     G          ++    A      
Sbjct: 220 ------ITQGEDKIVLRAIDKLESLDDIKQIQIPVKGGNTVRLDNLCSVDYGYADKDSIY 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S +   +    +++A      L   +       +          S + 
Sbjct: 274 RYNGKDSLVIDISKQQDANTVKVMQSAYKYVDELNKENPQF-KIKIANDTSSYISESINS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A +  IV+F  +   +  LV   +I +++I  +A+L   G +L L + + +V
Sbjct: 333 VMSNLLISAVIAFIVIFAFLKSVRASLVVAVAIPISIIGAIAILYFTGESLNLITASSLV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + +G+ VD+  +V E I +  +  + S+      G     + I  S +T +   + + F 
Sbjct: 393 ISVGMVVDNATVVIENIFKYRKSGRLSLDDCAIEGTRTVTNAILASTLTTIAIFLPIMFT 452

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G           T+  S+  S   AI++V ++   + R K  + +       F  + + 
Sbjct: 453 EGIAKITFGALGKTLIASLAFSFIGAITLVPSVFAKLSRGKNSQKMQEKDSPIFDKVSEA 512

Query: 538 IAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                       R   +   ++F      + F          KG + + +   + + L  
Sbjct: 513 YKKLLSVCLRHQRLVVISSLLIFVASLFGMGFIGMDFMPAADKGELSISIELPKGLSLES 572



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 90/253 (35%), Gaps = 8/253 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +  N      V       +++ D        + +F V +     +  A T     ++K 
Sbjct: 762  QLKVNSATGKEVPLGAFSDIKMADGLQSISRTDGDFSVNITATLDNLDAGTATKLALEKT 821

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
               ++P             ++  +   G   ++I+   + + +  +F+  F+   I    
Sbjct: 822  NKMVIPKDYSIGVGGETEMMNESMASLGF-SMVIAIALVYMVMVAQFE-SFSKPFIIMFC 879

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +         +L   G   +   +  ++ LIG  VN+ +V+ D + + ++    +     
Sbjct: 880  VPFAFVGVVLSLLVSGQSLSTVGMLGIILLIGIVVNNGIVLIDYI-EQLRKTNRNNDLIG 938

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
            L+       L   + T+    + +LP A+    GG  +   AI +  G+ V+   ++ + 
Sbjct: 939  LVSIGCAARLRPVLMTTATTILGMLPTALSLGEGGETMQPLAIVIMGGLTVSTLITLVLI 998

Query: 817  APILLFIYDWRAK 829
              I L    W  K
Sbjct: 999  PTIYLIFDKWENK 1011



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/261 (9%), Positives = 71/261 (27%), Gaps = 7/261 (2%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               Q+ +       + +           D         K+ LV    +  D+     + 
Sbjct: 239 DDIKQIQIPVKGGNTVRLDNLCSVDYGYADKDSIYRYNGKDSLVIDISKQQDANTVKVMQ 298

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF--KWYFA 693
              K            +                 ++  ++ +  +   +   F      +
Sbjct: 299 SAYKYVDELNKENPQFKIKIANDTSSYISESINSVMSNLLISAVIAFIVIFAFLKSVRAS 358

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + I   +      G   NL   ++++  +G  V++  VV + + K  K    
Sbjct: 359 LVVAVAIPISIIGAIAILYFTGESLNLITASSLVISVGMVVDNATVVIENIFKYRKSG-- 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI---PMAFGIVVAAS 810
            +S  D   +         + +++      LP+    G    +F      +   +  +  
Sbjct: 417 RLSLDDCAIEGTRTVTNAILASTLTTIAIFLPIMFTEGIAKITFGALGKTLIASLAFSFI 476

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            +I +   +   +   +    
Sbjct: 477 GAITLVPSVFAKLSRGKNSQK 497



 Score = 47.4 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 49/525 (9%), Positives = 141/525 (26%), Gaps = 39/525 (7%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R+   +VI   +I    L       +                +  GL L          
Sbjct: 521  LRHQRLVVISSLLIFVASLFGMGFIGMDFMPAADKGELSISIELPKGLSL---------- 570

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            + +D+     +    ++                 +  I +     + ++   D++   + 
Sbjct: 571  ESNDYYVSMTEKKVSDIPEIKTLITTLTSDSNNSKASIAIELESQKNRKRTTDEIEKEII 630

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               + +          ++             +       ++   +   +    I    + 
Sbjct: 631  DRVATVPDCKINVSQNSSVMGGAGGADFTLEMKGPDLDVLKILGKEAEKEFSSIKGFRNV 690

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
               L       Q     D  + ++    TA+++       N        +   +     +
Sbjct: 691  ETSLTDTTQEAQFT--IDKHKAQEYGVNTAEIAGMLRTAINGDSVTTATIDDYKVDVNLK 748

Query: 241  YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +  +    +  I      +    +             G +       D            
Sbjct: 749  FKADTIDSLEDIKQLKVNSATGKEVPLGAFSDIKMADGLQSISRTDGD------------ 796

Query: 301  RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                         +  A +          +         +P   +I           S +
Sbjct: 797  ----------FSVNITATLDNLDAGTATKLALEKTNKMVIPKDYSIGVGGETEMMNESMA 846

Query: 361  IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                +  I   LV +V+           +  F +    +  +  L + G +L+   + GI
Sbjct: 847  SLGFSMVIAIALVYMVMVAQFESFSKPFIIMFCVPFAFVGVVLSLLVSGQSLSTVGMLGI 906

Query: 421  VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY--STIFDSNITALIATVVL- 477
            +L IG+ V++ I++ + I +  + N++      +    A     +  +  T ++  +   
Sbjct: 907  ILLIGIVVNNGIVLIDYIEQLRKTNRNNDLIGLVSIGCAARLRPVLMTTATTILGMLPTA 966

Query: 478  --FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
                 GG  ++  AI +   + +S    + ++  + +   +++  
Sbjct: 967  LSLGEGGETMQPLAIVIMGGLTVSTLITLVLIPTIYLIFDKWENK 1011


>gi|320159067|ref|YP_004191445.1| cobalt-zinc-cadmium resistance protein CzcA; cation efflux system
           protein CusA [Vibrio vulnificus MO6-24/O]
 gi|319934379|gb|ADV89242.1| cobalt-zinc-cadmium resistance protein CzcA / cation efflux system
           protein CusA [Vibrio vulnificus MO6-24/O]
          Length = 1042

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/644 (11%), Positives = 173/644 (26%), Gaps = 39/644 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++ N    + +D  P       I                  
Sbjct: 11  NNRFLVLIATLFLTLGGLYSVKN----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   E   +
Sbjct: 118 APKLPPNAKPTLGPDATGVGWIYSYV-LQDKTGKHDLAQLRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P         
Sbjct: 237 LSSVEDI------------------QSLPLKVTDKGTPLLLGDIADINIGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+      A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASQVIDNVKAKLADLQRSLPEGVEIVSTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V +V  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR   +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGNVLPEHKNPVNKGLVSLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    ++     + +++     +       G  +      G  + +    P       
Sbjct: 519 RPLLSLSLKYPKSMIVLALGLMASAYYPTSQLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L       I            +       D    T +  +++
Sbjct: 579 RELLQQTNKLIKTVPEVETVWGKIGRADTATDPAPLTMIETVIQ 622



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 82/287 (28%), Gaps = 20/287 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S  Q     + ++                   +    L     V V I
Sbjct: 816  WVFVDIDGRDLGSYVQEAQSVVAEQLELPAGYSLAWSGQYEYMERAKERLS----VVVPI 871

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYS 733
            +   +++ ++  F+       I    L +    G       G  F++      + L G +
Sbjct: 872  TLAIIMLLLYFSFR-RVGEVLIIMATLPLAMVGGLWLMHYLGYNFSIAVGVGFIALAGVA 930

Query: 734  VNDKVVV---------YDRMR-KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++         Y ++  +  KL   +    D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHYKKLHAEENKLSLVAQDLTDAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +P+      G  V+   A PM  G+  A   ++ +   I        
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKSKE 1037



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 66/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           N+       IS  N +GE    V +     ++      ++     +   +P      +  
Sbjct: 266 NIGPQMRRGISEFNGEGEAVGGVIVMRFGENASQVIDNVKAKLADLQRSLPEGVEIVSTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + +      F    +L    +L + I          G
Sbjct: 326 DRSTLINAAVENLWKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|145590166|ref|YP_001156763.1| acriflavin resistance protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145048572|gb|ABP35199.1| acriflavin resistance protein [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 1011

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/521 (11%), Positives = 155/521 (29%), Gaps = 47/521 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPS----AMPKNRISLGLDLRGGSHLV 57
           R     +++ +++   GL       +    ++++P      +       G D        
Sbjct: 9   RRPVLSLVVSALVLVFGL-----KAIGSLPVNQYPQTQNAIVTITTAYYGAD-------- 55

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 + + GF+    +   +  +       +     + I  +   +        ++  
Sbjct: 56  -----PETIAGFITQPLEASIAQAQGIDYLSSTSVSGVSTIIATLKLNYDSNAALTQIQT 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V ++L    ++ +L     +  + +      D++ ++AI  +  ++R    ++   
Sbjct: 111 QISAVKNQLPPQAQQPVLTVQVGQSTAAMYMGFYSDEIPNNAI--TDYLLRVVKPKLDSV 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E       +      L    D  ++  L      +       N                D
Sbjct: 169 EGVQNAEITGGRKFALRAWLDREKMAGLGVGADDVFSAMSANNYLSAVGSTK------GD 222

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +    ++               T      +     G    +      +       
Sbjct: 223 MVSVDLVAGTDL--------------HTLDEFRKLVIKNDGVNIVYLDQVATVTLGSEDY 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                 +             Q +     +    +   ++          +   +      
Sbjct: 269 NTNVAFSGKKSVFIAIKVAPQANLLDVAQRVRDVVPSIQKQLPIGMTGKIVYDSTIFITS 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V +V+++ +   +   V   ++ L++I T  L+ +LG ++ L ++
Sbjct: 329 SIDEVVSTLLEALFIVTVVIYLFLGSVRAVAVPVIAMPLSLIGTFFLMQILGYSINLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +    ++ +S   +  +        I    +  +   + +
Sbjct: 389 LALVLAIGLVVDDAIIVVENVDRHMKEGKSPLEASLIAARELGGPILAMTVVLIAVYIPI 448

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
            F G   G     FA T+  ++ +S   A+++   M   I 
Sbjct: 449 GFQGGLTGALFTEFAFTLASAVAVSGLIALTLSPMMCSRIF 489



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 91/281 (32%), Gaps = 12/281 (4%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            +    S+      +            D      +   +   V    + S  + +    I+
Sbjct: 728  YVNYFSVAGRSYKVIPQVKQVDRLNPDQILDYYIRTPSGAMVQARTIASIKQKVVPQSIN 787

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                                +     + + +K+       +     +     +    L+ 
Sbjct: 788  HFQQLNSATISGVSTPFISQADLLEYMRQTLKEVAPNGYSMDYAGPSRQFMAESGGFLVT 847

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                 +  + + + + +  +F+ +   +  + ++ + +   L F  L     N+     +
Sbjct: 848  -----MFFAILIVFLVLAAQFESFRDPIVILVSVPMALFGALIFINLGFTTLNVYTQVGL 902

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TL+G      +++ +   +   L     S  D I ++ +  L   + T+ A  + VLP+
Sbjct: 903  VTLMGLISKHGILIVEFANE---LQEAGRSKLDAIVEASSVRLRPILMTTAAMVLGVLPL 959

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +    G +   S  I +  G+ +    ++F+   + LFI 
Sbjct: 960  VIASGAGAAGRQSMGIVIFTGLSIGTLFTLFVVPAMYLFIG 1000



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 73/188 (38%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            V+  ++K++   +    + ++ I       E++   +  + I  + + +++        
Sbjct: 301 DVVPSIQKQLPIGMTGKIVYDSTIFITSSIDEVVSTLLEALFIVTVVIYLFLG---SVRA 357

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
               +  + L +  T     + G   NL  + A++  IG  V+D ++V + +    +   
Sbjct: 358 VAVPVIAMPLSLIGTFFLMQILGYSINLLTLLALVLAIGLVVDDAIIVVENV---DRHMK 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              S  +    +  E  G  +  ++      +P+   G   G++   FA  +A  + V+ 
Sbjct: 415 EGKSPLEASLIAARELGGPILAMTVVLIAVYIPIGFQGGLTGALFTEFAFTLASAVAVSG 474

Query: 810 SSSIFIAA 817
             ++ ++ 
Sbjct: 475 LIALTLSP 482


>gi|312889494|ref|ZP_07749046.1| acriflavin resistance protein [Mucilaginibacter paludis DSM 18603]
 gi|311298046|gb|EFQ75163.1| acriflavin resistance protein [Mucilaginibacter paludis DSM 18603]
          Length = 1490

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/536 (9%), Positives = 145/536 (27%), Gaps = 40/536 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++       +G L  +         +  P+                        
Sbjct: 9   KRP---ILFIVFFLILGGLSMIS--YQNLKYELLPNLATPTIT---------VITAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    ++  + + K            + +++ F      +    +V   +  
Sbjct: 55  SPEDVENSVTKKIEDAVAGVSKSKKVNSLSADNVSVVSIEFVADANPDQAMQEVQRSVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +      K  +L      ++ ++              E    +  +   ++   +   
Sbjct: 115 TLADFPEGVKAPVLEKFNVNDLPVLKLAV---TASVSPTELYDLVNNRLKPRLAQVKGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++       +L     +   +       N          R  +       
Sbjct: 172 KVKILGGTPKEIKVLAKQDKLISNGLSITDVYETIRKANADYPVGTIKDRDAQFGVKLGG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D  ++S + +                                   +           
Sbjct: 232 KMTDTNQVSNLKIKTYP-------------------DGSSLSVRDVATVQIGHKDEEVSS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L          + ++  +     +     L  M +  +       V + +    L +  
Sbjct: 273 RLDGQSSIALFINKQSGANAAEVTKVVREELHQMEQEYAAQKIKFNVAQDSSEFTLEAAH 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I   LV +V+ + +   +  L+   SI  ++     ++  L  +L L ++  +
Sbjct: 333 QVYDDLGIAIVLVALVMLVFLHSIRNALIIMVSIPASLFSAFIMMYALDYSLNLMTLLAM 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVL 477
            L IG+ VD +I+V E I     K +    +   G +    A  +I   ++   +   ++
Sbjct: 393 SLVIGVLVDDSIVVLENIYHHLEKGKDKRDAALDGRNEIGFAALSITLVDVVVFLPMALV 452

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
               G  ++ F++ + +S L S+  + ++   +     + + +    I   +  + 
Sbjct: 453 PGLVGSLIKEFSLVIVVSTLSSLVVSFTLTPMIASRFAKLEHLNPKTIFGKAGLWF 508



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 58/412 (14%), Positives = 121/412 (29%), Gaps = 23/412 (5%)

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
               +  E   + +   ++        ST+ D         +  F      V   A+T  
Sbjct: 87  NVSVVSIEFVADANPDQAMQEVQRSVNSTLADFPEGVKAPVLEKFNVNDLPVLKLAVTAS 146

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ--------FMRA 545
           +S         + ++  +  +    K+K +   P     L      I         +   
Sbjct: 147 VSPTELYDLVNNRLKPRLAQVKGVGKVKILGGTPKEIKVLAKQDKLISNGLSITDVYETI 206

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R       +                   D      L +          VR          
Sbjct: 207 RKANADYPVGTIKDRDAQFGVKLGGKMTDTNQVSNLKIKTYPDGSSLSVRDVATVQIGHK 266

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
               +   +    + L            V ++V++++ ++      Q  +    + S E 
Sbjct: 267 DEEVSSRLDGQSSIALFINKQSGANAAEVTKVVREELHQMEQEYAAQKIKFNVAQDSSEF 326

Query: 666 IRKGIVGV----IISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
             +    V     I+ + + + +         AL  + ++   +              NL
Sbjct: 327 TLEAAHQVYDDLGIAIVLVALVMLVFLHSIRNALIIMVSIPASLFSAFIMMYALDYSLNL 386

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             + A+  +IG  V+D +VV + +             RD      NE    ++  ++   
Sbjct: 387 MTLLAMSLVIGVLVDDSIVVLENI---YHHLEKGKDKRDAALDGRNEIGFAALSITLVDV 443

Query: 781 ISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +  LPMA+  G   S+I  F++     IVV+  SS+ ++  +   I    AK
Sbjct: 444 VVFLPMALVPGLVGSLIKEFSLV----IVVSTLSSLVVSFTLTPMIASRFAK 491



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 80/199 (40%), Gaps = 4/199 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWY 691
             V + +K++I +I     ++       +   +      + +++S   + LI + +   W 
Sbjct: 825  DVGDDIKQEIDKIGLSKNVKILYEGDLEQQGDAFSDLGLALLVSFALIYLIMVTLYNNWL 884

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            F    + ++ L I+  L   AL     N+ ++  ++ ++G  V + +++ D+    +K  
Sbjct: 885  FPFVILFSIPLAISGALLALALTARSLNVFSIFGLIMMMGLVVKNGILLVDKTNALLKDE 944

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVA 808
              +      + ++        + T++A  I +LP+A+  G         A  +  G+  +
Sbjct: 945  PDTTKVNQALIEAGKARFRPILMTTLAMVIGMLPLAMAKGGSSAFSGGIASVLIGGLSSS 1004

Query: 809  ASSSIFIAAPILLFIYDWR 827
               ++ +   +   +   +
Sbjct: 1005 MFLTLVVVPVVYNTMMRLK 1023



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 74/523 (14%), Positives = 165/523 (31%), Gaps = 43/523 (8%)

Query: 9    ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            ++  +I       +L      ++   F  A  K  +SL +DL+ G+ L         +  
Sbjct: 531  VVIGLIAATIFGSSLLLLTSNTVGTEFLPAADKGELSLFVDLQPGTKLKETDSTVRIIEN 590

Query: 69   FLQMYSDELR------SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV-TLFLQG 121
             L+   +  +                         I +S      +     ++       
Sbjct: 591  KLKSIPEITKVFSNTGYQNDGFNEKYS---ANLASINISLVPETERTKSLSQLSRDLKAL 647

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                  V  + + +      E  + L     ++   +A    +    +R++ +       
Sbjct: 648  SMQITGVKSRVSPIGLFGANEAPVQLLITGTNRDSVNAAAAVVLDRIRRVNGL-----VS 702

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             RL +     ++    D  ++ +L   T  +     +         F  +        Q 
Sbjct: 703  PRLSTDLGKPEMKLVADRDKMAKLGLNTEAVGDAMRMAVYGNDQLKFRDQDKETDTRIQL 762

Query: 242  LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             V D+ +                    ++ ++F     +  +      I +        R
Sbjct: 763  DVNDRNQT-----------------DQLMKLTFINADNQLVYLSQFAKIVQQSGPSGLER 805

Query: 302  VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                P IN       AQ+SG    +    +   +    L   + I+ E ++     + S 
Sbjct: 806  RNKQPSINLL-----AQVSGRPVGDVGDDIKQEIDKIGLSKNVKILYEGDLEQQGDAFSD 860

Query: 362  YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  +   L+ +++  +     +  V  FSI L +   L  L+L   +L + SI G++
Sbjct: 861  LGLALLVSFALIYLIMVTLYNNWLFPFVILFSIPLAISGALLALALTARSLNVFSIFGLI 920

Query: 422  LGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + +GL V + IL+ ++     +          +L       +  I  + +  +I  + L 
Sbjct: 921  MMMGLVVKNGILLVDKTNALLKDEPDTTKVNQALIEAGKARFRPILMTTLAMVIGMLPLA 980

Query: 479  FFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
               GG+     G A  +   +  SMF  + +V  +   ++R K
Sbjct: 981  MAKGGSSAFSGGIASVLIGGLSSSMFLTLVVVPVVYNTMMRLK 1023


>gi|166710433|ref|ZP_02241640.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 1046

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 145/544 (26%), Gaps = 38/544 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLGVASLPNIQIPIIF--------------VHATQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + L F  SR  ++ A  +   +  
Sbjct: 55  DASTMASTVTAPLERHLGQLPGIDRMRSSSSESSSVVVLVFQSSRNIDSAAQDIQTAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       +  ++      +     A E           ++       
Sbjct: 115 SQSDLPSGLGTPMYSKANPNDDPMIAIALTSE--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  TT  +       N +             +     
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTTDNLRNAVRAANVTSPTGFLSDGNTTMAIIAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVSKAAD-------------------FAQLAIATQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR+   P                S   
Sbjct: 274 WFNGKPAVVMYAFTRAGANIVETVDQVKAQIPELRSYLQPGTTLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG TL   S+  +V
Sbjct: 334 VQATLMISLAMVILTMALFLRRLAPTLIAAITVPLSLAGSALVMYVLGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E +     +  S   +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDDAIVVIENVMRHLDEGMSRMEAALAGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + + +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSAHAEPEKPGRFGAWLDRMHERM 513

Query: 539 AIQF 542
              +
Sbjct: 514 LRVY 517



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 338 LMISLAMVILTMALFLRRLAPTLIAAITVPLSLAGSALVMYVLGFTLNNLSLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           + V+D +VV + +   M+     +S  +       E +G ++ +  A+ ++V    ++  
Sbjct: 398 FVVDDAIVVIENV---MRHLDEGMSRMEAALAGARE-IGFTIVSITASLVAVFIPMLFAS 453

Query: 792 SVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
            +I      F + +   IVV+   S+ +   +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPAL 485


>gi|163745213|ref|ZP_02152573.1| Cation/multidrug efflux pump [Oceanibulbus indolifex HEL-45]
 gi|161382031|gb|EDQ06440.1| Cation/multidrug efflux pump [Oceanibulbus indolifex HEL-45]
          Length = 1043

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 77/642 (11%), Positives = 171/642 (26%), Gaps = 47/642 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   V++  ++  + +       +P+      P  +P                 LE    
Sbjct: 10  SRGRVVILGLVMILLVGAYAYVGIPKESSPEIP--IPTLY----------VSTTLEGISP 57

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           +     L    +   S +        +  +    + L F      +   DKV   +    
Sbjct: 58  EDSERLLVEPLETELSAITGLKQITSNGAEGHASVQLEFEPGFDSDEALDKVREGVDRAK 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S L  D    ++         I+ +  +           S E      D I      ++ 
Sbjct: 118 SDLPEDATDPVVTEINTALFPILTAILSGPVPERTLNRISEE----LKDAIEGLSGVLEV 173

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                    L    DP+       +  ++                        + N  L+
Sbjct: 174 DVGGERTELLEVLIDPTVFETYNISFEELISQI--------------------NRNNRLI 213

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                 SG            +  + V+ +     G           I +          +
Sbjct: 214 AAGAIESGAGRLVLKVPGLIEDVEDVMSLPIKVRGDTVVTFADVATIRRTFKDPTGFARI 273

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       ++  +   T+     L   +R            +          S  +
Sbjct: 274 DGQPALALEIKKRSGANIIETVAAVRELIDEMRTEWPDSITVKYTQDESEQVQSMLSDLE 333

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   LV+IV+   +      L+   +I    +  +  L ++G T+ L  +  ++L 
Sbjct: 334 ANVIAAVILVMIVIVWALGVR-SALLVGLAIPGAFLAGVTALWVMGYTMNLVVLFSLILV 392

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG-- 481
           +G+ VD  I+  E      ++  S   +      R    I  S  T L     L F+   
Sbjct: 393 VGMLVDGAIVTTELADRRLQEGHSPRAAYAHAAKRMSWPIIASTATTLSVFFPLLFWTGT 452

Query: 482 -GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G  ++   IT+ L++  S+F A+  +  +   I +     + D   L            
Sbjct: 453 VGEFMKFLPITVILTLTASLFMALVFIPVVGGIIGKRPPQSAKDKATLYAAEQGDPRDLK 512

Query: 541 QFMR-------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            F                ++++ +I  +   FT    +G       ++     +    + 
Sbjct: 513 GFTGGYVKLLQFAILRPWMTLILAISMLMGGFTAYAQFGNGITFFPEVEPDFAQVQVRAR 572

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
              ++          +    E + +  +  + G     +  L
Sbjct: 573 DNFSIYEQDELVRQVEQRLFEYDEIASVYARTGGGNRDSADL 614



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 84/248 (33%), Gaps = 10/248 (4%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            ++    + + V  +  V  + V +   + +      +        L   +    + +  
Sbjct: 235 DVEDVMSLPIKVRGDTVVTFADVATIRRTFKDPTGFARIDGQPALALEIKKRSGANIIET 294

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              +  +  ++    P S          +  + ++      VI + I ++I I       
Sbjct: 295 VAAVRELIDEMRTEWPDSITVKYTQDESEQVQSMLSDLEANVIAAVILVMIVIVWALGVR 354

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV---VYDRMRKNM 748
            AL     +       +    + G   NL  + +++ ++G  V+  +V   + DR     
Sbjct: 355 SALLVGLAIPGAFLAGVTALWVMGYTMNLVVLFSLILVVGMLVDGAIVTTELADR----- 409

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                  S R     +  + +   +  S A  +SV    ++    +G F   +   +++ 
Sbjct: 410 -RLQEGHSPRAAYAHA-AKRMSWPIIASTATTLSVFFPLLFWTGTVGEFMKFLPITVILT 467

Query: 809 ASSSIFIA 816
            ++S+F+A
Sbjct: 468 LTASLFMA 475



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 69/177 (38%), Gaps = 5/177 (2%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           ++  +V ++      V        ++  I  +     ++ +     +  +E +       
Sbjct: 801 DQERVVTVEANVAPGVLVNDQTVALRSAIDAMDLPPGVEASFAGEAEDQQESMIFLAGAF 860

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIG 731
           I +   M + + I+F  +Y A   ++ ++  I   L    + G  F +      V+ L G
Sbjct: 861 ITAIFLMFVILVIQFNTFYQAFVVMSAIVFSIAGVLFGLLVTGRPFGVVMGGIGVIALAG 920

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             VN+ +V+ D       L  T +S  +   ++  + L   V TS+   + ++PM +
Sbjct: 921 IVVNNNIVLIDTYND---LKKTGLSPLEAALRTGAQRLRPVVLTSVTTALGLMPMVI 974


>gi|83720314|ref|YP_442479.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis E264]
 gi|167619509|ref|ZP_02388140.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis Bt4]
 gi|257138687|ref|ZP_05586949.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis E264]
 gi|83654139|gb|ABC38202.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis E264]
          Length = 1048

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 77/590 (13%), Positives = 161/590 (27%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSKNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLDRSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISPTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++ ++                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEEVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTDPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGKRAISVGVYKKPGANTVETVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +I+ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISISLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L   G   G   R FA+T+ ++IL+S F ++++   M  +++R  +           F 
Sbjct: 450 PLLLMGGIIGRMFREFAVTLSMTILVSAFVSLTLTPMMASYLLRANRRDDGRAPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                +A  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARMAAAYERALDVALRHRFVTLCAFFASVAASVFLYVGIPKGFFPQQ 559



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALVVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +        + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATREQNMTSFDAIRSACLLRFRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++     I L++    ++  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLLTTPVIYLYLDTLSSRLK 1026



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +             K ++ET       S++    +LP+ + G   G +   FA+ +
Sbjct: 413 ---ARHVEAGERPLQAALKGLSETSFTIASISISLVAVLLPLLLMGGIIGRMFREFAVTL 469

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +  I+V+A  S+ +   +  ++     ++
Sbjct: 470 SMTILVSAFVSLTLTPMMASYLLRANRRD 498


>gi|27367258|ref|NP_762785.1| cobalt-zinc-cadmium resistance protein czcA/cation efflux system
           protein cusA [Vibrio vulnificus CMCP6]
 gi|27358827|gb|AAO07775.1| Cobalt-zinc-cadmium resistance protein czcA; Cation efflux system
           protein cusA [Vibrio vulnificus CMCP6]
          Length = 1042

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/644 (11%), Positives = 173/644 (26%), Gaps = 39/644 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++ N    + +D  P       I                  
Sbjct: 11  NNRFLVLIATLFLTLGGLYSVKN----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   E   +
Sbjct: 118 APKLPPNAKPTLGPDATGVGWIYSYV-LQDKTGKHDLAQLRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P         
Sbjct: 237 LSSVEDI------------------QSLPLKVTDKGTPLLLGDIADINIGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+      A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASQVIDNVKAKLADLQRSLPEGVEIVSTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V +V  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR   +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGNVLPEHKNPVNKGLVSLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    ++     + +++     +       G  +      G  + +    P       
Sbjct: 519 RPLLSLSLKYPKSMIVLALGLMASAYYPTSQLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L       I            +       D    T +  +++
Sbjct: 579 RELLQQTNKLIKTVPEVETVWGKIGRADTATDPAPLTMIETVIQ 622



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 82/284 (28%), Gaps = 20/284 (7%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S  Q     + ++                   +    L     V V I
Sbjct: 816  WVFVDIDGRDLGSYVQEAQSVVAEQLELPAGYSLAWSGQYEYMERAKERLS----VVVPI 871

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYS 733
            +   +++ ++  F+       I    L +    G       G  F++      + L G +
Sbjct: 872  TLAIIMLLLYFSFR-RVGEVLIIMATLPLAMVGGLWLMHYLGYNFSIAVGVGFIALAGVA 930

Query: 734  VNDKVVV---------YDRMR-KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++         Y ++  +  KL   +    D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHYKKLHAEENKLSLVAQDLTDAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +P+      G  V+   A PM  G+  A   ++ +   I     
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWK 1034



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 66/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           N+       IS  N +GE    V +     ++      ++     +   +P      +  
Sbjct: 266 NIGPQMRRGISEFNGEGEAVGGVIVMRFGENASQVIDNVKAKLADLQRSLPEGVEIVSTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + +      F    +L    +L + I          G
Sbjct: 326 DRSTLINAAVENLWKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|237747991|ref|ZP_04578471.1| drug efflux pump transmembrane protein [Oxalobacter formigenes
           OXCC13]
 gi|229379353|gb|EEO29444.1| drug efflux pump transmembrane protein [Oxalobacter formigenes
           OXCC13]
          Length = 1032

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 63/614 (10%), Positives = 160/614 (26%), Gaps = 49/614 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                ++    I   GL+           +   P                   +V     
Sbjct: 10  RPVATILFMVAILLSGLVA-----WRMLPVAALPEVDYPT-----------IQVVTYYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +     +        S     + +TL F+ S   +    +V   + 
Sbjct: 54  ASPEVVTSTITAPLERQFGQMPGLEQMSSSSSNGVSVVTLQFSLSLTLDVAEQEVQAAIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           G  + L  D     +        + +L+   +        +       +   ++      
Sbjct: 114 GATNLLPSDLPNPPIYNKVNPADTPILT-IAVTSPTLPMTKLEDLADTRLAQKLSQVPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  + +   L     T   +    V  N ++    F       +    
Sbjct: 173 GLVSISGGQRPAVRIQANSKALAAKGLTLENVRTAVVGANVNQAKGSFDGPLQASTIDGN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   E                      +I                 +          
Sbjct: 233 DQLKTATEF--------------------ANIIIAYRDGAPVRLSDVATVFDGAENARLA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +     +    +   L+          V          S  
Sbjct: 273 AWAGNTPSVILTVQRQPGANVISVADRIKEILPALQNSLPASVDVKVLSDRTTTIRASVE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   LV++V+F+ +      ++   ++ L+++ T  ++ +LG ++   ++  +
Sbjct: 333 DVEFELVLAIALVVMVVFVFLRNMTATIIPAVAVPLSLVGTFGVMYMLGFSINNLTLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I++ E I     +      +   G  +   TI    ++ +   + L F 
Sbjct: 393 TIATGFVVDDAIVMIENIARYIEEGDDPMEAALKGSRQIGFTIISLTVSLIAVLIPLLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSR 530
           G   G   R FA+T+ +SILIS   ++++   M   +        +    ++        
Sbjct: 453 GDVIGRLFREFAVTLAVSILISAVISLTLTPMMSARLLKHVPEENQNTFFRASGHFFDRV 512

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  +     R +   +       + ++  +      + +     IQ    A + + 
Sbjct: 513 IAEYAKWLNWVLDRQKLTLMVAVGTIVVTALLYIVIPKGFFPLQDTSVIQGVSEATQSIS 572

Query: 591 LSVVRSNLESLQIG 604
              +    E +   
Sbjct: 573 FDAMTRRQEQVADR 586



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 50/127 (39%), Gaps = 6/127 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +     + L +  T G   + G   N   + A+    G+ V+D +V+ + +    +    
Sbjct: 360 IIPAVAVPLSLVGTFGVMYMLGFSINNLTLMALTIATGFVVDDAIVMIENI---ARYIEE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
                +   K   +     +  +++    ++P+   G   G +   FA+ +A  I+++A 
Sbjct: 417 GDDPMEAALKGSRQIGFTIISLTVSLIAVLIPLLFMGDVIGRLFREFAVTLAVSILISAV 476

Query: 811 SSIFIAA 817
            S+ +  
Sbjct: 477 ISLTLTP 483



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 88/223 (39%), Gaps = 6/223 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +     + +      + +  ++ + +   E+   ++IQ          +  +   +  +
Sbjct: 801  GQFPTATVSFNLAKGASLSEAVDAIAETEMEMGMPASIQTQFQGAAMAFQSSLSSTLWLI 860

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + M I + I ++ +   +  ++TL       L    LFG + ++ A+  ++ LIG 
Sbjct: 861  LAAIVTMYIVLGILYESYIHPITILSTLPSAGIGALLALMLFGKDLSVIAIIGIILLIGI 920

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D     +      +S R+ I ++        + T+MAA +  LP+      
Sbjct: 921  VKKNAIMMID--FALVAEREQGMSPREAIYQACLLRFRPIMMTTMAALLGALPLMFAMGI 978

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G  +     I M  G++V+   ++F    I L+      +  R
Sbjct: 979  GSEIRNPLGITMVGGLLVSQVLTLFTTPVIYLYFDRLARRVER 1021


>gi|254425471|ref|ZP_05039188.1| RND transporter, HAE1/HME family, permease protein [Synechococcus
           sp. PCC 7335]
 gi|196187894|gb|EDX82859.1| RND transporter, HAE1/HME family, permease protein [Synechococcus
           sp. PCC 7335]
          Length = 929

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/516 (14%), Positives = 143/516 (27%), Gaps = 36/516 (6%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W      + C I L   L  F      +  P                            
Sbjct: 4   RWRHGTIVLFCLIALFGILALF--SLPSELRPGGDRPEVT---------IQTNYPGASPA 52

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V   +    +E+   ++       S    Q+ I+L FA           V   LQ  + 
Sbjct: 53  EVEDLITRPIEEVLEGVQGVQEMTSSSGNGQSSISLEFAWDVDINQAFVDVLSKLQQAD- 111

Query: 125 KLNVDPKKNLLVTTTEKEISIVLS--QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            L  +  ++ +   +    S +L       +   +               ++   E    
Sbjct: 112 DLPAEASESEVQIVSGDTDSPMLRIHLVPAEGATADLNHYRDLADDVIGPRLRHIEGIGD 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP  L         +       N   +G    V            
Sbjct: 172 LSIEGGQAREVEVIVDPRALADRNLAIDDVINTLRSSNRDIRGGPMVVGRREYRVRTVSR 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D  ++ G                  + +  D  G     +V    IG+    +   R 
Sbjct: 232 ANDVKQLEG------------------LILRRDTSGTVYLGDVAEAKIGRATPEMAFLRD 273

Query: 303 LTAPVINQAIPSGKAQISGN-FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               +   A+      +     +I  A                 I+          S S 
Sbjct: 274 GEPAITIGAVRQIGGNVPEISKSIRAALAEIEERFIQQGENVRFIIPYDENDYISQSISF 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + +  I A L   VL + +   +   V   +I   +I    + +LLG +L + S+AG+ 
Sbjct: 334 VQSSLIIGAVLAAFVLILFLGSLRTVAVIAITIPTTLISVFIVFALLGRSLNVISLAGLA 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
              G+ VD+ I+V E I    +K ++   +           +  S +T +   + +    
Sbjct: 394 FASGMIVDNAIVVLENIFTHIQKGKTTVQAAVDATQEVSGAMLASTLTNVAVFMPIVLVE 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G       I +  S+L S+F A+++V  +    
Sbjct: 454 GEAGQLFFDLGIALSASVLFSLFAALTLVPMLSGLF 489



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 79/246 (32%), Gaps = 10/246 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V      +  + R+  E   + D       G    +     +   S+         +  
Sbjct: 250 TVYLGDVAEAKIGRATPEMAFLRDGEPAITIGAVRQIGGNVPEISKSIRAALAEIEERFI 309

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIV--GVIISAIAMLIYIWIRFKWYFALGAITT 699
                    I   E      S   ++  ++   V+ + + +L    +R     A+ AI T
Sbjct: 310 QQGENVRFIIPYDENDYISQSISFVQSSLIIGAVLAAFVLILFLGSLR---TVAVIAI-T 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +   +      FAL G   N+ ++A +    G  V++ +VV + +           +   
Sbjct: 366 IPTTLISVFIVFALLGRSLNVISLAGLAFASGMIVDNAIVVLENI---FTHIQKGKTTVQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               +  E  G  + +++      +P+ +  G     F   +   +  +   S+F A  +
Sbjct: 423 AAVDATQEVSGAMLASTLTNVAVFMPIVLVEGEAGQLF-FDLGIALSASVLFSLFAALTL 481

Query: 820 LLFIYD 825
           +  +  
Sbjct: 482 VPMLSG 487


>gi|120610719|ref|YP_970397.1| acriflavin resistance protein [Acidovorax citrulli AAC00-1]
 gi|120589183|gb|ABM32623.1| acriflavin resistance protein [Acidovorax citrulli AAC00-1]
          Length = 1070

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/515 (11%), Positives = 141/515 (27%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+L   +   G+       +       +P+                    L    
Sbjct: 10  RPVATVLLTIGMALAGIAAFFLLPVAPLPQVDYPAIS--------------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I+L F  +R  ++ A +V   +   
Sbjct: 56  PETMATSVATPLERRLGVIAGVNEMTSSSSSGSARISLQFDLNRKIDSAAREVQAAINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N          S V+    +        E    +      +I   E    
Sbjct: 116 RADLPATLRSNPTYRKINPADSPVII-LALTSRSRTPGEIYDAVSNVVSQRISQVEGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E  P  L +    +  +                              
Sbjct: 175 VEIGGGSLPAVRVELLPFALNRYGIGSEDVRAAIQA--------------------ANAN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  S             +      D+                 +   +       +
Sbjct: 215 RPKGAIESDGRRMQIYTPSPSRRAADYADLVIAWRDGAPVRLGDVAQVIDGVENTRTLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    + + +   +   T++    L   L+A         V   +  +   S    
Sbjct: 275 FNGEPAIVVLITRQPGANIIRTVDGVRALIPSLQAQLPQDIRIAVASDSTNSIRASLREI 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +   LV++V+ + +   +  ++   +  ++++ T  ++ LLG +L   S+  + +
Sbjct: 335 EITLMVSIALVVLVVGLFLRKARATVIPAVATVVSLLGTFGIMYLLGFSLNNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E              +   G      T+   +++ +   + L F  G
Sbjct: 395 ATGFVVDDAIVVLENTSRHIEAGMDRMAAALQGAREVGFTVLSISLSLVAVFIPLLFMDG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                 R FA+T+ +++ IS+  +++    M  ++
Sbjct: 455 QVGRLFREFAVTLSVAVAISLVISLTTTPMMCAWL 489



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 48/141 (34%), Gaps = 7/141 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              +      ++ +  T G   L G   N  ++ A+    G+ V+D +VV +      + 
Sbjct: 357 RATVIPAVATVVSLLGTFGIMYLLGFSLNNLSLMALTVATGFVVDDAIVVLEN---TSRH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               +       +   E     +  S++     +P+    G V      FA+ ++  + +
Sbjct: 414 IEAGMDRMAAALQGAREVGFTVLSISLSLVAVFIPLLFMDGQVGRLFREFAVTLSVAVAI 473

Query: 808 AASSSIFIAAPILLFIYDWRA 828
           +   S+    P++        
Sbjct: 474 SLVISL-TTTPMMCAWLLRSE 493



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/248 (9%), Positives = 86/248 (34%), Gaps = 6/248 (2%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                +  V  S +  +            +      + +    + + ++  ++V++   +I
Sbjct: 803  ANTQESMVPLSAIAKVAERSSPTSISHQDGELATTISFNLEGNTSLSQARQIVEQAEADI 862

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
               + ++ +     +  ++   +    ++ + + + I + + ++     +  +TTL    
Sbjct: 863  AMPTNVRGSFEGTARSFQQTQGQQFFLILAAIVVIYIVLGVLYESLIHPITVLTTLPSAG 922

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
               +    LF ++F + A+  V  LIG    + +++ D   +        +S    + ++
Sbjct: 923  VGAVLALLLFNMQFTIIALIGVFLLIGIVKKNAILIIDFALE--AERARGLSATQAVREA 980

Query: 765  INETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + T+       + +      G  +     + +  G++ +   ++     + +
Sbjct: 981  CMLRLRPILMTTLAAALGALPLAVGFGQGSELRQPLGVAIIGGLIASQLLTLLTTPVVYV 1040

Query: 822  FIYDWRAK 829
             +   R  
Sbjct: 1041 LLDRLRRP 1048


>gi|294501730|ref|YP_003565430.1| acriflavin resistance efflux permease [Bacillus megaterium QM
           B1551]
 gi|294351667|gb|ADE71996.1| acriflavin resistance efflux permease [Bacillus megaterium QM
           B1551]
          Length = 1036

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/692 (10%), Positives = 184/692 (26%), Gaps = 46/692 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L   +   GL            L+  P                        
Sbjct: 9   LKNKFAVWLLTLFVIIAGLYSGF-----NMKLETIPDISTPVVT---------VTATYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++    L        S  +    I + ++ S+  E   D+V   L 
Sbjct: 55  ATPEQVADKVSKPIEQKLQGLSGVETVSSSSYENMATIQVEYSFSKDMEKAEDEVRRALS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  D ++  +   +  +  I+    ++        E +  +    + Q+   +  
Sbjct: 115 NV--DLPDDVEEPNVSRQSISDFPII--SLSVSDDKKSLEELTKYVKNTVVPQVEKVQGI 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S   + +        +L+QL      +       +       + +   + S    
Sbjct: 171 SSVSVSGEQVEEAELVFKQDKLKQLGLDEDTVKKLIQASDAKVPAGTYTMDGSQKSVVVD 230

Query: 241 YLVEDKVEISGIHL--------NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
             +  + ++  + +                 +              +    ++      K
Sbjct: 231 GKMTAEKDLENLEIPAVPSQGAAQDQQQGMSQQQTQGAVQQAPSAASIPTVKLKEIADIK 290

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                                      +    +         L   +  + +        
Sbjct: 291 VTGKAESISRTNGKPSIAVQVVKAKDANTVNVVNDIKEKMNSLEKKNKDLHV-DNIFDQG 349

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S         I A   +I++ + +   +  ++A  SI L++++ +  L  +  +L
Sbjct: 350 KPIEDSVHTMLNKAIIGAVFAVIIILLFLRDIRSTIIAVISIPLSLLIAILALKSMDISL 409

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ---SVFCSLDMGFSRAYSTIFDSNIT 469
            + ++  + + IG  VD +I+V E I       +        +       +  IF S I 
Sbjct: 410 NIMTLGAMTVAIGRVVDDSIVVIENIYRRMAYQEEKLKGKDLIVAATKEMFVPIFSSTIV 469

Query: 470 ALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------ 520
            +   + L    G        FA+T+  ++L S+  A+++V  +   + +          
Sbjct: 470 TVAVFLPLGLVEGPVGELFLPFALTVVFALLASLLVAVTLVPMLAHSLFKTNVKVKEEKP 529

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
             +            +   I F  A    VG   L     +  L +              
Sbjct: 530 SKLAHGYKRILNWTLNHKLISFGLAVLLLVGSLFLVPSIGVSFLSSDQEKTLTLTYTPKA 589

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFD-------GEKNFLVRLQYQPGDSVAQTR 633
               ++     +   + L           +F        G KN ++       D+    +
Sbjct: 590 GQSQSDVEKAANRAEAYLMKRDGVKTVQYSFGEGNSFNPGSKNNVLTFVQYDEDTQNFDK 649

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
             + V K + +        +        +  L
Sbjct: 650 EQDKVLKALNKQANQGEWGSMNTASSGSNNSL 681



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 91/248 (36%), Gaps = 10/248 (4%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            ++++     +   +        +  ++ +  ++V     ++     + +      + N 
Sbjct: 286 IADIKVTGKAESISRTNGKPSIAVQVVKAKDANTVNVVNDIKEKMNSLEKKNKDLHVDNI 345

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
              G  I   +       +I +  A++I +         + A+ ++ L +   +      
Sbjct: 346 FDQGKPIEDSVHTMLNKAIIGAVFAVIIILLFLRDIRSTIIAVISIPLSLLIAILALKSM 405

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  V+D +VV + + + M      +  +DLI  +  E       
Sbjct: 406 DISLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMAYQEEKLKGKDLIVAATKEMFVPIFS 465

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI---------YD 825
           +++      LP+ +  G V   F +P A  +V A  +S+ +A  ++  +           
Sbjct: 466 STIVTVAVFLPLGLVEGPVGELF-LPFALTVVFALLASLLVAVTLVPMLAHSLFKTNVKV 524

Query: 826 WRAKNARI 833
              K +++
Sbjct: 525 KEEKPSKL 532



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/268 (14%), Positives = 92/268 (34%), Gaps = 7/268 (2%)

Query: 554  ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            +         +  +      DF    +L            V  N         +      
Sbjct: 756  LTTIQKDGNEINVYLPKEKEDFSTFAELSSTKVTSQTGQEVTLNEVVDIKKGKTSNTVTR 815

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              N +         S     V   V+K++ +I   S +        +   +   +  + +
Sbjct: 816  RDNKIYAEVSADIKSDDVGGVSSNVQKEVKKIDLPSDMDINFGGASEQINDSFSQLGIAM 875

Query: 674  IISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + +   +   + + F    A  AI  +L   +   L    + G   +++++   L LIG 
Sbjct: 876  LAAIGIVYFVLVLTFGGGLAPFAILFSLPFTLIGALVALLISGETISISSMIGALMLIGI 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--G 790
             V + +V+ DR+   +      +S R+ + ++    L   + T++A   ++LP+A    G
Sbjct: 936  VVTNAIVLIDRV---IHKEQEGLSTREALLEAGMTRLRPILMTAIATIGALLPLAFGFEG 992

Query: 791  GSVI-GSFAIPMAFGIVVAASSSIFIAA 817
            G +I     + +  G+  +   ++ I  
Sbjct: 993  GGLISKGLGVTVIGGLTSSTLLTLIIVP 1020


>gi|222111359|ref|YP_002553623.1| CzcA family heavy metal efflux pump [Acidovorax ebreus TPSY]
 gi|330825935|ref|YP_004389238.1| CzcA family heavy metal efflux pump [Alicycliphilus denitrificans
           K601]
 gi|221730803|gb|ACM33623.1| heavy metal efflux pump, CzcA family [Acidovorax ebreus TPSY]
 gi|329311307|gb|AEB85722.1| heavy metal efflux pump, CzcA family [Alicycliphilus denitrificans
           K601]
          Length = 1043

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 88/677 (12%), Positives = 197/677 (29%), Gaps = 46/677 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV+L ++    G + A+     ++ LD  P       I          +       
Sbjct: 11  NNRFLVLLATLFVIAGGVFAVL----RTPLDALPDLSDVQVI---------VYTEYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          + K  +         + + + F D         +V  +L   
Sbjct: 58  PQVVEDQVTYPLTTSMLSVPKSKVVRGFSYFGASFVYIIFEDGTDIYWARSRVLEYLNFA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S++       +    T        +    D+ ++         +R    Q+  +    +
Sbjct: 118 SSRMPKGVTPQIGPDATGVGWVYQYALLAKDKTLAELRTLQDWYLRY---QLTKAHGVAE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  +       DP +LR      AK+S      N    G +  +         +  
Sbjct: 175 VASIGGFVQTYQVTVDPVKLRAYGIPLAKVSQVIRDSNRDVGGRVVEMAETEYMVRGKGY 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I  + +               V+I+ DE           +              
Sbjct: 235 LRGVADIENLVVKAEKGTPVLIRDIARVEIAPDERRGLTELNGEGE-------------- 280

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    I       A +  G                   +    
Sbjct: 281 -----VVSGIAMARYGQNALEVIHNLKEKIAEVSTGLPEGVTIEAVYDRSDLIHRAIDTL 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T    + +V +V  + +++ +  LVA   + + V+++   + +LG    L S+ GI +
Sbjct: 336 KRTLLEESVIVALVCMVFLMHMRSALVAILMLPVGVLISFIAMRMLGMNSNLMSLGGIAI 395

Query: 423 GIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IG  VD+ I++ E   +           +    ++          +F S +   ++ + 
Sbjct: 396 AIGAMVDAAIVMIENAHKHLERLPPEHDGKQRAQAMLTACKEVGPALFFSLLIITVSFLP 455

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   S+  +   ++++V  +M+  IR + M           FL
Sbjct: 456 VFTLESQEGRMFSPLAFTKTFSMAGAALLSVTLVPVLMMIFIRGRIMPE--SRNPVNRFL 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
           I     I     R+  V I+I   +  +       L             +     +    
Sbjct: 514 IWAYRPIIAAVMRWKKVTIAIALIVLGVSFYPASKLGSEFMPTLNEGTLLYMPASLPGMS 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +    E LQ  +   ++F   ++   +       +      +      +       +   
Sbjct: 574 ITKAAELLQTQNKIIKSFPEVESVYGKAGRANTATDPAPTEMFETVINLKPESAWRSGMT 633

Query: 654 TEIVGPKISRELIRKGI 670
           T+ +  ++ + L   G+
Sbjct: 634 TDKLIAEMDKALQFPGV 650



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 60/162 (37%), Gaps = 10/162 (6%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            VI++ + M+  + +R     AL AI  L + +  +     + G+  NL ++  +   IG
Sbjct: 343 SVIVALVCMVFLMHMR----SALVAILMLPVGVLISFIAMRMLGMNSNLMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMR---KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             V+  +V+ +      + +            +  +  E      ++ +   +S LP+  
Sbjct: 399 AMVDAAIVMIENAHKHLERLPPEHDGKQRAQAMLTACKEVGPALFFSLLIITVSFLPVFT 458

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                   F   A    F +  AA  S+ +   +++     R
Sbjct: 459 LESQEGRMFSPLAFTKTFSMAGAALLSVTLVPVLMMIFIRGR 500



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 52/159 (32%), Gaps = 13/159 (8%)

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----- 741
              +    L  + ++   +   +      G   ++      + L G +    VV+      
Sbjct: 884  FRRLTETLIVMLSVPFALVGGVWLMWWLGYNLSVAVAVGFIALAGVAAETGVVMLIYLDH 943

Query: 742  --DRMRKNMKLYTTS---ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
              + +++  +            + + +   E +   + T +A    +LP+      G  V
Sbjct: 944  AWEEIKEKRRTEGKEPGVADLYEAVMEGAVERVRPKMMTVVAIMAGLLPIMWGTGTGSEV 1003

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +   A PM  G++ +   ++ +   +   +     +  R
Sbjct: 1004 MSRIAAPMVGGMISSTVLTLAVIPALYALVKQVELRRRR 1042


>gi|121535015|ref|ZP_01666833.1| heavy metal efflux pump, CzcA family [Thermosinus carboxydivorans
           Nor1]
 gi|121306428|gb|EAX47352.1| heavy metal efflux pump, CzcA family [Thermosinus carboxydivorans
           Nor1]
          Length = 1057

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 78/671 (11%), Positives = 176/671 (26%), Gaps = 43/671 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   +V+L       G        L    +D FP  + +N++ +  D  G        
Sbjct: 10  LHNRVIIVVLTVFTILWGGFA-----LKDMPIDAFPD-LSENQVLVMSDWMG-------- 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    +     L        S     + IT+ F D          V   +Q
Sbjct: 56  RGPQEVQDQVTYPLETALRGLPNVKQVRSSSSFGLSMITVIFEDGVDTYFARQVVAEKIQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L    +  L   +T      + +  +      +  E           Q+      
Sbjct: 116 QAIPRLPRGVQPTLGPVSTPMGQVFMYTVESD---RHNLAELRTIQEFFIKPQLSAVPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +       ++Q     DP  L+      +++                          N 
Sbjct: 173 AEVPSIGGYVLQYQVNLDPDLLKAYKVGVSQVYGAISA--------------------NN 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +  KV                ++   + +I   +      +      +          
Sbjct: 213 ANIGAKVVEQNGQEYVIRGLGLVQSVDDINNIVITQNNNIPVYVKDVARVTIGPDFRRGV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      I   ++  +    I  A    A ++    P    +           + +
Sbjct: 273 LTKFGNEAAGGIVVMRSGENALEVIARAKAKIAEIQPTLPPGMKIVPYYDQTELVQKAVN 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      LV I++F+ +   +  ++   +I + +++   L+  +  +  L S+ GI
Sbjct: 333 TLTRALVEEFLLVSIIVFLFLGNFRSSIIVTSAIPIGILIAFILMKQIHLSANLMSLGGI 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLD---MGFSRAYSTIFDSNITALIATVVL 477
            +GIG+  D+ I++ E +     ++      +D            IF S    ++  + +
Sbjct: 393 AIGIGVMTDAAIVMVENVYRHLAEDGGKHSIIDVTLEAAKEVAGPIFFSITIIIVTFLPV 452

Query: 478 FFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G      A T   ++  S+  A ++V  +   ++R K  +           + 
Sbjct: 453 FTMTGTEGKLYTPMAWTKTFAMSGSLLLAFTLVPVLCTILLRGKIKEEETWVVRKLHHVY 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +                +       L F          +G   +       V L+  
Sbjct: 513 LPILKTALKFRTATIAAALAIMIAGFALLPFLGTSFMPALDEGTFLVMPTMLPSVSLTEA 572

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
               + +    +     +     + R       +        +  K   +  P  T  + 
Sbjct: 573 VDAAKKMDKIIMEIPEVEMSVGKVGRADTALDPAPINMIETIVTLKPKEQWRPGITKADI 632

Query: 655 EIVGPKISREL 665
           E         L
Sbjct: 633 EQELMGKLSSL 643



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 71/217 (32%), Gaps = 8/217 (3%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            G    +++L  +  D V+       V K+  E+ P    +       +   +     ++ 
Sbjct: 835  GIYRVIIQLNVRDRDIVSFVDEASKVIKEKVELPPGYYYKWAGQYENQQRAKDRLALVIP 894

Query: 673  VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             +I     L+Y+        AL  +  +   +   +    L      +      + L G 
Sbjct: 895  AVILLTFFLLYMSFN-SVGDALLIMLNVPFSLVGGIVAIYLTDTYITVAVAVGFIALFGI 953

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +V + V++ D +              + + +   +     + T++ A + + P+      
Sbjct: 954  AVQNGVIMVDHI----NRLLKDRPLEEAVQQGALDRFRPVMMTALVASLGLFPLIFSTGT 1009

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G  +    A+ +  G+V +   ++ +   I       
Sbjct: 1010 GSEIQRPMALVVVGGLVTSTILTLVVLPSIYYVWKGR 1046



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 87/254 (34%), Gaps = 2/254 (0%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
             +D    I +    N PV +  V                F  E    + +     +++ 
Sbjct: 236 QSVDDINNIVITQNNNIPVYVKDVARVTIGPDFRRGVLTKFGNEAAGGIVVMRSGENALE 295

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
                +    +I   +P            ++ ++ +      ++   + + I +++    
Sbjct: 296 VIARAKAKIAEIQPTLPPGMKIVPYYDQTELVQKAVNTLTRALVEEFLLVSIIVFLFLGN 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +  ++   + + + I           +  NL ++  +   IG   +  +V+ + + +++ 
Sbjct: 356 FRSSIIVTSAIPIGILIAFILMKQIHLSANLMSLGGIAIGIGVMTDAAIVMVENVYRHLA 415

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                 S  D+  ++  E  G   ++     ++ LP+    G+       PMA+    A 
Sbjct: 416 EDGGKHSIIDVTLEAAKEVAGPIFFSITIIIVTFLPVFTMTGTEGK-LYTPMAWTKTFAM 474

Query: 810 SSSIFIAAPILLFI 823
           S S+ +A  ++  +
Sbjct: 475 SGSLLLAFTLVPVL 488


>gi|326317915|ref|YP_004235587.1| acriflavin resistance protein [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323374751|gb|ADX47020.1| acriflavin resistance protein [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 1070

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 60/515 (11%), Positives = 141/515 (27%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+L   I   G+       +       +P+                    L    
Sbjct: 10  RPVATVLLTIGIALAGIAAFFLLPVAPLPQVDYPAIS--------------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I+L F  +R  ++ A +V   +   
Sbjct: 56  PETMATSVATPLERRLGVIAGVNEMTSSSSSGSARISLQFDLNRKIDSAAREVQASINAS 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L    + N          S V+    +        E    +      +I   E    
Sbjct: 116 RADLPATLRSNPTYRKINPADSPVII-LALTSRSRTPGEIYDAVSNVVSQRISQVEGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E  P  L +    +  +                              
Sbjct: 175 VEIGGGSLPAVRVELLPFALNRYGIGSEDVRAAIQA--------------------ANAN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  S             +      D+                 +   +       +
Sbjct: 215 RPKGAIESDGRRMQIYTPSPSRRAADYADLVIAWRDGAPVRLGDVAQVIDGVENTRTLGL 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    + + +   +   T++    L   L+A         V   +  +   S    
Sbjct: 275 FNGEPAIVVLITRQPGANIIQTVDGVRALIPSLQAQLPQDIRIAVASDSTNSIRASLREI 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +   LV++V+ + +   +  ++   +  ++++ T  ++ LLG +L   S+  + +
Sbjct: 335 EVTLMVSIALVVLVVGLFLRKARATVIPAVATVVSLLGTFGIMYLLGFSLNNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G  VD  I+V E              +   G      T+   +++ +   + L F  G
Sbjct: 395 ATGFVVDDAIVVLENTSRHIEAGMDRMEAALQGAREVGFTVLSISLSLVAVFIPLLFMDG 454

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                 R FA+T+ +++ IS+  +++    M  ++
Sbjct: 455 QVGRLFREFAVTLSVAVAISLVISLTTTPMMCAWL 489



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 49/140 (35%), Gaps = 7/140 (5%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              +      ++ +  T G   L G   N  ++ A+    G+ V+D +VV +      + 
Sbjct: 357 RATVIPAVATVVSLLGTFGIMYLLGFSLNNLSLMALTVATGFVVDDAIVVLEN---TSRH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               +   +   +   E     +  S++     +P+    G V      FA+ ++  + +
Sbjct: 414 IEAGMDRMEAALQGAREVGFTVLSISLSLVAVFIPLLFMDGQVGRLFREFAVTLSVAVAI 473

Query: 808 AASSSIFIAAPILLFIYDWR 827
           +   S+    P++       
Sbjct: 474 SLVISL-TTTPMMCAWLLRS 492



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/248 (8%), Positives = 82/248 (33%), Gaps = 6/248 (2%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                +  V  S +  +            +      + +    + +     +++ +   +I
Sbjct: 803  ANTQESMVPLSAIAKVVERSSPTSISHQDGELATTISFNLDGNTSLGEARQIIAQAEADI 862

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI 704
               + ++ +     +  ++   +    ++ + + + I + I ++     +  +TTL    
Sbjct: 863  AMPTNVRGSFEGTARSFQQTQGQQFFLILAAIVVIYIVLGILYESLIHPVTVLTTLPSAG 922

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
               +    LF ++F + A+  V  LIG    + +++ D   +        +S    + ++
Sbjct: 923  VGAVLALLLFNMQFTIIALIGVFLLIGIVKKNAILIIDFALE--AERARGLSATQAVREA 980

Query: 765  INETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                    + T+       + +      G  +     + +  G++ +   ++     + +
Sbjct: 981  CMLRFRPILMTTLAAALGALPLAIGFGQGSELRQPLGVAIIGGLIASQLLTLLTTPVVYV 1040

Query: 822  FIYDWRAK 829
             +   R  
Sbjct: 1041 LLDRLRRP 1048



 Score = 43.1 bits (99), Expect = 0.20,   Method: Composition-based stats.
 Identities = 47/519 (9%), Positives = 140/519 (26%), Gaps = 18/519 (3%)

Query: 12   SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
             ++  + ++              FP    ++   L   LR    +         + G L+
Sbjct: 538  VIVILLAVIGLNVYLFSHIPKGFFPQ---QDNGQLVAGLRADQSI-----SSGALAGKLR 589

Query: 72   MYSDELRS--FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG---VNSKL 126
               D +R    +          R     + ++      + + +  V   L+      + L
Sbjct: 590  QAVDIIRKDPAVDTVVGFSGGGRAGGGFMFVNLKPVSERSDPSMAVVGRLRPQLAALTGL 649

Query: 127  NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             V       +    +  +           ++     + ++  +   +  +++    +  +
Sbjct: 650  QVFLSPVQDLRMGGRSSNSTYQYTLKSDNLADMRVWATKLAERLKQETLLTDVDTDQADN 709

Query: 187  HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                         +RL         + ++     +    +    ++    +         
Sbjct: 710  GSETYVEVDRDSAARLGVSAAAIDAVLYNAFGQRSVATIYSELNQYSVIMEWAPGYTRGP 769

Query: 247  VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
              +  I +    +        P    +          E           V        + 
Sbjct: 770  PALKDIFVPANPSGATGSPANPGQRGASTGQVLANTQESMVPLSAIAKVVERSSPTSISH 829

Query: 307  VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
               +   +    + GN ++  A  + A   A                         +   
Sbjct: 830  QDGELATTISFNLDGNTSLGEARQIIAQAEADIAMPTNVRGSFEGTARSFQQTQGQQFFL 889

Query: 367  AIVAGLVLIVLFMIVLYGKWGLVADFSI-FLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
             + A +V+ ++  I+       V   +      +  +  L L     T+ ++ G+ L IG
Sbjct: 890  ILAAIVVIYIVLGILYESLIHPVTVLTTLPSAGVGAVLALLLFNMQFTIIALIGVFLLIG 949

Query: 426  LAVDSNILVNER-IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL---FFFG 481
            +   + IL+ +  +  E  +  S   ++       +  I  + + A +  + L   F  G
Sbjct: 950  IVKKNAILIIDFALEAERARGLSATQAVREACMLRFRPILMTTLAAALGALPLAIGFGQG 1009

Query: 482  GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
                +   + +   ++ S    +     + + + R ++ 
Sbjct: 1010 SELRQPLGVAIIGGLIASQLLTLLTTPVVYVLLDRLRRP 1048


>gi|260893135|ref|YP_003239232.1| protein-export membrane protein SecD [Ammonifex degensii KC4]
 gi|260865276|gb|ACX52382.1| protein-export membrane protein SecD [Ammonifex degensii KC4]
          Length = 411

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 131/380 (34%), Positives = 232/380 (61%), Gaps = 26/380 (6%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +        +V   A++Q + I+++R+++ G++E  IQ+ G+ R++++LPG +DP  +
Sbjct: 52  VVLQAVDTPEAKVTPQAMKQVLAILQERVNRFGVTEPIIQQQGARRVIVELPGVKDPDEV 111

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
              L  TA + F                               +V ++G  L  A    D
Sbjct: 112 VNTLIRTAFLEF--------------------------KTESGEVIVTGRDLKEAREAID 145

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
           P T++PVV+++F+  GA +F + T +N+G+P+ + LDG+++  PV+   IP GKAQI+G 
Sbjct: 146 PATNQPVVNLTFNAEGAEKFKKATEENLGRPIGIYLDGKLIQNPVVKSVIPDGKAQITGY 205

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            ++E A  +A +L++G+LP+KL I+E+R VG  LG+DS++K   A   G+  I++FM++ 
Sbjct: 206 RSLEEAHRVAVLLQSGALPVKLEILEKRTVGPTLGADSLHKSLFAGAIGVAAILIFMLLY 265

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   GL+ADF + +  +L L +   L AT+TLP IAG +L  G+AVD+NIL++ERI+EE 
Sbjct: 266 YRVPGLIADFCLGIYALLVLLVFVALKATMTLPGIAGYLLSFGVAVDANILISERIKEEL 325

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R  +S+  ++D GF  A+  IFD+N+T ++  +VL++FG G +RGFA+T+ + ++ S  T
Sbjct: 326 RSGKSLRTAVDHGFKYAFRAIFDANVTTVLGALVLYYFGTGPIRGFALTLAVGVIASFLT 385

Query: 503 AISIVRAMMIFIIRYKKMKS 522
           A+++ R ++  ++    +K+
Sbjct: 386 AVTMTRWLLRLVLDTGLIKN 405



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 75/177 (42%), Gaps = 5/177 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + + K +    I   A+LI++ + ++    L A   L +     L  F      
Sbjct: 236 GPTLGADSLHKSLFAGAIGVAAILIFMLLYYRVP-GLIADFCLGIYALLVLLVFVALKAT 294

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  L   G +V+  +++ +R+++ ++   +  S R  +D             ++
Sbjct: 295 MTLPGIAGYLLSFGVAVDANILISERIKEELR---SGKSLRTAVDHGFKYAFRAIFDANV 351

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYDWRAKNARI 833
              +  L +  +G   I  FA+ +A G++ +  +++ +   +L L +     KN ++
Sbjct: 352 TTVLGALVLYYFGTGPIRGFALTLAVGVIASFLTAVTMTRWLLRLVLDTGLIKNPKL 408



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 58/145 (40%), Gaps = 15/145 (10%)

Query: 1   MRNNPWLVILYSM-ICCIGLLIALPNFLPQSMLDRFPSAMP-KNRISLGLDLRGGSHLVL 58
           MR N  L +L  + +  + +  A         +   P  +P    + LGLDL+GG H+VL
Sbjct: 1   MRWNKLLTLLAVVTVVGVAMWFAF-----LPPIKNIP-WLPVTKHVRLGLDLQGGVHVVL 54

Query: 59  E-VDEDD--FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADK 114
           + VD  +       ++     L+  + + G+    ++Q    ++ +     +  + + + 
Sbjct: 55  QAVDTPEAKVTPQAMKQVLAILQERVNRFGVTEPIIQQQGARRVIVELPGVKDPDEVVNT 114

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTT 139
           +   ++    +   +  + ++    
Sbjct: 115 L---IRTAFLEFKTESGEVIVTGRD 136


>gi|149188348|ref|ZP_01866642.1| putative RND efflux transporter [Vibrio shilonii AK1]
 gi|148837937|gb|EDL54880.1| putative RND efflux transporter [Vibrio shilonii AK1]
          Length = 1025

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/648 (10%), Positives = 176/648 (27%), Gaps = 47/648 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  + ++P                             V G++        +  +    
Sbjct: 29  FSELQVRQYPEIETGVIT---------VTTTYPGASSTSVQGYVTQPLQAQIAQAEGIDY 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                   ++ IT++       +    ++   +Q V  +L    +   ++ +T +   I+
Sbjct: 80  MTSESSLGKSLITVNLKLDYPTDKALTEILSLVQQVKYRLPAGTQDPSILKSTSQS-PIL 138

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
               + D       + S  + R         +   +     +    +    +P+++    
Sbjct: 139 YVSFSSD--RLATQQISDYVSRVVKPTFSTVDGVSKIDLLGQSDFAMRIWLNPTKMAAFS 196

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T A +       N+          ++                         A+ D  + 
Sbjct: 197 LTAADVQAAIQGSNSVSAAGKLKADYIE--------------------IDINAHTDASSV 236

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
               ++       +         +           +           S  +  +    ++
Sbjct: 237 DEFKNMVLKAANGQLIHLEDVATVELGANTYDSRVLFNGTSSITTAISNTSTSNPLTVVK 296

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
               +   ++          V   +      S      T    A +V+IV+   +   + 
Sbjct: 297 GLYDVLPAIKDSLPLGMKAEVVYDSTKFIDSSIEEVTKTLVEAAVIVIIVILAFLGSMRA 356

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            ++   +I L++I +L L+  +G ++ L ++  +VL I L VD  I+V E       +  
Sbjct: 357 MVIPLVTIPLSLIGSLFLMMSMGFSINLLTLLAMVLAISLVVDDAIVVVENTFRHLEEGA 416

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           +   +           +    IT       + F G   G     FA T+  S+LIS F A
Sbjct: 417 TPVQAAIESAREIAGPVIAMTITLAAVYAPIGFMGGLTGKLFTEFAFTLAGSVLISGFIA 476

Query: 504 ISIVRAMMIFIIRYK-----KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           +++   M   ++  +      +K ID           + +             +      
Sbjct: 477 LTLTPMMTSKMLNKQILEGAMVKKIDNVISGVTHHYENILTTVLNNRLLVWPLVLTFLVS 536

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS-------VVRSNLESLQIGDISFQNF 611
                  T       + +G + +        +          +   + S    ++S    
Sbjct: 537 LVFMFTHTASELAPQEDQGVVIMMGQGPSQANTDYLGNFTQALDKTISSYPETEMSMMVN 596

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
             +K+          D  ++   ++ +  +    +          + P
Sbjct: 597 GYQKDNKFFGLGVLKDWDSREASVKDIMTRFQNDIVDFPGLQVFTISP 644



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 6/224 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L +         N        +              + +++      +      +    
Sbjct: 261 ELGANTYDSRVLFNGTSSITTAISNTSTSNPLTVVKGLYDVLPAIKDSLPLGMKAEVVYD 320

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   +       V  + I +++ +         +  + T+ L +  +L      G 
Sbjct: 321 STKFIDSSIEEVTKTLVEAAVIVIIVILAFLGSMRAMVIPLVTIPLSLIGSLFLMMSMGF 380

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             NL  + A++  I   V+D +VV +      +      +      +S  E  G  +  +
Sbjct: 381 SINLLTLLAMVLAISLVVDDAIVVVEN---TFRHLEEGATPVQAAIESAREIAGPVIAMT 437

Query: 777 MAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
           +       P+   GG        FA  +A  ++++   ++ +  
Sbjct: 438 ITLAAVYAPIGFMGGLTGKLFTEFAFTLAGSVLISGFIALTLTP 481



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 78/234 (33%), Gaps = 8/234 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L +L     S Q    ++   +         +    + E  +        +         
Sbjct: 775  LSALIDIKQSVQPSAVDQFQQLNSATIEAKMMPGVSIGEAYEVMQEGAKQILPTSYATDS 834

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALF 714
              ++ + +     +    +   ++IY+ +      +   L  +T++ L I   +    L 
Sbjct: 835  SGQLRQYVQEGASLVSTFALALIIIYLVLAAQFESFKDPLIVLTSVPLSIFGAMIPLYLG 894

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                N+     ++TLIG      +++ +    N      +      + K+  E L   + 
Sbjct: 895  IDTLNIYTEVGLVTLIGLISKHGILIVE--FANQIQPEFAGDKIAAVKKAAAERLRPVLM 952

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+ A  I V+P+      G     S  + +  G+ V    ++F+   +  F+ D
Sbjct: 953  TTAAMVIGVVPLLTAAGAGAQSRFSIGLVITVGMTVGTLFTLFVVPTVYTFLAD 1006


>gi|88801759|ref|ZP_01117287.1| AcrB/AcrD family multidrug resistance protein [Polaribacter
           irgensii 23-P]
 gi|88782417|gb|EAR13594.1| AcrB/AcrD family multidrug resistance protein [Polaribacter
           irgensii 23-P]
          Length = 1003

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/464 (12%), Positives = 132/464 (28%), Gaps = 25/464 (5%)

Query: 60  VDEDDFVNGFL-QMYSDELRSFLKK-EGIGVFSMR---QIQNKITLSFADSRFKENIADK 114
                     + +     +   +   EG+   +         +IT+ F      +  A  
Sbjct: 3   AAYPGANAETVLESVIIPIEEQINGVEGMSYITSTASNTGTAEITVYFNQEMDADIAAVN 62

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           V   +   NS L  +  +N + T  ++  +++      +  +  A      +    I  I
Sbjct: 63  VQNRVSRANSLLPQEVLQNGVTTQKQETSALMFISMYSESDVYDATFIQNYLKINVIPAI 122

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                        +    +     P +L       + ++      N        G     
Sbjct: 123 QRIRGVGDVSVFSQQDYAMRIWLKPEKLAAYNLIPSDITAALKEQNLEAAAGSLG---QN 179

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             +   Y +                    +  +    +       +         I    
Sbjct: 180 SGEAFSYTLTYSGR-------------FKEVKQYGNIVIKALGNGQFLCLNDVAKIELDA 226

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                  +                 +    IE   I    +           V       
Sbjct: 227 QSYSSNAMSLGNPAVFMGIFQTKGSNAREIIENIKITLKSVEKDLPKGLNIFVPYDTSLF 286

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S      T      LV +V+F+ +   +  L+   ++ +++I T   L++ G ++ L
Sbjct: 287 LNASIDKVITTLVEAFILVFLVVFLFLQDFRSTLIPAIAVPVSIIGTFFFLNVFGYSINL 346

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIA 473
            ++  +VL IG+ VD  I+V E +  +  +  ++   +     +     I    +     
Sbjct: 347 LTLFALVLAIGIVVDDAIVVVEAVHAKMDEGEKNPKKATLTAMNEISGAIISITLVMAAV 406

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + + F  G        F +T+ ++ILIS   A+++  A+   +
Sbjct: 407 FIPVTFISGPTGVFYEQFGVTLIIAILISAVNALTLSPALCALL 450



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/319 (9%), Positives = 90/319 (28%), Gaps = 11/319 (3%)

Query: 514 IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
             +Y+   ++ +       +      +Q      +    S       + +         +
Sbjct: 679 YPQYEMKINVPLAKEKGVPINSIFSTLQGYIGGVYASDFSKFGKQFRVYIQSLPDDRADV 738

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                + +   +     ++             ++  N                   A + 
Sbjct: 739 GDLNNMYVRTNSGEMTPITQFVELERVYGPQSVTRFNLFNSATITGATNDNFSTGDAISV 798

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + +   K  +      +    E V         +   + ++       +       +   
Sbjct: 799 IEQEASKLPSNYTIAYSGLTREEVSAGN-----QTTFIFILSILFVYFLLSAQYESYLLP 853

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  + ++   +        LFG+E N+    A++ LIG    + +++ +     ++    
Sbjct: 854 LAVVFSIPFGVFGAYISTYLFGLENNIYFQIALIMLIGLLAKNAILIVEFA---VQRRKN 910

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
             S  +         L   + TS A  + ++P+ +    G +   S     A G+++   
Sbjct: 911 GESIVNAAIHGAKSRLRPILMTSFAFILGLMPLVLAKGVGAAGNKSIGTGAAGGMLIGTV 970

Query: 811 SSIFIAAPILLFIYDWRAK 829
             +FI   + +     + K
Sbjct: 971 LGVFIIPILFILFQWLQEK 989



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 91/247 (36%), Gaps = 6/247 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+ V       Q    +  +      F+   Q +  ++      +++  K + + +P   
Sbjct: 216 LNDVAKIELDAQSYSSNAMSLGNPAVFMGIFQTKGSNAREIIENIKITLKSVEKDLPKGL 275

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLG 709
                          I K I  ++ + I + + +++    +   L     + + I  T  
Sbjct: 276 NIFVPYDTSLFLNASIDKVITTLVEAFILVFLVVFLFLQDFRSTLIPAIAVPVSIIGTFF 335

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           F  +FG   NL  + A++  IG  V+D +VV + +   M       + +     ++NE  
Sbjct: 336 FLNVFGYSINLLTLFALVLAIGIVVDDAIVVVEAVHAKMDEGEK--NPKKATLTAMNEIS 393

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G  +  ++      +P+    G        F + +   I+++A +++ ++  +   +   
Sbjct: 394 GAIISITLVMAAVFIPVTFISGPTGVFYEQFGVTLIIAILISAVNALTLSPALCALLLKT 453

Query: 827 RAKNARI 833
             ++  +
Sbjct: 454 HKEDEDL 460


>gi|296282876|ref|ZP_06860874.1| RND family efflux transporter [Citromicrobium bathyomarinum JL354]
          Length = 1035

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/512 (12%), Positives = 147/512 (28%), Gaps = 44/512 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +L  +I   G+   +   + +      P                     L   
Sbjct: 5   KRPLLIGVLNLLIVIAGIAALIGVEVRELPNVDRPIVS--------------VTASLPGA 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  + +        S  +  ++I + F      +  A  V   +  
Sbjct: 51  APETMDAEVTSILEDAVARVSGVRQISSSSEENNSRIRVEFNPGVDLDTAATDVREAVSR 110

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    ++  +V   +    I+      D       E +  +    I ++  +E   
Sbjct: 111 TQRDLPERVEQVTVVKADQDAQPIMTLAVLSDA--YDQAELTRLVDNDIIPELLTAEGVA 168

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+    DP RL +   T   ++              F             
Sbjct: 169 SIEPFGARERQMRVAVDPLRLNRFGLTLTDVADALENAPFDVPVGSFRSDAQSLVVRADA 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +   I  + ++G                                  G   A   +  
Sbjct: 229 SATEPERIENVIVSGN------------------------VRIGDVAQAGFAPANASNFV 264

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    I       +A  +     ++       +           +   +      S   
Sbjct: 265 RLDGRPIIGLGVVRQASSNTIEISDSIRQAVERVNRRF-DDVEVQIVSDDAEFIRISVRE 323

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V+  + +     +  +V   +I + ++  +A + L+G ++ L ++  +V
Sbjct: 324 VLITLGFTILVVVATMLIFFRAWRPTMVPSTTIPVALVGVIAGIWLMGFSINLLTLLALV 383

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E  +    K      +  +G  + +  +  +    +   V + F  
Sbjct: 384 LATGLIVDDAIVVLENCQRLQNKGLGRRAAAVVGTRQVFFAVVATTAVLVSVFVPISFLP 443

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
              G   R F   + +++++S F A+S+V A+
Sbjct: 444 SETGRLFREFGFVLAVAVILSSFVALSLVPAL 475



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 59/154 (38%), Gaps = 7/154 (4%)

Query: 670 IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           ++ +  + + ++  + I F+ W   +   TT+ + +   +    L G   NL  + A++ 
Sbjct: 325 LITLGFTILVVVATMLIFFRAWRPTMVPSTTIPVALVGVIAGIWLMGFSINLLTLLALVL 384

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             G  V+D +VV +      +L    +  R        +     V T+       +P++ 
Sbjct: 385 ATGLIVDDAIVVLENC---QRLQNKGLGRRAAAVVGTRQVFFAVVATTAVLVSVFVPISF 441

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
                      F   +A  +++++  ++ +   +
Sbjct: 442 LPSETGRLFREFGFVLAVAVILSSFVALSLVPAL 475



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 65/162 (40%), Gaps = 7/162 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              +   + + +  +F+    AL  + T+   +   +    L G+  N+ +   ++ LIG 
Sbjct: 855  GFALAIVFLVLVAQFESLTSALVVLLTVPFALAAAVFALFLSGVSLNIYSQIGLVMLIGL 914

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + V++ +     ++      S R+ ++++    L     T ++  I  LP+ +    
Sbjct: 915  MAKNGVLIVE-FADQLRH--QGRSVREAVEEAAAIRLRPITMTLISTVIGALPLILASGA 971

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G     S    +  G+ +A+  ++F+   + L I  +    +
Sbjct: 972  GAEARQSIGWVIFGGLGIASIFTLFLTPVLYLAIARFGQPRS 1013


>gi|168204875|ref|ZP_02630880.1| protein-export membrane protein SecD [Clostridium perfringens E
           str. JGS1987]
 gi|168208642|ref|ZP_02634267.1| protein-export membrane protein SecD [Clostridium perfringens B
           str. ATCC 3626]
 gi|170663575|gb|EDT16258.1| protein-export membrane protein SecD [Clostridium perfringens E
           str. JGS1987]
 gi|170712983|gb|EDT25165.1| protein-export membrane protein SecD [Clostridium perfringens B
           str. ATCC 3626]
          Length = 419

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 32/170 (18%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E VG ++    +   +    I    + +++ + ++      A  +L + I   L  FA
Sbjct: 231 SVETVGAQLGANALPNALKAGAIGVAIIFLFMILYYRVP-GFIACMSLSVYILLVLYIFA 289

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G+   L  +AA L  +G +V+  V++++R+++ +       S    +    N  L   
Sbjct: 290 LVGVTLTLPGIAAFLLTVGMAVDANVLIFERIKEEL---GNGRSITSAMKIGFNNALRSI 346

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           + +++   I+ L +  +G   +  FA+ +  GIV++  ++I +    +  
Sbjct: 347 MDSNITTLIAGLVLYFFGSGPVKGFALTLLIGIVISMFTAIIMTRFFMNL 396



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 128/381 (33%), Positives = 216/381 (56%), Gaps = 26/381 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +   + V    +  + E++  R++++G+SE+ +   G++RI I +PG+ D   +   
Sbjct: 55  VLMEIQSNDVTVDQLNTTKELLSLRVNKVGVSETVVTTEGNNRIRIDIPGQYDSGTIVDS 114

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           L  T +++F                             ED V ++G  +  ++   DP+T
Sbjct: 115 LQKTGELTF--------------------------VGPEDDVILTGKDVEKSSVYIDPQT 148

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            KPV+ +  +E G ++F E T+   G+ +A+ +D   LT PV+N  I +G+A ISGN ++
Sbjct: 149 GKPVIKLELNEEGKQKFAEATKKYKGQKIAIKMDNETLTDPVVNDIISNGEAIISGNRSM 208

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  ++ ++ AG+LP+ +  V    VGA LG++++     A   G+ +I LFMI+ Y  
Sbjct: 209 EEAEKVSGIINAGALPVPVKAVSVETVGAQLGANALPNALKAGAIGVAIIFLFMILYYRV 268

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G +A  S+ + ++L L + +L+G TLTLP IA  +L +G+AVD+N+L+ ERI+EE    
Sbjct: 269 PGFIACMSLSVYILLVLYIFALVGVTLTLPGIAAFLLTVGMAVDANVLIFERIKEELGNG 328

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  ++ +GF+ A  +I DSNIT LIA +VL+FFG G V+GFA+T+ + I+ISMFTAI 
Sbjct: 329 RSITSAMKIGFNNALRSIMDSNITTLIAGLVLYFFGSGPVKGFALTLLIGIVISMFTAII 388

Query: 506 IVRAMMIFIIRYKKMKSIDIN 526
           + R  M        +    + 
Sbjct: 389 MTRFFMNLGFNMGILNKPSMF 409



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 2/142 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +     +   I    +            L  +        I+ GLDL+GG  +++E+
Sbjct: 1   MK-SKLGSFILFFISIAVISFLALAGFKGFTLGDYQFKTFNEVITKGLDLQGGVSVLMEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFL 119
             +D     L    + L   + K G+    +     N+I +          I D +    
Sbjct: 60  QSNDVTVDQLNTTKELLSLRVNKVGVSETVVTTEGNNRIRIDIPGQYDSGTIVDSLQKTG 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEK 141
           +        D            
Sbjct: 120 ELTFVGPEDDVILTGKDVEKSS 141


>gi|124514397|gb|EAY55910.1| acriflavin resistance protein [Leptospirillum rubarum]
          Length = 1070

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/673 (10%), Positives = 183/673 (27%), Gaps = 41/673 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +  +D FP+      I            +        V   +    ++  S +       
Sbjct: 31  RLPIDLFPNLAVPVLI---------VGTIYPGASPLDVERSVTYPLEKTLSTIDNVSHIQ 81

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
              R+  + I + F           +    +  + ++L    ++  ++      I +V  
Sbjct: 82  SQSREGVSAIQVWFNWGEDLNGGMVQAVQKISQILNQLPPGIQQPFILKFDIANIPVV-- 139

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
              +     + I+           Q+    +  Q   +   + Q+    DP RL     +
Sbjct: 140 SVTVSDPSLNQIQLYDLAYNTIEPQLEQLANVSQATVNGGKVRQININVDPHRLFARNLS 199

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
             ++       N  +      +     +      +   +  +  ++             P
Sbjct: 200 IMQVVNAINQSNFIQPSGDIKIGTKDYNLFTNNQIAHHLVDTLENV-------------P 246

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           V      +  A   F      +        +   +          + +   +    ++  
Sbjct: 247 VSVQQTPDGRAVPIFVKDFARVTDSAETQTNIVRVNGENAVYLAVNKQPGSNTVKVVDEV 306

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                 LR     ++LN            S           + L ++V+ +        L
Sbjct: 307 RQALPKLRGLPPGVRLNTF-FDQSLYIRQSIKSLFHEVLQGSVLAILVILLFFGNIPATL 365

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   +I L+ ++ +  L     TL + +  G+ LGIG  VD +I+  E I      + + 
Sbjct: 366 IISTAIPLSALVAMVFLYFTHQTLNIFTFGGLALGIGRLVDDSIVELENIYRHFSVDATP 425

Query: 449 F-CSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAI 504
              +L          I  S IT ++  + + F    G       A+T+  ++  S F + 
Sbjct: 426 RPRALLAAAREVAMPILASTITTVVVFLPVVFMQGIGRLLFTPMALTITFALFASFFVSR 485

Query: 505 SIVRAMM---------IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
           ++   +            + R                   + +       R   + + + 
Sbjct: 486 TVTPLLCYRFLHPSRTPLMDRQGPFAWFQRAFQRVEVFYENLLNYAIHHRRKIFLTVLLT 545

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
           F +    + F     +    +    + + A     + +     + +   +   +     +
Sbjct: 546 FLLSLPLVRFIGTEFFPAPDESQFTINIQAPPGTRIELTTELAKEI---EHVIRKTLPPR 602

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
           +  +        + A                P +      +V P    E   + +  V  
Sbjct: 603 DVRLIASNIGLRNTAGRGTNGAASVFTNNTGPDTAFVQVNLVDPDQRTESSDELMNRVRT 662

Query: 676 SAIAMLIYIWIRF 688
           +   M   + I F
Sbjct: 663 AMKGMFPGVGIYF 675



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/151 (18%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +Y+ +             + ++ +     +  F L G  F+  A   V+  +G + ++ V
Sbjct: 899  VYMVLATQFRSLIDPFVIMFSVPMSFIGVIWLFFLTGTSFSTIAFMGVIMTVGIAASNGV 958

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ D    N       +S  + + K+    L   V TS+A    ++PMA+    G S   
Sbjct: 959  LLVD--YSNRLQREQGLSLEEAVVKAGRTRLRPVVMTSLATIFGLIPMALGFDVGSSNSL 1016

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              A  +  G+  A   ++ +   I L ++  
Sbjct: 1017 PLARAVIGGLTCATLFTLVLVPTIYLSLHRR 1047



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 75/278 (26%), Gaps = 10/278 (3%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
                                       + +    +       V+         +     
Sbjct: 219 IKIGTKDYNLFTNNQIAHHLVDTLENVPVSVQQTPDGRAVPIFVKDFARVTDSAETQTNI 278

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                   V L           +V++ V++ + ++  L                 IR+ I
Sbjct: 279 VRVNGENAVYLAVNKQPGSNTVKVVDEVRQALPKLRGLPPGVRLNTFFD--QSLYIRQSI 336

Query: 671 VGVI-----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             +       S +A+L+ +         L   T + L     + F        N+     
Sbjct: 337 KSLFHEVLQGSVLAILVILLFFGNIPATLIISTAIPLSALVAMVFLYFTHQTLNIFTFGG 396

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   IG  V+D +V  + +         +      +  +  E     + +++   +  LP
Sbjct: 397 LALGIGRLVDDSIVELENI--YRHFSVDATPRPRALLAAAREVAMPILASTITTVVVFLP 454

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +    G     F  PMA  I  A  +S F++  +   +
Sbjct: 455 VVFMQGIGRLLF-TPMALTITFALFASFFVSRTVTPLL 491


>gi|307823350|ref|ZP_07653579.1| acriflavin resistance protein [Methylobacter tundripaludum SV96]
 gi|307735335|gb|EFO06183.1| acriflavin resistance protein [Methylobacter tundripaludum SV96]
          Length = 1035

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 80/599 (13%), Positives = 168/599 (28%), Gaps = 29/599 (4%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            L   +C  G   AL           FP       + L         +   V   + +  
Sbjct: 19  FLCVALCLAGAYAAL-----GMPSSIFPQTNFPRVVIL---------IDNGVMPANEMMA 64

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    +E    +           +   +I + F            V   L  V   L  
Sbjct: 65  TITRPVEEAMKDIPGVRTVRSKTGRGSAEINVFFTWQTDMVQAELFVQGRLAVVQKTLPA 124

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                 +   T     +V    ++        E           ++       +      
Sbjct: 125 TASS-AVWRLTFAAFPVV--GLSLTGPAHSLTELWETARYTIGPRLLRIPGVARTGIVGG 181

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
              +     DP RL+ +  + A+++   V  N      M    +          V    +
Sbjct: 182 RAPEYHVIVDPLRLQAVNLSLAQVTDALVRNNLIAPTGMLEEDYKLYLTVVDGRVHTVED 241

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           I  + ++           + V        GA          + +      +         
Sbjct: 242 IQNLTVSVTGNTPIAGAAQAV------ASGAHPIRIKDFARVERSQEPAFNIVTANGVNA 295

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                  +   S     +        L+    P     V          S         +
Sbjct: 296 VLLNVYSQPDGSTLDIAKQLKQELESLKKALPPGMQASVFYDQSLLVGDSIRSVWEAILL 355

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              L +I+L++ +      L+A   I   V++TL +L ++G    L ++ GI   IGL +
Sbjct: 356 GLILSVIILYVFLKNWGATLIAAMVIPATVLITLLMLRIMGLGFNLMTLGGIAAAIGLII 415

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AV 485
           D  I+V E +  +    +    ++    +  +  +  S +T ++  + L F  G      
Sbjct: 416 DDAIVVVEAVHTKITAGEQRLAAVQQALTDIFRPLLASTLTPVVVFIPLAFLDGVAGCFF 475

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           R  A+TM +S+L S+  A++++ ++ ++ +   +             LI +   +     
Sbjct: 476 RALALTMVVSLLTSLVLAVTLIPSLAVWWMPTDRQSPSSAKANWLERLIQNYEKVLRTAL 535

Query: 546 RF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
           +       G  ++ ++                 +GG  L   A     L+     L   
Sbjct: 536 KQAGKVLTGCVLILALGVWLYGRLESEFLPFMDEGGFVLDYRAPWGTSLAETDRQLRQA 594



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 95/283 (33%), Gaps = 7/283 (2%)

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            + +   +             T  +       G  Q       P+ +        S +  
Sbjct: 225 YKLYLTVVDGRVHTVEDIQNLTVSVTGNTPIAGAAQAVASGAHPIRIKDFARVERSQEPA 284

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                        L       G ++   + L+   + + + +P     +       +  +
Sbjct: 285 FNIVTANGVNAVLLNVYSQPDGSTLDIAKQLKQELESLKKALPPGMQASVFYDQSLLVGD 344

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
            IR     +++  I  +I +++  K W   L A   +   +  TL    + G+ FNL  +
Sbjct: 345 SIRSVWEAILLGLILSVIILYVFLKNWGATLIAAMVIPATVLITLLMLRIMGLGFNLMTL 404

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             +   IG  ++D +VV + +   +      ++    + +++ +     + +++   +  
Sbjct: 405 GGIAAAIGLIIDDAIVVVEAVHTKITAGEQRLA---AVQQALTDIFRPLLASTLTPVVVF 461

Query: 784 LPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +P+A   G       + A+ M   ++ +   ++ +   + ++ 
Sbjct: 462 IPLAFLDGVAGCFFRALALTMVVSLLTSLVLAVTLIPSLAVWW 504



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 82/217 (37%), Gaps = 8/217 (3%)

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             +       ++      +  +K K+     L           +  +E     ++ ++ S 
Sbjct: 818  QLVAVSARLENRDLGSAITEIKAKLGRDQTLPPGVLEFGGLYQQQQESFHNLLLVLLASI 877

Query: 678  IAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
              +   + + F  ++ A+  +   +L +  T+  + L G   N+ ++   +  IG    +
Sbjct: 878  FLVFTVLLVEFGSFYEAIAIVFGSVLALCGTVLAWYLTGTSVNIVSLLGAIIGIGVVAKN 937

Query: 737  KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
             +++ D +    +  +  ++  + + +S    L   + TS+AA + ++P+A     G  +
Sbjct: 938  GILMLDSVH---RFESQGVTLENALVESGRRRLRPVLMTSLAAALGLVPLAYGIGAGSDM 994

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +   AI    G +  +     +A P + F      K 
Sbjct: 995  LKPLAIA-VIGALTLSVLLSLVATPTVYFAMRRLGKK 1030


>gi|271965855|ref|YP_003340051.1| hypothetical protein Sros_4438 [Streptosporangium roseum DSM 43021]
 gi|270509030|gb|ACZ87308.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 1089

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/540 (10%), Positives = 155/540 (28%), Gaps = 46/540 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   ++++  ++   G                FP A       LG               
Sbjct: 11  NRSLVIMIAVVLSAFGAFAIPSLKQQLLPSLSFPGAFVVAP-YLG-------------AS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++    ++       + ++  +++ ++F      +    K+   +  +
Sbjct: 57  PEIVEEQVTKPIEDSFQGIEGVTEVTSTSQEGMSQVQVAFEYGTDIDAAVAKMQQAVARI 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L       +L   T+    +VL+              + ++ R  + ++   +   +
Sbjct: 117 GTQLPDGVDPQVLAGGTDDIPVLVLAVGTGGDER----AMADKLQRIVVPELQGIDGVRE 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    D  +L         ++                      +      
Sbjct: 173 ATVTGARDETVVITPDVKKLAARGLAPTAVTDALRANGQPVPAGSLVQDKASLTVQVGSR 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR--------------------- 281
           +    ++  ++L  A      +           + G +                      
Sbjct: 233 IASIEDLKNLYLIPAAPAQAQQAPAQAQAQQAAQQGRQMPGQQSAAAAQQRAQQAQRPVA 292

Query: 282 ----FFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
                       + + LA                  +     +            A L  
Sbjct: 293 APKPVKLGEVAEVERSLATSTSLTRTNGEPSLGVSVTMTPDGNAVAISHAVNEKKAELVR 352

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
                    V          S         +     ++V+ + +L  +  LV   SI L+
Sbjct: 353 AIGDSAQVTVVFDQAPYVERSIEDLTTEGLLGLVFAVLVILIFLLSVRSTLVTAVSIPLS 412

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           V++ L  L L   +L + ++  + + +G  VD +I+V E I+      ++   ++  G  
Sbjct: 413 VVIALIALWLGDYSLNMLTLGALTIAVGRVVDDSIVVLENIKRHLGYGEAKRDAVLAGVR 472

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI 514
                +  S +T +   + +   GG   +    FAIT+ +++L S+  +++++  +  + 
Sbjct: 473 EVSGAVTASTLTTVAVFLPIAVVGGMVGQLFAPFAITVTVALLASLLVSLTVIPVLAYWF 532



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/214 (17%), Positives = 81/214 (37%), Gaps = 7/214 (3%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V RS   S  +   + +   G    +         S A       + + I +   ++ 
Sbjct: 303 AEVERSLATSTSLTRTNGEPSLGVSVTMTPDGNAVAISHAVNEKKAELVRAIGDSAQVTV 362

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           + +      +   +L  +G++G++ + + +LI++         L    ++ L +   L  
Sbjct: 363 VFDQAPYVERSIEDLTTEGLLGLVFAVLVILIFLL---SVRSTLVTAVSIPLSVVIALIA 419

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             L     N+  + A+   +G  V+D +VV + ++   +      + RD +   + E  G
Sbjct: 420 LWLGDYSLNMLTLGALTIAVGRVVDDSIVVLENIK---RHLGYGEAKRDAVLAGVREVSG 476

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAF 803
               +++      LP+AV GG V   FA   +  
Sbjct: 477 AVTASTLTTVAVFLPIAVVGGMVGQLFAPFAITV 510



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 75/216 (34%), Gaps = 9/216 (4%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             V  S++  +   D   Q    +      +      S   +    +  K     +P    
Sbjct: 825  EVELSDVAKVAKVDGPTQVTRIDGERSATVSGTATGSDLGSATAALTAKLEGLSLPAGAK 884

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
                 V         + G+  ++ +   + + +   F+ +   L  + ++    T  +G 
Sbjct: 885  FTIGGVSADQEEAFGQLGL-AMLAAIAIVFMIMVATFRSFVQPLVLLVSVPFAATGAIGL 943

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
                G    + A+  +L LIG  V + +V+ D + +        +   + + +     L 
Sbjct: 944  LLATGTPLGVPALIGMLMLIGIVVTNAIVLIDLINQYR---EQGMGVVEAVIEGGRRRLR 1000

Query: 771  RSVYTSMAAFISVLPMAV----WGGSVIGSFAIPMA 802
              + T++A   +++PMA+     GG +    AI + 
Sbjct: 1001 PILMTAVATIFALIPMALGLTGSGGFISQPLAIVVI 1036


>gi|86156655|ref|YP_463440.1| acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773166|gb|ABC80003.1| Acriflavin resistance protein [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1054

 Score =  133 bits (334), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/542 (11%), Positives = 148/542 (27%), Gaps = 42/542 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     + +   +   GLL  +         D FP   P               +V    
Sbjct: 9   KRPIVTITVMLALVIFGLLALV-----TLKTDEFPDVQPPVV---------AVTIVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKE--GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
             + V   +    ++    +          S      +  + F   +        +   +
Sbjct: 55  SPETVEREVIDPIEDAIFSISGIDGKQTTASATDGLAQFIVFFDFEKNLMEATQDIRDAI 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L  + ++ +LV     +  IV        +   A   +          +   + 
Sbjct: 115 SSKRQDLPTEMEEPVLVRFDPSQEPIVTLTLTSKTLPVPA--LTRLADEVVSRDLRSVQG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       +L  + DP  +     + A++       N +             S   
Sbjct: 173 VADVRLVGGQKRELTVQLDPEAMAAASVSAAEVVGALQAQNLAAPVGRVNTPLGEQSIRL 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +    E                       ++    G +         +         
Sbjct: 233 SGRLATPEEFE--------------------QVAVASRGGQVVRLGQVAKVLDGAEEART 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +  +          K +      +  A    A      +      V + +      S 
Sbjct: 273 LALFNSGEAVGLEV-LKTKGYSTTAVADAVKERARALEPRMEGAKLAVVQDSGTRVRQSV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              + T    A L ++V+F+ +   +  ++   ++ ++V+     +   G TL   S+ G
Sbjct: 332 DDVQRTLIEGALLTVLVVFLFLNSWRSTVITGLALPVSVLAAFVSVWAFGFTLNTMSLLG 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVV 476
           + L IG+ +D  I+V E I       +    +   G      A +    S +   +    
Sbjct: 392 LSLAIGILIDDAIVVRENIVRHIELGEDHTTASHKGTDEIGLAVTATTFSIVAVFVPVAF 451

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           ++   G   + FA+T+  ++L+S+F + S+   M  +    +  K     P+ R     +
Sbjct: 452 MYGVAGQWFKPFALTIAAAVLVSLFVSFSLDPMMSAYWPDPQVEKGERRGPVGRALGAFN 511

Query: 537 CI 538
             
Sbjct: 512 RW 513



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 82/244 (33%), Gaps = 8/244 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + V L  V   L+  +          GE   L  L+ +   + A    ++   + + 
Sbjct: 250 RGGQVVRLGQVAKVLDGAEEARTLALFNSGEAVGLEVLKTKGYSTTAVADAVKERARALE 309

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
             +  + +   +  G ++ + +       +  + + +L+       W   +     L + 
Sbjct: 310 PRMEGAKLAVVQDSGTRVRQSVDDVQRTLIEGALLTVLVVFLFLNSWRSTVITGLALPVS 369

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLID 762
           +         FG   N  ++  +   IG  ++D +VV    R+N+ +             
Sbjct: 370 VLAAFVSVWAFGFTLNTMSLLGLSLAIGILIDDAIVV----RENIVRHIELGEDHTTASH 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           K  +E       T+ +     +P+A      G     FA+ +A  ++V+   S  +   +
Sbjct: 426 KGTDEIGLAVTATTFSIVAVFVPVAFMYGVAGQWFKPFALTIAAAVLVSLFVSFSLDPMM 485

Query: 820 LLFI 823
             + 
Sbjct: 486 SAYW 489



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 86/224 (38%), Gaps = 6/224 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  +V +Q           V ++ ++  +E+         +        E+  +  V +
Sbjct: 810  DRQRVVSVQGNVAGRSLSEVVNDIERRLASELKLPPGYTLRQGGESADQAEVFTRIGVAL 869

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + M + + ++F  +   L  + +L L +   +    + G   NL ++  V+ L G 
Sbjct: 870  LLAVMLMYLVLVLQFGSFLDPLAILLSLPLSLIGVVLALLVTGDTINLMSLIGVILLFGI 929

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPMAVW 789
               + +++ D  +         +S RD + ++    L   + TS+A     I V      
Sbjct: 930  VAKNAILLIDFAK--WAREERGLSIRDALVEAGGIRLRPIMMTSVAVIAGMIPVASGLGE 987

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG         +  G++ +   ++ +   +   +  WR +  R+
Sbjct: 988  GGDFRAPLGRAVIGGVITSTLLTLLVIPTVYEIMDGWRTRLGRL 1031


>gi|317491209|ref|ZP_07949645.1| CzcA family heavy metal efflux pump protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920756|gb|EFV42079.1| CzcA family heavy metal efflux pump protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 1046

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/555 (11%), Positives = 139/555 (25%), Gaps = 48/555 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   +++    +   GL         ++ LD  P       I           +    
Sbjct: 10  LKNRLLVLLAAIGLAVWGLWAV-----QKAPLDALPDLSDTQVI---------IRVSYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          +              + + + F D         +V  +L 
Sbjct: 56  KAPQVVENLVTYPLTTTMLSVPGAKTVRGFSMFGDSYVYVLFDDGTDPYWARSRVLEYLS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              S L  + K +L    T                     +           ++    + 
Sbjct: 116 QAQSTLPPEAKASLGPDATGVGWVYEY-ALTDTTGKYSLADLRALQDWTLKYELKTVPNV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ Q      P ++R L  T  ++S      N    G +  +          
Sbjct: 175 SEVASVGGMVRQYQVVLQPEKMRALNVTHDQISTAIKSANQEGGGSVLELGEAEYMVRTS 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +                            +  +  G              P       
Sbjct: 235 GYL-------------------QSLDDFRNVVIANRNGVPVMLSDVATLRLGPEMRRGVA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   I   ++  +   TI         L+    P    +           +  
Sbjct: 276 ELNGEGEVAGGIIVMRSGKNALETINAVKDKLQELQKSLPPGVKIVTTYDRSQLIERAID 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V ++  + + + +  LVA  S+ L ++    ++   G    + S+ GI
Sbjct: 336 TLSHKLLEEFIVVAVICALFLFHFRSALVAIISLPLGILGAFVIMHYQGVNANIMSLGGI 395

Query: 421 VLGIGLAVDSNILV-------NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            + IG  VD+ I++        E+ R EN               +A   +  +   +L+ 
Sbjct: 396 AIAIGAMVDAAIVMIENMHKVLEQWRHENENRTPSNAEYWKIAEKAAVEVGPALFCSLLI 455

Query: 474 TVVLFFF-------GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             + F          G      A T   ++ +S    I++V  +M + IR K        
Sbjct: 456 ITLSFIPVFALEAQEGKMFSPLAFTKTYAMAVSAGLGITLVPVLMGYFIRGKIPDENANP 515

Query: 527 PLSRFFLIPDCIAIQ 541
                      +   
Sbjct: 516 INRWLIKAYHPLLDW 530



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 84/254 (33%), Gaps = 12/254 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   +   V L  +     S     +  +N        V L+ +   S  +     + +
Sbjct: 786  PVVTASGAQVALGDLAQVRISEGPPMLKSENARLSDWVYVDLRGRDLKSAVEEMQSVVAE 845

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +         +         + S +L  + ++ + +  I +L+YI    K   AL  + T
Sbjct: 846  QVKLPEGVSLSWSGQFEYMERASAKL--QMVLPLTLMIIFVLLYITF-GKIRDALLIMCT 902

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L   +   +    L G   ++      + L G S    V++   +   ++ +        
Sbjct: 903  LPFALIGGVWLLYLLGYNLSVAGAVGFIALAGVSAEFGVIMLLYLNHAVEKHQQGDQPLT 962

Query: 760  ------LIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAAS 810
                   + +     +   V T       +LP+   GG    V+   A PM  G+V A  
Sbjct: 963  HQQMLAALHEGAVLRVRPKVMTVATIMAGLLPIMWGGGTGSEVMQRIAAPMIGGMVSAPL 1022

Query: 811  SSIFIAAPILLFIY 824
             S+ +   + L ++
Sbjct: 1023 LSMLVIPAVYLLLH 1036



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 84/249 (33%), Gaps = 18/249 (7%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +R  +  L             ++    L+           + + +   +  +      Q
Sbjct: 269 EMRRGVAELNGEGEVAGGIIVMRSGKNALETINAVKDKLQELQKSLPPGVKIVTTYDRSQ 328

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
             E     +S +L+ +    ++++ I  L      F +  AL AI +L L I        
Sbjct: 329 LIERAIDTLSHKLLEE---FIVVAVICAL----FLFHFRSALVAIISLPLGILGAFVIMH 381

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--------RKNMKLYTTSISFRDLIDKS 764
             G+  N+ ++  +   IG  V+  +V+ + M         +N     ++  +  + +K+
Sbjct: 382 YQGVNANIMSLGGIAIAIGAMVDAAIVMIENMHKVLEQWRHENENRTPSNAEYWKIAEKA 441

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILL 821
             E       + +   +S +P+          F   A    + + V+A   I +   ++ 
Sbjct: 442 AVEVGPALFCSLLIITLSFIPVFALEAQEGKMFSPLAFTKTYAMAVSAGLGITLVPVLMG 501

Query: 822 FIYDWRAKN 830
           +    +  +
Sbjct: 502 YFIRGKIPD 510


>gi|28211810|ref|NP_782754.1| preprotein translocase subunit SecD [Clostridium tetani E88]
 gi|28204252|gb|AAO36691.1| protein translocase subunit secD [Clostridium tetani E88]
          Length = 426

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/198 (17%), Positives = 83/198 (41%), Gaps = 4/198 (2%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +    +    K   +  +      + VG  +    +   I    I    + +
Sbjct: 211 IIEGSKSLEEAKRQADIIKSGALPVVVKPVEVKTVGATLGSNALPLSIKAGGIGIGLVFL 270

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ + ++    L A   L+L I   LG F        L+ +A +L  IG +V+  +++++
Sbjct: 271 FMILFYRVP-GLIANIALVLYIVMVLGTFVSIDAIITLSGIAGLLLTIGMAVDANILIFE 329

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+++ +   +T  S R  +D   N  L   + +++   I+ + +   G   +  FA+ + 
Sbjct: 330 RIKEEL---STGKSIRSSVDAGFNRALTSIMDSNITTIIAAIVLYNLGTGAVKGFALTLM 386

Query: 803 FGIVVAASSSIFIAAPIL 820
            GIV++  +++ +   +L
Sbjct: 387 IGIVLSMLTAVIVTRQLL 404



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 122/383 (31%), Positives = 218/383 (56%), Gaps = 26/383 (6%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
           +   D+V +  I++++E++  R++++G+SE+++ + G  RI I++PG  D   + + +G 
Sbjct: 68  EIQSDKVDAATIDRTIELLSMRVNKLGVSETSVTKEGQKRIRIEIPGIYDTKEVIETVGK 127

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
           T ++ F                             + KV ++G  +  A+     +T +P
Sbjct: 128 TGELKF--------------------------VGPDKKVILTGKDVKDASPQQHQETKQP 161

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           ++       G ++F E T    G+ +A+ +D  +LT PV+N  IP GK  I G+ ++E A
Sbjct: 162 IISFELTNEGTKKFAEATNKFKGQQIAIYMDEELLTNPVVNSVIPDGKGIIEGSKSLEEA 221

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
              A ++++G+LP+ +  VE + VGA LGS+++     A   G+ L+ LFMI+ Y   GL
Sbjct: 222 KRQADIIKSGALPVVVKPVEVKTVGATLGSNALPLSIKAGGIGIGLVFLFMILFYRVPGL 281

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +A+ ++ L +++ L     + A +TL  IAG++L IG+AVD+NIL+ ERI+EE    +S+
Sbjct: 282 IANIALVLYIVMVLGTFVSIDAIITLSGIAGLLLTIGMAVDANILIFERIKEELSTGKSI 341

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             S+D GF+RA ++I DSNIT +IA +VL+  G GAV+GFA+T+ + I++SM TA+ + R
Sbjct: 342 RSSVDAGFNRALTSIMDSNITTIIAAIVLYNLGTGAVKGFALTLMIGIVLSMLTAVIVTR 401

Query: 509 AMMIFIIRYKKMKSIDINPLSRF 531
            ++   +    + S+      R 
Sbjct: 402 QLLKLAVNAGLLNSLAAFGAKRR 424



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/423 (11%), Positives = 125/423 (29%), Gaps = 26/423 (6%)

Query: 1   MRN-------NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGG 53
           MRN       + +L+ L  ++      +A       + +  +        I  GLDL+GG
Sbjct: 6   MRNKKSSKGKSAFLLTLSVVVILS---LAYVGAFGINNIFGYKVKSFGETIKKGLDLQGG 62

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIA 112
             LV E+  D      +    + L   + K G+   S+  + Q +I +        + + 
Sbjct: 63  VSLVEEIQSDKVDAATIDRTIELLSMRVNKLGVSETSVTKEGQKRIRIEIPGIYDTKEVI 122

Query: 113 DKVTLFLQG----------VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE- 161
           + V    +           +  K   D        T +  IS  L+     +      + 
Sbjct: 123 ETVGKTGELKFVGPDKKVILTGKDVKDASPQQHQETKQPIISFELTNEGTKKFAEATNKF 182

Query: 162 QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
           +  +I     +++  +      +   + +I+     + ++ +  +  +  +         
Sbjct: 183 KGQQIAIYMDEELLTNPVVNSVIPDGKGIIEGSKSLEEAKRQADIIKSGALPVVVKPVEV 242

Query: 222 SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281
              G   G   L  S     +    V +                    + +    +    
Sbjct: 243 KTVGATLGSNALPLSIKAGGIGIGLVFL----FMILFYRVPGLIANIALVLYIVMVLGTF 298

Query: 282 FFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                   +     ++L   +     I       +   +G     +            + 
Sbjct: 299 VSIDAIITLSGIAGLLLTIGMAVDANILIFERIKEELSTGKSIRSSVDAGFNRALTSIMD 358

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
             +  +    V  +LG+ ++      ++ G+VL +L  +++  +   +A  +  LN +  
Sbjct: 359 SNITTIIAAIVLYNLGTGAVKGFALTLMIGIVLSMLTAVIVTRQLLKLAVNAGLLNSLAA 418

Query: 402 LAL 404
              
Sbjct: 419 FGA 421


>gi|294101315|ref|YP_003553173.1| acriflavin resistance protein [Aminobacterium colombiense DSM
           12261]
 gi|293616295|gb|ADE56449.1| acriflavin resistance protein [Aminobacterium colombiense DSM
           12261]
          Length = 1034

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/621 (8%), Positives = 165/621 (26%), Gaps = 44/621 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++++ ++  +G +           +D  P   P     L               
Sbjct: 9   KRRVTTLMIFLVVMLLGGI-----VFTSLKVDLLPEIEPPVINIL---------TSWPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +   + ++     +   +   + +++ F      +     V   +  
Sbjct: 55  SASDVEQRVSKIVENHIAMIEGVDTILSKSQDNISVVSVKFDWGEDLDVKIGDVRDAVNF 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D ++ +L+  T   + +++     D+             +   + I       
Sbjct: 115 AKRDLPSDAEEPILLRITSGTVPVLVMSLTADE---SLPGLYHYANKTISETISRISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L       ++  + +  ++         +       N +          +        
Sbjct: 172 QVLIYGGDRREIQVQLNIDKIEAYGLAPQAVVQVLERENINIPSGSLKDGQIEYYLRVPG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   ++                      I         +               + G 
Sbjct: 232 RFQSVEDM-------------------HKVIVGVSKNRPIYLSDVATISDSFKDPDIQGY 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   +       +   +      +  M            V          S   
Sbjct: 273 HAGKQSVILIVLKNSDANTVEVSQAVLKKMEDMKNREFPGDVEYHVGLDAADFIQDSVRN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +   LV +V +  +      L+   +I  ++++T  ++  L  T+ + +++ + 
Sbjct: 333 LSFSLFMGILLVFLVTWAFLKRLPASLIICGAIPFSLVITFIIMGWLDYTINIFTLSALA 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G+ VD++I+  ++I       +    +  +G     S +F S +T  +  + L F  
Sbjct: 393 VASGMVVDNSIVATDQIVYHLELGERRNVASILGAQEVQSALFASTLTTAVVLLPLAFIS 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLSRFFL 533
              G       I M ++++ S+F +++ V  M     +      K  +  +   +     
Sbjct: 453 GLVGVFFSALTIVMVVAVMASLFVSLTFVPMMGSRFFKREEDRLKMHQYTERLLVWLEQS 512

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + ++      +       +L  +      F           G I +    +  + +  
Sbjct: 513 YKNILSWSLFNRKKVIAAAILLLVLTLTGFRFIGTELTPEPDTGDISITFTLSEGIRIEK 572

Query: 594 VRSNLESLQIGDISFQNFDGE 614
               L+ +             
Sbjct: 573 TEELLKEIMAYAEKTVPEATN 593



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 84/253 (33%), Gaps = 24/253 (9%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              N  V    ++   +   +   +  +           +           +      ++ 
Sbjct: 795  QLNDTVGPPEIQRKNKQRYVVVEANVHGRSLGQLTQDARATIEKMDIPQDIRIDFGGEVE 854

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            E           ++   +   ++  G     +   + M       F   FAL  +     
Sbjct: 855  EKDKAFRQMGYLVLLGVLLVYMVMAGQYEAYLDPFVIM-------FSIPFALTGVA---- 903

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                    + L G+  +L A+  V+ L+G  VN+ +V+ D +     L    +  R+ + 
Sbjct: 904  ------FAYLLTGMYLSLQALLGVIMLVGIVVNNAIVLVDYIN---LLRARGLKLRESLL 954

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + T++  F  +LPMA+    G  +    AI +  G++V+   ++ I   I
Sbjct: 955  EAGERRLRPVLMTTLTTFFGMLPMAISQDQGAELWRPLAISVMGGLLVSTIVTLVIVPVI 1014

Query: 820  LLFIYDWRAKNAR 832
                 +   +  R
Sbjct: 1015 YSLFEEKLRRKKR 1027



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/271 (15%), Positives = 100/271 (36%), Gaps = 6/271 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             L   G    ++    + +GV  NRP+ LS V +  +S +  DI   +   +   L+ L
Sbjct: 225 YYLRVPGRFQSVEDMHKVIVGVSKNRPIYLSDVATISDSFKDPDIQGYHAGKQSVILIVL 284

Query: 622 QYQPGDS-VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +    ++      VL+ ++       P     +  +      ++ +R     + +  + +
Sbjct: 285 KNSDANTVEVSQAVLKKMEDMKNREFPGDVEYHVGLDAADFIQDSVRNLSFSLFMGILLV 344

Query: 681 LIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            +  W    +   +L     +   +  T           N+  ++A+    G  V++ +V
Sbjct: 345 FLVTWAFLKRLPASLIICGAIPFSLVITFIIMGWLDYTINIFTLSALAVASGMVVDNSIV 404

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
             D++  +++L                E       +++   + +LP+A   G V   F+ 
Sbjct: 405 ATDQIVYHLELGERR---NVASILGAQEVQSALFASTLTTAVVLLPLAFISGLVGVFFS- 460

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +   +VVA  +S+F++   +  +     K 
Sbjct: 461 ALTIVMVVAVMASLFVSLTFVPMMGSRFFKR 491


>gi|37676978|ref|NP_937374.1| putative silver efflux pump [Vibrio vulnificus YJ016]
 gi|37201522|dbj|BAC97344.1| putative silver efflux pump [Vibrio vulnificus YJ016]
          Length = 1042

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/644 (11%), Positives = 173/644 (26%), Gaps = 39/644 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++ N    + +D  P       I                  
Sbjct: 11  NNRFLVLIATLFLTLGGLYSVKN----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   E   +
Sbjct: 118 APKLPANAKPTLGPDATGVGWIYSYV-LQDKTGKHDLAQLRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P         
Sbjct: 237 LSSVEDI------------------QSLPLKVTDKGTPLLLGDIADINIGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+      A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASQVIDNVKAKLADLQRSLPEGVEIVSTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V +V  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR   +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGNVLPEHKNPVNKGLVSLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    ++     + +++     +       G  +      G  + +    P       
Sbjct: 519 RPLLSLSLKYPKSMIVLALGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L       I            +       D    T +  +++
Sbjct: 579 RELLQQTNKLIKTVPEVETVWGKIGRADTATDPAPLTMIETVIQ 622



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 82/287 (28%), Gaps = 20/287 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S  Q     + ++                   +    L     V V I
Sbjct: 816  WVFVDIDGRDLGSYVQEAQNVVAEQLELPAGYSLAWSGQYEYMERAKERLS----VVVPI 871

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYS 733
            +   +++ ++  F+       I    L +    G       G  F++      + L G +
Sbjct: 872  TLAIIMLLLYFSFR-RVGEVLIIMATLPLAMVGGLWLMHYLGYNFSIAVGVGFIALAGVA 930

Query: 734  VNDKVVV---------YDRMR-KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++         Y ++  +  KL        D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHYKKLHAEENKLSLKPQDLTDAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +P+      G  V+   A PM  G+  A   ++ +   I     +  
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKNKE 1037



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/208 (13%), Positives = 66/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           N+       IS  N +GE    V +     ++      ++     +   +P      +  
Sbjct: 266 NIGPQMRRGISEFNGEGEAVGGVIVMRFGENASQVIDNVKAKLADLQRSLPEGVEIVSTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + +      F    +L    +L + I          G
Sbjct: 326 DRSTLINAAVENLWKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|220932063|ref|YP_002508971.1| protein-export membrane protein SecD [Halothermothrix orenii H 168]
 gi|219993373|gb|ACL69976.1| protein-export membrane protein SecD [Halothermothrix orenii H 168]
          Length = 403

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 83/204 (40%), Gaps = 4/204 (1%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +    + +  +   +     +  T +VGP + +    + I+  +I    + IY+   
Sbjct: 194 KTIEEAQKDAILIREGSLPVPVKVIETRMVGPTLGKISKNRSIMAGLIGLALVAIYMIFY 253

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +++   L A   LI+     +G  A       L  +A  +  IG +V+  +++++R+++ 
Sbjct: 254 YRFP-GLLAAVALIIYGIIFIGVLAGLQATLTLPGIAGFILSIGMAVDANIIIFERIKEE 312

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +   +    +  ID          +  ++   I+ L +A +    +  FA+ +  G++ 
Sbjct: 313 RR---SGKGIKSSIDAGFKRAFTTVIDANITTLITALILAYYTSGTVRGFAVTLVIGVLT 369

Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831
           +  ++ ++   I+    + +   +
Sbjct: 370 SMFTAFYVTRNIINLFTNTKLLKS 393



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 206/385 (53%), Gaps = 28/385 (7%)

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                I +        ++ +  ++    II +R++Q+G++E  IQR G  RI+++LP   
Sbjct: 37  EGGSHIVLRAEPTENREINNEIMKDIENIIERRVNQLGLTEPVIQRQGKDRIIVELPAVD 96

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           + +     +  TA ++F                               +V ++G ++  A
Sbjct: 97  NSTEAINTIERTAVLTFRNSD--------------------------GEVLMTGDYVVDA 130

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
             ++    H+PVV    ++ GAR+F  +T   + + + + LD  +L  P ++  I     
Sbjct: 131 RPDY-DLYHRPVVTFKLNDEGARKFEAITTQYLNRRIGIYLDDELLNNPRVSNVIRGE-G 188

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G  TIE A   A ++R GSLP+ + ++E R VG  LG  S  +   A + GL L+ +
Sbjct: 189 QITGYKTIEEAQKDAILIREGSLPVPVKVIETRMVGPTLGKISKNRSIMAGLIGLALVAI 248

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           +MI  Y   GL+A  ++ +  I+ + +L+ L ATLTLP IAG +L IG+AVD+NI++ ER
Sbjct: 249 YMIFYYRFPGLLAAVALIIYGIIFIGVLAGLQATLTLPGIAGFILSIGMAVDANIIIFER 308

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           I+EE R  + +  S+D GF RA++T+ D+NIT LI  ++L ++  G VRGFA+T+ + +L
Sbjct: 309 IKEERRSGKGIKSSIDAGFKRAFTTVIDANITTLITALILAYYTSGTVRGFAVTLVIGVL 368

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKS 522
            SMFTA  + R ++      K +KS
Sbjct: 369 TSMFTAFYVTRNIINLFTNTKLLKS 393



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/382 (10%), Positives = 114/382 (29%), Gaps = 35/382 (9%)

Query: 45  SLGLDLRGGSHLVLEVDED---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITL 100
           +LGLDL GGSH+VL  +     +  N  ++   + +   + + G+    +++   ++I +
Sbjct: 31  NLGLDLEGGSHIVLRAEPTENREINNEIMKDIENIIERRVNQLGLTEPVIQRQGKDRIIV 90

Query: 101 SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
                       + +                   ++T    +  ++++ + +        
Sbjct: 91  ELPAVDNSTEAINTIERTA---------------VLTFRNSDGEVLMTGDYVVDARPD-- 133

Query: 161 EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPN 220
                      D       T +         +    Q  +R   +      ++  +V   
Sbjct: 134 ----------YDLYHRPVVTFKLNDEGARKFEAITTQYLNRRIGIYLDDELLNNPRVSNV 183

Query: 221 NSKKGFMFGVRFLRDSDGNQYLV-EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
              +G + G + + ++  +  L+ E  + +    +                 I    +G 
Sbjct: 184 IRGEGQITGYKTIEEAQKDAILIREGSLPVPVKVIETRMVGPTLGKISKNRSIMAGLIGL 243

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
                        P  +     ++   +    +   +A ++          +   + A  
Sbjct: 244 ALVAIYMIFYYRFPGLLAAVALIIYGIIFIGVLAGLQATLTLPGIAGFILSIGMAVDANI 303

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAG---LVLIVLFMIVLYGKWGLVADFSIFL 396
           +  +    E R+      S                +  ++  +I+ Y   G V  F++ L
Sbjct: 304 IIFERIKEERRSGKGIKSSIDAGFKRAFTTVIDANITTLITALILAYYTSGTVRGFAVTL 363

Query: 397 NVILTLALLSLLGATLTLPSIA 418
            + +  ++ +    T  + ++ 
Sbjct: 364 VIGVLTSMFTAFYVTRNIINLF 385


>gi|298241680|ref|ZP_06965487.1| acriflavin resistance protein [Ktedonobacter racemifer DSM 44963]
 gi|297554734|gb|EFH88598.1| acriflavin resistance protein [Ktedonobacter racemifer DSM 44963]
          Length = 1077

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 64/565 (11%), Positives = 163/565 (28%), Gaps = 31/565 (5%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
              +  I +L+     +P    + FPS                   V        V   +
Sbjct: 14  VVALATIAILLLGGFIIPSLKQELFPSITFPTL---------SVVAVYPGASPSVVERDV 64

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               ++    +K          Q    + +SF      ++    VT  +    + L  + 
Sbjct: 65  TNPLEQNIQGIKGVQKVTSYSNQGTAVLVVSFDYGTDIDSATQTVTQRINKAQTSLPSNV 124

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
               + + +  +  I+    + D+        +  +    +  +   +       +    
Sbjct: 125 TPQ-VQSFSFTDFPIIQLAVSADE---DQQVLADALKHDVVPDLQRIDGVGTVNVTGVRT 180

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF-----------MFGVRFLRDSDGN 239
             +    D  +L+    + +++       N +                 G       D  
Sbjct: 181 QIVTITVDLQKLKDHGVSFSQLQGALQANNVTLPAGSTTSDGKTIPITAGNTLNSLDDLK 240

Query: 240 QYLVEDKVEISGI----HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             +V  +   +G      +     +          + +     A+         + + L+
Sbjct: 241 NLVVGSQSASTGSGFPGTVTIPGTSTGAGFTISGANTTQTFAPAKPVKLQDVATVKEDLS 300

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                                   +     +        L+          V      + 
Sbjct: 301 PSTSLTRTNGQPSLGISLVKTTSGNTVSISQAVNQDITALQNKLGHGAKISVISDQAPSI 360

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S +       I A   ++V+ + +   +  LV   SI L++++ L  L     TL + 
Sbjct: 361 TQSVNDLTREGLIGAFFAIVVILLFLFSLRSTLVTAVSIPLSIVIALIGLYFGNYTLNIL 420

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ + +G  VD +I+V E I     + +    ++  G       +  S +T +   +
Sbjct: 421 TLGGLTIAVGRVVDDSIVVLENIYRHLNEGEEKKSAVINGVREVSGAVTASTLTTVAVFL 480

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F G   G   R F++ + +++L S+F A++I+  +  + ++  K + +     ++  
Sbjct: 481 PIAFTGGLVGELFRSFSVAVTVALLASLFVALTIIPVLAYWFLKGPKAEVLAKRQGTKKH 540

Query: 533 LIPDCIAIQFMRARFWGVGISILFS 557
                        R+          
Sbjct: 541 SGSWLERGYVAIVRWVTGAWWQRTV 565



 Score = 84.0 bits (205), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 72/213 (33%), Gaps = 6/213 (2%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +              V + +     ++   + I       P I++ +      G+I 
Sbjct: 315 GISLVKTTSGNTVSISQAVNQDITALQNKLGHGAKISVISDQAPSITQSVNDLTREGLIG 374

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           +  A+++ +   F     L    ++ L I   L          N+  +  +   +G  V+
Sbjct: 375 AFFAIVVILLFLFSLRSTLVTAVSIPLSIVIALIGLYFGNYTLNILTLGGLTIAVGRVVD 434

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GS 792
           D +VV + +    +        +  +   + E  G    +++      LP+A  G   G 
Sbjct: 435 DSIVVLENI---YRHLNEGEEKKSAVINGVREVSGAVTASTLTTVAVFLPIAFTGGLVGE 491

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +  SF++ +   ++ +   ++ I   +  +   
Sbjct: 492 LFRSFSVAVTVALLASLFVALTIIPVLAYWFLK 524



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 95/287 (33%), Gaps = 11/287 (3%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
               S +  I          L  G        +  L+      SV   ++ ++   +   Q
Sbjct: 770  YSGSTVTHITVNGSQQDVDLFVGNPASNIDAIKALSIPTTTGSVKIGDIATVTQVNGPTQ 829

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                + N    +     DS        +        +P     +   +    S      G
Sbjct: 830  VTHIDGNRTATVNATVTDSNVGAVSANVQSSLDKLSLPSGAKVSLGGISADQSDTFRNLG 889

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  V+I+ I +   +   F+     +  + ++    T +L             A+   L 
Sbjct: 890  L-AVLIAIILVYCIMVATFRSLLQPVILLISIPFAATGSLILLLATNTPLGAAALIGFLM 948

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G  V + +V+ D +R+        ++ R+ I +     L   + T++A  ++++PM +
Sbjct: 949  LVGIVVTNAIVLLDLVRQYR---EQGMTAREAIVEGGRHRLRPILMTAIATILALMPMVL 1005

Query: 789  ------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                   GG +    AI +  G+  +   ++ +   + +     R +
Sbjct: 1006 GIGGAGSGGFISRPLAIVVIGGLTTSTILTLIVVPTLYVIAESARGR 1052


>gi|297161168|gb|ADI10880.1| putative integral membrane protein [Streptomyces bingchenggensis
           BCW-1]
          Length = 737

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 68/518 (13%), Positives = 163/518 (31%), Gaps = 66/518 (12%)

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA---TLTLPSIAGIVLGIGLAVD 429
            L +L ++       L+  F      I T  LL+L        +       ++G+ + VD
Sbjct: 185 ALGILLVVFGALVAALLPVFLGVTACIGTFGLLALASHKLPMFSSTQSVMFLVGLAVGVD 244

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
             +    R R+E    +    +L +  + +   +  S IT ++A   +F  G    +GFA
Sbjct: 245 YCLFYLRRERDERAAGRDAETALRIAAATSGRAVLVSGITVMLAMSGMFLSGLLLFKGFA 304

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +   L +  +M  +++++ AM+ ++        + +        +     I     +   
Sbjct: 305 VATILVVFTAMLGSVTVLPAMLSWLGDRIDAGRVPLLNRRGRKGVHASGGISGRLMKPVL 364

Query: 550 VGISILFSICSICLLFTHGLNYGI---------DFKGGIQLGVLANRPV----------- 589
               +   +    LL       G+          F    +L V                 
Sbjct: 365 AKPGLFAVLAGAVLLALCAPALGMKTEQLGMEKQFGKDSKLTVAFKEITGAFPGGPAPAE 424

Query: 590 ---------------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                           ++ ++  L +      + +    +   + R++     + +    
Sbjct: 425 VIVRADDVSSPRFQGAVADLKKKLAAAGEFGKTVKVELHKDKDVARIEVPLAGNGSDDAS 484

Query: 635 LEMVKKKITEIVP-------LSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWI 686
              +     ++VP              E        + +  G + V++   A+  + + +
Sbjct: 485 KHALSTLKDDLVPQVLGPVSDKAYVGGETAANVDFNDQLADGFLPVLLFIAAVTFLLMLV 544

Query: 687 RFK-WYFALGAITTLILDITKTLGFFAL----------FGIEF-----NLTAVAAVLTLI 730
            F+    A+ AI   +L +    G               G+E      +   +  ++ L 
Sbjct: 545 CFRSLPIAITAILLNLLSVGAAYGTMTAVFQHGWGAETLGMEPAGAVESWMPLFVLVILF 604

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G S++  V V  R+R+    +   ++ R+ I   I  T G     +          A+  
Sbjct: 605 GLSMDYHVFVVSRIRE---AHERGLATREAIRDGIRSTAGSITGAAAIMVAVFAVFALLQ 661

Query: 791 GSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
              +    I +A  ++V      + +   ++  + +  
Sbjct: 662 MQDMQQMGIGLAVAVLVDATLVRMVLLPSVMALLGERN 699



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/270 (11%), Positives = 81/270 (30%), Gaps = 18/270 (6%)

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
           ++                L     +  +   V+  + S    +                +
Sbjct: 75  MVMLRSAEPDGWRDAAGDLTARLEKTGEAVRVQPPVRSESGREGLISFEMKGDADTAGER 134

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
            +P     +         +  E+   S   + + +   +S +L    +  V ++   +L+
Sbjct: 135 IEPVLDAVKQTEAAHEGVQAYEVGDASFAHSLDAI---LSGDLKTAELTAVPLALGILLV 191

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIE------FNLTAVAAVLTLIGYSVND 736
                  +   + A+  + L +T  +G F L  +       F+ T     L  +   V+ 
Sbjct: 192 V------FGALVAALLPVFLGVTACIGTFGLLALASHKLPMFSSTQSVMFLVGLAVGVDY 245

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
            +    R R               +  +   +    + + +   +++  M + G  +   
Sbjct: 246 CLFYLRRERDERAA---GRDAETALRIAAATSGRAVLVSGITVMLAMSGMFLSGLLLFKG 302

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           FA+     +  A   S+ +   +L ++ D 
Sbjct: 303 FAVATILVVFTAMLGSVTVLPAMLSWLGDR 332


>gi|73661961|ref|YP_300742.1| cation multidrug efflux pump [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72494476|dbj|BAE17797.1| putative cation multidrug efflux pump [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 1057

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 62/584 (10%), Positives = 169/584 (28%), Gaps = 43/584 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + + L  ++  +G + A      +  L+  P   P                 +     
Sbjct: 12  NKFAIFLMVLLVILGGVYAS----SKMKLELLPDVEPPMIT---------VQTSMPGATP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    D+    +           Q  + +T+ + +    +   + +   L  + 
Sbjct: 59  ETVKEDVSDKIDDQIRSMAGVKNVNAQSIQNASMVTVEYNEGTNLDKAENDLKKELDKIK 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                + ++  L  ++     IV      +   +   + + +I  Q + ++   +     
Sbjct: 119 --FGENVEEPELTRSSMDAFPIVAYSFTTND--NDLKDTTRKINNQLLPKLQTIDGVQNA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             + +   ++  + D  +L     T  ++  +     +     +F       S       
Sbjct: 175 QLNGQTSREVSIKFDQDKLEASGLTKERVQQYLKSATSETPLGLFQFNDTEKSVVIDGQF 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL--------- 294
                +  + +  + A  D ++       S          +                   
Sbjct: 235 TSVKALENLDIPLSAAAGDSQSQGDDGASSQGAEQQASASQSATTASSSQSSDSEVPSVK 294

Query: 295 ----------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL 344
                                        +     +     +            +  + +
Sbjct: 295 LKEIAQVSAGDERASISKTNGKDAVNVQITKAQDANTVQVAKDTKKEIDQFIKDNPKM-V 353

Query: 345 NIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL 404
                        +        A+   + +IV+ + +   +   ++  SI +++++ +  
Sbjct: 354 ATKVMDTAKPIEDALYTMIEKAALGTIVAIIVILLFLRNIRTTAISIVSIPMSILIAMVA 413

Query: 405 LSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ---SVFCSLDMGFSRAYS 461
           L L   +L + ++  + + IG  +D +I+V E I                +    S  + 
Sbjct: 414 LKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLSDKSEALKGDQLIVSATSEVFK 473

Query: 462 TIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
            I  S I  ++  + L F     G   R FA+ +  S+L S+  +I+IV A+     +  
Sbjct: 474 PIMSSTIVTIVVFLPLAFVSGSVGEMFRPFALAIAFSLLASLLVSITIVPALSATFFKKG 533

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
            ++      L         +    +  ++  + +S +  I SI 
Sbjct: 534 VIQHKQETSLGFIGRKYKSVLNWSLNHKWIVIIVSTIILIASIG 577



 Score = 90.9 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 86/235 (36%), Gaps = 3/235 (1%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + + +        +    +   +   + Q  ++V   +  +    +  +  P       
Sbjct: 298 IAQVSAGDERASISKTNGKDAVNVQITKAQDANTVQVAKDTKKEIDQFIKDNPKMVATKV 357

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   L        + + +A+++ +           +I ++ + I   +    L 
Sbjct: 358 MDTAKPIEDALYTMIEKAALGTIVAIIVILLFLRNIRTTAISIVSIPMSILIAMVALKLS 417

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            +  N+  + A+   IG  ++D +VV + + + +   + ++    LI  + +E     + 
Sbjct: 418 DVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLSDKSEALKGDQLIVSATSEVFKPIMS 477

Query: 775 TSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +++   +  LP+  V G  G +   FA+ +AF ++ +   SI I   +    +  
Sbjct: 478 STIVTIVVFLPLAFVSGSVGEMFRPFALAIAFSLLASLLVSITIVPALSATFFKK 532



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 92/250 (36%), Gaps = 8/250 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P   SV  S++  L+      +      + +  +  +  +        +++ K   
Sbjct: 803  ELQSPTGQSVELSDIAELEESTTPNKIETKAGDEIATVSAKITNDDVGGASQKIMSKVNH 862

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
               P +   N       IS  + +   + ++ + I + + + + FK        + +L  
Sbjct: 863  IDTPSNVKVNVGGANEDISNAITQLA-MAMLAAIIIVYLVLVLTFKGALAPFTILFSLPY 921

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   +    + G   ++ ++  +L LIG  V + +V+ DR+   +      +  +  + 
Sbjct: 922  TIIGVVVALVITGETISVPSMIGMLMLIGIVVTNAIVLIDRV---INKEKQGLEMKAALL 978

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    +   + T++A   ++ PM     S I      A  +  G++ +   ++ +   I
Sbjct: 979  EAGGTRIRPILMTALATIGALAPMLFGEDSSIIISKGMAATVVGGLISSTLLTLIVVPVI 1038

Query: 820  LLFIYDWRAK 829
               ++  + K
Sbjct: 1039 YEILFTLKRK 1048


>gi|228475433|ref|ZP_04060151.1| mmpl domain protein [Staphylococcus hominis SK119]
 gi|228270215|gb|EEK11650.1| mmpl domain protein [Staphylococcus hominis SK119]
          Length = 847

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/552 (14%), Positives = 182/552 (32%), Gaps = 59/552 (10%)

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            +  + +    +++ +           +    NI  E+  G  +GS+            +
Sbjct: 127 IANISYVVPQTSMQDSSKKIVNKALQDIKDNHNIQIEKTTGMSMGSEPGGVSEIVG-IVV 185

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLAVD 429
             I+L +         +   S  L +  ++ ++SLL     +P+      +++G+ + +D
Sbjct: 186 AFIILLITFGSLIAAGMPIISAILGLATSVGMISLLTFMFDIPNFTLTLAVMIGLAVGID 245

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
            ++ +  R +E  +   +   ++      A S +  + IT ++A   L   G   +    
Sbjct: 246 YSLFILFRYKEIKKSGTATVEAIGKAVGTAGSAVIFAGITVMMAVCGLSLVGIDFLAIMG 305

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
               +S+L ++  A++++ A++    +  K+K+                 +         
Sbjct: 306 FASAISVLFAVLAALTLLPALISIFHKSIKIKNKPTKNKDPKHHPWAKFVVGKPVLATII 365

Query: 550 VGISILFSICSICLL--------------------FTHGLNYGIDFKGGIQLGVLANR-- 587
             + ++ +I  I  +                         N+G  + G I + V      
Sbjct: 366 SLVILILAIIPITGMRLGIPDDSLKPNDSSEHKAYQLISDNFGEGYNGQIVMLVNTKDGG 425

Query: 588 -----PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                  DLS +R ++E L   D   +      N        P +        ++V +  
Sbjct: 426 SKTSIENDLSNMRRDIEDLDNVDTVSKAQLNGNNHYAIFTIIPNEGPNAKSTTDLVYELR 485

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---------IVGVIISAIAMLIYIWIRFKWYFA 693
                     + +      S   I               VI+    +L+ I  R      
Sbjct: 486 DYHKDAEDKYHYDTEISGQSVINIDMSEKLNDAIPVFASVIVILAFILLMIVFR-SILVP 544

Query: 694 LGAITTLILDITKTLGF----------FALFGIEFNLT-----AVAAVLTLIGYSVNDKV 738
           L A+   +L +  TLGF            LFG++          V  +  L G +++ ++
Sbjct: 545 LKAVLGFVLSLMATLGFTTLVMQDGVMSGLFGVDNTGPLLAFLPVITIGLLFGLAIDYEL 604

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            +  R+ +    Y+ +      I   I E+    V  ++  F   +       + I S  
Sbjct: 605 FLMTRVHEE---YSKTGDNDHSICVGIKESGPVIVAAALIMFSVFIAFIFQDDTAIKSMG 661

Query: 799 IPMAFGIVVAAS 810
           + +AFG++  A 
Sbjct: 662 LSLAFGVLFDAF 673



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 81/220 (36%), Gaps = 10/220 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++      ++++     S Q        +  + Y    +  Q    ++V K + +I    
Sbjct: 99  NIKQDDDYIQNISNPYESGQVNSEGDTAIANISYVVPQTSMQDSSKKIVNKALQDIKDNH 158

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG-AITTLILDITKTL 708
            IQ  +  G  +       G V  I+  +   I + I F    A G  I + IL +  ++
Sbjct: 159 NIQIEKTTGMSMGS---EPGGVSEIVGIVVAFIILLITFGSLIAAGMPIISAILGLATSV 215

Query: 709 GFFALFGIEFNLT-AVAAVLTLIGY--SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
           G  +L    F++      +  +IG    ++  + +  R ++   +  +  +  + I K++
Sbjct: 216 GMISLLTFMFDIPNFTLTLAVMIGLAVGIDYSLFILFRYKE---IKKSGTATVEAIGKAV 272

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
                  ++  +   ++V  +++ G   +       A  +
Sbjct: 273 GTAGSAVIFAGITVMMAVCGLSLVGIDFLAIMGFASAISV 312


>gi|114706397|ref|ZP_01439299.1| Cation/multidrug efflux pump [Fulvimarina pelagi HTCC2506]
 gi|114538258|gb|EAU41380.1| Cation/multidrug efflux pump [Fulvimarina pelagi HTCC2506]
          Length = 1067

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/625 (9%), Positives = 165/625 (26%), Gaps = 35/625 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              VLE    +     +    +   S L           +    + L+F      +    
Sbjct: 48  VSTVLEGISPEDAERLMIKPLETELSSLSGLDEIEGQAYEGFASVQLTFEAGFDADEALT 107

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +      L  + ++  +         IV    +        +  + E      D 
Sbjct: 108 DVKDAVDRAKPNLPAEAEEPTVNEVNTSLFPIVTIVLSGPVPERTLVNLASE----LQDD 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +  +   ++          +    DP+       +   +                     
Sbjct: 164 LESAPGVLEVDIGGDRDELMEVLIDPTVFETYDISFDALLEQL----------------- 206

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                N  L+      +G            +    V+D+     G+            + 
Sbjct: 207 ---SRNNRLIAAGAIDTGAGRIVVKVPGLVEDVSDVLDMPIKVDGSTVITFKDVAVARRT 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                    +            ++  +   T++ A  + A  +            +    
Sbjct: 264 FQDPEGFARIDGQPSLALEVKKRSGANIIETVDAARRVVAQHQETWPDTLSVEFLQDESE 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             +   +  +        LV+IV+   +      ++   SI  + +  +A+L + G T+ 
Sbjct: 324 QVVSMLTDLENNVISAIVLVMIVVVAALGLRTS-ILVGLSIPGSFLAGIAILWMAGFTMN 382

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           +  +  ++L +G+ VD  I+  E       +  +   +      R    I  S +T L  
Sbjct: 383 IIVLFSLILVVGMLVDGAIVTTELADRRLLEGAAPREAYRHAAKRMAWPIIASTVTTLAV 442

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + L F+    G  ++   +T+ +++  S+  A+  +  +   I + + M       L  
Sbjct: 443 FLPLLFWPGIVGEFMKFLPLTVIITLTASLAMALVFIPVLGGVIGKAQPMPRKQREALEA 502

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLL-------FTHGLNYGIDFKGGIQLGV 583
                              +  ++   + ++ +        F     YG   +    +  
Sbjct: 503 AESGDLSTIRGTTGVYLKVLNAALKGPLATLIIAISILVAGFYGYAQYGRGVEFFPSIEP 562

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +    +    ++          +N   + + +  +  +     +  ++   V   + 
Sbjct: 563 EFAQVQIRARDNFSIFEKDAIVRQVENRLLDLDEVESVYARTISEGSSRQLGADVIGTVQ 622

Query: 644 EIVPLSTIQNTEIVGPKISRELIRK 668
             +     +          R L   
Sbjct: 623 LELDEWDQRRKATEIFDDVRALTDD 647



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 80/226 (35%), Gaps = 20/226 (8%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  ++ ++    + +     +  + +++ +I     ++ T     +  +E         
Sbjct: 806  DQRRVMSIEADEAEGLLVDDQVRKLTQRLEQIDLPPGVEYTFGGEAEDQQEAANFLTSAF 865

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIG 731
             ++   M I +  +F   Y A   ++ ++      L    + G  F +      V+ L G
Sbjct: 866  AVALSLMFIVLVTQFNSLYQAFLVMSAIVFSTAGVLYGLLITGRPFGIVMGGIGVIALAG 925

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VN+ +V+ D       L        + + ++  + L     TS+   + ++PM V   
Sbjct: 926  IVVNNNIVLIDTYND---LRRQGQPPLEALLRTGAQRLRPVFLTSVTTVLGLVPMVVGAN 982

Query: 789  ---------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLF 822
                     +G          +  +A G+  A   ++ +   +L+ 
Sbjct: 983  VDFLNRTIEFGAPSTQWWTELSASIAGGLTFATILTLVLTPALLML 1028



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/234 (11%), Positives = 79/234 (33%), Gaps = 14/234 (5%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+  +      I  Q     +              A  RV+   ++   + + +  +Q+ 
Sbjct: 262 RTFQDPEGFARIDGQPSLALEVKKRSGANIIETVDAARRVVAQHQETWPDTLSVEFLQDE 321

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +  +L    I  +++  I ++  + +R      L     +       +    + 
Sbjct: 322 SEQVVSMLTDLENNVISAIVLVMIVVVAALGLRTSILVGLS----IPGSFLAGIAILWMA 377

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVV---VYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           G   N+  + +++ ++G  V+  +V   + DR            + R+    +       
Sbjct: 378 GFTMNIIVLFSLILVVGMLVDGAIVTTELADR------RLLEGAAPREAYRHAAKRMAWP 431

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +  S    ++V    ++   ++G F   +   +++  ++S+ +A   +  +  
Sbjct: 432 II-ASTVTTLAVFLPLLFWPGIVGEFMKFLPLTVIITLTASLAMALVFIPVLGG 484


>gi|209548541|ref|YP_002280458.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209534297|gb|ACI54232.1| acriflavin resistance protein [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 1039

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 70/584 (11%), Positives = 161/584 (27%), Gaps = 40/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +   GL            +   P       I+            L   
Sbjct: 8   QRPVATTLLAIGVILAGLA-----GYRLVPVAALPQVDFPT-IN--------VSAQLSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +     +    +        S     + I L F  +R  +  A  V   +  
Sbjct: 54  SPQTMATSVATPLIKQFETIPGITEISASSSLGSSSIVLQFDLNRDIDAAAADVQAAISH 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  +         T      ++L     + +    +++  E I      +      
Sbjct: 114 ATRQLPDNLTTPPSYRKTNPADAPVMLLSVQSNTMPRSKLDEIAEDI--ISPSLSTLPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  E DP++L         ++      N+ +                 
Sbjct: 172 AQVSVFGAQTYAVRVEVDPNKLLTRGIGIDTVNKALAAANSQQPVGTLQ----------- 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    +       TAN      +    +                ++   +     G
Sbjct: 221 ---------NNSQSMTITANTQRTNAEQFRSLVIANPNGAPIHLGDVADVQDSVENQYTG 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    I+        L A   P    +V          + S
Sbjct: 272 SWYDGQRGIILAIQRQPDANTVDVIDAINAKLPQLHAEIPPSVNTVVMNDAAKPIRAAIS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +  GLV++V+++   +    ++   ++ L++I T  ++ +LG ++   S+ G+
Sbjct: 332 DVKFTLFLTIGLVVLVIYLFTGHATATIIPGLAVPLSLISTFGMMYVLGYSIDNISLLGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL VD  I++ E I     +   V  +   G      TI   +++ +   + +   
Sbjct: 392 TLAVGLVVDDAIVMLENILRHVEEGMPVREAAIKGAGEVSYTIISMSVSLIAVFIPILLM 451

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG   R    F + + ++I+ S   ++++   +   +        + I      F     
Sbjct: 452 GGVVGRVFNEFGMVVAIAIISSAIVSLTVTPMLGSRLSNNHSRPPLLIRIFDAGFERTLN 511

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              + +          +   + S+ L     +     F     +
Sbjct: 512 GYDRAVGWCLHHRLTILGVFVGSVALTIYFFMTLPTSFFPQEDI 555



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 82/232 (35%), Gaps = 12/232 (5%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +     +  +     +    + L  Q         V++ +  K+ ++          
Sbjct: 257 DVADVQDSVENQYTGSWYDGQRGIILAIQRQPDANTVDVIDAINAKLPQLHAEIPPSVNT 316

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +V    ++ +       K  + + I  + ++IY+         +     + L +  T G 
Sbjct: 317 VVMNDAAKPIRAAISDVKFTLFLTIGLVVLVIYL-FTGHATATIIPGLAVPLSLISTFGM 375

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G   +  ++  +   +G  V+D +V+ + +   ++     +  R+   K   E   
Sbjct: 376 MYVLGYSIDNISLLGLTLAVGLVVDDAIVMLENI---LRHVEEGMPVREAAIKGAGEVSY 432

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
             +  S++     +P+ + GG V      F + +A  I+ +A  S+ +   +
Sbjct: 433 TIISMSVSLIAVFIPILLMGGVVGRVFNEFGMVVAIAIISSAIVSLTVTPML 484



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 96/265 (36%), Gaps = 6/265 (2%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                +    +       +         V  SN   +Q            +     + +  
Sbjct: 750  IVEYDTSKPWDDQKLSEIRVISANGSLVPLSNFAHVQRTTGPVTINQTGQLVSTTVSFNL 809

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             + V+ +     +++   +I   + +  +     +I ++        ++ + + + + + 
Sbjct: 810  PEGVSLSDATAAIEQIKKDISVPADVFTSYGGTAEIFQQSQGNTPYLILAAVLTIYVVLG 869

Query: 686  IRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++ +   L  ++ L       L    + G + ++ A+  +LTLIG    + +++ D  
Sbjct: 870  VLYESFIHPLTILSGLPAAAFGALLALKIMGFDLSIIALIGLLTLIGIVKKNAIMMIDVA 929

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPM 801
             + M+  TT       I ++        + T+  A +  LP+A+  G    +     I +
Sbjct: 930  VETMR--TTGEKATAAIHEACVRRFRPIMMTTFCALLGALPIALGTGASSELRQPLGIAV 987

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW 826
              G++V+   ++FI   I + +  +
Sbjct: 988  VGGLIVSQMLTLFITPVIFVEMDRF 1012


>gi|330993882|ref|ZP_08317814.1| Multidrug resistance protein mdtC [Gluconacetobacter sp. SXCC-1]
 gi|329759150|gb|EGG75662.1| Multidrug resistance protein mdtC [Gluconacetobacter sp. SXCC-1]
          Length = 1098

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 73/516 (14%), Positives = 152/516 (29%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   +   G+L           +   P+      I +     GGS       
Sbjct: 9   RRPVATILLTVALVLGGVL-----GYMTLPVADMPNVDFP-VIQVQARQSGGS------- 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +             Q +ITL F+  R     A  V   LQ 
Sbjct: 56  -PEEIASSVAAPLERHLGAIAGLTEMTSQSSANQARITLQFSLDRDINGAARDVEAALQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            ++ L    ++N          + V+    +      A +            +   +   
Sbjct: 115 AHADLPSSLRQNPSYFKANPNGAPVMI-LALTSRTRTASQLYDLASNVLQQHLSQIQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L +       +       N                     
Sbjct: 174 EVEIGGSSLPAVRVEMNPLALYKFGIGFEDIRAALASANAHTP----------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G H      N      +   D+      +R        ++   +  + +  
Sbjct: 217 ---KGFIDQGDHRFTLDTNDQVHNAQAYRDLIVAYHDSRPVRLEDVASVRDSVEDLRNAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +       AI   +A  +   T +       +LRA                    + + 
Sbjct: 274 YVDGRPAVLAIIFAQAGANIINTNDQIRAKLPLLRAALPTDVDLGAFMDRSTTIRAALAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +  GLV++V+ + +   +  ++    +  ++I T   + ++G ++   S+  + 
Sbjct: 334 TQFTLVLSVGLVVLVVLLFLRSPRITIIPAIVVPASIITTFGAMKVMGYSIDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLF 478
           +  G  VD  I+V E I            +  +G      T   I  S I   +  ++L 
Sbjct: 394 ISTGFVVDDAIVVVENISRHMEAGMDRVQATLLGTREVAFTVMSITVSLIAVFLPILLLS 453

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G     FA+TM ++I+ISM  ++S+   M   +
Sbjct: 454 GVAGRLFHEFAMTMSITIVISMVLSLSLTPMMTARL 489



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 50/133 (37%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 +     +   I  T G   + G   +  ++ A+    G+ V+D +VV + +   
Sbjct: 354 RSPRITIIPAIVVPASIITTFGAMKVMGYSIDNLSLMALTISTGFVVDDAIVVVENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +     +           E   T+     + +A F+ +L ++   G +   FA+ M+  
Sbjct: 411 SRHMEAGMDRVQATLLGTREVAFTVMSITVSLIAVFLPILLLSGVAGRLFHEFAMTMSIT 470

Query: 805 IVVAASSSIFIAA 817
           IV++   S+ +  
Sbjct: 471 IVISMVLSLSLTP 483



 Score = 48.1 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 59/149 (39%), Gaps = 8/149 (5%)

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +Y+ +      +   L  ++TL       L     FG  F+L A+  V+ LIG    + +
Sbjct: 923  VYMTLGILYESYVHPLTILSTLPSAGVGALLALQFFGEAFSLIAMIGVILLIGIVKKNAI 982

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ D             +  D I  +        + T+ AA +  LP+     +G  +  
Sbjct: 983  MLVD--FAITAERDEGHTALDAIRMACLLRFRPIMMTTFAAALGALPLIFGHGYGSELRR 1040

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               I +  G++V+ + +++    + L++ 
Sbjct: 1041 PLGIAIVGGLLVSQALTLYTTPVVYLYLD 1069


>gi|192291222|ref|YP_001991827.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
 gi|192284971|gb|ACF01352.1| acriflavin resistance protein [Rhodopseudomonas palustris TIE-1]
          Length = 1035

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/561 (10%), Positives = 144/561 (25%), Gaps = 38/561 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G++           +   P+      +                 
Sbjct: 10  RRPVGTTLLAIGLFLVGMVA-----YAVLPVAALPNVDFPMIM---------VQASRPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +      +I L F+  R  ++ A  V   +  
Sbjct: 56  APSVMASTVAAPLERRLGEIAGLDQITSTSSLGNTRIQLQFSIGRNVDSAARDVQAAINA 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  D              + V     +      A             +I       
Sbjct: 116 AVSDLPTDLPTLPKFRKFNSAAAPVYI-LALTSKTMPASAIYDVADTVLAQRISQVPGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      +    +P  L     +T  +    +  N       F    L ++     
Sbjct: 175 DVTVSGADQPAVRIALNPVALSNAGISTDDVRTAIINANPVGPVGAFDGPRLTETLSTN- 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                 +T +                      +           
Sbjct: 234 -------------------PQMRTAEEFRSTVIKSDANGTVRLSDVATVSDATRNARTIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +   T++    L   L+          V     G    S   
Sbjct: 275 WYNKQPAVIIQITKQGDANVIETVDRVKALLPELKQWIPAGVEISVLADRTGTIRASVDD 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    A LV+ V+ + +      + A  S+ L +  T A + + G ++   S+  + 
Sbjct: 335 MQWTLLATAVLVMAVVLVFLRRLTPTIAAGVSVPLALAGTCAGMWISGFSINNLSLMALA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E +     +  +   +   G  +   T+   +++ + A   L F  
Sbjct: 395 IAVGFVVDDAIVMIENMYRNLERGMAPLPAAIEGARQIGFTVLSISLSLVAAFAPLIFMD 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  +R F++T+  +I++S   ++++   +    IR +          +    +   +
Sbjct: 455 GLIGRLLREFSLTLTFAIVVSTVVSLTVTPMICAHYIRAEASPKQTWFDRAVEGTLNRIV 514

Query: 539 AIQFMRARFWGVGISILFSIC 559
                  R       +   + 
Sbjct: 515 GFYAWTLRGVLSVPWLTIVVF 535



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 77/243 (31%), Gaps = 10/243 (4%)

Query: 570 NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
           N  +      +  V+ +       +            +       K   V +Q       
Sbjct: 233 NPQMRTAEEFRSTVIKSDANGTVRLSDVATVSDATRNARTIAWYNKQPAVIIQITKQGDA 292

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----RKGIVGVIISAIAMLIYIW 685
                ++ VK  + E+           V    +  +           +  + + M + + 
Sbjct: 293 NVIETVDRVKALLPELKQWIPAGVEISVLADRTGTIRASVDDMQWTLLATAVLVMAVVLV 352

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
              +    + A  ++ L +  T     + G   N  ++ A+   +G+ V+D +V+ + M 
Sbjct: 353 FLRRLTPTIAAGVSVPLALAGTCAGMWISGFSINNLSLMALAIAVGFVVDDAIVMIENMY 412

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMA 802
           +N+      ++      +   +     +  S++   +  P+    G +   +  F++ + 
Sbjct: 413 RNL---ERGMAPLPAAIEGARQIGFTVLSISLSLVAAFAPLIFMDGLIGRLLREFSLTLT 469

Query: 803 FGI 805
           F I
Sbjct: 470 FAI 472



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 82/248 (33%), Gaps = 10/248 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +   V LS V      L    ++                      A   +   V +
Sbjct: 776  VDSSSGDQVPLSAVVRAERGLAALAVAHTQGVPSTTVSFNTLPDVPLQEATANIQRAVDE 835

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITT 699
                     +           S     K  + ++ + IAM I + + ++     L  I+T
Sbjct: 836  LHMPEGIRGSFDGNAGDFRATSN----KQPLLILAAFIAMYIVLGVLYESLAHPLTIIST 891

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L       L    + G E ++ A   ++ LIG    + +++ D   +        +S  D
Sbjct: 892  LPSAGLGALLALLVTGTELSVIAFVGIIMLIGIVKKNGIMMVDFALE--AERERGLSSAD 949

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++        + T++AA  + +P+ V    G  +     I +  G+ V+   +++  
Sbjct: 950  AIFEACIVRFRPILMTTLAALFAAIPLVVAVGPGTELRRPLGITIIGGLFVSQVLTLYTT 1009

Query: 817  APILLFIY 824
              I L I 
Sbjct: 1010 PVIYLLID 1017


>gi|148359664|ref|YP_001250871.1| chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila str. Corby]
 gi|296107711|ref|YP_003619412.1| Chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila 2300/99 Alcoy]
 gi|148281437|gb|ABQ55525.1| Chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila str. Corby]
 gi|295649613|gb|ADG25460.1| Chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila 2300/99 Alcoy]
          Length = 1066

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/536 (15%), Positives = 160/536 (29%), Gaps = 54/536 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   ++ L  ++C +G        L Q  +D FP   P               +V++ 
Sbjct: 10  LHNRLLVLALTIILCLLGGYT-----LRQMPVDVFPEFAPP-------------QVVVQT 51

Query: 61  DEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    V   +    +   +                + IT+ F D          V 
Sbjct: 52  QAPGMATQDVETLITYPLESAINGTPGVASVRSKTSVGLSTITVVFDDKTDIYLNRQLVN 111

Query: 117 LFLQGVNSKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +Q V ++L       + L  T+     +  +  +           S   IR R+  +G
Sbjct: 112 ERIQQVVNRLPPGISPPVMLPVTSAVGWLLKYALVSHTASPETLRTISDWTIRPRLLALG 171

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                   +     + Q   + DP R+     T  ++                       
Sbjct: 172 ---GVASVVSLGGEVKQYQVQLDPKRMLAYGITVEEVRQALAT----------------- 211

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             GNQ +    V   G     +T             +     G                 
Sbjct: 212 --GNQNVPGAFVHQGGTEFVVSTIGRIKTLDDIKKTLIVVRKGVPVTVNNVATVAFGGEI 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              D        +   +       +   T +    LA + ++    I+LN    R     
Sbjct: 270 KRGDASFNAEHAVIGTVSKIYGADTLTTTRKVEQALADIKKSLPAGIELNTEVFRQANFI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +           A +V+ VLF+ ++  +   +   S+ ++ I+ + +L   G  +   
Sbjct: 330 ESAIHNLTKALIEGAVIVIAVLFLFLMNWRASFITFLSMPVSFIVGILVLHYFGFGINSM 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNIT 469
           ++ G+ + IG  VD  I+  E +    R N+           +        S++  + I 
Sbjct: 390 TLGGMAIAIGEVVDDGIITVENVVHRLRLNRLAENPLPAIEIVFDAVLEIRSSVVYATII 449

Query: 470 ALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             +  + +FF  G         AI    S+L S+  +I++V A+   ++  K  KS
Sbjct: 450 ISLVFLPIFFLSGIPERIFSPLAIAYIASVLGSLVVSITMVPALCYLLLARKTEKS 505



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 88/261 (33%), Gaps = 10/261 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V    PV ++ V +     +I                  +    D++  TR +E   
Sbjct: 246 LIVVRKGVPVTVNNVATVAFGGEIKRGDASFNAEHAVIGTVSKIYGADTLTTTRKVEQAL 305

Query: 640 KKITEIVPLSTIQNTEIV-GPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAI 697
             I + +P     NTE+          I      +I  + I + +       W  +    
Sbjct: 306 ADIKKSLPAGIELNTEVFRQANFIESAIHNLTKALIEGAVIVIAVLFLFLMNWRASFITF 365

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTT 753
            ++ +     +     FG   N   +  +   IG  V+D ++    V  R+R N +L   
Sbjct: 366 LSMPVSFIVGILVLHYFGFGINSMTLGGMAIAIGEVVDDGIITVENVVHRLRLN-RLAEN 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAAS 810
            +   +++  ++ E     VY ++   +  LP+    G     F   AI     ++ +  
Sbjct: 425 PLPAIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGIPERIFSPLAIAYIASVLGSLV 484

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            SI +   +   +   + + +
Sbjct: 485 VSITMVPALCYLLLARKTEKS 505



 Score = 38.1 bits (86), Expect = 6.9,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 93/265 (35%), Gaps = 10/265 (3%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            KG   + + A+   +    +  L ++    +  Q F   +  + R+     +   +    
Sbjct: 801  KGIQNMLIDAHGAANNQETKIPLRAVADIQLEPQPFAINRENVQRVLVIGFNVQGRDLGS 860

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL- 694
             + + +      +S      I          +   V ++  A+A+ I + +  K +    
Sbjct: 861  VIQEVQHQVKEKISLPSGYFIQYGGQFESQQQASRVIILFGALAVFIMLVLLHKAFGTFR 920

Query: 695  -GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
               +    L +    G  +LF    + ++ A+   +TL G +  + +++     +   L 
Sbjct: 921  EALLVMFNLPLALIGGVVSLFLASGDMSVAAMIGFITLFGIAARNGIILVSHYNQLRSLG 980

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
                    ++ +   + L   + T+  A ++++P+      G  +    A  +  G++ +
Sbjct: 981  RER---EQVVIQGTLDRLVPVLMTAATAALALIPLLWGSPAGKELQRPLAQVLLGGLLTS 1037

Query: 809  ASSSIFIAAPILLFIYDWRAKNARI 833
               ++ +   +      W  K  ++
Sbjct: 1038 TVLNMLVVPTVYNAFEIWHEKRRQL 1062


>gi|315127713|ref|YP_004069716.1| cation efflux system protein cusA [Pseudoalteromonas sp. SM9913]
 gi|315016227|gb|ADT69565.1| cation efflux system protein cusA [Pseudoalteromonas sp. SM9913]
          Length = 1054

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 166/607 (27%), Gaps = 40/607 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + V+L ++I   G L +L     ++ +D  P       I                   
Sbjct: 12  NRFFVLLITLIIAFGGLYSL----QKTPVDALPDLSDVQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F D         +V  +L  V 
Sbjct: 59  QVVQDQVTFPLTTAMLSVPGAQTVRGYSFFGDSYVYIIFDDDTDLYWARSRVLEYLSQVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S L    K  L    T      +              +           ++       + 
Sbjct: 119 SSLPDSAKPQLGPDATGVGWVYIY-ALTDKSGNHDLSQLRSIQDWFLKYELQTVPGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q   + DP +LR      + +       N      +  +            +
Sbjct: 178 AAVGGMVKQYQVQVDPDKLRAYDIPLSLIQIALQKGNKETGASVVEMAEAEYMVTATGYI 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +   +I                    + +  +E G              P        + 
Sbjct: 238 QSVSDIE------------------KIPLGINEQGTPLRIGDVATVNLGPQMRRGIAELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   +   +   +   TI         L++        +           +     
Sbjct: 280 GEGEVVGGVVVMRFGENAQQTINGVKEKLESLKSSLPEGVEIVPVYDRSKLIDRAVDNLW 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   +V IV    + + +  +VA  ++ L ++++  ++ + G    + S+ GI + 
Sbjct: 340 SKLLEELAVVAIVCVAFLFHLRSSIVAVVTLPLGILVSFIIMYMQGINANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG   D  I++ E + +   K    +++ +  +    S     +F S +   ++ + +F 
Sbjct: 400 IGAMTDGAIVMIENMHKHMEKTPLTDENRWQIVAKAASEVGPALFFSLLIITVSFLPVFI 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  S   AI++V  +M + IR K +             I  
Sbjct: 460 LEAQEGRMFSPLAYTKTYAMAASAGLAITLVPVLMGYFIRGKVVSEKKNPLNRLLIAIYM 519

Query: 537 CIAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
            +  Q M+  +   V   ++  +    +            +G +         + +   R
Sbjct: 520 PVLKQVMKFPKSTIVAAILVTIVGFWPVDKIGSEFIPPLDEGDLMYMPTTYPGISIGKAR 579

Query: 596 SNLESLQ 602
             L+   
Sbjct: 580 ELLQQTD 586



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/272 (12%), Positives = 85/272 (31%), Gaps = 16/272 (5%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   +    + +   + + + L  V           I  +N        + +     
Sbjct: 767  QDYRDSPEQLSRLPVVTPSGQRIALGDVADIRVENGPPGIKSENARLNGWTFIDIDGVDV 826

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             +  ++  + +            T         +   +L    ++ + ++ I +L+Y+  
Sbjct: 827  GTYVESAKIHLANNLKLPAGYSITWAGQYEYMERAKEKLTY--VLPLTLAIIVILLYLNF 884

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR- 745
            R     A+  I TL + +   L    L G  F++      + L G +V   V++   +  
Sbjct: 885  RAFSEVAII-IVTLPMAMIGGLWLMYLEGFNFSVAVGVGFIALAGVAVEIGVIMLVYLNQ 943

Query: 746  ---------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
                     +      +  +++D +       +   + T     I ++P+      G  +
Sbjct: 944  ALAELKEKAEERAEPISDDAYQDALLHGAGLRVRPVMMTVATIIIGLMPILYGTGTGSEI 1003

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   A PM  G+  A   ++ +   I   +  
Sbjct: 1004 MSRIAAPMVGGMTSAVLLTLIVLPVIYSIVKK 1035



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           ++ +A++  +   F    ++ A+ TL L I  +     + GI  N+ ++  +   IG   
Sbjct: 346 LAVVAIVC-VAFLFHLRSSIVAVVTLPLGILVSFIIMYMQGINANIMSLGGIAIAIGAMT 404

Query: 735 NDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +  +V+ + M K+M+    +   R  ++ K+ +E      ++ +   +S LP+ +     
Sbjct: 405 DGAIVMIENMHKHMEKTPLTDENRWQIVAKAASEVGPALFFSLLIITVSFLPVFILEAQE 464

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              F+ P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 465 GRMFS-PLAYTKTYAMAASAGLAITLVPVLMGYFIRGK 501


>gi|254473983|ref|ZP_05087376.1| RND transporter, HAE1/HME family, permease protein [Pseudovibrio
           sp. JE062]
 gi|211956872|gb|EEA92079.1| RND transporter, HAE1/HME family, permease protein [Pseudovibrio
           sp. JE062]
          Length = 1120

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 75/558 (13%), Positives = 163/558 (29%), Gaps = 45/558 (8%)

Query: 2   RNNPWLVILYSMICCIGL--LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           R       +  MI  +GL  +  LP        +   +                    L 
Sbjct: 10  RRPVLASTISLMILALGLRAIFLLPVLEYPKTENAVITIST----------------TLF 53

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + V GF+    +E  +          +     + IT++   +   +    ++   +
Sbjct: 54  GASAETVAGFITTPLEEAIAQANGIDYMTSTSASTVSTITVNLVLNYDADKALTEINTQI 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V  +L  + +  +L     + I  +      D +  +  + +  I+R    Q+   E 
Sbjct: 114 SSVLDQLPQETQNPVLTIQIGETIDAMYIGFTSDVIDRN--QLTDYIVRVVQPQVQAIEG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +     P +L     T   +S      +                 GN
Sbjct: 172 VQNAELYGEKRFAIRVWLYPEKLAAYGLTGTDVSNALARNDFIS------------GVGN 219

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                 +VE++          F          ++  + G           +         
Sbjct: 220 TKGQMVQVELTANTNLTDVEEFRE--------LAVAQNGGAIIRLRDVGRVVLGSEDYDQ 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             + +               +    +E    L   ++A   P     +   +      + 
Sbjct: 272 AVLYSGKPAVYLGVQAAPSANVLAMLEEVRQLVPNVQAAMPPGLEARIVYDSGLFINAAI 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                       +V  V+F+ +   +   +   +I L++I T  ++ +LG ++ L ++  
Sbjct: 332 DEVISALVEALVIVTFVVFLFIGSPRTVAIPVIAIPLSLIGTFFIMLVLGYSINLLTLLA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IGL VD  I+V E +     +  + F +           I    +  +     + F
Sbjct: 392 LVLAIGLVVDDAIIVVEDVERHISEGSTPFRAAVQAGQDLGRPIIAMTVVLVAVYAPIGF 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            G   G     FA T+  S+ IS   A+++   M   I++ +  +              D
Sbjct: 452 QGGLTGALFTEFAFTVVGSVTISAIVALTLTPMMSSKILKARSQE--STGWDDALTRTVD 509

Query: 537 CIAIQFMRARFWGVGISI 554
            I  +F +     +  S+
Sbjct: 510 DIYDRFRKRYLRALEASL 527



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 94/252 (37%), Gaps = 13/252 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +  V LS V +    +    I                +    + A   + ++  +++ 
Sbjct: 854  PQSTVVPLSSVATLDMQVTPEFIPHFQQQNSMTLSGVPSFGVPLAEALQVLQQIAAEELP 913

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLIL 702
            E   +   Q +     + S  ++         + + + + +  +F+ +   +  + ++ +
Sbjct: 914  EGYDVDYAQQSRQFEQESSGFVVTFAF-----ALLIIFLTLAAQFESYRDPIIILVSVPM 968

Query: 703  DITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             I   L F    L G   N+     ++TL+G      +++ +  R+         + R+ 
Sbjct: 969  SIAGALFFINIGLGGASINIYTQVGIITLMGLISKHGILIVEVARE--LQENQGATKREA 1026

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +  ++   L   + T+ A  + V+P+ +    G +   +  + +A G+ +    ++F+  
Sbjct: 1027 VVGALQIRLRAILMTTAAMVLGVIPLVLASGAGAASRFNMGLVIATGLSIGTLFTLFVVP 1086

Query: 818  PILLFIYDWRAK 829
             + + I   R+K
Sbjct: 1087 NVYMLIAQDRSK 1098



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/230 (12%), Positives = 73/230 (31%), Gaps = 9/230 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V   +   +  D +         +L        + +A    +  +   +   +P     
Sbjct: 258 DVGRVVLGSEDYDQAVLYSGKPAVYLGVQAAPSANVLAMLEEVRQLVPNVQAAMPPGLEA 317

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                        I + I  ++ + + +  +              +  + L +  T    
Sbjct: 318 RIVYDSGLFINAAIDEVISALVEALVIVTFVVFLFIGSPRTVAIPVIAIPLSLIGTFFIM 377

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   NL  + A++  IG  V+D ++V + +     +   S  FR  +     + LGR
Sbjct: 378 LVLGYSINLLTLLALVLAIGLVVDDAIIVVEDV--ERHISEGSTPFRAAVQAG--QDLGR 433

Query: 772 SVYTSMAAFISVLPMAVWGGS----VIGSFAIPMAFGIVVAASSSIFIAA 817
            +       ++V     + G     +   FA  +   + ++A  ++ +  
Sbjct: 434 PIIAMTVVLVAVYAPIGFQGGLTGALFTEFAFTVVGSVTISAIVALTLTP 483


>gi|237746531|ref|ZP_04577011.1| drug efflux pump transmembrane protein [Oxalobacter formigenes
           HOxBLS]
 gi|229377882|gb|EEO27973.1| drug efflux pump transmembrane protein [Oxalobacter formigenes
           HOxBLS]
          Length = 1033

 Score =  133 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/531 (10%), Positives = 141/531 (26%), Gaps = 42/531 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                ++    I   GL+           +   P                   +V     
Sbjct: 10  RPVATILFMVAILLSGLVA-----WKLLPVSALPEVDYPT-----------IQVVTYYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +     +        +  +  + +TL F  S   +    +V   + 
Sbjct: 54  ASPEVVASTITAPLERQFGQMPGLEQMASASSEGVSVVTLQFTLSLTLDVAEQEVQAAIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             N+ L  D     +        + +L+   +        +       +   ++      
Sbjct: 114 AANNLLPPDLPNPPVYNKVNPADTPILT-IAVTSPTLTITKLEDLADTRIAQKLSQVPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  +     L     T   +       N ++    F       +    
Sbjct: 173 GLVSISGGQRPAVRIQAHSKALAARGLTLENVRTAVAAANVNQAKGSFDGPLQASTIDGN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   E   I +                                  ++          
Sbjct: 233 DQLKSAAEFENIIIA--------------------YRDGSPVRLKDIAHVIDGAENARLS 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +     +    L   L+          +          S S
Sbjct: 273 AWAGDKPAVILTVQRQPGANVIAVADRIKELLPPLQNSLPAAVDVDILSDRTTTIRASVS 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   LV++V+F+ +      L+   ++ L+++ T  ++ L G ++   ++  +
Sbjct: 333 DVEHELVMAIALVVLVVFLFLRNLTATLIPAVAVPLSLVGTFGVMYLAGFSINNLTLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I++ E I            +   G  +   TI    ++ +   + L F 
Sbjct: 393 TIATGFVVDDAIVMLENIARYIEAGDKPMEAALKGSKQIGFTIISLTVSLIAVLIPLLFM 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           G   G   R FA+T+ +SILIS   ++++   +   ++++   +       
Sbjct: 453 GDVIGRLFREFAVTLSVSILISAVISLTLTPMISARLLKHIPEEKQGRFYH 503



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + L +  T G   L G   N   + A+    G+ V+D +V+ + +    +
Sbjct: 356 LTATLIPAVAVPLSLVGTFGVMYLAGFSINNLTLMALTIATGFVVDDAIVMLENI---AR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                    +   K   +     +  +++    ++P+   G   G +   FA+ ++  I+
Sbjct: 413 YIEAGDKPMEAALKGSKQIGFTIISLTVSLIAVLIPLLFMGDVIGRLFREFAVTLSVSIL 472

Query: 807 VAASSSIFIAAPI 819
           ++A  S+ +   I
Sbjct: 473 ISAVISLTLTPMI 485



 Score = 44.3 bits (102), Expect = 0.081,   Method: Composition-based stats.
 Identities = 32/202 (15%), Positives = 80/202 (39%), Gaps = 6/202 (2%)

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFA 693
            +  + +    +    +IQ          +  +   +  ++ + + M I + I ++ +   
Sbjct: 822  VSAILEAEEALQMPQSIQTQFQGAAMAFQSSLSSTLWLIVAAIVTMYIVLGILYESYIHP 881

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            +  ++TL       L    + G + ++ A+  ++ LIG    + +++ D     +     
Sbjct: 882  ITILSTLPSAGIGALLALMITGNDLSVIAIIGIILLIGIVKKNAIMMID--FALVAEREE 939

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
             +S RD I ++        + T+MAA +  LP+ +    G  +     I M  G++V+  
Sbjct: 940  GLSPRDAIYEACLLRFRPIMMTTMAALLGALPLMLATGIGSELRNPLGITMVGGLLVSQV 999

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             ++F    I L+      +  +
Sbjct: 1000 LTLFTTPVIYLYFDRLARRVEK 1021


>gi|54298293|ref|YP_124662.1| chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila str. Paris]
 gi|53752078|emb|CAH13504.1| Chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila str. Paris]
          Length = 1071

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/535 (14%), Positives = 157/535 (29%), Gaps = 54/535 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N P ++ L  ++C +G        L Q  +D FP   P               +V++ 
Sbjct: 10  LHNRPLILALTIILCLLGGYT-----LKQMPVDVFPEFAPP-------------QVVVQT 51

Query: 61  DEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    V   +    +   +                + IT+ F D          V 
Sbjct: 52  QAPGMATQDVETLITYPLESAINGTPGVVSVRSKTSVGLSTITVVFDDQTDIYRNRQLVN 111

Query: 117 LFLQGVNSKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +Q V ++L    +  + L  T+     +  +  +  +        S   IR RI  +G
Sbjct: 112 ERIQQVVNRLPPGVESPIMLPVTSAVGWLVKYALVSRTESPETLRTISDWTIRPRILALG 171

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                   +     + Q      P R+     +   +       N +  G          
Sbjct: 172 ---GVASVVSLGGEVKQYQVRLIPERMLAYRISVEDVRQALTSANQNVPGAFVHQA---- 224

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                          G     +T             +     G         +       
Sbjct: 225 ---------------GTEFVVSTLGRIKTLKDIKKTLIVVRNGVPITMNNVANVAFGGEI 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              DG   T   +   I       +   T +    LA + ++    + L     R     
Sbjct: 270 KRGDGAYNTQNAVIGTISKAYGADTVTTTEKVEKALAEIKKSLPHDVTLMTNVFRQTSFI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +           A +V+ VLF+ ++  +   +   S+ ++ ++ + +L   G  +   
Sbjct: 330 ESAIHNLTRALLEGAVIVIAVLFVFLMNWRASFITFLSMPVSFVVGILVLHYFGIGINSM 389

Query: 416 SIAGIVLGIGLAVDSNILVNER------IREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ++ G+ + IG  VD  I+  E       I  +          +        S++  + I 
Sbjct: 390 TLGGMAIAIGEVVDDGIITVENVVHRLRINRQEAHPLPTIQVVFDAVLEIRSSVVYATII 449

Query: 470 ALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             +  + +FF  G         AI    S+L S+  +I++V A+  +++   + K
Sbjct: 450 ISLVFLPIFFLSGIAEHIFSPLAIAYIASVLGSLVVSITMVPALCYWLLVRGQEK 504



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 70/222 (31%), Gaps = 9/222 (4%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-IS 676
            +   Y         +V + + +    +    T+              I      ++  +
Sbjct: 285 TISKAYGADTVTTTEKVEKALAEIKKSLPHDVTLMTNVFRQTSFIESAIHNLTRALLEGA 344

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            I + +       W  +     ++ +     +     FGI  N   +  +   IG  V+D
Sbjct: 345 VIVIAVLFVFLMNWRASFITFLSMPVSFVVGILVLHYFGIGINSMTLGGMAIAIGEVVDD 404

Query: 737 KVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++    V  R+R N +     +    ++  ++ E     VY ++   +  LP+    G 
Sbjct: 405 GIITVENVVHRLRIN-RQEAHPLPTIQVVFDAVLEIRSSVVYATIIISLVFLPIFFLSGI 463

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               F   AI     ++ +   SI +   +  ++     +  
Sbjct: 464 AEHIFSPLAIAYIASVLGSLVVSITMVPALCYWLLVRGQEKQ 505



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 91/289 (31%), Gaps = 11/289 (3%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
            V +S +        L+      G D    IQ  ++    V  + +               
Sbjct: 774  VSVSSVLEGQRTFDLYLRMDKPGRDSVKNIQNMLIDAHGVGQNTITQIPLRAVAEIALEP 833

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                     V+       +V    +  ++ +   E+     +     +      E  ++ 
Sbjct: 834  QPFAINRENVQRLLVISFNVEGRDLGSVIAEVQQEVQEKIKLPTGYFIQYGGQFESQQQA 893

Query: 670  IVGVIISAIAMLIYIWIRFKWYFAL---GAITTLILDITKTLGFFALF--GIEFNLTAVA 724
               +++    ++  + I     F       +    L +    G  +LF    E ++ A+ 
Sbjct: 894  SRVILVFGGLVIFVMLILLHKAFGTFREALLVMFNLPLALIGGVISLFVVSGEMSVAAMI 953

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
              +TL G +  + +++        +L     +   ++     + L   + T+  A + ++
Sbjct: 954  GFITLFGIAARNGIILVSHYN---QLRLQGKTREQVVIDGTMDRLVPVLMTAATAALGLI 1010

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+      G  +    A  +  G+  +   ++F+   +   I  WR + 
Sbjct: 1011 PLLWGSPAGKELERPLAQVLLGGLFTSTVLNMFVVPTVYNAIEVWREQR 1059


>gi|261253156|ref|ZP_05945729.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio orientalis CIP
           102891]
 gi|260936547|gb|EEX92536.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio orientalis CIP
           102891]
          Length = 1047

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/632 (11%), Positives = 168/632 (26%), Gaps = 40/632 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N +LV++ ++    G L ++ N    + +D  P       I                  
Sbjct: 11  SNRFLVLVATIALVFGGLYSIKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    K  L    T                     E           ++   +   +
Sbjct: 118 APNLPPSAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYDLTLQQVNMAIQNGNQESGASVVEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   E G         D    P        +
Sbjct: 237 LSGIEDI------------------QALPLKVTEQGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I         L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVISNVKQKLGELQNSLPEGVEIVATYDRSTLIDSAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLTEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENR----KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +        +++ +  +          +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLNDKNRWQVIGDAAQEVGPPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AI++V  +M + IR   +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAASAGLAITLVPVLMGYFIRGNVLPEHKNPINKGLVSLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID-FKGGIQLGVLANRPVDLSVV 594
             +    ++     + ++++    +       G  +     +G +         + +   
Sbjct: 519 KPLLNLSLKYPKSVISLALVLMASAYYPTTKMGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
           R  L+      ++    +     + R +    
Sbjct: 579 REVLQQTNKLIMTVPEVETAWGKIGRAETATD 610



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/249 (12%), Positives = 77/249 (30%), Gaps = 16/249 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++  ++  D               +          + V E  +    ++V  +      
Sbjct: 792  ADVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGSYVEEARQTVAEQLVLPAGYSLAW 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFAL 713
                +       +  V V I+   +++ ++  F+       I  L L +    G      
Sbjct: 852  SGQYEYMERAKERLGVVVPITIAIIMLLLYFSFR-RVGEVMIIMLTLPLAMVGGLWLMHY 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVV---------YDRMR-KNMKLYTTSISFRDLIDK 763
                F++      + L G +V   V++         Y +++ +  +    +    D I +
Sbjct: 911  LNYNFSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHYTKLKAQEGERPLEASDLTDSIRE 970

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                 +   + T +   I ++P+      G  V+   A PM  G+  A   ++ +   I 
Sbjct: 971  GAGLRVRPVMMTVLTVIIGLIPIMYGEGTGSEVMQRIAAPMIGGMASALMLTLLVLPAIF 1030

Query: 821  LFIYDWRAK 829
                    K
Sbjct: 1031 KLWKQRELK 1039



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 59/159 (37%), Gaps = 11/159 (6%)

Query: 677 AIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I + I      F    +L    +L + I          GI  N+ ++  +   IG  V+
Sbjct: 346 FIVVAIVCALFLFHIRSSLVIALSLPVGILTAFIVMHWQGINANIMSLGGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
             +V+     +N+  +       D     +I  +  E      ++ +   +S +P+    
Sbjct: 406 GAIVMI----ENVHKHIERTPLNDKNRWQVIGDAAQEVGPPLFFSLLIITLSFVPVFALE 461

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           G     F+ P+AF    A ++S  +A  ++  +  +  +
Sbjct: 462 GQEGKMFS-PLAFTKTYAMAASAGLAITLVPVLMGYFIR 499


>gi|237752422|ref|ZP_04582902.1| acriflavin resistance protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375911|gb|EEO26002.1| acriflavin resistance protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 1063

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/560 (11%), Positives = 152/560 (27%), Gaps = 31/560 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++   ++   G+L      L        P                  +       
Sbjct: 8   RPVVVIVGMILLSLFGILS-----LRTMPYQLTPQVTRPVI---------SVNTTWSGAT 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +++   +             +  +TL F            V+  L  V
Sbjct: 54  PYEIEREILERQEQVLKGIDNLETMEGFANSGRANVTLEFKIGTDLTKAMLDVSNKLNEV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                    + ++  T E    +V              EQ        I      +   +
Sbjct: 114 KGY-PDAIDRPVIRATGEDTSPVVRMMLVSLDDSVRVREQRTFFNENVIQYFERIDGVAE 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    D  +L       A ++      N +                    
Sbjct: 173 VNFPGGDDREMHIIIDERKLAIYQLDIASVANVLDKQNVNLSAGSLDYGRKSYRVRTVGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            ++  +I  + +          +   +V   F             +N         D ++
Sbjct: 233 FKNPQDILDVVIWSDGVKRVKISDVAMVKEGF-------------ENKTTVSYYRGDEKI 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
               ++    P+  A +                                      + ++ 
Sbjct: 280 SKEALMVAIKPAADANVLELTNAVEVVFDTLNNGILKEKGLKLEWTNDQRDYIEQAIALV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG   + A L   VLF+ +      L+   ++ L+V+ T  +++ L  TL + S+AGI  
Sbjct: 340 KGNIIVGAFLACGVLFVFLRSLTSTLIIAIAMPLSVLGTFIVMAFLNRTLNVVSLAGISF 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
            +G+ VDS I+V E I    +  ++   ++  G       +  S +T +   + +     
Sbjct: 400 AVGMLVDSAIVVLENIDRHRKMQKNAMQAVIDGTKEVIGGLIASVLTTVAIFIPILNIQE 459

Query: 481 -GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R  AI    ++  S+F +I ++  +     +    K   +        I +  +
Sbjct: 460 EAGQLFRDIAIAASSAVSFSLFVSIIVIPTLSYQSSKLLGTKKSILKENKILQEIYNGGS 519

Query: 540 IQFMRARFWGVGISILFSIC 559
              ++ R +G          
Sbjct: 520 SFSLKIREFGQWCVDWIMYF 539



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 91/262 (34%), Gaps = 13/262 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       + +S +           I     +      +          +   V   + 
Sbjct: 805  SIYTSTAGIIPISTLADLKLEYGTNQIRHYERNRTITLTLSPPANITIQESMELVNGEIL 864

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
             ++ E   L     +         ++    I+G +++   + + +   ++ + + L  + 
Sbjct: 865  TRLKESGALGNNSISFSGTADALTKIKDSLILGFVLAVFIIYLLMAALYEDFVYPLIILF 924

Query: 699  TLILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            ++ L +         +  F L     ++  +   + L+G  VN+ +++  +   N++LY 
Sbjct: 925  SVPLAVGGGFLGLWLVNVF-LVYQPLDVLTMLGFIILVGIVVNNAILIVYQSLHNVRLYE 983

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +  +  I +++   +     +++ +   +LP+ V    G  +       +  G+  + 
Sbjct: 984  --MDAQSGILEAVRVRIRPIYMSTLTSLFGMLPLVVAPGAGSEIYRGLGAVILGGLGFST 1041

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
              SIF+   +L F      KNA
Sbjct: 1042 VLSIFLIPCLLSFFIKRELKNA 1063



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 65/195 (33%), Gaps = 7/195 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           + A   V + +   I +   L      +          + KG + V       ++++++R
Sbjct: 300 TNAVEVVFDTLNNGILKEKGLKLEWTNDQRDYIEQAIALVKGNIIVGAFLACGVLFVFLR 359

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + L +  T    A      N+ ++A +   +G  V+  +VV + +   
Sbjct: 360 -SLTSTLIIAIAMPLSVLGTFIVMAFLNRTLNVVSLAGISFAVGMLVDSAIVVLENI--- 415

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            +      +    +     E +G  + + +      +P+       G +    AI  +  
Sbjct: 416 DRHRKMQKNAMQAVIDGTKEVIGGLIASVLTTVAIFIPILNIQEEAGQLFRDIAIAASSA 475

Query: 805 IVVAASSSIFIAAPI 819
           +  +   SI +   +
Sbjct: 476 VSFSLFVSIIVIPTL 490


>gi|313891692|ref|ZP_07825299.1| export membrane protein SecD [Dialister microaerophilus UPII 345-E]
 gi|313119970|gb|EFR43155.1| export membrane protein SecD [Dialister microaerophilus UPII 345-E]
          Length = 415

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 152/401 (37%), Positives = 235/401 (58%), Gaps = 27/401 (6%)

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  L       I +       ++V + AI Q + I+++RI+++G++E  IQR G +RI+I
Sbjct: 40  RQGLDLQGGTHIVMQAEDTPQNKVTNEAIGQVINIMQKRINEMGLTEPIIQREGGNRIII 99

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPGE+DP +  + +G TA + F                                V+++G
Sbjct: 100 ELPGEKDPKKAIETIGKTAVLEFKDED--------------------------GNVKLTG 133

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             L  A          P+V + F E GA +F  +T  NIG+ + + LDG +LT PV+N+A
Sbjct: 134 EDLKNAKEQVGQNK-SPLVALEFTENGATKFANLTAANIGRHIGIYLDGEMLTNPVVNEA 192

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           I  G A ISG  T+E A  LA +LR+G+LP+K++++E R VG  LG DS  K   A   G
Sbjct: 193 ITGGSAVISGQRTLEEAKDLAILLRSGALPVKMSVLEVRTVGPSLGQDSKDKSVTAFTIG 252

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           L LIVLFM+ +Y   G VA+ ++ + V++ L +LSLL ATLTLPSIAG++L IG+AVD+N
Sbjct: 253 LSLIVLFMLCMYRVAGFVANVALLVYVLILLGILSLLNATLTLPSIAGVILSIGMAVDAN 312

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           IL+ ER +EE    + +  ++  GF RA++TIFD+N+T +I + +LFF G G V+GFA +
Sbjct: 313 ILIFERFKEEIESGKVLRMAIHSGFKRAFTTIFDANMTVIITSCILFFLGSGTVKGFAFS 372

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           +GL + ISMFTAI++ R +++ +I    + +       R +
Sbjct: 373 LGLGVAISMFTAITVSRTLLMMLIDASWIHNPWWFGGKRGY 413



 Score =  117 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 71/168 (42%), Gaps = 4/168 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP + ++   K +    I    +++++   ++      A   L++ +   LG  +L  
Sbjct: 232 TVGPSLGQDSKDKSVTAFTIGLSLIVLFMLCMYRV-AGFVANVALLVYVLILLGILSLLN 290

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L ++A V+  IG +V+  +++++R ++ +    +    R  I              
Sbjct: 291 ATLTLPSIAGVILSIGMAVDANILIFERFKEEI---ESGKVLRMAIHSGFKRAFTTIFDA 347

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +M   I+   +   G   +  FA  +  G+ ++  ++I ++  +L+ +
Sbjct: 348 NMTVIITSCILFFLGSGTVKGFAFSLGLGVAISMFTAITVSRTLLMML 395



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 17/133 (12%), Positives = 43/133 (32%), Gaps = 17/133 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           +          +I  I +       L                I  GLDL+GG+H+V++  
Sbjct: 10  KKGALARFFGVIIVIIAVFAFTVGRL-------------AGNIRQGLDLQGGTHIVMQAE 56

Query: 61  DED--DFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTL 117
           D       N  +    + ++  + + G+    +++   N+I +     +  +   + +  
Sbjct: 57  DTPQNKVTNEAIGQVINIMQKRINEMGLTEPIIQREGGNRIIIELPGEKDPKKAIETIGK 116

Query: 118 FLQGVNSKLNVDP 130
                    + + 
Sbjct: 117 TAVLEFKDEDGNV 129


>gi|325972707|ref|YP_004248898.1| protein-export membrane protein SecD [Spirochaeta sp. Buddy]
 gi|324027945|gb|ADY14704.1| protein-export membrane protein SecD [Spirochaeta sp. Buddy]
          Length = 575

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 135/414 (32%), Positives = 218/414 (52%), Gaps = 34/414 (8%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            +     ++ AI Q +EI+ +RIDQ G+SE  I+  GS +ILI++PG  DP R+   L  
Sbjct: 164 SSASSAEVAEAIRQDIEILEKRIDQFGVSEPVIRLQGSDQILIEVPGAADPERVNSFLRG 223

Query: 209 TAKMSFHKVLPN--------------------------------NSKKGFMFGVRFLRDS 236
              + F  V                                       G+     +  D 
Sbjct: 224 KGSLVFKMVDTALTAELDAYYKANPSEVYTDTGALKQPSFLPAGKIAAGYYVSDSYGIDE 283

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
             +  ++E++V + GIHL  AT   D  T +PVV+   D +G   F+++T  ++G  +AV
Sbjct: 284 LESYVVIEEEVGLDGIHLESATTATDGITGRPVVNFQLDSLGGDIFYKLTSTHVGDTMAV 343

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           V+DG+V     IN+ I    +     F  E A  LA +LR  +LPI+L +  ++ VGA L
Sbjct: 344 VMDGKVKAMATINEGI--RNSVQISGFNAEEASDLAIVLRTAALPIELVVSSQQAVGATL 401

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G D++  G  AI  GL L+VL M   Y   GLVAD ++  N+ + +++LS    TLTL S
Sbjct: 402 GEDAVNAGVKAIAIGLALVVLLMFAYYHVSGLVADLALLFNLFIMISVLSAFNFTLTLTS 461

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +AG++L +G+AVD+N+++ ERI+EE R  +S   ++  GF +A+ T+ D+NIT +IA +V
Sbjct: 462 VAGLILTLGMAVDTNVIIFERIKEERRLGKSDIAAIKAGFDKAFWTVMDANITTIIAALV 521

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
           L   G  +V+GFA T+ + I+ S+FTA+ +   +    + + + K + I+    
Sbjct: 522 LSQLGSSSVKGFANTLAIGIVSSVFTALFVSHLIFDATVAHHEGKKLHISWRKN 575



 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 88/209 (42%), Gaps = 4/209 (1%)

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                   N  +R   Q     A+      +  +   +     + + + VG  +  + + 
Sbjct: 348 KVKAMATINEGIRNSVQISGFNAEEASDLAIVLRTAALPIELVVSSQQAVGATLGEDAVN 407

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            G+  + I    +++ ++  +     L A   L+ ++   +   + F     LT+VA ++
Sbjct: 408 AGVKAIAIGLALVVLLMFAYYHVS-GLVADLALLFNLFIMISVLSAFNFTLTLTSVAGLI 466

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             +G +V+  V++++R+++  +L     S    I    ++     +  ++   I+ L ++
Sbjct: 467 LTLGMAVDTNVIIFERIKEERRL---GKSDIAAIKAGFDKAFWTVMDANITTIIAALVLS 523

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             G S +  FA  +A GIV +  +++F++
Sbjct: 524 QLGSSSVKGFANTLAIGIVSSVFTALFVS 552


>gi|118617349|ref|YP_905681.1| preprotein translocase subunit SecD [Mycobacterium ulcerans Agy99]
 gi|118569459|gb|ABL04210.1| protein-export membrane protein SecD [Mycobacterium ulcerans Agy99]
          Length = 615

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 125/606 (20%), Positives = 223/606 (36%), Gaps = 77/606 (12%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +   ++  IG+ + +     +                LG+DL+GG+ + L     D  
Sbjct: 12  RYLSVFLVLLIGVYLLVFLTGDKKAAP-----------KLGIDLQGGTRVTLTARTPDGS 60

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQG 121
                 L      + + +   G+    +    + + ++    D     N+     L+++ 
Sbjct: 61  APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGNEARNLGQTARLYIRP 120

Query: 122 VNSKLNV---------------DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
           V + +                                    S     Q  + A  QS   
Sbjct: 121 VMNSMPAQPAAQEPQQEPQQPGGTAPAPGGPAPNAGQPPESSAPASPQSGAPAAPQSGTP 180

Query: 167 IR---------------------------------------QRIDQIGISESTIQRLGSH 187
            R                                               +    ++  + 
Sbjct: 181 GRPGAQPRPYPQDPPPSPAPAPSPAPTGSPAPPATGAQQPADLPPGEEPALPDPRKDLAE 240

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI  +    Q  ++  Q++    + +        +             +D     +    
Sbjct: 241 RIAQEKKWRQSTNQYIQMVALQFEATQCGKDDILAGNDDPKLPLVTCSTDHKTAYLLAPS 300

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            ISG  +  AT+  D ++   VVD+ F    A  + + T  +IG   A  LD +V++AP 
Sbjct: 301 IISGDQIQNATSGMDQRSIGYVVDLQFKSQAANTWADYTAAHIGTQTAFTLDSQVVSAPQ 360

Query: 308 INQAIPSGKAQISGN---FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           I +AIP G+ QISG    F+  TA  LA +L+ GSLP+     E + V A LG  S+  G
Sbjct: 361 ILEAIPGGRTQISGGEPPFSASTARQLANVLKYGSLPLSFESSEAQTVSATLGLTSLRAG 420

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGI 420
             A   GL L++L+ ++ Y   GL+   S+  +  +  A+L LL      TL L  IAG+
Sbjct: 421 LIAGAIGLALVLLYSLLYYRVLGLLTALSLIASGAMVFAILVLLGRYINYTLDLAGIAGL 480

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++GIG   DS ++  ERI++E R+ +S   ++  G++RA  TI   N    +A  VL+F 
Sbjct: 481 IIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFL 540

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
             G V+GFA T+GL+ ++ +     +   ++    +  ++     N L     +      
Sbjct: 541 AIGQVKGFAFTLGLTTILDIVVVFLVTWPLVYLASKSPRLAKPAYNGLGAVQQVARERRA 600

Query: 541 QFMRAR 546
              R R
Sbjct: 601 SDSRTR 606



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 24/144 (16%)

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDK--------------------VVVYDRMRKNM 748
           G      +  +   V A+L L+G  +N                      VV ++R++  +
Sbjct: 443 GLLTALSLIASGAMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEI 502

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      SFR  + +         V  +   F++   +       +  FA  +    ++ 
Sbjct: 503 RE---GRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILD 559

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
                 +  P++  +     + A+
Sbjct: 560 IVVVFLVTWPLVY-LASKSPRLAK 582


>gi|312113276|ref|YP_004010872.1| acriflavin resistance protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311218405|gb|ADP69773.1| acriflavin resistance protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 1010

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/515 (13%), Positives = 151/515 (29%), Gaps = 39/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  +I   G+     N      + ++P+ +    I++     G +        
Sbjct: 10  RPILSVVVSLLILLAGI-----NAFFSLPVRQYPN-LQSATITVDTSFPGATQ------- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D + GF+     +  +          +    Q++I      +   +    +V   +Q V
Sbjct: 57  -DVMQGFVTTPIAQAIATASGIEYLTSTTTMGQSQIKAKLVLNADSDRAMTEVLSKVQQV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       ++   T+   ++       D +     + +  + R     I   +    
Sbjct: 116 KYRLPQGAFDPVVTKITDGASAVQYIAFVSDTLT--IPQITDFVTRVGQPLITSVKGVAS 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +    + +    DP +L     T   ++      N              D       
Sbjct: 174 ADFAGAQALAMRVWIDPVKLAARNLTAGDIATALRANNVQAAPGQLE----SDRSITSIT 229

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G                    +      +         ++            
Sbjct: 230 ATTDASSVGDFRE----------------MVIKTSASGLVRLRDVADVEIGSQNQKTLGW 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            +         S     +    +     L   +++ + P      +         S    
Sbjct: 274 ASGRRAVYLKISPTPDGNPLEIVAATKALIPSMQSVAPPGLKVENQFDVAHFVHASIDEV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +V++V+F+ +   +  +V   +I L+++ T AL+   G +L L ++  +VL
Sbjct: 334 LHTLVEAVVIVVVVIFLFLGSLRAVVVPVVTIPLSLVGTAALMLAFGFSLNLLTLLAMVL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E I     + +S   +   G       +    IT       +     
Sbjct: 394 AIGLVVDDAIVVVENIHRHIAEGRSPIDAALAGAREIIGPVIAMTITLAAVYAPIGLMEG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA T+  S+++S   A+++   M   +
Sbjct: 454 LTGSLFREFAFTLAGSVVVSGVVALTLSPMMCSRL 488



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 60/161 (37%), Gaps = 6/161 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +++ +   L  + T+ L +   L    L     N+     ++TLIG 
Sbjct: 850  GFALIVIFLVLAAQYESFRDPLVILVTVPLAVCGALVPLWLGYTTLNIYTQIGLVTLIGL 909

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++      N          R+ I K+    +   + T+ A    ++P+      
Sbjct: 910  ISKHGILMVA--FANDIQRREGAGKREAILKAAMVRMRPILMTTAAMVTGLVPLLFATGA 967

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G +   +  I +  G+++    ++F+     + +   R + 
Sbjct: 968  GAASRFAIGIVVVMGMLIGTLFTLFVLPTFYVLLGSERMQR 1008



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 43/116 (37%), Gaps = 6/116 (5%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +  + T+ L +  T      FG   NL  + A++  IG  V+D +VV + +    
Sbjct: 354 SLRAVVVPVVTIPLSLVGTAALMLAFGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH--- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
           +      S  D       E +G  +  ++       P+ +     GS+   FA  +
Sbjct: 411 RHIAEGRSPIDAALAGAREIIGPVIAMTITLAAVYAPIGLMEGLTGSLFREFAFTL 466


>gi|254283570|ref|ZP_04958538.1| multidrug efflux RND transporter [gamma proteobacterium NOR51-B]
 gi|219679773|gb|EED36122.1| multidrug efflux RND transporter [gamma proteobacterium NOR51-B]
          Length = 1039

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/690 (11%), Positives = 179/690 (25%), Gaps = 59/690 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+L   +   G+  A+        +  FP                 + L +    
Sbjct: 23  RPVVAVVLSFGLLLAGIKSAI-----DLPVIEFPVIES-------------TSLEIRTAY 64

Query: 63  DDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +        + +   +              + +T+    +    +   +++  
Sbjct: 65  PGASAETVRGFVSEPIERVAGSIPGVDYVESLTTSGSSLVTVWLELNESSTDALAELSTR 124

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L  +  +L    +   +                         E +  + R  + ++   E
Sbjct: 125 LSQIRFELPDGTEDPAIEVVRADSPYASYYLAIAIPENRTPAEVTDLMQRDVLPRLTAVE 184

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           +  + L +  I   +    DP R+  L    + +       N                  
Sbjct: 185 NVQRALNTG-IPAAMRIWLDPLRMAALDVDASDVQNTLRRNNVIGTVGRTKNS------- 236

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                                N   +  +    +                 I      + 
Sbjct: 237 -------------DQQIDLQINTTARNAEDFARMLVKRENGVEVRLGDVARIEPGSMEIS 283

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                T   +           S     +        +           +          +
Sbjct: 284 LLGRFTHDKVIWVGIYPVPGSSEIEVADGIYEAVEDINKTLPDDLEIFIGYDVTDYMRNA 343

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            S    T      LV +V+  ++   +  LV   +I ++++   A + LLG +L L +I 
Sbjct: 344 LSEIAITLGETIILVGLVVVALMGSFRTALVPLLTIPISLLGATAAMMLLGFSLNLLTIL 403

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IVL +GL VD  I+V E +    R+  S   +      R  S I    +T  +    + 
Sbjct: 404 AIVLSVGLVVDDAIVVVENVARNLREGMSRKEAAMASSRRLLSPIIAMTLTLAVVYAPIG 463

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-----KSIDINPLSR 530
           F     G   R FA T+ +++LIS F AI++   M  ++           + ++      
Sbjct: 464 FLSGLTGVLFREFAFTLAVAVLISGFVAITLSPIMSAWVCPDSGHESASTRFVNNRFDKT 523

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L    +       +           +C    +F+      I+ + G  + V A     
Sbjct: 524 AELYSRVVDWALRYRKQLITAGVFFSLLCLPLYMFSLKELAPIEDQDGFTIVVDAAPESA 583

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLV--------RLQYQPGDSVAQTRVLEMVKKKI 642
           +       ES+      +         ++                  +   ++  +   +
Sbjct: 584 IDNSLLGFESVVDMMSDYPEATSTWQIILPSGGFGGQDFVPFEDRDRSIQELIPEIYSDM 643

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             +  ++     +   P   +  +   I  
Sbjct: 644 KSLPRVNAFPAADSSLPTAGQFDVEIAITS 673



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 85/217 (39%), Gaps = 11/217 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-GIVG 672
             + ++ +   P    ++  V + + + + +I           +G  ++  +      + 
Sbjct: 289 THDKVIWVGIYPVPGSSEIEVADGIYEAVEDINKTLPDDLEIFIGYDVTDYMRNALSEIA 348

Query: 673 VIISAIAMLI---YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           + +    +L+    + +   +  AL  + T+ + +        L G   NL  + A++  
Sbjct: 349 ITLGETIILVGLVVVALMGSFRTALVPLLTIPISLLGATAAMMLLGFSLNLLTILAIVLS 408

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G  V+D +VV + + +N++     +S ++    S    L   +  ++   +   P+   
Sbjct: 409 VGLVVDDAIVVVENVARNLRE---GMSRKEAAMASSRRLLSPIIAMTLTLAVVYAPIGFL 465

Query: 790 GG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            G    +   FA  +A  ++++   +I   +PI+   
Sbjct: 466 SGLTGVLFREFAFTLAVAVLISGFVAI-TLSPIMSAW 501



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/269 (9%), Positives = 83/269 (30%), Gaps = 11/269 (4%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              +  +         +    + + + +   V L  + +   +     +            
Sbjct: 753  YRVIPMLAENQRSSPETLLDMPIRIPSGDLVPLGTLVTLERATGPRALIRFQQKNAFKVY 812

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +        A   + +  ++ +     +     +  +  + +  L    I  V++  +
Sbjct: 813  GGVIPGITKEQALAHLEKKAEELLPPGYMVDYTGESREIRSEGNTMLSVLMISTVLVFFV 872

Query: 679  AMLIYIWIRFKWYFALGAI-TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
              + +   R      LG++   L   +  T    +      N+ +   ++TL+G    + 
Sbjct: 873  LAIQFNNFRDPLIILLGSVPLALFAALVITFVGLS----TINIYSQVGLITLVGLVAKNA 928

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ +      +   + ++  D I  +    L   + T+ A  +   P+ +    G    
Sbjct: 929  ILIVEFAN---QAQISGLNKFDAIRAAAEARLRPVLMTTGATVLGHFPLVLVTGAGAEAR 985

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             S    +  G+++    ++ +   I    
Sbjct: 986  NSIGFILVVGMLIGTLFTLVMLPAIYATF 1014


>gi|149924427|ref|ZP_01912791.1| cobalt-zinc-cadmium resistance protein (CzcA)-like protein
           [Plesiocystis pacifica SIR-1]
 gi|149814695|gb|EDM74270.1| cobalt-zinc-cadmium resistance protein (CzcA)-like protein
           [Plesiocystis pacifica SIR-1]
          Length = 1055

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/677 (11%), Positives = 182/677 (26%), Gaps = 57/677 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N+ ++ +L+ ++   G++ AL     +   ++FP       +           +V     
Sbjct: 14  NSVFVNLLFFLVVVAGIVGAL-----KLPREQFPEVSLDAVM---------VQVVYVGAT 59

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   L    +E    +           +    +T++F       +   +V   +  V
Sbjct: 60  ASDVEELLLRPIEEELDNVSDVKRIESIANEGAGSVTVTFNAGTDLRDARSEVEKAVNAV 119

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D +   +         + ++      +   A         +  +Q+        
Sbjct: 120 Q-DLPEDAETPQVNEVKLDLPVLTVAMLGDRSMRLEA--------ERLQEQLARVWGVAG 170

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    D ++LR L    A++S        S                    
Sbjct: 171 VDVVGLTEPRIVVALDETKLRSLQIQPAQVSQAIRNAKASVPAGTVERNGQEVFVKTDKR 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E   +++ I L                                   I +          
Sbjct: 231 LESAADVAAIPL----------------------RPGSPIRLGDVAEIRELEEQPDSRYY 268

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +      Q +   +              L   L A        +V E             
Sbjct: 269 VNGVEAVQLVVKRERSADPLEIRADVMELLPALEASMPAGSRLVVSEDYTIVIRDRLQTV 328

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A  A LV++VL ++  + +  L+A + + ++ ++   L+     T+ + S  G+++
Sbjct: 329 AINGASGALLVVLVLAVVAGFRQ-ALLALWGMPVSYLMATFLMDKGDITINVISTFGLLI 387

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
             G+ VD  I+V E  +      ++   +   G       +  +  T  +A + L   GG
Sbjct: 388 ATGIVVDDAIVVIENTQRHLEMGKTRVQAAIAGAKEVLLPVTVAVTTTCLAFLPLTMVGG 447

Query: 483 GAVRGF---AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              R      +T+   ++ S+  AI I+   +                + R       I 
Sbjct: 448 TMGRVMRILPLTVVFCLIGSLIEAIFILPGHLAHYASKDAEGGRTARLVERMKATYRPIL 507

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV--------LANRPVDL 591
              +R R   V ++ +  +  I L       Y    K      V              + 
Sbjct: 508 ELCLRWRKTAVFLTFVGFLGVIALATNMRFQYTAPAKPTELSVVFKLPAGVNRTQTKAEG 567

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +R  +          +      + +     +   +        +   +    +    +
Sbjct: 568 DTIRRLILDALDSPEESEQNLVRASKMRIGSVRDPRTQMLDTGANVGIVRFEFALDEEVV 627

Query: 652 QNTEIVGPKISRELIRK 668
                V  ++   L   
Sbjct: 628 DRWPEVEAQLEDYLATN 644



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 136/527 (25%), Gaps = 44/527 (8%)

Query: 5    PWL--VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
             W    +  + +  +G++    N   Q      P       +S+   L  G +      E
Sbjct: 512  RWRKTAVFLTFVGFLGVIALATNMRFQYTAPAKP-----TELSVVFKLPAGVNRTQTKAE 566

Query: 63   DDFVN----GFLQMYSDELRSFLKKEGIGVFSMR----------QIQNKITLSFADSRFK 108
             D +       L    +  ++ ++   + + S+R               +   FA     
Sbjct: 567  GDTIRRLILDALDSPEESEQNLVRASKMRIGSVRDPRTQMLDTGANVGIVRFEFALDEEV 626

Query: 109  ENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168
             +   +V   L+   +         +++          ++     +  +        ++R
Sbjct: 627  VDRWPEVEAQLEDYLATNPDLSGYTIILPMAGPPAGPAVTARVRGRDAAEI----DTVVR 682

Query: 169  QRIDQIGISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
                 +   +        S           D         +  +++       +      
Sbjct: 683  DLKAYLRTMKGVSDVDDDSGTGKETFAVRVDQDMAALYGLSELEIANAVRAAIDGLIATE 742

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
              +   R     +      ++ +G                 +  ++      +       
Sbjct: 743  VSIDEQRVEIVVRTEGAQGLDRAG-----------------IGSLTITSSAGQIVRLDQV 785

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
              + +   +    R      I           S       A        A + P      
Sbjct: 786  ARLERTREIGSIRRRDGQRAIGVTAEVDSEVTSALEVTSVAQKWWDERVAPTYPNLELQF 845

Query: 348  EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                      S    KG   +  GL+ IVL +        ++   ++   V+  +  L  
Sbjct: 846  GGD-AEEINESLEDLKGAFLLAIGLIYIVLALQFKSYLQPIIILCAVPFGVMGAVLGLFG 904

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            +G  L+L ++ G+V   G+ V+ ++++ + I     +   +  +   G       I  + 
Sbjct: 905  MGYDLSLFALFGVVALAGIVVNDSLVMVDFINTRRAEGARILDAALDGALERLRPIISTT 964

Query: 468  ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            +T       L    GG  +  A            +   ++  +    
Sbjct: 965  LTTCFGLGPLAIGLGGKDQILAPMAISIAAGLGISTGLVLLIVPSVY 1011



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +  AL A+  + +             I  N+ +   +L   G  V+D +VV     +N +
Sbjct: 349 FRQALLALWGMPVSYLMATFLMDKGDITINVISTFGLLIATGIVVDDAIVVI----ENTQ 404

Query: 750 LY-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
            +     +          E L           ++ LP+ + GG+   V+    + + F +
Sbjct: 405 RHLEMGKTRVQAAIAGAKEVLLPVTVAVTTTCLAFLPLTMVGGTMGRVMRILPLTVVFCL 464

Query: 806 VVAASSSIFIAA 817
           + +   +IFI  
Sbjct: 465 IGSLIEAIFILP 476


>gi|330863186|emb|CBX73313.1| multidrug resistance protein mdtB [Yersinia enterocolitica W22703]
          Length = 959

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/458 (12%), Positives = 133/458 (29%), Gaps = 24/458 (5%)

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                    + ITL F  +   +    +V   +    + L  D     + +        +
Sbjct: 1   MASQSSGGASVITLQFQLTLPLDVAEQEVQAAINSATNLLPNDLPYPPIYSKVNPADPPI 60

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L+   +        +    +  +   +I           S      +  + +   +  L 
Sbjct: 61  LT-LAVTSSAIPMTQVEDMVETRIAQKISQVTGVGLVTISGGQRPAVRVKLNAPAVAALG 119

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
             +  +       N +                                   +AN   K+ 
Sbjct: 120 LDSETIRTAISNANVNSAKGSLDGPTRS--------------------VTLSANDQMKSA 159

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           +   D+                 I +                       +  ++   T +
Sbjct: 160 EDYRDLIVAYQNGAPVRLQDVATIEQGAENNKLAAWANNQQAIVLNIQRQPGVNVIATAD 219

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
           +   +   L           V          S +  +    +   LV++V+++ +     
Sbjct: 220 SIREMLPELIKSLPKSVDVKVLTDRTTTIRASVNDVQFELLLAIVLVVMVIYLFLRNAAA 279

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            ++   ++ L++I T A +  LG ++   ++  + +  G  VD  I+V E I     K +
Sbjct: 280 TIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGE 339

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
               +   G      TI     + +   + L F G   G   R FA+T+ ++ILIS   +
Sbjct: 340 KPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVS 399

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           +++   M   ++ Y+ ++  +    +        IA  
Sbjct: 400 LTLTPMMCARMLSYESLRKQNRLSRASEKFFDWVIAHY 437



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 13/270 (4%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
             S+  S            +  + ++ G  + +     ++     + L +      +   
Sbjct: 145 TRSVTLSANDQMKSAEDYRDLIVAYQNGAPVRLQDVATIEQGAENNKLAAWANNQQAIVL 204

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +  +            +++ + K +   V              +  EL+    
Sbjct: 205 NIQRQPGVNVIATADSIREMLPELIKSLPKSVDVKVLTDRTTTIRASVNDVQFELL---- 260

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + I  + M+IY+++R      +     + L +  T       G   N   + A+    
Sbjct: 261 --LAIVLVVMVIYLFLR-NAAATIIPSIAVPLSLIGTFAAMYFLGFSINNLTLMALTIAT 317

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +         D   K   E     +  + +    ++P+   G
Sbjct: 318 GFVVDDAIVVIENI---SRYIEKGEKPLDAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 374

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
              G +   FA+ +A  I+++A  S+ +  
Sbjct: 375 DIVGRLFREFAVTLAVAILISAVVSLTLTP 404



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 75/200 (37%), Gaps = 6/200 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
             +E V +    I   + I           +  +   +  +I + +AM I + + ++ + 
Sbjct: 742 EAVEAVTQAEQAIQLPADITTRFQGSTLAFQAALGSTLWLIIAAIVAMYIVLGVLYESFI 801

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  ++TL       L    L G E ++ A+  ++ LIG    + +++ D         
Sbjct: 802 HPVTILSTLPTAGVGALLALMLTGHELDVIAIIGIILLIGIVKKNAIMMID--FALAAER 859

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
              ++  D I ++        + T++AA    LP+ +    G  +     + M  G++V+
Sbjct: 860 DQGMTPYDAIYQACLLRFRPILMTTLAALFGALPLMLSTGAGAELRQPLGVCMVGGLIVS 919

Query: 809 ASSSIFIAAPILLFIYDWRA 828
              ++F    I L       
Sbjct: 920 QVLTLFTTPVIYLLFDKLAR 939


>gi|172058899|ref|YP_001815359.1| acriflavin resistance protein [Exiguobacterium sibiricum 255-15]
 gi|171991420|gb|ACB62342.1| acriflavin resistance protein [Exiguobacterium sibiricum 255-15]
          Length = 1055

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/681 (11%), Positives = 181/681 (26%), Gaps = 50/681 (7%)

Query: 3   NNPWL-VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           NN +   +L  +I   G+            L+  P                    +    
Sbjct: 10  NNKFALWLLTIIITVAGIYAG-----TTMKLETLPDITTPTV---------SVTTIYPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +     L        S  Q  + + + ++ S   +    KV   L  
Sbjct: 56  TPEQVLDEVSRELESKVENLGGVETVRSSSFQNASNLQIDYSFSTDMDEAEQKVKEALAN 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    ++  +   +     I+     +        + +  +  +   ++   E   
Sbjct: 116 V--ELPEGAQEPQVSRISFDAFPII--GFAVSDENRSLSDLTKLVENELQPKLEGIEGAQ 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF-----GVRFLRDS 236
               + + + ++    D  +L+Q   T   +       ++     ++         + D 
Sbjct: 172 TVQIAGQEIRRIEIRFDEKKLQQYGLTEENVKQLIQANDSRLALGLYELGDKEQAVVLDG 231

Query: 237 DGNQYLVEDKVEI-------------------SGIHLNGATANFDPKTHKPVVDISFDEM 277
                     + +                   SG             +            
Sbjct: 232 KATTVNALKNIRLPYTPQATPGAGQGQTQTPASGSDATQGQTQAPASSAPAGQTPVAAAP 291

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
                 ++++    +   +                 +     +    +            
Sbjct: 292 TQVPTVKLSQLAKIEDKGIEESISRSNGERSIGVQVTKSQDANTVEVVNAVKE-TIKDFE 350

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
                    V          S S       I A   ++++ + +   K  ++A  SI L+
Sbjct: 351 KDNDGVKASVTLDQGKPIEESVSTMISKALIGALFAVVIILLFLRNFKSTIIAVISIPLS 410

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ---SVFCSLDM 454
           +++ + +L  L  +L + ++  + + IG  VD +I+V E I                +  
Sbjct: 411 LLMAILVLKQLDISLNIMTLGAMTVAIGRVVDDSIVVIENIYRRLTDPTEPLKGKALIIE 470

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMM 511
                +  +  S I  +   + L F     G     FA+T+  ++  S+  A+++V    
Sbjct: 471 ATREVFIPVASSTIVTIAVFLPLGFVTGFVGELFLPFALTVVFALFASLIVAVTVVPMFA 530

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
             + +  K    +     +       +    +  +F   G+++L  I S  L+ T G+N+
Sbjct: 531 DSLFKRGKAPKPEKEDGGKLANWYRGVLNWSLNHKFVVFGLAVLLLIGSFALVPTIGVNF 590

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
                          +P            L  G    Q       F V  +        +
Sbjct: 591 LNQESEKTFYVTYNPKPGQTLDDSLKAADLAEGYFEKQRDMDNLQFTVGGENPLNPGNTK 650

Query: 632 TRVLEMVKKKITEIVPLSTIQ 652
             V        T        Q
Sbjct: 651 QAVFIAQYDPDTADFADVKQQ 671



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 89/240 (37%), Gaps = 7/240 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + +E   I +   ++       +   + Q  ++V     ++   K   +         T 
Sbjct: 303 AKIEDKGIEESISRSNGERSIGVQVTKSQDANTVEVVNAVKETIKDFEKDNDGVKASVTL 362

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
             G  I   +       +I +  A++I +     +   + A+ ++ L +   +       
Sbjct: 363 DQGKPIEESVSTMISKALIGALFAVVIILLFLRNFKSTIIAVISIPLSLLMAILVLKQLD 422

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I  N+  + A+   IG  V+D +VV + + + +   T  +  + LI ++  E       +
Sbjct: 423 ISLNIMTLGAMTVAIGRVVDDSIVVIENIYRRLTDPTEPLKGKALIIEATREVFIPVASS 482

Query: 776 SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++      LP+     + G +   FA+     +V A  +S+ +A  ++    D   K  +
Sbjct: 483 TIVTIAVFLPLGFVTGFVGELFLPFALT----VVFALFASLIVAVTVVPMFADSLFKRGK 538



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 88/234 (37%), Gaps = 12/234 (5%)

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
               +  +       LV        +   T   + + K + +I   + +        +  +
Sbjct: 825  KGTTPDSLSERDGKLVATVTAELKTDKATEASQAIDKTVKKINLPTGVSYKAGGVTEQIQ 884

Query: 664  ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFFALF--GIEFNL 720
            E   +  + +  +   + + + + F    AL  +  L  L      G  AL   G   ++
Sbjct: 885  ESFTQLGLAMAAAVAIVYLVLVVTFG--GALTPLVILFSLPFAIIGGLLALLITGETISV 942

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            +++   L LIG  V + +V+ DR+   +      +  R+ +  +    L   + T++A  
Sbjct: 943  SSLIGALMLIGIVVTNAIVLIDRV---IHKEKEGLDTREALLDAAGTRLRPILMTALATI 999

Query: 781  ISV--LPMAVWGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             ++  L + + GG++I     + +  G+  +   ++ I  PI+   +    KN 
Sbjct: 1000 GALSPLALGLEGGALISKGLGVTVIGGLTSSTLLTLLIV-PIVYEFFARFRKNK 1052


>gi|284038587|ref|YP_003388517.1| acriflavin resistance protein [Spirosoma linguale DSM 74]
 gi|283817880|gb|ADB39718.1| acriflavin resistance protein [Spirosoma linguale DSM 74]
          Length = 1055

 Score =  133 bits (333), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/517 (12%), Positives = 149/517 (28%), Gaps = 40/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++++++   G +            D  P       I++     GGS       
Sbjct: 9   KRPLLITVIFTVLILFGAIS-----YTGLNYDLLPKFD-AGVITVNTRYVGGS------- 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +    ++  S ++   I   +  +  + I +         +    V   +  
Sbjct: 56  -PDNIQSLITKPIEDAISTVEGIDIVTSTSMENVSIIKIQLKSGVSDLSAQQDVERRIAQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  D    ++   +  +  I+    +         +    I +  + ++       
Sbjct: 115 IKSTLPADADDPVVNRFSTDQFPILNLSVSAKLSSQQLYQL---IDQSILPELSNVSGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D ++L     +  ++       N S           R S     
Sbjct: 172 QISLIGGEPREIEVNLDNAKLAAYSLSAKQIYQLISSSNVSYPAGDVVSNENRTSIQLNT 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +     +  + L                       G  R        I    A      
Sbjct: 232 DISQIQALHDLVLKQIP-------------------GGSRVLLSDVATITDSQARTSTLN 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL-NIVEERNVGADLGSDS 360
            +          S     +     E        ++           +        L S  
Sbjct: 273 RINGREGIGIQISKTNDANSVAVSEAVKEKLVEIKKEYATQGFDYQIASDQSIYTLSSAD 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   +V  V+ + +   +       +I   +I T  ++S+LG +L L ++ G+
Sbjct: 333 AVVEDLLMAILIVGGVMLLFLHSLRSSFFVLVAIPSAMIPTFIVMSVLGFSLNLMTLLGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD +I+V E I       +S   +   G +    T     +  L+  + +   
Sbjct: 393 SLVVGILVDDSIVVLENIFRHLEMGKSKVQAALDGRTEIGFTAVAITMVDLVVFMPMALT 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G   G  +R FA+ +  S L+S+  + ++   +    
Sbjct: 453 GGLIGNILREFALVVVFSTLMSLLVSFTLTPLLASRF 489



 Score = 71.3 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 84/237 (35%), Gaps = 10/237 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V          S        +    + +              + +++E+ K+  T+  
Sbjct: 256 SDVATITDSQARTSTLNRINGREGIGIQISKTNDANSVAVSEAVKEKLVEIKKEYATQGF 315

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                 +  I     +  ++   ++ ++I    ML+++        +   +  +   +  
Sbjct: 316 DYQIASDQSIYTLSSADAVVEDLLMAILIVGGVMLLFL---HSLRSSFFVLVAIPSAMIP 372

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           T    ++ G   NL  +  +  ++G  V+D +VV + +    +      S          
Sbjct: 373 TFIVMSVLGFSLNLMTLLGLSLVVGILVDDSIVVLENI---FRHLEMGKSKVQAALDGRT 429

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           E    +V  +M   +  +PMA+ G   G+++  FA+ + F  +++   S F   P+L
Sbjct: 430 EIGFTAVAITMVDLVVFMPMALTGGLIGNILREFALVVVFSTLMSLLVS-FTLTPLL 485



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 88/251 (35%), Gaps = 7/251 (2%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            +  +  ++R    +     +     +                     +++ ++ K+ +  
Sbjct: 780  QNNNRQIIRLYQVASVDEVLVQSVLERTNRLNSITITSSAVGRPSGTIVKDIQTKLAQQH 839

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDIT 705
                +  + +   K   E        ++I+   +  + + +     +    + ++ + + 
Sbjct: 840  LPVGVSVSYLGDAKNQNEAFSSLGFALLIAIALVYFVMVGLYESVIYPFVVLFSIPVALI 899

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L   AL   +  +  +  ++ L+G    + +++ D +     L +     R+ + ++ 
Sbjct: 900  GALLAIALTMNQLTIFTLIGMIMLLGLVAKNGILIVDFVN---HLRSEGHPIREALVEAG 956

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             E L   + T+ A  + +LP+A     G       A  +  G+  +   ++F+   + L 
Sbjct: 957  KERLRPIMMTTFAMILGMLPLAYSTSPGSEFKNGMAWVLIGGLTSSFLFTLFLVPNVYLV 1016

Query: 823  IYDWRAKNARI 833
            +   + K  R+
Sbjct: 1017 VDWLQEKAGRL 1027


>gi|302339485|ref|YP_003804691.1| acriflavin resistance protein [Spirochaeta smaragdinae DSM 11293]
 gi|301636670|gb|ADK82097.1| acriflavin resistance protein [Spirochaeta smaragdinae DSM 11293]
          Length = 1038

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 86/678 (12%), Positives = 190/678 (28%), Gaps = 38/678 (5%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
              +  ++    L++          +  FP+                   V      D +
Sbjct: 9   KRPVTILMVIFALILFGVMAYMSMPISLFPNVTIPYIT---------IQTVYAGASPDVI 59

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    ++  + + +            + +   F  S+ +     ++   ++ + S L
Sbjct: 60  ETQITKKIEDQVASVSQLKTLTSYSMDSVSAVIAEFEISKDENIALQEIKDKVEVILSDL 119

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             D ++  +          V++      +   A            D+            S
Sbjct: 120 PDDAERPKISKVDIASAMPVMNIVLEGDMEPSA--LYTFGSTTVSDRFAQVAGVSSVDLS 177

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                ++  E D S +   +   ++++      +    G  F +         +   +D 
Sbjct: 178 GGQKREIRVEFDRSTVFSHMVPLSQVAGILGAASVDIPGGNFQLEDQDIPARLEGEFDDL 237

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +I  + +   T  F  +    V              + + +++     ++         
Sbjct: 238 DQIRNLDIPTGTGTFKLRQLADV--------------KDSSEDVRVRTVLLDQKAGTRED 283

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                        +    ++        + A    I+L IV+E        S +      
Sbjct: 284 NAILLGVVKNPSANTVDVVDGVTEQIKEIEASYPGIRLKIVKEDAS-YVRESVAGTLTNV 342

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            +      +VL   +   +  L+   ++  ++I T  ++   G +L + S+ GI   IG 
Sbjct: 343 YLGIIFTGLVLLFFLHDLRSTLIVVLAMPFSIIATFLVMKAAGISLNMLSLMGISCSIGT 402

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
            V ++++V E I            S  +G       +F S +T +   V +    G   +
Sbjct: 403 LVSNSVVVLENIFRHKELGHDRINSASLGAKEVTVAVFASTMTNVAVFVPMGSMSGMMGK 462

Query: 487 ---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
               FA T+ ++ L S F + ++   M   I+  K  K + I+            A   +
Sbjct: 463 ILANFAYTIVIATLFSFFVSFTLTPMMASRILPEKAKKELPISKALEAMFRRWEKAYGRI 522

Query: 544 ---------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                    R+      I  LF             N      G IQ+ V   +   L   
Sbjct: 523 LGGMLKNKGRSALVVFLIIALFGFSMHLGGNLKFENIPQSDGGKIQVDVDLPQGQRLEST 582

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            S LE ++         +     L        D       + +V K        +     
Sbjct: 583 ASILEEIEGRLSRHPEIESILTTLGTQGIMDEDVSLAQMTVYLVPKSERSQDSSAMASMV 642

Query: 655 EIVGPKISRELIRKGIVG 672
                 I    IR   + 
Sbjct: 643 ARELTDIPGVTIRVMPIS 660



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 85/251 (33%), Gaps = 4/251 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +  D+     ++    +          +   L+ +   P  +          + K
Sbjct: 251 TFKLRQLADVKDSSEDVRVRTVLLDQKAGTREDNAILLGVVKNPSANTVDVVDGVTEQIK 310

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTL 700
             E                  RE +   +  V +  I   L+ ++        L  +  +
Sbjct: 311 EIEASYPGIRLKIVKEDASYVRESVAGTLTNVYLGIIFTGLVLLFFLHDLRSTLIVVLAM 370

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
              I  T       GI  N+ ++  +   IG  V++ VVV + + ++ +L    I+   L
Sbjct: 371 PFSIIATFLVMKAAGISLNMLSLMGISCSIGTLVSNSVVVLENIFRHKELGHDRINSASL 430

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             K +   +  S  T++A F+ +  M+   G ++ +FA  +    + +   S F   P++
Sbjct: 431 GAKEVTVAVFASTMTNVAVFVPMGSMSGMMGKILANFAYTIVIATLFSFFVS-FTLTPMM 489

Query: 821 L--FIYDWRAK 829
               + +   K
Sbjct: 490 ASRILPEKAKK 500



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 10/156 (6%)

Query: 671  VGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            + V+     +L Y+    I   +   L  ++T+ L +   +      G   N+ A+  ++
Sbjct: 862  LIVVFFIAVILTYMLLAAILESFVQPLFILSTVPLSMIGIVLICLATGTVLNVVAMLGII 921

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G  VN+ +++ D      +L     S  D + ++    L   + ++++  + +LPMA
Sbjct: 922  MLVGIVVNNGILILD---YYNQLKAKGKSTHDALVEASVVKLKPVLMSNISIVLGMLPMA 978

Query: 788  V----WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     G  +     I +  GIV A   ++F+   +
Sbjct: 979  LGIGGAGAEMRQPMGIVIVGGIVSAMFLTLFLLPSL 1014


>gi|152991871|ref|YP_001357592.1| RND efflux transporter [Sulfurovum sp. NBC37-1]
 gi|151423732|dbj|BAF71235.1| efflux transporter, RND superfamily [Sulfurovum sp. NBC37-1]
          Length = 1016

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/674 (10%), Positives = 179/674 (26%), Gaps = 48/674 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++    +   G L              +P+                   +    E
Sbjct: 8   RPIATLMYVVTLVIFGWLS-----FKSMPAALYPNVDFPMVT---------IKTIYPGAE 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E  S +        +  +  + + + F   R      + V   +  V
Sbjct: 54  ASTVESQVTDKIEEAISRIGGVDAITSTSSEGASVVMVKFFLERDINEATNDVRDKVSAV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D K  L+         ++     +           +    +    +        
Sbjct: 114 --VLPKDAKTPLVSKLDIGGAPVI--NVFLTAKKDTIKNLMLFADEKVKPSLQKINGVGA 169

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    D   L +   T  +++      N    G     +        +  
Sbjct: 170 INIIGYRDREIKILPDIRMLNKFGITVRELNSIVEHENVKIGGGKLITKTKEFILKTKAD 229

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                E+  I +                                   +   L+       
Sbjct: 230 ALSVEELRNIIIKND------------------------IRLKDVAKVEDTLSDPDSYAS 265

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +    +E        L+  +       + +      + S    
Sbjct: 266 YNGIPGVMLEVQKISGTNTLEIVERVKEAVPGLQKMAEDKYGVEILQDTTPFIIHSLEDV 325

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +      A L +I++F  +      +V+  SI ++++ T+AL++ +G  L   ++ G+ L
Sbjct: 326 EFDLVYGAFLAVIIIFGFLRNFTITVVSALSIPVSIMGTIALMNFMGFNLNKMTLIGLTL 385

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV---LFF 479
            IG+ +D  I+V E I ++       F +   G       I   +   L   +    +  
Sbjct: 386 SIGIIIDDAIVVLENIYKKMEAGMGKFEAAVEGVKEMAFAILAISAMLLAVFIPVANMSG 445

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FA+T+G +++IS   A++ + ++   ++   +    +I       +     A
Sbjct: 446 IVGKFFESFAMTVGFAVIISYTVAMTFMPSLSARVLHKGESWFYNITEPFFKAMEKIYDA 505

Query: 540 IQFMRARF---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                 RF     + I  +F                 + K   ++ + A   + L  +  
Sbjct: 506 TLRFVLRFKVSTLIVIIAIFVGSLSLFPKIGMDFIPKEDKAEFEIKLRAQPGISLEEMIK 565

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             ++++      +N       +     +  +       L    K+      +      ++
Sbjct: 566 ESKAIESLVRKDKNVLFTTLSVGYNSVKEKNKALIYVKLTPKSKRSIGQEQIIQNFREQL 625

Query: 657 VGPKISRELIRKGI 670
              +    +    I
Sbjct: 626 KPYQKKMYITAAAI 639



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 62/156 (39%), Gaps = 7/156 (4%)

Query: 672 GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            + +S I M I + I ++     +  +  L L I   +    L G  F+L  +   + L+
Sbjct: 844 ALGLSVILMFIILAILYESLIQPVIIMVALPLSIIGVMIALFLSGQHFSLFVMIGFMLLM 903

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
           G    + V++ D   +              + ++  + L   + T++A   ++LP+A+  
Sbjct: 904 GMVGKNAVLLVDFANE---AVARGKDANAALLEAGEKRLRPILMTTIAMIFAMLPLALSH 960

Query: 789 -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             G       AI +  G++ +   ++ +   I   I
Sbjct: 961 SLGSETKAPMAIAVIGGLLSSMVLTLLVVPVIYRMI 996



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 66/209 (31%), Gaps = 6/209 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V+            RV E V            ++  +   P I   L       V  + +
Sbjct: 276 VQKISGTNTLEIVERVKEAVPGLQKMAEDKYGVEILQDTTPFIIHSLEDVEFDLVYGAFL 335

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           A++I       +   + +  ++ + I  T+      G   N   +  +   IG  ++D +
Sbjct: 336 AVIIIFGFLRNFTITVVSALSIPVSIMGTIALMNFMGFNLNKMTLIGLTLSIGIIIDDAI 395

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF- 797
           VV + +    K     +   +   + + E     +  S       +P+A   G V   F 
Sbjct: 396 VVLENI---YKKMEAGMGKFEAAVEGVKEMAFAILAISAMLLAVFIPVANMSGIVGKFFE 452

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +  M  G   A   S  +A   +  +   
Sbjct: 453 SFAMTVG--FAVIISYTVAMTFMPSLSAR 479


>gi|330821849|ref|YP_004350711.1| Multidrug resistance protein MdtC [Burkholderia gladioli BSR3]
 gi|327373844|gb|AEA65199.1| Multidrug resistance protein MdtC [Burkholderia gladioli BSR3]
          Length = 1100

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/552 (11%), Positives = 149/552 (26%), Gaps = 38/552 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   GL   +   +       FP+                    L   
Sbjct: 9   RRPVATTLLALGIALSGLFAFVKLPVSPLPRVDFPTIS--------------VFANLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V+  +    +     +        +       I+L F   R     A  V   +  
Sbjct: 55  SPATVSTSVTSPLERHLGSIAGVTQMTSTSSLGNALISLQFVLERDLNGAARDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    K N          + ++   ++   I+                +   E   
Sbjct: 115 ARADLPASLKSNPTFQKVNLADTPIMV-LSVTSDIAPPSRVYDAASTVLQQALSQIEGIG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +  E +P  L         +       N +    M  V           
Sbjct: 174 EVDVFGAASPAVRVELEPHALFHYGIGLEDVRAALASANANSPKGMIEV----------- 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G +      N          D+                ++   +  + +  
Sbjct: 223 ---------GPNRYQLYTNDQASQASQYRDLVVAYRNNAAVRLTDVGSVIDSVEDLRNLG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I       +    ++        L A   P                S + 
Sbjct: 274 LANGKRAVLVILYRSPGANIIDAVDRVKAALPRLSAALPPDVDLGSVLDRSVTIRSSLAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +   +  L+   ++ +++I T   + +LG ++   S+  ++
Sbjct: 334 TEHTLVVAVALVVMVVFVFLRNWRATLIPTAAVPVSIIGTFGAMYVLGFSIDNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  ++V E I       +    +   G      T+   +++ +   + +    
Sbjct: 394 VATGFVVDDAVVVLENIMRHIENGKPRMQAALDGAREVGFTVVSISLSLIAVFLPILLMT 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ L+I +S+  ++++   M   ++        +           + +
Sbjct: 454 GLIGRLFREFAMTLSLAIAVSLVVSLTLTPMMCARLLPEAGSHRKEGRLSRWLERGFERL 513

Query: 539 AIQFMRARFWGV 550
              + R   W +
Sbjct: 514 QSGYDRTLQWAL 525



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/131 (19%), Positives = 49/131 (37%), Gaps = 6/131 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L     + + I  T G   + G   +  ++ A++   G+ V+D VVV + +   M+
Sbjct: 356 WRATLIPTAAVPVSIIGTFGAMYVLGFSIDNLSLMALIVATGFVVDDAVVVLENI---MR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                            E     V  S++     LP+ +  G +      FA+ ++  I 
Sbjct: 413 HIENGKPRMQAALDGAREVGFTVVSISLSLIAVFLPILLMTGLIGRLFREFAMTLSLAIA 472

Query: 807 VAASSSIFIAA 817
           V+   S+ +  
Sbjct: 473 VSLVVSLTLTP 483



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 31/143 (21%)

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG-------YSVNDKVVVYDRM 744
              +GA+  L++            G EF++  +  +  LIG         ++  VV     
Sbjct: 957  AGVGALLALLIS-----------GTEFDIIGLIGIFLLIGIVKKNAILMIDYAVV----- 1000

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
                       S  + I ++        + T+MAA    LP+      G  +     I +
Sbjct: 1001 -----AAREGKSSFEAIHEACRLRFRPILMTTMAALFGTLPLVFGHGDGAELRAPLGITL 1055

Query: 802  AFGIVVAASSSIFIAAPILLFIY 824
            A G++V+   +++    + L++ 
Sbjct: 1056 AGGLIVSQVLTLYTTPVVYLYMD 1078


>gi|290961079|ref|YP_003492261.1| integral membrane efflux protein [Streptomyces scabiei 87.22]
 gi|260650605|emb|CBG73721.1| putative integral membrane efflux protein [Streptomyces scabiei
           87.22]
          Length = 1042

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/516 (13%), Positives = 156/516 (30%), Gaps = 36/516 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  ++  I L+      +PQ      P+        L            +  
Sbjct: 6   RFSLAQRALVGLMSIIALVFGA-IAIPQLKQQLLPTIELPVVSVLAP---------YQGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    ++    +        +  +    I  SF      E +   V   +  
Sbjct: 56  SPDVVEKQVVEPIEDSLEAVGGITGVTSTASEGNALIMASFDYGPGTEQLVADVQQAVNR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  D    ++  +T+   ++VL+ ++ +         +  + R  +  +   +   
Sbjct: 116 VRAQLPDDVDPQVIAGSTDDIPTVVLAVSSGEDQQ----ALADRLDRTVVPTLKDIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q        +Q+    D ++L +   TT  +S                        G   
Sbjct: 172 QVTVDGVRDVQVTVTPDEAKLAKAGLTTMALSQALQA-------------------GGVT 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +     +  G +             +        E   +         + +  A      
Sbjct: 213 VPAGSFDEDGANRTVQVGGGYTSLEQIENLRVRGEGAKKPVRLADVAKVEEKQARADSLT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + +     S     E      A +R          V      A   S   
Sbjct: 273 RTNGEPSLAVMVTMDRNGSAVAISEAVEDKLADMRRDLGSGADVTVVSDQGPAVSKSIDG 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A+     ++V+ + +   +  LV   SI L+V+L L +L     +L + ++  + 
Sbjct: 333 LTTEGALGLLFAVLVILVFLASIRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALT 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD +I+V E I+      +    ++          +  S +T +   + +   G
Sbjct: 393 IAIGRVVDDSIVVLENIKRHLGYGEEREEAILKAVREVAGAVTSSTLTTVAVFLPIGLTG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G        F++T+  ++L S+  ++++V  +  + 
Sbjct: 453 GMVGELFGSFSLTVTAALLASLVVSLTVVPVLSFWF 488



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 97/252 (38%), Gaps = 14/252 (5%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
           A +PV L+ V    E     D   +         +V +            V + +     
Sbjct: 249 AKKPVRLADVAKVEEKQARADSLTRTNGEPSLAVMVTMDRNGSAVAISEAVEDKLADMRR 308

Query: 644 EIVPLSTIQNTEIVGPKIS---RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           ++   + +      GP +S     L  +G +G++ + + +L+++         L    ++
Sbjct: 309 DLGSGADVTVVSDQGPAVSKSIDGLTTEGALGLLFAVLVILVFLA---SIRSTLVTAVSI 365

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +   L       +  N+  + A+   IG  V+D +VV + ++   +         + 
Sbjct: 366 PLSVVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK---RHLGYGEEREEA 422

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
           I K++ E  G    +++      LP+ + G   G + GSF++ +   ++ +   S+ +  
Sbjct: 423 ILKAVREVAGAVTSSTLTTVAVFLPIGLTGGMVGELFGSFSLTVTAALLASLVVSLTVV- 481

Query: 818 PILLFIYDWRAK 829
           P+L F +    K
Sbjct: 482 PVLSFWFLRAPK 493



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 66/195 (33%), Gaps = 8/195 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                              V   +  K+  +        +     +   E      + ++
Sbjct: 795 DGRRAATITAKPKGDNTGAVSADLTAKLNALKLPEGATASIGGVSEDQDEAFASLGLAML 854

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +   F+     L  + ++    T  +G   + G    + A+  +L LIG  
Sbjct: 855 AAIAIVFMLLVATFRSLVQPLILLVSIPFAATGAIGLLIVTGTPLGVPAMIGMLMLIGIV 914

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
           V + +V+ D + +  +         + + +     L   + T++A   ++LPMA+     
Sbjct: 915 VTNAIVLIDLINQYRRQ---GYGTVEAVVEGGRHRLRPILMTALATIFALLPMALGVTGE 971

Query: 790 GGSVIGSFAIPMAFG 804
           GG +    A+ +  G
Sbjct: 972 GGFIAQPLAVVVIGG 986


>gi|114320043|ref|YP_741726.1| acriflavin resistance protein [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226437|gb|ABI56236.1| acriflavin resistance protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 1057

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/562 (11%), Positives = 152/562 (27%), Gaps = 41/562 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  ++  +GL       L       +P                   +     
Sbjct: 22  RRPVGTLAIAFLVLLLGLYSIGRLPLDLLPAVEYPQIR--------------VTVNYPGA 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    ++  + ++          + +  + L        +    +   +L+ 
Sbjct: 68  APEVMEQQVTRVLEQNLASVENLVSLESRASEGRTNVNLFLEYGSDLDLAIQEAARYLEL 127

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +++  D +   L      +  +  +            E    +  +   Q+       
Sbjct: 128 ARTQMPPDIEPPRLYRFDPAQDPVFQAGFTSS--TRTPPEVRDWLENRLAPQLNTVTGVG 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  ++ ++    D +RL       A +    V  N                     
Sbjct: 186 SVSVAGGVVREIQVLLDQTRLNSYGLGFADVERALVSENVDVPAGQITSAHFDVMTRTDG 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +I                      +       +R        +           
Sbjct: 246 RFRRVNDI-------------------AQVLLDVPGSDQRIPLSEVAQVVDGHQDQRIFA 286

Query: 302 VLTAPVINQAIPSGKAQISGNFTIE--TAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
            L      Q     +   +    +E   A + A                        GS 
Sbjct: 287 RLNGREATQLSVYKQPDANTVQVVEAVQARLEALQASGFITEDLQFATTRDPGHFIRGSV 346

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   +   L ++++   +   + GL    SI + V  T ALL + G TL + S+ G
Sbjct: 347 QAVATAALLGGVLAMVLVLFFLGSLRRGLAIGLSIPIAVAATFALLGVSGLTLNVMSLGG 406

Query: 420 IVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + LG+GL +D+ I+++E I     +  +S   +   G    +S +  + +T L A     
Sbjct: 407 LALGVGLLLDNAIVMSENIARHREQLGKSPEAAAHEGAREVFSAVLAATLTNLAAVTPFL 466

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
              G      R   +T+  +I+ S+  A+++V  +   + R +    +      R F   
Sbjct: 467 LVSGVAALLFRELILTISFAIVASLAAAVTLVPMLTTLLARLRWQSGLSDTLPIRGFGAG 526

Query: 536 DCIAIQFMRARFWGVGISILFS 557
                +  R    G        
Sbjct: 527 LEATTRGYRRLLRGAVRVPWLV 548



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 92/265 (34%), Gaps = 6/265 (2%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                G   + VL +       +R   + +     +    + +   L              
Sbjct: 788  TTSDGLGDVTVLPDNGRGPVYLRELADFVLGDSPAHIERENQTRILRVEADVDRLQTDLG 847

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                MV+  + +    +          +  +E  ++ +  V +S + +   + ++++   
Sbjct: 848  AAGRMVRDTLADFELPAGYSLLYGGADETVQETRQQLLQVVALSLLLVFTVLAVQYERLV 907

Query: 693  -ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + T  L +T  L    L G  F    +   + LIG  VN+ +++ + +   +   
Sbjct: 908  NPLVILATAPLALTGGLLALWLTGTPFTTPVMLGAVVLIGVVVNNAILLVEYI--EIGRR 965

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               ++  +   ++    L   + T++     + P+A+    G  ++   A+ +  G++ A
Sbjct: 966  DAGLNDAEAAVEAGAVRLRPILMTTLTTVAGMTPLAIGMGAGSDLMQPLALVVVGGLLSA 1025

Query: 809  ASSSIFIAAPILLFIYDWRAKNARI 833
               ++F+   + L          R+
Sbjct: 1026 MLLTLFVVPCLYLIANRCGRGIKRL 1050



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 91/252 (36%), Gaps = 14/252 (5%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +++ + LS V   ++  Q   I  +    E   L   +    ++V     ++   + +  
Sbjct: 263 SDQRIPLSEVAQVVDGHQDQRIFARLNGREATQLSVYKQPDANTVQVVEAVQARLEALQA 322

Query: 645 IV---PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                       T   G  I   +       ++   +AM++ ++        L    ++ 
Sbjct: 323 SGFITEDLQFATTRDPGHFIRGSVQAVATAALLGGVLAMVLVLFFLGSLRRGLAIGLSIP 382

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFR 758
           + +  T     + G+  N+ ++  +   +G  +++ +V+ +   R R+ +       S  
Sbjct: 383 IAVAATFALLGVSGLTLNVMSLGGLALGVGLLLDNAIVMSENIARHREQL-----GKSPE 437

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVI--GSFAIPMAFGIVVAASSSIFI 815
               +   E     +  ++    +V P + V G + +      + ++F IV + ++++ +
Sbjct: 438 AAAHEGAREVFSAVLAATLTNLAAVTPFLLVSGVAALLFRELILTISFAIVASLAAAVTL 497

Query: 816 AAPILLFIYDWR 827
              +   +   R
Sbjct: 498 VPMLTTLLARLR 509


>gi|304322014|ref|YP_003855657.1| cation efflux system protein [Parvularcula bermudensis HTCC2503]
 gi|303300916|gb|ADM10515.1| cation efflux system protein [Parvularcula bermudensis HTCC2503]
          Length = 1071

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 84/672 (12%), Positives = 194/672 (28%), Gaps = 42/672 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L  ++    L +     + ++ LD  P  +   ++ +  D  G             V   
Sbjct: 31  LIVLMLAAALAVTGWMAIQRTPLDAVPD-LTDTQVIIRTDFPG--------QSPQIVEDL 81

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          L K      S     + + + F D         +V   L  + S+L   
Sbjct: 82  VTYPLSTNLLGLPKTKDVRGSSMFGTSFVYVIFDDDVDLYWARSRVLEALSRLGSELPEG 141

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               +    T                 +   E           ++   E   +       
Sbjct: 142 AVPQIGPDATGVGWVYQY-ALVDKTGKTDLAELRSLQDWFLKLELAGVEGVSEVASVGGF 200

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + +     DP+RLR    +  ++       ++   G +           +   V++K+++
Sbjct: 201 VREYQVLLDPNRLRSYDLSITRIRDAVRAASSEVGGRVLEQGETEYVIRSSGYVDEKLDL 260

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                                 +   E G           +  P        +       
Sbjct: 261 E-------------------QVVVKAEDGTPVQLSHVARIVEGPALRRGIVELNGEGETV 301

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   +   +    IE        L+ G       +          GS    K      
Sbjct: 302 SGIVVMRDGENALSVIERVKEKLDSLQRGLPEGVEIVTVYDRAPLIEGSVDYLKDKLIEE 361

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
              V +V+ + +L+ +  LVA  ++ L V+    ++S  G T  + S+ GI + IG  VD
Sbjct: 362 GIAVALVILIFLLHVRSSLVAIITLPLGVLGAFLIMSWQGVTANIMSLGGIAIAIGAMVD 421

Query: 430 SNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           ++I++ E    +               +L          IF S +   ++ + +F   G 
Sbjct: 422 ASIVLVENASRKLADLGPKPDPSVRRQALVESAQEVGPGIFFSLLIITVSFLPVFALTGQ 481

Query: 484 AVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           + R     A T   ++  +   ++++V  +M++++R +  +       + F      +  
Sbjct: 482 SFRLFSPLAYTKTYAMAFAAILSVTLVPVLMLYLMRGRFRREEANPLNAFFVWAYKPLLH 541

Query: 541 QFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             +R ++  V +++  +   I  +           ++G +         V  + +R  L 
Sbjct: 542 LALRFKWITVALALALTASVIVPVQRIGSEFMPALYEGELLYMPTTLPGVSSTKMREIL- 600

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                +   +          +       +      +     K+            E +  
Sbjct: 601 --GQTNRVIKTVPEVDRVFGKAGRADTATDPAPLTMIETWIKLKPKEDWRPGVTVEDITD 658

Query: 660 KISRELIRKGIV 671
           ++  +L   G+V
Sbjct: 659 ELDAKLQMPGLV 670



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/208 (17%), Positives = 80/208 (38%), Gaps = 9/208 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 L+ +++ + E V + T+ +   +       L  K I   I  A+ +LI++    
Sbjct: 318 ERVKEKLDSLQRGLPEGVEIVTVYDRAPLIEGSVDYLKDKLIEEGIAVALVILIFLL--- 374

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               +L AI TL L +       +  G+  N+ ++  +   IG  V+  +V+ +   + +
Sbjct: 375 HVRSSLVAIITLPLGVLGAFLIMSWQGVTANIMSLGGIAIAIGAMVDASIVLVENASRKL 434

Query: 749 KLYTTSISF---RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMA 802
                       R  + +S  E      ++ +   +S LP+    G     F   A    
Sbjct: 435 ADLGPKPDPSVRRQALVESAQEVGPGIFFSLLIITVSFLPVFALTGQSFRLFSPLAYTKT 494

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830
           + +  AA  S+ +   ++L++   R + 
Sbjct: 495 YAMAFAAILSVTLVPVLMLYLMRGRFRR 522



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/270 (11%), Positives = 72/270 (26%), Gaps = 8/270 (2%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               I L +             I +   +   + LS +     +     I  +N       
Sbjct: 776  RYDIILRYDRPFRESATDLEEILVPAPSGAHIPLSELADISYAEGPPMIRSENARLTGWV 835

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             V +  +   S        +                      + +  L       + +  
Sbjct: 836  FVDIADRDMGSYVADARQVIANAVDLPAGYAVEFSGQYEQMQEANARLKIAIPAAIALIF 895

Query: 678  IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
               L+ +    +    L  + +L   +   +    L G   ++      + L G +V   
Sbjct: 896  ---LLLMLHFGRLDRTLIIMASLPFGLVGGMWAVWLAGYNLSVAVAVGFIALGGIAVETA 952

Query: 738  VVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
            VV+   +   ++             + K     +   + T    F  + P+ +    G  
Sbjct: 953  VVMLLYIDAEVRKANPSDRSQLFAAVSKGAAMRVRPKLMTVTTIFAGLAPIFLTDGLGSD 1012

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            V+   A+PM  G+      S+ +   I   
Sbjct: 1013 VMRRIALPMLGGMASTLILSLIVIPAIYYI 1042


>gi|222100689|ref|YP_002535257.1| Protein-export membrane protein SecD precursor [Thermotoga
           neapolitana DSM 4359]
 gi|221573079|gb|ACM23891.1| Protein-export membrane protein SecD precursor [Thermotoga
           neapolitana DSM 4359]
          Length = 465

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 118/490 (24%), Positives = 203/490 (41%), Gaps = 71/490 (14%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVN---GFLQMYSDELRSFLKKEGIGVFSM----RQ 93
            + I LGLD++GG+ +   V+ ++        +      LR+ L   G    S+    R+
Sbjct: 31  TSNIRLGLDIKGGARIEYLVEVEEGTETPSDVVDDVWTVLRNRLDAAGYTEASVKKVFRE 90

Query: 94  IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
            ++ I +    +         +        ++                     +      
Sbjct: 91  NRSYIVVEIPGATDTVQAEKLIGSTGVLYFAQ---------------------VLDEYDG 129

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
           +      E S+E  R++   +   +                       +++ +     + 
Sbjct: 130 EDPYKVPELSLEAKREKATWLKGRDGKWY------------------LVKKEIMGRKDLV 171

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
                P           R  R      + +                              
Sbjct: 172 --LEAPRIVYARPEVETRAGRYGYKVSFELAK-----------------------EYVDK 206

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
           F ++    +      +  K LA+VLD  V  A  +   IP GKA+I+GNF++E A  LAA
Sbjct: 207 FKKITQALYVPEGTYDPKKRLAIVLDDVVQFAGQVVAIIPDGKAEITGNFSLEEAKQLAA 266

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
           +LR+G+LP +L       V   LG D I     A + GL+L++++M+V Y   GLVAD +
Sbjct: 267 ILRSGALPARLVKTSSGWVAPLLGRDVIDASLKAGIMGLILVLVYMLVYYRTMGLVADLA 326

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           +  N IL L +++     LTLP IAGI+L IG  VD N+++ ERI+EE R  + V  S+ 
Sbjct: 327 LIYNTILLLGVMAAGKFILTLPGIAGIILTIGTTVDGNVIIYERIKEEMRSGKPVKTSIA 386

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            GF R+ STI D+NIT ++  ++L++FG G ++GFAIT+ + +L S+F  +   R ++  
Sbjct: 387 AGFDRSLSTILDANITTILTGLILYYFGTGTIKGFAITLIIGVLGSIFVNLVFSRLLLDS 446

Query: 514 IIRYKKMKSI 523
           +    K   +
Sbjct: 447 LAPLIKPPRV 456



 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 105/309 (33%), Gaps = 10/309 (3%)

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           K      L         +  + M  +   +    +               Y + F+   +
Sbjct: 143 KREKATWLKGRDGKWYLVKKEIMGRKDLVLEAPRIVYARPEVETRAGRYGYKVSFELAKE 202

Query: 581 LGVLANRPVDL----SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
                 +               + L I       F G+   ++                +
Sbjct: 203 YVDKFKKITQALYVPEGTYDPKKRLAIVLDDVVQFAGQVVAIIPDGKAEITGNFSLEEAK 262

Query: 637 MVKKKITEIVPLSTIQNTEIVG--PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
            +   +      + +  T      P + R++I   +   I+  I +L+Y+ + ++    L
Sbjct: 263 QLAAILRSGALPARLVKTSSGWVAPLLGRDVIDASLKAGIMGLILVLVYMLVYYR-TMGL 321

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            A   LI +    LG  A       L  +A ++  IG +V+  V++Y+R+++ M+   + 
Sbjct: 322 VADLALIYNTILLLGVMAAGKFILTLPGIAGIILTIGTTVDGNVIIYERIKEEMR---SG 378

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
              +  I    + +L   +  ++   ++ L +  +G   I  FAI +  G++ +   ++ 
Sbjct: 379 KPVKTSIAAGFDRSLSTILDANITTILTGLILYYFGTGTIKGFAITLIIGVLGSIFVNLV 438

Query: 815 IAAPILLFI 823
            +  +L  +
Sbjct: 439 FSRLLLDSL 447


>gi|167588447|ref|ZP_02380835.1| acriflavin resistance protein [Burkholderia ubonensis Bu]
          Length = 736

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/636 (11%), Positives = 166/636 (26%), Gaps = 48/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  PS                  ++   
Sbjct: 8   LRRPYTFIVMAIMIVL-----ATPLALMRTPVDVLPSIDIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSFL-----KKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           + +      +      +   +             +       + +        +    + 
Sbjct: 50  NYNGLSAKEMTNRITAVHERVLTTTVNNIQHVESTTLPGTAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +   +   +     Q+ 
Sbjct: 110 VSSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSQTLSEQS--LADIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + D   L     T A +       N         +     
Sbjct: 168 TIPGAQVPFPYGGRTRVVAVDIDSKALMSKGLTPADVVNAVNAQNLVLPTGTAKMGQTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +IS                     I    +     +      +    +
Sbjct: 228 RVDTNASADTIADIS--------------------HIPLQTVNGATTYLGEVAAVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLVSILKSGDASTLKVVSDLKALLPKVVPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  L+ LG T+ + 
Sbjct: 328 DAAVRGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALAALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I         +  ++  G        F S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGSGLHDAILEGAGEIAVPAFVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  M + + R ++         SRF 
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYVLSRTLVPTMAMLLFRPQQASVGSAQSTSRFA 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I       F R R   + +  L  +              +     + LG       D  
Sbjct: 508 RIHHRFNHAFERLRASYIVLLSLLLVRRRFYAMCFLGFCVLSTGLVLALGRDFFPNADSG 567

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P D 
Sbjct: 568 NIRLHMRAPTGYRIEETARLADQVERVVREVVPPDE 603



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/379 (12%), Positives = 117/379 (30%), Gaps = 6/379 (1%)

Query: 447 SVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           S   ++     + A   +  +   + I  + L              + L+ L      I 
Sbjct: 111 SSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSQTLSEQSLADIALNFLRPQLITIP 170

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
             +    +  R + +     +       +     +  + A+   +         +   + 
Sbjct: 171 GAQVPFPYGGRTRVVAVDIDSKALMSKGLTPADVVNAVNAQNLVLPTGTAKMGQTEYRVD 230

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
           T+     I     I L  +      L  V +  +         +        +  L+   
Sbjct: 231 TNASADTIADISHIPLQTVNGATTYLGEVAAVRDGFSPQTNVVRQNGQRGVLVSILKSGD 290

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYI 684
             ++     L+ +  K+   +P                  +R  I   +I + +  ++ +
Sbjct: 291 ASTLKVVSDLKALLPKVVPTLPEGLTITPLFDQSVFVDAAVRGVIHEALIAAVLTAMMIL 350

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   L    ++ L I  +L   A  G   N+  +  +   +G  V+D  V  + +
Sbjct: 351 LFLGNWRSTLIIAISIPLSIFTSLIALAALGETINIMTLGGLALAVGILVDDATVTIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +++ L        D I +   E    +  +++   I  +PM    G     F +P+A  
Sbjct: 411 ERHLHL---GSGLHDAILEGAGEIAVPAFVSTLCICIVFVPMFFLTGVARYLF-VPLAEA 466

Query: 805 IVVAASSSIFIAAPILLFI 823
           +V A  +S  ++  ++  +
Sbjct: 467 VVFAMLASYVLSRTLVPTM 485


>gi|108799243|ref|YP_639440.1| preprotein translocase subunit SecD [Mycobacterium sp. MCS]
 gi|119868359|ref|YP_938311.1| preprotein translocase subunit SecD [Mycobacterium sp. KMS]
 gi|126434901|ref|YP_001070592.1| preprotein translocase subunit SecD [Mycobacterium sp. JLS]
 gi|108769662|gb|ABG08384.1| protein-export membrane protein SecD [Mycobacterium sp. MCS]
 gi|119694448|gb|ABL91521.1| protein-export membrane protein SecD [Mycobacterium sp. KMS]
 gi|126234701|gb|ABN98101.1| protein-export membrane protein SecD [Mycobacterium sp. JLS]
          Length = 598

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 117/572 (20%), Positives = 209/572 (36%), Gaps = 65/572 (11%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---FV 66
           L   +  +     L         D            LG+DL+GG+ + L     D     
Sbjct: 14  LSLFLVLLVGAFLLVFLTGDKKADP----------KLGIDLQGGTRVTLTARTPDGSPPS 63

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQGV-- 122
              L      + + +   G+    +    + + ++    D     N+     L+++ V  
Sbjct: 64  RESLAQAQQIISARVDGLGVSGSEVVVDGDNLVITVPGNDGNEARNLGQTARLYIRPVVH 123

Query: 123 -----------------------------NSKLNVDPKKNL---------------LVTT 138
                                           L     +                     
Sbjct: 124 AMQAQPAAARDGQQPAQPAQPGQPQQAPGLPGLPGLVPQQPGQPEQAPPPAAPPAETPPA 183

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
            +          +  +        +                  +   + RI  +    Q 
Sbjct: 184 PQPRPYPQQPAPSPTEPSPAPAPPAPAGPATPAPSPTPGPPNKRADLAQRIADEKQLRQS 243

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
                QLL    + +        +             +DG    + +K  ISG  +  A+
Sbjct: 244 TDPSIQLLALQFQATRCGEDDVLAGNDDPNLPLITCSTDGQTVYLLNKSIISGEQIANAS 303

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQ 318
           +  D +  + +VD+ F    A+ + + T  N+G   A  LD +V++AP I +AIP G+ Q
Sbjct: 304 SGLDNQRGEYIVDLEFKSDAAKIWADFTAANVGTQTAFTLDSQVVSAPEIQEAIPGGRTQ 363

Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378
           I+G FT ++A  LA +L+ GSLP+     E   V A LG  S+  G  A   GL  ++L+
Sbjct: 364 INGRFTADSARELANVLKYGSLPLSFESSEAETVSATLGLASLKAGLIAGAVGLAAVLLY 423

Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGIVLGIGLAVDSNILV 434
            ++ Y   G++   S+  +  +  A+L LL      TL L  IAG+++GIG   DS ++ 
Sbjct: 424 SLLYYRLLGVLIALSLVASGAMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVF 483

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
            ERI++E R+ +S   ++  G++RA  TI   N    +A  VL+F   G V+GFA T+GL
Sbjct: 484 FERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAVGQVKGFAFTLGL 543

Query: 495 SILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           + ++ +     +   ++    +         N
Sbjct: 544 TTILDVVVVFLVTWPLVYLASKTTWAAKPKFN 575



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 48/151 (31%), Gaps = 23/151 (15%)

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK-------------- 737
             L A+    L   + LG      +  +   V A+L L+G  +N                
Sbjct: 415 VGLAAVLLYSLLYYRLLGVLIALSLVASGAMVFAILVLLGRYINYTLDLAGIAGLIIGIG 474

Query: 738 ------VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
                 VV ++R++  ++      SFR  + +         V  +   F++   +     
Sbjct: 475 TTADSFVVFFERIKDEIRE---GRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAV 531

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             +  FA  +    ++       +  P++  
Sbjct: 532 GQVKGFAFTLGLTTILDVVVVFLVTWPLVYL 562


>gi|332701518|ref|ZP_08421606.1| acriflavin resistance protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332551667|gb|EGJ48711.1| acriflavin resistance protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 1036

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 154/524 (29%), Gaps = 37/524 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++   ++   G +  +      S     P                          
Sbjct: 10  KPVTVIVGVILVVMFGAIALMGMPYQLSPTVTTPEITVTTY--------------WTGAT 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +++   +               +ITL F  S   ++   +V+  +  V
Sbjct: 56  PYEIERDIVEEQEKVLKGVTGLEEMESECFNGFARITLRFELSTDVDDALLRVSNKMNEV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQN-NIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
                   +K ++  T      +V +    +     H          +    +   +   
Sbjct: 116 R-ITPEGAEKPVISATGSNTSPVVWTMLKTLPGNPRHIATYQTYFENEVRQYLERVDGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++    +P +L     T + +       N +      G+           
Sbjct: 175 ELFVGGGTEDEMHVVVEPEKLASYGLTVSDVMSVLREENINISAGTLGLGRRDYRIRTVA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   EI                    + ++          +V R   G      +   
Sbjct: 235 QFQSPQEIE------------------ELVLTSTGQRTVHLRDVGRVLPGYAKEQAVIMV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                ++    P   A +        A +                          G+  +
Sbjct: 277 NAEPGIVVAIRPEPGANVLELTDKAEAVVKELNAGKLKEQGLYIDWNYDQRAYIRGAIDL 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   L ++VL + +  G+  L+   +I ++V+ +   LS LG T+ + S+AGI 
Sbjct: 337 VRQNILIGGLLAVVVLLVFLQSGRATLIVAAAIPISVVGSFIFLSALGRTMNVVSMAGIS 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
             +G+ VD+ I+V E I       +S F +   G    +  +  S +T +   + + F  
Sbjct: 397 FAVGMLVDNAIVVLENIDRHRSLGKSSFDAAYDGAKEVWGAVLASTLTTVAVFLPVVFVQ 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G   +  AI +  +IL+SM  +++++  M  ++    K   
Sbjct: 457 EEAGQLFKDIAIAVTCAILLSMLVSVTVIPMMARYLYGSAKKAK 500



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 87/264 (32%), Gaps = 21/264 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     R V +S +     +  I  I            +          A   +   + 
Sbjct: 775  LVSTPGGRAVPVSFLAELQRTYGITQIRHLERQRAITLEITPPADTPLQQAMETLENQII 834

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
              + +   L+ +               +      +++ +   + +   F  + + L  + 
Sbjct: 835  PAVRQQGLLANVDVGMSGAADKLSVTRQALQWNFLLALVITYLLMAALFGNFIYPLIILF 894

Query: 699  TLILDITKTLGFFALFGI----------EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            T+ L      G     G+            ++  +   + L+G  VN+ +++  +   N+
Sbjct: 895  TVPL-----AGAGGFLGLKLENWFIAPQPMDILTMLGFVILVGVVVNNAILIVHQSLNNI 949

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            + +   +  R+ + +S+   +     ++  +   +LP+A+    G  +       +  G+
Sbjct: 950  REH--GMEHREAVLESVRTRIRPIYMSATTSIFGMLPLAIAPGPGSELYRGLGSVVLGGL 1007

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
             ++   +IF+   +L+F      +
Sbjct: 1008 AISTIFTIFVIPSLLMFFIGMEKR 1031



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     + + +  +  F +  G   N+ ++A +   +G  V++ +VV + +    + 
Sbjct: 360 RATLIVAAAIPISVVGSFIFLSALGRTMNVVSMAGISFAVGMLVDNAIVVLENI---DRH 416

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
            +   S  D       E  G  + +++      LP+       G +    AI +   I++
Sbjct: 417 RSLGKSSFDAAYDGAKEVWGAVLASTLTTVAVFLPVVFVQEEAGQLFKDIAIAVTCAILL 476

Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831
           +   S+ +   +  ++Y    K  
Sbjct: 477 SMLVSVTVIPMMARYLYGSAKKAK 500


>gi|254524863|ref|ZP_05136918.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
 gi|219722454|gb|EED40979.1| RND transporter, HAE1/HME family, permease protein
           [Stenotrophomonas sp. SKA14]
          Length = 1040

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/584 (11%), Positives = 152/584 (26%), Gaps = 38/584 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +GL+  L   +        P                  H      
Sbjct: 9   RRPIGTALLAIGLFMVGLICYLRLGVSALPNIEIPVIF--------------VHASQSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + + F      ++ A  V   +  
Sbjct: 55  DAATMATTVTAPLERHLGQLPGIDRMRSSSSEGSSLVFMIFQSGHNIDSAALDVQTAINS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L       +       +  ++            A E           +I       
Sbjct: 115 AQADLPSGMGSPMYQKANPNDDPVIAIALTSQ--TQSADELYNVADSLLAQRIRQIGGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + +   +  L  T   +       N +             +     
Sbjct: 173 SVDIAGASTPAVRVDVNLRLMNALGLTADDLRNAVRAANVTSPTGFLSDGNTTTAIIAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                       +   +   R        N+           
Sbjct: 233 SVARAAD-------------------FADLVVKTQGDGRVIRLKDIANVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR    P                S   
Sbjct: 274 WFDHKPAVVMYVFTRAGANIVETVDRVKAQIPTLRDYLQPGTTMTPYFDRTPTIRSSLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++     ++ ++G TL   S+  +V
Sbjct: 334 VQITLLISLAMVVLTMALFLRRLAPTLIAAVTVPLSLAGAALVMYVMGFTLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG  VD  I+V E I     +      +   G      TI     + +   + L F  
Sbjct: 394 IAIGFVVDDAIVVIENIMRHLDEGMPRMQAALTGAREIGFTIVSITASLVAVFIPLLFAS 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F +T+  +I++SM  ++++  A+    +      +             + +
Sbjct: 454 GMMGAFFREFTVTLVAAIVVSMIVSLTLTPALCSRFLSAHDHAAPPSRFGRWLDAGHERM 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              +     + +  ++L S+  + L+      +G   KG     
Sbjct: 514 LRVYTVFLDFSLRHALLMSLTPLILIGVTVFLFGAVKKGAFPPQ 557



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 80/246 (32%), Gaps = 10/246 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L V       +  ++           ++Q    +    V +             ++ VK 
Sbjct: 243 LVVKTQGDGRVIRLKDIANVYDGQQDAYQAAWFDHKPAVVMYVFTRAGANIVETVDRVKA 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFA-LGA 696
           +I  +        T       +  +        + ++IS   +++ + +  +     L A
Sbjct: 303 QIPTLRDYLQPGTTMTPYFDRTPTIRSSLHEVQITLLISLAMVVLTMALFLRRLAPTLIA 362

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             T+ L +        + G   N  ++ A++  IG+ V+D +VV + +   M+     + 
Sbjct: 363 AVTVPLSLAGAALVMYVMGFTLNNLSLLALVIAIGFVVDDAIVVIENI---MRHLDEGMP 419

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
                     E     V  + +     +P+       G+    F + +   IVV+   S+
Sbjct: 420 RMQAALTGAREIGFTIVSITASLVAVFIPLLFASGMMGAFFREFTVTLVAAIVVSMIVSL 479

Query: 814 FIAAPI 819
            +   +
Sbjct: 480 TLTPAL 485



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 82/247 (33%), Gaps = 11/247 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +       V ++ V + +  L    I+ +N     +    L        A+  +   V  
Sbjct: 775  VRARNGDMVPITAVATQIPGLAPSQITHENQYTTMDLSYNLAPDVSMGEAKAIIDATVAG 834

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                                 S  L    I+ +       L+   +       +  ++TL
Sbjct: 835  MRMPGDIRLADDAGFGFNSDPSDML----ILVLAAILTVYLVLGMLYESLIHPVTILSTL 890

Query: 701  -ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
                +   L  F     E ++ ++ A++ LIG    + +++ D     +      ++ RD
Sbjct: 891  PAAGVGALLALFG-TNTELSVISMIALVLLIGIVKKNAIMMID--FALVAQREHGLAPRD 947

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
               ++        + T+M A ++ +P+A+    G  +     I M  G++ + S ++   
Sbjct: 948  AAREASIVRFRPIMMTTMVAILAAVPLAIGLGEGSELRRPLGIAMIGGLLFSQSLTLLST 1007

Query: 817  APILLFI 823
              + +  
Sbjct: 1008 PALYVIF 1014


>gi|119898626|ref|YP_933839.1| RND efflux transporter permease [Azoarcus sp. BH72]
 gi|119671039|emb|CAL94952.1| RND efflux transporter, permease protein [Azoarcus sp. BH72]
          Length = 1044

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/516 (12%), Positives = 142/516 (27%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   +  +GL         Q      P                     L   
Sbjct: 9   RRPVATVLLTLGVALVGLAA-----FFQLPAALLPQVDYPVI---------SVRASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   + M  +     +               ++ L F  SR  +  A  +   +  
Sbjct: 55  SPDTMAASVAMPLERALGSIAGVNEITSRSSLGSTEVVLQFDLSRDIDGAARDIQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L      N  +  +    S +L    +   +    +     +     ++   E   
Sbjct: 115 SRSQLPSGMAGNPTLRKSNPNDSPILI-LAMTSDVLSRTQIYDAAVTILAQKLAQVEGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +  E +P  L +   +   +       N ++              G   
Sbjct: 174 QVSVGGSSLPAVRVELNPLALARSGVSAETVRGAIASGNVNRPKGFVEDGGRHWQIGAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 + +                     +                 +      + +  
Sbjct: 234 QALSAADYT--------------------PMIVRWQQGAALRLSDVAEVRDGAQELRNAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V +       + + +   +   T++    L   L+A   P     V +        S   
Sbjct: 274 VASGRPAVLLMVNRQPNANIIATVDHILKLLPELQAAIPPQIRLEVSQDRSTTVRASLRD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +   LV++V+   +   +  L+   ++ + ++ TLAL+ L G ++   S+  + 
Sbjct: 334 VGVCLVLSVLLVVLVVIGFLRDRRAALIPAVTVPVALVGTLALMYLAGFSINNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  ++V E          S   +   G      T+    ++     + + F  
Sbjct: 394 VAAGFVVDDIVVVLENTTRHIEHGLSPLQAALRGVGEVSGTLVSMALSLAAVFIPIIFME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G     FA+T+  +I +S+  +I+    +   +
Sbjct: 454 GVVGRLFGEFALTLVAAIGVSLLLSIATAPMLCSRL 489



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/139 (21%), Positives = 52/139 (37%), Gaps = 6/139 (4%)

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           I        AL    T+ + +  TL    L G   N  ++ A+    G+ V+D VVV + 
Sbjct: 350 IGFLRDRRAALIPAVTVPVALVGTLALMYLAGFSINNLSLMALTVAAGFVVDDIVVVLEN 409

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIP 800
                +     +S      + + E  G  V  +++     +P+    G V      FA+ 
Sbjct: 410 ---TTRHIEHGLSPLQAALRGVGEVSGTLVSMALSLAAVFIPIIFMEGVVGRLFGEFALT 466

Query: 801 MAFGIVVAASSSIFIAAPI 819
           +   I V+   SI  A  +
Sbjct: 467 LVAAIGVSLLLSIATAPML 485



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 76/193 (39%), Gaps = 8/193 (4%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                 +   + ++   S+I  +     +  +      ++ ++ + +A+ + + I ++   
Sbjct: 823  EATRAITAAMAQLGVPSSIFGSFEGAARAFQSAGNSQLLLILAAIVAVYLVLGILYESLL 882

Query: 693  ALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                I + +    I   L   A FG EF + A+  V+ L G  + + +++ D        
Sbjct: 883  HPLTILSTLPSAGIGAVLALLA-FGTEFTVIALIGVILLAGIVMKNAIMMID--FALHAQ 939

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
             +  ++ R+ I  +        + T+ AA +  LP+A+    G  +     I +  G++V
Sbjct: 940  RSRGLAPREAILDACVLRFRPIMMTTAAAILGALPLALGSGDGAELRQPLGIAIVGGLLV 999

Query: 808  AASSSIFIAAPIL 820
                +++    + 
Sbjct: 1000 GQWLTLYTTPVVY 1012


>gi|54308196|ref|YP_129216.1| putative cation efflux system transmembrane protein [Photobacterium
           profundum SS9]
 gi|46912624|emb|CAG19414.1| putative cation efflux system transmembrane protein [Photobacterium
           profundum SS9]
          Length = 1041

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/591 (11%), Positives = 162/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N ++V++ ++      + ++ N    + +D  P       I                  
Sbjct: 11  KNRFMVLVATLFLVAAGIYSVKN----TPIDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL    K  L    T                     E           ++   +   +
Sbjct: 118 APKLPPSAKPTLGPDATGVGWVYSYV-LTDKSGKHDLSELRSMQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DPS+LR    T  +++      N      +  V            
Sbjct: 177 IATVGGMVKQYQVQIDPSKLRAYNLTLQQVNKAIQAGNQEAGASVIEVAEAEHMVRATGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + +  ++                    V +   + G         D    P        +
Sbjct: 237 ISNISDLKN------------------VPLKVTDKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +    I       A L+         +      G    +    
Sbjct: 279 NGEGEAVGGIIVMRYGENAREVIHNVKAKLAELQRSLPDGVEIVPTYDRSGLIDNAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V++V  + + + +  LV   S+ + +++   ++   G    + S+ GI +
Sbjct: 339 YKKLMEEFIVVIVVCALFLFHIRSSLVIMISMPIGILVAFIIMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    N++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTNKNRWQVITKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AI++V  +M + IR   +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAASAGLAITLVPVLMGYFIRGNILPEHKNPVNRAVVGLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    +R     + ++I     +   +   G  +      G  + +   
Sbjct: 519 RPLLNLSLRFPKAIIIVAIALMASAYYPIHKMGSEFIPPLDEGDLMYMPTT 569



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 82/291 (28%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +D    + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQEYRNSLDKLQNLPLVTPNGARIALADVADVRFEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               + ++ +   S  +     + ++                   +    L    +V   I
Sbjct: 816  WVFIDIEGRDLGSYVKEAQQRVAEQLKLPAGYSLVWSGQYEYMERAKARLTT--VVPATI 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYS 733
            + I +L+Y+  R         I    L +    G     +    F++      + L G +
Sbjct: 874  AIIMVLLYLSFR---RVGEVMIIMGTLPLAMVGGLWLMHILNYNFSIAVGVGFIALSGVA 930

Query: 734  VNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++   +           +  +   +       I +     +   + T     I +
Sbjct: 931  VEIGVIMLVYLNQAWHYKQLHAEENQQTLSKADLATAIKEGAGLRVRPVMMTVATVIIGL 990

Query: 784  LPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+   GG    V+   A PM  G+  A   ++ +   +     +   K  
Sbjct: 991  IPIMYGGGTGSEVMQRIAAPMIGGMASALLLTLVVLPAVFKLWKEVSHKLK 1041



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 66/155 (42%), Gaps = 2/155 (1%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + +++     F    +L  + ++ + I          GI  N+ ++  +   IG  V+
Sbjct: 346 FIVVIVVCALFLFHIRSSLVIMISMPIGILVAFIIMHWQGINANIMSLGGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
             +V+ + + K+++    T+ +   +I K+  E      ++ +   +S +P+    G   
Sbjct: 406 GAIVMIENVHKHIERTPLTNKNRWQVITKAAEEVGAPLFFSLLIITLSFVPVFALEGQEG 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             F+ P+AF    A ++S  +A  ++  +  +  +
Sbjct: 466 KMFS-PLAFTKTYAMAASAGLAITLVPVLMGYFIR 499


>gi|88703610|ref|ZP_01101326.1| AcrB/AcrD/AcrF family protein [Congregibacter litoralis KT71]
 gi|88702324|gb|EAQ99427.1| AcrB/AcrD/AcrF family protein [Congregibacter litoralis KT71]
          Length = 1016

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 79/686 (11%), Positives = 195/686 (28%), Gaps = 46/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L ++I   GL       L +  L  FP                    V    
Sbjct: 9   RRPVLAVVLSALILIAGLAS-----LGKITLREFPELERSVI---------SVTTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               + GF+        +  +       S     + I +         ++  +V   +  
Sbjct: 55  NSRTIQGFVTTPLQVNIAGARGVEYISSSSNPGVSAIQVHVRLGENTSDVLTEVIAKVNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++ T      +++      D       + +  ++R    ++   E   
Sbjct: 115 ARDELPDDILDPVISTA-GSGDAMMYLAFVSD--QMTPFQVTDYLLRSVQPELATIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R  + +    DP R+  L  T   ++      N           +         
Sbjct: 172 KAGIFGR-YLAMRIWLDPVRMAALNVTANDINAAIRRDNVISTAGATEGEW--------- 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V ++   + G     + +       +   +   R+        +          +
Sbjct: 222 -----VRVTVDAVTGMRTAKEFQ------SLVVRQDRDRQVRLGDVAEVELAAENNQSRQ 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +         +     +          +   + A        I++  +  A   +   
Sbjct: 271 STSGRDTVFMSITTAPDANPLSVSAAVHEILPAIEANLPADLEVIMDWDSSVAIDDALQE 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  L+   +I L+++  + L+  +G +L L ++  +V
Sbjct: 331 VINTLLEAGVIVILVIFLFLGSIRVVLIPLVAIPLSLVGVVFLMLSMGFSLNLLTLLAMV 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IGL VD  I+V E +     +  +   +   G       +    +T       + F G
Sbjct: 391 IAIGLVVDDAIVVVENVHRHIEEGATPIQAAIDGAREVALPVIAMTVTLAAVYAPIAFIG 450

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G     FA+T+  ++L+S   A+++   M          + +   ++D         
Sbjct: 451 GLTGALFSEFALTLAGAVLVSGVVALTLSPMMASRFLKAQGDQGRFADALDGFFHRMNRG 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +           +  + +        L +       +  G + +   A    +L  
Sbjct: 511 YQGLLEHCLANRGAVMMFAAGIILSLPTLFLISQRELAPEEDTGSLYVVGSAPSYANLDY 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V   L+ +                        G ++   R  E  ++++   +       
Sbjct: 571 VSVFLDQVVDIWKDIPEIQSSWQVAQPDSNFGGLNMTPWRKRERSQQEVQRELQAKLGGV 630

Query: 654 TEIVGPKISRELIRKGIVGVIISAIA 679
           + +         +     G+ +S + 
Sbjct: 631 SGMEMFSFGNPALPGSDSGLPLSFVV 656



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 83/251 (33%), Gaps = 7/251 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +R V L  V     + +           +  F+        + ++ +  +  +   I   
Sbjct: 248 DRQVRLGDVAEVELAAENNQSRQSTSGRDTVFMSITTAPDANPLSVSAAVHEILPAIEAN 307

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           +P       +        + +++ I  ++    I +L+           L  +  + L +
Sbjct: 308 LPADLEVIMDWDSSVAIDDALQEVINTLLEAGVIVILVIFLFLGSIRVVLIPLVAIPLSL 367

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              +      G   NL  + A++  IG  V+D +VV + +    +      +        
Sbjct: 368 VGVVFLMLSMGFSLNLLTLLAMVIAIGLVVDDAIVVVENVH---RHIEEGATPIQAAIDG 424

Query: 765 INETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             E     +  ++       P+A  G   G++   FA+ +A  ++V+   ++ ++  +  
Sbjct: 425 AREVALPVIAMTVTLAAVYAPIAFIGGLTGALFSEFALTLAGAVLVSGVVALTLSPMMAS 484

Query: 822 FIYDWRAKNAR 832
                +    R
Sbjct: 485 RFLKAQGDQGR 495



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 66/174 (37%), Gaps = 10/174 (5%)

Query: 664  ELIRKGIVGVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNL 720
             +       ++ +   +LI++ +      +   L  +  + L I   +   A+  +  N+
Sbjct: 836  YVQESATFPLLFAMSLVLIFLVLAAQFNSFRDPLVVLVAVPLSIFGAMLPIAMGFMTLNI 895

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 +LTLIG      +++ +      +L       R  + +S    L   + T+ A  
Sbjct: 896  YTQVGLLTLIGLIAKHGILIVEFAN---QLVLEGADRRSAVLQSATLRLRPILMTTFATV 952

Query: 781  ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + VLP+ +    G +      + +  G+++    ++F+  P++   +      A
Sbjct: 953  LGVLPLVLAAGPGANARFGIGLTITAGMLIGTLFTLFVL-PVMYLPFRRDKAPA 1005


>gi|258542059|ref|YP_003187492.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256633137|dbj|BAH99112.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636194|dbj|BAI02163.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639249|dbj|BAI05211.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642303|dbj|BAI08258.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645358|dbj|BAI11306.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648413|dbj|BAI14354.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651466|dbj|BAI17400.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654457|dbj|BAI20384.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 1102

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 154/521 (29%), Gaps = 38/521 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +   G+L           +   P+      +                  
Sbjct: 10  RPVATILLTVAMLLGGIL-----GYRTLPVSDLPNVDFPVIM---------VQATQAGGS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +           Q   +I L F+ SR     A  V   LQ  
Sbjct: 56  PEEIASSVAAPLERHLGQIADVTEMTSQSSQNTTRIMLQFSLSRDINGAARDVEAALQAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           ++ +    ++N          + +L    +        +         +  +       Q
Sbjct: 116 HADMPSSLRQNPTYRKANPNGAPILI-LTLTSDTHTRPQLYDYATNVLVQHLSSVAGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   L  +  E +P  L +   +   +       N                      
Sbjct: 175 VEISGSALPAIRAEINPLPLYRYGISFEDVRAALASANAHTP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +   G        N      +   D+      +R         +   +  + +   
Sbjct: 217 --KGIIDQGGMRFTLDTNDQVSKAQDYRDLIIAWRNSRPVRLADIAQVRDSVEDLRNAGY 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A+   +A  +   T++       ML+A         V          S +  
Sbjct: 275 YNGQDSVIAVVFPQAGANVIHTVDQINAKLPMLKAALPGGVDLHVGLDRSLTIRASLADT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++++ + +   +  L+    +  +++ T  +++L G +L   S+  + +
Sbjct: 335 QFTLVISVVLVVLMVLLFLHSVRMTLIPAIVVPASIVATFGVMALFGYSLDNMSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  +   +   G      T+F  +I+ +   + +   G 
Sbjct: 395 STGFVVDDAIVVVENIARYIEQGLAPREAAIKGSGEVAFTVFSISISLIAVFLPILLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             G     FA+T+ ++I+ISM  ++++   M  +++  +  
Sbjct: 455 LAGRLFHEFAMTVSITIIISMVLSLTLTPMMAAYLLAPRAP 495



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 55/138 (39%), Gaps = 6/138 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     +   I  T G  ALFG   +  ++ A+    G+ V+D +VV + +    
Sbjct: 355 SVRMTLIPAIVVPASIVATFGVMALFGYSLDNMSLMALTVSTGFVVDDAIVVVENI---A 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
           +     ++ R+   K   E        S++     LP+ + GG        FA+ ++  I
Sbjct: 412 RYIEQGLAPREAAIKGSGEVAFTVFSISISLIAVFLPILLMGGLAGRLFHEFAMTVSITI 471

Query: 806 VVAASSSIFIAAPILLFI 823
           +++   S+ +   +  ++
Sbjct: 472 IISMVLSLTLTPMMAAYL 489



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 6/165 (3%)

Query: 673  VIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ +  A+ I + I ++ Y   L  ++TL       L    L G EF+L A+  V+ LIG
Sbjct: 926  ILAALCAVYIVLGILYESYLHPLTILSTLPSAGVGALLALQLAGEEFSLIAMIGVILLIG 985

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
                + +++ D     +      +S  + I  +        + TS AA +   P+ +   
Sbjct: 986  IVKKNAIMLVD--FALVAEREHGMSSLEAIRTACLLRFRPIIMTSAAAALGAAPLMITNG 1043

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +G  +     I +  G++V+ + +++    I L +  WR +  +I
Sbjct: 1044 YGAELRHPLGIAIVGGLLVSQALTLYTTPVIYLTLDTWRLRVQKI 1088


>gi|260887828|ref|ZP_05899091.1| protein-export membrane protein SecD [Selenomonas sputigena ATCC
           35185]
 gi|260862434|gb|EEX76934.1| protein-export membrane protein SecD [Selenomonas sputigena ATCC
           35185]
          Length = 422

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 143/383 (37%), Positives = 231/383 (60%), Gaps = 27/383 (7%)

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  L       + +        QV   A+++ ++I+ +R++++G++E  IQR G  RI+I
Sbjct: 40  RQGLDLQGGTHVVLEAVDTPEAQVNDDAMQRVVKIMEKRVNELGLTEPLIQRQGERRIII 99

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPG +DP    + +G TA + F                                  ++G
Sbjct: 100 ELPGIKDPDSAIKTIGKTAMLEFKDED--------------------------GNTVMTG 133

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             L     +   + ++ VV++ F + GA++F ++T  N+G+ +A++LDG VLT P + + 
Sbjct: 134 TDLKN-AQDARNQQNQYVVNLEFSDEGAKKFADLTTKNVGRRIAILLDGEVLTNPNVREP 192

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           I  G+A+I+G  + E A  +A +LR+G+LP+K+NI+E R VG  LG DS  K   A V G
Sbjct: 193 ITGGRAEITGQESQEEAHRIAMLLRSGALPVKVNIIETRTVGPTLGQDSKDKSEFAFVIG 252

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           +  +++FMI+ Y   GL+AD S+   VIL L LL +L ATLTLP +AGI+L IG+AVD+N
Sbjct: 253 ISAVLVFMILFYRLSGLIADLSLMAYVILLLFLLKMLDATLTLPGVAGIILSIGMAVDAN 312

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ E  +EE R  +++  S++ GF RA++TIFDSNIT +IA +VLFFFG G ++GFAIT
Sbjct: 313 VLIFEHFKEEFRLGKTLRLSMEAGFKRAFTTIFDSNITTIIAALVLFFFGTGTIKGFAIT 372

Query: 492 MGLSILISMFTAISIVRAMMIFI 514
           +GL +++SM TAI++ + M+  +
Sbjct: 373 LGLGVVLSMLTAITLTQYMLKLL 395



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 82/199 (41%), Gaps = 4/199 (2%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    +      +  +   +     I  T  VGP + ++   K     +I   A+L+++
Sbjct: 201 TGQESQEEAHRIAMLLRSGALPVKVNIIETRTVGPTLGQDSKDKSEFAFVIGISAVLVFM 260

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++    L A  +L+  +   L    +      L  VA ++  IG +V+  V++++  
Sbjct: 261 ILFYRLS-GLIADLSLMAYVILLLFLLKMLDATLTLPGVAGIILSIGMAVDANVLIFEHF 319

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           ++  +L     + R  ++            +++   I+ L +  +G   I  FAI +  G
Sbjct: 320 KEEFRL---GKTLRLSMEAGFKRAFTTIFDSNITTIIAALVLFFFGTGTIKGFAITLGLG 376

Query: 805 IVVAASSSIFIAAPILLFI 823
           +V++  ++I +   +L  +
Sbjct: 377 VVLSMLTAITLTQYMLKLL 395



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 49/129 (37%), Gaps = 17/129 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R +  L ++  +   +G+  A  + L              N I  GLDL+GG+H+VLE 
Sbjct: 9   LRQDALLKLIAVIAVIVGVFFAFVSPL-------------ANSIRQGLDLQGGTHVVLEA 55

Query: 60  VDEDD--FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
           VD  +    +  +Q     +   + + G+    +++    +I +     +  ++    + 
Sbjct: 56  VDTPEAQVNDDAMQRVVKIMEKRVNELGLTEPLIQRQGERRIIIELPGIKDPDSAIKTIG 115

Query: 117 LFLQGVNSK 125
                    
Sbjct: 116 KTAMLEFKD 124


>gi|299133844|ref|ZP_07027038.1| acriflavin resistance protein [Afipia sp. 1NLS2]
 gi|298591680|gb|EFI51881.1| acriflavin resistance protein [Afipia sp. 1NLS2]
          Length = 1035

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 68/566 (12%), Positives = 147/566 (25%), Gaps = 46/566 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK----NRISLGLDLRGGSHLV 57
           R      +L   +  +G +           +   P+        +    G D        
Sbjct: 9   RRPVGTTLLAIGLFLVGAVA-----YVNLPVASIPNVDFPMIRVSASRPGAD-------- 55

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +   +    +     +        S       I + FA  R  +  A  V  
Sbjct: 56  -----PSVMAATVAAPLERKLGEIAGVDQITSSSSLGTTSIQMQFAIGRSIDKAARDVQA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L  D                V     +      +             +I   
Sbjct: 111 AINASLADLPTDLPSLPNFRKANTAGMPVFI-IALTSKTMSSSAIYDIADTVVAQRIAQV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   +   S      +  + +P  L      T  +    V  N      MF      ++ 
Sbjct: 170 QGVGEVTVSGADQPAVRVQMNPVLLANAGIATDDVRTAIVNANAFGPIGMFNGHRQGETL 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G    +    E+  I +                                  N+       
Sbjct: 230 GLNPQMRTAAELKNIVIKS--------------------SNGNFIRLSDVANVIDATRSS 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           + ++  +   T++    L   L+                G    
Sbjct: 270 RSIAWFNKQPAVLLQITKQSDANVIETVDRIKALLPQLKQWIPAGVEISTLTDRTGTIRA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    + T    A LV+ V+F+ +      + A  S+ L +  T A +   G ++   S+
Sbjct: 330 SVDDMQWTLGATALLVMAVVFVFLRRIVPTIAAGISVPLALAGTCAGMWAAGFSIDNLSL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + + IG  VD  I++ E +     +  S   +   G  +   T+   +++ + A   L
Sbjct: 390 MALAISIGFVVDDAIVMIENMYRNLEQGMSPPRAALEGAKQIGFTVLSISLSLVAAFTPL 449

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G  +R F++T+  +I +S   +++I   +    I++   K            +
Sbjct: 450 IFMDGIVGRLLREFSLTLVFAIAVSTVVSLTITPMICAQYIKHAHSKKETRFDRIVEGFL 509

Query: 535 PDCIAIQFMRARFWGVGISILFSICS 560
              +       +       +   +  
Sbjct: 510 SRILVFYERTLKIVLRVPVLTIVVFF 535



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 72/213 (33%), Gaps = 10/213 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI---RKGI 670
            K   V LQ            ++ +K  + ++                +  +        
Sbjct: 276 NKQPAVLLQITKQSDANVIETVDRIKALLPQLKQWIPAGVEISTLTDRTGTIRASVDDMQ 335

Query: 671 VGVII-SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +   + + M +      +    + A  ++ L +  T       G   +  ++ A+   
Sbjct: 336 WTLGATALLVMAVVFVFLRRIVPTIAAGISVPLALAGTCAGMWAAGFSIDNLSLMALAIS 395

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG+ V+D +V+ + M +N+      +S      +   +     +  S++   +  P+   
Sbjct: 396 IGFVVDDAIVMIENMYRNL---EQGMSPPRAALEGAKQIGFTVLSISLSLVAAFTPLIFM 452

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            G V   +  F++ + F I V+   S+ I   I
Sbjct: 453 DGIVGRLLREFSLTLVFAIAVSTVVSLTITPMI 485



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 66/159 (41%), Gaps = 6/159 (3%)

Query: 673  VIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ + +A+ I + + ++     L  I+TL       L    + G+   + A   ++ LIG
Sbjct: 862  ILGALVAVYIVLGVLYESLAHPLTIISTLPPAGLGALLALLVTGLPLTVIAFVGIILLIG 921

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                + +++ D   +        ++  + I  +        + T+MAA ++ +P+ V   
Sbjct: 922  IVKKNGIMIVDFALE--GERQHGMNSEEAIFAASITRFRPILMTTMAALLAAVPLVVATG 979

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             G  +     + +  G++V+   +++    I L I   R
Sbjct: 980  PGTELRRPLGVTIIGGLIVSQILTLYTTPVIYLLIDRAR 1018


>gi|87121823|ref|ZP_01077709.1| AcrB/AcrD/AcrF family protein [Marinomonas sp. MED121]
 gi|86162852|gb|EAQ64131.1| AcrB/AcrD/AcrF family protein [Marinomonas sp. MED121]
          Length = 1054

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/507 (11%), Positives = 139/507 (27%), Gaps = 42/507 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  +  +++ + ++  +G+     +       +  P                   + L+ 
Sbjct: 9   LSRSRTVLMFFVLLLVMGI-----SSYINIAKEENPDITIPTIY---------VSISLDG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              +  +  L    ++    ++       +  +    ITL F  +   +     V   + 
Sbjct: 55  ISPEDSDSLLVHPMEKELKSIEGLDKISSTASEGHASITLEFDSNTDIDQALVDVKDKVD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  D  +  +         ++    + D   +     +        D I   +  
Sbjct: 115 TAKADLPDDADEPTVNEINLSTFPVLQVTLHGDVEFATLSRIAN----NLQDDIEAVQGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           ++   S            P  L         +       N             R S    
Sbjct: 171 LEAEISGDREDLAEIIISPDALESYNLDLTDVVNTFNNSNQLVAAGTLDTGSGRFSLKVP 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L++ + +I                     ++     G +                    
Sbjct: 231 GLLKTEEDI--------------------FNLPMKVEGDKAVLLKDIATGHMTFKDATSY 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L          S +   +    I     +  +            + +    + L S +
Sbjct: 271 ARLDGKSSITLGVSKRVGGNTINMITAVKEVIEVESTKWPEGVKYSLSQDESVSILQSLN 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      LV++V+   +       +   +I    ++ + +L + G T+ +  + G+
Sbjct: 331 DLFNNVIFATVLVMVVIVAFLGLRTS-FLVGIAIPGAFLMGILILHMQGFTMNMVVLFGL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +L +G+ VD  I+V E    +  +  S   +      R    I  S  T L   + L ++
Sbjct: 390 ILSVGMLVDGAIVVTEYADRKLAEGASKQQAYSEAAQRMAWPITASTATTLAVFMPLLYW 449

Query: 481 G---GGAVRGFAITMGLSILISMFTAI 504
               G  +R   IT+  ++  S+  A+
Sbjct: 450 PDIVGEFMRYMPITVIATLTSSLVMAL 476



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/237 (13%), Positives = 84/237 (35%), Gaps = 26/237 (10%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E   +V +     + +   +V++ +  ++      + +        +  ++     +   
Sbjct: 803  EGKKVVNISADVKEGLVVDQVIKAIAAEMEASNMPAEVDYQFRGNTEDQQKSQAFLMNAF 862

Query: 674  IISAIAMLIYIWIRFKWYFALGAITT--LILDITKTLGFFAL---FGIEFNLTAVAAVLT 728
             I+   M I +  +F  +F    I +  +   +   +G  A    FGI  +   V A+  
Sbjct: 863  GIAFFMMAIILVTQFNNFFQCLLILSAVIFSTMGVLVGLMAKGEPFGIVMSGVGVIALA- 921

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
              G  VN+ +V+ D       L    +   +   ++  + L   + T++   + ++PM  
Sbjct: 922  --GIVVNNNIVLIDTFN---SLRAQGMLVVEAAVRTGAQRLRPVLLTTVTTILGLIPMVF 976

Query: 789  -----WGGSVIG----------SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                      I             +  +A G++ A   ++F+   +L+  Y  + + 
Sbjct: 977  QLNVDLMNQSISIGAPSSQMWTQLSTAIAGGLLFATPLTLFLTPCLLVLGYRRKERK 1033



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 76/237 (32%), Gaps = 4/237 (1%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V  ++ V L  + +   + +      +        L   +   G+++     ++ V 
Sbjct: 243 PMKVEGDKAVLLKDIATGHMTFKDATSYARLDGKSSITLGVSKRVGGNTINMITAVKEVI 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           +  +   P     +          + +      VI + + +++ I        +      
Sbjct: 303 EVESTKWPEGVKYSLSQDESVSILQSLNDLFNNVIFATVLVMVVIVAFLGLRTSFLVGIA 362

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +       +    + G   N+  +  ++  +G  V+  +VV +      +      S + 
Sbjct: 363 IPGAFLMGILILHMQGFTMNMVVLFGLILSVGMLVDGAIVVTE---YADRKLAEGASKQQ 419

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++          ++       +P+  W   ++G F   M   ++   +SS+ +A
Sbjct: 420 AYSEAAQRMAWPITASTATTLAVFMPLLYWP-DIVGEFMRYMPITVIATLTSSLVMA 475


>gi|288929947|ref|ZP_06423789.1| HAE1 efflux family protein [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288328766|gb|EFC67355.1| HAE1 efflux family protein [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 1068

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/668 (11%), Positives = 188/668 (28%), Gaps = 43/668 (6%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
              + ++P   P   IS+    +G        D    +N  +    + + + ++      
Sbjct: 9   SLPIAQYPDIAPPT-ISVMAHYQG-------ADAQTVLNSVVVPLEESI-NGVENMTYME 59

Query: 89  FSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
            +        IT+ F      +  A  V   +    + L  +  +  + T+  +  ++V+
Sbjct: 60  STATNDGTAMITIYFKQGVNADMAAVNVQNRVSQAQALLPAEVTQVGVTTSKRQTSNVVM 119

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
                          +          I   +              +     P +++Q   
Sbjct: 120 YTITSSDGRYDEKFITNFNEINIQPAIKRVQGVGNVQSFSSGTYSMRIWLQPDKMKQYGL 179

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
             + ++      N       FG +    +   +Y++  K  +                 +
Sbjct: 180 MPSDITAALAEQNIQAAPGSFGEQ---SNVAFEYVMRYKGRL-------------KTPEE 223

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
               I  +    +  +      +                     +    A  +     + 
Sbjct: 224 YGNIIISNNTQGQTLYLKDVAKVELGALGYSVTMKNNGYPSVMGMVQQIAGSNATQIAQD 283

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
              +         P     +          +      T  I   LV  V+++ +   +  
Sbjct: 284 VKKVLEEQSKTFPPGLEYKINYDVTEFLFAAIEEVVMTLIITFVLVFFVVYVFLQDFRST 343

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ- 446
           L+   ++ +++I T   L + G ++ L +++ ++L I + VD  I+V E +  +      
Sbjct: 344 LIPLIAVPVSLIGTFLFLWMFGFSINLLTLSALLLAIAIVVDDAIVVVEAVHAKLDMGYK 403

Query: 447 -SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG--GAVRGFAITMGLSILISMFTA 503
            S   ++D     + + I  + + A +   V F  G      R F +TM +SI+IS   A
Sbjct: 404 SSKVAAIDAMNEISGAIISITLVMACVFIPVSFISGTSGTFYREFGVTMAVSIIISAINA 463

Query: 504 ISIVRAMMIFIIRYK----KMKSIDINPLSRFFLIPDCIAI---------QFMRARFWGV 550
           +++  A+    ++        +                  +           +R R    
Sbjct: 464 LTLSPALCAIFLKPHAEGEHGRKTSFVDRFHAGFNVAFNKVLGKYRKGVENIIRHRIVTG 523

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              ++  +  +  + T       +   G     ++  P         + +     ++   
Sbjct: 524 VAVLVGIVVLVFTMSTTKTGLVPNEDTGTLFVTISLPPATSQERTQEVVNQVDEMLANNP 583

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
               +  +    +  G    Q   +  +K             +    G  I R  I    
Sbjct: 584 MIQSREQIAGYNFIAGQGSDQATFVLKLKPFEERTGGFFYKLSGLWQGDGIMRFFIDVRS 643

Query: 671 VGVIISAI 678
             +I+  I
Sbjct: 644 SNMILGTI 651



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 46/395 (11%), Positives = 113/395 (28%), Gaps = 18/395 (4%)

Query: 450  CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
             S +M     Y  I       +IA       G G       T+      S+     + + 
Sbjct: 642  RSSNMILGTIYKQISSIKGAQIIAFGAPMIPGYGLANSVTFTVQDKTGGSLDHFFKVTQD 701

Query: 510  MMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
             +  +    ++ +        +      + +   +       + +         ++    
Sbjct: 702  YLKALNERPEVMNAMTTYNPNYPQYMVDVDVAKCKQSGISPRVVLSTLQGYYGGMYASNF 761

Query: 570  N-----YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
            N     Y +  +G +   +  +   ++ V  +          +     G  N      + 
Sbjct: 762  NSFGKLYRVMIQGDVASRMKPSDITNIYVRTAQGMVPVSEYCTLTRVYGPSNVRRFNLFT 821

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----RKGIVGVIISAIAM 680
              +            + I  I  ++        G   S        +     +I +   +
Sbjct: 822  SINVNVTPADGYSSGEVIKAIEEVAAQNLPTGYGYDFSGLTRSEHEQSNTTALIFALCLV 881

Query: 681  LIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             +Y+ +      +   L  I +L   +     F  LFG + ++    A++ LIG    + 
Sbjct: 882  FVYLILSAQYESYLLPLSVILSLPFGLAGAFIFTQLFGHQNDIYMQIALIMLIGLLAKNA 941

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS- 796
            +++ +   +      T ++ +          L   + T +A  I +LPM    G      
Sbjct: 942  ILIVEFALE---RRRTGMAIKYSAILGAASRLRPILMTGLAMVIGLLPMMFASGVGKNGN 998

Query: 797  --FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                     G+++     IF+   + +     + K
Sbjct: 999  QTLGAAAVGGMLIGMMLQIFVVPALFVIFQYLQEK 1033


>gi|220924313|ref|YP_002499615.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
 gi|219948920|gb|ACL59312.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
          Length = 1038

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 63/517 (12%), Positives = 140/517 (27%), Gaps = 38/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   +   GL            +   P+                    L   
Sbjct: 9   RRPVATILLSLALTLSGLFA-----YRLLPVAALPTVDFPTI---------SVTAQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +     +  S +        +  Q    IT+ F  SR  +  A  V   +  
Sbjct: 55  SPESMAASVATPLIKEFSTIPAIATISATNYQGFTSITIEFELSRNIDQAAADVQAAITR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L V+              + V+                          +       
Sbjct: 115 TLRRLPVELTIPPSFRKLNPADAPVILLAVSSDTTP-LPTLDAFAQTVISPSLSTITGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  + DP+ L        ++       N S    +          G   
Sbjct: 174 QVLVYGSQKFAVRIQFDPNVLAARGIGVDEVQAAISNANTSTPVGVVE------GRGQNL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   ++                     DI       R         +   +       
Sbjct: 228 TIQTNTQL--------------MNADAFRDIIVAVRNGRPVRLGEVARVIDSVENARIAS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++    +    +          V      +   +   
Sbjct: 274 WKDGRRALVLAVQRQPDANTVEVVDRVRAMLPKFQEQLGGGGTISVVNDRSVSIREAVHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +  GLV++V+++ +      L+   ++ +++I T   + LLG ++   S+ G+ 
Sbjct: 334 VQFTLLLTIGLVVVVIYLFLGRLAATLIPSIAVPISIIATFGAMYLLGFSIDNISLLGLT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +    F +   G      TI    I+ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGMKPFEAALKGAGEIGFTILSITISLIAVFIPVLLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
              G     FAI + ++I+ S   ++++   +   + 
Sbjct: 454 GVVGRIFNEFAIVVTIAIVASAVISLTLTPMLAARLP 490



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 61/154 (39%), Gaps = 7/154 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I  + ++IY+    +    L     + + I  T G   L G   +  ++  +   +G 
Sbjct: 340 LTIGLVVVVIYL-FLGRLAATLIPSIAVPISIIATFGAMYLLGFSIDNISLLGLTLAVGL 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +   ++     +   +   K   E     +  +++     +P+ + GG 
Sbjct: 399 VVDDAIVMLENI---VRHVEEGMKPFEAALKGAGEIGFTILSITISLIAVFIPVLLMGGV 455

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           V      FAI +   IV +A  S+ +   +   +
Sbjct: 456 VGRIFNEFAIVVTIAIVASAVISLTLTPMLAARL 489



 Score = 54.3 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 85/211 (40%), Gaps = 6/211 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + +     VA  + ++ V      +    T+  T     ++ ++ +    + +  + +
Sbjct: 805  VTISFDVPPGVALGQAVDRVAAIKQSLGLPGTLTTTFAGTAQVFQDALANQGLLLAAAVL 864

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
             + + + I ++ +   L  +T L       LG   L G++ ++ A+  VL LIG    + 
Sbjct: 865  TIYLVLGILYESFIHPLTILTGLPAAAVGALGALQLLGMDLSVIAIIGVLMLIGIVKKNA 924

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D     +       +    I ++        + T+ AA +  LP+A+       + 
Sbjct: 925  IMMIDVAL--VLQREQGWTPATAIREACLLRFRPIMMTTAAAVMGTLPIAIGHGASAELR 982

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + +  G++V+   ++FI   + L++  
Sbjct: 983  QPLGVAVVGGLLVSQLLTLFITPVLYLYMDR 1013


>gi|254227140|ref|ZP_04920680.1| Sua5/YciO/YrdC/YwlC [Vibrio cholerae V51]
 gi|125620337|gb|EAZ48731.1| Sua5/YciO/YrdC/YwlC [Vibrio cholerae V51]
          Length = 440

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 56/468 (11%), Positives = 134/468 (28%), Gaps = 36/468 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL         +  +  +P                         
Sbjct: 9   KRPVLAVSISFLIVLLGLQAIF-----KMQVREYPEMTNTVIT---------VSTGYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    ++  +               ++ IT++   +         V      
Sbjct: 55  SADLIQGFITQPLEQAVAQADNIDFMTSQSVLGRSTITVTMKLNTDPNAALSDVLAKTNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L  + +   +  +T    +++      +++ S   + +  + R    Q+       
Sbjct: 115 VRSQLPKEAEDPTVTMSTGSTTAVLYIGFTSNELASS--QITDYLERVVNPQLYAVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +   L    DP+++  L  + A +       N           F+  +     
Sbjct: 173 SIDLYGGMKYALRVWLDPAKMAALNLSAADVMSILNANNYQSATGQAIGEFVLYNGSADT 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++                      +                 +    +      
Sbjct: 233 QVSTVEDLE--------------------SLVVKAEKGTVTRLGDIAKVTLAKSHDTYRA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A  +     +     +    +   L+          V   +  A   S   
Sbjct: 273 SANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEMNVLYDSTVAINESIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T    A +VL+V+ + +   +  L+   +I L++I    ++ ++G +  L ++  +V
Sbjct: 333 VIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVMQMMGFSWNLMTLLAMV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           L IGL VD  I+V E +    ++ +S F +  +G       +    +T
Sbjct: 393 LAIGLVVDDAIVVLENVDRHIKEGESPFRAAIIGTREIAIPVIAMTLT 440



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 60/187 (32%), Gaps = 4/187 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +     +             E            + +   + +  +  ++ + +P +   
Sbjct: 257 DIAKVTLAKSHDTYRASANGREAVVAAINAAPSANPINIAKDVLEMLPELQKNMPSNIEM 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           N          E I + I  ++ +A+ +L+ I +        L  I T+ L +       
Sbjct: 317 NVLYDSTVAINESIHEVIKTIVEAALIVLVVITLFLGSLRAVLIPIVTIPLSLIGVAMVM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G  +NL  + A++  IG  V+D +VV + +    +      S          E    
Sbjct: 377 QMMGFSWNLMTLLAMVLAIGLVVDDAIVVLENV---DRHIKEGESPFRAAIIGTREIAIP 433

Query: 772 SVYTSMA 778
            +  ++ 
Sbjct: 434 VIAMTLT 440


>gi|311106255|ref|YP_003979108.1| AcrB/AcrD/AcrF family protein 4 [Achromobacter xylosoxidans A8]
 gi|310760944|gb|ADP16393.1| AcrB/AcrD/AcrF family protein 4 [Achromobacter xylosoxidans A8]
          Length = 1028

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 61/531 (11%), Positives = 137/531 (25%), Gaps = 49/531 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R          +I  +GL   L        L ++P                   + +  +
Sbjct: 9   RRPVLTTAFALLIALVGLRALL-----DLPLRQYPRIESAV-------------VTVTTE 50

Query: 62  EDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +         +  +  +       S  Q ++ I      +   +    +V  
Sbjct: 51  YPGASADLMQGFVTATLAQAVATTQGVEYLTSSSEQGRSTINAYLRLNANSDTALTEVLT 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V   L       ++V  +   I +V +              +  ++R     +   
Sbjct: 111 KVNEVRYLLPEGAYDPVVVRQSPGAIGVVYAGFTAPAGQP-LTGITDYLMRVAKPMLSTV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +            + +    DP R+     T A +       N            +  + 
Sbjct: 170 DGVAAVNVLGGQALSMRIWLDPLRMGAHGITAADVESAIRDNNYQAAPGQLRDALVVTNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                ++                               + G           +       
Sbjct: 230 RADTSLDSA---------------------QGFRELVVKRGPSLVRMEDIATVEIGAQSR 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +                +          + A L           +          
Sbjct: 269 NQVAGMNGEPAAYLEVMATPGGNPLDISREVRRILAGL--DLPDGAKMAIPYDVTVFIDA 326

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +     G   I +  V++V+F+ +   +   V   SI L+++   A +  LG +L L ++
Sbjct: 327 AIGNVLGKFGIASLEVVLVIFIFLGSLRAVAVPVLSIPLSLLGAAAAMLALGFSLNLLTL 386

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL IGL VD  I+V E +     + +S   +   G       +       +     L
Sbjct: 387 LAMVLAIGLVVDDAIVVVENVHRRMEEGESPLDAALNGAREIVGPVLTMAAVLVAVYAPL 446

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
              G   G     FA T+  ++++S   A+++   +   ++R +       
Sbjct: 447 GLIGGLTGALFSEFAFTLAAAVMVSAMVALTVSPMVASRLMRQQAPSRYAR 497



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 60/496 (12%), Positives = 135/496 (27%), Gaps = 24/496 (4%)

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                            I    +  +L + +        A  ++        A L     
Sbjct: 4   TDFFIRRPVLTTAFALLIALVGLRALLDLPLRQYPRIESAVVTVTTEYPGASADLMQGFV 63

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------A 459
           T TL        G+     S+      I    R N +   +L    ++           A
Sbjct: 64  TATLAQAVATTQGVEYLTSSSEQGRSTINAYLRLNANSDTALTEVLTKVNEVRYLLPEGA 123

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           Y  +        I  V   F          IT  L  +     +     A +  +     
Sbjct: 124 YDPVVVRQSPGAIGVVYAGFTAPAGQPLTGITDYLMRVAKPMLSTVDGVAAVNVLGGQAL 183

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
              I ++PL           ++                   +        +         
Sbjct: 184 SMRIWLDPLRMGAHGITAADVESAIRDNNYQAAPGQLRDALVVTNVRADTSLDSAQGFRE 243

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V +  + +     Q  +           +L  +    G+ +  +R +  + 
Sbjct: 244 LVVKRGPSLVRMEDIATVEIGAQSRNQVAGMNGEPAAYLEVMATPGGNPLDISREVRRIL 303

Query: 640 KKITEIVPLSTIQNTEIV---GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
             +            ++       I   L + GI  + +  + + I++            
Sbjct: 304 AGLDLPDGAKMAIPYDVTVFIDAAIGNVLGKFGIASLEVVLV-IFIFLG---SLRAVAVP 359

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + ++ L +          G   NL  + A++  IG  V+D +VV + +    +      S
Sbjct: 360 VLSIPLSLLGAAAAMLALGFSLNLLTLLAMVLAIGLVVDDAIVVVENVH---RRMEEGES 416

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
             D       E +G  +  +        P+ + G   G++   FA  +A  ++V+A  ++
Sbjct: 417 PLDAALNGAREIVGPVLTMAAVLVAVYAPLGLIGGLTGALFSEFAFTLAAAVMVSAMVAL 476

Query: 814 FIAAPILLFIYDWRAK 829
            ++  +   +   +A 
Sbjct: 477 TVSPMVASRLMRQQAP 492



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 61/190 (32%), Gaps = 8/190 (4%)

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV--IISAIAMLIYIWIRFKW-YFALGAIT 698
            +                 +  + L  +G   +    +   + + +  +F+     L  +T
Sbjct: 816  LQAEAASLPAGFQTSFLGESRQYLQEQGGFALTFAFALAFIFLVLAAQFESARDPLLILT 875

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            T+ L     L          N+     ++TLIG      +++ +    N++     +   
Sbjct: 876  TVPLAACGALAAMFFGYATLNIYTQIGLVTLIGLITKHGILIVE--FANVEQRLRGLDRV 933

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
              +  +    +   + T+ A    ++P+      G     + A  +  G++V    ++F+
Sbjct: 934  QAVRAAAATRIRPILMTTAAMVGGLMPLLFASGAGAGSQRAIATVLVAGLLVGTLFTLFV 993

Query: 816  AAPILLFIYD 825
               +      
Sbjct: 994  LPAVYARFGR 1003


>gi|24375501|ref|NP_719544.1| AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
 gi|24350364|gb|AAN56988.1|AE015832_4 AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
          Length = 1023

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/625 (12%), Positives = 176/625 (28%), Gaps = 45/625 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+  +  +L  M   +GL+        +  +  FP     +            +  +   
Sbjct: 9   RHPIFASVLSIMAVLLGLIA-----FQKLDIQYFPEHTTHSA---------SVNASIAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR-FKE--NIADKVTLF 118
             DF++  +        S + K         + +  +T+ F D     E  N+ +K+   
Sbjct: 55  SADFMSSNVADKLIAAASGIDKVDTMSTDCSEGRCSLTIKFNDDTSDIEYTNLMNKLRSS 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++G+N        K  +   T    S       ++            I +Q + Q+   +
Sbjct: 115 IEGINDFPQSMIDKPTVTDDTSATDSASNIITFVNSGGMEKQAMYDYISQQLVPQLKQVQ 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +++ L    A +       N S        +    S 
Sbjct: 175 GVGAVWGPYGGSQKAVRVWLNPEQMKALNIKAADVVGTLGSYNASFTSGAIKGKSRDFSI 234

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                VE   ++  + +                       G           +    ++ 
Sbjct: 235 NPLNQVETLEDVKDLVIKV-------------------SEGKIIRIADVAQVVMGEESLS 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                ++            +  +            A ++          +          
Sbjct: 276 PSMLSISRHSAMSLQILPLSNANPVKVASNIKAEIARMQKHLPQGLEMHLAYNQADFIEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +             LV +++ + +   +   +   +I + V+   A++S LG ++ + +I
Sbjct: 336 AIHEGFAALIEAVILVSLIVVLFLGSLRAASIPIITIPVCVVGVFAVMSALGFSINVLTI 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E         ++ F +   G       I    +T     + +
Sbjct: 396 LAIILAIGLVVDDAIVVVENCYRHIENGETPFNAAIKGCQEIIFPIIAMTLTLAAVYLPI 455

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
               G      R F+ T+  +++IS   A+++   M  ++        +    +++    
Sbjct: 456 GLMSGLTADLFRQFSFTLAAAVMISGVVALTLSPMMSAYLINTTEQHPRWFSRVEVQLQQ 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L  + +   F+R R       +L  +  I       +    +  G I +       V
Sbjct: 516 LNHLYINELNKWFVRKRLMFGVAVVLVGLAGIAYWQLPKILLPAEDSGFIDVTANGPTGV 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614
                  +   L             
Sbjct: 576 GRQYHLDHNRELNSVIDGHPAVGAN 600



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 79/217 (36%), Gaps = 7/217 (3%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            L     + V     ++    ++ + +P     +            I +G   +I + I 
Sbjct: 291 ILPLSNANPVKVASNIKAEIARMQKHLPQGLEMHLAYNQADFIEAAIHEGFAALIEAVIL 350

Query: 680 M-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           + LI +        A   I T+ + +       +  G   N+  + A++  IG  V+D +
Sbjct: 351 VSLIVVLFLGSLRAASIPIITIPVCVVGVFAVMSALGFSINVLTILAIILAIGLVVDDAI 410

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIG 795
           VV +      +      +  +   K   E +   +  ++      LP+ +  G    +  
Sbjct: 411 VVVENC---YRHIENGETPFNAAIKGCQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFR 467

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            F+  +A  ++++   ++ ++  +  ++ +   ++ R
Sbjct: 468 QFSFTLAAAVMISGVVALTLSPMMSAYLINTTEQHPR 504



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 106/289 (36%), Gaps = 10/289 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       FT+ +   ++        VL    V     ++   S  +     
Sbjct: 730  TFLGSVKAADLHATDGFTYPIQVQVNLDKLSDFKVLNKLYVTSESGQALPLSQFVSIKQT 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  K F+     +    +      + +K  + E +P             + +EL+  
Sbjct: 790  TAESNIKTFMGLDSAELTADLMPGYSTDEIKAYLDEQLPSLLNDAQGFKYNGVVKELMDS 849

Query: 669  --GIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              G   + +++ + + + +  +F+ +   L  + T+ L I   L   A+FG   N+ +  
Sbjct: 850  QAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCIVGALLTLAVFGQSINIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +      K     +S  +    S    L   + TS+   +S +
Sbjct: 910  GLLTLVGLVTKHGILLVEFAN---KQQAQGMSAIEAALSSAKWRLRPILMTSLTMILSAI 966

Query: 785  PMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+A+  G     + +  + +  G++     S+F+     + + + +A++
Sbjct: 967  PLALATGPGSLGLANIGLVLVGGLLAGTFFSLFVVPVAYVAMSELKARD 1015


>gi|52841263|ref|YP_095062.1| chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52628374|gb|AAU27115.1| chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 1071

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/535 (14%), Positives = 157/535 (29%), Gaps = 54/535 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N P ++ L  ++C +G        L Q  +D FP   P               +V++ 
Sbjct: 10  LHNRPLILALTIILCLLGGYT-----LKQMPVDVFPEFAPP-------------QVVVQT 51

Query: 61  DEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    V   +    +   +                + IT+ F D          V 
Sbjct: 52  QAPGMATQDVETLITYPLESAINGTPGVVSVRSKTSVGLSTITVVFDDQTDIYRNRQLVN 111

Query: 117 LFLQGVNSKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +Q V ++L    +  + L  T+     +  +  +  +        S   IR RI  +G
Sbjct: 112 ERIQQVVNRLPPGVESPIMLPVTSAVGWLVKYALVSRTESPETLRTISDWTIRPRILALG 171

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                   +     + Q      P R+     +   +       N +  G          
Sbjct: 172 ---GVASVVSLGGEVKQYQVRLIPERMLAYRISVEDVRQALTSANQNVPGAFVHQA---- 224

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                          G     +T             +     G         +       
Sbjct: 225 ---------------GTEFVVSTLGRIKTLKDIKKTLIVVRNGVPITMNNVANVAFGGEI 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              DG   T   +   I       +   T +    LA + ++    + L     R     
Sbjct: 270 KRGDGAYNTQNAVIGTISKAYGADTVTTTAKVEKALAEIKKSLPHDVTLVTNVFRQASFI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +           A +V+ VLF+ ++  +   +   S+ ++ ++ + +L   G  +   
Sbjct: 330 ESAIHNLTRALLEGAVIVIAVLFVFLMNWRASFITFLSMPVSFVVGILVLHYFGIGINSM 389

Query: 416 SIAGIVLGIGLAVDSNILVNER------IREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
           ++ G+ + IG  VD  I+  E       I  +          +        S++  + I 
Sbjct: 390 TLGGMAIAIGEVVDDGIITVENVVHRLRINRQEAHPLPTIQVVFDAVLEIRSSVVYATII 449

Query: 470 ALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             +  + +FF  G         AI    S+L S+  +I++V A+  +++   + K
Sbjct: 450 ISLVFLPIFFLSGIAEHIFSPLAIAYIASVLGSLVVSITMVPALCYWLLVRGQEK 504



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/222 (13%), Positives = 70/222 (31%), Gaps = 9/222 (4%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-IS 676
            +   Y         +V + + +    +    T+              I      ++  +
Sbjct: 285 TISKAYGADTVTTTAKVEKALAEIKKSLPHDVTLVTNVFRQASFIESAIHNLTRALLEGA 344

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            I + +       W  +     ++ +     +     FGI  N   +  +   IG  V+D
Sbjct: 345 VIVIAVLFVFLMNWRASFITFLSMPVSFVVGILVLHYFGIGINSMTLGGMAIAIGEVVDD 404

Query: 737 KVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++    V  R+R N +     +    ++  ++ E     VY ++   +  LP+    G 
Sbjct: 405 GIITVENVVHRLRIN-RQEAHPLPTIQVVFDAVLEIRSSVVYATIIISLVFLPIFFLSGI 463

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               F   AI     ++ +   SI +   +  ++     +  
Sbjct: 464 AEHIFSPLAIAYIASVLGSLVVSITMVPALCYWLLVRGQEKQ 505



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 75/224 (33%), Gaps = 11/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V+       +V    +  ++     E+     +     +      E  ++    ++
Sbjct: 839  NRENVQRLLVVSFNVQGRDLGSVIAGVQQEVQEKIKLPTGYFIQYGGQFESQQQASRVIL 898

Query: 675  ISAIAMLIYIWIRFKWYFAL---GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTL 729
            +    ++  + I     F       +    L +    G  +LF    E ++ A+   +TL
Sbjct: 899  VFGGLVIFVMLILLHKAFGTFREALLVMFNLPLALIGGVISLFVVSGEMSVAAMIGFITL 958

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
             G +  + +++        +L     +   ++     + L   + T+  A + ++P+   
Sbjct: 959  FGIAARNGIILVSHYN---QLRLQGKTREQVVIDGTMDRLVPVLMTAATAALGLIPLLWG 1015

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               G  +    A  +  G+  +   ++F+   +   I  WR + 
Sbjct: 1016 SPAGKELERPLAQVLLGGLFTSTVLNMFVVPTVYNAIEVWREQR 1059


>gi|295399334|ref|ZP_06809316.1| acriflavin resistance protein [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|294978800|gb|EFG54396.1| acriflavin resistance protein [Geobacillus thermoglucosidasius
           C56-YS93]
          Length = 1073

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 82/725 (11%), Positives = 193/725 (26%), Gaps = 77/725 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   GL   +   L        P                        
Sbjct: 10  LKNKFAVWLLTIIVMAAGLYSGMTMKLETIPNINTPVISVVTA--------------YPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   + +  ++    L        +  Q  + + +++   +  +    ++   L 
Sbjct: 56  ATPEEVANKVTIPIEKAVKNLNGVDTVTSTSFQNASSVQITYDYEKDMDEAKKELEEALT 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +      K  +   +   I ++    +I    +   + +  +  + +  +      
Sbjct: 116 SI--QFPEGVDKPKISKISFNSIPVM--ALSISDKKASLADLTKMVEDEILPSLERINGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++    D  +L QL      +       + S    ++       S    
Sbjct: 172 SSVQISGQQIEEVQIALDDKKLAQLGLNKETVQNVIKGSDVSFPLGLYTFNDKEQSVVVD 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR------FFEVTRDNIGKPL 294
             +    E+  + +        P           D  G +              N G P 
Sbjct: 232 GNITTLEELKNLEIPVIPQASKPNNGMNANVGGTDLQGGQPAPGTSHSAITPNHNAGNPT 291

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG------------------------- 329
               +     +            +I+    ++ A                          
Sbjct: 292 IARNNQANGLSQQAQGLPTVKLGEIADIQVVKEAESISRTNGKEAIGLQIVKAADANTVT 351

Query: 330 -----ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
                       A  +     I           S           A    +++ + +   
Sbjct: 352 VVNEIKKELDKFADKIDGLQIITSFDMATPIEESIKTMVDKALFGALFAALIILLFLRNI 411

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR- 443
           +  L+A  SI L+V++ L +L  L  TL + ++  + + IG  +D +I+V E I      
Sbjct: 412 RSTLIAVISIPLSVLIALLVLKQLDITLNMMTLGAMTVAIGRVIDDSIVVIENIYRRLHL 471

Query: 444 --KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILI 498
             +       +       +  I  S I  ++  + L       G     FA+T+  ++L 
Sbjct: 472 KEEKLKGKQLIREATKEMFIPIMSSTIVTIVVFLPLGLVKGMVGELFLPFALTIVFALLA 531

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           S+  AI++V  M   + + +     +        L      I         V   I   +
Sbjct: 532 SLLVAITMVPLMGHTLFQKELKGQSEHKKEKHGKLAEQYKKILNWSLNHKIVTSLIAVFL 591

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI------------ 606
               +     +          ++ V+  +P     +    E     +             
Sbjct: 592 LVASVFLVPVIGVSFLPADEEKMMVITYKPAPGETLEQVKEYTFAAEKYFLNKKNVKTVQ 651

Query: 607 -----SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                      G+ N  +       D+    +  E V K +   V     +  +  G   
Sbjct: 652 LSIGSENPMNPGDTNSAMMFVAYDDDTPNFEKEKEQVIKDLQRKVKQGEWKQQDFSGNAG 711

Query: 662 SRELI 666
           S +L+
Sbjct: 712 SNQLV 716



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/205 (17%), Positives = 81/205 (39%), Gaps = 1/205 (0%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            ++    ++V     ++    K  + +    I  +  +   I   +       +  +  A
Sbjct: 341 IVKAADANTVTVVNEIKKELDKFADKIDGLQIITSFDMATPIEESIKTMVDKALFGALFA 400

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            LI +         L A+ ++ L +   L       I  N+  + A+   IG  ++D +V
Sbjct: 401 ALIILLFLRNIRSTLIAVISIPLSVLIALLVLKQLDITLNMMTLGAMTVAIGRVIDDSIV 460

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           V + + + + L    +  + LI ++  E     + +++   +  LP+ +  G V   F +
Sbjct: 461 VIENIYRRLHLKEEKLKGKQLIREATKEMFIPIMSSTIVTIVVFLPLGLVKGMVGELF-L 519

Query: 800 PMAFGIVVAASSSIFIAAPILLFIY 824
           P A  IV A  +S+ +A  ++  + 
Sbjct: 520 PFALTIVFALLASLLVAITMVPLMG 544



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 92/243 (37%), Gaps = 8/243 (3%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             V    L  ++ G  S      +      +  Q            + K+     +P +  
Sbjct: 829  EVPIKELVEVKKGKTSDTITHRDGKIYAEVSAQVKTKDVSKVAASLQKEVDKIKLPKNVE 888

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGF 710
             +T  V   I+    + G+  +I +   +   + + F         + +L   I   L  
Sbjct: 889  ISTGGVTEDITETFTQLGL-AMIAAVAIVYFVLVVTFGGALTPFVILFSLPFTIIGALLA 947

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + ++    L 
Sbjct: 948  LFITGETISVSAMIGALMLIGIVVTNAIVLIDRV---IHKEKEGLSTREALLEAGATRLR 1004

Query: 771  RSVYTSMAAFISVLPMAVW--GGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T++A   +++P+AV   G  +I    A+ +  G+  +   ++ I   +   +  +R
Sbjct: 1005 PILMTALATVGALIPLAVGMEGSGLISKGMAVTVMGGLTSSTLLTLLIVPIVYESLSRFR 1064

Query: 828  AKN 830
             K 
Sbjct: 1065 RKK 1067


>gi|209809489|ref|YP_002265027.1| cation efflux system protein [Aliivibrio salmonicida LFI1238]
 gi|208011051|emb|CAQ81468.1| cation efflux system protein [Aliivibrio salmonicida LFI1238]
          Length = 1041

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/646 (12%), Positives = 172/646 (26%), Gaps = 39/646 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV++ +    +  + ++ N    + +D  P       I                  
Sbjct: 11  KNRFLVLVATFALVVAGIYSVKN----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGFSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  + K  L    T                     E           ++   +   +
Sbjct: 118 APRLPAEAKPTLGPDATGVGWVYSYV-LQDKTGKHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   E DP +LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVEIDPDKLRAYNLTLQQINKAIKEGNQEAGASVIEVAEAEHMVRTSGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P         
Sbjct: 237 LSSIEDIK------------------SLPLKVTDKGTPLLLGDIADINLGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I       A L+ G                   + +  
Sbjct: 279 NGEGEAVGGVIVMRFGENASNVISNVKEKLAQLQKGLPEGVEIKATYDRSKLIDHAVTNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WEKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILCAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   K    +++ +  +          +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIEKTPLTDENRWQVIGKAAEEVGPPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AI++V  +M + +R K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTFAMAASAGLAITLVPVLMGYFVRGKILPENKNPINKTLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    +R     + ++++    S   +   G  +      G  + +    P       
Sbjct: 519 RPLLNLSLRFPKTILLVAVILMGSSYYPISKMGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             L       I            V       D    T +  +++ K
Sbjct: 579 RELLQQTNKLIKTVPEVDTVWGKVGRAETATDPAPLTMIETVIQFK 624



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 73/254 (28%), Gaps = 17/254 (6%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             + + +     +    +        E        +   D       +   ++ + + + L
Sbjct: 784  ANGARIALADVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGSYVHEAQQAVHDQLDL 843

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                +    G     E  ++ +  VI   IA+++ +            I    L +    
Sbjct: 844  PAGYSLGWSGQYEYMERAKEKLTTVIPVTIAIIMLLLYLSFKRVGEVLIIMGTLPLAMVG 903

Query: 709  G--FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-----------DRMRKNMKLYTTSI 755
            G     +    F++      + L G +V   V++               ++N     T  
Sbjct: 904  GLWLMHILNFNFSIAVGVGFIALSGVAVEIGVIMLVYLNQAWDEKQATAKENSNS-VTQQ 962

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
                 I +     +   + T +   I ++P+      G  V+   A PM  G+  A   +
Sbjct: 963  DLTLAIGEGAGLRVRPVMMTVLTVIIGLIPIMYGSGTGSEVMQRIAAPMIGGMASALLLT 1022

Query: 813  IFIAAPILLFIYDW 826
            + +   +       
Sbjct: 1023 LVVIPAVFKLWKQR 1036



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/237 (16%), Positives = 86/237 (36%), Gaps = 3/237 (1%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++    ++ + +P         
Sbjct: 266 NLGPQMRRGISEFNGEGEAVGGVIVMRFGENASNVISNVKEKLAQLQKGLPEGVEIKATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
              K+    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSKLIDHAVTNLWEKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILCAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVY 774
           I  N+ ++  +   IG  V+  +V+ + + K+++    +   R  +I K+  E      +
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMIENVHKHIEKTPLTDENRWQVIGKAAEEVGPPLFF 445

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + +   +S +P+    G     F+ P+AF    A ++S  +A  ++  +  +  +  
Sbjct: 446 SLLIITLSFVPVFALEGQEGKMFS-PLAFTKTFAMAASAGLAITLVPVLMGYFVRGK 501


>gi|203284065|ref|YP_002221805.1| acriflavine resistance protein [Borrelia duttonii Ly]
 gi|201083508|gb|ACH93099.1| acriflavine resistance protein [Borrelia duttonii Ly]
          Length = 1079

 Score =  132 bits (332), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 64/503 (12%), Positives = 149/503 (29%), Gaps = 23/503 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              +        V   +    +   S +K          +  ++ITL+F      + + +
Sbjct: 50  VSTLYAGSSAKEVEEKVTRILESNLSLVKNIKTISSISSKGHSEITLNFYHGTNLDLVLN 109

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   L+     L  +     +       I ++      D      +E           +
Sbjct: 110 EVKDTLEFSKGLLPKEAGLPRISRDRLDGIPVISFFMYSD---RSVVELKRYAKELLKPR 166

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +           +      +  E   +RL     T + +       N            L
Sbjct: 167 LERLAGVGLVNITGGGDKHIVVEVSQNRLEAYGLTLSDIVPFISSQNVEFSVGEILDNDL 226

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           +             ++  + +                  S  +    +       +I   
Sbjct: 227 QYQVQISGNFNSIKDLEDVVI-------------AYKSYSLQDDSLVQVKLRDVASIKTI 273

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                       P ++      +   +              ++          V + N  
Sbjct: 274 FKEKKYVYYSDKPSVS-ISIQKQNDANFVNVSNAVNAEFEKIKLILPKDISLDVFKDNAE 332

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + S    +    A L L ++F  +   +  ++   +I L +I+T  L+     +L 
Sbjct: 333 HIRNALSSVSHSAYSGAVLALCIIFFFLRSFRATVIIGITIPLAIIITFCLMYFANISLN 392

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + S++G+ L +G+ VD +I+V E I    +K   +  +  +G       I  + +T++  
Sbjct: 393 IMSLSGLALSVGMVVDCSIVVIENIYRYRQKGAKLISAAILGTQEMMIPIMAATLTSICV 452

Query: 474 TVVLFFFG------GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
              +  F       G  +R FA T+ +S+ +S+F A+ +V  +  + I+        I  
Sbjct: 453 FAPMLIFKAELGMIGDFLRDFAFTIVISLTVSLFVAVFLVPVLSSYYIKLYTSFQKPIRN 512

Query: 528 LSRFFLIPDCIAIQFMRARFWGV 550
                +      +     RF+ +
Sbjct: 513 TLVKKVDGFLHNVYAFGERFYVI 535



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 83/223 (37%), Gaps = 8/223 (3%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             +++ ++ L      + +   V E V   +T  VP       +  G   S     +    
Sbjct: 807  EDQSLVITLTAGIAPNESLASVTEDVVDFVTNKVPQRDGILVKFEGEYDSFINSMQQFKV 866

Query: 673  VII-SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +I+ + + +   +  +F+        + T+ L +   +  + + G + ++ +   +L L+
Sbjct: 867  IILMAVLLVFGVMAAQFESLLKPFIILFTIPLTLIGVILIYFISGEKISVLSAIGMLMLV 926

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G  VN  +V+ D +     L       R+ I ++        + +S+ + I + PMA   
Sbjct: 927  GVVVNTGIVLVDYIN---LLIKRGFKLREAIVEAGRSRFRPILMSSLTSIIGLFPMAFSN 983

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                 +I   A     G++ +   ++     +      +  KN
Sbjct: 984  SNNSELIKPIAFTFIGGMIASTFLALLFIPMLFEAFSKFSIKN 1026



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 81/252 (32%), Gaps = 15/252 (5%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ +++  +  +    S +                  S A     E +K  + + + L 
Sbjct: 266 DVASIKTIFKEKKYVYYSDKPSVSISIQKQNDANFVNVSNAVNAEFEKIKLILPKDISLD 325

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             ++           +      G +++   +  ++     +   +    T+ L I  T  
Sbjct: 326 VFKDNAEHIRNALSSVSHSAYSGAVLALCIIFFFL---RSFRATVIIGITIPLAIIITFC 382

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 I  N+ +++ +   +G  V+  +VV + +    +                 E +
Sbjct: 383 LMYFANISLNIMSLSGLALSVGMVVDCSIVVIENI---YRYRQKGAKLISAAILGTQEMM 439

Query: 770 GRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSIFIAAPI---L 820
              +  ++ +     PM ++       G  +  FA  +   + V+   ++F+   +    
Sbjct: 440 IPIMAATLTSICVFAPMLIFKAELGMIGDFLRDFAFTIVISLTVSLFVAVFLVPVLSSYY 499

Query: 821 LFIYDWRAKNAR 832
           + +Y    K  R
Sbjct: 500 IKLYTSFQKPIR 511


>gi|203287604|ref|YP_002222619.1| acriflavine resistance protein [Borrelia recurrentis A1]
 gi|201084824|gb|ACH94398.1| acriflavine resistance protein [Borrelia recurrentis A1]
          Length = 1079

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/503 (12%), Positives = 148/503 (29%), Gaps = 23/503 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              +        V   +    +   S +K          +  ++ITL+F      +   +
Sbjct: 50  VSTLYAGSSAKEVEEKVARILESNLSLVKNIKTISSISSKGHSEITLNFYHGTNLDLALN 109

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   L+     L  +     +       I ++      D      +E           +
Sbjct: 110 EVKDTLEFSKGLLPKEAGLPRISRDRLDGIPVISFFMYSD---RSVVELKRYAKELLKPR 166

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +           +      +  E   +RL     T + +       N            L
Sbjct: 167 LERLAGVGLVNIAGGGDKHIVVEVSQNRLEAYGLTLSDIVPFISSQNVEFSVGEILDNDL 226

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           +             ++  + +                  S  +    +       +I   
Sbjct: 227 QYQVQISGNFNSIKDLEDVVI-------------AYKSYSLQDDSLVQIKLRDVASIKTI 273

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                       P ++      +   +              ++          V + N  
Sbjct: 274 FKEEKYVYYSDKPSVS-ISIQKQNDANFVNVSNAVNAEFEKIKLILPKDISLDVFKDNAE 332

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + S    +    A L L ++F  +   +  ++   +I L +I+T  L+     +L 
Sbjct: 333 HIKNALSSVSHSAYSGAVLALCIIFFFLRSFRATIIIGITIPLAIIITFCLMYFANISLN 392

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + S++G+ L +G+ VD +I+V E I    +K   +  +  +G       I  + +T++  
Sbjct: 393 IMSLSGLALSVGMVVDCSIVVIENIYRYRQKGAKLISAAILGTQEMMIPIMAATLTSICV 452

Query: 474 TVVLFFFG------GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
              +  F       G  +R FA T+ +S+ +S+F A+ +V  +  + I+        I  
Sbjct: 453 FAPMLIFKAELGMIGDFLRDFAFTIVISLTVSLFVAVFLVPVLSSYYIKLYTSFQKPIRN 512

Query: 528 LSRFFLIPDCIAIQFMRARFWGV 550
                +      +     RF+ V
Sbjct: 513 TLVKKVDGFLHNVYAFGERFYVV 535



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 83/223 (37%), Gaps = 8/223 (3%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             +++ ++ L      + +   V E V   +T  VP       +  G   S     +    
Sbjct: 807  EDQSLVITLTAGIAPNESLASVTEDVVDFVTNKVPQRDGILVKFEGEYDSFINSMQQFKV 866

Query: 673  VII-SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +I+ + + +   +  +F+        + T+ L +   +  + + G + ++ +   +L L+
Sbjct: 867  IILMAVLLVFGVMAAQFESLLKPFIILFTIPLTLIGVILIYFISGEKISVLSAIGMLMLV 926

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G  VN  +V+ D +     L       R+ I ++        + +S+ + I + PMA   
Sbjct: 927  GVVVNTGIVLVDYIN---LLIKRGFKLREAIVEAGRSRFRPILMSSLTSIIGLFPMAFSN 983

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                 +I   A     G++ +   ++     +      +  KN
Sbjct: 984  SNNSELIKPIAFTFIGGMIASTFLALLFIPMLFEAFSKFSIKN 1026



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 81/252 (32%), Gaps = 15/252 (5%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ +++  +  +    S +                  S A     E +K  + + + L 
Sbjct: 266 DVASIKTIFKEEKYVYYSDKPSVSISIQKQNDANFVNVSNAVNAEFEKIKLILPKDISLD 325

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             ++           +      G +++   +  ++     +   +    T+ L I  T  
Sbjct: 326 VFKDNAEHIKNALSSVSHSAYSGAVLALCIIFFFL---RSFRATIIIGITIPLAIIITFC 382

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                 I  N+ +++ +   +G  V+  +VV + +    +                 E +
Sbjct: 383 LMYFANISLNIMSLSGLALSVGMVVDCSIVVIENI---YRYRQKGAKLISAAILGTQEMM 439

Query: 770 GRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAASSSIFIAAPI---L 820
              +  ++ +     PM ++       G  +  FA  +   + V+   ++F+   +    
Sbjct: 440 IPIMAATLTSICVFAPMLIFKAELGMIGDFLRDFAFTIVISLTVSLFVAVFLVPVLSSYY 499

Query: 821 LFIYDWRAKNAR 832
           + +Y    K  R
Sbjct: 500 IKLYTSFQKPIR 511


>gi|183982134|ref|YP_001850425.1| protein-export membrane protein SecD [Mycobacterium marinum M]
 gi|183175460|gb|ACC40570.1| protein-export membrane protein SecD [Mycobacterium marinum M]
          Length = 615

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 119/606 (19%), Positives = 221/606 (36%), Gaps = 77/606 (12%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
             +   ++  IG+ + +     +                LG+DL+GG+ + L     D  
Sbjct: 12  RYLSVFLVLLIGVYLLVFLTGDKKAAP-----------KLGIDLQGGTRVTLTARTPDGS 60

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA--DSRFKENIADKVTLFLQG 121
                 L      + + +   G+    +    + + ++    D     N+     L+++ 
Sbjct: 61  APSREALAQAQQIISARVNGLGVSGSEVVVDGDNLVITVPGNDGNEARNLGQTARLYIRP 120

Query: 122 VNSKL--------------------------------NVDPKKNLLVTTTEKEISIVLSQ 149
           V + +                                  +        +         + 
Sbjct: 121 VMNSMPAQPAAQEPQQEPQQPGGTAPAPGGPAPNAGQPPESGAPASPQSGAPAAPQSGTP 180

Query: 150 ----------------------NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                                 +              +           +    ++  + 
Sbjct: 181 GRPGAQPRPYPQDPPPSPAPAPSPAPTGSPAPPATGAQQPADLPPGEEPALPDPRKDLAE 240

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI  +    Q  ++  Q++    + +        +             +D     +    
Sbjct: 241 RIAQEKKWRQSTNQYIQMVALQFEATQCGKDDILAGNDDPKLPLVTCSTDHKTAYLLAPS 300

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            ISG  +  AT+  D ++   VVD+ F    A  + + T  +IG   A  LD +V++AP 
Sbjct: 301 IISGDQIQNATSGMDQRSIGYVVDLQFKSQAANTWADYTAAHIGTQTAFTLDSQVVSAPQ 360

Query: 308 INQAIPSGKAQISGN---FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           I +AIP G+ QISG    F+  TA  LA +L+ GSLP+     E + V A LG  S+  G
Sbjct: 361 ILEAIPGGRTQISGGEPPFSASTARQLANVLKYGSLPLSFESSEAQTVSATLGLTSLRAG 420

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTLPSIAGI 420
             A   GL L++L+ ++ Y   GL+   S+  +  +  A+L LL      TL L  IAG+
Sbjct: 421 LIAGAIGLALVLLYSLLYYRVLGLLTALSLIASGAMVFAILVLLGRYINYTLDLAGIAGL 480

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++GIG   DS ++  ERI++E R+ +S   ++  G++RA  TI   N    +A  VL+F 
Sbjct: 481 IIGIGTTADSFVVFFERIKDEIREGRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFL 540

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
             G V+GFA T+GL+ ++ +     +   ++    +  ++     N L     +      
Sbjct: 541 AIGQVKGFAFTLGLTTILDIVVVFLVTWPLVYLASKSPRLAKPAYNGLGAVQQVARERRA 600

Query: 541 QFMRAR 546
              R R
Sbjct: 601 SDSRTR 606



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 24/144 (16%)

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDK--------------------VVVYDRMRKNM 748
           G      +  +   V A+L L+G  +N                      VV ++R++  +
Sbjct: 443 GLLTALSLIASGAMVFAILVLLGRYINYTLDLAGIAGLIIGIGTTADSFVVFFERIKDEI 502

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           +      SFR  + +         V  +   F++   +       +  FA  +    ++ 
Sbjct: 503 RE---GRSFRSAVPRGWARARKTIVSGNAVTFLAAAVLYFLAIGQVKGFAFTLGLTTILD 559

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
                 +  P++  +     + A+
Sbjct: 560 IVVVFLVTWPLVY-LASKSPRLAK 582


>gi|90424862|ref|YP_533232.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
 gi|90106876|gb|ABD88913.1| acriflavin resistance protein [Rhodopseudomonas palustris BisB18]
          Length = 1021

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/516 (12%), Positives = 148/516 (28%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ ++I  IGL            + ++P                         
Sbjct: 9   RRPVLSLVVSALILVIGLRAMF-----SLPILQYPQMQNGVVT---------ITTTYAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + D + GF+    + + +          S +   + IT+    +    N   +++  +  
Sbjct: 55  DSDIIAGFITSPLENVIAQANGIDTMTSSSQTGVSAITVHLRLNYDSGNALTEISTKVSS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++ +L       I  +    +   +  +  E +  + R    ++       
Sbjct: 115 VLNQLPAGTQQPILALKMGATIDAMYIAFSSTVLAEN--EVTDYVARVVQPKLQAVAGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP ++  L  T   ++      +                 G   
Sbjct: 173 VAEILGGKNFALRAWLDPDKMASLGLTATDVATALKTNDYIS------------GVGTTK 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               +V++S      +   F          +    +           N+           
Sbjct: 221 GRLVQVKLSAATNMQSVQAFRE--------LIIKTVDGAMIRLQDVANVTLGSDDYDSRT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    IE        + +         V          S   
Sbjct: 273 SFNGKSAVYIGIQVAPSANLLDVIEGVRQTLPGIISDLPSGLSGTVLYDATQFVNTSIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +    A +V +V+F  +   +   +   +I L++I + AL+ +LG ++ L ++  +V
Sbjct: 333 VVISLFEAALIVTLVVFAFLGSWRSVFIPIVAIPLSLIGSFALMLVLGFSINLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +            +           I       +   V + F G
Sbjct: 393 LAIGLVVDDAIIVVEGVNRHMELGLKPIDAAITAARELSGPIIAMTAVLIAVYVPVGFQG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G     FA T+  ++L+S   A+++      ++
Sbjct: 453 GLTGSLFTEFAFTLVAAVLVSAVVALTLSPMSCGYL 488



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 83/277 (29%), Gaps = 16/277 (5%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              +            D      +       V LS +           ++           
Sbjct: 744  YKVIPQVMQQHRLNTDQLLNYYIRAADGTSVPLSTIARIEMKTVPQSLNHFQQLNASTIS 803

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                    D  A   +  +  + +          ++  +  + +  +    +     + +
Sbjct: 804  GIAMPGVSDGDALAELRAVAARALPSGYSYDYAGSSRQLENESNGFVTTFAL-----ALL 858

Query: 679  AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG---IEFNLTAVAAVLTLIGYSV 734
             + + +   F  +   L  + ++ + +   L FF   G      N+     ++TL+G   
Sbjct: 859  IIFLVLAALFNSFRDPLVILVSVPMSLAGAL-FFIWLGVGGASINIYTQVGLVTLMGLVS 917

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGG 791
               +++ +       L     S  D I ++ +  L   + T+ A  + V P+ V    G 
Sbjct: 918  KHGILMVEVAN---TLRQEGRSKHDAIIEAASIRLRAIMMTTAAMVLGVTPLIVATGAGA 974

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +   +  + +A G+ +    ++F+     L +     
Sbjct: 975  NSRFNMGLVIATGLAIGTLFTLFVVPAFYLLLSHRDQ 1011



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 65/217 (29%), Gaps = 7/217 (3%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + L  V +        D           ++        + +     +      I   +P
Sbjct: 252 MIRLQDVANVTLGSDDYDSRTSFNGKSAVYIGIQVAPSANLLDVIEGVRQTLPGIISDLP 311

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                       +     IR+ ++ +   + I  L+       W      I  + L +  
Sbjct: 312 SGLSGTVLYDATQFVNTSIREVVISLFEAALIVTLVVFAFLGSWRSVFIPIVAIPLSLIG 371

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           +     + G   NL  + A++  IG  V+D ++V + +    +     +   D    +  
Sbjct: 372 SFALMLVLGFSINLLTLLALVLAIGLVVDDAIIVVEGVN---RHMELGLKPIDAAITAAR 428

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIP 800
           E  G  +  +       +P+   G   GS+   FA  
Sbjct: 429 ELSGPIIAMTAVLIAVYVPVGFQGGLTGSLFTEFAFT 465


>gi|330890474|gb|EGH23135.1| RND efflux transporter [Pseudomonas syringae pv. mori str. 301020]
          Length = 461

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/460 (12%), Positives = 122/460 (26%), Gaps = 38/460 (8%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS----DELRSFLK 82
            P+  +   P A                 + +        +  +        +   S + 
Sbjct: 33  FPRLPIAPLPEAEFPT-------------IQVTAQLPGASSETMASSVATPLEVQFSAIP 79

Query: 83  KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                  S       +TL F  ++  +  A +V   +     +L  D             
Sbjct: 80  GMTQMTSSSALGSTNLTLQFTLNKSIDTAAQEVQAAINTAAGRLPADMPSLPTWRKVNPA 139

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
            S VL   ++   +    E S         Q+   E   Q   + +    +  +  P +L
Sbjct: 140 DSPVLI-LSVSSSLMPGTELSDVTETILARQLSQIEGVGQVFITGQQRPAIRVQAAPEKL 198

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
             L  T A +                              +          ++  ++N  
Sbjct: 199 AALGLTLADIRLAV--------------------QQTSLNLAKGALYGKDSISTLSSNDQ 238

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +    +                 +                         +   +  
Sbjct: 239 LFKPQDYAQLIVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIV 298

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T++        L+          V          S    + T  I   LV+ V+ + + 
Sbjct: 299 DTVDRIQRELPRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLR 358

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
                L+    + +++I + A++ L G +L   ++  IV+ +G  VD  I+V E I    
Sbjct: 359 QLSATLIVSAVLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIHRHL 418

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
              Q +  +   G      T+   + + + A + L F GG
Sbjct: 419 EAGQGMREAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGG 458



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 78/215 (36%), Gaps = 7/215 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++ +      ++     +   + ++          V +             ++ +++++
Sbjct: 249 IVSYKNGAPVQLKDVARVVAGSENAYVKAWSGDQQGVNIAIFRQPGANIVDTVDRIQREL 308

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG---IVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +  +        V    +R +        + ++I+ + ++  + +  +   A   ++ 
Sbjct: 309 PRLQEMLPATVEVSVLNDRTRTIRASLHEVELTLMIAVLLVVAVMALFLRQLSATLIVSA 368

Query: 700 LI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + +  +     LFG   N   + A++  +G+ V+D +VV + +    +        R
Sbjct: 369 VLGVSLIASFAMMYLFGFSLNNLTLVAIVVAVGFVVDDAIVVVENIH---RHLEAGQGMR 425

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +   K   E     V  S +   + +P+   GG V
Sbjct: 426 EAAIKGAGEIGFTVVSISFSLVAAFIPLLFMGGVV 460


>gi|91782471|ref|YP_557677.1| cation efflux transporter [Burkholderia xenovorans LB400]
 gi|91686425|gb|ABE29625.1| cation/multidrug efflux pump, RND family [Burkholderia xenovorans
           LB400]
          Length = 1061

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 77/555 (13%), Positives = 159/555 (28%), Gaps = 44/555 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L   I  IG L A+     ++  D FP                   +V + 
Sbjct: 9   LRRPYTFVVLAIFILIIGPLSAM-----KTPTDIFPDIRIPV-----------ISVVWQY 52

Query: 61  D--EDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                D + G +    +  L + +                I + F           +VT 
Sbjct: 53  TGLPPDQMVGRITSPFERTLTTTVNDVEHTEAESVAGFGIIKIFFQPGVNISTANAQVTS 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q    +L       L++      + I+    +   +           +      +   
Sbjct: 113 VAQTQLRQLPPGTTPPLILNYNASTVPIIQLALSGKGLSEQ--RLGDLGLNAVRPVLTTV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                         Q+  + DP  L+    +   ++                        
Sbjct: 171 AGASIPYPFGGKTRQVQIDVDPVALQARGLSAQDVANALA-------------------- 210

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
           G   +     E  G +      N  P   K + D+    +     +     N+       
Sbjct: 211 GQNLITPVGTEKIGDYEYTLQLNNAPSQIKALGDLPVKAVNGTTVYIRDIANVRDGSPPQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +               +S    I       A  +A                    
Sbjct: 271 TNIVHVDGHRSVLMSVLKNGSVSTLGIISGVKQQIAAGKASWPDALQIDPIGDQSLFVRA 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +       I A L  +++ + +   +  L+   SI L ++ ++A LS LG TL + ++
Sbjct: 331 AITGVAREGVIAAVLTSLMILLFLGSWRSTLIIATSIPLAILGSIATLSALGETLNIMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I       + V  ++  G ++  +  F S +   I  V +
Sbjct: 391 GGLALAVGILVDDATVTIENINWHLEHGKEVETAILDGAAQIVTPAFVSLLCICIVFVPM 450

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           FF  G         A  +  +++ S F + ++V  M  ++++       + N        
Sbjct: 451 FFLQGVARFLFVPMAEAVIFAMISSFFLSRTLVPTMAKYLLKPHAHGEHEENRPGPLGRF 510

Query: 535 PDCIAIQFMRARFWG 549
                 +F + R   
Sbjct: 511 QRGFEARFEKIRTRY 525



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 59/158 (37%), Gaps = 4/158 (2%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           VI + +  L+ +     W   L   T++ L I  ++   +  G   N+  +  +   +G 
Sbjct: 340 VIAAVLTSLMILLFLGSWRSTLIIATSIPLAILGSIATLSALGETLNIMTLGGLALAVGI 399

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D  V  + +                I     + +  +  + +   I  +PM    G 
Sbjct: 400 LVDDATVTIENIN---WHLEHGKEVETAILDGAAQIVTPAFVSLLCICIVFVPMFFLQGV 456

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F +PMA  ++ A  SS F++  ++  +  +  K 
Sbjct: 457 ARFLF-VPMAEAVIFAMISSFFLSRTLVPTMAKYLLKP 493



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 65/171 (38%), Gaps = 7/171 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
            +         + G++ + + + + I + F  W      +T L   +   +          
Sbjct: 876  QTMNSAFTGMLFGLLGAVVLIYLLIVVNFQSWADPFVIVTALPAALAGIVWMLFATHTTL 935

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++ A+   +  +G +  + ++V    R+  +L      F+  ++          + T+++
Sbjct: 936  SVPALTGAIMCMGVATANSILVVSFCRE--RLAVHGDPFKAALEAGFTR-FRPVLMTALS 992

Query: 779  AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              I + PMA+    GG         +  G++ A ++S+F+   I   ++  
Sbjct: 993  MIIGMAPMALALGEGGEQNAPLGRAVIGGLLFATTASLFLVPVIFCIVHAR 1043


>gi|306821466|ref|ZP_07455069.1| RND superfamily resistance-nodulation-cell division antiporter
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304550481|gb|EFM38469.1| RND superfamily resistance-nodulation-cell division antiporter
           [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 1062

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/608 (11%), Positives = 173/608 (28%), Gaps = 54/608 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++   ++  +G +              FP A+                   +  
Sbjct: 9   KRPIAVIMAMFIVLLLGFVSISKMQQALMPEMDFPYALILT--------------TYKDA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   S ++       + +   + +   F          + +   +  
Sbjct: 55  GPEEVENLVSSPIESAISGVENIKNVYSTSQNGTSIVEAEFNYGTDLNQAINDMRESISK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D  +  ++  +   + I     + D       + +        +++   +   
Sbjct: 115 IKKYLPSDASEPTIMKFSLNSLPIASISLSSD--TMDIAQLNSFAKDTVKNRLERQKGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++  E D  +   L      +S   +  N ++ G                
Sbjct: 173 SANIYGGVENEIVIEVDQEKAEGLGVDMDIVSQVLMSENTNQAGGSIDY----------- 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G      ++    +    +          +        NI +    V    
Sbjct: 222 ---------GNKTITISSKLKLQNIDDIKKTPIMLKSGQVINLQDIANISEKQKEVSSIV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S  +  +    +        ++   +   KL I+   +      S S 
Sbjct: 273 RHNGKQAVVINISKSSDGNVVSAVNAIKKEIEIINKENPHAKLEIIS-ESASIIENSVSN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++VLF+ +       V   S+ L++I T  LL     TL   ++ GI 
Sbjct: 332 VISNIFTAAFLSVMVLFVFLKNVGLTGVIGISMPLSIIGTFVLLYFSNTTLNTVALGGIS 391

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +G+G+ VD++I+V E I       N        +G     S I  S +T ++  V   F 
Sbjct: 392 IGVGMLVDNSIVVLENIYRYRTSLNYGKIRGTYLGTKEVLSAIVGSTLTTIVVFVPFLFS 451

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-------------ID 524
            G     ++  A+ +  S+++S+F A+++V  +    +                     D
Sbjct: 452 EGIVLQMMKDLALAIVFSLVMSLFVAMTVVPMLAANYVNNLHRNKSKKLNFINKILNLFD 511

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
               +        +     + +   +   ++    +  L            +G I + + 
Sbjct: 512 NFIKNLTNTYGKLLGYAINKKKRILLFAILISIASAFLLPMVGMEFMPEGDEGVINVKLR 571

Query: 585 ANRPVDLS 592
             +  +L 
Sbjct: 572 TPQGSNLD 579



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 100/264 (37%), Gaps = 17/264 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + + + ++L  + +  E  +      ++   +   +   +   G+ V+    ++   
Sbjct: 244 PIMLKSGQVINLQDIANISEKQKEVSSIVRHNGKQAVVINISKSSDGNVVSAVNAIKKEI 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT- 698
           + I +  P + ++        I   +    ++  I +A  + + +   F     L  +  
Sbjct: 304 EIINKENPHAKLEIISESASIIENSVSN--VISNIFTAAFLSVMVLFVFLKNVGLTGVIG 361

Query: 699 -TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ L I  T           N  A+  +   +G  V++ +VV     +N+  Y TS+++
Sbjct: 362 ISMPLSIIGTFVLLYFSNTTLNTVALGGISIGVGMLVDNSIVVL----ENIYRYRTSLNY 417

Query: 758 RDL--IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
             +        E L   V +++   +  +P  ++   ++      +A  IV +   S+F+
Sbjct: 418 GKIRGTYLGTKEVLSAIVGSTLTTIVVFVP-FLFSEGIVLQMMKDLALAIVFSLVMSLFV 476

Query: 816 AAPILLFIYD------WRAKNARI 833
           A  ++  +         R K+ ++
Sbjct: 477 AMTVVPMLAANYVNNLHRNKSKKL 500



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 86/234 (36%), Gaps = 6/234 (2%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +      + Q+   +      L            V   + K I +I   S          
Sbjct: 798  ADIGITDTPQSIGRKNQSRYSLVTMDVYGRDVGSVTNDITKLINQIKLPSGYYIAFSGMS 857

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEF 718
            ++  +     I+ +I++ I + + +  +F+        + ++ L  T +     LF    
Sbjct: 858  EVMMDSFSSLILSIILAIILVYMVMASQFESLINPFIIMFSIPLAFTGSWVLLFLFKTPL 917

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++  +   L L+G  VN+ +V+ + +  ++  +    +  D + ++    L   + T++ 
Sbjct: 918  SVMGLIGTLVLVGIVVNNGIVLIEYI--DILRHRDGYAATDAVLRAAPTRLRPILMTALT 975

Query: 779  AFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +  +P+ +  G    ++    + +A G+  +   ++ +   + L   +   K
Sbjct: 976  TILGQIPLIISNGDNAEMLRGMGLVIAGGLTTSTLLTLIVIPLLYLIFDNISTK 1029


>gi|322421748|ref|YP_004200971.1| acriflavin resistance protein [Geobacter sp. M18]
 gi|320128135|gb|ADW15695.1| acriflavin resistance protein [Geobacter sp. M18]
          Length = 1069

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 85/620 (13%), Positives = 192/620 (30%), Gaps = 27/620 (4%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           +I    LLI L + +     +     +P   I L           +       V   +  
Sbjct: 22  LIVAASLLIGLYSVIATPREEEPQIVVPMVDIYLP----------MPGSSPKEVEERVVT 71

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             ++    +        + RQ    IT+ F      E+   K+   +    + L     +
Sbjct: 72  TFEKKIWEINGVEYIYSASRQGMGIITVRFLVGEDMEDSLVKLYNKVMSNRNLLPPGSGE 131

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            L+V+ +  ++ IV      D+   HA+ +   + R+  D +   E+         +  +
Sbjct: 132 PLVVSKSIDDVPIVSLTLWSDRYDYHALRR---VARELCDDLQKVENVAHSEIKGGLSRE 188

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           L    DP+RL     T   ++      N S++   F       S      + D  +   +
Sbjct: 189 LKVRLDPARLSSYGLTPLSVTGALERANVSQRAGSFASGNREYSLDAGGFIADPSDAGRL 248

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
            ++         +    V     E     FF +      K L   +              
Sbjct: 249 VVSVKEGRPVYLSDVATVTDGVQEPKDYVFFGLGPAAAHKNLRGGVADY-----PAVTIA 303

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
            + +   +  +  E         +   +P ++ +   RN G      +        +A +
Sbjct: 304 IAKRKGANATWVAEDLLKRVEFQKGKIIPSEMQVTVTRNYGETAKDKNDELLFHMFLAAI 363

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
            + +L  + +  + G VA  +I + + LT+ + + +G TL   ++  ++  IG+ VD  I
Sbjct: 364 SVTILIAVFMGWRAGAVAAIAIPVTLALTMFIFNRIGYTLNRITLFALIFSIGILVDDAI 423

Query: 433 LVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGF 488
           +V E I             +         +    + +  + + + + F G   G  +R  
Sbjct: 424 VVVENIHRYFTTTKFKPLEAAVRAVDEIGNPTMLATLAVIASILPMGFVGGLMGPYMRPI 483

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
            +   ++++ S+  A+++          Y+ MK                 +         
Sbjct: 484 PVGASMAMVFSLLIALTVTP-----YFAYRFMKGESHYGTEAAPEESWMTSFYRRIMGRL 538

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                + +   S+ ++        I FK      +  +   +L ++    E   + D   
Sbjct: 539 LHDKKVRYGFLSMVVVLLLVSCSLIYFKAVTVKMLPFDNKSELQLIVDAPEGTTLEDNVR 598

Query: 609 QNFDGEKNFLVRLQYQPGDS 628
              +         +     S
Sbjct: 599 MVAELGDALRKVPEVTDFQS 618



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 5/156 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++AI++ I I +   W     A   + + +  T+  F   G   N   + A++  IG 
Sbjct: 358 MFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMFIFNRIGYTLNRITLFALIFSIGI 417

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + + +     TT     +   ++++E    ++  ++A   S+LPM   GG 
Sbjct: 418 LVDDAIVVVENIHRYFT--TTKFKPLEAAVRAVDEIGNPTMLATLAVIASILPMGFVGGL 475

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +   +    +  +  +V +   ++ +          
Sbjct: 476 MGPYMRPIPVGASMAMVFSLLIALTVTPYFAYRFMK 511



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 59/164 (35%), Gaps = 6/164 (3%)

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
                 ++  I +L+  W R  +   L  +  + L +   L   AL G  F  T++   + 
Sbjct: 908  AAFAAVMVLIYVLVVAWFR-DFTTPLVIMAPIPLTLIGILPGHALMGAFFTATSMIGFIA 966

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L G  V + +++ D     ++     +   + I  +        + T+ A  +    +  
Sbjct: 967  LAGIIVRNSIILID--FAELRR-REGMPLDEAIIDAGAVRFRPMLLTAAAVVVGSFVILF 1023

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                +    A+ M  G + + + S      +   +  W+ K+ +
Sbjct: 1024 --DPIFQGLALAMMCGEIASTTLSRITIPILYFMVQSWKEKHKK 1065


>gi|71279757|ref|YP_267054.1| AcrB/AcrD/AcrF family protein [Colwellia psychrerythraea 34H]
 gi|71145497|gb|AAZ25970.1| AcrB/AcrD/AcrF family protein [Colwellia psychrerythraea 34H]
          Length = 1030

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/625 (12%), Positives = 176/625 (28%), Gaps = 41/625 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L  +IC  G+  A      +  + +FP     + +                 
Sbjct: 14  RRPVVAIVLSIIICIAGIWSA-----SKIPVLQFPKIDSASLV---------IETYYIGA 59

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V GF+    +   + +        +     +K+T     +        ++T  L  
Sbjct: 60  SADVVKGFITEPIERAAATVPGVEYVDSTSTSGSSKVTAWLKLNENSTLALAELTARLGQ 119

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L    +  ++  +       V   N      +     +  + RQ    +   E   
Sbjct: 120 IRFELPQGAQDPVVSVSRADRPFAVFYLNVQANG-NDLSRITDYLTRQVNPVLNAIEGVQ 178

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    +   L+    + + +       N             +       
Sbjct: 179 RVGIEGARTPAMRVWLNAQALQIFNLSASDVYQALATNNTIATMGYVENSRQK------- 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN    + +    +   E+            I           
Sbjct: 232 -------------IDIVANTQLSSVEEFQQLVISEVDGATIHLKDVAKIELAAEDTSVTA 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L                +     +        L                      +   
Sbjct: 279 RLNDKDAVYISIWPLPGANEIAIGDRLYEKVDELNKTLPHGISIDYAYDGTLYMRDALKE 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    LV +V+ +++   +  +V   +I ++++  +A + ++G +L L ++  IV
Sbjct: 339 IFTTLAETVILVGLVVVLLMGSFRSAIVPLITIPISILGAIAAMGIMGFSLNLLTVLAIV 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L +GL VD  I+V E +    R+  S F +  +   +    I    +T       + F  
Sbjct: 399 LSVGLVVDDAIVVVENVARLMRQGLSKFDAALISSRQLLVPIISMTLTLAAVYAPIGFLS 458

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---KMKSIDINPLSRFFLIP 535
              G   + FA T+ ++++IS   AI++   M  ++          +  +N L       
Sbjct: 459 GLTGVLFKEFAFTLAIAVIISGIVAITLSPIMSAYVSPKGGEESWLTTKVNHLFERLQRR 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +  +      V +  L         + +        +    +  +   P D S+  
Sbjct: 519 YGQLLTHIFKWQGQVFLIALVVSLLTVPFYLYSKKELAPIEDQATVMFVIQSPPDASMAY 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVR 620
           +  +   + +   +   G+K + + 
Sbjct: 579 NVAQMNPVVESLQEIEGGKKIWQII 603



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  A+  + T+ + I   +    + G   NL  V A++  +G  V+D +VV + +    
Sbjct: 360 SFRSAIVPLITIPISILGAIAAMGIMGFSLNLLTVLAIVLSVGLVVDDAIVVVENV---A 416

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +L    +S  D    S  + L   +  ++       P+       G +   FA  +A  +
Sbjct: 417 RLMRQGLSKFDAALISSRQLLVPIISMTLTLAAVYAPIGFLSGLTGVLFKEFAFTLAIAV 476

Query: 806 VVAASSSIFIAAPIL 820
           +++   +I   +PI+
Sbjct: 477 IISGIVAI-TLSPIM 490



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 92/275 (33%), Gaps = 13/275 (4%)

Query: 562  CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
                   +N  +  K    L +    P    +  S +  L+   +  Q     +    R+
Sbjct: 744  AYRVIPIVNDEVRSKTEAILSLDIKLPTGELLPVSAVADLKWKTVPRQLGTFAQQASFRI 803

Query: 622  QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                     +   L  ++    EI+PL    +      ++ +E     ++ + IS + + 
Sbjct: 804  YGGVAPGSNKEAALSAIEDAAKEILPLGYSIDYAGESRQLRKE-GNTLVMVLGISLLIVF 862

Query: 682  IYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAV---AAVLTLIGYSVNDK 737
            + + I+F  +   L  +  L        G   +  IE     +     ++TLIG    + 
Sbjct: 863  LVLSIQFNSFRDPL--VVLLGCVPLALSGALLIPYIELTTINIYSQIGLITLIGLIAKNG 920

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ +             +    + ++    L   + T+ A  +   P+ +    G    
Sbjct: 921  ILIVEFAN---HAQELGANKLAAVTEAATTRLRPILMTTAATILGHFPLVLVTGAGAEAR 977

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             S  I +  G+ +    ++FI     L + + R K
Sbjct: 978  NSIGIILVAGMFIGTIFTLFILPSFYLLLAEKRDK 1012


>gi|83951074|ref|ZP_00959807.1| RND family efflux transporter [Roseovarius nubinhibens ISM]
 gi|83838973|gb|EAP78269.1| RND family efflux transporter [Roseovarius nubinhibens ISM]
          Length = 1026

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/512 (13%), Positives = 152/512 (29%), Gaps = 39/512 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +   ++   GL  AL     + + D   + +      LG              
Sbjct: 9   RRPVLATVANLLLIVFGL-SALGGIAIRELPDVDNAVVTVTTSYLG-------------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +          RQ Q+++T+ F   R  +  A+ V   +  
Sbjct: 55  TSEVIDTDITETVEGAVASISGIRSISSESRQGQSRVTIEFEAGRDVDVAANDVRDAVGR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +     +  +      ++      D       E +  + R   D++   +   
Sbjct: 115 IRDDLPEEADAPEVEKSDADADPVMRLAVVSD--RMTTAEITDYLDRFIADRLATLDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    D   +     T A +                          N  
Sbjct: 173 SLRIYGERSFAVRIWLDRRAMAARKLTVADVQNALR--------------------RNNV 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +      S         N   ++     D+  D +            I   +A      
Sbjct: 213 ELPAGEVTSQDRQLSVRLNSRLQSIDDFRDVVLDRIAGYPVRLGDIARIEPGVADDSTIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         ++Q +     +        +R         +V   +      S   
Sbjct: 273 RSDGRDAVGIAVQRQSQSNTLQISQAVRAEIDKIRPTLPEGMEILVGSDDALFVGASIRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I  GLV++V+ + +   +  L+   +I ++++ +  L+   G +L   ++  ++
Sbjct: 333 VVNALVISLGLVVLVILLFLRSFRATLIPAITIPVSLVGSFMLIGAWGFSLNTLTLLALL 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I+      +S   +   G  +    +  +++T +   V L F  
Sbjct: 393 LAIGLVVDDAIVVLENIQRRIENGESPLVASIKGARQVTFAVLATSVTLIAVFVPLSFMP 452

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAM 510
           G   R    F   M  ++ IS F A++   A+
Sbjct: 453 GQVGRLFIEFGWVMAGTVAISTFVALTACPAL 484



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 70/183 (38%), Gaps = 8/183 (4%)

Query: 656  IVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFAL 713
              G   + +    G   V  ++ + + + +  +F+ +   L  + T+   +   +   AL
Sbjct: 836  FEGQSRTFKDTAAGANAVFALALLIVFLVLAAQFESFMHPLIILLTVPAGVAGAIYAMAL 895

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+  N+ +   ++ LIG    + +++ +      +L     S RD +  +    L   +
Sbjct: 896  GGLSLNVYSQIGIILLIGLVAKNGILIVEFAN---QLRDEGRSVRDAVILAAVLRLRPIL 952

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T ++  +  LP+ +    G     +    +  G+ +++   +F+   +   +  +    
Sbjct: 953  MTVLSTILGALPLFLATGAGAESRNAIGTVIIAGLALSSFLMLFVTPVLYDLLARFTKPR 1012

Query: 831  ARI 833
              +
Sbjct: 1013 GAV 1015



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 48/144 (33%), Gaps = 6/144 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +   L    T+ + +  +      +G   N   + A+L  IG  V+D +VV + +   
Sbjct: 353 RSFRATLIPAITIPVSLVGSFMLIGAWGFSLNTLTLLALLLAIGLVVDDAIVVLENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
            +      S      K   +     + TS+      +P++   G V      F   MA  
Sbjct: 410 QRRIENGESPLVASIKGARQVTFAVLATSVTLIAVFVPLSFMPGQVGRLFIEFGWVMAGT 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRA 828
           + ++   ++     +   +     
Sbjct: 470 VAISTFVALTACPALASKVLRKGR 493


>gi|332882584|ref|ZP_08450196.1| heavy metal efflux pump, CzcA family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332679384|gb|EGJ52369.1| heavy metal efflux pump, CzcA family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1443

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 78/682 (11%), Positives = 187/682 (27%), Gaps = 54/682 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  ++  +  M+   G+  A      +  +D  P                   + +   
Sbjct: 11  KNKLFVGFMTLMLIFWGVWSA-----TRLPIDAVPDITNN-------------QVQIITS 52

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +  ++       ++  + +          R   + IT  F++          V  
Sbjct: 53  TPTLASQEVEQLVTFPIEQAIANIPGLEETRSISRFGLSVITAVFSEDMDIYFARQLVNE 112

Query: 118 FLQGVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            L+    ++           + T   +    ++      +    A +           Q+
Sbjct: 113 KLKEAQEQIPQGIGSPELSPVSTGLGEVYQYIIRPTEQSKNKYSAKDLRTMQDWIVARQL 172

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             ++   +       L Q     DP RLR +  + + +       N +  G     R   
Sbjct: 173 YGTKGIAEINSFGGELKQYEVVIDPDRLRAMGVSVSDIFTALEQNNQNTGGAYIDKRPNA 232

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                  +     +I  I +   T     K    V   S    GA  +        G  +
Sbjct: 233 YFIRGIGMARSLEDIGNIAVGKHTPPLFIKHVAEVRLGSAIRYGALTYNGEVDAVGGVVM 292

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +  +                    + +  +         ++       +          
Sbjct: 293 MLKGE--------------------NSHEVVSRIKEKLPTIQQSLPDDVVIEPFLDRTDL 332

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +    +      A +V+ VL + +   + GL+   +I L+++  L +++L G +  L
Sbjct: 333 VQRAIHTVEKNLLEGALIVIFVLVLFLGNLRAGLIVATAIPLSLLFALGMMNLFGVSANL 392

Query: 415 PSIAGI--VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN----- 467
            S+  I   + +  +V     V   +     +       +D     + S I  S      
Sbjct: 393 MSLGAIDFGIIVDGSVIVVEAVMHHLAIRKNRQPLTQAQMDDEVYHSASKIRSSAAFGEI 452

Query: 468 --ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             +   I  + L    G   R  A T+  +I  ++  +++ + AM   ++  K       
Sbjct: 453 IILMVYIPILTLVGVEGKMFRPMAQTVVFAISGALILSLTYIPAMSALLLPKKVSDKRSF 512

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                 +L      +     R  G  I     +  + +     +      +      V  
Sbjct: 513 AERMIAWLYRHYQPLFVRSIRLRGWIIGSTVVLFVLAVGIFSRMGGEFIPQLQEGDFVFE 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                 + ++ +LE+        + FD  K  + +       +         +   +   
Sbjct: 573 CILPPGTSLKQSLETSMQASRLIREFDEVKMVIGKTGSAEIPTDPMPLEASDIVIVLKSQ 632

Query: 646 VPLSTIQNTEIVGPKISRELIR 667
               + ++ E +G  I   L  
Sbjct: 633 DQWKSGRSYEELGDAIIERLKD 654



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 98/271 (36%), Gaps = 14/271 (5%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
             +   G   +  +     +  V  S L +++      Q         + + +       Q
Sbjct: 774  SLHRTGIDDVQHMMVATENGQVPMSQLATIKYELGPAQVSREAGKRRIVIGFNVQGRDVQ 833

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR-FKW 690
            + V ++ +K     +P             + +    + ++ V ++ + +   +++     
Sbjct: 834  SVVSDIEQKLKGVKLPTGYYFTYGGQFENLQQA-TDRLLIAVPVALLLIFFLLYLTFHSI 892

Query: 691  YFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              +L   + + +      G FAL   G+ F+++A    + L G +V + +V+      N 
Sbjct: 893  KQSLLIFSAIPMS--AIGGVFALLLRGMPFSISAGIGFIALFGVAVLNGIVLIGTF--NQ 948

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                   +    +       L   + T+M A +  LPMA+    G  V    A  +  G+
Sbjct: 949  LKKEGMTNLLHRVITGTEMRLRPVLMTAMVASLGFLPMALSQGAGAEVQRPLATVVIGGL 1008

Query: 806  VVAASSSIFIAAPILLFI---YDWRAKNARI 833
            V A   ++F+   + +     + WR  +A++
Sbjct: 1009 VSATFLTLFVLPLLYIAFNSTFSWRRPSAKV 1039



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 59/168 (35%), Gaps = 10/168 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + I + + +         L   T + L +   LG   LFG+  NL ++ A+    G 
Sbjct: 345 LEGALIVIFVLVLFLGNLRAGLIVATAIPLSLLFALGMMNLFGVSANLMSLGAI--DFGI 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDL-IDKSINETLGRSVYTSM----AAFISVLPMA 787
            V+  V+V + +  ++ +           +D  +  +  +   ++        +  +P+ 
Sbjct: 403 IVDGSVIVVEAVMHHLAIRKNRQPLTQAQMDDEVYHSASKIRSSAAFGEIIILMVYIPIL 462

Query: 788 VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G +    A  + F I  A   S+     +   +   +  + R
Sbjct: 463 TLVGVEGKMFRPMAQTVVFAISGALILSLTYIPAMSALLLPKKVSDKR 510


>gi|298492751|ref|YP_003722928.1| protein-export membrane protein SecD ['Nostoc azollae' 0708]
 gi|298234669|gb|ADI65805.1| protein-export membrane protein SecD ['Nostoc azollae' 0708]
          Length = 470

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 76/165 (46%), Gaps = 4/165 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ I+  I   I   I +LI++ + ++    L A  +L++    +   F L G+ 
Sbjct: 283 GATLGKDSIQSSIYAGIGGLILVLIFMVVYYRLP-GLIADVSLVIYSLLSWATFCLLGVT 341

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      S    ++          + +++
Sbjct: 342 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKSLYRSVESGFYRAFSSILDSNV 398

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             +I+   +   G  ++  FA+ +A G+ V+  ++I  +  ++  
Sbjct: 399 TTWIACAALFWLGSGLVKGFALTLALGVGVSMFTAITCSRTLMFL 443



 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 135/427 (31%), Positives = 206/427 (48%), Gaps = 35/427 (8%)

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               L +    +    V     I ++    +E   +++  RI+ +G+SE  IQ +G+ +I
Sbjct: 27  VPLGLDLRGGSQLTIQVKPSEEIKEITERELEAVKKVVEGRINGLGVSEPVIQTVGTDKI 86

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKK------------------------- 224
           L+QLPG  DP +  ++LG TA++ F    PN   +                         
Sbjct: 87  LVQLPGVNDPQQAERVLGGTAQLEFRTQKPNTETQIFALQVSRKELKAKQEELRKSNDKE 146

Query: 225 --GFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
                       +    +        ++G +L  A       T    V I FD  G   F
Sbjct: 147 AIAKNKEELQNNNRAITELFESTNPPLTGKYLKDAYGEPTQGT-NWNVAIRFDPKGGELF 205

Query: 283 FEVTRDNIGKPL-------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML 335
            ++T+   G            ++    +     +  I  G A I+G    E A  L   L
Sbjct: 206 ADLTKKLAGTGRTIGIFLDKELISSPTVGVEFASTGITGGSAVITGRLEAEEANNLGVQL 265

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           R G+LP+ + I E R VGA LG DSI     A + GL+L+++FM+V Y   GL+AD S+ 
Sbjct: 266 RGGALPVPVEIAERRTVGATLGKDSIQSSIYAGIGGLILVLIFMVVYYRLPGLIADVSLV 325

Query: 396 LNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMG 455
           +  +L+ A   LLG TLTLP IAG +L IG+AVD+N+L+ ER REE R  +S++ S++ G
Sbjct: 326 IYSLLSWATFCLLGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAGKSLYRSVESG 385

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           F RA+S+I DSN+T  IA   LF+ G G V+GFA+T+ L + +SMFTAI+  R +M   +
Sbjct: 386 FYRAFSSILDSNVTTWIACAALFWLGSGLVKGFALTLALGVGVSMFTAITCSRTLMFLAV 445

Query: 516 RYKKMKS 522
                + 
Sbjct: 446 SIPSWRK 452


>gi|146339512|ref|YP_001204560.1| RND family multidrug efflux protein [Bradyrhizobium sp. ORS278]
 gi|146192318|emb|CAL76323.1| Putative multidrug efflux transporter (RND family) [Bradyrhizobium
           sp. ORS278]
          Length = 1032

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/555 (11%), Positives = 156/555 (28%), Gaps = 40/555 (7%)

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                +                   S  Q  + I +    +        +V   +  V  
Sbjct: 72  ASAEGVD--------------YITSSSVQGTSTIQVFIKLNFDPSQALTEVLAKVNSVRY 117

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
            +  +    ++  TT +  S++    + +++   AI  S  + R     +   +      
Sbjct: 118 LIPKESNDPIVTKTTGQTTSVMYLGFSSEELSGSAI--SDYLTRVVQPVLSTVDGVAAAN 175

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                   +    +P ++     +   ++      N           F+  +      + 
Sbjct: 176 ILGGQTFAMRIWLNPEKMAGRNVSPTDVAAAIAANNFQSAAGQAKGYFIVSNITTNTGLT 235

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
           D                          +                 +              
Sbjct: 236 D--------------------VNQFKRMIVKAKDGGFVRMEDIATVELAAQSTDASVAFN 275

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                        Q +    ++    L   L+    P     V   +      S    + 
Sbjct: 276 GERAIFIGVDATPQGNPLNIVKGVRALFPDLQRNLPPSMKMKVAYDSTKFIQSSIDEVEH 335

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           T      +V++V+F+ +   +  ++   +I L+++    L+  LG ++ L ++  +VL I
Sbjct: 336 TLGEAVLIVIVVIFLFLASLRSVIIPVVTIPLSLVGVCTLMLALGFSINLLTLLAMVLAI 395

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG--- 481
           GL VD  I+V E I     + ++   +   G       +    IT       + F G   
Sbjct: 396 GLVVDDAIVVVENIHRHLEEGKAPVQAALQGAREIVGPVISMTITLAAVYAPIGFLGGLT 455

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G   R FA T+  S+++S   A+++   M   ++R  +           F  + +    +
Sbjct: 456 GSLFREFAFTLAGSVIVSGVIALTLSPMMCSVLLRSAEEGRFARLVNRVFGAMTNWYGRK 515

Query: 542 FMRARFWGVGISIL-FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
             R+  +    ++   +I  +        +  +  +    +     +    + +      
Sbjct: 516 LDRSLDYRPVTALFALTILGLVGFLYMHTSKELAPEEDQGIVFSITKAPKYANIDYINFY 575

Query: 601 LQIGDISFQNFDGEK 615
               D +FQ F    
Sbjct: 576 TDKLDKAFQKFPETD 590



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 47/384 (12%), Positives = 118/384 (30%), Gaps = 16/384 (4%)

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
             +   I         + + L F     + G AI+  L+ ++    +     A    +  
Sbjct: 121 KESNDPIVTKTTGQTTSVMYLGFS-SEELSGSAISDYLTRVVQPVLSTVDGVAAANILGG 179

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                 I +NP            +    A       +       I    T         +
Sbjct: 180 QTFAMRIWLNPEKMAGRNVSPTDVAAAIAANNFQSAAGQAKGYFIVSNITTNTGLTDVNQ 239

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT---- 632
               +    +         + +E       +   F+GE+   + +   P  +        
Sbjct: 240 FKRMIVKAKDGGFVRMEDIATVELAAQSTDASVAFNGERAIFIGVDATPQGNPLNIVKGV 299

Query: 633 -RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             +   +++ +   + +    ++         E+       V+I  + + +++       
Sbjct: 300 RALFPDLQRNLPPSMKMKVAYDSTKFIQSSIDEVEHTLGEAVLIVIVVIFLFLA---SLR 356

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  + T+ L +          G   NL  + A++  IG  V+D +VV + +    +  
Sbjct: 357 SVIIPVVTIPLSLVGVCTLMLALGFSINLLTLLAMVLAIGLVVDDAIVVVENIH---RHL 413

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVA 808
               +      +   E +G  +  ++       P+   G   GS+   FA  +A  ++V+
Sbjct: 414 EEGKAPVQAALQGAREIVGPVISMTITLAAVYAPIGFLGGLTGSLFREFAFTLAGSVIVS 473

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
              ++   +P++  +    A+  R
Sbjct: 474 GVIAL-TLSPMMCSVLLRSAEEGR 496



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 60/152 (39%), Gaps = 8/152 (5%)

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI-EFNLTAVAAVLTLIG 731
             + I + + +  +F+     L  + ++ + I   L     FG+   N+     +LTL+G
Sbjct: 851 GFALIIIFLVLAAQFESLRDPLVIMISVPMAIVGAL-IPLFFGLATMNIYTQVGLLTLVG 909

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                 +++ +   +     +  +  R  I+KS    L   + T+ A    ++P+     
Sbjct: 910 LITKHGILMVEFANE--LQLSEGLDRRRAIEKSARIRLRPILMTTAAMVTGLVPLLTASG 967

Query: 790 -GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            G +   S  + +  G+ +    ++F+   + 
Sbjct: 968 AGAASRFSIGLVVVAGMSIGTLFTLFVLPAVY 999


>gi|84993529|dbj|BAE75931.1| putative transporter [Staphylococcus aureus]
          Length = 687

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 66/513 (12%), Positives = 175/513 (34%), Gaps = 57/513 (11%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGI 424
           +   +  +VL +         +   S  + +   + ++SLL     +P++     +++G+
Sbjct: 39  VGIIVAFVVLLITFGSVIAAGLPIISALIGLASGVGIISLLTYAFDIPNVTLTLAVMIGL 98

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            + +D  + +  R R+  +        + +    A S +  + +T +IA   L   G   
Sbjct: 99  AVGIDYALFILFRYRQVMKTETDYIKGIGLAIGTAGSAVVFAGVTVVIAVCGLSLVGIDF 158

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           +        +S++ ++F+A++++ A++    +  K+  +  N                  
Sbjct: 159 LAVMGFASAISVIFAVFSALTLLPALISIFHKRIKVNKLQSNFKKDIDTPWSKFITGNAL 218

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKG----------------------GIQLG 582
           A      I ++ +   +  +     + G+                           + + 
Sbjct: 219 AAVLLGLIILVAAAIPVSHMRLGIPDDGVKPADSTQKKAYDIISDKFGEGFNGQIPMLIN 278

Query: 583 VLANRP---------VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           V   +            +     + +++ I      + D +   +V +  Q  ++ +   
Sbjct: 279 VKDKKDDPQGLQQDLQSVYKDIKDKKNVDIVTPPQMSKDNDYALMVVIPKQGPNAESTND 338

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRF 688
           ++  ++    +       +        I+ ++ +K      +   +I  +A  + + +  
Sbjct: 339 LVHDLRDYHKDAQDKYGFKTEISGQSVINIDMSKKLNEAIPLFATVIVVLAFFLLMIVFR 398

Query: 689 KWYFALGAITTLILDITKTLGFF----------ALFGIEFNLTAVA-----AVLTLIGYS 733
                L A+   +L +  TLGF            LFGIE     +A      +  L G +
Sbjct: 399 SILIPLKAVLGFVLSLMATLGFTTLVMQDGFMKGLFGIETTGPMLAFLPVITIGILFGLA 458

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           ++ +V +  R+ +    Y+ +      I   + E+    V  ++  F            +
Sbjct: 459 MDYEVFLMSRIHEE---YSKTGDNDYSIKVGLKESGPVIVAAALIMFSVFFAFVFQEDVM 515

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           I S  + +AFG++  A     +  P L  ++  
Sbjct: 516 IKSMGMALAFGVLFDAFVVRMMLIPALTKLFGK 548



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 65/186 (34%), Gaps = 7/186 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG-AITTLILDITKTL 708
              N +             G    ++  I   + + I F    A G  I + ++ +   +
Sbjct: 14  DNHNVQTELTGTGMTSTEVGGNSELVGIIVAFVVLLITFGSVIAAGLPIISALIGLASGV 73

Query: 709 GFFALFGIEFNLTAVAAVLTL-IGY--SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
           G  +L    F++  V   L + IG    ++  + +  R R   ++  T   +   I  +I
Sbjct: 74  GIISLLTYAFDIPNVTLTLAVMIGLAVGIDYALFILFRYR---QVMKTETDYIKGIGLAI 130

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  V+  +   I+V  +++ G   +       A  ++ A  S++ +   ++   + 
Sbjct: 131 GTAGSAVVFAGVTVVIAVCGLSLVGIDFLAVMGFASAISVIFAVFSALTLLPALISIFHK 190

Query: 826 WRAKNA 831
               N 
Sbjct: 191 RIKVNK 196


>gi|296447591|ref|ZP_06889512.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
 gi|296254906|gb|EFH02012.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
          Length = 1084

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/591 (10%), Positives = 149/591 (25%), Gaps = 40/591 (6%)

Query: 15  CCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS 74
              G L  L        +   P       +             L     + +   +    
Sbjct: 22  VLAGALAFL-----DLPVAPLPQVDFPTIV---------VSAQLPGAGPEIMATSIAAPL 67

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
           +     +        +    Q +I L F   R  +  A  V   +    + L        
Sbjct: 68  ERRLGQIAHVTEMTSASSLGQTRIVLQFDIDRDIDGAARDVQAAIDAARADLPATLHMRP 127

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
               T    + ++    +                    ++   E   Q L        + 
Sbjct: 128 SYRKTNPADAPLVI-LTLASKTLAPSRLYELASDILQQRLSRLEGVGQVLVGGSSAPAVR 186

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
            E DP  L Q       +       N +                          +     
Sbjct: 187 VELDPKALAQYGVGLEDIRAALASANANSP--------------------KGEIVDSERR 226

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPS 314
               AN           +                 +   +  V +  ++           
Sbjct: 227 FQIYANDRATRASDYRSLVVAYRNGAPLRLEEIAEVVDSVEDVRNEALMNGERSVAVYVF 286

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
            +   +   T++       +L A         ++         S    +    +   LV 
Sbjct: 287 RQPGSNVIETVDRIKNEMPLLEAALPSTIDLALKSDRSNTIRASLRETETALVVAVLLVT 346

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +++F  +   +  L+   +I  ++I T   + L G +L   S+  +++  G  VD  I+V
Sbjct: 347 LIVFAFLRDLRATLIPTVAITASIIGTFGAIWLAGMSLNNFSLMALIVAAGFVVDDAIVV 406

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL---FFFGGGAVRGFAIT 491
            E I+           +   G      T+   +++ +     +       G   R FA+T
Sbjct: 407 QENIQRHIEAGMGCVEAAVRGAREVAFTVTAISVSLIAVFTPILLMGGLLGRLFREFAVT 466

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF--MRARFWG 549
           + L++L+S+  +++    +   + + +   S     +    L      + +     R   
Sbjct: 467 LSLAVLVSLVLSLTTTPMLCAVLSKRRSAHSAPRFDVVAPLLRGYGRTLDWALRHGRLVL 526

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
             +                  +     G +   ++A+       +R  L  
Sbjct: 527 AILLATIGANYWLFSIIPKGFFPQQDTGRLAGMIVADESASFESMRRKLAQ 577



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 72/159 (45%), Gaps = 8/159 (5%)

Query: 673  VIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLI 730
            V  + + + I + I ++       I + +    +   L    LFG++F++ A+  V+ LI
Sbjct: 916  VAGAFVIVYIVLGILYESLVHPVTILSTLPSAGVGAVLALM-LFGMDFSVVALIGVILLI 974

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW- 789
            G    + +++ D   +  +     ++ R+ I ++        + T+MAA    +P+A+  
Sbjct: 975  GIVKKNAIMMIDFALEAQRA--QRLAPREAIFRAGMMRFRPIMMTTMAAIFGAIPLALTF 1032

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              GG +     + +  G++ +   +++    + L++ ++
Sbjct: 1033 GDGGELRRPLGVAIVGGLIFSQLLTLYTTPVVYLYLEEF 1071



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 71/218 (32%), Gaps = 6/218 (2%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             V  Q          R+   +      +     +         I   L       V+  
Sbjct: 283 VYVFRQPGSNVIETVDRIKNEMPLLEAALPSTIDLALKSDRSNTIRASLRETETALVVAV 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +  LI           L     +   I  T G   L G+  N  ++ A++   G+ V+D
Sbjct: 343 LLVTLIVFAFLRDLRATLIPTVAITASIIGTFGAIWLAGMSLNNFSLMALIVAAGFVVDD 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSV 793
            +VV + +    +     +   +   +   E   T+     + +A F  +L M    G +
Sbjct: 403 AIVVQENI---QRHIEAGMGCVEAAVRGAREVAFTVTAISVSLIAVFTPILLMGGLLGRL 459

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              FA+ ++  ++V+   S+     +   +   R+ ++
Sbjct: 460 FREFAVTLSLAVLVSLVLSLTTTPMLCAVLSKRRSAHS 497


>gi|13471452|ref|NP_103018.1| RND efflux transporter [Mesorhizobium loti MAFF303099]
 gi|14022194|dbj|BAB48804.1| probable RND efflux transporter [Mesorhizobium loti MAFF303099]
          Length = 1053

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 65/597 (10%), Positives = 166/597 (27%), Gaps = 41/597 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++   +   GL            +   PSA                   L   
Sbjct: 8   RRPVATLLMSFALVLGGLFA-----YKFLPVAALPSAEFPVV---------NVSASLPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +     +  + +        S    Q  I + F  +R  +  A  V   +  
Sbjct: 54  SPETMATSVATPLIKQFATIAGIDSISTSNSLGQTSIAIQFVLNRDIDAAAADVQAAIAR 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L                 + +L   ++        +            +   +   
Sbjct: 114 TQKSLPPQMTSPPSYRKVNPADAPILL-MSLVSDTVPLTDLDAFAENVISPSLSTIDGVA 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q     +    +  + DP+ L     +  ++       N++    +        ++  Q 
Sbjct: 173 QVSIFGQQKYAVRIQIDPTALAARGISIDQLQAAVASANSNTPLGVLQ------NNKQQL 226

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +++                    ++                 +   +       
Sbjct: 227 TITANTQLTNA--------------AGFSNLIIATKNGHPVRLGEVTRVVDSVQTTTTAS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++    +    +          +      +   +   
Sbjct: 273 WYDGTRAIIMAVQRQPDANTVDVVDKVKAMLPSFQDQMPAAAQIKLLNDRSTSIRQAVDD 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+F+ +      ++   ++ +++I TL  + L G ++   S+ G+ 
Sbjct: 333 VQFTLLLTIALVVMVIFVFLRRVTATIIPAVAVPISLIATLGAMFLFGFSIDNISLMGLT 392

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L +GL VD  I++ E I         S F +   G      TI   +I+ +   + +   
Sbjct: 393 LAVGLVVDDAIVMLENIFRHMEEDGLSAFDASLKGAREIGFTIISISISLVAVFIPVLLM 452

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
           GG   R    FA+ + ++IL SMF ++++   +   +  +     ++             
Sbjct: 453 GGVIGRIFNEFAVVVTVAILASMFVSLTLTPMLCSRLLSVTKADREAHAPGHKHDLVTRG 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               + F     + V +  + +  +   L           +   Q+ V      D+S
Sbjct: 513 YDRVLSFCLRHTFLVFLVFIGTAAASVWLIEVSPKGFFPQEDISQISVTTIARQDIS 569



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/214 (14%), Positives = 81/214 (37%), Gaps = 11/214 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-----K 668
           +    + +  Q         V++ VK  +              +    S  + +     +
Sbjct: 275 DGTRAIIMAVQRQPDANTVDVVDKVKAMLPSFQDQMPAAAQIKLLNDRSTSIRQAVDDVQ 334

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             + + I+ + M+I++++R +    +     + + +  TLG   LFG   +  ++  +  
Sbjct: 335 FTLLLTIALVVMVIFVFLR-RVTATIIPAVAVPISLIATLGAMFLFGFSIDNISLMGLTL 393

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  V+D +V+ + +     +    +S  D   K   E     +  S++     +P+ +
Sbjct: 394 AVGLVVDDAIVMLENIF--RHMEEDGLSAFDASLKGAREIGFTIISISISLVAVFIPVLL 451

Query: 789 WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
            GG +      FA+ +   I+ +   S+ +   +
Sbjct: 452 MGGVIGRIFNEFAVVVTVAILASMFVSLTLTPML 485



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 76/172 (44%), Gaps = 8/172 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF 718
                 L  +G++ +  + + + I + I ++ +   L  +T L   +   +      G++ 
Sbjct: 844  TFQDSLANQGLL-IGGAILTIYIVLGILYESFIHPLTILTGLPSAVLGAVVALRFAGMDL 902

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++ AV  +L LIG    + +++ D   +  +     +S +D I K+        + T++A
Sbjct: 903  SVIAVIGILMLIGIVKKNGIMMVDVALELRRE---GMSAKDSIHKACLMRFRPIMMTTLA 959

Query: 779  AFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            A +   P+A+       +     + +  G++ + + ++F+   I +++ ++ 
Sbjct: 960  ALMGTFPIALGTGASAELRQPLGVAVVGGLLASQALTLFVTPVIYVYMENFS 1011


>gi|91781148|ref|YP_556355.1| AcrB/AcrD/AcrF family cation efflux protein [Burkholderia
           xenovorans LB400]
 gi|91693808|gb|ABE37005.1| cation/multidrug efflux pump, AcrB/AcrD/AcrF family, RND
           superfamily [Burkholderia xenovorans LB400]
          Length = 1063

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 71/517 (13%), Positives = 155/517 (29%), Gaps = 42/517 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L  +I  IG L AL     ++  D FP                   +V + 
Sbjct: 9   LRRPYTFVVLAILILIIGPLSAL-----KTPTDIFPDIRIPV-----------ISVVWQY 52

Query: 61  D--EDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                D + G +    +  L + +                I + F       N   +VT 
Sbjct: 53  TGLPPDQMAGRITSTFERSLTTTVNDIQHIEAESVNGFAVIKIFFQPGVNISNANAQVTA 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q    +L       L++      + I+    +   +           + Q    +   
Sbjct: 113 IAQTQLRQLPPGTTPPLILNYNASTVPIIQLALSGKGLSEQ--NLGDLALNQLRPALVTV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                         ++  + +P+ ++    +   ++      N         +       
Sbjct: 171 AGASIPYPFGGKSREVQIDVNPAAMQARGLSAQDVANALASQNLLTPIGTEKI------- 223

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                        G H      N  P   K + D+    +     +     N+       
Sbjct: 224 -------------GDHEYTLQLNNAPSALKALGDLPIKAVNGTTVYIRDVANVRDGNPPQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +               +S    I          +A                    
Sbjct: 271 TNIVHVDGKRSVLMSVLKNGSVSTLGIISGIKQHVLDAKASLPDALQIAPIGDQSLFVRA 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S       I A L  +++ + +   +  ++   SI L ++ ++A LS LG TL + ++
Sbjct: 331 AISGVAREGVIAAALTSLMILLFLGSWRSTVIIATSIPLAILGSIATLSALGETLNIMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     + + V  ++  G ++  +  F + +   I  V +
Sbjct: 391 GGLALAVGILVDDATVTIENINWHLEQGKQVEEAILDGAAQIVTPAFVALLCICIVFVPM 450

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           FF  G   R   + M  +++ +M ++  + R ++  +
Sbjct: 451 FFLDGV-ARFLFVPMAEAVIFAMISSFILSRTLVPTM 486



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 58/154 (37%), Gaps = 4/154 (2%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           VI +A+  L+ +     W   +   T++ L I  ++   +  G   N+  +  +   +G 
Sbjct: 340 VIAAALTSLMILLFLGSWRSTVIIATSIPLAILGSIATLSALGETLNIMTLGGLALAVGI 399

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D  V  + +              + I     + +  +    +   I  +PM    G 
Sbjct: 400 LVDDATVTIENIN---WHLEQGKQVEEAILDGAAQIVTPAFVALLCICIVFVPMFFLDGV 456

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               F +PMA  ++ A  SS  ++  ++  +  +
Sbjct: 457 ARFLF-VPMAEAVIFAMISSFILSRTLVPTMAKY 489



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 51/141 (36%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  L   +   +          ++ A+   +  +G +  + ++V    R+  
Sbjct: 908  SWADPFVIVMALPAALAGIIWMLFATHTTLSVPALTGAIMCMGVATANSILVVSFCRE-- 965

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +L      F+  ++          + T+++  I + PMA+    GG         +  G+
Sbjct: 966  RLAEHGDPFKAALEAGFTR-FRPVLMTALSMIIGMAPMALALGEGGEQNAPLGRAVIGGL 1024

Query: 806  VVAASSSIFIAAPILLFIYDW 826
            + A ++S+ +   I   ++  
Sbjct: 1025 LFATTASLLLVPVIFCIVHSR 1045


>gi|223936309|ref|ZP_03628222.1| heavy metal efflux pump, CzcA family [bacterium Ellin514]
 gi|223895171|gb|EEF61619.1| heavy metal efflux pump, CzcA family [bacterium Ellin514]
          Length = 1090

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/570 (12%), Positives = 156/570 (27%), Gaps = 47/570 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++IL  +    G    L     ++ LD  P       I          +   E  
Sbjct: 29  RNKFLVIILTIIAVAGGTWGLL-----RTPLDAVPDLSDVQVI---------VYTDWEGR 74

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +            K           ++ + + F D         +V  +L  
Sbjct: 75  SPDLVEDQITYPISTRFIAAPKVKFVRGESMFGKSFVYVIFEDGTDIYWARSRVIEYLNA 134

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L       +    T                     +            +   +   
Sbjct: 135 VRGMLPEGVNPVIGPDATGVGWVYEY-ALVDKSGKHSLADLRSFQDWHLRYALESVKGVA 193

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q   + DP++L         +       NN   G +F V         + 
Sbjct: 194 EIAPVGGFVKQYQVDLDPNKLVAYGIQIGDIIDRIRKSNNDVGGKIFEVASTEYYVRGRG 253

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +I                            G   +          P        
Sbjct: 254 YIKSVEDIE-------------------NIPLKTSQGTPVYIRNVGKVHLGPDLRRGVAE 294

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    I+      A L++        +           S + 
Sbjct: 295 LNGQGEVVGGIVVMRYGQNALTVIQDVKRKLAELKSSLPEGVEVVTTYDRSDLINRSIAT 354

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +      + +V +V  + + + +  LVA  ++ + +IL+   +  LG T  + S+ GI 
Sbjct: 355 LREKLLEESIIVALVCLVFLWHVRSALVAIITLPVAIILSFLPMYYLGLTSNIMSLGGIA 414

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVF----------CSLDMGFSRAYSTIFDSNITAL 471
           + +G  VD+ I++ E   ++    +              ++          +F S +   
Sbjct: 415 IAVGAMVDAAIIMIENAHKQLEHFRDEHGREPDSRERVVAIIAAAKSVGRPLFFSLLVIT 474

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G   R  A T   ++  + F ++++   +M+ ++R +          
Sbjct: 475 VSFLPVFSLTGQEGRLFRPLAFTKTFAMFFASFISLTLAPVLMVLLVRGRIAPEAKNPIN 534

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSI 558
                I        +R R+  +  + +   
Sbjct: 535 RFLIWIYQPFVHFVLRFRWSVIVGAGIVVF 564



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 86/260 (33%), Gaps = 15/260 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            +   +S +  ++ +         +   E   LV   +    +   +  ++   ++I E V
Sbjct: 830  KSQIISHIPISMLADISYKTGPPSIRNENGQLVGFVFVDITTDDISGYVQQASRRINEQV 889

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF---KWYFALGAITTLILD 703
                    +  G     +   K ++ ++I   A++I++ I          L  +  +   
Sbjct: 890  KFPPGFYFQWGGQFEYLQSAEKRLM-IVIPFTALIIFVLIYLNTKSLVKTLIVLLAVPFS 948

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMK---LYTTSISF 757
            +        L G   ++     ++ L G      VV+    D+  +  K      +    
Sbjct: 949  LVGAFLLVYLLGYNMSVAVWVGLIALAGLDAETGVVMLLYLDQAWEKFKATGRMKSVKDL 1008

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFGIVVAASSS 812
             + + +   + +   V T  A    +LP+        G  V+   A PM  G++ +A   
Sbjct: 1009 EEAVREGAVQRIRPKVMTVCAILFGLLPIMWSPATQAGADVMKRIAAPMIGGVITSAMLE 1068

Query: 813  IFIAAPILLFIYDWRAKNAR 832
            + I   I +       +  R
Sbjct: 1069 LLIYPAIYVIWRSRALRKLR 1088



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/210 (16%), Positives = 77/210 (36%), Gaps = 15/210 (7%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIR 687
               R L  +K  + E V + T  +   +  +    L  K +   +I++ +  L+++W  
Sbjct: 319 QDVKRKLAELKSSLPEGVEVVTTYDRSDLINRSIATLREKLLEESIIVALVC-LVFLW-- 375

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR---- 743
                AL AI TL + I  +       G+  N+ ++  +   +G  V+  +++ +     
Sbjct: 376 -HVRSALVAIITLPVAIILSFLPMYYLGLTSNIMSLGGIAIAVGAMVDAAIIMIENAHKQ 434

Query: 744 ---MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSF 797
               R        S      I  +         ++ +   +S LP+    G    +    
Sbjct: 435 LEHFRDEHGREPDSRERVVAIIAAAKSVGRPLFFSLLVITVSFLPVFSLTGQEGRLFRPL 494

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           A    F +  A+  S+ +A  +++ +   R
Sbjct: 495 AFTKTFAMFFASFISLTLAPVLMVLLVRGR 524


>gi|269959874|ref|ZP_06174251.1| cation efflux system protein CusA [Vibrio harveyi 1DA3]
 gi|269835173|gb|EEZ89255.1| cation efflux system protein CusA [Vibrio harveyi 1DA3]
          Length = 1069

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/591 (11%), Positives = 164/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N +LV++ ++   +G L ++ N    + +D  P       I                  
Sbjct: 11  SNRFLVLVATLALVLGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   +   +
Sbjct: 118 APKLPPNAKPTLGPDATGVGWVYSYV-LQDKTGKHDLADLRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   E G         D    P        +
Sbjct: 237 LTSIEDIK------------------SLPLKVTEKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I       A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIAKVKDKLADLQRSLPEGVEIVATYDRSTLIDSAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLPEHKNPVNRGLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++     + I++     +       G  +      G  + +   
Sbjct: 519 RPLLNTSLKYPKAMIIIALGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTT 569



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 79/289 (27%), Gaps = 20/289 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  +                   +    L    +V + I
Sbjct: 816  WVFVDIDGRDLGSYVVEAQQVVADQLELPAGYSLAWSGQYEYMERAKDRL--SVVVPITI 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYS 733
            + I +L+Y   R         I  L L +    G     +    F++      + L G +
Sbjct: 874  AIIMLLLYFSFR---RVGEVMIIMLTLPLAMVGGLWLMHILNYNFSIAVGVGFIALAGVA 930

Query: 734  VNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++   +           +  +    +    D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHYKKLDAEESQQKLEAKDLTDAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +P+      G  V+   A PM  G+  A   ++ +   I         +
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQRELR 1039



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++     +   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVIAKVKDKLADLQRSLPEGVEIVATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDSAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|170747795|ref|YP_001754055.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
 gi|170654317|gb|ACB23372.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 1028

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 67/533 (12%), Positives = 156/533 (29%), Gaps = 26/533 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
             +         +   +  + ++  + ++       ++ +  +  T+ F      +   +
Sbjct: 49  VAITQSGAAPSELQTQVTKWVEDSIAGVRGVKHITSAITEGSSVTTVEFRLEVNTDRAVN 108

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  +   L     + ++       + I++             + S  +  +    
Sbjct: 109 DVKDAVSKIRINLPRTIDEPVISRVEIAGLPILVYGV--KAPAMTPADLSWLVEDKIARA 166

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +          +  ++     P RL  L  T A ++    L +    G    V   
Sbjct: 167 LQGVKGVGGVERVGGVAREVRVVLQPDRLLSLGITAADVNRQLRLTSADMAGGRGEVGGR 226

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S           ++    +                       G R+        +   
Sbjct: 227 EQSIRTLAASRTLRDLKATAIVLP--------------------GGRKVRLDDLARVEDG 266

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +             +     S  A  S            A  +A    ++  +++     
Sbjct: 267 IEEPRTFARFNGEPVVAFAVSRGAGASDAEVAAGVQRKIAEFQASYPDLQFELIDSSVSS 326

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
              GS      T    A L +IV+ + +   +  L+A  ++ L+V  T   +  LG TL 
Sbjct: 327 TI-GSYDSAMHTLIEGALLAVIVVLLFLRDWRATLIAAVALPLSVFPTFWAMDALGFTLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL---DMGFSRAYSTIFDSNITA 470
             S+  I L  G+ VD  I+  E +    R  +S + +          A   I  + I  
Sbjct: 386 GISLLAITLVTGILVDDAIVEIENVVRHMRLGKSPYRAAIEGADEIGLAVIAITATLIAV 445

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
                 +    G     F +T+ +S+ +S+  A  I   +  + +R +        P+ R
Sbjct: 446 FAPVSFMPGIAGRYFIQFGLTIAVSVFMSLLVARLITPMLAAYFLRDRGHHDEREGPVMR 505

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
            +      +++      +        SI S  LL +  +    + +    + +
Sbjct: 506 AYTRLVGWSVRHRVVTLFAGLALFAASIASTGLLPSGFIPKQDNARTLFMVEL 558



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 26/250 (10%), Positives = 71/250 (28%), Gaps = 6/250 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +   R V L  +    + ++      +            +            ++    
Sbjct: 247 IVLPGGRKVRLDDLARVEDGIEEPRTFARFNGEPVVAFAVSRGAGASDAEVAAGVQRKIA 306

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           +     P    +  +                 +  + +A+++ +     W   L A   L
Sbjct: 307 EFQASYPDLQFELIDSSVSSTIGSYDSAMHTLIEGALLAVIVVLLFLRDWRATLIAAVAL 366

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +  T       G   N  ++ A+  + G  V+D +V  + +   ++      S    
Sbjct: 367 PLSVFPTFWAMDALGFTLNGISLLAITLVTGILVDDAIVEIENV---VRHMRLGKSPYRA 423

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
             +  +E     +  +        P++   G        F + +A  + ++   +  I  
Sbjct: 424 AIEGADEIGLAVIAITATLIAVFAPVSFMPGIAGRYFIQFGLTIAVSVFMSLLVARLITP 483

Query: 818 PILLFIYDWR 827
            +  +    R
Sbjct: 484 MLAAYFLRDR 493



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 82/215 (38%), Gaps = 7/215 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V ++    +S A   ++    +  T       +   +    +I  E+    ++ +
Sbjct: 789  DRAVRVAVEANMENSEALGTLIAEALRTPTARTLPPGVTIKQTGDAEIMGEVFSGFLMAM 848

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L +   +    LF +  ++  V  +L L+G 
Sbjct: 849  GAGIMMVYAVLVLLFGSFLQPLTILFSLPLSVGGAILGLLLFQMPISMPVVIGILMLMGL 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I ++  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAVEEM---GRGVDRVTAIVEAGRKRARPIVMTTIAMAAGMVPSAMALGV 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            GG      A+ +  G++V+   S+     + L + 
Sbjct: 966  GGEFRAPMAVAVIAGLIVSTLLSLVFVPAVFLLMD 1000


>gi|332297475|ref|YP_004439397.1| protein-export membrane protein SecD [Treponema brennaborense DSM
           12168]
 gi|332180578|gb|AEE16266.1| protein-export membrane protein SecD [Treponema brennaborense DSM
           12168]
          Length = 578

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 91/182 (50%), Gaps = 5/182 (2%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
           ++ ++VG  +  + I +GI  ++   +A+++++ I +K    + AI   +L++       
Sbjct: 395 ESQQVVGASLGDKAINQGINALVFGLLAVMVFMLIWYK-GAGINAIVAQVLNLYIMFSIL 453

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           + F +   L ++A ++  IG +V+  V++++R+++ ++L  +  +    +          
Sbjct: 454 SAFNLTLTLPSIAGMILTIGMAVDANVIIFERIKEELRLGKSRAA---SVAAGFENAFWA 510

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +++  FI+ + ++  G   I  FA+ +A G+V +  +++ ++  ++        K  
Sbjct: 511 IMDSNITTFIAAIFLSQLGSGPIQGFAVSLAIGVVSSVFTALVVSR-LMFDFGTDVFKKQ 569

Query: 832 RI 833
           ++
Sbjct: 570 KL 571



 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 120/503 (23%), Positives = 208/503 (41%), Gaps = 75/503 (14%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVN--------------GFLQMYSDELRSFLKKEGI 86
            N + LGLDL GG  +V++ D D  V                 +    + L S + + G+
Sbjct: 134 NNSVKLGLDLSGGMSVVVKADLDAAVAQAGDTVTDVAAFKTEAMTQAIETLTSRIDRFGL 193

Query: 87  GVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +RQ   ++I +    +   + I   +          ++ +                
Sbjct: 194 TEPVIRQQGEDRIYIEMPGAAETDRINSIIMGKGILNFRLVDSEAT-------------- 239

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
                                      +   +  T     S  ++       D   +   
Sbjct: 240 -----------------------NSFLEYYTANPTSTFNASGELVNPGIIPADCEVMGLY 276

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                 +          K+  + G        G   +                       
Sbjct: 277 TKDDYGLDERIGYLVVKKEIALEGRHIKSADVGTDGISSK-------------------- 316

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
             P V+   D  GA  F   T  + G+ LA+V DG++ +   IN+AI  G+  +SG F +
Sbjct: 317 --PQVNFVLDSTGAEIFGNFTSAHTGESLAIVSDGKIKSYARINEAITGGQVALSG-FGL 373

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           + A  +  +L+   L + L +  ++ VGA LG  +I +G  A+V GL+ +++FM++ Y  
Sbjct: 374 DEAQNIKKVLQTAWLSVPLTVESQQVVGASLGDKAINQGINALVFGLLAVMVFMLIWYKG 433

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G+ A  +  LN+ +  ++LS    TLTLPSIAG++L IG+AVD+N+++ ERI+EE R  
Sbjct: 434 AGINAIVAQVLNLYIMFSILSAFNLTLTLPSIAGMILTIGMAVDANVIIFERIKEELRLG 493

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S   S+  GF  A+  I DSNIT  IA + L   G G ++GFA+++ + ++ S+FTA+ 
Sbjct: 494 KSRAASVAAGFENAFWAIMDSNITTFIAAIFLSQLGSGPIQGFAVSLAIGVVSSVFTALV 553

Query: 506 IVRAMMIFIIRYKKMKSIDINPL 528
           + R M  F     K + + I+  
Sbjct: 554 VSRLMFDFGTDVFKKQKLSISWR 576


>gi|167919614|ref|ZP_02506705.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei BCC215]
          Length = 1048

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/590 (12%), Positives = 159/590 (26%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFFASVAASVFLYVGIPKGFFPQQ 559



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGERPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|167846395|ref|ZP_02471903.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei B7210]
          Length = 1048

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 74/590 (12%), Positives = 159/590 (26%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRHAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFFASVAASVFLYVGIPKGFFPQQ 559



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 66/169 (39%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +    G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMLTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGERPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|126657801|ref|ZP_01728955.1| acriflavine resistance protein [Cyanothece sp. CCY0110]
 gi|126621018|gb|EAZ91733.1| acriflavine resistance protein [Cyanothece sp. CCY0110]
          Length = 1062

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/680 (11%), Positives = 180/680 (26%), Gaps = 43/680 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  + ++L  ++   GLL               P                         +
Sbjct: 34  NTIFAILLTLLMVVGGLL-----GYFSMTKQSNPDIDIAVAT---------VTTTWPGAD 79

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +   + ++       +     + I + F      +   +++   +   
Sbjct: 80  PQTIEQQVTSEIETEITSVENVKEVQSASYAGFSVINVEFTSQADPDEAIEELRQGVAQA 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  D ++ ++   +  +  I+        +    I Q+ E      D +       +
Sbjct: 140 EPELPEDAEQPIVEQVSVNDAPILTLALFG-DIDQTVISQAAE---DIQDNLEQVAGVSE 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  + +P RL  L  +   ++      N            +         
Sbjct: 196 VNLGGAREEVINVQMNPFRLATLGISPTTVATEIRNANQDVPLSEIESDLIGSQVRFYGR 255

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                 +  + +          +    V    D+   R F     +              
Sbjct: 256 FRSVEALQDLPIARLEGRVVRLSELAEVQRELDQEETRAFISTQGE------------TY 303

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +      G+  I     +  A                  V               
Sbjct: 304 QPVVSVGIKKVPGQDSIEVIERVLAAVEQIEQNPNLWPRGMEYQVIADESDIIWEQLGNL 363

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                     V +VLF+ +   +  L+A  SI L  + TLA+L L G TL    + G+VL
Sbjct: 364 FTNALQAMAAVFVVLFIAL-SWREALIAGLSIPLAFLGTLAVLWLTGQTLNNMVLIGMVL 422

Query: 423 GIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            +G+ VD  ILV E + E    +  +   +            F   +T ++A   L    
Sbjct: 423 ALGILVDVFILVMEGMHEFIFAEGMTFNQAALKTVKTYAPPAFAGQLTTILALFPLLAIS 482

Query: 482 GGAVRGF-------AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           G   +          I + LS  I++   I + R ++  I   +K  +ID    +     
Sbjct: 483 GTLGKFIELLPYTAIICLILSFTIAILIDIPLSRYLLGNIRSVEKKSTIDRLSEAASARW 542

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLL----FTHGLNYGIDFKGGIQLGVLANRPVD 590
            +      ++++       +       C++          +    +    + V       
Sbjct: 543 MNWSLNYTVKSKKTAWAWVLGTIALFFCVMTLLSQISVEFFPKGDQRNFSVNVELPPTTT 602

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L+V +   + L          D    +  +          Q      +       +P + 
Sbjct: 603 LNVSQEVADDLGEILREKDYLDSVIKYTGQRSNLVASGELQPAQGSYLVGFSGTFLPENQ 662

Query: 651 IQNTEIVGPKISRELIRKGI 670
            +          R  +++ +
Sbjct: 663 REQLSFEYLDDLRNELQRAV 682



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 84/242 (34%), Gaps = 7/242 (2%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 +  V+ +      +   +  +                ++     +L  ++ K+ E
Sbjct: 821  FTSNPEEEVISAGAVIEAVQAEAPLSITRRGGQRTVTVLAKNENRTTGEILADLQPKLQE 880

Query: 645  IVPLSTIQNTEIVG--PKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
            I            G   +   E        + ++   +   + ++   +      + T+ 
Sbjct: 881  IQESWPQGYDYSFGGETEDQAETFGSAGQALALAIFLVFAVLVLQLGSFRQPFIILLTIP 940

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              +  T+G F L  I F+ TA   ++ L+G  VND +V+ D M    +        R   
Sbjct: 941  FALIGTVGGFFLADIAFSFTAFIGIIALVGIVVNDAIVMVDTMNSYQQEGIK---LRLAA 997

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             K + + L   + TS+   I ++P+A+            + FG+V A + ++ +   + L
Sbjct: 998  AKGVADRLRPVLTTSITTIIGLIPLALS-DPTWMPLCSAIIFGLVAATAIALVVIPCLYL 1056

Query: 822  FI 823
              
Sbjct: 1057 LF 1058



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 85/247 (34%), Gaps = 10/247 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D    R+ + +         +   +K             +A    +E         +   
Sbjct: 288 DQEETRAFISTQGETYQPVVSVGIKKVPGQDSIEVIERVLAAVEQIEQNPNLWPRGMEYQ 347

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I +   +  +    L    +  +     A+ + ++I   W  AL A  ++ L    TL 
Sbjct: 348 VIADESDIIWEQLGNLFTNALQAM----AAVFVVLFIALSWREALIAGLSIPLAFLGTLA 403

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G   N   +  ++  +G  V+  ++V + M + +  +   ++F     K++    
Sbjct: 404 VLWLTGQTLNNMVLIGMVLALGILVDVFILVMEGMHEFI--FAEGMTFNQAALKTVKTYA 461

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYD 825
             +    +   +++ P+    G++   I          ++++ + +I I  P+    + +
Sbjct: 462 PPAFAGQLTTILALFPLLAISGTLGKFIELLPYTAIICLILSFTIAILIDIPLSRYLLGN 521

Query: 826 WRAKNAR 832
            R+   +
Sbjct: 522 IRSVEKK 528


>gi|254198137|ref|ZP_04904559.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei S13]
 gi|169654878|gb|EDS87571.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei S13]
          Length = 1048

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/590 (12%), Positives = 160/590 (27%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +     +  +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFLASVAASVFLYVGIPKGFFPQQ 559



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGERPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|213854211|ref|ZP_03382743.1| multidrug efflux system subunit MdtC [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 472

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/472 (11%), Positives = 120/472 (25%), Gaps = 35/472 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++ + I   G+L           +   P       +             L    
Sbjct: 10  RPVATILIAAAITLCGIL-----GFRLLPVAPLPQVDFPVIM---------VSASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S      +I L F   R     A  V   +   
Sbjct: 56  PETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L                 + ++    +        +       Q    I   +    
Sbjct: 116 QSLLPGGMPSRPTYRKANPSDAPIMI-LTLTSESWSQGKLYDFASTQLAQTIAQIDGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +    +P  L     +  ++       N  +          R        
Sbjct: 175 VDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQGAIEDSVHRWQIQTNDE 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   E                       +                ++   +  V +  +
Sbjct: 235 LKTAAE--------------------YQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGM 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             A      +     + +   T++        LRA         + +        S    
Sbjct: 275 TNAKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T AI   LV++V+F+ +  G+  L+   ++ +++I T A + L G +L   S+  + +
Sbjct: 335 EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
             G  VD  I+V E I            +   G      T+   +++ +   
Sbjct: 395 ATGFVVDDAIVVLENIARHLEARMKPLQAALQGTREVGFTVISMSLSLVAVF 446



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 54/138 (39%), Gaps = 7/138 (5%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + ++ + +++++++R      L     + + +  T     L G   N  ++ A+    
Sbjct: 338 LAISVALVILVVFLFLR-SGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMALTIAT 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV---LPMA 787
           G+ V+D +VV + +    +     +       +   E     +  S++        L M 
Sbjct: 397 GFVVDDAIVVLENI---ARHLEARMKPLQAALQGTREVGFTVISMSLSLVAVFLPLLLMG 453

Query: 788 VWGGSVIGSFAIPMAFGI 805
              G ++  FA+ ++  I
Sbjct: 454 GLPGRLLREFAVTLSVAI 471


>gi|90411548|ref|ZP_01219558.1| putative cation efflux system transmembrane protein [Photobacterium
           profundum 3TCK]
 gi|90327438|gb|EAS43791.1| putative cation efflux system transmembrane protein [Photobacterium
           profundum 3TCK]
          Length = 1041

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/591 (11%), Positives = 158/591 (26%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N ++V++ ++      + ++ N    + +D  P       I                  
Sbjct: 11  KNRFMVLVATLFLVAAGIYSVKN----TPIDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL    K  L    T                     E           ++   +   +
Sbjct: 118 APKLPPSAKPTLGPDATGVGWVYSYV-LTDKTGKHDLSELRSMQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DPS+LR    T  +++      N      +  V            
Sbjct: 177 IATVGGMVKQYQVQIDPSKLRAYNLTLQQVNKAIQAGNQEAGASVIEVAEAEHMVRATGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++                    V +   + G         D    P        +
Sbjct: 237 ISSISDLKN------------------VPLKVTDKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +    I       A L+         +           +    
Sbjct: 279 NGEGEAVGGIIVMRYGENAREVIHNVKAKLADLQRSLPDGVEIVPTYDRSELIDNAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V+IV  + + + +  LV   S+ + +++   ++   G    + S+ GI +
Sbjct: 339 YEKLLEEFIVVIIVCALFLFHIRSSLVIMISMPIGILVAFIIMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    N++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTNKNRWQVITKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AI++V  +M + IR                 + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAASAGLAITLVPVLMGYFIRGNIFPEHKNPVNRAVVGLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    +R     + I+      +   +   G  +      G  + +   
Sbjct: 519 RPLLNLSLRFPKTIIIIAFALMASAYYPIHKMGSEFIPPLDEGDLMYMPTT 569



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 78/291 (26%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +D    + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQQYRDSLDKLQTLPLVTPNGARIALADVADVRFEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               + ++ +   S  +     + ++                   +    L       V+ 
Sbjct: 816  WVFIDIEGRDLGSYVKEAQQRVAEQLKLPAGYSLVWSGQYEYMERAKARLTT-----VVP 870

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYS 733
            + IA+++ +            I    L +    G     +    F++      + L G +
Sbjct: 871  ATIAIIMVLLYLSFRRVGEVMIIMGTLPLAMVGGLWLMHILNYNFSIAVGVGFIALSGVA 930

Query: 734  VNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++   +           +  +           I +     +   + T     I +
Sbjct: 931  VEIGVIMLVYLNQAWHYKQLHAEENQQTLGKADLATAIKEGAGLRVRPVMMTVATVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+      G  V+   A PM  G+  A   ++ +   +     +   K  
Sbjct: 991  IPIMYGDGTGSEVMQRIAAPMIGGMASALLLTLVVLPAVFKLWKEVSHKLK 1041



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 88/235 (37%), Gaps = 3/235 (1%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    + +     ++      ++     +   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGIIVMRYGENAREVIHNVKAKLADLQRSLPDGVEIVPTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
              ++    +      ++   I ++I      F    +L  + ++ + I          G
Sbjct: 326 DRSELIDNAVENLYEKLLEEFIVVIIVCALFLFHIRSSLVIMISMPIGILVAFIIMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVY 774
           I  N+ ++  +   IG  V+  +V+ + + K+++    T+ +   +I K+  E      +
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMIENVHKHIERTPLTNKNRWQVITKAAEEVGAPLFF 445

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +   +S +P+    G     F+ P+AF    A ++S  +A  ++  +  +  +
Sbjct: 446 SLLIITLSFVPVFALEGQEGKMFS-PLAFTKTYAMAASAGLAITLVPVLMGYFIR 499


>gi|76809798|ref|YP_334058.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1710b]
 gi|167830197|ref|ZP_02461668.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 9]
 gi|217425616|ref|ZP_03457108.1| putative RND transporter, hydrophobe/amphiphile efflux-1 (HAE1)
           family [Burkholderia pseudomallei 576]
 gi|226198917|ref|ZP_03794480.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei Pakistan
           9]
 gi|254191461|ref|ZP_04897965.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|254259864|ref|ZP_04950918.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1710a]
 gi|254297129|ref|ZP_04964582.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 406e]
 gi|76579251|gb|ABA48726.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1710b]
 gi|157807854|gb|EDO85024.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 406e]
 gi|157939133|gb|EDO94803.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei Pasteur
           52237]
 gi|217391393|gb|EEC31423.1| putative RND transporter, hydrophobe/amphiphile efflux-1 (HAE1)
           family [Burkholderia pseudomallei 576]
 gi|225929017|gb|EEH25041.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei Pakistan
           9]
 gi|254218553|gb|EET07937.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1710a]
          Length = 1048

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/590 (12%), Positives = 159/590 (26%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFFASVAASVFLYVGIPKGFFPQQ 559



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 66/169 (39%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +    G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMLTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGERPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|224371365|ref|YP_002605529.1| acriflavin resistance family protein (AcrB/AcrD/AcrF family
           protein) [Desulfobacterium autotrophicum HRM2]
 gi|223694082|gb|ACN17365.1| acriflavin resistance family protein (AcrB/AcrD/AcrF family
           protein) [Desulfobacterium autotrophicum HRM2]
          Length = 1494

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 67/493 (13%), Positives = 151/493 (30%), Gaps = 36/493 (7%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFS 90
             D FP ++P          +     VL     D +   +    ++    L         
Sbjct: 33  PTDLFPESVPP---------QVAVITVLPGASADDMADKVTRTIEKELGSLSGLKRISSV 83

Query: 91  MRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQN 150
            R   + IT+ F  S+        V   +  V S L  D ++ LL   T+    ++    
Sbjct: 84  SRDGVSAITVEFLFSKPMGEAVTDVDNAVARVRSLLPQDVQEPLLYRITDATRPLMTLAL 143

Query: 151 NIDQVI-SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
                      +  +       D                   ++    D  RL     T 
Sbjct: 144 TPKPASFKALADIRLLAENDLRDDFMAVAGVGDVQVFGGHQREIEVRVDQDRLAGYGMTL 203

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
             +       N +  G +          G +YL++   E++G               + +
Sbjct: 204 VDVITGLARQNVASPGGIV------YGTGQEYLLKVSGELTG--------------LQAL 243

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
            ++       R+             + +                    +     T+    
Sbjct: 244 ENLPLGNGSGRQILLKDVARTRAGESDLRSRYHGNGREAVAVNLLRPEKGDTVKTLVGIK 303

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                +RA    I     E         +    + +      L ++++F+ +   +   V
Sbjct: 304 KALVHIRADYPDILFETTE-DQQPLIDLNVHGMRSSLWQAVFLTILLIFVFLADLRAAAV 362

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK--NQS 447
              +I L+ +  L +L +   TL + +++G+++ +G+ VD +++V E I   +R      
Sbjct: 363 VSVAIPLSFLAALIVLWISPYTLNMVTLSGLIVAVGMVVDGSVVVLENIHRHHRDTGYAD 422

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAI 504
              +   G ++    I    +T +   V + F   + G  +R   IT+  +++ S+  ++
Sbjct: 423 APKAALDGAAQVALPITAGMLTTVAVLVPVIFTTGYTGRTMRPLNITIVSTLIASLVVSL 482

Query: 505 SIVRAMMIFIIRY 517
           S++  +       
Sbjct: 483 SVIPILAARFFAR 495



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 79/250 (31%), Gaps = 7/250 (2%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                  VR    +      +      E              +   +     K+++  +  
Sbjct: 792  QTPSGRVRLASLATITTLQTQPFITRENQRTTIDITAGNAGLTIAQANGAAKQRLAGLSL 851

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                        +   E        ++I    + I +   F      +  I ++ L    
Sbjct: 852  PKGYTLDFGGTARDMAETQASLGHALVIGIALLFILLMAMFKSVIHPVTIILSIPLAAAG 911

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             L    +F   F + A+   + L G  VN+ +++ D +   +K     ++  + I +S+ 
Sbjct: 912  GLWGLLIFDKPFCMPALMGFILLGGTIVNNAILMLDFI---IKARAEGLAKDEAIVQSVR 968

Query: 767  ETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + T+++  +   P+      G   +    I  A G++V    ++     I   +
Sbjct: 969  LRLRPILITAVSTIVGFSPLIFETAVGLERMSPLGIAAASGLLVGTIVTMVAVPVIYSLL 1028

Query: 824  YDWRAKNARI 833
               + + A+I
Sbjct: 1029 DSLKLRMAKI 1038



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/239 (10%), Positives = 82/239 (34%), Gaps = 5/239 (2%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++  R+    L+             N L   +     ++   +   +  +     +   
Sbjct: 260 DVARTRAGESDLRSRYHGNGREAVAVNLLRPEKGDTVKTLVGIKKALVHIRADYPDILFE 319

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           T ++ + +       +       V ++ + + +++        A      + L     L 
Sbjct: 320 TTEDQQPLIDLNVHGMRSSLWQAVFLTILLIFVFLA---DLRAAAVVSVAIPLSFLAALI 376

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              +     N+  ++ ++  +G  V+  VVV + + ++ +    + + +  +D +    L
Sbjct: 377 VLWISPYTLNMVTLSGLIVAVGMVVDGSVVVLENIHRHHRDTGYADAPKAALDGAAQVAL 436

Query: 770 GRS--VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             +  + T++A  + V+    + G  +    I +   ++ +   S+ +   +    +  
Sbjct: 437 PITAGMLTTVAVLVPVIFTTGYTGRTMRPLNITIVSTLIASLVVSLSVIPILAARFFAR 495


>gi|317051278|ref|YP_004112394.1| acriflavin resistance protein [Desulfurispirillum indicum S5]
 gi|316946362|gb|ADU65838.1| acriflavin resistance protein [Desulfurispirillum indicum S5]
          Length = 1018

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 63/513 (12%), Positives = 144/513 (28%), Gaps = 42/513 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +    GLL      L +  +D  P                      +  
Sbjct: 9   QRPIGTIMVIMVAVFFGLLS-----LSRLPIDLMPDMTYPTL---------SVVTTYDNA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   + +  +     +        +  +  + I LSF      +  A+ +   L  
Sbjct: 55  SPEEVERLVTIPLERALGIISGIETINSTSSRGTSVIRLSFTWGTDLDVAANDIRDRLDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L     +  L         I++     +   +     + E I  R   +       
Sbjct: 115 AMRTLPEGIDRPQLRKFDVSAAPILILGATANLDPATLRHIAEEEIGSR---LERIAGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+    +P  L     T  ++       N                     
Sbjct: 172 GIEVWGGRERQITIRVNPVALESYSLTLQQVQRAVEEANRDYSFGE-------------- 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G            +  +   DI  +              I +         
Sbjct: 218 ------IQRGDFEYQLRYPSRLQGLEDFPDIIVERRNDNIIRLHQIATIEEGHVRQERIT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +      +     +   +     E        +       ++  + + +        +I
Sbjct: 272 RINGEPGVRIAVRKQDGSNTVEVAERVKREMLHIERAFPQFRMITLSDTSTYIQRAIANI 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   +  V+++LF  +   +  +    +I ++V+ T   +   G +L + ++ G+ 
Sbjct: 332 SYSMLYGGSLAVIVLLF-FLRDIRSTVAVATAIPVSVVATFVPVYFSGLSLNIMTLGGLA 390

Query: 422 LGIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           LGIG+ VD++I+V E I             +  +G  +    I  S +T ++  + LFF 
Sbjct: 391 LGIGMMVDNSIVVQENINFLRRTPPWDTRQTASLGARQVTPAIIASTLTTMVIFLPLFFT 450

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAM 510
            G +    R  A  +  ++L S+  A+ +V  +
Sbjct: 451 EGISGLMFRQMAYVVAFALLCSLIMALLLVPVL 483



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/261 (11%), Positives = 83/261 (31%), Gaps = 5/261 (1%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             L       G++    I +    +  + L  + +  E     +   +        +   
Sbjct: 225 YQLRYPSRLQGLEDFPDIIVERRNDNIIRLHQIATIEEGHVRQERITRINGEPGVRIAVR 284

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
           +    ++V     ++     I    P   +         I R +       +   ++A++
Sbjct: 285 KQDGSNTVEVAERVKREMLHIERAFPQFRMITLSDTSTYIQRAIANISYSMLYGGSLAVI 344

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + ++        +   T + + +  T       G+  N+  +  +   IG  V++ +VV 
Sbjct: 345 VLLFFLRDIRSTVAVATAIPVSVVATFVPVYFSGLSLNIMTLGGLALGIGMMVDNSIVVQ 404

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFA 798
           + +  N    T     R        +     + +++   +  LP+       G +    A
Sbjct: 405 ENI--NFLRRTPPWDTRQTASLGARQVTPAIIASTLTTMVIFLPLFFTEGISGLMFRQMA 462

Query: 799 IPMAFGIVVAASSSIFIAAPI 819
             +AF ++ +   ++ +   +
Sbjct: 463 YVVAFALLCSLIMALLLVPVL 483



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/218 (11%), Positives = 81/218 (37%), Gaps = 8/218 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        +      +   +++ +  +   +    T     +  ++  R+ I+ + 
Sbjct: 796  NQQRFLSLSANNEGRDIGSIGRDIEELLIGLEMSAEYSATLESDFQEQQKAFRELIIMIS 855

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ + + + +   ++     L  + ++ +     +    + G   N+ ++  ++ L G  
Sbjct: 856  LAVLLVFMILAALYESVKAPLIVMVSVPMAFIGAIMALWISGSTINMQSLIGMMMLAGIV 915

Query: 734  VNDKVVVYD-RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            VN+ +++ D  +R         +S      +S        + TS+   ++++P+A+    
Sbjct: 916  VNNAILIVDYAIR---LQARDGLSALQAGIESAKRRFRPVLMTSLTTMLALMPLALGIGE 972

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G       A  +  G+  + + S+FI   +  ++   R
Sbjct: 973  GSEAQAPMARAVIGGLFSSTAISLFIIPIVYHWVMAKR 1010


>gi|188534892|ref|YP_001908689.1| Multidrug resistance protein [Erwinia tasmaniensis Et1/99]
 gi|188029934|emb|CAO97818.1| Multidrug resistance protein [Erwinia tasmaniensis Et1/99]
          Length = 1032

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/599 (12%), Positives = 164/599 (27%), Gaps = 42/599 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   P       +             L     + +   +    +     +     
Sbjct: 29  YRLLPVAPLPQVDFPTIL---------VTASLPGASPETMAATVATPLERSLGQIAGISE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                 Q  + I L F+  R     A  V   +    S L                 + +
Sbjct: 80  MTSQSSQSSSTIILQFSLDRDINGAARDVQAGINAARSLLPSSMPSLPTYRKANPSDAPI 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    +      + E       Q   +I       Q       L  +  +  P +L Q  
Sbjct: 140 VM-LALSSSTRTSAELYDVAESQIQQRISQVSGVGQVSLRGSALPGIRIDLQPQQLSQYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
                +         ++   M         D   ++V+   ++                 
Sbjct: 199 VALDTVREAVANSTTNRPKGMLE------GDRQSWMVDGNGQLD--------------QA 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           K   D+       R         +   +    +              +  A  +   TI+
Sbjct: 239 KQYRDLVVSYQDGRAIRLSDVATVYDAVEDKYNVGYYNGVPSVTIGVTRSAGANMLATID 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                  +L           +          S    + T  I   LV+ V+F+ +   + 
Sbjct: 299 GIKAQLPLLEKALPADMKLAIVVDRAPNVRASLYDTEETLLIATLLVIGVVFIFLRDIRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
             +   ++ L++I T A++ LL  +L   S+  +++  G  VD  I+V E I        
Sbjct: 359 VAIPALALPLSLIGTCAVMYLLDYSLDNLSLMALIIATGFVVDDAIVVLENITRHIEAGL 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           S   +   G      T+    ++ +   + +   G   G   R FA+T+ +S++ISM  +
Sbjct: 419 SPVRASIKGAKEVSFTVLSMTLSLVAVFIPILLMGSIVGRLFREFAVTLTVSLIISMLVS 478

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI---------AIQFMRARFWGVGISI 554
           +S+   +   +++ +       +PLSR+                       R     + +
Sbjct: 479 LSLTPMLCARLLKRRSPTERRPHPLSRWIEQGLNRLLTGYAAALGWVMRHQRLTLFSLIL 538

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
              +            +     G +   + A++ V    +   ++       +    DG
Sbjct: 539 TVLLNIFLYSVVQKGFFPNQDTGLLMGMMRADQNVSFQAMEPKMKQFASLIAADPAVDG 597



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 85/257 (33%), Gaps = 7/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     R + LS V +  ++++               +   +    + +A    ++   
Sbjct: 245 VVSYQDGRAIRLSDVATVYDAVEDKYNVGYYNGVPSVTIGVTRSAGANMLATIDGIKAQL 304

Query: 640 KKITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
             + + +P    +       P +   L       +I + + + +                
Sbjct: 305 PLLEKALPADMKLAIVVDRAPNVRASLYDTEETLLIATLLVIGVVFIFLRDIRAVAIPAL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            L L +  T     L     +  ++ A++   G+ V+D +VV + +    +     +S  
Sbjct: 365 ALPLSLIGTCAVMYLLDYSLDNLSLMALIIATGFVVDDAIVVLENI---TRHIEAGLSPV 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
               K   E     +  +++     +P+ + G   G +   FA+ +   ++++   S+ +
Sbjct: 422 RASIKGAKEVSFTVLSMTLSLVAVFIPILLMGSIVGRLFREFAVTLTVSLIISMLVSLSL 481

Query: 816 AAPILLFIYDWRAKNAR 832
              +   +   R+   R
Sbjct: 482 TPMLCARLLKRRSPTER 498


>gi|167903363|ref|ZP_02490568.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 1048

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/590 (12%), Positives = 159/590 (26%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFFASVAASVFLYVGIPKGFFPQQ 559



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +V+ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIVMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGERPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|148259154|ref|YP_001233281.1| acriflavin resistance protein [Acidiphilium cryptum JF-5]
 gi|326402307|ref|YP_004282388.1| efflux system protein [Acidiphilium multivorum AIU301]
 gi|146400835|gb|ABQ29362.1| acriflavin resistance protein [Acidiphilium cryptum JF-5]
 gi|325049168|dbj|BAJ79506.1| efflux system protein [Acidiphilium multivorum AIU301]
          Length = 1065

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 69/494 (13%), Positives = 145/494 (29%), Gaps = 37/494 (7%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKK 83
                 +   P                   +V  L     D  +  L    +     +  
Sbjct: 28  GYRALPVSSLPQVDFPT-----------IQVVTKLPGASPDTASKLLTAPLERQFGQIAG 76

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
                    Q  + ITL F  S      A  V   +   +  L  + +     +      
Sbjct: 77  LAAMSSISSQGTSAITLRFDLSMPMTTAAQDVQAAINAASGTLPPNLQYPPTYSEVNPAD 136

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
           + +L+   +          +     + + ++   +   +      +   +  E +P+RL 
Sbjct: 137 APILT-LALTSRTLPLDAIADAAQTRLVPKLSQVKGVGKVTVEGGLTKAIRIEVNPARLA 195

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
               +   +       N S             + G    +                    
Sbjct: 196 AYGVSLEDVRNAIANANQSGAKGALDGHNQAYTIGANDQIT------------------- 236

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
                  D+                 +   L   L                 +   +   
Sbjct: 237 -MPAQYRDLIIAYRNGAPVRLSAVGTVSPGLENDLQSASYDGTPAVVVDIQRQPGANIVS 295

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T+       A LRA   P     V     G    S    + T    A LV++V+F+ +  
Sbjct: 296 TVADVRAALAGLRAAMPPGIDVKVVADRTGTIRASVRDVQITLITAALLVVLVIFLFLPN 355

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +  LV   ++ L+++ T A+++ LG  L   S+  + +  G  VD  I++ E I     
Sbjct: 356 PRAVLVPAVALPLSIVATFAVMNELGFQLDNLSLMALTVASGFVVDDAIVMIENIVRFIE 415

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR---GFAITMGLSILISM 500
           + +S   +  +G ++   TI    ++ +   + L F  G   R    FA+T+ ++++IS 
Sbjct: 416 QGESPLRAAYLGSAQIGFTIVSLTVSLVAVFIPLLFMPGVIGRLFSEFAVTLSIAVVISA 475

Query: 501 FTAISIVRAMMIFI 514
             ++++   M   +
Sbjct: 476 VVSLTLTPMMSARL 489



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 57/161 (35%), Gaps = 6/161 (3%)

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I   +    I  +  + + +L+           L     L L I  T       G + +
Sbjct: 326 TIRASVRDVQITLITAALLVVLVIFLFLPNPRAVLVPAVALPLSIVATFAVMNELGFQLD 385

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
             ++ A+    G+ V+D +V+ + +   ++      S          +     V  +++ 
Sbjct: 386 NLSLMALTVASGFVVDDAIVMIENI---VRFIEQGESPLRAAYLGSAQIGFTIVSLTVSL 442

Query: 780 FISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
               +P+    G +      FA+ ++  +V++A  S+ +  
Sbjct: 443 VAVFIPLLFMPGVIGRLFSEFAVTLSIAVVISAVVSLTLTP 483



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 82/239 (34%), Gaps = 6/239 (2%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +  +            ++   V L +      +       ++    ++    TI     
Sbjct: 818  EVAKIDQRYGPLAITREDQFPSVTLSFNLAKGASLGAAESAIRSAEQKLGVPDTISGRFS 877

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK-TLGFFALFG 715
                     + +    +  + + + I + + ++       I + +       L    LFG
Sbjct: 878  GAAAEFETSLAQEPWLIFAALVVIYIVLGVLYESTIHPVTILSTLPSAGIGALLALMLFG 937

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             +F L A+  ++ L+G    + +++ D   +     T  +S    I ++        + T
Sbjct: 938  ADFTLVALVGIVLLMGIVKKNGIIMVDFAIE--AERTRGLSPEAAITEAAILRFRPIMMT 995

Query: 776  SMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +MAA +  +P+ + GG    +     I +  G++V+   ++F    I L +   R    
Sbjct: 996  TMAALLGAVPLVLEGGAGAELRAPLGITIIGGLLVSQLLTLFTTPVIYLAMDRLRPARR 1054


>gi|330898444|gb|EGH29863.1| multidrug/solvent transporter [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 304

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 27/323 (8%), Positives = 70/323 (21%), Gaps = 29/323 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K  +                 +             +        +G          
Sbjct: 233 TIIGKTRL-------------QTAEQFGNIFLKVNTDGSQVRLKDVATVGLGAENYSTDS 279

Query: 302 VLTAPVINQAIPSGKAQISGNFT 324
                  +          +   T
Sbjct: 280 QFDGKPASGLAIKLATGANALET 302


>gi|299133843|ref|ZP_07027037.1| acriflavin resistance protein [Afipia sp. 1NLS2]
 gi|298591679|gb|EFI51880.1| acriflavin resistance protein [Afipia sp. 1NLS2]
          Length = 1049

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/599 (10%), Positives = 157/599 (26%), Gaps = 44/599 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
                +   P                   +   L     D     +    +     +   
Sbjct: 29  YWSLPVSSLPQVDFPT-----------VQVTTQLPGASPDVAASLITAPLERQLGQIPSL 77

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                +     ++I+L F  +R  +     V   +   N  L  +              +
Sbjct: 78  SSMTSTSSFGVSQISLQFDLNRDIDGATQDVQAAINAANGVLPKNLPYPPTYAKVNPADA 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            V++   +          S         ++       +      +   +  + D +RL  
Sbjct: 138 PVMT-LALTSDTISVRAMSDLADSLMAQRLAQISGVGRVSVLGGLKPAVRVQADLARLAA 196

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
                  +    V         + G +   D     Y +    ++S              
Sbjct: 197 YGLGMEDLRAAIV------GANVSGPKGSLDGKQQSYTIAANDQLSTADQYRDVVIAYRN 250

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
                V                   +   L     G               +   +    
Sbjct: 251 NAPVTV--------------GDVSQLIDGLENDKTGGWYKNKPAVIIEIQRQPGANVIDV 296

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L+          +          S    + T  +   LV +V+ + +   
Sbjct: 297 VQQIRAEIPKLQQAIPAGVNLTIVSDRTVTIRASVRDVQFTLILSVILVTLVVLLFLRSL 356

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  ++A  ++ L++I +  ++   G +L   S+  + +G G  VD  I++ E I      
Sbjct: 357 RATIIAGVALPLSLITSFGIMWFAGFSLDNLSLMALTIGTGFVVDDAIVMIENIVRHMEG 416

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            ++   +   G      T+    ++ +   + L F     G   R FA+T+ ++++ S  
Sbjct: 417 GETAMEAALRGAREIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIAVVTSAI 476

Query: 502 TAISIVRAMMIFI-------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554
            ++++   M   +            +++I              + +     R   V   +
Sbjct: 477 VSLTLTPMMCSRLLKRHGEEWEIPGLRAISDFIDRTVEFYHRTLLVVLRHQRLTLVVTLL 536

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                ++  +        +     I     A + V  + +++   ++     S  +  G
Sbjct: 537 TVVATTVLYIIAPKGFLPLQDTASIVAVTEAGQDVSFAEMQNRQTAVASVIESDADVTG 595



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 51/142 (35%), Gaps = 6/142 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSLRATIIAGVALPLSLITSFGIMWFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      +  +   +   E     +  +++     +P+    G V      FA+ +   
Sbjct: 411 VRHMEGGETAMEAALRGAREIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAAPILLFIYDW 826
           +V +A  S+ +   +   +   
Sbjct: 471 VVTSAIVSLTLTPMMCSRLLKR 492



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 75/205 (36%), Gaps = 6/205 (2%)

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A    ++ + K   +I     I              +      ++ + + + I + + +
Sbjct: 823  EALGDAVDALHKIEKQIGMPGNITGLYSGDAAEFSRSLSGQPWLILAAIVTIYIVLGVLY 882

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + +   +  ++TL       +    L G + ++  +  ++ L+G    + +++ D   + 
Sbjct: 883  ESYIHPITILSTLPSAGVGAILALILTGQDLSVIGLIGIILLMGIVKKNAIMMIDFALE- 941

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                    S  D I ++        + T++AA    LP+A+    G  +     + +  G
Sbjct: 942  -AERHEGRSPYDAIVQACLLRFRPIMMTTLAALFGALPLALETGTGSELRFPLGVSIIGG 1000

Query: 805  IVVAASSSIFIAAPILLFIYDWRAK 829
            ++V+   +++    I L +     +
Sbjct: 1001 LIVSQILTLYTTPVIYLALDRINRR 1025


>gi|22297747|ref|NP_680994.1| preprotein translocase subunit SecD [Thermosynechococcus elongatus
           BP-1]
 gi|22293924|dbj|BAC07756.1| protein-export membrane protein [Thermosynechococcus elongatus
           BP-1]
          Length = 476

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/225 (16%), Positives = 90/225 (40%), Gaps = 4/225 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   I   +      E   +       G   AQT     ++ +   +     +     V
Sbjct: 235 LDDRLISAPTVAVEYAETGIVGGSAEISGGFTAQTANDLAIQLQGGALPVPLEVVENRTV 294

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + ++ IR  +   +   + +L+++   ++    L A   L+L    T   F LFG+ 
Sbjct: 295 GASLGQDSIRDSLYAGLAGLVLVLVFMVAYYRLP-GLIADIALLLYAIFTYAAFLLFGVT 353

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      +    ++   +      + +++
Sbjct: 354 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKTLYRSVEAGFDRAFASILDSNV 410

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              I+   +   G   +  FA+ +A GI ++  +++  +   L +
Sbjct: 411 TTLIACAALFALGTGFVRGFAVTLAIGIGISMFTALTCSRTFLFY 455



 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 144/528 (27%), Positives = 226/528 (42%), Gaps = 79/528 (14%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD----EDDFVN 67
            +I  + LL+A    + ++               LGLDLRGG+ L L+V           
Sbjct: 7   WLIAILVLLMAATWVIVRTPA------------RLGLDLRGGAQLTLQVQTTDKVPQITP 54

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG-VNSKL 126
             L      ++  +   G+                            V       +  +L
Sbjct: 55  QVLAAVQGVVQRRIDGLGV------------------------AEAVVQTAGDDKLLVQL 90

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                        +    ++ +           IE+ ++               +    +
Sbjct: 91  PGVTDPQQAERILKGTAQLLFAVQKPGTETQLQIERQLQSQ-------------LLLEQA 137

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +  Q     DP  L+++     K                     L  S      +   
Sbjct: 138 QLLAEQAQKANDPEALKEIEAKLEK-----------------NRESLEKSQKAIASLFTP 180

Query: 247 VEISGIHLNG-ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA--VVLDGRVL 303
            +++G  L     +   P +    V + FD  GA  F ++T++  G   +  + LD R++
Sbjct: 181 SDLTGAMLTEAFASPVAPASPNWSVIVRFDSQGAELFAQLTKEIAGTGRSLGIFLDDRLI 240

Query: 304 TAPVINQAI-----PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           +AP +           G A+ISG FT +TA  LA  L+ G+LP+ L +VE R VGA LG 
Sbjct: 241 SAPTVAVEYAETGIVGGSAEISGGFTAQTANDLAIQLQGGALPVPLEVVENRTVGASLGQ 300

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           DSI     A +AGLVL+++FM+  Y   GL+AD ++ L  I T A   L G TLTLP IA
Sbjct: 301 DSIRDSLYAGLAGLVLVLVFMVAYYRLPGLIADIALLLYAIFTYAAFLLFGVTLTLPGIA 360

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G +L IG+AVD+N+L+ ER REE R  ++++ S++ GF RA+++I DSN+T LIA   LF
Sbjct: 361 GFILSIGMAVDANVLIFERTREELRAGKTLYRSVEAGFDRAFASILDSNVTTLIACAALF 420

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             G G VRGFA+T+ + I ISMFTA++  R  + + I    ++     
Sbjct: 421 ALGTGFVRGFAVTLAIGIGISMFTALTCSRTFLFYAISIPSLRRPHWF 468


>gi|134277260|ref|ZP_01763975.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 305]
 gi|167894976|ref|ZP_02482378.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 7894]
 gi|237812896|ref|YP_002897347.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Burkholderia pseudomallei MSHR346]
 gi|134250910|gb|EBA50989.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 305]
 gi|237504351|gb|ACQ96669.1| multidrug resistance protein MdtB (Multidrug transporter mdtB)
           [Burkholderia pseudomallei MSHR346]
          Length = 1048

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/590 (12%), Positives = 159/590 (26%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFFASVAASVFLYVGIPKGFFPQQ 559



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGERPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|167916715|ref|ZP_02503806.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 112]
 gi|254184425|ref|ZP_04891015.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1655]
 gi|184214956|gb|EDU11999.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1655]
          Length = 1048

 Score =  132 bits (331), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/590 (12%), Positives = 159/590 (26%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFFASVAASVFLYVGIPKGFFPQQ 559



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGERPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|227834184|ref|YP_002835891.1| putative drug exporter of the RND superfamily [Corynebacterium
           aurimucosum ATCC 700975]
 gi|262183326|ref|ZP_06042747.1| putative drug exporter of the RND superfamily protein
           [Corynebacterium aurimucosum ATCC 700975]
 gi|227455200|gb|ACP33953.1| putative drug exporter of the RND superfamily [Corynebacterium
           aurimucosum ATCC 700975]
          Length = 817

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/479 (12%), Positives = 140/479 (29%), Gaps = 45/479 (9%)

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           V      L  +  L++L+              +LG+GLA+D  + +  R REE  K +S 
Sbjct: 202 VVGGLSILGSLGILSILAGFLQVNVFAQAVVTLLGLGLAIDYGLFMVSRFREELDKGRST 261

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             ++ +  + A  T+  S     ++   LF F    ++  A     ++ ++   ++ ++ 
Sbjct: 262 QEAVAITTATAGQTVVFSAAMVAVSLSGLFLFPQAFLKSVAYGSISAVGLAALLSVMVLP 321

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL---- 564
           ++   +       ++         +           A      ++       I L     
Sbjct: 322 SLFGLLGPNIDKWTVRKTSRRGRRIEDTWWYRMPRWAMGRAGLMTTAICALLIALTLPVL 381

Query: 565 ----------------------FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                                       +       ++L V       L  V     S+Q
Sbjct: 382 GVKFGGINETYLPPNQDARVAQDQFNEQFPSFRTEPVKLVVKNATNEQLVDVVMQARSIQ 441

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                        +    L     D     R++  ++           +  T  +  +  
Sbjct: 442 GLTEPMGPKTATVDGTTVLGAGIQDRDDYARIVHELENIEAPEGVELYVGGTPAMEVESL 501

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE---- 717
             L        +   +A  I + + F  +   L AI   +L +  TLG   L  ++    
Sbjct: 502 DALFDTLPWMALYVVLATFILMALVFGSFILPLKAIIMTLLSLGATLGILTLMFVDGLGS 561

Query: 718 ----------FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                      +   V  +  + G S + +V +  RM +  +      S  + I      
Sbjct: 562 GLLNFTAGPLMSPILVLIIAIVFGLSTDYEVFLVSRMVEARR---RGASTDEAIAAGTAH 618

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYD 825
           T G     ++   +           ++   A  M F +++      + +   ++  + +
Sbjct: 619 TGGIITAAALIMIVVAGAFGFSDIVMMKYIAFGMIFALLIDATIVRMLLVPAVMHLLRE 677


>gi|54022224|ref|YP_116466.1| hypothetical protein nfa2600 [Nocardia farcinica IFM 10152]
 gi|54013732|dbj|BAD55102.1| putative membrane protein [Nocardia farcinica IFM 10152]
          Length = 764

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/520 (13%), Positives = 158/520 (30%), Gaps = 63/520 (12%)

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG---IVLG 423
            I   + L V+ +         V   +  + V    +++ L  + + +PS      +++G
Sbjct: 210 MIGMIVALFVMIIGFGAVVAAFVPIITALVGVGAASSVVMLGTSVIEIPSFTSFLTLMIG 269

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           I L++D  + +  R + E     S   +  +    A S +  + +T +IA   L   G  
Sbjct: 270 IALSIDYALFIVSRYKHELAVQDSPEEAAGIALGTAGSAVVFAGLTVIIALAGLSIVGVQ 329

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
            +    +   ++   ++ TA++++ A++    R+     + +                  
Sbjct: 330 FLTFMGLGGAIAAAFAVITAVTLMPALLGAFGRFLFKPKLPLVAKHDPEDDSVVTNGMRF 389

Query: 544 RA---RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD---------- 590
                +   V + +              LN G+  +  +       +  +          
Sbjct: 390 GKLIGKAPWVALVLSVVALGALAAPALNLNLGLPGEDSMPPETTVRKAYELRTEGFGEGS 449

Query: 591 ---------------------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                                ++ +R  L S    D        +    V L   P    
Sbjct: 450 NGVLNIVADLSAVPAEQRQEAVNALRDRLASYPEMDYVTAPQFSQDGAGVMLDGVPKAGP 509

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEI--------VGPKISRELIRKGIVGVIISAIAML 681
                 ++V++       L      E                 L +      I++  A L
Sbjct: 510 NNQATKDLVREARDAESELKDRYGMEYGVTGATAIYADIDHVLLSKIAPYLAIVAGAAFL 569

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE------------FNLTAVAAVLTL 729
           + I +       L A    +L +  T G   L   E             +   +  +  +
Sbjct: 570 LLILVFRSILVPLTAALGFLLSMAATFGATVLIFQEGALGLIEDPHPLVSFLPIMLIGLV 629

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            G +++ +V +  RMR+         S ++ +    +    R V  +    ISV    + 
Sbjct: 630 FGLAMDYQVFLVTRMREEF---VHGKSPKEAVVSGYHH-GARVVTAAAIIMISVFASFIL 685

Query: 790 GGS-VIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDWR 827
                + SF   +A G++  A    + +   +L+ +  W 
Sbjct: 686 ESDVTVKSFGFALAAGVLFDAFVVRMVVIPSLLVIMGKWS 725



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 68/223 (30%), Gaps = 6/223 (2%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
           D   +  V          A     +  K         +     E+ G      +   G  
Sbjct: 149 DDPNSVAVISVPFTIPGFADITDEDRQKATAVADAARAAGLTVEMSGSIAQENVQPGGKS 208

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL-- 729
            +I   +A+ + I        A   I T ++ +        L      + +  + LTL  
Sbjct: 209 EMIGMIVALFVMIIGFGAVVAAFVPIITALVGVGAASSVVMLGTSVIEIPSFTSFLTLMI 268

Query: 730 -IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            I  S++  + +  R +  + +     S  +    ++       V+  +   I++  +++
Sbjct: 269 GIALSIDYALFIVSRYKHELAV---QDSPEEAAGIALGTAGSAVVFAGLTVIIALAGLSI 325

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G   +    +  A     A  +++ +   +L     +  K  
Sbjct: 326 VGVQFLTFMGLGGAIAAAFAVITAVTLMPALLGAFGRFLFKPK 368


>gi|167581395|ref|ZP_02374269.1| AcrB/AcrD/AcrF family protein [Burkholderia thailandensis TXDOH]
          Length = 1048

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/558 (13%), Positives = 156/558 (27%), Gaps = 39/558 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSQNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLDRSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISPTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++ ++                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEEVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTDPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGKRAISVGVYKKPGANTVETVDKIRARLPELEASLPPSLTIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +I+ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISISLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L   G   G   R FA+T+ ++IL+S F ++++   M  +++R  +           F 
Sbjct: 450 PLLLMGGIIGRMFREFAVTLSMTILVSAFVSLTLTPMMASYLLRANRRDDGRAPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGV 550
                +A  + RA    +
Sbjct: 510 RAFARMAAAYERALDVAL 527



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALVVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +        + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATREQNMTSFDAIRSACLLRFRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++     I L++    ++  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLLTTPVIYLYLDTLSSRLK 1026



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 58/149 (38%), Gaps = 6/149 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +             K ++ET       S++    +LP+ + G   G +   FA+ +
Sbjct: 413 ---ARHVEAGERPLQAALKGLSETSFTIASISISLVAVLLPLLLMGGIIGRMFREFAVTL 469

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +  I+V+A  S+ +   +  ++     ++
Sbjct: 470 SMTILVSAFVSLTLTPMMASYLLRANRRD 498


>gi|91789345|ref|YP_550297.1| heavy metal efflux pump CzcA [Polaromonas sp. JS666]
 gi|91698570|gb|ABE45399.1| Heavy metal efflux pump CzcA [Polaromonas sp. JS666]
          Length = 1056

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 71/598 (11%), Positives = 162/598 (27%), Gaps = 48/598 (8%)

Query: 4   NPWLVILYSMIC-CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L +++    G+   L     ++ LD  P       I                  
Sbjct: 12  NRFLVLLATLMVSAWGVYSVL-----RTPLDALPDLSDVQVI---------IRTTYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PRIVENQVTYPLTTTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTDLYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    K +L    T                   A +           ++    +  +
Sbjct: 118 QSRLPPAAKASLGPDATGVGWIYQY-ALIDRSGTQDAGQLRALQDWFLKYELKTVPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L        K+       N    G +  +            
Sbjct: 177 VASVGGMVRQYQIVLDPEKLAAYAIAHTKVVEAIQKANQETGGSVLELGEAEYMVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                     V +     G              P      G +
Sbjct: 237 LQSLEDFRA------------------VPLMTTPAGVSVRLGDVARIQIGPEMRRGIGEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   ++  +   TI         L+A        +      G    +    
Sbjct: 279 DGEGEAAGGVIIMRSGKNALETIAAVKAKIQTLQASLPKGVEIVPTYDRSGLIERAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V F+ + + +   VA  S+ L ++    ++   G    + S+ GI +
Sbjct: 339 THKLLEEFLVVAVVCFIFLFHLRSAFVAIISLPLGILAAFIVMHYQGVNANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNITAL 471
            IG  VD+ +++ E   +                ++ +  +    +     +F S +   
Sbjct: 399 AIGAMVDAAVVMIENAHKHLEHWGHDHPGETLQGEARWRVIGDAAAEVGPALFFSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++  +   +++++  +M ++IR +          
Sbjct: 459 LSFIPVFTLEAQEGRLFSPLAFTKTYAMAAAAGLSVTLIPVLMGYLIRGRIPDEKSNPLN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    +    +RA    +  S +  + S+  L   G  +      G  L + + 
Sbjct: 519 RLLIAAYRPLLDIVLRAPKLTLLASAVILVISLWPLQHIGGEFMPRLDEGDLLYMPSA 576



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 89/289 (30%), Gaps = 15/289 (5%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L                 + V       + +       +   D   +   G 
Sbjct: 229 YMVRASGYLQSLEDFRAVPLMTTPAGVSVRLGDVARIQIGPEMRRGIGELDGEGEAAGGV 288

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
              +   +       A    ++ ++  + + V +    +   +  +    L  K +   +
Sbjct: 289 I-IMRSGKNALETIAAVKAKIQTLQASLPKGVEIVPTYDRSGLIERAVDNLTHKLLEEFL 347

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           + A+   I++   F    A  AI +L L I          G+  N+ ++  +   IG  V
Sbjct: 348 VVAVVCFIFL---FHLRSAFVAIISLPLGILAAFIVMHYQGVNANIMSLGGIAIAIGAMV 404

Query: 735 NDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  VV+ +      ++        + +      +I  +  E      ++ +   +S +P+
Sbjct: 405 DAAVVMIENAHKHLEHWGHDHPGETLQGEARWRVIGDAAAEVGPALFFSLLIITLSFIPV 464

Query: 787 AVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                     F   A    + +  AA  S+ +   ++ ++   R  + +
Sbjct: 465 FTLEAQEGRLFSPLAFTKTYAMAAAAGLSVTLIPVLMGYLIRGRIPDEK 513



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 87/264 (32%), Gaps = 19/264 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                   + + LS V     +     +  +N        V ++ +   S  Q     + +
Sbjct: 787  PFVTERGQRLVLSDVADLRITDGPPMLRSENARLSGWVYVDIRGRDLRSAVQDMQKAVAE 846

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            K         +         + + +L     V V  + + + + +++ F ++  AL  ++
Sbjct: 847  KVKLPPGYSISWSGQFEFLERATAKLK----VVVPFTLLIIFVLLYLTFKRFDEALLILS 902

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY--------DRMRKNMKL 750
            TL   +   +    L     ++      + L G S    V++         DR+    + 
Sbjct: 903  TLPFALVGGIWLLYLLSYNLSVAGAVGFIALAGVSAEFGVIMLLYLKSAWDDRL---EQG 959

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
             T++    D I +     +     T       + P+      G  V+   A PM  G++ 
Sbjct: 960  KTSASDLLDAIREGAVLRVRPKAMTVAVILAGLFPIMWGTGTGSEVMQRIAAPMVGGMIT 1019

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A   S+F+     L +   R + A
Sbjct: 1020 APLLSMFVIPAAYLLMRRPRERQA 1043


>gi|150002668|ref|YP_001297412.1| putative cation efflux system [Bacteroides vulgatus ATCC 8482]
 gi|149931092|gb|ABR37790.1| putative cation efflux system [Bacteroides vulgatus ATCC 8482]
          Length = 1026

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/688 (9%), Positives = 186/688 (27%), Gaps = 54/688 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    +++ ++    +GL+           +   P                   + ++V
Sbjct: 6   LQRPIAVLMAFTACFIVGLVT-----YFSLPVSLLPDIAIP-------------QITIQV 47

Query: 61  DEDDFVNGFLQM-YSDELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
             ++     L+      +R     +          R     I L F      +    +V 
Sbjct: 48  TGENSSARELENTVVTPVRRQLLQVAGLREIKSETRDGAGVIRLEFDFGVNTDLAFIEVN 107

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ-------NNIDQVISHAIEQSMEIIRQ 169
             +    + L  +  +   +  +  +I ++             +      +E        
Sbjct: 108 EKIDAAMNSLPKEVTRPKAIKASATDIPVLYVNMTLKNDGAYQETDEQQFLELCELAENV 167

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
              +I           +      L    D  +L     +   +       N      +  
Sbjct: 168 VKRRIEQLPEVAMADITGVPGRLLQIVPDKDKLAMTGISVEDIENTLSANNVEPGSMLVR 227

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
             +   +     L+    ++  I++                       G R         
Sbjct: 228 DGYYEYNIRIATLLRTPEDVKNIYI---------------------RKGERIMQLKELCK 266

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +       +   V             ++  +    ++          A   P     V  
Sbjct: 267 VDIVSQKEMGRSVAGGKRAVTLAIIKQSDEN-MDVMKEKLKETTDYFASLYPDIEFSVSR 325

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   + S  +   ++    + IV  + +   +  L+   S+  ++++T        
Sbjct: 326 NQTELLDYTISNLQQNLSLGFLFIFIVAVLFLGDVRSPLIIGISMVTSIVITFFFFYFCH 385

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            +L + S++G++L +G+ +DS I+V E I +   +  S+  S  +G +   + +  S++T
Sbjct: 386 VSLNVISLSGLILAVGMMIDSAIIVTENISQYRERGYSLKRSCAVGTTEMITPMLSSSLT 445

Query: 470 ALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +   V L F     G      A ++ + ++IS  T I ++  + +   +        ++
Sbjct: 446 TIAVFVPLIFMSGIAGAIFMDQAFSITVGLMISYITGIMLLPVLYLLFYKVGIRSKGFLS 505

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L  + +   + +   W      L    ++  L      + +  K  +       
Sbjct: 506 RRFDNLLKNEWLESFYDKGIDWVFSHKKLCVTGTLATLPLCVFLFYVMEKERMPQIDQNE 565

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +    +         +       +        Y            E+   +     
Sbjct: 566 LVARIEWNENIHVDENNRRVDDLMKQVDDRVTEHAAYVGMQDYILNGGSELSSTEAELYF 625

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
                     +   + +E+  K  + V+
Sbjct: 626 KTEKPSGIYSLQELLEKEIREKYPLAVV 653



 Score = 97.8 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S + M   +  +F+ +   L  +  + +D    L    +FG   NL +   ++   G
Sbjct: 865  LFVSLLLMYFILCAQFESFLQPLIVLMEIPIDTAFALLALWVFGHTLNLMSAIGIIVTCG 924

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VND ++  D + +   L    +   + I  +    L   + TS+    +++P+     
Sbjct: 925  IVVNDSILKMDAINE---LRKAGMPLVEAIHTAGRRRLRAIIMTSLTTVFAMVPLLFTSD 981

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G  +    +I M   +VV    S+FI   I  FIY    KN
Sbjct: 982  MGSEMQKPLSIAMIGSMVVGTLVSLFIIPLIYWFIYRKHDKN 1023



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/286 (8%), Positives = 86/286 (30%), Gaps = 7/286 (2%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V    +                    +    + +     +        ++ +   ++   
Sbjct: 219 VEPGSMLVRDGYYEYNIRIATLLRTPEDVKNIYIRKGERIMQLKELCKVDIVSQKEMGRS 278

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G++   + +  Q  +++   +            +      +      ++    I   
Sbjct: 279 VAGGKRAVTLAIIKQSDENMDVMKEKLKETTDYFASLYPDIEFSVSRNQTELLDYTISNL 338

Query: 670 IVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +  + + I  +         L    +++  I  T  FF    +  N+ +++ ++ 
Sbjct: 339 QQNLSLGFLFIFIVAVLFLGDVRSPLIIGISMVTSIVITFFFFYFCHVSLNVISLSGLIL 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  ++  ++V + +    +      S +        E +   + +S+      +P+  
Sbjct: 399 AVGMMIDSAIIVTENI---SQYRERGYSLKRSCAVGTTEMITPMLSSSLTTIAVFVPLIF 455

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G     F   A  +  G++++  + I +   + L  Y    ++ 
Sbjct: 456 MSGIAGAIFMDQAFSITVGLMISYITGIMLLPVLYLLFYKVGIRSK 501


>gi|254882168|ref|ZP_05254878.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|319643274|ref|ZP_07997902.1| cation efflux system [Bacteroides sp. 3_1_40A]
 gi|254834961|gb|EET15270.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|317385178|gb|EFV66129.1| cation efflux system [Bacteroides sp. 3_1_40A]
          Length = 1026

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/688 (9%), Positives = 186/688 (27%), Gaps = 54/688 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    +++ ++    +GL+           +   P                   + ++V
Sbjct: 6   LQRPIAVLMAFTACFIVGLVT-----YFSLPVSLLPDIAIP-------------QITIQV 47

Query: 61  DEDDFVNGFLQM-YSDELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
             ++     L+      +R     +          R     I L F      +    +V 
Sbjct: 48  TGENSSARELENTVVTPVRRQLLQVAGLREIKSETRDGAGVIRLEFDFGVNTDLAFIEVN 107

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ-------NNIDQVISHAIEQSMEIIRQ 169
             +    + L  +  +   +  +  +I ++             +      +E        
Sbjct: 108 EKIDAAMNSLPKEVTRPKAIKASATDIPVLYVNMTLKNDGAYQETDEQQFLELCELAENV 167

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
              +I           +      L    D  +L     +   +       N      +  
Sbjct: 168 VKRRIEQLPEVAMADITGVPGRLLQIVPDKDKLAMTGISVEDIENTLSANNVEPGSMLVR 227

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
             +   +     L+    ++  I++                       G R         
Sbjct: 228 DGYYEYNIRIATLLRTPEDVKNIYI---------------------RKGERIMQLKELCK 266

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +       +   V             ++  +    ++          A   P     V  
Sbjct: 267 VDIVSQKEMGRSVAGGKRAVTLAIIKQSDEN-MDVMKEKLKETTDYFASLYPDIEFSVSR 325

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   + S  +   ++    + IV  + +   +  L+   S+  ++++T        
Sbjct: 326 NQTELLDYTISNLQQNLSLGFLFIFIVAVLFLGDVRSPLIIGISMVTSIVITFFFFYFCH 385

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            +L + S++G++L +G+ +DS I+V E I +   +  S+  S  +G +   + +  S++T
Sbjct: 386 VSLNVISLSGLILAVGMMIDSAIIVTENISQYRERGYSLKRSCAVGTTEMITPMLSSSLT 445

Query: 470 ALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +   V L F     G      A ++ + ++IS  T I ++  + +   +        ++
Sbjct: 446 TIAVFVPLIFMSGIAGAIFMDQAFSITVGLMISYITGIMLLPVLYLLFYKVGIRSKGFLS 505

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L  + +   + +   W      L    ++  L      + +  K  +       
Sbjct: 506 RRFDNLLKNEWLESFYDKGIDWVFSHKKLCVTGTLATLPLCVFLFYVMEKERMPQIDQNE 565

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +    +         +       +        Y            E+   +     
Sbjct: 566 LVARIEWNENIHVDENNRRVDDLMKQVDDRVTEHAAYVGMQDYILNGGSELSSTEAELYF 625

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
                     +   + +E+  K  + V+
Sbjct: 626 KTEKPSGIYSLQELLEKEIREKYPLAVV 653



 Score = 97.8 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S + M   +  +F+ +   L  +  + +D    L    +FG   NL +   ++   G
Sbjct: 865  LFVSLLLMYFILCAQFESFLQPLIVLMEIPIDTAFALLALWVFGHTLNLMSAIGIIVTCG 924

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VND ++  D + +   L    +   + I  +    L   + TS+    +++P+     
Sbjct: 925  IVVNDSILKMDAINE---LRKAGMPLVEAIHTAGRRRLRAIIMTSLTTVFAMVPLLFTSD 981

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G  +    +I M   +VV    S+FI   I  FIY    KN
Sbjct: 982  MGSEMQKPLSIAMIGSMVVGTLVSLFIIPLIYWFIYRKHDKN 1023



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/286 (8%), Positives = 86/286 (30%), Gaps = 7/286 (2%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V    +                    +    + +     +        ++ +   ++   
Sbjct: 219 VEPGSMLVRDGYYEYNIRIATLLRTPEDVKNIYIRKGERIMQLKELCKVDIVSQKEMGRS 278

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G++   + +  Q  +++   +            +      +      ++    I   
Sbjct: 279 VAGGKRAVTLAIIKQSDENMDVMKEKLKETTDYFASLYPDIEFSVSRNQTELLDYTISNL 338

Query: 670 IVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +  + + I  +         L    +++  I  T  FF    +  N+ +++ ++ 
Sbjct: 339 QQNLSLGFLFIFIVAVLFLGDVRSPLIIGISMVTSIVITFFFFYFCHVSLNVISLSGLIL 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  ++  ++V + +    +      S +        E +   + +S+      +P+  
Sbjct: 399 AVGMMIDSAIIVTENI---SQYRERGYSLKRSCAVGTTEMITPMLSSSLTTIAVFVPLIF 455

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G     F   A  +  G++++  + I +   + L  Y    ++ 
Sbjct: 456 MSGIAGAIFMDQAFSITVGLMISYITGIMLLPVLYLLFYKVGIRSK 501


>gi|302384961|ref|YP_003820783.1| acriflavin resistance protein [Clostridium saccharolyticum WM1]
 gi|302195589|gb|ADL03160.1| acriflavin resistance protein [Clostridium saccharolyticum WM1]
          Length = 1019

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/619 (12%), Positives = 185/619 (29%), Gaps = 47/619 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++   +   GL   L + +  +    FP  +  +              V   
Sbjct: 8   LKRPVTTILVVLCLFVFGLSSVLSSKMELTPEMNFPMLLISS--------------VYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + VN  +    +E    L        S ++  + + L +            +   + 
Sbjct: 54  ANPEDVNDLVTRPVEEAVGTLSGIKNVQSSSQENVSIVVLEYEYGSDMNKAYSDLKKKMD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  D +   ++     E+ +V          +        +  + + +     S 
Sbjct: 114 NL--DLPDDVETPSVMEFNINEMPVVTLAVKDPSQNN----LYNYVNDKIVPEFEKISSV 167

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +     P ++ Q   T   +S      + +      GV     S    
Sbjct: 168 ASVGMSGGQKGYVSVRLIPEKMNQYHLTMNSISQAIKAADFTYPAGNTGVGKRDLSVSTG 227

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V     +                      +       +  +     +I          
Sbjct: 228 VEVGSVESLK--------------------KVPVVAGDGKTIYMEDIADITSTSESQEAI 267

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        + + + S     ++       L+     + + +++         + +
Sbjct: 268 GRYNGEDTITLSINKQQKNSAVDVSKSVTRTIETLKREFPNLDIVVID-DTSDQITSALN 326

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +   + +I++F+     K  L+   SI ++++++L L++ +G +L + +++ I
Sbjct: 327 SVKNTMVMAVVISMIIIFLFFGDIKASLIVGSSIPVSILVSLILMAAMGFSLNVITMSSI 386

Query: 421 VLGIGLAVDSNILVNERIREENR--KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           VLG+G+ VD++I+V E      +    +    +   G      +I    IT  +  + L 
Sbjct: 387 VLGVGMMVDNSIVVMESCFRSQKGTGFREYMQAALEGTGVVLQSILGGTITTCVVFIPLA 446

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G   +    T+   +L S+ +AI+IV          +K  S     +       
Sbjct: 447 LLEGLTGQMFKPLGYTIVFCMLASLLSAITIVPLCYSRFRPVEKQNSPMGGLVKALQNGY 506

Query: 536 DCIAIQFMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             I  + +  R   + +S +L     +              +G I +       + +   
Sbjct: 507 RRIVDKLLNRRAAVMIVSVLLLISSFVLATRLGFELMPEVDQGTITVTAEIKPGLKVEEA 566

Query: 595 RSNLESLQIGDISFQNFDG 613
              L+ L+    S ++   
Sbjct: 567 DKILKKLEDIVTSEEDLKS 585



 Score = 81.3 bits (198), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 37/246 (15%), Positives = 89/246 (36%), Gaps = 11/246 (4%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             D++ +        I   + Q           +     D  A  + ++           +
Sbjct: 777  TDIADIGYEDSPTAINRKNKQYLVTITGSFTDVVKTAKDKEAAKKNIDETIVNKYLNDMV 836

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKT 707
            +  +N+E    +            +  +   + I +  +F+   F+L  +TT+   +  +
Sbjct: 837  TRAKNSEDESMQEE---FSSLFKAIATAIFLIFIVMAAQFESPKFSLMVMTTIPFSLIGS 893

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
             GF A  G+  ++ ++   L LIG  VN  ++  D     +  Y  ++  R  + ++   
Sbjct: 894  FGFLAAAGVAISMPSLLGFLMLIGTVVNSGILYVD----TVNQYRATMDKRTALIEAGAT 949

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             L   + T++   ++++PMA+     G  +   A+    G+  +   S+ +       + 
Sbjct: 950  RLRPILMTTLTTVVAMIPMAMAIGKNGETMQGLALVNVGGLTASTILSLLMLPIYYSLMS 1009

Query: 825  DWRAKN 830
                KN
Sbjct: 1010 GKTDKN 1015



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 91/240 (37%), Gaps = 16/240 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + + +  +     + +  +   +    +   L   + Q   +V  ++ +    + +    
Sbjct: 247 KTIYMEDIADITSTSESQEAIGRYNGEDTITLSINKQQKNSAVDVSKSVTRTIETLKREF 306

Query: 647 PLSTIQNTEIVGPKISREL---IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
           P   I   +    +I+  L       ++ V+IS I + +          +L   +++ + 
Sbjct: 307 PNLDIVVIDDTSDQITSALNSVKNTMVMAVVISMIIIFL---FFGDIKASLIVGSSIPVS 363

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           I  +L   A  G   N+  +++++  +G  V++ +VV     ++         FR+ +  
Sbjct: 364 ILVSLILMAAMGFSLNVITMSSIVLGVGMMVDNSIVVM----ESCFRSQKGTGFREYMQA 419

Query: 764 SINET---LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           ++  T   L   +  ++   +  +P+A+     G +       + F ++ +  S+I I  
Sbjct: 420 ALEGTGVVLQSILGGTITTCVVFIPLALLEGLTGQMFKPLGYTIVFCMLASLLSAITIVP 479


>gi|326402306|ref|YP_004282387.1| efflux system protein [Acidiphilium multivorum AIU301]
 gi|325049167|dbj|BAJ79505.1| efflux system protein [Acidiphilium multivorum AIU301]
          Length = 1030

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 79/680 (11%), Positives = 172/680 (25%), Gaps = 44/680 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G L        Q  +   PS      +    D            
Sbjct: 9   RRPIGTTLLALGILIAGALA-----YLQLPVAPVPSIPIPAIVVFASD---------PGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +                + L F         A  V   +  
Sbjct: 55  SPAIMASTVAAPLEHALGTIPGVNDIRSQNSVGSTSVVLLFNPGPDISVYAHAVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L     +             V+S   +        +           ++       
Sbjct: 115 ALPNLPASMPRRPYYKEFNPASRPVMS-LALTSDTMSLAQIYNVADTVLDQRLAQVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    +   L     T+A +       N ++   +        +     
Sbjct: 174 QVGIYGGGSPAVRIRLNTQALAAAGLTSADVYNAVRSANVTQPLGVIEGPHRAWTLVANG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                      DI                ++   +A      
Sbjct: 234 QLTSATQ--------------------YRDIVLKSASGALLRLSDVASVIDGVANTQLAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +  A  +   T+E    L   +R    P     +          S + 
Sbjct: 274 SANGKPAITIEITKTADANVIKTVEGVRKLLPDIRTWLPPSVKLSILNDRTTTIRASVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LVL V+ + +      + A  ++ L++  T+ ++  LG TL   S+  + 
Sbjct: 334 IQITLLITILLVLAVVTLFMRRMTPTIAAGVTVPLSLAGTVGVMWALGFTLDNFSLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I  ++ +  S   +  +G  +   T+    I+ ++  + L   G
Sbjct: 394 ICVGFVVDDAIVMIENIVTQHERGLSGIEAALVGARQIGFTVISITISLVVVFLPLTLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+T+ ++ILIS   ++++   +    +        D         +    
Sbjct: 454 GVIGDLFYEFAMTLSVAILISGAISLTVTPMVCGHFMGRTPKVGRDSRIARGIDRLYRRS 513

Query: 539 AIQFMR------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
              + R      A  W +  S   ++     L+       I  +    +      P D+S
Sbjct: 514 LDAYARSLDWALAHRWLMLASFALTVALTIFLYIKVPKAFIPEQDSGLIISHTMAPSDVS 573

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             R      ++     +N   +             +  + ++   +K           + 
Sbjct: 574 FSRMKRLEARVVAAILKNPAVDTVSSRIGVANGFSTANRGQMFIQLKPLSERTASAQEVV 633

Query: 653 NTEIVGPKISRELIRKGIVG 672
                       +     V 
Sbjct: 634 RQLQARLARIPGITTFMFVA 653



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
               + +++    +    + A  T+ L +  T+G     G   +  ++ A+   +G+ V+
Sbjct: 345 VLAVVTLFM---RRMTPTIAAGVTVPLSLAGTVGVMWALGFTLDNFSLLALTICVGFVVD 401

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GS 792
           D +V+ + +   +  +   +S  +       +     +  +++  +  LP+ + G   G 
Sbjct: 402 DAIVMIENI---VTQHERGLSGIEAALVGARQIGFTVISITISLVVVFLPLTLMGGVIGD 458

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   FA+ ++  I+++ + S+ +   +         K  R
Sbjct: 459 LFYEFAMTLSVAILISGAISLTVTPMVCGHFMGRTPKVGR 498


>gi|154248088|ref|YP_001419046.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
 gi|154162173|gb|ABS69389.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
          Length = 1091

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 78/624 (12%), Positives = 171/624 (27%), Gaps = 49/624 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R      ++   +   GL+       P   +   P+                  +   L 
Sbjct: 9   RRPVATTLITFWVFAAGLVA-----YPLLPVGPLPAVDFPV-----------ISVTANLP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +     +        S      +ITL F  SR     A  V   +
Sbjct: 53  GASPQVVADTVASPLERHLGTIADVTEMTSSSTNGTARITLQFGLSRDINGAARDVQAAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               + L    + N          + ++   ++        +           ++   + 
Sbjct: 113 NAARADLPSSLRSNPTYRKANPADAPIMI-LSLTSDTLSRGQIYDAASTVLAQKLFQVDG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                     L  +  E +P+ L +       +       N            LR     
Sbjct: 172 VGDVTVGGGSLPAVRVELNPNALYKYGIGLEDVRAALASANAHAPKGAIDGDNLRFQIYA 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                   +                      ++                     +  +  
Sbjct: 232 NDQALKAED--------------------YRNLIVAYRADAPVRLSDIGETVDSIENIRS 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +         I       +   T++    L   L A   P     V          S 
Sbjct: 272 AGLANGKPATLLILFRSPNANIIATVDRVRALLPSLSASISPAIDLNVVMDRSATIRASL 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +    T AI   LV++V+F  +   +  LV   ++ ++++ TLA++ L G ++   S+  
Sbjct: 332 ADVTLTLAISVVLVIVVVFAFLRDWRAALVPIVAVPVSLVGTLAVMYLCGFSINNLSLMA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + +  G  VD  I+V E I        S   +   G      T+   +++ +   + +  
Sbjct: 392 LTIATGFVVDDAIVVLENIARHRAAGLSGVDAALKGAGEVSFTVVAMSVSLIAVFIPILL 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            G   G   R FA+T+  +IL+S+F +++    M   ++R ++ +       +  ++   
Sbjct: 452 MGGLIGKIFREFALTITATILVSLFVSLTTTPMMCALLLRNEEGRQHGRLFRASEWVFEA 511

Query: 537 CIAIQFM-------RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            ++           R R          ++     +            G I   + A++ +
Sbjct: 512 ALSAYRRSLAFCLDRPRILLAVFFATLALTVHLYIIIPKGFLPQQDTGRITGMIQADQSI 571

Query: 590 DLSVVRSNLESLQIGDISFQNFDG 613
               +   L+S      +    D 
Sbjct: 572 SFQAMSGKLKSFIDIVRADPAVDS 595



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 91/252 (36%), Gaps = 8/252 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +   A+ PV LS +   ++S++    +          L+  +    + +A    +  +  
Sbjct: 246 VAYRADAPVRLSDIGETVDSIENIRSAGLANGKPATLLILFRSPNANIIATVDRVRALLP 305

Query: 641 KITEI-VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++    P   +         I   L    +   I   + +++       W  AL  I  
Sbjct: 306 SLSASISPAIDLNVVMDRSATIRASLADVTLTLAISVVLVIVVVFAFLRDWRAALVPIVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + +  TL    L G   N  ++ A+    G+ V+D +VV + +    +     +S  D
Sbjct: 366 VPVSLVGTLAVMYLCGFSINNLSLMALTIATGFVVDDAIVVLENI---ARHRAAGLSGVD 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              K   E     V  S++     +P+ + G   G +   FA+ +   I+V+   S+   
Sbjct: 423 AALKGAGEVSFTVVAMSVSLIAVFIPILLMGGLIGKIFREFALTITATILVSLFVSL-TT 481

Query: 817 APILLFIYDWRA 828
            P++  +     
Sbjct: 482 TPMMCALLLRNE 493



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 80/190 (42%), Gaps = 8/190 (4%)

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +I   ++I  +     +  ++ +    + ++ + +A+ + + + ++ +     I + +  
Sbjct: 886  QIGLPASIHGSFQGTARAFQQSLSSQPLLILAALVAVYLVLGMLYESFAHPLTILSTLPS 945

Query: 704  --ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              +   L   A FG EFN+ A+  V+ LIG    + +++ D      +     ++ R+ I
Sbjct: 946  AGVGALLALMA-FGGEFNVMALIGVILLIGIVKKNAIMMIDVALDAERNG--GMAPREAI 1002

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +        + T+MAA    +P+ V    G  +     + +  G++ +   +++    
Sbjct: 1003 FHACLLRFRPIMMTTMAALFGAIPLMVGFGEGSELRRPLGVAVVGGLLFSQLLTLYTTPV 1062

Query: 819  ILLFIYDWRA 828
            + L+I   R 
Sbjct: 1063 VYLYIDRLRR 1072


>gi|148259153|ref|YP_001233280.1| acriflavin resistance protein [Acidiphilium cryptum JF-5]
 gi|146400834|gb|ABQ29361.1| acriflavin resistance protein [Acidiphilium cryptum JF-5]
          Length = 1030

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 79/680 (11%), Positives = 172/680 (25%), Gaps = 44/680 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G L        Q  +   PS      +    D            
Sbjct: 9   RRPIGTTLLALGILIAGALA-----YLQLPVAPVPSIPIPAIVVFASD---------PGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +                + L F         A  V   +  
Sbjct: 55  SPAIMASTVAAPLEHALGTIPGVNDIRSQNSVGSTSVVLLFNPGPDISVYAHAVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L     +             V+S   +        +           ++       
Sbjct: 115 ALPNLPASMPRRPYYKEFNPASRPVMS-LALTSDTMSLAQIYNVADTVLDQRLAQVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +    +   L     T+A +       N ++   +        +     
Sbjct: 174 QVGIYGGGSPAVRIRLNTQALAAAGLTSADVYNAVRSANVTQPLGVIEGPHRAWTLVANG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                      DI                ++   +A      
Sbjct: 234 QLTSATQ--------------------YRDIVLKSASGALLRLSDVASVIDGVANTQLAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +  A  +   T+E    L   +R    P     +          S + 
Sbjct: 274 SANGKPAITIEITKTADANVIKTVEGVRKLLPDIRTWLPPSVKLSILNDRTTTIRASVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LVL V+ + +      + A  ++ L++  T+ ++  LG TL   S+  + 
Sbjct: 334 IQITLLITILLVLAVVTLFMRRMTPTIAAGVTVPLSLAGTVGVMWALGFTLDNFSLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I  ++ +  S   +  +G  +   T+    I+ ++  + L   G
Sbjct: 394 ICVGFVVDDAIVMIENIVTQHERGLSGIEAALVGARQIGFTVISITISLVVVFLPLTLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA+T+ ++ILIS   ++++   +    +        D         +    
Sbjct: 454 GVIGDLFYEFAMTLSVAILISGAISLTVTPMVCGHFMGRTPKVGRDSRIARGIDRLYRRS 513

Query: 539 AIQFMR------ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
              + R      A  W +  S   ++     L+       I  +    +      P D+S
Sbjct: 514 LDAYARSLDWALAHRWLMLASFALTVALTIFLYIKVPKAFIPEQDSGLIISHTMAPSDVS 573

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             R      ++     +N   +             +  + ++   +K           + 
Sbjct: 574 FSRMKRLEARVVAAILKNPAVDTVSSRIGVANGFSTANRGQMFIQLKPLSERTASAQEVV 633

Query: 653 NTEIVGPKISRELIRKGIVG 672
                       +     V 
Sbjct: 634 RQLQARLARIPGITTFMFVA 653



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 65/160 (40%), Gaps = 9/160 (5%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
               + +++    +    + A  T+ L +  T+G     G   +  ++ A+   +G+ V+
Sbjct: 345 VLAVVTLFM---RRMTPTIAAGVTVPLSLAGTVGVMWALGFTLDNFSLLALTICVGFVVD 401

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GS 792
           D +V+ + +   +  +   +S  +       +     +  +++  +  LP+ + G   G 
Sbjct: 402 DAIVMIENI---VTQHERGLSGIEAALVGARQIGFTVISITISLVVVFLPLTLMGGVIGD 458

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   FA+ ++  I+++ + S+ +   +         K  R
Sbjct: 459 LFYEFAMTLSVAILISGAISLTVTPMVCGHFMGRTPKVGR 498


>gi|330838605|ref|YP_004413185.1| protein-export membrane protein SecD [Selenomonas sputigena ATCC
           35185]
 gi|329746369|gb|AEB99725.1| protein-export membrane protein SecD [Selenomonas sputigena ATCC
           35185]
          Length = 414

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 143/383 (37%), Positives = 231/383 (60%), Gaps = 27/383 (7%)

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  L       + +        QV   A+++ ++I+ +R++++G++E  IQR G  RI+I
Sbjct: 32  RQGLDLQGGTHVVLEAVDTPEAQVNDDAMQRVVKIMEKRVNELGLTEPLIQRQGERRIII 91

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +LPG +DP    + +G TA + F                                  ++G
Sbjct: 92  ELPGIKDPDSAIKTIGKTAMLEFKDED--------------------------GNTVMTG 125

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             L     +   + ++ VV++ F + GA++F ++T  N+G+ +A++LDG VLT P + + 
Sbjct: 126 TDLKN-AQDARNQQNQYVVNLEFSDEGAKKFADLTTKNVGRRIAILLDGEVLTNPNVREP 184

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           I  G+A+I+G  + E A  +A +LR+G+LP+K+NI+E R VG  LG DS  K   A V G
Sbjct: 185 ITGGRAEITGQESQEEAHRIAMLLRSGALPVKVNIIETRTVGPTLGQDSKDKSEFAFVIG 244

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           +  +++FMI+ Y   GL+AD S+   VIL L LL +L ATLTLP +AGI+L IG+AVD+N
Sbjct: 245 ISAVLVFMILFYRLSGLIADLSLMAYVILLLFLLKMLDATLTLPGVAGIILSIGMAVDAN 304

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
           +L+ E  +EE R  +++  S++ GF RA++TIFDSNIT +IA +VLFFFG G ++GFAIT
Sbjct: 305 VLIFEHFKEEFRLGKTLRLSMEAGFKRAFTTIFDSNITTIIAALVLFFFGTGTIKGFAIT 364

Query: 492 MGLSILISMFTAISIVRAMMIFI 514
           +GL +++SM TAI++ + M+  +
Sbjct: 365 LGLGVVLSMLTAITLTQYMLKLL 387



 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 34/199 (17%), Positives = 82/199 (41%), Gaps = 4/199 (2%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G    +      +  +   +     I  T  VGP + ++   K     +I   A+L+++
Sbjct: 193 TGQESQEEAHRIAMLLRSGALPVKVNIIETRTVGPTLGQDSKDKSEFAFVIGISAVLVFM 252

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++    L A  +L+  +   L    +      L  VA ++  IG +V+  V++++  
Sbjct: 253 ILFYRLS-GLIADLSLMAYVILLLFLLKMLDATLTLPGVAGIILSIGMAVDANVLIFEHF 311

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           ++  +L     + R  ++            +++   I+ L +  +G   I  FAI +  G
Sbjct: 312 KEEFRL---GKTLRLSMEAGFKRAFTTIFDSNITTIIAALVLFFFGTGTIKGFAITLGLG 368

Query: 805 IVVAASSSIFIAAPILLFI 823
           +V++  ++I +   +L  +
Sbjct: 369 VVLSMLTAITLTQYMLKLL 387



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 23/129 (17%), Positives = 49/129 (37%), Gaps = 17/129 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           MR +  L ++  +   +G+  A  + L              N I  GLDL+GG+H+VLE 
Sbjct: 1   MRQDALLKLIAVIAVIVGVFFAFVSPL-------------ANSIRQGLDLQGGTHVVLEA 47

Query: 60  VDEDD--FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
           VD  +    +  +Q     +   + + G+    +++    +I +     +  ++    + 
Sbjct: 48  VDTPEAQVNDDAMQRVVKIMEKRVNELGLTEPLIQRQGERRIIIELPGIKDPDSAIKTIG 107

Query: 117 LFLQGVNSK 125
                    
Sbjct: 108 KTAMLEFKD 116


>gi|238028824|ref|YP_002913055.1| Acriflavin resistance protein [Burkholderia glumae BGR1]
 gi|237878018|gb|ACR30351.1| Acriflavin resistance protein [Burkholderia glumae BGR1]
          Length = 1081

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 61/525 (11%), Positives = 148/525 (28%), Gaps = 36/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I   G L A      ++  D FP       IS+  +  G       +  
Sbjct: 11  RPYTFIVLALVILLAGPLAAF-----RTPTDIFPDIRIP-VISVVWNYAG-------LQP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           D+     +  Y   L + +           +    + + F  S        +VT   Q V
Sbjct: 58  DEMSGRIITYYERALGTTVNDIQHIESQSYRSFGIVKIFFQPSVDIRTATAQVTSISQTV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++      + ++      + +    +E           Q+        
Sbjct: 118 LKQMPPGTTPPQILNYNASTVPVLQIALTSNTLDEQKLE--DYAENFIRPQLLSVPGVAI 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++  + DP  L+    +   ++      N         +     +      
Sbjct: 176 PTPYGGKAREVQIDLDPQALQAKGLSAQDVAHALAQQNQIIPAGTEKIGRFEYNIKLNNS 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                 ++                     +    +G          ++        +   
Sbjct: 236 PRALGTLNA--------------------LPIKSVGGTTIAIRDVAHVRDGFPPQSNIVR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                S    I        ++     P    ++         G+ S  
Sbjct: 276 VDGHRAVLMSILKNGSASTLDIIAGVKARLPLIEQTLPPGLKLVMMGDQSAFVKGAVSGV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A L  +++ + +   +  L+   SI L V+  +ALL+  G TL + ++ G+ L
Sbjct: 336 AREGVIAAALTSLMILLFLGSWRSTLIIAASIPLAVLSAIALLAATGETLNVMTLGGLAL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E +     + +    ++  G  +       + +   I  V +    G
Sbjct: 396 AVGILVDDATVTIENVNWHLEQGKDTRSAILDGARQIVMPALVALLCICIVFVPMLMLDG 455

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            + R   + M  +++ +M ++  + R  +  + +Y          
Sbjct: 456 IS-RFLFVPMAKAVIFAMVSSFVLSRTFVPMLAQYLLKPHASGGH 499



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 73/193 (37%), Gaps = 7/193 (3%)

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           +++ +   + L  + +           + R+G++   ++++ +L+++     W   L   
Sbjct: 308 IEQTLPPGLKLVMMGDQSAFVKGAVSGVAREGVIAAALTSLMILLFLG---SWRSTLIIA 364

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ L +   +   A  G   N+  +  +   +G  V+D  V  + +             
Sbjct: 365 ASIPLAVLSAIALLAATGETLNVMTLGGLALAVGILVDDATVTIENVN---WHLEQGKDT 421

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           R  I     + +  ++   +   I  +PM +  G     F +PMA  ++ A  SS  ++ 
Sbjct: 422 RSAILDGARQIVMPALVALLCICIVFVPMLMLDGISRFLF-VPMAKAVIFAMVSSFVLSR 480

Query: 818 PILLFIYDWRAKN 830
             +  +  +  K 
Sbjct: 481 TFVPMLAQYLLKP 493



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 65/175 (37%), Gaps = 7/175 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
            +   +     ++G+  +   + + I + F  W  A   ++ L   +   +    +     
Sbjct: 892  QTMNDAFTGLLLGLAGAIALIYLLIVVNFHSWADAFVIVSALPAALAGIVWMLFVTHTPL 951

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++ A+   +  +G +  + ++V    R+  +L  T  +    ++          + T++A
Sbjct: 952  SVPALTGAILCMGVATANSILVVSFARE--RLAATGNALAAALEAGFTR-FRPVLMTALA 1008

Query: 779  AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I + PMA+    GG         +  G+  A  +++F    +   ++   A  
Sbjct: 1009 MIIGMAPMALGLGDGGEQNAPLGRAVIGGLACATLATLFFVPVVFSLVHRRDAPR 1063


>gi|126441520|ref|YP_001059558.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 668]
 gi|126221013|gb|ABN84519.1| putative RND transporter, hydrophobe/amphiphile efflux-1 (HAE1)
           family [Burkholderia pseudomallei 668]
          Length = 1048

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/590 (12%), Positives = 164/590 (27%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +       +      +F       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRRALSGLSGVNPKGVFNGTTRSY 229

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +      + +  + +G  +                                         
Sbjct: 230 TIYTNGQLTEPAQWNGAIVA--------------------YRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFFASVAASVFLYVGIPKGFFPQQ 559



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGERPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|312141446|ref|YP_004008782.1| integral membrane protein mmpl5 [Rhodococcus equi 103S]
 gi|311890785|emb|CBH50104.1| putative integral membrane protein MmpL5 [Rhodococcus equi 103S]
          Length = 894

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/516 (12%), Positives = 155/516 (30%), Gaps = 52/516 (10%)

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
             +       I    V ++LF +        +      L ++    ++ ++     + + 
Sbjct: 180 MANDLHRMEIIAIPAVAVLLFFVFGGVIAAALPLVVGGLTILGANGIVRVITHFTDVNAF 239

Query: 418 AGIVLGIG---LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
              V+ +    LA+D  + +  R REE         ++      A  T+  S     ++ 
Sbjct: 240 VASVVSLIGLGLAIDYGLFIVSRFREELGDGYDTRTAVRRSVMTAGRTVLFSATMIAVSL 299

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM---KSIDINPLSRF 531
             L  F  G ++  A     ++L++ FT+++++ A++  + R       K       +  
Sbjct: 300 GGLILFPQGFLKSVAYGAIATVLLAAFTSVTVLPAILSILGRRIDKFGLKRFGQIKSTEE 359

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ----------- 580
                   +     R        +     + ++   G+ +G   +  +            
Sbjct: 360 IENSIWGRLTRWVMRNPLKVTIPIVVGLLLLIIPMTGIKFGGINEDYLPPDNTTRVAQEQ 419

Query: 581 --------------LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                         L +   +   +  +             F      K+ +  L+    
Sbjct: 420 FDELFPGNRTEPVKLVIDGAQGTQVGQILKTASEAPGLVEKFTITGPAKDGVQVLKAGLV 479

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
           D       ++ ++           +  T  +       L+    + V    I   + +++
Sbjct: 480 DRNNSAETIDYLRSMPVPDGIQVLVGGTPAIEQDSISALLDNLPLMVASVLIVTTLLMFL 539

Query: 687 RF-KWYFALGAITTLILDITKTLGFFALFGI-------------EFNLTAVAAVLTLI-G 731
            F      + A+    L +  TLG      I                   +  ++ +I G
Sbjct: 540 AFGSIVLPIKAVLMSALGLGSTLGILTWIFIDGHGADALGFTPGPITSPVLVLIVAIIYG 599

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
            S++ +V +  RM +     +   S  + I      T GR +  +    I V     +  
Sbjct: 600 LSIDYEVFLLSRMVE---ARSQGASTTEAIRIGTAHT-GRIITAAALILIVVTGAFGFSE 655

Query: 791 GSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYD 825
             ++   A  M   +++      +F+   ++  + D
Sbjct: 656 LVMMKYIAYGMIAALIIDATLIRMFLVPAVMKLLGD 691


>gi|296126605|ref|YP_003633857.1| protein-export membrane protein SecD [Brachyspira murdochii DSM
           12563]
 gi|296018421|gb|ADG71658.1| protein-export membrane protein SecD [Brachyspira murdochii DSM
           12563]
          Length = 503

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 144/450 (32%), Positives = 248/450 (55%), Gaps = 29/450 (6%)

Query: 106 RFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL---SQNNIDQVISHAIEQ 162
              ++I     L  + VN  L++     +++    +E +  L   + +   +  + A+++
Sbjct: 54  EQIDDIQALKRLRSESVNMGLDLQGGIRIVLQADFEEYAARLDRNASSLTAEEKNDAMDR 113

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
            +  +R RIDQ G+SE  I++ G  R++++LPG +DP R++ ++ +   ++F+ V    +
Sbjct: 114 LISRLRGRIDQFGVSEVGIRKQGEDRVVVELPGARDPDRIKSVVLSQGALTFNLVDERAT 173

Query: 223 KKGFMFGVRFLRDSD-------------------------GNQYLVEDKVEISGIHLNGA 257
                  +     ++                         G   +V  +  + G  L  A
Sbjct: 174 AALTTNDMLMGVFTNMAKVPEYGKLLYFYSEKDDFGRRIRGAPVIVNKEPSLEGSSLVNA 233

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                    +  V+   +  GA +F  VT  NI + LA+VLD +V++AP IN  I  G+ 
Sbjct: 234 QVGGGQFG-EVTVEFELNNEGAEQFALVTAQNIDRMLAIVLDDKVISAPNINDEIRGGRG 292

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
            I+G FT+E A  LA +L+ G+LP+ ++IVEE  VG  +G+DS+  G  A++   +L+ +
Sbjct: 293 VITGRFTLEEAQDLARILKEGALPLNVSIVEEEVVGQSIGADSVKAGATALLMAAILVAV 352

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FMI +Y   G++A  ++ +NVIL +A+LS L  TLTLP IAG++L IG+AVD+N+++ ER
Sbjct: 353 FMIAVYRLSGVLATIAMIVNVILIIAVLSPLRFTLTLPGIAGLILTIGMAVDANVIIFER 412

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           I++E +   +V  ++  G+ RA++TIFDSNIT +I  ++L+ FG G V+GFAIT+   IL
Sbjct: 413 IKDELKVKSNVADAIISGYDRAFATIFDSNITTIIVALILWIFGSGPVQGFAITLFFGIL 472

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           I++FTA+ I R +   +IR K +K      
Sbjct: 473 INLFTAVFITRYIYEELIRTKMVKKAGFFF 502



 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 95/241 (39%), Gaps = 4/241 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +     + ++ + D      +             G    +         K   +    +
Sbjct: 261 TAQNIDRMLAIVLDDKVISAPNINDEIRGGRGVITGRFTLEEAQDLARILKEGALPLNVS 320

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I   E+VG  I  + ++ G   ++++AI + +++   ++    + A   +I+++   +  
Sbjct: 321 IVEEEVVGQSIGADSVKAGATALLMAAILVAVFMIAVYRLS-GVLATIAMIVNVILIIAV 379

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +       L  +A ++  IG +V+  V++++R++  +K+     +  D I    +    
Sbjct: 380 LSPLRFTLTLPGIAGLILTIGMAVDANVIIFERIKDELKV---KSNVADAIISGYDRAFA 436

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               +++   I  L + ++G   +  FAI + FGI++   +++FI   I   +   +   
Sbjct: 437 TIFDSNITTIIVALILWIFGSGPVQGFAITLFFGILINLFTAVFITRYIYEELIRTKMVK 496

Query: 831 A 831
            
Sbjct: 497 K 497


>gi|209885190|ref|YP_002289047.1| multidrug resistance protein MdtC [Oligotropha carboxidovorans OM5]
 gi|209873386|gb|ACI93182.1| multidrug resistance protein MdtC [Oligotropha carboxidovorans OM5]
          Length = 1035

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/567 (11%), Positives = 151/567 (26%), Gaps = 48/567 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G +           +   P+                  + +   
Sbjct: 9   RRPVGTTLLAIGLFLVGAVA-----YVNLPVASIPNVDFPM-------------IRISAS 50

Query: 62  EDDFVNGFLQMYSD-ELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +       L      +        S       I + FA  R  +  A  V  
Sbjct: 51  RPGADPSVMAATVAAPLERRLGEIAGVDQITSSSSLGSTSIQMQFAIGRSIDKAARDVQA 110

Query: 118 FLQGVNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            +    + L  D      +         + +       +   AI            +I  
Sbjct: 111 AINASLADLPSDLPSLPNVRKANTAATPVFIIALTSKTMSPSAI--YDIADTVIAQRIAQ 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +   S      +  + +P  L     +T ++    V  N      MF      ++
Sbjct: 169 VPGVGEVTVSGADQPAIRVQMNPMLLANAGISTEQVRAAIVGANAFGPIGMFDGGRQGET 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
            G    +    E+  I +                                   +      
Sbjct: 229 LGLNPQMRTAAELKNIVIK--------------------ASNGNFIRLSDVATVIDATRS 268

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                            + ++  +   T++    L   L+                G   
Sbjct: 269 SRSIAWFNKQPAVLLQITKQSDANVIDTVDRIKDLLPQLKQWIPAGVEVSTLTDRTGTIR 328

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    + T    A LV+ V+F+ +  G   + A  S+ L +  T A +   G ++   S
Sbjct: 329 ASVEDMQWTLGATALLVMAVVFIFLRRGVPTIAAGVSVPLALAGTCAGMWAAGFSIDNLS 388

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  + + IG  VD  I++ E +     +  +   +   G  +   T+   +++ + A   
Sbjct: 389 LMALAISIGFVVDDAIVMIENMHRNLEQGMTPARAALEGAKQIGFTVLSISLSLIAAFTP 448

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F     G  +R F++T+  +I +S   ++++   +    I++   +  +        +
Sbjct: 449 LIFMEGIVGRLLREFSLTLVFAIAVSTVVSLTVTPMICAQYIKHAHNEKENRFDRLVEGV 508

Query: 534 IPDCIAIQFMRARFWGVGISILFSICS 560
           +   +       R       +   +  
Sbjct: 509 LSRVLRFYERSLRAVLKMPILTILVFF 535



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 76/213 (35%), Gaps = 10/213 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI---RKGI 670
            K   V LQ            ++ +K  + ++                +  +        
Sbjct: 276 NKQPAVLLQITKQSDANVIDTVDRIKDLLPQLKQWIPAGVEVSTLTDRTGTIRASVEDMQ 335

Query: 671 VGVIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +  +A+ ++  ++I  +     + A  ++ L +  T       G   +  ++ A+   
Sbjct: 336 WTLGATALLVMAVVFIFLRRGVPTIAAGVSVPLALAGTCAGMWAAGFSIDNLSLMALAIS 395

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG+ V+D +V+ + M +N+      ++      +   +     +  S++   +  P+   
Sbjct: 396 IGFVVDDAIVMIENMHRNL---EQGMTPARAALEGAKQIGFTVLSISLSLIAAFTPLIFM 452

Query: 790 GGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
            G V   +  F++ + F I V+   S+ +   I
Sbjct: 453 EGIVGRLLREFSLTLVFAIAVSTVVSLTVTPMI 485



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 84/213 (39%), Gaps = 6/213 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              + +     V      E +++ + E+     I+ T       S++   +  + ++ + +
Sbjct: 808  TTISFNTLPDVPLETATENIRRAVAELHMPEGIRGTFEGNAADSQKAASRQPLLILGALV 867

Query: 679  AMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            A+ I + + ++     L  I+TL       L    + G+   + A   ++ LIG    + 
Sbjct: 868  AVYIVLGVLYESLAHPLTIISTLPPAGLGALLALLVTGLPLTVIAFVGIILLIGIVKKNG 927

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++ D   +        ++  + I  +        + T+MAA ++ +P+ +    G  + 
Sbjct: 928  IMIVDFALE--GERQHGMNSEEAIFAASLARFRPIIMTTMAALLAAVPLVLATGPGTELR 985

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                + +  G++V+   +++    I L I   R
Sbjct: 986  RPLGVTIIGGLIVSQILTLYTTPVIYLLIDRAR 1018


>gi|269966130|ref|ZP_06180220.1| cation efflux system protein CusA [Vibrio alginolyticus 40B]
 gi|269829277|gb|EEZ83521.1| cation efflux system protein CusA [Vibrio alginolyticus 40B]
          Length = 1059

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 70/591 (11%), Positives = 164/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N +LV++ ++   +G L ++ N    + +D  P       I                  
Sbjct: 11  SNRFLVLVATLALVLGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   +   +
Sbjct: 118 APKLPPNAKPTLGPDATGVGWVYSYV-LQDKTGKHDLADLRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   E G         D    P        +
Sbjct: 237 LTSIEDIK------------------SLPLKVTEKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I       A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIAKVKDKLADLQRSLPEGVEIVATYDRSTLIDSAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLIDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLPEHKNPVNRGLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++     + I++     +       G  +      G  + +   
Sbjct: 519 RPLLNTSLKYPKTMIVIALGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTT 569



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 80/291 (27%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  +                   +    L    +V + I
Sbjct: 816  WVFVDIDGRDLGSYVVEAQQVVADQLELPAGYSLAWSGQYEYMERAKDRL--SVVVPITI 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYS 733
            + I +L+Y   R         I  L L +    G     +    F++      + L G +
Sbjct: 874  AIIMLLLYFSFR---RVGEVMIIMLTLPLAMVGGLWLMHILNYNFSIAVGVGFIALAGVA 930

Query: 734  VNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++   +           +  +    +    D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHYKKLDAEESQQKLETKDLTDAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+      G  V+   A PM  G+  A   ++ +   I         + +
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQRELRQS 1041



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++     +   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVIAKVKDKLADLQRSLPEGVEIVATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDSAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLIDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|212691022|ref|ZP_03299150.1| hypothetical protein BACDOR_00512 [Bacteroides dorei DSM 17855]
 gi|237726669|ref|ZP_04557150.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|294776922|ref|ZP_06742383.1| RND transporter, HAE1/HME family, permease protein [Bacteroides
           vulgatus PC510]
 gi|212666254|gb|EEB26826.1| hypothetical protein BACDOR_00512 [Bacteroides dorei DSM 17855]
 gi|229435195|gb|EEO45272.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|294449170|gb|EFG17709.1| RND transporter, HAE1/HME family, permease protein [Bacteroides
           vulgatus PC510]
          Length = 1026

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 68/688 (9%), Positives = 186/688 (27%), Gaps = 54/688 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    +++ ++    +GL+           +   P                   + ++V
Sbjct: 6   LQRPIAVLMAFTACFIVGLVT-----YFSLPVSLLPDIAIP-------------QITIQV 47

Query: 61  DEDDFVNGFLQM-YSDELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
             ++     L+      +R     +          R     I L F      +    +V 
Sbjct: 48  TGENSSARELENTVVTPVRRQLLQVAGLREIKSETRDGAGVIRLEFDFGVNTDLAFIEVN 107

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ-------NNIDQVISHAIEQSMEIIRQ 169
             +    + L  +  +   +  +  +I ++             +      +E        
Sbjct: 108 EKIDAAMNSLPKEVTRPKAIKASATDIPVLYVNMTLKNDGAYQETDEQQFLELCELAENV 167

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
              +I           +      L    D  +L     +   +       N      +  
Sbjct: 168 VKRRIEQLPEVAMADITGVPGRLLQIVPDKDKLAMTGISVEDIENTLSANNVEPGSMLVR 227

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
             +   +     L+    ++  I++                       G R         
Sbjct: 228 DGYYEYNIRIATLLRTPEDVKNIYI---------------------RKGERIMQLKELCK 266

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +       +   V             ++  +    ++          A   P     V  
Sbjct: 267 VDIVSQKEMGRSVAGGKRAVTLAIIKQSDEN-MDVMKEKLKETTDYFASLYPDIEFSVSR 325

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   + S  +   ++    + IV  + +   +  L+   S+  ++++T        
Sbjct: 326 NQTELLDYTISNLQQNLSLGFLFIFIVAVLFLGDVRSPLIIGISMVTSIVITFFFFYFCH 385

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            +L + S++G++L +G+ +DS I+V E I +   +  S+  S  +G +   + +  S++T
Sbjct: 386 VSLNVISLSGLILAVGMMIDSAIIVTENISQYRERGYSLKRSCAVGTTEMITPMLSSSLT 445

Query: 470 ALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +   V L F     G      A ++ + ++IS  T I ++  + +   +        ++
Sbjct: 446 TIAVFVPLIFMSGIAGAIFMDQAFSITVGLMISYITGIMLLPVLYLLFYKVGIRSKGFLS 505

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L  + +   + +   W      L    ++  L      + +  K  +       
Sbjct: 506 RRFDNLLKNEWLESFYDKGIDWVFSHKKLCVAGTLATLPLCVFLFYVMEKERMPQIDQNE 565

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +    +         +       +        Y            E+   +     
Sbjct: 566 LVARIEWNENIHVDENNRRVDDLMKQVDDRVTEHAAYVGMQDYILNGGSELSSTEAELYF 625

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
                     +   + +E+  K  + V+
Sbjct: 626 KTEKPSGIYSLQELLEKEIREKYPLAVV 653



 Score = 97.8 bits (241), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S + M   +  +F+ +   L  +  + +D    L    +FG   NL +   ++   G
Sbjct: 865  LFVSLLLMYFILCAQFESFLQPLIVLMEIPIDTAFALLALWVFGHTLNLMSAIGIIVTCG 924

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VND ++  D + +   L    +   + I  +    L   + TS+    +++P+     
Sbjct: 925  IVVNDSILKMDAINE---LRKAGMPLVEAIHTAGRRRLRAIIMTSLTTVFAMVPLLFTSD 981

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G  +    +I M   +VV    S+FI   I  FIY    KN
Sbjct: 982  MGSEMQKPLSIAMIGSMVVGTLVSLFIIPLIYWFIYRKHDKN 1023



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/286 (8%), Positives = 86/286 (30%), Gaps = 7/286 (2%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V    +                    +    + +     +        ++ +   ++   
Sbjct: 219 VEPGSMLVRDGYYEYNIRIATLLRTPEDVKNIYIRKGERIMQLKELCKVDIVSQKEMGRS 278

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G++   + +  Q  +++   +            +      +      ++    I   
Sbjct: 279 VAGGKRAVTLAIIKQSDENMDVMKEKLKETTDYFASLYPDIEFSVSRNQTELLDYTISNL 338

Query: 670 IVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +  + + I  +         L    +++  I  T  FF    +  N+ +++ ++ 
Sbjct: 339 QQNLSLGFLFIFIVAVLFLGDVRSPLIIGISMVTSIVITFFFFYFCHVSLNVISLSGLIL 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  ++  ++V + +    +      S +        E +   + +S+      +P+  
Sbjct: 399 AVGMMIDSAIIVTENI---SQYRERGYSLKRSCAVGTTEMITPMLSSSLTTIAVFVPLIF 455

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G     F   A  +  G++++  + I +   + L  Y    ++ 
Sbjct: 456 MSGIAGAIFMDQAFSITVGLMISYITGIMLLPVLYLLFYKVGIRSK 501


>gi|218665832|ref|YP_002426817.1| heavy metal efflux pump, CzcA family [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|218518045|gb|ACK78631.1| heavy metal efflux pump, CzcA family [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 1037

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/675 (10%), Positives = 184/675 (27%), Gaps = 40/675 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N   ++I   ++   G L  +        L+  P   P   I                
Sbjct: 11  MENRLLVMIAVLVLTVAGTLAVI-----NIPLEAIPDISPTQVI---------IKTSYPG 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    +     +              + + + F          + V  +L 
Sbjct: 57  QAPQIVQDQVTYPLETTLQEVPGAQAVRGYSMFGDSYVYVLFKGGTSIYQARNLVLQYLS 116

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V SKL       L   ++  +               +  + +         ++      
Sbjct: 117 QVQSKLPPGITPALGPNSSGVDWIFEY-ALTDPSGTLNLAQLTTLQNWFLKYELQGISGV 175

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ +     +P +L     T  ++       N    G +  +          
Sbjct: 176 AEVATVGGMVQEYQVVVNPQKLLAYNLTLPEVEAAIRAANGETSGSVVDMGEASYIVRTS 235

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     +    L               V +                    P       
Sbjct: 236 GYIHSLKALEDASLGVRNGVPITLREVARVQL-------------------GPQLPNGIA 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   I       +    I         ++         +           S  
Sbjct: 277 ELNGHGQVVGGIVMMNQGGNAYALIHQIERKLKEIQPSLPKGVKVVTTYSQAPLIQRSIH 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
              G     +  V ++  + +L  +  LVA  ++ L ++    ++  LG    + S+ GI
Sbjct: 337 TLTGKLLEESLAVALISLLFLLRARSALVALIALPLGILAAFFIMWSLGIPANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREE--NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + IG+ +D+ +++ E + +   +      + +           +F S I   ++ + +F
Sbjct: 397 AIAIGVMMDAPVVMIENMHKHLEHNPGVDPWAAAIAAAEEVGPALFFSLIIIAVSFLPVF 456

Query: 479 FFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
             GG   +     A T   S+  +   ++++V  +M + IR + +             + 
Sbjct: 457 ALGGEEGKLFAPLAFTKTFSVAAAAMLSVTLVPILMAWFIRGRILPESKNPLNRVLAFLY 516

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    +RA +  + +++L +          G  +      G  L +   +   +S+ +
Sbjct: 517 RPVIHGVLRAPWIILVLALLLTATLYYPWNRLGSEFMPPLNEGTLLYMPVTQDPAVSIGQ 576

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +     Q   I     + E  F    + Q     +   + + V   +             
Sbjct: 577 AAALLQQTDRILKTFPEVETVFGEAGRAQTATDQSPLSMFDTVVN-LKNPDQWPAGMTMH 635

Query: 656 IVGPKISRELIRKGI 670
            +  K+++ L   G+
Sbjct: 636 KLQSKMNKALQVPGL 650



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 4/155 (2%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S    LI +    +   AL A+  L L I          GI  N+ ++  +   IG  ++
Sbjct: 346 SLAVALISLLFLLRARSALVALIALPLGILAAFFIMWSLGIPANIMSLGGIAIAIGVMMD 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             VV+ + M K++  +   +        +  E      ++ +   +S LP+   GG    
Sbjct: 406 APVVMIENMHKHL-EHNPGVDPWAAAIAAAEEVGPALFFSLIIIAVSFLPVFALGGEEGK 464

Query: 796 SF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            F   A    F +  AA  S+ +   ++ +    R
Sbjct: 465 LFAPLAFTKTFSVAAAAMLSVTLVPILMAWFIRGR 499



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 9/147 (6%)

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-----DRM 744
            W      + TL L +          G + ++      + L G +    VV+        +
Sbjct: 887  WVEVTIILLTLPLSLVGGFWLVYWLGYKLSVAVAVGFIALAGVAAEFGVVMLLYLDQALI 946

Query: 745  RKNMKLYTTSI-SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
            R+  +    S    +  + +     L     T       +LP+      G  V+   A P
Sbjct: 947  RRQARDTLQSWHDLQLAVIEGTMLRLRPLAMTLTLVVGGLLPIMFSHGAGADVMKRIAAP 1006

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWR 827
            M  G+  AA  ++ +   +       R
Sbjct: 1007 MVGGMFSAALLALLVIPALYALWQKRR 1033


>gi|18310924|ref|NP_562858.1| preprotein translocase subunit SecD [Clostridium perfringens str.
           13]
 gi|18145606|dbj|BAB81648.1| protein-export membrane protein [Clostridium perfringens str. 13]
          Length = 419

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E VG ++    +   +    I    + +++ + ++      A  +L + I   L  FA
Sbjct: 231 SVETVGAQLGANALPNALKAGAIGVAIIFLFMILYYRVP-GFIACMSLSVYILLVLYIFA 289

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G+   L  +AA L  +G +V+  V++++R+++ +       S    +    +  L   
Sbjct: 290 LVGVTLTLPGIAAFLLTVGMAVDANVLIFERIKEEL---GNGRSITSAMKIGFSNALRSI 346

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           + +++   I+ L +  +G   +  FA+ +  GIV++  ++I +    +  
Sbjct: 347 MDSNITTLIAGLVLYFFGSGPVKGFALTLLIGIVISMFTAIIMTRFFMNL 396



 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 130/381 (34%), Positives = 216/381 (56%), Gaps = 26/381 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +   D V    +  + E++  R++++G+SE+ +   G++RI I +PG+ D   +   
Sbjct: 55  VLMEIQSDDVTVDQLNTTKELLSLRVNKVGVSETVVTTEGNNRIRIDIPGQYDSKTIVDS 114

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           L  T +++F                             ED V ++G  +  ++   DP+T
Sbjct: 115 LQKTGELTF--------------------------VGPEDDVILTGKDVEKSSVYIDPQT 148

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            KPV+ +  +E G ++F E T+   G+ +A+ +D   LT PV+N  I +G+A ISGN ++
Sbjct: 149 GKPVIKLELNEEGKQKFAEATKKYKGQKIAIKMDNETLTDPVVNDIISNGEAIISGNRSM 208

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  ++ ++ AG+LP+ +  V    VGA LG++++     A   G+ +I LFMI+ Y  
Sbjct: 209 EEAEKVSGIINAGALPVPVKAVSVETVGAQLGANALPNALKAGAIGVAIIFLFMILYYRV 268

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G +A  S+ + ++L L + +L+G TLTLP IA  +L +G+AVD+N+L+ ERI+EE    
Sbjct: 269 PGFIACMSLSVYILLVLYIFALVGVTLTLPGIAAFLLTVGMAVDANVLIFERIKEELGNG 328

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  ++ +GFS A  +I DSNIT LIA +VL+FFG G V+GFA+T+ + I+ISMFTAI 
Sbjct: 329 RSITSAMKIGFSNALRSIMDSNITTLIAGLVLYFFGSGPVKGFALTLLIGIVISMFTAII 388

Query: 506 IVRAMMIFIIRYKKMKSIDIN 526
           + R  M        +    + 
Sbjct: 389 MTRFFMNLGFNMGILNKPSMF 409



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 2/142 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +     +   I    +            L  +        I+ GLDL+GG  +++E+
Sbjct: 1   MK-SKLGSFILFFISIAVISFLALAGFKGFTLGDYQFKTFNEVITKGLDLQGGVSVLMEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFL 119
             DD     L    + L   + K G+    +     N+I +        + I D +    
Sbjct: 60  QSDDVTVDQLNTTKELLSLRVNKVGVSETVVTTEGNNRIRIDIPGQYDSKTIVDSLQKTG 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEK 141
           +        D            
Sbjct: 120 ELTFVGPEDDVILTGKDVEKSS 141


>gi|152996072|ref|YP_001340907.1| acriflavin resistance protein [Marinomonas sp. MWYL1]
 gi|150836996|gb|ABR70972.1| acriflavin resistance protein [Marinomonas sp. MWYL1]
          Length = 1069

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/528 (12%), Positives = 152/528 (28%), Gaps = 44/528 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM-PKNRISLGLDLRGGSHLVLEVD 61
            +  +++ + +I  +G +        +   +  P    P   +S+ LD          + 
Sbjct: 11  RSRTVMMFFVLILIMGTVS-----YIEIAKESDPDITIPMAYVSVSLD---------GIS 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            +D  +  L    ++    L+       +  +    I L F      +         +  
Sbjct: 57  PEDA-DSLLVHPLEKELKGLEGLKELKSTASEGHASIMLEFESGVNIDQAISDTKDKVDR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  D  +  +         ++    + +   +          +   D I   +  +
Sbjct: 116 AKSELPDDADEPTVTEINLSTFPVLRVNLSGNVSFATLSR----TAKSLQDSIEAIDGVL 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   S     Q      P +L     + + ++                        GN  
Sbjct: 172 EAKISGDRDQQAQIIIRPEQLESYNLSLSDVAN--------------------FVSGNNR 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           LV      +G            KT + ++++     G +                     
Sbjct: 212 LVAAGNLDTGAGRFSLKVPGLLKTKEDILNLPIKADGDQVVLLGDIATGELTFEDPTSYA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +          S +  ++   TIE    +               +          S + 
Sbjct: 272 RVEGKRSITLAVSKRVGVNIIETIEAIKAVVKNESEQWPNGVEYNLTGDKSTDIETSLND 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LV+IV+   +       +   +I    +  + +L L G T+ +  +  ++
Sbjct: 332 LFNNVLAATLLVMIVIVWALGVR-SAFLVGLAIPGAFLSGILILDLQGYTINMVVLFALI 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+V E    +  +  S   +      R    I  S  T L   + L F+ 
Sbjct: 391 LSVGMLVDGAIVVTEYADRKLAEGASKRQAYSEAAKRMAWPITASTATTLAVFMPLLFWP 450

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
              G  +R   IT+  ++  S+  A+ ++  +   I +        ++
Sbjct: 451 DIVGEFMRFMPITIIATLASSLVMALIVLPTIGSIIGKKGAYTEKTMH 498



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 88/247 (35%), Gaps = 31/247 (12%)

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                 +    +++     D +    V++ +K K+        +        +  ++ +  
Sbjct: 798  VINRTDGKKTIKIDADVKDGLVVDEVIKAIKVKLDAAGIDKAVSYEFRGNTEDQQKSMIF 857

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL-------FGIEFNLT 721
             I    ++   M I +  +F  +F    I + +  I  T+G F         FGI  +  
Sbjct: 858  LIKAFGVAFFIMAIILVTQFNNFFQCLLILSAV--IFSTMGVFIGLMVKGQPFGIVMSGV 915

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
             V A+    G  VN+ +V+ D       L    +  R+   ++  + L   + T++   +
Sbjct: 916  GVIALA---GIVVNNNIVLIDTFN---GLRKQGMMVREAAIRTGVQRLRPVMLTTITTIL 969

Query: 782  SVLPMAV-WGGSVIG--------------SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             ++PM   +   ++                 +  +A G+  A   ++ I  P LL +   
Sbjct: 970  GLVPMVFQFNIDLVHQSFSIGAPSAQWWTQLSTAIAGGLTFATPLTL-ILTPCLLVLGYR 1028

Query: 827  RAKNARI 833
            R +  ++
Sbjct: 1029 RKERKQL 1035



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 68/207 (32%), Gaps = 8/207 (3%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
                A   V++   ++    V  +   +          +L    +   ++  I ++  +
Sbjct: 292 IETIEAIKAVVKNESEQWPNGVEYNLTGDKSTDIETSLNDLFNNVLAATLLVMIVIVWAL 351

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            +R  +   L      +  I        L G   N+  + A++  +G  V+  +VV +  
Sbjct: 352 GVRSAFLVGLAIPGAFLSGILI----LDLQGYTINMVVLFALILSVGMLVDGAIVVTE-- 405

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
               +      S R    ++          ++       +P+  W   ++G F   M   
Sbjct: 406 -YADRKLAEGASKRQAYSEAAKRMAWPITASTATTLAVFMPLLFWP-DIVGEFMRFMPIT 463

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           I+   +SS+ +A  +L  I     K  
Sbjct: 464 IIATLASSLVMALIVLPTIGSIIGKKG 490



 Score = 42.4 bits (97), Expect = 0.37,   Method: Composition-based stats.
 Identities = 52/547 (9%), Positives = 145/547 (26%), Gaps = 65/547 (11%)

Query: 3    NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               W++ L++++  + +  +   F     ++ FPS  P++     LD+R    L LE   
Sbjct: 528  YPIWVL-LFTIVLLLSIFASYGKF--GKGIEFFPSIEPESA---NLDIRARGDLSLE--- 578

Query: 63   DDFVNGFLQMYSDELRSFLKKEG--IGVFSMRQIQN-------KITLSFADSRFKENIAD 113
                   L    ++           +         N        I++ F +   +     
Sbjct: 579  ---EKDELVRLVEQQVIGNPSLKSVVSTTYATPGNNAAPDSIGSISMEFIEWYKRAPAGV 635

Query: 114  KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
             +   ++    ++        +    E+      +   +    ++    ++         
Sbjct: 636  IL-DRIRERTKQIPG----IEISAEKEQGGPQSGADIQLQLSSNYTEALNLAADEISKQL 690

Query: 174  IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF--HKVLPNNSKKGFMFGVR 231
            +   E            I+   + +     +       +      V    +   F+    
Sbjct: 691  LLRDEIITVSDDRSLAGIEWRIDINREEASRYNVDVNSLGNVIKLVTTGITLSDFLPEGA 750

Query: 232  FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
              +     +Y V  +       L+      +  +      I       +     T     
Sbjct: 751  DDKIDIVLRYPVNQRSL---DQLDQLQVPTNQGSIPASNFIHRYAAPKQGVINRTDGKKT 807

Query: 292  KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
              +   +   ++   VI        A                                  
Sbjct: 808  IKIDADVKDGLVVDEVIKAIKVKLDAAGIDKAVS-------------------YEFRGNT 848

Query: 352  VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                     + K        + +I++     + +  L+    IF  + + + L+      
Sbjct: 849  EDQQKSMIFLIKAFGVAFFIMAIILVTQFNNFFQCLLILSAVIFSTMGVFIGLMVKGQPF 908

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
              + S  G++   G+ V++NI++ +      ++   V  +      +    +  + IT +
Sbjct: 909  GIVMSGVGVIALAGIVVNNNIVLIDTFNGLRKQGMMVREAAIRTGVQRLRPVMLTTITTI 968

Query: 472  IATVVL------------FFFGGGAVRGFAITMGLSILISMFT---AISIVRAMMIFIIR 516
            +  V +            F  G  + + +            F     + +   +++   R
Sbjct: 969  LGLVPMVFQFNIDLVHQSFSIGAPSAQWWTQLSTAIAGGLTFATPLTLILTPCLLVLGYR 1028

Query: 517  YKKMKSI 523
             K+ K +
Sbjct: 1029 RKERKQL 1035


>gi|110803886|ref|YP_699218.1| preprotein translocase subunit SecD [Clostridium perfringens SM101]
 gi|110684387|gb|ABG87757.1| protein-export membrane protein SecD [Clostridium perfringens
           SM101]
          Length = 419

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E VG ++    +   +    I    + +++ + ++      A  +L + I   L  FA
Sbjct: 231 SVETVGAQLGANALPNALKAGAIGVAIIFLFMILYYRVP-GFIACMSLSVYILLVLYIFA 289

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G+   L  +AA L  +G +V+  V++++R+++ +       S    +    +  L   
Sbjct: 290 LVGVTLTLPGIAAFLLTVGMAVDANVLIFERIKEEL---GNGRSITSAMKIGFSNALRSI 346

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           + +++   I+ L +  +G   +  FA+ +  GIV++  ++I +    +  
Sbjct: 347 MDSNITTLIAGLVLYFFGSGPVKGFALTLLIGIVISMFTAIIMTRFFMNL 396



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 216/381 (56%), Gaps = 26/381 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +   + V    +  + E++  R++++G+SE+ +   G++RI I +PG+ D   +   
Sbjct: 55  VLMEIQSNDVTVDQLNTTKELLSLRVNKVGVSETVVTTEGNNRIRIDIPGQYDSKTIVDS 114

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           L  T +++F                             ED V ++G  +  ++   DP+T
Sbjct: 115 LQKTGELTF--------------------------VGPEDDVILTGKDVEKSSVYIDPQT 148

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            KPV+ +  +E G ++F E T+   G+ +A+ +D   LT PV+N  I +G+A ISGN ++
Sbjct: 149 GKPVIKLELNEEGKQKFAEATKKYKGQKIAIKMDNETLTDPVVNDIISNGEAIISGNRSM 208

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  ++ ++ AG+LP+ +  V    VGA LG++++     A   G+ +I LFMI+ Y  
Sbjct: 209 EEAEKVSGIINAGALPVPVKAVSVETVGAQLGANALPNALKAGAIGVAIIFLFMILYYRV 268

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G +A  S+ + ++L L + +L+G TLTLP IA  +L +G+AVD+N+L+ ERI+EE    
Sbjct: 269 PGFIACMSLSVYILLVLYIFALVGVTLTLPGIAAFLLTVGMAVDANVLIFERIKEELGNG 328

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  ++ +GFS A  +I DSNIT LIA +VL+FFG G V+GFA+T+ + I+ISMFTAI 
Sbjct: 329 RSITSAMKIGFSNALRSIMDSNITTLIAGLVLYFFGSGPVKGFALTLLIGIVISMFTAII 388

Query: 506 IVRAMMIFIIRYKKMKSIDIN 526
           + R  M        +    + 
Sbjct: 389 MTRFFMNLGFNMGILNKPSMF 409



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 2/142 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +     +   I    +            L  +        I+ GLDL+GG  +++E+
Sbjct: 1   MK-SKLGSFILFFISIAVISFLALAGFKGFTLGDYQFKTFNEVITKGLDLQGGVSVLMEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFL 119
             +D     L    + L   + K G+    +     N+I +        + I D +    
Sbjct: 60  QSNDVTVDQLNTTKELLSLRVNKVGVSETVVTTEGNNRIRIDIPGQYDSKTIVDSLQKTG 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEK 141
           +        D            
Sbjct: 120 ELTFVGPEDDVILTGKDVEKSS 141


>gi|330820664|ref|YP_004349526.1| cation efflux transporter [Burkholderia gladioli BSR3]
 gi|327372659|gb|AEA64014.1| cation efflux transporter [Burkholderia gladioli BSR3]
          Length = 1072

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/523 (14%), Positives = 156/523 (29%), Gaps = 38/523 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L  +I  IG L AL     ++  D FP+                       
Sbjct: 9   LRRPYTFVVLAILILIIGPLAAL-----RTPTDIFPNIRIPVI---------AVIWQYTG 54

Query: 61  DEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              D + G +    +  L + +                I + F           +VT   
Sbjct: 55  LSPDQMAGRISSPFERTLTTTVNDVEHIEAQSITGFGVIKIFFQPGVDINTANAQVTAVS 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q +  +L       L++      + I+    +   +       +   +      +     
Sbjct: 115 QTLLRQLPPGTTPPLILNYNASTVPIIQLALSGKGLSEQ--NLADLGLNTLRPALVTVPG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       Q+  + DP+ L+    +   ++                        G 
Sbjct: 173 AAIPFPFGGKTRQVQLDVDPAALQARGLSAQDVANALA--------------------GQ 212

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             L     E  G +      N  P   + + ++    +     +     N+    A   +
Sbjct: 213 NLLTPIGTEKIGDYEYTLNLNDAPGDIRELANLPVKAVNGTTIYMRDIANVHDGSAPQTN 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +                S    I          +AG                   + 
Sbjct: 273 IVHVDGNRSVLITVLKNGAASTLAIISGIKQHVEQGKAGWPQNLQIAPIGDQSLFVTAAI 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S       I A L  +++ + +   +  L+   SI L V+ ++  LS LG TL + ++ G
Sbjct: 333 SGVAREGVIAAVLTSLMILLFLGSWRSTLIIATSIPLAVLGSIITLSALGETLNIMTLGG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   +  E I     + + V  ++  G ++  +  F S +   I  V +FF
Sbjct: 393 LALAVGILVDDATVTIENINWHLEQGKQVEPAILDGAAQIVTPAFVSLLCICIVFVPMFF 452

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             G   R   + M  +++ +M ++  + R ++  + +Y     
Sbjct: 453 LQG-IARFLFVPMAEAVMFAMISSFILSRTLVPTMAKYLLKPH 494



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 64/162 (39%), Gaps = 7/162 (4%)

Query: 669  GIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             + G++ + + + + I + F  W      +T L   I   +          ++ A+   +
Sbjct: 896  MLFGLLGAVVLIYLLIVVNFQSWSDPFVIVTALPAAIAGIIWMLFATHTTMSVPALTGAI 955

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              +G +  + ++V    R+++  +      R  I+          + T+++  I + PMA
Sbjct: 956  MCMGVATANSILVVSFCRESLAEH--GDPLRAAIEAGFTR-FRPVLMTALSMVIGMAPMA 1012

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +    GG         +  G++ A ++++F+   +   I+  
Sbjct: 1013 LGLGEGGEQNAPLGRAVIGGLMFATAATLFLVPAVFSMIHAR 1054



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 76/241 (31%), Gaps = 8/241 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R                  + N  V +      + +   ++  +K+ + +         
Sbjct: 257 MRDIANVHDGSAPQTNIVHVDGNRSVLITVLKNGAASTLAIISGIKQHVEQGKAGWPQNL 316

Query: 654 TEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                   S  +          GVI + +  L+ +     W   L   T++ L +  ++ 
Sbjct: 317 QIAPIGDQSLFVTAAISGVAREGVIAAVLTSLMILLFLGSWRSTLIIATSIPLAVLGSII 376

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             +  G   N+  +  +   +G  V+D  V  + +                I     + +
Sbjct: 377 TLSALGETLNIMTLGGLALAVGILVDDATVTIENIN---WHLEQGKQVEPAILDGAAQIV 433

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +  + +   I  +PM    G     F +PMA  ++ A  SS  ++  ++  +  +  K
Sbjct: 434 TPAFVSLLCICIVFVPMFFLQGIARFLF-VPMAEAVMFAMISSFILSRTLVPTMAKYLLK 492

Query: 830 N 830
            
Sbjct: 493 P 493


>gi|302059598|ref|ZP_07251139.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. tomato K40]
          Length = 442

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 51/469 (10%), Positives = 125/469 (26%), Gaps = 35/469 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   I  +G +           +   P+      +             L   
Sbjct: 9   RRPVATVLLSLAIMLLGAVS-----FRLLPVAPLPNMDFPVIV---------VSASLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        +  Q   +I L F  +R     A +V   +  
Sbjct: 55  SPEVMASTVATPLERSLGSIAGVNTMTSNSSQGSTRIILQFDLNRDINGAAREVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +            + ++   ++   +    +            +       
Sbjct: 115 SRNLLPSGMRSMPTYKKVNPSQAPIMV-LSMTSTVLEKGQLYDLASTILSQSLSQVSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L Q   +   +       N  +                  
Sbjct: 174 EVQIGGSSLPAVRIELEPQMLSQYGVSLDDVRTAITNANVRRPKGFVEDDQHNWQVQAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E   +                       +                 +   +    +  
Sbjct: 234 QLESAKD--------------------YAPLIIRYQDGATLRLKDVAKVSDAVEDRYNSG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +A  +   T+         LRA         +          +   
Sbjct: 274 FYNNDRAVLLVVNRQAGANIIETVAQIKAQLPALRAVLPASVSLNIAMDRSPVIKATLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV++V+F+ +   +  L+   ++ ++++ T A++ L G +L   S+  ++
Sbjct: 334 AEMTLLIAVVLVVMVVFLFLGSFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALI 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           L  GL VD  I+V E I     + ++   +   G  +   T+    ++ 
Sbjct: 394 LATGLVVDDAIVVLENISRHIEEGETPMQAALKGAKQIGFTLISLTLSL 442



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L     + + +  T     LFG   N  ++ A++   G  V+D +VV + +    
Sbjct: 355 SFRASLIPTLAVPVSLVGTFAIMHLFGFSLNNLSLMALILATGLVVDDAIVVLENI---S 411

Query: 749 KLYTTSISFRDLIDKSINETL 769
           +      +      K   +  
Sbjct: 412 RHIEEGETPMQAALKGAKQIG 432


>gi|301057612|ref|ZP_07198692.1| heavy metal efflux pump, CzcA family [delta proteobacterium NaphS2]
 gi|300448336|gb|EFK12021.1| heavy metal efflux pump, CzcA family [delta proteobacterium NaphS2]
          Length = 1020

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 82/620 (13%), Positives = 179/620 (28%), Gaps = 40/620 (6%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           ++  M+  IG +      L +  +D  P     +                E    + +  
Sbjct: 1   MVTLMMVIIGAVS-----LSRLQIDMLPDIEMPSLT---------IRTEYEGTSPEVMER 46

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    +E+   +        +  +  + + +SF      +  A  V   L+   ++L  
Sbjct: 47  LVTQIIEEIVGTVPGVEEITSTSSEGTSTVRVSFVWGTKIDAAAIDVQGMLEDEINELPE 106

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
           D  +  +         +V+   + +      +E +  I  Q   +        Q      
Sbjct: 107 DVVRPRVRKFDIASFPVVILGISSN---LDPVELTELIEVQIRYRFARIPGVAQVDTWGA 163

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
              ++  E DP R++ L  +   +                              +     
Sbjct: 164 FNREVRIELDPDRVKALGLSMDHVISAIKD--------------------ANLDLPTGKI 203

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
             G       A  +  +   +      +            ++      +     +     
Sbjct: 204 EQGRWEVTLRAPAEFTSLDQIRQTVIVKRDGAAVTLDQISDVNDTYEKLTRMTRVNGRQG 263

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            +     +A  +     +               I +             S      +   
Sbjct: 264 IRVAIRKQANANTVEVSKRVLAEIKAANEAFPQIHIVP-VINQGNFIERSIKNVARSVLY 322

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
             GL ++VL   +   +  +    SI ++++ T AL+   G TL L ++ G+ LG+G+ V
Sbjct: 323 GGGLAILVLLFFLRNLRSTVAISLSIPISIVATFALMYFAGFTLNLMTLGGLALGVGMMV 382

Query: 429 DSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALIATVVL-FFFGGGAVR 486
           DS+I+V E I   + +N ++   +   G       I  S IT L+  + L F  G   + 
Sbjct: 383 DSSIVVLENIFRRSYENSETPAVAAVTGAQEVGKAIVASTITTLVIFLPLVFVQGVTGIL 442

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
              +   +   +    A+S+    M+     K   ++     S    +     I F+   
Sbjct: 443 FKELAYVIIFSLICSLAVSLTLVPMLASRLLKSTFTVRKKSESWTQKLVAFSDIFFLGLD 502

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              +G+        +  +F   L  G        +G     P D   VR + +      +
Sbjct: 503 TAYLGLLKTVLRHRVLTIFVAALLLGGSLLLLPFIGSEFIPPSDEGEVRVSGKMKIGTRL 562

Query: 607 SFQNFDGEKNFLVRLQYQPG 626
              +    K   +     P 
Sbjct: 563 ELVDQQTRKMESIVYPAVPE 582



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 84/259 (32%), Gaps = 9/259 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              +       V L  +    ++ +      +    +   +   +    ++V  ++ +  
Sbjct: 226 QTVIVKRDGAAVTLDQISDVNDTYEKLTRMTRVNGRQGIRVAIRKQANANTVEVSKRVLA 285

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             K   E  P   I      G  I R +       +    +A+L+ ++        +   
Sbjct: 286 EIKAANEAFPQIHIVPVINQGNFIERSIKNVARSVLYGGGLAILVLLFFLRNLRSTVAIS 345

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ + I  T       G   NL  +  +   +G  V+  +VV + +    + Y  S + 
Sbjct: 346 LSIPISIVATFALMYFAGFTLNLMTLGGLALGVGMMVDSSIVVLENIF--RRSYENSETP 403

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSI- 813
                    E     V +++   +  LP+    G         A  + F ++ + + S+ 
Sbjct: 404 AVAAVTGAQEVGKAIVASTITTLVIFLPLVFVQGVTGILFKELAYVIIFSLICSLAVSLT 463

Query: 814 ---FIAAPILLFIYDWRAK 829
               +A+ +L   +  R K
Sbjct: 464 LVPMLASRLLKSTFTVRKK 482



 Score = 41.2 bits (94), Expect = 0.71,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 65/169 (38%), Gaps = 9/169 (5%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            + + I    +L+Y+ +          L  + ++ L     L    +     N+ +    +
Sbjct: 850  LAISIVLALVLVYMVLACQYESLRDPLVVMFSVPLAAVGVLVTLFVTKTTLNVQSYIGCI 909

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L G  VN+ V++ D   +  +L  T ++ R  + ++    L   + T++   + +LP+A
Sbjct: 910  MLGGIVVNNAVLLVD---QAGQLVRTGMTTRHALVEAGRRRLRPILMTTLTTILGLLPLA 966

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +    G       A  +  G+  +   ++ +   +    +  R +   +
Sbjct: 967  LGIGEGADAQAPLARAVVGGLAGSTLITLVLIPAVYSLFHPERKQKRDL 1015


>gi|119489527|ref|ZP_01622288.1| protein export protein SecD [Lyngbya sp. PCC 8106]
 gi|119454606|gb|EAW35753.1| protein export protein SecD [Lyngbya sp. PCC 8106]
          Length = 463

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 88/223 (39%), Gaps = 4/223 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   I   +      E           G   A+      V+ +   +     I     V
Sbjct: 221 LDDQLISYPTVPVDFAETGITGGSAVITGRFSAEQANDLAVQLRGGALPVPVEIVENRTV 280

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  + R+ I++ +       I +LI++ + ++    L A   LI+    TL  F L G+ 
Sbjct: 281 GATLGRDSIQRSLYAGGGGLILVLIFMVVYYRLP-GLIADVALIVYAILTLAIFDLLGVT 339

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R R+ ++      +    ++          +  ++
Sbjct: 340 LTLPGIAGFILSIGMAVDANVLIFERTREELRA---GKTLYRSVESGFFRAFSSILDGNL 396

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              I+ + +   G  ++  FA+ +  G+ V+  +++  +  ++
Sbjct: 397 TTGIACIALFWLGTGLVKGFALTLGLGVAVSMFTALTCSRTLM 439



 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 102/479 (21%), Positives = 178/479 (37%), Gaps = 65/479 (13%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMRQ 93
            +    + LGLDLRGGS L +++   +         +      + + +   G+    ++ 
Sbjct: 21  VLINIPMRLGLDLRGGSQLTIQLQTSEEVPIIDERVINAVQSVIENRVNGLGVSESVVQT 80

Query: 94  -IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
             Q++I +        E     +    Q    +        LL  T  K+      + + 
Sbjct: 81  IGQDQILVQLPGVNDPEQAERVLGGTAQLDFREQLPGTNDQLLAETQVKQQLEFQLEQDK 140

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
                 AIE+++  +      I                            +  +     +
Sbjct: 141 QDGDEAAIEKTLASVESNKQAI------------------------TGLYQPPILRGQDL 176

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
                 P                              +G         F  +       +
Sbjct: 177 RDAFAEP------------------------------TGNDNWNIALRFSNEGGDKFAQL 206

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
           + +  G  R   +  D+       V      T      A+ +G+        +       
Sbjct: 207 TKNLAGTGRTIGIFLDDQLISYPTVPVDFAETGITGGSAVITGRFSAEQANDLAVQLRGG 266

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
           A+     +     +       +   S     G   +V   +++       Y   GL+AD 
Sbjct: 267 ALPVPVEIVENRTVGATLGRDSIQRSLYAGGGGLILVLIFMVV------YYRLPGLIADV 320

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSL 452
           ++ +  ILTLA+  LLG TLTLP IAG +L IG+AVD+N+L+ ER REE R  ++++ S+
Sbjct: 321 ALIVYAILTLAIFDLLGVTLTLPGIAGFILSIGMAVDANVLIFERTREELRAGKTLYRSV 380

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           + GF RA+S+I D N+T  IA + LF+ G G V+GFA+T+GL + +SMFTA++  R +M
Sbjct: 381 ESGFFRAFSSILDGNLTTGIACIALFWLGTGLVKGFALTLGLGVAVSMFTALTCSRTLM 439


>gi|198284161|ref|YP_002220482.1| CzcA family heavy metal efflux pump [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|198248682|gb|ACH84275.1| heavy metal efflux pump, CzcA family [Acidithiobacillus
           ferrooxidans ATCC 53993]
          Length = 1036

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/675 (10%), Positives = 184/675 (27%), Gaps = 40/675 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N   ++I   ++   G L  +        L+  P   P   I                
Sbjct: 10  MENRLLVMIAVLVLTVAGTLAVI-----NIPLEAIPDISPTQVI---------IKTSYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    +     +              + + + F          + V  +L 
Sbjct: 56  QAPQIVQDQVTYPLETTLQEVPGAQAVRGYSMFGDSYVYVLFKGGTSIYQARNLVLQYLS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V SKL       L   ++  +               +  + +         ++      
Sbjct: 116 QVQSKLPPGITPALGPNSSGVDWIFEY-ALTDPSGTLNLAQLTTLQNWFLKYELQGISGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ +     +P +L     T  ++       N    G +  +          
Sbjct: 175 AEVATVGGMVQEYQVVVNPQKLLAYNLTLPEVEAAIRAANGETSGSVVDMGEASYIVRTS 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +     +    L               V +                    P       
Sbjct: 235 GYIHSLKALEDASLGVRNGVPITLREVARVQL-------------------GPQLPNGIA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   I       +    I         ++         +           S  
Sbjct: 276 ELNGHGQVVGGIVMMNQGGNAYALIHQIERKLKEIQPSLPKGVKVVTTYSQAPLIQRSIH 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
              G     +  V ++  + +L  +  LVA  ++ L ++    ++  LG    + S+ GI
Sbjct: 336 TLTGKLLEESLAVALISLLFLLRARSALVALIALPLGILAAFFIMWSLGIPANIMSLGGI 395

Query: 421 VLGIGLAVDSNILVNERIREE--NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + IG+ +D+ +++ E + +   +      + +           +F S I   ++ + +F
Sbjct: 396 AIAIGVMMDAPVVMIENMHKHLEHNPGVDPWAAAIAAAEEVGPALFFSLIIIAVSFLPVF 455

Query: 479 FFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
             GG   +     A T   S+  +   ++++V  +M + IR + +             + 
Sbjct: 456 ALGGEEGKLFAPLAFTKTFSVAAAAMLSVTLVPILMAWFIRGRILPESKNPLNRVLAFLY 515

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    +RA +  + +++L +          G  +      G  L +   +   +S+ +
Sbjct: 516 RPVIHGVLRAPWIILVLALLLTATLYYPWNRLGSEFMPPLNEGTLLYMPVTQDPAVSIGQ 575

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +     Q   I     + E  F    + Q     +   + + V   +             
Sbjct: 576 AAALLQQTDRILKTFPEVETVFGEAGRAQTATDQSPLSMFDTVVN-LKNPDQWPAGMTMH 634

Query: 656 IVGPKISRELIRKGI 670
            +  K+++ L   G+
Sbjct: 635 KLQSKMNKALQVPGL 649



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/155 (20%), Positives = 58/155 (37%), Gaps = 4/155 (2%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S    LI +    +   AL A+  L L I          GI  N+ ++  +   IG  ++
Sbjct: 345 SLAVALISLLFLLRARSALVALIALPLGILAAFFIMWSLGIPANIMSLGGIAIAIGVMMD 404

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             VV+ + M K++  +   +        +  E      ++ +   +S LP+   GG    
Sbjct: 405 APVVMIENMHKHL-EHNPGVDPWAAAIAAAEEVGPALFFSLIIIAVSFLPVFALGGEEGK 463

Query: 796 SF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            F   A    F +  AA  S+ +   ++ +    R
Sbjct: 464 LFAPLAFTKTFSVAAAAMLSVTLVPILMAWFIRGR 498



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 9/147 (6%)

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-----DRM 744
            W      + TL L +          G + ++      + L G +    VV+        +
Sbjct: 886  WVEVTIILLTLPLSLVGGFWLVYWLGYKLSVAVAVGFIALAGVAAEFGVVMLLYLDQALI 945

Query: 745  RKNMKLYTTSI-SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
            R+  +    S    +  + +     L     T       +LP+      G  V+   A P
Sbjct: 946  RRQARDTLQSWHDLQLAVIEGTMLRLRPLAMTLTLVVGGLLPIMFSHGAGADVMKRIAAP 1005

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWR 827
            M  G+  AA  ++ +   +       R
Sbjct: 1006 MVGGMFSAALLALLVIPALYALWQKRR 1032


>gi|323706428|ref|ZP_08117990.1| protein-export membrane protein SecD [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534213|gb|EGB24002.1| protein-export membrane protein SecD [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 411

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 137/383 (35%), Positives = 224/383 (58%), Gaps = 29/383 (7%)

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           + + +     V   A+ +++ IIR R+D +G+S+  I + GS+RI I++PG  DP ++  
Sbjct: 51  VYVLEQAQGNVSQDAMTRAISIIRNRVDALGVSQPLIVQQGSNRIRIEIPGVNDPDQVIS 110

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
            LG TA++ F                             + KV ++G  +  + A +   
Sbjct: 111 YLGQTAQLKF--------------------------VGPDGKVILTGADVKDSKAVYQTT 144

Query: 265 T---HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +PVV +  +  GA+ F + T   +GK +A+VLD + ++APV+ + IP GKA I+G
Sbjct: 145 QTGVQEPVVTLDLNSKGAKAFADATAKFVGKQIAIVLDDKTISAPVVQEQIPDGKAVING 204

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               + A  LA ++R G+LP+ L  VE  +VGA LG  ++     A + GL++++LFMI 
Sbjct: 205 MKDFDEAKNLANLIRGGALPVTLKQVEYSSVGATLGPSALKASEEAGMYGLLIVLLFMIA 264

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   GL+AD ++ + +++   + +LL  TL LP IAG++L IG+AVD+NI++ ER++EE
Sbjct: 265 FYRLPGLIADIALGIYIVINFIVYALLHVTLDLPGIAGMLLSIGMAVDANIIIFERMKEE 324

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  +S+  SLD GF +A+  +FDSNIT LIA  VLFF G G V+GFA+T+ + ++ SMF
Sbjct: 325 MRAGKSIRASLDAGFRKAFVAVFDSNITTLIAAFVLFFMGAGTVKGFALTLIIGVISSMF 384

Query: 502 TAISIVRAMMIFIIRYKKMKSID 524
           TAI++ R ++  I+  +  K+I 
Sbjct: 385 TAITVSRFLLKSIVETEFTKNIR 407



 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VG  +    ++      +   + +L+++   ++    L A   L + I      +AL
Sbjct: 232 YSSVGATLGPSALKASEEAGMYGLLIVLLFMIAFYRLP-GLIADIALGIYIVINFIVYAL 290

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             +  +L  +A +L  IG +V+  +++++RM++ M+      S R  +D    +      
Sbjct: 291 LHVTLDLPGIAGMLLSIGMAVDANIIIFERMKEEMRA---GKSIRASLDAGFRKAFVAVF 347

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +++   I+   +   G   +  FA+ +  G++ +  ++I ++  +L
Sbjct: 348 DSNITTLIAAFVLFFMGAGTVKGFALTLIIGVISSMFTAITVSRFLL 394



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 51/157 (32%), Gaps = 6/157 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M++      L  ++  I +       +        P    ++ I LGLDLRGG +++ + 
Sbjct: 1   MKSRGLAKFLSVIVLAIIVAYVAFYGVNAGNYSIKP---VQDSIRLGLDLRGGVYVLEQA 57

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVF-SMRQIQNKITLSFADSRFKENIADKVTLFL 119
              +     +      +R+ +   G+     ++Q  N+I +        + +   +    
Sbjct: 58  QG-NVSQDAMTRAISIIRNRVDALGVSQPLIVQQGSNRIRIEIPGVNDPDQVISYLGQTA 116

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           Q                   + +     +Q  + + +
Sbjct: 117 QLKF-VGPDGKVILTGADVKDSKAVYQTTQTGVQEPV 152


>gi|315503935|ref|YP_004082822.1| acriflavin resistance protein [Micromonospora sp. L5]
 gi|315410554|gb|ADU08671.1| acriflavin resistance protein [Micromonospora sp. L5]
          Length = 1081

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/515 (11%), Positives = 152/515 (29%), Gaps = 44/515 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQS-MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  L+ L +++     L A+P+   Q      FP+A                        
Sbjct: 11  NRGLIALVALVTTAFGLFAVPSLKQQLLPSLEFPAAFIVA--------------TYPGAA 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        + R+    + + +      +++ +K+   L  +
Sbjct: 57  PEIVESQVAEPIENSLQGIPGLDKVTSTSREGAATVQVQYEFGTDLDDVVNKMETALNRI 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S+L       ++  +T+   ++V++        + A +    +    + ++   +    
Sbjct: 117 DSQLPEGVDPQVIAGSTDDLPAVVVAATGDGDERALAEKLRNAV----VPELEALDGVRS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    DP++L         ++        +                    
Sbjct: 173 VDVTGARNQVVTITPDPAKLAAAKVAPTAIASALKSNGVAVPAG---------------- 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G            +T   +  I      A          + + LA       
Sbjct: 217 ----ALADGDRSLPVQVGTPIRTIDDLRGIVLTTAPAAPVRLGDVAAVEQQLAPATSLTR 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +     +              L           V          S    
Sbjct: 273 TNGKPSLGIAVTAAPDGNAVDISHDIRDRLDELG--DAAGAELTVVFDQAPFVEKSIESL 330

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   + ++V+ + +L  +  +V   SI L+V++ L +L     +L L ++  + +
Sbjct: 331 TTEGLLGLVMAVVVILVFLLSVRSTVVTAVSIPLSVLVALIVLWSGDYSLNLLTLGALTI 390

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G  VD +I+V E I+      +    ++          +  S +T +     +   G 
Sbjct: 391 AVGRVVDDSIVVLENIKRHLEYGEPKRDAILTAVREVAGAVTASTLTTVAVFAPIALVGG 450

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G     FAIT+ +++L S+  +++++  +  + 
Sbjct: 451 FVGQLFAPFAITVTVALLASLLVSLTVIPVLAYWF 485



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 69/190 (36%), Gaps = 8/190 (4%)

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
               G       DGE++  V       +  A T+ L+     +        I        
Sbjct: 781 EQVDGPQQVTRIDGERSVSVTGTATGSNLGATTQELQKRLDALDVPGATYVIGGVSADQA 840

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF 718
               +L     + V+ +   + + +   F+    AL  + ++    T  +G   + G   
Sbjct: 841 DAFADL----GLAVLAAIAIVFLIMVATFRSLTQALILLISVPFAATGAIGLLLVTGTPL 896

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            + A+  VL L+G  V + +V+ D + +        +   + + +     L   + T++A
Sbjct: 897 GVPALIGVLMLVGIVVTNAIVLLDLINQYRAQ---GMDVTEAVVEGGRRRLRPILMTAVA 953

Query: 779 AFISVLPMAV 788
              ++LPMA+
Sbjct: 954 TIFALLPMAL 963



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             L  +G++G++++ + +L+++         +    ++ L +   L          NL  
Sbjct: 328 ESLTTEGLLGLVMAVVVILVFLL---SVRSTVVTAVSIPLSVLVALIVLWSGDYSLNLLT 384

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+   +G  V+D +VV + ++   +        RD I  ++ E  G    +++     
Sbjct: 385 LGALTIAVGRVVDDSIVVLENIK---RHLEYGEPKRDAILTAVREVAGAVTASTLTTVAV 441

Query: 783 VLPMAVWGGSVIGSFA-IPMAF 803
             P+A+ GG V   FA   +  
Sbjct: 442 FAPIALVGGFVGQLFAPFAITV 463


>gi|156977578|ref|YP_001448484.1| hypothetical protein VIBHAR_06366 [Vibrio harveyi ATCC BAA-1116]
 gi|156529172|gb|ABU74257.1| hypothetical protein VIBHAR_06366 [Vibrio harveyi ATCC BAA-1116]
          Length = 1059

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/632 (11%), Positives = 172/632 (27%), Gaps = 40/632 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N +LV++ ++   +G L ++ N    + +D  P       I                  
Sbjct: 11  SNRFLVLVATLALVLGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYTLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     E           ++   +   +
Sbjct: 118 APKLPPNAKPTLGPDATGVGWVYSYV-LQDKTGKHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   E G         D    P        +
Sbjct: 237 LTSIEDIK------------------SLPLKVTEKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I       A L+ G       +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIAKVKDKLADLQRGLPEGVEIVATYDRSTLIDAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVISKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLPEHKSPVNRGLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLL-FTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             +    ++     + I++     +                +G +         + +   
Sbjct: 519 RPLLNTSLKYPKTMIVIALGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
           R  L+       +          + R +    
Sbjct: 579 RELLQQTNKLIKTVPEVQTVWGKIGRAETATD 610



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 78/287 (27%), Gaps = 20/287 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  +                   +    L    +V + I
Sbjct: 816  WVFVDIDVRDLGSYVVEAQQVVADQLELPAGYSLAWSGQYEYMERAKDRL--SVVVPITI 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYS 733
            + I +L+Y   R         I  L L +    G     +    F++      + L G +
Sbjct: 874  AIIMLLLYFSFR---RVGEVMIIMLTLPLAMVGGLWLMHILNYNFSIAVGVGFIALAGVA 930

Query: 734  VNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++   +           +  +    +    D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHHKKLDAEESQQKLEAKDLTDAIHEGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +P+      G  V+   A PM  G+  A   ++ +   I        
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQRE 1037



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++     +   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVIAKVKDKLADLQRGLPEGVEIVATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDAAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVISKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|15805766|ref|NP_294463.1| drug transport protein [Deinococcus radiodurans R1]
 gi|6458445|gb|AAF10315.1|AE001929_8 drug transport protein, putative [Deinococcus radiodurans R1]
          Length = 1136

 Score =  132 bits (330), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 59/515 (11%), Positives = 154/515 (29%), Gaps = 43/515 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  + + ++ M+  +GL+        +  ++  P+                        
Sbjct: 34  KNYVFSIGIFVMVVLLGLVATF-----RLGVELLPNFEVPVL---------AVSTSYPGA 79

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V+  +    ++  S L        +    Q+ + ++F+DS   ++ A+ V+  +  
Sbjct: 80  NPDQVDREVSRRVEDAVSTLSGVTDINTTSVSNQSAVVITFSDSTNIDSAANSVSQAVAA 139

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L    +  ++         I+              E +       + ++   E   
Sbjct: 140 IRGTLPDGAEAPVVQKFDPNAQPILTLALLGGAARPS--EVTTFAEDTLVPRLQRVEGVA 197

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     Q+    DP+RL+      A++S                      S   + 
Sbjct: 198 DVTVTGGPERQVQVLLDPARLQGFDLAPARISGAIGSSALDLPAGTLDRGGSTTSYSTRN 257

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +++ I ++ +T                               +    A      
Sbjct: 258 TPRSAADVARIVVDPSTG----------------------LRVSDVATVRDASAAANSYA 295

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +             +  +     +         +    P     +      +   + + 
Sbjct: 296 RVNGQPAVLLGVRKASGTNSVAVTDNVRAAMEAQK--LPPGYRLTLASDTTTSTRATVND 353

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I  G V ++  + +           +I +++     L   LG T  + ++  I+
Sbjct: 354 TFREFLIAVGAVGLICLLFLGRLNTVFAVILAIPISISAAPLLFGTLGFTFNIITLLAII 413

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG+ VD +I+V E ++       S   S+ +G S  +S +  ++ + L   + L    
Sbjct: 414 VAIGIVVDDSIVVAENVQRYRDLGYSPLRSVLLGGSEVFSAVTAASFSLLAVLIPLSLMP 473

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
              G   + F + +  +I++S   ++  +   M +
Sbjct: 474 GILGQFFKQFGLGIAAAIVLSWLESLLFLTVRMAY 508



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/201 (11%), Positives = 75/201 (37%), Gaps = 8/201 (3%)

Query: 631  QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-K 689
            Q  V + V+K       ++           ++ +L+  G + ++ + +   + +  +F  
Sbjct: 926  QKDVQQRVEKAGLLAGGVTLGNANSFGSAGLTGDLLFYGPILMVAAVLLTYLVLGSQFNS 985

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            + + +  +  + L I   L    LFG+  ++  V  ++ L+G S  + ++      + + 
Sbjct: 986  FRYPIYLLLPIPLAIVGALWTLHLFGVNLDVITVLGMVILLGLSTKNSILYL----EFVT 1041

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                 +   + + ++        + T++   +  +P+ +    G        I +  G+V
Sbjct: 1042 ERARVLPLHEALLEAAELRFRPILMTTLTVLVISIPLILGHGEGAEFRRGLGIVILGGVV 1101

Query: 807  VAASSSIFIAAPILLFIYDWR 827
             +   + ++   +       R
Sbjct: 1102 TSTLLTFYVVPSVFWQFEKKR 1122



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 86/254 (33%), Gaps = 11/254 (4%)

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL-VRLQYQPGD 627
            N         ++ V  +  + +S V +  ++    +   +        L VR       
Sbjct: 256 RNTPRSAADVARIVVDPSTGLRVSDVATVRDASAAANSYARVNGQPAVLLGVRKASGTNS 315

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                 V   ++ +        T+ +      + +     +  +  + +   + +    R
Sbjct: 316 VAVTDNVRAAMEAQKLPPGYRLTLASDTTTSTRATVNDTFREFLIAVGAVGLICLLFLGR 375

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
               FA+  I  + + I+     F   G  FN+  + A++  IG  V+D +VV     +N
Sbjct: 376 LNTVFAV--ILAIPISISAAPLLFGTLGFTFNIITLLAIIVAIGIVVDDSIVVA----EN 429

Query: 748 MKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
           ++ Y     S    +    +E        S +    ++P+++     G     F + +A 
Sbjct: 430 VQRYRDLGYSPLRSVLLGGSEVFSAVTAASFSLLAVLIPLSLMPGILGQFFKQFGLGIAA 489

Query: 804 GIVVAASSSIFIAA 817
            IV++   S+    
Sbjct: 490 AIVLSWLESLLFLT 503


>gi|329894744|ref|ZP_08270546.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [gamma proteobacterium IMCC3088]
 gi|328922791|gb|EGG30123.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [gamma proteobacterium IMCC3088]
          Length = 834

 Score =  132 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 72/595 (12%), Positives = 165/595 (27%), Gaps = 44/595 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + V+L ++I   G + AL N    + +D  P       I                   
Sbjct: 12  NRFFVLLTTLIIAFGGIFALKN----TPVDALPDLSDVQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F D         +V  +L  V 
Sbjct: 59  QVVQDQVTFPLTTAMLSVPGAQTVRGYSFFGDSYVYIIFDDDTDLYWARSRVLEYLSQVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S L    K  L    T      +              +           ++       + 
Sbjct: 119 SSLPDAAKPQLGPDATGVGWVYIY-ALTDKSGNHDLSQLRSIQDWFLKYELQTVPGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q   + DP +LR        +       N      +  +            +
Sbjct: 178 AAIGGMVKQYQVQVDPDKLRAYGIPLTHVQMALKRGNQETGASVVEMAEAEYMVTATGYI 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +   +I                    + +  +E G         D    P        + 
Sbjct: 238 QSVGDIE------------------KIPLGVNEQGTPLRIGDIADVGLGPQMRRGIAELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   +   +   +   TI+        L+A        +           + S   
Sbjct: 280 GEGEVVGGVVVMRFGENAQQTIDGVKEKLESLKASLPEGIEVVPVYDRSKLIERAVSNLS 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   +V ++    + + +  +VA  ++ L ++++  ++ + G    + S+ GI + 
Sbjct: 340 DKLIEELIVVALICAAFLFHLRSSIVAVITLPLGILVSFIIMYMQGINANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENR---------KNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           IG   D  I++ E + +             +++ +  +    S     +F S +   ++ 
Sbjct: 400 IGAMTDGAIVMIENMHKHMEALNKKGVPLTDENRWQIVAKAASEVGPALFFSLLIITVSF 459

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + +F      G      A T   ++  S   AI++V  +M + IR K +           
Sbjct: 460 LPVFILEAQEGRMFAPLAYTKTYAMAASAGLAITLVPVLMGYFIRGKIISEKKNPLNRVL 519

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +   +  Q M+     + I++L +      +   G  +      G  + +   
Sbjct: 520 TALYMPVLRQVMKFPKSTIVIALLVTAVGFWPVNKIGSEFIPPLDEGDLMYMPTT 574



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 67/165 (40%), Gaps = 11/165 (6%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++++ I         F    ++ A+ TL L I  +     + GI  N+ ++  +   IG 
Sbjct: 347 IVVALICA----AFLFHLRSSIVAVITLPLGILVSFIIMYMQGINANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFR------DLIDKSINETLGRSVYTSMAAFISVLPM 786
             +  +V+ + M K+M+                ++ K+ +E      ++ +   +S LP+
Sbjct: 403 MTDGAIVMIENMHKHMEALNKKGVPLTDENRWQIVAKAASEVGPALFFSLLIITVSFLPV 462

Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +        FA P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 463 FILEAQEGRMFA-PLAYTKTYAMAASAGLAITLVPVLMGYFIRGK 506


>gi|53724158|ref|YP_103273.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei ATCC 23344]
 gi|67641656|ref|ZP_00440426.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Burkholderia mallei GB8 horse 4]
 gi|121599973|ref|YP_993458.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei SAVP1]
 gi|126448216|ref|YP_001080967.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei NCTC 10247]
 gi|166999616|ref|ZP_02265451.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei PRL-20]
 gi|254178656|ref|ZP_04885311.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei ATCC 10399]
 gi|254200223|ref|ZP_04906589.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei FMH]
 gi|254209303|ref|ZP_04915649.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei JHU]
 gi|254358026|ref|ZP_04974299.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei 2002721280]
 gi|52427581|gb|AAU48174.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei ATCC 23344]
 gi|121228783|gb|ABM51301.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei SAVP1]
 gi|126241086|gb|ABO04179.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei NCTC 10247]
 gi|147749819|gb|EDK56893.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei FMH]
 gi|147750076|gb|EDK57147.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei JHU]
 gi|148027153|gb|EDK85174.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei 2002721280]
 gi|160699695|gb|EDP89665.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei ATCC 10399]
 gi|238522611|gb|EEP86054.1| multidrug resistance protein MdtC (Multidrug transporter mdtC)
           [Burkholderia mallei GB8 horse 4]
 gi|243064268|gb|EES46454.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei PRL-20]
          Length = 1048

 Score =  132 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/590 (12%), Positives = 160/590 (27%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGELPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +     +  +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFLASVAASVFLYVGIPKGFFPQQ 559



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALHGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGELPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|226229011|ref|YP_002763117.1| cation/multidrug efflux pump [Gemmatimonas aurantiaca T-27]
 gi|226092202|dbj|BAH40647.1| cation/multidrug efflux pump [Gemmatimonas aurantiaca T-27]
          Length = 1064

 Score =  132 bits (330), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 58/571 (10%), Positives = 149/571 (26%), Gaps = 48/571 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     ++   ++   G+L A+     +   D  P                   ++   
Sbjct: 8   LRRPYTFIVGALLVVLFGVLSAI-----RMPTDILPELDIPV-----------VSVIW-- 49

Query: 61  DEDDFVNGFLQM-----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
             +      ++      Y   + + +                I + F      E+   ++
Sbjct: 50  SYNGLPPEEMERRFGTPYERAVTTTVNDVEHIESQSLAGVTVIKVFFQPGARIESAVAQL 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +   +        +V      + ++      D +     + S         ++ 
Sbjct: 110 AAVSQSILRIMPPGAAAPFIVRYNAANVPVLQLALGGDSLSEQ--QLSDLGTNGIRTRLA 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP +L     +   +S                      
Sbjct: 168 TVRGASVPQPYGGRSRLINVDLDPVQLFARGLSPTDVSDAITAQ---------------- 211

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                 ++       G        N  P   + + D+    +            +    +
Sbjct: 212 ----NLVLPGGTAKIGEREYVVRLNGSPDMVEAMNDLPIRVVNGALVRIRDVAYVRDGYS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           V  +                    S    +         + A   P     +        
Sbjct: 268 VQTNIVHRDGVRGALIQVLKSGGASTIDVVNRVREALPGILATLPPALKVDILADQSLFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L   ++ + +   +  L+   SI L+++ ++ +LS+LG TL + 
Sbjct: 328 KAALKGVVIEALIAACLTAAMILIFLGSWRSTLIVALSIPLSILCSVTVLSMLGQTLNVM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I         +  ++  G  +       S +   I  V
Sbjct: 388 TLGGLALAVGVLVDDATVGIENIHRVQEHEPDIEKAILDGAGQIAIPTLVSTLAICIVFV 447

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF     G   R  A+ +  +++ S   + ++V  ++ + +  ++        + +  
Sbjct: 448 PIFFLSGAAGSLFRPLAMAVVFAMMASYVISRTLVPTLVRYAMERERALEAKRAGMPKRP 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICL 563
                    F                  +  
Sbjct: 508 GFFAQFHHSFEHRFEQWRVNYRETITTMLAR 538



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 73/204 (35%), Gaps = 4/204 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               RV E +   +  + P   +         +   L    I  +I + +   + +    
Sbjct: 295 DVVNRVREALPGILATLPPALKVDILADQSLFVKAALKGVVIEALIAACLTAAMILIFLG 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    ++ L I  ++   ++ G   N+  +  +   +G  V+D  V  + +    
Sbjct: 355 SWRSTLIVALSIPLSILCSVTVLSMLGQTLNVMTLGGLALAVGVLVDDATVGIENIH--- 411

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           ++          I     +    ++ +++A  I  +P+    G+    F  P+A  +V A
Sbjct: 412 RVQEHEPDIEKAILDGAGQIAIPTLVSTLAICIVFVPIFFLSGAAGSLFR-PLAMAVVFA 470

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
             +S  I+  ++  +  +  +  R
Sbjct: 471 MMASYVISRTLVPTLVRYAMERER 494



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 159/524 (30%), Gaps = 28/524 (5%)

Query: 13   MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
            ++   GL++     L   +   F   +   +I L L    G+ L         V   ++ 
Sbjct: 542  LMTVAGLVVLSAAALSPWLGRDFFPQIDAGQIRLHLRAPVGTRLEETARIVAAVEARIRD 601

Query: 73   YS--DELRSFLKKEGIGVFSMRQ-----------IQNKITLSFADSRFKENIADKVTLFL 119
                 +L + +   G+   S                  + +S  + R  +   D      
Sbjct: 602  IIPPGDLATMIDNIGLATTSSTNLAYSDNPTIGMTDADLLISLTEHRVGKTA-DYARRIR 660

Query: 120  QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            + V  +               + ++  L      QV+     +++++ R   ++I     
Sbjct: 661  RMVRDEFPDVLVFFQSADIVGQILNAGLPAPVNVQVVGANRAENIKVARVLEERIKKIPG 720

Query: 180  TIQRLGSHRILIQLPGE-QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
             +      R+         D +R   +  T   ++   ++   S       V      +G
Sbjct: 721  AVDVYLQQRLEAPQLNVTVDRARAASMSLTQRDVANDLLVSLASSGQAQPNVWLNP-QNG 779

Query: 239  NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             QY V  +            A+ +     PV+  +    GA          + +  +V +
Sbjct: 780  VQYSVSVQTP------QYRIASIEDIGRTPVLSAAGVNSGAMPQLFQNIATVQRGTSVGV 833

Query: 299  DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                  APV                 +     +       SLP    +V    V +   S
Sbjct: 834  ISHYDVAPV---YDVYANVLDRDLGAVAGDIDVVLDSLKESLPRGTTLVMRGQVASMRTS 890

Query: 359  DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
             +           LV +++ +        L+   ++ L +   +  L   G T+++P+  
Sbjct: 891  YTGLATGLVFAIVLVYLIMVINFQSWLDPLIIACALPLALAGVIWALYACGNTISVPAFM 950

Query: 419  GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL- 477
            G ++ +G+A  + ILV     E      +   +     +     +  + +  ++  V + 
Sbjct: 951  GAIMSMGVATANGILVVSFANERMDAGLTALEAAIEAAATRLRPVIMTALAMIVGMVPMA 1010

Query: 478  --FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
                 GG         +   +L + F  ++++  +   +  ++ 
Sbjct: 1011 LGLGEGGEQNAPLGRAVIGGLLFATFATLTLLPFVYSRLRAHRH 1054



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 61/161 (37%), Gaps = 7/161 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             G++ + + + + + I F  W   L     L L +   +      G   ++ A    +  
Sbjct: 896  TGLVFAIVLVYLIMVINFQSWLDPLIIACALPLALAGVIWALYACGNTISVPAFMGAIMS 955

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + ++V     +        ++  +   ++    L   + T++A  + ++PMA+ 
Sbjct: 956  MGVATANGILVVSFANE---RMDAGLTALEAAIEAAATRLRPVIMTALAMIVGMVPMALG 1012

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               GG         +  G++ A  +++ +   +   +   R
Sbjct: 1013 LGEGGEQNAPLGRAVIGGLLFATFATLTLLPFVYSRLRAHR 1053


>gi|323138963|ref|ZP_08074024.1| acriflavin resistance protein [Methylocystis sp. ATCC 49242]
 gi|322395809|gb|EFX98349.1| acriflavin resistance protein [Methylocystis sp. ATCC 49242]
          Length = 1028

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 63/517 (12%), Positives = 144/517 (27%), Gaps = 43/517 (8%)

Query: 2   RNNPWLVILYSMICCIGL--LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           R      ++  +I  +GL  L  LP        +   + M       G D          
Sbjct: 9   RRPVLASVVSLLILVLGLRSLATLPVLQYPRTQNAVVTVMTS---YFGAD---------- 55

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V GF+    +   +          + +   + IT +   +        +++  +
Sbjct: 56  ---PATVAGFVTTPLENAIAQANGIDYLTSTSQIGVSTITANLRLNYDSGKALTEISTKV 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V ++L    ++ ++     +    +    N D +    +  +  +IR    ++     
Sbjct: 113 DSVINQLPQAVQRPVITVKIGQTTDAMYLGFNSDILTPSQV--TDYLIRVVQPRLQSVPG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        L    DP RL     T  +++      +          ++       
Sbjct: 171 VQTAELIGGKTFALRAWLDPVRLAAYGLTATEVAASLQGNDYIAGLGSTKGQW------- 223

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                             +A     + +   ++   +            N+         
Sbjct: 224 -------------VQVNLSAATSLHSLEEFRNLVVKQANGANVKLRDVANVTLGADDYES 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                               +    ++        +         + +          S 
Sbjct: 271 SVSFDGKKAVYIGILVAPNANLLDVVKGVKDAYPDILKTLPKGLNSEIVYDTTNFVNSSI 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                T      +V  V+F+ +   +  L+   +I L++I +L  L   G ++ L ++  
Sbjct: 331 DEVVHTLIEAVLIVTAVVFVFLGSWRSVLIPIMAIPLSLIGSLTFLLAFGFSINLLTLLA 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL IGL VD  I+V E +     +  +   +  +        I    I  +   V + F
Sbjct: 391 LVLAIGLVVDDAIIVVENVNRHLAEGLTPVNAALLAARELAGPIIAMTIVLIAVYVPIGF 450

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            G   G     FA T+  ++ +S   A+++       
Sbjct: 451 QGGLTGALFVEFAFTLAAAVTVSGIVALTLSPVSCAL 487



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/241 (13%), Positives = 84/241 (34%), Gaps = 14/241 (5%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V LS V     ++    ++                      A   + E  ++ +     +
Sbjct: 774  VPLSTVAKLETTIVPESLNHFQQINSVTISGVAAPGVIAGEALDALREAARQVLPSTYTI 833

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
                 +     +    L+  G      + I + + +  +F+ +   L  + ++ + I   
Sbjct: 834  DYAGPSRQFVQESGGFLVTFGF-----ALIIIFLALAAQFESFRDPLIILVSVPMSIAGA 888

Query: 708  LGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            L F      G   N+     ++TL+G      +++ +   +         S R+ I K+ 
Sbjct: 889  LAFILLGFGGASINIYTQVGLVTLMGLISKHGILIVEFANELRHA---GASKREAILKAT 945

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T+ A  + V+P+ +    G +   +  + +A G+ +    ++F+   + L 
Sbjct: 946  AIRLRPILMTTAAMVLGVVPLILASGAGAASRYNMGLVIASGLSIGTLFTLFVLPAVYLV 1005

Query: 823  I 823
            +
Sbjct: 1006 L 1006



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 47/477 (9%), Positives = 132/477 (27%), Gaps = 36/477 (7%)

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
              V+ +L +++       +            + +++         ++AG V        
Sbjct: 13  LASVVSLLILVLGLRSLATLPVLQYPRTQNAVVTVMTS-YFGADPATVAGFVTTPLENAI 71

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           +     + +   ++   S   +       +   + + +         L       V    
Sbjct: 72  AQANGIDYLTSTSQIGVSTITANLRLNYDSGKALTEISTKVDSVINQLPQAVQRPVITVK 131

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           I      +   F +  +  + +   +       +   P  +   +               
Sbjct: 132 IGQTTDAMYLGFNSDILTPSQVTDYLIRVVQPRLQSVPGVQTAELIGGKTFALRAWLDPV 191

Query: 550 --------------------VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                                   +  +      +           +    L V      
Sbjct: 192 RLAAYGLTATEVAASLQGNDYIAGLGSTKGQWVQVNLSAATSLHSLEEFRNLVVKQANGA 251

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT------RVLEMVKKKIT 643
           ++ +      +L   D         K  +        ++               + K + 
Sbjct: 252 NVKLRDVANVTLGADDYESSVSFDGKKAVYIGILVAPNANLLDVVKGVKDAYPDILKTLP 311

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
           + +    + +T         E++   I  V+I    + +++     W   L  I  + L 
Sbjct: 312 KGLNSEIVYDTTNFVNSSIDEVVHTLIEAVLIVTAVVFVFLG---SWRSVLIPIMAIPLS 368

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  +L F   FG   NL  + A++  IG  V+D ++V + +    +     ++  +    
Sbjct: 369 LIGSLTFLLAFGFSINLLTLLALVLAIGLVVDDAIIVVENVN---RHLAEGLTPVNAALL 425

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  E  G  +  ++      +P+   G   G++   FA  +A  + V+   ++ ++ 
Sbjct: 426 AARELAGPIIAMTIVLIAVYVPIGFQGGLTGALFVEFAFTLAAAVTVSGIVALTLSP 482


>gi|110799636|ref|YP_696621.1| preprotein translocase subunit SecD [Clostridium perfringens ATCC
           13124]
 gi|169343500|ref|ZP_02864499.1| protein-export membrane protein SecD [Clostridium perfringens C
           str. JGS1495]
 gi|182624426|ref|ZP_02952210.1| protein-export membrane protein SecD [Clostridium perfringens D
           str. JGS1721]
 gi|110674283|gb|ABG83270.1| protein-export membrane protein SecD [Clostridium perfringens ATCC
           13124]
 gi|169298060|gb|EDS80150.1| protein-export membrane protein SecD [Clostridium perfringens C
           str. JGS1495]
 gi|177910429|gb|EDT72806.1| protein-export membrane protein SecD [Clostridium perfringens D
           str. JGS1721]
          Length = 419

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E VG ++    +   +    I    + +++ + ++      A  +L + I   L  FA
Sbjct: 231 SVETVGAQLGANALPNALKAGAIGVAIIFLFMILYYRVP-GFIACMSLSVYILLVLYIFA 289

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G+   L  +AA L  +G +V+  V++++R+++ +       S    +    +  L   
Sbjct: 290 LVGVTLTLPGIAAFLLTVGMAVDANVLIFERIKEEL---GNGRSITSAMKIGFSNALRSI 346

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           + +++   I+ L +  +G   +  FA+ +  GIV++  ++I +    +  
Sbjct: 347 MDSNITTLIAGLVLYFFGSGPVKGFALTLLIGIVISMFTAIIMTRFFMNL 396



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 216/381 (56%), Gaps = 26/381 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +   + V    +  + E++  R++++G+SE+ +   G++RI I +PG+ D   +   
Sbjct: 55  VLMEIQSNDVTVDQLNTTKELLSLRVNKVGVSETVVTTEGNNRIRIDIPGQYDSGTIVDS 114

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           L  T +++F                             ED V ++G  +  ++   DP+T
Sbjct: 115 LQKTGELTF--------------------------VGPEDDVILTGKDVEKSSVYIDPQT 148

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            KPV+ +  +E G ++F E T+   G+ +A+ +D   LT PV+N  I +G+A ISGN ++
Sbjct: 149 GKPVIKLELNEEGKQKFAEATKKYKGQKIAIKMDNETLTDPVVNDIISNGEAIISGNRSM 208

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  ++ ++ AG+LP+ +  V    VGA LG++++     A   G+ +I LFMI+ Y  
Sbjct: 209 EEAEKVSGIINAGALPVPVKAVSVETVGAQLGANALPNALKAGAIGVAIIFLFMILYYRV 268

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G +A  S+ + ++L L + +L+G TLTLP IA  +L +G+AVD+N+L+ ERI+EE    
Sbjct: 269 PGFIACMSLSVYILLVLYIFALVGVTLTLPGIAAFLLTVGMAVDANVLIFERIKEELGNG 328

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  ++ +GFS A  +I DSNIT LIA +VL+FFG G V+GFA+T+ + I+ISMFTAI 
Sbjct: 329 RSITSAMKIGFSNALRSIMDSNITTLIAGLVLYFFGSGPVKGFALTLLIGIVISMFTAII 388

Query: 506 IVRAMMIFIIRYKKMKSIDIN 526
           + R  M        +    + 
Sbjct: 389 MTRFFMNLGFNMGILNKPSMF 409



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 41/142 (28%), Gaps = 2/142 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +     +   I    +            L  +        I+ GLDL+GG  +++E+
Sbjct: 1   MK-SKLGSFILFFISIAVISFLALAGFKGFTLGDYQFKTFNEVITKGLDLQGGVSVLMEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFL 119
             +D     L    + L   + K G+    +     N+I +          I D +    
Sbjct: 60  QSNDVTVDQLNTTKELLSLRVNKVGVSETVVTTEGNNRIRIDIPGQYDSGTIVDSLQKTG 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEK 141
           +        D            
Sbjct: 120 ELTFVGPEDDVILTGKDVEKSS 141


>gi|78777081|ref|YP_393396.1| heavy metal efflux pump CzcA [Sulfurimonas denitrificans DSM 1251]
 gi|78497621|gb|ABB44161.1| Resistance-Nodulation-Cell Division Superfamily transporter
           [Sulfurimonas denitrificans DSM 1251]
          Length = 1015

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/669 (11%), Positives = 177/669 (26%), Gaps = 44/669 (6%)

Query: 11  YSMICCIGLLIALPNFLP--QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
             ++  +  ++   +        LD  P   P   I           +  E      +  
Sbjct: 13  IFLVLILSAILTFVSIFSLKNISLDALPDLSPPQVI---------LQVSYEGQSPKIIEE 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +          L                I + F D         ++   L  +   L  
Sbjct: 64  QVSYPLISSLMSLPNIKTIRAMSSFQNALIYIIFKDDTDIYAARSRILEQLSSILPTLPE 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
             K ++    T    +       +     +  E            +   +   +      
Sbjct: 124 GAKVSMGPDATGVGWAYQYI---LKSNKLNLSELRDYQDYYLKYGLLGVDGVSEVAAVGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            +       D  ++ +      ++       N  K G +       +    +  +    +
Sbjct: 181 FVKNYQLLIDQDKMVKYDIGIDEIINALKKNNQDKGGGVLLENGYENIIQARGYLTSLED 240

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +  I L               V  +         F    + +G  + V            
Sbjct: 241 MKNITLKVNGVTPLRLLDIGEVVETPQSRRGVADFNGEGEVVGGIVLVRYKEN------- 293

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                          T E    + A +          I           +    K T   
Sbjct: 294 ---------------TYEVIKKIKAKIETLKSEDVEIITTYDRSKLIDKAIDTLKNTLLE 338

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + +V+I+  + + + +  LV    + + ++LT  L+SL      + S+ GI + IG  V
Sbjct: 339 ESIIVIIITTLFLFHFRSALVVIIVLPMTILLTFWLMSLFEIGSNIMSLGGIAIAIGAMV 398

Query: 429 DSNILVNERIREENRKNQ---SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG-- 483
           D++I++ E   +   K+    S    +     +    IF + I  +++ + +F   G   
Sbjct: 399 DASIVMIENAHKHLSKSDGTKSRVEIIIDSSKQVGRPIFFALILIVVSFLPIFALEGQEA 458

Query: 484 -AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   ++LI    +I++V  +MI  I+    K         F  +   +   F
Sbjct: 459 RLFSPLAYTKTFAMLIGALLSITLVPVLMILFIKGDIKKEESNYINRFFIFLYTPLLKLF 518

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           ++ ++      ++       L       +         + +          +   +    
Sbjct: 519 LKLKYLVFVFLVIGIAYIYPLYNAQKWEFMPQLNEQDFMYMPVTPYGISIDLAKEITQ-- 576

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             D   ++F        +       +      +        +          E +  ++ 
Sbjct: 577 ETDRIIKSFPEVDTVFGKAGRANSATDPAPLGMIETIITFKDKSVWREGMTYERLMQEME 636

Query: 663 RELIRKGIV 671
            +L  KG++
Sbjct: 637 EKLKIKGLI 645



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/158 (20%), Positives = 63/158 (39%), Gaps = 3/158 (1%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S I ++I     F +  AL  I  L + I  T    +LF I  N+ ++  +   IG  V+
Sbjct: 340 SIIVIIITTLFLFHFRSALVVIIVLPMTILLTFWLMSLFEIGSNIMSLGGIAIAIGAMVD 399

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V+ +   K++     + S  ++I  S  +      +  +   +S LP+    G    
Sbjct: 400 ASIVMIENAHKHLSKSDGTKSRVEIIIDSSKQVGRPIFFALILIVVSFLPIFALEGQEAR 459

Query: 796 SF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            F   A    F +++ A  SI +   +++       K 
Sbjct: 460 LFSPLAYTKTFAMLIGALLSITLVPVLMILFIKGDIKK 497



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 70/218 (32%), Gaps = 9/218 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            + +      S      EK   V   Y    S       +   K   + + L      E 
Sbjct: 784 EMFAEIKYIESPSVIKSEKGMKVSFVYITPKSDVSADEYKSAAKDALQSIELPKGYYYEF 843

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAITTLILDITKTLGFFAL-- 713
            G     E  +K +   II  + + I++ I F     L   I    L      G   +  
Sbjct: 844 AGQSEYLEAAKKRL-AFIIPIVLLSIFVLIYFALKDVLNSLIVFSTLPFAILGGLLYIDY 902

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   ++  V   L L+G +    +V+   +     +     + ++ I +     L   +
Sbjct: 903 LGFNLSIAVVVGFLALLGIAAETAIVMI--IYLEEAINEKISTHQEAIIRGSAGRLRPKL 960

Query: 774 YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
            T  A    ++P+      G  V+   A PM  GIV +
Sbjct: 961 MTVFAILGGLIPIMYIHGVGSEVMQRIAAPMIGGIVTS 998


>gi|15890354|ref|NP_356026.1| AcrB/AcrD/AcrF family protein [Agrobacterium tumefaciens str. C58]
 gi|15158567|gb|AAK88811.1| AcrB/AcrD/AcrF family protein [Agrobacterium tumefaciens str. C58]
          Length = 1048

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 66/557 (11%), Positives = 162/557 (29%), Gaps = 40/557 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++   +  +G        L +  LD++P+      +                   
Sbjct: 11  PVFATMMMVALLVMGAFS-----LQRLGLDQYPNVDVPVVV---------VVTSYPGATP 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    ++  + +        +  + ++ +   F         A +V   +  + 
Sbjct: 57  ETVEMEVTRPVEDALNAIGGLDEVTSTSYEGRSVVVAKFKLEVQSSAAAQEVRDKIAAIE 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +    D KK ++         I+    +   +       +    ++ + Q+       Q 
Sbjct: 117 ANFPEDTKKPVISRFDPAAEPILSLAISSTSL--DVPALATLAEQKVVRQLTTVAGIGQA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   Q+    D +R+R L     ++       N++             +   Q  +
Sbjct: 175 TLVGGRKRQIDVTIDETRMRALGIGVNEVVTALRAGNSNSPAGSVVDPVSERTIQIQSRI 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           E+   +                    +D+     G           + +  A   +  + 
Sbjct: 235 EEPEAL--------------------LDMVVARRGGVAILLRDVATLSEGAADAENRAIY 274

Query: 304 TAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                           +    +      L A+    S       +   +      S +  
Sbjct: 275 NGQTALAIDIVKVQDANTVQVVSDVRKRLDALNAELSPQNIQLRIVTDSSIPIQESVTQV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T    A L + ++F+ +   +  ++   ++ + +I TL ++  LG TL   S+  + L
Sbjct: 335 QTTLIEGAALAVAIVFLFLNSWRSTVITGLTLPIAIIGTLTVVDFLGFTLNTLSLLALTL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG+ VD  I+V E I       +S   +   G       +  +  T +   + + F   
Sbjct: 395 SIGILVDDAIVVRENITRHLHMGKSHLRAALDGTGEIGLAVIATTATIVAVFLPVAFMDG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     F +T+  ++LIS+F A ++   +                P+ R     D   
Sbjct: 455 IVGRFFYQFGVTVSAAVLISLFVAFTLDPMLSSVWYDPDAQADAKRGPIGRLIARFDHGF 514

Query: 540 IQFMRARFWGVGISILF 556
                     +  ++  
Sbjct: 515 EWMAGQYRHAIDWTLRH 531



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 79/223 (35%), Gaps = 7/223 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
             N    L            V E ++         +  +       +  +E +      + 
Sbjct: 808  DNRREILVSANITGRTLGDVTETLQGLTASRDLPAGYRIRFGGEAETMQETVGHMGTALS 867

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ I + I +  +F  +   L  + +L L +   L    + G   N+ ++   + L+G  
Sbjct: 868  MAIIFIYIVLASQFGSFLQPLAIMVSLPLSLIGVLLGLMVAGSTINMFSLIGFIMLMGLV 927

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
              + +++ D   +  +     ++  + +  +        + T++A    ++P+ +  G  
Sbjct: 928  TKNGILLVDFANRERR---RGLTLNEALANAGVIRFRPIIMTTLAMIFGMIPLGLAVGGG 984

Query: 794  I---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                   A  +  G++ +   ++ +   IL +I     + AR+
Sbjct: 985  GAQRAPMAHAVVGGLISSTLLTLIVVPVILSYIDSITRRFARL 1027



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 76/232 (32%), Gaps = 9/232 (3%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            +    + +  N        +            + V + +     E+ P +         
Sbjct: 264 GAADAENRAIYNGQTALAIDIVKVQDANTVQVVSDVRKRLDALNAELSPQNIQLRIVTDS 323

Query: 659 PKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
               +E + +    +I  +A+A+ I       W   +    TL + I  TL      G  
Sbjct: 324 SIPIQESVTQVQTTLIEGAALAVAIVFLFLNSWRSTVITGLTLPIAIIGTLTVVDFLGFT 383

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTS 776
            N  ++ A+   IG  V+D +VV    R+N+  +     S          E     + T+
Sbjct: 384 LNTLSLLALTLSIGILVDDAIVV----RENITRHLHMGKSHLRAALDGTGEIGLAVIATT 439

Query: 777 MAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                  LP+A   G V      F + ++  ++++   +  +   +    YD
Sbjct: 440 ATIVAVFLPVAFMDGIVGRFFYQFGVTVSAAVLISLFVAFTLDPMLSSVWYD 491


>gi|315126560|ref|YP_004068563.1| RND family efflux transporter [Pseudoalteromonas sp. SM9913]
 gi|315015074|gb|ADT68412.1| RND family efflux transporter [Pseudoalteromonas sp. SM9913]
          Length = 1026

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/559 (13%), Positives = 175/559 (31%), Gaps = 41/559 (7%)

Query: 12  SMICCIGLLIALPNFLPQSMLD--RFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
            +I  + LLI +      + ++    P       I++     GGS         + V+  
Sbjct: 19  VLIVVLNLLIIIAGIAAIAGVEVRELPDVDRPR-ITVSASFPGGS--------PETVDTE 69

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +   + +           +  ++I + F      ++ A++    +  V  +L  +
Sbjct: 70  VTSKLEGAVARVSGVKSIRAQSEEGNSRIVVEFRPGVNLDDAANETRESVARVQRELPEE 129

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            ++  ++       ++V    + + +   A+ + +++      Q            +   
Sbjct: 130 VERVSIIKADNDAEAVVSLTVSSESLSLEALTERVDVD--LAPQFLTIPGVADVRLNGDR 187

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              L    DP +L     T   ++                    +             ++
Sbjct: 188 ERVLRVRIDPLKLSSFNLTIPDVADVLRQAPFDVPAGSLKSNDQQIIVRADATSVTPAQV 247

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I + G T                               +    A       L    + 
Sbjct: 248 GDIIIQGDT------------------------RISDIAAVYFGPADPRSMVRLNGKPVI 283

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 +AQ +     +    L   +R     ++  +    +      S      +  + 
Sbjct: 284 GMEIIRQAQSNTIEISDEVLNLIEGMRERFPEMEFTLTS-DDAQFIRSSVDEVINSLVLT 342

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV+I L++ +   +  LV  F+I + +I +LAL+  LG ++ + ++  +VL  GL VD
Sbjct: 343 VLLVIITLWVFIGSWRATLVPAFAIPVALIGSLALIWALGFSINILTLLALVLATGLIVD 402

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVR 486
             I+V+E I+ +         +  +G    +  +  +        V + F     G   R
Sbjct: 403 DAIVVSENIQRQRGLGLGRRAAAVVGTREVFFAVIATTAVLAAVFVPIAFLPSTAGRLFR 462

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F   +  +++IS F A+S+V A+   +   +          +    I      + +   
Sbjct: 463 EFGGVLAGAVIISSFVALSLVPALTSKLKLKQGGFHPFAKFGNVLANIYTKTIHKVLDHA 522

Query: 547 FWGVGISILFSICSICLLF 565
           +    + +L +  S  L  
Sbjct: 523 WVTFIVCLLVAGGSGALYM 541



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/234 (11%), Positives = 76/234 (32%), Gaps = 9/234 (3%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
                   +   N        +  Q Q         VL +++                  
Sbjct: 266 FGPADPRSMVRLNGKPVIGMEIIRQAQSNTIEISDEVLNLIEGMRERF--PEMEFTLTSD 323

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI 716
             +  R  + + I  ++++ + ++I +W+    W   L     + + +  +L      G 
Sbjct: 324 DAQFIRSSVDEVINSLVLTVLLVIITLWVFIGSWRATLVPAFAIPVALIGSLALIWALGF 383

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             N+  + A++   G  V+D +VV + +    +     +  R        E     + T+
Sbjct: 384 SINILTLLALVLATGLIVDDAIVVSENI---QRQRGLGLGRRAAAVVGTREVFFAVIATT 440

Query: 777 MAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                  +P+A      G +   F   +A  +++++  ++ +   +   +   +
Sbjct: 441 AVLAAVFVPIAFLPSTAGRLFREFGGVLAGAVIISSFVALSLVPALTSKLKLKQ 494



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 67/162 (41%), Gaps = 7/162 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +F+    A+  + T+   IT  +    L G   N+ +   ++ LIG 
Sbjct: 854  VLAFLIVFLVLAAQFENVNSAIVVMITVPFGITSAILALYLTGTSLNIYSQIGLVMLIGL 913

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ +      +L    +S R  ++++    L     T ++  +  LP+ +    
Sbjct: 914  IAKNAILLVEFA---DQLRDQGLSVRKAVEQAALVRLRPITMTLISTLLGALPLIMSTGA 970

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G     +    +  G+ +A   ++++   I L +  + +   
Sbjct: 971  GAEARNAIGWVVFGGLALAVLFTLYLTPVIYLGLARFTSPRG 1012


>gi|124383664|ref|YP_001029109.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei NCTC 10229]
 gi|124291684|gb|ABN00953.1| AcrB/AcrD/AcrF family protein [Burkholderia mallei NCTC 10229]
          Length = 1048

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/558 (12%), Positives = 154/558 (27%), Gaps = 39/558 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGELPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGV 550
                 A  + RA    +
Sbjct: 510 RAFARTAAAYERALDVAL 527



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALHGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGELPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|329915430|ref|ZP_08276274.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327544897|gb|EGF30257.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 1038

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/594 (12%), Positives = 168/594 (28%), Gaps = 34/594 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                     + ++  +    +   S +    +   +  +   ++ + F         A+
Sbjct: 53  VRAEYPGAAPETLDAEVTRLIEGAASRVPGVYLVRSASEEGNLRVIIEFNPDVDLVTAAN 112

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  V   L    +   +V        ++    +   +       S  +  Q    
Sbjct: 113 DVRDAVARVERDLPEGVENLTIVKADADAEPVLQLAVSSQSLAIDT--LSRVVEEQIEPA 170

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   E              +    DP RL       + ++                    
Sbjct: 171 LIAVEGVADITLFGSRERVMLVRIDPLRLAAHQLAVSDLATLLRTAPFDAPAGSLESPNQ 230

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           +        V     +  + L                                  +I   
Sbjct: 231 QVLVRANASVTSPEALRALQL------------------------RPGLALGEVADISYS 266

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A       L    +       +AQ +     +    +   L      +++ +V +    
Sbjct: 267 PAKATSYVRLNGRTVISLGIVRQAQSNTVAISKGVRAVVDRLNRDGADLQITVVSDDAT- 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
              G+ +   G+ A+   +V+ V+ + +   +  LV   +I + +I TLA + LLG ++ 
Sbjct: 326 FISGAIAEVLGSLALAVLIVVAVVGIFLGQWRATLVPVVAIPVALIGTLAAIWLLGYSVN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  ++L  G+ VD  I+V E I+    +      +  +G    +  +  +  T +  
Sbjct: 386 LLTLLALLLATGMVVDDAIVVLENIQRRRSQGLGPRAAAVLGTREVFFAVVATTATLVSV 445

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDIN 526
            V + F     G     F   M +++ IS F A+++   +   +   K      + +   
Sbjct: 446 FVPISFLPSAAGRLFAEFGFVMAIAVAISSFVALTLGPMIASRLPEEKPPGPVWRKLSHW 505

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                     C+A+   RA +      +L           +      + +G + + +   
Sbjct: 506 GERAAGTYARCLAMALRRAWWVVAACGLLAGAAVWSYTQLNSELTPTEDRGLLSIRMEGP 565

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
             V L  +   LE         Q+    +N          +       L    K
Sbjct: 566 SGVGLGYIDRQLEQALAIVTPLQDEGLVQNIFTITGRYDLNRAEIVAPLTDWSK 619



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 51/142 (35%), Gaps = 6/142 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
               +W   L  +  + + +  TL    L G   NL  + A+L   G  V+D +VV + +
Sbjct: 351 IFLGQWRATLVPVVAIPVALIGTLAAIWLLGYSVNLLTLLALLLATGMVVDDAIVVLENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPM 801
               +  +  +  R        E     V T+       +P++    +       F   M
Sbjct: 411 ---QRRRSQGLGPRAAAVLGTREVFFAVVATTATLVSVFVPISFLPSAAGRLFAEFGFVM 467

Query: 802 AFGIVVAASSSIFIAAPILLFI 823
           A  + +++  ++ +   I   +
Sbjct: 468 AIAVAISSFVALTLGPMIASRL 489



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 53/145 (36%), Gaps = 6/145 (4%)

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               A   I T+   +   +    L G   N+ +   +L L+G    + +++ +      +
Sbjct: 876  ITSAAVVIITVPFGLAAAVFAMTLSGTSLNIYSQIGLLLLVGVMAKNSILMVEFA---DQ 932

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
            L     S  +   ++    L   + T  +  +  LP+ +    G     S    +  G+ 
Sbjct: 933  LRDAGRSVLEAAQEAAVTRLRPIMMTMASTVLGALPLVLGSGPGAESRASIGWVIFGGLS 992

Query: 807  VAASSSIFIAAPILLFIYDWRAKNA 831
            +A+  ++F+   + L +  +    A
Sbjct: 993  LASLFTLFLTPVVYLGLARFAKPRA 1017


>gi|84387905|ref|ZP_00990919.1| putative silver efflux pump [Vibrio splendidus 12B01]
 gi|84377251|gb|EAP94120.1| putative silver efflux pump [Vibrio splendidus 12B01]
          Length = 1047

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/644 (11%), Positives = 174/644 (27%), Gaps = 39/644 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N +LV++ ++    G L ++ N    + +D  P       I                  
Sbjct: 11  SNRFLVLVATVAIVFGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    K  L    T                     E           ++   E   +
Sbjct: 118 APNLPSSAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAELRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  +            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYDLTLQQVNKAIQDGNQETGASVVEIAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P        +
Sbjct: 237 LTSIEDI------------------QSLPLKVTDKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I++     A L+AG       +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIDSVKSKLAELQAGLPDGVEIVATYDRSTLIDSAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V +V  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILGAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S I   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLIIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR   +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGNVLPEHKNPVNRSLVAMY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    ++     + I++     +       G  +      G  + +    P       
Sbjct: 519 KPLLNLSLKYPKVMIVIALGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L       I            +       D    T +  +++
Sbjct: 579 RELLQQTNKLIKTIPEVETTWGKIGRAETATDPAPLTMIETVIQ 622



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 78/267 (29%), Gaps = 20/267 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L       + LS V           I  +N        V ++ +   S        +  
Sbjct: 780  PLVTPNGARIALSDVADIRYEDGPPMIKTENARPNGWVFVDIEGRDLGSYVAEAQKVVTD 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + +                 +    L    +V + I+ I +L+Y+  R         +  
Sbjct: 840  QIVLPAGYSLAWSGQYEYMERAKERL--SVVVPITIAIIMLLLYLSFR---RVGEVMMIM 894

Query: 700  LILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR----------KN 747
            L L +    G     +    F++      + L G +V   V++   +           + 
Sbjct: 895  LTLPLAMVGGLWLMHVLNYNFSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHYKKLDAEQ 954

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
             +    S    D I +     +   + T +   I ++P+      G  V+   A PM  G
Sbjct: 955  NQQALQSEDLTDAIREGAGLRVRPVMMTVLTVIIGLIPIMYGEGTGSEVMQRIAAPMIGG 1014

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  A   ++ +   I          ++
Sbjct: 1015 MASALLLTLLVLPAIFKLWKQREITHS 1041



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 66/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++    ++   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVIDSVKSKLAELQAGLPDGVEIVATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + +      F    +L    +L + I          G
Sbjct: 326 DRSTLIDSAVENLWKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILGAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLIIITLSFVPVFALEGQEGKMFS 469


>gi|218676293|ref|YP_002395112.1| Cation efflux system protein cusA [Vibrio splendidus LGP32]
 gi|218324561|emb|CAV26070.1| Cation efflux system protein cusA [Vibrio splendidus LGP32]
          Length = 1047

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/644 (11%), Positives = 174/644 (27%), Gaps = 39/644 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N +LV++ ++    G L ++ N    + +D  P       I                  
Sbjct: 11  SNRFLVLVATVAIVFGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    K  L    T                     E           ++   E   +
Sbjct: 118 APNLPSSAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAELRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  +            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYDLTLQQVNKAIQDGNQETGASVVEIAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P        +
Sbjct: 237 LTSIEDI------------------QSLPLKVTDKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I++     A L+AG       +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIDSVKSKLAELQAGLPDGVEIVATYDRSTLIDSAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V +V  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILGAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S I   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLIIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR   +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGNVLPEHKNPVNRSLVAMY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    ++     + I++     +       G  +      G  + +    P       
Sbjct: 519 KPLLNLSLKYPKVMIVIALGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L       I            +       D    T +  +++
Sbjct: 579 RELLQQTNKLIKTIPEVETTWGKIGRAETATDPAPLTMIETVIQ 622



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 78/267 (29%), Gaps = 20/267 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L       + LS V           I  +N        V ++ +   S        +  
Sbjct: 780  PLVTPNGARIALSDVADIRYEDGPPMIKTENARPNGWVFVDIEGRDLGSYVAEAQKVVTD 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + +                 +    L    +V + I+ I +L+Y+  R         +  
Sbjct: 840  QIVLPAGYSLAWSGQYEYMERAKERL--SVVVPITIAIIMLLLYLSFR---RVGEVMMIM 894

Query: 700  LILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR----------KN 747
            L L +    G     +    F++      + L G +V   V++   +           + 
Sbjct: 895  LTLPLAMVGGLWLMHILNYNFSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHYKKLDAEE 954

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
             +    S    D I +     +   + T +   I ++P+      G  V+   A PM  G
Sbjct: 955  NQQTLQSEDLTDAIREGAGLRVRPVMMTVLTVIIGLIPIMYGEGTGSEVMQRIAAPMIGG 1014

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNA 831
            +  A   ++ +   I          ++
Sbjct: 1015 MASALLLTLLVLPAIFKLWKQREITHS 1041



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 66/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++    ++   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVIDSVKSKLAELQAGLPDGVEIVATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + +      F    +L    +L + I          G
Sbjct: 326 DRSTLIDSAVENLWKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILGAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLIIITLSFVPVFALEGQEGKMFS 469


>gi|213854210|ref|ZP_03382742.1| multidrug efflux system subunit MdtB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 942

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 48/432 (11%), Positives = 125/432 (28%), Gaps = 24/432 (5%)

Query: 98  ITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS 157
           +TL F  +   +    +V   +    + L  D     + +        +++   +     
Sbjct: 2   VTLQFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPIYSKVNPADPPIMT-LAVTSNAM 60

Query: 158 HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKV 217
              +    +  +   +I           +      +  + +   +  L  T+  +     
Sbjct: 61  PMTQVEDMVETRVAQKISQVSGVGLVTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAIT 120

Query: 218 LPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEM 277
                               G                   +AN   ++      +     
Sbjct: 121 --------------------GANVNSAKGSLDGPERAVTLSANDQMQSADEYRKLIIAYQ 160

Query: 278 GARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
                       + +       G               +   +   T ++   +   L  
Sbjct: 161 NGAPVRLGDVATVEQGAENSWLGAWANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTE 220

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
                    V          S    +    +   LV++++++ +      ++   ++ L+
Sbjct: 221 SLPKSVKVTVLSDRTTNIRASVRDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLS 280

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           +I T A++  L  ++   ++  + +  G  VD  I+V E I     K +    +   G  
Sbjct: 281 LIGTFAVMVFLDFSINNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAG 340

Query: 458 RAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
               TI     + +   + L F G   G   R FA+T+ ++ILIS   ++++   M   +
Sbjct: 341 EIGFTIISLTFSLIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARM 400

Query: 515 IRYKKMKSIDIN 526
           +  + ++  +  
Sbjct: 401 LSRQSLRKQNRF 412



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 62/164 (37%), Gaps = 7/164 (4%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + + I+ + M+IY+++R      +     + L +  T           N   + A+    
Sbjct: 249 LMLAIALVVMIIYLFLR-NIPATIIPGVAVPLSLIGTFAVMVFLDFSINNLTLMALTIAT 307

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +VV + +    +             K   E     +  + +    ++P+   G
Sbjct: 308 GFVVDDAIVVIENI---SRYIEKGEKPLAAALKGAGEIGFTIISLTFSLIAVLIPLLFMG 364

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G +   FA+ +A  I+++A  S+ +   +   +   ++   
Sbjct: 365 DIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSRQSLRK 408


>gi|254439339|ref|ZP_05052833.1| RND transporter, HAE1/HME family, permease protein [Octadecabacter
           antarcticus 307]
 gi|198254785|gb|EDY79099.1| RND transporter, HAE1/HME family, permease protein [Octadecabacter
           antarcticus 307]
          Length = 1040

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 70/550 (12%), Positives = 157/550 (28%), Gaps = 40/550 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   V++ ++I  + +     + +P+      P  +P   +S GLD          +   
Sbjct: 10  SRSRVVVMALILVLTVGAYAYSAIPKEADPEVP--LPFFYVSTGLD---------GISPT 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D     L+    E    +           +    I L F      +   DKV        
Sbjct: 59  DAERLLLEPMETE-FGSITGLQRMNSDASEGFASIQLEFNPGGDNQEALDKVREAADRAQ 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           + L  D +   +         I+ +  +         E +        ++I   +  ++ 
Sbjct: 118 NDLPDDARDITITEINTALFPIITAILSGPVPERTLNELAET----LQEEIEGLQGVLEV 173

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
               +    L    DP+  +    +  ++                          N  L+
Sbjct: 174 DIGGQRFEFLEVLIDPTVFQTYNLSFDELIGQI--------------------QRNNILI 213

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                 +G            +  + V+ +     G           I +          +
Sbjct: 214 AAGAIETGSGRIVLKVPGLIENLEDVMSMPVKVRGNAVVTFGDVATIRRTFEDPSSFARI 273

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                     + ++  +   T++    L   L+            +    +     S  +
Sbjct: 274 NGQPALALEITKRSGSNIIETVDAVKALVDELQDEWPDSIEITYLQDQSKSVKDLLSDLE 333

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   LV+IV+ + +      ++   SI    +  +  L  +G T+ +  +  ++L 
Sbjct: 334 ANVIAAVILVMIVIVLALGTR-SAILVGLSIPGAFLAGVIALWTMGYTMNIVVLFSLILV 392

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+ VD  I+  E    + ++  S   +      R    I  S  T L     L F+ G 
Sbjct: 393 VGMLVDGAIVTTELADRKLQEGASPKDAYSFAAKRMSWPIIASTATTLSVFFPLLFWTGM 452

Query: 484 ---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
               ++   IT+ L++  S+F A+  +  +   I +     +     L            
Sbjct: 453 IGEFMKFLPITVILTLSASLFMALIFIPVVGGLIGKRAPQTAKSKAALHAAEFGDPRDMT 512

Query: 541 QFMRARFWGV 550
            F  A    +
Sbjct: 513 GFTGAYVRLL 522



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 106/297 (35%), Gaps = 14/297 (4%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I  ++     +    + +     +L   GL   ++    + + V  N  V    V +   
Sbjct: 203 IGQIQRNNILIAAGAIETGSGRIVLKVPGLIENLEDVMSMPVKVRGNAVVTFGDVATIRR 262

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           + +      +        L   +    + +     ++ +  ++ +  P S          
Sbjct: 263 TFEDPSSFARINGQPALALEITKRSGSNIIETVDAVKALVDELQDEWPDSIEITYLQDQS 322

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIE 717
           K  ++L+      VI + I ++I I +      A+  +  L +      G  AL   G  
Sbjct: 323 KSVKDLLSDLEANVIAAVILVMIVIVLALGTRSAI--LVGLSIPGAFLAGVIALWTMGYT 380

Query: 718 FNLTAVAAVLTLIGYSVNDKVV---VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            N+  + +++ ++G  V+  +V   + DR            S +D    +  + +   + 
Sbjct: 381 MNIVVLFSLILVVGMLVDGAIVTTELADR------KLQEGASPKDAYSFA-AKRMSWPII 433

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            S A  +SV    ++   +IG F   +   +++  S+S+F+A   +  +     K A
Sbjct: 434 ASTATTLSVFFPLLFWTGMIGEFMKFLPITVILTLSASLFMALIFIPVVGGLIGKRA 490



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 65/177 (36%), Gaps = 5/177 (2%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           ++  +  ++      +     +  +   +        +  +     +   E +   +   
Sbjct: 802 DEKRVTSIEANVAPDILVNDQVIALTAALNAADLPDGVVFSFAGEAEDQAESMIFLVGAF 861

Query: 674 IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIG 731
           + +   M + + ++F  ++ A   ++ +I  I   L    + G  F +      V+ L G
Sbjct: 862 VTAIFLMFVILVLQFNSFFQAFVVMSAIIFSIAGVLLGLLVTGRPFGIVMGGIGVIALAG 921

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             VN+ +V+ D       L  +  S  +   ++  + L   V TS+   + ++PM +
Sbjct: 922 IVVNNNIVLIDTYND---LKKSGQSPLEAALRTGAQRLRPVVLTSVTTALGLMPMVI 975


>gi|160902577|ref|YP_001568158.1| protein-export membrane protein SecD [Petrotoga mobilis SJ95]
 gi|160360221|gb|ABX31835.1| protein-export membrane protein SecD [Petrotoga mobilis SJ95]
          Length = 472

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 80/193 (41%), Gaps = 4/193 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      V  K   +           +GP + R+++   I   II  I ++IY+ I 
Sbjct: 260 ESMEEAQNIAVLIKSGNLPVDLVKYQERTLGPTLGRDIVTTIINAGIIGLIIVMIYMIIF 319

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           ++W   + A   LI +    +G  +  G    L  +A ++   G +V+  +++Y+R+++ 
Sbjct: 320 YRW-MGVIADIALIYNTFLLMGILSWTGAILTLPGIAGIILTFGTTVDGNIIIYERIKEE 378

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           +++          +    N+        ++   ++ L +       I  FA+ +  G++ 
Sbjct: 379 LRI---GRPPLTAVKFGFNKVFSTIFDANITTILAGLVLFFVTSGSIRGFAVTLIIGVLG 435

Query: 808 AASSSIFIAAPIL 820
           A  +++ ++  +L
Sbjct: 436 AMFTNLVVSRLLL 448



 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 116/385 (30%), Positives = 211/385 (54%), Gaps = 27/385 (7%)

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSH---RILIQLPGEQDPSRLRQLLGTTAK 211
             S  ++  + ++R+R+D  G +E+ +  + S    R+ +++PG  D  R  +L+G+  K
Sbjct: 65  NTSEVVDNVITVLRRRMDNAGYTEAIVSEVVSGGESRVRVEIPGISDTQRAEELIGSKGK 124

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDG------------------------NQYLVEDKV 247
           + F +VL            R                                    +   
Sbjct: 125 LYFAEVLEVVESTTTPEITRNRTIQINGEEIEMYSYVKDSNNPNLWYRVKNVFEFGDAPF 184

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           +I+G+ +  A A+ + +    VV+++F   G ++F   T + + + +A++LD  V+ APV
Sbjct: 185 QITGLDVTDAVASLNSQGAGFVVNLNFSNEGRQKFELATANLVNERIAIILDDEVIIAPV 244

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           + + I  G+A+ISG  ++E A  +A ++++G+LP+ L   +ER +G  LG D +     A
Sbjct: 245 VRERISQGRAEISGIESMEEAQNIAVLIKSGNLPVDLVKYQERTLGPTLGRDIVTTIINA 304

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + GL++++++MI+ Y   G++AD ++  N  L + +LS  GA LTLP IAGI+L  G  
Sbjct: 305 GIIGLIIVMIYMIIFYRWMGVIADIALIYNTFLLMGILSWTGAILTLPGIAGIILTFGTT 364

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD NI++ ERI+EE R  +    ++  GF++ +STIFD+NIT ++A +VLFF   G++RG
Sbjct: 365 VDGNIIIYERIKEELRIGRPPLTAVKFGFNKVFSTIFDANITTILAGLVLFFVTSGSIRG 424

Query: 488 FAITMGLSILISMFTAISIVRAMMI 512
           FA+T+ + +L +MFT + + R ++ 
Sbjct: 425 FAVTLIIGVLGAMFTNLVVSRLLLE 449


>gi|32265721|ref|NP_859753.1| hypothetical protein HH0222 [Helicobacter hepaticus ATCC 51449]
 gi|32261769|gb|AAP76819.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 1024

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 80/660 (12%), Positives = 175/660 (26%), Gaps = 45/660 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++    +L      + +     FP       +                   + V   
Sbjct: 10  ISTLMFAFAILFFGFLGVFKMPTSLFPDIDFPVAV---------VITAYPGASAEIVETK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        S  +  + + + F   +   +  + V   +  V  +L+  
Sbjct: 61  VTDKIEEAIMGIDGLKKVTSSSARNSSVVIVQFELEKPLSDAVNDVRDKVGTV--QLDSG 118

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            K+  +         I+      D+V S   E            +               
Sbjct: 119 VKRPAVYKFDSSSAPIISLFLTSDKVPSS--EMMRHAKDNIKPLLQKISGVGGVEMRGHR 176

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+     PS L +   T   +S    L N    G          +        D  +I
Sbjct: 177 ERQIRIFVSPSMLNKYGITYTDISNKVGLENLEVDGGKLIGTLSEWAITTDAQSADVSDI 236

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                        A          I   +               
Sbjct: 237 GNIRI------------------------AEGIRLADIATIEDGIEEDKTFASFNKTPGV 272

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  A  +     +    +   + + S    + +  +        + S  +    + 
Sbjct: 273 IFEVQKIAGANDISIADAVMKVLPQIESISPEYDIKVF-KDTTQNVRAAISSVEFDVLLG 331

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             L + V+F+ +      LV+  SI +++  T AL++  G +L + ++  + L IG+ +D
Sbjct: 332 VFLAVSVVFIFLRSATITLVSAISIPISIFGTFALMNFFGFSLNMLTLLAVALAIGIIID 391

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++         +   G      A   I    ++  I    +    G   +
Sbjct: 392 DAIVVIENIHKKLEHGMRKREAAYEGVREIGFALIAISAMLLSVFIPVGSMSGIVGRFFQ 451

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+  +I IS    I+I+  +   ++  K  K           L    +       R
Sbjct: 452 SFGITVAAAIGISYIVVITIIPMVSSIVVNPKHSKFYYRTEPFFKRLDAYYVKTLAFVLR 511

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
                I  +  I  + L     L                          + ++       
Sbjct: 512 NRVKVIVGIVGIFFLSLTLLAKLGMEFIISDDKS-EFQVFMETTPGTSMNAMKEKTNELQ 570

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           +      + +F      Q G    +T     +  ++      +  ++   +   I  +L 
Sbjct: 571 NIVMAHSDIDF---TTLQIGYDAQKTIFKAQIYARLKPKKERANKESQFKIMADIGEQLK 627



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 63/158 (39%), Gaps = 7/158 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +V V+ + + + + +   ++ +   +  + TL            +    F++ ++  ++ 
Sbjct: 851  LVAVLTAIVLIYLILAALYESFLQPVVIMMTLPFSFAGAFIALFVVQQPFSMFSLMGLMI 910

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G    +  ++ D   +  K      S  + +  +    L   + T++A    ++P+A+
Sbjct: 911  LMGLVGKNATLLIDVANEKRKE---GYSTDEALILAGESRLRPILMTTIAMVFGMIPLAI 967

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                G  +     I +  G++ +   S+ I   I  F+
Sbjct: 968  STGSGAGMKSPMGICIIGGLLFSMFLSLLIVPAIYRFL 1005



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 78/238 (32%), Gaps = 6/238 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     + L+ + +  + ++                   +    + ++    +  V  +I
Sbjct: 239 IRIAEGIRLADIATIEDGIEEDKTFASFNKTPGVIFEVQKIAGANDISIADAVMKVLPQI 298

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   I+  +     +   +       ++   +A+ +           L +  ++ +
Sbjct: 299 ESISPEYDIKVFKDTTQNVRAAISSVEFDVLLGVFLAVSVVFIFLRSATITLVSAISIPI 358

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T      FG   N+  + AV   IG  ++D +VV + +    K     +  R+   
Sbjct: 359 SIFGTFALMNFFGFSLNMLTLLAVALAIGIIIDDAIVVIENIH---KKLEHGMRKREAAY 415

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           + + E     +  S       +P+    G V     SF I +A  I ++    I I  
Sbjct: 416 EGVREIGFALIAISAMLLSVFIPVGSMSGIVGRFFQSFGITVAAAIGISYIVVITIIP 473


>gi|313206505|ref|YP_004045682.1| acriflavin resistance protein [Riemerella anatipestifer DSM 15868]
 gi|312445821|gb|ADQ82176.1| acriflavin resistance protein [Riemerella anatipestifer DSM 15868]
 gi|315023554|gb|EFT36558.1| acriflavin resistance protein [Riemerella anatipestifer RA-YM]
 gi|325336047|gb|ADZ12321.1| Cation/multidrug efflux pump [Riemerella anatipestifer RA-GD]
          Length = 1051

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/491 (10%), Positives = 135/491 (27%), Gaps = 27/491 (5%)

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +        V   +    ++  S L+          +  + + + F +    +   +   
Sbjct: 50  IYPGASPTEVENTVSKKIEDAVSALEGVKKIQTKSYESLSIVIIQFNNDVNTDFAMNDTQ 109

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + S L    K+  L   +  ++ +V      +   +   +    I ++   +   
Sbjct: 110 RKINAIRSNLPDGVKEPSLSQFSLSDLPVVSMGVTANLSENELYDL---IDQKIQPEFSR 166

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +         ++    DPS+L+    +  ++       N          R     
Sbjct: 167 ISGVAKVNIVGGQEREIRINLDPSKLQGYGLSIPQVVQIITASNLDFPTGNLQTRDNSTL 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +    E+  + +                                   +      
Sbjct: 227 IRLSGKIASVEELRNLTIASM--------------------NGINIKLSDVAEVQDTQKK 266

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEERNVGAD 355
           V     +            +   +     E     +  +            +        
Sbjct: 267 VEKIARINQQNTLLLQVQKQTDANAVTMSELVQKKMKVIEEQYKDQGLKINLANDTSVFT 326

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           L +         I   LV  V+   +   +  L+   +I  ++I T   ++L G +L L 
Sbjct: 327 LAAADSVLKDLLIAVALVAFVMLFFLHSFRNALIVMVAIPTSLIATFIGIALFGFSLNLM 386

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + L +G+ VD  I+V E I       ++   +   G      T+    +  ++  +
Sbjct: 387 SLLALSLVVGILVDDAIVVIENIHRHMEMGKNKVRAAYDGAKEIGFTVTAITLVIVVVFL 446

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +    G     +R F +T+ ++ ++S+  + ++V  +     + + +    I     + 
Sbjct: 447 PIALSSGLVSDIIRQFCVTVVIATMLSLLVSFTVVPWLFSRFGKLELISKDSIFGKVIYT 506

Query: 533 LIPDCIAIQFM 543
                      
Sbjct: 507 FEDGLTKFTHF 517



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 89/255 (34%), Gaps = 10/255 (3%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + +  +   ++   +  +E +   +        +              + Q ++ 
Sbjct: 245 ASMNGINIKLSDVAEVQDTQKKVEKIARINQQNTLLL-QVQKQTDANAVTMSELVQKKMK 303

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            + ++   + + ++   +T +     +  +++  ++ V + A  ML ++     +  AL 
Sbjct: 304 VIEEQYKDQGLKINLANDTSVFTLAAADSVLKDLLIAVALVAFVMLFFL---HSFRNALI 360

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  +   +  T    ALFG   NL ++ A+  ++G  V+D +VV + +    +      
Sbjct: 361 VMVAIPTSLIATFIGIALFGFSLNLMSLLALSLVVGILVDDAIVVIENIH---RHMEMGK 417

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSS 812
           +          E        ++   +  LP+A+  G    +I  F + +    +++   S
Sbjct: 418 NKVRAAYDGAKEIGFTVTAITLVIVVVFLPIALSSGLVSDIIRQFCVTVVIATMLSLLVS 477

Query: 813 IFIAAPILLFIYDWR 827
             +   +        
Sbjct: 478 FTVVPWLFSRFGKLE 492



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 66/166 (39%), Gaps = 7/166 (4%)

Query: 671  VGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              ++ + + + +I + +   +      + ++ L     L   AL     N+  +  ++ L
Sbjct: 864  YALLAAILLVYMIMVVLYDDFVKPFIVLFSIPLSFIGALWALALTNQSLNIFTILGIIML 923

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG    + +++ D             +  D + ++ +  L   + T++A    +LP+A+ 
Sbjct: 924  IGLVAKNAILLVDFAN---HRLEQGETIEDALIQANHARLRPILMTTIAMVFGMLPIAMA 980

Query: 790  GG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G    +    AI +  G++ +   ++ I   + L +     K A+
Sbjct: 981  SGAAAEMNNGLAIVIIGGLLSSLFLTLVIVPVVYLIVVKLERKLAK 1026


>gi|332828913|gb|EGK01596.1| hypothetical protein HMPREF9455_02128 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 1032

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 80/663 (12%), Positives = 192/663 (28%), Gaps = 51/663 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  +V++ +++  IG      N      +D FP       +           ++ E + 
Sbjct: 11  NNRLVVLIGAVLLLIGGFYTAKN----MEIDVFPDLNAPTVV-----------IMTEANG 55

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            VT  L 
Sbjct: 56  MAPEEVERLVSFPIETAVNGATDVRRVRSSSTTGFSVVWVEFDWGTDIYKARQIVTEKLT 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  +  +  L   +     +++     D      ++           ++  +   
Sbjct: 116 ALGDALPENIGQPTLGPQSSILGEVMIIGLTSDST--SLLDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +     DP R++    T  ++       N +  G +             
Sbjct: 174 AQVTVIGGDIEEYQILIDPGRMKHYGITLDEVLQVTRNMNQNASGGILYEYGNEYIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
               D  E+                      +           +V    IG     +   
Sbjct: 234 LQSADVGELG------------------KAVVKKVGESPILISDVAEIKIGAKTPKLGIA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              T P +   +       +   + +    LA + +     IK++    R       S +
Sbjct: 276 SEKTKPAVLITVTKQPNTNTIELSEKLDVSLAELQKNIPADIKISTDIFRQERFINNSIN 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +    A  V+I+LF+ ++ G+   ++  ++ L+++ ++  L L+G T+   S+ G+
Sbjct: 336 NVQKSLYEGAIFVVIILFIFLMNGRTTFISLMALPLSLLTSILALKLMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+        SV   +          I +S +  + 
Sbjct: 396 AIAIGSLVDDAIIDVENVFKHLRENRQKPKEEQLSVLTVVFEASKEVRMPILNSTLIIVT 455

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDIN 526
           + + LFF     G  +    I   +++  S   A+++   +  ++    +  K +   + 
Sbjct: 456 SFIPLFFLSGMEGRMLVPLGIAFIVALFASTVVALTVTPVLCSYLLGNNKKNKEEKEPVF 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +    +    +     + +       +L     I              +G   + +   
Sbjct: 516 VVKLKAVYEKSLHWALEKQKIVLGVTGVLLVSAIIIFFTFGRNFLPPFNEGSFTVTINTL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   +S            R +         T  +E          
Sbjct: 576 PGISLEESNKVGIMAEQAMLSVPEIQTVGRKTGRAELDEHSFGVNTSEIEAPFMLKDRSQ 635

Query: 647 PLS 649
              
Sbjct: 636 EDM 638



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 76/200 (38%), Gaps = 10/200 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      L  ++K I   + +ST    +      S   ++K +    I  + +L    + 
Sbjct: 299 SEKLDVSLAELQKNIPADIKISTDIFRQERFINNSINNVQKSLYEGAIFVVIILFIFLMN 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDR 743
            +  F   ++  L L +  ++    L G+  N  ++  +   IG  V+D ++    V+  
Sbjct: 359 GRTTF--ISLMALPLSLLTSILALKLMGLTINTMSLGGMAIAIGSLVDDAIIDVENVFKH 416

Query: 744 MRKNMKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAI 799
           +R+N +      +S   ++ ++  E     + +++    S +P+    G    ++    I
Sbjct: 417 LRENRQKPKEEQLSVLTVVFEASKEVRMPILNSTLIIVTSFIPLFFLSGMEGRMLVPLGI 476

Query: 800 PMAFGIVVAASSSIFIAAPI 819
                +  +   ++ +   +
Sbjct: 477 AFIVALFASTVVALTVTPVL 496



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/233 (12%), Positives = 87/233 (37%), Gaps = 10/233 (4%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                        + +     D   ++ V ++ +K   EI              +  +   
Sbjct: 803  PNTVNRENAQRKIVVSANVADRDLRSVVNDIREKIDGEITLPEGYHIEYGGQFESEQAAS 862

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI--EFNLTAVA 724
            R  ++  + + + + + ++ +F+      A+  L L +    G +A+     E ++ A+ 
Sbjct: 863  RILLIVSVFAIMIIFLLLFNQFR-NVTQSAVILLNLPLALIGGVYAILFTSGEISIPAII 921

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
              + L G +  + +++         L     S    I +   + L   + T++ + ++++
Sbjct: 922  GFIALFGIATRNGILLMAHYND---LGNHGYSVNKSILQGSLDRLNPILMTALCSGLALI 978

Query: 785  PMAV---WGGSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            P+A+     G+ I S  A  +  G++ +   ++++   I   + + +     +
Sbjct: 979  PLAIQGDLPGNEIQSPMAKVILGGLLTSTLLNMYVVPIIYRMLKNRKEVKQEV 1031


>gi|319949688|ref|ZP_08023721.1| integral membrane protein MmpL5 [Dietzia cinnamea P4]
 gi|319436650|gb|EFV91737.1| integral membrane protein MmpL5 [Dietzia cinnamea P4]
          Length = 822

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 86/627 (13%), Positives = 186/627 (29%), Gaps = 57/627 (9%)

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
           G  +    A        P       +       E      G    V      L       
Sbjct: 67  GDVVVSYHAPEGTSVDDPAFQEPIRQSLESIRTENPDRVTGVTSFVFNQSPALVNRDAGI 126

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
           A+ S +        ++    +   +    +   +  ++        G D+       I  
Sbjct: 127 AVASIQIAGEAEEILQNFRAIEDQIPVEGIETDIAGLQPVAGALQDGMDADLVRAELIAL 186

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLA 427
            LV ++L ++        +      L ++ +L  L LL     + S A     ++G+GLA
Sbjct: 187 PLVFLLLIVVFGGVVAAFLPVAVGVLTILGSLGALHLLSLVTPVNSFAQNVVTLIGLGLA 246

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           +D  + V  R REE  +      ++    + A  T+  S +   +    L  F    ++ 
Sbjct: 247 IDYGLFVVSRFREEMAEGYPPDAAVRRSVATAGRTVVFSAVMVGVTLSGLLVFPQDFLKS 306

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI----QFM 543
            A     +++++   +++++ A+++ +        I      R     +         F 
Sbjct: 307 VAYGAIAAVILAAALSVTLLPAVLMLLGHRVDALGIKRMQRHRTREEVENGLFGRVADFS 366

Query: 544 RARFWGVG------------------------ISILFSICSICLLFTHGLNYGIDFKGGI 579
             R   V                           +     +      +  N+       +
Sbjct: 367 MKRPVAVAIPVVVVLVALIIPFSGVKFGGINETYLPPDNPTRVAQEEYDQNFPGTRTDPV 426

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF-----LVRLQYQPGDSVAQTRV 634
           +L VL +    LS +RS           FQ             +V LQ    D  A T  
Sbjct: 427 KLVVLGSDGATLSQIRSAANEAPGLTGPFQFARSGGQDSQGREVVVLQAGVVDRNAATET 486

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFA 693
           +E ++           +     +       LI      V+   +A  + +++ F      
Sbjct: 487 VEYLQSFPIPAGTEVFVGGNPAMEKDSVDALIAGLPWFVLYVLVATTLLMFLAFGSLVLP 546

Query: 694 LGAITTLILDITKTLGFFALFGI-------------EFNLTAVAAVLTLI-GYSVNDKVV 739
           + A    +L +  TLG      +                   V  ++ +I G S + +V 
Sbjct: 547 IKAAIMNMLGLGATLGILTWIFVDGHLSGLLGFTPGPLTSPVVVLLMAIIYGLSTDYEVF 606

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-GSVIGSFA 798
           +  RM +     +      + I   + +T GR + ++    I V     +    ++   A
Sbjct: 607 LVSRMVE---ARSRGARTAEAIRSGVAQT-GRIITSAALILIVVTGAFAFSEIVMMKYIA 662

Query: 799 IPMAFGIVVA-ASSSIFIAAPILLFIY 824
             M   +++      + +   ++  + 
Sbjct: 663 FGMIAALIIDATVIRMLLVPAVMQMLG 689



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 89/257 (34%), Gaps = 9/257 (3%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                 +          +  R    +  + + S    + +    V      G++    + 
Sbjct: 84  PAFQEPIRQSLESIRTENPDRVTGVTSFVFNQSPALVNRDAGIAVASIQIAGEAEEILQN 143

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
              ++ +I      + I   + V   +   +    +   +I+   + + + + F    A 
Sbjct: 144 FRAIEDQIPVEGIETDIAGLQPVAGALQDGMDADLVRAELIALPLVFLLLIVVFGGVVAA 203

Query: 695 GAITTL-ILDITKTLGFFALFGIEFNLTAVAA--VLTLIGYS--VNDKVVVYDRMRKNMK 749
                + +L I  +LG   L  +        A  V+TLIG    ++  + V  R R+ M 
Sbjct: 204 FLPVAVGVLTILGSLGALHLLSL-VTPVNSFAQNVVTLIGLGLAIDYGLFVVSRFREEMA 262

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                      + +S+       V++++   +++  + V+    + S A      +++AA
Sbjct: 263 E---GYPPDAAVRRSVATAGRTVVFSAVMVGVTLSGLLVFPQDFLKSVAYGAIAAVILAA 319

Query: 810 SSSIFIAAPILLFIYDW 826
           + S+ +   +L+ +   
Sbjct: 320 ALSVTLLPAVLMLLGHR 336



 Score = 43.9 bits (101), Expect = 0.12,   Method: Composition-based stats.
 Identities = 55/539 (10%), Positives = 135/539 (25%), Gaps = 44/539 (8%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           ++   +I   G ++A    +   +L    S              G  HL+        VN
Sbjct: 188 LVFLLLIVVFGGVVAAFLPVAVGVLTILGSL-------------GALHLL---SLVTPVN 231

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
            F Q     +       G+ +     + ++     A+    +     V   +      + 
Sbjct: 232 SFAQNVVTLI-----GLGLAIDYGLFVVSRFREEMAEGYPPDAA---VRRSVATAGRTVV 283

Query: 128 VDPKKNLLVTTT---EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG-ISESTIQR 183
                  +  +      +  +          +  A   S+ ++   +  +G   ++   +
Sbjct: 284 FSAVMVGVTLSGLLVFPQDFLKSVAYGAIAAVILAAALSVTLLPAVLMLLGHRVDALGIK 343

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   +        R+              V+         F            YL 
Sbjct: 344 RMQRHRTREEVENGLFGRVADFSMKRPVAVAIPVVVVLVALIIPFSG-VKFGGINETYLP 402

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
            D                       +V +  D     +      +  G            
Sbjct: 403 PDNPTRVAQEEYDQNFPGTRTDPVKLVVLGSDGATLSQIRSAANEAPGLTGPFQFARSGG 462

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 + +      +  N   ET   L +        + +         +     +   
Sbjct: 463 QDSQGREVVVLQAGVVDRNAATETVEYLQSFPIPAGTEVFVGGNPAMEKDSVDALIAGLP 522

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI--- 420
                V     +++F+        + A     L +  TL +L+ +     L  + G    
Sbjct: 523 WFVLYVLVATTLLMFLAFGSLVLPIKAAIMNMLGLGATLGILTWIFVDGHLSGLLGFTPG 582

Query: 421 -----------VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
                       +  GL+ D  + +  R+ E   +      ++  G ++    I  + + 
Sbjct: 583 PLTSPVVVLLMAIIYGLSTDYEVFLVSRMVEARSRGARTAEAIRSGVAQTGRIITSAALI 642

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILIS-MFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ T    F     ++  A  M  +++I      + +V A+M  +          +  
Sbjct: 643 LIVVTGAFAFSEIVMMKYIAFGMIAALIIDATVIRMLLVPAVMQMLGTDNWWAPRWMKR 701


>gi|182412331|ref|YP_001817397.1| acriflavin resistance protein [Opitutus terrae PB90-1]
 gi|177839545|gb|ACB73797.1| acriflavin resistance protein [Opitutus terrae PB90-1]
          Length = 1020

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 81/669 (12%), Positives = 183/669 (27%), Gaps = 50/669 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+ + +I++  +  +G+         +    R PS                   +    
Sbjct: 9   RNSQFTLIVFVCLIALGVTSFRSIPRMEDPAMRVPSFS--------------VVAIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    ++    L        +++     +TL F      E   D+V   +  
Sbjct: 55  NATDIEQLVARPLEDALKELDDIDKLRATVKDGFAYLTLDFTWGTDPEEKYDEVLRQVNV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL     +  +       ++++             ++   + +R+R       +   
Sbjct: 115 ERPKLPSGVVEVDVRKWQTTNVAMMQVALVSPDASYARLQDLADALRKR---FERVDGVR 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         Q+    D  RL QL     ++                         G   
Sbjct: 172 QARRHAFPEKQVRVSLDIDRLTQLRIPLGQIVNAL--------------------QGANV 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +      +G        + +      V             +     ++      +    
Sbjct: 212 SIAGGSVEAGDRRFNIKTSGNYADLDEVRMTPIAGDAGAVVYLKDVADVRWTTEDLETFG 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +AQ + +   +         R+         +              
Sbjct: 272 RYNGERAVFVTVRPRAQQNLSVLSQALRTEVEAFRSSLAGDVRLEIGWDQSQNVERRLGR 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +     +    L++L ++ L  +  ++   SI L++ + +A L   G +L   SI G V
Sbjct: 332 LQED--FLFAFALVLLTVLPLGLRASVLVMLSIPLSLAMGVAALYFTGFSLNQLSIVGFV 389

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +GL VD +I+V E I    R       +      +    +  +  T L A + L    
Sbjct: 390 IALGLLVDDSIVVVENIARFRRMGTPPIEAAVRATEQIAVAVAGTTATLLFAFLPLLMLP 449

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--------IDINPLSR 530
           GG    +R   + +  ++L SM  A++I+  +    +R  +                   
Sbjct: 450 GGPGQYIRSLPVAVVYTVLASMVVALTIIPLLASLTLRGNEKPEGNLLLRLLHRGIESGY 509

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             ++  C+  + +      + I    ++                F   I++   A+    
Sbjct: 510 RPVLHWCMQHRGITLGAAALLIVGSLALVPRIGFSLFPKAGLPQFLVQIEMEEGASVAAT 569

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +V R     L         F    +   ++ Y      A+  V E+           + 
Sbjct: 570 DAVARRVEALLAQRPEVANYFTTVGDSNPQIYYNEVPQAAKASVAELFVSLKVANSESNP 629

Query: 651 IQNTEIVGP 659
               E+   
Sbjct: 630 RFFDELRSE 638



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 17/160 (10%), Positives = 56/160 (35%), Gaps = 7/160 (4%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           + +   +L+ + +      ++  + ++ L +   +      G   N  ++   +  +G  
Sbjct: 337 LFAFALVLLTV-LPLGLRASVLVMLSIPLSLAMGVAALYFTGFSLNQLSIVGFVIALGLL 395

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+D +VV + +    +         +   ++  +       T+     + LP+ +  G  
Sbjct: 396 VDDSIVVVENI---ARFRRMGTPPIEAAVRATEQIAVAVAGTTATLLFAFLPLLMLPGGP 452

Query: 794 ---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I S  + + + ++ +   ++ I   +         K 
Sbjct: 453 GQYIRSLPVAVVYTVLASMVVALTIIPLLASLTLRGNEKP 492



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 62/521 (11%), Positives = 133/521 (25%), Gaps = 30/521 (5%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M++    +   +++    L +              P  + +  +  G            V
Sbjct: 517  MQHRGITLGAAALLIVGSLALVPRIGFSLFPKAGLPQFLVQIEMEEG----------ASV 566

Query: 61   DEDDFVNGFLQMYSD---ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
               D V   ++       E+ ++    G     +             +         V+L
Sbjct: 567  AATDAVARRVEALLAQRPEVANYFTTVGDSNPQIYYN------EVPQAAKASVAELFVSL 620

Query: 118  FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +    S       +            IV+ +      I   I   +       +   I+
Sbjct: 621  KVANSESN-PRFFDELRSEVAKLPGAQIVVKELENGPPIEAPIAVRVFAE----NIDQIA 675

Query: 178  ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
            E         R +       +P R+R+       +                         
Sbjct: 676  ELAANVERVLRGIPGTHSITNPVRIRRTDLRL--VIDKPKAALLGVPEIEIDRAVRLAFG 733

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            G       + +     +  A    +  T +    I                 +    A  
Sbjct: 734  GLDVSRFREADGDEYDIQLALPRGERATLENWGRIQVQSRSGAYLPLAQLARLQFESAPP 793

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +  R                      T  T   L  +        +     E    +  G
Sbjct: 794  VIQRFNRERSATVTALVADGFNVDQLTRRTGRELERLSWPTGTRWEFGGEVESRSESFGG 853

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
              S       I A  +L +L +     +   +    I L VI  L  L L G +L+  + 
Sbjct: 854  LGSAV----VIAAFGILAILVLEFRSFRGTAIVASVIPLGVIGGLLALWLTGYSLSFTAA 909

Query: 418  AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             G V  IG+   ++IL+ +   +   +   +  +++      +  +  + +TAL A   L
Sbjct: 910  IGFVALIGIETKNSILLVDFTNQLRAQGVGLKEAIERAGEIRFLPVVLTTLTALGALAPL 969

Query: 478  FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
                 G     AI +   ++ S+  +  +   +   +    
Sbjct: 970  ALQRSGLYSPLAIVIMGGLISSLLLSRLVTPVLYSLMPPPN 1010



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 46/109 (42%), Gaps = 6/109 (5%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTL 729
            V+I+A  +L  + + F+ +    AI   ++ +    G  AL   G   + TA    + L
Sbjct: 857 AVVIAAFGILAILVLEFRSFRG-TAIVASVIPLGVIGGLLALWLTGYSLSFTAAIGFVAL 915

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           IG    + +++ D      +L    +  ++ I+++        V T++ 
Sbjct: 916 IGIETKNSILLVDF---TNQLRAQGVGLKEAIERAGEIRFLPVVLTTLT 961


>gi|221217940|ref|ZP_03589407.1| protein-export membrane protein SecD [Borrelia burgdorferi 72a]
 gi|224533322|ref|ZP_03673916.1| protein-export membrane protein SecD [Borrelia burgdorferi
           CA-11.2a]
 gi|225549902|ref|ZP_03770863.1| protein-export membrane protein SecD [Borrelia burgdorferi 118a]
 gi|221192246|gb|EEE18466.1| protein-export membrane protein SecD [Borrelia burgdorferi 72a]
 gi|224513487|gb|EEF83844.1| protein-export membrane protein SecD [Borrelia burgdorferi
           CA-11.2a]
 gi|225369361|gb|EEG98813.1| protein-export membrane protein SecD [Borrelia burgdorferi 118a]
          Length = 586

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 88/211 (41%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +      +  K         I +  I+GP +    I  GI    ++   
Sbjct: 365 NVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++   +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFMCFYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRR---FENAFEDGFKKAFLSIIDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 572



 Score =  115 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 130/490 (26%), Positives = 218/490 (44%), Gaps = 47/490 (9%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              I LGLDL GG  + + +D         +                            L
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRS---------------------------L 165

Query: 101 SFADSRF-KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +FA+       I   +   +              ++      +I + +     +  +S  
Sbjct: 166 TFAEREDAIYRIMQILKDRVDRFGLTEPK-----IVREAGGNKIFLDIPGEKDESRVSTL 220

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           +     +    +D    S    + L +  +         P     +    +K  F   + 
Sbjct: 221 LSGKGNLTFYVVDDESTSLLHRKILEAGSLFSI------PEIQASMNLPDSKQIFPWYVK 274

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
           ++        VR+             +    G H+  A  + DP+T +  V  S D  G+
Sbjct: 275 DSYGVDDESSVRYY------VVDASPENSFDGAHIKDAGVSNDPRTGRDTVAFSLDVDGS 328

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGILAAMLRAG 338
            +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + A  LA + +  
Sbjct: 329 EKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEAQDLALVFKTA 388

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL-N 397
           + P+ + I + R +G  LG+ +I  G  A    L L+ LFM   YG  G+VA FS+ + N
Sbjct: 389 AFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCLVFLFMCFYYGLSGVVAGFSLVIYN 448

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           V L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +    + + GF 
Sbjct: 449 VFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREGRRFENAFEDGFK 508

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++   R ++ FII  
Sbjct: 509 KAFLSIIDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRFILEFIISV 568

Query: 518 KKMKSIDINP 527
           +K K I I+ 
Sbjct: 569 RKSKFISISW 578


>gi|126454028|ref|YP_001066838.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1106a]
 gi|242315000|ref|ZP_04814016.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1106b]
 gi|126227670|gb|ABN91210.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1106a]
 gi|242138239|gb|EES24641.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 1106b]
          Length = 1048

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/590 (12%), Positives = 159/590 (26%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRHAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKILARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFFASVAASVFLYVGIPKGFFPQQ 559



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 66/169 (39%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +    G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMLTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGERPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|260362129|ref|ZP_05775125.1| heavy metal efflux pump, CzcA family [Vibrio parahaemolyticus
           K5030]
 gi|308113831|gb|EFO51371.1| heavy metal efflux pump, CzcA family [Vibrio parahaemolyticus
           K5030]
          Length = 1046

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 64/529 (12%), Positives = 149/529 (28%), Gaps = 39/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +++++ +++  +  L ++ N    + +D  P       I                  
Sbjct: 11  NNRFMILIATLMLVLAGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     E           ++   +   +
Sbjct: 118 APKLPPNAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVVEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P        +
Sbjct: 237 LTSIEDIK------------------SLPLKVTDKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I         L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRYGENASEVISKVKDKLEDLQRSLPDGVEIVTTYDRSTLINAAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILAAFIVMHSQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                 G      A T   ++  +   AI++V  +M + IR K +    
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMASAAALAITLVPVLMGYFIRGKILPEHK 507



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 76/291 (26%), Gaps = 22/291 (7%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  + +                 +    L       V++
Sbjct: 816  WVFVDIDGRDLGSYVVEAQQAVADQLVLPAGYSLAWSGQYEYMERAKDRL------SVVV 869

Query: 676  SAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGY 732
                ++I + + F +       I  L L +    G          F++      + L G 
Sbjct: 870  PITLVIIMMLLYFSFRRVGEVLIIMLTLPLAMVGGLWLMHYLNYNFSIAVGVGFIALAGV 929

Query: 733  SVNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
            +V   V++   +           +  +         D I +     +   + T +   I 
Sbjct: 930  AVEIGVIMLVYLNQAWHHKKLHAEENQQALQIGDLTDAIREGAGLRVRPVMMTVLTVIIG 989

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++P+      G  V+   A PM  G+  A   ++ +   I           
Sbjct: 990  LIPIMYGSRTGSQVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQREVNK 1040



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++   + +   +P      T  
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRYGENASEVISKVKDKLEDLQRSLPDGVEIVTTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLINAAVDNLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILAAFIVMHSQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|167565776|ref|ZP_02358692.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           oklahomensis EO147]
          Length = 1036

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 62/558 (11%), Positives = 161/558 (28%), Gaps = 32/558 (5%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +E D        +         +  +          +  Q ++ +      +   +  
Sbjct: 58  ISVETDYPGASQDLMQGFVTTPIAQSIATADGIEYITSTTTQGKSVVKARLRLNANADRA 117

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             +V   +Q V  KL  D   +++   T+   +++      D +     + +  ++R   
Sbjct: 118 MTEVMAKVQQVKYKLPADAYDSVITKLTDAPTAVMYLGFASDTL--SIPQITDYVVRVAQ 175

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
             +                + +    D +RL     +   ++      N           
Sbjct: 176 PLVTTVPGVASAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGS 235

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                      + D    +                   + +  D  G           + 
Sbjct: 236 LTIADISANTDLTDVGAFN------------------EMVVKSDPNGGGLVRLKDVATVE 277

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                     ++          +     +    +     +   +                
Sbjct: 278 IGGENYNSSALMNGRRAVYIAVNATPAGNPLEIVRGVDAVLPAMERNKPASIQIANMFDG 337

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S +  + T A    +V++V+F+ +   +  ++   +I L+++ + AL+   G +
Sbjct: 338 ARFVNASIAEVRSTLAEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFS 397

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L L ++  +VL IGL VD  I+V E I     + +    +  +G     S +     T +
Sbjct: 398 LNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGEPPARAALIGAREIASPVLVMMATLI 457

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSI 523
                +   G   G   + FA T+  ++L+S   A+++   +   ++  K       K+I
Sbjct: 458 SVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSKMSEGRVAKAI 517

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +        +    +           +    + +   +            + +G I + V
Sbjct: 518 EHTLERVTQVYRRGLHASLAARPAILLIGVGVLAGIVLLFSGVKRELAPQEDQGSIMVAV 577

Query: 584 LANRPVDLSVVRSNLESL 601
            A +  +L  +      +
Sbjct: 578 KAPQYANLDYMERYAPDI 595



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 71/205 (34%), Gaps = 9/205 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             VL  +++     + ++ + +          E+       + I  + + +++     + 
Sbjct: 315 DAVLPAMERNKPASIQIANMFDGARFVNASIAEVRSTLAEAIAIVVVVIFLFLG---SFR 371

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +  
Sbjct: 372 AVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHI 428

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVA 808
                          E     +           P+ + G   GS+   FA  +A  ++V+
Sbjct: 429 EEGEPPARAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVS 488

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
              ++ ++  +   +   +    R+
Sbjct: 489 GIVALTLSPMLGSLLLTSKMSEGRV 513



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L I   L    L     N+     ++TLIG 
Sbjct: 865  GFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N          R  I+++    L   + T+ A    ++P+    G 
Sbjct: 925  ISKHGILMVS--FANDLQRHEGFDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 982

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V    ++F+   +  F+  
Sbjct: 983  GAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAK 1018


>gi|28900335|ref|NP_799990.1| putative cation efflux system transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260877292|ref|ZP_05889647.1| cation efflux system protein CusA [Vibrio parahaemolyticus AN-5034]
 gi|260898329|ref|ZP_05906825.1| cation efflux system protein CusA [Vibrio parahaemolyticus
           Peru-466]
 gi|28808646|dbj|BAC61823.1| putative cation efflux system transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308085051|gb|EFO34746.1| cation efflux system protein CusA [Vibrio parahaemolyticus
           Peru-466]
 gi|308090575|gb|EFO40270.1| cation efflux system protein CusA [Vibrio parahaemolyticus AN-5034]
          Length = 1046

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 64/529 (12%), Positives = 149/529 (28%), Gaps = 39/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +++++ +++  +  L ++ N    + +D  P       I                  
Sbjct: 11  NNRFMILIATLMLVLAGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     E           ++   +   +
Sbjct: 118 APKLPPNAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVVEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P        +
Sbjct: 237 LTSIEDIK------------------SLPLKVTDKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I         L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRYGENASEVISKVKDKLEDLQRSLPDGVEIVTTYDRSTLINAAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILAAFIVMHSQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                 G      A T   ++  +   AI++V  +M + IR K +    
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMASAAALAITLVPVLMGYFIRGKILPEHK 507



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 76/291 (26%), Gaps = 22/291 (7%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  + +                 +    L       V++
Sbjct: 816  WVFVDIDGRDLGSYVVEAQQAVADQLVLPAGYSLAWSGQYEYMERAKDRL------SVVV 869

Query: 676  SAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGY 732
                ++I + + F +       I  L L +    G          F++      + L G 
Sbjct: 870  PITLVIIMMLLYFSFRRVGEVLIIMLTLPLAMVGGLWLMHYLNYNFSIAVGVGFIALAGV 929

Query: 733  SVNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
            +V   V++   +           +  +         D I +     +   + T +   I 
Sbjct: 930  AVEIGVIMLVYLNQAWHHKKLHAEENQQALQIGDLTDAIREGAGLRVRPVMMTVLTVIIG 989

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++P+      G  V+   A PM  G+  A   ++ +   I           
Sbjct: 990  LIPIMYGSGTGSQVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQREVNK 1040



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++   + +   +P      T  
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRYGENASEVISKVKDKLEDLQRSLPDGVEIVTTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLINAAVDNLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILAAFIVMHSQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|254471161|ref|ZP_05084563.1| multidrug efflux RND transporter [Pseudovibrio sp. JE062]
 gi|211959307|gb|EEA94505.1| multidrug efflux RND transporter [Pseudovibrio sp. JE062]
          Length = 1016

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 88/626 (14%), Positives = 187/626 (29%), Gaps = 43/626 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +++  +   +GL+ AL     +  + +FP                         
Sbjct: 6   KKPVLAIVISLLFVLLGLVSAL-----RLPVVQFPVIESSAI---------EITTRYTGL 51

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    +     +             Q+ +T     +  +     ++T  L  
Sbjct: 52  AANVVQGFVTEPVERAAMSVPGVDYVDSKTVAGQSTVTAWLKINEDRTAALSELTANLNK 111

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L VD ++ ++              +          E +  + R  +  +   E   
Sbjct: 112 IRSDLPVDAEEPVISLLRADRPYASFYLDVSSDYWKRF-EITDYLTRNVVPVLSSIEGVQ 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    D  RL     ++  +       N             + +  +  
Sbjct: 171 RARVEGGREPALRIWVDQVRLVGYNLSSQDLVNALASNNVVAAIGDVKGEEQQFNIISNS 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +   + +                       G           +       +   
Sbjct: 231 NLKLAQDFEELAIKDF--------------------GGYTLKLKDIARVELGERPGIVET 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +     +T       L AG        +   +  A   S   
Sbjct: 271 RSNFDERVFLSVWPLPGANEIAIGDTLYEKLEELNAGFPDGLHVGIAFDSTLAMRDSLFE 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      LV +++ +++   +  LV   +I ++++ ++A++  LG TL + +I  IV
Sbjct: 331 IVKTLGETVLLVGLIVLILMGSFRASLVPLTAIPVSLLGSVAVMYTLGFTLNILTILAIV 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I+V E +    ++  S F +        +S I    +T     + + F  
Sbjct: 391 LSVGLVVDDAIVVVENVARHRQQGLSKFQAALQSSKELFSPIIAMTLTLASVFLPIGFVT 450

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G +    R FA T+  ++LIS   A+++   M  ++   +  ++     + R F      
Sbjct: 451 GLSGSLFREFAFTLAAAVLISGIFAVTLSPIMSAYVASPQGKETRFAAFVGRLFTRTSNS 510

Query: 539 A----IQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGVLANRPVDLSV 593
                I+F+  R   +  S +F++  I            I+ +G I   V A     L  
Sbjct: 511 YGNLLIRFLNWRAQILTFSFVFALLMIPFFMFSAKELAPIEDQGNINFIVQAPPGSTLPA 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLV 619
           V  NL+         +        L 
Sbjct: 571 VSENLKPAIEAGKRVEGAGEIWQVLT 596



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 57/141 (40%), Gaps = 14/141 (9%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  +L  +T + + +  ++      G   N+  + A++  +G  V+D +VV + +    
Sbjct: 352 SFRASLVPLTAIPVSLLGSVAVMYTLGFTLNILTILAIVLSVGLVVDDAIVVVENV---A 408

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
           +     +S      +S  E     +  ++      LP+       GS+   FA  +A  +
Sbjct: 409 RHRQQGLSKFQAALQSSKELFSPIIAMTLTLASVFLPIGFVTGLSGSLFREFAFTLAAAV 468

Query: 806 VVA-----ASS---SIFIAAP 818
           +++       S   S ++A+P
Sbjct: 469 LISGIFAVTLSPIMSAYVASP 489



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 89/267 (33%), Gaps = 9/267 (3%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             +    +           + +    P    +  S++ SL++           +    R+
Sbjct: 736 AYVVVPMVEKDARLAPDQIMNLQIKGPESTYIPLSSIASLEVAAAPRTLGKFNQQRSFRI 795

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                    + + LE +++K  +I+P     +   +  +I +E     +  ++ S   + 
Sbjct: 796 LGSVVPGTTKAQALEFMEQKAKQILPAGYSLDYAGISRQIKQE-GNSLMFVLLASIAVVY 854

Query: 682 IYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE-FNLTAVAAVLTLIGYSVNDKVV 739
           + + ++F  +   L  +   +         F   G    N+ +   V+TL+G    + ++
Sbjct: 855 LALSVQFNSFRTPLIVVVGSVPLALSAALVFTFLGFTSVNIYSQIGVITLVGLVAKNAIL 914

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
           + +       L          I +S    L   + T+ A  +   P+ +    G     S
Sbjct: 915 IVEFAN---VLVEQGKDLTTAIIESAKTRLRPVIMTTAATVLGHFPLVLVTGPGAEARNS 971

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFI 823
             I +  G+V+    ++     I L  
Sbjct: 972 IGIILVAGMVIGTMFTLITLPYIYLLF 998


>gi|291562099|emb|CBL40915.1| Cation/multidrug efflux pump [butyrate-producing bacterium SS3/4]
          Length = 1018

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/620 (11%), Positives = 172/620 (27%), Gaps = 46/620 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V++   +   GL     + L        P  +                 V   
Sbjct: 8   LKRPVTTVLVVLCLIVFGLSSIFSSQLELIPEMEMPMLI--------------VSAVYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D V+  +    ++    L           +    + + +   +  +   D +   L 
Sbjct: 54  ASPDDVDQLVISKIEDEIGTLSGVDSVTSMSSENFGMVLVQYDYDQDIDKAYDDLKKKLD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           G+ S L  D     ++         +                   +    + +I    S 
Sbjct: 114 GIKSDLPDDVDTPTIIEMDINSTPSITLAV----NNDSVDNLYNYVNDDIVPEIEKLTSV 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  E  P +L Q       +       + S       V          
Sbjct: 170 ASVDVSGGQEAYIKAELIPEKLSQYHVNMNTIIAALKSADFSMPIGSTSV---------- 219

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G      T+     T + +  I          +     NI   +      
Sbjct: 220 ----------GNKDLSVTSGTSFDTMELLKKIPITLGNGNIIYMEDVANIYNTVEAKDSI 269

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                                    +        L+A        +V          S  
Sbjct: 270 GRYDGKDTMTIGVKKNQDSDHITVSKAVQETMQTLKAQDP-SLEYVVVNDYSDQISNSLK 328

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   + + ++++     K  L+   SI ++++  L L+  +G TL + +++ +
Sbjct: 329 SVFQTMIMAVIIAMFIIWLFFGDIKASLIVGTSIPVSILAALILMKTMGFTLNVITLSSL 388

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTIFDSNITALIATVVL 477
           VLG+G+ VD++I+V E       K         +   G +    +I    +T  +  + L
Sbjct: 389 VLGVGMMVDNSIVVLESCFRFTDKGGGFVETRKAAIDGTAAVLESIIGGTVTTCVVFIPL 448

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
                  G   +    T+   ++ S+ +A+++V    ++    +K  +     +      
Sbjct: 449 ALISGMSGQMFKPLGFTIVFCMIASLISAMTLVPLCYVYYRPKEKENTPASGIMRALQNG 508

Query: 535 PDCIAIQFMRARFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
              +  + ++ +   +G +++  I S+             D +G I + +     + +  
Sbjct: 509 YRSLMEKLLKKKAMVMGTAVVLVIFSLFLATKLKTELMPADDQGTIAVTIETQPGLKIEE 568

Query: 594 VRSNLESLQIGDISFQNFDG 613
           V   L+  +       + D 
Sbjct: 569 VDKILQRAENYVTQDPDLDS 588



 Score = 81.7 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 89/238 (37%), Gaps = 8/238 (3%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +      S Q+                   A +   + ++K++ +     TI   E    
Sbjct: 781  ADIGFKDSPQSITKSDKQYQVTITGTLTEGADSTTKDKIQKEVIDKYLSGTISMQENTST 840

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEF 718
            K+  E        +  +   + + +  +F+   F++  +TT+   +  +  F  L     
Sbjct: 841  KMMNEEFASLGQAIATAVFLVFVVMAAQFESPKFSIMVMTTIPFALIGSFLFLWLVDCPI 900

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++T++   L L+G  VN+ ++  D        Y  ++ F++ + ++    +     T++ 
Sbjct: 901  SMTSLLGFLMLVGTVVNNGILYVD----TANQYRATMDFKEAVIEAGATRMRPMFMTTLT 956

Query: 779  AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              ++++PMA      G  +   A+    G++V+ + ++ +     + +         I
Sbjct: 957  TIVAMIPMAAAYGNAGKTMQGLALVDVGGLIVSTAMALLVLPVFYVIMSGKNQDKKEI 1014



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 101/302 (33%), Gaps = 3/302 (0%)

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           + +     I  +++  + + I           + +      ++    I + +     + +
Sbjct: 194 YHVNMNTIIAALKSADFSMPIGSTSVGNKDLSVTSGTSFDTMELLKKIPITLGNGNIIYM 253

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             V +   +++  D   +    +   +   + Q  D +  ++ ++   + +    P    
Sbjct: 254 EDVANIYNTVEAKDSIGRYDGKDTMTIGVKKNQDSDHITVSKAVQETMQTLKAQDPSLEY 313

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                   +IS  L       ++   IAM I          +L   T++ + I   L   
Sbjct: 314 VVVNDYSDQISNSLKSVFQTMIMAVIIAMFIIWLFFGDIKASLIVGTSIPVSILAALILM 373

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   N+  +++++  +G  V++ +VV +   +        +  R          L  
Sbjct: 374 KTMGFTLNVITLSSLVLGVGMMVDNSIVVLESCFRFTDKGGGFVETRKAAIDGTAAVLES 433

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++   +  +P+A+     G +       + F ++ +  S++ +     ++      
Sbjct: 434 IIGGTVTTCVVFIPLALISGMSGQMFKPLGFTIVFCMIASLISAMTLVPLCYVYYRPKEK 493

Query: 829 KN 830
           +N
Sbjct: 494 EN 495


>gi|238788578|ref|ZP_04632371.1| Cation/multidrug efflux pump [Yersinia frederiksenii ATCC 33641]
 gi|238723491|gb|EEQ15138.1| Cation/multidrug efflux pump [Yersinia frederiksenii ATCC 33641]
          Length = 1077

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 68/555 (12%), Positives = 161/555 (29%), Gaps = 46/555 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L  +I   G+L +L     ++  D FP                   +V + 
Sbjct: 23  LRRPYTFVVLALLILIGGILSSL-----RTPTDIFPEIRIPV-----------IAVVWQ- 65

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
             +      +      L        +        +  Q  + I + F           ++
Sbjct: 66  -YNGLPPDEMSNRISTLFQRVLTTSVNGVEHIEANSYQGLSVIKVFFQPGVDIAVANAQI 124

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
           T   Q V  ++       +++      + I+    +   +           +      + 
Sbjct: 125 TASAQVVTRQMPTGITPPIVINYNAATVPILQLALSGQGLSEQ--NLYDLGLNTIRTPLI 182

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                           Q+  +  P  L+    +   +S      N         +  L  
Sbjct: 183 TVPGAAIPYPYGGTQRQIQIDVKPEALQARGLSALDISAALAANNVLTPIGTQKIGELEY 242

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +           +I                      I    +     +     ++    A
Sbjct: 243 TLKLNSAPSAIEDIG--------------------RIPVKVVNGSTIYMRDVADVRDGSA 282

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +   +                S    ++        +R+        +         
Sbjct: 283 PQTNIVHVDGGRSVLMSVLKNGSTSTLAIVDGIRDRLDSIRSSLPEALRIVPINDQSVFV 342

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S        AI A L  +++ + +   +  ++   SI L+++ ++  LS+ G TL L 
Sbjct: 343 RASIKGVVMEGAIAAALTSVMILLFLGSWRSTVIIAVSIPLSILGSIIALSVFGETLNLM 402

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L IG+ VD   +  E +     + + V  ++  G  +  +  F S +   IA V
Sbjct: 403 TLGGLALAIGILVDDATVTIENVNWHLEQGKEVETAILDGARQIVTPAFVSLLCICIAFV 462

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            +FF  G + R   + M +S++ +M  +  + R ++  + +Y     +      +  +  
Sbjct: 463 PMFFLDGVS-RFLFVPMAMSVIFAMVCSFILSRTLVPTMAKYLLKPHVFSEDGDKQHIHS 521

Query: 536 DCIAIQFMRARFWGV 550
               ++F +      
Sbjct: 522 RNPLVRFQQQFEVRF 536



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 5/159 (3%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +  +  +++I +     W   +    ++ L I  ++   ++FG   NL  +  +   IG
Sbjct: 354 AIAAALTSVMI-LLFLGSWRSTVIIAVSIPLSILGSIIALSVFGETLNLMTLGGLALAIG 412

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +                I     + +  +  + +   I+ +PM    G
Sbjct: 413 ILVDDATVTIENVN---WHLEQGKEVETAILDGARQIVTPAFVSLLCICIAFVPMFFLDG 469

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                F +PMA  ++ A   S  ++  ++  +  +  K 
Sbjct: 470 VSRFLF-VPMAMSVIFAMVCSFILSRTLVPTMAKYLLKP 507



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 61/167 (36%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            + G++ + + + + I + F  W      ++ L   +   +          ++ A+   + 
Sbjct: 904  LFGLMGAIVLIYLLIVVNFQSWLDPAVIVSALSAALAGIVWMLFATDTTLSVPALTGAIM 963

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G +  + V++    R+ +              ++        + T++A  I +LPMA+
Sbjct: 964  CMGVATANSVLIISFAREKLTELG---DATAAALEAGTVRFRPVLMTALAMIIGMLPMAI 1020

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                GG         +  G++ A  +++     +   ++      ++
Sbjct: 1021 GLGEGGEQNAPLGRAVIGGLLFATIATLIFVPVLFSLVHGRDPHRSK 1067


>gi|217031691|ref|ZP_03437195.1| hypothetical protein HPB128_155g4 [Helicobacter pylori B128]
 gi|216946538|gb|EEC25138.1| hypothetical protein HPB128_155g4 [Helicobacter pylori B128]
          Length = 228

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 2/218 (0%)

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
             L      + FMR   +GV +S + ++ ++ LLF  G + GIDF GG  +     +   
Sbjct: 1   MELFKQTRILSFMRYSNYGVIVSAILALLALGLLFFKGFSLGIDFAGGSLVQARYTQNAP 60

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  VR   E          +  G K  ++     P    A+   L  +   I +      
Sbjct: 61  IKEVRDLFEKEARFKGVQVSEFGSKEEILI--KFPFVETAENEDLNAIVANILKPSGDFE 118

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           I+  + VGP++  EL  KGI+ +I++ +A+++Y+  R++W FAL ++  L+ D+      
Sbjct: 119 IRKFDTVGPRVGSELKEKGILSLILALMAIMVYVSFRYEWRFALASVIALVHDVILVASS 178

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +F I+ NL  +AA+LTLIGYS+ND ++++DR+R+ M
Sbjct: 179 VIVFKIDMNLEVIAALLTLIGYSINDTIIIFDRIREEM 216


>gi|53719844|ref|YP_108830.1| AcrB/AcrD/AcrF family membrane protein [Burkholderia pseudomallei
           K96243]
 gi|167739273|ref|ZP_02412047.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 14]
 gi|167816486|ref|ZP_02448166.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei 91]
 gi|52210258|emb|CAH36237.1| putative AcrB/AcrD/AcrF family membrane protein [Burkholderia
           pseudomallei K96243]
          Length = 1048

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/590 (12%), Positives = 159/590 (26%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRDIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISVGIYKKPGANTVSTVDKILARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFFASVAASVFLYVGIPKGFFPQQ 559



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 66/169 (39%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +    G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMLTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGERPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|289811020|ref|ZP_06541649.1| preprotein translocase subunit SecD [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 418

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 73/274 (26%), Positives = 146/274 (53%), Gaps = 21/274 (7%)

Query: 30  SMLDRFPSAMPK---NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           ++    P  +     + + LGLDLRGG H ++EVD D  +    +   D LRS L+++GI
Sbjct: 93  NLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGI 152

Query: 87  GVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
              ++R+  N  ++++F DS+ ++              + L    +  ++ + +  ++  
Sbjct: 153 PYTTVRKENNYGLSITFRDSKARDEAI-----------AYLTPRHRDLVISSQSGNQLRA 201

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           V++   + +   +A++Q++ I+R R++Q+G++E  +QR G+ RI+++LPG QD +R +++
Sbjct: 202 VMTDARLSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEI 261

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRF-----LRDSDGNQYLVEDKVEISGIHLNGATAN 260
           LG TA + F  V  N  +     G         +  +G   ++  +V ++G H+  +T++
Sbjct: 262 LGATATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSS 321

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
              + ++P V+IS D  G       T+DNIGKP+
Sbjct: 322 -QDEYNQPQVNISLDSAGGNIMSNFTKDNIGKPM 354


>gi|255656384|ref|ZP_05401793.1| putative multidrug efflux pump, membrane protein [Clostridium
           difficile QCD-23m63]
 gi|296450169|ref|ZP_06891930.1| RND superfamily resistance-nodulation-cell division antiporter
           [Clostridium difficile NAP08]
 gi|296878550|ref|ZP_06902555.1| RND superfamily resistance-nodulation-cell division antiporter
           [Clostridium difficile NAP07]
 gi|296260932|gb|EFH07766.1| RND superfamily resistance-nodulation-cell division antiporter
           [Clostridium difficile NAP08]
 gi|296430357|gb|EFH16199.1| RND superfamily resistance-nodulation-cell division antiporter
           [Clostridium difficile NAP07]
          Length = 1044

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/600 (11%), Positives = 173/600 (28%), Gaps = 44/600 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++++ ++   G +        +  ++  P       +                 
Sbjct: 9   KRPLTIIMVFLVLIVFGGI-----GYKKMSINLMPDIEIPVVM---------VMTTWTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V+  +    DE  S +      + S ++  + +   F      + I + V   +  
Sbjct: 55  GPQDVDEQIGQKVDESLSAVSNVKSTISSSQESVSMVVAQFEFGTNLDEIMNDVRSKVDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D  K  ++       +I     +     + +             +I   +   
Sbjct: 115 LQTSLPDDAAKPTVLKLDMNAQAIGQLVISGGN-ENSSQALRKYAEDVIQPKIESIDGVT 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+    DP+ L     + + +       N +                   
Sbjct: 174 SADLKGGEKAQVNVIADPAVLSNYGVSLSTIKGVLSSSNKTFPYGS-------------- 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G       A    ++   +  I     G          ++    A      
Sbjct: 220 ------ITQGEDKIVLRAIDKLESLDDIKQIQIPVKGGNTVRLDNLCSVDYGYADKDSIY 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S +   +    +++A      L   +       +          S + 
Sbjct: 274 RYNGKDSLVIDISKQQDANTVKVMQSAYKYVDELNKENPQF-KIKIANDTSSYISESINS 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I + +  IV+F  +   +  LV   +I +++I  +A+L   G +L L + + +V
Sbjct: 333 VMNNLLISSVIAFIVIFAFLKSVRASLVVAIAIPISIIGAIAILYFTGESLNLITASSLV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + +G+ VD+  +V E I +  +  + S+      G     + I  S +T +   + + F 
Sbjct: 393 ISVGMVVDNATVVIENIFKYRKSGRLSIDDCAIEGTRTVTNAILASTLTTIAIFLPIMFT 452

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G           T+  S+  S   AI++V ++   + R K  + +       F  + + 
Sbjct: 453 DGIAKITFGALGKTLIASLAFSFIGAITLVPSVFAKLSRGKNSQKMQEKDTPLFDKVSEL 512

Query: 538 IAIQ----FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                       R   +   ++F      + F          KG + + +   + + L  
Sbjct: 513 YKRLLSVCLRHQRLVVISSLLIFIASLFGMSFIGMDFMPAADKGELAISIELPKGLSLES 572



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 91/253 (35%), Gaps = 8/253 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +  N      V       +++ D        + NF V +     +  A T     ++K 
Sbjct: 762  QLKVNSTTGKEVPLGAFSDIKMADGLQSISRTDGNFSVNITATLDNLDAGTATKLALEKT 821

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
               ++P             ++  +   G   ++I+ + + + +  +F+  F+   I    
Sbjct: 822  NKMVIPKDYSIGVGGQTEMMNESMASLGF-SMLIAIVLVYMVMVAQFE-SFSKPFIIMFC 879

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +         +L   G   +   +  ++ LIG  VN+ +V+ D + + ++    +     
Sbjct: 880  VPFAFVGVVLSLLVSGQSLSTVGMLGIILLIGIVVNNGIVLIDYI-EQLRKTNRNNDLIG 938

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
            L+       L   + T+    + +LP A+    GG  +   AI +  G+ ++   ++ + 
Sbjct: 939  LVSIGCAARLRPVLMTTATTILGMLPTALSLGEGGETMQPLAIVIMGGLTISTLITLVLI 998

Query: 817  APILLFIYDWRAK 829
              I L    W  K
Sbjct: 999  PTIYLIFDKWENK 1011



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/261 (9%), Positives = 71/261 (27%), Gaps = 7/261 (2%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               Q+ +       + +           D         K+ LV    +  D+     + 
Sbjct: 239 DDIKQIQIPVKGGNTVRLDNLCSVDYGYADKDSIYRYNGKDSLVIDISKQQDANTVKVMQ 298

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF--KWYFA 693
              K            +                 ++  ++ +  +   +   F      +
Sbjct: 299 SAYKYVDELNKENPQFKIKIANDTSSYISESINSVMNNLLISSVIAFIVIFAFLKSVRAS 358

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L     + + I   +      G   NL   ++++  +G  V++  VV + + K  K    
Sbjct: 359 LVVAIAIPISIIGAIAILYFTGESLNLITASSLVISVGMVVDNATVVIENIFKYRKSG-- 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI---PMAFGIVVAAS 810
            +S  D   +         + +++      LP+    G    +F      +   +  +  
Sbjct: 417 RLSIDDCAIEGTRTVTNAILASTLTTIAIFLPIMFTDGIAKITFGALGKTLIASLAFSFI 476

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            +I +   +   +   +    
Sbjct: 477 GAITLVPSVFAKLSRGKNSQK 497



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/525 (9%), Positives = 142/525 (27%), Gaps = 39/525 (7%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +R+   +VI   +I    L       +                +  GL L          
Sbjct: 521  LRHQRLVVISSLLIFIASLFGMSFIGMDFMPAADKGELAISIELPKGLSL---------- 570

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            + +D+     +    ++                    I +     + ++   D+V   + 
Sbjct: 571  ESNDYYVSMTEKKVSDIPEIKTLITTLTSDSNNNTANIAIELESQKNRKRSTDEVEKEII 630

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               + +          ++     S       +       ++   +   ++   I    + 
Sbjct: 631  DRVATVPDCKINVSQNSSVMGGTSGADFTLEMKGPDLDVLKILGKEAEKQFSSIKGFRNV 690

Query: 181  IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
               L       Q     D  + ++    TA+++       N        +   +     +
Sbjct: 691  ETSLTDTTQEAQFT--IDKHKAQEYGINTAEIAGLLRTAINGDSVTTATIDDYKVDVNLK 748

Query: 241  YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +  +    +  I      +    +             G +       +            
Sbjct: 749  FKADSIDNLEDIKQLKVNSTTGKEVPLGAFSDIKMADGLQSISRTDGN------------ 796

Query: 301  RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                         +  A +          +         +P   +I           S +
Sbjct: 797  ----------FSVNITATLDNLDAGTATKLALEKTNKMVIPKDYSIGVGGQTEMMNESMA 846

Query: 361  IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                +  I   LV +V+           +  F +    +  +  L + G +L+   + GI
Sbjct: 847  SLGFSMLIAIVLVYMVMVAQFESFSKPFIIMFCVPFAFVGVVLSLLVSGQSLSTVGMLGI 906

Query: 421  VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY--STIFDSNITALIATVVL- 477
            +L IG+ V++ I++ + I +  + N++      +    A     +  +  T ++  +   
Sbjct: 907  ILLIGIVVNNGIVLIDYIEQLRKTNRNNDLIGLVSIGCAARLRPVLMTTATTILGMLPTA 966

Query: 478  --FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
                 GG  ++  AI +   + IS    + ++  + +   +++  
Sbjct: 967  LSLGEGGETMQPLAIVIMGGLTISTLITLVLIPTIYLIFDKWENK 1011


>gi|254427820|ref|ZP_05041527.1| RND transporter, HAE1/HME family, permease protein [Alcanivorax sp.
           DG881]
 gi|196193989|gb|EDX88948.1| RND transporter, HAE1/HME family, permease protein [Alcanivorax sp.
           DG881]
          Length = 1034

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 91/680 (13%), Positives = 191/680 (28%), Gaps = 44/680 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   + ++  +I  +G+L AL     +  +   P  +    IS+     G         
Sbjct: 7   RNGTLMTVIVLIITLLGVLAAL-----RIPVQMIPD-LEVRTISVLTRWSG-------AT 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D     L    + LR+ L        +    + +I L F       +   +V   L  
Sbjct: 54  PQDVEKEILIEQEEYLRN-LPNLRRLTATAYSGEAEIELEFPFGVDITDALIRVNNALSQ 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE---QSMEIIRQRIDQIGISE 178
           V         +  +++++    S +             ++       I  +   ++   +
Sbjct: 113 V-PAYPDTVDQPQILSSSFSSNSFMYFSVYPQAGNPRGLDMDMMRDFIDDEVRPRMESVQ 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                        Q+    D   L Q   T   +                          
Sbjct: 172 GVSMVEMRGGAERQIQVLLDAQALAQFGLTVVGVRDALRE-------------------- 211

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               V      SG            +    + D+     G           +      V 
Sbjct: 212 RNQDVSGGEVDSGKRRYLLRTVGRFENLDDLNDLILQRQGDSLVRLRDVATVVMDHFPVR 271

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG--SLPIKLNIVEERNVGADL 356
                    +       +   +     +       +++            +   +V    
Sbjct: 272 QISRFNGNPVIMLAVRRETGSNVIDIKQGMLEQVDLVKKEVLEPAGMDMSLMSDDVRYVE 331

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S +       I A    +V+F+ +   +   V    I +  I     L L G T+ + S
Sbjct: 332 ASVANVWINLGIGAVFATLVMFLFLRSVRITAVGVIGIPICTIAAFLGLLLAGRTINVIS 391

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +AGI   IG+ +D++I+V E I  E RK      S   G  + +  +F S +T ++  + 
Sbjct: 392 MAGIAFAIGMTLDNSIVVLESIEMERRKGLDRIRSAVSGIQKVWPAVFASTMTTVLVFLP 451

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F     G      AI +  SIL+SM  A++++  +   +     M     +      +
Sbjct: 452 VVFIQEEAGQLYSDIAIAVSASILVSMLVAMTVIPTLSARLDFSAVMDHDGEHSRWMKAI 511

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLANRPVDLS 592
                 +   R R        L    +I +  T    Y  + +       + A    +L 
Sbjct: 512 NRWATQLSATRPRQLATLGITLAIATAIVVFLTPPAEYLPEGEEPKTFASMNAPPGYNLE 571

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            + +  + ++   +     D +      L   P   +      E ++     + P     
Sbjct: 572 TMAAIADEVEAELLPLVGQDPQAYDRGELFMPPLKYMNLGVSAENLRIIAEPMDPAHMEP 631

Query: 653 NTEIVGPKISRELIRKGIVG 672
             + +     +    +    
Sbjct: 632 MMDGITQVYRQYPGMRAFAA 651



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 52/149 (34%), Gaps = 6/149 (4%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I +  A L+              +  + +          L G   N+ ++A +   IG +
Sbjct: 343 IGAVFATLVMFLFLRSVRITAVGVIGIPICTIAAFLGLLLAGRTINVISMAGIAFAIGMT 402

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
           +++ +VV + +    +     +         I +       ++M   +  LP+       
Sbjct: 403 LDNSIVVLESIEMERR---KGLDRIRSAVSGIQKVWPAVFASTMTTVLVFLPVVFIQEEA 459

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           G +    AI ++  I+V+   ++ +   +
Sbjct: 460 GQLYSDIAIAVSASILVSMLVAMTVIPTL 488



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 47/125 (37%), Gaps = 11/125 (8%)

Query: 690  WYFALGAITTLILDI---TKTLGFFALFGI--EFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            W + L  +TT+ L I      L      GI   F++  +   L L+G  VN+ +++   +
Sbjct: 887  WGYPLLIMTTIPLGIASGLLGLALMNAAGISQPFDMITMLGFLILMGTVVNNPILI---V 943

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
             +         +    +  ++   L     T++     + P+ +    G  +       +
Sbjct: 944  HEATLNMRAGSAAAQAVSDAVASRLRPIAMTTITTVCGLAPLVLIPGEGTELYRGVGAIV 1003

Query: 802  AFGIV 806
             FG++
Sbjct: 1004 LFGLL 1008


>gi|254425863|ref|ZP_05039580.1| RND transporter, HAE1/HME family, permease protein [Synechococcus
           sp. PCC 7335]
 gi|196188286|gb|EDX83251.1| RND transporter, HAE1/HME family, permease protein [Synechococcus
           sp. PCC 7335]
          Length = 1047

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/516 (14%), Positives = 143/516 (27%), Gaps = 36/516 (6%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W      + C I L   L  F      +  P                            
Sbjct: 4   RWRHGTIVLFCLIALFGILALF--SLPSELRPGGDRPEVT---------IQTNYPGASPA 52

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V   +    +E+   ++       S    Q+ I+L FA           V   LQ  + 
Sbjct: 53  EVEDLITRPIEEVLEGVQGVQEMTSSSGNGQSSISLEFAWDVDINQAFVDVLSKLQQAD- 111

Query: 125 KLNVDPKKNLLVTTTEKEISIVLS--QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            L  +  ++ +   +    S +L       +   +               ++   E    
Sbjct: 112 DLPAEASESEVQIVSGDTDSPMLRIHLVPAEGATADLNHYRDLADDVIGPRLRHIEGIGD 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    DP  L         +       N   +G    V            
Sbjct: 172 LSIEGGQAREVEVIVDPRALADRNLAIDDVINTLRSSNRDIRGGPMVVGRREYRVRTVSR 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D  ++ G                  + +  D  G     +V    IG+    +   R 
Sbjct: 232 ANDVKQLEG------------------LILRRDTSGTVYLGDVAEAKIGRATPEMAFLRD 273

Query: 303 LTAPVINQAIPSGKAQISGN-FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               +   A+      +     +I  A                 I+          S S 
Sbjct: 274 GEPAITIGAVRQIGGNVPEISKSIRAALAEIEERFIQQGENVRFIIPYDENDYISQSISF 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + +  I A L   VL + +   +   V   +I   +I    + +LLG +L + S+AG+ 
Sbjct: 334 VQSSLIIGAVLAAFVLILFLGSLRTVAVIAITIPTTLISVFIVFALLGRSLNVISLAGLA 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
              G+ VD+ I+V E I    +K ++   +           +  S +T +   + +    
Sbjct: 394 FASGMIVDNAIVVLENIFTHIQKGKTTVQAAVDATQEVSGAMLASTLTNVAVFMPIVLVE 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G       I +  S+L S+F A+++V  +    
Sbjct: 454 GEAGQLFFDLGIALSASVLFSLFAALTLVPMLSGLF 489



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 79/246 (32%), Gaps = 10/246 (4%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V      +  + R+  E   + D       G    +     +   S+         +  
Sbjct: 250 TVYLGDVAEAKIGRATPEMAFLRDGEPAITIGAVRQIGGNVPEISKSIRAALAEIEERFI 309

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIV--GVIISAIAMLIYIWIRFKWYFALGAITT 699
                    I   E      S   ++  ++   V+ + + +L    +R     A+ AI T
Sbjct: 310 QQGENVRFIIPYDENDYISQSISFVQSSLIIGAVLAAFVLILFLGSLR---TVAVIAI-T 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +   +      FAL G   N+ ++A +    G  V++ +VV + +           +   
Sbjct: 366 IPTTLISVFIVFALLGRSLNVISLAGLAFASGMIVDNAIVVLENI---FTHIQKGKTTVQ 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
               +  E  G  + +++      +P+ +  G     F   +   +  +   S+F A  +
Sbjct: 423 AAVDATQEVSGAMLASTLTNVAVFMPIVLVEGEAGQLF-FDLGIALSASVLFSLFAALTL 481

Query: 820 LLFIYD 825
           +  +  
Sbjct: 482 VPMLSG 487



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 93/253 (36%), Gaps = 16/253 (6%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +++ V L  V   +E+     I   + +      V L  +        +  E + + +  
Sbjct: 789  SSQQVQLLDVADMVETTGPNSIGHVDTERAITLTVSLSQEAPLGGLLEQTEETILQPLRA 848

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             +P             +S  L + G   ++   I  L+ + +     + L  +  + + I
Sbjct: 849  TLPSGYRAELAGSANVLSETLRQLGATFLLSLLITYLLLVALYRSLIYPL--VIMVTVPI 906

Query: 705  TKTLGFFALF------GIEFNLTAVAAVLTLI--GYSVNDKVVVYDRMRKNMKLYTTSIS 756
              T    +L       G+   L  +A +  +I  G  VN+ +++ DR    ++L      
Sbjct: 907  GLTGALLSLAIANLIPGVVVPLDMIAGLGFVILTGIVVNNAILLVDR---TLQLQQQGQD 963

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
                + +++ + L     ++  + + +LP+A +   G  +     I +  G+  +   + 
Sbjct: 964  LDRSLYEAVRDRLRPIFMSAGTSILGMLPLATFPGKGAELYQGLGIVLVGGLAFSTLLTP 1023

Query: 814  FIAAPILLFIYDW 826
             I   ++  + D+
Sbjct: 1024 TIVPAVMRLLRDF 1036


>gi|314934308|ref|ZP_07841667.1| AcrB/AcrD/AcrF family protein [Staphylococcus caprae C87]
 gi|313652238|gb|EFS16001.1| AcrB/AcrD/AcrF family protein [Staphylococcus caprae C87]
          Length = 1058

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/677 (10%), Positives = 177/677 (26%), Gaps = 45/677 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + + L  ++  +G + +      +  L+  P                     +     
Sbjct: 12  NKFAIFLMVVLVILGGIYSSA----KLKLELLPDVENPMI---------SVQTTMPGATP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 +    D     L           Q  + +T+ + D    +   +++   +  + 
Sbjct: 59  QSTEDEISRKIDNQVRSLAYVKSVKTESIQNASIVTVEYNDGTDMDKAEEQLRKEIDKIK 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                      L   +     IV      +       + + E+ +Q I ++         
Sbjct: 119 --FKDGVGDPELTRNSMDAFPIVAYSFTSN--KHDLKDVTKELNQQLIPKLQTINGVQNA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             + +   ++  +     L     T   +  +           +F       S       
Sbjct: 175 QLNGQTNREVTLKFKQDALDDKGLTADDVENYIKTATRETPLGLFQFGKTDKSLVVDGQF 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL--------- 294
           E    +  + +  + A    ++     +   D               G  +         
Sbjct: 235 ESVNALKNLKIPLSIAGQGNQSSDDSNNSDSDNESLMPKENSNSSQSGSKMASSNGKMPS 294

Query: 295 ------------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
                                                +     +            +  +
Sbjct: 295 VSLKDLADVSVGDNRTSISKTNGKDAVNLQIMKSQDANTVQVAKEVQKKVDEFVKNNKGM 354

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
                          S        A+   + +IV+ + +   +   ++  SI L++++ +
Sbjct: 355 TSTK-TMDTAKPIEDSLYTMVEKAALGTIVAIIVILLFLRNIRTTAISVVSIPLSILIAM 413

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRA 459
             L L   +L + ++  + + IG  +D +I+V E I        +       +    +  
Sbjct: 414 VALKLSNVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLSDPNETMKGENLIINATTEV 473

Query: 460 YSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           +  I  S +  ++  + L F     G   R FA+ +  S+L S+  +I++V A+   + R
Sbjct: 474 FKPIMSSTLVTIVVFLPLVFVSGSVGEMFRPFALAITFSLLASLLVSITVVPALGSTLFR 533

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                      L         I    +  ++  + IS +  I SI L  T      I   
Sbjct: 534 KGVKTKRQREGLGVISKEYRRILKWSLNHKWIVIVISKVILIGSIGLGATTLGTSYISSG 593

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
               L +        +       + ++          +          P D    T  + 
Sbjct: 594 DNKFLALTYTPKPGETEKSVLNHAKEVQKYLDSKDKVQAVQYSVGGPTPQDPTGSTNSMA 653

Query: 637 MVKKKITEIVPLSTIQN 653
           ++ K  +  +      +
Sbjct: 654 IMVKYDSNTLHFDEEPD 670



 Score = 94.4 bits (232), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 105/325 (32%), Gaps = 3/325 (0%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           +      K  KS+ ++           + I    A           +  S         N
Sbjct: 216 LGLFQFGKTDKSLVVDGQFESVNALKNLKIPLSIAGQGNQSSDDSNNSDSDNESLMPKEN 275

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                 G          P       +++          +    +   L  ++ Q  ++V 
Sbjct: 276 SNSSQSGSKMASSNGKMPSVSLKDLADVSVGDNRTSISKTNGKDAVNLQIMKSQDANTVQ 335

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             + ++    +  +     T   T      I   L        + + +A+++ +      
Sbjct: 336 VAKEVQKKVDEFVKNNKGMTSTKTMDTAKPIEDSLYTMVEKAALGTIVAIIVILLFLRNI 395

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                ++ ++ L I   +    L  +  N+  + A+   IG  ++D +VV + + + +  
Sbjct: 396 RTTAISVVSIPLSILIAMVALKLSNVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLSD 455

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVV 807
              ++   +LI  +  E     + +++   +  LP+  V G  G +   FA+ + F ++ 
Sbjct: 456 PNETMKGENLIINATTEVFKPIMSSTLVTIVVFLPLVFVSGSVGEMFRPFALAITFSLLA 515

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +   SI +   +   ++    K  R
Sbjct: 516 SLLVSITVVPALGSTLFRKGVKTKR 540



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 60/145 (41%), Gaps = 6/145 (4%)

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                  + +L   +   +    + G   ++ ++  +L LIG  V + +V+ DR+   +  
Sbjct: 912  LAPFTILFSLPFTVVGVVLALVITGETISVPSLIGMLMLIGIVVTNAIVLIDRV---INN 968

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVV 807
                +  ++ + ++    +   + T++A   +++P+     S I      A  +  G+V 
Sbjct: 969  EKNGLEMKEALIEAGGTRIRPILMTAIATIGALIPLLFGRDSSILISKGLAATVIGGLVS 1028

Query: 808  AASSSIFIAAPILLFIYDWRAKNAR 832
            +   ++ +   I   ++  + K +R
Sbjct: 1029 STILTLIVVPVIYEILFTLKNKFSR 1053


>gi|123443815|ref|YP_001007786.1| putative cation efflux system protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090776|emb|CAL13658.1| putative cation efflux system protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 1043

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 65/551 (11%), Positives = 141/551 (25%), Gaps = 48/551 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN   +++   M+   G+       L Q+ LD  P       I           +    
Sbjct: 10  LRNRLLVLLGAVMMAAWGIWS-----LQQAPLDALPDLSDTQVI---------IRVSYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          +                + + F D         +V  +L 
Sbjct: 56  KAPQVVEDQVTYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFDDGTDPYWARSRVLEYLS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S L  + K  L    T                     +           ++    + 
Sbjct: 116 QVQSTLPAEAKAALGPDATGVGWIYEY-ALIDRTGKHSLADLRALQDWTLKFELKTVPNV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ Q     DP R+R L  +  +++      N    G +  +          
Sbjct: 175 SEVASVGGMVRQYQVILDPERMRALNLSHQQIASAIADSNQEGGGSVLEMGAAEYMVRAS 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++                           +     G              P       
Sbjct: 235 GYLKTP-------------------DDFRNIVITARDGIPILLSDVASLRIGPEMRRGVA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   I   +   +   TI         ++         +           +  
Sbjct: 276 ELNGEGEVAGGIIVMRYGQNALETINGVKEKLQQIQRSLPAGVEIVPVYDRSHLITQAID 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V ++  + + + +  LVA  ++ L ++    ++   G    + S+ GI
Sbjct: 336 SLSFKLLEEFLVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGI 395

Query: 421 VLGIGLAVDSNILV-------NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            + IG  VD+ I++        E+ R ++     V         +A   +  +   +L+ 
Sbjct: 396 AIAIGAMVDAAIVMIENMHKVLEQWRRDHPGQTPVSQDYWRISEQAAIEVGPALFCSLLI 455

Query: 474 TVVLFFF-------GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             + F          G      A T   ++ +S   AI++V  +M + IR K        
Sbjct: 456 ITLSFIPVFTLQAQEGRMFSPLAFTKTYAMAVSAGLAITLVPVLMGYFIRGKIPDENANP 515

Query: 527 PLSRFFLIPDC 537
                  +   
Sbjct: 516 INRWLIALYHP 526



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 88/262 (33%), Gaps = 16/262 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   +   V LS +     +     +  +N        V L+ +   S        + +
Sbjct: 786  PVVTASGGQVALSELADIKVTEGPPMLKSENARLSDWVYVDLRGRDLKSAVTDMQQAVAQ 845

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +         +         + + +L     + + ++   + + +++ F       A+  
Sbjct: 846  QVKLPEGVSLSWSGQFEYLERATAKLK----IVLPVTLTIIFVLLYVTFSTVRD-AALIM 900

Query: 700  LILDITKTLGFFALFGIEFNLTAVAA--VLTLIGYSVNDKVVVYDRMRKNMKLYTT---- 753
              L  +   G + L+G+ +N +  AA   + L G +    V++   + + +K +      
Sbjct: 901  ATLPFSLIGGVWLLYGLGYNFSVAAAVGFIALAGVAAEFGVIMVLYLNQAVKKHQRPGIP 960

Query: 754  --SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVA 808
              +      I +     +     T       +LP+   GG    V+   A PM  G+V A
Sbjct: 961  MTANEMSTAIHEGAVLRVRPKAMTVATIMAGLLPIMWGGGTGSEVMQRIAAPMIGGMVSA 1020

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               S+ +   + + ++    K 
Sbjct: 1021 PLLSMLVIPAVYMLLHKKDRKQ 1042



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 86/289 (29%), Gaps = 15/289 (5%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                          Y         + + A   + + +       +             +
Sbjct: 221 VLEMGAAEYMVRASGYLKTPDDFRNIVITARDGIPILLSDVASLRIGPEMRRGVAELNGE 280

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
             +                +  VK+K+ +I         EIV       LI + I  +  
Sbjct: 281 GEVAGGIIVMRYGQNALETINGVKEKLQQIQRS-LPAGVEIVPVYDRSHLITQAIDSLSF 339

Query: 676 -----SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
                  +  +I     F +  AL AI TL L I          G+  N+ ++  +   I
Sbjct: 340 KLLEEFLVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAI 399

Query: 731 GYSVNDKVVV---YDRMRKNMKLYTTSISFRD-----LIDKSINETLGRSVYTSMAAFIS 782
           G  V+  +V+     ++ +  +      +        + +++  E       + +   +S
Sbjct: 400 GAMVDAAIVMIENMHKVLEQWRRDHPGQTPVSQDYWRISEQAAIEVGPALFCSLLIITLS 459

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+          F+ P+AF    A + S  +A  ++  +  +  +  
Sbjct: 460 FIPVFTLQAQEGRMFS-PLAFTKTYAMAVSAGLAITLVPVLMGYFIRGK 507


>gi|91226391|ref|ZP_01261190.1| putative cation efflux system transmembrane protein [Vibrio
           alginolyticus 12G01]
 gi|91189205|gb|EAS75485.1| putative cation efflux system transmembrane protein [Vibrio
           alginolyticus 12G01]
          Length = 1055

 Score =  131 bits (329), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/590 (11%), Positives = 163/590 (27%), Gaps = 39/590 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N +LV++ ++   +G L ++ N    + +D  P       I                   
Sbjct: 12  NRFLVLVATLALILGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F D         +V  +L  V 
Sbjct: 59  QVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            KL  + K  L    T                     +           ++   +   + 
Sbjct: 119 PKLPPNAKPTLGPDATGVGWVYSYV-LQDKTGKHDLADLRSLQDWFLKYELQTVDGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q   + DP++LR    T  +++      N      +  V            +
Sbjct: 178 ATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGYL 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +I                    + +   E G         D    P        + 
Sbjct: 238 TSIEDIK------------------SLPLKVTEKGTPLLLGDIADINLGPQMRRGISELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   +   +   + +  I       A L+         +           +     
Sbjct: 280 GEGEAVGGVIVMRFGENASEVIAKVKDKLADLQRSLPEGVEIVATYDRSTLIDSAVENLW 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
              A    +V I+  + + + +  LV   S+ + ++    ++   G    + S+ GI + 
Sbjct: 340 KKLAEEFIVVAIMCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F 
Sbjct: 400 IGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVFA 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  +   AI++V  +M + IR K +             +  
Sbjct: 460 LEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLPEHKNPVNRSLVALYR 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +    ++     + I++     +       G  +      G  + +   
Sbjct: 520 PLLNTSLKYPKTMIVIALGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTT 569



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 80/291 (27%), Gaps = 20/291 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  +                   +    L    +V + I
Sbjct: 816  WVFVDIDGRDLGSYVVEAQQVVADQLELPAGYSLAWSGQYEYMERAKDRL--SVVVPITI 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYS 733
            + I +L+Y   R         I  L L +    G     +    F++      + L G +
Sbjct: 874  AIIMLLLYFSFR---RVGEVMIIMLTLPLAMVGGLWLMHILNYNFSIAVGVGFIALAGVA 930

Query: 734  VNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++   +           +  +    +    D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHYKKLDAEESQQKLEAKDLTDAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+      G  V+   A PM  G+  A   ++ +   I         + +
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQSELRQS 1041



 Score = 48.1 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++     +   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVIAKVKDKLADLQRSLPEGVEIVATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDSAVENLWKKLAEEFIVVAIMCALFLFHIRSSLVIALSLPVGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|223934900|ref|ZP_03626819.1| acriflavin resistance protein [bacterium Ellin514]
 gi|223896353|gb|EEF62795.1| acriflavin resistance protein [bacterium Ellin514]
          Length = 1073

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 77/642 (11%), Positives = 173/642 (26%), Gaps = 52/642 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+   ++  +      P  L ++  D FP+                  ++ + 
Sbjct: 8   LRRPYTFVVAAIVLVLL-----TPFILLRTPTDIFPNINIPV-----------VSIIWQY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             +D  +     L  +   L + +        +       I +        +    ++T 
Sbjct: 52  AGLDAQEIEQRILYNHERSLSATVNDIEHIESNSYNGVGIIKVFLQQGASVDAGVAQITA 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q +  ++       L++      + I+       ++     E            +   
Sbjct: 112 VAQTILRQMPPGQTPPLIIRYNASTVPILQYSVTSKKLAEQ--ELYDLTQNAVRVGLSTV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +              +  + D   L+    T  ++       N         +       
Sbjct: 170 QGAALPWPYGGKTRVVSVDLDLPALKAKNLTPQQVVDAISSQNVILPSGTAKI------- 222

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                        G        N  PK  + + D+   ++     +      +       
Sbjct: 223 -------------GSTEFNIELNTSPKLLEELNDLPIKQVNGATIYVRDVAQVRDGFQPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    ++        L     P                
Sbjct: 270 QNIVRKDGVRGALLTVLKTGSASTLEVVKGIKKALPPLLTTLPPELEVREFADQSLFVRA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S       + A L  +++ + +   +   +   SI L+V+ +LA LS LG T+ L ++
Sbjct: 330 AISGVVKEGLVAAALTAVMILLFIGSWRSTFIIAISIPLSVLASLATLSALGETINLMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E +  +    + +  ++  G        F S +   I  V +
Sbjct: 390 GGLALAVGILVDDATVEIENVHRQMGLGKPLEQAILDGAQEIALPAFVSTLCICIVFVPM 449

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--------DIN 526
           FF    G       A  +  ++L S   + +++  M+ +  +                  
Sbjct: 450 FFLTGVGRYLFVPLAEAVVFAMLASYVLSRTLIPTMVKWFYKDVNFAHFHGPVDYKNSSA 509

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            L  F +I D     F + R     +        I       +     +    QLG    
Sbjct: 510 WLRPFLMIQDRFERGFDKLRAGYRNLLCAILEYRITFAILFLVLCIGSWFLIPQLGQDFF 569

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
             VD    R ++ +     +       ++      Q  P D 
Sbjct: 570 PNVDAGQFRLHMRARSGTRVEETANLVDQIEQAIRQDIPRDE 611



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 67/168 (39%), Gaps = 7/168 (4%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             ++++G+V   ++A+ +L++I     W        ++ L +  +L   +  G   NL  
Sbjct: 332 SGVVKEGLVAAALTAVMILLFIG---SWRSTFIIAISIPLSVLASLATLSALGETINLMT 388

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +  +   +G  V+D  V  + +    +           I     E    +  +++   I 
Sbjct: 389 LGGLALAVGILVDDATVEIENVH---RQMGLGKPLEQAILDGAQEIALPAFVSTLCICIV 445

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +PM    G     F +P+A  +V A  +S  ++  ++  +  W  K+
Sbjct: 446 FVPMFFLTGVGRYLF-VPLAEAVVFAMLASYVLSRTLIPTMVKWFYKD 492



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 7/164 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +G+  + + + + + + F  W      IT L   +        L     ++ A+   +  
Sbjct: 896  IGLCGAIVLIYLLLVVNFQSWLDPFIIITALPGALAGVTWGLYLTFTTLSVPALMGAIMS 955

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + V+V    R N++   + +        +    L   + T++A  I +LPM++ 
Sbjct: 956  MGVATANAVLVVSFARSNLQ---SGMDPIKAALTAGAGRLRPVLMTALAMVIGMLPMSLG 1012

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               GG         +  G+V A  +++F    +   ++    K 
Sbjct: 1013 LGEGGEQNAPLGRAVIGGLVFATVATLFFVPVVFSLMHRRAGKP 1056


>gi|160897188|ref|YP_001562770.1| CzcA family heavy metal efflux protein [Delftia acidovorans SPH-1]
 gi|160362772|gb|ABX34385.1| heavy metal efflux pump, CzcA family [Delftia acidovorans SPH-1]
          Length = 1043

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 85/650 (13%), Positives = 193/650 (29%), Gaps = 46/650 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N  ++++  +++   G + A      ++ +D FP       +   L   GG       
Sbjct: 10  LHNRLFVLVFAAILLVYGAITAW-----RTPVDVFPDL--NKPLVTVLTEAGGM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   + +              + +   F            V+  L 
Sbjct: 57  -APEEVEQLVTFPLETALNGMPGVTRVRSMSGVGLSIVYAEFDWGTDVYRNRQLVSERLS 115

Query: 121 GVNSKLNVDPKK--NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
               +L  D       + +   + + + L     +   +  +E           ++    
Sbjct: 116 LARERLPADVNPMMGPVSSIMGEIMLLALPLQGTEGGTATPMEAREYADFVLRPRLLSIP 175

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q +     + QL  E D +R+ Q   +  ++       +++  G    +        
Sbjct: 176 GISQVIPIGGDVRQLRVEPDTARMAQFGVSLTEVEDALRGFSSNAGGGFIDLNSREFLIR 235

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           +        ++ G                          G     E              
Sbjct: 236 HVGRTNRVEDLQG-------------------IAVAWRNGRSILLEQVAQVSFAAGMKRG 276

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
           DG    AP +  ++    A  +   T      L  + +     ++   V  +       S
Sbjct: 277 DGGYNGAPAVVVSVQKQPAGDTVVLTQAIESALEELKQGRPAGLQEPRVLFKQADFIKAS 336

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                      A +V IVLF  +L  +  L++  +I L++ +T  +  LLG ++ + ++ 
Sbjct: 337 VGNVSEALRDGAIMVAIVLFAFLLSARTTLISLVAIPLSLAVTAVVFKLLGQSINVMTLG 396

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALI 472
           G+ + IG  VD  ++  E I    ++N+      S    +        S I  + I   +
Sbjct: 397 GLAIAIGELVDDAVVDVENILRRLKQNRQLPRPLSTMEVVRHASIEVRSGIVYATIIVCL 456

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             V LF      G       I   +SIL SM  ++++   M  +++   +      + L 
Sbjct: 457 VFVPLFALPGIEGRLFTPLGIAYIVSILASMLVSMTVTPVMSSYLLPKMRRIDHGDSTLV 516

Query: 530 RFFLIPDCI--AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 D    +  F R +      ++  +  +  + F          +G + LG++ N 
Sbjct: 517 THLKRWDEALLSWSFPRTKILLCAAALAVAGAAASVPFFPRAFLPAFNEGSLVLGMVFNP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              L+         +                 R +         +  +++
Sbjct: 577 GTSLAEANRMGSLAETLIKEVPEVTQVGRRTGRAELDEHAEGVHSAEIDV 626



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 86/262 (32%), Gaps = 14/262 (5%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           ++ G  + +     V  +      +    G  +      ++     +        A   +
Sbjct: 253 WRNGRSILLEQVAQVSFAAGMKRGDGGYNGAPAVVVSVQKQPAGDTVVLTQAIESALEEL 312

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
            +     + E   L    +          E +R G + V I   A L+           L
Sbjct: 313 KQGRPAGLQEPRVLFKQADFIKASVGNVSEALRDGAIMVAIVLFAFLL------SARTTL 366

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKL 750
            ++  + L +  T   F L G   N+  +  +   IG  V+D VV    +  R+++N + 
Sbjct: 367 ISLVAIPLSLAVTAVVFKLLGQSINVMTLGGLAIAIGELVDDAVVDVENILRRLKQN-RQ 425

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVV 807
               +S  +++  +  E     VY ++   +  +P+    G     F    I     I+ 
Sbjct: 426 LPRPLSTMEVVRHASIEVRSGIVYATIIVCLVFVPLFALPGIEGRLFTPLGIAYIVSILA 485

Query: 808 AASSSIFIAAPILLFIYDWRAK 829
           +   S+ +   +  ++     +
Sbjct: 486 SMLVSMTVTPVMSSYLLPKMRR 507



 Score = 42.4 bits (97), Expect = 0.36,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 58/146 (39%), Gaps = 7/146 (4%)

Query: 687  RFKWYFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            R+K       I   I L +  ++    +  I  ++ ++   +TL G +  + ++      
Sbjct: 880  RYKSVTLAAIIMANIPLALIGSVVAMWIGDISLSVASMVGFITLAGIATRNGILKVSHYI 939

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPM 801
             N+  +      + ++ +   E L   + T++ A  ++ P+ +     G  ++   A+ +
Sbjct: 940  -NLCKFEGETFDQAMVVRGSLERLTPVLMTALVAAFALTPLLLSADAPGKEILHPVAVVI 998

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWR 827
              G+V +      +  P++   +  +
Sbjct: 999  FGGLVSSTLLDT-LMTPLMYLRFGRK 1023


>gi|94263502|ref|ZP_01287314.1| Acriflavin resistance protein [delta proteobacterium MLMS-1]
 gi|93456140|gb|EAT06283.1| Acriflavin resistance protein [delta proteobacterium MLMS-1]
          Length = 1055

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/495 (13%), Positives = 146/495 (29%), Gaps = 35/495 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           Q  +  FP   P                       + V   +    +E  + +       
Sbjct: 32  QLPVQLFPDTDPPMVT---------VITPYPGMAAEDVAENISKLMEEEFAGIDGVRNLR 82

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
            + R+    + + F   R     A +V   +  +   L     +  +   +  +  IV  
Sbjct: 83  STSREGLAVVEVEFHYGRDSTTGAMEVQNAVNRIRPNLPAAMGEPEIQEFSSAQRPIVTL 142

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
               D++    + Q  E   +  D++ +              +QL  +    RL     +
Sbjct: 143 ALTSDELPLPRVRQLAE--NRVQDRLNLVAGVAAVDVIGGHRLQLEVQLQRDRLANHGIS 200

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
             ++                         G            G        +   +    
Sbjct: 201 QEQVIAAL--------------------QGWNLTAGGGRSREGAREVVVRFDTPLRDAAD 240

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
             D+  +  G +         +                         + + +     +  
Sbjct: 241 AADLVLERRGEQLLRLGDVARVRLVPGEDRAAYHYHGEPAIAVQVLKRDEANTVAVADRI 300

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             + A L+A    +   + E  +        +    T A   GL ++V+ + +   +  L
Sbjct: 301 FAVLAELQAAEPAVSFAVAE-DDSAFTRVVITSMTTTIAAAIGLTMLVVLLFLGNLRQAL 359

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           V   +I +  + T  L+ L G  L + +++ I+L IGL VD +I++ E I        + 
Sbjct: 360 VVATTIPVTFLATFGLMRLAGLQLDMVTMSAIILAIGLLVDDSIVILENIHRRWEAGLTP 419

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAIS 505
             +   G     +      +T L   + L F G   G   R  A+T+  ++  S+  A++
Sbjct: 420 EMAAIEGTGEVTAAKIGGTVTTLAVLLPLTFLGGFIGELFRPLALTLTFALASSLVVALT 479

Query: 506 IVRAMMIFIIRYKKM 520
           +V  +   +   ++ 
Sbjct: 480 LVPLLATMLFSRRQP 494



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 91/274 (33%), Gaps = 8/274 (2%)

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
            ++              + L     + + L  V            ++         +  L
Sbjct: 227 VVVRFDTPLRDAADAADLVLERRGEQLLRLGDVARVRLVPGEDRAAYHYHGEPAIAVQVL 286

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-KGIVGVIISAIAM 680
           +    ++VA    +  V  ++    P  +    E         +      +   I    M
Sbjct: 287 KRDEANTVAVADRIFAVLAELQAAEPAVSFAVAEDDSAFTRVVITSMTTTIAAAIGLT-M 345

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           L+ +        AL   TT+ +    T G   L G++ ++  ++A++  IG  V+D +V+
Sbjct: 346 LVVLLFLGNLRQALVVATTIPVTFLATFGLMRLAGLQLDMVTMSAIILAIGLLVDDSIVI 405

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSF 797
            + +    + +   ++      +   E     +  ++     +LP+   G   G +    
Sbjct: 406 LENIH---RRWEAGLTPEMAAIEGTGEVTAAKIGGTVTTLAVLLPLTFLGGFIGELFRPL 462

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           A+ + F +  +   ++ +   +   ++  R  +A
Sbjct: 463 ALTLTFALASSLVVALTLVPLLATMLFSRRQPSA 496



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 56/150 (37%), Gaps = 6/150 (4%)

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
            +         L  +T + L          + G   ++ A+  ++ L+G  VN+ +++ D 
Sbjct: 909  MVQFRSLAQPLVIMTAIPLQFIGVAAALTMAGKYLSMPALLGIVLLVGIVVNNSIILVDF 968

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
            +   +      +     +  ++       + T+++    +LP+A+    G       A  
Sbjct: 969  I---IARRRQGLPLEQAVPAAVAARFRPVMMTALSTVAGMLPLALELAVGSERFSPIATV 1025

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +  GI+ +   ++ +   +L  ++    + 
Sbjct: 1026 IIGGILASTLLTLVVIPVLLQQVFTRADER 1055



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 57/475 (12%), Positives = 139/475 (29%), Gaps = 33/475 (6%)

Query: 48   LDLRGGSHLVLEVDEDDFVNGFL--QMYSDELRSFLK-KEGIGV----FSMRQIQNKITL 100
            LD+  G+ L         V   +  +   D L + +  + G        +M   Q +I++
Sbjct: 593  LDVVPGTPLEQTRQTVAAVEEQILAESAVDSLATRIGYEAGARYLGGRGAMDTHQAEISV 652

Query: 101  SFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
                   ++     +   L+     L        +            +   I ++     
Sbjct: 653  ELIPRNRRDESQWSIMERLRRSVQNLPGIT--LGVFQEQGGTARATTAAPIIVEISGPEP 710

Query: 161  EQSMEIIRQRIDQIGISESTIQRLGSHRIL-IQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
            ++  E+    + ++G          +  +   +     D  R  +L              
Sbjct: 711  DRLAEMADHTVRRLGEISGVRDPYRNWNLDRPETRVIIDRERAAELGL------------ 758

Query: 220  NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
                 G        R  DG       +  +  + +    A  D    + + ++       
Sbjct: 759  ----NGGTIAATARRALDGETVTPYRQRGLRDLEVTVRYAAEDRHQRQGLENVVLPGPDG 814

Query: 280  RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
                 V            L  R      +     +   +       +   +L  +     
Sbjct: 815  ESVRLVDLAEFVPVYGPSLVSRENFRRTLEVRAWTDGRRPLSQVVADIERMLPDISVPEG 874

Query: 340  LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
              +     ++    A              V  L+++            LV   +I L  I
Sbjct: 875  YRLAAGGEQQDLAEARGRLLRALAAAAVAVYLLLMV----QFRSLAQPLVIMTAIPLQFI 930

Query: 400  LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
               A L++ G  L++P++ GIVL +G+ V+++I++ + I    R+   +  ++    +  
Sbjct: 931  GVAAALTMAGKYLSMPALLGIVLLVGIVVNNSIILVDFIIARRRQGLPLEQAVPAAVAAR 990

Query: 460  YSTIFDSNITALIATVVL---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
            +  +  + ++ +   + L      G       A  +   IL S    + ++  ++
Sbjct: 991  FRPVMMTALSTVAGMLPLALELAVGSERFSPIATVIIGGILASTLLTLVVIPVLL 1045


>gi|226940214|ref|YP_002795287.1| drug efflux pump transmembrane protein [Laribacter hongkongensis
           HLHK9]
 gi|226715140|gb|ACO74278.1| probable drug efflux pump transmembrane protein [Laribacter
           hongkongensis HLHK9]
          Length = 994

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/550 (12%), Positives = 158/550 (28%), Gaps = 29/550 (5%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           L     + +   +    +     +        +       ITL F   R     A  V  
Sbjct: 15  LPGASPETMAAAVATPLERTLGRIAGITEMTSTSTLGATSITLQFDLDRDINGAARDVQA 74

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    + L      N          S V+    +        +           ++   
Sbjct: 75  AINAARTLLPSGMPSNPGYRKVNPADSPVMI-LAMTSKTLTPSQMYDAADSVLGQKLAQV 133

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     +        +  + +P++L Q       +       N  +   +          
Sbjct: 134 EGIGNVIIGGGAQPAVRVDINPAQLAQYGLALEDVRSVIAGSNLKRPLGVLDSAGQHWQV 193

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                ++                      +  + +                 +   +  +
Sbjct: 194 QTNDALKTA--------------------RDYLPVIVSYRHGAPVRLAQVAGVSDSVLDI 233

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L        I   +   +   T++    L   L+A         V          
Sbjct: 234 RTAGRLGREPAVMLILFKQPGANIIETVDRVRALMPQLQAWLPAAIELQVVSDRTPTIRA 293

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +    + T A+  GLV++V+ + +  G+   +   S+ ++++ TLA + L G +L   S+
Sbjct: 294 ALREVEKTLALSVGLVVLVVALFLKSGRAVAIPAISVPVSLLGTLAGMYLCGYSLNTLSL 353

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + +  G  VD  I+V E I     +  +   +   G      T+   +++ +   + +
Sbjct: 354 MALTVATGFVVDDTIVVLENITRYLEEGMAPLEAARRGVREVGFTVVSMSLSLIAVFIPV 413

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDINPLS 529
              G   G   R FA+T+ ++ILISM  +++    +    +R       +    +   L 
Sbjct: 414 LLMGGIIGRLFREFAVTLSVAILISMLVSLATTPMLCARWLRPVPADTGEPSRRERFWLG 473

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                   +       R   + ++ +  +     L      +     G +   + A++ +
Sbjct: 474 LRKDYDASLEWSVSHGRTMLLLLAGVVVLNVFLYLVVPKGFFPQQDTGRLNGLIKADQEI 533

Query: 590 DLSVVRSNLE 599
               ++  L+
Sbjct: 534 SFDAMKDKLD 543



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 53/134 (39%), Gaps = 6/134 (4%)

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
               ++ + +  TL    L G   N  ++ A+    G+ V+D +VV + +    +     
Sbjct: 325 IPAISVPVSLLGTLAGMYLCGYSLNTLSLMALTVATGFVVDDTIVVLENI---TRYLEEG 381

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASS 811
           ++  +   + + E     V  S++     +P+ + GG +      FA+ ++  I+++   
Sbjct: 382 MAPLEAARRGVREVGFTVVSMSLSLIAVFIPVLLMGGIIGRLFREFAVTLSVAILISMLV 441

Query: 812 SIFIAAPILLFIYD 825
           S+     +      
Sbjct: 442 SLATTPMLCARWLR 455



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/202 (16%), Positives = 87/202 (43%), Gaps = 6/202 (2%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A +   E +  K+  +   + ++ +     K+ +E +      ++ + +A+ I + + ++
Sbjct: 776 ALSEAAEAIGAKVEALGLGTGVRGSFQGTAKVFQESLANQPWLILAAVVAVYIVLGMLYE 835

Query: 690 -WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              +    ++TL       L    L G EFN+ A+  +L L+G    + +++ D      
Sbjct: 836 SLIYPFTILSTLPSAGVGALLALMLAGQEFNVIALIGILLLVGIVKKNAIMMID--FAIS 893

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                 ++ RD I ++        + T++AA    +P+A+    G  +     I +  G+
Sbjct: 894 AQRDKGLTPRDAILEAARLRFRPILMTTLAAVFGAIPLALGQGDGAEIRAPLGISIVGGL 953

Query: 806 VVAASSSIFIAAPILLFIYDWR 827
           +V+   +++    + L++  +R
Sbjct: 954 LVSQLLTLYTTPVVYLYLDRFR 975


>gi|251778485|ref|ZP_04821405.1| putative multidrug efflux pump, membrane protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243082800|gb|EES48690.1| putative multidrug efflux pump, membrane protein [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 1067

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/654 (9%), Positives = 180/654 (27%), Gaps = 46/654 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++++ ++   G +        +   +  P       +                 
Sbjct: 9   KRPLTIIMVFLVVIMFGYI-----GYTKMPANLMPDIEVPVVL---------VTTQWSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +E  S +      V   ++  + +   F        I + V   +  
Sbjct: 55  GPEDIDEQISEKIEEKLSAVSNVKKTVSMSQESVSMVVAQFEYGTDLNEILNDVRSKVDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D  K+ ++       +I     +        ++           ++       
Sbjct: 115 VQSTLPDDVTKSTVLKMDMNAQAISQLVISGGHSSEALMK---YAEDTIQPKVESVGGVT 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     Q+    DP+ L     +   +                             
Sbjct: 172 EAGINGGDKSQVNITVDPAILSNYGVSIQTIQNVLAA--------------------TNK 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G          +  + + V  +     G +        ++           
Sbjct: 212 TFPYGSITQGEDKIVLRGIDELNSLEDVKQVQIPVSGGKTVRLDKICDVEYGFVEKQAIY 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++        L + +   K+ +    +      S   
Sbjct: 272 RYNGKNSLVIDIQKQQDANTVQVMKDVHKTVEKLNSENPEYKIEV-VNDSSEYINDSIKS 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                AI A +  +V+F+ +   +  LV   +I  ++I  +ALL   G TL + ++  +V
Sbjct: 331 VMQNLAISAIISFLVIFLFLKSMRASLVVAIAIPTSIIGAIALLYFTGETLNMVTLGSLV 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + +G+ VD+  ++ E I +  R     ++     G     + I  S +T +   + + F 
Sbjct: 391 IAVGMVVDNATVIIENIFQYRRDTTLDIYDCSIKGAQTVTNAIVASTLTTVAIFLPILFT 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSRFFL 533
            G         A T+  ++ +S+  A+++V ++   + +    K +              
Sbjct: 451 DGFTKIMFGALAKTLIYALSLSLIVAVTLVPSIFAKLSKGTNAKKLVEKPSPVFDKFNDK 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + + +     +   +   +LF                   +G + + +     ++L+ 
Sbjct: 511 YKNILKVALNHKKVVVLISILLFVASIFGATLIGMDFMASTDEGKLSVSISLPEGLELNA 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +   +               L        ++   +  L    ++      
Sbjct: 571 SDYYVSMAEDKISDIPEIKTIMTTLASASRSGSNNANISIELVPENERKKSTND 624



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 90/252 (35%), Gaps = 6/252 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         V       + + D        + ++ + +     +    T   + +   
Sbjct: 760  QIKIVSQSGQEVPVVAFADITMEDSLKSISKSDGDYTITISATVDNLDTSTASKQAM-NA 818

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
            I E+        +     ++  E +   I  ++++ I + + +  +F+ +      +  +
Sbjct: 819  INELDMPRDYGISFGGATEMMNESMGGLIFAMVVAIILVYMVMVAQFESFSKPFIIMFCI 878

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   +    +     N+  +   + L+G  VN+ +V+ D + + ++    + +  ++
Sbjct: 879  PFAFVGVVIALVITRANLNVVGMLGSILLVGIVVNNGIVLIDYI-EQLRKAKPNENLIEI 937

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +    +  L   + T+M   + ++P A+    GG  +   A+ +  G+ V+   ++ +  
Sbjct: 938  VSIGSSTRLRPVLMTTMTTVVGMIPTALSFGSGGETMQPLAVVIIGGLSVSTVVTLILIP 997

Query: 818  PILLFIYDWRAK 829
             I +       K
Sbjct: 998  TIYMIFDKVEKK 1009



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 90/255 (35%), Gaps = 9/255 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            +Q+ V   + V L  +             ++        +   + Q  ++V   + +  
Sbjct: 241 QVQIPVSGGKTVRLDKICDVEYGFVEKQAIYRYNGKNSLVIDIQKQQDANTVQVMKDVHK 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELI---RKGIVGVIISAIAMLIYIWIRFKWYFAL 694
             +K+    P   I+        I+  +    +   +  IIS + + +++        +L
Sbjct: 301 TVEKLNSENPEYKIEVVNDSSEYINDSIKSVMQNLAISAIISFLVIFLFL---KSMRASL 357

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                +   I   +      G   N+  + +++  +G  V++  V+ + + +  +   T+
Sbjct: 358 VVAIAIPTSIIGAIALLYFTGETLNMVTLGSLVIAVGMVVDNATVIIENIFQYRR--DTT 415

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
           +   D   K         V +++      LP+    G     F   +A  ++ A S S+ 
Sbjct: 416 LDIYDCSIKGAQTVTNAIVASTLTTVAIFLPILFTDGFTKIMFG-ALAKTLIYALSLSLI 474

Query: 815 IAAPILLFIYDWRAK 829
           +A  ++  I+   +K
Sbjct: 475 VAVTLVPSIFAKLSK 489


>gi|323498963|ref|ZP_08103946.1| hypothetical protein VISI1226_07348 [Vibrio sinaloensis DSM 21326]
 gi|323316075|gb|EGA69103.1| hypothetical protein VISI1226_07348 [Vibrio sinaloensis DSM 21326]
          Length = 1039

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 77/646 (11%), Positives = 175/646 (27%), Gaps = 39/646 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N +LVI+ ++    G L ++ N    + +D  P       I                  
Sbjct: 11  SNRFLVIIATLALVFGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     E           ++   +   +
Sbjct: 118 APKLPPNAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNQAISKGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +     G         D    P        +
Sbjct: 237 LSSIEDIE------------------SLPVKVTTTGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+      A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIDKVKTKLADLQRSLPDGVEIVATYDRSTLIDAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVISKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLPEHKNPVNKGLVGLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    +R     + +++   + +       G  +      G  + +    P       
Sbjct: 519 RPLLNLSLRFPKTMIVVALGLMLSAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             L       I            +       D    T +  +++ K
Sbjct: 579 RELLQQTNKLIKTVPEVETVWGKIGRAETATDPAPLTMIETVIQFK 624



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 76/290 (26%), Gaps = 22/290 (7%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVAEIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        + ++                   +    L       V++
Sbjct: 816  WVFVDIDGRDLGSYVVEAQQIVAEQLQLPAGYSLAWSGQYEYMERAKDRL------SVVV 869

Query: 676  SAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGY 732
                ++I + + F +       I  L L +    G          F++      + L G 
Sbjct: 870  PITLVIIMLLLYFSFRRVGEVMIIMLTLPLAMVGGLWLMHYLNYNFSIAVGVGFIALAGV 929

Query: 733  SVNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
            +V   V++   +           +            + I +     +   + T +   I 
Sbjct: 930  AVEIGVIMLVYLNQAWHYKKLNAEEQGQLLQEHDLTEAIREGAGLRVRPVMMTVLTVIIG 989

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            ++P+      G  V+   A PM  G+  A   ++ +   I         K
Sbjct: 990  LIPIMYGDGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKRREVK 1039



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 65/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++     +   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVIDKVKTKLADLQRSLPDGVEIVATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDAAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVISKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|16127350|ref|NP_421914.1| AcrB/AcrD/AcrF family protein [Caulobacter crescentus CB15]
 gi|221236155|ref|YP_002518592.1| cation/multidrug efflux pump AcrB5 [Caulobacter crescentus NA1000]
 gi|13424780|gb|AAK25082.1| AcrB/AcrD/AcrF family protein [Caulobacter crescentus CB15]
 gi|220965328|gb|ACL96684.1| cation/multidrug efflux pump acrB5 [Caulobacter crescentus NA1000]
          Length = 1022

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 79/683 (11%), Positives = 181/683 (26%), Gaps = 46/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + ++ + ++  +G      N          P       I            VL   
Sbjct: 11  RRWQFTLVAFGLLVMLG-----FNAFTSIPRSEDPHFPIPIVI---------VRAVLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           E   +   +    ++    L                +++ F      E   D+V   +  
Sbjct: 57  EPSEMEQLVVDPIEDAVDGLDNIEKVESVSLDGAAVVSVHFTWDVDPERKYDQVVREVNA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L     +  +      E+S+V      D +    +E+  + +R+R+D+        
Sbjct: 117 IRGNLPTGLARLDIQRARTTEVSVVQVALTSDTLPMRRLEKVADRLRERLDR---VPGVR 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    D +RL  L      ++                            
Sbjct: 174 EAQYWGAPPSDVQVTLDLARLSALKLPATAVTDALRAAGAEAPIG--------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G       +    +  K + D     +G +         IG          
Sbjct: 219 -----AVQAGERRFNVKSGGAFRDLKTIGDTPVRSIGGKVVRVSDVATIGWAQQEPTHVT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         K         +    +                              
Sbjct: 274 RFNGKRAVFITVKQKDGQDVAKITQEVRKVLDEYERALPAGVKLERAFFQAENVKHRLKN 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     LVL+++ ++ L  + G+V   SI L++++ L++L   G TL   SIAG V
Sbjct: 334 LFRD--FGIALVLVLITLLPLGPRAGVVVMVSIPLSLLIGLSMLQAFGFTLNQLSIAGFV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD +I++ E I    R+ +    +   G  +    +     T ++A + L    
Sbjct: 392 LSLGLLVDDSIVITENIARRIREGEERTEAAVNGARQIGLAVVGCTATLMLAFLPLMALP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLSRFFLI 534
              G  ++   +T+  ++  S+  +++I+  +   I+           +           
Sbjct: 452 AGSGAYIKSLPVTVLCTVGASLLVSLTIIPFLASRILDKHSDPEGNALLRAVNGGIQRFY 511

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +     R       +  L +     +       +         + +       L+  
Sbjct: 512 RPVLHASLARPWLALALMLALCATTVPLVKVIGSSLFPPAETPQFLIRIETPDGASLART 571

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              L  +              + L R   Q   +  Q        +           ++ 
Sbjct: 572 DQALRFVDARLAKEPEILWRASNLGRGNPQIFYNKTQRESSNSFAEVYASFEAWKPGKSD 631

Query: 655 EIVGPKISRELIRKGIVGVIISA 677
           +++    +      G    +++ 
Sbjct: 632 KVLDALRADFAKYPGARITVVAF 654



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 84/256 (32%), Gaps = 11/256 (4%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            +   G   +  +  + V +S V +   + Q      +       F+   Q    D    
Sbjct: 237 DLKTIGDTPVRSIGGKVVRVSDVATIGWAQQEPTHVTRFNGKRAVFITVKQKDGQDVAKI 296

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
           T+ +  V  +    +P            +  +  ++       I+ + +LI + +     
Sbjct: 297 TQEVRKVLDEYERALPAGVKLERAFFQAENVKHRLKNLFRDFGIALVLVLITL-LPLGPR 355

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  + ++ L +   L     FG   N  ++A  +  +G  V+D +V+ + +    +  
Sbjct: 356 AGVVVMVSIPLSLLIGLSMLQAFGFTLNQLSIAGFVLSLGLLVDDSIVITENI---ARRI 412

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
                  +       +     V  +    ++ LP+          I S  + +   +  +
Sbjct: 413 REGEERTEAAVNGARQIGLAVVGCTATLMLAFLPLMALPAGSGAYIKSLPVTVLCTVGAS 472

Query: 809 ASSSI----FIAAPIL 820
              S+    F+A+ IL
Sbjct: 473 LLVSLTIIPFLASRIL 488



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 89/218 (40%), Gaps = 8/218 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-VG 672
            ++   V +           +V + V +++ + VP+       + G   ++     G+   
Sbjct: 806  DRERTVTVTSYVATGYLTAKVTQDVVQRLEKEVPMPPGYRLSLGGQAEAQSESFAGLGAA 865

Query: 673  VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
            V+++   +L  + + F+  F    +   I+         AL   G   + TA   ++ LI
Sbjct: 866  VLVAIFGILAVLVLEFQ-KFKTALVVAGIIPFGIFGAVLALALTGNSLSFTATIGLIALI 924

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
            G  + + +++ D   + ++     ++  D I+K+        + TS+ A   +LP+A+  
Sbjct: 925  GIEIKNSILLVD-FTEQLR--REGMNLHDAIEKAGEVRFLPVLLTSVTAIGGLLPLALER 981

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              +    AI +  G++ +   S  +A P++ ++     
Sbjct: 982  SGLYSPLAIAIIGGLITSTLLSR-VATPVMYWLTARGK 1018


>gi|167572871|ref|ZP_02365745.1| hydrophobe/amphiphile efflux family protein [Burkholderia
           oklahomensis C6786]
          Length = 1036

 Score =  131 bits (329), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 62/558 (11%), Positives = 161/558 (28%), Gaps = 32/558 (5%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +E D        +         +  +          +  Q ++ +      +   +  
Sbjct: 58  ISVETDYPGASQDLMQGFVTTPIAQSIATADGIEYITSTTTQGKSIVKARLRLNANADRA 117

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             +V   +Q V  KL  D   +++   T+   +++      D +     + +  ++R   
Sbjct: 118 MTEVMAKVQQVKYKLPADAYDSVITKLTDAPTAVMYLGFASDTL--SIPQITDYVVRVAQ 175

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
             +                + +    D +RL     +   ++      N           
Sbjct: 176 PLVTTVPGVASAEILGGQNLAMRVWLDATRLAAHGLSAGDVAAAIRANNVQAAPGQVKGS 235

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                      + D    +                   + +  D  G           + 
Sbjct: 236 LTIADISANTDLTDVGAFN------------------EMVVKSDPNGGGLVRLKDVATVE 277

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                     ++          +     +    +     +   +                
Sbjct: 278 IGGENYNSSALMNGRRAVYIAVNATPAGNPLEIVRGVDAVLPAMERNKPASIQIANMFDG 337

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S +  + T A    +V++V+F+ +   +  ++   +I L+++ + AL+   G +
Sbjct: 338 ARFVNASIAEVRSTLAEAIAIVVVVIFLFLGSFRAVIIPVLTIPLSLVGSAALMLAAGFS 397

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L L ++  +VL IGL VD  I+V E I     + +    +  +G     S +     T +
Sbjct: 398 LNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGEPPARAALIGAREIASPVLVMMATLI 457

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSI 523
                +   G   G   + FA T+  ++L+S   A+++   +   ++  K       K+I
Sbjct: 458 SVYAPIGLMGGLTGSLFKEFAFTLAGAVLVSGIVALTLSPMLGSLLLTSKMSEGRVAKAI 517

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
           +        +    +           +    + +   +            + +G I + V
Sbjct: 518 EHTLERVTQVYRRGLHASLAARPAILLIGVGVLAGIVLLFSGVKRELAPQEDQGSIMVAV 577

Query: 584 LANRPVDLSVVRSNLESL 601
            A +  +L  +      +
Sbjct: 578 KAPQYANLDYMERYAPDI 595



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 71/205 (34%), Gaps = 9/205 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             VL  +++     + ++ + +          E+       + I  + + +++     + 
Sbjct: 315 DAVLPAMERNKPASIQIANMFDGARFVNASIAEVRSTLAEAIAIVVVVIFLFLG---SFR 371

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +  + T+ L +  +       G   NL  + A++  IG  V+D +VV + +    +  
Sbjct: 372 AVIIPVLTIPLSLVGSAALMLAAGFSLNLLTLLAMVLAIGLVVDDAIVVVENIH---RHI 428

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVA 808
                          E     +           P+ + G   GS+   FA  +A  ++V+
Sbjct: 429 EEGEPPARAALIGAREIASPVLVMMATLISVYAPIGLMGGLTGSLFKEFAFTLAGAVLVS 488

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
              ++ ++  +   +   +    R+
Sbjct: 489 GIVALTLSPMLGSLLLTSKMSEGRV 513



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +  +F+     L  + ++ L I   L    L     N+     ++TLIG 
Sbjct: 865  GFALIVIFLVLAAQFESLRDPLVILVSVPLSICGALAPLYLGFATLNIYTQIGLVTLIGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N          R  I+++    L   + T+ A    ++P+    G 
Sbjct: 925  ISKHGILMVS--FANDLQRHEGFDRRAAIERAAAVRLRPILMTTAAMVAGLVPLVFAAGA 982

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V    ++F+   +  F+  
Sbjct: 983  GAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFVAK 1018


>gi|330010864|ref|ZP_08306917.1| hypothetical protein HMPREF9538_04616 [Klebsiella sp. MS 92-3]
 gi|328534360|gb|EGF60967.1| hypothetical protein HMPREF9538_04616 [Klebsiella sp. MS 92-3]
          Length = 426

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 37/449 (8%), Positives = 110/449 (24%), Gaps = 35/449 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   I   G++           +   P                    +     
Sbjct: 12  RPVATTLLMVAILLAGII-----GYRFLPVSALPEVDYPTIQ---------VVTLYPGAS 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +     +              + +TL F  +   +    +V   +   
Sbjct: 58  PDVVTSAITAPLERQFGQMSGLKQMSSQSSGGASVVTLQFQLTLPLDVAEQEVQAAINAA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D     + +        +++   +        +    +  +   +I        
Sbjct: 118 TNLLPSDLPNPPVYSKVNPADPPIMT-LAVTSSAIPMTQVEDMVETRVAQKISQVSGVGL 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +  + +   +  L  T+  +       N +                    
Sbjct: 177 VTLAGGQRPAVRVKLNAQAIAALGLTSETVRTAITSANVNSAKGSLDGPA---------- 226

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                          +AN   ++ +    +                ++ +       G  
Sbjct: 227 ----------RAVTLSANDQMQSAEDYRRLIIAYQNGAPIRLGDVASVEQGAENSWLGAW 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T ++   +   L           V          S    
Sbjct: 277 ANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRDT 336

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +   LV++++++ +      ++   ++ L+++ T A++  L  ++   ++  + +
Sbjct: 337 QFELMLAIALVVMIIYLFLRNVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMALTI 396

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCS 451
             G  VD  I+V E I     K +    +
Sbjct: 397 ATGFVVDDAIVVIENISRYIEKGEKPLAA 425



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/147 (10%), Positives = 50/147 (34%), Gaps = 6/147 (4%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI----- 666
              +   + +  Q           + +++ + ++           V    +  +      
Sbjct: 276 WANQQRAIVMNVQRQPGANIIDTADSIRQMLPQLTESLPKSVKVQVLSDRTTNIRASVRD 335

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            +  + + I+ + M+IY+++R      +     + L +  T           N   + A+
Sbjct: 336 TQFELMLAIALVVMIIYLFLR-NVPATIIPGVAVPLSLVGTFAVMVFLDFSINNLTLMAL 394

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               G+ V+D +VV + + + ++    
Sbjct: 395 TIATGFVVDDAIVVIENISRYIEKGEK 421


>gi|23012678|ref|ZP_00052704.1| COG3696: Putative silver efflux pump [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1074

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 75/591 (12%), Positives = 166/591 (28%), Gaps = 42/591 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++I        GL            LD  P       I          +      
Sbjct: 21  RNLVLVLIGTVFAVAAGLYAV-----RTLPLDAIPDLSDVQTI---------VYTEYPGQ 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 67  APQVVEDQVTYPLTTAMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLNA 126

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             SKL       L    T        +     + ++        ++R        +E   
Sbjct: 127 AGSKLPSGVTPTLGPDATGVGWVYQYAIVAKQRTLAELRSLQDWVVRF---GASRAEGVS 183

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP+RLR    +  K+       N    G    +         + 
Sbjct: 184 EIASVGGFVKQYNVIVDPNRLRAQGISLDKLREAIRSSNADVGGRTVELSEFEFMVRGRG 243

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +I                      +   + G              P        
Sbjct: 244 YLKSVADIE-------------------NIVLKTDAGTPLRIRDVARVELGPDERRGITE 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    IE      A +          +           +   
Sbjct: 285 MNGEGEVAGGIVLQRFGANALNVIEGVKAKLAEVAKSLPSGTEIVPVYDRSQLIDAAIDT 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T    + +V +V  + +L+ +  LVA   + + +++ L  + LLG    + S+ GI 
Sbjct: 345 LKHTLVEESVIVALVCVVFLLHLRSALVAILMLPVGILMALGAMRLLGIGANIMSLGGIA 404

Query: 422 LGIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + +G  +D+ I++ E   +        +     L    +    ++F S +   ++ + +F
Sbjct: 405 IAVGAMIDAAIVMIENAHKHLERAPPGKPRVEILVEAAAEVGPSLFFSLLVITVSFLPIF 464

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   S+  +   ++++V A+M   +R + +             + 
Sbjct: 465 TLENQEGRLFGPLAFTKTFSMAAAALLSVTLVPALMALFVRGRIVPEHRNPLNRLLIWVY 524

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    +RA+   + ++++    +I      G  +  D   G  + +   
Sbjct: 525 RPVIEGVLRAKVLTIVLAVVVLGLTIWPARQLGSEFMPDLNEGTLMYMPTT 575



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            VI++ + ++  + +R     AL AI  L + I   LG   L GI  N+ ++  +   +G
Sbjct: 353 SVIVALVCVVFLLHLR----SALVAILMLPVGILMALGAMRLLGIGANIMSLGGIAIAVG 408

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             ++  +V+ +   K+++         +++ ++  E      ++ +   +S LP+     
Sbjct: 409 AMIDAAIVMIENAHKHLERAPPGKPRVEILVEAAAEVGPSLFFSLLVITVSFLPIFTLEN 468

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   ++      R
Sbjct: 469 QEGRLFGPLAFTKTFSMAAAALLSVTLVPALMALFVRGR 507



 Score = 43.9 bits (101), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 49/156 (31%), Gaps = 14/156 (8%)

Query: 685  WIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-- 741
            ++ F+        + +L   +   +      G   ++      + L G +    V++   
Sbjct: 888  YLNFRRLTETFIVMLSLPFSLVGGVWLMWWMGFNMSVAVAVGFIALAGVAAETGVIMLIY 947

Query: 742  -----DRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
                 D  R  +               I     E +   + T +A    ++P+      G
Sbjct: 948  LDHAWDEQRAEVASAGREATRADLYRAIMVGAVERVRPKMMTVVAIMAGLVPILWSTGAG 1007

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              V+   A+PM  G+V +   ++ +   I   +   
Sbjct: 1008 SEVMQRIAVPMIGGMVSSTVLTLVVIPAIYGLVKAR 1043


>gi|167720272|ref|ZP_02403508.1| AcrB/AcrD/AcrF family protein [Burkholderia pseudomallei DM98]
          Length = 1048

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 74/590 (12%), Positives = 159/590 (26%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSRNLFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLERSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++  +                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRGLSSEDVRHAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTEPAQWNDAIVAYRDGTPVRIRNIGQAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGRRAISIGIYKKPGANTVSTVDKIRARLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+ + G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I       +    +   G S    TI   +++ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEAGERPLQAALKGLSETSFTIASISLSLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   R FA+T+ ++I++S F ++++   M  +++R  +  +        F 
Sbjct: 450 PLLLMSGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAHRHDAGRPPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 A  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARTAAAYERALDVALRHRFVTLCAFFASVAASVFLYVGIPKGFFPQQ 559



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 65/169 (38%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +    L   + T+M A    LP
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATRERNMTSLDAIRSACLLRLRPIMMTTMTALFGALP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 56/145 (38%), Gaps = 8/145 (5%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +        + G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAVTVPVSLFGACALMWVCGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIP 800
               +             K ++ET   ++ +   + ++VL   +    +I      FA+ 
Sbjct: 413 ---ARHVEAGERPLQAALKGLSET-SFTIASISLSLVAVLLPLLLMSGIIGRMFREFAVT 468

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD 825
           ++  I+V+A  S+ +   +  ++  
Sbjct: 469 LSMTIIVSAFVSLTLTPMMASYLLR 493


>gi|94969858|ref|YP_591906.1| acriflavin resistance protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551908|gb|ABF41832.1| acriflavin resistance protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 1032

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 78/676 (11%), Positives = 180/676 (26%), Gaps = 53/676 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   I   G +      +       FP+      +  GL              
Sbjct: 10  RPVATTLITIAIALAGAVAFGFLPISPLPQVDFPTI----NVRAGL----------PGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +        S       ITL F  +R     A  V   +   
Sbjct: 56  PEIMASSVATPLERQLGHIASVTEMTSSSSLGSTTITLQFDLNRDINGAARDVQAAINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  +   N     +    + ++    +        +           +I       +
Sbjct: 116 RSYLPANLPSNPTYNKSNPGDAPIVI-LAMTSKTYTRGQMYDMASNILAQRISQISGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  E +PS+L       ++++                             
Sbjct: 175 VDVGGSSRPSVRVELNPSQLDHYGIAISQVANMLRAQ--------------------NAN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +      +G       AN           +                ++   +  +     
Sbjct: 215 LAKGQLSNGETTADILANDQMLLAMQYKPLVVGYRNGSAITLSDVADVTDSVQDLRQAGY 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +        I   +   +   T++        L+A         V          S    
Sbjct: 275 VNGKPGILLIVRRQPGANIIATVDAIKDTIPELQASIPTGMNLQVVLDRTTTIRQSVHDV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +   +    + +++I T  ++ L G ++   S+  + +
Sbjct: 335 ERTLIISIMLVIVVVFVFLRDVRATFIPSVVVPVSLIGTFGIMYLCGFSIDNLSLMALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  +   +   G S    T+   +I+ +   + +   G 
Sbjct: 395 STGFVVDDAIVVIENITRYIEEGMAPMQAALRGASEIGFTVMSISISLVAVFIPILMMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   R FA+T+  +I++SM  +++    M   +++++  +      L    L     +
Sbjct: 455 IVGRLFREFAVTLSAAIVVSMVVSLTATPMMCSRLLKHRDEQKHGKIYLWSENLFKGMAS 514

Query: 540 IQFMRARF---------------WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           I     R+                 V I +L  +                 +G   +   
Sbjct: 515 IYERSLRWVLDAPAFVLAILILTVAVNIYLLIIVPKGFFPQQDNGTIFGGAQGAQDISFQ 574

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +   + L  V        + ++         N              +    E+V +   +
Sbjct: 575 SMSKIMLEFVDRIKSDPAVDNVMAFTGGSNTNGGFIFLGLKPLKERKLSATEIVNRLRPK 634

Query: 645 IVPLSTIQNTEIVGPK 660
           ++ L         G  
Sbjct: 635 LLSLPGASAFVQAGQD 650



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 60/152 (39%), Gaps = 10/152 (6%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                       + + +  T G   L G   +  ++ A+    G+ V+D +VV + +   
Sbjct: 354 RDVRATFIPSVVVPVSLIGTFGIMYLCGFSIDNLSLMALTISTGFVVDDAIVVIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
            +     ++      +  +E     +  S++     +P+ + GG V      FA+ ++  
Sbjct: 411 TRYIEEGMAPMQAALRGASEIGFTVMSISISLVAVFIPILMMGGIVGRLFREFAVTLSAA 470

Query: 805 IVVAASSSIFIAAPIL---LFIYDWRAKNARI 833
           IVV+   S+  A P++   L  +    K+ +I
Sbjct: 471 IVVSMVVSL-TATPMMCSRLLKHRDEQKHGKI 501



 Score = 44.3 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 93/282 (32%), Gaps = 8/282 (2%)

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
                              +             V  +      V  S +  L     + Q 
Sbjct: 735  APVSTMYRSLNQYYVVMEVAPAYWQTPEALKNVYVHPANGKPVPLSAIAHLAYNTAALQV 794

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                +   V + +     VA +     + +    +    TI        +  ++ +    
Sbjct: 795  NHQGQYPSVTISFNLAPGVALSDASGRLLQLEQSLGMPPTIHGMFSGTLQAFQDSLSSEP 854

Query: 671  VGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLT 728
            + +I + +A+ I + I ++       I + I    +   L    +F    ++  +  ++ 
Sbjct: 855  ILIITAVLAVFIVLGILYESLIHPVTILSTIPSAGVGAVLALM-IFKASLDVIGIIGMIL 913

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    + +++ D            ++ RD I ++        + T+MAA +  +P+A+
Sbjct: 914  LIGIVKKNAILMID--FALAAEREEGMNSRDAIFRACMLRFRPILMTTMAAMLGAMPLAL 971

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                G  +     I +  G++ +   +++    + L++  +R
Sbjct: 972  GTGAGSELRRPLGITIVGGLIFSQMLTLYTTPVVYLYMERFR 1013


>gi|332306336|ref|YP_004434187.1| heavy metal efflux pump, CzcA family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173665|gb|AEE22919.1| heavy metal efflux pump, CzcA family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1041

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 75/608 (12%), Positives = 168/608 (27%), Gaps = 40/608 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  LV+L + +     L ++     Q+ +D  P       I                  
Sbjct: 11  NNRLLVLLITAMVIALGLFSI----KQTPVDAIPDLSDVQVI---------VKTSYPGQT 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTSAMLSVPGATTVRGFSFFGDSYVYVIFDDDTDPYWARTRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L    K  L    T      + +    +       E           ++       +
Sbjct: 118 SPSLPSQAKPQLGPDATGVGWVYIYT-LKDESGQHDLSELRSLQDWYLKFELQTVPGISE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP++LR      + +       N      +  +            
Sbjct: 177 VAAIGGMVKQYQVVVDPNKLRAYNIPLSLIQTAIQAGNQEVGASVVEMAEAEYLVSTNGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   ++                    + + F++ G         D    P        +
Sbjct: 237 LQSIDDL------------------ARIPLGFNDNGVPVLLRDIADIHLGPQMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +   TI+        L+ G       +           +    
Sbjct: 279 NGEGEVVGGIAVMRFGDNAQKTIDAFKQKLEALKQGLPEGVEVVPVYDRSELITSAVDHL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  S+ L +++   ++   G    + S+ GI +
Sbjct: 339 WSKLIEELLIVGLVCAIFLFHVRSSLVAIVSLPLGILVAFIIMYWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG   D  I++ E + +  +     + + +  +    S     +F S +   ++ + +F
Sbjct: 399 AIGAMTDGAIVMIENMHKHMQDTELTDDNRWDIVIKSASEVGPALFFSLLIITVSFLPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AIS+V  +M + IR K +             + 
Sbjct: 459 MLEAQEGRMFAPLAFTKTYAMAASAGLAISVVPVLMGYAIRGKVISEHKNPVNKGLIALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  +R     V ++++ +I     L            +G +         + +   
Sbjct: 519 MPALKTVLRYPKSTVLVALMVTIVGFYPLNDIGSEFMPPLDEGDLMYMPTTYAGISVGKA 578

Query: 595 RSNLESLQ 602
           R  L+   
Sbjct: 579 REVLQQTD 586



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/220 (20%), Positives = 89/220 (40%), Gaps = 5/220 (2%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +           A  + LE +K+ + E V +  + +   +       L  K I  
Sbjct: 286 GGIAVMRFGDNAQKTIDAFKQKLEALKQGLPEGVEVVPVYDRSELITSAVDHLWSKLIEE 345

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++I  +   I++   F    +L AI +L L I          GI  N+ ++  +   IG 
Sbjct: 346 LLIVGLVCAIFL---FHVRSSLVAIVSLPLGILVAFIIMYWQGINANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  +V+ + M K+M+    +   R D++ KS +E      ++ +   +S LP+ +   
Sbjct: 403 MTDGAIVMIENMHKHMQDTELTDDNRWDIVIKSASEVGPALFFSLLIITVSFLPVFMLEA 462

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                FA P+AF    A ++S  +A  ++  +  +  +  
Sbjct: 463 QEGRMFA-PLAFTKTYAMAASAGLAISVVPVLMGYAIRGK 501



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 93/292 (31%), Gaps = 22/292 (7%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I + +        +    + +   + + + L+ V           I  +N     
Sbjct: 756  LARYPINIRYPEAYRDSPEQISLLPIVTSSGQHITLADVARVYIDDGPAAIKSENARLNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               + ++        +     +  K         T         +   +L    ++ + +
Sbjct: 816  WIFIDIEDIDVSHYVENGQALLKDKLDLPPGYSVTWAGQYEYIERAKDKL--NYVIPLTL 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV--AAVLTLIGYS 733
            + I +L+Y+  +    FA  AI    L +    G + ++  +FNL+       + L G +
Sbjct: 874  AIIVLLLYLNFK---RFAEVAIILGTLPLAMIGGVWLVYLADFNLSVAVGVGFIALAGVA 930

Query: 734  VNDKVVVY-----------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
            V   V++            D  +K      +  + R+ + +     +   + T     I 
Sbjct: 931  VEIGVIMLVYLNQAYQGLTDSAQKE-GERISIEALRESVMQGAGLRVRPVMMTVATVIIG 989

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +LP+      G  V+   A PM  G+  A   S+ I   +         KN 
Sbjct: 990  LLPVMYGSGTGSEVMSRIAAPMVGGMASALILSLLIVPAVYFLWRQHSLKNQ 1041


>gi|171910843|ref|ZP_02926313.1| multidrug efflux pump, AcrB/AcrD/AcrF family protein
           [Verrucomicrobium spinosum DSM 4136]
          Length = 1087

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/506 (11%), Positives = 139/506 (27%), Gaps = 43/506 (8%)

Query: 24  PNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYS-----DELR 78
           P  L ++  D FPS                  ++ +          ++          L 
Sbjct: 26  PVILLRTPTDIFPSINIPV-----------ISIIWQ--YAGLSPQEVEQRILYIHERSLS 72

Query: 79  SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTT 138
           + +        +       I +        +    ++T   Q +  ++       L++  
Sbjct: 73  ATVNDIEHIESNSYNGVGIIKVFLRPGASVDAGVAQLTAVAQTILRQMPPGQTPPLVIRY 132

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
               + I+      +++     E       Q    +   +              +  + D
Sbjct: 133 NASTVPILQYAFTSNKMSEQ--EIYDTAQNQVRVALASVQGAQIPWPYGGKTRVVSVDLD 190

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
            + L+    T   +       N         ++    + G         E+         
Sbjct: 191 LTALKSKNLTARDVVNAMDAQNLILPAGTAKIKETEYNVGVNSSPRVLDEL--------- 241

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQ 318
                       ++    +     +      +        +                   
Sbjct: 242 -----------NNLPVKTVNGATIYVRDVAQVRDGYQPQQNVVRKDGVRGVLLTIMKSGM 290

Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378
            S    +++       L AG                   + +       I A L  +++ 
Sbjct: 291 ASTLQVVDSVKGELPRLLAGLPDDLKVEEFADQSLFVRAAVNGVVHEGIIAAALTALMIL 350

Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           + +   +  ++   SI L+V+ ++A+LS LG T+ L ++ G+ L +G+ VD   +  E +
Sbjct: 351 LFLGSWRSTVIIAVSIPLSVLASIAILSALGETINLMTLGGLALAVGILVDDATVEIENV 410

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLS 495
                  +    ++  G        F S +   I  V +FF  G         A  +  +
Sbjct: 411 HRHMSMGKPFVQAILDGSKEIALPAFVSTLCICIVFVPMFFLTGVARYLFVPLAEAVVFA 470

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMK 521
           ++ S F + ++V  ++ +  +     
Sbjct: 471 MMASYFISRTLVPTLIAWFYKNVPHH 496



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 77/193 (39%), Gaps = 7/193 (3%)

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           +   + + + +    +  +        ++ +GI+   ++A+ +L+++     W   +   
Sbjct: 307 LLAGLPDDLKVEEFADQSLFVRAAVNGVVHEGIIAAALTALMILLFLG---SWRSTVIIA 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ L +  ++   +  G   NL  +  +   +G  V+D  V  + +    +  +    F
Sbjct: 364 VSIPLSVLASIAILSALGETINLMTLGGLALAVGILVDDATVEIENVH---RHMSMGKPF 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
              I     E    +  +++   I  +PM    G     F +P+A  +V A  +S FI+ 
Sbjct: 421 VQAILDGSKEIALPAFVSTLCICIVFVPMFFLTGVARYLF-VPLAEAVVFAMMASYFISR 479

Query: 818 PILLFIYDWRAKN 830
            ++  +  W  KN
Sbjct: 480 TLVPTLIAWFYKN 492



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +G+I++   + + + + F  W      IT L+  I   +    L     N+ A+   +  
Sbjct: 904  LGMIMAIALIYMLLVVNFQSWVDPFIIITALVGAIAGVVWGLFLTQTTLNVPALMGAIMS 963

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + V++    R N+       +       + +  +   + T++A  I ++PM++ 
Sbjct: 964  LGVATANSVLIVSFARDNVLQ---GATPLQAAFNAGSTRIRAVLMTALAMVIGMVPMSLG 1020

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               GG      A  +  G+ +A  +++F    +   ++ 
Sbjct: 1021 VGEGGEQNAPLARAVIGGLTLATLATLFFVPAVFSLLHR 1059


>gi|256818994|ref|YP_003140273.1| heavy metal efflux pump, CzcA family [Capnocytophaga ochracea DSM
           7271]
 gi|256580577|gb|ACU91712.1| heavy metal efflux pump, CzcA family [Capnocytophaga ochracea DSM
           7271]
          Length = 1443

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 77/682 (11%), Positives = 187/682 (27%), Gaps = 54/682 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  ++  +  M+   G+  A      +  +D  P                   + +   
Sbjct: 11  KNKLFVGFMTLMLIFWGVWSA-----TRLPIDAVPDITNN-------------QVQIITS 52

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +  ++       ++  + +          R   + IT  F++          V  
Sbjct: 53  TPTLASQEVEQLVTFPIEQAIANIPGLEETRSISRFGLSVITAVFSEDMDIYFARQLVNE 112

Query: 118 FLQGVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            L+    ++           + T   +    ++      +    A +           Q+
Sbjct: 113 KLKEAQEQIPQGIGSPELSPVSTGLGEVYQYIIRPTEQSKNKYSAKDLRTMQDWIVARQL 172

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             ++   +       L Q     DP RLR +  + + +       N +  G     R   
Sbjct: 173 YGTKGIAEINSFGGELKQYEVVIDPDRLRAMGVSVSDIFTALEQNNQNTGGAYIDKRPNA 232

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                  +     +I  I +   T     K    V   S    GA  +        G  +
Sbjct: 233 YFIRGIGMARSLEDIGNIAVGKHTPPLFIKHVAEVRLGSAIRYGALSYNGEVDAVGGVVM 292

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +  +                    + +  +         ++       +          
Sbjct: 293 MLKGE--------------------NSHEVVSRIKEKLPTIQQSLPEDVVIEPFLDRTDL 332

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +    +      A +V+ +L + +   + GL+   +I L+++  L +++L G +  L
Sbjct: 333 VQRAIHTVEKNLLEGALIVIFILVLFLGNLRAGLIVATAIPLSLLFALGMMNLFGVSANL 392

Query: 415 PSIAGI--VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN----- 467
            S+  I   + +  +V     V   +       +     +D     + S I  S      
Sbjct: 393 MSLGAIDFGIIVDGSVIVVEAVMHHLAIRKNHQRLTQAQMDEEVFHSASKIRSSAAFGEI 452

Query: 468 --ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             +   I  + L    G   R  A T+  +IL ++  +++ + AM   ++          
Sbjct: 453 IILMVYIPILTLVGVEGKMFRPMAQTVVFAILGALILSLTYIPAMSALLLPKTVSDKRSF 512

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                 +L      +     R  G  I     +  + +     +      +      V  
Sbjct: 513 AERMISWLYRHYQPLFVRSIRLRGWIIGSTVVLFVLAVGIFSRMGGEFIPQLQEGDFVFE 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                 + ++ +LE+        + FD  K  + +       +         +   +   
Sbjct: 573 CILPPGTSLKQSLETSMQASRLIREFDEVKMVIGKTGSAEIPTDPMPLEASDIVIVLKSQ 632

Query: 646 VPLSTIQNTEIVGPKISRELIR 667
               + ++ E +G  I   L  
Sbjct: 633 DQWKSGRSYEELGDAIIERLKD 654



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 63/170 (37%), Gaps = 14/170 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + I + I +         L   T + L +   LG   LFG+  NL ++ A+    G 
Sbjct: 345 LEGALIVIFILVLFLGNLRAGLIVATAIPLSLLFALGMMNLFGVSANLMSLGAI--DFGI 402

Query: 733 SVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKS----INETLGRSVYTSMAAFIS 782
            V+  V+V +       +RKN +  T +    ++   +     +   G  +   +  +I 
Sbjct: 403 IVDGSVIVVEAVMHHLAIRKNHQRLTQAQMDEEVFHSASKIRSSAAFGEIII--LMVYIP 460

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +L +    G +    A  + F I+ A   S+     +   +      + R
Sbjct: 461 ILTLVGVEGKMFRPMAQTVVFAILGALILSLTYIPAMSALLLPKTVSDKR 510



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 706  KTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               G FAL   G+ F+++A    + L G +V + +V+      N        +    +  
Sbjct: 906  AIGGVFALLLRGMPFSISAGIGFIALFGVAVLNGIVLIGTF--NQLKKEGMTNLLHRVIT 963

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                 L   + T+M A +  LPMA+    G  V    A  +  G+V A   ++F+   + 
Sbjct: 964  GTEMRLRPVLMTAMVASLGFLPMALSQGAGAEVQRPLATVVIGGLVSATFLTLFVLPLLY 1023

Query: 821  LFI---YDWRAKNARI 833
            +     + WR  +A++
Sbjct: 1024 IAFNSTFSWRRPSAKV 1039


>gi|300871145|ref|YP_003786017.1| preprotein translocase subunit SecD [Brachyspira pilosicoli
           95/1000]
 gi|300688845|gb|ADK31516.1| preprotein translocase subunit SecD [Brachyspira pilosicoli
           95/1000]
          Length = 503

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 141/447 (31%), Positives = 244/447 (54%), Gaps = 27/447 (6%)

Query: 107 FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID-QVISHAIEQSME 165
            +     ++      +   L    +  L     +    +  +  ++  +  + A+E+ + 
Sbjct: 57  DEIQSLKRLRSESVNLGLDLQGGIRIVLQADFEDYANKLDRTALSLTAEEKNDAMERLIS 116

Query: 166 IIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
            +R RIDQ G+SE  I++ G  R++++LPG +DP R++ ++ +   ++F+ V    S   
Sbjct: 117 RLRGRIDQFGVSEVGIRKQGDDRVVVELPGARDPDRIKSVVLSQGALTFNLVDQEASATI 176

Query: 226 FMFGVRFLRDSD-------------------------GNQYLVEDKVEISGIHLNGATAN 260
               +     ++                         G    +E +  + G  L  A   
Sbjct: 177 TSNDLLLGVFTNTAKVPENDKQVYFYSEKDDFGRRVRGAPVFIEKEASLDGSALINANVG 236

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
                 +  V+   +  GA +F  VT  N+ + LA+VLD +V++AP INQ I  G+  IS
Sbjct: 237 GGQFG-EVTVEFELNNEGAEQFALVTAANVNRMLAIVLDDKVISAPNINQEIRGGRGVIS 295

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
           G+FT+E A  LA +L+ G+LP+K+++VEE  VG  +G+DS+  GT A+    +L+ +FMI
Sbjct: 296 GSFTLEEAQDLARILKEGALPLKVSVVEEEVVGQSIGADSVKAGTTALFMAAILVAVFMI 355

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
            +Y   G+++  ++ +NVIL +A+LS L  TLTLP IAG++L IG+AVD+N+++ ERI++
Sbjct: 356 AVYRVSGVLSTIAMLINVILIIAILSPLRFTLTLPGIAGLILTIGMAVDANVIIFERIKD 415

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISM 500
           E +   ++  ++  G+ RA++TIFDSNIT +I  ++L+ FG G V+GFA+T+   ILI++
Sbjct: 416 ELKIKSNISDAIISGYDRAFATIFDSNITTIIVALILWIFGSGPVQGFAVTLFFGILINL 475

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINP 527
           FTA+ I R +   IIR K +K      
Sbjct: 476 FTAVFITRYIYEEIIRTKLVKKAGFFF 502



 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 94/230 (40%), Gaps = 4/230 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +   + + ++ + D      +  +          G    +         K   +    +
Sbjct: 261 TAANVNRMLAIVLDDKVISAPNINQEIRGGRGVISGSFTLEEAQDLARILKEGALPLKVS 320

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           +   E+VG  I  + ++ G   + ++AI + +++   ++    + +   +++++   +  
Sbjct: 321 VVEEEVVGQSIGADSVKAGTTALFMAAILVAVFMIAVYRVS-GVLSTIAMLINVILIIAI 379

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +       L  +A ++  IG +V+  V++++R++  +K+     +  D I    +    
Sbjct: 380 LSPLRFTLTLPGIAGLILTIGMAVDANVIIFERIKDELKI---KSNISDAIISGYDRAFA 436

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
               +++   I  L + ++G   +  FA+ + FGI++   +++FI   I 
Sbjct: 437 TIFDSNITTIIVALILWIFGSGPVQGFAVTLFFGILINLFTAVFITRYIY 486



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 51/134 (38%), Gaps = 18/134 (13%)

Query: 23  LPNFLPQSMLDRFPSA--MPKNRISLGLDLRGGSHLVLEVDEDDFVNGF----------- 69
           + N   +  +D   S   +    ++LGLDL+GG  +VL+ D +D+ N             
Sbjct: 47  ISNGYTKEQIDEIQSLKRLRSESVNLGLDLQGGIRIVLQADFEDYANKLDRTALSLTAEE 106

Query: 70  ----LQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
               ++     LR  + + G+    +R+   +++ +    +R  + I   V        +
Sbjct: 107 KNDAMERLISRLRGRIDQFGVSEVGIRKQGDDRVVVELPGARDPDRIKSVVLSQGALTFN 166

Query: 125 KLNVDPKKNLLVTT 138
            ++ +    +    
Sbjct: 167 LVDQEASATITSND 180


>gi|198276499|ref|ZP_03209030.1| hypothetical protein BACPLE_02694 [Bacteroides plebeius DSM 17135]
 gi|198270587|gb|EDY94857.1| hypothetical protein BACPLE_02694 [Bacteroides plebeius DSM 17135]
          Length = 635

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 76/669 (11%), Positives = 182/669 (27%), Gaps = 52/669 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M        +  ++      I          +   P                   + ++V
Sbjct: 1   MVRFLIKRPIAVLMAFTACFIVGLVTYFSLPVSLLPDIDIP-------------QITVQV 47

Query: 61  DEDDFVNGFLQMY-SDELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
             ++     L+      LR     +          R     I LSF      +    +V 
Sbjct: 48  SGENSSARELENTMVAPLRRQLMQVSGLSEMRSETRDGSGIIRLSFGFGTDTDLAFIEVN 107

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-------SHAIEQSMEIIRQ 169
             +    + L  D  +   V  +  +I +      + + +          +E        
Sbjct: 108 EKIDAAMNSLPRDAARPKAVKASATDIPVFYLNMTLKKDVPYRETDGDAFLEMCTLAENV 167

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
              +I           +      L    D  R+  L    A +       N      +  
Sbjct: 168 VKRRIEQLPQVAMADMTGVPQKMLRIVPDMGRMESLGMGIADLEAILSSNNVEPGSMLVR 227

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
             +   +     ++    +                     V   +     +        +
Sbjct: 228 DGYYEYNIRIASILRTPED---------------------VRQIWFNRNGQVRQLGDICD 266

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +           +             + + + +                   I+   +  
Sbjct: 267 VQTVTRNETGRSLAGGKRAVTLAIIKQGEENMDNLRRELKETTDYFSRIYPDIEF-SISR 325

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   + S  +    +    + IV    +   +  LV   ++  +V++T     L  
Sbjct: 326 NQTELLDYTISNLQQNFTLGFLFIFIVAVFFIGDVRSPLVIGITMIASVVITFFFFYLCR 385

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            +L + S++G++L +G+ +D+ I+V E + +   K  S+ C+   G S   + +  S++T
Sbjct: 386 VSLNVISLSGLILAVGMMIDNAIIVTENVSQYREKGYSLKCAAVAGTSEMITPMLSSSLT 445

Query: 470 ALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +   V L F     G      A ++   +++S FT I ++  + +   R    K     
Sbjct: 446 TIAVFVPLVFMSGIAGAIFMDEAFSITSGLMVSYFTGIMLLPVLYVLFYRTGIRKHNWFT 505

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              +  L  + +   +     W      +    +I  L    L + +  K  +   +  N
Sbjct: 506 ANFKNLLKNEWLTRFYDAGIEWVFAHKTVTMFLAIVSLPLCVLMFMVIDKERMP-EIDQN 564

Query: 587 RPVDLSVVRSNL--ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             V       N+  +       + Q     ++   R  ++  D   +++       K   
Sbjct: 565 EVVVGIEWNENIHVDENNRRVYNPQIQISAESETKRSIFREKDKTKRSKKESAQHSKSRN 624

Query: 645 IVPLSTIQN 653
              + T  +
Sbjct: 625 KSFVMTSVS 633



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/285 (10%), Positives = 91/285 (31%), Gaps = 7/285 (2%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V    +              +     +   Q+    N  V       +++++   +    
Sbjct: 219 VEPGSMLVRDGYYEYNIRIASILRTPEDVRQIWFNRNGQVRQLGDICDVQTVTRNETGRS 278

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G++   + +  Q  +++   R            +      +      ++    I   
Sbjct: 279 LAGGKRAVTLAIIKQGEENMDNLRRELKETTDYFSRIYPDIEFSISRNQTELLDYTISNL 338

Query: 670 IVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
                +  + + I  ++        L    T+I  +  T  FF L  +  N+ +++ ++ 
Sbjct: 339 QQNFTLGFLFIFIVAVFFIGDVRSPLVIGITMIASVVITFFFFYLCRVSLNVISLSGLIL 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  +++ ++V + +    +      S +       +E +   + +S+      +P+  
Sbjct: 399 AVGMMIDNAIIVTENV---SQYREKGYSLKCAAVAGTSEMITPMLSSSLTTIAVFVPLVF 455

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G     F   A  +  G++V+  + I +   + +  Y    + 
Sbjct: 456 MSGIAGAIFMDEAFSITSGLMVSYFTGIMLLPVLYVLFYRTGIRK 500


>gi|50084350|ref|YP_045860.1| putative multidrug transporter [Acinetobacter sp. ADP1]
 gi|49530326|emb|CAG68038.1| putative multidrug transporter [Acinetobacter sp. ADP1]
          Length = 1035

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/549 (10%), Positives = 156/549 (28%), Gaps = 38/549 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   +  +G+L        +  +   P       +             L    
Sbjct: 10  RPVANILLGIAMTLLGILA-----FFRLPVAALPQVDIPTIV---------VRANLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + ++  +    +     +        S  Q   ++ L F         A +V   +   
Sbjct: 56  PESMSATVATPLERAMMGVSGIKAINSSSSQNSTQVILHFDLDTDINEAAREVQAAINVA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L                 S +     +      A +       Q    +  +    +
Sbjct: 116 MSQLPSGMPSPPEYFKVNPSQSPIFY-LALSSRYLSAGKLYELASNQLKPNLAQTSGVGE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  +  +    +P+ L     +  ++       N  +   +   +  R        
Sbjct: 175 VEIDGASMPAVRIILNPNALISQGISLEQVRDAVKKSNVVQSLGVIEHQNNRWQVALSTH 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++D  + S                    ++   +             +   +        
Sbjct: 235 IKDAADFS--------------------NLIVHQTAQGIVRLKDVAEVEDSVENRYVAGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      S +   +   TIE        L +                         
Sbjct: 275 HNGEPAVMIKISRQPNANTIATIEKIKAKLPELNSMIPADAKLTTVMDGSEVIHTGLQEA 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      LV++V+ +++   +  +V   ++ + ++  ++L+ L G +    SI  +++
Sbjct: 335 RETLLFSIFLVVVVVVLMLGRLRSAIVPSIAMLVTLVGAISLIYLAGFSFNNLSIMAVIV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IGL VD  I+V E I     + +  F +   G      T+   N+  +I  + + F GG
Sbjct: 395 AIGLVVDDAIVVLENIERHIEQGEHPFSAAIQGVREVGFTLVAMNLALIIIFISVLFMGG 454

Query: 483 ---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                 R F++T+   +++S+F ++ +  ++    ++   +++          ++     
Sbjct: 455 VIERLFREFSLTLVFIVVVSVFVSLILTPSLSARCLQSINVQNRQPLYDYSQRMMHGLTR 514

Query: 540 IQFMRARFW 548
                 ++ 
Sbjct: 515 HYIHSLQWI 523



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 84/221 (38%), Gaps = 7/221 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A   V L  V    +S++   ++  +       +   +    +++A    ++    ++ 
Sbjct: 249 TAQGIVRLKDVAEVEDSVENRYVAGFHNGEPAVMIKISRQPNANTIATIEKIKAKLPELN 308

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
            ++P      T + G ++    +++    ++ S   +++ + +   +   A+     +++
Sbjct: 309 SMIPADAKLTTVMDGSEVIHTGLQEARETLLFSIFLVVVVVVLMLGRLRSAIVPSIAMLV 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   +    L G  FN  ++ AV+  IG  V+D +VV + +    +             
Sbjct: 369 TLVGAISLIYLAGFSFNNLSIMAVIVAIGLVVDDAIVVLENI---ERHIEQGEHPFSAAI 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
           + + E     V  ++A  I  + +   GG +      F++ 
Sbjct: 426 QGVREVGFTLVAMNLALIIIFISVLFMGGVIERLFREFSLT 466



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 76/213 (35%), Gaps = 7/213 (3%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
             Q   +      +  V  ++     +    + ++    +   L    ++  +I+ I +++
Sbjct: 815  KQGYTAEQAEYAIRSVLPQVMLPNQIFVATDKDVEAESLQAGLSTPMLLVTVIALIYIVL 874

Query: 683  YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
             I         L  ++T+       L    LF  EF L A+  +  LIG  V + +++ D
Sbjct: 875  GIT-YESMVHPLTILSTIPAIALGGLLTLWLFNFEFTLIALLGMFLLIGIVVKNAILLID 933

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
                 ++      +  + +  +        + T+ AA +  +P+A+    G  +     +
Sbjct: 934  F---TLQQRRLGKTALESVVSAATLRFRPILMTNTAALLGAIPLALSTTEGSELRQPLGL 990

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             +  G+ +    +++    + L +        +
Sbjct: 991  VIVGGLALGQLLTLYTTPVMYLVLEKLAQIFKK 1023


>gi|315223376|ref|ZP_07865235.1| cation efflux system protein CzcA [Capnocytophaga ochracea F0287]
 gi|314946707|gb|EFS98696.1| cation efflux system protein CzcA [Capnocytophaga ochracea F0287]
          Length = 1443

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 77/682 (11%), Positives = 187/682 (27%), Gaps = 54/682 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  ++  +  M+   G+  A      +  +D  P                   + +   
Sbjct: 11  KNKLFVGFMTLMLIFWGVWSA-----TRLPIDAVPDITNN-------------QVQIITS 52

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +  ++       ++  + +          R   + IT  F++          V  
Sbjct: 53  TPTLASQEVEQLVTFPIEQAIANIPGLEETRSISRFGLSVITAVFSEDMDIYFARQLVNE 112

Query: 118 FLQGVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            L+    ++           + T   +    ++      +    A +           Q+
Sbjct: 113 KLKEAQEQIPQGIGSPELSPVSTGLGEVYQYIIRPTEQSKNKYSAKDLRTMQDWIVARQL 172

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             ++   +       L Q     DP RLR +  + + +       N +  G     R   
Sbjct: 173 YGTKGIAEINSFGGELKQYEVVIDPDRLRAMGVSVSDIFTALEQNNQNTGGAYIDKRPNA 232

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                  +     +I  I +   T     K    V   S    GA  +        G  +
Sbjct: 233 YFIRGIGMARSLEDIGNIAVGKHTPPLFIKHVAEVRLGSALRYGALTYNGEVDAVGGVVM 292

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +  +                    + +  +         ++       +          
Sbjct: 293 MLKGE--------------------NSHEVVSRIKEKLPTIQQSLPEDVVIEPFLDRTDL 332

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +    +      A +V+ +L + +   + GL+   +I L+++  L +++L G +  L
Sbjct: 333 VQRAIHTVEKNLLEGALIVIFILVLFLGNLRAGLIVATAIPLSLLFALGMMNLFGVSANL 392

Query: 415 PSIAGI--VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN----- 467
            S+  I   + +  +V     V   +       +     +D     + S I  S      
Sbjct: 393 MSLGAIDFGIIVDGSVIVVEAVMHHLAIRKNHQRLTQAQMDEEVFHSASKIRSSAAFGEI 452

Query: 468 --ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             +   I  + L    G   R  A T+  +IL ++  +++ + AM   ++          
Sbjct: 453 IILMVYIPILTLVGVEGKMFRPMAQTVVFAILGALILSLTYIPAMSALLLPKTVSDKRSF 512

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                 +L      +     R  G  I     +  + +     +      +      V  
Sbjct: 513 AERMISWLYRHYQPLFVRSIRLRGWIIGSTVVLFVLAVGIFSRMGGEFIPQLQEGDFVFE 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                 + ++ +LE+        + FD  K  + +       +         +   +   
Sbjct: 573 CILPPGTSLKQSLETSMQASRLIREFDEVKMVIGKTGSAEIPTDPMPLEASDIVIVLKSQ 632

Query: 646 VPLSTIQNTEIVGPKISRELIR 667
               + ++ E +G  I   L  
Sbjct: 633 DQWKSGRSYEELGDAIIERLKD 654



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 88/258 (34%), Gaps = 17/258 (6%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             + V    + S L    +      +  G    +++ +            L  +++ + E
Sbjct: 260 FIKHVAEVRLGSALRYGALTYNGEVDAVGGVVMMLKGENSHEVVSRIKEKLPTIQQSLPE 319

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
            V +    +   +  +    + +  +     + I + I +         L   T + L +
Sbjct: 320 DVVIEPFLDRTDLVQRAIHTVEKNLLE---GALIVIFILVLFLGNLRAGLIVATAIPLSL 376

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFR 758
              LG   LFG+  NL ++ A+    G  V+  V+V +       +RKN +  T +    
Sbjct: 377 LFALGMMNLFGVSANLMSLGAI--DFGIIVDGSVIVVEAVMHHLAIRKNHQRLTQAQMDE 434

Query: 759 DLIDKS----INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
           ++   +     +   G  +   +  +I +L +    G +    A  + F I+ A   S+ 
Sbjct: 435 EVFHSASKIRSSAAFGEIII--LMVYIPILTLVGVEGKMFRPMAQTVVFAILGALILSLT 492

Query: 815 IAAPILLFIYDWRAKNAR 832
               +   +      + R
Sbjct: 493 YIPAMSALLLPKTVSDKR 510



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 92/270 (34%), Gaps = 12/270 (4%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
             +   G   +  +     +  V  S L +++      Q         + + +       Q
Sbjct: 774  SLHRTGIDDVQHMMVATENGQVPMSQLATIKYELGPAQVSREAGKRRIVIGFNVQGRDVQ 833

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            + V ++ +K     +P             + +   R  I   +   +   +         
Sbjct: 834  SVVSDIEQKLKGVKLPTGYYFTYGGQFENLQQATDRLLIAVPVALLLIFFLLYLAFHSIK 893

Query: 692  FALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             +L   + + +      G FAL   G+ F+++A    + L G +V + +V+      N  
Sbjct: 894  QSLLIFSAIPMS--AIGGVFALLLRGMPFSISAGIGFIALFGVAVLNGIVLIGTF--NQL 949

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                  +    +       L   + T+M A +  LPMA+    G  V    A  +  G+V
Sbjct: 950  KKEGMTNLLHRVITGAEMRLRPVLMTAMVASLGFLPMALSQGAGAEVQRPLATVVIGGLV 1009

Query: 807  VAASSSIFIAAPILLFI---YDWRAKNARI 833
             A   ++F+   + +     + WR  +A++
Sbjct: 1010 SATFLTLFVLPLLYIAFNSTFSWRRPSAKV 1039


>gi|302877943|ref|YP_003846507.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
 gi|302879911|ref|YP_003848475.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
 gi|302580732|gb|ADL54743.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
 gi|302582700|gb|ADL56711.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
          Length = 1036

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 71/562 (12%), Positives = 160/562 (28%), Gaps = 43/562 (7%)

Query: 3   NNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            N ++VIL    +   G+   L     ++ LD  P       I          +      
Sbjct: 11  RNRFMVILATLFVTLAGIYAVL-----KTPLDALPDLSDVQVI---------VYTEYSGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLAVPKSKVVRGFSFFGASFVYVIFEDGTDIYWARSRVLEYLNS 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  +    L    T        +  +      +  +           Q+  +    
Sbjct: 117 IAGRLPKNVAPQLGPDATGVGWVYQYAVLS---EKHNLAQLRTMQDWYLRYQLTKAHGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP +LR      +K+S      N    G +  +         + 
Sbjct: 174 EVASIGGFVQQYQVTVDPIKLRAYGIPLSKVSQIIRDSNRDVGGRVVEMAETEYMVRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K +I                      +   E G              P        
Sbjct: 234 YLRGKSDIE-------------------NLVVKAERGTPVLLRDIARVELGPDERRGLTE 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    I       A +  G       +           +   
Sbjct: 275 LNGEGEVVSGIVMARYGQNALEVIHNIKEKIAEIAPGLPEGVKIVSVYDRSDLIHRAIET 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            KGT    + +V +V  + +++ +  LVA   + + V+++   + +LG    + S+ GI 
Sbjct: 335 LKGTLLEESLIVALVCMVFLMHARSALVAIVMLPVGVLISFIAMRVLGLNSNIMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREENRK---NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + IG  VD+ I++ E   +   +    +S   ++          +F S +   ++ + +F
Sbjct: 395 IAIGAMVDAAIVMIENAHKHLERVKEGESRTEAMIAACKEVGPALFFSLLIITVSFLPVF 454

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   S+  +   ++++V  +M+  IR                   
Sbjct: 455 TLESQEGRMFSPLAFTKTFSMAGAALLSLTLVPVLMLLFIRGNIKPEAQNPLNRWLITGY 514

Query: 536 DCIAIQFMRARFWGVGISILFS 557
             +    ++ +   + ++ L  
Sbjct: 515 RPLIAAVLKHKKMTIVVAALVL 536



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 7/162 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + M+  +  R     AL AI  L + +  +     + G+  N+ ++  +   IG
Sbjct: 343 SLIVALVCMVFLMHAR----SALVAIVMLPVGVLISFIAMRVLGLNSNIMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+  +V+ +   K+++      S  + +  +  E      ++ +   +S LP+     
Sbjct: 399 AMVDAAIVMIENAHKHLERVKEGESRTEAMIAACKEVGPALFFSLLIITVSFLPVFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                F   A    F +  AA  S+ +   ++L       K 
Sbjct: 459 QEGRMFSPLAFTKTFSMAGAALLSLTLVPVLMLLFIRGNIKP 500


>gi|188590039|ref|YP_001919755.1| putative multidrug efflux pump, membrane protein [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188500320|gb|ACD53456.1| putative multidrug efflux pump, membrane protein [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 1067

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/654 (9%), Positives = 178/654 (27%), Gaps = 46/654 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++++ ++   G +        +   +  P       +                 
Sbjct: 9   KRPLTIIMVFLVVIMFGYI-----GYTKMPANLMPDIEVPVVL---------VTTQWSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +E  S +      V   ++  + +   F        I + V   +  
Sbjct: 55  GPEDIDEQISEKIEEKLSAVSNVKKTVSMSQESVSMVVAQFEYGTDLNEILNDVRSKVDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D  K+ ++       +I     +        ++           ++       
Sbjct: 115 VQSTLPDDVTKSTVLKMDMNAQAISQLVISGGHSSEALMK---YAEDTIQPKVESVGGVT 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     Q+    DP+ L     +   +                             
Sbjct: 172 EAGINGGNKSQVNITVDPAILSNYGVSIQTIQNVLSA--------------------TNK 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G          +  + + V  +     G +        ++           
Sbjct: 212 TFPYGSITQGEDKIVLRGIDELNSLEDVKQVQIPVSGGKTVRLDKICDVEYGFVEKQAIY 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++        L + +   K+ +    +      S   
Sbjct: 272 RYNGKNSLVIDIQKQQDANTVQVMKDVHKTVEKLNSENPEYKIEV-VNDSSEYINDSIKS 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                AI A +  +V+F+ +   +  LV   +I  ++I  +ALL   G TL + ++  +V
Sbjct: 331 VMQNLAISAIISFLVIFLFLKSMRASLVVAIAIPTSIIGAIALLYFTGETLNMVTLGSLV 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + +G+ VD+  ++ E I +  R     +      G     + I  S +T +   + + F 
Sbjct: 391 IAVGMVVDNATVIIENIFQYRRDTTLDIDDCSIKGAQTVTNAIVASTLTTVAIFLPILFT 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSRFFL 533
            G         A T+  ++ +S+  A+++V ++   + +    K +              
Sbjct: 451 DGFTKIMFGALAKTLIYALSLSLIVAVTLVPSIFAKLSKGTNAKKLVEKPSPVFDKFNDK 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + + +     +   +   +LF                   +G + + +     ++L+ 
Sbjct: 511 YKNILKVALNHKKVVVLISILLFVASIFGATLIGMDFMASTDEGKLSVSISLPEGLELNA 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +   +               L        ++      L    ++      
Sbjct: 571 SDYYVSMAENKISDIPEIKTIMTTLASSSRSGSNNANIAIELVPENERKKSTND 624



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 90/252 (35%), Gaps = 6/252 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         V       + + D        + ++ + +     +    T   + +   
Sbjct: 760  QIKIVSQSGQEVPVVAFADITMEDSLKSISKSDGDYTITISATVDNLDTSTASKQAM-NA 818

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
            I E+        +     ++  E +   I  ++++ I + + +  +F+ +      +  +
Sbjct: 819  INELDMPRDYGISFGGATEMMNESMGGLIFAMVVAIILVYMVMVAQFESFSKPFIIMFCI 878

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   +    +     N+  +   + L+G  VN+ +V+ D + + ++    + +  ++
Sbjct: 879  PFAFVGVVIALVITRANLNVIGMLGSILLVGIVVNNGIVLIDYI-EQLRKAKPNENLIEI 937

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +    +  L   + T+M   + ++P A+    GG  +   A+ +  G+ V+   ++ +  
Sbjct: 938  VSIGSSTRLRPVLMTTMTTVVGMIPTALSFGSGGETMQPLAVVIIGGLSVSTVVTLILIP 997

Query: 818  PILLFIYDWRAK 829
             I +       K
Sbjct: 998  TIYMIFDKVEKK 1009



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 90/255 (35%), Gaps = 9/255 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            +Q+ V   + V L  +             ++        +   + Q  ++V   + +  
Sbjct: 241 QVQIPVSGGKTVRLDKICDVEYGFVEKQAIYRYNGKNSLVIDIQKQQDANTVQVMKDVHK 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELI---RKGIVGVIISAIAMLIYIWIRFKWYFAL 694
             +K+    P   I+        I+  +    +   +  IIS + + +++        +L
Sbjct: 301 TVEKLNSENPEYKIEVVNDSSEYINDSIKSVMQNLAISAIISFLVIFLFL---KSMRASL 357

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                +   I   +      G   N+  + +++  +G  V++  V+ + + +  +   T+
Sbjct: 358 VVAIAIPTSIIGAIALLYFTGETLNMVTLGSLVIAVGMVVDNATVIIENIFQYRR--DTT 415

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
           +   D   K         V +++      LP+    G     F   +A  ++ A S S+ 
Sbjct: 416 LDIDDCSIKGAQTVTNAIVASTLTTVAIFLPILFTDGFTKIMFG-ALAKTLIYALSLSLI 474

Query: 815 IAAPILLFIYDWRAK 829
           +A  ++  I+   +K
Sbjct: 475 VAVTLVPSIFAKLSK 489


>gi|37523739|ref|NP_927116.1| cation efflux system protein CzcA-like protein [Gloeobacter
           violaceus PCC 7421]
 gi|35214744|dbj|BAC92111.1| gll4170 [Gloeobacter violaceus PCC 7421]
          Length = 1048

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 75/591 (12%), Positives = 167/591 (28%), Gaps = 57/591 (9%)

Query: 5   PWLVIL-YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            WLV+L    +  +G+  A+     +  LD FP+  P               +VL+    
Sbjct: 13  RWLVVLGAVAVLGLGIATAV-----RLPLDVFPNFAPP-------------QVVLQTVAP 54

Query: 64  DFVNGFLQMYSD-ELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 ++      L S L           S     + +TL F  +         V+  +
Sbjct: 55  GLAPEEVESLVTLPLESALNGTPGLADIRSSSAVGLSTLTLIFEGNTDILRARQLVSERV 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQN-----NIDQVISHAIEQSMEIIRQRIDQI 174
           Q    +L       LL+  +     I+               +  ++ +        +++
Sbjct: 115 QQAVPRLPEGVDAPLLLPASSPVGVILRYALIVDPNAPGPERTDLLQLATLANWPIRNRL 174

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                    L      +Q     DP RL+Q   T  ++S      N +  G         
Sbjct: 175 LAIAGVTNVLAIGGGEMQYQVLVDPDRLKQFGVTLGQVSEAVREANLNAPGGFLLSPDRE 234

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +    ++    +                                   +    
Sbjct: 235 VVIRAIGRIASLADLGESVVAV--------------------RSGVPVRIAEVARVQTGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            V                   +                  +RA            R    
Sbjct: 275 GVKRGDASFNGQAAVIVTVVRQPFADTPTVTRAVEAAMDDIRATLPKDVRVTTTFRQEDF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S             +V +VL + +   +  L+   ++ L++ L L+LL+  G  +  
Sbjct: 335 IDKSVGNVLEALRDGVIIVAVVLVLFLGNWRTMLITLTALPLSIALGLSLLAAFGVGINT 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNI 468
            ++ G+ + +G  +D  I+  E +           + Q     +  G  +   ++  + +
Sbjct: 395 MTLGGLAIALGEVIDDAIIDAENVYRRLRENQARPQPQPPLQVVFAGSVQIRGSVVFATL 454

Query: 469 TALIATVVLFFFGGGAVRGF---AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
              +    LF   G   R F    +    S+L S+  A+++  A+   ++  +++   + 
Sbjct: 455 ILCVVIAPLFTLTGIEGRVFAPLGLAYVFSLLASLLVALTVTPALCYVLLAGRRLPDGET 514

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
             +     +   +    +R     +  S +    S+ +L   G  +  +F+
Sbjct: 515 RLVRWLKRLYRPVLGWSLRHPAPILAGSAVLLALSLAILPFLGTTFLPEFQ 565



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 97/253 (38%), Gaps = 9/253 (3%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G + +     + + L+ V S + S     I+ +N             +   S+       
Sbjct: 779  GELLIDTPTGQKIPLAQVASIVTSTGPNTINRENVSRRIVVAANADGRDLGSLIAEARTN 838

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            + ++                   + +REL+  G + +    +A+L+++ +R      L  
Sbjct: 839  IARQVPLPAGYYIEYGGQFEAQQRATRELLIFGALALGG--VAVLLFLAVR-SVRSTLLI 895

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +  L L +   +    L G   ++ ++   +TL G +  + V++    ++ +       S
Sbjct: 896  LANLPLALIGGIVAVWLGGGVLSVASLVGFITLFGIANRNGVILVTTYQQRLAA---GES 952

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            F + I++   E L   + T++ A ++++P+      G  ++   A+ +  G+  + + ++
Sbjct: 953  FDEAIEEGSIERLSPVLMTALTAALAMVPLMWGEPAGKEILQPLAVVVFGGLFTSTALTL 1012

Query: 814  FIAAPILLFIYDW 826
             +   +     + 
Sbjct: 1013 VVIPALFERFGER 1025



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/227 (16%), Positives = 76/227 (33%), Gaps = 6/227 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G   + V +  PV ++ V        +              +  ++    D+   TR +E
Sbjct: 250 GESVVAVRSGVPVRIAEVARVQTGSGVKRGDASFNGQAAVIVTVVRQPFADTPTVTRAVE 309

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALG 695
                I   +P      T         + +   +  +     I  ++ +     W   L 
Sbjct: 310 AAMDDIRATLPKDVRVTTTFRQEDFIDKSVGNVLEALRDGVIIVAVVLVLFLGNWRTMLI 369

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLY 751
            +T L L I   L   A FG+  N   +  +   +G  ++D ++    VY R+R+N +  
Sbjct: 370 TLTALPLSIALGLSLLAAFGVGINTMTLGGLAIALGEVIDDAIIDAENVYRRLREN-QAR 428

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
                   ++     +  G  V+ ++   + + P+    G     FA
Sbjct: 429 PQPQPPLQVVFAGSVQIRGSVVFATLILCVVIAPLFTLTGIEGRVFA 475


>gi|300772825|ref|ZP_07082695.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761128|gb|EFK57954.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 1050

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 70/668 (10%), Positives = 166/668 (24%), Gaps = 45/668 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +     L+I     L    + RFP   P               +V+ +  
Sbjct: 8   RPVLATVVSIL-----LVILGLVGLKLLPVSRFPEIAPP-------------SVVVSLSY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
               +  + +     +   +        I   +       + + F      +  +  V  
Sbjct: 50  PGANSETVAKSVLLPIEEAINGVEDMTYIKSSASNSGSGSVQVFFKTGTNPDVASVNVQT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID--QVISHAIEQSMEIIRQRIDQIG 175
            +    S +  +  +  +     +   I+      D    +              +  + 
Sbjct: 110 RISKAISSIPAEVNEAGITVMPRQSGVIMTINLYSDHQDSVYDETFLQAYAQINMMRPLL 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +   Q          +    +P +L         +       N       FG      
Sbjct: 170 RVDGVAQVSRVGARDYSMRLWLNPEKLALYTLVPQDVMDAIKDQNFEIAPGKFGETSD-- 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                                       +  +    +          +      I     
Sbjct: 228 --------------EAFETVIRHKGRLTQPEEFENIVIKTNKDGSVLYLKDVARIEFGAT 273

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
            +     +          +  +  + +            +           +        
Sbjct: 274 NLGSDNKVNGHPGLTLNLTQTSGSNAHDIDIAVRKTLEGMAKSFPEGIKYEITYAVRDQI 333

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S +  K T      LV I++F+ +   +  L+   +I ++++ T   L L G +L + 
Sbjct: 334 DESINQVKHTLFEAFILVFIIVFIFLQDFRSTLIPAIAIPVSLVGTFFFLQLFGFSLNVL 393

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IG+ VD  I+V E I ++          +     S     I    +      
Sbjct: 394 TMFALVLAIGIVVDDAIVVVEAIHQKMHATGLKAREATLSTMSEITGAILSITMVMAAVF 453

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F  G      R FA T+  +ILIS   A+++  A+   ++++  +++      S+F
Sbjct: 454 LPVGFMEGPAGIFYRQFAYTLATAILISALNALTLSPALCALLLKHSAVETGIKEGDSKF 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                     F  +        I      I       +   +    G+ L V A +    
Sbjct: 514 TKYKKRFFHAFNTSFDRLTDRYISGVKKLIKHKPLTWVGLILITAAGVFLMVHAPKSFIP 573

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +   S +                +               +          +      +  
Sbjct: 574 TEDDSFITYSLAMPPGASLTRTTEVLRQADSILKNREDIKGMTTVSGFNVLDGSSSPAFA 633

Query: 652 QNTEIVGP 659
                + P
Sbjct: 634 AGYINMLP 641



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 93/304 (30%), Gaps = 17/304 (5%)

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               I+   AR      S       + +          +    I +       V +S + +
Sbjct: 753  MTTIRAYFARVQAGDFSRFGRQYRVYVQADMDYRKDPESFNSIFVRNKNGEMVPVSTILT 812

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              + +    I+  N     +             A   + ++   K+           +  
Sbjct: 813  LEKVVGPETITRYNLYNAISVNATPSKGYSTGDAMKAIQKLADDKLPVNYGFEWTGMSFE 872

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFAL 713
                 S+ +       +I +   + +Y  +      +      + ++ + +    G   +
Sbjct: 873  ESQSGSQTI-------LIFALSILFVYFLLSAQYESYILPWAVLLSVPVGLVGVYGTILM 925

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+E N+     ++ LIG    + +++ +     ++     +S  +         L   +
Sbjct: 926  VGLENNIYVQVGLIMLIGLLAKNAILIIEFA---VQQRDRGLSIVEAALTGAQMRLRPIL 982

Query: 774  YTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK- 829
             TS+A    ++P+    G S I   S +   A G++      IFI   + +       K 
Sbjct: 983  MTSLAFVAGLVPLMWTVGPSAIGNHSISFSAAGGMLFGVLLGIFIIPVLFIVFKTLDEKV 1042

Query: 830  NARI 833
              ++
Sbjct: 1043 RNKL 1046



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/198 (17%), Positives = 82/198 (41%), Gaps = 12/198 (6%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           + LE + K   E +             +   ++        I+  I + I++     +  
Sbjct: 308 KTLEGMAKSFPEGIKYEITYAVRDQIDESINQVKHTLFEAFILVFIIVFIFLQ---DFRS 364

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  T  F  LFG   N+  + A++  IG  V+D +VV + + + M  + 
Sbjct: 365 TLIPAIAIPVSLVGTFFFLQLFGFSLNVLTMFALVLAIGIVVDDAIVVVEAIHQKM--HA 422

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVI--GSFAIPMAFGIVV 807
           T +  R+    +++E  G  +  S+   ++ + +    + G + I    FA  +A  I++
Sbjct: 423 TGLKAREATLSTMSEITGAIL--SITMVMAAVFLPVGFMEGPAGIFYRQFAYTLATAILI 480

Query: 808 AASSSIFIAAPILLFIYD 825
           +A +++ ++  +   +  
Sbjct: 481 SALNALTLSPALCALLLK 498



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 52/526 (9%), Positives = 144/526 (27%), Gaps = 47/526 (8%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            ++ P   +   +I   G+ + +         +          +  G  L   + ++ + D
Sbjct: 544  KHKPLTWVGLILITAAGVFLMVHAPKSFIPTEDDSFITYSLAMPPGASLTRTTEVLRQAD 603

Query: 62   EDDFVNGFLQMYSDELR--SFLKKEGIGVFSMRQIQNKITLSFADSR------FKENIAD 113
                +        ++++  + +    +   S         ++             E   D
Sbjct: 604  S--ILKNR-----EDIKGMTTVSGFNVLDGSSSPAFAAGYINMLPHAERKKIHNIEAFMD 656

Query: 114  KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
             +   L  +N        +  +    +     ++ Q+ +   I      +   I   I++
Sbjct: 657  TIRKDLSQINEAKFTVFPRPTVQGFGDFAGIELVLQDRLGGDIRDFNTIADTFI-NEINE 715

Query: 174  IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
            +   E+      ++    ++    D  + + L     ++           +   F     
Sbjct: 716  LPEIENAYTAFKANFPQYEVN--IDAVKAKTLGVDIKQLMTTIRAYFARVQAGDFSRFGR 773

Query: 234  RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            +                   +         K  +    I             T   + K 
Sbjct: 774  QY-----------------RVYVQADMDYRKDPESFNSIFVRNKNGEMVPVSTILTLEKV 816

Query: 294  LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            +      R      I+      K   +G+       +    L        +N   E    
Sbjct: 817  VGPETITRYNLYNAISVNATPSKGYSTGDAMKAIQKLADDKL-------PVNYGFEWTGM 869

Query: 354  ADLGSDSIYKGTCAIVAGLVLIVLFMIVLY--GKWGLVADFSIFLNVILTLALLSLLGAT 411
            +   S S  +        ++ +   +   Y           S+ + ++     + ++G  
Sbjct: 870  SFEESQSGSQTILIFALSILFVYFLLSAQYESYILPWAVLLSVPVGLVGVYGTILMVGLE 929

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
              +    G+++ IGL   + IL+ E   ++  +  S+  +   G       I  +++  +
Sbjct: 930  NNIYVQVGLIMLIGLLAKNAILIIEFAVQQRDRGLSIVEAALTGAQMRLRPILMTSLAFV 989

Query: 472  IATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
               V L +  G +       + +    +L  +   I I+  + I  
Sbjct: 990  AGLVPLMWTVGPSAIGNHSISFSAAGGMLFGVLLGIFIIPVLFIVF 1035


>gi|94985539|ref|YP_604903.1| acriflavin resistance protein [Deinococcus geothermalis DSM 11300]
 gi|94555820|gb|ABF45734.1| Cation/multidrug efflux pump [Deinococcus geothermalis DSM 11300]
          Length = 1123

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 66/550 (12%), Positives = 152/550 (27%), Gaps = 50/550 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              + + ++  I   G +      +        P                          
Sbjct: 23  RYVFAIGIFVGIVVFGFVSMRALGVDLLPSVNIPVVNISTS--------------YAGAS 68

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V+  +    +   + +        S     +++TL   D   +  + ++V   +   
Sbjct: 69  PASVDEEVTQVIESAVAQVPNVTSISSSSSTGNSRVTLQLEDGTDQNAVVNQVASLVSSA 128

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L        + T       I+  +  +    +   +    +  Q +  +   E    
Sbjct: 129 ARQLPDGASNPSVRTFNPNAQPIL--EFGVSGGTASQADVYDYVQNQLVPLLQRVEGVAD 186

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S      +    DP +L     T   ++      N                      
Sbjct: 187 VELSGGSQRNIEVLLDPDKLSAYGLTPQSVASAISGSNVRASI----------------- 229

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +  SG  LN  T             I   + G R     +  +             
Sbjct: 230 --GTITQSGNSLNYTTNAKLRSLDDIANVILNADKGVRVADVASVKDA----TTTTGVTR 283

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +    +        +  +    ++    L A                   G    S +  
Sbjct: 284 VNGLPVVLVSIQQASGSNAVKVVDGVKALIA--GTRLPAGYQVTYSNDTTGPIRESIAST 341

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A +V +V  + +           +I +++     L  LLG T    S+  +++
Sbjct: 342 THELWITALVVALVTLLFLGRLNTAFTVIAAIPISLAAAPILYKLLGFTFNQVSLLALIV 401

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            IG+ VD +I+V E +            S+  G S  +S +  ++++ L   + + F GG
Sbjct: 402 AIGIVVDDSIVVAENVERYRTLGFGRVESVLRGASEVFSAVAAASLSLLAVLIPVSFMGG 461

Query: 483 GA---VRGFAITMGLSILISMFTAISIVRAMMIF------IIRYKKMKSIDINPLSRFFL 533
                ++ FA+ +  ++L+S   A+  +   M +      +      +++   P +  + 
Sbjct: 462 IIGAYIQQFALGLAAAVLMSWLEALLFLTVRMAYTPDAEPLGWRDVPRALARFPEAVRWG 521

Query: 534 IPDCIAIQFM 543
           +       F 
Sbjct: 522 LASVRTWWFW 531



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 72/203 (35%), Gaps = 8/203 (3%)

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
              Q ++   + +       ++   +       +  +L   G+    +S + + + +  +F
Sbjct: 899  ELQQQLTAALTQAGVIDNLVTVGSDDRNSAFALGNQLSSLGLQAFGLSLLLVYLVMGAQF 958

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              + + L  +  +   +        L     ++  V   L LIG S  + ++  + + + 
Sbjct: 959  NSFRYPLYLLLPVPFAVAGAYWAVFLTDSTLDIFGVLGFLLLIGLSAKNAIIYLEFVVEQ 1018

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
            ++        R+ + ++        + T++   +  LP+ +    G     S +I +  G
Sbjct: 1019 LQE----RPLREALIEASRLRFRPIIMTTLTVLVISLPLLLNRGSGSEFGKSLSIVIVGG 1074

Query: 805  IVVAASSSIFIAAPILLFIYDWR 827
            I ++A  + ++           R
Sbjct: 1075 ISISALMTFYVVPAAFYLFERRR 1097



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 94/272 (34%), Gaps = 10/272 (3%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V  SI     S   L                + + A++ V ++ V S  ++     ++  
Sbjct: 225 VRASIGTITQSGNSLNYTTNAKLRSLDDIANVILNADKGVRVADVASVKDATTTTGVTRV 284

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
           N        ++             V  ++           T  N      + S       
Sbjct: 285 NGLPVVLVSIQQASGSNAVKVVDGVKALIAGTRLPAGYQVTYSNDTTGPIRESIASTTHE 344

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           +   I + +  L+ +    +   A   I  + + +      + L G  FN  ++ A++  
Sbjct: 345 LW--ITALVVALVTLLFLGRLNTAFTVIAAIPISLAAAPILYKLLGFTFNQVSLLALIVA 402

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           IG  V+D +VV     +N++ Y T      + + +  +E        S++    ++P++ 
Sbjct: 403 IGIVVDDSIVVA----ENVERYRTLGFGRVESVLRGASEVFSAVAAASLSLLAVLIPVSF 458

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
            GG +   I  FA+ +A  ++++   ++    
Sbjct: 459 MGGIIGAYIQQFALGLAAAVLMSWLEALLFLT 490


>gi|24215139|ref|NP_712620.1| heavy metal efflux pump [Leptospira interrogans serovar Lai str.
           56601]
 gi|24196205|gb|AAN49638.1| heavy metal efflux pump [Leptospira interrogans serovar Lai str.
           56601]
          Length = 1080

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 72/682 (10%), Positives = 186/682 (27%), Gaps = 49/682 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + ++ +L  ++  IG   A+     +   + FP+                   V   
Sbjct: 9   LSKSIFVNLLTFLVILIGGFTAV-----KMNREAFPNINFDIV---------SVVTVFPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF-ADSRFKENIADKVTLFL 119
                +   +    +E    +        +  + ++ I ++   DS+  + + D +   +
Sbjct: 55  ASPSEMEKLVTKPLEEAIQEVDGIKEFRSASIENRSGIVITLDPDSKNTQKVVDDIKSAI 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQIGIS 177
             V   L  + +  ++   T     ++    +   +     A +      +     +   
Sbjct: 115 DRVE-DLPEEAEDPIVTEITTSRQPVIEINISLKSNDSSIEAEKHLKAQAKIVEQALEDI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +         ++  + DP  +     T+  + F     N +  G            
Sbjct: 174 PGVARISKRGWRDTEMQVDIDPVAMFSKYLTSQDIIFALKNRNINFPGGNIAGNQKEVIL 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                     EI  +H+                                   + + L   
Sbjct: 234 RTIGEFNSPKEIETVHVRSNEV-------------------GNSIRIDNVARVTEGLKEA 274

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +            + +      ++ A  +    +  S                  
Sbjct: 275 EYLDKVNGKKTIALTVIKREKADAILVVDEAKKIIEEFKKNSKNEFEYAFVNDLSKYIRR 334

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
              +          LV   LF+ +   +  L+    I ++   T  ++  LG TL L S+
Sbjct: 335 RLGVLLSNAIGGLILVTASLFLFL-GWRVALMTALGIPVSFGATFVIMDYLGLTLNLISM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+++ +G+ VD  I++ E +     +    + +   G S     +  +  T + A   +
Sbjct: 394 FGLIIVVGILVDDAIIICENVYRYMEEGMPAYEAALKGTSEVIDPVTATVTTTVAAFAPM 453

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM----KSIDINPLSR 530
            F  G   +      + + +++L S+  A  I+ + +  I ++K      K         
Sbjct: 454 LFMTGIFGKFIYSIPLVVIIALLASLSEAFFILPSHLYDINKHKFHSGEIKEESGWFYKL 513

Query: 531 FFLIPDCIAIQFMRAR-FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                  +    ++ R    + +  +                        Q+ +     +
Sbjct: 514 KVNYYLPLLKFALKHRLQIFIYLFAMLVGSFALFAVFGRFKLFPGSVDVFQIKLTGQTGI 573

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L  +     +L+         + E         Q   +   T+  +   + +  + P  
Sbjct: 574 SLQEMEKFTHALETELAKISKEEIENYVTRVGIIQKDPNDPFTKRGKHYAQVLVYMTPEE 633

Query: 650 TIQNTEIVGPKISRELIRKGIV 671
             +        I  E+  K I 
Sbjct: 634 NRKRGT---DTIISEIREKTIW 652



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 86/254 (33%), Gaps = 9/254 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V +N   +   + +     +    +           + L     +      V++  K
Sbjct: 247 TVHVRSNEVGNSIRIDNVARVTEGLKEAEYLDKVNGKKTIALTVIKREKADAILVVDEAK 306

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV---IISAIAMLIYIWIRFKWYFALGA 696
           K I E    S  +        +S+ + R+  V +   I   I +   +++   W  AL  
Sbjct: 307 KIIEEFKKNSKNEFEYAFVNDLSKYIRRRLGVLLSNAIGGLILVTASLFLFLGWRVALMT 366

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + +    T       G+  NL ++  ++ ++G  V+D +++ + +    +     + 
Sbjct: 367 ALGIPVSFGATFVIMDYLGLTLNLISMFGLIIVVGILVDDAIIICENV---YRYMEEGMP 423

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
             +   K  +E +     T      +  PM       G  I S  + +   ++ + S + 
Sbjct: 424 AYEAALKGTSEVIDPVTATVTTTVAAFAPMLFMTGIFGKFIYSIPLVVIIALLASLSEAF 483

Query: 814 FIAAPILLFIYDWR 827
           FI    L  I   +
Sbjct: 484 FILPSHLYDINKHK 497



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 80/231 (34%), Gaps = 5/231 (2%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
            +  + DG++   V        +  +    E+ K     I      +       K + E +
Sbjct: 845  NINHLDGKRLLTVTANLDEIKTDTRRANAEIAKLSKGIIDKYPGYRMRFGGENKDTEESL 904

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                   +++ I + + +   F+     +  ++++   +   +  F L G  F   A   
Sbjct: 905  ASLGRAFLVAFIIIFMILASLFRSLIQPVIVVSSIPFSLIGVILAFVLHGEYFGFLAFLG 964

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL-IDKSINETLGRSVYTSMAAFISVL 784
            ++ L G  VND +V+ D     +KL         + ++  +       + T       + 
Sbjct: 965  IVGLAGVVVNDSIVLVD-FANQLKLEKPGEDIDSILVETGLLRLRPVVLTTVTTVLGLLP 1023

Query: 785  PMAVWGG--SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                 GG    +   A+   +G+  ++  ++     +   +++ + K  R+
Sbjct: 1024 TAYGIGGKDPFLVPMALAFGWGLAFSSFLTLVAVPVLYKTVHNVQLKINRV 1074


>gi|304321872|ref|YP_003855515.1| RND family efflux transporter [Parvularcula bermudensis HTCC2503]
 gi|303300774|gb|ADM10373.1| RND family efflux transporter [Parvularcula bermudensis HTCC2503]
          Length = 1034

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 69/518 (13%), Positives = 156/518 (30%), Gaps = 44/518 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +L  +I   G             +   P       +S+  +L GG        
Sbjct: 14  KRPLLITVLNLLIVIAGAAAMF-----GIEIRELPDVDRP-IVSVRANLPGG-------- 59

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        S  +   ++ + F      +N +  V   +  
Sbjct: 60  APETIDAEVTSVLEGAVARVSGVREIRSSSEENNARMRIEFNPGVDLDNASADVREAVSR 119

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    +   +    E    I+      D +     E +  I      +I       
Sbjct: 120 VTRELPDRAENIFVTKADEDADPIIDLAIISDVLPED--ELTRIIETDIAPEILSVNGVA 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   L Q+    DP RL +   T + ++              F  +        + 
Sbjct: 178 AVQEFGTRLRQMRVVIDPPRLNRFGFTVSDVADALRQAPFDVPAGSFRSQDQELIVRAEA 237

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  I  + ++                                 ++    A   +  
Sbjct: 238 TAATPDLIKEVIIDQQ------------------------IRVGDVADVILAPADAENLL 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    I       +AQ +     +      A L      +    V          S   
Sbjct: 274 RLDGTPIIGLGIVRQAQSNTIEISDAVAAKVAALNGRFEDLS-IRVLSDEAVFIRTSVRE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      +V+  +++ +  GK  L+   +I + +I T++ + L+G ++ L ++  +V
Sbjct: 333 VVTSLIFTVLIVVTTIWLFLGSGKATLIPSVAIPVALIGTISGIWLMGFSINLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E ++ +  +      +  +G  + +  +  +    +   V + F  
Sbjct: 393 LATGLIVDDAIVVLENVQRQQSQGLKRHAAAAIGTQQVFFAVVATTAVLVAVFVPISFLP 452

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
              G   R F   + ++++IS F A+++  AM      
Sbjct: 453 STAGRLFREFGFVLAMAVIISSFVALTLAPAMAAQFKF 490



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/247 (10%), Positives = 83/247 (33%), Gaps = 8/247 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+ ++ + +  V   + +    +   +        L  ++    +++  +  +      
Sbjct: 247 EVIIDQQIRVGDVADVILAPADAENLLRLDGTPIIGLGIVRQAQSNTIEISDAVAAKVAA 306

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTL 700
           +                    R  +R+ +  +I + + ++  IW+        L     +
Sbjct: 307 LNGRFED-LSIRVLSDEAVFIRTSVREVVTSLIFTVLIVVTTIWLFLGSGKATLIPSVAI 365

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            + +  T+    L G   NL  + A++   G  V+D +VV + +    +  +  +     
Sbjct: 366 PVALIGTISGIWLMGFSINLLTLLALVLATGLIVDDAIVVLENV---QRQQSQGLKRHAA 422

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                 +     V T+       +P++      G +   F   +A  +++++  ++ +A 
Sbjct: 423 AAIGTQQVFFAVVATTAVLVAVFVPISFLPSTAGRLFREFGFVLAMAVIISSFVALTLAP 482

Query: 818 PILLFIY 824
            +     
Sbjct: 483 AMAAQFK 489



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 83/231 (35%), Gaps = 7/231 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             S+L ++    ++ +    E+   + ++      VA    +  +++   E +P       
Sbjct: 777  MSSLTTMVEEGVAAELDRVEQRRAIEVESDVATGVALADAVLEIERLAAETLPDGIEMRL 836

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
            +     +        I       I  L+ +         +  + T+   +   +    L 
Sbjct: 837  QGEAETLQESSRDLMITYAFALLIVFLVLVAQFESLTSPIVVMLTVPFALAAAIYVLWLT 896

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+ +   ++ LIG    + +++ +      +L     + R+ + ++        + 
Sbjct: 897  GGSLNIYSQIGLILLIGLMAKNGILLVEFA---DQLRGEGRTVREAVREAALLRARPIMM 953

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            T ++  +  +P+ + GG       +    +  G+ +AA  ++F+  PIL  
Sbjct: 954  TVISTALGAVPLILSGGAGAEARSAIGWVVFGGLGLAALFTLFL-TPILYL 1003


>gi|256822488|ref|YP_003146451.1| CzcA family heavy metal efflux pump [Kangiella koreensis DSM 16069]
 gi|256796027|gb|ACV26683.1| heavy metal efflux pump, CzcA family [Kangiella koreensis DSM
           16069]
          Length = 1064

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 84/691 (12%), Positives = 194/691 (28%), Gaps = 59/691 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED------ 63
           L   I  I L ++    +P+  LD FP                 +++ + V+ +      
Sbjct: 14  LLVAIALITLTVSAFFIIPRLNLDAFPDV---------------TNVQVSVNTEAPGLAA 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    + +   L          +   + +T+ F +          V   LQ   
Sbjct: 59  EEVEQLITYPIEAVMYALPDVEEVRSISKTGLSGVTVVFKEDTDIYFARQLVFERLQAAK 118

Query: 124 SKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +        +   T+                   A+E            +  +E    
Sbjct: 119 ELIPEGVGTPEMGPNTSGLGQVYQYLLVAEPGSGFDAMELRSLNDWVVKLLLIPAEGVTD 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L     + Q   + +PS+L     T   +       N +  G+        +    Q +
Sbjct: 179 VLSFGGEVRQYQVDLNPSKLLSYGLTQDDIMAALERNNTNVGGWYM------NRGQEQLV 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +     +             P        I+  ++         R           DG+V
Sbjct: 233 IRGTGWLEHGKQGLEQIRQVPLKTVDGTTITVSDVAKVNLGSEIRQGAVTMTRRTSDGKV 292

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +   TI+        +                      +    
Sbjct: 293 EALGEVVSGIVLKRLGANTKSTIDGVNARIERINQALPEGVKFEAYYDQADLVTQAVDTV 352

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +    ++++L + ++  +  L+   SI +++ + L +++  G +  L S+ GI +
Sbjct: 353 VNALLLAFVFIVVILALFLMNLRATLLVLISIPISIGIALMVMAWFGLSANLMSLGGIAV 412

Query: 423 GIGLAVDSNILVNERIREENRK---------------NQSVFCSLDMGF----------S 457
            IG+ VD ++++ E + +                   +     +                
Sbjct: 413 AIGMLVDGSVVMVENMFKHLTHPDATHDKDRQTMVQDDPDPVDAAHDSHGIALRLQEAGR 472

Query: 458 RAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                IF +    L+  + LF F G      +  AI++ LS+L ++  A+ IV A+  ++
Sbjct: 473 EVARPIFFATGIILVVFMPLFSFEGVEAKLFQPMAISIMLSMLSALIVALIIVPALATYL 532

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
            R                L    ++     ++        L    ++ +           
Sbjct: 533 FRKGIRPRESFVLKPLDKLYRKGLSWAMSHSKVVVGIAVTLVVAAALVIPRLGTEFVPEL 592

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +G + L V        S + + LE     +     F      L R+         +   
Sbjct: 593 EEGTVNLRVTL---APSSSLDTALEVAPKLEAMLMEFPEVTYALSRIGRAEIGGDPEPVN 649

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
              +   +  +   ++  N       + ++L
Sbjct: 650 NIEIYIGLKPVPEWTSADNRYEFQSLMEQKL 680



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 33/320 (10%), Positives = 101/320 (31%), Gaps = 28/320 (8%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +  +         L     +         I +  +A   +   + +  +
Sbjct: 222 WYMNRGQEQLVIRGTGWLEHGKQGLEQIRQVPLKTVDGTTITVSDVAKVNLGSEIRQGAV 281

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
              +          GE    + L+    ++ +    +    ++I + +P           
Sbjct: 282 TMTRRTSDGKVEALGEVVSGIVLKRLGANTKSTIDGVNARIERINQALPEGVKFEAYYDQ 341

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE 717
             +  + +   +  ++++ + +++ + +        L  + ++ + I   L   A FG+ 
Sbjct: 342 ADLVTQAVDTVVNALLLAFVFIVVILALFLMNLRATLLVLISIPISIGIALMVMAWFGLS 401

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL----------------- 760
            NL ++  +   IG  V+  VV+ + M K++     +                       
Sbjct: 402 ANLMSLGGIAVAIGMLVDGSVVMVENMFKHLTHPDATHDKDRQTMVQDDPDPVDAAHDSH 461

Query: 761 -----IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
                + ++  E      + +    +  +P+  + G     F  PMA  I+++  S++ +
Sbjct: 462 GIALRLQEAGREVARPIFFATGIILVVFMPLFSFEGVEAKLFQ-PMAISIMLSMLSALIV 520

Query: 816 A----APILLFIYDWRAKNA 831
           A      +  +++    +  
Sbjct: 521 ALIIVPALATYLFRKGIRPR 540



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 695  GAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              +  + + +    G F+L   G   ++ +    +TL G +V + VV+ + +    +   
Sbjct: 925  AMLILVNVPLAVIGGVFSLWLSGQYLSVPSSVGFITLFGVAVLNGVVMVESIN---QRIK 981

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              +   +         L   + T++ + + ++PM +    G  +    A  +  G++ A 
Sbjct: 982  DGLPVSEAAFDGAVSRLRPVLMTAVTSALGLIPMLLSNGVGAEIQKPLASVIVGGLITAT 1041

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
              ++F+   +  +    + K  
Sbjct: 1042 FLTLFVLPVLFAWFSKGKLKEK 1063


>gi|239616815|ref|YP_002940137.1| acriflavin resistance protein [Kosmotoga olearia TBF 19.5.1]
 gi|239505646|gb|ACR79133.1| acriflavin resistance protein [Kosmotoga olearia TBF 19.5.1]
          Length = 1042

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 64/526 (12%), Positives = 154/526 (29%), Gaps = 25/526 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + +L   +  +G++           +D FP+        +   L  G        
Sbjct: 11  RKPISVFLLTISLILLGIVA-----WQDIPIDLFPNISFPYAAVVTPYLGAG-------- 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E    +              + + + F           K+   +  
Sbjct: 58  -PEEVEVNVTNPIEEAVGLVSGVKRISSRSFDSFSVVEVEFEWGTDISYAVSKIRELIDA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  D    ++V      I + +      +  +        + +     +   +   
Sbjct: 117 FARDLPEDVD-PIVVEFNPAMIPVYVVGIGTKEPNN-----IETLSKDLQQNLSRLDGVA 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL-PNNSKKGFMFGVRFLRDSDGNQ 240
                     ++  + DP +L ++      +                        S   +
Sbjct: 171 NVEILGIPDKEVLIDVDPEKLEKMEIPFDSVKIMLSAGTKYPMGKITEEDNVYPLSVSTK 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           +    ++E + I   G +   + ++   + D                 ++G     V  G
Sbjct: 231 FASLKELEETIIGFRGMSRYINFQSLSSISDGLKLPPFFVPVRLKQVADVGIKQKEVRGG 290

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + A      +   +  ++     +        L     P  +             + +
Sbjct: 291 VRVNAESAAVLVVQKRGGMNTIKVAKKVRER-LSLWKEEHPGVVIQTITDTSEFTNMAIN 349

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  + A +  IV+++ +      L    SI L+++  + L+        L ++ G+
Sbjct: 350 GLFKNLLLGAIVATIVIYLFLRSVSATLAVTVSIPLSLLTAIMLMYFSKLNFDLMTLGGL 409

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G+ VD++I++ E I     +  +   +   G       IF S +T L   V   F 
Sbjct: 410 TVAVGMVVDNSIVILEAIYRYLEEKMNPVEAASKGGREVVGAIFASTMTTLAMFVPFAFI 469

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            G      + FAI++  +++ S F AI++V A    +         
Sbjct: 470 TGFAAQLFKFFAISLSFTLIASFFIAITVVPAFANIVKAKPSRDHR 515



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/167 (19%), Positives = 72/167 (43%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  +I+  I M + I  +F+   + L    TL + +        L GI  N++ +  +LT
Sbjct: 868  LKAMIMGIILMYLIIGAQFESLVYPLVIFFTLPMALVGVALVVYLTGITVNVSTLMGMLT 927

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L G +VN+ +V+   +    +L    +  R+ I +         + T++   I+++P AV
Sbjct: 928  LAGITVNNGIVMITYIN---QLRERGMEKREAIIEGAARRSRPILMTTLTTIIALIPTAV 984

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G  +    A+ +  G+++    ++F+   +   I     +  +
Sbjct: 985  SNAAGSELDRPMALTVVGGLLMGMVFTLFLIPLLYDIIDKISLRFTK 1031



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 21/164 (12%), Positives = 63/164 (38%), Gaps = 6/164 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++ + +A ++           L    ++ L +   +       + F+L  +  +   +G 
Sbjct: 356 LLGAIVATIVIYLFLRSVSATLAVTVSIPLSLLTAIMLMYFSKLNFDLMTLGGLTVAVGM 415

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            V++ +V+ + +    +     ++  +   K   E +G    ++M      +P A    +
Sbjct: 416 VVDNSIVILEAI---YRYLEEKMNPVEAASKGGREVVGAIFASTMTTLAMFVPFAFITGF 472

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              +   FAI ++F ++ +   +I +       +    +++ RI
Sbjct: 473 AAQLFKFFAISLSFTLIASFFIAITVVPAFANIVKAKPSRDHRI 516


>gi|256420191|ref|YP_003120844.1| acriflavin resistance protein [Chitinophaga pinensis DSM 2588]
 gi|256035099|gb|ACU58643.1| acriflavin resistance protein [Chitinophaga pinensis DSM 2588]
          Length = 1191

 Score =  131 bits (328), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 68/671 (10%), Positives = 186/671 (27%), Gaps = 42/671 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
            +   ++   G++            ++FP  +           +     +      + + 
Sbjct: 23  YVATIILALAGIMS-----YQSLPKEQFPEVVFP---------QFYISTIYSGTSPEDME 68

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    ++    +        +  Q  + IT+ F  S   E    +V   +      L 
Sbjct: 69  TLVTKPIEKQLGGISGVKSIKSTSMQDYSAITIEFDASENMETARQEVREKVDDAKKDLP 128

Query: 128 VD-PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
            D  ++  ++     +I I+    + D  +    + + E      D+I       +    
Sbjct: 129 NDLTQEPQIIKIDVSQIPIMNVNLSGDFDLQSLKKYADE----MQDRIEALNEITRVDIV 184

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +  ++    D  ++     T   ++    + N +      G     D       V+  
Sbjct: 185 GALEREIQINVDKYKMDAAKITFDDVANAIAMENRTIS----GGLVSMDGQKRTLSVKG- 239

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
                          + K    + DI    M     +      +            L   
Sbjct: 240 ---------------EYKDANKIRDIVVRGMSGATVYLKDVAEVVDGFEEQESYARLDGK 284

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +       ++  +     +   ++   ++A  LP  L++    +               
Sbjct: 285 NVITLNVIKQSGKNLIDASDKIRVIIDEMKADYLPAGLDVTVTADQSNSTRVTLHDLINT 344

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            I+  L++ ++ M  +     +    S+ +++ +   L+ +   TL +  +   +L +G+
Sbjct: 345 IIIGFLLVTLILMFFMGAVNAIFVALSVPISMFIAFLLMPMYDFTLNMMVLFSFLLALGI 404

Query: 427 AVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            VD  I+V E +     + +   +  +  +     +  +F   +T L     L F+ G  
Sbjct: 405 VVDDAIVVIENVHRIFYERKDLGIVKAAKVAAGEVFLPVFSGTLTVLAPFFPLLFWPG-I 463

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           +  F   + ++++ ++  ++ +   +          +    N     F     I      
Sbjct: 464 IGSFMFFLPVTLITTLGASLIVAYIINPVFAVDFMDRHEGENHPKPTFNRSMKILTIVFV 523

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  +S    + +  L     +     + GG+      N    +      +    + 
Sbjct: 524 VIALLAYVSGSKGVGNFTLFALTMIMLERFWLGGVARRFQTNTWPRVQERYRKVLKWCLV 583

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                        L+          +   V             +     T+         
Sbjct: 584 GWRPVWILISTFALLLFSIMLTVVTSPKVVFFPQADPNFIYTYIELPMGTDQKYTDSVTH 643

Query: 665 LIRKGIVGVII 675
           +I + I  V+ 
Sbjct: 644 IIEQKITAVVG 654



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/201 (12%), Positives = 68/201 (33%), Gaps = 2/201 (0%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              V  Q       A  ++  ++ +   + +P              +R  +   I  +II
Sbjct: 288 TLNVIKQSGKNLIDASDKIRVIIDEMKADYLPAGLDVTVTADQSNSTRVTLHDLINTIII 347

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + + + +        A+    ++ + +        ++    N+  + + L  +G  V+
Sbjct: 348 GFLLVTLILMFFMGAVNAIFVALSVPISMFIAFLLMPMYDFTLNMMVLFSFLLALGIVVD 407

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           D +VV + + +        +        +  E        ++       P+  W G +IG
Sbjct: 408 DAIVVIENVHRIFYE-RKDLGIVKAAKVAAGEVFLPVFSGTLTVLAPFFPLLFWPG-IIG 465

Query: 796 SFAIPMAFGIVVAASSSIFIA 816
           SF   +   ++    +S+ +A
Sbjct: 466 SFMFFLPVTLITTLGASLIVA 486



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 92/255 (36%), Gaps = 27/255 (10%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + +++  +        ++  +V L            V++ ++  I +      I    
Sbjct: 863  SAVATIKYSNTYASIKRIDQKRVVTLYSNVLTGFNTNEVVQQIQTAIQDFPKTPGISVKM 922

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +  +E      + ++ +   +L+ +  +F      L     ++  I      FA+F
Sbjct: 923  TGEQEDQQETSNFLGMAMLGAFGLILMIMVTQFNSIGRPLVIFMEILFSIIGVFLGFAIF 982

Query: 715  GIEFNL-TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G++ ++      ++ L G  V + +V+ +       L    +   + + ++    +   +
Sbjct: 983  GMDISIVMTGVGIMALAGIVVRNGIVLVEF---TDLLIQQKMPVYEAVIEAGRTRMTPVL 1039

Query: 774  YTSMAAFISVLPMA------------------VWGGSVIG---SFAIPMAFGIVVAASSS 812
             T++AA + ++P+A                   +GG  +      A  M +G+V A   +
Sbjct: 1040 LTAIAAILGLIPLAVGFNIDFAGLFSSFEPHIFFGGDNVAFWGPLAWTMVYGLVFATFLT 1099

Query: 813  IFIAAPILLFIYDWR 827
            + I  P++  +    
Sbjct: 1100 L-ILVPVMYAMNKRS 1113


>gi|124514931|gb|EAY56442.1| Heavy metal efflux pump, CzcA family [Leptospirillum rubarum]
          Length = 1067

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/527 (13%), Positives = 148/527 (28%), Gaps = 39/527 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W+++L  ++   G +  +     +S LD  P       I            V    
Sbjct: 11  RKRYWVLVLSFLLLAWGGVSLI-----RSPLDAIPDLSDTQVI---------VKAVYHGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + I + F +   +     +V  +L  
Sbjct: 57  PPIVVENQVTYPLTTAFLTIPGVRHVRGYSDFGNSLIYILFKEGTDQYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L       L    T                     +           ++       
Sbjct: 117 VESRLPPGVTATLGPDATGLGWVYEY-ALVDRNNRYDLSQLRALQDWFLKFELQSIHGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP +L     T +++       N    G +  +   +     + 
Sbjct: 176 EVASVGGMVKEFQVVVDPKKLLAYRVTLSRVERAIRSSNGDVGGSVVDMGEAQYMVRTRG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                    + ++    G              P        
Sbjct: 236 YIHTLSDIRN------------------IPLAVGSSGDPVRLSDVASVHLGPELRQGVAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    I         L          +         L S   
Sbjct: 278 LDGKGEVAGGIVITRGGTNALDVIRAVKEKVRALSPMLPAGVEIVTTYDRSRLILKSIKN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   +  V +V  + +   +  LVA  S+ + +     L++  G T  + S+ GI 
Sbjct: 338 LLEKLLEESIAVSLVCLLFLSRVRSSLVAILSLPVGIFAAFVLMARQGLTANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENRK---NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + IG+ VD+ I++ E + +   +    ++ + +          ++F S +   ++ + +F
Sbjct: 398 VSIGVMVDAAIVMIENMHKHRERSDDGENPWDTALRSAREVGPSLFFSLLVITVSFLPIF 457

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
                 G   +  A T   SI IS   +I++V  +M F+IR K    
Sbjct: 458 ALQEQEGRLFKPLAFTKTYSIAISAALSITLVPVLMGFLIRGKIAPE 504



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 87/248 (35%), Gaps = 7/248 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  +    + +     + +   D   +   G                 + +V  +     
Sbjct: 257 VRLSDVASVHLGPELRQGVAELDGKGEVAGGIVITRGGTNALDVIRAVKEKVRALSPMLP 316

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +  ++T   + ++   I   L +     + +S +     +    +   +L AI +L +
Sbjct: 317 AGVEIVTTYDRSRLILKSIKNLLEKLLEESIAVSLVC----LLFLSRVRSSLVAILSLPV 372

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I       A  G+  N+ ++  +   IG  V+  +V+ + M K+ +      +  D   
Sbjct: 373 GIFAAFVLMARQGLTANIMSLGGIAVSIGVMVDAAIVMIENMHKHRERSDDGENPWDTAL 432

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +S  E      ++ +   +S LP+       G +    A    + I ++A+ SI +   +
Sbjct: 433 RSAREVGPSLFFSLLVITVSFLPIFALQEQEGRLFKPLAFTKTYSIAISAALSITLVPVL 492

Query: 820 LLFIYDWR 827
           + F+   +
Sbjct: 493 MGFLIRGK 500


>gi|326335401|ref|ZP_08201588.1| RND superfamily resistance-nodulation-cell division [ligand]:proton
           (H+) antiporter [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325692167|gb|EGD34119.1| RND superfamily resistance-nodulation-cell division [ligand]:proton
           (H+) antiporter [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 1443

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 77/682 (11%), Positives = 187/682 (27%), Gaps = 54/682 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  ++  +  M+   G+  A      +  +D  P                   + +   
Sbjct: 11  KNKLFVGFMTLMLIFWGVWSA-----TRLPIDAVPDITNN-------------QVQIITS 52

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +  ++       ++  + +          R   + IT  F++          V  
Sbjct: 53  TPTLASQEVEQLVTFPIEQAIANIPGLEETRSISRFGLSVITAVFSEDMDIYFARQLVNE 112

Query: 118 FLQGVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            L+    ++           + T   +    ++      +    A +           Q+
Sbjct: 113 KLKEAQEQIPQGIGSPELSPVSTGLGEVYQYIIRPTEQSKNKYSAKDLRTMQDWIVARQL 172

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             ++   +       L Q     DP RLR +  + + +       N +  G     R   
Sbjct: 173 YGTKGIAEINSFGGELKQYEVVIDPDRLRAMGVSVSDIFTALEQNNQNTGGAYIDKRPNA 232

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                  +     +I  I +   T     K    V   S    GA  +        G  +
Sbjct: 233 YFIRGIGMARSLEDIGNIAVGKHTPPLFIKHVAEVRLGSALRYGALSYNGEVDAVGGVVM 292

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +  +                    + +  +         ++       +          
Sbjct: 293 MLKGE--------------------NSHEVVSRIKEKLPTIQQSLPEDVVIEPFLDRTDL 332

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +    +      A +V+ +L + +   + GL+   +I L+++  L +++L G +  L
Sbjct: 333 VQRAIHTVEKNLLEGALIVIFILVLFLGNLRAGLIVATAIPLSLLFALGMMNLFGVSANL 392

Query: 415 PSIAGI--VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN----- 467
            S+  I   + +  +V     V   +       +     +D     + S I  S      
Sbjct: 393 MSLGAIDFGIIVDGSVIVVEAVMHHLAIRKNHQRLTQAQMDEEVFHSASKIRSSAAFGEI 452

Query: 468 --ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             +   I  + L    G   R  A T+  +IL ++  +++ + AM   ++          
Sbjct: 453 IILMVYIPILTLVGVEGKMFRPMAQTVVFAILGALILSLTYIPAMSALLLPKTVSDKRSF 512

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                 +L      +     R  G  I     +  + +     +      +      V  
Sbjct: 513 AERMISWLYRHYQPLFVRSIRLRGWIIGSTVVLFVLAVGIFSRMGGEFIPQLQEGDFVFE 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                 + ++ +LE+        + FD  K  + +       +         +   +   
Sbjct: 573 CILPPGTSLKQSLETSMQASRLIREFDEVKMVIGKTGSAEIPTDPMPLEASDIVIVLKSQ 632

Query: 646 VPLSTIQNTEIVGPKISRELIR 667
               + ++ E +G  I   L  
Sbjct: 633 DQWKSGRSYEELGDAIIERLKD 654



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 88/258 (34%), Gaps = 17/258 (6%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             + V    + S L    +      +  G    +++ +            L  +++ + E
Sbjct: 260 FIKHVAEVRLGSALRYGALSYNGEVDAVGGVVMMLKGENSHEVVSRIKEKLPTIQQSLPE 319

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
            V +    +   +  +    + +  +     + I + I +         L   T + L +
Sbjct: 320 DVVIEPFLDRTDLVQRAIHTVEKNLLE---GALIVIFILVLFLGNLRAGLIVATAIPLSL 376

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFR 758
              LG   LFG+  NL ++ A+    G  V+  V+V +       +RKN +  T +    
Sbjct: 377 LFALGMMNLFGVSANLMSLGAI--DFGIIVDGSVIVVEAVMHHLAIRKNHQRLTQAQMDE 434

Query: 759 DLIDKS----INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
           ++   +     +   G  +   +  +I +L +    G +    A  + F I+ A   S+ 
Sbjct: 435 EVFHSASKIRSSAAFGEIII--LMVYIPILTLVGVEGKMFRPMAQTVVFAILGALILSLT 492

Query: 815 IAAPILLFIYDWRAKNAR 832
               +   +      + R
Sbjct: 493 YIPAMSALLLPKTVSDKR 510



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 92/270 (34%), Gaps = 12/270 (4%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
             +   G   +  +     +  V  S L +++      Q         + + +       Q
Sbjct: 774  SLHRTGIDDVQHMMVATENGQVPMSQLATIKYELGPAQVSREAGKRRIVIGFNVQGRDVQ 833

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            + V ++ +K     +P             + +   R  I   +   +   +         
Sbjct: 834  SVVSDIEQKLKGVKLPTGYYFTYGGQFENLQQATDRLLIAVPVALLLIFFLLYLAFHSIK 893

Query: 692  FALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             +L   + + +      G FAL   G+ F+++A    + L G +V + +V+      N  
Sbjct: 894  QSLLIFSAIPMS--AIGGVFALLLRGMPFSISAGIGFIALFGVAVLNGIVLIGTF--NQL 949

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                  +    +       L   + T+M A +  LPMA+    G  V    A  +  G+V
Sbjct: 950  KKEGMTNLLHRVITGTEMRLRPVLMTAMVASLGFLPMALSQGAGAEVQRPLATVVIGGLV 1009

Query: 807  VAASSSIFIAAPILLFI---YDWRAKNARI 833
             A   ++F+   + +     + WR  +A++
Sbjct: 1010 SATFLTLFVLPLLYIAFNSTFSWRRPSAKV 1039


>gi|319791716|ref|YP_004153356.1| acriflavin resistance protein [Variovorax paradoxus EPS]
 gi|315594179|gb|ADU35245.1| acriflavin resistance protein [Variovorax paradoxus EPS]
          Length = 1055

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 73/549 (13%), Positives = 157/549 (28%), Gaps = 24/549 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            +  L     D +   + +  ++  S +           Q    +TL F  SR  +  A 
Sbjct: 47  VNAQLPGASPDTMASSVALPLEKQFSTIPGLQTISSVNTQGVTSLTLEFVSSRDIDAAAV 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   L     +L  +  +           + VL    +     +  E +          
Sbjct: 107 DVQAALLRAQRQLPQELTQLPSYRKVNPADAPVLF-IALISPSMNPAELNDYAENLISPT 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   Q     R    +  + +   L     T  +++      N +           
Sbjct: 166 LSTIDGVAQVGVYGRKAFAVRIKANADLLNARNITLDELARAVNSANANTPVGTLDGPRQ 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +      +    +                       +   +             I   
Sbjct: 226 TLTIQANRQLVKAADF--------------------AKLIVGQRNGAPVRLDEVATIEDS 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
              V                  +   +    ++    L    +A         +      
Sbjct: 266 FESVKTASSFNGQDSISLAVQRQPNANTVQVVDAVRALIPRFKAELPQSVEIQMVNDRSL 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           +   +    + T      LV++V+F+ +      L+   +I +++I  +ALL   G +L 
Sbjct: 326 SIREAVHDVQLTLLGTIALVVLVIFLFLHRLVATLIPAATIPISLIGAVALLYAFGYSLD 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+ GI L +GL VD  I+V E I     K    F +   G      TI   +I+ +  
Sbjct: 386 NVSLLGITLAVGLVVDDAIVVLENIMRYVEKGMEPFAAALRGAREVGFTIVSISISLVAV 445

Query: 474 TVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + +FF  G        FA+ + L++L+S   ++++V  +   +++    K   ++    
Sbjct: 446 FIPIFFMPGVIGLLFHEFAVVVALAVLVSAIVSLTLVPMLASRLLKQVPRKEGALDHEEE 505

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  I   F R      G  +     ++   +      G+ F     L +   +   
Sbjct: 506 HPEPGTAIGRAFERGYRAVHGAYMRTLDWTLVHRWVMLTAAGLTFVVTAWLFITIPKGFF 565

Query: 591 LSVVRSNLE 599
                  ++
Sbjct: 566 PEEDIGQIQ 574



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 23/211 (10%), Positives = 66/211 (31%), Gaps = 8/211 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  +    +     ++++    +         +        Q  D+V         +   
Sbjct: 254 VRLDEVATIEDSFESVKTASSFNGQDSISLAVQRQPNANTVQVVDAVRALIPRFKAELPQ 313

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
           +  + +   ++  I       +L   G + ++     +L+      +    L    T+ +
Sbjct: 314 SVEIQMVNDRSLSIREAVHDVQLTLLGTIALV-----VLVIFLFLHRLVATLIPAATIPI 368

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   +     FG   +  ++  +   +G  V+D +VV + +   M+     +       
Sbjct: 369 SLIGAVALLYAFGYSLDNVSLLGITLAVGLVVDDAIVVLENI---MRYVEKGMEPFAAAL 425

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +   E     V  S++     +P+    G +
Sbjct: 426 RGAREVGFTIVSISISLVAVFIPIFFMPGVI 456



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 5/146 (3%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   +   L  +  L       L    +FG +  L A   +L LIG    + +++ D  
Sbjct: 885  VLYESYIHPLTILAGLPSAAVGALLSLKIFGFDLTLIATIGILLLIGIVKKNAIMMIDFA 944

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
                   T  +   D I ++        + T++AA +  LP+A+    G  +     + +
Sbjct: 945  LD--AQRTEGMKPVDAIREACRLRFRPILMTTLAALMGALPLALGLGAGAELRQPLGVAV 1002

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWR 827
              G++ +   +++I   I L +  + 
Sbjct: 1003 VGGLIFSQVITLYITPAIYLALDRYS 1028


>gi|300703851|ref|YP_003745453.1| multidrug efflux transporter acrb transmembrane domain [Ralstonia
           solanacearum CFBP2957]
 gi|299071514|emb|CBJ42838.1| putative multidrug efflux transporter AcrB transmembrane domain
           [Ralstonia solanacearum CFBP2957]
          Length = 1032

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 77/678 (11%), Positives = 183/678 (26%), Gaps = 41/678 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L+ ++   GL         +  +   P                   L     
Sbjct: 9   RNPVPALLLFILLTLAGLY-----GFRELPIANLPDLDLPTVT---------ISLTQPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +   + L        S+   Q  ITL F   +   +   +    +  
Sbjct: 55  APAQLETEVARKVENSLATLSGIKHMRTSITDGQVSITLEFILEKKLSDALIETKDAVDR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L VD ++  +        + +L      ++   A   S  +       +       
Sbjct: 115 IRSDLPVDLQQPSISAVRIGGEATLLYAIASSRMPEEA--LSWFVDDTVNKTVLGVPGVG 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +  Q+  E DP RL  L  T   +S           G    +     +     
Sbjct: 173 KFERVGGVQRQVRVEVDPVRLAALGATAVDVSRALKTVEQESSGGRGQLGGAEQAVRTIA 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    E+                      +       RR        +   +A      
Sbjct: 233 TVRQAEEL--------------------NRLPLVLSDGRRVNLDQVATVSDAIAERTQIA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +L    +                          L+A +  +    +    V         
Sbjct: 273 LLDGKPVVGFKIYRAKGFDETRIAAGVAQALGKLQAANPGLSFTKISG-TVDYTQEQFEG 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V++  +   +  L++  ++ L+++   A +  LG +L   ++  + 
Sbjct: 332 SMHMLYEGALLAVLVVWWFLRDWRATLISASALPLSILPAFAAMYWLGYSLNTLTLLALA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G+ VD  I+  E I   +R  + +  +     +     +  + +T ++  +      
Sbjct: 392 VIVGILVDDAIVEIENIERHSRMGKPIKQAAGEAVTEIALAVMATTMTLVVVFMPTAMMS 451

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      + F  T  +++L S+  A  +   +  ++++     +   +       +    
Sbjct: 452 GVPGLFFKQFGWTAVVAVLSSLLVARVLTPMLAAYLLKPHAGTTEAKDGALMTRYLGWVR 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                R R   V    +F   +  +            +G   + V       L+  R+  
Sbjct: 512 WCLAHR-RLTLVAAVAIFIGSAALVPLLKTGLIPPSDRGYSSVSVELPPGSSLAATRATT 570

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           E+ +      +  D     +   Q   G       V       +         Q      
Sbjct: 571 EAARRAMGPIKGIDHVMTMVGDAQAVGGGQTQAGEVRRATMTLVLAPRGERPSQADIETQ 630

Query: 659 PKISRELIRKGIVGVIIS 676
            + +   +      + + 
Sbjct: 631 VRRALINVPGARFSLGVG 648



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 75/249 (30%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            L +   R V+L  V +  +++                    + +  D       +    
Sbjct: 244 PLVLSDGRRVNLDQVATVSDAIAERTQIALLDGKPVVGFKIYRAKGFDETRIAAGVAQAL 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K+    P  +             +      +    + +A+L+  W    W   L + + 
Sbjct: 304 GKLQAANPGLSFTKISGTVDYTQEQFEGSMHMLYEGALLAVLVVWWFLRDWRATLISASA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I          G   N   + A+  ++G  V+D +V  + +    +        + 
Sbjct: 364 LPLSILPAFAAMYWLGYSLNTLTLLALAVIVGILVDDAIVEIENI---ERHSRMGKPIKQ 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
              +++ E     + T+M   +  +P A+  G        F       ++ +   +  + 
Sbjct: 421 AAGEAVTEIALAVMATTMTLVVVFMPTAMMSGVPGLFFKQFGWTAVVAVLSSLLVARVLT 480

Query: 817 APILLFIYD 825
             +  ++  
Sbjct: 481 PMLAAYLLK 489



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 67/166 (40%), Gaps = 6/166 (3%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++I  + +   + + F  ++  L  ++ + L +        L     ++ ++  ++ L
Sbjct: 848  MAIVIGLLCVFCVLVLLFHDFFQPLTILSAVPLSLGGAFVALLLSKGMLSIPSMIGLVML 907

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ +     + +    +S  + +  + ++     V T++A    +LP+A+ 
Sbjct: 908  MGIVTKNSILLVE--YAVVGIQERGLSLHEALIDACHKRARPIVMTTVAMIAGMLPIALG 965

Query: 789  WGGSV--IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G         AI +  G+V +   S+ +      ++     +  R
Sbjct: 966  LGADASFRQPMAIAVIGGLVTSTGLSLLVVPVAFTYVDGLERRVRR 1011


>gi|83312532|ref|YP_422796.1| cation/multidrug efflux pump [Magnetospirillum magneticum AMB-1]
 gi|82947373|dbj|BAE52237.1| Cation/multidrug efflux pump [Magnetospirillum magneticum AMB-1]
          Length = 1031

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/526 (13%), Positives = 148/526 (28%), Gaps = 38/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   +   G++        +  +   P                     L   
Sbjct: 11  RRPVATLLLAVGLFLTGMVA-----FDRLPVAPLPKVDFPTI---------AVSARLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     +        +  Q    IT+ F   R     A  V   +  
Sbjct: 57  DPATMAATVAAPLERRLGEIPGVAEMTSTSTQGSTSITVQFDLDRSINGAAHDVQAAINA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L VD              S +L    +      + +           +I   +   
Sbjct: 117 AASELAVDLPSPPTYRKINPAESPILI-LAVTSDSLTSAKVFDAADAILASRISQVDGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q   S      +    +P +L  +      +                             
Sbjct: 176 QVSLSGAEKPAVRVRVNPGQLASMGVGLEDVRTALA--------------------QANV 215

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN    T      +                ++   +     G 
Sbjct: 216 NTPKGFLDGATEAMSINANDQLFTASAYAPLIVKSSNGAIVRLSAVASVVDSVENTRLGG 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I S +   +   T++    +   LR          V         G+   
Sbjct: 276 WFNRDKGVLIIISKQPGANVVETVDRIKEILPQLRRWMPAGTKVSVVSDRTINIRGNLDD 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T AI  GLV++V+++ +      + A  ++ L++  T A + L G +L   S+  + 
Sbjct: 336 VETTLAISIGLVIMVVYLTLGRMTPTVAASVTVPLSLAATFAFMWLAGYSLNNISLMAVT 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I++ E I     K +    +   G      T+    ++ +   + L F G
Sbjct: 396 ISVGFVVDDAIVMIENITRHMEKGEGPLEAAIKGSKEIVFTVVSITLSLVAVFIPLLFMG 455

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              G   R FA+T+ ++I++S   ++++   +   ++   K + + 
Sbjct: 456 GILGRLFREFAVTLSVAIIVSAVVSLTVTPTLFGHLMVRAKPRPLS 501



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 82/225 (36%), Gaps = 12/225 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK----- 668
            ++  V +             ++ +K+ + ++           V    +  +        
Sbjct: 278 NRDKGVLIIISKQPGANVVETVDRIKEILPQLRRWMPAGTKVSVVSDRTINIRGNLDDVE 337

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
             + + I  + M++Y+ +  +    + A  T+ L +  T  F  L G   N  ++ AV  
Sbjct: 338 TTLAISIGLVIMVVYLTL-GRMTPTVAASVTVPLSLAATFAFMWLAGYSLNNISLMAVTI 396

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G+ V+D +V+ + +    +         +   K   E +   V  +++     +P+  
Sbjct: 397 SVGFVVDDAIVMIENI---TRHMEKGEGPLEAAIKGSKEIVFTVVSITLSLVAVFIPLLF 453

Query: 789 WG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G   G +   FA+ ++  I+V+A  S+ +   +   +       
Sbjct: 454 MGGILGRLFREFAVTLSVAIIVSAVVSLTVTPTLFGHLMVRAKPR 498



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 70/222 (31%), Gaps = 13/222 (5%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            V L  +     S     ++ Q           L        A  R+    ++       
Sbjct: 783 QVPLESLARFESSTAPVSVAHQGQFPAATLTFNLAPGVPLGDAAIRLQAAAREIGLPAGV 842

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--IT 705
                       K+  E +R   V +  + +A+ I + + ++       I + +    I 
Sbjct: 843 RWEFAGN----AKVFAESLRDQPVLIGAALLAIYIVLGVLYESLLHPITIISTLPSAGIG 898

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             L        E  L +V  V  L+G    + +++ D   +            + I ++ 
Sbjct: 899 ALLALMG-TNTELTLISVIGVFLLMGIVKKNGILMVDFAIE---AERRGAQPLEAILEAC 954

Query: 766 NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                  + T++ A +  +P+A+    GG++     I +  G
Sbjct: 955 RTRFRPILMTTLTALLGAVPLALASGPGGALRRPLGIAIVGG 996


>gi|258624014|ref|ZP_05718967.1| cation efflux system protein CusA [Vibrio mimicus VM603]
 gi|262174018|ref|ZP_06041695.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio mimicus MB-451]
 gi|258583808|gb|EEW08604.1| cation efflux system protein CusA [Vibrio mimicus VM603]
 gi|261891376|gb|EEY37363.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio mimicus MB-451]
          Length = 1041

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/591 (11%), Positives = 163/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++      + +D  P       I                  
Sbjct: 11  NNRFLVLIATLFLTLGGLYSVKM----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   E   +
Sbjct: 118 APKLPANAKPTLGPDATGVGWIYSYV-LQDKTGKHDLAQLRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 IATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    V +   + G         D    P         
Sbjct: 237 LTSIEDI------------------QSVPLKVTDKGTPLLLGDIADINIGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+      A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVEIVSTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLSEHKNPVNRGLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++     + +++     +       G  +      G  + +   
Sbjct: 519 RPLLNLSLKYPKSMIVLALGLMASAYYPTSQLGSEFIPPLDEGDLMYMPTT 569



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 71/250 (28%), Gaps = 16/250 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++  ++  D               +          T V E  K    ++V  +    T 
Sbjct: 792  ADVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGTYVQEAQKTVAEQLVLPAGYALTW 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FAL 713
                +       +  V V I+   +++ ++  F+       I    L +    G      
Sbjct: 852  SGQYEYMERAKERLSVVVPITLAIIMLLLYFSFR-RVGEVLIIMATLPLAMVGGLWLMHY 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR----------KNMKLYTTSISFRDLIDK 763
                 ++      + L G +V   V++   +           +      +     + I +
Sbjct: 911  LNYNLSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHYKKLDAEENHQPLSMKDLTEAIRE 970

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                 +   + T +   I ++P+      G  V+   A PM  G+  A   ++ +   I 
Sbjct: 971  GAGLRVRPVMMTVLTVIIGLIPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIF 1030

Query: 821  LFIYDWRAKN 830
                      
Sbjct: 1031 KLWKSKELPK 1040



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 71/217 (32%), Gaps = 13/217 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D+++       +   +   +   G                 + ++ E+ +     + 
Sbjct: 261 DIADINIGPQMRRGISEFNGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVE 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            +ST   + ++   +     +     ++++ +  L      F    +L    +L + I  
Sbjct: 321 IVSTYDRSTLINAAVENLWKKLAEEFIVVAIVCAL----FLFHIRSSLVIALSLPVGILS 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LI 761
                   GI  N+ ++  +   IG  V+  +V+     +N+  +       D     +I
Sbjct: 377 AFIVMHWQGINANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVI 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            K+  E      ++ +   +S +P+    G     F+
Sbjct: 433 GKAAEEVGAPLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|149185695|ref|ZP_01864011.1| RND family efflux transporter [Erythrobacter sp. SD-21]
 gi|148830915|gb|EDL49350.1| RND family efflux transporter [Erythrobacter sp. SD-21]
          Length = 1034

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 81/649 (12%), Positives = 185/649 (28%), Gaps = 47/649 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++  +I   GL            +   P+                    L   
Sbjct: 13  KRPLLVGVINLLIVIAGLAA-----FAGIEVRELPNVDRPIV---------SITASLPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  + +        S  +   +I   F      +  A  V   +  
Sbjct: 59  APETMDSEVTRVLEDAVARVTGVRQINSSSEENNTRIRAEFNAGVDLDTAASDVREAVSR 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    ++  +V        I++   + D       E +  +    I ++  +E   
Sbjct: 119 VTRDLPDRVEQVNIVKADADAQPIMVLAVSSD--RYGEAELTRVVENDVIPELLTAEGVA 176

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    +Q+    DP+RL +   T + ++              F             
Sbjct: 177 SIDQFGTRALQMRVSVDPARLNRFGLTMSDVASALERAPYDVPVGSFRSESQELVVRANA 236

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +   I  + + G T                               +    A   +  
Sbjct: 237 SATEPHLIREVIIAGTT------------------------RVGDVAEVTLAPADATNFV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    I       +A  +    I  A   +    A         V   +      S   
Sbjct: 273 RLDGRPIVGLGVVRQASSNTIE-ISNAIRASVDRVAARYQDLDVNVISDDADFIEISVRE 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A    +V+  + +     +  L+   +I + +I  LA + L+G ++ L ++  +V
Sbjct: 332 VLITLAFTILVVIGTMLLFFRAWRATLIPSTTIPVALIGVLAGIWLMGFSINLLTLLALV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E  +    +      +  +G  + +  +  +    +   + + F  
Sbjct: 392 LATGLIVDDAIVVLENTQRLRNRGLGRRAAAVVGTRQVFFAVIATTAVLVSVFLPISFLP 451

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAM---MIFIIRYKKMKSIDINPLSRFFLIP 535
              G   R F   + +++LIS F A+S+V A+               +            
Sbjct: 452 SQAGRLFREFGFVLSVAVLISSFVALSLVPALAAKFDLRSGDDGADRVTRFGAKLRKQYT 511

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +       R   V    + ++  +  L         + +G I++       V L  + 
Sbjct: 512 VLLGRCLDHGRIVVVTAIAMAAVTGLLYLQLDSELVPDEDRGVIEIDATGPDGVGLDFMD 571

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             L+ +++    + +    ++    +     + V  T  L    ++   
Sbjct: 572 RELDEIEVMLQPYLDSGEIQSTFSIVGRYDPNRVRVTAQLADWSERERS 620



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 63/177 (35%), Gaps = 9/177 (5%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                     +R+ ++ +  + + ++  + + F+ W   L   TT+ + +   L    L 
Sbjct: 319 SDDADFIEISVREVLITLAFTILVVIGTMLLFFRAWRATLIPSTTIPVALIGVLAGIWLM 378

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK-LYTTSISFRDLIDKSINETLGRSV 773
           G   NL  + A++   G  V+D +VV     +N + L    +  R        +     +
Sbjct: 379 GFSINLLTLLALVLATGLIVDDAIVVL----ENTQRLRNRGLGRRAAAVVGTRQVFFAVI 434

Query: 774 YTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            T+       LP++            F   ++  +++++  ++ +   +        
Sbjct: 435 ATTAVLVSVFLPISFLPSQAGRLFREFGFVLSVAVLISSFVALSLVPALAAKFDLRS 491



 Score = 42.8 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 7/162 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + + + +  +F+    AL  + T+   +   L    L G+  N+ +   ++ LIG 
Sbjct: 854  LFALVIVFLVLVAQFESLTSALVVLCTVPFALAAALFALFLSGVSLNIYSQIGLVMLIGL 913

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ +     ++    S+        +I   L     T ++  I  +P+ +    
Sbjct: 914  MAKNGILIVE-FADQLRHQGRSVREAAEEAAAIR--LRPIGMTLISTVIGAVPLILASGA 970

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G     S    +  G+ +A   ++F+   I L I  +    +
Sbjct: 971  GAEARQSIGWVIFGGLGIAGFFTLFLTPVIYLGIARFGQPRS 1012


>gi|213963064|ref|ZP_03391323.1| heavy metal efflux pump, CzcA family [Capnocytophaga sputigena
           Capno]
 gi|213954405|gb|EEB65728.1| heavy metal efflux pump, CzcA family [Capnocytophaga sputigena
           Capno]
          Length = 1443

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 77/682 (11%), Positives = 187/682 (27%), Gaps = 54/682 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  ++  +  M+   G+  A      +  +D  P                   + +   
Sbjct: 11  KNKLFVGFMTLMLIFWGVWSA-----TRLPIDAVPDITNN-------------QVQIITS 52

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +  ++       ++  + +          R   + IT  F++          V  
Sbjct: 53  TPTLASQEVEQLVTFPIEQAIANIPGLEETRSISRFGLSVITAVFSEDMDIYFARQLVNE 112

Query: 118 FLQGVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            L+    ++           + T   +    ++      +    A +           Q+
Sbjct: 113 KLKEAQEQIPQGIGSPELSPVSTGLGEVYQYIIRPTEQSKNKYSAKDLRTMQDWIVARQL 172

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             ++   +       L Q     DP RLR +  + + +       N +  G     R   
Sbjct: 173 YGTKGIAEINSFGGELKQYEVVIDPDRLRAMGVSVSDIFTALEQNNQNTGGAYIDKRPNA 232

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                  +     +I  I +   T     K    V   S    GA  +        G  +
Sbjct: 233 YFIRGIGMARSLEDIGNIAVGKHTPPLFIKHVAEVRLGSALRYGALSYNGEVDAVGGVVM 292

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +  +                    + +  +         ++       +          
Sbjct: 293 MLKGE--------------------NSHEVVSRIKEKLPTIQQSLPEDVVIEPFLDRTDL 332

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +    +      A +V+ +L + +   + GL+   +I L+++  L +++L G +  L
Sbjct: 333 VQRAIHTVEKNLLEGALIVIFILVLFLGNLRAGLIVATAIPLSLLFALGMMNLFGVSANL 392

Query: 415 PSIAGI--VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN----- 467
            S+  I   + +  +V     V   +       +     +D     + S I  S      
Sbjct: 393 MSLGAIDFGIIVDGSVIVVEAVMHHLAIRKNHQRLTQTQMDEEVFHSASKIRSSAAFGEI 452

Query: 468 --ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             +   I  + L    G   R  A T+  +IL ++  +++ + AM   ++          
Sbjct: 453 IILMVYIPILTLVGVEGKMFRPMAQTVVFAILGALILSLTYIPAMSALLLPKTVSDKRSF 512

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                 +L      +     R  G  I     +  + +     +      +      V  
Sbjct: 513 AERMISWLYRHYQPLFVRSIRLRGWIIGSTVVLFVLAVGIFSRMGGEFIPQLQEGDFVFE 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                 + ++ +LE+        + FD  K  + +       +         +   +   
Sbjct: 573 CILPPGTSLKQSLETSMQASRLIREFDEVKMVIGKTGSAEIPTDPMPLEASDIVIVLKSQ 632

Query: 646 VPLSTIQNTEIVGPKISRELIR 667
               + ++ E +G  I   L  
Sbjct: 633 DQWKSGRSYEELGDAIIERLKD 654



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 88/258 (34%), Gaps = 17/258 (6%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             + V    + S L    +      +  G    +++ +            L  +++ + E
Sbjct: 260 FIKHVAEVRLGSALRYGALSYNGEVDAVGGVVMMLKGENSHEVVSRIKEKLPTIQQSLPE 319

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
            V +    +   +  +    + +  +     + I + I +         L   T + L +
Sbjct: 320 DVVIEPFLDRTDLVQRAIHTVEKNLLE---GALIVIFILVLFLGNLRAGLIVATAIPLSL 376

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFR 758
              LG   LFG+  NL ++ A+    G  V+  V+V +       +RKN +  T +    
Sbjct: 377 LFALGMMNLFGVSANLMSLGAI--DFGIIVDGSVIVVEAVMHHLAIRKNHQRLTQTQMDE 434

Query: 759 DLIDKS----INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
           ++   +     +   G  +   +  +I +L +    G +    A  + F I+ A   S+ 
Sbjct: 435 EVFHSASKIRSSAAFGEIII--LMVYIPILTLVGVEGKMFRPMAQTVVFAILGALILSLT 492

Query: 815 IAAPILLFIYDWRAKNAR 832
               +   +      + R
Sbjct: 493 YIPAMSALLLPKTVSDKR 510



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/270 (15%), Positives = 92/270 (34%), Gaps = 12/270 (4%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
             +   G   +  +     +  V  S L +++      Q         + + +       Q
Sbjct: 774  SLHRTGIDDVQHMMVATENGQVPMSQLATIKYELGPAQVSREAGKRRIVIGFNVQGRDVQ 833

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            + V ++ +K     +P             + +   R  I   +   +   +         
Sbjct: 834  SVVSDIEQKLKGVKLPTGYYFTYGGQFENLQQATDRLLIAVPVALLLIFFLLYLAFHSIK 893

Query: 692  FALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             +L   + + +      G FAL   G+ F+++A    + L G +V + +V+      N  
Sbjct: 894  QSLLIFSAIPMS--AIGGVFALLLRGMPFSISAGIGFIALFGVAVLNGIVLIGTF--NQL 949

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                  +    +       L   + T+M A +  LPMA+    G  V    A  +  G+V
Sbjct: 950  KKEGMTNLLHRVITGTEMRLRPVLMTAMVASLGFLPMALSQGAGAEVQRPLATVVIGGLV 1009

Query: 807  VAASSSIFIAAPILLFI---YDWRAKNARI 833
             A   ++F+   + +     + WR  +A++
Sbjct: 1010 SATFLTLFVLPLLYIAFNSTFSWRRPSAKV 1039


>gi|304310939|ref|YP_003810537.1| Acriflavin resistance protein [gamma proteobacterium HdN1]
 gi|301796672|emb|CBL44884.1| Acriflavin resistance protein [gamma proteobacterium HdN1]
          Length = 1043

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/612 (9%), Positives = 162/612 (26%), Gaps = 43/612 (7%)

Query: 48  LDLRGGSHLVLEV-DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR 106
           LDL   + ++ +       +   +    ++  + L+       S+   +  IT  F   R
Sbjct: 40  LDLPMITVVLSQPGAAPTQLETEVARPVEDAMATLEGMRHLYTSINDGRVSITAQFDLER 99

Query: 107 FKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
                   V   +    + L  D  + ++          +L+   +          S   
Sbjct: 100 PVNEALQDVKDAVDRSRNDLPPDVLEPIVNKVNTGPGGTILT-YAVSHPSMDEEALSWFT 158

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
                                 +  ++    DP ++  L  T + +S           G 
Sbjct: 159 DDTIAHAALSVPGATGFTRIGGVTREVQITVDPVQMSALGVTASDISRALKRVQQDASGG 218

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
              +            V+   ++  + +  A   +        V  +  E       +  
Sbjct: 219 RGQLGGGEQGVRTIATVKRAQDLENLAIPMADGRYLQLNQVATVRDTIAERTQIALIDGK 278

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                +            A  ++                               P     
Sbjct: 279 PSVGFEISRTKGYDEKQIADGMSAV---------------------IAQLEQDHPGLKFE 317

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           +    V   L             A L +IV++  +   +  ++   ++ L++I    ++ 
Sbjct: 318 LVRSVVKVTLHQYRGSMQMLLEGAVLAVIVIWWFLRDWRATVLGAVALPLSIIPAFGVMY 377

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTI 463
           L   +L   ++ G+ + +G+ VD  ++  E I     + + V  +     +    A    
Sbjct: 378 LFDFSLNTITLLGLAVVVGILVDDAVVEVENIYRHINEGKPVKEATIEAVNEIALAVIAT 437

Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF---------- 513
             + +   + T ++    G   + F  T+  +++ S+  A  +   M ++          
Sbjct: 438 TAALVAVFLPTALMTGISGMVFKQFGWTVVAAVIASLMVARLVTPMMAVWMLKGGYQEPK 497

Query: 514 --IIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL-- 569
                   +K +      R   +  C A  F       +  +          +  +    
Sbjct: 498 DGWAMRSYLKILRWCLAHRKTTVAGCAAFFFGTLSLVPLMSTSFMPPEDYGFVIINMEMP 557

Query: 570 ---NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
              N          +    +    +  + +++ S +            +   + +     
Sbjct: 558 PGTNLETTAATAEMVRHSLDGIPGIESIFTSVGSFRANPNMPNGMGEVRKGTLNIVLTDR 617

Query: 627 DSVAQTRVLEMV 638
           D+    + +E +
Sbjct: 618 DTRPTQQEIEAM 629



 Score = 84.4 bits (206), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 82/248 (33%), Gaps = 6/248 (2%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +   R + L+ V +  +++                    + +  D       +  V  
Sbjct: 246 IPMADGRYLQLNQVATVRDTIAERTQIALIDGKPSVGFEISRTKGYDEKQIADGMSAVIA 305

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           ++ +  P    +    V      +      + +  + +A+++  W    W   +     L
Sbjct: 306 QLEQDHPGLKFELVRSVVKVTLHQYRGSMQMLLEGAVLAVIVIWWFLRDWRATVLGAVAL 365

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L I    G   LF    N   +  +  ++G  V+D VV  + +    +        ++ 
Sbjct: 366 PLSIIPAFGVMYLFDFSLNTITLLGLAVVVGILVDDAVVEVENI---YRHINEGKPVKEA 422

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             +++NE     + T+ A     LP A+     G V   F   +   ++ +   +  +  
Sbjct: 423 TIEAVNEIALAVIATTAALVAVFLPTALMTGISGMVFKQFGWTVVAAVIASLMVARLVTP 482

Query: 818 PILLFIYD 825
            + +++  
Sbjct: 483 MMAVWMLK 490



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 65/162 (40%), Gaps = 8/162 (4%)

Query: 671  VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++     +   + + F+ W+  +  ++ + + I            +  L     ++ L
Sbjct: 847  IALLTGIFLVYATLVLLFRDWFQPVTILSAIPMSIGGAFIAMVTLNYDLGLATFIGLIML 906

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G    + +++ D     M      ++  + +  + ++     V T++A    +LP+A +
Sbjct: 907  LGVVSKNSILLVD--FAVMAERDHGMTPMEAVLDACHKRARPIVMTTVAMIAGLLPLA-F 963

Query: 790  GGSVIGSF----AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G     +F    A+ +  G++ +   S+ +   + L+I   +
Sbjct: 964  GIGGKSAFRTPMAVAVIGGLITSTGLSLLVVPVVYLYIGRLK 1005


>gi|168214138|ref|ZP_02639763.1| protein-export membrane protein SecD [Clostridium perfringens CPE
           str. F4969]
 gi|168215567|ref|ZP_02641192.1| protein-export membrane protein SecD [Clostridium perfringens NCTC
           8239]
 gi|170714352|gb|EDT26534.1| protein-export membrane protein SecD [Clostridium perfringens CPE
           str. F4969]
 gi|182382321|gb|EDT79800.1| protein-export membrane protein SecD [Clostridium perfringens NCTC
           8239]
          Length = 419

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 31/170 (18%), Positives = 76/170 (44%), Gaps = 4/170 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           + E VG ++    +   +    I    + +++ + ++      A  +L + I   L  FA
Sbjct: 231 SVETVGAQLGANALPNAMKAGAIGVAIIFLFMILYYRVP-GFIACMSLSVYILLVLYIFA 289

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
           L G+   L  +AA L  +G +V+  V++++R+++ +       S    +    +  L   
Sbjct: 290 LVGVTLTLPGIAAFLLTVGMAVDANVLIFERIKEEL---GNGRSITSAMKIGFSNALRSI 346

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           + +++   I+ L +  +G   +  FA+ +  GIV++  ++I +    +  
Sbjct: 347 MDSNITTLIAGLVLYFFGSGPVKGFALTLLIGIVISMFTAIIMTRFFMNL 396



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 129/381 (33%), Positives = 216/381 (56%), Gaps = 26/381 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +   D V    +  + E++  R++++G+SE+ +   G++RI I +PG+ D   +   
Sbjct: 55  VLMEIQSDDVTVDQLNTTKELLSLRVNKVGVSETVVTTEGNNRIRIDIPGQYDSKTIVDS 114

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           L  T +++F                             E+ V ++G  +  ++   DP+T
Sbjct: 115 LQQTGELTF--------------------------VGPENDVILTGKDVEKSSVYIDPQT 148

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            KPV+ +  +E G ++F E T+   G+ +A+ +D   LT PV+N  I +G+A ISGN ++
Sbjct: 149 GKPVIKLELNEEGKQKFAEATKKYKGQKIAIKMDNETLTDPVVNDIISNGEAIISGNRSM 208

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  ++ ++ AG+LP+ +  V    VGA LG++++     A   G+ +I LFMI+ Y  
Sbjct: 209 EEAEKVSGIINAGALPVPVKAVSVETVGAQLGANALPNAMKAGAIGVAIIFLFMILYYRV 268

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G +A  S+ + ++L L + +L+G TLTLP IA  +L +G+AVD+N+L+ ERI+EE    
Sbjct: 269 PGFIACMSLSVYILLVLYIFALVGVTLTLPGIAAFLLTVGMAVDANVLIFERIKEELGNG 328

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  ++ +GFS A  +I DSNIT LIA +VL+FFG G V+GFA+T+ + I+ISMFTAI 
Sbjct: 329 RSITSAMKIGFSNALRSIMDSNITTLIAGLVLYFFGSGPVKGFALTLLIGIVISMFTAII 388

Query: 506 IVRAMMIFIIRYKKMKSIDIN 526
           + R  M        +    + 
Sbjct: 389 MTRFFMNLGFNMGILNKPSMF 409



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 42/142 (29%), Gaps = 2/142 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +     +   I    +            L  +        I+ GLDL+GG  +++E+
Sbjct: 1   MK-SKLGSFILFFISIAVISFLALAGFKGFTLGDYQFKTFNEVITKGLDLQGGVSVLMEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFL 119
             DD     L    + L   + K G+    +     N+I +        + I D +    
Sbjct: 60  QSDDVTVDQLNTTKELLSLRVNKVGVSETVVTTEGNNRIRIDIPGQYDSKTIVDSLQQTG 119

Query: 120 QGVNSKLNVDPKKNLLVTTTEK 141
           +        D            
Sbjct: 120 ELTFVGPENDVILTGKDVEKSS 141


>gi|258620158|ref|ZP_05715197.1| cation efflux system protein CusA [Vibrio mimicus VM573]
 gi|258587516|gb|EEW12226.1| cation efflux system protein CusA [Vibrio mimicus VM573]
          Length = 1041

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/591 (11%), Positives = 163/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++      + +D  P       I                  
Sbjct: 11  NNRFLVLIATLFLTLGGLYSVKM----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   E   +
Sbjct: 118 APKLPANAKPTLGPDATGVGWIYSYV-LQDKTGKHDLAQLRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 IATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    V +   + G         D    P         
Sbjct: 237 LTSIEDI------------------QSVPLKVTDKGTPLLLGDIADINIGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+      A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVEIVSTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLSEHKNPVNRGLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++     + +++     +       G  +      G  + +   
Sbjct: 519 RPLLNLSLKYPKSMIVLALGLMASAYYPTSQLGSEFIPPLDEGDLMYMPTT 569



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/250 (11%), Positives = 71/250 (28%), Gaps = 16/250 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++  ++  D               +          T V E  +    ++V  +    T 
Sbjct: 792  ADVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGTYVQEAQQTVAEQLVLPAGYALTW 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FAL 713
                +       +  V V I+   +++ ++  F+       I    L +    G      
Sbjct: 852  SGQYEYMERAKERLSVVVPITLAIIMLLLYFSFR-RVGEVLIIMATLPLAMVGGLWLMHY 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR----------KNMKLYTTSISFRDLIDK 763
                 ++      + L G +V   V++   +           +      +     + I +
Sbjct: 911  LNYNLSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHYKKLDAEENHQPLSMKDLTEAIRE 970

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                 +   + T +   I ++P+      G  V+   A PM  G+  A   ++ +   I 
Sbjct: 971  GAGLRVRPVMMTVLTVIIGLIPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIF 1030

Query: 821  LFIYDWRAKN 830
                      
Sbjct: 1031 KLWKSKELPK 1040



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 71/217 (32%), Gaps = 13/217 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D+++       +   +   +   G                 + ++ E+ +     + 
Sbjct: 261 DIADINIGPQMRRGISEFNGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVE 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            +ST   + ++   +     +     ++++ +  L      F    +L    +L + I  
Sbjct: 321 IVSTYDRSTLINAAVENLWKKLAEEFIVVAIVCAL----FLFHIRSSLVIALSLPVGILS 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LI 761
                   GI  N+ ++  +   IG  V+  +V+     +N+  +       D     +I
Sbjct: 377 AFIVMHWQGINANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVI 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            K+  E      ++ +   +S +P+    G     F+
Sbjct: 433 GKAAEEVGAPLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|223983991|ref|ZP_03634149.1| hypothetical protein HOLDEFILI_01439 [Holdemania filiformis DSM
           12042]
 gi|223964067|gb|EEF68421.1| hypothetical protein HOLDEFILI_01439 [Holdemania filiformis DSM
           12042]
          Length = 1330

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/832 (8%), Positives = 206/832 (24%), Gaps = 41/832 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++   M   +G++  + +          P  +               +      
Sbjct: 8   KKPYTVIVGVVMCLLLGVISFMNSTTDLLPEMELPYVV--------------IYSTYPGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   L    +   S  +             + I L FAD    +     +   +  
Sbjct: 54  SAEKVETSLTRILESSVSTTENLSNMSSISSDNLSLIILEFADDTNMDTAMLDLNAKIDL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L+       L+      + I++     D         S  +  + + ++  ++   
Sbjct: 114 VKGYLDETISSPTLMAINPNMMPIMM--ATADYDGHDLQGLSDFVNEKVVPELEKTKGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +  +   +    D  ++  +           V    +K       +    +DG Q 
Sbjct: 172 SVDPTGLLEETVQIVLDHDKIDAINNKVLDS----VDSELAKTERELREKLQEVNDGLQK 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           + + + E++                      +   M ++                     
Sbjct: 228 ITDGESELTSTKNETYDKLAQSSVQLQQAATNLIAMDSQITQLKAEKAA----------- 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                +++                    I        ++ +     +       L ++  
Sbjct: 277 --FEQIVSGVDQLRTQVPDNPDATNEELIEYLESLPATITMLTQSKDALANYQILINEIS 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI--LTLALLSLLGATLTLPSIAG 419
              + A       I   +         + ++      +      +   L     L S   
Sbjct: 335 DDTSLADQPLPEEITFILSKFKVDLTKITNYGEVKAALSGAVATIDQALTPLNALSSNLD 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +  +    D   +    +  E    + V  +     ++A   + D N            
Sbjct: 395 AMKEMVGKYDDAKVKLSNVEIEIATAEGVKQAASSMLTKAGIDVSDLNSLQSKLESGKLT 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G   +G          +            +  I   +       N             
Sbjct: 455 AAGEITKGEMTISTTKTTLESAKTQIEDG--LKQIADARDEALKKANISEALSPSMISTM 512

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           +           I+       I +         ++    + + +     V L  + S   
Sbjct: 513 LTAENFSMPAGYIASNDDSLLIKVGDQFASLEEVENLLLMSMEIDGLEEVRLKDLASVQI 572

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                 +  +        L   +     +    + L     K+               G 
Sbjct: 573 VNNSEKLYTRVNGNPGIMLSFQKSSTASTADVCKALHKTFDKLGTQYEGLHFSTLMDQGV 632

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
            I   +       +  + +A+++ I         +    ++ + +   +      G+  N
Sbjct: 633 YIDMIVNSVLENFLYGAILAIIVLILFLRDLKPTVIIALSIPISLMFAMVLMYFSGVTLN 692

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           + +++ +   +G  V++ VVV + +    ++    +   D   +   +  G  + +++  
Sbjct: 693 IISLSGLALGVGMLVDNSVVVIENI---YRMRNEGVGLIDAAIEGAKQVAGAIIASTLTT 749

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               LP+ V+   +     + M   I  +  +S+ +A  ++  +     K  
Sbjct: 750 VCVFLPI-VFATGLARQLFVDMGLTIAYSLLASLIVALTLVPMLASKMLKKQ 800



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 92/240 (38%), Gaps = 10/240 (4%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            +  ++ G      +       V +     +    + V   V+K++       ++      
Sbjct: 1088 IADIENGTGMNSIYRENSRRFVNVSGTIKEGYNVSLVTRDVQKQLDTSGLPESVSLEFSG 1147

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--G 715
              +   E +   I  ++++   + + +  +F+   +   I    + +  T GF  L   G
Sbjct: 1148 ENETIMETMVTMIQMILLAIAFIYMIMVAQFQSLLSPF-IVMFTIPLAFTGGFLGLLITG 1206

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             E ++ A+   L L G  VN+ +V  D      +L     + R+ I ++    L   + T
Sbjct: 1207 QELSIVAMLGFLVLCGVVVNNGIVFID---YANQLKERGYATREAIIETGRTRLRPILMT 1263

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++   +++  MA+    G  ++   AI    G+  +   ++F+  PI++ +   R    +
Sbjct: 1264 ALTTILAMTTMALGIGTGSDMMQGMAIVTIGGLTYSTVLTLFVV-PIMIEVTSRRKDRKK 1322


>gi|46203817|ref|ZP_00050941.2| COG0841: Cation/multidrug efflux pump [Magnetospirillum
           magnetotacticum MS-1]
          Length = 529

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 70/554 (12%), Positives = 169/554 (30%), Gaps = 25/554 (4%)

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +   +  + ++  + ++       ++ +  +  T+ F      +   + V   +  +   
Sbjct: 1   MQTQVTKWVEDSIAGVRGVKHITSAITEGSSVTTVEFRLEVNTDRAVNDVKDAISKIRIN 60

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
           L     + ++       + I++       +     + S  +  +    +   +       
Sbjct: 61  LPRTIDEPIIQRVEITGLPILIYGVTSPAMTPA--DLSWFVEDKVARTLQGVKGVGGVER 118

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
              +  ++     P RL  L  T A+++    + +    G    V     S         
Sbjct: 119 VGGVSREIRITPLPDRLLALGITAAEVNKQVRVTSADMAGGRGEVGGREQSIRTLAASRT 178

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
             ++    +                       G R+        +   +           
Sbjct: 179 IRDLKATSIVLP--------------------GGRKVRLDDLATVEDSIEEPRTFARFNG 218

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
             +     S  +  S            A        I+   ++  +V A  GS +    T
Sbjct: 219 APVVAFAVSRGSGASDAEVAAGVEKKIAEFSESYPDIRFEEIDS-SVLATRGSYASAMHT 277

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
               A L +IV+F+ +   +  ++A  ++ L+V  T   +  LG TL   S+  I L  G
Sbjct: 278 LMEGAALAVIVVFLFLRDWRATMIAAVALPLSVFPTFWAMDALGFTLNGISLLAITLVTG 337

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
           + VD  I+  E +    R  +S + +   G       +     T +     + F GG A 
Sbjct: 338 ILVDDAIVEIENVVRHMRLGKSPYRASIEGADEIGLAVIAITATLIAVFAPVSFMGGIAG 397

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           R F    GL+I +S+F ++ + R +   +  Y  ++           ++     +     
Sbjct: 398 RYFMQ-FGLTIAVSVFMSLLVARLITPLLAAY-FLRDHGHAEEKEGPVMRAYTRLVGWSV 455

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           R   + + +  ++ +  ++ T  L  G   K      +        + +   +       
Sbjct: 456 RHKWITLVVGLALFAGSIMSTKLLPSGFIPKQDNARTLFMIELAPGARLADTIAVSDRVS 515

Query: 606 ISFQNFDGEKNFLV 619
            +      + + L 
Sbjct: 516 PASGASGSQDDNLW 529



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 75/249 (30%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +   R V L  + +  +S++      +            +            +E   
Sbjct: 186 SIVLPGGRKVRLDDLATVEDSIEEPRTFARFNGAPVVAFAVSRGSGASDAEVAAGVEKKI 245

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + +E  P    +  +                 +  +A+A+++       W   + A   
Sbjct: 246 AEFSESYPDIRFEEIDSSVLATRGSYASAMHTLMEGAALAVIVVFLFLRDWRATMIAAVA 305

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T       G   N  ++ A+  + G  V+D +V  + +   ++      S   
Sbjct: 306 LPLSVFPTFWAMDALGFTLNGISLLAITLVTGILVDDAIVEIENV---VRHMRLGKSPYR 362

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIA 816
              +  +E     +  +        P++  GG        F + +A  + ++   +  I 
Sbjct: 363 ASIEGADEIGLAVIAITATLIAVFAPVSFMGGIAGRYFMQFGLTIAVSVFMSLLVARLIT 422

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 423 PLLAAYFLR 431


>gi|240141847|ref|YP_002966355.1| Heavy metal efflux pump, CzcA family [Methylobacterium extorquens
           AM1]
 gi|240011789|gb|ACS43014.1| Heavy metal efflux pump, CzcA family [Methylobacterium extorquens
           AM1]
          Length = 1048

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 75/609 (12%), Positives = 175/609 (28%), Gaps = 51/609 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   ++ + S++   G          +  +D FP                   ++ E 
Sbjct: 10  LKNRLLVLAIASVLVLFGAFTV-----TKLPVDVFPDLNRPT-----------VTIMTEA 53

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           +      V   +    +   + L              + + + F           ++   
Sbjct: 54  EGYAPPEVEQLVTYPIETRMNGLPGVSRVRSVSGVGLSIVYVEFDWGTDIYRNRQQIAER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L  V  +L       +   ++     ++++  +         E +  +IR    ++    
Sbjct: 114 LSLVQDQLPRGVTPVMGPISSIMGQILLVAVTSETATPMQVREAADFVIR---PRLLTIP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q +     + Q     +P+ +R L  T A++         +  G             
Sbjct: 171 GVAQVIPIGGEVRQFRVAPNPAAMRTLGVTNAQLEASLQQFGTNAGGGFTDQNAREYLIR 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           N     D  ++  + +               V            ++     I        
Sbjct: 231 NIARTLDLDDLRNVVVTTVNNTPVYLRQIAEVSFGARVKRGDAGYQGKPAVIVSVEKQPD 290

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              V     I QA                   L  + +     IK + +  R       S
Sbjct: 291 VDTVKLTGQIQQA-------------------LGEITQTLPDGIKADQILFRQANFIETS 331

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            S  +        +V  VLF+ +L  +   ++  +I ++++ T  +  L G ++   ++ 
Sbjct: 332 ISNVERVLLEAIVVVAAVLFLFLLNVRTTAISLLAIPVSILTTAVVFHLFGLSINTMTLG 391

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALI 472
           G+ + IG  VD  ++  E I     +N+      SVF  +    +   S I  + +  ++
Sbjct: 392 GLAIAIGELVDDAVVDVENIFRRLGENRKAGNPKSVFQVVVEASNEVRSGIVYATMIIIL 451

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR--YKKMKSIDINP 527
             V LF      G           +SIL S+ T+I++   +  +++       +      
Sbjct: 452 VFVPLFALSGIEGRLFAPLGQAYIISILASLVTSITLTPVLASWLLPGLKNLEEHDSRFL 511

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +   F   R     +++      +              +G   + +  N 
Sbjct: 512 KLLKRGNAALLRGAFRHQRLLVGMVAVAVLGAGVAAWQLPRAFLPPFNEGSFTVNMTFNP 571

Query: 588 PVDLSVVRS 596
            + L+    
Sbjct: 572 GISLAESNR 580



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 11/210 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +         Q  + E+ +     I     +             + R  +  +++ A  +
Sbjct: 291 VDTVKLTGQIQQALGEITQTLPDGIKADQILFRQANFIETSISNVERVLLEAIVVVAAVL 350

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++           ++  + + I  T   F LFG+  N   +  +   IG  V+D VV 
Sbjct: 351 FLFLL---NVRTTAISLLAIPVSILTTAVVFHLFGLSINTMTLGGLAIAIGELVDDAVVD 407

Query: 740 ---VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
              ++ R+ +N +      S   ++ ++ NE     VY +M   +  +P+    G     
Sbjct: 408 VENIFRRLGEN-RKAGNPKSVFQVVVEASNEVRSGIVYATMIIILVFVPLFALSGIEGRL 466

Query: 797 FAI---PMAFGIVVAASSSIFIAAPILLFI 823
           FA         I+ +  +SI +   +  ++
Sbjct: 467 FAPLGQAYIISILASLVTSITLTPVLASWL 496


>gi|312961796|ref|ZP_07776294.1| AcrB/AcrD/AcrF family protein [Pseudomonas fluorescens WH6]
 gi|311284055|gb|EFQ62638.1| AcrB/AcrD/AcrF family protein [Pseudomonas fluorescens WH6]
          Length = 1073

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 71/562 (12%), Positives = 159/562 (28%), Gaps = 45/562 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     ++L   IC +G + AL     ++  D FP                   +V + 
Sbjct: 9   LQKPYTFIVLAIFICIVGPMAAL-----RTPTDVFPDIGIPV-----------VAVVWQY 52

Query: 61  DE--DDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +    D + G +    +  L + +                + + F           +VT 
Sbjct: 53  NGLSPDAMAGRVIYTYERSLSTTVNDIEHIESQSLPGMGIVKIFFQPGVDIRTANAQVTA 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q V  ++       L++  +   + I+    +   +     +    +       +   
Sbjct: 113 VSQTVLKQMPPGITPPLILNYSASTVPILQMAFSSPSLSEA--KIRDLVQNNIRLPLSAL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                         Q+  + DP  L     +   +     L N         +     + 
Sbjct: 171 PGLAMPTPMGGKQRQITLDLDPQALAAKGLSAQDVGNALALQNQIIPVGTAKLGPNEYTI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +   E+                     D+    +           ++       
Sbjct: 231 LLNNSPKAIDEL--------------------NDLPIKTVDGALITIGQVAHVRDGSPPQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +               IS    I+    +   +     P     +          
Sbjct: 271 TNIVRVDGHRAVLMPALKNGSISTLSIIDGIRQMLPRIDETLPPSLKTSLLGDASVFVKQ 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S         I A L   ++ + +   +  L+   SI L V+  +ALL+  G TL + ++
Sbjct: 331 SVGSVAQEGIIAALLTSAMILLFLGSWRSTLIIAASIPLAVLSAIALLAATGQTLNVMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     + ++V  ++  G ++     F S +   I  V +
Sbjct: 391 GGLALAVGILVDDATVTIENINWHLEQGKAVETAILDGAAQIVGPAFVSLLCICIVFVPM 450

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G   R  A+ +  ++  S   + ++V  + +F+     +             I
Sbjct: 451 FLLQGIAGYLFRPMALAVIFAMASSFVLSRTLVPTLAMFL-LKPHIPEQGAGHHPEDAFI 509

Query: 535 PDCIAIQFMRARFWGVGISILF 556
                 Q  + R   +   + F
Sbjct: 510 NHHEGEQHNKPRNPALQAVLNF 531



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 80/203 (39%), Gaps = 9/203 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               ++L  + + +   +  S + +  +   +    + ++GI+  ++++  +L+++    
Sbjct: 299 DGIRQMLPRIDETLPPSLKTSLLGDASVFVKQSVGSVAQEGIIAALLTSAMILLFLG--- 355

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    ++ L +   +   A  G   N+  +  +   +G  V+D  V  + +    
Sbjct: 356 SWRSTLIIAASIPLAVLSAIALLAATGQTLNVMTLGGLALAVGILVDDATVTIENIN--- 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI-PMAFGIVV 807
                  +    I     + +G +  + +   I  +PM +  G  I  +   PMA  ++ 
Sbjct: 413 WHLEQGKAVETAILDGAAQIVGPAFVSLLCICIVFVPMFLLQG--IAGYLFRPMALAVIF 470

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           A +SS  ++  ++  +  +  K 
Sbjct: 471 AMASSFVLSRTLVPTLAMFLLKP 493



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 62/162 (38%), Gaps = 5/162 (3%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +G++ + + + + I + F  W      IT L   +   +    L G   ++ A+   +  
Sbjct: 907  LGLLGAVVLIYLLIVVNFQSWVDPFVIITALPAALAGIVWMLFLSGTSLSVPALTGAILC 966

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + ++V    R+  +L     + +  ++            T++A  I +LP+A+ 
Sbjct: 967  MGVATANSILVVSFCRE--RLAEHGDALKAALEAGYTR-FRPVCMTALAMIIGMLPLALS 1023

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                       +  G++ A  +++     +   ++      A
Sbjct: 1024 EEQN-APLGRAVIGGLIFATVATLLFVPVVFSLVHGRHPTRA 1064


>gi|260902938|ref|ZP_05911333.1| heavy metal efflux pump, CzcA family [Vibrio parahaemolyticus
           AQ4037]
 gi|308107843|gb|EFO45383.1| heavy metal efflux pump, CzcA family [Vibrio parahaemolyticus
           AQ4037]
 gi|328470293|gb|EGF41204.1| putative cation efflux system transmembrane protein [Vibrio
           parahaemolyticus 10329]
          Length = 1046

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/529 (12%), Positives = 148/529 (27%), Gaps = 39/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN ++V++ +++  +  L ++ N    + +D  P       I                  
Sbjct: 11  NNRFMVLIATLMLVLAGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL    K  L    T                     E           ++   +   +
Sbjct: 118 APKLPPSAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVVEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P        +
Sbjct: 237 LTSIEDIK------------------SLPLKVTDKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I         L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRYGENASEVISKVKDKLEDLQRSLPDGVEIVTTYDRSTLINAAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILAAFIVMHSQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                 G      A T   ++  +   AI++V  +M + IR K +    
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMASAAALAITLVPVLMGYFIRGKILPEHK 507



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 76/291 (26%), Gaps = 22/291 (7%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  + +                 +    L       V++
Sbjct: 816  WVFVDIDGRDLGSYVVEAQQAVADQLVLPAGYSLAWSGQYEYMERAKDRL------SVVV 869

Query: 676  SAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGY 732
                ++I + + F +       I  L L +    G          F++      + L G 
Sbjct: 870  PITLVIIMMLLYFSFRRVGEVLIIMLTLPLAMVGGLWLMHYLNYNFSIAVGVGFIALAGV 929

Query: 733  SVNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
            +V   V++   +           +  +         D I +     +   + T +   I 
Sbjct: 930  AVEIGVIMLVYLNQAWHHKKLHAEENQQALQIGDLTDAIREGAGLRVRPVMMTVLTVIIG 989

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++P+      G  V+   A PM  G+  A   ++ +   I           
Sbjct: 990  LIPIMYGSGTGSQVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQREVNK 1040



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++   + +   +P      T  
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRYGENASEVISKVKDKLEDLQRSLPDGVEIVTTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLINAAVDNLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILAAFIVMHSQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|117925799|ref|YP_866416.1| acriflavin resistance protein [Magnetococcus sp. MC-1]
 gi|117609555|gb|ABK45010.1| acriflavin resistance protein [Magnetococcus sp. MC-1]
          Length = 1033

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/536 (11%), Positives = 144/536 (26%), Gaps = 37/536 (6%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           ++  + +LIA  +       +  P       I           +  E    +     L  
Sbjct: 16  LLVFLFVLIAGASSYVTIPKESDPDVKIPIII---------VSVGYEGISPEDGERLLIK 66

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
             ++    L                +TL+F      +N   KV   +     ++  +  +
Sbjct: 67  PLEKALRGLDGLKEMDAVAAVGTVSVTLTFEAGFDADNALRKVRQKVDDARPEMPSESDE 126

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            ++         ++    +         + +    R   D+I      ++          
Sbjct: 127 PVVQEINVALFPVITVALSGQVDPLALRKMA----RDLKDRIEAVSGVLEVDIGGDREEM 182

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
           +    DP  L  L  + A++       N      +      R S     LVE   ++   
Sbjct: 183 VEILVDPVLLETLNISFAEVVQLVTRNNRLVPAGVIDTGLGRMSIKAPGLVEGVADL--- 239

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                            + +     G           + + L        +         
Sbjct: 240 -----------------LAMPVKVSGDTVVTFDQVATVRRTLKDPEGFARMDGNPTLTLE 282

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              +   +    +     +    + G                        +        L
Sbjct: 283 VKKRLGANILDMVAEVKQVVKQTQQGWTLPVTVGFSNDQSTRIQDMLGDLENNVLAAIVL 342

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           V+IV+   +      ++   +I    +  +  L LLG T+ +  +  ++L +G+ VD  I
Sbjct: 343 VMIVVVGALGGR-AAVLVGLAIPGAFLAAILALDLLGVTINIVVLFSLILVVGMLVDGAI 401

Query: 433 LVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFA 489
           +V E+ ++     +    +      R    +  S +T L   + L F+    G  ++   
Sbjct: 402 VVVEQAQQRRGWGEPGLLAFQNAAKRMAWPVISSTVTTLAVFMPLMFWPGVIGQFMKYLP 461

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           +T+ L++  S+  A+  +  +   +               R +       +     
Sbjct: 462 MTVLLALSASLAMALIFMPVLGGLVSHRAPSPDNQGGWGGRLYGRLLATLLPHPGK 517



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 88/254 (34%), Gaps = 4/254 (1%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G+     + + V  +  V    V +   +L+  +   +        L   +    + +  
Sbjct: 235 GVADLLAMPVKVSGDTVVTFDQVATVRRTLKDPEGFARMDGNPTLTLEVKKRLGANILDM 294

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              ++ V K+  +   L              ++++      V+ + + ++I +       
Sbjct: 295 VAEVKQVVKQTQQGWTLPVTVGFSNDQSTRIQDMLGDLENNVLAAIVLVMIVVVGALGGR 354

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            A+     +       +    L G+  N+  + +++ ++G  V+  +VV +   +  +  
Sbjct: 355 AAVLVGLAIPGAFLAAILALDLLGVTINIVVLFSLILVVGMLVDGAIVVVE---QAQQRR 411

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
                       +        + +++      +P+  W G VIG F   +   +++A S+
Sbjct: 412 GWGEPGLLAFQNAAKRMAWPVISSTVTTLAVFMPLMFWPG-VIGQFMKYLPMTVLLALSA 470

Query: 812 SIFIAAPILLFIYD 825
           S+ +A   +  +  
Sbjct: 471 SLAMALIFMPVLGG 484


>gi|119718461|ref|YP_925426.1| MMPL domain-containing protein [Nocardioides sp. JS614]
 gi|119539122|gb|ABL83739.1| MMPL domain protein [Nocardioides sp. JS614]
          Length = 842

 Score =  131 bits (328), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 65/514 (12%), Positives = 155/514 (30%), Gaps = 73/514 (14%)

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS---IAGIVLGIGLAVDSNILVNER 437
                  LV   +  L + L + ++ LL   +T+ +   +   ++G+G+ +D  +LV  R
Sbjct: 188 FGSVFAMLVPLLTAVLALGLGMGIIFLLSDQVTIGTAGPVVAAMIGLGVGIDYALLVVTR 247

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
            RE      S   S+ +  S A  ++  +  T +IA + L+  G   V    +   +++ 
Sbjct: 248 HREGLATGHSARESIPIALSTAGRSVLVAGTTVIIAILSLYAIGIPFVATLGLASAITVA 307

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF-LIPDCIAIQFMRARFWGVGI---- 552
            +M  A++++ A++           +    L      +           R     +    
Sbjct: 308 TTMLAAVTLLPALLAVFGDQLDRLRVRRPRLDHGGGRVSGWHRWTRHVQRRPWPYLLAAV 367

Query: 553 ---------------------SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                                S                ++G  + G + +          
Sbjct: 368 AVLATLAIPLLDLRLGTADDGSAPVGSTERAAYDLIATDFGPGWTGPLVVTASYPDGTAA 427

Query: 592 SVVRSN---------LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
              RS          +E ++       N  G+   L  +     D  A   ++  ++ ++
Sbjct: 428 ETQRSAKALAGEIAGVEGVEQVSPPAVNEAGDTAVLTVVPSTSPDDQATEDLVHRLRDQV 487

Query: 643 TEIV--------------PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                             P   +         ++ +L  +    +        + + + F
Sbjct: 488 GRDGAADDTRAQPQARPEPEVHVGGATATNIDLADKLTDRMPWFMAFVVGLSFLLLLVEF 547

Query: 689 KWYF-ALGAITTLILDITKTLG-FFALFGIEF-------------NLTAVAAVLTLIGYS 733
           +  F  + A    +L +    G   A+F   +             +   +     L G S
Sbjct: 548 RSIFVPVKAALMNLLSVGAAYGAVVAIFQWGWLSDVFGAQPGPIESFAPMMLFAVLFGLS 607

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
           ++ +V +  R+R+    Y  +      +   I  T  R +  + +  + V    +     
Sbjct: 608 MDYEVFLLSRVREE---YLRTGQAGAAVADGIAAT-ARVITAAASVMVVVFASFLLNDDR 663

Query: 793 VIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYD 825
           V+  F   +A  I +      + +   ++     
Sbjct: 664 VVNLFGFGLAVAIAIDATLVRLVLVPALMAVAGR 697



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 58/154 (37%), Gaps = 11/154 (7%)

Query: 688 FKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTA---VAAVLTLIGYSVNDKVVVYDR 743
           F   FA L  + T +L +   +G   L   +  +     V A +  +G  ++  ++V  R
Sbjct: 188 FGSVFAMLVPLLTAVLALGLGMGIIFLLSDQVTIGTAGPVVAAMIGLGVGIDYALLVVTR 247

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
            R+ +    T  S R+ I  +++      +       I++L +   G   + +  +  A 
Sbjct: 248 HREGLA---TGHSARESIPIALSTAGRSVLVAGTTVIIAILSLYAIGIPFVATLGLASAI 304

Query: 804 GIVVAASSSIFIAAPILLFIY----DWRAKNARI 833
            +     +++ +   +L          R +  R+
Sbjct: 305 TVATTMLAAVTLLPALLAVFGDQLDRLRVRRPRL 338


>gi|311746823|ref|ZP_07720608.1| efflux transporter, AcrB/AcrD/AcrF family, inner membrane component
           [Algoriphagus sp. PR1]
 gi|311302576|gb|EAZ82669.2| efflux transporter, AcrB/AcrD/AcrF family, inner membrane component
           [Algoriphagus sp. PR1]
          Length = 1052

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 78/695 (11%), Positives = 189/695 (27%), Gaps = 53/695 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +  +V+L++++  +G+         Q   +  P                    V    
Sbjct: 9   QRSTMVVVLFTVLTLLGIFS-----YTQLSYELLPKMEANVVT---------ISTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  + L+         ++  + IT+     +  +    +    +  
Sbjct: 55  APSEVETSVTKKIEDAVASLEGIKSMNSISQESISIITIEIEAGQNVDVSLQEAQRKINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D     L      ++ I+      D   S   +    +  +    +       
Sbjct: 115 ILGDLPEDADPPSLGKFDLDDLPIMQMAVYSDLNPSQFYDL---VKNKIQPSLSKISGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D ++L     +   ++      N                     
Sbjct: 172 QVNMLGGTEREIKVNLDRNKLEAYGISPITVAQVINASNLDFPTGRLKN----------- 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       +    A       +    I                 +           
Sbjct: 221 --------EDSQILIRLAGKFSSVEQIENLIIAYRDDQSPIQLKEVAEVQDDFKDEEILT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L            ++  +     E     L  +    +       + +      L + +
Sbjct: 273 RLNGKAAIGLTVQKQSDANAVEVSEVIEHELHLLETTYNAEGVSFEISQNTSEFTLEAAN 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I   LV +++ + +   +  ++   ++  ++I T  ++ L G TL L S+  +
Sbjct: 333 DVIKDLGIAILLVALIMLLFLHSIRNAVIVMIAVPASIIATFTVMYLAGFTLNLMSLLAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  I+V E I       +S+  +   G     ST+    +  ++  V L   
Sbjct: 393 SLVVGILVDDAIVVIENIYRHLEMGKSIAQASYDGIREIGSTVVSITLVIVVVFVPLAMT 452

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF------ 531
           GG   G +  F+IT+  + +IS+  A +++  +     + + +          +      
Sbjct: 453 GGLIAGIITQFSITVATATMISLLVAFTLIPLLTSRFSKLEHLSKDSFFGKIIYGFESFL 512

Query: 532 -FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK-----GGIQLGVLA 585
              +   ++I         V + I F +     L       G +F      G   + +  
Sbjct: 513 DGFVDWLVSILRWGFAHKLVLMGITFVLFVSSFLLVGNGFIGSEFVSQGDRGEFLIRLEL 572

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +   L         ++    +          +     Q   S +     E+  K + + 
Sbjct: 573 PKDATLEQTNFKTREVEDYLRTLPEVTEVFTTVGVSSGQYTGSQSSPFTSEISVKLVGKE 632

Query: 646 VPLSTIQNTEIVGPKISRELIRKG-IVGVIISAIA 679
               +  +          E I       V IS + 
Sbjct: 633 NRSLSGPDYARNVENYLEENITGAEYTAVPISIMG 667



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 83/252 (32%), Gaps = 9/252 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +          ++   E                   + L  Q         V E+++ ++
Sbjct: 244 IAYRDDQSPIQLKEVAEVQDDFKDEEILTRLNGKAAIGLTVQKQSDANAVEVSEVIEHEL 303

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG----IVGVIISAIAM-LIYIWIRFKWYFALGAI 697
             +      +       + + E   +     I  + I+ + + LI +        A+  +
Sbjct: 304 HLLETTYNAEGVSFEISQNTSEFTLEAANDVIKDLGIAILLVALIMLLFLHSIRNAVIVM 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +   I  T     L G   NL ++ A+  ++G  V+D +VV + +    +      S 
Sbjct: 364 IAVPASIIATFTVMYLAGFTLNLMSLLALSLVVGILVDDAIVVIENI---YRHLEMGKSI 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
                  I E     V  ++   +  +P+A+ GG +I       +  +  A   S+ +A 
Sbjct: 421 AQASYDGIREIGSTVVSITLVIVVVFVPLAMTGG-LIAGIITQFSITVATATMISLLVAF 479

Query: 818 PILLFIYDWRAK 829
            ++  +    +K
Sbjct: 480 TLIPLLTSRFSK 491



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 73/166 (43%), Gaps = 7/166 (4%)

Query: 671  VGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            + ++ S I + LI + +   + + L  + +L + +  +L   AL     ++ ++  ++ L
Sbjct: 866  LALMASIILIYLIMVALYDSYVYPLVVMFSLPMALMGSLLALALTKGTLSIFSIMGLIML 925

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G    + +++ D      +L    +  ++ ++K++       + T++A  I +LP+A+ 
Sbjct: 926  MGLVAKNAILLVDF---TNQLKEAGVEVKEALEKAVKIRFRPILMTTVAMVIGMLPIALA 982

Query: 790  GGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            GG+        A  +  G++ +   ++ +   I         K  +
Sbjct: 983  GGAGAEWKNGLAWVIIGGLLSSMFLTLVVVPVIYYLFDRLMFKLGK 1028


>gi|307610908|emb|CBX00525.1| chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila 130b]
          Length = 1069

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 80/536 (14%), Positives = 156/536 (29%), Gaps = 54/536 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN P ++ L  ++C +G        L Q  +D FP   P               +V++ 
Sbjct: 10  LRNRPLILALTIILCLLGGYT-----LQQMPVDVFPEFAPP-------------QVVVQT 51

Query: 61  DEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    V   +    +   +                + IT+ F D          V 
Sbjct: 52  QVPGMATQDVETLVTYLLESAINGTPGVASVRSKTSVGLSTITVVFDDKTDIYRNRQLVN 111

Query: 117 LFLQGVNSKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             LQ   ++L       + L  T+     +  +  +           S   IR RI  +G
Sbjct: 112 ERLQQAVNRLPPGANAPVMLPVTSAVGWLVKYALISRTASPEALRTISDWTIRPRILALG 171

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
              + +        + Q     D  R+     T  ++       N +  G          
Sbjct: 172 GVAAVVSV---GGEVKQYQVLLDSQRMVAYGITIEEVRQALTSANQNVPGAFVHQA---- 224

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                          G     +T             +     G                 
Sbjct: 225 ---------------GTEFVVSTMGRIKTLDDIKKTLIVVRNGVPITINNVATVAFGGEI 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              D        +   I       +   T +    L  + R+    ++L     R     
Sbjct: 270 KRGDASYNAKNAVIGTISKIYGADTLTTTYKVEQALEEIKRSLPAGVELVTEVFRQANFI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +           A +V+ VLF+ ++  +   +   S+ ++ I+ L +L   G  +   
Sbjct: 330 ESAIHNLTRALIEGAIIVIAVLFLFLMNWRASFITFLSMPVSFIVGLLVLHYFGFGINSM 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS------LDMGFSRAYSTIFDSNIT 469
           ++ G+ + IG  VD  I+  E +    R N+    S      +        S++  + I 
Sbjct: 390 TLGGMAIAIGEVVDDGIITVENVVHRLRLNRLAKKSLPAIEIVFDAVLEIRSSVVYATII 449

Query: 470 ALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             +  + +FF  G +       AI    S++ S+  +I+ V A+   ++  K  K 
Sbjct: 450 ISLVFLPIFFLSGISERIFSPLAIAYIASVMGSLVVSITTVPALCYLLLVGKTEKK 505



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 72/223 (32%), Gaps = 11/223 (4%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-IS 676
            +   Y         +V + +++    +     +              I      +I  +
Sbjct: 285 TISKIYGADTLTTTYKVEQALEEIKRSLPAGVELVTEVFRQANFIESAIHNLTRALIEGA 344

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            I + +       W  +     ++ +     L     FG   N   +  +   IG  V+D
Sbjct: 345 IIVIAVLFLFLMNWRASFITFLSMPVSFIVGLLVLHYFGFGINSMTLGGMAIAIGEVVDD 404

Query: 737 KVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++    V  R+R N +L   S+   +++  ++ E     VY ++   +  LP+    G 
Sbjct: 405 GIITVENVVHRLRLN-RLAKKSLPAIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGI 463

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPI--LLFIYDWRAKN 830
               F   AI     ++ +   SI     +  LL +     K 
Sbjct: 464 SERIFSPLAIAYIASVMGSLVVSITTVPALCYLLLVGKTEKKQ 506



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 99/289 (34%), Gaps = 10/289 (3%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
            V +S +        L+      G D    IQ  ++    +     +  L ++    +  Q
Sbjct: 774  VTVSSVLEGQRTFDLYVRMGEEGRDSMKAIQNMLIDAHGLANQETKIPLRAVADIQLEPQ 833

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
             F   +  + R+     +   +     + + +      +S      I          +  
Sbjct: 834  PFAINRENVQRVLVIAFNVQGRDLGSVIQEVQQRIKEKVSLPSGYFIQYGGQFESQQQAS 893

Query: 670  IVGVIISAIAMLIYIWIRFKWYFAL--GAITTLILDITKTLGFFALF--GIEFNLTAVAA 725
             V ++  A+A+ I + +  K +       +    L +    G  +LF    + ++ A+  
Sbjct: 894  RVIILFGALAIFIMLILLHKAFGTFREALLVMFNLPLALIGGVVSLFLASGDMSVAAMIG 953

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             +TL G +  + +++        +L T       ++ +   + L   + T+  A + ++P
Sbjct: 954  FITLFGIAARNGIILVSHYN---QLRTQGQPREQVVIQGTLDRLVPVLMTAATAALGLIP 1010

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +    A  +  G+  +   ++F+   +   +  WR K  
Sbjct: 1011 LLWGSPSGKELERPLAQVLLGGLFTSTFLNMFVVPTVYNTMETWREKRQ 1059


>gi|323699659|ref|ZP_08111571.1| acriflavin resistance protein [Desulfovibrio sp. ND132]
 gi|323459591|gb|EGB15456.1| acriflavin resistance protein [Desulfovibrio desulfuricans ND132]
          Length = 1076

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/540 (10%), Positives = 160/540 (29%), Gaps = 35/540 (6%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            ++ +++ ++  +G+            ++R+P       +             L     D
Sbjct: 19  VFVNLMFILLMVVGVFCVF-----DLPVERYPDVRMGKVV---------ISAFLPGASPD 64

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V   +    ++    L+          + +  I + F D    + + D++   +  + +
Sbjct: 65  EVETLVTRKIEDALEDLENVEFIRSRSFRQRCSIMVKFLDDTDYDKLYDELRFKVLSIQN 124

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
            L  D            E   VLS N + +  + A+     +  +    +       +  
Sbjct: 125 DLPSDMDPPDFTVIRVSEWLPVLSVNLLGERSNRALSL---MADELKLPLQSIPGVKEVQ 181

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
            S     +     DP ++ +L  T  ++                      +         
Sbjct: 182 ISGEYTREFHVNLDPEKMMRLGVTFDQVGQAL------------------EGANVSVPAG 223

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
           D +  SG ++  A   F  +       +  D  G+         + G           + 
Sbjct: 224 DFISDSGEYVIVADQKFRSRDEVARTIVRRDLDGSFVTVGDVLSSAGMDYRDPFVVSSVD 283

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                        + +          + A  R       +  V  ++    +  +    G
Sbjct: 284 GRDAVSVKVLKSPEGNSLDIGAAVEKVVAEYRPVLDKEGVQAVVTQDQRIPIRENINTLG 343

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           +  +V  +++     + +  +  ++    +  + ++T+ ++ + G ++   ++   VL  
Sbjct: 344 SNLLVGIVLVCACIWLFMGFRNAMLTTVGVPFSFLVTMIIMWITGNSINEITLFSFVLVS 403

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           G+ VD  I+V E I    +  + +  ++  G S  +  +  +  T + A + +    G  
Sbjct: 404 GIIVDDAIVVVENIYRHVQDGKGLREAVVDGASEVFLPVVAATSTTVAAFMPMLIMTGST 463

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
              FA+         + + +  +  + +  + +     ++                   R
Sbjct: 464 GEFFALVPKAVSFAIIASLVECLAILPLHFLDWPGATRLEEQAAEHLQARDPRFMGWLKR 523



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 57/154 (37%), Gaps = 6/154 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +++  + +   IW+   +  A+     +      T+    + G   N   + + + + G 
Sbjct: 346 LLVGIVLVCACIWLFMGFRNAMLTTVGVPFSFLVTMIIMWITGNSINEITLFSFVLVSGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +        R+ +    +E     V  +     + +PM +  GS
Sbjct: 406 IVDDAIVVVENI---YRHVQDGKGLREAVVDGASEVFLPVVAATSTTVAAFMPMLIMTGS 462

Query: 793 VIGSFAI---PMAFGIVVAASSSIFIAAPILLFI 823
               FA+    ++F I+ +    + I     L  
Sbjct: 463 TGEFFALVPKAVSFAIIASLVECLAILPLHFLDW 496


>gi|296119078|ref|ZP_06837650.1| exporter of the MMPL family protein [Corynebacterium ammoniagenes
           DSM 20306]
 gi|295967913|gb|EFG81166.1| exporter of the MMPL family protein [Corynebacterium ammoniagenes
           DSM 20306]
          Length = 801

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 67/479 (13%), Positives = 139/479 (29%), Gaps = 45/479 (9%)

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           V      L  I  LA+L+              +LG+GLA+D  + +  R REE  K + V
Sbjct: 202 VVGALSILGSIGILAILAGFLQVNVFAQAVVTLLGLGLAIDYGLFMVSRFREELDKGREV 261

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             ++ +  + A  T+  S     +A   LF F    ++  A     ++ ++   +++++ 
Sbjct: 262 KDAVAVTTATAGQTVVFSAAMVAVAISGLFIFPQAFLKSVAYGSISAVGLAALLSVTLLP 321

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCI----AIQFMRARFWGVGISILFS------- 557
           A+   +       SI     +   L               A+   V I  L         
Sbjct: 322 ALFGLLGHNIDKWSIRRTKRTARRLEDTWWYRLPKWAMKHAKLMTVAICGLLIALTLPIV 381

Query: 558 ---------------ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                            +          +       ++L V       L  V   +  L 
Sbjct: 382 NISFGGINETYLPPRNETRVAQDKFNEEFPSFRTEPVKLVVDNASNEQLVDVIMQVRELD 441

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                        +    L     D      ++  ++           +  T  +  +  
Sbjct: 442 GLTSPMAPSSATVDGTTVLSAGIEDRDDYADIVHELENLNAPDGVNLYVGGTPAMEVESL 501

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE---- 717
             L  K    VI   +A  I + + F      + AI   +L +  TLG      +     
Sbjct: 502 DALFDKLPWMVIYILVATFILMALVFGSVVLPMKAILMTVLTLGATLGILTAMFVSGIGS 561

Query: 718 ----------FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                      +   V  +  + G S + +V +  RM +         +  + I+     
Sbjct: 562 GLLSFSPGPLMSPILVLIIAIIYGLSTDYEVFLVSRMVE---ARKQGATTDEAINSGTAH 618

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYD 825
           T G     ++   +           ++   A  M F + +      + +   ++  + +
Sbjct: 619 TGGIITAAALIMIVVAAAFGFSDIVMMKYIAFGMIFALFIDATIVRMLLVPAVMHLLRE 677


>gi|152966995|ref|YP_001362779.1| protein-export membrane protein SecD [Kineococcus radiotolerans
           SRS30216]
 gi|151361512|gb|ABS04515.1| protein-export membrane protein SecD [Kineococcus radiotolerans
           SRS30216]
          Length = 684

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 113/557 (20%), Positives = 188/557 (33%), Gaps = 82/557 (14%)

Query: 46  LGLDLRGGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLS 101
           L LDL GG+ +VL              +Q  +D +R  +   G+    ++    + I++S
Sbjct: 59  LALDLEGGTQVVLTPRATAGGTVPPEQVQRAADIIRQRVDATGLSETEVQVQGGQNISVS 118

Query: 102 FADS---RFKENIADKVTLFLQGVN-----------------SKLNVDPKKNLLVTTTEK 141
                     + I+    L ++ V                  S    D        T   
Sbjct: 119 IPGQATREQLDLISQSAQLRMRVVLYAEPVTPPAAPTPTDGASAAPTDGATPTDGATATP 178

Query: 142 EISIVLSQNNIDQVISHAIEQS------------------------------------ME 165
                 +        +   + +                                      
Sbjct: 179 TDGATPTDGATPTDGATPTDGATASPTQSADGAAAPAALQAAGTATTAPAEPAPAEPAPA 238

Query: 166 IIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
                     ++E                    P+        +           +    
Sbjct: 239 EPAPATTPPSLAELATPAATPGPGQPTGTSSPAPTDASDQSWLSTPDLAAVYANLDCSDP 298

Query: 226 FMFGVRFLRD---------SDGNQYLVEDKVEISGIHLNGATANFDPKTHK-----PVVD 271
                  + D          DG    V    E+ G  L  A +     +        VV 
Sbjct: 299 AQRSGGVVDDPARPLVTCSQDGLTKYVLGPAELEGTDLTSAVSAQATNSQGFNTGAWVVR 358

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA----QISGNFTIET 327
           + F+  GA  F  +T               VL   V+       +      I G+FT E+
Sbjct: 359 LKFNGPGADAFSALTTRISTLEPPRNQFAAVLDGLVVTAPSVDQRFGADVDIEGDFTRES 418

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  LA  L+ G+LP+   +  E  V A LGS+ +  G  A + GLVL+V + +V Y   G
Sbjct: 419 AEALAQQLQFGALPVSFTVQTEDQVSATLGSEQLRNGLIAGIVGLVLVVAYSLVQYRALG 478

Query: 388 LVADFSIFLNVILTLALLSLLGA----TLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
           LV   S+ L   L   +L LL       L+L  IAG+++ IG+  DS IL  ER+R+E R
Sbjct: 479 LVTIGSLLLAAALNYGVLLLLSWLQGFRLSLAGIAGLIVAIGVTADSFILFFERVRDEIR 538

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA 503
             + +  +++ G+ RA  TI  S+  +L++ VVL+    G VRGFA T+G++ +I +   
Sbjct: 539 DGRILSSAVEAGWHRARRTILVSDAVSLLSAVVLYVLAVGNVRGFAYTLGITTIIDVLIV 598

Query: 504 ISIVRAMMIFIIRYKKM 520
           +     ++  + R K  
Sbjct: 599 VLFTHPVVALLARTKFF 615



 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/284 (12%), Positives = 94/284 (33%), Gaps = 10/284 (3%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
               +S   +           +    +  G      L  R   L   R+   ++   D  
Sbjct: 336 LTSAVSAQATNSQGFNTGAWVVRLKFNGPGADAFSALTTRISTLEPPRNQFAAVL--DGL 393

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                             GD   ++      + +   +    T+Q  + V   +  E +R
Sbjct: 394 VVTAPSVDQRFGADVDIEGDFTRESAEALAQQLQFGALPVSFTVQTEDQVSATLGSEQLR 453

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAV 723
            G++  I+  + ++ Y  ++++    L  I +L+L      G   L     G   +L  +
Sbjct: 454 NGLIAGIVGLVLVVAYSLVQYR-ALGLVTIGSLLLAAALNYGVLLLLSWLQGFRLSLAGI 512

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A ++  IG + +  ++ ++R+R  ++           ++   +      + +   + +S 
Sbjct: 513 AGLIVAIGVTADSFILFFERVRDEIRD---GRILSSAVEAGWHRARRTILVSDAVSLLSA 569

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + + V     +  FA  +    ++     +    P++  +   +
Sbjct: 570 VVLYVLAVGNVRGFAYTLGITTIIDVLIVVLFTHPVVALLARTK 613


>gi|70729926|ref|YP_259665.1| AcrB/AcrD/AcrF family protein [Pseudomonas fluorescens Pf-5]
 gi|68344225|gb|AAY91831.1| AcrB/AcrD/AcrF family protein, putative [Pseudomonas fluorescens
           Pf-5]
          Length = 1073

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/554 (13%), Positives = 157/554 (28%), Gaps = 45/554 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L   IC IG L AL     ++  D FP                   +V + + 
Sbjct: 11  KPYTFIVLAIFICIIGPLAAL-----RTPTDVFPDIGIPV-----------VAVVWQYNG 54

Query: 63  --DDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              D + G +    +  L + +                + + F           +VT   
Sbjct: 55  LSPDAMAGRVIYTYERSLSTTVNDIEHIESQSLPGMGIVKIFFQPGVDIRTANAQVTAVS 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q V  ++       L++  +   + I+    +   +     +    +       +     
Sbjct: 115 QTVLKQMPPGITPPLILNYSASTVPILQMAFSSPTLSEA--KIRDLVQNNIRLPLSALPG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       Q+  + DP  L     +   +                          N
Sbjct: 173 LAMPTPMGGKQRQITLDLDPQALAAKGLSAQDVGNALAAQ-------------------N 213

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           Q +     ++ G        N  P   + + D+    +           ++        +
Sbjct: 214 QIIPVGTAKLGGDEYTV-LLNNSPTAIEELNDLPIKTVDGALITIGQVAHVRDGSPPQTN 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +               IS    ++    +   +     P     +          S 
Sbjct: 273 IVRVDGRRAVLMPALKNGNISTLSIVDGIRQMLPRINETLPPALKTSLLGDASVFVKQSV 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   I A L   ++ + +   +  L+   SI L V+  +ALL+L G TL + ++ G
Sbjct: 333 GSVAREGIIAALLTSAMILLFLGSWRSTLIIAASIPLAVLSAIALLALSGQTLNVMTLGG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   +  E I     + ++V  ++  G  +     F S +   I  V +F 
Sbjct: 393 LALAVGILVDDATVTIENINWHLEQGKAVKQAILDGARQIVGPAFVSLLCICIVFVPMFL 452

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R  A+ +  ++  S   + ++V  + +++                   I  
Sbjct: 453 LQGIAGYLFRPMALAVIFAMASSFILSRTLVPTLAMYL-LKPHTPEAGPGHHPEDAFINH 511

Query: 537 CIAIQFMRARFWGV 550
               Q  + R   V
Sbjct: 512 HEGEQHAKPRNALV 525



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 82/203 (40%), Gaps = 9/203 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               ++L  + + +   +  S + +  +   +    + R+GI+  ++++  +L+++    
Sbjct: 299 DGIRQMLPRINETLPPALKTSLLGDASVFVKQSVGSVAREGIIAALLTSAMILLFLG--- 355

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    ++ L +   +   AL G   N+  +  +   +G  V+D  V  + +    
Sbjct: 356 SWRSTLIIAASIPLAVLSAIALLALSGQTLNVMTLGGLALAVGILVDDATVTIENIN--- 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI-PMAFGIVV 807
                  + +  I     + +G +  + +   I  +PM +  G  I  +   PMA  ++ 
Sbjct: 413 WHLEQGKAVKQAILDGARQIVGPAFVSLLCICIVFVPMFLLQG--IAGYLFRPMALAVIF 470

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           A +SS  ++  ++  +  +  K 
Sbjct: 471 AMASSFILSRTLVPTLAMYLLKP 493



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 65/162 (40%), Gaps = 5/162 (3%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +G++ + + + + I + F  W      IT L   +   +    L     ++ A+   +  
Sbjct: 907  LGLLGAVVLIYLLIVVNFQSWVDPFVIITALPAALAGIVWMLFLSATSLSVPALTGAILC 966

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + ++V    R+  +L     + +  ++            T++A  I +LP+A+ 
Sbjct: 967  MGVATANSILVVSFCRE--RLAEHGDALKAALEAGYTR-FRPVCMTALAMIIGMLPLALS 1023

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                       +  G+++A  +++     +   ++  R ++A
Sbjct: 1024 EEQN-APLGRAVIGGLILATVATLIFVPVVFSLVHGRRPQSA 1064


>gi|134294076|ref|YP_001117812.1| acriflavin resistance protein [Burkholderia vietnamiensis G4]
 gi|134137233|gb|ABO58347.1| acriflavin resistance protein [Burkholderia vietnamiensis G4]
          Length = 1028

 Score =  130 bits (327), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 60/504 (11%), Positives = 139/504 (27%), Gaps = 35/504 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL       L    + ++P  +    IS+     G S  +++  
Sbjct: 16  RRPVLSIVCSLLILLVGL-----RSLGALPVRQYP-MLESATISVETAYPGASQALMQ-- 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 GF+     +  +          +  Q ++ +      +   +    ++   +Q 
Sbjct: 68  ------GFVTTPIAQSIATADGIEYLTSTSTQGKSVVKARLRLNANADRAMTEIMAKVQE 121

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  K+      +++   T+   +++    + D +     E +  ++R     +       
Sbjct: 122 VKYKMPEGAYDSVITKLTDAPTAVMYLGFSSDTL--SIPEITDYVVRVAQPLVTTVPGVA 179

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D SRL     +   ++      N                     
Sbjct: 180 SAEIVGGQNLAMRVWLDASRLAAHGLSAGDVAAALKANNVQAAPGQLKGALTVADISANT 239

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            + D                          +   E             I           
Sbjct: 240 DLTDVGA-------------------FGNLVVKSEANGSFVRLRDVATIELGGQQYNASA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +     L   +                      S   
Sbjct: 281 LMNGRRAVNIAINATPSGNPLDIVRGVQALLPTMERSKPASIRIGDVFDVARFVNASIDE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L ++ + AL+   G +L L ++  +V
Sbjct: 341 VRETIIEAIAIVVVVIFLFLGSFRAVVIPVVTIPLALVGSAALMLAAGFSLNLLTLLAMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +  +G     S +    IT +     +   G
Sbjct: 401 LAIGLVVDDAIVVVENIHRHIESGEPPARAALLGAREIASPVIVMTITLVAVYAPIGLMG 460

Query: 482 GGAVRGFAITMGLSILISMFTAIS 505
           G     F             +A+ 
Sbjct: 461 GLTGSLFREFAFTLAGAVCVSAVI 484



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 9/149 (6%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            E+    I  + I  + + +++     +   +  + T+ L +  +       G   NL  
Sbjct: 339 DEVRETIIEAIAIVVVVIFLFLG---SFRAVVIPVVTIPLALVGSAALMLAAGFSLNLLT 395

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A++  IG  V+D +VV + +    +   +             E     +  ++     
Sbjct: 396 LLAMVLAIGLVVDDAIVVVENIH---RHIESGEPPARAALLGAREIASPVIVMTITLVAV 452

Query: 783 VLPMAVWG---GSVIGSFAIPMAFGIVVA 808
             P+ + G   GS+   FA  +A  + V+
Sbjct: 453 YAPIGLMGGLTGSLFREFAFTLAGAVCVS 481



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 70/200 (35%), Gaps = 10/200 (5%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
            + +E ++K+                  +    L        + + + + + +  +F+   
Sbjct: 821  QAVEFLQKQPLPAGYEIDWLGESRQYVQEGNRLTVT----FVFALVVIFLVLAAQFESLR 876

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + ++ L +   L    L     N+     ++TLIG      +++     +  +  
Sbjct: 877  DPLVILVSVPLSVCGALVPLYLGFATLNIYTQIGLVTLIGLISKHGILMVSFANELQR-- 934

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
            T  +  R  I+ +    L   + T+ A    ++P+      G +   +  I ++ G++V 
Sbjct: 935  TQHLDRRAAIEHAAAVRLRPILMTTAAMVAGLVPLIFARGAGAASRFAIGITVSTGMLVG 994

Query: 809  ASSSIFIAAPILLFIYDWRA 828
               ++F+   +   I     
Sbjct: 995  TLFTLFVLPTVYTLIAKRHR 1014


>gi|254559080|ref|YP_003066175.1| efflux transporter [Methylobacterium extorquens DM4]
 gi|254266358|emb|CAX22122.1| efflux transporter (AcrB/AcrD/AcrF family multidrug efflux pump
           [Methylobacterium extorquens DM4]
          Length = 1031

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 72/526 (13%), Positives = 163/526 (30%), Gaps = 25/526 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
             +         +   +  + ++  + ++       ++ +  +  T+ F      +   +
Sbjct: 49  VTITQGGAAPSELQTQVTKWVEDSIAGVRGVKHITSAITEGASVTTVEFRLEVNTDRAVN 108

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  +   L     + ++       + I++       +     + S  +  +    
Sbjct: 109 DVKDAVSKIRINLPRTIDEPVIQRVEITGLPILIYGVTSPAMTPA--DLSWFVEDKVART 166

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +          +  ++     P RL  L  T A ++    + +    G    V   
Sbjct: 167 LQGVKGVGGVERVGGVAREIRITPLPDRLLALGITAADVNKQVRVTSADLAGGRGEVGGR 226

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S           ++    +                       G R+        +   
Sbjct: 227 EQSIRTLAASRTIRDLKATSIVLP--------------------GGRKVRLDDLATVEDS 266

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +             +     S  +  S            A    G   I+     + +V 
Sbjct: 267 IEEPRTFARFNGESVVAFSVSRGSGASDAEVAAGVEKKIAEFAQGYPDIQF-QEIDSSVA 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A  GS +    T    A L +IV+F+ +   +  L+A  ++ L+V+ T   +  LG TL 
Sbjct: 326 ATRGSYASAMHTLMEGAALAVIVVFLFLRDWRATLIAAVALPLSVLPTFWAMDALGFTLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  I L  G+ VD  I+  E +    R  +S + +   G       +     T +  
Sbjct: 386 GISLLAITLVTGILVDDAIVEIENVVRHMRMGKSPYRASIEGADEIGLAVIAITATLIAV 445

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              + F GG A R F I  GL+I +S+F ++ + R +   +  Y  ++           +
Sbjct: 446 FAPVSFMGGIAGRYF-IQFGLTIAVSVFMSLLVARLITPLLAAY-FLRDHGHAEEREGPV 503

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           +     +     R   + + +  ++ +  ++ T  L  G   K   
Sbjct: 504 MRAYTRLVGWSVRHKWITLMVGLALFAGSIVSTKLLPSGFIPKQDN 549



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 74/249 (29%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +   R V L  + +  +S++      +            +            +E   
Sbjct: 246 SIVLPGGRKVRLDDLATVEDSIEEPRTFARFNGESVVAFSVSRGSGASDAEVAAGVEKKI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +  +  P    Q  +                 +  +A+A+++       W   L A   
Sbjct: 306 AEFAQGYPDIQFQEIDSSVAATRGSYASAMHTLMEGAALAVIVVFLFLRDWRATLIAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T       G   N  ++ A+  + G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSVLPTFWAMDALGFTLNGISLLAITLVTGILVDDAIVEIENV---VRHMRMGKSPYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIA 816
              +  +E     +  +        P++  GG        F + +A  + ++   +  I 
Sbjct: 423 ASIEGADEIGLAVIAITATLIAVFAPVSFMGGIAGRYFIQFGLTIAVSVFMSLLVARLIT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PLLAAYFLR 491



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 80/215 (37%), Gaps = 7/215 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V ++     S A   ++E      T       +   +    +I +E+    ++ +
Sbjct: 789  DRAVRVAVEANMEGSDALGSLIEQALATPTAKSLPPGVTIRQTGDAEIMQEVFSGFLMAM 848

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L I   +    +  +  ++  V  +L L+G 
Sbjct: 849  GAGIMMVYAVLVLLFGSFLQPLTILFSLPLSIGGAILGLLICHMPISMPVVIGLLMLMGL 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAVEEMA---RGVDRVTAIVDAGRKRARPIVMTTIAMAAGMVPSAMALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            GG      A+ +  G++V+   S+     + L + 
Sbjct: 966  GGEFRAPMAVAVIAGLIVSTLLSLVFVPAVFLLMD 1000


>gi|188585911|ref|YP_001917456.1| protein-export membrane protein SecD [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350598|gb|ACB84868.1| protein-export membrane protein SecD [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 423

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 120/389 (30%), Positives = 213/389 (54%), Gaps = 10/389 (2%)

Query: 139 TEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE-Q 197
           +     ++ +++   +    AIE++  IIR R+D++G+SE  +Q+ G++RI ++L G   
Sbjct: 39  SGGIYVLLEAEDVAGEDDDDAIERAKTIIRSRVDELGVSEPVVQQEGANRIRVELAGAGI 98

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           D  R   ++G TA++ F               +    D   +    +    ++G H+   
Sbjct: 99  DRERAMDVIGRTAQLEF-------YGPDLYRQIDVTEDEQIDLENKDVSPFVTGEHVED- 150

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                    +P V++ F   GA R  E T++++   L +VLDG +++AP I       + 
Sbjct: 151 AGVGYTPQGQPYVNVHFTSQGADRMREATQEHMRDHLVIVLDGELVSAPEIRDV-IHDQG 209

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
            I G  ++E A  +A MLR+G+LP+ L  +E R +G  LG +   +   A + GL L+V+
Sbjct: 210 MIDGMGSVEEAQNVALMLRSGALPVSLTELETRTLGPSLGEEFQEQSLQAGLLGLALLVI 269

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FM+ +Y   GL+A+ ++ + +++    L  L AT TLP IAG++L +G+AVD+N+++ ER
Sbjct: 270 FMLGVYRLPGLMANIALAVYLVIIFNALIYLDATFTLPGIAGLILSLGMAVDANVIIFER 329

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           I+EE    +++  S++ GF +   TI D+NIT LIA  VLF+FG G +RGFA+T+   I+
Sbjct: 330 IKEELNYGKTLRVSVESGFKKGIRTILDANITTLIAAAVLFYFGSGPIRGFAVTLSTGII 389

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            SM TA+   R ++  ++  + ++     
Sbjct: 390 ASMITAVLFTRVILKLLVSSRLIRDTKYF 418



 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/275 (12%), Positives = 97/275 (35%), Gaps = 4/275 (1%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S   +   +          G  +         A+R  + +        + + D    +  
Sbjct: 140 SPFVTGEHVEDAGVGYTPQGQPYVNVHFTSQGADRMREATQEHMRDHLVIVLDGELVSAP 199

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             ++ +       G    +      +  +   +    T   T  +GP +  E   + +  
Sbjct: 200 EIRDVIHDQGMIDGMGSVEEAQNVALMLRSGALPVSLTELETRTLGPSLGEEFQEQSLQA 259

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++    ++I++   ++    L A   L + +             F L  +A ++  +G 
Sbjct: 260 GLLGLALLVIFMLGVYRLP-GLMANIALAVYLVIIFNALIYLDATFTLPGIAGLILSLGM 318

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +V+  V++++R+++ +       + R  ++    + +   +  ++   I+   +  +G  
Sbjct: 319 AVDANVIIFERIKEEL---NYGKTLRVSVESGFKKGIRTILDANITTLIAAAVLFYFGSG 375

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            I  FA+ ++ GI+ +  +++     IL  +   R
Sbjct: 376 PIRGFAVTLSTGIIASMITAVLFTRVILKLLVSSR 410



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 50/413 (12%), Positives = 119/413 (28%), Gaps = 22/413 (5%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD--E 62
            W  +   ++  + +          +           + I+LGLDL GG +++LE +   
Sbjct: 3   RWKYVTILLVILLAVFGLSFYSYHYAR----------DNINLGLDLSGGIYVLLEAEDVA 52

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFAD-SRFKENIADKVTLFLQ 120
            +  +  ++     +RS + + G+    ++Q   N+I +  A     +E   D +    Q
Sbjct: 53  GEDDDDAIERAKTIIRSRVDELGVSEPVVQQEGANRIRVELAGAGIDRERAMDVIGRTAQ 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                 ++  + ++         +  +S     + +  A        +  ++    S+  
Sbjct: 113 LEFYGPDLYRQIDVTEDEQIDLENKDVSPFVTGEHVEDAGVGYTPQGQPYVNVHFTSQGA 172

Query: 181 IQRL--GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
            +        +   L    D   +              +    S +        LR    
Sbjct: 173 DRMREATQEHMRDHLVIVLDGELVSAPEIRDVIHDQGMIDGMGSVEEAQNVALMLRSGAL 232

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              L E +    G  L         +     + +    M           NI   + +V+
Sbjct: 233 PVSLTELETRTLGPSLGEEFQEQSLQAGLLGLALLVIFMLGVYRLPGLMANIALAVYLVI 292

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L        +P     I        A ++        L     +      G   G 
Sbjct: 293 IFNALIYLDATFTLPGIAGLILSLGMAVDANVIIFERIKEELNYGKTLRVSVESGFKKGI 352

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
            +I       +    +      + Y   G +  F++ L+  +  ++++ +  T
Sbjct: 353 RTILDANITTLIAAAV------LFYFGSGPIRGFAVTLSTGIIASMITAVLFT 399


>gi|149181190|ref|ZP_01859689.1| transporter, AcrB/AcrD/AcrF family protein [Bacillus sp. SG-1]
 gi|148851089|gb|EDL65240.1| transporter, AcrB/AcrD/AcrF family protein [Bacillus sp. SG-1]
          Length = 1043

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 73/677 (10%), Positives = 200/677 (29%), Gaps = 33/677 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + V L ++I     L A  N      L+  P+                   V     
Sbjct: 10  KNKFAVWLITLIITTAGLYAGLN----MKLETLPNINTPIV---------SITTVYPGAT 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++    L    +   +  Q  + I + +  S+  E   D+V   L  +
Sbjct: 57  PEEVADKITEPIEKRVGNLNGVNVVSSTSYQNASAIQIEYKFSKDMEEAEDEVKDVLTNI 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    +   +   +     ++    ++        + +  +    +  +   +    
Sbjct: 117 G--LPEGVQDPSVSRLSFNAFPVM--ALSVSNENETISQLTGTVEDTILPALEGVDGVSS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S + + ++    +  R+ +L      +       + +    ++ +   + S      
Sbjct: 173 VEISGQQVEEVQLVFNEERMNELGIDEETVKGVIQGSDVNVPLGLYTLDKTQKSVVVDGN 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHK----------PVVDISFDEMGARRFFEVTRDNIGK 292
           +    ++  + +    +                    V  +  +           +    
Sbjct: 233 IMSLEDLENMVIPVMPSAQAQSQGPTGAAGESPSVQAVPGTAAQAPTGLPTVQLSEIADI 292

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
            L   +D    T    +  +   K+  +    +  A           +            
Sbjct: 293 ELVGTVDSVSRTNGRESIGMQIVKSADANTVDVVNAVKEEISAFEKDIDGIEITSTFDQG 352

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                S S         A   +I++ + +   K   ++  SI L++++ + +L  +  TL
Sbjct: 353 EPIEESVSTMLNKALFGALFAVIIILLFLRDIKSTFISVISIPLSLLIAILVLQQMNITL 412

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENR---KNQSVFCSLDMGFSRAYSTIFDSNIT 469
            + ++  + + IG  +D +I+V E I        +       +       +  I  S I 
Sbjct: 413 NIMTLGAMTVAIGRVIDDSIVVVENIYRRMSLEGEKLRGKELIREATKEMFVPIASSTIV 472

Query: 470 ALIATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +   + L    G        FA+T+  ++L S+  A++IV  +   + +    K +D +
Sbjct: 473 TIAVFLPLGLVQGMIGELFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKGVKKKVDHD 532

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              R  L    +    +  +     +++   + S+ L+   G+++    +  + +   + 
Sbjct: 533 KPGRLALGYKKVLNWTLNHKVITSLLAVAMLVGSLFLVPLIGVSFLPSEEDKMVVATYSP 592

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            P  +      +          +       + V  +       +   +  +   + TE  
Sbjct: 593 APGQMDEEVERISQDAEEFFLSREDVTTVQYSVGGENPMNPGSSSGAMFFVEFDEDTENF 652

Query: 647 PLSTIQNTEIVGPKISR 663
                Q  + +   +  
Sbjct: 653 SEEKEQVIQELQASVEE 669



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 89/242 (36%), Gaps = 3/242 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              +++E +   D   +    E   +  ++    ++V     ++       + +    I 
Sbjct: 287 SEIADIELVGTVDSVSRTNGRESIGMQIVKSADANTVDVVNAVKEEISAFEKDIDGIEIT 346

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I   +       +  +  A++I +           ++ ++ L +   +    
Sbjct: 347 STFDQGEPIEESVSTMLNKALFGALFAVIIILLFLRDIKSTFISVISIPLSLLIAILVLQ 406

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  ++D +VV + + + M L    +  ++LI ++  E     
Sbjct: 407 QMNITLNIMTLGAMTVAIGRVIDDSIVVVENIYRRMSLEGEKLRGKELIREATKEMFVPI 466

Query: 773 VYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++    K
Sbjct: 467 ASSTIVTIAVFLPLGLVQGMIGELFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKGVK 526

Query: 830 NA 831
             
Sbjct: 527 KK 528



 Score = 67.4 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 95/253 (37%), Gaps = 8/253 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+ + V   ++ S++ G  S      +    V++  +           ++  +   
Sbjct: 792  TIQSPLGVEVAVEDVVSVEEGQTSDTVTRRDGRIFVQVIGEIKSDDVSKVSADIQSEMEE 851

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     N   V   I     + G+  ++ +   + + + I F    A  AI  +L  
Sbjct: 852  LELPAGVDVNMGGVTEDIQESFTQLGL-AMLAAIAIVYLILVITFGGGLAPFAILFSLPF 910

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++++   L LIG  V + +V+ DR+   + +    +S R+ + 
Sbjct: 911  SIIGGLLGLLIAGETLSISSMIGALMLIGIVVTNAIVLIDRV---IHMENDGLSTREALL 967

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    L   + T++A   ++ P+A+             + +  G+  +   ++ I   +
Sbjct: 968  EAGTTRLRPILMTAIATIGALFPLALGLEGGGLISKGLGVTVIGGLTSSTLLTLVIVPIV 1027

Query: 820  LLFIYDWRAKNAR 832
               +   + K  +
Sbjct: 1028 YETLMKMKRKFTK 1040


>gi|206602722|gb|EDZ39203.1| Putative cation/multidrug efflux pump split [Leptospirillum sp.
           Group II '5-way CG']
          Length = 1070

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 68/669 (10%), Positives = 175/669 (26%), Gaps = 39/669 (5%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
           +  +D FP+      I            +        V   +    ++  S +       
Sbjct: 31  RLPIDLFPNLAVPVLI---------VGTIYPGASPLDVERSVTYPLEKTLSTIDNVSHIQ 81

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
              R+  + I + F           +    +  + ++L    ++  ++      I +V  
Sbjct: 82  SQSREGVSAIQVWFNWGEDLNGGMVQAVQKISQILNQLPPGIQQPFILKFDIANIPVV-- 139

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
              +     + I+           Q+    +  Q   +   + Q+    DP RL     +
Sbjct: 140 SVTVSDPSLNQIQLYDLAYNTIEPQLEQLANVSQATVNGGKVRQININVDPHRLFARNLS 199

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
             ++       N  +      +     +      +                  D   + P
Sbjct: 200 IMQVVNAINQANFIQPSGDIKIGTKDYNLFTNNQIA-------------HHLVDTLKNVP 246

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
           V      +  A   F      +        +   +          + +   +    ++  
Sbjct: 247 VSVQQTPDGRAVPIFVKDFARVTDSAETQTNIVRVNGENAVYLAVNKQPGSNTVKVVDEV 306

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                 LR     ++LN            S           + L ++V+ +        L
Sbjct: 307 RQALPKLRGLPPGVRLNTF-FDQSLYIRQSIKSLFHEVLQGSVLAILVILLFFGNIPATL 365

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +   +I L+ ++ +  L     TL + +  G+ LGIG  VD +I+  E I      + + 
Sbjct: 366 IISTAIPLSALVAMVFLYFTHQTLNIFTFGGLALGIGRLVDDSIVELENIYRHFSVDATP 425

Query: 449 F-CSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAI 504
              +L          I  S IT ++  + + F    G       A+T+  ++  S F + 
Sbjct: 426 RPRALLAAAREVAMPILASTITTVVVFLPVVFMQGIGRLLFTPMALTITFALFASFFVSR 485

Query: 505 SIVRAMMIFIIRY---------KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
           ++   +    +                             + +       +   + + + 
Sbjct: 486 TVTPLLCYRFLHPSRTPLTDRQGPFAWFQRAFQRVEIFYENLLNYAIHHRKKIFLTVLLT 545

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
           F +    + F     +    +    + + A     + +     + ++            +
Sbjct: 546 FLLSLPLVRFIGTEFFPAPDESQFTINIQAPPGTRIELTTELAKEIEQVIRKTLPPRDVR 605

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK-ISRELIRKGIVGVI 674
                +  +            +             +   +       S EL+ +    + 
Sbjct: 606 LIASNIGLRNTAGRGTNGAASVFTNNTGPDTAFVQVNLVDPDQRTESSDELMNRVRTAMK 665

Query: 675 ISAIAMLIY 683
                + IY
Sbjct: 666 GMFPGVGIY 674



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 59/151 (39%), Gaps = 8/151 (5%)

Query: 682  IYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            +Y+ +             + ++ +     +  F L G  F+  A   V+  +G + ++ V
Sbjct: 899  VYMVLATQFRSLIDPFVIMFSVPMSFIGVIWLFFLTGTSFSTIAFMGVIMTVGIAASNGV 958

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++ D    N       IS  + + K+    L   V TS+A    ++PMA+    G S   
Sbjct: 959  LLVD--YSNRLQREQGISLEEAVVKAGRTRLRPVVMTSLATIFGLIPMALGFDVGSSNSL 1016

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              A  +  G+  A   ++ +   I L ++  
Sbjct: 1017 PLARAVIGGLTCATLFTLILVPTIYLSLHRR 1047



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 75/278 (26%), Gaps = 10/278 (3%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
                                       + +    +       V+         +     
Sbjct: 219 IKIGTKDYNLFTNNQIAHHLVDTLKNVPVSVQQTPDGRAVPIFVKDFARVTDSAETQTNI 278

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                   V L           +V++ V++ + ++  L                 IR+ I
Sbjct: 279 VRVNGENAVYLAVNKQPGSNTVKVVDEVRQALPKLRGLPPGVRLNTFFD--QSLYIRQSI 336

Query: 671 VGVI-----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             +       S +A+L+ +         L   T + L     + F        N+     
Sbjct: 337 KSLFHEVLQGSVLAILVILLFFGNIPATLIISTAIPLSALVAMVFLYFTHQTLNIFTFGG 396

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   IG  V+D +V  + +         +      +  +  E     + +++   +  LP
Sbjct: 397 LALGIGRLVDDSIVELENI--YRHFSVDATPRPRALLAAAREVAMPILASTITTVVVFLP 454

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +    G     F  PMA  I  A  +S F++  +   +
Sbjct: 455 VVFMQGIGRLLF-TPMALTITFALFASFFVSRTVTPLL 491


>gi|261822319|ref|YP_003260425.1| heavy metal efflux pump, CzcA family [Pectobacterium wasabiae
           WPP163]
 gi|261606332|gb|ACX88818.1| heavy metal efflux pump, CzcA family [Pectobacterium wasabiae
           WPP163]
          Length = 1045

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 61/551 (11%), Positives = 142/551 (25%), Gaps = 48/551 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   +++    +   GLL      L ++ LD  P       I           +    
Sbjct: 10  LKNRLLVLLAALFMAAWGLLS-----LQKTPLDALPDLSDVQVI---------IRVSYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          +                + + F D         +V  +L 
Sbjct: 56  KAPQVVENQVTYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFEDGTDPYWARSRVLEYLS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S L  + K +L    T                     +           ++      
Sbjct: 116 QVQSSLPAEAKTSLGPDATGVGWIYEY-ALVDRSGKYSLADLRGFQDWLLKYELKTVPDV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ Q     DP R+R    T  ++       N    G +  +          
Sbjct: 175 AEVASVGGMVKQYQIVVDPERMRTQGITHQQIVSAVQAANQENGGSVLELGEAEYMVRTT 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   +                       +     G     +        P       
Sbjct: 235 GYLKTAQD-------------------FNHVVITTRNGIPVLLQDVATLREGPEMRRGIA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   I   +   +   T+         ++         +           +  
Sbjct: 276 ELNGEGEVAGGIIVMRYGKNALNTLHAVKARLQEIQKSLPAGVEIVPTYDRSQLIEHAID 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V ++  + + + +  LVA  S+ L ++    ++   G    + S+ GI
Sbjct: 336 TLSFKLLEEFAVVAVICALFLFHFRSALVAIISLPLGILGAFIIMRYQGVNANIMSLGGI 395

Query: 421 VLGIGLAVDSNILVNERIRE-----------ENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            + IG  VD+ I++ E + +           +  +N   +   +         +F S + 
Sbjct: 396 AIAIGAMVDAAIVMIENMHKVIEQWRHENPGKQPQNNEWWQLAERAAVEVGPALFCSLLI 455

Query: 470 ALIATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             ++ V +F      G      A T   ++ ++    I++V  +M + +R K        
Sbjct: 456 ITLSFVPVFSLEAQEGRMFSPLAFTKTYAMAVAAGLGITLVPVLMGYFVRGKIPDEQANP 515

Query: 527 PLSRFFLIPDC 537
                  +   
Sbjct: 516 INRWLIALYHP 526



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 79/259 (30%), Gaps = 20/259 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       V L+ +     S     +  +N        V L+ +   S  +     + +
Sbjct: 786  PIVTANGSRVTLAELADVRVSEGPPMLKSENSRLSDWIYVDLRGRDLKSAVEDMQQAVAQ 845

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            +         +                 K  V +  + + + + ++I F +   AL  + 
Sbjct: 846  QVTLPEGVSLSWSGQFEYL----ERATEKMKVVIPFTLLIIFVLLYITFNRIKDALLIMA 901

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---------DRMRKNMK 749
            TL   +   +    L     ++      + L G S    V++           R+   + 
Sbjct: 902  TLPFALIGGVWLLYLLDYNLSVAGAVGFIALAGVSAEFGVIMLLYLNHAVEKHRV---VG 958

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
               +     D I +     +   + T       +LP+      G  ++   A PM  G+V
Sbjct: 959  QALSRQQLMDAIHEGAVLRVRPKMMTVATIMAGLLPIMWGGGSGSEIMQRIAAPMIGGMV 1018

Query: 807  VAASSSIFIAAPILLFIYD 825
             A   S+ +   + L ++ 
Sbjct: 1019 SAPLLSMLVIPAVYLLLHK 1037



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 19/177 (10%)

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L    +V VI +           F +  AL AI +L L I          G+  N+ ++ 
Sbjct: 342 LEEFAVVAVICAL--------FLFHFRSALVAIISLPLGILGAFIIMRYQGVNANIMSLG 393

Query: 725 AVLTLIGYSVNDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTS 776
            +   IG  V+  +V+ + M    +  +        +      L +++  E       + 
Sbjct: 394 GIAIAIGAMVDAAIVMIENMHKVIEQWRHENPGKQPQNNEWWQLAERAAVEVGPALFCSL 453

Query: 777 MAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +   +S +P+          F   A    + + VAA   I +   ++ +    +  +
Sbjct: 454 LIITLSFVPVFSLEAQEGRMFSPLAFTKTYAMAVAAGLGITLVPVLMGYFVRGKIPD 510


>gi|327541447|gb|EGF27985.1| heavy metal efflux pump, CzcA family [Rhodopirellula baltica WH47]
          Length = 1083

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 78/692 (11%), Positives = 197/692 (28%), Gaps = 44/692 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    ++ +   +   G   A+     Q+ +D FP                   +++  
Sbjct: 10  LKQRLLVIAIALFLVGFGTWQAM-----QAPIDVFPDLNRPRV------------VIMTE 52

Query: 61  DE---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 + V   +    +   +          +     + I + F  +    N    V  
Sbjct: 53  APGLAPEEVETLVTFPIETAVNGANGVQAVRSASGVGISVIYVEFDWNTDIYNDRQIVAE 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ V  ++    K  L   ++     ++L     +   +  +E           ++   
Sbjct: 113 RLQLVQERMPKGVKPTLAPVSSIMGQILML-GMWSNDGETEPLELRTLGDWVVRQRLLTI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q         Q     DP  + +      ++       N +  G      +L +  
Sbjct: 172 PGVSQVFTMGGGRKQFQVLVDPDAMLRFGIALHEVKQAVQNSNQNATGG-----YLDEQG 226

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N+ LV     +  I           +     +      +   +          +     
Sbjct: 227 PNELLVRGLGRVQSIKDLQKVVVTMKEGRPIALGQIARVIEGPQVKRGDSSAWVR----- 281

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +    +         + +         E        LR                     
Sbjct: 282 NEDGHYSGGPAVILTINKQPGADTRRVTEDVMAAIDELRPSLPGDLRIEPLYTQKSFIDR 341

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +             LV+I+LF+ ++  +   +   +I L++++T  + S+ G ++   ++
Sbjct: 342 AIENVVEALRDGGILVVIILFLFLMNVRTTFITLTAIPLSLVMTAIVFSIFGLSINTMTL 401

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITAL 471
            G+ + IG  VD  I+  E I    ++N+           +        ++I    +  +
Sbjct: 402 GGLAVAIGELVDDAIVDVENIYRRLKENRGSDNPKHPLLVVFRASIEIRNSIVFGTMIVI 461

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDI 525
           +  + LF      G       +   +SIL S+  ++++   +  +++  +K+K       
Sbjct: 462 LVFLPLFALSGMEGRLFAPLGVAYIVSILSSLLVSLTVTPVLSYWLLGKQKLKGHEKDGF 521

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                 ++    I       RF     +IL ++  + L+           +G +QL V+ 
Sbjct: 522 VLRGIKWIGDKVIRFSLTVPRFNLAVTAILVALSGMFLVSLERDFLPPFNEGAVQLNVVL 581

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-TRVLEMVKKKITE 644
                L+        ++      ++ +G      R +          +  +  +  K   
Sbjct: 582 PPGTSLATSNDISSRVETRLREIEDIEGFIRRTGRAELDEHAEGVNMSEFILELDPKSPR 641

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                  +  E +          +  +  +IS
Sbjct: 642 SREEQLEEIREAMADIPGIVTAVEQPIAHLIS 673



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 6/220 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              R ++   V+    S  + +       G    L   +    D+   T  +     ++ 
Sbjct: 261 QIARVIEGPQVKRGDSSAWVRNEDGHYSGGPAVILTINKQPGADTRRVTEDVMAAIDELR 320

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLIL 702
             +P                  I   +  +    I ++I +             +T + L
Sbjct: 321 PSLPGDLRIEPLYTQKSFIDRAIENVVEALRDGGILVVIILFLFLMNVRTTFITLTAIPL 380

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTTSISFR 758
            +  T   F++FG+  N   +  +   IG  V+D +V    +Y R+++N           
Sbjct: 381 SLVMTAIVFSIFGLSINTMTLGGLAVAIGELVDDAIVDVENIYRRLKENRGSDNPKHPLL 440

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            +   SI E     V+ +M   +  LP+    G     FA
Sbjct: 441 VVFRASI-EIRNSIVFGTMIVILVFLPLFALSGMEGRLFA 479



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 25/211 (11%), Positives = 80/211 (37%), Gaps = 8/211 (3%)

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
                   V++ ++KK+  IV             +   +     ++GV+ +   + +++ +
Sbjct: 831  SERGVVDVVQDIQKKVQPIVESLPPGYFVQYSGQFESQQSASRVIGVLFAVSLVGVFLVL 890

Query: 687  R---FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
                     +L  +  L +    ++    + G    + A+   ++L G +  + +++ + 
Sbjct: 891  YTMFRSVNLSLQVMMALPMAFIGSVAALVITGQTLTVAAMVGFISLAGIASRNGILLLNH 950

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF----AI 799
               ++  +      +++I ++  E L   + T++ + I ++P+ +  G          A 
Sbjct: 951  YL-HLVKHEGEDWTKEMIVRAGLERLAPVLMTALTSGIGLVPLVMAAGEPGKEILYPVAT 1009

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +  G++ +     F+   +   I    A+ 
Sbjct: 1010 VILGGLISSTLLDFFVHPALFWLIGLKSAER 1040


>gi|254559837|ref|YP_003066932.1| Heavy metal efflux pump CzcA [Methylobacterium extorquens DM4]
 gi|254267115|emb|CAX22932.1| Heavy metal efflux pump CzcA (precursor) [Methylobacterium
           extorquens DM4]
          Length = 1047

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 75/609 (12%), Positives = 175/609 (28%), Gaps = 51/609 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   ++ + S++   G          +  +D FP                   ++ E 
Sbjct: 10  LKNRLLVLAIASVLVLFGAFTV-----TKLPVDVFPDLNRPT-----------VTIMTEA 53

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           +      V   +    +   + L              + + + F           ++   
Sbjct: 54  EGYAPPEVEQLVTYPIETRMNGLPGVSRVRSVSGVGLSIVYVEFDWGTDIYRNRQQIAER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L  V  +L       +   ++     ++++  +         E +  +IR    ++    
Sbjct: 114 LSLVQDQLPRGVTPVMGPISSIMGQILLVAVTSETATPMQVREAADFVIR---PRLLTIP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q +     + Q     +P+ +R L  T A++         +  G             
Sbjct: 171 GVAQVIPIGGEVRQFRVAPNPAAMRTLGVTNAQLEASLQQFGTNAGGGFTDQNAREYLIR 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           N     D  ++  + +               V            ++     I        
Sbjct: 231 NIARTLDLDDLRNVVVTTVNNTPVYLRQIAEVSFGARVKRGDAGYQGKPAVIVSVEKQPD 290

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              V     I QA                   L  + +     IK + +  R       S
Sbjct: 291 VDTVKLTGQIQQA-------------------LGEITQTLPDGIKADQILFRQANFIETS 331

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            S  +        +V  VLF+ +L  +   ++  +I ++++ T  +  L G ++   ++ 
Sbjct: 332 ISNVERVLLEAIVVVAAVLFLFLLNVRTTAISLLAIPVSILTTAVVFHLFGLSINTMTLG 391

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALI 472
           G+ + IG  VD  ++  E I     +N+      SVF  +    +   S I  + +  ++
Sbjct: 392 GLAIAIGELVDDAVVDVENIFRRLGENRKAGNPKSVFQVVVEASNEVRSGIVYATMIIIL 451

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR--YKKMKSIDINP 527
             V LF      G           +SIL S+ T+I++   +  +++       +      
Sbjct: 452 VFVPLFALSGIEGRLFAPLGQAYIISILASLVTSITLTPVLASWLLPGLKNLEEHDSRFL 511

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +   F   R     +++      +              +G   + +  N 
Sbjct: 512 KLLKRGNAALLRGAFRHQRLLVGMVAVAVLGAGVAAWQLPRAFLPPFNEGSFTVNMTFNP 571

Query: 588 PVDLSVVRS 596
            + L+    
Sbjct: 572 GISLAESNR 580



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 11/210 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +         Q  + E+ +     I     +             + R  +  +++ A  +
Sbjct: 291 VDTVKLTGQIQQALGEITQTLPDGIKADQILFRQANFIETSISNVERVLLEAIVVVAAVL 350

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++           ++  + + I  T   F LFG+  N   +  +   IG  V+D VV 
Sbjct: 351 FLFLL---NVRTTAISLLAIPVSILTTAVVFHLFGLSINTMTLGGLAIAIGELVDDAVVD 407

Query: 740 ---VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
              ++ R+ +N +      S   ++ ++ NE     VY +M   +  +P+    G     
Sbjct: 408 VENIFRRLGEN-RKAGNPKSVFQVVVEASNEVRSGIVYATMIIILVFVPLFALSGIEGRL 466

Query: 797 FAI---PMAFGIVVAASSSIFIAAPILLFI 823
           FA         I+ +  +SI +   +  ++
Sbjct: 467 FAPLGQAYIISILASLVTSITLTPVLASWL 496


>gi|325525434|gb|EGD03258.1| hydrophobe/amphiphile efflux-1 (HAE1) family protein [Burkholderia
           sp. TJI49]
          Length = 355

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 35/380 (9%), Positives = 82/380 (21%), Gaps = 37/380 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  ++   G+            + ++P+  P               + +  + 
Sbjct: 8   RPIFAWVIAIILMLAGVAAIF-----TLPIAQYPTIAPP-------------SIQITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  ++      +   +        +   S       ITL+FA     +    +V  
Sbjct: 50  PGASAKTVEDTVTQVIEQQMSGLDNFLYMSSTSDDSGNATITLTFAPGTNADIAQVQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L    ++  L  T      +++   N +    +  + +  +     D I   
Sbjct: 110 KLSLATPILPQVVQQLGLSVTKSSSSFLLVLAFNSEDGSMNKYDLANYVASHVKDPISRL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+RL     T   ++      N    G   G    +   
Sbjct: 170 NGVGTVTLFGSQ-YAMRIWLDPTRLTNYGLTPVDVTTAITAQNVQIAGGQIGGTPAKPGT 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  + +   +                 +    +        +        IG      
Sbjct: 229 VLQATITESTLL-------------QTPEQFGNILLKVNQDGSQVRLKDVAQIGLGGENY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +   T +        L        +             
Sbjct: 276 NFDTKYNGQPTAALGIQLATNANALATAKAVRAKIDELTPYFPHGLVVKYPYDTTPFVKL 335

Query: 358 SDSIYKGTCAIVAGLVLIVL 377
           S      T      LV +V+
Sbjct: 336 SIEEVVKTLLEGIVLVFLVM 355


>gi|317151746|ref|YP_004119794.1| acriflavin resistance protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316941997|gb|ADU61048.1| acriflavin resistance protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1073

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 78/667 (11%), Positives = 201/667 (30%), Gaps = 40/667 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R   ++ +L+ ++   G+            ++R+P       I             L  
Sbjct: 18  LRQKVFVNLLFVVLTVAGVFCMF-----SLPVERYPDVRMGKVI---------VSAFLPG 63

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D +   +    ++    L+          + +  I + F D    + + D++   + 
Sbjct: 64  ASPDEMEMLVTRKIEDALEDLENVEFIRSRSFRQRASILVKFLDDTDYDKLYDELRFKVL 123

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L  +         +  E   V+S N + +  + A+    E ++     +      
Sbjct: 124 SIQNDLPSNMDPPTFTVISVNEWLPVISVNLVGERSNRALTLMAEEMKI---PLQRIPGV 180

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +         +     DP ++ +L  T  + +      N S     F            
Sbjct: 181 KEVKIEGEYTREFHVSLDPGKMMRLGVTFDEAAKALEAANVSVPAGDF------------ 228

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                 V  SG ++      F  +       I  D  G+                     
Sbjct: 229 ------VSDSGEYVIVVDEKFRSRDAVAATIIRRDLDGSFVTVGDVMSRAAMDYRDPFVI 282

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +              + +          + A          +  V  ++   ++  + 
Sbjct: 283 SSVNGRDSVSIKIIKTPEGNALDIGAAVEGVVADFHGLLAREGVESVLSQDQRVNINENI 342

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
              G+  +V  +++ V   +V+  +  ++    +  + ++T+ ++ L G ++   ++   
Sbjct: 343 NTLGSNLLVGIVLVCVCIWVVMGFRNAMLTTVGVPFSFMVTMVIMQLTGNSINEITLFSF 402

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  G+ VD  I+V E I    ++ + +  ++  G S  +  +  +  T + A + +   
Sbjct: 403 VLVSGIIVDDAIVVVENIYRHVQEGKRLAQAVVEGTSEVFLPVLAATSTTVAAFLPMLIM 462

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G     FA+         + + I  +  + +  + +   K ++ +  +      D   +
Sbjct: 463 TGSIGEFFALVPKAVTFALIASLIECLFILPLHFLDWPGAKRLEADARTHSRRATDPRFL 522

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
             +R      G  +L ++       T G+ +G      I L V     V L  ++   + 
Sbjct: 523 VAIRQ-----GADVLLALSMRHKWKTMGVVFGAFVVAVIMLVVSVTGAVPLLRIKFFPDE 577

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
             +  +S +   G    +   + +              K                I G  
Sbjct: 578 YTLYYVSMEGPVGTDVRVASEKAKEVSRAIADFGPGTTKSCSALGGMDINEDYENIFGSN 637

Query: 661 ISRELIR 667
            +  ++ 
Sbjct: 638 RAIVIVE 644



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 6/237 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+ ++      IS  N     +  +    +         V  +V      +         
Sbjct: 271 RAAMDYRDPFVISSVNGRDSVSIKIIKTPEGNALDIGAAVEGVVADFHGLLAREGVESVL 330

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                    E I      +++  + + + IW+   +  A+     +      T+    L 
Sbjct: 331 SQDQRVNINENINTLGSNLLVGIVLVCVCIWVVMGFRNAMLTTVGVPFSFMVTMVIMQLT 390

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N   + + + + G  V+D +VV + +    +           + +  +E     + 
Sbjct: 391 GNSINEITLFSFVLVSGIIVDDAIVVVENI---YRHVQEGKRLAQAVVEGTSEVFLPVLA 447

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAI---PMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +     + LPM +  GS+   FA+    + F ++ +    +FI     L     + 
Sbjct: 448 ATSTTVAAFLPMLIMTGSIGEFFALVPKAVTFALIASLIECLFILPLHFLDWPGAKR 504


>gi|240137072|ref|YP_002961541.1| efflux transporter (AcrB/AcrD/AcrF family multidrug efflux pump
           [Methylobacterium extorquens AM1]
 gi|240007038|gb|ACS38264.1| efflux transporter (AcrB/AcrD/AcrF family multidrug efflux pump
           [Methylobacterium extorquens AM1]
          Length = 1031

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 72/526 (13%), Positives = 163/526 (30%), Gaps = 25/526 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
             +         +   +  + ++  + ++       ++ +  +  T+ F      +   +
Sbjct: 49  VTITQGGAAPSELQTQVTKWVEDSIAGVRGVKHITSAITEGASVTTVEFRLEVNTDRAVN 108

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  +   L     + ++       + I++       +     + S  +  +    
Sbjct: 109 DVKDAVSKIRINLPRTIDEPVIQRVEITGLPILIYGVTSPAMTPA--DLSWFVEDKVART 166

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +          +  ++     P RL  L  T A ++    + +    G    V   
Sbjct: 167 LQGVKGVGGVERVGGVAREIRITPLPDRLLALGITAADVNKQVRVTSADLAGGRGEVGGR 226

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S           ++    +                       G R+        +   
Sbjct: 227 EQSIRTLAASRTIRDLKATSIVLP--------------------GGRKVRLDDLATVEDS 266

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +             +     S  +  S            A    G   I+     + +V 
Sbjct: 267 IEEPRTFARFNGESVVAFSVSRGSGASDAEVAAGVEKKIAEFAQGYPDIQF-QEIDSSVA 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A  GS +    T    A L +IV+F+ +   +  L+A  ++ L+V+ T   +  LG TL 
Sbjct: 326 ATRGSYASAMHTLMEGAALAVIVVFLFLRDWRATLIAAVALPLSVLPTFWAMDALGFTLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  I L  G+ VD  I+  E +    R  +S + +   G       +     T +  
Sbjct: 386 GISLLAITLVTGILVDDAIVEIENVVRHMRMGKSPYRASIEGADEIGLAVIAITATLIAV 445

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              + F GG A R F I  GL+I +S+F ++ + R +   +  Y  ++           +
Sbjct: 446 FAPVSFMGGIAGRYF-IQFGLTIAVSVFMSLLVARLITPLLAAY-FLRDHGHAEEREGPV 503

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           +     +     R   + + +  ++ +  ++ T  L  G   K   
Sbjct: 504 MRAYTRLVGWSVRHKWITLMVGLALFAGSIVSTKLLPSGFIPKQDN 549



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 74/249 (29%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +   R V L  + +  +S++      +            +            +E   
Sbjct: 246 SIVLPGGRKVRLDDLATVEDSIEEPRTFARFNGESVVAFSVSRGSGASDAEVAAGVEKKI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +  +  P    Q  +                 +  +A+A+++       W   L A   
Sbjct: 306 AEFAQGYPDIQFQEIDSSVAATRGSYASAMHTLMEGAALAVIVVFLFLRDWRATLIAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T       G   N  ++ A+  + G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSVLPTFWAMDALGFTLNGISLLAITLVTGILVDDAIVEIENV---VRHMRMGKSPYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIA 816
              +  +E     +  +        P++  GG        F + +A  + ++   +  I 
Sbjct: 423 ASIEGADEIGLAVIAITATLIAVFAPVSFMGGIAGRYFIQFGLTIAVSVFMSLLVARLIT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PLLAAYFLR 491



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 80/215 (37%), Gaps = 7/215 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V ++     S A   ++E      T       +   +    +I +E+    ++ +
Sbjct: 789  DRAVRVAVEANMEGSDALGSLIEQALATPTAKSLPPGVTIRQTGDAEIMQEVFSGFLMAM 848

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L I   +    +  +  ++  V  +L L+G 
Sbjct: 849  GAGIMMVYAVLVLLFGSFLQPLTILFSLPLSIGGAILGLLICHMPISMPVVIGLLMLMGL 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAVEEMA---RGVDRVTAIVDAGRKRARPIVMTTIAMAAGMVPSAMALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            GG      A+ +  G++V+   S+     + L + 
Sbjct: 966  GGEFRAPMAVAVIAGLIVSTLLSLVFVPAVFLLMD 1000


>gi|188579734|ref|YP_001923179.1| acriflavin resistance protein [Methylobacterium populi BJ001]
 gi|179343232|gb|ACB78644.1| acriflavin resistance protein [Methylobacterium populi BJ001]
          Length = 1031

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 70/526 (13%), Positives = 160/526 (30%), Gaps = 25/526 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
             +         +   +  + ++  + ++       ++ +  +  T+ F      +   +
Sbjct: 49  VTITQGGAAPSELQTQVTKWVEDSIAGVRGVKHITSAITEGSSVTTVEFRLEVNTDRAVN 108

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  +   L     + ++       + I++       +     + S  +  +    
Sbjct: 109 DVKDAISKIRINLPRTIDEPIIQRVEITGLPILIYGVTSPAMTPA--DLSWFVEDKVART 166

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +          +  ++     P RL  L  T A ++    + +    G    V   
Sbjct: 167 LQGVKGVGGVERVGGVAREIRITPLPDRLLALGITAADVNRQVRVTSADMAGGRGEVGGR 226

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S           ++    +                       G R+        +   
Sbjct: 227 EQSIRTLAASRTIRDLKATSIVLP--------------------GGRKVRLDDLATVEDS 266

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +             +     S  +  S                     I    ++  +V 
Sbjct: 267 IEEPRTFARFNGEPVVAFSVSRGSGASDAEVAAAVEKKIGEFAESYPDIAFKEIDS-SVA 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A  GS +    T    A L +IV+F+ +   +  L+A  ++ L+V+ T   +  LG TL 
Sbjct: 326 ATRGSYASAMHTLMEGAALAVIVVFLFLRDWRATLIAAVALPLSVLPTFWAMDALGFTLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  I L  G+ VD  I+  E +    R  +S + +   G       +     T +  
Sbjct: 386 GISLLAITLVTGILVDDAIVEIENVVRHMRLGKSPYRASIEGADEIGLAVIAITATLIAV 445

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              + F GG A R F I  GL+I +S+F ++ + R +   +  Y  ++           +
Sbjct: 446 FAPVSFMGGIAGRYF-IQFGLTIAVSVFMSLLVARLITPLLAAY-FLRDHGHAEEREGPI 503

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           +     +     R   + +    ++ +  ++ T  L  G   K   
Sbjct: 504 MRAYARLVGWSVRHKWITLMAGLALFAGSIVSTKLLPSGFIPKQDN 549



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 74/249 (29%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +   R V L  + +  +S++      +            +            +E   
Sbjct: 246 SIVLPGGRKVRLDDLATVEDSIEEPRTFARFNGEPVVAFSVSRGSGASDAEVAAAVEKKI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +  E  P    +  +                 +  +A+A+++       W   L A   
Sbjct: 306 GEFAESYPDIAFKEIDSSVAATRGSYASAMHTLMEGAALAVIVVFLFLRDWRATLIAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T       G   N  ++ A+  + G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSVLPTFWAMDALGFTLNGISLLAITLVTGILVDDAIVEIENV---VRHMRLGKSPYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIA 816
              +  +E     +  +        P++  GG        F + +A  + ++   +  I 
Sbjct: 423 ASIEGADEIGLAVIAITATLIAVFAPVSFMGGIAGRYFIQFGLTIAVSVFMSLLVARLIT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PLLAAYFLR 491



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 82/215 (38%), Gaps = 7/215 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V ++     S A   ++E      T       +   +    +I +E+    ++ +
Sbjct: 789  DRAVRVAVEANMEGSDALGSLIEQAMATPTAKNLPPGVTIRQTGDAEIMQEVFSGFLLAM 848

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L I   +    +  +  ++  V  +L L+G 
Sbjct: 849  GAGIMMVYAVLVLLFGSFLQPLTILFSLPLSIGGAILGLLICHMPISMPVVIGILMLMGL 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M+     ++    I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAVEEMRAGVDRVT---AIVDAGRKRARPIVMTTIAMAAGMVPSAMALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            GG      A+ +  G++V+   S+     + L + 
Sbjct: 966  GGEFRAPMAVAVIAGLIVSTLLSLVFVPAVFLLMD 1000


>gi|153826696|ref|ZP_01979363.1| cation efflux system protein CusA [Vibrio cholerae MZO-2]
 gi|149739483|gb|EDM53717.1| cation efflux system protein CusA [Vibrio cholerae MZO-2]
          Length = 1041

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 69/591 (11%), Positives = 163/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++      + +D  P       I                  
Sbjct: 11  NNRFLVLIATLFLTLGGLYSVKM----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   E   +
Sbjct: 118 APKLPANAKPTLGPDATGVGWIYSYV-LQDKTGKHDLAQLRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 IATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    V +   + G         D    P         
Sbjct: 237 LTSIEDI------------------QSVPLKVTDKGTPLLLGDIADINIGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+      A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVEIVSTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    ++ IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVLAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQMIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLSEHKNPVNRGLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++     + +++     +       G  +      G  + +   
Sbjct: 519 RPLLNLSLKYPKSMIVLALGLMASAYYPTSQLGSEFIPPLDEGDLMYMPTT 569



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 71/217 (32%), Gaps = 13/217 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D+++       +   +   +   G                 + ++ E+ +     + 
Sbjct: 261 DIADINIGPQMRRGISEFNGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVE 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            +ST   + ++   +     +     ++++ +  L      F    +L    +L + I  
Sbjct: 321 IVSTYDRSTLINAAVENLWKKLAEEFIVLAIVCAL----FLFHIRSSLVIALSLPVGILS 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LI 761
                   GI  N+ ++  +   IG  V+  +V+     +N+  +       D     +I
Sbjct: 377 AFIVMHWQGINANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQMI 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            K+  E      ++ +   +S +P+    G     F+
Sbjct: 433 GKAAEEVGAPLFFSLLIITLSFVPVFALEGQEGKMFS 469



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 27/257 (10%), Positives = 70/257 (27%), Gaps = 15/257 (5%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             + + +     +    +        E        +   D       ++  ++ +   + L
Sbjct: 784  PNGARIALADVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGTYVQEAQQAVANQLAL 843

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                     G     E  ++ +  V+   IA+++ +            I    L +    
Sbjct: 844  PAGYALTWSGQYEYMERAKERLSVVVPITIAIIMLLLYFSFRRVGEVLIIMATLPLAMVG 903

Query: 709  G--FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR----------KNMKLYTTSIS 756
            G           ++      + L G +V   V++   +           +      +   
Sbjct: 904  GLWLMHYLNYNLSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHCKKLDAEENHQPLSMKD 963

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
              + I +     +   + T +   I ++P+      G  V+   A PM  G+  A   ++
Sbjct: 964  LTEAIREGAGLRVRPVMMTVLTVIIGLIPIMYGEGTGSEVMQRIAAPMIGGMASALLLTL 1023

Query: 814  FIAAPILLFIYDWRAKN 830
             +   I           
Sbjct: 1024 LVLPAIFKLWKSKELPK 1040


>gi|327405714|ref|YP_004346552.1| acriflavin resistance protein [Fluviicola taffensis DSM 16823]
 gi|327321222|gb|AEA45714.1| acriflavin resistance protein [Fluviicola taffensis DSM 16823]
          Length = 1050

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/585 (10%), Positives = 160/585 (27%), Gaps = 41/585 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +V++++++  +G++        +   +  P                         
Sbjct: 9   KRPSLIVVIFAVLGFLGIIS-----YSKLNYELMPKFSIPVVT---------VTTAYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++  S ++       +  +  + I L   +    +    +    +  
Sbjct: 55  SPSEVENSVTKKIEDALSGVENLDDIQSTSMEGISSIVLMLKNDADPDKALQEAQRKINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L  +     L   +  E  I+      +       E    I  +    +   E   
Sbjct: 115 MLSTLPEEILSPSLGKFSFDEAPIMNVGVTAN---MPPTELYSLIKDEISPSLAKMEGMA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++  + +         +  +++      N             +     + 
Sbjct: 172 QVTMVGGEEREIKVQVNREACSNYGISILQITNAIRSANLELPTGKIKSDDSQALVRLRG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +D  E++                   + I  D              +      +    
Sbjct: 232 KYKDLSELNN------------------LVILSDPKTGSPVRLNEVATVSDASKEIKTFN 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR-AGSLPIKLNIVEERNVGADLGSDS 360
            +        +   +   +     +        L            V   +    + +  
Sbjct: 274 RINGTNSLGLLIQKQTDANAVSLSKKVRAEFKELEIQYKKQGMKFEVASDSSDFTIAAAD 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   +V +V+ + +   +   +   SI  ++I     + LLG T+ L ++  I
Sbjct: 334 AVVVDLGLAIFIVALVMLLFLHSVRNAFIIMISIPASLISVFIAMYLLGFTMNLMTLLAI 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD +I+V E I       +    +   G +    T     +  ++  + L   
Sbjct: 394 SLVVGILVDDSIVVLENIYRHLEMGKERKKAALEGRNEIGFTAMGITLVDVVVFLPLTMV 453

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIP 535
           GG     +  F++ + +S L+S+F + ++   +            K++    +  F  + 
Sbjct: 454 GGLISNLLSQFSLVIVISTLMSLFVSFTLTPLLASRFAKETKLNNKTLGGRIVMAFEGVL 513

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
             I   + R     +       I +   +    +  G    G   
Sbjct: 514 KRITTSYGRTLTVALRRKRYIVIAAFLGIIGIPVLLGPYIGGEFV 558



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 85/264 (32%), Gaps = 15/264 (5%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + +   +      +                        + L  Q         + + 
Sbjct: 240 NNLVILSDPKTGSPVRLNEVATVSDASKEIKTFNRINGTNSLGLLIQKQTDANAVSLSKK 299

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII-----SAIAMLIYIWIRFKWYF 692
           V+ +  E+      Q  +      S +        V++       I  L+ +        
Sbjct: 300 VRAEFKELEIQYKKQGMKFEVASDSSDFTIAAADAVVVDLGLAIFIVALVMLLFLHSVRN 359

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           A   + ++   +        L G   NL  + A+  ++G  V+D +VV + +    +   
Sbjct: 360 AFIIMISIPASLISVFIAMYLLGFTMNLMTLLAISLVVGILVDDSIVVLENI---YRHLE 416

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAA 809
                +    +  NE    ++  ++   +  LP+ + GG   +++  F++     IV++ 
Sbjct: 417 MGKERKKAALEGRNEIGFTAMGITLVDVVVFLPLTMVGGLISNLLSQFSLV----IVIST 472

Query: 810 SSSIFIAAPILLFIYDWRAKNARI 833
             S+F++  +   +    AK  ++
Sbjct: 473 LMSLFVSFTLTPLLASRFAKETKL 496



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 82/256 (32%), Gaps = 8/256 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V         +  S   ++       +     +   + +  Q   + +Q    E  +  
Sbjct: 778  EVYFINDRGEEIKLSQFATIGKASGPSKLERKNRVPSITVTSQALGTSSQQVTTEFAQMM 837

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              + +P +T    E     ++       +  +       LI + +   + +    + ++ 
Sbjct: 838  EKDPLPSNTAYTFEGDAKNMAEAFGNLLLAILASILFVYLIMVALYDSYVYPFVVLFSIP 897

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            L I   L   AL     ++ ++  ++ LIG    + +++ D      +      +  + +
Sbjct: 898  LAIIGALLALALAMEPISIFSMLGMIMLIGLVAKNAILIVDF---TNQKKADGHNTVEAL 954

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +    L   + T++A    ++P+A     G       A  +  G+  +   ++ I   
Sbjct: 955  IIAGQARLRPILMTTLAMVFGMMPIAFAHGAGAEWKSGLAWVLIGGLTSSMLLTLIIVPC 1014

Query: 819  ILLFIY--DWRAKNAR 832
            + L          N +
Sbjct: 1015 VYLIFDIFKREISNKK 1030


>gi|82702242|ref|YP_411808.1| heavy metal efflux pump CzcA [Nitrosospira multiformis ATCC 25196]
 gi|82410307|gb|ABB74416.1| Heavy metal efflux pump CzcA [Nitrosospira multiformis ATCC 25196]
          Length = 1040

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 73/681 (10%), Positives = 184/681 (27%), Gaps = 50/681 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE------D 63
           L  ++  +GL+ A  +   +  +D FP                 +++ ++V         
Sbjct: 14  LIVVVIALGLVAAGMHASTKLSVDAFPDV---------------TNVQVQVATEAPGRSP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + +   + +  +   + L          +   + ITL F D          V   L  V 
Sbjct: 59  EEIERIVTVPVEIAMTGLPGLVEMRSLNKSGISLITLVFTDQTDVYFARQLVMERLLEVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI-----SHAIEQSMEIIRQRIDQIGISE 178
           SK+       L   TT        +  + D             +           +   +
Sbjct: 119 SKMPPGITPVLGPVTTGLGEVYQYTLEHPDDGKKALSVEELTRRRTIQDWVVRPLLRSVQ 178

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +       + Q     +P RLR    T A++       N +  G +  +   +    
Sbjct: 179 GVAEINSQGGYVKQYHVLVNPDRLRHYDLTLAQVDQAIASNNANSSGNLLPLHAEQYLIR 238

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              L++   +I  I L               V    +            +++        
Sbjct: 239 GVGLIQSLDDIRNIVLKEVDGVPVFVRDVAEVKFGAEVRQGASIKGGYTESV-------- 290

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                        +               A +     R         +           +
Sbjct: 291 ---------AAIVMMLRGGNAKEIVGRIKAKVAEINDRKLLPGGLQIVPFYDRTDLVDAA 341

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                        LV++VLF+ +   +  L+   ++ +  ++T  +++    +  L S+ 
Sbjct: 342 LWTVSKVLMEGIFLVVVVLFIFLGDVRSSLIVVATLIITPLITFMVMNQQEISANLMSLG 401

Query: 419 GIVLGIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           G+ + IGL VDS ++V E +           +S   S+        + +       ++  
Sbjct: 402 GLAIAIGLMVDSTVVVVENVYHRLGHASGTRESKLQSILDAVVEVGTPVIFGICIIILVF 461

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + L       G      A+T+ +++ +S+  ++++   +  +I++    K   I    + 
Sbjct: 462 LPLMALQGMEGKMFSPLALTIAIALAVSLIVSLTLSPVLCAYILKGGADKDTRIIAFLKK 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                  +            I +L    S+  L        +       + +        
Sbjct: 522 AYHRLLNSALAHEKITILTAIGLLALSFSLFPLLGKSFIPTMQEGSITPVIIRVPSISLD 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             +    E++ +                        S  ++  +  +  +          
Sbjct: 582 EAIEIESEAMALIAAVPGVKTVVSKLGRGESPADPASQNESDPIAALDPESGRTQAEVEE 641

Query: 652 QNTEIVGPKISRELIRKGIVG 672
              +++       ++    + 
Sbjct: 642 DIRKVLTVLPGVSIVLSQPIA 662



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/165 (18%), Positives = 62/165 (37%), Gaps = 6/165 (3%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I  + ++++I        +L  + TLI+    T        I  NL ++  +   IG  
Sbjct: 352 GIFLVVVVLFI-FLGDVRSSLIVVATLIITPLITFMVMNQQEISANLMSLGGLAIAIGLM 410

Query: 734 VNDKVVVYDRM-RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           V+  VVV + +  +      T  S    I  ++ E     ++      +  LP+    G 
Sbjct: 411 VDSTVVVVENVYHRLGHASGTRESKLQSILDAVVEVGTPVIFGICIIILVFLPLMALQGM 470

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNARI 833
               F   A+ +A  + V+   S+ ++  +    +     K+ RI
Sbjct: 471 EGKMFSPLALTIAIALAVSLIVSLTLSPVLCAYILKGGADKDTRI 515



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/143 (19%), Positives = 55/143 (38%), Gaps = 9/143 (6%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            IV + I+AI  L+++         L  +      I   +G F + G   ++ A    + L
Sbjct: 881  IVPLTIAAIFFLLFVLFNSIKLAGLIILVLPFASIGGVIGLF-VTGEYLSVPASVGFIAL 939

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
             G +V + VV+   +R   KL     S  + + K   +     + T     +  L   ++
Sbjct: 940  WGIAVLNGVVLISYIR---KLREQGASVAESVIKGCEQRFRPVLMT-ATVAMLGLIPFLF 995

Query: 790  ----GGSVIGSFAIPMAFGIVVA 808
                G  V    A+ +  G++ +
Sbjct: 996  ATGPGSEVQRPLAVVVIGGLITS 1018


>gi|121609247|ref|YP_997054.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
 gi|121553887|gb|ABM58036.1| acriflavin resistance protein [Verminephrobacter eiseniae EF01-2]
          Length = 1089

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 64/556 (11%), Positives = 158/556 (28%), Gaps = 38/556 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+L   +   G+       +       +P+                    +   
Sbjct: 9   QRPVATVLLTVGVALAGMAAFFVLPVAPLPQVDYPAIS--------------VSASMPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +               +++L F   R  +  A  V   +  
Sbjct: 55  SPETMASTVTTPLERRLGLIAGVNEMTSVSANGTARVSLQFDLDRDTDAAARAVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L    + N +        +  +    +        +           ++   +   
Sbjct: 115 ARVDLPATLRSNPVYRKRSNAATPAII-LALTSRTRTPGQIYDAASNIVNQRLSQVDGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E  P  L +   +   +       N  +                  
Sbjct: 174 EVEIGGGSLPAVRVELLPLALSRYGISAEDVRAAIQAANADRP----------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +  +E SG  L   T     +  +    +     GA          +   +       
Sbjct: 217 --KGAIEGSGRRLQVYTPQPARQAAQYESLVIAWRNGA-AVRLGDVARLEDGVENNRTLG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         + + + Q +    ++    L   L+A         V   +  +   S   
Sbjct: 274 LFNGQPAIIVLVTRQPQANIIEMVDAVRALLPDLQAQLPQDITLDVVSDSTRSIRSSLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+ + +   +  L+   +  ++++ TL L+ LLG  L   S+  + 
Sbjct: 334 IELTLLLSLVLVVLVVGLFLRQLRAALIPAVATVVSLLGTLGLMYLLGFGLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  +D  I+V E              +   G      T+   +++ +   + L F  
Sbjct: 394 VATGFVIDDAIVVLENTTRHIEAGIDRMQAALQGAREVGFTVLSISLSLVAVFIPLLFMD 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R FAIT+  +++IS+  +++    M  +++  +        P SR     +  
Sbjct: 454 GQVGRLFREFAITLSAAVMISLLVSLTTTPMMCAWLLPNRAHDPTRDPPPSRLARWAERG 513

Query: 539 AIQFMRARFWGVGISI 554
               +R     +  ++
Sbjct: 514 YQWVLRGYAHSLDWAL 529



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 52/139 (37%), Gaps = 7/139 (5%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            +   AL      ++ +  TLG   L G   +  ++ A+    G+ ++D +VV +     
Sbjct: 354 RQLRAALIPAVATVVSLLGTLGLMYLLGFGLDNLSLMALTVATGFVIDDAIVVLEN---T 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
            +     I       +   E     +  S++     +P+    G V      FAI ++  
Sbjct: 411 TRHIEAGIDRMQAALQGAREVGFTVLSISLSLVAVFIPLLFMDGQVGRLFREFAITLSAA 470

Query: 805 IVVAASSSIFIAAPILLFI 823
           ++++   S+    P++   
Sbjct: 471 VMISLLVSL-TTTPMMCAW 488


>gi|51573478|gb|AAU07503.1| protein-export membrane protein [Borrelia garinii PBi]
          Length = 556

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 90/211 (42%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +  +   +  K         I +  I+GP +  + +  GI    ++   
Sbjct: 335 NVSIQGDSFDKKEALDLALVFKTAAFPVDIKIDDLRIIGPTLGAKTVDLGIKSSALALCL 394

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++ I +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 395 VFLFMCIYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 454

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 455 IYERIKEEIREGRK---FENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 511

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL  I   R   
Sbjct: 512 SLSVGIVASLFSSLIFSRFILELIISARKSK 542



 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 125/497 (25%), Positives = 218/497 (43%), Gaps = 53/497 (10%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              I LGLDL GG  + + +D         +                            L
Sbjct: 103 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRS---------------------------L 135

Query: 101 SFADSRF-KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +FA+       I   +   +           ++                           
Sbjct: 136 TFAEKEDAIYRIMQILKDRVDRFGLTEPKIAREAGGNKIF-------------------- 175

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           ++   E    R+  +   +  +        L  L  ++          +  + + +    
Sbjct: 176 LDIPGEKDESRVSTLLSGKGNLTFYVVDDELTSLLHKKILEAGSLFSISEIQKNMNLPDS 235

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVE---ISGIHLNGATANFDPKTHKPVVDISFDE 276
                 ++     + D    +Y V D        G H+  A  + DP+T + +V  + D 
Sbjct: 236 KQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDGAHIKDAGVSNDPRTGRDIVAFNLDV 295

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGILAAML 335
            G+ +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + A  LA + 
Sbjct: 296 DGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEALDLALVF 355

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           +  + P+ + I + R +G  LG+ ++  G  +    L L+ LFM + YG  G+VA FS+ 
Sbjct: 356 KTAAFPVDIKIDDLRIIGPTLGAKTVDLGIKSSALALCLVFLFMCIYYGLSGVVAGFSLV 415

Query: 396 L-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +    + + 
Sbjct: 416 IYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREGRKFENAFED 475

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++   R ++  I
Sbjct: 476 GFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRFILELI 535

Query: 515 IRYKKMKSIDINPLSRF 531
           I  +K K I I+  S++
Sbjct: 536 ISARKSKFISISWSSKY 552


>gi|297566651|ref|YP_003685623.1| acriflavin resistance protein [Meiothermus silvanus DSM 9946]
 gi|296851100|gb|ADH64115.1| acriflavin resistance protein [Meiothermus silvanus DSM 9946]
          Length = 1166

 Score =  130 bits (327), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 48/455 (10%), Positives = 117/455 (25%), Gaps = 40/455 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +    +  +   GLL A    +       FP                          
Sbjct: 13  RFVFSTAAFLTLVLFGLLAARGLGVDLLPKFEFPVVAISTA--------------YPGAG 58

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +E  S L           +  + +   F         A  V+  +  V
Sbjct: 59  PEEIESQISKPIEEALSTLSGIDQIASQSSEGFSLVIAQFKYGTSVNQAATDVSQRIAAV 118

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  D +  ++         I+    + +         +  +  Q   ++ +      
Sbjct: 119 RGQLPRDAEAPVVQKFDPAAQPILSVAVSAEG--RDLRTVADWVENQLKPRLQLVSGVAD 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+    DP +L     + +++         +           +D     Y 
Sbjct: 177 LQVEGNPKRQVQVLVDPWKLADYGLSASQVVAAVQASALAVPAGSQE----QDGQRLLYS 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + ++ + +                             R        ++    A       
Sbjct: 233 LRNQPQTAADVTRIVVDPN------------------RGLKIADVASVRDTQAEATRYTR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L+   I           +     +       +            +          + +  
Sbjct: 275 LSGQPIVLLNVRKTPDANAVAVAQGIKK--TLANTSLPSGYRVSITNDTTTFIEATVNDT 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +V G+V  ++ + +           +I + +   L +  LLG T  + S+  I++
Sbjct: 333 WKEVFLVVGVVSFIVLIFLGKLNSVFSVVLAIPITLAGALLIFGLLGFTFNIISLLAIIV 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
            +G+ VD +I+V E I    R+N S+  ++     
Sbjct: 393 AVGIVVDDSIVVAENIDRYRRQNYSLPDAVMKATK 427



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/177 (12%), Positives = 59/177 (33%), Gaps = 8/177 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL 713
               G   + +L     +   +S +   + I  +F  + + L  +  + L +        L
Sbjct: 977  STGGTAFASDLFEALPIAFGLSVLLNYLVIASQFNAFRYPLYLLVPIPLALVGAFWALFL 1036

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            F    ++ +V  ++ L G    + +++ D                D + ++    L   +
Sbjct: 1037 FRSGLDVVSVLGLVLLNGLVTKNAILLLD----FAVRQAREKPLFDALVEAARLRLRPIL 1092

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             T++   I  +P+ +    G        I +  G+  +   ++F+           R
Sbjct: 1093 MTTLTVLIISIPLILASGEGSEFRKPLGIIILGGVTTSTFLTLFVVPAAFYLFERRR 1149



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 67/207 (32%), Gaps = 12/207 (5%)

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            N         ++ V  NR + ++ V S  ++        +        ++    +  D+
Sbjct: 234 RNQPQTAADVTRIVVDPNRGLKIADVASVRDTQAEATRYTRLSGQP--IVLLNVRKTPDA 291

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIR 687
            A      + K      +P     +            +      V +    +  I +   
Sbjct: 292 NAVAVAQGIKKTLANTSLPSGYRVSITNDTTTFIEATVNDTWKEVFLVVGVVSFIVLIFL 351

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRM 744
            K       +  + + +   L  F L G  FN+ ++ A++  +G  V+D +VV    DR 
Sbjct: 352 GKLNSVFSVVLAIPITLAGALLIFGLLGFTFNIISLLAIIVAVGIVVDDSIVVAENIDRY 411

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGR 771
           R        + S  D + K+    L R
Sbjct: 412 R------RQNYSLPDAVMKATKGFLSR 432


>gi|331268912|ref|YP_004395404.1| RND efflux transporter [Clostridium botulinum BKT015925]
 gi|329125462|gb|AEB75407.1| RND efflux transporter, putative [Clostridium botulinum BKT015925]
          Length = 1020

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 56/590 (9%), Positives = 162/590 (27%), Gaps = 40/590 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  +I   GL                P A       L +   GG+         + V   
Sbjct: 1   MTVLILVFGL-----GIYRVIPKQENPDASVGIARVLTI-YPGGT--------PEDVKNL 46

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    ++  S +          +   + + +   D+   +    ++   +    ++L  +
Sbjct: 47  VTKKLEDAASEIDGFDYVESYSKNSVSVLIVYLKDTADDDKAWRELRDKINDKKAELPAE 106

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
              + + T       +++S +  +         + EI R+    +   E         ++
Sbjct: 107 CFPSQINTDLVSTAGMIISLSGDNYSYDQLDSYAEEINRK----LSKIEGVTSFDIDGKL 162

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+  + D  +L+    +   ++    + N          +  +         +   +I
Sbjct: 163 DKQVKVDVDMDKLKNYPISLEDVTKALKVQNVKIPPGAIESKTSKIDVITSNGFDSIKDI 222

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                               V +   E             I                   
Sbjct: 223 EN------------------VVVYVSEDSGAIVRLKDIAKIYMDYNQDDVKYKQDGKKSI 264

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 +   +     +        ++                     + S +       
Sbjct: 265 LLTGHFEDNKNVVLIGKDVRREIEKIKKTLPNDLNFYEVLYQPTDVDNAVSDFMTNLIEG 324

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV++V+F  V      +V   ++ ++++L+  ++   G  +   S   +++ +G+ VD
Sbjct: 325 IILVIVVIFAGVGVRNS-IVVSAALPISILLSFIMMHFAGIKVHQISTMALIIALGILVD 383

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR--- 486
           + I++++ ++ +  +      +   G   +   IF S +T + +   L    G   +   
Sbjct: 384 NAIVISDVVQVKINQGVDNVRAALEGAKESSIPIFTSTLTTVASFAPLLTIPGVPGKYVE 443

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
                + +S++ S   A+ I  A+     +                   + + +   + +
Sbjct: 444 SIPKVVIISLIASYICAMLITPALAAVFYKKATDAKQGKVMKKVEVFFENLLNLGLKKRK 503

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +    +  I  I         +    K  + +     +  D+     
Sbjct: 504 MTILISVGMLIIAGIIGTTLGLQFFPYANKSMMYINTSIEKKGDIKATED 553



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 23/137 (16%), Positives = 55/137 (40%), Gaps = 5/137 (3%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           F   F +     L L I    G F +F    +L A+  +++L+G  V + +++ + +   
Sbjct: 858 FMQPFIIFLTIPLSL-IGSIFGLF-IFRQPLSLMALMGIVSLVGVVVKNAILLIEYIN-- 913

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            K      S  D    ++ +     + ++    + + P+   G  +    A+ +  G++V
Sbjct: 914 -KARKEGYSLDDSCMDAMKKRFSPIILSAFTTVMGLAPIIPSGNPMFVPMAVALMCGLIV 972

Query: 808 AASSSIFIAAPILLFIY 824
           +   ++ I   +   I 
Sbjct: 973 STLLTLIIIPVLYNLIE 989


>gi|187919450|ref|YP_001888481.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
 gi|187717888|gb|ACD19111.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
          Length = 1106

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 62/550 (11%), Positives = 149/550 (27%), Gaps = 46/550 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G L        +  +   P+                  + L+ +
Sbjct: 9   RRPVATALLAFAILISGALA-----YFRLPVAPLPNIAFPV-------------IALQAN 50

Query: 62  EDDFVNGFLQMYS-DELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +     + L      +              + I + F  +R     A  V  
Sbjct: 51  MAGASPEIMAATVAEPLERRLATIADVNQLTSISYVGSSLIIVVFGLNRDINGAARDVQA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q   + L    + N          + ++   ++        +           Q+   
Sbjct: 111 AIQAARADLPTTLRSNPTYRQYNPAGAPIMV-LSLTSDTLTKAQLYDSADSVIQQQLSQI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q       L  +  E +P +L         +                         
Sbjct: 170 TGVGQITLGGGALPSVRVELEPGKLNSYGIGLEDVRAAI--------------------G 209

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                        G      T+N       P  D+                 +      +
Sbjct: 210 AANANSAKGHVDQGEQRYVVTSNDQISKAAPYRDVVIAYRDGAPVLLRDVAQVRDSNENI 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +  +         I       +   T+        ++ A         V      +   
Sbjct: 270 RNAGLYNGKSAVLVIVYPTPGSNVVQTVGQIRARLPIIEAALPSAIHVNVAIDRSESVNS 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  + T  I   LV+ V+F+ +L  +  L+   ++ L+++     + LLG ++   S+
Sbjct: 330 SVADTERTLFIAVLLVVGVVFVFLLSPRATLIPAVALPLSIVGAFGPMYLLGYSIDNLSL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             + +G G  VD  ++V E I            +   G +    T+   +++ +   + +
Sbjct: 390 MALTIGTGFVVDDAVVVLENIVRHLEAGLEPKEAALRGSAEVGFTVISMSLSLIAVFLPI 449

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
               G        FA+T+ ++I++S+  ++++   M  +++ +++               
Sbjct: 450 LLMPGIVGLLFHEFAVTLSIAIILSLIISLTVTPVMCAYLLSHERAMHSKARWARWIEAQ 509

Query: 535 PDCIAIQFMR 544
            +     + R
Sbjct: 510 FERFKQAYSR 519



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     L L I    G   L G   +  ++ A+    G+ V+D VVV + +   ++ 
Sbjct: 357 RATLIPAVALPLSIVGAFGPMYLLGYSIDNLSLMALTIGTGFVVDDAVVVLENI---VRH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
               +  ++   +   E     +  S++     LP+ +  G V      FA+ 
Sbjct: 414 LEAGLEPKEAALRGSAEVGFTVISMSLSLIAVFLPILLMPGIVGLLFHEFAVT 466



 Score = 42.8 bits (98), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 3/82 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
             ++ RD I ++    L   + T+ AA +  +P+A+    G S+     + +  G++V+  
Sbjct: 1007 GMNARDAIHEAAVVRLRPIMMTTAAAVLGAVPLAIGIGQGASLRQPLGVTVMGGLLVSQV 1066

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +++    I L++   RA+ AR
Sbjct: 1067 FTLYTTPVIYLYLDRLRARLAR 1088


>gi|319943265|ref|ZP_08017548.1| multidrug RND efflux transporter [Lautropia mirabilis ATCC 51599]
 gi|319743807|gb|EFV96211.1| multidrug RND efflux transporter [Lautropia mirabilis ATCC 51599]
          Length = 1070

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 83/590 (14%), Positives = 170/590 (28%), Gaps = 40/590 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G L        Q  +   P       +             L   
Sbjct: 9   RRPIGSTMLALAILLAGWLA-----WRQLPVAPLPQIDTPMVV---------VSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        S      ++ L F   R     + +V   + G
Sbjct: 55  SPTSMAATVAGPLERALGAIAGLSSISSSSSTGTTEVRLFFDIDRDLNEASREVQAAING 114

Query: 122 VNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           V  +L      +            I+    +   +     +         + +I   +  
Sbjct: 115 VIDQLPPGMPGRPTFRKLNSSTSPILALALSSATLPPS--QLYDLADNIVLQKISRVQGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +       L  +    +PS L  L  +        V  +             R      
Sbjct: 173 GEVSLGGASLPAVRIRFEPSALAALGMSLEDARQVVVAASAEAPEGFLEDEGNRWLVATG 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           + +++  + S                    D+       +         +   +      
Sbjct: 233 HKLKNAADFS--------------------DLVLRWKNGQAVRLSDVAEVSDSVENRYSS 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                     A+ + +   +   TI+        L+A   P     V         GS +
Sbjct: 273 GFHNHQPAIIALVTRQPDANVVATIDAIKATLPQLQAILPPQASLTVVMDRSLGIRGSLA 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T      +V  V+++ V   +  L+    I +++I T A++ L G +L   SI  +
Sbjct: 333 EAQWTLVFSCLIVAAVVWLFVARLRTALIPVAVIPVSLIGTFAVIWLAGFSLNNLSIMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           V+  GL VD  I+V E I     +  S + +   G      T+   N+  ++  V + F 
Sbjct: 393 VVAAGLVVDDAIVVLENITRHTERGLSPYRAAMRGAGEVSFTLLALNVALVVVFVAVLFM 452

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R F++T+  +I+IS+  +IS+  A+    +  ++ +    +  ++   +P  
Sbjct: 453 GGIIERLFREFSLTLAAAIVISLVVSISLTPALCAHGLPRERRQKAAEHGAAQAAALPGG 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
           +      A     G   L     +     H    G+       L     +
Sbjct: 513 MPDVTHDAGQGMPGSVSLQDDAEVARAPWHRRLLGLHASYFHHLQAAYEQ 562



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 88/249 (35%), Gaps = 7/249 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V LS V    +S++    S  +        +  +    + VA    ++    ++  I+
Sbjct: 252 QAVRLSDVAEVSDSVENRYSSGFHNHQPAIIALVTRQPDANVVATIDAIKATLPQLQAIL 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDIT 705
           P        +      R  + +    ++ S + +   +W    +   AL  +  + + + 
Sbjct: 312 PPQASLTVVMDRSLGIRGSLAEAQWTLVFSCLIVAAVVWLFVARLRTALIPVAVIPVSLI 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     L G   N  ++ A++   G  V+D +VV + +    +     +S      +  
Sbjct: 372 GTFAVIWLAGFSLNNLSIMALVVAAGLVVDDAIVVLENI---TRHTERGLSPYRAAMRGA 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            E     +  ++A  +  + +   GG +      F++ +A  IV++   SI +   +   
Sbjct: 429 GEVSFTLLALNVALVVVFVAVLFMGGIIERLFREFSLTLAAAIVISLVVSISLTPALCAH 488

Query: 823 IYDWRAKNA 831
                 +  
Sbjct: 489 GLPRERRQK 497



 Score = 39.7 bits (90), Expect = 1.9,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 88/244 (36%), Gaps = 6/244 (2%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            Q+     + V L+ V      +        +          +     D+ A   V +++ 
Sbjct: 815  QIITSEGKSVALAEVARWHFGMVQDRERHVDQFSASTISFSVAADVTDTAALEAVRKVID 874

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +   +  ++ I   +   PK   +   +G + + +     L+   +       +  ++T
Sbjct: 875  AERMPVTVIADIDGDDGR-PKSLVKADGQGWLILGVVLAVYLVLGILYENLLHPITVLST 933

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +       L         F+L A+  +  LIG  + + +++ D      K     ++ + 
Sbjct: 934  IPSAGVGALLALWASNTPFSLIALLGLFLLIGVVMKNGILMIDVAL--KKQLHEGLAPQV 991

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             I ++  + L   + T++AA    +P+A+    GG +     + +  G+ V+   +++  
Sbjct: 992  AILQAAGQRLRPILMTNVAALAGAIPLAMGLGDGGELRRPMGLVIIGGLAVSQLITLYTT 1051

Query: 817  APIL 820
              + 
Sbjct: 1052 PALY 1055


>gi|302389928|ref|YP_003825749.1| protein-export membrane protein SecD [Thermosediminibacter oceani
           DSM 16646]
 gi|302200556|gb|ADL08126.1| protein-export membrane protein SecD [Thermosediminibacter oceani
           DSM 16646]
          Length = 413

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 31/177 (17%), Positives = 80/177 (45%), Gaps = 4/177 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VGP +  + + K +   I+    ++ ++ + ++    L A   L+  I  TL  F +  
Sbjct: 236 SVGPTLGADSLAKSLRAGIVGVFLVMAFMILYYRIP-GLIADIALMFYIMLTLIVFIMLD 294

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A  +  +G +V+  V++++R ++ ++   +  + R  +D      L   + +
Sbjct: 295 ATLTLPGIAGFILSVGMAVDANVLIFERFKEELR---SGKTLRAAMDSGFYRALTTIIDS 351

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++   I+ L +  +G   I  FA+ +  G + +  ++I +   +L+ + + R    +
Sbjct: 352 NLTTIIAALVLFYFGTGPIKGFAVTLIIGNIASLFTAIVVTRILLVNLINTRLITNK 408



 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 133/367 (36%), Positives = 225/367 (61%), Gaps = 27/367 (7%)

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
            + +    +  + E+I +R+DQ+G++E  + R G +RI ++LPG +D  +  +++G TA 
Sbjct: 64  GETITDEKMNAAKEVIARRVDQLGVAEPVVVRQGENRIRVELPGVKDSQKALEVIGKTAS 123

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F                               KV ++G +++ A A +    ++P+V 
Sbjct: 124 LQFIGPDQ--------------------------KVILTGDNVSDAKAVY-DNLNRPLVS 156

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
           +  D  GA++F E T+  + KP+A+VLDG +++APV+   I +G+A I G  +I+ A  L
Sbjct: 157 LKLDSEGAKKFEEATKKFLNKPIAIVLDGEIISAPVVMAVITNGEAVIEGISSIDEAAQL 216

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           AA++R G+LPI L   E R+VG  LG+DS+ K   A + G+ L++ FMI+ Y   GL+AD
Sbjct: 217 AALIRGGALPIDLEQREIRSVGPTLGADSLAKSLRAGIVGVFLVMAFMILYYRIPGLIAD 276

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            ++   ++LTL +  +L ATLTLP IAG +L +G+AVD+N+L+ ER +EE R  +++  +
Sbjct: 277 IALMFYIMLTLIVFIMLDATLTLPGIAGFILSVGMAVDANVLIFERFKEELRSGKTLRAA 336

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           +D GF RA +TI DSN+T +IA +VLF+FG G ++GFA+T+ +  + S+FTAI + R ++
Sbjct: 337 MDSGFYRALTTIIDSNLTTIIAALVLFYFGTGPIKGFAVTLIIGNIASLFTAIVVTRILL 396

Query: 512 IFIIRYK 518
           + +I  +
Sbjct: 397 VNLINTR 403



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 17/143 (11%), Positives = 45/143 (31%), Gaps = 4/143 (2%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
               +L   +  +              +  +  A  K  I LGLDL+GG +++LE     
Sbjct: 4   RARSLLKIAVILLIGFFLAYMLYFGIKIGPYQVAPAKKAIKLGLDLQGGIYVLLEAKPKP 63

Query: 63  -DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
            +   +  +    + +   + + G+    + +   N+I +     +  +   + +     
Sbjct: 64  GETITDEKMNAAKEVIARRVDQLGVAEPVVVRQGENRIRVELPGVKDSQKALEVIGKTAS 123

Query: 121 GVNSKLNVDPKKNLLVTTTEKEI 143
                 +          +  K +
Sbjct: 124 LQFIGPDQKVILTGDNVSDAKAV 146


>gi|260891456|ref|ZP_05902719.1| protein-export membrane protein SecD [Leptotrichia hofstadii F0254]
 gi|260858839|gb|EEX73339.1| protein-export membrane protein SecD [Leptotrichia hofstadii F0254]
          Length = 404

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 130/382 (34%), Positives = 213/382 (55%), Gaps = 22/382 (5%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +      ++ +  + +   II +R++ IG++E  IQ  G+ +++++L G +DP +  +L
Sbjct: 38  SVVLQAQGKIEADTMSKVRNIIERRVNSIGVAEPVIQLSGNDKLIVELAGIKDPQKAIEL 97

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +GTTAK+ F                   +D      L+E     S               
Sbjct: 98  IGTTAKLEFRIKN---------------KDGSYGPVLLEGSALKSAGVSRDQVGM----- 137

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
             P V    +  GA  F ++TR+NIGK LA++LD +  +AP IN  I  G   I+G F++
Sbjct: 138 --PSVSFELNSQGANTFAKITRENIGKQLAIMLDNKEQSAPTINSEINGGSGIITGRFSM 195

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA +L++G+LP+++ IVE R VGA LG DSI +   A +  L +I +FMI +Y  
Sbjct: 196 EEANNLANLLKSGALPVEIKIVENRTVGATLGVDSIRQTGIAGLIALGVISVFMIAIYKI 255

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G+VAD ++ +N +L L LLS +GA LTLP IAG +L +G+AVDSN++  ERI+EE R  
Sbjct: 256 PGIVADIALLINGVLVLGLLSGIGAALTLPGIAGFILTLGMAVDSNVITYERIKEELRLG 315

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +++ G+  A+  I D NIT L+   VLFF G G ++GFA+T+ L ++ ++ T + 
Sbjct: 316 ESLHDAVERGYENAFPAIIDGNITTLLVAAVLFFLGTGPIKGFAVTLSLGVVATVITGVF 375

Query: 506 IVRAMMIFIIRYKKMKSIDINP 527
           + + ++   I+   +K   +  
Sbjct: 376 VSKVILKLFIKTFNIKREQLFW 397



 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 39/251 (15%), Positives = 97/251 (38%), Gaps = 7/251 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +    ++ +     L   + S    + E N    +            +  ++K    
Sbjct: 151 TFAKITRENIGKQLAIMLDNKEQSAPTINSEINGGSGIITGRFSMEEANNLANLLKSGAL 210

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +           VG  +  + IR+  +  +I+   + +++   +K    + A   L+++
Sbjct: 211 PVEIKIVENR--TVGATLGVDSIRQTGIAGLIALGVISVFMIAIYKIP-GIVADIALLIN 267

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               LG  +  G    L  +A  +  +G +V+  V+ Y+R+++ ++L     S  D +++
Sbjct: 268 GVLVLGLLSGIGAALTLPGIAGFILTLGMAVDSNVITYERIKEELRL---GESLHDAVER 324

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LF 822
                    +  ++   +    +   G   I  FA+ ++ G+V    + +F++  IL LF
Sbjct: 325 GYENAFPAIIDGNITTLLVAAVLFFLGTGPIKGFAVTLSLGVVATVITGVFVSKVILKLF 384

Query: 823 IYDWRAKNARI 833
           I  +  K  ++
Sbjct: 385 IKTFNIKREQL 395



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITL 100
           N++ LGLDLRGG+ +VL+          +    + +   +   G+    ++    +K+ +
Sbjct: 25  NKVKLGLDLRGGTSVVLQAQGK-IEADTMSKVRNIIERRVNSIGVAEPVIQLSGNDKLIV 83

Query: 101 SFADSRFKENIADKVTLFLQGVNS 124
             A  +  +   + +    +    
Sbjct: 84  ELAGIKDPQKAIELIGTTAKLEFR 107


>gi|313143855|ref|ZP_07806048.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128886|gb|EFR46503.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 155

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 47/124 (37%), Positives = 79/124 (63%), Gaps = 1/124 (0%)

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           + D+    G   L G++FNL  +AA+LTLIGYS+ND ++++DR+R+ M L       R +
Sbjct: 1   MHDVIIVSGVVILVGVDFNLDVLAALLTLIGYSINDTIIIFDRIREQM-LIKRQKDMRYV 59

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           I+++++ TL R++ TS+  F  VL + ++GG +I  F++PM  G++VA  SSIF A  + 
Sbjct: 60  INEAVSCTLSRTLLTSLTVFFVVLTLYLFGGEIIVGFSLPMLVGVIVATCSSIFFAPRLA 119

Query: 821 LFIY 824
           +   
Sbjct: 120 IMFG 123


>gi|115524747|ref|YP_781658.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
 gi|115518694|gb|ABJ06678.1| acriflavin resistance protein [Rhodopseudomonas palustris BisA53]
          Length = 1040

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 59/531 (11%), Positives = 135/531 (25%), Gaps = 39/531 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKE 84
                +   P                   +   L     D +   +    +     +   
Sbjct: 29  YRALPVSALPQVDFPT-----------VQVTTQLPGASPDVIASLITAPLERQLGQIPSL 77

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
                +     ++++L F  +R  +     V   +      L  +              +
Sbjct: 78  TTMTSTSSFGVSQVSLQFDLNRDIDGATQDVQAAINAAAGVLPKNLPYPPTYAKVNPADA 137

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            V++   +    S     S         ++       +      +   +  + D SRL  
Sbjct: 138 PVMT-LALTSDTSAIRAMSDIADTLLAQRLAQISGVGRVSVLGGLKPAVRIQADLSRLAA 196

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              +   +                                             TAN    
Sbjct: 197 YGISMEDLRTAIAN--------------------ANVSGPKGSLDGAQQAYTITANDQIA 236

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             +    I                 I   L     G               +   +    
Sbjct: 237 VAEAYRPIIVAYRNGSPVTIGDIARIVDGLENDRTGGWYNGTPAVILDIQRQPGANVIEV 296

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           +         L+          V          S +  + T  + A LV +V+ + +   
Sbjct: 297 VRQIREEIPKLQKAIPAGVQLTVVSDRTITIRASVNDVQFTLVLSAVLVTLVVLLFLRSI 356

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  ++A  ++ L++I +  ++   G +L   S+  + +G G  VD  I++ E I      
Sbjct: 357 RATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENIVRHMED 416

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMF 501
            +S   +   G      T+    ++ +   + L F     G   R FA+T+ ++++ S  
Sbjct: 417 GESPMQAALSGAREIGFTVISLTLSLIAVFIPLLFMSGLVGRMFREFAMTLTIAVVTSAI 476

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
            ++++   M   ++  K  +     P             +F       V  
Sbjct: 477 VSLTLTPMMCSRLL--KHAREERQIPGMATISGWIDRVAEFYHRSLLWVLQ 525



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSIRATIIAGVALPLSLITSFGVMYFAGFSLDNLSLMALTIGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      S          E     +  +++     +P+    G V      FA+ +   
Sbjct: 411 VRHMEDGESPMQAALSGAREIGFTVISLTLSLIAVFIPLLFMSGLVGRMFREFAMTLTIA 470

Query: 805 IVVAASSSIFIAA 817
           +V +A  S+ +  
Sbjct: 471 VVTSAIVSLTLTP 483



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 65/178 (36%), Gaps = 6/178 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             ++ V +   +I    +I            + +      ++ + + + I + + ++ Y 
Sbjct: 821 DAVKAVSEIEQQIGMPGSIVGLYSGDAAEFAKSLAGQPWLILAALVTIYIVLGVLYESYI 880

Query: 693 ALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               I + +    +   L    LFG + ++  +  ++ L+G    + +++ D   +    
Sbjct: 881 HPITILSTLPSAGVGAILALM-LFGQDLSVIGLIGIILLMGIVKKNAIMMIDFALE--AE 937

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
               +S  D I ++        + T++AA    LP+A+           P+   IV  
Sbjct: 938 RGQGLSSYDAIVQACLLRFRPIMMTTLAALFGALPLAI-ESGTGAELRFPLGISIVGG 994


>gi|296114226|ref|ZP_06832881.1| acriflavin resistance protein [Gluconacetobacter hansenii ATCC
           23769]
 gi|295979302|gb|EFG86025.1| acriflavin resistance protein [Gluconacetobacter hansenii ATCC
           23769]
          Length = 1099

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 69/665 (10%), Positives = 162/665 (24%), Gaps = 46/665 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++   +   G+            +   P+                  + +E  +
Sbjct: 10  RPVATTLVSLALLLAGVFA-----YRILPVGDLPNISVPI-------------IYVEATQ 51

Query: 63  DDFVNGFLQMYS-DELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +       L      +           Q    I L+F DS   ++ A+ V   
Sbjct: 52  PGASPQQMASSVTTPLERRLGQIAGISTIESDSSQDSAFILLTFNDSVNIDSAANDVEAA 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           LQ     +    +            + ++    +                +    +   +
Sbjct: 112 LQAARGDMPATLRTPPEYWKANPSDNPIII-LALTSDTQPVSHLYDIAKTRLQPLLSQIQ 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                         +  + +P  L +       +       N +          +R +  
Sbjct: 171 GVGWIDIVGSSAPAVRVDINPFPLFKYGLGFEDIRSALASANANTPKGFIQEGPIRYTLA 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                 D  +                      ++       R         +   +    
Sbjct: 231 TNDQARDAAQ--------------------YRNLVIGYRNGRPVRLSDVAKVHDGVENDH 270

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                       AI   KA  +    I+        LRA                    S
Sbjct: 271 KAGFFNGHPAVMAIVRPKAGANVIHVIDQIKERVPTLRAALPQGITLTPAMDRSVTIRAS 330

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +  + T  I   LV++V+   +   +  L+   ++ +++  TLA++ L G +L + S+ 
Sbjct: 331 LADTQWTLVISVALVVLVVLFFLRTPRSTLIPAITVPISLAGTLAVMYLFGFSLDILSLM 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            + +  G  VD  I+V E I            +  +G      T+    I+ +   + L 
Sbjct: 391 ALTIATGFVVDDAIVVLENIARHMEAGMGRMEATLLGSREISFTVLSITISLVAVFLPLL 450

Query: 479 FFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
             GG A +    F++T+ +++++S+F ++S+   M   ++       +          + 
Sbjct: 451 LMGGTAGKIFFEFSMTLAITVIVSLFLSLSLTPMMCSLMLEVNHDAPLPATAPLWQRAMR 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
            C                          + T              L ++    +    V 
Sbjct: 511 ACSDGFETLFAMVLRIYGRSLEWALRHHVITALTLPASFLLMIGVLVIMPKGILPKEDVA 570

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             +   +    +       K   +                        +       +   
Sbjct: 571 LVMSFFRADQTTSFPVMTSKIRQISQAMMADKDTQDVLAFSGDSTIEGQAFAQMIDRTQR 630

Query: 656 IVGPK 660
             GP 
Sbjct: 631 RDGPD 635



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 6/130 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    T+ + +  TL    LFG   ++ ++ A+    G+ V+D +VV + +    + 
Sbjct: 357 RSTLIPAITVPISLAGTLAVMYLFGFSLDILSLMALTIATGFVVDDAIVVLENI---ARH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +   +       E     +  +++     LP+ + GG+   +   F++ +A  ++V
Sbjct: 414 MEAGMGRMEATLLGSREISFTVLSITISLVAVFLPLLLMGGTAGKIFFEFSMTLAITVIV 473

Query: 808 AASSSIFIAA 817
           +   S+ +  
Sbjct: 474 SLFLSLSLTP 483



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/224 (15%), Positives = 89/224 (39%), Gaps = 6/224 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +      + +      A +   + ++  + ++   S+IQ          ++ I   I+  
Sbjct: 865  DGFVSAAISFNLAPGKALSDATDEIRTTMVKLRVPSSIQGGFSGQAAEFQKAIVNEILVF 924

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I + + M + + I ++ +   L  ++TL       +    L G EF+L A+  ++ L+G 
Sbjct: 925  IAALMTMYVTLGILYESYIHPLTILSTLPSAAVGAVLALWLTGQEFSLIAMIGMILLVGI 984

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D            +     I ++  +     V T++AA    +P+ +    
Sbjct: 985  VKKNAILMVD--FALHAERDGGMQPEAAIREACVKRFRPIVMTTLAAAFGAVPLIISDGY 1042

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G  +     I +  G+ ++   +++    I +++   RA + R+
Sbjct: 1043 GIELRRPLGIAVVGGLAMSQLLTLYTTPVIYIYLDRLRAWSKRM 1086


>gi|219684397|ref|ZP_03539341.1| protein-export membrane protein SecD [Borrelia garinii PBr]
 gi|219672386|gb|EED29439.1| protein-export membrane protein SecD [Borrelia garinii PBr]
          Length = 586

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 91/211 (43%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +  +   +  K         I +  I+GP +  + +  GI    ++   
Sbjct: 365 NVSIQGDSFDKKEALDLALVFKTAAFPVDIKIDDLRIIGPTLGAKTVDLGIKASALALSL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++ + +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFMCVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRK---FENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISARKSK 572



 Score =  117 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 128/497 (25%), Positives = 219/497 (44%), Gaps = 53/497 (10%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              I LGLDL GG  + + +D         +                            L
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRS---------------------------L 165

Query: 101 SFADSRF-KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +FA+       I   +   +           ++                           
Sbjct: 166 TFAEKEDAIYRIMQILKDRVDRFGLTEPKIAREAGGNKIF-------------------- 205

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           ++   E    R+  +   +  +        L  L  ++          +  + + +    
Sbjct: 206 LDIPGEKDESRVSTLLSGKGNLTFYVVDDELTSLLHKKILEAGSLFSISEIQKNMNLSDS 265

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVE---ISGIHLNGATANFDPKTHKPVVDISFDE 276
                 ++     + D    +Y V D        G H+  A  + DP+T + +V  + D 
Sbjct: 266 KQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDGAHIKDAGVSNDPRTGRDIVAFNLDV 325

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGILAAML 335
            G+ +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + A  LA + 
Sbjct: 326 DGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEALDLALVF 385

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           +  + P+ + I + R +G  LG+ ++  G  A    L L+ LFM V YG  G+VA FS+ 
Sbjct: 386 KTAAFPVDIKIDDLRIIGPTLGAKTVDLGIKASALALSLVFLFMCVYYGLSGVVAGFSLV 445

Query: 396 L-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +    + + 
Sbjct: 446 IYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREGRKFENAFED 505

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++   R ++ FI
Sbjct: 506 GFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRFILEFI 565

Query: 515 IRYKKMKSIDINPLSRF 531
           I  +K K I I+  S++
Sbjct: 566 ISARKSKFISISWSSKY 582


>gi|221134445|ref|ZP_03560750.1| cation efflux system protein [Glaciecola sp. HTCC2999]
          Length = 1054

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 167/607 (27%), Gaps = 40/607 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + V+L ++I   G L +L     ++ +D  P       I                   
Sbjct: 12  NRFFVLLVTLIIAFGGLYSL----KKTPVDALPDLSDVQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F D         +V  +L  V 
Sbjct: 59  QVVQDQVTFPLTTAMLSVPGAQTVRGYSFFGDSYVYIIFDDDTDLYWARSRVLEYLSQVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S L    K  L    T      +              +           ++       + 
Sbjct: 119 SSLPDSAKPQLGPDATGVGWVYIY-ALTDKSGNHDLSQLRSIQDWFLKYELQTVPGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q   + DP +LR      + +       N      +  +            +
Sbjct: 178 SAVGGMVKQYQVQVDPDKLRAYNVPLSHIQMALKRGNKETGASVVEMAEAEYMVTATGYI 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +   +I                    + +  +E G              P        + 
Sbjct: 238 QSVGDIE------------------KIPLGINEQGTPLRIGDVATVNLGPQMRRGIAELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   +   +   +   TI         L++        +         + +     
Sbjct: 280 GEGEVVGGVVVMRFGENAQQTINGLKEKLESLKSSLPEGVEIVPVYDRSKLIVRAVDNLW 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   +V IV    + + +  +VA  ++ L ++++  ++ + G    + S+ GI + 
Sbjct: 340 SKLLEELAVVAIVCVAFLFHLRSSIVAVVTLPLGILVSFIIMYMQGINANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG   D  I++ E + +   K    +++ +  +    S     +F S +   ++ + +F 
Sbjct: 400 IGAMTDGAIVMIENMHKHMEKTPLTDENRWQIVAKAASEVGPALFFSLLIITVSFLPVFI 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  S   AI++V  +M + IR K +             I  
Sbjct: 460 LEAQEGRMFSPLAYTKTYAMAASAGLAITLVPVLMGYFIRGKVVSEKKNPINRLLIAIYL 519

Query: 537 CIAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
            +  Q M+  +   V   ++  I    +            +G +         + +   R
Sbjct: 520 PVLKQVMKFPKSTIVAAVLVTIIGFWPVDKIGSEFIPPLDEGDLMYMPTTYPGISIGKAR 579

Query: 596 SNLESLQ 602
             L+   
Sbjct: 580 ELLQQTD 586



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 83/272 (30%), Gaps = 16/272 (5%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   +    + +     + + L  V           I  +N        + +     
Sbjct: 767  QDYRDSPEQLSRLPVVTPNGQRIALGDVADIRVENGPPGIKSENARLNGWTFIDIDGVDV 826

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             +  ++  + +            T         +   +L    ++ + ++ I +L+Y+  
Sbjct: 827  GTYVESAKIHLANNLKLPAGYSITWAGQYEYMERAKEKLTY--VLPLTLAIIVILLYLNF 884

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR- 745
            R     A+  I TL + +   L    L G  F++      + L G +V   V++   +  
Sbjct: 885  RAFSEVAII-IVTLPMAMIGGLWLMYLEGFNFSVAVGVGFIALAGVAVEIGVIMLVYLNQ 943

Query: 746  ---------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
                     +      +   ++D +       +   + T     I ++P+      G  V
Sbjct: 944  ALAELKEKAEERAEPISDDLYQDALLHGAGLRVRPVMMTVATIIIGLMPILYGTGTGSEV 1003

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   A PM  G+  A   ++ +   I   +  
Sbjct: 1004 MSRIAAPMVGGMTSAVLLTLIVLPAIYSIVKK 1035



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 71/158 (44%), Gaps = 3/158 (1%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           ++ +A++  +   F    ++ A+ TL L I  +     + GI  N+ ++  +   IG   
Sbjct: 346 LAVVAIVC-VAFLFHLRSSIVAVVTLPLGILVSFIIMYMQGINANIMSLGGIAIAIGAMT 404

Query: 735 NDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +  +V+ + M K+M+    +   R  ++ K+ +E      ++ +   +S LP+ +     
Sbjct: 405 DGAIVMIENMHKHMEKTPLTDENRWQIVAKAASEVGPALFFSLLIITVSFLPVFILEAQE 464

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              F+ P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 465 GRMFS-PLAYTKTYAMAASAGLAITLVPVLMGYFIRGK 501


>gi|113969967|ref|YP_733760.1| acriflavin resistance protein [Shewanella sp. MR-4]
 gi|113884651|gb|ABI38703.1| acriflavin resistance protein [Shewanella sp. MR-4]
          Length = 1018

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 77/682 (11%), Positives = 200/682 (29%), Gaps = 48/682 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  I   GL  +         L+ FP       +           +  +  
Sbjct: 9   KRPVTTSMFFFAILLFGLASS-----RLLPLEMFPGIDIPQIV---------VQVPYKGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + +           Q   +I ++          + +    +  
Sbjct: 55  TPAEVERDITKVLEESLATMGGIDELESESSQEGAEIEINMKWGENVATKSLEAREKIDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++  +   +  ++ ++  + + D+ +S A +      +Q    +   E   
Sbjct: 115 VRHLLPKDVERVFIRQFSTADMPVLTIRISSDRELSGAFDLLD---KQLKRPLERVEGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         Q+    + +RL     +  ++       N            L      + 
Sbjct: 172 KVNLYGVEQKQIEVRINANRLAASGYSATELQTRLGRENFVLSAGTLRESNLVYQVSPKG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  +I  + L                                  N+   L   ++GR
Sbjct: 232 EFRNLEDIKALVLL------------------------PGLTLGDVANVQFALPERVEGR 267

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE-RNVGADLGSDS 360
            L            ++  +     +    +  + +       + +            S S
Sbjct: 268 HLDKHYAVGLDVFKESGANLVEVSDRVLKVIELAKQDQQFQGIRLFIMEDQASGVKSSLS 327

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +  I A L  IVL++ +   K  L+   S+ +++ +TLA + LLG +L + S+ G+
Sbjct: 328 DLLLSGLIGALLSFIVLYLFLRNFKMTLIVVSSVPISIGMTLAAMYLLGYSLNILSMMGL 387

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-----SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           +L +G+ +D+ ++V E + +E +            ++  G  +    +    +T  I  +
Sbjct: 388 LLAVGMLIDNAVVVTESVLQEKQGKDTKSAEDNENAVMTGVDKVSLAVLAGTMTTAIVFL 447

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
              F     +  F   + ++I IS+  ++ + + ++  ++              +     
Sbjct: 448 PNIFGVKVELTIFLEHVAIAICISLAASLLVAKTLIPLMLTKFHFDIAPEKAPGKLQNFY 507

Query: 536 DCI-AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
           +       +R    G+    +    ++ L            K  I +        +L+V 
Sbjct: 508 NRSLNWVLLRPWRSGLISVAILVSTALPLSMVKQDQEDSQSKERIYINYQVEGRHNLNVT 567

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + +  ++    + +      +           SV   +    +     +    S     
Sbjct: 568 EAMVSQMEEYLYNNKEEFHIDSVYSYYAPDDASSVILLKKDLPMPLDELKKKIRSGFPKF 627

Query: 655 EIVGPKISRELIRKGIVGVIIS 676
            I  P+        G+   +  
Sbjct: 628 SIAKPQFGWGNDNSGVRVTLTG 649



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 93/254 (36%), Gaps = 14/254 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  ++ +      +++E L   D            +     +     AQT++ ++++   
Sbjct: 752 VRIDQRLYTLDNLASIEILPRFDTIKHYNRQTSLSIGANLDKLTTEEAQTKIKQVMENVR 811

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                  +++       +    +       ++++   + I +   F+        IT+++
Sbjct: 812 FPNGYNYSLRGGFERQDEDESVMAIN----MLLAIAMIYIVMAALFESLLLPTAIITSIL 867

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
             IT       L G   ++ A+  +L L+G  VN+ +V+ D++ +            D I
Sbjct: 868 FSITGVFWALLLTGTPMSVMAMIGILILMGIVVNNGIVLVDQINQVTPELDK---LSDTI 924

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIGSFAIPMAFGIVVAASSSIFI 815
            +     L   + T     + ++P+A+       GG      AI +  G+  +  +S+++
Sbjct: 925 REVCITRLRPVLMTVGTTVLGLVPLAMGETQIGGGGPPYSPMAIAIIGGLSFSTVTSLYL 984

Query: 816 AAPILLFIYDWRAK 829
                  +Y  R +
Sbjct: 985 VPLCYQLLYRMRYR 998



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 92/240 (38%), Gaps = 5/240 (2%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ V+  L     G    +++    +          +   +   +  + K+  +   + 
Sbjct: 252 DVANVQFALPERVEGRHLDKHYAVGLDVFKESGANLVEVSDRVLKVIELAKQDQQFQGIR 311

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                +      S          +      +++Y+++R  +   L  ++++ + I  TL 
Sbjct: 312 LFIMEDQASGVKSSLSDLLLSGLIGALLSFIVLYLFLR-NFKMTLIVVSSVPISIGMTLA 370

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINE 767
              L G   N+ ++  +L  +G  +++ VVV + + +  +   T       + +   +++
Sbjct: 371 AMYLLGYSLNILSMMGLLLAVGMLIDNAVVVTESVLQEKQGKDTKSAEDNENAVMTGVDK 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV-IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                +  +M   I  LP  ++G  V +  F   +A  I ++ ++S+ +A  ++  +   
Sbjct: 431 VSLAVLAGTMTTAIVFLP-NIFGVKVELTIFLEHVAIAICISLAASLLVAKTLIPLMLTK 489


>gi|150390112|ref|YP_001320161.1| protein-export membrane protein SecD [Alkaliphilus metalliredigens
           QYMF]
 gi|149949974|gb|ABR48502.1| protein-export membrane protein SecD [Alkaliphilus metalliredigens
           QYMF]
          Length = 420

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 91/245 (37%), Gaps = 4/245 (1%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            +  S V   +  + + D    +               G+   ++        +   +  
Sbjct: 175 QIPNSQVDDKIIYIVLDDEIISSPVVNDRIPDGQATISGNFTPESASNLATLIRAGALPV 234

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
             T   T  +   +    +   +    I    +L+++   ++    L A   L++ I   
Sbjct: 235 DLTEVQTTTITASLGENSLASSVRAAQIGITIVLLFMLAFYRLS-GLVADIALVVYILIV 293

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           LG F        L  +AA++  +G +V+  V++++R+++ ++      + R  ID   N 
Sbjct: 294 LGIFVALNATLTLPGIAALILSVGMAVDANVIIFERLKEELRA---GKTLRSAIDSGFNR 350

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                + +++   I+ + +  +G   I  FA+ +  GIV +  +++ +   +L  +    
Sbjct: 351 AFKAIIDSNITTLIAGVVLYQFGTGPIRGFAVMLIIGIVASMFTAVVVTKFLLKLLVAMN 410

Query: 828 AKNAR 832
               +
Sbjct: 411 ITKNK 415



 Score =  118 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 129/382 (33%), Positives = 213/382 (55%), Gaps = 34/382 (8%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
                +   + Q +E+ R+R+D +G++E  I R G  RI + LPG ++     +++G TA
Sbjct: 61  ETGNELDRMMSQVIEVFRRRVDSMGLTEPEIVREGDKRIRVALPGVENAQEAIEMVGKTA 120

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           ++ F                             E  V ++G ++ G+   F      P+V
Sbjct: 121 QLQF--------------------------VDPEGNVILTGNNIRGSEVKFPSGQANPIV 154

Query: 271 DISFDEMGARRFFEVTRD--------NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
            +  D  GAR F EVT             K + +VLD  ++++PV+N  IP G+A ISGN
Sbjct: 155 SLDLDSEGARIFAEVTGRLAQIPNSQVDDKIIYIVLDDEIISSPVVNDRIPDGQATISGN 214

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           FT E+A  LA ++RAG+LP+ L  V+   + A LG +S+     A   G+ +++LFM+  
Sbjct: 215 FTPESASNLATLIRAGALPVDLTEVQTTTITASLGENSLASSVRAAQIGITIVLLFMLAF 274

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   GLVAD ++ + +++ L +   L ATLTLP IA ++L +G+AVD+N+++ ER++EE 
Sbjct: 275 YRLSGLVADIALVVYILIVLGIFVALNATLTLPGIAALILSVGMAVDANVIIFERLKEEL 334

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R  +++  ++D GF+RA+  I DSNIT LIA VVL+ FG G +RGFA+ + + I+ SMFT
Sbjct: 335 RAGKTLRSAIDSGFNRAFKAIIDSNITTLIAGVVLYQFGTGPIRGFAVMLIIGIVASMFT 394

Query: 503 AISIVRAMMIFIIRYKKMKSID 524
           A+ + + ++  ++     K+  
Sbjct: 395 AVVVTKFLLKLLVAMNITKNKK 416



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 16/129 (12%), Positives = 42/129 (32%), Gaps = 4/129 (3%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           +   +  ++  + + +A         +           +  GLDL+GG ++V E   D+ 
Sbjct: 3   FKSTIIFIMIVVMVGLASFTAFNGLEVGNVAIRPIGESVRQGLDLQGGVYVVYEAQTDET 62

Query: 66  VNGF---LQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
            N     +    +  R  +   G+    + +  + +I ++       +   + V    Q 
Sbjct: 63  GNELDRMMSQVIEVFRRRVDSMGLTEPEIVREGDKRIRVALPGVENAQEAIEMVGKTAQL 122

Query: 122 VNSKLNVDP 130
                  + 
Sbjct: 123 QFVDPEGNV 131


>gi|299139720|ref|ZP_07032893.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
 gi|298598344|gb|EFI54509.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
          Length = 1056

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 60/544 (11%), Positives = 160/544 (29%), Gaps = 33/544 (6%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
            ++  + +LIA P  + ++  D FP+                          + + G L 
Sbjct: 14  FIVLALLILIAAPVVILRTPTDIFPNINIPVI---------SIAWQYTGLNPEEMEGRLT 64

Query: 72  MYSDELRSF-LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
              +++ +  +        +    Q  I +        +    +V+   +     L    
Sbjct: 65  SPYEKVLTTLVDNIEHIESTTINGQAIIKVYLQPGASLDTANAQVSAASEFQLRSLPPGI 124

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
               ++  +   + I+    +   +     + +   +     Q+      +         
Sbjct: 125 LPPQIINFSASSVPILQLGLSGKDLSEQ--QLNDFGLNFIRPQLVTVPGAVVPSVYGGKQ 182

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
             +    DP RL+    +   +       N  + G    +                  + 
Sbjct: 183 RSIMVNLDPRRLQAEGVSPVDVLNAMNQQNVVQPGGTAKIGSAEYDVRLNGSPLTVEGLE 242

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                               ++   ++     +     ++        +           
Sbjct: 243 --------------------NLPLKQVNGTTVYVHDVASVVDGSIPQTNIVRQDGHRGVL 282

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                    S    ++    L   +++G                   S +       I A
Sbjct: 283 VSILKSGSASTLDVVKGEFALLPRIKSGLPSTLKITPIGDQSIFVRSSVNGVIREAVIAA 342

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            L  +++ + +   +  ++   SI L+++ ++ +L L+G T+ + ++ G+ L +G+ VD 
Sbjct: 343 TLTGLMILLFLGSWRSTIIIAVSIPLSILTSIIVLGLVGQTINIMTLGGLALAVGILVDD 402

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
             +  E I     +   +  ++  G ++       S +   I  + +FF  G   R   +
Sbjct: 403 ATVTIENIERYLEEGHPLNEAILEGAAQISVPALVSTLCICIVFLPMFFLAGV-ARYLFV 461

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
            +  +++ +M  +  + R ++  +  Y         PLSR  L     A + +  R    
Sbjct: 462 PLAEAVVFAMLASYMLSRTLVPTLAMYLLKAHDHHAPLSRNPLARFQRAFERVFERVRST 521

Query: 551 GISI 554
             S+
Sbjct: 522 YESL 525



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 59/152 (38%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            VI + +  L+ +     W   +    ++ L I  ++    L G   N+  +  +   +G
Sbjct: 338 AVIAATLTGLMILLFLGSWRSTIIIAVSIPLSILTSIIVLGLVGQTINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +    +         + I +   +    ++ +++   I  LPM    G
Sbjct: 398 ILVDDATVTIENI---ERYLEEGHPLNEAILEGAAQISVPALVSTLCICIVFLPMFFLAG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  +V A  +S  ++  ++  +
Sbjct: 455 VARYLF-VPLAEAVVFAMLASYMLSRTLVPTL 485


>gi|37520445|ref|NP_923822.1| AcrB/AcrD/AcrF family multidrug efflux protein [Gloeobacter
           violaceus PCC 7421]
 gi|35211439|dbj|BAC88817.1| gll0876 [Gloeobacter violaceus PCC 7421]
          Length = 1076

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 65/551 (11%), Positives = 160/551 (29%), Gaps = 42/551 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     ++   +     +++     + +   D  P                   ++   
Sbjct: 8   LRRPYTFIVASLL-----VVLLGVVTIRRMATDILPEIDVPV-----------VSVIWAY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             V  +D     + +      + +              + I + F      E    ++T 
Sbjct: 52  PGVSPEDMEKRIVTVAERAYTTTVNDIEHMESQSMNGVSVIKVFFQPGAKVEAAVAQLTS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q +   L       L++  +   + ++        +     E     +     Q+   
Sbjct: 112 ISQTILRILPPGITPPLIIRYSAASVPVLQVGIGSKTLSEQ--ELYDYNLNFVRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L       Q+  + DP  L     +   ++      N         +     + 
Sbjct: 170 QGASIPLPYGGKPRQVMIDLDPEALFARGLSATDVTAAINAQNLILPAGTAKIGEREYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 E   ++                     D+   E+     +      +    AV 
Sbjct: 230 QINSSPEVLAQL--------------------ADLPIREVNGSTVYIRDVAQVRDGYAVQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +         +          S    +E        ++A   P     +          
Sbjct: 270 TNVVRQDGRRSSLLTVIKNGGASTLDVVERIKAALPRIQATLPPELEVKLLFDQSLFVRA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L   ++ + +   +  L+   SI L+++ ++  LS LG TL + ++
Sbjct: 330 AVDGVVKEALIAALLTGTMILLFLGSWRSTLIITISIPLSILCSIVALSTLGQTLNVMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     + + +  ++  G  +  +  F S +   I  V +
Sbjct: 390 GGLALAVGILVDDATVEIENIHRNLGQGKPLREAILDGAQQIATPAFVSTLCICIVFVPV 449

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           FF  G   R   + +G++++ +M  +  + R ++  ++RY     +++            
Sbjct: 450 FFLSGA-ARSLFVPLGMAVVFAMLASYLLSRTLVPVLVRYLLKPEVELYIAPEQAQGDWI 508

Query: 538 IAIQFMRARFW 548
             I     R +
Sbjct: 509 WGIHRGFDRGF 519



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +   + +     W   L    ++ L I  ++   +  G   N+  +  +   +G
Sbjct: 338 ALIAALLTGTMILLFLGSWRSTLIITISIPLSILCSIVALSTLGQTLNVMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + + +N+         R+ I     +    +  +++   I  +P+    G
Sbjct: 398 ILVDDATVEIENIHRNL---GQGKPLREAILDGAQQIATPAFVSTLCICIVFVPVFFLSG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +    F +P+   +V A  +S  ++  ++  +  +  K 
Sbjct: 455 AARSLF-VPLGMAVVFAMLASYLLSRTLVPVLVRYLLKP 492



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 71/233 (30%), Gaps = 9/233 (3%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +        Q  +          Y    +     V   +   +          +   +  
Sbjct: 817  ASLERRNQMQVVNHYNVQPTFDIYANVQNRDLGGVASEIGAIVARAEKELPRGSRIAMRG 876

Query: 660  KISRELIRKGIVGVIISAIAMLIY--IWIRF-KWYFALGAITTLILDITKTLGFFALFGI 716
            ++         + + +    +L+Y  + + F  W   L  I  L   +        +   
Sbjct: 877  QVESMNTAFTSLALGLIFAVVLVYCLMVVNFQSWVDPLVIIAALPGALAGICWMLFVTQT 936

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              ++ A+   +  IG +  + +++      N +      +    +       L   + T+
Sbjct: 937  TVSVPALMGTIMAIGVATANSILLVT--FANDRRGEGDDATAAALAAGYTR-LRPVLMTA 993

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +A  + +LPMA+    GG         +  G++VA  +++F    +   +   
Sbjct: 994  LAMILGMLPMALGLGEGGEQNAPLGRAVIGGLLVATFTTLFFVPVVYSVLRRK 1046


>gi|91205462|ref|YP_537817.1| RND family efflux transporter [Rickettsia bellii RML369-C]
 gi|91069006|gb|ABE04728.1| RND family efflux transporter [Rickettsia bellii RML369-C]
          Length = 1041

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 64/513 (12%), Positives = 147/513 (28%), Gaps = 40/513 (7%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
              +  + I   G+            +   P                   + L   +   
Sbjct: 2   LATLFMATILLFGIF-----GYRLLPVSVLPDIDFPTIQ---------VSVSLPGADPTT 47

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +   + +  ++  S +               +ITL F  SR  +  A  V   +     +
Sbjct: 48  MASSVALPLEKQFSTISNIDSMSSVNSAGSTQITLQFDLSRDIDAAAQDVQAAISSAAKQ 107

Query: 126 LNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           L  D                I       D +  + ++   E I    +++ +     Q  
Sbjct: 108 LPNDLPTPPSYRKVNPADAPIFYISLTSDTLPLYTVDYYAETI--MAERLSMLPGVAQVQ 165

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                   +  + DP ++        ++S      N +        + +  S      + 
Sbjct: 166 VYGSQQYAVRVQVDPVKMAANNIGLDQVSSIISSSNVNLPTGALYGKDIYSSIQAPGQL- 224

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
                                 +    I     G+  F +     I       +      
Sbjct: 225 ------------------QNAKEYNDLILTYRNGSPLFLKNIGKAIDSVANNKIAAWYRD 266

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
            P I  A    +   +    ++    +  +LR          +      +   S +    
Sbjct: 267 KPGIILA-IQKQPDTNTIEIVDGIKEVLPLLRRQIPEGVNINIMFDRSISIRESVNDANF 325

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           T  +   LV++ +F+ +   +  ++   ++ L+++ T A + L G ++   S+  + L +
Sbjct: 326 TMILALILVVLAIFLFLHNFRSVIIPTIALPLSIVGTFAFMYLFGFSIDNMSLMALTLAM 385

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG--- 481
           G  VD  I+V E I       Q+   +   G      TI    ++     + + F     
Sbjct: 386 GFVVDDAIVVLENITRHIEAGQNKIQACINGTKEIGFTIVSMTLSLTAVFIPILFMSGIL 445

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G  +   A+ +  +IL+S   +I++   +    
Sbjct: 446 GKLLHELAVVITTAILLSGVISITVTPMLCNVF 478



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 94/257 (36%), Gaps = 8/257 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L      P+ L  +   ++S+    I+    D     L   +    +++     ++ V  
Sbjct: 235 LTYRNGSPLFLKNIGKAIDSVANNKIAAWYRDKPGIILAIQKQPDTNTIEIVDGIKEVLP 294

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITT 699
            +   +P     N         RE +      +I++ I +++ I      +   +     
Sbjct: 295 LLRRQIPEGVNINIMFDRSISIRESVNDANFTMILALILVVLAIFLFLHNFRSVIIPTIA 354

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L I  T  F  LFG   +  ++ A+   +G+ V+D +VV + +    +      +   
Sbjct: 355 LPLSIVGTFAFMYLFGFSIDNMSLMALTLAMGFVVDDAIVVLENI---TRHIEAGQNKIQ 411

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
                  E     V  +++     +P+       G ++   A+ +   I+++   SI + 
Sbjct: 412 ACINGTKEIGFTIVSMTLSLTAVFIPILFMSGILGKLLHELAVVITTAILLSGVISITV- 470

Query: 817 APILLFIYDWRAKNARI 833
            P+L  ++    K++ +
Sbjct: 471 TPMLCNVFLKDEKHSTV 487



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 73/165 (44%), Gaps = 8/165 (4%)

Query: 671  VGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +G+++    ++IYI    +   +   +  ++ L   +   L    +F  E ++     ++
Sbjct: 871  LGLLLGLAVIVIYIILGMLYESFVHPVTILSGLPTAVFGALLTLLIFNSELDMYGFVGLI 930

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             LIG    + +++ D   +  +      S +D+I ++        + T++AA +  +P+A
Sbjct: 931  MLIGIVKKNAIMIIDFALELERTSNK--SSKDVILEACTIRFRPIMMTTLAALMGAMPIA 988

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +     G+   S  + +  G++ +   +++I   I L++   + K
Sbjct: 989  LGIGSTGAERRSLGLAVVGGLLTSQLLTLYITPIIFLYLEAGKRK 1033


>gi|262274959|ref|ZP_06052770.1| putative multidrug resistance protein [Grimontia hollisae CIP
           101886]
 gi|262221522|gb|EEY72836.1| putative multidrug resistance protein [Grimontia hollisae CIP
           101886]
          Length = 1057

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 72/569 (12%), Positives = 152/569 (26%), Gaps = 39/569 (6%)

Query: 1   MRNNP---WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           MRN            +   + LL+A          +  P                   + 
Sbjct: 1   MRNLIDASLARTRTMITLLLVLLVAGFYTYQTIPKESDPDITIPVIY---------VSVS 51

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
            E    +     L    ++    ++          +    +TL F      +     V  
Sbjct: 52  HEGISPEDAERLLVRPVEQELRSIEGIKEMTAIASEGHASVTLEFNVGVDLDEAMADVRE 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V  +L  D  +  +   T   +  VLS      V   AI   + + R+  +++   
Sbjct: 112 AVDLVKPRLPDDSDEPTVNEVTFANMQPVLSIALYGDVSERAI---VNVARELQEKLEGF 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +  ++   +      +    +P  L         +       N           + R S 
Sbjct: 169 KQILEVDIAGDREDVVEIIVEPLLLESYGLDQQDIFNLISRNNRVVAAGYVDTGYGRFSV 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               + E   +I                    + +     G +         + +     
Sbjct: 229 KVPSVFETAKDI--------------------LTLPIKIDGNQVVTFGDVAKVRRAFKDP 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG--SLPIKLNIVEERNVGAD 355
                L            +A  +   T+E A  +    RA                    
Sbjct: 269 ESFARLDGKPAVVLDVKKRAGENIIETVELAKAVMEEARASSLWPAALQVKYTWDGSDDV 328

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
               +  +        LV+IV+  I+      L+   SI  + +  L +L+L G T+ + 
Sbjct: 329 RSMLTDLQNNILSAILLVVIVIIAILGART-ALLVGVSIPGSFLTGLVVLALSGLTVNIV 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            +  +++ +GL VD  I+V E      R+      +      R    I  S  T L A  
Sbjct: 388 VLFSLIMAVGLLVDGAIVVTEYADRRMREGVDRKMAYREAAHRMAWPIIASTATTLAAFA 447

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            L F+ G           L+++ ++  ++++    +  +                     
Sbjct: 448 PLLFWPGITGEFMGYM-PLTLIATLSASLAMALLFVPVLGSMMGRPLPLTAEQQARTYAL 506

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLL 564
           +       R        ++  +I     +
Sbjct: 507 EQGDFSQARGITRAYIKTLSVAIRHPIKI 535



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/255 (11%), Positives = 81/255 (31%), Gaps = 15/255 (5%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +  N+ V    V     + +  +   +        L   +    + +    + + V 
Sbjct: 244 PIKIDGNQVVTFGDVAKVRRAFKDPESFARLDGKPAVVLDVKKRAGENIIETVELAKAVM 303

Query: 640 KKITEIVPLST--IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           ++                  G    R ++      ++ + + ++I I        AL   
Sbjct: 304 EEARASSLWPAALQVKYTWDGSDDVRSMLTDLQNNILSAILLVVIVIIAILGARTALLVG 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLYTT 753
            ++       L   AL G+  N+  + +++  +G  V+  +VV +    RMR+       
Sbjct: 364 VSIPGSFLTGLVVLALSGLTVNIVVLFSLIMAVGLLVDGAIVVTEYADRRMRE------- 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG--SVIGSFAIPMAFGIVVAASS 811
            +  +    ++ +      + ++     +  P+  W G       +        + A+ +
Sbjct: 417 GVDRKMAYREAAHRMAWPIIASTATTLAAFAPLLFWPGITGEFMGYMPLTLIATLSASLA 476

Query: 812 SIFIAAPILLFIYDW 826
              +  P+L  +   
Sbjct: 477 MALLFVPVLGSMMGR 491



 Score = 38.5 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 46/564 (8%), Positives = 139/564 (24%), Gaps = 57/564 (10%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK---NRISLGLDLRGGSHLVL 58
            R+    +++ ++I   G+  A          + FP   P     ++    DL        
Sbjct: 530  RHPI-KILIAALIVAGGVFFAY--GKSGLGSEFFPDVDPPFFNIKVRSHGDLS------- 579

Query: 59   EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE-NIADKVTL 117
                             E+   +           +   +  +     +  +     KV  
Sbjct: 580  ------IFEK--DALMKEVEQRVMGMDEIESVYTKTGGQDEIGIIQMKPVDWQQRRKVKE 631

Query: 118  FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             ++ +  K        L     +       S +++   +S A    +    ++I  +   
Sbjct: 632  IIEELRDKTADLAGLELEFKKPDAGPP---SDHDLSIEVSAADNSLIAPAAKQIRALLEQ 688

Query: 178  ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
            +              +    D  R          +     +   +    +        ++
Sbjct: 689  DPAFTNYSDTLTKPGIDWAIDIDREDAARFGADALLVGNTVQFVTNGLKIGDYLPDDANE 748

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                LV                 +  +                    +T     KP    
Sbjct: 749  EVDILV----------------RYPEEKRDIGRFDELRVKTPYGLVPITNFARIKPEPKQ 792

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             +   +    + + +       + + ++         L      I     +         
Sbjct: 793  GNIDRVDGRRVIKVMADMAEGYNLSLSLPGLNEKIEALGLPPEVIITLRGQNEAQDESSA 852

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT-LPS 416
                          L+LI  F          +   ++  + +     L +       + S
Sbjct: 853  FLVTAFIAALAAMALILITQFNSFY---QAFLILSAVLFSTVGVFLGLLIFQRPFGVIMS 909

Query: 417  IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              G++   G+ V++NI++ +      R+      ++    ++    +  + +T ++  + 
Sbjct: 910  GVGVITLAGIVVNNNIVLIDTYNVLRRRGLEKVDAILRTGAQRLRPVLLTTVTTVLGLMP 969

Query: 477  LFF------------FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            +              FG  + + ++           F+ +  +      ++  ++ K   
Sbjct: 970  MVLEMNVDLVNRGVEFGAPSTQWWSQLATAVAGGLTFSTLLTLVLTPCLLMLAREPKGAS 1029

Query: 525  INPLSRFFLIPDCIAIQFMRARFW 548
                   + + +  +   M  R  
Sbjct: 1030 KKDKQGNWQVEERESDFPMPLRDV 1053


>gi|218529041|ref|YP_002419857.1| heavy metal efflux pump, CzcA family [Methylobacterium
           chloromethanicum CM4]
 gi|240141873|ref|YP_002966381.1| heavy metal efflux pump, CzcA family [Methylobacterium extorquens
           AM1]
 gi|254559859|ref|YP_003066954.1| copper/silver efflux system, membrane component [Methylobacterium
           extorquens DM4]
 gi|218521344|gb|ACK81929.1| heavy metal efflux pump, CzcA family [Methylobacterium
           chloromethanicum CM4]
 gi|240011815|gb|ACS43040.1| heavy metal efflux pump, CzcA family [Methylobacterium extorquens
           AM1]
 gi|254267137|emb|CAX22959.1| copper/silver efflux system, membrane component [Methylobacterium
           extorquens DM4]
          Length = 1054

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 74/591 (12%), Positives = 166/591 (28%), Gaps = 42/591 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++I    +   GL            LD  P       I          +      
Sbjct: 11  RNLVLVLIGTVFVVAAGLYSV-----RTLPLDAIPDLSDVQTI---------VYTEYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + +  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLTVPRSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLSA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L       L    T        +     Q ++        ++R        +    
Sbjct: 117 AGKRLPAGVTPTLGPDATGVGWVYQYAIVAKQQTLAELRSLQDWVVRF---GASRAAGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +  G    + Q     DP+RLR    + +K+       N    G    +         + 
Sbjct: 174 EVAGVGGFVKQYNVVVDPNRLRAQGISLSKLRDAIRSSNADVGGRTVELSEFEFMVRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +I                          E G              P        
Sbjct: 234 YLKSVADIE-------------------NIALQTEAGTPLRVRDVARVELGPDERRGITE 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    IE      A + A        +           +   
Sbjct: 275 MNGEGEVAGGIVLQRFGANALNVIEGVKQRLAEVAASLPKGTEILPVYDRSQLIEAAIDT 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T    + +V +V  + +L+ +  LVA   + + +++ L  + LLG    + S+ GI 
Sbjct: 335 LKHTLVEESVIVALVCIVFLLHLRSALVAILMLPVGILMALGAMHLLGIGANIMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREENR---KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + +G  +D+ I++ E   +        +     L    +    ++F S +   ++ + +F
Sbjct: 395 IAVGAMIDAAIVMIENAHKHLERAAPGKPRVEILVEAAAEVGPSLFFSLLVITVSFLPIF 454

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   ++++V A+M   +R + +             + 
Sbjct: 455 TLESQEGRLFGPLAFTKTFAMAAAALLSVTLVPALMALFVRGRIIPEHRNPLNRLLIWVY 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             I    +RA+   + +++     ++      G  +  D   G  + +   
Sbjct: 515 RPIIHGVLRAKVLTILLAVAALGLTLWPARQLGSEFMPDLNEGTLMYMPTT 565



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            VI++ + ++  + +R     AL AI  L + I   LG   L GI  N+ ++  +   +G
Sbjct: 343 SVIVALVCIVFLLHLR----SALVAILMLPVGILMALGAMHLLGIGANIMSLGGIAIAVG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             ++  +V+ +   K+++         +++ ++  E      ++ +   +S LP+     
Sbjct: 399 AMIDAAIVMIENAHKHLERAAPGKPRVEILVEAAAEVGPSLFFSLLVITVSFLPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   ++      R
Sbjct: 459 QEGRLFGPLAFTKTFAMAAAALLSVTLVPALMALFVRGR 497



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 77/259 (29%), Gaps = 14/259 (5%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V    P   +V    +  +++               V +            V E     
Sbjct: 775  EVQVPLPAGGTVPLGEVAKVELTRGPTSIRTENGQLAVYIFVDLAGRDLGGYVAEARDAV 834

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTL 700
              E+     +        +       +  + V ++ + + + +++ F+        + +L
Sbjct: 835  NKEVRLPQGMSVQWSGQFEYLERAEARLKIVVPVTLLIIFLLLYLNFRRLAETFIVMLSL 894

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-------DRMR---KNMKL 750
               +   +      G   ++      + L G +    V++        D +R   +    
Sbjct: 895  PFALVGGVWLLWWMGFNMSVAVAVGFIALAGVAAETGVIMLVYLDHAWDEVRATCEREGR 954

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
              T    R  I     E +   + T +A    +LP+      G  V+   A+PM  G+V 
Sbjct: 955  PLTRADLRQAIMVGAVERVRPKMMTVVAIMAGLLPILWSTGAGSEVMQRIAVPMIGGMVS 1014

Query: 808  AASSSIFIAAPILLFIYDW 826
            +   ++ +   I   +   
Sbjct: 1015 STVLTLVVIPAIYGLVKGR 1033


>gi|159039559|ref|YP_001538812.1| acriflavin resistance protein [Salinispora arenicola CNS-205]
 gi|157918394|gb|ABV99821.1| acriflavin resistance protein [Salinispora arenicola CNS-205]
          Length = 1097

 Score =  130 bits (327), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 58/515 (11%), Positives = 142/515 (27%), Gaps = 43/515 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   +V++  +    G                FP+A                        
Sbjct: 11  NRGLVVLIAVVTTVFGAFAVPSLKQQLLPSLEFPAAFIVAS--------------YPGAG 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +              + R+    I + +      + + +++   L   
Sbjct: 57  PEAVESQVTEPIENSLQGTTGLEKITSTSREGSATIQVEYEFGTDVDAVVNQLQAALNQA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + +L       ++   T+   ++VL+ +  +            +    + ++   E    
Sbjct: 117 DVQLPEGVDPQVVAGGTDDLPAVVLAASGGEDQRV----LGERLRDTVVPELAAIEGVRT 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    +P++L       +                                
Sbjct: 173 VDMTGTRDEVVVITPNPTKLAAAGIRPSAFGGALRANG--------------------VT 212

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     + G             T   +  I      A          + + L+       
Sbjct: 213 VPAGAVVDGQQTLPVQVGTPLTTLDELRGIILTVAPAAPVRLGDVATVEEGLSPATAITR 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +     +     +      A LR          V          S    
Sbjct: 273 TNGQDSLGIAVTATPDGNAVEISQEIRERLAGLR--VASGAELTVVFDQAPFVEKSIKSL 330

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I   +  +V+ + +L  +  +V   SI L+V++ L  L +   +L L ++  + +
Sbjct: 331 TTKGLIGLVMAAVVILVFLLSVRSTVVTAVSIPLSVLVALIALWVGDYSLNLLTLGALTI 390

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G  VD +I+V E I+      +S   ++          +  S +T +     +   G 
Sbjct: 391 AVGRVVDDSIVVLENIKRHLEYGESKQEAIPTAVREVAGAVTASTLTTVAVFAPIALVGG 450

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G     FAIT+ +++L S+  +++++  +  + 
Sbjct: 451 FVGQLFTPFAITVTVALLASLLVSLTLIPVLAYWF 485



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 64/142 (45%), Gaps = 9/142 (6%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           + L  KG++G++++A+ +L+++         +    ++ L +   L    +     NL  
Sbjct: 328 KSLTTKGLIGLVMAAVVILVFLL---SVRSTVVTAVSIPLSVLVALIALWVGDYSLNLLT 384

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+   +G  V+D +VV + ++   +      S ++ I  ++ E  G    +++     
Sbjct: 385 LGALTIAVGRVVDDSIVVLENIK---RHLEYGESKQEAIPTAVREVAGAVTASTLTTVAV 441

Query: 783 VLPMAVWG---GSVIGSFAIPM 801
             P+A+ G   G +   FAI +
Sbjct: 442 FAPIALVGGFVGQLFTPFAITV 463



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 70/184 (38%), Gaps = 8/184 (4%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                 DGE++  V       +    ++ L+     I        +        +   +L
Sbjct: 788 QQITRIDGERSVSVTGTATGSNLGETSQELQERLDAIDIPGATFVVGGVSADQEEAFADL 847

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                + V+ +   + + + + F+    AL  + ++    T  +G   + G    + A+ 
Sbjct: 848 ----GLAVLAAIAIVFLIMVVTFRSLTQALILLVSVPFAATGAVGLLLVTGTPLGVPALI 903

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            VL L+G  V + +V+ D + +        +  R+ + +     L   + T++A   ++L
Sbjct: 904 GVLMLVGIVVTNAIVLLDLVNQYRAQ---GLGIREAVVEGGRRRLRPILMTAVATIFALL 960

Query: 785 PMAV 788
           PMA+
Sbjct: 961 PMAL 964


>gi|313202409|ref|YP_004041067.1| acriflavin resistance protein [Methylovorus sp. MP688]
 gi|312441725|gb|ADQ85831.1| acriflavin resistance protein [Methylovorus sp. MP688]
          Length = 1067

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 66/677 (9%), Positives = 175/677 (25%), Gaps = 38/677 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V++  ++  +G+L AL     +   D FP                        
Sbjct: 9   LKRPYTFVVMAILLLIMGILSAL-----RMPTDIFPEIRIPVI---------AVAWQYTG 54

Query: 61  DEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              D + G +       L + +        +       + + F           +VT   
Sbjct: 55  MPPDQMAGRIATVYQRVLTTTVNDIEHIEANSYNGFGIVKIFFQPGVNIATANAQVTAVS 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q +  ++       L++  +   + I+    +   +     +     +     ++     
Sbjct: 115 QVILRQMPTGVTPPLILNYSASTVPILQIALSGKGLSEQ--QLGDLGLNTIRTRLVTVPG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       Q+  + +P+ L+        ++      N         +         
Sbjct: 173 AAVPYPFGGKTRQVQIDLNPTALQARGLAAQDVANALAAQNLILPVGTQKI--------- 223

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                      G+       N        + +     +     +      +        +
Sbjct: 224 -----------GVQEYTLQLNNAAGAMDDIGNFPIKVVNGATVYIRDVATVRDGNPPQSN 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +                S    +         ++         +           + 
Sbjct: 273 IVHVDGAKSVLMSVLKNGATSTLDIVSGVKARLQEIKPTLPDNLEAVPINDQSIFVRAAV 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                  AI A L  +++ + +   +  ++   SI L+++  +  L+  G TL + ++ G
Sbjct: 333 KGVAFEGAIAAVLTSLMILLFLGSWRSTVIIAVSIPLSILGAIFALNAFGETLNIMTLGG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   +  E I     + + V  ++  G ++  +  F S +   I  V +F 
Sbjct: 393 LALAVGILVDDATVTIENINWHLEQGKQVEPAILDGAAQIVTPAFVSLLCICIVFVPMFL 452

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G + R   + M  +++ +M ++  + R ++  + +Y          L           
Sbjct: 453 LEGVS-RFLFVPMAEAVIFAMVSSFILSRTLVPTMAKYLLKPHAPHTDLHGTHATLPPSR 511

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
              +R +                 L     N      G +   +L+   V          
Sbjct: 512 NPLVRFQRGFEARFERVREGYHGWLHVAMRNRKKFVIGFMAFVMLSFALVPFLGRNFFPA 571

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                 +                       A   V+   +           I +  +   
Sbjct: 572 VDGGQILMHVRVPVGTRLEETAAQFADIQAAIREVIPAHEIVTMVDNIGQPISSINLTYN 631

Query: 660 KISRELIRKGIVGVIIS 676
                  + G + + ++
Sbjct: 632 NTGIIGAQDGDIQIALA 648



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 76/241 (31%), Gaps = 8/241 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R                  +    V +      + +   ++  VK ++ EI P      
Sbjct: 257 IRDVATVRDGNPPQSNIVHVDGAKSVLMSVLKNGATSTLDIVSGVKARLQEIKPTLPDNL 316

Query: 654 TEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             +     S  +          G I + +  L+ +     W   +    ++ L I   + 
Sbjct: 317 EAVPINDQSIFVRAAVKGVAFEGAIAAVLTSLMILLFLGSWRSTVIIAVSIPLSILGAIF 376

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               FG   N+  +  +   +G  V+D  V  + +                I     + +
Sbjct: 377 ALNAFGETLNIMTLGGLALAVGILVDDATVTIENIN---WHLEQGKQVEPAILDGAAQIV 433

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +  + +   I  +PM +  G     F +PMA  ++ A  SS  ++  ++  +  +  K
Sbjct: 434 TPAFVSLLCICIVFVPMFLLEGVSRFLF-VPMAEAVIFAMVSSFILSRTLVPTMAKYLLK 492

Query: 830 N 830
            
Sbjct: 493 P 493



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 66/166 (39%), Gaps = 8/166 (4%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            + G++ + + + + I + F  W      ++ L   I   +          ++ A+   + 
Sbjct: 893  LFGLLGAIVLIYLLIVVNFQSWSDPFVIVSALPAAIAGIIWMLFATFTPLSVPALTGAIM 952

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G +  + V+V    R+  +L     +    ++          + T++A  I + PMA+
Sbjct: 953  CMGVATANSVLVISFARE--RLEVLGDATAAALEAGFVR-FRPVLMTALAMMIGMAPMAL 1009

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                GG         +  G++ A ++++ I  P++  +   R K A
Sbjct: 1010 GLGEGGEQNAPLGRAVIGGLLFATTTTL-IFVPVVFSMVHARFKPA 1054


>gi|114330990|ref|YP_747212.1| acriflavin resistance protein [Nitrosomonas eutropha C91]
 gi|114308004|gb|ABI59247.1| acriflavin resistance protein [Nitrosomonas eutropha C91]
          Length = 1028

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 65/611 (10%), Positives = 163/611 (26%), Gaps = 50/611 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +    ++  ++  +G++        +  +DR+P                     L   
Sbjct: 9   KRHVLAWMVSGLLVLLGVIS-----YQRIGMDRWPYIEFPVI---------SVTTTLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V+  +    +   + +        S     +  T++F   +  +   ++V   +  
Sbjct: 55  NPDIVDASITGIIETAINTIPGIEHVQSSSSPSVSTTTITFVLDKNIDVAYNEVQANISQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L  D    ++         ++       Q      + ++        ++   +   
Sbjct: 115 ILKRLPDDTDPPIVRKIETNAQPVMWLSL---QGDRTLQQLNLYGFNVIKKKLETIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R    +     P R+       + +       +    G     +          
Sbjct: 172 EVRLGGRRDRTIRINVLPERMATYNLAASDVINAFRREHIQLPGGFLTGK---------- 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                         I     GA    +   +            R
Sbjct: 222 ---------NTERLIKLDLEFHNLKDVGNLIVAYREGAPIRLKEIAEIADDLADYRQVAR 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P +   I       +     E    LA  +     P     +   +          
Sbjct: 273 FNGLPSLGLGIVKVSNANTVAIIDEVERRLAEDINPSLPPGMRISISSSDAIFIKELVYA 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        L  +++++ +   +  L+   +I ++++  +A++   G T    ++  ++
Sbjct: 333 LQEHLVEGTLLAALIVWLFLRSVRSTLIIATAIPVSLMGAIAVMYFSGFTFNTMTLLALL 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNI-TALIAT 474
           L IG+ VD  I+V E I     ++Q       V  +   G       +  + +    I  
Sbjct: 393 LLIGVVVDDAIVVLENIFRHMSRDQARHGKVDVVAASIRGSHEVVFAVMAATLALVCIFA 452

Query: 475 VVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            V+F  G  G   + FA+ +   +LIS+  ++++   +    +R  +        L  +F
Sbjct: 453 PVIFMEGIIGKFFKSFAVVVTFGVLISLLVSLTLTPMLCSRYLRVDRKHGRLYYWLDNWF 512

Query: 533 LIPDCIA-----IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
              D                  V   I+                    +G   +      
Sbjct: 513 DRMDQRYVLLLTFSIQHRWKVIVLTIIMVLSSIFFFGKVDKEFSPETDEGVFTITFRTPL 572

Query: 588 PVDLSVVRSNL 598
              +    S L
Sbjct: 573 GSSIDYTDSRL 583



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/218 (16%), Positives = 85/218 (38%), Gaps = 11/218 (5%)

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-----ISAIAML 681
            +     +++ V++++ E +  S      I         I++ +  +       + +A L
Sbjct: 287 SNANTVAIIDEVERRLAEDINPSLPPGMRISISSSDAIFIKELVYALQEHLVEGTLLAAL 346

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           I           L   T + + +   +      G  FN   + A+L LIG  V+D +VV 
Sbjct: 347 IVWLFLRSVRSTLIIATAIPVSLMGAIAVMYFSGFTFNTMTLLALLLLIGVVVDDAIVVL 406

Query: 742 DRMRKNMKLYTTSISFRDLIDKSIN--ETLGRSVYTSMAAFISVLPMAVWGGSVI----G 795
           + + ++M          D++  SI     +  +V  +  A + +    ++   +I     
Sbjct: 407 ENIFRHMSRDQARHGKVDVVAASIRGSHEVVFAVMAATLALVCIFAPVIFMEGIIGKFFK 466

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           SFA+ + FG++++   S+ +   +         K+ R+
Sbjct: 467 SFAVVVTFGVLISLLVSLTLTPMLCSRYLRVDRKHGRL 504



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 64/156 (41%), Gaps = 9/156 (5%)

Query: 674  IISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
            I +   +L+Y+ +  ++  F    I  +   +    G FAL   G   N+ ++  ++ LI
Sbjct: 860  IFTLALILLYMVLASQFNSFLQPLIIMVAQPLAIIGGIFALWLTGNSLNIFSMIGLVLLI 919

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + +++ D      +L     S    + ++    L   + TS+   +++LP A+  
Sbjct: 920  GLVAKNSILLID---LTNQLREQGKSIDAALKEACPIRLRPVLMTSLTVILALLPAAMGL 976

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              G       A+ +  G+V +   ++ +   +   +
Sbjct: 977  GAGAETNRPLAVAVIGGMVSSTLLTLVVVPAVYSLV 1012


>gi|327405682|ref|YP_004346520.1| acriflavin resistance protein [Fluviicola taffensis DSM 16823]
 gi|327321190|gb|AEA45682.1| acriflavin resistance protein [Fluviicola taffensis DSM 16823]
          Length = 1030

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 58/571 (10%), Positives = 166/571 (29%), Gaps = 40/571 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++L+S+   +G +            +  P       +            V    
Sbjct: 9   KRPSLIIVLFSVFTLLGFI-----GYKNLSYELMPDFNQPVVV---------IKTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           E + V   +    ++  S L+     V       + I  +       +        ++  
Sbjct: 55  EPNEVETSVSRKIEDALSNLEGVDYLVTKSLPNASIIIANLKYGTDLDKSMQDAQRYIDN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D    ++   +  ++ I+      D     A E   ++    + QI   +   
Sbjct: 115 IRKDLPQDILSPVMSKVSPNDLPIMSISATSD---LSATEFYQKMKDDYLPQIQQIKGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  + +  +L+    +  ++                      +S     
Sbjct: 172 EITVLGGEEREIQVKINQDKLKLYKISMVQVVEAINRSGLDLPAGKVQTEKESNS----- 226

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V ++G   +             +             +     ++   +       
Sbjct: 227 -----VRLTGKFASIEDIKNVQVAMPVL---------GSPVYVKDIADVIDGIKETTSIS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE-ERNVGADLGSDS 360
                     +   +   +     +        +   +    +  +  + +    + + +
Sbjct: 273 RYNGKNCIGLMLKKQGDANAVDVSKAVREKFQSIEQQNASSGVKFIIADDSTDNTIAAVN 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +V+ + +   +  L+   +I  +++   A++ LLG TL L ++  +
Sbjct: 333 SVVFDLILAVLLVSLVMLLFLRSFRNSLIVLVAIPTSLVTAFAVMWLLGYTLNLMTLLAM 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVL 477
            L IG+ VD   +V E I++   K +    +   G      A  +I   ++   +  + L
Sbjct: 393 SLIIGILVDDATVVLENIQKHLDKGKDKRTAAMDGRMEIGFAALSITLVDVVVFLPILFL 452

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
             F    ++ F++ +  S L S+    ++   M   I + + ++  +       +     
Sbjct: 453 QVFVADMLKQFSVVVVTSTLTSLLVGFTLTPWMASRIGKKEDLQPTNFFNRFLLWFEIQL 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHG 568
                   R     +S   +   I ++    
Sbjct: 513 ENFNEWYGRRLEWVLSHKLAFTGIVIVLFAM 543



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 84/263 (31%), Gaps = 9/263 (3%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +    + V          V+   + +     +           + L  +         V 
Sbjct: 237 EDIKNVQVAMPVLGSPVYVKDIADVIDGIKETTSISRYNGKNCIGLMLKKQGDANAVDVS 296

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII-----SAIAMLIYIWIRFKW 690
           + V++K   I   +     + +    S +     +  V+        +  L+ +     +
Sbjct: 297 KAVREKFQSIEQQNASSGVKFIIADDSTDNTIAAVNSVVFDLILAVLLVSLVMLLFLRSF 356

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             +L  +  +   +        L G   NL  + A+  +IG  V+D  VV + ++K++  
Sbjct: 357 RNSLIVLVAIPTSLVTAFAVMWLLGYTLNLMTLLAMSLIIGILVDDATVVLENIQKHLDK 416

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                +        I           +  F+ +L + V+   ++  F++     +V +  
Sbjct: 417 GKDKRTAAMDGRMEIGFAALSITLVDVVVFLPILFLQVFVADMLKQFSVV----VVTSTL 472

Query: 811 SSIFIAAPILLFIYDWRAKNARI 833
           +S+ +   +  ++     K   +
Sbjct: 473 TSLLVGFTLTPWMASRIGKKEDL 495



 Score = 38.1 bits (86), Expect = 5.9,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 92/254 (36%), Gaps = 6/254 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +    P+ + V  S   S++  +        ++   V L        + T   ++V   
Sbjct: 778  QLSIINPMGIPVEVSQFASVEQDNSPSLLERKDRQPAVTLTADALGRPSGTVADDVVAYL 837

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                +P            + +      G V +I   +  LI + +   + +    + ++ 
Sbjct: 838  KENPLPNGIQMTWGSDIKRQNDSFGALGSVLLISFLLIYLIMVALYDSFVYPFVVLFSIP 897

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            +          L     +L A+  ++ L+G  V + +++ D      +L      F++ +
Sbjct: 898  VAAIGAFFALNLSLSNLSLFALLGLIMLMGLVVKNAILIVDF---TNQLKAEGKHFKEAL 954

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAP 818
              +    +   + T+++  + +LP+A+  G+        A  +  G++ +   ++F+   
Sbjct: 955  IIAGKGRMRPILMTTLSMVVGMLPIAMATGTAAEWKNGLAWVIIGGLLSSLILTVFLVPM 1014

Query: 819  ILLFIYDWRAKNAR 832
            +   +   + K ++
Sbjct: 1015 VYYLVDTAKEKISK 1028


>gi|218529019|ref|YP_002419835.1| heavy metal efflux pump, CzcA family [Methylobacterium
           chloromethanicum CM4]
 gi|218521322|gb|ACK81907.1| heavy metal efflux pump, CzcA family [Methylobacterium
           chloromethanicum CM4]
          Length = 1048

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 75/609 (12%), Positives = 175/609 (28%), Gaps = 51/609 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   ++ + S++   G          +  +D FP                   ++ E 
Sbjct: 10  LKNRLLVLAIASVLVLFGAFTV-----TKLPVDVFPDLNRPT-----------VTIMTEA 53

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           +      V   +    +   + L              + + + F           ++   
Sbjct: 54  EGYAPPEVEQLVTYPIETRMNGLPGVSRVRSVSGVGLSIVYVEFDWGTDIYRNRQQIAER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L  V  +L       +   ++     ++++  +         E +  +IR    ++    
Sbjct: 114 LSLVQDQLPRGVAPVMGPISSIMGQILLVAVTSETATPMQVREAADFVIR---PRLLTIP 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q +     + Q     +P+ +R L  T A++         +  G             
Sbjct: 171 GVAQVIPIGGEVRQFRVAPNPAAMRTLGVTNAQLEASLQQFGTNAGGGFTDQNAREYLIR 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           N     D  ++  + +               V            ++     I        
Sbjct: 231 NIARTLDLDDLRNVVVTTVNNTPVYLRQIAEVSFGARVKRGDAGYQGKPAVIVSVEKQPD 290

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              V     I QA                   L  + +     IK + +  R       S
Sbjct: 291 VDTVKLTGQIQQA-------------------LGEITQTLPDGIKADQILFRQANFIETS 331

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            S  +        +V  VLF+ +L  +   ++  +I ++++ T  +  L G ++   ++ 
Sbjct: 332 ISNVERVLLEAIVVVAAVLFLFLLNVRTTAISLLAIPVSILTTAVVFHLFGLSINTMTLG 391

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALI 472
           G+ + IG  VD  ++  E I     +N+      SVF  +    +   S I  + +  ++
Sbjct: 392 GLAIAIGELVDDAVVDVENIFRRLGENRKAGNPKSVFQVVVEASNEVRSGIVYATMIIIL 451

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR--YKKMKSIDINP 527
             V LF      G           +SIL S+ T+I++   +  +++       +      
Sbjct: 452 VFVPLFALSGIEGRLFAPLGQAYIISILASLVTSITLTPVLASWLLPGLKNLEEHDSRFL 511

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +   F   R     +++      +              +G   + +  N 
Sbjct: 512 KLLKRGNAALLRGAFRHQRLLVGMVAVAVLGAGVAAWQLPRAFLPPFNEGSFTVNMTFNP 571

Query: 588 PVDLSVVRS 596
            + L+    
Sbjct: 572 GISLAESNR 580



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/210 (15%), Positives = 75/210 (35%), Gaps = 11/210 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +         Q  + E+ +     I     +             + R  +  +++ A  +
Sbjct: 291 VDTVKLTGQIQQALGEITQTLPDGIKADQILFRQANFIETSISNVERVLLEAIVVVAAVL 350

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++           ++  + + I  T   F LFG+  N   +  +   IG  V+D VV 
Sbjct: 351 FLFLL---NVRTTAISLLAIPVSILTTAVVFHLFGLSINTMTLGGLAIAIGELVDDAVVD 407

Query: 740 ---VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
              ++ R+ +N +      S   ++ ++ NE     VY +M   +  +P+    G     
Sbjct: 408 VENIFRRLGEN-RKAGNPKSVFQVVVEASNEVRSGIVYATMIIILVFVPLFALSGIEGRL 466

Query: 797 FAI---PMAFGIVVAASSSIFIAAPILLFI 823
           FA         I+ +  +SI +   +  ++
Sbjct: 467 FAPLGQAYIISILASLVTSITLTPVLASWL 496


>gi|255036320|ref|YP_003086941.1| acriflavin resistance protein [Dyadobacter fermentans DSM 18053]
 gi|254949076|gb|ACT93776.1| acriflavin resistance protein [Dyadobacter fermentans DSM 18053]
          Length = 1048

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 71/698 (10%), Positives = 189/698 (27%), Gaps = 56/698 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    +++L++++   GL                P+                   +   
Sbjct: 8   LKRPSMIIVLFAILFIGGLASYNQLSYVLLPEFSVPTITITT--------------LYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    ++  S L           +  + + + F      +   +     + 
Sbjct: 54  AAPTEVEAEVSKKIEDAVSGLDNIEDVTSKSMESASLVIVQFKAGTDIDKALEDAQRDVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S L  D +   L   +  +  I+              +Q   +  + +  +   E  
Sbjct: 114 NMLSDLPDDAETPSLSKISPSDQPIMQLLATSSLPNEVFYQQ---VEDKYLPMLQQIEGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +     ++    +  +LR    +  +++                      +  N 
Sbjct: 171 AEITMTGGDQREIRINVNNDKLRFYGLSLLQVTQAI-------------------NQANL 211

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                KV+ +  ++    A            +    +           NI   L      
Sbjct: 212 DFPTGKVKSTSENMTLRLAGKFASLDDIRNLVITSPVSGSPIRVGDVANITDGLTDAESI 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI-VEERNVGADLGSD 359
                          ++  +     +T     A +   +   K+   +   +    L S 
Sbjct: 272 SRYNGVNGIGLFIKKQSDANAVEISKTVQEKLASIEKVNAKDKVKFAIAYDSSIFTLESV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   I   LV +V+ + +   +   +   S+  ++I     + ++G +L L ++  
Sbjct: 332 EAVTHDLVIAVILVAVVMLLFLHSFRNAFIVMVSVPASLIAAFLFMYVMGYSLNLMTLLA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L IG+ VD +I++ E I+      ++ + +   G +          +  ++  V +  
Sbjct: 392 LSLVIGILVDDSIVILENIQRHLEMGKNRWDATVEGVTEIGFAALAITLVIVVVFVPITM 451

Query: 480 FGGGAV---RGFAITMGLSILISMFTAISIVRAMM----------------IFIIRYKKM 520
                    R F++T+  + ++S+  + ++   M                  F+I ++K 
Sbjct: 452 VNSVIADLLRQFSLTVAFATMVSLLVSFTLTPWMTSNMAKVEHLNPKNPAQAFLIWFEKG 511

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
            +                 + F       V ++       I             F   ++
Sbjct: 512 LTALTKWYHGSLQWVLGHKLAFSGILVAIVVMTGWVMSLGIIGSEFVAEGDQGKFLLTMK 571

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L   A+   +    RS  + L+        F         L         +T +   +  
Sbjct: 572 LDKSASLQQNNLTARSIEDYLRQKPEVKTIFANVGGASTGLSSSGRGETNRTELTVELTP 631

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
                    T      V  ++ ++          I  +
Sbjct: 632 VSERQNAQPTEDYMLAVRKELEQKFAGVEFNSAAIGMV 669



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 59/140 (42%), Gaps = 6/140 (4%)

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
            +     +  A   + ++   +     F  + G   NL  + A+  +IG  V+D +V+ +
Sbjct: 349 MLLFLHSFRNAFIVMVSVPASLIAAFLFMYVMGYSLNLMTLLALSLVIGILVDDSIVILE 408

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAI 799
            +++++++        D   + + E    ++  ++   +  +P+ +       ++  F++
Sbjct: 409 NIQRHLEMGKNRW---DATVEGVTEIGFAALAITLVIVVVFVPITMVNSVIADLLRQFSL 465

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +AF  +V+   S  +   +
Sbjct: 466 TVAFATMVSLLVSFTLTPWM 485



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/251 (13%), Positives = 83/251 (33%), Gaps = 7/251 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +    PV    V+    +           + +              +    ++  ++  +
Sbjct: 781  ITFYSPVAKQSVQLAQFADVTLSTGPSIVERKNRRSSVTVTANTLGIGSGTLVSNIQAGL 840

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLI 701
             E      I  T     K   E      + ++   + +  I + +   + +    + ++ 
Sbjct: 841  KENPLPDDIILTWGGDAKNQSEGFGSLGLAMLAGLMLVYFIMVLLYDSFVYPFVVLFSIP 900

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            + +   L   AL      + A+  +L LIG  V + +++ D      +     + FR  I
Sbjct: 901  VAVIGALLALALSSSNIGIFAMLGMLMLIGLVVKNAILIVDFAN---QQKAEGVPFRKAI 957

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
              +  E L   + T++A  I ++P+A     G     S A  +  G+  +   +I++   
Sbjct: 958  LTAGEERLRPILMTTIAMVIGMVPIATATGAGAEWKNSLAWVLIGGLTSSMILTIYLVPM 1017

Query: 819  ILLFIYDWRAK 829
                +     K
Sbjct: 1018 AYYLVDRLGEK 1028


>gi|149926780|ref|ZP_01915040.1| AcrB/AcrD/AcrF family protein [Limnobacter sp. MED105]
 gi|149824709|gb|EDM83925.1| AcrB/AcrD/AcrF family protein [Limnobacter sp. MED105]
          Length = 1018

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 60/520 (11%), Positives = 152/520 (29%), Gaps = 34/520 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  + ++++ ++  IG+     +          P                  +++    
Sbjct: 9   KNYQFTLVIFFLLTAIGI-----SAYQNIPRTEDPYFDISAFR---------INVIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    ++    L      + + R     + + F      +   D+V   L  
Sbjct: 55  DPREMEQQVAKPIEDALRSLDDLKEMLSTSRNSGGVVFVRFDAEVDVDKKFDEVNRELNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L    +K  +        +I+      +      +    E      +      S  
Sbjct: 115 IRDQLPAGIQKLEIERINPGFTNIIQYSLVSETASYADLANYAE---DLSEAFERISSVR 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         Q+    +  +L +L    A ++      + +  G        R +     
Sbjct: 172 ESESWAYPEQQVRVSLNFKKLAELGIQAADVARVIQGESLNIPGGPVEEGARRLNVQTSG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 EI    +                  +  ++G R        ++           
Sbjct: 232 QYRSVEEIRNTVI--------------AGTGTGGDLGGRLVRVGDVADVQWDYENQEVMA 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + K + +   T +     A        P                    
Sbjct: 278 RFNGQRAVFVTANQKDERNIFVTQKALQETADEFEKTLPPNIKMERGFEQYKNVEKRIDR 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     + L+++ ++ L  +   +   S+ L+++  LA L   G +L   SIAG+V
Sbjct: 338 LTFD--FALAVTLVLITLLPLGLRASGIVMVSVPLSLLTGLACLYYAGFSLNQLSIAGLV 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +GL VD +I+V E I    R   +   +  +   +    +     T L A + L    
Sbjct: 396 VALGLLVDDSIVVIENISRYLRMGYNRVDAARLATKQISLAVVGCTATLLFAFLPLLMLP 455

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             A + F  ++ ++++ ++  ++ +   ++ F+      K
Sbjct: 456 DNAGK-FIRSLPVAVVFTVIASLFVALTIIPFLASRVLKK 494



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 19/290 (6%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
            AR   V  S  +                    GG  + V     V        + +   
Sbjct: 221 GARRLNVQTSGQYRSVEEIRNTVIAGTGTGGDLGGRLVRVGDVADVQWDYENQEVMARFN 280

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
           G  +      +K+       Q           + +   I         +N E    +++ 
Sbjct: 281 GQRAVFVTANQKDERNIFVTQKALQETADEFEKTLPPNIKMERGFEQYKNVEKRIDRLTF 340

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
           +        + ++ + + +   +      +   + ++ L +   L      G   N  ++
Sbjct: 341 DF------ALAVTLVLITL---LPLGLRASGIVMVSVPLSLLTGLACLYYAGFSLNQLSI 391

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A ++  +G  V+D +VV + + + +++    +   D    +  +     V  +     + 
Sbjct: 392 AGLVVALGLLVDDSIVVIENISRYLRMGYNRV---DAARLATKQISLAVVGCTATLLFAF 448

Query: 784 LPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           LP+ +     G  I S  + + F ++     S+F+A  I+ F+     K 
Sbjct: 449 LPLLMLPDNAGKFIRSLPVAVVFTVIA----SLFVALTIIPFLASRVLKK 494



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 92/247 (37%), Gaps = 12/247 (4%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                      +V  + L +L++ D     +  ++   V L           ++   + K+
Sbjct: 772  DFHVISRTGQAVPLTQLTTLELDDNLNSIYRFDRERAVLLTAYTRTGYNTEKISNEIAKQ 831

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
            I E+   +  +       K  +E        ++I+   +L  + + F  + +   I   +
Sbjct: 832  IDEMGLPTGYRYKMAGEVKSRQESFAGFGTAILITVFGILAILVLEFGSFKS-TLIVLFV 890

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSIS 756
            + +  T G   LF  G   + TA+   + LIG  + + +++ D   ++R+          
Sbjct: 891  IPLGVTGGMVMLFLTGNSLSFTAMIGFIALIGIEIKNSILLVDFTNQLREE------GKG 944

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              + I+++        + TS  A   ++P+A+ GG +    A  +  G++ +      + 
Sbjct: 945  LDESIEEAGRIRFLPILLTSATAVGGLMPLALQGGGLYSPMAWVIIGGLISSTFIGRLVT 1004

Query: 817  APILLFI 823
              +   +
Sbjct: 1005 PVLYKLL 1011


>gi|153837832|ref|ZP_01990499.1| cation efflux system protein CusA [Vibrio parahaemolyticus AQ3810]
 gi|149748774|gb|EDM59617.1| cation efflux system protein CusA [Vibrio parahaemolyticus AQ3810]
          Length = 1046

 Score =  130 bits (326), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 65/529 (12%), Positives = 148/529 (27%), Gaps = 39/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN ++V++ +++  +  L ++ N    + +D  P       I                  
Sbjct: 11  NNRFMVLIATLMLVLAGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL    K  L    T                     E           ++   +   +
Sbjct: 118 APKLPPSAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVVEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P        +
Sbjct: 237 LTSIEDIK------------------SLPLKVTDKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I         L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRYGENASVVISKVKDKLEDLQRSLPDGVEIVTTYDRSTLINAAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILAAFIVMHSQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                 G      A T   ++  +   AI++V  +M + IR K +    
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMASAAALAITLVPVLMGYFIRGKILPEHK 507



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 76/291 (26%), Gaps = 22/291 (7%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  + +                 +    L       V++
Sbjct: 816  WVFVDIDGRDLGSYVVEAQQAVADQLVLPAGYSLAWSGQYEYMERAKDRL------SVVV 869

Query: 676  SAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGY 732
                ++I + + F +       I  L L +    G          F++      + L G 
Sbjct: 870  PITLVIIMMLLYFSFRRVGEVLIIMLTLPLAMVGGLWLMHYLNYNFSIAVGVGFIALAGV 929

Query: 733  SVNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
            +V   V++   +           +  +         D I +     +   + T +   I 
Sbjct: 930  AVEIGVIMLVYLNQAWHHKKLHAEENQQALQIGDLTDAIREGAGLRVRPVMMTVLTVIIG 989

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++P+      G  V+   A PM  G+  A   ++ +   I           
Sbjct: 990  LIPIMYGSGTGSQVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQREVNK 1040



 Score = 46.2 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 32/208 (15%), Positives = 67/208 (32%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++   + +   +P      T  
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRYGENASVVISKVKDKLEDLQRSLPDGVEIVTTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLINAAVDNLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILAAFIVMHSQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|254479352|ref|ZP_05092689.1| protein-export membrane protein SecD [Carboxydibrachium pacificum
           DSM 12653]
 gi|214034718|gb|EEB75455.1| protein-export membrane protein SecD [Carboxydibrachium pacificum
           DSM 12653]
          Length = 368

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 116/384 (30%), Positives = 218/384 (56%), Gaps = 28/384 (7%)

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           + + +     V   AI +++ +IR R+D +G+++  I + GS+RI ++LPG +DP +  +
Sbjct: 9   VYVLEEAQGNVTQDAINKAIAVIRNRVDALGVTQPVIAQQGSNRIRVELPGMKDPDKAIE 68

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA++ F                             + KV ++G ++  + A +   
Sbjct: 69  IIGKTAQLKF--------------------------VGPDGKVILTGANVKDSKAVYAQT 102

Query: 265 T--HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
           +   +P V +  D  G ++F E T+  +G+P+A++LD +V++AP +   I +G A I+G 
Sbjct: 103 STGQQPEVTLVLDAEGTKKFAEATKKFLGQPIAILLDDKVISAPTVRDVITTGNAVITGL 162

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
              + A  LA ++RAGSLP+ L  +   +VGA LG  ++     A + G +L++LFM+  
Sbjct: 163 KDFQEASELATLIRAGSLPVTLKPIAYSSVGATLGPSALKASVEAGIYGTLLVMLFMMAF 222

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G +AD ++ + +++   + ++   TL LP IAG +L IG+AVD+NIL+ ER +EE 
Sbjct: 223 YRLPGFIADLALLIYILINFIIYAIFNVTLDLPGIAGFLLSIGMAVDTNILIFERFKEEL 282

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
              +++  +LD GF++A   + D+N+T +I  ++LF+ G G V+GFA+T+ + +  S+FT
Sbjct: 283 WAGKTIRPALDAGFAKAMRAVIDANVTTIIGAIILFYLGSGNVKGFALTLLIGVSSSLFT 342

Query: 503 AISIVRAMMIFIIRYKKMKSIDIN 526
           AI++ R ++  ++     ++I   
Sbjct: 343 AITVTRFLLHALLEMDLTRNIKFY 366



 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 73/172 (42%), Gaps = 4/172 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VG  +    ++  +   I   + +++++   ++      A   L++ I      +A+
Sbjct: 189 YSSVGATLGPSALKASVEAGIYGTLLVMLFMMAFYRLP-GFIADLALLIYILINFIIYAI 247

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F +  +L  +A  L  IG +V+  +++++R ++ +       + R  +D    + +   +
Sbjct: 248 FNVTLDLPGIAGFLLSIGMAVDTNILIFERFKEELWA---GKTIRPALDAGFAKAMRAVI 304

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             ++   I  + +   G   +  FA+ +  G+  +  ++I +   +L  + +
Sbjct: 305 DANVTTIIGAIILFYLGSGNVKGFALTLLIGVSSSLFTAITVTRFLLHALLE 356



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 37/111 (33%), Gaps = 2/111 (1%)

Query: 47  GLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADS 105
           GLDLRGG +++ E    +     +      +R+ +   G+    + +Q  N+I +     
Sbjct: 2   GLDLRGGVYVLEEAQG-NVTQDAINKAIAVIRNRVDALGVTQPVIAQQGSNRIRVELPGM 60

Query: 106 RFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI 156
           +  +   + +    Q      +             K +    S     +V 
Sbjct: 61  KDPDKAIEIIGKTAQLKFVGPDGKVILTGANVKDSKAVYAQTSTGQQPEVT 111


>gi|221067055|ref|ZP_03543160.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
 gi|220712078|gb|EED67446.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
          Length = 1047

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 89/655 (13%), Positives = 191/655 (29%), Gaps = 54/655 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N  +++   +++   G++ A+     ++ +D FP       +   L   GG       
Sbjct: 10  LHNRLFVLAFAAILMVYGIITAV-----KTPVDVFPDL--NKPLITVLTEAGGM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   + +              + +   F            V   L 
Sbjct: 57  -APEEVEQLVTFPIETALNGMPGVTRVRSMSGVGLSILYAEFDWGTDIYRNRQLVAERLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQ-------NNIDQVISHAIEQSMEIIRQRIDQ 173
            V  +L  D    +   ++     ++L+                 A E +  ++R    +
Sbjct: 116 LVRERLPADVVPVMGPVSSIMGEVMLLALPLNVGEKGASAATPMQAREYADFVLR---PR 172

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   Q +     + QL  E D +R+ Q   T +++         +  G        
Sbjct: 173 LLAVQGVSQVIPIGGEVRQLRVEPDTARMAQFGVTLSQLEAALKGFAGNAGGGF------ 226

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                        ++++             K             G     E   +    P
Sbjct: 227 -------------IDLNSREYLIRHIGRTNKVEDLQSAAVAWRDGRSIRLEQVANVRFAP 273

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                DG    +P +  ++       +   T +    L  + +     I       R   
Sbjct: 274 AMKRGDGGYNGSPAVIVSVQKQPEADTVRVTRDIEQALRELSKGRPEGINEPRALFRQAD 333

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S           A +V IVLF  +L  +  L++  +I L++  T  +   LG ++ 
Sbjct: 334 FIEASIGNVTEALRDGAIMVAIVLFAFLLSARTTLISLVAIPLSLAATALVFHWLGQSIN 393

Query: 414 LPSIAGIVLGIGLAVDSNILVNERI------REENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           + ++ G+ + IG  VD  ++  E I        E          +        S I  + 
Sbjct: 394 VMTLGGLAIAIGELVDDAVVDVENILRRLKQNREQEHPMPTLEVVRKASVEVRSGIVYAT 453

Query: 468 ITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              ++  V LF      G       I   +SIL SM  ++++   +  +++   K     
Sbjct: 454 AIVVLVFVPLFALPGVEGRLFSPLGIAYIISILASMLVSMTVTPVLCSYLLPRMKRIDHG 513

Query: 525 INPLSRFFLIPDCI--AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +P+ R     D    A  F R++           I      F          +G + LG
Sbjct: 514 DSPIVRRLKHWDEKLLAWSFPRSKALMATALAAVVIALASAPFFPRAFLPAFNEGSLVLG 573

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           ++ N    L+         +   +             R +         +  +++
Sbjct: 574 MVFNPGTSLAEANRMGSLAETLIMEVPEVTQVGRRTGRAELDEHAEGVHSAEIDV 628



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 86/262 (32%), Gaps = 14/262 (5%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           ++ G  + +     V  +      +    G  +      ++     ++       A   +
Sbjct: 255 WRDGRSIRLEQVANVRFAPAMKRGDGGYNGSPAVIVSVQKQPEADTVRVTRDIEQALREL 314

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
            +   + I E   L    +          E +R G + V I   A L+           L
Sbjct: 315 SKGRPEGINEPRALFRQADFIEASIGNVTEALRDGAIMVAIVLFAFLL------SARTTL 368

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKL 750
            ++  + L +  T   F   G   N+  +  +   IG  V+D VV    +  R+++N + 
Sbjct: 369 ISLVAIPLSLAATALVFHWLGQSINVMTLGGLAIAIGELVDDAVVDVENILRRLKQN-RE 427

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVV 807
               +   +++ K+  E     VY +    +  +P+    G     F    I     I+ 
Sbjct: 428 QEHPMPTLEVVRKASVEVRSGIVYATAIVVLVFVPLFALPGVEGRLFSPLGIAYIISILA 487

Query: 808 AASSSIFIAAPILLFIYDWRAK 829
           +   S+ +   +  ++     +
Sbjct: 488 SMLVSMTVTPVLCSYLLPRMKR 509



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 82/218 (37%), Gaps = 7/218 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + ++   D   Q         + +      S     V ++        +P     + E
Sbjct: 792  SAIATVSETDGPNQIGRENGRRRIVVYANTDGSDMSRIVRDIRAAIDRTQLPTGNSISLE 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALF 714
                   +   +   + ++ S   + + ++ R++    AL  +  + L +  ++    L 
Sbjct: 852  GQFQAQEQAAQKIAWLSLM-SLALVFLVLYTRYRSTTLALIIMANIPLALVGSVIAMWLS 910

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  ++ ++   +TL G +V + ++       N+  +      + ++ +   E L   + 
Sbjct: 911  GITLSVASMVGFITLTGIAVRNGILKVSHYI-NLCKFEGEQFGQSMVVRGSLERLTPVLM 969

Query: 775  TSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVA 808
            T++ A  ++ P+ +     G  ++   A+ +  G+V +
Sbjct: 970  TALVAAFALTPLLLSADAAGKEILHPVAVVIFGGLVSS 1007


>gi|32141159|ref|NP_733561.1| integral membrane efflux protein [Streptomyces coelicolor A3(2)]
 gi|256788219|ref|ZP_05526650.1| integral membrane efflux protein [Streptomyces lividans TK24]
 gi|289772112|ref|ZP_06531490.1| integral membrane efflux protein [Streptomyces lividans TK24]
 gi|24419024|emb|CAD55296.1| putative integral membrane efflux protein [Streptomyces coelicolor
           A3(2)]
 gi|289702311|gb|EFD69740.1| integral membrane efflux protein [Streptomyces lividans TK24]
          Length = 1041

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 61/516 (11%), Positives = 151/516 (29%), Gaps = 36/516 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  ++  + L+      +PQ      P+        L            +  
Sbjct: 6   RFSLAQRALIGLVSIVALVFGA-IAIPQLKQQLLPTIELPMVSVLAP---------YQGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    ++    +        +  +    I  SF      + +   V   +  
Sbjct: 56  SPDVVEKQVVEPIEDSLEAVDGISGVTATASEGNAVIMASFDYGPDNQQLVADVQQAVNR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  D    ++  +T+   ++VL+  +           + ++ +  + ++   +   
Sbjct: 116 ARAQLPDDVDPQVISGSTDDIPTVVLAVTSDKDQQ----ALADQLDKTVVSELKDIDGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q +      +Q+    DP++L     +   ++        +     F             
Sbjct: 172 QVVVDGVRDVQVTVTPDPAKLAAAKVSPQALAQSLQAGGATVPAGSFDEA---------- 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G +             +    +   E             + +  A      
Sbjct: 222 ---------GANRTVQVGGGFTSVKQIQDLMVTGEGVDEPVRLGDVATVKEEEAKADSLT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     S              LR          V      A   + S 
Sbjct: 273 RTNGKPSLAVAVTMDHDGSAVSISNAVEDKLPDLREQLGSGATLTVVSDQGPAVSKAISG 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +     ++V+ + +   +  LV   SI L+V+L L +L     +L + ++  + 
Sbjct: 333 LTTEGGLGLLFAVLVILVFLASIRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALT 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD +I+V E I+      +    ++          +  S +T +   + +   G
Sbjct: 393 IAIGRVVDDSIVVLENIKRHLGYGEERKDAILNAVREVAGAVTSSTLTTVAVFLPIGLVG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G        F++T+  ++L S+  ++++V  +  + 
Sbjct: 453 GMVGELFGSFSLTVTAALLASLLVSLTVVPVLSYWF 488



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/186 (16%), Positives = 70/186 (37%), Gaps = 19/186 (10%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS---RELIRKGIVGVIISAIAMLIYIW 685
                V + +     ++   +T+      GP +S     L  +G +G++ + + +L+++ 
Sbjct: 294 SISNAVEDKLPDLREQLGSGATLTVVSDQGPAVSKAISGLTTEGGLGLLFAVLVILVFLA 353

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L    ++ L +   L       +  N+  + A+   IG  V+D +VV + ++
Sbjct: 354 ---SIRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
              +        +D I  ++ E  G    +++      LP+ + GG            G 
Sbjct: 411 ---RHLGYGEERKDAILNAVREVAGAVTSSTLTTVAVFLPIGLVGG----------MVGE 457

Query: 806 VVAASS 811
           +  + S
Sbjct: 458 LFGSFS 463



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 65/195 (33%), Gaps = 8/195 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                              V   ++ KI  +   +              +      + ++
Sbjct: 796 DGQRAATITAKPTGDNTGAVGADLQSKINGLDLPAGATAEIGGVTADQDDAFVNLGLAML 855

Query: 675 ISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +   F+     L  + ++    T  +G     G    + A+  +L LIG  
Sbjct: 856 AAIAIVFMLLVGTFRSLAQPLILLVSIPFAATGAIGLLIATGTPMGVPAMIGMLMLIGIV 915

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
           V + +V+ D + +  K         + + +     L   + T++A   ++LPMA+     
Sbjct: 916 VTNAIVLIDLINQYRKQ---GYGVVEAVVEGGRHRLRPILMTALATIFALLPMALGVTGE 972

Query: 790 GGSVIGSFAIPMAFG 804
           GG +    A+ +  G
Sbjct: 973 GGFIAQPLAVVVIGG 987


>gi|322434159|ref|YP_004216371.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
 gi|321161886|gb|ADW67591.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
          Length = 1060

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 72/575 (12%), Positives = 164/575 (28%), Gaps = 40/575 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +  +    +++   G+  A      Q  +  FP       + +G+D     + V+ V+
Sbjct: 20  RLSKPIYFFLAVLTIAGIYAAF-----QVPISVFPDTNFPRVV-IGVD-----NGVMPVE 68

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +       +    ++  + +        +  +   +I+L F  +             L  
Sbjct: 69  QMQVT---ITKPIEDAVNSVPGLTTVRSTTSRGSAEISLLFDWNVDMFRTLQLTDSALAK 125

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME---IIRQRIDQIGISE 178
           + S L     K      T     I+      D   +  + Q+            Q+    
Sbjct: 126 IQSSLPATA-KITTNRLTFATFPILGYALTADDRGADTVSQTALWGIATYNLKPQLNRVS 184

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                +     + +     DP++L+    T   +       N      ++          
Sbjct: 185 GVATVVVQGGKVPEFHIVPDPAKLQTAGVTLLDLVNAVQTSNIIDSPGLYEADHQL---- 240

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                          + G          +    +  +              +G     V 
Sbjct: 241 ---------------ILGLVGAQAHDVDQLGNLVVKNTAANVPVRINDVAMLGPATMPVF 285

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                          + +   +              L++   P                S
Sbjct: 286 TSVDANGKPAVLLNITRQPTSNTVAVATAVDAKVQALKSMLPPGVHMTPFYDQSELVRES 345

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +  +    I   L  ++LF+ +      L+A   I + V +T+  L ++G +  L ++ 
Sbjct: 346 IASVRDAILIGLVLACLILFLFLRDWTSSLIAGLVIPVTVAITILFLWIIGQSFNLMTLG 405

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+   IGL +D  I+V E I       Q+   ++ +        +  S +T ++  + L 
Sbjct: 406 GLAAAIGLVIDDAIVVVENIVVHRDAGQTRSDAVRLALREIIVPLVGSTVTPVVVFLPLI 465

Query: 479 FF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G   R  A+TM  S+L S+  A++   A+ + ++R         +  +   +  
Sbjct: 466 ATTGVTGSFFRALAVTMTASLLTSLMLALTFTPALSLSLLREAGSNKKHGHEENGPVMRR 525

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
                  + +   G   +I      +        N
Sbjct: 526 LLATHNRLLSWTIGRTWAIGAIALVLIGSSYFAFN 560



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 99/267 (37%), Gaps = 8/267 (2%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV- 629
           + +D  G + +   A          + L    +   +  + +G+   L+ +  QP  +  
Sbjct: 250 HDVDQLGNLVVKNTAANVPVRINDVAMLGPATMPVFTSVDANGKPAVLLNITRQPTSNTV 309

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRF 688
           A    ++   + +  ++P            ++ RE I      ++I  +   LI      
Sbjct: 310 AVATAVDAKVQALKSMLPPGVHMTPFYDQSELVRESIASVRDAILIGLVLACLILFLFLR 369

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  +L A   + + +  T+ F  + G  FNL  +  +   IG  ++D +VV + +   +
Sbjct: 370 DWTSSLIAGLVIPVTVAITILFLWIIGQSFNLMTLGGLAAAIGLVIDDAIVVVENI---V 426

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                  +  D +  ++ E +   V +++   +  LP+       GS   + A+ M   +
Sbjct: 427 VHRDAGQTRSDAVRLALREIIVPLVGSTVTPVVVFLPLIATTGVTGSFFRALAVTMTASL 486

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           + +   ++     + L +      N +
Sbjct: 487 LTSLMLALTFTPALSLSLLREAGSNKK 513



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/268 (10%), Positives = 84/268 (31%), Gaps = 7/268 (2%)

Query: 563  LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                              +                  +             E    V L 
Sbjct: 770  PYTVRVRMSDEHRASLSAIENTVFNSATGHTATLGALAQVTELPPQNEIRRENLEQVVLV 829

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                +       +  VK  + ++   ++++       +  ++        ++++   +  
Sbjct: 830  SGRLEGSNLGGAMTQVKAAVAKLSLPASVRVEYGGTYQEQQKSFHDLAQVLVLALALVFG 889

Query: 683  YIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
             +   F+ +   +  +T+ +L +   +         FN+ +   ++ +IG    + +++ 
Sbjct: 890  VLLAEFRNFSAPIAILTSSVLSMAGVVFALLTTNTNFNVASFMGLIMVIGIVAKNGILLL 949

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFA 798
            D    + +      +  D +  +    L   V T++AA   +LP+A     G  ++   A
Sbjct: 950  D---ADERARAEGANALDAMLHAAQRRLRPIVMTAVAAMCGMLPLAFAFGAGSQMLQPLA 1006

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I +  G++++   S+ +   I   +   
Sbjct: 1007 IAVIGGLIISVLLSLVVTPAIYYQLTMR 1034


>gi|257126595|ref|YP_003164709.1| protein-export membrane protein SecD [Leptotrichia buccalis
           C-1013-b]
 gi|257050534|gb|ACV39718.1| protein-export membrane protein SecD [Leptotrichia buccalis
           C-1013-b]
          Length = 404

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 130/382 (34%), Positives = 213/382 (55%), Gaps = 22/382 (5%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
            +      ++ +  + +   II +R++ IG++E  IQ  G+ +++++L G +DP +  +L
Sbjct: 38  SVVLQAQGKIEADTMSKVRNIIERRVNSIGVAEPVIQLSGNDKLIVELAGIKDPQKAIEL 97

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           +GTTAK+ F                   +D      L+E     S               
Sbjct: 98  IGTTAKLEFRIKN---------------KDGSYGPVLLEGSALKSAGVSRDQVGM----- 137

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
             P V    +  GA  F ++TR+NIGK LA++LD +  +AP IN  I  G   I+G F++
Sbjct: 138 --PSVSFELNSQGANTFAKITRENIGKQLAIMLDNKEQSAPTINSEINGGSGIITGRFSM 195

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E A  LA +L++G+LP+++ IVE R VGA LG DSI +   A +  L +I +FMI +Y  
Sbjct: 196 EEANNLANLLKSGALPVEIKIVENRTVGATLGVDSIKQTGIAGLIALGVISVFMIAIYKI 255

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            G+VAD ++ +N +L L LLS +GA LTLP IAG +L +G+AVDSN++  ERI+EE R  
Sbjct: 256 PGIVADIALLINGVLVLGLLSGIGAALTLPGIAGFILTLGMAVDSNVITYERIKEELRLG 315

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +S+  +++ G+  A+  I D NIT L+   VLFF G G ++GFA+T+ L ++ ++ T + 
Sbjct: 316 ESLHDAVERGYENAFPAIIDGNITTLLVAAVLFFLGTGPIKGFAVTLSLGVVATIITGVF 375

Query: 506 IVRAMMIFIIRYKKMKSIDINP 527
           + + ++   I+   +K   +  
Sbjct: 376 VSKVILKLFIKTFNIKREQLFW 397



 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 97/251 (38%), Gaps = 7/251 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +    ++ +     L   + S    + E N    +            +  ++K    
Sbjct: 151 TFAKITRENIGKQLAIMLDNKEQSAPTINSEINGGSGIITGRFSMEEANNLANLLKSGAL 210

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
            +           VG  +  + I++  +  +I+   + +++   +K    + A   L+++
Sbjct: 211 PVEIKIVENR--TVGATLGVDSIKQTGIAGLIALGVISVFMIAIYKIP-GIVADIALLIN 267

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               LG  +  G    L  +A  +  +G +V+  V+ Y+R+++ ++L     S  D +++
Sbjct: 268 GVLVLGLLSGIGAALTLPGIAGFILTLGMAVDSNVITYERIKEELRL---GESLHDAVER 324

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL-LF 822
                    +  ++   +    +   G   I  FA+ ++ G+V    + +F++  IL LF
Sbjct: 325 GYENAFPAIIDGNITTLLVAAVLFFLGTGPIKGFAVTLSLGVVATIITGVFVSKVILKLF 384

Query: 823 IYDWRAKNARI 833
           I  +  K  ++
Sbjct: 385 IKTFNIKREQL 395



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQNKITL 100
           N++ LGLDLRGG+ +VL+          +    + +   +   G+    ++    +K+ +
Sbjct: 25  NKVKLGLDLRGGTSVVLQAQGK-IEADTMSKVRNIIERRVNSIGVAEPVIQLSGNDKLIV 83

Query: 101 SFADSRFKENIADKVTLFLQGVNS 124
             A  +  +   + +    +    
Sbjct: 84  ELAGIKDPQKAIELIGTTAKLEFR 107


>gi|227538210|ref|ZP_03968259.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227241979|gb|EEI91994.1| AcrB/AcrD family multidrug resistance protein [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 1050

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 72/668 (10%), Positives = 166/668 (24%), Gaps = 45/668 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++  +     L+I     L    + RFP   P               +V+ +  
Sbjct: 8   RPVLATVVSIL-----LVILGLVGLKLLPVSRFPEIAPP-------------SVVVSLSY 49

Query: 63  DDFVNGFL-QMYSDELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
               +  + +     +   +        I   +       + + F      +  +  V  
Sbjct: 50  PGANSETVAKSVLLPIEEAINGVEDMTYIKSSASNSGSGSVQVFFKTGTNPDVASVNVQT 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID--QVISHAIEQSMEIIRQRIDQIG 175
            +    S +  +  +  +     +   I+      D    +              +  + 
Sbjct: 110 RISKAISSIPAEVNEAGITVMPRQSGVIMTINLYSDHQDSVYDETFLQAYAQINMMRPLL 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +   Q          +    +P +L         +       N       FG      
Sbjct: 170 RVDGVAQVSRVGARDYSMRLWLNPEKLALYTLVPQDVMDAIKDQNFEIAPGKFGETSD-- 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                                       +  +    +          +      I     
Sbjct: 228 --------------EAFETVIRHKGRLTQPEEFENIVIKTNKDGSVLYLKDVARIEFGAT 273

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
            +     +          +  +  + +            +           +        
Sbjct: 274 NLGSDNKVNGHPGLTLNLTQTSGSNAHDIDIAVRKTLEGMARSFPEGIKYEITYAVRDQI 333

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S S  K T      LV I++F+ +   +  L+   +I ++++ T   L L G +L + 
Sbjct: 334 DESISQVKHTLFEAFILVFIIVFIFLQDFRSTLIPAIAIPVSLVGTFFFLQLFGFSLNVL 393

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++  +VL IG+ VD  I+V E I ++          +     S     I    +      
Sbjct: 394 TMFALVLAIGIVVDDAIVVVEAIHQKMHATGLKAREATLSTMSEITGAILSITMVMAAVF 453

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + + F  G      R FA T+  +ILIS   A+++  A+   ++++  +++   +  S+F
Sbjct: 454 LPVGFMEGPAGIFYRQFAYTLATAILISALNALTLSPALCALLLKHSAVETGIKDGDSKF 513

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                     F  +        I      I           +    GI L V A +    
Sbjct: 514 TKYKKRFFHAFNTSFERLTDRYISGVKKLIKHKPLAWGGLILITAAGIFLMVRAPKSFIP 573

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +   S +                +               +          +      +  
Sbjct: 574 TEDDSFITYSLAMPPGASLTRTTEVLRQADSILKKREDIKGMTTVSGFNVLDGSSSPAFA 633

Query: 652 QNTEIVGP 659
                + P
Sbjct: 634 AGYINMLP 641



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 92/304 (30%), Gaps = 17/304 (5%)

Query: 537  CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               I+   AR      S       + +          +    I +       V +S + +
Sbjct: 753  MTTIRAYFARVQAGDFSRFGRQYRVYVQADMDYRKDPESFNSIFVRNKNGEMVPVSTILT 812

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              + +    I+  N                   A   + ++   K+           +  
Sbjct: 813  LEKVVGPETITRYNLYNAIAVNATPAKGYSTGDAMKAIQKLADDKLPVNYGFEWTGMSFE 872

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFAL 713
                 S+ +       +I +   + +Y  +      +      + ++ + +    G   +
Sbjct: 873  ESQSGSQTI-------LIFALSILFVYFLLAAQYESYILPWAVLLSVPVGLVGVYGTIMM 925

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+E N+     ++ LIG    + +++ +     ++     +S  +         L   +
Sbjct: 926  VGLENNIYVQVGLIMLIGLLAKNAILIIEFA---VQQRDRGLSIVEAALTGAQMRLRPIL 982

Query: 774  YTSMAAFISVLPM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK- 829
             TS+A    ++P+    G S I   S +   A G++      IFI   + +       K 
Sbjct: 983  MTSLAFIAGLVPLMWTVGPSAIGNHSISFSAAGGMLFGVLLGIFIIPVLFIVFKTLDEKV 1042

Query: 830  NARI 833
              ++
Sbjct: 1043 RNKL 1046



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/198 (16%), Positives = 82/198 (41%), Gaps = 12/198 (6%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           + LE + +   E +             +   ++        I+  I + I++     +  
Sbjct: 308 KTLEGMARSFPEGIKYEITYAVRDQIDESISQVKHTLFEAFILVFIIVFIFLQ---DFRS 364

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + +  T  F  LFG   N+  + A++  IG  V+D +VV + + + M  + 
Sbjct: 365 TLIPAIAIPVSLVGTFFFLQLFGFSLNVLTMFALVLAIGIVVDDAIVVVEAIHQKM--HA 422

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM---AVWGGSVI--GSFAIPMAFGIVV 807
           T +  R+    +++E  G  +  S+   ++ + +    + G + I    FA  +A  I++
Sbjct: 423 TGLKAREATLSTMSEITGAIL--SITMVMAAVFLPVGFMEGPAGIFYRQFAYTLATAILI 480

Query: 808 AASSSIFIAAPILLFIYD 825
           +A +++ ++  +   +  
Sbjct: 481 SALNALTLSPALCALLLK 498


>gi|322514234|ref|ZP_08067296.1| RND superfamily resistance-nodulation-cell division
           acriflavin/drug:proton (H+) antiporter [Actinobacillus
           ureae ATCC 25976]
 gi|322119927|gb|EFX91936.1| RND superfamily resistance-nodulation-cell division
           acriflavin/drug:proton (H+) antiporter [Actinobacillus
           ureae ATCC 25976]
          Length = 1038

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 60/565 (10%), Positives = 156/565 (27%), Gaps = 38/565 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL       + +  +  +P                  ++     
Sbjct: 9   KRPVLAVCISLLITILGL-----QSINKLQVREYPEMTISIVT---------VNVNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +E  +          S     +  T+    +   +     ++  +  
Sbjct: 55  DASLMQALVTSQIEEAVAQADNIDYVTSSSSPSTSTTTIKMKLNTNPQMALADISAKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L        +  ++    +++  +   D++     + +  I R    Q        
Sbjct: 115 IRANLPSGIDDPSISVSSGSNDALMYIRFVSDELNPS--QITDYINRVVKPQFFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP ++     + A +       N +         +    +  + 
Sbjct: 173 SVDIFGAATFGLRIWLDPEKMAGNNLSGAAVLSALRANNLNTAAGNANGYYTVYKNKVES 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  + ++                        R         +           
Sbjct: 233 STPSVEELENVTIST-------------------TSDGRIVKLKDIAKVELDKYQDASRV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V           S     +     +    +  ++           +      A   S + 
Sbjct: 274 VADGKEAVVLAVSAATTANSLTVAKDIYPVFELITKNLPSSMSGQILYDKTIAINSSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL+V+ + +   +  +V   +I +++I  L LL + G ++ L ++  +V
Sbjct: 334 VIKTIGEATVIVLVVIILFLGSLRAMIVPIITIPISLIGVLFLLQMFGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I+V E +    ++ +S F +  +G       +    IT       +    
Sbjct: 394 LAIGLVVDDAIVVLENVERHVKEGKSPFDAAIIGTREIAIPVISMTITLGAVYSPMALMD 453

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  ++ IS   A+++   M   +++                ++    
Sbjct: 454 GVTGSLFKEFALTLAGAVFISGIAALTLSPMMSSRVLKEHNEDHESRFSKCINAMLDKMT 513

Query: 539 AIQFMRARFWGVGISILFSICSICL 563
           +      R        +        
Sbjct: 514 SCYTNMLRGVMAMRWFVLIFALGIF 538



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/222 (14%), Positives = 81/222 (36%), Gaps = 14/222 (6%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +L       V  + + + V     E+              +  + +     + +  +   
Sbjct: 798  QLNSATISGVVSSSIGDAVNWAKDELDRSLPKGYQYDFKSEARQYVQEGNAMAMTFALAV 857

Query: 680  MLIYI--WIRFK-WYFALGAITTLILD------ITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++IY+   I+F+ W   +  + ++ L       +   LG   + G   N+ +   ++TL+
Sbjct: 858  IIIYLVLAIQFESWRDPMVILVSVPLALSGALLVLNLLGIAGVAGATLNIYSQVGLVTLV 917

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G      +++ +  ++        +S  D I  S    L   + T+ A    ++P+    
Sbjct: 918  GLITKHGILMCEVAKEE--QLNNGLSRFDAIVHSATIRLRPIMMTTAAMVAGLIPLLFAV 975

Query: 790  GGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAK 829
            G   I  F++ M    G+ +    ++F+   I  F+ +    
Sbjct: 976  GAGAIARFSMGMVIVAGLSIGTLFTLFVLPVIYTFLGESHKP 1017



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 73/187 (39%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           V E++ K +   +    + +  I       E+I+      +I  + +++++         
Sbjct: 303 VFELITKNLPSSMSGQILYDKTIAINSSINEVIKTIGEATVIVLVVIILFLG---SLRAM 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  I T+ + +   L    +FG   NL  + A++  IG  V+D +VV + +    +    
Sbjct: 360 IVPIITIPISLIGVLFLLQMFGFSINLLTLLALVLAIGLVVDDAIVVLENV---ERHVKE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             S  D       E     +  ++       PMA+  G        FA+ +A  + ++  
Sbjct: 417 GKSPFDAAIIGTREIAIPVISMTITLGAVYSPMALMDGVTGSLFKEFALTLAGAVFISGI 476

Query: 811 SSIFIAA 817
           +++ ++ 
Sbjct: 477 AALTLSP 483



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 70/533 (13%), Positives = 150/533 (28%), Gaps = 43/533 (8%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            M      +  + +I  +G+   LP  L     +  P+      + +G    G S+  L  
Sbjct: 519  MLRGVMAMRWFVLIFALGIFAVLPTLLTSLSSEVAPTEDRGFVVGIG---NGPSNTNL-- 573

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
            D              ++        +  F+       I +S  D   +E     ++  + 
Sbjct: 574  DYTQAATEKFNEEVGKIPEVASMMTVSGFNGANSALSI-ISLKDWNDRERERAPISADVS 632

Query: 121  G-VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                + + +D         +  E  +  S           +        ++    G    
Sbjct: 633  AIAKNVVGMDINAISFPEISTGENGLPFSLVITTADNYTKLADVATQFLKKAQASGQFFF 692

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            +   L    + ++     D  ++     T  ++                         G 
Sbjct: 693  SSLDLKFDTVTMKWKF--DREKMGTYGVTMQQV------------------------SGT 726

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                     I+ + ++        +  +       D +                   +  
Sbjct: 727  LGAYLSGAIITRVDIDSRAYPIVSQAIRKDRLNPQDLVNYYVTTASGESVPLSSFVTLEL 786

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                +A      + S       + +I  A   A      SLP       +      +   
Sbjct: 787  STEPSALPRMNQLNSATISGVVSSSIGDAVNWAKDELDRSLPKGYQYDFKSEARQYVQEG 846

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL------GATLT 413
            +    T A+   ++ +VL +     +  +V   S+ L +   L +L+LL      GATL 
Sbjct: 847  NAMAMTFALAVIIIYLVLAIQFESWRDPMVILVSVPLALSGALLVLNLLGIAGVAGATLN 906

Query: 414  LPSIAGIVLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            + S  G+V  +GL     IL+ E  +EE      S F ++    +     I  +    + 
Sbjct: 907  IYSQVGLVTLVGLITKHGILMCEVAKEEQLNNGLSRFDAIVHSATIRLRPIMMTTAAMVA 966

Query: 473  ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              + L F    G  A     + +   + I     + ++  +  F+    K   
Sbjct: 967  GLIPLLFAVGAGAIARFSMGMVIVAGLSIGTLFTLFVLPVIYTFLGESHKPLR 1019


>gi|114776636|ref|ZP_01451679.1| Heavy metal efflux pump CzcA [Mariprofundus ferrooxydans PV-1]
 gi|114552722|gb|EAU55153.1| Heavy metal efflux pump CzcA [Mariprofundus ferrooxydans PV-1]
          Length = 1049

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 69/589 (11%), Positives = 170/589 (28%), Gaps = 35/589 (5%)

Query: 18  GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED------DFVNGFLQ 71
           G +      +P+  LD FP                 +++ + ++ +      + V   + 
Sbjct: 30  GSMAYALFIVPKLNLDAFPDV---------------TNVQVTINTEAQGMASEEVEQLIT 74

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
              + +   L          +   + IT+ F +          V   LQ     +     
Sbjct: 75  YPIEAVMYALPDVEEVRSISKTGLSAITVVFKEGTDIYFARQLVFQKLQDARQNVPAWAG 134

Query: 132 KNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
              +   T+           +       A+             +   E     L     +
Sbjct: 135 TPKIGPNTSGLGQVFQYIIKSDPAAEFDALTLRALNDWVVKLMLMPVEGVTDILSYGGEV 194

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            Q   + +P +L         ++      N +  G+             Q ++     I 
Sbjct: 195 RQYQVQLNPEQLLSYKLHPNDVAKAIEANNRNAGGW------YLPQGDEQLVIRGVGWIP 248

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                       P      V +   ++ +  F    R           DG V +   +  
Sbjct: 249 SGEDGLKAIAAIPVKTVNGVSVRVRDVASVAFGGEIRQGAVTMTERADDGGVKSLGEVVV 308

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            I   +   +   TI+       +++                     +    +       
Sbjct: 309 GIVLKRFGANTKHTIDDVKARLKIVQKALPRGVTIQPFYDQSELINKAVWTVEKALLEAF 368

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            L++IVLF+ ++  +   +   S+ ++V+  LA++   G +  L S+ G+ + IG+ VD 
Sbjct: 369 VLIIIVLFLFLMNLRAATLVLLSVPISVLAALAVMQYYGISANLMSLGGLAIAIGMMVDG 428

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRA----YSTIFDSNITALIATVVLFF---FGGG 483
           ++++ E I +   K  +    + +  + A       +  + +  L+    LF      G 
Sbjct: 429 SVVMVENIFKHLEKTPAGDHGIALRITEAAKEVARPVLFAVLIILLVFTPLFSLEGVEGK 488

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
                A+++  ++  S+  A+ ++  +  ++     +                 +     
Sbjct: 489 MFTPMALSICFAMFASLLAAVFVMPVLATYVFTKGVVHRESPVLAPIARAYHWLLDKALN 548

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
             +    G ++ F +    + F          +G + + V       L 
Sbjct: 549 ARKTVVGGAALAFVLTLCIVPFLGTEFVPELEEGTLTIRVTLAPSSSLE 597



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/257 (13%), Positives = 87/257 (33%), Gaps = 13/257 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       ++      +          +   +    V +        A T+      K
Sbjct: 268 VSVRVRDVASVAFGGEIRQGAVTMTERADDGGVKSLGEVVVGIVLKRFGANTKHTIDDVK 327

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIV----GVIISAIAMLIYI-WIRFKWYFALG 695
              +IV  +  +   I       ELI K +      ++ + + ++I +         A  
Sbjct: 328 ARLKIVQKALPRGVTIQPFYDQSELINKAVWTVEKALLEAFVLIIIVLFLFLMNLRAATL 387

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR---KNMKLYT 752
            + ++ + +   L     +GI  NL ++  +   IG  V+  VV+ + +    +      
Sbjct: 388 VLLSVPISVLAALAVMQYYGISANLMSLGGLAIAIGMMVDGSVVMVENIFKHLEKTPAGD 447

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAA 809
             I+ R  I ++  E     ++  +   +   P+    G     F   A+ + F +  + 
Sbjct: 448 HGIALR--ITEAAKEVARPVLFAVLIILLVFTPLFSLEGVEGKMFTPMALSICFAMFASL 505

Query: 810 SSSIFIAAPILLFIYDW 826
            +++F+   +  +++  
Sbjct: 506 LAAVFVMPVLATYVFTK 522



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 77/219 (35%), Gaps = 10/219 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
             +   R+  Q          L     K  +         T + G +   +   +  + ++
Sbjct: 832  DDVQRRVVIQSNVEGRDMGSLVAELDKRIQNEIKLPPGYTVVFGGQFENQQRAQARLMIV 891

Query: 675  ISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
            +    ++I++ + F +       +  L + +    G  ALF  G   ++ +    + L G
Sbjct: 892  VPLSLLMIFLLLYFMFHSLGQATLIMLNVPMALIGGILALFISGQYLSVPSSIGFIALFG 951

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
             +V + VV+ D +      +       D +       L   + T+M A + ++P+ +   
Sbjct: 952  LAVLNGVVLVDAI----NRHLDEHDLNDAVRHGAESRLRPVLMTAMIAALGLIPLLLATG 1007

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             G  +    A  +  G+V +   ++F+   +       +
Sbjct: 1008 IGSEIQKPLATVVVGGLVSSTLLTLFVLPCLYERFSRRK 1046


>gi|302338273|ref|YP_003803479.1| acriflavin resistance protein [Spirochaeta smaragdinae DSM 11293]
 gi|301635458|gb|ADK80885.1| acriflavin resistance protein [Spirochaeta smaragdinae DSM 11293]
          Length = 994

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 84/668 (12%), Positives = 182/668 (27%), Gaps = 42/668 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD--EDDFVN 67
           L +++  + L++      P+   +  P+ +                +V E +    + + 
Sbjct: 13  LSTLMLYLALILFGVVSFPRLKGEYLPTILFPE-----------VRVVCEFENISAEEIE 61

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             + +  + + S +          RQ  + I L F+        A +V   +      L 
Sbjct: 62  RQVTVPLENVLSGVSGVKELESLSRQGISSILLRFSWGTDSYKAALEVREKIDSAYPYLP 121

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              +K L+ T   +  ++ +      +      E    I      ++   E         
Sbjct: 122 HGIEKPLVFTERGENEALFILVLRPKEGT-SIQELDRTIRYDLKTRLMQVEGIGTVRLRG 180

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
               ++    DP           ++                                   
Sbjct: 181 ITSPEVKVLLDPDTCTAAGLALNEVPSLLASSVFELPIGKVN------------------ 222

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
              G   +   A+ D      +  I+                +    A            
Sbjct: 223 --EGGKEHLIKASTDTVDLSALQRIAVPVESGSFLSLGEIAEVRLGHAERTSFFSYNGEP 280

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
              A      +        T       +R         I  E        +      +  
Sbjct: 281 CVGAFLWPSPEEGTLNASRTLRRELTDIRRNYANDIEIIFLEDGAERIRSAFRELAISLI 340

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           + +    +V+ + +      ++   S+   +I       L G +L + S+ GI +GIG+ 
Sbjct: 341 LGSAAAFLVMVIFLRSLSSAVILLSSLPAAIIPIFFFQYLFGLSLNVMSLTGIAIGIGMI 400

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA--- 484
           VD++I+V ERI+      +    ++  G     S+ F S +T L+  + + F  G     
Sbjct: 401 VDNSIVVLERIQ-----GRRDHAAIAEGVLEMGSSTFGSTMTTLLVFLPIVFVPGIIGIL 455

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
            R  AIT+ L ++ S   ++S+  A+ + I    K  S          +    +     R
Sbjct: 456 FRELAITISLLLIFSFLVSMSLTPALYVLISPKTKESSSKKIFDRAESVYGKLLHALIAR 515

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                + I I F+                  +G +QL +          V +  E     
Sbjct: 516 PFMIILLIIISFAALFGLAKVLPKETMPSVPEGRLQLSLSLPADTPFDGVEAAAERFLQA 575

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
               +   G   +       P +   +   L  +             +       +    
Sbjct: 576 VGEAEGISGGYAYTGYEADNPLERAKKESSLNDIFFTFFYAPQTYQREAILKAHIEREAA 635

Query: 665 LIRKGIVG 672
           ++  G + 
Sbjct: 636 ILSVGKLS 643



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 82/252 (32%), Gaps = 12/252 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V +   + L  +             F                   ++  +R L     
Sbjct: 247 VPVESGSFLSLGEIAEVRLGHAERTSFFSYNGEPCVGAFLWPSPEEGTLNASRTLRRELT 306

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            I               G +  R   R+  + +I+ + A  + + I  +   +   + + 
Sbjct: 307 DIRRNYANDIEIIFLEDGAERIRSAFRELAISLILGSAAAFLVMVIFLRSLSSAVILLSS 366

Query: 701 ILDITKTLGFF-ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +      + FF  LFG+  N+ ++  +   IG  V++ +VV +R+               
Sbjct: 367 LPAAIIPIFFFQYLFGLSLNVMSLTGIAIGIGMIVDNSIVVLERI--------QGRRDHA 418

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIA 816
            I + + E    +  ++M   +  LP+    G +       AI ++  ++ +   S+ + 
Sbjct: 419 AIAEGVLEMGSSTFGSTMTTLLVFLPIVFVPGIIGILFRELAITISLLLIFSFLVSMSLT 478

Query: 817 APILLFIYDWRA 828
             + + I     
Sbjct: 479 PALYVLISPKTK 490



 Score = 45.5 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 58/155 (37%), Gaps = 22/155 (14%)

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I+ + M +++  +F+ +   L  +  L L    +  F  + G   N+ +   +L L G 
Sbjct: 844 AIALVLMYLFLGAQFESFSAPLLLMIVLPLSACGSFLFLTVTGRSLNINSGIGILILFGT 903

Query: 733 SVNDKV-----VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
           ++N  +      ++ R R+ +                    L     T+     ++LP+ 
Sbjct: 904 AINTTIILKASFLHSRNREELIRMAGGR-------------LRPVFLTTATTVTALLPLM 950

Query: 788 VWGGS--VIGSF-AIPMAFGIVVAASSSIFIAAPI 819
           + G     + +  A  +  G+++    S+ I   +
Sbjct: 951 LNGSPEATLQAHTATSVIGGLLIGTVLSLLIFPAL 985


>gi|238024075|ref|YP_002908307.1| putative RND efflux transporter [Burkholderia glumae BGR1]
 gi|55509028|gb|AAV52813.1| probable RND efflux transporter [Burkholderia glumae BGR1]
 gi|237878740|gb|ACR31072.1| Probable RND efflux transporter [Burkholderia glumae BGR1]
          Length = 1030

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 67/516 (12%), Positives = 154/516 (29%), Gaps = 37/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I  +GL   +        + ++P+ +    IS+  D  G S  +++  
Sbjct: 16  RRPVLALVVSMLILLVGLRALM-----SLPIRQYPT-LESATISVETDYPGASQALMQ-- 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 GF+     +  +          S  Q ++ I      +        ++   +Q 
Sbjct: 68  ------GFVTTPIAQSIATADGIDYLSSSTTQGKSVIKARLRLNADSNLAMTEIMAKVQE 121

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL  D   +++   T+   +++      D +     E +  I+R     +       
Sbjct: 122 VKYKLPADAYDSIITKLTDAPTAVMYLGFASDTL--SIPEITDYIVRVAQPLVTTVPGVA 179

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D  RL     +   ++      N                     
Sbjct: 180 SADILSGQNLAMRVWLDADRLAAHGLSAGDVAAALKANNVQAAPGQIKGSLTLADISADT 239

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++D                        + +   + G           +           
Sbjct: 240 DLQDARAFGN------------------LVVRAADNGYSLVRLRDVATVEIGGQNYDSSA 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +     L   +                      S   
Sbjct: 282 LMNGRRAVYIAVNATPSGNPLEIVRGIDALLPAMERNKPAGLTIADGFDVARFIHASIDE 341

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T A    +V++V+F+ +   +  L+   +I L+++ T  L+ L G +L + ++  +V
Sbjct: 342 VRATLAETVLIVVVVIFLFLGSFRAVLIPILTIPLSLVGTALLMLLFGFSLNILTLLAMV 401

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +  +G       +     T +     +   G
Sbjct: 402 LAIGLVVDDAIVVVENIHRHIEAGEPPVRAALIGTREIVMPVIVMTGTLVAVYAPIGLMG 461

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   + FA T+  S+ +S   A+++   +   +
Sbjct: 462 GLTGSLFKEFAFTLAGSVFVSGVIALTLSPMLGSLL 497



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   L  I T+ L +  T     LFG   N+  + A++  IG  V+D +VV + +    
Sbjct: 363 SFRAVLIPILTIPLSLVGTALLMLLFGFSLNILTLLAMVLAIGLVVDDAIVVVENIH--- 419

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +                 E +   +  +        P+ + G   GS+   FA  +A  +
Sbjct: 420 RHIEAGEPPVRAALIGTREIVMPVIVMTGTLVAVYAPIGLMGGLTGSLFKEFAFTLAGSV 479

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833
            V+   ++ ++  +   +   +    RI
Sbjct: 480 FVSGVIALTLSPMLGSLLLTAQLSEGRI 507



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 71/216 (32%), Gaps = 10/216 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V L   P   V   + ++ +  +                  +    L        
Sbjct: 803  NQMNAVTLSAVPAAGVTMGQAVDFLAAQSLPHGYSIDWLGESRQYVQEGNRLTVT----F 858

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + I + + +  +F+     L  + ++ L +   L    L     N+     ++TLIG 
Sbjct: 859  VFALIVIFLVLAAQFESLRDPLVILVSVPLSVCGALVPLYLGYATLNIYTQIGLVTLIGL 918

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++      N       +     I+++    L   + T+ A    ++P+    G 
Sbjct: 919  ITKHGILMVS--FANDLQRDEGLDRLAAIERAAAVRLRPILMTTAAMVAGLVPLVFASGA 976

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYD 825
                 FAI +    G++V    ++F+   +  F+  
Sbjct: 977  GAASRFAIGITVSTGMLVGTLFTLFVLPTVYTFLAR 1012


>gi|78485770|ref|YP_391695.1| heavy metal efflux pump CzcA [Thiomicrospira crunogena XCL-2]
 gi|78364056|gb|ABB42021.1| Resistance-Nodulation-Cell Division (RND) superfamily cation efflux
           transporter [Thiomicrospira crunogena XCL-2]
          Length = 1065

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 89/701 (12%), Positives = 197/701 (28%), Gaps = 64/701 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N  LVIL  +   +     +P    +  LD FP                 +++ + V+ 
Sbjct: 11  TNRLLVILALITLTVSAFFVIP----KLNLDAFPDV---------------TNVQVSVNT 51

Query: 63  D------DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +      + V   +    + +   L          +   + +T+ F +          V 
Sbjct: 52  EAPGLAAEEVEQLITYPIEAVMYALPDVEEVRSISKTGLSGVTVVFKEGMDIYFARQLVF 111

Query: 117 LFLQGVNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             LQ     +        +   T+                   A+E            + 
Sbjct: 112 ERLQSAKELIPDGVGTPEMGPNTSGLGQVYQYLLMAEPDSGFDAMELRSLNDWVVKLLLL 171

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            +E     L     + Q     +PSRL     T   +       N +  G+         
Sbjct: 172 PAEGVTDVLSFGGEVRQYQVNLNPSRLLAYGLTQDSVMKTLEQNNTNVGGWYMS------ 225

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
               Q ++          L        P        ++  ++         R        
Sbjct: 226 RGQEQLVIRGTGWFDHGELGLKQIRQVPLKTVDGTTVTVSDVAEVVLGREIRQGAVTMTR 285

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              DG+V     +   I   +   +   TI+        +           V        
Sbjct: 286 KNEDGKVENLGEVVSGIVLKRMGANTKVTIDAVNERFERINQALPEGVRFEVFYDQANLI 345

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         +    ++++L + ++      +   SI +++ + L ++S  G +  L 
Sbjct: 346 TAAVETVVNALLLAFVFIVVILALFLMNLSATFLVLISIPISIGIALMVMSWFGLSANLM 405

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS------------------------ 451
           S+ GI + IG+ VD ++++ E + +   +  +   +                        
Sbjct: 406 SLGGIAVAIGMLVDGSVVMVENMFKHLSRPDAEHDAERALRVGSTDRDPVRACGDHHGIA 465

Query: 452 --LDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISI 506
             L          IF +    L+  + LF F G      +  AI++ L++L ++  A+ I
Sbjct: 466 LRLQEAGKEVARPIFFATAIILVVFMPLFSFEGVEAKLFQPMAISIMLAMLSAVLVALII 525

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           V A+  ++ R    +          F+    +      ++        +    ++ +   
Sbjct: 526 VPALATYLFRKGVRQRESFLLKPIDFVYRKSLTWAMRHSKVVVGIAVFMVISAALVIPRL 585

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                    +G I L V        S + + L+     +     F      L R+     
Sbjct: 586 GTEFVPELEEGTINLRVTL---APSSSLETALQVAPKLEAMLMEFPEVTYALSRIGRAEI 642

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
               +      +   +  I    T +N   +   + ++L R
Sbjct: 643 GGDPEPVNNIEIYIGLKPIKEWQTAKNRYELQALMEQKLER 683



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 90/254 (35%), Gaps = 9/254 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +    P    V   ++  + I     Q    +    V +Q         + V ++ +  
Sbjct: 814  DLRLQAPTGAWVRLEDVADVNIASGPPQVRRDDVQRRVVIQANVQGRDMGSVVSDIRQAV 873

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              ++   +          +  +   ++  + V +S   + + ++  F        +  + 
Sbjct: 874  AEQVELPAGYSVDIGGQFESQQRAQKRLSLVVPVSLGLIALLLYFAFA-SVGQAMLILVN 932

Query: 702  LDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + +    G FAL   G   ++      +TL G +V + VV+ + +    +     +S  D
Sbjct: 933  VPLAVIGGVFALWFSGQYLSVPGSVGFITLFGVAVLNGVVMVESIN---QRIIDGLSVSD 989

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +       L   + T++ + + ++PM +    G  +    A  +  G++ A   ++F+ 
Sbjct: 990  AVFDGATSRLRPVLMTAITSALGLMPMLLSSGVGAEIQKPLATVIVGGLITATFLTLFVL 1049

Query: 817  APILLFIYDWRAKN 830
              +  +    + K+
Sbjct: 1050 PVLFAWFSKGKIKD 1063



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/320 (8%), Positives = 97/320 (30%), Gaps = 27/320 (8%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +  +  F    + L     +         + +  +A   +   + +  +
Sbjct: 222 WYMSRGQEQLVIRGTGWFDHGELGLKQIRQVPLKTVDGTTVTVSDVAEVVLGREIRQGAV 281

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
              +  +       GE    + L+    ++      +    ++I + +P           
Sbjct: 282 TMTRKNEDGKVENLGEVVSGIVLKRMGANTKVTIDAVNERFERINQALPEGVRFEVFYDQ 341

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE 717
             +    +   +  ++++ + +++ + +           + ++ + I   L   + FG+ 
Sbjct: 342 ANLITAAVETVVNALLLAFVFIVVILALFLMNLSATFLVLISIPISIGIALMVMSWFGLS 401

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID--------------- 762
            NL ++  +   IG  V+  VV+ + M K++            +                
Sbjct: 402 ANLMSLGGIAVAIGMLVDGSVVMVENMFKHLSRPDAEHDAERALRVGSTDRDPVRACGDH 461

Query: 763 --------KSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASS 811
                   ++  E      + +    +  +P+  + G    +    AI +   ++ A   
Sbjct: 462 HGIALRLQEAGKEVARPIFFATAIILVVFMPLFSFEGVEAKLFQPMAISIMLAMLSAVLV 521

Query: 812 SIFIAAPILLFIYDWRAKNA 831
           ++ I   +  +++    +  
Sbjct: 522 ALIIVPALATYLFRKGVRQR 541


>gi|302518605|ref|ZP_07270947.1| integral membrane efflux protein [Streptomyces sp. SPB78]
 gi|302427500|gb|EFK99315.1| integral membrane efflux protein [Streptomyces sp. SPB78]
          Length = 1046

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 63/518 (12%), Positives = 154/518 (29%), Gaps = 32/518 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R +     L  ++  + ++      +PQ      P+                  ++   +
Sbjct: 6   RFSLAQRALIGLMSIVAIVFGA-IAIPQLKQQLLPNIELPM-----------VSVIAPYQ 53

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D V   +    ++    +        +  +    +   F      + +   V   +
Sbjct: 54  GASPDVVEKQVVEPLEKSLDAVDGLSTTTSTASEGNAVVMAQFDFGSGTKQLVADVQQAV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               S+L  D    ++  +T+   ++VL+  +           S ++ R  + ++   + 
Sbjct: 114 NRARSQLPDDVDPQVVAGSTDDIPTVVLAATS----PRDQQALSDQLDRTVVPELKEIDG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q        +Q+    D ++L     + A +         +     F           
Sbjct: 170 VSQVTIDGVRDLQVTITPDTAKLASAGLSAAALGDALKTGGVTMPAGSFDEG-------- 221

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
               E++    G          D +               +        ++ +  A    
Sbjct: 222 ---GENRTVQVGTPFTSLRQIEDLRVVGQAGQGGAQGETPKPVRLGDVASVQQQEATATS 278

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                         +     S              LR          V          + 
Sbjct: 279 ITRTDGKPSLAVAVTMDKDGSAVGISNAVKDKLGDLRDSLGKGADLKVVVDQGPPVSKAI 338

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S      A+  G  ++V+ + +   +  LV   SI L+V+LTL +L     +L + ++  
Sbjct: 339 SGLTTEGALGLGFAVVVILVFLASIRSTLVTAVSIPLSVLLTLIVLWTRDLSLNMLTLGA 398

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + + IG  VD +I+V E I+      +    ++          +  S +T +   + +  
Sbjct: 399 LTIAIGRVVDDSIVVLENIKRHLGYGEERKEAILTAVKEVAGAVTASTLTTVAVFLPIGL 458

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G   G     F++T+  ++L S+  ++++V  +  + 
Sbjct: 459 VGGIVGELFSSFSLTVTTALLASLLVSLTVVPVLSYWF 496



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 71/177 (40%), Gaps = 9/177 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    L  ++  + +   L  + +      K    L  +G +G+  + + +L+++   
Sbjct: 304 SNAVKDKLGDLRDSLGKGADLKVVVDQGPPVSKAISGLTTEGALGLGFAVVVILVFLA-- 361

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    ++ L +  TL       +  N+  + A+   IG  V+D +VV + ++  
Sbjct: 362 -SIRSTLVTAVSIPLSVLLTLIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK-- 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
            +        ++ I  ++ E  G    +++      LP+ + G   G +  SF++ +
Sbjct: 419 -RHLGYGEERKEAILTAVKEVAGAVTASTLTTVAVFLPIGLVGGIVGELFSSFSLTV 474



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 69/191 (36%), Gaps = 3/191 (1%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L ++++ D        +      +  +P      +   E+ KK     +P         
Sbjct: 788 DLATVRLVDGPVSMTRIDGARAATVTAKPVGDDTGSISTELTKKLDELKLPQGATTEIGG 847

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
           V    +  L +  +  +   AI  L+ +         L  + ++    T  LG   + G 
Sbjct: 848 VTADQNDSLGKLALAMLAAVAIVFLLLVGTFRSLIQPLILLVSIPFAATGALGLLLVTGT 907

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              + A+  +L LIG  V + +V+ D + +            + + +     L   + T+
Sbjct: 908 PLGVPAMIGMLMLIGIVVTNAIVLIDLINQYR---DRGYGVIEAVTEGGRHRLRPILMTA 964

Query: 777 MAAFISVLPMA 787
           +A   +++PMA
Sbjct: 965 LATIFALIPMA 975


>gi|163849847|ref|YP_001637890.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
 gi|163661452|gb|ABY28819.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
          Length = 1031

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 72/526 (13%), Positives = 163/526 (30%), Gaps = 25/526 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
             +         +   +  + ++  + ++       ++ +  +  T+ F      +   +
Sbjct: 49  VTITQGGAAPSELQTQVTKWVEDSIAGVRGVKHITSAITEGASVTTVEFRLEVNTDRAVN 108

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  +   L     + ++       + I++       +     + S  +  +    
Sbjct: 109 DVKDAISKIRINLPRTIDEPVIQRVEITGLPILIYGVTSPAMTPA--DLSWFVEDKVART 166

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +          +  ++     P RL  L  T A ++    + +    G    V   
Sbjct: 167 LQGVKGVGGVERVGGVAREIRITPLPDRLLALGITAADVNKQVRVTSADLAGGRGEVGGR 226

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S           ++    +                       G R+        +   
Sbjct: 227 EQSIRTLAASRTIRDLKATSIVLP--------------------GGRKVRLDDLATVEDS 266

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +             +     S  +  S            A    G   I+     + +V 
Sbjct: 267 IEEPRTFARFNGESVVAFSVSRGSGASDAEVAAGVEKKIAEFAQGYPDIQF-QEIDSSVA 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A  GS +    T    A L +IV+F+ +   +  L+A  ++ L+V+ T   +  LG TL 
Sbjct: 326 ATRGSYASAMHTLMEGAALAVIVVFLFLRDWRATLIAAVALPLSVLPTFWAMDALGFTLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  I L  G+ VD  I+  E +    R  +S + +   G       +     T +  
Sbjct: 386 GISLLAITLVTGILVDDAIVEIENVVRHMRMGKSPYRASIEGADEIGLAVIAITATLIAV 445

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              + F GG A R F I  GL+I +S+F ++ + R +   +  Y  ++           +
Sbjct: 446 FAPVSFMGGIAGRYF-IQFGLTIAVSVFMSLLVARLITPLLAAY-FLRDHGHAEEREGPV 503

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           +     +     R   + + +  ++ +  ++ T  L  G   K   
Sbjct: 504 MRAYTRLVGWSVRHKWITLMVGLALFAGSIVSTKLLPSGFIPKQDN 549



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 74/249 (29%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +   R V L  + +  +S++      +            +            +E   
Sbjct: 246 SIVLPGGRKVRLDDLATVEDSIEEPRTFARFNGESVVAFSVSRGSGASDAEVAAGVEKKI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +  +  P    Q  +                 +  +A+A+++       W   L A   
Sbjct: 306 AEFAQGYPDIQFQEIDSSVAATRGSYASAMHTLMEGAALAVIVVFLFLRDWRATLIAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T       G   N  ++ A+  + G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSVLPTFWAMDALGFTLNGISLLAITLVTGILVDDAIVEIENV---VRHMRMGKSPYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIA 816
              +  +E     +  +        P++  GG        F + +A  + ++   +  I 
Sbjct: 423 ASIEGADEIGLAVIAITATLIAVFAPVSFMGGIAGRYFIQFGLTIAVSVFMSLLVARLIT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PLLAAYFLR 491



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 80/215 (37%), Gaps = 7/215 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V ++     S A   ++E      T       +   +    +I +E+    ++ +
Sbjct: 789  DRAVRVAVEANMEGSDALGSLIEQALATPTAKSLPPGVTIRQTGDAEIMQEVFSGFLMAM 848

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L I   +    +  +  ++  V  +L L+G 
Sbjct: 849  GAGIMMVYAVLVLLFGSFLQPLTILFSLPLSIGGAILGLLICHMPISMPVVIGLLMLMGL 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAVEEMA---RGVDRVTAIVDAGRKRARPIVMTTIAMAAGMVPSAMALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            GG      A+ +  G++V+   S+     + L + 
Sbjct: 966  GGEFRAPMAVAVIAGLIVSTLLSLVFVPAVFLLMD 1000


>gi|302344411|ref|YP_003808940.1| acriflavin resistance protein [Desulfarculus baarsii DSM 2075]
 gi|301641024|gb|ADK86346.1| acriflavin resistance protein [Desulfarculus baarsii DSM 2075]
          Length = 1044

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 62/515 (12%), Positives = 143/515 (27%), Gaps = 38/515 (7%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             ++    + I           +  P       I              E    + +   +
Sbjct: 13  AVLVLLAMIFITGLYAYDVLPREASPDVKIPYVI---------VTTTFEGVAPEDMEKLV 63

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD- 129
            +  +     +        +  +  + I + F      E+   +V   +      L  D 
Sbjct: 64  TIPIERKLKGINGIEEVRSTSAEGISNIVIKFTPKVSSEDAVQRVRDKVDQAKQDLPKDL 123

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
           P   ++   +  +  I+    +    +      + E      D+I      +       +
Sbjct: 124 PDDPVIDEVSSSDWPILQVVLSGPLSLKRLQVFAEE----FEDRIEAIPGVLDAKIVGGL 179

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             ++    D  R+R      + M    V                         +      
Sbjct: 180 EREIHVLFDLDRVRAYNVPFSSMIESVV--------------------QGNVNMPGGTMD 219

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
            G          D +    +  I       +  +      I            +      
Sbjct: 220 IGDGKYMVRVPEDFQHPSDIFSIVAFVRDGKPVYLRDVATIVDHQKDATTRSRIDGRQSV 279

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
               + ++  +     +    L   +R    P     +            +  +      
Sbjct: 280 TIEVTKRSGENLLRINDQIRALTQQMRHELPPSLEISLTADASHDVRNMVAELQNNILSG 339

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LVL+V+F+ +       +A  SI L++++T ALL  L  TL +  +  ++L +G+ VD
Sbjct: 340 LVLVLVVVFVFIGGRSAVFIAA-SIPLSMLITFALLWALDITLNMVVLFSLILALGMLVD 398

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           + I++ E I    ++ +S   +           +  S +T + A   + F+         
Sbjct: 399 NAIVIVENIYRHMQEGKSRLQAAIDATDEVAWPVTTSTLTTVGAFFPMLFWPDVMGEFMG 458

Query: 490 I---TMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
               T+ L++  S+F A+ I   +       K + 
Sbjct: 459 YLPKTLILALSASLFVALVINPVLSARYQTVKHLP 493



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 52/126 (41%), Gaps = 4/126 (3%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             A+    ++ L +  T        I  N+  + +++  +G  V++ +V+ + +    + 
Sbjct: 354 RSAVFIAASIPLSMLITFALLWALDITLNMVVLFSLILALGMLVDNAIVIVENI---YRH 410

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                S       + +E       +++    +  PM  W   V+G F   +   +++A S
Sbjct: 411 MQEGKSRLQAAIDATDEVAWPVTTSTLTTVGAFFPMLFWP-DVMGEFMGYLPKTLILALS 469

Query: 811 SSIFIA 816
           +S+F+A
Sbjct: 470 ASLFVA 475



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 80/237 (33%), Gaps = 29/237 (12%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V       D      ++  ++ ++ ++      +       +   +         +
Sbjct: 800  DQRRVVTVSANNDGRLANDIIAEIRPRLAQVNWPRGYEYAFTGEQREQEKSSSFLGNAFL 859

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT------ 728
             + + +   +  +F    A+  +  L   +   +G F  FG+    TA   ++T      
Sbjct: 860  AALLIIFFVLVTQFN--SAVTPLIILTSVVLSLMGVF--FGLLVTGTAFGVIMTGVGVIS 915

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L G  VN+ +V+ D      +L    +  R  + ++        + T++   + +LPMA 
Sbjct: 916  LAGVVVNNAIVLID---YYNQLRQGGLDIRQALIQTGLVRFRPVMLTAITTILGLLPMAT 972

Query: 789  ------------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                         GG         A+ + FG+ +A   ++ +  P+L  + D     
Sbjct: 973  GVSFDFVNMRPDIGGESSQWWGPMAVAVVFGLAMATMLTLVVV-PVLCSLADGAKLR 1028


>gi|296448127|ref|ZP_06890027.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
 gi|296254350|gb|EFH01477.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
          Length = 1086

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 68/563 (12%), Positives = 151/563 (26%), Gaps = 37/563 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
             +  +   P                     L     + V   +    +     +     
Sbjct: 29  FMRLPVAPLPQIDSPTV---------AVSASLPGASPETVATSVAGPLERRLGAIADVAE 79

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S    Q  I L F   R  +     V   +    + L      N          + V
Sbjct: 80  MTSSSSAGQTNIVLQFGLDRDIDGAVRDVQAAINAAAADLPSGLSSNPTYHKFNPADTPV 139

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           L    +   +    +           ++       Q   S      +  E  P+ L +  
Sbjct: 140 LI-LALTSNLLTRAQLFEAASNVLQQRLSQLPGVGQVSVSGGAAPAVRVELIPAALFKYG 198

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
                +       N +                            G       AN      
Sbjct: 199 VGLEDVRAALASANANSPKGDLS--------------------RGEDKWQIYANDQASRA 238

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
               ++                 +   +A + +  ++          S +   +   T++
Sbjct: 239 ADYRNLVVAYRNGNSVRLSDLGEVVDSVADLRNAALVQGKPAILVTISRQPGANIIETVD 298

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L AG       I+          S    + T  I   LV++V+F+ +   + 
Sbjct: 299 RIKAELPKLAAGLPSDVEIILASDRSTTIRASLHDTELTLVIAIALVILVVFLFIGEWRA 358

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
             V   ++ +++I     +  LG +L + S+  + +  G  VD  I+V E I        
Sbjct: 359 AFVPAIAVPVSIIGAFTGMYFLGYSLDILSLMALTIATGFVVDDAIVVLETIERHIEAGT 418

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTA 503
               +   G      T+   +++ +   + L   GG      R FA+T+ ++IL+S+  +
Sbjct: 419 PRREAALKGAREVGFTVLSISLSLIAVFIPLLLMGGMLGRMFREFAVTLSITILVSLVVS 478

Query: 504 ISIVRAM----MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
           ++    +    +    R ++  +   + L+  +      A+         +  SI  +I 
Sbjct: 479 LTTTPMLCSIVLRAKRRRERRWTRPFSKLATAYERSLIWALYHRGLIMAALVGSIALTIG 538

Query: 560 SICLLFTHGLNYGIDFKGGIQLG 582
              ++           +    + 
Sbjct: 539 LFAVIPKGFFPEQDTGRLRGSIQ 561



 Score = 75.9 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 82/244 (33%), Gaps = 7/244 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V LS +   ++S+     +          +   +    + +     ++   
Sbjct: 245 VVAYRNGNSVRLSDLGEVVDSVADLRNAALVQGKPAILVTISRQPGANIIETVDRIKAEL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAIT 698
            K+   +P               R  +    + ++I+   +++ +     +W  A     
Sbjct: 305 PKLAAGLPSDVEIILASDRSTTIRASLHDTELTLVIAIALVILVVFLFIGEWRAAFVPAI 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            + + I          G   ++ ++ A+    G+ V+D +VV + +    +        R
Sbjct: 365 AVPVSIIGAFTGMYFLGYSLDILSLMALTIATGFVVDDAIVVLETI---ERHIEAGTPRR 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S++     +P+ + GG    +   FA+ ++  I+V+   S+  
Sbjct: 422 EAALKGAREVGFTVLSISLSLIAVFIPLLLMGGMLGRMFREFAVTLSITILVSLVVSLTT 481

Query: 816 AAPI 819
              +
Sbjct: 482 TPML 485


>gi|295675176|ref|YP_003603700.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
 gi|295435019|gb|ADG14189.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
          Length = 1060

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 65/555 (11%), Positives = 149/555 (26%), Gaps = 29/555 (5%)

Query: 81  LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           +        +       I + F      +    +VT   Q     L        ++    
Sbjct: 75  VNDIEHTESTSLNGITVIKIFFQPGANIDEALAQVTALSQSQVRSLPPGITPPFILRYNA 134

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
             + I+    +   +     E           Q+         L       Q+  + D  
Sbjct: 135 STVPILRLALSSASLTEQ--ELFDFGNNFLKTQLATVPGASAPLPYGGKQRQIMIDIDSR 192

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           +L++   +   +       N         +     S       +    +           
Sbjct: 193 KLQERNLSPMDVVSAVSAQNLILPSGTAKIGSTEYSVVMNGSPDSLAGL----------- 241

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
                     +I          +     ++        +   +          +     S
Sbjct: 242 ---------NNIPIRTTANGTIYIRDVAHVRDGYQPQTNIVRVNGQRAALLTINKSGNTS 292

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
               ++    +   LR    P                S         I A L  +++ + 
Sbjct: 293 TLDIVDRIKTMMPTLRNLVPPSLNIDPVADQSLFVRASVEGVLREALIAACLTGLMILLF 352

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           +   +  L+   SI L++I ++  LS LG T+ + ++ G+ L +G+ VD   +  E I  
Sbjct: 353 LGNWRATLIIAVSIPLSMITSIIALSALGQTINIMTLGGLALAVGILVDDATVAIENISH 412

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR---GFAITMGLSIL 497
           +  + +++  ++  G  +       S ++  I  V +F   G A       A  +  ++L
Sbjct: 413 QLEQGKTLEQAILDGAHQIAIPTLVSTLSICIVFVPMFLLTGVAHYLFIPLAEAVVFAML 472

Query: 498 ISMFTAISIVRAMMIFIIRYKKMK----SIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
            S F + ++V  +  +++RY               + F  +       F R R       
Sbjct: 473 ASYFFSRTLVPTLAKYLLRYHHKPADLHHAPAQTRNPFMRVHYAFERGFSRLRERYRVFL 532

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                     +    +  G        +G      VD   +  ++ +     +       
Sbjct: 533 EARVARPGLFVTLFLMCCGASLLLLPFIGRDFFPAVDAGTIALHMRAKTGMRVEETAVLT 592

Query: 614 EKNFLVRLQYQPGDS 628
           ++      Q  P   
Sbjct: 593 DRVDARIRQLIPAGE 607



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 61/155 (39%), Gaps = 4/155 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    ++ L +  ++   +  G   N+  +  +   +G
Sbjct: 338 ALIAACLTGLMILLFLGNWRATLIIAVSIPLSMITSIIALSALGQTINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +           +    I    ++    ++ ++++  I  +PM +  G
Sbjct: 398 ILVDDATVAIENI---SHQLEQGKTLEQAILDGAHQIAIPTLVSTLSICIVFVPMFLLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                F IP+A  +V A  +S F +  ++  +  +
Sbjct: 455 VAHYLF-IPLAEAVVFAMLASYFFSRTLVPTLAKY 488



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 53/141 (37%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      IT L   +   +    L     ++ A+   +  IG +  + ++V    R+ +
Sbjct: 907  SWLDPFIIITALPGALAGIVWMLFLTHTTLSIPALTGAIMCIGIATANSILVISFAREQL 966

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
             L+    + R  I+          + T++A  I ++PMA+    GG         +  G+
Sbjct: 967  LLH--GDATRAAIEAGFTR-FRPVLMTALAMVIGMVPMAIGLGEGGEQNAPLGRAVIGGL 1023

Query: 806  VVAASSSIFIAAPILLFIYDW 826
             V   +++ +   +   IY  
Sbjct: 1024 AVGTLATLILVPVVFSMIYRR 1044


>gi|71281470|ref|YP_271267.1| AcrB/AcrD/AcrF family protein [Colwellia psychrerythraea 34H]
 gi|71147210|gb|AAZ27683.1| AcrB/AcrD/AcrF family protein [Colwellia psychrerythraea 34H]
          Length = 1052

 Score =  130 bits (326), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 76/664 (11%), Positives = 183/664 (27%), Gaps = 43/664 (6%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL---EVDEDDFVN 67
             ++  + LLI+          +  P                  ++ +    +  +D   
Sbjct: 14  SVLMLFVLLLISGAVTYNNIAKEANPDITIPI-----------IYVSMIHDGISPEDAER 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             ++   +EL+S +        +  +    +TL F      +     V   +    +KL 
Sbjct: 63  MLVRPMENELKS-IAGIKEMRSNAGEGHASVTLEFIAGLDPKEALADVRDKVTLAKAKLP 121

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            + ++ ++   T       L+      V    +   + I R   D+I   +  ++     
Sbjct: 122 NETEEPVVNEVTMANQEAALTVVLSGAVTERGL---ITIARNVKDKIEGMQEVLEVEIGG 178

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                +    DP  +         +                        + N  LV    
Sbjct: 179 DREDMVEIIVDPLLMESYGLDQTDIYNLV--------------------ERNNRLVPAGT 218

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
             +G            +  + ++++     G R         + +          L    
Sbjct: 219 MDTGKGRFAIKVPSVFENIQDLLELPIKVDGDRVITFQDVSTVRRAYKDPTGFARLNGHR 278

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                   ++  +   T++    +    R                     + +  +    
Sbjct: 279 SVSIEVKKRSGENLIETVDKVKEIVNESRLKWPQQVKVDYVGDQSIEIKNTLTDLQNNVF 338

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               LV+IV+   +      L+   +I    +  + +++L G T+ +  + G+++ +G+ 
Sbjct: 339 SAVLLVVIVIIAALGGRT-ALLVGLAIPGAFLTGILVIALAGMTVNIVVLFGLIMAVGML 397

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGA 484
           VD  I+V E    +  +  S   +      R    I  S  T L A   L F+    G  
Sbjct: 398 VDGAIVVTEFADRQMNEGHSKAVAYGTAARRMAWPIIASTATTLAAFAPLMFWPGIMGEF 457

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           ++    T+   +  S+  A+  V  +   + + + + S +   +             F  
Sbjct: 458 MKYLPFTLIAVLSASLAMALIFVPTLGAVLGKARVVSSKEQQQIEHAEAGEFNKLSGFTG 517

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            R+  V  + +     I           +   G   LGV     V+       + S    
Sbjct: 518 -RYIRVLTTAIRHPWKIVAGTFAISFVVMWLYGASGLGVSFFPEVEPQSATMVVRSHGDL 576

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            +  ++          L  +  +++                     ++ +         E
Sbjct: 577 SVKEKDVIMRSIEARILPLEEIETLYTRTGGNNQIGTFKLNFVDWQVRRSADEIVANIHE 636

Query: 665 LIRK 668
           L   
Sbjct: 637 LTDD 640



 Score = 62.4 bits (149), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 81/235 (34%), Gaps = 20/235 (8%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +   +V +Q            L ++++++  +    ++        +  +E     +   
Sbjct: 797  DAKRVVTVQANLIAGAQLLNELPILQEQLPTLGLHPSVDIDVKGQNEDQQESQAFLVNAF 856

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIG 731
             I+   M + +  +F  +Y AL  ++ +I           L    F +      V++L G
Sbjct: 857  AIALFVMAMILVTQFNSFYQALLILSAVIFSTVGVFLALLLVQKPFGIVMGGIGVISLAG 916

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM----- 786
              VN+ +V+ D       L        + + ++  + L   + T++   + +LPM     
Sbjct: 917  IVVNNNIVLIDTYN---VLRKEGYPVVEAVLRTGAQRLRPVMLTTITTILGLLPMVLQVN 973

Query: 787  -------AVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                    V+G          A  +A G+  A   ++ +   +L+     +    
Sbjct: 974  LDFFERTIVFGAPSTQWWTQLATAIAGGLAFATVLTLVLTPCLLVLRDKRKEDKQ 1028



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/253 (10%), Positives = 73/253 (28%), Gaps = 11/253 (4%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMVKKKI 642
                 D+S VR   +          +         R  +           ++   + K 
Sbjct: 251 RVITFQDVSTVRRAYKDPTGFARLNGHRSVSIEVKKRSGENLIETVDKVKEIVNESRLKW 310

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            + V +  + +  I       +L       V++  I ++  +  R      L      + 
Sbjct: 311 PQQVKVDYVGDQSIEIKNTLTDLQNNVFSAVLLVVIVIIAALGGRTALLVGLAIPGAFLT 370

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I       AL G+  N+  +  ++  +G  V+  +VV +      +      S      
Sbjct: 371 GILVI----ALAGMTVNIVVLFGLIMAVGMLVDGAIVVTEFA---DRQMNEGHSKAVAYG 423

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +        + ++     +  P+  W    G  +      +   +  + + ++     +
Sbjct: 424 TAARRMAWPIIASTATTLAAFAPLMFWPGIMGEFMKYLPFTLIAVLSASLAMALIFVPTL 483

Query: 820 LLFIYDWRAKNAR 832
              +   R  +++
Sbjct: 484 GAVLGKARVVSSK 496


>gi|257469241|ref|ZP_05633335.1| acriflavin resistance protein B [Fusobacterium ulcerans ATCC 49185]
 gi|317063488|ref|ZP_07927973.1| acriflavin resistance protein B [Fusobacterium ulcerans ATCC 49185]
 gi|313689164|gb|EFS25999.1| acriflavin resistance protein B [Fusobacterium ulcerans ATCC 49185]
          Length = 1013

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/600 (12%), Positives = 173/600 (28%), Gaps = 43/600 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +    +   G+L      L +  ++  P+                  +  +  
Sbjct: 10  RKPATATMFIISMIFFGIL-----GLKKMPIEMLPNINKPTVR---------IRIKWDGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V+  +    +++   ++            Q+ I + F      E     +   +  
Sbjct: 56  TPSDVDKMITRKIEDVLPNVEGIVEYTSESSAEQSLIFVKFKYGTEVETKITLIQNEINQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + +K   D K+  +  ++  ++  +             +E            +       
Sbjct: 116 IRNKFPDDMKEPSIRKSSMSDVPAITFSMAGGDR----MEMRSYAENNLKPMLERLSGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++  E DP++L         +                        +    
Sbjct: 172 QIQVFGGQEQEVSVEVDPNKLENYNLGIMDVYNKM--------------------NKASV 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +   +   G          + +T   + +I                 I           
Sbjct: 212 NLPGGILREGEKEYLIKIEAEIETADQIKEIVLSNKDGHLLKLKDIAKIQVAPKDRTSIY 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I S     +    +     +    R       +   E  +    L S S 
Sbjct: 272 RKNGKDSIVVIVSKTDDGNSVSIVNETKKVIERNRGSLPINTVLNYEFDSSVTILNSISN 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K +      L  ++LF+ +      L+   +I +++I T  LL++ G ++ L S+ G+ 
Sbjct: 332 VKSSGLQGLVLASVILFVFLKSISATLIIAVAIPISIIFTFFLLNIQGISINLISLMGLS 391

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           LGIG+ VD++++V + I     +  ++   +   G       +  S +T + A + L F 
Sbjct: 392 LGIGMLVDNSVVVVDNIFRHMTELGKTKLQAARDGAEEMALPVLASTMTTVAAFLPLVFQ 451

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G            +  S+L S+  +++ V  +   ++  KK  + +   +  F  I   
Sbjct: 452 EGLAKEQFNNLCYAISYSLLASLVISLTFVPMIASKVMDSKKDLNAEGKMMIGFRKIYVS 511

Query: 538 IAIQFMRAR-FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                +R R      +++LF+          G       +G   +        D++    
Sbjct: 512 TLKWAIRHRGAVLGILAVLFAGSMFVASKIGGRYIPTVDEGRYAVVAKLPSGADVNKADR 571



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 82/250 (32%), Gaps = 9/250 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           ++ +     + +S +           I  ++   +      L+ +   + AQ  V   ++
Sbjct: 755 RITLPNGGNIRISDIAEFRAEEGPSKIEKKDKKKKIVIYANLKDELDLATAQKYVTATLE 814

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           +                   ++  +L  K    + +  I   I +W    +      I +
Sbjct: 815 EMGYPDGLTYGTGGKSADMAEMENQL--KATFAIAVFLIY-FILVWQFESFIMPFVIILS 871

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + L  T         G+  +       + L G  VN+ +V+ D +  N++      +   
Sbjct: 872 IPLSTTGAFYALYAAGLSIDAMVSVGFVMLAGIVVNNAIVLIDFI--NIRRAA-GDNMNK 928

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +  +    L   + T++   + ++P+      G  +    +  + FG+  A   ++ + 
Sbjct: 929 ALITAGKTRLRPIMMTTLTTVLGMVPLMFSNGEGSEIYKGMSFVVVFGLSTATLLTLVVI 988

Query: 817 APILLFIYDW 826
                 I D+
Sbjct: 989 PVFYYLIDDF 998



 Score = 43.9 bits (101), Expect = 0.10,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 76/204 (37%), Gaps = 6/204 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               +V+E  +  +     L+   ++ +        +   G+ G++++++ + +++    
Sbjct: 296 NETKKVIERNRGSLPINTVLNYEFDSSVTILNSISNVKSSGLQGLVLASVILFVFL---K 352

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L     + + I  T     + GI  NL ++  +   IG  V++ VVV D + ++M
Sbjct: 353 SISATLIIAVAIPISIIFTFFLLNIQGISINLISLMGLSLGIGMLVDNSVVVVDNIFRHM 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                +            E     + ++M    + LP+    G     F   + + I  +
Sbjct: 413 TELGKTK--LQAARDGAEEMALPVLASTMTTVAAFLPLVFQEGLAKEQFN-NLCYAISYS 469

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
             +S+ I+   +  I      + +
Sbjct: 470 LLASLVISLTFVPMIASKVMDSKK 493


>gi|196230680|ref|ZP_03129541.1| cation efflux system protein CusA [Chthoniobacter flavus Ellin428]
 gi|196225021|gb|EDY19530.1| cation efflux system protein CusA [Chthoniobacter flavus Ellin428]
          Length = 569

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/561 (12%), Positives = 151/561 (26%), Gaps = 46/561 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +L+ ++++      ++AL     ++ LD  P       I              E   
Sbjct: 20  RNKFLIFIFTVFAVAAGILALL----RTPLDAIPDLSDVQVI---------ISTDWEGRS 66

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +            K           ++ I + F D         +V  +L  V
Sbjct: 67  PDLVEDQITYPISTKFIAAPKVKFVRGESMFGKSFIYVIFEDGTDIYWARSRVLEYLNSV 126

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L       +    T             D    +  E            +   +   +
Sbjct: 127 RGSLPEGVNPVIGPDATGVGWVYEY-ALVDDSGKHNLAELRSLQDWHLRYALESVKGVAE 185

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +   + DP+ L       A +       N    G  F V         +  
Sbjct: 186 VAPVGGFVKEYQVDLDPNALVAYNIPLADVVSAIKASNGDVGGKTFEVATTEYYVRGRGY 245

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +I  + L           +   V +  D        +   + +G           
Sbjct: 246 IKSVADIENVVLKVQNGTPVYVKNVGTVHLGADTRRGVAELDGKGETVGG---------- 295

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +    IE        L+         +         L +    
Sbjct: 296 ---------IVVMRYGENALTVIEGVKKKLQELQGSLPEGVRVVPTYDRSELILNAIHTL 346

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +      + +V  V  + + + +  LVA  ++ + +IL+   +  LG T  + S+ GI +
Sbjct: 347 REKLIEESIVVAFVCIIFLWHVRSALVAIITLPVAIILSFLPMFGLGLTSNIMSLGGIAI 406

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN-------------IT 469
            IG  VD+ I++ E   +     +           R    +  +                
Sbjct: 407 AIGAMVDAAIIMVENAHKALEHFRDEQGREPDARERVSVIVGAAKAVGRPLFFSLLVITV 466

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + +    L    G   +  A T   ++  +    +++V  +M+ +IR K    +      
Sbjct: 467 SFVPVFSLTAQEGRLFKPLAYTKTFAMFFAAVLGVTLVPVLMLLLIRGKITPEVRNPVNR 526

Query: 530 RFFLIPDCIAIQFMRARFWGV 550
                        +R R+  +
Sbjct: 527 FLIWAYQPCVDFALRFRWPLI 547



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 71/215 (33%), Gaps = 24/215 (11%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIR 687
               + L+ ++  + E V +    +   +       L  K I   ++++ + + I++W  
Sbjct: 310 EGVKKKLQELQGSLPEGVRVVPTYDRSELILNAIHTLREKLIEESIVVAFVCI-IFLW-- 366

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR---- 743
                AL AI TL + I  +       G+  N+ ++  +   IG  V+  +++ +     
Sbjct: 367 -HVRSALVAIITLPVAIILSFLPMFGLGLTSNIMSLGGIAIAIGAMVDAAIIMVENAHKA 425

Query: 744 ---MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF--- 797
               R        +     +I  +         ++ +   +S +P+          F   
Sbjct: 426 LEHFRDEQGREPDARERVSVIVGAAKAVGRPLFFSLLVITVSFVPVFSLTAQEGRLFKPL 485

Query: 798 ----AIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                  M F  V+          P+L+ +     
Sbjct: 486 AYTKTFAMFFAAVLG-----VTLVPVLMLLLIRGK 515


>gi|302869603|ref|YP_003838240.1| acriflavin resistance protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302572462|gb|ADL48664.1| acriflavin resistance protein [Micromonospora aurantiaca ATCC
           27029]
          Length = 1081

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/515 (11%), Positives = 151/515 (29%), Gaps = 44/515 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQS-MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  L+ L +++     L A+P+   Q      FP+A                        
Sbjct: 11  NRGLIALVALVTTAFGLFAVPSLKQQLLPSLEFPAAFIVA--------------TYPGAA 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        + R+    + + +      +++ +K+   L  +
Sbjct: 57  PEIVESQVAEPIENSLQGIPGLDKVTSTSREGAATVQVQYEFGTDLDDVVNKMETALNRI 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S+L       ++  +T+   ++V++              + ++    + ++   +    
Sbjct: 117 DSQLPEGVDPQVIAGSTDDLPAVVVAATGDGDER----ALAEKLRSAVVPELEALDGVRS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    DP++L         ++        +                    
Sbjct: 173 VDVTGARNQVVTITPDPAKLAAAKVAPTAIASALKSNGVAVPAG---------------- 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G            +T   +  I      A          + + LA       
Sbjct: 217 ----ALADGDRSLPVQVGTPIRTVDDLRGIVLTTAPAAPVRLGDVAAVEQQLAPATSLTR 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +     +              L           V          S    
Sbjct: 273 TNGKPSLGIAVTAAPDGNAVDISHDIRDRLDELG--DAAGAELTVVFDQAPFVERSIESL 330

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   + ++V+ + +L  +  +V   SI L+V++ L +L     +L L ++  + +
Sbjct: 331 TTEGLLGLVMAVVVILVFLLSVRSTVVTAVSIPLSVLVALIVLWSGDYSLNLLTLGALTI 390

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G  VD +I+V E I+      +    ++          +  S +T +     +   G 
Sbjct: 391 AVGRVVDDSIVVLENIKRHLEYGEPKRDAILTAVREVAGAVTASTLTTVAVFAPIALVGG 450

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G     FAIT+ +++L S+  +++++  +  + 
Sbjct: 451 FVGQLFAPFAITVTVALLASLLVSLTVIPVLAYWF 485



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/190 (16%), Positives = 69/190 (36%), Gaps = 8/190 (4%)

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
               G       DGE++  V       +  A T+ L+     +        I        
Sbjct: 781 EQVDGPQQVTRIDGERSVSVTGTATGSNLGATTQELQKRLDALDVPGATYVIGGVSADQA 840

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEF 718
               +L     + V+ +   + + +   F+    AL  + ++    T  +G   + G   
Sbjct: 841 DAFADL----GLAVLAAIAIVFLIMVATFRSLTQALILLISVPFAATGAIGLLLVTGTPL 896

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            + A+  VL L+G  V + +V+ D + +        +   + + +     L   + T++A
Sbjct: 897 GVPALIGVLMLVGIVVTNAIVLLDLINQYRAQ---GMDVTEAVVEGGRRRLRPILMTAVA 953

Query: 779 AFISVLPMAV 788
              ++LPMA+
Sbjct: 954 TIFALLPMAL 963



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             L  +G++G++++ + +L+++         +    ++ L +   L          NL  
Sbjct: 328 ESLTTEGLLGLVMAVVVILVFLL---SVRSTVVTAVSIPLSVLVALIVLWSGDYSLNLLT 384

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+   +G  V+D +VV + ++   +        RD I  ++ E  G    +++     
Sbjct: 385 LGALTIAVGRVVDDSIVVLENIK---RHLEYGEPKRDAILTAVREVAGAVTASTLTTVAV 441

Query: 783 VLPMAVWGGSVIGSFA-IPMAF 803
             P+A+ GG V   FA   +  
Sbjct: 442 FAPIALVGGFVGQLFAPFAITV 463


>gi|170741435|ref|YP_001770090.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
 gi|168195709|gb|ACA17656.1| acriflavin resistance protein [Methylobacterium sp. 4-46]
          Length = 1053

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/517 (11%), Positives = 139/517 (26%), Gaps = 38/517 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L   +   GL            +   P+                    L   
Sbjct: 9   RRPVATILLSLALTLSGLFA-----YRLLPVAALPTVDFPTI---------SVTAQLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +     +  S +        +  Q    IT+ F  SR  +  A  V   +  
Sbjct: 55  SPESMAASVATPLIKEFSTIPAIATISATNYQGFTSITIEFELSRNIDQAAADVQAAITR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L V+              + V+                          +       
Sbjct: 115 TLRRLPVELTIPPSFRKLNPADAPVILLAVSSDTTP-LPTLDAFAQTVISPSLSTITGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  + DP+ L        ++       N S    +          G   
Sbjct: 174 QVFVYGSQKFAVRIQFDPNVLAARGIGVDEVQAAISNANTSTPVGVVE------GRGQNL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   ++                     DI       R         +   +       
Sbjct: 228 TIQTNTQL--------------MNADAFRDIIVAVRNGRPVRLGEVARVIDSVENNRIAS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++    +               V      +   +   
Sbjct: 274 WKDGRRALVLAVQRQPDANTVEVVDRVRAMLPRFEEQLGGAGTIAVVNDRSVSIREAVHD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +  GLV++V+++ +      L+   ++ +++I T   + LLG ++   S+ G+ 
Sbjct: 334 VQFTLLLTIGLVVVVIYLFLGRLAATLIPSIAVPISIIATFGAMYLLGYSIDNISLLGLT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     + +  F +   G      TI    ++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEQGEKPFEAALKGAGEIGFTILSITVSLVAVFIPVLLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
              G     FAI + ++I+ S   ++++   +   + 
Sbjct: 454 GVVGRIFNEFAIVVTIAIVASAVISVTLTPMLAARLP 490



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 60/154 (38%), Gaps = 7/154 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I  + ++IY+    +    L     + + I  T G   L G   +  ++  +   +G 
Sbjct: 340 LTIGLVVVVIYL-FLGRLAATLIPSIAVPISIIATFGAMYLLGYSIDNISLLGLTLAVGL 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +V+ + +   ++         +   K   E     +  +++     +P+ + GG 
Sbjct: 399 VVDDAIVMLENI---VRHVEQGEKPFEAALKGAGEIGFTILSITVSLVAVFIPVLLMGGV 455

Query: 793 VIG---SFAIPMAFGIVVAASSSIFIAAPILLFI 823
           V      FAI +   IV +A  S+ +   +   +
Sbjct: 456 VGRIFNEFAIVVTIAIVASAVISVTLTPMLAARL 489



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/204 (16%), Positives = 75/204 (36%), Gaps = 5/204 (2%)

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            P        V  + + K +  +P +               L  +G++         L+  
Sbjct: 824  PPGVALGQAVSRIAEIKQSLGLPGTLSTTFAGTAQVFQDALANQGLLLAAAVLTIYLVLG 883

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   +   +  +T L       LG   LFG++ ++ A+  VL LIG    + +++ D  
Sbjct: 884  ILYESFIHPITILTGLPAAAVGALGALQLFGMDLSVIAIIGVLMLIGIVKKNAIMMIDVA 943

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
               +       + R  I ++        + T+ AA +  LP+A+       +     + +
Sbjct: 944  L--VLQREQGWTPRAAIREACLLRFRPIMMTTAAAVMGTLPIAIGHGASAELRQPLGVAV 1001

Query: 802  AFGIVVAASSSIFIAAPILLFIYD 825
              G++V+   ++FI   + L +  
Sbjct: 1002 VGGLLVSQLLTLFITPVLYLAMDR 1025


>gi|332992922|gb|AEF02977.1| cation efflux system protein CusA [Alteromonas sp. SN2]
          Length = 1045

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/591 (12%), Positives = 164/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN + V+L ++I   G L A+ N    + +D  P       I                  
Sbjct: 11  NNRFFVLLATLILVGGGLFAIKN----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLSVPGAQTVRGYSFFGDSYVYIIFDDDTDLYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  + +  L    T      +          +   +           ++       +
Sbjct: 118 APNLPENARPQLGPDATGVGWVYLY-ALVDKTGQNDISQLRSLQDWFLKYELQTVPGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP +LR      + +       N      +  +            
Sbjct: 177 VSAIGGMVKQYQVQVDPEKLRAYGIPLSHIQTAIKRGNQEVGASVIEMAEAEYMVRATGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E K +I                   ++ +  ++ G     +   D    P        +
Sbjct: 237 IESKRDIE------------------LIPLGVNDNGTPLLVKDIADVRLGPQMRRGVAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   +   TI+        L+ G       +           +    
Sbjct: 279 NGEGETVGGVVVMRFGENAQKTIDGVKAKLEDLKKGLPDGVEIVTVYDRSALIERAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V    + + +  LVA  SI + +I  + ++ + G    + S+ GI +
Sbjct: 339 ASKLVEEFIVVALVCIAFLFHVRSSLVAIISIPVGIITAIIVMYMQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG   D  I++ E + +   +     ++ +  +    S     +F S +   ++ V +F
Sbjct: 399 AIGAMSDGAIVMIENMHKHMERTPLTKENRWQIVVDSASEVGPALFFSLLIITVSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AI++V  +M + +R K +             + 
Sbjct: 459 TLEAQEGRMFSPLAFTKTYAMAASAALAITLVPVLMGYFVRGKILAESKNPVNRFLTFLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                  +R     +  + L     +  +   G  +      G  + +   
Sbjct: 519 MPTLRTVLRFPKVTMLAAALVLAIGLWPVNKIGSEFIPPLDEGDLMYMPTT 569



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 53/127 (41%), Gaps = 5/127 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++++ + +       F    +L AI ++ + I   +    + GI  N+ ++  +   IG 
Sbjct: 347 IVVALVCI----AFLFHVRSSLVAIISIPVGIITAIIVMYMQGINANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  +V+ + M K+M+    T  +   ++  S +E      ++ +   +S +P+     
Sbjct: 403 MSDGAIVMIENMHKHMERTPLTKENRWQIVVDSASEVGPALFFSLLIITVSFVPVFTLEA 462

Query: 792 SVIGSFA 798
                F+
Sbjct: 463 QEGRMFS 469



 Score = 44.7 bits (103), Expect = 0.071,   Method: Composition-based stats.
 Identities = 33/266 (12%), Positives = 83/266 (31%), Gaps = 20/266 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + L+ V           I  +N        V +      S   +    + +
Sbjct: 780  PIVTPQGKRIALADVADVYIEDGPPGIKSENARLNGWVYVDIDGVDIGSYVVSAQKAVSE 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAIT 698
            + +                 +   +L       V+   IA+++ +  + F+ +  +  I 
Sbjct: 840  QLVLPAGYSVNWSGQYEYMLRAKEKLTY-----VVPLTIAIIVILLYLNFRNFIEVAIIM 894

Query: 699  -TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS- 756
             TL L +  ++    + G  F++      + L G +V   V++   + +  +        
Sbjct: 895  GTLPLSMVGSIWLMYIEGFNFSVAVGVGFIALAGVAVEIGVIMLVYLNQEYQALIEKCKS 954

Query: 757  ---------FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                       + +       +   + T+      +LP+      G  V+   A PM  G
Sbjct: 955  EGVKPTINMLTEAVIHGSGLRVRPVMMTTATIIFGLLPVLYGSGTGSEVMSRIAAPMVGG 1014

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            +V A   ++ +   I       + ++
Sbjct: 1015 MVSALLLTLLVLPAIYFLWKRRQIQH 1040


>gi|209520022|ref|ZP_03268800.1| acriflavin resistance protein [Burkholderia sp. H160]
 gi|209499561|gb|EDZ99638.1| acriflavin resistance protein [Burkholderia sp. H160]
          Length = 1019

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/672 (9%), Positives = 174/672 (25%), Gaps = 41/672 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           + + +++   G+L A      +  +  FP+      +           L       + + 
Sbjct: 15  LFVIALLAIAGVLSAF-----RLPISLFPNVAFPRAV---------VSLDAGDRPAEQMT 60

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             + M  +E    +        +  +   +I+L+F           +    +  + + L 
Sbjct: 61  TLVTMPVEEALRRVPNVRDVNSTTSRGSAEISLNFDWGTDMAQATLQAQSAISEILATLP 120

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                  +         ++       +    A         Q    +   E   +   + 
Sbjct: 121 PGTTMQ-VRRMDPTVFPVLAYSLTSTRQSLSA--LHDLAQFQMRPLLSSVEGVARVEVTG 177

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
               +     DP+RL     +   +S      N                      +    
Sbjct: 178 GAQDEFEVAVDPARLAAFKLSLPDVSKAIGASNVLMANGRIEDHDKLYLVITNSTITQLD 237

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           E+                 + VV  +       +        + + +             
Sbjct: 238 EL-----------------RNVVVSANGNANGAQIRLGDVATVSQGVVPQWMRVTADGQD 280

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                   +   +            A                      + S +  +    
Sbjct: 281 AVLLNVYQQPGANSVAMARAIRARIAAFEPQMPAGVHLSNWYDQSELVIASATSVRDAIM 340

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           I   L  + LF+ +   K   +A   + + +  T+ LL + G    + ++ G+   +GL 
Sbjct: 341 IGVVLAALTLFVFLRNWKITAIAVALVPVVMAATILLLDVFGMGFNIMTLGGMAAAVGLV 400

Query: 428 VDSNILVNERIREENRK-----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           +D  I++ E I    R+           +  + F+R  +    + +   +    L    G
Sbjct: 401 IDDAIVMIEHIVRRMREAGARAFHGRVMAAALEFTRPLAGSSAATLIIFVPLAFLSGVTG 460

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
              +  ++TM  ++LIS       V  +    ++ K  +  +    + +        +  
Sbjct: 461 AFFKALSLTMASALLISFLVTWLAVPILCDHWLKPKDAEEHEDTRFAAWLNRRYAATVGR 520

Query: 543 MRARFWGVGISIL--FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
           + AR   V + ++    I +               +GG  L         ++     ++ 
Sbjct: 521 VIARPPLVLLGVVPLIVIAAFAFTRVGSGFMPSMDEGGFVLDYHTQPGTSITETDRLMKQ 580

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           ++    +  N                +   +      +K    E +     +    +  +
Sbjct: 581 IERIVRANPNVATYSRRTGAGLGGDLNEPNKGDFFVRLKSGKREPIDTVMEEIRSQIETQ 640

Query: 661 ISRELIRKGIVG 672
           +    I    + 
Sbjct: 641 VPGVNIELAQLM 652



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 93/257 (36%), Gaps = 23/257 (8%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQ--NFDGEKNFLVRLQYQPGDSVAQTRVLE 636
             + V AN   + + +R    +     +  Q      +    V L            +  
Sbjct: 240 RNVVVSANGNANGAQIRLGDVATVSQGVVPQWMRVTADGQDAVLLNVYQQPGANSVAMAR 299

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-----IVGVIISAIAMLIYIWIRFKWY 691
            ++ +I    P              S  +I         + + +   A+ +++++R  W 
Sbjct: 300 AIRARIAAFEPQMPAGVHLSNWYDQSELVIASATSVRDAIMIGVVLAALTLFVFLR-NWK 358

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKN 747
               A+  + + +  T+    +FG+ FN+  +  +   +G  ++D +V+ +    RMR+ 
Sbjct: 359 ITAIAVALVPVVMAATILLLDVFGMGFNIMTLGGMAAAVGLVIDDAIVMIEHIVRRMREA 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVY-TSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
                        ++        R +  +S A  I  +P+A   G       + ++ MA 
Sbjct: 419 GARAFHGRVMAAALE------FTRPLAGSSAATLIIFVPLAFLSGVTGAFFKALSLTMAS 472

Query: 804 GIVVAASSSIFIAAPIL 820
            ++++   + ++A PIL
Sbjct: 473 ALLISFLVT-WLAVPIL 488



 Score = 45.8 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 55/166 (33%), Gaps = 4/166 (2%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                +       D       +  V+K + +   L +    E+ G    +++  KG++ V
Sbjct: 801 SNLKRMVAVTARIDGRDLGSTIADVQKALGDANLLPSGVYYELGGLYQQQQIAFKGLLTV 860

Query: 674 -IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
              +   +   +   + +   AL  +   +L          + GIE N++A+  +  +IG
Sbjct: 861 FGAAIALVFGLLLFLYERLRVALAVLVMPLLAAGAVFIGLWITGIELNISAMMGMTMIIG 920

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
                 +     +     +    +   + +  +    L     T++
Sbjct: 921 IVTEVAIFYVSEL--QALVRDDEMPMDEALQAAGRNRLRPIAMTTI 964


>gi|186472341|ref|YP_001859683.1| acriflavin resistance protein [Burkholderia phymatum STM815]
 gi|184194673|gb|ACC72637.1| acriflavin resistance protein [Burkholderia phymatum STM815]
          Length = 1046

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/490 (11%), Positives = 136/490 (27%), Gaps = 38/490 (7%)

Query: 28  PQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87
                  +P+                 +        D ++  +    ++    +      
Sbjct: 35  SALPEIDYPTIQ--------------VYTQYPGASPDVISTSVTAPLEKQFGQMAGLKRM 80

Query: 88  VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
             +     + +TL F  S   +    +V   +   NS L  +     + +      + VL
Sbjct: 81  NSTSSLGVSLVTLQFLTSTNLDEAEQEVQAAINSANSTLPSNLPYPPVYSKVNPADTAVL 140

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           +   +                +   ++           S      +  + D   L  +  
Sbjct: 141 T-LAVTSDALPLTRVEDLTDTRIAQKLSQVSGVGLVTLSGGARPAVRVQTDTRALNAMGL 199

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
           +   +       N +             +      +    +                   
Sbjct: 200 SLEDVRTAVGDANVNSAKGTIDGNLQAFTIDANDQLTSAAD------------------- 240

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
              D+                 I +            A          +   +    ++ 
Sbjct: 241 -YQDLVLAYRKGAPVRLADVARISQTAENPRQAAWSGATPAIIVNVQRQPGANVIEVVDG 299

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
              L   LRA         V          S    K        LV++V+F+ +   ++ 
Sbjct: 300 IEALLPQLRASLPATVKISVLSDRTQTIRASVHDVKMELVAAIALVVMVVFVFLRRLEFT 359

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           L+   ++   ++ T+A +  LG ++   ++  + +  G  VD  I++ E +       ++
Sbjct: 360 LIPAVTVPFALVGTVAGIYALGFSVNNLTLMALTVATGFVVDDAIVMLENVMRHIENGET 419

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAI 504
              +   G  +   TI   ++  +   + LFF     G   R FA+T+ ++I+IS + ++
Sbjct: 420 PLDAALKGARQIGFTILSISVALVAVLIPLFFMPDVIGRLFREFALTLAIAIVISAWVSL 479

Query: 505 SIVRAMMIFI 514
           ++   M   +
Sbjct: 480 TLTPMMAARM 489



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            +  F L    T+   +  T+      G   N   + A+    G+ V+D +V+ + +   
Sbjct: 354 RRLEFTLIPAVTVPFALVGTVAGIYALGFSVNNLTLMALTVATGFVVDDAIVMLENV--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
           M+      +  D   K   +     +  S+A    ++P+       G +   FA+ +A  
Sbjct: 411 MRHIENGETPLDAALKGARQIGFTILSISVALVAVLIPLFFMPDVIGRLFREFALTLAIA 470

Query: 805 IVVAASSSIFIAA 817
           IV++A  S+ +  
Sbjct: 471 IVISAWVSLTLTP 483



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 71/161 (44%), Gaps = 6/161 (3%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +A+ I + I ++     L  ++TL       L    L G E ++  +  ++ L+G
Sbjct: 876  LIGALVAVYILLGILYESLVHPLTILSTLPSAACGALAALLLCGGELDIIGLIGIVLLVG 935

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              + + +++ D   +  +     ++ RD + ++        + T+ A+    LP+A+   
Sbjct: 936  IVMKNAIMMIDFALEQERTL--GLAGRDAMRRACELRFRPILMTTCASLFGALPLALGTG 993

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G  +     I +  G+VV+   ++F    I L ++ +  +
Sbjct: 994  IGHELRQPLGIAIIGGLVVSQLLTLFSTPVIFLALHRFATR 1034


>gi|312149288|gb|ADQ29359.1| protein-export membrane protein SecD [Borrelia burgdorferi N40]
          Length = 586

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 88/211 (41%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +      +  K         I +  I+GP +    I  GI    ++   
Sbjct: 365 NVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++   +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFMCFYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRR---FENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 572



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 130/490 (26%), Positives = 217/490 (44%), Gaps = 47/490 (9%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              I LGLDL GG  + + +D         +                            L
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRS---------------------------L 165

Query: 101 SFADSRF-KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +FA+       I   +   +              ++      +I + +     +  +S  
Sbjct: 166 TFAEREDAIYRIMQILKDRVDRFGLTEPK-----IVREAGGNKIFLDIPGEKDESRVSTL 220

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           +     +    +D    S    + L +  +         P     +     K  F   + 
Sbjct: 221 LSGKGNLTFYVVDDESTSLLHRKILEAGSLFSI------PEIQASMNLPDGKQIFPWYVK 274

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
           ++        VR+             +    G H+  A  + DP+T +  V  S D  G+
Sbjct: 275 DSYGVDDESSVRYY------VVDASPENSFDGAHIKDAGVSNDPRTGRDTVAFSLDVDGS 328

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGILAAMLRAG 338
            +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + A  LA + +  
Sbjct: 329 EKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEAQDLALVFKTA 388

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL-N 397
           + P+ + I + R +G  LG+ +I  G  A    L L+ LFM   YG  G+VA FS+ + N
Sbjct: 389 AFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCLVFLFMCFYYGLSGVVAGFSLVIYN 448

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           V L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +    + + GF 
Sbjct: 449 VFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREGRRFENAFEDGFK 508

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++   R ++ FII  
Sbjct: 509 KAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRFILEFIISV 568

Query: 518 KKMKSIDINP 527
           +K K I I+ 
Sbjct: 569 RKSKFISISW 578


>gi|320109397|ref|YP_004184987.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
 gi|319927918|gb|ADV84993.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
          Length = 1057

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/545 (10%), Positives = 149/545 (27%), Gaps = 38/545 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I  I      P  + ++  D FP+                         
Sbjct: 10  RPYTFIVLAVLILLIS-----PVVILRTPTDIFPNINIPVI---------AVAWQYTGLN 55

Query: 63  DDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
            + + G L    +  + + +        +     + + +        E    +V    Q 
Sbjct: 56  PEEMEGRLTTPYEKAISTLVDNVAHSESTSYNGVSVVKIFLQPGASLETANAQVVGASQY 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  +L    +   ++  +   + I+    +         + +          +      +
Sbjct: 116 LLRQLPPGVQPPEIINFSASSVPILQLGISGKGFNEQ--QLADFSTNTIRPALVTVPGAV 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             L       Q+    D ++++        +       +    G    +        +  
Sbjct: 174 LPLPYGGRTPQISVSMDQAKMQSKGVAPGDLLNAMAAQSVVTPGGTAKIGSNEYDIRSNA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+S                     +   ++     +      +    A   +  
Sbjct: 234 APRTLDELSA--------------------MPVKQVNGATIYLSDVATVSNGSAFQTNVV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             S    +     +   +     P                + S 
Sbjct: 274 RQDGRRGVLISVLKSGNSSTLDVVGGIRGVLPRVAQLVPPELKITPLSDQSVFVRSAVSG 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I AGL  +++ + +   +  L+   SI L+++ ++ +LS  G T+   ++ G+ 
Sbjct: 334 VVREAIIAAGLTGLMILLFLGSWRSTLIIAVSIPLSILTSILVLSAFGETINTMTLGGLA 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD   +  E I     +   +  ++  G ++       S +   I  + +FF  
Sbjct: 394 LAVGILVDDATVTLENIERFLEEGYELREAILDGAAQIAVPALVSTLCICIVFLPMFFLS 453

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G A   FA  +  +++ +M  +    R ++  +  Y      +    +            
Sbjct: 454 GVAKYLFAP-LAEAVMFAMIASYIFSRTLVPTLAMYLLRHKNNEPSRNPLVRFQRGFERT 512

Query: 542 FMRAR 546
           F R R
Sbjct: 513 FERVR 517



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 61/160 (38%), Gaps = 4/160 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    ++ L I  ++   + FG   N   +  +   +G
Sbjct: 338 AIIAAGLTGLMILLFLGSWRSTLIIAVSIPLSILTSILVLSAFGETINTMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +    +        R+ I     +    ++ +++   I  LPM    G
Sbjct: 398 ILVDDATVTLENI---ERFLEEGYELREAILDGAAQIAVPALVSTLCICIVFLPMFFLSG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                FA P+A  ++ A  +S   +  ++  +  +  ++ 
Sbjct: 455 VAKYLFA-PLAEAVMFAMIASYIFSRTLVPTLAMYLLRHK 493



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 80/254 (31%), Gaps = 11/254 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +  N    +      L                 ++ +R       SV    +  + K   
Sbjct: 792  IPINSTTPVQRTTPELLGDLASIKRGHEMSVVSHYNIRRVVDIYGSVQDRDLGAVAKDVQ 851

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-----KWYFALGAI 697
              +     +     +      E +R     +++  +  ++ +++        W      I
Sbjct: 852  KIVDAQKNVPRGMFLSIHGQAETMRSSYTALLVGLVFAVLLVYLLIVVNFQSWLDPFIII 911

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T L   +   + F  L     ++ A+   +  +G +  + ++V    +  +K      + 
Sbjct: 912  TALPAALGGIILFLFLTHTTLSVPALMGAIMCMGVATANSILVVSFAK--IKYEEHGDAI 969

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
               I+          V T++A  I ++PMA+    GG         +  G++ A  +++ 
Sbjct: 970  LAAIEAGATR-FRPVVMTALAMVIGMIPMALGMGDGGEQNAPLGRAVIGGLLCATLATLA 1028

Query: 815  IAAPILLFIYDWRA 828
                +   ++  R 
Sbjct: 1029 FVPAVFALLHGRRK 1042


>gi|254495776|ref|ZP_05108688.1| acriflavin resistance protein [Legionella drancourtii LLAP12]
 gi|254354933|gb|EET13556.1| acriflavin resistance protein [Legionella drancourtii LLAP12]
          Length = 1028

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 68/653 (10%), Positives = 180/653 (27%), Gaps = 43/653 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  MI  +GL       +    + ++P       ++           V    
Sbjct: 9   KRPVLATVISLMILAMGL-----RSMGSLPVMQYP-FTENAIVT--------VTTVYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    +   +          +     + IT++   +         +T  +  
Sbjct: 55  NPDVIAGFITTPLENSIAQANGIDYMTSTSTPGTSTITVNLLLNYDPLKALSDITTKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  + ++ ++  +  + I  +      D++  +  + +  +IR    ++       
Sbjct: 115 VLNQLPKNSQQPVITVSVGQTIDSMYIGFYSDELPIN--KITDYLIRVAQPKLQAVNGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          L    DP +L     + A +       +          +          
Sbjct: 173 KAEILGNQTFALRAWLDPVKLAGYGISAADVGTALANNDFISAVGRTDGQMF-------- 224

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       +    A+ +         +                 +           
Sbjct: 225 ------------IQNFIASTNLTDVDQFKKMIIKAQNGAIIRLGDVATVDLGAQNYNSAV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    I+    +   ++A         +          S   
Sbjct: 273 SFDGRKAVYIGIIVAPSANLLTVIDDIKKIFPTIQAELPQGLKANIVYDASLFVDSSIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      +V  V+F+ +   +  ++   +I L++I    ++ +LG ++ L ++  +V
Sbjct: 333 VILSLLEAFMIVTAVIFIFLGSLRSVIIPLIAIPLSIIGAFWIMLILGYSINLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LGIGL VD  I+V E ++    + ++   +  +G     + I    I  +     + F G
Sbjct: 393 LGIGLVVDDAIIVVENVQRHIEEGRTRLKAALLGARELANPIIAITIVLVAVYAPIGFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP----LSRFFLI 534
              G     FA T+  ++ IS   A+++   M    ++     + +            L 
Sbjct: 453 GLTGALFTEFAFTLVGAVTISAIVALTLSPMMCSKFLKVGDGATKNWFMVYVDKHFARLE 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                I     R+  V       I +            +  +    + +        + +
Sbjct: 513 RGYERILLKTFRYLPVVAVFAAIILASNYFLFITSASELAPQEDQGIVISQVTAPANASL 572

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
                     +   + F    +          ++     VL+   ++      
Sbjct: 573 AQTQLYSNEVNRIIKTFPETDHIFQVDGNTALNNAVVGMVLKPWDQRKRTSNQ 625



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/168 (13%), Positives = 60/168 (35%), Gaps = 9/168 (5%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDI--TKTLGFFALFGIEFNLTAVAAV 726
            I+    + I + + +   F+ +   L  + ++ + I          + G   N+ +   +
Sbjct: 851  IITFFFALILIFLALAALFESFRDPLIVLISVPMSICGAMIFVSLGIGGATLNIYSEVGL 910

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TLIG      +++              +             L   + T+ A  + V+P+
Sbjct: 911  VTLIGLISKHGILIVQFANDLQAAGQNKLDAIRAAAA---IRLRPILMTTAAMVLGVVPL 967

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +    G     +  + ++ GI +    ++F+   + L + +   K A
Sbjct: 968  IIATGAGAESRYNIGLVISTGISIGTLFTLFVVPAMYLLLAEDHQKKA 1015



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/192 (11%), Positives = 68/192 (35%), Gaps = 9/192 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               ++   ++ ++ + +  + + +  +       E+I   +   +I    + I++    
Sbjct: 297 DDIKKIFPTIQAELPQGLKANIVYDASLFVDSSIHEVILSLLEAFMIVTAVIFIFLG--- 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +  +  + L I        + G   NL  + A++  IG  V+D ++V + +    
Sbjct: 354 SLRSVIIPLIAIPLSIIGAFWIMLILGYSINLLTLLALVLGIGLVVDDAIIVVENV---Q 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      +          E     +  ++       P+   G   G++   FA  +   +
Sbjct: 411 RHIEEGRTRLKAALLGARELANPIIAITIVLVAVYAPIGFMGGLTGALFTEFAFTLVGAV 470

Query: 806 VVAASSSIFIAA 817
            ++A  ++ ++ 
Sbjct: 471 TISAIVALTLSP 482


>gi|207739771|ref|YP_002258164.1| multidrug efflux system transmembrane protein (partial sequence)
           [Ralstonia solanacearum IPO1609]
 gi|206593153|emb|CAQ60059.1| probable multidrug efflux system transmembrane protein (partial
           sequence) [Ralstonia solanacearum IPO1609]
          Length = 376

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/402 (9%), Positives = 94/402 (23%), Gaps = 37/402 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  ++   I  +G++       P+  + R+PS  P               + L   
Sbjct: 7   QRPVFAWVIALFIILLGVIAI-----PKLPIARYPSVAPPT-------------VNLSAT 48

Query: 62  EDDFVNGFLQM-YSDELRSFLKKEGIG----VFSMRQIQNKITLSFADSRFKENIADKVT 116
                   +       +   L            S       I  +F            V 
Sbjct: 49  YPGATPQTMNDGVISLIERELSSVKNLLYFESSSDTSGSASIIATFKPGTDPAMAQVDVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L+ +  +L    ++N L   +     +++     +         S  + R  ++++  
Sbjct: 109 NKLKAIEPRLPQVVRQNGLTVESASSGFLMIIGLQSNDGRFDETALSDYMARNVVEELRR 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   +          +    DP++L     +   +S      N        G      +
Sbjct: 169 IEGVGRVQLFGA-EQAMRIWVDPAKLIAYGLSMNDLSAAVSQQNAQIAPGSVGASPALPA 227

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +  + +++                +    +        +        +      
Sbjct: 228 QRVTVPLTVQGQLT-------------SPEQFAAIVLRANANGSKVVMGDVARVELGAQS 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A        +   T E      A L           +         
Sbjct: 275 YGFINRENGKAATAAAVQLAPGANAVRTAEGVQARMAELSKTMPAGMSYSIPLNTAPFVK 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
            S      T      LV +V+++ +   ++ L+      + +
Sbjct: 335 ISIEKVIQTLIEAMVLVFLVMYLFLQNVRYTLIPAIVAPIAL 376


>gi|216263633|ref|ZP_03435628.1| protein-export membrane protein SecD [Borrelia afzelii ACA-1]
 gi|215980477|gb|EEC21298.1| protein-export membrane protein SecD [Borrelia afzelii ACA-1]
          Length = 586

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 91/211 (43%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +  +   +  K         I +  I+GP +  + I  G+   +++   
Sbjct: 365 NVSIQGDSFDKKEALDLALVFKTAAFPVEIKIDDLRIIGPTLGAKTIDLGVKASVLALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++ + +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFMCVYYGLSGLVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F    +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRK---FEKAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 572



 Score =  117 bits (292), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 130/505 (25%), Positives = 221/505 (43%), Gaps = 69/505 (13%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGF------------LQMYSDELRSFLKKEGIGV 88
              I LGLDL GG  + + +D                    +      L+  + + G+  
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRSLTFAEKEDAIYRIMQILKDRVDRFGLTE 192

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             + +                            +   +  +  ++ + T    + ++   
Sbjct: 193 PKIAREAGG----------------------NKIFLDIPGEKDESRVGTLLSGKGNLTFY 230

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                     +     + I +      I+E            I     +DP         
Sbjct: 231 VV-----DDESTSLLHKKILEAGSLFSIAEIQTNMNLPDSKQIFPWYVKDP--------- 276

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
                              +GV            V  +    G H+  A  + DP+T + 
Sbjct: 277 -------------------YGVDDESSVRYYVVDVSPENSFDGAHIKDAGVSNDPRTGRD 317

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIET 327
           +V  + D  G+ +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + 
Sbjct: 318 IVAFNLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKE 377

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  LA + +  + P+++ I + R +G  LG+ +I  G  A V  L L+ LFM V YG  G
Sbjct: 378 ALDLALVFKTAAFPVEIKIDDLRIIGPTLGAKTIDLGVKASVLALCLVFLFMCVYYGLSG 437

Query: 388 LVADFSIFL-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           LVA FS+ + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +
Sbjct: 438 LVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREGR 497

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
               + + GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++  
Sbjct: 498 KFEKAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIF 557

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRF 531
            R ++ FII  +K K + I+  S++
Sbjct: 558 SRFILEFIISVRKSKFVSISWSSKY 582


>gi|111115485|ref|YP_710103.1| preprotein translocase subunit SecD [Borrelia afzelii PKo]
 gi|110890759|gb|ABH01927.1| protein-export membrane protein [Borrelia afzelii PKo]
          Length = 586

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 91/211 (43%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +  +   +  K         I +  I+GP +  + I  G+   +++   
Sbjct: 365 NVSIQGDSFDKKEALDLALVFKTAAFPVEIKIDDLRIIGPTLGAKTIDLGVKASVLALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++ + +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFMCVYYGLSGLVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F    +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRK---FEKAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 572



 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 128/505 (25%), Positives = 223/505 (44%), Gaps = 69/505 (13%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGF------------LQMYSDELRSFLKKEGIGV 88
              I LGLDL GG  + + +D                    +      L+  + + G+  
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRSLTFAEKEDAIYRIMQILKDRVDRFGLTE 192

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             + +                            +   +  +  ++ + T    + ++   
Sbjct: 193 PKIAREAGG----------------------NKIFLDIPGEKDESRVGTLLSGKGNLTFY 230

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                     +     + I +      I+E            I     +DP         
Sbjct: 231 VV-----DDESTSLLHKKILEAGSLFSIAEIQTNMNLPDSKQIFPWYVKDP--------- 276

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
                 + V   +S + ++                       G H+  A  + DP+T + 
Sbjct: 277 ------YGVDDESSVRYYVVDASPENS-------------FDGAHIKDAGVSNDPRTGRD 317

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIET 327
           +V  + D  G+ +FF+ T+ N+G+ LAVV++G++ +   I  AI  G   I G +F  + 
Sbjct: 318 IVAFNLDVDGSEKFFKFTQKNVGRSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKE 377

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  LA + +  + P+++ I + R +G  LG+ +I  G  A V  L L+ LFM V YG  G
Sbjct: 378 ALDLALVFKTAAFPVEIKIDDLRIIGPTLGAKTIDLGVKASVLALCLVFLFMCVYYGLSG 437

Query: 388 LVADFSIFL-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
           LVA FS+ + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +
Sbjct: 438 LVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREGR 497

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
               + + GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++  
Sbjct: 498 KFEKAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIF 557

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRF 531
            R ++ FII  +K K + I+  S++
Sbjct: 558 SRFILEFIISVRKSKFVSISWSSKY 582


>gi|238023620|ref|YP_002907852.1| Acriflavin resistance protein [Burkholderia glumae BGR1]
 gi|237878285|gb|ACR30617.1| Acriflavin resistance protein [Burkholderia glumae BGR1]
          Length = 1028

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 59/504 (11%), Positives = 141/504 (27%), Gaps = 35/504 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++   +I  +GL       L    + ++P  +    IS+     G S  +++  
Sbjct: 16  RRPVLSMVCSLLILLVGL-----RSLVALPVRQYP-MLESATISVETAYPGASQALMQ-- 67

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
                 GF+     +  +          +  Q ++ +      +   +    ++   +Q 
Sbjct: 68  ------GFVTTPIAQSIATADGVEYLTSTSTQGKSVVKARLRLNANADRAMTEIMAKVQE 121

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  K+      +++   T+   +++    + D +     E +  ++R     +       
Sbjct: 122 VKYKMPEGAYDSVITKLTDAPTAVMYLGFSSDTL--SIPEITDYVVRVAQPLVTTVPGVA 179

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                    + +    D SRL     +   ++      N                     
Sbjct: 180 SAEIVGGQNLAMRVWLDASRLAAHGLSAGDVAAALKANNVQAAPGQLKGEL------TVA 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +++                     +   E             I           
Sbjct: 234 DISADTDLT-------------DVGAFGNLVVKSEANGSFVRLRDVATIELGGQQYNASA 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           ++          +     +    +     L   +                      S   
Sbjct: 281 LMNGRRAVNIAINATPSGNPLDIVRGVKALLPTMERSKPASVRIGDVFDVARFVNASIDE 340

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T      +V++V+F+ +   +  ++   +I L ++ + AL+   G +L L ++  +V
Sbjct: 341 VRETIIEAIAIVVVVIFLFLGSFRAVIIPVVTIPLALVGSAALMLAAGFSLNLLTLLAMV 400

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I       +    +  +G     S +    IT +     +   G
Sbjct: 401 LAIGLVVDDAIVVVENIHRHMESGEPPARAALLGAREIASPVIVMTITLVAVYAPIGLMG 460

Query: 482 GGAVRGFAITMGLSILISMFTAIS 505
           G     F             +A+ 
Sbjct: 461 GLTGSLFREFAFTLAGAVCVSAVI 484



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 9/149 (6%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            E+    I  + I  + + +++     +   +  + T+ L +  +       G   NL  
Sbjct: 339 DEVRETIIEAIAIVVVVIFLFLG---SFRAVIIPVVTIPLALVGSAALMLAAGFSLNLLT 395

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A++  IG  V+D +VV + +    +   +             E     +  ++     
Sbjct: 396 LLAMVLAIGLVVDDAIVVVENIH---RHMESGEPPARAALLGAREIASPVIVMTITLVAV 452

Query: 783 VLPMAVWG---GSVIGSFAIPMAFGIVVA 808
             P+ + G   GS+   FA  +A  + V+
Sbjct: 453 YAPIGLMGGLTGSLFREFAFTLAGAVCVS 481



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 70/200 (35%), Gaps = 10/200 (5%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
            + +E ++K+                  +    L        + + + + + +  +F+   
Sbjct: 821  QAVEFLEKQPLPAGYDIDWLGESRQYVQEGNRLTVT----FVFALVVIFLVLAAQFESLR 876

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + ++ L +   L    L     N+     ++TLIG      +++     +  +  
Sbjct: 877  DPLVILVSVPLSVCGALVPLYLGFATLNIYTQIGLVTLIGLISKHGILMVSFANELQR-- 934

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
            T  +  R  I+ +    L   + T+ A    ++P+      G +   +  I ++ G++V 
Sbjct: 935  TQHLDRRAAIEHAAAVRLRPILMTTAAMVAGLVPLIFARGAGAASRFAIGITVSTGMLVG 994

Query: 809  ASSSIFIAAPILLFIYDWRA 828
               ++F+   +   I     
Sbjct: 995  TLFTLFVLPTVYTLIAKRHR 1014


>gi|195941472|ref|ZP_03086854.1| preprotein translocase subunit SecD [Borrelia burgdorferi 80a]
 gi|216264481|ref|ZP_03436473.1| protein-export membrane protein SecD [Borrelia burgdorferi 156a]
 gi|225548819|ref|ZP_03769796.1| protein-export membrane protein SecD [Borrelia burgdorferi 94a]
 gi|226320349|ref|ZP_03795918.1| protein-export membrane protein SecD [Borrelia burgdorferi 29805]
 gi|226321350|ref|ZP_03796877.1| protein-export membrane protein SecD [Borrelia burgdorferi Bol26]
 gi|215980954|gb|EEC21761.1| protein-export membrane protein SecD [Borrelia burgdorferi 156a]
 gi|225370422|gb|EEG99858.1| protein-export membrane protein SecD [Borrelia burgdorferi 94a]
 gi|226233146|gb|EEH31898.1| protein-export membrane protein SecD [Borrelia burgdorferi Bol26]
 gi|226234212|gb|EEH32924.1| protein-export membrane protein SecD [Borrelia burgdorferi 29805]
          Length = 586

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 88/211 (41%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +      +  K         I +  I+GP +    I  GI    ++   
Sbjct: 365 NVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++   +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFMCFYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRR---FENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 572



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 130/490 (26%), Positives = 218/490 (44%), Gaps = 47/490 (9%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              I LGLDL GG  + + +D         +                            L
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRS---------------------------L 165

Query: 101 SFADSRF-KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +FA+       I   +   +              ++      +I + +     +  +S  
Sbjct: 166 TFAEREDAIYRIMQILKDRVDRFGLTEPK-----IVREAGGNKIFLDIPGEKDESRVSTL 220

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           +     +    +D    S    + L +  +         P     +    +K  F   + 
Sbjct: 221 LSGKGNLTFYVVDDESTSLLHRKILEAGSLFSI------PEIQASMNLPDSKQIFPWYVK 274

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
           ++        VR+             +    G H+  A  + DP+T +  V  S D  G+
Sbjct: 275 DSYGVDDESSVRYY------VVDASPENSFDGAHIKDAGVSNDPRTGRDTVAFSLDVDGS 328

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGILAAMLRAG 338
            +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + A  LA + +  
Sbjct: 329 EKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEAQDLALVFKTA 388

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL-N 397
           + P+ + I + R +G  LG+ +I  G  A    L L+ LFM   YG  G+VA FS+ + N
Sbjct: 389 AFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCLVFLFMCFYYGLSGVVAGFSLVIYN 448

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           V L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +    + + GF 
Sbjct: 449 VFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREGRRFENAFEDGFK 508

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++   R ++ FII  
Sbjct: 509 KAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRFILEFIISV 568

Query: 518 KKMKSIDINP 527
           +K K I I+ 
Sbjct: 569 RKSKFISISW 578


>gi|91778713|ref|YP_553921.1| cation efflux transporter [Burkholderia xenovorans LB400]
 gi|91691373|gb|ABE34571.1| cation/multidrug efflux pump, RND family [Burkholderia xenovorans
           LB400]
          Length = 1081

 Score =  130 bits (326), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 85/685 (12%), Positives = 179/685 (26%), Gaps = 45/685 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G L  L     ++  D FP+                  +V   
Sbjct: 8   LRRPYTFVVLAVLIFIAGPLAIL-----RTPTDIFPNIDIPV-----------VSIVWTY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 D  N     Y   L S +              + + + F           +   
Sbjct: 52  NGFSAQDMANRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + + +     +       Q   Q+   
Sbjct: 112 NSASILRVLPPGTLPPNIITYNASTVPILQLGLSSNTLSEQ--QLYDLGNSQIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + DP  L+        +       N    G    +     + 
Sbjct: 170 QGASVPLPFGGKVRQIMVDIDPRALQAKGLAPLDVVNAVNAQNLILPGGTAKIGTKEYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 E    +                     D+    +     +     ++    A  
Sbjct: 230 QMNGSTETVAAL--------------------NDLPIKTVAGGVVYVRDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    I+    +   + AG                   
Sbjct: 270 TNIVRSDGKRAALLTIEKSGSTSTLTIIQQVKSMLPHIAAGLPGALHITALSDQSVFVKS 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   SI L V+ +L  LS LG T+ + ++
Sbjct: 330 AVVGVAREALIAAALTAVMILLFLGSWRATLIIAVSIPLAVLTSLIALSALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I       + ++ ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLENGEPLYDAILNGSGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFFL 533
           F   G         A  +  +++ S F + ++V  + M  +            P++R   
Sbjct: 450 FLLSGVARYLFVPLAEAVVFAMIASYFFSRTLVPTLAMYLMRARGNAPVTGNGPIARLIR 509

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  +F   R    G+           +    L            G      VD   
Sbjct: 510 FQAGFEHRFELLRERYRGVLAAAIASPRRFIAIFLLLCLGSLALVPFAGRDFFPAVDTGE 569

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R +L +     I       ++         P   +A       V      +   S+   
Sbjct: 570 IRLHLRAPTGTRIEDTASITDQVEARVRDVIPKQQLAAILDNIGVPVSGINLTYDSSDPI 629

Query: 654 TEIVGPKISRELIRKGIVGVIISAI 678
                  +     +     + ++ +
Sbjct: 630 GPEDADVMITLAPKHKPTALYVATL 654



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 8/234 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR                  +      L  +   S +   +++ VK  +  I        
Sbjct: 256 VRDVAHVRDGYAPQTNIVRSDGKRAALLTIEKSGSTSTLTIIQQVKSMLPHIAAGLPGAL 315

Query: 654 TEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                   S  +           +I +A+  ++ +     W   L    ++ L +  +L 
Sbjct: 316 HITALSDQSVFVKSAVVGVAREALIAAALTAVMILLFLGSWRATLIIAVSIPLAVLTSLI 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             +  G   N+  +  +   +G  V+D  V  + +              D I     E  
Sbjct: 376 ALSALGQTINIMTLGGLALAVGILVDDATVAIENI---THHLENGEPLYDAILNGSGEIA 432

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +  ++++  I  +PM +  G     F +P+A  +V A  +S F +  ++  +
Sbjct: 433 VPTFVSTLSICIVFVPMFLLSGVARYLF-VPLAEAVVFAMIASYFFSRTLVPTL 485



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/158 (13%), Positives = 57/158 (36%), Gaps = 7/158 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ +   + + + + F  W      I+ L   +          G   ++ A+   +  IG
Sbjct: 906  LVFAIGLVYLLMVVNFQSWLDPFIIISGLPGSLAGIAWMLFSTGTRLSVPALTGTILCIG 965

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+    +           ++        + T++A  I +LPMA+   
Sbjct: 966  IATANSILVINTARE---AHQAGQPPLAAALEAGFSRFRPVLMTALAMLIGMLPMALGLG 1022

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             GG         +  G+ +   S++     +   ++ W
Sbjct: 1023 DGGEQNAPLGRAVIGGLALGTMSTLLFVPVVYGMVHAW 1060



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 85/539 (15%), Positives = 159/539 (29%), Gaps = 41/539 (7%)

Query: 13   MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
             I    LL      L       F  A+    I L L    G+ +       D V   ++ 
Sbjct: 539  FIAIFLLLCLGSLALVPFAGRDFFPAVDTGEIRLHLRAPTGTRIEDTASITDQVEARVRD 598

Query: 73   YS--DELRSFLKKEGIGVFSMR----------QIQNKITLSFADSRFKEN-----IADKV 115
                 +L + L   G+ V  +                + ++ A            +   +
Sbjct: 599  VIPKQQLAAILDNIGVPVSGINLTYDSSDPIGPEDADVMITLAPKHKPTALYVATLRTTL 658

Query: 116  TLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME------IIR 168
            T    GV  + L  D    +L       I I +  N +D   S A     +      ++ 
Sbjct: 659  TKDFPGVTFAFLPADIVSQILNFGLPAPIDIQIVGNQLDANRSVANRLLAQLRGVRGLVD 718

Query: 169  QRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
             RI Q G + +    +   R +     ++D   + L  L G++       + P+N     
Sbjct: 719  ARIQQPGDAPAINVNVDRTRAIQAGLLQRDVSQNLLIALSGSSQTSPNFWLDPHNGVSYP 778

Query: 227  MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
            +  +    D +  Q L    VE  G                  V  SF   GA    +  
Sbjct: 779  LMAMMPQYDINSLQALANIPVEQKGGATAS------------AVAASFPASGAGPAPQNL 826

Query: 287  RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
               +           V    V          Q      +              LP   +I
Sbjct: 827  LGALSTLTRGTQQAVVSHYNVQPVLDIFASVQGRDLGGVAADVNRLVEQIRPQLPPGASI 886

Query: 347  VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            V    V A   S S          GLV +++ +         +    +  ++     +L 
Sbjct: 887  VVRGQVQAMHDSFSGLASGLVFAIGLVYLLMVVNFQSWLDPFIIISGLPGSLAGIAWMLF 946

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
              G  L++P++ G +L IG+A  ++ILV    RE ++  Q    +        +  +  +
Sbjct: 947  STGTRLSVPALTGTILCIGIATANSILVINTAREAHQAGQPPLAAALEAGFSRFRPVLMT 1006

Query: 467  NITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             +  LI  + +      GG         +   + +   + +  V  +   +  +   + 
Sbjct: 1007 ALAMLIGMLPMALGLGDGGEQNAPLGRAVIGGLALGTMSTLLFVPVVYGMVHAWLDQRR 1065


>gi|153801772|ref|ZP_01956358.1| cation efflux system protein CusA [Vibrio cholerae MZO-3]
 gi|153802073|ref|ZP_01956659.1| cation efflux system protein CusA [Vibrio cholerae MZO-3]
 gi|153802457|ref|ZP_01957043.1| cation efflux system protein CusA [Vibrio cholerae MZO-3]
 gi|124122025|gb|EAY40768.1| cation efflux system protein CusA [Vibrio cholerae MZO-3]
 gi|124122372|gb|EAY41115.1| cation efflux system protein CusA [Vibrio cholerae MZO-3]
 gi|124122672|gb|EAY41415.1| cation efflux system protein CusA [Vibrio cholerae MZO-3]
          Length = 1041

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 69/591 (11%), Positives = 162/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++      + +D  P       I                  
Sbjct: 11  NNRFLVLIATLFLTLGGLYSVKM----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   E   +
Sbjct: 118 APKLPANAKPTLGPDATGVGWIYSYV-LQDKTGKHDLAQLRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 IATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    V +   + G         D    P         
Sbjct: 237 LTSIEDI------------------QSVPLKVTDKGTPLLLGDIADINIGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+      A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVEIVSTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G        T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLTFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLSEHKNPVNRGLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++     + +++     +       G  +      G  + +   
Sbjct: 519 RPLLNLSLKYPKSMIVLALGLMASAYYPTSQLGSEFIPPLDEGDLMYMPTT 569



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 67/208 (32%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           N+       IS  N +GE    V +     ++      ++    ++   +P      +  
Sbjct: 266 NIGPQMRRGISEFNGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVEIVSTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLINAAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/257 (10%), Positives = 70/257 (27%), Gaps = 15/257 (5%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             + + +     +    +        E        +   D       ++  ++ +   + L
Sbjct: 784  PNGARIALADVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGTYVQEAQQAVANQLAL 843

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                     G     E  ++ +  V+   IA+++ +            I    L +    
Sbjct: 844  PAGYALTWSGQYEYMERAKERLSVVVPITIAIIMLLLYFSFRRVGEVLIIMATLPLAMVG 903

Query: 709  G--FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR----------KNMKLYTTSIS 756
            G           ++      + L G +V   V++   +           +      +   
Sbjct: 904  GLWLMHYLNYNLSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHCKKLDAEENHQPLSMKD 963

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
              + I +     +   + T +   I ++P+      G  V+   A PM  G+  A   ++
Sbjct: 964  LTEAIREGAGLRVRPVMMTVLTVIIGLIPIMYGEGTGSEVMQRIAAPMIGGMASALLLTL 1023

Query: 814  FIAAPILLFIYDWRAKN 830
             +   I           
Sbjct: 1024 LVLPAIFKLWKSKELPK 1040


>gi|182677123|ref|YP_001831269.1| acriflavin resistance protein [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182633006|gb|ACB93780.1| acriflavin resistance protein [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 1122

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/520 (10%), Positives = 141/520 (27%), Gaps = 44/520 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L  +I   G++        ++  D FP+                  +V   
Sbjct: 9   LRRPYTFVVLSLLILMFGVMSVF-----KTPTDVFPNIKIPV-----------VSVVWTY 52

Query: 61  D---EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D     ++ Y   + S ++       +       + + F            V  
Sbjct: 53  AGLMPEDVGGRIVRYYEQAVTSTVEGIEHIESTSYYGSAIVNIYFQPGTDLGPAESDVVA 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q V  +L       +++      + +V  Q   D       +       +    +   
Sbjct: 113 ISQTVIPQLPPGISPPMIMRLEASSVPVVTMQVTSDS--RTPADLYNLAFARIRPFVVTV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
              I           L    +  +L     +   +       +         +       
Sbjct: 171 PGAIIPHPYGGKPPFLLVNLNQQQLLAHNLSGMDVENAFEKQSIVLPAGDQKIGRKDWMV 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               +                            D+   ++G          ++       
Sbjct: 231 QTNAIPMSVERFE--------------------DLPIKKVGNAFVHLRDIADVSLSGPPQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +  ++        +     + S    ++    L   L+    P     +          
Sbjct: 271 TNAVLVKGKQAVLVVVMKSGEASTLDVVQGVKDLMPRLQKLLPPDVHVQLLNDASIFVKD 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S        A  A L  +V+ + +   +  ++   SI L ++  +  L   G T+ + ++
Sbjct: 331 SIQDVVREMATAAALTGLVVLLFLGSWRATVIIATSIPLAILCAIIGLGWAGQTINVMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   ++ E I       + +  ++    ++     F + +   I    L
Sbjct: 391 GGLALAVGILVDDATVMIENIDTHLEMGKDIETAIIDAANQIVIPTFVATLCICIVWFPL 450

Query: 478 FFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
           F   G +       A  +  +++ S   + ++V  M  ++
Sbjct: 451 FTLSGVSGWLFMPMAEAIIFAMIASFILSRTLVPTMAKYL 490



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/271 (11%), Positives = 93/271 (34%), Gaps = 5/271 (1%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 ++ T+ +   ++    + +  + N  V L  +     S      +      +  
Sbjct: 223 IGRKDWMVQTNAIPMSVERFEDLPIKKVGNAFVHLRDIADVSLSGPPQTNAVLVKGKQAV 282

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            +V ++     ++   + ++ +  ++ +++P               ++ I+  +  +  +
Sbjct: 283 LVVVMKSGEASTLDVVQGVKDLMPRLQKLLPPDVHVQLLNDASIFVKDSIQDVVREMATA 342

Query: 677 AIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           A    L+ +     W   +   T++ L I   +      G   N+  +  +   +G  V+
Sbjct: 343 AALTGLVVLLFLGSWRATVIIATSIPLAILCAIIGLGWAGQTINVMTLGGLALAVGILVD 402

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           D  V+ + +                I  + N+ +  +   ++   I   P+    G    
Sbjct: 403 DATVMIENI---DTHLEMGKDIETAIIDAANQIVIPTFVATLCICIVWFPLFTLSGVSGW 459

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            F  PMA  I+ A  +S  ++  ++  +  +
Sbjct: 460 LFM-PMAEAIIFAMIASFILSRTLVPTMAKY 489



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 54/146 (36%), Gaps = 10/146 (6%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      IT L   +        L G   ++ A+   +  +G +  + +++    R+  
Sbjct: 981  SWLDPFIIITALPGALAGIAWSLFLTGTNLSIPALTGAIMCMGTATANSILIVSFARERF 1040

Query: 749  KLYTTSISFRDLIDKSINETLGRS---VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
            +++       D I  +I    GR    + T+ A  I +LPM++            +  G+
Sbjct: 1041 EIHG------DAIRAAIEAGYGRIRPVIMTASAMIIGMLPMSMSNSQN-APLGRAVIGGL 1093

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
             VA  +++     +   +Y+   +  
Sbjct: 1094 TVATFATLMFVPCVYALVYNRTNRKK 1119


>gi|315178499|gb|ADT85413.1| cation efflux system transmembrane protein [Vibrio furnissii NCTC
           11218]
          Length = 1039

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/625 (11%), Positives = 161/625 (25%), Gaps = 36/625 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L  ++  + L+ A    +  + +D  P       I                     V   
Sbjct: 14  LIVLLATVALVAAGLFSVKNTPVDAIPDLSDVQVI---------IKTSYPGQAPQVVEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  V  KL  +
Sbjct: 65  VTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQVAPKLPEN 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            K  L    T                     +           ++   +   +      +
Sbjct: 125 AKPTLGPDATGVGWVFSYV-LQDKTGQHDLAQLRSLQDWFLKYELQTVDGVSEVATVGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q   + DP++LR    T  +++      N      +  V            +    +I
Sbjct: 184 VKQYQIQIDPAKLRAYNLTLQQVNMAIKNGNQETGASVIEVAEAEHMVRTTGYLTSIGDI 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                               + +   + G         D    P        +       
Sbjct: 244 ------------------QALPLKVTKEGTPLMLGDIADISVGPQMRRGISELNGEGEAV 285

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +   +   + +  I         L+ G       +           +        A  
Sbjct: 286 GGVIVMRFGENASKVISNVKTKLEELKLGLPEGVEIVPTYDRSTLINAAVDNLWKKLAEE 345

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI + IG  VD
Sbjct: 346 FIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAIAIGAMVD 405

Query: 430 SNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
             I++ E + +   +    +++ +  +          +F S +   ++ V +F      G
Sbjct: 406 GAIVMIENVHKHIERTPLTDKNRWQIIGDAAQEVGPPLFFSLLIITLSFVPVFALEGQEG 465

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-IAIQ 541
                 A T   ++  S   A+++V  +M + IR K +             +    + I 
Sbjct: 466 KMFSPLAFTKSYAMAASAGLAVTLVPVLMGYFIRGKILPEHKNPVNRILVGLYRPLLNIS 525

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
               +   V    L +                  +G +         + +   R  L+ +
Sbjct: 526 LNYPKSMIVIAIALMASAYYPTSKLGSEFIPPLDEGDLMYMPTTFPGISVGKARELLQQM 585

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPG 626
                +          + R      
Sbjct: 586 DKLIKTVPEVKSVWGKVGRADTATD 610



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 85/250 (34%), Gaps = 14/250 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D+SV       +   +   +   G              S  +T++ E+       + 
Sbjct: 261 DIADISVGPQMRRGISELNGEGEAVGGVIVMRFGENASKVISNVKTKLEELKLGLPEGVE 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            + T   + ++   +     +     ++++ +  L      F    +L    +L + I  
Sbjct: 321 IVPTYDRSTLINAAVDNLWKKLAEEFIVVAIVCAL----FLFHIRSSLVIALSLPVGILS 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LI 761
                   GI  N+ ++  +   IG  V+  +V+     +N+  +       D     +I
Sbjct: 377 AFIVMHWQGINANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQII 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             +  E      ++ +   +S +P+    G     F+ P+AF    A ++S  +A  ++ 
Sbjct: 433 GDAAQEVGPPLFFSLLIITLSFVPVFALEGQEGKMFS-PLAFTKSYAMAASAGLAVTLVP 491

Query: 822 FIYDWRAKNA 831
            +  +  +  
Sbjct: 492 VLMGYFIRGK 501


>gi|266620107|ref|ZP_06113042.1| putative acriflavine resistance protein [Clostridium hathewayi DSM
           13479]
 gi|288868335|gb|EFD00634.1| putative acriflavine resistance protein [Clostridium hathewayi DSM
           13479]
          Length = 1012

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/619 (11%), Positives = 178/619 (28%), Gaps = 47/619 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V+    +   GL     + +  +    FP  M                 V   
Sbjct: 8   LKRPITTVLAVLCLLVFGLSSVFSSKMELTPEMNFPMMM--------------ITAVYAG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D VN  +    +E    L          ++  + + + +      +     +   + 
Sbjct: 54  ASPDDVNELVTKPIEESVGTLSGVKNIQSMSQENISIVMMEYEYGTDMDKAYSDLKKKMD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   +  D +   +      ++  +    N       A      +  + + +     S 
Sbjct: 114 NIT--MPDDVEVPSIFEFNMNDMPSMTLSVNDP----SADNLYNYVNDEIVPEFEKISSV 167

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +     P ++ Q   T   +S      + +      GV          
Sbjct: 168 ASVDLSGGQEGYISVRLIPEKMNQYHLTMNSISQAIKSADFTYPAGSTGV---------- 217

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G      + +    T   +  I       +  +     +I +        
Sbjct: 218 ----------GKQDLSVSTSVKFDTVDSLKRIPVVAGSGKTIYLEDVADISETTGKDTSI 267

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        + + + S     ++       L+A    +++ +           +  
Sbjct: 268 GRYNGEDTMSLSINKQQKSSAVDVSKSVNRTIETLKAEHPQLEVIV-VNDTSDQITSALK 326

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   + +I++F+     K  L+   SI ++++  L L+S++G +L + ++  +
Sbjct: 327 SVTTTMVMAVIISMIIIFLFFGDIKASLIVGSSIPVSILAALILMSVMGFSLNVVTMGSL 386

Query: 421 VLGIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           VLG+G+ VD++I+V E     ++    +    +   G  +   +IF   +T  +  + L 
Sbjct: 387 VLGVGMMVDNSIVVLESCFRSHKGQGFREYMEAALEGTGKVIQSIFGGTVTTCVVFIPLA 446

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G        T+   +  S+ +A++IV          +K  S     +       
Sbjct: 447 LLKGMSGQMFAPLGFTIVFCMAASLISAMTIVPLCYSRFRPVEKKNSPASGLVRMMQNGY 506

Query: 536 D-CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              I     + +       +L  +  +              +G I + V     + +  V
Sbjct: 507 RKIIGRLLNKRKTVMGVSILLLVLSFLIAGRLGFALMPDVDQGTIAVTVEVRPGLQIEEV 566

Query: 595 RSNLESLQIGDISFQNFDG 613
              +  ++   +   +   
Sbjct: 567 DKIISRVEKIIMDEPDRKS 585



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 94/242 (38%), Gaps = 8/242 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V L+ +   + +     I+ +N   +         +      Q  VL+ + 
Sbjct: 758 TIPTQTGGSVALTDIADIVYADSPAGITRKNKQYQVTITGSFTDEVSTKERQAAVLKDIN 817

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAIT 698
           +++       T+   +    +   E        + I+   + + +  +F+   F+L  +T
Sbjct: 818 EQVVSKYLNGTVTRAQNSIDESMYEEFGSLFKAIAIAIFLVFVVMAAQFESPKFSLMVMT 877

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+   +  + G  A   +E ++ ++   L LIG  VN  ++  D     +  Y +++  R
Sbjct: 878 TIPFSLIGSFGLLAAMDVEISMPSLLGFLMLIGTVVNAGILYVD----TVNQYRSTMDKR 933

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFI 815
             + ++    L   + T++   +S++P+A+     G ++   A+    G+  +   S+ +
Sbjct: 934 TAMIEAGATRLRPILMTTLTTIVSMIPLAIGYGSNGELMQGLALVNVGGLTASTVLSLLM 993

Query: 816 AA 817
             
Sbjct: 994 LP 995



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 106/311 (34%), Gaps = 8/311 (2%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           I      + +      Q +++  +               + T      +D    I +   
Sbjct: 185 IPEKMNQYHLTMNSISQAIKSADFTYPAGSTGVGKQDLSVSTSVKFDTVDSLKRIPVVAG 244

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           + + + L  V    E+        +    +   L   + Q   +V  ++ +    + +  
Sbjct: 245 SGKTIYLEDVADISETTGKDTSIGRYNGEDTMSLSINKQQKSSAVDVSKSVNRTIETLKA 304

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             P   +        +I+  L       V+   I+M+I          +L   +++ + I
Sbjct: 305 EHPQLEVIVVNDTSDQITSALKSVTTTMVMAVIISMIIIFLFFGDIKASLIVGSSIPVSI 364

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              L   ++ G   N+  + +++  +G  V++ +VV     ++         FR+ ++ +
Sbjct: 365 LAALILMSVMGFSLNVVTMGSLVLGVGMMVDNSIVVL----ESCFRSHKGQGFREYMEAA 420

Query: 765 INETLG---RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
           +  T          ++   +  +P+A+  G     FA P+ F IV   ++S+  A  I+ 
Sbjct: 421 LEGTGKVIQSIFGGTVTTCVVFIPLALLKGMSGQMFA-PLGFTIVFCMAASLISAMTIVP 479

Query: 822 FIYDWRAKNAR 832
             Y       +
Sbjct: 480 LCYSRFRPVEK 490


>gi|254284891|ref|ZP_04959857.1| heavy metal efflux pump CzcA [Vibrio cholerae AM-19226]
 gi|150424894|gb|EDN16671.1| heavy metal efflux pump CzcA [Vibrio cholerae AM-19226]
          Length = 1041

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/591 (11%), Positives = 163/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++      + +D  P       I                  
Sbjct: 11  NNRFLVLIATLFLTLGGLYSVKM----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   E   +
Sbjct: 118 APKLPANAKPTLGPDATGVGWIYSYV-LQDKTGKHDLAQLRSLQDWFLKYELQTMEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 IATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    V +   + G         D    P         
Sbjct: 237 LTSIEDI------------------QSVPLKVTDKGTPLLLGDIADINIGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+      A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVEIVSTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLSEHKNPVNRGLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++     + +++     +       G  +      G  + +   
Sbjct: 519 RPLLNLSLKYPKSMIVLALGLMASAYYPTSQLGSEFIPPLDEGDLMYMPTT 569



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 71/250 (28%), Gaps = 16/250 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++  ++  D               +          T V E  K    ++V  +    T 
Sbjct: 792  ADVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGTYVQEAQKTVAEQLVLPAGYALTW 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FAL 713
                +       +  V V I+   +++ ++  F+       I    L +    G      
Sbjct: 852  SGQYEYMERAKERLSVVVPITLAIIMLLLYFSFR-RVGEVLIIMATLPLAMVGGLWLMHY 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR----------KNMKLYTTSISFRDLIDK 763
                 ++      + L G +V   V++   +           +      +     + I +
Sbjct: 911  LNYNLSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHYKKLDAEENHQPLSMKDLTEAIRE 970

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                 +   + T +   I ++P+      G  V+   A PM  G+  A   ++ +   I 
Sbjct: 971  GAGLRVRPVMMTVLTVIIGLIPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIF 1030

Query: 821  LFIYDWRAKN 830
                      
Sbjct: 1031 KLWKSKELPK 1040



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 71/217 (32%), Gaps = 13/217 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D+++       +   +   +   G                 + ++ E+ +     + 
Sbjct: 261 DIADINIGPQMRRGISEFNGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVE 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            +ST   + ++   +     +     ++++ +  L      F    +L    +L + I  
Sbjct: 321 IVSTYDRSTLINAAVENLWKKLAEEFIVVAIVCAL----FLFHIRSSLVIALSLPVGILS 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LI 761
                   GI  N+ ++  +   IG  V+  +V+     +N+  +       D     +I
Sbjct: 377 AFIVMHWQGINANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVI 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            K+  E      ++ +   +S +P+    G     F+
Sbjct: 433 GKAAEEVGAPLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|45657384|ref|YP_001470.1| heavy metal efflux pump [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45600623|gb|AAS70107.1| heavy metal efflux pump [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 1080

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/682 (10%), Positives = 186/682 (27%), Gaps = 49/682 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + ++ +L  ++  IG   A+     +   + FP+                   V   
Sbjct: 9   LSKSIFVNLLTFLVILIGGFTAV-----KMNREAFPNINFDIV---------SVVTVFPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF-ADSRFKENIADKVTLFL 119
                +   +    +E    +        +  + ++ I ++   DS+  + + D +   +
Sbjct: 55  ASPSEMEKLVTKPLEEAIQEVDGIKEFRSASIENRSGIVITLDPDSKNTQKVVDDIKSAI 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID--QVISHAIEQSMEIIRQRIDQIGIS 177
             V   L  + +  ++   T     ++    ++        A +      +     +   
Sbjct: 115 DRVE-DLPEEAEDPIVTEITTSRQPVIEINISLKLNDSSIEAEKHLKAQAKIVEQALEDI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +         ++  + DP  +     T+  + F     N +  G            
Sbjct: 174 PGVARISKRGWRDTEMQVDIDPVAMFSKYLTSQDIIFALKNRNINFPGGNIAGNQKEVIL 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                     EI  +H+                                   + + L   
Sbjct: 234 RTIGEFNSPKEIETVHVRSNEV-------------------GNSIRIDNVARVTEGLKEA 274

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +            + +      ++ A  +    +  S                  
Sbjct: 275 EYLDKVNGKKTIALTVIKREKADAILVVDEAKKIIEEFKKNSKNEFEYAFVNDLSKYIRR 334

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
              +          LV   LF+ +   +  L+    I ++   T  ++  LG TL L S+
Sbjct: 335 RLGVLLSNAIGGLILVTASLFLFL-GWRVALMTALGIPVSFGATFVIMDYLGLTLNLISM 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+++ +G+ VD  I++ E +     +    + +   G S     +  +  T + A   +
Sbjct: 394 FGLIIVVGILVDDAIIICENVYRYMEEGMPAYEAALKGTSEVIDPVTATVTTTVAAFAPM 453

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM----KSIDINPLSR 530
            F  G   +      + + +++L S+  A  I+ + +  I ++K      K         
Sbjct: 454 LFMTGIFGKFIYSIPLVVIIALLASLSEAFFILPSHLYDINKHKFHSGEIKEESGWFYKL 513

Query: 531 FFLIPDCIAIQFMRAR-FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                  +    ++ R    + +  +                        Q+ +     +
Sbjct: 514 KVNYYLPLLKFALKHRLQIFIYLFAMLVGSFALFAVFGRFKLFPGSVDVFQIKLTGQTGI 573

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L  +     +L+         + E         Q   +   T+  +   + +  + P  
Sbjct: 574 SLQEMEKFTHALETELAKISKEEIENYVTRVGIIQKDPNDPFTKRGKHYAQVLVYMTPEE 633

Query: 650 TIQNTEIVGPKISRELIRKGIV 671
             +        I  E+  K I 
Sbjct: 634 NRKRGT---DTIISEIREKTIW 652



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 86/254 (33%), Gaps = 9/254 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V +N   +   + +     +    +           + L     +      V++  K
Sbjct: 247 TVHVRSNEVGNSIRIDNVARVTEGLKEAEYLDKVNGKKTIALTVIKREKADAILVVDEAK 306

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV---IISAIAMLIYIWIRFKWYFALGA 696
           K I E    S  +        +S+ + R+  V +   I   I +   +++   W  AL  
Sbjct: 307 KIIEEFKKNSKNEFEYAFVNDLSKYIRRRLGVLLSNAIGGLILVTASLFLFLGWRVALMT 366

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              + +    T       G+  NL ++  ++ ++G  V+D +++ + +    +     + 
Sbjct: 367 ALGIPVSFGATFVIMDYLGLTLNLISMFGLIIVVGILVDDAIIICENV---YRYMEEGMP 423

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSI 813
             +   K  +E +     T      +  PM       G  I S  + +   ++ + S + 
Sbjct: 424 AYEAALKGTSEVIDPVTATVTTTVAAFAPMLFMTGIFGKFIYSIPLVVIIALLASLSEAF 483

Query: 814 FIAAPILLFIYDWR 827
           FI    L  I   +
Sbjct: 484 FILPSHLYDINKHK 497



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 80/231 (34%), Gaps = 5/231 (2%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
            +  + DG++   V        +  +    E+ K     I      +       K + E +
Sbjct: 845  NINHLDGKRLLTVTANLDEIKTDTRRANAEIAKLSKGIIDKYPGYRMRFGGENKDTEESL 904

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                   +++ I + + +   F+     +  ++++   +   +  F L G  F   A   
Sbjct: 905  ASLGRAFLVAFIIIFMILASLFRSLIQPVIVVSSIPFSLIGVILAFVLHGEYFGFLAFLG 964

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL-IDKSINETLGRSVYTSMAAFISVL 784
            ++ L G  VND +V+ D     +KL         + ++  +       + T       + 
Sbjct: 965  IVGLAGVVVNDSIVLVD-FANQLKLEKPGEDIDSILVETGLLRLRPVVLTTVTTVLGLLP 1023

Query: 785  PMAVWGG--SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                 GG    +   A+   +G+  ++  ++     +   +++ + K  R+
Sbjct: 1024 TAYGIGGKDPFLVPMALAFGWGLAFSSFLTLVAVPVLYKTVHNVQLKINRV 1074


>gi|312147741|gb|ADQ30400.1| protein-export membrane protein SecD [Borrelia burgdorferi JD1]
          Length = 586

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 88/211 (41%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +      +  K         I +  I+GP +    I  GI    ++   
Sbjct: 365 NVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++   +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFMCFYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRR---FENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 572



 Score =  115 bits (287), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 130/490 (26%), Positives = 218/490 (44%), Gaps = 47/490 (9%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              I LGLDL GG  + + +D         +                            L
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRS---------------------------L 165

Query: 101 SFADSRF-KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +FA+       I   +   +              ++      +I + +     +  +S  
Sbjct: 166 TFAEREDAIYRIMQILKDRVDRFGLTEPK-----IVREAGGNKIFLDIPGEKDESRVSTL 220

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           +     +    +D    S    + L +  +         P     +    +K  F   + 
Sbjct: 221 LSGKGNLTFYVVDDESTSLLHRKILEAGSLFSI------PEIQASMNLPDSKQIFPWYVK 274

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
           ++        VR+             +    G H+  A  + DP+T +  V  S D  G+
Sbjct: 275 DSYGVDDESSVRYY------VVDASPENSFDGAHIKDAGVSNDPRTGRDTVAFSLDVDGS 328

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGILAAMLRAG 338
            +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + A  LA + +  
Sbjct: 329 EKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEAQDLALVFKTA 388

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL-N 397
           + P+ + I + R +G  LG+ +I  G  A    L L+ LFM   YG  G+VA FS+ + N
Sbjct: 389 AFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCLVFLFMCFYYGLSGVVAGFSLVIYN 448

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           V L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +    + + GF 
Sbjct: 449 VFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREGRRFENAFEDGFK 508

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++   R ++ FII  
Sbjct: 509 KAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRFILEFIISV 568

Query: 518 KKMKSIDINP 527
           +K K I I+ 
Sbjct: 569 RKSKFISISW 578


>gi|229522944|ref|ZP_04412358.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio cholerae TM
           11079-80]
 gi|229340161|gb|EEO05169.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio cholerae TM
           11079-80]
          Length = 1041

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/591 (11%), Positives = 163/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++      + +D  P       I                  
Sbjct: 11  NNRFLVLIATLFLTLGGLYSVKM----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   E   +
Sbjct: 118 APKLPANAKPTLGPDATGVGWIYSYV-LQDKTGKHDLAQLRSLQDWFLKYELQTMEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 IATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    V +   + G         D    P         
Sbjct: 237 LTSIEDI------------------QSVPLKVTDKGTPLLLGDIADINIGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+      A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVEIVSTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPIGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLSEHKNPVNRGLVALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++     + +++     +       G  +      G  + +   
Sbjct: 519 RPLLNLSLKYPKSMIVLALGLMASAYYPTRQLGSEFIPPLDEGDLMYMPTT 569



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/251 (11%), Positives = 71/251 (28%), Gaps = 16/251 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++  ++  D               +          T V E  K    ++V  +    T 
Sbjct: 792  ADVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGTYVQEAQKTVAEQLVLPAGYALTW 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FAL 713
                +       +  V V I+   +++ ++  F+       I    L +    G      
Sbjct: 852  SGQYEYMERAKERLSVVVPITLAIIMLLLYFSFR-RVGEVLIIMATLPLAMVGGLWLMHY 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR----------KNMKLYTTSISFRDLIDK 763
                 ++      + L G +V   V++   +           +      +     + I +
Sbjct: 911  LNYNLSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHYKKLDAEENHQPLSMKDLTEAIRE 970

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                 +   + T +   I ++P+      G  V+   A PM  G+  A   ++ +   I 
Sbjct: 971  GAGLRVRPVMMTVLTVIIGLIPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIF 1030

Query: 821  LFIYDWRAKNA 831
                       
Sbjct: 1031 KLWKSKELPKR 1041



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/208 (14%), Positives = 67/208 (32%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           N+       IS  N +GE    V +     ++      ++    ++   +P      +  
Sbjct: 266 NIGPQMRRGISEFNGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVEIVSTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLINAAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPIGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|160873777|ref|YP_001553093.1| acriflavin resistance protein [Shewanella baltica OS195]
 gi|160859299|gb|ABX47833.1| acriflavin resistance protein [Shewanella baltica OS195]
 gi|315266003|gb|ADT92856.1| acriflavin resistance protein [Shewanella baltica OS678]
          Length = 1025

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/625 (12%), Positives = 175/625 (28%), Gaps = 45/625 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+  +  +L  M   +GL+        +  +  FP     +            +  +   
Sbjct: 9   RHPIFASVLSIMAVLLGLIA-----FQKLDIQYFPEHTTHSA---------SVNASIAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR-FKE--NIADKVTLF 118
             DF++  +        S + K         + +  +T+ F D     E  N+ +K+   
Sbjct: 55  SADFMSSNVADKLIAAASGIDKVDTMSTDCSEGRCSLTIKFNDDTSDIEYTNLMNKLRSS 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++G+N        K  +   T    S       ++            I +Q + Q+   +
Sbjct: 115 VEGINDFPQSMIDKPTVTDDTSATDSASNIITFVNAGGMEKQAMYDYISQQLVPQLKQVQ 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +++ L    A +       N S        +    S 
Sbjct: 175 GVGAVWGPYGGSQKAVRVWLNPEQMKALNIKAADVVGTLGSYNASFTSGAIKGKSRDFSI 234

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                VE   ++  + +                       G         D +    ++ 
Sbjct: 235 NPLNQVETLEDVKDLVIKV-------------------SEGKIIRVADVADVVMGEESLS 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +             +  +            A ++          +          
Sbjct: 276 PSILSIGGHSAMSLQILPLSNANPVTVASNIKAEIARMQQHLPQGLEMTLAYNQADFIEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S             LV +++ + +   +   +   +I + VI   A++S LG ++ + +I
Sbjct: 336 SIDEGFSALIEAVILVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMSALGFSINVLTI 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E         ++ F +   G       I    +T     + +
Sbjct: 396 LAIILAIGLVVDDAIVVVENCYRHIENGETPFNAAIKGCQEIIFPIIAMTLTLAAVYLPI 455

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
               G      R F+ T+  +++IS   A+++   M  ++      + K    ++     
Sbjct: 456 GLMSGLTADLFRQFSFTLAAAVMISGVVALTLSPMMSAYLINTTEQQPKWFSRVEHALQQ 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L    +   F R R       +L  +  I       +    +  G I +       V
Sbjct: 516 LNDLYIKELDKWFTRKRLMLGAAVVLIGLAGIAYWQLPKILLPAEDSGFIDVASNGPTGV 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614
                 ++   L             
Sbjct: 576 GRQYHLNHNAELNGVMDEHPAVGAN 600



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 91/258 (35%), Gaps = 8/258 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMV 638
            + V   + + ++ V   +   +    S  +  G     +++      + V     ++  
Sbjct: 250 VIKVSEGKIIRVADVADVVMGEESLSPSILSIGGHSAMSLQILPLSNANPVTVASNIKAE 309

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAI 697
             ++ + +P                  I +G   +I + I + LI +        A   I
Sbjct: 310 IARMQQHLPQGLEMTLAYNQADFIEASIDEGFSALIEAVILVSLIVVLFLGSLRAASIPI 369

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ + +       +  G   N+  + A++  IG  V+D +VV +      +      + 
Sbjct: 370 ITIPVCVIGVFAVMSALGFSINVLTILAIILAIGLVVDDAIVVVENC---YRHIENGETP 426

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +   K   E +   +  ++      LP+ +  G    +   F+  +A  ++++   ++ 
Sbjct: 427 FNAAIKGCQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVMISGVVALT 486

Query: 815 IAAPILLFIYDWRAKNAR 832
           ++  +  ++ +   +  +
Sbjct: 487 LSPMMSAYLINTTEQQPK 504



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 10/289 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       FT+ +   ++        VL    V     ++   S  +     
Sbjct: 730  TFLGSVKAADLHATDGFTYPIQVQVNLDKLSDFKVLNKLYVTSESGQALPLSQFVSIKQT 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  K F+     +    V      + +K  + E +P             + ++L+  
Sbjct: 790  TAESNIKTFMGLDSAELTADVMPGYSTDEIKAYLDEQLPTLLNDAQGFKYNGVVKDLMDS 849

Query: 669  --GIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              G   + +++ + + + +  +F+ +   L  + T+ L I   L    LFG   N+ +  
Sbjct: 850  QAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCIVGALLTLTLFGQSVNIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +      K     +S  +    S    L   + TS+   +S +
Sbjct: 910  GLLTLVGLVTKHGILLVEFAN---KQQDQGLSAIEAARSSAKSRLRPILMTSLTMILSAI 966

Query: 785  PMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+A+  G     + +  + +  G++     S+F+     + + + +AK+
Sbjct: 967  PLALASGPGSLGLANIGLVLVGGLLAGTFFSLFVVPVAYVAMAELKAKD 1015


>gi|149374333|ref|ZP_01892107.1| Heavy metal efflux pump CzcA [Marinobacter algicola DG893]
 gi|149361036|gb|EDM49486.1| Heavy metal efflux pump CzcA [Marinobacter algicola DG893]
          Length = 1065

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 76/647 (11%), Positives = 181/647 (27%), Gaps = 44/647 (6%)

Query: 54  SHLVLEVDED------DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF 107
           +++ + V+ +      + V   +    + +   L          +   + +T+ F +   
Sbjct: 43  TNVQVAVNTEAPGLAAEEVEQLITYPIEAVMYALPDVEEVRSISKTGLSGVTVVFKEGTD 102

Query: 108 KENIADKVTLFLQGVNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
                  V   LQ     +        +   T+                   A+E     
Sbjct: 103 IYFARQLVFERLQAARELIPDGVGVPEMGPNTSGLGQVYQYLLIADPDSGYDAMELRSLH 162

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
                  +  +E   + L     + Q     +P+R+     +   +       N++  G+
Sbjct: 163 DWLVKLLLIPAEGVTEILSFGGEVRQYQVNLNPARMLSYDLSQNDVMDALENNNSNVGGW 222

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
             G          Q ++     +             P      + ++  ++         
Sbjct: 223 YMG------RGQEQLVIRGMGWLGNGEQGLEQIGQVPVKTSDGITVTVSDVAQVALGTEI 276

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
           R           DG+V     +   I   +   +   TI+        +           
Sbjct: 277 RQGAVTMTRKDEDGQVEQLGEVVSGIVLKRMGANTKATIDGIEARIDRINQALPSGVRFE 336

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
                      +         +    + IVL + ++  +   +   SI +++ + L +++
Sbjct: 337 PYYNQADLVTKAVETVTNALLLAFVFIAIVLALFLMNLRATTLVLLSIPISIGIALMIMA 396

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS--------------- 451
             G +  L S+ GI + IG+ VD ++++ E + +      +   +               
Sbjct: 397 WFGLSANLMSLGGIAVAIGMLVDGSVVMVENMFKHLTHPDAEHDAHRDELVENDPDPLDA 456

Query: 452 ----------LDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILI 498
                     L          IF +    L+  + LF F G      +  AI++ L+I+ 
Sbjct: 457 SHDDHGIALRLQEAGREVARPIFFATAIILVVFMPLFSFEGVEAKLFQPMAISIMLAIVS 516

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           ++  A+ +V A+  F+ R    +           L    +       R      ++L  +
Sbjct: 517 AVIVALVVVPALASFLFRKGIRERESFVLKPLEKLYRKGLDWSLKHTRSVVGAAAVLVVL 576

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            ++ +            +G I L V        S + + LE     +     F      L
Sbjct: 577 AALVVPRLGTEFVPELEEGTINLRVTL---APSSSLDTALEVAPKLEAMLMEFPEVTYAL 633

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            R          +      +   +      ++  N   +      +L
Sbjct: 634 SRAGRAEIGGDPEPVNNIEIYIGLKPTSEWTSASNRYELQALFEEKL 680



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 83/234 (35%), Gaps = 9/234 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++  + I     Q    +    V +Q         + V ++     +E+           
Sbjct: 828  DVADVSIESGPPQVRRDDVQRRVVIQSNVQGRDMGSVVADIQDTITSEVNLPPGYSVDIG 887

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--F 714
               +  +   ++  + V +S   + + ++  F        +  + + +    G F+L   
Sbjct: 888  GQFENQQRAQKRLTIVVPVSLGLIALLLYFAFS-SVGQALLILVNVPLAVIGGVFSLWIS 946

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ +    +TL G +V + VV+ + +    +     +S    + +     L   + 
Sbjct: 947  GQYLSVPSSVGFITLFGVAVLNGVVMVESIN---QRIQDGLSVDAAVFEGAVSRLRPVLM 1003

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T++ + + ++PM +    G  +    A  +  G+V A   ++F+   +      
Sbjct: 1004 TAITSALGLIPMLLSTGVGAEIQKPLASVIVGGLVTATFLTLFVLPALFTRFSR 1057



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/319 (10%), Positives = 93/319 (29%), Gaps = 26/319 (8%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +            L     +         + +  +A   +   + +  +
Sbjct: 222 WYMGRGQEQLVIRGMGWLGNGEQGLEQIGQVPVKTSDGITVTVSDVAQVALGTEIRQGAV 281

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
              +  +       GE    + L+    ++ A    +E    +I + +P           
Sbjct: 282 TMTRKDEDGQVEQLGEVVSGIVLKRMGANTKATIDGIEARIDRINQALPSGVRFEPYYNQ 341

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE 717
             +  + +      ++++ + + I + +           + ++ + I   L   A FG+ 
Sbjct: 342 ADLVTKAVETVTNALLLAFVFIAIVLALFLMNLRATTLVLLSIPISIGIALMIMAWFGLS 401

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRM--------------RKNMKLYTT--------SI 755
            NL ++  +   IG  V+  VV+ + M              R  +               
Sbjct: 402 ANLMSLGGIAVAIGMLVDGSVVMVENMFKHLTHPDAEHDAHRDELVENDPDPLDASHDDH 461

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSS 812
                + ++  E      + +    +  +P+  + G    +    AI +   IV A   +
Sbjct: 462 GIALRLQEAGREVARPIFFATAIILVVFMPLFSFEGVEAKLFQPMAISIMLAIVSAVIVA 521

Query: 813 IFIAAPILLFIYDWRAKNA 831
           + +   +  F++    +  
Sbjct: 522 LVVVPALASFLFRKGIRER 540


>gi|121594215|ref|YP_986111.1| CzcA family heavy metal efflux protein [Acidovorax sp. JS42]
 gi|120606295|gb|ABM42035.1| heavy metal efflux pump, CzcA family [Acidovorax sp. JS42]
          Length = 1062

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/596 (9%), Positives = 150/596 (25%), Gaps = 62/596 (10%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  +G++        +  +D  P                 +++ ++++          
Sbjct: 16  VLLAALGMVALGVFSYQKLPIDAVPDI---------------TNVQVQINTQAAGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
               +    + + + L          R   +++T+ F D          V   +Q    K
Sbjct: 61  TEQRVTYPIETVMAGLPNLEQTRSLSRYGLSQVTVIFKDGTDIYFARQLVNERIQEARDK 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQIGISES 179
           L       L   +T      + +    D           A +           Q+     
Sbjct: 121 LPAGITPALGPISTGLGEIYLWTVETKDGAKKPDGSPYTATDLREIQDWIIKPQLRNVPG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         +      P RL  L  T   +       N +        R  +     
Sbjct: 181 VTEINSIGGFAKEYQIAPIPERLASLGVTLQDVVTALDRNNGNVGAGYIEKRGEQYLIRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+   +I                     ++                 +G    +   
Sbjct: 241 PGQVKSLEDIG--------------------NVILSSANGVPVRVRDVAEVGIGRELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +        +          +           + 
Sbjct: 281 AATDNGREVVLGTVFMLIGENSRTVSQAVDKKMLEVNKSLPEGVHAVTVYDRTVLVDKAI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S  K      A LV+++LF+ +   +  ++    I L+++ T   +     +  L S+  
Sbjct: 341 STVKKNLLEGAVLVIVILFLFLGNIRAAVITAMVIPLSMLFTFTGMVQYKVSANLMSLGA 400

Query: 420 IVLGIGLAVDSNILVNERI-----REENRKNQSVFCS-----LDMGFSRAYSTIFDSNIT 469
           +  GI   +D  +++ E         +    + +  +     + +    +   +    + 
Sbjct: 401 LDFGII--IDGAVVIVENCVRRLAHAQAHHGRPLTRAERFHEVFLASQESRRPLLFGQLI 458

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++  + +F      G      A T+  ++L +M  +++ V A +   I  +  +  +  
Sbjct: 459 IMVVYLPIFALTGVEGKMFHPMAFTVVAALLGAMILSVTFVPAAVALFIGNRVSEKENFL 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                 L    +              ++   +C +              +G   + 
Sbjct: 519 LGHAKRLYGPLLDRVMAAKAVVLTAAAVAVVLCGLIATRMGSEFVPNLNEGDFAIQ 574



 Score = 42.8 bits (98), Expect = 0.28,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 18/247 (7%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++  + IG         +    V L          +R +     K    V  S  +   
Sbjct: 266 RDVAEVGIGRELRTGAATDNGREVVLGTVFMLIGENSRTVSQAVDKKMLEVNKSLPEGVH 325

Query: 656 IVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V       L+ K I  V       + + ++I          A+     + L +  T   
Sbjct: 326 AVTVYDRTVLVDKAISTVKKNLLEGAVLVIVILFLFLGNIRAAVITAMVIPLSMLFTFTG 385

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTTSISFRDL-----IDK 763
              + +  NL ++ A+    G  ++  VV+ +    R                    +  
Sbjct: 386 MVQYKVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQAHHGRPLTRAERFHEVFL 443

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPI 819
           +  E+    ++  +   +  LP+    G    +    A  +   ++ A   S+ F+ A +
Sbjct: 444 ASQESRRPLLFGQLIIMVVYLPIFALTGVEGKMFHPMAFTVVAALLGAMILSVTFVPAAV 503

Query: 820 LLFIYDW 826
            LFI + 
Sbjct: 504 ALFIGNR 510



 Score = 39.3 bits (89), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+   I  +++A    + L G +V + +V+   +R    L    +   + I
Sbjct: 917  FALTGGILALWLRDIPMSISAAVGFIALSGVAVLNGLVMISYIR---SLREGGVGLDEAI 973

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                   L   + T++ A +  +PMA+    G  V    A  +  G
Sbjct: 974  RDGALTRLRPVLMTALVASLGFIPMAIATGTGAEVQRPLATVVIGG 1019


>gi|154244688|ref|YP_001415646.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
 gi|154158773|gb|ABS65989.1| acriflavin resistance protein [Xanthobacter autotrophicus Py2]
          Length = 1054

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/526 (13%), Positives = 141/526 (26%), Gaps = 38/526 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    + +L + +  +G+            +   P                     L   
Sbjct: 9   RRPVAITLLMAALALVGM-----TSFFLLPVAPLPQVDFPTIQ---------VTATLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +                IT+ F   R  +  A  V   +  
Sbjct: 55  SAETMASSVATPLERQIGQIAGVTQMTSFSALGATSITIQFDLDRNIDAAAQDVQAAISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +  L                 + +L   ++          S         QI   +   
Sbjct: 115 ASRNLPESMTSPPTYRKLNPAEAPILI-LSVSSETLPLTAVSEYADNFLAQQISQVQGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  + DP +L     T  ++    V    +             +     
Sbjct: 174 QVSIGGEQKPSIRVQLDPGKLAARGLTFEEVRGALVNTTTNAPKGSLTTPKASFA----- 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            AN      +   D                       +      
Sbjct: 229 ---------------FVANDQITEAEQFEDAIIAYRDGAPVRVRDVGRAVSAASDRNTAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +   T++        L A   P                S   
Sbjct: 274 HYNNVQGILLSVNKQPGANVIETVDQIKAQLPKLTANLPPAITVETVLDRTVTIRASVHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+ + +      L+A  ++ L +I + A + LLG +L   S+  + 
Sbjct: 334 VEFTLVLTVALVVLVVLLFLRNVWATLIASITVVLALIGSFAAMYLLGFSLNNVSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E I     + QS F +   G      TI   +++ +   + L   G
Sbjct: 394 IAIGFVVDDAIVVVENIYRHMEEGQSPFEAALAGSRDIAFTIVSISVSLVAVFIPLLLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              G   R FA+T+  SIL+S+  ++++V  +    +     +   
Sbjct: 454 GIVGRLFREFALTVTASILVSVIVSLTLVPMLCSRFMWPNTGQHRR 499



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 6/129 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L A  T++L +  +     L G   N  ++ A+   IG+ V+D +VV + +    +    
Sbjct: 360 LIASITVVLALIGSFAAMYLLGFSLNNVSLMALTIAIGFVVDDAIVVVENI---YRHMEE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             S  +       +     V  S++     +P+ + GG V      FA+ +   I+V+  
Sbjct: 417 GQSPFEAALAGSRDIAFTIVSISVSLVAVFIPLLLMGGIVGRLFREFALTVTASILVSVI 476

Query: 811 SSIFIAAPI 819
            S+ +   +
Sbjct: 477 VSLTLVPML 485



 Score = 41.6 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 25/199 (12%), Positives = 82/199 (41%), Gaps = 6/199 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
            + ++ +++   +I     +  T     +  ++ +    + +I + + + I + I ++ + 
Sbjct: 825  QAVDAIRQSALDIGMPGAVTGTFQGNAQAFQDSLSSTPILIIAALVVVYIVLGILYESFV 884

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  ++TL       L       ++ ++  + A++ LIG    + +++ D     +   
Sbjct: 885  HPLTILSTLPSAGIGALLALQFGHMDLSVIGIIALILLIGIVKKNGIMLVD--FAIVAER 942

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +     I ++        + T+ AA ++ +P+A+    G  +       M  G+V++
Sbjct: 943  DRHLPPVVAIREACLLRFRPILMTTAAALLAGVPLALGTGTGSELRQPLGYAMVGGLVLS 1002

Query: 809  ASSSIFIAAPILLFIYDWR 827
               +++    + L++  ++
Sbjct: 1003 QLLTLYTTPIVYLYLDRFQ 1021


>gi|307266560|ref|ZP_07548092.1| protein-export membrane protein SecD [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|326390123|ref|ZP_08211684.1| protein-export membrane protein SecD [Thermoanaerobacter
           ethanolicus JW 200]
 gi|306918414|gb|EFN48656.1| protein-export membrane protein SecD [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|325993771|gb|EGD52202.1| protein-export membrane protein SecD [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 411

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 123/383 (32%), Positives = 217/383 (56%), Gaps = 29/383 (7%)

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           + + +     V   AI +++ +IR R+D +G+++  I + GS+RI ++LPG  DP R  +
Sbjct: 51  VYVLEEAQGNVTQDAINKAIAVIRNRVDALGVTQPVISQQGSNRIRVELPGMNDPDRAIE 110

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA++ F                             + +V ++G ++  + A +   
Sbjct: 111 IIGKTAQLKF--------------------------VGPDGQVILTGANVKDSKAVYAQT 144

Query: 265 T---HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +P V +  D  G ++F E T+  + +P+A+VLD +V++AP +   I +G A I+G
Sbjct: 145 QTGIQQPEVTLVLDAEGTKKFAEATQKFLNQPIAIVLDDKVISAPTVQSVITNGNAVITG 204

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               + A  LA ++RAGSLP+ L  +   +VGA LG  ++     A + G +L++LFMI 
Sbjct: 205 LKDFQEASELATLIRAGSLPVTLKPIAYSSVGATLGPSALNASLKAGIYGTLLVMLFMIA 264

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   G VAD ++ + +++   + +L   TL LP IAG +L IG+AVD+NIL+ ER +EE
Sbjct: 265 FYRLPGFVADLALLIYILINFIVYALFNITLDLPGIAGFLLSIGMAVDTNILIFERFKEE 324

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
               +S+  +LD GF++A+  +FD+NIT +I  ++LF+ G G V+GFA+T+ + +  S+F
Sbjct: 325 LWAGKSIRPALDAGFAKAFRAVFDANITTIIGAIILFYLGSGNVKGFALTLLIGVTSSLF 384

Query: 502 TAISIVRAMMIFIIRYKKMKSID 524
           TAI++ R ++  ++     K+I 
Sbjct: 385 TAITVTRFLLHALLDMDLTKNIK 407



 Score =  117 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 70/172 (40%), Gaps = 4/172 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VG  +    +   +   I   + +++++   ++      A   L++ I      +AL
Sbjct: 232 YSSVGATLGPSALNASLKAGIYGTLLVMLFMIAFYRLP-GFVADLALLIYILINFIVYAL 290

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F I  +L  +A  L  IG +V+  +++++R ++ +       S R  +D    +      
Sbjct: 291 FNITLDLPGIAGFLLSIGMAVDTNILIFERFKEELWA---GKSIRPALDAGFAKAFRAVF 347

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             ++   I  + +   G   +  FA+ +  G+  +  ++I +   +L  + D
Sbjct: 348 DANITTIIGAIILFYLGSGNVKGFALTLLIGVTSSLFTAITVTRFLLHALLD 399



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 22/161 (13%), Positives = 50/161 (31%), Gaps = 6/161 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR+  ++     +I    +       +        P    ++ + LGLDLRGG +++ E 
Sbjct: 1   MRSRGFIKFFSVIIVAAIVAYIAFFGIKAGNYSISP---VQDHMRLGLDLRGGVYVLEEA 57

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
              +     +      +R+ +   G+    + Q   N+I +        +   + +    
Sbjct: 58  QG-NVTQDAINKAIAVIRNRVDALGVTQPVISQQGSNRIRVELPGMNDPDRAIEIIGKTA 116

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
           Q                   + +     +Q  I Q     +
Sbjct: 117 QLKF-VGPDGQVILTGANVKDSKAVYAQTQTGIQQPEVTLV 156


>gi|217971843|ref|YP_002356594.1| acriflavin resistance protein [Shewanella baltica OS223]
 gi|217496978|gb|ACK45171.1| acriflavin resistance protein [Shewanella baltica OS223]
          Length = 1025

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/625 (12%), Positives = 175/625 (28%), Gaps = 45/625 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+  +  +L  M   +GL+        +  +  FP     +            +  +   
Sbjct: 9   RHPIFASVLSIMAVLLGLIA-----FQKLDIQYFPEHTTHSA---------SVNASIAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR-FKE--NIADKVTLF 118
             DF++  +        S + K         + +  +T+ F D     E  N+ +K+   
Sbjct: 55  SADFMSSNVADKLIAAASGIDKVDTMSTDCSEGRCSLTIKFNDDTSDIEYTNLMNKLRSS 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++G+N        K  +   T    S       ++            I +Q + Q+   +
Sbjct: 115 VEGINDFPQSMIDKPTVTDDTSATDSASNIITFVNAGGMEKQAMYDYISQQLVPQLKQVQ 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +++ L    A +       N S        +    S 
Sbjct: 175 GVGAVWGPYGGSQKAVRVWLNPEQMKALNIKAADVVGTLGSYNASFTSGAIKGKSRDFSI 234

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                VE   ++  + +                       G         D +    ++ 
Sbjct: 235 NPLNQVETLEDVKDLVIKV-------------------SEGKIIRVADVADVVMGEESLS 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +             +  +            A ++          +          
Sbjct: 276 PSILSIGGHSAMSLQILPLSNANPVTVASNIKAEIARMQQHLPQGLEMTLAYNQADFIEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S             LV +++ + +   +   +   +I + VI   A++S LG ++ + +I
Sbjct: 336 SIDEGFSALIEAVILVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMSALGFSINVLTI 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E         ++ F +   G       I    +T     + +
Sbjct: 396 LAIILAIGLVVDDAIVVVENCYRHIENGETPFNAAIKGCQEIIFPIIAMTLTLAAVYLPI 455

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
               G      R F+ T+  +++IS   A+++   M  ++      + K    ++     
Sbjct: 456 GLMSGLTADLFRQFSFTLAAAVMISGVVALTLSPMMSAYLINTTEQQPKWFSRVEHALQQ 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L    +   F R R       +L  +  I       +    +  G I +       V
Sbjct: 516 LNDLYIKELDKWFTRKRLMLGAAVVLIGLAGIAYWQLPKILLPAEDSGFIDVASNGPTGV 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614
                 ++   L             
Sbjct: 576 GRQYHLNHNAELNGVMDEHPAVGAN 600



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 91/258 (35%), Gaps = 8/258 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMV 638
            + V   + + ++ V   +   +    S  +  G     +++      + V     ++  
Sbjct: 250 VIKVSEGKIIRVADVADVVMGEESLSPSILSIGGHSAMSLQILPLSNANPVTVASNIKAE 309

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAI 697
             ++ + +P                  I +G   +I + I + LI +        A   I
Sbjct: 310 IARMQQHLPQGLEMTLAYNQADFIEASIDEGFSALIEAVILVSLIVVLFLGSLRAASIPI 369

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ + +       +  G   N+  + A++  IG  V+D +VV +      +      + 
Sbjct: 370 ITIPVCVIGVFAVMSALGFSINVLTILAIILAIGLVVDDAIVVVENC---YRHIENGETP 426

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +   K   E +   +  ++      LP+ +  G    +   F+  +A  ++++   ++ 
Sbjct: 427 FNAAIKGCQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVMISGVVALT 486

Query: 815 IAAPILLFIYDWRAKNAR 832
           ++  +  ++ +   +  +
Sbjct: 487 LSPMMSAYLINTTEQQPK 504



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 29/161 (18%), Positives = 70/161 (43%), Gaps = 7/161 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +  +F+ +   L  + T+ L I   L    LFG   N+ +   +LTL+G 
Sbjct: 858  LLALVFIYLILAAQFESFVDPLIILLTVPLCIVGALLTLTLFGQSVNIYSQIGLLTLVGL 917

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
                 +++ +      K     +S  +    S    L   + TS+   +S +P+A+  G 
Sbjct: 918  VTKHGILLVEFAN---KQQDQGLSAIEAARSSAKSRLRPILMTSLTMILSAIPLALASGP 974

Query: 793  V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                + +  + +  G++     S+F+     + + + +AK+
Sbjct: 975  GSLGLANIGLVLVGGLLAGTFFSLFVVPVAYVAMAELKAKD 1015


>gi|56460330|ref|YP_155611.1| Co/Zn/Cd efflux system membrane component [Idiomarina loihiensis
           L2TR]
 gi|56179340|gb|AAV82062.1| Co/Zn/Cd efflux system membrane component [Idiomarina loihiensis
           L2TR]
          Length = 1041

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 71/591 (12%), Positives = 163/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN + V+L ++I       A+ N    + +D  P       I                  
Sbjct: 11  NNRFFVLLATLILVGVGAFAVKN----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F +         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLSVPGAKTVRGYSFFGDSYVYVIFDEDTDAYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  + +  L    T      +           +  E           ++   E   +
Sbjct: 118 APTLPSNARPQLGPDATGVGWVYLY-ALVDRTGNHNLSELRSMQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP +LR      A +       N      +  +            
Sbjct: 177 VAALGGMVKQYQVKVDPEKLRAFDIPLAHIQNAIQRGNQEVGASVVEMAEAEYMVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   ++                    + +  DE G     +   D    P        +
Sbjct: 237 IDGVSDLE------------------SIPLGVDENGTPLLLKDVADVGVGPQMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   TI+        L++G       +      G    +    
Sbjct: 279 NGEGEAVGGIVVMRFGENAQKTIDGVKQKLEELKSGLPEGVDIVTVYDRSGLISDAVESL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +      +V  +  + + + +  LVA  S+ L ++    ++   G    + S+ GI +
Sbjct: 339 WKSLIEELAIVAFICVIFLFHVRSSLVAVISLPLGILTAFIVMYWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  +D  I++ E + +   K      + +  +    S     +F S +   ++ + +F
Sbjct: 399 AIGAMLDGAIVMIENMHKHMEKTPLTAENRWRVVAASASEVGPALFFSLLIITVSFMPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   A++++  +M + IR K                 
Sbjct: 459 TLEAQEGRMFSPLAFTKTYAMAASAALAVTVIPVLMGYFIRGKVTPEGKNPLNRLLIAGY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++     V  +++     +  +   G  +  D   G  + +   
Sbjct: 519 KPLLKGILKYPKTAVVGALVILAVGVWPIDKIGSEFIPDLDEGDLMYMPTT 569



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 85/263 (32%), Gaps = 16/263 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L     + + L+ V      L    I  +N        V ++     +  +  +  + +
Sbjct: 780  PLVTPNGQRISLADVADVYVELGPPAIKSENARLNGWTFVDIEGVDVGTYVEKAMKVVEQ 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +         T         +   +L    ++ + ++ I +L+Y+  R     A+  + T
Sbjct: 840  ELELPAGYSVTWSGQYEYMERAKEKLTY--VIPLTLAIIIVLLYMNFRNATEIAII-LGT 896

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRK------NMK 749
            L L +  ++    L    F++      + L G +V   +++         +         
Sbjct: 897  LPLALVGSIWLMYLLDYNFSVAVAVGFIALAGVTVEIGILMLTYLNQSYNEYEKSQLEHG 956

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
               T       + +     +   + T+++    +LP+      G  V+   A PM  G++
Sbjct: 957  KALTKDGLSLAVMEGAGLRVRPVMMTAVSTIAGLLPIMFSTGTGAEVVSRIAAPMVGGMI 1016

Query: 807  VAASSSIFIAAPILLFIYDWRAK 829
             A   ++ +   +         K
Sbjct: 1017 SAVILTLLVLPAVYYLWRKKDVK 1039



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 73/203 (35%), Gaps = 2/203 (0%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +       I+  N +GE    + +     ++      ++   +++   +P      T   
Sbjct: 267 VGPQMRRGIAELNGEGEAVGGIVVMRFGENAQKTIDGVKQKLEELKSGLPEGVDIVTVYD 326

Query: 658 GPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
              +  + +      +I     +  I +   F    +L A+ +L L I          GI
Sbjct: 327 RSGLISDAVESLWKSLIEELAIVAFICVIFLFHVRSSLVAVISLPLGILTAFIVMYWQGI 386

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYT 775
             N+ ++  +   IG  ++  +V+ + M K+M+    +   R  ++  S +E      ++
Sbjct: 387 NANIMSLGGIAIAIGAMLDGAIVMIENMHKHMEKTPLTAENRWRVVAASASEVGPALFFS 446

Query: 776 SMAAFISVLPMAVWGGSVIGSFA 798
            +   +S +P+          F+
Sbjct: 447 LLIITVSFMPVFTLEAQEGRMFS 469



 Score = 41.2 bits (94), Expect = 0.82,   Method: Composition-based stats.
 Identities = 47/554 (8%), Positives = 149/554 (26%), Gaps = 74/554 (13%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            ++     V+   +I  +G+            +D+  S           DL  G  + +  
Sbjct: 526  LKYPKTAVVGALVILAVGVW----------PIDKIGSEFIP-------DLDEGDLMYMPT 568

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                   G  +    EL     K    V  ++ +  KI                      
Sbjct: 569  TYPGLSIGKAR----ELLQQTDKLIKTVPEVKTVFGKI------------------GRAD 606

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ------SMEIIRQRIDQI 174
                   +   +  +    + +    ++   + + +   ++        +  I+ RID +
Sbjct: 607  TATDPAPLTMIETFIQLKPKDQWRDGMTTEKLKKELDALVKFPGLTNAWVYPIKTRIDML 666

Query: 175  --GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL-------PNNSKKG 225
              GI      ++    +       Q    +   +  TA +   +V            ++ 
Sbjct: 667  STGIKTPVGIKVAGADLNEIQTIGQQLEAILDDVDGTASVYSERVAGGRYVKVDIEREQA 726

Query: 226  FMFGVRFLRDSDGNQYLVEDKVE---ISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
              +G+            +        I G+        +         ++    +     
Sbjct: 727  ARYGLNIEDVQQVVATAIGGMNVSETIEGLERYPINLRYPQDYRDSPEELKKLPLVTPNG 786

Query: 283  FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
              ++  ++      +    + +             +     T     +            
Sbjct: 787  QRISLADVADVYVELGPPAIKSENARLNGWTFVDIEGVDVGTYVEKAMKVVEQELELPAG 846

Query: 343  KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
                   +    +   + +      +   +++++L+M         +   ++ L ++ ++
Sbjct: 847  YSVTWSGQYEYMERAKEKLTY-VIPLTLAIIIVLLYMNFRNATEIAIILGTLPLALVGSI 905

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF------------- 449
             L+ LL    ++    G +   G+ V+  IL+   + +   + +                
Sbjct: 906  WLMYLLDYNFSVAVAVGFIALAGVTVEIGILMLTYLNQSYNEYEKSQLEHGKALTKDGLS 965

Query: 450  CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
             ++  G       +  + ++ +   + + F    G   V   A  M   ++ ++   + +
Sbjct: 966  LAVMEGAGLRVRPVMMTAVSTIAGLLPIMFSTGTGAEVVSRIAAPMVGGMISAVILTLLV 1025

Query: 507  VRAMMIFIIRYKKM 520
            + A+     +    
Sbjct: 1026 LPAVYYLWRKKDVK 1039


>gi|291299548|ref|YP_003510826.1| MMPL domain-containing protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290568768|gb|ADD41733.1| MMPL domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 718

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 67/501 (13%), Positives = 159/501 (31%), Gaps = 53/501 (10%)

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA---VDS 430
           L++L  +        V   +    V  TL +++L     TLPS    ++ +      VD 
Sbjct: 198 LVILVFMFGSLLAAAVPLGTAIFAVGSTLGVIALASQVFTLPSYLPPLMMLVGLGVGVDY 257

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +L+  R R E         +  +    A  ++  +  T ++A + L+  G G+++G A+
Sbjct: 258 ALLIFSRYRSEILAGADRATAARIAADTAGRSVLFAGCTVIVALLGLYALGLGSLQGVAL 317

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
            + L++ ++M  +I+++ A++    R    + +     S+               R   V
Sbjct: 318 GVALTVAVTMLASITLLPALLTMFGRRIAARILKRAKRSKREPGHGWRRWGAFMQRRPVV 377

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGI---------------------------QLGV 583
            + +  +  +   +    L  G    G                              +  
Sbjct: 378 PLLLAVAALAAMCVPALDLRLGFADAGTDTPGSTSRAAYDVMTDGFGPGANGPILVLVEG 437

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +    + + ++    +F   D      V     P D      V E+ +  + 
Sbjct: 438 SLEDAQTAADALRDTDGVEDATPAFPIEDELAMVQVFPDSAPQDDATGRLVTELREDVLP 497

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-----LIYIWIRFKWYFALGAIT 698
            I   +            + +        + +  + +     L+ + +       + A  
Sbjct: 498 PIADDTGATYLVGGSTAATVDFADAVSQRMPLFLLLVIGLSSLLLMAVFRSVLIPVKAAI 557

Query: 699 TLILDITKTLGF------FALFGIE------FNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             +L I  +LG       +  FG +      F  T + A+  + G S++ +V +  RM +
Sbjct: 558 LNLLSIGASLGVVTLVYQYGWFGAQPGPIEAFVPTMIFAI--VFGLSMDYEVFLVSRMHE 615

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +           + + +  T G     +    +      +    ++  F + +A  I 
Sbjct: 616 EWR---RGGDADHAVREGLATTGGVITAAAAIMIVVFGAFVLSADRMLQQFGLGLAVAIA 672

Query: 807 VAASSSIF-IAAPILLFIYDW 826
           V A      +   ++  +   
Sbjct: 673 VDALVIRCLVVPTVMRLLGPR 693


>gi|220927989|ref|YP_002504898.1| protein-export membrane protein SecD [Clostridium cellulolyticum
           H10]
 gi|219998317|gb|ACL74918.1| protein-export membrane protein SecD [Clostridium cellulolyticum
           H10]
          Length = 441

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 89/224 (39%), Gaps = 5/224 (2%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +++  I   + Q      +  + L     +             K   +      +    +
Sbjct: 197 MDNDLISAPNVQTQISGNSARITLGGTASNEQRDEAKNLAGLIKSGSLPFKLEARQVNNI 256

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
            P +    ++  I   I++ I + +++   ++    L A   LIL     L   +   I 
Sbjct: 257 SPTLGSNALKVSIEAFIVALILICLFMIFYYRLP-GLIASIALILHTVMELLALSWTNII 315

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  +G +V+  V++++R++  +K      + R  ID          + +++
Sbjct: 316 VTLPGIAGLILTVGMAVDANVIIFERIKDELK---NGKTLRAAIDVGFKRAFSAVLDSNI 372

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
              IS + +  +G   I SFA  +  G+V++  +++  A+ I+L
Sbjct: 373 TTLISAVVLWKFGSGPIQSFAYTLGIGVVLSFLTAV-TASRIML 415



 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 114/403 (28%), Positives = 204/403 (50%), Gaps = 24/403 (5%)

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH---- 187
           +  +      +  +     +  +  +  ++ +  II +R+D   I +  I          
Sbjct: 40  RTGIDIQGGVDARLYAVTKDNSKPKAEDLDAARIIIGKRLDSKNIFDRVITVDKDKGYVL 99

Query: 188 -RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
            +I  +     DP R  + +G TA ++F +V  +                    YL   K
Sbjct: 100 VQIPHKKGEAFDPQRSIEEIGKTALLTFQEVDESKKDSNG--------------YLPTGK 145

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           + + G  +  A+A  D +     V ++    G ++F E T   IGKP+A+ +D  +++AP
Sbjct: 146 IILEGSDVKEASAEVDGENGGYCVALTLTSEGGKKFSEATGRLIGKPIAIFMDNDLISAP 205

Query: 307 VINQAIPSGKAQISGNFTI-----ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +   I    A+I+   T      + A  LA ++++GSLP KL   +  N+   LGS+++
Sbjct: 206 NVQTQISGNSARITLGGTASNEQRDEAKNLAGLIKSGSLPFKLEARQVNNISPTLGSNAL 265

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A +  L+LI LFMI  Y   GL+A  ++ L+ ++ L  LS     +TLP IAG++
Sbjct: 266 KVSIEAFIVALILICLFMIFYYRLPGLIASIALILHTVMELLALSWTNIIVTLPGIAGLI 325

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+AVD+N+++ ERI++E +  +++  ++D+GF RA+S + DSNIT LI+ VVL+ FG
Sbjct: 326 LTVGMAVDANVIIFERIKDELKNGKTLRAAIDVGFKRAFSAVLDSNITTLISAVVLWKFG 385

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G ++ FA T+G+ +++S  TA++  R M+  I   +  K   
Sbjct: 386 SGPIQSFAYTLGIGVVLSFLTAVTASRIMLQSIQDLEVAKHHW 428


>gi|325928576|ref|ZP_08189763.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
 gi|325541052|gb|EGD12607.1| cation/multidrug efflux pump [Xanthomonas perforans 91-118]
          Length = 360

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 31/355 (8%), Positives = 75/355 (21%), Gaps = 35/355 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P               +      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  SR  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDALAGIEGISTIEARSRNGSSDISIEFVQSRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARPPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARELTVADVEAALQNENVELPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLNKGEGGYVVRLGDVARVELTSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +  +       A   A  ++          V          
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVAREARAQAEEVQKSLPKGTNIFVAFDTTTFIDA 329


>gi|114047202|ref|YP_737752.1| acriflavin resistance protein [Shewanella sp. MR-7]
 gi|113888644|gb|ABI42695.1| acriflavin resistance protein [Shewanella sp. MR-7]
          Length = 1018

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 82/681 (12%), Positives = 205/681 (30%), Gaps = 46/681 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  I   GL  +         L+ FP       +           +  +  
Sbjct: 9   KRPVTTSMFFFAILLFGLASS-----RLLPLEMFPGIDIPQIV---------VQVPYKGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + +           Q   +I ++          + +    +  
Sbjct: 55  TPAEVERDITKVLEESLATMGGIDELESESSQEGAEIEINMKWGENVATKSLEAREKIDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++  +   +  ++ ++  + + D+ +S A +      +Q    +   E   
Sbjct: 115 VRHLLPKDVERVFIRQFSTADMPVLTIRISSDRELSGAFDLLD---KQLKRPLERVEGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         Q+    + +RL     +  ++       N            L      + 
Sbjct: 172 KVNLYGVEQKQIEVRINANRLAASGYSATELQTRLGRENFVLSAGTLRESNLVYQVSPKG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  +I  + L       D    +  +    +     + + V  D   +  A +++  
Sbjct: 232 EFRNLEDIKALVLLPGLTLDDVADVQFALPERVEGRHLDKHYAVGLDVFKESGANLVEVS 291

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                VI  A    + Q    F +E                               S S 
Sbjct: 292 DRVLEVIELAKQDQQFQGIRLFIME-----------------------DQASGVKSSLSD 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  I A L  IVL++ +   K  L+   S+ +++ +TLA + LLG +L + S+ G++
Sbjct: 329 LLLSGLIGALLSFIVLYLFLRNFKMTLIVVSSVPISIGMTLAAMYLLGYSLNILSMMGLL 388

Query: 422 LGIGLAVDSNILVNERIREENRKN-----QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           L +G+ +D+ ++V E + +E +       +    ++  G  +    +    +T  I  + 
Sbjct: 389 LAVGMLIDNAVVVTESVLQEKQGKATNSAEDNENAVMTGVDKVSLAVLAGTMTTAIVFLP 448

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             F     +  F   + ++I IS+  ++ + + ++  ++              +     +
Sbjct: 449 NIFGVKVELTIFLEHVAIAICISLAASLLVAKTLIPLMLTKFHFDIAPEKAPGKLQNFYN 508

Query: 537 CI-AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                  +R    G+    +    ++ L            K  I +        +L+V  
Sbjct: 509 RSLNWVLLRPWRSGLISVAILVSTALPLSMVKQDQEDSQSKERIYINYQVEGRHNLNVTE 568

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + +  ++    + +      +           SV   +    +     +    S      
Sbjct: 569 AMVSQMEEYLYNNKEEFHIDSVYSYYAPDDASSVILLKKDLPMPLDELKKKIRSGFPKFS 628

Query: 656 IVGPKISRELIRKGIVGVIIS 676
           I  P+        G+   +  
Sbjct: 629 IAKPQFGWGNDNSGVRVTLTG 649



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 93/254 (36%), Gaps = 14/254 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V  ++ +      +++E L   D            +     +     AQT++ ++++   
Sbjct: 752 VRIDQRLYTLDNLASIEILPRFDTIKHYNRQTSLSIGANLDKLTTEEAQTKIKQVMENVR 811

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
                  +++       +    +       ++++   + I +   F+        IT+++
Sbjct: 812 FPNGYNYSLRGGFERQDEDESVMAIN----MLLAIAMIYIVMAALFESLLLPTAIITSIL 867

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
             IT       L G   ++ A+  +L L+G  VN+ +V+ D++ +            D I
Sbjct: 868 FSITGVFWALLLTGTPMSVMAMIGILILMGIVVNNGIVLVDQINQMTPELDK---LSDTI 924

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIGSFAIPMAFGIVVAASSSIFI 815
            +     L   + T     + ++P+A+       GG      AI +  G+  +  +S+++
Sbjct: 925 REVCITRLRPVLMTVGTTVLGLVPLAMGETQIGGGGPPYSPMAIAIIGGLSFSTVTSLYL 984

Query: 816 AAPILLFIYDWRAK 829
                  +Y  R +
Sbjct: 985 VPLCYQLLYRMRYR 998



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 93/240 (38%), Gaps = 5/240 (2%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ V+  L     G    +++    +          +   +   +  + K+  +   + 
Sbjct: 252 DVADVQFALPERVEGRHLDKHYAVGLDVFKESGANLVEVSDRVLEVIELAKQDQQFQGIR 311

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                +      S          +      +++Y+++R  +   L  ++++ + I  TL 
Sbjct: 312 LFIMEDQASGVKSSLSDLLLSGLIGALLSFIVLYLFLR-NFKMTLIVVSSVPISIGMTLA 370

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRDLIDKSINE 767
              L G   N+ ++  +L  +G  +++ VVV + + +  +   T+      + +   +++
Sbjct: 371 AMYLLGYSLNILSMMGLLLAVGMLIDNAVVVTESVLQEKQGKATNSAEDNENAVMTGVDK 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV-IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                +  +M   I  LP  ++G  V +  F   +A  I ++ ++S+ +A  ++  +   
Sbjct: 431 VSLAVLAGTMTTAIVFLP-NIFGVKVELTIFLEHVAIAICISLAASLLVAKTLIPLMLTK 489


>gi|225620304|ref|YP_002721561.1| preprotein translocase subunit SecD [Brachyspira hyodysenteriae
           WA1]
 gi|225215123|gb|ACN83857.1| preprotein translocase subunit SecD [Brachyspira hyodysenteriae
           WA1]
          Length = 503

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 42/310 (13%), Positives = 111/310 (35%), Gaps = 8/310 (2%)

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
           +      +    P     L        F R       I           L    +  G  
Sbjct: 181 MLMGVFTNTAKVPEYGKQLYFYSEKDDFGRRVRGAPVIVNKEPSLEGSALINAQVGGGQF 240

Query: 575 FKGGIQLGVLANRPVDLSVV----RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
            +  ++  + A      + V    ++ + ++ + D      +             G    
Sbjct: 241 GEVTVEFELNAEGSTQFAEVTAQNKNRMLAIVLDDKVISAPNINDEIRGGRGVITGRFTL 300

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
           +         K   +    +I   E+VG  I  + ++ G   ++++A+ + +++   ++ 
Sbjct: 301 EEAQDLARILKEGALPINVSIVEEEVVGQSIGADSVKAGATALLMAAVLVAVFMIAVYRV 360

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              + +   +++++   +   +       L  +A ++  IG +V+  V++++R++  +K+
Sbjct: 361 S-GVLSTIAMLVNVVLIIAVLSPLRFTLTLPGIAGLILTIGMAVDANVIIFERIKDELKV 419

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                S  D I    +        +++   I  L + ++G   +  FAI + FGI++   
Sbjct: 420 ---KSSVADAIISGYDRAFATIFDSNITTIIVALILWIFGSGPVQGFAITLFFGILINLF 476

Query: 811 SSIFIAAPIL 820
           +++FI   I 
Sbjct: 477 TAVFITRYIY 486



 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 146/450 (32%), Positives = 248/450 (55%), Gaps = 29/450 (6%)

Query: 106 RFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL---SQNNIDQVISHAIEQ 162
              +N+     L  + VN  L++     +++    +E +  L   + +   +  + A+E+
Sbjct: 54  EQIDNVQSLKRLRSESVNMGLDLQGGIRIVLQADFEEYANRLDRTAASLTAEEKNDAMER 113

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
            +  +R RIDQ G+SE  I++ G  R++++LPG +DP R++ ++ +   ++F+ V    +
Sbjct: 114 LISRLRGRIDQFGVSEVGIRKQGEDRVVVELPGARDPDRIKSVVLSQGALTFNLVDEQAT 173

Query: 223 KKGFMFGVRFLRDSD-------------------------GNQYLVEDKVEISGIHLNGA 257
                  +     ++                         G   +V  +  + G  L  A
Sbjct: 174 ATLTTNDMLMGVFTNTAKVPEYGKQLYFYSEKDDFGRRVRGAPVIVNKEPSLEGSALINA 233

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                    +  V+   +  G+ +F EVT  N  + LA+VLD +V++AP IN  I  G+ 
Sbjct: 234 QVGGGQFG-EVTVEFELNAEGSTQFAEVTAQNKNRMLAIVLDDKVISAPNINDEIRGGRG 292

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
            I+G FT+E A  LA +L+ G+LPI ++IVEE  VG  +G+DS+  G  A++   VL+ +
Sbjct: 293 VITGRFTLEEAQDLARILKEGALPINVSIVEEEVVGQSIGADSVKAGATALLMAAVLVAV 352

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           FMI +Y   G+++  ++ +NV+L +A+LS L  TLTLP IAG++L IG+AVD+N+++ ER
Sbjct: 353 FMIAVYRVSGVLSTIAMLVNVVLIIAVLSPLRFTLTLPGIAGLILTIGMAVDANVIIFER 412

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           I++E +   SV  ++  G+ RA++TIFDSNIT +I  ++L+ FG G V+GFAIT+   IL
Sbjct: 413 IKDELKVKSSVADAIISGYDRAFATIFDSNITTIIVALILWIFGSGPVQGFAITLFFGIL 472

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           I++FTA+ I R +   IIR K +K      
Sbjct: 473 INLFTAVFITRYIYEEIIRTKIVKKAGFFF 502


>gi|227114927|ref|ZP_03828583.1| cation efflux system protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 1045

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 64/551 (11%), Positives = 141/551 (25%), Gaps = 48/551 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   +++    +   GLL      L ++ LD  P       I           +    
Sbjct: 10  LKNRLLVLLAALFMAAWGLLS-----LQKTPLDALPDLSDVQVI---------IRVSYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          +                + + F D         +V  +L 
Sbjct: 56  KAPQVVENQVTYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFEDGTDPYWARSRVLEYLS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S L  D K +L    T                     +           ++      
Sbjct: 116 QVQSSLPADAKTSLGPDATGVGWIYEY-ALVDRSGKYSLADLRGFQDWLLKYELKTVPDV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ Q     DP R+R L  T  ++       N    G +  +          
Sbjct: 175 AEVASVGGMVKQYQIVVDPERMRTLGITHQQIVSAVKAANQENGGSVLELGEAEYMVRTT 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++                           +     G     +        P       
Sbjct: 235 GYLKS-------------------MQDFNHVVITTRNGIPVLLQDVATLREGPEMRRGIA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   I   +   +   T+         ++         +           +  
Sbjct: 276 ELNGEGEVAGGIIVLRYGKNALNTLHAVKARLQEIQKSLPAGVEIVPTYDRSQLIEHAID 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V I+  + + + +  LVA  S+ L ++    ++   G    + S+ GI
Sbjct: 336 TLSFKLLEEFVVVAIICALFLFHFRSALVAIISLPLGILGAFIIMRYQGVNANIMSLGGI 395

Query: 421 VLGIGLAVDSNILVNERIRE-----------ENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            + IG  VD+ I++ E + +           +  +N   +   +         +F S + 
Sbjct: 396 AIAIGAMVDAAIVMIENMHKVIEQWRHENPGKQPQNNEWWQLAERAAVEVGPALFCSLLI 455

Query: 470 ALIATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             ++ V +F      G      A T   ++ ++    I++V  +M + +R K        
Sbjct: 456 ITLSFVPVFSLEAQEGRMFSPLAFTKTYAMAVAAGLGITLVPVLMGYFVRGKIPDEQANP 515

Query: 527 PLSRFFLIPDC 537
                      
Sbjct: 516 INRWLIAAYHP 526



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 81/251 (32%), Gaps = 17/251 (6%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             + S V     +             E + L    Y           +E +++ +T+ V L
Sbjct: 790  ANGSRVMLAELADIRVSEGPPMLKSENSRLSDWIYVDLRGRDLKSAVEDMQQAVTQQVTL 849

Query: 649  STIQNTEIVGP-KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                +    G  +       K  V V  + + + + +++ F +   AL  + TL   +  
Sbjct: 850  PEGVSLSWSGQFEYLERATEKMKVVVPFTLLIIFVLLYVTFNRIKDALLIMATLPFALIG 909

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---------DRMRKNMKLYTTSISF 757
             +    + G   ++      + L G S    V++           R+        +    
Sbjct: 910  GVWLLYILGYNLSVAGAVGFIALAGVSAEFGVIMLLYLNHAVEKHRV---AGQALSRQQL 966

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF 814
             D I +     +   + T       +LP+      G  ++   A PM  G+V A   S+ 
Sbjct: 967  MDAIHEGAVLRVRPKMMTVATIMAGLLPIMWGGGSGSEIMQRIAAPMIGGMVSAPLLSML 1026

Query: 815  IAAPILLFIYD 825
            +   + L ++ 
Sbjct: 1027 VIPAVYLLLHK 1037



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 13/291 (4%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S+L    +  ++ T G    +     + +      PV L  V +  E  ++     +   
Sbjct: 220 SVLELGEAEYMVRTTGYLKSMQDFNHVVITTRNGIPVLLQDVATLREGPEMRRGIAELNG 279

Query: 613 GEK--NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
             +    ++ L+Y          V   +++    +     I  T      I   +     
Sbjct: 280 EGEVAGGIIVLRYGKNALNTLHAVKARLQEIQKSLPAGVEIVPTYDRSQLIEHAIDTLSF 339

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +    +  +I     F +  AL AI +L L I          G+  N+ ++  +   I
Sbjct: 340 KLLEEFVVVAIICALFLFHFRSALVAIISLPLGILGAFIIMRYQGVNANIMSLGGIAIAI 399

Query: 731 GYSVNDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFIS 782
           G  V+  +V+ + M    +  +        +      L +++  E       + +   +S
Sbjct: 400 GAMVDAAIVMIENMHKVIEQWRHENPGKQPQNNEWWQLAERAAVEVGPALFCSLLIITLS 459

Query: 783 VLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +P+          F   A    + + VAA   I +   ++ +    +  +
Sbjct: 460 FVPVFSLEAQEGRMFSPLAFTKTYAMAVAAGLGITLVPVLMGYFVRGKIPD 510


>gi|332993920|gb|AEF03975.1| RND family efflux transporter [Alteromonas sp. SN2]
          Length = 1039

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/650 (12%), Positives = 190/650 (29%), Gaps = 48/650 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    +V+L  +I   GL     + L    +   P                         
Sbjct: 16  RRPVLIVVLNLLIAIAGL-----SALNALEVRELPDVDTPRIT---------VTATYPGA 61

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    +   + +           +   +I + F      E+ A++    +  
Sbjct: 62  SPETVDAEVTSRLEGAVARVSGVKNISAQSEENSARIRVEFRAGVNLEDAANETRESVSR 121

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  D ++  ++       ++V    + D +       +  +               
Sbjct: 122 VQRQLPDDVEELAIIRADSDAQAVVSLAISSDTLDMET--LTERVDTDVAPLFLSIPGVA 179

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S      L    DP RL     + A+++    L                       
Sbjct: 180 DVSMSGDRERVLRVSVDPLRLTSFGLSMAEIASALALAPFDVPAGSIQSSDQALIVRADA 239

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 ++  I ++G                                ++    A      
Sbjct: 240 TSVSAEDVGNIVVSGD------------------------IRIGDVASVYFGPADSSSMV 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +       +A  +     +    +   L      +K+ +    +      S   
Sbjct: 276 RLDGRPVIGLGVIRQASSNTIEISDEVLSMVKDLDKRFTDMKIVVTS-DDAEFIRDSVKE 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              + ++   LV++ L + +   +  +V   SI +++   L ++  +G ++ + ++  +V
Sbjct: 335 VVVSLSLTVALVVLTLLVFIGSWRATIVPALSIPVSLAGALGIIWAMGFSVNILTLLALV 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  G+ VD  I+V+E I+           +  +G    +  +  +        + + F  
Sbjct: 395 LATGMIVDDAIVVSENIQRRRAMGLGPRAAAVIGTREVFFAVIATTAVLASVFIPIAFLP 454

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID----INPLSRFFLI 534
              G   R F   +  +++IS F A+S+V A+   + + +  KS              L 
Sbjct: 455 STAGRLFREFGGVLAGAVIISSFVALSLVPALTARLSKKQSTKSGFFDATFGRFGHACLR 514

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
               ++ F     W VGI  L +     LL  +  N  +  +    + + A  P    + 
Sbjct: 515 LYQKSLVFALKYAWAVGIVSLLAGGGAYLLAKNIDNELMPSEDRGTIRIFARGPDGAGLN 574

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             + ++ ++ ++ F   +      +       D       + +      +
Sbjct: 575 FMDRQAEKMEEMLFPYVENGTIDSIYTVVGQWDPNIVFITVPLKHWDDRD 624



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 84/221 (38%), Gaps = 8/221 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            +   + ++    + +A + V++ +++   E +P                   +  +  V+
Sbjct: 801  QRRAINIEMDLPEDLALSDVVDSIRELGNETLPDGMGLVFLGEAQTYEETSKQVALTYVL 860

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             + I +L+ +  +F+    A+  + T+   I   +    L     N+ +   ++ LIG  
Sbjct: 861  -AFIIVLLVLAAQFESVNSAVVVMLTVPFGIAAAIYALYLTSTSINIYSQIGLVMLIGLL 919

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
              + +++ +      +L     S  D I ++    L   + T ++  +  LP+ +    G
Sbjct: 920  AKNAILLIEFA---DQLRDKGYSVYDAIIEAGRVRLRPIMMTLVSTILGGLPLILSTGAG 976

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 +    +  G+ +A   ++++   + L +  +    A
Sbjct: 977  AEARNAIGWVVFGGLGIAVVFTLYLTPVLYLALARFTKPRA 1017



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +    ++ + +   LG     G   N+  + A++   G  V+D +VV + +    
Sbjct: 356 SWRATIVPALSIPVSLAGALGIIWAMGFSVNILTLLALVLATGMIVDDAIVVSENI---Q 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +     +  R        E     + T+       +P+A      G +   F   +A  +
Sbjct: 413 RRRAMGLGPRAAAVIGTREVFFAVIATTAVLASVFIPIAFLPSTAGRLFREFGGVLAGAV 472

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           ++++  ++ +   +   +   ++  +
Sbjct: 473 IISSFVALSLVPALTARLSKKQSTKS 498


>gi|300856538|ref|YP_003781522.1| putative protein-export membrane protein [Clostridium ljungdahlii
           DSM 13528]
 gi|300436653|gb|ADK16420.1| predicted protein-export membrane protein [Clostridium ljungdahlii
           DSM 13528]
          Length = 424

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 92/254 (36%), Gaps = 8/254 (3%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G I L +  +     +         +I     ++   +      +            + 
Sbjct: 151 QGVINLELNQSGAQKFADATQKFMGQKITIYLDKDKLSDPQVDAHITDGRAIISGHMTMK 210

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG----IVGVIISAIAMLIYIWIRFKWY 691
           E   K          +    +    +   L        I+   I    ++I++ + ++  
Sbjct: 211 EAQTKANLIKSGALPVTVKPVQVKTVGASLGANALPLSILAGKIGIGLVMIFMLLYYRLP 270

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L A   L+L +   L  FA   +   L  +AA L  +G +V+  +++++R ++ +K  
Sbjct: 271 -GLVADIALVLYVYIVLAAFANVNVTLTLAGIAAFLLTVGMAVDANILIFERTKEELK-- 327

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
            +  S R  +D      +   + +++   IS   +   G   +  FA+ +  G +++  +
Sbjct: 328 -SGKSIRASVDAGFRRAMTSILDSNITTIISGCVLYNIGTGSVKGFALTLIIGTILSMFT 386

Query: 812 SIFIAAPILLFIYD 825
           +I +   ++  + +
Sbjct: 387 AITVTRTLMKLLAN 400



 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 114/378 (30%), Positives = 209/378 (55%), Gaps = 27/378 (7%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +     V    + +++++I QR++++G+SE+T  R G  RI I +PG+ D   +   
Sbjct: 55  VLEEIQSKNVDQDTVNRTVDMISQRVNKLGVSETTTVREGKDRIRIDIPGKFDAKEVVDG 114

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-ATANFDPK 264
           +  T  + F                             ++K  ++G  +     +     
Sbjct: 115 VAKTGDLKF--------------------------VGPDNKTILTGKDVKNATASIDPQN 148

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             + V+++  ++ GA++F + T+  +G+ + + LD   L+ P ++  I  G+A ISG+ T
Sbjct: 149 GSQGVINLELNQSGAQKFADATQKFMGQKITIYLDKDKLSDPQVDAHITDGRAIISGHMT 208

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++ A   A ++++G+LP+ +  V+ + VGA LG++++     A   G+ L+++FM++ Y 
Sbjct: 209 MKEAQTKANLIKSGALPVTVKPVQVKTVGASLGANALPLSILAGKIGIGLVMIFMLLYYR 268

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             GLVAD ++ L V + LA  + +  TLTL  IA  +L +G+AVD+NIL+ ER +EE + 
Sbjct: 269 LPGLVADIALVLYVYIVLAAFANVNVTLTLAGIAAFLLTVGMAVDANILIFERTKEELKS 328

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            +S+  S+D GF RA ++I DSNIT +I+  VL+  G G+V+GFA+T+ +  ++SMFTAI
Sbjct: 329 GKSIRASVDAGFRRAMTSILDSNITTIISGCVLYNIGTGSVKGFALTLIIGTILSMFTAI 388

Query: 505 SIVRAMMIFIIRYKKMKS 522
           ++ R +M  +        
Sbjct: 389 TVTRTLMKLLANMGWFNH 406



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 43/122 (35%), Gaps = 2/122 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +     +   +C I +               +        I+ GLDL+GG  ++ E+
Sbjct: 1   MK-SKAKSTVVFFLCIILIGFLAYTGAYGVTFGGYKLKPFSQVINKGLDLQGGVSVLEEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGV-FSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              +     +    D +   + K G+    ++R+ +++I +        + + D V    
Sbjct: 60  QSKNVDQDTVNRTVDMISQRVNKLGVSETTTVREGKDRIRIDIPGKFDAKEVVDGVAKTG 119

Query: 120 QG 121
             
Sbjct: 120 DL 121


>gi|298250647|ref|ZP_06974451.1| acriflavin resistance protein [Ktedonobacter racemifer DSM 44963]
 gi|297548651|gb|EFH82518.1| acriflavin resistance protein [Ktedonobacter racemifer DSM 44963]
          Length = 1064

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/684 (10%), Positives = 183/684 (26%), Gaps = 35/684 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N     ++   +  +G  +             FP+                   V     
Sbjct: 11  NRSIAALVTIAVILVGAFVIPSLKQELMPSLSFPAISIVT--------------VYPGAS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    ++          +  ++I + +  S   +     +T  +   
Sbjct: 57  PQSVEQEVTNPLEKSIQGVQGLQQITSYSSEGVSQIIVQYDYSVDLDKANQTLTQLVNKA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L       +       +  I L+ ++         + + ++ +     +       Q
Sbjct: 117 QTSLPSSVTPQVNTFNIADQPIIRLAVSSSSNQQ----DLAAKLDQDVTPVLEGLNGVGQ 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN--- 239
              +      +    D  +L+    +T+++       N +             +      
Sbjct: 173 VQVTGVRTQLVQIALDLKKLQAKGLSTSQVQSVLQANNTTISVGEVKDNGQTVAVRVNNA 232

Query: 240 --------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                     +V      S    +             +   +     ++         + 
Sbjct: 233 VTTLDDLKNLVVSGGSSTSQQASSSMPGGQKLPPGMTLPTTTTQSTPSQPVKLEDVATVE 292

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           + LA                  +  +  +     +      + L           V    
Sbjct: 293 QVLAPSTTLTRTNGKDSLGISITKNSNANTVSVSQEVKNKLSELEQKLGSGATITVIADQ 352

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
             +   S +      AI AG  ++ + + +L  +  LV   SI +++I+ L  L + G +
Sbjct: 353 APSIQASVNDLVREGAIGAGFAILTILLFLLSIRSTLVTAISIPVSIIIALIGLWVGGFS 412

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L + ++ G+ + IG  VD +I+V E I    +  +    ++  G       I  S +T +
Sbjct: 413 LNILTLGGLTIAIGRVVDDSIVVLENIYRHLQSGEEKRVAVLNGVREVAGAITASTLTTV 472

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + + F     G   + F++ + +++L S+  A++I+  +  + ++  K      +  
Sbjct: 473 AVFLPIAFTTGLVGEFFQPFSVAVTIALLASLLIALTIIPVLAYWFLKTPKRVQRADSHE 532

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISIL---FSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
               L    + +     R+  V + I                    G        +    
Sbjct: 533 KVGILEKAYVPMIRWVTRYRVVTLIIALALLVSAGWGATKLDTNLIGNSNSNSFTISQQL 592

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
               DL       + ++    + Q     +  +       G     +             
Sbjct: 593 PATADLDTTNKAAQEVEAILKNIQGIKNYQVTIGSGGSGGGGRFFGSSGGSTNTATFAVT 652

Query: 646 VPLSTIQNTEIVGPKISRELIRKG 669
                 Q T         + +   
Sbjct: 653 TNDGVDQTTVQQQVSDQIKTLSNA 676



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 6/229 (2%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           +  N        +              V   + +   ++   +TI       P I   + 
Sbjct: 302 TRTNGKDSLGISITKNSNANTVSVSQEVKNKLSELEQKLGSGATITVIADQAPSIQASVN 361

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                G I +  A+L  +         L    ++ + I   L    + G   N+  +  +
Sbjct: 362 DLVREGAIGAGFAILTILLFLLSIRSTLVTAISIPVSIIIALIGLWVGGFSLNILTLGGL 421

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
              IG  V+D +VV + +    +   +    R  +   + E  G    +++      LP+
Sbjct: 422 TIAIGRVVDDSIVVLENI---YRHLQSGEEKRVAVLNGVREVAGAITASTLTTVAVFLPI 478

Query: 787 AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           A      G     F++ +   ++ +   ++ I   +  +      +  R
Sbjct: 479 AFTTGLVGEFFQPFSVAVTIALLASLLIALTIIPVLAYWFLKTPKRVQR 527



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 87/262 (33%), Gaps = 10/262 (3%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            +G   + + +          + +  +                +               V 
Sbjct: 792  EGMKDMLIPSTTGTVRLGDLAAVTQVNGPTQITHVSGSRTATISATVTSQNVGAVSANVQ 851

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
              +K          ++     +  +  + L    ++ +++  + M   +         L 
Sbjct: 852  SRLKALSLPAGASFSLGGVSSMQSQAFQSLGLALLIAILLVYVVM---VATFRSLLQPLL 908

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
             + ++ L  T ++    +      L A+  +L LIG  V + +V+ D + +  K     +
Sbjct: 909  LLVSIPLAGTGSVALLLITHTALGLPALIGLLMLIGIVVTNAIVLLDLVNQYRK---KGL 965

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVL--PMAVWGGSVIGS--FAIPMAFGIVVAASS 811
              R  + +     L   + T++A  ++++   + V G S   S   AI +  G+  +   
Sbjct: 966  DARTAVIEGGRRRLRPILMTAVATILALIPMALGVSGSSAFLSGPLAIVVIGGLTSSTFL 1025

Query: 812  SIFIAAPILLFIYDWRAKNARI 833
            ++ I   +   + D R ++  +
Sbjct: 1026 TLLIVPTLYTLVEDIRGRSGSL 1047


>gi|296270034|ref|YP_003652666.1| protein-export membrane protein SecD [Thermobispora bispora DSM
           43833]
 gi|296092821|gb|ADG88773.1| protein-export membrane protein SecD [Thermobispora bispora DSM
           43833]
          Length = 547

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 116/481 (24%), Positives = 192/481 (39%), Gaps = 15/481 (3%)

Query: 46  LGLDLRGGSHLVLEVDEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF 102
            GLDL GG+ + L     D        L      +R+ +   GI    + ++ + I +S 
Sbjct: 34  FGLDLAGGTTVTLSPVTPDGGSPSQESLDRAVAIIRARVNGTGITDAEVAKVNDTIVVSI 93

Query: 103 ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ 162
             +   E     ++   +     +                     +        +     
Sbjct: 94  PGAGRPE-AIKLISTTAELRMRPVLAVAPARPGPGPLPTPAPTAAAGQGPLPTAAPTPAA 152

Query: 163 SMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
                R+R  + G          +      L G+        LL     +          
Sbjct: 153 QAAGARERA-EPGRGSPAASPSPTPTGADPLAGQDLTGIDPALLDRFRTLDCTARNRGQG 211

Query: 223 KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
            +           +DG+   + DK  + G  + GATA  D    +  V +SF   GA + 
Sbjct: 212 TQDDPDRQIVACSADGSLRYILDKAAVQGTEIAGATAGADRTIGEWAVQVSFKPRGAAQL 271

Query: 283 FEVTRDNIGKPLAVVL-----DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA 337
            EVTR   G P          DG V+ AP I +AIP G A+I G+ T  +A  LA  L+ 
Sbjct: 272 AEVTRRISGLPAPRNRLASVLDGVVIVAPAIKEAIPGGTARIFGDLTQRSATELAEQLKY 331

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           G+LP+        +V + LG D +  G  A   GL+L+V +++  Y   GL+   S+ + 
Sbjct: 332 GALPLTFRTASVVSVSSTLGQDQLRGGLLAGALGLLLVVPYLLGYYRGLGLIGVASLGVA 391

Query: 398 VILTLALLSLLG----ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV-FCSL 452
            ++T   ++LL       L+LP + G+V+ IG+  DS I+  ERIR+E R+ +     ++
Sbjct: 392 GVITYLAVALLSHNAGFRLSLPHLIGLVVSIGVTADSFIVFFERIRDELRRGRRALRPAV 451

Query: 453 DMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI 512
           ++ + RA  TI  ++    IA VVL+    G V GFA  MGL+ LI +   +   + +  
Sbjct: 452 EVAWRRARRTILIADTVMFIAAVVLYVLAVGGVAGFAFAMGLTTLIDLIVVVLFTKPVTS 511

Query: 513 F 513
            
Sbjct: 512 L 512



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 73/198 (36%), Gaps = 7/198 (3%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
           GD   ++      + K   +       +   V   + ++ +R G++   +  + ++ Y+ 
Sbjct: 315 GDLTQRSATELAEQLKYGALPLTFRTASVVSVSSTLGQDQLRGGLLAGALGLLLVVPYLL 374

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALF----GIEFNLTAVAAVLTLIGYSVNDKVVVY 741
             ++    L  + +L +    T    AL     G   +L  +  ++  IG + +  +V +
Sbjct: 375 GYYR-GLGLIGVASLGVAGVITYLAVALLSHNAGFRLSLPHLIGLVVSIGVTADSFIVFF 433

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           +R+R  ++      + R  ++ +        +      FI+ + + V     +  FA  M
Sbjct: 434 ERIRDELRRGRR--ALRPAVEVAWRRARRTILIADTVMFIAAVVLYVLAVGGVAGFAFAM 491

Query: 802 AFGIVVAASSSIFIAAPI 819
               ++     +    P+
Sbjct: 492 GLTTLIDLIVVVLFTKPV 509


>gi|253996699|ref|YP_003048763.1| acriflavin resistance protein [Methylotenera mobilis JLW8]
 gi|253983378|gb|ACT48236.1| acriflavin resistance protein [Methylotenera mobilis JLW8]
          Length = 1048

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 81/695 (11%), Positives = 205/695 (29%), Gaps = 58/695 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +  ++ L S+I   GL       L +S LD FP   P             + ++++ +
Sbjct: 11  RFSGVIIGLASLIIVYGLFS-----LTRSNLDVFPEFAP-------------TQIIIQTE 52

Query: 62  EDDFVNGFLQMYS-DELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++      + +                   + +T+ F +S         +  
Sbjct: 53  SPGLSAELVESLVTQPIETSAAGTVGIKSMRSQSIPGLSIVTIIFNESTDIYRNRQVIAE 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L  + +KL      N+   T+     +      +        E    +    +  +   
Sbjct: 113 RLSTLGNKLPQGITPNITPLTSSASTVLGF---GLTSKTRSLTELRTMVDWTIVPHLLAI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                       + QL  + DP ++ +   +  ++          + G     +  R   
Sbjct: 170 PGVADVNVFGGKVKQLQVQVDPEKMIRYGISLLQVEDAVRKATGVRGGGYIENKNQRIVI 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +       ++                   +V +        R  ++ +   G   ++ 
Sbjct: 230 NTEGQSTTPEKL------------------ALVTLLHKNGQTIRLGDIGKVAYGAAPSIS 271

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                  + V         A   G        +        +  IKL+    R       
Sbjct: 272 AAAINEESGVYLSVQGQLGANTHGVTLAVERALKELEPNLTAEHIKLHQGLFRPANFIEV 331

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S  +    I + LV+ +LF+ +   +   ++  +I L+++  + ++S     L +  +
Sbjct: 332 AISGVRADILIGSVLVITILFLFLFNVRTAFISATAIPLSLLTAIVVMSYFNIGLNIMVL 391

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITAL 471
            G+ + +G  VD  I+  E I    R+N+        +  +        +++  +     
Sbjct: 392 GGLAIALGEVVDDAIIDTENIFRRLRENRLLAQPLPTYQVVFNASMEVRTSVVYATFIVA 451

Query: 472 IATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           +  + L   GG A +      +    +I+ S+F A+++  A+   ++   K+   D   +
Sbjct: 452 LVFLPLLTLGGVAGKLFAPLGLAYIAAIMASLFVALTLTPALCYIMLGNAKLDDTDPPLI 511

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID-FKGGIQLGVLANR 587
             F  I   + ++        +  S +     +  L      +     +G   + + A  
Sbjct: 512 QFFKRIYVKVLMKVDAHYKVVIATSFILIAIGLGTLPLFKSQFIPALHEGHYIMHMTAVP 571

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD-----SVAQTRVLEMVKKKI 642
                      + +               ++ R            S  +  +  +  ++ 
Sbjct: 572 GTSEQESLRIGKKVSETIRKIDGVKSVTQWVGRAPNAADTFGTHYSEFEIEIGAISGEEQ 631

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             I+     + +     +    +   G VGV  + 
Sbjct: 632 RRILADIREELSGEDVDRDGDGVAETGFVGVNFAI 666



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 81/213 (38%), Gaps = 8/213 (3%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 V+ Q           V   +K+    +       +  +  P    E+   G+  
Sbjct: 279 SGVYLSVQGQLGANTHGVTLAVERALKELEPNLTAEHIKLHQGLFRPANFIEVAISGVRA 338

Query: 673 --VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +I S + + I     F    A  + T + L +   +   + F I  N+  +  +   +
Sbjct: 339 DILIGSVLVITILFLFLFNVRTAFISATAIPLSLLTAIVVMSYFNIGLNIMVLGGLAIAL 398

Query: 731 GYSVNDKVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           G  V+D ++    ++ R+R+N  L     +++ + + S+ E     VY +    +  LP+
Sbjct: 399 GEVVDDAIIDTENIFRRLRENRLLAQPLPTYQVVFNASM-EVRTSVVYATFIVALVFLPL 457

Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              GG     FA P+    + A  +S+F+A  +
Sbjct: 458 LTLGGVAGKLFA-PLGLAYIAAIMASLFVALTL 489



 Score = 57.8 bits (137), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 81/240 (33%), Gaps = 10/240 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  +   +   +        +  +          +   E+  +  +E+          
Sbjct: 803  RDVADIVQENGRSKILHAGAKRIQTVTANVSGRDIDSFTSELKTRLNSELTLSPGTYLEF 862

Query: 656  IVGPKISRELIRKGIV--GVIISAIAMLIYIWI-RFKWYFALGAITTLILDITKTLGFFA 712
                + + +   K I+   +   ++ +++YI   R +      A     L I   +    
Sbjct: 863  TGAAEANAKSREKLILQSAIAGVSVLLMLYIAFGRLRNLLLTFANLPFAL-IGGVIAVM- 920

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G   +L ++   +TL G ++ + +++    +  +            I    +E L   
Sbjct: 921  LTGGWISLGSLVGFVTLFGITLRNSIMMASHFQHLVDEENCVWCLETCIR-GASERLPSI 979

Query: 773  VYTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + T++   + +LP+AV  G          A  +  G+V +   ++ I   I+L    +  
Sbjct: 980  LMTALVTALGLLPLAVGSGEPGREIEGPMATIIVGGLVTSTILNLLILPTIMLHFGKFER 1039


>gi|225620231|ref|YP_002721488.1| cation/multidrug efflux pump AcrB [Brachyspira hyodysenteriae WA1]
 gi|225215050|gb|ACN83784.1| AcrB, cation/multidrug efflux pump [Brachyspira hyodysenteriae WA1]
          Length = 1001

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 65/515 (12%), Positives = 156/515 (30%), Gaps = 41/515 (7%)

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
             +    + V   +    +   S +          ++ ++ + + F      +  AD + 
Sbjct: 11  TYDNAGAEEVEKSVTRVIESAVSSVNNVKTIKSKSKESESNVEIEFNWGTDLQTAADDIR 70

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + S L  D     +   +     I+         ++   +    +  Q + ++  
Sbjct: 71  EAIDMIRSSLPDDADNPNISKFSTDSEPIMNIAFFGTDNLASLYDL---VDSQILTRLEQ 127

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E   Q      +   +  + D +RL         +     L N +  G        + +
Sbjct: 128 VEGVAQTEIRGGLKKIICVDIDLNRLNAYSININDIVHTLSLENQNVAGGETYEGVYKYN 187

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  ++  +I  + +      +  K           E  +       +         
Sbjct: 188 IRTTGEFKEVNDIEDVVIMLKNQVYPVKVRDIAYVHEDYEDDSEIVRINGQKA------- 240

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                            +   +  GN       +   +            +   +     
Sbjct: 241 --------------LTIAVTKESGGNIIQIARDVEKRLSTINLPSGVYYQILFNSSDTIK 286

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S      T    A   ++VL + +   +   +   SI ++VI T  L+     T+ + S
Sbjct: 287 NSIHNVLNTVWQGALFAVLVLMIYLWDIRSVFIISISIPVSVITTFILMYFFNITINVIS 346

Query: 417 IAGIVLGIGLAVDSNILVNERI--------------REENRKNQSVFCSLDMGFSRAYST 462
           ++G+VLG+G+ VD++I+V E I               ++     +   S  +G S     
Sbjct: 347 LSGLVLGVGMMVDNSIVVLENIFYYSNYYSKYNINKNDKRTIKINNIKSSIIGTSEVSIA 406

Query: 463 IFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           I  S +T++   +   F     G       IT+ +S+L S+F A++IV  +   + +   
Sbjct: 407 ITASTLTSVCVFLPFLFVKGQMGQMFSDLCITVSISLLTSLFVALTIVPLLASRLNKLNP 466

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554
              +++  +         +     +     + + I
Sbjct: 467 DSKLNLLLIRLENFFNKNLHNNIEKFYVSTLAVVI 501



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 81/216 (37%), Gaps = 6/216 (2%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            +  +              ++  ++K++ +I   S          +  +E   + IV +I
Sbjct: 780 NDKRIIEINASAYGRPINEIITDIRKELNKIYIPSGFSVNFSGDYEDMQEAFVQLIVSLI 839

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           ++ + +   I  +F+ +         +   +   L F    G   N+ +   ++ L+G  
Sbjct: 840 MALVFVYAIIAGQFESYITPFVISLAVPFALFGALIFLYFSGNTLNVYSGIGIIMLVGIV 899

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
           VN+ +V+ D M  N  +    I + +   +S    L   + TS+   + +LPM      G
Sbjct: 900 VNNGIVLIDYM--NRVVIERKIRWDNAALESCKRRLRPVLMTSLTTILGLLPMIFEIGSG 957

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             +    AI +  G++ +   ++ I   +     + 
Sbjct: 958 SEMYRPLAIAVCGGLIFSTMFTLIIIPSVYSSFRNR 993



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 92/267 (34%), Gaps = 14/267 (5%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                + ++    V    VR      +  +   +         + +           ++ 
Sbjct: 198 NDIEDVVIMLKNQVYPVKVRDIAYVHEDYEDDSEIVRINGQKALTIAVTKESGGNIIQIA 257

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWYFA 693
             V+K+++ I   S +    +     + +     ++  +   +  A+L+ +   +     
Sbjct: 258 RDVEKRLSTINLPSGVYYQILFNSSDTIKNSIHNVLNTVWQGALFAVLVLMIYLWDIRSV 317

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR-------- 745
                ++ + +  T      F I  N+ +++ ++  +G  V++ +VV + +         
Sbjct: 318 FIISISIPVSVITTFILMYFFNITINVISLSGLVLGVGMMVDNSIVVLENIFYYSNYYSK 377

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSV---YTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
            N+          + I  SI  T   S+    +++ +    LP     G +   F+  + 
Sbjct: 378 YNINKNDKRTIKINNIKSSIIGTSEVSIAITASTLTSVCVFLPFLFVKGQMGQMFS-DLC 436

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAK 829
             + ++  +S+F+A  I+  +     K
Sbjct: 437 ITVSISLLTSLFVALTIVPLLASRLNK 463


>gi|218249449|ref|YP_002375152.1| protein-export membrane protein SecD [Borrelia burgdorferi ZS7]
 gi|218164637|gb|ACK74698.1| protein-export membrane protein SecD [Borrelia burgdorferi ZS7]
          Length = 586

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 90/211 (42%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +      +  K         I +  I+GP +    I  GI   +++   
Sbjct: 365 NVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASVLALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + ++I + +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFICVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRR---FENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 572



 Score =  115 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 111/502 (22%), Positives = 198/502 (39%), Gaps = 71/502 (14%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGF------------LQMYSDELRSFLKKEGIGV 88
              I LGLDL GG  + + +D                    +      L+  + + G+  
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRSLTFAEREDAIYRIMQILKDRVDRFGLTE 192

Query: 89  FSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
             + +    NKI L     + +  ++  ++         ++ +    L     E      
Sbjct: 193 PKIVREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDESTSLLHRKILEAGSLFS 252

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           + +      +  +                       +      +    G  D S +R  +
Sbjct: 253 IPEIQASMNLPDS-----------------------KQIFPWYVKDSYGVDDESSVRYYV 289

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
              +         N+     +       D    +  V   +++ G          +    
Sbjct: 290 VDASP-------ENSFDGAHIKDAGVSNDPRTGRDTVAFSLDVDGSEKFFKFTQKNVGKS 342

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             VV     +  A   + +T  N+                          +    +F  +
Sbjct: 343 LAVVMEGKIKSVAGIGYAITGGNV--------------------------SIQGDSFDKK 376

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA + +  + P+ + I + R +G  LG+ +I  G  A V  L L+ LF+ V YG  
Sbjct: 377 EAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASVLALCLVFLFICVYYGLS 436

Query: 387 GLVADFSIFL-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
           G+VA FS+ + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ 
Sbjct: 437 GVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREG 496

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +    + + GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++ 
Sbjct: 497 RRFENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLI 556

Query: 506 IVRAMMIFIIRYKKMKSIDINP 527
             R ++ FII  +K K I I+ 
Sbjct: 557 FSRFILEFIISVRKSKFISISW 578


>gi|161898744|ref|YP_073095.2| preprotein translocase subunit SecD [Borrelia garinii PBi]
          Length = 586

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 90/211 (42%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +  +   +  K         I +  I+GP +  + +  GI    ++   
Sbjct: 365 NVSIQGDSFDKKEALDLALVFKTAAFPVDIKIDDLRIIGPTLGAKTVDLGIKSSALALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++ I +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFMCIYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRK---FENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL  I   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILELIISARKSK 572



 Score =  117 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 125/497 (25%), Positives = 218/497 (43%), Gaps = 53/497 (10%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              I LGLDL GG  + + +D         +                            L
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRS---------------------------L 165

Query: 101 SFADSRF-KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +FA+       I   +   +           ++                           
Sbjct: 166 TFAEKEDAIYRIMQILKDRVDRFGLTEPKIAREAGGNKIF-------------------- 205

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           ++   E    R+  +   +  +        L  L  ++          +  + + +    
Sbjct: 206 LDIPGEKDESRVSTLLSGKGNLTFYVVDDELTSLLHKKILEAGSLFSISEIQKNMNLPDS 265

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVE---ISGIHLNGATANFDPKTHKPVVDISFDE 276
                 ++     + D    +Y V D        G H+  A  + DP+T + +V  + D 
Sbjct: 266 KQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDGAHIKDAGVSNDPRTGRDIVAFNLDV 325

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGILAAML 335
            G+ +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + A  LA + 
Sbjct: 326 DGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEALDLALVF 385

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           +  + P+ + I + R +G  LG+ ++  G  +    L L+ LFM + YG  G+VA FS+ 
Sbjct: 386 KTAAFPVDIKIDDLRIIGPTLGAKTVDLGIKSSALALCLVFLFMCIYYGLSGVVAGFSLV 445

Query: 396 L-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +    + + 
Sbjct: 446 IYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREGRKFENAFED 505

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++   R ++  I
Sbjct: 506 GFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRFILELI 565

Query: 515 IRYKKMKSIDINPLSRF 531
           I  +K K I I+  S++
Sbjct: 566 ISARKSKFISISWSSKY 582


>gi|300777451|ref|ZP_07087309.1| CzcA family cobalt/zinc/cadmium efflux RND transporter
           [Chryseobacterium gleum ATCC 35910]
 gi|300502961|gb|EFK34101.1| CzcA family cobalt/zinc/cadmium efflux RND transporter
           [Chryseobacterium gleum ATCC 35910]
          Length = 1447

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 73/675 (10%), Positives = 192/675 (28%), Gaps = 46/675 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD-EDDFVNG 68
           L   +  +GL+      + +  +D  P                   + +        +  
Sbjct: 14  LIIALLVLGLMGIGSYQVTKLPIDAVPDITNNQVQV----------ITMAPSFGATDIER 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    ++  + +          R   + +T+ F D         +V   LQ V + +  
Sbjct: 64  LVTFPIEQANNNISGLKEIRSFSRFGLSLVTIVFEDDVDIYWARQQVAERLQQVQAVIPQ 123

Query: 129 DPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                    + T   +    V+      +   +  E           Q+   +   +   
Sbjct: 124 GIGNPQLGPISTGLGEIFQYVIRPEKGYEKKYNITELRTIQDWIVRRQLLGVKGVAEVSS 183

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
               L Q     +P RL     T   +       N +  G             ++ LV +
Sbjct: 184 FGGKLKQYEIAVNPDRLNAYGITINDVFDALQANNQNTGGAYIEKGPTVLYIRSEGLVGN 243

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
             EI  I +   T +                                             
Sbjct: 244 IEEIKNISIATKTNDVPLSIRDIAEVKPGFATRYGAMTFNDE------------------ 285

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
             ++ A+       + N  I+      A ++       +             +    +  
Sbjct: 286 GEVSGAVVMMLKGENSNQVIKNVKEKIAQVQKTLPKGVVIEPFLDRTKMVNNAIGTVEKN 345

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI----- 420
               A +V+ VL + +   + GL+    I L ++  + +++L G +  L S+  +     
Sbjct: 346 LTEGALIVVFVLVLFLGNIRAGLLVASVIPLAMLFAICMMNLFGVSGNLMSLGALDFGLI 405

Query: 421 ---VLGIGLAVDSNILVNERIREENRKNQSVFCS--LDMGFSRAYSTIFDSNITALIATV 475
               + I  +V   +  N + +      +S   +  +D       S +F   I  ++   
Sbjct: 406 IDGAVIIVESVLHQLTHNSKFKRMFSVGKSEMDAVVIDSAGKMMNSAVFGQIIILIVYLP 465

Query: 476 VLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFF 532
           +L   G  G   +  A T+  ++L +   +++ +  M    + +     ++  + + +  
Sbjct: 466 ILTLQGIEGKMFKPMAQTVAFALLGAFLLSLTYIPMMSAVLLRKRSNKPTLSDSMMKKVE 525

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I   + ++ +R      G+  +  I ++ +L   G  +    +      V        +
Sbjct: 526 KIYLEVLLKLLRVPKIVFGVVAVLFITAVFILSKMGGEFIPSLE-EGDFAVDTRVLPGSN 584

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
           +  +   + +   I    F   +  + ++      +         +   + +    ++  
Sbjct: 585 LTTTIESTQKAAHILKSRFPEVQKVVTKIGSGEVPTDPMPMDASDMMVILKDKKEWTSAS 644

Query: 653 NTEIVGPKISRELIR 667
               +  K+ ++L  
Sbjct: 645 TFPELADKMGKQLQE 659



 Score = 84.0 bits (205), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/243 (18%), Positives = 100/243 (41%), Gaps = 9/243 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L  +++ +   Q         + + +   D   Q+ V E+  K   +I   +    T 
Sbjct: 804  SQLAKVEVKNGPNQIQRENAQRRIVVGFNIKDRDVQSIVEELQGKVDQKIKLPTGYYMTY 863

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +      ++ ++ V I+   + + ++  F     +L   T + L I   + F AL 
Sbjct: 864  GGSFENLNNAKQRLMIAVPIALALIFVMLFFAFKSVKESLLIYTAIPLSIIGGVFFLALR 923

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDLIDKSINETLGRSV 773
            G+ F+++A    + L G +V + +V+     +  +LY + + +   ++       L   +
Sbjct: 924  GMPFSISAGVGFIALFGVAVLNGIVLIS---EFNRLYKSGMRNIVRIVIDGGESRLRPVL 980

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+  A +  +PMA+    G  V    A  +  G++VA   ++F+  P+L    +   K 
Sbjct: 981  MTAFVASLGFIPMALSNGAGAEVQRPLATVVIGGLIVATFLTLFVL-PLLYVNIEKGIKM 1039

Query: 831  ARI 833
             ++
Sbjct: 1040 KKM 1042



 Score = 45.1 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 60/168 (35%), Gaps = 14/168 (8%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + I + + +         L   + + L +   +    LFG+  NL ++ A+    G  +
Sbjct: 349 GALIVVFVLVLFLGNIRAGLLVASVIPLAMLFAICMMNLFGVSGNLMSLGAL--DFGLII 406

Query: 735 NDKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  V++ + +   +   +               ++  S  + +  +V+  +   I  LP+
Sbjct: 407 DGAVIIVESVLHQLTHNSKFKRMFSVGKSEMDAVVIDSAGKMMNSAVFGQIIILIVYLPI 466

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDWRAKN 830
                  G +    A  +AF ++ A   S+ +I     + +     K 
Sbjct: 467 LTLQGIEGKMFKPMAQTVAFALLGAFLLSLTYIPMMSAVLLRKRSNKP 514


>gi|262403861|ref|ZP_06080419.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio sp. RC586]
 gi|262350365|gb|EEY99500.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio sp. RC586]
          Length = 1041

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/608 (11%), Positives = 165/608 (27%), Gaps = 40/608 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ ++   +G L ++      + +D  P       I                  
Sbjct: 11  NNRFLVLIATLFLTLGGLYSVKM----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     +           ++   E   +
Sbjct: 118 APKLPANAKPTLGPDATGVGWIYSYV-LQDKTGKHDLAQLRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 IATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P         
Sbjct: 237 LTSIEDI------------------QSLPLKVTDKGTPLLLGDIADINIGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+      A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVEIVSTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLSEHKNPVNRGLVALY 518

Query: 536 DCIAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             +    ++  +   V    L                    +G +     +   + +   
Sbjct: 519 RPLLNLSLKYPKSMIVLALGLMVSAYYPTSQLGSEFIPPLDEGDLMYMPTSYPGISVGKA 578

Query: 595 RSNLESLQ 602
           R  L+   
Sbjct: 579 RELLQQTN 586



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 78/290 (26%), Gaps = 20/290 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   +  Q     + ++ +       T         +    L     V V I
Sbjct: 816  WVFVDIDGRDLGTYVQEAQQTVAEQLVLPAGYALTWSGQYEYMERAKDRLS----VVVPI 871

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYS 733
            +   +++ ++  F+       I    L +    G           ++      + L G +
Sbjct: 872  TLAIIMLLLYFSFR-RVGEVLIIMATLPLAMVGGLWLMHYLNYNLSIAVGVGFIALAGVA 930

Query: 734  VNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++   +           +      +     + I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHYKKLDAEENHQPLSMKDLTEAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +P+      G  V+   A PM  G+  A   ++ +   I           
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKSKELPK 1040



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 71/217 (32%), Gaps = 13/217 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D+++       +   +   +   G                 + ++ E+ +     + 
Sbjct: 261 DIADINIGPQMRRGISEFNGEGEAVGGVIVMRFGENASQVIDNVKAKLAELQRSLPEGVE 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            +ST   + ++   +     +     ++++ +  L      F    +L    +L + I  
Sbjct: 321 IVSTYDRSTLINAAVENLWKKLAEEFIVVAIVCAL----FLFHIRSSLVIALSLPVGILS 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LI 761
                   GI  N+ ++  +   IG  V+  +V+     +N+  +       D     +I
Sbjct: 377 AFIVMHWQGINANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVI 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            K+  E      ++ +   +S +P+    G     F+
Sbjct: 433 GKAAEEVGAPLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|299529883|ref|ZP_07043314.1| CzcA family heavy metal efflux protein [Comamonas testosteroni S44]
 gi|298722130|gb|EFI63056.1| CzcA family heavy metal efflux protein [Comamonas testosteroni S44]
          Length = 1047

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 89/655 (13%), Positives = 192/655 (29%), Gaps = 54/655 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N  +++   +++   G++ A+     ++ +D FP       +   L   GG       
Sbjct: 10  LHNRLFVLAFAAILMVYGIITAV-----KTPVDVFPDL--NKPLITVLTEAGGM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   + +              + +   F            V   L 
Sbjct: 57  -APEEVEQLVTFPIETALNGMPGVTRVRSMSGVGLSILYAEFDWGTDIYRNRQLVAERLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQ-------NNIDQVISHAIEQSMEIIRQRIDQ 173
            V  +L  D    +   ++     ++L+                 A E +  ++R    +
Sbjct: 116 LVRERLPADVVPVMGPVSSIMGEVMLLALPLNVSEKGASAATPMQAREYADFVLR---PR 172

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   Q +     + QL  E D +R+ Q   T +++         +  G        
Sbjct: 173 LLAVQGVSQVIPIGGEVRQLRVEPDTARMAQFGVTLSQLEAALKGFAGNAGGGF------ 226

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                        ++++             K             G     E   +    P
Sbjct: 227 -------------IDLNSREYLIRHIGRTNKVEDLQSAAVAWRDGRPIRLEQVANVRFAP 273

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                DG    +P +  ++       +   T +    L  + +     I       R   
Sbjct: 274 AMKRGDGGYNGSPAVIVSVQKQPEADTVRVTRDIEQALRELSKGRPEGINEPRALFRQAD 333

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S           A +V IVLF  +L  +  L++  +I L++  T  +   LG ++ 
Sbjct: 334 FIEASIGNVTEALRDGAIMVAIVLFAFLLSARTTLISLVAIPLSLAATALVFHWLGQSIN 393

Query: 414 LPSIAGIVLGIGLAVDSNILVNERI------REENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           + ++ G+ + IG  VD  ++  E I        E          +        S I  + 
Sbjct: 394 VMTLGGLAIAIGELVDDAVVDVENILRRLKQNRELEHPMPTLEVVRKASVEVRSGIVYAT 453

Query: 468 ITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
              ++  V LF      G       I   +SIL SM  ++++   +  +++   K     
Sbjct: 454 AIVVLVFVPLFALPGVEGRLFSPLGIAYIISILASMLVSMTVTPVLCSYLLPRMKRIDHG 513

Query: 525 INPLSRFFLIPDCI--AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +P+ R     D    A  F R++           I    + F          +G + LG
Sbjct: 514 DSPIVRRLKQWDEKLLAWSFPRSKALMATALAAVVIALASVPFFPRAFLPAFNEGSLVLG 573

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           ++ N    L+         +   +             R +         +  +++
Sbjct: 574 MVFNPGTSLAEANRMGSLAETLIMEVPEVTQVGRRTGRAELDEHAEGVHSAEIDV 628



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 70/221 (31%), Gaps = 9/221 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             V+ Q +         + + +++                         I      +   
Sbjct: 290 VSVQKQPEADTVRVTRDIEQALRELSKGRPEGINEPRALFRQADFIEASIGNVTEALRDG 349

Query: 677 AIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           AI + I +          L ++  + L +  T   F   G   N+  +  +   IG  V+
Sbjct: 350 AIMVAIVLFAFLLSARTTLISLVAIPLSLAATALVFHWLGQSINVMTLGGLAIAIGELVD 409

Query: 736 DKVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           D VV    +  R+++N +     +   +++ K+  E     VY +    +  +P+    G
Sbjct: 410 DAVVDVENILRRLKQN-RELEHPMPTLEVVRKASVEVRSGIVYATAIVVLVFVPLFALPG 468

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                F    I     I+ +   S+ +   +  ++     +
Sbjct: 469 VEGRLFSPLGIAYIISILASMLVSMTVTPVLCSYLLPRMKR 509



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 82/218 (37%), Gaps = 7/218 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + ++   D   Q         + +      S     V ++        +P     + E
Sbjct: 792  SAIATVSETDGPNQIGRENGRRRIVVYANTDGSDMSRIVRDIRAAIDRTQLPTGNSISLE 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALF 714
                   +   +   + ++ S   + + ++ R++    AL  +  + L +  ++    L 
Sbjct: 852  GQFQAQEQAAQKIAWLSLM-SLALVFLVLYTRYRSTTLALIIMANIPLALVGSVIAMWLS 910

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  ++ ++   +TL G +V + ++       N+  +      + ++ +   E L   + 
Sbjct: 911  GITLSVASMVGFITLTGIAVRNGILKVSHYI-NLCKFEGEQFGQSMVVRGSLERLTPVLM 969

Query: 775  TSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVA 808
            T++ A  ++ P+ +     G  ++   A+ +  G+V +
Sbjct: 970  TALVAAFALTPLLLSADAAGKEILHPVAVVIFGGLVSS 1007


>gi|15639402|ref|NP_218851.1| preprotein translocase subunit SecF [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025644|ref|YP_001933416.1| preprotein translocase subunit SecF [Treponema pallidum subsp.
           pallidum SS14]
 gi|6647850|sp|O83426|SECF_TREPA RecName: Full=Protein-export membrane protein secF
 gi|3322695|gb|AAC65399.1| protein-export membrane protein (secF) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018219|gb|ACD70837.1| protein-export membrane protein [Treponema pallidum subsp. pallidum
           SS14]
          Length = 420

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 1/207 (0%)

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G                     +                   + VG + S  L+R+ 
Sbjct: 196 PEQGGTALAQSDAPDLVTPQGAVESVVYAALVRAYGADHVVRLAMDFVGSRFSHLLVRQA 255

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           ++ V+ + + + +Y+ +RF+W+FALGAI  L+ D    + F   FG+EFN  ++AA+LT+
Sbjct: 256 LLLVLGALVLIFLYVALRFRWFFALGAIVALVHDACIMVSFMVWFGLEFNSASIAAILTI 315

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IGYS+ND VVV+DR+R    L     S   ++D+S  + L R+V T++   ++ L + V+
Sbjct: 316 IGYSINDTVVVFDRVR-QTILLDPIASVTTVLDRSQTDMLTRTVVTTVTTLLAALMLYVF 374

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIA 816
                  F++ +  G+V    S+I+IA
Sbjct: 375 TEGGSRDFSLALMVGMVSGVYSTIYIA 401


>gi|154251987|ref|YP_001412811.1| acriflavin resistance protein [Parvibaculum lavamentivorans DS-1]
 gi|154155937|gb|ABS63154.1| acriflavin resistance protein [Parvibaculum lavamentivorans DS-1]
          Length = 1030

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 74/680 (10%), Positives = 181/680 (26%), Gaps = 46/680 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  + ++++ M+  +GL     +          P       I          ++ L   
Sbjct: 12  RNWQFTLVVFGMLIAVGL-----SAFNSIPRAEDPDMKGPFAI---------VNVALPGA 57

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    ++  + L                I + F  S   +   D V   +  
Sbjct: 58  DPADIEKLVIRPIEDAINRLDDLDEIKSRAEDGLAIIQVQFDWSTDPDKKYDDVVREINA 117

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L    ++  +        ++V      +   +  +E   ++     D+I       
Sbjct: 118 LRPTLPAGIRRLDINKFRTSLTNVVQVALVSETAPNRVLE---DLADDLTDEIYRVPGVR 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    +  RL  L      ++       +   G        R +     
Sbjct: 175 DAEAWGLPRSEVRVSINFGRLANLGIPVTAVANAVGADASELPGGPIHAGARRFNLKTAG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +I    +                       G           +           
Sbjct: 235 GYDSIEDIRNTVIGYF--------------------GGNIVRVRDVAEVSWATEEATYLG 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + K   +          +                      +     S 
Sbjct: 275 WYNGERAVFVTANQKEAQNVFDVRNGIYEVLDEFEPHLPADVRMERAFDQTVSVSHRLSR 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     + L+ + ++ L  +   +   SI L++ + +ALL   G +L   SIAG+V
Sbjct: 335 LY--LDFAIAVSLVAITLLPLGFRAAGIVMVSIPLSLAMGVALLDFFGFSLNQLSIAGLV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L +GL VD +I+V E I    R+ +  + +     S+    +    +  ++A + L F  
Sbjct: 393 LALGLLVDDSIVVVENIERHLREGKKRYEAAIAATSQISLAVVGCTVVLILAFLPLLFLP 452

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLSRFFLI 534
              G   R   +++  ++  S+  A++I+  +   ++  K        + I       + 
Sbjct: 453 GGAGKFTRSLPVSVLFTVSASLLVALTIIPFLASRLLSDKAHPEGNIFLRIVMRGIHTIY 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              + I     R       ++       +       +         + +   +   L   
Sbjct: 513 RPLLHIALGWPRATTFAAMLVCVTSLALVPRIGFSLFPPADSRQFLVQIETPQGTSLQET 572

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           +  L+ +     +    D   + L R   Q   +           +   ++      +  
Sbjct: 573 KKVLDYVTETLRARPEIDWVISNLGRSNPQIYYNENAREQRANKAEAFAQMAEFDQERTP 632

Query: 655 EIVGPKISRELIRKGIVGVI 674
            +     +      G   V+
Sbjct: 633 ILQDELRAEFNKYPGAQIVL 652



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 76/216 (35%), Gaps = 6/216 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  LV +           +V   V + I  +              +  +E        V
Sbjct: 802  DRQRLVTVTAYTRTGYNTEKVTNEVFEAIASLPKPPGYDFRAGGEIEARQEGFSGLTNAV 861

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIG 731
            +I+   +L  + + F+  F    +   ++ +    G     L G   + TAV   + LIG
Sbjct: 862  LIAIFGILGVLILEFR-SFRTTLVVAGVIPLGIVGGLVGLWLSGYSLSFTAVIGFIALIG 920

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
              +   +++ D      +L    +  ++ ++++        + TSM A   +  +A+ G 
Sbjct: 921  IEIKSSILLVDF---TNQLRRQGVPLKEAVEQAGEIRFLPVLLTSMTAIGGLTALALEGS 977

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +    A  +  G++ +   S  +   + L +    
Sbjct: 978  GLYSPLAFVIIGGLISSTVLSRLVTPAMYLLLAPKE 1013



 Score = 42.8 bits (98), Expect = 0.27,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 88/245 (35%), Gaps = 13/245 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V      ++S        L   +     F        +  +       +  + E++ +  
Sbjct: 255 VRVRDVAEVSWATEEATYLGWYNGERAVFVTANQKEAQNVF-----DVRNGIYEVLDEFE 309

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             +     ++        +S  L R  +   + +S +A+ +   +   +  A   + ++ 
Sbjct: 310 PHLPADVRMERAFDQTVSVSHRLSRLYLDFAIAVSLVAITL---LPLGFRAAGIVMVSIP 366

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           L +   +     FG   N  ++A ++  +G  V+D +VV + + ++++         +  
Sbjct: 367 LSLAMGVALLDFFGFSLNQLSIAGLVLALGLLVDDSIVVVENIERHLREGKKR---YEAA 423

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             + ++     V  ++   ++ LP+    G     F   +   ++   S+S+ +A  I+ 
Sbjct: 424 IAATSQISLAVVGCTVVLILAFLPLLFLPGGAGK-FTRSLPVSVLFTVSASLLVALTIIP 482

Query: 822 FIYDW 826
           F+   
Sbjct: 483 FLASR 487


>gi|152999171|ref|YP_001364852.1| acriflavin resistance protein [Shewanella baltica OS185]
 gi|151363789|gb|ABS06789.1| acriflavin resistance protein [Shewanella baltica OS185]
          Length = 1025

 Score =  130 bits (325), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 80/625 (12%), Positives = 175/625 (28%), Gaps = 45/625 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+  +  +L  M   +GL+        +  +  FP     +            +  +   
Sbjct: 9   RHPIFASVLSIMAVLLGLIA-----FQKLDIQYFPEHTTHSA---------SVNASIAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR-FKE--NIADKVTLF 118
             DF++  +        S + K         + +  +T+ F D     E  N+ +K+   
Sbjct: 55  SADFMSSNVADKLIAAASGIDKVDTMSTDCSEGRCSLTIKFNDDTSDIEYTNLMNKLRSS 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++G+N        K  +   T    S       ++            I +Q + Q+   +
Sbjct: 115 VEGINDFPQSMIDKPTVTDDTSATDSASNIITFVNAGGMEKQAMYDYISQQLVPQLKQVQ 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +++ L    A +       N S        +    S 
Sbjct: 175 GVGAVWGPYGGSQKAVRVWLNPEQMKALNIKAADVVGTLGSYNASFTSGAIKGKSRDFSI 234

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                VE   ++  + +                       G         D +    ++ 
Sbjct: 235 NPLNQVETLEDVKDLVIKV-------------------SEGKIIRVADVADVVMGEESLS 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +             +  +            A ++          +          
Sbjct: 276 PSILSIGGHSAMSLQILPLSNANPVTVASNIKAEIARMQQHLPQGLEMTLAYNQADFIEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S             LV +++ + +   +   +   +I + VI   A++S LG ++ + +I
Sbjct: 336 SIDEGFSALIEAVILVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMSALGFSINVLTI 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E         ++ F +   G       I    +T     + +
Sbjct: 396 LAIILAIGLVVDDAIVVVENCYRHIENGETPFNAAIKGCQEIIFPIIAMTLTLAAVYLPI 455

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
               G      R F+ T+  +++IS   A+++   M  ++      + K    ++     
Sbjct: 456 GLMSGLTADLFRQFSFTLAAAVMISGVVALTLSPMMSAYLINTTEQQPKWFSRVEHVLQQ 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L    +   F R R       +L  +  I       +    +  G I +       V
Sbjct: 516 LNDLYIKELDKWFTRKRLMLGAAVVLIGLAGIAYWQLPKILLPAEDSGFIDVASNGPTGV 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614
                 ++   L             
Sbjct: 576 GRQYHLNHNAELNGVMDEHPAVGAN 600



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 91/258 (35%), Gaps = 8/258 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMV 638
            + V   + + ++ V   +   +    S  +  G     +++      + V     ++  
Sbjct: 250 VIKVSEGKIIRVADVADVVMGEESLSPSILSIGGHSAMSLQILPLSNANPVTVASNIKAE 309

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAI 697
             ++ + +P                  I +G   +I + I + LI +        A   I
Sbjct: 310 IARMQQHLPQGLEMTLAYNQADFIEASIDEGFSALIEAVILVSLIVVLFLGSLRAASIPI 369

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ + +       +  G   N+  + A++  IG  V+D +VV +      +      + 
Sbjct: 370 ITIPVCVIGVFAVMSALGFSINVLTILAIILAIGLVVDDAIVVVENC---YRHIENGETP 426

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +   K   E +   +  ++      LP+ +  G    +   F+  +A  ++++   ++ 
Sbjct: 427 FNAAIKGCQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVMISGVVALT 486

Query: 815 IAAPILLFIYDWRAKNAR 832
           ++  +  ++ +   +  +
Sbjct: 487 LSPMMSAYLINTTEQQPK 504



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 10/289 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       FT+ +   ++        VL    V     ++   S  +     
Sbjct: 730  TFLGSVKAADLHATDGFTYPIQVQVNLDKLSDFKVLNKLYVTSESGQALPLSQFVSIKQT 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  K F+     +    V      + +K  + E +P             + ++L+  
Sbjct: 790  TAESNIKTFMGLDSAELTADVMPGYSTDEIKAYLDEQLPTLLNDAQGFKYNGVVKDLMDS 849

Query: 669  --GIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              G   + +++ + + + +  +F+ +   L  + T+ L I   L    LFG   N+ +  
Sbjct: 850  QAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCIVGALLTLTLFGQSVNIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +      K     +S  +    S    L   + TS+   +S +
Sbjct: 910  GLLTLVGLVTKHGILLVEFAN---KQQDQGLSAIEAARSSAKSRLRPILMTSLTMILSAI 966

Query: 785  PMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+A+  G     + +  + +  G++     S+F+     + + + +AK+
Sbjct: 967  PLALASGPGSLGLANIGLVLVGGLLAGTFFSLFVVPVAYVAMAELKAKD 1015


>gi|262274361|ref|ZP_06052172.1| cobalt-zinc-cadmium resistance protein czcA [Grimontia hollisae CIP
           101886]
 gi|262220924|gb|EEY72238.1| cobalt-zinc-cadmium resistance protein czcA [Grimontia hollisae CIP
           101886]
          Length = 1042

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/631 (11%), Positives = 165/631 (26%), Gaps = 40/631 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N +LV++ ++   +G L ++ N    + +D  P       I                   
Sbjct: 12  NRFLVLVATLFLTLGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F D         +V  +L  V 
Sbjct: 59  QVVEDQVTYPLTTAMLAVPGAETVRGFSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            KL  + K  L    T                     E           ++   E   + 
Sbjct: 119 PKLPPNAKPTLGPDATGVGWVYSYV-LQDKTGQHDLSELRSLQDWFLKYELQTVEGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q   + DP++LR    T  +++      N      +  +            +
Sbjct: 178 ATVGGMVKQYQVQIDPAKLRAYDLTLQQVNMAIQNGNQEAGASVIEIAEAEHMVRTTGYL 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +I                    + I+    G         D    P          
Sbjct: 238 SSVEDI------------------QSLPITVTAKGTPLLLGDIADINIGPQMRRGISEFN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   +   +   + +  I         L          +           +     
Sbjct: 280 GEGEAVGGVIVMRFGENASEVIANVKTKLEELERSLPEGVEIVPTYDRSTLINAAVENLW 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
              A    +V +V  + + + +  LV   S+ + ++    ++   G    + S+ GI + 
Sbjct: 340 KKLAEEFIVVAVVCALFLFHIRSSLVIAISLPVGILSAFIVMHWQGINANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F 
Sbjct: 400 IGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVFA 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  +   AI++V  +M + IR K +             +  
Sbjct: 460 LEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLPEHKNPVNKGLVALYR 519

Query: 537 C-IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             + +     +   V    L +                  +G +         + +   R
Sbjct: 520 PLLNLSLTFPKTMIVVAFALMASAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKAR 579

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
             L+       +          + R +    
Sbjct: 580 ELLQQTNKLIKTVPEVASVWGKIGRAETATD 610



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 82/256 (32%), Gaps = 19/256 (7%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             + + +     +    +        E        +   D       +   ++ + E + L
Sbjct: 784  PNGARIALADVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGSYVVEAQQAVAEQLSL 843

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAML---IYIWIRFKWYFALGAITTLILDIT 705
                +    G     E  ++ +  V+   IA++   +Y+  R +    L  + TL L + 
Sbjct: 844  PAGYSLAWSGQYEYMERAKERLSVVVPITIAIIMLLLYMSFR-RVGEVLIIMATLPLSLV 902

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY--------DR---MRKNMKLYTTS 754
              L      G  F++      + L G +V   V++          R    R+  K   T 
Sbjct: 903  GGLWLMHYLGFNFSVAVGVGFIALAGVAVEIGVIMLVYLNQAWHYRKLHAREE-KQPLTM 961

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASS 811
                D I +     +   + T +   I ++P+      G  V+   A PM  G+  A   
Sbjct: 962  TDLTDAIREGAGLRVRPVMMTVLTVIIGLIPIMFGEGTGSEVMQRIAAPMIGGMASALLL 1021

Query: 812  SIFIAAPILLFIYDWR 827
            ++ +   I     +  
Sbjct: 1022 TLLVLPAIFKLWKNKE 1037



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 80/254 (31%), Gaps = 12/254 (4%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S++    +  ++ T G    ++    + + V A     L    +++            F+
Sbjct: 220 SVIEIAEAEHMVRTTGYLSSVEDIQSLPITVTAKGTPLLLGDIADINIGPQMRRGISEFN 279

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKK--KITEIVPLSTIQNTEIVGPKISRELIRKGI 670
           GE   +  +        A   +  +  K  ++   +P             +    +    
Sbjct: 280 GEGEAVGGVIVMRFGENASEVIANVKTKLEELERSLPEGVEIVPTYDRSTLINAAVENLW 339

Query: 671 VGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             +    I + +      F    +L    +L + I          GI  N+ ++  +   
Sbjct: 340 KKLAEEFIVVAVVCALFLFHIRSSLVIAISLPVGILSAFIVMHWQGINANIMSLGGIAIA 399

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLGRSVYTSMAAFISVL 784
           IG  V+  +V+     +N+  +       D     +I K+  E      ++ +   +S +
Sbjct: 400 IGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFV 455

Query: 785 PMAVWGGSVIGSFA 798
           P+    G     F+
Sbjct: 456 PVFALEGQEGKMFS 469


>gi|295092625|emb|CBK78732.1| Cation/multidrug efflux pump [Clostridium cf. saccharolyticum K10]
          Length = 1018

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/621 (10%), Positives = 174/621 (28%), Gaps = 47/621 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     ++    +   GL   L + L        P  +                     
Sbjct: 8   LKRPVTTILAVLCLIVFGLSSVLSSKLELIPEMEMPMMV--------------VFTTYAG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V+  +    ++    L          ++  + + L +      +   + +     
Sbjct: 54  ASPEDVSELVTKPIEDEIGTLSGVKSVTSYSQENISMVLLEYQYGTDMDKAYNDLKKKTD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L  D ++ ++V     +++ +            A      +  + + +     S 
Sbjct: 114 LLTATLPEDAEEPVVVEFNINDMATMTLAV----NDDTADNLYNYVNEKIVPEFEKISSV 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  E  P ++ Q   T   +       + S                  
Sbjct: 170 ASVDVSGGQEQYVKVELIPEKMDQYHLTMNSLISAIGSADFSLPAGSA------------ 217

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                   + G      +A     T + +  I                NI   L      
Sbjct: 218 --------VVGNQELSVSAGVTFDTMESLKTIPITVGSGDVIHLEDVANIYSNLEDPAGI 269

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          + + S     ++       L+  +  +++ +V + +   +   + 
Sbjct: 270 GRYNGKDTISLGIKKQQEASAGEVSKSVNSTIERLKRSNPNLEIVVVNDSSDSINSSLE- 328

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   + + +L++     K  L+   SI ++++  L L+  +G +L + ++  +
Sbjct: 329 SVMTTMVMAVIISMAILYLFFGDVKASLIVGTSIPISILAALILMRAMGFSLNVITLGSL 388

Query: 421 VLGIGLAVDSNILVNERIREENRKN----QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           VLG+G+ VD++I V E       K      S   +   G     ++I     T  +  + 
Sbjct: 389 VLGVGMMVDNSINVLESCFRAKEKIGNGATSFRDAALEGTRIMIASILGGTATTCVVFLP 448

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFF 532
           L       G   +    T+   ++ S  +AI++V          +K K  +     +   
Sbjct: 449 LALIQGLSGQMFKPLGFTIVFCMVASFISAITVVPLCYTMYRPAEKTKAPLSGAVRAMQD 508

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +     + +        L     +              +G IQ+ +     + + 
Sbjct: 509 QYRKILRFLLPKKKTVMFTSIALLLFSFVLATQIRTELMPATDEGTIQVTMELRPGLTVE 568

Query: 593 VVRSNLESLQIGDISFQNFDG 613
                +  ++    +  +   
Sbjct: 569 KADEIVSKVEEYVAADTDVKD 589



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 92/253 (36%), Gaps = 10/253 (3%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            A   V L+ +           I+ ++ + +            +        ++  +++  
Sbjct: 769  AGNSVALADIADIYFKDSPQSITRKDKEYQVTISGDFVNGTQEEQMDAIETQIYDEEVAP 828

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILD 703
             +  +  +    +   ++ E    G   + ++   + + +  +F+   F+L  +TT+   
Sbjct: 829  RLTENVTRAQNAMDESMAEEFASLGG-AIAMAIFLVFVVMAAQFESPKFSLMVMTTIPFS 887

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +    G   L     ++ ++   L L G  VN  ++  D        Y   +     + +
Sbjct: 888  LIGAFGLLFLADASISMASLLGFLMLFGTVVNSGILYVD----TADQYRAEMDRDTALVE 943

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + T++   +S++PMA+     G  +   A+    G+V +   S+ +  PI 
Sbjct: 944  AGATRLRPILMTTLTTVVSMIPMAMAYGDSGETMQGLALVNVGGLVASTVLSLLML-PIY 1002

Query: 821  LFIYDWRAKNARI 833
              + + + K   +
Sbjct: 1003 YTLMNRKPKYDEL 1015



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 103/313 (32%), Gaps = 9/313 (2%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           I      + +     I  + +  + +             +        ++    I + V 
Sbjct: 187 IPEKMDQYHLTMNSLISAIGSADFSLPAGSAVVGNQELSVSAGVTFDTMESLKTIPITVG 246

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +   + L  V +   +L+      +    +   L   + Q   +   ++ +    +++  
Sbjct: 247 SGDVIHLEDVANIYSNLEDPAGIGRYNGKDTISLGIKKQQEASAGEVSKSVNSTIERLKR 306

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             P   I         I+  L       V+   I+M I          +L   T++ + I
Sbjct: 307 SNPNLEIVVVNDSSDSINSSLESVMTTMVMAVIISMAILYLFFGDVKASLIVGTSIPISI 366

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLI 761
              L      G   N+  + +++  +G  V++ + V +   R ++ +    T  SFRD  
Sbjct: 367 LAALILMRAMGFSLNVITLGSLVLGVGMMVDNSINVLESCFRAKEKIGNGAT--SFRDAA 424

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            +     +   +  +    +  LP+A+     G +       + F +V +  S+I +  P
Sbjct: 425 LEGTRIMIASILGGTATTCVVFLPLALIQGLSGQMFKPLGFTIVFCMVASFISAITVV-P 483

Query: 819 ILLFIYDWRAKNA 831
           +   +Y    K  
Sbjct: 484 LCYTMYRPAEKTK 496


>gi|304317005|ref|YP_003852150.1| protein-export membrane protein SecD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778507|gb|ADL69066.1| protein-export membrane protein SecD [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 412

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 134/383 (34%), Positives = 223/383 (58%), Gaps = 29/383 (7%)

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           + + +    +V   A+ +++ IIR R+D +G+S+  I + GS+RI I++PG  DP ++  
Sbjct: 52  VYVLEQAEGKVTQDAMTRAISIIRNRVDSLGVSQPLIVQQGSNRIRIEIPGVNDPDQVIS 111

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
            LG TA++ F                             + KV ++G  +  + A +   
Sbjct: 112 YLGQTAQLKF--------------------------VGPDGKVILTGADVKDSKAVYQTS 145

Query: 265 T---HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +PVV +  +  GA+ F + T   +G+ +A+VLD + ++APV+ + I  G+A I+G
Sbjct: 146 QTGVQEPVVTLDLNSKGAKAFADATGKFVGQQIAIVLDNKTISAPVVKEQITGGEAVING 205

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
                 A  LA ++R G+LP+ L  VE  +VGA LG  ++     A + GLV+++LFMI 
Sbjct: 206 MKDFTEAKNLANLIRGGALPVTLKQVEYSSVGATLGPSALKASEEAGLYGLVIVLLFMIA 265

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   GL+AD ++ + +++   + +LL  TL LP IAG++L IG+AVD+NI++ ER++EE
Sbjct: 266 FYRLPGLIADIALGIYILINFIVYALLHVTLDLPGIAGMLLSIGMAVDANIIIFERMKEE 325

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  +S+  SLD GF +A+  +FDSNIT LIA  VLFF G G V+GFA+T+ + ++ SMF
Sbjct: 326 MRAGKSIRASLDAGFRKAFVAVFDSNITTLIAAFVLFFMGAGTVKGFALTLIIGVISSMF 385

Query: 502 TAISIVRAMMIFIIRYKKMKSID 524
           TAI++ R ++  ++  +  K+I 
Sbjct: 386 TAITVSRFLLKSVVDTEFTKNIR 408



 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 28/167 (16%), Positives = 73/167 (43%), Gaps = 4/167 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VG  +    ++      +   + +L+++   ++    L A   L + I      +AL
Sbjct: 233 YSSVGATLGPSALKASEEAGLYGLVIVLLFMIAFYRLP-GLIADIALGIYILINFIVYAL 291

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             +  +L  +A +L  IG +V+  +++++RM++ M+      S R  +D    +      
Sbjct: 292 LHVTLDLPGIAGMLLSIGMAVDANIIIFERMKEEMRA---GKSIRASLDAGFRKAFVAVF 348

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +++   I+   +   G   +  FA+ +  G++ +  ++I ++  +L
Sbjct: 349 DSNITTLIAAFVLFFMGAGTVKGFALTLIIGVISSMFTAITVSRFLL 395



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/200 (13%), Positives = 65/200 (32%), Gaps = 7/200 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR+      L  ++  + +       +        P    ++ I LGLDLRGG +++ + 
Sbjct: 2   MRSRGLAKFLSVIVLAVIVAYVAFYGINAGNYSIKP---VQDSIRLGLDLRGGVYVLEQA 58

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVF-SMRQIQNKITLSFADSRFKENIADKVTLFL 119
           +        +      +R+ +   G+     ++Q  N+I +        + +   +    
Sbjct: 59  EGK-VTQDAMTRAISIIRNRVDSLGVSQPLIVQQGSNRIRIEIPGVNDPDQVISYLGQTA 117

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q     +  D K  L     +   ++  +     Q     ++ + +  +   D  G    
Sbjct: 118 QL--KFVGPDGKVILTGADVKDSKAVYQTSQTGVQEPVVTLDLNSKGAKAFADATGKFVG 175

Query: 180 TIQRLGSHRILIQLPGEQDP 199
               +      I  P  ++ 
Sbjct: 176 QQIAIVLDNKTISAPVVKEQ 195


>gi|283796783|ref|ZP_06345936.1| putative acriflavine resistance protein [Clostridium sp. M62/1]
 gi|291075671|gb|EFE13035.1| putative acriflavine resistance protein [Clostridium sp. M62/1]
          Length = 1018

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/621 (10%), Positives = 175/621 (28%), Gaps = 47/621 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     ++    +   GL   L + L        P  +                     
Sbjct: 8   LKRPVTTILAVLCLIVFGLSSVLSSKLELIPEMEMPMMV--------------VFTTYAG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V+  +    ++    L          ++  + + L +      +   + +     
Sbjct: 54  ASPEDVSELVTKPIEDEIGTLSGVKSVTSYSQENISMVLLEYQYGTDMDKAYNDLKKKTD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L  D ++ ++V     +++ +            A      +  + + +     S 
Sbjct: 114 LLTATLPEDAEEPVVVEFNINDMATMTLAV----NDDTADNLYNYVNEKIVPEFEKISSV 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  E  P ++ Q   T   +       + S                  
Sbjct: 170 ASVDVSGGQEQYVKVELIPEKMDQYHLTMNSLISAIGSADFSLPAGSA------------ 217

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                   + G      +A     T + +  I                NI   L      
Sbjct: 218 --------VVGNQELSVSAGVTFDTMESLKTIPITVGSGDVIHLEDVANIYSNLEDPAGI 269

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          + + S     ++       L+  +  +++ +V + +   +   + 
Sbjct: 270 GRYNGKDTISLGIKKQQEASAGEVSKSVNSTIERLKRSNPNLEIVVVNDSSDSINSSLE- 328

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   + + +L++     K  L+   SI ++++  L L+  +G +L + ++  +
Sbjct: 329 SVMTTMVMAVIISMAILYLFFGDVKASLIVGTSIPISILAALILMRAMGFSLNVITLGSL 388

Query: 421 VLGIGLAVDSNILVNERIREENRKN----QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           VLG+G+ VD++I V E       K      S   +   G     ++I     T  +  + 
Sbjct: 389 VLGVGMMVDNSINVLESCFRAKEKIGNGATSFRDAALEGTRIMIASILGGTATTCVVFLP 448

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFF 532
           L       G   +    T+   ++ S  +AI++V          +K K  +     +   
Sbjct: 449 LALIQGLSGQMFKPLGFTIVFCMVASFISAITVVPLCYTMYRPAEKTKAPLSGAVRAMQD 508

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +     + +        L     +              +G IQ+ +     + + 
Sbjct: 509 QYRKILRFLLPKKKTVMFTSIALLLFSFVLATQIRTELMPATDEGTIQVTMELRPGLTVE 568

Query: 593 VVRSNLESLQIGDISFQNFDG 613
                +  ++    +  + + 
Sbjct: 569 KADEIVSKVEEYVAADPDVED 589



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 92/253 (36%), Gaps = 10/253 (3%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            A   V L+ +           I+ ++ + +            +        ++  +++  
Sbjct: 769  AGNSVALADIADIYFKDSPQSITRKDKEYQVTISGDFVNGTQEEQMDAIETQIYDEEVAP 828

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILD 703
             +  +  +    +   ++ E    G   + ++   + + +  +F+   F+L  +TT+   
Sbjct: 829  RLTENVTRAQNAMDESMAEEFASLGG-AIAMAIFLVFVVMAAQFESPKFSLMVMTTIPFS 887

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +    G   L     ++ ++   L L G  VN  ++  D        Y   +     + +
Sbjct: 888  LIGAFGLLFLADASISMASLLGFLMLFGTVVNSGILYVD----TADQYRAEMDRDTALVE 943

Query: 764  SINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +    L   + T++   +S++PMA+     G  +   A+    G+V +   S+ +  PI 
Sbjct: 944  AGATRLRPILMTTLTTVVSMIPMAMAYGDSGETMQGLALVNVGGLVASTVLSLLML-PIY 1002

Query: 821  LFIYDWRAKNARI 833
              + + + K   +
Sbjct: 1003 YTLMNRKPKEDEL 1015



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 103/313 (32%), Gaps = 9/313 (2%)

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           I      + +     I  + +  + +             +        ++    I + V 
Sbjct: 187 IPEKMDQYHLTMNSLISAIGSADFSLPAGSAVVGNQELSVSAGVTFDTMESLKTIPITVG 246

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           +   + L  V +   +L+      +    +   L   + Q   +   ++ +    +++  
Sbjct: 247 SGDVIHLEDVANIYSNLEDPAGIGRYNGKDTISLGIKKQQEASAGEVSKSVNSTIERLKR 306

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
             P   I         I+  L       V+   I+M I          +L   T++ + I
Sbjct: 307 SNPNLEIVVVNDSSDSINSSLESVMTTMVMAVIISMAILYLFFGDVKASLIVGTSIPISI 366

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLI 761
              L      G   N+  + +++  +G  V++ + V +   R ++ +    T  SFRD  
Sbjct: 367 LAALILMRAMGFSLNVITLGSLVLGVGMMVDNSINVLESCFRAKEKIGNGAT--SFRDAA 424

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            +     +   +  +    +  LP+A+     G +       + F +V +  S+I +  P
Sbjct: 425 LEGTRIMIASILGGTATTCVVFLPLALIQGLSGQMFKPLGFTIVFCMVASFISAITVV-P 483

Query: 819 ILLFIYDWRAKNA 831
           +   +Y    K  
Sbjct: 484 LCYTMYRPAEKTK 496


>gi|300940495|ref|ZP_07155066.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 21-1]
 gi|300454695|gb|EFK18188.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 21-1]
          Length = 1047

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     K+     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVAQVFGKTGKAETATDSAPLEMVETTIKLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|115360725|ref|YP_777862.1| acriflavin resistance protein [Burkholderia ambifaria AMMD]
 gi|115286053|gb|ABI91528.1| acriflavin resistance protein [Burkholderia ambifaria AMMD]
          Length = 1076

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/634 (11%), Positives = 163/634 (25%), Gaps = 44/634 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G L  L     +   D FP+                  +V   
Sbjct: 8   LRRPYTFVVLALLIFIAGPLAIL-----RMPTDIFPNIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMAKRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + + +     +           Q+   
Sbjct: 112 NSASILRILPPGTLPPNIITYNASTVPILQLGLSSNTLAEQ--QLYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + D   L+        +       N    G    +     + 
Sbjct: 170 QGAAVPLPFGGKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGTAKIGTREYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     ++    +     +     ++    A  
Sbjct: 230 QMNGSTQTVAAL--------------------NNLPVKTIDGNVVYVHDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S    I+    +   + AG                   
Sbjct: 270 TNIVRVDGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGLPKALHISALGDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   SI L V+ +L  L  LG T+ + ++
Sbjct: 330 AVQGVVREALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSLLALGALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     +   +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLERGAPLEDAILTGSGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G         A  +  +++ S F + ++V  + + ++R K          +R    
Sbjct: 450 FMLTGVARYLFVPLAEAVIFAMVASYFFSRTLVPTLAMVLMRAKGQGRPPRGVFARIARF 509

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +F   R     +                L            G      VD   +
Sbjct: 510 QAAFERRFEAVRLRYRALLSAAISNRRRFAAAFLLACAASTGLFAFAGQDFFPSVDTGEI 569

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           R +L +     I       ++         P + 
Sbjct: 570 RLHLRAPTGTRIEETARLTDEVEARIRTVIPANQ 603



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    ++ L +  +L      G   N+  +  +   +G
Sbjct: 338 ALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSLLALGALGQTINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +              D I     E    +  ++++  I  +PM +  G
Sbjct: 398 ILVDDATVAIENI---THHLERGAPLEDAILTGSGEIAVPTFVSTLSICIVFVPMFMLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  ++ A  +S F +  ++  +
Sbjct: 455 VARYLF-VPLAEAVIFAMVASYFFSRTLVPTL 485



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 60/163 (36%), Gaps = 7/163 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + I+   + + + + F  W   L  +  L   +        +     ++ A+   +  IG
Sbjct: 902  LAIAIALVYLLMVVNFQSWLDPLVIVGGLPASLAGIAWMLFVTRTTLSVPALTGTILCIG 961

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+   L  +  S      ++        V T++A  I +LPMA+   
Sbjct: 962  IATANSILVVNAARE---LIASGASPWQAALEAGFSRFRPVVMTALAMLIGMLPMALGLG 1018

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             GG         +  G+     S++     +  FI+ W  +  
Sbjct: 1019 DGGEQNAPLGRAVIGGLAFGTLSTLLFVPVLFGFIHAWLDRRR 1061


>gi|308050804|ref|YP_003914370.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
 gi|307632994|gb|ADN77296.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
          Length = 1042

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 63/514 (12%), Positives = 149/514 (28%), Gaps = 47/514 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE--- 59
            +  +++++ ++   G L            +  P                  ++ +    
Sbjct: 11  RSRSVLMVFVLLLIAGSLT-----YRSIPKESEPDITIPV-----------IYVSITHDG 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           +  +D     ++    ELRS ++       +  +    + + F      +     V   +
Sbjct: 55  ISPEDAERMLVRPMEQELRS-IEGIDELRATAAEGHASLVMEFDAGFDPKVALADVRDKV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               +KL  D ++  +   T  E + V++      +    + Q   I R   D++     
Sbjct: 114 TLAKAKLPADTEEPTVHEVTLAEENPVITVTLSGPIPERTLVQ---IARTLRDRLESLPE 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            ++          L    DP  L         ++      N             R +   
Sbjct: 171 VLEVEIGGDREDLLEILIDPLLLESYQLEVGDIATLVARSNRLVPAGTMDTGEGRFAIKV 230

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             + E   +I                    +++     G +         + +       
Sbjct: 231 PSVFESLKDI--------------------LELPVKVQGDQVVTVGDIATVRRSFKDPNS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              L            +   +   T+     +    R                       
Sbjct: 271 FARLNGQPALSLEVKKRPGENIISTVAKVKGMMDAARDQWPEALEVTFTGDQSEDVENML 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  +        LV+IV+   +      LV   +I  + +  + +L+ +G T+ +  +  
Sbjct: 331 TDLQNNVLSAILLVVIVVIAALGARSAALV-GLAIPGSFLTGILILATMGLTVNIVVLFA 389

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +++ +G+ VD  I+V E       +  +   +      R    I  S  T L A   L F
Sbjct: 390 LIMAVGMLVDGAIVVTEYADRRMSEGAARKRAYAEAAQRMSWPIIASTATTLAAFAPLLF 449

Query: 480 F---GGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +    G  ++ F +T+  ++  S+  A+  V A+
Sbjct: 450 WPGIMGEFMKFFPLTLIATLTASLLMALIFVPAL 483



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 20/243 (8%), Positives = 77/243 (31%), Gaps = 6/243 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V  ++ V +  + +   S +  +   +        L   +    + ++    ++ + 
Sbjct: 244 PVKVQGDQVVTVGDIATVRRSFKDPNSFARLNGQPALSLEVKKRPGENIISTVAKVKGMM 303

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
               +  P +          +    ++      V+ + + ++I +        A      
Sbjct: 304 DAARDQWPEALEVTFTGDQSEDVENMLTDLQNNVLSAILLVVIVVIAALGARSAALVGLA 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +       +   A  G+  N+  + A++  +G  V+  +VV +      +  +   + + 
Sbjct: 364 IPGSFLTGILILATMGLTVNIVVLFALIMAVGMLVDGAIVVTE---YADRRMSEGAARKR 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++        + ++     +  P+  W    G  +  F + +   +  +   ++   
Sbjct: 421 AYAEAAQRMSWPIIASTATTLAAFAPLLFWPGIMGEFMKFFPLTLIATLTASLLMALIFV 480

Query: 817 API 819
             +
Sbjct: 481 PAL 483



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 88/235 (37%), Gaps = 20/235 (8%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +   ++ ++      V    V+  ++  + E+    +++       +   E  +  +   
Sbjct: 797  DGRRVMTIKADLAPGVQLGAVMPELQALLPELKLHPSVELGFTGENEEQAESQQFLVNAF 856

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA-AVLTLIG 731
             ++   M + +  +F  +Y A   +T ++L     L    + G  FN+      ++ L G
Sbjct: 857  GVALFIMAVILVTQFNSFYQAFLILTAVLLSTAGVLLGLMVAGKPFNIVMCGLGIIALAG 916

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VN+ +V+ D       L    +S  + I ++  + L   + T++   + ++PM +   
Sbjct: 917  IVVNNNIVLIDTYN---VLRAQGLSAHEAILRTGAQRLRPVMLTTITTILGLMPMVLETN 973

Query: 789  ---------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                      GG         A  +A G+  A   ++ +   +L      +A+ A
Sbjct: 974  IDLIHRVVQVGGPSTQWWSQLATTVAGGLAFATVLTLVLTPALLALRAGRQARKA 1028


>gi|289163878|ref|YP_003454016.1| cation/multidrug efflux pump [Legionella longbeachae NSW150]
 gi|288857051|emb|CBJ10866.1| putative cation/multidrug efflux pump [Legionella longbeachae
           NSW150]
          Length = 1055

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 61/512 (11%), Positives = 150/512 (29%), Gaps = 33/512 (6%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
            ++  + LLI  P  + ++  D FP                           D +   + 
Sbjct: 14  FIVMALMLLIIGPLAIMRTPTDIFPDINIPVV---------SVVWTYTGLPPDEMGNRIT 64

Query: 72  MYSDELRSF-LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
              +   +  +              + + L F      +    +VT   Q +   L    
Sbjct: 65  SVFERAVTTTVNDIEHIESESLIGVSVVKLYFQKGVNVDMALSQVTAIAQTMLRNLPPGT 124

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
              L+++     + ++    +   +     + +         Q+   +           +
Sbjct: 125 LPPLILSYKASTVPVLQLVLSSSTIPEQ--KLNDIGNNFIRTQLATVQGASLPYPYGGKI 182

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            Q+  + D   ++    +  +++   +  N         +                VE+ 
Sbjct: 183 RQIMVDLDTQAMQTYGISAKEVNEAILAQNLIIPAGTQKIGEYEYIVKLNGSPLAAVEL- 241

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                               D+       R  +     ++    A   +   +       
Sbjct: 242 -------------------NDVPVKTTPGRILYIRDVGHVRDGFAPQTNIVRVDGHRAVM 282

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                    S    +     L   ++                     +         I A
Sbjct: 283 MSVEKTGNASTLDIVSRVKGLIPKIKEMLPDGLQLSYFADQSIFVTAAIRGVITEGVIAA 342

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            L  +++ + +   +  L+   SI L++I ++ +LS LG T+ + ++ G+ L +G+ VD 
Sbjct: 343 ALTGLMILLFLGSVRSTLIITLSIPLSIITSITILSALGETINIMTLGGLALAVGILVDD 402

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
             +  E I     + + V  ++  G  +       S +   I  V +FF GG A   F +
Sbjct: 403 ATVAIENINWNLEQGKEVEQAILDGAKQIAIPALVSTLCICIVFVPMFFLGGVAQYLF-V 461

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +  +++ +M  +  + R ++  + +Y   K 
Sbjct: 462 PLAEAVIFAMLMSYVLSRTLVATLAKYWLRKH 493



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 80/200 (40%), Gaps = 7/200 (3%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           ++  +K+ + + + LS   +  I      R +I +G++   ++ + +L+++         
Sbjct: 303 LIPKIKEMLPDGLQLSYFADQSIFVTAAIRGVITEGVIAAALTGLMILLFLG---SVRST 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    ++ L I  ++   +  G   N+  +  +   +G  V+D  V  + +  N+     
Sbjct: 360 LIITLSIPLSIITSITILSALGETINIMTLGGLALAVGILVDDATVAIENINWNL---EQ 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
                  I     +    ++ +++   I  +PM   GG     F +P+A  ++ A   S 
Sbjct: 417 GKEVEQAILDGAKQIAIPALVSTLCICIVFVPMFFLGGVAQYLF-VPLAEAVIFAMLMSY 475

Query: 814 FIAAPILLFIYDWRAKNARI 833
            ++  ++  +  +  +   +
Sbjct: 476 VLSRTLVATLAKYWLRKHEL 495



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 86/261 (32%), Gaps = 8/261 (3%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                 + + +        +     +L+    S          ++ +     D    +   
Sbjct: 792  NDLRNIPIGSLTVPSQLQILGAFATLKRTWTSVVESHYNVQPVIDIFATIQDRDLGSVAS 851

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRF-KWYFA 693
            ++ K        +    +  I G   +++    G+  G+  S + + + I I F  W   
Sbjct: 852  DIEKVIEQTKKDVPKGSSVVIRGQIDTKDHAFSGLYWGLAFSILLVYLLIVINFQSWTDP 911

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               IT L   I        L     ++ A+   +  +G +  + +++    R ++    T
Sbjct: 912  FIIITALPAAIAGISWMLFLTHTPLSVPALTGAIMCMGVATANSILIISFARDHLA---T 968

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
              +      ++    L   + T++A  I + PMA+    GG         +  G+  A  
Sbjct: 969  ENNPMQAALEAGKTRLRPVMMTALAMIIGMFPMALGLGDGGEQNAPLGRAVIGGLSFATL 1028

Query: 811  SSIFIAAPILLFIYDWRAKNA 831
            +++F    +   I++   K  
Sbjct: 1029 ATLFFVPSVFYVIHERNLKKK 1049


>gi|209521319|ref|ZP_03270035.1| cation/multidrug efflux pump, AcrB/AcrD/AcrF family, RND
           superfamily [Burkholderia sp. H160]
 gi|209498235|gb|EDZ98374.1| cation/multidrug efflux pump, AcrB/AcrD/AcrF family, RND
           superfamily [Burkholderia sp. H160]
          Length = 770

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/467 (12%), Positives = 136/467 (29%), Gaps = 25/467 (5%)

Query: 81  LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           +        +       + + F      +    +VT   Q     L        ++    
Sbjct: 75  VNDIEHTASTSLNGITVVKIFFQPGANIDEALAQVTALSQSQVRSLPPGITPPFILRYNA 134

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
             + I+    +   +     E           Q+ I       L       Q+  + D  
Sbjct: 135 STVPILRLALSSASLTEQ--ELYDFGNNFLKTQLAIVPGASAPLPYGGKQRQIMVDIDSR 192

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           +L++   +   +       N         +     S       +    +           
Sbjct: 193 KLQERNLSPMDVVNAVGAQNLILPSGTAKIGSTEYSVEMNGSPDSLAGL----------- 241

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
                     +I          +     ++        +   +     +    +     S
Sbjct: 242 ---------NNIPIRTTANGTIYIRDVAHVRDGYQPQTNVVRVNGQRASLLTINKSGNAS 292

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
               ++    +   LR    P                S         I A L  +++ + 
Sbjct: 293 TLDIVDRIKTMMPTLRNLVPPSLNIDPVADQSLFVRASVQGVLREALIAACLTGLMILLF 352

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           +   +  L+   SI L++I ++  LS LG T+ + ++ G+ L +G+ VD   +  E I  
Sbjct: 353 LGNWRATLIIAVSIPLSMITSIIALSALGQTINIMTLGGLALAVGILVDDATVAIENISH 412

Query: 441 ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR---GFAITMGLSIL 497
           +  + +++  ++  G  +     F S ++  I  V +F   G A       A  +  ++L
Sbjct: 413 QLEQGKTLEQAILDGAHQIAIPTFVSTLSICIVFVPMFLLTGVAHYLFIPLAEAVVFAML 472

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
            S F + ++V  + ++++R     +   +  +        +   F R
Sbjct: 473 ASYFFSRTLVPTLAMYLLRRHHKPADSHHAPAPTRNPFMRMHYAFER 519



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 61/159 (38%), Gaps = 4/159 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    ++ L +  ++   +  G   N+  +  +   +G
Sbjct: 338 ALIAACLTGLMILLFLGNWRATLIIAVSIPLSMITSIIALSALGQTINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +           +    I    ++    +  ++++  I  +PM +  G
Sbjct: 398 ILVDDATVAIENI---SHQLEQGKTLEQAILDGAHQIAIPTFVSTLSICIVFVPMFLLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                F IP+A  +V A  +S F +  ++  +  +  + 
Sbjct: 455 VAHYLF-IPLAEAVVFAMLASYFFSRTLVPTLAMYLLRR 492


>gi|167563286|ref|ZP_02356202.1| AcrB/AcrD/AcrF family protein [Burkholderia oklahomensis EO147]
          Length = 1048

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 75/590 (12%), Positives = 162/590 (27%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSQNMFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLDRSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++ ++                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRELSSEEVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTDPAQWNDAIVAYRAGTPVRIRDIGRAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGKRSISVGIYKKPGANTVATVDKIRAKLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+   G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAITVPVSLFGACALMWACGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I     + +    +   G S    TI   +I+ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEEGERPLQAALKGLSETSFTIASISISLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L   G   G   R FA+T+ ++I++S F ++++   M  +++R ++           F 
Sbjct: 450 PLLLMGGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAQRHDGGRAPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                ++  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARMSAGYERALDVALRHRFITLCAFFASVAASVFLYIGIPKGFFPQQ 559



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 8/169 (4%)

Query: 669  GIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              + ++I +  ++ Y+    +   +      ++TL       +    LF  +FNL A+  
Sbjct: 860  ATMPMLILSALIVAYLVLGALYGSFIHPWTILSTLPSAGVGAIATLWLFKYDFNLIALIG 919

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+ LIG    + +++ D           +++  D I  +        + T+M A    +P
Sbjct: 920  VILLIGIVKKNGIMMVD--FAIAATREQNMTSFDAIRNACLLRFRPIMMTTMTALFGAVP 977

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +      G  +       M  G++V+   ++F    I L++     +  
Sbjct: 978  LMFTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLSNRLK 1026



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +          G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAITVPVSLFGACALMWACGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +             K ++ET       S++    +LP+ + G   G +   FA+ +
Sbjct: 413 ---ARHVEEGERPLQAALKGLSETSFTIASISISLVAVLLPLLLMGGIIGRMFREFAVTL 469

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +  I+V+A  S+    P++        ++
Sbjct: 470 SMTIIVSAFVSL-TLTPMMASYLLRAQRH 497


>gi|219685714|ref|ZP_03540527.1| protein-export membrane protein SecD [Borrelia garinii Far04]
 gi|219672764|gb|EED29790.1| protein-export membrane protein SecD [Borrelia garinii Far04]
          Length = 586

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 91/211 (43%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +  +   +  K         I +  I+GP +  + +  GI    ++   
Sbjct: 365 NVSIQGDSFDKKEALDLALVFKTATFPVDIKIDDLRIIGPTLGAKTVDLGIKASALALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++ + +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFMCVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIRGGRK---FENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISARKSK 572



 Score =  117 bits (292), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 128/497 (25%), Positives = 218/497 (43%), Gaps = 53/497 (10%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              I LGLDL GG  + + +D         +                            L
Sbjct: 133 SRIIHLGLDLSGGMSVTVSLDYSSVEKKLGRS---------------------------L 165

Query: 101 SFADSRF-KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +FA+       I   +   +           ++                           
Sbjct: 166 TFAEKEDAIYRIMQILKDRVDRFGLTEPKIAREAGGNKIF-------------------- 205

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           ++   E    R+  +   +  +        L  L  ++          +  + + +    
Sbjct: 206 LDIPGEKDESRVSTLLSGKGNLTFYVVDDELTSLLHKKILEAGSLFSISEIQKNMNLSDS 265

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVE---ISGIHLNGATANFDPKTHKPVVDISFDE 276
                 ++     + D    +Y V D        G H+  A  + DP+T + +V  + D 
Sbjct: 266 KQIFPWYVKDSYGVDDESSVRYYVVDASPENSFDGAHIKDAGVSNDPRTGRDIVAFNLDV 325

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGILAAML 335
            G+ +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + A  LA + 
Sbjct: 326 DGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEALDLALVF 385

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           +  + P+ + I + R +G  LG+ ++  G  A    L L+ LFM V YG  G+VA FS+ 
Sbjct: 386 KTATFPVDIKIDDLRIIGPTLGAKTVDLGIKASALALCLVFLFMCVYYGLSGVVAGFSLV 445

Query: 396 L-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R  +    + + 
Sbjct: 446 IYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIRGGRKFENAFED 505

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++   R ++ FI
Sbjct: 506 GFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRFILEFI 565

Query: 515 IRYKKMKSIDINPLSRF 531
           I  +K K I I+  S++
Sbjct: 566 ISARKSKFISISWSSKY 582


>gi|220913032|ref|YP_002488341.1| acriflavin resistance protein [Arthrobacter chlorophenolicus A6]
 gi|219859910|gb|ACL40252.1| acriflavin resistance protein [Arthrobacter chlorophenolicus A6]
          Length = 1075

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 60/510 (11%), Positives = 146/510 (28%), Gaps = 38/510 (7%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
             L ++I     +  +         +  PS        L           +     + V+
Sbjct: 12  RALIALITIFASVFGVITM-SSLKQELIPSIEFPQITVL---------TSMPGASPEVVD 61

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   + ++       + R   ++IT+ F      +   +++   +      L 
Sbjct: 62  KQVSGPLETALNGVEGLESTSSTSRNGVSQITMVFTYGSNLDRARNQIDRAISNAKRTLP 121

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            D +   +   +  +  IV    + D+      E + ++ R  + ++   +       + 
Sbjct: 122 ADVQPQAIA-GSISDFPIVFLAVSSDKP---LSELNTDLQRLSVPRLQKIDGVRGADVTG 177

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                +     P  +     T A +                         G    ++   
Sbjct: 178 GATQHIEILPRPETMAASGATIASLRDTLSNNGALVPAGTLE------EQGKTLSLQIGS 231

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +  +                 V               +  ++                 
Sbjct: 232 PVDSLD---------------AVKALPVSGAKDGATIGSVADVAIKDDERTSITRTNGAE 276

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                 + K +                L A                    S         
Sbjct: 277 TLAVSVTKKPEGDTVAISHAVRDSLDELAAELGSNARFTPVFDQAPFIEKSIKDLTTEGL 336

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           +  G  + V+ + ++  +  LV   SI L++++T   LS  G +L + ++  + + IG  
Sbjct: 337 LGLGFAVAVILVFLMSARSTLVTAVSIPLSLLITFIGLSATGYSLNILTLGALTIAIGRV 396

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGA 484
           VD +I+V E I+      +    ++          I  S +T +   + + F G   G  
Sbjct: 397 VDDSIVVIENIKRHLTYGEDKVTAILTAIREVAGAITASTLTTVAVFLPIAFVGELAGEL 456

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFI 514
            R FA+T+ +++L S+  +++IV  +  + 
Sbjct: 457 FRPFALTVTIALLASLLVSLTIVPVLAYWF 486



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 90/248 (36%), Gaps = 13/248 (5%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT----RVLEMVKK 640
           A     +  V              +    E   +   +   GD+VA +      L+ +  
Sbjct: 247 AKDGATIGSVADVAIKDDERTSITRTNGAETLAVSVTKKPEGDTVAISHAVRDSLDELAA 306

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
           ++      + + +      K  ++L  +G++G+  +   +L+++         L    ++
Sbjct: 307 ELGSNARFTPVFDQAPFIEKSIKDLTTEGLLGLGFAVAVILVFLM---SARSTLVTAVSI 363

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L +  T    +  G   N+  + A+   IG  V+D +VV + ++   +  T        
Sbjct: 364 PLSLLITFIGLSATGYSLNILTLGALTIAIGRVVDDSIVVIENIK---RHLTYGEDKVTA 420

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
           I  +I E  G    +++      LP+A  G   G +   FA+ +   ++ +   S+ I  
Sbjct: 421 ILTAIREVAGAITASTLTTVAVFLPIAFVGELAGELFRPFALTVTIALLASLLVSLTIVP 480

Query: 818 PILLFIYD 825
            +  +   
Sbjct: 481 VLAYWFLK 488



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 84/244 (34%), Gaps = 12/244 (4%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +         +                       V   V+ ++  +   + +        
Sbjct: 789  ASVEQVDIPVSITASNGQRTAKVSVTPSGSNLGAVSTEVQSRLGGVGLPAGVTAEIGGAT 848

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
                E  R+  + ++ +   + + +   F      L  + ++    T  +    + G+  
Sbjct: 849  TQQAESFRQLGLALLAAIAIVYVIMVATFKSLVQPLILLVSVPFAATGAVALLLVTGVPL 908

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-------TSISFRDLIDKSINETLGR 771
             L ++  +L L+G  V + +V+ D + +  +  T         ++  D I     + L  
Sbjct: 909  GLPSLIGMLMLVGIVVTNAIVLIDLINQYRQPRTGPAGTTLPGMNVADAITHGARQRLRP 968

Query: 772  SVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + T++A   ++ PMA+    GG  I    A+ +  G+V + + ++ +   +   +   R
Sbjct: 969  ILMTALATVFALTPMAMGLTGGGGFISQPLAVVVIGGLVSSTALTLVLVPVLYRLVEGRR 1028

Query: 828  AKNA 831
             + A
Sbjct: 1029 ERKA 1032


>gi|146294341|ref|YP_001184765.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
 gi|145566031|gb|ABP76966.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
          Length = 1032

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 79/625 (12%), Positives = 177/625 (28%), Gaps = 45/625 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+  +  +L  M   +GL+        +  +  FP     +            +  +   
Sbjct: 9   RHPIFASVLSIMAVLLGLIA-----FHKLDIQYFPEHTTHSA---------SVNASIAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS-RFKE--NIADKVTLF 118
             DF++  +        S L K         + +  +T+ F D     E  N+ +K+   
Sbjct: 55  SADFMSSNVADKLVAAASGLDKVDTMSTDCSEGRCSLTIKFKDDTTDIEYTNLMNKLRSS 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++G+N        K  +   T    S       ++            I +Q + Q+   +
Sbjct: 115 VEGINDFPQSMIDKPTVTDDTSATDSASNIITFVNTGGMEKQAMYDYISQQLVPQLKQVQ 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +++ L    A +       N S        +    S 
Sbjct: 175 GVGAVWGPYGGSQKAVRVWLNPEQMKALNIKAADVVGTLGSYNASFTSGAIKGKSRDFSI 234

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                VE   ++  + +                       G         + +    ++ 
Sbjct: 235 NPLNQVETLEDVKDLVIKV-------------------SDGKIIRVSDVAEVVMGEESLS 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +             +  +            A ++          +          
Sbjct: 276 PSLLSIGGHSAMSLQILPLSNANPVTVASNIKAEIARMQKHLPQGLEMNLAYNQADFIEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +             LV +++ + +   +   +   +I + VI   A++S LG ++ + +I
Sbjct: 336 AIDEGFAALIEAVILVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMSALGFSINVLTI 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E         ++ F +   G       I    +T     + +
Sbjct: 396 LAIILAIGLVVDDAIVVVENCYRHIENGETPFNAAINGCQEIIFPIIAMTLTLAAVYLPI 455

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
               G      R F+ T+  +++IS   A+++   M  ++      + K    ++     
Sbjct: 456 GLMSGLTADLFRQFSFTLAAAVIISGMVALTLSPMMSAYLINTTEQQPKWFSRVEGALQQ 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L  + ++  F R R       +L  +  I       +   ++  G I +       V
Sbjct: 516 LNHLYINELSKWFTRKRQMLGMALVLMGLAGIAYWQLPKILLPVEDSGFIDVAANGPTGV 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614
                  +   L             
Sbjct: 576 GREYHLDHNSELNGVIDGHPAVGAN 600



 Score = 81.7 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 91/258 (35%), Gaps = 8/258 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMV 638
            + V   + + +S V   +   +    S  +  G     +++      + V     ++  
Sbjct: 250 VIKVSDGKIIRVSDVAEVVMGEESLSPSLLSIGGHSAMSLQILPLSNANPVTVASNIKAE 309

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAI 697
             ++ + +P     N            I +G   +I + I + LI +        A   I
Sbjct: 310 IARMQKHLPQGLEMNLAYNQADFIEAAIDEGFAALIEAVILVSLIVVLFLGSLRAASIPI 369

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ + +       +  G   N+  + A++  IG  V+D +VV +      +      + 
Sbjct: 370 ITIPVCVIGVFAVMSALGFSINVLTILAIILAIGLVVDDAIVVVENC---YRHIENGETP 426

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +       E +   +  ++      LP+ +  G    +   F+  +A  ++++   ++ 
Sbjct: 427 FNAAINGCQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVIISGMVALT 486

Query: 815 IAAPILLFIYDWRAKNAR 832
           ++  +  ++ +   +  +
Sbjct: 487 LSPMMSAYLINTTEQQPK 504



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 105/289 (36%), Gaps = 10/289 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       FT+ +   ++        V+    V     ++   S  +     
Sbjct: 730  TFLGSVKAADLHATDGFTYPIQVQVNLDKLSDFRVMDKLYVTSESGQALPLSQFVSINQT 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  K F+     +    +      + +K  + E +P             + +EL+  
Sbjct: 790  TAESNIKTFMGLDSAELTADIMPGYSTDEIKAYLDEQLPTLLTDAQGFKYNGLIKELMDS 849

Query: 669  --GIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              G   + +++ + + + +  +F+ +   L  + T+ L I   L    LFG   N+ +  
Sbjct: 850  QAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCIVGALLTLTLFGQSLNIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +      K     +S  +    S    L   + TS+   +S +
Sbjct: 910  GLLTLVGLVTKHGILLVEFAN---KQQLQGLSAIEAAQSSAKSRLRPILMTSLTMILSAI 966

Query: 785  PMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+A+  G     + +  + +  G++     S+F+     + + + +A++
Sbjct: 967  PLALASGPGSLGLANIGLVLVGGLLAGTFFSLFVVPVAYVAMAELKARD 1015


>gi|304411280|ref|ZP_07392895.1| acriflavin resistance protein [Shewanella baltica OS183]
 gi|307306563|ref|ZP_07586306.1| acriflavin resistance protein [Shewanella baltica BA175]
 gi|304350473|gb|EFM14876.1| acriflavin resistance protein [Shewanella baltica OS183]
 gi|306910854|gb|EFN41282.1| acriflavin resistance protein [Shewanella baltica BA175]
          Length = 1025

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/625 (12%), Positives = 175/625 (28%), Gaps = 45/625 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+  +  +L  M   +GL+        +  +  FP     +            +  +   
Sbjct: 9   RHPIFASVLSIMAVLLGLIA-----FQKLDIQYFPEHTTHSA---------SVNASIAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR-FKE--NIADKVTLF 118
             DF++  +        S + K         + +  +T+ F D     E  N+ +K+   
Sbjct: 55  SADFMSSNVADKLIAAASGIDKVDTMSTDCSEGRCSLTIKFNDDTSDIEYTNLMNKLRSS 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++G+N        K  +   T    S       ++            I +Q + Q+   +
Sbjct: 115 VEGINDFPQSMIDKPTVTDDTSATDSASNIITFVNAGGMEKQAMYDYISQQLVPQLKQVQ 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +++ L    A +       N S        +    S 
Sbjct: 175 GVGAVWGPYGGSQKAVRVWLNPEQMKALNIKAADVVGTLGSYNASFTSGAIKGKSRDFSI 234

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                VE   ++  + +                       G         D +    ++ 
Sbjct: 235 NPLNQVETLEDVKDLVIKV-------------------SEGKIIRVADVADVVMGEESLS 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +             +  +            A ++          +          
Sbjct: 276 PSILSIGGHSAMSLQILPLSNANPVTVASNIKAEIARMQQHLPQGLEMTLAYNQADFIEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S             LV +++ + +   +   +   +I + VI   A++S LG ++ + +I
Sbjct: 336 SIDEGFSALIEAVILVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMSALGFSINVLTI 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E         ++ F +   G       I    +T     + +
Sbjct: 396 LAIILAIGLVVDDAIVVVENCYRHIENGETPFNAAIKGCQEIIFPIIAMTLTLAAVYLPI 455

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
               G      R F+ T+  +++IS   A+++   M  ++      + K    ++     
Sbjct: 456 GLMSGLTADLFRQFSFTLAAAVMISGVVALTLSPMMSAYLINTTEQQPKWFSRVEHALQQ 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              +    +   F R R       +L  +  I       +    +  G I +       V
Sbjct: 516 LNDMYIKELDKWFGRKRLMLGAAVVLIGLAGIAYWQLPKILLPAEDSGFIDVASNGPTGV 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614
                 ++   L             
Sbjct: 576 GRQYHLNHNAELNGVMDEHPAVGAN 600



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 91/258 (35%), Gaps = 8/258 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMV 638
            + V   + + ++ V   +   +    S  +  G     +++      + V     ++  
Sbjct: 250 VIKVSEGKIIRVADVADVVMGEESLSPSILSIGGHSAMSLQILPLSNANPVTVASNIKAE 309

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAI 697
             ++ + +P                  I +G   +I + I + LI +        A   I
Sbjct: 310 IARMQQHLPQGLEMTLAYNQADFIEASIDEGFSALIEAVILVSLIVVLFLGSLRAASIPI 369

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ + +       +  G   N+  + A++  IG  V+D +VV +      +      + 
Sbjct: 370 ITIPVCVIGVFAVMSALGFSINVLTILAIILAIGLVVDDAIVVVENC---YRHIENGETP 426

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +   K   E +   +  ++      LP+ +  G    +   F+  +A  ++++   ++ 
Sbjct: 427 FNAAIKGCQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVMISGVVALT 486

Query: 815 IAAPILLFIYDWRAKNAR 832
           ++  +  ++ +   +  +
Sbjct: 487 LSPMMSAYLINTTEQQPK 504



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 10/289 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       FT+ +   ++        VL    V     ++   S  +     
Sbjct: 730  TFLGSVKAADLHATDGFTYPIQVQVNLDKLSDFKVLNKLYVTSESGQALPLSQFVSIKQT 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  K F+     +    V      + +K  + E +P             + ++L+  
Sbjct: 790  TAESNIKTFMGLDSAELTADVMPGYSTDEIKAYLDEQLPTLLNDAQGFKYNGVVKDLMDS 849

Query: 669  --GIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              G   + +++ + + + +  +F+ +   L  + T+ L I   L    LFG   N+ +  
Sbjct: 850  QAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCIVGALLTLTLFGQSVNIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +      K     +S  +    S    L   + TS+   +S +
Sbjct: 910  GLLTLVGLVTKHGILLVEFAN---KQQDQGLSAIEAARSSAKSRLRPILMTSLTMILSAI 966

Query: 785  PMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+A+  G     + +  + +  G++     S+F+     + + + +AK+
Sbjct: 967  PLALASGPGSLGLANIGLVLVGGLLAGTFFSLFVVPVAYVAMAELKAKD 1015


>gi|296161413|ref|ZP_06844220.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
 gi|295888399|gb|EFG68210.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
          Length = 1060

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 154/573 (26%), Gaps = 29/573 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           D+     +  Y   L + +        +       + + F      +    +VT   Q  
Sbjct: 57  DEMEKRIVLNYERGLSTAVNDIEHTESTSLNGIAVVKIFFQPHANIDEALAQVTALSQTQ 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L        ++      + I+    +   +     E           Q+        
Sbjct: 117 LRSLPPGITPPNILRYNASTVPILRLALSSASLTEQ--ELYDFGNNFLKTQLATVPGASA 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L       Q+  + D  +L++   +   +       N         +     S      
Sbjct: 175 PLPYGGKQRQIMVDIDSRKLQERNLSPMDVVNAVTAQNLILPSGTAKIGSTEYSVEMNGS 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +    +                     +I          +     ++        +   
Sbjct: 235 PDSLAGL--------------------NNIPIRSTANGTVYIRDVAHVRDGFQPQTNIVR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +          +     S    ++    +   LR                     S    
Sbjct: 275 VNGQRAALLTINKSGNTSTLEIVDRIKTMMPTLRNLVPASLNIDPVADQSLFVRASVQGV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A L  +++ + +   +  L+   SI L++I ++  LSLLG T+ + ++ G+ L
Sbjct: 335 LREALIAACLTGLMILLFLGNWRATLIIAVSIPLSMITSIIALSLLGETINIMTLGGLAL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E I  +  + +++  ++  G  +       S ++  I  V +F   G
Sbjct: 395 AVGILVDDATVAIENISHQLEQGKTLEQAILDGAHQIAIPTLVSTLSICIVFVPMFLLTG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDINPLSRFFLIP 535
            A       A  +  ++L S F + ++V  +  +++RY               + F    
Sbjct: 455 VAHYLFIPLAEAVVFAMLASYFFSRTLVPTLAKYLLRYHHKPADLHHAPAQTRNPFMRAH 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 F R R                 +    +  G        LG      VD   + 
Sbjct: 515 YAFEGGFERLRERYRVFLEARVARPGLFVTLFLVCCGASMLLMPFLGRDFFPAVDAGTIA 574

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +L +     +       ++      Q  P   
Sbjct: 575 LHLRAKTGMRVEETAVVTDRVDTRIRQLIPAGE 607



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 62/155 (40%), Gaps = 4/155 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    ++ L +  ++   +L G   N+  +  +   +G
Sbjct: 338 ALIAACLTGLMILLFLGNWRATLIIAVSIPLSMITSIIALSLLGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +           +    I    ++    ++ ++++  I  +PM +  G
Sbjct: 398 ILVDDATVAIENI---SHQLEQGKTLEQAILDGAHQIAIPTLVSTLSICIVFVPMFLLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                F IP+A  +V A  +S F +  ++  +  +
Sbjct: 455 VAHYLF-IPLAEAVVFAMLASYFFSRTLVPTLAKY 488



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 78/224 (34%), Gaps = 8/224 (3%)

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
            + +  +++ +    +       D    +  +  +       +P S+          ++  
Sbjct: 823  NATLTHYNAQTTIDIFGTADGRDLGGVSDDIRKIIDDAKADLPKSSTIEVRGQVQTMNDS 882

Query: 665  LIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
                   G++ + + + + I + F  W      IT L   +   +    L     ++ A+
Sbjct: 883  -FSGLFAGLVFAILLVYLLIVVNFQSWLDPFIIITALPGALAGIVWMLFLTHTTLSIPAL 941

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +  IG +  + ++V    R+ +  +    + R  I+          + T++A  I +
Sbjct: 942  TGAIMCIGIATANSILVISFAREQLLEH--GDAARAAIEAGFTR-FRPVLMTALAMVIGM 998

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +PMA+    GG         +  G+ +   +++     +   IY
Sbjct: 999  VPMAIGLGEGGEQNAPLGRAVIGGLTIGTLATLIFVPVVFSMIY 1042


>gi|167645245|ref|YP_001682908.1| acriflavin resistance protein [Caulobacter sp. K31]
 gi|167347675|gb|ABZ70410.1| acriflavin resistance protein [Caulobacter sp. K31]
          Length = 1037

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/551 (10%), Positives = 152/551 (27%), Gaps = 33/551 (5%)

Query: 56  LVLEVDEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           +V+           +   +    ++  + L +      ++    +   + F      E +
Sbjct: 46  VVVTASRPGAAPTELETQVTRLIEDSIAGLGQVRHISSTVGDGYSSTFIEFELGVDHERV 105

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
            + V   +  + S L  D +   +        +++        +     ++S  +     
Sbjct: 106 TNDVRNAMANLQSSLPQDMQIPNVTRIDISGDALITYVVQAPTLTPE--QRSWFVDNDVS 163

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
             +   +   +      +  ++    DP RL     T A++S      N    G    V 
Sbjct: 164 RALLAIKGVGEVNRQGGVSREIQVALDPDRLSARGVTAAQVSQALQSANADLPGGRVTVS 223

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
               +           ++    +                                  ++ 
Sbjct: 224 GSERAIRTLGAAGSVDQLRETRVQL--------------------GNGETVRLGDLGDVE 263

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
              A   +        +           S     E        L      +K+  +    
Sbjct: 264 DRWAEPRNRARFNNQEVVTFNMVRSRGASEVKVAEKVRKEVEKLDKAHPELKIVELTSN- 322

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           V     S         + A L ++V+ + +   +   +A  +I L+++ T A+++ LG +
Sbjct: 323 VKYIEQSYYASLEALGLGALLAVLVVLLFLRDWRATFLAAVAIPLSLLPTFAVMAPLGQS 382

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L   ++  + L +G+ VD  I+  E I    R  +S + +           +  +  T +
Sbjct: 383 LNGVTLLALSLTVGILVDDAIVEIENIVRHMRGGKSPYDAAMEAADEIGLAVVATTFTIV 442

Query: 472 IATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
                + F     G   + FA+   +S+L S+  A  +   M  ++++       D   +
Sbjct: 443 AVFAPVGFMPGIVGQFFKAFALAACISVLFSLLVARMLTPLMGAYMLKAHNKPDADPFWM 502

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
             +      +           +    +     +              +G     V     
Sbjct: 503 GPYLRA---LNWALGHKIIVALLALPILVGSFLLAQKLPFEFQPAADRGRAPFSVELPPG 559

Query: 589 VDLSVVRSNLE 599
             L    + + 
Sbjct: 560 ATLDETDAIVM 570



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 64/150 (42%), Gaps = 6/150 (4%)

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               +   +  +  L L I        L    F+++ +  +L L+G +  + +++ +    
Sbjct: 859  FRSFAHPVTIMAALPLAIGGAFALLVLAHSSFSMSTLIGILMLMGIAAKNSILLVE---Y 915

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSV--IGSFAIPMAF 803
             +      ++ R+ +  + ++     + T++A    ++P+A+ +G  V      AI +  
Sbjct: 916  AIMAMKGGMTRREALVDAAHKRARPIIMTTVAMAAGMMPVALGFGADVEFRAPMAIAVIG 975

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G++ +   S+     + +F+   +  +++I
Sbjct: 976  GLITSTFLSLLYIPVVFVFMDMLKNWSSKI 1005



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 10/135 (7%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W     A   + L +  T    A  G   N   + A+   +G  V+D +V  + +   
Sbjct: 353 RDWRATFLAAVAIPLSLLPTFAVMAPLGQSLNGVTLLALSLTVGILVDDAIVEIENI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL---PMAVWG--GSVIGSFAIPMA 802
           ++      S  D   ++ +E     V T     I  +      + G  G    +FA+   
Sbjct: 410 VRHMRGGKSPYDAAMEAADEIGLAVVAT--TFTIVAVFAPVGFMPGIVGQFFKAFALAAC 467

Query: 803 FGIVVAASSSIFIAA 817
             ++ +   +  +  
Sbjct: 468 ISVLFSLLVARMLTP 482


>gi|50120322|ref|YP_049489.1| cation efflux system protein [Pectobacterium atrosepticum SCRI1043]
 gi|49610848|emb|CAG74293.1| cation efflux system protein [Pectobacterium atrosepticum SCRI1043]
          Length = 1045

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/551 (11%), Positives = 142/551 (25%), Gaps = 48/551 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   +++    +   GLL      L ++ LD  P       I           +    
Sbjct: 10  LKNRLLVLLAALFMATWGLLS-----LQKTPLDALPDLSDVQVI---------IRVSYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          +                + + F D         +V  +L 
Sbjct: 56  KAPQVVENQVTYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFEDGTDPYWARSRVLEYLS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S L  + K +L    T                     +           ++      
Sbjct: 116 QVQSSLPAEAKTSLGPDATGVGWIYEY-ALVDRSGKYSLADLRGFQDWLLKYELKTVPDV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ Q     DP R+R    T  ++       N    G +  +          
Sbjct: 175 AEVASVGGMVKQYQIVVDPERMRTQGITHQQIVTAVQAANQENGGSVLELGEAEYMVRTT 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   +                       +     G     +        P       
Sbjct: 235 GYLKTAQD-------------------FNHVVITTRNGIPVLLQDVATLREGPEMRRGIA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   I   +   +   T+         ++         +           +  
Sbjct: 276 ELNGEGEVAGGIIVMRYGKNALNTLHAVKARLREIQKSLPAGVEIVPTYDRSQLIEHAID 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V ++  + + + +  LVA  S+ L ++    ++   G    + S+ GI
Sbjct: 336 TLSFKLLEEFAVVAVICALFLFHFRSALVAIISLPLGILGAFIIMRYQGVNANIMSLGGI 395

Query: 421 VLGIGLAVDSNILVNERIRE-----------ENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            + IG  VD+ I++ E + +           +  +N   +   +         +F S + 
Sbjct: 396 AIAIGAMVDAAIVMIENMHKVIEQWRHENPGKQPQNNEWWQLAERAAVEVGPALFCSLLI 455

Query: 470 ALIATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             ++ V +F      G      A T   ++ ++    I++V  +M + +R K        
Sbjct: 456 ITLSFVPVFSLEAQEGRMFSPLAFTKTYAMAVAAGLGITLVPVLMGYFVRGKIPDEQANP 515

Query: 527 PLSRFFLIPDC 537
                  +   
Sbjct: 516 INRWLIALYHP 526



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 78/259 (30%), Gaps = 20/259 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       V L+ +     S     +  +N        V L+ +   S        + +
Sbjct: 786  PIVTANGSRVTLAELADVRVSEGPPMLKSENSRLSDWIYVDLRGRDLKSAVDDMQQAVAQ 845

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            +         +                 K  V V  + + + + ++I F +   AL  + 
Sbjct: 846  QITLPEGVSLSWSGQFEYL----ERATEKMKVVVPFTLLIIFVLLYITFNRIKDALLIMA 901

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---------DRMRKNMK 749
            TL   +   +    + G   ++      + L G S    V++           R+     
Sbjct: 902  TLPFALIGGVWLLYILGYNLSVAGAVGFIALAGVSAEFGVIMLLYLNHAVEKHRV---AG 958

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
               +     D I +     +   + T       +LP+      G  ++   A PM  G+V
Sbjct: 959  QALSRQQLMDAIHEGAVLRVRPKMMTVATIMAGLLPIMWGGGSGSEIMQRIAAPMIGGMV 1018

Query: 807  VAASSSIFIAAPILLFIYD 825
             A   S+ +   + L ++ 
Sbjct: 1019 SAPLLSMLVIPAVYLLLHK 1037



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 19/177 (10%)

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
           L    +V VI +           F +  AL AI +L L I          G+  N+ ++ 
Sbjct: 342 LEEFAVVAVICAL--------FLFHFRSALVAIISLPLGILGAFIIMRYQGVNANIMSLG 393

Query: 725 AVLTLIGYSVNDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTS 776
            +   IG  V+  +V+ + M    +  +        +      L +++  E       + 
Sbjct: 394 GIAIAIGAMVDAAIVMIENMHKVIEQWRHENPGKQPQNNEWWQLAERAAVEVGPALFCSL 453

Query: 777 MAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +   +S +P+          F   A    + + VAA   I +   ++ +    +  +
Sbjct: 454 LIITLSFVPVFSLEAQEGRMFSPLAFTKTYAMAVAAGLGITLVPVLMGYFVRGKIPD 510


>gi|284031443|ref|YP_003381374.1| acriflavin resistance protein [Kribbella flavida DSM 17836]
 gi|283810736|gb|ADB32575.1| acriflavin resistance protein [Kribbella flavida DSM 17836]
          Length = 1046

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/659 (13%), Positives = 195/659 (29%), Gaps = 36/659 (5%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNR----ISLGLDLRGGSHLVLEVDED 63
             L   +    L+      L +S +D FP   P       I++GL               
Sbjct: 12  RFLVVALTAF-LMFFGVQQLGRSAVDVFPEFAPPKVEVHTIAIGL-------------GP 57

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   + +  ++  + +           +  +++ L FA+          V   L  + 
Sbjct: 58  TEVEELITVPMEQSLNAIPGVETVRSRSVEQLSQVVLLFAEGTDLLEARQLVAERLASIT 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L       +++        ++    +        ++ SM    +   ++         
Sbjct: 118 PTLPTWAAPPVMLQPLSATSRVLKIGLSPADPSIDMMDLSMTAYWKIRARLLQVPGVANV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                 L  L  + DP+R+ Q   T   +                     + SDGN    
Sbjct: 178 PIWGERLEMLQVQADPARMAQQKVTLETVMTATADA--------LDAGLQQYSDGNFIGR 229

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
              ++ +     G         H  +  +       R+       ++ +    ++   V+
Sbjct: 230 GGFLDGT-EQRLGIRHMPPIVDHDHLAGLPIVTADGRQIRLRDVADLERDHQPLIGDAVI 288

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   I       +            A +R G   I ++    R       +     
Sbjct: 289 NQGDGLMLIVEKLPWANTLDVTRGVEQALAEMRPGLQGIAIDSTIFRPATFIEDAIDNLT 348

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            +  + A L++ +L + +   +  L++  +I L+++  L +L+  G T+    +AG V+ 
Sbjct: 349 RSLILGALLMIAMLALFLYSWRTALISVVAIPLSLLAALLILTARGTTINTMVLAGFVIA 408

Query: 424 IGLAVDSNILVNERIREENRKNQSV------FCSLDMGFSRAYSTIFDSNITALIATVVL 477
           +G  VD  I+  E I    R+++S          +        S I  + +  ++A + +
Sbjct: 409 LGDIVDDAIIGVENIVRRLRQHRSEGSTRSTAKIILEAVLEVRSAIVYATLIEVVAILPI 468

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G   R  A++  L++L SM  A+++  A+ +   R  +      +P+      
Sbjct: 469 FMLAGLSGSFFRPLALSYALALLASMLVALTVTPALALIFFRNPRSLEQRESPVVPPLKR 528

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                +  +  R     +++  +     +L        +         +      D+S+ 
Sbjct: 529 GYDKILTRLVKRPRFGYVAVALTTVLGLILLPLLGQSLLPNFKERDFLMHWLGKPDISLQ 588

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                S  +                      GD        E        +    T+ +
Sbjct: 589 EEVRTSKAVNAELLTIPGVRNAGSHIGNALLGDEPHGVYFGENWISVDPSVDYDETVAS 647



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 61/172 (35%), Gaps = 17/172 (9%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVL 727
            I  +  +   +L+       W  A+    TL   +    G  A +      +L ++   L
Sbjct: 874  IYAIAAAVGILLLLQASYRSWRLAMMTFVTL--PVALVGGVIAAYAGSRVISLGSLVGFL 931

Query: 728  TLIGYSVNDKVVVYDRM----RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            T+ G    + +++        R+    +       +L+ +   E L   + T +   +++
Sbjct: 932  TVFGIVARNGIMLISHCQHLEREEGVPFGP-----ELVIRGATERLVPILMTVLTTGLAL 986

Query: 784  LPMAVWGG----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+   G      +    A+ +  G++ A   ++F+     L     R +  
Sbjct: 987  IPLLASGSIPGQEIEHPMAVVILGGLITATLLNLFVVPAFYLRFAKSRRQRR 1038



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/232 (15%), Positives = 87/232 (37%), Gaps = 4/232 (1%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +         D   G+ +     R + L  V       Q          G+   L+  + 
Sbjct: 242 IRHMPPIVDHDHLAGLPIVTADGRQIRLRDVADLERDHQPLIGDAVINQGDGLMLIVEKL 301

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
              +++  TR +E    ++   +    I +T         + I      +I+ A+ M+  
Sbjct: 302 PWANTLDVTRGVEQALAEMRPGLQGIAIDSTIFRPATFIEDAIDNLTRSLILGALLMIAM 361

Query: 684 IW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           +    + W  AL ++  + L +   L      G   N   +A  +  +G  V+D ++  +
Sbjct: 362 LALFLYSWRTALISVVAIPLSLLAALLILTARGTTINTMVLAGFVIALGDIVDDAIIGVE 421

Query: 743 RMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            + + ++ + +  S R    +I +++ E     VY ++   +++LP+ +  G
Sbjct: 422 NIVRRLRQHRSEGSTRSTAKIILEAVLEVRSAIVYATLIEVVAILPIFMLAG 473



 Score = 37.7 bits (85), Expect = 8.6,   Method: Composition-based stats.
 Identities = 54/531 (10%), Positives = 150/531 (28%), Gaps = 41/531 (7%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            +   +  +  ++   +GL++            +    +        + L+        V+
Sbjct: 539  KRPRFGYVAVALTTVLGLILLPLLGQSLLPNFKERDFLMHWLGKPDISLQEEVRTSKAVN 598

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ- 120
             +      ++     + + L   G     +   +N I++    S   +     V   +  
Sbjct: 599  AELLTIPGVRNAGSHIGNAL--LGDEPHGVYFGENWISV--DPSVDYDETVASVRGVVDG 654

Query: 121  --GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
              GV   +    K+ +    T     I +     D      +EQ      +    +G  +
Sbjct: 655  YPGVFRDVLTYLKERIREVLTGSSDPITIRIFGQD------LEQLRSKAEEINRLVGEVD 708

Query: 179  ST-IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                  +     + Q+  E D +  ++       +          ++             
Sbjct: 709  GVGKHSVDFQDAIPQIRVEVDLAAAQRHGLKPGDVRRAAAWLMAGEEAGDVYTAGKAYDV 768

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                  + +  ++ +                 + I     G  R  +VT  +I     VV
Sbjct: 769  QLWTPPDKRRSVTDLE---------------NLLIDKPGGGQVRLKDVTEISIVSVPNVV 813

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +     +   +   +   S    IE       M       +     E +       
Sbjct: 814  QHEDLFRNIDVGAELDGSRDLGSVVADIEDRLAQVEMPLEFRAEMLGEYTERQ------A 867

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            +           A  +L++L       +  ++   ++ + ++  +         ++L S+
Sbjct: 868  AQQRLLIYAIAAAVGILLLLQASYRSWRLAMMTFVTLPVALVGGVIAAYAGSRVISLGSL 927

Query: 418  AGIVLGIGLAVDSNILVNERIREENRKNQSVF--CSLDMGFSRAYSTIFDSNITALIATV 475
             G +   G+   + I++    +   R+    F    +  G +     I  + +T  +A +
Sbjct: 928  VGFLTVFGIVARNGIMLISHCQHLEREEGVPFGPELVIRGATERLVPILMTVLTTGLALI 987

Query: 476  VLFFFGGGAV----RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             L   G           A+ +   ++ +    + +V A  +   + ++ + 
Sbjct: 988  PLLASGSIPGQEIEHPMAVVILGGLITATLLNLFVVPAFYLRFAKSRRQRR 1038


>gi|332709038|ref|ZP_08429008.1| heavy metal efflux pump [Lyngbya majuscula 3L]
 gi|332352227|gb|EGJ31797.1| heavy metal efflux pump [Lyngbya majuscula 3L]
          Length = 1056

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/560 (12%), Positives = 166/560 (29%), Gaps = 54/560 (9%)

Query: 1   MRNNPWLVILY--SMICCIGLLIALPNF--LPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M N+     +    ++    +++ +  F  + Q  LD FP+  P               +
Sbjct: 1   MLNSILKWSIARRWLVVIGAIIVTVWGFGIVSQMPLDVFPNFAPPQ-----------VEI 49

Query: 57  VLEVDE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114
             E      + V   + M  +   + +        S     + + + F            
Sbjct: 50  QTEAPGLAPEEVESLVTMPVESAINGIPGLTTVRSSSGVGISVVKVIFKWDTNIYQARQL 109

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS--------HAIEQSMEI 166
           VT  LQ   ++L    +   +   +    +I+     ID+ +           +     +
Sbjct: 110 VTERLQQAAARLPEGVESPQISPLSSPIGTILSYAFTIDEDVETGDVPSEIDLMAVRRLV 169

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
            R   +Q+       Q +     + Q     DP++L     + A+++      N +  G 
Sbjct: 170 DRDITNQLLAVAGVTQVIAYGGDVRQYQVLVDPAKLTAFDVSLAEVTEAAAAANTNAAGG 229

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                           VE   ++    +                                
Sbjct: 230 FLISPDKELLIRGIGRVESIEDLEQSVVV--------------------ARNGTPLLLSD 269

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
             ++    A+      L        + + +         +        ++ G        
Sbjct: 270 IADVRIGAALKRGDGSLDGKKAIVVLVNKQPLADTPTVTKAVEAAMEEIKEGLPENVKVT 329

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
           V  R       S    +        +V I+LF+ ++  +  ++   +I L++++ + LL+
Sbjct: 330 VTFRQSDFIDASIKNVRNALRDGIIIVSIILFLFLMNWRTAIITLSAIPLSLLIGMMLLN 389

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAY 460
           L G  +   ++ G+ + IG  VD +I+  E      RKNQ      +    +        
Sbjct: 390 LFGLGINTMTLGGLAVAIGSVVDDSIVDMENCYRGLRKNQQAGNPLNPLQVVYNTSVEVR 449

Query: 461 STIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
            ++  S +   +    +F      G       +   +SI  S F A+++  A+  F++  
Sbjct: 450 VSVLFSTVIIAVVFAPIFTLTGVEGRIFAPMGVAYLVSIFASTFVALTLSPALCAFLLAT 509

Query: 518 KKMKSIDINPLSRFFLIPDC 537
            ++   +         +   
Sbjct: 510 VQLPEEETWVARFSKKLYQP 529



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 100/275 (36%), Gaps = 17/275 (6%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              + +         ++    + +       + L+ V +         I+ +N        
Sbjct: 765  FDLVVWLKAEYRNNLNTISNLLVDTPTGTKIPLAQVANISYGKGPNTINRENVSRLIVVS 824

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              +  +   SV +     + ++                   + S+ L+  G + +I+  I
Sbjct: 825  ANVADRDLGSVVEEIQATVKERVQLPSGYFIQYGGQFESEQRASQNLLVFGTLALIV--I 882

Query: 679  AMLIYIWIRFKWYFALGAITTLILDI--TKTLGFFA--LFGIEFNLTAVAAVLTLIGYSV 734
            A+L+Y  +      ++ A   ++L++    T G F+  L G   ++ ++   +TL G + 
Sbjct: 883  AVLMYFAV-----KSISATVMIMLNLPLALTGGIFSVALGGGIVSVASMVGFITLFGVAT 937

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGG 791
             + +++ D            +    +I +   E L   + T++ + + ++P+ +    G 
Sbjct: 938  RNGLLLVDNYN---NKLAQGMPLSQVIIEGSTERLVAILMTALTSALGMVPLVIGTGAGK 994

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             ++   AI +  G+  + + ++ +   +      +
Sbjct: 995  EILQPLAIVVLGGLFTSTALTLLVLPALYAQFGRF 1029



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 88/247 (35%), Gaps = 7/247 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              +      P+ LS +        +          +   ++  +    D+   T+ +E 
Sbjct: 254 QSVVVARNGTPLLLSDIADVRIGAALKRGDGSLDGKKAIVVLVNKQPLADTPTVTKAVEA 313

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGA 696
             ++I E +P +                I+     +    I + I +      W  A+  
Sbjct: 314 AMEEIKEGLPENVKVTVTFRQSDFIDASIKNVRNALRDGIIIVSIILFLFLMNWRTAIIT 373

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MRKNMKLYT 752
           ++ + L +   +    LFG+  N   +  +   IG  V+D +V  +     +RKN +   
Sbjct: 374 LSAIPLSLLIGMMLLNLFGLGINTMTLGGLAVAIGSVVDDSIVDMENCYRGLRKNQQAGN 433

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                + + + S+   +   +++++   +   P+    G     FA PM    +V+  +S
Sbjct: 434 PLNPLQVVYNTSVEVRVS-VLFSTVIIAVVFAPIFTLTGVEGRIFA-PMGVAYLVSIFAS 491

Query: 813 IFIAAPI 819
            F+A  +
Sbjct: 492 TFVALTL 498


>gi|312196180|ref|YP_004016241.1| protein-export membrane protein SecD [Frankia sp. EuI1c]
 gi|311227516|gb|ADP80371.1| protein-export membrane protein SecD [Frankia sp. EuI1c]
          Length = 604

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 111/522 (21%), Positives = 193/522 (36%), Gaps = 58/522 (11%)

Query: 45  SLGLDLRGGSHLVLEV----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
            LGLDL+GG+ ++L             G +    D +R  +   G+    +++  N+I +
Sbjct: 18  RLGLDLQGGTSVILTPRATQAGQKVNGGAVDKAVDIIRQRVDGLGVAESEVKRNGNQIEI 77

Query: 101 SFAD---SRFKENIADKVTLFLQGVNSKL--------------------NVDPKKNLLVT 137
           S      S     +     L  + V +                                +
Sbjct: 78  SVPGRGRSDVVNLVGQTAELRFRTVYTSGAGTAVVASPTATASVAPAASPSAGSTLAPAS 137

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS------------------ES 179
            T                   A   +      R D +G +                   S
Sbjct: 138 ATPTAAGATTPATPKPTAGGAATPTASATSTARADAVGSALLAAGATTPTPTKAPTPAAS 197

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP-NNSKKGFMFGVRFLRDSDG 238
               + +             +          K     V P                  D 
Sbjct: 198 ASTAVAATASPTPAATASPSASAATPPADVQKKYDALVCPEKVHTTDAPGDWTAACSKDN 257

Query: 239 NQYLVEDKVEISGIHLNGATANFDPK-------THKPVVDISFDEMGARRFFEVTRDNIG 291
               +     + G  +  A A            T + VV +SF   G ++F ++T D I 
Sbjct: 258 TTKYLLMPASVVGTDVKTAQAQLQTTGGTANVSTGQWVVSVSFTGSGQKKFTKLTEDTIN 317

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           KP+A+VLDG  + +  +      G A ISG+F   +A  LA +L+ G+LP+     +  +
Sbjct: 318 KPVAIVLDGV-VQSAPVTNERIPGDASISGSFNQSSAEDLANVLKYGALPLAFEKSQAES 376

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL----SL 407
           +   LG   +  G  A+  GL L++L+    Y   G+V   S+ ++ +L  A +    S 
Sbjct: 377 ISPTLGHTELRGGLLALAIGLGLVILYSFFYYRLLGVVVIASLAVSGLLVYATVCLLGSA 436

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           +G TLTL  IAG++L +G+  DS ++  ERI++E R+ +++  +++  +  A  TI  ++
Sbjct: 437 IGFTLTLAGIAGLILSVGVTADSFVVYFERIKDEVREGRTIGHAVERAWPAARRTILSAD 496

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
             + +A  VL+    G+VRGFA T+GLS L  +       R 
Sbjct: 497 TVSFLAAAVLYIVSIGSVRGFAFTLGLSTLSDVVLVFIFTRP 538



 Score = 85.9 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 77/252 (30%), Gaps = 13/252 (5%)

Query: 576 KGGIQLGVLAN-----RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
            G   + V        +   L+    N     + D   Q+       +       G    
Sbjct: 291 TGQWVVSVSFTGSGQKKFTKLTEDTINKPVAIVLDGVVQSAPVTNERIPGDASISGSFNQ 350

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
            +        K   +         E + P +    +R G++ + I    +++Y +  ++ 
Sbjct: 351 SSAEDLANVLKYGALPLAFEKSQAESISPTLGHTELRGGLLALAIGLGLVILYSFFYYRL 410

Query: 691 YFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +  I +L +          L G        L  +A ++  +G + +  VV ++R++ 
Sbjct: 411 L-GVVVIASLAVSGLLVYATVCLLGSAIGFTLTLAGIAGLILSVGVTADSFVVYFERIKD 469

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            ++      +    ++++        +     +F++   + +     +  FA  +    +
Sbjct: 470 EVRE---GRTIGHAVERAWPAARRTILSADTVSFLAAAVLYIVSIGSVRGFAFTLGLSTL 526

Query: 807 VAASSSIFIAAP 818
                      P
Sbjct: 527 SDVVLVFIFTRP 538


>gi|189461941|ref|ZP_03010726.1| hypothetical protein BACCOP_02608 [Bacteroides coprocola DSM 17136]
 gi|189431335|gb|EDV00320.1| hypothetical protein BACCOP_02608 [Bacteroides coprocola DSM 17136]
          Length = 1034

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 71/611 (11%), Positives = 177/611 (28%), Gaps = 49/611 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   +++   ++   G   A    +        P+ +            GG       
Sbjct: 10  LQNRLLVLVASILLLIGGTYTAFHTEVDVFPDLNAPTVVVMTE-------AGGM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPIETAVNGATGVRRVRSSSTTGFSVVWVEFDWDTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  +     L   +     +++     D      ++           ++  +   
Sbjct: 116 TVGEDLPDNVGNPTLGPQSSILGELLIVGLTADSTSM--LDLRTLADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +      P R++    T  ++       N +  G +          GN+
Sbjct: 174 AQVAVLGGDIKEYQILLHPERMKHYGVTLGEVMAVTRGMNQNTNGGVI------YEYGNE 227

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+V   V    +                   +   +       ++    +G     +   
Sbjct: 228 YIVRGVVSTDNVRQM------------ARSVVKTVDGAPVTLEDIADVQVGAQQPKLGLA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P +   +       +   T +    L  + +     +K++    R       S  
Sbjct: 276 SEKGKPAVLITVTKQPNTGTIELTEKLEAALKDLQKNLPADVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +    A  V+IVLF+ +   +  +++  ++ L++++ + +L  +G ++   S+ G+
Sbjct: 336 NVQESLYEGAIFVVIVLFLFLANTRTTIISLVTLPLSLVVAILVLHYMGLSINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVF--------CSLDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+ +           +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVWKHLRENRMLPAGERKPVLDVVFHASREVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDI 525
           + V LFF  G   R      I   +S+  S   A+++   +  ++     +   +     
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGIAFIVSLFASTVVALTLTPVLCSYLLGGDFKKNGLPKEAF 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +         +       R    G   LF +                 +G   + V +
Sbjct: 516 VAVWMKKYYERGLLWALEHKRTVLGGTIALFIVALGAFFTLGHSFLPPFNEGSFTINVSS 575

Query: 586 NRPVDLSVVRS 596
              + L     
Sbjct: 576 LPGISLEESDK 586



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 81/265 (30%), Gaps = 16/265 (6%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V       +++       +            +    V +      +     + E ++  
Sbjct: 246 VVKTVDGAPVTLEDIADVQVGAQQPKLGLASEKGKPAVLITVTKQPNTGTIELTEKLEAA 305

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-----ISAIAMLIYIWIRFKWYFALGA 696
           + ++                    I   I  V       +   +++           + +
Sbjct: 306 LKDLQKNLPADVKVSTDIFRQSRFIESSIGNVQESLYEGAIFVVIVLFLFLANTRTTIIS 365

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM----RKN-MKLY 751
           + TL L +   +      G+  N  ++  +   IG  V+D +V  + +    R+N M   
Sbjct: 366 LVTLPLSLVVAILVLHYMGLSINTMSLGGMAIAIGSLVDDAIVDVENVWKHLRENRMLPA 425

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
                  D++  +  E     + +++   +S +P+    G       +P+    +V+  +
Sbjct: 426 GERKPVLDVVFHASREVRMPILNSTLIIVVSFVPLFFLSGMEGRML-VPLGIAFIVSLFA 484

Query: 812 SIFIA---APIL--LFIYDWRAKNA 831
           S  +A    P+L    +     KN 
Sbjct: 485 STVVALTLTPVLCSYLLGGDFKKNG 509



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 100/258 (38%), Gaps = 14/258 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     R + LS V     S+    I+ +N   +         +   SV       + +
Sbjct: 782  MIDDAQGRKIPLSYVARVESSMGPNTINRENVKRKIVISANTSGRDLRSVVNDIQTRVNE 841

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K                     SR L+   ++ +++  I +L+Y+  R     +   +  
Sbjct: 842  KIQLPEGYHIEYGGQFESEQAASRTLLLTSLMSIVV--IFLLLYMQFR---NASQSGVIL 896

Query: 700  LILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            L L +    G FAL     E ++ A+   ++L G +  + +++      N       +  
Sbjct: 897  LNLPLALIGGVFALLCTTGEVSIPAIIGFISLFGIATRNGMLLISHY--NTLRDEQGMGL 954

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSSI 813
            R+ I +   + L   + T++++ ++++P+A+ GG     +    A  +  G++ +   + 
Sbjct: 955  RESILRGSLDRLNPILMTALSSALALIPLALRGGLPGNEIQSPMAKVILGGLLTSTFLNA 1014

Query: 814  FIAAPILLFIYDWRAKNA 831
            F+  PI+  + + +  +A
Sbjct: 1015 FVI-PIVYELMNRKKSDA 1031


>gi|293602284|ref|ZP_06684731.1| cation efflux system protein CzcA [Achromobacter piechaudii ATCC
           43553]
 gi|292819313|gb|EFF78347.1| cation efflux system protein CzcA [Achromobacter piechaudii ATCC
           43553]
          Length = 1049

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/594 (9%), Positives = 140/594 (23%), Gaps = 58/594 (9%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----VN 67
            +    G+         +  +D  P                   + +      +      
Sbjct: 16  VLFIAFGMAAVGVYNYSRLAIDAVPDITN-------------VQVQINASAPGYSPLETE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    + + + L          R   ++ T+ F D          V   LQ     L 
Sbjct: 63  QRVTYPIETVMAGLPGLQQTRSLSRYGLSQTTVIFEDGTDIYFARQLVNQRLQEAKESLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISH------AIEQSMEIIRQRIDQIGISESTI 181
                 +   +T      + +                A +           Q+   +   
Sbjct: 123 EGITPVMGPISTGLGEIFLWTVEAKPDAKKEDGSPYTATDLREIQDWVIKPQLRNVKGVT 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         +     D  RL     +   +       N +        +  +       
Sbjct: 183 EVNSIGGYAKEYQVAPDTERLASYGLSLTDIITALERNNANVGAGYIERKGEQYLIRAPG 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +I                     DI       +        ++     +     
Sbjct: 243 QVRSIADIQ--------------------DIVLTARDGQAIRVRDVADVSIGKELRTGAA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +     +        +          I           + + 
Sbjct: 283 TDNGKEVVLGTVFMLIGENSRAVSQAVSKKLGEINKNLPDGVEAITVYDRTDLVDKAIAT 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K      A LV+++LF+ +   +  ++    I L+++ T   +     +  L S+  + 
Sbjct: 343 VKKNLLEGAILVIVILFVFLGNIRAAIITAMVIPLSMLFTFTGMVTYKVSANLMSLGALD 402

Query: 422 LGIGLAVDSNILVNERI-----REENRKNQSVFCS-----LDMGFSRAYSTIFDSNITAL 471
            GI   VD  +++ E         +    + +  S     +      A   +    +  +
Sbjct: 403 FGII--VDGAVVIVENCVRRLSHAQLHHGRPLTRSERFHEVFAAAREARRPLLYGQLIIM 460

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           +  + +F      G      A+T+ +++L +M  +++ V A +   I  K  +       
Sbjct: 461 VVYLPIFALSGVEGRMFHPMALTVVMALLGAMILSVTFVPAAVAMFIGKKVSEKEIRVMA 520

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                    + +   R      G      +C                +G + + 
Sbjct: 521 WARRRYEPLLDLALRRTPLMLGGALGFLLVCGFIATRLGSEFIPNLNEGDMAIQ 574



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/135 (20%), Positives = 54/135 (40%), Gaps = 8/135 (5%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+  GI  ++TA    + L G +V + +V+   +R    L          +
Sbjct: 916  FALTGGILALWIRGIPLSITAAVGFIALCGVAVLNGLVLLSFIR---SLRDEGKPLYTAV 972

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ I   
Sbjct: 973  REGALTRLRPVLMTALVASLGFVPMAIATGTGAEVQRPLATVVIGGIISSTFLTLLILPA 1032

Query: 819  ILLFIYDWRAKNARI 833
            +   ++   A+   +
Sbjct: 1033 LYRLVHHKDAEEEEL 1047



 Score = 42.0 bits (96), Expect = 0.48,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 73/253 (28%), Gaps = 17/253 (6%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++  + IG         +    V L          +R +     K    +  +     E
Sbjct: 266 RDVADVSIGKELRTGAATDNGKEVVLGTVFMLIGENSRAVSQAVSKKLGEINKNLPDGVE 325

Query: 656 IVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +      +L+ K I  V       + + ++I          A+     + L +  T   
Sbjct: 326 AITVYDRTDLVDKAIATVKKNLLEGAILVIVILFVFLGNIRAAIITAMVIPLSMLFTFTG 385

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTTSISFRDL-----IDK 763
              + +  NL ++ A+    G  V+  VV+ +    R +                  +  
Sbjct: 386 MVTYKVSANLMSLGAL--DFGIIVDGAVVIVENCVRRLSHAQLHHGRPLTRSERFHEVFA 443

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           +  E     +Y  +   +  LP+    G    +    A+ +   ++ A   S+      +
Sbjct: 444 AAREARRPLLYGQLIIMVVYLPIFALSGVEGRMFHPMALTVVMALLGAMILSVTFVPAAV 503

Query: 821 LFIYDWRAKNARI 833
                 +     I
Sbjct: 504 AMFIGKKVSEKEI 516


>gi|224534446|ref|ZP_03675022.1| protein-export membrane protein SecD [Borrelia spielmanii A14S]
 gi|224514123|gb|EEF84441.1| protein-export membrane protein SecD [Borrelia spielmanii A14S]
          Length = 586

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 91/211 (43%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +  +   +  K         I +  I+GP +  + I  GI   +++   
Sbjct: 365 NVSIQGDSFDKKEALDLALVFKTAAFPVEIKIDDLRIIGPTLGAKTIDLGIKASVLALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++ + +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFMCVYYGLSGFVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F    +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRK---FEKAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 572



 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 131/505 (25%), Positives = 221/505 (43%), Gaps = 69/505 (13%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGF------------LQMYSDELRSFLKKEGIGV 88
              I LGLDL GG  + + +D                    +      L+  + + G+  
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRSLSFAEKEDAIYRIMQILKDRVDRFGLTE 192

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
             + +                            +   +  +  ++ + T    + ++   
Sbjct: 193 PKIAREAGG----------------------NKIFLDIPGEKDESRVSTLLSGKGNLTFY 230

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                     +     + I +      I+E       S    I     +DP         
Sbjct: 231 VV-----DDESTSILQKKILEAGSLFSIAEIQANMNLSDSKQIFPWYVKDP--------- 276

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
                              +GV            V  +    G H+  A  + DP+T + 
Sbjct: 277 -------------------YGVDDESSVRYYVVDVSPENSFDGAHIKDAGVSNDPRTGRD 317

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIET 327
           +V  + D  G+ +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + 
Sbjct: 318 IVAFNLDVDGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKE 377

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
           A  LA + +  + P+++ I + R +G  LG+ +I  G  A V  L L+ LFM V YG  G
Sbjct: 378 ALDLALVFKTAAFPVEIKIDDLRIIGPTLGAKTIDLGIKASVLALCLVFLFMCVYYGLSG 437

Query: 388 LVADFSIFL-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            VA FS+ + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +
Sbjct: 438 FVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREGR 497

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
               + + GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++  
Sbjct: 498 KFEKAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIF 557

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRF 531
            R ++ FII  +K K I I+  S++
Sbjct: 558 SRFILEFIISVRKSKFISISWSSKY 582


>gi|322433030|ref|YP_004210279.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
 gi|321165257|gb|ADW70961.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
          Length = 1034

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 73/513 (14%), Positives = 145/513 (28%), Gaps = 38/513 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   G +      +       FP+                    L    
Sbjct: 10  RPIATTLLTIAVAIAGFIAFAVLPVAPLPQVDFPTIT--------------VAASLPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D +   +    +     +        S       +TL F  SR  +  A  V   +   
Sbjct: 56  PDIMASSVATPLERQFGHIAGVTEMTSSSTLGTTSVTLQFDLSRNIDGAARDVEAGINAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  +   N          S +L    +            E       +I       Q
Sbjct: 116 RTYLPANLPANPTYRKVNPADSPILV-LGLQSDNYDVPTLYDEASTVIEQRISQITGVGQ 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L  +  E +P++L     +   +                         G    
Sbjct: 175 VTVVGASLPAVRVELNPTQLASYGISLPAVQQVIA--------------------GQNSN 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V      +G       AN           +                ++      V     
Sbjct: 215 VAKGQISNGSTTTDILANDQISKAVAYRPLVVGYHNGGAVRLQDVADVVDSQQTVRQAGF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L        +   +   +   T++        L+A     +  I           S +  
Sbjct: 275 LDGKPSVNMLIFRQPGANIITTVDAVKAALPSLQASIPKGEHLITILDRTLTIRSSVNDI 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  I   LV++V+F+ +   +  L+   ++ +++I T A++ + G +L   S+  + +
Sbjct: 335 ELTLVISVILVILVVFVFLRNVRATLIPAVAVPVSLIGTCAVMYVCGFSLDNLSLMALAI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
             G  VD  I+V E I     +  +   +   G +    T+F  +++ +   + L   G 
Sbjct: 395 ASGFVVDDAIVVMENISRHLEEGYTPVQAALKGAAEIGFTVFSISVSLIAVFIPLLLMGG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMI 512
             G   R FAIT+  +IL+SM  +++    M  
Sbjct: 455 IIGRLFREFAITLSAAILVSMVVSLTTTPMMCS 487



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 10/150 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L     + + +  T     + G   +  ++ A+    G+ V+D +VV + +    +
Sbjct: 356 VRATLIPAVAVPVSLIGTCAVMYVCGFSLDNLSLMALAIASGFVVDDAIVVMENI---SR 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                 +      K   E        S++     +P+ + GG +      FAI ++  I+
Sbjct: 413 HLEEGYTPVQAALKGAAEIGFTVFSISVSLIAVFIPLLLMGGIIGRLFREFAITLSAAIL 472

Query: 807 VAASSSIFIAAPIL---LFIYDWRAKNARI 833
           V+   S+    P++   + I +   ++ R+
Sbjct: 473 VSMVVSL-TTTPMMCSRVLIPESEIEHGRL 501



 Score = 39.7 bits (90), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 88/226 (38%), Gaps = 28/226 (12%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + +    +V+     + + +   ++    ++        +  ++ +      ++ + +
Sbjct: 805  VTVSFNLAPNVSLGEATQKITELQQQLGFPQSVHGQYSGTLEAFQQSLGSEPYLILTAIL 864

Query: 679  AMLIYIWIRFKWY------------FALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            A+ I + I ++               +LGA+  L+           L   E ++ ++  +
Sbjct: 865  AVYIVLGILYESLIHPLTILSTLPSASLGAMLALV-----------LTNTELDVMSIIGI 913

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + LIG    + +++ D            ++ RD I ++        + T+MAA    +P+
Sbjct: 914  ILLIGIVKKNAIMMID--FALNAERNEGMNTRDSIFQASLLRFRPILMTTMAALFGAVPL 971

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            AV    G  +     I +  G++V+   +++    I LF+ + R K
Sbjct: 972  AVGTGIGSELRRPLGISIIGGLIVSQVLTLYTTPVIYLFMDNLRLK 1017


>gi|254448023|ref|ZP_05061487.1| cation efflux system protein CusA [gamma proteobacterium HTCC5015]
 gi|198262449|gb|EDY86730.1| cation efflux system protein CusA [gamma proteobacterium HTCC5015]
          Length = 1065

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 87/698 (12%), Positives = 200/698 (28%), Gaps = 62/698 (8%)

Query: 6   WLVI--LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           W VI  L  +I  I L ++    +P+  LD FP                 +++ + V+ +
Sbjct: 8   WAVINRLLVVIALITLTVSAVFIIPKLNLDAFPDV---------------TNVQVSVNTE 52

Query: 64  ------DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 + V   +    + +   L          +   + +T+ F +          V  
Sbjct: 53  APGLAAEEVEQLITYPIEAVMYALPDVEEVRSISKTGLSGVTVVFKEGTDIYFARQLVFE 112

Query: 118 FLQGVNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            LQ     +        +   T+                   A+             +  
Sbjct: 113 RLQAAKELIPDGVGTPEMGPNTSGLGQVYQYLLVAEPDAGFDAMALRSLNDWVVKLLLIP 172

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           +E     L     + Q     +PSRL     T  ++       N +  G+        + 
Sbjct: 173 AEGVTDVLSFGGEVRQYQVNLNPSRLLAYELTQDEVMMALERNNTNVGGWYM------NR 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              Q ++     +             P        I+  ++         R         
Sbjct: 227 GQEQLVIRGTGWLDHGEKGLEQIRQVPLKTVDGTTITVSDVAQVALGSEIRQGAVTMTRK 286

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
             D +V     +   I   +   +   TI+        +                     
Sbjct: 287 NADDKVENLGEVVSGIVLKRMGANTKATIDGVNARIERINQALPEGVRFEAFYDQADLIT 346

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +         +    ++++L + ++  +   +   SI +++ + L +++  G +  L S
Sbjct: 347 QAVQTVVNALLLAFIFIVVILALFLMNLRATFLVLMSIPISIGIALMVMAWFGLSANLMS 406

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS------------------------- 451
           + GI + IG+ VD ++++ E + +      +   +                         
Sbjct: 407 LGGIAVAIGMLVDGSVVMVENMFKHLTHPDAEHDTQRQSRVDSDDVDPVDVAQDRHGIAL 466

Query: 452 -LDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIV 507
            L          IF +    L+  + LF F G      +  AI++ L++L ++  A+ IV
Sbjct: 467 RLQEAGKEVARPIFFATAIILVVFMPLFSFEGVEAKLFQPMAISIMLAMLSAVLVALIIV 526

Query: 508 RAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
            A+  ++ R    +           L    +A     ++      +++    ++ L    
Sbjct: 527 PALATYLFRKGVRQRDSFVLKPLDRLYRKGLAWAMGHSKMVVGVAAVMVIAAALVLPRLG 586

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                   +G I L V        S + + LE     +     F      L R+      
Sbjct: 587 TEFVPELEEGTINLRVTL---APSSSLDTALEVAPKLEAKLMEFPEVTYALSRIGRAEIG 643

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
              +      +   +  +   ++  N   +   + ++L
Sbjct: 644 GDPEPVNNIEIYIGLKPVPEWTSADNRYELQSLMEQKL 681



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 29/236 (12%), Positives = 86/236 (36%), Gaps = 9/236 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++  + I     Q    +    V +Q         + V ++ +    ++   +       
Sbjct: 829  DVAEVSIASGPPQVRRDDVQRRVVIQANVHGRDMGSVVADIRQVIAEQVDLPTGYSVDIG 888

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--F 714
               +  +   ++  + V +S + + + ++  F        +  + + +    G F+L   
Sbjct: 889  GQFENQQRAQKRLSLVVPVSLVLIALLLYFAFA-SVGQAMLILVNVPLAVIGGVFSLWIS 947

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ +    +TL G +V + VV+ + +    +     +   D +       L   + 
Sbjct: 948  GQYLSVPSSVGFITLFGVAVLNGVVMVESIN---QRIADGLKVSDAVFDGAVSRLRPVLM 1004

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            T++ + + ++PM +    G  +    A  +  G+V A   ++F+   +  +    +
Sbjct: 1005 TAITSALGLIPMLLSNGVGAEIQKPLASVIVGGLVTATFLTLFVLPVLFAWFSKGK 1060



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 31/320 (9%), Positives = 98/320 (30%), Gaps = 27/320 (8%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +  +         L     +         I +  +A   +   + +  +
Sbjct: 222 WYMNRGQEQLVIRGTGWLDHGEKGLEQIRQVPLKTVDGTTITVSDVAQVALGSEIRQGAV 281

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
              +          GE    + L+    ++ A    +    ++I + +P           
Sbjct: 282 TMTRKNADDKVENLGEVVSGIVLKRMGANTKATIDGVNARIERINQALPEGVRFEAFYDQ 341

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE 717
             +  + ++  +  ++++ I +++ + +           + ++ + I   L   A FG+ 
Sbjct: 342 ADLITQAVQTVVNALLLAFIFIVVILALFLMNLRATFLVLMSIPISIGIALMVMAWFGLS 401

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL----------------- 760
            NL ++  +   IG  V+  VV+ + M K++         +                   
Sbjct: 402 ANLMSLGGIAVAIGMLVDGSVVMVENMFKHLTHPDAEHDTQRQSRVDSDDVDPVDVAQDR 461

Query: 761 ------IDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASS 811
                 + ++  E      + +    +  +P+  + G    +    AI +   ++ A   
Sbjct: 462 HGIALRLQEAGKEVARPIFFATAIILVVFMPLFSFEGVEAKLFQPMAISIMLAMLSAVLV 521

Query: 812 SIFIAAPILLFIYDWRAKNA 831
           ++ I   +  +++    +  
Sbjct: 522 ALIIVPALATYLFRKGVRQR 541


>gi|296116700|ref|ZP_06835310.1| putative multidrug resistance protein mdtC [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976912|gb|EFG83680.1| putative multidrug resistance protein mdtC [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 1099

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/523 (13%), Positives = 149/523 (28%), Gaps = 38/523 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +   G++           +   P+      I +     GG+       
Sbjct: 9   RRPVATTLLTVALLIGGVI-----GYMTLPVADLPNVDFP-VIQVQARQPGGT------- 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +             Q +ITL FA SR     A  V   LQ 
Sbjct: 56  -PEEIASSVAAPLERHLGQIADLTEMTSQSSANQARITLQFALSRDINGAARDVEAALQA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            ++ L    ++N          + ++    +      A +            +       
Sbjct: 115 AHADLPTSLRQNPSYFKANPNGAPIMI-LALTSNTRTAPQLYDLASNVLQQHLSQISGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       L  +  E +P  L +       +       N                     
Sbjct: 174 EVEVGGSSLPAVRVEMNPLALYKFGIGFEDVRAALASANAHTP----------------- 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G +    + N      +   D+      +R         +   +  V +  
Sbjct: 217 ---KGFIDHGNYRYTLSTNDQVHNAQAYRDLIVAYHDSRPVRLADVAYVVDGVEDVRNAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +       AI   +A  +   T +        LR                     +   
Sbjct: 274 YVNRQHAVLAIIYAQAGANIIRTNDQIRAEIPALRTALPADVGLANLMDRSTTIRAALED 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV++V+ + +   +  +V    +  ++I T A +  LG +L   S+  + 
Sbjct: 334 TQFTLVLSVVLVVLVVLVFLRSWRITIVPAIVVPTSIIATFAAMKFLGYSLDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           +  G  VD  I+V E I            +  +G      T+    ++ +   + +    
Sbjct: 394 VSTGFVVDDAIVVVENISRHLEAGMGRMQATLLGAREVAFTVISITVSLIAVFLPILLLD 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              G     FA+TM ++I+ISM  ++++   +   ++  +  K
Sbjct: 454 GVAGRLFHEFAMTMSVTIVISMILSLTLTPMITARVLSREGEK 496



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 21/135 (15%), Positives = 46/135 (34%), Gaps = 6/135 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   +     +   I  T       G   +  ++ A+    G+ V+D +VV + +   
Sbjct: 354 RSWRITIVPAIVVPTSIIATFAAMKFLGYSLDNLSLMALTVSTGFVVDDAIVVVENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
            +     +           E     +  +++     LP+ +  G        FA+ M+  
Sbjct: 411 SRHLEAGMGRMQATLLGAREVAFTVISITVSLIAVFLPILLLDGVAGRLFHEFAMTMSVT 470

Query: 805 IVVAASSSIFIAAPI 819
           IV++   S+ +   I
Sbjct: 471 IVISMILSLTLTPMI 485



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 5/144 (3%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +   +      ++TL       L    +FG EF+L A+  V+ LIG    + +++ D  
Sbjct: 930  ILYESYVHPFTILSTLPSAGVGALLALQMFGEEFSLIAMIGVILLIGIVKKNAIMLVD-- 987

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
                     ++S  D I  +        + T+ AA +  LP+     +G  +     I +
Sbjct: 988  FAITAEREDAMSPHDAIRTACLMRFRPIMMTTFAAALGALPLIFGHGYGSELRRPLGIAI 1047

Query: 802  AFGIVVAASSSIFIAAPILLFIYD 825
              G++V+ + +++    + L++  
Sbjct: 1048 VGGLLVSQALTLYTTPVVYLYLDR 1071


>gi|254444297|ref|ZP_05057773.1| RND transporter, HAE1/HME family, permease protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198258605|gb|EDY82913.1| RND transporter, HAE1/HME family, permease protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 1016

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/672 (10%), Positives = 179/672 (26%), Gaps = 39/672 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + + +  +G  +     L Q  +D  P       I L         +V      D ++  
Sbjct: 10  IATAVIALGFALIGAINLRQLPVDFLPDIKYP-LIKL--------SIVWRGATPDDIDRN 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           L    +   + +        S  +   ++ ++F      +          Q     L  +
Sbjct: 61  LADPIERQMASVDGLDYLSSSSLEGLYQLDVNFRYGVDVDVAYQDSLAAFQRALRDLPAE 120

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               +++     ++ +V      +       E    I     D++  ++       +  +
Sbjct: 121 IDPPIIIKADPSQLPVVQVVFESN--RHDLTELRTWIDTWLSDRLLAAQGVAAVDIAGGL 178

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             ++    DP  L +   + A++                              +      
Sbjct: 179 EREIRVLIDPVALEKHGLSLARVEQRLREE--------------------NVEMLGGRVT 218

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                       + +  + + DI      + +        +      +     L      
Sbjct: 219 GAHQETIVRTLGEFRDLESIRDIIVARSASGQLRLRDIARVEDGHEELRLITRLDGRPAV 278

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           +     +A  +   T+ +       L           + E        S +  + T    
Sbjct: 279 KVNIIKQADANTVTTVASLEAALETLAPAFPTGISYALVENQADYIADSIAGVRNTALEA 338

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A LV++  F+ +   +   +    + + +     ++ L G +L + S+ G+V+ IG+ +D
Sbjct: 339 AVLVVLTFFLFLGSPRQVAIIAIVLPVTLAANFFVMKLAGFSLNIFSLGGLVVAIGVLLD 398

Query: 430 SNILVNERIREENRKNQSV--FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA--- 484
           ++ +V E I     +          + G S     +  + +      V      G     
Sbjct: 399 ASTVVLENITRLRTEKPDTPLPEIAESGTSEVGVPLVAATLAFFALFVPFLIVPGMITLL 458

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
            R   + +   +++S   A+ +V  +    +      +   N     +L           
Sbjct: 459 FRELVLIVLSIVILSRLCAVFLVPMLAGRFLHPASQATQGWNERFNLWLRHHYSRSIDFV 518

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANRPVDLSVVRSNLESL 601
                +       I +   +               G I + V       L  + +    +
Sbjct: 519 LGHRLLTFIGFIFILAGGGVAFRHSGSEFLPAVDDGRIMVKVRMPAGAALERMDAINREI 578

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
           +   +                     S         ++    +   ++T      + PK+
Sbjct: 579 EQLALGDPRVATVFTLTGGAVRGLYTSKIGNEGQVDIELVPADQRDITTTAYISELRPKV 638

Query: 662 SRELIRKGIVGV 673
           ++ L     + V
Sbjct: 639 AKLLAPGARLMV 650


>gi|189023001|ref|YP_001932742.1| Acriflavin resistance protein F [Brucella abortus S19]
 gi|254691250|ref|ZP_05154504.1| Acriflavin resistance protein F [Brucella abortus bv. 6 str. 870]
 gi|254732483|ref|ZP_05191061.1| Acriflavin resistance protein F [Brucella abortus bv. 4 str. 292]
 gi|256256436|ref|ZP_05461972.1| Acriflavin resistance protein F [Brucella abortus bv. 9 str. C68]
 gi|260882669|ref|ZP_05894283.1| cation/multidrug efflux pump protein [Brucella abortus bv. 9 str.
           C68]
 gi|189021575|gb|ACD74296.1| Acriflavin resistance protein F [Brucella abortus S19]
 gi|260872197|gb|EEX79266.1| cation/multidrug efflux pump protein [Brucella abortus bv. 9 str.
           C68]
          Length = 323

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 28/329 (8%), Positives = 82/329 (24%), Gaps = 26/329 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                +++  +I   GL+        +  + +FP  +P               + +    
Sbjct: 9   RPRLAIVIAIVITLAGLIAV-----TRIPVAQFPDIVPP-------------QVSVTATY 50

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG-IGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  ++      + + +     +   S     N    +T++F            V  
Sbjct: 51  PGASAETVEAAIAQPIEAQVNGVDDMIYMSSTSGNNGTYTLTVTFKVGSDPNLNTVNVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            ++   + L  +  +  +    +    + +            +  +   +   +D++   
Sbjct: 111 RVRLAEANLPQEVTRLGVTVKKQSSSFLQIITLFSPDSRYDELFLNNYGVINVVDRLARV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q          +    +   L  L  T   +       N        G   + D  
Sbjct: 171 PGVGQAQSFGTFNYSMRIWFNTDALTSLNLTPNDIVNAISSQNVQAAAGRLGAPPMTDQQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q  +  +  ++G            + +     +   ++        + D IG+     
Sbjct: 231 QIQLTLTTQGRLTGAKQFENIII---RANPDGSSVRLKDVARVELAVQSYDTIGRLNGKP 287

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +      Q     + +   + T E
Sbjct: 288 ASVIAVYQAPRLQCGGGSRRRAQRHGTAE 316


>gi|254481089|ref|ZP_05094335.1| RND transporter, HAE1/HME family, permease protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038884|gb|EEB79545.1| RND transporter, HAE1/HME family, permease protein [marine gamma
           proteobacterium HTCC2148]
          Length = 1020

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/667 (11%), Positives = 194/667 (29%), Gaps = 48/667 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L + I   GL+      L +   +  P  +    ++ G              
Sbjct: 9   RRRVLAYMLSAAIILFGLIGLRDIGLDRMP-NVSPPVVTVTTVNPG-------------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +              +++ + F  S+      ++V   +  
Sbjct: 55  SPEVMDSSITSVIESAVNSISAIDNVRSKSVPSVSQVRVRFDLSKDANVAFNEVQAKVNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  + +  ++       I ++      D+ ++   E +    +Q    +       
Sbjct: 115 VINDLPDEAEVPIVAKIDPNAIPVMWLVLRGDRPLN---ELNRIARQQVKKALENISGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + L       ++  + D +R+  L  TT  +       +    G                
Sbjct: 172 EVLVGGGRERKIRVDLDLTRMSALGVTTQDVIVAFGREHIQIPGGYL------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +SG        + +    + + ++                 I   L+      
Sbjct: 219 -------VSGSLEKLLHLDLEYHNIRDLGNLVVLWRDQIPVKLNEIATISDGLSDKRSLA 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                             +    +      L  ++R         IV         G+ S
Sbjct: 272 RFNGREGVAIGIQKVQNANTVAIVGEISRRLDTLVRPALPSGVELIVATDESDIINGTVS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K        L  +V+   +L     L+   +I +++   + ++     T  + +++ +
Sbjct: 332 ALKNHVLEGTILAALVVLFFLLNLPATLIVATAIPVSLAGAVMVMYFGDFTFNVMTLSAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYST-IFDSNITALIATVVLF 478
           +L IG+ VD  I+V E I  +          +   G        I  S     +   V++
Sbjct: 392 LLLIGVVVDDAIVVLENIHRQYEAGTVDAEQAASTGTREVLFPVIAASLTLVCMFATVIY 451

Query: 479 FFG--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL--- 533
             G  G  +R FA+ + + ++ S+F ++++  A+    ++    +S+ I  +   F    
Sbjct: 452 MPGMVGIFMRSFAVVVVVGVIASLFVSLTLTPALCARFLQAPGGESMGIVAIVHKFHEGT 511

Query: 534 -IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                + +       W V ++    + S      +            +  V    P+  S
Sbjct: 512 EWIYKLVLDGCLRFRWSVLVATCLVVTSSGYFVGNLGAEFFPEDDESRFQVQLKTPIGSS 571

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
           V    + S      S      E + +       G        + ++ K  +E        
Sbjct: 572 V--DYMGSKLDEIESLIVEHEEVSHIFSTVGSVGSRDVNEATVNVMLKPKSERQASQRTL 629

Query: 653 NTEIVGP 659
             ++ G 
Sbjct: 630 RNQVRGE 636



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/208 (16%), Positives = 77/208 (37%), Gaps = 15/208 (7%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            S     + E + K       +        +G +       KG +  +     +LIY+ + 
Sbjct: 809  STPDVSLAEALVKFRAVAEEVLPPGYRLELGGQADELEKSKGYLLFVFGTGLLLIYMVLA 868

Query: 688  FKW-YFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYD-- 742
             ++  F   A+  L   +    G FAL   G   ++ ++  ++ LIG    + +++ D  
Sbjct: 869  SQFNSFLQPALVMLAQPLAMVGGVFALWLTGYTLSIYSMMGLILLIGLVTKNSILLVDLI 928

Query: 743  -RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFA 798
             R R+        +     I  +    +   + TS+   +++LP A+    G    G  A
Sbjct: 929  NRYREQ------GMDTLSAIRAACPRRMRPVLMTSLTVVLAMLPAALGVGVGAGQYGPLA 982

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDW 826
            + +  G+V +   ++ +       +  W
Sbjct: 983  VAVIGGVVSSTLLTLVVIPVAYSLLAPW 1010



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/132 (18%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 693 ALGAITTLILDITKTLGFFAL-FG-IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
               I    + ++       + FG   FN+  ++A+L LIG  V+D +VV + + +  + 
Sbjct: 356 PATLIVATAIPVSLAGAVMVMYFGDFTFNVMTLSALLLLIGVVVDDAIVVLENIHRQYEA 415

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
              ++           E L   +  S+        +    G V   + SFA+ +  G++ 
Sbjct: 416 G--TVDAEQAASTGTREVLFPVIAASLTLVCMFATVIYMPGMVGIFMRSFAVVVVVGVIA 473

Query: 808 AASSSIFIAAPI 819
           +   S+ +   +
Sbjct: 474 SLFVSLTLTPAL 485


>gi|297583787|ref|YP_003699567.1| acriflavin resistance protein [Bacillus selenitireducens MLS10]
 gi|297142244|gb|ADH99001.1| acriflavin resistance protein [Bacillus selenitireducens MLS10]
          Length = 1161

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 76/605 (12%), Positives = 181/605 (29%), Gaps = 42/605 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + ++  ++   +G +      L    L   P   P   +              +  
Sbjct: 10  RRPVFTLVSMTLFLLLGFVS-----LTNIPLKLIPDIDPPIAV---------VVTSYDQA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +   S ++       +  +  + + L F+ +   E++ + +   +  
Sbjct: 56  GPQEVVDRVTTPMENSLSTIQGLNNISSTSSEGSSLVLLEFSWTTSIEDVENDIVQRMNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L         +     +I I+    +    +    +   E++    +++   +   
Sbjct: 116 --TPLPSGAGNPQFLKFDPSQIPIIQLSLS---NLGDDNDNFSELVNDLENELLRIDGIG 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   + ++    D   L     T  ++       N +  G +        S    +
Sbjct: 171 NIDLLGDAIEEIDIRLDQQLLEDHNLTQQEVVQTLQSHNVTAPGGVVSNNGSDISTRILF 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    ++                    + ++ D             ++      +    
Sbjct: 231 ELNSLEDVEN------------------IVLTVDPESEDEITLADVGDVSISPEPIDTIT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIET-AGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                         ++  +           L  +L           +          + +
Sbjct: 273 RTNQEDAILMNVQQQSDANTANVARAFTERLDELLEEDRYSDIEQAILFNQGEYVDEAIA 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      + +IVLF+ +   K  L+   +I  +VI+T  LL     +L + ++ G+
Sbjct: 333 SVALALVAGGLIAMIVLFLFLRNFKTPLLIGIAIPFSVIVTFVLLYFTNFSLNIMTLGGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            LGIG+ VD+ I+V E I       +S   +   G S   + I  S +T +   + + F 
Sbjct: 393 ALGIGMLVDNAIVVIENIYRHLNMKKSPKQAALDGASEVATAITASTLTTVSVFLPVVFI 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R FA+T+  S+L S+  A+++V  +    ++            SRF    + 
Sbjct: 453 SGIVGNLFREFALTVAFSLLASLLVALTVVPMLAGKWLKTPTEDIEQKREKSRFVQTFER 512

Query: 538 IAIQFMRAR-FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            A   +R R        +L    +  +            +G  Q+ +       +     
Sbjct: 513 SARWSLRHRFMVIFLTVLLLVAGAFGISTVGVQFLPATDEGFFQIEIENEAGTPIETTFE 572

Query: 597 NLESL 601
           N+E +
Sbjct: 573 NVEEI 577



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/229 (12%), Positives = 69/229 (30%), Gaps = 8/229 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +   +   + L+ V     S +  D   +    +   +   Q    ++    R      
Sbjct: 244 TVDPESEDEITLADVGDVSISPEPIDTITRTNQEDAILMNVQQQSDANTANVARAFTERL 303

Query: 640 KKITEIV--PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
            ++ E               G  +   +    +  V    IAM++       +   L   
Sbjct: 304 DELLEEDRYSDIEQAILFNQGEYVDEAIASVALALVAGGLIAMIVLFLFLRNFKTPLLIG 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +   +  T           N+  +  +   IG  V++ +VV + +    +      S 
Sbjct: 364 IAIPFSVIVTFVLLYFTNFSLNIMTLGGLALGIGMLVDNAIVVIENI---YRHLNMKKSP 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVL-PMAVWG--GSVIGSFAIPMAF 803
           +       +E       +++      L  + + G  G++   FA+ +AF
Sbjct: 421 KQAALDGASEVATAITASTLTTVSVFLPVVFISGIVGNLFREFALTVAF 469



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 26/214 (12%), Positives = 82/214 (38%), Gaps = 7/214 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               ++             + ++V   +           +     ++  + I    + +I+
Sbjct: 803  EESIQFTLTYSTGNTLNEINDLVTDTVDSYGLPDETSISYTGDQQLLEDAISDLTLALIL 862

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + + +  +F+   +    + T+ L +        +     ++TA+  ++ L+G  V
Sbjct: 863  AVVFVYLVMAAQFESLRYPFVIMFTVPLVVIGVAIALTVTRTPVSITAIIGIIVLVGIVV 922

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
            N+ +V+ D +    +     +   D I + + +     + T+    +++ P+A+    G 
Sbjct: 923  NNAIVLVDYIN---QRKLAGMKSMDAIVRGVKDRARPILMTASTTILALFPLALGFGEGS 979

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +    AI +  G++ A   ++F+   +  F+  
Sbjct: 980  EIQQPMAITVIGGMISATFLTLFLIPVLYSFLDK 1013


>gi|56459575|ref|YP_154856.1| Co/Zn/Cd efflux system membrane component [Idiomarina loihiensis
           L2TR]
 gi|56178585|gb|AAV81307.1| Probable Co/Zn/Cd efflux system membrane component [Idiomarina
           loihiensis L2TR]
          Length = 1033

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/589 (11%), Positives = 161/589 (27%), Gaps = 40/589 (6%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             ++  +GL       L Q+ LD  P       I                     V   +
Sbjct: 15  MVLLLFLGLAFWAWQSLQQTKLDAIPDLSEVQVI---------VKTNYPGQAPAVVEEQV 65

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
                 +   + K            + + + F D         +V  +L    S+L    
Sbjct: 66  TYPLSSVMLSVPKATSVRAFSFFGDSYVYVIFEDGTDPYWARSRVNEYLDQAQSQLPDQV 125

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           +  L    +             +    +  E +         ++   +   +      ++
Sbjct: 126 RPELGPDASGIGWVYQY-ALVDETNQLNLGELTRLQNWFLKQELQSVQGVAEIATVGGMV 184

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
                   P  L +   T  ++       NN   G +  +            ++   +I 
Sbjct: 185 ETYQVVVQPEALHRYNLTLNQIKQSIQQANNEVGGSVVEMGEAEYMVRGLGYLKSIEDI- 243

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                           + +      E       E   D    P        +     +  
Sbjct: 244 ----------------RKIPLPLTSEQQGTVLLEEVADIRIGPQVRRGITELNGDGEVVG 287

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            I   +   +   TI         L+ G       +           S            
Sbjct: 288 GIVVMRHGENALQTIAAVKDKLEELKQGLPEGVKVVPTYDRSNLIQASTDNLTTKLIEEM 347

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
             V +V  + + + +  +VA  S+ L+V+  + ++++LG +  + S+ GI + IG  VD+
Sbjct: 348 FFVAVVCILFLWHARSAVVAIVSLPLSVLFAVWIMNMLGISANIMSLGGIAIAIGALVDA 407

Query: 431 NILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            I++ E   +  +             +    ++        ++F S +   ++ V +F  
Sbjct: 408 AIVMIENTHKHLQNYQERHKIVAKGSARLKVVNEACREVGPSLFFSLLVITVSFVPVFVL 467

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G      A T  L++  +   A++++  ++  ++R K               +   
Sbjct: 468 QGQQGRLFEPLAYTKTLAMAAAAIIAVTLIPVLIALLVRGKIPAEEKNWLSRGLIALYRP 527

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           +    ++     + +++L +  +                 G  + +   
Sbjct: 528 LLAFTLKFPKTIIVLALLITASAWHPYKQLNYELMPPLHEGDLMYMPTT 576



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/192 (16%), Positives = 74/192 (38%), Gaps = 10/192 (5%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +   +       A    LE +K+ + E V +    +   +    +  L  K I  
Sbjct: 287 GGIVVMRHGENALQTIAAVKDKLEELKQGLPEGVKVVPTYDRSNLIQASTDNLTTKLIEE 346

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +   A+  ++++W       A+ AI +L L +   +    + GI  N+ ++  +   IG 
Sbjct: 347 MFFVAVVCILFLWHARS---AVVAIVSLPLSVLFAVWIMNMLGISANIMSLGGIAIAIGA 403

Query: 733 SVNDKVVVYD-------RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+  +V+ +         ++  K+     +   +++++  E      ++ +   +S +P
Sbjct: 404 LVDAAIVMIENTHKHLQNYQERHKIVAKGSARLKVVNEACREVGPSLFFSLLVITVSFVP 463

Query: 786 MAVWGGSVIGSF 797
           + V  G     F
Sbjct: 464 VFVLQGQQGRLF 475



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 86/245 (35%), Gaps = 7/245 (2%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            + + + LS V     +     +  ++        +            T+V  ++ K    
Sbjct: 792  SGQWLTLSDVADIRVTQGPAMLKSEDARLSSWVFIEPDKGVTVGDYITQVSGVMDKLEIP 851

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
            +    +         ++  +L     +   +  I +L+Y+  R     AL  I TL L +
Sbjct: 852  VGYNWSWTGQYKAMQQVESDLKEIIPL--TLLVILLLLYMTFR-SLPQALLVIGTLPLAL 908

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS-FRDLIDK 763
            T +L    L     +L  +  ++ L G +    VV+   +    K      +  +  +++
Sbjct: 909  TGSLWLIYLLDYNLSLAVIVGMIALAGVAAEFGVVMLLYLNNAWKAVAYDKNQLKAAVEE 968

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                 +     T +   + +LP+ + GG    V+   A PM  G+V+A   S+ +   + 
Sbjct: 969  GALLRVRPKAMTVLTIIVGLLPIMLGGGVGNEVMQRIAAPMVGGMVLAPLISMLVIPAVF 1028

Query: 821  LFIYD 825
                 
Sbjct: 1029 YLARK 1033


>gi|330466914|ref|YP_004404657.1| protein-export membrane protein SecD [Verrucosispora maris
           AB-18-032]
 gi|328809885|gb|AEB44057.1| protein-export membrane protein SecD [Verrucosispora maris
           AB-18-032]
          Length = 614

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 111/590 (18%), Positives = 210/590 (35%), Gaps = 80/590 (13%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV----DEDDFVNGF 69
           +  +G ++ +   L             +    LGLDL GG+ L LE     D        
Sbjct: 1   MAVLGGILVVLYLLVFFAGGASGGWKDRLEPRLGLDLVGGTRLTLEATNTLDGRAPTADN 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFADS-RFKENIADKVTLFLQGVN---- 123
           L+     + S +   G+    +    ++ I +S     R    I     L  + V     
Sbjct: 61  LEQARQIIESRVNAYGVAEAEVVTEGDRNIVVSLPGENRDLTEIGSAAELRFRKVLKIVD 120

Query: 124 --------SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------------------- 156
                   +             +     +   +                           
Sbjct: 121 GSGAIPSPAPSPSGTADPAATPSPTGSATPTPNAEATASPSGGQGGGAPSESPSATPSPS 180

Query: 157 --------SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                      + QS+E  R+ ++    +E+     G               +L+     
Sbjct: 181 ASASPSASEEPVPQSLEDQRKAVEAKVGAEAWAAASGLQAPADFSADPTLAEKLKPFAEL 240

Query: 209 TAKMSFHK---------------VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           T +                    +             + +    G    + D+ ++ G  
Sbjct: 241 TGREVAVLPTQMQFNVPTIGCLQLDDRPPASISAADQQVVACEGGYAKNLLDQAKVLGTD 300

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI---------------GKPLAVVL 298
           +  + A    +T + VV + F   G  ++  +TR+                 G+    V+
Sbjct: 301 V-DSAAAVRDQTSQWVVSLDFTRNGQEKWTALTREAFNNEGQACDASALGDEGRCRVAVV 359

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               + +    Q + +G +QI+GNF+   A  LA  L  G+LP+     E++NV A LG+
Sbjct: 360 LDNQIISSPQIQGVLTGNSQITGNFSNAEASELAGYLNYGALPVTFEAQEQQNVTATLGA 419

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL----GATLTL 414
             +  G  A   G++L++++    Y   G V   S+ L+ +L    L +L    G TLTL
Sbjct: 420 SYLRAGLLAAGIGMLLVIIYSFFYYRLLGTVIFASLVLSALLLFGALVVLGRQIGFTLTL 479

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
             I+GI++ +G+A DS ++  ER+++E R+ +S   ++   + RA  TI  +N   +++ 
Sbjct: 480 AGISGIIVSLGVAADSFVIYFERLKDEIREGRSPRSAVSRAWVRARRTIISANAITIMSA 539

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           VVL+    G V+GFA  +GL+ ++ +         MM  + R +   S  
Sbjct: 540 VVLYIVSVGTVKGFAFALGLATVLDLVVVFLFRHPMMTMLARSQAFLSPR 589



 Score = 92.4 bits (227), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 71/217 (32%), Gaps = 8/217 (3%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +  L       G+                 +      Q  + V   +    +R G++   
Sbjct: 371 QGVLTGNSQITGNFSNAEASELAGYLNYGALPVTFEAQEQQNVTATLGASYLRAGLLAAG 430

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNLTAVAAVLTLI 730
           I  + ++IY +  ++         +L+L      G   + G        L  ++ ++  +
Sbjct: 431 IGMLLVIIYSFFYYRLL-GTVIFASLVLSALLLFGALVVLGRQIGFTLTLAGISGIIVSL 489

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G + +  V+ ++R++  ++      S R  + ++        +  +    +S + + +  
Sbjct: 490 GVAADSFVIYFERLKDEIRE---GRSPRSAVSRAWVRARRTIISANAITIMSAVVLYIVS 546

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              +  FA  +    V+          P++  +   +
Sbjct: 547 VGTVKGFAFALGLATVLDLVVVFLFRHPMMTMLARSQ 583


>gi|91200521|emb|CAJ73570.1| similar to acriflavine resistance protein F [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1038

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 60/527 (11%), Positives = 142/527 (26%), Gaps = 37/527 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++    +   G++  L      S     P                          
Sbjct: 10  KPVTIIVGIIFVVLFGVISLLTMTYQLSPTITEPEIT--------------VTTTWVGAT 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +++   +                ITL F      ++   +V+  L  V
Sbjct: 56  PYNIEREIIEEQEKVLKGIPGLVEMESESFDGMGSITLKFTIETRIDDALLRVSNKLNEV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQN-NIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +   +  K ++  T      ++       +               +    +   +   
Sbjct: 116 -PEYPENVDKPIINPTGSAASPVIWIILHATEDNPRSIYSYRTYFEDEVRQYLDRVKGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    +P ++     T  ++       N +    + G+           
Sbjct: 175 DLAIHGGTDKEMHIIINPQKMAAYGVTITELVSLLKAENVNISSGIMGIERRDYRIRTIG 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 EI  I +          +    V   ++++                        
Sbjct: 235 EFNSAKEIENIIIKSDGQQRIVLSDLAKVSFGYEKLSNVMLHNGEEAIAIGVKPESGVNV 294

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     I + +                          +                 G+  +
Sbjct: 295 LELTNTIYEVV------------------DWLNKEKLAEEKVYLKWVYDQRPYINGAIRL 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K    I   L + VL + +      ++   SI +++  T   L   G  L + S+AGI 
Sbjct: 337 VKNNILIGGFLAIAVLLLFLRNVSSTVIIATSIPISIFGTFLFLKAFGRNLNVISLAGIS 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
             +G+ VD+ I+V E I    +  ++ F +   G    +  I  S +T +   + + F  
Sbjct: 397 FAVGMLVDNAIVVLENIDRHRKSGKTAFLAAYEGTKEVWGAILASTLTTIAVFLPIVFVQ 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
              G   R  AI +  ++ +S F ++ ++      + R  K+K+   
Sbjct: 457 EEAGQLFRDIAIAVTCAVGLSFFVSVFVIPMFSEQLFRRLKVKTKSF 503



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 61/163 (37%), Gaps = 6/163 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I   +A+ + +         +   T++ + I  T  F   FG   N+ ++A +   +G 
Sbjct: 342 LIGGFLAIAVLLLFLRNVSSTVIIATSIPISIFGTFLFLKAFGRNLNVISLAGISFAVGM 401

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            V++ +VV + +    +   +  +      +   E  G  + +++      LP+      
Sbjct: 402 LVDNAIVVLENI---DRHRKSGKTAFLAAYEGTKEVWGAILASTLTTIAVFLPIVFVQEE 458

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G +    AI +   + ++   S+F+       ++       +
Sbjct: 459 AGQLFRDIAIAVTCAVGLSFFVSVFVIPMFSEQLFRRLKVKTK 501



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 89/288 (30%), Gaps = 15/288 (5%)

Query: 546  RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
            R  G           + +  +    +  +      + +     V +  +     +  I  
Sbjct: 743  RKIGYYKQEGQKKIDLIVKASDETIHTPEILYNSLISLPNRSVVPVYSLSQLQRTTGITQ 802

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            I     D      V          A   +   V + + E   L  +              
Sbjct: 803  IRHLERDRTITLQVTPPETIPLQEAMEIIDGTVLQTLKEQDMLQGVTIRLSGAADKLTTT 862

Query: 666  IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFAL--FGI-----E 717
             +       ++ +   + +   F  + + L  I    + +    GF  L    I      
Sbjct: 863  RKALQWNFALAVVITYLLMSALFGNFIYPL--IIMFTIPLAAAGGFIGLRLVNICIALQP 920

Query: 718  FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            F++  +   + LIG  VN+ +++  +   N++     ++  D + +S    L     ++ 
Sbjct: 921  FDILTMLGFVILIGVVVNNAILIVYQALNNVRF--QGMNHHDAVIESTRTRLRPIFMSAF 978

Query: 778  AAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             +   +LP+ +    G  +       M  G+  +   +IFI   IL+F
Sbjct: 979  TSIFGMLPLVIAPGPGSELYRGLGSVMLGGLAFSTIFTIFIIPAILMF 1026


>gi|73667088|ref|YP_303104.1| acriflavin resistance protein [Ehrlichia canis str. Jake]
 gi|72394229|gb|AAZ68506.1| Acriflavin resistance protein [Ehrlichia canis str. Jake]
          Length = 1038

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/547 (11%), Positives = 150/547 (27%), Gaps = 42/547 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R N   + L  MI   G              ++ P                  +  L+ 
Sbjct: 9   LRRNRVSIFLLMMILVFGCYS-----YFNIPKEKNPEIKKPIL---------SIYTTLQG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   L    +     +K         +     + L F      +   + V   + 
Sbjct: 55  MSSEDVEKLLVYPIEREMKAIKGISRISSVAKTGYANVILEFNTGFDYKEALENVRSKID 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + +KL  +    ++         ++      D       + +    R    ++    S 
Sbjct: 115 IIRAKLPQEATFPMISEHNFSLFPVLSIALIGDLPDRTLFKIA----RNLQSKLESLPSI 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P  +         +    +  N             + +    
Sbjct: 171 ESVKIIGNSKDIVEVNISPDVINSYNLQMQDVVMAILNNNQFVNAGNLDSVIGKYTLHLP 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L+++  +I                    ++I     G          NI        + 
Sbjct: 231 GLLKNVQDI--------------------MNIPIKTDGYSVVTIGDVANIKLVYQDNKEF 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          S +A  +   TI     L + L          +  +      L   +
Sbjct: 271 VRVNHHPCLVLEISKQAGKNIVETIFQVKGLISNLSDVLPKNLSIVYLQDESEEILDILN 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    I    +++++ MI +  K  L+   SI  + +  + ++  LG TL +  +  +
Sbjct: 331 ELQNAILISVL-LVVIIMMIFMGTKTALLVAISIPGSFLFGMIIMYFLGYTLNIVILFSL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++ +G+ VD  I+V E    +     +   +        +  +  + +T L+  + L F+
Sbjct: 390 IMAVGMLVDDAIVVTEYADRKMIDGLNKTEAFKQAAYDMFWPVASATLTKLVVYIPLLFW 449

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G  ++   I +  ++  S   A+  +  +   I         +I  +         
Sbjct: 450 PGTTGEFMKYIPIALITTLSGSWIMALIFIPVLGSIIGTPSVTDKKNIAKIVAISTGDFI 509

Query: 538 IAIQFMR 544
               FMR
Sbjct: 510 KLGSFMR 516



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/190 (11%), Positives = 70/190 (36%), Gaps = 7/190 (3%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
            ++ +   +++++P +          +   +++ +    ++IS + ++I + I      A
Sbjct: 297 QVKGLISNLSDVLPKNLSIVYLQDESEEILDILNELQNAILISVLLVVIIMMIFMGTKTA 356

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    ++       +      G   N+  + +++  +G  V+D +VV +      +    
Sbjct: 357 LLVAISIPGSFLFGMIIMYFLGYTLNIVILFSLIMAVGMLVDDAIVVTE---YADRKMID 413

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
            ++  +   ++  +        ++   +  +P+  W    G  +    I +    +  + 
Sbjct: 414 GLNKTEAFKQAAYDMFWPVASATLTKLVVYIPLLFWPGTTGEFMKYIPIAL-ITTLSGSW 472

Query: 811 SSIFIAAPIL 820
               I  P+L
Sbjct: 473 IMALIFIPVL 482



 Score = 45.1 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 19/146 (13%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            AL  +T + L  T     F + G  F++      ++ L G  VN+ +++ D    NMK  
Sbjct: 882  ALIIMTAIFLSTTCVFFGFFITGHVFSVVMGGVGIIVLAGVIVNNNILLLDAFYINMKSI 941

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---------------WGGSVIGS 796
                  +D I  +    +   + T +   I ++PM +                   +   
Sbjct: 942  ---CDKKDAIIMAALSRVRPILLTVVTGIIGLVPMILRINFDFINRQIICNSPSSQLWFE 998

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLF 822
             +  +A G+ +A   ++F    +L+ 
Sbjct: 999  LSYTIAIGLFLATIITLFFTPALLMI 1024


>gi|95929329|ref|ZP_01312072.1| Heavy metal efflux pump CzcA [Desulfuromonas acetoxidans DSM 684]
 gi|95134445|gb|EAT16101.1| Heavy metal efflux pump CzcA [Desulfuromonas acetoxidans DSM 684]
          Length = 1072

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/653 (10%), Positives = 172/653 (26%), Gaps = 38/653 (5%)

Query: 22  ALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFL 81
           A    L  + +D  P       I          +          V   +          +
Sbjct: 26  AGVYVLRATPVDAIPDLSDVQVI---------VYSDYAGQAPQVVEDQVTYPLTTRLLSV 76

Query: 82  KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEK 141
            +            + + + F D         +V   L     +L      +L    +  
Sbjct: 77  PQAKTVRGYSFFGSSFVYVIFEDGTDLYWARARVLESLNTAAGQLPDGVVPSLGPDASGV 136

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
                     +        +           ++   E   +       + Q     DP+R
Sbjct: 137 GWVYQY---EVTSDQHDLQQLRSIQDWFLRYELTAVEGVSEVASIGGYVKQYQVRIDPNR 193

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           LR    T A++       N      +  +            +    ++  I L      +
Sbjct: 194 LRGYGLTLAEVRRAIAASNEDVGARLLEMGETEFMVRGLGYIRSVADLEAIPLREVGGRY 253

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                   + I  +            + +G                    I   ++  + 
Sbjct: 254 VLLGDVARIQIGPELRRGVAESNGDGETVGG-------------------IIVMRSGENA 294

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
             TIE        L+AG                   +             +V +V+ + +
Sbjct: 295 LATIERVKQRLTELQAGLPEGVTIHPVYDRSALIERAIDHLSTKLIEECVVVALVIVLFL 354

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            +     V   ++ + +++   +++  G    + S+ GI + IG  VD++I++ E   + 
Sbjct: 355 FHLPSAGVVVLTLPVAILMAFLIMNGQGINANIMSLGGIAIAIGAMVDASIIMIENAHKH 414

Query: 442 NRK---NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLS 495
                 ++     +         T+F S     ++ + +F      G   +  A T   +
Sbjct: 415 LEHPSGDEPHQQVILRAAQEVGPTLFFSLAVITLSFLPIFTLTDQAGRLFKPLAYTKTYA 474

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
           +  +   A+++V A+M++ +R +               +   +    +R R   + ++++
Sbjct: 475 MAAAAVLAVTLVPALMVWFVRGRIRPEQANPINRLLMRLYHPLVALVLRWRKTTLLVTLV 534

Query: 556 FSICSICLL-FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
             + S+  L            +G +         +  +  R  L+       SF      
Sbjct: 535 LVLSSLYPLSHLGSEFMPPLDEGDLLYMPTTLPGISTNKARELLQQTDKIIASFPEVANV 594

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                R +     +        +  K       ++  +        +   L  
Sbjct: 595 FGKAGRAETATDPAPLSMLETTIQLKDQRYWRRITVERFYSDWPQALQHPLRT 647



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 77/228 (33%), Gaps = 15/228 (6%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             E        Y   ++      ++   + +   VPL    +    G     +  R  ++ 
Sbjct: 830  SENARKTLWVYVDLNTDDVGGYVQRAHQAVAAQVPLPAGVSLVWSGQFEYMQQTRSRLL- 888

Query: 673  VIISAIAMLIYIWIRFKWYFALG-AITTLILDITKTLGFFALFGIEFNLTAVA--AVLTL 729
            +I+    ++I+I I       +  AI  L +  +    F+ L+ +++NL+      ++ L
Sbjct: 889  MIVPLTLVVIFILIYASTRCPMKTAIVFLAMPFSLVGAFWCLYALDYNLSVAVWVGLIAL 948

Query: 730  IGYSVNDKVVVY-------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
             G      V++        D+ R   +L       +  I     + +   V T     + 
Sbjct: 949  AGLDAETGVIMMLYLSMAEDQWRNEGRL-VNRHDLKLAIFDGAVKRIRPKVMTVGTVILG 1007

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            + P+      G  ++   A PM  G+  +A   + +   I        
Sbjct: 1008 LAPIMWSHGTGSEIMKRIAAPMVAGVTTSAIMELLVYPVIWYVWKSRN 1055



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 68/185 (36%), Gaps = 3/185 (1%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +   +          + L  ++  + E V +  + +   +  +    L  K I  
Sbjct: 283 GGIIVMRSGENALATIERVKQRLTELQAGLPEGVTIHPVYDRSALIERAIDHLSTKLIEE 342

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++ A+ +++++   F    A   + TL + I          GI  N+ ++  +   IG 
Sbjct: 343 CVVVALVIVLFL---FHLPSAGVVVLTLPVAILMAFLIMNGQGINANIMSLGGIAIAIGA 399

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+  +++ +   K+++  +     + +I ++  E      ++     +S LP+      
Sbjct: 400 MVDASIIMIENAHKHLEHPSGDEPHQQVILRAAQEVGPTLFFSLAVITLSFLPIFTLTDQ 459

Query: 793 VIGSF 797
               F
Sbjct: 460 AGRLF 464


>gi|187934206|ref|YP_001884570.1| cation/multidrug efflux pump [Clostridium botulinum B str. Eklund
           17B]
 gi|187722359|gb|ACD23580.1| cation/multidrug efflux pump [Clostridium botulinum B str. Eklund
           17B]
          Length = 1067

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/654 (10%), Positives = 182/654 (27%), Gaps = 46/654 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++++ ++   G +        +   +  P       +                 
Sbjct: 9   KRPLTIIMVFLVVIMFGYI-----GYLKMPANLMPDIEIPVVM---------VTTQWPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +E  S +      V   ++  + +   F        I + V   +  
Sbjct: 55  GPEDIDQQISGKIEEKLSAVSNVKKTVSMSQESVSMVVAQFEYGTDLNEILNDVRSKVDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  D  K+ ++       +I     +        ++           +I  +E   
Sbjct: 115 VQSTLPDDVTKSTVLKMDMNAEAISQLVISGGHSSEALMK---YAEDTIQPKIESAEGVT 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     Q+    DP+ L     +   +                             
Sbjct: 172 EAGINGGDKSQVNITVDPAILSNYGVSIQTIKNVLSA--------------------TNK 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G          +  + + V  +     G +        ++    A      
Sbjct: 212 TFPYGSITQGEDKIVLRGIDELNSLEDVKQVQIPVSGGKTVRLDKICDVEYGFAEKQAIY 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++        L + +   K+ I    +      S   
Sbjct: 272 RYNGQDSLVIDIQKQQDANTVQVMKDVNKTVEKLNSENPEYKIEI-VNDSSEYINDSIKS 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                AI A +  +V+F+ +   +  LV   +I  ++I  +ALL   G TL + ++  +V
Sbjct: 331 VMQNLAISAVISFLVIFLFLKSMRASLVVAIAIPTSIIGAIALLYFTGETLNMVTLGSLV 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + +G+ VD+  ++ E I +  ++    +      G     + I  S +T +   + + F 
Sbjct: 391 IAVGMVVDNATVIIENIFQYRKETVLDIDDCSIKGAQTVTNAIVASTLTTVAIFLPILFT 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI----DINPLSRFFL 533
            G         A T+  ++ +S+  A+++V ++   + +      +              
Sbjct: 451 EGFTKIMFGALAKTLIYALSLSLIVAVTLVPSIFAKLSKGSNATKLVEKPSPIFDKFNDK 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + + +     +   +   +LF                   +G + + +     ++L+ 
Sbjct: 511 YKNVLKVALNHKKIVVLISILLFVASIFGATLIGMDFMASADEGKLSVSISLPEGLELNA 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
               +   +               L       G++      L    ++      
Sbjct: 571 GDYYVSMAENNLSDIPEIKTTMTTLASSSRSGGNNANIAIELVPKNERKKSTND 624



 Score = 84.7 bits (207), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 89/252 (35%), Gaps = 6/252 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         V       + + D        + ++ + +     D    T   + +   
Sbjct: 760  QIKVASQSGQEVPIGAFADITMEDSLKSISKSDGDYTITISATVDDLDTSTASKQAI-NA 818

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
            I E+        +     ++  E +   I  ++++ I + + +  +F+ +      +  +
Sbjct: 819  INELDMPRDYSISFGGATEMMNESMSGLIFAMVVAIILVYMVMVAQFESFSKPFIIMFCI 878

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   +    +     N+  +   + L+G  VN+ +V+ D + + ++    + +  D+
Sbjct: 879  PFAFVGVVIALVITRANLNVVGMLGSILLVGIVVNNGIVLIDYI-EQLRKAKPNDNLIDI 937

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +       L   + T+M   + ++P A+    GG  +   A+ +  G+ V+   ++ +  
Sbjct: 938  VSIGSATRLRPVLMTTMTTVVGMIPTALSFGSGGETMQPLAVVIIGGLSVSTLVTLILIP 997

Query: 818  PILLFIYDWRAK 829
             I +       K
Sbjct: 998  AIYMIFDKVEKK 1009



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 90/255 (35%), Gaps = 9/255 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            +Q+ V   + V L  +             ++    +   +   + Q  ++V   + +  
Sbjct: 241 QVQIPVSGGKTVRLDKICDVEYGFAEKQAIYRYNGQDSLVIDIQKQQDANTVQVMKDVNK 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELI---RKGIVGVIISAIAMLIYIWIRFKWYFAL 694
             +K+    P   I+        I+  +    +   +  +IS + + +++        +L
Sbjct: 301 TVEKLNSENPEYKIEIVNDSSEYINDSIKSVMQNLAISAVISFLVIFLFL---KSMRASL 357

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
                +   I   +      G   N+  + +++  +G  V++  V+ + + +  K   T 
Sbjct: 358 VVAIAIPTSIIGAIALLYFTGETLNMVTLGSLVIAVGMVVDNATVIIENIFQYRKE--TV 415

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIF 814
           +   D   K         V +++      LP+    G     F   +A  ++ A S S+ 
Sbjct: 416 LDIDDCSIKGAQTVTNAIVASTLTTVAIFLPILFTEGFTKIMFG-ALAKTLIYALSLSLI 474

Query: 815 IAAPILLFIYDWRAK 829
           +A  ++  I+   +K
Sbjct: 475 VAVTLVPSIFAKLSK 489


>gi|91781484|ref|YP_556690.1| AcrB/AcrD/AcrF family cation efflux protein [Burkholderia
           xenovorans LB400]
 gi|91685438|gb|ABE28638.1| cation/multidrug efflux pump, AcrB/AcrD/AcrF family, RND
           superfamily [Burkholderia xenovorans LB400]
          Length = 1060

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 154/573 (26%), Gaps = 29/573 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           D+     +  Y   L + +        +       + + F      +    +VT   Q  
Sbjct: 57  DEMEKRIVLNYERGLSTAVNDIEHTESTSLNGIAVVKIFFQPHANIDEALAQVTALSQTQ 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L        ++      + I+    +   +     E           Q+        
Sbjct: 117 LRSLPPGITPPNILRYNASTVPILRLALSSASLTEQ--ELYDFGNNFLKTQLATVPGASA 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L       Q+  + D  +L++   +   +       N         +     S      
Sbjct: 175 PLPYGGKQRQIMVDIDSRKLQERNLSPMDVVNAVTAQNLILPSGTAKIGSTEYSVEMNGS 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +    +                     +I          +     ++        +   
Sbjct: 235 PDSLAGL--------------------NNIPIQSTANGTVYIRDVAHVRDGFQPQTNIVR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +          +     S    ++    +   LR                     S    
Sbjct: 275 VNGQRAALLTINKSGNTSTLEIVDRIKTMMPTLRNLVPASLNIDPVADQSLFVRASVQGV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A L  +++ + +   +  L+   SI L++I ++  LSLLG T+ + ++ G+ L
Sbjct: 335 LREALIAACLTGLMILLFLGNWRATLIIAVSIPLSMITSIIALSLLGETINIMTLGGLAL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E I  +  + +++  ++  G  +       S ++  I  V +F   G
Sbjct: 395 AVGILVDDATVAIENISHQLEQGKTLEQAILDGAHQIAIPTLVSTLSICIVFVPMFLLTG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM----KSIDINPLSRFFLIP 535
            A       A  +  ++L S F + ++V  +  +++RY               + F    
Sbjct: 455 VAHYLFIPLAEAVVFAMLASYFFSRTLVPTLAKYLLRYHHKAADLHHAPTQTRNPFMRAH 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 F R R                 +    +  G        LG      VD   + 
Sbjct: 515 YAFEGGFERLRERYRVFLEARVARPGLFVTLFLVCCGASMLLMPFLGRDFFPAVDAGTIA 574

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +L +     +       ++      Q  P   
Sbjct: 575 LHLRAKTGMRVEETAVVTDRVDTRIRQLIPAGE 607



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 62/155 (40%), Gaps = 4/155 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    ++ L +  ++   +L G   N+  +  +   +G
Sbjct: 338 ALIAACLTGLMILLFLGNWRATLIIAVSIPLSMITSIIALSLLGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +           +    I    ++    ++ ++++  I  +PM +  G
Sbjct: 398 ILVDDATVAIENI---SHQLEQGKTLEQAILDGAHQIAIPTLVSTLSICIVFVPMFLLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                F IP+A  +V A  +S F +  ++  +  +
Sbjct: 455 VAHYLF-IPLAEAVVFAMLASYFFSRTLVPTLAKY 488



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 63/169 (37%), Gaps = 7/169 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
            +   +       G++ + + + + I + F  W      +T L   +   +    L     
Sbjct: 877  QTMNDSFSGLFAGLVFAILLVYLLIVVNFQSWLDPFIIVTALPGALAGIVWMLFLTHTTL 936

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++ A+   +  IG +  + ++V    R+ +  +    + R  I+          + T++A
Sbjct: 937  SIPALTGAIMCIGIATANSILVISFAREQLLEH--GDAARAAIEAGFTR-FRPVLMTALA 993

Query: 779  AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
              I ++PMA+    GG         +  G+ +   +++     +   IY
Sbjct: 994  MVIGMVPMAIGLGEGGEQNAPLGRAVIGGLTIGTLATLIFVPVVFSMIY 1042


>gi|254452042|ref|ZP_05065479.1| cation/multidrug efflux pump [Octadecabacter antarcticus 238]
 gi|198266448|gb|EDY90718.1| cation/multidrug efflux pump [Octadecabacter antarcticus 238]
          Length = 1040

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/550 (12%), Positives = 151/550 (27%), Gaps = 40/550 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   V++ +++  +G+     + +P+      P  +P   +S GLD          +   
Sbjct: 10  SRSRVVVMALLMVLGVGAYAYSAIPKEANPEVP--LPFFYVSTGLD---------GISPT 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D     L+    E    +           +    I L F+     E   DKV        
Sbjct: 59  DAERLLLEPMETE-FGSITGLQRMNSDASEGFASIQLEFSPGGDNEEALDKVREAANRAQ 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L  D +   +         I+    +         + +     +  + I      ++ 
Sbjct: 118 GDLPDDARDITITEINTALFPIITVILSGPVPERTLNDLA----ERMQEGIEGLPGVLEV 173

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
               +    L    DP+  +    +  ++                          N  L+
Sbjct: 174 EIGGQRFEFLEVLIDPTVFQTYNLSFDELIGQV--------------------QRNNMLI 213

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                 +G            +    V+ +     G           I +          +
Sbjct: 214 AAGAIETGSGRIVLKVPGLIENLDDVMSMPVKVRGNAVVTFGDIATIRRTFDDPSSFARI 273

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                     + ++  +   T+     +   L+            +          S  +
Sbjct: 274 NGQPALALEITKRSGANIIETVVAVKAVVDELQVDWPESVEITYLQDQSKQVKDLLSDLE 333

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   LV+IV+ + +      ++   SI    +  +  L  +  ++ +  +  ++L 
Sbjct: 334 ANVMAAVILVMIVIVLSLGTR-SAILVGLSIPGAFLAGVIALWTMDFSMNIIVLFALILV 392

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +G+ VD  I+  E    + ++      +      R    I  S  T L     L F+ G 
Sbjct: 393 VGMLVDGAIVTTELADRKLQEGIEPKEAYSYAAKRMSWPIIASTATTLSVFFPLLFWSGM 452

Query: 484 ---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
               ++   IT+ L++  S+F A+  +  +   I +     +     L            
Sbjct: 453 VGEFMKFLPITVILTLSASLFMALIFIPVVGGLIGKRAPRTAKSKAALHAAEFGDPRDMT 512

Query: 541 QFMRARFWGV 550
            F  A    +
Sbjct: 513 GFTGAYVRLL 522



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 80/233 (34%), Gaps = 21/233 (9%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  +  ++      +     +  +   +        +  +     +   E +   +   
Sbjct: 802  DEKRVTAIEANVAPDILVNDQVIALTAALNAADLPDGVAFSFAGEAEDQAESMNFLVGAF 861

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIG 731
              +   M + + ++F  +Y A   ++ ++  I   L    + G  F +      V+ L G
Sbjct: 862  ATAIFLMFVILVLQFNSFYQAFVVMSAIVFSIAGVLLGLLITGRPFGIVMGGIGVIALAG 921

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VN+ +V+ D       L     S  +   ++  + L   + TS+   + ++PM +   
Sbjct: 922  IVVNNNIVLIDTYN---NLKKLGQSPLEAALRTGAQRLRPVILTSVTTALGLMPMVIGVN 978

Query: 789  ---------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                     +G          +  +A G+VVA   ++ +   +L    +   +
Sbjct: 979  LNFFTRDIVYGAPSTQWWTELSSAIAGGLVVATVLTLIVTPALL-MFGERNRR 1030



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 65/485 (13%), Positives = 153/485 (31%), Gaps = 30/485 (6%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT-------LPSIAGI 420
           +V  L++++      Y      A+  + L        L  +  T         + +  G 
Sbjct: 15  VVMALLMVLGVGAYAYSAIPKEANPEVPLPFFYVSTGLDGISPTDAERLLLEPMETEFGS 74

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS------NITALIAT 474
           + G+             I+ E         +LD     A     D            I T
Sbjct: 75  ITGLQRMNSDASEGFASIQLEFSPGGDNEEALDKVREAANRAQGDLPDDARDITITEINT 134

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            +                   +   M   I  +  ++   I  ++ + +++      F  
Sbjct: 135 ALFPIITVILSGPVPERTLNDLAERMQEGIEGLPGVLEVEIGGQRFEFLEVLIDPTVFQT 194

Query: 535 P---DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                   I  ++     +    + +     +L   GL   +D    + + V  N  V  
Sbjct: 195 YNLSFDELIGQVQRNNMLIAAGAIETGSGRIVLKVPGLIENLDDVMSMPVKVRGNAVVTF 254

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             + +   +        +        L   +    + +     ++ V  ++    P S  
Sbjct: 255 GDIATIRRTFDDPSSFARINGQPALALEITKRSGANIIETVVAVKAVVDELQVDWPESVE 314

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                   K  ++L+      V+ + I ++I I +      A+  +  L +      G  
Sbjct: 315 ITYLQDQSKQVKDLLSDLEANVMAAVILVMIVIVLSLGTRSAI--LVGLSIPGAFLAGVI 372

Query: 712 ALFGIEF--NLTAVAAVLTLIGYSVNDKVV---VYDRMRKNMKLYTTSISFRDLIDKSIN 766
           AL+ ++F  N+  + A++ ++G  V+  +V   + DR           I  ++    +  
Sbjct: 373 ALWTMDFSMNIIVLFALILVVGMLVDGAIVTTELADR------KLQEGIEPKEAYSYA-A 425

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           + +   +  S A  +SV    ++   ++G F   +   +++  S+S+F+A   +  +   
Sbjct: 426 KRMSWPIIASTATTLSVFFPLLFWSGMVGEFMKFLPITVILTLSASLFMALIFIPVVGGL 485

Query: 827 RAKNA 831
             K A
Sbjct: 486 IGKRA 490


>gi|303304909|dbj|BAJ14777.1| putative transporter [Staphylococcus lentus]
          Length = 796

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 85/614 (13%), Positives = 193/614 (31%), Gaps = 60/614 (9%)

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
           H +   A+     H    +   D+   +   +   D       ++       +  IN   
Sbjct: 64  HQDSEKASMRIVFHSQSENGINDKDTKKDIEKTLDDIKQDDDDILNVSNPYESKQINDDK 123

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV--EERNVGADLGSDSIYKGTCAIVA 370
            +  A I+   +  +    +       L    +    +            I   +  I  
Sbjct: 124 DTAIADINYVVSQTSLKDSSKNNIMHELNKLEDDHNLQIETTEGTSSDVDIGGMSEVIGV 183

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLA 427
            +  ++L +         +   S  + +  ++ L+ LL     +P++     +++G+ + 
Sbjct: 184 IVAFVILLITFGSLIAAGMPIISAVIGLGSSIGLIGLLTYVFDIPNVTLTLAVMIGLAVG 243

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           +D ++ +  R +E ++  +    ++ M    A S +  + IT +IA   L   G   +  
Sbjct: 244 IDYSLFILFRYKEVSKTEKDPIKAIGMAVGTAGSAVIFAGITVIIAVCGLSLVGIEFLAV 303

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
                 +S+L ++  A++++ A +    ++ K+K+        +        +       
Sbjct: 304 MGYASAISVLFAVLAALTLLPAFISIFHKHIKIKNKKNTDNKGYDTPWSNFVVGKPVIAV 363

Query: 548 WGVGISILFSICSICLLFTHGLNYGID--------------------FKGGIQLGVLANR 587
               + +  +I  +  +     + G+                     + G I + +    
Sbjct: 364 ILSLVVLGLAIIPVAQMRLGMPDDGMKPADSSAYKANELVSKEFGEGYNGQIVMLINTKD 423

Query: 588 PV-------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
                    +L  VR +LE L   D          N    L   P +        ++V  
Sbjct: 424 NGSENTIKRNLDNVRDDLEDLDSVDKVSSPQLTNNNNYALLAITPEEGPNAVSTNDLVYD 483

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG---------IVGVIISAIAMLIYIWIRFKWY 691
                       +        S   I              GVI++   +L+    R    
Sbjct: 484 LRDYDDQAQDKYDFNTEISGQSVINIDMSKKLNDAIPVFAGVIVALAFVLLLFVFR-SIL 542

Query: 692 FALGAITTLILDITKTLGF----------FALFGIEFNLTAVA-----AVLTLIGYSVND 736
             L A+   +L +  TLGF            LFGI+     +A      +  L G +++ 
Sbjct: 543 VPLKAVLGFVLSLMATLGFTTFVMQEGFLSGLFGIDATGPILAFLPVITIGLLFGLAIDY 602

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           ++ +  R+ +     + +      I   I ++    V  ++  F   +         I S
Sbjct: 603 ELFLMSRVHEEF---SKTGDNAHSIKVGIKQSGPVIVAAALIMFSVFIAFVFQDDVTIKS 659

Query: 797 FAIPMAFGIVVAAS 810
             I +AFG++  A 
Sbjct: 660 MGISLAFGVLFDAF 673


>gi|311743855|ref|ZP_07717661.1| membrane protein [Aeromicrobium marinum DSM 15272]
 gi|311312985|gb|EFQ82896.1| membrane protein [Aeromicrobium marinum DSM 15272]
          Length = 699

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/506 (11%), Positives = 157/506 (31%), Gaps = 54/506 (10%)

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGL 426
             + +IVL +         +        +++  + ++L+   + +P+ A     ++G+G+
Sbjct: 169 IVVAMIVLLVAFGSFVAMGLPIGMALFGLVVGFSSMALVTYLIDIPAWAPQLAAMVGLGV 228

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
            +D  + +  R RE   +  SV  +     + A   +  +  T ++A + L F G   V 
Sbjct: 229 GIDYALFLVTRHREHLAQGMSVPEAAGRALATAGQAVIFAGGTVVVAILGLLFAGIPFVS 288

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFII-----RYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G  I + + + + +  +++++ A++         R ++              +       
Sbjct: 289 GGGIAISVMVFVMVLASVTLLPALLGLTGERINGRRRRPHRPSAGWYRWGTHVTRHATAY 348

Query: 542 FMRARFWGVGISILFSICSICL---------------LFTHGLNYGIDFKGGIQLGVLAN 586
                   V ++      ++                        +G    G + + V  +
Sbjct: 349 LAGGVVLMVALAAPVLALNLGFPDDGTKPESRTERRAYDLIAEGFGPGANGPLVIAVDIS 408

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM--------- 637
               +    +   +   G  +  +   ++   V        +  Q    +          
Sbjct: 409 GGGSVVAALTAAVAADPGITAVGDPVVDRAAGVATLVAQPTTSPQDEATQETVARLRGEV 468

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
               +      + +         +   +  +    V+   +   + + + F+     L A
Sbjct: 469 FPAVLDGTGATAHVGGQTATFADLGDRVQERMPRFVVAVLVLSFLLLMVLFRSVLVPLKA 528

Query: 697 ITTLILDITKTLGFFA----------LFGIE-----FNLTAVAAVLTLIGYSVNDKVVVY 741
           +   +L +    G             L G+E      +   +     L G S++ +V + 
Sbjct: 529 VVLNLLSVGAAYGVLVMVFQWGWGAGLIGVEQAVPIVSFIPLFMFAILFGLSMDYEVFLL 588

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-IGSFAIP 800
            R+R+    Y         +   I  T GR++  +    ++V    + G    +    + 
Sbjct: 589 SRVREE---YRRCGDNTRAVVAGIAGT-GRTITAAALIMVAVFSGFILGSDPVVKMMGVG 644

Query: 801 MAFGIVVA-ASSSIFIAAPILLFIYD 825
           +A  I +      + +    +  + D
Sbjct: 645 LATAIFLDATVVRLVLVPATMKLLGD 670


>gi|92109533|ref|YP_571820.1| heavy metal efflux pump CzcA [Nitrobacter hamburgensis X14]
 gi|91802615|gb|ABE64988.1| Heavy metal efflux pump CzcA [Nitrobacter hamburgensis X14]
          Length = 1065

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/591 (12%), Positives = 165/591 (27%), Gaps = 42/591 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++I        G+       L    LD  P       I          +      
Sbjct: 11  RNLMLVLIGAVFAIAAGIYA-----LRTLPLDAIPDLSDVQVI---------VYTEYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLNT 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L       L    T        +    +  ++        IIR     I  +E   
Sbjct: 117 VARRLPTGVTPTLGPDATGVGWVYQYAVVAKNMTLAELRSVQDWIIRY---GISKAEGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP +LR    +  K+       N    G    +         + 
Sbjct: 174 EVASVGGFVKQYNIVVDPQKLRAQGISLDKLRSAVRASNMDVGGRTVELSEFEFVVRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                      +   + G              P        
Sbjct: 234 YLRGIEDIE-------------------NIVLKTDAGTPLRLRDVARVELGPDERRGITE 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    I+      + + +        +           +   
Sbjct: 275 LNGDGEVVSGIALQRFGANALTVIDNVKARLSEIASSLPKGVDIVTVYDRSELIKAAIET 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            KGT    + +V +V F+ +L+ +  LVA   + + +++  A +  +G    + S+ GI 
Sbjct: 335 LKGTLLEESIIVALVCFVFLLHLRSALVAILMLPVGILMAFAAMKFMGLGANIMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + +G  +D+ I++ E   +              L    S     +F S +   +A + +F
Sbjct: 395 IAVGAMIDAAIVMIENAHKHLERAEPGTPRTQILIDAASEVGPALFFSLLVITVAFLPIF 454

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   S+  +   +I++V A+M+  +R + +             + 
Sbjct: 455 TLEDQEGRMFGPLAYTKTFSMAAAALLSITLVPALMVVFVRGRIISEHKNPVNRFLIWVY 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    + A+   + ++++    ++      G  +      G  + +   
Sbjct: 515 RPVIRWVLNAKTLTIMLALVALAVTVWPARQLGSEFMPSLNEGTLMYMPTT 565



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 46/146 (31%), Gaps = 13/146 (8%)

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV-------YDRMRK 746
            L  + +L   +   +      G   ++      + L G +    VV+          ++ 
Sbjct: 888  LIVMLSLPFSLVGGIWLMWWLGFNMSVAVAVGFIALAGVAAETGVVMLIYLEQAMAELKA 947

Query: 747  NMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
                           D I     + +   + T +A    +LP+      G  V+   A+P
Sbjct: 948  ERAAAGRPFTRADLYDAIMLGAVDRVRPKMMTVVAIMAGLLPILWSTGTGSEVMQRIAVP 1007

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDW 826
            M  G+  +   ++ +   I   +  +
Sbjct: 1008 MIGGMASSTVLTLVVIPAIFAVVKGF 1033



 Score = 41.6 bits (95), Expect = 0.50,   Method: Composition-based stats.
 Identities = 21/165 (12%), Positives = 57/165 (34%), Gaps = 27/165 (16%)

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           +R  +V ++   + + I +      +  LGA                      N+ ++  
Sbjct: 357 LRSALVAIL--MLPVGILMAFAAMKFMGLGA----------------------NIMSLGG 392

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  ++  +V+ +   K+++          ++  + +E      ++ +   ++ LP
Sbjct: 393 IAIAVGAMIDAAIVMIENAHKHLERAEPGTPRTQILIDAASEVGPALFFSLLVITVAFLP 452

Query: 786 MAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +          F   A    F +  AA  SI +   +++     R
Sbjct: 453 IFTLEDQEGRMFGPLAYTKTFSMAAAALLSITLVPALMVVFVRGR 497


>gi|229193947|ref|ZP_04320856.1| hypothetical protein bcere0002_55660 [Bacillus cereus ATCC 10876]
 gi|228589522|gb|EEK47432.1| hypothetical protein bcere0002_55660 [Bacillus cereus ATCC 10876]
          Length = 773

 Score =  129 bits (324), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/558 (12%), Positives = 183/558 (32%), Gaps = 64/558 (11%)

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             +   +           +        + S+   +    ++A ++L + F   L     +
Sbjct: 151 KNVLNKIEQTREEGIQTELTGDVKFTVVESNGESEAIGIVIAFIILAITFTSFLAAGMPI 210

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +         +L + + S       L     I+LGI + +D  + +  R R++  +  SV
Sbjct: 211 ITAIIGLGTGMLVVMIGSNFIELQDLSLSVAIMLGIAVGIDYALFIMTRFRQQLGEGHSV 270

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             S+ +    A S +  + IT +I  + L       +    +   +SIL ++  +I ++ 
Sbjct: 271 KESIAIATGTAGSAVVFAGITVIIGLLGLSVMKIPFLTKMGVVSSISILCAVLVSIIVLP 330

Query: 509 AMMIFIIRYKKM---KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           A++  +                               +  +   V   +  ++ ++  + 
Sbjct: 331 ALLGIVGHRFHPSIGNKFFKKITGAKEGKVPSNKWGKLVTKHPLVMSFLAIALLAVISIP 390

Query: 566 THGLNYGIDFKGGIQ-------------------------------------LGVLANRP 588
              +N G+   G                                                
Sbjct: 391 FFHMNLGLPDDGDTMSKDTTERKAYDLMTEAYGEGVHSSLVMAAKIDSKKQDPQKTQKAM 450

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +++     L++++    +F N  G+   +        + +    +++ +++K       
Sbjct: 451 AEITEEIGELKNVKSVTPAFPNSSGDVFIITVTPKTGPNDIETKNLVKHIREKSNTTKKE 510

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAML-----IYIWIRFKWYFALGAITTLILD 703
           + I+        ++ ++  K    + I A+ ++     + + +       L A+   +L 
Sbjct: 511 NDIELLVTGTTAVNIDITEKLNTALPIFAVLVVGLAYVLLVLVFRSLLLPLKAVVGFLLS 570

Query: 704 ITKTLGF----------FALFGIEFNLTAVA--AVLTL---IGYSVNDKVVVYDRMRKNM 748
           +  TLGF            LFG   +   +A   +LT+    G +++ +V +  RMR+  
Sbjct: 571 LAATLGFAVFVIQDGNLLDLFGFPSSSAILAFLPILTIGILFGLAMDYEVFLASRMRE-- 628

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            +YT + + ++ I   + ++        +          +    ++ +  + +AFG++  
Sbjct: 629 -VYTHTGNPKEAILAGMRDSGKVVAAAGLIMIAVFFGFMLMPDPMVKAIGMSLAFGVLFD 687

Query: 809 AS-SSIFIAAPILLFIYD 825
           A    + I    +  +  
Sbjct: 688 AFVVRLTIVPAAMTLMGK 705


>gi|213416786|ref|ZP_03349930.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 302

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/327 (9%), Positives = 69/327 (21%), Gaps = 37/327 (11%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFT 324
                      +       +  +   T
Sbjct: 276 DYLSRFNGNPASGLGVKLASGANEMAT 302


>gi|167570464|ref|ZP_02363338.1| AcrB/AcrD/AcrF family protein [Burkholderia oklahomensis C6786]
          Length = 1048

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/590 (12%), Positives = 162/590 (27%), Gaps = 39/590 (6%)

Query: 1   MRNNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M  N + V +     + +   G+L A         +   P                    
Sbjct: 1   MSQNMFAVFIRYPVATCLMTAGILFAGVAAYFHLPVAPLPQVEFPTIQ---------VSA 51

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           VL   +   V   L    +   S +                I L F+  R  +  A+ V 
Sbjct: 52  VLPGADPVSVASTLAQPLETQFSKIPYVTQMTSQSTLSSTSIVLQFSLDRSIDAAANDVQ 111

Query: 117 LFLQGVNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +    ++L  D             +  I+L       +    I+    +  +    + 
Sbjct: 112 SAIDAAAAQLPADLPSPPTFQKVNPADSPIMLLSAISSTLPLTTID--DYVETRLTKSLS 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +         +    +  + DP +L     ++ ++                       
Sbjct: 170 QIDGVGSVSIGGQQKPSIRIQLDPVKLASRELSSEEVRRAL------------------- 210

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G   +    V            N          D                        
Sbjct: 211 -SGLSGVNPKGVFNGTTRSYTIYTNGQLTDPAQWNDAIVAYRAGTPVRIRDIGRAVLGPE 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                  +            K   +   T++        L A   P     V        
Sbjct: 270 DNTLAAWIDGKRSISVGIYKKPGANTVATVDKIRAKLPELEASLPPSLKIAVLADRTQTI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    + T  +   LV++V++  +   +  ++   ++ +++    AL+   G +L   
Sbjct: 330 RASLLDIELTLLLNVVLVVVVIYAFLGSVRTTIIPAITVPVSLFGACALMWACGYSLDNI 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+  + + +G  VD  I++ E I     + +    +   G S    TI   +I+ +   +
Sbjct: 390 SLMAMTIAVGFVVDDAIVMVENIARHVEEGERPLQAALKGLSETSFTIASISISLVAVLL 449

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L   G   G   R FA+T+ ++I++S F ++++   M  +++R ++           F 
Sbjct: 450 PLLLMGGIIGRMFREFAVTLSMTIIVSAFVSLTLTPMMASYLLRAQRHDGGRAPRPGLFE 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                ++  + RA    +    +        +      Y    KG     
Sbjct: 510 RAFARMSAGYERALDVALRHRFITLCAFFASVAASVFLYIGIPKGFFPQQ 559



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 82/244 (33%), Gaps = 8/244 (3%)

Query: 591  LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             SV R   +S+Q   ++ Q+          L        A T +             + +
Sbjct: 788  SSVARWTTDSVQPLSVNHQSHFPSVTISFNLAPGVSLGEATTAIEAAQAALRMPPAVVGS 847

Query: 651  IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
             Q T          +    +  +I++    L+   +   +      ++TL       +  
Sbjct: 848  FQGTAQAFQSTLATMPMLILSALIVAY---LVLGALYGSFIHPWTILSTLPSAGVGAIAT 904

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              LF  +FNL A+  V+ LIG    + +++ D           +++  D I  +      
Sbjct: 905  LWLFKYDFNLIALIGVILLIGIVKKNGIMMVD--FAIAATREQNMTSFDAIRNACLLRFR 962

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T+M A    +P+      G  +       M  G++V+   ++F    I L++    
Sbjct: 963  PIMMTTMTALFGAVPLMFTPGMGSELRQPLGYAMVGGLLVSQVLTLFTTPVIYLYLDTLS 1022

Query: 828  AKNA 831
             +  
Sbjct: 1023 NRLK 1026



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +    T+ + +          G   +  ++ A+   +G+ V+D +V+ + +
Sbjct: 353 AFLGSVRTTIIPAITVPVSLFGACALMWACGYSLDNISLMAMTIAVGFVVDDAIVMVENI 412

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
               +             K ++ET       S++    +LP+ + G   G +   FA+ +
Sbjct: 413 ---ARHVEEGERPLQAALKGLSETSFTIASISISLVAVLLPLLLMGGIIGRMFREFAVTL 469

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +  I+V+A  S+    P++        ++
Sbjct: 470 SMTIIVSAFVSL-TLTPMMASYLLRAQRH 497


>gi|269103113|ref|ZP_06155810.1| cobalt-zinc-cadmium resistance protein czcA [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163011|gb|EEZ41507.1| cobalt-zinc-cadmium resistance protein czcA [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 1041

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/591 (11%), Positives = 157/591 (26%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV++ ++      + ++     ++ +D  P       I                  
Sbjct: 11  KNRFLVLMATVFLVAAGIYSV----KRTPIDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL    K  L    T                     E           ++   +   +
Sbjct: 118 APKLPPSAKPVLGPDATGVGWIYSYV-LTDRSGKHDLSELRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 IATVGGMVKQYQIQIDPNKLRAYNLTLQQINKAIKAGNQEAGASVVEVAEAEHMVRATGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +++  ++                    + +     G         D    P         
Sbjct: 237 IKNIADLKN------------------IPLGVTSKGTPLLLGDVADINLGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   +    I       A L+         +           +    
Sbjct: 279 NGEGEAVGGVVVMRFGENAQQVIANVKEKLASLQRSLPEGVEIVPTYDRSTLIDNAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 YQKLLEEFIVVAIVCALFLFHLRSSLVVMISLPIGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   K    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIEKTPLTDENRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +               
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMASAAGLAITLVPVLMGYFIRGKVLPEHKNPINKAVVSAY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    +R     +  + +    +   +   G  +      G  + +   
Sbjct: 519 RPLLNISLRHPKSLLVAAGILMASAYYPIHNMGSEFIPPLDEGDLMYMPTT 569



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 82/266 (30%), Gaps = 18/266 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L   +   + L+ V +         I  +N        V +  +   S       ++ +
Sbjct: 780  PLVTPSGARIALADVATLRFEDGPPMIKTENARPNGWVFVDIDGRDLGSYVHEAQQKVAQ 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + +       +         +    L    +V   I+ I ML+Y+  R      L  + T
Sbjct: 840  ELVLPAGYSLSWSGQYEYMERAKARLTT--VVPATIAIIMMLLYMSFRRAGEV-LLIMGT 896

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-----------DRMRKNM 748
            L L +   L    +    F++      + L G +V   V++            ++ ++  
Sbjct: 897  LPLAMVGGLWLMEILDYNFSIAVGVGFIALAGVAVEIGVIMLVYLNQAWNGQIEQAKQEQ 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +   T       I +     +   + T     I ++P+      G  V+   A PM  G+
Sbjct: 957  RAL-TMADLTKAISEGAGLRVRPVMMTVATVIIGLIPIMFGHGTGSEVMQRIAAPMIGGM 1015

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNA 831
              A   ++ +   +         K  
Sbjct: 1016 SSALLLTLVVLPALFKLWKQTSYKLK 1041



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 85/237 (35%), Gaps = 3/237 (1%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++     +   +P         
Sbjct: 266 NLGPQMRRGISEFNGEGEAVGGVVVMRFGENAQQVIANVKEKLASLQRSLPEGVEIVPTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      ++   I + I      F    +L  + +L + I          G
Sbjct: 326 DRSTLIDNAVDNLYQKLLEEFIVVAIVCALFLFHLRSSLVVMISLPIGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVY 774
           I  N+ ++  +   IG  V+  +V+ + + K+++    +   R  +I K+  E      +
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMIENVHKHIEKTPLTDENRWQVIGKAAEEVGAPLFF 445

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           + +   +S +P+    G     F+ P+AF    A +S+  +A  ++  +  +  +  
Sbjct: 446 SLLIITLSFVPVFALEGQEGKMFS-PLAFTKTYAMASAAGLAITLVPVLMGYFIRGK 501


>gi|148360312|ref|YP_001251519.1| chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila str. Corby]
 gi|148282085|gb|ABQ56173.1| Chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila str. Corby]
          Length = 1070

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 79/535 (14%), Positives = 162/535 (30%), Gaps = 54/535 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N P ++ L  ++C +G        L +  +D FP   P               +V++ 
Sbjct: 10  LHNRPLILALTIILCLLGGYT-----LKRMPVDVFPEFAPP-------------QVVVQT 51

Query: 61  DEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    V   +    +   +                + IT+ F D          V 
Sbjct: 52  QAPGMATQDVETLVTYPLESAINGTPGVASVRSKTSVGLSTITVVFDDKTDIYRNRQLVN 111

Query: 117 LFLQGVNSKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +Q V ++L       + L  T+     +  +  +  +        S   IR R+  +G
Sbjct: 112 ERIQQVVNRLPPGVSSPVMLPVTSAVGWLLKYALVSRTESPETLRTISDWTIRPRLLALG 171

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                   +     + Q   +  PSR+     T  ++                       
Sbjct: 172 ---GVASVVSLGGEVKQYQVQLIPSRMLAYGITVEEVRQALTT----------------- 211

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             GNQ +    V  +G     +T             +     G     +           
Sbjct: 212 --GNQNVPGAFVHQAGTEFVVSTIGRIKTLKDIKKTLIVVRNGVPITIDNVAAVAFGGEI 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              D        +   +       +   T +    LA + ++    I+L     R     
Sbjct: 270 KRGDASYNAEHAVIGTVSKIYGADTLTTTHKVEQALADIKKSLPAGIELITEVFRQANFI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +           A +V+ VLF+ ++  +   +   S+ ++ I+ + +L   G  +   
Sbjct: 330 ESAIHNLTKALIEGAIIVIAVLFLFLMNWRASFITFLSMPVSFIVGILVLHYFGFGINSM 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNIT 469
           ++ G+ + IG  VD  I+  E +    R N+           +        S++  + I 
Sbjct: 390 TLGGMAIAIGEVVDDGIITVENVVHRLRLNRMSDKPLPTIEIVFDAVLEIRSSVVYATII 449

Query: 470 ALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             +  + +FF  G         AI    S+L S+  +I++V A+   ++  K  K
Sbjct: 450 ISLVFLPIFFLSGIPERIFSPLAIAYIASVLGSLVVSITMVPALCYLLLVRKSEK 504



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 80/261 (30%), Gaps = 10/261 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMV 638
            + V    P+ +  V +     +I                  +    D+     +V + +
Sbjct: 246 LIVVRNGVPITIDNVAAVAFGGEIKRGDASYNAEHAVIGTVSKIYGADTLTTTHKVEQAL 305

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAI 697
                 +     +              I      +I  + I + +       W  +    
Sbjct: 306 ADIKKSLPAGIELITEVFRQANFIESAIHNLTKALIEGAIIVIAVLFLFLMNWRASFITF 365

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTT 753
            ++ +     +     FG   N   +  +   IG  V+D ++    V  R+R N ++   
Sbjct: 366 LSMPVSFIVGILVLHYFGFGINSMTLGGMAIAIGEVVDDGIITVENVVHRLRLN-RMSDK 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAAS 810
            +   +++  ++ E     VY ++   +  LP+    G     F   AI     ++ +  
Sbjct: 425 PLPTIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGIPERIFSPLAIAYIASVLGSLV 484

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            SI +   +   +   +++  
Sbjct: 485 VSITMVPALCYLLLVRKSEKQ 505



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 89/258 (34%), Gaps = 9/258 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             + +           +    +  +++    F         ++ + +   +    + + E+
Sbjct: 805  NMLIDAHGAENQKTKIPLRAVADIRLEPQPFAINRENVQRVLVIAFNVQERDLGSVIQEV 864

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             ++   ++   S          +  ++  R  I+   ++   MLI +   F   F    +
Sbjct: 865  QQRVKEKVTLPSGYFIQYGGQFESQQQASRVIILFGALAVFIMLILLHKAFG-TFREALL 923

Query: 698  TTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
                L +    G  +LF  G   ++ A+   +TL G +  + +++        +L     
Sbjct: 924  VMFNLPLALIGGVISLFLAGANMSVAAMIGFITLFGIAARNGIILVSHYN---QLRVQGQ 980

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
                ++ +   + L   + T+  A + ++P+      G  +    A  +  G+  +   +
Sbjct: 981  PREQVVIQGTLDRLVPVLMTAATAALGLIPLLWGSPAGKELERPLAQVLLGGLFTSTVLN 1040

Query: 813  IFIAAPILLFIYDWRAKN 830
            +F+   +   I  WR + 
Sbjct: 1041 MFVVPTVYNAIEVWREQR 1058


>gi|325924063|ref|ZP_08185636.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
 gi|325545454|gb|EGD16735.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
          Length = 362

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 32/357 (8%), Positives = 78/357 (21%), Gaps = 35/357 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R+    V++  ++  +G++        +  L   P+  P               +    
Sbjct: 40  LRSPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTG 85

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    ++  + ++         R   + I++ F  SR  E  A+ V   + 
Sbjct: 86  ASAAVVESRITQVLEDALAGIEGIETIEARSRNGSSDISIEFVQSRDVEAAANDVRDAVS 145

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+ ++    +   +         I+    +        ++ S    R  +D+    +  
Sbjct: 146 RVSDRMPDQARPPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGV 203

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q     R    +    D  +L     T A +       N               +   +
Sbjct: 204 AQVRIGGRQRYAMRIWLDRDQLAARELTVADVEAALQNENVELPAGSIESAQRDFTLRVE 263

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  +                             G           +    A     
Sbjct: 264 RSYLKPED-------------------FAKLPLSKGEGGYVVRLGDVARVELTSAERRAY 304

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +       A   A  ++          V          
Sbjct: 305 FQSNGVPNVGLGIVRNSTANALDVAREARAQAEEVQKSLPQGTNIFVAFDTTTFIDA 361


>gi|158521228|ref|YP_001529098.1| acriflavin resistance protein [Desulfococcus oleovorans Hxd3]
 gi|158510054|gb|ABW67021.1| acriflavin resistance protein [Desulfococcus oleovorans Hxd3]
          Length = 1092

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/521 (12%), Positives = 150/521 (28%), Gaps = 43/521 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   +++L  +I   G              +  P     +                   
Sbjct: 9   KNRVSVMVLAIIIFVTGTW-----CYMALPRESAPDIEIPHVF---------VSTTYRGV 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   + +  +     L      +    +  + I + F      +++  KV   +  
Sbjct: 55  ASQDIETSITIPIENKLKNLDDVKQVMSVSSEGISYIDIEFIPGTDIDDVLQKVKNKVDE 114

Query: 122 VNSKLNVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               L  D +    +      ++ IV+   +    +    + + +      D+I      
Sbjct: 115 AMPDLPTDMENDPAVYEVNFSDMPIVIYSLSGPYGMRTLKKIADD----LEDEIEGITGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           ++   +     ++  E DP +L                 N +  G    +   R      
Sbjct: 171 LEADVTGTREREIRIEVDPDKLAYYHIPITAFQTVVPGENQNTTGGTVTLGDGRFQIRVP 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              E   E+ G+ +                         R  +      +          
Sbjct: 231 GEFETPEEVYGLVVASHQ--------------------GRPVYLKDVAVVVDDFKDETSR 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L            +A  +     E    + A  RA                       
Sbjct: 271 SRLDGHTAVNISVKKRAGENIIIIAEAVDAVIARHRAQWPSNITVTKLMDQAEEIHSMVK 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +        LV+ VL   +      L+   +I  +++L+  +L +LG TL +  +  +
Sbjct: 331 DLENNILSGLLLVVGVLLFSLGLRN-ALLVGLAIPFSMLLSFIVLYVLGVTLNMVVLFSL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD+ I++ E       +      +   G S     +  S +T + A   + F+
Sbjct: 390 TLALGMLVDNAIVIVENCYRYMEQGVPRLQAAIAGTSEVAYPVIGSTLTTVAAFFPMMFW 449

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
               G  ++   IT+ +++  S+F A+ I  A+  + ++ K
Sbjct: 450 PGIMGEFMKYLPITLVVTLSSSLFVALVINPALTTYFMKLK 490



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 21/216 (9%)

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
              E +  + T           E      +   + K    VI   +  LI + +       
Sbjct: 876  QAEKLLAEFTLPPGYQITFTGESEEQDEAGAFLSKAF--VIAVFLIFLILVTLFNSVMQP 933

Query: 694  LGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
               +T+++L +        L    F++      +++L G  VN+ +V+ D      KL  
Sbjct: 934  FIIMTSVLLSLGGAFLGLTLINAPFSIIMTGVGIISLAGVVVNNAIVLID---YTNKLRA 990

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-----WGGSVI----------GSF 797
              ++ RD +       L   + T++   + +LPM       +    I           S 
Sbjct: 991  GGMALRDAVIAGGATRLRPVILTAVTTILGLLPMVTGVSINFTDLSISLVSESSQYWRSM 1050

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            AI + FG+++A   ++ +   +         K  R+
Sbjct: 1051 AIVVIFGLMLATFLTLVVVPTLYTLADRLSRKMGRL 1086



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/138 (10%), Positives = 46/138 (33%), Gaps = 6/138 (4%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           AL     +   +  +     + G+  N+  + ++   +G  V++ +V+ +      +   
Sbjct: 356 ALLVGLAIPFSMLLSFIVLYVLGVTLNMVVLFSLTLALGMLVDNAIVIVENC---YRYME 412

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
             +          +E     + +++    +  PM  W    G  +    I +   +  + 
Sbjct: 413 QGVPRLQAAIAGTSEVAYPVIGSTLTTVAAFFPMMFWPGIMGEFMKYLPITLVVTLSSSL 472

Query: 810 SSSIFIAAPILLFIYDWR 827
             ++ I   +  +    +
Sbjct: 473 FVALVINPALTTYFMKLK 490


>gi|260777075|ref|ZP_05885969.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260606741|gb|EEX33015.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 1042

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/632 (11%), Positives = 166/632 (26%), Gaps = 40/632 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N  LV++ ++   +  L ++ N    + +D  P       I                  
Sbjct: 11  SNRLLVLIATLAIVLAGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  + K  L    T                     +           ++   +   +
Sbjct: 118 APNLPSNAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAQLRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNNAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   E G         D    P        +
Sbjct: 237 LTSIEDIR------------------SLPLKVTEKGTPLLLGDVADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I         L+         +           +    
Sbjct: 279 NGEGETVGGVIVMRFGENASEVIAKTKAKLTELQRSLPEGVEIVPTYDRSTLIDSAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFVIMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AI++V  +M + IR K +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAASAGLAITLVPVLMGYFIRGKVLPEHKNPVNKGLVSLY 518

Query: 536 DC-IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              + +     +   V    L +                  +G +         + +   
Sbjct: 519 KPLLNLSLNYPKTMIVIAMGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
           R  L+       S    +     + R +    
Sbjct: 579 RELLQQTNKLIKSVPEVETVWGKIGRAETATD 610



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 80/241 (33%), Gaps = 11/241 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++       +    ++   +P         
Sbjct: 266 NLGPQMRRGISELNGEGETVGGVIVMRFGENASEVIAKTKAKLTELQRSLPEGVEIVPTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDSAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILTAFVIMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              ++ +   +S +P+    G     F+ P+AF    A ++S  +A  ++  +  +  + 
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS-PLAFTKTYAMAASAGLAITLVPVLMGYFIRG 500

Query: 831 A 831
            
Sbjct: 501 K 501



 Score = 51.2 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 73/252 (28%), Gaps = 20/252 (7%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++  ++  D               +          + V E  +    ++   +      
Sbjct: 792  ADVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGSYVAEAQQVVADQLNLPAGYSLAW 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFAL 713
                +       +  V V I+   +++ ++  F+       +  + L +    G      
Sbjct: 852  SGQYEYMERAKERLSVVVPITLAIIMLLLYFSFR-RIGEVLVIMMTLPLAMVGGLWLMHY 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD------------LI 761
             G  F++      + L G +V   V++   +  N   +   +  ++             I
Sbjct: 911  LGYNFSIAVGVGFIALAGVAVEIGVIML--VYLNQAWHYKKLDAQEQNHAITSDDLSMAI 968

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   +   + T +   I ++P+      G  V+   A PM  G+  A   ++ +   
Sbjct: 969  RDGAGLRVRPVMMTVLTVIIGLVPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPA 1028

Query: 819  ILLFIYDWRAKN 830
            I           
Sbjct: 1029 IFKLWKQREISR 1040


>gi|306812993|ref|ZP_07447186.1| copper/silver efflux system, membrane component [Escherichia coli
           NC101]
 gi|305853756|gb|EFM54195.1| copper/silver efflux system, membrane component [Escherichia coli
           NC101]
          Length = 1047

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  VPQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|255021863|ref|ZP_05293873.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Acidithiobacillus caldus ATCC 51756]
 gi|254968687|gb|EET26239.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Acidithiobacillus caldus ATCC 51756]
          Length = 1036

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/595 (11%), Positives = 165/595 (27%), Gaps = 39/595 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   +V+   ++   G+L           L+  P   P   I                  
Sbjct: 12  NPLLVVLATLIVTVAGILAV-----RAIPLEAIPDISPTQVI---------VKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +     +              + + + F D        + V  +L+  
Sbjct: 58  PQVVQDQVTYPLETTLQEVPGAQAVRGYSMFGDSYVYVLFKDGTSIFQARNLVLQYLEQA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       L   ++  +           +   +  + +          +       Q
Sbjct: 118 QGELPSGVTPALGPNSSGVDWIYEY-ALTDPKGTLNLAQLTTLQNWFLKFALQGIPGVAQ 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  +      P R+     T  ++       N    G +  +   R        
Sbjct: 177 VATVGGMEQEYQVVVHPQRMIADKITLPQVEAAVRAANGETSGSVIDLGESRYIVRTSGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++                            G              P+       +
Sbjct: 237 IHSLQDL-------------------RQVPVAVRDGVPITLAQIARVQLGPVLPSGIAEL 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I       + N  I         L++        +           S +  
Sbjct: 278 NGQGQVVGGIVMMNQSGNANALIRKVAQKLHGLQSSFPAGVRIVTTYSQRPLIQRSIATL 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G        VL++ F+ +L  +  LV   ++ + ++   A++  LG +  + S+ GI +
Sbjct: 338 SGKLLEECVAVLLITFLFLLRARSALVVLITLPVGILAAFAIMYGLGISANIMSLGGIAI 397

Query: 423 GIGLAVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +G+ VD+ +++ E + +   +   Q+ + +           +F S +   ++ + +F  
Sbjct: 398 AVGVMVDAPVVMIENMHKRMEEGREQNPWIAAREAALEVGPALFFSLLIITVSFLPIFAL 457

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG   +     A T   +I  +   +I++V  +M + IR +               +   
Sbjct: 458 GGQEGKLFAPLAFTKTFAIGAAALLSITLVPLLMAWFIRGRIPAERKNPINRVLASLYRP 517

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           I    +RA +  + ++ L S+  I      G         G  L +   +   +S
Sbjct: 518 IIHAVLRAPWLILLLAGLLSLTMIYPWQRLGTQLMPPLDEGTLLYMPVAQNPAIS 572



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 95/285 (33%), Gaps = 6/285 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S++    S  ++ T G  + +     + + V    P+ L+ +        +     +   
Sbjct: 220 SVIDLGESRYIVRTSGYIHSLQDLRQVPVAVRDGVPITLAQIARVQLGPVLPSGIAELNG 279

Query: 613 GEKNF--LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
             +    +V +      +    +V + +    +       I  T    P I R +     
Sbjct: 280 QGQVVGGIVMMNQSGNANALIRKVAQKLHGLQSSFPAGVRIVTTYSQRPLIQRSIATLSG 339

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +      +LI      +   AL  + TL + I          GI  N+ ++  +   +
Sbjct: 340 KLLEECVAVLLITFLFLLRARSALVVLITLPVGILAAFAIMYGLGISANIMSLGGIAIAV 399

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+  VV+ + M K M+      +      ++  E      ++ +   +S LP+   G
Sbjct: 400 GVMVDAPVVMIENMHKRMEEG-REQNPWIAAREAALEVGPALFFSLLIITVSFLPIFALG 458

Query: 791 GSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           G     F   A    F I  AA  SI +   ++ +    R    R
Sbjct: 459 GQEGKLFAPLAFTKTFAIGAAALLSITLVPLLMAWFIRGRIPAER 503


>gi|171321629|ref|ZP_02910556.1| acriflavin resistance protein [Burkholderia ambifaria MEX-5]
 gi|171093097|gb|EDT38318.1| acriflavin resistance protein [Burkholderia ambifaria MEX-5]
          Length = 1076

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/634 (11%), Positives = 163/634 (25%), Gaps = 44/634 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G L  L     +   D FP+                  +V   
Sbjct: 8   LRRPYTFVVLALLIFIAGPLAIL-----RMPTDIFPNIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMAKRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + + +     +           Q+   
Sbjct: 112 NSASILRILPPGTLPPNIITYNASTVPILQLGLSSNTLAEQ--QLYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + D   L+        +       N    G    +     + 
Sbjct: 170 QGAAVPLPFGGKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGTAKIGTREYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     ++    +     +     ++    A  
Sbjct: 230 QMNGSTQTVAAL--------------------NNLPVKTIDGNVVYVHDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S    I+    +   + AG                   
Sbjct: 270 TNIVRVDGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGLPKALHISALGDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   SI L V+ +L  L  LG T+ + ++
Sbjct: 330 AVQGVVREALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSLLALGALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     +   +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLERGAPLEDAILTGAGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G         A  +  +++ S F + ++V  + + ++R K          +R    
Sbjct: 450 FMLTGVARYLFVPLAEAVIFAMVASYFFSRTLVPTLAMVLMRAKGQGRPPRGVFARIARF 509

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +F   R     +                L            G      VD   +
Sbjct: 510 QAAFERRFEAVRLRYRALLSAAISNRRRFAAAFLLACVASTGLFAFAGQDFFPSVDTGEI 569

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           R +L +     I       ++         P + 
Sbjct: 570 RLHLRAPTGTRIEETARLTDEVEARIRTVIPTNQ 603



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    ++ L +  +L      G   N+  +  +   +G
Sbjct: 338 ALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSLLALGALGQTINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +              D I     E    +  ++++  I  +PM +  G
Sbjct: 398 ILVDDATVAIENI---THHLERGAPLEDAILTGAGEIAVPTFVSTLSICIVFVPMFMLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  ++ A  +S F +  ++  +
Sbjct: 455 VARYLF-VPLAEAVIFAMVASYFFSRTLVPTL 485



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + I+   + + + + F  W   L  +  L   +        +     ++ A+   +  IG
Sbjct: 902  LAIAIALVYLLMVVNFQSWLDPLVIVGGLPASLAGIAWMLFVTRTTLSVPALTGTILCIG 961

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+   L  +  S      ++        V T++A  I +LPMA+   
Sbjct: 962  IATANSILVVNAARE---LIASGASPWQAALEAGFSRFRPVVMTALAMLIGMLPMALGLG 1018

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             GG         +  G+     S++     +  FI+ W
Sbjct: 1019 DGGEQNAPLGRAVIGGLAFGTLSTLLFVPVLFGFIHAW 1056


>gi|209523020|ref|ZP_03271577.1| heavy metal efflux pump, CzcA family [Arthrospira maxima CS-328]
 gi|209496607|gb|EDZ96905.1| heavy metal efflux pump, CzcA family [Arthrospira maxima CS-328]
          Length = 1033

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/553 (12%), Positives = 160/553 (28%), Gaps = 52/553 (9%)

Query: 1   MRNN---PWLVIL-YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           ++N+    WL+++   +I   G L        Q  LD FP   P               +
Sbjct: 10  LKNSIAQRWLIVIGAIVITIWGFLSI-----TQMPLDVFPPFAPPQ-----------VDI 53

Query: 57  VLEVDE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114
             E      + V   + +  +   + L    +   S +   + + + F            
Sbjct: 54  QTEAVGLAPEEVEAQITVPIESAVNGLPSVTLVRSSSKVGLSMVHVVFDQEADIYQARQA 113

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID-QVISHAIEQSMEIIRQRIDQ 173
           VT  LQ V S+L        +        +I+     ++ Q  +  ++    +     +Q
Sbjct: 114 VTERLQQVMSQLPQGIHPPEISPLVSPLGTILQYAFTVNGQGETSLMDLRRLVDVTLRNQ 173

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           I       Q         +     DP  LR    +  +++      N++  G        
Sbjct: 174 ILSVPGVSQVTIYGGDEREEQILVDPQLLRSRQVSLTEVTEAAREANSNAPGGFL----- 228

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                          + G             T + +                    +   
Sbjct: 229 ---------------VGGGQELLIRGIGQVNTLEDLQQSVVKVQYGEPILLQDVAEVKTG 273

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A+               + + +  I      +    +   L++   P        R   
Sbjct: 274 AALKRGDASFNGQAAVVLMINKQPDIDTPTVTQAVEAVMNSLQSTFPPDVEVQRTFRQSN 333

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +     G+      +V +++ + ++  +  ++   +I L++++ L L+  +G  + 
Sbjct: 334 FIDSAIGNVSGSLIQGIIIVSVIMLLFLMNLRTAIITLSAIPLSLLIGLMLMKAVGLGIN 393

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV------FCSLDMGFSRAYSTIFDSN 467
             ++ G+V+ IG  VD  I+  E      R+N +       F  +     +    +  S 
Sbjct: 394 TMTLGGLVVAIGSVVDDAIVDMENCYRGLRRNPTQETPKPPFQVVYDTSVQVRLAVIFST 453

Query: 468 ITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           +  ++    +F      G           LSI  S   A+++  A+   ++ + ++    
Sbjct: 454 VIIIVVFAPIFSLTGVEGRIFAPMGWAYLLSIAASTLVAMTLSPALCAILLAHHRLPQEG 513

Query: 525 INPLSRFFLIPDC 537
                        
Sbjct: 514 TFISRLAESWYRP 526



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 90/240 (37%), Gaps = 17/240 (7%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G I L     + + LS V      +    ++ +N          +  +   SV       
Sbjct: 780  GAIPLSTPTGQIIPLSAVARVEYGMGANVVNRENVSRLIVVSANVAERDLGSVVSDIQAA 839

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            + +                    K +  L+   ++       A++I I + F    +L A
Sbjct: 840  IRQNVQLPNGYFIQYGGQFEAEQKATNNLVWYSLLA------AIMIAILMFFSVK-SLPA 892

Query: 697  ITTLILDI--TKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
               ++L++      G  ++   G   ++ ++   +TL G +V + +++ D      + + 
Sbjct: 893  TVAIMLNLPLALVGGIVSILLTGGVISIASLIGFITLFGVAVRNGLLLVDNYN---QKFA 949

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              +  +++I +   E L   + T++ + + +LP+A+    G  V+   AI +  G+  + 
Sbjct: 950  QGMLLKEVITQGSLERLNPILMTALTSALGMLPLAIAQGAGNEVLQPLAIVVLGGLFTST 1009



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 78/253 (30%), Gaps = 7/253 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + V    P+ L  V        +              L+  +    D+   T+ +E 
Sbjct: 251 QSVVKVQYGEPILLQDVAEVKTGAALKRGDASFNGQAAVVLMINKQPDIDTPTVTQAVEA 310

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGA 696
           V   +    P                  I      +I   I + +I +        A+  
Sbjct: 311 VMNSLQSTFPPDVEVQRTFRQSNFIDSAIGNVSGSLIQGIIIVSVIMLLFLMNLRTAIIT 370

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           ++ + L +   L      G+  N   +  ++  IG  V+D +V  +   + ++   T  +
Sbjct: 371 LSAIPLSLLIGLMLMKAVGLGINTMTLGGLVVAIGSVVDDAIVDMENCYRGLRRNPTQET 430

Query: 757 FR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGIVVAAS 810
            +    ++  +  +     +++++   +   P+    G     FA         I  +  
Sbjct: 431 PKPPFQVVYDTSVQVRLAVIFSTVIIIVVFAPIFSLTGVEGRIFAPMGWAYLLSIAASTL 490

Query: 811 SSIFIAAPILLFI 823
            ++ ++  +   +
Sbjct: 491 VAMTLSPALCAIL 503


>gi|332186472|ref|ZP_08388216.1| acrB/AcrD/AcrF family protein [Sphingomonas sp. S17]
 gi|332013455|gb|EGI55516.1| acrB/AcrD/AcrF family protein [Sphingomonas sp. S17]
          Length = 1075

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/514 (13%), Positives = 154/514 (29%), Gaps = 36/514 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      V+L  +I   G + A+     ++  D FP       I+     RG       +
Sbjct: 9   LSKPYTFVVLAILIVLGGGIAAV-----ETPTDIFPDIRIP-VIAAVWTYRG-------L 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D     +  Y   L + +                + + F           +VT   Q
Sbjct: 56  PPRDMSGRVIYYYERSLSATVGDIDHIESQSLSGVGIVKIFFRPGVDIRTATAQVTAASQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  ++       L++      + I+    +   +     +            +   + +
Sbjct: 116 TVLKQMPPGITPPLILNYNASTVPILQLALSGKGLSEQ--KIYDLGQNMIRPALASVQGS 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+  + DP+ L+    +   ++      N         +          
Sbjct: 174 AIPSPYGGKERQVQIDLDPAALQAHRLSATDVANALAQQNQIIPSGTAKI---------- 223

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G +      N  P     + D+    +           ++        + 
Sbjct: 224 ----------GQYEYNLRLNNSPSVIDDLNDLPIKTVDGATVLMHDVAHVRDGSPPQRNE 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                S    +++   L   L A   P     +          + S
Sbjct: 274 VRVDGARSVLMTVLKSGSASTIAIVDSVKALMPKLEATLPPGLNVTLLSDQSVFVKAAVS 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I A L  +++ + +   +  ++   SI L ++  +A LS+ G TL + ++ G+
Sbjct: 334 GVMREGVIAAALTSLMILLFLGSWRSTVIIAASIPLAILAAIAGLSVAGQTLNIMTLGGL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   +  E I     + + V  ++  G  +     F S +   IA + +FF 
Sbjct: 394 ALAVGILVDDATVTIENINWHLEQGKPVREAILDGAKQIVGPAFVSLLCICIAFLPMFFL 453

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G A   FA    ++++ +M  +  + R ++  +
Sbjct: 454 PGVAGFLFAPM-AMAVVFAMIASFILSRTLVPTM 486



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 84/202 (41%), Gaps = 7/202 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            +   ++  ++  +   + ++ + +  +        ++R+G++   ++++ +L+++    
Sbjct: 299 DSVKALMPKLEATLPPGLNVTLLSDQSVFVKAAVSGVMREGVIAAALTSLMILLFLG--- 355

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +    ++ L I   +   ++ G   N+  +  +   +G  V+D  V  + +    
Sbjct: 356 SWRSTVIIAASIPLAILAAIAGLSVAGQTLNIMTLGGLALAVGILVDDATVTIENIN--- 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                    R+ I     + +G +  + +   I+ LPM    G     FA PMA  +V A
Sbjct: 413 WHLEQGKPVREAILDGAKQIVGPAFVSLLCICIAFLPMFFLPGVAGFLFA-PMAMAVVFA 471

Query: 809 ASSSIFIAAPILLFIYDWRAKN 830
             +S  ++  ++  + ++  ++
Sbjct: 472 MIASFILSRTLVPTMGNYLLRD 493



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/171 (13%), Positives = 60/171 (35%), Gaps = 7/171 (4%)

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL 720
                    I+G+  + I + + I + F  W   L  ++ L   +   +          ++
Sbjct: 890  MNTAFTGLILGLAGAIILIYLLIVVNFQSWIDPLVIVSALPAALAGIVWMLFATHTPLSV 949

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             A+   +  +G +  + V+V    R+ +     +I       ++        + T+++  
Sbjct: 950  PALTGAIMCMGVATANSVLVVSFARERLAACGNAI---QAAMEAGATRFRPVLMTALSMM 1006

Query: 781  ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            I + PMA+    GG         +  G++ A  +++     +    +    
Sbjct: 1007 IGMAPMALGLGEGGEQNAPLGRAVIGGLLCATLATLVFVPVVFAIAHRRDK 1057


>gi|223889448|ref|ZP_03624034.1| protein-export membrane protein SecD [Borrelia burgdorferi 64b]
 gi|223885134|gb|EEF56238.1| protein-export membrane protein SecD [Borrelia burgdorferi 64b]
          Length = 586

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 89/211 (42%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +      +  K         I +  I+GP +    I  GI    ++   
Sbjct: 365 NVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + ++I + +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFICVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRR---FENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 572



 Score =  115 bits (286), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 110/502 (21%), Positives = 197/502 (39%), Gaps = 71/502 (14%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGF------------LQMYSDELRSFLKKEGIGV 88
              I LGLDL GG  + + +D                    +      L+  + + G+  
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRSLTFAEREDAIYRIMQILKDRVDRFGLTE 192

Query: 89  FSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
             + +    NKI L     + +  ++  ++         ++ +    L     E      
Sbjct: 193 PKIVREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDESTSLLHRKILEAGSLFS 252

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           + +      +  +                       +      +    G  D S +R  +
Sbjct: 253 IPEIQASMNLPDS-----------------------KQIFPWYVKDSYGVDDESSVRYYV 289

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
              +         N+     +       D    +  V   +++ G          +    
Sbjct: 290 VDASP-------ENSFDGAHIKDAGVSNDPRTGRDTVAFSLDVDGSEKFFKFTQKNVGKS 342

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             VV     +  A   + +T  N+                          +    +F  +
Sbjct: 343 LAVVMEGKIKSVAGIGYAITGGNV--------------------------SIQGDSFDKK 376

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA + +  + P+ + I + R +G  LG+ +I  G  A    L L+ LF+ V YG  
Sbjct: 377 EAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCLVFLFICVYYGLS 436

Query: 387 GLVADFSIFL-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
           G+VA FS+ + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ 
Sbjct: 437 GVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREG 496

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +    + + GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++ 
Sbjct: 497 RRFENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLI 556

Query: 506 IVRAMMIFIIRYKKMKSIDINP 527
             R ++ FII  +K K I I+ 
Sbjct: 557 FSRFILEFIISVRKSKFISISW 578


>gi|325280628|ref|YP_004253170.1| acriflavin resistance protein [Odoribacter splanchnicus DSM 20712]
 gi|324312437|gb|ADY32990.1| acriflavin resistance protein [Odoribacter splanchnicus DSM 20712]
          Length = 1011

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 66/616 (10%), Positives = 189/616 (30%), Gaps = 55/616 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    +++       +G +        Q  +   P                   +    
Sbjct: 6   LKRPVAVIMSTIAFLVLGAVAMF-----QLPVSLMPDVDIPE-----------ISIHYTQ 49

Query: 61  DEDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           D      +   +          +          R+    IT+ F      +    +V   
Sbjct: 50  DNASVNEMENSITNLLRGQLQQIPSLSDITSESREGSGTITMKFEYGTSIDYAFIEVNQK 109

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQS--MEIIRQRIDQIGI 176
           +    +    + ++  ++  +  +I +   Q N+ ++ S                 ++  
Sbjct: 110 VDAAMNSFPKEMQRPTIIKASTSDIPVFYIQLNLKKLESDIKFLEFCEFADAVLKKRLEQ 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                    S     ++    D ++++ L  T  ++       N           + + +
Sbjct: 170 LPDVAMVDISGMYQPEMYILPDEAKMKSLNITQDQLKEAIDQNNRVSGSLSIRDGYYQYN 229

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +    ++  ++LN        K    V     D+ G                  
Sbjct: 230 IKFTSQLMSVEDVREVYLNIEGRLMQVKDIAEVGIRPRDKRG------------------ 271

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +     +  +   K   +    ++              P     V         
Sbjct: 272 ----MFVNGEKQSLCMAVIKQSSARMSEMKEKVSEMLENFETEYPDIEFSVSRDQAALLN 327

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S +  + +      L + ++   +   +  ++   SI ++V++++    L+G ++   S
Sbjct: 328 YSITNLQQSLVWGIILAVFIMLFFLRDARSPMIIGISIPVSVVISVLFFQLIGLSINTIS 387

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           ++G+++G+G+ +D++I+V + I +   +  S+F +   G +  +  +  S +T     V 
Sbjct: 388 LSGLIMGVGMMIDNSIIVIDNINQRRERGDSLFVACADGTAEIFRPLLSSVLTTCAVFVP 447

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--------KKMKSIDI 525
           L F G   G      A+ +G+ + +S+  +++IV  +   + +           +K I  
Sbjct: 448 LIFLGGVAGALFYDQAVAVGVGLFVSLIVSLTIVPVIFFLLFKRAHEDGKISNFVKRISF 507

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             L +++ I       F       + +++L  + +    FT            + +    
Sbjct: 508 KHLDKYYTIVYH--FVFYHRHKTMLIVAVLVLLGAATAFFTKVERMPPVEINEMLIRTDW 565

Query: 586 NRPVDLSVVRSNLESL 601
           N  + +    + ++ +
Sbjct: 566 NNSIHVDENYNRVQDI 581



 Score = 89.8 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 86/228 (37%), Gaps = 11/228 (4%)

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
             +  ++   G+K  +V          +   +++ V+ +  +             G     
Sbjct: 789  MEYDYKKIFGKKEGVVVPVQVYHTGDSIQEIIKTVRTEAVKANLDPHFGGAYFEG----N 844

Query: 664  ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            E   + ++ VI++ + +   +  +F+     L  +  + +D+  TL    + GI  NL +
Sbjct: 845  ETFWQMLMIVIVALLMLYFILASQFESLTLPLIVLIEIPIDVAMTLLALWICGISLNLMS 904

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
            +  ++ + G  +ND ++  D +   ++L        + I +     L   + TS+    +
Sbjct: 905  MIGIVVMSGIVINDSILKIDTI---IRLQQQGFPLLEAIHEGGVRRLKPILMTSLTTIFA 961

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            ++P       G  +    A+ M  G+ +    S++       ++   +
Sbjct: 962  LIPFLWGDDIGSQLQRPLAVAMISGMTIGTLVSLYWVPLCYYYLVRKK 1009



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 27/281 (9%), Positives = 89/281 (31%), Gaps = 7/281 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                        +  +  +   ++ +     +      + +               +++
Sbjct: 221 IRDGYYQYNIKFTSQLMSVEDVREVYLNIEGRLMQVKDIAEVGIRPRDKRGMFVNGEKQS 280

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             + +  Q    +++ +       +  E        +       +    I      ++  
Sbjct: 281 LCMAVIKQSSARMSEMKEKVSEMLENFETEYPDIEFSVSRDQAALLNYSITNLQQSLVWG 340

Query: 677 AI-AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I A+ I ++        +    ++ + +  ++ FF L G+  N  +++ ++  +G  ++
Sbjct: 341 IILAVFIMLFFLRDARSPMIIGISIPVSVVISVLFFQLIGLSINTISLSGLIMGVGMMID 400

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           + ++V D +    +      S          E     + + +      +P+   GG    
Sbjct: 401 NSIIVIDNIN---QRRERGDSLFVACADGTAEIFRPLLSSVLTTCAVFVPLIFLGGVAGA 457

Query: 796 SF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            F   A+ +  G+ V+   S+ I   I   ++    ++ +I
Sbjct: 458 LFYDQAVAVGVGLFVSLIVSLTIVPVIFFLLFKRAHEDGKI 498


>gi|302036098|ref|YP_003796420.1| acriflavin resistance protein acrB [Candidatus Nitrospira defluvii]
 gi|300604162|emb|CBK40494.1| Acriflavin resistance protein acrB [Candidatus Nitrospira defluvii]
          Length = 1058

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/539 (11%), Positives = 155/539 (28%), Gaps = 37/539 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN   +++L   +  +G        L +  +D FP+                  ++ + 
Sbjct: 8   LRNRIGILMLSLAMVILGATS-----LERLPVDLFPNIQVPVAF---------VGVIYKG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    ++  S            +Q    + + F           +V   + 
Sbjct: 54  APPLDIEQSVVYPIEKAVSSASNVEHVESFAKQGIGAVQVWFNWGADINVGQMEVMQRIT 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L     +  +V      I +     +   +   A             QI    + 
Sbjct: 114 QILNSLPPGILQPFIVKFDVSNIPVAFVTASGGDLDERA--LYDLAYNTIAPQIEQISNV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                    + Q+    DP+ L+    +   +                          N 
Sbjct: 172 AAATVEGGKIRQININLDPALLQARGLSILDVVKAVKAS-------------------NL 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L    ++   +  N  T             +   +             +     +  + 
Sbjct: 213 ILPSGDIKAGNLDYNVFTNTQFKTVEPINDVVVKIDQRGNPVRVRDVGVLSDSSDIQTNV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        + +   +    ++        +      ++L  +          S  
Sbjct: 273 VRTDGKRSVYLRVNKQPIANTVEVVDALRKAIPKMIGIPPGVQL-GISFDQSIYIRQSIK 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    + L   V+ + +      L+   +I L++++T  +L     TL + ++ G+
Sbjct: 332 NLIEQALHGSLLAAAVILLFLRNLTSTLIISVAIPLSILVTFIVLYFSNQTLNVFTMGGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            LGIG  VD +I+  E I+     +++ + ++          IF S +T ++  + +FF 
Sbjct: 392 ALGIGRLVDDSIVELENIQRHLNIDRNRWDAIVNAAREVAMPIFASTVTTVVVFLPMFFI 451

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G  R   I + L+I I++FT+  + R +   +         + +     + +     
Sbjct: 452 -VGIARLLLIPLTLTIAIALFTSFFVSRTVTPALCYRFLKPEEEAHRSLPSWFVNIMQW 509



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/284 (10%), Positives = 87/284 (30%), Gaps = 7/284 (2%)

Query: 552  ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
              I     +    +          K    +  +     +   V     +    +      
Sbjct: 762  PIIFTDPQNGNEYYISAWLADEHRKDLSAIENVLLTTKNGEPVLLKNLATLKLNAGPVKI 821

Query: 612  DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            + +    V              + + ++    ++              +  RE       
Sbjct: 822  ERKYFQRVVHITANPVGRDLGSIAQDLESAFAQMQLPPGFSIRLAGQIQQQRETFEGLTY 881

Query: 672  GVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
               ++ I + + +  +FK        + ++ + I   +    L     + +++  ++ ++
Sbjct: 882  ASALALILVYMVMAAQFKSLIDPFIIMFSVPMGIPGVIVILYLTNTTISTSSLMGLIMML 941

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G  V++ V++ D       L    +     +  +    L   + TS+A  + ++PMA+  
Sbjct: 942  GIVVSNGVLLVD---YTNVLRRRGLDLAAAVVTASRTRLRPILMTSLATVVGLMPMALGL 998

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              G       A  +  G+ V+   ++F+   +   + +   + A
Sbjct: 999  GTGSETNAPLARAVVGGLTVSTILTLFLVPTVYTMLEERFPRRA 1042



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 85/277 (30%), Gaps = 7/277 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                              +    + V  ++  +   VR         DI       +  
Sbjct: 219 IKAGNLDYNVFTNTQFKTVEPINDVVVKIDQRGNPVRVRDVGVLSDSSDIQTNVVRTDGK 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIV---PLSTIQNTEIVGPKISRELIRKGIVGV 673
             V L+           V++ ++K I +++   P   +  +      I + +       +
Sbjct: 279 RSVYLRVNKQPIANTVEVVDALRKAIPKMIGIPPGVQLGISFDQSIYIRQSIKNLIEQAL 338

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             S +A  + +         L     + L I  T           N+  +  +   IG  
Sbjct: 339 HGSLLAAAVILLFLRNLTSTLIISVAIPLSILVTFIVLYFSNQTLNVFTMGGLALGIGRL 398

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+D +V  + +++++ +        D I  +  E       +++   +  LPM      +
Sbjct: 399 VDDSIVELENIQRHLNIDRNRW---DAIVNAAREVAMPIFASTVTTVVVFLPMFFI-VGI 454

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                IP+   I +A  +S F++  +   +     K 
Sbjct: 455 ARLLLIPLTLTIAIALFTSFFVSRTVTPALCYRFLKP 491



 Score = 42.0 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 52/483 (10%), Positives = 136/483 (28%), Gaps = 50/483 (10%)

Query: 89   FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL------------- 135
                + Q +I L     +  E   D+V    + +  K+  D  + +              
Sbjct: 559  PVSDESQFRIVLRGPVGQRVEKTVDQVAEVERVLREKIPPDELEAIASSTGVLAQGRSSL 618

Query: 136  --VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
                T      I +   + D+   + +E    +    I             G  + +   
Sbjct: 619  FNPNTGPHTSVISVYLVSPDKRRRNQVEIMNAVRPAIIKLFPGVAMFFDPGGLVKRVTSF 678

Query: 194  PGEQ--DPSRLRQLLGTTAKMSFHKVLPNNSKKG------------------------FM 227
              ++  D             +        +   G                         +
Sbjct: 679  GSQKSIDVEIYGYDFEKARTVIHQVQDTMHKIPGMADIEVSREENYPEVNVVVDREKAAL 738

Query: 228  FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
             G+     ++   + +    +   I         +      + D    ++ A     +T 
Sbjct: 739  LGISETDVANAVLFSLNGNGQTDPIIFTDPQNGNEYYISAWLADEHRKDLSAIENVLLTT 798

Query: 288  DNIGKPLAVVLDGRVLTAPVINQAIPSGKA--QISGNFTIETAGILAAMLRAGSLPIKLN 345
             N    L   L    L A  +       +    I+ N      G +A  L +    ++L 
Sbjct: 799  KNGEPVLLKNLATLKLNAGPVKIERKYFQRVVHITANPVGRDLGSIAQDLESAFAQMQLP 858

Query: 346  IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI----VLYGKWGLVADFSIFLNVILT 401
                  +   +             + L LI+++M+            +  FS+ + +   
Sbjct: 859  PGFSIRLAGQIQQQRETFEGLTYASALALILVYMVMAAQFKSLIDPFIIMFSVPMGIPGV 918

Query: 402  LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
            + +L L   T++  S+ G+++ +G+ V + +L+ +      R+   +  ++         
Sbjct: 919  IVILYLTNTTISTSSLMGLIMMLGIVVSNGVLLVDYTNVLRRRGLDLAAAVVTASRTRLR 978

Query: 462  TIFDSNITALIATVVL---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
             I  +++  ++  + +      G       A  +   + +S    + +V  +   +    
Sbjct: 979  PILMTSLATVVGLMPMALGLGTGSETNAPLARAVVGGLTVSTILTLFLVPTVYTMLEERF 1038

Query: 519  KMK 521
              +
Sbjct: 1039 PRR 1041


>gi|90407464|ref|ZP_01215647.1| putative cation efflux system transmembrane protein [Psychromonas
           sp. CNPT3]
 gi|90311385|gb|EAS39487.1| putative cation efflux system transmembrane protein [Psychromonas
           sp. CNPT3]
          Length = 1045

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/592 (11%), Positives = 160/592 (27%), Gaps = 40/592 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   +++   +I   GL       L ++ +D  P       I                 
Sbjct: 11  KNRILVLLCAVVIVAYGLFS-----LQKTAIDAIPDLSDVQVI---------IKTTYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +    +         + + + F D         +V  +L  
Sbjct: 57  SPQVVEDQVTYPLTTAMLSVPGAKVVRGYSFLGDSYVYIIFEDGTDMYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L    K  L    T                     E           ++       
Sbjct: 117 VTTSLPAQAKSALGPDATGVGWIFSY-ALVDKTGKHDLSELRSLQDWYLKYELQTVPGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     DP++LR    +  ++       N      +  +           
Sbjct: 176 EVASVGGMVKQYQVRVDPNKLRAYNLSLIQVKQAIKNGNQESGASVLELGEGEYMLRISG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++                   ++ +  +  G         D    P        
Sbjct: 236 YVSSLDDLK------------------LIPLKMNVKGTPLLLRDVADIRLGPQMRRGITE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    I+        L+ G       +           +   
Sbjct: 278 LNGEGEVVSGIIVMRFGENAQGVIQALKAKLKELQKGLPKGVEIVPTYDRSELINAAVDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V++V    + + +  LV   S+ + +     ++S  G +  + S+ GI 
Sbjct: 338 LYYKLLEEFIVVILVCAAFLFHFRSALVVLVSLPIGIFCAFIIMSWQGISANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           + IG  VD  I++ E + +   K    +++ +  +          +F S +    + + +
Sbjct: 398 IAIGAMVDGAIVMIENVHKHIEKTPLTDENRWQVISKAAIEVGPALFFSLLIITFSFLPV 457

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G + +     A T   ++  S   AI+++  +M + IR K +             +
Sbjct: 458 FALEGQSGKMFSPLAFTKTYAMAASAGLAITLIPVLMGYFIRGKVLPEHKNPLNRGVVAL 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              +    ++     +  + L  +     L   G  +      G  + + + 
Sbjct: 518 YKPVLTFSLKYPKSIIIFAFLLLMVGFYPLNKIGSEFIPPLDEGDLMYMPST 569



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 66/157 (42%), Gaps = 2/157 (1%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + +L+     F +  AL  + +L + I       +  GI  N+ ++  +   IG  V+
Sbjct: 346 FIVVILVCAAFLFHFRSALVVLVSLPIGIFCAFIIMSWQGISANIMSLGGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
             +V+ + + K+++    +   R  +I K+  E      ++ +    S LP+    G   
Sbjct: 406 GAIVMIENVHKHIEKTPLTDENRWQVISKAAIEVGPALFFSLLIITFSFLPVFALEGQSG 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ P+AF    A ++S  +A  ++  +  +  +  
Sbjct: 466 KMFS-PLAFTKTYAMAASAGLAITLIPVLMGYFIRGK 501



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 88/281 (31%), Gaps = 13/281 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I L + +     +     + +    N  V L  +           I  +N     
Sbjct: 756  LERYPINLRYINAYRDSLSALRNLPIVTQKNITVSLQDIAKVYVQSGPAMIKTENARLNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V ++ +   S  Q     + K+                   K +  L +   V VII
Sbjct: 816  WVFVDIENRDLGSYVQDAKARVDKELSLPAGYTLIWSGQYEYMQKANARLAKVIPVTVII 875

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              +  L+Y+  R +    L  + TL   +   +    L    F++      + L G S+ 
Sbjct: 876  IIL--LLYMAFR-RVGEVLLILATLPFALMGGIWLMFLLNFNFSIAVGVGFIALAGVSIE 932

Query: 736  DKVVVYDRMRKNMKLYT-------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
              V++   + ++++               RD + +     +   + T     + ++P+  
Sbjct: 933  IGVIMLLYLNQSLEAKKLQRMDKFNVQDLRDAVMQGAGLRVRPVMMTVATVVMGLVPIMF 992

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                G  V+   A PM  G++ A + ++ I   +       
Sbjct: 993  AQGAGSEVMQRIAAPMIGGMLSAITLTLLILPSVYFQWKKR 1033


>gi|254514915|ref|ZP_05126976.1| acriflavin resistance protein [gamma proteobacterium NOR5-3]
 gi|219677158|gb|EED33523.1| acriflavin resistance protein [gamma proteobacterium NOR5-3]
          Length = 791

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/515 (12%), Positives = 146/515 (28%), Gaps = 41/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            +   +++  ++   GL+           +   P  +      +G+   G S        
Sbjct: 10  RSRSTLMIMGVLVLAGLIS-----RSLLPIANDPHIVLP-YFYIGIPHEGIS-------- 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            +     L    +     ++       +  +    I + F  S         V   +   
Sbjct: 56  PEDSERLLIQPMEIELRKIEGLKEINATASEGYATIFVEFEPSVDLNAALMDVREAVDRG 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S++    ++ ++      +  ++             I ++   +R   D I    S + 
Sbjct: 116 KSEIPTTAEEPVVRELDVDDFPLIQINLLSAGASERQIYETALSLR---DDIESIPSVLS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L    DP  L     ++  +       N             R S     +
Sbjct: 173 ADIRGDREEVLEVIIDPQALEAYQISSESLVSILQRNNRLIPAGSVDTGQGRFSVKVPSV 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           VE   +I                    +D+     G           I +          
Sbjct: 233 VESASDI--------------------MDLPVQVSGDSVVTLSDVATIRRTFKDRTSHAR 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T E    +     AG       +  +          +  
Sbjct: 273 FNGVETMTIEVKKRVDANVIDTSEAVLKVVDEATAGLPSTIRVVPSQNTAEFAQVQVTEL 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G       LV++++   + +   G++    I ++++ ++ ++  LG T     + G++L
Sbjct: 333 QGNIMTALALVMVIVVAAMGFR-SGVIVGLGIPVSLLFSIIIIYQLGYTFNFMVMFGMLL 391

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           G+G+ +D  I+V E    +  +      +      R +  +  S  T L A + L F+  
Sbjct: 392 GLGMLIDGAIVVTEYADRKMSEGMDHREAYAEAVKRMFWPVTASTATTLAAFLPLIFWPG 451

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G  +R   +T+   +  S+  A+     +    
Sbjct: 452 ISGQFMRYLPVTVFTVLTGSLIYALLFGPVLGSIF 486



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 72/216 (33%), Gaps = 11/216 (5%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP----GDSVAQTRVL 635
            + V  +  V LS V +   + +      +    E   +   +         S A  +V+
Sbjct: 243 PVQVSGDSVVTLSDVATIRRTFKDRTSHARFNGVETMTIEVKKRVDANVIDTSEAVLKVV 302

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           +     +   + +   QNT         EL    +  + +  + ++  +  R      LG
Sbjct: 303 DEATAGLPSTIRVVPSQNTAEFAQVQVTELQGNIMTALALVMVIVVAAMGFRSGVIVGLG 362

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              +L+  I          G  FN   +  +L  +G  ++  +VV +      +  +  +
Sbjct: 363 IPVSLLFSIIII----YQLGYTFNFMVMFGMLLGLGMLIDGAIVVTE---YADRKMSEGM 415

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             R+   +++         ++     + LP+  W G
Sbjct: 416 DHREAYAEAVKRMFWPVTASTATTLAAFLPLIFWPG 451


>gi|313497275|gb|ADR58641.1| Uncharacterized transporter HI0895 [Pseudomonas putida BIRD-1]
          Length = 1014

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/474 (12%), Positives = 141/474 (29%), Gaps = 29/474 (6%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           +         +  +  +         RQ  + I++        + +
Sbjct: 45  ITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRL 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++      V +KL  D +  +L        +++       ++ +   + +  + R   
Sbjct: 105 FTELLAKANEVRNKLPQDSEDPVLSKEAADASALMYVSFYSKEMSN--PQITDYLSRVIQ 162

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++       +       +  +    DP +L     +   ++      N           
Sbjct: 163 PKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGE 222

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           ++  S      ++                      +    +     G  R        + 
Sbjct: 223 YVVTSVNASTELKSA--------------------EAFAALPLKTSGDSRVLLGDVARVE 262

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                                       +    I+    +   L +         +    
Sbjct: 263 MGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVRRIMPELESQLPSALKVSIAYDA 322

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      +V++V+F+ +   +  L+   +I L++I  L  + ++G +
Sbjct: 323 TRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYS 382

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L L ++  +VL IGL VD  I+V E I     + +S F +   G       +    IT  
Sbjct: 383 LNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSPFDAALEGAREIAMPVVSMTITLA 442

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
                + F     G   + FA+T+  +++IS   A+++   M   ++R ++  S
Sbjct: 443 AVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTLSPMMCALLLRREQNPS 496



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  + T+ L +   L F  + G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 LRSVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 S  D   +   E     V  ++       P+       G++   FA+ +A  ++
Sbjct: 412 HMEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVI 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++   ++   +P++  +   R +N
Sbjct: 472 ISGIVAL-TLSPMMCALLLRREQN 494



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 6/162 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALLPLFLGVSSMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++ +    N       +S R+ I+++    L   + T+ A    ++P+    G 
Sbjct: 911  ISKHGILIVE--FANQLRDERGLSVREAIEEAAAIRLRPVLMTTAAMVFGMVPLILASGA 968

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +  F I M    G+ +    ++F+   I   +    +  A
Sbjct: 969  GAVSRFDIGMVIATGMSIGTLFTLFVLPCIYTLLAHKASAKA 1010


>gi|114571169|ref|YP_757849.1| acriflavin resistance protein [Maricaulis maris MCS10]
 gi|114341631|gb|ABI66911.1| acriflavin resistance protein [Maricaulis maris MCS10]
          Length = 1067

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/517 (11%), Positives = 131/517 (25%), Gaps = 40/517 (7%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
              +IL   +C +   IA          +  P       I           + L+    +
Sbjct: 11  RARMILAIFVCAL---IAGLIAFATLPREADPDIPFPFVI---------VVVPLDGISPE 58

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                +   ++     ++       +       +   F      +     V   +     
Sbjct: 59  DAERLIVRPTETEMRAIEGLEELNGTASLGAGTLVAEFDVPFDADQSVLDVREAVDMARR 118

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +   D ++ ++          +  Q   +              R   D++      +Q  
Sbjct: 119 EYPEDVREPVIQEFNSALAPTIAVQIYGEAPERALFR----TARALEDELEALPQILQVD 174

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                   L    DP+RL     T A++       N             R       L E
Sbjct: 175 IQGLREEVLEIVIDPARLETYGVTYAQLFNTVQSNNRLIAAGSLDSGEARFQVKVPGLFE 234

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
                                    +++     G          ++ +            
Sbjct: 235 --------------------EADDALNLPLTRSGDTVVTLQDVASVRRTFKDADSFARYN 274

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                      ++  +   T      L             +            S      
Sbjct: 275 GAPAYTLQVVRRSGENIMETAAAVRALTNEAATNWPETIRHDFSLDLSTYVRDSLQSLTS 334

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           +  +   LVLI++   +      L+   +I  + + +  LL L G T+    +  +VL +
Sbjct: 335 SIMLAIILVLIIVVAALGLR-SALLVGIAIPSSFLFSFLLLDLYGLTVNFMVMFAMVLAV 393

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           GL VD  I+V E    +  + ++   +      R +  I  S  T L A V   F+    
Sbjct: 394 GLLVDGAIVVVEYADRKLAEGETRKQAYASAGKRMFWPIVSSTGTTLAAFVPFLFWNSIP 453

Query: 485 VRGFAI---TMGLSILISMFTAISIVRAMMIFIIRYK 518
            +  A    T+   +  ++  A+  +  +     R  
Sbjct: 454 GQYMAFLPLTLIFVLSSALVMALIFLPTLGSVFGRKG 490



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 78/250 (31%), Gaps = 5/250 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            L    +  V L  V S   + +  D   +        L  ++    + +     +  + 
Sbjct: 243 PLTRSGDTVVTLQDVASVRRTFKDADSFARYNGAPAYTLQVVRRSGENIMETAAAVRALT 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +     P +   +  +      R+ ++     ++++ I +LI +        AL     
Sbjct: 303 NEAATNWPETIRHDFSLDLSTYVRDSLQSLTSSIMLAIILVLIIVVAALGLRSALLVGIA 362

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +      +     L+G+  N   + A++  +G  V+  +VV +      +      + + 
Sbjct: 363 IPSSFLFSFLLLDLYGLTVNFMVMFAMVLAVGLLVDGAIVVVE---YADRKLAEGETRKQ 419

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI--PMAFGIVVAASSSIFIAA 817
               +        V ++     + +P   W        A        ++ +A     I  
Sbjct: 420 AYASAGKRMFWPIVSSTGTTLAAFVPFLFWNSIPGQYMAFLPLTLIFVLSSALVMALIFL 479

Query: 818 PILLFIYDWR 827
           P L  ++  +
Sbjct: 480 PTLGSVFGRK 489



 Score = 43.5 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 28/212 (13%), Positives = 68/212 (32%), Gaps = 8/212 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +  N       + + +       I   +    K  L+              + E+    
Sbjct: 783 DLRVNTSTGAVPISNFVTREARQRIDSISRRDGKRVLIVRANADEGYAGNLLLTELRDWI 842

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIV---GVIISAIAMLIYIWIRFKWYFALGAIT 698
              I   +  ++ EI       E    G      ++ S   M + +  +F  ++ +    
Sbjct: 843 DAGIADGTFPRSVEINYLGADEENAEAGAFFGSAMLASLFMMAVILLWQFNNFWHVVLTL 902

Query: 699 TLILDITKTLGFFALFGIE-FNLTAVA-AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++     +    +      ++  +   V+TL G  VN+ +V+ D      +L    + 
Sbjct: 903 QAVVLSVVGVLLGVMLTFPYISILFLGTGVVTLAGIVVNNNIVLIDTF---QRLRGLGMP 959

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             + I ++  + L   + T++     +LPM  
Sbjct: 960 VDEAIVRTAAQRLRPVMLTTITTIFGLLPMVF 991


>gi|198282258|ref|YP_002218579.1| acriflavin resistance protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198246779|gb|ACH82372.1| acriflavin resistance protein [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 1028

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/592 (11%), Positives = 155/592 (26%), Gaps = 46/592 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + L  ++   GL       L    +  +P                         
Sbjct: 9   RRPILAISLSLVLFFFGL-----RSLGLMPITEYPPTNSSMIT---------VTTHYFGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               VN F+    ++                   + +TL             +V   +  
Sbjct: 55  TPKTVNAFITAPLEKAVGQAPGINYMTAVSEDGISILTLYMRMGEDPNAALSQVQSKVNT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST- 180
           V ++L     + ++   +     ++L   +         + +  + R     I       
Sbjct: 115 VLNQLPKGVMQPVVQEMSGSGAYLMLLSYHGKGFNQQ--QITDYLTRVVQPAIQSVPGVG 172

Query: 181 -----IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                    G +     +    DP  +  L  T  ++S      +          ++   
Sbjct: 173 LTSILPPGTGPNGNTYAMRIWLDPQEMSVLGITPEQISTALKQNDFVAAVGRLRGQYTAV 232

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S      +    E                      ++    +            +     
Sbjct: 233 SLSANTALHSAAEF--------------------RNLVVATVHGVPIRLGQVAKVSLGAQ 272

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                 ++                +     +    + A L +   P              
Sbjct: 273 TYDSSVMVDGQPAVNIGIQQAPGSNALNVSQGIQKVMAQLDSTMPPGMKGYTIYNGAQFV 332

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    +   A+   +V++V++  +   +  +V   +I + ++  + +L  LG TL L 
Sbjct: 333 KSSLQEVEVNIALALLVVILVIYFFMGSWRALIVPVLAIPVAMVGAVTILHALGYTLNLL 392

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++  +VL IGL VD  I+V E +        +   +  +      S I     T +    
Sbjct: 393 TLLAMVLAIGLVVDDAIIVVENVHRHIENGATPLHAALLSARELASPILVMATTLVAVFA 452

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI-NPLSRF 531
            + F G   G     FA T+  ++L+SM  A+++   +   +++      +         
Sbjct: 453 PMAFIGGLVGHLFSEFAFTIVATVLLSMVAALTLAPMLASRVLKAGHEGRMAHLVDQLFG 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
            L      + F   R W   +++   +              +       +  
Sbjct: 513 RLKAFYGRVLFASLRVWPATVTLALILTVGIYFLFSISQSELAPPANQGIVY 564



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 87/236 (36%), Gaps = 7/236 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P+ L  V       Q  D S          +   Q    +++  ++ ++ V  ++   +P
Sbjct: 258 PIRLGQVAKVSLGAQTYDSSVMVDGQPAVNIGIQQAPGSNALNVSQGIQKVMAQLDSTMP 317

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK 706
                 T   G +  +  +++  V + ++ + +++ I+     W   +  +  + + +  
Sbjct: 318 PGMKGYTIYNGAQFVKSSLQEVEVNIALALLVVILVIYFFMGSWRALIVPVLAIPVAMVG 377

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +      G   NL  + A++  IG  V+D ++V + +    +      +       S  
Sbjct: 378 AVTILHALGYTLNLLTLLAMVLAIGLVVDDAIIVVENVH---RHIENGATPLHAALLSAR 434

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPI 819
           E     +  +        PMA  GG V      FA  +   ++++  +++ +A  +
Sbjct: 435 ELASPILVMATTLVAVFAPMAFIGGLVGHLFSEFAFTIVATVLLSMVAALTLAPML 490



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 50/141 (35%), Gaps = 9/141 (6%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--YDRMRK 746
             +  AL  +T + + +   L   AL     N+ +   ++ LIG      +++  + R+ +
Sbjct: 880  SFRDALVVLTAVPVALFGALLPIALGASSVNIYSEVGMVMLIGLIAKQGILIVQFARVMQ 939

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAF 803
              K +    +  +         L   + T  A     +P+    G       S  + +  
Sbjct: 940  EEKHFDRRHAVAEAAIL----RLRPILMTVAAMIAGAIPLLFASGGNADARFSMGLVIVS 995

Query: 804  GIVVAASSSIFIAAPILLFIY 824
            G+   +  S+F+     ++  
Sbjct: 996  GLGFGSLVSLFVIPAFYVWFG 1016


>gi|171056835|ref|YP_001789184.1| CzcA family heavy metal efflux protein [Leptothrix cholodnii SP-6]
 gi|170774280|gb|ACB32419.1| heavy metal efflux pump, CzcA family [Leptothrix cholodnii SP-6]
          Length = 1047

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 98/715 (13%), Positives = 215/715 (30%), Gaps = 62/715 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   ++   +++   G + AL     ++ +D FP       +   L   GG       
Sbjct: 10  LHNRLLVLAFAAILMVYGAMTAL-----RTPVDVFPDL--NKPLVTVLTEAGGM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   + +        +       +   F            V   L 
Sbjct: 57  -APEEVEQLVTFPLETALNGMPGVTRVRSTSGVGLAVVYAEFDWGTDIYRNRQLVAERLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLS---QNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            V  +L      ++   ++     ++L+       D   +  ++           ++   
Sbjct: 116 LVREQLPAGINPSMGPVSSIMGEVMLLALPLDGGKDGARATPMQAREYADFVLRPRLLSI 175

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q +     + QL  E D +R+ Q   + +++       +++  G    +       
Sbjct: 176 PGVSQVIPIGGDVRQLRVEPDTARMAQFGVSLSQIESALQGFSSNAGGGFIDLNSREYLI 235

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +        ++ G+ +                       G     E             
Sbjct: 236 RHIGRTNRVEDLQGLAVA-------------------WSGGRAILLEQVASVRYAAGQKR 276

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            DG     P +  +I    A  +   T +    L  + +     +    V  R     L 
Sbjct: 277 GDGGYNGVPAVVVSIQKQPAADTVRLTRDIESALDELKQGRPAGLSEPRVLFRQADFILA 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S           A +V IVLF  +L  +  L++  +I L++ +T  +L L+G ++ + ++
Sbjct: 337 SVGNVSEALRDGAVMVAIVLFAFLLSARTTLISLVAIPLSLAVTALILKLMGQSINVMTL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITAL 471
            G+ + IG  VD  ++  E I    ++N+       +   +        S I  + I   
Sbjct: 397 GGLAIAIGELVDDAVVDVENILRRLKQNRALARPLPLLEVVRQASVEVRSGIVYATIIVA 456

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           +  V LF      G       I   +SIL SMF ++++   +  +++   K      +P+
Sbjct: 457 LVFVPLFALPGIEGRLFTPLGIAYIVSILASMFVSMTVTPVLCSYLLPRMKRLGHGDSPV 516

Query: 529 --SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L    +   F RAR       +   + +  + +          +G + LG++ N
Sbjct: 517 VARLKRLDERLLNWSFARARLLMSLAVMAVVVAATTVPYFPRAFLPPFNEGSLVLGMVFN 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               L+          + +   Q          R      D  A+      +   +    
Sbjct: 577 PGTSLAEANRM---GSLAETLIQEVPEVTQVGRRTGRAELDEHAEGVHSAEIDVDLKRSD 633

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
                    +           +  + V+ + +A+   I  R       + A   L
Sbjct: 634 RNREQIMAHL-----------RAKLAVLPAQVAIGQPISHRLDHLLSGVRAQIAL 677



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 89/262 (33%), Gaps = 14/262 (5%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           + GG  + +     V  +  +   +    G  +      ++     ++       A   +
Sbjct: 254 WSGGRAILLEQVASVRYAAGQKRGDGGYNGVPAVVVSIQKQPAADTVRLTRDIESALDEL 313

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
            +     ++E   L    +  +       E +R G V V I   A L+           L
Sbjct: 314 KQGRPAGLSEPRVLFRQADFILASVGNVSEALRDGAVMVAIVLFAFLL------SARTTL 367

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKL 750
            ++  + L +  T     L G   N+  +  +   IG  V+D VV    +  R+++N + 
Sbjct: 368 ISLVAIPLSLAVTALILKLMGQSINVMTLGGLAIAIGELVDDAVVDVENILRRLKQN-RA 426

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVV 807
               +   +++ ++  E     VY ++   +  +P+    G     F    I     I+ 
Sbjct: 427 LARPLPLLEVVRQASVEVRSGIVYATIIVALVFVPLFALPGIEGRLFTPLGIAYIVSILA 486

Query: 808 AASSSIFIAAPILLFIYDWRAK 829
           +   S+ +   +  ++     +
Sbjct: 487 SMFVSMTVTPVLCSYLLPRMKR 508



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 57/149 (38%), Gaps = 6/149 (4%)

Query: 687  RFKWYFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
            R+K     G I   I L +  ++    + G+  ++ ++   +TL G S  + ++      
Sbjct: 881  RYKSMVLAGIIMANIPLALIGSVVAMWIAGVSLSVASMVGFITLAGISTRNGILKVSHYV 940

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPM 801
               +L         ++  S+ E L   + T++ A  ++ P+ +     G  ++   A+ +
Sbjct: 941  NLCRLEGEQFGPAMVVRGSL-ERLTPVLMTALVAAFALTPLLLSADAPGKEILHPVAVVI 999

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              G+V +      +   + L       + 
Sbjct: 1000 FGGLVSSTLLDTLLTPVLYLKFGRKATER 1028


>gi|148546188|ref|YP_001266290.1| multidrug efflux protein [Pseudomonas putida F1]
 gi|148510246|gb|ABQ77106.1| acriflavin resistance protein [Pseudomonas putida F1]
          Length = 1014

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/474 (12%), Positives = 141/474 (29%), Gaps = 29/474 (6%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           +         +  +  +         RQ  + I++        + +
Sbjct: 45  ITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARVGADSDRL 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++      V +KL  D +  +L        +++       ++ +   + +  + R   
Sbjct: 105 FTELLAKANEVRNKLPQDSEDPVLSKEAADASALMYVSFYSKEMSN--PQITDYLSRVIQ 162

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++       +       +  +    DP +L     +   ++      N           
Sbjct: 163 PKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGE 222

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           ++  S      ++                      +    +     G  R        + 
Sbjct: 223 YVVTSVNASTELKSA--------------------EAFAALPLKTSGDSRVLLGDVARVE 262

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                                       +    I+    +   L +         +    
Sbjct: 263 MGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVRRIMPELESQLPSALKVSIAYDA 322

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      +V++V+F+ +   +  L+   +I L++I  L  + ++G +
Sbjct: 323 TRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYS 382

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L L ++  +VL IGL VD  I+V E I     + +S F +   G       +    IT  
Sbjct: 383 LNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSPFDAALEGAREIAMPVVSMTITLA 442

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
                + F     G   + FA+T+  +++IS   A+++   M   ++R ++  S
Sbjct: 443 AVYAPIGFLTGLTGALFKEFALTLAGAVVISGIVALTLSPMMCALLLRREQNPS 496



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  + T+ L +   L F  + G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 LRSVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 S  D   +   E     V  ++       P+       G++   FA+ +A  +V
Sbjct: 412 HMEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVV 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++   ++   +P++  +   R +N
Sbjct: 472 ISGIVAL-TLSPMMCALLLRREQN 494



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 63/162 (38%), Gaps = 6/162 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALLPLFLGVSSMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N       +S R+ I+++    L   + T+ A    ++P+ +    
Sbjct: 911  ISKHGILIVE--FANQLRDERGLSVREAIEEAAAIRLRPVLMTTAAMVFGMVPLILATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G        + +A G+ +    ++F+   +   +    +  A
Sbjct: 969  GAVSRFDIGMVIATGMSIGTLFTLFVLPCVYTLLAHKASAKA 1010


>gi|323967520|gb|EGB62936.1| CzcA family protein heavy metal efflux pump protein [Escherichia
           coli M863]
 gi|327254252|gb|EGE65874.1| cation efflux system protein cusA [Escherichia coli STEC_7v]
          Length = 1047

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKNALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  E +  ++   +   G+
Sbjct: 636 WRPGMTMEKIIEELDNTVRLPGL 658



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 91/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +          ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMDFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLDNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|315179698|gb|ADT86612.1| hypothetical cation efflux system transmembrane protein [Vibrio
           furnissii NCTC 11218]
          Length = 1047

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 74/643 (11%), Positives = 167/643 (25%), Gaps = 39/643 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N +LV++ ++    G L ++     Q+ +D  P       I                   
Sbjct: 12  NRFLVLVATIALIAGGLFSV----KQTPVDAIPDLSDVQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F D         +V  +L  V 
Sbjct: 59  QVVEDQVTYPLTTAMLAVPGAVTVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            KL  + K  L    T                     +           ++       + 
Sbjct: 119 PKLPANAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAQLRSLQDWFLKYELQTVAGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q   + DP++LR    T  +++      N      +  V            +
Sbjct: 178 ATVGGMVKQYQIQIDPAKLRAYNLTLQQVNAAIQNGNQETGASVIEVAEAEHMVRTTGYL 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +I                    + +     G         D    P        + 
Sbjct: 238 TGIEDI------------------QSLPLKVTSKGTPLLLGDIADITLGPQMRRGISELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   +   +   + +  I         L+         +           +     
Sbjct: 280 GEGEAVGGVIVMRYGENASQVIANVKAKLDSLQGSLPSGVEIVPTYDRSTLINSAVENLW 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
              A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI + 
Sbjct: 340 KKLAEEFIVVAIVCALFLFHMRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG  VD  I++ E + +   +    +++ +  +          +F S I   ++ V +F 
Sbjct: 400 IGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGDAAQEVGPPLFFSLIIITLSFVPVFA 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  S   AI++V  +M + IR   +             +  
Sbjct: 460 LEGQEGKMFSPLAFTKTYAMAASAGLAITLVPVLMGYFIRGNILPEHKNPVNKALVSLYR 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +    +R     + +++     +       G  +      G  + +    P        
Sbjct: 520 PLLNLSLRYPKTVIAVAVALMASAYYPTSQLGSEFIPPLDEGDLMYMPTTYPGISIGKAR 579

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            L       I            +       D    T +  +++
Sbjct: 580 ELLQQTNKLIKTVPEVNTVWGKIGRAETATDPAPLTMIETVIQ 622



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 86/287 (29%), Gaps = 20/287 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADVRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  +         T         +    L     V V I
Sbjct: 816  WVFVDIDGRDLGSYVAEAQRVVADQLKLPAGYSLTWSGQYEYMERAKDRLS----VVVPI 871

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA--VLTLIGYS 733
            +   +++ ++  F+       I    L +    G + ++ ++++L+       + L G +
Sbjct: 872  TLTIIMLLLYFSFR-RVGEVLIIMATLPLAMVGGLWLMYSLDYHLSIAVGVGFIALAGVA 930

Query: 734  VNDKVVV---------YDRMR-KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++         Y +++ +  +   T     D I +     +   + T M   I +
Sbjct: 931  VEIGVIMLVYLNQAWHYTKLKAQERQTNLTRQDLNDAIREGAGLRVRPVMMTVMTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +P+      G  V+   A PM  G+  A   ++ +   I        
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQRE 1037



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 11/239 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L       IS  N +GE    V +     ++      ++     +   +P         
Sbjct: 266 TLGPQMRRGISELNGEGEAVGGVIVMRYGENASQVIANVKAKLDSLQGSLPSGVEIVPTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLINSAVENLWKKLAEEFIVVAIVCALFLFHMRSSLVIALSLPVGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I  +  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGDAAQEVGP 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              ++ +   +S +P+    G     F+ P+AF    A ++S  +A  ++  +  +  +
Sbjct: 442 PLFFSLIIITLSFVPVFALEGQEGKMFS-PLAFTKTYAMAASAGLAITLVPVLMGYFIR 499


>gi|187922367|ref|YP_001894009.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
 gi|187713561|gb|ACD14785.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
          Length = 1060

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 153/573 (26%), Gaps = 29/573 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           D+     +  Y   L   +        +       I + F      +    +VT   Q  
Sbjct: 57  DEMEKRIVLNYERGLSVAVNDIEHTESTSLNGIAVIKIFFQPHANIDEALAEVTALSQTQ 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L        ++      + I+    +   +     E           Q+        
Sbjct: 117 LRSLPPGITPPNILRYNASTVPILRLALSSASLTEQ--ELYDFGNNFLKTQLATVPGASA 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L       Q+  + D  +L++   +   +       N         +     S      
Sbjct: 175 PLPYGGKQRQIMVDIDSRKLQERNLSPMDVVNAVTAQNLILPSGTAKIGSTEYSVEMNGS 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +    +                     +I          +     ++        +   
Sbjct: 235 PDSLAGL--------------------NNIPIKSTANGTVYIRDVAHVRDGFQPQTNIVR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +          +     S    ++    +   LR                     S    
Sbjct: 275 VNGQRAALLTINKSGNTSTLEIVDRIKSMMPTLRNLVPASLNIDPVADQSLFVRASVQGV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A L  +++ + +   +  L+   SI L++I ++  LSLL  T+ + ++ G+ L
Sbjct: 335 LREALIAACLTGLMILLFLGNWRATLIIAVSIPLSMITSIIALSLLDETINIMTLGGLAL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E I  +  + +++  ++  G  +       S ++  I  V +F   G
Sbjct: 395 AVGILVDDATVAIENISHQLEQGKTLEQAILDGAHQIAIPTLVSTLSICIVFVPMFLLTG 454

Query: 483 GAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDINPLSRFFLIP 535
            A       A  +  ++L S F + ++V  +  +++RY               + F  + 
Sbjct: 455 VAHYLFIPLAEAVVFAMLASYFFSRTLVPTLAKYLLRYHHRPADLHHTPAQTRNPFMRVH 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 F R R                 +    +  G        LG      VD   + 
Sbjct: 515 YAFEGGFARLRERYRVFLEARVARPGLFMTLFLVCCGASMLLMPFLGRDFFPAVDAGTIA 574

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +L +     +       ++      Q  P   
Sbjct: 575 LHLRAKTGMRVEETAVVTDRVDTRIRQLIPPGE 607



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 61/155 (39%), Gaps = 4/155 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    ++ L +  ++   +L     N+  +  +   +G
Sbjct: 338 ALIAACLTGLMILLFLGNWRATLIIAVSIPLSMITSIIALSLLDETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +           +    I    ++    ++ ++++  I  +PM +  G
Sbjct: 398 ILVDDATVAIENI---SHQLEQGKTLEQAILDGAHQIAIPTLVSTLSICIVFVPMFLLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                F IP+A  +V A  +S F +  ++  +  +
Sbjct: 455 VAHYLF-IPLAEAVVFAMLASYFFSRTLVPTLAKY 488



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 63/169 (37%), Gaps = 7/169 (4%)

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
            +   +       G++ + + + + I + F  W      IT L   +   +    L     
Sbjct: 877  QTMNDSFSGLFAGLVFAILLVYLLIVVNFQSWLDPFIIITALPGALAGIVWMLFLTHTTL 936

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            ++ A+   +  IG +  + ++V    R+ +  +    + R  I+          + T++A
Sbjct: 937  SIPALTGAIMCIGIATANSILVISFAREQLLEH--GDATRAAIEAGFTR-FRPVLMTALA 993

Query: 779  AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
              I ++PMA+    GG         +  G+ +   +++     +   IY
Sbjct: 994  MVIGMVPMAIGLGEGGEQNAPLGRAVIGGLTIGTLATLIFVPVVFSMIY 1042


>gi|150016414|ref|YP_001308668.1| preprotein translocase subunit SecD [Clostridium beijerinckii NCIMB
           8052]
 gi|149902879|gb|ABR33712.1| protein-export membrane protein SecD [Clostridium beijerinckii
           NCIMB 8052]
          Length = 421

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 79/223 (35%), Gaps = 4/223 (1%)

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           S+ + D                         +             +       +   VG 
Sbjct: 178 SIYLDDEEISTARVNSQISGGKASIETHDTLEKNKELAGMINAGALPLPVKEVSVSNVGA 237

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           ++        +   II    + +++   ++    L A   L L IT TL  F   G+   
Sbjct: 238 ELGATAFPNSVKAGIIGVGLVFLFMLFHYRIQ-GLMANIALTLYITLTLFAFIEVGVTLT 296

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           L  +AA L  IG +V+  ++ ++R ++ +K      + +  + K     L   V ++M  
Sbjct: 297 LPGIAAFLLTIGVAVDANILTFERTKEELK---KGYTVKAAVKKGSEHALSSIVDSNMTT 353

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            ++ L +   G   +  FAI +  GIV++  + + +   ++  
Sbjct: 354 LLASLILYFIGSGAVKGFAITLMIGIVISLFTGLVVTKVLVNL 396



 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 114/381 (29%), Positives = 199/381 (52%), Gaps = 26/381 (6%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +   D V +  ++ + E +  R++++G++E+ +   G  RI + +PG  +   +   
Sbjct: 55  VLMEIQKDDVTAEELQSAKEHLSLRVNKLGVAETIVATEGPKRIRVDVPGLTNSKEIVDS 114

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           L  +  +SF                             +    ++G  +  ATA  + + 
Sbjct: 115 LVKSGNLSF--------------------------KGPDGTEILTGSDVKKATAQMNQQN 148

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
               V +  ++ GA++F + T   IG+ +++ LD   ++   +N  I  GKA I  + T+
Sbjct: 149 GGYEVGLELNDEGAQKFADATGKYIGQNISIYLDDEEISTARVNSQISGGKASIETHDTL 208

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E    LA M+ AG+LP+ +  V   NVGA+LG+ +      A + G+ L+ LFM+  Y  
Sbjct: 209 EKNKELAGMINAGALPLPVKEVSVSNVGAELGATAFPNSVKAGIIGVGLVFLFMLFHYRI 268

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+A+ ++ L + LTL     +G TLTLP IA  +L IG+AVD+NIL  ER +EE +K 
Sbjct: 269 QGLMANIALTLYITLTLFAFIEVGVTLTLPGIAAFLLTIGVAVDANILTFERTKEELKKG 328

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            +V  ++  G   A S+I DSN+T L+A+++L+F G GAV+GFAIT+ + I+IS+FT + 
Sbjct: 329 YTVKAAVKKGSEHALSSIVDSNMTTLLASLILYFIGSGAVKGFAITLMIGIVISLFTGLV 388

Query: 506 IVRAMMIFIIRYKKMKSIDIN 526
           + + ++   +    +      
Sbjct: 389 VTKVLVNLAVESGIINKPSHF 409



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 71/418 (16%), Positives = 124/418 (29%), Gaps = 24/418 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +    +L  +I  IGLL              F S      I+ GLDL+GG  +++E+ 
Sbjct: 3   RKSKSSALLILIIAVIGLLAFAGFKGFVLGGWEFKSF--DKVITRGLDLQGGVSVLMEIQ 60

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQ 120
           +DD     LQ   + L   + K G+    +      +I +        + I D +     
Sbjct: 61  KDDVTAEELQSAKEHLSLRVNKLGVAETIVATEGPKRIRVDVPGLTNSKEIVDSLVKSGN 120

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               K     +        +    +    N  +      +E + E  ++  D  G     
Sbjct: 121 LSF-KGPDGTEILTGSDVKKATAQM----NQQNGGYEVGLELNDEGAQKFADATGKYIGQ 175

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              +      I            Q+ G  A +  H  L  N +   M     L       
Sbjct: 176 NISIYLDDEEISTARVN-----SQISGGKASIETHDTLEKNKELAGMINAGALPLPVKEV 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +     E+              K     V + F  M      +    NI   L + L  
Sbjct: 231 SVSNVGAELGAT-----AFPNSVKAGIIGVGLVFLFMLFHYRIQGLMANIALTLYITLTL 285

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +   +P   A +        A IL        L     +      G++    S
Sbjct: 286 FAFIEVGVTLTLPGIAAFLLTIGVAVDANILTFERTKEELKKGYTVKAAVKKGSEHALSS 345

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           I       +         +I+ +   G V  F+I L + + ++L + L  T  L ++A
Sbjct: 346 IVDSNMTTLLAS------LILYFIGSGAVKGFAITLMIGIVISLFTGLVVTKVLVNLA 397


>gi|330910334|gb|EGH38844.1| cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Escherichia coli AA86]
          Length = 1047

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +    + +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWSIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A +       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLADVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|325963776|ref|YP_004241682.1| heavy metal efflux pump, cobalt-zinc-cadmium [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469863|gb|ADX73548.1| heavy metal efflux pump, cobalt-zinc-cadmium [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 1077

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 59/510 (11%), Positives = 145/510 (28%), Gaps = 38/510 (7%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
             L ++I     +  +         +  PS        L           +     + V+
Sbjct: 12  RALIALITVFASVFGVITM-TSLKQELIPSIEFPQITVL---------TAMPGASPEVVD 61

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   + ++       + R   ++IT+ F      +   +++   +      L 
Sbjct: 62  KQVSGPLETALNGVEGLESTSSTSRNGVSQITMVFTYGANLDRARNQIDRAISNAKRTLP 121

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            D +   +   +  +  IV    + D+      E + ++ R  + ++   +       + 
Sbjct: 122 EDVQPQAIA-GSISDFPIVFLAVSSDKP---LSELNADLQRLSVPRLQKIDGVRGADVTG 177

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                +        +     T   +                         GN   +    
Sbjct: 178 GASQHIEILPRTDAMAAAGATLTSIRDAL---------------------GNNGALIPAG 216

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +       +     P      +               +  ++                 
Sbjct: 217 TLEEQGKTLSLQIGSPVDSLDAIRALPLSGAKNAATIGSVADVSLKDDERTSITRTNGAE 276

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                 + K +                L A                    S         
Sbjct: 277 TLAVSVTKKPEGDTVAISHAVKDSLDELEAELGSNAKFTPVFDQAPFIEKSIKDLTTEGL 336

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           +  G  + V+ + ++  +  LV   SI L++++T   LS  G +L + ++  + + IG  
Sbjct: 337 LGLGFAVAVILVFLMSTRSTLVTAVSIPLSLLITFIGLSATGYSLNILTLGALTIAIGRV 396

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGA 484
           VD +I+V E I+      +    ++          I  S +T +   + + F G   G  
Sbjct: 397 VDDSIVVIENIKRHLSYGEDKVTAILTAIREVAGAITASTLTTVAVFLPIAFVGELAGEL 456

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFI 514
            R FA+T+ +++L S+  +++IV  +  + 
Sbjct: 457 FRPFALTVTMALLASLLVSLTIVPVLAYWF 486



 Score = 80.9 bits (197), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 85/239 (35%), Gaps = 7/239 (2%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +         +                       V   V+K++ ++     +        
Sbjct: 796  ASVEQVDVPVSITASNGQRTARVSVTPSGSNLGAVNAEVQKRLADVQLPPGVTAEIGGAT 855

Query: 660  KISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEF 718
               +E  ++  + ++ +   + + +   F      L  + ++    T  +    + G+  
Sbjct: 856  TQQQESFQQLGLALLAAIAIVYVIMVATFKSLIQPLILLVSVPFAATGAVALLLVTGVPL 915

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTS 776
             L ++  +L L+G  V + +V+ D + +    +     ++  D I     + L   + T+
Sbjct: 916  GLPSLIGMLMLVGIVVTNAIVLIDLINQYRQPRDGRPGMTVADAITHGSRQRLRPILMTA 975

Query: 777  MAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +A   ++ PMA+    GG  I    A+ +  G++ + + ++ +   +   +   R + A
Sbjct: 976  LATVFALTPMALGLTGGGGFISQPLAVVVIGGLISSTALTLVLVPVLYRLVEGRRERKA 1034



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/175 (17%), Positives = 71/175 (40%), Gaps = 9/175 (5%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A    L+ ++ ++      + + +      K  ++L  +G++G+  +   +L+++     
Sbjct: 296 AVKDSLDELEAELGSNAKFTPVFDQAPFIEKSIKDLTTEGLLGLGFAVAVILVFLM---S 352

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    ++ L +  T    +  G   N+  + A+   IG  V+D +VV + ++   +
Sbjct: 353 TRSTLVTAVSIPLSLLITFIGLSATGYSLNILTLGALTIAIGRVVDDSIVVIENIK---R 409

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
             +        I  +I E  G    +++      LP+A  G   G +   FA+ +
Sbjct: 410 HLSYGEDKVTAILTAIREVAGAITASTLTTVAVFLPIAFVGELAGELFRPFALTV 464



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/470 (9%), Positives = 130/470 (27%), Gaps = 49/470 (10%)

Query: 74   SDELRSFLKKEGIGVFSM----------RQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +E+   ++       +               +  + +F     ++   +++   ++   
Sbjct: 595  LEEVLRGIEGIKDVQVTSGNAQAGFAALTSTGSSNS-TFTVVTDEKADQEELQNTVRSEL 653

Query: 124  SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            S++    K ++             S      + + + +   E     ++ +     T + 
Sbjct: 654  SQVPDSGKVSVGTQQGG----FGTSSTVDITLKAASTDDLREASDTMVEAMTGVPGTSEV 709

Query: 184  LGSHRILIQLPGEQ-DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +   + D ++         +++       +                     
Sbjct: 710  ETNLAASQPVVQVKVDRAKAVAAGLNEEQVAGVLASTISPIPAGE--------------- 754

Query: 243  VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                V I               T    V               +  ++   + V +    
Sbjct: 755  ----VRIDTDDFPVQIGQGTRFTSIEAVRRIPLPAAGGPVTLGSIASVE-QVDVPVSITA 809

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   +   +      G    E    LA +         +             S    
Sbjct: 810  SNGQRTARVSVTPSGSNLGAVNAEVQKRLADVQLP----PGVTAEIGGATTQQQESFQQL 865

Query: 363  KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                     +V +++          L+   S+       +ALL + G  L LPS+ G+++
Sbjct: 866  GLALLAAIAIVYVIMVATFKSLIQPLILLVSVPFAATGAVALLLVTGVPLGLPSLIGMLM 925

Query: 423  GIGLAVDSNILVNERIREENR-----KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +G+ V + I++ + I +  +        +V  ++  G  +    I  + +  + A   +
Sbjct: 926  LVGIVVTNAIVLIDLINQYRQPRDGRPGMTVADAITHGSRQRLRPILMTALATVFALTPM 985

Query: 478  FF----FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
                   GG   +  A+ +   ++ S    + +V  +   +   ++ K++
Sbjct: 986  ALGLTGGGGFISQPLAVVVIGGLISSTALTLVLVPVLYRLVEGRRERKAL 1035


>gi|296106626|ref|YP_003618326.1| chemiosmotic efflux system protein A (CzcA) [Legionella pneumophila
           2300/99 Alcoy]
 gi|295648527|gb|ADG24374.1| chemiosmotic efflux system protein A (CzcA) [Legionella pneumophila
           2300/99 Alcoy]
          Length = 1070

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 80/535 (14%), Positives = 164/535 (30%), Gaps = 54/535 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N P ++ L  ++C +G        L +  +D FP   P               +V++ 
Sbjct: 10  LHNRPLILALTIILCLLGGYT-----LKRMPVDVFPEFAPP-------------QVVVQT 51

Query: 61  DEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                    V   +    +   +                + IT+ F D          V 
Sbjct: 52  QAPGMATQDVETLVTYPLESAINGTPGVASVRSKTSVGLSTITVVFDDKTDIYRNRQLVN 111

Query: 117 LFLQGVNSKLNVDPKKNL-LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +Q V ++L       + L  T+     +  +  +           S   IR R+  +G
Sbjct: 112 ERIQQVVNRLPPGVSSPVMLPVTSAVGWLLKYALVSGSASPETLRTISDWTIRPRLLALG 171

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                   +     + Q      PSR+     T  ++                       
Sbjct: 172 ---GVASVVSLGGEVKQYQVRLIPSRMLAYGITVEEVRQALTT----------------- 211

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             GNQ +    V  +G     +T             +     G     +           
Sbjct: 212 --GNQNVPGAFVHQAGTEFVVSTIGRIKTLKDIKKTLIVVRNGVPITIDNVAAVAFGGEI 269

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              D        +   +       +   T +    LA + ++    I+L     R     
Sbjct: 270 KRGDASYNAEHAVIGTVSKIYGADTLTTTHKVEQALADIKKSLPAGIELITEVFRQANFI 329

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +           A +V+ VLF+ ++  +   +   S+ ++ I+ + +L   G  +   
Sbjct: 330 ESAIHNLTKALIEGAIIVIAVLFLFLMNWRASFITFLSMPVSFIVGILVLHYFGFGINSM 389

Query: 416 SIAGIVLGIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGFS---RAYSTIFDSNIT 469
           ++ G+ + IG  VD  I+  E +      NR +     ++++ F       S++  + I 
Sbjct: 390 TLGGMAIAIGEVVDDGIITVENVVHRLRLNRMSDKPLPAIEIVFDAVLEIRSSVVYATII 449

Query: 470 ALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             +  + +FF  G         AI    S+L S+  +I++V A+   ++  K  K
Sbjct: 450 ISLVFLPIFFLSGIPERIFSPLAIAYIASVLGSLVVSITMVPALCYLLLVRKSEK 504



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 80/261 (30%), Gaps = 10/261 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMV 638
            + V    P+ +  V +     +I                  +    D+     +V + +
Sbjct: 246 LIVVRNGVPITIDNVAAVAFGGEIKRGDASYNAEHAVIGTVSKIYGADTLTTTHKVEQAL 305

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAI 697
                 +     +              I      +I  + I + +       W  +    
Sbjct: 306 ADIKKSLPAGIELITEVFRQANFIESAIHNLTKALIEGAIIVIAVLFLFLMNWRASFITF 365

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTT 753
            ++ +     +     FG   N   +  +   IG  V+D ++    V  R+R N ++   
Sbjct: 366 LSMPVSFIVGILVLHYFGFGINSMTLGGMAIAIGEVVDDGIITVENVVHRLRLN-RMSDK 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAAS 810
            +   +++  ++ E     VY ++   +  LP+    G     F   AI     ++ +  
Sbjct: 425 PLPAIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGIPERIFSPLAIAYIASVLGSLV 484

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            SI +   +   +   +++  
Sbjct: 485 VSITMVPALCYLLLVRKSEKQ 505



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 89/258 (34%), Gaps = 9/258 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             + +           +    +  +++    F         ++ + +   +    + + E+
Sbjct: 805  NMLIDAHGTENQKTKIPLRAVADIRLEPQPFAINRENVQRVLVIAFNVQERDLGSVIQEV 864

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
             ++   ++   S          +  ++  R  I+   ++   MLI +   F   F    +
Sbjct: 865  QQRVKEKVTLPSGYFIQYGGQFESQQQASRVIILFGALAVFIMLILLHKAFG-TFREALL 923

Query: 698  TTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
                L +    G  +LF  G   ++ A+   +TL G +  + +++        +L     
Sbjct: 924  VMFNLPLALIGGVISLFLAGANMSVAAMIGFITLFGIAARNGIILVSHYN---QLRVQGQ 980

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
                ++ +   + L   + T+  A + ++P+      G  +    A  +  G+  +   +
Sbjct: 981  PREQVVIQGTLDRLVPVLMTAATAALGLIPLLWGSPAGKELERPLAQVLLGGLFTSTVLN 1040

Query: 813  IFIAAPILLFIYDWRAKN 830
            +F+   +   I  WR + 
Sbjct: 1041 MFVVPTVYNAIEVWREQR 1058


>gi|153955751|ref|YP_001396516.1| preprotein translocase subunit SecD [Clostridium kluyveri DSM 555]
 gi|219856119|ref|YP_002473241.1| hypothetical protein CKR_2776 [Clostridium kluyveri NBRC 12016]
 gi|146348609|gb|EDK35145.1| Hypothetical protein CKL_3137 [Clostridium kluyveri DSM 555]
 gi|219569843|dbj|BAH07827.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 424

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 30/207 (14%), Positives = 82/207 (39%), Gaps = 4/207 (1%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           + +         G+   +    +    K   +         + VG  +    +   I+  
Sbjct: 193 DAHITDGKAIISGNMTLKEAQRKANLIKSGALPVTVKPVQVKTVGASLGANALPLSILAG 252

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I    +++++ + ++    L A   L L +   L  FA  G+   L  +A  L  +G +
Sbjct: 253 EIGIGLVMLFMLLYYRLP-GLIADIALALYVYIVLAAFANIGVTLTLAGIAGFLLTVGMA 311

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  +++++R ++ +K   +  + +  ID      +   + +++   IS   +   G   
Sbjct: 312 VDANILIFERTKEELK---SGRTIKASIDAGFRRAMTSILDSNITTIISGFILYSIGTGS 368

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPIL 820
           +  FA+ +  G +++  ++I +   ++
Sbjct: 369 VKGFALTLIIGTILSMFTAITVTRTLM 395



 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 120/381 (31%), Positives = 213/381 (55%), Gaps = 27/381 (7%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +     V    IE+++E++  R++++G+SE+ + R G +RI I +PG+ D   +   
Sbjct: 55  VLEEIQGKNVDESTIERTIELLSLRVNKLGVSETVVAREGKNRIRIDIPGKFDAKEVTDG 114

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG-ATANFDPK 264
           +  T ++ F                             ++K  ++G  +     +     
Sbjct: 115 VAKTGELKF--------------------------VGPDNKTILTGKDVKDATASLDSQN 148

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
           + + V+++ F++ G ++F + T   IGK + + LD  VLT P ++  I  GKA ISGN T
Sbjct: 149 SSQAVINLEFNKDGTKKFSDATAKFIGKKITIYLDEEVLTDPQVDAHITDGKAIISGNMT 208

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++ A   A ++++G+LP+ +  V+ + VGA LG++++     A   G+ L++LFM++ Y 
Sbjct: 209 LKEAQRKANLIKSGALPVTVKPVQVKTVGASLGANALPLSILAGEIGIGLVMLFMLLYYR 268

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
             GL+AD ++ L V + LA  + +G TLTL  IAG +L +G+AVD+NIL+ ER +EE + 
Sbjct: 269 LPGLIADIALALYVYIVLAAFANIGVTLTLAGIAGFLLTVGMAVDANILIFERTKEELKS 328

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAI 504
            +++  S+D GF RA ++I DSNIT +I+  +L+  G G+V+GFA+T+ +  ++SMFTAI
Sbjct: 329 GRTIKASIDAGFRRAMTSILDSNITTIISGFILYSIGTGSVKGFALTLIIGTILSMFTAI 388

Query: 505 SIVRAMMIFIIRYKKMKSIDI 525
           ++ R +M              
Sbjct: 389 TVTRTLMKLAANMGWFNHKQT 409



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 2/119 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +     +   +C I +     +      L  +        I+ GLDL+GG  ++ E+
Sbjct: 1   MK-SKVKSTIVFFLCLIIIGFLAYSGAYGVTLGGYELKPFSKVITRGLDLQGGVSVLEEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLF 118
              +     ++   + L   + K G+    + R+ +N+I +        + + D V   
Sbjct: 60  QGKNVDESTIERTIELLSLRVNKLGVSETVVAREGKNRIRIDIPGKFDAKEVTDGVAKT 118


>gi|239931734|ref|ZP_04688687.1| integral membrane efflux protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291440103|ref|ZP_06579493.1| integral membrane efflux protein [Streptomyces ghanaensis ATCC
           14672]
 gi|291342998|gb|EFE69954.1| integral membrane efflux protein [Streptomyces ghanaensis ATCC
           14672]
          Length = 1038

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/518 (11%), Positives = 157/518 (30%), Gaps = 39/518 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R +     L  ++  I L+      +PQ      P+                  ++   +
Sbjct: 6   RFSLAQRALIGLMSIIALVFGA-IAIPQLKQQLLPTIELPM-----------VSVIAPYQ 53

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D V   +    +     +           +    I  SF      E +   V   +
Sbjct: 54  GASPDVVEKQVVEPIEANLEAVDGISGITSKAGEGNAVIMASFDFGNDTEQLVADVQQAV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               + L       ++  +T+   ++VL+  +           + ++ R  +  +   + 
Sbjct: 114 NRARAMLPDAVDPQVVAGSTDDIPTVVLAVTSDKDQQ----ALADQLDRTVVPALKDIDG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q +      +Q+    D ++L +   T   ++               G   +     +
Sbjct: 170 VGQVMVDGVRELQVTVTPDDAKLAEAGLTPQALTQALQA----------GGATVPAGSFD 219

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           +      V++ G + +              + ++      +        ++ +  A    
Sbjct: 220 EGGANRTVQVGGGYTSIRQI--------EDLMVTGGPGKGKPVRLGAVADVEQREATADS 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                       + +     S          L   LR          V      A   + 
Sbjct: 272 LTRTNGSPSLAVVVTMDHDGSAVTISNAVADLLPDLREDLGSGAELTVVSDQGPAVSQAI 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                  A+     ++V+ + +   +  LV   SI L+V+L L +L     +L + ++  
Sbjct: 332 EGLTTEGALGLVFAVLVILVFLTSIRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGA 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + + IG  VD +I+V E I+      +    ++          +  + +T +   + +  
Sbjct: 392 LTIAIGRVVDDSIVVLENIKRHLGYGEERHEAIMKAVREVAGAVTSATLTTVAVFLPIGL 451

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            GG        F++T+  ++L S+  ++++V  +  + 
Sbjct: 452 VGGMVGELFGSFSLTVTAALLASLLVSLTVVPVLSYWF 489



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 8/223 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                               V   ++ +I  +   +              E     I+ ++
Sbjct: 796  DGQRSATVTARPIGDNTGAVSAELQTEINALTLPAGATAEIGGVTADQDEAFGNLILAML 855

Query: 675  ISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             +   + + +   F+     L  + ++    T  LG   + G    + A+  +L LIG  
Sbjct: 856  AAIAIVFMLLVGTFRSLAQPLILLVSIPFAATGALGLLLVTGTPMGVPAMIGMLMLIGIV 915

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
            V + +V+ D + +            + + +     L   + T++A   ++LPMA+     
Sbjct: 916  VTNAIVLIDLINQYR---DRGYGVVEAVLEGGRHRLRPILMTALATIFALLPMALGVTGE 972

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            GG +    A+ +  G++ +   ++ +   +   +   + + AR
Sbjct: 973  GGFIAQPLAVVVIGGLITSTLLTLLLVPTLYTMLELRKERRAR 1015



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 70/184 (38%), Gaps = 16/184 (8%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A   +L  +++ +     L+ + +      +    L  +G +G++ + + +L+++   
Sbjct: 297 SNAVADLLPDLREDLGSGAELTVVSDQGPAVSQAIEGLTTEGALGLVFAVLVILVFLT-- 354

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    ++ L +   L       +  N+  + A+   IG  V+D +VV + ++  
Sbjct: 355 -SIRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK-- 411

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +         + I K++ E  G     ++      LP+ + GG            G + 
Sbjct: 412 -RHLGYGEERHEAIMKAVREVAGAVTSATLTTVAVFLPIGLVGG----------MVGELF 460

Query: 808 AASS 811
            + S
Sbjct: 461 GSFS 464


>gi|225551738|ref|ZP_03772681.1| protein-export membrane protein SecD [Borrelia sp. SV1]
 gi|225371533|gb|EEH00960.1| protein-export membrane protein SecD [Borrelia sp. SV1]
          Length = 586

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 40/211 (18%), Positives = 89/211 (42%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +      +  K         I +  I+GP +    I  GI    ++   
Sbjct: 365 NVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++ + +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFMCVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRR---FENAFEDGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 572



 Score =  115 bits (286), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 129/493 (26%), Positives = 212/493 (43%), Gaps = 53/493 (10%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              I LGLDL GG  + + +D         +                            L
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRS---------------------------L 165

Query: 101 SFADSRF-KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +FA+       I   +   +           ++                           
Sbjct: 166 TFAEREDAIYRIMQILKDRVDRFGLTEPKIVREAGGNKIF-------------------- 205

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           ++   E    R+  +   +  +           L   +             + S +    
Sbjct: 206 LDIPGEKDESRVSALLSGKGNLTFYVVDDESTSLLHRKILEAGSLFSIPEIQASMNLPDS 265

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDK---VEISGIHLNGATANFDPKTHKPVVDISFDE 276
                 ++     + D    +Y V D        G H+  A  + DP+T +  V  S D 
Sbjct: 266 KQIFPWYVKDSYGVDDESSVRYYVVDASPENLFDGAHIKDAGVSNDPRTGRDTVAFSLDV 325

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGILAAML 335
            G+ +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + A  LA + 
Sbjct: 326 DGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEAQDLALVF 385

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           +  + P+ + I + R +G  LG+ +I  G  A    L L+ LFM V YG  G+VA FS+ 
Sbjct: 386 KTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCLVFLFMCVYYGLSGVVAGFSLV 445

Query: 396 L-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +    + + 
Sbjct: 446 IYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREGRRFENAFED 505

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++   R ++ FI
Sbjct: 506 GFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRFILEFI 565

Query: 515 IRYKKMKSIDINP 527
           I  +K K I I+ 
Sbjct: 566 ISVRKSKFISISW 578


>gi|323191211|gb|EFZ76475.1| cation efflux system protein cusA [Escherichia coli RN587/1]
          Length = 1047

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 171/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A +       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLADVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|331645732|ref|ZP_08346835.1| cation efflux system protein CusA [Escherichia coli M605]
 gi|331044484|gb|EGI16611.1| cation efflux system protein CusA [Escherichia coli M605]
          Length = 1047

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 171/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A +       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLADVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|271967440|ref|YP_003341636.1| hypothetical protein Sros_6163 [Streptosporangium roseum DSM 43021]
 gi|270510615|gb|ACZ88893.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
          Length = 1028

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 64/591 (10%), Positives = 162/591 (27%), Gaps = 50/591 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   + +L   +   G +  +            P+                   +     
Sbjct: 11  NRALVALLAIAVLIFGAIATMSLKQELLPSFSVPTVS--------------VTAIYPGAA 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E       +       R     +++ +      +     +   +  +
Sbjct: 57  PQIVERNVTEKIEEAVEGGAGQKRITSFSRDGLAGVSVEYDHGTDLDGAIQDLQQRIGRI 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L        +      E  ++      D         +  +  +   ++G  +   +
Sbjct: 117 QPELPSQVT-PRVAPGMSTEFPVLSLAATGDDERR----LARLLKERVPGELGGIDGVSR 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L S      +    D  RLR+   T   ++       +              +      
Sbjct: 172 VLVSGERAETVEIRLDQDRLRKWGLTADAVAATLGSSGSVVPVGTVTAGGESLALQVGES 231

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   ++ GIHL                        A +       ++            
Sbjct: 232 FDSLADVRGIHL------------------------APKVTLDDVADVRLVEERPETLTR 267

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        K   +     +        L           V          S    
Sbjct: 268 TDGRPSLSVSVMAKPTGNTVAIAKEVKQRLPELTRSLGGAATLTVAFDQSEFIEKSIGDL 327

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +  G   +++ + +   +  +V   SI L++++ L  L + G TL + ++  + +
Sbjct: 328 TTEGLLGLGFAALIILVFLFSFRSTVVTVVSIPLSLVVALIGLWVNGFTLNMLTLGALTI 387

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G  VD +I+V E I+      ++   ++  G       +  S +T +   + + F G 
Sbjct: 388 AVGRVVDDSIVVIENIKRHLDHGEAKLHAVQAGTREVAGAVTASTLTTVAVFLPIAFTGG 447

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----MKSIDINPLSRFFLIP 535
             G     FA+T+ +++L S+  +++++  +  + ++  K     + ++    S      
Sbjct: 448 ITGSLFSAFALTVTIALLASLLVSLTVIPVLAYWFLKTPKAGVAREVVEARERSGVLQRV 507

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               I F   R W   ++ L  + +   +        +   G     V   
Sbjct: 508 YVPVIGFAVRRRWVTLLAALGILVATGGMAGRLTTDFLGSSGQDTFQVRQE 558



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 70/178 (39%), Gaps = 7/178 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + L  + + +     L+   +      K   +L  +G++G+  +A+ +L+++   F
Sbjct: 291 KEVKQRLPELTRSLGGAATLTVAFDQSEFIEKSIGDLTTEGLLGLGFAALIILVFL---F 347

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +   +  + ++ L +   L    + G   N+  + A+   +G  V+D +VV + ++   
Sbjct: 348 SFRSTVVTVVSIPLSLVVALIGLWVNGFTLNMLTLGALTIAVGRVVDDSIVVIENIK--- 404

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF-AIPMAFGI 805
           +      +    +     E  G    +++      LP+A  GG     F A  +   I
Sbjct: 405 RHLDHGEAKLHAVQAGTREVAGAVTASTLTTVAVFLPIAFTGGITGSLFSAFALTVTI 462



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 59/144 (40%), Gaps = 8/144 (5%)

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                V +  + + + + +   F+     L  + ++    T  LG   + G    L ++ 
Sbjct: 842 FNSLFVALGAAILIVYLIMVATFRSLVHPLMLLVSIPFAATGALGLLVVTGTPLGLPSLI 901

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            +L L+G  V + +V+ D +R+        +S R+ + +     +   V T++A   ++ 
Sbjct: 902 GMLMLVGIVVTNAIVLLDLVRQYRDG---GMSAREAVIEGGRHRVRPVVMTALATICALT 958

Query: 785 PMAVW----GGSVIGSFAIPMAFG 804
           PMA      GG +    A+ +  G
Sbjct: 959 PMATGLTGEGGFLSKPLAVVVIGG 982


>gi|187919900|ref|YP_001888931.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
 gi|187718338|gb|ACD19561.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
          Length = 1084

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 68/524 (12%), Positives = 149/524 (28%), Gaps = 44/524 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I  +G L  L     ++  D FP+                  +V   
Sbjct: 8   LRRPYTFVVLAVLIFIVGPLAIL-----RTPTDIFPNIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 D  +     Y   L S +              + + + F           +   
Sbjct: 52  NGFSAQDMASRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + D +     +       Q   Q+   
Sbjct: 112 NSASILRVLPPGTLPPNIITYNASTVPILQLGLSSDTLSEQ--QLYDLGNSQIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + DP  L+        +       N    G    +     + 
Sbjct: 170 QGASVPLPFGGKVRQIMVDIDPRALQAKGLAPLDVVNAVNAQNLILPGGTAKIGTKEYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     D+    +     +     ++    A  
Sbjct: 230 QMNGSTDTVAAL--------------------NDLPIKTVAGGVVYVRDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    I+    +   + AG                   
Sbjct: 270 TNIVRSDGKRAALLTIEKSGSTSTLTIIQQVKAMLPHIAAGLPSALHITALSDQSVFVKS 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   SI L V+ +L  LS LG T+ + ++
Sbjct: 330 AVVGVAREALIAAALTAVMILLFLGSWRATLIIAVSIPLAVLTSLIALSALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I       +++  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLENGEALQDAILNGSGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           F   G         A  +  +++ S F + ++V  + ++++R +
Sbjct: 450 FLLSGVARYLFVPLAEAVVFAMIASYFFSRTLVPTLAMYLMRAR 493



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 77/234 (32%), Gaps = 8/234 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR                  +      L  +   S +   +++ VK  +  I        
Sbjct: 256 VRDVAHVRDGYAPQTNIVRSDGKRAALLTIEKSGSTSTLTIIQQVKAMLPHIAAGLPSAL 315

Query: 654 TEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                   S  +           +I +A+  ++ +     W   L    ++ L +  +L 
Sbjct: 316 HITALSDQSVFVKSAVVGVAREALIAAALTAVMILLFLGSWRATLIIAVSIPLAVLTSLI 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             +  G   N+  +  +   +G  V+D  V  + +           + +D I     E  
Sbjct: 376 ALSALGQTINIMTLGGLALAVGILVDDATVAIENI---THHLENGEALQDAILNGSGEIA 432

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +  ++++  I  +PM +  G     F +P+A  +V A  +S F +  ++  +
Sbjct: 433 VPTFVSTLSICIVFVPMFLLSGVARYLF-VPLAEAVVFAMIASYFFSRTLVPTL 485



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/163 (14%), Positives = 59/163 (36%), Gaps = 7/163 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ +   + + + + F  W      I+ L   +          G   ++ A+   +  IG
Sbjct: 909  LVFAIGLVYLLMVVNFQSWLDPFITISGLPGSLAGIAWMLFSTGTRLSVPALTGTILCIG 968

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+   L+           ++        + T++A  I +LPMA+   
Sbjct: 969  IATANSILVVNTARE---LHHGGKPPLQAALEAGFSRFRPVLMTALAMLIGMLPMALGLG 1025

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             GG         +  G+ +   S++     +   ++ W  K  
Sbjct: 1026 DGGEQNAPLGRAVIGGLALGTVSTLLFVPVVYGMVHAWLDKRR 1068


>gi|194015819|ref|ZP_03054434.1| transporter, AcrB/AcrD/AcrF family [Bacillus pumilus ATCC 7061]
 gi|194012174|gb|EDW21741.1| transporter, AcrB/AcrD/AcrF family [Bacillus pumilus ATCC 7061]
          Length = 1069

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/721 (9%), Positives = 191/721 (26%), Gaps = 73/721 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + ++  ++   GL   L         +  P+                       
Sbjct: 9   LKNKFAVWLMTIIVTVAGLYAGL-----NMKQESIPNINTPVIT---------VSTTYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D V+  +    ++    L    +   +  +  + I + +  ++  +    ++   + 
Sbjct: 55  ATPDEVSDKVTDPIEKSIQNLNGVNVVTSNSFENASSIQVEYDYNKDMDEAKKEIEDAVN 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +N     + +K  +   +   + I+    + D         + ++    +  +   +  
Sbjct: 115 NIN--FPENAEKPKIARFSINAVPILALSVSGD--KESLENLTKKVEGDLVPSLEGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       +L++       +       + +    ++     + S    
Sbjct: 171 SSVEASGQQIKEVEFSFKQKKLKEYGLDEETVQNMIKGSDVNVPLGLYTFGNKQKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT-------------- 286
             +    ++  + +    +             +    GA +                   
Sbjct: 231 GNILSVKDLKNMRIPVTPSASSGAGAPSSGAENPGAQGAEQQAGNASQQQAAAQQQPSGS 290

Query: 287 --------------RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                          +     +    +    T    +  +   K   +   ++  A    
Sbjct: 291 AASGQSVELPTIKLSEIADIKVVKNAESISRTNGKDSIGLQIVKGSDANTVSVAEAVTKE 350

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
                                    S S       I A   +I++ + +   K  L++  
Sbjct: 351 LEKFKKDNKGIKVSTTYDQAEPIKESVSTMLNKAIIGAIFAIIIIMLFLRDIKSTLISVI 410

Query: 393 SIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---F 449
           SI L++++ + +L+ L  TL + ++  + + IG  VD +I+V E I              
Sbjct: 411 SIPLSLLIAVLILNQLDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMALKDEPLKGK 470

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISI 506
             +       +  I  S I  +   + L   GG        FA+T+  +++ S+  AI+I
Sbjct: 471 ELVKEATKEMFIPIMSSTIVTIAVFLPLALVGGMIGELFIPFALTIVFALMASLLVAITI 530

Query: 507 VRAMMIFIIRYK----KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC 562
           V  M   + +        K  +  P          +               ++       
Sbjct: 531 VPMMAHSLFKKNLYGTAKKVKEHKPSKLAGGYRRVLNWTLNHKWITSGIAILMLVGSLFL 590

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSV-----------------VRSNLESLQIGD 605
                      + +    +                             V +   SL   +
Sbjct: 591 APLVGVSFLPQEAEKTAMVTYTPEPGQTREQAIDETKKAEEYLIKRDHVNTVQYSLGSSN 650

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
               +  G  N  +       D+    +  + V K + +       ++ +      S  +
Sbjct: 651 ALTASVGGNSNGALFFVQYDEDTPNFDKEKDKVVKALQDKTSKGEWKSQDFSSAGASNTV 710

Query: 666 I 666
            
Sbjct: 711 T 711



 Score = 85.9 bits (210), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 94/262 (35%), Gaps = 8/262 (3%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +K    L            VR           +          +         +   + V
Sbjct: 806  YKSKKDLENKKITTPTGQEVRIGDVVKVRNGTTANTVTKRDGKIYAEVSGDMTTDDVSSV 865

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
             + V+KK+ ++   S +            E   +  + ++ +   + + + I F    A 
Sbjct: 866  TQDVQKKVDKLDLKSGVTIDTGGVSADIEESFTQLGLAMLAAIAIVYLVLVITFGGGLAP 925

Query: 695  GAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             AI  +L   I   L    L     +L A+  +L LIG  V + +V+ DR+   +     
Sbjct: 926  FAILFSLPFTIIGALVGLFLAKETISLNAMIGLLMLIGIVVTNAIVLIDRV---IHKEKE 982

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--GGSVI--GSFAIPMAFGIVVAA 809
             +S R+ + ++    +   + T++A   ++LP+A+   GGS I      + +  G+  + 
Sbjct: 983  GLSTREALLEAGTIRVRPILMTALATIGALLPLALGFEGGSQIVSKGLGVTVIGGLASST 1042

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
              ++ I   +   +  ++ K  
Sbjct: 1043 LLTLVIVPIVYEVLSKFKRKKK 1064



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 62/147 (42%), Gaps = 3/147 (2%)

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +         L ++ ++ L +   +       I  N+  + A+   IG  V+D +VV + 
Sbjct: 396 MLFLRDIKSTLISVISIPLSLLIAVLILNQLDITLNIMTLGAMTVAIGRVVDDSIVVIEN 455

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIP 800
           + + M L    +  ++L+ ++  E     + +++      LP+A+ G   G +   FA+ 
Sbjct: 456 IYRRMALKDEPLKGKELVKEATKEMFIPIMSSTIVTIAVFLPLALVGGMIGELFIPFALT 515

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWR 827
           + F ++ +   +I I   +   ++   
Sbjct: 516 IVFALMASLLVAITIVPMMAHSLFKKN 542


>gi|170702476|ref|ZP_02893358.1| acriflavin resistance protein [Burkholderia ambifaria IOP40-10]
 gi|170132607|gb|EDT01053.1| acriflavin resistance protein [Burkholderia ambifaria IOP40-10]
          Length = 1076

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/634 (11%), Positives = 163/634 (25%), Gaps = 44/634 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G L  L     +   D FP+                  +V   
Sbjct: 8   LRRPYTFVVLALLIFIAGPLAIL-----RMPTDIFPNIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMAKRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + + +     +           Q+   
Sbjct: 112 NSASILRILPPGTLPPNIITYNASTVPILQLGLSSNTLAEQ--QLYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + D   L+        +       N    G    +     + 
Sbjct: 170 QGAAVPLPFGGKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGTAKIGTREYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     ++    +     +     ++    A  
Sbjct: 230 QMNGSTQTVAAL--------------------NNLPVKTIDGNVVYVHDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S    I+    +   + AG                   
Sbjct: 270 TNIVRVDGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGLPKALHISALGDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   SI L V+ +L  L  LG T+ + ++
Sbjct: 330 AVQGVVREALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSLLALGALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     +   +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLERGAPLEDAILTGSGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G         A  +  +++ S F + ++V  + + ++R K          +R    
Sbjct: 450 FMLTGVARYLFVPLAEAVIFAMVASYFFSRTLVPTLAMVLMRAKGQGRPPRGVFARIARF 509

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +F   R     +                L            G      VD   +
Sbjct: 510 QAAFERRFEAVRLRYRALLSAAISNRRRFAAAFLLACAASTGLFAFAGQDFFPSVDTGEI 569

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           R +L +     I       ++         P + 
Sbjct: 570 RLHLRAPTGTRIEETARLTDEVEARIRTVIPANQ 603



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    ++ L +  +L      G   N+  +  +   +G
Sbjct: 338 ALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSLLALGALGQTINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +              D I     E    +  ++++  I  +PM +  G
Sbjct: 398 ILVDDATVAIENI---THHLERGAPLEDAILTGSGEIAVPTFVSTLSICIVFVPMFMLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  ++ A  +S F +  ++  +
Sbjct: 455 VARYLF-VPLAEAVIFAMVASYFFSRTLVPTL 485



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + I+   + + + + F  W   L  +  L   +        +     ++ A+   +  IG
Sbjct: 902  LAIAIALVYLLMVVNFQSWLDPLVIVGGLPASLAGIAWMLFVTRTTLSVPALTGTILCIG 961

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+   L  +  S      ++        V T++A  I +LPMA+   
Sbjct: 962  IATANSILVVNAARE---LIASGSSPWQAALEAGFSRFRPVVMTALAMLIGMLPMALGLG 1018

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             GG         +  G+     S++     +  FI+ W
Sbjct: 1019 DGGEQNAPLGRAVIGGLAFGTLSTLLFVPVLFGFIHAW 1056


>gi|15643623|ref|NP_228669.1| protein-export membrane protein SecD, putative [Thermotoga maritima
           MSB8]
 gi|170287874|ref|YP_001738112.1| protein-export membrane protein SecD [Thermotoga sp. RQ2]
 gi|4981394|gb|AAD35942.1|AE001752_9 protein-export membrane protein SecD, putative [Thermotoga maritima
           MSB8]
 gi|170175377|gb|ACB08429.1| protein-export membrane protein SecD [Thermotoga sp. RQ2]
          Length = 465

 Score =  129 bits (323), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 81/177 (45%), Gaps = 4/177 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           ++  V P + R++I   +   II  I +L+Y+ I ++    + A   LI +    LG  A
Sbjct: 281 SSGWVAPLLGRDVIDASLKAGIIGLILVLVYMIIYYR-TMGIVADLALIYNTVLLLGVMA 339

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                  L  +A ++  IG +V+  V++Y+R+++ M+L       +  I    + +L   
Sbjct: 340 AGKFILTLPGIAGIILTIGTTVDGNVIIYERIKEEMRL---GKPVKTSIAAGFDRSLSTI 396

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +  ++   ++ L +  +G   I  FAI +  G++ +   ++  +  +L  +  +   
Sbjct: 397 LDANITTILTGLILYYFGTGTIKGFAITLIIGVLGSIFVNLVFSRLLLDALARFIKP 453



 Score =  118 bits (294), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 115/488 (23%), Positives = 196/488 (40%), Gaps = 71/488 (14%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVN---GFLQMYSDELRSFLKKEGIGVFSM----RQI 94
           + I LGLD++GG+ +   V+           +      LR+ L   G    ++    R  
Sbjct: 32  SNIRLGLDIKGGARIEYMVEVQQGTENPSDVVDDVWTVLRNRLDAAGYTEAAVKKVLRDN 91

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
           +  I +    +         +        ++                     +    + +
Sbjct: 92  KYYIVVEIPGATDTVQAEKLIGSTGVLYFAQ---------------------VLDEYLGE 130

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
             S   E S+E  R+    +   +                       +++ +     +  
Sbjct: 131 DPSKVPELSLEARRENAVWLKGRDGKWY------------------LVKKEIMGRKDLV- 171

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
               P           R  R      + +                          VDI  
Sbjct: 172 -LEAPRIVYARPEVETRTGRYGYKVSFELAK----------------------EYVDIFK 208

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
               A    E T D   +   V+ D       V+       KA+I+GNF++E A  LAA+
Sbjct: 209 KITQALYVPEGTYDPKKRLAIVLDDVVQFVGQVVAIITDG-KAEITGNFSLEEAKQLAAI 267

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           LR+G+LP +L       V   LG D I     A + GL+L++++MI+ Y   G+VAD ++
Sbjct: 268 LRSGALPARLVKTSSGWVAPLLGRDVIDASLKAGIIGLILVLVYMIIYYRTMGIVADLAL 327

Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
             N +L L +++     LTLP IAGI+L IG  VD N+++ ERI+EE R  + V  S+  
Sbjct: 328 IYNTVLLLGVMAAGKFILTLPGIAGIILTIGTTVDGNVIIYERIKEEMRLGKPVKTSIAA 387

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GF R+ STI D+NIT ++  ++L++FG G ++GFAIT+ + +L S+F  +   R ++  +
Sbjct: 388 GFDRSLSTILDANITTILTGLILYYFGTGTIKGFAITLIIGVLGSIFVNLVFSRLLLDAL 447

Query: 515 IRYKKMKS 522
            R+ K   
Sbjct: 448 ARFIKPLR 455


>gi|331681991|ref|ZP_08382615.1| cation efflux system protein CusA [Escherichia coli H299]
 gi|331080670|gb|EGI51844.1| cation efflux system protein CusA [Escherichia coli H299]
          Length = 1047

 Score =  129 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETTTDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|269121890|ref|YP_003310067.1| acriflavin resistance protein [Sebaldella termitidis ATCC 33386]
 gi|268615768|gb|ACZ10136.1| acriflavin resistance protein [Sebaldella termitidis ATCC 33386]
          Length = 1006

 Score =  129 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/670 (10%), Positives = 196/670 (29%), Gaps = 47/670 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  ++  +GL+  +         +  P+      +         + +    
Sbjct: 8   LKRKVTTIVIIIVMFFLGLVSMM-----NMKQELLPNFDIPVVV---------ASVTWNG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V+  +    ++    +      + + +   + + + F      +    ++   + 
Sbjct: 54  ASPEDVDSQITRQVEDAVLNVDGIKKVMTNSQLGVSTVVVQFEYGEDTDIKQTQIQAEVD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  D    ++ T      ++VL  N        A+E +         ++   +  
Sbjct: 114 KIKKDLPSDSDSPIVGTYEIASGNLVLLVNFSGS---DAVEITTFASNMLEQRLKRIKGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                   +  ++  E DP +L     T  ++       N                    
Sbjct: 171 GAVDTLGGLTREIRVEVDPYKLEAFGLTPVELYSLIQSSNTIIPSGFVKEGGKEFLLRVL 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++                        V +I       +         +          
Sbjct: 231 GEIKTL--------------------DQVENILIRNNSGQTLKLKDVSKVSYTTKDRDTY 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L          S  +  +     +        L           +          S +
Sbjct: 271 SKLDGTDAVSIAISKTSDGNLVEISDKIKEQLKELEPYFPSGSKYEIIYDGSQNIKDSIA 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T      L +IVL + +   +  LV   ++ ++++ T  LL+  G +L L S+ G+
Sbjct: 331 NVRDTAVGALVLAVIVLLVFLKDIRATLVVALAVPISIVFTFFLLTTQGVSLNLVSLMGL 390

Query: 421 VLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            LG+G  VD++++V + I      + + +  +   G +     +  S  T++     +  
Sbjct: 391 SLGVGSLVDNSVVVLDNIFRHMTEEREPIDAAAINGTNEVGLALVASTATSVCVFFPILL 450

Query: 480 FGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G      +  ++++  +   S+  A+  V     F +  K++K               
Sbjct: 451 QQGAARMVFKDLSLSIMFAHSTSIVVALLFVPLASKFFLDAKRVKPEGKFFTRMKEGYYK 510

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG------VLANRPVD 590
            I           + + I+F +    L F   + +         +       +   +  +
Sbjct: 511 FIGKALDNKAVVIISVLIMFVLAIFGLRFVKMVFFPQVDNKEYAVVAELSSGLDLTKSYE 570

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           ++    N+ S +     +     +   +V ++ +     +  +V++ ++ ++ +I  +  
Sbjct: 571 VTKQIENVVSKEETTGVYSAVVDKGYAIVNVKIKDKTKESTFKVMDRIRDQLQDIPDIKL 630

Query: 651 IQNTEIVGPK 660
             +       
Sbjct: 631 NLSPNFSTST 640



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 89/248 (35%), Gaps = 9/248 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           +  + S VR    +           + +             +      LE+V++   +  
Sbjct: 753 KSSNGSFVRLRDFAHVEEVEGPSAIEKQDGLQQIKVGANIGTRGLNEALEIVQQAFKDEN 812

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
           P S  Q          +E+  +    +++S   M   +  + + +   L  + TL L + 
Sbjct: 813 PASGYQIGLSGDADSQQEMGGELAQSLLLSIFLMYFIMAAQLESFSLPLILLGTLPLSLI 872

Query: 706 -KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             TLG   +     ++  +  ++ L G  VN+ +V+ D +     L +  +  R  I  S
Sbjct: 873 GVTLGLL-ITNTPISMFVLVGLIMLAGMVVNNAIVLLDFI---GLLRSRGVELRQAIMDS 928

Query: 765 INETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
               L   + T++   +  +P+A+    G       +I + FG+  +   ++     +  
Sbjct: 929 GRSRLRPILMTTLTTVLGWVPLALGIGTGAGYYQGMSIAVIFGLSSSTLLTLVFIPVVYS 988

Query: 822 FIYDWRAK 829
            + + + K
Sbjct: 989 IVEERKLK 996



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/228 (14%), Positives = 75/228 (32%), Gaps = 16/228 (7%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI--- 670
           +    V +            + + +K+++ E+ P     +   +    S+ +        
Sbjct: 274 DGTDAVSIAISKTSDGNLVEISDKIKEQLKELEPYFPSGSKYEIIYDGSQNIKDSIANVR 333

Query: 671 -VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              V    +A+++ +         L     + + I  T       G+  NL ++  +   
Sbjct: 334 DTAVGALVLAVIVLLVFLKDIRATLVVALAVPISIVFTFFLLTTQGVSLNLVSLMGLSLG 393

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G  V++ VVV D +     +               NE     V ++  +     P+ + 
Sbjct: 394 VGSLVDNSVVVLDNIF--RHMTEEREPIDAAAINGTNEVGLALVASTATSVCVFFPILLQ 451

Query: 790 GGS---VIGSFAIPMAFG----IVVAASSSIFIAAPILLFIYDWRAKN 830
            G+   V    ++ + F     IVVA    +F+      F+   R K 
Sbjct: 452 QGAARMVFKDLSLSIMFAHSTSIVVAL---LFVPLASKFFLDAKRVKP 496


>gi|188581810|ref|YP_001925255.1| heavy metal efflux pump, CzcA family [Methylobacterium populi
           BJ001]
 gi|179345308|gb|ACB80720.1| heavy metal efflux pump, CzcA family [Methylobacterium populi
           BJ001]
          Length = 1054

 Score =  129 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/591 (12%), Positives = 169/591 (28%), Gaps = 42/591 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++I    +   GL            LD  P       I          +      
Sbjct: 11  RNLVLVLIGTVFVVAAGLYSV-----RTLPLDAIPDLSDVQTI---------VYTEYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + +  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLTVPRSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLSA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L       L    T        +     Q ++        ++R        +E   
Sbjct: 117 AGKRLPTGVTPTLGPDATGVGWVYQYAIVAKQQTLAELRSLQDWVVRF---GASRAEGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +  G    + Q     DP+RLR      +++       N    G    +         + 
Sbjct: 174 EVAGVGGFVKQYNVVVDPNRLRAQGIPLSRLREAIRSSNADVGGRTVELSEFEFMVRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +I                      +   E G              P        
Sbjct: 234 YLKSVADIE-------------------NIVLKTEAGTPLRVRDIARVELGPDERRGITE 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    IE A    A + A        +           +   
Sbjct: 275 LNGEGEVAGGIILQRFGANALNVIEGAKQRLAEVAASLPKGTEILPVYDRSQLIEAAIDT 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T    + +V +V  + +L+ +  LVA   + + +++ L  + LLG    + S+ GI 
Sbjct: 335 LKHTLVEESVIVALVCIVFLLHLRSALVAILMLPVGILMALGAMHLLGIGANIMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + +G  +D+ I++ E   +        +     L    +    ++F S +   ++ + +F
Sbjct: 395 IAVGAMIDAAIVMIENAHKHLERAPPGKPRVEILVEAAAEVGPSLFFSLLVITVSFLPIF 454

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   ++++V A+M+  +R + +             + 
Sbjct: 455 TLESQEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVLFVRGRIIPEHRNPLNRLLIWVY 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    +RA+   + +++     +I      G  +  D   G  + +   
Sbjct: 515 RPVIRVVLRAKVLTILLAVAALGLTIWPARQLGSEFMPDLNEGTLMYMPTT 565



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 66/159 (41%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            VI++ + ++  + +R     AL AI  L + I   LG   L GI  N+ ++  +   +G
Sbjct: 343 SVIVALVCIVFLLHLR----SALVAILMLPVGILMALGAMHLLGIGANIMSLGGIAIAVG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             ++  +V+ +   K+++         +++ ++  E      ++ +   +S LP+     
Sbjct: 399 AMIDAAIVMIENAHKHLERAPPGKPRVEILVEAAAEVGPSLFFSLLVITVSFLPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVLFVRGR 497



 Score = 45.1 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 77/260 (29%), Gaps = 14/260 (5%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V    P   +V    +  +Q+               V +            V E     
Sbjct: 775  EVQVPLPAGGTVPLGEVAKVQLTRGPTSIRTENGQLAVYIFVDLSGRDLGGYVAEARNAV 834

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTL 700
             TE+     +        +       +  + V ++ + + + +++ F+     L  + +L
Sbjct: 835  NTEVQLPQGMSIQWSGQFEYLERAEARLKIVVPVTLLVIFLLLYLNFRRLTETLIVMLSL 894

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV---VVYDRMRKNMKLY------ 751
               +   +      G   ++      + L G +    V   V  D      +        
Sbjct: 895  PFALVGGVWLMWWMGFNMSVAVAVGFIALAGVAAETGVIMLVYLDHAWDERRAAALAAGR 954

Query: 752  -TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
             +T       I     E +   + T +A    +LP+      G  ++   A+PM  G+V 
Sbjct: 955  ESTRADLYQAIMVGAVERVRPKMMTVVAIMAGLLPILWSSGAGSEIMQRIAVPMIGGMVS 1014

Query: 808  AASSSIFIAAPILLFIYDWR 827
            +   ++ +   I   +   R
Sbjct: 1015 STVLTLVVIPAIYGLVKGRR 1034


>gi|148974830|ref|ZP_01811810.1| putative silver efflux pump [Vibrionales bacterium SWAT-3]
 gi|145965339|gb|EDK30588.1| putative silver efflux pump [Vibrionales bacterium SWAT-3]
          Length = 1047

 Score =  129 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 75/670 (11%), Positives = 181/670 (27%), Gaps = 40/670 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N +LV++ ++    G L ++ N    + +D  P       I                  
Sbjct: 11  SNRFLVLVATVAIVFGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDHTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    K  L    T                     +           ++   +   +
Sbjct: 118 APNLPSSAKPTLGPDATGVGWVYSYV-LQDKTGKPDLSDLRSLQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  +            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYDLTLQQVNKAIQDGNQETGASVVEIAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   + G         D    P        +
Sbjct: 237 LASIEDI------------------QSIPLKVTDKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I++     A L+AG       +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIDSVKSKLAELQAGLPEGVEIVATYDRSTLIDCAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILGAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S I   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLIIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR   +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGNVLPEHKNPVNRSLVAMY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLL-FTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             +    ++     + I++     +                +G +         + +   
Sbjct: 519 KPLLNLSLKYPKVMIVIALGLMASAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R  L+       +    D     + R +     +        +  K   E     T ++ 
Sbjct: 579 RELLQQTNKLIKTIPEVDTTWGKIGRAETATDPAPLTMIETIIQLKPRDEWRDGVTTESL 638

Query: 655 EIVGPKISRE 664
                 + + 
Sbjct: 639 RQEFDDLIQF 648



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 79/287 (27%), Gaps = 20/287 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + LS V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALSDVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        + ++ +                 +    L    +V + I
Sbjct: 816  WVFVDIDGRDLGSYVAEAQQVVAEQIVLPAGYSLAWSGQYEYMERAKDRLRV--VVPITI 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYS 733
            + I +L+Y+  R         +  L L +    G          F++      + L G +
Sbjct: 874  AIIMLLLYLSFR---RVGEVMMIMLTLPLAMVGGLWLMHYLNYNFSIAVGVGFIALAGVA 930

Query: 734  VNDKVVVYDRMR----------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++   +           +  +         D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHYKKLDAEQNQQTIQQTDLTDAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +P+      G  V+   A PM  G+  A   ++ +   I        
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQRE 1037



 Score = 45.8 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 66/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++    ++   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVIDSVKSKLAELQAGLPEGVEIVATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDCAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILGAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLIIITLSFVPVFALEGQEGKMFS 469


>gi|114777273|ref|ZP_01452284.1| putative multidrag resistance protein [Mariprofundus ferrooxydans
           PV-1]
 gi|114552418|gb|EAU54901.1| putative multidrag resistance protein [Mariprofundus ferrooxydans
           PV-1]
          Length = 1027

 Score =  129 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/463 (12%), Positives = 140/463 (30%), Gaps = 25/463 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V GF+    +   +          +     + IT +   +        +++  +  V
Sbjct: 56  PDLVAGFITTPLENAIAQANGIDYMSSTSSTSSSVITANLKLNYDSNKALTEISAKVSSV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L  + ++ ++     + I+ +    +  Q+ S+    +  +IR    ++   +    
Sbjct: 116 LNQLPPESQRPVINVQIGQTIAAMYIGFSSSQLSSN--NITDYLIRVVQPKLQAVDGVQT 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L    D  +L     T A +       +                 GN   
Sbjct: 174 AELLGGKQFALRAWLDSKKLAAYGLTAADIRTALAQNDYLS------------GLGNSKG 221

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
              +V ++      +   F          +   +             +            
Sbjct: 222 QMVQVNLTASTSLHSVEEFRH--------MVIKQNNGAIVRLEDVAKVTLGSEDYDSQVA 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    I+    +   +++         +   +      S S  
Sbjct: 274 FDGNKAVYIGIKVAPTANLLDVIKGVRKVFPDIQSQLPQGIHGKIVYDSTKFVNSSISEV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T      ++ +V+F+ +   +  L+   +I L++I T +++ + G ++ L ++  +VL
Sbjct: 334 EHTLIEALIVITLVVFVFLGSPRSVLIPIIAIPLSLIGTFSMMLIFGFSVNLLTLLALVL 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E +     +      +           I    I  +   V + F G 
Sbjct: 394 AIGLVVDDAIIVVENVNRHLEEGLQPMQASIQAARELAGPIIAMTIVLISVYVPIGFQGG 453

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             G     FA T+  ++ +S   A+++   M   + +      
Sbjct: 454 LTGALFTEFAFTLVGAVTMSAVIALTLSPMMCSRLFKAHTKDR 496



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 94/290 (32%), Gaps = 14/290 (4%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            +    S+      +            D      L   +   V LS +           ++
Sbjct: 733  YVNYFSMAGRSYKVIPQVQQRDRLNTDQLMNYYLRTASGASVPLSTIAHITTETVPEALN 792

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                         +        A   +  +    + +   +     +     + S  ++ 
Sbjct: 793  HFQQLNATTVQGVMLPGVTTGDALAFLKHLADTTLPQGYSIDYAGQSRQFMQESSGFMVT 852

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF--GIEFNLTAVA 724
                    + I + + +  +F+ +   L  + ++ + I   L F +L   G   N+    
Sbjct: 853  FAF-----ALIIIFLALAAQFESFRDPLIILVSVPMSIAGALVFISLGVGGATINIYTQV 907

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++TL+G      +++ +      +L     S R+ I+ +    L   + T+ A  + V+
Sbjct: 908  GLVTLMGLISKHGILIVEFANSQQRL---GKSKREAIELAAAIRLRPILMTTAAMVLGVV 964

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+ V    G +   +  + ++ GI +    ++ +   + + I    +KN 
Sbjct: 965  PLLVASGAGAASRFNLGLVISSGIAIGTIFTLLVVPAVYMLIAADHSKNK 1014



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/251 (13%), Positives = 85/251 (33%), Gaps = 7/251 (2%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           + ++    + +       V L  V       +  D        +  ++        + + 
Sbjct: 235 HSVEEFRHMVIKQNNGAIVRLEDVAKVTLGSEDYDSQVAFDGNKAVYIGIKVAPTANLLD 294

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-K 689
             + +  V   I   +P            K     I +    +I + I + + +++    
Sbjct: 295 VIKGVRKVFPDIQSQLPQGIHGKIVYDSTKFVNSSISEVEHTLIEALIVITLVVFVFLGS 354

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  I  + L +  T     +FG   NL  + A++  IG  V+D ++V + +    +
Sbjct: 355 PRSVLIPIIAIPLSLIGTFSMMLIFGFSVNLLTLLALVLAIGLVVDDAIIVVENVN---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
                +       ++  E  G  +  ++      +P+   G   G++   FA  +   + 
Sbjct: 412 HLEEGLQPMQASIQAARELAGPIIAMTIVLISVYVPIGFQGGLTGALFTEFAFTLVGAVT 471

Query: 807 VAASSSIFIAA 817
           ++A  ++ ++ 
Sbjct: 472 MSAVIALTLSP 482


>gi|120597518|ref|YP_962092.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
 gi|120557611|gb|ABM23538.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
          Length = 1032

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 79/625 (12%), Positives = 177/625 (28%), Gaps = 45/625 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+  +  +L  M   +GL+        +  +  FP     +            +  +   
Sbjct: 9   RHPIFASVLSIMAVLLGLIA-----FHKLDIQYFPEHTTHSA---------SVNASIAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS-RFKE--NIADKVTLF 118
             DF++  +        S L K         + +  +T+ F D     E  N+ +K+   
Sbjct: 55  SADFMSSNVADKLVAAASGLDKVDTMSTDCSEGRCSLTIKFKDDTTDIEYTNLMNKLRSS 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++G+N        K  +   T    S       ++            I +Q + Q+   +
Sbjct: 115 VEGINDFPQSMIDKPTVTDDTSATDSASNIITFVNTGGMEKQAMYDYISQQLVPQLKQVQ 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +++ L    A +       N S        +    S 
Sbjct: 175 GVGAVWGPYGGSQKAVRVWLNPEQMKALNIKAADVVGTLGSYNASFTSGAIKGKSRDFSI 234

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                VE   ++  + +                       G         + +    ++ 
Sbjct: 235 NPLNQVETLEDVKDLVIKV-------------------SDGKIIRVSDVAEVVMGEESLS 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +             +  +            A ++          +          
Sbjct: 276 PSLLSIGGHSAMSLQILPLSNANPVTVASNIKAEIARMQKHLPQGLEMNLAYNQADFIEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +             LV +++ + +   +   +   +I + VI   A++S LG ++ + +I
Sbjct: 336 AIDEGFAALIEAVILVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMSALGFSINVLTI 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E         ++ F +   G       I    +T     + +
Sbjct: 396 LAIILAIGLVVDDAIVVVENCYRHIENGETPFNAAINGCQEIIFPIIAMTLTLAAVYLPI 455

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
               G      R F+ T+  +++IS   A+++   M  ++      + K    ++     
Sbjct: 456 GLMSGLTADLFRQFSFTLAAAVIISGMVALTLSPMMSAYLINTTEQQPKWFSRVEGALQQ 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L  + ++  F R R       +L  +  I       +   ++  G I +       V
Sbjct: 516 LNHLYINELSKWFTRKRQMLGMALVLMGLAGIAYWQLPKILLPVEDSGFIDVAANGPTGV 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614
                  +   L             
Sbjct: 576 GRQYHLDHNSELNGVIDGHPAVGAN 600



 Score = 81.7 bits (199), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 91/258 (35%), Gaps = 8/258 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMV 638
            + V   + + +S V   +   +    S  +  G     +++      + V     ++  
Sbjct: 250 VIKVSDGKIIRVSDVAEVVMGEESLSPSLLSIGGHSAMSLQILPLSNANPVTVASNIKAE 309

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAI 697
             ++ + +P     N            I +G   +I + I + LI +        A   I
Sbjct: 310 IARMQKHLPQGLEMNLAYNQADFIEAAIDEGFAALIEAVILVSLIVVLFLGSLRAASIPI 369

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ + +       +  G   N+  + A++  IG  V+D +VV +      +      + 
Sbjct: 370 ITIPVCVIGVFAVMSALGFSINVLTILAIILAIGLVVDDAIVVVENC---YRHIENGETP 426

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +       E +   +  ++      LP+ +  G    +   F+  +A  ++++   ++ 
Sbjct: 427 FNAAINGCQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVIISGMVALT 486

Query: 815 IAAPILLFIYDWRAKNAR 832
           ++  +  ++ +   +  +
Sbjct: 487 LSPMMSAYLINTTEQQPK 504



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 104/289 (35%), Gaps = 10/289 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       FT+ +   ++        V+    V     ++   S  +     
Sbjct: 730  TFLGSVKAADLHATDGFTYPIQVQVNLDKLSDFRVMDKLYVTSESGQALPLSQFVSINQT 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  K F+     +    +      + +K  + E +P             + +EL+  
Sbjct: 790  TAESNIKTFMGLDSAELTADIMPGYSTDEIKAYLDEQLPTLLTDAQGFKYNGVIKELMDS 849

Query: 669  --GIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              G   + +++ + + + +  +F+ +   L  + T+ L I   L    LFG   N+ +  
Sbjct: 850  QAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCIVGALLTLTLFGQSLNIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +      K      S  +    S    L   + TS+   +S +
Sbjct: 910  GLLTLVGLVTKHGILLVEFAN---KQQLQGFSAIESALSSAKSRLRPILMTSLTMILSAI 966

Query: 785  PMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+A+  G     + +  + +  G++     S+F+     + + + +A++
Sbjct: 967  PLALASGPGSLGLANIGLVLVGGLLAGTFFSLFVVPVAYVAMAELKARD 1015


>gi|108762817|ref|YP_629249.1| cation efflux system protein CusA [Myxococcus xanthus DK 1622]
 gi|108466697|gb|ABF91882.1| cation efflux system protein CusA [Myxococcus xanthus DK 1622]
          Length = 1066

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 82/684 (11%), Positives = 189/684 (27%), Gaps = 46/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN    ++L   +    +     + +  + LD  P       I                 
Sbjct: 21  RNPFLTILLVGGLAAWAV-----HAVRNTKLDAIPDLSDTQVI---------VFTEWMGR 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +            K            + I + F D         +V  +++ 
Sbjct: 67  GPDLVEDQITYPISSSLLSAPKVKAVRGQSMFGMSFIYVIFEDGTDMYWARSRVLEYMET 126

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L       L    T             +       +            +       
Sbjct: 127 ARGRLPAGVTPMLGPDATGVGWVFQY-ALVDESGKHSLADLRSLQDWNVRYALSSVPGVA 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      I+ Q   + DP++LR    T  +++      N    G +  +         + 
Sbjct: 186 EVASVGGIVKQYQVQVDPNQLRAYGVTLGEVTRAVRESNEDVGGRVMEIAGHEHIIRGRG 245

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                    + +     G              P        
Sbjct: 246 YIRSTQDIEN------------------IPLKVSADGTPVLVRNVATVSLGPDIRRGVAE 287

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    IE        +RAG       +V     G    S S 
Sbjct: 288 LDGKGEVAGGIVVMRYGENALTVIEAVKERLEEVRAGLPEGVELVVTYDRSGLIEESIST 347

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +++F+ +++ +  LV  F++ L V+L    +   G T  + S+ GI+
Sbjct: 348 LSRALVEEMLVVSLIIFLFLMHARSALVTIFTLPLAVLLAFIPMYYQGLTANIMSLGGII 407

Query: 422 LGIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + IG  VD++I++ E I ++        +       +         +IF + +   +A +
Sbjct: 408 VAIGAMVDASIIIVENIHKKLEAWEAEGRPGERREVIISAMQEVGPSIFGTLLVLTVAFL 467

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G   +  A T   S+  +   A+++  A+ +  IR +  +  +        
Sbjct: 468 PVFTLEATEGRLFKPLAYTKTYSMGFAAVLAVTLTPALAVLFIRGRIRREDENPLNRWLV 527

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSI-CLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            +   +    +R     V +S++    ++   +           +G I     +   + +
Sbjct: 528 ALYMPVVRFVVRHAKVVVALSVVAMAMTVPAFMRLGHEFMPPLNEGAILYMPTSPPGMSI 587

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +     L+S    D   +      +   +       +      +      +         
Sbjct: 588 TEATRILQS---MDAELKRIPEVVSVFGKAGRAETATDPAPLSMFETTVVLKPKSEWRKG 644

Query: 652 QNTEIVGPKISRELIRKGIVGVII 675
              E +  ++   L   G+  +  
Sbjct: 645 LTWEALLTEMDETLQYPGMPNIFW 668



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 78/208 (37%), Gaps = 9/208 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    LE V+  + E V L    +   +  +    L R  +  +++ ++ + +++    
Sbjct: 312 EAVKERLEEVRAGLPEGVELVVTYDRSGLIEESISTLSRALVEEMLVVSLIIFLFLMHAR 371

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR--- 745
               AL  I TL L +          G+  N+ ++  ++  IG  V+  +++ + +    
Sbjct: 372 S---ALVTIFTLPLAVLLAFIPMYYQGLTANIMSLGGIIVAIGAMVDASIIIVENIHKKL 428

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
           +  +        R++I  ++ E       T +   ++ LP+       G +    A    
Sbjct: 429 EAWEAEGRPGERREVIISAMQEVGPSIFGTLLVLTVAFLPVFTLEATEGRLFKPLAYTKT 488

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKN 830
           + +  AA  ++ +   + +     R + 
Sbjct: 489 YSMGFAAVLAVTLTPALAVLFIRGRIRR 516



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/247 (12%), Positives = 66/247 (26%), Gaps = 14/247 (5%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + V     +             E   LV   +          V +       E+   + +
Sbjct: 799  AQVPLAQVADVRFVQGPPMIRSEGGKLVTYVFVDTARPIADYVKDAKAAVAREVKTPTGV 858

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL---GAITTLILDITKTL 708
            +       K       K    V+I    +L+ + + F     +     +  +   +   +
Sbjct: 859  RVEWSGQFKYFERATEKLK--VVIPVTLLLVCLLLYFSTKSVVEMGIVLLAVPFSLIGAV 916

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY------DRMRKNMKLYTTSISFRDLID 762
                L     ++     ++ L G      VV+        +         +     + I 
Sbjct: 917  WLLYLLDYNMSIAVWVGLIALAGLDAETGVVMLLYLTLAHKKADQEGRLRSMADLTETIV 976

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
                  +   + T M   I +LP+      G  V+   A P+  G+V +    + +   I
Sbjct: 977  DGAARRIRPKLMTVMTDMIGLLPVLWSTGTGADVMKRIAAPLVGGLVTSFLLELTVYPAI 1036

Query: 820  LLFIYDW 826
                   
Sbjct: 1037 FALWKRR 1043


>gi|281177715|dbj|BAI54045.1| putative cation efflux system protein CusA [Escherichia coli SE15]
          Length = 1047

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 171/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A +       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLADVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWLHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|262382679|ref|ZP_06075816.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262295557|gb|EEY83488.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 1021

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/684 (10%), Positives = 192/684 (28%), Gaps = 51/684 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    +++ ++    +GL+           +   P                   + +++
Sbjct: 6   LKRPIAVLMAFTACFIVGLVT-----YFTIPVSLLPDIAIPE-------------ITVQI 47

Query: 61  DEDDFVNGFLQM-YSDELR---SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
              +     L+      +R     +          R     I LSF      +    +V 
Sbjct: 48  SGQNTSARELENTVVKPVRLQLMQVAGLRDIHSETRDGAGIIRLSFDFGTNTDLAFIEVN 107

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA--IEQSMEIIRQRIDQI 174
             +    + L  + ++  +V  +  +I +      +  + + A  ++           +I
Sbjct: 108 EKIDAAMNYLPREVERPRVVKASATDIPVFCLNLTLKTIENDAAFLDLCQFAETVIKRRI 167

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                      +  +  QL    D   L     T   +       N           +  
Sbjct: 168 EQLPEVAMVDITGILGRQLQIVPDMKLLDMADITLNDLESALSANNIEPGSMTVRDGYYE 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            +     L+    ++  I++                         R F       +    
Sbjct: 228 YNIKFSTLLRTPEDVQNIYI---------------------RKNDRIFQIKDLAKVAVVP 266

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                  +             +A  +    ++ A            P     +       
Sbjct: 267 EKETGLSLANGERAVTLAVIKQADEN-MDNMKEALAEVTDYFKSIYPDIEFTITRNQTEL 325

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + S  K   ++    + IV  + +   K   V   S+ +++I++     L   +L +
Sbjct: 326 LDYTISNLKQNLSLGFLFICIVAILFLGDVKSPAVIGLSMVVSIIISFLFFYLFNMSLNI 385

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            S++G++L +G+ +DS+I+V E I +   K  ++  +   G +   + +  S  T +   
Sbjct: 386 ISLSGLILALGMMIDSSIIVTENIAQYRAKGDNLEEACIKGTTEVITPMLSSTFTTIAVF 445

Query: 475 VVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V L F     G      A  + + +++S FT I ++  +   +    ++K    N     
Sbjct: 446 VPLVFMSGIAGAIFFDQAFAVTVGLMVSYFTGIMLLPVLYKLVYSVPEIKHSFFNLKINN 505

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            +    +   +     +         +     +    + + +  K  +   +  N  +  
Sbjct: 506 LIKEHTLDRFYDGGVDFIFRHKTTSLLFVAVTIPLCAILFYMIPKSRMP-EIDQNELIAH 564

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV-AQTRVLEMVKKKITEIVPLST 650
                N+   +      + F        +     G       R  E+   ++        
Sbjct: 565 VEWNENIHIDENRKRVTELFGEADQLGAQHTAYIGQQQFLLNRDRELSISEVELYFKTEE 624

Query: 651 IQNTEIVGPKISRELIRKGIVGVI 674
                 +  +IS  + R     V+
Sbjct: 625 TDAIAPLQQEISAWVKRNYPTAVL 648



 Score = 99.4 bits (245), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 92/254 (36%), Gaps = 8/254 (3%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
               +    +     + V  +  +        +     KN             A+  +  +
Sbjct: 769  NTLIRTQPDENQKTNHVPLSAVTKITPGEDLKVLTAGKNGEYIPFSFYQVENAEQLMENI 828

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
             +   +E    +            +++++ + +V + IS + M   +  +F+ +   L  
Sbjct: 829  RELVRSESKDKTNWDIDFSGSFFSNQQMLNELVVILFISILLMYFILAAQFESFLQPLIV 888

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +  + +D+  +L    + G   NL +   ++   G  +ND ++  D + +   L    + 
Sbjct: 889  LLEIPIDVAASLLVLWICGHTLNLMSAIGIVVTCGIIINDSILKLDAINE---LRKEGVP 945

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
              + I ++    L   + TS+     ++P+      G  +    +I M   +++  + S+
Sbjct: 946  LMEAIHEAGRRRLRPIIMTSLTTIFGMVPLLFTFDMGSELQKPLSIAMISAMLIGTAVSL 1005

Query: 814  FIAAPILLFIYDWR 827
            FI  P++ +    R
Sbjct: 1006 FII-PLVYWFIYRR 1018



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 85/254 (33%), Gaps = 7/254 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +    + +  N  +      + +  +   +      +GE+   + +  Q  +++   + 
Sbjct: 239 PEDVQNIYIRKNDRIFQIKDLAKVAVVPEKETGLSLANGERAVTLAVIKQADENMDNMKE 298

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY-IWIRFKWYFA 693
                    + +             ++    I      + +  + + I  I         
Sbjct: 299 ALAEVTDYFKSIYPDIEFTITRNQTELLDYTISNLKQNLSLGFLFICIVAILFLGDVKSP 358

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
                ++++ I  +  FF LF +  N+ +++ ++  +G  ++  ++V + +    +    
Sbjct: 359 AVIGLSMVVSIIISFLFFYLFNMSLNIISLSGLILALGMMIDSSIIVTENI---AQYRAK 415

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAAS 810
             +  +   K   E +   + ++       +P+    G     F   A  +  G++V+  
Sbjct: 416 GDNLEEACIKGTTEVITPMLSSTFTTIAVFVPLVFMSGIAGAIFFDQAFAVTVGLMVSYF 475

Query: 811 SSIFIAAPILLFIY 824
           + I +   +   +Y
Sbjct: 476 TGIMLLPVLYKLVY 489


>gi|20807644|ref|NP_622815.1| preprotein translocase subunit SecD [Thermoanaerobacter
           tengcongensis MB4]
 gi|20516188|gb|AAM24419.1| Preprotein translocase subunit SecD [Thermoanaerobacter
           tengcongensis MB4]
          Length = 410

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 116/384 (30%), Positives = 219/384 (57%), Gaps = 28/384 (7%)

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           + + +     V   AI +++ +IR R+D +G+++  I + GS+RI ++LPG +DP +  +
Sbjct: 51  VYVLEEAQGNVTQDAINKAIAVIRNRVDALGVTQPVIAQQGSNRIRVELPGMKDPDKAIE 110

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA++ F                             + KV ++G ++  + A +   
Sbjct: 111 IIGKTAQLKF--------------------------VGPDGKVILTGANVKDSKAVYAQT 144

Query: 265 T--HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
           +   +P V +  D  G ++F E T+  +G+P+A++LD +V++APV+   I +G A I+G 
Sbjct: 145 STGQQPQVTLVLDAEGTKKFAEATQKFLGQPIAILLDDKVISAPVVRDVITTGNAVITGL 204

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
              + A  LA ++RAGSLP+ L  +   +VGA LG  ++     A + G +L++LFM+  
Sbjct: 205 KDFQEASELATLIRAGSLPVTLKPIAYSSVGATLGPSALKASVEAGIYGTLLVMLFMMAF 264

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G +AD ++ + +++   + ++   TL LP IAG +L IG+AVD+NIL+ ER +EE 
Sbjct: 265 YRLPGFIADLALLIYILINFIIYAIFNVTLDLPGIAGFLLSIGMAVDTNILIFERFKEEL 324

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
              +++  +LD GF++A   + D+N+T +I  ++LF+ G G V+GFA+T+ + +  S+FT
Sbjct: 325 WAGKTIRPALDAGFAKAMRAVIDANVTTIIGAIILFYLGSGNVKGFALTLLIGVSSSLFT 384

Query: 503 AISIVRAMMIFIIRYKKMKSIDIN 526
           AI++ R ++  ++     +++   
Sbjct: 385 AITVTRFLLHALLEMDLTRNVKFY 408



 Score =  117 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 73/172 (42%), Gaps = 4/172 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VG  +    ++  +   I   + +++++   ++      A   L++ I      +A+
Sbjct: 231 YSSVGATLGPSALKASVEAGIYGTLLVMLFMMAFYRLP-GFIADLALLIYILINFIIYAI 289

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F +  +L  +A  L  IG +V+  +++++R ++ +       + R  +D    + +   +
Sbjct: 290 FNVTLDLPGIAGFLLSIGMAVDTNILIFERFKEELWA---GKTIRPALDAGFAKAMRAVI 346

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             ++   I  + +   G   +  FA+ +  G+  +  ++I +   +L  + +
Sbjct: 347 DANVTTIIGAIILFYLGSGNVKGFALTLLIGVSSSLFTAITVTRFLLHALLE 398



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 45/122 (36%), Gaps = 5/122 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR+  ++     ++    +       +        P    ++ I LGLDLRGG +++ E 
Sbjct: 1   MRSRGFIKFFSVILVSALVAYVAFFGIKAGNFSISP---IQDHIRLGLDLRGGVYVLEEA 57

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119
              +     +      +R+ +   G+    + +Q  N+I +     +  +   + +    
Sbjct: 58  QG-NVTQDAINKAIAVIRNRVDALGVTQPVIAQQGSNRIRVELPGMKDPDKAIEIIGKTA 116

Query: 120 QG 121
           Q 
Sbjct: 117 QL 118


>gi|241764357|ref|ZP_04762384.1| heavy metal efflux pump, CzcA family [Acidovorax delafieldii 2AN]
 gi|241366250|gb|EER60807.1| heavy metal efflux pump, CzcA family [Acidovorax delafieldii 2AN]
          Length = 1059

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/571 (12%), Positives = 163/571 (28%), Gaps = 45/571 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+  +++    +   G+   L     ++ LD  P       I          +      
Sbjct: 11  RNSFLVLLATLFVIVAGVFAVL-----RTPLDALPDLSDVQVI---------VYTEYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLSVPKSKVVRGFSFFGASFVYIIFEDDTDIYWARSRVLEYLNF 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +S++       +    T        +    D       E           Q+  +    
Sbjct: 117 ASSRMPKGVTPQIGPDATGVGWVYQYALIAKD---RTLAELRTLQDWYLRYQLTKAHGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +       DP +LR      AK+S      N    G +  +         + 
Sbjct: 174 EVASVGGFVQTYQITVDPVKLRAYGIPLAKVSQVVRDSNRDVGGRVVEMAETEYMVRGKG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I  + +               V+++ DE           +             
Sbjct: 234 YLRGAADIENLVVKTEKGTPVLIRDIARVELAPDERRGLTELNGEGE------------- 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +    I         + AG                   +   
Sbjct: 281 ------VVSGIAMARYGQNALEVIHNLKEKITEVSAGLPQGVSIQAVYDRSDLIHRAIDT 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T    + +V +V  + +++ +  LVA   + + V+++   + LLG    L S+ GI 
Sbjct: 335 LKRTLIEESLIVALVCMVFLMHIRSALVAILMLPVGVLISFIAMRLLGMNSNLMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + IG  VD+ I++ E   +          ++    ++          +F S +   ++ +
Sbjct: 395 IAIGAMVDAAIVMIENAHKHLERLPPEHNSKQRVEAMIAACKEVGPALFFSLLIITVSFL 454

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   S+  +   ++++V  +M+  IR + M            
Sbjct: 455 PVFTLESQEGRMFSPLAFTKTFSMAGAALLSVTLVPVLMMIFIRGRIMPESRNPVNRFLI 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICL 563
            +   I    MR +   + I+++    S   
Sbjct: 515 WVYRPIIAGVMRWKKVTIAIALVVLGVSFYP 545



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 18/166 (10%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + M+  + IR     AL AI  L + +  +     L G+  NL ++  +   IG
Sbjct: 343 SLIVALVCMVFLMHIR----SALVAILMLPVGVLISFIAMRLLGMNSNLMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFR-------DLIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+     +N   +   +          + +  +  E      ++ +   +S L
Sbjct: 399 AMVDAAIVMI----ENAHKHLERLPPEHNSKQRVEAMIAACKEVGPALFFSLLIITVSFL 454

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           P+          F   A    F +  AA  S+ +   +++     R
Sbjct: 455 PVFTLESQEGRMFSPLAFTKTFSMAGAALLSVTLVPVLMMIFIRGR 500



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 52/159 (32%), Gaps = 13/159 (8%)

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----- 741
              +    L  + ++   +   +      G   ++      + L G +    VV+      
Sbjct: 884  FRRLTETLIVMLSVPFALVGGVWLMWWLGYNLSVAVAVGFIALAGVAAETGVVMLIYLDH 943

Query: 742  --DRMRKNMKLYTTS---ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
              + +++  +            + +     E +   + T +A    +LP+      G  V
Sbjct: 944  AWEEIKEKRRSEGKEPGVGDLYEAVMDGAVERVRPKMMTVVAIMAGLLPIMWGTGTGSEV 1003

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +   A PM  G++ +   ++ +   +   +  +  +  R
Sbjct: 1004 MSRIAAPMVGGMISSTVLTLAVIPALYALVKQFELRRQR 1042


>gi|37523735|ref|NP_927112.1| protein-export membrane protein [Gloeobacter violaceus PCC 7421]
 gi|35214740|dbj|BAC92107.1| protein-export membrane protein [Gloeobacter violaceus PCC 7421]
          Length = 421

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 121/377 (32%), Positives = 213/377 (56%), Gaps = 28/377 (7%)

Query: 153 DQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKM 212
             +    ++    ++ QR++ +G+SE+ +Q  GS +IL+QLPG +DP++  +LLG TA++
Sbjct: 50  KTIDQEVMKGVAAVVEQRVNGLGVSEAVVQLKGSDQILVQLPGVKDPTQAERLLGDTAQL 109

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
            F K  PN   +                     K +++G  L  A        +   V +
Sbjct: 110 EFRKEAPNGEFE---------------------KTDLTGADLTNAFPQALQSGNGWEVAL 148

Query: 273 SFDEMGARRFFEVTRDNIGKPLA-------VVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            F   G  +F  +TR+  G             +    +    +++ I  GKA I+GNF+ 
Sbjct: 149 EFTGPGGEKFARITRELAGTGRRLGVFLDEKPISTPTVGVEFVDRGITGGKAVITGNFSA 208

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           + A  L   L+AG+LP+ + I+E R V A LG+DS+ +     +AG +L+ +FM+  Y  
Sbjct: 209 QEASELGIKLKAGALPVPVEIIENRTVSATLGADSVRQSLYTGIAGTLLVFIFMVAYYRL 268

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL+AD ++ +  + T A+  L+  TLTLP IAG +L IG+AVD+N+L+ ER +EE R  
Sbjct: 269 PGLIADMALIIYGLSTFAIFKLIPVTLTLPGIAGFILSIGMAVDANVLIFERTKEELRAG 328

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           + +F +++ GFSRA+++IFDS+ T+LI+  VLF+ G G V+GFA+T+ + +++++FT+++
Sbjct: 329 KQLFTAVEAGFSRAFTSIFDSHATSLISCAVLFWLGTGLVKGFALTLAIGLIVNLFTSVT 388

Query: 506 IVRAMMIFIIRYKKMKS 522
             R  ++ I+ +  ++ 
Sbjct: 389 CSRTFLLTILNFPALRK 405



 Score =  118 bits (294), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 88/234 (37%), Gaps = 4/234 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+   I   +      ++          G+  AQ      +K K   +     I     V
Sbjct: 176 LDEKPISTPTVGVEFVDRGITGGKAVITGNFSAQEASELGIKLKAGALPVPVEIIENRTV 235

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
              +  + +R+ +   I   + + I++   ++    L A   LI+    T   F L  + 
Sbjct: 236 SATLGADSVRQSLYTGIAGTLLVFIFMVAYYRLP-GLIADMALIIYGLSTFAIFKLIPVT 294

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  IG +V+  V++++R ++ ++           ++   +        +  
Sbjct: 295 LTLPGIAGFILSIGMAVDANVLIFERTKEELRA---GKQLFTAVEAGFSRAFTSIFDSHA 351

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + IS   +   G  ++  FA+ +A G++V   +S+  +   LL I ++ A   
Sbjct: 352 TSLISCAVLFWLGTGLVKGFALTLAIGLIVNLFTSVTCSRTFLLTILNFPALRK 405



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 38/129 (29%), Gaps = 5/129 (3%)

Query: 38  AMPKNRISLGLDLRGGSHLVLEVDEDD----FVNGFLQMYSDELRSFLKKEGIGVFSMR- 92
            +      LGLDL+GGS L L     D         ++  +  +   +   G+    ++ 
Sbjct: 21  IVATRPTVLGLDLQGGSQLTLLAKPTDKVKTIDQEVMKGVAAVVEQRVNGLGVSEAVVQL 80

Query: 93  QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI 152
           +  ++I +     +        +    Q    K   + +      T     +        
Sbjct: 81  KGSDQILVQLPGVKDPTQAERLLGDTAQLEFRKEAPNGEFEKTDLTGADLTNAFPQALQS 140

Query: 153 DQVISHAIE 161
                 A+E
Sbjct: 141 GNGWEVALE 149


>gi|319427703|gb|ADV55777.1| acriflavin resistance protein [Shewanella putrefaciens 200]
          Length = 1032

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 79/625 (12%), Positives = 177/625 (28%), Gaps = 45/625 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+  +  +L  M   +GL+        +  +  FP     +            +  +   
Sbjct: 9   RHPIFASVLSIMAVLLGLIA-----FHKLDIQYFPEHTTHSA---------SVNASIAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS-RFKE--NIADKVTLF 118
             DF++  +        S L K         + +  +T+ F D     E  N+ +K+   
Sbjct: 55  SADFMSSNVADKLVAAASGLDKVDTMSTDCSEGRCSLTIKFKDDTTDIEYTNLMNKLRSS 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++G+N        K  +   T    S       ++            I +Q + Q+   +
Sbjct: 115 VEGINDFPQSMIDKPTVTDDTSATDSASNIITFVNTGGMEKQAMYDYISQQIVPQLKQVQ 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +++ L    A +       N S        +    S 
Sbjct: 175 GVGAVWGPYGGSQKAVRVWLNPEQMKALNIKAADVVGTLGSYNASFTSGAIKGKSRDFSI 234

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                VE   ++  + +                       G         + +    ++ 
Sbjct: 235 NPLNQVETLEDVKDLVIKV-------------------SDGKIIRVSDVAEVVMGEESLS 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +             +  +            A ++          +          
Sbjct: 276 PSLLSIGGHSAMSLQILPLSNANPVTVASNIKTEIARMQKHLPQGLEMNLAYNQADFIEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +             LV +++ + +   +   +   +I + VI   A++S LG ++ + +I
Sbjct: 336 AIDEGFAALIEAVILVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMSALGFSINVLTI 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E         ++ F +   G       I    +T     + +
Sbjct: 396 LAIILAIGLVVDDAIVVVENCYRHIENGETPFNAAINGCQEIIFPIIAMTLTLAAVYLPI 455

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
               G      R F+ T+  +++IS   A+++   M  ++      + K    ++     
Sbjct: 456 GLMSGLTADLFRQFSFTLAAAVIISGMVALTLSPMMSAYLINTTEQQPKWFSRVEGALQQ 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L  + ++  F R R       +L  +  I       +   ++  G I +       V
Sbjct: 516 LNHLYINELSKWFTRKRQMLGMALVLMGLAGIAYWQLPKILLPVEDSGFIDVAANGPTGV 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614
                  +   L             
Sbjct: 576 GRQYHLDHNSELNGVIDGHPAVGAN 600



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 32/258 (12%), Positives = 91/258 (35%), Gaps = 8/258 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMV 638
            + V   + + +S V   +   +    S  +  G     +++      + V     ++  
Sbjct: 250 VIKVSDGKIIRVSDVAEVVMGEESLSPSLLSIGGHSAMSLQILPLSNANPVTVASNIKTE 309

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAI 697
             ++ + +P     N            I +G   +I + I + LI +        A   I
Sbjct: 310 IARMQKHLPQGLEMNLAYNQADFIEAAIDEGFAALIEAVILVSLIVVLFLGSLRAASIPI 369

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ + +       +  G   N+  + A++  IG  V+D +VV +      +      + 
Sbjct: 370 ITIPVCVIGVFAVMSALGFSINVLTILAIILAIGLVVDDAIVVVENC---YRHIENGETP 426

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +       E +   +  ++      LP+ +  G    +   F+  +A  ++++   ++ 
Sbjct: 427 FNAAINGCQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVIISGMVALT 486

Query: 815 IAAPILLFIYDWRAKNAR 832
           ++  +  ++ +   +  +
Sbjct: 487 LSPMMSAYLINTTEQQPK 504



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 105/289 (36%), Gaps = 10/289 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       FT+ +   ++        V+    V     ++   S  +     
Sbjct: 730  TFLGSVKAADLHATDGFTYPIQVQVNLDKLSDFRVMDKLYVTSESGQALPLSQFVSINQT 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  K F+     +    +      + +K  + E +P             + +EL+  
Sbjct: 790  TAESNIKTFMGLDSAELTADIMPGYSTDEIKAYLDEQLPTLLTDAQGFKYNGLIKELMDS 849

Query: 669  --GIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              G   + +++ + + + +  +F+ +   L  + T+ L I   L    LFG   N+ +  
Sbjct: 850  QAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCIVGALLTLTLFGQSLNIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +      K     +S  +    S    L   + TS+   +S +
Sbjct: 910  GLLTLVGLVTKHGILLVEFAN---KQQLQGLSAIEAALSSAKSRLRPILMTSLTMILSAI 966

Query: 785  PMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+A+  G     + +  + +  G++     S+F+     + + + +A++
Sbjct: 967  PLALASGPGSLGLANIGLVLVGGLLAGTFFSLFVVPVAYVAMAELKARD 1015


>gi|126175928|ref|YP_001052077.1| acriflavin resistance protein [Shewanella baltica OS155]
 gi|125999133|gb|ABN63208.1| acriflavin resistance protein [Shewanella baltica OS155]
          Length = 1025

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 79/625 (12%), Positives = 176/625 (28%), Gaps = 45/625 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+  +  +L  M   +GL+        +  +  FP     +            +  +   
Sbjct: 9   RHPIFASVLSIMAVLLGLIA-----FQKLDIQYFPEHTTHSA---------SVNASIAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR-FKE--NIADKVTLF 118
             DF++  +        S + K         + +  +T+ F D     E  N+ +K+   
Sbjct: 55  SADFMSSNVADKLIAAASGIDKVDTMSTDCSEGRCSLTIKFNDDTSDIEYTNLMNKLRSS 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           ++G+N        K  +   T    S       ++            I +Q + Q+   +
Sbjct: 115 VEGINDFPQSMIDKPTVTDDTSATDSASNIITFVNAGGMEKQAMYDYISQQLVPQLKQVQ 174

Query: 179 STIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +P +++ L    A +       N S        +    S 
Sbjct: 175 GVGAVWGPYGGSQKAVRVWLNPEQMKALNIKAADVVGTLGSYNASFTSGAIKGKSRDFSI 234

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                VE   ++  + +                       G         D +    ++ 
Sbjct: 235 NPLNQVETLEDVKDLVIKV-------------------SEGKIIRVADVADVVMGEESLS 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +             +  +            A ++          +          
Sbjct: 276 PSILSIGGHSAMSLQILPLSNANPVTVASNIKAEIARMQQHLPQGLEMTLAYNQADFIEA 335

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S             LV +++ + +   +   +   +I + VI   A++S LG ++ + +I
Sbjct: 336 SIDEGFSALIEAVILVSLIVVLFLGSLRAASIPIITIPVCVIGVFAVMSALGFSINVLTI 395

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             I+L IGL VD  I+V E         ++ F +   G       I    +T     + +
Sbjct: 396 LAIILAIGLVVDDAIVVVENCYRHIENGETPFNAAIKGCQEIIFPIIAMTLTLAAVYLPI 455

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLS 529
               G      R F+ T+  +++IS   A+++   M  ++      + K    ++     
Sbjct: 456 GLMSGLTADLFRQFSFTLAAAVMISGVVALTLSPMMSAYLINTTEQQPKWFSRVEHALQQ 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              +    +  +F R R       +L  +  I       +    +  G I +       V
Sbjct: 516 LNDMYIKELDKRFTRKRLMLGAAVVLIGLAGIAYWQLPKILLPAEDSGFIDVASNGPTGV 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGE 614
                 ++   L             
Sbjct: 576 GRQYHLNHNAELNGVMDEHPAVGAN 600



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 91/258 (35%), Gaps = 8/258 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL-QYQPGDSVAQTRVLEMV 638
            + V   + + ++ V   +   +    S  +  G     +++      + V     ++  
Sbjct: 250 VIKVSEGKIIRVADVADVVMGEESLSPSILSIGGHSAMSLQILPLSNANPVTVASNIKAE 309

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAI 697
             ++ + +P                  I +G   +I + I + LI +        A   I
Sbjct: 310 IARMQQHLPQGLEMTLAYNQADFIEASIDEGFSALIEAVILVSLIVVLFLGSLRAASIPI 369

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ + +       +  G   N+  + A++  IG  V+D +VV +      +      + 
Sbjct: 370 ITIPVCVIGVFAVMSALGFSINVLTILAIILAIGLVVDDAIVVVENC---YRHIENGETP 426

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +   K   E +   +  ++      LP+ +  G    +   F+  +A  ++++   ++ 
Sbjct: 427 FNAAIKGCQEIIFPIIAMTLTLAAVYLPIGLMSGLTADLFRQFSFTLAAAVMISGVVALT 486

Query: 815 IAAPILLFIYDWRAKNAR 832
           ++  +  ++ +   +  +
Sbjct: 487 LSPMMSAYLINTTEQQPK 504



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 10/289 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       FT+ +   ++        VL    V     ++   S  +     
Sbjct: 730  TFLGSVKAADLHATDGFTYPIQVQVNLDKLSDFKVLNKLYVTSESGQALPLSQFVSIKQT 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  K F+     +    V      + +K  + E +P             + ++L+  
Sbjct: 790  TAESNIKTFMGLDSAELTADVMPGYSTDEIKAYLDEQLPTLLNDAQGFKYNGVVKDLMDS 849

Query: 669  --GIVGV-IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
              G   + +++ + + + +  +F+ +   L  + T+ L I   L    LFG   N+ +  
Sbjct: 850  QAGTQSLFLLALVFIYLILAAQFESFVDPLIILLTVPLCIVGALLTLTLFGQSVNIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +      K     +S  +    S    L   + TS+   +S +
Sbjct: 910  GLLTLVGLVTKHGILLVEFAN---KQQYQGLSAIEAARSSAKSRLRPILMTSLTMILSAI 966

Query: 785  PMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+A+  G     + +  + +  G++     S+F+     + + + +AK+
Sbjct: 967  PLALASGPGSLGLANIGLVLVGGLLAGTFFSLFVVPVAYVAMAELKAKD 1015


>gi|260767996|ref|ZP_05876930.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio furnissii CIP
           102972]
 gi|260616026|gb|EEX41211.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio furnissii CIP
           102972]
          Length = 1047

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/643 (11%), Positives = 167/643 (25%), Gaps = 39/643 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N +LV++ ++    G L ++     Q+ +D  P       I                   
Sbjct: 12  NRFLVLVATIALIAGGLFSV----KQTPVDAIPDLSDVQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F D         +V  +L  V 
Sbjct: 59  QVVEDQVTYPLTTAMLAVPGAVTVRGYSFFGDSYVYIIFNDKTDMYWARSRVLEYLSQVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            KL  + K  L    T                     +           ++       + 
Sbjct: 119 PKLPANAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAQLRSLQDWFLKYELQTVAGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q   + DP++LR    T  +++      N      +  V            +
Sbjct: 178 ATVGGMVKQYQIQIDPAKLRAYNLTLQQVNAAIQNGNQETGASVIEVAEAEHMVRTTGYL 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +I                    + +     G         D    P        + 
Sbjct: 238 TGIEDI------------------QSLPLKVASKGTPLLLGDIADITLGPQMRRGISELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   +   +   + +  I         L+         +           +     
Sbjct: 280 GEGEAVGGVIVMRYGENASQVIANVKAKLDSLQGSLPSGVEIVPTYDRSTLINSAVENLW 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
              A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI + 
Sbjct: 340 KKLAEEFIVVAIVCALFLFHMRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG  VD  I++ E + +   +    +++ +  +          +F S I   ++ V +F 
Sbjct: 400 IGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGDAAQEVGPPLFFSLIIITLSFVPVFA 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  S   AI++V  +M + IR   +             +  
Sbjct: 460 LEGQEGKMFSPLAFTKTYAMAASAGLAITLVPVLMGYFIRGNILPEHKNPVNKALVSLYR 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +    +R     + +++     +       G  +      G  + +    P        
Sbjct: 520 PLLNLSLRYPKTVIAVAVALMASAYYPTSQLGSEFIPPLDEGDLMYMPTTYPGISIGKAR 579

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            L       I            +       D    T +  +++
Sbjct: 580 ELLQQTNKLIKTVPEVNTVWGKIGRAETATDPAPLTMIETVIQ 622



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 86/287 (29%), Gaps = 20/287 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADVRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  +         T         +    L     V V I
Sbjct: 816  WVFVDIDGRDLGSYVAEAQRVVADQLKLPAGYSLTWSGQYEYMERAKDRLS----VVVPI 871

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA--VLTLIGYS 733
            +   +++ ++  F+       I    L +    G + ++ ++++L+       + L G +
Sbjct: 872  TLTIIMLLLYFSFR-RVGEVLIIMATLPLAMVGGLWLMYSLDYHLSIAVGVGFIALAGVA 930

Query: 734  VNDKVVV---------YDRMR-KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++         Y +++ +  +   T     D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHYTKLKAQERQTNLTRQDLNDAIREGAGLRVRPVMMTVITVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +P+      G  V+   A PM  G+  A   ++ +   I        
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQRE 1037



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 11/239 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L       IS  N +GE    V +     ++      ++     +   +P         
Sbjct: 266 TLGPQMRRGISELNGEGEAVGGVIVMRYGENASQVIANVKAKLDSLQGSLPSGVEIVPTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLINSAVENLWKKLAEEFIVVAIVCALFLFHMRSSLVIALSLPVGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I  +  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGDAAQEVGP 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              ++ +   +S +P+    G     F+ P+AF    A ++S  +A  ++  +  +  +
Sbjct: 442 PLFFSLIIITLSFVPVFALEGQEGKMFS-PLAFTKTYAMAASAGLAITLVPVLMGYFIR 499


>gi|260778857|ref|ZP_05887749.1| AcrB/AcrD/AcrF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605021|gb|EEX31316.1| AcrB/AcrD/AcrF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 1022

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/667 (10%), Positives = 181/667 (27%), Gaps = 62/667 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++     +L   I  +G++        +  +  FP              R  +   +   
Sbjct: 9   KHPVLASVLSIAIVLLGIVS-----YQKLAIQYFPE-------------RQTASATVSAS 50

Query: 62  EDDFVNGFLQMYSDE----LRSFLKKEGIGVFSMRQIQNKITLSFADS---RFKENIADK 114
                  F+     E      + L K        ++    + + F D        ++ + 
Sbjct: 51  ITGASAEFMSQNVAEELITAVTGLDKIKTMTTDCQEGSCSLKIQFEDGVSEVEYASLMNN 110

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   + G++        K  +   +            +++      E    I +Q   Q 
Sbjct: 111 LRSKVDGISDFPPAMTDKPTVTDDSSDTAMPSNIITFVNRGEMKKQELFDFISQQIAPQF 170

Query: 175 GISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
                              +     P R+  L  + + +                     
Sbjct: 171 KNVLGVGGVWGPYGGSNRAIRVWLQPERMAALNVSASDVVGTLST--------------- 215

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                             +            + + V D+                ++   
Sbjct: 216 -----YNATFTAGTIKGEVRDFSINPVNQVTSIEDVRDLVIRVDNGNIVRVNDVADVQMG 270

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
              +    +     +  ++     +     T+      A              +      
Sbjct: 271 EESLEPSMLHVDGDMAMSLQVLPLKSENPVTVANRVKAAMETME-VPDNVEMKMVYNQAD 329

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +      T      LV  ++ + +   +   +   +I + VI    ++++LG ++ 
Sbjct: 330 FIEEAIDQGFMTLVEAIVLVSAIVVLFLGSLRVAAIPLITIPVCVIGVFGVMAMLGFSIN 389

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + +I  I+L IGL VD  I+V E       +  S F +           +    +T  + 
Sbjct: 390 VLTILAIILAIGLVVDDAIVVVENCYRHIEEGLSPFEAALKSCKEVVFPVIAMTLTLAVV 449

Query: 474 TVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDI 525
            + +    G      + FA T+  S++IS F A+++   M  ++        K  + ++ 
Sbjct: 450 YLPIGLMSGLTADLFQQFAFTLAASVIISGFVALTLSPMMSAYMLKSVTTSPKWFQWVET 509

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-- 583
              +        +   F R R    G ++L  +  + + F   +    +  G I++    
Sbjct: 510 KLNAMTDKYMVYLNAWFKRPRQVLAGTAVLTILSVVAVWFMPKVLLPTEDTGFIEVTSHG 569

Query: 584 -----LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
                      +   + +  E  +  + +    +      V L+     + +   ++  +
Sbjct: 570 PAGAGRLYDLDNADQINAVFEGNKEIEANLAYIETAPTNHVLLKPWEERNKSADEIINEM 629

Query: 639 KKKITEI 645
             K  E 
Sbjct: 630 IAKAKET 636



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 93/269 (34%), Gaps = 8/269 (2%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                  +     + +N     +    L +  +    + V       +    +       
Sbjct: 222 AGTIKGEVRDFSINPVNQVTSIEDVRDLVIRVDNGNIVRVNDVADVQMGEESLEPSMLHV 281

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV-PLSTIQNTEIVGPKISRELIRKGIVG 672
           + +  + LQ  P  S     V   VK  +  +  P +              E I +G + 
Sbjct: 282 DGDMAMSLQVLPLKSENPVTVANRVKAAMETMEVPDNVEMKMVYNQADFIEEAIDQGFMT 341

Query: 673 VIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++ + + +  I +        A   + T+ + +    G  A+ G   N+  + A++  IG
Sbjct: 342 LVEAIVLVSAIVVLFLGSLRVAAIPLITIPVCVIGVFGVMAMLGFSINVLTILAIILAIG 401

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV +      +     +S  +   KS  E +   +  ++   +  LP+ +  G
Sbjct: 402 LVVDDAIVVVENC---YRHIEEGLSPFEAALKSCKEVVFPVIAMTLTLAVVYLPIGLMSG 458

Query: 792 ---SVIGSFAIPMAFGIVVAASSSIFIAA 817
               +   FA  +A  ++++   ++ ++ 
Sbjct: 459 LTADLFQQFAFTLAASVIISGFVALTLSP 487



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 98/288 (34%), Gaps = 10/288 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       FT+ +   ++ +      VL    V     +    S  +     
Sbjct: 728  TFLGSVKAADLQADDGFTYPIQVQVNRQALGDFKVLDKLYVSSESGQRLPLSQFVSIKPV 787

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  K +  +   +    +      + V+  + E +P             + +EL   
Sbjct: 788  TAESNIKTYGGKDAAEITADLVPGYSADDVQAFLDEKLPELLKAGQSYEYDGVIKELNES 847

Query: 669  GIVG---VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                     ++ I + + +  +F+ +   L  + T+ L +   +   ++FG   NL +  
Sbjct: 848  SAGMQMLFGLALIFIFLILAAQFESFVDPLVILITVPLCLVGAILTLSVFGQSLNLYSKI 907

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +    N+K     +   +    S    L   + TS+   I  L
Sbjct: 908  GLLTLVGLVTKHGILMVE--FANLKRKE-GVEVMEAALMSARSRLRPILMTSLTMIIGSL 964

Query: 785  PMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            P+A+  G   +   +  + +  G+ +    S+F      + +   R K
Sbjct: 965  PLALAEGPGSLGRVNIGLVLVGGLTIGTFFSLFFVPMAYVAVAKLREK 1012


>gi|170720160|ref|YP_001747848.1| multidrug efflux protein [Pseudomonas putida W619]
 gi|169758163|gb|ACA71479.1| acriflavin resistance protein [Pseudomonas putida W619]
          Length = 1014

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/471 (11%), Positives = 137/471 (29%), Gaps = 29/471 (6%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           +         +  +  +         RQ  + I++        + +
Sbjct: 45  ITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRL 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++      V ++L  D +  +L        +++       ++ +   + +  + R   
Sbjct: 105 FTELLAKANEVRNQLPQDAEDPVLSKEAADASALMYISFYSKEMSN--PQITDYLSRVIQ 162

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++       +       +  +    DP +L         ++      N           
Sbjct: 163 PKLATLPGMAEAEILGNQVFAMRIWIDPVKLAAFGLAATDVTSAVRRYNFLAAAGEVKGE 222

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           ++  S      ++                      +    +     G  R        + 
Sbjct: 223 YVVTSINANTELKSA--------------------EAFAALPLKTSGDSRVLLGDVARVE 262

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                                       +    I+    +   L +         +    
Sbjct: 263 MGAENYDTVSSFDGTPSVYIGIKATPAANPLEVIKEVRRIMPELESQLPSALKGSIAYDA 322

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      +V++V+F+ +   +  L+   +I L++I  L  + ++G +
Sbjct: 323 TLFIQASIDEVVKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYS 382

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L L ++  +VL IGL VD  I+V E I     + +S   +   G       +    IT  
Sbjct: 383 LNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSPLDAALEGAREIAMPVVSMTITLA 442

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
                + F     G   + FA+T+  +++IS   A+++   M   ++R + 
Sbjct: 443 AVYAPIGFLTGLTGALFKEFALTLAGAVIISGVVALTLSPMMCALLLRREH 493



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 7/145 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  + T+ L +   L F  + G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 LRSVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 S  D   +   E     V  ++       P+       G++   FA+ +A  ++
Sbjct: 412 HMEEGKSPLDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVI 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
           ++   ++   +P++  +   R  NA
Sbjct: 472 ISGVVAL-TLSPMMCALLLRREHNA 495



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 60/157 (38%), Gaps = 6/157 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALLPLFLGVSSMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N       +S RD I+++    L   + T+ A    ++P+ +    
Sbjct: 911  ISKHGILIVE--FANQLREEKGLSARDAIEEAAAIRLRPVLMTTAAMVFGMVPLILATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G          +A G+ +    ++F+   I   +   
Sbjct: 969  GAVSRFDIGTVIATGMSIGTLFTLFVLPCIYTLLAHK 1005


>gi|26987642|ref|NP_743067.1| multidrug efflux protein [Pseudomonas putida KT2440]
 gi|24982323|gb|AAN66531.1|AE016281_12 multidrug efflux RND transporter, putative [Pseudomonas putida
           KT2440]
          Length = 1014

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/474 (12%), Positives = 141/474 (29%), Gaps = 29/474 (6%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           +         +  +  +         RQ  + I++        + +
Sbjct: 45  ITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRL 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++      V +KL  D +  +L        +++       ++ +   + +  + R   
Sbjct: 105 FTELLAKANEVRNKLPQDSEDPVLSKEAADASALMYVSFYSKEMSN--PQITDYLSRVIQ 162

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++       +       +  +    DP +L     +   ++      N           
Sbjct: 163 PKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGE 222

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           ++  S      ++                      +    +     G  R        + 
Sbjct: 223 YVVTSVNASTELKSA--------------------EAFAALPLKTSGDSRVLLGDVARVE 262

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                                       +    I+    +   L +         +    
Sbjct: 263 MGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEVRRIMPELESQLPSALNVSIAYDA 322

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      +V++V+F+ +   +  L+   +I L++I  L  + ++G +
Sbjct: 323 TRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYS 382

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L L ++  +VL IGL VD  I+V E I     + +S F +   G       +    IT  
Sbjct: 383 LNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSPFDAALEGAREIAMPVVSMTITLA 442

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
                + F     G   + FA+T+  +++IS   A+++   M   ++R ++  S
Sbjct: 443 AVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTLSPMMCALLLRREQNPS 496



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/144 (18%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  + T+ L +   L F  + G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 LRSVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 S  D   +   E     V  ++       P+       G++   FA+ +A  ++
Sbjct: 412 HMEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVI 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++   ++   +P++  +   R +N
Sbjct: 472 ISGIVAL-TLSPMMCALLLRREQN 494



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 63/162 (38%), Gaps = 6/162 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALLPLFLGVSSMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGG 791
                 +++ +    N       +S R+ I+++    L   + T+ A    ++P+    G 
Sbjct: 911  ISKHGILIVE--FANQLRDERGLSVREAIEEAAAIRLRPVLMTTAAMVFGMVPLILASGA 968

Query: 792  SVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +  F I M    G+ +    ++F+   I   +    +  A
Sbjct: 969  GAVSRFDIGMVIATGMSIGTLFTLFVLPCIYTLLAHKASAKA 1010


>gi|86141485|ref|ZP_01060031.1| putative transport related membrane protein [Leeuwenhoekiella
           blandensis MED217]
 gi|85832044|gb|EAQ50499.1| putative transport related membrane protein [Leeuwenhoekiella
           blandensis MED217]
          Length = 1053

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 73/611 (11%), Positives = 164/611 (26%), Gaps = 36/611 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  ++  + LL      + +  +D FP       I + +   G S          +++GF
Sbjct: 12  IAIIVTVLALLYFSVLAIQKIKVDIFPEVEAP-AIYIAMPYGGLS--------PAYMDGF 62

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +     ++  F+       F   Q    + LSF           +V   +    + L   
Sbjct: 63  MSNEFQKVLVFVGGIKNMEFKSVQGLTLMKLSFYPGTDMAQAQAEVATQVSRAMAFLPPG 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
                +V        +       D       E     I +                    
Sbjct: 123 AVPPQVVRFDAGAQPVGQLVFESD--QRSTGELQNLAITRIRPSFVNIPGISAPAPFGGN 180

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           +  +     P  ++    T  K+       N         +           L     + 
Sbjct: 181 VRTMVINVKPEEMQAYGLTADKILEAVGKNNFPSPAGNVQIGNTNYMAPVNTLELGAEDF 240

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
               +                            F      +           +       
Sbjct: 241 MNTPIKT--------------------GSGPTVFVRDVATVTDGADKTTAYALANGKRTV 280

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 KA  S    I        ML                      + S       + 
Sbjct: 281 YLPIIKKADASTLAAINNLKDAMPMLSDALPEDVSIKFVFDQSTYIENALSNLLHEGILG 340

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L  +++ + +   +  L+   +I + V+  + +L LLG T+ + +++G+ L IG+ VD
Sbjct: 341 AVLTGLMVLLFLGDKRGALIVVLTIPIAVLTAIIMLYLLGQTINIMTLSGLALSIGILVD 400

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLFFFGGGAVR 486
              +  E I +     ++   ++             I    +  LI + ++         
Sbjct: 401 EATVTIENIHQHFEMEKTKQRAILDALLEISIPKLLILLCILAVLIPSFMMVGIPRDMFM 460

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
             +I +G +++ S   + + +  +  +I++    K  D             +     + R
Sbjct: 461 PLSIAVGSAMIASFLASQTFIPVVANWIMKKHPQKHSDTKKSRFDRFKGRYLKFIQQKER 520

Query: 547 F--WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
           +        +L  I    +LF       +   G   L +    PV  ++ ++    L + 
Sbjct: 521 YKKPIFFGYLLVVIALSGVLFVSIGTDILPPSGSKDLQLRIKAPVGSALDQTEDYVLAVE 580

Query: 605 DISFQNFDGEK 615
           +   +    +K
Sbjct: 581 NHIREQIAPDK 591



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 97/288 (33%), Gaps = 6/288 (2%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
              V  ++     S  +                 L  L  +P  +S V  ++  L +    
Sbjct: 749  RFVSKNVWVDPNSGLVFQVQVQLPENQVNSLNDLQNLPLKPGAMSPVLDDVADLSLATEP 808

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
             Q      N  V +      S   +   ++ K       P             +  E + 
Sbjct: 809  GQVNRKGPNRFVTVTANTNHSDLGSASRKVRKILSELDAPPRGYSVRMAGEVNVLSETLS 868

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK-TLGFFALFGIEFNLTAVAAV 726
                G++++ + + + +   ++ +     I  +I  +   +L   +L G   NL +   +
Sbjct: 869  GLQSGLLVAIVVIFLMLTAYYQSFKTSLVILGIIPAVVAGSLLSLSLLGSTLNLQSYMGM 928

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +  +G SV++ V++ +  +  +       +  +    ++       + T++A    ++PM
Sbjct: 929  IMAVGVSVSNAVLIIN--QSELFRKEKLENAAESSLLAVASRFRPILMTALAMIAGMIPM 986

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A+    GGS +      +  G+V +  +S+ +   I    Y       
Sbjct: 987  ALGLGDGGSQVAPLGQAVIGGLVFSTFTSLLVLPFIYTIAYANTQPKK 1034



 Score = 50.8 bits (119), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 31/277 (11%), Positives = 88/277 (31%), Gaps = 5/277 (1%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +  +   + L  G +      +   +   V +  V +  +                 
Sbjct: 221 IGNTNYMAPVNTLELGAEDFMNTPIKTGSGPTVFVRDVATVTDGADKTTAYALANGKRTV 280

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVII 675
           +L  ++     ++A    L+     +++ +P                  +   +  G++ 
Sbjct: 281 YLPIIKKADASTLAAINNLKDAMPMLSDALPEDVSIKFVFDQSTYIENALSNLLHEGILG 340

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           + +  L+ +        AL  + T+ + +   +    L G   N+  ++ +   IG  V+
Sbjct: 341 AVLTGLMVLLFLGDKRGALIVVLTIPIAVLTAIIMLYLLGQTINIMTLSGLALSIGILVD 400

Query: 736 DKVVVYDRMRK--NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +  V  + + +   M+          L++ SI + L   +   +A  I    M      +
Sbjct: 401 EATVTIENIHQHFEMEKTKQRAILDALLEISIPKLL--ILLCILAVLIPSFMMVGIPRDM 458

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               +I +   ++ +  +S      +  +I     + 
Sbjct: 459 FMPLSIAVGSAMIASFLASQTFIPVVANWIMKKHPQK 495


>gi|238750891|ref|ZP_04612388.1| Heavy metal efflux pump, CzcA family [Yersinia rohdei ATCC 43380]
 gi|238710805|gb|EEQ03026.1| Heavy metal efflux pump, CzcA family [Yersinia rohdei ATCC 43380]
          Length = 1027

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 63/543 (11%), Positives = 136/543 (25%), Gaps = 52/543 (9%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             M+   G+       L Q+ LD  P       I           +         V   +
Sbjct: 5   AVMMAAWGIWS-----LQQTPLDALPDLSDTQVI---------IRVSYPGKAPQVVEDQV 50

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
                     +                + + F D         +V  +L  V S L  + 
Sbjct: 51  TYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFDDGTDPYWARSRVLEYLSQVQSTLPAEA 110

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           K +L    T                     +           ++    +  +      ++
Sbjct: 111 KASLGPDATGVGWIYEY-ALIDKTGKQSLADLRALQDWTLKFELKTVPNVSEVASVGGMV 169

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            Q     DP R+R L  +  +++      N    G +  +            ++   +  
Sbjct: 170 RQYQVVLDPERMRALNLSHQQIASAITDSNQEGGGSVLEMGAAEYMVRASGYLKTPED-- 227

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                                +     G              P        +     +  
Sbjct: 228 -----------------FRNIVITARDGIPILLSDVATVRMGPEMRRGVAELNGEGEVAG 270

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            I   +   +   TI         ++         +           +            
Sbjct: 271 GIIVMRYGKNALETINAVKEKLQQIQQNLPAGVEIVPVYDRSQLITQAIDSLSFKLLEEF 330

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            +V I+  + + + +  LVA  ++ L ++    ++   G    + S+ GI + IG  VD+
Sbjct: 331 LVVAIICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAIGAMVDA 390

Query: 431 NILVNERIRE----------------ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            I++ E + +                ++  + S   +++     A          + I  
Sbjct: 391 AIVMIENMHKVLEQWRRDNPGQVPASKDYWHISEQAAIE--VGPALFCSLLIITLSFIPV 448

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
             L    G      A T   ++ +S   AI++V  +M + IR K               +
Sbjct: 449 FTLQAQEGRMFSPLAFTKTYAMAVSAGLAITLVPVLMGYFIRGKIPDENANPINRWLIAL 508

Query: 535 PDC 537
              
Sbjct: 509 YHP 511



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 91/258 (35%), Gaps = 16/258 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   +   V LS +     +     +  +N        V L+ +   S        + +
Sbjct: 771  PVVTASGGQVALSELADIKVAEGPPMLKSENARLSDWVYVDLRGRDLKSAVTEMQQAVAQ 830

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +         +         + + +L  K ++ V ++ I +L+Y+        A  A+  
Sbjct: 831  QIKLPEGISLSWSGQFEYLERATAKL--KIVLPVTLAIIFVLLYVTFS-SVRDA--ALIM 885

Query: 700  LILDITKTLGFFALFGIEFNLTAVAA--VLTLIGYSVNDKVVVYDRMRKNMKLYT----- 752
              L      G + L+G+ +N +  AA   + L G +    V++   + + +K +      
Sbjct: 886  TTLPFALIGGVWLLYGLGYNFSVAAAVGFIALAGVAAEFGVIMVLYLNQAVKKHQQPGIT 945

Query: 753  -TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVA 808
             ++   R  I +     +     T       +LP+   GG    V+   A PM  G+V A
Sbjct: 946  MSASEMRTAIHEGAVLRVRPKAMTVATIMAGLLPIMWGGGAGSEVMQRIAAPMIGGMVSA 1005

Query: 809  ASSSIFIAAPILLFIYDW 826
               S+ +   + + ++  
Sbjct: 1006 PLLSMLVIPAVYMLLHKK 1023



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 9/228 (3%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 ++ ++Y          V E +++    +     I         I++ +      
Sbjct: 266 GEVAGGIIVMRYGKNALETINAVKEKLQQIQQNLPAGVEIVPVYDRSQLITQAIDSLSFK 325

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    +  +I     F +  AL AI TL L I          G+  N+ ++  +   IG
Sbjct: 326 LLEEFLVVAIICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAIG 385

Query: 732 YSVNDKVVVYDRM--------RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             V+  +V+ + M        R N      S  +  + +++  E       + +   +S 
Sbjct: 386 AMVDAAIVMIENMHKVLEQWRRDNPGQVPASKDYWHISEQAAIEVGPALFCSLLIITLSF 445

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +P+          F+ P+AF    A + S  +A  ++  +  +  +  
Sbjct: 446 IPVFTLQAQEGRMFS-PLAFTKTYAMAVSAGLAITLVPVLMGYFIRGK 492


>gi|324116648|gb|EGC10563.1| CzcA family protein heavy metal efflux pump protein [Escherichia
           coli E1167]
          Length = 1047

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------YIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|302878581|ref|YP_003847145.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
 gi|302581370|gb|ADL55381.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
          Length = 1034

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/569 (12%), Positives = 159/569 (27%), Gaps = 41/569 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV+L ++   +  + A+     ++ LD  P       I          +       
Sbjct: 11  RNRFLVLLATLFIVLAGIYAMF----KTPLDALPDLSDVQVI---------VYTEYSGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          + K  +         + + + F D         +V   L  +
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPKSRVVRGFSFFGASFVYVIFEDGTDIYWARSRVLESLGSI 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++       L    T        +  + +    +  +           Q+  +    +
Sbjct: 118 AGRMPAGVSPQLGPDATGVGWVYQYAVLSEN---HNLAQLRTMQDWYLRYQLTKAHGVSE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + Q     DP +LR        +S      N    G +  +         +  
Sbjct: 175 VASIGGFVQQYQVSVDPVKLRAYGIALKTVSQVIRDSNRDVGGRVVEMGETEYMVRGRGY 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  K +I                      +   + G              P        +
Sbjct: 235 LRGKTDIE-------------------TLVVKADRGTPVLLRDIARVDLGPDERRGLTEL 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    IE        + AG                   +    
Sbjct: 276 DGEGEVVAGIAMARFGENALEVIENIKHKLTDVSAGLPEGVTIRAVYDRSELIKRAIDTL 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T      +V +V  + +L+ +  LVA   +   V++    +  LG    + S+ GI +
Sbjct: 336 KHTLFEEGVIVALVCMVFLLHVRSALVAILMLPAGVLIAFIAMHALGMNSNIMSLGGIAI 395

Query: 423 GIGLAVDSNILVNERIREENRK---NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            IG  VD+ I++ E   +   +    +S   ++         ++F S +   ++ + +F 
Sbjct: 396 AIGAMVDAAIVMIENAHKHIERLGEGESRSDAIIAACREVGPSLFFSLLIITVSFLPVFT 455

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   S+  +   ++++V  +M+  IR                 +  
Sbjct: 456 LESQEGRLFSPLAYTKTFSMAGAALLSVTLVPVLMLLFIRGPIRPEQKNPLNRWMISLYR 515

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLF 565
            +    +  +   V I++L  + SI    
Sbjct: 516 PLIAAALSRKKTTVAIALLVLLISIYPAM 544



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 61/161 (37%), Gaps = 7/161 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           VI++ + M+  + +R     AL AI  L   +          G+  N+ ++  +   IG 
Sbjct: 344 VIVALVCMVFLLHVR----SALVAILMLPAGVLIAFIAMHALGMNSNIMSLGGIAIAIGA 399

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+  +V+ +   K+++      S  D I  +  E      ++ +   +S LP+      
Sbjct: 400 MVDAAIVMIENAHKHIERLGEGESRSDAIIAACREVGPSLFFSLLIITVSFLPVFTLESQ 459

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F   A    F +  AA  S+ +   ++L       + 
Sbjct: 460 EGRLFSPLAYTKTFSMAGAALLSVTLVPVLMLLFIRGPIRP 500


>gi|220914841|ref|YP_002490149.1| heavy metal efflux pump, CzcA family [Methylobacterium nodulans ORS
           2060]
 gi|219952592|gb|ACL62982.1| heavy metal efflux pump, CzcA family [Methylobacterium nodulans ORS
           2060]
          Length = 1057

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/585 (12%), Positives = 168/585 (28%), Gaps = 38/585 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           ++L  +     +   L + L    LD  P       I          +          V 
Sbjct: 13  LVLVLIGTVFAVAAGL-HALRTLPLDAIPDLSDVQTI---------VYTEYPGQAPQVVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +          + K  +         + + + F D         +V  +L    S+L 
Sbjct: 63  DQVTYPLTTAMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLSTAASRLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 L    T        +     + ++        ++R        +E   +     
Sbjct: 123 AGVTPGLGPDATGVGWVYQYAILAKQKTLAELRSLQDWVVRF---GASRAEGVAEVASVG 179

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + Q     DP+RLR L     K+       N    G    +         +  ++   
Sbjct: 180 GFVKQYNVVVDPNRLRALGLPLTKLREAIRASNTDVGGRTVELSEFEFMVRGRGYLKSPA 239

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           ++                      +   E G              P        +     
Sbjct: 240 DLE-------------------NIVLKTEGGTPLRLRDVARVELGPDERRGLTELNGDGE 280

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I   +   +    IE+A    A +          +           +    K T  
Sbjct: 281 VAGGIILQRFGANALTVIESAKQRLAEIAHSLPAGTEIVPVYDRSQLIDAAIETLKSTLI 340

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             + +V +V  + +L+ +  LVA   + + +++ L  +  LG    + S+ GI + +G  
Sbjct: 341 EESLIVALVCVVFLLHLRSALVAILMLPVGILMALGAMRFLGIGANIMSLGGIAIAVGAM 400

Query: 428 VDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FG 481
           +D+ I++ E   +       +      L         ++F S +   ++ + +F      
Sbjct: 401 IDAAIVMIENAHKHLERAPPDAPRTQILIDAAGEVGPSLFFSLLVITVSFLPIFTLESQE 460

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G      A T   ++  +   ++++V A+M+  +R + +             +   +   
Sbjct: 461 GRLFGPLAFTKTFAMAAAALLSVTLVPALMVVFVRGRIIPEHRNPLNRLLIRLYRPVIRG 520

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +RAR   + ++++    ++      G  +  +   G  + +   
Sbjct: 521 VLRARLLTILLAVVALGATVWPARQLGSEFMPELNEGTLMYMPTT 565



 Score = 67.4 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 74/203 (36%), Gaps = 8/203 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIR 687
            +  + L  +   +     +  + +   +       L    I   +I++ + ++  + +R
Sbjct: 299 ESAKQRLAEIAHSLPAGTEIVPVYDRSQLIDAAIETLKSTLIEESLIVALVCVVFLLHLR 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                AL AI  L + I   LG     GI  N+ ++  +   +G  ++  +V+ +   K+
Sbjct: 359 ----SALVAILMLPVGILMALGAMRFLGIGANIMSLGGIAIAVGAMIDAAIVMIENAHKH 414

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFG 804
           ++          ++  +  E      ++ +   +S LP+          F   A    F 
Sbjct: 415 LERAPPDAPRTQILIDAAGEVGPSLFFSLLVITVSFLPIFTLESQEGRLFGPLAFTKTFA 474

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
           +  AA  S+ +   +++     R
Sbjct: 475 MAAAALLSVTLVPALMVVFVRGR 497



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/158 (15%), Positives = 49/158 (31%), Gaps = 13/158 (8%)

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV------ 740
              +    L  + +L   +   +      G   ++  V   + L G +    V++      
Sbjct: 881  FRRLTETLIVMLSLPFALVGGVWLLWWMGFNLSVAVVVGFIALAGVAAETGVIMLVYLDH 940

Query: 741  ----YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
                   +R       T    R  I     E +   + T  A    +LP+      G  V
Sbjct: 941  ALAEVRAVRDKAGQPLTRDDLRQAIMVGAVERVRPKMMTVAAIMAGLLPILWSTGAGSEV 1000

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   A+PM  G+V +   ++ +   +   I       A
Sbjct: 1001 MQRIAVPMIGGMVSSTVLTLVVIPAVYALIKGRGLPRA 1038


>gi|221308508|ref|ZP_03590355.1| hypothetical protein Bsubs1_03788 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221312831|ref|ZP_03594636.1| hypothetical protein BsubsN3_03744 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221317755|ref|ZP_03599049.1| hypothetical protein BsubsJ_03698 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322034|ref|ZP_03603328.1| hypothetical protein BsubsS_03784 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|52000763|sp|O31501|SWRC_BACSU RecName: Full=Swarming motility protein SwrC
          Length = 1052

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/567 (11%), Positives = 160/567 (28%), Gaps = 37/567 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + V L ++I     L A  N   +S+ D     +                       
Sbjct: 10  KNKFAVWLMTIIVTAAGLYAGMNMKQESIPDVNMPYLT-------------ISTTYPGAT 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    L    +   +  +  + + + +   +  +    +    L+ V
Sbjct: 57  PSQVADEVTKPVEQAVQNLDGVSVVTSTSYENASSVMIEYDYEKDMDKAKTEAAEALENV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N  L  D K   +   +     I+    + D    +  E + ++    + ++   E    
Sbjct: 117 N--LPDDAKDPEISRYSLNSFPILTLSVSSD--KDNLQELTKQVEDSLVSKLEGIEGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S + + ++       +L++       +       + +    ++       S      
Sbjct: 173 VQVSGQQVEEVEFSFKEDKLKEYGLDEDTVKQVIQGSDVTTPLGLYTFGNEEKSVVVSGD 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD-------------- 288
           +E   ++  + +  A+A+    +          +                          
Sbjct: 233 IETIKDLKNMRIPTASASSAGSSAASQAGAQSAQAAQSAQAAAQVQQSASTAVPTVKLSD 292

Query: 289 -NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
               K +                         +     +                     
Sbjct: 293 IATIKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADDVKAE-LKKFKEDHKGFNYSA 351

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                     S           A   ++++ + +   K  L++  SI L++++ L +L  
Sbjct: 352 TLDMAEPITQSVDTMLSKAIFGAIFAIVIILLFLRDIKSTLISVVSIPLSLLIALLVLQQ 411

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTIF 464
           L  TL + ++  + + IG  VD +I+V E I    R           +       +  I 
Sbjct: 412 LDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKALVREATKEMFKPIM 471

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            S I  +   + L   GG     F I   L+I+ ++  ++ I   ++  +      KS+ 
Sbjct: 472 SSTIVTIAVFLPLALVGGQIGELF-IPFALTIVFALAASLVISITLVPMLAHSLFKKSLT 530

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVG 551
             P+      P  +A  + +   W + 
Sbjct: 531 GAPIKAKEHKPGRLANIYKKVLNWALS 557



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 92/236 (38%), Gaps = 3/236 (1%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + ++ ++  +   +    +   +  ++    ++V     ++   KK  E         T
Sbjct: 293 IATIKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADDVKAELKKFKEDHKGFNYSAT 352

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +   I++ +       +  +  A++I +         L ++ ++ L +   L      
Sbjct: 353 LDMAEPITQSVDTMLSKAIFGAIFAIVIILLFLRDIKSTLISVVSIPLSLLIALLVLQQL 412

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  V+D +VV + + + M+L    +  + L+ ++  E     + 
Sbjct: 413 DITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKALVREATKEMFKPIMS 472

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +++      LP+A+ GG +      FA+ + F +  +   SI +   +   ++   
Sbjct: 473 STIVTIAVFLPLALVGGQIGELFIPFALTIVFALAASLVISITLVPMLAHSLFKKS 528



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 95/261 (36%), Gaps = 8/261 (3%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +K    L            V+    +      +          +         S   T V
Sbjct: 789  YKSVKDLENKKITSATGQEVKIGDVAKVKEGSTSDTVSKRDGKVYADVTGEVTSDNVTAV 848

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
               ++KKI ++     +            +   K  + ++ +   + + + I F    A 
Sbjct: 849  SAAIQKKIDKLDHPDNVSIDTGGVSADIADSFTKLGLAMLAAIAIVYLVLVITFGGALAP 908

Query: 695  GAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             AI  +L   +   L    + G   +L A+  +L LIG  V + +V+ DR+   +     
Sbjct: 909  FAILFSLPFTVIGALVGLYVSGETISLNAMIGMLMLIGIVVTNAIVLIDRV---IHKEAE 965

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAA 809
             +S R+ + ++ +  L   + T++A   +++P+A+    G  VI     + +  G++ + 
Sbjct: 966  GLSTREALLEAGSTRLRPILMTAIATIGALIPLALGFEGGSQVISKGLGVTVIGGLISST 1025

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
              ++ I   +   +  +R K 
Sbjct: 1026 LLTLLIVPIVYEVLAKFRKKK 1046


>gi|7445417|pir||C70181 protein-export membrane protein (secD) homolog - Lyme disease
           spirochete
          Length = 585

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 89/211 (42%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +      +  K         I +  I+GP +    I  GI    ++   
Sbjct: 364 NVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCL 423

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + ++I + +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 424 VFLFICVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 483

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 484 IYERIKEEIREGRR---FENAFEAGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 540

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 541 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 571



 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 110/502 (21%), Positives = 197/502 (39%), Gaps = 72/502 (14%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFV------------NGFLQMYSDELRSFLKKEGIGV 88
              I LGLDL GG  + + +D                    +      L+  ++  G+  
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRSLTFAEREDAIYRIMQILKDRVR-FGLTE 191

Query: 89  FSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
             + +    NKI L     + +  ++  ++         ++ +    L     E      
Sbjct: 192 PKIVREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDESTSLLHRKILEAGSLFS 251

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           + +      +  +                       +      +    G  D S +R  +
Sbjct: 252 IPEIQASMNLPDS-----------------------KQIFPWYVKDSYGVDDESSVRYYV 288

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
              +         N+     +       D    +  V   +++ G          +    
Sbjct: 289 VDASP-------ENSFDGAHIKDAGVSNDPRTGRDTVAFSLDVDGSEKFFKFTQKNVGKS 341

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             VV     +  A   + +T  N+                          +    +F  +
Sbjct: 342 LAVVMEGKIKSVAGIGYAITGGNV--------------------------SIQGDSFDKK 375

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA + +  + P+ + I + R +G  LG+ +I  G  A    L L+ LF+ V YG  
Sbjct: 376 EAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCLVFLFICVYYGLS 435

Query: 387 GLVADFSIFL-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
           G+VA FS+ + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ 
Sbjct: 436 GVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREG 495

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +    + + GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++ 
Sbjct: 496 RRFENAFEAGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLI 555

Query: 506 IVRAMMIFIIRYKKMKSIDINP 527
             R ++ FII  +K K I I+ 
Sbjct: 556 FSRFILEFIISVRKSKFISISW 577


>gi|15594997|ref|NP_212786.1| preprotein translocase subunit SecD [Borrelia burgdorferi B31]
 gi|30316347|sp|O51596|SECD_BORBU RecName: Full=Protein-export membrane protein secD
 gi|28976170|gb|AAC66993.2| protein-export membrane protein (secD) [Borrelia burgdorferi B31]
          Length = 586

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 41/211 (19%), Positives = 89/211 (42%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +      +  K         I +  I+GP +    I  GI    ++   
Sbjct: 365 NVSIQGDSFDKKEAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + ++I + +     +   + +I ++   L   + F     LT++A ++  +G +V+  +V
Sbjct: 425 VFLFICVYYGLSGVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIV 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRR---FENAFEAGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIISVRKSK 572



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 110/502 (21%), Positives = 197/502 (39%), Gaps = 71/502 (14%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFV------------NGFLQMYSDELRSFLKKEGIGV 88
              I LGLDL GG  + + +D                    +      L+  + + G+  
Sbjct: 133 SRIIHLGLDLSGGMSVTISLDYSSVEKKLGRSLTFAEREDAIYRIMQILKDRVBRFGLTE 192

Query: 89  FSMRQ--IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
             + +    NKI L     + +  ++  ++         ++ +    L     E      
Sbjct: 193 PKIVREAGGNKIFLDIPGEKDESRVSTLLSGKGNLTFYVVDDESTSLLHRKILEAGSLFS 252

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           + +      +  +                       +      +    G  D S +R  +
Sbjct: 253 IPEIQASMNLPDS-----------------------KQIFPWYVKDSYGVDDESSVRYYV 289

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
              +         N+     +       D    +  V   +++ G          +    
Sbjct: 290 VDASP-------ENSFDGAHIKDAGVSNDPRTGRDTVAFSLDVDGSEKFFKFTQKNVGKS 342

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
             VV     +  A   + +T  N+                          +    +F  +
Sbjct: 343 LAVVMEGKIKSVAGIGYAITGGNV--------------------------SIQGDSFDKK 376

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
            A  LA + +  + P+ + I + R +G  LG+ +I  G  A    L L+ LF+ V YG  
Sbjct: 377 EAQDLALVFKTAAFPVDIKIDDLRIIGPTLGARTIDLGIKASALALCLVFLFICVYYGLS 436

Query: 387 GLVADFSIFL-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
           G+VA FS+ + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ 
Sbjct: 437 GVVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIVIYERIKEEIREG 496

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           +    + + GF +A+ +I D+NIT  IA + L   G G ++GFA ++ + I+ S+F+++ 
Sbjct: 497 RRFENAFEAGFKKAFLSIMDANITTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLI 556

Query: 506 IVRAMMIFIIRYKKMKSIDINP 527
             R ++ FII  +K K I I+ 
Sbjct: 557 FSRFILEFIISVRKSKFISISW 578


>gi|301643828|ref|ZP_07243863.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 146-1]
 gi|301077810|gb|EFK92616.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 146-1]
          Length = 1047

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 155/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P            D++          
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLS---------DVQVSIKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|237667110|ref|ZP_04527094.1| protein-export membrane protein SecD [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|237655458|gb|EEP53014.1| protein-export membrane protein SecD [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 419

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 93/272 (34%), Gaps = 6/272 (2%)

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
            +S      +   L      Y +  +   +  V        S        + + D +   
Sbjct: 131 ILSGSDVKKATAQLNQQTGKYEVGLEFNDEGTVKFAD--ATSKYIGQKIGIYLDDEAISE 188

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
              +           G    +             +       + + VG ++        I
Sbjct: 189 PTVQVAITDGKASITGSETLEENKALAGMINSGALPVPVKSISVKNVGAQLGATAFPNAI 248

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
               I    + +++ + ++    L A   L L I   L  F   G+   L  +AA+L  I
Sbjct: 249 KAGAIGIGLVFLFMLVMYR-REGLFADIALTLYIFLILIIFVEVGVTLTLPGIAALLLTI 307

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G +V+  +++++R ++ ++     +S +  I +     L   V +++   +  L +   G
Sbjct: 308 GMAVDANILIFERTKEELR---KGVSVKTAIKRGSENALSSIVDSNVTTILCALILYFIG 364

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              +  FAI +  GI+V+  +++ +   ++  
Sbjct: 365 SGSVKGFAITLMIGILVSLFTALIVTKLLVNL 396



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 118/368 (32%), Positives = 204/368 (55%), Gaps = 26/368 (7%)

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           VL +   D V    +E + + +  R++++G++E+ +   G  RI + +PG+ D + + + 
Sbjct: 55  VLMEIQKDDVTQEELESTKQHLELRVNKLGVAETVVTTEGDKRIRVDIPGQFDSNEIVKS 114

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
           L  +  + F                             + +  +SG  +  ATA  + +T
Sbjct: 115 LSQSGNLVF--------------------------KGPDGEEILSGSDVKKATAQLNQQT 148

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            K  V + F++ G  +F + T   IG+ + + LD   ++ P +  AI  GKA I+G+ T+
Sbjct: 149 GKYEVGLEFNDEGTVKFADATSKYIGQKIGIYLDDEAISEPTVQVAITDGKASITGSETL 208

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           E    LA M+ +G+LP+ +  +  +NVGA LG+ +      A   G+ L+ LFM+V+Y +
Sbjct: 209 EENKALAGMINSGALPVPVKSISVKNVGAQLGATAFPNAIKAGAIGIGLVFLFMLVMYRR 268

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
            GL AD ++ L + L L +   +G TLTLP IA ++L IG+AVD+NIL+ ER +EE RK 
Sbjct: 269 EGLFADIALTLYIFLILIIFVEVGVTLTLPGIAALLLTIGMAVDANILIFERTKEELRKG 328

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
            SV  ++  G   A S+I DSN+T ++  ++L+F G G+V+GFAIT+ + IL+S+FTA+ 
Sbjct: 329 VSVKTAIKRGSENALSSIVDSNVTTILCALILYFIGSGSVKGFAITLMIGILVSLFTALI 388

Query: 506 IVRAMMIF 513
           + + ++  
Sbjct: 389 VTKLLVNL 396



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 2/124 (1%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ N         +    +           ++  +      + I+ GLDL+GG  +++E+
Sbjct: 1   MKKNG-KSAALLGVIVAVIAFLAFAGFKGLVIGDYAFKSFNSAITRGLDLQGGVSVLMEI 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
            +DD     L+     L   + K G+    +    + +I +          I   ++   
Sbjct: 60  QKDDVTQEELESTKQHLELRVNKLGVAETVVTTEGDKRIRVDIPGQFDSNEIVKSLSQSG 119

Query: 120 QGVN 123
             V 
Sbjct: 120 NLVF 123


>gi|172065023|ref|YP_001815735.1| acriflavin resistance protein [Burkholderia ambifaria MC40-6]
 gi|171997265|gb|ACB68182.1| acriflavin resistance protein [Burkholderia ambifaria MC40-6]
          Length = 1076

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 75/634 (11%), Positives = 163/634 (25%), Gaps = 44/634 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G L  L         D FP+                  +V   
Sbjct: 8   LRRPYTFVVLALLIFIAGPLAIL-----SMPTDIFPNIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMAKRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + + +     +           Q+   
Sbjct: 112 NSASILRILPPGTLPPNIITYNASTVPILQLGLSSNTLAEQ--QLYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + D   L+        +       N    G    +     + 
Sbjct: 170 QGAAVPLPFGGKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGTAKIGTREYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     ++    +     +     ++    A  
Sbjct: 230 QMNGSTQTVAAL--------------------NNLPVKTIDGNVVYVHDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S    I+    +   + AG                   
Sbjct: 270 TNIVRVDGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGLPKALHISALGDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   SI L V+ +L  L  LG T+ + ++
Sbjct: 330 AVQGVVREALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSLLALGALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     + + +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLERGEPLEDAILTGSGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G         A  +  +++ S F + ++V  + + ++R K          +R    
Sbjct: 450 FMLTGVARYLFVPLAEAVIFAMVASYFFSRTLVPTLAMVLMRAKGQGRPPRGVFARIARF 509

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +F   R     +                L            G      VD   +
Sbjct: 510 QAAFERRFEAVRLRYRALLSAAISNRRRFAAAFLLACAASTGLFAFAGQDFFPSVDTGEI 569

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           R +L +     I       ++         P + 
Sbjct: 570 RLHLRAPTGTRIEETARLTDEVEARIRTVIPANQ 603



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    ++ L +  +L      G   N+  +  +   +G
Sbjct: 338 ALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSLLALGALGQTINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +              D I     E    +  ++++  I  +PM +  G
Sbjct: 398 ILVDDATVAIENI---THHLERGEPLEDAILTGSGEIAVPTFVSTLSICIVFVPMFMLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  ++ A  +S F +  ++  +
Sbjct: 455 VARYLF-VPLAEAVIFAMVASYFFSRTLVPTL 485



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + I+   + + + + F  W   L  +  L   +        +     ++ A+   +  IG
Sbjct: 902  LAIAIALVYLLMVVNFQSWLDPLVIVGGLPASLAGIAWMLFVTRTTLSVPALTGTILCIG 961

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+   L  +  S      ++        V T++A  I +LPMA+   
Sbjct: 962  IATANSILVVNAARE---LIASGSSPWQAALEAGFSRFRPVVMTALAMLIGMLPMALGLG 1018

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             GG         +  G+     S++     +  FI+ W
Sbjct: 1019 DGGEQNAPLGRAVIGGLAFGTLSTLLFVPVLFGFIHAW 1056


>gi|254458152|ref|ZP_05071578.1| acriflavin resistance protein D [Campylobacterales bacterium GD 1]
 gi|207084988|gb|EDZ62274.1| acriflavin resistance protein D [Campylobacterales bacterium GD 1]
          Length = 1047

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/665 (12%), Positives = 183/665 (27%), Gaps = 30/665 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +   +I   GL+      L Q      P+ +             G   +    
Sbjct: 9   KKPVSVFVGIVLIMMFGLVA-----LTQLPYKLTPNVIEPEI---------GVVTLWPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E             +     ++ITL+F           +V+  L  
Sbjct: 55  TPSEVERDIVEKQEEQLKSTPGLVNYEATASDNLSEITLTFEVGTDMNKALLEVSNKLNQ 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSM-EIIRQRIDQIGISEST 180
           V++    + +K ++ +        +      ++     ++  +  +  +  +Q    +  
Sbjct: 115 VDTY-PENVQKPIIQSAGSNASPTIWMGFVANEGNDRDVDTYLTYLDNEVKEQFERVKGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      +L  +  P RL     T   ++      N              D D   
Sbjct: 174 ASIFVPGGTKDELHIKLFPQRLAAHGLTIDAVASAIGNENVDTAAGTV------DIDRRT 227

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y V      + I        F+       +    +                    +   G
Sbjct: 228 YRVRTSARFTSIQELEQMVLFNDGQKSIRLGDVAEISKGYEKVVA--------NILQSSG 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L   +I        A +          +                      G   G+  
Sbjct: 280 DKLNKALIYGVRMDPSANVVETTNRVEEVVTNLNKNVLPAHNIHLEWYYDQRGYIQGAID 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           + +   A+ A L +I+L + +       V   +I ++++ T  +L+++  +L   S+AGI
Sbjct: 340 LVQQNIAVGAVLAIIILLLFLRSFLPTAVVSAAIPISIVATFIVLNIMDRSLNTISLAGI 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +G+ +DS I+V E I    +  +  F +   G    +  +  S +T +   + + F 
Sbjct: 400 SFAVGMLLDSAIVVLENIDRHLKMGKKPFDAAHDGTVEVWGALVASALTTIAVFLPVIFL 459

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
              A + F            F+    +  + +F  +  KM S D          PD   +
Sbjct: 460 ESEAGQLFKDIAIAVTAAITFSLFVSISVIPMFWTQLIKMSSKDHEKEHEVSQRPDSFLV 519

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              +        ++++S+      F   L         I +       +        +  
Sbjct: 520 SMAKKIAGLFMSTVVWSLKRRINQFIMILFMASISVATIMVLFPKMEYLPQGNQNLIMNI 579

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           L       +N   +    +    +P        +  + +        L           +
Sbjct: 580 LIPPPGLSENEKKDIGHKIYEYMKPHYKDEVNGIPPIKESFYVSFGDLMIQGMISKEESR 639

Query: 661 ISREL 665
            +  +
Sbjct: 640 SAEYI 644



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 90/262 (34%), Gaps = 11/262 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            Q+       V +S +     +  I  I   +        V          +  R+ ++VK
Sbjct: 786  QVTTPKAGLVPMSELSELKHTTSITKIRHVDGKRTITLQVTPPTTMTLEESVERLEKIVK 845

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            + +   +                 + I      ++ +   + + +   F  + + L  + 
Sbjct: 846  EGVPPAMLQDGTDVKLAGKADKLAQTIESMKWNLVFALAIIYLLMSALFGNFIYPLVILF 905

Query: 699  TLILD-----ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            T+ +      +   L    +     ++  +   + LIG  VN+ +++  +   N++    
Sbjct: 906  TVPMATAGGFVGLKLTNMFIAPQPLDVLTMLGFIILIGIVVNNAILIVHQSLNNIRH--N 963

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
            S++++D I ++    L     +S+ +   +LP+ +    G          +  G+ ++  
Sbjct: 964  SMNYKDGIIEATRSRLRPIFMSSLTSVFGMLPLVLIPGPGSEFYRGLGSVITGGLALSML 1023

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             +I +   ++  +     K  +
Sbjct: 1024 FTILVTPALMYLMLSISGKKEK 1045



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/209 (11%), Positives = 67/209 (32%), Gaps = 9/209 (4%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             +     V+  + K +     +      +  G       + +  + V      +++ ++
Sbjct: 300 ETTNRVEEVVTNLNKNVLPAHNIHLEWYYDQRGYIQGAIDLVQQNIAVGAVLAIIILLLF 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +R     A+ +   + + I  T     +     N  ++A +   +G  ++  +VV + + 
Sbjct: 360 LRSFLPTAVVS-AAIPISIVATFIVLNIMDRSLNTISLAGISFAVGMLLDSAIVVLENI- 417

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA----FISVLPMAVWGGSVIGSFAIPM 801
              +         D       E  G  V +++         V+ +    G +    AI +
Sbjct: 418 --DRHLKMGKKPFDAAHDGTVEVWGALVASALTTIAVFL-PVIFLESEAGQLFKDIAIAV 474

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              I  +   SI +       +    +K+
Sbjct: 475 TAAITFSLFVSISVIPMFWTQLIKMSSKD 503


>gi|289163892|ref|YP_003454030.1| multidrug efflux transporter [Legionella longbeachae NSW150]
 gi|288857065|emb|CBJ10880.1| putative multidrug efflux transporter [Legionella longbeachae
           NSW150]
          Length = 1023

 Score =  129 bits (322), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/516 (11%), Positives = 152/516 (29%), Gaps = 39/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++  M+  +GL       +    + ++P       ++                
Sbjct: 9   KRPVLATVISLMLLAMGL-----RSINSLPIMQYP-FTENAIVT--------VTTTYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + D + GF+    +   +                + IT++   +         +T  +  
Sbjct: 55  DPDVIAGFITTPLENSIAQANGIDYMTSISSPSTSTITVNLRLNYDPLKALSDITTKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  + ++ ++  +  + I  +      D++  +  + +  IIR    ++       
Sbjct: 115 VLNQLPKNSQQPVITVSVGQTIDSMYIGFYSDELPIN--KITDYIIRVVQPKLQAVNGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP +L     + A++       +          +          
Sbjct: 173 NAQILGNQTFALRAWLDPVKLAGYGISAAEIGAALANNDFISAVGRTDGQMF-------- 224

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       +   TA+ +         +                 +           
Sbjct: 225 ------------IQNLTASTNLTDVNQFKKMVIKAQNGAIIHLEDVATVSLGAQNYNSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    I+    +   ++          +          S   
Sbjct: 273 SFDGRTAVYVGILVAPSANLLTVIDDIKKIFPTIQEQLPQGLNGKIVYDASLFVHSSIHE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      +V  V+F+ +   +  L+   +I L++I    ++ +LG ++ L ++  +V
Sbjct: 333 VIVSLLEAFLIVTAVIFLFLGSMRSVLIPIVAIPLSLIGAFWIMLILGYSINLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E ++    + Q+   +  +G     + I    I  +   + + F G
Sbjct: 393 LAIGLVVDDAIIVVENVQRHIEEGQTRLKAALLGARELANPIIAITIVLIAVYLPIGFMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G     FA ++  ++ +S   A+++   M   +
Sbjct: 453 GLTGALFTEFAFSLAGAVTVSAVIALTLSPMMCSKL 488



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 70/192 (36%), Gaps = 9/192 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               ++   +++++ + +    + +  +       E+I   +   +I    + +++    
Sbjct: 297 DDIKKIFPTIQEQLPQGLNGKIVYDASLFVHSSIHEVIVSLLEAFLIVTAVIFLFLG--- 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  I  + L +        + G   NL  + A++  IG  V+D ++V + +    
Sbjct: 354 SMRSVLIPIVAIPLSLIGAFWIMLILGYSINLLTLLALVLAIGLVVDDAIIVVENV---Q 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      +          E     +  ++      LP+   G   G++   FA  +A  +
Sbjct: 411 RHIEEGQTRLKAALLGARELANPIIAITIVLIAVYLPIGFMGGLTGALFTEFAFSLAGAV 470

Query: 806 VVAASSSIFIAA 817
            V+A  ++ ++ 
Sbjct: 471 TVSAVIALTLSP 482



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 78/257 (30%), Gaps = 14/257 (5%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +   +   V LS V      +    ++                      A   +  +  +
Sbjct: 767  IKTSSGASVPLSTVAELQRQIVPESLNHFQQLNSATISAVAFPGVTMGHALETLANIANQ 826

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +   +     +     + +  +          + I + + +   F+ +   L  + +
Sbjct: 827  TLPQGYYIDYGAQSRQFIQEGANLIFT-----FFFALIIIFLALSALFESFRDPLIVLIS 881

Query: 700  LILDI--TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            + + I          +     N+ +   ++TLIG      +++         L       
Sbjct: 882  VPMSICGAMIFVSLGIGHATLNIYSEVGLVTLIGLISKHGILIVQFAND---LQAEGQKK 938

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
               I  +    L   + T+ A  + V+P+      G     +  + +A GI +    ++F
Sbjct: 939  LAAIKAAAAIRLRPILMTTAAMVLGVIPLIFATGAGAESRFNIGLVIAMGISIGTLFTLF 998

Query: 815  IAAPILLFIYDWRAKNA 831
            +   + L +    AK A
Sbjct: 999  VVPAMYLLLAADHAKRA 1015


>gi|320176977|gb|EFW52000.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Shigella dysenteriae CDC 74-1112]
          Length = 1047

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 93/288 (32%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       +V+K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIVEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGGAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|331656600|ref|ZP_08357562.1| cation efflux system protein CusA [Escherichia coli TA206]
 gi|331054848|gb|EGI26857.1| cation efflux system protein CusA [Escherichia coli TA206]
          Length = 1047

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 173/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  + ++  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTALWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|88854848|ref|ZP_01129514.1| putative integral membrane efflux protein [marine actinobacterium
           PHSC20C1]
 gi|88816009|gb|EAR25865.1| putative integral membrane efflux protein [marine actinobacterium
           PHSC20C1]
          Length = 1062

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 67/525 (12%), Positives = 144/525 (27%), Gaps = 40/525 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN   + ++  +I   G +               P     +                  
Sbjct: 20  LRNRALIALVTIVIGIFGGVALTSLKQELIPSLSLPQIFIVS--------------TYPG 65

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V+  L    +     +        +     + I+ SF           K+ L + 
Sbjct: 66  ASPAVVDKDLSAPIEAAIQGVPGLESTTATSNSNFSNISASFEYGTNIATAEQKIQLAIN 125

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            ++ +L        + T    ++ +V    + D     A E S ++    +  +   +  
Sbjct: 126 RISGQLPGSADTQ-VFTFNFTDLPVVQIAVSSD---LDARELSRKLEASTLVDLKKLDGV 181

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      ++    DP +L     T   +                        DG  
Sbjct: 182 SDASLLGTSTQRVVITPDPKKLLANGLTNQDIRAALDDNGVLLPAGEI------TEDGQT 235

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+    I+      A                                +          
Sbjct: 236 LTVQAGNRITTADAISALP-------------LLGGTNTEVVTLDDVSTVEVIDDPETGI 282

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          +     +     +    L   L +         V          S +
Sbjct: 283 SRVDGEDALTIAITKSPSGNTVAVSQAVNELIPELESALGSNTKFTVVFDQAPFIQESIN 342

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +     +IV+ + +L  +  LV   SI  +V++T   + + G TL + ++  +
Sbjct: 343 SLTTEGLLGLVFAVIVILVFLLSIRSTLVTAISIPASVLITFIGMQVSGYTLNIITLGAL 402

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD +I+V E I+      +    ++          I  S +T +   + L   
Sbjct: 403 TISIGRVVDDSIVVIENIKRHVSMGEPKLQAIQTAVKEVAGAITASTVTTIAVFLPLALV 462

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           G   G   R FA+T  +++  S+F +++IV  +  + +  K    
Sbjct: 463 GDITGELFRPFALTTAIALAASLFVSLTIVPVLAYWFLGNKVAPR 507



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 79/203 (38%), Gaps = 9/203 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A   ++  ++  +      + + +      +    L  +G++G++ + I +L+++   
Sbjct: 307 SQAVNELIPELESALGSNTKFTVVFDQAPFIQESINSLTTEGLLGLVFAVIVILVFLL-- 364

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    ++   +  T     + G   N+  + A+   IG  V+D +VV + ++  
Sbjct: 365 -SIRSTLVTAISIPASVLITFIGMQVSGYTLNIITLGALTISIGRVVDDSIVVIENIK-- 421

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            +  +        I  ++ E  G    +++      LP+A+ G   G +   FA+  A  
Sbjct: 422 -RHVSMGEPKLQAIQTAVKEVAGAITASTVTTIAVFLPLALVGDITGELFRPFALTTAIA 480

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
           +  +   S+ I   +  +    +
Sbjct: 481 LAASLFVSLTIVPVLAYWFLGNK 503



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 78/230 (33%), Gaps = 4/230 (1%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              + P    +V     +    +    +    K            S        +V   + 
Sbjct: 784  DFDIPSAAGLVPLTDVATVDVEDGPASITSVKGVRSATLSVTPGSDDVGTASALVAAAVD 843

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
            E    +              +  ++  + ++++ + + + +   F      L  + ++  
Sbjct: 844  EADLPAGASAELGGVATEQTDAFQQLGLALLVAILIVYVVMVATFKSLRQPLLLLVSVPF 903

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
              T  +    + GI   + ++  VL LIG  V + +V+ D + +        +  R+ I 
Sbjct: 904  AATGAIALQVISGIPLGVASLIGVLMLIGIVVTNAIVLVDLINQYR---VKGMRAREAII 960

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
            +  +  L   + T+ A   ++LP+ +      G  + P+A  ++    SS
Sbjct: 961  EGSSRRLRPILMTAAATIFALLPLGIGLTGEGGFISQPLAIIVIGGLVSS 1010


>gi|332093017|gb|EGI98083.1| inner membrane domain protein [Shigella boydii 3594-74]
          Length = 340

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 27/327 (8%), Positives = 67/327 (20%), Gaps = 37/327 (11%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGTLAIF-----SLPVEQYPDLAPP-------------NVRVTANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  +TLSF      +    +V  
Sbjct: 50  PGASAQTLENTVPQVIEQNMTGLDNLMYMSSQSSGTGQASVTLSFKAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQNQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                                P++L     T   ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLAPAKLNSFQMTAKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                +  +  +                 +                      +       
Sbjct: 229 ALNATINAQSLL-------------QTPEQFRDITLRVNQDGSEVRLGDVATVEMGAEKY 275

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFT 324
                      +       +  +   T
Sbjct: 276 DYLSRFNGKPASGLGVKLASGANEMAT 302


>gi|150021768|ref|YP_001307122.1| protein-export membrane protein SecD [Thermosipho melanesiensis
           BI429]
 gi|149794289|gb|ABR31737.1| protein-export membrane protein SecD [Thermosipho melanesiensis
           BI429]
          Length = 477

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 129/533 (24%), Positives = 213/533 (39%), Gaps = 67/533 (12%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ N    I+  ++  +  L  L  +          S    NRI LGLD+ GG+ +   V
Sbjct: 1   MKENKVRGIITLVVIALAFLSLL--WPSSKGYQGVLSIF--NRIKLGLDISGGARIEYRV 56

Query: 61  DEDDFVNG---FLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIAD 113
           D D  V       +     LR+ L         +    R+    I +    +        
Sbjct: 57  DIDKSVENPSKVAEDVWTVLRNRLDMANYTEAVVKQTFREENTFIIVEIPGATDTAQAEQ 116

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +         ++  +   N  +                        E   E  R++   
Sbjct: 117 LIGSTGLLWFGQVVDETTGNPNID----------------------PELVNEAKREKAQW 154

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   E     L    I      +    ++ + +                           
Sbjct: 155 LLDREGKKWYLVKKEIANISNLKLVSPKIVEAIPQ------------------------- 189

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    V+       +        +     +    +   E    +        + K 
Sbjct: 190 ---------VDRNNVAGYVVTFKMDKEYVDIFRRITEKLYVPEELLNQGGVAYSQAMKKR 240

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+VLD RV  A  +   I  G A I GNFT++ A  LAA+L++G+LP +L  V    V 
Sbjct: 241 LAIVLDNRVQFAGFVTAKITDGSALIKGNFTLDEAKQLAAILKSGALPARLEKVSSGWVA 300

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LG D I     A + G+V+++++MIV YG  G+VAD ++  N  L L +L+  G+ LT
Sbjct: 301 PLLGKDIIEASIKAGIVGVVIVLIYMIVFYGVMGIVADIALLYNTFLLLGVLATTGSILT 360

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGI+L IG  VD NI++ ERI+EE R+  SV  ++   FS+++ T+FD+N+T +IA
Sbjct: 361 LPGIAGIILTIGTTVDGNIIIYERIKEEIRRGSSVKAAISTAFSKSFITLFDANLTTIIA 420

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            + L++FG G V+GFAIT+ + +L S+F  + + R  +       K++     
Sbjct: 421 GLFLYYFGTGTVKGFAITLIIGVLGSLFVNLVVSRFFLDLFSSGIKVRRTSKG 473



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 42/350 (12%), Positives = 117/350 (33%), Gaps = 13/350 (3%)

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             +    +     ++       +I   ++    R K    +D      + +  +   I  
Sbjct: 116 QLIGSTGLLWFGQVVDETTGNPNIDPELVNEAKREKAQWLLDREGKKWYLVKKEIANISN 175

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ---------LGVLANRPVDLSV 593
           ++     +  +I     +    +        ++    +           +L    V  S 
Sbjct: 176 LKLVSPKIVEAIPQVDRNNVAGYVVTFKMDKEYVDIFRRITEKLYVPEELLNQGGVAYSQ 235

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                 ++ + +                    G+             K   +       +
Sbjct: 236 AMKKRLAIVLDNRVQFAGFVTAKITDGSALIKGNFTLDEAKQLAAILKSGALPARLEKVS 295

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
           +  V P + +++I   I   I+  + +LIY+ + +     + A   L+ +    LG  A 
Sbjct: 296 SGWVAPLLGKDIIEASIKAGIVGVVIVLIYMIVFYGV-MGIVADIALLYNTFLLLGVLAT 354

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G    L  +A ++  IG +V+  +++Y+R+++ ++      S +  I  + +++     
Sbjct: 355 TGSILTLPGIAGIILTIGTTVDGNIIIYERIKEEIR---RGSSVKAAISTAFSKSFITLF 411

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             ++   I+ L +  +G   +  FAI +  G++ +   ++ ++   L   
Sbjct: 412 DANLTTIIAGLFLYYFGTGTVKGFAITLIIGVLGSLFVNLVVSRFFLDLF 461


>gi|254458988|ref|ZP_05072411.1| RND transporter, HAE1/HME family, permease protein
           [Campylobacterales bacterium GD 1]
 gi|207084259|gb|EDZ61548.1| RND transporter, HAE1/HME family, permease protein
           [Campylobacterales bacterium GD 1]
          Length = 1016

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 82/671 (12%), Positives = 191/671 (28%), Gaps = 46/671 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++    +   GL+              FP+                   V    E
Sbjct: 8   RPITTLMYVVALIIFGLMS-----FKSMPSALFPNIDFPMVT---------IKTVYPGAE 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +E  S +      + +  +  + +T+ F   R  +   + V   +  V
Sbjct: 54  ASTIESQVTDKIEEAVSRIGGIDNIISTSSEGVSVVTVKFFLERDIDEATNDVRDKVSAV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              +  D K  L+        SI+                 +    +   +I        
Sbjct: 114 --IMPRDAKTPLVSKLDIGGASIINIFLTAKN--ETIQNLMLFADEKVKPKIQKINGVGA 169

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++    +P  L +   T  +++      N    G              +  
Sbjct: 170 VNIIGYKDREIKIYPNPRLLNKFGITVRELNEIVAKENVKIGGGKLITNTQEFILKTKAD 229

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                E+  I +                                   +   L+       
Sbjct: 230 ALSVQELENIKIKDD------------------------IKLKDIATVTDALSDAKSYAS 265

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +    ++    +   L+  +       +        + S    
Sbjct: 266 YNGEEGVMLEVQKISGTNTIDIVKNVKKVVPQLQGYAKDNYEVKILNDTTPFIIHSLEDV 325

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +      A L  I++ + +      LV+  SI  +++ T AL+  +G  L   ++ G+ L
Sbjct: 326 EFDLIYGAFLAAIIVLIFLRNMTITLVSALSIPASIMGTFALMDYMGFDLNRMTLIGLTL 385

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG+ +D  I+V E I ++  +    F +   G      TI   +   L   + + F   
Sbjct: 386 AIGIIIDDAIVVIENIYKKMEEGMGKFEASVEGTKEMAFTILAISAMLLAVFIPVSFMSG 445

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     FA+T+G +I+IS   A+S + ++   ++   + K  D        L      
Sbjct: 446 IVGKFFESFAMTVGFAIIISYTIALSFIPSISARVLHKGESKFYDKTEPIFKALERGYEK 505

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-KGGIQLGVLANRPVDLSVVRSNL 598
           I  +  RF    + ++F I    L     +       +   ++ +       +S+     
Sbjct: 506 ILKLVLRFKVSTLILVFVIFFASLSLFPKIGMDFIPKEDKSEIEIKIKADSGISLQEMIR 565

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           +S ++ D+   + +     L        +       +++++K   E+      Q+     
Sbjct: 566 KSKEVEDLIRADENVVYTTLTIGYNTAQEKHKALMYVKLIEKDERELNQEEVTQSLRAKM 625

Query: 659 PKISRELIRKG 669
              ++++    
Sbjct: 626 KPFAKDMFITA 636



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 66/156 (42%), Gaps = 5/156 (3%)

Query: 671 VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           V + +S I M I + + ++     +  +  L L I   +      G++F+L  +   + L
Sbjct: 843 VAIGLSVILMFIILAVLYESLIQPIIIMMALPLSIIGVMLALYASGLQFSLFVMIGFMLL 902

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G    + V++ D          +       + ++  + L   + T++A   ++LP+A+ 
Sbjct: 903 MGMVGKNAVLLVDFAN---NAVESGKDADSALIEAGEKRLRPILMTTIAMVFAMLPLAI- 958

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           G  +      PMA  I+    SS+ +   I+  +Y 
Sbjct: 959 GDGLGSETKAPMAISIIGGLLSSMVLTLLIVPVMYR 994


>gi|119896518|ref|YP_931731.1| putative cation efflux system protein [Azoarcus sp. BH72]
 gi|119668931|emb|CAL92844.1| putative cation efflux system protein [Azoarcus sp. BH72]
          Length = 1043

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 89/646 (13%), Positives = 192/646 (29%), Gaps = 44/646 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  +++ L  ++   G   A      ++ +D FP       +   L   GG         
Sbjct: 12  NRLFVLALALLMMAYGAYTAW-----KTPVDVFPDL--NKPVVTVLTEAGGM-------A 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +              + +   F            V+  L  V
Sbjct: 58  PEEVEQLVTFPLETALGGMPGVTRVRSVSGVGLSIVYAEFDWGTDIYRNRQLVSERLSLV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       +   ++     +++           A++           ++       Q
Sbjct: 118 REQLPTGITPMMGPVSSIMGEVMLIGLPLAADGKVSAMQAREYADFVLRPRLLSIAGVSQ 177

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            +     + QL  E D +R+ Q+  +  ++        ++  G    +        +   
Sbjct: 178 VIPIGGEVRQLRVEPDTARMAQVGVSLTQVEEALRGFASNAGGGFIDLNRREYLIRHLGR 237

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  +++G+ +                     + G     E        P     D   
Sbjct: 238 GNNVEDLAGLAVA-------------------WKDGRPVLLEQVATVRFAPSLKRGDAGY 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +  ++       +   T +    LA +       +    V  R       S    
Sbjct: 279 NGGPAVIVSVQKQPDADTVKLTGQIEVALAELDHGRPAGLAAPKVLFRQANFIEASIGNV 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                  A +V IVLF  +L  +  L++  +I L++ +T  +  LLG ++ + ++ G+ +
Sbjct: 339 SEALRDGAIMVAIVLFAFLLSARTTLISLVAIPLSLAVTALVFQLLGQSINVMTLGGLAI 398

Query: 423 GIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IG  VD  ++  E I    ++N+       V   +        S I  + I   +  V 
Sbjct: 399 AIGELVDDAVVDVENILRRLKQNRALPNPAPVLEVVAAASVEVRSGIVYATIIVCLVFVP 458

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           LF      G       I   +SIL SM  ++++  A+  F++   K      +PL     
Sbjct: 459 LFALPGIEGRLFSPLGIAYIVSILASMLVSMTVTPALSSFLLPRMKRLDHGDSPLVAKLK 518

Query: 534 IPDCI--AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           + D       F RA+      ++  +  +  + F          +G + LG++ N    L
Sbjct: 519 VWDAKLLTWSFPRAKLLIGIAALAVAAAAASVPFFPRAFLPAFNEGSLVLGMVLNPGTSL 578

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                     +                 R +            +++
Sbjct: 579 EEANRLGALAETLIREVPEVTQVGRRTGRAELDEHAEGVHAAEIDV 624



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 8/162 (4%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + +  ++           L ++  + L +  T   F L G   N+  +  +   IG  V
Sbjct: 345 GAIMVAIVLFAFLLSARTTLISLVAIPLSLAVTALVFQLLGQSINVMTLGGLAIAIGELV 404

Query: 735 NDKVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           +D VV    +  R+++N +         +++  +  E     VY ++   +  +P+    
Sbjct: 405 DDAVVDVENILRRLKQN-RALPNPAPVLEVVAAASVEVRSGIVYATIIVCLVFVPLFALP 463

Query: 791 GSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           G     F    I     I+ +   S+ +   +  F+     +
Sbjct: 464 GIEGRLFSPLGIAYIVSILASMLVSMTVTPALSSFLLPRMKR 505



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 83/240 (34%), Gaps = 7/240 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + ++Q  D   Q         + +      S     + ++        +P       E
Sbjct: 788  SAIATVQETDGPNQVGRENGRRRIVVYANTDGSDMGRVIADVRAVIARTPMPAGNFVTLE 847

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFFALF 714
                   +       + + +S   + + ++ R+K     G I   I L +  ++    L 
Sbjct: 848  GQFQAQEQATRLIAGLSL-VSLAMIFLVLYSRYKSAVLAGVIMANIPLALIGSVVAMWLA 906

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+  ++ ++   +TL G +  + ++       N+  +        +I +   E L   + 
Sbjct: 907  GVTLSVASMVGFITLAGIATRNGILKVSHYI-NLCRFEGETFGDAMIVRGSLERLTPVLM 965

Query: 775  TSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            T++ A  ++ P+ +     G  ++   A+ +  G+V +      +   I   + +   + 
Sbjct: 966  TALVAAFALTPLLLAADAPGKEILHPVAVVIFGGLVSSTLLDTLLTPVIFRLVGEKPTRR 1025


>gi|311693006|gb|ADP95879.1| heavy metal efflux pump, CzcA family [marine bacterium HP15]
          Length = 1065

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/586 (12%), Positives = 167/586 (28%), Gaps = 41/586 (6%)

Query: 54  SHLVLEVDED------DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF 107
           +++ + V+ +      + V   +    + +   L          +   + +T+ F +   
Sbjct: 43  TNVQVAVNTEAPGLAAEEVEQLITYPIEAVMYALPDVEEVRSISKTGLSGVTVVFKEGTD 102

Query: 108 KENIADKVTLFLQGVNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEI 166
                  V   LQ     +        +   T+                   A+E     
Sbjct: 103 IYFARQLVFERLQAARELIPDGVGVPEMGPNTSGLGQVYQYLLIADPNSGYDAMELRSLH 162

Query: 167 IRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
                  +  +E   + L     + Q     +P+R+     +   +       N++  G+
Sbjct: 163 DWLVKLLLIPAEGVTEILSFGGEVRQYQVNLNPARMLSYDLSQNDVMHALENNNSNVGGW 222

Query: 227 MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
             G          Q ++     +             P      + ++ D++         
Sbjct: 223 YMG------RGQEQLVIRGMGWLGNGEQGLEQIRQVPVKTSDGITVTVDDVAQVGLGTEI 276

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
           R           DG+V     +   I   +   +   TI+        +           
Sbjct: 277 RQGAVTMTRKDEDGQVEQLGEVVSGIVLKRMGANTKATIDGIEARIERINQALPSGVRFE 336

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
                      +         +    + IVL + ++  +   +   SI +++ + L +++
Sbjct: 337 PYYNQADLVTKAVETVTNALLLAFVFIAIVLALFLMNLRATTLVLLSIPISIGIALMIMA 396

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS--------------- 451
             G +  L S+ GI + IG+ VD ++++ E + +      +   +               
Sbjct: 397 WFGLSANLMSLGGIAVAIGMLVDGSVVMVENMFKHLTHPDAEHDAHRDELIENDPDPLDA 456

Query: 452 ----------LDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILI 498
                     L          IF +    L+  + LF F G      +  AI++ L+I+ 
Sbjct: 457 SHDDHGIALRLQEAGREVARPIFFATAIILVVFMPLFSFEGVEAKLFQPMAISIMLAIVS 516

Query: 499 SMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
           ++  A+ +V A+  F+ R    +           L    +       R      ++L  +
Sbjct: 517 AVIVALIVVPALASFVFRKGIRERESFVLKPLEKLYRQGLDWSLKHTRSVVGAAAVLVVL 576

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            ++ +            +G I L V       L         L+  
Sbjct: 577 AALVVPRLGTEFVPELEEGTINLRVTLAPSSSLDTAIEVAPKLEAM 622



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 83/234 (35%), Gaps = 9/234 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++  + I     Q    +    V +Q         + V ++     +E+           
Sbjct: 828  DVADVSIESGPPQVRRDDVQRRVVIQSNVQGRDMGSVVADIQDTIASEVNLPPGYSVDIG 887

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--F 714
               +  +   ++  + V +S   + + ++  F        +  + + +    G F+L   
Sbjct: 888  GQFENQQRAQKRLAIVVPVSLGLIALLLYFAFS-SVGQALLILVNVPLAVIGGVFSLWIS 946

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ +    +TL G +V + VV+ + +    +     +S    + +     L   + 
Sbjct: 947  GQYLSVPSSVGFITLFGVAVLNGVVMVESIN---QRIQDGLSVDAAVFEGAVSRLRPVLM 1003

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T++ + + ++PM +    G  +    A  +  G+V A   ++F+   +      
Sbjct: 1004 TAITSALGLIPMLLSTGVGAEIQKPLASVIVGGLVTATFLTLFVLPALFTRFSR 1057



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/319 (10%), Positives = 94/319 (29%), Gaps = 26/319 (8%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +            L     +         + +  +A   +   + +  +
Sbjct: 222 WYMGRGQEQLVIRGMGWLGNGEQGLEQIRQVPVKTSDGITVTVDDVAQVGLGTEIRQGAV 281

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
              +  +       GE    + L+    ++ A    +E   ++I + +P           
Sbjct: 282 TMTRKDEDGQVEQLGEVVSGIVLKRMGANTKATIDGIEARIERINQALPSGVRFEPYYNQ 341

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE 717
             +  + +      ++++ + + I + +           + ++ + I   L   A FG+ 
Sbjct: 342 ADLVTKAVETVTNALLLAFVFIAIVLALFLMNLRATTLVLLSIPISIGIALMIMAWFGLS 401

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRM--------------RKNMKLYTT--------SI 755
            NL ++  +   IG  V+  VV+ + M              R  +               
Sbjct: 402 ANLMSLGGIAVAIGMLVDGSVVMVENMFKHLTHPDAEHDAHRDELIENDPDPLDASHDDH 461

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSS 812
                + ++  E      + +    +  +P+  + G    +    AI +   IV A   +
Sbjct: 462 GIALRLQEAGREVARPIFFATAIILVVFMPLFSFEGVEAKLFQPMAISIMLAIVSAVIVA 521

Query: 813 IFIAAPILLFIYDWRAKNA 831
           + +   +  F++    +  
Sbjct: 522 LIVVPALASFVFRKGIRER 540


>gi|228470035|ref|ZP_04054946.1| acriflavin resistance protein [Porphyromonas uenonis 60-3]
 gi|228308309|gb|EEK17158.1| acriflavin resistance protein [Porphyromonas uenonis 60-3]
          Length = 1035

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 68/694 (9%), Positives = 191/694 (27%), Gaps = 51/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   ++ +L+ ++  +G L            +  P   P               ++    
Sbjct: 9   QRPIYVTVLFILLTVLGYLS-----FKSLSAELMPKFTPPLL---------NVQIIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   L   ++E+ S ++          +  + I +SF      +    +    L  
Sbjct: 55  SPSEVENSLTQKAEEVLSSMEGIDQMQSYSFEGMSMIMVSFDFGTDIDKAMTEAQNRLAA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  +     +   +  E  I++      +    + E    + ++ + ++   +   
Sbjct: 115 KRAELPREVFAPRISKVSVDEKPILIL---SARADIGSTELYDLVDKRIVPELSHIKGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    D  R+++   T   +       N             + +     
Sbjct: 172 NVDLVGGVEREIQINLDKGRMQEFGITPMMVQGAIRASNLDFPTGYLQSDETQMAVRLSG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E+                      I    +            +   +   +   
Sbjct: 232 KITSIEEL--------------------RQIILRNVSGAPIRLEDVAEVVDGVKDPVKMG 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +            ++  +     E     +  +    +       V +        + S
Sbjct: 272 RVNGQEAILLNILKQSDANALQVSEAVGKQIKKLEEQYAPEGLKVEVAQDTTTFTRNAIS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +V+ + +   +  L+    + +++I +   + + G TL + S+  +
Sbjct: 332 SVLTDLFLAILLVSLVILLFLHNVRNALIVMVVVPVSLISSFIGMRIFGFTLNMMSLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IG+ VD  I+V E +       ++   +     S    T+    +  ++  + + F 
Sbjct: 392 SLVIGVLVDDAIVVIENVYRHMEMGKNRVRATWDALSEIGLTVISVTLVLVVVFLPIIFT 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR----------YKKMKSIDINP 527
                  +R F   + ++IL S+  A+++V  +   +             + + S +   
Sbjct: 452 NSLVSDILRQFCAVIVIAILFSLLAALTLVPLLTSRLGNIQPLRSDRPLGRMLTSFERGI 511

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 I                 +  L +   +             +    +  +    
Sbjct: 512 SRFAEGISSLTRWGLSHRWALAGIVVALMAAVLVLFPLGFINFEFQPYMDRQECIIQLEM 571

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P D+S+  SN    +      Q  + EK   +          ++               P
Sbjct: 572 PKDISMAESNQLVRKAETWLMQRPEVEKVVTMVGLTSDNSQSSKGTPYLAELDVKLRKTP 631

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             T      +   ++  L+   +    +S    +
Sbjct: 632 EGTEAYVARIRKPLTDYLVDARVNVYSVSMTGTV 665



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/166 (12%), Positives = 68/166 (40%), Gaps = 7/166 (4%)

Query: 671  VGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
              +++S + + L  + +   W   L  +  + L I   L   A+     ++ A+  ++ L
Sbjct: 862  TAILLSLLFIYLALVLLYNNWTDPLVVMVAIPLSIVGALLALAMSNTAMSIYAMLGMVML 921

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
            +G    + +++ D   +        +S  + + +++       + T+++  I +LP+A+ 
Sbjct: 922  VGLVAKNAILLVDFANE---ARGEGLSVDEALIQAVKLRTRPILMTALSTIIGMLPVALS 978

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  +    A  +  G+ ++   ++ +   +    +  +  + +
Sbjct: 979  RGSGAELRTGMAWVIIGGMALSTLLTLIVVPALYKAFHARQRTSVK 1024



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 83/246 (33%), Gaps = 11/246 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +    E +       +         + L           +V E V K+I ++      + 
Sbjct: 254 LEDVAEVVDGVKDPVKMGRVNGQEAILLNILKQSDANALQVSEAVGKQIKKLEEQYAPEG 313

Query: 654 TEIVGPKISRELIRKGIVGVIISAIA-----MLIYIWIRFKWYFALGAITTLILDITKTL 708
            ++   + +    R  I  V+           L+ +        AL  +  + + +  + 
Sbjct: 314 LKVEVAQDTTTFTRNAISSVLTDLFLAILLVSLVILLFLHNVRNALIVMVVVPVSLISSF 373

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               +FG   N+ ++ A+  +IG  V+D +VV + +    +      +       +++E 
Sbjct: 374 IGMRIFGFTLNMMSLLALSLVIGVLVDDAIVVIENV---YRHMEMGKNRVRATWDALSEI 430

Query: 769 LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               +  ++   +  LP+         ++  F   +   I+ +  +++ +   +   + +
Sbjct: 431 GLTVISVTLVLVVVFLPIIFTNSLVSDILRQFCAVIVIAILFSLLAALTLVPLLTSRLGN 490

Query: 826 WRAKNA 831
            +   +
Sbjct: 491 IQPLRS 496


>gi|323958333|gb|EGB54039.1| CzcA family protein heavy metal efflux pump protein [Escherichia
           coli H263]
          Length = 1047

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPESVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|284034922|ref|YP_003384853.1| MMPL domain-containing protein [Kribbella flavida DSM 17836]
 gi|283814215|gb|ADB36054.1| MMPL domain protein [Kribbella flavida DSM 17836]
          Length = 716

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 74/501 (14%), Positives = 164/501 (32%), Gaps = 51/501 (10%)

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA---VDS 430
           L++L  +        +   +    V  TL LL L     T+P     V+ +      +D 
Sbjct: 198 LVILVFLFGSLLAASLPLLTAVFAVGSTLGLLVLASHVFTVPDYTAPVMMLVGLGVGIDY 257

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +L+  R R E ++      +  +    A  ++  +  T +IA + L   G GA++G A+
Sbjct: 258 ALLIFSRYRGELQRGADRTQAAQIALDTAGRSVLFAGCTVVIALLGLLALGLGALQGVAL 317

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGV 550
            + L++L++M  A++++ A++    R  +   +     +R         +  +  R    
Sbjct: 318 GVTLTVLMTMLAAVTLLPALLALFGRRIERSVLKHAAKARRTPGDGWRKLAGLVQRRPWT 377

Query: 551 GISILFSICSICLLFTHGLNYGIDFKGG------------------------IQLGVLAN 586
            + +     +   L    L  G    G                           + V   
Sbjct: 378 PLVLGVLALAALCLPALDLRLGFADAGTDDPAKTSRKAYDLLAQGFGPGFNGPLIVVSEG 437

Query: 587 RPVDLSVVRSNLESLQIG---DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             V    +   L S         +    DG+   +V          A ++++E ++    
Sbjct: 438 NQVAADTLNRKLASEPGIAAVTPARMTADGQVATMVVFPDSAPQDEATSKLVERLRDSTL 497

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVG-------VIISAIAMLIYIWIRFKWYFALGA 696
             V   T     + G   + +     +         V++   A+L+ +  R      + A
Sbjct: 498 PAVAAETKATYLVGGATAAADDFAAAVSSRLPIFVLVVVGLSALLLLVVFR-SVLIPIKA 556

Query: 697 ITTLILDITKTLGFF------ALFGIEFNLT----AVAAVLTLIGYSVNDKVVVYDRMRK 746
               +L I  +LG          FG +         V     + G S++ +V +  R+ +
Sbjct: 557 AVLNLLSIGASLGVITLVFQEGWFGAQPGPIEAFVPVMIFAIVFGLSMDYEVFLISRIHE 616

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
             +    +      + + +  T       +    +      +    ++  F + +A  ++
Sbjct: 617 EWR---RTGDPVLAVREGLATTGSVITAAAAIMIVVFGAFLLSPDRMLQQFGLGLATAVL 673

Query: 807 VAASSSIFIAAPILLFIYDWR 827
           V A     +  P +L +   R
Sbjct: 674 VDALLIRCVIVPAVLRLLGTR 694


>gi|254505612|ref|ZP_05117758.1| heavy metal efflux pump, CzcA family [Vibrio parahaemolyticus 16]
 gi|219551265|gb|EED28244.1| heavy metal efflux pump, CzcA family [Vibrio parahaemolyticus 16]
          Length = 1039

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/632 (11%), Positives = 165/632 (26%), Gaps = 40/632 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N +LV+L +    +G L ++ N    + +D  P       I                  
Sbjct: 11  SNRFLVLLATFAIVLGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL    K  L    T                     +           ++       +
Sbjct: 118 APKLPPSAKPTLGPDATGVGWVYSYV-LQDKTGQHDLAQLRSLQDWFLKYELQTVAGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYDLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +     G         D    P         
Sbjct: 237 LSSIEDIE------------------SLPLKVTSKGTPLLLGDIADINLGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I       A L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIHNVKTKLAELQRSLPDGVEIVATYDRSTLIDAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V +V  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAVVCALFLFHIRSSLVIALSLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR   +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGNVLPEHKNPVNKGLVALY 518

Query: 536 DCIAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             +    +R  +   +    L +                  +G +         + +   
Sbjct: 519 RPLLNLSLRFPKTMILLAVALMASAYYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
           R  L+       +    +     + R +    
Sbjct: 579 RELLQQTNKLIKTVPEVETVWGKIGRAETATD 610



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/225 (14%), Positives = 74/225 (32%), Gaps = 16/225 (7%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++  ++  D               +     D    + V+E  +    ++   +    T 
Sbjct: 792  ADVADIRYEDGPPMIKTENARPNGWVFVDIDDRDLGSYVVEAQQTVAEQLQLPAGYSLTW 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFAL 713
                +       +  V V I+   +++ ++  F+       I  L L +    G      
Sbjct: 852  SGQYEYMERAKERLSVVVPITIAIIMLLLYFSFR-RVGEVMIIMLTLPLAMVGGLWLMHY 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVV---------YDRMR-KNMKLYTTSISFRDLIDK 763
             G  F++      + L G +V   V++         Y ++  +  +   T+    D I +
Sbjct: 911  LGYNFSIAVGVGFIALAGVAVEIGVIMLVYLNQAWHYKKLHAEEEQKALTAKDLTDAIRE 970

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                 +   + T +   I ++P+      G  V+   A PM  G+
Sbjct: 971  GAGLRVRPVMMTVLTVIIGLIPIMYGDGTGSEVMQRIAAPMIGGM 1015



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 72/217 (33%), Gaps = 13/217 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D+++       +   +   +   G                 +T++ E+ +     + 
Sbjct: 261 DIADINLGPQMRRGISEFNGEGEAVGGVIVMRFGENASEVIHNVKTKLAELQRSLPDGVE 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            ++T   + ++   +     +     ++++ +  L      F    +L    +L + I  
Sbjct: 321 IVATYDRSTLIDAAVENLWKKLAEEFIVVAVVCAL----FLFHIRSSLVIALSLPVGILS 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LI 761
                   GI  N+ ++  +   IG  V+  +V+     +N+  +       D     +I
Sbjct: 377 AFIVMHWQGINANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVI 432

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            K+  E      ++ +   +S +P+    G     F+
Sbjct: 433 GKAAEEVGAPLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|16077739|ref|NP_388553.1| transporter involved in surfactin self-resistance [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|2632985|emb|CAB12491.1| transporter involved in surfactin self-resistance [Bacillus
           subtilis subsp. subtilis str. 168]
          Length = 1065

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 66/567 (11%), Positives = 160/567 (28%), Gaps = 37/567 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + V L ++I     L A  N   +S+ D     +                       
Sbjct: 23  KNKFAVWLMTIIVTAAGLYAGMNMKQESIPDVNMPYLT-------------ISTTYPGAT 69

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    L    +   +  +  + + + +   +  +    +    L+ V
Sbjct: 70  PSQVADEVTKPVEQAVQNLDGVSVVTSTSYENASSVMIEYDYEKDMDKAKTEAAEALENV 129

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N  L  D K   +   +     I+    + D    +  E + ++    + ++   E    
Sbjct: 130 N--LPDDAKDPEISRYSLNSFPILTLSVSSD--KDNLQELTKQVEDSLVSKLEGIEGVAS 185

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S + + ++       +L++       +       + +    ++       S      
Sbjct: 186 VQVSGQQVEEVEFSFKEDKLKEYGLDEDTVKQVIQGSDVTTPLGLYTFGNEEKSVVVSGD 245

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD-------------- 288
           +E   ++  + +  A+A+    +          +                          
Sbjct: 246 IETIKDLKNMRIPTASASSAGSSAASQAGAQSAQAAQSAQAAAQVQQSASTAVPTVKLSD 305

Query: 289 -NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
               K +                         +     +                     
Sbjct: 306 IATIKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADDVKAE-LKKFKEDHKGFNYSA 364

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                     S           A   ++++ + +   K  L++  SI L++++ L +L  
Sbjct: 365 TLDMAEPITQSVDTMLSKAIFGAIFAIVIILLFLRDIKSTLISVVSIPLSLLIALLVLQQ 424

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTIF 464
           L  TL + ++  + + IG  VD +I+V E I    R           +       +  I 
Sbjct: 425 LDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKALVREATKEMFKPIM 484

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            S I  +   + L   GG     F I   L+I+ ++  ++ I   ++  +      KS+ 
Sbjct: 485 SSTIVTIAVFLPLALVGGQIGELF-IPFALTIVFALAASLVISITLVPMLAHSLFKKSLT 543

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVG 551
             P+      P  +A  + +   W + 
Sbjct: 544 GAPIKAKEHKPGRLANIYKKVLNWALS 570



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 92/236 (38%), Gaps = 3/236 (1%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + ++ ++  +   +    +   +  ++    ++V     ++   KK  E         T
Sbjct: 306 IATIKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADDVKAELKKFKEDHKGFNYSAT 365

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +   I++ +       +  +  A++I +         L ++ ++ L +   L      
Sbjct: 366 LDMAEPITQSVDTMLSKAIFGAIFAIVIILLFLRDIKSTLISVVSIPLSLLIALLVLQQL 425

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  V+D +VV + + + M+L    +  + L+ ++  E     + 
Sbjct: 426 DITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKALVREATKEMFKPIMS 485

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +++      LP+A+ GG +      FA+ + F +  +   SI +   +   ++   
Sbjct: 486 STIVTIAVFLPLALVGGQIGELFIPFALTIVFALAASLVISITLVPMLAHSLFKKS 541



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 95/261 (36%), Gaps = 8/261 (3%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +K    L            V+    +      +          +         S   T V
Sbjct: 802  YKSVKDLENKKITSATGQEVKIGDVAKVKEGSTSDTVSKRDGKVYADVTGEVTSDNVTAV 861

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
               ++KKI ++     +            +   K  + ++ +   + + + I F    A 
Sbjct: 862  SAAIQKKIDKLDHPDNVSIDTGGVSADIADSFTKLGLAMLAAIAIVYLVLVITFGGALAP 921

Query: 695  GAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             AI  +L   +   L    + G   +L A+  +L LIG  V + +V+ DR+   +     
Sbjct: 922  FAILFSLPFTVIGALVGLYVSGETISLNAMIGMLMLIGIVVTNAIVLIDRV---IHKEAE 978

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAA 809
             +S R+ + ++ +  L   + T++A   +++P+A+    G  VI     + +  G++ + 
Sbjct: 979  GLSTREALLEAGSTRLRPILMTAIATIGALIPLALGFEGGSQVISKGLGVTVIGGLISST 1038

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
              ++ I   +   +  +R K 
Sbjct: 1039 LLTLLIVPIVYEVLAKFRKKK 1059


>gi|295699188|ref|YP_003607081.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
 gi|295438401|gb|ADG17570.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
          Length = 1091

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/632 (10%), Positives = 164/632 (25%), Gaps = 41/632 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  +I       A P  L  + +D  P                        
Sbjct: 8   LKRPYTFIVMAILIVL-----ATPFVLFTTPVDVLPEINIPVV---------SIIWTYTG 53

Query: 61  DEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              + +   +   ++  L + +                + +    +   +    +     
Sbjct: 54  LSAEDMATRITSVNERSLTTTVNDIEHIESQSLPGIAILKVFLQPNANIQTAIAQTVAVE 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q    ++       L+++ +   I ++    +  ++     + +   +     Q+     
Sbjct: 114 QAQLKQMPPGATAPLVISYSASSIPVIQLGLSSPKLSEQ--DLNDTALNFLRPQLVTIPG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +  + D   +     T A +       N         +     +   
Sbjct: 172 AAVPYPYGGKSRLISVDLDTRAMLAKGLTPADVVNAFNAQNLILPTGTAKIGPKEYTIDM 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                    +                     DI    +     +     ++    +   +
Sbjct: 232 NGSPPTLEGL--------------------NDIPVRTVNGATTYLREVAHVRDGYSPQTN 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                               S    ++T   L    RA   P                + 
Sbjct: 272 IVRQNGHRGVLMSVLKNGNASTLSIVDTLKGLLPAARAALPPDLQITALFDQSVFVKAAV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   + A L   ++ + +   +   +   SI L+++ +L +L  LG T+ + ++ G
Sbjct: 332 QGVVREALVAAALTAAMILLFLGNWRSTCIIAISIPLSILSSLIVLHALGQTINIMTLGG 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   +  E I        ++  ++  G          S +   I  V +FF
Sbjct: 392 LALAVGILVDDATVTIENIERHLHMGTNLHDAILDGAGEIAVPALVSTLCICIVFVPMFF 451

Query: 480 FGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G         A  +  ++L S   + ++V  + + ++ +         P   F  +  
Sbjct: 452 LTGVARYLFVPLAEAVVFAMLASYILSRTLVPTLAMLLMGHAHKPKTGTKPNL-FMRLYH 510

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                F R R   + I     +              +       LG      VD   +R 
Sbjct: 511 RFDAGFERMRAAYIMILSSLLVRRKMFGTLFLGFCVLSMGLFFALGEDFFPSVDAGDIRL 570

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           ++ +     I       ++   V  +  P   
Sbjct: 571 HMRAPTGTRIEETARLADEVEKVIREVVPEKE 602



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 65/165 (39%), Gaps = 9/165 (5%)

Query: 671  VGVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +G+ ++   +L+Y+ I      W   L  ++ L   +   +    L G   ++ A+   +
Sbjct: 883  LGIGVAMAIVLVYLLIVVNFQSWVDPLIIVSALPAALAGIVWMLFLTGTHLSVPALTGAI 942

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              +G +  + +++    R   +  +          ++    +   + T+ A  I ++PMA
Sbjct: 943  MTMGVATANSILMVAFAR---QRLSAGAPPLTAALEAGASRIRPVLMTAFAMIIGMVPMA 999

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +    G          +  G++ A  S++F    +   I+ W A+
Sbjct: 1000 LGLGEGAEQNAPLGRAVIGGLLFATVSTLFFVPLVFAGIHSWLAR 1044



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +     W        ++ L I  +L      G   N+  +  +   +G  V+D  V  
Sbjct: 348 MILLFLGNWRSTCIIAISIPLSILSSLIVLHALGQTINIMTLGGLALAVGILVDDATVTI 407

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           + +    +      +  D I     E    ++ +++   I  +PM    G     F +P+
Sbjct: 408 ENI---ERHLHMGTNLHDAILDGAGEIAVPALVSTLCICIVFVPMFFLTGVARYLF-VPL 463

Query: 802 AFGIVVAASSSIFIAAPILLFI 823
           A  +V A  +S  ++  ++  +
Sbjct: 464 AEAVVFAMLASYILSRTLVPTL 485


>gi|262199503|ref|YP_003270712.1| acriflavin resistance protein [Haliangium ochraceum DSM 14365]
 gi|262082850|gb|ACY18819.1| acriflavin resistance protein [Haliangium ochraceum DSM 14365]
          Length = 1064

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 61/574 (10%), Positives = 159/574 (27%), Gaps = 47/574 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +   ++   G L           +   P                  ++ +    
Sbjct: 12  RPVSVSVGVILVVLFGALTI-----SGIPIQLTPDVTVP-------------YVTVRTTW 53

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  ++       ++    L          ++    I L        +    +V+  
Sbjct: 54  PGATPAEVEAEILIEQEDALKSLPGLVRMTSQAQRGTGSIELELEVGASLDEALVRVSNL 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L  V  +     ++ ++ T+      + +     D       E    +    + Q+    
Sbjct: 114 LSQV-PEYPRTARQPVVSTSNTTGSPLAVMIIRSDPPGRAVAEYRTWVEEVILPQLERIR 172

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                        ++  + DP+ L     T +++        +        +   R    
Sbjct: 173 GVASIRLIGGRDTEVHVDFDPTALAARGVTVSQIRSALGAELSDVSAGDIPIGKRRYVVR 232

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            Q   +   ++                      +   +             +   +    
Sbjct: 233 TQVTPDVPEKL-------------------ARTVLRTDDNGAVVTLGDVAEVRVGMRKPD 273

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA--GSLPIKLNIVEERNVGADL 356
                        +   ++  +             +L+    +       V    +G   
Sbjct: 274 AVAFNNGAPSMALLAYQESGSNVLEVTREIYDEVELLQRDFMAPEGLELRVISDQIGYIG 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
           G+  + +    + A L + VL + +      +V   SI L+ + T+ ++SLLG  + + S
Sbjct: 334 GALDLVRNNLLVGAALAIGVLLLFLRSVGASMVVAVSIPLSTVGTVLIMSLLGRAVNIVS 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +AG+   IG+ VD++I+V E I     +   +  +   G    +  IF S  T     + 
Sbjct: 394 LAGMAFAIGMVVDNSIVVLENIDTWRGRVSDMGQAALSGAREVWGAIFASTCTTAAVFLP 453

Query: 477 LFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +  +    G  +R  A+ +  ++ +S+  ++ ++ +    ++R +K +  +         
Sbjct: 454 IVAWQDELGELLRDVALAISTAVFVSLLVSVVVIPSFAARVLRARKREDAEAAGEGEGGE 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTH 567
                A             S       +  L   
Sbjct: 514 AAKQSASDDAALAAPSEIDSAALPYRRVGSLVHW 547



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 93/265 (35%), Gaps = 22/265 (8%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A   +    +   +E+L    I            V          A  RV + +   ++
Sbjct: 802  PAGSVIPAGEIADLVETLGPTVIQRIERRRAITLQVSPPEDVPFETAIARVRDELVPSLS 861

Query: 644  EIVPLSTIQNTEIVGPKIS-RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                +         G      E   + +  ++++ I   + +   F+ + A  AI  + +
Sbjct: 862  AEGAIPGDIRLVFGGSAGKLDEAKTRFLEVLLLAVIITFLLLAALFEDFLAPVAIL-VTV 920

Query: 703  DITKTLGFF------ALFGIE-FNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLY 751
             +    G        AL G +  ++  +   + LIG  VN+ +++ D    RMR+     
Sbjct: 921  PLAGAGGVIGLRIVDALLGPQALDMLTMTGFVILIGVVVNNAILIVDGSLSRMREQA--- 977

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +S    +  ++   +   + ++  +   +LP+ ++   G  +       +  G+  +
Sbjct: 978  ---LSLEQAVTDAVRGRVRPILMSATTSLAGLLPLVLFPGSGSELYRGVGSIVLGGLAFS 1034

Query: 809  ASSSIFIAAPILLFIYDWRAKNARI 833
               S+F+   +   ++  R   AR+
Sbjct: 1035 TFLSLFLVPAVFTSLWRMRFAVARL 1059



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 80/265 (30%), Gaps = 17/265 (6%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I   + R+             +        + G     G    V          V  N  
Sbjct: 222 IPIGKRRYVVRTQVTPDVPEKLARTVLRTDDNGAVVTLGDVAEVRV-GMRKPDAVAFNNG 280

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +  +  +++Q                        V  + +  +        + + +I   
Sbjct: 281 APSMALLAYQESGSN--------VLEVTREIYDEVELLQRDFMAPEGLELRVISDQIGYI 332

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
             + +L+R  +  ++ +A+A+ + +        ++    ++ L    T+   +L G   N
Sbjct: 333 GGALDLVRNNL--LVGAALAIGVLLLFLRSVGASMVVAVSIPLSTVGTVLIMSLLGRAVN 390

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
           + ++A +   IG  V++ +VV + +                      E  G    ++   
Sbjct: 391 IVSLAGMAFAIGMVVDNSIVVLENI---DTWRGRVSDMGQAALSGAREVWGAIFASTCTT 447

Query: 780 FISVLPMAVWG---GSVIGSFAIPM 801
               LP+  W    G ++   A+ +
Sbjct: 448 AAVFLPIVAWQDELGELLRDVALAI 472


>gi|170682450|ref|YP_001742691.1| cation efflux system protein cusA [Escherichia coli SMS-3-5]
 gi|218557515|ref|YP_002390428.1| copper/silver efflux system, membrane component [Escherichia coli
           S88]
 gi|218688401|ref|YP_002396613.1| copper/silver efflux system, membrane component [Escherichia coli
           ED1a]
 gi|237707455|ref|ZP_04537936.1| cation efflux system protein cusA [Escherichia sp. 3_2_53FAA]
 gi|300990243|ref|ZP_07179159.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 45-1]
 gi|301049759|ref|ZP_07196703.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 185-1]
 gi|170520168|gb|ACB18346.1| cation efflux system protein cusA [Escherichia coli SMS-3-5]
 gi|218364284|emb|CAR01955.1| copper/silver efflux system, membrane component [Escherichia coli
           S88]
 gi|218425965|emb|CAR06776.1| copper/silver efflux system, membrane component [Escherichia coli
           ED1a]
 gi|222032335|emb|CAP75074.1| Cation efflux system protein cusA [Escherichia coli LF82]
 gi|226898665|gb|EEH84924.1| cation efflux system protein cusA [Escherichia sp. 3_2_53FAA]
 gi|300298491|gb|EFJ54876.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 185-1]
 gi|300407131|gb|EFJ90669.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 45-1]
 gi|312945120|gb|ADR25947.1| copper/silver efflux system, membrane component [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315287001|gb|EFU46416.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 110-3]
 gi|315291384|gb|EFU50744.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 153-1]
 gi|320194240|gb|EFW68872.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Escherichia coli WV_060327]
 gi|323952847|gb|EGB48715.1| CzcA family protein heavy metal efflux pump protein [Escherichia
           coli H252]
          Length = 1047

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|85711068|ref|ZP_01042128.1| Metal efflux system membrane component (silver efflux pump related)
           [Idiomarina baltica OS145]
 gi|85694981|gb|EAQ32919.1| Metal efflux system membrane component (silver efflux pump related)
           [Idiomarina baltica OS145]
          Length = 1065

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 87/690 (12%), Positives = 195/690 (28%), Gaps = 57/690 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF---- 65
           L  ++    + IA    +P+  LD FP                   + +  +        
Sbjct: 14  LLLVLALFSISIASFFIIPKLNLDAFPDVTN-------------VQVTVNTEAPGLAATE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +    + +   L          +   + IT+ F +S         V   LQ     
Sbjct: 61  VEQLITYPIESVMYALPDVKEVRSISKTGLSGITVVFDESVDIYFARQLVFERLQAAKEL 120

Query: 126 LNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +        +   ++                   ++E            +   E   + L
Sbjct: 121 IPEGVGTPEMGPNSSGLGQVYQYLLLAEPGSGVSSMELRSLNDYVVKLLLMPVEGITEVL 180

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                + Q     +P++L     T   +                G  ++        +  
Sbjct: 181 SFGGEVKQYQVNLNPAKLLSYDLTQQDVMSAVNKN-----NGNVGGWYMPRGQEQLVIRG 235

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
                SG            KT   V              E+ +  +   ++  +DG V  
Sbjct: 236 TGWLESGKKGLQQIRQIPLKTVDGVSVTLGQVADVEIGSEIRQGAV--SMSRKVDGEVNQ 293

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
              +   I   +   +   TI+       +++                     + S    
Sbjct: 294 LGEVVSGIVLKRKGSNTKATIDGIKKRIPLIQQALPEGVTFEPYYDQADLIQKAVSTVAY 353

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           +  I    ++ VL + +L  +   +   SI +++ + L ++S +G +  L S+ GI + I
Sbjct: 354 SLLIAFVFIIAVLALFLLNIRATFLVLLSIPVSIAIALMVMSAMGMSANLMSLGGIAVAI 413

Query: 425 GLAVDSNILVNERIREENRKNQSVFC--------------------------SLDMGFSR 458
           G+ VD ++++ E I +   +  S                              +    + 
Sbjct: 414 GMLVDGSVVMVENIFKHLSRPDSEHQDDAEQRTEHRDPDPQAAKLDSHGIKLRVKEAANE 473

Query: 459 AYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
               +F + +  L+  + LF F G         AI++ L+I+ ++F AI +V A+  +  
Sbjct: 474 VARPVFFAAMIILVVFMPLFSFQGVEAKLFEPMAISIMLAIISAVFVAIMVVPALASYFF 533

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
                   +             +++     +       +LF    + +            
Sbjct: 534 SRGIKPRENKLLKPLDNGYKRLLSVALRSKKAVITLAGVLFVGALVLVPRLGTEFAPELE 593

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G I + V        S + + LE     +    +F      L R+         +    
Sbjct: 594 EGTINIRVTL---APSSNLETALEVAPKLEKILMSFPETTYALSRIGRAEVGGDPEPISN 650

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISREL 665
             +   +      +T  +   +  K+  +L
Sbjct: 651 IELYVGLKPQSEWTTASDRYALQEKMEAKL 680



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 91/281 (32%), Gaps = 30/281 (10%)

Query: 581 LGVLANRPVDLS---VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           + V   +  D+     +R    S+        N  GE    + L+ +  ++ A    ++ 
Sbjct: 260 VSVTLGQVADVEIGSEIRQGAVSMSRKVDGEVNQLGEVVSGIVLKRKGSNTKATIDGIKK 319

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGA 696
               I + +P             + ++ +      ++I+ + ++  +             
Sbjct: 320 RIPLIQQALPEGVTFEPYYDQADLIQKAVSTVAYSLLIAFVFIIAVLALFLLNIRATFLV 379

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK---------- 746
           + ++ + I   L   +  G+  NL ++  +   IG  V+  VV+ + + K          
Sbjct: 380 LLSIPVSIAIALMVMSAMGMSANLMSLGGIAVAIGMLVDGSVVMVENIFKHLSRPDSEHQ 439

Query: 747 ---NMKLYTTSISFRDL----------IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
                +        +            + ++ NE      + +M   +  +P+  + G  
Sbjct: 440 DDAEQRTEHRDPDPQAAKLDSHGIKLRVKEAANEVARPVFFAAMIILVVFMPLFSFQGVE 499

Query: 794 IGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              F   AI +   I+ A   +I +   +  + +    K  
Sbjct: 500 AKLFEPMAISIMLAIISAVFVAIMVVPALASYFFSRGIKPR 540



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 84/239 (35%), Gaps = 9/239 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +  + I     Q    +    V +Q         + V ++ K    ++   +       
Sbjct: 828  EVAHVAIESGPPQIRRDDVQRRVVIQSNVQGRDMGSVVADIRKAIDEKVDLPTGYSVDIG 887

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-- 714
               +  +    +  + V IS   + + ++  F        +  + + +    G  AL+  
Sbjct: 888  GQFESQQRAQERLSIVVPISLALIALLLYFAFG-TMGQAMLILVNVPLAVIGGIVALYVS 946

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ +    +TL G +V + VV+ + +    +  T   +  D +       L   + 
Sbjct: 947  GQYLSVPSAVGFITLFGVAVLNGVVLVESIN---QRITDGHAVNDAVFDGAWSRLRPVLM 1003

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            T++ + + ++PM      G  +    A  +  G+V A   ++ I   +  +    + K+
Sbjct: 1004 TAITSALGLIPMLFATGAGAEIQRPLATVIVGGLVSATLLTLVILPVLYPWFSKQKIKD 1062


>gi|257452036|ref|ZP_05617335.1| acriflavin resistance protein B [Fusobacterium sp. 3_1_5R]
          Length = 1016

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/617 (11%), Positives = 167/617 (27%), Gaps = 43/617 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +  IG++  L            P+                        
Sbjct: 9   RRPVATSMIVISVIFIGIITMLNMRTELLPNMEIPTVT--------------IRSSWSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    + +   ++       +     + I + F      +    ++   +  
Sbjct: 55  VAEDVETQITKKIEAILPNVEGIDKIESTSSYGSSSIVVKFNFGTNADQKVTEIQREVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    +         S+ +             E +  +      +        
Sbjct: 115 ILNDLPKDASNPVAKKIQAGIGSLSMVVMMSAPNK---AELTTFVDEYLKPKFESLPGAA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         QL  + D  +L     +  ++                          N  
Sbjct: 172 QVDVYGNAAKQLQIQVDSEKLAAYNLSPVELYNLISSS-------------------NTV 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L    ++     L                 I                N+        +  
Sbjct: 213 LPIGTLQTGTKQLVVRYMGEMQSIEDFENMII--SSNGNTLRLKDISNVVLTREDESNKG 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            ++       +       S     E A      L+          +          S + 
Sbjct: 271 YISGKEAITILLQKSTDGSTVDLTEKANKALRELKGIMPKGTEYNIIMDTSVDIKSSITG 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L  IVLF+ +   +   +   ++ ++VI T A L   G TL L S+ G+ 
Sbjct: 331 VSSNALQGLILATIVLFVFLRNIRATFLITLALPISVIFTFAFLKATGTTLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +G+G+  D++++V + I     +  S    + + G +   ++IF S +T ++  + + F 
Sbjct: 391 IGVGMLTDNSVVVIDNIYRHITELHSPVLEASENGSTEVSASIFASALTTMLVFIPILFI 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R  A  +  S + ++  A++++  +   ++      S D     +       
Sbjct: 451 PGFAREIFRDMAYAIIFSNVAALIVALTLIPMLASKLMSNDVKISSDGKIFHKIREKYLK 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGVLANRPVDLSVVRS 596
           +    +  R   + I++   + SI +      N      +G   +       +DL     
Sbjct: 511 LISYALSHRKLTIFITLGIFVFSIFVSSFLKFNFMPKQDQGRYSITAELPNGLDLEKSDK 570

Query: 597 NLESLQIGDISFQNFDG 613
             + ++       N   
Sbjct: 571 IAKQIEAFVKEEPNTKT 587



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/219 (12%), Positives = 81/219 (36%), Gaps = 7/219 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        + +    V +   +   ++     I  +     +     + +    ++
Sbjct: 786  DRIYSVTISANDNGLGVRGVQQAFIEAFKKVNQSDAISYSWGGESENMNATMSQLSSALL 845

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I+   +   I  +F+ +      I ++ L +        + G   N+  +  ++ L G  
Sbjct: 846  IAIFLIYALIAAQFESFLLPFVVIGSIPLALIGVFLGLFILGQAMNMMTMIGIILLAGIV 905

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +V+ D +     +    +S  + I ++ +  L   + T+    + ++PMA+    G
Sbjct: 906  VNNAIVLIDFI---QLMRVRGMSRTEAIIEAGSTRLRPILMTTATTVLGMIPMALGFGEG 962

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              +    ++ + FG+ V+   ++ +   +   + D+  +
Sbjct: 963  SEIYKGMSLAVIFGLSVSTLLTLIVIPILYSLMDDFIMR 1001



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 31/358 (8%), Positives = 101/358 (28%), Gaps = 9/358 (2%)

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           I ++ +        +    T     L   F ++     + ++    K+++    +     
Sbjct: 135 IGSLSMVVMMSAPNKAELTTFVDEYLKPKFESLPGAAQVDVYGNAAKQLQIQVDSEKLAA 194

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           + +        + +    + I  L +     ++   G    I+    + +    N     
Sbjct: 195 YNLSPVELYNLISSSNTVLPIGTLQTGTKQLVVRYMGEMQSIEDFENMIISSNGNTLRLK 254

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            +    L      +  + +       L++            +  + +++    +   +  
Sbjct: 255 DISNVVLTREDESNKGYISGKEAITILLQKSTDGSTVDLTEKANKALRELKGIMPKGTEY 314

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    I   +       +    +A ++                 L + +  T  F 
Sbjct: 315 NIIMDTSVDIKSSITGVSSNALQGLILATIVLFVFLRNIRATFLITLALPISVIFTFAFL 374

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   NL ++  +   +G   ++ VVV D +     +        +  +    E    
Sbjct: 375 KATGTTLNLISLMGLSIGVGMLTDNSVVVIDNI--YRHITELHSPVLEASENGSTEVSAS 432

Query: 772 SVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +++   +  +P+    G    +    A      I+ +  +++ +A  ++  +   
Sbjct: 433 IFASALTTMLVFIPILFIPGFAREIFRDMAYA----IIFSNVAALIVALTLIPMLASK 486


>gi|290967877|ref|ZP_06559427.1| protein-export membrane protein SecD [Megasphaera genomosp. type_1
           str. 28L]
 gi|290782016|gb|EFD94594.1| protein-export membrane protein SecD [Megasphaera genomosp. type_1
           str. 28L]
          Length = 433

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 78/168 (46%), Gaps = 4/168 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP + ++   K      I  I ++I++   ++    + A   L++ +   LG      
Sbjct: 242 TIGPSLGQDSKMKSEKAFAIGIILIMIFLIAVYRI-AGIVANLALLVYVVILLGLLKYLD 300

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G++V+  +++++R ++ + +     S R  ++          +  
Sbjct: 301 ATLTLPGIAGIILSMGFAVDANILIFERFKEEVLI---GKSLRSSMEAGFKRAFSTILDA 357

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +++  I+ + + V G   +  FA+ +A GI+V+  ++I I+  +L + 
Sbjct: 358 NVSVMIAAIVLMVMGSGTVKGFAVNLALGIIVSMFTAIVISRSLLTWF 405



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 45/119 (37%), Gaps = 5/119 (4%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMP-KNRISLGLDLRGGSHLVLEVD--- 61
           ++ ++  +     L+      + Q  +  F    P  + I  GLDL+GG+H+VLE +   
Sbjct: 10  FVAVVIILAAFFTLVFPPTKSMRQGTVLPFAVVKPFPDSIKQGLDLQGGTHIVLEAEDSP 69

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
                   L+     +   + + G+    ++Q    +I +     +  E   + +    
Sbjct: 70  GAPVTEDSLKRAVSIIERRINEMGLTEPLVQQEGAKRIIVELPGEKNPEKAIETIGKTA 128


>gi|239996299|ref|ZP_04716823.1| RND family efflux transporter [Alteromonas macleodii ATCC 27126]
          Length = 1038

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/526 (11%), Positives = 151/526 (28%), Gaps = 52/526 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    +V+L  +I   G        L    +   P                   + +  +
Sbjct: 19  RRPVLIVVLNLLIAIAGFAA-----LSGLEVRELPDVDTP-------------QVTVTAE 60

Query: 62  EDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +        +   + +           +   ++ + F      E+ A++V  
Sbjct: 61  FPGASPETVDAEVTGRLEGAVARVSGVKDIYAQSEENSARVRVEFRPGVNLEDAANEVRE 120

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  +  +L  D ++  ++       ++V    + D +       +  +           
Sbjct: 121 SVSRIQRQLPEDVEQVSIIRADSDAQAVVSLAISSDTLDMET--LTERVDTDVAPLFLSI 178

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                 +        L    DP RL     + + ++    L                   
Sbjct: 179 PGVADVMLDGERERVLRVSVDPLRLTSFGLSMSDIANALSLAPFDVPAGSIQSAEQALIV 238

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                     ++  I ++G                                ++    A  
Sbjct: 239 RADATSVSAEDVGNIVVSGD------------------------IRINDVASVYFGPADT 274

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                L    +       +A  +     +    + A L      + + +    +      
Sbjct: 275 TSVVRLDGTPVIGVGVIRQASSNTIEISDEVLAMVADLDKRFTDMHIVVTS-DDAEFIRD 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      + ++   LV++ L + +   +  +V   SI +++   LA++  +G ++ + ++
Sbjct: 334 SVKEVVVSLSLTVALVVVTLLVFIGSWRATIVPALSIPVSLAGALAIIWGMGFSINILTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             +VL  G+ VD  I+V+E I+           +  +G    +  +  +        + +
Sbjct: 394 LALVLATGMIVDDAIVVSENIQRRRSMGLGARAAAVVGTREVFFAVVATTAVLASVFIPI 453

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            F     G   R F   +  +++IS F A+S+V A+   +   +  
Sbjct: 454 AFLPSTAGLLFREFGGVLAGAVIISSFVALSLVPALTARLKVKEAK 499



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 85/222 (38%), Gaps = 10/222 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            +   ++L+ +  + VA + V+E ++    E +P                   +  +  V+
Sbjct: 804  QRRAIKLEMELPEDVALSNVVENIRNLAAESLPNGIGLVFLGEAQTYEETSKQVALTYVL 863

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGY 732
             + + +L+ +  +F+   +   +  L +        +ALF  G   N+ +   ++ LIG 
Sbjct: 864  -AFVIVLLVLAAQFESVNS-AVVVMLTVPFGIAAAVYALFLTGTSINIYSQIGLVMLIGL 921

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ +      +L        D I ++    L   + T ++  +  LP+ +    
Sbjct: 922  LAKNAILLIEFA---DQLRDKGYDIYDAIVEAGRVRLRPIMMTLVSTILGGLPLILSTGA 978

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G     +    +  G+ +A   ++++   + L +  +    A
Sbjct: 979  GAEARNAIGWVVFGGLGIAVVFTLYLTPVLYLALARFTKPRA 1020



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 78/255 (30%), Gaps = 11/255 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V    +R N  +      +        +    +        +   +    +       
Sbjct: 252 NIVVSGDIRINDVASVYFGPADTTSVVRLDGTPVIGVGVIRQASSNTIEISDEVLAMVAD 311

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-----IRFKWYFALGAITTLI 701
                 +  IV      E IR  +  V++S    +  +          W   +    ++ 
Sbjct: 312 LDKRFTDMHIVVTSDDAEFIRDSVKEVVVSLSLTVALVVVTLLVFIGSWRATIVPALSIP 371

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +   L      G   N+  + A++   G  V+D +VV + +    +  +  +  R   
Sbjct: 372 VSLAGALAIIWGMGFSINILTLLALVLATGMIVDDAIVVSENI---QRRRSMGLGARAAA 428

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                E     V T+       +P+A      G +   F   +A  +++++  ++ +   
Sbjct: 429 VVGTREVFFAVVATTAVLASVFIPIAFLPSTAGLLFREFGGVLAGAVIISSFVALSLVPA 488

Query: 819 ILLFIYDWRAKNARI 833
           +   +    AK + +
Sbjct: 489 LTARLKVKEAKESGL 503


>gi|218528478|ref|YP_002419294.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
 gi|218520781|gb|ACK81366.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
          Length = 1031

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 72/526 (13%), Positives = 162/526 (30%), Gaps = 25/526 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
             +         +   +  + ++  + ++       ++ +  +  T+ F      +   +
Sbjct: 49  VTITQGGAAPSELQTQVTKWVEDSIAGVRGVKHITSAITEGASVTTVEFRLEVNTDRAVN 108

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  +   L     + ++       + I++       +       S  +  +    
Sbjct: 109 DVKDAVSKIRINLPRTIDEPVIQRVEITGLPILIYGVTSPAMTPA--GLSWFVEDKVART 166

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +          +  ++     P RL  L  T A ++    + +    G    V   
Sbjct: 167 LQGVKGVGGVERVGGVAREIRITPLPDRLLALGITAADVNKQVRVTSADLAGGRGEVGGR 226

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S           ++    +                       G R+        +   
Sbjct: 227 EQSIRTLAASRTIRDLKATSIVLP--------------------GGRKVRLDDLATVEDS 266

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +             +     S  +  S            A    G   I+     + +V 
Sbjct: 267 IEEPRTFARFNGESVVAFSVSRGSGASDAEVAAGVEKKIAEFAQGYPDIQF-QEIDSSVA 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A  GS +    T    A L +IV+F+ +   +  L+A  ++ L+V+ T   +  LG TL 
Sbjct: 326 ATRGSYASAMHTLMEGAALAVIVVFLFLRDWRATLIAAVALPLSVLPTFWAMDALGFTLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  I L  G+ VD  I+  E +    R  +S + +   G       +     T +  
Sbjct: 386 GISLLAITLVTGILVDDAIVEIENVVRHMRMGKSPYRASIEGADEIGLAVIAITATLIAV 445

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              + F GG A R F I  GL+I +S+F ++ + R +   +  Y  ++           +
Sbjct: 446 FAPVSFMGGIAGRYF-IQFGLTIAVSVFMSLLVARLITPLLAAY-FLRDHGHAEEREGPV 503

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           +     +     R   + + +  ++ +  ++ T  L  G   K   
Sbjct: 504 MRAYTRLVGWSVRHKWITLMVGLALFAGSIVSTKLLPSGFIPKQDN 549



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 74/249 (29%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +   R V L  + +  +S++      +            +            +E   
Sbjct: 246 SIVLPGGRKVRLDDLATVEDSIEEPRTFARFNGESVVAFSVSRGSGASDAEVAAGVEKKI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +  +  P    Q  +                 +  +A+A+++       W   L A   
Sbjct: 306 AEFAQGYPDIQFQEIDSSVAATRGSYASAMHTLMEGAALAVIVVFLFLRDWRATLIAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T       G   N  ++ A+  + G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSVLPTFWAMDALGFTLNGISLLAITLVTGILVDDAIVEIENV---VRHMRMGKSPYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIA 816
              +  +E     +  +        P++  GG        F + +A  + ++   +  I 
Sbjct: 423 ASIEGADEIGLAVIAITATLIAVFAPVSFMGGIAGRYFIQFGLTIAVSVFMSLLVARLIT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PLLAAYFLR 491



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 80/215 (37%), Gaps = 7/215 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V ++     S A   ++E      T       +   +    +I +E+    ++ +
Sbjct: 789  DRAVRVAVEANMEGSDALGSLIEQALATPTAKSLPPGVTIRQTGDAEIMQEVFSGFLMAM 848

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L I   +    +  +  ++  V  +L L+G 
Sbjct: 849  GAGIMMVYAVLVLLFGSFLQPLTILFSLPLSIGGAILGLLICHMPISMPVVIGLLMLMGL 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + M      +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAVEEMA---RGVDRVTAIVDAGRKRARPIVMTTIAMAAGMVPSAMALGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            GG      A+ +  G++V+   S+     + L + 
Sbjct: 966  GGEFRAPMAVAVIAGLIVSTLLSLVFVPAVFLLMD 1000


>gi|138896509|ref|YP_001126962.1| AcrB/AcrD/AcrF family transporter [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250864|ref|ZP_03149549.1| acriflavin resistance protein [Geobacillus sp. G11MC16]
 gi|134268022|gb|ABO68217.1| Transporter AcrB/AcrD/AcrF family [Geobacillus thermodenitrificans
           NG80-2]
 gi|196209593|gb|EDY04367.1| acriflavin resistance protein [Geobacillus sp. G11MC16]
          Length = 1060

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 84/711 (11%), Positives = 192/711 (27%), Gaps = 65/711 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN   + + ++I  +  L +  N      L+  P+                   V     
Sbjct: 10  NNKLAIWILTIIVAVAGLYSGMN----MKLETIPNINVPFI---------SVSTVYPGAT 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++    L    +   S  Q  + + + +   +  E   ++V   L  +
Sbjct: 57  PEEVAKKVTEPIEQRVEHLDGVTVVRSSSFQHASFVQIEYEFDKDMEKAQNEVKEALSHL 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    ++  +   +     ++    ++        E +  + R  + ++   +    
Sbjct: 117 K--LPDGAQEPDVSRISFSAFPVI--SLSVTNPDESLAELTETVERHVVPELEGIDGVDS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              + + + ++    D  +L+Q   T   +         S    ++       S      
Sbjct: 173 VEVAGQQMQEVNIRFDEQKLKQYGLTEQSVINVIQASAVSLPLGLYTFGDTEKSVVIDGR 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++  + +  A AN   ++     +        +              A       
Sbjct: 233 IVTVDDLKALRIPIAPANGAAQSPMAGGEGMGAAGQMQGIAAGQGAAAQMQGAASGQAGT 292

Query: 303 LTAPVINQAI-------------------------PSGKAQISGNFTIETAGILAAMLRA 337
             +                                   KAQ +   T+  A         
Sbjct: 293 SPSIPSVSLSDLAEVEVVAKAESISRTNGEPSIGVQIVKAQDANTVTVVNAVKEKIKDLE 352

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
                   I           S +         A   +IV+F+ +   +  L++  SI L+
Sbjct: 353 KRYDGLRIITVFDQGQPIEDSVNTMVDKAVFGALFAVIVIFLFLRNIRTTLISVVSIPLS 412

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ---SVFCSLDM 454
           +++ + LL  +  TL L ++  + + IG  +D +I+V E I           +    +  
Sbjct: 413 LLIAILLLYEMDITLNLMTLGAMTVAIGRVIDDSIVVVENIYRRMTLPDEPLTGKELIVS 472

Query: 455 GFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
                +  I  S I  +   + L       G     FA+T+  ++L S+  A+++V A+ 
Sbjct: 473 ATKEMFIPIASSTIVTVAVFLPLGLVKGMVGELFLPFALTIVFALLASLIVAVTVVPALA 532

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
            ++ R             +  L      +         +       +    L     +  
Sbjct: 533 HWLFRNGVAAKRVRAKERKSLLASWYKTVLRWSLDHKLIVSGAAVLLLVASLFLVPYVGV 592

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRS-----------------NLESLQIGDISFQNFDGE 614
                   ++ V    P     V                                   G+
Sbjct: 593 SFLPSDEQKMIVATYSPAPGQTVDQVERIAKEVEAFFEKRDGVKNIQLSVGGGNPMNPGQ 652

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            N  +       D        E V K + E       Q+ ++ G   S  +
Sbjct: 653 DNAALFYVEYDPDVKNFAEEKEKVMKALDERGDKGEWQSQDVSGTGTSNVI 703



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 84/219 (38%), Gaps = 7/219 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               +         +     V   V+K I ++   S +        +   E   +  + ++
Sbjct: 839  DGRVYASVSAEVKTKDVAAVSADVQKAIDKLRVPSNVDVHMGGVTEDIEEAFTQLGLAML 898

Query: 675  ISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             +   +   + + F         + +L   +   L    +     +++A+  +L LIG  
Sbjct: 899  AAVAIVYFVLVVTFGGGLAPFTILFSLPFTVIGALLALFIADETISISALIGMLMLIGIV 958

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--GG 791
            V + +V+ DR+   +      +S R+ + ++    L   + T++A   ++LP+A    GG
Sbjct: 959  VTNAIVLIDRV---IHKERDGLSTREALLEAAGTRLRPILMTAIATVGALLPLAFGMEGG 1015

Query: 792  SVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            ++I     + +  G+  +   ++ I   +   +  W+ K
Sbjct: 1016 ALISKGLGVTVIGGLTSSTLLTLIIVPIVYETLMKWKKK 1054



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/241 (13%), Positives = 89/241 (36%), Gaps = 3/241 (1%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + +E +   +   +        +  ++ Q  ++V     ++   K + +      I    
Sbjct: 305 AEVEVVAKAESISRTNGEPSIGVQIVKAQDANTVTVVNAVKEKIKDLEKRYDGLRIITVF 364

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
             G  I   +       V  +  A+++           L ++ ++ L +   +       
Sbjct: 365 DQGQPIEDSVNTMVDKAVFGALFAVIVIFLFLRNIRTTLISVVSIPLSLLIAILLLYEMD 424

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I  NL  + A+   IG  ++D +VV + + + M L    ++ ++LI  +  E       +
Sbjct: 425 ITLNLMTLGAMTVAIGRVIDDSIVVVENIYRRMTLPDEPLTGKELIVSATKEMFIPIASS 484

Query: 776 SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++      LP+ +     G +   FA+ + F ++ +   ++ +   +  +++       R
Sbjct: 485 TIVTVAVFLPLGLVKGMVGELFLPFALTIVFALLASLIVAVTVVPALAHWLFRNGVAAKR 544

Query: 833 I 833
           +
Sbjct: 545 V 545


>gi|110640805|ref|YP_668533.1| putative cation efflux system protein CusA [Escherichia coli 536]
 gi|191172285|ref|ZP_03033827.1| cation efflux system protein cusA [Escherichia coli F11]
 gi|300996919|ref|ZP_07181584.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 200-1]
 gi|110342397|gb|ABG68634.1| putative cation efflux system protein CusA [Escherichia coli 536]
 gi|190907384|gb|EDV66981.1| cation efflux system protein cusA [Escherichia coli F11]
 gi|300304374|gb|EFJ58894.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 200-1]
 gi|324010559|gb|EGB79778.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 60-1]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVSEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|315299092|gb|EFU58346.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 16-3]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 93/288 (32%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMR-----KNMKLYTTSIS---FRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R     + +     + S     + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPLLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|225875031|ref|YP_002756490.1| heavy metal efflux RND transporter CusA [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791566|gb|ACO31656.1| heavy metal efflux RND transporter CusA [Acidobacterium capsulatum
           ATCC 51196]
          Length = 1048

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/682 (9%), Positives = 167/682 (24%), Gaps = 49/682 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++ +  ++   G+       + Q  LD  P       I          H     +
Sbjct: 11  RNPFLVIAVTVLLAAAGIWS-----MRQVPLDALPDISDVQVI---------IHTQWPGE 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +                         + + + F D         +V  +LQ 
Sbjct: 57  PPNVIEDQVTYPIVSALLAAPHVKAVRAQTMFGDSYVFVVFKDGTNLYWARSRVIEYLQQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  +    +    T                                 Q+       
Sbjct: 117 IADSLPSNVHPTIGPDATGAGWVYEY-AIVDKSHNQSLASLRSLQDWYLRYQLETVPGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP +L     + + +                             
Sbjct: 176 EVASIGGFVRQYQVNLDPQKLFSYGISASTVIQRIR-------------------QSTNE 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +  D ++++G         +              + G              P        
Sbjct: 217 VGGDVLDLNGAEYMVRGLGYFKTLADLENIPVATKDGTPILVRNLGTVSFGPAPRRGAAD 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +    I+        +     P    +           S   
Sbjct: 277 WDGKGEVVGGIVIMRYGGNALKVIDGIKAKLHAIAPSLPPGVKIVTTYDRSWLIHKSIHT 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + A +V  V    + + +  L+   ++ + ++     +  L  +  + S+ G+ 
Sbjct: 337 LVRDLILEAIIVSFVSIAFLFHFRSALIPILTLPIALLAAFIPMYFLHISSNIMSLGGLA 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFC---SLDMGF-----SRAYSTIFDSNITALIA 473
           L +G+ VD+ I++ E       +         +           +    +F S +  +++
Sbjct: 397 LAVGVLVDAAIVMVENGYRHLAERTDPEQLNDAARKKMLVGAAQQVGPALFYSLLIIVVS 456

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + +F      G   R  A T  L+++ S   +I++V A+M F +R +     +      
Sbjct: 457 FLPVFLLSSQEGRMFRPLAWTKTLALVFSSVLSITLVPALMPFFLRGRLRSESENPLARM 516

Query: 531 FFLIPDCIAIQFMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              +   +    +R     +  S    +                 ++G       +   +
Sbjct: 517 TQALYLPVLRWSLRRWKLVLIFSLAFLAATVPLYFRLGSQFMPALYEGSALYMPSSLPGI 576

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L      ++     D   ++F    +    +      +      +      +       
Sbjct: 577 SLPQAIDLMQ---TQDRIIRSFPEVNSVFGTVGRSDSATDNAPLDMFDTTIMLKPRSQWP 633

Query: 650 TIQNTEIVGPKISRELIRKGIV 671
                + +   +   L   G+ 
Sbjct: 634 RGMTYDKLIAAMDARLQFPGVT 655



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 67/191 (35%), Gaps = 20/191 (10%)

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
              + ++   I   +    +  +I+S +++       F +  AL  I TL + +      
Sbjct: 324 YDRSWLIHKSIHTLVRDLILEAIIVSFVSI----AFLFHFRSALIPILTLPIALLAAFIP 379

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN---- 766
                I  N+ ++  +   +G  V+  +V+     +N   +    +  + ++ +      
Sbjct: 380 MYFLHISSNIMSLGGLALAVGVLVDAAIVMV----ENGYRHLAERTDPEQLNDAARKKML 435

Query: 767 -----ETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAP 818
                +      Y+ +   +S LP+ +       +    A      +V ++  SI +   
Sbjct: 436 VGAAQQVGPALFYSLLIIVVSFLPVFLLSSQEGRMFRPLAWTKTLALVFSSVLSITLVPA 495

Query: 819 ILLFIYDWRAK 829
           ++ F    R +
Sbjct: 496 LMPFFLRGRLR 506



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 82/277 (29%), Gaps = 12/277 (4%)

Query: 565  FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
            +             + +       + +  V     S     I  ++        + L   
Sbjct: 768  YQQSFRNDPAAIMRMLISTPMGAQIPIGEVARVYYSRGPSMIRDEDGSLTGYLYLTLNNS 827

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
               +        +  K                   +    L  + I+ ++   I +L+Y+
Sbjct: 828  DYGNYVTQVDRLLKNKLHLPAGYTWRWAGEYEFEVRAKHRL--EIILPIVFFVIFLLLYL 885

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
              R     A   I   +  ++  L    L G  F++      + L G +V   VV+   +
Sbjct: 886  VFR-SVVEAAVLIFPTLYALSGGLLLQWLLGFNFSVAVWVGYIALFGIAVETGVVMVIYL 944

Query: 745  RKNMKLY------TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIG 795
            ++    Y       T  S    + +   + L   + T  A  +S+ P+      G  V+ 
Sbjct: 945  QEAYDKYMAQETAMTDESLHAAVIEGAVQRLRPKLMTVTAVILSLAPILWESGIGSDVMK 1004

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              A P+  G++ +    + +     L I     +  R
Sbjct: 1005 PIAAPIVGGMITSTIHVLILVPVFFLLIKRREIRLQR 1041


>gi|294628933|ref|ZP_06707493.1| AcrB/AcrD/AcrF family transporter [Streptomyces sp. e14]
 gi|292832266|gb|EFF90615.1| AcrB/AcrD/AcrF family transporter [Streptomyces sp. e14]
          Length = 1048

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 67/516 (12%), Positives = 153/516 (29%), Gaps = 34/516 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  ++  + L+      +PQ      P+        L            +  
Sbjct: 20  RFSLAQRALIGLMSVVALVFGA-IAIPQLKQQLLPTIELPVVSVLAP---------YQGA 69

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    ++    +        +  +    IT SF      + +   V   +  
Sbjct: 70  SPDVVEKQVVEPLEDNLKAVDGITGVTSTASEGSAVITASFDYGNDTQQLVADVQQAVNR 129

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              KL  D    ++  +T+   ++VL+  +           + ++ +  + ++   +   
Sbjct: 130 ARPKLPDDVDPQVIAGSTDDIPTVVLAVTSGKDQQ----ALADQLDKTVVPELKNIDGVG 185

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q        +Q+    D  RL     T+A ++        +     F      D  G   
Sbjct: 186 QVTVDGVRDLQVTVTPDDRRLAAAGLTSAALAQALQAGGATVPAGSF------DEGGANR 239

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+    ++ +                       E   +         + +  A      
Sbjct: 240 TVQVGGGLTSLRQIRDLMVTGQ-----------GEAAKKPVRLGDVATVKQEPAEADSIT 288

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     S              LR                 A   S   
Sbjct: 289 RTDGRPSLAVAVTMDHDGSAVAISNAVEDKLPGLRKSLGGDAKITTVSDQGPAVAKSIDG 348

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A+     ++V+ + +   +  LV   SI L+V+L L +L     +L + ++  + 
Sbjct: 349 LTTEGALGLLFAVLVILVFLASVRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALT 408

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD +I+V E I+      +    ++          +  S +T +   + +   G
Sbjct: 409 IAIGRVVDDSIVVLENIKRHLGYGEERREAILAAVREVAGAVTSSTLTTVAVFLPIGLVG 468

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G        F++T+  ++L S+  ++++V  +  + 
Sbjct: 469 GMVGELFGPFSLTVTAALLASLLVSLTVVPVLSYWF 504



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 8/223 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                               V   ++ KI  +   +              +  +   + ++
Sbjct: 811  DGRRAATVTAKPTGDNTGAVSTKLQSKIKALKLPAGATAEIGGVTSDQNDAFKNLGLAML 870

Query: 675  ISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             +   + + +   F+     L  + ++    T  LG     G    + A+  +L LIG  
Sbjct: 871  AAIAIVFLLLVATFRSLAQPLILLVSIPFAATGALGLLIATGTPMGVPAMIGMLMLIGIV 930

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
            V + +V+ D + +  K         + + +     L   + T++A   ++LPMA+     
Sbjct: 931  VTNAIVLIDLINQYRKQ---GYGVVEAVLEGGRHRLRPILMTALATIFALLPMALGVTGE 987

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            GG +    A+ +  G+V +   ++ +   +   +   + + A+
Sbjct: 988  GGFIAQPLAVVVIGGLVTSTLLTLLLVPTLYAMLELRKERRAK 1030



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 66/173 (38%), Gaps = 9/173 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS---RELIRKGIVGVIISAIAMLIYIW 685
                V + +      +   + I      GP ++     L  +G +G++ + + +L+++ 
Sbjct: 310 AISNAVEDKLPGLRKSLGGDAKITTVSDQGPAVAKSIDGLTTEGALGLLFAVLVILVFLA 369

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L    ++ L +   L       +  N+  + A+   IG  V+D +VV + ++
Sbjct: 370 ---SVRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK 426

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              +        R+ I  ++ E  G    +++      LP+ + GG V   F 
Sbjct: 427 ---RHLGYGEERREAILAAVREVAGAVTSSTLTTVAVFLPIGLVGGMVGELFG 476


>gi|186471278|ref|YP_001862596.1| acriflavin resistance protein [Burkholderia phymatum STM815]
 gi|184197587|gb|ACC75550.1| acriflavin resistance protein [Burkholderia phymatum STM815]
          Length = 1078

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/636 (10%), Positives = 159/636 (25%), Gaps = 49/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  +I       A P  L  + +D  P                   ++   
Sbjct: 8   LKRPYTFIVMAILIVL-----ATPFVLFTTPVDVLPEINIPV-----------VSIIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           +        +      +        +                I L    +   +    + 
Sbjct: 50  NYAGLSAQDMANRITSVNERSLTTTVNDIEHIESQSLAGIAIIKLFLQPNANIQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    ++       L+++ +   I ++    +  ++     + +   +     Q+ 
Sbjct: 110 VAVEQAQLKQMPPGATPPLVISYSASSIPVIQLGLSSPRLSEQ--DLNDTALNFLRPQLV 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + D   L     T   +       N         +     
Sbjct: 168 TIPGAAVPYPYGGKSRLISVDLDTRALLAKGLTPLDVVNAVNAQNLILPTGTAKIGPREY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +            +                     DI    +     +     ++    +
Sbjct: 228 TVNMNGSPTTVAGL--------------------NDIPVRTVNGATTYLREVAHVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    + T   L    +A                  
Sbjct: 268 PQTNIVRENGRRGVLISILKTGSASTLSIVNTLRDLLPNAQAALPSDLKVTPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L   ++ + +   +   +   SI L+++ +L  L  LG T+ + 
Sbjct: 328 KAAIRGVVREAVIAAALTAAMILLFLGNWRSTCIIAISIPLSILTSLIALHALGQTINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHMGTNLHDAILDGAGEIAVPALVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + ++ +   K       + F 
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLMGHAH-KHDANARPNLFV 506

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +       F   R   + +     +              +       LG      VD  
Sbjct: 507 RLHRRFDASFETMRAAYIMVLSSLLVRRKLFGTLFLGFCVVSLALAAVLGEDFFPRVDAG 566

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P D 
Sbjct: 567 QIRLHMRAPTGTRIEETARLADQVERVVREVIPRDE 602



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 62/162 (38%), Gaps = 9/162 (5%)

Query: 671  VGVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +G+ ++   +L+Y+ I      W   L  ++ L   +   +    L G   ++ A+   +
Sbjct: 883  LGIGVAMAIVLVYLLIVVNFQSWIDPLIIVSALPAALAGIVWMLFLTGTHLSVPALTGAI 942

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              +G +  + +++    R   +  T          ++    +   + T+ A  I ++PMA
Sbjct: 943  MTMGVATANSILMVSFAR---QRLTAGAPPLTAALEAGASRIRPVLMTAFAMIIGMVPMA 999

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +    G          +  G++ A  S++F    +   I+  
Sbjct: 1000 LGLGEGAEQNAPLGRAVIGGLLFATLSTLFFVPLLFAGIHSR 1041



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +     W        ++ L I  +L      G   N+  +  +   +G  V+D  V  
Sbjct: 348 MILLFLGNWRSTCIIAISIPLSILTSLIALHALGQTINIMTLGGLALAVGILVDDATVTI 407

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           + +    +      +  D I     E    ++ +++   I  +PM    G     F +P+
Sbjct: 408 ENI---ERHLHMGTNLHDAILDGAGEIAVPALVSTLCICIVFVPMFFLTGVARYLF-VPL 463

Query: 802 AFGIVVAASSSIFIAAPILLFI 823
           A  +V A  +S  ++  ++  +
Sbjct: 464 AEAVVFAMLASYVLSRTLVPTL 485


>gi|94969580|ref|YP_591628.1| acriflavin resistance protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551630|gb|ABF41554.1| acriflavin resistance protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 1072

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/638 (10%), Positives = 173/638 (27%), Gaps = 58/638 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+   +I  +GL   +            P  +       GL            
Sbjct: 8   LRRPYTFVVASLLILILGLTSIVTTQKDIFPYIDIP-VVSVIWTYTGL------------ 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+     + +    + + +                I + F  +   E    +VT  +Q
Sbjct: 55  SPDEMEKRMVTISERAMTTTVNDIEHMESQSYNGVAVIKIYFQPNAKVELAISQVTSIMQ 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L        +V      + ++      + +     +           Q+   +  
Sbjct: 115 TILKVLPPGTTPPAIVKYDASSVPVLQLGLAGEGLSES--QLYDYGTNFIRTQLATVQGA 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              L       Q+  + DP ++     +   +S      N         +          
Sbjct: 173 SIPLPYGGKQRQIMVDIDPLQMYAKRVSAQDVSNALGAQNLILPAGNAKM---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N  P T + + D+    +     +      +    AV  + 
Sbjct: 223 ----------GDKDYLVRINSSPTTVQGLNDLPIRSVNGAYVYMKDVAQVRDGFAVQANV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L              + S    ++        + +          +         S  
Sbjct: 273 VRLNGQRSAMLTVLKNGKASTLNIVQQVKDALPRIESTLPSNLKITPQFDQSLFVRASIY 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 AI A L  +++ + +   +  L+   SI L+++ ++ +L+ LG T+ + ++ G+
Sbjct: 333 GVLREAAIAAALTGLMILLFLGSWRSTLIVCISIPLSILTSIIVLTSLGETINIMTLGGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   +  E +       + +  ++  G  +       S ++  I  V +   
Sbjct: 393 ALAVGILVDDATVELENVHRNMGMKKPLTRAILDGAQQIAVPTLVSTLSICIVFVPVVLL 452

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI--------------------IRY 517
            G         A+ +  ++L S   + ++V  M+ ++                      +
Sbjct: 453 TGAAKYLFTPLAMAVVFAMLASYLLSRTLVPTMVHYLLGAEIPLYTEEHPDTKDSRGFIW 512

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
           +  +  + +           +        F  +  +       +  L      +     G
Sbjct: 513 RTHQRFEHHFERFREWYKGILTWALYHRAFVLIVFAAFVLGSGLLSLVIGEDFFPYVDAG 572

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
            ++L V A +   +    +    ++         D   
Sbjct: 573 QMRLHVRAPQGTRIEETETLFAQVEAEIRKIVPADETD 610



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 59/169 (34%), Gaps = 7/169 (4%)

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL 720
              +   +  +G++ + I + + + + F  W      +  L       L    +    FN+
Sbjct: 882  MNQSFTRLGIGIVFAIIFVYLLMAVNFQSWIDPAIILMALPGAFAGILWMLFVTQTTFNV 941

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             ++   +  IG +  + +++                  +    +    L     T++A  
Sbjct: 942  PSLMGTIMSIGVATANSILLVTFANDERLE---GKDRIEAAISAGYTRLRPVCMTALAMI 998

Query: 781  ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            I +LPMA+    GG         +  G+++A  S++ I   +   +   
Sbjct: 999  IGMLPMALAMGEGGEQNAPLGRAVIGGLLLATLSTLIIVPIVYSLLRKK 1047



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 60/152 (39%), Gaps = 5/152 (3%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +  +   ++I +     W   L    ++ L I  ++      G   N+  +  +   +G
Sbjct: 339 AIAAALTGLMI-LLFLGSWRSTLIVCISIPLSILTSIIVLTSLGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + + +NM +          I     +    ++ ++++  I  +P+ +  G
Sbjct: 398 ILVDDATVELENVHRNMGMKK---PLTRAILDGAQQIAVPTLVSTLSICIVFVPVVLLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +    F  P+A  +V A  +S  ++  ++  +
Sbjct: 455 AAKYLF-TPLAMAVVFAMLASYLLSRTLVPTM 485


>gi|157159358|ref|YP_001461737.1| cation efflux system protein cusA [Escherichia coli E24377A]
 gi|191169314|ref|ZP_03031062.1| cation efflux system protein cusA [Escherichia coli B7A]
 gi|209917830|ref|YP_002291914.1| putative cation efflux system protein CusA [Escherichia coli SE11]
 gi|293408698|ref|ZP_06652537.1| conserved hypothetical protein [Escherichia coli B354]
 gi|301329069|ref|ZP_07222082.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 78-1]
 gi|307315258|ref|ZP_07594835.1| heavy metal efflux pump, CzcA family [Escherichia coli W]
 gi|309798087|ref|ZP_07692461.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 145-7]
 gi|157081388|gb|ABV21096.1| cation efflux system protein cusA [Escherichia coli E24377A]
 gi|190900636|gb|EDV60437.1| cation efflux system protein cusA [Escherichia coli B7A]
 gi|209911089|dbj|BAG76163.1| putative cation efflux system protein CusA [Escherichia coli SE11]
 gi|291471876|gb|EFF14359.1| conserved hypothetical protein [Escherichia coli B354]
 gi|300844585|gb|EFK72345.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 78-1]
 gi|306905356|gb|EFN35895.1| heavy metal efflux pump, CzcA family [Escherichia coli W]
 gi|308118328|gb|EFO55590.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 145-7]
 gi|315059828|gb|ADT74155.1| copper/silver efflux system, membrane component [Escherichia coli
           W]
 gi|320180100|gb|EFW55041.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Shigella boydii ATCC 9905]
 gi|320198298|gb|EFW72902.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Escherichia coli EC4100B]
 gi|323379605|gb|ADX51873.1| heavy metal efflux pump, CzcA family [Escherichia coli KO11]
 gi|323945146|gb|EGB41207.1| CzcA family protein heavy metal efflux pump [Escherichia coli H120]
 gi|324020177|gb|EGB89396.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 117-3]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|291483113|dbj|BAI84188.1| hypothetical protein BSNT_01150 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 1052

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/567 (11%), Positives = 160/567 (28%), Gaps = 37/567 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + V L ++I     L A  N   +S+ D     +                       
Sbjct: 10  KNKFAVWLMTIIVTAAGLYAGMNMKQESIPDVNMPYLT-------------ISTTYPGAT 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    L    +   +  +  + + + +   +  +    +    L+ V
Sbjct: 57  PSQVADEVTKPVEQAVQNLDGVSVVTSTSYENASSVMIEYDYEKDMDKAKTEAAEALENV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N  L  D K   +   +     I+    + D    +  E + ++    + ++   E    
Sbjct: 117 N--LPDDAKDPEISRYSLNSFPILTLSVSSD--KDNLQELTKQVEDSLVSKLEGIEGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S + + ++       +L++       +       + +    ++       S      
Sbjct: 173 VQVSGQQVEEVEFSFKEDKLKEYGLDEDTVKQVIQGSDVTTPLGLYTFGNEEKSVVVSGD 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD-------------- 288
           +E   ++  + +  A+A+    +          +                          
Sbjct: 233 IETIKDLKNMRIPTASASSAGSSAASQAGAQSAQAAQSAQAAAQAQQSASTAVPTVKLSD 292

Query: 289 -NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
               K +                         +     +                     
Sbjct: 293 IATIKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADNVKAE-LKKFKEDHKGFNYSA 351

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                     S           A   ++++ + +   K  L++  SI L++++ L +L  
Sbjct: 352 TLDMAEPITQSVDTMLSKAIFGAIFAIVIILLFLRDIKSTLISVVSIPLSLLIALLVLQQ 411

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTIF 464
           L  TL + ++  + + IG  VD +I+V E I    R           +       +  I 
Sbjct: 412 LDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKALVREATKEMFKPIM 471

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            S I  +   + L   GG     F I   L+I+ ++  ++ I   ++  +      KS+ 
Sbjct: 472 SSTIVTIAVFLPLALVGGQIGELF-IPFALTIVFALAASLVISITLVPMLAHSLFKKSLT 530

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVG 551
             P+      P  +A  + +   W + 
Sbjct: 531 GAPIKAKEHKPGRLANIYKKVLNWALS 557



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 92/236 (38%), Gaps = 3/236 (1%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + ++ ++  +   +    +   +  ++    ++V     ++   KK  E         T
Sbjct: 293 IATIKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADNVKAELKKFKEDHKGFNYSAT 352

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +   I++ +       +  +  A++I +         L ++ ++ L +   L      
Sbjct: 353 LDMAEPITQSVDTMLSKAIFGAIFAIVIILLFLRDIKSTLISVVSIPLSLLIALLVLQQL 412

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  V+D +VV + + + M+L    +  + L+ ++  E     + 
Sbjct: 413 DITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKALVREATKEMFKPIMS 472

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +++      LP+A+ GG +      FA+ + F +  +   SI +   +   ++   
Sbjct: 473 STIVTIAVFLPLALVGGQIGELFIPFALTIVFALAASLVISITLVPMLAHSLFKKS 528



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 95/261 (36%), Gaps = 8/261 (3%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +K    L            V+    +      +          +         S   T V
Sbjct: 789  YKSVKDLENKKITSATGQEVKIGDVAKVKEGSTSDTVSKRDGKVYADVTGEVTSDNVTAV 848

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
               ++KKI ++     +            +   K  + ++ +   + + + I F    A 
Sbjct: 849  SAAIQKKIDKLDHPDNVSIDTGGVSADIADSFTKLGLAMLAAIAIVYLVLVITFGGALAP 908

Query: 695  GAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             AI  +L   +   L    + G   +L A+  +L LIG  V + +V+ DR+   +     
Sbjct: 909  FAILFSLPFTVIGALVGLYVSGETISLNAMIGMLMLIGIVVTNAIVLIDRV---IHKEAE 965

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAA 809
             +S R+ + ++ +  L   + T++A   +++P+A+    G  VI     + +  G++ + 
Sbjct: 966  GLSTREALLEAGSTRLRPILMTAIATIGALIPLALGFEGGSQVISKGLGVTVIGGLISST 1025

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
              ++ I   +   +  +R K 
Sbjct: 1026 LLTLLIVPIVYEVLAKFRKKK 1046


>gi|323528718|ref|YP_004230870.1| acriflavin resistance protein [Burkholderia sp. CCGE1001]
 gi|323385720|gb|ADX57810.1| acriflavin resistance protein [Burkholderia sp. CCGE1001]
          Length = 1063

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 77/701 (10%), Positives = 186/701 (26%), Gaps = 61/701 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     ++L  ++  +G     P  + ++  D FP+                  +V   
Sbjct: 8   LRRPYTFIVLAVLLFVLG-----PLAIMRTPTDIFPNIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D  +     Y   L + +              + + + F           +   
Sbjct: 52  NGFSAEDMAHRITSNYERALTTDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + ++    + D +                 Q+   
Sbjct: 112 NSASILRVLPPGTLPPNIITYNASTVPVLQLGLSSDTLPEQT--LYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  E DP  L+        +       N    G    +     + 
Sbjct: 170 QGAAVPLPFGGKIRQIMVELDPKALQAKGLAPIDVVNAVNAQNLILPGGTAKIGSREYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     D+    +     +     ++    A  
Sbjct: 230 EMNGSTKTVAAL--------------------NDLPIKTVQGGVVYVRDVAHVIDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    I+    +   + AG                   
Sbjct: 270 TNIVRSDGKRAALLQVEKTGSASTLTIIQQVKDMLPKIAAGLPKALRITPLSDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S       I A L  +++ + +   +  L+   +I L V+ +L  L+ LG T+ + ++
Sbjct: 330 AISGVVREALIAACLTAVMILLFLGSWRATLIIAVTIPLAVLTSLIALAALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     K + +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLEKGEPLHDAILNGSGEIAVPTFVSTMSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIR----------------YK 518
           F   G         A  +  ++  S F + +++  + ++++R                 +
Sbjct: 450 FLLSGVARYLFVPLAEAVVFAMCASYFFSRTLIPTLAMYLMRAPSKEGHNARGRFAALAR 509

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
                + +  +        +       R +      L     I + F     +     G 
Sbjct: 510 FQARFERHFEALRSSYRAMLGRAIAGRRRFVPVYVALCLASLILVPFAGRDFFPAVDTGQ 569

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
           I+L + A     +       + ++    S      +   L  +              + V
Sbjct: 570 IRLHLRAPTGTRIEETARLTDQVEAKIRSVIPASDQAAVLDNIGVPVSGINLTYDSSDPV 629

Query: 639 KKKITEIVPL-STIQNTEIVGPKISRELIRKGIVGVIISAI 678
             +  +I+                 R ++     GV  + +
Sbjct: 630 GPEDADILVTLQPKHKPTAQYVAQLRNVLATSFPGVTFAFL 670



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 80/234 (34%), Gaps = 8/234 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR     +            +      LQ +   S +   +++ VK  + +I        
Sbjct: 256 VRDVAHVIDGYAPQTNIVRSDGKRAALLQVEKTGSASTLTIIQQVKDMLPKIAAGLPKAL 315

Query: 654 TEIVGPKISRELIR--KGIV--GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                   S  +     G+V   +I + +  ++ +     W   L    T+ L +  +L 
Sbjct: 316 RITPLSDQSVFVKAAISGVVREALIAACLTAVMILLFLGSWRATLIIAVTIPLAVLTSLI 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             A  G   N+  +  +   +G  V+D  V  + +              D I     E  
Sbjct: 376 ALAALGQTINIMTLGGLALAVGILVDDATVAIENI---THHLEKGEPLHDAILNGSGEIA 432

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +  ++M+  I  +PM +  G     F +P+A  +V A  +S F +  ++  +
Sbjct: 433 VPTFVSTMSICIVFVPMFLLSGVARYLF-VPLAEAVVFAMCASYFFSRTLIPTL 485



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 58/158 (36%), Gaps = 7/158 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +  +   + + + + F  W   L  I+ L   +              ++ A+   +  IG
Sbjct: 891  LAFAIALVYLLMVVNFQSWLDPLIIISGLPASLAGIAWMLFTTHTTLSVPALTGTILCIG 950

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R++++           +D   N      + T++A  I +LPMA+   
Sbjct: 951  IATANSILVINTARESLQAGM--EPLAAALDAGFNR-FRPVLMTALAMLIGMLPMALGLG 1007

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             GG         +  G+     S++     +   ++ W
Sbjct: 1008 DGGEQNAPLGRAVIGGLAFGTLSTLMFVPVVFGMVHAW 1045


>gi|302550879|ref|ZP_07303221.1| integral membrane efflux protein [Streptomyces viridochromogenes
           DSM 40736]
 gi|302468497|gb|EFL31590.1| integral membrane efflux protein [Streptomyces viridochromogenes
           DSM 40736]
          Length = 1038

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/516 (12%), Positives = 155/516 (30%), Gaps = 35/516 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           + +     L  ++  I L+      +PQ      P+        L            +  
Sbjct: 6   KFSLAQRALIGLMSIIALVFGA-IAIPQLKQQLLPTIELPMVSVLAP---------YQGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    ++    +        +  +    I  SF      + +   V   +  
Sbjct: 56  SPDVVEKQVVEPIEDNLEAVDGISGVTSTASEGNAVIMASFDYGNDTKQLVADVQQAVNR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++  +T+   ++VL+  +           + ++ +  +  +   +   
Sbjct: 116 ARVQLPDDVDPQVVAGSTDDIPTVVLAVTSG----RDQQALADQLDKTVVPDLKSIDGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q        +Q+    D ++L +   T   +                G   +     ++ 
Sbjct: 172 QVTVDGVRDLQVAVTPDDAKLAKAGLTPQSLVQALQA----------GGATVPAGSFDEG 221

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V++ G         F        + ++ +          +   + +  A      
Sbjct: 222 GANRTVQVGGG--------FTSLKQIQDLMVTGEPGKGEPVRLGSVAKVKQQEAAADSIT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     S     +        LR          V      A   S   
Sbjct: 274 RTDGKPSLALAVTMDRDGSAVAISDAVQDKLPDLRKDLGSGATLTVVSDQGPAVSKSIKG 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A+     ++V+ + +   +  LV   SI L+V+L L +L     +L + ++  + 
Sbjct: 334 LTTEGALGLLFAVLVILVFLASIRSTLVTAVSIPLSVVLALIVLWTRDLSLNVLTLGALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD +I+V E I+      +    ++          +  S +T +   + +   G
Sbjct: 394 IAIGRVVDDSIVVLENIKRHLGYGEERNSAILNAVREVAGAVTSSTLTTVAVFLPIGLVG 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G        F++T+  ++L S+  ++++V  +  + 
Sbjct: 454 GMVGELFGSFSLTVTAALLASLLVSLTVVPVLSYWF 489



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 69/186 (37%), Gaps = 19/186 (10%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE---LIRKGIVGVIISAIAMLIYIW 685
                V + +     ++   +T+      GP +S+    L  +G +G++ + + +L+++ 
Sbjct: 295 AISDAVQDKLPDLRKDLGSGATLTVVSDQGPAVSKSIKGLTTEGALGLLFAVLVILVFLA 354

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L    ++ L +   L       +  N+  + A+   IG  V+D +VV + ++
Sbjct: 355 ---SIRSTLVTAVSIPLSVVLALIVLWTRDLSLNVLTLGALTIAIGRVVDDSIVVLENIK 411

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
              +           I  ++ E  G    +++      LP+ + GG            G 
Sbjct: 412 ---RHLGYGEERNSAILNAVREVAGAVTSSTLTTVAVFLPIGLVGG----------MVGE 458

Query: 806 VVAASS 811
           +  + S
Sbjct: 459 LFGSFS 464



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 66/195 (33%), Gaps = 8/195 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                              V   ++ +I  +        +     +   E      + ++
Sbjct: 796 DGQRAATITAKPTGDNTGAVSTKLQSEINALKLPEGATASIGGVSEDQDEAFANLGLAML 855

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +   F+     L  + ++    T  +G     G    + A+  +L LIG  
Sbjct: 856 AAIAIVFMLLVSTFRSLVQPLILLVSIPFAATGAIGLLIATGTPMGVPAMIGMLMLIGIV 915

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
           V + +V+ D + +  K         + + +     L   + T++A   ++LPMA+     
Sbjct: 916 VTNAIVLIDLINQYRKQ---GYGVVEAVIEGGRHRLRPILMTALATIFALLPMALGITGE 972

Query: 790 GGSVIGSFAIPMAFG 804
           GG +    A+ +  G
Sbjct: 973 GGFIAQPLAVVVIGG 987


>gi|83590527|ref|YP_430536.1| protein-export membrane protein SecD [Moorella thermoacetica ATCC
           39073]
 gi|83573441|gb|ABC19993.1| protein-export membrane protein SecD [Moorella thermoacetica ATCC
           39073]
          Length = 461

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 142/368 (38%), Positives = 224/368 (60%), Gaps = 35/368 (9%)

Query: 166 IIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
           ++R R+DQ+GI+E  IQR GS R++I+L G  +P    +++G TA++ F           
Sbjct: 103 VMRDRVDQLGIAEPVIQREGSDRLIIELAGVSNPEEAIKMIGKTAQLEFKTSD------- 155

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                               +V +SG  L  A A  D +T +P + + F+  G ++F +V
Sbjct: 156 -------------------GQVVVSGKDLKDAKAIIDQQTREPQITLQFNAEGTKKFADV 196

Query: 286 TRD--------NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF-TIETAGILAAMLR 336
           T+         +  + + + LD ++LT P + +AIP+G+A ISG F   E A  LAA+LR
Sbjct: 197 TKKLASSYPYGDPKRAIGIYLDQQLLTNPQVKEAIPNGQAIISGGFANFEEAANLAALLR 256

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
            G+LP+ + I+E R VG  LG+DS+ K   AI+ GL+ I LFM+++Y   G+VADFS+ +
Sbjct: 257 GGALPVPVQIIERRTVGPTLGADSLAKSKTAIIVGLIAIALFMLLIYRLPGVVADFSLIV 316

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
             ++ +A+L  L ATLTLP IAG++L +G+AVD+NI++ E I+EE R  +++  ++D GF
Sbjct: 317 YGLIVMAVLWGLKATLTLPGIAGLLLSVGMAVDANIIIYEHIKEELRNGKTLRAAIDAGF 376

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
            RA++TIFDSN T ++A +VL+F G G VRGFAIT+ L I  SMFTAI++ R ++  ++ 
Sbjct: 377 KRAFTTIFDSNATTVLAAIVLYFLGSGTVRGFAITLSLGIAASMFTAITLTRFLLHLVVG 436

Query: 517 YKKMKSID 524
                ++ 
Sbjct: 437 VPAFHNLW 444



 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 71/163 (43%), Gaps = 4/163 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + + K    +I+  IA+ +++ + ++    + A  +LI+     +         
Sbjct: 273 GPTLGADSLAKSKTAIIVGLIAIALFMLLIYRLP-GVVADFSLIVYGLIVMAVLWGLKAT 331

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A +L  +G +V+  +++Y+ +++ ++      + R  ID            ++ 
Sbjct: 332 LTLPGIAGLLLSVGMAVDANIIIYEHIKEELR---NGKTLRAAIDAGFKRAFTTIFDSNA 388

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              ++ + +   G   +  FAI ++ GI  +  ++I +   +L
Sbjct: 389 TTVLAAIVLYFLGSGTVRGFAITLSLGIAASMFTAITLTRFLL 431



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/237 (10%), Positives = 64/237 (27%), Gaps = 32/237 (13%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD---F 65
            L   +  + +L          +  +           LGLDL+GG H++++         
Sbjct: 43  FLKLAVVFLAILAIGIGVFKPLINAQ----------RLGLDLKGGVHVLIQAQSTPDHAV 92

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
               +      +R  + + GI    +++   +++ +  A     E     +    Q    
Sbjct: 93  TPDDMAALERVMRDRVDQLGIAEPVIQREGSDRLIIELAGVSNPEEAIKMIGKTAQLEFK 152

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                    ++V+  + + +  +      +        +              E T +  
Sbjct: 153 ----TSDGQVVVSGKDLKDAKAIIDQQTREPQITLQFNA--------------EGTKKFA 194

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
              + L       DP R   +      ++  +V         +    F    +    
Sbjct: 195 DVTKKLASSYPYGDPKRAIGIYLDQQLLTNPQVKEAIPNGQAIISGGFANFEEAANL 251


>gi|121593870|ref|YP_985766.1| CzcA family heavy metal efflux protein [Acidovorax sp. JS42]
 gi|120605950|gb|ABM41690.1| heavy metal efflux pump, CzcA family [Acidovorax sp. JS42]
          Length = 1043

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/571 (12%), Positives = 163/571 (28%), Gaps = 45/571 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+  +++    +   G+   L     ++ LD  P       I          +      
Sbjct: 11  RNSFLVLLATLFVIVAGVFAVL-----RTPLDALPDLSDVQVI---------VYTEYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLSVPKSKVVRGFSFFGASFVYIIFEDDTDIYWARSRVLEYLNF 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +S++       +    T        +    D       E           Q+  +    
Sbjct: 117 ASSRMPKGVTPQIGPDATGVGWVYQYALIAKD---RTLAELRTLQDWYLRYQLTKAHGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +       DP +LR      AK+S      N    G +  +         + 
Sbjct: 174 EVASVGGFVQTYQITVDPVKLRAYGIPLAKVSQVVRDSNRDVGGRVVEMAETEYMVRGKG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I  + +               V+++ DE           +             
Sbjct: 234 YLRGAADIENLVVKTEKGTPVLIRDIARVELAPDERRGLTELNGEGE------------- 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +    I         + AG                   +   
Sbjct: 281 ------VVSGIAMARYGQNALEVIHNLKEKITEVSAGLPQGVSIQAVYDRSDLIHRAIDT 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T    + +V +V  + +++ +  LVA   + + V+++   + LLG    L S+ GI 
Sbjct: 335 LKRTLLEESLIVALVCMVFLMHIRSALVAILMLPVGVLISFIAMRLLGMNSNLMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + IG  VD+ I++ E   +          ++    ++          +F S +   ++ +
Sbjct: 395 IAIGAMVDAAIVMIENAHKHLERLPPEHNSKQRVEAMIAACKEVGPALFFSLLIITVSFL 454

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   S+  +   ++++V  +M+  IR + M            
Sbjct: 455 PVFTLESQEGRMFSPLAFTKTFSMAGAALLSVTLVPVLMMIFIRGRIMPESRNPVNRFLI 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICL 563
            +   I    MR +   + I+++    S   
Sbjct: 515 WVYRPIIAGVMRWKKVTIAIALVVLGVSFYP 545



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 18/166 (10%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + M+  + IR     AL AI  L + +  +     L G+  NL ++  +   IG
Sbjct: 343 SLIVALVCMVFLMHIR----SALVAILMLPVGVLISFIAMRLLGMNSNLMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFR-------DLIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+     +N   +   +          + +  +  E      ++ +   +S L
Sbjct: 399 AMVDAAIVMI----ENAHKHLERLPPEHNSKQRVEAMIAACKEVGPALFFSLLIITVSFL 454

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           P+          F   A    F +  AA  S+ +   +++     R
Sbjct: 455 PVFTLESQEGRMFSPLAFTKTFSMAGAALLSVTLVPVLMMIFIRGR 500



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 52/159 (32%), Gaps = 13/159 (8%)

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----- 741
              +    L  + ++   +   +      G   ++      + L G +    VV+      
Sbjct: 884  FRRLTETLIVMLSVPFALVGGVWLMWWLGYNLSVAVAVGFIALAGVAAETGVVMLIYLDH 943

Query: 742  --DRMRKNMKLYTTS---ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
              + +++  +            + I +   E +   + T +A    +LP+      G  V
Sbjct: 944  AWEEIKEKRRSEGKEPGAADLYEAIMEGAVERVRPKMMTVVAIMAGLLPIMWGTGTGSEV 1003

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +   A P+  G++ +   ++ +   +   +     +  R
Sbjct: 1004 MSRIAAPLVGGMISSTVLTLAVIPALYALVKQVELRRKR 1042


>gi|91209620|ref|YP_539606.1| putative cation efflux system protein CusA [Escherichia coli UTI89]
 gi|91071194|gb|ABE06075.1| putative cation efflux system protein CusA [Escherichia coli UTI89]
 gi|294492152|gb|ADE90908.1| cation efflux system protein cusA [Escherichia coli IHE3034]
 gi|307627987|gb|ADN72291.1| copper/silver efflux system, membrane component [Escherichia coli
           UM146]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVAMGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|74311111|ref|YP_309530.1| putative inner membrane component for iron transport [Shigella
           sonnei Ss046]
 gi|73854588|gb|AAZ87295.1| putative inner membrane component for iron transport [Shigella
           sonnei Ss046]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 173/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKARENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I +       L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIASVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|215485617|ref|YP_002328048.1| copper/silver efflux system, membrane component [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312964385|ref|ZP_07778679.1| cation efflux system protein cusA [Escherichia coli 2362-75]
 gi|215263689|emb|CAS08023.1| copper/silver efflux system, membrane component [Escherichia coli
           O127:H6 str. E2348/69]
 gi|312290862|gb|EFR18738.1| cation efflux system protein cusA [Escherichia coli 2362-75]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 91/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V           +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVFTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|270158441|ref|ZP_06187098.1| HelA protein [Legionella longbeachae D-4968]
 gi|289166720|ref|YP_003456858.1| HelA protein [Legionella longbeachae NSW150]
 gi|269990466|gb|EEZ96720.1| HelA protein [Legionella longbeachae D-4968]
 gi|288859893|emb|CBJ13879.1| HelA protein [Legionella longbeachae NSW150]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 80/684 (11%), Positives = 178/684 (26%), Gaps = 67/684 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W ++L+++I  +  +        +  +D  P                 +++ ++++ + 
Sbjct: 13  RWFILLFTLIIALLGVY----NFQRLPIDAVPDI---------------TNVQVQINTEA 53

Query: 65  ------FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  V   +    +   S L          R   +++T+ F D          +   
Sbjct: 54  SGYSPFEVEQRITFPIELALSGLPNLDYTRSLSRYGLSQVTVVFKDGTDIYFARQLINER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLS----QNNIDQVISHAIEQSMEIIRQRIDQI 174
           LQ V  KL  + +  L   +T      + +     N       +  E           Q+
Sbjct: 114 LQEVKDKLPPEAETTLGPISTGLGEIFMYTITNKSNVPKVQRYNPTELRTIQDWIIKPQL 173

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
              E   +         Q     DP++L +      ++       N +           +
Sbjct: 174 RNVEGVAEINTIGGYEKQFHITPDPAKLVRYNLGLNEVVDALQRNNANVGAGYIEHNGEQ 233

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           +       V++  +I  I +                                   +    
Sbjct: 234 NLIRVPGQVQNIPDIENIVIASFE--------------------GTPIRIRDVAKVILGT 273

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +     S     +     E        +                   
Sbjct: 274 ELRTGAATENGQEVVLGTVSMLMGENSRTVSERVAAKMKAINKSLPEGVEATTVYNRTVL 333

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV I+LF+ +   +  L+    I L+++LT+  +     +  L
Sbjct: 334 VNATINTVKKNLLEGALLVCIILFLFLGNIRAALITAMVIPLSMLLTITGMVTNKISANL 393

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC-----------SLDMGFSRAYSTI 463
            S+    L  GL VD  +++ E   +   + Q                          +I
Sbjct: 394 MSLGA--LDFGLIVDGAVIIVENCMKHLGEKQHEAQRPLLLDERLKVIAYATTEVIRPSI 451

Query: 464 FDSNITALIATVVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           F   I  ++   +L   G         A T+ ++++ SM  A++ V A +   +R    +
Sbjct: 452 FGVFIITVVYLPILTLTGVEGKMFLPMAETVIIALMASMLFALTFVPAAIAIFLRKPVQE 511

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG---G 578
             +             +   F    +      +L  I  +      G       +G    
Sbjct: 512 KENKLVHYISQGYARILRYCFHARLWVIGAAVVLVLISFLIAFRMGGEFIPSLDEGDIAM 571

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             + +          ++  +E         Q    +             +VA T ++   
Sbjct: 572 HAMRIPGTSLTQSIEMQDLVEQRVRQFPEVQTVFAKLGTAEVATDPMPPNVADTFIILKP 631

Query: 639 KKKITEIVPLSTIQNTEIVGPKIS 662
           +K              EI      
Sbjct: 632 RKDWPNPKKNKQKLVQEIEDAVKQ 655



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 88/247 (35%), Gaps = 12/247 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             + +S V   + S     IS +           ++ +   S      L M +        
Sbjct: 801  YIPVSEVAKMVRSESPNQISREIGKRRVVVSANVRGRDLSSFVSDAKLRMEQNIKIPSGY 860

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              T           S+ L     + + I+ + + + +++ F        + + I  +  T
Sbjct: 861  WITWGGQFEQLQSASQRLQ----IVIPITLVGIFLLLFMSFGSVKNALLVFSGI-PLALT 915

Query: 708  LGFFALFG--IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             G FAL+   I  +++A    + L G +V + +V+   +  N       +  +D + +  
Sbjct: 916  GGVFALWARCIPLSISAGVGFIALSGVAVLNGLVMITFI--NKLREQKKLYLKDAVLQGS 973

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   +   
Sbjct: 974  LARLRPVLMTALVASLGFVPMALATGTGSEVQRPLATVVIGGIISSTFLTLLVLPGLYYV 1033

Query: 823  IYDWRAK 829
             +  R  
Sbjct: 1034 FHKRRKP 1040


>gi|322379010|ref|ZP_08053413.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter suis HS1]
 gi|321148502|gb|EFX42999.1| cytoplasmic pump protein of the hefABC efflux system HefC
           [Helicobacter suis HS1]
          Length = 1043

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/605 (12%), Positives = 167/605 (27%), Gaps = 48/605 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+   MI   G +      L +  +  FP+      +                  
Sbjct: 8   RPITTVMFALMIVFFGTMA-----LKKISVALFPNVDYPIVV---------VKTQYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +E    +        +     + +T+ F   +      + V   +  V
Sbjct: 54  ADIVESKVTDKIEEAVMEIDGIKKVTSNSALNVSVVTIEFVLEKPITVAVNDVINKVSSV 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
               + + +K  +        +I+    +         E +          +   E    
Sbjct: 114 TFN-DTNIRKPTVDKVDTSGQAILSIFLSSK--TQSLAELNDHAKNVIKPMLQKVEGVGN 170

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     Q+    DP+ L +   T   +       N    G     +    +      
Sbjct: 171 VQLNGYQEKQIRIYADPTLLNKYGLTFNDLYNTLNTQNLEMDGGKIISKTKNYAILVDGN 230

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +I+ I +                                   I K +   +    
Sbjct: 231 SYKLSDIANIQI------------------------GSNVRLGDIATIEKGIDTDITYAS 266

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         A  +    ++        +RA S                  S    
Sbjct: 267 YGNEPGIVLEVQKIAGANEIKIVDAIYKEMDAMRAASPGYN-IRPFLDTTSYTRHSIEDV 325

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K    +   L + V+FM +       V+  SI ++++ T AL++ +G +L + ++  + L
Sbjct: 326 KFDLILGGILAVSVVFMFLRSFSITFVSAMSIPISIMGTFALVNWMGFSLNMLTMVALTL 385

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV---LFF 479
            IG+ +D  I+V E I ++         +   G       I   +   L   +    +  
Sbjct: 386 SIGIIIDDAIVVIENIHKKLESGMDKKTASYEGVHEIAFAIIAISAMLLSVFIPVGSMTG 445

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI---NPLSRFFLIPD 536
             G   + F IT+ L+I IS    ++++  +   ++  K+    +           L   
Sbjct: 446 MSGRFFKSFGITVALAIAISYIVVVTVIPMLSSILVNSKQSAFYNFTEPFFQKMDKLYAK 505

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +           + ++ +F                 + +G   + V A+  + L  +  
Sbjct: 506 LLGWILNHKLIILLVVAGIFVSSVRVASKLGMEFILQEDRGRFYIWVKADTDISLQHMLQ 565

Query: 597 NLESL 601
            +++L
Sbjct: 566 KMKAL 570



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 80/223 (35%), Gaps = 8/223 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V +  +P    +   +L  V+    + +  +          ++    +  G   +
Sbjct: 792  NRQRSVTVLARPAGGASLGDLLNQVRAHKDKWLVQNVFFAFTGQSERVQENSVAFG-TAI 850

Query: 674  IISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +   ++     L  + T+ L  +       L     ++ ++  ++ LIG 
Sbjct: 851  STAFILIYMILAALYESILEPLIIMITMPLSFSGAFFALGLVHQPMSMFSLMGLILLIGM 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               +  ++ D  ++  K         + +  +    L   + T++A    +LP+A+    
Sbjct: 911  VGKNATLIIDIAKEKRKE---GHGIEEAVILAGESRLRPILMTTIAMVFGMLPLALATGQ 967

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G ++     I M+ G++V+   S+ +       I     K  +
Sbjct: 968  GSAMKAPIGIAMSGGLIVSTLLSLLVVPIFYRLIAPIDDKLKK 1010



 Score = 45.5 bits (105), Expect = 0.041,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 79/256 (30%), Gaps = 15/256 (5%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G  +K      +     V L  + +  + +          +     L   +    + +  
Sbjct: 229 GNSYKLSDIANIQIGSNVRLGDIATIEKGIDTDITYASYGNEPGIVLEVQKIAGANEIKI 288

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              +      +    P   I+            +       ++   +A+ +       + 
Sbjct: 289 VDAIYKEMDAMRAASPGYNIRPFLDTTSYTRHSIEDVKFDLILGGILAVSVVFMFLRSFS 348

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
               +  ++ + I  T       G   N+  + A+   IG  ++D +VV + +    K  
Sbjct: 349 ITFVSAMSIPISIMGTFALVNWMGFSLNMLTMVALTLSIGIIIDDAIVVIENIH---KKL 405

Query: 752 TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            + +  +    + ++E     +  S   ++ FI V  M    G    SF I +A  I ++
Sbjct: 406 ESGMDKKTASYEGVHEIAFAIIAISAMLLSVFIPVGSMTGMSGRFFKSFGITVALAIAIS 465

Query: 809 ---------ASSSIFI 815
                      SSI +
Sbjct: 466 YIVVVTVIPMLSSILV 481


>gi|26246553|ref|NP_752592.1| putative cation efflux system protein cusA [Escherichia coli
           CFT073]
 gi|48474860|sp|Q8FK36|CUSA_ECOL6 RecName: Full=Cation efflux system protein CusA
 gi|26106952|gb|AAN79136.1|AE016757_40 Putative cation efflux system protein cusA [Escherichia coli
           CFT073]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 171/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +      G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPXNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|300824996|ref|ZP_07105094.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 119-7]
 gi|331676227|ref|ZP_08376939.1| cation efflux system protein CusA [Escherichia coli H591]
 gi|300522516|gb|EFK43585.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 119-7]
 gi|331076285|gb|EGI47567.1| cation efflux system protein CusA [Escherichia coli H591]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVTALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|302866775|ref|YP_003835412.1| protein-export membrane protein SecD [Micromonospora aurantiaca
           ATCC 27029]
 gi|302569634|gb|ADL45836.1| protein-export membrane protein SecD [Micromonospora aurantiaca
           ATCC 27029]
          Length = 626

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 116/600 (19%), Positives = 217/600 (36%), Gaps = 91/600 (15%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE----VDEDDF 65
           L  +     +L  L  F        +   +      LGLDL GG+ L LE    VD    
Sbjct: 7   LAVLGFIFVVLYLLV-FFSGGASGGWKDRLEP---RLGLDLVGGTRLTLEATNTVDGKPP 62

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFAD-SRFKENIADKVTLFLQGVN 123
               L+     + S +   G+    +    N+ I +S    +R   ++ +   L  + V 
Sbjct: 63  TADNLEEARQIIESRVNAYGVAEAEVVTEGNRNIVISLPGQNRDLTDVGEAAELRFRKVL 122

Query: 124 ------------SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI--------------- 156
                       +             +         S                       
Sbjct: 123 KATDGSGAALAPAPTPSATPSGAATPSGSASPKASTSPKVSGSPSAGGQGGMAPTPSASA 182

Query: 157 ------------------SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
                             +  + QS+E  R+ ++Q   + +     G             
Sbjct: 183 SASPSASPSAAAPSPSASAEPVPQSIEQQRKAVEQKVGAAAWAAASGLQAPADLTTDPSL 242

Query: 199 PSRLRQLLGTTAK---------------MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             +L+     T +               ++  ++    +        + +    G +YL+
Sbjct: 243 ADKLKPFGTLTPQEIAVLPVEMQFNVPTITCAQLDKRPAASIKDEKQKAVACESGAKYLL 302

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI------------- 290
           +    +         +    +T   VV ++F   G  ++  +TR+               
Sbjct: 303 DVAKVLGTDV--KNASAQLDQTSSWVVSLNFTGSGQEKWTALTREAFTNEGQACDQTALG 360

Query: 291 --GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
             GK    V+    + +    Q + +G +QI+G+F  + A  LA+ LR G+LP+     E
Sbjct: 361 QDGKCRVAVVLDNEIVSSPEIQGVLTGDSQITGSFDNKAANALASQLRYGALPVTFEPQE 420

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ++NV A LG   +  G  A   G++L++++    Y   G V   S+ L+ +L    L +L
Sbjct: 421 QQNVTATLGDSHLKAGLLAAGIGMLLVIIYSFFYYRLLGSVIFLSLVLSALLVFGALVVL 480

Query: 409 ----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
               G TLTL  IAG+++ +G+A DS ++  ER+++E R+ +S   ++   + RA  TI 
Sbjct: 481 GRSIGFTLTLAGIAGMIVSLGVAADSFVIYFERLKDEIREGRSPRSAVPRAWIRARRTII 540

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            +N   L++ VVL+    GAV+GFA  +GL+ ++ +         +M    R +   S  
Sbjct: 541 SANAITLMSAVVLYIVSVGAVKGFAFALGLATVLDLVVVFLFRHPIMTMFARTRAFLSPR 600



 Score = 97.5 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 76/227 (33%), Gaps = 8/227 (3%)

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           D    +    +  L       G    +       + +   +      Q  + V   +   
Sbjct: 372 DNEIVSSPEIQGVLTGDSQITGSFDNKAANALASQLRYGALPVTFEPQEQQNVTATLGDS 431

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNL 720
            ++ G++   I  + ++IY +  ++   ++    +L+L      G   + G        L
Sbjct: 432 HLKAGLLAAGIGMLLVIIYSFFYYRLLGSVI-FLSLVLSALLVFGALVVLGRSIGFTLTL 490

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +A ++  +G + +  V+ ++R++  ++      S R  + ++        +  +    
Sbjct: 491 AGIAGMIVSLGVAADSFVIYFERLKDEIRE---GRSPRSAVPRAWIRARRTIISANAITL 547

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +S + + +     +  FA  +    V+          PI+      R
Sbjct: 548 MSAVVLYIVSVGAVKGFAFALGLATVLDLVVVFLFRHPIMTMFARTR 594


>gi|148240920|ref|YP_001220421.1| RND family outer membrane copper/silver/drug transport protein
           [Bradyrhizobium sp. BTAi1]
 gi|146411296|gb|ABQ39749.1| outer membrane copper (silver) and drug transport protein (RND
           family) [Bradyrhizobium sp. BTAi1]
          Length = 1069

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/584 (12%), Positives = 159/584 (27%), Gaps = 40/584 (6%)

Query: 12  SMICCIGLLIALPNFLPQS---MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            ++   G   A    L       LD  P       I          +          +  
Sbjct: 13  LLLVLFGTGFAAAAGLYALIHLPLDAIPDLSDTQVI---------VYTEYPGQAPQVIED 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +          + K  +         + + + F D         +V  FL    S+L  
Sbjct: 64  QVTYPLTTAMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDIYWARSRVMEFLNSAASRLPA 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                +    T        +  + +  ++                +  +    +      
Sbjct: 124 GVTPTIGPDATGVGWVYQYAVMSKELNLADTRTIQD---WNLKFALAKAGGVAEVASIGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            + Q     DP R+R    +  K+       N    G    +         +  ++   +
Sbjct: 181 FVKQYNVVLDPQRMRDRGISMQKVREAIRASNADVGGRTVELSEFEYVIRGKGYIKSIND 240

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +                      +     G              P        +     +
Sbjct: 241 LG-------------------NIVLKTSNGTPVLLRDVATVELGPDERRGIAELNGEGEV 281

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +  ++    IE        + +        +           +    K T   
Sbjct: 282 ASGIVLQRFGVNALDVIENVKKRFKEIASSLPKSVEIVPVYDRSNLIYAAIETLKHTLLE 341

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + +V +V  + +L+ +  LVA   + + V++    + LLG    + S+ GI + IG  V
Sbjct: 342 ESIVVALVCVVFLLHVRSALVAILMLPVGVLMAFGAMKLLGLGSNIMSLGGIAIAIGAMV 401

Query: 429 DSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           D+ I++ E   +     +  +S    L    S     +F S +   ++ + +F      G
Sbjct: 402 DAAIVMIENAHKHLERAKPGESRVQMLIDAASEVGPALFFSLLIITVSFMPIFTLESQEG 461

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   S+  +   ++++V A+M+  +R + +             I   +    
Sbjct: 462 RLFSPLAFTKTFSMAAAALLSVTLVPALMVIFVRGRIVPESRNFINRFLIWIYRPVIRGV 521

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           +RA+   +  SI     SI      G  +      G  L +   
Sbjct: 522 LRAKTLVILASIAVLAVSIWPARQLGTEFMPSLNEGTLLYMPTT 565



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++++ + ++  + +R     AL AI  L + +    G   L G+  N+ ++  +   IG
Sbjct: 343 SIVVALVCVVFLLHVR----SALVAILMLPVGVLMAFGAMKLLGLGSNIMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+  +V+ +   K+++      S   ++  + +E      ++ +   +S +P+     
Sbjct: 399 AMVDAAIVMIENAHKHLERAKPGESRVQMLIDAASEVGPALFFSLLIITVSFMPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRLFSPLAFTKTFSMAAAALLSVTLVPALMVIFVRGR 497



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 81/271 (29%), Gaps = 20/271 (7%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               I + + A   V L  V     +     I  +N        V ++ +   S       
Sbjct: 773  ASDILVPMPAGGAVPLGEVAKVEPARGPTSIRTENGQLATYIYVDIRDRDIGSYVADAQR 832

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
             +                      + +  L     + V ++   + + +++ F+   A  
Sbjct: 833  AVNDSIQFPAGYYVVWSGQYEYLQRAAARLK----IVVPVTLTIIFLLLYLNFR-AIAET 887

Query: 696  AITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKL 750
             I  L L      G       G   ++      + L G +    V++    D     +K 
Sbjct: 888  LIVMLSLPFALVGGIWMMWWLGFNLSVAVAVGFIALAGVAAETGVIMLIYLDHALAEVKA 947

Query: 751  YT-------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
                     T +   D I     E +   + T +A    +LP+      G  ++   A+P
Sbjct: 948  RRSVEGRALTRLDLHDAIMVGAVERVRPKMMTVVAIMAGLLPIMWSTGTGSEIMQRIAVP 1007

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            M  G++ +   ++ +   I   +     KN 
Sbjct: 1008 MIGGMISSTLLTLIVIPAIFGLVKGAGLKNK 1038


>gi|323976445|gb|EGB71535.1| CzcA family protein heavy metal efflux pump protein [Escherichia
           coli TW10509]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 171/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  +      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLIGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   L          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQLTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKNALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSSKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIIMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLDNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|318042452|ref|ZP_07974408.1| heavy metal efflux pump, CzcA family protein [Synechococcus sp.
           CB0101]
          Length = 1040

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/548 (11%), Positives = 155/548 (28%), Gaps = 40/548 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R +     L  +   +  L  L   L Q  LD FP   P          +    +  + 
Sbjct: 10  LRFSIARRWLVVVAAVVVSLAGLV-MLRQMPLDVFPQFAPP---------QVDVQITADG 59

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   + +  +   + +        S +   + + + F  +         V+  +Q
Sbjct: 60  LSPEEVETRITLPVESALNGIAGVETVRSSSKAGLSMVQVVFNQNADIYRARQSVSERMQ 119

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI-DQVISHAIEQSMEIIRQRIDQIGISES 179
            V ++L  +     +        +I+     +     +  ++    ++R   + I     
Sbjct: 120 QVEAQLPANAAAPEISPLVSPLGTILQYAFTVEPGGTTSLMDLHQLVLRSYRNPILAVPG 179

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q         Q     DP  L+    +   +        ++  G              
Sbjct: 180 VAQITVYGGEEAQHQVLLDPQELQVKGVSLKAVMQGVSAAMSTSPGGFL----------- 228

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                    + G            +    + D++  +   R     T   + +  A+   
Sbjct: 229 ---------VGGGQERLIRPLAQIQQTSDLADVAVTDQQGRPVLLSTLAEVKRRPALKRG 279

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                       +   +  +             A L              R       + 
Sbjct: 280 DASFNGQPAVVLMVIKQPDVDTPTVTRAVEQRIAELNRTLPTDVRVRRTFRQSNFIDTAL 339

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +  +   +V +V+   ++  +  ++   +I L++++ L L+   G  L   ++ G
Sbjct: 340 RNVSESLLLGIVIVSLVIVAFLMNWRAAVITLSAIPLSLLVGLMLMKAFGLGLNTMTLGG 399

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVF------CSLDMGFSRAYSTIFDSNITALIA 473
           +V+ IG  VD +I+  E      R+NQS          +          +  S +   + 
Sbjct: 400 LVVAIGSVVDDSIVDMENCYRGLRRNQSSPTPRSPLQVVFDTSVEVRQPVLFSTLIIAVV 459

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
              +F      G       +    SI  S   A+++  A+   ++   ++   +    +R
Sbjct: 460 FAPIFSLTGVEGRIFAPMGLAYLFSIGASTLVAVTLSPALCAILLAPVQLPPENTWIANR 519

Query: 531 FFLIPDCI 538
              I    
Sbjct: 520 CERIYRPW 527



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 67/160 (41%), Gaps = 6/160 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +  ++ + +  L+ I         +  +  L L +   +    L G   ++ ++   +TL
Sbjct: 870  LYSLVAAVVITLLMITAVKSLPATVAIMLNLPLALVGGVVAVLLSGAVLSVASLIGFITL 929

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
             G +V + +++ D      + +        +I++   E L   + T++++ +  LP+AV 
Sbjct: 930  FGVAVRNGLLLVDNYN---RRHAAGQPVHTVIEEGSLERLNAILMTALSSALGTLPLAVA 986

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               G  ++   A+ +  G++ + + ++ +   +      W
Sbjct: 987  FGAGSEILQPLAVVLLGGLITSTALTLLVIPALYARFGRW 1026



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 88/251 (35%), Gaps = 9/251 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +     RPV LS +        +              L+ ++    D+   TR +E    
Sbjct: 254 VTDQQGRPVLLSTLAEVKRRPALKRGDASFNGQPAVVLMVIKQPDVDTPTVTRAVEQRIA 313

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITT 699
           ++   +P                  +R     +++  + + L+ +     W  A+  ++ 
Sbjct: 314 ELNRTLPTDVRVRRTFRQSNFIDTALRNVSESLLLGIVIVSLVIVAFLMNWRAAVITLSA 373

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MRKNMKLYTTSI 755
           + L +   L     FG+  N   +  ++  IG  V+D +V  +     +R+N    T   
Sbjct: 374 IPLSLLVGLMLMKAFGLGLNTMTLGGLVVAIGSVVDDSIVDMENCYRGLRRNQSSPTPRS 433

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGIVVAASSS 812
             + + D S+ E     +++++   +   P+    G     FA   +   F I  +   +
Sbjct: 434 PLQVVFDTSV-EVRQPVLFSTLIIAVVFAPIFSLTGVEGRIFAPMGLAYLFSIGASTLVA 492

Query: 813 IFIAAPILLFI 823
           + ++  +   +
Sbjct: 493 VTLSPALCAIL 503


>gi|182413370|ref|YP_001818436.1| CzcA family heavy metal efflux protein [Opitutus terrae PB90-1]
 gi|177840584|gb|ACB74836.1| heavy metal efflux pump, CzcA family [Opitutus terrae PB90-1]
          Length = 1109

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 72/570 (12%), Positives = 164/570 (28%), Gaps = 40/570 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N +LV++ +    IG + A+ N      LD  P       I          +        
Sbjct: 12  NRFLVLVATAALIIGGVYAVRNI----PLDAIPDLSDTQVI---------IYTEWPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   L          +    +         + + + F D         +V  +L G++
Sbjct: 59  QIVQDQLTYPITTKMLSVPSAKVVRGYSFYGFSFVYIIFDDGTDPYWARSRVLEYLSGLS 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           + L       L    T    + + S   I+       E           Q+   +   + 
Sbjct: 119 NSLPKGVSPTLGPDATGVGWAFMYS---INSPKRDLAELRSMQDWYLKYQLSSVDGVAEV 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                 + Q     DP+RLR    +  +++      N    G    +         +  V
Sbjct: 176 ASVGGYVKQYQITVDPNRLRAYGLSLGEVASAVQRSNGEVGGRSLELAEKEFILRVKGYV 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               ++                    V +     G         +    P        + 
Sbjct: 236 TGLDDLR------------------QVAVGVGPGGTPILLGEVANVQLGPDMRRGIAELN 277

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   +   +  +     IE           G        V          S    +
Sbjct: 278 GEGETVGGVVVVRYGVDTRAVIEAVKARLDQAMKGLPDDVSYTVTYDRTALIERSVKTLE 337

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T    + +V +V+ + +++ +  L+    + ++V+ +  ++   G +  + S+ GI + 
Sbjct: 338 HTLLEESIVVALVIIVFLMHLRTALIPILILPISVLASFMIMYGQGISSNIMSLGGIAIA 397

Query: 424 IGLAVDSNILVNERIREENRKN---QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
           IG+ VD  I++ E   +   ++   +  +  +         TIF + +   ++ + +F  
Sbjct: 398 IGVLVDGVIILVENTHKHLERDAGTKPHWEIVRDAAVEVGPTIFYALLVVTVSFLPVFTL 457

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   +  A T   S+  +   AI++   +  + IR +               +   
Sbjct: 458 QEQEGRLFKPLAFTKTYSMAAAALLAITLAPVLAGYFIRGRLRPEEKNPVSRFLIWLYHP 517

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTH 567
           +  + +R R+  V  + +  +         
Sbjct: 518 VINRVIRWRWPVVITAAVLVLWVFVPWNRW 547



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 51/169 (30%), Gaps = 14/169 (8%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            IV + +  + +LIY+               +   +        L     ++     ++ L
Sbjct: 940  IVPITLFIVGILIYLS-THSLVKTAIVFLAVPFSLVGAFWLLHLLDYNLSVAVWIGLIAL 998

Query: 730  IGYSVNDKVVVY--------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
             G      VV+         D +R        S      I     + +   + T+   FI
Sbjct: 999  AGLDAETGVVMLLYLDIAYADGVR--TGRMRHSDDLVAAIHHGAVQRIRPKMMTAATTFI 1056

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             ++P+      G  V+   A PM  G++ +    + +   I        
Sbjct: 1057 GLVPILWSTGTGADVMKRIAAPMVGGVITSVLMELLVYPAIFYMWRRRS 1105



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/132 (14%), Positives = 52/132 (39%), Gaps = 7/132 (5%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++++ + ++  + +R     AL  I  L + +  +       GI  N+ ++  +   IG
Sbjct: 344 SIVVALVIIVFLMHLR----TALIPILILPISVLASFMIMYGQGISSNIMSLGGIAIAIG 399

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
             V+  +++ +   K+++    +    +++  +  E      Y  +   +S LP+     
Sbjct: 400 VLVDGVIILVENTHKHLERDAGTKPHWEIVRDAAVEVGPTIFYALLVVTVSFLPVFTLQE 459

Query: 791 --GSVIGSFAIP 800
             G +    A  
Sbjct: 460 QEGRLFKPLAFT 471


>gi|117622798|ref|YP_851711.1| copper/silver efflux system, membrane component [Escherichia coli
           APEC O1]
 gi|115511922|gb|ABI99996.1| copper/silver efflux system, membrane component [Escherichia coli
           APEC O1]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 173/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T              +      +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRRGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGGAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|82543021|ref|YP_406968.1| inner membrane component for iron transport [Shigella boydii Sb227]
 gi|81244432|gb|ABB65140.1| putative inner membrane component for iron transport [Shigella
           boydii Sb227]
 gi|320182973|gb|EFW57840.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Shigella flexneri CDC 796-83]
 gi|332098497|gb|EGJ03463.1| cation efflux system protein cusA [Shigella boydii 3594-74]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMPFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKNDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 93/288 (32%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       +V+K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIVEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGGAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|34539936|ref|NP_904415.1| CzcA family heavy metal efflux protein [Porphyromonas gingivalis
           W83]
 gi|34396247|gb|AAQ65314.1| heavy metal efflux pump, CzcA family [Porphyromonas gingivalis W83]
          Length = 1039

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 77/610 (12%), Positives = 170/610 (27%), Gaps = 50/610 (8%)

Query: 3   NNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           NN   +++   ++  +G   A         +D FP       +                 
Sbjct: 11  NNRLTILVASVLLMLVGTYTA-----SNMEVDVFPDLNAPTVV---------VMTEATGM 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   +          S     + + + F            V+  L  
Sbjct: 57  APEEVERLVTFPVETAVNGATDVRRVRSSSTTGFSIVWVEFDWGTDIYRARQIVSEKLAV 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +  K  L   +     +++     D       +           ++       
Sbjct: 117 VGADLPDNVGKPTLGPQSSILGEVMIIGLTADST--SLQDLRTLADWTIRPRLLSIGGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       + +     +P R++    T A++    V   N          +  +      
Sbjct: 175 QVTVLGGDIKEYQILLNPERMKHYGITLAEVRAA-VDQMNRNASGGVLYEYGNEYIICGL 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L  +     G  L                 +   +        V    +G     +    
Sbjct: 234 LSTNDAAALGKTL-----------------VKSLDDIPIMLESVAEVRVGNKAPKLGLAS 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I    A  +   T      LA + +A    +K++    R       S S 
Sbjct: 277 ERGQSAVLVTITKQPATSTLELTERLDRSLADLQKALPSDVKVSTDIFRQERFIENSISN 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +         V+IVLF+ ++  +  +++  +I L+++ +   L L+G T+   S+ G+ 
Sbjct: 337 VRKALYEGGIFVVIVLFIFLMNARATIISLVTIPLSLVASFLTLKLMGLTINTMSLGGMA 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFC--------SLDMGFSRAYSTIFDSNITALIA 473
           + IG  VD  I+  E + +  R+N+             +          I +S    + +
Sbjct: 397 IAIGSLVDDAIVDVENVYKRLRENRMKPREEQDTVLNVIFEASKEVRMPILNSTFIIIAS 456

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDIN 526
            V LFF     G  +    I   +++L S   A+++   +  +++  +K         I 
Sbjct: 457 FVPLFFLSGMEGRMLVPLGIAFIIALLASTIVALTLTPVLCSYLLAKRKKDDSPEKEPIV 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +       +   +    +     I              +G   + V   
Sbjct: 517 AKKLKGWYGQALQWSLGNTKKVLLMTGGVLVAALIVFFTLGRSFLPPFNEGSFTINVSTL 576

Query: 587 RPVDLSVVRS 596
             + L     
Sbjct: 577 PGISLEESDR 586



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 74/223 (33%), Gaps = 9/223 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-I 675
             +  Q          R+   +      +     +        +     I      +   
Sbjct: 285 VTITKQPATSTLELTERLDRSLADLQKALPSDVKVSTDIFRQERFIENSISNVRKALYEG 344

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
               +++           + ++ T+ L +  +     L G+  N  ++  +   IG  V+
Sbjct: 345 GIFVVIVLFIFLMNARATIISLVTIPLSLVASFLTLKLMGLTINTMSLGGMAIAIGSLVD 404

Query: 736 DKVV----VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           D +V    VY R+R+N MK      +  ++I ++  E     + ++     S +P+    
Sbjct: 405 DAIVDVENVYKRLRENRMKPREEQDTVLNVIFEASKEVRMPILNSTFIIIASFVPLFFLS 464

Query: 791 GS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           G    ++    I     ++ +   ++ +   +  ++   R K+
Sbjct: 465 GMEGRMLVPLGIAFIIALLASTIVALTLTPVLCSYLLAKRKKD 507



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/305 (14%), Positives = 106/305 (34%), Gaps = 22/305 (7%)

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            A++     S    +  +         Y  +    + L V          +R  +      
Sbjct: 729  AKYGLTPASFAEIVNVMLAGEVVSQVYEGNRSFDLSLKVNDESRESADRIRDLIIDAGGR 788

Query: 605  DISFQNFDG------------EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
             I F                 E      +            V+  ++++I   + L    
Sbjct: 789  KIPFAYVADIVSASGPNTINRENVSRKIVVSANVAGRDLRSVVNDIQERIDADITLPEGY 848

Query: 653  NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
            + E  G   S +   + ++   +  I ++  +        +  A++ L L +    G FA
Sbjct: 849  HIEYGGQFESEQAASRTLLVTSVFFILVIFLLLFNQFRSLSQSAVSLLNLPLALIGGVFA 908

Query: 713  LF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +F  G   ++ A+   ++L G +  + +++  R      L    +S  + + +   + L 
Sbjct: 909  IFFTGGIISIPAIIGFISLFGIATRNGMLLISRYND---LQQAGLSPYESVLRGSLDRLN 965

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              + T++ + ++++P+A+     G+ I S  A  +  G+  +   + FI  PI+  + D 
Sbjct: 966  PILMTALTSGLALIPLALGGELPGNEIQSPMAKVILGGLFSSTILNAFIV-PIMYLLTDK 1024

Query: 827  RAKNA 831
              +  
Sbjct: 1025 SYRER 1029


>gi|110347183|ref|YP_666001.1| CzcA family heavy metal efflux protein [Mesorhizobium sp. BNC1]
 gi|110283294|gb|ABG61354.1| heavy metal efflux pump, CzcA family [Chelativorans sp. BNC1]
          Length = 1058

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 78/669 (11%), Positives = 186/669 (27%), Gaps = 40/669 (5%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           +IL  +     +   L   L    LD  P       I          +          V 
Sbjct: 13  LILIFVGTAFAVAAGLY-ALKTLPLDAIPDLSDVQVI---------VYTDYPGQAPQVVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +          + K  +         + + + F D         +V  +L     +L 
Sbjct: 63  DQVTYPLTTAMLTVPKSKVVRGFSFFGVSLVYVIFEDGTDPYWARSRVLEYLNAAAQRLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 L    T        +    +  ++        ++R        +E   +     
Sbjct: 123 QGVTPGLGPDATGVGWVFQYAVVAKEMTLAELRSLQDWVVRY---GASKAEGVAEVASVG 179

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + Q     DP RLR    + A +       N    G    +         +  ++ + 
Sbjct: 180 GFVKQYNIVVDPLRLRAQGISLAMVRDAVRASNRDVGGRTLELSEFEFMVRGRGYIKSQA 239

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           +I                      +     G              P        +     
Sbjct: 240 DIE-------------------NIVLKSAQGVPLRLRDVARVEIGPDERRGITELNGEGE 280

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I   +   +    I+      A            +           +    KGT  
Sbjct: 281 VASGIVLQRFGANALTVIDNVKQRLAETAGSLPKGAEIVPVYDRSHLIEAAIETLKGTLV 340

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             + +V +V  + +L+ +  LVA   + + +++  A +  +G    + S+ GI + +G  
Sbjct: 341 EESIIVALVCVVFLLHLRSALVAILMLPVGILIAFAAMRAIGLGSNIMSLGGIAIAVGAM 400

Query: 428 VDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FG 481
           +D+ I++ E   +        +S    L    S     +F S +   ++ + +F      
Sbjct: 401 IDAAIVMIENAHKHLERAEPGKSRVQILIDAASEVGPALFFSLLIITVSFLPIFTLESQE 460

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G      A T   ++  +   ++++V A+M+  +R + +             I   +   
Sbjct: 461 GRLFGPLAFTKTFAMAAAALLSVTLVPALMVVFVRGRIIPEHKNPINRFLIWIYRPVIRG 520

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            ++A+   + ++++    S+      G  +      G  + +     +    V    E L
Sbjct: 521 VLKAKTLTILLALIVLGVSVWPARQLGSEFMPSLNEGTLMYMPTT--LPGLSVTKAAELL 578

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
           Q+ D   ++F    +   +       +      +      +            + +  ++
Sbjct: 579 QMQDRIIKSFPEVDSVYGKAGRAATATDPAPTEMFETIINLKPKDQWRPGVTIDSLKAEM 638

Query: 662 SRELIRKGI 670
            + L   G+
Sbjct: 639 DKALQFPGV 647



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 15/146 (10%)

Query: 697  ITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVV-------YDRMRKN 747
            I  L L      G       G   ++      + L G +    VV+          +++ 
Sbjct: 889  IVMLSLPFALVGGVWLMWWLGFNMSVAVAVGFIALAGVAAETGVVMLIYLEQAMAELKEE 948

Query: 748  MKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
                          + I     E +   + T +A    ++P+      G  V+   A+PM
Sbjct: 949  RAKQKRSFTRADLYEAIMLGAVERVRPKMMTVVAIMAGLVPILWSTGTGSEVMQRIAVPM 1008

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWR 827
              G++ +   ++ +   I   I  WR
Sbjct: 1009 IGGMISSTILTLVVIPAIYGLIKGWR 1034



 Score = 42.8 bits (98), Expect = 0.24,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 56/175 (32%), Gaps = 39/175 (22%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + ++  + +R     AL AI  L + I                         IG
Sbjct: 343 SIIVALVCVVFLLHLR----SALVAILMLPVGILIAFAAMR----------------AIG 382

Query: 732 YS----------------VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
                             ++  +V+ +   K+++      S   ++  + +E      ++
Sbjct: 383 LGSNIMSLGGIAIAVGAMIDAAIVMIENAHKHLERAEPGKSRVQILIDAASEVGPALFFS 442

Query: 776 SMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +   +S LP+          F   A    F +  AA  S+ +   +++     R
Sbjct: 443 LLIITVSFLPIFTLESQEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVVFVRGR 497


>gi|254427653|ref|ZP_05041360.1| heavy metal efflux pump, CzcA family [Alcanivorax sp. DG881]
 gi|196193822|gb|EDX88781.1| heavy metal efflux pump, CzcA family [Alcanivorax sp. DG881]
          Length = 1047

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 86/663 (12%), Positives = 194/663 (29%), Gaps = 41/663 (6%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED------DFVNGFLQMY 73
           +  +   LP   LD FP                 +++ ++V+ +      + V   +   
Sbjct: 24  IGVIGWQLPNLKLDAFPDV---------------TNVQVQVNTEAEGLAAEEVEQLITYP 68

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            + +   L +        +   + +T+ F +          V   LQ     +       
Sbjct: 69  IEAVMYALPQVAEVRSISKTGLSIVTVVFEEGTDIYFARQLVFERLQAAREDIPDGVGTP 128

Query: 134 LL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +   T+                   A++            +         L     + Q
Sbjct: 129 EMGPNTSGLGQVYQYLLTAEPGSNVDAMQLRSLNDWVVKLLLMPVGGVTDVLSYGGEVRQ 188

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
                +P+RL     +  ++       N +  G+        D    Q ++     +   
Sbjct: 189 YQVNVNPTRLLAYDLSLQQVMDAIAANNRNAGGW------YLDRGAEQLVIRGMGWVGSG 242

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                     P        +   ++    F    R           +G       +   I
Sbjct: 243 QQGLGDIAAIPLKEVDGTQVRVSDVAKVEFGGEIRQGALTMTRRDANGEPEALGEVVAGI 302

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              +   +   TI+      A ++          V          + S       +    
Sbjct: 303 VLKRMGANTKATIDGIKEREARIQQALPDGVQFEVFYDQADLVEKAVSTVVTALLLAFVF 362

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           ++IVL + ++  +   +   SI L++ L L  ++ LG +  L S+ G+ + IG+ VD ++
Sbjct: 363 IVIVLALFLMNLRATALVLLSIPLSIGLALLAMASLGMSANLMSLGGLAVAIGMLVDGSV 422

Query: 433 LVNERIREENRKNQSVFCS-------LDMGFSRAYSTIFDSNITALIATVVLFFFGG--- 482
           ++ E I +   + +    S       +          +F +    L+  + LF F G   
Sbjct: 423 VMVENIFKHLSRKEGSHDSQGGIALRVKDAAQEVARPVFFAASIILVVFLPLFAFEGVEA 482

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 AI++ L++  ++  A+ +V A+  F+ R    +  +             +    
Sbjct: 483 KMFVPMAISIMLAMTAAVLVALIVVPALAGFLFRNGVEEKPNKLMQWLEARYRTLLGKAM 542

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
              +    G   LF++      F       +  +G + L V        S + + L+  Q
Sbjct: 543 QARKVVVGGAVGLFALALATTPFIGTEFVPVLEEGTLALRVTL---APSSSLDTALDVGQ 599

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             +     F      L R+         +      +   +  +    +  N   +  KI 
Sbjct: 600 KLEKEIMAFPEVTYALSRVGRAEIGGDPEPVSNVEIYIGLKPVDEWESASNRLELQEKIQ 659

Query: 663 REL 665
           ++L
Sbjct: 660 KKL 662



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 89/252 (35%), Gaps = 10/252 (3%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            + +  L   +          GE    + L+    ++ A    ++  + +I + +P    
Sbjct: 275 EIRQGALTMTRRDANGEPEALGEVVAGIVLKRMGANTKATIDGIKEREARIQQALPDGVQ 334

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
                    +  + +   +  ++++ + ++I + +           + ++ L I   L  
Sbjct: 335 FEVFYDQADLVEKAVSTVVTALLLAFVFIVIVLALFLMNLRATALVLLSIPLSIGLALLA 394

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL----YTTSISFRDLIDKSIN 766
            A  G+  NL ++  +   IG  V+  VV+ + + K++      + +       +  +  
Sbjct: 395 MASLGMSANLMSLGGLAVAIGMLVDGSVVMVENIFKHLSRKEGSHDSQGGIALRVKDAAQ 454

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFI 823
           E      + +    +  LP+  + G     F   AI +   +  A   ++ +   +  F+
Sbjct: 455 EVARPVFFAASIILVVFLPLFAFEGVEAKMFVPMAISIMLAMTAAVLVALIVVPALAGFL 514

Query: 824 YDW--RAKNARI 833
           +      K  ++
Sbjct: 515 FRNGVEEKPNKL 526



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 86/236 (36%), Gaps = 9/236 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++  + +     Q    +    V +Q         + V ++ +   +E+   +       
Sbjct: 810  DVAEVSLVSGPPQISRDDVQRRVVIQANVAGRDMGSVVADIQQAIDSEVDLPAGYSVDIG 869

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-- 714
               +  +   ++  + V ++   + + ++  F    A  A+  + + +    G  AL   
Sbjct: 870  GQYENQQRAQQRLAMVVPVAVGLIALLLYFAFG-SVAQAALILVNVPLALIGGILALAIS 928

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ +    +TL G +V + VV+ + +           +    I +     L   + 
Sbjct: 929  GQYLSVPSSVGFITLFGVAVLNGVVMVEAIN---HRLRDGEALETAIFEGAVSRLRPVLM 985

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            T++ + + ++PM +    G  V    A+ +  G+V A + ++ +   +       +
Sbjct: 986  TALTSMLGLIPMLLATGVGSEVQRPLAVVIVGGLVSATALTLLVLPSLYGVFSRGK 1041


>gi|188995876|ref|YP_001930128.1| cation efflux system protein [Porphyromonas gingivalis ATCC 33277]
 gi|188595556|dbj|BAG34531.1| cation efflux system protein [Porphyromonas gingivalis ATCC 33277]
          Length = 1039

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 77/610 (12%), Positives = 170/610 (27%), Gaps = 50/610 (8%)

Query: 3   NNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           NN   +++   ++  +G   A         +D FP       +                 
Sbjct: 11  NNRLTILVASVLLMLVGTYTA-----SNMEVDVFPDLNAPTVV---------VMTEATGM 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   +          S     + + + F            V+  L  
Sbjct: 57  APEEVERLVTFPVETAVNGATDVRRVRSSSTTGFSIVWVEFDWGTDIYRARQIVSEKLAV 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +  K  L   +     +++     D       +           ++       
Sbjct: 117 VGADLPDNVGKPTLGPQSSILGEVMIIGLTADST--SLQDLRTLADWTIRPRLLSIGGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       + +     +P R++    T A++    V   N          +  +      
Sbjct: 175 QVTVLGGDIKEYQILLNPERMKHYGITLAEVRAA-VDQMNRNASGGVLYEYGNEYIICGL 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L  +     G  L                 +   +        V    +G     +    
Sbjct: 234 LSTNDAAALGKTL-----------------VKSLDDIPIMLESVAEVRVGNKAPKLGLAS 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I    A  +   T      LA + +A    +K++    R       S S 
Sbjct: 277 ERGQSAVLVTITKQPATSTLELTERLDRSLADLQKALPSDVKVSTDIFRQERFIENSISN 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +         V+IVLF+ ++  +  +++  +I L+++ +   L L+G T+   S+ G+ 
Sbjct: 337 VRKALYEGGIFVVIVLFIFLMNARATIISLVTIPLSLVASFLTLKLMGLTINTMSLGGMA 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFC--------SLDMGFSRAYSTIFDSNITALIA 473
           + IG  VD  I+  E + +  R+N+             +          I +S    + +
Sbjct: 397 IAIGSLVDDAIVDVENVYKRLRENRMKPREEQDTVLNVIFEASKEVRMPILNSTFIIIAS 456

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDIN 526
            V LFF     G  +    I   +++L S   A+++   +  +++  +K         I 
Sbjct: 457 FVPLFFLSGMEGRMLVPLGIAFIIALLASTIVALTLTPVLCSYLLAKRKKDDSPEKEPIV 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +       +   +    +     I              +G   + V   
Sbjct: 517 AKKLKGWYGQALQWSLGNTKKVLLMTGGVLVAALIVFFTLGRSFLPPFNEGSFTINVSTL 576

Query: 587 RPVDLSVVRS 596
             + L     
Sbjct: 577 PGISLEESDR 586



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/261 (11%), Positives = 84/261 (32%), Gaps = 13/261 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V +   + + +       +                 V +      + +   + E + + +
Sbjct: 247 VKSLDDIPIMLESVAEVRVGNKAPKLGLASERGQSAVLVTITKQPATSTLELTERLDRSL 306

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGI----VGVI-ISAIAMLIYIWIRFKWYFALGAI 697
            ++                    I   I      +       +++           + ++
Sbjct: 307 ADLQKALPSDVKVSTDIFRQERFIENSISNVRKALYEGGIFVVIVLFIFLMNARATIISL 366

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN-MKLYT 752
            T+ L +  +     L G+  N  ++  +   IG  V+D +V    VY R+R+N MK   
Sbjct: 367 VTIPLSLVASFLTLKLMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRMKPRE 426

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAA 809
              +  ++I ++  E     + ++     S +P+    G    ++    I     ++ + 
Sbjct: 427 EQDTVLNVIFEASKEVRMPILNSTFIIIASFVPLFFLSGMEGRMLVPLGIAFIIALLAST 486

Query: 810 SSSIFIAAPILLFIYDWRAKN 830
             ++ +   +  ++   R K+
Sbjct: 487 IVALTLTPVLCSYLLAKRKKD 507



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/242 (14%), Positives = 96/242 (39%), Gaps = 11/242 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + +  +              +  + +         ++ V ++ ++   +I          
Sbjct: 793  AYVADIVSASGPNTINRENVSRKIVVSANVAGRDLRSVVNDIQERIDADITLPEGYHIEY 852

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +  +   R  +V  + S + + + ++ +F+   +  A++ L L +    G FA+F 
Sbjct: 853  GGQFESEQAASRTLLVTSVFSILVIFLLLFNQFR-SLSQSAVSLLNLPLALIGGVFAIFF 911

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   ++ A+   ++L G +  + +++  R      L    +S  + + +   + L   +
Sbjct: 912  TGGIISIPAIIGFISLFGIATRNGMLLISRYND---LQQAGLSPYESVLRGSLDRLNPIL 968

Query: 774  YTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             T++ + ++++P+A+     G+ I S  A  +  G+  +   + FI  PI+  + D   +
Sbjct: 969  MTALTSGLALIPLALGGELPGNEIQSPMAKVILGGLFSSTILNAFIV-PIMYLLTDKSYR 1027

Query: 830  NA 831
              
Sbjct: 1028 ER 1029


>gi|330825304|ref|YP_004388607.1| CzcA family heavy metal efflux pump [Alicycliphilus denitrificans
           K601]
 gi|329310676|gb|AEB85091.1| heavy metal efflux pump, CzcA family [Alicycliphilus denitrificans
           K601]
          Length = 1059

 Score =  128 bits (321), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/571 (12%), Positives = 163/571 (28%), Gaps = 45/571 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+  +++    +   G+   L     ++ LD  P       I          +      
Sbjct: 11  RNSFLVLLATLFVIVAGVFAVL-----RTPLDALPDLSDVQVI---------VYTEYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLSVPKSKVVRGFSFFGASFVYIIFEDDTDIYWARSRVLEYLNF 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +S++       +    T        +    D       E           Q+  +    
Sbjct: 117 ASSRMPKGVTPQIGPDATGVGWVYQYALIAKD---RTLAELRTLQDWYLRYQLTKAHGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +       DP +LR      AK+S      N    G +  +         + 
Sbjct: 174 EVASVGGFVQTYQITVDPVKLRAYGIPLAKVSQVVRDSNRDVGGRVVEMAETEYMVRGKG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I  + +               V+++ DE           +             
Sbjct: 234 YLRGAADIENLVVKAEKGTPVLIRDIARVELAPDERRGLTELNGEGE------------- 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +    I         + AG                   +   
Sbjct: 281 ------VVSGIAMARYGQNALEVIHNLKEKITEVSAGLPQGVSIQAVYDRSDLIHRAIDT 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T    + +V +V  + +++ +  LVA   + + V+++   + LLG    L S+ GI 
Sbjct: 335 LKRTLIEESLIVALVCMVFLMHIRSALVAILMLPVGVLISFIAMRLLGMNSNLMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + IG  VD+ I++ E   +          ++    ++          +F S +   ++ +
Sbjct: 395 IAIGAMVDAAIVMIENAHKHLERLPPEHNSKQRVEAMIAACKEVGPALFFSLLIITVSFL 454

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   S+  +   ++++V  +M+  IR + M            
Sbjct: 455 PVFTLESQEGRLFSPLAFTKTFSMAGAALLSVTLVPVLMMIFIRGRIMPESRNPVNRFLI 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICL 563
            +   I    MR +   + I+++    S   
Sbjct: 515 WVYRPIIAGVMRWKKVTIAIALVVLGVSFYP 545



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 18/166 (10%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + M+  + IR     AL AI  L + +  +     L G+  NL ++  +   IG
Sbjct: 343 SLIVALVCMVFLMHIR----SALVAILMLPVGVLISFIAMRLLGMNSNLMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFR-------DLIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+     +N   +   +          + +  +  E      ++ +   +S L
Sbjct: 399 AMVDAAIVMI----ENAHKHLERLPPEHNSKQRVEAMIAACKEVGPALFFSLLIITVSFL 454

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           P+          F   A    F +  AA  S+ +   +++     R
Sbjct: 455 PVFTLESQEGRLFSPLAFTKTFSMAGAALLSVTLVPVLMMIFIRGR 500



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 53/159 (33%), Gaps = 13/159 (8%)

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----- 741
              +    L  + ++   +   +      G   ++      + L G +    VV+      
Sbjct: 884  FRRLTETLIVMLSVPFALVGGVWLMWWLGYNLSVAVAVGFIALAGVAAETGVVMLIYLDH 943

Query: 742  --DRMRKNMKLYTTS---ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSV 793
              + +++  +            + + +   E +   + T +A    +LP+      G  V
Sbjct: 944  AWEEIKEKRRSEGKEPGVGDLYEAVMEGAVERVRPKMMTVVAIMAGLLPIMWGTGTGSEV 1003

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +   A PM  G++ +   ++ +   +   +  +  +  R
Sbjct: 1004 MSRIAAPMVGGMISSTVLTLAVIPALYALVKQFELRRQR 1042


>gi|323972198|gb|EGB67410.1| CzcA family protein heavy metal efflux pump protein [Escherichia
           coli TA007]
          Length = 1047

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 91/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R     AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFRRGGE-ALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|332883833|gb|EGK04113.1| hypothetical protein HMPREF9456_01141 [Dysgonomonas mossii DSM
           22836]
          Length = 1032

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 74/653 (11%), Positives = 188/653 (28%), Gaps = 55/653 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  +V++ +++  +G L    N      +D FP                   +V+  + 
Sbjct: 11  NNRLIVLIGAVLLLVGGLYTAKN----MEIDVFPDLNAPT-------------VVIMTEA 53

Query: 63  DDFVNGFLQMYSD-ELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           +   +  ++      + + +           S     + + + F            VT  
Sbjct: 54  NGMASEEVERLVSFPIETAVNGATDVRRVRSSSTTGFSVVWVEFDWGTDIYKARQIVTEK 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           L  +   L  +  +  L   +     +++     D      ++           ++  + 
Sbjct: 114 LATLGDALPENIGQPTLGPQSSILGEVMIIGLTADST--SLLDLRTIADWTIRPRLLSTG 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q       + +     DP R++    T  ++       N +  G +           
Sbjct: 172 GVAQVTVIGGDIKEYQILLDPGRMKHYGVTLDEVLQVTRNMNQNASGGVLY--------- 222

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                    E    ++                 I           +V    IG     + 
Sbjct: 223 ---------EYGNEYIVRGVLQSADVKEIGKAVIKKVGESPILISDVADVKIGAKTPKLG 273

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                T   +   I       +   + +    +A + +     +K++    R       S
Sbjct: 274 VASEKTKSAVLLTITKQPNTNTIELSEKLDASIADLQKGLPTDVKISTDIFRQERFINNS 333

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +  + +    +  V+IVL + ++ G+   ++  ++ L+++ ++  L L+G T+   S+ 
Sbjct: 334 INNVQKSLYEGSIFVVIVLLLFLMNGRTTFISLMALPLSLLTSILALKLMGLTINTMSLG 393

Query: 419 GIVLGIGLAVDSNILVNERIREE--------NRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           G+ + IG  VD  I+  E + +           + QSV   +          I +S +  
Sbjct: 394 GMAIAIGSLVDDAIIDVENVFKHLRENRKKPKEEQQSVLTIVFEASKEVRMPILNSTLII 453

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI---D 524
           + +   LFF     G  +    I   +++  S   A+++   +  +++   K   I    
Sbjct: 454 VASFTPLFFLSGMEGRMLVPLGIAFIVALFASTIIALTVTPVLCSYLLANNKKDKIEKES 513

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +  +    +    +     + +       +L                    +G   + + 
Sbjct: 514 VFVMKLKAIYEKSLHWALEKQKIVLGITGLLLISAIAISFTFGRNFLPPFNEGSFTVTLN 573

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
               + L          +   +S            R +         +  +E 
Sbjct: 574 TLPGISLEESDKVAGMAEEAILSVPEIQTVGRKTGRAELDEHSFGVNSSEIEA 626



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 79/212 (37%), Gaps = 10/212 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S      +  ++K +   V +ST    +      S   ++K +    I  + +L+   + 
Sbjct: 299 SEKLDASIADLQKGLPTDVKISTDIFRQERFINNSINNVQKSLYEGSIFVVIVLLLFLMN 358

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDR 743
            +  F   ++  L L +  ++    L G+  N  ++  +   IG  V+D ++    V+  
Sbjct: 359 GRTTF--ISLMALPLSLLTSILALKLMGLTINTMSLGGMAIAIGSLVDDAIIDVENVFKH 416

Query: 744 MRKNMKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAI 799
           +R+N K       S   ++ ++  E     + +++    S  P+    G    ++    I
Sbjct: 417 LRENRKKPKEEQQSVLTIVFEASKEVRMPILNSTLIIVASFTPLFFLSGMEGRMLVPLGI 476

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                +  +   ++ +   +  ++     K+ 
Sbjct: 477 AFIVALFASTIIALTVTPVLCSYLLANNKKDK 508



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 98/270 (36%), Gaps = 13/270 (4%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            NY    +    L + AN         +++ S    +   +     K  +           
Sbjct: 769  NYKDQAEKIRNLMIDANGLKVPFAYIADISSSTGPNTINRENAQRKIVVSANVAGRDLRS 828

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
                + E +   I            +    + + +++   ++  + + + + + ++ +F+
Sbjct: 829  VVNEIQENLDNNIQLPEGYHIEYGGQFESEQAASQIL---LIASVFAILIIFLLLFNQFR 885

Query: 690  WYFALGAITTLILDITKTLGFFALFGI--EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                  A+  L L +    G +A+     E ++ A+   ++L G +  + +++       
Sbjct: 886  -SVTQSAVILLNLPLALIGGVYAILFTSGEISIPAIIGFISLFGIATRNGILLMAHYND- 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAF 803
              L     S    I +   + L   + T++++ ++++P+AV     G+ I S  A  +  
Sbjct: 944  --LGNKGYSVNKSILQGSLDRLNPILMTALSSGLALIPLAVQGSLPGNEIQSPMAKVILG 1001

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            G++ +   +++I   +   +   +     I
Sbjct: 1002 GLLTSTMLNMYIVPIVYRMLKRRKTLKEEI 1031


>gi|257466165|ref|ZP_05630476.1| acriflavin resistance protein B [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 1016

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 70/617 (11%), Positives = 166/617 (26%), Gaps = 43/617 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++   +  IG++               P+                        
Sbjct: 9   RRPVATSMIVISVIFIGIITMFSMRTELLPNMEIPTVT--------------IRSSWSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    + +   ++       +     + I + F      +    ++   +  
Sbjct: 55  VAEDVETQITKKIEAILPNVEGIDKIESTSSYGSSSIVVKFNFGTNADQKVTEIQREVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    +         S+ +             E +  +      +        
Sbjct: 115 ILNDLPKDASNPVAKKIQAGIGSLSMVVMMSAPNK---AELTTFVDEYLKPKFESLPGAA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         QL  + D  +L     +  ++                          N  
Sbjct: 172 QVDVYGNAAKQLQIQVDSEKLAAYNLSPVELYNLISSS-------------------NTV 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L    ++     L                 I                N+        +  
Sbjct: 213 LPIGTLQTGTKQLVVRYMGEMQSIEDFENMII--SSNGNTLRLKDISNVVLTREDESNKG 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            ++       +       S     E A      L+          +          S + 
Sbjct: 271 YISGKEAITILLQKSTDGSTVDLTEKANKALRELKGIMPKGTEYNIIMDTSVDIKSSITG 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L  IVLF+ +   +   +   ++ ++VI T A L   G TL L S+ G+ 
Sbjct: 331 VSSNALQGLILATIVLFVFLRNIRATFLITLALPISVIFTFAFLKATGTTLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +G+G+  D++++V + I     +  S    + + G +   ++IF S +T ++  + + F 
Sbjct: 391 IGVGMLTDNSVVVIDNIYRHITELHSPVLEASENGSTEVSASIFASALTTMLVFIPILFI 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R  A  +  S + ++  A++++  +   ++      S D     +       
Sbjct: 451 PGFAREIFRDMAYAIIFSNVAALIVALTLIPMLASKLMSNDVKISSDGKIFHKMREKYLK 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGVLANRPVDLSVVRS 596
           +    +  R   + I++   + SI +      N      +G   +       +DL     
Sbjct: 511 LISYALSHRKLTIFITLGIFVFSIFVSSFLKFNFMPKQDQGRYSITAELPNGLDLEKSDK 570

Query: 597 NLESLQIGDISFQNFDG 613
             + ++       N   
Sbjct: 571 IAKQIEAFVKEEPNTKT 587



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 88/244 (36%), Gaps = 7/244 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D   ++    +  +      +   +            + +    V +   +   ++    
Sbjct: 761  DNKFIKVGDVADIVYGEGSLSIQKKDRIYSVTISANDNGLGVRGVQQAFIEAFKKVNQSD 820

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
             I  +     +     + +    ++I+   +   I  +F+ +      I ++ L +    
Sbjct: 821  AISYSWGGESENMNATMSQLSSALLIAIFLIYALIAAQFESFLLPFVVIGSIPLALIGVF 880

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                + G   N+  +  ++ L G  VN+ +V+ D +     +    +S  + I ++ +  
Sbjct: 881  LGLFILGQAMNMMTMIGIILLAGIVVNNAIVLIDFI---QLMRVRGMSRTEAIIEAGSTR 937

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + T+    + ++PMA+    G  +    ++ + FG+ V+   ++ +   +   + D
Sbjct: 938  LRPILMTTATTVLGMIPMALGFGEGSEIYKGMSLAVIFGLSVSTLLTLIVIPILYSLMDD 997

Query: 826  WRAK 829
            +  +
Sbjct: 998  FIMR 1001



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/358 (8%), Positives = 101/358 (28%), Gaps = 9/358 (2%)

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           I ++ +        +    T     L   F ++     + ++    K+++    +     
Sbjct: 135 IGSLSMVVMMSAPNKAELTTFVDEYLKPKFESLPGAAQVDVYGNAAKQLQIQVDSEKLAA 194

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           + +        + +    + I  L +     ++   G    I+    + +    N     
Sbjct: 195 YNLSPVELYNLISSSNTVLPIGTLQTGTKQLVVRYMGEMQSIEDFENMIISSNGNTLRLK 254

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            +    L      +  + +       L++            +  + +++    +   +  
Sbjct: 255 DISNVVLTREDESNKGYISGKEAITILLQKSTDGSTVDLTEKANKALRELKGIMPKGTEY 314

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    I   +       +    +A ++                 L + +  T  F 
Sbjct: 315 NIIMDTSVDIKSSITGVSSNALQGLILATIVLFVFLRNIRATFLITLALPISVIFTFAFL 374

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   NL ++  +   +G   ++ VVV D +     +        +  +    E    
Sbjct: 375 KATGTTLNLISLMGLSIGVGMLTDNSVVVIDNI--YRHITELHSPVLEASENGSTEVSAS 432

Query: 772 SVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +++   +  +P+    G    +    A      I+ +  +++ +A  ++  +   
Sbjct: 433 IFASALTTMLVFIPILFIPGFAREIFRDMAYA----IIFSNVAALIVALTLIPMLASK 486


>gi|331672073|ref|ZP_08372869.1| cation efflux system protein CusA [Escherichia coli TA280]
 gi|331071062|gb|EGI42421.1| cation efflux system protein CusA [Escherichia coli TA280]
          Length = 1047

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  +    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTNKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|56460741|ref|YP_156022.1| metal efflux system membrane component (silver efflux pump related)
           [Idiomarina loihiensis L2TR]
 gi|56179751|gb|AAV82473.1| Metal efflux system membrane component (silver efflux pump related)
           [Idiomarina loihiensis L2TR]
          Length = 1065

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 87/690 (12%), Positives = 195/690 (28%), Gaps = 57/690 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF---- 65
           L  ++    + IA    +P+  LD FP                   + +  +        
Sbjct: 14  LLLVLALFSISIASFFVIPKLNLDAFPDVTN-------------VQVTVNTEAPGLAATE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +    + +   L          +   + IT+ F +S         V   LQ     
Sbjct: 61  VEQLITYPIESVMYALPDVKEVRSISKTGLSGITVVFDESVDIYFARQLVFERLQAAKEL 120

Query: 126 LNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +        +   ++                   ++E            +   E   + L
Sbjct: 121 IPEGVGTPEMGPNSSGLGQVYQYLLLAEPGSGVSSMELRSLNDYVVKLLLMPVEGITEVL 180

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                + Q     +P++L     T   +                G  ++        +  
Sbjct: 181 SFGGEVKQYQVNLNPAKLLSYDLTQQDVMGAVNKN-----NGNVGGWYMPRGQEQLVIRG 235

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
                SG            KT   V              E+ +  +   ++  +DG V  
Sbjct: 236 TGWLDSGKKGLQQIRQIPLKTVDGVSVTLGQVADVEIGSEIRQGAV--SMSRKVDGEVNQ 293

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
              +   I   +   +   TI+       +++                     + S    
Sbjct: 294 LGEVVSGIVLKRMGSNTKATIDGIKKRIPLIQQALPEGVTFEPYYDQADLIQKAVSTVAY 353

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           +  I    ++ VL + +L  +   +   SI +++ + L ++S +G +  L S+ GI + I
Sbjct: 354 SLLIAFVFIIAVLALFLLNIRATFLVLLSIPVSIAIALMVMSAMGMSANLMSLGGIAVAI 413

Query: 425 GLAVDSNILVNERIREENRKNQSVFC--------------------------SLDMGFSR 458
           G+ VD ++++ E I +   +  S                              +    + 
Sbjct: 414 GMLVDGSVVMVENIFKHLSRPDSEHQDDAEQRTEHRDPDPQAAKLDSHGIKLRVKEAANE 473

Query: 459 AYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
               +F + +  L+  + LF F G         AI++ L+I+ ++F AI +V A+  +  
Sbjct: 474 VARPVFFAAMIILVVFMPLFSFQGVEAKLFEPMAISIMLAIISAVFVAIMVVPALASYFF 533

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
                   +             +++     +       +LF    + +            
Sbjct: 534 SRGIKPRENKLLKPLDNGYKRLLSVALRSKKAVITLAGVLFVGALVLVPRLGTEFAPELE 593

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G I + V        S + + LE     +    +F      L R+         +    
Sbjct: 594 EGTINIRVTL---APSSNLETALEVAPKLEKILMSFPETTYALSRIGRAEVGGDPEPISN 650

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISREL 665
             +   +      +T  +   +  K+  +L
Sbjct: 651 IEIYVGLKPQSEWTTASDRYALQEKMEAKL 680



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 90/281 (32%), Gaps = 30/281 (10%)

Query: 581 LGVLANRPVDLS---VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
           + V   +  D+     +R    S+        N  GE    + L+    ++ A    ++ 
Sbjct: 260 VSVTLGQVADVEIGSEIRQGAVSMSRKVDGEVNQLGEVVSGIVLKRMGSNTKATIDGIKK 319

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGA 696
               I + +P             + ++ +      ++I+ + ++  +             
Sbjct: 320 RIPLIQQALPEGVTFEPYYDQADLIQKAVSTVAYSLLIAFVFIIAVLALFLLNIRATFLV 379

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK---------- 746
           + ++ + I   L   +  G+  NL ++  +   IG  V+  VV+ + + K          
Sbjct: 380 LLSIPVSIAIALMVMSAMGMSANLMSLGGIAVAIGMLVDGSVVMVENIFKHLSRPDSEHQ 439

Query: 747 ---NMKLYTTSISFRDL----------IDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
                +        +            + ++ NE      + +M   +  +P+  + G  
Sbjct: 440 DDAEQRTEHRDPDPQAAKLDSHGIKLRVKEAANEVARPVFFAAMIILVVFMPLFSFQGVE 499

Query: 794 IGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              F   AI +   I+ A   +I +   +  + +    K  
Sbjct: 500 AKLFEPMAISIMLAIISAVFVAIMVVPALASYFFSRGIKPR 540



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 84/239 (35%), Gaps = 9/239 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +  + I     Q    +    V +Q         + V ++ K    ++   +       
Sbjct: 828  EVAHVAIESGPPQIRRDDVQRRVVIQSNVQGRDMGSVVADIRKAIDEKVDLPTGYSVDIG 887

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-- 714
               +  +    +  + V IS   + + ++  F        +  + + +    G  AL+  
Sbjct: 888  GQFESQQRAQERLSIVVPISLALIALLLYFAFG-TMGQAMLILVNVPLAVIGGIVALYVS 946

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ +    +TL G +V + VV+ + +    +  T   +  D +       L   + 
Sbjct: 947  GQYLSVPSAVGFITLFGVAVLNGVVLVESIN---QRITDGHAVNDAVFDGAWSRLRPVLM 1003

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            T++ + + ++PM      G  +    A  +  G+V A   ++ I   +  +    + K+
Sbjct: 1004 TAITSALGLIPMLFATGAGAEIQRPLATVIVGGLVSATLLTLVILPVLYPWFSKQKIKD 1062


>gi|119382917|ref|YP_913973.1| acriflavin resistance protein [Paracoccus denitrificans PD1222]
 gi|119372684|gb|ABL68277.1| acriflavin resistance protein [Paracoccus denitrificans PD1222]
          Length = 1033

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/518 (13%), Positives = 149/518 (28%), Gaps = 40/518 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +  ++   +   G         P+  LD++P       + +                 
Sbjct: 11  PVFATMMMVALVVFGAFS-----YPRLGLDQYPDVDVPIVVVM---------TTYPGATP 56

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    +E  + +        +  + ++ +   F           +V   L  + 
Sbjct: 57  ETVETEISRPIEEAINTVGGLDQVTSTSYEGRSVVVAEFRLDVAGPAAVQEVRDKLAPLE 116

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +    D  K ++      +  I+     I        E +    ++ I Q+       Q 
Sbjct: 117 AGFPADVDKPVVSRFNPSDQPIL--SVAISGPRFDVAELTALAEQRIIRQLTTISGVGQV 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                 + Q+    D +RLR L     ++                         G     
Sbjct: 175 TLVGGRMKQVDIVIDETRLRALSVGIDEVLAALR--------------------GGNQNR 214

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
                ++G    G             +D+     G    +      +    A      + 
Sbjct: 215 PAGNLVTGFSDLGIQVQGRIDEPADFLDMIVARRGGGPVYLRDVATVTDGAADAESLALY 274

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN-IVEERNVGADLGSDSIY 362
                           +     +        L        +   V          S +  
Sbjct: 275 DGRPALALDIVKVQDANTVQVADEVIARLDRLNEELAESGVTLSVVTDASLPIRESVAQV 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T    A L + ++F+ +   +  ++   ++ + +I TLA++S+LG TL   S+  + L
Sbjct: 335 QATLIEGAALAVAIVFLFLNSWRSTVITGLTLPIAMIGTLAVISVLGFTLNTLSLLALTL 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG+ VD  I+V E I       +S   +   G       +  +  T +   + + F   
Sbjct: 395 SIGILVDDAIVVRENITRHLHMGKSHLQAALDGTGEIALAVLATTATIVAVFLPVAFMDG 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
             G     F +T+  ++LIS+F A ++   +       
Sbjct: 455 IVGRFFYEFGVTVSAAVLISLFVAFTLDPMLSSVWYDP 492



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 77/217 (35%), Gaps = 7/217 (3%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
                              ++  I  +      +          +E +   I  ++++   
Sbjct: 813  VQISADISGRVLGDATADLEALIATLDLPQGYRIQFGGDSSTMQETMGHMITALLMAVTF 872

Query: 680  MLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + I +  +F  +   L  +  L L +   L    + G   N+ ++   + L+G    + +
Sbjct: 873  IYIVLASQFGNFLQPLAIMAALPLSLIGVLLGLMVAGSTINMFSLIGFIMLMGLVTKNGI 932

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            ++ D   +  +     +   + +  +        V T++A  + ++P+A+    GG+   
Sbjct: 933  LLIDFANRERR---RGLPLNEALVNAGAIRFQPIVMTTLAMIVGMIPLALAVGGGGAQRA 989

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              A  +  G++ +   ++ +   IL  I  +  + AR
Sbjct: 990  PMAHAVIGGLISSTILTLIVVPVILSCIDGFWKRVAR 1026



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 60/157 (38%), Gaps = 8/157 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  +A+A+ I       W   +    TL + +  TL   ++ G   N  ++ A+   IG 
Sbjct: 339 IEGAALAVAIVFLFLNSWRSTVITGLTLPIAMIGTLAVISVLGFTLNTLSLLALTLSIGI 398

Query: 733 SVNDKVVVYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            V+D +VV    R+N+  +     S          E     + T+       LP+A   G
Sbjct: 399 LVDDAIVV----RENITRHLHMGKSHLQAALDGTGEIALAVLATTATIVAVFLPVAFMDG 454

Query: 792 SVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            V      F + ++  ++++   +  +   +    YD
Sbjct: 455 IVGRFFYEFGVTVSAAVLISLFVAFTLDPMLSSVWYD 491


>gi|323164012|gb|EFZ49820.1| cation efflux system protein cusA [Shigella sonnei 53G]
          Length = 1047

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 173/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I +       L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIASVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|253774447|ref|YP_003037278.1| heavy metal efflux pump, CzcA family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160651|ref|YP_003043759.1| copper/silver efflux system, membrane component [Escherichia coli B
           str. REL606]
 gi|242376346|emb|CAQ31042.1| cusA, subunit of copper/silver transporting efflux system
           [Escherichia coli BL21(DE3)]
 gi|253325491|gb|ACT30093.1| heavy metal efflux pump, CzcA family [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972552|gb|ACT38223.1| copper/silver efflux system, membrane component [Escherichia coli B
           str. REL606]
 gi|253976746|gb|ACT42416.1| copper/silver efflux system, membrane component [Escherichia coli
           BL21(DE3)]
          Length = 1047

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIMVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|332142072|ref|YP_004427810.1| AcrB/AcrD/AcrF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552094|gb|AEA98812.1| AcrB/AcrD/AcrF family protein [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 1122

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/532 (12%), Positives = 146/532 (27%), Gaps = 59/532 (11%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++      +       +P+                     +  
Sbjct: 9   KRPVAVSMFIFAVLLFGMVSLGRLSVNLLPDLSYPTLT--------------IRTDYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K       + R  Q+ + LSFA     +  + +V   L  
Sbjct: 55  APGEVEQLVSKPIEEAIGVVKGVRKVTSTSRAGQSDVVLSFAWGTDMDFASLEVREKLDV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA-----IEQSMEIIRQRIDQIGI 176
           +  +L +D +K  L+        ++          S           +   +Q    +  
Sbjct: 115 L--QLPLDIEKPRLLRFNPSLDPVIKLGLTAQSDASSLSIAQMKRLRLYGEQQVKRSLES 172

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E          +  ++    D  +  QL     +++      N +  G           
Sbjct: 173 VEGVAAVRVGGGLENEIHILIDQRKASQLSIPITRITERVRAENINAAGGRIDNAAQAFL 232

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  E   +I  + +                         R         +      
Sbjct: 233 VRTLNQFETLNDIENLFIGRFE--------------------GRNIQLKDVATVENAYKD 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                        +     +   +     +      + +        +            
Sbjct: 273 RDVVTRFNGSEGIEIAIYKEGDANAVNVAQKVAKRLSEVNDNLPANYMLSEIYDQSVFIK 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +    K    +   L ++VL++ +      ++   SI ++VI T  L+     +L + S
Sbjct: 333 QAIDNVKSAAVMGGVLAMLVLYLFLKDFWATIIISVSIPVSVIATFNLMYANDISLNMMS 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM---------------GFSRAYS 461
           + GI L +GL VD++I+V E I    +   S                      G      
Sbjct: 393 LGGIALAVGLLVDNSIVVLENIDRHKKLKASASDEAVAGEGVASAASDSAASEGTKEVSG 452

Query: 462 TIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
            I  S +T +   V L F     G   +  A+T+  ++  S+  A++++ AM
Sbjct: 453 AIIASTLTTMAVFVPLIFVEGIAGQLFKDQALTVSFALAASLVVALTLIPAM 504



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/262 (10%), Positives = 91/262 (34%), Gaps = 24/262 (9%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + L  V +   + +  D+  +    E   +   +    ++V   + +     ++ + +P
Sbjct: 257 NIQLKDVATVENAYKDRDVVTRFNGSEGIEIAIYKEGDANAVNVAQKVAKRLSEVNDNLP 316

Query: 648 LSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            + + +         ++ I       V+   +AML+       ++  +    ++ + +  
Sbjct: 317 ANYMLSEIYDQSVFIKQAIDNVKSAAVMGGVLAMLVLYLFLKDFWATIIISVSIPVSVIA 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID---- 762
           T        I  N+ ++  +   +G  V++ +VV + +  +      + +  + +     
Sbjct: 377 TFNLMYANDISLNMMSLGGIALAVGLLVDNSIVVLENI--DRHKKLKASASDEAVAGEGV 434

Query: 763 ----------KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
                     +   E  G  + +++      +P+       G +    A+ ++F +    
Sbjct: 435 ASAASDSAASEGTKEVSGAIIASTLTTMAVFVPLIFVEGIAGQLFKDQALTVSFALAA-- 492

Query: 810 SSSIFIAAPILLFIYDWRAKNA 831
             S+ +A  ++  +   R K  
Sbjct: 493 --SLVVALTLIPAMAHKRKKQQ 512



 Score = 48.1 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 66/197 (33%), Gaps = 5/197 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V L             + +    I       ++  +     +  +   R     + 
Sbjct: 881  GQQRVALVSANLAKGKLDEAVAIANTVIDGTQLPLSLSASVTGQSEDMQSSFRSLQFALA 940

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++   + + +  +F+     L  +  + L    ++    L     N+     ++ L G  
Sbjct: 941  LAVFMVYLVMASQFESLLHPLLILFAVPLAGAGSVYGLWLTNTPLNVVVFIGLIMLCGIV 1000

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            VN+ +V+ DR+    +L    +     I ++    L   V T++   + +LPMA +G   
Sbjct: 1001 VNNAIVLVDRIN---QLRRQGLEKNVAIMQAAKTRLRPIVMTTLTTVLGLLPMA-FGLGE 1056

Query: 794  IGSFAIPMAFGIVVAAS 810
                  PMA  ++    
Sbjct: 1057 GAEIRTPMAITVIYGLL 1073


>gi|268318004|ref|YP_003291723.1| heavy metal efflux pump, CzcA family [Rhodothermus marinus DSM
           4252]
 gi|262335538|gb|ACY49335.1| heavy metal efflux pump, CzcA family [Rhodothermus marinus DSM
           4252]
          Length = 1073

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 68/565 (12%), Positives = 155/565 (27%), Gaps = 46/565 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MRN   +++L  ++  +G+   L        +D  P            D++         
Sbjct: 10  MRNRQLVLVLAMLLAALGIWATL-----NIPIDAIPDIS---------DVQVVIRTEYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          +              + + + F D         +V  +L 
Sbjct: 56  QAPQIVEDQVTYPLATAMLAVPGARTVRGYSMFGTSFVYVIFEDGTDMYWARSRVLEYLN 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    +  +    T        S            +           ++      
Sbjct: 116 QVAGSLPEGARPAIGPDATSVGWIFEYS-LMDTTGRHDLADLRTLQDFFLKYELQSIPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +       + Q     DP +L       + +       N      +  +         +
Sbjct: 175 SEVATVGGFVKQYQVVVDPQKLLAYGIPLSHVRMAIQRSNREVGARLLELGEREFIVRGR 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   ++                            G     +        P       
Sbjct: 235 GYLQGIDDL-------------------RKIPLKARDGTVITLDDVATIRHGPEIRRGIA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +   I   +   +    IE        L+A         +E         +  
Sbjct: 276 DRNGEGEVVGGIVLMRYGENALRVIERVKARLEELKASLPEGVTINIEYDRSRLIRDAVR 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V +++F+ +L+ +   VA  ++ L  +  L ++ LLG    + S+ GI
Sbjct: 336 TVTIKLWQQLAVVALIVFVFLLHVRSAFVALVTVPLGALTALLIMYLLGVNANIMSLGGI 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSV---------FCSLDMGFSRAYSTIFDSNITAL 471
            + IG+ VD+++++ E   +   + +           F  L         ++F S +   
Sbjct: 396 AVAIGVMVDASLVMVENAHKHLERVRQQGTRLSAAERFQVLLAAAREVGPSMFFSLLIVT 455

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G   R  A+T   S+  +   A++++ A+M+  +R +          
Sbjct: 456 VSYLPVFALQQVEGRLFRPLAMTTTFSMAAASVLAVTLIPALMVIFVRGRIRTEHQNPVA 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGIS 553
             F  I   +    +R  +  V  S
Sbjct: 516 RFFAWIYRPVIRYTLRRPWRVVFGS 540



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/171 (17%), Positives = 70/171 (40%), Gaps = 12/171 (7%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +V + I  + +L+ I  R      L  + TL +     +   ++ G   ++ A    + +
Sbjct: 885  LVPLTIGIVFLLLLIHFR-SLRETLLLMATLPMAAIGAIWLMSVLGFNMSVAAAVGYIAV 943

Query: 730  IGYSVNDKVVV-------YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
             G +    VV+        +R R+  +L +     +  +++  +  +   + T   + I 
Sbjct: 944  AGLAAETGVVMQAFLSDTIERYRREGRLSSIGA-LQAALEEGASRRVRPLLMTVSTSLIG 1002

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +LP+      G  V+   A PM  G+  AA+ ++ +   + + I+  R + 
Sbjct: 1003 LLPVMFGTETGAEVMKRLAAPMVGGLFSAAALTLIVIPALNMIIHRARLRR 1053



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 80/210 (38%), Gaps = 12/210 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 LE +K  + E V ++   +   +     R +  K    + + A+ + +++    
Sbjct: 301 ERVKARLEELKASLPEGVTINIEYDRSRLIRDAVRTVTIKLWQQLAVVALIVFVFLL--- 357

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR--- 745
               A  A+ T+ L     L    L G+  N+ ++  +   IG  V+  +V+ +      
Sbjct: 358 HVRSAFVALVTVPLGALTALLIMYLLGVNANIMSLGGIAVAIGVMVDASLVMVENAHKHL 417

Query: 746 KNMKLYTTSISFRD--LIDKSINETLGRSVYTSMAAF----ISVLPMAVWGGSVIGSFAI 799
           + ++   T +S  +   +  +    +G S++ S+       + V  +    G +    A+
Sbjct: 418 ERVRQQGTRLSAAERFQVLLAAAREVGPSMFFSLLIVTVSYLPVFALQQVEGRLFRPLAM 477

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              F +  A+  ++ +   +++     R +
Sbjct: 478 TTTFSMAAASVLAVTLIPALMVIFVRGRIR 507


>gi|206602553|gb|EDZ39034.1| Putative heavy metal efflux protein, CzcA [Leptospirillum sp. Group
           II '5-way CG']
          Length = 1060

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 83/606 (13%), Positives = 166/606 (27%), Gaps = 42/606 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W++ +  +I   G +      L QS LD  P       I                 
Sbjct: 11  QRRYWVLGICLLILAWGSIS-----LYQSPLDAIPDLSDTQVI---------VKASFAGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + I + F +         +V  +L  
Sbjct: 57  PPSVVENQVTYPLTTAFLTIPGVRHVRGYSDFGNSLIYILFKEGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L      +L    T                                 ++       
Sbjct: 117 VEGRLPQGVTASLGPDATGLGWIYEY-ALVDKTHRYDLSRLRSIQDWFLKFELQSIHGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      ++ +   E DP +L       +K+       N    G +  +   +    ++ 
Sbjct: 176 QVASVGGMVKEFQVEVDPRKLLGYHIPLSKVEKAIRNSNGDVGGSVVDMGESQFMVRSRG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                            G          ++     + L   
Sbjct: 236 YIRSLEDI-------------------RNIPLSLGAGGVPVRLSDVASVHLGPELRLGIA 276

Query: 302 VLTAPV-INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L     +   I   +   +    IE        L+    P    +         L S  
Sbjct: 277 ELDGKGEVAGGIVISRGGTNALKIIEAVKKKLRDLKPMLPPGVEIVTTYDRSRLILKSIR 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    +  V +V  + +   +  LVA  S+ + +     L++  G T  + S+ GI
Sbjct: 337 TLLEKLLEESIAVSLVCLLFLSRLRSSLVAILSLPVGIFAAFVLMARQGLTANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVL 477
            + IG+ VD+ I++ E + +   ++     S +     A     ++F S +   ++ + +
Sbjct: 397 AVSIGVMVDAAIVMIENMHKHRERSDGSETSWETAIRSAQEVGPSLFFSLLVITVSFLPI 456

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G   +  A T   SI IS   +I++V  +M F+IR K     D         +
Sbjct: 457 FALQDQEGRLFKPLAFTKTYSIAISAGLSITLVPVLMGFLIRGKIKPEEDNVINRILVFL 516

Query: 535 PDCIAIQFMRARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
              +    +R R   +       +   I L           ++G +         V +  
Sbjct: 517 YRPVIGWVLRHRKLTIAFACACLATSVIPLSHLGTEFMPPLYEGDLLYMPTLTPGVSVGE 576

Query: 594 VRSNLE 599
               L+
Sbjct: 577 SAHLLQ 582



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 93/281 (33%), Gaps = 7/281 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S         +     +       G   + V  +    + +       +   D   +   
Sbjct: 227 SQFMVRSRGYIRSLEDIRNIPLSLGAGGVPVRLSDVASVHLGPELRLGIAELDGKGEVAG 286

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G                 + ++ ++       +  ++T   + ++   I   L +     
Sbjct: 287 GIVISRGGTNALKIIEAVKKKLRDLKPMLPPGVEIVTTYDRSRLILKSIRTLLEKLLEES 346

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +S +     +    +   +L AI +L + I       A  G+  N+ ++  +   IG 
Sbjct: 347 IAVSLVC----LLFLSRLRSSLVAILSLPVGIFAAFVLMARQGLTANIMSLGGIAVSIGV 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+  +V+ + M K+ +    S +  +   +S  E      ++ +   +S LP+      
Sbjct: 403 MVDAAIVMIENMHKHRERSDGSETSWETAIRSAQEVGPSLFFSLLVITVSFLPIFALQDQ 462

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G +    A    + I ++A  SI +   ++ F+   + K 
Sbjct: 463 EGRLFKPLAFTKTYSIAISAGLSITLVPVLMGFLIRGKIKP 503


>gi|307721239|ref|YP_003892379.1| acriflavin resistance protein [Sulfurimonas autotrophica DSM 16294]
 gi|306979332|gb|ADN09367.1| acriflavin resistance protein [Sulfurimonas autotrophica DSM 16294]
          Length = 1013

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 75/667 (11%), Positives = 180/667 (26%), Gaps = 43/667 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++    L+I             +P+                   +    E D +   
Sbjct: 10  IATLMYVFTLVIFGYMSFKSMPSALYPNVDFPIVT---------VKTIYPGVEADTIESQ 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E  S +        +     + + + F   R  +   + V   +  V   L  D
Sbjct: 61  VTEKIEEAISRIGGVDSITSTSSDGVSVVMVKFFLERNIDEATNDVRDKVSAV--ILPKD 118

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            +  L+         ++     +           +    +    +               
Sbjct: 119 AQTPLVSKLDIGGAPVI--NVFLTAKKDSLQNLMVFADEKVKPALQKINGVGAINIIGYK 176

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             ++    D  +L +   T  +++      N    G     +        +       ++
Sbjct: 177 DREIKIFPDIYKLNKFAITVKELNDIVARENVKIGGGKLITKTKEIILKTKADALSVKQL 236

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   +   L+              
Sbjct: 237 QNIIIKND------------------------LRLKDLATVVDSLSDAKSYSSYNGVPGV 272

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  +  +    +         L+  +         +      + S    K      
Sbjct: 273 MLEVQKISGTNTIDIVNRVKATMPQLKKMAGDKYGVATLQDTTPFIIHSLEDVKFDLIYG 332

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A L +I++F  +      +V+  SI +++  T+AL++L+G  L   ++ G+ L IG+ +D
Sbjct: 333 AFLAVIIIFFFLRNFTITIVSALSIPISIFGTIALMNLMGFDLNKMTLIGLTLAIGIIID 392

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV---LFFFGGGAVR 486
             I+V E I ++       F +   G       I   +   L   +    +    G    
Sbjct: 393 DAIVVLENIYKKMEAGMDKFEAALYGVKEMAFAILAISAMLLAVFLPVAHMSGIVGKFFE 452

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            FA+T+G +++IS   A+S + ++   ++   + K  +I       L     A      R
Sbjct: 453 SFAMTVGFAVIISYTVAMSFMPSLSARVLHKGESKFYNITEPIFQLLDRMYAATLKFVLR 512

Query: 547 F---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           F     V +   F                 + K   ++ + A   + L  +    + ++ 
Sbjct: 513 FKVLTLVFVIAAFVASLSLFPKIGMDFIPKEDKAEFEIKLRAPAGISLDEMIRESKVVEN 572

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
              + +N       +     Q  +       L    K+      +      ++       
Sbjct: 573 LVRADKNVVFTTLSVGYNSVQEKNKALIYVKLTPKGKREKNQEEIIQSFREKLKPFSKEM 632

Query: 664 ELIRKGI 670
            +    I
Sbjct: 633 FITAAAI 639



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 66/170 (38%), Gaps = 14/170 (8%)

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             + +S I M I + I ++     +  +  L L I   +    L  + F+L  +   + L+
Sbjct: 844  ALGLSIILMFIILAILYESLIQPIIIMVALPLSIIGVMIALYLTHLHFSLFVMIGFMLLM 903

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G    + V++ D   +              + ++  + L   + T++A   ++LP+A+  
Sbjct: 904  GMVGKNAVLLVDFANE---AVAKGKDANAALLEAGEKRLRPILMTTVAMIFAMLPLALSD 960

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAA-------PILLFIYDWRAKN 830
              G       AI +  G++ +   ++ +         PI  ++  W  K 
Sbjct: 961  SLGSETKAPMAIAIIGGLLSSMVLTLLVVPVIYRMINPIDRWLRKWYEKK 1010



 Score = 48.1 bits (112), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/193 (15%), Positives = 67/193 (34%), Gaps = 6/193 (3%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V+            RV   + +          +   +   P I   L       +  + +
Sbjct: 276 VQKISGTNTIDIVNRVKATMPQLKKMAGDKYGVATLQDTTPFIIHSLEDVKFDLIYGAFL 335

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
           A++I  +    +   + +  ++ + I  T+    L G + N   +  +   IG  ++D +
Sbjct: 336 AVIIIFFFLRNFTITIVSALSIPISIFGTIALMNLMGFDLNKMTLIGLTLAIGIIIDDAI 395

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG--- 795
           VV + +    K     +   +     + E     +  S       LP+A   G V     
Sbjct: 396 VVLENI---YKKMEAGMDKFEAALYGVKEMAFAILAISAMLLAVFLPVAHMSGIVGKFFE 452

Query: 796 SFAIPMAFGIVVA 808
           SFA+ + F ++++
Sbjct: 453 SFAMTVGFAVIIS 465


>gi|300313900|ref|YP_003777992.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
 gi|300076685|gb|ADJ66084.1| cation/multidrug efflux pump protein [Herbaspirillum seropedicae
           SmR1]
          Length = 1063

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 60/570 (10%), Positives = 147/570 (25%), Gaps = 48/570 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  +I       A P  L     D FP                   ++   
Sbjct: 8   LRRPYTFIVMALLIVL-----ATPLTLKNMATDIFPEINIPV-----------VSIIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           + +      +               +              + I + F      +    +V
Sbjct: 50  NYNGLSAQEMGQRIAAQNERGLTTVVSDIEHIESQSLAGVSVIKVFFQPKANIQTAIAQV 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +Q    +L       L++  +   I ++    +   +    +  +   ++    Q+ 
Sbjct: 110 VASVQTQVRQLPPGITPPLVIKYSASSIPVMQLALSSPTLPEQTVFDA--AVQTLRPQLV 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + D   L+        +       N               
Sbjct: 168 TIPGVAVPYPYGGKSRLISVDLDTQALQARGLAPIDVVNAINTQNLILPSGTAKFGATEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S       E    +                     ++          +     N+    +
Sbjct: 228 SVKINGSPEAVAGL--------------------NELPVRTTNGATIYLKDVANVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    ++    L                        
Sbjct: 268 PQTNVVRQDGARGVLLSILKNGGASTLDIVDNLRKLLPTAAQTLPEDIKITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             + +       I AGL   ++ + +   +  L+   +I L+++  + +L+ LG TL L 
Sbjct: 328 KAAVTGVISEALIAAGLTAAMVLLFLGNWRSTLIIGLTIPLSIMAAILILAALGETLNLM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD  I+  E I       + +  ++ +G        F + +   I  V
Sbjct: 388 TLGGLALSVGILVDQAIVTIENIERHLHLGKPLHDAIIVGAGEIGVPAFVATLCICIVFV 447

Query: 476 VLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++  S   + ++V  +++ ++            L +  
Sbjct: 448 PMFFLSGVARFLFVPLAEAVVFAMAASYLLSRTLVPTLVMLLMGSHGQVDSAKQSLLQRL 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSIC 562
                   + +R  +  V  S+L       
Sbjct: 508 YRAFDNRFERVRHGYTLVLSSLLAHRRRFA 537



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 77/195 (39%), Gaps = 7/195 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               ++L    + + E + ++ + +  +        +I + ++   ++A  +L+++    
Sbjct: 298 DNLRKLLPTAAQTLPEDIKITPLFDQSVFVKAAVTGVISEALIAAGLTAAMVLLFLG--- 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    T+ L I   +   A  G   NL  +  +   +G  V+  +V  + + +++
Sbjct: 355 NWRSTLIIGLTIPLSIMAAILILAALGETLNLMTLGGLALSVGILVDQAIVTIENIERHL 414

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            L        D I     E    +   ++   I  +PM    G     F +P+A  +V A
Sbjct: 415 HL---GKPLHDAIIVGAGEIGVPAFVATLCICIVFVPMFFLSGVARFLF-VPLAEAVVFA 470

Query: 809 ASSSIFIAAPILLFI 823
            ++S  ++  ++  +
Sbjct: 471 MAASYLLSRTLVPTL 485



 Score = 45.8 bits (106), Expect = 0.027,   Method: Composition-based stats.
 Identities = 17/126 (13%), Positives = 50/126 (39%), Gaps = 6/126 (4%)

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                + G   ++ A+   +  +G +  + +++    R   +      +      ++ +  
Sbjct: 926  WMLFITGTTLSVPALTGAIMTMGVATANSILIVAFAR---QRREEGATPLAAALEAGSTR 982

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   + T++A  I ++PMA+    G          +  G+++A  S++F    +   ++ 
Sbjct: 983  IRPVLMTALAMIIGMIPMALGLGEGAEQNAPLGRAVIGGLMLATVSTLFFVPVVFAGVHQ 1042

Query: 826  WRAKNA 831
              A+ A
Sbjct: 1043 RLARRA 1048


>gi|315503190|ref|YP_004082077.1| protein-export membrane protein secd [Micromonospora sp. L5]
 gi|315409809|gb|ADU07926.1| protein-export membrane protein SecD [Micromonospora sp. L5]
          Length = 626

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 116/600 (19%), Positives = 217/600 (36%), Gaps = 91/600 (15%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE----VDEDDF 65
           L  +     +L  L  F        +   +      LGLDL GG+ L LE    VD    
Sbjct: 7   LAVLGFIFVVLYLLV-FFSGGASGGWKDRLEP---RLGLDLVGGTRLTLEATNTVDGKPP 62

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK-ITLSFAD-SRFKENIADKVTLFLQGVN 123
               L+     + S +   G+    +    N+ I +S    +R   ++ +   L  + V 
Sbjct: 63  TADNLEEARQIIESRVNAYGVAEAEVVTEGNRNIVISLPGQNRDLTDVGEAAELRFRKVL 122

Query: 124 ------------SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI--------------- 156
                       +             +         S                       
Sbjct: 123 KATDGSGAALAPAPTPSATPSGAATPSGSASPKASTSPKVSGSPSAGGQGGMAPTPSASA 182

Query: 157 ------------------SHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQD 198
                             +  + QS+E  R+ ++Q   + +     G             
Sbjct: 183 SATPSASPSAAAPSPSASAEPVPQSIEQQRKAVEQKVGAAAWAAASGLQAPADLTTDPSL 242

Query: 199 PSRLRQLLGTTAK---------------MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             +L+     T +               ++  ++    +        + +    G +YL+
Sbjct: 243 ADKLKPFGTLTPQEIAVLPVEMQFNVPTITCAQLDKRPAASIKDEKQKAVACESGAKYLL 302

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI------------- 290
           +    +         +    +T   VV ++F   G  ++  +TR+               
Sbjct: 303 DVAKVLGTDV--KNASAQLDQTSSWVVSLNFTGSGQEKWTALTREAFTNEGQACDQTALG 360

Query: 291 --GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
             GK    V+    + +    Q + +G +QI+G+F  + A  LA+ LR G+LP+     E
Sbjct: 361 QDGKCRVAVVLDNEIVSSPEIQGVLTGDSQITGSFDNKAANALASQLRYGALPVTFEPQE 420

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
           ++NV A LG   +  G  A   G++L++++    Y   G V   S+ L+ +L    L +L
Sbjct: 421 QQNVTATLGDSHLKAGLLAAGIGMLLVIIYSFFYYRLLGSVIFLSLVLSALLVFGALVVL 480

Query: 409 ----GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF 464
               G TLTL  IAG+++ +G+A DS ++  ER+++E R+ +S   ++   + RA  TI 
Sbjct: 481 GRSIGFTLTLAGIAGMIVSLGVAADSFVIYFERLKDEIREGRSPRSAVPRAWIRARRTII 540

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            +N   L++ VVL+    GAV+GFA  +GL+ ++ +         +M    R +   S  
Sbjct: 541 SANAITLMSAVVLYIVSVGAVKGFAFALGLATVLDLVVVFLFRHPIMTMFARTRAFLSPR 600



 Score = 97.5 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 27/227 (11%), Positives = 76/227 (33%), Gaps = 8/227 (3%)

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           D    +    +  L       G    +       + +   +      Q  + V   +   
Sbjct: 372 DNEIVSSPEIQGVLTGDSQITGSFDNKAANALASQLRYGALPVTFEPQEQQNVTATLGDS 431

Query: 665 LIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG----IEFNL 720
            ++ G++   I  + ++IY +  ++   ++    +L+L      G   + G        L
Sbjct: 432 HLKAGLLAAGIGMLLVIIYSFFYYRLLGSVI-FLSLVLSALLVFGALVVLGRSIGFTLTL 490

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +A ++  +G + +  V+ ++R++  ++      S R  + ++        +  +    
Sbjct: 491 AGIAGMIVSLGVAADSFVIYFERLKDEIRE---GRSPRSAVPRAWIRARRTIISANAITL 547

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +S + + +     +  FA  +    V+          PI+      R
Sbjct: 548 MSAVVLYIVSVGAVKGFAFALGLATVLDLVVVFLFRHPIMTMFARTR 594


>gi|148269212|ref|YP_001243672.1| protein-export membrane protein SecD [Thermotoga petrophila RKU-1]
 gi|147734756|gb|ABQ46096.1| protein-export membrane protein SecD [Thermotoga petrophila RKU-1]
          Length = 465

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 80/177 (45%), Gaps = 4/177 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           ++  V P + R++I   +   II  I +L Y+ I ++    + A   LI +    LG  A
Sbjct: 281 SSGWVAPLLGRDVIDASLKAGIIGLILVLAYMIIYYR-TMGIVADLALIYNTVLLLGVMA 339

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                  L  +A ++  IG +V+  V++Y+R+++ M+L       +  I    + +L   
Sbjct: 340 AGKFILTLPGIAGIILTIGTTVDGNVIIYERIKEEMRL---GKPVKTSIAAGFDRSLSTI 396

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +  ++   ++ L +  +G   I  FAI +  G++ +   ++  +  +L  +  +   
Sbjct: 397 LDANITTILTGLILYYFGTGTIKGFAITLIIGVLGSIFVNLVFSRLLLDALARFIKP 453



 Score =  118 bits (295), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 115/480 (23%), Positives = 197/480 (41%), Gaps = 71/480 (14%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVN---GFLQMYSDELRSFLKKEGIGVFSM----RQI 94
           + I LGLD++GG+ +   V+           +      LR+ L   G    ++    R  
Sbjct: 32  SNIRLGLDIKGGARIEYMVEVLQETENPSDVVDDVWTVLRNRLDAAGYTEAAVNKVLRDN 91

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
           +  I +    +         +        ++                     +    + +
Sbjct: 92  KYYIVVEIPGATDTVQAEKLIGSTGVLYFAQ---------------------VLDEYLGE 130

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
             S   E S+E  R+    +   +                                K   
Sbjct: 131 DPSKVPELSLEARRENAVWLKGRDGKWY--------------------------LVKKEI 164

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
                   +   +   R   ++   +Y  +   E+S  +++                   
Sbjct: 165 MGRKDLVLEAPRIVYARPEVETRTGRYGYKVSFELSKEYVDVFKRITQALYVP------- 217

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
                         +  K LA+VLD  V  A  +   I  GKA+I+GNF++E A  LAA+
Sbjct: 218 ----------EGTYDPKKRLAIVLDNVVQFAGQVVAIITDGKAEITGNFSLEEAKQLAAI 267

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           LR+G+LP +L       V   LG D I     A + GL+L++ +MI+ Y   G+VAD ++
Sbjct: 268 LRSGALPARLVKTSSGWVAPLLGRDVIDASLKAGIIGLILVLAYMIIYYRTMGIVADLAL 327

Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
             N +L L +++     LTLP IAGI+L IG  VD N+++ ERI+EE R  + V  S+  
Sbjct: 328 IYNTVLLLGVMAAGKFILTLPGIAGIILTIGTTVDGNVIIYERIKEEMRLGKPVKTSIAA 387

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GF R+ STI D+NIT ++  ++L++FG G ++GFAIT+ + +L S+F  +   R ++  +
Sbjct: 388 GFDRSLSTILDANITTILTGLILYYFGTGTIKGFAITLIIGVLGSIFVNLVFSRLLLDAL 447


>gi|292491748|ref|YP_003527187.1| heavy metal efflux pump, CzcA family [Nitrosococcus halophilus Nc4]
 gi|291580343|gb|ADE14800.1| heavy metal efflux pump, CzcA family [Nitrosococcus halophilus Nc4]
          Length = 1104

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 174/683 (25%), Gaps = 45/683 (6%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
              L  ++    L       L Q+ LD  P       I                   D V
Sbjct: 30  RRPLLILVTITALAFGGYRALTQAPLDAIPDLSDVQVI---------VFTEWPGRSPDLV 80

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +                         + + + F +         +V  +L    + L
Sbjct: 81  EDQITYPLTTTLLAAPGVNYVRGQSFFGLSFVYVIFDEGVDMYWARSRVLEYLNTATADL 140

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                  L    T                     +            +   E   +    
Sbjct: 141 PEGVAPTLGPDATGVGWVYQY-ALRDTGSRHSLDKLRSLQDFNLRYALEAVEGVAEVAAV 199

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                +     DP++L  L     ++       NN   G +  V         +  V+  
Sbjct: 200 GGYQREYQISLDPNKLASLGIPLKRVVEAVRDSNNDVGGRILEVAGHEQFIRGRGYVQST 259

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            ++                    V +   + G              P        +  A 
Sbjct: 260 ADLE------------------KVVLKTTKDGVPITIAEVGTVALGPALQRGQAELDGAG 301

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
           +    I   +   +    IE      A ++ G       +           +    + T 
Sbjct: 302 ITVGGIVVMRYGENALAVIERVKQRLAEIQPGLPEGVEIVPVYDRATLIKQAIDTLQKTL 361

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V +V+ + + + +  LVA  ++ + V+L    +S  G T  + S+ GI + IG 
Sbjct: 362 IEEMLIVSLVIVVFLRHVRSTLVAVVTLPVAVLLAFIPMSYQGLTANIMSLGGIAVAIGA 421

Query: 427 AVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            VD+ I++ E   +              + +S    +         +IF S +   ++ +
Sbjct: 422 MVDAAIVMIENTHKRLHRWQEEDAPPEERAKSRIQVIIEAMQEVGPSIFFSLLIITVSFL 481

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G   +  A T   S+  +   ++++V A+ +++IR +              
Sbjct: 482 PVFALEGTEGRLFKPLAFTKTYSMAFAALLSVTLVPALAVWLIRGRIQADRSQLNQWLVA 541

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                + +             ++                    +G I     A   + ++
Sbjct: 542 AYRPIVRLAVRWRWAVVGIAVVILVGTVPIFRSLGHEFMPPLNEGSILYMPTALPGMSIT 601

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                L+     D   + F    +   ++      +      +      +          
Sbjct: 602 EATQTLQ---TMDRIIKAFPEVDHVFGKIGRSTSPTDPAPLSMVETVITLKPKDQWRKGL 658

Query: 653 NTEIVGPKISRELIRKGIVGVII 675
             E +  ++  +L   G+  +  
Sbjct: 659 TWEGLIQEMDAQLRFPGMPNIFW 681



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/235 (10%), Positives = 69/235 (29%), Gaps = 12/235 (5%)

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
              +   E   LV   +              + K++                 +       
Sbjct: 832  PPSIRSEDGQLVGFVFVDVKGDMGIADYVALAKQVVAEQVDIPAGYRLAWAGQFKYFERA 891

Query: 668  KGIVGVII-SAIAMLIYIWI--RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
            K  + +++ + + ++ ++    R      L  + ++   +   L        + ++    
Sbjct: 892  KAKLAILVPATVFLIFFMLFLHRGSLTETLIILFSVPFSLVGALWLLWWLDYKLSVAVGV 951

Query: 725  AVLTLIGYSVNDKVVVYD----RMRKNMKLY--TTSISFRDLIDKSINETLGRSVYTSMA 778
             ++ + G +V   +++        R+        T       I +     +   + T + 
Sbjct: 952  GLIAVAGLAVELGLLMMVYLDLTYREGKAQGQLKTRADLNAAIQEGAGRRIRPVLMTGIT 1011

Query: 779  AFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             F+ + P+      G  V+   A PM  G++ A +  + +   +       R   
Sbjct: 1012 TFMGLAPILFSTGAGADVMKRLAAPMIGGVISALAMVLVVFPAVYAIWKGRRLDR 1066



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 65/167 (38%), Gaps = 11/167 (6%)

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            I  L+ +         L A+ TL + +       +  G+  N+ ++  +   IG  V+ 
Sbjct: 366 LIVSLVIVVFLRHVRSTLVAVVTLPVAVLLAFIPMSYQGLTANIMSLGGIAVAIGAMVDA 425

Query: 737 KVVVYD----RMR----KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +V+ +    R+     ++      + S   +I +++ E      ++ +   +S LP+  
Sbjct: 426 AIVMIENTHKRLHRWQEEDAPPEERAKSRIQVIIEAMQEVGPSIFFSLLIITVSFLPVFA 485

Query: 789 WGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G+   +    A    + +  AA  S+ +   + +++   R +  R
Sbjct: 486 LEGTEGRLFKPLAFTKTYSMAFAALLSVTLVPALAVWLIRGRIQADR 532


>gi|78224319|ref|YP_386066.1| acriflavin resistance protein [Geobacter metallireducens GS-15]
 gi|78195574|gb|ABB33341.1| Acriflavin resistance protein [Geobacter metallireducens GS-15]
          Length = 1071

 Score =  128 bits (320), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 65/518 (12%), Positives = 161/518 (31%), Gaps = 27/518 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N+    ++      +G+   L         +  P  +        +D     +L +    
Sbjct: 16  NSKLTPLIVLAALLLGVYAVLVT-----PREEEPQIVVPM-----ID----VYLPMPGST 61

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   + +  +++   L          R     +T+ F      E    K+   +   
Sbjct: 62  PKEVEERVVVPFEKVMWELPGVEYVYSMSRPGMGIVTVRFLVGEDMEKSLVKLYNKVMEK 121

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L     + ++V  +  ++ I+      D+  S  + +   + R+  D++    +  +
Sbjct: 122 RTMLPPGAGEPMVVPKSIDDVPILTLTLWSDRYDSQTLRR---LGRELCDELKKGTNVAE 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +  +  QL    D +RL     +  ++                        +    +
Sbjct: 179 TRITGGLSRQLSVRLDSARLAAYSLSPLQVMGAIQ-----GGNARLSSGSFDAGNRELLV 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA-RRFFEVTRDNIGKPLAVVLDGR 301
                  S         +        + D++    G       V+           + G 
Sbjct: 234 DTGGFIASADDARRLVVSARDGRPVYLSDVATVVDGPEEPRDYVSFGLGPAADHKGISGN 293

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +        + +   +  +  E        L+   +P  + +   RN G      + 
Sbjct: 294 RAESYPAVTLSVAKRKGANATWVAEDLLKRVEFLKGKLIPSDVQVTVTRNYGETAKEKNN 353

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  +A + + +L  + +  + G VA  +I + + LT+ + +L+G TL   ++  ++
Sbjct: 354 ELLFHMFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMLVFNLIGYTLNRITLFALI 413

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
             IG+ VD  I+V E I             +         +    +    + + + + F 
Sbjct: 414 FSIGILVDDAIVVVENIHRYFTTTRFKPLEAAIRAVDEIGNPTVLATFAVIASILPMGFV 473

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           G   G  +R   +   +++L+SMF A  +       ++
Sbjct: 474 GGLMGPYMRPIPVGASMAMLLSMFIAFMVTPYFAYRLM 511



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 66/156 (42%), Gaps = 5/156 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++AI++ I I +   W     A   + + +  T+  F L G   N   + A++  IG 
Sbjct: 359 MFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMLVFNLIGYTLNRITLFALIFSIGI 418

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + + +     TT     +   ++++E    +V  + A   S+LPM   GG 
Sbjct: 419 LVDDAIVVVENIHRYFT--TTRFKPLEAAIRAVDEIGNPTVLATFAVIASILPMGFVGGL 476

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +   +    +  +  ++++   +  +       +  
Sbjct: 477 MGPYMRPIPVGASMAMLLSMFIAFMVTPYFAYRLMK 512



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/249 (14%), Positives = 86/249 (34%), Gaps = 6/249 (2%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +    D ++ R NL+S+               + +    +  D +       + ++  T+
Sbjct: 823  STGIEDQTLYRKNLKSVVYVTGDVAGTIEAPVYAILKMQKEIDKIELPGGYRIEQRAATQ 882

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILD 703
                            I+ E+ R   +      I + L+ +     +   L  +  + L 
Sbjct: 883  PWSEERPGIKWDGEWHITYEVFRDLGLAFGAVMILIYLLVVAWFRDFTTPLVIMAPIPLT 942

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +   L   ALFG  F  T++   + L G  V + +++ D     +K     +   + I +
Sbjct: 943  LIGILPGHALFGAFFTATSMIGFIALAGIIVRNSIILID--FAELKR-REGLPLDEAIIE 999

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            +        + T+ A  +    +      +    A+ M FG + + + S      +   +
Sbjct: 1000 AGAVRFRPMLLTAAAVVVGSFVIVF--DPIFQGLALAMMFGEIASTTLSRVTIPILYYMV 1057

Query: 824  YDWRAKNAR 832
             DW+ ++ +
Sbjct: 1058 EDWKERHRK 1066


>gi|154493330|ref|ZP_02032650.1| hypothetical protein PARMER_02667 [Parabacteroides merdae ATCC
           43184]
 gi|154086540|gb|EDN85585.1| hypothetical protein PARMER_02667 [Parabacteroides merdae ATCC
           43184]
          Length = 1035

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 86/672 (12%), Positives = 198/672 (29%), Gaps = 22/672 (3%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   + +L   I  +G +        Q  +D  P         L ++L+ G     E   
Sbjct: 11  NPVTICMLVLAILLLGKIS-----YDQLAVDLLPDLNNP---RLFIELKAG-----ERPP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           ++    F++              +    +R    +IT+ +   +  +     +   +   
Sbjct: 58  EEIEKQFVKNMESMAIRQSDVIQVS-SVIRAGSARITVEYTWKKDMDEAFLDLQKAMNPF 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                 D  +  +      +  +VL   +   +     E          +++   E    
Sbjct: 117 AQN--KDITELKITQHDPNQSPVVLIGLSHRSIT-DMAELRKVAESYIRNELISLEGVAD 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   +  L    DP +L     T   +S      N S  G       L+    +  L
Sbjct: 174 VTLSGDEVSTLMIRTDPYKLDAFKLTINDLSSKIEANNQSVSGGRVSELGLQYLVKSSSL 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
              + +   + +       +         +S   M     F      +        +   
Sbjct: 234 FATESDFENLIVGYKPVAAEATASGTSGAVSTSSMDKAPIFLREVATVSFENDRPENIVR 293

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +            + + +    ++      A++       +   V          +    
Sbjct: 294 INGKRSIGLSVYKEMRFNTVKVVDGVIRRLAVIEQALPGYRF-QVITNQGTFIKNAIGEV 352

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K +  +   L +++LF+ +      L+   +I ++++ T  L+     TL + ++ G+ L
Sbjct: 353 KSSAVLGIILAVVILFVFLRRLGTTLIVSLAIPISIVATFNLMFFNHLTLNIMTLGGLAL 412

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
           G G+ VD+ I+V E I     K  ++  +   G S     +  S +T ++  + + +  G
Sbjct: 413 GAGMLVDNAIVVIESIFRNQEKGMTIREAAIAGTSEVAGAVIASTLTTIVVFLPIVYLHG 472

Query: 483 GA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
            +    +  A T+  S++ S+F AI ++  +   I  ++   +           I     
Sbjct: 473 ASGELFKDQAWTVTFSLVSSLFVAILVIPMLYDRITGWQDRGAGGGTRGGNGIRITGYSP 532

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-KGGIQLGVLANRPVDLSVVRSNL 598
           +     R   V I     +  I  L    +        G      +   P    + R+  
Sbjct: 533 LLRTLLRRRWVVIGCALMLLVIAGLLVPFIGTEFMPRAGSKAFSAVIKLPEGTPLERTAS 592

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
               + D+           +         S       E        + P   +   E++ 
Sbjct: 593 AVGNLEDLMHTISQDSLCTIYSHVGSGSGSENDIFEGENTAVMKVILSPSCPVPPEEVMA 652

Query: 659 PKISRELIRKGI 670
             +      +G+
Sbjct: 653 QFVQATEDTEGL 664



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/190 (15%), Positives = 67/190 (35%), Gaps = 10/190 (5%)

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             I + +P    Q     G  I   +       V+   +A++I      +    L     
Sbjct: 324 AVIEQALPGYRFQVITNQGTFIKNAIGEVKSSAVLGIILAVVILFVFLRRLGTTLIVSLA 383

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + + I  T        +  N+  +  +    G  V++ +VV + +    +     ++ R+
Sbjct: 384 IPISIVATFNLMFFNHLTLNIMTLGGLALGAGMLVDNAIVVIESI---FRNQEKGMTIRE 440

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
                 +E  G  + +++   +  LP+       G +    A      +  +  SS+F+A
Sbjct: 441 AAIAGTSEVAGAVIASTLTTIVVFLPIVYLHGASGELFKDQAWT----VTFSLVSSLFVA 496

Query: 817 APILLFIYDW 826
             ++  +YD 
Sbjct: 497 ILVIPMLYDR 506



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 98/221 (44%), Gaps = 7/221 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +N + ++        +  +V + ++  + +I   +    T     ++ +E +   +  +
Sbjct: 818  GQNRISKVTANLDVGYSLDKVADEIRFAVKDIDLPANYLITVTGEEEMRQESMNSLMFAL 877

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             +S I + + +  +F+        + T+ L +   +  F L G   N+  V  ++ L+G 
Sbjct: 878  ALSVILVYMVLASQFESLLHPFTILLTIPLAVVGAILLFFLTGTTINMMGVIGIVMLVGI 937

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG- 790
            +VN+ +++ DR+    +L  + +   D I +S  + +   + T++   +++LPM   +G 
Sbjct: 938  AVNNSIILVDRIN---QLKQSGMELTDAIVESGQQRIRPILMTTLTTILALLPMTFGFGE 994

Query: 791  GSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G+ + S  AI +  G+V +   S+ +   +       + + 
Sbjct: 995  GASLRSPMAIAVIGGLVTSTVMSLMVIPCVYYVFEKMKREK 1035


>gi|114776681|ref|ZP_01451724.1| Heavy metal efflux pump [Mariprofundus ferrooxydans PV-1]
 gi|114552767|gb|EAU55198.1| Heavy metal efflux pump [Mariprofundus ferrooxydans PV-1]
          Length = 1053

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/597 (12%), Positives = 164/597 (27%), Gaps = 45/597 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N  +V++++ +       A+ N      LD  P       I                  
Sbjct: 11  RNKLIVLIFTGLLIAAGAFAVKNI----SLDAIPDLSDVQVI---------VFTKYAGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +    +         + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPHSKVVRGYSFFGFSVVYIIFDDGTDMYWARSRVLEYLNYV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       L    T                     E            +       +
Sbjct: 118 AGRLPDGVTPTLGPDATGVGWVYEY-ALVDKSGKHDLAELRSIQDWYMRYALQTVRGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + Q   E DP+ L +     A++       NN   G +  +         +  
Sbjct: 177 VASIGGFVKQYQVEVDPNALAEYGIPLARVRNAIKRSNNDVGGRLIEMGETEYMVRGKGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   ++                    + +  D  G              P        +
Sbjct: 237 LKGIPDLE------------------SIPVGVDAHGTPILLRDVAHVHLGPELRRGLAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   +   +   TIE        L++G       +      G    +    
Sbjct: 279 NGEGEVAGGVIIMRYGENALTTIEAVRKKLEELKSGLPEGVEIVPTYDRGGLIERAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K        ++ +V  + +++ +  LVA  ++ L V++   L+   G    + S+ GI +
Sbjct: 339 KDKLFEEFLVISLVCMLFLMHARSALVAIITLPLGVLIAFMLMQWQGLAANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDSNITALI 472
            +G  VD  I++ E   +   +++            + ++          +F S +   +
Sbjct: 399 TLGAMVDGAIVLIENAHKHLEQSEHVKGSVLSINERWAAIGRASREVGPALFFSLLIITV 458

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + + +F      G   +  A T   ++L S   A+++V  +M + IR K M         
Sbjct: 459 SYMAIFTLEAQEGRLFKPLAFTATYAMLGSALLAVTLVPLLMGWFIRGKVMPEEKNPVNR 518

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               +        +R ++  + I+I         L   G  +      G  L +   
Sbjct: 519 ALQWMHGPTLAAALRHKWVTILIAIALLFSMAVPLAKIGSEFMPPLDEGDILYMPTT 575



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 10/151 (6%)

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM----- 744
                +  + ++   +          G   ++      + L G +    V+V   +     
Sbjct: 894  LMAPVVVMLSVPFALIGGFWLVWWLGFNLSVAVAVGFIALAGVAAEIGVLVLTFIDQEVA 953

Query: 745  --RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAI 799
              R++        + R  +   + + +     T+ A    ++P+ + GG    V+   A 
Sbjct: 954  LRREDAGGKLAPDALRAAVQAGVAKRVRPIAMTATAVIAGLVPIMLGGGTGSDVMQRIAA 1013

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            PM  G+V      + +   I   +  +R K 
Sbjct: 1014 PMIGGMVTTTLMCLVVLPVIYGMLLQFREKQ 1044



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 12/166 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++IS + ML  +  R     AL AI TL L +          G+  N+ ++  +   +G 
Sbjct: 347 LVISLVCMLFLMHAR----SALVAIITLPLGVLIAFMLMQWQGLAANIMSLGGIAITLGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLID-------KSINETLGRSVYTSMAAFISVLP 785
            V+  +V+ +   K+++           I+       ++  E      ++ +   +S + 
Sbjct: 403 MVDGAIVLIENAHKHLEQSEHVKGSVLSINERWAAIGRASREVGPALFFSLLIITVSYMA 462

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +          F  P+AF    A   S  +A  ++  +  W  +  
Sbjct: 463 IFTLEAQEGRLF-KPLAFTATYAMLGSALLAVTLVPLLMGWFIRGK 507


>gi|227884447|ref|ZP_04002252.1| RND superfamily resistance-nodulation-cell division [ligand]:proton
           (H+) antiporter [Escherichia coli 83972]
 gi|227838533|gb|EEJ48999.1| RND superfamily resistance-nodulation-cell division [ligand]:proton
           (H+) antiporter [Escherichia coli 83972]
 gi|307552446|gb|ADN45221.1| cation efflux system protein CusA [Escherichia coli ABU 83972]
          Length = 1047

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVSNRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|52079170|ref|YP_077961.1| swarming and motility protein SwrC [Bacillus licheniformis ATCC
           14580]
 gi|52784536|ref|YP_090365.1| YerP [Bacillus licheniformis ATCC 14580]
 gi|319647057|ref|ZP_08001283.1| YerP protein [Bacillus sp. BT1B_CT2]
 gi|52002381|gb|AAU22323.1| swarming and motility protein SwrC [Bacillus licheniformis ATCC
           14580]
 gi|52347038|gb|AAU39672.1| YerP [Bacillus licheniformis ATCC 14580]
 gi|317390881|gb|EFV71682.1| YerP protein [Bacillus sp. BT1B_CT2]
          Length = 1052

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 73/702 (10%), Positives = 190/702 (27%), Gaps = 55/702 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + V L ++I  +  + A  N   +S+ D     +                       
Sbjct: 10  KNKFAVWLMTIIVTVAGIYAGLNMKQESIPDVNMPYLT-------------ISTTYPGAT 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    L    +   +  +  + + + +   +  +    +    L   
Sbjct: 57  PSQVADEVTKPVEQAVQNLDGVSVVTSTSYENASSVMIEYDYEKDMDKAKTEAAEAL--A 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N  L  + K+  +   +     I+    + D         + ++    + ++   E    
Sbjct: 115 NLDLPDNAKEPSISRYSMNSFPILALSVSSD--KDDLQSLTKKVEDSLLTKLEGLEGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S + + ++       +L+Q       +       + +    ++       S      
Sbjct: 173 VQLSGQQVEEVEFSFKKDKLKQYGLDEDTVKQVIQGSDVTTPLGLYTFGKEEKSVVVSGD 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV------ 296
           ++   ++  + +  A+A             +     A+   +                  
Sbjct: 233 IDTIKDLKNMRIPAASAGGASAQAGAQSAQAAQGAQAQAGAQSAGQAQQSAGVPTVKLSD 292

Query: 297 --------VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                     +    T    +  I   KA  +    +                       
Sbjct: 293 IATIKDVKKAESISRTNGKDSIGISVIKANDANTVEVADNVKAELEQFKKDHKGFKYSST 352

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                    S           A   ++++ + +   K  L++  SI L++++ L +L+ L
Sbjct: 353 YDQAEPITESVETMLSKAIFGAIFAVVIILLFLRDIKSTLISVISIPLSLLIALLVLNQL 412

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTIFD 465
             TL + ++  + + IG  VD +I+V E I    R           +       +  I  
Sbjct: 413 DITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKALVREATKEMFMPIMS 472

Query: 466 SNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---- 518
           S I  +   + L   GG        FA+T+  ++  S+  AI++V  +   + +      
Sbjct: 473 STIVTIAVFLPLALVGGQIGELFMPFALTIVFALAASLLIAITLVPMLAHTLFKKSLTGA 532

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
            +K+ +  P          +           +   ++       +            +  
Sbjct: 533 PVKAKEHKPGVLANFYKKVLNWSLSHKWITSIIAVLMLVGSLFLVPLIGASYLPATKEKM 592

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQN--------------FDGEKNFLVRLQYQ 624
           +Q+                 +  +   +  ++                G  N  +     
Sbjct: 593 VQITYTPEPGETKKEAEKEAQKAEEILLDRKHVDTVQYTLGAGNPLMGGSSNGALFYIKY 652

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             D+    +  + V K I +       +  +      + EL 
Sbjct: 653 EEDTPDFDQEKDSVLKDIQKQSKRGEWKTQDFSSSGNNNELT 694



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 36/237 (15%), Positives = 95/237 (40%), Gaps = 1/237 (0%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + ++ ++  +   +    +   +  ++    ++V     ++   ++  +        +T
Sbjct: 293 IATIKDVKKAESISRTNGKDSIGISVIKANDANTVEVADNVKAELEQFKKDHKGFKYSST 352

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I+  +       +  +  A++I +         L ++ ++ L +   L      
Sbjct: 353 YDQAEPITESVETMLSKAIFGAIFAVVIILLFLRDIKSTLISVISIPLSLLIALLVLNQL 412

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  V+D +VV + + + M+L    +  + L+ ++  E     + 
Sbjct: 413 DITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKALVREATKEMFMPIMS 472

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++      LP+A+ GG +   F  P A  IV A ++S+ IA  ++  +     K +
Sbjct: 473 STIVTIAVFLPLALVGGQIGELFM-PFALTIVFALAASLLIAITLVPMLAHTLFKKS 528



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/261 (16%), Positives = 94/261 (36%), Gaps = 8/261 (3%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +K    L            V+    +      +          +         S   T V
Sbjct: 789  YKSVKDLEDKKITTPTGQEVKIGDVAKVKEGTTSDTISKRDGKIYADVTAEVTSDNVTAV 848

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
               V+K I +I     +            +   K  + ++ +   + + + I F    A 
Sbjct: 849  SVDVQKNIDKIDLPDNVTIDTGGVSADIEDSFTKLGLAMLAAVAIVYLVLVITFGGALAP 908

Query: 695  GAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             AI  +L   +   L    + G   +L A+  +L LIG  V + +V+ DR+   +     
Sbjct: 909  FAILFSLPFTVIGALVGLYVSGETISLNAMIGMLMLIGIVVTNAIVLIDRV---IHKEAE 965

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAA 809
             +S R+ + ++ +  L   + T++A   +++P+A+    G  VI     + +  G++ + 
Sbjct: 966  GLSTREALLEAGSTRLRPILMTAIATIGALIPLALGFEGGSQVISKGLGVTVIGGLISST 1025

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
              ++ I   +   +  +R K 
Sbjct: 1026 LLTLLIVPIVYEVLAKFRRKK 1046


>gi|323170693|gb|EFZ56343.1| cation efflux system protein cusA [Escherichia coli LT-68]
          Length = 1047

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEEQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|301023985|ref|ZP_07187705.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 69-1]
 gi|300396791|gb|EFJ80329.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 69-1]
          Length = 1047

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 171/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRAYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 94/288 (32%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRNSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +     T      +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVTFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  +++  +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEVEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|224531938|ref|ZP_03672570.1| protein-export membrane protein SecD [Borrelia valaisiana VS116]
 gi|224511403|gb|EEF81809.1| protein-export membrane protein SecD [Borrelia valaisiana VS116]
          Length = 586

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 38/211 (18%), Positives = 93/211 (44%), Gaps = 3/211 (1%)

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +  Q      +  +   +  K         I +  I+GP +  + +  GI   +++   
Sbjct: 365 NVSIQGDSFDKKEALDLALVFKTAAFPVEIKIDDLRIIGPTLGAKTVDLGIKASMLALCL 424

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + +++ + + +   +   + +I ++   L   + F     LT++A ++  +G +V+  ++
Sbjct: 425 VFLFMCVYYGFSGFVAGFSLVIYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINII 484

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +Y+R+++ ++       F +  +    +     +  ++  FI+VL + + G  VI  FA 
Sbjct: 485 IYERIKEEIREGRK---FENAFEDGFKKAFLSIMDANVTTFIAVLFLTLLGTGVIQGFAW 541

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ GIV +  SS+  +  IL FI   R   
Sbjct: 542 SLSVGIVASLFSSLIFSRFILEFIMSVRKSK 572



 Score =  117 bits (291), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 125/497 (25%), Positives = 220/497 (44%), Gaps = 53/497 (10%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITL 100
              I LGLDL GG  + + +D         +                            L
Sbjct: 133 SRIIHLGLDLSGGMGVTISLDYSSVEKKLGRS---------------------------L 165

Query: 101 SFADSRF-KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
           +FA+       I   +   +           ++                           
Sbjct: 166 TFAEKEDAIYRIMQILKDRVDRFGLTEPKIAREAGGNKIF-------------------- 205

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
           ++   E    R++ +   +  +           L  ++          +  + + +    
Sbjct: 206 LDIPGEKDESRVNTLLSGKGNLTFYVVDDESTTLLHKRILEAGSFFSISKIQANMNLPDS 265

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVE---ISGIHLNGATANFDPKTHKPVVDISFDE 276
                 ++     + D    +Y V D        G H+  A  + DP+T + +V  + D 
Sbjct: 266 KQIFPWYVKDSYGVDDESTVRYYVVDVSPENSFDGAHIKDAGVSNDPRTGRDIVVFNLDV 325

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG-NFTIETAGILAAML 335
            G+ +FF+ T+ N+GK LAVV++G++ +   I  AI  G   I G +F  + A  LA + 
Sbjct: 326 DGSEKFFKFTQKNVGKSLAVVMEGKIKSVAGIGYAITGGNVSIQGDSFDKKEALDLALVF 385

Query: 336 RAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIF 395
           +  + P+++ I + R +G  LG+ ++  G  A +  L L+ LFM V YG  G VA FS+ 
Sbjct: 386 KTAAFPVEIKIDDLRIIGPTLGAKTVDLGIKASMLALCLVFLFMCVYYGFSGFVAGFSLV 445

Query: 396 L-NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           + NV L LA+LS    TLTL SIAG++L +G+AVD NI++ ERI+EE R+ +    + + 
Sbjct: 446 IYNVFLILAILSAFNFTLTLTSIAGLILTMGMAVDINIIIYERIKEEIREGRKFENAFED 505

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GF +A+ +I D+N+T  IA + L   G G ++GFA ++ + I+ S+F+++   R ++ FI
Sbjct: 506 GFKKAFLSIMDANVTTFIAVLFLTLLGTGVIQGFAWSLSVGIVASLFSSLIFSRFILEFI 565

Query: 515 IRYKKMKSIDINPLSRF 531
           +  +K K I I+  S++
Sbjct: 566 MSVRKSKFISISWSSKY 582


>gi|15895546|ref|NP_348895.1| preprotein translocase subunit SecD [Clostridium acetobutylicum
           ATCC 824]
 gi|15025283|gb|AAK80235.1|AE007729_2 Preprotein translocase subunits SecD [Clostridium acetobutylicum
           ATCC 824]
 gi|325509694|gb|ADZ21330.1| preprotein translocase subunit SecD [Clostridium acetobutylicum EA
           2018]
          Length = 417

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 31/198 (15%), Positives = 85/198 (42%), Gaps = 4/198 (2%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G+   Q             +     +  ++ VG  +    +   I+   ++   + +++
Sbjct: 202 TGNKSIQEAQRIANIINSGALPVTLKVVQSKTVGASLGASALPNSILAGAVAICIIFLFM 261

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            + ++    L A   L+L     LG F    +   L+ +A +L  IG +V+  V++++R 
Sbjct: 262 ILVYRIP-GLMADIALVLFTVLVLGAFVAVKVTLTLSGIAGLLLTIGMAVDANVLIFERF 320

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
           ++ +K+     + R   D   +  +   + +++   IS + +   G   +  FA+ +  G
Sbjct: 321 KEELKI---GKTVRSAFDAGFHRAMSSIIDSNVTTIISGVILYALGSGEVKGFALTLVIG 377

Query: 805 IVVAASSSIFIAAPILLF 822
           ++++  ++I +   +L++
Sbjct: 378 VLISMVTAIIVTRRLLMW 395



 Score =  114 bits (283), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 224/392 (57%), Gaps = 26/392 (6%)

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
           +    + +  + + +    +V S A+ +++E++  R++++G+SE+T+ R+G+++I I +P
Sbjct: 43  IDKGLDLQGGVSVVEEIQGKVNSDAMGRTIELLNLRVNKLGVSETTVSRVGNNKIEIDVP 102

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
           G  +   +   +G T K+ F                             + K  ++G  +
Sbjct: 103 GMYNKDEVINKIGKTGKLKF--------------------------VGPDKKTVLTGSDV 136

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPS 314
             ATA  DP T++P++ +  +  G ++F + T+  +G+ +++ +D  +L+ P ++  I  
Sbjct: 137 KKATAGTDPNTNQPIISLQLNSSGTKKFADATQKFLGQKISIYMDTDLLSDPTVDSVITG 196

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
           G AQI+GN +I+ A  +A ++ +G+LP+ L +V+ + VGA LG+ ++     A    + +
Sbjct: 197 GNAQITGNKSIQEAQRIANIINSGALPVTLKVVQSKTVGASLGASALPNSILAGAVAICI 256

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           I LFMI++Y   GL+AD ++ L  +L L     +  TLTL  IAG++L IG+AVD+N+L+
Sbjct: 257 IFLFMILVYRIPGLMADIALVLFTVLVLGAFVAVKVTLTLSGIAGLLLTIGMAVDANVLI 316

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGL 494
            ER +EE +  ++V  + D GF RA S+I DSN+T +I+ V+L+  G G V+GFA+T+ +
Sbjct: 317 FERFKEELKIGKTVRSAFDAGFHRAMSSIIDSNVTTIISGVILYALGSGEVKGFALTLVI 376

Query: 495 SILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +LISM TAI + R ++++ I    +      
Sbjct: 377 GVLISMVTAIIVTRRLLMWAIDMGLINKASHF 408



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 4/118 (3%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     +     +  I  L  L +      +  +        I  GLDL+GG  +V E+ 
Sbjct: 3   KKGRSTIFFIISVLIIAGLAYLGS--TGLNVGDYRIKSFTESIDKGLDLQGGVSVVEEIQ 60

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFS-MRQIQNKITLSFADSRFKENIADKVTLF 118
                +  +    + L   + K G+   +  R   NKI +       K+ + +K+   
Sbjct: 61  GK-VNSDAMGRTIELLNLRVNKLGVSETTVSRVGNNKIEIDVPGMYNKDEVINKIGKT 117


>gi|256023812|ref|ZP_05437677.1| putative cation efflux system protein CusA [Escherichia sp.
           4_1_40B]
 gi|307137188|ref|ZP_07496544.1| putative cation efflux system protein CusA [Escherichia coli H736]
 gi|331641068|ref|ZP_08342203.1| cation efflux system protein CusA [Escherichia coli H736]
 gi|284920373|emb|CBG33434.1| cation efflux system protein [Escherichia coli 042]
 gi|315616514|gb|EFU97131.1| cation efflux system protein cusA [Escherichia coli 3431]
 gi|331037866|gb|EGI10086.1| cation efflux system protein CusA [Escherichia coli H736]
          Length = 1047

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|331651581|ref|ZP_08352600.1| cation efflux system protein CusA [Escherichia coli M718]
 gi|331049859|gb|EGI21917.1| cation efflux system protein CusA [Escherichia coli M718]
          Length = 1047

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 171/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   +  ++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLGEVKNALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  I  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVIWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|299136501|ref|ZP_07029684.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
 gi|298601016|gb|EFI57171.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
          Length = 1058

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 72/676 (10%), Positives = 184/676 (27%), Gaps = 41/676 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++   +I  +G      + +  +  D FP                          
Sbjct: 10  RPYTFIVASILILVLG-----FSAIATTPTDIFPDIDIPEVT---------VIWTYTGLP 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   + ++S+ + + +              + I +SF      +    ++   +  +
Sbjct: 56  AKEMEQRITVFSEFVMATVNDIKAIDSQTTSGASVIKISFQPQVHIDAATAQIGAAVNSI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++  +   + I+    + D +     E     + +   Q+     T+ 
Sbjct: 116 RFRMPTGVNPPWILRFSASTVPIIQLALSSDTLSES--EIYDYGLFRIRQQLSTVPGTLL 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  + D + L     T   ++      N +       V     +      
Sbjct: 174 PTPYGGVARQIMVDLDQNALLAKGLTPIDITAAINSQNVTLPSGTAKVGNSEYTVSTNSS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D + +                     D+    +     +     ++    +V  +   
Sbjct: 234 PVDALSL--------------------NDVPIKTVNGSLVYMRDVAHVRDGWSVQQNVAR 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                           +S    +      +    RA +                  +   
Sbjct: 274 ANGKPAALLSIMKTGSVSTLDIVNQVKNDVLPASRAAAPKGLKITELFDQSIFVKAAIVG 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L  +++ + +   +  L+   SI L+++ ++ +LS +G T+   ++ G+ 
Sbjct: 334 VLREGVIAASLTALMILLFLGSWRSTLIIAISIPLSILSSIIVLSAMGETMNTMTLGGLA 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD   +  E I       Q +  ++ +G S   +    S +T  I  V + F  
Sbjct: 394 LAIGILVDDATVTIENIHRHMD-GQPLREAVLIGASEIATPTLVSTLTICIVFVSVVFL- 451

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
            G  +     M L+++ +M  +  + R ++  ++ Y                +       
Sbjct: 452 TGPAKFLFTPMALAVVFAMLASYVLSRTLVPVLVNYMLGAEHTFEGHFDLETLAKPTRSF 511

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
           F R                   L T   +        + + +++   V L  +  +    
Sbjct: 512 FGRVHDRFNEGYTWVQTRYTRALETVLAHRKPAL--FVSIALMSTAFVLLPFIGRDFFPS 569

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                   +        +         V +     +   +IT I     +          
Sbjct: 570 VDAGQIKLHIRARPGTRIESTKVLFSQVEEQIRKTIPADEITLITDNIGLTPETFNYAFG 629

Query: 662 SRELIRKGIVGVIISA 677
               I      V+I+ 
Sbjct: 630 DGATISSADGEVLIAL 645



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 80/203 (39%), Gaps = 8/203 (3%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +      +  +  VL   +    + + ++ + +  I        ++R+G++   ++A+ +
Sbjct: 290 VSTLDIVNQVKNDVLPASRAAAPKGLKITELFDQSIFVKAAIVGVLREGVIAASLTALMI 349

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           L+++     W   L    ++ L I  ++   +  G   N   +  +   IG  V+D  V 
Sbjct: 350 LLFLG---SWRSTLIIAISIPLSILSSIIVLSAMGETMNTMTLGGLALAIGILVDDATVT 406

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
                +N+  +      R+ +    +E    ++ +++   I  + +    G     F  P
Sbjct: 407 I----ENIHRHMDGQPLREAVLIGASEIATPTLVSTLTICIVFVSVVFLTGPAKFLF-TP 461

Query: 801 MAFGIVVAASSSIFIAAPILLFI 823
           MA  +V A  +S  ++  ++  +
Sbjct: 462 MALAVVFAMLASYVLSRTLVPVL 484



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 61/163 (37%), Gaps = 9/163 (5%)

Query: 671  VGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +G+ ++  AML+Y+ +      W      I  L       +    L    FN+ ++   +
Sbjct: 891  LGLGLAFAAMLVYLLMVVNYQSWLDPFIIICALPGAFCGIVWALFLTQTTFNVPSLMGAI 950

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              IG +  + +++     +   L    +        +    L   + T+ A  + +LPMA
Sbjct: 951  MSIGVATANSILLVTFANE---LRAKGVDPLQSAITAGFTRLRPIIMTAFAMIVGMLPMA 1007

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    GG      A  +  G+ VA  +++F    +   I+   
Sbjct: 1008 LGMGEGGEQNAPLARAVIGGLTVATFATLFFVPLMFTLIHGKN 1050


>gi|260905543|ref|ZP_05913865.1| acriflavin resistance protein [Brevibacterium linens BL2]
          Length = 1230

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 63/547 (11%), Positives = 151/547 (27%), Gaps = 42/547 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN   + ++  +    G++ A             P A   +                E 
Sbjct: 3   LRNRALIALISVVAIIFGIIGAGALKQELFPSLENPQATVTSS--------------YEG 48

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   + L +      +     + IT+S       +++   +   + 
Sbjct: 49  ATPEAVEQEVTDPLEGALTALPEVEDMTSTSSAGSSSITVSTKYGEDSDDVVKSLQRAVS 108

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V + L     +  + T    +I ++      D           +I      ++   +  
Sbjct: 109 QVQATLPEGV-EPTVNTAGTDDIPVLALSVTSDADEDKLAANLEDIAE---PELKKVDGV 164

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q + +     Q+        L        +++                           
Sbjct: 165 SQVMIAGAKTKQVEVTIRRDDLEDEGANLDEIAGILQSNGIPTSAG-------------- 210

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  E+                    +                  ++      V   
Sbjct: 211 -------ELKSDEGTAPVEVGTRIRSVDAIKDLVISGKDDPIKLSDVADVKIENQPVESI 263

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          ++  +              L          +           S  
Sbjct: 264 SRTNGQPSLSVSIMKESDANTVDVSAAVSEKLPELEKSMGDNTEFVSAFDQAPFIEQSIH 323

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +     ++V+ + +L  +  ++   SI L++++ +  L + G TL + ++  +
Sbjct: 324 DLLVEGGLGLFFAVLVILVFLLSVRATIITAISIPLSLLIAMVGLWMGGETLNMLTLGAL 383

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            + +G  VD +I+V E IR  +      F ++    S     I  S +T +   + L F 
Sbjct: 384 TISVGRVVDDSIVVIEAIRRRHASGGEKFANILAAVSEVSGAITASTLTTVAVFLPLAFV 443

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R FA+T  +++L S+F A++IV  +  + +R ++ K        +       
Sbjct: 444 SGQTGEMFRPFALTATIALLSSLFVALTIVPVLAYWFLRQREAKVKLTRAEKKEIRRSRK 503

Query: 538 IAIQFMR 544
             +   R
Sbjct: 504 GMLSEWR 510



 Score = 91.7 bits (225), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 34/246 (13%), Positives = 87/246 (35%), Gaps = 6/246 (2%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
             V    +E+  +  IS  N     +  +  +           V E + +    +   + 
Sbjct: 248 SDVADVKIENQPVESISRTNGQPSLSVSIMKESDANTVDVSAAVSEKLPELEKSMGDNTE 307

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
             +     P I + +    + G +    A+L+ +         +    ++ L +   +  
Sbjct: 308 FVSAFDQAPFIEQSIHDLLVEGGLGLFFAVLVILVFLLSVRATIITAISIPLSLLIAMVG 367

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             + G   N+  + A+   +G  V+D +VV + +R   + + +       I  +++E  G
Sbjct: 368 LWMGGETLNMLTLGALTISVGRVVDDSIVVIEAIR---RRHASGGEKFANILAAVSEVSG 424

Query: 771 RSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               +++      LP+  V G  G +   FA+     ++ +   ++ I   +  +    R
Sbjct: 425 AITASTLTTVAVFLPLAFVSGQTGEMFRPFALTATIALLSSLFVALTIVPVLAYWFLRQR 484

Query: 828 AKNARI 833
               ++
Sbjct: 485 EAKVKL 490



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 31/223 (13%), Positives = 78/223 (34%), Gaps = 8/223 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              +                 V   V+  + ++    ++        +   E   +  + +
Sbjct: 926  TDSQRSTTVSVTPAGDDLGTVSADVQSALNDVDIPDSVSVDTGGATQEQNEAFSQLGLAM 985

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            + + + + + +   F      L  + ++    T ++    L      LT++  +L LIG 
Sbjct: 986  LAAILIVFVIMVATFKSLLQPLILLVSIPFAATGSIALSLLTDTPLGLTSMIGLLMLIGI 1045

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
             V + +V+ D +          +  R  I           + T+ A   +++PMA+    
Sbjct: 1046 VVTNAIVLIDLIN---HFRARGVDLRAAIVHGARLRYRPILMTAAATIFALVPMALGLTG 1102

Query: 790  GGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            GG  I    AI +  G++ +   ++ +   + L +   + + A
Sbjct: 1103 GGVFISKPLAIVVIGGLISSTLLTLILVPVLYLLLEGAKERRA 1145


>gi|15800288|ref|NP_286300.1| putative inner membrane component for iron transport [Escherichia
           coli O157:H7 EDL933]
 gi|15829867|ref|NP_308640.1| inner membrane component for iron transport [Escherichia coli
           O157:H7 str. Sakai]
 gi|168747762|ref|ZP_02772784.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4113]
 gi|168754667|ref|ZP_02779674.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4401]
 gi|168760284|ref|ZP_02785291.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4501]
 gi|168770170|ref|ZP_02795177.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774629|ref|ZP_02799636.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779057|ref|ZP_02804064.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4076]
 gi|168786414|ref|ZP_02811421.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC869]
 gi|168798127|ref|ZP_02823134.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC508]
 gi|195936120|ref|ZP_03081502.1| putative inner membrane component for iron transport [Escherichia
           coli O157:H7 str. EC4024]
 gi|208808694|ref|ZP_03251031.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815163|ref|ZP_03256342.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208823167|ref|ZP_03263485.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396317|ref|YP_002269206.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4115]
 gi|217324598|ref|ZP_03440682.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791740|ref|YP_003076577.1| copper/silver efflux system, membrane component [Escherichia coli
           O157:H7 str. TW14359]
 gi|261224040|ref|ZP_05938321.1| copper/silver efflux system, membrane component [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261257734|ref|ZP_05950267.1| copper/silver efflux system, membrane component [Escherichia coli
           O157:H7 str. FRIK966]
 gi|48474909|sp|Q8XBY1|CUSA_ECO57 RecName: Full=Cation efflux system protein CusA
 gi|12513460|gb|AAG54908.1|AE005237_4 putative inner membrane component for iron transport [Escherichia
           coli O157:H7 str. EDL933]
 gi|13360071|dbj|BAB34036.1| putative inner membrane component for iron transport [Escherichia
           coli O157:H7 str. Sakai]
 gi|187769702|gb|EDU33546.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017713|gb|EDU55835.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4113]
 gi|189002981|gb|EDU71967.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4076]
 gi|189358032|gb|EDU76451.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4401]
 gi|189360873|gb|EDU79292.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369194|gb|EDU87610.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4501]
 gi|189373578|gb|EDU91994.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC869]
 gi|189379292|gb|EDU97708.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC508]
 gi|208728495|gb|EDZ78096.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4206]
 gi|208731811|gb|EDZ80499.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737360|gb|EDZ85044.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157717|gb|ACI35150.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           EC4115]
 gi|209748662|gb|ACI72638.1| putative inner membrane component for iron transport [Escherichia
           coli]
 gi|209748664|gb|ACI72639.1| putative inner membrane component for iron transport [Escherichia
           coli]
 gi|209748666|gb|ACI72640.1| putative inner membrane component for iron transport [Escherichia
           coli]
 gi|217320819|gb|EEC29243.1| cation efflux system protein cusA [Escherichia coli O157:H7 str.
           TW14588]
 gi|254591140|gb|ACT70501.1| copper/silver efflux system, membrane component [Escherichia coli
           O157:H7 str. TW14359]
 gi|320192979|gb|EFW67619.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Escherichia coli O157:H7 str. EC1212]
 gi|320638022|gb|EFX07786.1| copper/silver efflux system, membrane component [Escherichia coli
           O157:H7 str. G5101]
 gi|326341326|gb|EGD65118.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Escherichia coli O157:H7 str. 1044]
 gi|326345897|gb|EGD69636.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [Escherichia coli O157:H7 str. 1125]
          Length = 1045

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 149/599 (24%), Gaps = 45/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +          +      I     +     
Sbjct: 236 YL-------------------QTLDDFNHIVLKASENGVPVYLRDVAKIQVGPEMRRGIA 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L   V+   +   ++  +    I         L++        +           +   
Sbjct: 277 ELNGEVVGGVVI-LRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 336 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 396 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITNASVEVGPALFISLLII 455

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 456 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 516 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 574



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 761  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 820

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 821  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 878

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 879  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 937

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 938  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALHHGAVLRVRPKAMTVAVIIAGLLPIL 997

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 998  WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1045


>gi|296133303|ref|YP_003640550.1| acriflavin resistance protein [Thermincola sp. JR]
 gi|296031881|gb|ADG82649.1| acriflavin resistance protein [Thermincola potens JR]
          Length = 1043

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 54/526 (10%), Positives = 158/526 (30%), Gaps = 47/526 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           + + +       +   G+  +         ++ FP   P              +++    
Sbjct: 11  KYSIFA--FIIAVLLFGIYAS-----KTLKMELFPDTSPPL-----------VNVITAYP 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +E  + ++       + +   + I + F   R  +  A  +   +
Sbjct: 53  GVSAKDVAKDVSKPMEEEFATVEGVKKIKSTSQDGLSIIKVEFHYGRDVDVAAVDIQNAI 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +  +L    ++  ++  +     ++       +V    +        +    +     
Sbjct: 113 NRIKRQLPEGIQEPQVMKFSSSSKPVITYAIQSQKVSLATV--RDLAENEIKTALQAVNG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       Q+    D  +L  L     +++      N S  G     +        
Sbjct: 171 VAAVDVFGGYKGQVNVLVDKRKLDALNIPLDRVTGAISGQNASAPGGRITGQDQEFLIRL 230

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                +  E+    +                    D       +     ++         
Sbjct: 231 VQEYANPEELLNTVI--------------------DNKNGNLIYLKDVASVDASGEERRS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                           +   +    I+        L      +++ + ++ +V      +
Sbjct: 271 EYRFNGKAAIALQVIKREDANTVEVIDLVKEKVRELEKSYPYLEIKVADDDSVFTKQVVE 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           ++  G+      L  +++ + ++     ++   S+ ++ + TLAL+ + G  L L +++G
Sbjct: 331 NMT-GSVRDAIILTTLIIMISIVSLSESVIVSLSMPISFLATLALMKISGMELNLITLSG 389

Query: 420 IVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+ VD +I+V E I   +    + +  +   G    +        T  I  V L 
Sbjct: 390 LILAVGIVVDDSIIVLENIMRHHHEFKKDLKTAAIEGTKEIFLADMAGTSTHAIVLVPLL 449

Query: 479 FFGGGAVRGFA---ITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           F  G   + F    +T+  ++ +S+  +++++    + I      +
Sbjct: 450 FIEGFVGKVFGPLSLTLIYALGVSLIVSLTVIPLFTVLIGGRSWPR 495



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/262 (10%), Positives = 81/262 (30%), Gaps = 8/262 (3%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                           V  + P+   V   ++  + I   +           + +      
Sbjct: 766  RYRPEDRTSLDNLTSVTLSTPIGARVPLRDVAEIGISRGANVVTRENLQPTIDILGYTYG 825

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                    ++  +     VP             +   + R  +  + ++ +A+ + +  +
Sbjct: 826  RTFSHVTDDISNELARIPVPDGYSITITGEQTDLQESM-RDLLYSLALAILAVYLLLVSQ 884

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            F+ +   +  +  + L I              +++ +  ++ L+G  VN+ +++ D +  
Sbjct: 885  FRSFIHPVTIMVAVPLVIIGVSLALLFTNKVVSMSVMLGLILLVGTVVNNSIMLIDFI-- 942

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAF 803
             ++         + I +S+       + T+   +A  + +      G       A  +  
Sbjct: 943  -IRARKDGKPRFEAIVESVRVRFRPIMMTAMSQLAGMLPLATGMALGSERFAPLATAVIG 1001

Query: 804  GIVVAASSSIFIAAPILLFIYD 825
            GI+ A   ++ I   +     D
Sbjct: 1002 GILTATLLTMVIVPVVYTIFDD 1023



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 52/141 (36%), Gaps = 5/141 (3%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           ++    ++ +    TL    + G+E NL  ++ ++  +G  V+D ++V + +      + 
Sbjct: 357 SVIVSLSMPISFLATLALMKISGMELNLITLSGLILAVGIVVDDSIIVLENI--MRHHHE 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGIVVAA 809
                +    +   E     +  +    I ++P+    G V   F    + + + + V+ 
Sbjct: 415 FKKDLKTAAIEGTKEIFLADMAGTSTHAIVLVPLLFIEGFVGKVFGPLSLTLIYALGVSL 474

Query: 810 SSSIFIAAPILLFIYDWRAKN 830
             S+ +     + I       
Sbjct: 475 IVSLTVIPLFTVLIGGRSWPR 495


>gi|170751483|ref|YP_001757743.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
 gi|170658005|gb|ACB27060.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 1044

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 77/586 (13%), Positives = 177/586 (30%), Gaps = 40/586 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L+ ++  +GL+           + RFP+                  +     
Sbjct: 11  RKPLPSVVLFLVLMILGLVS-----FRSLPITRFPNIDIPIV---------SVTITQSGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +  + ++  + +K     + ++ +  +  T+ F     ++   + V   +  
Sbjct: 57  APAELQTQVTKWVEDSVAGVKGVKHILSTITEGTSTTTIEFRLEVNQDRATNDVKDAIAK 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L     + ++       + I++   +   +     + S  +       +   +   
Sbjct: 117 IRQNLPRTIDEPIVSRVEIAGLPIMVYGASAPAMTPE--DLSWFVDDVVARGLQSVKGVG 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++     P RL  L  T A ++    L +    G                
Sbjct: 175 GVERLGGVAREIRVTLKPDRLLALGITAADVNRQLRLTSADMAG---------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
               + E+ G   +                        +   +                R
Sbjct: 219 ---GRAEVGGQEQSIRALAASASLETLAKTSIVVPGNRKVRLDELATLSDTAEEPRTFAR 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               PV+  AI         + ++  A  +AA+  A        I    +V   +G+   
Sbjct: 276 FNGEPVVAFAISRANGASDADVSVGVAKKIAALHAANPNVRFDLIDT--SVDNTIGNYHS 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A L ++V+ + +   +  L+A  ++ L+V+ T  ++S LG +L   S+  I 
Sbjct: 334 AMMGLIEGAILAVVVVLLFLRDWRATLIAAVALPLSVLPTFWVMSALGFSLNAVSLLAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  G+ VD  I+  E I    R  +S + +           +     T +     + F G
Sbjct: 394 LVTGILVDDAIVEIENIVRHMRMGKSPYRAALEAADEIGLAVIAITATIIAIFSPVSFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + F +T+  ++ +S+  A  I   +  + +R           + R +      
Sbjct: 454 GIAGQYFKQFGLTIAAAVFMSLLVARLITPLLAAYFLRDHGPDHERDGLVMRGYTRLVAW 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           +++               SI S  LL    L      +    + + 
Sbjct: 514 SVRHKFITLVLGIACFAASIASTGLLPAGFLPAEDQARTLFVVELP 559



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/224 (14%), Positives = 83/224 (37%), Gaps = 7/224 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++   V L+     S A   ++  V    T       +  ++    ++  E+     + +
Sbjct: 789  DRAVRVALEGDMQGSDALAELIGQVMNLPTAKNLPPGVTISQTGDAEVMGEVFEGFALAM 848

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
                + +   + + F  +   L  + +L L I   +    +  +  ++  V  +L L+G 
Sbjct: 849  GAGLMMVFGVLILLFGNFLQPLTILFSLPLSIGGAILALLICHMPISMPVVIGILMLMGV 908

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
               + +++ D   + ++     +     I  +  +     V T++A    ++P A+    
Sbjct: 909  VTKNAIMLVDFAVEQIRA---GVDRNVAIVDAGRKRARPIVMTTIAMAAGMVPSAMAYGI 965

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG      A+ +  G++V+   S+     I + + D      R+
Sbjct: 966  GGEFRAPMAVAVIGGLIVSTVLSLVFVPAIFVLMDDLSRLLTRL 1009



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/249 (11%), Positives = 75/249 (30%), Gaps = 6/249 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V  NR V L  + +  ++ +      +            +         +  +    
Sbjct: 246 SIVVPGNRKVRLDELATLSDTAEEPRTFARFNGEPVVAFAISRANGASDADVSVGVAKKI 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +    P       +              +  +  + +A+++ +     W   L A   
Sbjct: 306 AALHAANPNVRFDLIDTSVDNTIGNYHSAMMGLIEGAILAVVVVLLFLRDWRATLIAAVA 365

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L L +  T    +  G   N  ++ A+  + G  V+D +V  + +   ++      S   
Sbjct: 366 LPLSVLPTFWVMSALGFSLNAVSLLAITLVTGILVDDAIVEIENI---VRHMRMGKSPYR 422

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIA 816
              ++ +E     +  +        P++  G   G     F + +A  + ++   +  I 
Sbjct: 423 AALEAADEIGLAVIAITATIIAIFSPVSFMGGIAGQYFKQFGLTIAAAVFMSLLVARLIT 482

Query: 817 APILLFIYD 825
             +  +   
Sbjct: 483 PLLAAYFLR 491


>gi|148360331|ref|YP_001251538.1| hypothetical protein LPC_2269 [Legionella pneumophila str. Corby]
 gi|296106608|ref|YP_003618308.1| heavy-metal exporter, HME family [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282104|gb|ABQ56192.1| hypothetical protein LPC_2269 [Legionella pneumophila str. Corby]
 gi|295648509|gb|ADG24356.1| heavy-metal exporter, HME family [Legionella pneumophila 2300/99
           Alcoy]
          Length = 1049

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 74/600 (12%), Positives = 161/600 (26%), Gaps = 57/600 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +++  ++++   +I  +G+         +  +D  P                   +  + 
Sbjct: 10  LKHRWFVLLFTFIIAVLGVY-----NFQRLPIDAVPDITNVQ-----------VQINTQA 53

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  V   +    +   S L          R   +++T+ F D          +   
Sbjct: 54  SGYSPFEVEQRITFPIELAMSGLPNLDYTRSLSRYGLSQVTVVFKDGTNIYFARQLINER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLS----QNNIDQVISHAIEQSMEIIRQRIDQI 174
           LQ V  KL  + +  L   +T      + +     N       +  E           Q+
Sbjct: 114 LQEVKDKLPPEAETTLGPISTGLGEIFMYTVTNKANTPKNQRYNPTELRTIQDWIIKPQL 173

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
              E   +         Q     DP++L +   +   +       N +           +
Sbjct: 174 RNVEGVAEVNTIGGYEKQFHITPDPTKLVRYGLSLNNVVEALERNNANVGAGYIERNGEQ 233

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           +       V++  +I  I +                                   +    
Sbjct: 234 NLIRVPGQVKNIADIENIVVANFE--------------------GTPVRIRDVAEVALGK 273

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          +        
Sbjct: 274 ELRTGAATENGDEVVLGTVFMLMGENSRTVSQRVAAKMKEINKSLPEGVEAVTVYNRTLL 333

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV ++LF+ +   +  L+    I L+++LT+  +     +  L
Sbjct: 334 VNATINTVKKNLLEGALLVCVILFLFLGNVRAALITAMVIPLSMLLTITGMVTNQISANL 393

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYSTI 463
            S+    L  GL VD  +++ E   +   + Q     +     R              +I
Sbjct: 394 MSLGA--LDFGLIVDGAVIIVENCIKHLGEQQHALQRILNLEERLKTIAYATTEVIRPSI 451

Query: 464 FDSNITALIATVVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           F   I  ++   +L   G         A T+ +++L SM  A++ V A +   +R +  +
Sbjct: 452 FGVFIITVVYLPILTLTGVEGKMFLPMAETVIIALLASMLFALTFVPAAVAIFLRGRIQE 511

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             I   F   R       +L  I  I      G       +G I +
Sbjct: 512 KENRLVHFLSIGYAKVIRRCFHARRKVIGAAVVLVIISLILSFRLGGEFIPSLDEGDIAM 571



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 90/249 (36%), Gaps = 12/249 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             + LS V   + S     IS +           ++ +   S        + +K       
Sbjct: 801  FIPLSEVAKMVRSESPNQISREVGKRRVVVTANVRNRDLSSFVNEAKQRIEQKVKIPSGY 860

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              T           S+ L     + V I+ + + + +++ F        + + I  +  T
Sbjct: 861  WITWGGQFEQLQSASQRLQ----IVVPITLLGIFLLLFMSFGNARNALLVFSGI-PLALT 915

Query: 708  LGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             G FAL+  GI  +++A    + L G +V + +V+   +  N          +D + +  
Sbjct: 916  GGVFALWLRGIPLSISAGVGFIALSGVAVLNGLVMITFI--NKLREQKKYYLKDAVLQGS 973

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   +   
Sbjct: 974  LARLRPVLMTALVASLGFVPMALATGTGSEVQRPLATVVIGGIISSTFLTLLVLPGLYYI 1033

Query: 823  IYDWRAKNA 831
             ++ R K  
Sbjct: 1034 FHERRKKQG 1042


>gi|321314400|ref|YP_004206687.1| transporter involved in surfactin self-resistance [Bacillus
           subtilis BSn5]
 gi|320020674|gb|ADV95660.1| transporter involved in surfactin self-resistance [Bacillus
           subtilis BSn5]
          Length = 1052

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/567 (11%), Positives = 159/567 (28%), Gaps = 37/567 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + V L ++I     L A  N   +S+ D     +                       
Sbjct: 10  KNKFAVWLMTIIVTAAGLYAGVNMKQESIPDVNMPYLT-------------ISTTYPGAT 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    L    +   +  +  + + + +   +  +    +    L+ V
Sbjct: 57  PSQVADEVTKPVEQAVQNLDGVSVVTSTSYENASSVMIEYDYEKDMDKAKTEAAEALENV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D K   +   +     I+    + D    +  E + ++    + ++   E    
Sbjct: 117 --SLPDDAKDPEISRYSLNSFPILTLSVSSD--KDNLQELTKQVEDSLVSKLEGIEGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S + + ++       +L++       +       + +    ++       S      
Sbjct: 173 VQVSGQQVEEVEFSFKEDKLKEYGLDEDTVKKVIQGSDVTTPLGLYTFGNEEKSVVVSGD 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD-------------- 288
           +E   ++  + +  A+A+    +          +                          
Sbjct: 233 IETIKDLKNMRIPTASASSAGSSAASQAAAQSAQAAQSAQAAAQAQQSASTAVPTVKLSD 292

Query: 289 -NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
               K +                         +     +                     
Sbjct: 293 IATIKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADNVKAE-LKKFKEDHKGFNYSA 351

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                     S           A   ++++ + +   K  L++  SI L++++ L +L  
Sbjct: 352 TLDMAEPITQSVDTMLSKAIFGAIFAIVIILLFLRDIKSTLISVVSIPLSLLIALLVLQQ 411

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTIF 464
           L  TL + ++  + + IG  VD +I+V E I    R           +       +  I 
Sbjct: 412 LDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKALVREATKEMFKPIM 471

Query: 465 DSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            S I  +   + L   GG     F I   L+I+ ++  ++ I   ++  +      KS+ 
Sbjct: 472 SSTIVTIAVFLPLALVGGQIGELF-IPFALTIVFALAASLVISITLVPMLAHSLFKKSLT 530

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVG 551
             P+      P  +A  + +   W + 
Sbjct: 531 GAPIKAKEHKPGRLANIYKKVLNWALS 557



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 92/236 (38%), Gaps = 3/236 (1%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + ++ ++  +   +    +   +  ++    ++V     ++   KK  E         T
Sbjct: 293 IATIKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADNVKAELKKFKEDHKGFNYSAT 352

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +   I++ +       +  +  A++I +         L ++ ++ L +   L      
Sbjct: 353 LDMAEPITQSVDTMLSKAIFGAIFAIVIILLFLRDIKSTLISVVSIPLSLLIALLVLQQL 412

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  V+D +VV + + + M+L    +  + L+ ++  E     + 
Sbjct: 413 DITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKALVREATKEMFKPIMS 472

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +++      LP+A+ GG +      FA+ + F +  +   SI +   +   ++   
Sbjct: 473 STIVTIAVFLPLALVGGQIGELFIPFALTIVFALAASLVISITLVPMLAHSLFKKS 528



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 95/261 (36%), Gaps = 8/261 (3%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +K    L            V+    +      +          +         S   T V
Sbjct: 789  YKSVKDLENKKITSATGQEVKIGDVAKVKEGSTSDTVSKRDGKVYADVTGEVTSDNVTAV 848

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
               ++KKI ++     +            +   K  + ++ +   + + + I F    A 
Sbjct: 849  SAAIQKKIDKLDHPDNVSIDTGGVSADIADSFTKLGLAMLAAIAIVYLVLVITFGGALAP 908

Query: 695  GAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             AI  +L   +   L    + G   +L A+  +L LIG  V + +V+ DR+   +     
Sbjct: 909  FAILFSLPFTVIGALVGLYVSGETISLNAMIGMLMLIGIVVTNAIVLIDRV---IHKEAE 965

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAA 809
             +S R+ + ++ +  L   + T++A   +++P+A+    G  VI     + +  G++ + 
Sbjct: 966  GLSTREALLEAGSTRLRPILMTAIATIGALIPLALGFEGGSQVISKGLGVTVIGGLISST 1025

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
              ++ I   +   +  +R K 
Sbjct: 1026 LLTLLIVPIVYEVLAKFRKKK 1046


>gi|299136243|ref|ZP_07029427.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
 gi|298602367|gb|EFI58521.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
          Length = 1063

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/579 (12%), Positives = 168/579 (29%), Gaps = 46/579 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL-- 58
           ++     V+L  ++  IG     P  + ++ +D FP+                  +V   
Sbjct: 8   LKRPYTFVVLSLLLFIIG-----PVVMLRTPVDIFPNIDIPV-----------VSVVWNY 51

Query: 59  -EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             +   +  +  +  +   L + +              + + + F           +VT 
Sbjct: 52  AGMSPQELSDRIVLPFERSLTTTVNDIEHSESQTLNGVSVVKIFFRPQVNISQAVAQVTA 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q    +        L++  +   + ++    + + +     + +         Q+   
Sbjct: 112 ISQTALRQYPQGTTPPLVIQYSASSVPVLQLGLSGNGLTEQ--QLNDFGQNFVRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +             Q+  + +  +L+    + + +       N    G    +  +    
Sbjct: 170 QGAALAFPYGGKQRQVQVDINTQKLQAYGLSASDVVNSFNAQNIILPGGDVKMGHIDYPV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                     ++                     D+    +     +     N+       
Sbjct: 230 ETNSAPTSIKDL--------------------NDLPIKTVNGATVYIRDIGNVRDGFPPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +     +          S    I         + A   P                
Sbjct: 270 TNIVRVDGQRSSLLSIQKTGNSSTLDIIANVRAQLPSILAQLPPQLRLTPIADQSIFVRA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S       I A L   ++ + +   +  ++   SI L+VI +L +L+ LG T+ + ++
Sbjct: 330 AISGVVREALIAACLTAAMILIFLGSWRSTVIIAVSIPLSVICSLLMLAALGETINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     + + V  ++  G ++     F S I+  I  V +
Sbjct: 390 GGLALAVGILVDDATVEIENINRNLEEGKEVEDAILTGAAQIAVPAFVSTISICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINPLSRFF 532
           FF  G         A  +  ++L S F + +IV  M  ++++  +           + F 
Sbjct: 450 FFLTGVAKYLFVPLAEAVVFAMLASYFLSRTIVPTMAKYLLKGHEHDREEQAKKSKNPFV 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
                    F + R W  G+           L      +
Sbjct: 510 RFQITFEHYFEKLRQWYYGVLGFCMEYRAVFLIAIVAFW 548



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/197 (17%), Positives = 81/197 (41%), Gaps = 7/197 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             L  +  ++   + L+ I +  I        ++R+ ++   ++A  +LI++     W  
Sbjct: 302 AQLPSILAQLPPQLRLTPIADQSIFVRAAISGVVREALIAACLTAAMILIFLG---SWRS 358

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +    ++ L +  +L   A  G   N+  +  +   +G  V+D  V  + + +N++   
Sbjct: 359 TVIIAVSIPLSVICSLLMLAALGETINIMTLGGLALAVGILVDDATVEIENINRNLEE-- 416

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                 D I     +    +  ++++  I  +PM    G     F +P+A  +V A  +S
Sbjct: 417 -GKEVEDAILTGAAQIAVPAFVSTISICIVFVPMFFLTGVAKYLF-VPLAEAVVFAMLAS 474

Query: 813 IFIAAPILLFIYDWRAK 829
            F++  I+  +  +  K
Sbjct: 475 YFLSRTIVPTMAKYLLK 491



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ S I +   I + F  W      I  L   +   +    L G   ++ A+   +  +G
Sbjct: 892  LLFSIILVYALIVVNFQSWLDPFIIIAALPGALAGIVWLLFLTGTHISVPALTGAIMCVG 951

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    ++ M+     ++  +    +        + T++A  I ++PMA+   
Sbjct: 952  VATANSILVVSFAKEQMEA---GLNAAEAALSAGFTRFRPVIMTALAMMIGMVPMALGLG 1008

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             GG         +  G+++A   ++        F++     +A
Sbjct: 1009 DGGEQNAPLGRAVIGGLLLATFGTLTFVPVFFSFMHRKDKPHA 1051


>gi|307610899|emb|CBX00516.1| HelA protein [Legionella pneumophila 130b]
          Length = 1052

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/600 (12%), Positives = 157/600 (26%), Gaps = 57/600 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +++  ++++   +I  +G+         +  +D  P                   +  + 
Sbjct: 10  LKHRWFVLLFTLVIAILGVY-----NFQRLPIDAVPDITNVQ-----------VQINTQA 53

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  V   +    +   S L          R   +++T+ F D          +   
Sbjct: 54  SGYSPFEVEQRITFPIELAMSGLPSLDYTRSLSRYGLSQVTVVFKDGTNIYFARQLINER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI----SHAIEQSMEIIRQRIDQI 174
           LQ V  KL    +  L   +T      + +  N   V      +  E           Q+
Sbjct: 114 LQEVKDKLPPGVETTLGPISTGLGEIFMYTVTNKPNVPISQHYNPTELRTIQDWIIKPQL 173

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
              E   +         Q     DPS+L +   +   +                      
Sbjct: 174 RNVEGVAEVNTIGGYEKQFHITPDPSKLVRYRLSLNDVVEAL------------------ 215

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             + N   V      +    N        +    + +I                 +    
Sbjct: 216 --ERNNANVGAGYIETNGEQNLIRVPGQVQNMADIENIVIASFEGTPVRIRDVAEVALGK 273

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +        +  +           +     E        +          I        
Sbjct: 274 ELRTGAATENSKEVVLGTVFMLMGENSRTVSERVAAKMKDINKTLPEGVEAITVYNRTTL 333

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV ++LF+ +   +  L+    I L+++LT+  +     +  L
Sbjct: 334 VNATINTVKNNLLEGALLVCVILFLFLGNIRAALITAMVIPLSMLLTITGMVENQISANL 393

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYSTI 463
            S+    L  GL VD  +++ E   +   + Q     +     R              +I
Sbjct: 394 MSLGA--LDFGLIVDGAVIIVENCIKHLAEQQHALHRVLNLEERLKVISYATTEVIRPSI 451

Query: 464 FDSNITALIATVVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           F   I  ++   +L   G         A T+ +++L SM  A++ V A +   +R    +
Sbjct: 452 FGVFIITVVYLPILTLTGVEGKMFLPMAQTVIIALLASMLFALTFVPAAVAIFLRGHLQE 511

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +   F   R        L  +         G       +G I +
Sbjct: 512 KENWLVHYLSLGYAKVLRRCFHARRVVISAAVALVVVSLGIAFHLGGEFIPSLDEGDIAM 571



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 7/131 (5%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            +  T G FAL+  GI  +++A    + L G +V + +V+   +  N       +  +D +
Sbjct: 912  LALTGGVFALWLRGIPLSISAGVGFIALSGVAVLNGLVMITFI--NKLREQKKVYLKDAV 969

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 970  LQGSLARLRPVLMTALVASLGFVPMALATGTGSEVQRPLATVVIGGIISSTFLTLLVLPG 1029

Query: 819  ILLFIYDWRAK 829
            +    +  R K
Sbjct: 1030 LYYVFHGRRKK 1040


>gi|256020526|ref|ZP_05434391.1| copper/silver efflux system, membrane component [Shigella sp. D9]
 gi|300817917|ref|ZP_07098131.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 107-1]
 gi|332281707|ref|ZP_08394120.1| copper/silver efflux system [Shigella sp. D9]
 gi|300529614|gb|EFK50676.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 107-1]
 gi|332104059|gb|EGJ07405.1| copper/silver efflux system [Shigella sp. D9]
          Length = 1047

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|218694015|ref|YP_002401682.1| copper/silver efflux system, membrane component [Escherichia coli
           55989]
 gi|218350747|emb|CAU96439.1| copper/silver efflux system, membrane component [Escherichia coli
           55989]
          Length = 1047

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|218698947|ref|YP_002406576.1| copper/silver efflux system, membrane component [Escherichia coli
           IAI39]
 gi|218368933|emb|CAR16687.1| copper/silver efflux system, membrane component [Escherichia coli
           IAI39]
          Length = 1047

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/683 (10%), Positives = 173/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL V     L    T                     +           ++       
Sbjct: 117 VQGKLPVGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|46202552|ref|ZP_00053014.2| COG3696: Putative silver efflux pump [Magnetospirillum
           magnetotacticum MS-1]
          Length = 696

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 81/638 (12%), Positives = 184/638 (28%), Gaps = 50/638 (7%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----- 65
              +   G+         +  LD FP                 +++ ++++ +       
Sbjct: 3   ALAVFAFGIWTTF-----RLNLDAFPDV---------------TNIQVQINTESPGLAAA 42

Query: 66  -VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V   +    + + + +          +   + +T+ F D+         V   LQ    
Sbjct: 43  EVERLVTFPVESVMNGIPGVTQVRSISKTGLSVVTVVFEDNVDTYFARQLVLEKLQTAKE 102

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           ++        L   T     +             A+E       Q   Q+         L
Sbjct: 103 RIPNKLGSPELGPITTGLGQVYKYLLTSP--THSAMELREINDWQVKFQLRTVPGVTDVL 160

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                + Q   + DP+RL     T   +       N +  G+       + S   + LV 
Sbjct: 161 SFGGSVRQYQVQVDPNRLVSYDLTLDDLKKALQSNNANAGGWYIEGAQEQLSVRGEGLVS 220

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
              E                       +     G   F                   +  
Sbjct: 221 GGPE---------------GLADIESVVLKSVDGTPVFVRDVAKVEYGSEIRQGAVSMNG 265

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                  +       + N  I+      + ++A   P              L +    + 
Sbjct: 266 NGEAVMGVVLQLKGANTNTVIQGIRAKLSSVQASLPPDVKIEPVYDQSALILKAVGTVQK 325

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
             A  A L++IVLF+ +   +  LV   SI L++++ + ++   G +  L S+ G+ + I
Sbjct: 326 ALAEAAILIVIVLFLFLWNIRSALVVLVSIPLSMLVAVIMMRWAGLSANLQSLGGLAIAI 385

Query: 425 GLAVDSNILVNERIREE----NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
           G+ VD ++++ E I       + +++S+   +        + +F + +  ++  + LF  
Sbjct: 386 GMMVDGSLVMVENIVRHLAEPHYRDRSLPWRVAQAAREVGNPVFFAVLIIIVVFLPLFTL 445

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G      A  +  ++L S+  A++IV  +    +   +         +        
Sbjct: 446 QGVEGKLFSPMAFVIAFAMLGSLVVALTIVPVLASLALSPNQSDEDSFLMRAVRRAYTPA 505

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +A    R        +    I    L            +G + + +  N  + L+     
Sbjct: 506 LAFALRRRVLVVGYAAGALVISGFLLTRLGTEFVPELDEGTLSVRITMNPSISLAESLKI 565

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
              L+   +S  +     + + R +            +
Sbjct: 566 AHRLERRLLSNPDVTSAISQIGRPELGGDPEAVNNNEI 603


>gi|296330130|ref|ZP_06872612.1| transporter involved in surfactin self-resistance [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305673374|ref|YP_003865046.1| transporter involved in surfactin self-resistance [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296152719|gb|EFG93586.1| transporter involved in surfactin self-resistance [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305411618|gb|ADM36737.1| transporter involved in surfactin self-resistance [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 1052

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 62/578 (10%), Positives = 155/578 (26%), Gaps = 40/578 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + V L ++I     L A  N   +S+ D     +                       
Sbjct: 10  KNKFAVWLMTIIVTAAGLYAGMNMKQESIPDVNMPYLT-------------ISTTYPGAT 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    L    +   +  +  + + + +   +  +    +    L+ V
Sbjct: 57  PSQVADEVTKPVEQAVQNLDGVSVVTSTSYENASSVMIEYDYEKDMDKAKTEAAEALENV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D K   +   +     I+    + D    +  E + ++    + ++   E    
Sbjct: 117 --SLPDDAKDPEISRYSLNSFPILTLSVSSD--KDNLQELTKKVEDSLVPKLEGIEGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S + + ++       +L++       +       + +    ++       S      
Sbjct: 173 VQVSGQQVEEVEFSFKEDKLKEYGLDEDTVKQVIQGSDVTTPLGLYTFGNKEKSVVVSGD 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD-------------- 288
           +E   ++  + +  A+A+    +          +                          
Sbjct: 233 IETIKDLKNMRIPTASASSAGSSAASQAAAQSAQAAQSAQAAAQAQQSASTDVPTVKLSD 292

Query: 289 -NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
               K +                         +     +                     
Sbjct: 293 IATMKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADDVKAE-LKKFKEDHKGFDYSA 351

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                     S           A   ++++ + +   K  L++  SI L++++ L +L  
Sbjct: 352 TLDMAEPITQSVETMLSKAIFGAIFAIVIILLFLRDIKSTLISIISIPLSLLIALLVLQQ 411

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIF 464
           L  TL + ++  + + IG  VD +I+V E I    R           +       +  I 
Sbjct: 412 LDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKILVREATKEMFKPIM 471

Query: 465 DSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMM-IFIIRYKKM 520
            S I  +   + L   GG        FA+T+  ++  S+  +I++V  +      +    
Sbjct: 472 SSTIVTIAVFLPLALVGGQIGELFIPFALTIVFALAASLLISITLVPMLAHSLFKKSLTG 531

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSI 558
             +         L      +         +   I   +
Sbjct: 532 GQVKAKEHKPGRLANIYKNVLNWALSHKWITSIIAVLM 569



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 92/236 (38%), Gaps = 3/236 (1%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + ++ ++  +   +    +   +  ++    ++V     ++   KK  E         T
Sbjct: 293 IATMKDVKKAESVSRTNGKDSIGINIVKANDANTVEVADDVKAELKKFKEDHKGFDYSAT 352

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +   I++ +       +  +  A++I +         L +I ++ L +   L      
Sbjct: 353 LDMAEPITQSVETMLSKAIFGAIFAIVIILLFLRDIKSTLISIISIPLSLLIALLVLQQL 412

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  V+D +VV + + + M+L    +  + L+ ++  E     + 
Sbjct: 413 DITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKILVREATKEMFKPIMS 472

Query: 775 TSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +++      LP+A+ GG +      FA+ + F +  +   SI +   +   ++   
Sbjct: 473 STIVTIAVFLPLALVGGQIGELFIPFALTIVFALAASLLISITLVPMLAHSLFKKS 528



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 95/261 (36%), Gaps = 8/261 (3%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +K    L            V+    +      +          +         +   T V
Sbjct: 789  YKSVKDLENKKITSATGQEVKIGDVAKVKEGSTSDTVSKRDGKVYADVTGEVTTDNVTAV 848

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
               V+KKI ++     +            +   K  + ++ +   + + + I F    A 
Sbjct: 849  SADVQKKIDKLDLPDNVSIDTGGVSADIADSFTKLGLAMLAAIAIVYLVLVITFGGALAP 908

Query: 695  GAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             AI  +L   +   L    + G   +L A+  +L LIG  V + +V+ DR+   +     
Sbjct: 909  FAILFSLPFTVIGALVGLYVSGETISLNAMIGMLMLIGIVVTNAIVLIDRV---IHKEAE 965

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAA 809
             +S R+ + ++ +  L   + T++A   +++P+A+    G  VI     + +  G++ + 
Sbjct: 966  GLSTREALLEAGSTRLRPILMTAIATIGALIPLALGFEGGSQVISKGLGVTVIGGLISST 1025

Query: 810  SSSIFIAAPILLFIYDWRAKN 830
              ++ I   +   +  +R K 
Sbjct: 1026 LLTLLIVPIVYEVLAKFRKKK 1046


>gi|223940238|ref|ZP_03632097.1| cation/multidrug efflux pump [bacterium Ellin514]
 gi|223891065|gb|EEF57567.1| cation/multidrug efflux pump [bacterium Ellin514]
          Length = 463

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/485 (10%), Positives = 122/485 (25%), Gaps = 35/485 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   +  +G++           +   P                     L   
Sbjct: 9   RRPVGTSLLAIGLFLLGIVA-----YKLLPVAPIPRVDFPMIQ---------VSASLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   V   L    ++    +                +T+ F   R  +  A  V   +  
Sbjct: 55  DPATVASSLAAPLEKRLGQIAGVSEMTSISTLGGASVTIQFNLDRKVDGAARDVAAAISA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L ++              + ++    +        +           ++   E   
Sbjct: 115 AASDLPINLPSPPTYRKVNPADAPIMI-LAMTSDTLKPTDVYEAADTIIAQRLSQVEGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q + S      +  + +P+ L         +  +                          
Sbjct: 174 QAVISGADKSAVRVQVNPAALASTGMGLEDVRTYL--------------------SQVNV 213

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +               +N           +             +   + + +     G 
Sbjct: 214 DLPKGSIDGERDSYTLESNDQLLDAGDYQSLILTTKSNVPIKLSSLGKVFEGVENERVGG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I   +   +   T++    +   L     P     +          S   
Sbjct: 274 WAGTNRAVLVIVFKQPDANVIETVDRIKAVLPELERWIPPSVKIRLISDRTTTIRASVEE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + +  +   LV++V+F+ +       +A  ++ L +  T   + L G +L   S+  I 
Sbjct: 334 VQFSLLLSIALVVMVIFLFLRRFWPTFIASITVPLALAGTFGFMYLFGYSLDNLSLMAIT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G  VD  I+V E +     +      +   G  +   T+   +++ +   + L F G
Sbjct: 394 ISVGFVVDDAIVVIENVFRFIEQGDRTMVAALKGARQIGFTVVSMSLSLVAVFIPLLFMG 453

Query: 482 GGAVR 486
           G   R
Sbjct: 454 GLIGR 458



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + M+I++++R  W     A  T+ L +  T GF  LFG   +  ++ A+   +G+
Sbjct: 340 LSIALVVMVIFLFLRRFWP-TFIASITVPLALAGTFGFMYLFGYSLDNLSLMAITISVGF 398

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + +    +             K   +     V  S++     +P+   GG 
Sbjct: 399 VVDDAIVVIENV---FRFIEQGDRTMVAALKGARQIGFTVVSMSLSLVAVFIPLLFMGGL 455

Query: 793 VIGSF 797
           +   F
Sbjct: 456 IGRLF 460


>gi|134291785|ref|YP_001115554.1| acriflavin resistance protein [Burkholderia vietnamiensis G4]
 gi|134134974|gb|ABO59299.1| acriflavin resistance protein [Burkholderia vietnamiensis G4]
          Length = 1088

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/552 (12%), Positives = 150/552 (27%), Gaps = 44/552 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G     P  L +   D FP+                  +V   
Sbjct: 8   LRRPYTFVVLALLIFIAG-----PLALLRMPTDIFPNIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMAKRITSNYERALTSDVDDIEHIESQSLNGVSVVKVFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + D +     +           Q+   
Sbjct: 112 NAASILRILPPGTLPPNIITYNASTVPILQLGLSSDTLAEQ--QLYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + D   L+        +       N    G    +       
Sbjct: 170 QGAAVPLPYGGKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGTAKIGTHEYDV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     D+    +G    +     ++    A  
Sbjct: 230 QLNGSTQTVAAL--------------------NDLPVKTIGGSVVYVRDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    I+    +   + AG          +        
Sbjct: 270 TNIVRADGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGLPKALHIAALDDQSVFVKS 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   SI L V+ +L  L  LG T+ + ++
Sbjct: 330 AIQGVVREALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSLLALGALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     + + +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLERGEPLEDAILTGAGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G         A  +  +++ S F + ++V  + + ++R K          +R   +
Sbjct: 450 FLLTGVARYLFVPMAEAVIFAMVASYFFSRTLVPTLAMVLMRAKGQGRPPRGVFARIAGL 509

Query: 535 PDCIAIQFMRAR 546
                 +F   R
Sbjct: 510 QAAFERRFDAIR 521



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 10/235 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR                  +      L  +   S +   +++ VK  + +I        
Sbjct: 256 VRDVAHVRDGYAPQTNIVRADGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGLPKAL 315

Query: 654 TEIVGPKISRELIRKGIV-----GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                       ++  I       +I + +  L+ +     W   L    ++ L +  +L
Sbjct: 316 HIAALDD-QSVFVKSAIQGVVREALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSL 374

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                 G   N+  +  +   +G  V+D  V  + +              D I     E 
Sbjct: 375 LALGALGQTINIMTLGGLALAVGILVDDATVAIENI---THHLERGEPLEDAILTGAGEI 431

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +  ++++  I  +PM +  G     F +PMA  ++ A  +S F +  ++  +
Sbjct: 432 AVPTFVSTLSICIVFVPMFLLTGVARYLF-VPMAEAVIFAMVASYFFSRTLVPTL 485



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 55/156 (35%), Gaps = 7/156 (4%)

Query: 680  MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + + + F  W   L  +  L   +        +     ++ A+   +  IG +  + +
Sbjct: 909  VYLLMVVNFQSWLDPLVIVGGLPASLAGIAWMLFVTRTTLSVPALTGTILCIGIATANSI 968

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            +V +  R+ +       S       +        V T++A  I +LPMA+    GG    
Sbjct: 969  LVVNAARELLAG---GASPWQAALDAGFSRFRPVVMTALAMLIGMLPMALGLGDGGEQNA 1025

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 +  G+     S++     +  F++ W  +  
Sbjct: 1026 PLGRAVIGGLAFGTLSTLLFVPVVFGFVHAWLERRR 1061


>gi|149186547|ref|ZP_01864859.1| heavy metal RND efflux transporter, CzcA family protein
           [Erythrobacter sp. SD-21]
 gi|148829774|gb|EDL48213.1| heavy metal RND efflux transporter, CzcA family protein
           [Erythrobacter sp. SD-21]
          Length = 1055

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 65/570 (11%), Positives = 145/570 (25%), Gaps = 44/570 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L+ ++  IGL +A    +  + +D  P            D++              V   
Sbjct: 14  LFVVLAAIGLALAGFWAVRTTPVDALPDLS---------DVQVVIRSNYAGQAPRIVEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  V ++L   
Sbjct: 65  VTYPLATTMLSVPGAKTVRGYSFFGDSYVYVIFEDGTDLYWARSRVLEYLNQVQNRLPEG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            +  L    T                                 ++       +      +
Sbjct: 125 VESTLGPDATGVGWIYEY-ALVDRSGGHDLAGLRSLQDWFLRYELKTIPGIAEVASVGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     DP R+     T  ++       N    G +  +        +   +      
Sbjct: 184 VKQYQIVLDPYRMASFGVTHGQIVSAIQAGNQEAGGSIVEMGEAEFMVRSSGYLGS---- 239

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV-I 308
                                     E G          N+     +      L     +
Sbjct: 240 ---------------LDDFRSIPLRAEAGGVPVTLGDVANVQIGPELRRGIAELNGQGEV 284

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +        IE        L+A        +           S          
Sbjct: 285 AGGIVILRQGADARGAIEAVEAKLDQLQASLPEGVEIVTTYDRSQLIDASVDNLTTKLIE 344

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              +V +V  + + + +  LVA  ++ L V+    ++   G    + S+ GI + IG  V
Sbjct: 345 EFVVVALVCLLFLGHARSALVAVVTLPLGVLAAFLVMRFQGVNANIMSLGGIAIAIGAMV 404

Query: 429 DSNILVNERIREEN-----------RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           D+ +++ E   +                +  +  +          +F S +   ++ + +
Sbjct: 405 DAAVVMIENAHKHIERWTEENPDTVMSGEERWRIVADASKEVGPALFFSLLIITLSFLPV 464

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G      A T   ++  +   ++++V  +M ++IR K  +             
Sbjct: 465 FTLQAQEGRLFAPLAFTKTYAMAAAAILSVTLVPVLMGWLIRGKIPREDSNPINKTLTRA 524

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLL 564
                   MR     + I+ L    ++   
Sbjct: 525 YRPGLDWVMRRPKATLVIAGLIFATTLVPF 554



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 84/255 (32%), Gaps = 9/255 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A + + L  V     +     +  +         V ++ +   SV       +  +   
Sbjct: 791  PAGQQITLGTVADVRVTSGPPMLKSEQGRPTSYVYVDVRGRDLTSVVGDLQEAIDAEVDL 850

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                  +         +    L  + +V   ++ I +L+Y+  R ++  AL  + TL   
Sbjct: 851  PAGVSLSYAGQFEYLTRAYERL--QIVVPATLAIIFLLLYLIFR-RFDEALLIMGTLPFA 907

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD---L 760
            +T       L G   ++      + L G S    VV+   ++  ++     +   +    
Sbjct: 908  LTGGFWLLYLMGYNQSVATAVGFIALAGVSAEFGVVMLIYLKAALERREGELDADEVSAA 967

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I +     +     T       + P+ +    G  V+   A PM  G++ A   S+F+  
Sbjct: 968  IREGALLRVRPKAMTVAVILAGLFPILIGTGAGSEVMSRIAAPMIGGMITAPLLSMFVLP 1027

Query: 818  PILLFIYDWRAKNAR 832
               L +   R   ++
Sbjct: 1028 AAYLMMRRPRTNRSK 1042



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/214 (14%), Positives = 73/214 (34%), Gaps = 16/214 (7%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIR 687
            A    L+ ++  + E V + T  +   +       L  K I   V+++ +     +   
Sbjct: 302 EAVEAKLDQLQASLPEGVEIVTTYDRSQLIDASVDNLTTKLIEEFVVVALVC----LLFL 357

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR-- 745
                AL A+ TL L +          G+  N+ ++  +   IG  V+  VV+ +     
Sbjct: 358 GHARSALVAVVTLPLGVLAAFLVMRFQGVNANIMSLGGIAIAIGAMVDAAVVMIENAHKH 417

Query: 746 ------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF-- 797
                 +N     +      ++  +  E      ++ +   +S LP+          F  
Sbjct: 418 IERWTEENPDTVMSGEERWRIVADASKEVGPALFFSLLIITLSFLPVFTLQAQEGRLFAP 477

Query: 798 -AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            A    + +  AA  S+ +   ++ ++   +   
Sbjct: 478 LAFTKTYAMAAAAILSVTLVPVLMGWLIRGKIPR 511


>gi|226329111|ref|ZP_03804629.1| hypothetical protein PROPEN_03014 [Proteus penneri ATCC 35198]
 gi|225202297|gb|EEG84651.1| hypothetical protein PROPEN_03014 [Proteus penneri ATCC 35198]
          Length = 263

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 95/248 (38%), Gaps = 5/248 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                D      N  ++ +      N    ++ L       G S A       +  +   
Sbjct: 17  FVEYKDSGKRDENDRAVLVKSEEVINVANIQSRLGNSFRITGISNANEARQLSLLLRAGA 76

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           ++    I     +GP +  + I +G+   +   IA + ++ I ++  F + A T L+ ++
Sbjct: 77  LIAPIQIVEERTIGPTLGLQNITQGLEACLWGLIASVAFMIIYYR-KFGVIASTALMANL 135

Query: 705 TKTLGFFALF-GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
              +G  +L  G    +  +A ++  +  +V+  V++ +R+++ ++      S +  I +
Sbjct: 136 VLIVGVMSLLPGATLTMPGIAGIVLTLAVAVDANVLINERIKEELR---NGRSVQQAIHE 192

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                    +  ++   I+ + +   G   I  FAI  A G+  +  ++I     I+  +
Sbjct: 193 GYKGAFSSIIDANLTTLITAVILYAVGTGSIKGFAITTAIGVATSMFTAIVGTRAIVNLL 252

Query: 824 YDWRAKNA 831
           Y  +    
Sbjct: 253 YGGKRIKK 260



 Score =  102 bits (253), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 90/218 (41%), Positives = 141/218 (64%), Gaps = 1/218 (0%)

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
            Q+      +I+G      A  L+ +LRAG+L   + IVEER +G  LG  +I +G  A 
Sbjct: 46  IQSRLGNSFRITGISNANEARQLSLLLRAGALIAPIQIVEERTIGPTLGLQNITQGLEAC 105

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG-ATLTLPSIAGIVLGIGLA 427
           + GL+  V FMI+ Y K+G++A  ++  N++L + ++SLL  ATLT+P IAGIVL + +A
Sbjct: 106 LWGLIASVAFMIIYYRKFGVIASTALMANLVLIVGVMSLLPGATLTMPGIAGIVLTLAVA 165

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+N+L+NERI+EE R  +SV  ++  G+  A+S+I D+N+T LI  V+L+  G G+++G
Sbjct: 166 VDANVLINERIKEELRNGRSVQQAIHEGYKGAFSSIIDANLTTLITAVILYAVGTGSIKG 225

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
           FAIT  + +  SMFTAI   RA++  +   K++K + I
Sbjct: 226 FAITTAIGVATSMFTAIVGTRAIVNLLYGGKRIKKLSI 263


>gi|223042344|ref|ZP_03612393.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1) and Heavy
           Metal Efflux (HME) family, permease protein
           [Staphylococcus capitis SK14]
 gi|222444007|gb|EEE50103.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1) and Heavy
           Metal Efflux (HME) family, permease protein
           [Staphylococcus capitis SK14]
          Length = 1058

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 77/682 (11%), Positives = 183/682 (26%), Gaps = 50/682 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + + L  ++  +G + +      +  L+  P                     +     
Sbjct: 12  NKFAIFLMVVLVILGGIYSSA----KLKLELLPDVENPMI---------SVQTTMPGATP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 +    D     L           Q  + +T+ ++D    +   +++   +  + 
Sbjct: 59  QSTEDEISRKIDNQVRSLAYVKSVKTESIQNASIVTVEYSDGTDMDKAEEQLKKEIDKIK 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                      L   +     IV      +       + + E+ +Q I ++         
Sbjct: 119 --FKDGVGDPELTRNSMDAFPIVAYSFTSN--KHDLKDVTKELNQQLIPKLQTINGVQNA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             + +   ++  +     L     T   +  +           +F       S       
Sbjct: 175 QLNGQTNREVTLKFKQDALDDKGLTADDVENYIKTATRETPLGLFQFGKTDKSLVVDGQF 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL--------- 294
           +    +  + +  + A    ++     +   D               G  +         
Sbjct: 235 KSVNALKNLKIPLSIAGQGNQSSDDSNNSDSDNESLMPKENSNSSQSGSKMASSNGKMPS 294

Query: 295 ------------AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
                                                +     +            +  +
Sbjct: 295 VSLKDLADVSVGDNRTSISKTNGKDAVNLQIMKSQDANTVQVAKEVQKKVDEFVKNNKGM 354

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
                          S        A+   + +IV+ + +   +   ++  SI L++++ +
Sbjct: 355 TSTK-TMDTAKPIEDSLYTMVEKAALGTIVAIIVILLFLRNIRTTAISVVSIPLSILIAI 413

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGFSRA 459
             L L   +L + ++  + + IG  +D +I+V E I      + +       +    +  
Sbjct: 414 VALKLSNVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLSDSNETMKGENLIINATTEV 473

Query: 460 YSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
           +  I  S +  ++  + L F     G   R FA+ +  S+L S+  +I++V A+   + R
Sbjct: 474 FKPIMSSTLVTIVVFLPLVFVSGSVGEMFRPFALAITFSLLASLLVSITVVPALGSTLFR 533

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
                      L         I    +  ++  + ISI+  I SI L  T      I   
Sbjct: 534 KGVKTKRQREGLGVISKEYRRILKWSLNHKWIVIVISIVILIGSIGLGATTLGTSYISSG 593

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
               L +        +      +S+       Q +   K+ +  +QY  G    Q     
Sbjct: 594 DNKFLALTYTPKPGETE-----KSVLNHAKEVQKYLDSKDKVQTVQYSVGGPTPQDPTGS 648

Query: 637 MVKKKITEIVPLSTIQNTEIVG 658
                I      +T    E   
Sbjct: 649 TNSMAIMVKYDSNTPHFDEEPD 670



 Score = 95.1 bits (234), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 42/325 (12%), Positives = 106/325 (32%), Gaps = 3/325 (0%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           +      K  KS+ ++   +       + I    A           +  S         N
Sbjct: 216 LGLFQFGKTDKSLVVDGQFKSVNALKNLKIPLSIAGQGNQSSDDSNNSDSDNESLMPKEN 275

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                 G          P       +++          +    +   L  ++ Q  ++V 
Sbjct: 276 SNSSQSGSKMASSNGKMPSVSLKDLADVSVGDNRTSISKTNGKDAVNLQIMKSQDANTVQ 335

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             + ++    +  +     T   T      I   L        + + +A+++ +      
Sbjct: 336 VAKEVQKKVDEFVKNNKGMTSTKTMDTAKPIEDSLYTMVEKAALGTIVAIIVILLFLRNI 395

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                ++ ++ L I   +    L  +  N+  + A+   IG  ++D +VV + + + +  
Sbjct: 396 RTTAISVVSIPLSILIAIVALKLSNVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLSD 455

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVV 807
              ++   +LI  +  E     + +++   +  LP+  V G  G +   FA+ + F ++ 
Sbjct: 456 SNETMKGENLIINATTEVFKPIMSSTLVTIVVFLPLVFVSGSVGEMFRPFALAITFSLLA 515

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +   SI +   +   ++    K  R
Sbjct: 516 SLLVSITVVPALGSTLFRKGVKTKR 540



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 60/145 (41%), Gaps = 6/145 (4%)

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                  + +L   +   +    + G   ++ ++  +L LIG  V + +V+ DR+   +  
Sbjct: 912  LAPFTILFSLPFTVVGVVLALVITGETISVPSLIGMLMLIGIVVTNAIVLIDRV---INN 968

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVV 807
                +  ++ + ++    +   + T++A   +++P+     S I      A  +  G+V 
Sbjct: 969  EKNGLEMKEALIEAGGTRIRPILMTAIATIGALIPLLFGQDSSILISKGLAATVIGGLVS 1028

Query: 808  AASSSIFIAAPILLFIYDWRAKNAR 832
            +   ++ +   I   ++  + K +R
Sbjct: 1029 STILTLIVVPVIYEILFTLKNKLSR 1053


>gi|186471940|ref|YP_001863258.1| acriflavin resistance protein [Burkholderia phymatum STM815]
 gi|184198249|gb|ACC76212.1| acriflavin resistance protein [Burkholderia phymatum STM815]
          Length = 1065

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 75/638 (11%), Positives = 165/638 (25%), Gaps = 45/638 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     ++L  ++  +G L  L     ++  D FP+                  +V   
Sbjct: 8   LRRPYTFIVLAVLLFIVGPLAIL-----RTPTDIFPNIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D  +     Y   L + +              + + + F           +   
Sbjct: 52  NGFSAEDMAHRITSNYERALTTDVDDIEHIESQSLNGVSVVKVFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + ++    + + +                 Q+   
Sbjct: 112 NSASILRVLPPGTLPPNIITYNASTVPVLQLGLSSNTLPEQT--LYDLGNSFIRTQLATI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+    DP  L+      A +       N    G    +     + 
Sbjct: 170 QGAAVPLPYGGKIRQIMVLLDPKALQAKGLAPADVVNAVNAQNLILPGGTAKIGSREYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                      +                     D+    +     +     ++    A  
Sbjct: 230 EMNGSTSTVAAL--------------------NDLPIKTVNGSVVYVRDVAHVIDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    I+    +   + AG                   
Sbjct: 270 TNIVRSDGKRAALLQIEKTGSASTLTIIQQVKAMLPKIAAGLPSALKITPLSDQSVFVKS 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S       I A L   ++ + +   +  L+   SI L V+ +L  L+ LG T+ + ++
Sbjct: 330 AISGVVREALIAACLTAAMILLFLGSWRATLIIAVSIPLAVLTSLIALAALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     K   +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLEKGAPLHDAILNGSGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI-NPLSRFFL 533
           F   G         A  +  ++  S F + ++V  + ++++R             + F  
Sbjct: 450 FLLSGVARYLFVPLAEAVVFAMCASYFFSRTLVPTLAMYLMRVPSKNGRAAQGRFAIFAR 509

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  +F   R     +           +  +              G      VD   
Sbjct: 510 FQARFEHRFDILRNGYHDVLQRAVANRRRFIPVYLALCFASLALIPFAGRDFFPAVDTGE 569

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           +R +L +     I       ++         P    A 
Sbjct: 570 IRLHLRAPTGTRIEQTARITDQVEAKIRSVIPKPEQAA 607



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 79/234 (33%), Gaps = 8/234 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR     +            +      LQ +   S +   +++ VK  + +I        
Sbjct: 256 VRDVAHVIDGYAPQTNIVRSDGKRAALLQIEKTGSASTLTIIQQVKAMLPKIAAGLPSAL 315

Query: 654 TEIVGPKISRELIR--KGIV--GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                   S  +     G+V   +I + +   + +     W   L    ++ L +  +L 
Sbjct: 316 KITPLSDQSVFVKSAISGVVREALIAACLTAAMILLFLGSWRATLIIAVSIPLAVLTSLI 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             A  G   N+  +  +   +G  V+D  V  + +              D I     E  
Sbjct: 376 ALAALGQTINIMTLGGLALAVGILVDDATVAIENI---THHLEKGAPLHDAILNGSGEIA 432

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +  ++++  I  +PM +  G     F +P+A  +V A  +S F +  ++  +
Sbjct: 433 VPTFVSTLSICIVFVPMFLLSGVARYLF-VPLAEAVVFAMCASYFFSRTLVPTL 485



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 64/169 (37%), Gaps = 11/169 (6%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
             G++ +   + + + + F  W   L  ++ L   +              ++ A+   +  
Sbjct: 889  YGLVFAIALVYLLMVVNFQSWLDPLIIVSGLPGSLAGIAWMLFATHTTLSVPALTGTILC 948

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG +  + ++V +  R+++            +D   N      + T++A  I +LPMA+ 
Sbjct: 949  IGIATANSILVINTARESLANGM--EPLAAALDAGFNR-FRPVLMTALAMLIGMLPMALG 1005

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL----LFIYDWRAKNA 831
               GG         +  G+ +   S++     +      ++   RAKNA
Sbjct: 1006 LGDGGEQNAPLGRAVIGGLAIGTVSTLMFVPVVFGMVHAWLAKRRAKNA 1054


>gi|229591369|ref|YP_002873488.1| putative transporter-like membrane protein [Pseudomonas fluorescens
           SBW25]
 gi|229363235|emb|CAY50323.1| putative transport related membrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 1073

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 70/553 (12%), Positives = 154/553 (27%), Gaps = 45/553 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     ++L   IC IG + AL     ++  D FP                   +V + 
Sbjct: 9   LQKPYTFIVLAIFICIIGPMAAL-----RTPTDVFPDIGIPV-----------VAVVWQY 52

Query: 61  DE--DDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +    D + G +    +  L + +                + + F           +VT 
Sbjct: 53  NGLSPDAMAGRVIYTYERSLSTTVNDIEHIESQSLPGMGIVKIFFQPGVDIRTANAQVTA 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q V  ++       L++  +   + I+    +   +          +       +   
Sbjct: 113 VSQTVLKQMPPGITPPLILNYSASTVPILQMAFSSPSLSEA--RIRDLVQNNIRLPLSAL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                         Q+  + DP  L     +   +     L N         +     + 
Sbjct: 171 PGLAMPTPMGGKQRQITLDLDPQALAAKGLSAQDVGNALALQNQIIPVGTAKLGPNEYTI 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +   E+                     D+    +           ++       
Sbjct: 231 LLNNSPKAIDEL--------------------NDLPIKTVDGALITIGQVAHVRDGSPPQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +               IS    I+    +   +     P     +          
Sbjct: 271 TNIVRVDGHRAVLMPALKNGSISTLSIIDGIRQMLPRINETLPPSLKTSLLGDASVFVKQ 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S         I A L   ++ + +   +  ++   SI L V+  +ALL++ G TL + ++
Sbjct: 331 SVGSVAQEGIIAALLTSAMILLFLGSWRSTIIIAASIPLAVLSAIALLAVSGQTLNVMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     + + V  ++  G ++     F S +   I  V +
Sbjct: 391 GGLALAVGILVDDATVTIENINWHLEQGKPVKTAILDGAAQIVGPAFVSLLCICIVFVPM 450

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G   R  A+ +  ++  S   + ++V  + +F+                   I
Sbjct: 451 FLLQGIAGYLFRPMALAVIFAMASSFILSRTLVPTLAMFL-LKPHTPEPGAGHHPEDEFI 509

Query: 535 PDCIAIQFMRARF 547
                 Q  + R 
Sbjct: 510 NHHEGEQHTQQRN 522



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 81/203 (39%), Gaps = 9/203 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               ++L  + + +   +  S + +  +   +    + ++GI+  ++++  +L+++    
Sbjct: 299 DGIRQMLPRINETLPPSLKTSLLGDASVFVKQSVGSVAQEGIIAALLTSAMILLFLG--- 355

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +    ++ L +   +   A+ G   N+  +  +   +G  V+D  V  + +    
Sbjct: 356 SWRSTIIIAASIPLAVLSAIALLAVSGQTLNVMTLGGLALAVGILVDDATVTIENIN--- 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI-PMAFGIVV 807
                    +  I     + +G +  + +   I  +PM +  G  I  +   PMA  ++ 
Sbjct: 413 WHLEQGKPVKTAILDGAAQIVGPAFVSLLCICIVFVPMFLLQG--IAGYLFRPMALAVIF 470

Query: 808 AASSSIFIAAPILLFIYDWRAKN 830
           A +SS  ++  ++  +  +  K 
Sbjct: 471 AMASSFILSRTLVPTLAMFLLKP 493



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 63/162 (38%), Gaps = 5/162 (3%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +G++ + + + + I + F  W      IT L   +   +    L G   ++ A+   +  
Sbjct: 907  LGLLGAVVLIYLLIVVNFQSWSDPFVIITALPAALAGIVWMLFLSGTSLSVPALTGAILC 966

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + ++V    R+  +L     + +  ++            T++A  I +LP+A+ 
Sbjct: 967  MGVATANSILVVSFCRE--RLAEHGDALKAAMEAGYTR-FRPVCMTALAMIIGMLPLAIS 1023

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                       +  G++ A  +++     +   ++  +   A
Sbjct: 1024 EEQN-APLGRAVIGGLIFATLATLLFVPVVFSLVHGRQPTRA 1064


>gi|301309260|ref|ZP_07215204.1| heavy metal efflux pump, CzcA family [Bacteroides sp. 20_3]
 gi|300832942|gb|EFK63568.1| heavy metal efflux pump, CzcA family [Bacteroides sp. 20_3]
          Length = 1027

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 78/673 (11%), Positives = 201/673 (29%), Gaps = 48/673 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVN 67
           L  ++C + L+I        + +D FP       +           ++ E +    + V 
Sbjct: 14  LVILVCALLLMIWGTYTAFNTDVDVFPDLNAPTVV-----------IMTEANGMAPEEVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   +          S     + + + F            V+  L  +   L 
Sbjct: 63  RLVTFPVETAVNGAMDVRRVRSSSTTGFSVVWVEFDWGTDIYRARQIVSEKLAVLGESLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            +  K  L   +     +++     D      ++           ++  +    Q     
Sbjct: 123 GNVGKPTLGPQSSILGEMMILGLTADST--SLLDLRTIADWTIRPRLLSTGGVAQVAVIG 180

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + +     DP+R++       ++       N +  G +                    
Sbjct: 181 GDIKEYQILLDPARMKHYGVGLNEVLDVCRNMNRNANGGVLY------------------ 222

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           E S  ++     +           +           ++    IG     +      T P 
Sbjct: 223 EFSNEYIIRGVLSTSKAEEIAQGVVKTVNEYPVTLGDIATVKIGGKSPKLGTASERTKPA 282

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   +       +   T +   I+  + +     ++++    R       S +  K +  
Sbjct: 283 VLITVTKQPDTSTEKLTEKLDEIVVDLRKNLPTDVRISTDIFRQSHFIDNSINNVKNSLF 342

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             +  V+IVLF+ ++  +  +++  ++ L++++++ +L  +G T+   S+ G+ + IG  
Sbjct: 343 EGSFFVVIVLFLFLMNIRTTVISLVALPLSLLVSIIVLHYMGLTINTMSLGGMAIAIGSL 402

Query: 428 VDSNILVNERIREENR--------KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VD  I+  E + +  R        + +S    +          I +S +  +++ V LFF
Sbjct: 403 VDDAIVDVENVYKRIRENRLLPPEQQRSTLEVVYDASREVRMPILNSTLIIVVSFVPLFF 462

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLI 534
                G  +    I   +++  S   A+++   +  +++  K   MK +    ++R   +
Sbjct: 463 LSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLNRKATGMKELREAWIARKLKV 522

Query: 535 PDCIAIQFMRARFWGV--GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               A++F  A    V      LF +  +              +G   + V +   + L 
Sbjct: 523 VYKRALEFALAYQKWVLGTTIALFVVALVIFFHLGRSFLPPFNEGSFTINVSSLPGISLD 582

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                    +   +             R +            +E   +            
Sbjct: 583 ESDQIGRRAEALLLQVPEIKTVARKTGRAELDEHALGVNVSEIEAPFELQDRSRDEVMND 642

Query: 653 NTEIVGPKISREL 665
             + +       +
Sbjct: 643 VRKKLSTISGANI 655



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/259 (10%), Positives = 81/259 (31%), Gaps = 13/259 (5%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V       +++       +                 V +        +  ++ E + + 
Sbjct: 246 VVKTVNEYPVTLGDIATVKIGGKSPKLGTASERTKPAVLITVTKQPDTSTEKLTEKLDEI 305

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGA 696
           + ++                    I   I  V       S   +++           + +
Sbjct: 306 VVDLRKNLPTDVRISTDIFRQSHFIDNSINNVKNSLFEGSFFVVIVLFLFLMNIRTTVIS 365

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYT 752
           +  L L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N  L  
Sbjct: 366 LVALPLSLLVSIIVLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRIRENRLLPP 425

Query: 753 -TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVA 808
               S  +++  +  E     + +++   +S +P+    G    ++    I     +  +
Sbjct: 426 EQQRSTLEVVYDASREVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGIAFIVALFAS 485

Query: 809 ASSSIFIAAPILLFIYDWR 827
              ++ +   +  ++ + +
Sbjct: 486 TVVALTLTPVLCSYLLNRK 504



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 60/138 (43%), Gaps = 10/138 (7%)

Query: 697  ITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L L +    G     L   E ++ A+   ++L G +  + +++         L    
Sbjct: 893  VILLNLPLALIGGVIILWLTSGEISIPAIIGFISLFGIATRNGMLLISHY---THLRGEG 949

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAAS 810
            +  R+ + +   + L   + T++++ ++++P+A+     G+ I S  A  +  G++ +  
Sbjct: 950  MGLRESVIQGSLDRLNPILMTALSSALALIPLALNGDLPGNEIQSPMATVILGGLLTSTF 1009

Query: 811  SSIFIAAPILLFIYDWRA 828
             + FI  PI+  I +   
Sbjct: 1010 LNGFII-PIVYLIMNKNK 1026


>gi|320643428|gb|EFX12598.1| copper/silver efflux system, membrane component [Escherichia coli
           O157:H- str. 493-89]
 gi|320648763|gb|EFX17390.1| copper/silver efflux system, membrane component [Escherichia coli
           O157:H- str. H 2687]
 gi|320664826|gb|EFX31961.1| copper/silver efflux system, membrane component [Escherichia coli
           O157:H7 str. LSU-61]
          Length = 1045

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 149/599 (24%), Gaps = 45/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +          +      I     +     
Sbjct: 236 YL-------------------QTLDDFNHIVLKASENGVPVYLRDVAKIQVGPEMRRGIA 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L   V+   +   ++  +    I         L++        +           +   
Sbjct: 277 ELNGEVVGGVVI-LRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 336 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 396 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITNASVEVGPALFISLLII 455

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 456 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 515

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 516 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 574



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 761  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 820

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 821  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 878

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 879  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 937

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 938  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 997

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 998  WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1045


>gi|251793925|ref|YP_003008657.1| acriflavine resistance protein [Aggregatibacter aphrophilus NJ8700]
 gi|247535324|gb|ACS98570.1| acriflavine resistance protein [Aggregatibacter aphrophilus NJ8700]
          Length = 1032

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/472 (12%), Positives = 145/472 (30%), Gaps = 26/472 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              V    + + +  F+    +E  +          S     + +T+    +        
Sbjct: 47  VSTVYPGADANLIQAFVTSKIEEAVAQADNVDYMSSSSSPSSSIVTVKMKLNTDPNAALA 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  V S+L    +   + ++T     I+      +++   A + +  I R    Q
Sbjct: 107 DVLAKVNSVRSELPSGIEDPSVTSSTGGS-GIMYISFRSNKL--DASQVTDYIQRVVKPQ 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
               E              L    DP ++     + A +       N           ++
Sbjct: 164 FFTVEGVASVDIFGASEYALRIWLDPKKMAAQNLSAATVRSALSANNVQTAAGNDNGFYV 223

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
              +      +   E+                     ++     G +        ++   
Sbjct: 224 VYKNKVDTTTKSVNELG--------------------NLIVSSDGDKLVRLRDVADVELN 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            +      V           +  +  +     E    L   ++          +   +  
Sbjct: 264 KSSDAARAVANGSDSVVLGINPTSSANPLTVAEKILPLYESIKNNLPDAIQTDILYNSTI 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A   S +    T      +VL+V+ M +   +  L+   +I +++I  + +L  L  ++ 
Sbjct: 324 AINNSINEVVKTIMEATLIVLVVITMFIGSFRAILIPVITIPISLIGVIMMLQSLDFSIN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  ++L IGL VD  I+V E +    +  ++ F +  +G       +    I  +  
Sbjct: 384 LMTLLALILAIGLVVDDAIVVLENVDRHIKLGETPFRAAIIGTREIAVPVISMTIALIAV 443

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              +   G   G   + FA+T+  ++ IS   A+++   M   +++     S
Sbjct: 444 YSPMALMGGITGTLFKEFALTLAGAVFISGIVALTLSPMMTSKLLKDHDKPS 495



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 82/235 (34%), Gaps = 14/235 (5%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            L SL    +  Q     +   +         +  + + + ++        L         
Sbjct: 774  LSSLVSMTLEPQPSSLPRFSQLNSAVISAVPMPGSSIGDAIQWLQDSSKELLPQGYNYDF 833

Query: 658  GPKISRELIRKGIVGV--IISAIAMLIYIWIRFK-WYFALGAITTLILDI------TKTL 708
              +  + +     + V  +++ + + + + I+F+     +  + ++ L I          
Sbjct: 834  KGEARQLVQEGSALAVTFVLAVVIIFLVLAIQFESIRDPMVIMISVPLAISGALLALNAF 893

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
            GF    G   N+ +   ++TL+G      +++ +  ++         S  + I ++    
Sbjct: 894  GFVGKAGATLNIYSQVGLITLVGLITKHGILMCEVAKEE--QLNHGKSRIEAITEAAKVR 951

Query: 769  LGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPIL 820
            L   + T+ A    ++P +   G   +  F+I +    G+ V    ++F+   I 
Sbjct: 952  LRPILMTTAAMIAGLIPLLYATGAGAVSRFSIGIVIVSGLAVGTLFTLFVLPVIY 1006



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/261 (12%), Positives = 89/261 (34%), Gaps = 7/261 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + +    ++ V L  V     +             +   L        + +     + 
Sbjct: 240 GNLIVSSDGDKLVRLRDVADVELNKSSDAARAVANGSDSVVLGINPTSSANPLTVAEKIL 299

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
            + + I   +P +   +            I + +  ++ + + +L+ I      +   L 
Sbjct: 300 PLYESIKNNLPDAIQTDILYNSTIAINNSINEVVKTIMEATLIVLVVITMFIGSFRAILI 359

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            + T+ + +   +          NL  + A++  IG  V+D +VV + +    +      
Sbjct: 360 PVITIPISLIGVIMMLQSLDFSINLMTLLALILAIGLVVDDAIVVLENV---DRHIKLGE 416

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSS 812
           +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++   +
Sbjct: 417 TPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGIVA 476

Query: 813 IFIAAPILLFIYDWRAKNARI 833
           + ++  +   +     K +++
Sbjct: 477 LTLSPMMTSKLLKDHDKPSKL 497


>gi|242238610|ref|YP_002986791.1| heavy metal efflux pump, CzcA family [Dickeya dadantii Ech703]
 gi|242130667|gb|ACS84969.1| heavy metal efflux pump, CzcA family [Dickeya dadantii Ech703]
          Length = 1045

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 60/543 (11%), Positives = 143/543 (26%), Gaps = 49/543 (9%)

Query: 3   NNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            N +LV++   ++   G++      L ++ LD  P       I           +     
Sbjct: 11  RNRFLVLIATLLMAAWGIIA-----LQKTPLDALPDLSDVQVI---------IRVSYPGK 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +                + + F D         +V  +L  
Sbjct: 57  APQVVENQVTYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFEDGTDPYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L  + K +L    T                  +  +           ++    +  
Sbjct: 117 AQSTLPGEAKASLGPDATGVGWIFEY-ALVDRTGKRNLADLRALQDWLLKFELKTVPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     +P RLR    T  ++       N    G +  +           
Sbjct: 176 EVASIGGMVRQYQVVLNPERLRAQNITHQQVIDALQAANQESGGSVIEMGEAEYMVRTSG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                       +     G     +   +    P        
Sbjct: 236 YLLKPED-------------------FRHVVITLRAGIPILLQDVAELRQGPEMRRGVAE 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +   T+         ++    P    +           + S 
Sbjct: 277 LNGEGEVAGGVVILRSGKNALETLHAVKSRLQQIQQSLPPGVEIVTAYDRSPLIERAIST 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V ++  + + + +  LVA  S+ L ++    ++   G    + S+ GI 
Sbjct: 337 LSQKLLEEFIVVALICSLFLFHFRSSLVAIISLPLGILGAFIVMHYQGINANIMSLGGIA 396

Query: 422 LGIGLAVDSNILVNERIR----EENRKNQSVFCSLDMGFSRAYSTIFDSN---------- 467
           + IG  VD+ I++ E +     +   ++     + D  ++ A     +            
Sbjct: 397 IAIGAMVDAAIVMIENMHKVVEQWRHQHPDEEPAADTWWALATQAATEVGPALFCSLLII 456

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
             + I    L    G      A T   ++ +S    I++V  +M + +R +         
Sbjct: 457 TLSFIPVFSLEAQEGRMFSPLAFTKTYAMAVSAGLGITLVPVLMGYFVRGRIPDEQSNPI 516

Query: 528 LSR 530
              
Sbjct: 517 NRW 519



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 84/263 (31%), Gaps = 14/263 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   +   V LS +     S     +  +N        V L+ +   S  +    ++ +
Sbjct: 786  PVVTRSGARVTLSELADIRISEGPPMLKSENSRLSNWIYVDLRGRDLKSAVEDMQQQVAR 845

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            +         +                 K  + V  + + + I +++ F K   AL  + 
Sbjct: 846  QVTLPQGVSVSWSGQFEYL----ERATEKMKLVVPFTLLIIFILLYVTFGKIKDALLIMG 901

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            TL   +   +      G   ++      + L G +    V++   +   ++ Y    S  
Sbjct: 902  TLPFALIGGVWLLYGLGYNLSVAGAVGFIALAGVAAEFGVIMLLYLNHAVEKYRRPESPL 961

Query: 759  D------LIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAA 809
                    I +     +   + T       +LP+   GG    ++   A PM  G++ A 
Sbjct: 962  QYDQLLTAIREGAVLRVRPKMMTVATIMAGLLPIMRGGGTGSEIMQRIAAPMMGGMISAP 1021

Query: 810  SSSIFIAAPILLFIYDWRAKNAR 832
              S+ +   + L ++    +  +
Sbjct: 1022 LLSMLVIPAVFLLLHRPSRREDK 1044



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 99/291 (34%), Gaps = 13/291 (4%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S++    +  ++ T G     +    + + + A  P+ L  V    +  ++     +   
Sbjct: 220 SVIEMGEAEYMVRTSGYLLKPEDFRHVVITLRAGIPILLQDVAELRQGPEMRRGVAELNG 279

Query: 613 GEKNFLVRLQYQPGDSVAQT--RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
             +     +  + G +  +T   V   +++    + P   I       P I R +     
Sbjct: 280 EGEVAGGVVILRSGKNALETLHAVKSRLQQIQQSLPPGVEIVTAYDRSPLIERAISTLSQ 339

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +    +  LI     F +  +L AI +L L I          GI  N+ ++  +   I
Sbjct: 340 KLLEEFIVVALICSLFLFHFRSSLVAIISLPLGILGAFIVMHYQGINANIMSLGGIAIAI 399

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRD--------LIDKSINETLGRSVYTSMAAFIS 782
           G  V+  +V+ + M K ++ +       +        L  ++  E       + +   +S
Sbjct: 400 GAMVDAAIVMIENMHKVVEQWRHQHPDEEPAADTWWALATQAATEVGPALFCSLLIITLS 459

Query: 783 VLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +P+          F   A    + + V+A   I +   ++ +    R  +
Sbjct: 460 FIPVFSLEAQEGRMFSPLAFTKTYAMAVSAGLGITLVPVLMGYFVRGRIPD 510


>gi|55980698|ref|YP_143995.1| AcrB/AcrD/AcrF family efflux transporter [Thermus thermophilus HB8]
 gi|55772111|dbj|BAD70552.1| probable efflux transporter, AcrB/AcrD/AcrF family [Thermus
           thermophilus HB8]
          Length = 1099

 Score =  128 bits (320), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 49/470 (10%), Positives = 119/470 (25%), Gaps = 29/470 (6%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                     + V   +    ++  S L    +   S  +  + + + F      +  A 
Sbjct: 50  ISTSYPGAGPEEVAEQVSKPLEDALSTLTGVDVIGSSSTEGFSLVFVQFKQGVDVDQGAV 109

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           + +  +  + S L  D    ++         I+              E      R    +
Sbjct: 110 EASQKVAAIRSTLPKDASAPVVQKFDPSASPILYLALEAPG--EDLAEVLRYAERTLKPR 167

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           + +         +      +    DP RL+ L     ++         +           
Sbjct: 168 LQLVSGVADIRLTGAPKTAIKVYLDPDRLQALGIPPLQVVQALSASALNLPLG----ALT 223

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            +     Y +      +                             R         + + 
Sbjct: 224 EEERRLVYTLRATPRTASEVAEVLV------------------DPGRGIRVRDVARVEEA 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                    +                +     +              P     V      
Sbjct: 266 REAPTTLNRVNGRPAVVLAVVKTPDANAVAVAQEVRRALEETS--LPPGYRAEVALDTTR 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +         + A  V +V+ + +           +I + +   + L  +LG T  
Sbjct: 324 FIQAAVEDTVREAFLAALAVSLVVLVFLGKLNSVFSVILAIPITLSGAILLFGVLGFTYN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L S+  + + +G+ VD +I+V E I    R    +  ++  G S   + +  + ++ L  
Sbjct: 384 LISLLALTVAVGIVVDDSIVVAENIDRYRRMGLGLKEAVLKGASEVSAAVAAATLSLLAV 443

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            + + F     G   + F + M  +I +S   A+  +   + +       
Sbjct: 444 FLPISFLPGLIGQIFQQFGLGMAAAIGVSWLEALLFLTVRLAYFPDPDPP 493



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + +  +P    A     E+ +      +    ++         + EL     +   ++ +
Sbjct: 884  ININLKPEAPGALQVQAELEQDLRAAGLLGDGVELVASGLGSFTEELASLAPLAFGLALV 943

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
               + I  +F  W + L  +  + L +          G   ++ +V  V+ LIG    + 
Sbjct: 944  LNYLVIASQFNAWRYPLYLLLPVPLALVGAFWLTYFLGTGLDVISVLGVVMLIGLVTKNA 1003

Query: 738  VVVYD----RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            +++ D    RMR+           ++ + ++    L   + T++   I  LP+ +    G
Sbjct: 1004 ILLLDFASRRMRE--------KPLKEALVEAARLRLRPILMTTLTVLIISLPLLLGAGEG 1055

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                    + +  G++ +   ++F+       +    A+  
Sbjct: 1056 SEYRRPLGVVILGGMLSSTLLTLFVVPAAFFAVEGRLARKG 1096



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 75/232 (32%), Gaps = 14/232 (6%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR      +  +             V L            V + V++ + E       + 
Sbjct: 256 VRDVARVEEAREAPTTLNRVNGRPAVVLAVVKTPDANAVAVAQEVRRALEETSLPPGYRA 315

Query: 654 TEIVGPK--ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              +     I   +        + +    L+ +    K       I  + + ++  +  F
Sbjct: 316 EVALDTTRFIQAAVEDTVREAFLAALAVSLVVLVFLGKLNSVFSVILAIPITLSGAILLF 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINET 768
            + G  +NL ++ A+   +G  V+D +VV    DR R         +  ++ + K  +E 
Sbjct: 376 GVLGFTYNLISLLALTVAVGIVVDDSIVVAENIDRYR------RMGLGLKEAVLKGASEV 429

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                  +++     LP++      G +   F + MA  I V+   ++    
Sbjct: 430 SAAVAAATLSLLAVFLPISFLPGLIGQIFQQFGLGMAAAIGVSWLEALLFLT 481


>gi|331661937|ref|ZP_08362860.1| cation efflux system protein CusA [Escherichia coli TA143]
 gi|331060359|gb|EGI32323.1| cation efflux system protein CusA [Escherichia coli TA143]
          Length = 1047

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 171/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIIVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRAYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPMLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|310820423|ref|YP_003952781.1| acriflavin resistance family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393495|gb|ADO70954.1| Acriflavin resistance family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1029

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 81/668 (12%), Positives = 181/668 (27%), Gaps = 39/668 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +    +L + I   G          Q  +   P       I++  +L G         
Sbjct: 9   RRSVATTLLATAILLAGA-----TAYTQLPVAPLPRVDFPT-INVSANLPG--------A 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +     +        +       ITL F   R  +     V   +  
Sbjct: 55  SPRTMASAVATPLERRFGRIAGVNEITSTSTLGSTSITLQFDLDRDVDAAGRDVQAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +              + +L    +        +           +I       
Sbjct: 115 AGGELPTNLPSRPTYRKVNPADAPILI-LALTSPTLPLAQIYDAANSVLAQKIAQVPGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q          +  + DP  L  +      +       +  +   +              
Sbjct: 174 QVFVGGGQNPAVRVQVDPMALAGVGLGLEDVRAALAQASIDRPKGVLNGP---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           DI                 + + +       
Sbjct: 224 ----------QQAMVLAATDQLLEAPLYEDIVLAFNNGAPVRLRDVGRVFQGVENERVAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I   +   +    IE    L   L     P     V      +   S S 
Sbjct: 274 WTDGQRSISLIIRRQPGANVIDVIERVKALLPSLSNSISPAIDVKVVLDRSSSIRASVSD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K +  +   LV+ V+F+ +   +  ++   S+ L +I T A++ L G ++   S+  + 
Sbjct: 334 VKLSLLLSVALVVWVVFVFLRSARATVIPSVSVPLALIGTFAVMYLCGYSIDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  +D  I+V E I     +  +   +   G  +   TI    ++ L   + L   G
Sbjct: 394 ISTGFVIDDAIVVTENIARYVEQGDTPLQAALRGTKQIGFTIISITVSLLAVFIPLLLMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FA+T+ ++I+ S   ++++   +   ++R   ++  D        L+    
Sbjct: 454 GIVGRLFREFAVTLSVAIMTSALVSLTLTPMLAARLLRRTAVRKHDWFESVFQRLLNAYD 513

Query: 539 AIQFMRARFWGVG-ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
               +  R   V  + +  ++     L+          +    L  +++ P D+S     
Sbjct: 514 RALSVVLRHPAVTLLVLAATVTFNIYLYVVVPKGLFPQQDTGALTGISDGPQDISFPAMM 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
                  +I  ++                   A   +    +++ +    ++ +++    
Sbjct: 574 ERQEAANEIIRRHPAVSHYTAFIGGSTLNTGNAFIELKPAHQRRQSSDQVIAELRSQLSR 633

Query: 658 GPKISREL 665
            P I   L
Sbjct: 634 TPGIQVFL 641



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              +    ++ L +  T     L G   +  ++ A+    G+ ++D +VV + +    + 
Sbjct: 357 RATVIPSVSVPLALIGTFAVMYLCGYSIDNLSLMALTISTGFVIDDAIVVTENI---ARY 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
                +      +   +     +  +++     +P+ + GG V      FA+ ++  I+ 
Sbjct: 414 VEQGDTPLQAALRGTKQIGFTIISITVSLLAVFIPLLLMGGIVGRLFREFAVTLSVAIMT 473

Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831
           +A  S+ +   +   +    A   
Sbjct: 474 SALVSLTLTPMLAARLLRRTAVRK 497



 Score = 39.7 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 65/156 (41%), Gaps = 7/156 (4%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            ++   +   +   L  ++TL       L    LFG+E ++ A+  ++ LIG    + +++
Sbjct: 862  IVLGVLYESYVHPLTILSTLPSAGVGALLALMLFGMELSIIALIGIILLIGIVKKNGILM 921

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA-AFISVLPMAV---WGGSVIGS 796
             D   +     +  +S R+ I  +        + T++A   +  LP+A+    G      
Sbjct: 922  VDFALE--AERSQGLSVREAIHGACLVRFRPILMTTLAA-ILGGLPLALGHGSGSEFRRP 978

Query: 797  FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              + +  G++++   ++F    + L +     + AR
Sbjct: 979  LGVAIVGGLILSQLLTLFSTPAVYLVLGGLARRRAR 1014


>gi|260853825|ref|YP_003227716.1| copper/silver efflux system protein CusA [Escherichia coli O26:H11
           str. 11368]
 gi|257752474|dbj|BAI23976.1| copper/silver efflux system protein CusA [Escherichia coli O26:H11
           str. 11368]
 gi|323153714|gb|EFZ39962.1| cation efflux system protein cusA [Escherichia coli EPECa14]
          Length = 1047

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 154/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +       +  P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVLIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|254481588|ref|ZP_05094832.1| RND transporter, HAE1/HME family, permease protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038216|gb|EEB78879.1| RND transporter, HAE1/HME family, permease protein [marine gamma
           proteobacterium HTCC2148]
          Length = 1063

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/556 (12%), Positives = 162/556 (29%), Gaps = 41/556 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L++++   G++  +   +        P           L   G  H    +  DD     
Sbjct: 18  LFAVLVLAGIMARIALPIANDPHVELP-----------LFYVGVVHD--GISPDDAERLL 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +Q    ELR  L+       +  +      + F  S+       +V   +    +++   
Sbjct: 65  VQPMEAELRK-LEGVVELKSTAAEGMASFFVEFDVSQDLGRAVAEVREAVNRARAEIPAT 123

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            ++  +   T     ++             + Q+   +R   D+I    S +        
Sbjct: 124 AEEPFVEELTADAFPMLQVNFIKGTTSEREVYQAALKLR---DEIESIPSVLSADLQGHR 180

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              L    +P  L     ++ ++       N         +   R +     +VE     
Sbjct: 181 EEVLEVVINPDALNTYRISSEQLITTLQRNNRLIPAGSVDLDDGRFAVKVPAVVESS--- 237

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                              V+ I     G           + +                 
Sbjct: 238 -----------------DDVLSIPIRTSGEAAVTLKDVATVRRTFKDRASHARYNGRETI 280

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 +A  +   ++          RA        IV +      +      +G     
Sbjct: 281 SIDVKKRANANVIDSVAQVLKSVDATRASLPAGMELIVSQNQAEFAMVQVRELEGNILTA 340

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV++++   + +   GLV    I  +++ ++ ++ LLG T     + G++LG+G+ +D
Sbjct: 341 LALVMVLVVAAMGFR-SGLVVGLGIPFSLLFSVIVIYLLGYTFNFMVMFGMLLGLGMLID 399

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
             I+V E       +      +      R +  +  S  T L A + + F+ G + +   
Sbjct: 400 GGIVVTEYANRMMAEGWDHREAYAESVKRMFWPVTASTATTLAAFLPMLFWPGVSGQFMG 459

Query: 490 ---ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
              +T+   ++ S+F A+     +   + R     +  +   ++           F    
Sbjct: 460 YLPVTVFTVLIGSLFYALLFGPVLGSLLGRPSAQSARALRDQTQLESGDPTQLKTFTGYF 519

Query: 547 FWGVGISILFSICSIC 562
              + +       ++ 
Sbjct: 520 ARLLTVVCARPGFTMV 535



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 79/240 (32%), Gaps = 10/240 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMVKKKITEIVPL 648
           D++ VR   +                +   R      DSVAQ  + ++  +  +   + L
Sbjct: 257 DVATVRRTFKDRASHARYNGRETISIDVKKRANANVIDSVAQVLKSVDATRASLPAGMEL 316

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
              QN         REL    +  + +  + ++  +  R      LG   +L+  +    
Sbjct: 317 IVSQNQAEFAMVQVRELEGNILTALALVMVLVVAAMGFRSGLVVGLGIPFSLLFSVIVI- 375

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               L G  FN   +  +L  +G  ++  +VV +      ++       R+   +S+   
Sbjct: 376 ---YLLGYTFNFMVMFGMLLGLGMLIDGGIVVTE---YANRMMAEGWDHREAYAESVKRM 429

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAI--PMAFGIVVAASSSIFIAAPILLFIYDW 826
                 ++     + LPM  W G             F +++ +     +  P+L  +   
Sbjct: 430 FWPVTASTATTLAAFLPMLFWPGVSGQFMGYLPVTVFTVLIGSLFYALLFGPVLGSLLGR 489



 Score = 44.7 bits (103), Expect = 0.073,   Method: Composition-based stats.
 Identities = 30/169 (17%), Positives = 68/169 (40%), Gaps = 19/169 (11%)

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN-LTAVAAVLTL 729
               ++   M I +  +F  +Y +   +  +++     L    + G  F+ L     +L L
Sbjct: 867  AFSLALALMFILLVTQFNNFYQSTLILAAVVMSTAGVLLGLLVLGNPFSALLTGVGILAL 926

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
             G  VN+ +++ D      +L+   +  R LI ++  + L   + T++     +LP+A  
Sbjct: 927  AGIVVNNNIILIDTFNHLSRLHP-ELDSRTLIVRATAQRLRPVLLTTVTTVCGLLPLACG 985

Query: 789  WGGSVIG--------------SFAIPMAFGIVVAASSSIFIAAPILLFI 823
            +   +I                 +  + FG+  A   ++ +A P +L +
Sbjct: 986  YSVDLISRTITAEGEMAIFWGPLSQAIVFGLTFATVLTL-VATPAMLAL 1033


>gi|325053912|pdb|3NE5|A Chain A, Crystal Structure Of The Cusba Heavy-Metal Efflux Complex
           From Escherichia Coli
          Length = 1054

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 14  RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 63

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 64  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 123

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 124 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 183 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 243 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 284

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 285 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 344

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 345 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 404

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 405 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 464

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 465 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 524

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 525 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 583



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 770  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 829

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 830  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 887

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 888  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 946

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 947  FGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 1006

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1007 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1054


>gi|227873747|ref|ZP_03991977.1| RND superfamily resistance-nodulation-cell division antiporter
           [Oribacterium sinus F0268]
 gi|227840427|gb|EEJ50827.1| RND superfamily resistance-nodulation-cell division antiporter
           [Oribacterium sinus F0268]
          Length = 1017

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 68/609 (11%), Positives = 173/609 (28%), Gaps = 47/609 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R      ++   +   G +           ++  P+      I                
Sbjct: 9   LRRPVTTFLVVITLIFFGFVT-----FTTMKMELLPNMNFPYLI---------VTTTYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V+  +    +E  S L           +  + + + +          D +   + 
Sbjct: 55  ASPEDVDELVTKPVEEEVSLLSDVKQVRSQSNENFSMVIVRYNYGTNMTKAYDSLKKKMD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S L  D K   ++         ++   N         +    +      +     + 
Sbjct: 115 AIKSSLPEDAKDISIMEVDINARPGMVLSINNKNES----QLYNYVENNIRPEFEKLSTV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  E  P +L+Q   T  ++         +       V          
Sbjct: 171 ASLSLSGGQESYVRVELSPEKLQQYHLTMEQVVGMMQAAKFTYPAGSTKV---------- 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G      +   D  T + +  +                 +G  L+     
Sbjct: 221 ----------GDQELSISTAQDYSTIEELRKLPITTGTGNTLTLSDFATVGSALSDKSSI 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        +     S     +    L   L   +       V   +  +   S S
Sbjct: 271 GRYNGEETITLSLNKLQSKSDIAMSKDVNTLIKKLEGKNP-NLEIHVISDSADSIKSSLS 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   + ++++F+     K  L+   SI L ++  +  +  +G +L + +++ +
Sbjct: 330 SVFQTMIMAVVISMLIIFLFFGDIKASLIVGSSIPLAILGAVVFMGAMGYSLNMLTLSAL 389

Query: 421 VLGIGLAVDSNILVNERIREENR----KNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           VLG+G+ VD++I+V E           + +S+  +         +++F   +T  +  + 
Sbjct: 390 VLGVGMMVDNSIVVLEACFRAMDDYGEQQRSLREAAIDSVRVVGASVFGGTLTTCVVFLP 449

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L F     G   +    T+   ++ S+ +A++IV          +  K++    +     
Sbjct: 450 LGFLQGISGQYFKPLGFTIVFCMVASLISAVTIVPLCFTLYKPKENSKAVAYRGVRLLQD 509

Query: 534 IPDCIAIQFMRARF-WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                  +F+R +    V  + +  +                  G +++G+     + + 
Sbjct: 510 AYRNTISKFLRHKKVVLVATAGILVLSLFLATQLRTELMADIDTGTVEIGITQKPGLSIE 569

Query: 593 VVRSNLESL 601
                ++ L
Sbjct: 570 EKERVIKEL 578



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 97/272 (35%), Gaps = 10/272 (3%)

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                             +    P    V   +L +++  D        +K +   +    
Sbjct: 752  WVNYPKDQFDSLEKVKSIRFTTPTGAQVSLESLATVKYADSPASIEREDKKYQATITANY 811

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             DS       E+       +    ++        +   E        + I+   + + + 
Sbjct: 812  TDSANSNTKAEIDDLVSKNLGENISVVANSQ--TQSMNEEFADLFRAIAIAVFLVFVVMA 869

Query: 686  IRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
             +F+   F+   +TT+   +  + G   LF    ++T++   L L+G  VN+ ++  D  
Sbjct: 870  AQFESTRFSFMVMTTIPFSLIGSFGLLWLFDATLSMTSLLGFLMLVGTVVNNGILYVD-- 927

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WG--GSVIGSFAIPM 801
               +  Y   +     + +S    L   + T++   +S++PMA+ +G  G+++   A+  
Sbjct: 928  --TVNQYRQEMPLEKALTESGATRLRPILMTTLTTVLSMIPMAMGFGDNGALMQGLALVN 985

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              G+V +   ++ +     + IY  +    ++
Sbjct: 986  VGGLVASTLLALLLLPVYYMIIYGRKKHRIKV 1017



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 96/296 (32%), Gaps = 5/296 (1%)

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            M+A  +               + T      I+    + +       + LS   +   +L
Sbjct: 205 MMQAAKFTYPAGSTKVGDQELSISTAQDYSTIEELRKLPITTGTGNTLTLSDFATVGSAL 264

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                  +    E   L   + Q    +A ++ +  + KK+    P   I         I
Sbjct: 265 SDKSSIGRYNGEETITLSLNKLQSKSDIAMSKDVNTLIKKLEGKNPNLEIHVISDSADSI 324

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
              L       ++   I+MLI          +L   +++ L I   + F    G   N+ 
Sbjct: 325 KSSLSSVFQTMIMAVVISMLIIFLFFGDIKASLIVGSSIPLAILGAVVFMGAMGYSLNML 384

Query: 722 AVAAVLTLIGYSVNDKVVVYDR-MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            ++A++  +G  V++ +VV +   R          S R+    S+          ++   
Sbjct: 385 TLSALVLGVGMMVDNSIVVLEACFRAMDDYGEQQRSLREAAIDSVRVVGASVFGGTLTTC 444

Query: 781 ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +  LP+       G         + F +V +  S++ I  P+   +Y  +  +  +
Sbjct: 445 VVFLPLGFLQGISGQYFKPLGFTIVFCMVASLISAVTIV-PLCFTLYKPKENSKAV 499


>gi|17158767|ref|NP_478278.1| cation efflux system protein [Nostoc sp. PCC 7120]
 gi|17134716|dbj|BAB77274.1| cation efflux system protein [Nostoc sp. PCC 7120]
          Length = 1041

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/598 (11%), Positives = 178/598 (29%), Gaps = 52/598 (8%)

Query: 1   MRNNPWLVILY--SMICCIGLLIALPNFL--PQSMLDRFPSAMPKNRISLGLDLRGGSHL 56
           M N      +    ++    +++ +       Q  LD FP   P               +
Sbjct: 1   MLNAILKWSIIQRWIVVLGAIVVTIWGTYNLTQMPLDVFPDFAPP-------------QV 47

Query: 57  VLEVDEDDFVNGFLQMYSD-ELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIA 112
            ++ +        ++      + S +           S     + + + F          
Sbjct: 48  EIQTEAPGLAPEEVETLITLPIESAVNGTPGVETVRSSSAVSISVVKVIFKWGTDVYQAR 107

Query: 113 DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
             VT  LQ V  KL    +   +   +    +++      +      +E    + +   +
Sbjct: 108 QLVTERLQQVQQKLPEGVENPQISPISSPIGTVLQYAFTAETTP--LMEVRRLVDQDVTN 165

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           ++       Q +     + Q     DP++L+    T  +++                   
Sbjct: 166 RLLAVPGISQVIAYGGDIRQYQILVDPAKLKAFNVTLDEVTAAAK--------------- 210

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                G          ++             ++ + +   +               ++  
Sbjct: 211 -----GANVNAAGGFLVNPDQELIIRGLGRIESIEQLGKSAITARNGTPVLLQDVADVSI 265

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
             A+      L        + + + Q       +      A ++ G           R  
Sbjct: 266 GAALKRGDGSLNGQPAIVVMVNKQPQNDTPTVTKAVEKAIAEIKVGLPKDVKVTETFRQE 325

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                +      +      +V I+L M ++  +  ++   +I L+V++ + +L L G  +
Sbjct: 326 NFIEAAIENVTSSLRDGIIIVSIILLMFLMNWRTAIITLSAIPLSVLIGMMILGLFGQGI 385

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDS 466
              ++ G+ + IG  VD +I+  E      RKNQ        F  +         ++  S
Sbjct: 386 NTMTLGGLAVAIGSVVDDSIVDMENCYRGLRKNQVASNPVHPFKVVYDTSVEVRVSVIFS 445

Query: 467 NITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +   +    +F      G       +   +SI  S   A+++  A+   ++  +++ + 
Sbjct: 446 TVIIGVVFAPIFTLTGVEGRIFAPMGVAYLVSIFASTLVAMTLSPALCAILLANRQLPAD 505

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           D    +    I   +    +R     + ++    + S+ +L + G  +  +F+    +
Sbjct: 506 DTWISALSQRIYRPLVNFSIRFPTIILVVAGASLVASLVILPSLGRVFLPEFQEPSLV 563



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 96/254 (37%), Gaps = 17/254 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + L+ V S         I+ +N          +  +   S  +    ++ +
Sbjct: 776  LVDTPTGQKIPLAQVASIDYGTGPNTINRENVSRLIVVSANVSGRDLGSAVEEIQSKVRE 835

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                                + ++ L+  G + ++I  IA+L+Y  +      ++ A+  
Sbjct: 836  TVQLPTGYFIQYGGQFESEQRATQNLLVFGGLALVI--IAVLMYFAV-----KSVAAMLM 888

Query: 700  LILDI--TKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +++++      G F++   G   ++ ++   +TL G +  + +++ D            +
Sbjct: 889  IMINLPLALVGGIFSIALGGGIISVASLVGFITLFGVATRNGLLLVDNYN---GKIAQEM 945

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSS 812
              + +I +   E L   + T++ + + ++P+ +    G  ++   A+ +  G+  + + +
Sbjct: 946  PLQQVIFEGSMERLVAILMTALTSALGMIPLVIGTGAGKEILQPLAVVVLGGLFTSTALT 1005

Query: 813  IFIAAPILLFIYDW 826
            + +   +      +
Sbjct: 1006 LMVLPALYAKFGKF 1019



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 80/263 (30%), Gaps = 9/263 (3%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G   +      PV L  V        +              ++  +    D+   T+ +E
Sbjct: 243 GKSAITARNGTPVLLQDVADVSIGAALKRGDGSLNGQPAIVVMVNKQPQNDTPTVTKAVE 302

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALG 695
               +I   +P                  I      +    I + +I +     W  A+ 
Sbjct: 303 KAIAEIKVGLPKDVKVTETFRQENFIEAAIENVTSSLRDGIIIVSIILLMFLMNWRTAII 362

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MRKNMKLY 751
            ++ + L +   +    LFG   N   +  +   IG  V+D +V  +     +RKN    
Sbjct: 363 TLSAIPLSVLIGMMILGLFGQGINTMTLGGLAVAIGSVVDDSIVDMENCYRGLRKNQVAS 422

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGIVVA 808
                F+ + D S+   +     T +   +   P+    G     FA   +     I  +
Sbjct: 423 NPVHPFKVVYDTSVEVRVSVIFST-VIIGVVFAPIFTLTGVEGRIFAPMGVAYLVSIFAS 481

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
              ++ ++  +   +   R   A
Sbjct: 482 TLVAMTLSPALCAILLANRQLPA 504



 Score = 38.9 bits (88), Expect = 3.3,   Method: Composition-based stats.
 Identities = 57/519 (10%), Positives = 148/519 (28%), Gaps = 31/519 (5%)

Query: 11   YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDFV 66
              ++     L+A    LP       P     + ++  L L  GS L          +D +
Sbjct: 530  IILVVAGASLVASLVILPSLGRVFLPEFQEPSLVNTVL-LYPGSSLEATNQVGFALEDAL 588

Query: 67   NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
                +  + +LR+           +      + LS    + +E   +K+      +    
Sbjct: 589  KDDKRFKTVQLRAGRAAGDADAGGVNLGHLDVELSAEGLKDREGSIEKLREEFAKIPGVA 648

Query: 127  NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                    +    ++ +S V S   +        +        +    GI+     +L  
Sbjct: 649  PNIGG--FISHRMDEVLSGVRSAIAVKIFGPDLAQLRHIGSEVQSAMTGINGLVDLQLEP 706

Query: 187  HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
               + Q+  + +     +   T   ++       N +                   ++ +
Sbjct: 707  QVPIRQVQIQFNREAAARYGLTVGNLTEMVETALNGQVVSQVLKDQQLFDLVVWLQLKSR 766

Query: 247  VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
              +  I           K     V       G           +                
Sbjct: 767  NNLDIIRNLLVDTPTGQKIPLAQVASIDYGTGPNTINRENVSRL---------------- 810

Query: 307  VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            ++  A  SG+   S    I++       L  G         E                  
Sbjct: 811  IVVSANVSGRDLGSAVEEIQSKVRETVQLPTGYFIQYGGQFESEQRATQNLLVFG----- 865

Query: 367  AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
             +   ++ ++++  V      L+   ++ L ++  +  ++L G  +++ S+ G +   G+
Sbjct: 866  GLALVIIAVLMYFAVKSVAAMLMIMINLPLALVGGIFSIALGGGIISVASLVGFITLFGV 925

Query: 427  AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGG 483
            A  + +L+ +    +  +   +   +  G       I  + +T+ +  + L      G  
Sbjct: 926  ATRNGLLLVDNYNGKIAQEMPLQQVIFEGSMERLVAILMTALTSALGMIPLVIGTGAGKE 985

Query: 484  AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             ++  A+ +   +  S    + ++ A+     ++   K 
Sbjct: 986  ILQPLAVVVLGGLFTSTALTLMVLPALYAKFGKFLLPKR 1024


>gi|332760838|gb|EGJ91126.1| cation efflux system protein cusA [Shigella flexneri 4343-70]
 gi|333007963|gb|EGK27439.1| cation efflux system protein cusA [Shigella flexneri K-218]
          Length = 1047

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPKMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMPFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 95/288 (32%), Gaps = 16/288 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI--LLFIYDWRAKN 830
                 G  V+   A PM  G++ A   S+FI      L++++  R +N
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRN 1047


>gi|332341915|gb|AEE55249.1| cation efflux system protein CusA [Escherichia coli UMNK88]
          Length = 1047

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKTMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|117928548|ref|YP_873099.1| preprotein translocase subunit SecD [Acidothermus cellulolyticus
           11B]
 gi|117649011|gb|ABK53113.1| protein-export membrane protein SecD [Acidothermus cellulolyticus
           11B]
          Length = 605

 Score =  127 bits (319), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 126/579 (21%), Positives = 218/579 (37%), Gaps = 73/579 (12%)

Query: 2   RNNPW-LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           R +     +L + +    L   +                      LGLDLRGG+ + L  
Sbjct: 5   RRSRPSRGLLTTGVVLAALYGGMAATGHYGP-------------QLGLDLRGGTTVTLAA 51

Query: 61  DE---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF---KENIADK 114
                    +  L    + LR+ +   G+    +      I +S          + I + 
Sbjct: 52  KPNPGQKVTSSELNTAVNILRNRVNGLGVANADVHTEGTNIVISVPGKDKQGVLDKIGET 111

Query: 115 VTLFLQGV---NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             L ++ V   N  +        L  T         S ++                    
Sbjct: 112 ALLSIRQVYASNDPVMTGVTAPGLSATPSASPPPAASSSSSASPSPSPSPSPSGAASPAT 171

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQ--------------------------------DP 199
            +   S + +    +  I +     Q                                +P
Sbjct: 172 PKPSASSAGLGVGRTPGIQLAGFVRQAASAASSAATASPSPAPTASPAAPSPSPSPAANP 231

Query: 200 SRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG-------- 251
                    TA                    +     D  ++LV       G        
Sbjct: 232 GYYAVPNAETAPTPQEIAAYQALDCTKPENQKGGITDDPAKFLVTCGNVDGGWYKFLLYP 291

Query: 252 ------IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
                    + +         +  V ++     A R+ + T  N+ K  A+VLDG V++A
Sbjct: 292 TLIEGKEIASASAQLDPQTGTQWTVQLTMKSGAASRWAKFTAANVNKDTAIVLDGLVMSA 351

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
             I +AIP+GK QISGNFT +TA  LA +L+ G+LP++        V A LG+  +  G 
Sbjct: 352 EYIAEAIPNGKTQISGNFTHKTASELANVLKYGALPLRFEQQSAETVSATLGNSELRAGL 411

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA----TLTLPSIAGIV 421
            A + GL+L++L+ I  Y    LV   S+ L+  +   LL LLG     TLTL  IAG++
Sbjct: 412 LAGMLGLLLVILYSIFYYRGLSLVTVSSLALSAAIQYPLLVLLGQGIGYTLTLAGIAGLI 471

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G+  DS ++  ER+R+E R+  S+  +++ G+ +A  TI  +++ +LIA ++L++  
Sbjct: 472 VAVGVTADSFVVFFERLRDEVREGNSLRSAVEKGWLQARRTIVSADLVSLIAAIILYWLA 531

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            G VRGFA T+GLS ++ +F   +  + ++  + R    
Sbjct: 532 VGDVRGFAFTLGLSTIVDLFIVFAFTKPLVTLLSRTDFF 570



 Score = 89.8 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 69/181 (38%), Gaps = 8/181 (4%)

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
              Q+ E V   +    +R G++  ++  + +++Y    ++   +L  +++L L      
Sbjct: 390 FEQQSAETVSATLGNSELRAGLLAGMLGLLLVILYSIFYYR-GLSLVTVSSLALSAAIQY 448

Query: 709 GFFALFG----IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
               L G        L  +A ++  +G + +  VV ++R+R  ++      S R  ++K 
Sbjct: 449 PLLVLLGQGIGYTLTLAGIAGLIVAVGVTADSFVVFFERLRDEVRE---GNSLRSAVEKG 505

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +     V   + + I+ + +       +  FA  +    +V          P++  + 
Sbjct: 506 WLQARRTIVSADLVSLIAAIILYWLAVGDVRGFAFTLGLSTIVDLFIVFAFTKPLVTLLS 565

Query: 825 D 825
            
Sbjct: 566 R 566


>gi|265752184|ref|ZP_06087977.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263236976|gb|EEZ22446.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 1026

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/688 (9%), Positives = 187/688 (27%), Gaps = 54/688 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    +++ ++    +GL+           +   P                   + +++
Sbjct: 6   LQRPIAVLMAFTACFIVGLVT-----YFSLPVSLLPDIAIP-------------QITIQM 47

Query: 61  DEDDFVNGFLQM-YSDELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
             ++     L+      +R     +          R     I L F      +    +V 
Sbjct: 48  TGENSSARELENTVVTPVRRQLLQVAGLREIKSETRDGAGVIRLEFDFGVNTDLAFIEVN 107

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ-------NNIDQVISHAIEQSMEIIRQ 169
             +    + L  +  +   +  +  +I ++             +      +E        
Sbjct: 108 EKIDAAMNSLPKEVTRPKAIKASATDIPVLYVNMTLKNDGAYRETDEQQFLELCELAENV 167

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
              +I           +      L    D  +L     +   +       N      +  
Sbjct: 168 VKRRIEQLPEVAMADITGVPGRLLQIVPDKDKLAMTGISVEDIENTLSANNVEPGSMLVR 227

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
             +   +     L+    ++  I++                       G R         
Sbjct: 228 DGYYEYNIRIATLLRTPEDVRNIYI---------------------RKGERIMQLKEFCK 266

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +       +   V             ++  +    ++          A   P     V  
Sbjct: 267 VDVVSQKEMGRSVAGGKRAVTLAIIKQSDEN-MDAMKAKLKETTDYFASLYPDIEFSVSR 325

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   + S  +   ++    + IV  + +   +  L+   S+  ++++T        
Sbjct: 326 NQTELLDYTISNLQQNLSLGFLFIFIVAVLFLGDVRSPLIIGISMVTSIVITFFFFYFCH 385

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            +L + S++G++L +G+ +DS I+V E I +   +  S+  S  +G +   + +  S++T
Sbjct: 386 VSLNVISLSGLILAVGMMIDSAIIVTENISQYRERGYSLKRSCAVGTTEMITPMLSSSLT 445

Query: 470 ALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +   V L F     G      A ++ + ++IS  T I ++  + +   +        ++
Sbjct: 446 TIAVFVPLIFMSGIAGAIFMDQAFSITVGLMISYITGIMLLPVLYLLFYKAGIRSKGFLS 505

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L  + +   + +   W      L    ++  L      + +  K  +       
Sbjct: 506 RRFDNLLKNEWLESFYDKGIDWVFSHKKLCVAGTLATLPLCVFLFYVMEKERMPQIDQNE 565

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +    +         +       +        Y            E+   +     
Sbjct: 566 LVARIEWNENIHVDENNRRVDDLMKQVDDRVTEHTAYVGMQDYILNGGSELSSTEAELYF 625

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              +      +   + +E+  K  + V+
Sbjct: 626 KTESPSGIFSLQELLGKEIREKYPLAVV 653



 Score = 97.5 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S + M   +  +F+ +   L  +  + +D    L    +FG   NL +   ++   G
Sbjct: 865  LFVSLLLMYFILCAQFESFLQPLIVLMEIPIDTAFALLALWVFGHTLNLMSAIGIIVTCG 924

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VND ++  D + +   L    +   + I  +    L   + TS+    +++P+     
Sbjct: 925  IVVNDSILKMDAINE---LRKAGMPLVEAIHTAGRRRLRAIIMTSLTTIFAMVPLLFTSD 981

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G  +    +I M   +VV    S+FI   I  FIY    KN
Sbjct: 982  MGSEMQKPLSIAMIGSMVVGTLVSLFIIPLIYWFIYRKHDKN 1023



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/286 (8%), Positives = 86/286 (30%), Gaps = 7/286 (2%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V    +                    +    + +     +        ++ +   ++   
Sbjct: 219 VEPGSMLVRDGYYEYNIRIATLLRTPEDVRNIYIRKGERIMQLKEFCKVDVVSQKEMGRS 278

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G++   + +  Q  +++   +            +      +      ++    I   
Sbjct: 279 VAGGKRAVTLAIIKQSDENMDAMKAKLKETTDYFASLYPDIEFSVSRNQTELLDYTISNL 338

Query: 670 IVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +  + + I  +         L    +++  I  T  FF    +  N+ +++ ++ 
Sbjct: 339 QQNLSLGFLFIFIVAVLFLGDVRSPLIIGISMVTSIVITFFFFYFCHVSLNVISLSGLIL 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  ++  ++V + +    +      S +        E +   + +S+      +P+  
Sbjct: 399 AVGMMIDSAIIVTENI---SQYRERGYSLKRSCAVGTTEMITPMLSSSLTTIAVFVPLIF 455

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G     F   A  +  G++++  + I +   + L  Y    ++ 
Sbjct: 456 MSGIAGAIFMDQAFSITVGLMISYITGIMLLPVLYLLFYKAGIRSK 501


>gi|254228965|ref|ZP_04922387.1| cation efflux system protein [Vibrio sp. Ex25]
 gi|262396690|ref|YP_003288543.1| cation efflux system protein cusA [Vibrio sp. Ex25]
 gi|151938642|gb|EDN57478.1| cation efflux system protein [Vibrio sp. Ex25]
 gi|262340284|gb|ACY54078.1| cobalt-zinc-cadmium resistance protein czcA [Vibrio sp. Ex25]
          Length = 1046

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 73/676 (10%), Positives = 180/676 (26%), Gaps = 41/676 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N ++V++ ++   +  L ++ N    + +D  P       I                  
Sbjct: 11  KNRFMVLIATLALVLTGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL    K  L    T                     +           ++   +   +
Sbjct: 118 APKLPPSAKPTLGPDATGVGWVYSYV-LQDKTGNHDLADLRSMQDWFLKYELQTVDGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYNLTLQQVNMAIQNGNQETGASVVEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +   E G         D    P        +
Sbjct: 237 LTSIEDIE------------------SLPLKVTEKGTPLLLGDIADINLGPQMRRGISEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I         L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVISKVKDKLEDLQRSLPDGVEIVPTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHSQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIERTPLTDKNRWQVIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR   +             + 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGNVLPEHKNPVNRGLIALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    ++     + I++     +       G  +      G  + +    P     + 
Sbjct: 519 RPLLNTSLKYPKSMIVIALGLMASAYYPTSQLGSEFIPPLDEGDLMYMPTTYPGIS--IG 576

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              E +Q  +   +     K    ++      +      +     ++           TE
Sbjct: 577 KARELVQQTNKLIKTVPEVKTVWGKIGRAETATDPAPLTMIETVIQLKPHDQWREGVTTE 636

Query: 656 IVGPKISRELIRKGIV 671
            +  +    +   G+ 
Sbjct: 637 SLRKEFDELIQFPGLT 652



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 79/289 (27%), Gaps = 20/289 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V ++ +   S        +  +                   +    L    +V + I
Sbjct: 816  WVFVDIEGRDLGSYVVEAQQVVADQLELPAGYSLAWSGQYEYMERAKDRL--SVVVPITI 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYS 733
            + I ML+Y   R         I  L L +    G          F++      + L G +
Sbjct: 874  AIIMMLLYFSFR---RVGEVLIIMLTLPLAMVGGLWLMHYLNYNFSIAVGVGFIALAGVA 930

Query: 734  VNDKVVVY--------DRMR--KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++          R    +  +    +    D I +     +   + T +   I +
Sbjct: 931  VEIGVIMLVYLNQAWHHRKLDAEEKQRPLQARDLTDAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +P+      G  V+   A PM  G+  A   ++ +   I         K
Sbjct: 991  IPIMYGEGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKQREVK 1039



 Score = 45.8 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 66/208 (31%), Gaps = 10/208 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++   + +   +P         
Sbjct: 266 NLGPQMRRGISELNGEGEAVGGVIVMRFGENASEVISKVKDKLEDLQRSLPDGVEIVPTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLINAAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIVMHSQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I K+  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGKAAEEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              ++ +   +S +P+    G     F+
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS 469


>gi|91793547|ref|YP_563198.1| acriflavin resistance protein [Shewanella denitrificans OS217]
 gi|91715549|gb|ABE55475.1| acriflavin resistance protein [Shewanella denitrificans OS217]
          Length = 1030

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 80/686 (11%), Positives = 210/686 (30%), Gaps = 51/686 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  I   GL  +         L+ FP       +           +     
Sbjct: 9   KRPVTTSMFFLAILLFGLASS-----RMLPLEMFPGIDIPQIM---------VQVPYPGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + +        S  Q   +I L+          + +    +  
Sbjct: 55  SPAEVERDITRPLEEALATMSGIDEVHSSSSQDGAEIQLNMKWEEDVATKSLEAREKIDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++ L+   +  ++ ++  + + ++ +S+A +   + +R+    +   +   
Sbjct: 115 VRHLLPKDVERVLIQQFSTADMPVLTIRISSERELSNAFDLLDKQLRK---PLERVDGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         Q+    D  +L      T  ++      N                   + 
Sbjct: 172 KVTLYGVDKKQIEVRLDALKLSAANVDTLTLTRRLQNENFVISAGTLRANTHVYQVSPKG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +I  + +       D       +    +     + + V  D   +  A ++D  
Sbjct: 232 EFKSLEDIKSLVIKPGLTLGDVAQINFSLPEQVEGRLLDQKYAVGLDVFKESGANLVDVS 291

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                VI+      +      F +E                               S S 
Sbjct: 292 DRVLKVIDIVKQDKQFNGIKLFIME-----------------------NQAFGVKSSLSD 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  I A L   VL++ +   K  LV   S+ +++ +TLA++ LLG +L + S+ G++
Sbjct: 329 LLISGLIGALLSFGVLYLFLRNLKMTLVVVSSVPISICMTLAVMYLLGYSLNILSMMGLL 388

Query: 422 LGIGLAVDSNILVNERIREENR----------KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L +G+ +D+ ++V E + +E +          + ++   ++  G  +    +    +T  
Sbjct: 389 LAVGMLIDNAVVVTESVLQEKQASNIDDNDSCQIKANERAVLTGVEKVALAVMAGTMTTA 448

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           I  +   F     +  F   + ++I IS+  ++ + + ++  ++      +      S+ 
Sbjct: 449 IVFLPNIFGVKIEITIFLEHVAIAICISLAASLLVSKTLIPLLLTKLHFDTPKQTKESQI 508

Query: 532 FLIPDCI-AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            L             +       ++    ++ L F        +    + +        +
Sbjct: 509 QLGYQRSLNWTLNHPKISAAIALVILVSTALPLTFIKQDQSDGEGNDRLYINYQIEGRHN 568

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L V  + ++ ++    + +     ++       Q   S    +    +     +      
Sbjct: 569 LKVTEATVKQMEDYLYANKEKFFIESVYSYYSPQDSQSTLILKKDIPIPMSELKKSIREG 628

Query: 651 IQNTEIVGPKISRELIRKGIVGVIIS 676
                I  P+      ++GI   +  
Sbjct: 629 FPKFSIAKPQFGWGGEQRGIRVTLTG 654



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 10/222 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                        + +      E + + +  I        +   G +   E     +V +I
Sbjct: 785  NRQTALSIGANAEELTTEEAQEKITQVMDSINFPYGYGYSLRGGFERQDEEQSVMLVNMI 844

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++   + I +   F+        IT+++  IT       L G    + ++  +L L+G  
Sbjct: 845  LAIAMIYIVMAALFESLLLPTAIITSILFSITGVFWALLLTGTPMGIMSMIGILILMGIV 904

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV----- 788
            VN+ +V+ D++ +            D I +     L   + T     + ++P+A+     
Sbjct: 905  VNNGIVLVDQINQMTPALD---ELSDTIGRVCVTRLRPVLMTVGTTVLGLVPLALGDTQI 961

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              GG      AI +  G+  + ++S+F+       +Y  R K
Sbjct: 962  GGGGPPYSPMAIAIIGGLTFSTATSLFLVPLCYQALYRMRYK 1003



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 80/202 (39%), Gaps = 11/202 (5%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           +V+++VK+          I   +  G  +   L    I G+I + ++  +          
Sbjct: 296 KVIDIVKQDKQFNGIKLFIMENQAFG--VKSSLSDLLISGLIGALLSFGVLYLFLRNLKM 353

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  ++++ + I  TL    L G   N+ ++  +L  +G  +++ VVV + + +  +   
Sbjct: 354 TLVVVSSVPISICMTLAVMYLLGYSLNILSMMGLLLAVGMLIDNAVVVTESVLQEKQASN 413

Query: 753 TSIS-------FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-IGSFAIPMAFG 804
              +           +   + +     +  +M   I  LP  ++G  + I  F   +A  
Sbjct: 414 IDDNDSCQIKANERAVLTGVEKVALAVMAGTMTTAIVFLP-NIFGVKIEITIFLEHVAIA 472

Query: 805 IVVAASSSIFIAAPILLFIYDW 826
           I ++ ++S+ ++  ++  +   
Sbjct: 473 ICISLAASLLVSKTLIPLLLTK 494


>gi|194432615|ref|ZP_03064901.1| cation efflux system protein cusA [Shigella dysenteriae 1012]
 gi|194419176|gb|EDX35259.1| cation efflux system protein cusA [Shigella dysenteriae 1012]
 gi|332085730|gb|EGI90894.1| cation efflux system protein cusA [Shigella dysenteriae 155-74]
          Length = 1047

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIIMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRLGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|262371238|ref|ZP_06064558.1| cation efflux system protein [Acinetobacter johnsonii SH046]
 gi|262313845|gb|EEY94892.1| cation efflux system protein [Acinetobacter johnsonii SH046]
          Length = 1046

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/602 (9%), Positives = 150/602 (24%), Gaps = 59/602 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  W+++       +G+         +  +D  P                   +  +  
Sbjct: 23  QNAIWVLLFVCTWIAVGVYS-----YQKLPIDAVPDITNTQ-----------VQINTQAK 66

Query: 62  EDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +   + +    +     R   +++T+ F D         ++   +
Sbjct: 67  GFTALEVEQRITYPIENAMAGIPDLELTRSISRYGLSQVTIVFKDGTDIYWARQQINQRI 126

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQ 173
           Q   S+L       +   +T                          ++           Q
Sbjct: 127 QEAQSELPAQIAPTMSPVSTGLGEIYQWVLKADPNAKKPDGTAYTPMDLREIQDWIVRPQ 186

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   +               D +R++QL  +  ++       N ++          
Sbjct: 187 LQRVKGVAEVNSIGGFEKTYVVSPDLNRMQQLNISLEQLQQALAQNNENRGAGYIEDNGQ 246

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           + +           +I    L                                   +   
Sbjct: 247 QLTVRVPGAFNGLSDIENTMLGSP--------------------NGSPIRVGDIAQVSIG 286

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +   G           +       +     +        ++       +         
Sbjct: 287 HDLRTGGATYNGKETVLGVAMMAMGGNSRTVSKAVDAKLQDIQNSLPKGVVIEPVYDRTT 346

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +    +      A LV+I+LF+ +   +  L+    I L+++ TL  ++    +  
Sbjct: 347 LVEKAIKTVQKNLVEGAILVIIILFLFLGNIRAALITACVIPLSMLFTLTGMAQKNISAN 406

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTI 463
           L S+  +  GI   VD  +++ E                      F  + +   +A   +
Sbjct: 407 LMSLGALDFGII--VDGAVVIVENCIRRLAHTQQLLKRPLTQSERFKEVFLAARQARRPL 464

Query: 464 FDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               +  L+  + +F   G         A+T+ L+++ ++  +I+ V A +   ++    
Sbjct: 465 IFGQLIILVVYLPIFALSGVEAKMFHPMALTVVLALVAAIILSITFVPAAVALWVKGDIQ 524

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +      L         + I +            L  I                 +G   
Sbjct: 525 EKESRWMLWLKAKYQQTLDISYQYKAVVLTFALCLLVITGFISTKLGSEFAPQLSEGDFA 584

Query: 581 LG 582
           + 
Sbjct: 585 IQ 586



 Score = 46.2 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 82/276 (29%), Gaps = 20/276 (7%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE-KNFLVRLQYQPGDSVAQTR 633
           F G   +        + S +R    +        +            L          +R
Sbjct: 256 FNGLSDIENTMLGSPNGSPIRVGDIAQVSIGHDLRTGGATYNGKETVLGVAMMAMGGNSR 315

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-----ISAIAMLIYIWIRF 688
            +        + +  S  +   I        L+ K I  V       + + ++I      
Sbjct: 316 TVSKAVDAKLQDIQNSLPKGVVIEPVYDRTTLVEKAIKTVQKNLVEGAILVIIILFLFLG 375

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MR-- 745
               AL     + L +  TL   A   I  NL ++ A+    G  V+  VV+ +  +R  
Sbjct: 376 NIRAALITACVIPLSMLFTLTGMAQKNISANLMSLGAL--DFGIIVDGAVVIVENCIRRL 433

Query: 746 ----KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFA 798
               + +K   T       +  +  +     ++  +   +  LP+    G    +    A
Sbjct: 434 AHTQQLLKRPLTQSERFKEVFLAARQARRPLIFGQLIILVVYLPIFALSGVEAKMFHPMA 493

Query: 799 IPMAFGIVVAASSSIFIAAPILLFI--YDWRAKNAR 832
           + +   +V A   SI      +      D + K +R
Sbjct: 494 LTVVLALVAAIILSITFVPAAVALWVKGDIQEKESR 529



 Score = 42.4 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 74/230 (32%), Gaps = 35/230 (15%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++  +   +   Q         V +          + V ++  +     +P        
Sbjct: 814  SDVAQVSTIEGINQVSRENGKRRVVVTTNVEGRDLGSFVSDVQTQLKAYTLPSGYWI--- 870

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI----TKTLGF- 710
              G +       K  + ++I    + I+I +             +  ++        G  
Sbjct: 871  EYGGQFENLASAKARMQIVIPLALITIFILL-----------MAVFHNVKESLLVFTGIP 919

Query: 711  FALFG---------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            FAL G         I  +++A    + L G +V + +V+   +++    Y         +
Sbjct: 920  FALTGGVLFLWLRDIPLSMSAGIGFIALSGVAVLNGLVMLTFIKELRDKY----PVHKAV 975

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
             +     L   + T+  A +  +PMA+    G  V    A  +  GI+ +
Sbjct: 976  WQGAILRLRPVLMTACVASLGFVPMALATGTGAEVQRPLATVVIGGIISS 1025


>gi|281411510|ref|YP_003345589.1| protein-export membrane protein SecD [Thermotoga naphthophila
           RKU-10]
 gi|281372613|gb|ADA66175.1| protein-export membrane protein SecD [Thermotoga naphthophila
           RKU-10]
          Length = 465

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 36/177 (20%), Positives = 80/177 (45%), Gaps = 4/177 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           ++  V P + R++I   +   II  I +L+Y+ I ++    + A   LI +    LG  A
Sbjct: 281 SSGWVAPLLGRDVIDASLKAGIIGLILVLVYMIIYYR-AMGIVADLALIYNTVLLLGVMA 339

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                  L  +A ++  IG +V+  V++Y+R+++ M+L       +  I    + +L   
Sbjct: 340 AGKFILTLPGIAGIILTIGTTVDGNVIIYERIKEEMRL---GKPVKTSIAAGFDRSLSTI 396

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +  ++   ++ L +  +G   I  FAI +  G++ +   ++     +L  +  +   
Sbjct: 397 LDANITTILTGLILYYFGTGTIKGFAITLIIGVLGSIFVNLVFIRLLLDALARFIKP 453



 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 116/489 (23%), Positives = 201/489 (41%), Gaps = 71/489 (14%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDDFVN---GFLQMYSDELRSFLKKEGIGVFSM----RQ 93
            + I LGLD++GG+ +   V+           +      LR+ L   G    ++    R 
Sbjct: 31  TSNIRLGLDIKGGARIEYMVEVLQETENPSDVVDDVWTVLRNRLDAAGYTEAAVNKVLRD 90

Query: 94  IQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID 153
            +  I +    +         +        ++                     +    + 
Sbjct: 91  NKYYIVVEIPGATDTVQAEKLIGSTGVLYFAQ---------------------VLDEYLG 129

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
           +  S   E S+E  R+    +   +                                K  
Sbjct: 130 EDPSKVPELSLEARRENAVWLKGRDGKWY--------------------------LVKKE 163

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
                    +   +   R   ++   +Y  +   E+S  +++                  
Sbjct: 164 IMGRKDLVLEAPRIVYARPEVETRTGRYGYKVSFELSKEYVDVFKRITQALYVP------ 217

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
                          +  K LA+VLD  V     +   I  GKA+I+GNF++E A  LAA
Sbjct: 218 -----------EGTYDPKKRLAIVLDDVVQFVGQVVAIITDGKAEITGNFSLEEAKQLAA 266

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
           +LR+G+LP +L       V   LG D I     A + GL+L++++MI+ Y   G+VAD +
Sbjct: 267 ILRSGALPARLVKTSSGWVAPLLGRDVIDASLKAGIIGLILVLVYMIIYYRAMGIVADLA 326

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           +  N +L L +++     LTLP IAGI+L IG  VD N+++ ERI+EE R  + V  S+ 
Sbjct: 327 LIYNTVLLLGVMAAGKFILTLPGIAGIILTIGTTVDGNVIIYERIKEEMRLGKPVKTSIA 386

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            GF R+ STI D+NIT ++  ++L++FG G ++GFAIT+ + +L S+F  +  +R ++  
Sbjct: 387 AGFDRSLSTILDANITTILTGLILYYFGTGTIKGFAITLIIGVLGSIFVNLVFIRLLLDA 446

Query: 514 IIRYKKMKS 522
           + R+ K   
Sbjct: 447 LARFIKPLR 455


>gi|53802501|ref|YP_112715.1| AcrB/AcrD/AcrF family protein [Methylococcus capsulatus str. Bath]
 gi|53756262|gb|AAU90553.1| AcrB/AcrD/AcrF family protein [Methylococcus capsulatus str. Bath]
          Length = 1056

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 57/519 (10%), Positives = 142/519 (27%), Gaps = 44/519 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L  +I   G+L  L                P  +I +         +V   
Sbjct: 9   LRRPYTFVVLSILIVLFGILSVLKTAT---------DVFPPIKIPV-------VSVVW-- 50

Query: 61  DEDDFVNGFLQMYSD-----ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                +   +           L S ++       +     + I +             ++
Sbjct: 51  SYAGLLPQDVSGRITYYYERALTSTVEGIARIESNSYYGISIINIYLQPDTNLAGAEAEI 110

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
           T   Q V  +L  D    L++      + + + Q   D +     E       +    + 
Sbjct: 111 TAISQTVVKQLPPDISPPLIMRLEASSVPVAMLQVTSDTLSPS--ELYNLAYARIRTLLV 168

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                I          QL    D  +L     T   +       +         ++    
Sbjct: 169 TIPGAILPQPYGGKPQQLLVSLDKQKLLAHNITATDVHNAFGDQSIVLPAGDMKIKQTDW 228

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                       + + I +    A                       +     ++     
Sbjct: 229 MVQTNATPMQIEDFNNIPIKRVDATN------------------STIYLRDVADVQIAGP 270

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
             ++  ++        +       S    ++    +   +           +        
Sbjct: 271 PQINAVLVEGKQAVMIVVMKSGNASTLDVVDGIKKMIPRIEQIVPEGVKIKLLNDASIFV 330

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S           A L  +V+ + +   +  ++   SI L ++ +L  L LLG ++ + 
Sbjct: 331 KDSIKDVLHEMGTAALLTGLVVLLFLGSWRPTVIIATSIPLAILTSLICLHLLGESINIM 390

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   ++ E I       + +  ++    ++       + +  +    
Sbjct: 391 TLGGLALAVGILVDDATVMIENIDTHLEMGKPLETAIIDAANQIVVPTLVATLCIVTVWF 450

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            LF   G +   FA     +++ +M  +  + R ++  +
Sbjct: 451 PLFELSGVSGYLFAPM-AEAVIFAMLASFILSRTLVPTM 488



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 90/283 (31%), Gaps = 9/283 (3%)

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
            + +                    +  +    + +      + ++   ++  +QI     
Sbjct: 213 SIVLPAGDMKIKQTDWMVQTNATPMQIEDFNNIPIKRVDATNSTIYLRDVADVQIAGPPQ 272

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
            N    +     +        A T  +    KK+   +     +  +I     +   ++ 
Sbjct: 273 INAVLVEGKQAVMIVVMKSGNASTLDVVDGIKKMIPRIEQIVPEGVKIKLLNDASIFVKD 332

Query: 669 GIVGVI-----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
            I  V+      + +  L+ +     W   +   T++ L I  +L    L G   N+  +
Sbjct: 333 SIKDVLHEMGTAALLTGLVVLLFLGSWRPTVIIATSIPLAILTSLICLHLLGESINIMTL 392

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             +   +G  V+D  V+ + +                I  + N+ +  ++  ++      
Sbjct: 393 GGLALAVGILVDDATVMIENI---DTHLEMGKPLETAIIDAANQIVVPTLVATLCIVTVW 449

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            P+    G     FA PMA  ++ A  +S  ++  ++  +  +
Sbjct: 450 FPLFELSGVSGYLFA-PMAEAVIFAMLASFILSRTLVPTMAKY 491



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/164 (13%), Positives = 63/164 (38%), Gaps = 5/164 (3%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            + G++ + + + + + I F  W      IT L   +        +     ++ A+   + 
Sbjct: 894  LAGLVAAIVLVYLLLVINFQSWLDPFIIITALPGALAGIAWSLFITHTNISVPALTGAIM 953

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G +  + ++V    R+  +      + +  ++      +   + T+ A  I +LPM++
Sbjct: 954  SMGTATANSILVVSYARE--RFEVHGDALKAAVEAGYAR-IRPVLMTASAMIIGMLPMSL 1010

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                        +  G+++A  +++     +   IY  R  + +
Sbjct: 1011 SNSQN-APLGRAVMGGLMLATFATLLFVPCVYAMIYSKRTASRK 1053


>gi|16128558|ref|NP_415107.1| copper/silver efflux system, membrane component [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89107440|ref|AP_001220.1| copper/silver efflux system, membrane component [Escherichia coli
           str. K-12 substr. W3110]
 gi|157160067|ref|YP_001457385.1| cation efflux system protein cusA [Escherichia coli HS]
 gi|170021068|ref|YP_001726022.1| CzcA family heavy metal efflux protein [Escherichia coli ATCC 8739]
 gi|170080154|ref|YP_001729474.1| copper/silver efflux system, membrane component [Escherichia coli
           str. K-12 substr. DH10B]
 gi|170080255|ref|YP_001729575.1| copper/silver efflux system, membrane component [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188492611|ref|ZP_02999881.1| cation efflux system protein cusA [Escherichia coli 53638]
 gi|193063431|ref|ZP_03044521.1| cation efflux system protein cusA [Escherichia coli E22]
 gi|194437445|ref|ZP_03069542.1| cation efflux system protein cusA [Escherichia coli 101-1]
 gi|218553116|ref|YP_002386029.1| copper/silver efflux system, membrane component [Escherichia coli
           IAI1]
 gi|238899852|ref|YP_002925648.1| copper/silver efflux system, membrane component [Escherichia coli
           BW2952]
 gi|260842800|ref|YP_003220578.1| copper/silver efflux system protein CusA [Escherichia coli O103:H2
           str. 12009]
 gi|293418686|ref|ZP_06661121.1| cation efflux system protein cusA [Escherichia coli B088]
 gi|300907738|ref|ZP_07125358.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 84-1]
 gi|300949246|ref|ZP_07163278.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 116-1]
 gi|300954368|ref|ZP_07166825.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 175-1]
 gi|301027585|ref|ZP_07190915.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 196-1]
 gi|301302045|ref|ZP_07208178.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 124-1]
 gi|312970648|ref|ZP_07784829.1| cation efflux system protein cusA [Escherichia coli 1827-70]
 gi|2506614|sp|P38054|CUSA_ECOLI RecName: Full=Cation efflux system protein CusA
 gi|1778490|gb|AAB40773.1| HelA homolog [Escherichia coli]
 gi|1786788|gb|AAC73676.1| copper/silver efflux system, membrane component [Escherichia coli
           str. K-12 substr. MG1655]
 gi|4062205|dbj|BAA35215.1| copper/silver efflux system, membrane component [Escherichia coli
           str. K12 substr. W3110]
 gi|157065747|gb|ABV05002.1| cation efflux system protein cusA [Escherichia coli HS]
 gi|169755996|gb|ACA78695.1| heavy metal efflux pump, CzcA family [Escherichia coli ATCC 8739]
 gi|169887989|gb|ACB01696.1| copper/silver efflux system, membrane component [Escherichia coli
           str. K-12 substr. DH10B]
 gi|169888090|gb|ACB01797.1| copper/silver efflux system, membrane component [Escherichia coli
           str. K-12 substr. DH10B]
 gi|188487810|gb|EDU62913.1| cation efflux system protein cusA [Escherichia coli 53638]
 gi|192931015|gb|EDV83619.1| cation efflux system protein cusA [Escherichia coli E22]
 gi|194423614|gb|EDX39604.1| cation efflux system protein cusA [Escherichia coli 101-1]
 gi|218359884|emb|CAQ97427.1| copper/silver efflux system, membrane component [Escherichia coli
           IAI1]
 gi|238860609|gb|ACR62607.1| copper/silver efflux system, membrane component [Escherichia coli
           BW2952]
 gi|257757947|dbj|BAI29444.1| copper/silver efflux system protein CusA [Escherichia coli O103:H2
           str. 12009]
 gi|260450260|gb|ACX40682.1| heavy metal efflux pump, CzcA family [Escherichia coli DH1]
 gi|291325214|gb|EFE64629.1| cation efflux system protein cusA [Escherichia coli B088]
 gi|299879290|gb|EFI87501.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 196-1]
 gi|300318667|gb|EFJ68451.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 175-1]
 gi|300400556|gb|EFJ84094.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 84-1]
 gi|300451327|gb|EFK14947.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 116-1]
 gi|300842597|gb|EFK70357.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 124-1]
 gi|310337297|gb|EFQ02435.1| cation efflux system protein cusA [Escherichia coli 1827-70]
 gi|315135240|dbj|BAJ42399.1| copper/silver efflux system, membrane component [Escherichia coli
           DH1]
 gi|315255131|gb|EFU35099.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 85-1]
 gi|323184941|gb|EFZ70309.1| cation efflux system protein cusA [Escherichia coli 1357]
 gi|323943109|gb|EGB39267.1| CzcA family protein heavy metal efflux pump protein [Escherichia
           coli E482]
 gi|323963252|gb|EGB58818.1| CzcA family protein heavy metal efflux pump protein [Escherichia
           coli H489]
          Length = 1047

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|307568145|pdb|3K07|A Chain A, Crystal Structure Of Cusa
 gi|307568205|pdb|3KSO|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
           Cusa
 gi|307568206|pdb|3KSS|A Chain A, Structure And Mechanism Of The Heavy Metal Transporter
           Cusa
 gi|308387794|pdb|3K0I|A Chain A, Crystal Structure Of Cu(I)cusa
          Length = 1055

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 15  RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 65  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 125 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 183

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 184 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 243

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 244 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 286 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 346 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 405

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 406 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 465

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 466 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 525

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 526 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 584



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 771  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 830

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 831  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 888

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 889  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 947

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 948  FGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 1007

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1008 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1055


>gi|260778101|ref|ZP_05886994.1| AcrB/AcrD/AcrF family protein [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606114|gb|EEX32399.1| AcrB/AcrD/AcrF family protein [Vibrio coralliilyticus ATCC BAA-450]
          Length = 1029

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 68/580 (11%), Positives = 160/580 (27%), Gaps = 44/580 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N     +L   I   G++        Q  ++ FP   P + +          ++      
Sbjct: 11  NPVGANLLMLAIIASGVMA-----FGQLRVESFPQIAPSSVV---------INVAYPGGT 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              ++  +    +E  S +              + + +    S     + D V   +  +
Sbjct: 57  AKQIDESVTQRIEESISGISGIKQVTSQSSAGMSSVVVRKTSSADLNKLLDDVRNRVNAI 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N       +K  +V      ++  +  +          EQ   I RQ    +  +    +
Sbjct: 117 NG-FPAQAEKPQVVRNEFTNLAAFVVVSGPRSD-----EQLQPIARQVEQALKSNPKISK 170

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    QL  E DP++L++L  +   ++               G   L    G    
Sbjct: 171 VSNWGSRKPQLIIEPDPAQLKKLGLSLEDLASTI------------GQMSLESRTGELIS 218

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            + ++ I G               + +  ++     +   +      + +          
Sbjct: 219 DKGRMVIRGD--------GYADDVQKLRRLAIVSRPSGTVYLGDIAKLSRGYERSGSIVR 270

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    + S     +     +      A  R                          
Sbjct: 271 NNGINAIALLISTSQTDNLLKVSDAIKDTLAEQRKILPSDIELNTMADMAPYIEEQLFRL 330

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V+++L + +       VA   I + +  TL  + L   ++   ++ G +L
Sbjct: 331 GDNAWQGLLIVVVLLGIFLELKLAFWVAVG-IPVAIAGTLGAMQLANYSINDITLFGFIL 389

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD  ++V E I E+  K+ S   +   G            +T + A   + +   
Sbjct: 390 VLGILVDDAVVVGEAIHEQRGKHASGRKAAWHGVHSVTVATVFGVLTTIAAFSPMLWINN 449

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMI--FIIRYKKMKSIDINPLSRFFLIPDCIAI 540
              +  A      ++ ++  ++   + ++           KS  I    +          
Sbjct: 450 DFAKILA-GFSAVVIFALIFSLIESKFILPSHLAQLSVSKKSNGIFSRIQSVAQGGLEWF 508

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
            F   +     +        +  +    L YG+   G I+
Sbjct: 509 NFRVYKPTLEKVLDYKLASLLGFVAAIVLAYGMWSTGTIR 548



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/207 (16%), Positives = 78/207 (37%), Gaps = 10/207 (4%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    L   +K +   + L+T+ +      +    L      G++I  + + I++ ++
Sbjct: 293 SDAIKDTLAEQRKILPSDIELNTMADMAPYIEEQLFRLGDNAWQGLLIVVVLLGIFLELK 352

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             ++ A+G        I  TLG   L     N   +   + ++G  V+D VVV + + + 
Sbjct: 353 LAFWVAVGIPVA----IAGTLGAMQLANYSINDITLFGFILVLGILVDDAVVVGEAIHEQ 408

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFG 804
              + +    R      ++     +V+  +    +  PM         ++  F+  + F 
Sbjct: 409 RGKHASG---RKAAWHGVHSVTVATVFGVLTTIAAFSPMLWINNDFAKILAGFSAVVIFA 465

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++ +   S FI    L  +   +  N 
Sbjct: 466 LIFSLIESKFILPSHLAQLSVSKKSNG 492



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 20/138 (14%), Positives = 50/138 (36%), Gaps = 8/138 (5%)

Query: 697  ITTLILDITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            I   ++        F   L  +  +L ++  ++ + G  +ND +V+  R       Y + 
Sbjct: 884  IIMAVIPFGFAGAIFGHYLMDLPISLLSMFGMMAMTGIVINDSLVLITRFN---AEYRSG 940

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMAFGIVVAASS 811
            +  +  +  +    L     T++     +LP+          +   A+ + FG + A + 
Sbjct: 941  VPLKQALVTAGTSRLRAIFLTTITTVCGLLPLLSETAEQAQYLKPAAVSLVFGELFATAV 1000

Query: 812  SIFIAAPILLFIYDWRAK 829
            ++ +   +L        K
Sbjct: 1001 TLLLIPILLGMTSRKAPK 1018


>gi|187920633|ref|YP_001889665.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
 gi|187719071|gb|ACD20294.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
          Length = 1017

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 65/662 (9%), Positives = 176/662 (26%), Gaps = 42/662 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I  +GL       L    + ++P                         
Sbjct: 9   RRPVLASVVSLLILVLGL-----RSLAALKVSQYPQTENAVVT---------ITTAYYGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D + GF+    +   +  +       +     + I  +   +        ++   +  
Sbjct: 55  NADTIAGFITQPLEAAIAQAQGIDYMSSTSSTGVSTIIATLRLNYDANRALTEINTQIGS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++ +L   T +    +      D + S+ +  +  ++R    ++   E   
Sbjct: 115 VRNQLPPQAQQPVLTVQTGQTTDAMYMGFYSDVLPSNNV--TDYLLRVVKPKLDSIEGVQ 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    D +RL     T A +                G      + G   
Sbjct: 173 IAEILGGRQFALRAWLDATRLAAHGVTAADVFTAL------------GNNNYLATLGTTK 220

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V+++         +F          +   +            N+           
Sbjct: 221 GQMVSVDLNAGTDLHTVDDFKQ--------LVIKQKNGAIVRLEDVANVVLGADSYDFNV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +               +     +    +   L+          +          +   
Sbjct: 273 AFSGKRSVFIGIKVAPDANILDVAKRVKAIFPGLQKQFPTGMTGEIVYDATDFVNTAIVE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V  V+F+ +   +  +V   ++ L++I T  ++ LLG ++ L ++  +V
Sbjct: 333 VIKTLVEALLIVTAVIFLFLGSFRAVVVPLIAMPLSLIGTFFVMQLLGYSINLLTLLALV 392

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           L IGL VD  I+V E +      + ++ F +  +        I    +  +     + F 
Sbjct: 393 LAIGLVVDDAIIVVENVDRHMKEEGKAPFDAALIAARELGGPILAMTVVLIAVYAPIGFQ 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSRFFLIPD 536
           G   G     FA ++  ++ +S   A+++   M   F    ++          +F  +  
Sbjct: 453 GGLTGALFTEFAFSLAGAVTVSGVIALTLSPMMCSRFFRAEQESGRFARFVDRQFERVHR 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                            ++ ++     ++        +  +    + +   +    + ++
Sbjct: 513 GYGRLLHATLDTWPVFIVMGALLLAGTIYLFMTSKSELAPEEDQGIVLSQIQGPPNATIQ 572

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                        +                 +      + +   ++      L      +
Sbjct: 573 QMQTYADQVFNISKALPEYSQMFQLTGAPTLNQGIGGVLFKTWDQRSKGAGALQQELQQK 632

Query: 656 IV 657
             
Sbjct: 633 WN 634



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 81/233 (34%), Gaps = 6/233 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V + +      D +         F+        + +   + ++ +   + +  P 
Sbjct: 253 VRLEDVANVVLGADSYDFNVAFSGKRSVFIGIKVAPDANILDVAKRVKAIFPGLQKQFPT 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
                            I + I  ++ + + +   I++    +   +  +  + L +  T
Sbjct: 313 GMTGEIVYDATDFVNTAIVEVIKTLVEALLIVTAVIFLFLGSFRAVVVPLIAMPLSLIGT 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   NL  + A++  IG  V+D ++V + +  +  +     +  D    +  E
Sbjct: 373 FFVMQLLGYSINLLTLLALVLAIGLVVDDAIIVVENV--DRHMKEEGKAPFDAALIAARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G  +  ++       P+   G   G++   FA  +A  + V+   ++ ++ 
Sbjct: 431 LGGPILAMTVVLIAVYAPIGFQGGLTGALFTEFAFSLAGAVTVSGVIALTLSP 483



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/280 (9%), Positives = 85/280 (30%), Gaps = 12/280 (4%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
            +    SI      +                   L       +  S +     ++    I+
Sbjct: 732  YVNYFSIAGRSYKVIPQVLQTDRLNPSQVLDYYLRTPDGSVIPASTIAHLEHNVVPESIN 791

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                         +            + +   +             +     +    +I 
Sbjct: 792  HFQQLNSATISGVIVPGVSQGEVLDFLRKATAQAAPAGYSADYSGQSRQFVQESGGFVIT 851

Query: 668  KGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                 ++ + I + + +  +F+ +   +  + ++ + +   L F  +     N+     +
Sbjct: 852  -----LLFATIIVFLALAAQFESFRDPIVILVSVPMALFGALIFINIGLTTLNIYTQVGL 906

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +TL+G      +++     +         S R+ ++++    L   + T+ A  + VLP+
Sbjct: 907  VTLMGLVSKHGILIVQFANELQHA---GRSKREALEEAAGVRLRPILMTTAAMALGVLPL 963

Query: 787  AVWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFI 823
             V  G+         + +  G+ +    ++F+   + +F+
Sbjct: 964  VVASGAGAAGRNAMGLVIFTGLSIGTLFTLFVVPAMYMFL 1003


>gi|296156105|ref|ZP_06838944.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
 gi|295893611|gb|EFG73390.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
          Length = 1081

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/524 (12%), Positives = 148/524 (28%), Gaps = 44/524 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G L  L     ++  D FP+                  +V   
Sbjct: 8   LRRPYTFVVLAVLIFIAGPLAIL-----RTPTDIFPNINIPV-----------VSIVWTY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 +  N     Y   L S +              + + + F           +   
Sbjct: 52  NGFSAQEMANRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + + +     +       Q   Q+   
Sbjct: 112 NSASILRVLPPGTLPPNIITYNASTVPILQLGLSSNTLSEQ--QLYDLGNSQIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + DP  L+        +       N    G    +     + 
Sbjct: 170 QGASVPLPFGGKVRQIMVDIDPRALQAKGLAPLDVVNAVNAQNLILPGGTAKIGTKEYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     D+    +     +     ++    A  
Sbjct: 230 QMNGSTDTVAAL--------------------NDLPIKTVAGGVVYVRDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    I+    +   + AG                   
Sbjct: 270 TNIVRSDGKRAALLTIEKSGSTSTLTIIQQVKSMLPHIAAGLPSALHITALSDQSVFVKS 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   SI L V+ +L  LS LG T+ + ++
Sbjct: 330 AVVGVAREALIAAALTAVMILLFLGSWRATLIIAVSIPLAVLTSLIALSALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I       + ++ ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLENGEPLYDAILNGSGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
           F   G         A  +  +++ S F + ++V  + ++++R +
Sbjct: 450 FLLSGVARYLFVPLAEAVVFAMIASYFFSRTLVPTLAMYLMRAR 493



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 8/234 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR                  +      L  +   S +   +++ VK  +  I        
Sbjct: 256 VRDVAHVRDGYAPQTNIVRSDGKRAALLTIEKSGSTSTLTIIQQVKSMLPHIAAGLPSAL 315

Query: 654 TEIVGPKISRELIRK----GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                   S  +           +I +A+  ++ +     W   L    ++ L +  +L 
Sbjct: 316 HITALSDQSVFVKSAVVGVAREALIAAALTAVMILLFLGSWRATLIIAVSIPLAVLTSLI 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             +  G   N+  +  +   +G  V+D  V  + +              D I     E  
Sbjct: 376 ALSALGQTINIMTLGGLALAVGILVDDATVAIENI---THHLENGEPLYDAILNGSGEIA 432

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +  ++++  I  +PM +  G     F +P+A  +V A  +S F +  ++  +
Sbjct: 433 VPTFVSTLSICIVFVPMFLLSGVARYLF-VPLAEAVVFAMIASYFFSRTLVPTL 485



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 58/163 (35%), Gaps = 7/163 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ +   + + + + F  W      I+ L   +          G   ++ A+   +  IG
Sbjct: 906  LVFAIGLVYLLMVVNFQSWLDPFIIISGLPGSLAGIAWMLFSTGTRLSVPALTGTILCIG 965

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+    +           ++        + T++A  I +LPMA+   
Sbjct: 966  IATANSILVINTARE---AHQAGQPPLAAALEAGFSRFRPVLMTALAMLIGMLPMALGLG 1022

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             GG         +  G+ +   S++     +   ++ W  K  
Sbjct: 1023 DGGEQNAPLGRAVIGGLALGTMSTLLFVPVVYGMVHAWLDKRR 1065



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 77/539 (14%), Positives = 160/539 (29%), Gaps = 41/539 (7%)

Query: 13   MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
             I    LL      L       F  A+    I L L    G+ +       D V   ++ 
Sbjct: 539  FIAIFLLLCLGSLALVPFAGRDFFPAVDTGEIRLHLRAPTGTRIEDTASITDQVEARVRD 598

Query: 73   YS--DELRSFLKKEGIGVFSMR----------QIQNKITLSF-----ADSRFKENIADKV 115
                 +L + L   G+ V  +                + ++        +++   +   +
Sbjct: 599  VIPKQQLAAILDNIGVPVSGINLTYDSSDPIGPEDADVMITLAPKHKPTAQYVATLRTTL 658

Query: 116  TLFLQGV-NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME------IIR 168
            T    GV  + L  D    +L       I I +  N +D   + A     +      ++ 
Sbjct: 659  TKDFPGVTFAFLPADIVSQILNFGLPAPIDIQIVGNKLDANRAVANRLLAQLRGVRGLVD 718

Query: 169  QRIDQIGISESTIQRLGSHRILIQLPGEQD--PSRLRQLLGTTAKMSFHKVLPNNSKKGF 226
             RI Q G + +    +   R +     ++D   + L  L G++       + P+N     
Sbjct: 719  ARIQQPGDAPAINVNVDRTRAIQAGLLQRDVSQNLLIALSGSSQTSPNFWLDPHNGVSYP 778

Query: 227  MFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
            +  +    D +  Q L    V   G   + A A     +       +     +       
Sbjct: 779  LMAMMPQYDINSLQALANIPVAQKGGATSPAAAASFSASGAGPAPQNLLGALSTLTRGTQ 838

Query: 287  RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
            +  +       +                   Q      +              LP   +I
Sbjct: 839  QAVVSHYNVQPV------------LDIFASVQGRDLGGVAADVNRLVEQIRPQLPPGASI 886

Query: 347  VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
            V    V A   S S          GLV +++ +         +    +  ++     +L 
Sbjct: 887  VVRGQVQAMHDSFSGLASGLVFAIGLVYLLMVVNFQSWLDPFIIISGLPGSLAGIAWMLF 946

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDS 466
              G  L++P++ G +L IG+A  ++ILV    RE ++  Q    +        +  +  +
Sbjct: 947  STGTRLSVPALTGTILCIGIATANSILVINTAREAHQAGQPPLAAALEAGFSRFRPVLMT 1006

Query: 467  NITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             +  LI  + +      GG         +   + +   + +  V  +   +  +   + 
Sbjct: 1007 ALAMLIGMLPMALGLGDGGEQNAPLGRAVIGGLALGTMSTLLFVPVVYGMVHAWLDKRR 1065


>gi|37524759|ref|NP_928103.1| hypothetical protein plu0758 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784184|emb|CAE13053.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 1013

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 78/689 (11%), Positives = 192/689 (27%), Gaps = 43/689 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R    +     ++   GL            +  +PS                       
Sbjct: 8   LRRPIIVTTFSGLLFIAGLFSI-----GYLPVGLYPSVDADAI---------SVSAFYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D ++G +        S +        +    ++K+ L  A     + +   +   + 
Sbjct: 54  ASADLMDGRVTSEVLSAVSGIDDINYVTSTSETGRSKVVLHLAMGSDTQKVLTNIMERVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S    D +   +       +       +       A + S  + R    ++   +  
Sbjct: 114 TI-SHFPDDMESPQISRQEADRVP--DFALSFTSETMQAAQVSDFLHRVVKPRLESLKGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    DP R+ +   T   +S    L N    G       LR      
Sbjct: 171 GNVEILGS-EYAMRIWLDPERMERHGVTAIDISKSLKLENAQANGGALHDSKLRFQ---- 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                                           +I    +     
Sbjct: 226 ---------------LVPETGLSTISDFANLSIMTATNISPVRLKDVADIELGGSQPEIK 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +         + + +   +     +        L++       + V   +     G+  
Sbjct: 271 SIFNGKPATIVLINWQQGSNPLLAADDIYKTIGELKSSFPYDLQSNVLIDSSEYIGGAVH 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +    V +V+F+     +  ++   +I L++I    ++ L G ++   ++  +
Sbjct: 331 EVFITILLTCCAVTLVIFLGAGTLRAVVIPVIAIPLSLIGVCLVIHLCGFSINTLTLLAM 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  GL VD  I+V +      R   + + +   G +   +++    +T  I  + L F 
Sbjct: 391 VLATGLVVDDAIIVLDIALHRMRMGDTPYQAALKGGNEIATSLVTMTLTLAIVYLPLAFI 450

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI---DINPLSRFFLI 534
           G   G     FA+T+  +++IS   A+S+   M   ++      S+    +  +      
Sbjct: 451 GGIVGKLFSEFAVTLAGAVIISGILALSLTPVMCARMLSTNHQHSLMVIRVEKMFARLRR 510

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                +  +             ++  + +LF    +     +    L V+A  P  +   
Sbjct: 511 SYERVLIRLVKTGNFPLWLWATTLAGVIILFIILPHALAPKEDQGSLMVIAEGPSVIGTD 570

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                +  + +I     +      V    +    ++  R++   +++ + I     +QN 
Sbjct: 571 YIEQHTPILENIYSTLPEIANFNYVIGVPKDNQLLSFVRLINWSERQRSTIQLQPELQNI 630

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIY 683
               P +   +I    +  +       + 
Sbjct: 631 IAKIPALQSVVILPSSLPGVGGLPFQFVL 659



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 81/247 (32%), Gaps = 7/247 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           F     +      PV L  V          +I           ++    Q  + +     
Sbjct: 238 FANLSIMTATNISPVRLKDVADIELGGSQPEIKSIFNGKPATIVLINWQQGSNPLLAADD 297

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI-RFKWYFA 693
           +     ++    P     N  I   +     + +  + ++++  A+ + I++        
Sbjct: 298 IYKTIGELKSSFPYDLQSNVLIDSSEYIGGAVHEVFITILLTCCAVTLVIFLGAGTLRAV 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  +  + L +        L G   N   + A++   G  V+D ++V D     +     
Sbjct: 358 VIPVIAIPLSLIGVCLVIHLCGFSINTLTLLAMVLATGLVVDDAIIVLDIA---LHRMRM 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             +      K  NE     V  ++   I  LP+A  GG V      FA+ +A  ++++  
Sbjct: 415 GDTPYQAALKGGNEIATSLVTMTLTLAIVYLPLAFIGGIVGKLFSEFAVTLAGAVIISGI 474

Query: 811 SSIFIAA 817
            ++ +  
Sbjct: 475 LALSLTP 481



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 61/162 (37%), Gaps = 11/162 (6%)

Query: 673  VIISAIAMLIYIWIRFKWYFALGAITTLI----LDITKTLGFFALFGIEFNLTAVAAVLT 728
            V  +   + IY  +  +    LG +  L+      +   L   + F +  ++     +LT
Sbjct: 849  VTFAIALVGIYCLLALQLTNYLGPLIVLLGSIPFSVLGALLALSWFDVPLDMFTQVGMLT 908

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSI-SFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            L+G      +++   ++    L+     S      ++    L   V T++   +  LP+ 
Sbjct: 909  LVGLISKQGILM---VQATDSLHKKGGISIYYATVRASASRLRAIVLTTLTMILGALPLL 965

Query: 788  VWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               G          + +  G++V +  ++F+   + +F++  
Sbjct: 966  FASGPAAESRFELGLVIIMGMLVGSCLTLFLLPSLYIFVHKK 1007


>gi|126667684|ref|ZP_01738652.1| Co/Zn/Cd efflux system membrane component [Marinobacter sp. ELB17]
 gi|126627787|gb|EAZ98416.1| Co/Zn/Cd efflux system membrane component [Marinobacter sp. ELB17]
          Length = 1049

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 73/609 (11%), Positives = 168/609 (27%), Gaps = 41/609 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +++   M+  +GL       L  + ++  P       I                 
Sbjct: 11  RNRGMVLLATFMLVGLGLYS-----LKNTPVNAIPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLSVPGSKTVRGYSFFGDSYVYVIFDDKTDIYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  L    T      +          +   +           ++       
Sbjct: 117 VAPSLPENARPQLGPDATGVGWVYLY-ALVDRTGKNDLSQLRSLQDWFLKYELQTVPGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q   + +P RLR      + +       N      +  +           
Sbjct: 176 EVAAIGGMVKQYQVQVNPERLRAFNIPLSHVQNAIRRGNQEVGASVVEMAEAEYMVRATG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   ++                   V+ +  ++ G         D    P        
Sbjct: 236 YIQSIEDLE------------------VIPLGVNQNGTPLLLRDVADIGIGPQMRRGVAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   +   +   TI         L+         +      G    +   
Sbjct: 278 LDGEGEVVGGLVVMRFGENAETTINGVKAKLESLKKSLPDGVEVVTVYDRSGLIDRAVEN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  S+ + ++    ++   G    + S+AGI 
Sbjct: 338 LWKKLLEEFLVVALVCVVFLFHVRSSLVAVISLPVGILTAFIIMHWQGINANIMSLAGIA 397

Query: 422 LGIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           + IG  VD  I++ E + +   +    +++ +  +    S     +F S +   ++ + +
Sbjct: 398 IAIGAMVDGAIVMIENMHKHMERTPLTDENRWQVVATAASEVGPALFFSLLIITVSFLPV 457

Query: 478 F---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G      A T   ++  S   AI++V  +M + IR K +             I
Sbjct: 458 FALEAQEGRMFSPLAFTKTYAMAASAILAITLVPVLMGYFIRGKVIAEHKNPLNRLLAAI 517

Query: 535 PDCIAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   +R  +   VG  ++ +I +  L            +G +         V +  
Sbjct: 518 YMPALRGVLRFPKATLVGAVVVLAIGAWPLDKIGSEFIPDLDEGDLMYMPTTYPGVSIGE 577

Query: 594 VRSNLESLQ 602
            R  L+   
Sbjct: 578 ARQILQQTN 586



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 84/285 (29%), Gaps = 20/285 (7%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +        +    + +   A   + L  V +         +  +N     
Sbjct: 756  LERYPINVRYPQDYRDSPEQLELLPIVTPAGLRIALGDVANIFVENGPPMLKSENARLNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               + ++        +     + ++                   +   +L       V +
Sbjct: 816  WTYIDIEGVDLGRYVENAQQVVAEQVELPPGYSLNWSGQYEYMLRAKEKLT----YVVPL 871

Query: 676  SAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   +++ +++ F+ +  +  I  TL L +  ++      G  F++      + L G +V
Sbjct: 872  TLAIIIVLLFLNFRNFVEVAMIMGTLPLALVGSIWLMYWEGFNFSVAVGVGFIALAGVAV 931

Query: 735  NDKVVVY-----------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               V++            DR      L     + R  +       +   + T+      +
Sbjct: 932  EIGVIMLVYLNQSWQQTIDRCHAQ-GLELREETLRHAVLHGAGMRVRPVLMTAATIIFGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            LP+      G  V+   A PM  G+V A   ++ +   I      
Sbjct: 991  LPILYGTGTGSEVMSRIAAPMVGGMVSAVVLTLLVLPAIYFMWKR 1035



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 63/161 (39%), Gaps = 10/161 (6%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +  L+ +   F    +L A+ +L + I          GI  N+ ++A +   IG  V+
Sbjct: 346 FLVVALVCVVFLFHVRSSLVAVISLPVGILTAFIIMHWQGINANIMSLAGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
             +V+     +NM  +       D     ++  + +E      ++ +   +S LP+    
Sbjct: 406 GAIVMI----ENMHKHMERTPLTDENRWQVVATAASEVGPALFFSLLIITVSFLPVFALE 461

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 F+ P+AF    A ++S  +A  ++  +  +  +  
Sbjct: 462 AQEGRMFS-PLAFTKTYAMAASAILAITLVPVLMGYFIRGK 501


>gi|218549850|ref|YP_002383641.1| copper/silver efflux system, membrane component [Escherichia
           fergusonii ATCC 35469]
 gi|218357391|emb|CAQ90030.1| copper/silver efflux system, membrane component [Escherichia
           fergusonii ATCC 35469]
 gi|324114706|gb|EGC08674.1| CzcA family protein heavy metal efflux pump protein [Escherichia
           fergusonii B253]
          Length = 1047

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAMVCALFLWHVRSALVAIISLPLGLCIAFIIMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 91/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +          ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMDFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLDNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|309700812|emb|CBJ00109.1| cation efflux system protein [Escherichia coli ETEC H10407]
          Length = 1047

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 65/600 (10%), Positives = 151/600 (25%), Gaps = 45/600 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMPFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSN------------- 467
           + +G  VD+ I++ E   +           ++    +R +  I D++             
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDAMLDNKTR-WQVITDASVEVGPALFISLLI 456

Query: 468 -ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
              + I    L    G      A T   ++  +   AI ++  +M + IR K        
Sbjct: 457 ITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNP 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                  +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 517 LNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|237712473|ref|ZP_04542954.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229453794|gb|EEO59515.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 1026

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 67/688 (9%), Positives = 188/688 (27%), Gaps = 54/688 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    +++ ++    +GL+           +   P                   + +++
Sbjct: 6   LQRPIAVLMAFTACFIVGLVT-----YFSLPVSLLPDIAIP-------------QITIQM 47

Query: 61  DEDDFVNGFLQM-YSDELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
             ++     L+      +R     +          R     I L F      +    +V 
Sbjct: 48  TGENSSARELENTVVTPVRRQLLQVAGLREIKSETRDGAGVIRLEFDFGVNTDLAFIEVN 107

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ-------NNIDQVISHAIEQSMEIIRQ 169
             +    + L  +  +   +  +  +I ++             +      +E        
Sbjct: 108 EKIDAAMNSLPKEVTRPKAIKASATDIPVLYVNMTLKNDGAYRETDEQQFLELCELAENV 167

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
              +I           +      L    D  +L     +   +       N      +  
Sbjct: 168 VKRRIEQLPEVAMADITGVPGRLLQIVPDKDKLAMTGISVEDIENTLSANNVEPGSMLVR 227

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
             +   +     L+    ++  I++                       G R         
Sbjct: 228 DGYYEYNIRIATLLRTPEDVRNIYI---------------------RKGERIMQLKEFCK 266

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +       +   V             ++  +    ++          A   P     V  
Sbjct: 267 VDVVSQKEMGRSVAGGKRAVTLAIIKQSDEN-MDAMKAKLKETTDYFASLYPDIEFSVSR 325

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   + S  +   ++    + IV  + +   +  L+   S+  ++++T        
Sbjct: 326 NQTELLDYTISNLQQNLSLGFLFIFIVAVLFLGDVRSPLIIGISMVTSIVITFFFFYFCH 385

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            +L + S++G++L +G+ +DS I+V E I +   +  S+  S  +G +   + +  S++T
Sbjct: 386 VSLNVISLSGLILAVGMMIDSAIIVTENISQYRERGYSLKRSCAVGTTEMITPMLSSSLT 445

Query: 470 ALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +   V L F     G      A ++ + ++IS  T I ++  + +   +        ++
Sbjct: 446 TIAVFVPLIFMSGIAGAIFMDQAFSITVGLMISYITGIMLLPVLYLLFYKAGIRSKGFLS 505

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 L  + +   + +   W      L  + ++  L      + +  K  +       
Sbjct: 506 RRFDNLLKNEWLESFYDKGIDWVFSHKKLCVVGTLATLPLCVFLFYVMEKERMPQIDQNE 565

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
               +    +         +       +        Y            E+   +     
Sbjct: 566 LVARIEWNENIHVDENNRRVDDLMKQVDDRVTEHTAYVGMQDYILNGGSELSSTEAELYF 625

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI 674
              +      +   + +E+  K  + V+
Sbjct: 626 KTESPSGIFSLQELLGKEIREKYPLAVV 653



 Score = 97.5 bits (240), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 7/162 (4%)

Query: 673  VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S + M   +  +F+ +   L  +  + +D    L    +FG   NL +   ++   G
Sbjct: 865  LFVSLLLMYFILCAQFESFLQPLIVLMEIPIDTAFALLALWVFGHTLNLMSAIGIIVTCG 924

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VND ++  D + +   L    +   + I  +    L   + TS+    +++P+     
Sbjct: 925  IVVNDSILKMDAINE---LRKAGMPLVEAIHTAGRRRLRAIIMTSLTTIFAMVPLLFTSD 981

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G  +    +I M   +VV    S+FI   I  FIY    KN
Sbjct: 982  MGSEMQKPLSIAMIGSMVVGTLVSLFIIPLIYWFIYRKHDKN 1023



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 24/286 (8%), Positives = 86/286 (30%), Gaps = 7/286 (2%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V    +                    +    + +     +        ++ +   ++   
Sbjct: 219 VEPGSMLVRDGYYEYNIRIATLLRTPEDVRNIYIRKGERIMQLKEFCKVDVVSQKEMGRS 278

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G++   + +  Q  +++   +            +      +      ++    I   
Sbjct: 279 VAGGKRAVTLAIIKQSDENMDAMKAKLKETTDYFASLYPDIEFSVSRNQTELLDYTISNL 338

Query: 670 IVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
              + +  + + I  +         L    +++  I  T  FF    +  N+ +++ ++ 
Sbjct: 339 QQNLSLGFLFIFIVAVLFLGDVRSPLIIGISMVTSIVITFFFFYFCHVSLNVISLSGLIL 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  ++  ++V + +    +      S +        E +   + +S+      +P+  
Sbjct: 399 AVGMMIDSAIIVTENI---SQYRERGYSLKRSCAVGTTEMITPMLSSSLTTIAVFVPLIF 455

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G     F   A  +  G++++  + I +   + L  Y    ++ 
Sbjct: 456 MSGIAGAIFMDQAFSITVGLMISYITGIMLLPVLYLLFYKAGIRSK 501


>gi|194428006|ref|ZP_03060551.1| cation efflux system protein cusA [Escherichia coli B171]
 gi|194413981|gb|EDX30258.1| cation efflux system protein cusA [Escherichia coli B171]
 gi|323158744|gb|EFZ44757.1| cation efflux system protein cusA [Escherichia coli E128010]
          Length = 1047

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 154/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S++GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLSGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 51.2 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 91/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++       +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFAQVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|330992426|ref|ZP_08316374.1| Nodulation protein nolG [Gluconacetobacter sp. SXCC-1]
 gi|329760625|gb|EGG77121.1| Nodulation protein nolG [Gluconacetobacter sp. SXCC-1]
          Length = 1074

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 62/517 (11%), Positives = 155/517 (29%), Gaps = 38/517 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L  +I   G++  L     ++  D FP+   K  +   +   GG       
Sbjct: 20  LRRPYTFVVLSILIVVFGIMAVL-----RTPTDVFPNI--KIPVVSVVWTYGGML----- 67

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             ++F    +  Y   + S ++       S    +  + + F           +VT   Q
Sbjct: 68  -PEEFAGRIIYNYELMVTSTVEGIEHMESSSYYGRGIVNIYFQPGTDIGKAEAEVTAISQ 126

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L  +    ++++     + ++  Q   D+      +     + +    +      
Sbjct: 127 TVIKQLPENIPSPMVMSLDASSVPVLTLQVTSDKQTPS--DLFKLAMIRVRPLLVTVPGA 184

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           +       +   +    +  +L+    +   +       N         +          
Sbjct: 185 VVPQAYGGMDSFVMVALNQQQLQAHHLSAMDVQNALRGQNIVLPAGDQKISSTDWMVQTN 244

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  E+                     DI    +G    +      + +      + 
Sbjct: 245 ATPRSMKELG--------------------DIPVKRVGNAVIYVHDVAEVYRGGHPQTNL 284

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            ++      + +       S    +  A  L   ++    P     +          S  
Sbjct: 285 VLVKGKQGVEIVVMKSGDASTLDVVAGAKALLPRIQKLLPPDVKVSILGDASVFVKDSIF 344

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L  +V+ + +   +  L+   SI L ++  +  L+  G T+ + ++ G+
Sbjct: 345 DVVREMLTAAFLTGMVVLLFLGSWRPTLIIATSIPLAILCAIIGLNWAGQTINVMTLGGL 404

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   ++ E I       +++  ++    ++     F +     I  + LF  
Sbjct: 405 ALAVGILVDDATVMIENIDAHLEMGKALEPAIIDAANQIVIPTFVATTCICIVWLPLFGL 464

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G         A  +  +++ S   + ++V  M  F+
Sbjct: 465 SGVAGWLFMPMAEAIIFAMIASFILSRTLVPTMAKFL 501



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 66/161 (40%), Gaps = 5/161 (3%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            + G+++S + + + I + F  W      IT L   +        L     ++ A+   + 
Sbjct: 912  VFGLVVSVMLIYLLIVVNFQSWLDPFIIITALPGALAGIAWALFLTHTRLSVPALTGAIM 971

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G +  + ++V    R+  ++     + R  ++      +   + T++A  I ++PMA+
Sbjct: 972  CMGTATANSILVVSFARE--RIEEHGDALRAALEAGYGR-IRPVLMTALAMVIGMVPMAM 1028

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                        +  G++VA  S++     +   +++  ++
Sbjct: 1029 SNSQN-APLGRAVIGGLLVATVSTLLFVPCVYAILHNRPSR 1068



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 56/155 (36%), Gaps = 4/155 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +  + +  ++ +     W   L   T++ L I   +      G   N+  +  +   +G
Sbjct: 350 MLTAAFLTGMVVLLFLGSWRPTLIIATSIPLAILCAIIGLNWAGQTINVMTLGGLALAVG 409

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V+ + +           +    I  + N+ +  +   +    I  LP+    G
Sbjct: 410 ILVDDATVMIENI---DAHLEMGKALEPAIIDAANQIVIPTFVATTCICIVWLPLFGLSG 466

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                F  PMA  I+ A  +S  ++  ++  +  +
Sbjct: 467 VAGWLFM-PMAEAIIFAMIASFILSRTLVPTMAKF 500


>gi|296157986|ref|ZP_06840819.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
 gi|295891754|gb|EFG71539.1| acriflavin resistance protein [Burkholderia sp. Ch1-1]
          Length = 1079

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/636 (9%), Positives = 161/636 (25%), Gaps = 49/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  +I       A P  L  + +D  P                   ++   
Sbjct: 8   LKRPYTFIVMAILILL-----ATPFVLLTTPVDVLPEINIPV-----------VSIIWT- 50

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                    +      +        +                + +    +   ++   + 
Sbjct: 51  -YTGLSAQDMANRITSVNERSLTTTVNDIEHIESQSLAGITILKVFLQPTANIQSAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    ++       L+++ +   I ++    +  ++   A   +   +     Q+ 
Sbjct: 110 VAVEQAQLKQMPPGATPPLVISYSASSIPVIQLGLSSPKLSEQA--LNDTALNFLRPQLV 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + D   L     T + +       N         +     
Sbjct: 168 TIPGAAVPYPYGGKSRLISVDLDTRALLAKGLTPSDVVSAFNAQNLILPTGTAKIGPKEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +            +                     DI    +     +     ++    +
Sbjct: 228 TINMNGSPATVEGL--------------------NDIPVRTLNGATTYLREVAHVRDGYS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +++   L    +A   P              
Sbjct: 268 PQTNIVRQDGHRGVLMSVLKNGSASTLSIVDSLRGLLPAAQAALPPDLKITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         + A L   ++ + +   +   +   SI L+++ +L  L  LG T+ + 
Sbjct: 328 KAAVQGVVREALVAAALTAAMILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHMGTNLHDAILDGAGEIAIPALVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + ++ +           + F 
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLMGHAHKPK-PGAKPNLFM 506

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +       F   R   + I     +              +       LG      VD  
Sbjct: 507 RLYHRFDRGFESMRAAYIMILSSVLVRRGMFGSVFLGFCVVSMGLIFVLGEDFFPSVDAG 566

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P + 
Sbjct: 567 DIRLHMRAPTGTRIEETARLADEVENVIREVVPANE 602



 Score = 63.9 bits (153), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 671  VGVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +GV ++   +L+Y+ I      W   L  ++ L   +   +    L G   ++ A+   +
Sbjct: 883  LGVGVAMAIVLVYLLIVVNFQSWVDPLIIVSALPAALAGIVWMLFLTGTHLSVPALTGAI 942

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              +G +  + +++    R   +  +          ++    +   + T+ A  I ++PMA
Sbjct: 943  MTMGVATANSILMVAFAR---QRLSAGAPPLTAALEAGASRIRPVLMTAFAMIIGMIPMA 999

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +    G          +  G++ A  S++F    +   I+   A+  R
Sbjct: 1000 LGLGEGAEQNAPLGRAVIGGLLFATVSTLFFVPLVFAAIHTRLARRHR 1047



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +     W        ++ L I  +L      G   N+  +  +   +G  V+D  V  
Sbjct: 348 MILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIMTLGGLALAVGILVDDATVTI 407

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           + +    +      +  D I     E    ++ +++   I  +PM    G     F +P+
Sbjct: 408 ENI---ERHLHMGTNLHDAILDGAGEIAIPALVSTLCICIVFVPMFFLTGVARYLF-VPL 463

Query: 802 AFGIVVAASSSIFIAAPILLFI 823
           A  +V A  +S  ++  ++  +
Sbjct: 464 AEAVVFAMLASYVLSRTLVPTL 485


>gi|332665367|ref|YP_004448155.1| acriflavin resistance protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334181|gb|AEE51282.1| acriflavin resistance protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 1029

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 82/666 (12%), Positives = 197/666 (29%), Gaps = 45/666 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  + +I++ M+  +GL     + L        P       + L          V    
Sbjct: 9   KNYQFTIIIFVMVLLLGL-----SALFNMPRGEDPPFGAPIFVVLA---------VYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   L    ++  S L+              K+ L F      +   + V   +  
Sbjct: 55  SPEDVEELLADPIEDALSELEDIKKINTDCDDGLMKLQLEFTFGVDVDAKNNDVIREINR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D     ++  +  +++I+ +           ++   E +++R+++I   +   
Sbjct: 115 LRGTLPEDLLLLDVIRASSSDVAILQTAITSPTAPYAEMKAVAEKLQKRLEKIRDLKEVE 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
            +    R +          ++ Q      ++       N +  G    +   + +     
Sbjct: 175 IQAYPERKIDVEINL---EKMAQNRLGLNQVLGSIQANNVNIPGGSIDLGAKKFNIETTS 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E+  ++    +                         R  +     N+    A V    
Sbjct: 232 SLENLSDLRNTVVQSTAE-------------------GRIVYLRDIANVQYGEADVDHLA 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I   K + +          + A                            
Sbjct: 273 RFNGVRAIWVITKLKDRKNIIQADAKIKPVLAEFTQELPANMKLENGFDQAVNVEHRLGG 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     + L++L ++ L  +  LV   SI L++ + LALLS  G TL   SI G+V
Sbjct: 333 L--GRDFAIAVFLVMLTLVPLGWRASLVVMISIPLSLSIGLALLSAFGFTLNQLSIVGLV 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +GL VD +I++ E I    R   +   +  +   +    +     T ++A + L F  
Sbjct: 391 VSLGLLVDDSIVIVENIERFLRMGYNRKDAAILATKQIGVAVIGCTATLILAFLPLAFLP 450

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  +R   + + L+++ S+F AI+I+  +   ++R  +    +    +    + D  
Sbjct: 451 EGSGEFIRSLPMAVMLTVIASLFVAITIIPFLSSLLLRQHEQSEGNFFMRAFKRYLNDPY 510

Query: 539 A----IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  F       +  +++F    + +       +    K    + +       L+  
Sbjct: 511 RVVLLWGFRHPFLTLLFTALIFGASLLLVPSIGFSLFPASEKPMFNVDIETPLGSSLAET 570

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
                 ++               + +   +   +  Q        +   ++     +   
Sbjct: 571 DRIAHKVEAELWRHPQTRTVSTNVGKGNPRVYYNEFQRNQASNYAQLFVQVEREMQVPEI 630

Query: 655 EIVGPK 660
             +   
Sbjct: 631 VALTDS 636



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 63/153 (41%), Gaps = 8/153 (5%)

Query: 678 IAMLIYIW--IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           IA+ + +   +   W  +L  + ++ L ++  L   + FG   N  ++  ++  +G  V+
Sbjct: 339 IAVFLVMLTLVPLGWRASLVVMISIPLSLSIGLALLSAFGFTLNQLSIVGLVVSLGLLVD 398

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GS 792
           D +V+ + + + +++       +D    +  +     +  +    ++ LP+A      G 
Sbjct: 399 DSIVIVENIERFLRMGYNR---KDAAILATKQIGVAVIGCTATLILAFLPLAFLPEGSGE 455

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            I S  + +   ++ +   +I I   +   +  
Sbjct: 456 FIRSLPMAVMLTVIASLFVAITIIPFLSSLLLR 488



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 71/203 (34%), Gaps = 6/203 (2%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                  ++   T  +     +       + +   E    + S   I   I+  +   + +
Sbjct: 811  FVETGYNTAKLTDEILEKMAQYPFPKGYTYMAGGERESAEESFGGIGTIIIISVFGLLGI 870

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            L+  +  FK    + ++  L   I   L    L G   +  A   ++ L+G  + + +++
Sbjct: 871  LVLEFRTFKSTIIVLSVIPL--GIIGALVILWLTGETLSFVATIGMIALVGIEIKNSILL 928

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
             D      +L    +     I +         + T++ A   ++P+ +    +I   A  
Sbjct: 929  VD---YTNQLREQGMPLEQAITEGAETRFLPILLTTITAIGGLIPLVLENSPLISPLAWV 985

Query: 801  MAFGIVVAASSSIFIAAPILLFI 823
            +  G++ +   S  I  P+L  +
Sbjct: 986  LIGGLISSTLLSR-IVTPLLYKL 1007


>gi|294783169|ref|ZP_06748493.1| acriflavin resistance protein B [Fusobacterium sp. 1_1_41FAA]
 gi|294480047|gb|EFG27824.1| acriflavin resistance protein B [Fusobacterium sp. 1_1_41FAA]
          Length = 1020

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 74/618 (11%), Positives = 167/618 (27%), Gaps = 44/618 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++      IGLL            +  P                         
Sbjct: 9   RRPVATTMVMLSFIFIGLLAMF-----SMKKELIPDIKVPVVT---------ISTTWSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +     +  S +              + + ++F      +    ++   +  
Sbjct: 55  VSEDVEAQVTKKIKDSLSNVDAIDKIQTVSAYSSSTVVVNFDYGVDTDEKVTQIQREVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    L+        ++      I          +  I  Q   ++       
Sbjct: 115 ITNSLPSDANTPLIRKVEAASGNMTAV---IAFNADSKTALTTFIKEQLKPRLESLPGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         QL  + D  +L     +  ++         +                   
Sbjct: 172 QVDIFGNPDKQLQIQVDSDKLASYNLSPMELYSIVRTSVATYPIGKLS------------ 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G          D        +I     G          ++        +  
Sbjct: 220 --------TGNKDMIIRFMGDLDYIDQYKNILISSNG-NTLRLKDVADVVLTTEDADNVG 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +    +          A      ++          +E         S S 
Sbjct: 271 YLNGKEAIVVLLQKSSDGDTITLNNAAFKAIEEMKPYMPAGTEYSIEMDASENINSSISN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      L  I+LF  +   +  ++   ++ + ++ T A LS+ G TL L S+ G+ 
Sbjct: 331 VSSSAVQGLVLATIILFAFLKSFRTTVLISVALPVAIVFTFAFLSMRGTTLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSV-FCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +G+G+  D++++V + I     +  S    + + G      ++  S +T ++  + + F 
Sbjct: 391 IGVGMLTDNSVVVVDNIYRHITELNSPVREAAENGTEEVTFSVIASALTTIVVFLPILFI 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R  +  +  S L ++  AI+++  +    +  K MKS D     +       
Sbjct: 451 PGLAREFFRDMSYAIIFSNLAAIIVAITMIPMLASRFLNRKSMKSEDGKLFKKVKGFYLK 510

Query: 538 IAIQFMRARFWGVGISILFSICSI--CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           I  + +  +   V I +     SI                +G   L     +  DL+   
Sbjct: 511 IINKAISHKGLTVLIMVGLFFFSILVGPKLLKFEFMPKQDQGKYSLTAELQKGTDLAKAE 570

Query: 596 SNLESLQIGDISFQNFDG 613
              + L+    +  + + 
Sbjct: 571 RIAKELEEIVKNDPHTES 588



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 86/246 (34%), Gaps = 7/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D   V+ +  +             +              V   ++   + ++   + P S
Sbjct: 762  DNKFVKLSDVATLQYAEGTSEVRKKNGIYTVTISGNDGGVGLGKIQSKIIEEFNNLEPPS 821

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
            TI  +     +  ++ + +    + IS   +   +  +F+ +      I ++ L +   +
Sbjct: 822  TISYSWGGQSENMQKTMSQLSFALSISIFLIYALLAAQFESFLLPFIIIGSIPLALIGVI 881

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                +     ++  +  V+ L G  VN+ +V+ D ++    + T        I  S    
Sbjct: 882  WGLVVLRQPIDIMVMIGVILLAGVVVNNAIVLIDFIK---TMRTRGYDKEYAIIYSCEIR 938

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + T+M     ++PMA+    G       AI + FG+  +   ++ +   +   +  
Sbjct: 939  LRPILMTTMTTVFGMIPMALGLGEGSEFYRGMAITVIFGLAFSTILTLVLIPILYSVVDS 998

Query: 826  WRAKNA 831
            +  K A
Sbjct: 999  FTTKMA 1004



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 78/240 (32%), Gaps = 3/240 (1%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V    L +    ++ + N       L++               + +++    +   +  
Sbjct: 255 DVADVVLTTEDADNVGYLNGKEAIVVLLQKSSDGDTITLNNAAFKAIEEMKPYMPAGTEY 314

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    I+  +       V    +A +I       +   +     L + I  T  F 
Sbjct: 315 SIEMDASENINSSISNVSSSAVQGLVLATIILFAFLKSFRTTVLISVALPVAIVFTFAFL 374

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           ++ G   NL ++  +   +G   ++ VVV D +     +   +   R+  +    E    
Sbjct: 375 SMRGTTLNLISLMGLSIGVGMLTDNSVVVVDNI--YRHITELNSPVREAAENGTEEVTFS 432

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            + +++   +  LP+    G     F   M++ I+ +  ++I +A  ++  +        
Sbjct: 433 VIASALTTIVVFLPILFIPGLA-REFFRDMSYAIIFSNLAAIIVAITMIPMLASRFLNRK 491


>gi|295688265|ref|YP_003591958.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
 gi|295430168|gb|ADG09340.1| acriflavin resistance protein [Caulobacter segnis ATCC 21756]
          Length = 1022

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 70/604 (11%), Positives = 164/604 (27%), Gaps = 46/604 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   + ++ + ++  +G+     N          P       +            VL   
Sbjct: 11  RRWQFTLVAFGLLVMLGI-----NAFNTVPRSEDPHFPVPIVV---------VRAVLPGA 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           E   +   +    ++    L                I++ F      E   D+V   +  
Sbjct: 57  EPTEIEQLITDPIEDAVDGLDNIDKIESFSGDGAAVISVHFTWDVDPERKYDQVVREVNA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L     +  +      E++IV      D +    +E++ + +R+R+D+        
Sbjct: 117 IRGNLPAGLTRLDIQRVRTSEVAIVQVALTSDILPMRRLEKTADRLRERLDR---VPGVR 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++    D +RL  L      ++                            
Sbjct: 174 ESKYWGAPPSEVQVTLDLARLSALKLPATAVADALKSAGAEAPIG--------------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G       +    ++   + D     +G +         +           
Sbjct: 219 -----AVQAGERRFNVKSGGAFRSLDTIADTPVRAVGGQVTRVRDVATVAWAQQEPSHLA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + K         +    +                            + 
Sbjct: 274 RFNGKRAVFVTVTQKDGQDVARITQAVQAVLDDYEKTLPAGVKLERGFVQAENVKHRLNN 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     L L+++ ++ L  + G+V   SI L++++ L +L   G TL   SIAG V
Sbjct: 334 LFRD--FGIALALVLITLLPLGPRAGVVVMVSIPLSLLIGLTMLQAFGFTLNQLSIAGFV 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD +I++ E I    R+ +    +   G  +    +     T ++A + L    
Sbjct: 392 LALGLLVDDSIVITENIARRIREGEERTAAAINGTRQISLAVLGCTATLMLAFLPLMALP 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS----IDINPLSRFFLI 534
              G  ++   +T+  +I  S+  +++I+  +   ++           +           
Sbjct: 452 AGSGAYIKSLPVTVLCTIAASLLVSMTIIPFLASRLLDKHSDPEGNALLRAVNNGIHHFY 511

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +     R       +  +       +       +         + V       L+  
Sbjct: 512 RPVLHRALARPWLTLAILLAICLTTLPLVKLIGSSLFPSAETPQFLIRVETPDGSSLART 571

Query: 595 RSNL 598
              L
Sbjct: 572 DRAL 575



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 68/213 (31%), Gaps = 7/213 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
           F+   Q    D    T+ ++ V     + +P         V  +  +  +        I+
Sbjct: 282 FVTVTQKDGQDVARITQAVQAVLDDYEKTLPAGVKLERGFVQAENVKHRLNNLFRDFGIA 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
              +LI + +       +  + ++ L +   L     FG   N  ++A  +  +G  V+D
Sbjct: 342 LALVLITL-LPLGPRAGVVVMVSIPLSLLIGLTMLQAFGFTLNQLSIAGFVLALGLLVDD 400

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV--- 793
            +V+ + +    +                 +     +  +    ++ LP+          
Sbjct: 401 SIVITENI---ARRIREGEERTAAAINGTRQISLAVLGCTATLMLAFLPLMALPAGSGAY 457

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           I S  + +   I  +   S+ I   +   + D 
Sbjct: 458 IKSLPVTVLCTIAASLLVSMTIIPFLASRLLDK 490



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 70/158 (44%), Gaps = 5/158 (3%)

Query: 672  GVIISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             V+++   +L  + + F+ +     +  +I   +   +   AL G   + TA   V+ LI
Sbjct: 865  AVLVAVFGILAVLVLEFQKFKTAIVVAGIIPFGVFGAVLALALTGHSLSFTATIGVIALI 924

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
            G  + + +++ D   + ++     ++  D I+K+        + TS+ A   +LP+A+  
Sbjct: 925  GIEIKNSILLVD-FTEQLR--REGMTLHDAIEKAGEVRFLPVLLTSVTAIGGLLPLALER 981

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              +    AI +  G++ +   S  +A P++ ++     
Sbjct: 982  SGLYSPLAIAIIGGLITSTLLSR-VATPVMYWLTARGK 1018


>gi|168704256|ref|ZP_02736533.1| probable multidrug efflux pump, AcrB/AcrD/AcrF family protein
           [Gemmata obscuriglobus UQM 2246]
          Length = 1054

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 84/620 (13%), Positives = 173/620 (27%), Gaps = 42/620 (6%)

Query: 18  GLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDEL 77
           G++        +   D FP         + L   G     +  D  D     L +    L
Sbjct: 25  GIVAIY-----KMPQDNFPDIDIPVVTVVYL-YSG-----MPAD--DIEKRILLVTERVL 71

Query: 78  RSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVT 137
            + +                I + F  +   E    +VT   Q V S +        +V 
Sbjct: 72  TASVNDIEHMESQAYTGTGVIRIYFRPNAKIEAATAQVTATCQTVLSNMPQGTTPPYIVR 131

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
            +   + +     + D +     E         I ++G  +             Q+  + 
Sbjct: 132 YSATSVPVAQIAVSSDTLTEA--ELYDYAANFIIQRLGTVQGARVPQPYGGKPRQIMVDL 189

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           DP +L     + A +S      N         +     +       E             
Sbjct: 190 DPQQLYARGLSAADVSTAVNAQNLILPAGTAKIGETDFNIKVNSSPE------------- 236

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                    +    +    +     +      +    AV  +                  
Sbjct: 237 -------LVEAFNQMPVKTVNGTPVYLRDVAQVRDGYAVQTNVVRRDGKRAVLLPIMKGE 289

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
             S    +         ++A   P     V          S +      A+ AGL  +++
Sbjct: 290 GASTIEVVSRVRQALPGIQAQLPPELKLEVLFDQSVFVRESVNGVLHEGAVAAGLTALLI 349

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
            + +   +  L+   SI L+V+ ++  L   G TL + ++ G+ L +G+ VD   +  E 
Sbjct: 350 LVFLGSWRSTLIIIISIPLSVMCSILCLWAFGETLNVMTLGGMALAVGILVDDATVEIEN 409

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR---GFAITMGL 494
           +       + +  ++  G  +       S +   I  V + F  G A       A+ +  
Sbjct: 410 VHRNMAMRKPLRHAILDGAQQIAIPALVSTLAICIVFVPVVFLTGPAAYLFIPLAMAVIF 469

Query: 495 SILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR---FFLIPDCIAIQFMRARFWGVG 551
           ++L S F + ++V  +M+F++  +  +       +    F  +       F R R    G
Sbjct: 470 AMLASYFLSRTLVPTLMLFLLGREARQYASGQHDAPSGVFGKLHAKFESTFERVRQAYRG 529

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR-SNLESLQIGDISFQN 610
           +           +          F     +G      VD   +R              + 
Sbjct: 530 LLDWALHNRGVTVALMLGFAIGSFALVPFIGRDFFPTVDAGQIRLHVRAPAGTRLEETER 589

Query: 611 FDGEKNFLVRLQYQPGDSVA 630
             G+   ++R Q    +   
Sbjct: 590 IFGQIEDVIREQIPDAERDT 609



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 9/163 (5%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V     A+LI +     W   L  I ++ L +  ++     FG   N+  +  +   +G
Sbjct: 339 AVAAGLTALLILV-FLGSWRSTLIIIISIPLSVMCSILCLWAFGETLNVMTLGGMALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + + +NM +       R  I     +    ++ +++A  I  +P+    G
Sbjct: 398 ILVDDATVEIENVHRNMAM---RKPLRHAILDGAQQIAIPALVSTLAICIVFVPVVFLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIA----APILLFIYDWRAKN 830
                F IP+A  ++ A  +S F++      ++LF+    A+ 
Sbjct: 455 PAAYLF-IPLAMAVIFAMLASYFLSRTLVPTLMLFLLGREARQ 496



 Score = 45.8 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 20/141 (14%), Positives = 46/141 (32%), Gaps = 6/141 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      +  L       L      G   ++ A+   +  +G +  + +++     +  
Sbjct: 907  SWTDPFVILMALPGAAAGILWALFATGTTVSVPALMGGIMTVGVATANSILMVTFANEKR 966

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                     R     + +  L   + T+MA    +LPM++    GG         +  G+
Sbjct: 967  AAGLNG---RRAALAAGSTRLRPVLMTAMAMIAGMLPMSLGHGEGGEQNAPLGRAVIGGL 1023

Query: 806  VVAASSSIFIAAPILLFIYDW 826
             VA + ++F    +   +   
Sbjct: 1024 TVATAYTLFFVPVMYSLLRPK 1044


>gi|193069095|ref|ZP_03050053.1| cation efflux system protein cusA [Escherichia coli E110019]
 gi|192957639|gb|EDV88084.1| cation efflux system protein cusA [Escherichia coli E110019]
          Length = 1047

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 154/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPETRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I +       L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIASVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|187920550|ref|YP_001889582.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
 gi|187718988|gb|ACD20211.1| acriflavin resistance protein [Burkholderia phytofirmans PsJN]
          Length = 1082

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 66/636 (10%), Positives = 163/636 (25%), Gaps = 49/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  +I       A P  L  + +D  P                   ++   
Sbjct: 8   LKRPYTFIVMAILIVL-----ATPFVLFTTPVDVLPEINIPV-----------VSIIWT- 50

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                    +      +        +                + +    +   +    + 
Sbjct: 51  -YTGLSAEDMANRITSVNERSLTTTVNDIEHIESQSLAGITILKVFLQPNANIQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    ++       L+++ +   I ++    +  ++   A   +   +     Q+ 
Sbjct: 110 VAVEQAQLKQMPPGATPPLVISYSASSIPVIQLGLSSPKLSEQA--LNDTALNFLRPQLV 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + +   L     T + +       N         +     
Sbjct: 168 TIPGAAVPYPYGGKSRLISVDLNTRALLAKGLTPSDVVSAFNAQNLILPTGTAKI----- 222

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                          G        N  P T + + DI    +     +     ++    +
Sbjct: 223 ---------------GAKEYTIDMNGSPTTLEGLNDIPVRTLNGATTYLREVAHVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    + T   L    +A   P              
Sbjct: 268 PQTNIVRQDGHRGVLMSVLKNGSASTLSIVNTLKGLMPNAQAALPPDLKITALFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         + A L   ++ + +   +   +   SI L+++ +L  L  LG T+ + 
Sbjct: 328 KAAVQGVVREALVAAALTAAMILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHMGTNLHDAILDGAGEIAIPALVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + ++ +           + F 
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYILSRTLVPTLAMLLMGHAHKPK-PGAKPNLFM 506

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +       F R R   + I     +              +       LG      VD  
Sbjct: 507 RLYHRFDRGFERMRAGYIMILSSLLVRRGRFGSVFLGFCVVSMGLIFVLGEDFFPSVDAG 566

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P   
Sbjct: 567 DIRLHMRAPTGTRIEETARLADQVENVIREVVPHKE 602



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 671  VGVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +G+ ++   +L+Y+ I      W   L  ++ L   +   +    L G   ++ A+   +
Sbjct: 883  LGLGVAMAIVLVYLLIVVNFQSWVDPLIIVSALPAALAGIVWMLFLTGTHLSVPALTGAI 942

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              +G +  + +++    R   +  +          ++    +   + T+ A  I ++PMA
Sbjct: 943  MTMGVATANSILMVSFAR---QRLSAGAPPLTAALEAGASRIRPVLMTAFAMIIGMIPMA 999

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +    G          +  G++ A  S++F    +   I+   A+  R
Sbjct: 1000 LGLGEGAEQNAPLGRAVIGGLLFATVSTLFFVPLVFAAIHSRLARRHR 1047



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +     W        ++ L I  +L      G   N+  +  +   +G  V+D  V  
Sbjct: 348 MILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIMTLGGLALAVGILVDDATVTI 407

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           + +    +      +  D I     E    ++ +++   I  +PM    G     F +P+
Sbjct: 408 ENI---ERHLHMGTNLHDAILDGAGEIAIPALVSTLCICIVFVPMFFLTGVARYLF-VPL 463

Query: 802 AFGIVVAASSSIFIAAPILLFI 823
           A  +V A  +S  ++  ++  +
Sbjct: 464 AEAVVFAMLASYILSRTLVPTL 485


>gi|300931456|ref|ZP_07146781.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 187-1]
 gi|300460738|gb|EFK24231.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 187-1]
          Length = 1047

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|296532994|ref|ZP_06895646.1| acriflavin resistance protein [Roseomonas cervicalis ATCC 49957]
 gi|296266682|gb|EFH12655.1| acriflavin resistance protein [Roseomonas cervicalis ATCC 49957]
          Length = 1030

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/471 (11%), Positives = 131/471 (27%), Gaps = 24/471 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
             +       + +   +    +     +        S       I + F  SR +E+ A 
Sbjct: 47  VSVNQPGANPETLAATVIAPLERQIGAIAGITEMTSSAGSGSGNIIIQFDLSRTQESAAR 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +      L         V       + VL        +  A             +
Sbjct: 107 DVQAAVNAARQDLPSGLPNPPSVRKINPADAPVLILAMTADTLPRA-SLYDVADSIVAQR 165

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   Q   +      +    DP+       +   +       N ++   +      
Sbjct: 166 LAQIQGVAQVQVAGTAKPAVRVSVDPAAAAAAGVSFDDIRTAITAANVTQPVGLIDGEEQ 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S      +                            +                 I + 
Sbjct: 226 AASIAVNDRLGRA--------------------PQYESVVVQARDGAVLRLSRLARISEG 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            A                +   +A  +    +     +   L+          V     G
Sbjct: 266 AASSRQMAWFDQREATLMLVFKQADANVIDVVNGVKEMLPQLQRWVPGGVRIDVMSDRSG 325

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S    + T  +   LV+ V+ + +      + A  ++ L+++ TL ++ +LG +L 
Sbjct: 326 TIRASVEEVEFTLLLTIALVIAVVAVFLRRLAPVVAASVTVPLSLLGTLFVIWMLGYSLN 385

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + + +G  VD  I++ E +     K  +V  +   G  +   TI    ++ +  
Sbjct: 386 NFSLMALTISVGFVVDDAIVMLENMSRMRAKGMAVMQAALEGARQIGFTIISITVSLIAV 445

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            V L   G   G   R F+ T+ +++ +S   ++++   +   + R  + +
Sbjct: 446 FVPLLAMGGLVGRFFREFSATLAIAVTLSAVLSLTLTPMLAARLEREGEER 496



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 66/163 (40%), Gaps = 11/163 (6%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           + ++I+ +A+ +      +    + A  T+ L +  TL    + G   N  ++ A+   +
Sbjct: 342 IALVIAVVAVFL-----RRLAPVVAASVTVPLSLLGTLFVIWMLGYSLNNFSLMALTISV 396

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G+ V+D +V+ + M    ++    ++      +   +     +  +++     +P+   G
Sbjct: 397 GFVVDDAIVMLENM---SRMRAKGMAVMQAALEGARQIGFTIISITVSLIAVFVPLLAMG 453

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           G V      F+  +A  + ++A  S+ +   +   +     + 
Sbjct: 454 GLVGRFFREFSATLAIAVTLSAVLSLTLTPMLAARLEREGEER 496



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 92/246 (37%), Gaps = 6/246 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D  V  S +  ++      +     +     + +      +       V++    +    
Sbjct: 778  DAQVPLSAVARIERDMSPLRVTHRNQFPAATISFNLPVGTSLGEAQARVREVELGLDLPP 837

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
             I++         +   R   + ++ + +++ I + + ++ +   L  ++TL       L
Sbjct: 838  GIRSEYGGNAAAFQAFSRDQPLLILAAILSIYIVLGVLYESYIHPLTILSTLPTAGIGAL 897

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                + G+ F++ A+  V+ L+G    + +++ D   ++ +           I  +  + 
Sbjct: 898  LALLVTGLPFSVIALIGVILLMGIVKKNAIMMVDFALEHAREE--GADAEASILAACRDR 955

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + T++AA    +P+A     G  +     I +  G++V+   +++    I L +  
Sbjct: 956  FRPILMTTLAALFGAVPLAFGTGTGAEMRQPLGITIIGGMIVSQLLTLYTTPVIYLALER 1015

Query: 826  WRAKNA 831
             R ++A
Sbjct: 1016 LRQRHA 1021


>gi|289806684|ref|ZP_06537313.1| preprotein translocase subunit SecF [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 126

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 42/125 (33%), Positives = 79/125 (63%), Gaps = 1/125 (0%)

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +  TLG  +LF IE +LT VA+++++IGYS+ND +VV DR+R+N +       + ++ + 
Sbjct: 1   MIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVSDRIRENFRKIRRGTPY-EIFNV 59

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           S+ +TL R++ TS    + +L + ++GG V+  F++ M  G+ +  +SSI++A+ + L +
Sbjct: 60  SLTQTLHRTLITSGTTLVVILMLYLFGGPVLEGFSLTMLIGVSIGTASSIYVASALALKL 119

Query: 824 YDWRA 828
              R 
Sbjct: 120 GMKRE 124


>gi|254442900|ref|ZP_05056376.1| heavy metal efflux pump, CzcA family [Verrucomicrobiae bacterium
           DG1235]
 gi|198257208|gb|EDY81516.1| heavy metal efflux pump, CzcA family [Verrucomicrobiae bacterium
           DG1235]
          Length = 1034

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 81/683 (11%), Positives = 186/683 (27%), Gaps = 46/683 (6%)

Query: 1   MRN---NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV 57
           MR+         L  ++  +G++ A         +D FP   P               + 
Sbjct: 1   MRHIIEWVLKSRLLIIVMMLGVMGAGYYSYRSLPVDAFPDVSPAL-----------VQVF 49

Query: 58  LEVDE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           +E +    + V  ++    +   + L        +     + + + F +          V
Sbjct: 50  VETEGLAPEEVEKYVTYPVETAMNGLPDLDHIRSTSNFGLSVVNVYFKEGTDIYFARQLV 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              LQ    ++     + ++   T     I+            A E            + 
Sbjct: 110 NERLQIAREEIPAGFGEPVMGPITTGLGQIIFYALEDATGERSAEEMREIQDWLVKFNLQ 169

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 + L     + Q      P  L +   +  ++       N++             
Sbjct: 170 TVPGVTEVLSIGGEVKQFQVRIRPMDLLRYDLSLHQVKEIIENNNSNTGAQFIVKNDEEY 229

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
              +  L     ++                      +     GA  + E   D +     
Sbjct: 230 IVRSVGLATKIDDLE-------------------KIVVKTVDGAPVYLEDLADVVIGGEI 270

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                 +         +       + N  I         ++                   
Sbjct: 271 RRGLVTMNGEGEAVVGMVLKLIGTNTNEVIAAVKSEMEAIQKVLPEGVTINPYYDQATLV 330

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
               S          GLVL+VL + +   +  +V   SI  +++    L+   G +  L 
Sbjct: 331 KAVVSTVTNALIQGIGLVLLVLLLFMGGIRGSIVVALSIPFSILFAFILMKQYGVSANLM 390

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKN---QSVFCSLDMGFSRAYSTIFDSNITALI 472
           S+ G+ + IG+ VD  I++ E +    R+     S    +    +     I  +    +I
Sbjct: 391 SLGGLAIAIGMMVDGTIVIVENVDRHLRERGSEASRIRIIADACTEVGRPIVFAISIIII 450

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-----KSID 524
             + LF      G   R  A  + L++L S+  A+ I   +   ++R  K      +   
Sbjct: 451 VFLPLFTLQGVEGTTFRPLAYAVALAMLGSLIFALLIAPVVSYLLMRSPKKALKDGEKPK 510

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            + + R  L+P    I+F            L  +     ++    +  +       L + 
Sbjct: 511 EHIVVRVLLVPYKPVIRFFVRFRAVAVALSLALLAIGAWIYPKLGSEFVPRLNEGDLLIR 570

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A+    +S+  +        +   +        + R+      + A       +   +  
Sbjct: 571 ASMSPSISLEMARDTMTVFENKLLERIPEVTEVVTRVGRGEIGAHADPVNSAEIFVSLKP 630

Query: 645 IVPLSTIQNTEIVGPKISRELIR 667
               +T  + + +  ++      
Sbjct: 631 RSEWTTASSLDELYAEMGEAFKD 653



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/207 (14%), Positives = 79/207 (38%), Gaps = 6/207 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +E ++K + E V ++   +   +   +   +    I G+ +  + +L+++    
Sbjct: 301 AAVKSEMEAIQKVLPEGVTINPYYDQATLVKAVVSTVTNALIQGIGLVLLVLLLFMG--- 357

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               ++    ++   I         +G+  NL ++  +   IG  V+  +V+ + + +++
Sbjct: 358 GIRGSIVVALSIPFSILFAFILMKQYGVSANLMSLGGLAIAIGMMVDGTIVIVENVDRHL 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +   +  S   +I  +  E     V+      I  LP+       G+     A  +A  +
Sbjct: 418 RERGSEASRIRIIADACTEVGRPIVFAISIIIIVFLPLFTLQGVEGTTFRPLAYAVALAM 477

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           + +   ++ IA  +   +     K  +
Sbjct: 478 LGSLIFALLIAPVVSYLLMRSPKKALK 504


>gi|325970857|ref|YP_004247048.1| acriflavin resistance protein [Spirochaeta sp. Buddy]
 gi|324026095|gb|ADY12854.1| acriflavin resistance protein [Spirochaeta sp. Buddy]
          Length = 1043

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 81/591 (13%), Positives = 190/591 (32%), Gaps = 41/591 (6%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +     L+            ++ + L FA     +  +  +   L 
Sbjct: 54  AGPEEVEQQVTKIIENTVGSLESLESITSQSSDGRSMVMLEFAYGTDLDEASSSLESLLS 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L    +   ++       S  +       +    ++Q  E        +   E  
Sbjct: 114 RVTRQLPSWAETPSVMRFDMSSSSTFMRLMLSGSLDEQTLKQLAE--DTISPLLLRVEGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q         Q+    DP RL     T +++     L N   K        +  S    
Sbjct: 172 SQVEVRGAGDTQIQVVIDPIRLEAYDLTLSEVKNALALRNVQGKVGTITQNLIDYSITLD 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
               D   I    +                                   + + L    + 
Sbjct: 232 ERFTDLTTIRETVVTTI--------------------DGVPIRIDDIGTVAESLETGFNE 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           + L    +     S  +  +      +  +  A++++        ++++ +      + S
Sbjct: 272 QYLDGSPVVTLSLSNASDSNAATVANSVQLQLAVIQSQLPDGIKLVIQQDSTTMISSTLS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +      L  +V+F+ +   K  L+   S+ +++  TL ++SL+G T+   S++G+
Sbjct: 332 EVYKSAIQGVVLAALVIFLFLRNIKATLIISLSMPISIFFTLMMMSLMGITINSMSMSGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +LGIG+ VD++I++ E   +      S   S  +G     + I  S +T +   + LF +
Sbjct: 392 ILGIGMIVDASIIILENTYKYREAKHSSAASAILGSQNMSTAILASTLTTICVFLPLFIY 451

Query: 481 G------GGAVRGFAITMGLSILISMFTAISIVRAMMIF-------------IIRYKKMK 521
                  G   +   +T+ +++  S+  A+++V A+                    + + 
Sbjct: 452 KNQLQMIGIMFQDLILTVCIALFASLLVALTLVPALSGSILRLDTRIQKPLKWKVLRYID 511

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              +   ++       +   F+R RF  + + +L  I S+      G+N          +
Sbjct: 512 DFYVRVEAKLEQAYAHVLSYFLRHRFLLIVLLVLLLIFSLQFFDGIGMNLTPQMNADDTV 571

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +    P   +   S  E  +I ++  +    E    + +Q    ++ +  
Sbjct: 572 TLSLTLPSGTTKEASREELFRIQELLMEELPSEAYSQIMVQVGTSNTGSIE 622



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 60/142 (42%), Gaps = 8/142 (5%)

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            F + A   L+L     +    +    F L +V  ++ LIG  VN+ +V+ D +    +L 
Sbjct: 888  FIIFATIPLLL--IGVIFIHIITDQAFTLFSVVGIVALIGVVVNNGIVLVDSIN---QLV 942

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +  ++    +    L   + T+    + ++P+A +   G  ++   A+    G+V A
Sbjct: 943  RQKMPVKEACLTAARTRLRPILMTTFTTVLGLVPLAFFPGEGAEMMQPIALTFIGGLVTA 1002

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
            +  ++F++  +       R K 
Sbjct: 1003 SFLTLFLSPSLYSLFNKRREKR 1024



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 83/202 (41%), Gaps = 14/202 (6%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            +    L +++ ++ + + L   Q++  +      E+ +  I GV+++A+ + +++    
Sbjct: 297 NSVQLQLAVIQSQLPDGIKLVIQQDSTTMISSTLSEVYKSAIQGVVLAALVIFLFL---R 353

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ + I  TL   +L GI  N  +++ ++  IG  V+  +++     +N 
Sbjct: 354 NIKATLIISLSMPISIFFTLMMMSLMGITINSMSMSGLILGIGMIVDASIIIL----ENT 409

Query: 749 KLYT--TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP---MAF 803
             Y      S    I  S N      + +++      LP+ ++    +    I    +  
Sbjct: 410 YKYREAKHSSAASAILGSQN-MSTAILASTLTTICVFLPLFIYKNQ-LQMIGIMFQDLIL 467

Query: 804 GIVVAASSSIFIAAPILLFIYD 825
            + +A  +S+ +A  ++  +  
Sbjct: 468 TVCIALFASLLVALTLVPALSG 489


>gi|299139846|ref|ZP_07033018.1| heavy metal efflux pump, CzcA family [Acidobacterium sp. MP5ACTX8]
 gi|298598200|gb|EFI54366.1| heavy metal efflux pump, CzcA family [Acidobacterium sp. MP5ACTX8]
          Length = 1062

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 79/666 (11%), Positives = 177/666 (26%), Gaps = 48/666 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +     ++   G+       L    LD  P       I          H   E +
Sbjct: 11  RNRFLVFACVLLLTFAGIWS-----LRHVPLDALPDISDVQVI---------VHTSWEGE 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +                         + + + F D         +V  +LQ 
Sbjct: 57  PPDVIEDQVTYPIVTSLLAAPHVKAVRAQTMFGDSYVYVVFEDGTDLYWARSRVVEYLQQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++ +L  D    +    T                     +            +       
Sbjct: 117 ISGRLPADVHPAIGPDATGAGWVFEY-AIVDKSGTHSLADLRSLQDWHLRYALETVPGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP++L       + +                             
Sbjct: 176 EVASIGGYVRQYQVRLDPNKLLAYNIPLSTVIDRVKAS-------------------TSE 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +    +++SG         +    +         + G              P        
Sbjct: 217 VGGRALDLSGAQYMIRGLGYLRSLNDLETVAVGSKNGTPVLLRDLGSVAFGPDIREGVAE 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I   +  ++    I+        +          +      G    S + 
Sbjct: 277 WNGDGETVGGIVVMRQGMNALNVIQGVKQKLREIAPSLPAGVQIVAGYDRAGLIQDSIAT 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +      A +V +V+ + + + +  L+A  ++ + V+++   +  LG +  + S+ G+ 
Sbjct: 337 LQRDLLEEAVIVSLVIIVFLFHFRSALIAIIALPIAVLVSFIPIYFLGVSANIMSLGGLA 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQ----------SVFCSLDMGFSRAYSTIFDSNITAL 471
           L IG+ VD+ I++ E       + Q               L     +    +F S +  +
Sbjct: 397 LAIGVLVDAAIVMVENGYRHLSERQQSDSTPISEPERREILINSAKQVGPALFFSLLIIV 456

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G   R  A T  L++  S   AI++V  +M+ +IR K          
Sbjct: 457 VSFLPVFLLEAQEGRMFRPLAWTKTLAVGSSSILAITLVPVLMVLLIRGKLRPENANPIS 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGIS-ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                +   I    ++ R   +G++ I                    F+G       A  
Sbjct: 517 RVTQALYLPILRFCLKYRKLTIGLNLIFLVATLPVAFKLGSQFMPPLFEGSALYMPTALP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + +   ++ L+       +F         + R      ++        ++ K   +  P
Sbjct: 577 GIAIEQAKTLLQKQDAILRTFPEVASVFGAVGRSDSATDNAPLDMYDTTIMLKPREQWRP 636

Query: 648 LSTIQN 653
             T + 
Sbjct: 637 GMTYEK 642



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 66/169 (39%), Gaps = 14/169 (8%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            VI+S + ++      F +  AL AI  L + +  +       G+  N+ ++  +   IG
Sbjct: 345 AVIVSLVIIV----FLFHFRSALIAIIALPIAVLVSFIPIYFLGVSANIMSLGGLALAIG 400

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISF-------RDLIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ +   +++     S S        R+++  S  +      ++ +   +S L
Sbjct: 401 VLVDAAIVMVENGYRHLSERQQSDSTPISEPERREILINSAKQVGPALFFSLLIIVVSFL 460

Query: 785 PMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           P+ +       +    A      +  ++  +I +   +++ +   + + 
Sbjct: 461 PVFLLEAQEGRMFRPLAWTKTLAVGSSSILAITLVPVLMVLLIRGKLRP 509



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 91/285 (31%), Gaps = 12/285 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               I + ++      +D    + +   +   + L  V     S     I  ++       
Sbjct: 763  RYPINVRYSQDFRDSVDRMRSVLIATPSGAQIPLGQVARISFSHGPAMIRDEDGQLTGYV 822

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             + L+        +    ++  +                   +  + L  K I+ ++   
Sbjct: 823  YIDLKDSNYGGFVEAATRKLHSQIALPASYGFKWSGEYEFELRAKQRL--KLILPIVFFL 880

Query: 678  IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            I +L+Y+        A+  I   I  +T  L    L G  F++      + L G +V   
Sbjct: 881  IFLLLYMVF-HSVAEAVVLIVPTIYAMTGGLLLQWLLGYNFSVAVWVGYIALFGIAVETG 939

Query: 738  VVVYDRMRKNMKLY------TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
            VV+   + + ++         T+        +     L   + T +A   S++P+     
Sbjct: 940  VVMVVYLHEALEHRLLQGTTLTNADIEAAAIEGAVHRLRPKLMTVIAVLASLVPILWESG 999

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G  V+   A P+  G++ +    + +     + + +   +   +
Sbjct: 1000 IGSDVMKPIAAPIVGGMITSTIHVLILVPVFFVMMKERALRKGHL 1044


>gi|127514462|ref|YP_001095659.1| CzcA family heavy metal efflux protein [Shewanella loihica PV-4]
 gi|126639757|gb|ABO25400.1| heavy metal efflux pump, CzcA family [Shewanella loihica PV-4]
          Length = 1047

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 70/590 (11%), Positives = 163/590 (27%), Gaps = 40/590 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L  +I  + + +     L ++ LD  P       I                     V   
Sbjct: 14  LMVLIIALMITVWGVQELRKTPLDALPDLSDVQVI---------IKTPYPGQAPKLVEEQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  V+S+L   
Sbjct: 65  VTYPLSTAMLAVPGAKTVRGYSFFGDSYVYVIFEDGTDIYWARSRVLEYLSQVSSRLPQG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            + +L    +                     +           ++       +      +
Sbjct: 125 LQPSLGPDASGVGWIYEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVSEVATVGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
                   +P +L       A +       N    G +  +         +   +   + 
Sbjct: 184 EQTYQIVIEPDKLAIYKLDIAAVKNAINKSNTEAGGSVIEMAEAEYMVRAKGYRQTLDDF 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I L   + +      K V  +       R   E+  +                   + 
Sbjct: 244 REIPLGVTSPSGTALLLKDVATVRKGPASRRGIAELDGE-----------------GEVV 286

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   +   +   TI+        L+AG       I           S           
Sbjct: 287 GGIIVMRYGENALATIDAVKAKLEQLKAGLPQGVEIIPTYDRSELINKSVDNLFHKVIEE 346

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI + IG  VD
Sbjct: 347 MLVVGLVCLLFLLHARSTLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIGAVVD 406

Query: 430 SNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDSNITALIATVVLF- 478
             I++ E + +     +            +  +          +F S +   ++ V +F 
Sbjct: 407 GAIVMIENMHKHLEHFKDEYRRDPDNKEHWHIVAKASIEVGPALFFSLLIITLSFVPVFA 466

Query: 479 --FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  +   +I++V  +M + IR K  K            +  
Sbjct: 467 LEAQEGRLFSPLAYTKTFAMAAAAILSITLVPILMGYFIRGKIPKETSNPISRVLIALYK 526

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +R     + ++++    +   +   G  +  + + G  L +   
Sbjct: 527 PALNMVLRFPKITLMLAVIALGSAWYPVTKMGSEFMPELEEGDLLYMPTA 576



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/247 (16%), Positives = 87/247 (35%), Gaps = 12/247 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             NL  ++I D +          +  +     ++     + E       ++        + 
Sbjct: 799  RNLADIEITDGAPMLKSENGRLISWVFVDIQNTSIGEYIDEAKSALDQQLKVPPRYSYSF 858

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                +  + +  K    + ++   + I + + F       +I  L L        + LF 
Sbjct: 859  AGQYEYMQRVDAKLKKVIPMALGVIFILLMMTFGSPLQ-ASIIMLSLPFALVGSTWLLFA 917

Query: 716  IEFNLTAVAAVLTLI--GYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINE 767
            ++FN++   AV  +   G +    VV+        + RK+   Y      ++ + +    
Sbjct: 918  LDFNMSVAVAVGMIALAGVAAEFGVVMLVYLNNAIKHRKDTGGYEYVADLKEALIEGAVM 977

Query: 768  TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +     T    F  +LP+      G  V+   A PM  G++ A   S+F+   + L IY
Sbjct: 978  RIRPKAMTVATIFFGLLPIMWGAGSGNDVMQKIAAPMVGGMITAPLLSLFVLPALYLLIY 1037

Query: 825  DWRAKNA 831
              R K++
Sbjct: 1038 GRRLKHS 1044



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/229 (15%), Positives = 78/229 (34%), Gaps = 15/229 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +  K    L  K I  
Sbjct: 287 GGIIVMRYGENALATIDAVKAKLEQLKAGLPQGVEIIPTYDRSELINKSVDNLFHKVIEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRM-------RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + M       +   +    +     ++ K+  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENMHKHLEHFKDEYRRDPDNKEHWHIVAKASIEVGPALFFSLLIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           P+          F   A    F +  AA  SI +   ++ +    +   
Sbjct: 463 PVFALEAQEGRLFSPLAYTKTFAMAAAAILSITLVPILMGYFIRGKIPK 511


>gi|313674660|ref|YP_004052656.1| acriflavin resistance protein [Marivirga tractuosa DSM 4126]
 gi|312941358|gb|ADR20548.1| acriflavin resistance protein [Marivirga tractuosa DSM 4126]
          Length = 1134

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 72/665 (10%), Positives = 183/665 (27%), Gaps = 42/665 (6%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           + +L  +I  +G+             + FP       I +G    G        +    +
Sbjct: 26  VYVLAFLIVVLGIFS-----YINLPKENFPEIAQPT-IYIGTPHPG--------NSPADM 71

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    ++  + +        +  Q  + I + F      E    +V   +    S+L
Sbjct: 72  EKLITRPLEKEINTISSVDNIKSTSVQDFSTIIVEFTTDTDVEEALQEVKDAVDQAKSEL 131

Query: 127 NVDPK-KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
             D +    +      E  I+    + +  +      +        +++       +   
Sbjct: 132 PSDLQDDPNVFELNVSEFPIMNINLSGNYSVETLNSYAEY----LEEEMEKFPEMSKAEI 187

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
                 ++    DP  +     +   +                              +  
Sbjct: 188 RGVDEKEVRIMVDPLEMEARKISFNDIETAV--------------------QQENMTMSG 227

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
                G      + + +    + + ++      A   +      I            L  
Sbjct: 228 GNIKMGKIRRTVSISGEYDNPEQLENLIIKNENANIVYLKDIAEIEFDYKEKQSYARLNN 287

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
             +       ++  +     E    +    +    P  L +    +              
Sbjct: 288 EAVVMVDAVKRSGENLLILTEKINEVIEKAKQEVFPDGLEVTITNDQSQQTRDQVSSLEN 347

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
             I   ++++++ +  L  +  L    +I +++ +   +L  LG T+ +  +  +++ +G
Sbjct: 348 NIISGVILVVLVLLFFLGTRNALFVGIAIPMSIFMAFMILGALGITINMIVLFSLIMALG 407

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---G 482
           + VD+ I+V E +     +  S   +  +G       I  S  T L A + L F+    G
Sbjct: 408 MLVDNGIVVVENVYRLMEEGYSPIKATKIGVGEVALPIISSTATTLAAFLPLAFWPGLIG 467

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
             ++   IT+ +++  S+F A+ I    +   +R  +   ++   + R   I   I   F
Sbjct: 468 EFMKYLPITLIITLGSSLFVALVINPVFIASFMRIDEGGRLNYKRVWRIAGISFAIGAIF 527

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           +  + + +G   +       +           F+ G    V       L+          
Sbjct: 528 ILLKVYALGNLAILFGALGLINTYILTPLSRKFQRGFLPAVEGLYSRTLAFAIKGRNPYL 587

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
               +     G    L                   V  +      +           K  
Sbjct: 588 FLGGTVVALFGSVMLLGVFTPNVLFFPENEPKYVNVFVEFPVGTDVEHTNEFSTKIEKEV 647

Query: 663 RELIR 667
           +++I 
Sbjct: 648 QKVIE 652



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/269 (11%), Positives = 89/269 (33%), Gaps = 36/269 (13%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             S +  ++           E + +V +     D    T V   +K  + +    +  +  
Sbjct: 863  ISAVADVEYTSTYGSINRKELDRVVTVYSNILDGYNATNVNNQLKAAMKDFEVPAGYEIK 922

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                 +   E +    + ++++   + + I  +F +       ++++I            
Sbjct: 923  FTGEQEEQAEELEFLSIALLLAVFLIFLIIVAQFNRLTAPFIIMSSVIFSTIGVFLGLVA 982

Query: 714  FGIEFNL-TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----------LI 761
            F ++F +   +  +++L G  VN+ +V+ D +   +      ++  +            +
Sbjct: 983  FQMDFVIVMTMIGIISLAGIVVNNAIVLIDFI--EISKANKKLNLEEGESLTYEMVKEAV 1040

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV------------------WGGSVI---GSFAIP 800
              +    L   + T++   + ++P+A+                   GG  +         
Sbjct: 1041 MLAGKTRLRPVLLTAITTILGLIPLAIGFNFDFIQLFTSYNPDFYLGGDSVMFWEPICWT 1100

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + FG+  A   ++ I   + L      AK
Sbjct: 1101 IIFGLTFATFLTLVIVPVMYLIANQLNAK 1129



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 52/124 (41%), Gaps = 4/124 (3%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           AL     + + I          GI  N+  + +++  +G  V++ +VV + +    +L  
Sbjct: 369 ALFVGIAIPMSIFMAFMILGALGITINMIVLFSLIMALGMLVDNGIVVVENV---YRLME 425

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              S        + E     + ++     + LP+A W G +IG F   +   +++   SS
Sbjct: 426 EGYSPIKATKIGVGEVALPIISSTATTLAAFLPLAFWPG-LIGEFMKYLPITLIITLGSS 484

Query: 813 IFIA 816
           +F+A
Sbjct: 485 LFVA 488


>gi|293413872|ref|ZP_06656521.1| cation efflux system protein cusA [Escherichia coli B185]
 gi|291433930|gb|EFF06903.1| cation efflux system protein cusA [Escherichia coli B185]
          Length = 1047

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKIQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHRPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 91/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +    L  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEVLLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|253687653|ref|YP_003016843.1| heavy metal efflux pump, CzcA family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251754231|gb|ACT12307.1| heavy metal efflux pump, CzcA family [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 1045

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/550 (11%), Positives = 141/550 (25%), Gaps = 49/550 (8%)

Query: 3   NNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           NN  LV+L    +   GL+      L ++ LD  P       I           +     
Sbjct: 11  NNRLLVLLAALFMAAWGLIS-----LQKTPLDALPDLSDVQVI---------IRVSYPGK 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +                + + F D         +V  +L  
Sbjct: 57  APQVVENQVTYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFEDGTDPYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  + K  L    T                     +           ++       
Sbjct: 117 VQSSLPAEAKTALGPDATGVGWIYEY-ALVDRSGKYSLADLRGFQDWLLKYELKTVPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     DP R+R    T  ++       N    G +  +           
Sbjct: 176 EVASVGGMVKQYQIVVDPERMRTQGITHQQIVSAVQAANQENGGSVLELGEAEYMVRTTG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                       +     G     +        P        
Sbjct: 236 YLKTAQD-------------------FNHVVITTRNGIPVLLQDVATLREGPEMRRGIAE 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +   T+         ++         +           +   
Sbjct: 277 LNGEGEVAGGIIVLRYGKNALNTLHAVKARLQEIQKSLPVGVEIVPTYDRSQLIEHAIDT 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V ++  + + + +  LVA  S+ L ++    ++   G    + S+ GI 
Sbjct: 337 LSFKLLEEFVVVAVICALFLFHFRSALVAIISLPLGILGAFIIMRYQGVNANIMSLGGIA 396

Query: 422 LGIGLAVDSNILVNERIRE-----------ENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + IG  VD+ I++ E + +           +  +N   +   +         +F S +  
Sbjct: 397 IAIGAMVDAAIVMIENMHKVIEQWRHENPGKQPQNNEWWQLAERAAVEVGPALFCSLLII 456

Query: 471 LIATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ V +F      G      A T   ++ ++    I++V  +M + +R K         
Sbjct: 457 TLSFVPVFSLEAQEGRMFSPLAFTKTYAMAVAAGLGITLVPVLMGYFVRGKIPDEQANPI 516

Query: 528 LSRFFLIPDC 537
                 +   
Sbjct: 517 NRWLIALYHP 526



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 78/259 (30%), Gaps = 20/259 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       V L+ +     S     +  +N        V L+ +   S  +     + +
Sbjct: 786  PIVTANGSRVTLAELADIHVSEGPPMLKSENSRLSDWIYVDLRGRDLKSAVEDMQQAVAQ 845

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            +         +                 K  V V  + + + + +++ F +   AL  + 
Sbjct: 846  QVTLPEGVSLSWSGQFEYL----ERATEKMKVVVPFTLLIIFVLLYVTFNRIKDALLIMA 901

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---------DRMRKNMK 749
            TL   +   +    + G   ++      + L G S    V++           R+     
Sbjct: 902  TLPFALIGGVWLLYILGYNLSVAGAVGFIALAGVSAEFGVIMLLYLNHAVEKHRV---AG 958

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
               +     D I +     +   + T       +LP+      G  ++   A PM  G+V
Sbjct: 959  QALSRQQLMDAIHEGAVLRVRPKMMTVATIMAGLLPIMWGGGSGSEIMQRIAAPMIGGMV 1018

Query: 807  VAASSSIFIAAPILLFIYD 825
             A   S+ +     L ++ 
Sbjct: 1019 SAPLLSMLVIPAFYLLLHK 1037



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/169 (16%), Positives = 61/169 (36%), Gaps = 15/169 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+++ I  L      F +  AL AI +L L I          G+  N+ ++  +   IG 
Sbjct: 346 VVVAVICAL----FLFHFRSALVAIISLPLGILGAFIIMRYQGVNANIMSLGGIAIAIGA 401

Query: 733 SVNDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVL 784
            V+  +V+ + M    +  +        +      L +++  E       + +   +S +
Sbjct: 402 MVDAAIVMIENMHKVIEQWRHENPGKQPQNNEWWQLAERAAVEVGPALFCSLLIITLSFV 461

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           P+          F   A    + + VAA   I +   ++ +    +  +
Sbjct: 462 PVFSLEAQEGRMFSPLAFTKTYAMAVAAGLGITLVPVLMGYFVRGKIPD 510


>gi|332664787|ref|YP_004447575.1| acriflavin resistance protein [Haliscomenobacter hydrossis DSM
           1100]
 gi|332333601|gb|AEE50702.1| acriflavin resistance protein [Haliscomenobacter hydrossis DSM
           1100]
          Length = 1009

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 80/684 (11%), Positives = 191/684 (27%), Gaps = 53/684 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    +++ + ++C  GL+      L    +   P                   +V++V
Sbjct: 6   LQRPIAVLLSFIVLCIFGLIA-----LNLLPISLLPDVDVP-------------QIVVKV 47

Query: 61  DED----DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                  + +   +     E  + +             +  I L+F  +   +    +V 
Sbjct: 48  SYPNTAAEALEARIIRPLRETLTGIPGLKDIESRSSNHRGIIYLAFEYNTKMDLAYIEVN 107

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  ++++   D  +         +I IV  Q    ++    ++ S  + +    ++  
Sbjct: 108 ERIDRLSAQFPRDMPRPQTTRINTSDIPIVRLQVT-PKIQEDFVQISDLVDKLIKRRLEQ 166

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E       +      +  E     L+ L  +   ++                       
Sbjct: 167 LEGISIVDINGLQQTNIAIEPHREVLQALHVSENDLAQTIQA------------------ 208

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                         G +      +   ++   +  +                 I      
Sbjct: 209 --ANLDFGGLSVRDGNYQYFVKVSNGFESIADIGRLPVPTTSGLSVPLAKLATIRSIAEP 266

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +             +A    N  +     L               + +       
Sbjct: 267 PSGYHLFNGQPALGITIQKQAASRMNELVPRIQNLVKQFEKDYPQANF-ALTQDQTYLLN 325

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
              +           L ++VLF+ +       +   +I +++I+T AL  +LG +L + S
Sbjct: 326 AGINNLYQDLMYGGILAVLVLFLFLGNYASSGLMSLNIPISLIITFALFYVLGISLNIIS 385

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           ++G+ LGIG+ +D++I+V + I  + R+  ++  S + G S   + +    +T +     
Sbjct: 386 LSGLALGIGMLIDNSIIVLDSITRKRREGMAMLASCERGISEVVTPVLSQVLTTVAVYAP 445

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           L       G  V   AI + +S+ +S+  A  +   +    +  K     +      + L
Sbjct: 446 LILLPGLAGLLVYDQAIALTISLGVSLVVAFILSPLLYKLFLGNKPQSIKEDTRFYLWIL 505

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLF--THGLNYGIDFKGGIQLGVLANRPVDL 591
                 IQF+  R                 LF      N     K    + +    P+ +
Sbjct: 506 AGYHRMIQFIFQRKILFFSITCLFGLLAFWLFPKIPIANLPKVEKRETLVKIDWQTPLSV 565

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL----EMVKKKITEIVP 647
                 ++ L     S       +  + +      D   Q   +    +   +K +    
Sbjct: 566 EENVQRVQKLDRVLASSAVSREAEVGIPQFLLASADQSIQQAQVYYACKNQSEKESLDQK 625

Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671
                     G     E       
Sbjct: 626 AKAWLQKTYPGASFQFEDASNAFT 649



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/133 (15%), Positives = 55/133 (41%), Gaps = 7/133 (5%)

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +  T   F + GI  N+ +++ +   IG  +++ ++V D +    +     ++     
Sbjct: 365 ISLIITFALFYVLGISLNIISLSGLALGIGMLIDNSIIVLDSI---TRKRREGMAMLASC 421

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAP 818
           ++ I+E +   +   +       P+ +  G     +   AI +   + V+   + FI +P
Sbjct: 422 ERGISEVVTPVLSQVLTTVAVYAPLILLPGLAGLLVYDQAIALTISLGVSLVVA-FILSP 480

Query: 819 ILLFIYDWRAKNA 831
           +L  ++      +
Sbjct: 481 LLYKLFLGNKPQS 493



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 58/148 (39%), Gaps = 11/148 (7%)

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
                L  + T+ L +T  L    L     ++ A    + ++G  V+D ++  + + + +K
Sbjct: 864  LIQPLLVMLTIPLGVTGALLLLYLQQGALDIMAAIGFVVVLGIIVDDPILKVEVINRLLK 923

Query: 750  LYT-----TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPM 801
            LY         +    I  + + +L   + TS+   ++++P+      G  +       +
Sbjct: 924  LYESSGMSRRQALEKAIHDAGDISLKPLLMTSLTTSLALVPVLFTPGIGSDLQKPMVFVI 983

Query: 802  AFGIVVAA-SSSIFIAAPILLFIYDWRA 828
              G+ +    ++ FI  P+  +    + 
Sbjct: 984  IGGLTIGTFFTTWFI--PLAYWFITKKK 1009


>gi|325498231|gb|EGC96090.1| copper/silver efflux system, membrane component [Escherichia
           fergusonii ECD227]
          Length = 1047

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAMVCALFLWHVRSALVAIISLPLGLCIAFIIMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L ++            + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYSQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +          ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMDFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLDNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|168334752|ref|ZP_02692880.1| putative multidrug efflux pump, membrane protein [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 1192

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 69/590 (11%), Positives = 172/590 (29%), Gaps = 40/590 (6%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
            +   I L I   + L    +   P       I            V      D +   + 
Sbjct: 15  VLTVLITLFIFAFDTLTSFKMASMPQMEMPMFI---------LQTVYVGANPDTIEKLVT 65

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
               E+   ++         +   + +   F      +     +   +  V   L  D  
Sbjct: 66  EPLSEVGQLVEGFDYETTISQANLSMVIFYFDYGTDMDKAYTDLQQEIDLV--ALPEDAM 123

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             +L+  +    +IV    +         + +  I    + ++       +         
Sbjct: 124 DPVLIQMSMDSSTIVQLSVSSTIGD----DITSFINDTLVPELETLTGVAEVEVYGVNPG 179

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
            +  + D   + Q   + ++++                        G ++ +       G
Sbjct: 180 YISIQADEIAMDQYGISMSQVNNAIA--------------------GAKFTIPAGEIEQG 219

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
             +   +A  +  +   + +                 ++      +              
Sbjct: 220 TQIISVSAIGELTSLPEIANAPIVTASGNTIIVDDVADVKYLQQKMDTASRYNGTDNLSI 279

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
             +G          ET   L   +   +  IK++++      + +        T  I   
Sbjct: 280 TVTGTQDADVPAVAETILALCDEIVKDNPTIKVDVMS-NEGQSIVDIIMSVAETLLIGIA 338

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
             ++VLF+     K  L+   SI L++++ L  + + G  L   +   +++ IG+ VDS+
Sbjct: 339 CCMLVLFIFFGDIKASLIVGSSIPLSLMMALIAMGVSGFELNSITGIALIIAIGMIVDSS 398

Query: 432 ILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGF 488
           I+V E +    R + S   +   G     +++  S IT ++  + L       G      
Sbjct: 399 IVVLESMFLAKRGDISYVDAAISGTKTVGASLVASTITTIVVYLPLAMMEGLSGQMFSQL 458

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFW 548
             T+  +++ S+ +A+++V    + +   ++ K      +     I +     F+R +  
Sbjct: 459 GYTIVYNMIASIISAVTLVPLAFVLLKPRERKKLPINLVIKFLITIYEWFVRHFVRWKLP 518

Query: 549 GVGISILFSICS-ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
            V  +IL    +                 G   +         + ++   
Sbjct: 519 AVINTILIVAATGFIATLVRMEMMPTIDSGYFSVTAEFRPGTKMEIISEE 568



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 27/218 (12%), Positives = 82/218 (37%), Gaps = 9/218 (4%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
             +          T  +  V  +       S +  T+     +  EL+  G   +++   
Sbjct: 783 YNIXLTAIFDQTYTEKINTVIDEFLTEDLGSGVSMTDANMDDMIAELMALG-QAILVGTF 841

Query: 679 AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            +   + I+F+ + F++  + +L            +     ++T++   L L+G +VN+ 
Sbjct: 842 LVFAVMAIQFESFRFSIMVMMSLAFGGIGAFSLLFIVDEAVSMTSLMGFLMLVGLAVNNG 901

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VI 794
           ++  D     +      +   D + ++    +   + T++   +S+LP+ +  G    ++
Sbjct: 902 ILYVD----TVSQLKQEMDLIDALVEAGKSRIRPILMTTLTTILSMLPILLDDGEASMML 957

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + A+ +  G++ +    + +     L +     +  +
Sbjct: 958 KAMALVIIGGLISSTVLILVLMPTFYLILDKKEKRGKK 995



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 83/254 (32%), Gaps = 6/254 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +   +   + +  V       Q  D + +    +   +     Q  D  A    +  + 
Sbjct: 241 PIVTASGNTIIVDDVADVKYLQQKMDTASRYNGTDNLSITVTGTQDADVPAVAETILALC 300

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +I +  P   +      G  I   ++      +I  A  ML+          +L   ++
Sbjct: 301 DEIVKDNPTIKVDVMSNEGQSIVDIIMSVAETLLIGIACCMLVLFIFFGDIKASLIVGSS 360

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + L +   L    + G E N     A++  IG  V+  +VV + M          IS+ D
Sbjct: 361 IPLSLMMALIAMGVSGFELNSITGIALIIAIGMIVDSSIVVLESM---FLAKRGDISYVD 417

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                        V +++   +  LP+A+     G +       + + ++ +  S++ + 
Sbjct: 418 AAISGTKTVGASLVASTITTIVVYLPLAMMEGLSGQMFSQLGYTIVYNMIASIISAVTLV 477

Query: 817 APILLFIYDWRAKN 830
               + +     K 
Sbjct: 478 PLAFVLLKPRERKK 491


>gi|225850407|ref|YP_002730641.1| cation efflux system protein CusA [Persephonella marina EX-H1]
 gi|225645992|gb|ACO04178.1| cation efflux system protein CusA [Persephonella marina EX-H1]
          Length = 1045

 Score =  127 bits (319), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 71/682 (10%), Positives = 184/682 (26%), Gaps = 49/682 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +V L  ++    +       L  + LD  P   P   I          +   +  
Sbjct: 11  RNKLIVVSLSLIVLGASIWA-----LKNTPLDAIPDLSPPQVI---------VYTKWQGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +            +            + + + F +         +V  +L  
Sbjct: 57  SPSVVEDQITYPVVSTLLSAPEIETVRGISSFETSAVYVIFKEGTDIYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +  KL    +  L    T        +  +      +  +            +   +   
Sbjct: 117 IKDKLPKTAEVTLGPDATGVGWVYQYALYSDK---RNLWQLRTLQDWYLKYTLLGVDGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +       +P +LR    +  ++     + NN   G +              
Sbjct: 174 EVASIGGFVKGYQITLNPQKLRAYDISLKQVISSLKMNNNDTGGRIIESNGFEFIIQGIG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +I                    + +     G     +        P+       
Sbjct: 234 YIKTLDDIK------------------DITVKITPNGIPVRIKDIARVELVPMNRRGMAD 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    I+        ++         I           + + 
Sbjct: 276 LNGLGEVVGGIVVMRFGENAYQVIQRVKEKIKEIKENLPEDIKIITTYDRSQLIEKAVNT 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T    + +VLIV+ + + + +  LV   ++ L VI     +     T  + S+ GI 
Sbjct: 336 LKRTLIEESIIVLIVIGIFLFHFRSSLVIIITLPLAVITGFLFMKFFNITSNIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREE---------NRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
           + IG  VD+ I++ E   +             ++    ++     +    IF + +  ++
Sbjct: 396 IAIGAMVDAAIVMVENAHKHLEKLRKEKGEYTDRERIEAIVKAAKQVGRPIFFALLLIVV 455

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + + +F      G   +  A T   ++L +   A+++V  +M+++I+ + +         
Sbjct: 456 SFLPVFALSGQEGMLFKPLAFTKTFTMLAASVFAVTLVPILMVWLIKGRIVSEEKNPVNW 515

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               I   I    ++ R+  + ++++       +       +         + +      
Sbjct: 516 ILIKIYSPIIKLTLKVRYLVIILAVVAIGMVYPIYKKLSWEFMPMLNEQTFMYMPVTPYG 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                   L  L   D    +F        +       +      +              
Sbjct: 576 ISITQARELTQL--TDKILASFPEVDTVFGKAGRAETATDPAPLSMIETIITFKPKEYWR 633

Query: 650 TIQNTEIVGPKISRELIRKGIV 671
                + +  ++  +L   G+ 
Sbjct: 634 EGVTFQSLMQEMEEKLQVPGLT 655



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 81/205 (39%), Gaps = 12/205 (5%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              ++ +K+ + E + + T  +   +  K    L R  I   II  I + I++   F + 
Sbjct: 303 KEKIKEIKENLPEDIKIITTYDRSQLIEKAVNTLKRTLIEESIIVLIVIGIFL---FHFR 359

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            +L  I TL L +     F   F I  N+ ++  +   IG  V+  +V+ +   K+++  
Sbjct: 360 SSLVIIITLPLAVITGFLFMKFFNITSNIMSLGGIAIAIGAMVDAAIVMVENAHKHLEKL 419

Query: 752 TTS------ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMA 802
                        + I K+  +      +  +   +S LP+    G    +    A    
Sbjct: 420 RKEKGEYTDRERIEAIVKAAKQVGRPIFFALLLIVVSFLPVFALSGQEGMLFKPLAFTKT 479

Query: 803 FGIVVAASSSIFIAAPILLFIYDWR 827
           F ++ A+  ++ +   +++++   R
Sbjct: 480 FTMLAASVFAVTLVPILMVWLIKGR 504



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 86/248 (34%), Gaps = 10/248 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +  +   +        +   +V +   P  +V     +E  KK +++I          
Sbjct: 795  KAVADVYYDEAPSVIKSEKGMKVVFVYITPHQNVTPEEYVEKAKKVLSQIKLPQGFFIEW 854

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +       + +  + ++   + + ++  F+     L  + ++   +   L +    
Sbjct: 855  AGQSQYLEHAKERLMYIIPLTVAIIFLLVYFTFRSIKNTLIILLSIPFALLGGLWYIDYL 914

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVY----DRMRKNMKLYTT--SISFRDLIDKSINET 768
                ++  V   L L+G +    +V+     + ++  +K + T     F D I +     
Sbjct: 915  NFNMSIAVVVGFLALLGVAAETAIVMIIYLEEAVKSRLKQFKTITEKQFYDAIYEGAVLR 974

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   + T  A    +LP+      G  V+   A PM  G+V +A  ++ I   I      
Sbjct: 975  IRPKMMTVSAILAGLLPIMYITGVGSEVMQRIAAPMIGGVVSSAILTLVIIPAIYTVTKK 1034

Query: 826  WRAKNARI 833
            +  K  ++
Sbjct: 1035 YELKRNKL 1042


>gi|114048725|ref|YP_739275.1| acriflavin resistance protein [Shewanella sp. MR-7]
 gi|113890167|gb|ABI44218.1| acriflavin resistance protein [Shewanella sp. MR-7]
          Length = 1067

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 75/674 (11%), Positives = 180/674 (26%), Gaps = 45/674 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+    +L   +   GL            +       P   ++L   L     +     
Sbjct: 13  RNSVAANLLMWALLIGGLFS---------TVLINKEVFPSFNLNL---LS--ITVAYPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   + +  +E    +           +    IT+   D    + + D+  L L  
Sbjct: 59  APQEIEEGINIKIEEAIQDINGIKKVTSVASEGVGSITVEVEDDYDVQTVLDEAKLRLDA 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S   V+ +K  +    E E +++      D  +    E +    +   D +    +  
Sbjct: 119 I-STFPVNIEKPQIYKI-EPENNVIWVSVYGDMSLHDMKELA----KSVRDDLTQLPAVT 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++  E    +LR+   T ++++      +    G           DG+  
Sbjct: 173 RAKVTGVRDYEIGIEVSEDKLREYGLTFSQVALAVQNSSIDLPGGSIRAE-----DGDIL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L       +G                    +        R        I       L+  
Sbjct: 228 LRTKGQAYTGDD--------------FANIVVTTRADGSRVMLPQVATIKDDFEERLEYT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +     +         RA                   G  ++
Sbjct: 274 RFNGKPAAIIEVTSVNDQNALDIAQQVKDYVEKRRATLPANAKLDTWGDLTHYLKGRLNM 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL--LGATLTLPSIAG 419
                   A LV ++L + +   K        + +  + T+ ++ L     T+ + ++  
Sbjct: 334 MMSNMFYGALLVFVILALFL-DLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFA 392

Query: 420 IVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +L +G+ VD  I++ E    E  R   S+   +      A    F    T      +L 
Sbjct: 393 FILVLGIVVDDAIVIGESAYSEVERHGHSIDNVIRGAQKVAMPATFGVLTTIAAFIPMLM 452

Query: 479 FFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   +  +   + + + +  S+  +  I+ A +  +   K  +        +      
Sbjct: 453 VSGPMGIIWKSIGMVVIMCLAFSLVESKFILPAHLAHMKFRKPGEPTGFFGRFKDRFNNR 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R +               +    L+  +   G ++     + P D   V+ 
Sbjct: 513 VQHFIHHSYRNFLERCIQHRYNVVAAFIGVLILSVALVVSGKVRWVFFPDIPSDFIQVQL 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       + +     +  L ++  +         V        +        + T+ 
Sbjct: 573 EMDEGSSEQNTLKVVQDIEEALYKMNAKMEKDNGSEVVKHSFINMSSRTSAFIFAELTKG 632

Query: 657 VGPKISRELIRKGI 670
              ++  E I    
Sbjct: 633 EDREVDGETIAAAW 646



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 90/256 (35%), Gaps = 10/256 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +   +   +               S    DG++   +              V E+ K  +
Sbjct: 779  IRTPQGKSVPFSTVAEVEKGESYASITRVDGKRAITIIANANKHKVEPSKVVNEIQKDFL 838

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             ++        T + G  +  +    G++ G   +   +   + +  K  ++   I   +
Sbjct: 839  PQLQAKYPKIQTTLDGGSLDEQNAMVGLMQGFFFALFTIYALMAVPLK-SYSQPLIIMSV 897

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +        F     G+  ++ ++  ++ L G  VND +++ D +    +     +S + 
Sbjct: 898  IPFGIIGALFGHLIQGLAMSVLSLCGIVALAGVVVNDSLILVDFVN---RAREQGLSIKQ 954

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                S        + TS+  F+ ++P+ +       ++   A  +AFGI+ +   ++ + 
Sbjct: 955  AAVDSGCYRFRAIILTSLTTFVGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILV 1014

Query: 817  APILLFIYDWRAKNAR 832
              + + + D +   +R
Sbjct: 1015 PLLYIILDDVKRTASR 1030



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 91/280 (32%), Gaps = 8/280 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI      I L        G DF   +         V L  V +  +  +      +   
Sbjct: 218 SIRAEDGDILLRTKGQAYTGDDFANIVVTTRADGSRVMLPQVATIKDDFEERLEYTRFNG 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +        +++   + ++   +K    +P +   +T        +  +   +  
Sbjct: 278 KPAAIIEVTSVNDQNALDIAQQVKDYVEKRRATLPANAKLDTWGDLTHYLKGRLNMMMSN 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
           +   A+ + + + +      A   +  L +    T+    L  F +  N+  + A + ++
Sbjct: 338 MFYGALLVFVILALFLDLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFAFILVL 397

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ +     ++      S  ++I  +    +  +    +    + +PM +  
Sbjct: 398 GIVVDDAIVIGESAYSEVE--RHGHSIDNVIRGAQKVAMPATFG-VLTTIAAFIPMLMVS 454

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G +     S  + +   +  +   S FI    L  +   +
Sbjct: 455 GPMGIIWKSIGMVVIMCLAFSLVESKFILPAHLAHMKFRK 494


>gi|258515166|ref|YP_003191388.1| acriflavin resistance protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257778871|gb|ACV62765.1| acriflavin resistance protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 1020

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/548 (11%), Positives = 154/548 (28%), Gaps = 41/548 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     ++ + M   +G++  +   +P+    +    M +               V   
Sbjct: 8   LKYRKITLMFFIMAVILGIISFI--NMPRFEDPQIKVFMAQ------------VQTVYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    LK+      S     + I +  A    ++   D +   + 
Sbjct: 54  ASPEQVEALVTKPLEEKIDELKEVSKITSSSANGFSNIMVEIAPESDQKKAWDNMRQKVN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L     +  +     K   +++       +   +I    EI     D I      
Sbjct: 114 EARLLLPSGAGEPEVNDEVNKTSCLIIHLIPPANLPVASI---REIADDWKDSIKQVPGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +         Q+    DPS L     +   ++                         N 
Sbjct: 171 EKIEVMGLPEQQVQIILDPSALAARRLSWTHLADALQK-------------------RNV 211

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +    +           +       +    I +  +G          ++    A     
Sbjct: 212 SIPGGTLREGETGFMVEPSGEYSNLEEIKDTIIYQPVGGTAVKVKDVASVKLVHARNDVL 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              +           K   +     E        ++                 +      
Sbjct: 272 VKSSDNSAVALAIFPKEGHTVFDVNEKVQAKIKEMKKDLPSGVEVQSVYDQSESVKKKFD 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                     G+VL++  + + + +  ++   +I ++V +    L+ +G  L   S+A +
Sbjct: 332 ELWRELLTGMGMVLLICVLGL-HWQTAVMTALAIPVSVAVGFGPLASMGVDLQQMSLAAL 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++ +G+ VD  I+VN+ I          + ++  G      +I  S I  +   + L   
Sbjct: 391 IIALGILVDDAIVVNDNIERHILLETDRYTAVLSGTREVAVSILTSTIATVAGFIPLILL 450

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G     +R   + + +++  SM  ++ +V  +M +    +  K+I      +   +   
Sbjct: 451 RGNIGEFIRSLPLVVAVTMSASMVVSLWLVP-IMRYWTAGRVKKNIREKAFGQSGPLGPF 509

Query: 538 IAIQFMRA 545
           +       
Sbjct: 510 LNRLSTWY 517



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 88/249 (35%), Gaps = 9/249 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               V+       +   +        N  V L   P +      V E V+ KI E+    
Sbjct: 251 TAVKVKDVASVKLVHARNDVLVKSSDNSAVALAIFPKEGHTVFDVNEKVQAKIKEMKKDL 310

Query: 650 TIQNTEIVGPKISRELIRK---GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                       S  + +K       ++     +L+   +   W  A+     + + +  
Sbjct: 311 PSGVEVQSVYDQSESVKKKFDELWRELLTGMGMVLLICVLGLHWQTAVMTALAIPVSVAV 370

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
             G  A  G++    ++AA++  +G  V+D +VV D + +++ L T   +    +     
Sbjct: 371 GFGPLASMGVDLQQMSLAALIIALGILVDDAIVVNDNIERHILLETDRYT---AVLSGTR 427

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E     + +++A     +P+ +  G     I S  + +A  +  +   S+++   +  + 
Sbjct: 428 EVAVSILTSTIATVAGFIPLILLRGNIGEFIRSLPLVVAVTMSASMVVSLWLVPIMRYWT 487

Query: 824 YDWRAKNAR 832
                KN R
Sbjct: 488 AGRVKKNIR 496



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 67/156 (42%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDI-TKTLGFFALFGIEFNLTAVAAVLTLIG 731
            I+  + + + I I+F         + ++ L I    LG + + G      A+  V++L G
Sbjct: 866  IVVLLLIYVIIAIQFYSLTKPAVILLSVFLAISGAVLGLY-VTGTPLGFMALLGVVSLSG 924

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
              V + +++ + +          +     I ++    L   + T+  A  ++LPMA+ GG
Sbjct: 925  IVVRNGIMLVEFI---EVGLKQELPLYGAILEAGKVRLRPILLTAATAVSALLPMAITGG 981

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            S+    A+ +  G++ +   ++ +   + L I   +
Sbjct: 982  SLWRPMAVSIISGLIFSTVLTLIVVPSVYLLITKRK 1017


>gi|323938432|gb|EGB34685.1| CzcA family protein heavy metal efflux pump [Escherichia coli
           E1520]
          Length = 1047

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMQFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAVPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|294085576|ref|YP_003552336.1| cation/multidrug efflux pump [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665151|gb|ADE40252.1| Cation/multidrug efflux pump [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 1042

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 66/594 (11%), Positives = 157/594 (26%), Gaps = 37/594 (6%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             ++    L     +       +  P                   +  +          L
Sbjct: 14  AVLLALFVLCGIGLSAFNDIPKEATPDIDIPVAY---------VSVGYKGISPSDAERLL 64

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               ++    ++   +      +    ++L FA +   +     V   +      L  D 
Sbjct: 65  IKPLEKHLRTVEGLDVMKSVAAEGYGSVSLEFAANENIDRALADVRQAVDDAKPDLPADA 124

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
            +  ++     +  I+ +           +       R+  DQI      ++        
Sbjct: 125 DEPKVIEINLSQFPILTAALYGPVSERAMV----LAAREIKDQIEALPGVLEVEIGGDRE 180

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
             L    D S +       + ++                        GN  LV       
Sbjct: 181 EVLEILVDASSMEAYGLDPSVVTRLV--------------------QGNNQLVTAGAIDD 220

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
           G            ++   ++++                 + +          +       
Sbjct: 221 GGGRLLVKVPGVLESVDELINMPIKARDGTSIKFGDVAVVRRTFEQAEGWSRVNGEAAIV 280

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                +   +    +E A  +                   +        S          
Sbjct: 281 LDVRKRVGANVINVVEAARAVIDTAAPMIGKDVKVSYLFDDSKDVRNLLSDLGNNVGAAV 340

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            +V++V+   +      LV   +I  + ++ + +L+ LG T+ +  +  ++L  G+ VD 
Sbjct: 341 IIVMVVVLATLGVRNATLV-GLAIPGSFLIGITVLNSLGITMNIVVLFSLILVAGMLVDG 399

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRG 487
            I+  E          +   +  +G  R    I  S +T L+  + L  +    G  ++ 
Sbjct: 400 VIVTTEFADRRIAMGATRREAYMVGAQRMAWPIISSTVTTLMVFMPLLVWPGIVGKFMKF 459

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
             IT+   +  S+  A+  +  +   I +    K I  +   RF+     +AI    A  
Sbjct: 460 LPITVICVLTASLVMALIFIPVLGSMIGKKSVPKGIISSTAPRFYRRVLKVAISRPLAVM 519

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
             V   ++F+             +        Q+ VLA   +      + +   
Sbjct: 520 GSVIGFMVFAFIGYGSAGLGVEFFPDIEPDQAQVQVLARGDLSAKERDALVVQA 573



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 90/299 (30%), Gaps = 22/299 (7%)

Query: 542  FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
             ++    G  IS      S   L       G          +         V  S   SL
Sbjct: 720  MIKMLTRGARISDYRPDDSEDELDVVMRFMGDQRNLDRLKELRVPAADGSYVPLSVFASL 779

Query: 602  QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
            Q           +    + +     + +        ++  ++E      +        + 
Sbjct: 780  QPRVKQGNIERLDGRRYMYINSDVSEGLLPAEQFAKLQTSLSETPLTQNVDIVYGGENED 839

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRF--KWYFALGAITTLILDITKTLGFFALFGIEFN 719
              E         ++S   M++ + ++F   W  A   ++ +IL     +    + G  F 
Sbjct: 840  IAETQAFLGKSFLLSMTLMVVVLMLQFNSGWQ-AFIIMSAIILSTGGVVLGLWVTGQPFG 898

Query: 720  LTAVA-AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
            +      V++L G  VN+ +V+ D   +  K        R    ++        V T++ 
Sbjct: 899  VVMSGLGVISLAGIVVNNNIVLIDTFNEYRK---RGYKARHAAFRAGLVRFRPVVLTAIT 955

Query: 779  AFISVLPMA-----------VWGGSV----IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              + +LPM            ++ G+         +  +A G+  A   ++     +L+ 
Sbjct: 956  TILGLLPMVFELTIKLADREIFVGAPSSQWWTQLSSTIAGGLTFATVLTLVATPAMLVL 1014


>gi|262195617|ref|YP_003266826.1| protein-export membrane protein SecD [Haliangium ochraceum DSM
           14365]
 gi|262078964|gb|ACY14933.1| protein-export membrane protein SecD [Haliangium ochraceum DSM
           14365]
          Length = 637

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 88/236 (37%), Gaps = 4/236 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L+         Q+        + +      ++       +   K   +       ++ ++
Sbjct: 404 LDETVNSAPVIQDAITGGRSTITMGGSSNAAIEAEADDLVSVLKTGSLPAPLQEDSSSVI 463

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  + I K      + A+ +LI +   ++      ++  L+L+I   +   A  G  
Sbjct: 464 GPLLGADAIEKAQFAFALGALLVLIIMVFIYRVS-GWLSMVALVLNIGFMMAILAALGAT 522

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +AA++  +G +V+  +++Y+R+R+ ++L     S R  +D   +          +
Sbjct: 523 LTLPGIAALVLTVGMAVDANIIIYERIREELRL---GKSVRGAVDAGFSRGFSAIFDGQI 579

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              ++   +  +G   I  FA+ +  GI     ++ +       +      K  ++
Sbjct: 580 TTAVAAYVLLQYGSGPIRGFAVMLIIGIGCTLFTATWCTRLFFEYYVGKGRKVEQL 635



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 64/525 (12%), Positives = 161/525 (30%), Gaps = 24/525 (4%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   W       +  + + + +P  +P   +  + + +   +I LGLDL+GG + V  +D
Sbjct: 3   RKIRWRTFWLGALVVLSISLLIPTLVPSESMPAWFNRVFSKKIQLGLDLQGGLYTVYSID 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ--NKITLSFADSRFKENIADKVTLFL 119
            D  V+        E  + + +  I        Q    I +   +   K  I        
Sbjct: 63  LDKAVDDKASEIKREFDAKMAERSIAGRVTTPRQPVGAINVILEEEAQKSAIDADFLSDY 122

Query: 120 QGV--NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +  N       +           + +++S    D +   A EQ++ IIR RI++ G++
Sbjct: 123 AEILENRDCPEGLE--------ATSVCLLVSPEYADGIRKSAQEQALIIIRDRINKRGVA 174

Query: 178 ES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           E     +     + +    E++  R++ L+G TAK+ F  V  N+     ++        
Sbjct: 175 EPSVKSKGNQIVVELPGLDEEEIERVKDLIGRTAKLEFKMVAENSEYMRELYQHVSEDAK 234

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                +       S         ++          +   E   R  +   +  +   +  
Sbjct: 235 AKELGIDVGVDFWSHDESGKQYQDYYLSAGDVDEWLPVAEAKERGCWNANKSEVQGEVQC 294

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAML----RAGSLPIKLNIVEERNV 352
            + GR   A  +++   +       +       ++        +      +   +     
Sbjct: 295 TITGRQRIADYLDELFVADAEMAIDDEHQIGYQLVNPESVMRDQEREAYWRTYYLNRPVE 354

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
            +       YK          ++++F      ++G +   +I   + + L         +
Sbjct: 355 LSGSSIADAYKYWDPTTNRPSVLIVFNRYGGRRFGDMTSVNIGKKMAIILDETVNSAPVI 414

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS-------TIFD 465
                 G          +  +  E     +        +     S +          I  
Sbjct: 415 QDAITGGRSTITMGGSSNAAIEAEADDLVSVLKTGSLPAPLQEDSSSVIGPLLGADAIEK 474

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +     +  +++        R       +++++++   ++I+ A+
Sbjct: 475 AQFAFALGALLVLIIMVFIYRVSGWLSMVALVLNIGFMMAILAAL 519


>gi|225872843|ref|YP_002754300.1| heavy metal efflux RND transporter CusA [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791573|gb|ACO31663.1| heavy metal efflux RND transporter CusA [Acidobacterium capsulatum
           ATCC 51196]
          Length = 1055

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 70/569 (12%), Positives = 160/569 (28%), Gaps = 48/569 (8%)

Query: 3   NNPWLVIL-YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            N +LV     ++   G+       L    +D  P       I          H     +
Sbjct: 11  RNRFLVFTGVLLLTLAGIWS-----LQHVPVDALPDISDVQVI---------VHTSWPGE 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +                         + + + F D         +V  +LQ 
Sbjct: 57  PPGLIEDQVTYPIVTAMLSAPHVKAVRAQSMFGDSYVYIVFKDGTNLYWARSRVLEYLQE 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L       L    T                     +            +       
Sbjct: 117 IASQLPSSVHPVLGPDATGAGWVYEY-ALVDKTHRYSLADLRTLQDWNLRYALETVPGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q   + DP++L       +K+                             
Sbjct: 176 EVATIGGYVKQYQVQLDPNKLLAYGIPLSKVIDRVK-------------------QSTNE 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +    +++SG         +    +   + +  ++ G     +        P        
Sbjct: 217 VGGRVLDMSGAQYIIRGLGYLHSLNNLKLVVVGNKDGTPVLLKDLGTVSFGPDIREGAAE 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I   +  ++    I         +     P    +      G    S   
Sbjct: 277 WNGEGETVGGIVIMRQGMNALNVINGVKAKLRQIAPSLPPGVEIMPAYDRSGLIHASIHT 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +      A +V +V+ + + + +  L+   ++ + VI++   L LLG +  + S+ G+ 
Sbjct: 337 LQRDLLEEAIIVSLVIIIFLFHFRSALIPILALPIAVIVSFIPLYLLGVSSNIMSLGGLA 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSV----------FCSLDMGFSRAYSTIFDSNITAL 471
           L +G+ VD++I++ E       + Q               L     +    +F S +  +
Sbjct: 397 LAVGVMVDASIVMVENGYRHLSERQENNSEPVKEPERRRILINAAKQVGPALFFSLLIIV 456

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G   R  A T  L++  S   A++++  +M+ +IR +          
Sbjct: 457 VSFLPVFLLQAQSGRMFRPLAWTKTLAVGSSSILAVTLIPVLMVMLIRGRLRPEHTNPIA 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFS 557
                I   I    +R R+  + ++++F 
Sbjct: 517 RITQAIYLPILRFCLRHRWLIIVLNLIFL 545



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 61/165 (36%), Gaps = 10/165 (6%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           + I  L+ I   F +  AL  I  L + +  +     L G+  N+ ++  +   +G  V+
Sbjct: 345 AIIVSLVIIIFLFHFRSALIPILALPIAVIVSFIPLYLLGVSSNIMSLGGLALAVGVMVD 404

Query: 736 DKVVVYDR-MR------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +V+ +   R      +N          R ++  +  +      ++ +   +S LP+ +
Sbjct: 405 ASIVMVENGYRHLSERQENNSEPVKEPERRRILINAAKQVGPALFFSLLIIVVSFLPVFL 464

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                   F   A      +  ++  ++ +   +++ +   R + 
Sbjct: 465 LQAQSGRMFRPLAWTKTLAVGSSSILAVTLIPVLMVMLIRGRLRP 509



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 78/246 (31%), Gaps = 13/246 (5%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +             E   L    Y   ++      +      + E + L      +  G 
Sbjct: 800  ASIYYSKGPAMIRDEGGELTGYIYVDLNTTNYGGFVNKANHLLQEKLKLPPGYTYKWSGE 859

Query: 660  KI---SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                       K I+ ++   I +L+Y+        AL  +      +T  L    L   
Sbjct: 860  YKFEEQANQRLKLILPIVFIVILVLLYLVF-HSVAEALMLMIPTAYALTGGLLLQWLLHY 918

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY------TTSISFRDLIDKSINETLG 770
             F++      + L G +V   VV+   +R+ +          T         +     L 
Sbjct: 919  NFSVAVAVGYIALFGIAVETGVVMVVYLREALSERVASGRAQTKEDLEAAAIEGAVLRLR 978

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T +A   S+ P+ +    G  V+   A P+  G++ ++ + + +     + + +  
Sbjct: 979  PILMTVIAVLASLAPILLETGIGSDVMKPIAAPIVGGMITSSINVLILLPIFFVMLKERA 1038

Query: 828  AKNARI 833
             K  ++
Sbjct: 1039 LKRGKL 1044


>gi|319792537|ref|YP_004154177.1| acriflavin resistance protein [Variovorax paradoxus EPS]
 gi|315595000|gb|ADU36066.1| acriflavin resistance protein [Variovorax paradoxus EPS]
          Length = 1071

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 66/634 (10%), Positives = 171/634 (26%), Gaps = 44/634 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--L 58
           +R     +++  +I       A P  L +   D FP                   ++   
Sbjct: 6   LRRPYTFIVMAMLIVL-----ATPFVLARMATDIFPEINIPV-----------VSVIWNY 49

Query: 59  EVDEDDFVNGFLQMYSDE-LRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  +   +    +  L + +              + I + F  +   E    +V  
Sbjct: 50  TGLPAQEMGQRISGQVERGLTTTVSDIEHIESQSLAGVSIIKVFFQPTANIEMAISQVVA 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q    +L       L++  +   + ++    +      +++  +   + Q   Q+   
Sbjct: 110 SMQAQVRQLPPGITPPLVIKYSASSVPVIQLALSSPTRSENSLFDA--TVNQLRPQLITV 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +  + D   ++      + +       N                 
Sbjct: 168 PGAAIPFPYGGKNRLISVDLDTQAMQARGLAPSDVVNAINTQNLILPSGTAKFGATEYGV 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     D+    +     +      +    +  
Sbjct: 228 RMNGSPDAIAGL--------------------NDLPIRTVNGATVYVRDVAYVRDGFSPQ 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    +     +  +                       
Sbjct: 268 TNIVRQDGVRGVLLSVLKNGGASTLDIVANIRAMLPIATQSMPQDIKVTPLFDQSVFVKA 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         + A L   ++ + +   +  L+   +I L+++ ++ +L  LG TL L ++
Sbjct: 328 AVKGVVFEAILAAALTAAMVLLFLGNWRSTLIIGLTIPLSILASILVLYSLGETLNLMTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD  I+  E I         +  ++++G     S  F S +   I  V +
Sbjct: 388 GGLALSVGILVDQAIVTIENIERHLHMGTPLREAIEVGAGEIGSAAFVSTLCICIVFVPM 447

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           FF  G         A  +  ++L S   + ++V  +++ ++     + ++    S    +
Sbjct: 448 FFLSGVARFLFVPLAEAVVFAMLASYLLSRTLVPTLVMLLMGGVHAQPVEGKKPSALQRV 507

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +F R R     +  +        +        +       LG      VD   +
Sbjct: 508 YQSFDRRFERVRRAYTLLLSVVLSKRGGFIGLFLGFCLLSCLLYPVLGRDFFPTVDAGQI 567

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           R ++ +     I       ++  +   +  P D 
Sbjct: 568 RLHVRAPTGTRIEETARLTDRVEVAIRELVPADQ 601



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 77/218 (35%), Gaps = 9/218 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V   Y          V   V+  + E+ P  +  +   +  ++         +GV 
Sbjct: 831  NIAPVIDVYVSVQGTDLASVASKVQVLVDEMRPKLSRGSQVTIRGQVQTMQSSFIGLGVG 890

Query: 675  ISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +L+Y+ I      W  A   IT L   +        + G   ++ A+   +  +G
Sbjct: 891  LAMAIVLVYLLIVVTFQSWLDAAIIITALPAALAGIAWMLFITGTTLSVPALTGAIMTMG 950

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++    R+ ++     I       +     +   + T++A  I ++PMA+   
Sbjct: 951  VATANSILLVSFARERLQA---GIPPLSAALEGGATRIRPVLMTALAMIIGMIPMALGLG 1007

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             G          +  G++ A  S++F    +   ++  
Sbjct: 1008 EGAEQNAPLGRAVIGGLLFATVSTLFFVPAVFAGVHSR 1045



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 51/134 (38%), Gaps = 4/134 (2%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L    T+ L I  ++      G   NL  +  +   +G  V+  +V  + +    +
Sbjct: 354 WRSTLIIGLTIPLSILASILVLYSLGETLNLMTLGGLALSVGILVDQAIVTIENI---ER 410

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                   R+ I+    E    +  +++   I  +PM    G     F +P+A  +V A 
Sbjct: 411 HLHMGTPLREAIEVGAGEIGSAAFVSTLCICIVFVPMFFLSGVARFLF-VPLAEAVVFAM 469

Query: 810 SSSIFIAAPILLFI 823
            +S  ++  ++  +
Sbjct: 470 LASYLLSRTLVPTL 483


>gi|300927341|ref|ZP_07143065.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 182-1]
 gi|300416697|gb|EFK00008.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 182-1]
          Length = 1047

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKTAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|167035472|ref|YP_001670703.1| multidrug efflux protein [Pseudomonas putida GB-1]
 gi|166861960|gb|ABZ00368.1| acriflavin resistance protein [Pseudomonas putida GB-1]
          Length = 1014

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/466 (12%), Positives = 137/466 (29%), Gaps = 29/466 (6%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +           +         +  +  +         RQ  + I++        + +
Sbjct: 45  ITVTTAYPGANAETIQGYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRL 104

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++      V +KL  D +  +L        +++       ++ +   + +  + R   
Sbjct: 105 FTELLAKANEVRNKLPQDSEDPVLSKEAADASALMYVSFYSKEMSN--PQITDYLSRVIQ 162

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++       +       +  +    DP +L     +   ++      N           
Sbjct: 163 PKLATLPGMAEAEILGNQVFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGE 222

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
           ++  S      ++                      +    +     G  R        + 
Sbjct: 223 YVVTSINASTELKSA--------------------EAFAALPVKTSGDSRVLLGDVARVE 262

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                                       +    I+    +   L++         +    
Sbjct: 263 MGAENYDTVSSFDGTPSVYIGIKATPAANPLEVIKEVRRIMPELQSQLPSALKVSIAYDA 322

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S      T      +V++V+F+ +   +  L+   +I L++I  L  + ++G +
Sbjct: 323 TLFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVLIPVVTIPLSMIGVLFFMQMMGYS 382

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L L ++  +VL IGL VD  I+V E I     + +S F +   G       +    IT  
Sbjct: 383 LNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSPFDAALEGAREIAMPVVSMTITLA 442

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                + F     G   + FA+T+  +++IS   A+++   M   +
Sbjct: 443 AVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALTLSPMMCALL 488



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 58/144 (40%), Gaps = 7/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  + T+ L +   L F  + G   NL  + A++  IG  V+D +VV + +    +
Sbjct: 355 LRSVLIPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIH---R 411

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                 S  D   +   E     V  ++       P+       G++   FA+ +A  ++
Sbjct: 412 HMEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVI 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKN 830
           ++   ++   +P++  +   + +N
Sbjct: 472 ISGIVAL-TLSPMMCALLLRQEQN 494



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 60/154 (38%), Gaps = 6/154 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+ +   L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 851  GLALAIIFLVLAAQFESFRDPLVILVTVPLSICGALLPLFLGISSMNIYTQVGLVTLIGL 910

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                 +++ +    N       +S R+ I+++    L   + T+ A    ++P+ +    
Sbjct: 911  ISKHGILIVE--FANQLREERGLSVREAIEEAAAIRLRPVLMTTAAMVFGMVPLILATGA 968

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            G          +A G+ +    ++F+   I   +
Sbjct: 969  GAVSRFDIGTVIATGMSIGTLFTLFVLPCIYTLL 1002


>gi|326204484|ref|ZP_08194341.1| protein-export membrane protein SecD [Clostridium papyrosolvens DSM
           2782]
 gi|325985277|gb|EGD46116.1| protein-export membrane protein SecD [Clostridium papyrosolvens DSM
           2782]
          Length = 442

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 85/224 (37%), Gaps = 5/224 (2%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +++  +   + Q      +  + L     D             K   +      +    +
Sbjct: 198 MDNDLVSAPNVQTQITGTSARITLGGTASDEQRDEAKNLAGLIKSGSLPFKLEARQVNNI 257

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
            P +    +   I   I++ I + +++   ++    L A   LIL     L   +   I 
Sbjct: 258 SPTLGSNALNVSINAFIVALILICLFMIFYYRLP-GLIASIALILHTVMELLALSWTNII 316

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++  IG +V+  V++++R++  +K      +    ID          + +++
Sbjct: 317 VTLPGIAGLVLTIGMAVDANVIIFERIKDEIK---NGKTLHAAIDVGFKRAFSAVLDSNV 373

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
              IS + +  +G   I SFA  +  G+V++   +   A+ I+L
Sbjct: 374 TTLISAVVLWKFGTGPIQSFAYTLGIGVVLS-FITAVTASRIML 416



 Score =  118 bits (295), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 114/403 (28%), Positives = 203/403 (50%), Gaps = 23/403 (5%)

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH---- 187
           +  +      +  +     +  +  +  ++ +  II +R+D   I +  I          
Sbjct: 40  RTGIDIQGGVDARLYAVTKDKSKAKAEDLDAARIIIGKRLDSKNIFDRVITVDKDKGYIL 99

Query: 188 -RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
            +I  +     DP +  + +G TA ++F +V  +                    YL  +K
Sbjct: 100 VQIPHKKGEAFDPQKSIEEIGKTALLTFQEVDTSKKDANG-------------NYLPTNK 146

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           + + G  +  AT   D +     V +     G ++F E T   IGKP+A+ +D  +++AP
Sbjct: 147 IILEGGDVKDATPEIDGENGGYCVALKLTSEGGKKFSEATGRLIGKPIAIFMDNDLVSAP 206

Query: 307 VINQAIPSGKAQISGNFTI-----ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +   I    A+I+   T      + A  LA ++++GSLP KL   +  N+   LGS+++
Sbjct: 207 NVQTQITGTSARITLGGTASDEQRDEAKNLAGLIKSGSLPFKLEARQVNNISPTLGSNAL 266

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A +  L+LI LFMI  Y   GL+A  ++ L+ ++ L  LS     +TLP IAG+V
Sbjct: 267 NVSINAFIVALILICLFMIFYYRLPGLIASIALILHTVMELLALSWTNIIVTLPGIAGLV 326

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+AVD+N+++ ERI++E +  +++  ++D+GF RA+S + DSN+T LI+ VVL+ FG
Sbjct: 327 LTIGMAVDANVIIFERIKDEIKNGKTLHAAIDVGFKRAFSAVLDSNVTTLISAVVLWKFG 386

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G ++ FA T+G+ +++S  TA++  R M+  I   +  K   
Sbjct: 387 TGPIQSFAYTLGIGVVLSFITAVTASRIMLKSIQDIEVAKHHW 429



 Score = 38.5 bits (87), Expect = 4.9,   Method: Composition-based stats.
 Identities = 25/252 (9%), Positives = 63/252 (25%), Gaps = 22/252 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR +  +     ++     ++         +    P       I  G+D++GG    L  
Sbjct: 1   MRGSNAVKFFSILLII--GILTWIAAYGSILGFEIPGV---KEIRTGIDIQGGVDARLYA 55

Query: 61  DEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNK--ITLSFA----DSRFKENI 111
              D        L      +   L  + I    +   ++K  I +       ++   +  
Sbjct: 56  VTKDKSKAKAEDLDAARIIIGKRLDSKNIFDRVITVDKDKGYILVQIPHKKGEAFDPQKS 115

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH--------AIEQS 163
            +++         +++   K          +I +                     A++ +
Sbjct: 116 IEEIGKTALLTFQEVDTSKKDANGNYLPTNKIILEGGDVKDATPEIDGENGGYCVALKLT 175

Query: 164 MEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
            E  ++  +  G        +     L+  P  Q          T    +  +       
Sbjct: 176 SEGGKKFSEATGRLIGKPIAIFMDNDLVSAPNVQTQITGTSARITLGGTASDEQRDEAKN 235

Query: 224 KGFMFGVRFLRD 235
              +     L  
Sbjct: 236 LAGLIKSGSLPF 247


>gi|217979527|ref|YP_002363674.1| efflux transporter, RND family, MFP subunit [Methylocella
           silvestris BL2]
 gi|217504903|gb|ACK52312.1| efflux transporter, RND family, MFP subunit [Methylocella
           silvestris BL2]
          Length = 1462

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/520 (12%), Positives = 141/520 (27%), Gaps = 44/520 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      V++  +I   G L  L     ++  D FP+                  ++   
Sbjct: 10  LSRPLTFVVMAILIAIYGALAIL-----KTPTDIFPNIGIPV-----------VSVIWTY 53

Query: 61  D--EDDFVNGFL-QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +      + G +   Y   + + +                + + F  +        +VT 
Sbjct: 54  NGLPPGDMAGRVISNYERAVSTTVNDIEHIESQSFVTYGVVKIYFQPTVDVSAAQAQVTA 113

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q +  +L        ++      + I+    + D +       +         Q+   
Sbjct: 114 ISQTILKQLPAGINPPQILVYNASSVPIIQLALSSDSLPEA--RLNDLAANFIRPQLASI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                         Q   + D   LR    +   +    V  N         +       
Sbjct: 172 PGAQMPSPYGGAARQAQIDLDQKALRAHNLSAQDVVDALVRQNIITPVGTQKI------- 224

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                        G +      N  PK  +   DI    +     F      +       
Sbjct: 225 -------------GRYEYTIDLNDSPKRLQEFNDIPIKVVNGAVVFMRDVAFVHDGSPPQ 271

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S    I+        + A   P     +          
Sbjct: 272 TNIVQMDGAKGVLISVVKNGSASTLDIIDGVKTAIPAIEASLPPGVRLRLVNDQSAFVKS 331

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +       I A L  +++ + +   +  L+   SI L ++ +L  LSL G T+ + ++
Sbjct: 332 SVTNVVREGVIAASLTGLMILVFLGSWRSTLIITISIPLAILSSLVFLSLTGQTINVMTL 391

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     + + +  ++  G          S +   IA V L
Sbjct: 392 GGLALAVGILVDDATVTIENINRHLHRGEDIETAIVEGAREIMPPATVSLLCICIAFVPL 451

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                  G   R  A  +  +++ S     ++   M   +
Sbjct: 452 LSLDGVAGYLFRPLATAVVSAMVASYVLTYTLTPTMARAL 491



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 59/159 (37%), Gaps = 5/159 (3%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            R+ + G+  S + + + I + F  W   L  I  L   +   +    +     +  A+  
Sbjct: 875  RQLLFGLGFSILLIYLLIVVNFQSWLDPLVIILALPAALAGIVWMLFITRTPLSAPALTG 934

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             +  +G +  + ++V    R+ +      +        +        + T++A  I + P
Sbjct: 935  AIMCMGVATANSILVISFAREELA---RGVEPAAAALAAGAARFRPVLMTALAMIIGMAP 991

Query: 786  MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            MA+  G         +  G+++A  +++  A  +   + 
Sbjct: 992  MAIEPGQN-TPLGRAVIGGLMLATCATLVFAPVLFALLR 1029



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 83/274 (30%), Gaps = 5/274 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
                +           +  +     +     I + V+    V +  V    +       
Sbjct: 214 NIITPVGTQKIGRYEYTIDLNDSPKRLQEFNDIPIKVVNGAVVFMRDVAFVHDGSPPQTN 273

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             Q    +   +  ++     ++     ++     I   +P               +  +
Sbjct: 274 IVQMDGAKGVLISVVKNGSASTLDIIDGVKTAIPAIEASLPPGVRLRLVNDQSAFVKSSV 333

Query: 667 RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
              +   +I+A    + I +    W   L    ++ L I  +L F +L G   N+  +  
Sbjct: 334 TNVVREGVIAASLTGLMILVFLGSWRSTLIITISIPLAILSSLVFLSLTGQTINVMTLGG 393

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  V+D  V  + +    +           I +   E +  +  + +   I+ +P
Sbjct: 394 LALAVGILVDDATVTIENIN---RHLHRGEDIETAIVEGAREIMPPATVSLLCICIAFVP 450

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +    G     F  P+A  +V A  +S  +   +
Sbjct: 451 LLSLDGVAGYLFR-PLATAVVSAMVASYVLTYTL 483


>gi|34557635|ref|NP_907450.1| RND PUMP protein [Wolinella succinogenes DSM 1740]
 gi|34483352|emb|CAE10350.1| RND PUMP PROTEIN [Wolinella succinogenes]
          Length = 1009

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 70/595 (11%), Positives = 164/595 (27%), Gaps = 47/595 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++    +C  G++        +  +  FP                      +  
Sbjct: 7   RRPITTLMFALALCFFGVMA-----QNRMPVSLFPDVDIPVVT---------ITTTYKGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E    +        +  Q  + +T  F  S+  E   + V   L  
Sbjct: 53  NPETIESKVTDKIEEAIGGIDGMDQIFSTSAQNLSYVTAQFVLSKDIEVAVNDVRDKLSA 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +N  L  +  K ++         ++    +       + E      +     +   +   
Sbjct: 113 LN--LGSEVDKPIIQKFDVGAAPVLSIFLSST--TKESTELMKHADQVIKPLLQRIQGVG 168

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +    DP  + +L      ++      N    G                
Sbjct: 169 KVNLVGYKERVVQILPDPFEMNRLGLDYRDIAAKIGAENLKIDGGRLIASKHEWKITTDA 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  I +                                   +   L       
Sbjct: 229 DATLIEELGNIQIL------------------------PGILLKEIAKVQDGLQEARSFA 264

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +     +        LR+ S   +L+I+          S   
Sbjct: 265 SFGESPGVILEIQKISGSNEIAIAQGIKERLPYLRSLSEGYELSIM-RDTTQYIQDSIDD 323

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   L  +++ + +      LVA  S+ +++  T A++S  G +L L ++  + 
Sbjct: 324 ARFDLLLGGVLATLIVLLFLRNLTITLVAFLSLPISIFGTFAIMSATGQSLNLLTLIALT 383

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ +D  I+V E I ++  +      +   G      +I   +   L   V +   G
Sbjct: 384 LSIGIIIDDAIVVIENIYKKLEEGMERGKAALEGVREIGFSIIAISAMLLSVFVPVANMG 443

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     F +T+  +I+IS    I+ +  +   I   ++ +   ++      L    +
Sbjct: 444 GVVGRFFTSFGVTVSAAIIISYIVVITFIPMISSLIANPEQNRFYRLSEPFFIALDRTYL 503

Query: 539 AIQFMRARF-WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I     RF + + ++I         L        +  +   +  +       +S
Sbjct: 504 KILEGVLRFRYWIVLAIFLLFAFSLSLAGKLGMNFMPDEDKSEFELFIKAQPGIS 558



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/230 (15%), Positives = 74/230 (32%), Gaps = 6/230 (2%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +    + LQ         +     L   +    + +A  + ++     +  +     + 
Sbjct: 249 EIAKVQDGLQEARSFASFGESPGVILEIQKISGSNEIAIAQGIKERLPYLRSLSEGYELS 308

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
                   I   +       ++   +A LI +         L A  +L + I  T    +
Sbjct: 309 IMRDTTQYIQDSIDDARFDLLLGGVLATLIVLLFLRNLTITLVAFLSLPISIFGTFAIMS 368

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G   NL  + A+   IG  ++D +VV + +    K     +       + + E     
Sbjct: 369 ATGQSLNLLTLIALTLSIGIIIDDAIVVIENI---YKKLEEGMERGKAALEGVREIGFSI 425

Query: 773 VYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
           +  S       +P+A  GG V     SF + ++  I+++    I     I
Sbjct: 426 IAISAMLLSVFVPVANMGGVVGRFFTSFGVTVSAAIIISYIVVITFIPMI 475



 Score = 39.3 bits (89), Expect = 2.5,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 682  IYIWIRFKWYFALGAITTLILDITKTLGFFALF---GIEFNLTAVAAVLTLIGYSVNDKV 738
            + +   ++       I    L ++ T  F ALF     +   + +  +L L     N  +
Sbjct: 854  LILASLYESLLQ-PLIIMTALPLSFTGAFLALFVSGQTQSLFSLMGLLLLLGMVGKNSTL 912

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            +V               S ++ +  +    L   + T++A    +LP+A+    G +   
Sbjct: 913  LVDV----ANHKLRAGASVKEALLGAGESRLRPILMTTIAMVFGMLPLAISQGAGSAAKA 968

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               I M  G++++   S+ I   I   +     K  R
Sbjct: 969  PMGITMIGGLIISMILSLLIVPAIYSILAPLDQKLRR 1005


>gi|322380775|ref|ZP_08054881.1| cytoplasmic pump protein of the hefABC efflux system [Helicobacter
           suis HS5]
 gi|321146779|gb|EFX41573.1| cytoplasmic pump protein of the hefABC efflux system [Helicobacter
           suis HS5]
          Length = 1048

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 74/605 (12%), Positives = 167/605 (27%), Gaps = 48/605 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+   MI   G +      L +  +  FP+      +                  
Sbjct: 13  RPITTVMFALMIVFFGTMA-----LKKISVALFPNVDYPIVV---------VKTQYPGAS 58

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +E    +        +     + +T+ F   +      + V   +  V
Sbjct: 59  ADIVESKVTDKIEEAVMEIDGIKKVTSNSALNVSVVTIEFVLEKPITVAVNDVINKVSSV 118

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
               + + +K  +        +I+    +         E +          +   E    
Sbjct: 119 TFN-DTNIRKPTVDKVDTSGQAILSIFLSSK--TQSLAELNDHAKNVIKPMLQKVEGVGN 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     Q+    DP+ L +   T   +       N    G     +    +      
Sbjct: 176 VQLNGYQEKQIRIYADPTLLNKYGLTFNDLYNTLNTQNLEMDGGKIISKTKNYAILVDGN 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +I+ I +                                   I K +   +    
Sbjct: 236 SYKLSDIANIQI------------------------GSNVRLGDIATIEKGIDTDITYAS 271

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         A  +    ++        +RA S                  S    
Sbjct: 272 YGNEPGIVLEVQKIAGANEIKIVDAIYKEMDAMRAASPGYN-IRPFLDTTDYTRHSIEDV 330

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K    +   L + V+FM +       V+  SI ++++ T AL++ +G +L + ++  + L
Sbjct: 331 KFDLILGGILAVSVVFMFLRSFSITFVSAMSIPISIMGTFALVNWMGFSLNMLTMVALTL 390

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV---LFF 479
            IG+ +D  I+V E I ++         +   G       I   +   L   +    +  
Sbjct: 391 SIGIIIDDAIVVIENIHKKLESGMDKKTASYEGVHEIAFAIIAISAMLLSVFIPVGSMTG 450

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI---NPLSRFFLIPD 536
             G   + F IT+ L+I IS    ++++  +   ++  K+    +           L   
Sbjct: 451 MSGRFFKSFGITVALAIAISYIVVVTVIPMLSSILVNSKQSAFYNFTEPFFQKMDKLYAK 510

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            +           + ++ +F                 + +G   + V A+  + L  +  
Sbjct: 511 LLGWILNHKLIILLVVAGIFVSSVRVASKLGMEFILQEDRGRFYILVKADTDISLQHMLQ 570

Query: 597 NLESL 601
            +++L
Sbjct: 571 KMKAL 575



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/223 (13%), Positives = 80/223 (35%), Gaps = 8/223 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +   V +  +P    +   +L  V+    + +  +          ++    +  G   +
Sbjct: 797  NRQRSVTVLARPAGGASLGDLLNQVRAHKDKWLVQNVFFAFTGQSERVQENSVAFG-TAI 855

Query: 674  IISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              + I + + +   ++     L  + T+ L  +       L     ++ ++  ++ LIG 
Sbjct: 856  STAFILIYMILAALYESILEPLIIMITMPLSFSGAFFALGLVHQPMSMFSLMGLILLIGM 915

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               +  ++ D  ++  K         + +  +    L   + T++A    +LP+A+    
Sbjct: 916  VGKNATLIIDIAKEKRKE---GHGIEEAVILAGESRLRPILMTTIAMVFGMLPLALATGQ 972

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G ++     I M+ G++V+   S+ +       I     K  +
Sbjct: 973  GSAMKAPIGIAMSGGLIVSTLLSLLVVPIFYRLIAPIDDKLKK 1015



 Score = 45.5 bits (105), Expect = 0.036,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 79/256 (30%), Gaps = 15/256 (5%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G  +K      +     V L  + +  + +          +     L   +    + +  
Sbjct: 234 GNSYKLSDIANIQIGSNVRLGDIATIEKGIDTDITYASYGNEPGIVLEVQKIAGANEIKI 293

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              +      +    P   I+            +       ++   +A+ +       + 
Sbjct: 294 VDAIYKEMDAMRAASPGYNIRPFLDTTDYTRHSIEDVKFDLILGGILAVSVVFMFLRSFS 353

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
               +  ++ + I  T       G   N+  + A+   IG  ++D +VV + +    K  
Sbjct: 354 ITFVSAMSIPISIMGTFALVNWMGFSLNMLTMVALTLSIGIIIDDAIVVIENIH---KKL 410

Query: 752 TTSISFRDLIDKSINETLGRSVYTS---MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            + +  +    + ++E     +  S   ++ FI V  M    G    SF I +A  I ++
Sbjct: 411 ESGMDKKTASYEGVHEIAFAIIAISAMLLSVFIPVGSMTGMSGRFFKSFGITVALAIAIS 470

Query: 809 ---------ASSSIFI 815
                      SSI +
Sbjct: 471 YIVVVTVIPMLSSILV 486


>gi|300920627|ref|ZP_07137045.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 115-1]
 gi|300412366|gb|EFJ95676.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 115-1]
          Length = 1047

 Score =  127 bits (319), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 63/599 (10%), Positives = 152/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   +  ++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLGEVKNALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|121583087|ref|YP_973528.1| CzcA family heavy metal efflux protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120596349|gb|ABM39786.1| heavy metal efflux pump, CzcA family [Polaromonas naphthalenivorans
           CJ2]
          Length = 1055

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 67/601 (11%), Positives = 163/601 (27%), Gaps = 44/601 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLP--QSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           R   W ++   ++    L++         ++ LD  P       I               
Sbjct: 4   RFIRWSIVNRFLVLLATLMLGAWGVYSVLRTPLDALPDLSDVQVI---------IRTSYP 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +          +              + + + F D         +V  +L
Sbjct: 55  GQAPRIVENQVTYPLTTTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTDLYWARSRVLEYL 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V S+L    K +L    T                     +           ++    +
Sbjct: 115 NQVQSRLPAQAKASLGPDATGVGWIYQY-ALVDRSGTQDLGQLRALQDWFLKYELKTVPN 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +      ++ Q     DP +L        K++      N    G +  +         
Sbjct: 174 VAEVASIGGMVRQYQIVLDPQKLAAYAIPHTKVAEAVQKANQEAGGSVLELGEAEYMVRA 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              ++   +                     + ++    G              P      
Sbjct: 234 TGYLKGLEDFRA------------------IPLTTTAGGVSVRLGDVARIQIGPEMRRGI 275

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G +         +   ++  +   TI       A L+A        +      G    + 
Sbjct: 276 GELDGEGEAVGGVIIMRSGKNALETIAAVKAKMAQLQASLPQGVEVVTTYDRSGLINRAV 335

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                       +V +V F+ + + +  LVA  S+ L ++    ++   G    + S+ G
Sbjct: 336 DNLTYKLLEEFLVVAVVCFVFLFHLRSALVAIISLPLGILAAFIVMHYQGVNANIMSLGG 395

Query: 420 IVLGIGLAVDSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNI 468
           I + IG  VD+ +++ E   +                ++ +  +    +     +F S +
Sbjct: 396 IAIAIGAMVDAAVVMIENAHKHLEHWAHAHPGEKLEGETRWQVIGDAAAEVGPALFFSLL 455

Query: 469 TALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
              ++ + +F      G      A T   ++  +   +++++  +M ++IR +       
Sbjct: 456 IITLSFIPVFTLQAQEGRLFAPLAFTKTYAMAAAAGLSVTLIPVLMGYLIRGRIPDEKSN 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                   +   +    +RA    + ++ +    S+  L   G  +      G  L + +
Sbjct: 516 PLNRFLIAVYRPLLNIVLRAPKMTLVVAGIVLATSLWPLQHIGGEFMPRLDEGDLLYMPS 575

Query: 586 N 586
            
Sbjct: 576 A 576



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/271 (14%), Positives = 86/271 (31%), Gaps = 9/271 (3%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                  +         +         VV S++  ++I D               +     
Sbjct: 770  MRYPRELRDSMETLRSLPFVTERGQRVVLSDVADIRITDGPPMLRSENARLSGWVYVDIR 829

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            D   ++ V +M K    ++        +     +       K  + V  + + + + +++
Sbjct: 830  DRDLRSAVQDMQKAVTEKVKLPPGYSISWSGQFEFLERATAKMKIVVPFTLMIIFVLLYL 889

Query: 687  RF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
             F ++  A+  + TL   +   +    L     ++      + L G S    V++   +R
Sbjct: 890  TFKRFDEAVLIMATLPFALVGGIWLLYLLSYNLSVAGAVGFIALAGVSAEFGVIMLLYLR 949

Query: 746  ----KNMKLYTTSI-SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSF 797
                + +    T+     D I +     +     T       +LP+      G  V+   
Sbjct: 950  HAWDERLAQGKTNAEDLLDAIREGAVLRVRPKAMTVAVILAGLLPIMWGTGTGSEVMQRI 1009

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            A PM  G++ A   S+F+   + L +   R 
Sbjct: 1010 AAPMVGGMITAPLLSMFVIPAVYLLMRRPRE 1040



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 80/215 (37%), Gaps = 14/215 (6%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +  ++  + + V + T  +   +  +    L  K +   ++ A+   +++   F
Sbjct: 302 AAVKAKMAQLQASLPQGVEVVTTYDRSGLINRAVDNLTYKLLEEFLVVAVVCFVFL---F 358

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               AL AI +L L I          G+  N+ ++  +   IG  V+  VV+ +   K++
Sbjct: 359 HLRSALVAIISLPLGILAAFIVMHYQGVNANIMSLGGIAIAIGAMVDAAVVMIENAHKHL 418

Query: 749 KLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF--- 797
           + +            +   +I  +  E      ++ +   +S +P+          F   
Sbjct: 419 EHWAHAHPGEKLEGETRWQVIGDAAAEVGPALFFSLLIITLSFIPVFTLQAQEGRLFAPL 478

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           A    + +  AA  S+ +   ++ ++   R  + +
Sbjct: 479 AFTKTYAMAAAAGLSVTLIPVLMGYLIRGRIPDEK 513


>gi|300784485|ref|YP_003764776.1| hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1
           family [Amycolatopsis mediterranei U32]
 gi|299793999|gb|ADJ44374.1| hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1
           family [Amycolatopsis mediterranei U32]
          Length = 1046

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 66/518 (12%), Positives = 151/518 (29%), Gaps = 37/518 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQS-MLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           +RN   + +L  +I   G   ALP    Q     +FP A                     
Sbjct: 9   LRNRSLIGLLALVIVGFG-AFALPQLKQQLFPSLQFPQAQIVTA--------------YP 53

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D V+  +    +     LK       +     +++   F      +    ++   +
Sbjct: 54  GASPDAVDRQVSEPLEGGLQGLKGLEQVTSTSSDGVSRVVAQFEFGTDIDAAVSQIQQVV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V ++L  +  +  +   +  ++ + L               +  +  Q   ++   E 
Sbjct: 114 NQVRARLPQN-SEPAVSAGSTDDLPVALVAAGTTG---DPQALAPALTDQVAPELRKIEG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                 +     ++    D ++L       + ++        +             S   
Sbjct: 170 VRTVTVTGVRQPRVTITLDYAKLAAAGVDPSSIATTLQTAGAAVPAGTLTENGKTLS--- 226

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                  V++ G      +      T            G  +       ++    A    
Sbjct: 227 -------VQVGGGQTTVDSLRNLYLTPSATARAGAPARGPVKLG--DVADVQAGFAPPTS 277

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                         +     +     +        L           V          + 
Sbjct: 278 ITRTNGKPSLGLSITMVENGNAVAISQAVRDKLPDLAKK--TGAEMSVVFDQGTPVKDAI 335

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S       +     ++V+ + +L  +  LV   SI L+V++ L  L     +L L ++  
Sbjct: 336 SGLTTEGLLGLAFAVLVILLFLLSVRSTLVTAVSIPLSVVVALLALWTGDLSLNLLTLGA 395

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + + IG  VD +I+V E I+      +    ++  G       +  S +T +   + + F
Sbjct: 396 LTIAIGRVVDDSIVVLENIKRHLAYGEEKQRAVLDGVREVAGAVTSSTLTTVAVFLPIAF 455

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            G   G     FAIT+ +++L S+  ++++V  +  + 
Sbjct: 456 VGGFVGELFSPFAITVTVALLASLLVSLTVVPVLAFWF 493



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 66/187 (35%), Gaps = 10/187 (5%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI-QNTEIVGPKISRELIRKGIVGVIISA 677
           + +            V + +     +     ++  +           L  +G++G+  + 
Sbjct: 291 ITMVENGNAVAISQAVRDKLPDLAKKTGAEMSVVFDQGTPVKDAISGLTTEGLLGLAFAV 350

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+++         L    ++ L +   L       +  NL  + A+   IG  V+D 
Sbjct: 351 LVILLFLL---SVRSTLVTAVSIPLSVVVALLALWTGDLSLNLLTLGALTIAIGRVVDDS 407

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVI 794
           +VV + ++   +        +  +   + E  G    +++      LP+A  G   G + 
Sbjct: 408 IVVLENIK---RHLAYGEEKQRAVLDGVREVAGAVTSSTLTTVAVFLPIAFVGGFVGELF 464

Query: 795 GSFAIPM 801
             FAI +
Sbjct: 465 SPFAITV 471



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 70/200 (35%), Gaps = 4/200 (2%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
               L             T+    +K K+  +        +     +  ++      + +
Sbjct: 803 TGGDLSTTVTAKNTGADLTKTTADIKSKLDGLTFTGGAAYSLGGVSQDQQDAFSNLFLAL 862

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +   + + +   F+     L  + ++    T  +G     G    L ++  +L L+G 
Sbjct: 863 LAAIAIVFLIMVATFRSLIQPLILLVSIPFAATGAIGLLLATGTALGLPSLIGMLMLVGI 922

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V + +V+ D + +        +S  D + +     L   + T+ A   +++PMA+    
Sbjct: 923 VVTNAIVLIDLINQYRAE---GMSVADAVTEGGRRRLRPILMTAAATIFALVPMALGITG 979

Query: 793 VIGSFAIPMAFGIVVAASSS 812
             G    P+A  ++    SS
Sbjct: 980 QGGFIGQPLAIVVIGGLVSS 999



 Score = 47.4 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 50/497 (10%), Positives = 133/497 (26%), Gaps = 43/497 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           ++    L+ A    L   +   F        +++   L  G+     VD  +     ++ 
Sbjct: 540 VVLLALLIFAGTVGLATRLNTNFLDQSGGTTLNMTQKLPAGTS----VDAKEKAATAVEQ 595

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNK------ITLSFADSRFKENIADKVTLFLQGVNSKL 126
                   ++   + +               I+++ A     + ++D++   L     +L
Sbjct: 596 ALA-AEPAVRTYQVSIGGGGTFGFGGGTNTGISVTVAKDTDLDALSDRLRSKLTS-RPEL 653

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                          ++S+ ++  +   +             Q    +       +    
Sbjct: 654 GEIKIGADASGFNSDQVSVTVTAPSEAALKP--------ASDQVAQALRGVSGLTEVSSD 705

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +       +         G +A           +  G       +     +  L    
Sbjct: 706 LSVGSPRVQVEVDDAAAAARGLSASTIGQIANQ--AIAGRTVTQLPVDGQRTDVVLRAGT 763

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
             ++   + G          +         +        T  +                 
Sbjct: 764 APVTVDQVKGLPIPGPGGVVRLDEVAKVSTVDGPASVHRTGGD----------------- 806

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                  +  A+ +G    +T   + + L   +                  + S      
Sbjct: 807 ----LSTTVTAKNTGADLTKTTADIKSKLDGLTFTGGAAYSLGGVSQDQQDAFSNLFLAL 862

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V +++          L+   SI       + LL   G  L LPS+ G+++ +G+
Sbjct: 863 LAAIAIVFLIMVATFRSLIQPLILLVSIPFAATGAIGLLLATGTALGLPSLIGMLMLVGI 922

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
            V + I++ + I +   +  SV  ++  G  R    I  +    + A V +     G   
Sbjct: 923 VVTNAIVLIDLINQYRAEGMSVADAVTEGGRRRLRPILMTAAATIFALVPMALGITGQGG 982

Query: 487 GFAITMGLSILISMFTA 503
                + + ++  + ++
Sbjct: 983 FIGQPLAIVVIGGLVSS 999


>gi|2498437|sp|Q48815|HELA_LEGPN RecName: Full=Protein HelA
 gi|1234832|gb|AAB05679.1| HelA [Legionella pneumophila]
          Length = 1052

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 75/600 (12%), Positives = 157/600 (26%), Gaps = 57/600 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +++  ++++   +I  +G+         +  +D  P                   +  + 
Sbjct: 10  LKHRWFVLLFTLVIAILGVY-----NFQRLPIDAVPDITNVQ-----------VQINTQA 53

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  V   +    +   S L          R   +++T+ F D          +   
Sbjct: 54  SGYSPFEVEQRITFPIELAMSGLPSLDYTRSLSRYGLSQVTVVFKDGTNIYFARQLINER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI----SHAIEQSMEIIRQRIDQI 174
           LQ V  KL    +  L   +T      + +  N   V      +  E           Q+
Sbjct: 114 LQEVKDKLPPGVETTLGPISTGLGEIFMYTVTNKPNVPISQHYNPTELRTIQDWIIKPQL 173

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
              E   +         Q     DPS+L +   +   +                      
Sbjct: 174 RNVEGVAEVNTIGGYEKQFHITPDPSKLVRYRLSLNDVVEAL------------------ 215

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             + N   V      +    N        +    + +I                 +    
Sbjct: 216 --ERNNANVGAGYIETNGEQNLIRVPGQVQNMADIENIVIASFEGTPVRIRDVAEVALGK 273

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +        +  +           +     E        +          I        
Sbjct: 274 ELRTGAATENSKEVVLGTVFILMGENSRTVSERVAAKMKDINKTLPEGVEAITVYNRTTL 333

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV ++LF+ +   +  L+    I L+++LT+  +     +  L
Sbjct: 334 VNATINTVKNNLLEGALLVCVILFLFLGNIRAALITAMVIPLSMLLTITGMVENQISANL 393

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYSTI 463
            S+    L  GL VD  +++ E   +   + Q     +     R              +I
Sbjct: 394 MSLGA--LDFGLIVDGAVIIVENCIKHLAEQQHALHRVLNLEERLKVISYATTEVIRPSI 451

Query: 464 FDSNITALIATVVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           F   I  ++   +L   G         A T+ +++L SM  A++ V A +   +R    +
Sbjct: 452 FGVFIITVVYLPILTLTGVEGKMFLPMAQTVIIALLASMLFALTFVPAAVAIFLRGHLQE 511

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +   F   R        L  +         G       +G I +
Sbjct: 512 KENWLVHYLSLGYAKVLRRCFHARRVVISAAVALVVVSLGIAFHLGGEFIPSLDEGDIAM 571



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 7/131 (5%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            +  T G FAL+  GI  +++A    + L G +V + +V+   +  N       +  +D +
Sbjct: 912  LALTGGVFALWLRGIPLSISAGVGFIALSGVAVLNGLVMITFI--NKLREQKKVYLKDAV 969

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 970  LQGSLARLRPVLMTALVASLGFVPMALATGTGSEVQRPLATVVIGGIISSTFLTLLVLPG 1029

Query: 819  ILLFIYDWRAK 829
            +    +  R K
Sbjct: 1030 LYYVFHGRRKK 1040


>gi|238782886|ref|ZP_04626915.1| Heavy metal efflux pump, CzcA family [Yersinia bercovieri ATCC
           43970]
 gi|238716309|gb|EEQ08292.1| Heavy metal efflux pump, CzcA family [Yersinia bercovieri ATCC
           43970]
          Length = 1028

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/524 (12%), Positives = 135/524 (25%), Gaps = 48/524 (9%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             M+   G+       L Q+ LD  P       I           +         V   +
Sbjct: 5   AVMMAAWGVWS-----LQQTPLDALPDLSDTQVI---------IRVSYPGKAPQVVEDQV 50

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
                     +                + + F D         +V  +L  V S L  + 
Sbjct: 51  TYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFDDGTDPYWARSRVLEYLSQVQSTLPAEA 110

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           K  L    T                     +           ++    +  +      ++
Sbjct: 111 KAALGPDATGVGWIYEY-ALIDRSGKHSLADLRALQDWTLKFELKTVPNVSEVASVGGMV 169

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            Q     DP R+R L  +  +++      N    G +  +            ++   + S
Sbjct: 170 RQYQVVLDPERMRALNLSHQQIANAITDSNQEGGGSVLEMGAAEYMVRASGYLKTPADFS 229

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
            I +                       G              P        +     +  
Sbjct: 230 NIVITS-------------------RDGTPILLSDVASVRMGPEMRRGVAELNGEGEVAG 270

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            I   +   +   TI         ++         +           +            
Sbjct: 271 GIIVMRYGKNALETINAVKEKLQQIQRSLPAGVEIVPVYDRSQLITQAIDSLSFKLLEEF 330

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            +V ++  + + + +  LVA  ++ L ++    ++   G    + S+ GI + IG  VD+
Sbjct: 331 LVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAIGAMVDA 390

Query: 431 NILV-------NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF--- 480
            I++        E+ R  +               +A   +  +   +L+   + F     
Sbjct: 391 AIVMIENMHKVLEQWRRSHPGQTPASQDYWRISEQAAIEVGPALFCSLLIITLSFIPVFT 450

Query: 481 ----GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
                G      A T   ++ +S   AI++V  +M + IR K  
Sbjct: 451 LQAQEGRMFSPLAFTKTYAMAVSAGLAITLVPVLMGYFIRGKIP 494



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 96/289 (33%), Gaps = 11/289 (3%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S+L    +  ++   G          I +      P+ LS V S     ++     +   
Sbjct: 205 SVLEMGAAEYMVRASGYLKTPADFSNIVITSRDGTPILLSDVASVRMGPEMRRGVAELNG 264

Query: 613 GEK--NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
             +    ++ ++Y          V E +++    +     I         I++ +     
Sbjct: 265 EGEVAGGIIVMRYGKNALETINAVKEKLQQIQRSLPAGVEIVPVYDRSQLITQAIDSLSF 324

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
             +    +  +I     F +  AL AI TL L I          G+  N+ ++  +   I
Sbjct: 325 KLLEEFLVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAI 384

Query: 731 GYSVNDKVVV---YDRMRKNMKLYTTSISFRD-----LIDKSINETLGRSVYTSMAAFIS 782
           G  V+  +V+     ++ +  +      +        + +++  E       + +   +S
Sbjct: 385 GAMVDAAIVMIENMHKVLEQWRRSHPGQTPASQDYWRISEQAAIEVGPALFCSLLIITLS 444

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+          F+ P+AF    A + S  +A  ++  +  +  +  
Sbjct: 445 FIPVFTLQAQEGRMFS-PLAFTKTYAMAVSAGLAITLVPVLMGYFIRGK 492



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 86/258 (33%), Gaps = 16/258 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       V LS +     S     +  +N        V L+ +   S        + +
Sbjct: 771  PVVTANGGQVALSELADIKVSEGPPMLKSENARLSDWVYVDLRGRDLKSAVTEMQQAVAQ 830

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +                   + + +L     + + ++ + + + +++ F       A+  
Sbjct: 831  QVKLPEGVSLGWSGQFEYLERATAKLK----IVLPVTLMIIFVLLYVTFSSVRD-AALIM 885

Query: 700  LILDITKTLGFFALFGIEFNLTAVAA--VLTLIGYSVNDKVVVYDRMRKNMKLYT----- 752
              L      G + L+G+ +N +  AA   + L G +    V++   + + +K +      
Sbjct: 886  ATLPFALIGGVWLLYGLGYNFSVAAAVGFIALAGVAAEFGVIMVLYLNQAVKKHQQPGIT 945

Query: 753  -TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVA 808
             T+      I +     +     T       +LP+   GG    V+   A PM  G+V A
Sbjct: 946  MTASQMSAAIHEGAVLRVRPKAMTVATIMAGLLPIMWGGGTGSEVMQRIAAPMIGGMVSA 1005

Query: 809  ASSSIFIAAPILLFIYDW 826
               S+ +   + + ++  
Sbjct: 1006 PLLSMLVIPAVYMLLHKK 1023


>gi|87310010|ref|ZP_01092143.1| acriflavin resistance protein d [Blastopirellula marina DSM 3645]
 gi|87287256|gb|EAQ79157.1| acriflavin resistance protein d [Blastopirellula marina DSM 3645]
          Length = 1123

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/530 (11%), Positives = 148/530 (27%), Gaps = 37/530 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +   +    G++        +  +   P                   +V+ V 
Sbjct: 9   KQPITVAVGVILSVLAGVIA-----FSRVPIQMTPEVQ---------------SVVISVS 48

Query: 62  E--DDFVNGFLQM-YSDELRSFL---KKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
              ++     ++     E    L             +    +I L F      +    +V
Sbjct: 49  TYWENASAQEIESDVIQEQEQRLGDLAGLVAMTSMSQPGSGQIRLEFQTGTNIDEAMSEV 108

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              L  V        +  +     E    I             A      + R+   +  
Sbjct: 109 DQKLSEVPGYPIGVDQPQIEDFDPESVDYISWIGLASTDPNFDATTLYDFMERRLRPRFE 168

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 Q         ++    +P+ L Q   T A++     + N +  G          
Sbjct: 169 RINGVSQVGIRGAREREVQVRVNPTALAQRGITYAELVAALQMNNGNYSGGKLADGKSDI 228

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                    +   + G+ +    +          V  +  EM         R      + 
Sbjct: 229 RVRMVGRFREADWVEGLVIRREASGPIYLRDVAEVVETHKEMTEWVRARGQRMPFFNFML 288

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                 + T   IN  +               A  +              +         
Sbjct: 289 ESGGNLLETMDSINAEVARLNEPGGVLEQEAKALGVN--------GTFELVQTYDATTYV 340

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
           + +  + +    +   L ++ L + +   +   +   +I ++ ++ + ++ +LG T+ + 
Sbjct: 341 VDAIDLVQSNILVGGLLAVMTLLLFLRSVRTIGIIGIAIPISTVVAVVVMVMLGRTMNII 400

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+AG+   +G+ VD+ I+V E I       +S   +   G     S +  S +T L+   
Sbjct: 401 SLAGMAFAVGMVVDNAIVVIENIFRHLEMGKSSKQAAIDGTQEVASAVLASTLTTLVVFF 460

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +       G   R  A+++  ++ +S   + +++ A     +  K    
Sbjct: 461 PILLIEEQAGQLFRDIALSIMAAVGVSYIVSTTVIPAAAGQWLSIKIKPK 510



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/291 (8%), Positives = 80/291 (27%), Gaps = 7/291 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
                 V +   F                          V+         VR+  + +  
Sbjct: 224 GKSDIRVRMVGRFREADWVEGLVIRREASGPIYLRDVAEVVETHKEMTEWVRARGQRMPF 283

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            +   ++       +  +  +         VLE   K +        +Q  +     +  
Sbjct: 284 FNFMLESGGNLLETMDSINAEVARLNEPGGVLEQEAKALGVNGTFELVQTYDATTYVVDA 343

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
             + +  + ++   +A++  +               + +     +    + G   N+ ++
Sbjct: 344 IDLVQSNI-LVGGLLAVMTLLLFLRSVRTIGIIGIAIPISTVVAVVVMVMLGRTMNIISL 402

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
           A +   +G  V++ +VV + +    +      S +        E     + +++   +  
Sbjct: 403 AGMAFAVGMVVDNAIVVIENI---FRHLEMGKSSKQAAIDGTQEVASAVLASTLTTLVVF 459

Query: 784 LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+ +     G +    A+ +   + V+   S  +           + K  
Sbjct: 460 FPILLIEEQAGQLFRDIALSIMAAVGVSYIVSTTVIPAAAGQWLSIKIKPK 510



 Score = 39.7 bits (90), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/174 (13%), Positives = 65/174 (37%), Gaps = 21/174 (12%)

Query: 679  AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI-----------EFNLTAVAAV 726
             + + + + F  W + +  + ++ L +       AL                ++  +   
Sbjct: 943  IVYLLMVVLFQSWAYPVVIMVSVPLALLGGFAGLALVHHWSVVDRYMPIQNMDVLTILGF 1002

Query: 727  LTLIGYSVNDKVVVYDRM------RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA- 779
            + L G  VN+ +++  +       R      T+  + R+ I KS+   +   + +++ + 
Sbjct: 1003 VILAGVVVNNAILIVYQTINILQGRSEEGEDTSHYTPREAIAKSVESRVRPIMMSTLTSV 1062

Query: 780  --FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               + ++ M   G  +       +  G+VV+   ++ +   +L  ++D R    
Sbjct: 1063 GGMLPLVLMPGSGSELYRGLGAVVVGGLVVSTIFTMILVPVLLSVLFDLRPPVK 1116


>gi|182419371|ref|ZP_02950623.1| acriflavin resistance protein [Clostridium butyricum 5521]
 gi|237666912|ref|ZP_04526897.1| acriflavin resistance protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376702|gb|EDT74274.1| acriflavin resistance protein [Clostridium butyricum 5521]
 gi|237658111|gb|EEP55666.1| acriflavin resistance protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 1067

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 64/588 (10%), Positives = 169/588 (28%), Gaps = 45/588 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++++ ++   G +        +   +  P       +                 
Sbjct: 9   KRPLTIIMVFLVVLMFGGI-----GYSKMPANLMPDIDVPVAL---------VMTQWSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    ++  S +      V    +  + +   F      +   + +   +  
Sbjct: 55  GPEDIDDQISEPIEKSLSSISNVKTTVSKSSEGVSMVVAQFEYGTDVDEKLNDIRSKIDT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D     ++       +I     + +      ++           ++   +   
Sbjct: 115 VKMTLPDDVDTPSILKMDMNAQAIAQIVVSGEGSSDDIMK---YAEDTVQVKLESIDGIT 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     Q+    DP+ L     +   +       N S                   
Sbjct: 172 SADINGGDKTQINVIADPTILSSYGVSLDTIKGLLSATNKSYPYGS-------------- 217

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G       +    +  + +  I                 +           
Sbjct: 218 ------ITQGDDKIVIRSVDKVEALEDIKAIQIPMSNGETVSLDKICTVEYGTVDKQSIY 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +    ++      + L   +    L  +          S + 
Sbjct: 272 RYNGQESLVMDVQKQQDANTVQVMKNVNSKISELNNENAQFNL-KIVNDTSEYINSSIND 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + A +   V+ + +  G+   V   SI  ++I  +ALL   G TL + +++ +V
Sbjct: 331 VMKNLILSAVIAFFVILLFLKSGRASFVVAVSIPTSIIGAIALLYFTGETLNMVTLSSLV 390

Query: 422 LGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + +G+ VD+  +V E I +     N S+  +   G +   + +  S +T +   + + F 
Sbjct: 391 IAVGMVVDNATVVIENIFKYRKDPNLSLEEAAIQGTNTVSTAVMASTLTTVAIFLPILFT 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI--- 534
            G         A T+  ++ +S+  A+++V ++   +   K    ++  P   F  I   
Sbjct: 451 EGFTKIMFGSLAKTLIFALTLSLIVALTLVPSIFAKLSGGKNGAKMEEKPSPIFDKISEG 510

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              I +  ++ +   + IS+   I +I L  T  +       G   + 
Sbjct: 511 YKNIIVLALKHKAVVILISVGMFIGAIVLGATGAIGMDFMSSGDEGMV 558



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 94/248 (37%), Gaps = 6/248 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +         V  +    +++ D        + ++ V +  +  +    T    ++ + 
Sbjct: 765  QIKVTSASGQQVPLNAFAEIKMADGLKSISRTDGDYSVSITAKADNMDTSTASR-LLTQA 823

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
            + E+              ++  E +   ++ ++I+ I + + +  +F+ +      + ++
Sbjct: 824  VNEVDMPRDYSIDVGGSAEMMNESMSSLVMAMVIALILVYMVMVAQFESFSKPFIIMFSI 883

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                   +    +  I  N+  +   + L+G  VN+ +V+ D +   ++      +  D+
Sbjct: 884  PFAFVGVVIALVISRISLNVVGMLGAILLVGIVVNNGIVLIDYI-GQLREAKVQGTLEDI 942

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            + K     L   + T+M   + ++P A+    GG ++   A+ +  G+ V+   ++ +  
Sbjct: 943  VAKGCAARLRPVLMTTMTTVVGMIPSALAFGEGGDMMQPLAVVIIGGLSVSTLVTLVLIP 1002

Query: 818  PILLFIYD 825
             + L    
Sbjct: 1003 TVYLIFDK 1010



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/251 (10%), Positives = 85/251 (33%), Gaps = 5/251 (1%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
           Q+ +     V L  + +           ++    E   +   + Q  ++V   + +    
Sbjct: 243 QIPMSNGETVSLDKICTVEYGTVDKQSIYRYNGQESLVMDVQKQQDANTVQVMKNVNSKI 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++        ++        I+  +       ++ + IA  + +        +     +
Sbjct: 303 SELNNENAQFNLKIVNDTSEYINSSINDVMKNLILSAVIAFFVILLFLKSGRASFVVAVS 362

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           +   I   +      G   N+  +++++  +G  V++  VV + + K  K    ++S  +
Sbjct: 363 IPTSIIGAIALLYFTGETLNMVTLSSLVIAVGMVVDNATVVIENIFKYRK--DPNLSLEE 420

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              +  N      + +++      LP+     +   + GS A  + F + ++   ++ + 
Sbjct: 421 AAIQGTNTVSTAVMASTLTTVAIFLPILFTEGFTKIMFGSLAKTLIFALTLSLIVALTLV 480

Query: 817 APILLFIYDWR 827
             I   +   +
Sbjct: 481 PSIFAKLSGGK 491


>gi|162149610|ref|YP_001604071.1| multidrug resistance protein mdtB [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161788187|emb|CAP57792.1| putative multidrug resistance protein mdtB [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1057

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/517 (11%), Positives = 146/517 (28%), Gaps = 38/517 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L  +I   G++ AL          + P+       + G  L          
Sbjct: 9   LRRPYTFVVLSILILLFGVMSALKTPTDVFPNIKIPAIA--VVWTYGGLL---------- 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+F    +  Y   + S ++            +  + + F       +    VT   Q
Sbjct: 57  -PDEFAARVMYNYEQGVTSTVEGIEHMESDSYYGRGIVKIFFQPGTDIGSAEADVTAISQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L       +++      + ++  +   D +     +       +    +      
Sbjct: 116 TVLMQLPEKIPAPMIMKLEASSVPVITLELTSDTMTPS--DLFKLAQIRVRTLLVTVPGA 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           I       +   +    D  +L+    +   +       N  +      +          
Sbjct: 174 IVPHPYGGMDAFVMFALDQKQLQAHHLSAMDVQNVLDKQNIVRPAGDQKIGPTDWMVATN 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  E+                     +I    +G    +      + +      + 
Sbjct: 234 AQPRSMEELG--------------------NIPIKRVGNSVIYMHDLGQVYRGGHPQTNL 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            ++        +     + S    +     L   L+          V     G    S  
Sbjct: 274 VLVKGRQAVIMVVMKSGEASTLDVVSGVKALIPRLQKVIPASAHISVLNDASGFVKDSII 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L  +V+ + +   +  ++   SI L ++  +  L   G T+ + ++ G+
Sbjct: 334 DVLREMVTAAILTGLVVLLFLGSWRSTVIIATSIPLAILCAVIGLGWAGQTINVMTLGGL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   ++ E I       + +  ++    ++     F S     I  + LF  
Sbjct: 394 ALAVGILVDDATVMIENIDTHLEMGKELEVAIIDAANQIVIPTFVSTTCICIVWLPLFEL 453

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG         A  +  +++ S   + ++V  M  F+
Sbjct: 454 GGVAGWLFMPMAEAIIFAMIASFILSRTLVPTMAKFL 490



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 82/274 (29%), Gaps = 9/274 (3%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              I                     +   R  +  +   +L  +  G     N    K  
Sbjct: 220 DQKIGPTDWMVATNAQPRSMEELGNIPIKRVGNSVIYMHDLGQVYRGGHPQTNLVLVKGR 279

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-----G 672
              +        A T  +    K +   +      +  I     +   ++  I+      
Sbjct: 280 QAVIMVVMKSGEASTLDVVSGVKALIPRLQKVIPASAHISVLNDASGFVKDSIIDVLREM 339

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V  + +  L+ +     W   +   T++ L I   +      G   N+  +  +   +G 
Sbjct: 340 VTAAILTGLVVLLFLGSWRSTVIIATSIPLAILCAVIGLGWAGQTINVMTLGGLALAVGI 399

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D  V+ + +                I  + N+ +  +  ++    I  LP+   GG 
Sbjct: 400 LVDDATVMIENI---DTHLEMGKELEVAIIDAANQIVIPTFVSTTCICIVWLPLFELGGV 456

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               F  PMA  I+ A  +S  ++  ++  +  +
Sbjct: 457 AGWLFM-PMAEAIIFAMIASFILSRTLVPTMAKF 489



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 61/160 (38%), Gaps = 5/160 (3%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S + + + I + F  W      I+ L   +        L     ++ A+   +  +G
Sbjct: 899  LAVSIVLIYLLIVVNFQSWLDPFIIISALPGALAGIAWSLFLTHTHLSVPALTGAIMCMG 958

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + ++V    R+  +L     + +  ++      +   + T+ A  + ++PM++   
Sbjct: 959  TATANSILVVSYARE--RLEVHGDALKAALEAGYGR-IRPVLMTAAAMIVGMIPMSISNS 1015

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                     +  G++VA  S++     +   IY+  +   
Sbjct: 1016 QN-APLGKAVIGGLIVATISTLLFVPCVYAIIYNRSSSRK 1054


>gi|117926660|ref|YP_867277.1| CzcA family heavy metal efflux protein [Magnetococcus sp. MC-1]
 gi|117610416|gb|ABK45871.1| heavy metal efflux pump, CzcA family [Magnetococcus sp. MC-1]
          Length = 1061

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 74/564 (13%), Positives = 160/564 (28%), Gaps = 38/564 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L  +I  +GL +A    + ++ LD  P       I                     V   
Sbjct: 32  LIVVILTLGLAVAGVLAVQRTPLDAIPDLSDTQVI---------IRTEFPGQAPQIVEDL 82

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          L K            + + + F D         +V   L  V   L   
Sbjct: 83  VTYPLSTTLLGLPKTQAVRGFSMFGTSFVYVIFQDGVDMYWARSRVAEALATVQKDLPDK 142

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               +    T                     E           ++       +       
Sbjct: 143 ATPRMGPDATGVGWIFQY-ALVDPTGQHDLAELRALQDWFLKFELATVPGVSEVASVGGF 201

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + +     DP+RLR      +++       +    G +           ++  V    ++
Sbjct: 202 VREYQVRIDPNRLRAFDVPLSRVQQAVKAASLEVGGRVLERAETELMIRSKGYVTSLHDL 261

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                                 + + + G           +  P        +     + 
Sbjct: 262 -------------------QQVVVYAKNGRPVLLTDVARVVEGPELRRGVVELNGEGEVV 302

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   ++  +    IE      A LR G                   +    K      
Sbjct: 303 GGIVVMRSGENALTVIEAVQAKLAQLRPGLPAGVEIRTVYDRAPLIRDAVDYLKHKLLEE 362

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V +V  + +L+ +  LVA  ++ L ++    L+S  G T  + S+ GI + IG  VD
Sbjct: 363 GLVVALVCLVFLLHVRSALVAIITLPLGILGAFILMSSQGITANIMSLGGIAIAIGAMVD 422

Query: 430 SNILVNERIREENRKNQSVFCSLDMG------FSRAYSTIFDSNITALIATVVLFFFGGG 483
           ++I++ E    +         +                 +F S +   ++ + +F   G 
Sbjct: 423 ASIVMVENAHRKLSDLPQPRSAAARRQALIVAAQEVGPGLFFSLLIITVSFLPVFALTGE 482

Query: 484 AVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           + R     A T   ++  +   +++IV  +M+++IR +  K +       F  +   I  
Sbjct: 483 SHRLFAPLAYTKTYAMAFASILSVTIVPILMVWLIRGRIFKELSNPLNRLFVGLYRPILR 542

Query: 541 QFMRARFWGVGISILFSICSICLL 564
             +  R++ + ++++  +     L
Sbjct: 543 LALHLRWFTLLLAVVGLMSLQIPL 566



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/158 (18%), Positives = 59/158 (37%), Gaps = 6/158 (3%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +  L+ +        AL AI TL L I       +  GI  N+ ++  +   IG  V+
Sbjct: 363 GLVVALVCLVFLLHVRSALVAIITLPLGILGAFILMSSQGITANIMSLGGIAIAIGAMVD 422

Query: 736 DKVVVYDRMRKNMKLYTTSISF---RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             +V+ +   + +       S    R  +  +  E      ++ +   +S LP+    G 
Sbjct: 423 ASIVMVENAHRKLSDLPQPRSAAARRQALIVAAQEVGPGLFFSLLIITVSFLPVFALTGE 482

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               F   A    + +  A+  S+ I   +++++   R
Sbjct: 483 SHRLFAPLAYTKTYAMAFASILSVTIVPILMVWLIRGR 520



 Score = 40.1 bits (91), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 7/137 (5%)

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +T L   +   L    L     ++      + L G +V   VV+   + + ++ +    +
Sbjct: 913  MTALPFGLVGGLWAVYLADYHLSVAVAVGFIALGGIAVETAVVMLLYIDQQVR-HDQPQN 971

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMA-VW-----GGSVIGSFAIPMAFGIVVAAS 810
             R L D  I     R     M   + +  +  ++     G  V+   A+PM  G++    
Sbjct: 972  HRALFDAVITGAAMRVRPKLMTVAVIIAGLLPIFYTDGSGSDVMRRIALPMVGGMLSTTL 1031

Query: 811  SSIFIAAPILLFIYDWR 827
             ++ +   + +     R
Sbjct: 1032 MTLIVIPVLYMLWEARR 1048


>gi|256839479|ref|ZP_05544988.1| cation efflux system protein [Parabacteroides sp. D13]
 gi|256738409|gb|EEU51734.1| cation efflux system protein [Parabacteroides sp. D13]
          Length = 1027

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 78/673 (11%), Positives = 199/673 (29%), Gaps = 48/673 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVN 67
           L  ++C + L+I        + +D FP       +           ++ E +    + V 
Sbjct: 14  LVILVCALLLMIWGTYTAFNTDVDVFPDLNAPTVV-----------IMTEANGMAPEEVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   +          S     + + + F            V+  L  +   L 
Sbjct: 63  RLVTFPVETAVNGAMDVRRVRSSSTTGFSVVWVEFDWGTDIYRARQIVSEKLAVLGESLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            +  K  L   +     +++     D      ++           ++  +    Q     
Sbjct: 123 ENVGKPTLGPQSSILGEMMILGLTADST--SLLDLRTIADWTIRPRLLSTGGVAQVAVIG 180

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + +     DP+R++       ++       N +  G +                    
Sbjct: 181 GDIKEYQILLDPARMKHYGVGLNEVLDVCRNMNRNANGGVLY------------------ 222

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           E S  ++     +           +           ++    IG     +      T P 
Sbjct: 223 EFSNEYIIRGVLSTSKAEEIAQGVVKTVNEYPVTLGDIATVKIGGKSPKLGTASERTKPA 282

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   +       +   T +   I+  + +     + ++    R       S +  K +  
Sbjct: 283 VLITVTKQPDTSTEKLTEKLDEIVVDLRKNLPADVHVSTDIFRQSHFIDNSINNVKKSLF 342

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             +  V+IVLF+ ++  +  +++  ++ L++++++ +L  +G T+   S+ G+ + IG  
Sbjct: 343 EGSFFVVIVLFLFLMNIRTTVISLVALPLSLLVSIIVLHYMGLTINTMSLGGMAIAIGSL 402

Query: 428 VDSNILVNERIREENR--------KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VD  I+  E + +  R        + +S    +          I +S +  +++ V LFF
Sbjct: 403 VDDAIVDVENVYKRIRENRLLPPDQQRSTLEVVYDASREVRMPILNSTLIIVVSFVPLFF 462

Query: 480 FGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLI 534
             G   R      I   +++  S   A+++   +  +++  K   MK +    ++R   +
Sbjct: 463 LSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLNRKATGMKELREAWIARKLKV 522

Query: 535 PDCIAIQFMRARFWGV--GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               A++   A    V      LF +  +              +G   + V +   + L 
Sbjct: 523 VYKRALELALAYQKWVLGTTIALFVVALVIFFHLGRSFLPPFNEGSFTINVSSLPGISLD 582

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                    +   +             R +            +E   +            
Sbjct: 583 ESDQIGRRAEALLLQVPEIKTVARKTGRAELDEHALGVNVSEIEAPFELQDRSRDEVMND 642

Query: 653 NTEIVGPKISREL 665
             + +       +
Sbjct: 643 VRKKLSTISGANI 655



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 73/220 (33%), Gaps = 9/220 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-I 675
             V  Q          ++ E+V      +     +              I      +   
Sbjct: 285 ITVTKQPDTSTEKLTEKLDEIVVDLRKNLPADVHVSTDIFRQSHFIDNSINNVKKSLFEG 344

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S   +++           + ++  L L +  ++      G+  N  ++  +   IG  V+
Sbjct: 345 SFFVVIVLFLFLMNIRTTVISLVALPLSLLVSIIVLHYMGLTINTMSLGGMAIAIGSLVD 404

Query: 736 DKVV----VYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           D +V    VY R+R+N  L      S  +++  +  E     + +++   +S +P+    
Sbjct: 405 DAIVDVENVYKRIRENRLLPPDQQRSTLEVVYDASREVRMPILNSTLIIVVSFVPLFFLS 464

Query: 791 GS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G    ++    I     +  +   ++ +   +  ++ + +
Sbjct: 465 GMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLNRK 504



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 60/138 (43%), Gaps = 10/138 (7%)

Query: 697  ITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L L +    G     L   E ++ A+   ++L G +  + +++         L    
Sbjct: 893  VILLNLPLALIGGVIILWLTSGEISIPAIIGFISLFGIATRNGMLLISHY---THLRGEG 949

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAAS 810
            +  R+ + +   + L   + T++++ ++++P+A+     G+ I S  A  +  G++ +  
Sbjct: 950  MGLRESVIQGSLDRLNPILMTALSSALALIPLALNGDLPGNEIQSPMATVILGGLLTSTF 1009

Query: 811  SSIFIAAPILLFIYDWRA 828
             + FI  PI+  I +   
Sbjct: 1010 LNGFII-PIVYLIMNKNK 1026


>gi|119945110|ref|YP_942790.1| heavy metal efflux pump, CzcA family protein [Psychromonas
           ingrahamii 37]
 gi|119863714|gb|ABM03191.1| heavy metal efflux pump, CzcA family protein [Psychromonas
           ingrahamii 37]
          Length = 1042

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 62/592 (10%), Positives = 155/592 (26%), Gaps = 40/592 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   ++++ + I   G+         ++ +D  P       I                 
Sbjct: 11  KNRILVLLITAAIVAYGVFSV-----QKTPIDAIPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D+        +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLSVPGAKTVRGYSFFGDSYVYIIFDDNTDMYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    +  L    T                     E +         ++       
Sbjct: 117 VAPDLPEAARSALGPDATGVGWVFSY-ALVDKSGKYDLSELTSLQNWFLKFELQTVPGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     DP++LR       K++      N      +  +           
Sbjct: 176 EVATVGGMVKQYQVRVDPNKLRAYNLPLNKITNAIQQANQESGASVIEMGEAEYMVRTSG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    ++                    + +  +  G              P        
Sbjct: 236 YISSIADLKA------------------IPLQVNAQGTPLLLGDVATINLGPQMRRGITE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   +   +    I         L+         I           +   
Sbjct: 278 LNGEGEVVSGVIVMRFGENAQGVIAAVKDKLKTLQKSLPEGVEIIPTYDRSELINSAVQN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V++V    + + +  LV   S+ + + +   ++S  G    + S+ GI 
Sbjct: 338 LYYKLLEEFIVVILVCAAFLFHFRSSLVVLLSLPVGIFVAFIIMSWQGINANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           + IG  VD  I++ E + +   K    +++ +  +          +F S +    + + +
Sbjct: 398 IAIGAMVDGAIVMIENVHKHMEKTELTDENRWQVISKATLEVGPALFFSLLIITFSFLPV 457

Query: 478 FFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G + +     A T   ++  S   AI+++  +M + IR K +             +
Sbjct: 458 FALEGQSGKMFSPLAFTKTYAMAASAGLAITLIPVLMGYFIRGKVLPEHKNPLNRFLVAL 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              +    +R     +  + L  +     +   G  +      G  + +   
Sbjct: 518 YKPVLAFSLRFPLLAISFAFLVLLVGFYPVSKIGSEFIPPLDEGDLMYMPTT 569



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 66/157 (42%), Gaps = 2/157 (1%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + +L+     F +  +L  + +L + I       +  GI  N+ ++  +   IG  V+
Sbjct: 346 FIVVILVCAAFLFHFRSSLVVLLSLPVGIFVAFIIMSWQGINANIMSLGGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
             +V+ + + K+M+    +   R  +I K+  E      ++ +    S LP+    G   
Sbjct: 406 GAIVMIENVHKHMEKTELTDENRWQVISKATLEVGPALFFSLLIITFSFLPVFALEGQSG 465

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             F+ P+AF    A ++S  +A  ++  +  +  +  
Sbjct: 466 KMFS-PLAFTKTYAMAASAGLAITLIPVLMGYFIRGK 501



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 87/262 (33%), Gaps = 13/262 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   +   + LS V +         I  +N        V ++ +   S  +     + +
Sbjct: 780  PIVTPSKMNISLSDVANVYIEAGAPMIKTENARLNGWIFVDIENRDLGSYVEDAQRIVNE 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + I                 K +  L +  ++ V +  I +L+Y+  R +    L  ++T
Sbjct: 840  QVILPGGYSLVWSGQYEYMEKANARLAK--VIPVTLIIIVILLYMAFR-RVGEVLLILST 896

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT------- 752
            L   +   +      G  F++      + L G S+   V++   + ++++          
Sbjct: 897  LPFALMGGIWLMFFLGFNFSVAVGVGFIALAGVSIEIGVIMLLYLNQSLEAKKLQCLEHF 956

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
                 ++ + +     +   + T     + ++P+      G  V+   A PM  G++ A 
Sbjct: 957  NVNDLKEAVMEGAGLRVRPVMMTVAVVVMGLVPIMYGEGTGSEVMKRIATPMIGGMISAI 1016

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
              ++ I   +         +  
Sbjct: 1017 ILTLLILPAVYFQWKKISLRKQ 1038


>gi|320105432|ref|YP_004181022.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
 gi|319923953|gb|ADV81028.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
          Length = 1055

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 61/544 (11%), Positives = 154/544 (28%), Gaps = 39/544 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++   +I  +G           +  D FP+                         
Sbjct: 10  RPYTFIVAAILILVLGFSSIA-----TTPTDIFPNIDIPVVT---------IIWSYSGLP 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +  +S+ + + +              + I +SF      +    +V   +  +
Sbjct: 56  AKEMEQRVTTFSEFVMAVVNDVKAIDSQTTSGASVIKISFQPQVHIDAAMSQVGAAVNSI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++  +   + I+    + D +     E     + +   Q+     T+ 
Sbjct: 116 RFRMPPGVNPPWILRFSASTVPIIQLALSSDTLSES--EIYDYGLFRIRQQLTTVPGTLL 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  + D + L     T   ++      N +       V     +      
Sbjct: 174 PTPYGGVARQIMVDLDQNALLAKGLTPIDVTAAINAQNVTLPSGTAKVDAREYTVSTNSS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D + +                     D+    +     +     ++    +V  +   
Sbjct: 234 PVDALSL--------------------NDVPIKTVNGSLVYMRDVAHVRDGWSVQQNVAR 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                           +S    +      +    RA +                  S   
Sbjct: 274 ANGKPAALLAIMKTGSVSTLDIVNQIKNDVLPASRAAAPKGLKITELFDQSIFVKASIVG 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L  +++ + +   +  L+   SI L+++ ++ +LS +G T+   ++ G+ 
Sbjct: 334 VLREGVIAASLTALMILLFLGSWRSTLIIAISIPLSILSSIIVLSAMGETMNTMTLGGLA 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD   +  E I             L      A  T+  +    ++   V+F  G
Sbjct: 394 LAIGILVDDATVTIENIHRHMDDQPLREAVLIGASEIATPTLVSTLTICIVFVSVVFLTG 453

Query: 482 GG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                    A+ +  ++L S   + ++V  ++ F +  ++   I     ++       I 
Sbjct: 454 PAKFLFTPMALAVVFAMLASYVLSRTLVPVLVNFFLGAEQKHGIHEEEQAKSTSFFGRIN 513

Query: 540 IQFM 543
            +F 
Sbjct: 514 DRFN 517



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 80/203 (39%), Gaps = 8/203 (3%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
           +      +  +  VL   +    + + ++ + +  I        ++R+G++   ++A+ +
Sbjct: 290 VSTLDIVNQIKNDVLPASRAAAPKGLKITELFDQSIFVKASIVGVLREGVIAASLTALMI 349

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           L+++     W   L    ++ L I  ++   +  G   N   +  +   IG  V+D  V 
Sbjct: 350 LLFLG---SWRSTLIIAISIPLSILSSIIVLSAMGETMNTMTLGGLALAIGILVDDATVT 406

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
                +N+  +      R+ +    +E    ++ +++   I  + +    G     F  P
Sbjct: 407 I----ENIHRHMDDQPLREAVLIGASEIATPTLVSTLTICIVFVSVVFLTGPAKFLF-TP 461

Query: 801 MAFGIVVAASSSIFIAAPILLFI 823
           MA  +V A  +S  ++  ++  +
Sbjct: 462 MALAVVFAMLASYVLSRTLVPVL 484



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 89/282 (31%), Gaps = 6/282 (2%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                  +    ++           I+      + +   R     +      +  I  +  
Sbjct: 769  FWLDPKMGITYTVAAQTPQYNIDSINALQNTPIPIPTMRNRTEVLGNMATLTPAILPVVI 828

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
             + +G   F +    Q  D  +    +  + K+ +  +P  T          ++    R 
Sbjct: 829  NHHNGAPVFDIFANTQDSDLGSIASKVNKIVKEESAHLPPGTKIVVRGQVESMNEAFNRL 888

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            G+     + +  L+ +     W      I  L       +    L    FN+ ++   + 
Sbjct: 889  GLGLTFAALLVYLLMVVNYQSWLDPFIIICALPGAFCGIVWALFLTQTTFNVPSLMGAIM 948

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             IG +  + +++     +   L    ++  +    +    L   + T+ A  I +LPMA+
Sbjct: 949  SIGVATANSILLVTFANE---LREKGVAPLEAALTAGFTRLRPIIMTAFAMIIGMLPMAL 1005

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                GG      A  +  G+ VA  +++F    +   I+   
Sbjct: 1006 GIGEGGEQNAPLARAVIGGLGVATFATLFFVPLMFTLIHGRN 1047


>gi|319789047|ref|YP_004150680.1| acriflavin resistance protein [Thermovibrio ammonificans HB-1]
 gi|317113549|gb|ADU96039.1| acriflavin resistance protein [Thermovibrio ammonificans HB-1]
          Length = 1036

 Score =  127 bits (318), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 70/619 (11%), Positives = 178/619 (28%), Gaps = 58/619 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    ++ L   +C IG+L              FP A                  +   
Sbjct: 9   LKKPHGVLALLLFLCAIGVL-----GFKNIPRKFFPDANRPTV---------AVVTLYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +     + +  +   + +   + +T  F  S+  +  A  VT  L 
Sbjct: 55  ASAEDVASEVTTPIERRLKTIDQVRLVRSTSKDGVSVVTAEFKYSKSIDAAATDVTNQLS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ-RIDQIGISES 179
            V   L        ++  T+    +++      +     + Q  EI      +++    +
Sbjct: 115 RVLPYLPKGILPPQVLKVTDATNPVMVLAVYPKKGSHLTMAQVREIAENQIKNRLLNLPN 174

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       ++  E D  ++ QL  +  ++       N +         F+ + +G 
Sbjct: 175 VADVEVFGGFKREVEVEPDYLKMAQLKVSLNQLLKAIKENNENASAG-----FIINREGT 229

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             L           L                                   +    A    
Sbjct: 230 LVLKLKGKAERIEELRQIVVK-------------------PGVRLKDVAKVKWGHADNFS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                             +      IE+       L+     +   I  +        S+
Sbjct: 271 AYHGNGHRAIGISILRSEKGYELPAIESVMNYLPKLKKEFPQLNFEI-ADTQKWLIELSN 329

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                +      + L+V+F+ +   +  +V+  SI +  ++T+ L+   G    + ++  
Sbjct: 330 KNMLESLRDAIVMTLLVIFLFLANVRMLIVSFLSIPVTYLITVGLMWAFGFNFNIVTLTA 389

Query: 420 IVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+  D  ++V E I     +  + +  +   G       +     T ++  + + 
Sbjct: 390 VILALGMLTDDAVVVLENIERHYFELKKPIERAAAEGTKEVMLAVLSGTYTTVLMLLPIA 449

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS------------- 522
           F GG     +R  ++T+ +++++S   A++++      I++    K+             
Sbjct: 450 FVGGYVQKIMRPLSLTLIIALVVSYVVAVTLIPIAAPHILKKTPDKNWLERRIYDYFVKG 509

Query: 523 -IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
            +         L    +   +++A    +G  +        +             G + +
Sbjct: 510 AVYRLREFYASLTEPFLKRTWLKALAVVLGFFLFGITMKSVMPVIGRDLMPPMDTGIVIV 569

Query: 582 GVLANRPVDLSVVRSNLES 600
              A+    L      L  
Sbjct: 570 RAEADPNTSLEKSEEILTK 588



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 87/236 (36%), Gaps = 18/236 (7%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           ++   +       +F  + G  +  + +     +   +   +E V   + ++       N
Sbjct: 255 LKDVAKVKWGHADNFSAYHGNGHRAIGISILRSEKGYELPAIESVMNYLPKLKKEFPQLN 314

Query: 654 TEIVGPKIS------RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            EI   +        + ++      ++++ + + +++         + +  ++ +    T
Sbjct: 315 FEIADTQKWLIELSNKNMLESLRDAIVMTLLVIFLFLA---NVRMLIVSFLSIPVTYLIT 371

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +G    FG  FN+  + AV+  +G   +D VVV + +      +           +   E
Sbjct: 372 VGLMWAFGFNFNIVTLTAVILALGMLTDDAVVVLENI--ERHYFELKKPIERAAAEGTKE 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +   +  +    + +LP+A  GG    ++   ++ +   +VV    S  +A  ++
Sbjct: 430 VMLAVLSGTYTTVLMLLPIAFVGGYVQKIMRPLSLTLIIALVV----SYVVAVTLI 481



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 72/218 (33%), Gaps = 7/218 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +        Y    +   T +   V K   E+   +    +     K   E  ++ +  +
Sbjct: 812  QNLLNTIDVYGYRATAPTTFLQSQVNKLEKELKLPTGYGISHEGEIKQMNESFKRLMKAL 871

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +I  I +   +   F+ + + +  +  + L +        +      + +   ++ L G 
Sbjct: 872  VIGIIILYFSLVPAFESFAYPISILAAIPLALIGAAFSMLIAHKPQCMPSFMGMILLAGI 931

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPMAVW 789
             V + +++ D ++            +  I  SI       + T+ A     + +      
Sbjct: 932  IVKNSILLIDFIK---WARERGEPLQAAIINSIRVRTRPVLMTAFATSVGMLPIALGWAL 988

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G   +   A+    G+++    ++F    ++  I D +
Sbjct: 989  GLERLAPLAVVAIGGLILGTFLTLFFVPVLVSLIEDIK 1026


>gi|320107488|ref|YP_004183078.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
 gi|319926009|gb|ADV83084.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
          Length = 1064

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 71/579 (12%), Positives = 166/579 (28%), Gaps = 46/579 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+   ++  +G     P  + ++ +D FP+                  +V   
Sbjct: 8   LRRPYTFVVFSLLLFIVG-----PVAMLRTPVDIFPNINIPV-----------VSVVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             +   +  +  +  +   L + +              +   + F  S        +VT 
Sbjct: 52  AGLSPGELSDRIVLPFERNLTTTVNDIEHTESQTLTGVSVTKIFFRPSVNISQAVAQVTA 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q    +        L++  +   + ++    +   +     +           Q+   
Sbjct: 112 IAQTQLRQYPPGTTPPLVIQYSASSVPVLQLGLSGAGLSEQ--QLYDFGTNFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +             Q+  + + ++L+    + + +       N         +       
Sbjct: 170 QGASMPFPYGGKQRQVQVDINTAKLQAYGLSPSDVVNAVNAQNIILPAGDVKIGSTDYQV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                      ++                     +    +     +     N+       
Sbjct: 230 ETNSAPNSIAALNA--------------------LPIKTVNGATIYIRDVGNVRDGFPPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S    I         + A                    
Sbjct: 270 TNVVRVDGQRAALMTVQKTGDSSTLDIIANVRAQLPAIAAQLPAALKIKPISDQSVFVRA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S       I A L   ++ + +   +  ++   SI L+VI +L +LS LG T+ + ++
Sbjct: 330 AISGVVREALIAACLTAAMILIFLGSWRSTVIIAVSIPLSVICSLLMLSALGETINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     + + V  ++  G ++     F S I+  I  V +
Sbjct: 390 GGLALAVGILVDDATVEIENINRNLEEGKEVEQAILDGAAQIAVPAFVSTISICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI--NPLSRFF 532
           FF GG         A  +  ++L S F + +IV  M  ++++  +    +      + F 
Sbjct: 450 FFLGGVARYLFVPLAEAVVFAMLASYFLSRTIVPTMAKYLLKGHEHDRAESVGKSRNPFI 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY 571
                    F + R W  G+  L     +  LF     +
Sbjct: 510 RFQIMFEHSFEKLRNWYHGVLSLCLEYRLTFLFAIAAFW 548



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 80/197 (40%), Gaps = 7/197 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             L  +  ++   + +  I +  +        ++R+ ++   ++A  +LI++     W  
Sbjct: 302 AQLPAIAAQLPAALKIKPISDQSVFVRAAISGVVREALIAACLTAAMILIFLG---SWRS 358

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +    ++ L +  +L   +  G   N+  +  +   +G  V+D  V  + + +N++   
Sbjct: 359 TVIIAVSIPLSVICSLLMLSALGETINIMTLGGLALAVGILVDDATVEIENINRNLEE-- 416

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                   I     +    +  ++++  I  +PM   GG     F +P+A  +V A  +S
Sbjct: 417 -GKEVEQAILDGAAQIAVPAFVSTISICIVFVPMFFLGGVARYLF-VPLAEAVVFAMLAS 474

Query: 813 IFIAAPILLFIYDWRAK 829
            F++  I+  +  +  K
Sbjct: 475 YFLSRTIVPTMAKYLLK 491



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 80/250 (32%), Gaps = 10/250 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                        +       I     Q      N    +             +      +
Sbjct: 799  FPIATNGSNQQPQILRNLASIERGMEQGTVSHYNARSVIDIYGSVEGTDLATVATRIDAL 858

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRK---GIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
             +       + TEI+     + +       IVG++ S + +   I + F  W      IT
Sbjct: 859  VKDTNAHLPRGTEIIVRGQIQTMRTSFVGLIVGLLFSIVLVYALIVVNFQSWLDPFIIIT 918

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             L   +   +    L G   ++ A+   +  +G +  + ++V    ++ M+L    ++  
Sbjct: 919  ALPGALAGIVWLLFLTGTHISVPALTGAIMCVGVATANSILVVSFAKEQMEL---GLNSL 975

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            D    +        + T++A  I ++PMA+    GG         +  G+++A   ++  
Sbjct: 976  DAALSAGYTRFRPVIMTALAMMIGMVPMALGLGDGGEQNAPLGRAVIGGLLLATFGTLTF 1035

Query: 816  AAPILLFIYD 825
                  F++ 
Sbjct: 1036 VPVFFSFMHR 1045


>gi|209544839|ref|YP_002277068.1| acriflavin resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209532516|gb|ACI52453.1| acriflavin resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 1057

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 62/517 (11%), Positives = 146/517 (28%), Gaps = 38/517 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L  +I   G++ AL          + P+       + G  L          
Sbjct: 9   LRRPYTFVVLSILILLFGVMSALKTPTDVFPNIKIPAIA--VVWTYGGLL---------- 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             D+F    +  Y   + S ++            +  + + F       +    VT   Q
Sbjct: 57  -PDEFAARVMYNYEQGVTSTVEGIEHMESDSYYGRGIVKIFFQPGTDIGSAEADVTAISQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L       +++      + ++  +   D +     +       +    +      
Sbjct: 116 TVLMQLPEKIPAPMIMKLEASSVPVITLELTSDTMTPS--DLFKLAQIRVRTLLVTVPGA 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           I       +   +    D  +L+    +   +       N  +      +          
Sbjct: 174 IVPHPYGGMDAFVMFALDQKQLQAHHLSAMDVQNVLDKQNIVRPAGDQKIGPTDWMVATN 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  E+                     +I    +G    +      + +      + 
Sbjct: 234 AQPRSMEELG--------------------NIPIKRVGNSVIYMHDLGQVYRGGHPQTNL 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            ++        +     + S    +     L   L+          V     G    S  
Sbjct: 274 VLVKGRQAVIMVVMKSGEASTLDVVSGVKALIPRLQKVIPASAHISVLNDASGFVKDSII 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A L  +V+ + +   +  ++   SI L ++  +  L   G T+ + ++ G+
Sbjct: 334 DVLREMVTAAILTGLVVLLFLGSWRSTVIIATSIPLAILCAVIGLGWAGQTINVMTLGGL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   ++ E I       + +  ++    ++     F S     I  + LF  
Sbjct: 394 ALAVGILVDDATVMIENIDTHLEMGKELEVAIIDAANQIVIPTFVSTTCICIVWLPLFEL 453

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG         A  +  +++ S   + ++V  M  F+
Sbjct: 454 GGVAGWLFMPMAEAIIFAMIASFILSRTLVPTMAKFL 490



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 82/274 (29%), Gaps = 9/274 (3%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              I                     +   R  +  +   +L  +  G     N    K  
Sbjct: 220 DQKIGPTDWMVATNAQPRSMEELGNIPIKRVGNSVIYMHDLGQVYRGGHPQTNLVLVKGR 279

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-----G 672
              +        A T  +    K +   +      +  I     +   ++  I+      
Sbjct: 280 QAVIMVVMKSGEASTLDVVSGVKALIPRLQKVIPASAHISVLNDASGFVKDSIIDVLREM 339

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V  + +  L+ +     W   +   T++ L I   +      G   N+  +  +   +G 
Sbjct: 340 VTAAILTGLVVLLFLGSWRSTVIIATSIPLAILCAVIGLGWAGQTINVMTLGGLALAVGI 399

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D  V+ + +                I  + N+ +  +  ++    I  LP+   GG 
Sbjct: 400 LVDDATVMIENI---DTHLEMGKELEVAIIDAANQIVIPTFVSTTCICIVWLPLFELGGV 456

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               F  PMA  I+ A  +S  ++  ++  +  +
Sbjct: 457 AGWLFM-PMAEAIIFAMIASFILSRTLVPTMAKF 489



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 61/160 (38%), Gaps = 5/160 (3%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S + + + I + F  W      I+ L   +        L     ++ A+   +  +G
Sbjct: 899  LAVSIVLIYLLIVVNFQSWLDPFIIISALPGALAGIAWSLFLTHTHLSVPALTGAIMCMG 958

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + ++V    R+  +L     + +  ++      +   + T+ A  + ++PM++   
Sbjct: 959  TATANSILVVSYARE--RLEVHGDALKAALEAGYGR-IRPVLMTAAAMIVGMIPMSISNS 1015

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                     +  G++VA  S++     +   IY+  +   
Sbjct: 1016 QN-APLGKAVIGGLIVATISTLLFVPCVYAIIYNRSSSRK 1054


>gi|150008239|ref|YP_001302982.1| AcrB/AcrD/AcrF family protein cation efflux system protein
           [Parabacteroides distasonis ATCC 8503]
 gi|149936663|gb|ABR43360.1| cation efflux system protein, AcrB/AcrD/AcrF family protein
           [Parabacteroides distasonis ATCC 8503]
          Length = 1027

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 78/673 (11%), Positives = 199/673 (29%), Gaps = 48/673 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVN 67
           L  ++C + L+I        + +D FP       +           ++ E +    + V 
Sbjct: 14  LVILVCALLLMIWGTYTAFNTDVDVFPDLNAPTVV-----------IMTEANGMAPEEVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   +          S     + + + F            V+  L  +   L 
Sbjct: 63  RLVTFPVETAVNGAMDVRRVRSSSTTGFSVVWVEFDWGTDIYRARQIVSEKLAVLGESLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            +  K  L   +     +++     D      ++           ++  +    Q     
Sbjct: 123 ENVGKPTLGPQSSILGEMMILGLTADST--SLLDLRTIADWTIRPRLLSTGGVAQVAVIG 180

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + +     DP+R++       ++       N +  G +                    
Sbjct: 181 GDIKEYQILLDPARMKHYGVGLNEVLDVCRNMNRNANGGVLY------------------ 222

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           E S  ++     +           +           ++    IG     +      T P 
Sbjct: 223 EFSNEYIIRGVLSTSKAEEIAQGVVKTVNEYPVTLGDIATVKIGGKSPKLGTASERTKPA 282

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   +       +   T +   I+  + +     + ++    R       S +  K +  
Sbjct: 283 VLITVTKQPDTSTEKLTEKLDEIVVDLRKNLPADVHVSTDIFRQSHFIDNSINNVKKSLF 342

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             +  V+IVLF+ ++  +  +++  ++ L++++++ +L  +G T+   S+ G+ + IG  
Sbjct: 343 EGSFFVVIVLFLFLMNIRTTVISLVALPLSLLVSIIVLHYMGLTINTMSLGGMAIAIGSL 402

Query: 428 VDSNILVNERIREENR--------KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VD  I+  E + +  R        + +S    +          I +S +  +++ V LFF
Sbjct: 403 VDDAIVDVENVYKRIRENRLLPPDQQRSTLEVVYDASREVRMPILNSTLIIVVSFVPLFF 462

Query: 480 FGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLI 534
             G   R      I   +++  S   A+++   +  +++  K   MK +    ++R   +
Sbjct: 463 LSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLNRKATGMKELREAWIARKLKV 522

Query: 535 PDCIAIQFMRARFWGV--GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               A++   A    V      LF +  +              +G   + V +   + L 
Sbjct: 523 VYKRALELALAYQKWVLGTTIALFVVALVIFFHLGRSFLPPFNEGSFTINVSSLPGISLD 582

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                    +   +             R +            +E   +            
Sbjct: 583 ESDQIGRRAEALLLQVPEIKTVARKTGRAELDEHALGVNVSEIEAPFELQDRSRDEVMND 642

Query: 653 NTEIVGPKISREL 665
             + +       +
Sbjct: 643 VRKKLSTISGANI 655



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 73/220 (33%), Gaps = 9/220 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-I 675
             V  Q          ++ E+V      +     +              I      +   
Sbjct: 285 ITVTKQPDTSTEKLTEKLDEIVVDLRKNLPADVHVSTDIFRQSHFIDNSINNVKKSLFEG 344

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S   +++           + ++  L L +  ++      G+  N  ++  +   IG  V+
Sbjct: 345 SFFVVIVLFLFLMNIRTTVISLVALPLSLLVSIIVLHYMGLTINTMSLGGMAIAIGSLVD 404

Query: 736 DKVV----VYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           D +V    VY R+R+N  L      S  +++  +  E     + +++   +S +P+    
Sbjct: 405 DAIVDVENVYKRIRENRLLPPDQQRSTLEVVYDASREVRMPILNSTLIIVVSFVPLFFLS 464

Query: 791 GS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G    ++    I     +  +   ++ +   +  ++ + +
Sbjct: 465 GMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLNRK 504



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 60/138 (43%), Gaps = 10/138 (7%)

Query: 697  ITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L L +    G     L   E ++ A+   ++L G +  + +++         L    
Sbjct: 893  VILLNLPLALIGGVIILWLTSGEISIPAIIGFISLFGIATRNGMLLISHY---THLRGEG 949

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAAS 810
            +  R+ + +   + L   + T++++ ++++P+A+     G+ I S  A  +  G++ +  
Sbjct: 950  MGLRESVIQGSLDRLNPILMTALSSALALIPLALNGDLPGNEIQSPMATVILGGLLTSTF 1009

Query: 811  SSIFIAAPILLFIYDWRA 828
             + FI  PI+  I +   
Sbjct: 1010 LNGFII-PIVYLIMNKNK 1026


>gi|71907885|ref|YP_285472.1| heavy metal efflux pump CzcA [Dechloromonas aromatica RCB]
 gi|71847506|gb|AAZ47002.1| Heavy metal efflux pump CzcA [Dechloromonas aromatica RCB]
          Length = 1051

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 82/593 (13%), Positives = 172/593 (29%), Gaps = 44/593 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV+L ++   IG + A+     ++ +D  P       I          +       
Sbjct: 11  RNRFLVLLATLFITIGGIYAVL----RTPIDALPDLSDVQVI---------VYTEYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +    +         + + + F D         +V  +L   
Sbjct: 58  PQVVEDQVTYPLTTAMLSVPNSKVVRGFSFFGASFVYIIFEDGTDIYWARSRVLEYLNFA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S++      +L    T        +    D       E           Q+  +    +
Sbjct: 118 SSRMPKGVTPSLGPDATGVGWVYQYALLAKD---KTLAELRTIQDWYVRYQLSKAHGVAE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  +       DP +LR       K++      N    G +  +         +  
Sbjct: 175 VASIGGFVQTYQVTVDPVKLRAYNIPLMKVAQVIRDSNRDVGGRVVEMAETEYMVRGKGY 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  K ++                    + +   + G              P        +
Sbjct: 235 LRGKDDLD-------------------MLVVKSDKGTPVLIRDIARVELAPDERRGLTEL 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    I       A +  G                   +    
Sbjct: 276 NGEGEVVSGIAMARYGQNALEVIHNLKAKIAEIGPGLPAGVTIEAVYDRSELIHRAIDTL 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T    + +V +V F+ +L+ +  LVA   + + ++++   + LLG T  L S+ GI +
Sbjct: 336 KRTLLEESIIVALVCFVFLLHARSALVAILMLPVGILISFIAMRLLGMTSNLMSLGGIAI 395

Query: 423 GIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IG  +D+ I++ E   +          N     ++          +F S +   ++ + 
Sbjct: 396 AIGAMIDAAIVMIENAHKHLERLPEEHSNGDRVDAMLAACKEVGPALFFSLLIITVSFLP 455

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   S+  +   ++++V  +M+  IR K M             
Sbjct: 456 VFSLEGQEGRLFSPLAYTKTFSMAGAALLSVTLVPVLMLLFIRGKIMPEAKNPVNRFLIW 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           I   I    MR +   +  ++L  + SI      G  +      G  L + A+
Sbjct: 516 IYRPIIAGVMRWKKVTIVAALLTLVISIYPASQLGSEFMPTLNEGTLLYMPAS 568



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ +  +  +  R     AL AI  L + I  +     L G+  NL ++  +   IG
Sbjct: 343 SIIVALVCFVFLLHAR----SALVAILMLPVGILISFIAMRLLGMTSNLMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMR---KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             ++  +V+ +      + +    ++    D +  +  E      ++ +   +S LP+  
Sbjct: 399 AMIDAAIVMIENAHKHLERLPEEHSNGDRVDAMLAACKEVGPALFFSLLIITVSFLPVFS 458

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             G     F   A    F +  AA  S+ +   ++L     +
Sbjct: 459 LEGQEGRLFSPLAYTKTFSMAGAALLSVTLVPVLMLLFIRGK 500



 Score = 46.6 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 83/265 (31%), Gaps = 16/265 (6%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             VL        V    L  + +   +             +     D      V +  K  
Sbjct: 778  EVLIPTMDGAMVPLGQLAKVVVAKGAPSIRTENALLSAYIYVDIRDRDIGGYVADAKKAV 837

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
              ++   +    T     +     I K  + + ++ +++ + +++ F +    L  + ++
Sbjct: 838  AEQVKFPAGYYVTWSGQFEYMERAIEKMKIVIPVTLLSIFLLLYLNFRRITETLIVMLSV 897

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-----------DRMRKNMK 749
               +   +    L G   ++      + L G +    V++             + R   +
Sbjct: 898  PFALVGGIWLMWLLGYNLSVAVAVGFIALAGVAAETGVIMLIYLDHAWETVKTKCRAEGR 957

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                     + + +   E +   + T +A    +LP+      G  V+   A PM  G++
Sbjct: 958  E-PGVADLYEAVMEGAVERVRPKMMTVVAIMAGLLPIMWGTGTGSEVMSRIAAPMVGGMI 1016

Query: 807  VAASSSIFIAAPILLFIYDWRAKNA 831
             +   ++ +   I   +  WR +  
Sbjct: 1017 SSTVLTLAVIPAIYALVKQWRLQRG 1041


>gi|29832582|ref|NP_827216.1| cation/multidrug efflux protein [Streptomyces avermitilis MA-4680]
 gi|29609702|dbj|BAC73751.1| putative cation/multidrug efflux protein [Streptomyces avermitilis
           MA-4680]
          Length = 1053

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 65/516 (12%), Positives = 148/516 (28%), Gaps = 36/516 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  ++  + L       +PQ      P+        L            +  
Sbjct: 6   RFSLAQRALIGLMSIVALAFGA-IAIPQLKQQLLPTIELPMVSVLAP---------YQGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    ++    +        +  +    I  SF      + +   V   +  
Sbjct: 56  SPDVVEKQVVEPIEDNLEAVDGITGVTSTASEGNAVIRASFDYGNDTKQLVADVQQAVNR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L       ++  +T+   ++VL+  +           + ++ R  +  +       
Sbjct: 116 ARVQLPDAVDPQVIAGSTDDIPTVVLAVTSDKDQQ----ALADQLDRTVVPALKSIGGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q        +Q+    D  +  +   T+A +         +     F      D      
Sbjct: 172 QVTVDGVRDLQVTVTPDDKKAAKARVTSAAIGQALQAGGATVPAGSFD----EDGHNRTV 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V   +   G               +    +     G +         + +  A      
Sbjct: 228 QVGGGLTSLG---------------QIRDLMVMGGAGKKPVRLGDIATVEQEPAKADSLT 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     S     E        +R          V      A   S   
Sbjct: 273 RTDGRPSLAVNVTMDHDGSAVAISEAVKDKLPGMRKDLGSGATITVVSDQGPAVSKSIDG 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A+     ++V+ + +   +  LV   SI L+V+L L +L     +L + ++  + 
Sbjct: 333 LTTEGALGLLFAVLVILVFLASVRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALT 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD +I+V E IR      +    ++          +  S +T +   + +   G
Sbjct: 393 IAIGRVVDDSIVVLENIRRHLGYGEERQEAILRAVREVSGAVTSSTLTTVAVFLPIGLVG 452

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G        F++T+  ++L S+  ++++V  +  + 
Sbjct: 453 GMVGELFGSFSLTVTAALLASLLVSLTVVPVLSYWF 488



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 71/186 (38%), Gaps = 19/186 (10%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS---RELIRKGIVGVIISAIAMLIYIW 685
                V + +     ++   +TI      GP +S     L  +G +G++ + + +L+++ 
Sbjct: 294 AISEAVKDKLPGMRKDLGSGATITVVSDQGPAVSKSIDGLTTEGALGLLFAVLVILVFLA 353

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L    ++ L +   L       +  N+  + A+   IG  V+D +VV + +R
Sbjct: 354 ---SVRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIR 410

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
              +        ++ I +++ E  G    +++      LP+ + GG            G 
Sbjct: 411 ---RHLGYGEERQEAILRAVREVSGAVTSSTLTTVAVFLPIGLVGG----------MVGE 457

Query: 806 VVAASS 811
           +  + S
Sbjct: 458 LFGSFS 463



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 67/195 (34%), Gaps = 8/195 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                              V   ++ KI  +   +          +   +  +   + ++
Sbjct: 795 DGRRAATITARPTGDNTGAVSTKLQSKIDALKLPTGATAEIGGVSQDQDDAFKNLGLAML 854

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +   F+     L  + ++    T  +G     G    + A+  +L LIG  
Sbjct: 855 AAIAIVFMLLVATFRSLVQPLILLVSIPFAATGAIGLLVATGTPMGVPAMIGMLMLIGIV 914

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
           V + +V+ D + +  K         D + +     L   + T++A   ++LPMA+     
Sbjct: 915 VTNAIVLIDLINQYRKQ---GYGTVDAVIEGGRHRLRPILMTALATIFALLPMALGVTGE 971

Query: 790 GGSVIGSFAIPMAFG 804
           GG +    A+ +  G
Sbjct: 972 GGFIAQPLAVVVIGG 986



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 52/506 (10%), Positives = 132/506 (26%), Gaps = 60/506 (11%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L +    IG     P              +   +     +L+ G+ L      
Sbjct: 528 RRRLTSVLIAAAILIGTFGMAPLLKTNFFDQGEQEVLTVKQ-----ELKPGTSL----AA 578

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI----------- 111
            D     ++   D ++      G+  + +    +    +F                    
Sbjct: 579 TDAQAKKVEKMLDGVK------GVKDYQVTVGSSGFLAAFGGGTDTNQASYSVMLDDSAS 632

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
            + V   ++   +KL+      +          + +     D       +   +   Q  
Sbjct: 633 YEDVQNSVEEGLAKLSGIGTTTVSAGDGFGSQDLSVVVKAAD------ADVLRKASDQVR 686

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++   +            +     +   +          +         + +G   G  
Sbjct: 687 AEVAKLDDVTDVSSDMAQSVPRLSVRANDKAAAAGFDDTTLGAAVT---QAVRGTTSGKA 743

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
            L D++ +  +   K   +   L               V +    +   R        I 
Sbjct: 744 LLDDTERDIVIRSAKPAETSAQLRNLRLGAVKLGDIATVKLVDSPVSMTRIDGRRAATI- 802

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                                    A+ +G+ T   +  L + + A  LP          
Sbjct: 803 ------------------------TARPTGDNTGAVSTKLQSKIDALKLPTGATAEIGGV 838

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 +             +V ++L          L+   SI       + LL   G  
Sbjct: 839 SQDQDDAFKNLGLAMLAAIAIVFMLLVATFRSLVQPLILLVSIPFAATGAIGLLVATGTP 898

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           + +P++ G+++ IG+ V + I++ + I +  ++      ++  G       I  + +  +
Sbjct: 899 MGVPAMIGMLMLIGIVVTNAIVLIDLINQYRKQGYGTVDAVIEGGRHRLRPILMTALATI 958

Query: 472 IATVVLFFFGGGAVRGFAITMGLSIL 497
            A + +     G     A  + + ++
Sbjct: 959 FALLPMALGVTGEGGFIAQPLAVVVI 984


>gi|256378539|ref|YP_003102199.1| MMPL domain protein [Actinosynnema mirum DSM 43827]
 gi|255922842|gb|ACU38353.1| MMPL domain protein [Actinosynnema mirum DSM 43827]
          Length = 723

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 81/486 (16%), Positives = 158/486 (32%), Gaps = 56/486 (11%)

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            LV        + +   L  L  AT  L ++ G+ +GI    D  + V  R R E    +
Sbjct: 207 ALVGVGLGITGIQIATGLFELSAATPALSTMLGLAVGI----DYALFVVSRYRGELELGR 262

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
               +       A S +  + +T +IA   L   G G +    +    ++ I++   +S+
Sbjct: 263 DREEAAGRAIGTAGSAVVFAGLTVIIALAALTVTGLGFLAAMGVAAACTVAIAVLATLSL 322

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS------------- 553
           V A++ F  R  K             L      +  ++ R+  V +S             
Sbjct: 323 VPALLGFAGRAIKPARRRAGKAPATPLGERWARLV-VKHRWLAVVLSVAALTAIALPAAD 381

Query: 554 ----------ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS-----NL 598
                                      +G  F+G + + V A+   +    RS      L
Sbjct: 382 LRLALPDDGVAAVDSTQRKAYDQLAAGFGAGFQGPLTVVVEASADAEGVASRSGRAIAAL 441

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
           + +     +  N  G+   L  +      S A   ++  ++          ++  +  + 
Sbjct: 442 DDVAAVSPAVPNPAGDTALLTVIPLSAPTSEATEDLVHAIRDLPDPDGARLSVTGSTALD 501

Query: 659 PKISRELIRKGI--VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA---- 712
             +S  L    +  + V++    +L+ +  R      L A    +L I  + G       
Sbjct: 502 IDVSERLADALLPYLAVVVGLAFVLMLLVFR-SVLVPLKATLGFLLSIAASFGALVAVFQ 560

Query: 713 ------LFGIE-----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                 L G++      +L  +  V  L G +++ +V +  R R+    +    +  + +
Sbjct: 561 HGHLAGLIGLDSTGPIISLMPIFLVGILFGLAMDYEVFLVTRTREE---HVHGATPDEAV 617

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVI-GSFAIPMAFGIVVAASSSIFIAAPIL 820
              +     R V  +    ISV    V     I  S    +AFG+ V A        P +
Sbjct: 618 VTGMRH-GVRVVTAAALIMISVFAGFVLADDAIVKSLGFALAFGVAVDAFVVRMTLVPAV 676

Query: 821 LFIYDW 826
           L +   
Sbjct: 677 LSLLGR 682


>gi|154250019|ref|YP_001410844.1| protein-export membrane protein SecD [Fervidobacterium nodosum
           Rt17-B1]
 gi|154153955|gb|ABS61187.1| protein-export membrane protein SecD [Fervidobacterium nodosum
           Rt17-B1]
          Length = 474

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 118/488 (24%), Positives = 192/488 (39%), Gaps = 63/488 (12%)

Query: 42  NRISLGLDLRGGSHLVLEVDEDDFVNG---FLQMYSDELRSFLKKEGIGVFSM----RQI 94
           +RI LGLDL GG  L   VD +  V      +      LR+ L   G     +    R+ 
Sbjct: 38  SRIKLGLDLSGGVRLEYRVDIEKGVENPSAVVDDVWTVLRNRLDSAGYTEAVVKKSFREN 97

Query: 95  QNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ 154
            + I +   D+         V         +   +   +                     
Sbjct: 98  NSFIIVEIPDATDTSFAEKLVGSTGLLWFGQAIDERDYDPTTN----------------- 140

Query: 155 VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
                 +      R+        +     L    I  +        R+ + + T   +  
Sbjct: 141 -----PDDVNLATREGAQWYSDKDGKKWYLIKKEINNRKDLVLSGPRISEAVPT---VDQ 192

Query: 215 HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
             V               +  +   +  V ++V  SG                       
Sbjct: 193 KGVANYVVSFTLAREYVEVFKNITKELYVPEQVLNSGTTQYQMAL--------------- 237

Query: 275 DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
                            K LA+VLD +V     +   I  GK QI GNFT + A  LAA+
Sbjct: 238 ----------------KKRLAIVLDDKVQFVGFVVSPIEDGKGQIRGNFTFDEAKELAAI 281

Query: 335 LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
           LR+G+LP +L       V   LG D + +   A + G VL++++M+  YG    VA   I
Sbjct: 282 LRSGALPARLEKTSASLVSPLLGKDVLKQSLNAGLIGAVLVIIYMLAFYGVMSFVAVIGI 341

Query: 395 FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDM 454
           F  + L    L+  GA LTLP IAGI+  IG  VD NI++ ERI+EE R  ++   ++++
Sbjct: 342 FYALALIFGFLAGTGAILTLPGIAGIIFTIGTLVDGNIIIYERIKEEIRGGKTPKAAIEV 401

Query: 455 GFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            FSR++ T+FD+N+T +IA + L++FG G ++GFAIT  + I  +MF  +   + ++  +
Sbjct: 402 AFSRSFWTLFDANLTTIIAALFLYYFGTGTIKGFAITTIVGIFSAMFMNLVFSKFLLDAM 461

Query: 515 IRYKKMKS 522
               +++ 
Sbjct: 462 AGAIRVRK 469



 Score =  117 bits (293), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 30/168 (17%), Positives = 78/168 (46%), Gaps = 4/168 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +  +V P + ++++++ +   +I A+ ++IY+   +    +  A+  +   +    GF A
Sbjct: 295 SASLVSPLLGKDVLKQSLNAGLIGAVLVIIYMLAFYGV-MSFVAVIGIFYALALIFGFLA 353

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G    L  +A ++  IG  V+  +++Y+R+++ ++      + +  I+ + + +    
Sbjct: 354 GTGAILTLPGIAGIIFTIGTLVDGNIIIYERIKEEIRG---GKTPKAAIEVAFSRSFWTL 410

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              ++   I+ L +  +G   I  FAI    GI  A   ++  +  +L
Sbjct: 411 FDANLTTIIAALFLYYFGTGTIKGFAITTIVGIFSAMFMNLVFSKFLL 458


>gi|103487267|ref|YP_616828.1| acriflavin resistance protein [Sphingopyxis alaskensis RB2256]
 gi|98977344|gb|ABF53495.1| acriflavin resistance protein [Sphingopyxis alaskensis RB2256]
          Length = 1040

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 84/683 (12%), Positives = 188/683 (27%), Gaps = 56/683 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   +  + +++   G   AL     ++ +D  P                   + + V
Sbjct: 10  LENRAIVYAIAALLTAFGAWTAL-----RTPVDVLPDLTAPT-------------VTVVV 51

Query: 61  D----EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           D        V   + +  +   +          +       +TL F  +   E+    V 
Sbjct: 52  DAGGYTPTEVEQRVTIPLETALNGSPGLRRIRSNSATGLAVVTLEFDWATPPESARRIVA 111

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             LQ    +L  D     +   +     I+      +      ++           ++  
Sbjct: 112 ERLQTAGDELPADLPPPHMTPASSVMGEIMFVALRSNSA--SPMDLKSTADWIVRRRVMS 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                + L       Q+    DP+R+        ++       ++++             
Sbjct: 170 VPGIAEVLTIGGDERQVQLLVDPARMSARGIGMNQVIDAMSAASDNRSA----------- 218

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                     V  +G  L                 +  D  G         D        
Sbjct: 219 --------GVVVANGQELLVEGVGRAAVADDFGSVVVGDAGGVPVLAREIGDIRIGEGLK 270

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G     P +  AI       +   T     + A + R     + L     R      
Sbjct: 271 RGTGAFNGKPAVILAIQKQPGANTLELTDRLDTVFAELQRTLPDGMVLETRVFRQADFIQ 330

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S             LV +++F+ ++  +   VA  +I ++V+  + +++  G T+   +
Sbjct: 331 RSVDNVTTALIEGLVLVAVIVFIFLVSWRATAVALAAIPVSVVSAIIVINAGGGTINTMT 390

Query: 417 IAGIVLGIGLAVDSNILVNERIREE--------NRKNQSVFCSLDMGFSRAYSTIFDSNI 468
           + G+ + +G+ VD  I+V E +             + QS    +          I  + +
Sbjct: 391 LGGLAIALGMLVDDAIIVVENVVRRLRLERAKPTDEQQSDIAVVAAATGEVQGAIIFATL 450

Query: 469 TALIATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
             L+  + +F      G  ++  A+  G+S+L S+  A+++  A+   ++  +       
Sbjct: 451 IILLVFLPIFGLSGIEGRLLQPLALAYGVSLLASLAVALTLTPALSYDLLSRRPDDVGHE 510

Query: 526 NPLSRFFLIPDCIAIQFM--RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                         +     R R   VG  ++  +  I +            +G + + V
Sbjct: 511 PGWVIRMKAWYVALLDRWLDRWRVLAVGSMVMVVVAGIGIALAGRAFLPEFNEGSLTVNV 570

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                  L+        ++   +S            R    P         +E       
Sbjct: 571 TTLPGTSLADSDRAASEVEAALLSQPEVRTTARRTGRAPGDPHAQEVFASEIEASLNDEG 630

Query: 644 EIVPLSTIQNTEIVGPKISRELI 666
                      + VG     + I
Sbjct: 631 RDRDELLAALRDAVGTVPGVQAI 653



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/218 (9%), Positives = 74/218 (33%), Gaps = 9/218 (4%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           ++ Q          R+  +  +    +     ++          +  +      +I   +
Sbjct: 286 IQKQPGANTLELTDRLDTVFAELQRTLPDGMVLETRVFRQADFIQRSVDNVTTALIEGLV 345

Query: 679 AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + + ++I    W     A+  + + +   +      G   N   +  +   +G  V+D 
Sbjct: 346 LVAVIVFIFLVSWRATAVALAAIPVSVVSAIIVINAGGGTINTMTLGGLAIALGMLVDDA 405

Query: 738 VVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
           ++V + + + ++L     +        ++  +  E  G  ++ ++   +  LP+      
Sbjct: 406 IIVVENVVRRLRLERAKPTDEQQSDIAVVAAATGEVQGAIIFATLIILLVFLPIFGLSGI 465

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            G ++   A+     ++ + + ++ +   +   +   R
Sbjct: 466 EGRLLQPLALAYGVSLLASLAVALTLTPALSYDLLSRR 503



 Score = 47.8 bits (111), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 66/153 (43%), Gaps = 6/153 (3%)

Query: 674  IISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +I  + M + +   F+    AL  +  L L +   +    L G   ++  +   +TL G 
Sbjct: 868  LIVLVGMFLLLQQAFRSGRDALLVMINLPLALVGGVVGLWLTGGVLSVATIVGFITLFGI 927

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
            +  + V++   ++ +++         + + +   E L   + T+++A +++LP+A+    
Sbjct: 928  ATRNGVMMVTHIK-HLQAVEGVTDLAEAVRRGSEERLVPILMTAISAGLALLPLAIALGE 986

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             G  +    AI +  G+  +   ++ +   + L
Sbjct: 987  PGSEIQAPMAIVILCGLTSSTVLNMLVLPALYL 1019


>gi|319654737|ref|ZP_08008815.1| acriflavin resistance plasma membrane protein [Bacillus sp.
           2_A_57_CT2]
 gi|317393562|gb|EFV74322.1| acriflavin resistance plasma membrane protein [Bacillus sp.
           2_A_57_CT2]
          Length = 1027

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 67/634 (10%), Positives = 185/634 (29%), Gaps = 41/634 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  +I   G+         +  ++  P       +            V   
Sbjct: 9   LQNKLAVWLLTIIITVSGIYSG-----TRMNMETIPDVSIPYLM---------VMDVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   + +  ++    L+       +     + I + +      +     +   L 
Sbjct: 55  ATPEKVMEDVSIPIEKAVEGLEDVKSVYSNSYSNMSNIQVEYDYGIDMDEAKRALQSALD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L    ++  +   +   + +     +        +E +  +    + +I   +  
Sbjct: 115 TV--ELPEGAQEPSITAISMNMMPVAALSVSSKS--EDIVELTSTVEDIILPKIEKIDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                + + + ++    +  +L +L  T  K+       N +    ++        +G Q
Sbjct: 171 ASATITGQHVEEVQLTYNEEKLAELELTEDKVKEMIQASNMAVSLGLYE-----FEEGEQ 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +  D   ++   L                 ++        F +++       +  V   
Sbjct: 226 AVAVDGKFMTEDELKNMLIP-----------VTPTAQNQSPFVKLSDIAEIDTVGRVQSV 274

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          + Q +    + +   L        +   +  +          S S
Sbjct: 275 SRTNGNDAIAIQIVKEQQANTVEVVNSVKDL-IKEEKEKVEGLVIDLSLDQGKPIEESVS 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      + ++++ + +   K  +++  SI +++ + L LL+ +  TL + ++  I
Sbjct: 334 TMIEKAVFGGLIAVLIILLFLRDFKSTIISIVSIPVSIFMALLLLNWMNITLNIMTLGAI 393

Query: 421 VLGIGLAVDSNILVNERIREENR---KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            + IG  +D +I+V E I        +  +    +       +  I  S +  +     L
Sbjct: 394 TVAIGRVIDDSIVVVENIYRRLHLKEEKLTGRALIREATIEMFKPILSSTLVTVAVFAPL 453

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F GG        FA+TM  ++  S+  AI+IV A+  F+ R K               +
Sbjct: 454 IFVGGMVGELFMPFALTMTFALGASLLVAITIVPALSHFLFRKKLYSEKTEGSHKEAGKL 513

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                    ++    +  SI+  +     +    +          +  +      +   +
Sbjct: 514 SKWYKGILEKSLNHKIITSIIAVVLLAGSVALTPMIGFSFMGSEEEKVMYLTYTPEAGEL 573

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           +                  + + +     +  D 
Sbjct: 574 KDETLKNVEAVEEEMLKRDDIDIVQISVTEEADQ 607



 Score = 97.1 bits (239), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 95/241 (39%), Gaps = 3/241 (1%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + ++++       +    +   +  ++ Q  ++V     ++ + K+  E V    I  +
Sbjct: 262 IAEIDTVGRVQSVSRTNGNDAIAIQIVKEQQANTVEVVNSVKDLIKEEKEKVEGLVIDLS 321

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
              G  I   +       V    IA+LI +     +   + +I ++ + I   L      
Sbjct: 322 LDQGKPIEESVSTMIEKAVFGGLIAVLIILLFLRDFKSTIISIVSIPVSIFMALLLLNWM 381

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  ++D +VV + + + + L    ++ R LI ++  E     + 
Sbjct: 382 NITLNIMTLGAITVAIGRVIDDSIVVVENIYRRLHLKEEKLTGRALIREATIEMFKPILS 441

Query: 775 TSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +++       P+   G   G +   FA+ M F +  +   +I I   +  F++  +  + 
Sbjct: 442 STLVTVAVFAPLIFVGGMVGELFMPFALTMTFALGASLLVAITIVPALSHFLFRKKLYSE 501

Query: 832 R 832
           +
Sbjct: 502 K 502



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 89/241 (36%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L +++ G         +  +   +              +  +      +P        
Sbjct: 786  SELVTVKEGTTHNTLARSKGEYYATVSGTVKGDDISKATSKTDEAIDELDLPKGVTVGVA 845

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFALF 714
             V   ++    + G   ++ +   +   + + F+   A  AI  +L   +  +     + 
Sbjct: 846  GVQADMTETFTQLGA-AMLAAIAIVYFILVVTFREGVAPFAILFSLPFAVIGSFVGLLIA 904

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   +++ +  +L LIG  V + +V+ DR+   + +    +  R+ + ++    L   + 
Sbjct: 905  GETISVSVMMGLLMLIGIVVTNAIVLVDRI---IHMERDGLVMREAVLEAGATRLRPILM 961

Query: 775  TSMAAFISVLPMA---VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++A   +++P+A     GG +    AI +  G+  +   ++ I   +   +     KN 
Sbjct: 962  TAIATIGALIPLAIGSGGGGLISKGLAITVIGGLTSSTLLTLIIVPIVYEVLSKMFKKNR 1021

Query: 832  R 832
            R
Sbjct: 1022 R 1022


>gi|284041779|ref|YP_003392119.1| MMPL domain protein [Conexibacter woesei DSM 14684]
 gi|283946000|gb|ADB48744.1| MMPL domain protein [Conexibacter woesei DSM 14684]
          Length = 717

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 70/508 (13%), Positives = 163/508 (32%), Gaps = 56/508 (11%)

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA--- 427
              L++L  +        +   +    V  T AL+ +    L +      ++ +      
Sbjct: 194 LAALVILVFLFGSLLAASLPIVTALAAVAGTTALMVVGSHVLNVADFTPALMSLVGLGVG 253

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           +D  +L+  R R E   ++    +L +    A  ++  +  T +I  + L   G G ++G
Sbjct: 254 IDYALLIFSRYRSELLDDRDRDDALRIALDTAGRSVVFAAATVIIGLLGLIALGIGMLQG 313

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYK----KMKSIDINPLSRFFLIPDCIAIQFM 543
            A+ + L++L+++  +++++ AM+    +      + +++      R           F+
Sbjct: 314 IALGVSLTVLVTLIASLTLLPAMLSLFGKRIERSVRKRALKARAKERVEGERWRRWAAFV 373

Query: 544 RARFWGVGISILFSICSICLLFTHG------------------------LNYGIDFKGGI 579
           + R   V    +  +  + +  T                            +G  F G +
Sbjct: 374 QRRPLPVLAVSVSFLLLLAIPATDMRLGFADAGNDSPEKTSRQAYDLLAQGFGPGFNGPL 433

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +            + S L +             E   +  +   P          ++V 
Sbjct: 434 LVVSEGGGQAAADELASALRATPGVAAVQSPTLSENGDVATVIAMPDAKPQAEETQQLVT 493

Query: 640 KKITE--------IVPLSTIQNTEIVGPKISRELIRKG--IVGVIISAIAMLIYIWIRFK 689
           K   E              +          + E+ +K    VG+++   A+L+ +  R  
Sbjct: 494 KLRDEVLPPVAARTGATYLVGGPTAAADDFAHEVQQKLPLFVGIVVGLSALLLMVVFR-S 552

Query: 690 WYFALGAITTLILDITKTLGFFAL------FGIEFNL----TAVAAVLTLIGYSVNDKVV 739
               L A    +L I  +LG   L      FGI+ +       +     + G S++ +V 
Sbjct: 553 LLIPLKAAVLNLLSIGASLGVVTLVFQHGMFGIQESPVDSVIPILIFAIVFGLSMDYEVF 612

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
           +  RM +       +   R  + + + +T            +      +    ++  F +
Sbjct: 613 LISRMHEEW---ERTHDARHAVREGLAQTGRVITAAGAIMVVVFAAFMLSPDRMMKQFGL 669

Query: 800 PMAFGIVVAASSSIF-IAAPILLFIYDW 826
            +A  I+  A      +   I+     W
Sbjct: 670 GLAVAILFDALIIRCLVVPAIMRLFGRW 697



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 62/159 (38%), Gaps = 6/159 (3%)

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIGYSV- 734
             A++I +++      A   I T +  +  T     +     N+     A+++L+G  V 
Sbjct: 194 LAALVILVFLFGSLLAASLPIVTALAAVAGTTALMVVGSHVLNVADFTPALMSLVGLGVG 253

Query: 735 -NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            +  ++++ R R  +           +   +++      V+ +    I +L +   G  +
Sbjct: 254 IDYALLIFSRYRSELLDDRDRDDALRI---ALDTAGRSVVFAAATVIIGLLGLIALGIGM 310

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +   A+ ++  ++V   +S+ +   +L        ++ R
Sbjct: 311 LQGIALGVSLTVLVTLIASLTLLPAMLSLFGKRIERSVR 349


>gi|325921577|ref|ZP_08183423.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
 gi|325547949|gb|EGD18957.1| cation/multidrug efflux pump [Xanthomonas gardneri ATCC 19865]
          Length = 330

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 31/355 (8%), Positives = 75/355 (21%), Gaps = 35/355 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V++  ++  +G++        +  L   P+  P               +      
Sbjct: 10  RPVMAVVMSLLLIVLGVMS-----FTRLTLRELPAIDPPIV---------SVDVEYTGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + ++         R   + I++ F  SR  E  A+ V   +  V
Sbjct: 56  AAVVESRITQVLEDALAGIEGIETIEARSRNGSSDISIEFVQSRDVEAAANDVRDAVSRV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++    +   +         I+    +        ++ S    R  +D+    +   Q
Sbjct: 116 SDRMPDQARPPEISKVEADADPILWLNMSSS--TMDTLQLSDYAERYVVDRFSSLDGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                R    +    D  +L     T A +       N               +   +  
Sbjct: 174 VRIGGRQRYAMRIWLDRDQLAARELTVADVEAALQNENVELPAGSIESAQRDFTLRVERS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +                             G           +    A       
Sbjct: 234 YLKPED-------------------FAKLPLSKGEGGYVVRLGDVARVELTSAERRAYFQ 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                         +  +       A   A  ++          V          
Sbjct: 275 SNGVPNVGLGIVRNSTANALDVAREARAQAEEVQKSLPQGTNIFVAFDTTTFIDA 329


>gi|322436955|ref|YP_004219167.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
 gi|321164682|gb|ADW70387.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
          Length = 1070

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 72/551 (13%), Positives = 160/551 (29%), Gaps = 38/551 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L  +I  +G+  A+      +  D FP+      +++     G +   +E 
Sbjct: 8   LRRPYTFVVLSLLIFLLGIGSAI-----TAPKDIFPAINIP-VVTIVWTYSGLTPTEMEG 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                    L    +++               Q  + I + F      E    +VT  +Q
Sbjct: 62  RIVTVCERALTTTVNDIE-------HSESESYQGVSVIKVYFQPDVKIELAVAQVTSIVQ 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L        ++      + I+    +   +     +     +     ++   +  
Sbjct: 115 TILRTLPPGSFPPFIIKYDASTVPILQLSLSGQGLSES--DLYDLGLSFIRPRLSNVKGA 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
              L     + Q+  + DP+ +     + A +       N         +          
Sbjct: 173 SIPLPYGGKVRQIMVDADPNLMYAKHLSAADVGTAIAQQNLILPAGTARI---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N  P     + D+          F      + +  AV  + 
Sbjct: 223 ----------GDREYVVKLNSSPNEVSALNDLPIRAANGSVVFIKDVAQVEEGFAVQTNI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              S    ++        +  G  P                S S
Sbjct: 273 VRENGKRGALLTVLKNGATSTLDIVDGVKKNLPKVLGGLPPNLKVTPLFDQSIFVRESIS 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I A L  +++ + +   +  L+   SI L++  +L +L+ LG T+ + ++ G+
Sbjct: 333 EVAREATIAAALTGLMILLFLGSWRSTLIVCTSIPLSIATSLVILTALGETINVMTLGGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN---ITALIATVVL 477
            L +G+ VD   +  E       + + +  ++     +  +  F S        I  V+L
Sbjct: 393 ALAVGILVDDATVEIENTHRNMSEKKPLVRAILDSAQQVAAPAFVSTLSICIVFIPVVLL 452

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
                      A+ +  +++ S F + +IV  MM F++  +     D     +       
Sbjct: 453 TGAAKYLFTPLAMAVAFAMMASYFLSRTIVPTMMHFLLASEIRLYQDEGASEQEERESWV 512

Query: 538 IAIQFMRARFW 548
                   R +
Sbjct: 513 WRWHMKFDRQF 523



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 62/159 (38%), Gaps = 7/159 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            VG++ +   + + + + F  W   L  +  +    +  L    +    FN+ ++   +  
Sbjct: 891  VGIVFAIGLVYLLMAVNFQSWLDPLIILMAIPGAFSGILWMLFVTQTTFNVPSLMGTIMT 950

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG +  + +++   +  N +       F   ++      L   + T++A  I +LPMA+ 
Sbjct: 951  IGVATANSILMV--VFANDERIAGKNQFDAALNAGHTR-LRPVLMTALAMIIGMLPMALA 1007

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               GG         +  G++ A   ++FI   I   +  
Sbjct: 1008 LGEGGEQNAPLGRAVIGGLLFATVGTLFIVPVIYSLLKK 1046



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 56/165 (33%), Gaps = 3/165 (1%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                V + + K +  + P   +         +   +        I +A+  L+ +    
Sbjct: 295 DIVDGVKKNLPKVLGGLPPNLKVTPLFDQSIFVRESISEVAREATIAAALTGLMILLFLG 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   T++ L I  +L      G   N+  +  +   +G  V+D  V  +   +NM
Sbjct: 355 SWRSTLIVCTSIPLSIATSLVILTALGETINVMTLGGLALAVGILVDDATVEIENTHRNM 414

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
                       I  S  +    +  ++++  I  +P+ +  G+ 
Sbjct: 415 SEKK---PLVRAILDSAQQVAAPAFVSTLSICIVFIPVVLLTGAA 456


>gi|296115976|ref|ZP_06834599.1| putative multidrug resistance protein mdtB [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295977548|gb|EFG84303.1| putative multidrug resistance protein mdtB [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 1063

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 61/546 (11%), Positives = 155/546 (28%), Gaps = 38/546 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L  +I   G++  L     ++  D FP+                       
Sbjct: 9   LRRPYTFVVLSILIVVFGIMSVL-----RTPTDVFPNIRIPVV---------SVVWTYGG 54

Query: 61  DEDDFVNGFLQ-MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              +   G +   Y   + S ++       S    +  + + F           +VT   
Sbjct: 55  MLPEEFAGRIIYNYELMVTSTVEGIEHMESSSYYGRGIVNIYFQPGTDIGKAEAEVTAIS 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q V  +L  +    ++++     + ++  Q   D+      +     + +    +     
Sbjct: 115 QTVIKQLPENIPAPMVMSLDASSVPVLTLQVTSDRQTPS--DLFKLAMIRVRPLLVTVPG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            +       +   +    +  +L+    +   +       N         +         
Sbjct: 173 AVVPQAYGGMDSFVMVALNQQQLQAHHLSAMDVQNALRGQNIVLPAGDQKISATDWMVQT 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                   E+                     DI    +G    +      + +      +
Sbjct: 233 NATPRSMKELG--------------------DIPVKRVGNAVIYVHDVAEVYRGGHPQTN 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++      + +       S    +  A  L   ++    P     +          S 
Sbjct: 273 LVLVKGKQGVEIVVMKSGDASTLDVVAGAKALLPRIQKLLPPDVKVSILGDASVFVKDSI 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                     A L  +V+ + +   +  ++   SI L ++  +  L + G T+ + ++ G
Sbjct: 333 FDVVREMLTAAFLTGMVVLLFLGSWRPTVIIATSIPLAILCAIIGLHIAGQTINVMTLGG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   ++ E I       + +  ++    ++     F +     I  + LF 
Sbjct: 393 LALAVGILVDDATVMIENIDAHLEMGKELETAIIDAANQIVIPTFVATTCICIVWLPLFA 452

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G       + M  +I+ +M  +  + R ++  + +Y                 P    
Sbjct: 453 LSGV-AGWLFMPMAEAIIFAMIASFILSRTLVPTMAKYLLAGHSVAGHGDSHHCEPQHHK 511

Query: 540 IQFMRA 545
           +Q+ R 
Sbjct: 512 LQYPRR 517



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/161 (15%), Positives = 66/161 (40%), Gaps = 5/161 (3%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I G+++S + + + I + F  W      IT L   +        L     ++ A+   + 
Sbjct: 901  IFGLVVSVLLIYLLIVVNFQSWLDPFIIITALPGALAGIAWALFLTHTRLSVPALTGAIM 960

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G +  + ++V    R+  ++     + R  ++      +   + T++A  I ++PMA+
Sbjct: 961  CMGTATANSILVVSFARE--RIEEHGDALRAAVEAGYGR-IRPVLMTALAMVIGMVPMAM 1017

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                        +  G++VA  S++     +   +++  ++
Sbjct: 1018 SNSQN-APLGRAVIGGLLVATVSTLLFVPCVYAILHNRPSR 1057



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/155 (14%), Positives = 56/155 (36%), Gaps = 4/155 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +  + +  ++ +     W   +   T++ L I   +    + G   N+  +  +   +G
Sbjct: 339 MLTAAFLTGMVVLLFLGSWRPTVIIATSIPLAILCAIIGLHIAGQTINVMTLGGLALAVG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V+ + +                I  + N+ +  +   +    I  LP+    G
Sbjct: 399 ILVDDATVMIENI---DAHLEMGKELETAIIDAANQIVIPTFVATTCICIVWLPLFALSG 455

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                F  PMA  I+ A  +S  ++  ++  +  +
Sbjct: 456 VAGWLFM-PMAEAIIFAMIASFILSRTLVPTMAKY 489


>gi|209695986|ref|YP_002263916.1| integral membrane protein, putative multidrug resistance protein
           [Aliivibrio salmonicida LFI1238]
 gi|208009939|emb|CAQ80253.1| integral membrane protein, putative multidrug resistance protein
           [Aliivibrio salmonicida LFI1238]
          Length = 1042

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 75/621 (12%), Positives = 177/621 (28%), Gaps = 31/621 (4%)

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +     L    ++    ++          +    +TL F+     +   + V   +  
Sbjct: 56  SPEDSERLLVRPMEQELRSIEGIKEMTSVAGEGHGSVTLEFSVGTDLDKALNDVKDAVDL 115

Query: 122 VNSKLNVDPKKNLLVTTT-EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           V   L  +  +  +   T   E +++             I+ +    RQ  D++   +  
Sbjct: 116 VKPNLPEESDEPTVNEVTLAAEQAVLSVVLYGTVPERTTIQIA----RQLRDKLESYKQI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           ++   +      +    DP  L       A +     L N           + R S    
Sbjct: 172 LEVDIAGDRDDVVEIIVDPLLLESYGLDQAAIYNLIALNNRVVAAGFVDTGYGRFSIKVP 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            + E   ++                    +++     G +         + K        
Sbjct: 232 SVFESLKDV--------------------LELPIKVDGKQVVTFGDIATVRKAFRDPNSY 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIE--TAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
             L            ++  +   T+E   A +L A          L              
Sbjct: 272 ARLNGEKAIVLDIKKRSGENIIETVEIVKAVLLGAQELETWPNNLLIKYTWDESKDVKIM 331

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +  +        LV+IV+  ++      L+   SI  + +  L +LSL G T+ +  + 
Sbjct: 332 LNDLQNNILSAILLVVIVIIAVLGART-ALLVGISIPGSFLTGLLMLSLAGLTVNIVVLF 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +++ +G+ VD  I+V E      ++      +      R    I  S  T L A   L 
Sbjct: 391 SLIMAVGMLVDGAIVVTEYADRRMQEGAHRVIAYREAAQRMAWPIIASTATTLAAFAPLL 450

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F+    G  ++   +T+  ++  S+F A+  V  +     + +++     + L       
Sbjct: 451 FWPDTTGEFMKYLPLTLMATLTASLFMALLFVPVLGSLFGKPQQVLPEKRHKLQALSNGD 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              A    +  F  + I++      +CL     +  G  +       V         +  
Sbjct: 511 YSQATGITKLYFNTLSIALKHPFKILCLAVVFSIGIGFTYAKAGLGVVFFPEVDPPFLTV 570

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                  +          E    +    +      +T   + + +     +     ++ +
Sbjct: 571 KVRSHGDLSINEKDKIMVEVQNEILGMKELDSIYTRTGGDDEIGQIQITPIDWQYRRSVK 630

Query: 656 IVGPKISRELIRKGIVGVIIS 676
            +   +  +      + +  S
Sbjct: 631 EIIEDLRDKTENIAGIELEFS 651



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/251 (8%), Positives = 76/251 (30%), Gaps = 8/251 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V   + V    + +  ++ +  +   +    +   L   +    + +    +++ V 
Sbjct: 244 PIKVDGKQVVTFGDIATVRKAFRDPNSYARLNGEKAIVLDIKKRSGENIIETVEIVKAVL 303

Query: 640 KKITEIVPLSTI--QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
               E+                K  + ++      ++ + + ++I I        AL   
Sbjct: 304 LGAQELETWPNNLLIKYTWDESKDVKIMLNDLQNNILSAILLVVIVIIAVLGARTALLVG 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++       L   +L G+  N+  + +++  +G  V+  +VV +      +        
Sbjct: 364 ISIPGSFLTGLLMLSLAGLTVNIVVLFSLIMAVGMLVDGAIVVTE---YADRRMQEGAHR 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
                ++        + ++     +  P+  W    G  +    + +   +  +   ++ 
Sbjct: 421 VIAYREAAQRMAWPIIASTATTLAAFAPLLFWPDTTGEFMKYLPLTLMATLTASLFMALL 480

Query: 815 IAAPILLFIYD 825
               +      
Sbjct: 481 FVPVLGSLFGK 491



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 84/248 (33%), Gaps = 21/248 (8%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +N   +            + + ++ ++    D    +  L  +++ + E+     +   
Sbjct: 780  ITNFARIIPTHKQDTIHRIDGHRVLTVKADMSDGYNLSIELPNIERGLEELNFPKGVVFK 839

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                 +             +I+   M I +  +F  +Y A   ++ ++           +
Sbjct: 840  LRGQNEEQNNSAVFLQNAFLIALAVMAIILVTQFNSFYQAFLILSAVLFSTVGVFAGLLI 899

Query: 714  FGIEFNLTAV-AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F   F +      V++L G  VN+ +V+ D       L    I   D I ++  + L   
Sbjct: 900  FQRPFGIIMSGIGVISLAGIVVNNNIVLIDTYN---TLRKEGIEKVDAILQTGVQRLRPV 956

Query: 773  VYTSMAAFISVLPMAV------------WGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
            + T++   + ++PM +            +G          A  +A G+  A   ++ +  
Sbjct: 957  LLTTVTTILGLMPMVLEMNIDLLNQKVEFGAPSTQWWSQLATAVAGGLAFATVLTL-VLT 1015

Query: 818  PILLFIYD 825
            P LL +  
Sbjct: 1016 PCLLMLGR 1023


>gi|327482092|gb|AEA85402.1| cation efflux family protein [Pseudomonas stutzeri DSM 4166]
          Length = 1054

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 59/594 (9%), Positives = 146/594 (24%), Gaps = 58/594 (9%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----VN 67
            ++  +G+         +  +D  P                   + + V           
Sbjct: 16  VLLAVLGMAGVGVYSYQRLPIDAVPDITN-------------VQVQINVAVPGASPLETE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   + L          R    +IT+ F D          V+  LQ  +++L 
Sbjct: 63  QRVTFPIETAMAGLPHLRQTRSLSRSGFAQITVIFDDGTDLYFARQLVSERLQAASNELP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVIS------HAIEQSMEIIRQRIDQIGISESTI 181
              +  L   +T      + +     +            +           Q+       
Sbjct: 123 QGVEVTLGPISTGLGEIFLWTVEAEPEARRADGQPYTPTDLREIQDWIIKPQLRNVRGVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         +     DP R+     T  ++       N +           + S     
Sbjct: 183 EINTIGGFAKEYQVAPDPKRMAAYRITLEQLVVALERNNANVGAGFIERNGEQLSIRTPG 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                     +I     G           +G    +     
Sbjct: 243 QLGSPADIG--------------------NIVLSNAGGAPVRVRDIAEVGIGRELRSGAA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +     +       ++          I           + + 
Sbjct: 283 TDNGREVVLGTAFMLVGENSRSVSQAVAQRLEIINQNLPKGVSAITVYDRTDLVDKAIAT 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +      A LV+ VLF+ +   +  L+    I L+++ T   ++    +  L S+  + 
Sbjct: 343 VRKNLIEGAILVIAVLFLFLGNLRAALITAMVIPLSMLFTFTGMATNKVSANLMSLGALD 402

Query: 422 LGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIFDSNITAL 471
            GI   VD  +++ E                      F  +      A   +    +  +
Sbjct: 403 FGII--VDGAVVIVENAIRRLAHAQEKHGRILTRSERFHEVFAAAKEARRPLIYGQLIIM 460

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           +  + +F      G      A T+ +++L +M  +++ V A +   +  K  +  +    
Sbjct: 461 VVYLPIFALTGVEGKMFHPMAFTVVIALLGAMILSVTFVPAAVALFVTGKVQEKDNRLMR 520

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           +        +            G      + ++ ++           +G   L 
Sbjct: 521 AARNGYAPVLDWVMRHRTLVFSGAVASVLLSALLVMRMGSEFIPSLSEGDFALQ 574



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 695  GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            G +    +    T G  AL+   I  +++A    + L G +V + +V+   ++    L  
Sbjct: 909  GLVVFTGIPFALTGGILALWLRDIPLSISAGVGFIALSGVAVLNGLVMIAFIK---GLLE 965

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                  + + +     L   + T++ A +  +PMA+    G  V    A  +  GI+ + 
Sbjct: 966  EGRPLSEAVREGALVRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSST 1025

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
            + ++ +   +       R K  
Sbjct: 1026 ALTLLVLPALYYTALQRRMKRN 1047



 Score = 44.3 bits (102), Expect = 0.082,   Method: Composition-based stats.
 Identities = 39/255 (15%), Positives = 84/255 (32%), Gaps = 19/255 (7%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++  + IG         +    V L          +R +     +  EI+  +  +   
Sbjct: 266 RDIAEVGIGRELRSGAATDNGREVVLGTAFMLVGENSRSVSQAVAQRLEIINQNLPKGVS 325

Query: 656 IVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            +      +L+ K I  V       + + + +          AL     + L +  T   
Sbjct: 326 AITVYDRTDLVDKAIATVRKNLIEGAILVIAVLFLFLGNLRAALITAMVIPLSMLFTFTG 385

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MR------KNMKLYTTSISFRDLIDK 763
            A   +  NL ++ A+    G  V+  VV+ +  +R      +      T       +  
Sbjct: 386 MATNKVSANLMSLGAL--DFGIIVDGAVVIVENAIRRLAHAQEKHGRILTRSERFHEVFA 443

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPI 819
           +  E     +Y  +   +  LP+    G    +    A  +   ++ A   S+ F+ A +
Sbjct: 444 AAKEARRPLIYGQLIIMVVYLPIFALTGVEGKMFHPMAFTVVIALLGAMILSVTFVPAAV 503

Query: 820 LLFIYDW-RAKNARI 833
            LF+    + K+ R+
Sbjct: 504 ALFVTGKVQEKDNRL 518


>gi|85711083|ref|ZP_01042143.1| Co/Zn/Cd efflux system membrane component [Idiomarina baltica
           OS145]
 gi|85694996|gb|EAQ32934.1| Co/Zn/Cd efflux system membrane component [Idiomarina baltica
           OS145]
          Length = 1041

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 70/591 (11%), Positives = 163/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N + V+L ++I       A+ N    + +D  P       I                  
Sbjct: 11  SNRFFVLLATLILVGVGAFAVKN----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F +         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLSVPGAKTVRGYSFFGDSYVYVIFDEDTDAYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  + +  L    T      +           +  E           ++   E   +
Sbjct: 118 APTLPSNARPQLGPDATGVGWVYLY-ALVDRTGNHNLSELRSMQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP +LR      A +       N      +  +            
Sbjct: 177 VAALGGMVKQYQVKVDPEKLRAFDIPLAHIQNAIQRGNQEVGASVVEMAEAEYMVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   ++                    + +  DE G     +   D    P        +
Sbjct: 237 IDSVSDLE------------------SIPLGVDENGTPLLLKDVADVGVGPQMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   TI+        L++G       +      G    +    
Sbjct: 279 NGEGEAVGGIVVMRFGENAQKTIDGVKQKLEELKSGLPEGVDIVTVYDRSGLISDAVESL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +      +V  +  + + + +  LVA  S+ L ++    ++   G    + S+ GI +
Sbjct: 339 WKSLIEELAIVAFICVIFLFHVRSSLVAVISLPLGILTAFIVMYWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  +D  I++ E + +   K      + +  +    S     +F S +   ++ + +F
Sbjct: 399 AIGAMLDGAIVMIENMHKHMEKTPLTAENRWRVVAASASEVGPALFFSLLIITVSFMPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   A++++  +M + IR K                 
Sbjct: 459 TLEAQEGRMFSPLAFTKTYAMAASAALAVTVIPVLMGYFIRGKVTPEGKNPLNRLLIAGY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++     V  +++     +  +   G  +  D   G  + +   
Sbjct: 519 KPLLKGILKYPKTAVVGALVILAVGVWPIDKIGSEFIPDLDEGDLMYMPTT 569



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 85/263 (32%), Gaps = 16/263 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L     + + L+ V      L    I  +N        V ++     +  +  +  + +
Sbjct: 780  PLVTPNGQRISLADVADVYVELGPPAIKSENARLNGWTFVDIEGVDVGTYVEKAMKVVEQ 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +         T         +   +L    ++ + ++ I +L+Y+  R     A+  + T
Sbjct: 840  ELELPAGYSVTWSGQYEYMERAKEKLTY--VIPLTLAIIIVLLYMNFRNATEIAII-LGT 896

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRK------NMK 749
            L L +  ++    L    F++      + L G +V   +++         +         
Sbjct: 897  LPLALVGSIWLMYLLDYNFSVAVAVGFIALAGVTVEIGILMLTYLNQSYNEYEKSQLEHG 956

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
               T       + +     +   + T+++    +LP+      G  V+   A PM  G++
Sbjct: 957  KALTKEGLSLAVMEGAGLRVRPVMMTAVSTIAGLLPIMFSTGTGAEVVSRIAAPMVGGMI 1016

Query: 807  VAASSSIFIAAPILLFIYDWRAK 829
             A   ++ +   +         K
Sbjct: 1017 SAVILTLLVLPAVYYLWRKKDVK 1039



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 73/203 (35%), Gaps = 2/203 (0%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +       I+  N +GE    + +     ++      ++   +++   +P      T   
Sbjct: 267 VGPQMRRGIAELNGEGEAVGGIVVMRFGENAQKTIDGVKQKLEELKSGLPEGVDIVTVYD 326

Query: 658 GPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
              +  + +      +I     +  I +   F    +L A+ +L L I          GI
Sbjct: 327 RSGLISDAVESLWKSLIEELAIVAFICVIFLFHVRSSLVAVISLPLGILTAFIVMYWQGI 386

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYT 775
             N+ ++  +   IG  ++  +V+ + M K+M+    +   R  ++  S +E      ++
Sbjct: 387 NANIMSLGGIAIAIGAMLDGAIVMIENMHKHMEKTPLTAENRWRVVAASASEVGPALFFS 446

Query: 776 SMAAFISVLPMAVWGGSVIGSFA 798
            +   +S +P+          F+
Sbjct: 447 LLIITVSFMPVFTLEAQEGRMFS 469



 Score = 40.8 bits (93), Expect = 0.90,   Method: Composition-based stats.
 Identities = 47/554 (8%), Positives = 149/554 (26%), Gaps = 74/554 (13%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            ++     V+   +I  +G+            +D+  S           DL  G  + +  
Sbjct: 526  LKYPKTAVVGALVILAVGVW----------PIDKIGSEFIP-------DLDEGDLMYMPT 568

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                   G  +    EL     K    V  ++ +  KI                      
Sbjct: 569  TYPGLSIGKAR----ELLQQTDKLIKTVPEVKTVFGKI------------------GRAD 606

Query: 121  GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQ------SMEIIRQRIDQI 174
                   +   +  +    + +    ++   + + +   ++        +  I+ RID +
Sbjct: 607  TATDPAPLTMIETFIQLKPKDQWRDGMTTEKLKKELDALVKFPGLTNAWVYPIKTRIDML 666

Query: 175  --GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVL-------PNNSKKG 225
              GI      ++    +       Q    +   +  TA +   +V            ++ 
Sbjct: 667  STGIKTPVGIKVAGADLNEIQTIGQQLEAILDDVDGTASVYSERVAGGRYVKVDIEREQA 726

Query: 226  FMFGVRFLRDSDGNQYLVEDKVE---ISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
              +G+            +        I G+        +         ++    +     
Sbjct: 727  ARYGLNIEDVQQVVATAIGGMNVSETIEGLERYPINLRYPQDYRDSPEELKKLPLVTPNG 786

Query: 283  FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
              ++  ++      +    + +             +     T     +            
Sbjct: 787  QRISLADVADVYVELGPPAIKSENARLNGWTFVDIEGVDVGTYVEKAMKVVEQELELPAG 846

Query: 343  KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
                   +    +   + +      +   +++++L+M         +   ++ L ++ ++
Sbjct: 847  YSVTWSGQYEYMERAKEKLTY-VIPLTLAIIIVLLYMNFRNATEIAIILGTLPLALVGSI 905

Query: 403  ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF------------- 449
             L+ LL    ++    G +   G+ V+  IL+   + +   + +                
Sbjct: 906  WLMYLLDYNFSVAVAVGFIALAGVTVEIGILMLTYLNQSYNEYEKSQLEHGKALTKEGLS 965

Query: 450  CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISI 506
             ++  G       +  + ++ +   + + F    G   V   A  M   ++ ++   + +
Sbjct: 966  LAVMEGAGLRVRPVMMTAVSTIAGLLPIMFSTGTGAEVVSRIAAPMVGGMISAVILTLLV 1025

Query: 507  VRAMMIFIIRYKKM 520
            + A+     +    
Sbjct: 1026 LPAVYYLWRKKDVK 1039


>gi|78188939|ref|YP_379277.1| NolG efflux transporter [Chlorobium chlorochromatii CaD3]
 gi|78171138|gb|ABB28234.1| NolG efflux transporter [Chlorobium chlorochromatii CaD3]
          Length = 1036

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 72/589 (12%), Positives = 172/589 (29%), Gaps = 43/589 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +V+ ++++  +GL         Q   +  P   P               +V    
Sbjct: 9   KRPTLIVVFFTVLAILGLFS-----YRQLQYELLPKMTPPVV---------SISVVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   L    +E  S L+K      +  +  + +T+ F +S   E         +  
Sbjct: 55  SPSEVETSLTKPLEEAVSALEKISSISSTSTEGLSVVTIEFDNSADIEQSLQDAQRKINE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+  L  + K  ++      E+ ++          S   +    +  +   Q+       
Sbjct: 115 VSDLLPTEAKTPVISRFALDEVPVLRIGATSSLPDSEFYQM---LKDEVKPQLSSVAGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         ++    D  R++    T   +       N+            +       
Sbjct: 172 QVYLVGGREREIRVNLDLDRMQAYGLTVTDVVREVEKANSDFPTGAIEETERQFVVRLAG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  + +                                   +      +    
Sbjct: 232 KFRSLEELQALIIQATPEGN--------------------VQLRDIATVEDGFREITTLS 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L        +   ++  +           L+ + +  S       V +      L + +
Sbjct: 272 RLNGRESVGILIMKQSDANTVDVSRLVRASLSKIEQLYSNRNLRFSVAQDASTFTLDAVT 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +   LV  V+ + +   +  L+   SI  +++ T   + L   +L L ++  +
Sbjct: 332 AVQHDLLLAVLLVAFVMMLFLHSLRNSLIVLVSIPTSMVTTFIGMYLFDFSLNLMTLLSL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSL---DMGFSRAYSTIFDSNITALIATVVL 477
            L +G+ VD +I+V E I     K +    +             +I   ++   +   ++
Sbjct: 392 SLAVGVLVDDSIVVLENIYRHLEKGEEPRHAAIVGRNEIGFTALSITLVDVVVFLPLSLV 451

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM--KSIDINPLSRFFLIP 535
               G  +R FA+ M +S ++S+  + ++   +     R      K++       F    
Sbjct: 452 SGIVGNILREFAVVMVISTMVSLLVSFTLTPLLASRFSRLSAFTGKNVAERFALGFEERF 511

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
             +   ++R   W +   I   + ++ LL        +   GG  + V 
Sbjct: 512 HAMREFYLRLLGWSLRNPIKVFLSAMALLVASFSLLVMGVIGGEFISVS 560



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 90/264 (34%), Gaps = 6/264 (2%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                +     +         V L    +  +      +  +N +       ++  +P   
Sbjct: 766  YRNDVAMLSSMIFRTPEGDMVPLGQFATFEQERGYTQLQRKNRNNAVWVKAQVIDRPVGD 825

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            + Q     +   K    +P +     E    +        G+  ++  A   LI + +  
Sbjct: 826  IGQEIERIIADMKRNGTMPSTVSYAYESDLKQQRESNSTLGLSFMVAIAFVYLIMVALYD 885

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W++ +  + ++ L I   L   AL G   ++  +  ++ LIG    + +++ D +    
Sbjct: 886  SWFWPMVVMFSIPLAIIGALFSLALTGKSLSMFTLLGIIMLIGLVGKNAILLVDFIN--- 942

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGI 805
                  ++    I ++  E L   + T+      +LP+A+ G S        A+ +  G+
Sbjct: 943  NARAEGMALTTAITEAAKERLRPILMTTFTLIFGLLPIALSGSSGSEWKSGLAVALVGGL 1002

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
              +   ++ +   + ++      +
Sbjct: 1003 FSSMFLTLLVIPVVYVWFDRLHER 1026



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 78/236 (33%), Gaps = 12/236 (5%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            +R                       V +            V  +V+  +++I  L + +
Sbjct: 253 QLRDIATVEDGFREITTLSRLNGRESVGILIMKQSDANTVDVSRLVRASLSKIEQLYSNR 312

Query: 653 NTEIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
           N      + +       +  V     +   +   + +        +L  + ++   +  T
Sbjct: 313 NLRFSVAQDASTFTLDAVTAVQHDLLLAVLLVAFVMMLFLHSLRNSLIVLVSIPTSMVTT 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                LF    NL  + ++   +G  V+D +VV + +    +        R       NE
Sbjct: 373 FIGMYLFDFSLNLMTLLSLSLAVGVLVDDSIVVLENI---YRHLEKGEEPRHAAIVGRNE 429

Query: 768 TLGRSVYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
               ++  ++   +  LP+  V G  G+++  FA+ M    +V+   S F   P+L
Sbjct: 430 IGFTALSITLVDVVVFLPLSLVSGIVGNILREFAVVMVISTMVSLLVS-FTLTPLL 484


>gi|197123091|ref|YP_002135042.1| acriflavin resistance protein [Anaeromyxobacter sp. K]
 gi|196172940|gb|ACG73913.1| acriflavin resistance protein [Anaeromyxobacter sp. K]
          Length = 1044

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/464 (11%), Positives = 131/464 (28%), Gaps = 27/464 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                       V   +    ++  S +        S R+  + + + F  S        
Sbjct: 47  VTTTYPGASPSDVEETVTRPIEDAVSSIAGIDKVFSSSREDVSLVFIEFELSVPLGEAVQ 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +     +L +  +  ++         +++      Q      EQ  + +R R++Q
Sbjct: 107 NVRDKVGIAQGELPLGARAPVIAQYDVAAQPVLVFSAASGQDPIALREQLDDQVRPRLEQ 166

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   E             ++  +    RLR +      +       +    G        
Sbjct: 167 L---EGVAAVRIVGGAEPEVSVDLSRDRLRAVGLDPEAVFRRVQGEHLDLPGGKLPA--- 220

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                     E  + + G   +       P                          + K 
Sbjct: 221 -------GDGEVGIRVRGEFQDVDALRRMP---------VAAAQDGSLVRLGDVALVRKG 264

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                                 +A  +          L   L+A        +       
Sbjct: 265 AKEPKTLVRTDGVDAVAVEVVKQAGANSAAVANEVKRLLPELQAELGFRAQVL--VDQSE 322

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +             + ++++ + +L  +  +++  ++  +V+ TL ++  +G +L 
Sbjct: 323 IIEANAHEVWVAIFFGGAMAILIILLFLLDVRGTIISALALPTSVVGTLFVMYWMGFSLN 382

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             ++ G+ L IGL +D  ++V E I            +   G       +  +  T +  
Sbjct: 383 QLTLLGLSLAIGLLIDDAVVVRESITRRLEAGDPPAVAASRGTQEIALAVMATTFTLVAV 442

Query: 474 TVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            V + F     G   R F +T+ +++LIS+F A ++   +    
Sbjct: 443 FVPVAFMQGITGQFFRQFGLTITVAVLISLFVAFTLDPMLSARF 486



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 79/231 (34%), Gaps = 11/231 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            PV L+ +     S     I  Q  +   +   ++        A   +   V  +     
Sbjct: 774 GPVALAQLARLERSTSPAVIEHQRRERSISVWAQIAPGHDLGGAVQALRARVGARPLPAG 833

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                   +    +          + ++I+ + + I +  +F+ +      + +L L I 
Sbjct: 834 YGYIWDGMQKEQAESQA----NMGLALLIAVVFIFIVLASQFESFVHPFTIMLSLPLAIV 889

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +    L G   N+ ++  ++ L+G    + +++ D     ++           + +S 
Sbjct: 890 GAVLGLGLAGQTVNMGSLIGIILLMGLVTKNAILLVD---GALQHLREGDDPETAVRRSG 946

Query: 766 NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
              L   + TS A  + +LP A+    G       AI +  G+V +   ++
Sbjct: 947 PRRLRPILMTSGAMILGMLPTALGKGMGSEFRAPMAIAVIGGVVTSTMLTL 997



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 43/135 (31%), Gaps = 7/135 (5%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                + +   L   +  TL      G   N   +  +   IG  ++D VVV + +    
Sbjct: 352 DVRGTIISALALPTSVVGTLFVMYWMGFSLNQLTLLGLSLAIGLLIDDAVVVRESI---T 408

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +             +   E     + T+       +P+A      G     F + +   +
Sbjct: 409 RRLEAGDPPAVAASRGTQEIALAVMATTFTLVAVFVPVAFMQGITGQFFRQFGLTITVAV 468

Query: 806 VVAASSSIFIAAPIL 820
           +++   + F   P+L
Sbjct: 469 LISLFVA-FTLDPML 482


>gi|197295425|ref|YP_002153966.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
 gi|195944904|emb|CAR57513.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
          Length = 1079

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 78/634 (12%), Positives = 167/634 (26%), Gaps = 44/634 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G     P  L ++  D FP+                  +V   
Sbjct: 8   LRRPYTFVVLALLIFIAG-----PLALLRTPTDIFPNIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMAKRITSNYERALTSDVDDIEHIESQSLNGVSVVKVFFHPGADINRAIAQAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + D +     +           Q+   
Sbjct: 112 NAASILRILPPGTLPPNIITYNASTVPILQLGLSSDTLAEQ--QLYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + D   L+        +       N    G    +     + 
Sbjct: 170 QGAAVPLPFGGKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGTAKIGTHEYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     D+    +G    +     ++    A  
Sbjct: 230 QMNGSTQTVAAL--------------------NDLPVKTIGGNVVYVRDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S    I+    +   + AG          +        
Sbjct: 270 TNIVRVDGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGLPNTLRIAPLDDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   +I L V+ +L  LS+LG T+ + ++
Sbjct: 330 AVQGVVREALIAACLTALMILLFLGSWRATLIIAITIPLAVLTSLLALSVLGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I         +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLELGAPLEEAILTGAGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G         A  +  +++ S F + ++V  + + ++R K          +R    
Sbjct: 450 FLLTGVARYLFVPLAEAVIFAMIASYFFSRTLVPTLAMALMRAKGSGRPPRGAFARIARF 509

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +F   R     +                L            G      VD   +
Sbjct: 510 QAAFEHRFEAVRLRYRALLSAAIARRRRFAAAFLLACVASTGLYAFAGQDFFPSVDTGEI 569

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           R +L +     I       ++         P + 
Sbjct: 570 RLHLRAPTGTRIEETARLTDEVEAKIRSVIPANQ 603



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 59/152 (38%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    T+ L +  +L   ++ G   N+  +  +   +G
Sbjct: 338 ALIAACLTALMILLFLGSWRATLIIAITIPLAVLTSLLALSVLGQTINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +              + I     E    +  ++++  I  +PM +  G
Sbjct: 398 ILVDDATVAIENI---THHLELGAPLEEAILTGAGEIAVPTFVSTLSICIVFVPMFLLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  ++ A  +S F +  ++  +
Sbjct: 455 VARYLF-VPLAEAVIFAMIASYFFSRTLVPTL 485



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 57/154 (37%), Gaps = 7/154 (4%)

Query: 677  AIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
               + + + + F  W   L  +  L   +        +     ++ A+   +  IG +  
Sbjct: 906  ISLVYLLMVVNFQSWLDPLVIVGGLPASLAGIAWMLFVTRTTLSVPALTGTILCIGIATA 965

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGS 792
            + ++V +  R+ +        ++  +D   N      V T++A  I +LPMA+    GG 
Sbjct: 966  NSILVVNAARELLAAGAP--PWQAALDAGFNR-FRPVVMTALAMLIGMLPMALGLGDGGE 1022

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                    +  G+     S++     +  F++ W
Sbjct: 1023 QNAPLGRAVIGGLAFGTVSTLLFVPVLFGFVHAW 1056


>gi|119510919|ref|ZP_01630042.1| cation efflux system protein [Nodularia spumigena CCY9414]
 gi|119464447|gb|EAW45361.1| cation efflux system protein [Nodularia spumigena CCY9414]
          Length = 1007

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 64/565 (11%), Positives = 166/565 (29%), Gaps = 48/565 (8%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD-ELRSFLKK---EG 85
             LD  P   P               + ++ +        ++      + S +       
Sbjct: 1   MPLDVLPDFAPP-------------QVEIQTEAPGLAPEEIETLITLPIESAVNGTPGVE 47

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               +     + + + F  +         +T  LQ    KL    +   +   T    ++
Sbjct: 48  TVRSASAVGISVVKVIFNWNTDVYQARQLITERLQQAQQKLPEGIENPQISPITSPIATV 107

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +      + +    +E    + R   +++       Q +     + Q     +P++L+  
Sbjct: 108 LQYAFTSETLP--LMEVRRLVDRDITNRLLAVPGVSQVIAYGGDVRQYQVLVNPAKLQAF 165

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
             T  +++      N +  G                 +E   E+    +           
Sbjct: 166 NVTLDEVTAATREANVNAAGGFLINPDQELIIRGLGRIESIEELGKSAIT---------- 215

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
                                  ++     +      L        + + + Q       
Sbjct: 216 ----------SRNNTPVLLQDVADVRIGAGLKRGDGSLDGQPAVVVLINKQPQNDTPTVT 265

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +      + ++AG           R       +      +      +V I+L M ++  +
Sbjct: 266 KAIEQAMSEVKAGLPADVTVTETFRQENFITAAIQNVTSSLRDGIIIVCIILLMFLMNWR 325

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             ++   +I L+V++ + +L   G  +   ++ G+ + IG  VD +I+  E      R+N
Sbjct: 326 TAIITLSAIPLSVLIGMMILGWFGQGINTMTLGGLAVAIGSVVDDSIVDMENCYRGLRQN 385

Query: 446 Q------SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSI 496
           Q        F  +         ++  S +   +    +F      G       +   +SI
Sbjct: 386 QAAKNPVHPFKVVYDTSVAVRVSVIFSTVIIGVVFAPIFTLTGVEGRIFAPMGVAYLVSI 445

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
             S F A+++  A+   ++  +++ + D    +    +   +           + ++   
Sbjct: 446 FASTFVAMTLSPALCAILLANRQLPTDDTWVSALTQRLYRPLLSFATGFPKVILVVATAS 505

Query: 557 SICSICLLFTHGLNYGIDFKGGIQL 581
            I S+ +L T G  +  +F+    +
Sbjct: 506 LIASLVILPTLGRVFLPEFQESSLV 530



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 81/248 (32%), Gaps = 7/248 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G   +    N PV L  V        +              ++  +    D+   T+ +E
Sbjct: 210 GKSAITSRNNTPVLLQDVADVRIGAGLKRGDGSLDGQPAVVVLINKQPQNDTPTVTKAIE 269

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALG 695
               ++   +P                  I+     +    I + +I +     W  A+ 
Sbjct: 270 QAMSEVKAGLPADVTVTETFRQENFITAAIQNVTSSLRDGIIIVCIILLMFLMNWRTAII 329

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MRKNMKLY 751
            ++ + L +   +     FG   N   +  +   IG  V+D +V  +     +R+N    
Sbjct: 330 TLSAIPLSVLIGMMILGWFGQGINTMTLGGLAVAIGSVVDDSIVDMENCYRGLRQNQAAK 389

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
                F+ + D S+   +     T +   +   P+    G     FA PM    +V+  +
Sbjct: 390 NPVHPFKVVYDTSVAVRVSVIFST-VIIGVVFAPIFTLTGVEGRIFA-PMGVAYLVSIFA 447

Query: 812 SIFIAAPI 819
           S F+A  +
Sbjct: 448 STFVAMTL 455



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/236 (11%), Positives = 88/236 (37%), Gaps = 9/236 (3%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + + S+  G           + L+ +          + V E+  K    I   +      
Sbjct: 755 AQVASINYGTGPNTINRENVSRLIVVSANVSGRDLGSVVDEIQTKISQSIQLPTGYFIQY 814

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
               +  +      ++   I+ +A+ + ++   K   A+  +  + L +    G F++  
Sbjct: 815 GGQFESEQRATANLLLFGGIAFVAIAVLMYFAVKSVAAM-LMIMVNLPLALVGGIFSIAL 873

Query: 715 -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
            G   ++ ++   +TL G +  + +++ D            +  +++I +   E L   +
Sbjct: 874 GGGIISVASLVGFITLFGVATRNGLLLVDNYN---HKLAEGMPLKEVIFQGSMERLVAIL 930

Query: 774 YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            T++ + + ++P+ V    G  ++   A+ +  G+  + + ++ +   +      +
Sbjct: 931 MTALTSALGMVPLVVGTGAGKEILQPLAVVVLGGLFTSTALTLLVLPALYAQFGKF 986



 Score = 40.8 bits (93), Expect = 1.1,   Method: Composition-based stats.
 Identities = 51/521 (9%), Positives = 143/521 (27%), Gaps = 33/521 (6%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             ++     LIA    LP       P     + ++        + ++      D  N   
Sbjct: 497 VILVVATASLIASLVILPTLGRVFLPEFQESSLVN--------AMVLYPGSSLDATNQVG 548

Query: 71  QMYSDELR--SFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
               D L+     K   +         +   ++       E  A+ +      +      
Sbjct: 549 FALQDALKDDKRFKTVQLRSGRAPGDADAGGVNL-GHLDVELSAEGLQNREASIEKLRAE 607

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
             K   +  +    IS  + +       + A++     + +        E  +       
Sbjct: 608 FAKIPGVAPSIGGFISHRMDEVLSGVRSAIAVKIFGPDLPELRRLGSEIEDVMG------ 661

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV- 247
                    D   L  L            +  + +    +G+     S   +  +  +V 
Sbjct: 662 ---------DVPGLVDLQLEPQVPIRQVQIKFSREAAARYGLTVGNLSHTLETALNGRVV 712

Query: 248 --EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
              + G  L        P++   +  I    +      ++    +           +   
Sbjct: 713 SQVLEGQQLFDLVVWLQPESRNNLDIIRNLLVDTPTGQKIPLAQVASINYGTGPNTINRE 772

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
            V    + S         ++                        +       + ++    
Sbjct: 773 NVSRLIVVSANVSGRDLGSVVDEIQTKISQSIQLPTGYFIQYGGQFESEQRATANLLLFG 832

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
                  + ++++  V      L+   ++ L ++  +  ++L G  +++ S+ G +   G
Sbjct: 833 GIAFVA-IAVLMYFAVKSVAAMLMIMVNLPLALVGGIFSIALGGGIISVASLVGFITLFG 891

Query: 426 LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           +A  + +L+ +    +  +   +   +  G       I  + +T+ +  V L      G 
Sbjct: 892 VATRNGLLLVDNYNHKLAEGMPLKEVIFQGSMERLVAILMTALTSALGMVPLVVGTGAGK 951

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
             ++  A+ +   +  S    + ++ A+     ++   K I
Sbjct: 952 EILQPLAVVVLGGLFTSTALTLLVLPALYAQFGKFLIPKQI 992


>gi|324329099|gb|ADY24359.1| acriflavin resistance efflux permease [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 1026

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 64/603 (10%), Positives = 178/603 (29%), Gaps = 36/603 (5%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
            I+   I   G+ +          L+  P+                   V      + + 
Sbjct: 16  WIVTCFIIVFGIYVGF-----SMKLETIPNINEPVV---------NITTVYPGASPEAIL 61

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    ++  S L+       +  +  + I + +      E   +K+   + G++    
Sbjct: 62  SDVTEPIEKKVSNLEGVKNITSTSFEGASTIEIQYDFKTDMEKAENKIKEMVSGLH--FP 119

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                  +      ++ +++   ++        + S+   ++ +      E   +     
Sbjct: 120 EGVMNPDVARANFNDLPVMV--LSLTDNTKKIEDLSVLAQKEIMPAFEEVEGVSKVEIIG 177

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           +   ++  +    +L Q   +   ++ +           M                E  +
Sbjct: 178 KKNKEVEIKYKQDKLDQYALSAKDVTAYLKTIKTDMNLGM----------QVLDGKEKII 227

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           +++G   +       P      V  +               ++          R      
Sbjct: 228 KVNGNEDSFEKIKELPIPINLKVQNNNPNGRETSVALKEVADVNIVQKSQSVSRANGIEG 287

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           I        +  +    ++        L+     ++       +      S  +      
Sbjct: 288 I-GIQILQSSNGNTVNVVDGIKDKMKKLQQKHNSLEFVS-ILDSGEPIKESVGVMINKTL 345

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           + A   ++++ + +   K  ++A  SI ++++++L +L  L  TL L ++  + + IG  
Sbjct: 346 MGAAFAVLIILLFLRDIKSTIIAVISIPVSLVISLIMLKQLNMTLNLMTLGAMTVAIGRV 405

Query: 428 VDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG- 483
           +D +I+V E I        +  S    +    S  +S+I  S I  +   + L    G  
Sbjct: 406 IDDSIVVIENIYRRMTLTEEKLSGVNLIKAATSEMFSSIMSSTIVTIAVFLPLGLIDGPV 465

Query: 484 --AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
                 F +T+  ++L S+  +I++V  M   +++ K   +   +           +   
Sbjct: 466 GELFMPFGVTIVFALLASLVVSITVVPMMAHLMLKRKVEVTKKTSSSRVTNSYHAILNWS 525

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                      S LF      +        G      I            + +++++++ 
Sbjct: 526 LNHKLITFCLASALFIGSIFLIPSIGVSFIGSSGNKMILATYNPVPGATDNTIKNDVKNA 585

Query: 602 QIG 604
           +  
Sbjct: 586 EEY 588



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 94/240 (39%), Gaps = 3/240 (1%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +++  +Q      +    E   +  LQ   G++V     ++   KK+ +        +  
Sbjct: 268 ADVNIVQKSQSVSRANGIEGIGIQILQSSNGNTVNVVDGIKDKMKKLQQKHNSLEFVSIL 327

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
             G  I   +       ++ +A A+LI +         + A+ ++ + +  +L       
Sbjct: 328 DSGEPIKESVGVMINKTLMGAAFAVLIILLFLRDIKSTIIAVISIPVSLVISLIMLKQLN 387

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +  NL  + A+   IG  ++D +VV + + + M L    +S  +LI  + +E     + +
Sbjct: 388 MTLNLMTLGAMTVAIGRVIDDSIVVIENIYRRMTLTEEKLSGVNLIKAATSEMFSSIMSS 447

Query: 776 SMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++      LP+ +  G V      F + + F ++ +   SI +   +   +   + +  +
Sbjct: 448 TIVTIAVFLPLGLIDGPVGELFMPFGVTIVFALLASLVVSITVVPMMAHLMLKRKVEVTK 507



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 75/255 (29%), Gaps = 18/255 (7%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V     +  +   +     +     +     E       +           +      ++
Sbjct: 773  VELGEILSEAEADTPAFITKRNGDVYTKISAEITDKDVGKVTENIQKKIDELSVPSGVQV 832

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                    I  +           I      ++++    L  + I F   +AL      + 
Sbjct: 833  NVGGVTEQIDESFAQIGIAIGIAIVIVYFVLVVTFGGGLAPLAILFSLPYALIGSLLGL- 891

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                      +     +++ +   L LIG  V + VV+ DR    +K     I  R+ I 
Sbjct: 892  ---------LITNESISVSVMIGALMLIGIVVTNAVVLIDRA---IKNEQKGILLRESIL 939

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-----WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            ++    L   + T++A   ++ P+         G +     + +  G+  +   ++ I  
Sbjct: 940  EAGVTRLRPILMTAIATVGALSPLLFTENSDSSGLISKGLGVTVIGGLTSSTLLTLIIVP 999

Query: 818  PILLFIYDWRAKNAR 832
             +   +   + K  +
Sbjct: 1000 IVYESLMKLKYKWTK 1014


>gi|291458406|ref|ZP_06597796.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 and Heavy Metal
           Efflux families, permease protein [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291418939|gb|EFE92658.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 and Heavy Metal
           Efflux families, permease protein [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 1014

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 69/610 (11%), Positives = 163/610 (26%), Gaps = 48/610 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R      +    +   G +  L + L        P  +                     
Sbjct: 9   LRRPVTTFLAVLCLIFFGFMSILNSKLELMPDMNLPLILITTS--------------YPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V+  L    +E  + L        +  +  + + + +      +   D++   + 
Sbjct: 55  ASPTDVDKLLSKPIEEKVAALSDVKRYTSTSAENLSMVAVRYNYGTNMDKAYDQLKKKID 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  D K+   V     + S +      +   +        +      Q     S 
Sbjct: 115 ELKPSLPKDAKEPSYVEMNITDSSSMDLAVENNAQEN----MYNYVKNTISPQFEKLSSV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +     P +L Q     +K+S      + S      GV     S    
Sbjct: 171 ASVDLSGGRKQYVQIRLSPEKLEQYHLDLSKLSDIIKNADFSYPAGETGVGSQDLSVTTA 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              +    +                     ++          +      +   L      
Sbjct: 231 ADFDTVASLK--------------------ELPIITGNGDTIYLKDLATVRTALEKQSSI 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              S       A  L A +           V      +   S S
Sbjct: 271 GRYNGSDTVMLGLKKTQSESAVTLSRRAKKLIAEMEKEDP-NLKISVINDAADSIRDSLS 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   + + ++ +     K  L+   SI + ++  L  +  +G ++ + +++ +
Sbjct: 330 SVFQTMLMAVAISMAIILLFFGDWKASLIVGTSIPIAILGALIFMWAMGYSMNMITLSAL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQS-----VFCSLDMGFSRAYSTIFDSNITALIATV 475
           VLG+G+ VD++I+V E       K           +          ++F S +T  +  +
Sbjct: 390 VLGVGMMVDNSIVVLEACFRSIDKIGDSGDGERRQAAIRSVETVGGSVFGSTLTTCVVFL 449

Query: 476 VLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L F     G   +    T+   +L S+ +A++IV          +  K+     +    
Sbjct: 450 PLGFMKGISGQFFKPLGFTIVFCMLSSLISALTIVPLCYSIYRPKENEKAPAYRGIRALQ 509

Query: 533 LIPDCIAIQFMRARFWGVG-ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                +  + ++ +   V    +L  +                 +G + + +     + +
Sbjct: 510 EGYRNVIGRLLKHKLLVVITTILLLVLSIFLATKVKTELMPQTDEGIVSISITTKPGLRI 569

Query: 592 SVVRSNLESL 601
             +   L+  
Sbjct: 570 EELDKILKKA 579



 Score = 88.6 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 84/220 (38%), Gaps = 8/220 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                           A     + + + +        +  T  V  +   E      + + 
Sbjct: 797  DRKYQLTITADYTDKATKNTKKQLDEDVLSKYLDHDVSKTSSVSTQSMNEEFGALGLAIS 856

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I+   + + +  +F+   +++  +TT+   +  + GF  LF    ++ ++   L L+G  
Sbjct: 857  IAVFLVFVVMAAQFESMRYSIMVMTTIPFSLIGSFGFLWLFNATLSMNSLLGFLMLVGTV 916

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWG-- 790
            VN+ ++  D     +  Y   + F+D + ++    L   + T++   +S+LPM A +G  
Sbjct: 917  VNNGILYVD----TVNQYRGEMPFKDSLVEAGATRLRPILMTTLTTVLSMLPMAAAFGRN 972

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G V+   A+    G+  +   ++ +       +   + + 
Sbjct: 973  GEVMQGLALVDVGGLSASTILALLLLPVYYHLLSRKKERQ 1012



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 82/233 (35%), Gaps = 8/233 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           DL+ VR+ LE          +                    + + L    +K    + +S
Sbjct: 256 DLATVRTALEKQSSIGRYNGSDTVMLGLKKTQSESAVTLSRRAKKLIAEMEKEDPNLKIS 315

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I +           + +  ++ V IS   +L+       W  +L   T++ + I   L 
Sbjct: 316 VINDAADSIRDSLSSVFQTMLMAVAISMAIILL---FFGDWKASLIVGTSIPIAILGALI 372

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS--FRDLIDKSINE 767
           F    G   N+  ++A++  +G  V++ +VV +   +++     S     R    +S+  
Sbjct: 373 FMWAMGYSMNMITLSALVLGVGMMVDNSIVVLEACFRSIDKIGDSGDGERRQAAIRSVET 432

Query: 768 TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G    +++   +  LP+       G         + F ++ +  S++ I  
Sbjct: 433 VGGSVFGSTLTTCVVFLPLGFMKGISGQFFKPLGFTIVFCMLSSLISALTIVP 485


>gi|110835332|ref|YP_694191.1| cation efflux system protein [Alcanivorax borkumensis SK2]
 gi|110648443|emb|CAL17919.1| cation efflux system protein [Alcanivorax borkumensis SK2]
          Length = 1046

 Score =  127 bits (318), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 85/663 (12%), Positives = 192/663 (28%), Gaps = 41/663 (6%)

Query: 20  LIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED------DFVNGFLQMY 73
           +  +   LP   LD FP                 +++ ++V+ +      + V   +   
Sbjct: 24  IGVIGWQLPNLKLDAFPDV---------------TNVQVQVNTEAEGLAAEEVEQLITYP 68

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
            + +   L +        +   + +T+ F +          V   LQ     +       
Sbjct: 69  IEAVMYALPQVAEVRSISKTGLSIVTVVFEEGTDIYFARQLVFERLQAAREDIPDGVGTP 128

Query: 134 LL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            +   T+                   A++            +         L     + Q
Sbjct: 129 EMGPNTSGLGQVYQYLLTAEPGSNVDAMQLRSLNDWVVKLLLMPVGGVTDVLSYGGEVRQ 188

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
                +P+RL     +  ++       N +  G+        D    Q ++     +   
Sbjct: 189 YQVNVNPTRLLAYDLSLQQVMDAIAANNRNAGGW------YLDRGAEQLVIRGMGWVGSG 242

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                     P        +   ++    F    R            G       +   I
Sbjct: 243 EQGLGDIAAIPLKEVDGTQVRVSDVAKVEFGGEIRQGALTMTRRDASGEPEALGEVVAGI 302

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              +   +   TI+      A ++          V          + S       +    
Sbjct: 303 VLKRMGANTKATIDGIKEREARIQQALPDGVQFEVFYDQADLVEKAVSTVVTALLLAFVF 362

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           ++IVL + ++  +   +   SI L++ L L  ++ LG +  L S+ G+ + IG+ VD ++
Sbjct: 363 IVIVLALFLMNLRATALVLLSIPLSIGLALLAMASLGMSANLMSLGGLAVAIGMLVDGSV 422

Query: 433 LVNERIREENRKNQSVFCS-------LDMGFSRAYSTIFDSNITALIATVVLFFFGG--- 482
           ++ E I +   + +            +          +F +    L+  + LF F G   
Sbjct: 423 VMVENIFKHLSQKEGGHDQQGGIALRVKDAAQEVARPVFFAASIILVVFLPLFAFEGVEA 482

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 AI++ L++  ++  A+ +V A+  F+ R    +  +             +    
Sbjct: 483 KMFVPMAISIMLAMTAAVLVALIVVPALAGFLFRNGVEEKPNKLMRWLEARYRTLLGKAM 542

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
              +    G   LF++      F       +  +G + L V        S + + L+  Q
Sbjct: 543 QARKVVVGGAVGLFALALATTPFIGTEFVPVLEEGTLALRVTL---APSSSLDTALDVGQ 599

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             +     F      L R+         +      +   +  +    +  N   +  KI 
Sbjct: 600 KLEKEIMTFPEVTYALSRVGRAEIGGDPEPVSNVEIYIGLKPVDEWESASNRLELQEKIQ 659

Query: 663 REL 665
           ++L
Sbjct: 660 QKL 662



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 83/231 (35%), Gaps = 10/231 (4%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           GE    + L+    ++ A    ++  + +I + +P             +  + +   +  
Sbjct: 296 GEVVAGIVLKRMGANTKATIDGIKEREARIQQALPDGVQFEVFYDQADLVEKAVSTVVTA 355

Query: 673 VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++++ + ++I + +           + ++ L I   L   A  G+  NL ++  +   IG
Sbjct: 356 LLLAFVFIVIVLALFLMNLRATALVLLSIPLSIGLALLAMASLGMSANLMSLGGLAVAIG 415

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSIS----FRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             V+  VV+ + + K++                +  +  E      + +    +  LP+ 
Sbjct: 416 MLVDGSVVMVENIFKHLSQKEGGHDQQGGIALRVKDAAQEVARPVFFAASIILVVFLPLF 475

Query: 788 VWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDW--RAKNARI 833
            + G     F   AI +   +  A   ++ +   +  F++      K  ++
Sbjct: 476 AFEGVEAKMFVPMAISIMLAMTAAVLVALIVVPALAGFLFRNGVEEKPNKL 526



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 85/234 (36%), Gaps = 9/234 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++  + +     Q    +    V +Q         + V ++ +   +E+   +       
Sbjct: 810  DVADVSLVSGPPQISRDDVQRRVVIQANVAGRDMGSVVADIQQAIDSEVDLPAGYSVDIG 869

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-- 714
               +  +   ++  + V ++   + + ++  F    A  A+  + + +    G  AL   
Sbjct: 870  GQYENQQRAQQRLAMVVPVAVGLIALLLYFAFG-SVAQAALILVNVPLALIGGILALALS 928

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ +    +TL G +V + VV+ + +           +    I +     L   + 
Sbjct: 929  GQYLSVPSSVGFITLFGVAVLNGVVMVEAIN---HRLRDGEALETAIFEGAVSRLRPVLM 985

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T++ + + ++PM +    G  V    A+ +  G+V A + ++ +   +      
Sbjct: 986  TALTSMLGLIPMLLATGVGSEVQRPLAVVIVGGLVSATALTLLVLPSLYGVFSR 1039


>gi|303238881|ref|ZP_07325412.1| protein-export membrane protein SecD [Acetivibrio cellulolyticus
           CD2]
 gi|302593514|gb|EFL63231.1| protein-export membrane protein SecD [Acetivibrio cellulolyticus
           CD2]
          Length = 450

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 103/260 (39%), Gaps = 6/260 (2%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +G  +      R V   +     E +       +   G    +   +    DS A T+ 
Sbjct: 183 DEGAKKFEAATARLVGQPLAIFMDEQMIQAPTVDEKISGNSAIIRMGKAGGKDSDALTKE 242

Query: 635 LEMVKKKITEIVPLSTIQNTE--IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
              +   I        + + +   + P + +  +   ++  ++S I + +++ IR++   
Sbjct: 243 ATDLANTINAGALPFKLVSEDLNSISPTLGKSALNVILLAGLVSMILVGLFMLIRYRLP- 301

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            + A+  L+  I   +   +   +   L  +A ++  IG S++  V++Y+R+++ ++   
Sbjct: 302 GIVAVLALLFSIVAQIMIISYSHMSLTLPGIAGIILTIGMSLDGNVIIYERIKEEIRA-- 359

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              + +  I+             ++   I+ + +   G   I SFA  +A G+++   + 
Sbjct: 360 -GKTIQAAIEVGFKRAFTAIFDGNITILIAAVVLYTLGSGAIQSFAFTLALGVLLNFVTC 418

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + ++  +L  +  ++   ++
Sbjct: 419 VSMSRTMLQAVAGFKFAKSK 438



 Score =  111 bits (277), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 107/398 (26%), Positives = 203/398 (51%), Gaps = 25/398 (6%)

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRID-------QIGISESTIQRLGSHRILIQLP 194
            +  VL+           +E + +II  R++        + + ++  + +          
Sbjct: 52  GVRAVLTAPEGVNPTDDQMESARQIIENRLNYKKIYDKTLLLEKANKRIILEIPYQAGQS 111

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
            +QDP +    +G TA ++F +V             +  +++     L  DK+ + G  +
Sbjct: 112 IDQDPRKAINEIGMTALLTFREVD----------KTQINKETGDYLPLDGDKIILKGADI 161

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPS 314
             AT   +  T +  V ++  + GA++F   T   +G+PLA+ +D +++ AP +++ I  
Sbjct: 162 KKATPEANANTGEVYVALTLSDEGAKKFEAATARLVGQPLAIFMDEQMIQAPTVDEKISG 221

Query: 315 GKAQISGNFT--------IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
             A I              + A  LA  + AG+LP KL   +  ++   LG  ++     
Sbjct: 222 NSAIIRMGKAGGKDSDALTKEATDLANTINAGALPFKLVSEDLNSISPTLGKSALNVILL 281

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
           A +  ++L+ LFM++ Y   G+VA  ++  +++  + ++S    +LTLP IAGI+L IG+
Sbjct: 282 AGLVSMILVGLFMLIRYRLPGIVAVLALLFSIVAQIMIISYSHMSLTLPGIAGIILTIGM 341

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
           ++D N+++ ERI+EE R  +++  ++++GF RA++ IFD NIT LIA VVL+  G GA++
Sbjct: 342 SLDGNVIIYERIKEEIRAGKTIQAAIEVGFKRAFTAIFDGNITILIAAVVLYTLGSGAIQ 401

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            FA T+ L +L++  T +S+ R M+  +  +K  KS  
Sbjct: 402 SFAFTLALGVLLNFVTCVSMSRTMLQAVAGFKFAKSKW 439



 Score = 43.5 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/404 (9%), Positives = 99/404 (24%), Gaps = 24/404 (5%)

Query: 41  KNRISLGLDLRGGSHLVLEV-DEDDFVNGFLQMYSDELRSFLKKEGIGVFS--MRQIQNK 97
           +  I  G+D+RGG   VL   +  +  +  ++     + + L  + I   +  + +   +
Sbjct: 40  EESIRYGIDIRGGVRAVLTAPEGVNPTDDQMESARQIIENRLNYKKIYDKTLLLEKANKR 99

Query: 98  ITLSFAD------SRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN 151
           I L           +      +++ +           +  K  +   T   + +      
Sbjct: 100 IILEIPYQAGQSIDQDPRKAINEIGMTALLTFR----EVDKTQINKETGDYLPL------ 149

Query: 152 IDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAK 211
                   I      I++   +   +   +    +         E   +RL         
Sbjct: 150 ----DGDKIILKGADIKKATPEANANTGEVYVALTLSDEGAKKFEAATARLVGQPLAIFM 205

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
                  P   +K             G +       E + +           K     ++
Sbjct: 206 DEQMIQAPTVDEKISGNSAIIRMGKAGGKDSDALTKEATDLANTINAGALPFKLVSEDLN 265

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
                +G      +    +   + V L   +        A+ +    I     I +   +
Sbjct: 266 SISPTLGKSALNVILLAGLVSMILVGLFMLIRYRLPGIVAVLALLFSIVAQIMIISYSHM 325

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           +  L   +  I    +                     +   + +           G +  
Sbjct: 326 SLTLPGIAGIILTIGMSLDGNVIIYERIKEEIRAGKTIQAAIEVGFKRAFTAIFDGNITI 385

Query: 392 -FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
             +  +   L    +     TL L  +   V  + ++      V
Sbjct: 386 LIAAVVLYTLGSGAIQSFAFTLALGVLLNFVTCVSMSRTMLQAV 429


>gi|209885189|ref|YP_002289046.1| multidrug resistance protein MdtB [Oligotropha carboxidovorans OM5]
 gi|209873385|gb|ACI93181.1| multidrug resistance protein MdtB [Oligotropha carboxidovorans OM5]
          Length = 1049

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/596 (9%), Positives = 152/596 (25%), Gaps = 44/596 (7%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGFLQMYSDELRSFLKKEGIG 87
             +   P                   +   L     D     L    +     +      
Sbjct: 32  MPVSSLPQVDFPT-----------VQVTTRLPGASPDVAASLLTAPLERQLGQIPSLSSM 80

Query: 88  VFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVL 147
             +     ++I+L F  +R  +     V   +      L  +              + V+
Sbjct: 81  TSTSSFGVSQISLQFDLNRDIDGATQDVQAAINAAAGVLPKNLPYPPTYAKVNPADAPVM 140

Query: 148 SQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLG 207
           +   +          S         ++       +      +   +  + D +RL     
Sbjct: 141 T-LALTSDTISVRAMSDLADSLMAQRLAQITGVGRVSVLGGLKPAVRVQADLARLAAYGI 199

Query: 208 TTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHK 267
               +              + G +   D     Y +    ++ G                
Sbjct: 200 GMEDLRAAI------AGANVSGPKGSLDGKQQAYTIAANDQLIGAEAYKDVIIAYRNNAP 253

Query: 268 PVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIET 327
             V                   +   L     G               +   +    +E 
Sbjct: 254 VTV--------------GDVSELVDGLENDKTGGWYKNKPAVIIDIQRQPGANVIDVVEQ 299

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
                  L+          +          S    + T  +   LV +V+ + +   +  
Sbjct: 300 IRKEIPKLQQAIPAGVTLTIVSDRTVTIRASVHDVQFTLVLSVILVTLVVLLFLRSIRAT 359

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           ++A  ++ L++I +  ++   G +L   S+  + +G G  VD  I++ E I       ++
Sbjct: 360 IIAGVALPLSLITSFGVMWFAGFSLDNLSLMALTVGTGFVVDDAIVMIENIVRHMENGET 419

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAI 504
                  G      T+    ++ +   + L F     G   R FA+T+ ++++ S   ++
Sbjct: 420 AMEGALRGAREIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIAVITSAVVSL 479

Query: 505 SIVRAMMIFI-------IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           ++   M   +            ++++              + +     R     + +   
Sbjct: 480 TLTPMMCSRLLKRHGEEWEVPGLRAVSDFIDRSIEFYHRTLLVVLAHQRLTLFVVFLTVI 539

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
             +   +        +     I     A + V  + ++    ++     S  +  G
Sbjct: 540 ATTALYVIAPKGFLPLQDTASIVAVTEAGQDVSFAEMQVRQTAVSNAIQSDPDVTG 595



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/142 (12%), Positives = 51/142 (35%), Gaps = 6/142 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 + A   L L +  + G     G   +  ++ A+    G+ V+D +V+ + +   
Sbjct: 354 RSIRATIIAGVALPLSLITSFGVMWFAGFSLDNLSLMALTVGTGFVVDDAIVMIENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           ++      +  +   +   E     +  +++     +P+    G V      FA+ +   
Sbjct: 411 VRHMENGETAMEGALRGAREIGFTVISLTVSLIAVFIPLLFMSGLVGRMFREFALTLTIA 470

Query: 805 IVVAASSSIFIAAPILLFIYDW 826
           ++ +A  S+ +   +   +   
Sbjct: 471 VITSAVVSLTLTPMMCSRLLKR 492



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/206 (13%), Positives = 75/206 (36%), Gaps = 8/206 (3%)

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
             A    ++ + +   +I     I              +      +I + + + I + + +
Sbjct: 823  EALGDAVDALHRIEKQIGMPGNITGLYSGDAAEFARSLAGQPWLIIAAIVTIYIVLGVLY 882

Query: 689  KWYFALGAITTLILD--ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            + Y     I + +    +   L    L G + ++  +  ++ L+G    + +++ D   +
Sbjct: 883  ESYIHPITILSTLPSAGVGAILALM-LCGQDLSVIGLIGIILLMGIVKKNAIMMIDFALE 941

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
                    +S  D I K+        + T++AA    LP+A+    G  +     + +  
Sbjct: 942  --AERHEGLSAYDAIVKACLLRFRPIMMTTLAALFGALPLALETGTGSELRFPLGVSIVG 999

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAK 829
            G++V+   +++    I L +     +
Sbjct: 1000 GLIVSQILTLYTTPVIYLALDRINRR 1025


>gi|118602397|ref|YP_903612.1| acriflavin resistance protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567336|gb|ABL02141.1| acriflavin resistance protein [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 1017

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 79/616 (12%), Positives = 188/616 (30%), Gaps = 43/616 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           +     ++    I  +GLL      L     D+FP+   +              +V    
Sbjct: 10  KQKKLALVFTVFIIALGLLT-----LSGIQRDKFPAVDFEE-----------MSIVTIYP 53

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF-ADSRFKENIADKVTLF 118
               + V   +    ++    +        + ++ ++ I ++   D    E++  ++   
Sbjct: 54  GASPEDVEQNVTNPIEDELRSISGIDKFNSTSKEGKSSIIVTLSQDISDIESLKQEIRNA 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  + S          ++       SI+    +  ++   A+    +I     + + + E
Sbjct: 114 VSRIKSLPEEVNDLPWVIDRKNSLKSILKINISSGELSYQAL---RDITDDMANSLALVE 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              + +    +  ++  + +P  L Q   +  ++       N                  
Sbjct: 171 GVSKVVKEGYLDREIQIKVNPDSLYQHKLSLPQIIEAIKKRNKRYAVGSNHD-------- 222

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
             Y+ E  + +              +       I                +I        
Sbjct: 223 --YINEKTIVV---------LAKFDEIQAVGNVIIKSTFDGPIIRLKDVASIVDGNKEET 271

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               +            +       T++        LR                      
Sbjct: 272 SITRVNGTKGFILKIRKQENADIITTVDLIKEKVLNLRVKYPTNLQVFYSSDESKHVRNR 331

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +I      I   LVLI+L + +   K       S+ ++++ T+ LL   G T+ L S+A
Sbjct: 332 LNIVINNGLIGLFLVLIILALFL-SLKTAFWVSISLPISLLGTVTLLGATGETINLISLA 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            ++L +G+ VD +I++ E I    +  +  + S   GF R  + +  + +T ++A   +F
Sbjct: 391 AMILVLGIVVDDSIVMAESIHHYKQLGKDRYQSTVRGFKRVIAPVITTILTTILAFSSMF 450

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
             GG   +   +   + I     + + I  A+   +    + K+      +      +  
Sbjct: 451 LMGGTMGKFIYVIPLVVIFALTLSFLEISLALPAHLASSDE-KTKGKIWFACIEDWFEGF 509

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
             + ++ R+  V I  L  I ++    T          G   +       V  S+ R+  
Sbjct: 510 LTKVLKWRYGVVVIFSLVLIGTLYFAKTQMKYVQFPSVGADSISARLQMSVGTSLERTES 569

Query: 599 ESLQIGDISFQNFDGE 614
            S Q+  +  +    +
Sbjct: 570 ISKQVEKMIIEVVGED 585



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 103/295 (34%), Gaps = 8/295 (2%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I+ ++ R     +       +   +        I   G + +    + P+      +++ 
Sbjct: 205 IEAIKKRNKRYAVGSNHDYINEKTIVVLAKFDEIQAVGNVIIKSTFDGPIIRLKDVASIV 264

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
                + S    +G K F+++++ Q    +  T  ++++K+K+  +              
Sbjct: 265 DGNKEETSITRVNGTKGFILKIRKQENADIITT--VDLIKEKVLNLRVKYPTNLQVFYSS 322

Query: 660 KISRELIRKGIVGV---IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
             S+ +  +  + +   +I    +LI + +      A     +L + +  T+      G 
Sbjct: 323 DESKHVRNRLNIVINNGLIGLFLVLIILALFLSLKTAFWVSISLPISLLGTVTLLGATGE 382

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             NL ++AA++ ++G  V+D +V+ + +                  +     +   + T 
Sbjct: 383 TINLISLAAMILVLGIVVDDSIVMAESIH---HYKQLGKDRYQSTVRGFKRVIAPVITTI 439

Query: 777 MAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +   ++   M + GG++     +     I     S + I+  +   +     K  
Sbjct: 440 LTTILAFSSMFLMGGTMGKFIYVIPLVVIFALTLSFLEISLALPAHLASSDEKTK 494



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 54/137 (39%), Gaps = 3/137 (2%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   +  +  +   I   +  F   G   +  A+   L L+G  VND +V+   +    
Sbjct: 864  SYSQPILILIIVPFSIIGVIWAFFFHGETLSFFAILGTLALVGVIVNDSLVMVAHLNYLK 923

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGI 805
              + +++S  + + +   + L   V T++     V+P+A   G     +    + + +G+
Sbjct: 924  AKFASTMSVYEWVVQGAKDRLRAVVLTTLTTLAGVMPLAYGIGGTDFILQPMVLSLGYGL 983

Query: 806  VVAASSSIFIAAPILLF 822
            +     ++ +   + L 
Sbjct: 984  LFGTLITLILLPCLYLI 1000


>gi|296445713|ref|ZP_06887667.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
 gi|296256816|gb|EFH03889.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
          Length = 1113

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 60/583 (10%), Positives = 158/583 (27%), Gaps = 38/583 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     ++L  +I   G+       + ++  D FP+      I++     G    +L  
Sbjct: 9   LRRPYTFIVLSILILLFGV-----QAISKAPTDVFPNIKIP-VIAVVWSYAG----LLPA 58

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           D    +  F +       S ++             +   +              V    Q
Sbjct: 59  DVSGRITFFYERALT---STVEGIEHIESHSYFGSSITKIFLQPGVDLAAAEADVASISQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  D    +++      + + + Q   + +     +       +    +      
Sbjct: 116 TVTKALPPDISPPMVMRLEASSVPVAVLQVTSESMTPA--DLYNLAYSRIRPLLVTIPGA 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           I          QL    D  ++     + + +       +         ++         
Sbjct: 174 ILPHPYGGKPKQLLVSLDKQKMLARHLSASDVHNAFSHQSLVLPAGDMKIKATDFMVQTN 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                     +   +I    +G    F     ++        + 
Sbjct: 234 ASPL--------------------QIQDFNNIPIKRVGNATIFMKDVADVSLAGPPQTNA 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            ++        +     + S    ++    +   +           +          S +
Sbjct: 274 VLVDGKQAVTVVVMKSGEASTLAVVDGIKKMIPRIERVVPADVKVTLLNDASVFVRDSIN 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  + + L  +V+ + +   +  L+   SI L+++  +  L  L  T+ + ++ G+
Sbjct: 334 DVVHEMVVASALTGVVVLLFLGSWRATLIIATSIPLSILTAIICLRFLDQTINVMTLGGL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   ++ E I       + +  ++    ++     F S +  +I    LF  
Sbjct: 394 ALAVGILVDDATVMIENIDTHLEMGKPLEVAIIDAANQIVIPTFVSTLCIVIVWFPLF-- 451

Query: 481 GGGAVRGFAIT-MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
               V G+  T M  ++  +M  +  + R ++  + +Y  +     +            A
Sbjct: 452 ELSGVSGWLFTPMAEAVAFAMAASFILSRTLVPTMAKYLLVDPNAPHEHQTAGAKSAEDA 511

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
              + AR +     +                 G+         
Sbjct: 512 KAILGARKYPTPDELYAMANRQAEEEAMAGEGGVSHFAMRVSE 554



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 58/160 (36%), Gaps = 5/160 (3%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +  S + + + I + F  W      IT L   +        +     ++ A+   +  +G
Sbjct: 957  LAASVVLIYLLIVVNFQSWLDPFIIITALPGALAGIAWSLFITHTNISVPALTGAIMSMG 1016

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + ++V    R+  +L     +     +      +   + T+ A  I + PMA+   
Sbjct: 1017 TATANSILVVSYARE--RLEIHGDALLAAAEAGYAR-IRPVIMTASAMIIGMAPMAISNS 1073

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                     +  G+ VA  +++F    I   +Y  R K+ 
Sbjct: 1074 QN-APLGRAVMGGLTVATVATLFFVPCIYAIVYGRRQKDK 1112



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/446 (9%), Positives = 129/446 (28%), Gaps = 27/446 (6%)

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL-AVDS 430
            +++ + +++   +    A   +F N+ + +  +    A L    ++G +      A+ S
Sbjct: 15  FIVLSILILLFGVQAISKAPTDVFPNIKIPVIAVVWSYAGLLPADVSGRITFFYERALTS 74

Query: 431 NILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +   E I   +    S             + +   +    T+  +    +   +V+   
Sbjct: 75  TVEGIEHIESHSYFGSSITKIFLQPGVDLAAAEADVASISQTVTKALPPDISPPMVMRLE 134

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
                         S+  +    ++  R   + +     +         +  L+      
Sbjct: 135 ASSVPVAVLQVTSESMTPADLYNLAYSRIRPLLVTIPGAILPHPYGGKPKQLLVSLDKQK 194

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              R        +       +       +             +      ++ + R    +
Sbjct: 195 MLARHLSASDVHNAFSHQSLVLPAGDMKIKATDFMVQTNASPLQIQDFNNIPIKRVGNAT 254

Query: 601 LQIGDISFQNFDGE-KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           + + D++  +  G  +   V +  +   +V   +  E     + + +     +   +V  
Sbjct: 255 IFMKDVADVSLAGPPQTNAVLVDGKQAVTVVVMKSGEASTLAVVDGIKKMIPRIERVVPA 314

Query: 660 KISRELIRKGIV------------GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +   L+    V             V+ SA+  ++ +     W   L   T++ L I   
Sbjct: 315 DVKVTLLNDASVFVRDSINDVVHEMVVASALTGVVVLLFLGSWRATLIIATSIPLSILTA 374

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +          N+  +  +   +G  V+D  V+ + +                I  + N+
Sbjct: 375 IICLRFLDQTINVMTLGGLALAVGILVDDATVMIENI---DTHLEMGKPLEVAIIDAANQ 431

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV 793
            +  +  +++   I   P+    G  
Sbjct: 432 IVIPTFVSTLCIVIVWFPLFELSGVS 457


>gi|150017773|ref|YP_001310027.1| acriflavin resistance protein [Clostridium beijerinckii NCIMB 8052]
 gi|149904238|gb|ABR35071.1| acriflavin resistance protein [Clostridium beijerinckii NCIMB 8052]
          Length = 1013

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/661 (9%), Positives = 172/661 (26%), Gaps = 37/661 (5%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             +      +I              P       +            +        V   +
Sbjct: 13  IVLFLVFIAIITGIGCYYYIPKQESPDVSSPAAM---------ITTIYPGASPKDVESLV 63

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               ++    +          +   + + +       K+     +   ++ + S+L    
Sbjct: 64  TKKIEDKVEEIDGYDYAESYSQNSASIVIVYLNSDVDKDKAWRTLRDKIKDLKSELPDGC 123

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           +++ +     +   I+L         +++ EQ          Q+G      +     +  
Sbjct: 124 EESKIDANLTETAGIIL----SISGENYSYEQIGNYADDIKKQLGNVSGISRFDIKGKQD 179

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            Q+  + D S++ +   +   +       N        G++  +             +I 
Sbjct: 180 KQVKVDVDLSKINKYSISLEDVCGILQAQNVEIPSGSLGLKTEKIKVQTPGNFTSLKDIE 239

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
              +  ++        K +  +  D      +                            
Sbjct: 240 NTIVGVSSDTGQTLKLKDIATVKMDYDDDSAYKFTD-----------------NGEKAVL 282

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                +   +     +        ++                     S S +        
Sbjct: 283 LAGYFQDNKNIVLIGDDVRKKLEEVKKQLPQDLKIDEVTFQPKDVDNSVSFFMKNLEEGI 342

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            LV+I + +I +  +  LV    I +++ L+   + +LG  +   S   +++ +G+ VD 
Sbjct: 343 ILVVITV-LIGMGIRNALVVSSVIPISIALSFITMEILGIKVHQISTTALIIALGILVDD 401

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRG 487
            I++ + ++    +  S   +   G  + +  +F S +  + A   L       G  +R 
Sbjct: 402 AIVIGDVVQVGIDEGLSGDEAAFKGIKKLFVPVFTSTLIIVGAFAPLLSIPGAVGEFIRT 461

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
               + + I  S  +A+ I  AM     +  K+   +      F  +        ++   
Sbjct: 462 LPQVVMICITCSYISALFITPAMSSLFFKKSKISEKENKIEKFFHKLLTYGLKHKLKIII 521

Query: 548 ---WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  IS+          F +     I      +     N   +L          Q  
Sbjct: 522 GSLLVFVISMGLMNLLGSQFFPYVDKDVIYIDVSNEKVEDINSTENLVKEIEEALKSQEE 581

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
              + +  G       +          T  + +           +  +  E +  ++  E
Sbjct: 582 VTGYTSAIGGGMPSFYITLPTVAPSKDTARIMVKVDISKTKTFDTREKFVEHMQTQLDNE 641

Query: 665 L 665
           +
Sbjct: 642 I 642



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 67/146 (45%), Gaps = 6/146 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  I +L L +   +    +  +  +LTAV  +++LIG  + + +++ + + +  
Sbjct: 871  SFIQPLVIIYSLPLSLIGVIMGLLMCDMPLSLTAVMGIISLIGVVIRNAILLVEYIIEGR 930

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                  +S  +    +++      + +S A    ++P+A+   ++ G  ++ + FG+  A
Sbjct: 931  HE---GLSIDEACIHAVSLRFRPIILSSTATITGLVPLALSNSTLFGPMSVTIIFGLASA 987

Query: 809  ASSSIFIAAPILLFIYDWR--AKNAR 832
               + FI  P++  + + +   + A+
Sbjct: 988  TFLT-FIVVPVMYSLVNTKLEERQAK 1012



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 75/221 (33%), Gaps = 14/221 (6%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           ++    +            V + + + +         ++ +       + L    I+ VI
Sbjct: 288 QDNKNIVLIGDDVRKKLEEVKKQLPQDLKIDEVTFQPKDVDNSVSFFMKNLEEGIILVVI 347

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              I M I      +    + ++  +   I  +     + GI+ +  +  A++  +G  V
Sbjct: 348 TVLIGMGI------RNALVVSSVIPI--SIALSFITMEILGIKVHQISTTALIIALGILV 399

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV- 793
           +D +V+ D +          +S  +   K I +       +++    +  P+    G+V 
Sbjct: 400 DDAIVIGDVV---QVGIDEGLSGDEAAFKGIKKLFVPVFTSTLIIVGAFAPLLSIPGAVG 456

Query: 794 --IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             I +    +   I  +  S++FI   +    +     + +
Sbjct: 457 EFIRTLPQVVMICITCSYISALFITPAMSSLFFKKSKISEK 497


>gi|260866723|ref|YP_003233125.1| copper/silver efflux system protein CusA [Escherichia coli O111:H-
           str. 11128]
 gi|257763079|dbj|BAI34574.1| copper/silver efflux system protein CusA [Escherichia coli O111:H-
           str. 11128]
 gi|323179957|gb|EFZ65514.1| cation efflux system protein cusA [Escherichia coli 1180]
          Length = 1047

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLLLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADIKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|206601496|gb|EDZ37980.1| Putative heavy metal efflux protein, CzcA [Leptospirillum sp. Group
           II '5-way CG']
          Length = 1060

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 82/607 (13%), Positives = 165/607 (27%), Gaps = 44/607 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W++ +  +I   G +      L QS LD  P       I                 
Sbjct: 11  QRRYWVLGICLLILAWGSIS-----LYQSPLDAIPDLSDTQVI---------VKASFAGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + I + F +         +V  +L  
Sbjct: 57  PPSVVENQVTYPLTTAFLTIPGVRHVRGYSDFGNSLIYILFKEGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L      +L    T                                 ++       
Sbjct: 117 VEGRLPQGVTASLGPDATGLGWIYEY-ALVDKTHRYDLSRLRSIQDWFLKFELQSIHGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      ++ +   E DP +L       +K+       N    G +  +   +    ++ 
Sbjct: 176 QVASVGGMVTEFQVEVDPRKLLGYHIPLSKVEKAIRNSNGDVGGSVVDMGESQFMVRSRG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                            G          ++     + L   
Sbjct: 236 YIRSLEDI-------------------RNIPLSLGAGGVPVRLSDVASVHLGPELRLGIA 276

Query: 302 VLTAPV-INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L     +   I   +   +    IE        L+    P    +         L S  
Sbjct: 277 ELDGKGEVAGGIVISRGGTNALKIIEAVKKKLRDLKPMLPPGVEIVTTYDRSRLILKSIR 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    +  V +V  + +   +  LVA  S+ + +     L++  G T  + S+ GI
Sbjct: 337 TLLEKLLEESIAVSLVCLLFLSRIRSSLVAILSLPVGIFAAFVLMARQGLTANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            + IG+ VD+ I++ E + +   +      S   ++         ++F S +   ++ + 
Sbjct: 397 AVSIGVMVDAAIVMIENMHKHRERSGESETSWETAIQSA-QEVGPSLFFSLLVITVSFLP 455

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G   +  A T   SI IS   +I++V  +M F+IR K     D         
Sbjct: 456 IFALQDQEGRLFKPLAFTKTYSIAISAGLSITLVPVLMGFLIRGKIKPEEDNVINRILVF 515

Query: 534 IPDCIAIQFMRARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           +   +    +R R   +       +   I L           ++G +         V + 
Sbjct: 516 LYRPVIGWVLRHRKLTIAFACACLATSVIPLSHLGTEFMPPLYEGDLLYMPTLTPGVSVG 575

Query: 593 VVRSNLE 599
                L+
Sbjct: 576 ESAHLLQ 582



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 93/281 (33%), Gaps = 7/281 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S         +     +       G   + V  +    + +       +   D   +   
Sbjct: 227 SQFMVRSRGYIRSLEDIRNIPLSLGAGGVPVRLSDVASVHLGPELRLGIAELDGKGEVAG 286

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G                 + ++ ++       +  ++T   + ++   I   L +     
Sbjct: 287 GIVISRGGTNALKIIEAVKKKLRDLKPMLPPGVEIVTTYDRSRLILKSIRTLLEKLLEES 346

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +S +     +    +   +L AI +L + I       A  G+  N+ ++  +   IG 
Sbjct: 347 IAVSLVC----LLFLSRIRSSLVAILSLPVGIFAAFVLMARQGLTANIMSLGGIAVSIGV 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+  +V+ + M K+ +    S +  +   +S  E      ++ +   +S LP+      
Sbjct: 403 MVDAAIVMIENMHKHRERSGESETSWETAIQSAQEVGPSLFFSLLVITVSFLPIFALQDQ 462

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G +    A    + I ++A  SI +   ++ F+   + K 
Sbjct: 463 EGRLFKPLAFTKTYSIAISAGLSITLVPVLMGFLIRGKIKP 503



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/265 (14%), Positives = 77/265 (29%), Gaps = 14/265 (5%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
            G   L     + V LS + S         I  +N        +  +        +     
Sbjct: 776  GASLLSTPDGQEVPLSRLASLSIEDGPTMIKTENARLTGWIYIEPKGGNLGGYVELARKA 835

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            + +          +         +  + L  + ++ +    I  L++I  R      +  
Sbjct: 836  IARSVTLPPGTTLSWSGQYTSIERARKRL--ELVLPLAFGLIVALLFIHFRSVAKTGMV- 892

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV-------YDRMRKNMK 749
            + +L   +  +L F        ++  V  ++ L G +    +V+        DR R    
Sbjct: 893  LLSLPFAVLGSLWFLYGLHYRLSVAVVTGMIALAGVAAEFGIVMILYLDRSVDR-RMTEG 951

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
               T     + I +     L     T       +LP+      G  V+   A PM  G+V
Sbjct: 952  RLRTPEDLDEAILEGTLYRLRPIAMTGTVILAGLLPIMWSHKTGSDVMKRIAAPMVGGMV 1011

Query: 807  VAASSSIFIAAPILLFIYDWRAKNA 831
             A   S+ +   +         +  
Sbjct: 1012 TAMILSLLVIPVLFRMWKGGDLRKK 1036


>gi|296271706|ref|YP_003654337.1| CzcA family heavy metal efflux pump [Arcobacter nitrofigilis DSM
           7299]
 gi|296095881|gb|ADG91831.1| heavy metal efflux pump, CzcA family [Arcobacter nitrofigilis DSM
           7299]
          Length = 1039

 Score =  127 bits (318), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 75/676 (11%), Positives = 188/676 (27%), Gaps = 48/676 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N +LV+   +I  +  + A+ N    S LD  P   P   I           +       
Sbjct: 12  NKFLVLFSVLILTVASIWAVKN----SSLDALPDLSPPQVI---------VQVKWAGQSP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   +          L                I + F D     +  +++   L  + 
Sbjct: 59  KTIEEQVSYPLISNLMSLPNIDTVRAMSSFQNALIYIIFKDGTDIYDSRNRILEQLSQLQ 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                     +    T    +   +  +  + +           +     +   +   + 
Sbjct: 119 GTFPDGVNVAIGPDATGVGWAYEYALKSKTKSLDELKTLQDYYYKY---ALLGVDGVSEI 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                 +       +  +L Q   +   +    V  N+ K G +            +  +
Sbjct: 176 ASVGGFIKNYEITLNQDKLVQYNLSINDVKKALVSNNDEKGGRIILENGYEHMIQARGYL 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +  V+I  I +    +          V+I+              + +G  + V       
Sbjct: 236 KSVVDIENITVKTFGSTPLKIKDIADVNITSSNRRGMADLNGEGETVGGIVVVRFGENPY 295

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                                 +    +   L+   +     +           +    K
Sbjct: 296 ----------------------KVIKAVKEKLKTLHVDDVEVVETYDRSSLIDKAIDTLK 333

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T    + +V++V  + + + +  L+   ++ + V+ T   +        + S+ GI + 
Sbjct: 334 HTLLEESIIVIVVTALFLFHFRSALIIIITLPITVLFTFLCMKFFSMGSNIMSLGGIAIA 393

Query: 424 IGLAVDSNILVNERIREENRKNQS-----VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           IG  VD+ I++ E   +  +  ++         +     +    IF + +  +++ + +F
Sbjct: 394 IGAMVDATIVMVENAHKYLQGKENISNKQRIEIIIKSAKQVGRPIFFALLLVVVSFLPIF 453

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   +++     +I++V  +MIF IR K M          F  + 
Sbjct: 454 ALTGQEGRLFSPLAFTKSFAMISGAVLSITLVPILMIFFIRGKIMDEKRNYLNKFFIALY 513

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    +R R+  V + I   I +  +       +         + +          + 
Sbjct: 514 SPLLKFSLRFRYVVVALFIGTLILAYPVYKKQNWEFMPMMNEQTFMYMPVTPYGIGIDLA 573

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L      D   ++F   +    +       +      +     +             +
Sbjct: 574 KELTQK--TDKILKSFPEVQTVFGKAGRADSATDPAPLAMIETIIQFKPQDQWREGMTYK 631

Query: 656 IVGPKISRELIRKGIV 671
            +  ++  +L   G+V
Sbjct: 632 KLMQEMDDKLRVTGLV 647



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 92/284 (32%), Gaps = 6/284 (2%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
              + +          Y         + V       L +      ++   +         
Sbjct: 218 RIILENGYEHMIQARGYLKSVVDIENITVKTFGSTPLKIKDIADVNITSSNRRGMADLNG 277

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
           +   V             +V++ VK+K+  +               +  + I      ++
Sbjct: 278 EGETVGGIVVVRFGENPYKVIKAVKEKLKTLHVDDVEVVETYDRSSLIDKAIDTLKHTLL 337

Query: 675 I-SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             S I +++     F +  AL  I TL + +  T      F +  N+ ++  +   IG  
Sbjct: 338 EESIIVIVVTALFLFHFRSALIIIITLPITVLFTFLCMKFFSMGSNIMSLGGIAIAIGAM 397

Query: 734 VNDKVVVYDRMRKNMKLYTT--SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           V+  +V+ +   K ++      +    ++I KS  +      +  +   +S LP+    G
Sbjct: 398 VDATIVMVENAHKYLQGKENISNKQRIEIIIKSAKQVGRPIFFALLLVVVSFLPIFALTG 457

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                F   A   +F ++  A  SI +   +++F    +  + +
Sbjct: 458 QEGRLFSPLAFTKSFAMISGAVLSITLVPILMIFFIRGKIMDEK 501



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 12/146 (8%)

Query: 697  ITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            I    L    T G F L       ++  +   L L+G +    +V+   + + M      
Sbjct: 886  IIFFTLPFALTGGIFYLDYLNFNISIAVIVGFLALLGVAAETSIVMLVYLHEAMLELKDK 945

Query: 755  -------ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                         I K     L   + T  A    ++P+      G  V+   A PM  G
Sbjct: 946  CISLDDDKHIFHAIYKGAVLRLRPKLMTLFAILGGLVPIMYIDGVGSEVMQRIAAPMIGG 1005

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ +A  ++ I   +   +   +   
Sbjct: 1006 MISSAFLTLIIIPSVFFILALKKRDK 1031


>gi|320011211|gb|ADW06061.1| acriflavin resistance protein [Streptomyces flavogriseus ATCC
           33331]
          Length = 1051

 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 64/517 (12%), Positives = 149/517 (28%), Gaps = 32/517 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  +I  + L+      +PQ      P+        L            +  
Sbjct: 6   RFSLAQRALIGLISIVALVFGA-IAIPQLKQQLLPTIELPMVSVLAP---------YQGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF-KENIADKVTLFLQ 120
             D V   +    +     +        +  +    I  SF       + +   +   + 
Sbjct: 56  SPDVVEKQVVEPLENAIKAVDGVEGITSTASEGNAVIMASFDFGDEGTKQLVADIQQAVN 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L       ++  +T+   ++VL+  +           + E+ R  +  +   E  
Sbjct: 116 RARVQLPDSVDPQVVAGSTDDIPTVVLAVTSDKDQQ----ALADELDRTVVPALEDIEGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q        +Q+    D  +L         +S        +     F       +    
Sbjct: 172 GQVSVDGVQELQISVVPDDGKLAAAGLNAGSLSQALQAAGATVPAGSFSESGKSRTIQVG 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  +I  + +                       G +         + +  A  +  
Sbjct: 232 GSFTSLQQIEDLKVVAQNP--------------ATGEGGKPVRVGDVATVKQEPATAVSL 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      + +     S     +        LR          V      A   S S
Sbjct: 278 TRTNGKPSLAVMATMDKDGSAVAISDAVQDKLPGLRKDLGAGAELTVVSDQGPAVSKSIS 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A+     ++V+ + +   +  LV   SI L+++L L +L     +L + ++  +
Sbjct: 338 GLTTEGALGLLFAVVVILVFLASIRSTLVTAVSIPLSIVLALIVLWTRDLSLNMLTLGAL 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD +I+V E I+      +    ++          +  S +T +   + +   
Sbjct: 398 TIAIGRVVDDSIVVLENIKRHLGYGEERQSAIITAVKEVAGAVTSSTLTTVAVFLPIGLV 457

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG        F++T+  ++L S+  ++++V  +  + 
Sbjct: 458 GGMVGQLFGSFSLTVTAALLASLLVSLTVVPVLSYWF 494



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 68/195 (34%), Gaps = 8/195 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                              V   ++ KI  +        T     +   +   K  + ++
Sbjct: 801 DGQRAATITAKPTGDNTGAVSTSLQTKIDALDLPDGATATIGGVSEDQNDAFMKLGLAML 860

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +   F+     L  + ++    T  +G   + G    + A+  +L LIG  
Sbjct: 861 AAIAIVFMLLVATFRSLIQPLILLVSIPFAATGAIGLLVVTGTPMGVPAMIGMLMLIGIV 920

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
           V + +V+ D + +        +   + + +     L   + T++A   +++PMA+     
Sbjct: 921 VTNAIVLIDLINQYRAQ---GMGVVEAVVEGGRHRLRPILMTALATIFALVPMALGVTGE 977

Query: 790 GGSVIGSFAIPMAFG 804
           GG +    A+ +  G
Sbjct: 978 GGFISQPLAVVVIGG 992



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 67/173 (38%), Gaps = 9/173 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE---LIRKGIVGVIISAIAMLIYIW 685
                V + +     ++   + +      GP +S+    L  +G +G++ + + +L+++ 
Sbjct: 300 AISDAVQDKLPGLRKDLGAGAELTVVSDQGPAVSKSISGLTTEGALGLLFAVVVILVFLA 359

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L    ++ L I   L       +  N+  + A+   IG  V+D +VV + ++
Sbjct: 360 ---SIRSTLVTAVSIPLSIVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK 416

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              +        +  I  ++ E  G    +++      LP+ + GG V   F 
Sbjct: 417 ---RHLGYGEERQSAIITAVKEVAGAVTSSTLTTVAVFLPIGLVGGMVGQLFG 466



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/488 (10%), Positives = 129/488 (26%), Gaps = 60/488 (12%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++ +     G    +P              +   +     +L  G+ L    + 
Sbjct: 534 RRRVTSVVIAFAVLFGTFGMVPLLKTNFFDQGEQEVLSVKQ-----ELTPGTSL----EA 584

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV------- 115
            D     ++            +G+  + +    +    +F         + +V       
Sbjct: 585 ADEAARKVEKVLAA------DKGVEDYQVTVGSSGFLAAFGGGTGANQASYQVTLKDSAD 638

Query: 116 ----TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
                  +     KL+      +          + +     D      ++++ E +R  +
Sbjct: 639 FDATQDRIDEALGKLDGIGDTTIAAGDGFGSQDLSVVVKAADA---DVLKKASEAVRGEV 695

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            ++   E            +     +   +          +         + +G   G  
Sbjct: 696 AEL---EDVTDVQSDLAQSVPRISVKANDKAADAGFDGTTLGAAVA---GAVRGTPAGTA 749

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
            + D++ +  +   +   +   L               V++    +   R        I 
Sbjct: 750 IMDDTERDVLVKSAEPATTMTELKALRLGPVRLGDIATVELVPGPVSMTRIDGQRAATI- 808

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                                    A+ +G+ T   +  L   + A  LP          
Sbjct: 809 ------------------------TAKPTGDNTGAVSTSLQTKIDALDLPDGATATIGGV 844

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 +             +V ++L          L+   SI       + LL + G  
Sbjct: 845 SEDQNDAFMKLGLAMLAAIAIVFMLLVATFRSLIQPLILLVSIPFAATGAIGLLVVTGTP 904

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           + +P++ G+++ IG+ V + I++ + I +   +   V  ++  G       I  + +  +
Sbjct: 905 MGVPAMIGMLMLIGIVVTNAIVLIDLINQYRAQGMGVVEAVVEGGRHRLRPILMTALATI 964

Query: 472 IATVVLFF 479
            A V +  
Sbjct: 965 FALVPMAL 972


>gi|326800990|ref|YP_004318809.1| acriflavin resistance protein [Sphingobacterium sp. 21]
 gi|326551754|gb|ADZ80139.1| acriflavin resistance protein [Sphingobacterium sp. 21]
          Length = 1058

 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 71/670 (10%), Positives = 178/670 (26%), Gaps = 40/670 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  M+  + +     N + +  +D FP                   +        +++GF
Sbjct: 12  IAIMVVVLAIAFFSYNTVKKINVDIFPEVELPAMY---------VAMPYGGLSPAYMDGF 62

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +     ++  F+       F   Q    + L+F         A +V+  +      L   
Sbjct: 63  MANEFQKVLLFVSGVKNIDFKSVQGLTLMKLTFYPGTDMSQAAGEVSTSVSRAMGFLPPG 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               ++V      + +       D       E     + +                    
Sbjct: 123 AVPPMVVRFDGSSLPVGNLVFESD--QRSVNEIQTLALTKIRPMFVQIPGITSPAPFGGN 180

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           +  +    DP  ++    +   ++      +         +                   
Sbjct: 181 IRSIVINIDPEAMQANGLSPEDITVAITKNSLPSPAGNIRI------------------- 221

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
            G     A  N   K    ++         R  +      +       +   ++      
Sbjct: 222 -GDENLMAPINSIAKGPDELLKTPVKTSDNRTVYVGDVARVEDGADQTVGYALINGKRSV 280

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 KA  S    +E       ML+           E         S S       + 
Sbjct: 281 YLPIIKKADASTLDAVENLKAAIPMLKDQLPEDVKVSYEFDQSSYIERSLSNLIHEGILG 340

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A    +V+ + +   +  ++  F+I + ++  +  L L G T+ + +++G+ L IG+ VD
Sbjct: 341 AVFTGLVILLFLGDTRGAIIVVFTIPIAILTAVTTLYLFGQTINIMTLSGLALSIGILVD 400

Query: 430 SNILVNERIREENRKNQSVFCSLDM---GFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
              +  E I +     +    ++       S A   I    +  L    ++         
Sbjct: 401 EATVTIENIHQHMEMGKKKQRAIVDALLEISIAKLLILLCILAVLTPAFIMTGIPKDMFM 460

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRFFLIPDCIAI 540
             ++ +  +++ S   + + V  +  ++++ K        +        R          
Sbjct: 461 PLSMAVAFAMIASFLASQTFVPILANWMMKNKHNTEANTPRKRAFFDKFRVNYSYRMRKW 520

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
               A  + V + +  +I  + L         +   G  Q+ + A +   +      ++ 
Sbjct: 521 STKAAPLFVVYLLVAGAIAGLLLTVVGTDVMPVSNNGDFQMRIQAPQGSRIEKTERIVKE 580

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           +     +    +G       +   P  S      L         +      +        
Sbjct: 581 ITEDIKAELPENGLNITSAFVGMHPAGSPINPIFLFSNSSHEAVLQISVNQEVYGGSMED 640

Query: 661 ISRELIRKGI 670
              ++ +K I
Sbjct: 641 FKEKVRKKII 650



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 90/276 (32%), Gaps = 5/276 (1%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 +   + +  G D      +    NR V +  V    +                 
Sbjct: 221 IGDENLMAPINSIAKGPDELLKTPVKTSDNRTVYVGDVARVEDGADQTVGYALINGKRSV 280

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVII 675
           +L  ++     ++     L+     + + +P     + E          +   I  G++ 
Sbjct: 281 YLPIIKKADASTLDAVENLKAAIPMLKDQLPEDVKVSYEFDQSSYIERSLSNLIHEGILG 340

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           +    L+ +        A+  + T+ + I   +    LFG   N+  ++ +   IG  V+
Sbjct: 341 AVFTGLVILLFLGDTRGAIIVVFTIPIAILTAVTTLYLFGQTINIMTLSGLALSIGILVD 400

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           +  V  + + ++M++       +  I  ++ E     +   +     + P  +  G    
Sbjct: 401 EATVTIENIHQHMEMGKKK---QRAIVDALLEISIAKLLILLCILAVLTPAFIMTGIP-K 456

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +P++  +  A  +S   +   +  + +W  KN 
Sbjct: 457 DMFMPLSMAVAFAMIASFLASQTFVPILANWMMKNK 492


>gi|255015384|ref|ZP_05287510.1| cation efflux system protein, AcrB/AcrD/AcrF family protein
           [Bacteroides sp. 2_1_7]
 gi|262382223|ref|ZP_06075361.1| cation efflux system protein [Bacteroides sp. 2_1_33B]
 gi|262297400|gb|EEY85330.1| cation efflux system protein [Bacteroides sp. 2_1_33B]
          Length = 1027

 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 76/673 (11%), Positives = 198/673 (29%), Gaps = 48/673 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVN 67
           L  ++C + L+I        + +D FP       +           ++ E +    + V 
Sbjct: 14  LVILVCALLLMIWGTYTAFNTDVDVFPDLNAPTVV-----------IMTEANGMAPEEVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   +          S     + + + F            V+  L  +   L 
Sbjct: 63  RLVTFPVETAVNGAMDVRRVRSSSTTGFSVVWVEFDWGTDIYRARQIVSEKLAVLGESLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            +  K  L   +     +++     D      ++           ++  +    Q     
Sbjct: 123 ENVGKPTLGPQSSILGEMMILGLTADST--SLLDLRTIADWTIRPRLLSTGGVAQVAVIG 180

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + +     DP+R++       ++       N +  G +                    
Sbjct: 181 GDIKEYQILLDPARMKHYGVGLNEVLDVCRNMNRNANGGVLY------------------ 222

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           E    ++     +           +           ++    IG     +      T P 
Sbjct: 223 EFDNEYIIRGVLSTSKAEEIAQGVVKTVNEYPVTLGDIATVKIGGKSPKLGTASERTKPA 282

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   +       +   T +   I+  + +     + ++    R       S +  K +  
Sbjct: 283 VLITVTKQPDTSTEKLTEKLDEIVVDLRKNLPADVHVSTDIFRQSHFIDNSINNVKKSLF 342

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             +  V+IVLF+ ++  +  +++  ++ L++++++ +L  +G T+   S+ G+ + IG  
Sbjct: 343 EGSFFVVIVLFLFLMNIRTTVISLVALPLSLLVSIIVLHYMGLTINTMSLGGMAIAIGSL 402

Query: 428 VDSNILVNERIREENR--------KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VD  I+  E + +  R        + +S    +          I +S +  +++ V LFF
Sbjct: 403 VDDAIVDVENVYKRIRENRLLPPDQQRSTLEVVYDASREVRMPILNSTLIIVVSFVPLFF 462

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLI 534
                G  +    I   +++  S   A+++   +  +++  K   MK +    ++R   +
Sbjct: 463 LSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLNRKATGMKELREAWIARKLKV 522

Query: 535 PDCIAIQFMRARFWGV--GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               A++   A    V      LF +  +              +G   + V +   + L 
Sbjct: 523 VYKRALELALAYQKWVLGTTIALFVVALVIFFHLGRSFLPPFNEGSFTINVSSLPGISLD 582

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                    +   +             R +            +E   +            
Sbjct: 583 ESDQIGRRAEALLLQVPEIKTVARKTGRAELDEHALGVNVSEIEAPFELQDRSRDEVMND 642

Query: 653 NTEIVGPKISREL 665
             + +       +
Sbjct: 643 VRKKLSTISGANI 655



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 73/220 (33%), Gaps = 9/220 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-I 675
             V  Q          ++ E+V      +     +              I      +   
Sbjct: 285 ITVTKQPDTSTEKLTEKLDEIVVDLRKNLPADVHVSTDIFRQSHFIDNSINNVKKSLFEG 344

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S   +++           + ++  L L +  ++      G+  N  ++  +   IG  V+
Sbjct: 345 SFFVVIVLFLFLMNIRTTVISLVALPLSLLVSIIVLHYMGLTINTMSLGGMAIAIGSLVD 404

Query: 736 DKVV----VYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           D +V    VY R+R+N  L      S  +++  +  E     + +++   +S +P+    
Sbjct: 405 DAIVDVENVYKRIRENRLLPPDQQRSTLEVVYDASREVRMPILNSTLIIVVSFVPLFFLS 464

Query: 791 GS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G    ++    I     +  +   ++ +   +  ++ + +
Sbjct: 465 GMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLNRK 504



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 60/138 (43%), Gaps = 10/138 (7%)

Query: 697  ITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L L +    G     L   E ++ A+   ++L G +  + +++         L    
Sbjct: 893  VILLNLPLALIGGVIILWLTSGEISIPAIIGFISLFGIATRNGMLLISHY---THLRGEG 949

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAAS 810
            +  R+ + +   + L   + T++++ ++++P+A+     G+ I S  A  +  G++ +  
Sbjct: 950  MGLRESVIQGSLDRLNPILMTALSSALALIPLALNGDLPGNEIQSPMATVILGGLLTSTF 1009

Query: 811  SSIFIAAPILLFIYDWRA 828
             + FI  PI+  I +   
Sbjct: 1010 LNGFII-PIVYLIMNKNK 1026


>gi|242280231|ref|YP_002992360.1| acriflavin resistance protein [Desulfovibrio salexigens DSM 2638]
 gi|242123125|gb|ACS80821.1| acriflavin resistance protein [Desulfovibrio salexigens DSM 2638]
          Length = 1027

 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/584 (9%), Positives = 154/584 (26%), Gaps = 39/584 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN   +IL+ +I   G+     +          P    +  +            V     
Sbjct: 10  NNRTSIILFVLIAVAGV-----STFFSIPKSEDPDFTIRTAV---------ISTVFPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF-ADSRFKENIADKVTLFLQG 121
              V   +    +E    +              + I + F  + +    I  ++   +  
Sbjct: 56  PQRVEELVTDKLEEKIREIDVIKNVRSQSMTGLSIIEVEFQENQKNMTPIWQQLRNKVLD 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  +  + ++         IV++            + +        D++    S  
Sbjct: 116 AKKDLPAEAYEPIVNDEFGDVFGIVVALTGDGFTYRELKDVADYT----RDELLSIPSVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  +   SR+     T   ++      N  +      V           
Sbjct: 172 KVDRWGLQDERVFVDFSNSRMAAAGITPFALAQMLSQQNMIRPSGSAKVGP--------- 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                       +                     E             I    A      
Sbjct: 223 ----------ERIYIEPTGEFKSVDDIRNMSLRVEGMKSSLKLSDVTEITHGFADPPGVM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A  +    +           + +L   +           + +   
Sbjct: 273 ARYNGEPCIMLAISMADGNNILEVGELVTAKLDKLSKNLYHGMEYNVVVYQPDYVDTAVT 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + + + ++V+ +     + GL+A   + + ++  L L+ L    L   SIA ++
Sbjct: 333 DFMINLLESFVFVVVVILAFAGFRTGLIAGSLVPMAMLGCLGLMPLFDVGLQRISIASLI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G+ VD+ ++V+E I     + +    ++    S  +  +  +++T + A + +    
Sbjct: 393 ISLGILVDNGVVVSEAILVRLARGEERLKAVVGAVSELWMPLLAASLTTVFAFLPIPLAE 452

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
             A   F  ++ + + +++  +  +  +M+  +  Y     + I   S          + 
Sbjct: 453 -NATGEFCFSLFIVVSLTLICSWGLSMSMVPMLCYYVLKPKVVIQTFSSRMYRIYRAMLL 511

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           F           +L    +    F              Q  +  
Sbjct: 512 FCLRHRPSFLAVVLIGCMAAFWGFQFVPKMFFPPNERAQFTIDF 555



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 72/203 (35%), Gaps = 4/203 (1%)

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
                +  +        L        + +    ++     K+++ +      N  +  P 
Sbjct: 266 ADPPGVMARYNGEPCIMLAISMADGNNILEVGELVTAKLDKLSKNLYHGMEYNVVVYQPD 325

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
                +   ++ ++ S + +++ I     +   L A + + + +   LG   LF +    
Sbjct: 326 YVDTAVTDFMINLLESFVFVVVVILAFAGFRTGLIAGSLVPMAMLGCLGLMPLFDVGLQR 385

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            ++A+++  +G  V++ VVV + +   +            +  +++E     +  S+   
Sbjct: 386 ISIASLIISLGILVDNGVVVSEAI---LVRLARGEERLKAVVGAVSELWMPLLAASLTTV 442

Query: 781 ISVLPMAVWGGSVIGSFAIPMAF 803
            + LP+ +   +  G F   +  
Sbjct: 443 FAFLPIPLAENAT-GEFCFSLFI 464



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/203 (11%), Positives = 75/203 (36%), Gaps = 6/203 (2%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
               +  + +M++ +   +              +    +     + + +    +L+ ++  
Sbjct: 817  DAVRPEIEKMMQSENWPVGYSVAYGGEFEKSQESQEAINANMPLAMGL---LVLVLVFQF 873

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                  L  + TL   +        L    F    +  +++L+G  VN+ +++ DR+ + 
Sbjct: 874  NSVRRPLIILLTLPPMMCGITPGMILTNSPFGFMPMLGMISLLGIIVNNAIMLIDRI-EI 932

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            ++     ++  + I  +  E     + T+    I ++P+++ GG +    A  +  G++ 
Sbjct: 933  LR--GRGLTLDNSIVLASLERARPIIMTATTTIIGMVPLSLQGGEMWRPMANCIMSGLMF 990

Query: 808  AASSSIFIAAPILLFIYDWRAKN 830
            A   ++ +   +    +    K 
Sbjct: 991  ATVLTLILCPVLYSLFFKQSFKK 1013


>gi|54298312|ref|YP_124681.1| HelA protein [Legionella pneumophila str. Paris]
 gi|53752097|emb|CAH13524.1| HelA protein [Legionella pneumophila str. Paris]
          Length = 1049

 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 73/600 (12%), Positives = 162/600 (27%), Gaps = 57/600 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +++  ++++   +I  +G+         +  +D  P                   +  + 
Sbjct: 10  LKHRWFVLLFTFIIAVLGVY-----NFQRLPIDAVPDITNVQ-----------VQINTQA 53

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  V   +    +   S L          R   +++T+ F D          +   
Sbjct: 54  SGYSPFEVEQRITFPIELAMSGLPNLDYTRSLSRYGLSQVTVVFKDGTNIYFARQLINER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH----AIEQSMEIIRQRIDQI 174
           LQ V  KL  + +  L   +T      + +  N   +        +E           Q+
Sbjct: 114 LQEVKDKLPPEAETTLGPISTGLGEIFMYTVTNKSNLPKSQRYNPMELRTIQDWIIKPQL 173

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
              E   +         Q     DP++L +   +   +       N +           +
Sbjct: 174 RNVEGVAEVNTIGGYEKQFHITPDPTKLVRYGLSLNNVVEALERNNANVGAGYIERNGEQ 233

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           +       V++  +I  I +                                   +    
Sbjct: 234 NLIRVPGQVKNIADIENIVVANFE--------------------GTPVRIRDVAEVALGK 273

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          +        
Sbjct: 274 ELRTGAATENGDEVVLGTVFMLMGENSRTVSQRVAAKMKEINKSLPEGVEAVTVYNRTLL 333

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV ++LF+ +   +  L+    I L+++LT+  +     +  L
Sbjct: 334 VNATINTVKKNLLEGALLVCVILFLFLGNVRAALITAMVIPLSMLLTITGMVTNQISANL 393

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYSTI 463
            S+    L  GL VD  +++ E   +   + Q     +     R              +I
Sbjct: 394 MSLGA--LDFGLIVDGAVIIVENCIKHLGEQQHALQRILNLEERLKTIAYATTEVIRPSI 451

Query: 464 FDSNITALIATVVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           F   I  ++   +L   G         A T+ +++L SM  A++ V A +   +R +  +
Sbjct: 452 FGVFIITVVYLPILTLTGVEGKMFLPMAETVIIALLASMLFALTFVPAAVAIFLRGRVQE 511

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +   F   R       +L  I  I      G       +G I +
Sbjct: 512 KENRLVHFLSLGYAKVLRRCFHARRQVIGAAVVLVIISLILSFRLGGEFIPSLDEGDIAM 571



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 90/249 (36%), Gaps = 12/249 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             + LS V   + S     IS +           ++ +   S        + +K       
Sbjct: 801  FIPLSEVAKMVRSESPNQISREVGKRRVVVTANVRNRDLSSFVNEAKQRIEQKVKVPSGY 860

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              T           S+ L     + V I+ + + + +++ F        + + I  +  T
Sbjct: 861  WITWGGQFEQLQSASQRLQ----IVVPITLLGIFLLLFMSFGNVRNALLVFSGI-PLALT 915

Query: 708  LGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             G FAL+  GI  +++A    + L G +V + +V+   +  N          +D + +  
Sbjct: 916  GGVFALWLRGIPLSISAGVGFIALSGVAVLNGLVMITFI--NKLREQKKYYLKDAVLQGS 973

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   +   
Sbjct: 974  LARLRPVLMTALVASLGFVPMALATGTGSEVQRPLATVVIGGIISSTFLTLLVLPGLYYI 1033

Query: 823  IYDWRAKNA 831
             ++ R K  
Sbjct: 1034 FHERRKKQG 1042


>gi|165976001|ref|YP_001651594.1| acriflavine resistance protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|307245448|ref|ZP_07527536.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307254402|ref|ZP_07536240.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256611|ref|ZP_07538392.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307258861|ref|ZP_07540593.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|307263226|ref|ZP_07544846.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|165876102|gb|ABY69150.1| acriflavine resistance protein [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|306853789|gb|EFM86006.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306862701|gb|EFM94657.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865021|gb|EFM96923.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306867212|gb|EFM99068.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306871443|gb|EFN03167.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 1039

 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/565 (10%), Positives = 156/565 (27%), Gaps = 38/565 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL       + +  +  +P                   +     
Sbjct: 9   KRPVLAVCISLLITILGL-----QSINKLQVREYPEMTISIVT---------VKVNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +E  +          S     +  T+    +   +     ++  +  
Sbjct: 55  DASLMQALVTSQIEEAVAQADNIDYVTSSSGPSSSTTTIKMKLNTNPQMALADISAKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L        +  ++    +++  +   D++     + +  I R    Q        
Sbjct: 115 IRANLPSGIDDPSISVSSGSNDALMYIRFVSDEL--STPQITDYINRVVKPQFFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP ++     + A +       N +         +    +  + 
Sbjct: 173 SVDIFGAANFGLRIWLDPDKMAGNNLSGAAVLSALSANNLNTAAGNANGYYTVYKNKVES 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  + ++                        R         +           
Sbjct: 233 STPSVEELENVTIST-------------------TSDGRIVKLKDIAKVELDKYQDASRA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +           S     +     +    +  ++           +      A   S + 
Sbjct: 274 IADGKEAVVLAVSAATTANSLTVAKDIYPVFDLITKNLPSSVNGQIMYDKTVAINSSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL V+ + +   +  +V   +I +++I  L  L + G ++ L ++  +V
Sbjct: 334 VIKTIGEATVIVLAVIILFLGSLRAMIVPIITIPISLIGVLFFLQMFGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ ++ F +  +G       +    IT       +    
Sbjct: 394 LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLAAVYSPMALME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  ++ IS   A+++   M   +++    ++          ++    
Sbjct: 454 GVTGSLFKEFALTLAGAVFISGIAALTLSPMMSSRVLKEHNEENESRFSKCINTMLDKMT 513

Query: 539 AIQFMRARFWGVGISILFSICSICL 563
           A      R       ++        
Sbjct: 514 ACYTNMLRGVMSVRWLVVIFAMSIF 538



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 14/217 (6%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +L       V  + + + V     E+              +  + +     + +  +   
Sbjct: 798  QLNSATISGVVSSSIGDAVNWAKAELDRSLPQGYQYDFKSEARQYVQEGNAMAMTFALAV 857

Query: 680  MLIYI--WIRFK-WYFALGAITTL------ILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++IY+   I+F+ W   +  + ++       L +   LG   + G   N+ +   ++TL+
Sbjct: 858  VIIYLVLAIQFESWRDPMVILVSVPLALSGALVVLNVLGIAGIAGATLNIYSQVGLVTLV 917

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G      +++ +  ++        +S  D I  S    L   + T+ A    ++P+    
Sbjct: 918  GLITKHGILMCEVAKEE--QLHNGLSRFDAIVHSATIRLRPIMMTTAAMVAGLIPLLFAM 975

Query: 790  GGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIY 824
            G   I  F++ M    G+ +    ++F+   I  F+ 
Sbjct: 976  GAGAIARFSMGMVIVAGLSIGTLFTLFVLPVIYTFLG 1012



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 73/187 (39%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           V +++ K +   V    + +  +       E+I+      +I    +++++         
Sbjct: 303 VFDLITKNLPSSVNGQIMYDKTVAINSSINEVIKTIGEATVIVLAVIILFLG---SLRAM 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  I T+ + +   L F  +FG   NL  + A++  IG  V+D +VV + +    +    
Sbjct: 360 IVPIITIPISLIGVLFFLQMFGFSINLLTLLALVLAIGLVVDDAIVVLENV---ERHVKE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             +  D       E     +  ++       PMA+  G        FA+ +A  + ++  
Sbjct: 417 GKTPFDAAIIGTREIALPVISMTITLAAVYSPMALMEGVTGSLFKEFALTLAGAVFISGI 476

Query: 811 SSIFIAA 817
           +++ ++ 
Sbjct: 477 AALTLSP 483


>gi|119963000|ref|YP_948242.1| AcrB/AcrD/AcrF family transporter [Arthrobacter aurescens TC1]
 gi|119949859|gb|ABM08770.1| putative transporter, AcrB/AcrD/AcrF family [Arthrobacter aurescens
           TC1]
          Length = 1074

 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 59/510 (11%), Positives = 146/510 (28%), Gaps = 38/510 (7%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
             L ++I     +  +         +  PS                    +     + V+
Sbjct: 12  RALIALITVFAAVFGVITMGS-LKQELIPSIEFPQIT---------VVTSMPGASPEVVD 61

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             L    +   + ++       + R   ++IT+ F      +   +++   +      L 
Sbjct: 62  KQLSQPLETALNSVEGLESTTSTSRNGVSQITMVFTYGSNLDRARNQIDRAISNAKRVLP 121

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            D +   +      +  IV    + D+      E + +++R  + ++   +       + 
Sbjct: 122 ADVEPQSIA-GNISDFPIVYLAVSSDKP---LSELNADLLRLSVPRLQKIDGVRGADVTG 177

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                +  +  P+ L     +   +S                 +    S      V+   
Sbjct: 178 GSSQHILIQPRPADLATTGASVQSISNALKNNGTLVPVGTIEDQGKTLSLQLGSPVDSLD 237

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            I G                                     ++                 
Sbjct: 238 IIKG---------------------LPLAGAKGAATIGAVADVSIEDDAPTSITRTNGKP 276

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                 + K +                ++                     S         
Sbjct: 277 TLALSVTKKPEADTVAISHAVRDAVGPMQEELGNNATFTPVFDQAPFIEKSIKDLTTEGL 336

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           +  G  + V+ + ++  +  LV   SI L++++T   +S  G +L + ++  + + IG  
Sbjct: 337 LGLGFAVAVILVFLMSVRSTLVTAVSIPLSLLITFIGISATGYSLNILTLGALTIAIGRV 396

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGA 484
           VD +I+V E I+      +    ++          I  S +T +   + + F G   G  
Sbjct: 397 VDDSIVVIENIKRHLSYGEHKLTAILTSIREVAGAITASTLTTVAVFLPIAFVGDLAGEL 456

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFI 514
            R FA+T+ +++L S+  +++IV  +  + 
Sbjct: 457 FRPFALTVTIALLSSLLVSLTIVPVLAYWF 486



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/241 (15%), Positives = 89/241 (36%), Gaps = 6/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              + +++  D              R+   P  S   +    + ++     +P        
Sbjct: 783  ETIAAVEQVDTPVSITSSNGQRTARVTVTPSGSNLGSVSTAVQERLAAVELPAGVTATIG 842

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                + +    + G+  +   AI  +I +         L  + ++    T  +G   + G
Sbjct: 843  GATTQQAESFRQLGLALLAAIAIVYVIMVAAFKSLVQPLILLISVPFAATGAVGLLLVTG 902

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT--TSISFRDLIDKSINETLGRSV 773
            +   L ++  +L L+G  V + +V+ D + +  K +     ++  D I     + L   +
Sbjct: 903  VPLGLPSLIGMLMLVGIVVTNAIVLIDLINQYRKPHDGSPGMNVADAITHGARQRLRPIL 962

Query: 774  YTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             T++A   ++ PMA+    GG  I    AI +  G+V + + ++ +   +   +   R K
Sbjct: 963  MTALATVFALTPMALGLTGGGGFISQPLAIVVIGGLVSSTALTLVLVPVLYKLVEGRREK 1022

Query: 830  N 830
             
Sbjct: 1023 K 1023



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/189 (16%), Positives = 80/189 (42%), Gaps = 9/189 (4%)

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
           +++++      + + +      K  ++L  +G++G+  +   +L+++         L   
Sbjct: 304 MQEELGNNATFTPVFDQAPFIEKSIKDLTTEGLLGLGFAVAVILVFLM---SVRSTLVTA 360

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++ L +  T    +  G   N+  + A+   IG  V+D +VV + +++++      ++ 
Sbjct: 361 VSIPLSLLITFIGISATGYSLNILTLGALTIAIGRVVDDSIVVIENIKRHLSYGEHKLT- 419

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
              I  SI E  G    +++      LP+A  G   G +   FA+ +   ++ +   S+ 
Sbjct: 420 --AILTSIREVAGAITASTLTTVAVFLPIAFVGDLAGELFRPFALTVTIALLSSLLVSLT 477

Query: 815 IAAPILLFI 823
           I   +  + 
Sbjct: 478 IVPVLAYWF 486


>gi|46143715|ref|ZP_00134561.2| COG0841: Cation/multidrug efflux pump [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 1039

 Score =  127 bits (317), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 58/565 (10%), Positives = 155/565 (27%), Gaps = 38/565 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL       + +  +  +P                   +     
Sbjct: 9   KRPVLAVCISLLITILGL-----QSINKLQVREYPEMTISIVT---------VKVNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +E  +          S     +  T+    +   +     ++  +  
Sbjct: 55  DASLMQALVTSQIEEAVAQADNIDYVTSSSGPSSSTTTIKMKLNTNPQMALADISAKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L        +  ++    +++  +   D++     + +  I R    Q        
Sbjct: 115 IRANLPSGIDDPSISVSSGSNDALMYIRFVSDEL--STPQITDYINRVVKPQFFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP ++     + A +       N +         +    +  + 
Sbjct: 173 SVDIFGAANFGLRIWLDPDKMAGNNLSGAAVLSALSANNLNTAAGNANGYYTVYKNKVES 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  + ++                        R         +           
Sbjct: 233 STPSVEELENVTIST-------------------TSDGRIVKLKDIAKVELDKYQDASRA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +           S     +     +    +  ++           +      A   S + 
Sbjct: 274 IADGKEAVVLAVSAATTANSLTVAKDIYPVFDLITKNLPSSVNGQIMYDKTVAINSSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL V+ + +   +  +V   +I +++I  L  L + G ++ L ++  +V
Sbjct: 334 VIKTIGEATVIVLAVIILFLGSLRAMIVPIITIPISLIGVLFFLQMFGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I V E +    ++ ++ F +  +G       +    IT       +    
Sbjct: 394 LAIGLVVDDAICVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLAAVYSPMALME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  ++ IS   A+++   M   +++    ++          ++    
Sbjct: 454 GVTGSLFKEFALTLAGAVFISGIAALTLSPMMSSRVLKEHNEENESRFSKCINTMLDKMT 513

Query: 539 AIQFMRARFWGVGISILFSICSICL 563
           A      R       ++        
Sbjct: 514 ACYTNMLRGVMSVRWLVVIFAMSIF 538



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 14/217 (6%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +L       V  + + + V     E+              +  + +     + +  +   
Sbjct: 798  QLNSATISGVVSSSIGDAVNWAKAELDRSLPQGYQYDFKSEARQYVQEGNAMAMTFALAV 857

Query: 680  MLIYI--WIRFK-WYFALGAITTL------ILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++IY+   I+F+ W   +  + ++       L +   LG   + G   N+ +   ++TL+
Sbjct: 858  VIIYLVLAIQFESWRDPMVILVSVPLALSGALVVLNVLGIAGIAGATLNIYSQVGLVTLV 917

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G      +++ +  ++        +S  D I  S    L   + T+ A    ++P+    
Sbjct: 918  GLITKHGILMCEVAKEE--QLHNGLSRFDAIVHSATIRLRPIMMTTAAMVAGLIPLLFAM 975

Query: 790  GGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIY 824
            G   I  F++ M    G+ +    ++F+   I  F+ 
Sbjct: 976  GAGAIARFSMGMVIVAGLSIGTLFTLFVLPVIYTFLG 1012



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 72/187 (38%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           V +++ K +   V    + +  +       E+I+      +I    +++++         
Sbjct: 303 VFDLITKNLPSSVNGQIMYDKTVAINSSINEVIKTIGEATVIVLAVIILFLG---SLRAM 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  I T+ + +   L F  +FG   NL  + A++  IG  V+D + V + +    +    
Sbjct: 360 IVPIITIPISLIGVLFFLQMFGFSINLLTLLALVLAIGLVVDDAICVLENV---ERHVKE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             +  D       E     +  ++       PMA+  G        FA+ +A  + ++  
Sbjct: 417 GKTPFDAAIIGTREIALPVISMTITLAAVYSPMALMEGVTGSLFKEFALTLAGAVFISGI 476

Query: 811 SSIFIAA 817
           +++ ++ 
Sbjct: 477 AALTLSP 483


>gi|307261044|ref|ZP_07542726.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869346|gb|EFN01141.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 1039

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/565 (10%), Positives = 156/565 (27%), Gaps = 38/565 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL       + +  +  +P                   +     
Sbjct: 9   KRPVLAVCISLLITILGL-----QSINKLQVREYPEMTISIVT---------VKVNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +E  +          S     +  T+    +   +     ++  +  
Sbjct: 55  DASLMQALVTSQIEEAVAQADNIDYVTSSSGPSSSTTTIKMKLNTNPQMALADISAKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L        +  ++    +++  +   D++     + +  I R    Q        
Sbjct: 115 IRANLPSGIDDPSISVSSGSNDALMYIRFVSDEL--STPQITDYINRVVKPQFFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP ++     + A +       N +         +    +  + 
Sbjct: 173 SVDIFGAANFGLRIWLDPDKMAGNNLSGAAVLSALSANNLNTAAGNANGYYTVYKNKVES 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  + ++                        R         +           
Sbjct: 233 STPSVEELENVTIST-------------------TSDGRIVKLKDIAKVELDKYQDASRA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +           S     +     +    +  ++           +      A   S + 
Sbjct: 274 IADGKEAVVLAVSAATTANSLTVAKDIYPVFDLITKNLPSSVNGQIMYDKTVAINSSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL V+ + +   +  +V   +I +++I  L  L + G ++ L ++  +V
Sbjct: 334 VIKTIGEATVIVLAVIILFLGSLRAMIVPIITIPISLIGVLFFLQMFGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ ++ F +  +G       +    IT       +    
Sbjct: 394 LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLAAVYSPMALME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  ++ IS   A+++   M   +++    ++          ++    
Sbjct: 454 GVTGSLFKEFALTLAGAVFISGIAALTLSPMMSSRVLKEHNEENESRFSKCINTMLDKMT 513

Query: 539 AIQFMRARFWGVGISILFSICSICL 563
           A      R       ++        
Sbjct: 514 ACYTNMLRGVMSVRWLVVIFAMSIF 538



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 14/217 (6%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +L       V  + + + V     E+              +  + +     + +  +   
Sbjct: 798  QLNSATISGVVSSSIGDAVNWAKAELDRSLPQGYQYDFKSEARQYVQEGNAMAMTFALAV 857

Query: 680  MLIYI--WIRFK-WYFALGAITTL------ILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++IY+   I+F+ W   +  + ++       L +   LG   + G   N+ +   ++TL+
Sbjct: 858  VIIYLVLAIQFESWRDPMVILVSVPLALSGALVVLNVLGIAGIAGATLNIYSQVGLVTLV 917

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G      +++ +  ++        +S  D I  S    L   + T+ A    ++P+    
Sbjct: 918  GLITKHGILMCEVAKEE--QLHNGLSRFDAIVHSATIRLRPIMMTTAAMVAGLIPLLFAM 975

Query: 790  GGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIY 824
            G   I  F++ M    G+ +    ++F+   I  F+ 
Sbjct: 976  GAGAIARFSMGMVIVAGLSIGTLFTLFVLPVIYTFLG 1012



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 73/187 (39%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           V +++ K +   V    + +  +       E+I+      +I    +++++         
Sbjct: 303 VFDLITKNLPSSVNGQIMYDKTVAINSSINEVIKTIGEATVIVLAVIILFLG---SLRAM 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  I T+ + +   L F  +FG   NL  + A++  IG  V+D +VV + +    +    
Sbjct: 360 IVPIITIPISLIGVLFFLQMFGFSINLLTLLALVLAIGLVVDDAIVVLENV---ERHVKE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             +  D       E     +  ++       PMA+  G        FA+ +A  + ++  
Sbjct: 417 GKTPFDAAIIGTREIALPVISMTITLAAVYSPMALMEGVTGSLFKEFALTLAGAVFISGI 476

Query: 811 SSIFIAA 817
           +++ ++ 
Sbjct: 477 AALTLSP 483


>gi|307249796|ref|ZP_07531774.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306858211|gb|EFM90289.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
          Length = 1039

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/565 (10%), Positives = 156/565 (27%), Gaps = 38/565 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL       + +  +  +P                   +     
Sbjct: 9   KRPVLAVCISLLITILGL-----QSINKLQVREYPEMTISIVT---------VKVNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +E  +          S     +  T+    +   +     ++  +  
Sbjct: 55  DASLMQALVTSQIEEAVAQADNIDYVTSSSGPSSSTTTIKMKLNTNPQMALADISAKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L        +  ++    +++  +   D++     + +  I R    Q        
Sbjct: 115 IRANLPSGIDDPSISVSSGSNDALMYIRFVSDEL--STPQITDYINRVVKPQFFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP ++     + A +       N +         +    +  + 
Sbjct: 173 SVDIFGAANFGLRIWLDPDKMAGNNLSGAAVLSALSANNLNTAAGNANGYYTVYKNKVES 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  + ++                        R         +           
Sbjct: 233 STPSVEELENVTIST-------------------TSDGRIVKLKDIAKVELDKYQDASRA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +           S     +     +    +  ++           +      A   S + 
Sbjct: 274 IADGKEAVVLAVSAATTANSLTVAKDIYPVFDLITKNLPSSVNGQIMYDKTVAINSSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL V+ + +   +  +V   +I +++I  L  L + G ++ L ++  +V
Sbjct: 334 VIKTIGEATVIVLAVIILFLGSLRAMIVPIITIPISLIGVLFFLQMFGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ ++ F +  +G       +    IT       +    
Sbjct: 394 LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLAAVYSPMALME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  ++ IS   A+++   M   +++    ++          ++    
Sbjct: 454 GVTGSLFKEFALTLAGAVFISGIAALTLSPMMSSRVLKEHNEENESRFSKCINTMLDKMT 513

Query: 539 AIQFMRARFWGVGISILFSICSICL 563
           A      R       ++        
Sbjct: 514 ACYTNMLRGVMSVRWLVVIFAMSIF 538



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 14/217 (6%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +L       V  + + + V     E+              +  + +     + +  +   
Sbjct: 798  QLNSATISGVVSSSIGDAVNWAKAELDRSLPQGYQYDFKSEARQYVQEGNAMAMTFALAV 857

Query: 680  MLIYI--WIRFK-WYFALGAITTL------ILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++IY+   I+F+ W   +  + ++       L +   LG   + G   N+ +   ++TL+
Sbjct: 858  VIIYLVLAIQFESWRDPMVILVSVPLALSGALVVLNVLGIAGIAGATLNIYSQVGLVTLV 917

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G      +++ +  ++        +S  D I  S    L   + T+ A    ++P+    
Sbjct: 918  GLITKHGILMCEVAKEE--QLHNGLSRFDAIVHSATIRLRPIMMTTAAMVAGLIPLLFAM 975

Query: 790  GGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIY 824
            G   I  F++ M    G+ +    ++F+   I  F+ 
Sbjct: 976  GAGAIARFSMGMVIVAGLSIGTLFTLFVLPVIYTFLG 1012



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 73/187 (39%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           V +++ K +   V    + +  +       E+I+      +I    +++++         
Sbjct: 303 VFDLITKNLPSSVNGQIMYDKTVAINSSINEVIKTIGEATVIVLAVIILFLG---SLRAM 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  I T+ + +   L F  +FG   NL  + A++  IG  V+D +VV + +    +    
Sbjct: 360 IVPIITIPISLIGVLFFLQMFGFSINLLTLLALVLAIGLVVDDAIVVLENV---ERHVKE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             +  D       E     +  ++       PMA+  G        FA+ +A  + ++  
Sbjct: 417 GKTPFDAAIIGTREIALPVISMTITLAAVYSPMALMEGVTGSLFKEFALTLAGAVFISGI 476

Query: 811 SSIFIAA 817
           +++ ++ 
Sbjct: 477 AALTLSP 483


>gi|126208069|ref|YP_001053294.1| acriflavine resistance protein [Actinobacillus pleuropneumoniae
           L20]
 gi|126096861|gb|ABN73689.1| acriflavine resistance protein [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 1039

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/565 (10%), Positives = 156/565 (27%), Gaps = 38/565 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL       + +  +  +P                   +     
Sbjct: 9   KRPVLAVCISLLITILGL-----QSINKLQVREYPEMTISIVT---------VKVNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +E  +          S     +  T+    +   +     ++  +  
Sbjct: 55  DASLMQALVTSQIEEAVAQADNIDYVTSSSGPSSSTTTIKMKLNTNPQMALADISAKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L        +  ++    +++  +   D++     + +  I R    Q        
Sbjct: 115 IRANLPSGIDDPSISVSSGSNDALMYIRFVSDEL--STPQITDYINRVVKPQFFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP ++     + A +       N +         +    +  + 
Sbjct: 173 SVDIFGAANFGLRIWLDPDKMAGNNLSGAAVLSALSANNLNTAAGNANGYYTVYKNKVES 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  + ++                        R         +           
Sbjct: 233 STPSVEELENVTIST-------------------TSDGRIVKLKDIAKVELDKYQDASRA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +           S     +     +    +  ++           +      A   S + 
Sbjct: 274 IADGKEAVVLAVSAATTANSLTVAKDIYPVFDLITKNLPSSVNGQIMYDKTVAINSSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL V+ + +   +  +V   +I +++I  L  L + G ++ L ++  +V
Sbjct: 334 VIKTIGEATVIVLAVIILFLGSLRAMIVPIITIPISLIGVLFFLQMFGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ ++ F +  +G       +    IT       +    
Sbjct: 394 LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLAAVYSPMALME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  ++ IS   A+++   M   +++    ++          ++    
Sbjct: 454 GVTGSLFKEFALTLAGAVFISGIAALTLSPMMSSRVLKEHNEENESRFSKCINTMLDKMT 513

Query: 539 AIQFMRARFWGVGISILFSICSICL 563
           A      R       ++        
Sbjct: 514 ACYTNMLRGVMSVRWLVVIFAMSIF 538



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 14/217 (6%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +L       V  + + + V     E+              +  + +     + +  +   
Sbjct: 798  QLNSATISGVVSSSIGDAVNWAKAELDRSLPQGYQYDFKSEARQYVQEGNAMAMTFALAV 857

Query: 680  MLIYI--WIRFK-WYFALGAITTL------ILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++IY+   I+F+ W   +  + ++       L +   LG   + G   N+ +   ++TL+
Sbjct: 858  VIIYLVLAIQFESWRDPMVILVSVPLALSGALVVLNVLGIAGIAGATLNIYSQVGLVTLV 917

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G      +++ +  ++        +S  D I  S    L   + T+ A    ++P+    
Sbjct: 918  GLITKHGILMCEVAKEE--QLHNGLSRFDAIVHSATIRLRPIMMTTAAMVAGLIPLLFAM 975

Query: 790  GGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIY 824
            G   I  F++ M    G+ +    ++F+   I  F+ 
Sbjct: 976  GAGAIARFSMGMVIVAGLSIGTLFTLFVLPVIYTFLG 1012



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 73/187 (39%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           V +++ K +   V    + +  +       E+I+      +I    +++++         
Sbjct: 303 VFDLITKNLPSSVNGQIMYDKTVAINSSINEVIKTIGEATVIVLAVIILFLG---SLRAM 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  I T+ + +   L F  +FG   NL  + A++  IG  V+D +VV + +    +    
Sbjct: 360 IVPIITIPISLIGVLFFLQMFGFSINLLTLLALVLAIGLVVDDAIVVLENV---ERHVKE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             +  D       E     +  ++       PMA+  G        FA+ +A  + ++  
Sbjct: 417 GKTPFDAAIIGTREIALPVISMTITLAAVYSPMALMEGVTGSLFKEFALTLAGAVFISGI 476

Query: 811 SSIFIAA 817
           +++ ++ 
Sbjct: 477 AALTLSP 483


>gi|119486330|ref|ZP_01620389.1| cation efflux system protein [Lyngbya sp. PCC 8106]
 gi|119456543|gb|EAW37673.1| cation efflux system protein [Lyngbya sp. PCC 8106]
          Length = 1048

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 70/592 (11%), Positives = 182/592 (30%), Gaps = 53/592 (8%)

Query: 5   PWLVIL-YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            WLV++   ++  +G+     N + +  LD FP+  P               + ++ +  
Sbjct: 13  RWLVVIGAIIVTFLGI-----NTVSKMPLDVFPNFAPP-------------QVEIQTEAP 54

Query: 64  DFVNGFLQMYSD-ELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 ++      + S +           +     + + ++F            VT  L
Sbjct: 55  GLAPEEVESLVTLPIESAVNGTPGLETVRSASAVGLSVVKVTFNWGTDIYLARQFVTERL 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ-VISHAIEQSMEIIRQRIDQIGISE 178
           Q    KL    +   +   +    +I+     ++    +  ++    + R   +++    
Sbjct: 115 QQAAEKLPESAETPQISPISSPIGTIIQYAFTVESGGKTTLMDVRRLVDRDITNRLLAVP 174

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q +     + Q     DP++L+    +   ++      N +  G             
Sbjct: 175 GVTQVIAYGGDVRQYQVLVDPAKLQAFDISLEDVTTAAEAANTNAAGGFLISPDKELLIR 234

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +E   ++    +                                  ++    A+  
Sbjct: 235 GIGRIESIQDLEQSVIT--------------------ARQGTPVLLRDVADVKIGEALKR 274

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
               L        + + +         +        ++          V  R       S
Sbjct: 275 GDGSLNGKRAVVVMVNKQPLADTPSVTKAVESAMQEVQTSLPSDVEVTVTFRQSDFIEAS 334

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               + +      +V I+L + ++  +  ++   +I L++++ L +++L G  +   ++ 
Sbjct: 335 IKNVRNSLRDGIIIVSIILLLFLMNWRTAIITLSAIPLSLLIGLMIMNLFGQGINTMTLG 394

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALI 472
           G+ + IG  VD +I+  E      RKNQ        F  +         ++  S +   +
Sbjct: 395 GLAVAIGSVVDDSIVDMENCYRGLRKNQQLENPKHPFQVVYETSVEVRVSVLFSTVIIAV 454

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
               +F      G       +   +SI  S F A+++  A+  F++  +K+   +     
Sbjct: 455 IFAPIFSLTGVEGRIFAPMGVAYLISIFASTFVALTLSPALCAFLLASQKLPEDETWISR 514

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
               +   +    ++     +  +I   I S+ +  T G  +  +F+    +
Sbjct: 515 LSQQLYQPLLKFSIQFPKVIIFTAIAAFITSLVIFPTLGRVFLPEFQERSLV 566



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 90/246 (36%), Gaps = 11/246 (4%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            +       + L+ V           I+ +N          +  +   SV      E+ + 
Sbjct: 780  VDTSIGSKIPLAQVARIDYGTGPNTINRENVSRLIVVSANVSGRDLGSVVDEIKGEINQN 839

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
                               + S+ L+  G + +++  IA+L+Y  ++     +   +  L
Sbjct: 840  VHPPTGYFIQYGGQFESEERASQNLLVFGSLALVV--IAVLMYFAVK---SVSAMMMIML 894

Query: 701  ILDITKTLGFFA--LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             L +  T G F+  L G   ++ ++   +TL G +  + +++ D      +     I  +
Sbjct: 895  NLPLAITGGIFSVALGGGVLSVASMVGFITLFGVATRNGLLLVDNYN---QKIAEGIPLK 951

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +I     E L   + T+  + + ++P+A +G         P+A  ++    SS  +   
Sbjct: 952  RVIFDGSTERLVAILMTAFTSALGMVPLA-FGTGTGKEILQPLAVVVLGGLFSSTVLTLL 1010

Query: 819  ILLFIY 824
            +L  +Y
Sbjct: 1011 VLPALY 1016



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 56/134 (41%), Gaps = 6/134 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MR 745
           W  A+  ++ + L +   L    LFG   N   +  +   IG  V+D +V  +     +R
Sbjct: 360 WRTAIITLSAIPLSLLIGLMIMNLFGQGINTMTLGGLAVAIGSVVDDSIVDMENCYRGLR 419

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           KN +L      F+ + + S+   +     T + A I   P+    G     FA PM    
Sbjct: 420 KNQQLENPKHPFQVVYETSVEVRVSVLFSTVIIAVI-FAPIFSLTGVEGRIFA-PMGVAY 477

Query: 806 VVAASSSIFIAAPI 819
           +++  +S F+A  +
Sbjct: 478 LISIFASTFVALTL 491


>gi|333009989|gb|EGK29424.1| cation efflux system protein cusA [Shigella flexneri K-272]
          Length = 1047

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 173/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPSQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIVSLPLGLCIAFIVMPFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-----------SVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +   + Q           + +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEERQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   +++ +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMVGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLQQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 95/288 (32%), Gaps = 16/288 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI--LLFIYDWRAKN 830
                 G  V+   A PM  G++ A   S+FI      L++++  R +N
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRN 1047


>gi|224367169|ref|YP_002601332.1| RndA [Desulfobacterium autotrophicum HRM2]
 gi|223689885|gb|ACN13168.1| RndA [Desulfobacterium autotrophicum HRM2]
          Length = 1163

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/518 (13%), Positives = 158/518 (30%), Gaps = 38/518 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN ++V+L +    +  ++A+ N    + LD  P       I          +       
Sbjct: 11  NNKFMVLLTTFFVIVAGILAMIN----TPLDAIPDLSDVQVI---------IYTQYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +          +    +         + + L F D         +V  +L  V
Sbjct: 58  PEVVEDQVTYPLTTAMLSVPFAKVVRGYSFFGYSFVYLIFEDGTDIYWARSRVMEYLNFV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + +L V    +L    T                 +   E           ++       +
Sbjct: 118 SDRLPVGVTPSLGPDATGVGWVYEYI-LKDTTGKTDLQELRSIQDWFLRYELTAVSGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + Q   E +P++L     +  K+       N+   G +  +            
Sbjct: 177 VASIGGFVKQYQVEVNPNKLASYNLSIRKIKEAIQRSNSDVGGKLIEMGETEFMVRGLGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +I                    + +S D+ G     +   D +  P         
Sbjct: 237 IKSIEDIK------------------QIAVSVDDKGTPVLLKDVADIVIGPELRRGILEW 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +    IE        L+ G       I           +    
Sbjct: 279 NGEGETVGGIVIMRYGENALKVIERVKEKLKELQKGLPEGVEIIAGYDRSSLIERAVETL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           KG       +V ++  + +L+ +   VA F++ + ++++  ++   G    + S+ GI +
Sbjct: 339 KGKLTEEMTVVALICILFLLHFRSAFVAIFTLPVGILMSFLIMYPFGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKN---QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            IG+ VD++I++ E   +   ++   +S    +          +F S +   ++ + +F 
Sbjct: 399 AIGVMVDASIVMVENAHKHLERDKGRKSHQQIIIDASKEVGPALFFSLLIITVSFLPVFS 458

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                G   R  A T   ++  S   AI+I+  +M F 
Sbjct: 459 LMEQSGRLFRPLAYTKTTAMAASSILAITIIPVLMTFF 496



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 64/165 (38%), Gaps = 7/165 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             +++ I +L  +  R     A  AI TL + I  +      FGI  N+ ++  +   IG
Sbjct: 346 MTVVALICILFLLHFR----SAFVAIFTLPVGILMSFLIMYPFGINANIMSLGGIAIAIG 401

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPMAV 788
             V+  +V+ +   K+++      S + +I  +  E      ++ +     F+ V  +  
Sbjct: 402 VMVDASIVMVENAHKHLERDKGRKSHQQIIIDASKEVGPALFFSLLIITVSFLPVFSLME 461

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G +    A      +  ++  +I I   ++ F       + ++
Sbjct: 462 QSGRLFRPLAYTKTTAMAASSILAITIIPVLMTFFVREETIDPKL 506



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/339 (12%), Positives = 92/339 (27%), Gaps = 12/339 (3%)

Query: 506  IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
              R++    +         I              +Q +     G                
Sbjct: 822  GTRSVFSERVTGGNYLDFTIKREEIARYGLLVQDVQDIITTAIGGMNVTYTIEGLERYPV 881

Query: 566  THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                N  +     +   V    P    +    L  + I                 +    
Sbjct: 882  NLRYNREMRDNIEMIKRVFVPTPSGAQIPLIQLADISIHKGPAGIKSENSKRTAWVFVDI 941

Query: 626  GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
             D    T V +  K    +I              +  ++  +   + V  + + + I ++
Sbjct: 942  RDMDIGTYVKQARKLVDEKIKLPPGYSLIWSGQYEYMQKARKTLNIIVPATLLVIFILLF 1001

Query: 686  IRFKWYFALGAITT-LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----- 739
            I F     +  +   L   +        L G   ++      + L G +    +V     
Sbjct: 1002 IHFNNIVEVIIVMASLPFALLGGFWLIYLLGYNMSVAVGVGFIALSGLATETGIVMLVYL 1061

Query: 740  --VYDRMRKNMKLYTTSISFRDLIDKSINETLGR---SVYTSMAAFISVLPMAVWGGSVI 794
              V+ R R +  L   +   +  I +   + +     +V T++   + V+  A  G  ++
Sbjct: 1062 DEVFKR-RTDQNLMNNASDLQSSIIEGAVDRVRPKIMTVATTLIGLLPVMYGAGAGSQIM 1120

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               A PM  G++ +   ++ I   +      W  K   +
Sbjct: 1121 KRIAAPMVGGLISSTIMTLIIIPVLYDMWKTWEIKKKNL 1159


>gi|167567777|ref|ZP_02360693.1| acriflavin resistance protein [Burkholderia oklahomensis EO147]
          Length = 1068

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 68/639 (10%), Positives = 161/639 (25%), Gaps = 51/639 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  MI       A P  L ++  D  PS                  ++   
Sbjct: 8   LKRPYTFIVMAIMILL-----ATPLALMRTPTDVLPSIDIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           + +      +      +        +                I +        +    + 
Sbjct: 50  NYNGLSAQEMTDRITSVHERTLTTTVGNIQHIESQTLPGIAIIKIFLQPGASTQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L+++ +   I ++    +   +     + +   +     Q+ 
Sbjct: 110 VSAAQAIVRQMPQGATPPLIISYSASSIPVIQLGLSSQSMSEQ--QLADVAMNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + D   L     T A +       N         +     
Sbjct: 168 TIPGAQVPYPYGGRTRVISVDLDTQALMAKGLTPADVVNAVNAQNLVLPTGTAKIGQTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G     +   E+                      +     G    +     ++     
Sbjct: 228 RVGTNASPDTVAEL--------------------NRLPVQTTGGATLYLSDVAHVRDGFT 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    ++T   L   +                    
Sbjct: 268 PQTNVVRKDGERGVLVSVLKSGDASTLAVVDTLKALLPSIENTLPEDLKITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  LS LG T+ + 
Sbjct: 328 DAAIQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLLALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I         +  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTGLREAILEGAGEIAVPALVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM---KSIDINPLS 529
            +FF  G         A  +  ++L S   + ++V  + + +    +     +      S
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFSKHRPDADAAASAAKPS 507

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           RF          F R R   + +  +  +              +       LG      V
Sbjct: 508 RFARFHHAFEHAFERLRAGYIVLLSVLLVRRRFYASLFVGFCVLSTGLVFTLGRDFFPAV 567

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           D   +R ++ +     I       ++      +  P   
Sbjct: 568 DADNIRLHMRAPTGYRIEETARLADQVEQTIREAVPAAE 606



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/379 (12%), Positives = 118/379 (31%), Gaps = 6/379 (1%)

Query: 447 SVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           S   ++     + A   +  S   + I  + L              + ++ L      I 
Sbjct: 111 SAAQAIVRQMPQGATPPLIISYSASSIPVIQLGLSSQSMSEQQLADVAMNFLRPQLITIP 170

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
             +    +  R + +             +     +  + A+   +         +   + 
Sbjct: 171 GAQVPYPYGGRTRVISVDLDTQALMAKGLTPADVVNAVNAQNLVLPTGTAKIGQTEYRVG 230

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
           T+     +     + +       + LS V    +         +        +  L+   
Sbjct: 231 TNASPDTVAELNRLPVQTTGGATLYLSDVAHVRDGFTPQTNVVRKDGERGVLVSVLKSGD 290

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYI 684
             ++A    L+ +   I   +P                  I+  I   +I + +  ++ +
Sbjct: 291 ASTLAVVDTLKALLPSIENTLPEDLKITPLFDQSVFVDAAIQGVIHEALIAAVLTAMMIL 350

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   L    ++ L I  +L   +  G   N+  +  +   +G  V+D  V  + +
Sbjct: 351 LFLGNWRSTLIIAISIPLSIFTSLLALSALGETINIMTLGGLALAVGILVDDATVTIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +++ L       R+ I +   E    ++ +++   I  +PM    G     F +P+A  
Sbjct: 411 ERHLHL---GTGLREAILEGAGEIAVPALVSTLCICIVFVPMFFLTGVARYLF-VPLAEA 466

Query: 805 IVVAASSSIFIAAPILLFI 823
           +V A  +S  ++  ++  +
Sbjct: 467 VVFAMLASYVLSRTLVPTL 485



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 61/162 (37%), Gaps = 7/162 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  ++ +   +        + G   ++ A+   +  +G
Sbjct: 893  VAMAIVLVYLLIVVNFQSWLDPLIIVSAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 952

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
             +  + ++V    R   +             ++    +   + T++A  I ++PMA+   
Sbjct: 953  VATANSILVVAFAR---QRLEAGAPPLTAALEAGATRIRPVLMTALAMIIGMIPMALGLG 1009

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G          +  G++ A  S++     +   ++   AK+
Sbjct: 1010 VGAEQNAPLGRAVIGGLLFATVSTLLFVPLVFAGVHQRLAKH 1051


>gi|323700477|ref|ZP_08112389.1| acriflavin resistance protein [Desulfovibrio sp. ND132]
 gi|323460409|gb|EGB16274.1| acriflavin resistance protein [Desulfovibrio desulfuricans ND132]
          Length = 1036

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/584 (8%), Positives = 153/584 (26%), Gaps = 38/584 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN   ++++ +I   G++               P       I +G+        V     
Sbjct: 10  NNRTSLVIFLLIAVSGVMT-----FFSIPKGEDPDFT----IRVGI-----ISTVFPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS-RFKENIADKVTLFLQG 121
              V   +    +E    +              + I + F DS +  +    K+   +  
Sbjct: 56  PQRVEELVTDKLEEKIREIDGVKTVESQSMSGLSIIKVEFEDSIKDMQPYWQKLRNKVDD 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + +  ++         IV++            +          D++   +   
Sbjct: 116 AAPDLPEEAQTPVVNDEFGDVYGIVIALTGDGFSYRELKD----AADDMRDELLKLKGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  +   SR+     +   ++                         N  
Sbjct: 172 KVERWGVQDERIFVDFTNSRMAAAGVSPFVLAQMI-------------------DSQNTL 212

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  +    +                                  +I +  +      
Sbjct: 213 QPSGSSMVGPERIVIEPTGEFKGVEDIYSLSIRPPGKKTSVRLADVADISRGFSDPPSTM 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     +    A+      +             ++ + L+          +     
Sbjct: 273 ARYNGKPCLILAVSMAEGGNITELGDRIAQRLDQLKANMFVGLDTNLVVFQPDYVRKAIN 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + +   ++V+ ++    + G++A   + + ++  +AL+      L   SIA ++
Sbjct: 333 DFMVNLLESFAFVVVIILLFAGLRTGVIAGSLVPMAMLGCIALMPYFDVGLQRISIASLI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G+ VD+ ++V+E I       +    +     +  +  +  +++T + A + +    
Sbjct: 393 ISLGILVDNGVVVSEAILVRLAAGEDRLKAATGAVAELWMPLLAASLTTIFAFLPIPLAT 452

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
              V  F  ++ + + +++  +  +  +M+  +  Y     + +   +          + 
Sbjct: 453 THPVGEFCSSLFVVVTLTLACSWGLSMSMVPMMCYYLLRPKLTVQTFTSRIYRFYRALLL 512

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
           +           I+         F              Q  +  
Sbjct: 513 WSLRHRTVFVAGIVLCCVVAGWAFQFLPKMFFPPNERAQFTIDF 556



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 93/276 (33%), Gaps = 8/276 (2%)

Query: 557  SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
             I  +        N+                 V LS V +     Q  DI  ++      
Sbjct: 743  IIPILLRNDEGFRNHLDKLDSLNVYSYDTGISVPLSQVATTRLDWQPSDIRRRDQGRTMT 802

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VII 675
                +           +V   V++ + +        N E  G        +  I   + +
Sbjct: 803  IKADVADGYYAQSILAKVRPAVQQLMGKAD-WPLGYNVEYGGEFEESAEAQAAINANMPL 861

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   +++ +  +F      L  + TL  + I  + G  A     F   A+  +++L+G  
Sbjct: 862  AMGLLVLVLIFQFNSVRRPLIILLTLPPMIIGISTGMLA-TNSPFGFMAMLGMISLLGII 920

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            VN+ +++ DR+          +   D I  S  E     + T+    I ++P+++ GG +
Sbjct: 921  VNNAIMLIDRI---EIQRGRGLDLADAIVLSSMERARPIIMTATTTIIGMVPLSLQGGEM 977

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                A  +  G+ VA   ++ +   +    +    K
Sbjct: 978  WRPMANLIMSGLTVATVLTLVLCPVLYSLFFRQGFK 1013



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 66/187 (35%), Gaps = 3/187 (1%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            L     + G+       +     ++   + +    N  +  P   R+ I   +V ++ S
Sbjct: 282 ILAVSMAEGGNITELGDRIAQRLDQLKANMFVGLDTNLVVFQPDYVRKAINDFMVNLLES 341

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
              +++ I +       + A + + + +   +     F +     ++A+++  +G  V++
Sbjct: 342 FAFVVVIILLFAGLRTGVIAGSLVPMAMLGCIALMPYFDVGLQRISIASLIISLGILVDN 401

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
            VVV + +   +               ++ E     +  S+    + LP+ +     +G 
Sbjct: 402 GVVVSEAI---LVRLAAGEDRLKAATGAVAELWMPLLAASLTTIFAFLPIPLATTHPVGE 458

Query: 797 FAIPMAF 803
           F   +  
Sbjct: 459 FCSSLFV 465


>gi|311067146|ref|YP_003972069.1| transporter involved in surfactin self-resistance [Bacillus
           atrophaeus 1942]
 gi|310867663|gb|ADP31138.1| transporter involved in surfactin self-resistance [Bacillus
           atrophaeus 1942]
          Length = 1054

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/707 (10%), Positives = 187/707 (26%), Gaps = 60/707 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + ++  ++   GL   L         +  P                        
Sbjct: 9   LKNKFAVWLMTIIVTVAGLYAGL-----NMKQESIPDVNMPYLT---------ISTTYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    ++    +    +   +  +  + + + +   +  +    +    L+
Sbjct: 55  ATPSQVTDEVTKPIEQAVQNVDGVSVVTSTSYENASSVMIEYDYEKDMDKAKTEAAEALE 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  D K   +   +     I+    + D       + + ++    + ++  +E  
Sbjct: 115 NA--SLPDDAKDPEISRYSMNSFPILTLSVSSD--KDSLEDLTKKVENGLVPKLEGTEGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       +L+        +       + +    ++       S    
Sbjct: 171 ASVQVSGQQVEEVEFSFKEDKLKDYGLDKDTVKQVIQGSDVTTPLGLYTFGKQEKSVVVS 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +E   ++  + +  A+AN    +       S     A +  +            V   
Sbjct: 231 GDIESIKDLKNMRIPTASANSGSASSAAASSSSASSAAAAQSAQAASQAQQSASTDVPTV 290

Query: 301 RVLTAPVI-----------------NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK 343
           ++     I                            +     +                 
Sbjct: 291 KLSDIADIKDVRKAESISRTNGKDSIGINIIKANDANTVEVADQIKDE-LKQYKKDNKGF 349

Query: 344 LNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLA 403
                         S           A   ++++ + +   K  L++  SI L++++ L 
Sbjct: 350 QYSSTLDMAEPITESVDTMLSKAVFGAIFAIVIILLFLRDIKSTLISVVSIPLSLLIALL 409

Query: 404 LLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAY 460
            L+ L  TL + ++  + + IG  VD +I+V E I    R           +       +
Sbjct: 410 ALNQLDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGAALVREATKEMF 469

Query: 461 STIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
             I  S I  +   + L   GG        FA+T+  ++  S+  +I++V  +   + + 
Sbjct: 470 KPIMSSTIVTIAVFLPLALVGGQIGELFMPFALTIVFALAASLLISITLVPMLAHSLFKK 529

Query: 518 K----KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
                 +K+ +  P          +           +   ++       +          
Sbjct: 530 SLSGAPVKAKEHKPGRLANFYKKVLNWSLSHKWITSIIAVLMLLGSLFLVPLIGASYLPS 589

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIG--------------DISFQNFDGEKNFLV 619
           D +  +Q+          S      E  +                        G  N  +
Sbjct: 590 DSEKTMQITYSPEPGETKSEAEDEAEKAEKILLDRKHVDTVQYSLGSENPLAGGNSNGAL 649

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
                  D+    +  + V K+I +       ++ +      + EL 
Sbjct: 650 FYVKYEDDTPDFDKEKDNVLKEIKKQSDRGEWKSQDFSSSGNNNELT 696



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 89/242 (36%), Gaps = 4/242 (1%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V LS +    +  +   IS  N        +             ++ + +K+   +    
Sbjct: 290 VKLSDIADIKDVRKAESISRTNGKDSIGINIIKANDANTVEVADQIKDELKQYKKDNKGF 349

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                 ++  P I+  +       V  +  A++I +         L ++ ++ L +   L
Sbjct: 350 QYSSTLDMAEP-ITESVDTMLSKAVFGAIFAIVIILLFLRDIKSTLISVVSIPLSLLIAL 408

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                  I  N+  + A+   IG  V+D +VV + + + M+L    +    L+ ++  E 
Sbjct: 409 LALNQLDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGAALVREATKEM 468

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               + +++      LP+A+ GG +      FA+ + F +  +   SI +   +   ++ 
Sbjct: 469 FKPIMSSTIVTIAVFLPLALVGGQIGELFMPFALTIVFALAASLLISITLVPMLAHSLFK 528

Query: 826 WR 827
             
Sbjct: 529 KS 530



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 88/221 (39%), Gaps = 8/221 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               +         S   T +   V+KK+ ++     +            +   K  + ++
Sbjct: 831  DGKVYADVTGEVTSDNVTSISAAVQKKVDKLELPDNVSVDTGGVSADIADSFTKLGLAML 890

Query: 675  ISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             +   + + + I F    A  AI  +L   +   L    + G   +L A+  +L LIG  
Sbjct: 891  AAIAIVYLVLVITFGGALAPFAILFSLPFTVIGALVGLYVSGETISLNAMIGMLMLIGIV 950

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
            V + +V+ DR+   +      +S R+ + ++ +  L   + T++A   +++P+A+    G
Sbjct: 951  VTNAIVLIDRV---IHKEAEGLSTREALLEAGSTRLRPILMTAIATIGALIPLALGFEGG 1007

Query: 791  GSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              VI     + +  G++ +   ++ I   +   +  +R K 
Sbjct: 1008 SQVISKGLGVTVIGGLISSTLLTLLIVPIVYEVLAKFRRKK 1048


>gi|270157858|ref|ZP_06186515.1| RND family cation/multidrug resistance efflux protein [Legionella
           longbeachae D-4968]
 gi|269989883|gb|EEZ96137.1| RND family cation/multidrug resistance efflux protein [Legionella
           longbeachae D-4968]
          Length = 1036

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/567 (11%), Positives = 159/567 (28%), Gaps = 35/567 (6%)

Query: 19  LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78
           LLI  P  + ++  D FP                           D +   +    +   
Sbjct: 2   LLIIGPLAIMRTPTDIFPDINIPVV---------SVVWTYTGLPPDEMGNRITSVFERAV 52

Query: 79  SF-LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVT 137
           +  +              + + L F      +    +VT   Q +   L       L+++
Sbjct: 53  TTTVNDIEHIESESLIGVSVVKLYFQKGVNVDMALSQVTAIAQTMLRNLPPGTLPPLILS 112

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                + ++    +   +     + +         Q+   +           + Q+  + 
Sbjct: 113 YKASTVPVLQLVLSSSTIPEQ--KLNDIGNNFIRTQLATVQGASLPYPYGGKIRQIMVDL 170

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           D   ++    +  +++   +  N         +                VE+        
Sbjct: 171 DTQAMQTYGISAKEVNEAILAQNLIIPAGTQKIGEYEYIVKLNGSPLAAVEL-------- 222

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                        D+       R  +     ++    A   +   +              
Sbjct: 223 ------------NDVPVKTTPGRILYIRDVGHVRDGFAPQTNIVRVDGHRAVMMSVEKTG 270

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
             S    +     L   ++                     +         I A L  +++
Sbjct: 271 NASTLDIVSRVKGLIPKIKEMLPDGLQLSYFADQSIFVTAAIRGVITEGVIAAALTGLMI 330

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
            + +   +  L+   SI L++I ++ +LS LG T+ + ++ G+ L +G+ VD   +  E 
Sbjct: 331 LLFLGSVRSTLIITLSIPLSIITSITILSALGETINIMTLGGLALAVGILVDDATVAIEN 390

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR---GFAITMGL 494
           I     + + V  ++  G  +       S +   I  V +FF GG A       A  +  
Sbjct: 391 INWNLEQGKEVEQAILDGAKQIAIPALVSTLCICIVFVPMFFLGGVAQYLFVPLAEAVIF 450

Query: 495 SILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554
           ++L+S   + ++V  +  + +R  ++ + +    S    I      +F   R        
Sbjct: 451 AMLMSYVLSRTLVATLAKYWLRKHELSAQEEKKKSLLDRIHGKFEEKFTLLRSRYFVALS 510

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQL 581
                +   + +     G+        
Sbjct: 511 WVLNNAKFFITSFLGFVGVSIVLLWPW 537



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/200 (14%), Positives = 80/200 (40%), Gaps = 7/200 (3%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           ++  +K+ + + + LS   +  I      R +I +G++   ++ + +L+++         
Sbjct: 284 LIPKIKEMLPDGLQLSYFADQSIFVTAAIRGVITEGVIAAALTGLMILLFLG---SVRST 340

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L    ++ L I  ++   +  G   N+  +  +   +G  V+D  V  + +  N+     
Sbjct: 341 LIITLSIPLSIITSITILSALGETINIMTLGGLALAVGILVDDATVAIENINWNL---EQ 397

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
                  I     +    ++ +++   I  +PM   GG     F +P+A  ++ A   S 
Sbjct: 398 GKEVEQAILDGAKQIAIPALVSTLCICIVFVPMFFLGGVAQYLF-VPLAEAVIFAMLMSY 456

Query: 814 FIAAPILLFIYDWRAKNARI 833
            ++  ++  +  +  +   +
Sbjct: 457 VLSRTLVATLAKYWLRKHEL 476



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 86/261 (32%), Gaps = 8/261 (3%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                 + + +        +     +L+    S          ++ +     D    +   
Sbjct: 773  NDLRNIPIGSLTVPSQLQILGAFATLKRTWTSVVESHYNVQPVIDIFATIQDRDLGSVAS 832

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRF-KWYFA 693
            ++ K        +    +  I G   +++    G+  G+  S + + + I I F  W   
Sbjct: 833  DIEKVIEQTKKDVPKGSSVVIRGQIDTKDHAFSGLYWGLAFSILLVYLLIVINFQSWTDP 892

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
               IT L   I        L     ++ A+   +  +G +  + +++    R ++    T
Sbjct: 893  FIIITALPAAIAGISWMLFLTHTPLSVPALTGAIMCMGVATANSILIISFARDHLA---T 949

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAAS 810
              +      ++    L   + T++A  I + PMA+    GG         +  G+  A  
Sbjct: 950  ENNPMQAALEAGKTRLRPVMMTALAMIIGMFPMALGLGDGGEQNAPLGRAVIGGLSFATL 1009

Query: 811  SSIFIAAPILLFIYDWRAKNA 831
            +++F    +   I++   K  
Sbjct: 1010 ATLFFVPSVFYVIHERNLKKK 1030


>gi|303251546|ref|ZP_07337720.1| acriflavine resistance protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252141|ref|ZP_07534040.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302649544|gb|EFL79726.1| acriflavine resistance protein [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860441|gb|EFM92455.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 1039

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/565 (10%), Positives = 156/565 (27%), Gaps = 38/565 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL       + +  +  +P                   +     
Sbjct: 9   KRPVLAVCISLLITILGL-----QSINKLQVREYPEMTISIVT---------VKVNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +E  +          S     +  T+    +   +     ++  +  
Sbjct: 55  DASLMQALVTSQIEEAVAQADNIDYVTSSSGPSSSTTTIKMKLNTNPQMALADISAKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L        +  ++    +++  +   D++     + +  I R    Q        
Sbjct: 115 IRANLPSGIDDPSISVSSGSNDALMYIRFVSDEL--STPQITDYINRVVKPQFFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP ++     + A +       N +         +    +  + 
Sbjct: 173 SVDIFGAANFGLRIWLDPDKMAGNNLSGAAVLSALSANNLNTAAGNANGYYTVYKNKVES 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  + ++                        R         +           
Sbjct: 233 STPSVEELENVTIST-------------------TSDGRIVKLKDIAKVELDKYQDASRA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +           S     +     +    +  ++           +      A   S + 
Sbjct: 274 IADGKEAVVLAVSAATTANSLTVAKDIYPVFDLITKNLPSSVNGQIMYDKTVAINSSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL V+ + +   +  +V   +I +++I  L  L + G ++ L ++  +V
Sbjct: 334 VIKTIGEATVIVLAVIILFLGSLRAMIVPIITIPISLIGVLFFLQMFGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ ++ F +  +G       +    IT       +    
Sbjct: 394 LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLAAVYSPMALME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  ++ IS   A+++   M   +++    ++          ++    
Sbjct: 454 GVTGSLFKEFALTLAGAVFISGIAALTLSPMMSSRVLKEHNEENESRFSKCINTMLDKMT 513

Query: 539 AIQFMRARFWGVGISILFSICSICL 563
           A      R       ++        
Sbjct: 514 ACYTNMLRGVMSVRWLVVIFAMSIF 538



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 14/217 (6%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +L       V  + + + V     E+              +  + +     + +  +   
Sbjct: 798  QLNSATISGVVSSSIGDAVNWAKAELDRSLPQGYQYDFKSEARQYVQEGNAMAMTFALAV 857

Query: 680  MLIYI--WIRFK-WYFALGAITTL------ILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++IY+   I+F+ W   +  + ++       L +   LG   + G   N+ +   ++TL+
Sbjct: 858  VIIYLVLAIQFESWRDPMVILVSVPLALSGALVVLNVLGIAGIAGATLNIYSQVGLVTLV 917

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G      +++ +  ++        +S  D I  S    L   + T+ A    ++P+    
Sbjct: 918  GLITKHGILMCEVAKEE--QLHNGLSRFDAIVHSATIRLRPIMMTTAAMVAGLIPLLFAM 975

Query: 790  GGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIY 824
            G   I  F++ M    G+ +    ++F+   I  F+ 
Sbjct: 976  GAGAIARFSMGMVIVAGLSIGTLFTLFVLPVIYTFLG 1012



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 73/187 (39%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           V +++ K +   V    + +  +       E+I+      +I    +++++         
Sbjct: 303 VFDLITKNLPSSVNGQIMYDKTVAINSSINEVIKTIGEATVIVLAVIILFLG---SLRAM 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  I T+ + +   L F  +FG   NL  + A++  IG  V+D +VV + +    +    
Sbjct: 360 IVPIITIPISLIGVLFFLQMFGFSINLLTLLALVLAIGLVVDDAIVVLENV---ERHVKE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             +  D       E     +  ++       PMA+  G        FA+ +A  + ++  
Sbjct: 417 GKTPFDAAIIGTREIALPVISMTITLAAVYSPMALMEGVTGSLFKEFALTLAGAVFISGI 476

Query: 811 SSIFIAA 817
           +++ ++ 
Sbjct: 477 AALTLSP 483


>gi|291287386|ref|YP_003504202.1| acriflavin resistance protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290884546|gb|ADD68246.1| acriflavin resistance protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 1091

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/545 (12%), Positives = 163/545 (29%), Gaps = 27/545 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            +   V        +GL+  +         +  P  +    +           + L    
Sbjct: 18  TSKLTVAFIIACAALGLVAIMFT-----PREENPQIIVPGAM---------VQVTLPGAS 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    + +   +                +++ F   + KE    K+   + G 
Sbjct: 64  SEEIEELVVRPLESIVQQISGVDHTYSISNNSVGILSIEFEVGQDKERSLVKLYDRILGQ 123

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL       ++ +    ++ I+      ++   +A+++   +  + +D I        
Sbjct: 124 RDKLPPQASLPIIRSIDVDDVPILTFTLASEKYSDYALKR---LADRMMDGIRSLPDVSD 180

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  E +P +L+    T  ++    +  N S                NQ +
Sbjct: 181 IYVKGGADRTIRIEIEPEKLQSYGTTLDQVKAIIMAGNVSAPLGTVVQH-----GENQDV 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D   ++                  + DI     G                    D   
Sbjct: 236 FMDGFIVAAEDFEHLIVGNYGGRPIYLGDIGTVVDGPPTDRVKLTRFAFGSGDERFDKFT 295

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      + KA  +  F  +        +R   +P  ++I+  RN G    +    
Sbjct: 296 QPEVPAVTLAVAKKAGTNAVFVADDVIDRINTMRDKFVPNDVDIIITRNDGKKADAAVNL 355

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                 +A   + ++ +I L  K  L+   +I L + LT+    L G T+   ++  +++
Sbjct: 356 LIEHLSIAVFAVFLITIIFLGLKEALIVGMTIPLILGLTIGGDFLFGPTINRITLYALII 415

Query: 423 GIGLAVDSNILVNERIREENRK---NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +G+ VD+ I+V E I    +K   N     ++         T   +    ++   +   
Sbjct: 416 ALGMLVDAAIVVIENIHRRYQKLEGNDPKTVAILATNEIGNPTNLATVAVMIVFISMALL 475

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
            G      F I    ++ ++M T++ +   ++ + +        + N           I 
Sbjct: 476 TGMPEQYFFPIM--FNVPLAMATSLIVAYIVVPWGVYKWIKPHPEQNGHKDKKKSKFNIQ 533

Query: 540 IQFMR 544
           I F +
Sbjct: 534 IAFKK 538



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 2/144 (1%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+  A+ +   I      AL    T+ L +  T+G   LFG   N   + A++  +G 
Sbjct: 360 LSIAVFAVFLITIIFLGLKEALIVGMTIPLILGLTIGGDFLFGPTINRITLYALIIALGM 419

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+  +VV + + +  +        + +   + NE    +   ++A  I  + MA+  G 
Sbjct: 420 LVDAAIVVIENIHRRYQKLE-GNDPKTVAILATNEIGNPTNLATVAVMIVFISMALLTGM 478

Query: 793 VIGSFAIPMAFGIVVAASSSIFIA 816
               F  P+ F + +A ++S+ +A
Sbjct: 479 PEQYF-FPIMFNVPLAMATSLIVA 501



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 61/145 (42%), Gaps = 11/145 (7%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
             I +     +   L A+ ++ L +        +   +F   ++  +L L    + + +++
Sbjct: 942  FILVAYYKSFSLPLIAMFSIPLGVAGVFPGHLIMQQQFTAASIIGLLALASVVIRNSLLI 1001

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSF 797
             D   +N+K   + +S RD + +S+       + T++A    V  M    V+GG      
Sbjct: 1002 IDFALQNIK---SGMSIRDSVVESVEMRTRPIILTALAVVFGVAVMLTDPVFGG-----L 1053

Query: 798  AIPMAFGIVVAASSSIFIAAPILLF 822
            AI + FG +V+   ++ +   +L  
Sbjct: 1054 AISLIFGTIVSTFMTLIVIPLMLYI 1078


>gi|117921776|ref|YP_870968.1| acriflavin resistance protein [Shewanella sp. ANA-3]
 gi|117614108|gb|ABK49562.1| acriflavin resistance protein [Shewanella sp. ANA-3]
          Length = 1067

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/674 (11%), Positives = 179/674 (26%), Gaps = 45/674 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+    +L   +   GL            +       P   ++L   L     +     
Sbjct: 13  RNSVAANLLMWALLIGGLFS---------TVLINKEVFPSFNLNL---LS--ITVAYPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   + +  +E    +           +    IT+   D    + + D+  L L  
Sbjct: 59  APQEIEEGINIKIEEAIQDINGIKKVTSVASEGVGAITVEVEDDYDVQTVLDEAKLRLDA 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S   V+ +K  +    E E +++      D  +    E +    +   D +    S  
Sbjct: 119 I-STFPVNIEKPQIFKI-EPENNVIWVSVYGDMSLHDMKELA----KSVRDDLTQLPSVT 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++  E    +LR+   T ++++      +    G           DG+  
Sbjct: 173 RAKVTGVRDYEIGIEVSEDKLREYGLTFSQVALAVQNSSIDLPGGSIRAE-----DGDIL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L       +G                    +        R        I       L+  
Sbjct: 228 LRTKGQAYTGDD--------------FANIVVTTRTDGSRVMLPQVATIKDDFEERLEYT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +     +         RA                   G  ++
Sbjct: 274 RFNGKPAAIIEVTSVNDQNALDIAQQVKDYVEKRRATLPANAQLDTWGDLTHYLKGRLNM 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL--LGATLTLPSIAG 419
                   A LV ++L + +   K        + +  + T+ ++ L     T+ + ++  
Sbjct: 334 MMSNMFYGALLVFVILALFL-DLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFA 392

Query: 420 IVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +L +G+ VD  I++ E    E  R   S+   +      A    F    T      +L 
Sbjct: 393 FILVLGIVVDDAIVIGESAYSEVERHGHSIDNVIRGAQKVAMPATFGVLTTIAAFIPMLM 452

Query: 479 FFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   +  +   + + + +  S+  +  I+ A +  +   K  +        +      
Sbjct: 453 VSGPMGIIWKSIGMVVIMCLAFSLVESKFILPAHLAHMKFRKPGEPTGFFGRFKDRFNNH 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R +               +    L+  +   G ++     + P D   V+ 
Sbjct: 513 VQHFIHHSYRNFLERCIQHRYNVVAAFIGVLILSIALVASGKVRWVFFPDIPSDFIQVQL 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       + +     +  L ++  +         V        +        + T+ 
Sbjct: 573 EMDEGSSEQNTLKVVQDIEEALYKMNAKMEKDNGSEVVKHSFINMSSRTSAFIFAELTKG 632

Query: 657 VGPKISRELIRKGI 670
               +  E I    
Sbjct: 633 EDRDVDGETIAAAW 646



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 90/256 (35%), Gaps = 10/256 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +   +   +               S    DG++   +              V E+ +  +
Sbjct: 779  IRTPQGKSVPFSTVAEVEKGESYASITRVDGKRAITIIANANKHKVEPSKVVNEIQQDFL 838

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             ++        T + G  +  +    G++ G   +   +   + +  K  ++   I   +
Sbjct: 839  PQLQAKYPKIQTTLDGGSLDEQNAMVGLMQGFFFALFTIYALMAVPLK-SYSQPLIIMSV 897

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +        F     G+  ++ ++  ++ L G  VND +++ D +    +      S R 
Sbjct: 898  IPFGIIGALFGHLIQGLAMSVLSLCGIVALAGVVVNDSLILVDFVN---RAREQGQSVRQ 954

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                S        + TS+  F+ ++P+ +       ++   A  +AFGI+ +   ++ + 
Sbjct: 955  AAVDSGCYRFRAIILTSLTTFVGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILV 1014

Query: 817  APILLFIYDWRAKNAR 832
              + + + D +  ++R
Sbjct: 1015 PLLYIILDDVKRTSSR 1030



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 91/280 (32%), Gaps = 8/280 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI      I L        G DF   +         V L  V +  +  +      +   
Sbjct: 218 SIRAEDGDILLRTKGQAYTGDDFANIVVTTRTDGSRVMLPQVATIKDDFEERLEYTRFNG 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +        +++   + ++   +K    +P +   +T        +  +   +  
Sbjct: 278 KPAAIIEVTSVNDQNALDIAQQVKDYVEKRRATLPANAQLDTWGDLTHYLKGRLNMMMSN 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
           +   A+ + + + +      A   +  L +    T+    L  F +  N+  + A + ++
Sbjct: 338 MFYGALLVFVILALFLDLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFAFILVL 397

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ +     ++      S  ++I  +    +  +    +    + +PM +  
Sbjct: 398 GIVVDDAIVIGESAYSEVE--RHGHSIDNVIRGAQKVAMPATFG-VLTTIAAFIPMLMVS 454

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G +     S  + +   +  +   S FI    L  +   +
Sbjct: 455 GPMGIIWKSIGMVVIMCLAFSLVESKFILPAHLAHMKFRK 494


>gi|333020822|gb|EGK40082.1| cation efflux system protein cusA [Shigella flexneri K-227]
          Length = 1047

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 173/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPSQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMPFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ-----------SVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +   + Q           + +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEERQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   +++ +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMVGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLQQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVAWVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 95/288 (32%), Gaps = 16/288 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI--LLFIYDWRAKN 830
                 G  V+   A PM  G++ A   S+FI      L++++  R +N
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRN 1047


>gi|224437321|ref|ZP_03658293.1| hypothetical protein HcinC1_05082 [Helicobacter cinaedi CCUG 18818]
 gi|313143777|ref|ZP_07805970.1| acriflavine resistance protein [Helicobacter cinaedi CCUG 18818]
 gi|313128808|gb|EFR46425.1| acriflavine resistance protein [Helicobacter cinaedi CCUG 18818]
          Length = 1022

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 81/668 (12%), Positives = 180/668 (26%), Gaps = 44/668 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++    +L      + +     FP       +                   + V   
Sbjct: 10  ITTLMFAFAILFFGFLGVKKMPTSLFPDIDFPVAV---------VITSYPGASAEIVETK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E    +        S  +  + + + F   +  ++  + V   +  +  +L+  
Sbjct: 61  VTDKIEEAVMGIDGIKKVTSSSARNVSMVIVQFELEKPLDSAVNDVRDKVGSL--QLDSG 118

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            K   +       + IV      D+V   + E            +               
Sbjct: 119 VKTPSINKFDSSSMPIVSIFLTSDKV--SSAELMRHAKDNVKPLLQKISGVGGVEMRGHR 176

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+     PS L +   T   +S    L N    G                   D  ++
Sbjct: 177 ERQIRIFVSPSMLNKYGLTYTDISNKIGLENLEIDGGRLIGTLQEWVITTDAQSTDLSDV 236

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                        A          I   +        L      
Sbjct: 237 GNIRV------------------------AEGIRLGDIATIEDGIEEDKTFASLNKTPGV 272

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  +  +     +    +   + A S   ++    +        + +  +    + 
Sbjct: 273 IFEVQKISGANDIAIADAVMKVLPQIEAISPDYEVRAF-KDTTQNVRSAIASVEFDVLLG 331

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             L + V+F+ +  G   LV+  SI +++  T AL++  G +L + ++  + L IG+ +D
Sbjct: 332 VFLAVFVVFIFLRSGTITLVSAISIPISIFGTFALMNFFGFSLNMLTLLAVALAIGIIID 391

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++         +   G      A   I    ++  I    +    G   +
Sbjct: 392 DAIVVIENIHKKLESGMRKREAAYEGVREIGFALIAISAMLLSVFIPVGSMSGIVGRFFQ 451

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+  +I IS    I+I+  +   ++  K  +           L    +       R
Sbjct: 452 SFGITVAAAIGISYIVVITIIPMVSSIVVNPKYSRFYYRTEPFFKALDGYYVKTLAFVLR 511

Query: 547 F-WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
               V + ++       +L        I      +  V       +S   S ++      
Sbjct: 512 NKIKVIVGVIGVFFLSIMLLAKIGMEFIIPDDKSEFQVFLETKPGIS--MSAMKEKTGIL 569

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                 +    F         +       +    K I +          E+     S EL
Sbjct: 570 QDIVMANENVEFTSLQIGYTNEKNIFKAQIYARLKPIKDRKLSQFEIMAEVGEKLKSSEL 629

Query: 666 IRKGIVGV 673
             + ++ +
Sbjct: 630 ANEFVISL 637



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 64/158 (40%), Gaps = 7/158 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +V V+ + + + + +   ++ +   +  + TL    +       + G  F++ ++  ++ 
Sbjct: 849  LVAVLTAIVLIYLILAALYESFLQPIVIMMTLPFSFSGAFIALFVVGQPFSMFSLMGLMI 908

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G    +  ++ D   +  K      S  + +  +    L   + T++A    ++P+A+
Sbjct: 909  LMGLVGKNATLLIDVANEKRKE---GYSTDEALILAGESRLRPILMTTIAMVFGMIPLAI 965

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                G  +     I +  G++ +   S+ I   +   +
Sbjct: 966  SVGSGAGMKSPMGICIIGGLLFSMFLSLLIVPALYRLL 1003



 Score = 47.4 bits (110), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 78/238 (32%), Gaps = 6/238 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     + L  + +  + ++                   +    + +A    +  V  +I
Sbjct: 239 IRVAEGIRLGDIATIEDGIEEDKTFASLNKTPGVIFEVQKISGANDIAIADAVMKVLPQI 298

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             I P   ++  +     +   +       ++   +A+ +           L +  ++ +
Sbjct: 299 EAISPDYEVRAFKDTTQNVRSAIASVEFDVLLGVFLAVFVVFIFLRSGTITLVSAISIPI 358

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I  T      FG   N+  + AV   IG  ++D +VV + +    K   + +  R+   
Sbjct: 359 SIFGTFALMNFFGFSLNMLTLLAVALAIGIIIDDAIVVIENIH---KKLESGMRKREAAY 415

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAA 817
           + + E     +  S       +P+    G V     SF I +A  I ++    I I  
Sbjct: 416 EGVREIGFALIAISAMLLSVFIPVGSMSGIVGRFFQSFGITVAAAIGISYIVVITIIP 473


>gi|152981203|ref|YP_001351710.1| AcrB/AcrD/AcrF family multidrug efflux protein [Janthinobacterium
           sp. Marseille]
 gi|151281280|gb|ABR89690.1| multidrug efflux pump, AcrB/AcrD/AcrF family [Janthinobacterium sp.
           Marseille]
          Length = 1067

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/633 (10%), Positives = 162/633 (25%), Gaps = 40/633 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  +I       A P  L +   D  P       IS+  +  G S   +  
Sbjct: 8   LRRPYTFLVMALLIFL-----ATPIALTRMATDILPEIDIP-VISIIWNYNGLSAQEMGQ 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                    L    +++                    I + F      +    +VT   Q
Sbjct: 62  RVTAVNERVLTTTVNDIE-------HIESQTLAGVAVIKVFFQPDASIQTAIAQVTSVSQ 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  ++       L++  +   I ++    +   +    +      +     ++      
Sbjct: 115 AILRQMPPGMTPPLIIKYSASSIPVMQLGLSSPTMSEQGLF--DIALNSLRTKLVTIPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +  + D   L+    +   +       N    G          +    
Sbjct: 173 AIPYPYGGKSRVVSVDLDAQALQSKGLSPTDIVNAVNAQNLILPGGTAKFGSTEFTVNIN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  E+                     D+    +     +     ++        + 
Sbjct: 233 GSPRVLDEL--------------------NDLPVRSVNGATTYLGEVAHVRDGFTPQTNI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              S    +++       +                      + S
Sbjct: 273 ARQDGQRGVLLSLLKNGGASTLAIVDSVRASLDDILPTLPDDVKVTALFDQSVFVKAAIS 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I A L   ++ + +   +   +   SI L+V+ ++  L  LG T+ + ++ G+
Sbjct: 333 GVMHEALIAACLTATMILLFLGNWRTTCIIAISIPLSVLSSILALHALGETINIMTLGGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   +  E I         +  ++  G          + +   I  V +FF 
Sbjct: 393 ALAVGILVDDATVTIENIERYLHLGHDLETAILEGAGEIAIPTLVATLCICIVFVPMFFL 452

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK--MKSIDINPLSRFFLIP 535
            G         A  +  +++ S   + ++V  +++  +R       +      S    + 
Sbjct: 453 TGVARYLFVPLAEAVMFAMIASYILSRTLVPTLVMLFMRKSHGAGHTEAKGKPSLLQRVY 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                +F R R   + +                    +       LG      VD  + R
Sbjct: 513 TSFDARFERMRRGYILVLSALLPRRRFYAAVFLGFTVLSSGLYFTLGQDFFPSVDAGLAR 572

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +  +     I       ++   V  +  P + 
Sbjct: 573 LHFRAPTGTRIEETARLADQIEAVIRETIPAEE 605



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 61/151 (40%), Gaps = 7/151 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +G++++ + + + I + F  W   L  IT L   +        L G   ++ A+   +  
Sbjct: 889  IGLLMAIVLVYLLIVVNFQSWIDPLIIITALPAALAGIAWMLFLTGTTLSVPALTGAIMT 948

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + +++    R+ +              ++    L   + T++A  I +LPMA+ 
Sbjct: 949  VGVATANSILMVSFARQRLLA---GEPPLSAALEAGATRLRPVLMTALAMIIGMLPMALG 1005

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
               GG            G++ A +S++F   
Sbjct: 1006 FGEGGEQNAPLGRATIGGLLFATASTLFFVP 1036



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 58/160 (36%), Gaps = 4/160 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +   + +     W        ++ L +  ++      G   N+  +  +   +G
Sbjct: 338 ALIAACLTATMILLFLGNWRTTCIIAISIPLSVLSSILALHALGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + + + + L          I +   E    ++  ++   I  +PM    G
Sbjct: 398 ILVDDATVTIENIERYLHL---GHDLETAILEGAGEIAIPTLVATLCICIVFVPMFFLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                F +P+A  ++ A  +S  ++  ++  +     + +
Sbjct: 455 VARYLF-VPLAEAVMFAMIASYILSRTLVPTLVMLFMRKS 493


>gi|167037436|ref|YP_001665014.1| preprotein translocase subunit SecD [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167040102|ref|YP_001663087.1| preprotein translocase subunit SecD [Thermoanaerobacter sp. X514]
 gi|256752581|ref|ZP_05493435.1| protein-export membrane protein SecD [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300914186|ref|ZP_07131502.1| protein-export membrane protein SecD [Thermoanaerobacter sp. X561]
 gi|307724579|ref|YP_003904330.1| protein-export membrane protein SecD [Thermoanaerobacter sp. X513]
 gi|320115849|ref|YP_004186008.1| protein-export membrane protein SecD [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166854342|gb|ABY92751.1| protein-export membrane protein SecD [Thermoanaerobacter sp. X514]
 gi|166856270|gb|ABY94678.1| protein-export membrane protein SecD [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256748519|gb|EEU61569.1| protein-export membrane protein SecD [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|300889121|gb|EFK84267.1| protein-export membrane protein SecD [Thermoanaerobacter sp. X561]
 gi|307581640|gb|ADN55039.1| protein-export membrane protein SecD [Thermoanaerobacter sp. X513]
 gi|319928940|gb|ADV79625.1| protein-export membrane protein SecD [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 411

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 120/385 (31%), Positives = 222/385 (57%), Gaps = 29/385 (7%)

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           + +       V   AI++++ +I+ R+D +G+++  I + GS+RI ++LPG +DP +  +
Sbjct: 51  VYVLLEAQGDVTQDAIDKAIAVIKNRVDALGVTQPVIAQQGSNRIRVELPGMKDPDKAIE 110

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA++ F                             + +V ++G ++  + A +   
Sbjct: 111 IIGKTAQLKF--------------------------VGPDGQVILTGANVKDSKAVYGQS 144

Query: 265 T---HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +P V +  D  G ++F E T+  I +P+A++LD +V++AP +   I +G A I+G
Sbjct: 145 QTGVQQPEVTLVLDAEGTKKFAEATQKFIEQPIAILLDDKVISAPTVQNVITNGNAVITG 204

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               + A  LA ++RAGSLP+ L  +   +VGA LG  +      A + G++LI+LFM V
Sbjct: 205 LKDFQEASELATLIRAGSLPVTLKPIAYSSVGATLGPSAYNASVKAGIYGVLLILLFMAV 264

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   G++AD ++ + +++ L + +L   TL LP IAG +L IG+AVD+N+L+ ER +EE
Sbjct: 265 FYRLPGVMADIALLIYILIDLIIYALFNITLDLPGIAGFLLSIGMAVDANVLIFERFKEE 324

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
               +S+  +L+ GF+RA+  IFD+N+T +I  ++LF+ G G V+GFA+T+ + ++ S+F
Sbjct: 325 LWAGKSIRAALEAGFARAFRAIFDANMTTIIGAIILFYMGSGNVKGFALTLLIGVISSLF 384

Query: 502 TAISIVRAMMIFIIRYKKMKSIDIN 526
           TAI++ R +++ ++     ++I   
Sbjct: 385 TAITVTRFLLLALVDLDLTRNIKFY 409



 Score =  110 bits (275), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 77/227 (33%), Gaps = 4/227 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                    ++ + D        +           G    Q         +   +     
Sbjct: 169 TQKFIEQPIAILLDDKVISAPTVQNVITNGNAVITGLKDFQEASELATLIRAGSLPVTLK 228

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                 VG  +        +   I   + +L+++ + ++    + A   L++ I   L  
Sbjct: 229 PIAYSSVGATLGPSAYNASVKAGIYGVLLILLFMAVFYRLP-GVMADIALLIYILIDLII 287

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
           +ALF I  +L  +A  L  IG +V+  V++++R ++ +       S R  ++        
Sbjct: 288 YALFNITLDLPGIAGFLLSIGMAVDANVLIFERFKEELWA---GKSIRAALEAGFARAFR 344

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
                +M   I  + +   G   +  FA+ +  G++ +  ++I +  
Sbjct: 345 AIFDANMTTIIGAIILFYMGSGNVKGFALTLLIGVISSLFTAITVTR 391



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 48/144 (33%), Gaps = 5/144 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR+  ++     ++    +       +        P    +  I LGLDLRGG +++LE 
Sbjct: 1   MRSRGFIKFFSVVLIAAIVAYVAFFGINVGNYSISP---VQKHIRLGLDLRGGVYVLLEA 57

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119
              D     +      +++ +   G+    + +Q  N+I +     +  +   + +    
Sbjct: 58  QG-DVTQDAIDKAIAVIKNRVDALGVTQPVIAQQGSNRIRVELPGMKDPDKAIEIIGKTA 116

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEI 143
           Q      +             K +
Sbjct: 117 QLKFVGPDGQVILTGANVKDSKAV 140


>gi|325110175|ref|YP_004271243.1| heavy metal efflux pump, CzcA family [Planctomyces brasiliensis DSM
           5305]
 gi|324970443|gb|ADY61221.1| heavy metal efflux pump, CzcA family [Planctomyces brasiliensis DSM
           5305]
          Length = 1061

 Score =  127 bits (317), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/680 (10%), Positives = 189/680 (27%), Gaps = 43/680 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   ++    ++   G        +    +D FP                   +++  
Sbjct: 10  LQNRLLVIAAAVLLTVWGSW-----QVQTVPIDVFPDLNRPRV------------VIMTE 52

Query: 61  DE---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 + V   +    +   +      +   S     + + + FA      +    V  
Sbjct: 53  APGMAPEEVETLISFPIETAMNGAPGVDVVRSSSGVGISVVYVDFAWGTDIYDDRQVVAE 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ V   L    +  +   ++     ++L     D   +  ++   +       ++   
Sbjct: 113 RLQLVTENLPQGVQPTMAPISSIMGQILML-GMWSDDGSTGPLQLRTQADWIVRQRLLTI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +   Q         Q     +P  L     +  ++       N ++ G            
Sbjct: 172 QGVSQVFVMGGGRKQFQVLINPDSLLHYDVSLDEVKQAVADSNQNETGGYLD-------- 223

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             Q   E  V   G             T +    +S  ++         +          
Sbjct: 224 -RQGPNELLVRALGRVQTVEDLEKVVVTIRDGRPVSLAQVARIVEAPQIKRGDSAAYVRT 282

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                     +     + +                  L+       +             
Sbjct: 283 GPDSFTGGDAVV-LTINKQPGADTRAVTADILKAVNELKPALSDDIIIEPLYSQRAFIDR 341

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +             LV+I+LF+ ++  K   +   +I L+++ T     + G ++   ++
Sbjct: 342 AIENVVEALRDGTILVVIILFLFLMNLKVTFITLTAIPLSIVTTFVCFQIFGFSINTMTL 401

Query: 418 AGIVLGIGLAVDSNILVNERIREENR------KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            G+ + IG  VD  I+  E I    +        ++    +        S+I    +  +
Sbjct: 402 GGLAVAIGELVDDAIVDVENIFRRLKEIRVAANPRNSLRVVYDASLEVRSSIVFGTMIVI 461

Query: 472 IATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK---KMKSIDI 525
           +  + LF      G       +   +SIL S+  ++++   +  +++  +   +  S + 
Sbjct: 462 LVFLPLFGLTGMEGKLFTPLGLAYIVSILSSLVVSLTVTPVLSYWLLAKRKNAQQSSPED 521

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +   FL+     +      F      +  ++  +C+       + +D           
Sbjct: 522 AHVKDGFLLAGLKWVARHVITFSLRFPWLNIAMTLVCVGIAGSYAWNLDRDFLPPFNEGT 581

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +   +    ++L++    + S +    E   ++R   + G +        +   +    
Sbjct: 582 IQLNVVLPPGTSLKTSNEINRSVEQTLRENEDVIRFARRTGRAELDEHAEGVNMSEYLLE 641

Query: 646 VPLSTIQNTEIVGPKISREL 665
           +   + ++ E     I   +
Sbjct: 642 LEPDSPRSREQQLESIREAM 661



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 82/253 (32%), Gaps = 9/253 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              R V+   ++    +  +         G+   L   +    D+ A T  +     ++ 
Sbjct: 261 QVARIVEAPQIKRGDSAAYVRTGPDSFTGGDAVVLTINKQPGADTRAVTADILKAVNELK 320

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLIL 702
             +    I              I   +  +    I ++I +             +T + L
Sbjct: 321 PALSDDIIIEPLYSQRAFIDRAIENVVEALRDGTILVVIILFLFLMNLKVTFITLTAIPL 380

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTTSISFR 758
            I  T   F +FG   N   +  +   IG  V+D +V    ++ R+++         S R
Sbjct: 381 SIVTTFVCFQIFGFSINTMTLGGLAVAIGELVDDAIVDVENIFRRLKEIRVAANPRNSLR 440

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFI 815
            + D S+ E     V+ +M   +  LP+    G     F    +     I+ +   S+ +
Sbjct: 441 VVYDASL-EVRSSIVFGTMIVILVFLPLFGLTGMEGKLFTPLGLAYIVSILSSLVVSLTV 499

Query: 816 AAPILLFIYDWRA 828
              +  ++   R 
Sbjct: 500 TPVLSYWLLAKRK 512



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 83/254 (32%), Gaps = 13/254 (5%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            + +     V LS V    ES     I+      E      +            V+E ++ 
Sbjct: 797  IELPEGGHVPLSAVADIYESGGPNTINR-----ENVRRRVVIQCNVTGRGVVDVVEQMRN 851

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF---KWYFALGAI 697
             +  ++    +        +   +      + ++ S     +++ +         +L  +
Sbjct: 852  DLKPVLSEFPVGYYTEFSGQFESQQSASRRLAILFSLSLFGVFLTLFTLFGSVNLSLQVL 911

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
              L +    ++    + G    + A+   ++L G +  + +++       +K      S 
Sbjct: 912  AALPMAFIGSVVALVVTGQTLTIAAMVGFISLTGIASRNGILLISHYLHLVKYEGADWSH 971

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSI 813
              ++   + E L   + T++ + I +LP+ +     G  ++   A  +  G++ +     
Sbjct: 972  DTIVRAGL-ERLAPVLMTALTSGIGLLPLVLVADEPGKEILYPVATVILGGLISSTLLDF 1030

Query: 814  FIAAPILLFIYDWR 827
             +   +       +
Sbjct: 1031 LVHPALFWLFGRRQ 1044


>gi|255320089|ref|ZP_05361282.1| heavy metal efflux pump, CzcA family [Acinetobacter radioresistens
           SK82]
 gi|262380800|ref|ZP_06073952.1| cation efflux system protein czcA [Acinetobacter radioresistens
           SH164]
 gi|255302845|gb|EET82069.1| heavy metal efflux pump, CzcA family [Acinetobacter radioresistens
           SK82]
 gi|262297542|gb|EEY85459.1| cation efflux system protein czcA [Acinetobacter radioresistens
           SH164]
          Length = 1052

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 163/599 (27%), Gaps = 55/599 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  W+++  +    IG+         +  +D  P      ++ +     G + L +E   
Sbjct: 30  NAIWVMLFIAAWIAIGIYS-----YQKLPIDAVPDIT-NTQVQINTSANGFTALEME--- 80

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S + K        R   +++T+ F D          +   LQ  
Sbjct: 81  -----QRITYPIENAMSGMPKMEQTRSISRYGLSQVTIIFEDGTDIYWARQLINQRLQEA 135

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQIGI 176
             ++  D + N+   +T                         A++           Q+  
Sbjct: 136 MGEMPEDVQPNMSPISTGLGEIYQWVIKAEPNAKKPDGTPYSAMDLREIQDWIVRPQLQR 195

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +               D +RL+QL    + +       N ++          + +
Sbjct: 196 VKGVAEINSIGGFNKTYVVAPDLNRLQQLQIPLSDLQTALTENNENRGAGYIEKNGQQLT 255

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +    +I  I +                                  N+     +
Sbjct: 256 VRVPGTLNTIEDIQNISIA--------------------NKNGYPIRVADVANVSIGHDL 295

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          I       +     +        ++       +            
Sbjct: 296 RTGAATYNGEETVLGIAMMMMGENSRTVAQAIDEKVQSIQQSLPKGVVIETVYDRTHLVD 355

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +    +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  L S
Sbjct: 356 RAIKTVQKNLIEGAILVIVILFLFLGNFRAALITACVIPLSMLFTLTGMAEQKISANLMS 415

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR----------AYSTIFDS 466
           +  +  GI   +D  +++ E       + Q +   L     R          A   +   
Sbjct: 416 LGALDFGII--IDGAVVIVENCIRRLAEAQKLKGGLLSRSERFKEVFLAAKQARRPLIFG 473

Query: 467 NITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +  L+  + +F   G         A+T+ L+++ +M  +++ V A +   +  +  ++ 
Sbjct: 474 QLIILVVYLPIFTLTGVEAKLFHPMAMTVVLALIGAMILSVTFVPAAVALFVTGEVKETE 533

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                         +   +    F  +  + +  +  +    T         +G   + 
Sbjct: 534 SRWMHWLKTKYELLLDKAYELRLFVTIVAACILVLTGVLATQTGSEFAPQLGEGDFAVQ 592


>gi|298375187|ref|ZP_06985144.1| heavy metal efflux pump, CzcA family [Bacteroides sp. 3_1_19]
 gi|298267687|gb|EFI09343.1| heavy metal efflux pump, CzcA family [Bacteroides sp. 3_1_19]
          Length = 1027

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 76/673 (11%), Positives = 199/673 (29%), Gaps = 48/673 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVN 67
           L  ++C + L+I        + +D FP       +           ++ E +    + V 
Sbjct: 14  LVILVCALLLMIWGTYTAFNTDVDVFPDLNAPTVV-----------IMTEANGMAPEEVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   +          S     + + + F            V+  L  +   L 
Sbjct: 63  RLVTFPVETAVNGAMDVRRVRSSSTTGFSVVWVEFDWGTDIYRARQIVSEKLAVLGESLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            +  K  L   +     +++     D      ++           ++  +    Q     
Sbjct: 123 ENVGKPTLGPQSSILGEMMILGLTADST--SLLDLRTIADWTIRPRLLSTGGVAQVAVIG 180

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + +     DP+R++       ++       N +  G +                    
Sbjct: 181 GDIKEYQILLDPARMKHYGVGLNEVLDVCRNMNRNANGGVLY------------------ 222

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           E    ++     +           +           ++    IG     +      T P 
Sbjct: 223 EFDNEYIIRGVLSTSKAEEIAQGVVKTVNEYPVTLGDIATVKIGGKSPKLGTASERTKPA 282

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   +       +   T +   I+  + +   + + ++    R       S +  K +  
Sbjct: 283 VLITVTKQPDTSTEKLTEKLDEIVVDLRKNLPVDVHVSTDIFRQSHFIDNSINNVKKSLF 342

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             +  V+IVLF+ ++  +  +++  ++ L++++++ +L  +G T+   S+ G+ + IG  
Sbjct: 343 EGSFFVVIVLFLFLMNIRTTVISLVALPLSLLVSIIVLHYMGLTINTMSLGGMAIAIGSL 402

Query: 428 VDSNILVNERIREENR--------KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VD  I+  E + +  R        + +S    +          I +S +  +++ V LFF
Sbjct: 403 VDDAIVDVENVYKRIRENRLLPPDQQRSTLEVVYDASREVRMPILNSTLIIVVSFVPLFF 462

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLI 534
                G  +    I   +++  S   A+++   +  +++  K   MK +    ++R   +
Sbjct: 463 LSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLNRKATGMKELREAWIARKLKV 522

Query: 535 PDCIAIQFMRARFWGV--GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
               A++   A    V      LF +  +              +G   + V +   + L 
Sbjct: 523 VYKRALELALAYQKWVLGTTIALFVVALVIFFHLGRSFLPPFNEGSFTINVSSLPGISLD 582

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                    +   +             R +            +E   +            
Sbjct: 583 ESDQIGRRAEALLLQVPEIKTVARKTGRAELDEHALGVNVSEIEAPFELQDRSRDEVMND 642

Query: 653 NTEIVGPKISREL 665
             + +       +
Sbjct: 643 VRKKLSTISGANI 655



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 73/220 (33%), Gaps = 9/220 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-I 675
             V  Q          ++ E+V      +     +              I      +   
Sbjct: 285 ITVTKQPDTSTEKLTEKLDEIVVDLRKNLPVDVHVSTDIFRQSHFIDNSINNVKKSLFEG 344

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S   +++           + ++  L L +  ++      G+  N  ++  +   IG  V+
Sbjct: 345 SFFVVIVLFLFLMNIRTTVISLVALPLSLLVSIIVLHYMGLTINTMSLGGMAIAIGSLVD 404

Query: 736 DKVV----VYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           D +V    VY R+R+N  L      S  +++  +  E     + +++   +S +P+    
Sbjct: 405 DAIVDVENVYKRIRENRLLPPDQQRSTLEVVYDASREVRMPILNSTLIIVVSFVPLFFLS 464

Query: 791 GS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G    ++    I     +  +   ++ +   +  ++ + +
Sbjct: 465 GMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLNRK 504



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 60/138 (43%), Gaps = 10/138 (7%)

Query: 697  ITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  L L +    G     L   E ++ A+   ++L G +  + +++         L    
Sbjct: 893  VILLNLPLALIGGVIILWLTSGEISIPAIIGFISLFGIATRNGMLLISHY---THLRGEG 949

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAAS 810
            +  R+ + +   + L   + T++++ ++++P+A+     G+ I S  A  +  G++ +  
Sbjct: 950  MGLRESVIQGSLDRLNPILMTALSSALALIPLALNGDLPGNEIQSPMATVILGGLLTSTF 1009

Query: 811  SSIFIAAPILLFIYDWRA 828
             + FI  PI+  I +   
Sbjct: 1010 LNGFII-PIVYLIMNKNK 1026


>gi|254293064|ref|YP_003059087.1| heavy metal efflux pump, CzcA family [Hirschia baltica ATCC 49814]
 gi|254041595|gb|ACT58390.1| heavy metal efflux pump, CzcA family [Hirschia baltica ATCC 49814]
          Length = 1069

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 80/608 (13%), Positives = 177/608 (29%), Gaps = 39/608 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L  +     L I+    L  + LD  P       I                     V   
Sbjct: 31  LIVLTLAAALAISGWFALDNTPLDAVPDLTDTQVI---------IRTDFPGQSPQIVEDL 81

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          L K      +     + + + F D         +V   L  + S+L   
Sbjct: 82  VTYPLSTNMLGLPKTKDVRGASMFGTSFVYVIFEDDVDLYWARSRVVEALSRLGSELPPG 141

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               +    T                 +   +           ++   E   +       
Sbjct: 142 AVPQIGPDATGVGWVYQY-ALIDKTGGTDLAQLRSLQDWFLKLELAGVEGVSEVASVGGF 200

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + +     DP+RLR       ++S    + ++   G +           +   V+ K ++
Sbjct: 201 VREYQVLIDPNRLRAYNVPLRRISEAVKVASSEVGGRVLEQGENEFIIRSSGYVDSKDDL 260

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             + +                       G           I  P        +       
Sbjct: 261 DNVVIYA-------------------RDGTPVLLSDIARIIAGPALRRGIVELNGEGETV 301

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   +   +    IE      A L+ G       +          G+    +      
Sbjct: 302 AGIVIMRDGENALQVIERVKAKLADLQRGLPVGVEIVTVYDRAPLIEGAVKYLEHKLIEE 361

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
              V +V+F+ +L+ +   VA  ++ L V+    ++S  G T  + S+ GI + IG  VD
Sbjct: 362 GIAVALVIFIFLLHVRSSFVAIITLPLGVLGAFLIMSFQGVTANIMSLGGIAIAIGAMVD 421

Query: 430 SNILVNERIREENRKNQSVFCS------LDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           ++I++ E    +  +      +      +          IF S +   ++ + +F   G 
Sbjct: 422 ASIVLVENASRKLSELDEKPSAKLHRQTVIAAAQEVGPGIFFSLLIITVSFLPVFALSGE 481

Query: 484 AVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           + R     A T   ++  +   ++++V  +M++++R +  +  +    + F  I   I  
Sbjct: 482 SFRLFSPLAFTKTYAMAFAAILSVTLVPILMLYLMRGRMRREQENPVNAFFVWIYKPIIH 541

Query: 541 QFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             +R ++  V ++I  +   I  +           ++G +         V  + +R  L 
Sbjct: 542 AALRFKWITVALAITLTASVIVPIQRLGSEFMPALYEGELLYMPTTLPGVSSTKMREILG 601

Query: 600 SLQIGDIS 607
                 ++
Sbjct: 602 QTNRIMMT 609



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 57/161 (35%), Gaps = 6/161 (3%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
                L+          +  AI TL L +       +  G+  N+ ++  +   IG  V+
Sbjct: 362 GIAVALVIFIFLLHVRSSFVAIITLPLGVLGAFLIMSFQGVTANIMSLGGIAIAIGAMVD 421

Query: 736 DKVVVY---DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             +V+     R    +    ++   R  +  +  E      ++ +   +S LP+    G 
Sbjct: 422 ASIVLVENASRKLSELDEKPSAKLHRQTVIAAAQEVGPGIFFSLLIITVSFLPVFALSGE 481

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               F   A    + +  AA  S+ +   ++L++   R + 
Sbjct: 482 SFRLFSPLAFTKTYAMAFAAILSVTLVPILMLYLMRGRMRR 522



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 71/257 (27%), Gaps = 16/257 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   A   + L  + +   +     I  +N        V +  +            + +
Sbjct: 798  LVPTPAGAHIPLGELANISFTEGPPMIRSENARLTGWVFVDIVGRDIGGYVAEAQRTVAE 857

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                                +    L       + +  + ++++     +      AI  
Sbjct: 858  NVDLPSGYAVAFSGQYEQMQQAGERLRIAIPAAIALIFLLLMLHFGRLDR-----TAIIM 912

Query: 700  LILDITKTLGFFA--LFGIEFNLTAVAAVLTLIGYSVNDKVVVY----DRMRKNMKLYTT 753
            L L      G +A  L G   ++      + L G +V   VV+      ++R+       
Sbjct: 913  LSLPFGLIGGLWAVWLAGYNLSVAVAVGFIALGGIAVETAVVMLLYIDAQVRE--TQPKN 970

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
                 D +       +   + T    F  + P+ V    G  V+   A+PM  G+     
Sbjct: 971  RAELFDAVSAGAAMRVRPKLMTVTTIFAGLAPIFVTDGLGSDVMRRIALPMLGGMTSTLL 1030

Query: 811  SSIFIAAPILLFIYDWR 827
             ++ +   +        
Sbjct: 1031 LTLIVIPAVYYIWVGRN 1047


>gi|182439138|ref|YP_001826857.1| putative integral membrane efflux protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|178467654|dbj|BAG22174.1| putative integral membrane efflux protein [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 1051

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/517 (11%), Positives = 153/517 (29%), Gaps = 30/517 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  +I  + L+      +PQ      P+        L            +  
Sbjct: 6   RFSLAQRALIGLISIVALVFGA-IAIPQLKQQLLPTIELPMVSVLAP---------YQGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF-KENIADKVTLFLQ 120
             D V   +    +     +        +  +    I  +F       + +   +   + 
Sbjct: 56  SPDVVEKQVVEPLENSLKAVDGVEGITSTASEGNALIMATFDFGDEGTKQLVADIQQAVN 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L       ++  +T+   ++VL+  +           + ++ R  +  +   E  
Sbjct: 116 RARAQLPDGVDPQVVAGSTDDIPTVVLAVTSDKDQQV----LADQLDRTVVPALQDIEGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q        +Q+    D  +L         ++               G   +     ++
Sbjct: 172 GQVTVDGVRDLQVSVVPDDKKLAGAGLDAGTLAQALQA----------GGATVPAGAFSE 221

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                 +++ G + +      +             +             + +  +  +  
Sbjct: 222 SGKSRTIQVGGAYTSLQQI--EDLPVVAKNPAGAGDRPGEPVRLGDVAEVKQEPSTAVSI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      + +     S     +        LR          V      A   S S
Sbjct: 280 TRTNGRPSLAVMATMDKDGSAVAISDAVKDKLPDLRKDLGEGAELTVVSDQGPAVSKSIS 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A+     ++V+ + +   +  LV   SI L+++L L +L     +L + ++  +
Sbjct: 340 GLTTEGALGLVFAVVVILVFLASIRSTLVTAVSIPLSIVLALIVLWTRDLSLNMLTLGAL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD +I+V E I+      +    ++          +  + +T +   + +   
Sbjct: 400 TIAIGRVVDDSIVVLENIKRHLGYGEERHAAIINAVKEVAGAVTSATLTTVAVFLPIGLV 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG        F++T+  ++L S+  ++++V  +  + 
Sbjct: 460 GGMVGQLFGSFSLTITAALLASLLVSLTVVPVLSYWF 496



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 10/179 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE---LIRKGIVGVIISAIAMLIYIW 685
                V + +     ++   + +      GP +S+    L  +G +G++ + + +L+++ 
Sbjct: 302 AISDAVKDKLPDLRKDLGEGAELTVVSDQGPAVSKSISGLTTEGALGLVFAVVVILVFLA 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L    ++ L I   L       +  N+  + A+   IG  V+D +VV + ++
Sbjct: 362 ---SIRSTLVTAVSIPLSIVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAF 803
              +           I  ++ E  G     ++      LP+ + GG V   F    +  
Sbjct: 419 ---RHLGYGEERHAAIINAVKEVAGAVTSATLTTVAVFLPIGLVGGMVGQLFGSFSLTI 474



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 8/199 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                              V   + KKI  +        T     +   E   +  + ++
Sbjct: 803 DGQRSATITAKPVGDNTGAVSTDLAKKIDALDLPDGATATIGGVTEDQNEAFAQLGLAML 862

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +   F+     L  + ++    T  L    + G    + A+  +L LIG  
Sbjct: 863 AAIAIVFMLLVATFRSLVQPLILLVSVPFAATGALALLLITGTPLGVPAMIGMLMLIGIV 922

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
           V + +V+ D + +        +   + + +         + T++A   ++LPMA+     
Sbjct: 923 VTNAIVLIDLINQYRAQ---GLGIVEAVIEGGRHRFRPILMTALATIFALLPMALGVTGE 979

Query: 790 GGSVIGSFAIPMAFGIVVA 808
           GG +     + +  G++ +
Sbjct: 980 GGFISQPLGVVVIGGLISS 998


>gi|24373487|ref|NP_717530.1| AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
 gi|24347784|gb|AAN54974.1|AE015635_8 AcrB/AcrD/AcrF family protein [Shewanella oneidensis MR-1]
          Length = 1020

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 78/674 (11%), Positives = 205/674 (30%), Gaps = 51/674 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  I   GL  +         L+ FP       +           +  +  
Sbjct: 9   KLPVTTSMFFFAILLFGLASS-----RLLPLEMFPGIDIPQIV---------VQVPYKGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + +           Q   +I ++          + +    +  
Sbjct: 55  TPAEVERDITKVLEESLATMGGIDELESESSQEGAEIEINMKWGENVATKSLEAREKIDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++  +   +  ++ ++  + + D+ +S A +      +Q    +   E   
Sbjct: 115 VRHLLPRDVERVFIRQFSTADMPVLTIRISSDRELSGAFDLLD---KQLKRPLERVEGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         Q+    + +RL     +  ++       N            L      + 
Sbjct: 172 KVSLYGVEQKQIEVRINANRLAASGFSATELQARLARENFVLSAGTLRESNLVYQVSPKG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  +I  + L       D    +  +    +     + + V  D   +  A +++  
Sbjct: 232 EFRNLEDIKALVLVPGLTLGDVADVQFSLPERSEGRHLDQHYAVGLDVFKESGANLVEVS 291

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                VI QA    + Q    F +E                               S + 
Sbjct: 292 DRVLKVIEQAKQDQQFQGIRLFIME-----------------------DQASGVKSSLTD 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  + A L  I+L++ +   K  ++   S+ +++ +TLA + LLG +L + S+ G++
Sbjct: 329 LLLSGLVGALLSFIILYLFLRNFKMTMIVVSSVPISIGMTLAAMYLLGYSLNILSMMGLL 388

Query: 422 LGIGLAVDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           L +G+ +D+ ++V E + +E + N      Q    ++  G  +    +    +T  I  +
Sbjct: 389 LAVGMLIDNAVVVTESVLQEKQGNSVNSNPQDNENAVMTGVDKVSLAVLAGTLTTAIVFL 448

Query: 476 VLFF----FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
              F         +   AI + +S+  S+  A +++  M+       +  +      + +
Sbjct: 449 PNIFGVKVQLTIFLEHVAIAICISLAASLLVAKTLIPLMLTKFHFDIEPDNTTGKLQNFY 508

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
               + + I+  R+    +   +  +   I ++     +     +  I   V     +++
Sbjct: 509 NRSLNWVLIRPWRSGLISIA-ILASTALPISMVKQDQEDSQSKERIYINYQVEGRHNLNV 567

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           +    N     +     Q                   + +  +   + +   +I      
Sbjct: 568 TEAMVNQMEDYLYKNKEQFHIDTVYSYYAPDDASSVILLKKDLPMPLDELKQKIRSGFPK 627

Query: 652 QNTEIVGPKISREL 665
            +          + 
Sbjct: 628 YSIAKPQFGWGDDN 641



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 81/222 (36%), Gaps = 10/222 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                       D++        +K+ +  +        +   G +   E     ++ ++
Sbjct: 781 NRQTSLSIGANLDNLTTEEAQTKIKQVMENVSFPDGYNYSLRGGFERQEEDQSIMVINML 840

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           ++   + I +   F+        IT+++  IT       L G   ++ A+  +L L+G  
Sbjct: 841 LAIAMIYIVMAALFESLLLPTAIITSILFSITGVFWALLLTGTPMSVMAMIGILILMGVV 900

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV----- 788
           VN+ +V+ D++ +            D I +     L   + T     + ++P+A+     
Sbjct: 901 VNNGIVLVDQINQMTPELDK---LSDTIREVCITRLRPVLMTVGTTVLGLVPLAMDDTQI 957

Query: 789 -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GG      AI +  G+  +  +S+++       +Y  R +
Sbjct: 958 GGGGPPYYPMAIAIIGGLSFSTLTSLYLVPLCYQLLYRMRYR 999



 Score = 71.3 bits (172), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 85/203 (41%), Gaps = 5/203 (2%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            V+   +  + + K  +      +   E     +   L    + G++ + ++ +I     
Sbjct: 289 EVSDRVLKVIEQAKQDQQFQGIRLFIMEDQASGVKSSLTDLLLSGLVGALLSFIILYLFL 348

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +   +  ++++ + I  TL    L G   N+ ++  +L  +G  +++ VVV + + + 
Sbjct: 349 RNFKMTMIVVSSVPISIGMTLAAMYLLGYSLNILSMMGLLLAVGMLIDNAVVVTESVLQE 408

Query: 748 MKLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-IGSFAIPMAF 803
            +  + + + +D    +   +++     +  ++   I  LP  ++G  V +  F   +A 
Sbjct: 409 KQGNSVNSNPQDNENAVMTGVDKVSLAVLAGTLTTAIVFLP-NIFGVKVQLTIFLEHVAI 467

Query: 804 GIVVAASSSIFIAAPILLFIYDW 826
            I ++ ++S+ +A  ++  +   
Sbjct: 468 AICISLAASLLVAKTLIPLMLTK 490


>gi|148359918|ref|YP_001251125.1| cobalt/zinc/cadmium efflux RND transporter permease HelA
           [Legionella pneumophila str. Corby]
 gi|148281691|gb|ABQ55779.1| cobalt/zinc/cadmium efflux RND transporter, permease protein HelA
           [Legionella pneumophila str. Corby]
          Length = 1049

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/600 (12%), Positives = 162/600 (27%), Gaps = 57/600 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +++  ++++   +I  +G+         +  +D  P                   +  + 
Sbjct: 10  LKHRWFVLLFTFIIAVLGVY-----NFQRLPIDAVPDITNVQ-----------VQINTQA 53

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  V   +    +   S L          R   +++T+ F D          +   
Sbjct: 54  SGYSPFEVEQRITFPIELAMSGLPNLDYTRSLSRYGLSQVTVVFKDGTNIYFARQLINER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH----AIEQSMEIIRQRIDQI 174
           LQ V  KL  + +  L   +T      + +  N   +        +E           Q+
Sbjct: 114 LQEVKDKLPPEAETTLGPISTGLGEIFMYTVTNKSNLPKSQRYNPMELRTIQDWIIKPQL 173

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
              E   +         Q     DP++L +   +   +       N++           +
Sbjct: 174 RNVEGVAEVNTIGGYEKQFHITPDPTKLVRYGLSLNNVVEALERNNSNVGAGYIERNGEQ 233

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           +       V++  +I  I +                                   +    
Sbjct: 234 NLIRVPGQVKNIADIENIVVANFE--------------------GTPVRIRDVAEVALGK 273

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          +        
Sbjct: 274 ELRTGAATENGDEVVLGTVFMLMGENSRTVSQRVAAKMKEINKSLPEGVEAVTVYNRTLL 333

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV ++LF+ +   +  L+    I L+++LT+  +     +  L
Sbjct: 334 VNATINTVKKNLLEGALLVCVILFLFLGNVRAALITAMVIPLSMLLTITGMVTNQISANL 393

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYSTI 463
            S+    L  GL VD  +++ E   +   + Q     +     R              +I
Sbjct: 394 MSLGA--LDFGLIVDGAVIIVENCIKHLGEQQHALQRILNLEERLKTIAYATTEVIRPSI 451

Query: 464 FDSNITALIATVVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           F   I  ++   +L   G         A T+ +++L SM  A++ V A +   +R    +
Sbjct: 452 FGVFIITVVYLPILTLTGVEGKMFLPMAETVIIALLASMLFALTFVPAAVAIFLRGHIQE 511

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +   F   R       +L  I  +      G       +G I +
Sbjct: 512 KENRLVHFLSIGYAKVLRRCFHARRQVIGAAVVLVIISFMLAFRLGGEFIPSLDEGDIAM 571



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 90/249 (36%), Gaps = 12/249 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             + LS V   + S     IS +           ++ +   S        + +K       
Sbjct: 801  FIPLSEVAKMVRSESPNQISREVGKRRVVVTANVRNRDLSSFVNEAKQRIEQKVKVPSGY 860

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              T           S+ L     + V I+ + + + +++ F        + + I  +  T
Sbjct: 861  WITWGGQFEQLQSASQRLQ----IVVPITLLGIFLLLFMSFGNARNALLVFSGI-PLALT 915

Query: 708  LGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             G FAL+  GI  +++A    + L G +V + +V+   +  N          +D + +  
Sbjct: 916  GGVFALWLRGIPLSISAGVGFIALSGVAVLNGLVMITFI--NKLREQKKYYLKDAVLQGS 973

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   +   
Sbjct: 974  LARLRPVLMTALVASLGFVPMALATGTGSEVQRPLATVVIGGIISSTFLTLLVLPGLYYI 1033

Query: 823  IYDWRAKNA 831
             ++ R K  
Sbjct: 1034 FHERRKKQG 1042


>gi|257125109|ref|YP_003163223.1| acriflavin resistance protein [Leptotrichia buccalis C-1013-b]
 gi|257049048|gb|ACV38232.1| acriflavin resistance protein [Leptotrichia buccalis C-1013-b]
          Length = 1018

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/669 (10%), Positives = 180/669 (26%), Gaps = 35/669 (5%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             ++ + +  + ++ +    +     +  P       +                   + V
Sbjct: 9   KRVVSTTMILLFMIFSGFMTMRSMKKELIPDFKFPMVV---------ISTSWTGAASEDV 59

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    ++    +        S     + + + F      +    ++   +  +   L
Sbjct: 60  KTQISKKIEDAALNVDGIKNISTSSTYGNSNVIVEFNFGTDTDIKQVQIQSEIDKIKRDL 119

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             D    ++        +  ++     +    A   +  I      ++  +         
Sbjct: 120 PSDANDPVVSKMNMAGGNSDMALMVAIRGGDEAT-ITSFIEETLKPRLKRNRGVGDISVF 178

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                Q+  + DP RL+    + +++       N    G                 ++  
Sbjct: 179 GNATRQIKVKLDPYRLQAYNLSPSEIYAKIQAANTIVPGGTVKDGSKEFILKVDGELKTL 238

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +I  I ++                        +         +                
Sbjct: 239 EQIQNIIIS--------------------NKDNQVVRLNDVATVEYGTKDKTSYSKYDGQ 278

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   +       +       A      ++          +   N      + S    T 
Sbjct: 279 DMISVMIQKSKDGNLVEIASIARKALEEMKPLFPSGTSYEIITDNSIRVKEAISNVTSTG 338

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                + +IVL + +   +  LV   SI ++ + T  LL   G TL + S+ G+ L IG 
Sbjct: 339 LQALVITIIVLLVFLKDLRAALVVGMSIPISAMFTFFLLGTQGITLNMISLMGLALAIGS 398

Query: 427 AVDSNILVNERIREENRKN--QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            VD+ ++  + I +  + N   ++  ++          I  +  +  +   ++ F G   
Sbjct: 399 LVDNAVVTLDNIFDHIQLNKEPAMVAAIRGTNEVILPMIASTATSVCVFLPIVLFPGFAK 458

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
                I+  +   +S    ++++   M   I     K       +  F        + ++
Sbjct: 459 EVFSGISFSMMFALSTSIVVAMLFIPMASSIFLNIEKISGAAGKAHRFNAFRDKYKELVK 518

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                +    +  I    L        G   K      +  N    ++ + + L+     
Sbjct: 519 K---ALENRKVVIIGIAVLFVVVVFGLGKTVKSAFFPTIDNNEYSVVASLSTGLDVEVAH 575

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           +IS Q     K   V   Y    +     V   VKK   + +     + + I    I+  
Sbjct: 576 EISKQMEQIVKEDPVTKNYTTIVNAQAAIVNVDVKKDTMKAMERVRQKMSNIPNVTIAVS 635

Query: 665 LIRKGIVGV 673
             + G   V
Sbjct: 636 PQKAGGRAV 644



 Score = 89.8 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 30/223 (13%), Positives = 82/223 (36%), Gaps = 7/223 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                +V +      S         V     +  P +  +       +  +E+  + +  +
Sbjct: 784  NGAQIVTVGANMDKSKGLNDAASFVNASFQKTNPAAGYKIAPAGNAQSQKEMGGEIMNAL 843

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             +S + + I + ++ + +   L  +  L L +   +   A+  I+ ++  +  +L L G 
Sbjct: 844  ALSIVLIYIVLAVQLESFVLPLIMMLALPLSMIGVIFGLAVTRIQLSMFVMIGILMLFGM 903

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            +VN+ +V+ D +     L    +  R+ + ++    L   + T++   +  +PM      
Sbjct: 904  AVNNAIVLLDFV---SGLRQKGMEIREALVEAAGSRLRPILMTTLTTVLGWIPMVFSSKG 960

Query: 793  V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                    A+ + FG+      ++F        + + + K  +
Sbjct: 961  SSGYYQGMAVAVMFGLSFCTLLTLFFIPVAYSIVEERKEKRQK 1003



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/195 (19%), Positives = 75/195 (38%), Gaps = 17/195 (8%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           + LE +K           I +  I   +    +   G+  ++I+ I +L+++        
Sbjct: 302 KALEEMKPLFPSGTSYEIITDNSIRVKEAISNVTSTGLQALVITIIVLLVFL---KDLRA 358

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           AL    ++ +    T       GI  N+ ++  +   IG  V++ VV  D +  +++L  
Sbjct: 359 ALVVGMSIPISAMFTFFLLGTQGITLNMISLMGLALAIGSLVDNAVVTLDNIFDHIQL-- 416

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFG----I 805
                     +  NE +   + ++  +    LP+ ++ G    V    +  M F     I
Sbjct: 417 NKEPAMVAAIRGTNEVILPMIASTATSVCVFLPIVLFPGFAKEVFSGISFSMMFALSTSI 476

Query: 806 VVAAS-----SSIFI 815
           VVA       SSIF+
Sbjct: 477 VVAMLFIPMASSIFL 491


>gi|94501873|ref|ZP_01308384.1| Cation/multidrug efflux pump [Oceanobacter sp. RED65]
 gi|94426006|gb|EAT11003.1| Cation/multidrug efflux pump [Oceanobacter sp. RED65]
          Length = 1028

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/514 (11%), Positives = 156/514 (30%), Gaps = 41/514 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN+ +  +L  +   +G++               P         L         +V   
Sbjct: 8   LRNHQFTWLLAIIFVLLGVVA-----YLTMPRAEDPQFDFPAVSVL---------VVNPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    +E  + L+       ++     ++ + F      +   D V   + 
Sbjct: 54  TTPKDMESLVVDPIEESINELEDIKFIKTNIEDGLARMQVEFLYGSDPDEKYDDVVTAIN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L     K      +  E+ I+    +        + +  E +   ++++G     
Sbjct: 114 NVRDELPSSIAKLETKKISPSEVGILQYALSSRSSDYVELRRYGERLENALERLG---GV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +        +++    +P  +  L  + +++                        +   
Sbjct: 171 KRVDLDAMADLEVQVSVNPGTMHALGLSLSQVKQAV--------------------ESAS 210

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y +      +G        + D  + + +  +    +  +  +     +I     +    
Sbjct: 211 YNIPGGHVHAGDRRFSVLTSGDFSSVEQLERVLIASVNGKNIYLDNIASIQLTDGLPSYR 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    +E+     A             +      +     +
Sbjct: 271 GYYQGETAVFLNVIQRQGTNIFNVVESIKGYVAEYETTLPNDLTLSLVNDQSTSVETRVN 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
            +         LV      ++      +V   +I +++ + +  L   G  L   SI G+
Sbjct: 331 GFFSNLIQGLVLVAAACLWVL-GRGPSVVVVLAIPISIFIAIGWLDFTGYALQQMSIVGL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           V+ +GL VD+ I+V E I    R   S   +  +G  +    I    +T +++ V +   
Sbjct: 390 VIALGLLVDNAIVVVENILRLKRDGYSAQQASALGSDQVSMAIASGTLTTILSFVPMLLM 449

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
               G  +R   +T+ L++L S+  A+++   +M
Sbjct: 450 QNGSGTFIRSMPVTVVLTLLASLLVALTLTPLIM 483



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/215 (11%), Positives = 74/215 (34%), Gaps = 7/215 (3%)

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
            + GE    + +  + G ++              E    + +  + +     S E    G
Sbjct: 272 YYQGETAVFLNVIQRQGTNIFNVVESIKGYVAEYETTLPNDLTLSLVNDQSTSVETRVNG 331

Query: 670 IVGVII-SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
               +I   + +            ++  +  + + I   +G+    G      ++  ++ 
Sbjct: 332 FFSNLIQGLVLVAAACLWVLGRGPSVVVVLAIPISIFIAIGWLDFTGYALQQMSIVGLVI 391

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  V++ +VV + +   ++L     S +       ++        ++   +S +PM +
Sbjct: 392 ALGLLVDNAIVVVENI---LRLKRDGYSAQQASALGSDQVSMAIASGTLTTILSFVPMLL 448

Query: 789 W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                G+ I S  + +   ++ +   ++ +   I+
Sbjct: 449 MQNGSGTFIRSMPVTVVLTLLASLLVALTLTPLIM 483



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 97/239 (40%), Gaps = 7/239 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              + +LQ+     +        + R+            + + V +++ E+   S +  + 
Sbjct: 785  KQIANLQMQSGMARFQHHNTRRMARVTSDVKSGFNTAALTQEVLQQVGELNLPSGVSISV 844

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +   E        +II+ + +   + I+F+ +     + T I     T  FFALF 
Sbjct: 845  GGEQENREESFGGMAKALIIALLGIFAVLVIQFRSFMQPLIVFTAI-PFAATGAFFALFL 903

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G  F+ TA   + +L+G  VN+ +++ D   +         +  D I KS    +   +
Sbjct: 904  TGYTFSFTAFVGLTSLVGIVVNNAIILVDYANQEQA---NGANIHDAILKSAQTRMTPIL 960

Query: 774  YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             T++     +LP+ + G S+       +  G+VV+   ++F+  P+L  ++  + K  +
Sbjct: 961  LTTLTTIGGLLPLTLSGSSMWSPMGWAIIGGLVVSTLLTLFVV-PVLYTLFTPKNKQVK 1018


>gi|320161078|ref|YP_004174302.1| protein-export membrane protein SecD [Anaerolinea thermophila
           UNI-1]
 gi|319994931|dbj|BAJ63702.1| protein-export membrane protein SecD [Anaerolinea thermophila
           UNI-1]
          Length = 464

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 134/403 (33%), Positives = 213/403 (52%), Gaps = 27/403 (6%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
               +   A+E +  I+  R + +G+SE+  Q  G  RI+ + PG  DP ++  ++  T 
Sbjct: 60  AETPIDPQALEDARTILENRTNALGVSENLFQVAGERRIVAEFPGLSDPEKVLAVIKETG 119

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK---------------------VEI 249
            + F  V   ++ +    G   L D        +                         +
Sbjct: 120 LLEF--VDLQDNPENLQEGNLILTDFGQTSTSTQPTETTTAPATEGQESLASTTVYHTIM 177

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           +G  L     + +P T + V+D +  + GA+ F E T +NIGK LA+VLD ++++AP + 
Sbjct: 178 TGKDLKSVVVSRNPNTGEVVIDFTLSDEGAKIFDEYTSNNIGKILAIVLDKKIISAPRVQ 237

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             IPSG+ QI+GNFT+ETA  LA  +R G+LPI   +VE R +G  LG DS+ K   A  
Sbjct: 238 GRIPSGQGQITGNFTLETANNLAIQMRYGALPIPFKVVESRVIGPTLGRDSLQKSLLAGY 297

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
            G  +++LFM + Y   G++AD S+ +  ++TL L   +  TLTLP IAG +L  G A+D
Sbjct: 298 IGFTIVILFMGIYYRLPGVMADLSLIVYALITLTLFRFIPVTLTLPGIAGFLLSTGSALD 357

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA----V 485
           +NIL+ ER++EE R  ++   +LD+ + RA  +I DSNI  LI  V+LF FG       V
Sbjct: 358 ANILIFERLKEELRAGRTFSQALDLAWKRALPSIRDSNIATLITVVILFIFGSQFGATIV 417

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           +GFA T+G+ I +S+F A+ + R  M  ++   K ++  +   
Sbjct: 418 KGFAFTLGVGIFVSLFCAMVVTRTFMYILVDRMKPQAKHLKWF 460



 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 95/212 (44%), Gaps = 8/212 (3%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
            G+   +T     ++ +   +     +  + ++GP + R+ ++K ++   I    +++++
Sbjct: 248 TGNFTLETANNLAIQMRYGALPIPFKVVESRVIGPTLGRDSLQKSLLAGYIGFTIVILFM 307

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            I ++    + A  +LI+    TL  F    +   L  +A  L   G +++  +++++R+
Sbjct: 308 GIYYRLP-GVMADLSLIVYALITLTLFRFIPVTLTLPGIAGFLLSTGSALDANILIFERL 366

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS----VIGSFAIP 800
           ++ ++      +F   +D +    L     +++A  I+V+ + ++G      ++  FA  
Sbjct: 367 KEELRA---GRTFSQALDLAWKRALPSIRDSNIATLITVVILFIFGSQFGATIVKGFAFT 423

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +  GI V+   ++ +    +  + D     A+
Sbjct: 424 LGVGIFVSLFCAMVVTRTFMYILVDRMKPQAK 455



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 20/136 (14%), Positives = 43/136 (31%), Gaps = 8/136 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+   + + L  ++  + +   +P         +  +      +  GLDL+GG  ++LE 
Sbjct: 1   MKRYYFTLALIVLLLGLTIWFNVPGH----PQIKIGNFERSMDLIQGLDLQGGVQVLLEA 56

Query: 61  DED---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVT 116
           D           L+     L +     G+     +     +I   F      E +   + 
Sbjct: 57  DLPAETPIDPQALEDARTILENRTNALGVSENLFQVAGERRIVAEFPGLSDPEKVLAVIK 116

Query: 117 LFLQGVNSKLNVDPKK 132
                    L  +P+ 
Sbjct: 117 ETGLLEFVDLQDNPEN 132


>gi|307730117|ref|YP_003907341.1| acriflavin resistance protein [Burkholderia sp. CCGE1003]
 gi|307584652|gb|ADN58050.1| acriflavin resistance protein [Burkholderia sp. CCGE1003]
          Length = 1063

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 74/638 (11%), Positives = 169/638 (26%), Gaps = 45/638 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     +++  ++  +G     P  + ++  D FP+                  +V   
Sbjct: 8   LRRPYTFIVMAVLLFILG-----PLAIMRTPTDIFPNIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D  +     Y   L + +              + + + F           +   
Sbjct: 52  NGFSAEDMAHRITSNYERALTTDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + ++    + D +     +           Q+   
Sbjct: 112 NSASILRILPPGTLPPNIITYNASTVPVLQLGLSSDTLPEQ--KLYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  E DP  L+        +                         
Sbjct: 170 QGAAVPLPFGGKIRQIMVELDPKALQAKGLAPIDVVNAVNAQ------------------ 211

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               ++       G        N   +T   + D+    +     +     ++    A  
Sbjct: 212 --NLILPGGTAKIGSREYNVEMNGSTQTVAALNDLPIKTVQGGVVYVRDVAHVIDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    I+    +   + AG       I           
Sbjct: 270 TNIVRSDGKRAALLQVEKTGSASTLTIIQQVKDMLPKIAAGLPKALHIIPLSDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S       I A L   ++ + +   +  L+   +I L V+ +L  L+ LG T+ + ++
Sbjct: 330 AISGVVREALIAACLTAAMILLFLGSWRATLIIAVTIPLAVLTSLIALAALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     K + +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLEKGEPLHDAILNGSGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI-NPLSRFFL 533
           F   G         A  +  ++  S F + +++  + ++++R    +        +    
Sbjct: 450 FLLSGVARYLFVPLAEAVVFAMCASYFFSRTLIPTLAMYLMRAPSKEEHAAQGRFAALTR 509

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   F   R     +           L  +              G      VD   
Sbjct: 510 FQARFERHFEALRSGYRAMLGRAIAGRRRFLPVYVALCLASLTLVPFAGRDFFPAVDTGQ 569

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           +R +L +     I       ++         P    A 
Sbjct: 570 IRLHLRAPTGTRIEETARITDQVEAKIRSVIPASDQAA 607



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/234 (16%), Positives = 80/234 (34%), Gaps = 8/234 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR     +            +      LQ +   S +   +++ VK  + +I        
Sbjct: 256 VRDVAHVIDGYAPQTNIVRSDGKRAALLQVEKTGSASTLTIIQQVKDMLPKIAAGLPKAL 315

Query: 654 TEIVGPKISRELIR--KGIV--GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             I     S  +     G+V   +I + +   + +     W   L    T+ L +  +L 
Sbjct: 316 HIIPLSDQSVFVKAAISGVVREALIAACLTAAMILLFLGSWRATLIIAVTIPLAVLTSLI 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             A  G   N+  +  +   +G  V+D  V  + +              D I     E  
Sbjct: 376 ALAALGQTINIMTLGGLALAVGILVDDATVAIENI---THHLEKGEPLHDAILNGSGEIA 432

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +  ++++  I  +PM +  G     F +P+A  +V A  +S F +  ++  +
Sbjct: 433 VPTFVSTLSICIVFVPMFLLSGVARYLF-VPLAEAVVFAMCASYFFSRTLIPTL 485



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ +   + + + + F  W   L  I+ L   +              ++ A+   +  IG
Sbjct: 891  LVFAIALVYLLMVVNFQSWLDPLIIISGLPASLAGIAWMLFATHTTLSVPALTGTILCIG 950

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R++++           +D   N      + T++A  I +LPMA+   
Sbjct: 951  IATANSILVINTARESLQAGM--EPLAAALDAGFNR-FRPVLMTALAMLIGMLPMALGLG 1007

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             GG         +  G+     S++     +   ++ W
Sbjct: 1008 DGGEQNAPLGRAVIGGLAFGTLSTLMFVPVVFGTVHAW 1045


>gi|262377596|ref|ZP_06070817.1| cation efflux system protein czcA [Acinetobacter lwoffii SH145]
 gi|262307483|gb|EEY88625.1| cation efflux system protein czcA [Acinetobacter lwoffii SH145]
          Length = 1052

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 163/599 (27%), Gaps = 55/599 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  W+++  +    IG+         +  +D  P      ++ +     G + L +E   
Sbjct: 30  NAIWVMLFIAAWIAIGIYS-----YQKLPIDAVPDIT-NTQVQINTSANGFTALEME--- 80

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S + K        R   +++T+ F D          +   LQ  
Sbjct: 81  -----QRITYPIENAMSGMPKMEQTRSISRYGLSQVTIIFEDGTDIYWARQLINQRLQEA 135

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQIGI 176
             ++  D + N+   +T                         A++           Q+  
Sbjct: 136 MGEMPEDVQPNMSPISTGLGEIYQWVIKAEPNAKKPDGTAYSAMDLREIQDWIVRPQLQR 195

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +               D +RL+QL    + +       N ++          + +
Sbjct: 196 VKGVAEINSIGGFNKTYVVAPDLNRLQQLQIPLSDLQTALTENNENRGAGYIEKNGQQLT 255

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +    +I  I +                                  N+     +
Sbjct: 256 VRVPGTLNTIEDIQNISIA--------------------NKNGYPIRVADVANVSIGHDL 295

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          I       +     +        ++       +            
Sbjct: 296 RTGAATYNGEETVLGIAMMMMGENSRTVAQAIDEKVQSIQQSLPKGVVIETVYDRTHLVD 355

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +    +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  L S
Sbjct: 356 RAIKTVQKNLIEGAILVIVILFLFLGNFRAALITACVIPLSMLFTLTGMAEQKISANLMS 415

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR----------AYSTIFDS 466
           +  +  GI   +D  +++ E       + Q +   L     R          A   +   
Sbjct: 416 LGALDFGII--IDGAVVIVENCIRRLAEAQKLKGGLLSRSERFKEVFLAAKQARRPLIFG 473

Query: 467 NITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +  L+  + +F   G         A+T+ L+++ +M  +++ V A +   +  +  ++ 
Sbjct: 474 QLIILVVYLPIFTLTGVEAKLFHPMAMTVVLALIGAMILSVTFVPAAVALFVTGEVKETE 533

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                         +   +    F  +  + +  +  +    T         +G   + 
Sbjct: 534 SRWMHWLKTKYELLLDKAYELRLFVTIVAACILVLTGVLATQTGSEFAPQLGEGDFAVQ 592


>gi|307327808|ref|ZP_07606991.1| MMPL domain protein [Streptomyces violaceusniger Tu 4113]
 gi|306886520|gb|EFN17523.1| MMPL domain protein [Streptomyces violaceusniger Tu 4113]
          Length = 731

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 81/676 (11%), Positives = 197/676 (29%), Gaps = 64/676 (9%)

Query: 212 MSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVD 271
           + F   +           +    +  G+    E  +E +G+                   
Sbjct: 28  LLFVVAVAVVGGMSGSRQMTNSENGTGDSARAEKILEDAGLQTPAGEMVMLRGDRPDGWR 87

Query: 272 ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGIL 331
            +  ++ AR         I  P+        L +  +     +   ++            
Sbjct: 88  GAARDLTARLERTGEAVRIQPPVRSESGREALISFEMKGDPDTAGKRVEPVVEAVKKTES 147

Query: 332 AAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVAD 391
           A                  +                +  G++L+V   +V      L+A 
Sbjct: 148 AHRGIVVYEFGDATAQHRLDDMLTNDFKKAELTAVPLALGILLVVFGALVAALLPVLLAV 207

Query: 392 FSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS 451
            +      L   +   L    +  S+   ++G+ + VD ++    R R+E    +    +
Sbjct: 208 TACVGTFGLLALVSHKLPMFDSTVSVM-FLVGLAVGVDYSLFYLRRERDERAAGRDAETA 266

Query: 452 LDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMM 511
           L +  + +   +  S +T ++A   +F  G     GFA+   L +L+SM  +++++ AM+
Sbjct: 267 LRIAAATSGRAVLISGVTVMLAMSGMFLSGLLLFHGFAVATILVVLMSMLGSVTVLPAML 326

Query: 512 IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS---------ICSIC 562
            ++        + +    R   +     +     R       +                 
Sbjct: 327 SWLGDRIDAGRVPLLNRRRKKGVHTSGGVTVKLMRPVLAKPKLFAVVSGALLLALSAPAL 386

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRP--------------------------VDLSVVRS 596
            + T  L     F     + V                                 ++  + 
Sbjct: 387 GMKTEQLGMDKQFGSDAPITVAYQEITGAFPGGPAPAEVVLRSDDIASPRFEAAIADFKK 446

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-------TRVLEMVKKKITEIVPLS 649
            L +      +          + R++                  + + +  KI   V   
Sbjct: 447 ELAASGRFGRTVDVEAHRTKGVARIEVPLAGDGEDATSRRALDTLRDDLVPKILGPVSDQ 506

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFK-WYFALGAITTLILDITKT 707
              + E+ G +   + ++  I  V +   A+  + + + F+    A+ +I   +L +   
Sbjct: 507 VYVSGELAGSRDFNDQLKTDIAPVFLFIAAVTFVLMLLCFRSLPIAIVSILLNLLSVGAA 566

Query: 708 LGFFA----------LFGIEF-----NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            G             L G+E      +   +  ++ L G S++  V V  R+R+    + 
Sbjct: 567 YGTMTAVFQHGWGADLLGMEPAGAIESWMPLFVLVILFGLSMDYHVFVVSRIRE---AHE 623

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA-ASS 811
             ++ RD I + I  T G     +          A+     +    + +A  ++V     
Sbjct: 624 RGLATRDAIREGIRTTAGSVTGAATIMVAVFAVFALLRMQDMQQMGVGLAVAVLVDATLV 683

Query: 812 SIFIAAPILLFIYDWR 827
            + +   ++  + +  
Sbjct: 684 RMVLLPSVMALLGERN 699


>gi|91778057|ref|YP_553265.1| AcrB/AcrD/AcrF family cation efflux protein [Burkholderia
           xenovorans LB400]
 gi|91690717|gb|ABE33915.1| cation/multidrug efflux pump, AcrB/AcrD/AcrF family, RND
           superfamily [Burkholderia xenovorans LB400]
          Length = 1082

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/636 (9%), Positives = 160/636 (25%), Gaps = 49/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  +I       A P  L  + +D  P                   ++   
Sbjct: 8   LKRPYTFIVMAILILL-----ATPFVLLTTPVDVLPEINIPV-----------VSIIWT- 50

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                    +      +        +                + +    +   ++   + 
Sbjct: 51  -YTGLSAQDMANRITSVNERSLTTTVNDIEHIESQSLAGITILKVFLQPTANIQSAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    ++       L+++ +   I ++    +  ++   A   +   +     Q+ 
Sbjct: 110 VAVEQAQLKQMPPGATPPLVISYSASSIPVIQLGLSSPKLSEQA--LNDTALNFLRPQLV 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + D   L     T + +       N         +     
Sbjct: 168 TIPGAAVPYPYGGKSRLISVDLDTRALLAKGLTPSDVVSAFNAQNLILPTGTAKIGPKEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +            +                     DI    +     +     ++    +
Sbjct: 228 TINMNGSPATVEGL--------------------NDIPVRTLNGATTYLREVAHVRDGYS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    + +   L    +A   P              
Sbjct: 268 PQTNIVRQDGHRGVLMSVLKNGSASTLSIVNSLRGLLPGAQAALPPDLKITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         + A L   ++ + +   +   +   SI L+++ +L  L  LG T+ + 
Sbjct: 328 KAAVQGVVREALVAAALTAAMILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHMGTNLHDAILDGAGEIAIPALVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + ++ +           + F 
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLMGHAHKPK-PGAKPNLFM 506

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +       F   R   + I     +              +       LG      VD  
Sbjct: 507 RLYHRFDRGFENMRAAYIMILSSVLVRRGMFGSVFLGFCVVSMGLIFVLGEDFFPSVDAG 566

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P + 
Sbjct: 567 DIRLHMRAPTGTRIEETARLADQVENVIREVVPANE 602



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 65/168 (38%), Gaps = 9/168 (5%)

Query: 671  VGVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +GV ++   +L+Y+ I      W   L  ++ L   +   +    L G   ++ A+   +
Sbjct: 883  LGVGVAMAIVLVYLLIVVNFQSWVDPLIIVSALPAALAGIVWMLFLTGTHLSVPALTGAI 942

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              +G +  + +++    R   +  +          ++    +   + T+ A  I ++PMA
Sbjct: 943  MTMGVATANSILMVAFAR---QRLSAGAPPLTAALEAGASRIRPVLMTAFAMIIGMIPMA 999

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +    G          +  G++ A  S++F    +   I+   A+  R
Sbjct: 1000 LGLGEGAEQNAPLGRAVIGGLLFATVSTLFFVPLVFAAIHTRLARRHR 1047



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +     W        ++ L I  +L      G   N+  +  +   +G  V+D  V  
Sbjct: 348 MILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIMTLGGLALAVGILVDDATVTI 407

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           + +    +      +  D I     E    ++ +++   I  +PM    G     F +P+
Sbjct: 408 ENI---ERHLHMGTNLHDAILDGAGEIAIPALVSTLCICIVFVPMFFLTGVARYLF-VPL 463

Query: 802 AFGIVVAASSSIFIAAPILLFI 823
           A  +V A  +S  ++  ++  +
Sbjct: 464 AEAVVFAMLASYVLSRTLVPTL 485


>gi|308071119|ref|YP_003872724.1| Cation/multidrug efflux pump [Paenibacillus polymyxa E681]
 gi|305860398|gb|ADM72186.1| Cation/multidrug efflux pump [Paenibacillus polymyxa E681]
          Length = 1038

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/525 (9%), Positives = 140/525 (26%), Gaps = 42/525 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++ + M+  +G+         +      P    +N +            V    
Sbjct: 7   KKRKITLLFFVMLILVGIF-----GFFKLPQQEMPDVTIQNAM---------VTTVYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++    ++       +     + I +   +    + + D +   +Q 
Sbjct: 53  SPQKVEQTVTKELEKRIKEVEGVKTVSSTSGNGFSSILIESKNGVDPQTVWDNMRKKVQD 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +  ++                +    S  + +  ++     DQ+       
Sbjct: 113 AQADLPQGAEVPVVNDKLTSSFIGSY---ALTADSSAPLYKLNDLTTTWKDQLNTISGVS 169

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     ++    D  +L+Q   +  +++       +                    
Sbjct: 170 SVKFNGLPDQEVGVHIDNQKLQQYQLSWGQVAQAIQSQIDRVPTGNIEY----------- 218

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                 K  +    +          +                  
Sbjct: 219 ---------NGRTYQLIVRETEKADELNQVLLTRTKEGNPVYLRDVGTTELAHPNAEYFA 269

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +         E        L     P                    
Sbjct: 270 YVEGKPAITLSIGAETGTDIPSMSEKVNTKLKELEKTLPPGVHFQTLFAQKDQVTHIFDD 329

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K    +    V++V  + +       VA  +I ++V + +  L + G TL   S+ G++
Sbjct: 330 LKRETILAIAAVILVCMLGLNMLTSAFVAL-AIPISVSIAIIFLPMFGITLNQISVVGLI 388

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + +G+ VD  ++VN+ I     +  +S   +   G      +I  + +  + A   L F 
Sbjct: 389 IVLGILVDDAVVVNDNIERRLTELGESPSVAAVKGTKEVMLSILVATLATISAFAPLLFL 448

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            G     +R     + L++L SM  +++I+     +  + ++ + 
Sbjct: 449 PGNVGAFIRPIPAIVSLTMLASMIMSLTIIPIFREWYEKRRQARH 493



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 85/245 (34%), Gaps = 6/245 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            PV L  V +   +    +            L        D  + +  +    K++ + +
Sbjct: 248 NPVYLRDVGTTELAHPNAEYFAYVEGKPAITLSIGAETGTDIPSMSEKVNTKLKELEKTL 307

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P      T          +        I++  A+++   +      +      + + ++ 
Sbjct: 308 PPGVHFQTLFAQKDQVTHIFDDLKRETILAIAAVILVCMLGLNMLTSAFVALAIPISVSI 367

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            + F  +FGI  N  +V  ++ ++G  V+D VVV D +    +L     S      K   
Sbjct: 368 AIIFLPMFGITLNQISVVGLIIVLGILVDDAVVVNDNI--ERRLTELGESPSVAAVKGTK 425

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E +   +  ++A   +  P+    G+V   I      ++  ++ +   S+ I  PI    
Sbjct: 426 EVMLSILVATLATISAFAPLLFLPGNVGAFIRPIPAIVSLTMLASMIMSLTII-PIFREW 484

Query: 824 YDWRA 828
           Y+ R 
Sbjct: 485 YEKRR 489



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/333 (9%), Positives = 108/333 (32%), Gaps = 7/333 (2%)

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
               +     ++  I   +    +++N  +    +     +               F   +
Sbjct: 696  IATVEGTTGIVDDIGIERYALELEVNKQAMDQYLVSYTDLTRTLLLLKEGAQVSQFDTGN 755

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
              +     LN+  +    +   +         +  + L  ++      Q         + 
Sbjct: 756  SLVDIKMYLNHNDEEPSKLFQQLSVVNAAGKQIPLNQLVQIKPSFAIQQIKHYNMERTIT 815

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            ++       A   ++++  K      P S            S      G + +++  + +
Sbjct: 816  VEADLNGRTASEAMVDVESKLAQMKFPESYKWEVGGETSDQSTIFKDLGQLAIVVVLLIL 875

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKV 738
            L+     +     +  I    + +    G   +F   +     ++  ++ L G  V + +
Sbjct: 876  LLITMQFYSLSIPI--IIMTTVYLAAAGGIIGIFLTDMPIGFMSIMGIIALAGIVVRNGI 933

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            V+ + +          +  ++ + ++        + TS+AA + ++P+A+ G  +    A
Sbjct: 934  VLIEFIEDARHE---GMELKEAVIQASAARFRPILLTSLAAIVGMIPLALLGSLLFKPLA 990

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              + FG++ +   ++F+   + + +  ++ +  
Sbjct: 991  FTVIFGLLFSTLLTLFVVPSLYMIMAKYKMRRQ 1023


>gi|306837072|ref|ZP_07470014.1| MmpL family membrane protein [Corynebacterium accolens ATCC 49726]
 gi|304567053|gb|EFM42676.1| MmpL family membrane protein [Corynebacterium accolens ATCC 49726]
          Length = 717

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/479 (13%), Positives = 144/479 (30%), Gaps = 45/479 (9%)

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +      L  +  LA+L+              +LG+GLA+D  + +  R REE  K  S 
Sbjct: 202 IVGGLSILGSLGILAILAGFLQVNVFAQAVVTLLGLGLAIDYGLFMVSRFREELDKGSST 261

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             ++    + A  T+  S     +A   LF F    ++  A     ++ ++   +++++ 
Sbjct: 262 KDAVSTTTATAGQTVVFSAAMVAVALSGLFLFPQAFLKSVAYGSISAVGLAALLSVTVLP 321

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIA----IQFMRARFWGVGISILFSI------ 558
           A+   +     + S+     +   +              RA+   + I  L         
Sbjct: 322 ALFGMLGPKIDLWSVRRTSRTARTIQDTWWYKLPRWAMRRAKGLTLAICGLLIALALPIM 381

Query: 559 ----------------CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                            +     T    +       ++L V       L  V   +  L 
Sbjct: 382 SITFGGINETYLPPNHDTRVAQDTFNDEFPAFRTEPVKLVVENATNEQLVDVVMQVRGLD 441

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                       K+    L     D     R++  ++           +  T  +  +  
Sbjct: 442 GLTEPMGPSTATKDGTTVLSAGIKDREDYARIVHELEDVKAPEGVNLYVGGTPAMEVESL 501

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF------- 714
             L  K     +   +A  I + + F  +   + AI   +L +  TLG   L        
Sbjct: 502 DALFHKLPWMALYVVLATFILMALVFSSFVLPIKAIVMTLLTLGATLGILTLMFVIGVGS 561

Query: 715 -------GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   +   V  +  + G S + +V +  RM +  +      S  + I      
Sbjct: 562 GALNFSPGPLMSPILVLIIAIIYGLSTDYEVFLVSRMVEARR---RGDSTDEAIAAGTAH 618

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYD 825
           T G     ++   +           ++   A  M F +++      + +   ++  + +
Sbjct: 619 TGGIITAAALIMIVVAGAFGFSDIVMMKYIAYGMIFALLIDATIVRMLLVPAVMHLLRE 677



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 53/141 (37%), Gaps = 6/141 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYS--VNDKVVVYDRMR 745
               A   +    L I  +LG  A+  G         AV+TL+G    ++  + +  R R
Sbjct: 193 SVVAAFMPLIVGGLSILGSLGILAILAGFLQVNVFAQAVVTLLGLGLAIDYGLFMVSRFR 252

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           + +       S +D +  +        V+++    +++  + ++  + + S A      +
Sbjct: 253 EEL---DKGSSTKDAVSTTTATAGQTVVFSAAMVAVALSGLFLFPQAFLKSVAYGSISAV 309

Query: 806 VVAASSSIFIAAPILLFIYDW 826
            +AA  S+ +   +   +   
Sbjct: 310 GLAALLSVTVLPALFGMLGPK 330


>gi|239624915|ref|ZP_04667946.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239521301|gb|EEQ61167.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1015

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 78/595 (13%), Positives = 185/595 (31%), Gaps = 48/595 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V+    +   GL   +     +S L+  P       I            V   
Sbjct: 8   LKRPVSTVLAILCLIVFGLSSVM-----KSPLELMPDMNMSMMI---------VMTVYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D VN  +    ++  S L          R+  + + L +          D +   + 
Sbjct: 54  ASPDDVNELVTKPIEDRASTLSGLDTISSQSRENTSIVMLKYDYGTDMNVAYDDLKKQMD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L  D +  +++         V+   +  +      +    +    + +     S 
Sbjct: 114 LAKTELPDDAEDPIMLELNTSLKPNVIMAVSHGEDD----DLYNYVNNNIVPEFEKLSSV 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +  +   +  E  P +L+Q   +   ++      + +       V          
Sbjct: 170 AEVSLAGGVQKYIKVELLPEKLKQYGVSMNSIAGDITGADLTYPAGNTEV---------- 219

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G      +     +T + + DI     G++  +     NI      +   
Sbjct: 220 ----------GDQKLAVSTEQPFETMESLNDIPLTVSGSQTVYLSDVANIYMGADDIESI 269

Query: 301 RVLTAPVINQAIP----SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
               A              K Q +   T+               P     V   +  + +
Sbjct: 270 ARYKAENGVPEDIVALTVSKQQDAATLTVSKDVSKVVDHLTKLDPTLQITVVNDDKDSIM 329

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S S    T  +   + ++++++     K  L+   SI ++++ +L L+ L+G +L + +
Sbjct: 330 SSLSSVIETMVLAIIISMVIIWLFFGDLKASLIVGSSIPVSILASLILMQLMGFSLNVIT 389

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK--NQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           ++ +VLG+G+ VD++ +V E           +    +   G    Y ++  S +T  +  
Sbjct: 390 LSALVLGVGMMVDNSTVVLESCFRATDDTGFREFSKAALNGTGVVYQSVIGSTLTTCVVF 449

Query: 475 VVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + L   G   G   R    T+   +  S+ +AI++V  +   I +  + K+   +     
Sbjct: 450 LPLAMLGGMTGMMFRPLGFTIVFCMTASLISAITVVP-LCYMIYKPIEKKTAPFSRPVEK 508

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                   +  +  +   V ++ +  +     L        +      Q+ V A 
Sbjct: 509 MQAAYRTIMGSLLKKRGLVMLASILLLLFSFFLARFLRMELMAEDDQGQITVTAE 563



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 93/253 (36%), Gaps = 9/253 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V    P   SV  +++  ++  D        +K + V +     ++  +    +++ + 
Sbjct: 763  SVTLQTPSGKSVALTDVAQIRFADSPASITRQDKQYRVTVSGIYTENSNKNTKTQLMDEV 822

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTL 700
            I   V  +           ++ E        + ++   + + +  +F+   F++  +TT+
Sbjct: 823  IKPNVGGTVSIAQNAQEESMATE-FSALFQAIGLAIFLVFVVMAAQFESPKFSIMVMTTI 881

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
               +    G   L     ++T++   L L+G  VN+ ++  D     +  Y   +     
Sbjct: 882  PFCLIGAFGLLWLADSAISMTSLLGFLMLVGTVVNNGILYVD----TVNQYRREMDLNTA 937

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            + ++    L   + T++   ++++PMA+     GS     A+    G+  +   S+ +  
Sbjct: 938  LVEAGATRLRPILMTTLTTVVAMVPMALALGDSGSTTQGLALVNVGGLTASTILSLLMLP 997

Query: 818  PILLFIYDWRAKN 830
                 +     K 
Sbjct: 998  AYYSLMNGGGKKR 1010



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 95/294 (32%), Gaps = 16/294 (5%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                           + T      ++    I L V  ++ V LS V +        +  
Sbjct: 210 LTYPAGNTEVGDQKLAVSTEQPFETMESLNDIPLTVSGSQTVYLSDVANIYMGADDIESI 269

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +           +            +                    +I      ++ I 
Sbjct: 270 ARYKAENGVPEDIVALTVSKQQDAATLTVSKDVSKVVDHLTKLDPTLQITVVNDDKDSIM 329

Query: 668 KGIVGVI----ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             +  VI    ++ I  ++ IW+ F     +L   +++ + I  +L    L G   N+  
Sbjct: 330 SSLSSVIETMVLAIIISMVIIWLFFGDLKASLIVGSSIPVSILASLILMQLMGFSLNVIT 389

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG---RSVYTSMAA 779
           ++A++  +G  V++  VV     ++    T    FR+    ++N T       + +++  
Sbjct: 390 LSALVLGVGMMVDNSTVVL----ESCFRATDDTGFREFSKAALNGTGVVYQSVIGSTLTT 445

Query: 780 FISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +  LP+A+ GG            + F +  +  S+I +  P+   IY    K 
Sbjct: 446 CVVFLPLAMLGGMTGMMFRPLGFTIVFCMTASLISAITVV-PLCYMIYKPIEKK 498


>gi|262368292|ref|ZP_06061621.1| cation efflux system protein czcA [Acinetobacter johnsonii SH046]
 gi|262315970|gb|EEY97008.1| cation efflux system protein czcA [Acinetobacter johnsonii SH046]
          Length = 1050

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 61/602 (10%), Positives = 162/602 (26%), Gaps = 59/602 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  W+++       +G+         +  +D  P                   +  + +
Sbjct: 25  QNAIWVMLFVCTWIAVGVYS-----YQKLPIDAVPDITNTQ-----------VQINTQAN 68

Query: 62  EDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +   + +    +     R   +++T+ F D         ++   +
Sbjct: 69  GFTALEVEQRITYPIETAMAGIPDLQLTRSISRYGLSQVTIVFEDGTDIYWARQQINQRV 128

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLS------QNNIDQVISHAIEQSMEIIRQRIDQ 173
           Q V + L  D    +   +T                   D     A++           Q
Sbjct: 129 QEVKADLPSDVSPTMSPVSTGLGEIYQWVIKVEPNAKKADGTSYSAMDLREIQDWIVRPQ 188

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       +               D +R++QL  + +++       N ++          
Sbjct: 189 LQRVAGVAEVNSIGGFNKTYVVAPDFNRMQQLNISLSQLQTALQENNENRGAGFIEENGQ 248

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           + +      +    +I    +     N         V I  D       +      +G  
Sbjct: 249 QLTVRVPGTLNSLADIENTTVASPNGNPIRVADIAQVSIDHDLRTGGATYNGEETVLGIA 308

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           + ++ +                    +     +        +++                
Sbjct: 309 MMMMGE--------------------NSRTVSKAVDAKIQEVQSSLPQGVRIETVYDRTT 348

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +    +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  
Sbjct: 349 LVEKAIKTVQKNLVEGAILVIVILFLFLGNIRAALITACVIPLSMLFTLTGMAQQNISAN 408

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTI 463
           L S+  +  GI   VD  +++ E                      F  + +   +A   +
Sbjct: 409 LMSLGALDFGII--VDGAVVIVENCIRRLAHAQQLLKRPLTQSERFKEVFLAARQARRPL 466

Query: 464 FDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               +  L+  + +F   G         A T+ L+++ ++  +IS V A +   ++    
Sbjct: 467 IFGQLIILVVYLPIFALTGVEAKMFHPMAFTVVLALVAAIILSISFVPAAVALFVKGDIK 526

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           ++     L         +   +            L  +  +              +G   
Sbjct: 527 ETESRWMLWLKEHYQRVLDCVYQYKAVVLTFALCLLMLTGLLATRIGSEFAPQLSEGDFA 586

Query: 581 LG 582
           + 
Sbjct: 587 VQ 588



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 78/216 (36%), Gaps = 7/216 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++ ++++ D   Q         V +          + V E+  +     +P        
Sbjct: 816  TDIATVKMMDGINQVSRENGKRRVIVTANVEGRDLGSFVTEVQSQLKQYPLPSGYWIEYG 875

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                 ++    R  IV  +      ++ + +      +L   T +   +T  + F  L  
Sbjct: 876  GQFENLASAQARMQIVIPLALLTIFILLMAVFHNIKESLLVFTGVPFALTGGVLFLWLRD 935

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            I  +++A    + L G +V + +V+   +++  + Y       + + +     L   + T
Sbjct: 936  IPLSMSAGIGFIALSGVAVLNGLVMLTFIKELREQYR----LHEAVWQGAILRLRPVLMT 991

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
            +  A +  +PMA+    G  V    A  +  GI+ +
Sbjct: 992  ACVASLGFVPMALATGTGAEVQRPLATVVIGGIISS 1027



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 81/254 (31%), Gaps = 13/254 (5%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            P+ ++ +        +          E    + +     +S   ++ ++   +++   +
Sbjct: 275 NPIRVADIAQVSIDHDLRTGGATYNGEETVLGIAMMMMGENSRTVSKAVDAKIQEVQSSL 334

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
           P      T      +  + I+     ++  + + ++I          AL     + L + 
Sbjct: 335 PQGVRIETVYDRTTLVEKAIKTVQKNLVEGAILVIVILFLFLGNIRAALITACVIPLSML 394

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MR------KNMKLYTTSISFR 758
            TL   A   I  NL ++ A+    G  V+  VV+ +  +R      + +K   T     
Sbjct: 395 FTLTGMAQQNISANLMSLGAL--DFGIIVDGAVVIVENCIRRLAHAQQLLKRPLTQSERF 452

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFI 815
             +  +  +     ++  +   +  LP+    G    +    A  +   +V A   SI  
Sbjct: 453 KEVFLAARQARRPLIFGQLIILVVYLPIFALTGVEAKMFHPMAFTVVLALVAAIILSISF 512

Query: 816 AAPILLFIYDWRAK 829
               +        K
Sbjct: 513 VPAAVALFVKGDIK 526


>gi|94500793|ref|ZP_01307322.1| Co/Zn/Cd efflux system membrane component [Oceanobacter sp. RED65]
 gi|94427115|gb|EAT12096.1| Co/Zn/Cd efflux system membrane component [Oceanobacter sp. RED65]
          Length = 1036

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/590 (11%), Positives = 172/590 (29%), Gaps = 41/590 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N +LV+L +++     + ++ N    + +D  P       I                   
Sbjct: 12  NRFLVVLATVLVIAFGIFSVKN----TPVDAIPDLSDVQVI---------IKTQYPGQSP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F D         +V  +L  V 
Sbjct: 59  QVVQDQVTYPLTTALLSVPGAKTVRGFSFFGDSYVYVIFDDDTDIYWARSRVLEYLNQV- 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    K  L    +      +              + +         ++       + 
Sbjct: 118 -DLPNGVKSQLGPDASGVGWVFLY-ALQDKTGQLDLSQLTSLQNWFLKYELQTVPGVSEV 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q     DP +LR      A +S      N      +  +        +   +
Sbjct: 176 ATVGGMVKQYQVTVDPVKLRGYNIPLAHISNAIQQGNQETGASVIEMAEAEYMVSSSGYI 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +++ ++                    V +  +E G+        D    P        + 
Sbjct: 236 QNQQDLR------------------EVPLGLNENGSPLLLGDVADVRLGPQMRRGIAELD 277

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   I   ++  +   TI+        ++ G       I      G    +     
Sbjct: 278 GEGETVGGIIVMRSGENALQTIDGVKKKLESVKLGLPEGVEIIPVYDRSGLIYRAVDNLW 337

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T      +V++V  + + + +  LVA  S+ + +++   ++ L G    + S+ GI + 
Sbjct: 338 NTLIEELAIVVLVCIVFLFHVRSSLVAMISLPVGILVAYIIMYLQGINANIMSLGGIAIA 397

Query: 424 IGLAVDSNILVNERIREENR----KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG  +D  I++ E + +         ++ +  +          +F S +   ++ + +F 
Sbjct: 398 IGAMIDGAIVMIENMHKHMERTPLNRENRWQVVVQAAQEVGPALFFSLLIITVSFIPVFT 457

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  +   +I++V  +M + +R + +                
Sbjct: 458 LEAQEGRLFSPLAFTKTYAMAAAAALSITLVPVLMGYFVRGRVLPEKKNPVNRLLIAGYA 517

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +  + +      + ++++F + ++  +   G  +      G  + +   
Sbjct: 518 PVLKRLLHYPKTVLSVALIFVLVTLWPMQKLGSEFMPPLDEGDLMYMPTT 567



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/122 (18%), Positives = 51/122 (41%), Gaps = 1/122 (0%)

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           I +L+ I   F    +L A+ +L + I        L GI  N+ ++  +   IG  ++  
Sbjct: 346 IVVLVCIVFLFHVRSSLVAMISLPVGILVAYIIMYLQGINANIMSLGGIAIAIGAMIDGA 405

Query: 738 VVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           +V+ + M K+M+       +   ++ ++  E      ++ +   +S +P+          
Sbjct: 406 IVMIENMHKHMERTPLNRENRWQVVVQAAQEVGPALFFSLLIITVSFIPVFTLEAQEGRL 465

Query: 797 FA 798
           F+
Sbjct: 466 FS 467



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 8/146 (5%)

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----DRMRKNMKL 750
              +TTL   +T ++         F++      + L G +V   V++         + MK 
Sbjct: 890  ILMTTLPFSLTGSIWLMYALDFNFSIAVGVGFIALAGVAVETGVIMLVYLNQAYDEYMKQ 949

Query: 751  Y-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
              +   +    + +  +  +   + T+ A    +LP+      G  ++   A PM  G++
Sbjct: 950  NASQKTTLLQTVYEGASLRVRPVLMTAGATIAGLLPILFSTGTGSEIMSRLAAPMVGGML 1009

Query: 807  VAASSSIFIAAPILLFIYDWRAKNAR 832
             +   ++FI   I         +  +
Sbjct: 1010 TSIILTLFIIPVIYYSWKSLCRQKMK 1035


>gi|17232786|ref|NP_489334.1| hypothetical protein alr5294 [Nostoc sp. PCC 7120]
 gi|17134433|dbj|BAB76993.1| alr5294 [Nostoc sp. PCC 7120]
          Length = 1080

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/542 (12%), Positives = 159/542 (29%), Gaps = 39/542 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            ++L   +  +G+   +     +  +D  PS               G  +       +  
Sbjct: 23  TLMLTLAVIVLGVFFIV-----KLPVDLLPSITYPRI---------GVRIQAPGISPEVG 68

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    +E  S  +         R+ Q  + L F      +   +  T        +L
Sbjct: 69  VDEVTRPLEEAFSATEGVVQIFSQTREGQVSLDLYFQPGGNIDQALNDATAAFNRSRGRL 128

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
               ++  L      ++ +   +  +       ++  +    +   ++G+         S
Sbjct: 129 PDTIEEPRLFKIDPSQLPV--YEFALTSPSLEGLDLRVFAEEELARELGVVSGVAGVDVS 186

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +  ++    D  RL+ L      +       N    G     +            ++ 
Sbjct: 187 GGVQEEIRVNIDLDRLQALGVGLTDVLDELRDRNVDISGGRILGQNSEPLTRTVGRFQNA 246

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            E+  +    ++        +  V         RR +      I            L   
Sbjct: 247 DELRNLSFEVSSTASSNPNQQQNVS-------NRRVYLRDFAQIIDGAEQQRIYVSLNGE 299

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRA--GSLPIKLNIVEERNVGADLGSDSIYKG 364
              +     +   +    ++        LR         +             S S    
Sbjct: 300 PAVKVSVQKQPDANTINVVDAVKKRLEELRQSSIVPEGTVITPTLDESRFIRNSISNVTS 359

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           +  I   L  I + + +   +   +   +I L  +  + L+ L G ++ + S+ G+ LG+
Sbjct: 360 SGLIGTALAAIAVLLFLGSLRQTFIIVVAIPLATLAAIILMGLFGLSINVFSLGGLALGV 419

Query: 425 GLAVDSNILVNERI-----------REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           G+ VD++I++ E I            +    ++ +    +       S +  S  T L+A
Sbjct: 420 GIVVDNSIVMLENIAEGAGVTPGKDSKSRLSHKQLIAQAETSSQEVESALIASTSTNLVA 479

Query: 474 TVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +     GG          +T+  S+  S+  A+++V  +   ++ +K    +      R
Sbjct: 480 VLPFLLIGGFIALLFNELILTITFSVAASIIIAVTVVPMLTSRLLGWKFSSGLSNFWPLR 539

Query: 531 FF 532
            F
Sbjct: 540 KF 541



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 65/176 (36%), Gaps = 26/176 (14%)

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGY 732
            ++  + + + +++      L  +    + +    G F L         T +   + L+G 
Sbjct: 906  ASFLVFVVMAVQYNSLIDPL--VIMFTIPLALAGGIFGLYITNTAIGATVIVGAVLLVGI 963

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
             VN+ +++ +    N       +  R  I ++  + L   + T++   + + P+A+    
Sbjct: 964  VVNNAIIMVE--LANQIRDRDKVDRRTAILQAAPQRLRPILMTTITTVLGMFPLALGIGE 1021

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAA----------------PILLFIYDWRAK 829
            G   +    + +  G+ +A   ++FI                  P+ ++   W+ +
Sbjct: 1022 GSEFLQPLGVVVFSGLSLATLLTLFIIPCFYILLHDLFSGAWSKPVFIWWRMWKKR 1077



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/267 (14%), Positives = 92/267 (34%), Gaps = 15/267 (5%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             N   +            + +D +  +    SL        +   + +           
Sbjct: 263 NPNQQQNVSNRRVYLRDFAQIIDGAEQQRIYVSLNGEPAVKVSVQKQPDANTINVVDAVK 322

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              +      +  + T I P                 +   G++G  ++AIA+L+++   
Sbjct: 323 KRLEELRQSSIVPEGTVITPTLDESRFIRNSIS---NVTSSGLIGTALAAIAVLLFLG-- 377

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                    +  + L     +    LFG+  N+ ++  +   +G  V++ +V+ + + + 
Sbjct: 378 -SLRQTFIIVVAIPLATLAAIILMGLFGLSINVFSLGGLALGVGIVVDNSIVMLENIAEG 436

Query: 748 M-----KLYTTSISFRDLI---DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
                 K   + +S + LI   + S  E     + ++    ++VLP  + GG +   F  
Sbjct: 437 AGVTPGKDSKSRLSHKQLIAQAETSSQEVESALIASTSTNLVAVLPFLLIGGFIALLFNE 496

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDW 826
            +   I  + ++SI IA  ++  +   
Sbjct: 497 -LILTITFSVAASIIIAVTVVPMLTSR 522


>gi|332141458|ref|YP_004427196.1| Heavy metal efflux pump CzcA [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327551480|gb|AEA98198.1| Heavy metal efflux pump CzcA [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 1069

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 73/631 (11%), Positives = 174/631 (27%), Gaps = 61/631 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            +  LV++      +  +  +P    +  LD FP                 +++ + V+ 
Sbjct: 11  TSRLLVVIALTTLIVSAVFVIP----KLNLDAFPDV---------------TNVQVSVNT 51

Query: 63  D------DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +      + V   +    + +   L          +   + +T+ F++          V 
Sbjct: 52  EAPGLAAEEVEQLITYPIEAVMYALPDVMEVRSISKTGLSGVTVVFSEGTDIYFARQLVF 111

Query: 117 LFLQGVNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             LQ     +        +   T+                   A+             + 
Sbjct: 112 ERLQAAKELIPEGVGTPEMGPNTSGLGQVYQYLLLAEPDSGLDAMALRSLNDWVVKLLLL 171

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            ++     L     + Q     +PS+L     T   +       N +  G+        +
Sbjct: 172 PADGVTDVLSFGGEVRQYQVNLNPSQLLGYGLTQDIVMEALERNNTNVGGWYM------N 225

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
               Q ++     +             P        I+  ++         R        
Sbjct: 226 RGQEQLVIRGTGWLDHGEEGLEQLRQVPLKTVDGTTITVSDVANVELGSEIRQGAATMTR 285

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              DG +     +   I   +   +   TI+        +           V        
Sbjct: 286 KDADGNIQNLGEVVSGIVLKRMGANTKATIDGVNARIQRINQALPDGVSFEVFYDQADLI 345

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         +    ++++L + ++  +   +   SI +++ + L ++S  G +  L 
Sbjct: 346 TQAVDTVVNALMLAFVFIIVILALFLMNLRATFLVLISIPISIGIALMVMSWFGLSANLM 405

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC------------------------- 450
           S+ GI + IG+ VD ++++ E + +      +                            
Sbjct: 406 SLGGIAVAIGMLVDGSVVMVENMFKHLTHTDAEHDHKRQLGEHVEDDDPLDSSHDTHGIA 465

Query: 451 -SLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISI 506
             L          IF +    L+  + LF F G      +  AI++ L++L ++  A+ I
Sbjct: 466 LRLQEAGKEVARPIFFATAIILVVFMPLFSFEGVEAKLFQPMAISIMLAMLSAVLVALII 525

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           V A+  ++ +        +            ++   +  +      +I+     + L   
Sbjct: 526 VPALATYLFKKGVKPRESVVLKPLDAGYRKGLSWAILHKKVVIGIAAIMVVAAGVVLPRL 585

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                    +G I L V       L      
Sbjct: 586 GTEFVPELEEGTINLRVTLAPSSSLDTALEV 616



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/320 (9%), Positives = 99/320 (30%), Gaps = 27/320 (8%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      +  +         L     +         I +  +AN  +   + +   
Sbjct: 222 WYMNRGQEQLVIRGTGWLDHGEEGLEQLRQVPLKTVDGTTITVSDVANVELGSEIRQGAA 281

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
              +          GE    + L+    ++ A    +    ++I + +P           
Sbjct: 282 TMTRKDADGNIQNLGEVVSGIVLKRMGANTKATIDGVNARIQRINQALPDGVSFEVFYDQ 341

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE 717
             +  + +   +  ++++ + +++ + +           + ++ + I   L   + FG+ 
Sbjct: 342 ADLITQAVDTVVNALMLAFVFIIVILALFLMNLRATFLVLISIPISIGIALMVMSWFGLS 401

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM----KLYTTSISFRDLID----------- 762
            NL ++  +   IG  V+  VV+ + M K++      +       + ++           
Sbjct: 402 ANLMSLGGIAVAIGMLVDGSVVMVENMFKHLTHTDAEHDHKRQLGEHVEDDDPLDSSHDT 461

Query: 763 --------KSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASS 811
                   ++  E      + +    +  +P+  + G    +    AI +   ++ A   
Sbjct: 462 HGIALRLQEAGKEVARPIFFATAIILVVFMPLFSFEGVEAKLFQPMAISIMLAMLSAVLV 521

Query: 812 SIFIAAPILLFIYDWRAKNA 831
           ++ I   +  +++    K  
Sbjct: 522 ALIIVPALATYLFKKGVKPR 541



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 59/144 (40%), Gaps = 8/144 (5%)

Query: 692  FALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            F    +  + + +    G F+L   G   ++ +    +TL G +V + VV+ + +    +
Sbjct: 923  FGQAMLILVNVPLAVIGGVFSLWLSGQYLSVPSSVGFITLFGVAVLNGVVMVESIN---Q 979

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
                 +S  D +       L   + T++ + + ++PM +    G  +    A  +  G+V
Sbjct: 980  RVADGLSVSDAVFDGATSRLRPVLMTAITSALGLIPMLLSNGVGAEIQKPLASVIVGGLV 1039

Query: 807  VAASSSIFIAAPILLFIYDWRAKN 830
             A   ++F+   +  +    + K+
Sbjct: 1040 TATFLTLFVLPVLFAWFSKGKLKD 1063


>gi|220925459|ref|YP_002500761.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
 gi|219950066|gb|ACL60458.1| acriflavin resistance protein [Methylobacterium nodulans ORS 2060]
          Length = 1031

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/599 (11%), Positives = 167/599 (27%), Gaps = 48/599 (8%)

Query: 14  ICCIGLLIALPNFLP--QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVNGF 69
           +    +++ L       +  +D FP                   ++ E +      V   
Sbjct: 1   MIAAAIVLVLYGAFTVTRLPVDVFPDLNKPT-----------VTIMAEAEGYAPPEVEQL 49

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +   + L              + + + F           +V   L  V  +L   
Sbjct: 50  VTYPIETRMNGLPGVSRVRSVSGVGLSIVYVEFDWGTDIFRNRQQVAERLALVQDQLPRG 109

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               +   ++     ++++  +         E +   IR    ++       Q +     
Sbjct: 110 VIPQMGPVSSIMGQILLVAVTSDTAGPMEMREVADFTIR---PRLLTIPGVAQVIPIGGE 166

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     +P+ +R L  T A++         +  G             N        ++
Sbjct: 167 VRQFRVSPNPAAMRALGLTNAQLEAALQQFGTNAGGGFTDQYAREYLIRNIARTTSLDDL 226

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             + +               V  +                         D      P + 
Sbjct: 227 RNLVVATVNDVPVSLRQVAEVAFAAKVKRG-------------------DAGYQGKPAVI 267

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
            ++       +   T      L  +  +    IK + +  R       S    +      
Sbjct: 268 VSVEKQPGIDTVVLTRNIEQALKDLAPSLPAGIKADQILFRQADFIETSIRNLERVLVEA 327

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V +VLF  +L  +   ++  +I ++V+ T  +  L G ++   ++ G+ + IG  VD
Sbjct: 328 VMVVALVLFGFLLNLRTTAISLLAIPVSVLTTAVVFHLFGLSINTMTLGGLAIAIGELVD 387

Query: 430 SNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---F 480
             ++  E I     +N      +SVF  +    +   S I  + +  ++  V LF     
Sbjct: 388 DAVVDVENIFRRLGENRAAGSPRSVFEVVVAASNEVRSGIVYATMIIILVFVPLFALSGI 447

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR--YKKMKSIDINPLSRFFLIPDCI 538
            G           +SIL S+ T+I++   +   ++       +       +        +
Sbjct: 448 EGRLFAPLGQAYIISILASLVTSITLTPVLASLLLPGLKNLEEHDSRFLKALKRGNAALL 507

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
            + F   R    G++                      +G   + +     + L+     
Sbjct: 508 HVAFRHQRLLVGGVAAAVIAAGAAAWNLPRAFLPPFNEGSFTVNMTFAPGISLAESSRV 566



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 9/215 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             V  Q      V    + + +K     +                    IR     ++ +
Sbjct: 268 VSVEKQPGIDTVVLTRNIEQALKDLAPSLPAGIKADQILFRQADFIETSIRNLERVLVEA 327

Query: 677 AIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            + + + ++           ++  + + +  T   F LFG+  N   +  +   IG  V+
Sbjct: 328 VMVVALVLFGFLLNLRTTAISLLAIPVSVLTTAVVFHLFGLSINTMTLGGLAIAIGELVD 387

Query: 736 DKVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           D VV    ++ R+ +N    +   S  +++  + NE     VY +M   +  +P+    G
Sbjct: 388 DAVVDVENIFRRLGENRAAGSPR-SVFEVVVAASNEVRSGIVYATMIIILVFVPLFALSG 446

Query: 792 SVIGSFAI---PMAFGIVVAASSSIFIAAPILLFI 823
                FA         I+ +  +SI +   +   +
Sbjct: 447 IEGRLFAPLGQAYIISILASLVTSITLTPVLASLL 481


>gi|298504502|gb|ADI83225.1| efflux pump, RND family, inner membrane protein [Geobacter
           sulfurreducens KN400]
          Length = 1077

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 67/516 (12%), Positives = 156/516 (30%), Gaps = 25/516 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +    ++      +G+   L         +  P  +               +L +     
Sbjct: 19  SKLTPLIVIASLLLGVYAVLVT-----PREEEPQIVVPMV---------DIYLPMPGSTP 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +    +     L          R     +T+ F      E+   K+   L    
Sbjct: 65  QEVEERVVSPIERKMWELNGVEYVYAMSRPGMGLVTVRFLVGENMEDSLVKLYNKLMSNR 124

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L     + L+V  +  ++ I+      ++     + +   I R+  D++   E+  + 
Sbjct: 125 GLLPPGAGEPLVVPKSIDDVPILSLTLWSERYDGFMLRR---IAREICDELKKGENVAEA 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                +   L    D +RL     +  +++      N S +   F              +
Sbjct: 182 EIKGGLNRTLSVRLDSARLAAYNLSPLQVAAAIHAGNASLQSGAFAADNRETIVETGSFI 241

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
            D  +   + +               V     E     FF +      K ++        
Sbjct: 242 ADADDARRLVVGVFNGRPVYLADVATVTDGAPEPANYVFFGLGPAAGTKGISGNQAENY- 300

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                     + +   +  +  E        L+   +P  + +   RN G      +   
Sbjct: 301 ---PAVTIAVAKRKGANATWVAEDLLHRVEALKGKVIPSDVKVTVTRNYGETAREKNNEL 357

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                +A + + +L  + +  + G VA  +I + + LT+ + + +G TL   ++  ++  
Sbjct: 358 LYHMFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMLVFNQIGYTLNRITLFALIFS 417

Query: 424 IGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           IG+ VD  I+V E I             +         +    +    + + + + F G 
Sbjct: 418 IGILVDDAIVVVENIHRYFTTTRFKPLEAAIRAVDEIGNPTVLATFAVIASILPMGFVGG 477

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
             G  +R   +   +++L+SMF A  +       ++
Sbjct: 478 LMGPYMRPIPVGASMAMLLSMFIAFIVTPYFAYRLM 513



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 5/156 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++AI++ I I +   W     A   + + +  T+  F   G   N   + A++  IG 
Sbjct: 361 MFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMLVFNQIGYTLNRITLFALIFSIGI 420

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + + +     TT     +   ++++E    +V  + A   S+LPM   GG 
Sbjct: 421 LVDDAIVVVENIHRYFT--TTRFKPLEAAIRAVDEIGNPTVLATFAVIASILPMGFVGGL 478

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +   +    +  +  ++++   +  +       +  
Sbjct: 479 MGPYMRPIPVGASMAMLLSMFIAFIVTPYFAYRLMK 514



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 86/244 (35%), Gaps = 7/244 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D ++ R NL+S+               + +    +  D +       + ++  T+     
Sbjct: 830  DQTLYRKNLKSVVYVTGDVAGAIEAPVYAILQMQKEIDKIPLPGGYRIEQRAATQPWSEE 889

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
                       I+ E+ R   +      I + + +   FK +   L  +  + L +   L
Sbjct: 890  RPGIKWDGEWHITYEVFRDLGLAFGAVMILIYLLVVAWFKDFTTPLVIMGPIPLTLIGIL 949

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               ALFG  F  T++   + L G  V + +++ D     MK     +   + I ++    
Sbjct: 950  PGHALFGAFFTATSMIGFIALAGIIVRNSIILID--FAEMKR-REGLPLDEAIIEAGAVR 1006

Query: 769  LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                + T  A  +    +      +    A+ + FG + + + S  +  PI+ F+ +   
Sbjct: 1007 FRPMLLTGAAVVVGSFVIVF--DPIFQGLALALMFGEIASTTLSR-VTIPIVYFLVERWK 1063

Query: 829  KNAR 832
            +  R
Sbjct: 1064 EKRR 1067


>gi|119475718|ref|ZP_01616071.1| AcrB/AcrD/AcrF family protein [marine gamma proteobacterium
           HTCC2143]
 gi|119451921|gb|EAW33154.1| AcrB/AcrD/AcrF family protein [marine gamma proteobacterium
           HTCC2143]
          Length = 1059

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/470 (12%), Positives = 135/470 (28%), Gaps = 27/470 (5%)

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +     L    +     ++       S  +    + + F  S         V   +  
Sbjct: 55  SPEDSERLLAKPMELELRAIEGVKEISASAGEGSAVLIIEFDVSFESNQAISDVREAVDK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +K+    ++ ++      E  +V+     + V    +     I R+  D++      +
Sbjct: 115 AKAKIPSTAEEPIINEIRAAEFPVVVVSFAGNDVPERTLYN---IARKMRDKLETIPGVL 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP++L     T  ++       N               S     
Sbjct: 172 SADLQGHREELLEAVVDPAQLETYGITNNELFNAVSSNNRLIAAGAMDTGKGSFSVKVPG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+E                      + V+D+                 + +     ++  
Sbjct: 232 LLESG--------------------RDVLDLPIKASADGVITLSNVTEVRRTFKDAVNFT 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
              +        S +   +   T++    +                      + L   + 
Sbjct: 272 RANSQTSISLEISKRKNANLIDTVDEVRRIVNEEAVNFPVSVNVRFMNDQAPSTLEQVNT 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +G       LVL+V+   V     G++    I  + + +  +LS L  T  +  + G++
Sbjct: 332 LEGNITTAMLLVLVVVVAAVGLR-SGILVALGIPFSFLFSFIILSYLDYTYNMMVMFGML 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           LG+G+ VD  I++ E    +  +  S   +      R +  +  S  T L A + L F+ 
Sbjct: 391 LGLGMLVDGAIVIIEYADRKMTEGLSPTEAYIDSTKRMFWPVLASTATTLAAFLPLLFWP 450

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              G  ++   +T+   +  ++  A+     +     +  K      +  
Sbjct: 451 GVMGDFMKYLPVTVFAVMAGALLYALLFAPVLGALFSKPIKADKKTKHYY 500



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 7/146 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               +     +      +    +     +N+  +  +L  +G  V+  +V+   +    +
Sbjct: 353 LRSGILVALGIPFSFLFSFIILSYLDYTYNMMVMFGMLLGLGMLVDGAIVI---IEYADR 409

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI---PMAFGIV 806
             T  +S  +    S        + ++     + LP+  W G V+G F        F ++
Sbjct: 410 KMTEGLSPTEAYIDSTKRMFWPVLASTATTLAAFLPLLFWPG-VMGDFMKYLPVTVFAVM 468

Query: 807 VAASSSIFIAAPILLFIYDWRAKNAR 832
             A     + AP+L  ++    K  +
Sbjct: 469 AGALLYALLFAPVLGALFSKPIKADK 494



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/163 (18%), Positives = 61/163 (37%), Gaps = 20/163 (12%)

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
             ++    L A+      +   LG          +     ++ L G  VN+ +V+ D    
Sbjct: 886  FYQSALILSAVIM--STVGVLLGLIIFDQTFSTVMTGVGIVALAGIIVNNNIVLIDTYN- 942

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV------------WGGSVI 794
             +++       +D+I ++  + L     T+      +LPMA+            +GG  +
Sbjct: 943  YLRIEHKDWHIKDVIVRTGAQRLRPVFLTTFTTGFGLLPMALGTSVDVFSRNIEFGG-PV 1001

Query: 795  GSF----AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             SF    A  +  G+  A   ++ +   +L+  Y  RA   +I
Sbjct: 1002 ASFWTHLASAIVSGLTFATLLTLIVTPAMLIMPYHLRALIKKI 1044


>gi|52841242|ref|YP_095041.1| cobalt/zinc/cadmium efflux RND transporter, permease protein HelA
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
 gi|52628353|gb|AAU27094.1| cobalt/zinc/cadmium efflux RND transporter, permease protein HelA
           [Legionella pneumophila subsp. pneumophila str.
           Philadelphia 1]
          Length = 1050

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/600 (12%), Positives = 161/600 (26%), Gaps = 57/600 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +++  ++++   +I  +G+         +  +D  P                   +  + 
Sbjct: 11  LKHRWFVLLFTFIIAVLGVY-----NFQRLPIDAVPDITNVQ-----------VQINTQA 54

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  V   +    +   S L          R   +++T+ F D          +   
Sbjct: 55  SGYSPFEVEQRITFPIELAMSGLPNLDYTRSLSRYGLSQVTVVFKDGTNIYFARQLINER 114

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH----AIEQSMEIIRQRIDQI 174
           LQ V  KL  + +  L   +T      + +  N   +        +E           Q+
Sbjct: 115 LQEVKDKLPPEAETTLGPISTGLGEIFMYTVTNKSNLPKSQRYNPMELRTIQDWIIKPQL 174

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
              E   +         Q     DP++L +   +   +       N +           +
Sbjct: 175 RNVEGVAEVNTIGGYEKQFHITPDPTKLVRYGLSLNNVVEALERNNANVGAGYIERNGEQ 234

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           +       V++  +I  I +                                   +    
Sbjct: 235 NLIRVPGQVKNIADIENIVVANFE--------------------GTPVRIRDVAEVALGK 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          +        
Sbjct: 275 ELRTGAATENGDEVVLGTVFMLMGENSRTVSQRVAAKMKEINKSLPEGVEAVTVYNRTLL 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV ++LF+ +   +  L+    I L+++LT+  +     +  L
Sbjct: 335 VNATINTVKKNLLEGALLVCVILFLFLGNVRAALITAMVIPLSMLLTITGMVTNQISANL 394

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYSTI 463
            S+    L  GL VD  +++ E   +   + Q     +     R              +I
Sbjct: 395 MSLGA--LDFGLIVDGAVIIVENCIKHLGEQQHALQRILNLEERLKTIAYATTEVIRPSI 452

Query: 464 FDSNITALIATVVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
           F   I  ++   +L   G         A T+ +++L SM  A++ V A +   +R    +
Sbjct: 453 FGVFIITVVYLPILTLTGVEGKMFLPMAETVIIALLASMLFALTFVPAAVAIFLRGHIQE 512

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +   F   R       +L  I  +      G       +G I +
Sbjct: 513 KENRLVHFLSIGYAKVLRRCFHARRQVIGAAVVLVIISFMLAFRLGGEFIPSLDEGDIAM 572



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 90/249 (36%), Gaps = 12/249 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             + LS V   + S     IS +           ++ +   S        + +K       
Sbjct: 802  FIPLSEVAKMVRSESPNQISREVGKRRVVVTANVRNRDLSSFVNEAKQRIEQKVKVPSGY 861

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              T           S+ L     + V I+ + + + +++ F        + + I  +  T
Sbjct: 862  WITWGGQFEQLQSASQRLQ----IVVPITLLGIFLLLFMSFGNARNALLVFSGI-PLALT 916

Query: 708  LGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             G FAL+  GI  +++A    + L G +V + +V+   +  N          +D + +  
Sbjct: 917  GGVFALWLRGIPLSISAGVGFIALSGVAVLNGLVMITFI--NKLREQKKYYLKDAVLQGS 974

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   +   
Sbjct: 975  LARLRPVLMTALVASLGFVPMALATGTGSEVQRPLATVVIGGIISSTFLTLLVLPGLYYI 1034

Query: 823  IYDWRAKNA 831
             ++ R K  
Sbjct: 1035 FHERRKKQG 1043


>gi|325295653|ref|YP_004282167.1| acriflavin resistance protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066101|gb|ADY74108.1| acriflavin resistance protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 1037

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/528 (12%), Positives = 164/528 (31%), Gaps = 46/528 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV- 60
           R    ++ +    C IGL+        +     FP A               + + +E  
Sbjct: 10  RKPHAILAILLFFCVIGLI-----GFKEIPRKFFPDANRPQI----------AIVTVEPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++    L          +   + +T+ F   +  +  A  V+  L 
Sbjct: 55  ASAEDVASHITRPIEQRMKTLDLVRTVRSISKDEVSVVTVEFEYEKGIDAAATDVSNELS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ-RIDQIGISES 179
            V   L  D     +   T+    +++   +  Q    ++ Q  EI      D++    +
Sbjct: 115 KVLPFLPNDILPPQVYKVTDATNPVMVIAVSPKQRSGLSLAQVREIAENEIKDRLLNLPN 174

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       ++    D  +L +   +  +++      N +               G 
Sbjct: 175 VSDVEIFGGYKREIRIYPDYLKLAKYNISFYQLAKAIRENNKNVP------------IGL 222

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
               E  V +                  P + +                 +       L 
Sbjct: 223 TINKEGLVVLKLEDEVDRIEKLKNIYIAPNIKL------------KDVAKVDWGYKDRLS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                             +      IE+       L+     +   I  +        S+
Sbjct: 271 AYHGNGKPAIGISILRSPKGYELPAIESVMNFLPKLKKLYPQLNFEI-ADTQEWMIKLSN 329

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                       + L V+F+ +   +  +V+ FSI +  ++T+ L+ L G  L + ++  
Sbjct: 330 KNMFEALRDAILMTLFVIFLFLANIRMLIVSFFSIPVTCLVTIGLMWLFGFNLNIVTLTA 389

Query: 420 IVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           ++L +G+  D  +++ E I     +  + ++ +   G        F    T ++  + + 
Sbjct: 390 VILALGMLTDDAVVIVESIERHYFELKKDIWRATIDGTKEVMLADFSGTFTTVVMLLPIV 449

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
           F GG     ++  A+ + +++++S   +I+++  +  +I++    K+ 
Sbjct: 450 FIGGYVEKILKPLALVLIIALIVSYIVSITLLPMVTPYILKKTPDKNF 497



 Score = 74.0 bits (179), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 69/195 (35%), Gaps = 8/195 (4%)

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
           KK+   +        E +    ++ +       ++++   + +++         + +  +
Sbjct: 307 KKLYPQLNFEIADTQEWMIKLSNKNMFEALRDAILMTLFVIFLFLA---NIRMLIVSFFS 363

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + +    T+G   LFG   N+  + AV+  +G   +D VV+ + +      +        
Sbjct: 364 IPVTCLVTIGLMWLFGFNLNIVTLTAVILALGMLTDDAVVIVESI--ERHYFELKKDIWR 421

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIA 816
                  E +      +    + +LP+   GG    ++   A+ +   ++V+   SI + 
Sbjct: 422 ATIDGTKEVMLADFSGTFTTVVMLLPIVFIGGYVEKILKPLALVLIIALIVSYIVSITLL 481

Query: 817 APILLFIYDWRAKNA 831
             +  +I        
Sbjct: 482 PMVTPYILKKTPDKN 496



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/441 (9%), Positives = 123/441 (27%), Gaps = 24/441 (5%)

Query: 401  TLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
             +  +  +    +       VL  G       +  +    +    +     ++     ++
Sbjct: 592  IVYSMPYVLRVSSTIGSEPGVLSFGSGKLPQQIEIKIQFIDRFHRKETIWQIEEKLRESF 651

Query: 461  STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            S I       ++           A     I      +++          ++  + + K +
Sbjct: 652  SQIPGLRYVNVMDFGATPLSSIKATIDEMIYGKDPKVLNKLGD-----KLLSLMYKVKGL 706

Query: 521  KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
             S+  +           I                 +    +  +        ++    I+
Sbjct: 707  TSVSRSWYMDKKEYIFQIDSNKASLYGLTPLEIANYVGEYVKGIPVSSFVVPMENGMVIR 766

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD------------S 628
            + +  +    +  ++S     + G I    F   K+  V+      D            +
Sbjct: 767  VILPKDERGFVDQLKSIPIPTKKGFIPLSYFATFKSQNVQNVITHQDLLNVLDIQGYRAT 826

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               T +   V      +   +    +     K  +E   +    + I  I +   + I F
Sbjct: 827  APTTFLQMQVNPLEKSLKLPAGYGVSHEGEIKQMQESFSRLFKSLAIGIIILYFSLVIVF 886

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              + + +  +  + L +        + G    + +   ++ L G  VN+ +++ D +   
Sbjct: 887  GSFTYPISILAAIPLSVIGAAISLLITGKPQCMPSFMGMILLAGVIVNNSILLIDFI--- 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPMAVWGGSVIGSFAIPMAFG 804
             K         + I  SI       + T+       I +      G   +   A+    G
Sbjct: 944  QKARNEGRPLSEAILDSIKIRTRPVLMTAFGTSVGMIPIALGWALGLERLAPLAVVAIGG 1003

Query: 805  IVVAASSSIFIAAPILLFIYD 825
            +++    ++     ++ FI +
Sbjct: 1004 LIIGTFMTLVFVPVLVSFIEE 1024


>gi|299529154|ref|ZP_07042601.1| Co/Zn/Cd efflux pump protein CzcA [Comamonas testosteroni S44]
 gi|298722855|gb|EFI63765.1| Co/Zn/Cd efflux pump protein CzcA [Comamonas testosteroni S44]
          Length = 1029

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 87/653 (13%), Positives = 198/653 (30%), Gaps = 50/653 (7%)

Query: 54  SHLVLEVDE------DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF 107
           +++ ++V         + +  F+ +  +   + L          +   + ITL F D+  
Sbjct: 43  TNVQVQVATEAPGRSPEEIERFVTVPLEIAMTGLPGLAEMRSLNKSGLSIITLVFTDATD 102

Query: 108 KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
                  VT  L  V  ++       L   +T        + ++ D       +  +   
Sbjct: 103 VYFARQLVTERLIEVTPRMPEGIVPVLGPVSTGLGEVYQYTLDHPDDGKRELTQAELTER 162

Query: 168 RQRIDQ-----IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
           R   D      +       +       + Q     DP+RLR    +  ++       N +
Sbjct: 163 RTIQDWVARPLLRSIPGVAEINSQGGYVKQYQVLVDPARLRHYNLSVRQVVQAVADNNAN 222

Query: 223 KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
             G +      +       ++    +I  I L               V I  +       
Sbjct: 223 ASGGILPQVTEQYLIRGVGMIRTLDDIGNIVLKEQGGVPVYVRDVAKVQIDAEVRQGAII 282

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
                + +   + ++                          T     +     +      
Sbjct: 283 KGGYTEGVSGIVLMMR-----------------GGNAKEVVTRVKERVEEINSKGMLPGG 325

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
              +           +             LV++VLF+ +   +  L+   ++ +  + T 
Sbjct: 326 LQIVPYYDRTDLVDSALWTVGKVLIEGIFLVVVVLFIFLGDVRSSLIVVATLIITPLTTF 385

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE-----NRKNQSVFCSLDMGFS 457
            +++  G +  L S+ G+ + IGL VD+ ++V E +  +     N + + +   L     
Sbjct: 386 IMMNKYGISANLMSLGGLAIAIGLMVDATVVVVENVFHKLGQAGNSRGERIRTVLSATVE 445

Query: 458 RAYSTIFDSNITALIATVVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMI-FI 514
            A  TIF   I  L+   ++   G  G      A+T+ +++ IS+  ++ +   +   F+
Sbjct: 446 VATPTIFGIAIIILVFLPLMTLQGIEGKMFGPLALTIAMALAISLAVSLFLSPVLCSYFL 505

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR--------------FWGVGISILFSICS 560
                  +  I  L R +L     A    R                F  +G S + ++  
Sbjct: 506 KGGADHDTKLIGFLKRHYLRLLDGATARNRLTLAVAVALLIGSLGLFPFLGKSFMPTMKE 565

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             L         I     I++ + A + V       ++ S      S  +  G       
Sbjct: 566 GALTPQINRVPSISLDESIRMEMAAMKEVAQVPGVKSVVSKLGRGESPADPAGPNESDPI 625

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +   P     Q  + E +++++++I  +  + +  I           +  + V
Sbjct: 626 VLLDPESERTQDEIDEEIRQRLSKIPGVQIVLSQPISERVDEMVTGVRSQLAV 678



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 77/217 (35%), Gaps = 9/217 (4%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            G    +  +        A+  V  + ++              +IV      +L+   + 
Sbjct: 284 GGYTEGVSGIVLMMRGGNAKEVVTRVKERVEEINSKGMLPGGLQIVPYYDRTDLVDSALW 343

Query: 672 GVIISAI-AMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            V    I  + + + + F        +L  + TLI+    T      +GI  NL ++  +
Sbjct: 344 TVGKVLIEGIFLVVVVLFIFLGDVRSSLIVVATLIITPLTTFIMMNKYGISANLMSLGGL 403

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLP 785
              IG  V+  VVV + +   +     S   R   +  +  E    +++      +  LP
Sbjct: 404 AIAIGLMVDATVVVVENVFHKLGQAGNSRGERIRTVLSATVEVATPTIFGIAIIILVFLP 463

Query: 786 MAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPI 819
           +    G     F   A+ +A  + ++ + S+F++  +
Sbjct: 464 LMTLQGIEGKMFGPLALTIAMALAISLAVSLFLSPVL 500



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 694  LGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            L ++  L+L      G   LF  G   ++ A    + L G +V + VV+   +R   +L 
Sbjct: 891  LASLIILVLPFASIGGLIGLFVTGEYVSVPASVGFIALWGIAVLNGVVLVSSIR---QLR 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +   + + +   +     + T+  A + ++P       G  V    AI +  G++ +
Sbjct: 948  QDGMDVAEAVREGCTQRFRPVMMTATVALLGLVPFLFATGPGSEVQRPLAIVVIGGLITS 1007


>gi|317128214|ref|YP_004094496.1| protein-export membrane protein SecD [Bacillus cellulosilyticus DSM
           2522]
 gi|315473162|gb|ADU29765.1| protein-export membrane protein SecD [Bacillus cellulosilyticus DSM
           2522]
          Length = 437

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 106/375 (28%), Positives = 191/375 (50%), Gaps = 7/375 (1%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
              ++    +  ++  +  RID +G+SE  ++  G  RI +QL G  D    R+LL T A
Sbjct: 58  EGQEINQAVLSDTVTSLLARIDVLGVSEPNVRVEGDDRIRVQLAGVSDEQTARELLSTQA 117

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           ++SF  V  N        G   +       +   ++  ++   +    AN        + 
Sbjct: 118 RLSFRDVDDNLMLD----GSDLVEGGARQSFTELNQPNVT---VTIRDANLFGDVTSEIW 170

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
              F E     + +    +      +  D ++++AP + + + +   +I+G+FT+E A  
Sbjct: 171 PRDFPENRLVIWLDWEEGDTYAEEILKEDSKIVSAPTVGETLRTSNIEINGDFTLEEANQ 230

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +L AG+LP++L  +   +VGA LG  S+ +   A   G+ LI  +M+  Y   G VA
Sbjct: 231 LAGILNAGALPVELEELYANSVGASLGERSMDQAVFAGFVGIALIFAYMLFYYRFMGAVA 290

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ + + + L + + + A LTLP IA ++LG+G+AVD+NI+  ERI++E R  ++V  
Sbjct: 291 VVTLSVYIYIVLVVFNWMNAVLTLPGIAALILGVGMAVDANIITYERIKDEIRSGKTVMS 350

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +   G  R+ STI D+NIT ++A  VLF+FG  AV+GFA+ + +SI+ S  T++   R +
Sbjct: 351 AFKAGSRRSLSTILDANITTVLAAAVLFYFGTSAVQGFAVMLIVSIVTSFLTSVFGSRLL 410

Query: 511 MIFIIRYKKMKSIDI 525
           +   +  + +     
Sbjct: 411 LGLWVNSRALNGKPR 425



 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 74/178 (41%), Gaps = 4/178 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             VG  +    + + +    +    +  Y+   +++     A+ TL + I   L  F   
Sbjct: 250 NSVGASLGERSMDQAVFAGFVGIALIFAYMLFYYRF-MGAVAVVTLSVYIYIVLVVFNWM 308

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                L  +AA++  +G +V+  ++ Y+R++  ++   +  +           +L   + 
Sbjct: 309 NAVLTLPGIAALILGVGMAVDANIITYERIKDEIR---SGKTVMSAFKAGSRRSLSTILD 365

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++   ++   +  +G S +  FA+ +   IV +  +S+F +  +L    + RA N +
Sbjct: 366 ANITTVLAAAVLFYFGTSAVQGFAVMLIVSIVTSFLTSVFGSRLLLGLWVNSRALNGK 423



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 15/93 (16%), Positives = 38/93 (40%), Gaps = 5/93 (5%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQN 96
             I+LGLDL+GG  ++ E        +     L      L + +   G+   ++R +  +
Sbjct: 35  EEINLGLDLQGGFEVLYEAQPINEGQEINQAVLSDTVTSLLARIDVLGVSEPNVRVEGDD 94

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +I +  A    ++   + ++   +     ++ +
Sbjct: 95  RIRVQLAGVSDEQTARELLSTQARLSFRDVDDN 127


>gi|281599876|gb|ADA72860.1| putative inner membrane component for iron transport [Shigella
           flexneri 2002017]
 gi|332763850|gb|EGJ94088.1| cation efflux system protein cusA [Shigella flexneri K-671]
 gi|333021866|gb|EGK41114.1| cation efflux system protein cusA [Shigella flexneri K-304]
          Length = 1047

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPKMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V    + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCAPFLWHVRSALVAIISLPLGLCIAFIVMPFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   ++              N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKQLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 95/288 (32%), Gaps = 16/288 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI--LLFIYDWRAKN 830
                 G  V+   A PM  G++ A   S+FI      L++++  R +N
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRN 1047


>gi|160900195|ref|YP_001565777.1| CzcA family heavy metal efflux protein [Delftia acidovorans SPH-1]
 gi|160365779|gb|ABX37392.1| heavy metal efflux pump, CzcA family [Delftia acidovorans SPH-1]
          Length = 1029

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 95/700 (13%), Positives = 212/700 (30%), Gaps = 70/700 (10%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE---- 62
           +++L  ++C  GL  A+        +D FP                 +++ ++V      
Sbjct: 16  VIVLSLVLCGFGLRAAM-----NLSVDAFPDV---------------TNVQVQVATEAPG 55

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +  F+ +  +   + +          +   + ITL F D+         VT  L 
Sbjct: 56  RSPEEIERFVTVPLEIAMTGMPGLVEMRSLNKSGLSIITLVFTDTTDVYFARQLVTERLM 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ-----IG 175
            V  ++       L   +T        + ++ D        + +   R   D      + 
Sbjct: 116 EVTPRMPEGIIPVLGPVSTGLGEVYQYTLDHPDDGKRALTPEELTERRTIQDWVARPLLR 175

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                 +       + Q   E DP RLR    +   +       N +  G +      + 
Sbjct: 176 SIPGVAEINSQGGYVKQYQVEVDPGRLRHYGLSVRHVVQAIADNNANASGGILPQVTEQY 235

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                 L++   +I  I L               V +  +            + +   + 
Sbjct: 236 LIRAVGLIQSLEDIGNIVLKQDGGVPVFVRDVAEVQLGQEVRQGAIIKGGYTEGVSGIVL 295

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
           ++                          T     +     +         +         
Sbjct: 296 MMR-----------------GGNAKEVVTRVKERVQEINSKGMLPGGLQIVPYYDRTDLV 338

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +             LV++VLF+ +   +  L+   ++ +  + T  +++  G +  L 
Sbjct: 339 DSALWTVGKVLIEGILLVVVVLFIFLGDVRSSLIVVATLIITPLTTFIMMNRWGISANLM 398

Query: 416 SIAGIVLGIGLAVDSNILVNERIREE-----NRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           S+ G+ + IGL VD+ ++V E +  +     +     V   L      A  TIF   I  
Sbjct: 399 SLGGLAIAIGLMVDATVVVVENVFHKLGQAGDSMGARVRTVLSATTEVATPTIFGIAIII 458

Query: 471 LIATVVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINP 527
           L+   ++   G  G      A+T+ +S+ +S+  ++ +   +   F+       +  I  
Sbjct: 459 LVFLPLMTLQGIEGKMFGPLALTIAISLAVSLAVSLFLSPVLCSYFLKGGADHDTRLIAF 518

Query: 528 LSRFFLIPDCIAIQFMRAR--------------FWGVGISILFSICSICLLFTHGLNYGI 573
           L R +L    +A    RA               F  +G S + ++    L         I
Sbjct: 519 LKRHYLRLLDLATARNRATLAVAVALLLGSLGLFPLLGKSFMPTMKEGALTPQINRVPSI 578

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                I++ + A + V       ++ S      S  +  G       +   P     Q  
Sbjct: 579 SLDESIRMEMAAMKAVAEVPGVLSVVSKLGRGESPADPAGPNESDPIVLLDPESDRTQDE 638

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           + E ++++++ I  +  + +  I           +  + +
Sbjct: 639 IDEDIRQRLSSIPGVQIVLSQPISERVDEMVTGVRSQLAI 678



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/249 (17%), Positives = 88/249 (35%), Gaps = 10/249 (4%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +  +  V + V       L           G     V              V+  VK+
Sbjct: 252 IVLKQDGGVPVFVRDVAEVQLGQEVRQGAIIKGGYTEGVSGIVLMMRGGNAKEVVTRVKE 311

Query: 641 KITEIVPLSTIQNTEIVGPKIS-RELIRKGIVGVIISAI-AMLIYIWIRF----KWYFAL 694
           ++ EI     +     + P     +L+   +  V    I  +L+ + + F        +L
Sbjct: 312 RVQEINSKGMLPGGLQIVPYYDRTDLVDSALWTVGKVLIEGILLVVVVLFIFLGDVRSSL 371

Query: 695 GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             + TLI+    T      +GI  NL ++  +   IG  V+  VVV + +   +     S
Sbjct: 372 IVVATLIITPLTTFIMMNRWGISANLMSLGGLAIAIGLMVDATVVVVENVFHKLGQAGDS 431

Query: 755 ISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAAS 810
           +  R   +  +  E    +++      +  LP+    G     F   A+ +A  + V+ +
Sbjct: 432 MGARVRTVLSATTEVATPTIFGIAIIILVFLPLMTLQGIEGKMFGPLALTIAISLAVSLA 491

Query: 811 SSIFIAAPI 819
            S+F++  +
Sbjct: 492 VSLFLSPVL 500



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/229 (14%), Positives = 76/229 (33%), Gaps = 7/229 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +  +    + +       L  G        G++  +V    +  D       ++    K 
Sbjct: 783  LTTSTGAQVPLNSVARIELVDGPAQISREGGKRRVVVGANVEGRDLGGFVTEVQQRIDKE 842

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             ++      +               + IV + I AI  L+++         L  +     
Sbjct: 843  VQLPDGYYFKYGGQFENMERAMGTLQVIVPLTIVAIFFLLFVLFNSVKLAGLIILVLPFA 902

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   +G F + G   ++ A    + L G +V + VV+   +R   KL    +   + + 
Sbjct: 903  SIGGLIGLF-VTGEYVSVPASVGFIALWGIAVLNGVVLVTCIR---KLREDGMDVAEAVR 958

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
            +   +     + T+  A + ++P       G  V    AI +  G++ +
Sbjct: 959  EGCVQRFRPVMMTATVALLGLVPFLFATGPGSEVQRPLAIVVIGGLISS 1007


>gi|289643742|ref|ZP_06475852.1| MMPL domain protein [Frankia symbiont of Datisca glomerata]
 gi|289506466|gb|EFD27455.1| MMPL domain protein [Frankia symbiont of Datisca glomerata]
          Length = 749

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 82/615 (13%), Positives = 177/615 (28%), Gaps = 66/615 (10%)

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
             +  G +   +  +  +  P         +   V      +           E      
Sbjct: 84  LTEAAGRQAVTDAVQKIVKAPQVAQASDPFVRGGVSQDGRTAYTQVTYKVQPGEITDEAR 143

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
             L A +   +   +     G  +        T  I   +  +VL +             
Sbjct: 144 ESLFAAAGVARDAGIGVEFGGTAVEGQPEQSATEVIGLVVAAVVLVITFGSLVAAGFPLL 203

Query: 393 SIFLNVILTLALLSLLGATLTLPS---IAGIVLGIGLAVDSNILVNERIREENRKNQSVF 449
           +  L+V++ +  + +    + + S      ++LG+ + VD  + +  R R E        
Sbjct: 204 TALLSVMIGIGCIQIATGFINVSSSTPTLALMLGLAVGVDYALFITSRYRHELSLGSDGE 263

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            +       A S +  + +T +IA   L   G   +    +    ++ +++  A++++ A
Sbjct: 264 QAAGRAVGTAGSAVVFAGLTVVIALAALSVVGIPFLTSMGLAAAGTVAVAVIVALTLLPA 323

Query: 510 MMIFIIRYKKMKSIDINPLSRF------FLIPDCIAIQFMRARFWGVGIS---------- 553
           +  F  R      I                +    A   +R R   V +S          
Sbjct: 324 LFGFAGRRLLGGRIPGLRARDPEGDGGGPTVGQRWARLIVRRRAIAVVLSVLALGLLAVP 383

Query: 554 -------------ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD-------LSV 593
                                         +G  F G + L V  +   D       +S 
Sbjct: 384 AADLRLGLPTDATAAPDSTQRRAYDQLTAGFGPGFNGPLLLVVDGSASADPRTAVGEVSR 443

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
             + L  +        N  G    L           A   ++  ++ +   I   +    
Sbjct: 444 TVTALPGVAAVTAPTFNPAGNTATLSVTPTSGPSEAATEDLVHTIRGQAAAIRAATGAST 503

Query: 654 TEIVGPKISRELIRKG------IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                  I+ ++  K        + V++    +L+ +  R      L A    +L +  T
Sbjct: 504 AITGETAINIDVSEKLSDALLPYLAVVVGLAFVLLVLVFR-SILVPLKATAGFLLSVVAT 562

Query: 708 LG-FFALFGI--------------EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            G   A+F                  ++  +  +  L G +++ +V +  RMR+      
Sbjct: 563 FGAVVAVFQWGWLMDVLGVATTGPIVSILPIFLIGVLFGLAMDYEVFLVTRMREEF---V 619

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS-VIGSFAIPMAFGIVVAASS 811
             +   D +         R V  +    ISV    +     +I S    ++FG++V A  
Sbjct: 620 HGLEPDDAVVTGFRH-GARVVTAAAIIMISVFAGFILSDQAIIQSIGFALSFGVLVDAFV 678

Query: 812 SIFIAAPILLFIYDW 826
                 P ++ +   
Sbjct: 679 VRMTLVPAVMSLAGR 693


>gi|300859365|ref|YP_003784348.1| RND superfamily drug exporter [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300686819|gb|ADK29741.1| drug exporter of the RND superfamily [Corynebacterium
           pseudotuberculosis FRC41]
 gi|302207048|gb|ADL11390.1| Drug exporter of the RND superfamily [Corynebacterium
           pseudotuberculosis C231]
 gi|302331608|gb|ADL21802.1| Drug exporter of the RND superfamily [Corynebacterium
           pseudotuberculosis 1002]
 gi|308277301|gb|ADO27200.1| Drug exporter of the RND superfamily [Corynebacterium
           pseudotuberculosis I19]
          Length = 874

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 90/658 (13%), Positives = 188/658 (28%), Gaps = 48/658 (7%)

Query: 213 SFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDI 272
            F   L     +              N        + SG  +   ++      +K   +I
Sbjct: 30  IFGIRLAERMSQEGWDDPGSSSTQAANIEQEVFGRDNSGDVILLFSSEDGIAKNKNFDEI 89

Query: 273 SFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILA 332
                  +        ++           +        A  S +           A    
Sbjct: 90  KRYLGDLKALHPDNIADVTSYFDNRNAQLLSKDGKTAFAAVSLRGDHEQTLKDFRAIKGN 149

Query: 333 AMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADF 392
              +   + I++          D G     K    +   LV I+L  +        +   
Sbjct: 150 LKPQFDGVTIQVAGATAVADALDSGMAGDIKRAEIVALPLVAILLLFVFGSVVAAFMPLI 209

Query: 393 SIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVF 449
              L+++ +L +LS+L     +   A     +LG+GLA+D  + +  R REE  + + + 
Sbjct: 210 VGILSILGSLGVLSILAGFTQVNVFAQSVVTLLGLGLAIDYGLFMVSRFREEMDQGRDIA 269

Query: 450 CSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRA 509
            ++ +  S A  T+  S     +A   L  F    ++  A     ++ ++   +I+++ +
Sbjct: 270 DAVRITTSTAGKTVVFSAAMVAVALSGLLVFPQAFLKSVAYGAISAVGLAALLSITVLPS 329

Query: 510 MMIFIIRYKKMKSIDINPLSRFFL--IPDCIAIQFMRARFWGVGISILFSICSICL---- 563
           +   +       ++     S   L          +   R   V ISI+  + ++ +    
Sbjct: 330 IFAMLGTKIDKWTLRRTNRSARTLAGTWWYKLPAWAMKRSKTVVISIVVLLIALTVPLAG 389

Query: 564 --------------------LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
                                 T    +       I+L V       L  V     ++  
Sbjct: 390 ITFGGINETYLPPNSDVRKAQSTFDKEFPAFRTEPIKLVVSNATNDQLIKVYQQANTITG 449

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
               F+     K+    L     D      V++ ++           I  T  +  +   
Sbjct: 450 LTDRFKPSTATKDGTTVLSAGIADRKDNESVVKQLRAIEVPEGVNVHIGGTPAMEVESIE 509

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF----------A 712
            L  K     I   +A  I + + F        AI   IL +  TLG             
Sbjct: 510 ALFDKLPWMAIYIVLATFILMSLVFGSMILPAKAIIMTILGMGATLGILTSMFVDGVGSG 569

Query: 713 LFGIE----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
           LF        +   V  +  + G S + +V +  RM +         S  + I      T
Sbjct: 570 LFNFSAGPLMSPVLVLIMAIVYGLSTDYEVFLVSRMVE---ARDNGESTDEAIKYGTAHT 626

Query: 769 LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYD 825
            G     ++   +           ++   A  M   ++       + +   ++  + +
Sbjct: 627 GGIITAAALIMIVVCGAFGFSEIVMMKYIAFGMVVALLFDATIIRMLLVPAVMHLLRE 684



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 76/244 (31%), Gaps = 9/244 (3%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
              +          +    + DG+  F         +   +         K         
Sbjct: 101 PDNIADVTSYFDNRNAQLLSKDGKTAFAAVSLRGDHEQTLKDFRAIKGNLKPQFDGVTIQ 160

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLG 709
           +     V   +   +        I++   + I +   F     A   +   IL I  +LG
Sbjct: 161 VAGATAVADALDSGMAGDIKRAEIVALPLVAILLLFVFGSVVAAFMPLIVGILSILGSLG 220

Query: 710 FFALFGIEFNLTAVAA--VLTLIGYS--VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             ++    F    V A  V+TL+G    ++  + +  R R+ M          D +  + 
Sbjct: 221 VLSIL-AGFTQVNVFAQSVVTLLGLGLAIDYGLFMVSRFREEM---DQGRDIADAVRITT 276

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +      V+++    +++  + V+  + + S A      + +AA  SI +   I   +  
Sbjct: 277 STAGKTVVFSAAMVAVALSGLLVFPQAFLKSVAYGAISAVGLAALLSITVLPSIFAMLGT 336

Query: 826 WRAK 829
              K
Sbjct: 337 KIDK 340


>gi|163748800|ref|ZP_02156052.1| heavy metal efflux pump, CzcA family protein [Shewanella benthica
           KT99]
 gi|161331574|gb|EDQ02379.1| heavy metal efflux pump, CzcA family protein [Shewanella benthica
           KT99]
          Length = 1043

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/598 (11%), Positives = 163/598 (27%), Gaps = 45/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++I+  MI   G+       L  + LD  P       I                 
Sbjct: 11  RQRLMVLIVTIMITVWGV-----QELRNTPLDALPDLSDVQVI---------IKTSFPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APKLVEEQVTYPLSTAMLAVPGAKTVRGYSFFGDSYVYVIFEDGTDIYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    + +L    +                     +           ++       
Sbjct: 117 VGSRLPQGAQPSLGPDASGVGWIYEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVPGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      + +      +P +L       A +       N+   G +  +         + 
Sbjct: 176 EVATVGGMELTYQIVIEPDKLAIYKLDIAAIKDAISKSNSEVGGSVIEMAEAEYMVRAKG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +   I L   + +  P   K V  +       R   E+  +             
Sbjct: 236 YLQTLDDFREIPLGVTSPSGTPLLLKDVATVRKGPASRRGIAELDGE------------- 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +   TI+        L+ G       I           S   
Sbjct: 283 ----GEVVGGIIVMRYGENALATIKAVKKKLEQLKVGLPEGVEIIPTYDRSKLIESSVEN 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + +++ +  LVA  ++ L +++   +++ +G T  + S+ GI 
Sbjct: 339 LFHKVLEEMFVVGLVCLLFLMHARSTLVAVITLPLAILIAFIVMNKMGVTANIMSLGGIA 398

Query: 422 LGIGLAVDSNILVNERIREENRK-------------NQSVFCSLDMGFSRAYSTIFDSNI 468
           + IG  VD  I++ E + +                 +  +     +    A  +      
Sbjct: 399 IAIGAVVDGAIVMIENLHKHLEHFEQDNNRRPNTKEHWKLVTEASVEVGPALFSSLLIIT 458

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            + +    L    G      A T   ++  +   +I++V  +M F IR K  K       
Sbjct: 459 LSFMPVFALEAQEGRLFGPLAYTKTFTMAAAALLSITLVPVLMGFFIRGKIPKETSNPLS 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                +        ++     + ++++  + +   +   G  +  +   G  L +   
Sbjct: 519 RCLIALYKPALTLVLKFPKMTLVVALITLMSAWYPMSQLGSEFMPELDEGDLLYMPTT 576



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/233 (13%), Positives = 77/233 (33%), Gaps = 13/233 (5%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-- 667
                E   L+   +   +  +    +E  K  +   + +    +    G     + +   
Sbjct: 812  MLKSENGRLISWVFIDIEGTSIGEYIEQAKSALDSELTVPPRYSYVFAGQYEYMQRVDEK 871

Query: 668  -KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             K ++ + +  I +++ +        ++  + +L   +  +           ++     +
Sbjct: 872  LKKVIPMALGVIFIMLMMTFGSTVQASMI-MFSLPFALVGSTWLLYALDFNMSVAVAVGM 930

Query: 727  LTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            + L G +    VV+        + RK    Y      ++ + +     +     T    F
Sbjct: 931  IALAGVAAEFGVVMLVYLNNAIKHRKEKGKYEAVSDLKEALIEGAVMRIRPKAMTVATIF 990

Query: 781  ISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +LP+      G  V+   A PM  G+V A   S+F+   + L +Y  +   
Sbjct: 991  FGLLPIMWGTGAGNDVMQKIAAPMVGGMVTAPLLSLFVLPALYLLVYSRKLNK 1043



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 15/229 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A  + LE +K  + E V +    +   +       L  K +  
Sbjct: 287 GGIIVMRYGENALATIKAVKKKLEQLKVGLPEGVEIIPTYDRSKLIESSVENLFHKVLEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             ++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MFVVGLVCLLFLMHAR----STLVAVITLPLAILIAFIVMNKMGVTANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMR---KNMKLYTTSISFR----DLIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + +    ++ +              L+ ++  E       + +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEHFEQDNNRRPNTKEHWKLVTEASVEVGPALFSSLLIITLSFM 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           P+          F   A    F +  AA  SI +   ++ F    +   
Sbjct: 463 PVFALEAQEGRLFGPLAYTKTFTMAAAALLSITLVPVLMGFFIRGKIPK 511


>gi|288555356|ref|YP_003427291.1| preprotein translocase subunit SecD [Bacillus pseudofirmus OF4]
 gi|288546516|gb|ADC50399.1| preprotein translocase subunit SecD [Bacillus pseudofirmus OF4]
          Length = 434

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 116/379 (30%), Positives = 188/379 (49%), Gaps = 5/379 (1%)

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
            N  D +   A+  ++  + QR++ +G+SE  IQ  G  RI +QL G  D    R LL T
Sbjct: 51  ANEGDVIDQQALSATVGALNQRVNVLGVSEPNIQIEGDDRIRVQLAGVDDQQTARDLLST 110

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
            A ++F  V       G          S  +Q   E  V ++          F+  T + 
Sbjct: 111 EANLTFRDVNDEVLLDGSDLQQNGASSSFKDQ-TNEPIVTLT----LRDARLFEDITREI 165

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
                 + +           +  +   +  D + L+A  + Q IPS    I GNFT+E  
Sbjct: 166 SSRPPGENLLVIWLDFEEGVDSYEAEMMSEDPKFLSAASVRQVIPSRDVMIEGNFTVEET 225

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             +A +L AGSLP++L  +   +VGA LG  ++ K   A   G+ LI L+M+  Y   G+
Sbjct: 226 RFIAEVLNAGSLPVQLEEMYSNSVGASLGEQAMEKTIYAGFIGIALIFLYMLFYYRFMGV 285

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +A  ++ + + L L + + + A LTLP IA ++LG+G+AVD+NI+  ERI+EE R  +S+
Sbjct: 286 IAVITLSMYIYLVLLVFNWMNAILTLPGIAALILGVGMAVDANIITYERIKEEIRSGKSI 345

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             +   G  R+ STI D+NIT ++A  VLF +G  +V+GFA+ + +SIL S  TA+   R
Sbjct: 346 MSAFKAGSRRSLSTILDANITTILAAGVLFAYGTSSVQGFAVMLIVSILTSFVTAVYGSR 405

Query: 509 AMMIFIIRYKKMKSIDINP 527
            ++   +  + +       
Sbjct: 406 LLLGLWVNSRALNKKPRMF 424



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 92/253 (36%), Gaps = 8/253 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +     VD        E  +    +       +    R     G+   +        
Sbjct: 176 VIWLDFEEGVDSYEAEMMSEDPKFLSAASVR----QVIPSRDVMIEGNFTVEETRFIAEV 231

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                +        +  VG  +  + + K I    I    + +Y+   +++   + A+ T
Sbjct: 232 LNAGSLPVQLEEMYSNSVGASLGEQAMEKTIYAGFIGIALIFLYMLFYYRF-MGVIAVIT 290

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           L + I   L  F        L  +AA++  +G +V+  ++ Y+R+++ ++   +  S   
Sbjct: 291 LSMYIYLVLLVFNWMNAILTLPGIAALILGVGMAVDANIITYERIKEEIR---SGKSIMS 347

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
                   +L   +  ++   ++   +  +G S +  FA+ +   I+ +  ++++ +  +
Sbjct: 348 AFKAGSRRSLSTILDANITTILAAGVLFAYGTSSVQGFAVMLIVSILTSFVTAVYGSRLL 407

Query: 820 LLFIYDWRAKNAR 832
           L    + RA N +
Sbjct: 408 LGLWVNSRALNKK 420



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 47/123 (38%), Gaps = 11/123 (8%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD----FVNG 68
           +I    +++     + Q+++           I LGLDL+GG  ++ +V+  +        
Sbjct: 7   IIAFFLIVLIFGGLISQTVMGI------TKEIKLGLDLQGGFEILYQVNPANEGDVIDQQ 60

Query: 69  FLQMYSDELRSFLKKEGIGVFSMR-QIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
            L      L   +   G+   +++ +  ++I +  A    ++   D ++         +N
Sbjct: 61  ALSATVGALNQRVNVLGVSEPNIQIEGDDRIRVQLAGVDDQQTARDLLSTEANLTFRDVN 120

Query: 128 VDP 130
            + 
Sbjct: 121 DEV 123


>gi|241764953|ref|ZP_04762952.1| heavy metal efflux pump, CzcA family [Acidovorax delafieldii 2AN]
 gi|241365472|gb|EER60244.1| heavy metal efflux pump, CzcA family [Acidovorax delafieldii 2AN]
          Length = 1040

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 80/663 (12%), Positives = 184/663 (27%), Gaps = 50/663 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----VNGFLQMYSDELRSFLK 82
             Q  +D FP   P               + +  +        V   L    + + + L 
Sbjct: 31  FRQVPVDAFPDVTP-------------IQVSIYTESPGLAAEDVEKLLTTPIEGVMAGLP 77

Query: 83  KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                        + + + F D+         V   LQ V  +L     + +L   +   
Sbjct: 78  GVEEVRSVSLFGLSYVAVYFKDNVDIYFARRLVGEKLQDVKGRLPQGYGEPVLGPNSSGL 137

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
             +             A++            +  +      +       Q   + DP +L
Sbjct: 138 GQVFWYTIESADKKLSAMDLRTLHDWTVRLILRTAPGVDDVVSWGGDQKQYQVQIDPRQL 197

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            +   +  ++       N    G    +   +       LV +  +I+GI +        
Sbjct: 198 IKYGLSFKQVMERLTANNKQVGGQSINLGSEQYLVRGLGLVSNTKDIAGIVVA------- 250

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
                        E      +      + +  A                I   +   +  
Sbjct: 251 -------------ERNGAPIYVRDVAQVKEAPAPRFGAVTKDGKEAVLGIALARVNENAQ 297

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
             ++      A+ +A        +           +    + +    A LV ++LF+ + 
Sbjct: 298 AVVDAVKAKLAVAQAALPKGVTLVPNYDRAELVQKALKTAESSLVEGAILVAVILFLFLG 357

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             +  +V   ++ L +++   L+   G +  L S+AG+ +G G+ VD  +++ E      
Sbjct: 358 EFRSAIVVIVTLPLAMLIAFILMQQFGVSANLMSLAGLAIGTGMMVDGAVVLVENSFRLL 417

Query: 443 RKNQSVFCSLDMG---FSRAYSTI------FDSNITALIATVVLFFFGGGAVRGFAITMG 493
              +     ++        A   I          I   +    L    G   +  A+T+ 
Sbjct: 418 SHARESGKPINKTHLILEAAREVINPIAFAIIIIIVVFLPLFSLTGLEGKLFKPMALTIT 477

Query: 494 LSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS 553
            ++  S+  ++++V  +   I++ K+ K      + R+        + +   R   V  S
Sbjct: 478 FAMAGSLLLSMTLVPVLAALILKPKEEKD---TFVVRWAKKAYLPLLDWALERKKLVIGS 534

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
            L  + +   LF       +       +          S+  S   S  + D   + F  
Sbjct: 535 ALALLVASLALFPFLGKEFMPTLQEGTIQFRVTNIPSASLDESIRVSKVVSDELHKQFPQ 594

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             + L  +    G        +E +                  +  ++   L +     V
Sbjct: 595 VVSVLATIGRAEGGETTDVNYME-LNLATKPQSEWPEKIPYTKLASEMQEALEKVVPTAV 653

Query: 674 IIS 676
             +
Sbjct: 654 FGA 656



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 81/237 (34%), Gaps = 11/237 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +D      + + +     +   +     L  G    +    ++  ++++  +  D     
Sbjct: 772  LDPTTIGAIPIRSADGALIPFAQVASIELDEGYSFIRRESLQRYSVLQMDVKGRDVDGFV 831

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +  + + K+  ++     ++       +         IV + I  I ML+Y         
Sbjct: 832  KDADAMIKQRVQLPEGYYLEWGGAFENQQRAMARLAVIVPLTIGLIFMLLYTAFN-SVRH 890

Query: 693  ALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            A   I   +       G   LF  G   ++ +    + + G ++ + +V+ + +    + 
Sbjct: 891  ATI-IIANV-PFAVIGGIVGLFVSGQYLSVPSAIGFIAVFGVAMLNGIVMVEFLNDQRRQ 948

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                +S RD + +  +  L   + T+  A + ++PM +    G       A  +  G
Sbjct: 949  ---GLSVRDAVRRGASLRLRPVLMTASVAILGLIPMLLSTGVGAETQRPLATVVVGG 1002



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 84/259 (32%), Gaps = 12/259 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+A R      VR   +  +     F     +    V        +     V++ VK K+
Sbjct: 248 VVAERNGAPIYVRDVAQVKEAPAPRFGAVTKDGKEAVLGIALARVNENAQAVVDAVKAKL 307

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG----VIISAIAMLIYIWIRFKWYFALGAIT 698
                      T +     +  + +         V  + +  +I      ++  A+  I 
Sbjct: 308 AVAQAALPKGVTLVPNYDRAELVQKALKTAESSLVEGAILVAVILFLFLGEFRSAIVVIV 367

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-------MRKNMKLY 751
           TL L +         FG+  NL ++A +    G  V+  VV+ +         R++ K  
Sbjct: 368 TLPLAMLIAFILMQQFGVSANLMSLAGLAIGTGMMVDGAVVLVENSFRLLSHARESGKPI 427

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
             +    +   + IN      +   +  F+ +  +    G +    A+ + F +  +   
Sbjct: 428 NKTHLILEAAREVINPIAFAIII-IIVVFLPLFSLTGLEGKLFKPMALTITFAMAGSLLL 486

Query: 812 SIFIAAPILLFIYDWRAKN 830
           S+ +   +   I   + + 
Sbjct: 487 SMTLVPVLAALILKPKEEK 505


>gi|84387463|ref|ZP_00990482.1| AcrB/AcrD/AcrF family protein [Vibrio splendidus 12B01]
 gi|84377716|gb|EAP94580.1| AcrB/AcrD/AcrF family protein [Vibrio splendidus 12B01]
          Length = 1025

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 66/687 (9%), Positives = 174/687 (25%), Gaps = 54/687 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++  +  +L   I  +GLL        +  +  FP     +               +   
Sbjct: 9   KHPVFASVLSITIVLLGLLS-----FQKLSIQYFPEHKTPSA-------------TVTAA 50

Query: 62  EDDFVNGFLQMYSDE----LRSFLKKEGIGVFSMRQIQNKITLSFADSRF---KENIADK 114
            +     F+     +      + L          ++    + + F D        ++ + 
Sbjct: 51  INGASAEFMSRNVADKLITAATGLDSVKTMTTDCQEGTCNLKIMFEDDINDVEYTSLMNN 110

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   ++ +         K  +   +            ++       +    I +Q + Q 
Sbjct: 111 LRSSVEAIGDFPPSMTDKPTVTDDSSDTSMPSNIITFVNTGKMSKQDMYDYISQQVVPQF 170

Query: 175 GISESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
              +               +     P R+  L  + + +       N +        +  
Sbjct: 171 KHIQGVGGIWGPYGGSEKAVRVWLQPDRMMALNMSASDVVGTLSSYNATFTAGTIKGQVR 230

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             S                       N           +   + G         +     
Sbjct: 231 DFSI-------------------NPVNQVTSVDDVRDLVVRVDNGKIIRVGDIAEVKMGE 271

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            ++      +   +            +             +++          +      
Sbjct: 272 ESLTPSILRVDDNLAMSIQVLPLKSENPVTVANKVKKQIDVIQPQLPEGIEMKMVYNQAD 331

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +      T      LV  V+ + +   +   +   +I + VI   A++ LLG ++ 
Sbjct: 332 FIKTAIDEGFMTLVEAIVLVSAVVVLFLGSVRVASIPIITIPVCVIGVFAVMHLLGFSIN 391

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + +I  I+L IGL VD  I+V E       + ++ F +   G       +    +T  + 
Sbjct: 392 VLTILAIILAIGLVVDDAIVVAENCYRHIEEGETPFNAAIKGCREIVFPVIAMTLTLAVV 451

Query: 474 TVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-----KKMKSIDI 525
            + +    G      R FA T+  +++IS F A+++   M  ++++      +  K +D 
Sbjct: 452 YLPIGLMSGLTADLFRQFAFTLAAAVIISGFVALTLSPMMCAYLMKPVTKPARWYKKVDA 511

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                  L    +   F R         +L ++  + +     +    +  G +++    
Sbjct: 512 KLNVLSDLYTKELGKWFERKTLMSSIALVLIALSVLAVWKMPQVLLPTEDTGFVEVTSTP 571

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              V       +                     +         +      +    ++   
Sbjct: 572 PTGVGR-QYHLDNNEQLNSVFKGDRSVEANLSYIEGTPTNHVLLKSWGERDQSADELVNE 630

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVG 672
                  +    G            + 
Sbjct: 631 FIAKAQSSVSAYGMSFKVRSADNLSIA 657



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 94/286 (32%), Gaps = 10/286 (3%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                  +     + +N          L V  +    + V       +    ++      
Sbjct: 222 AGTIKGQVRDFSINPVNQVTSVDDVRDLVVRVDNGKIIRVGDIAEVKMGEESLTPSILRV 281

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVK---KKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
           + N  + +Q  P  S     V   VK     I   +P               +  I +G 
Sbjct: 282 DDNLAMSIQVLPLKSENPVTVANKVKKQIDVIQPQLPEGIEMKMVYNQADFIKTAIDEGF 341

Query: 671 VGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           + ++ + + +  + +        A   I T+ + +        L G   N+  + A++  
Sbjct: 342 MTLVEAIVLVSAVVVLFLGSVRVASIPIITIPVCVIGVFAVMHLLGFSINVLTILAIILA 401

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           IG  V+D +VV +      +      +  +   K   E +   +  ++   +  LP+ + 
Sbjct: 402 IGLVVDDAIVVAENC---YRHIEEGETPFNAAIKGCREIVFPVIAMTLTLAVVYLPIGLM 458

Query: 790 GG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G    +   FA  +A  ++++   ++ ++  +  ++     K AR
Sbjct: 459 SGLTADLFRQFAFTLAAAVIISGFVALTLSPMMCAYLMKPVTKPAR 504



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 102/287 (35%), Gaps = 10/287 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       +T+ +   ++ K      VL    VD    +    S  +     
Sbjct: 730  TFLGSVKAADLQADDGYTYPIQVQVNRKDLGDFKVLDKLYVDSQSGQRLPLSQFVSIKQV 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
             +    K F+ +   +    +        VK  I + VP             I ++L+  
Sbjct: 790  TSESNFKTFMGKDSAEITADLMPGYTASDVKAYIDDTVPSLLKPAQSYEFNGIVKDLVDS 849

Query: 669  GIVG---VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                    +++ I + + +  +F+ +   +  + T+ L I   +   ++FG   N+ +  
Sbjct: 850  TAGAQVLFVLALIFIFLILAAQFESFVDPMIILLTVPLCIVGAILTLSVFGQSLNIYSKI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +   +      +  S ++    S    L   + TS+   +  L
Sbjct: 910  GLLTLVGLVTKHGILLVEFANE---KRKSGTSAKEAAISSARSRLRPILMTSLTMILGSL 966

Query: 785  PMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            P+A+  G   +   +  + +  G+      S+F+     + + + + 
Sbjct: 967  PLALADGPGSLGRINIGLVLVGGLTAGTFFSLFLVPVAYVGMANLKQ 1013


>gi|150024970|ref|YP_001295796.1| multidrug resistance protein precursor AcrB/AcrD/AcrF family
           protein [Flavobacterium psychrophilum JIP02/86]
 gi|149771511|emb|CAL42980.1| Probable multidrug resistance protein precursor. AcrB/AcrD/AcrF
           family protein [Flavobacterium psychrophilum JIP02/86]
          Length = 1447

 Score =  126 bits (316), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 75/672 (11%), Positives = 191/672 (28%), Gaps = 43/672 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF--VN 67
           L   +  + L+        +  +D  P                   ++  V       + 
Sbjct: 14  LIIGLFTLLLMGYGSYQFTKLPIDAVPDITNNQ-----------VQVITSVPSLGATDIE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    ++  S +          R   + +T+ F D+        +VT  L  V  ++ 
Sbjct: 63  RLITFPIEQANSNIPGLKEIRSFSRFGLSVVTIVFDDATDVYWARQQVTERLSTVKDQIP 122

Query: 128 VDPKKNL---LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                 +   + T   +    V+   N  +      E           Q+       +  
Sbjct: 123 KGIGSPILAPVTTGLGEIYQYVVRAKNGYEKKYQETELRTIQDWIVRRQLLGVNGVAEVS 182

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                L Q     DP++L+    T A +       N +  G             ++ L+ 
Sbjct: 183 SFGGKLKQYEIAIDPNKLQSHNITIADVFTALEKNNQNTGGAYIEKGPTLLYIRSEGLLS 242

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
               I    +                             +V   N  +  A+  + + + 
Sbjct: 243 TIENIKDTSIKNTYTGSPLFIRD--------------VADVRIGNAIRYGAMTFNKKGVQ 288

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           +  ++ A+       + N  I+      A ++       +             +      
Sbjct: 289 SGEVSGAVVMMLKGANSNVVIKNIKERIAQIQKTLPEGVVIEPFLDRTKMVNNAIHTVSK 348

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
                A +V+ VL + +   + GL+    I L ++  + +++L G +  L S+    L  
Sbjct: 349 NLLEGALIVIFVLVLFLGNFRAGLIVASVIPLAMLFAVIMMNLFGVSGNLMSLGA--LDF 406

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFF--- 480
           GL VD  +++ E +  +   +++   S     S  + S     N       ++L  +   
Sbjct: 407 GLIVDGAVIIVEAVLHQLSYHKTTKLSAQQMDSEVSNSASKMMNSAVFGQIIILVVYIPI 466

Query: 481 ------GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
                  G   +  A T+  +++ +   +++ +  +    +        + + L    +I
Sbjct: 467 LTLEGIEGKMFKPMAQTVAFALIGAFLLSLTYIPMVSALFLNNNVSNKKNFSDLIMERII 526

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLSV 593
                       +    IS + ++  + ++    +              V        ++
Sbjct: 527 EVYTKYLKKMIEYPKTVISSVIALFVLAIVILSFMGGEFIPSLEEGDFAVETRVLTGSNL 586

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
             S     Q   I    F   +  + +       +   +     +   + +    ++   
Sbjct: 587 QTSITAVSQGAKILLDKFPEVQKVVGKTGSSEVPTDPMSVDASDMMVILKDKSDWTSAST 646

Query: 654 TEIVGPKISREL 665
              +  K+++EL
Sbjct: 647 FNELSAKMAKEL 658



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 95/244 (38%), Gaps = 12/244 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L ++ I +   Q    +    + + +       Q+ V E+  K   ++        T 
Sbjct: 805  SQLANVTITEGPNQIQREDAKRRIVIGFNVRGRDVQSIVTELQDKVNKKLKLPVGYYTTY 864

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +      ++  + V IS I + + ++  F      L   + + L +   + F AL 
Sbjct: 865  GGAFENLNAAKQRLFIAVPISLILIFVLLFFAFKSVKQGLLIYSAIPLSMIGGIFFLALR 924

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            G+ F+++A    + L G +V + +V+   ++R++          + + ++ +     L  
Sbjct: 925  GMPFSISAGVGFIALFGVAVLNGLVLIAEFNRIK-----KLGETNLKSIVIQGARIRLRP 979

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + T+  A +  LPMA+    G  V    A  +  G+++A   ++F+   + +       
Sbjct: 980  VLMTAFVASLGFLPMALSSGSGAEVQKPLATVVIGGLLIATFLTLFVLPILYIMFEKGTK 1039

Query: 829  KNAR 832
               +
Sbjct: 1040 LEPK 1043



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 86/267 (32%), Gaps = 16/267 (5%)

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           + G              + +R    +     +      G    +++              
Sbjct: 256 YTGSPLFIRDVADVRIGNAIRYGAMTFNKKGVQSGEVSGAVVMMLKGANSNVVIKNIKER 315

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
           +  ++K + E V +    +   +       + +  +     + I + + +     +   L
Sbjct: 316 IAQIQKTLPEGVVIEPFLDRTKMVNNAIHTVSKNLLE---GALIVIFVLVLFLGNFRAGL 372

Query: 695 GAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             I   ++ +          LFG+  NL ++ A+    G  V+  V++ + +   +  + 
Sbjct: 373 --IVASVIPLAMLFAVIMMNLFGVSGNLMSLGAL--DFGLIVDGAVIIVEAVLHQLSYHK 428

Query: 753 TSISFRDLIDKSINETLGRSVYTS----MAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
           T+      +D  ++ +  + + ++    +   +  +P+       G +    A  +AF +
Sbjct: 429 TTKLSAQQMDSEVSNSASKMMNSAVFGQIIILVVYIPILTLEGIEGKMFKPMAQTVAFAL 488

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           + A   S+     +     +    N +
Sbjct: 489 IGAFLLSLTYIPMVSALFLNNNVSNKK 515


>gi|256824614|ref|YP_003148574.1| cation/multidrug efflux pump [Kytococcus sedentarius DSM 20547]
 gi|256688007|gb|ACV05809.1| cation/multidrug efflux pump [Kytococcus sedentarius DSM 20547]
          Length = 1062

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/675 (10%), Positives = 174/675 (25%), Gaps = 33/675 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +   +   +GL               FP  +    + +G D +         
Sbjct: 9   LKNRALVALATVLTIIVGLFSTTSLKQELLPSLEFPLVVAVTPV-VGADSQ--------- 58

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    +     L        +     + + ++       ++    +   + 
Sbjct: 59  ----VVESQVTEPMERAAEQLDGVERVQSTSSNGLSVVQVTLDYGTSLDDAKAALQSEVT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           G+   L    +  ++         I+       +     +E+   +    +  +   E  
Sbjct: 115 GL--DLPEGAEPQVI-VGAFDAFPIMQVSATGGEDTEALVER---LESTVVPALEKVEGV 168

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +     ++    D         T   ++           G          +    
Sbjct: 169 REVQLTGVRDERVEISLDQRAAAAAGVTPQTIATALQSNGVVVPGGSLTDGDQSLAVQVG 228

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
               D  E+  + L    A+       P    +                +          
Sbjct: 229 ASFSDIEELRAMPLAAQPASGGEGAQDPPAIPTL----------GDVAEVELTEPPATGY 278

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +              L           V          S  
Sbjct: 279 TRTDGEAAVTLGIVKTPDGNTVGISHAVSDELESLAPELGDDGRLTVVFDQAPFVEQSIH 338

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +     ++V+ + +L  +  LV   SI L++++ +  L + G +L + ++  +
Sbjct: 339 DLTVEGLLGLTFAILVVLIFLLSIRLTLVTAVSIPLSLLVAMIGLQVAGYSLNILTLGAL 398

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G  VD +I+V E I+      ++   ++    +     +  S +      + L   
Sbjct: 399 TIAVGRVVDDSIVVIENIKRHVDGGEAKAQAIPRAVAEVAGAVTSSTLATAAVFLPLGLV 458

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG      R FA+T+ L++L S+  A++I+  +  + +              +     + 
Sbjct: 459 GGQVGELFRPFALTVVLALLASLLVALTIIPVLGYWFLGGPARSGRSEQEREQALHTDEP 518

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
             +Q          I+     C   LL   G      F     LG   +  V ++     
Sbjct: 519 DWLQRGYLPVLRTVIARPLLTCLAGLLVFAGTLGMAGFVKTDFLGSAGDTQVTITQELPA 578

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
             +L++ D + Q  +     +  ++                              + +  
Sbjct: 579 GTALKVTDAAAQEVEETLAGIDGIETVTATIGDTGDGAAAFLGGGASSAQFFVSMDEDAD 638

Query: 658 GPKISRELIRKGIVG 672
              +   +       
Sbjct: 639 SEAVRTRIEEALADA 653



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 72/212 (33%), Gaps = 6/212 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V    L        +  + +      +              V + ++    E+     +
Sbjct: 264 DVAEVELTEPPATGYTRTDGEAAVTLGIVKTPDGNTVGISHAVSDELESLAPELGDDGRL 323

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                  P + + +    + G++    A+L+ +         L    ++ L +   +   
Sbjct: 324 TVVFDQAPFVEQSIHDLTVEGLLGLTFAILVVLIFLLSIRLTLVTAVSIPLSLLVAMIGL 383

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            + G   N+  + A+   +G  V+D +VV + ++   +      +    I +++ E  G 
Sbjct: 384 QVAGYSLNILTLGALTIAVGRVVDDSIVVIENIK---RHVDGGEAKAQAIPRAVAEVAGA 440

Query: 772 SVYTSMAAFISVLPMAVWGGSV---IGSFAIP 800
              +++A     LP+ + GG V      FA+ 
Sbjct: 441 VTSSTLATAAVFLPLGLVGGQVGELFRPFALT 472



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 81/240 (33%), Gaps = 7/240 (2%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++  ++  D        +      +    G     T   E+        +P     +   
Sbjct: 789  DIAQVEQVDSPVSITRTDGERSATITTVNGTDNLGTFTQELTSAVDGVDLPEGVEVSVGG 848

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                 +    + G+  +    I  LI +         L  + ++    T  +    +  I
Sbjct: 849  ESEDQAEAFAQLGLAMLAAVGIVYLIMVAAFRSIVQPLILLVSIPFAATGAIALLIITQI 908

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
               +  +   L L+G  V + +V+ D + +        +S    + +     L   + T+
Sbjct: 909  PLGVAGMIGGLMLVGIVVTNAIVLIDLVNQYR---ERGMSVERAVVEGGRHRLRPILMTA 965

Query: 777  MAAFISVLPMAVW---GGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +A   ++LPMA     GG+ I    AI +  G+V +   ++ +   + + +    A+  R
Sbjct: 966  LATICALLPMAFALTGGGAFISQPLAIVVIGGLVSSTLLTLLLVPALYVIVERLAARFTR 1025


>gi|251796141|ref|YP_003010872.1| acriflavin resistance protein [Paenibacillus sp. JDR-2]
 gi|247543767|gb|ACT00786.1| acriflavin resistance protein [Paenibacillus sp. JDR-2]
          Length = 1011

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/638 (10%), Positives = 171/638 (26%), Gaps = 49/638 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN + + + ++I     L +  N      ++  P                    VL    
Sbjct: 10  NNKFALWIMTVIVLFAGLYSGLN----MKMETLPDITIPIV---------SVSTVLPGAA 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    ++    ++       +  +  + I + +      E    +V   L  +
Sbjct: 57  PEEVMEKVTKPIEQRTRNMEGVDSVSSTSYENASSIIIQYKYGTNMEKAETEVKSLLADI 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    +   +   +     ++    +I        + S  +    + ++        
Sbjct: 117 K--LPEGTQDPSVSRISLNAFPVI--SLSIADDSQSLEQLSALVEGTILPELQGVSGVAD 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S + + +   E D ++L Q   T   +                        D  + +
Sbjct: 173 VQVSGQNVKEGQLEFDQAKLAQYGLTEDAVKGIIQASAMKAPLG-----IFEFGDSEKAV 227

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V D    +   L       + K           +  +                       
Sbjct: 228 VVDGNVTTEEDLKNLVLMPNVKLSDVAKVTVEGKAESVSRTNGKDS-------------- 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         A  +    +         ++  +  + +             S    
Sbjct: 274 ------IGINIVKSADANTVDVVNNVKDAIKKIQENNDGLTIVT-TLDQGKPIEKSVETM 326

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A   ++++ + +   +  ++A  SI L++++ L LLS +  TL + ++  + +
Sbjct: 327 ITKAVIGALFAVLIIMIFLRDIRSTIIAVVSIPLSILIALLLLSQMDITLNIMTLGAMTI 386

Query: 423 GIGLAVDSNILVNERIREENRKNQ---SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            IG  +D +I+V E +                +    S  +  I  S +  +   + + F
Sbjct: 387 AIGRVIDDSIVVIENVYRRMALKGEVLKGKELILAATSEMFVPIMSSTLVTIAVFLPMAF 446

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G        FA+T+  ++L S+  AI++V  +   + +        ++      L   
Sbjct: 447 VSGMVGEIFTPFALTVVFALLASLLVAITVVPMLAHMMFKKGIKAGKAVDHDKHGRLANW 506

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                        +   I   +    +  T  +          +  ++   P        
Sbjct: 507 YKGALTWSLNHKWITSIIAIVLLVGSICLTPLIGMSFLPGDEQKSMIVTYNPAPGETKEQ 566

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                   +      +G       +      S A ++ 
Sbjct: 567 VEAMALKAEEELMKREGIDIVQYAVGGSNPFSPAASKQ 604



 Score = 85.1 bits (208), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 100/255 (39%), Gaps = 8/255 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V    PV  + V            S        + +         S     V   ++K I
Sbjct: 759  VTIKSPVTGAEVALKDVVTIEEGKSPNTITRLDDRINAEVTADVVSSNVAAVSSDLQKMI 818

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLI 701
             E+   + +        +  +E   +  + ++ +   + + + I F       AI  +L 
Sbjct: 819  DEMKLPAGVDIKIGGVTEDMQESFMQLGLAMLAAIAVVYLVLVITFGGALTPFAILFSLP 878

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              +   L    + G   ++TA+  +L LIG  V + +V+ DR+   +      +S R+ +
Sbjct: 879  FTVIGALVGLYIAGETISVTAMIGMLMLIGIVVTNAIVLVDRV---IHKQKEGLSVREAL 935

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             ++    L   + T++A   ++LP+A+    GG +    AI +  G++ +   ++ I  P
Sbjct: 936  LEAAGTRLRPILMTAIATVGALLPLALGFESGGLISKGMAITVIGGLISSTLLTL-IFVP 994

Query: 819  ILLFIYDWRAKNARI 833
            ++  +++ + K   I
Sbjct: 995  MVYELFNRKKKAKAI 1009



 Score = 80.5 bits (196), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 95/240 (39%), Gaps = 3/240 (1%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + +      +   +    +   +  ++    ++V     ++   KKI E     TI  T 
Sbjct: 254 AKVTVEGKAESVSRTNGKDSIGINIVKSADANTVDVVNNVKDAIKKIQENNDGLTIVTTL 313

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
             G  I + +       VI +  A+LI +         + A+ ++ L I   L   +   
Sbjct: 314 DQGKPIEKSVETMITKAVIGALFAVLIIMIFLRDIRSTIIAVVSIPLSILIALLLLSQMD 373

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I  N+  + A+   IG  ++D +VV + + + M L    +  ++LI  + +E     + +
Sbjct: 374 ITLNIMTLGAMTIAIGRVIDDSIVVIENVYRRMALKGEVLKGKELILAATSEMFVPIMSS 433

Query: 776 SMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++      LPM  V G  G +   FA+ + F ++ +   +I +   +   ++    K  +
Sbjct: 434 TLVTIAVFLPMAFVSGMVGEIFTPFALTVVFALLASLLVAITVVPMLAHMMFKKGIKAGK 493


>gi|46198685|ref|YP_004352.1| acriflavin resistance protein B [Thermus thermophilus HB27]
 gi|46196308|gb|AAS80725.1| acriflavin resistance protein B [Thermus thermophilus HB27]
          Length = 1099

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/470 (10%), Positives = 119/470 (25%), Gaps = 29/470 (6%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                     + V   +    ++  S L    +   S  +  + + + F      +  A 
Sbjct: 50  ISTSYPGAGPEEVAEQVSKPLEDALSTLTGVDVIGSSSTEGFSLVFVQFKQGVDVDQGAV 109

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           + +  +  + S L  D    ++         I+              E      R    +
Sbjct: 110 EASQKVAAIRSTLPKDASAPVVQKFDPSASPILYLALEAPG--EDLAEVLRYAERTLKPR 167

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           + +         +      +    DP RL+ L     ++         +           
Sbjct: 168 LQLVSGVADIRLTGAPKTAIKVYLDPDRLQALGIPPLQVVQALSASALNLPLG----ALT 223

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            +     Y +      +                             R         + + 
Sbjct: 224 EEERRLVYTLRATPRTASEVAEVLV------------------DPGRGIRVRDVARVEEA 265

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                    +                +     +              P     V      
Sbjct: 266 REAPTTLNRVNGRPAVVLAVVKTPDANAVAVAQGVRRALEETS--LPPGYRAEVALDTTR 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +         + A  V +V+ + +           +I + +   + L  +LG T  
Sbjct: 324 FIQAAVEDTVREAFLAALAVSLVVLVFLGKLNSVFSVILAIPITLSGAILLFGVLGFTYN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L S+  + + +G+ VD +I+V E I    R    +  ++  G S   + +  + ++ L  
Sbjct: 384 LISLLALTVAVGIVVDDSIVVAENIDRYRRMGLGLKEAVLKGASEVSAAVAAATLSLLAV 443

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            + + F     G   + F + M  +I +S   A+  +   + +       
Sbjct: 444 FLPISFLPGLIGQIFQQFGLGMAAAIGVSWLEALLFLTVRLAYFPDPDPP 493



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            + +  +P    A     E+ +      +    ++         + EL     +   ++ +
Sbjct: 884  ININLKPEAPGALQVQAELEQDLRAAGLLGDGVELVASGLGSFTEELASLAPLAFGLALV 943

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
               + I  +F  W + L  +  + L +          G   ++ +V  V+ LIG    + 
Sbjct: 944  LNYLVIASQFNAWRYPLYLLLPVPLALVGAFWLTYFLGTGLDVISVLGVVMLIGLVTKNA 1003

Query: 738  VVVYD----RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            +++ D    RMR+           ++ + ++    L   + T++   I  LP+ +    G
Sbjct: 1004 ILLLDFASRRMRE--------KPLKEALVEAARLRLRPILMTTLTVLIISLPLLLGAGEG 1055

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                    + +  G++ +   ++F+       +    A+  
Sbjct: 1056 SEYRRPLGVVILGGMLSSTLLTLFVVPAAFFAVEGRLARKG 1096



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 75/232 (32%), Gaps = 14/232 (6%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR      +  +             V L            V + V++ + E       + 
Sbjct: 256 VRDVARVEEAREAPTTLNRVNGRPAVVLAVVKTPDANAVAVAQGVRRALEETSLPPGYRA 315

Query: 654 TEIVGPK--ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
              +     I   +        + +    L+ +    K       I  + + ++  +  F
Sbjct: 316 EVALDTTRFIQAAVEDTVREAFLAALAVSLVVLVFLGKLNSVFSVILAIPITLSGAILLF 375

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINET 768
            + G  +NL ++ A+   +G  V+D +VV    DR R         +  ++ + K  +E 
Sbjct: 376 GVLGFTYNLISLLALTVAVGIVVDDSIVVAENIDRYR------RMGLGLKEAVLKGASEV 429

Query: 769 LGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
                  +++     LP++      G +   F + MA  I V+   ++    
Sbjct: 430 SAAVAAATLSLLAVFLPISFLPGLIGQIFQQFGLGMAAAIGVSWLEALLFLT 481


>gi|39995502|ref|NP_951453.1| AcrB/AcrD/AcrF family protein [Geobacter sulfurreducens PCA]
 gi|39982265|gb|AAR33726.1| AcrB/AcrD/AcrF family protein [Geobacter sulfurreducens PCA]
          Length = 1077

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 67/516 (12%), Positives = 156/516 (30%), Gaps = 25/516 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +    ++      +G+   L         +  P  +               +L +     
Sbjct: 19  SKLTPLIVIASLLLGVYAVLVT-----PREEEPQIVVPMV---------DIYLPMPGSTP 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +    +     L          R     +T+ F      E+   K+   L    
Sbjct: 65  QEVEERVVSPIERKMWELNGVEYVYAMSRPGMGLVTVRFLVGENMEDSLVKLYNKLMSNR 124

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L     + L+V  +  ++ I+      ++     + +   I R+  D++   E+  + 
Sbjct: 125 GLLPPGAGEPLVVPKSIDDVPILSLTLWSERYDGFMLRR---IAREICDELKKGENVAEA 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                +   L    D +RL     +  +++      N S +   F              +
Sbjct: 182 EIKGGLNRTLSVRLDSARLAAYNLSPLQVAAAIHAGNASLQSGAFAADNRETIVETGSFI 241

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
            D  +   + +               V     E     FF +      K ++        
Sbjct: 242 ADADDARRLVVGVFNGRPVYLADVATVTDGAPEPANYVFFGLGPAAGTKGISGNQAENY- 300

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                     + +   +  +  E        L+   +P  + +   RN G      +   
Sbjct: 301 ---PAVTIAVAKRKGANATWVAEDLLHRVEALKGKVIPSDVKVTVTRNYGETAREKNNEL 357

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                +A + + +L  + +  + G VA  +I + + LT+ + + +G TL   ++  ++  
Sbjct: 358 LYHMFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMLVFNQIGYTLNRITLFALIFS 417

Query: 424 IGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           IG+ VD  I+V E I             +         +    +    + + + + F G 
Sbjct: 418 IGILVDDAIVVVENIHRYFTTTRFKPLEAAIRAVDEIGNPTVLATFAVIASILPMGFVGG 477

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
             G  +R   +   +++L+SMF A  +       ++
Sbjct: 478 LMGPYMRPIPVGASMAMLLSMFIAFIVTPYFAYRLM 513



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 5/156 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++AI++ I I +   W     A   + + +  T+  F   G   N   + A++  IG 
Sbjct: 361 MFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMLVFNQIGYTLNRITLFALIFSIGI 420

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + + +     TT     +   ++++E    +V  + A   S+LPM   GG 
Sbjct: 421 LVDDAIVVVENIHRYFT--TTRFKPLEAAIRAVDEIGNPTVLATFAVIASILPMGFVGGL 478

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +   +    +  +  ++++   +  +       +  
Sbjct: 479 MGPYMRPIPVGASMAMLLSMFIAFIVTPYFAYRLMK 514



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/244 (15%), Positives = 86/244 (35%), Gaps = 7/244 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D ++ R NL+S+               + +    +  D +       + ++  T+     
Sbjct: 830  DQTLYRKNLKSVVYVTGDVAGAIEAPVYAILQMQKEIDKIPLPGGYRIEQRAATQPWSEE 889

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
                       I+ E+ R   +      I + + +   FK +   L  +  + L +   L
Sbjct: 890  RPGIKWDGEWHITYEVFRDLGLAFGAVMILIYLLVVAWFKDFTTPLVIMGPIPLTLIGIL 949

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               ALFG  F  T++   + L G  V + +++ D     MK     +   + I ++    
Sbjct: 950  PGHALFGAFFTATSMIGFIALAGIIVRNSIILID--FAEMKR-REGLPLDEAIIEAGAVR 1006

Query: 769  LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                + T  A  +    +      +    A+ + FG + + + S  +  PI+ F+ +   
Sbjct: 1007 FRPMLLTGAAVVVGSFVIVF--DPIFQGLALALMFGEIASTTLSR-VTIPIVYFLVERWK 1063

Query: 829  KNAR 832
            +  R
Sbjct: 1064 EKRR 1067


>gi|258513843|ref|YP_003190065.1| acriflavin resistance protein [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777548|gb|ACV61442.1| acriflavin resistance protein [Desulfotomaculum acetoxidans DSM
           771]
          Length = 1032

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/552 (13%), Positives = 167/552 (30%), Gaps = 46/552 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M    ++  +  ++  +G++            + FP A               S + LE 
Sbjct: 7   MNRPHFIYTILIILFVMGVV-----GYFMLPQNMFPDAERPQI----------SIVTLEP 51

Query: 61  -DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                ++   +    +++   + +      + R   + +T  F  S+  E  A      L
Sbjct: 52  GASSSYIADHVSRPIEKVLYSVSQVRKVSSTSRDEVSVVTAEFEYSKGLEGAATDTANAL 111

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ-RIDQIGISE 178
               + L  D K+  +         +++   +  +  + A+     +      DQ+    
Sbjct: 112 SRATNSLPQDIKQPQIYKIGAYTPPVMIWALSPQKGSNLALADVRYLAANSIADQLVKVR 171

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           +            ++  E +  +L       A +       N      +      ++   
Sbjct: 172 AIANVDIFGGYEKEVVVEINKDKLSSYDLNIADVIVALQKNNRDIPLGLVISNHKQNIFK 231

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            Q        ++ I +N                        +        N+        
Sbjct: 232 LQIEASQIEGLNNIQIN------------------------KLVTMADISNVRYGTKERT 267

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G                   S    I+ A      L+A    I    V + +      S
Sbjct: 268 AGYHGNGEPSIALAIQRPENGSVLAAIDAAEAELEKLKAQYPQINF-QVTDSSRDLVEKS 326

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
           +     +      ++ +V+F+ +   +  LVA  SI    + T++L+ L G  + + ++ 
Sbjct: 327 NEDMFASLRDAIIMISVVMFLFLANWRIMLVAALSIPFVYLGTISLMWLFGQEINMVTLT 386

Query: 419 GIVLGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           GI+L +G+ VD  +++ E I     +  +    +   G       +F   ++ ++    L
Sbjct: 387 GIILALGMLVDDAVVILENIERHLHELKEDPLTAAVKGTQEVMLAVFAGTVSTMVVLAPL 446

Query: 478 FFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F G       R  A T+ ++I IS   +I+ +  +   ++   K K+     +      
Sbjct: 447 LFVGEYPQKIFRPLAGTLIIAIFISYLVSITFIPLIAPKLLSKSKGKNRLEFKVQNICDF 506

Query: 535 PDCIAIQFMRAR 546
                  F   +
Sbjct: 507 FLNPLKSFYVKK 518



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 83/255 (32%), Gaps = 7/255 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +  N+ V ++ + +     +     +         L   + + G  +A     E   +K+
Sbjct: 245 IQINKLVTMADISNVRYGTKERTAGYHGNGEPSIALAIQRPENGSVLAAIDAAEAELEKL 304

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLI 701
               P    Q T+     +  +        +  + I + + +      W   L A  ++ 
Sbjct: 305 KAQYPQINFQVTDS-SRDLVEKSNEDMFASLRDAIIMISVVMFLFLANWRIMLVAALSIP 363

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                T+    LFG E N+  +  ++  +G  V+D VV+ + +     L+          
Sbjct: 364 FVYLGTISLMWLFGQEINMVTLTGIILALGMLVDDAVVILENI--ERHLHELKEDPLTAA 421

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            K   E +      +++  + + P+   G     +    A  +   I ++   SI     
Sbjct: 422 VKGTQEVMLAVFAGTVSTMVVLAPLLFVGEYPQKIFRPLAGTLIIAIFISYLVSITFIPL 481

Query: 819 ILLFIYDWRAKNARI 833
           I   +        R+
Sbjct: 482 IAPKLLSKSKGKNRL 496



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/168 (12%), Positives = 56/168 (33%), Gaps = 7/168 (4%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
               ++I+   +   +   F  W   L  +  + L +        L      L A+   + 
Sbjct: 864  FAAILIALFLLYAVLVATFKSWKAPLAIMLAIPLSLIGGAWSLILTNKHMCLPAIMGFVL 923

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-- 786
            L G  V + +++ D   + +         R+ + KS+       + T+ A  + ++P+  
Sbjct: 924  LSGIIVKNSILLIDFTEEAL---GQGTPLREALLKSVTLRTRAILMTAFATAVGMVPIAM 980

Query: 787  -AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
                G   +   A+    G++     ++         +   ++    +
Sbjct: 981  EWAIGLERLSPLAVVAIGGLIFGTFLTLLFVPVFYGMMSHKKSDRPTL 1028


>gi|188583318|ref|YP_001926763.1| heavy metal efflux pump, CzcA family [Methylobacterium populi
           BJ001]
 gi|179346816|gb|ACB82228.1| heavy metal efflux pump, CzcA family [Methylobacterium populi
           BJ001]
          Length = 1057

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/555 (13%), Positives = 160/555 (28%), Gaps = 42/555 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++I        G+L      L    LD  P            D++   +      
Sbjct: 11  RNLVLVLIGTVFAVATGVLA-----LKTLPLDAIPDLS---------DVQAIVYTEYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  FL G
Sbjct: 57  SPTTVEDVVTFPLTTAMLTVPKAKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEFLNG 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L V     L    T             ++ ++        +IR        +E   
Sbjct: 117 AASRLPVGVTPTLGPDATGVGWVYQYVVVAKERTLAELRSLQDWVIRF---GASRAEGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +  G    + Q     DP+RLR    +  K+       N    G    +         + 
Sbjct: 174 EVAGVGGFVKQYNVVVDPNRLRAQGISLNKLRDAIRSSNADVGGRTVELSEFEFMVRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +I                      +     G              P        
Sbjct: 234 YLKSVADIE-------------------NIVLKTVGGTPLRLRDVARVELGPDERRGITE 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    IE      A +          +           +   
Sbjct: 275 MNGEGEVAGGIVLQRFGANALNVIEGVKAKLAEVAKSLPAGTEILPVYDRSQLIDAAIDT 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    + +V +V  + +L+ +  LVA   + + +++  A +  LG    + S+ GI 
Sbjct: 335 LRHTLVEESIVVSLVCIVFLLHVRSALVAILMLPVGILMAFAGMRALGIGANIMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + +G  VD+ I++ E   +        +     L    +    ++F S +   ++ + +F
Sbjct: 395 IAVGTMVDAAIVMIENAHKHLERAPPGKPRVEVLVEAAAEVGPSLFFSLLVITMSFLPIF 454

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   ++++V A+M+  +R + +             + 
Sbjct: 455 TLESQEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVLFVRGRIVPEHRNPLNRLLIWLY 514

Query: 536 DCIAIQFMRARFWGV 550
             +    +RAR   +
Sbjct: 515 LPLIAGVLRARLLTI 529



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 63/159 (39%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++S + ++  + +R     AL AI  L + I          GI  N+ ++  +   +G
Sbjct: 343 SIVVSLVCIVFLLHVR----SALVAILMLPVGILMAFAGMRALGIGANIMSLGGIAIAVG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+  +V+ +   K+++         +++ ++  E      ++ +   +S LP+     
Sbjct: 399 TMVDAAIVMIENAHKHLERAPPGKPRVEVLVEAAAEVGPSLFFSLLVITMSFLPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVLFVRGR 497



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 53/161 (32%), Gaps = 14/161 (8%)

Query: 685  WIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV--- 740
            ++ F+     L  + +L   +   +      G   ++      + L G +    V++   
Sbjct: 878  YLNFRRLTETLIVMLSLPFALVGGVWLLWWMGFNLSVAVAVGFIALAGVAAETGVIMLVY 937

Query: 741  ----YDRMR---KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
                 D +R   +           R  I     E +   + T +A    +LP+      G
Sbjct: 938  LDHALDEVRAQCEREGRPLARPDLRRAIMVGAVERVRPKMMTVVAIMAGLLPILWSTGSG 997

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              V+   A+PM  G+V +   ++ +   +   +       A
Sbjct: 998  SEVMQRIAVPMIGGMVSSTVLTLVVIPAVYALVKGRGLPPA 1038


>gi|222053586|ref|YP_002535948.1| acriflavin resistance protein [Geobacter sp. FRC-32]
 gi|221562875|gb|ACM18847.1| acriflavin resistance protein [Geobacter sp. FRC-32]
          Length = 1069

 Score =  126 bits (316), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 83/675 (12%), Positives = 209/675 (30%), Gaps = 35/675 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +    ++      +GL   L         +  P  +        +D     +L +     
Sbjct: 17  SKLTPLIVGASLLLGLYAVLVT-----PREEEPQIVVPM-----ID----IYLPMPGATP 62

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +    +     +K       + R     +T+ +      EN   K+   +    
Sbjct: 63  REVEERVVKPMEAKMWEIKGVEYIYSASRPGLGIVTVRYKVGEDMENSLVKLYNKVMSSK 122

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           + L     +  +   +  ++ I+      ++   + + +   + R+  D++  SE+  + 
Sbjct: 123 AALPPGAGEPQVAPKSIDDVPILTLTLWSERYDHYTLRR---VARELCDELKKSENVAES 179

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   Q+    DP +L  L  +  ++       N++ +   F            YLV
Sbjct: 180 DIKGGQARQIKVRLDPGKLAGLGLSPLQVMGALQKENSAVRSGSFS------GMSKDYLV 233

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI-GKPLAVVLDGRV 302
           E    ++G                  V+            +    +  G+    V     
Sbjct: 234 ETGTFLAGADTVRRIVVAAKAGRPVYVEDVATVEDGPEEAKDYVFHGLGRSAEGVEKASR 293

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             +        + +   +  +  E       +L+   +P  +++   RN G      +  
Sbjct: 294 AASYPAVTLSFAKRKGANATWVAEDLVKKTELLKGKLIPSDVHVTVTRNYGETAREKNNE 353

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                 +A   + +L  + +  + G VA  +I + + LT+ + + +G TL   ++  ++ 
Sbjct: 354 LLFHMFLAAFSVTILIAVFMGWRAGAVAAIAIPVTLALTMLIFNQIGYTLNRITLFALIF 413

Query: 423 GIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E I         +   +         +    +    + + + + F G
Sbjct: 414 SIGILVDDAIVVVENIHRYFTTTRFAPLEASIKAVDEIGNPTILATFAVIASILPMGFVG 473

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFII----RYKKMKSIDINPLSRFFLI 534
              G  +R   +   +++L S+  A  +        +     + + + +  + L+ F+  
Sbjct: 474 GLMGPYMRPIPVGASMAMLFSLLIAFIVTPYFAYRFMKGESHFGREEVVKESRLTLFYRR 533

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTH---GLNYGIDFKGGIQLGVLANRPVDL 591
                +   R R+  +   ++  + S  L++           D K  +Q+ V A     L
Sbjct: 534 FMGNLLHKKRVRYVFLTGVVVLLLASCSLIYFKLVTVKMLPFDNKNELQVIVDAPDGTAL 593

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                 L  +     +       + ++        + + +   L          V L   
Sbjct: 594 EETARMLAEMGDALRNVPEVVDFQTYVGVSSPFNFNGLVRHYYLRKGSNVGDIQVNLVHK 653

Query: 652 QNTEIVGPKISRELI 666
                    I++++ 
Sbjct: 654 SKRSEQSHDIAKKIR 668



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 63/156 (40%), Gaps = 5/156 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++A ++ I I +   W     A   + + +  T+  F   G   N   + A++  IG 
Sbjct: 358 MFLAAFSVTILIAVFMGWRAGAVAAIAIPVTLALTMLIFNQIGYTLNRITLFALIFSIGI 417

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + + +     TT  +  +   K+++E    ++  + A   S+LPM   GG 
Sbjct: 418 LVDDAIVVVENIHRYFT--TTRFAPLEASIKAVDEIGNPTILATFAVIASILPMGFVGGL 475

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +   +    +  +  ++ +   +  +          
Sbjct: 476 MGPYMRPIPVGASMAMLFSLLIAFIVTPYFAYRFMK 511



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 83/243 (34%), Gaps = 6/243 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D S+ R NL+++               + +    +  D +A     ++ ++  ++     
Sbjct: 827  DKSLYRKNLKNVVYVTGDVAGVVEAPVYAILKMQKEIDKIALPGGYKIEQRAASQPWSEI 886

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
                       I+ E+ R   +      + + + +   FK +   L  +  + L +   L
Sbjct: 887  RPGLKWDGEWHITYEVFRDLGLAFAAVMVLIYVLVVAWFKDFTTPLVIMAPIPLTLIGIL 946

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               A+ G  F  T++   + L G  V + +++ D     ++     ++  + I  +    
Sbjct: 947  PGHAIMGAFFTATSMIGFIALAGIIVRNSIILID--FAELRR-REGMALDEAIIDAGAVR 1003

Query: 769  LGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                + T+ A  I    +      +    A+ M  G + + + S      +   +  W+ 
Sbjct: 1004 FRPMLLTAAAVVIGSFVIVF--DPIFQGLALAMMCGEIASTALSRVTIPVLYFLVQSWKE 1061

Query: 829  KNA 831
            K  
Sbjct: 1062 KRQ 1064


>gi|326779790|ref|ZP_08239055.1| acriflavin resistance protein [Streptomyces cf. griseus XylebKG-1]
 gi|326660123|gb|EGE44969.1| acriflavin resistance protein [Streptomyces cf. griseus XylebKG-1]
          Length = 1051

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/517 (11%), Positives = 153/517 (29%), Gaps = 30/517 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  +I  + L+      +PQ      P+        L            +  
Sbjct: 6   RFSLAQRALIGLISIVALVFGA-IAIPQLKQQLLPTIELPMVSVLAP---------YQGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF-KENIADKVTLFLQ 120
             D V   +    +     +        +  +    I  +F       + +   +   + 
Sbjct: 56  SPDVVEKQVVEPLENSLKAVDGVEGITSTASEGNALIMATFDFGDEGTKQLVADIQQAVN 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L       ++  +T+   ++VL+  +           + ++ R  +  +   E  
Sbjct: 116 RARAQLPDGVDPQVVAGSTDDIPTVVLAVTSDKDQQV----LADQLDRTVVPALQDIEGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q        +Q+    D  +L         ++               G   +     ++
Sbjct: 172 GQVTVDGVRDLQVSVVPDDKKLAGAGLDAGTLAQALQS----------GGATVPAGAFSE 221

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                 +++ G + +      +             +             + +  +  +  
Sbjct: 222 SGKSRTIQVGGAYTSLQQI--EDLQVVAKNPAGAGDRPGDPVRLGDVAEVKQEPSTAVSI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      + +     S     +        LR          V      A   S S
Sbjct: 280 TRTNGRPSLAVMATMDKDGSAVAISDAVKDKLPDLRKDLGEGAELTVVSDQGPAVSKSIS 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A+     ++V+ + +   +  LV   SI L+++L L +L     +L + ++  +
Sbjct: 340 GLTTEGALGLVFAVVVILVFLASIRSTLVTAVSIPLSIVLALIVLWTRDLSLNMLTLGAL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD +I+V E I+      +    ++          +  + +T +   + +   
Sbjct: 400 TIAIGRVVDDSIVVLENIKRHLGYGEERHAAIINAVKEVAGAVTSATLTTVAVFLPIGLV 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG        F++T+  ++L S+  ++++V  +  + 
Sbjct: 460 GGMVGQLFGSFSLTITAALLASLLVSLTVVPVLSYWF 496



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/179 (16%), Positives = 66/179 (36%), Gaps = 10/179 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE---LIRKGIVGVIISAIAMLIYIW 685
                V + +     ++   + +      GP +S+    L  +G +G++ + + +L+++ 
Sbjct: 302 AISDAVKDKLPDLRKDLGEGAELTVVSDQGPAVSKSISGLTTEGALGLVFAVVVILVFLA 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L    ++ L I   L       +  N+  + A+   IG  V+D +VV + ++
Sbjct: 362 ---SIRSTLVTAVSIPLSIVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAF 803
              +           I  ++ E  G     ++      LP+ + GG V   F    +  
Sbjct: 419 ---RHLGYGEERHAAIINAVKEVAGAVTSATLTTVAVFLPIGLVGGMVGQLFGSFSLTI 474



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 68/199 (34%), Gaps = 8/199 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                              V   + KKI  +        T     +   E   +  + ++
Sbjct: 803 DGQRSATITAKPVGDNTGAVSTDLAKKIDALDLPDGATATIGGVTEDQNEAFAQLGLAML 862

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +   F+     L  + ++    T  L    + G    + A+  +L LIG  
Sbjct: 863 AAIAIVFMLLVATFRSLVQPLILLVSVPFAATGALALLLITGTPLGVPAMIGMLMLIGIV 922

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
           V + +V+ D + +        +   + + +         + T++A   ++LPMA+     
Sbjct: 923 VTNAIVLIDLINQYRAQ---GLGIVEAVIEGGRHRFRPILMTALATIFALLPMALGVTGE 979

Query: 790 GGSVIGSFAIPMAFGIVVA 808
           GG +     + +  G++ +
Sbjct: 980 GGFISQPLGVVVIGGLISS 998


>gi|24111915|ref|NP_706425.1| putative inner membrane component for iron transport [Shigella
           flexneri 2a str. 301]
 gi|30062029|ref|NP_836200.1| putative inner membrane component for iron transport [Shigella
           flexneri 2a str. 2457T]
 gi|24050718|gb|AAN42132.1| putative inner membrane component for iron transport [Shigella
           flexneri 2a str. 301]
 gi|30040273|gb|AAP16006.1| putative inner membrane component for iron transport [Shigella
           flexneri 2a str. 2457T]
 gi|313646825|gb|EFS11282.1| cation efflux system protein cusA [Shigella flexneri 2a str. 2457T]
 gi|332761559|gb|EGJ91841.1| cation efflux system protein cusA [Shigella flexneri 2747-71]
 gi|332768469|gb|EGJ98653.1| cusA [Shigella flexneri 2930-71]
          Length = 1047

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 171/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPKMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V    + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCAPFLWHVRSALVAIISLPLGLCIAFIVMPFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +        LQ  D    +         +       + +    +     ++     
Sbjct: 578 PGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++   +   G+
Sbjct: 636 WRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 95/288 (32%), Gaps = 16/288 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI--LLFIYDWRAKN 830
                 G  V+   A PM  G++ A   S+FI      L++++  R +N
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRN 1047


>gi|313682896|ref|YP_004060634.1| acriflavin resistance protein [Sulfuricurvum kujiense DSM 16994]
 gi|313155756|gb|ADR34434.1| acriflavin resistance protein [Sulfuricurvum kujiense DSM 16994]
          Length = 1009

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/605 (10%), Positives = 157/605 (25%), Gaps = 51/605 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                V+    +   GL+              +P+      I              +   
Sbjct: 8   RPVTTVMFALALIFFGLV-----ERNGMPSALYPNVDFPIVI---------VTTTYKGAN 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D V   +    +E  S +           +  + +   F  S+  +   + V   +  +
Sbjct: 54  ADIVESKVSDKIEEAVSGISGLDTLSSDSSKGISIVVAQFKLSKNLDEAVNDVRDKVSSI 113

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  +  K  +         ++              +           ++   E    
Sbjct: 114 --QLPNEVDKPSVDKYALNSSPVITLFLAGTDSQ----KVMKHADEILKPRLQRIEGVGG 167

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+    DP+ L +   T   ++      N    G                 
Sbjct: 168 VTLKGLRKKQILISPDPALLAKYSLTMNDLTNIIKAQNIRMDGGKTVDPRHEYQILIDND 227

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +    +S + +                                   +   LA       
Sbjct: 228 SKTVQALSDLRI------------------------REGLSLGDVATVSDTLAEERSYAS 263

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           L        +       +     +        L A    + L  ++    G    +    
Sbjct: 264 LDGKAGVLLMVKKMTGANEIAIADALRAQLPALAALEPTMSLTPLQ-DATGYIRDTLHGV 322

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    + + L  +V+F+ +      L+A  S+ +++    A++   G T  L ++  + L
Sbjct: 323 QFDLMLGSLLASLVIFLFLRNFTLTLIAAVSLPVSIFGVFAIMGWSGQTFNLLTLTALTL 382

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG+ +D  I+V E I +     +    +   G S    +I   +   L   V +     
Sbjct: 383 AIGIIIDDAIVVIENIFKRLEAGRDRLNAAIEGVSEILFSIIAISAMLLAVFVPIAKMSG 442

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     F +T+  +I++S   A++++  +   I + +              +      
Sbjct: 443 IVGRFFTSFGVTIIAAIVVSFVIAVTLIPMIASQIAKGEHSPFYHKTEHFFVRMEERYRL 502

Query: 540 IQFMR---ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
           +        +        +F +  I       +    + K    + + A     +  ++ 
Sbjct: 503 LIHAVLKYKKTTLFSALGIFIVSIILSGTLGMVFMPKEDKSQFDITLKAPAGTSVEGMKH 562

Query: 597 NLESL 601
               +
Sbjct: 563 LSLDV 567



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 43/248 (17%), Positives = 81/248 (32%), Gaps = 4/248 (1%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +     + L  V +  ++L                L+  +    + +A    L      
Sbjct: 236 DLRIREGLSLGDVATVSDTLAEERSYASLDGKAGVLLMVKKMTGANEIAIADALRAQLPA 295

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
           +  + P  ++   +     I   L       ++ S +A L+       +   L A  +L 
Sbjct: 296 LAALEPTMSLTPLQDATGYIRDTLHGVQFDLMLGSLLASLVIFLFLRNFTLTLIAAVSLP 355

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + I          G  FNL  + A+   IG  ++D +VV + +    K         +  
Sbjct: 356 VSIFGVFAIMGWSGQTFNLLTLTALTLAIGIIIDDAIVVIENI---FKRLEAGRDRLNAA 412

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            + ++E L   +  S       +P+A   G V   F       I+ A   S  IA  ++ 
Sbjct: 413 IEGVSEILFSIIAISAMLLAVFVPIAKMSGIVGRFF-TSFGVTIIAAIVVSFVIAVTLIP 471

Query: 822 FIYDWRAK 829
            I    AK
Sbjct: 472 MIASQIAK 479


>gi|257091633|ref|YP_003165276.1| hypothetical protein CAP2UW1_4704 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048642|gb|ACV37829.1| hypothetical protein CAP2UW1_4704 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1034

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/586 (12%), Positives = 166/586 (28%), Gaps = 39/586 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
            ++   I  + ++      L Q  +D FP       ++L  +  GG          + V 
Sbjct: 13  RLIVLGISLLLIIYGAIT-LRQMPVDVFPDLNKPT-VTLMTE-AGGM-------APEEVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   + +              + I + F           ++   L  V   L 
Sbjct: 63  QLVTFPVESSMNGMPGVTRVRSVSGIGLSIIYVEFEWGSDIYRNRQQIAERLNLVREALP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 L   ++     I+L     D      +            ++       Q +   
Sbjct: 123 PGIVPQLGPISSIMG-EILLIALPADPDKISPMTVREYADWVMRPRLLTIPGVAQVIPIG 181

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + Q   E  P++L+ L     K+         +  G     +                
Sbjct: 182 GEVRQYRVEIKPAQLQALGIEREKLEAALKDFGANTSGGFLEAQ---------------- 225

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
              G            +       +   + G         D    P     DG     P 
Sbjct: 226 ---GREYLIRQIGRSSRIENLQNLVVATKNGQPILLRQVADVKLAPAVKRGDGSYKGKPA 282

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +  ++    A  S   T E    +A + ++            +       S +  +    
Sbjct: 283 VILSVQKQPAADSVQLTREVEKAMAELGKSLPKGFDTPSFLFKQADFIEHSVNNVEEALR 342

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             A LV ++LF+ +L  +  L++  +I +++++T  +    G ++   ++ G+ + IG  
Sbjct: 343 DGAILVAVILFVFLLNVRTTLISLMAIPVSLLVTALVFHYFGLSINTMTLGGLAIAIGEL 402

Query: 428 VDSNILVNERI------REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           VD  ++  E +             + V   +        S I  + +  ++  V LF   
Sbjct: 403 VDDAVVGVENVLRRLKLNRATDSPRPVAEVIAAATLEVRSAIVYATVIIVLVFVPLFVLP 462

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G       +   +SIL SM  ++++   M  +++   K      +PL  +    D  
Sbjct: 463 GIEGRLFTPLGVAYIVSILASMIVSVTLTPVMAYYLLPQMKQLHAGDSPLVIWLKRWDAK 522

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
            + +       +       +  +           +       L V 
Sbjct: 523 LLHWSFGHARRLLAGAAALVIIVAASVPFFPRSFLPPFNEGTLTVN 568



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 74/213 (34%), Gaps = 9/213 (4%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV--IIS 676
           V+ Q           V + + +    +       +            +      +     
Sbjct: 287 VQKQPAADSVQLTREVEKAMAELGKSLPKGFDTPSFLFKQADFIEHSVNNVEEALRDGAI 346

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A+++++         L ++  + + +  T   F  FG+  N   +  +   IG  V+D
Sbjct: 347 LVAVILFV-FLLNVRTTLISLMAIPVSLLVTALVFHYFGLSINTMTLGGLAIAIGELVDD 405

Query: 737 KVVVYDRMRKNMKLYTTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            VV  + + + +KL   + S R   ++I  +  E     VY ++   +  +P+ V  G  
Sbjct: 406 AVVGVENVLRRLKLNRATDSPRPVAEVIAAATLEVRSAIVYATVIIVLVFVPLFVLPGIE 465

Query: 794 IGSF---AIPMAFGIVVAASSSIFIAAPILLFI 823
              F    +     I+ +   S+ +   +  ++
Sbjct: 466 GRLFTPLGVAYIVSILASMIVSVTLTPVMAYYL 498



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 90/238 (37%), Gaps = 10/238 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S++  D   Q         + L            + ++  +   + +P       E
Sbjct: 787  SKIASVEESDGPNQVSRENSRRRIVLSANTDGRDMSKVIADIRAELAAKPLPEGYFTALE 846

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT--LILDITKTLGFFAL 713
                   +      ++ + +S   + + ++ R++   AL  I    + L +  ++    +
Sbjct: 847  GQFQAQEQAAKLITLLAL-VSLTMIFMVLYSRYR-SMALTLIIMGNIPLALIGSVIALWI 904

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   ++ A+   +TL G +  + ++       N+  +      + +I +   E L   +
Sbjct: 905  SGQPLSVAALVGFITLTGIATRNGILKISHYI-NLCAFEGETFGQHMIVRGSLERLTPVL 963

Query: 774  YTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             T++ A  +++P+ +     G  V+   A+ +  G++ +      +  P++ +++  R
Sbjct: 964  MTALVAAFALMPLLLSADAPGKEVLHPVAVVIFGGLISSTLLDT-LLTPVMFWLWGQR 1020


>gi|224477234|ref|YP_002634840.1| hypothetical protein Sca_1749 [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421841|emb|CAL28655.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 1052

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/578 (10%), Positives = 167/578 (28%), Gaps = 43/578 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + + L  ++  +G + +      +  L+  P                  + V+     
Sbjct: 12  NKFAIFLMVVLVILGGVYSSM----KMRLEMLPDVEEPMI---------SVNTVMPGATP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    D     +           +  + + +S+ D    +   + +   +  + 
Sbjct: 59  ETVQDEISDKIDNQVRRMAHVHTVKSQSLENVSMVQVSYDDGTDMDKAEEDLKKEIDKLK 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L+ + ++  L   +     +V    +         + + +I  Q + ++   +     
Sbjct: 119 --LDENAQEPELTRNSMNAFPVVAYSFSTK--HDDLKKATKDIETQLVPKLETIDGVQNV 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK-----VLPNNSKKGFMFGVRFLRDSDG 238
             + +   Q   +    +L++   + + +  +        P    +        + D + 
Sbjct: 175 QLNGQTERQAVIKFSQRKLQERGMSASGVEDYIKGASGKTPLGLFQFGKKEKSIVIDGEF 234

Query: 239 NQYLVEDKVEI-------------SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                    EI             SG        +    +     + S            
Sbjct: 235 TSVDALKNFEIPVDAAKGDEGQSGSGSETRQNGPSSSSMSAMSQSNQSQGSSSGEIVKLK 294

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
              ++          R      I+  I   KAQ +    ++                   
Sbjct: 295 DIADVNVGDERESISRTNGKDAIDVQII--KAQDANTVQVKKDTDQKIRQFIKENKGMTY 352

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
                       S         +   + +I++ + +   +   ++  SI +++++ +  L
Sbjct: 353 TKIMDTAKPIQDSIYTMLEKAILGTIVAIIIILLFLRNIRTTAISVVSIPMSLLIAMIAL 412

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYST 462
            L   +L + ++  + + IG  +D +I+V E I                +    +  +  
Sbjct: 413 KLSDVSLNILTLGALTVAIGRVIDDSIVVIENIYRRMSDKNEPLKGNQLVISATAEVFKP 472

Query: 463 IFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           I  S +  +I  + L F     G   R FA+ +  S+L S+  +I+IV A+     +   
Sbjct: 473 IMSSTLVTIIVFLPLVFVAGSVGEMFRPFALAITFSLLASLLVSITIVPALSSTFFKNGI 532

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
            +    +  +        +           +  +++  
Sbjct: 533 NEKRKRSLGAVGRGYKKVLKWSLNHKWIVLILTTLILI 570



 Score = 91.7 bits (225), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 88/243 (36%), Gaps = 5/243 (2%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            +++      +   +    +   +  ++ Q  ++V   +  +   ++  +     T    
Sbjct: 296 IADVNVGDERESISRTNGKDAIDVQIIKAQDANTVQVKKDTDQKIRQFIKENKGMTYTKI 355

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +       ++ + +A++I +           ++ ++ + +   +    L 
Sbjct: 356 MDTAKPIQDSIYTMLEKAILGTIVAIIIILLFLRNIRTTAISVVSIPMSLLIAMIALKLS 415

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            +  N+  + A+   IG  ++D +VV + + + M      +    L+  +  E     + 
Sbjct: 416 DVSLNILTLGALTVAIGRVIDDSIVVIENIYRRMSDKNEPLKGNQLVISATAEVFKPIMS 475

Query: 775 TSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW--RAK 829
           +++   I  LP+  V G  G +   FA+ + F ++ +   SI I   +    +      K
Sbjct: 476 STLVTIIVFLPLVFVAGSVGEMFRPFALAITFSLLASLLVSITIVPALSSTFFKNGINEK 535

Query: 830 NAR 832
             R
Sbjct: 536 RKR 538



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 93/242 (38%), Gaps = 8/242 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++ +L+      +    + ++   +     D        +++ K      P +   N+ 
Sbjct: 811  KDIATLKETKTPSKLIKEDGDYTTTVTGTISDKDVGGISQKVMSKVNKIHKPDNVKINSG 870

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALF 714
                 I + L +   + +  + I + + + + FK        + +L   +   +    + 
Sbjct: 871  GATDDIQKALTQLS-MAMGAAVIIVYLVLVLTFKGGLAPFTILFSLPYTVIGVVLALVIT 929

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ ++  +L LIG  V + +V+ DR+   +      +  ++ + ++    +   + 
Sbjct: 930  GETLSVPSMIGLLMLIGIVVTNAIVLVDRV---INNEREGMEMKEALIEAGGTRIRPILM 986

Query: 775  TSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++A   +++P+     S I      A  +  G++ +   ++ +   I   ++  + K A
Sbjct: 987  TALATIGALIPLLFGQDSSILISKGLAATVIGGLISSTLLTLIVVPVIYEILFTLKNKLA 1046

Query: 832  RI 833
             +
Sbjct: 1047 HL 1048


>gi|315633572|ref|ZP_07888862.1| RND superfamily acriflavine resistance protein B [Aggregatibacter
           segnis ATCC 33393]
 gi|315477614|gb|EFU68356.1| RND superfamily acriflavine resistance protein B [Aggregatibacter
           segnis ATCC 33393]
          Length = 1032

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/455 (13%), Positives = 139/455 (30%), Gaps = 26/455 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +  F+    +E  +          S R   + IT+    +         V   +  V
Sbjct: 56  ANLIQAFVTSKIEEAVAQADNVDYMSSSSRPSSSSITVKMKLNTDPNAALADVLAKVNSV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +   + ++T     I+      +++   A + +  I R    Q    E    
Sbjct: 116 RSELPSGIEDPTVTSSTGGS-GIMYISFRSNKL--DASQVTDYIQRVVKPQFFTVEGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L    DP ++     +  ++       N           ++   +     
Sbjct: 173 VDIFGASEYALRIWLDPQKMAAQNLSATQVMSALSANNVQTAAGNDNGFYVVYKNKVDTT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   E+S                     +     G +        +I    +      V
Sbjct: 233 TKSVDELS--------------------KLIVYSNGDKLVRLRDIADIELNKSSDNARAV 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +  +  +     E    L   ++          +      A   S    
Sbjct: 273 ANGSDSVVLAVNPTSSANPLTVAEKILPLYESIKNNLPDAIQTDILYDRTVAINNSIEEV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +VL+V+ M +   +  L+   +I +++I  + +L  L  ++ L ++  ++L
Sbjct: 333 VKTIIEATLIVLVVITMFIGSFRAILIPVITIPISLIGVIMMLQTLDFSINLMTLLALIL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E +    +  ++ F +  +G       +    I  +     +   G 
Sbjct: 393 AIGLVVDDAIVVLENVDRHIKLGETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGG 452

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   + FA+T+  ++ IS   A+++   M   +
Sbjct: 453 ITGTLFKEFALTLAGAVFISGIVALTLSPMMTSKL 487



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 63/157 (40%), Gaps = 12/157 (7%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI------EFNLTAVAAV 726
            +++ I + + + I+F+     +  + ++ L I+  L     FG         N+ +   +
Sbjct: 852  VLAVIIIFLVLAIQFESIRDPMVIMISVPLAISGALLALNFFGFIGTAGATLNIYSQVGL 911

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP- 785
            +TL+G      +++ +  ++         S  D I  +    L   + T+ A    ++P 
Sbjct: 912  ITLVGLITKHGILMCEVAKEE--QLNHGRSRIDAITHAAKVRLRPILMTTAAMIAGLVPL 969

Query: 786  MAVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPIL 820
            +   G   +  F++ +    G+ V    ++F+   I 
Sbjct: 970  LYATGAGAVSRFSMGIVIVSGLAVGTLFTLFVLPVIY 1006



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 79/203 (38%), Gaps = 9/203 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K  + + +    + +  +       E+++  I   +I  + + ++I     +   
Sbjct: 301 LYESIKNNLPDAIQTDILYDRTVAINNSIEEVVKTIIEATLIVLVVITMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  + T+ + +   +          NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPVITIPISLIGVIMMLQTLDFSINLMTLLALILAIGLVVDDAIVVLENV---DRHIKL 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGI 474

Query: 811 SSIFIAAPILLFIYDWRAKNARI 833
            ++ ++  +   +    +  +++
Sbjct: 475 VALTLSPMMTSKLLKDHSAPSKL 497


>gi|300853948|ref|YP_003778932.1| putative transporter protein [Clostridium ljungdahlii DSM 13528]
 gi|300434063|gb|ADK13830.1| predicted transporter protein [Clostridium ljungdahlii DSM 13528]
          Length = 1013

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/648 (8%), Positives = 164/648 (25%), Gaps = 34/648 (5%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             +     ++I              P       +            V        +   +
Sbjct: 13  IVLFLVAIVIIGGFYCYSGISKQETPDVASPAAM---------ITTVYPGASSSDIEKLV 63

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               ++    +              + + +   +   ++     +   ++ + S L    
Sbjct: 64  TKKVEQKVEEVDGCDYVESYSESNASIVIIYLNNDADQDKAWRDLRDKVKDLKSDLPNGC 123

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
             + + T   +   I++S +  +         + +I +Q  D    +    +     +  
Sbjct: 124 NDSEINTNLAETAGIIISISGNNYSYQQLGSYADDIKKQLRD----TSGISRIDVKGKQA 179

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            Q+  + D +++ +   + A +       N         +   +       +     +I 
Sbjct: 180 RQVKVQIDWNKINKYQVSVADVCSVLSAQNIDIPSGSLNLVTGKIKVNTPGMFSSLHDIE 239

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                              V       G     +                          
Sbjct: 240 NT-----------------VVGVSSSTGETVRIKDIAKVYMDYDDDSNYKFTDNGQNAVL 282

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                +   +     +        ++                     S S +        
Sbjct: 283 LAGYFQKNKNIVPIGKDITKKLDTIKKQMPKDLTIDEITFQPKDVSDSVSFFMKNLRDGI 342

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            LV++ + + + +    +V    I +++ +T  ++  LG  +   S   +++ +G+ VD 
Sbjct: 343 ILVIVTVLIGMGFRNS-MVVSAVIPISICMTFIIMYALGIKVEQMSTTALIIALGILVDD 401

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRG 487
            I++ + I+    +  +   +   G  + +  +F S +  + A + L       G  ++ 
Sbjct: 402 AIVIGDVIQVGIDEGMTRDEAAFNGIKKLFVPVFTSTLIIVGAFLPLLSISGEVGEFLKS 461

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
               + + ++ S  +A+ +  AM     R  K    +      F  +             
Sbjct: 462 LPQVVIICVICSYLSALFVTPAMSSLFFRKSKESKRENPIRRMFENLLKYGLKHKKTIIG 521

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
             + +  +  I    L          +           +     S +  N+E +      
Sbjct: 522 AALAVFAVALILINTLGMQLFPYVDKNEVYIDVANEKFDDIKSTSKLVKNIEGVLKQQKE 581

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +       +   Y    +V  +  +  +  K+            E
Sbjct: 582 VTAYTSAIGGGMPPFYVTLPTVNPSNDVAQIMVKVDLDKTKKFKTRQE 629



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 40/222 (18%), Positives = 98/222 (44%), Gaps = 10/222 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            +  + +            +   +K+KI  +         +    +IS+     GI GV+I
Sbjct: 798  DRTITVYSDVKSGYNSVDIENALKQKIDGMNLDPVKVIYDGEKAQISKYFTSLGIAGVLI 857

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYS 733
                + I ++++F  +   L  +  L L +   ++G  A FG++ +LTA   V++LIG  
Sbjct: 858  -LAIVYILLFVQFKSFVQPLVIMCALPLSLIGVSIGLHA-FGMDLSLTAFMGVISLIGVV 915

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            + + +++ + +          +S  D    ++++     + +S+A   +++P+A    ++
Sbjct: 916  IRNAILLIEYIN---NGREDGLSVEDACMYAVSQRFRPIILSSVATITALIPLAFSRSAL 972

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFI--YDWRAKNARI 833
             G  ++ M FG++ A   + FI  P++  +       +  ++
Sbjct: 973  FGPMSVAMMFGLLTATFLT-FIVVPVIYSLVNNKLEGRVKKL 1013



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 32/264 (12%), Positives = 85/264 (32%), Gaps = 13/264 (4%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G+    G  + +     V +     +         +     G       +     D   +
Sbjct: 244 GVSSSTGETVRIKDIAKVYMDYDDDSNYKFTDNGQNAVLLAGYFQKNKNIVPIGKDITKK 303

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              ++    K   I  ++              + +R GI+      + + + I + F+  
Sbjct: 304 LDTIKKQMPKDLTIDEITFQPKDVSDSVSFFMKNLRDGII-----LVIVTVLIGMGFRNS 358

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             + A+  +   I  T       GI+    +  A++  +G  V+D +V+ D +       
Sbjct: 359 MVVSAVIPI--SICMTFIIMYALGIKVEQMSTTALIIALGILVDDAIVIGDVI---QVGI 413

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVA 808
              ++  +     I +       +++    + LP+    G V   + S    +   ++ +
Sbjct: 414 DEGMTRDEAAFNGIKKLFVPVFTSTLIIVGAFLPLLSISGEVGEFLKSLPQVVIICVICS 473

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
             S++F+   +    +    ++ R
Sbjct: 474 YLSALFVTPAMSSLFFRKSKESKR 497


>gi|261867129|ref|YP_003255051.1| acriflavine resistance protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412461|gb|ACX81832.1| acriflavine resistance protein [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 1032

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/464 (13%), Positives = 139/464 (29%), Gaps = 26/464 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              V    + + +  F+    +E  +          S     + IT+    +        
Sbjct: 47  VSTVYPGADANLIQAFVTSKLEEAVAQADNVDYMSSSSSPSSSTITVKMKLNTDPNASLA 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  V S+L    +   + ++T     + +S  +       A + +  I R    Q
Sbjct: 107 DVLAKVNSVRSELPKGIEDPTVSSSTGGSGIMYISFRS---GKLDASQVTDYIERVVKPQ 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
               E              L    DP ++     +  ++       N           ++
Sbjct: 164 FFTVEGVASVQIFGASEYALRIWLDPQKMAAQNLSATQVMSALSANNVQTAAGNDNGFYV 223

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
              +      +   E+S                     +     G +        +I   
Sbjct: 224 VYKNKVDTTTKSVYELS--------------------KLIVYSSGDKLVRLRDIADIELN 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            +      V           +  +  +     E    L   ++          +      
Sbjct: 264 KSSDTARAVANGADSVVLAINPTSSANPLTVAEKILPLYENIKNNLPDAIQTDILYDRTI 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A   S      T      +VL+V+ M +   +  L+   +I +++I  + +L  L  ++ 
Sbjct: 324 AINNSIDEVVKTIIEATIIVLVVITMFIGSFRAILIPVITIPISLIGVIMMLQTLDFSIN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  ++L IGL VD  I+V E +    +  ++ F +  +G       +    I  +  
Sbjct: 384 LMTLLALILAIGLVVDDAIVVLENVDRHIKLGETPFRAAIIGTREIAVPVISMTIALIAV 443

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +   G   G   + FA+T+  ++ IS   A+++   M   +
Sbjct: 444 YSPMALMGGITGTLFKEFALTLAGAVFISGIVALTLSPMMTSKL 487



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 54/454 (11%), Positives = 137/454 (30%), Gaps = 19/454 (4%)

Query: 384  GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI-LVNERIREEN 442
            G +  +      +NV    A ++     LT        + I     SN  L    +++ +
Sbjct: 555  GAFLAIGSAPSNVNVDYVQAAMAPYQEILTNTPEVQFAMTISGVPSSNQSLNVVTLKDWS 614

Query: 443  RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
             +++S    L+   ++A S    S        +     G       + + G + L S+  
Sbjct: 615  ERSKSQAQVLEELNNKAKSIPEVSVSGFAFPEINTGEQGPPIGFIISTSQGYNDLASVAG 674

Query: 503  AISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGIS---ILFSIC 559
                        +        D   +                 +      S         
Sbjct: 675  KFLEAMQKSGKFVYTNLDLKFDTAQMHIKIDREKAGTYGITMQQISATLGSFLSAATVER 734

Query: 560  SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
                   + +   +  +  +      N  V  +  +S   S  +             F  
Sbjct: 735  VDIDGRAYKIISQVKRENRLSPESWKNYYVSAANGKSVPLSSLVTMSLEPQPSSLPRFSQ 794

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG-IVGV--IIS 676
                           +    + + +       Q         +R+L+++G  + V  +++
Sbjct: 795  LNSAVISAVPMPGSSIGDAIQWLQDNAQELLPQGYNYDFKGEARQLVQEGNALAVTFVLA 854

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI------EFNLTAVAAVLTL 729
             + + + + I+F+     L  + ++ L I+  L     FG         N+ +   ++TL
Sbjct: 855  VVIIFLVLAIQFESIRDPLVIMISVPLAISGALLALNFFGFIGVAGSTLNIYSQVGLITL 914

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAV 788
            +G      +++ +  ++         +  + I ++    L   + T+ A    ++P +  
Sbjct: 915  VGLITKHGILMCEVAKEE--QLNHGKTRIEAITEAAKVRLRPILMTTAAMIAGLIPLLYA 972

Query: 789  WGGSVIGSFAIPMAF--GIVVAASSSIFIAAPIL 820
             G   +  F+I +    G+ +    ++F+   I 
Sbjct: 973  TGAGAVSRFSIGIVIVAGLAIGTLFTLFVLPVIY 1006



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 79/203 (38%), Gaps = 9/203 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K  + + +    + +  I       E+++  I   II  + + ++I     +   
Sbjct: 301 LYENIKNNLPDAIQTDILYDRTIAINNSIDEVVKTIIEATIIVLVVITMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  + T+ + +   +          NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPVITIPISLIGVIMMLQTLDFSINLMTLLALILAIGLVVDDAIVVLENV---DRHIKL 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGI 474

Query: 811 SSIFIAAPILLFIYDWRAKNARI 833
            ++ ++  +   +     + +++
Sbjct: 475 VALTLSPMMTSKLLKAHDQPSKL 497


>gi|320108746|ref|YP_004184336.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
 gi|319927267|gb|ADV84342.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
          Length = 1082

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/607 (12%), Positives = 176/607 (28%), Gaps = 50/607 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+   ++  +G+   +     ++  D +P                   +V   
Sbjct: 8   LRRPYTFVVFSMLMMLLGIATCI-----EAPKDVYPYINIPV-----------VSIVWSY 51

Query: 61  D--EDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  + G +    +  L + +           Q  + I + F  +   E    ++T 
Sbjct: 52  SGLPPQDMEGRIVTVCERALTTTVNDIEHTQSESYQGVSVIRVFFQPNVKIELALSQITA 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +Q +   L        ++      + IV    +   +     +     +     ++   
Sbjct: 112 IVQTILRNLPPGTFPPNVLKYDASSVPIVQLGLSGKGLSEE--DLYDLGLSFIRPRLANV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E     L     + Q+  + DP+ L     +   +S                       +
Sbjct: 170 EGASVPLPYGGKVRQVQVDVDPNLLYAKHLSATDVSTAF--------------------N 209

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               ++   V   G        N  P     + D+                 +    A  
Sbjct: 210 QQNLILPAGVARMGDREFIVKLNSSPAVVSALNDLPIRATNGAVVLVKDVAQVRLGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
           ++                  + S    ++    +   ++AG  P                
Sbjct: 270 VNVVRQDGKRAALLTVLKNGETSTLDIVKNVKKMIPQVKAGLPPELTITPLFDQSIFVSA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +      +I A L  +++ + +   +  L+   SI L++  +L +L  L  T+ + ++
Sbjct: 330 SINEVVREASIAAALTGLMILLFLGSWRSTLIVCTSIPLSIATSLVILYALHQTINVMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV- 476
            G+ L +G+ VD   +  E       +++ +  ++     +  +  F S +   I  +  
Sbjct: 390 GGLALAVGILVDDATVEIENTHRNMMESKPLVRAILDSAQQVAAPAFVSTLAICIVFMPV 449

Query: 477 --LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK------SIDINPL 528
             L           A+ +  +++ S F + ++V  MM F++  +         +      
Sbjct: 450 VLLSGPARYLFTPLAMAVVFAMMASYFLSRTLVPTMMHFLLGSEIFLYQDPEAAKKEEDE 509

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           +  + +       F R R    G+           +   GL   +       +G      
Sbjct: 510 NWIWRVHSKFDRWFERRRENYKGLLEWALENRGLTVGIFGLFVLLSLPLIFMIGEDFFPY 569

Query: 589 VDLSVVR 595
           VD   +R
Sbjct: 570 VDSGQMR 576



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/164 (18%), Positives = 67/164 (40%), Gaps = 7/164 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +G+I + I + + + + F  W   L  +  L +     L    L G  FN+ ++   +  
Sbjct: 891  IGIIFAIILVYLLMAVNFQSWLDPLLILMALPVAFAGVLWMLFLTGTTFNVPSLMGAIMT 950

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG +  + +++   +  N +  T   S    +       L     T++A  I +LPMA+ 
Sbjct: 951  IGVATANSILLV--VFANDERATGKDSVEAALSAGFTR-LRPVCMTALAMIIGMLPMALA 1007

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               GG         +  G+++A   ++F+   +  ++     +N
Sbjct: 1008 LGEGGEQNAPLGRAVIGGLLLATMGTLFVVPVMYSWLQTKPPRN 1051



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/195 (16%), Positives = 79/195 (40%), Gaps = 7/195 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               +++  VK  +   + ++ + +  I       E++R+  +   ++ + +L+++    
Sbjct: 298 KNVKKMIPQVKAGLPPELTITPLFDQSIFVSASINEVVREASIAAALTGLMILLFLG--- 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L   T++ L I  +L          N+  +  +   +G  V+D  V  +   +NM
Sbjct: 355 SWRSTLIVCTSIPLSIATSLVILYALHQTINVMTLGGLALAVGILVDDATVEIENTHRNM 414

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                S      I  S  +    +  +++A  I  +P+ +  G     F  P+A  +V A
Sbjct: 415 ME---SKPLVRAILDSAQQVAAPAFVSTLAICIVFMPVVLLSGPARYLF-TPLAMAVVFA 470

Query: 809 ASSSIFIAAPILLFI 823
             +S F++  ++  +
Sbjct: 471 MMASYFLSRTLVPTM 485


>gi|146296216|ref|YP_001179987.1| preprotein translocase subunit SecD [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409792|gb|ABP66796.1| protein-export membrane protein SecD [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 415

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 31/168 (18%), Positives = 74/168 (44%), Gaps = 4/168 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E +R  +   II  + + +++ I ++      A   L+  +   +       
Sbjct: 230 AIGPSLGNEALRTTLKAGIIGLLLVFLFMIIFYRLP-GFIADIALVAYVVILVAIVGYAK 288

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I   L  +A ++   G +V+  ++++ RM++ ++      + +  +D      L   + +
Sbjct: 289 ITLTLPGIAGIILSAGMAVDANILIFARMKEELRA---GKTLKAAMDAGFRRALNAVIDS 345

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           ++   I+ L +   G   I  FA  +  GIVV+  ++I +   +L+ I
Sbjct: 346 NITTIIAGLVLLFLGTGPIKGFAWTLTIGIVVSFFTAITVTRFLLVSI 393



 Score =  117 bits (293), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 124/407 (30%), Positives = 215/407 (52%), Gaps = 28/407 (6%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              K  +      K    ++ +   +      +E ++++IR R+D     ++T    GS 
Sbjct: 35  PSVKDVIRYGLDLKGGVYIVYEAAKENPTKREMESAVQLIRTRLDMRNFYDATATLQGSK 94

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI +++PG +DP    Q +G TA + F                             +  +
Sbjct: 95  RIRVEIPGVKDPDEAIQYIGRTALIEF--------------------------KGPQGDL 128

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +SG  +    A         VV + F++ G ++F E TR  +G+ + + LDG++++ P 
Sbjct: 129 IVSGRDVVD--AYAQQTAAGYVVALKFNKEGTKKFAEGTRKYLGQNIGIYLDGKLISNPT 186

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           + + I +G+A I G   +E A  LA  ++AG+LP  LN+VE R +G  LG++++     A
Sbjct: 187 VEEEITNGEAIIRGMKDLEEAKTLAQQIKAGALPFALNVVESRAIGPSLGNEALRTTLKA 246

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + GL+L+ LFMI+ Y   G +AD ++   V++ +A++     TLTLP IAGI+L  G+A
Sbjct: 247 GIIGLLLVFLFMIIFYRLPGFIADIALVAYVVILVAIVGYAKITLTLPGIAGIILSAGMA 306

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+NIL+  R++EE R  +++  ++D GF RA + + DSNIT +IA +VL F G G ++G
Sbjct: 307 VDANILIFARMKEELRAGKTLKAAMDAGFRRALNAVIDSNITTIIAGLVLLFLGTGPIKG 366

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           FA T+ + I++S FTAI++ R +++ II     K +      +   +
Sbjct: 367 FAWTLTIGIVVSFFTAITVTRFLLVSIINTGFFKDMRWYGGKKTREV 413



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 41/120 (34%), Gaps = 4/120 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+N      L + +        +   L        PS   K+ I  GLDL+GG ++V E 
Sbjct: 1   MQNRSLAQFLIASLIIAFAFYIVFFGLNIGTAS-IPSV--KDVIRYGLDLKGGVYIVYEA 57

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
            +++     ++     +R+ L        +     + +I +     +  +     +    
Sbjct: 58  AKENPTKREMESAVQLIRTRLDMRNFYDATATLQGSKRIRVEIPGVKDPDEAIQYIGRTA 117


>gi|303252218|ref|ZP_07338386.1| acriflavine resistance protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307247561|ref|ZP_07529605.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649001|gb|EFL79189.1| acriflavine resistance protein [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306855926|gb|EFM88085.1| Uncharacterized transporter [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 1039

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/565 (10%), Positives = 157/565 (27%), Gaps = 38/565 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL       + +  +  +P                   +     
Sbjct: 9   KRPVLAVCISLLITILGL-----QSINKLQVREYPEMTISIVT---------VKVNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +E  +          S     +  T+    +   +     ++  +  
Sbjct: 55  DASLMQALVTSQIEEAVAQADNIDYVTSSSGPSSSTTTIKMKLNTNPQMALADISAKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L        +  ++    +++  +   D++     + +  I R    Q        
Sbjct: 115 IRANLPSGIDDPSISVSSGSNDALMYIRFVSDEL--STPQITDYINRVVKPQFFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP ++     + A +       N +         +    +  + 
Sbjct: 173 SVDIFGAANFGLRIWLDPDKMAGNNLSGAAVLSALSANNLNTAAGNANGYYTVYKNKVES 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  + ++                        R         +           
Sbjct: 233 STPSVEELENVTIST-------------------TSDGRIVKLKDIAKVELDKYQDASRA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +           S     +     +    +  ++           +      A   S + 
Sbjct: 274 IADGKEAVVLAVSAATTANSLTVAKDIYPVFDLITKNLPSSVNGQIMYDKTVAINSSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL V+ + +   +  +V   +I +++I  L  L + G ++ L ++  +V
Sbjct: 334 VIKTIGEATVIVLAVIILFLGSLRAMIVPIITIPISLIGVLFFLQMFGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ ++ F +  +G       +    IT       +    
Sbjct: 394 LAIGLVVDDAIVVLENVERHVKEGKTPFDAAIIGTREIALPVISMTITLAAVYSPMALME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  ++ IS   A+++   M   +++    ++ +        ++    
Sbjct: 454 GVTGSLFKEFALTLAGAVFISGIAALTLSPMMSSRVLKEHNEENENRFSKCINTMLDKMT 513

Query: 539 AIQFMRARFWGVGISILFSICSICL 563
           A      R       ++        
Sbjct: 514 ACYTNMLRGVMSVRWLVVIFAMSIF 538



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 80/217 (36%), Gaps = 14/217 (6%)

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +L       V  + + + V     E+              +  + +     + +  +   
Sbjct: 798  QLNSATISGVVSSSIGDAVNWAKAELDRSLPQGYQYDFKSEARQYVQEGNAMAMTFALAV 857

Query: 680  MLIYI--WIRFK-WYFALGAITTL------ILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            ++IY+   I+F+ W   +  + ++       L +   LG   + G   N+ +   ++TL+
Sbjct: 858  VIIYLVLAIQFESWRDPMVILVSVPLALSGALVVLNVLGIAGIAGATLNIYSQVGLVTLV 917

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVW 789
            G      +++ +  ++        +S  D I  S    L   + T+ A    ++P+    
Sbjct: 918  GLITKHGILMCEVAKEE--QLHNGLSRFDAIVHSATIRLRPIMMTTAAMVAGLIPLLFAM 975

Query: 790  GGSVIGSFAIPMAF--GIVVAASSSIFIAAPILLFIY 824
            G   I  F++ M    G+ +    ++F+   I  F+ 
Sbjct: 976  GAGAIARFSMGMVIVAGLSIGTLFTLFVLPVIYTFLG 1012



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 73/187 (39%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           V +++ K +   V    + +  +       E+I+      +I    +++++         
Sbjct: 303 VFDLITKNLPSSVNGQIMYDKTVAINSSINEVIKTIGEATVIVLAVIILFLG---SLRAM 359

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +  I T+ + +   L F  +FG   NL  + A++  IG  V+D +VV + +    +    
Sbjct: 360 IVPIITIPISLIGVLFFLQMFGFSINLLTLLALVLAIGLVVDDAIVVLENV---ERHVKE 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
             +  D       E     +  ++       PMA+  G        FA+ +A  + ++  
Sbjct: 417 GKTPFDAAIIGTREIALPVISMTITLAAVYSPMALMEGVTGSLFKEFALTLAGAVFISGI 476

Query: 811 SSIFIAA 817
           +++ ++ 
Sbjct: 477 AALTLSP 483


>gi|113952990|ref|YP_730715.1| cation efflux system protein czcA-1 [Synechococcus sp. CC9311]
 gi|113880341|gb|ABI45299.1| cation efflux system protein czcA-1 [Synechococcus sp. CC9311]
          Length = 1034

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 82/713 (11%), Positives = 198/713 (27%), Gaps = 66/713 (9%)

Query: 5   PWLVIL-YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            WLV+L   +I   G+L  +     Q  LD FP   P               + ++    
Sbjct: 17  RWLVVLCSLVISVWGVLNVV-----QMPLDVFPPFAPP-------------QVEIQTAAP 58

Query: 64  DFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 ++       +   + L    +   + +   + + + F D+   ++    V+  L
Sbjct: 59  GLTPEQVERQISEPIEAAVNGLPGVNVVRSASKPGLSMVQVVFRDASKLQSARQLVSERL 118

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQ--VISHAIEQSMEIIRQRIDQIGIS 177
           Q V  +L        +        +++     + +        +    +     + +   
Sbjct: 119 QQVLPQLPTTADAPEISPPLSPLGTVLQYAFTLPESAPTDQQFQLRSLVQTTYENALLAI 178

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q       L +   + +   L Q     + +           +             
Sbjct: 179 PGVAQVTIYGGDLPETQVQLNLKALLQQNLALSDVVEATRDAQFKGR------------- 225

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                    V+I+G                 +   +      +         I    A+ 
Sbjct: 226 -------GGVQIAGGQERLILPPTSSTASADLERAAMSSSTGQIIALGDVAEIRPGAAMR 278

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                  A      + + +  +      +        L A      +     R       
Sbjct: 279 RGEATFNAKPAVVLMINKQPDVDTPRLTKAVEERVKQLNASLPKDVVVTQSFRQAEFIDI 338

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      +  +   +V  VL + ++  +  ++   +I L++++ L L+  LG  L   ++
Sbjct: 339 AIRNVSESLLLGVVIVAAVLLLFLMNWRTAVITLSAIPLSLLVGLLLMRGLGLQLNTMTL 398

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITAL 471
            G+V+ IG  VD  I+  E      R+N      Q+    +          +  S +  +
Sbjct: 399 GGLVVAIGSVVDDAIVDMENCYRGLRRNKQLPSPQNPLEVVFRTSVEVRQPVLFSTLIIV 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           +    +F      G       I   LSI+ S   A+++  A+   ++    +        
Sbjct: 459 VVFAPVFTLTGVEGRIFMPMGIAYVLSIVASTLVALTLSPALCALLLSRTPLP----VDN 514

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           S      + +    +          +  ++ S+          G  F    +   L N  
Sbjct: 515 SWVERSAERLYKPILNLALTTPRRVLALALASVVAAVLILPGLGRVFLPEFREQALLNSM 574

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V    V   + S     +S +    +    ++++       A    + +    +      
Sbjct: 575 VLYPGVSLEMTSRAGTVLSERLQSSDDVDWIQVRSGRAPGDADGAGVNIAHVDLELSDQA 634

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
              +         +   IRK  + +   A  +  +I  R  +    + +   +
Sbjct: 635 MADR-------TSAIARIRKAFLALPGVAPNIGGFISHRMDEVLSGVRSAIAI 680



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 65/160 (40%), Gaps = 6/160 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            I  V+ + +   + +     W      +  L L +   L    L G   ++ ++   +TL
Sbjct: 871  IYSVLAAVVIAFLMVIAVRSWPATAAILVNLPLALVGGLVAVLLSGGVLSVASLIGFITL 930

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
             G +V + +++ D      + + +     +LI     E L   + T++ + + +LP+A+ 
Sbjct: 931  FGVAVRNGLLLVDNFN---RRHQSGEPLMELIRNGSLERLNAILMTALTSSLGMLPLALA 987

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               G  ++   AI +  G++ +   ++ +   +      W
Sbjct: 988  FGAGNEILQPLAIVVLGGLITSTLLTLVVIPALYARYGRW 1027



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 86/254 (33%), Gaps = 9/254 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +     + + L  V        +              L+  +    D+   T+ +E   K
Sbjct: 255 MSSSTGQIIALGDVAEIRPGAAMRRGEATFNAKPAVVLMINKQPDVDTPRLTKAVEERVK 314

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML-IYIWIRFKWYFALGAITT 699
           ++   +P   +        +     IR     +++  + +  + +     W  A+  ++ 
Sbjct: 315 QLNASLPKDVVVTQSFRQAEFIDIAIRNVSESLLLGVVIVAAVLLLFLMNWRTAVITLSA 374

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MRKNMKLYTTSI 755
           + L +   L      G++ N   +  ++  IG  V+D +V  +     +R+N +L +   
Sbjct: 375 IPLSLLVGLLLMRGLGLQLNTMTLGGLVVAIGSVVDDAIVDMENCYRGLRRNKQLPSPQN 434

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSS 812
               +   S+ E     +++++   +   P+    G     F    I     IV +   +
Sbjct: 435 PLEVVFRTSV-EVRQPVLFSTLIIVVVFAPVFTLTGVEGRIFMPMGIAYVLSIVASTLVA 493

Query: 813 IFIAAPILLFIYDW 826
           + ++  +   +   
Sbjct: 494 LTLSPALCALLLSR 507


>gi|319763407|ref|YP_004127344.1| heavy metal efflux pump, czca family [Alicycliphilus denitrificans
           BC]
 gi|317117968|gb|ADV00457.1| heavy metal efflux pump, CzcA family [Alicycliphilus denitrificans
           BC]
          Length = 1039

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/557 (11%), Positives = 146/557 (26%), Gaps = 49/557 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L  +M+   G+       +  + +D  P       I                  
Sbjct: 12  NRFLVLLATAMLTAWGVW-----GVRSTPVDALPDLSDVQVI---------IRTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGFSFFGDSFVYVLFEDGTDLYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    K  L    T                 +   +           ++    +  +
Sbjct: 118 QGRLPATAKPALGPDATGVGWIFQY-ALVDRTGKNDLAQLRALQDWFLKFELKSLPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L     +  ++    V                     NQ  
Sbjct: 177 VASVGGMVKQYQVVIDPIKLASHGLSQGQVRDALVN-------------------ANQET 217

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +E+SG       + +                G              P        +
Sbjct: 218 GGSVLELSGAEYMVRASGYLKSLEDFRAVPLVARGGVPVRLGDVATLQVGPEMRRGIAEL 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   ++  +   TI       A L+A        +           +    
Sbjct: 278 DGEGEVAGGIVILRSGKNAQQTIAAVKAKLAELQASLPQGVEIVTTYDRSALIERAIRNL 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  ++ L V+    ++   G    + S+ GI +
Sbjct: 338 ATKLGEEFLVVALVCLLFLWHLRSALVAIIALPLGVMTAFLVMHYQGINANIMSLGGIAI 397

Query: 423 GIGLAVDSNILVNERIR-----------EENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            +G  VD+ +++ E              ++  + +  +  +          +F S +   
Sbjct: 398 AVGAMVDAAVVMIENAHKKLEAWQHAHPDQRLQGEERWEVITQAAEEVGPALFFSLLIIT 457

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++  +   +++++  +M + IR +          
Sbjct: 458 LSFIPVFTLEAQEGRLFGPLAFTKTYAMAAAAGLSVTLIPVLMGYWIRGRIPDEQKNPIT 517

Query: 529 SRFFLIPDCIAIQFMRA 545
                +        +R 
Sbjct: 518 RMLIAVYRPSLEWVLRW 534



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 91/261 (34%), Gaps = 15/261 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       L V       +   D   +   G          Q   +  + ++ E+   
Sbjct: 254 VPVRLGDVATLQVGPEMRRGIAELDGEGEVAGGIVILRSGKNAQQTIAAVKAKLAELQAS 313

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               +  ++T   + ++   I     + G   ++++ +  L+++W       AL AI  L
Sbjct: 314 LPQGVEIVTTYDRSALIERAIRNLATKLGEEFLVVALVC-LLFLW---HLRSALVAIIAL 369

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-- 758
            L +          GI  N+ ++  +   +G  V+  VV+ +   K ++ +  +   +  
Sbjct: 370 PLGVMTAFLVMHYQGINANIMSLGGIAIAVGAMVDAAVVMIENAHKKLEAWQHAHPDQRL 429

Query: 759 ------DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAA 809
                 ++I ++  E      ++ +   +S +P+          F   A    + +  AA
Sbjct: 430 QGEERWEVITQAAEEVGPALFFSLLIITLSFIPVFTLEAQEGRLFGPLAFTKTYAMAAAA 489

Query: 810 SSSIFIAAPILLFIYDWRAKN 830
             S+ +   ++ +    R  +
Sbjct: 490 GLSVTLIPVLMGYWIRGRIPD 510



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 85/284 (29%), Gaps = 18/284 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L  V     +     +  +N     
Sbjct: 762  LARFPINLRYPREWRDSPQRLAQLPISTPVGQQITLGTVARIAITDGPPMLKSENARPSG 821

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V ++ +   SVA      + ++   E               + +  L     V V  
Sbjct: 822  WVYVDVRGRDLASVANELRDAIGRQVKLEPGVSIAYSGQFEYMERANARLK----VVVPA 877

Query: 676  SAIAMLIYIWIRFKWYFALGAITT-LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + + +++ F      G I   L   +T  + F  L     ++      + L G + 
Sbjct: 878  TLLTIFVLLYLTFSRLDEAGLIMATLPFALTGGIWFLYLMNYNLSIATGVGFIALAGVAA 937

Query: 735  NDKVVVY--------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               VV+         +R     +   T     + I +     +     T       ++P+
Sbjct: 938  EFGVVMLIYLKHALDERCPDGRR--PTQEELLEAIREGAVLRVRPKAMTVAVILAGLVPI 995

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                  G  V+   A PM  G+V A   S+F+     + +   R
Sbjct: 996  VWGSGTGSEVMSRIAAPMLGGMVTAPLLSLFVIPAAYVLMRKPR 1039


>gi|259503258|ref|ZP_05746160.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Lactobacillus antri DSM 16041]
 gi|259168776|gb|EEW53271.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Lactobacillus antri DSM 16041]
          Length = 709

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/593 (11%), Positives = 178/593 (30%), Gaps = 58/593 (9%)

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
           ++          +         A  +   + +           AA               
Sbjct: 105 HVDFVTNPYQSKQFSKDLTTTYATVTYNQKANSVTPETIHKTQAAFKSLDHQKGVQVEYT 164

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                  +G + I +     +A + +++LF   +     +++        +L + + S  
Sbjct: 165 GTVSIHPMGVNEIAELIGVAIAFIFMVILFRSFITAGLPIISAVIGLAIGLLVIGIGSNY 224

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI 468
             T ++     ++L +   +D  + +  R R           ++ M  + A S++  + +
Sbjct: 225 FETASVAQSLAMILSLACGIDYALFIINRYRTNRVTEDDHIKAIGMAMATAGSSVLFAGV 284

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           T +IA   L   G   +    +   + +  ++ +A++++ A++  + ++ +  +      
Sbjct: 285 TVIIAVAGLSLVGIDFLTQMGLAAAVGVAFAILSALTLLPALISLVHKHIRPANNQTGKH 344

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG-------------------- 568
            +       +    +R  F  V +S L  +                              
Sbjct: 345 KQKAKNNGLVEHTIIRHPFVTVIVSALVLLGFAIPSGHMRLGMPYNGALPTNQTERKAYD 404

Query: 569 ---LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF----------DGEK 615
                +G      +      ++       + ++  +       +             G+ 
Sbjct: 405 ILSDKFGEGMNAQLITVAKLDKNATPDEKQQDVMEITKHLSEMKYVKMATPGMMSNSGKY 464

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              + +  +  +SV   ++   +KK           +        I+ +++ K    + I
Sbjct: 465 AVFMVIPTEGPESVKTDQLAHHIKKYSNTTEDKMNTKLVLTGTNAINIDIVEKLNKAIPI 524

Query: 676 ------SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA----------LFGIE-- 717
                 +   +L+ I  R  +   L A+    L +  + G             +FGI   
Sbjct: 525 FAGIVMALAFVLMMIVFR-SFIIPLVAMAGFGLSLLASFGALTAVMQDAVLNTVFGISKG 583

Query: 718 ---FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                   V A+  L G +++ +V +  R+R+   +Y  +      +   + E     + 
Sbjct: 584 APIIAFLPVIAIGILFGLAMDYEVFLVSRIRE---IYLLTGDNTKAVRTGMKENAKVIIT 640

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +         A+       S  + +AFG+   A     I  P ++ +    
Sbjct: 641 AGLIMISVFGSFAITSNPTSKSIGLALAFGVFFDAFIVRLIFVPAMIKLCGKW 693



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 24/244 (9%), Positives = 79/244 (32%), Gaps = 7/244 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               +  +  + +++ +     S Q           + Y    +      +   +     
Sbjct: 93  ITNSIANAEKKPHVDFVTNPYQSKQFSKDLTTTYATVTYNQKANSVTPETIHKTQAAFKS 152

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL---GAITTLI 701
           +     +Q        I    + +    + ++   + + I  R      L    A+  L 
Sbjct: 153 LDHQKGVQVEYTGTVSIHPMGVNEIAELIGVAIAFIFMVILFRSFITAGLPIISAVIGLA 212

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
           + +   +G  + +    ++    A++  +   ++  + + +R R N     T       I
Sbjct: 213 IGLL-VIGIGSNYFETASVAQSLAMILSLACGIDYALFIINRYRTNR---VTEDDHIKAI 268

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             ++       ++  +   I+V  +++ G   +    +  A G+  A  S++ +   ++ 
Sbjct: 269 GMAMATAGSSVLFAGVTVIIAVAGLSLVGIDFLTQMGLAAAVGVAFAILSALTLLPALIS 328

Query: 822 FIYD 825
            ++ 
Sbjct: 329 LVHK 332


>gi|209527235|ref|ZP_03275746.1| acriflavin resistance protein [Arthrospira maxima CS-328]
 gi|209492302|gb|EDZ92646.1| acriflavin resistance protein [Arthrospira maxima CS-328]
          Length = 897

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/485 (11%), Positives = 135/485 (27%), Gaps = 30/485 (6%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   + +  +   + L    +   S +   + + + F            VT  LQ V
Sbjct: 30  PEEVEAQITVPIESAVNGLPSVTLVRSSSKVGLSMVHVVFDQEADIYQARQAVTERLQQV 89

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNID-QVISHAIEQSMEIIRQRIDQIGISESTI 181
            S+L        +        +I+     ++ Q  +  ++    +     +QI       
Sbjct: 90  MSQLPQGIHPPEISPLVSPLGTILQYAFTVNGQGETSLMDLRRLVDVTLRNQILSVPGVS 149

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         +     DP  LR    +  +++                        G   
Sbjct: 150 QVTIYGGDEREEQILVDPQLLRSRQVSLNEVAAAAR--------------------GANS 189

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                  + G             T + +                    +    A+     
Sbjct: 190 NAPGGFLVGGGQELLIRGIGQVNTLEDLQQSVVKVQYGEPILLQDVAEVKTGAALKRGDA 249

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + + +  I      +    +   L++   P        R       +   
Sbjct: 250 SFNGQPAVVLMINKQPDIDTPTVTQAVEAVMNSLQSTFPPDVEVQRTFRQSNFIDSAIRN 309

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G+      +V +++ + ++  +  ++   +I L++++ L  L  +G  +   ++ G+V
Sbjct: 310 VSGSLIQGIIIVSVIMLLFLMNWRTAIITLSAIPLSLLIGLMFLKAVGLGINTMTLGGLV 369

Query: 422 LGIGLAVDSNILVNERIREENRKNQSV------FCSLDMGFSRAYSTIFDSNITALIATV 475
           + IG  VD  I+  E      R+N +       F  +     +    +  S +  ++   
Sbjct: 370 VAIGSVVDDAIVDMENCYRGLRRNPTQENPKPPFQVVYDTSVQVRLAVIFSTVIIIVVFA 429

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G           LSI  S   A+++  A+   ++ + ++            
Sbjct: 430 PIFSLTGVEGRIFAPMGWAYLLSIAASTLVAMTLSPALCAILLAHHRLPQEGTFISRLAE 489

Query: 533 LIPDC 537
                
Sbjct: 490 SWYRP 494



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 83/258 (32%), Gaps = 7/258 (2%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           ++      + V    P+ L  V        +              L+  +    D+   T
Sbjct: 214 LEDLQQSVVKVQYGEPILLQDVAEVKTGAALKRGDASFNGQPAVVLMINKQPDIDTPTVT 273

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWY 691
           + +E V   +    P                  IR     +I   I + +I +     W 
Sbjct: 274 QAVEAVMNSLQSTFPPDVEVQRTFRQSNFIDSAIRNVSGSLIQGIIIVSVIMLLFLMNWR 333

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            A+  ++ + L +   L F    G+  N   +  ++  IG  V+D +V  +   + ++  
Sbjct: 334 TAIITLSAIPLSLLIGLMFLKAVGLGINTMTLGGLVVAIGSVVDDAIVDMENCYRGLRRN 393

Query: 752 TTSISFR---DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGI 805
            T  + +    ++  +  +     +++++   +   P+    G     FA         I
Sbjct: 394 PTQENPKPPFQVVYDTSVQVRLAVIFSTVIIIVVFAPIFSLTGVEGRIFAPMGWAYLLSI 453

Query: 806 VVAASSSIFIAAPILLFI 823
             +   ++ ++  +   +
Sbjct: 454 AASTLVAMTLSPALCAIL 471


>gi|317475456|ref|ZP_07934720.1| AcrB/AcrD/AcrF family protein [Bacteroides eggerthii 1_2_48FAA]
 gi|316908484|gb|EFV30174.1| AcrB/AcrD/AcrF family protein [Bacteroides eggerthii 1_2_48FAA]
          Length = 706

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 83/675 (12%), Positives = 196/675 (29%), Gaps = 39/675 (5%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           ++   ++   G  IA+   +        P+ +     +       G          + V 
Sbjct: 2   LVASVLLLIGGTYIAMHTEVDVFPDLNAPTVVIMTEAN-------GM-------AAEEVE 47

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   +          S     + + + F            V+  L  V+  L 
Sbjct: 48  QLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWETDVYLARQIVSEKLAVVSESLP 107

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            +  K  L   +     +++     D      ++           ++  +    Q     
Sbjct: 108 SNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQVAVLG 165

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + +   + DP R+R    T  ++       N +  G       +    GN+Y+V   +
Sbjct: 166 GDIKEYQIQLDPERMRHYGVTLTEVMNATREMNLNANGG------VLYEYGNEYIVRGVI 219

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
               +     TA             +          ++    IG  L  +        P 
Sbjct: 220 STDRVEQLAKTAVKLQGGDTSSASPASTPDVPVLLEDIADVRIGAKLPKLGTASERGKPA 279

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   +    A  +   T +    L  + +     +K++    R       S    + +  
Sbjct: 280 VLLTVTKQPATSTLELTDKLETSLKDLQKNLPPDVKVSTDIFRQSRFIESSIGNVQKSLF 339

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
                V+IVLF+ +   +  +++  ++ L++I +L  L  +G T+   S+ G+ + IG  
Sbjct: 340 EGGIFVVIVLFLFLANVRTTVISLVTLPLSLIASLLALHYMGFTINTMSLGGMAIAIGSL 399

Query: 428 VDSNILVNERIREENRKNQSVFC--------SLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VD  I+  E + +  R+N+             +          I +S +  +++ V LFF
Sbjct: 400 VDDAIVDVENVYKRLRENRMKPQEERRPILEVVFNASKEVRMPILNSTLIIVVSFVPLFF 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G  +    I   +++  S   A+++   +  +++  +K+K    +          
Sbjct: 460 LSGMEGRMLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKIKDEKRSTGDSPVARKM 519

Query: 537 CIA------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                          +    G   LF I   C             +G   + + +   + 
Sbjct: 520 KEWYGAALTFVLGHKKSVLGGTIGLFVIALACFFTLGRSFLPPFNEGSFTINISSLPGIS 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L          +   ++            R +            +E   +          
Sbjct: 580 LEESDKIGHRAEELLLTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSRSELV 639

Query: 651 IQNTEIVGPKISREL 665
            +  E +G  +   +
Sbjct: 640 AEVREKLGTIVGANV 654



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 78/221 (35%), Gaps = 12/221 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +T + ++ K    ++   + I             + +    G I   I +
Sbjct: 290 TSTLELTDKLETSLKDLQKNLPPDVKVSTDIFRQSRFIESSIGNVQKSLFEGGIFVVIVL 349

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++         + ++ TL L +  +L      G   N  ++  +   IG  V+D +V 
Sbjct: 350 FLFLA---NVRTTVISLVTLPLSLIASLLALHYMGFTINTMSLGGMAIAIGSLVDDAIVD 406

Query: 740 ---VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
              VY R+R+N MK         +++  +  E     + +++   +S +P+    G    
Sbjct: 407 VENVYKRLRENRMKPQEERRPILEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGR 466

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
           ++    I     +  +   ++ +   +    +   + K+ +
Sbjct: 467 MLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKIKDEK 507


>gi|226312473|ref|YP_002772367.1| efflux system [Brevibacillus brevis NBRC 100599]
 gi|226095421|dbj|BAH43863.1| putative efflux system [Brevibacillus brevis NBRC 100599]
          Length = 1039

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/635 (11%), Positives = 174/635 (27%), Gaps = 45/635 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN+  ++I+  +I   G++ A+        ++  P       +          +     
Sbjct: 9   LRNSTAIIIMSLLIVVSGIIAAM-----SLKVENMPDITFPVLL---------VNTTYPD 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +     +              + + +        + + D++   + 
Sbjct: 55  ASPEDVLDDVTKPLEREVGHVTGVKAVESYSSNNSSTLQVYLETGSDVQAVRDELERKIS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L     +  ++        +           S       ++    + ++   ES 
Sbjct: 115 SI--ALPSKVNRPQVMIQGFSNQPVYYLFVTGQDKESGVDHFDNDVKETVLKELEGIESV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +         ++        L     +  ++    +  + +                  
Sbjct: 173 DKVSTIGGQFKEMKILPKVDALNYYGISPLQLKQLLLDNHVALPIGSITEDGEERIIRVV 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
               +  +I    +                 +  D      +  +          VV   
Sbjct: 233 SRYLNVDDIRNTKIF----------------LPSDPTNGLTYVRLGDIAEVNFDEVVNSI 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +   T +      + L+     +               S +
Sbjct: 277 SRYNGKNGININIYKTRDANAVETGDAINAKLSRLKEEYPDLTFTT-IYDTSVDIKNSIN 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  + A +  +V+   + + K  L+   SI  +++++L  +S +G TL + ++ G+
Sbjct: 336 GMLKEGLLGAIMASVVILFFLRHVKATLIVLVSIPTSILVSLIFMSWMGITLNMITLFGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIATVVLFF 479
            + +G  VD +I+V E I    + N+    + + +        I  S  T     + + F
Sbjct: 396 AVAVGRVVDDSIVVIENIFRHLQLNKERKENLIQIATHEMLHAITSSTFTTTAVFLPIVF 455

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
            GG      R FA+T+  S+  S+  A++IV  +   +I        +            
Sbjct: 456 VGGMIGEVFRPFALTVVCSLFASLLVAVTIVPLLAKLMILKDHNIK-EHEQGKGSDTYRK 514

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR-------PV 589
            +     R    G    +LF      L +     +       I   V   +         
Sbjct: 515 LLQWSLNRKPAVGFLSLVLFVASLALLPYMKYGLFPDPEAKYIFAQVTMPKGTQLDGLDQ 574

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
            ++ + S L      +    N   E    +R   Q
Sbjct: 575 TVAQIESKLMEQPEVEYIEINLGSENEAEIRQSNQ 609



 Score = 86.7 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 85/249 (34%), Gaps = 9/249 (3%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
              +      VR    +    +        +             S  +      +   +  
Sbjct: 762  YIQTPSKQQVRLVDFAEIDQEKVQSQIMRKDEKQFVQITADITSDNKGGASNFLFAMLQA 821

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                + +  +         +  +  ++ +  +   + I + I F    A  AI  L L +
Sbjct: 822  EKLPAGVTLSSEGVSSDMEKSFKDMLLAIGAAIFIVYIVMLITFGNATAPLAIL-LSLPL 880

Query: 705  TKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                G F LF      ++TA+   L L+G  V + +V  D +    +      S R+ + 
Sbjct: 881  AVIGGLFGLFVSDTVLDITALIGFLMLVGIVVTNAIVYVDNI---QQRRLEGTSMREAVV 937

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            ++    +   + T++A   ++LP+ +    G  +  S AI +  G+V +   ++F+    
Sbjct: 938  EAGVTRVRPIIMTAVATVSALLPLYLGFSEGALMTKSLAIVVIGGLVTSTILTLFVVPIG 997

Query: 820  LLFIYDWRA 828
               +Y  + 
Sbjct: 998  YELLYRIKK 1006



 Score = 83.6 bits (204), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 89/234 (38%), Gaps = 9/234 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + +   ++ +   +        +   + +  ++V     +     ++ E  P  T    
Sbjct: 264 IAEVNFDEVVNSISRYNGKNGININIYKTRDANAVETGDAINAKLSRLKEEYPDLTFTTI 323

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I   +      G++ + +A ++ ++        L  + ++   I  +L F +  
Sbjct: 324 YDTSVDIKNSINGMLKEGLLGAIMASVVILFFLRHVKATLIVLVSIPTSILVSLIFMSWM 383

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           GI  N+  +  +   +G  V+D +VV + + ++++L        +LI  + +E L     
Sbjct: 384 GITLNMITLFGMAVAVGRVVDDSIVVIENIFRHLQLNKERK--ENLIQIATHEMLHAITS 441

Query: 775 TSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           ++       LP+   G   G V   FA+     +V +  +S+ +A  I+  +  
Sbjct: 442 STFTTTAVFLPIVFVGGMIGEVFRPFALT----VVCSLFASLLVAVTIVPLLAK 491


>gi|260906456|ref|ZP_05914778.1| cation/multidrug efflux pump [Brevibacterium linens BL2]
          Length = 1226

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 49/552 (8%), Positives = 140/552 (25%), Gaps = 42/552 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  +I   G++               P                   + +  
Sbjct: 9   LKNRLIVGLLTLVIAVFGVIATTSLNQETMPSVELPGTS--------------VQVTVPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +     +        +         +++   +  E + D V   + 
Sbjct: 55  ASPEVVEESVTKPIETALEGVGDLETVSTTSSAGSMSANVTWPFGKDAEEMTDSVRSAVD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L    +  +L    +    ++ + +  +   +        +  + + ++      
Sbjct: 115 SAKADLPDGAEAEVLSQQIDDVPVVMFAVSGGEDSQT----LGDLVETELVPELQGVAGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                + +   ++     P  +      T  +                            
Sbjct: 171 SSVDVAGQNEQRVNISFRPDDVNDKNVVTTSVPDELTAAGTVVPAGQSADGN------KS 224

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             VE   E+  +     T                              ++          
Sbjct: 225 LSVEVGDELDAVDQIEKTP---------------LRTADGTVLLGEVADVELDSVDKTSY 269

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        +     +          +   +                      S  
Sbjct: 270 SRADGKDAVTVSVTKGQDDNVVEVSHGVNEVIERMGPELGDDISFSTIFDQAPEIEKSIH 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +     ++V+   +   +  +VA  SI +++++ +  L +   TL + ++  +
Sbjct: 330 DLSVEGGLGLFFAILVILAFLGSFRSTVVAAISIPMSLLIAMIGLMVGEYTLNILTLGAL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            + +G  VD +I+V E IR     +      +     +    I  S +T +   + + F 
Sbjct: 390 TIAVGRVVDDSIVVIENIRRRQGASDLTIDDIVASVKQVAGAITASTLTTVAVFLPIAFV 449

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G   R F++T+ L++L S+  A++IV     +++R            +        
Sbjct: 450 DGIAGQLFRPFSVTVTLALLGSLLVALTIVPVFSYWVLRKSPKPLSPKRQAATDASYEAW 509

Query: 538 IAIQFMRARFWG 549
                 +     
Sbjct: 510 ARKHREKGIKRA 521



 Score = 86.7 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 88/242 (36%), Gaps = 6/242 (2%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V    L+S+     S  +        V              V E++++   E+    + 
Sbjct: 255 EVADVELDSVDKTSYSRADGKDAVTVSVTKGQDDNVVEVSHGVNEVIERMGPELGDDISF 314

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                  P+I + +    + G +    A+L+ +     +   + A  ++ + +   +   
Sbjct: 315 STIFDQAPEIEKSIHDLSVEGGLGLFFAILVILAFLGSFRSTVVAAISIPMSLLIAMIGL 374

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
            +     N+  + A+   +G  V+D +VV + +R   +   + ++  D++  S+ +  G 
Sbjct: 375 MVGEYTLNILTLGALTIAVGRVVDDSIVVIENIR--RRQGASDLTIDDIV-ASVKQVAGA 431

Query: 772 SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              +++      LP+A      G +   F++ +   ++ +   ++ I      ++     
Sbjct: 432 ITASTLTTVAVFLPIAFVDGIAGQLFRPFSVTVTLALLGSLLVALTIVPVFSYWVLRKSP 491

Query: 829 KN 830
           K 
Sbjct: 492 KP 493



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 86/241 (35%), Gaps = 9/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              + S+   +        + N  V +   P +        +  +   +  +P     +  
Sbjct: 958  DEIASVDETETPATVTREDGNRQVTVFATPAEGQLNPVSAKAQELTSSMDLPDGVSFDVG 1017

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                + +    + G   ++++   + + +   F+ +   L  + ++    T  +    L 
Sbjct: 1018 GASQEQADSFAQLG-WAMLVAIALVFLVMIATFRSFVQPLILLVSIPFAATGAVLLLLLT 1076

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G    + ++  +L LIG  V + +V+ D +    KL    +   D I       L   + 
Sbjct: 1077 GTPLGIPSLIGLLMLIGIVVTNAIVLIDLVN---KLREHGMGLWDAIIHGTRLRLRPILM 1133

Query: 775  TSMAAFISVLPM---AVWGGSVI-GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            T+ A   +++PM      GG  I    AI +  G+  +   ++ +   + L +   + + 
Sbjct: 1134 TAAATVFALVPMSLGLTGGGVFISQPLAIVVIGGLTSSTVLTLILVPALYLLVERRKERR 1193

Query: 831  A 831
            A
Sbjct: 1194 A 1194


>gi|299132568|ref|ZP_07025763.1| heavy metal efflux pump, CzcA family [Afipia sp. 1NLS2]
 gi|298592705|gb|EFI52905.1| heavy metal efflux pump, CzcA family [Afipia sp. 1NLS2]
          Length = 1061

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 73/563 (12%), Positives = 158/563 (28%), Gaps = 37/563 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
             LD  P       I          +          V   +          + K  +   
Sbjct: 34  LPLDAIPDLSDTQVI---------VYTEYSGQAPQVVEDQVTYPLATAMLTVPKSKVVRG 84

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
                 + + + F D         +V  FL G   +L       +    T        + 
Sbjct: 85  FSFFGVSFVYVIFEDGTDIYWARSRVLEFLNGAAPRLPSGVTPTIGPDATGVGWVYQYAV 144

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
            + +  ++                +  +    +   +   + Q     DP R+R    T 
Sbjct: 145 VSKELNLADTRAIQD---WNLKFALAKAGGVAEVASAGGFVRQYNVVLDPQRMRDRGITM 201

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
            KM       N    G    +         +  ++D  ++                    
Sbjct: 202 QKMRDAIRASNADVGGRTVELSEFEYVIRGRGYIKDINDLG------------------- 242

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
             +   + G              P        +     +   I   +  ++    I    
Sbjct: 243 NIVLKTDNGTPVLLRDVARVELGPDERRGITELNGEGEVTSGIILQRFGLNALDVINNVK 302

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                + +        +           + +  K T    + +V +V  + +L+ +  LV
Sbjct: 303 ERFKEIASSLPKSVEIVPVYDRSTLINAAIATLKHTLFEESIIVALVCIVFLLHVRSALV 362

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR---KNQ 446
           A   + + +++    + LLG    + S+ GI + IG  VD+ I++ E   +        Q
Sbjct: 363 AILMLPVGILMAFGAMKLLGIGSNIMSLGGIAIAIGAMVDAAIVMIENAHKRLERAVPGQ 422

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTA 503
           S    L    S     +F S +   ++ + +F      G      A T   S+  +   +
Sbjct: 423 SRLQILIDAASEVGPALFFSLLIITVSFMPIFTLESQEGRLFSPLAFTKTFSMAAAALLS 482

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +++V A+M+  +R + +             I   +    MRA+   + +++     +I  
Sbjct: 483 VTLVPALMVIFVRGRIIPEHKNPINRFLIWIYRPVIKGVMRAKMLVILLALAILAVTIWP 542

Query: 564 LFTHGLNYGIDFKGGIQLGVLAN 586
               G  +  D   G  L +   
Sbjct: 543 ARQLGTEFMPDLNEGTLLYMPTT 565



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/159 (18%), Positives = 64/159 (40%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + ++  + +R     AL AI  L + I    G   L GI  N+ ++  +   IG
Sbjct: 343 SIIVALVCIVFLLHVR----SALVAILMLPVGILMAFGAMKLLGIGSNIMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+  +V+ +   K ++      S   ++  + +E      ++ +   +S +P+     
Sbjct: 399 AMVDAAIVMIENAHKRLERAVPGQSRLQILIDAASEVGPALFFSLLIITVSFMPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRLFSPLAFTKTFSMAAAALLSVTLVPALMVIFVRGR 497



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 51/144 (35%), Gaps = 13/144 (9%)

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV-------YDRM---RK 746
            + +L   +   L      G   ++      + L G +    VV+       Y  +   R 
Sbjct: 891  MLSLPFSLVGGLWLMWWLGFNLSVAVAVGFIALAGVAAETGVVMLIYLNHAYSEIETKRA 950

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
              +   T     D + +   E +   + T +A    +LP+      G  ++   A+PM  
Sbjct: 951  AERRAVTRADLYDAVMEGAVERVRPKMMTVVAIMAGLLPIMWSTGTGSEIMQRIAVPMIG 1010

Query: 804  GIVVAASSSIFIAAPILLFIYDWR 827
            G+V +   ++ +   I   I  +R
Sbjct: 1011 GMVSSTLLTLVVIPAIFGLIKGFR 1034


>gi|330975883|gb|EGH75949.1| preprotein translocase subunit SecD [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 373

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/281 (25%), Positives = 132/281 (46%), Gaps = 19/281 (6%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + L    P +L                + LGLDL GG H +LEVD D  ++  L++Y
Sbjct: 103 VVALNLARTTPTWLRNLGAS---------PMKLGLDLSGGVHFLLEVDMDKAIDARLKVY 153

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             E++S L+KE +   S+ Q+ N I L F D   +E     V             +    
Sbjct: 154 EGEVKSLLRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFE-ITPAELNGI 212

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            ++        + L+   + ++  ++I+Q++  +R R++++G++E  +QR G++RI+++L
Sbjct: 213 PVLR-------MALTPAKLAEIREYSIKQNLTTVRNRVNELGVAEPLVQRQGANRIVVEL 265

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
           PG QD +  +++LG TA + F      +        +   R+       VE  + I+G  
Sbjct: 266 PGVQDTAEAKRILGKTANLEFRLGAGPDD-SKGTTEMFEFREGGRPAAAVERGLIITGDQ 324

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
           +  A A+FD    +P V+I+ D  G       TR N+G+ +
Sbjct: 325 VTDAKASFDEHG-RPQVNINLDGHGGELMSRATRSNVGRSM 364



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/255 (10%), Positives = 67/255 (26%), Gaps = 33/255 (12%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W  +L   +  +G + + PN  P     +   A    +++             + D
Sbjct: 4   KYPLWKYVLILAVLVVGFIYSAPNLYPDDSAIQISGASTALQVN-------------QAD 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL-Q 120
            D                      +   S+ +      L  +    +    D V   L  
Sbjct: 51  VDRAAKALADA----------GISVKASSLAENGKGGLLRLSKQEDQLPAKDVVRKALGD 100

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQI 174
                LN+       +         +    +       +  +  AI+  +++    +  +
Sbjct: 101 DYVVALNLARTTPTWLRNLGASPMKLGLDLSGGVHFLLEVDMDKAIDARLKVYEGEVKSL 160

Query: 175 GISESTIQR---LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
              E    R      + I +    + +  + R L+  T           N        + 
Sbjct: 161 LRKEKVRYRSLPQLGNVIQLGFTDDAEREQARALVRKTFTDFEITPAELNGIPVLRMALT 220

Query: 232 FLRDSDGNQYLVEDK 246
             + ++  +Y ++  
Sbjct: 221 PAKLAEIREYSIKQN 235


>gi|186474676|ref|YP_001863647.1| acriflavin resistance protein [Burkholderia phymatum STM815]
 gi|184198635|gb|ACC76597.1| acriflavin resistance protein [Burkholderia phymatum STM815]
          Length = 1017

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/664 (9%), Positives = 172/664 (25%), Gaps = 46/664 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                 ++  +I  +GL       L    +  +P               G   +      
Sbjct: 10  RPVLASVVSLLILVLGL-----RSLSALKVGEYPQTE-----------NGVVTITTSYYG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D + GF+    +   +  +       +     + IT +   +        ++   + 
Sbjct: 54  ASADTMAGFITQPLESAIAQAQGIDYMSSTSSTGVSTITATLRLNYDSNRALTEINTQIA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V ++L    ++ +L     +    +      D + S+ +  +  ++R    ++   +  
Sbjct: 114 SVRNQLPPQAQQPVLTVQVGQTTDAMYMGFYSDVLPSNNV--TDYLLRVVKPKLDSIQGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    D +RL     T A +S      N                    
Sbjct: 172 QMAEILGGRQFALRAWLDSNRLAAHNVTAADVSTALGNNNYLATLGTTK------GQMIS 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    ++               +      +   +            N+          
Sbjct: 226 VDLNAGTDL--------------HSVDDFKKLVVKQKNGAIVRLEDVANVVLGADNYNFN 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              +               +     +    +   L+          +          +  
Sbjct: 272 VAFSGKRSVFIGIKVAPDANVLDVAKRVKTIFPDLQKQFPTGMTGDIVYDATDFINTAID 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      +V +V+F+ +   +  +V   ++ L++I T  ++ L G ++ L ++  +
Sbjct: 332 EVVKTLVEALLIVTVVIFLFLGSFRAVIVPVIAMPLSLIGTFFVMQLFGYSINLLTLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +      + +    +  +        I    +  +   + + F
Sbjct: 392 VLAIGLVVDDAIIVVENVDRHMKEEGKQPLEAALIAARELGGPILAMTVVLVAVYLPIGF 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK--MKSIDINPLSRFFLI 534
            G   G     FA T+  ++ +S   A+S+   M     R  +   +           + 
Sbjct: 452 QGGLTGALFTEFAFTLAGAVTVSGVIALSLSPMMCSRFFRTDQESGRFARFVDRQFERVH 511

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                +       W V I +   +    +         +  +    + +   +    + +
Sbjct: 512 RGYGRLLHAMLDTWPVFIVMGALLLCGTVYLFTTSKSELAPQEDQGIVLSQIQGPPNATI 571

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           +             +                 +      + +   K+      L      
Sbjct: 572 QQMQTYADQVFDISKQLPEYSQMFQLTGAPTLNQGYGGVLFKTWDKRKRGATQLQKELQQ 631

Query: 655 EIVG 658
           +  G
Sbjct: 632 KWDG 635



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 84/233 (36%), Gaps = 6/233 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V + +      + +         F+        + +   + ++ +   + +  P 
Sbjct: 253 VRLEDVANVVLGADNYNFNVAFSGKRSVFIGIKVAPDANVLDVAKRVKTIFPDLQKQFPT 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
               +            I + +  ++ + + + + I++    +   +  +  + L +  T
Sbjct: 313 GMTGDIVYDATDFINTAIDEVVKTLVEALLIVTVVIFLFLGSFRAVIVPVIAMPLSLIGT 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                LFG   NL  + A++  IG  V+D ++V + +  +  +        +    +  E
Sbjct: 373 FFVMQLFGYSINLLTLLALVLAIGLVVDDAIIVVENV--DRHMKEEGKQPLEAALIAARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G  +  ++      LP+   G   G++   FA  +A  + V+   ++ ++ 
Sbjct: 431 LGGPILAMTVVLVAVYLPIGFQGGLTGALFTEFAFTLAGAVTVSGVIALSLSP 483



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/160 (11%), Positives = 68/160 (42%), Gaps = 9/160 (5%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI-EFNLTAVAAVL 727
            ++ ++ + I + + +  +F+ +   +  + ++ + +   L  F   G+   N+     ++
Sbjct: 849  VITLLFATIIVFLALAAQFESFRDPVVILVSVPMALFGAL-IFINVGLSTLNIYTQVGLV 907

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            TL+G      +++     +  +        R+ ++++    L   + T+ A  + VLP+ 
Sbjct: 908  TLMGLVSKHGILIVQFANELQRA---GRGKREALEEAAGVRLRPILMTTAAMVLGVLPLV 964

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            +    G +   +  + +  G+ +    ++F+   + + + 
Sbjct: 965  IASGAGAAGRHAMGLVIFSGLSIGTLFTLFVVPAMYMLLG 1004


>gi|326801053|ref|YP_004318872.1| heavy metal efflux pump, CzcA family [Sphingobacterium sp. 21]
 gi|326551817|gb|ADZ80202.1| heavy metal efflux pump, CzcA family [Sphingobacterium sp. 21]
          Length = 1459

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/685 (10%), Positives = 185/685 (27%), Gaps = 62/685 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   + I    +   G+  A      +  +D  P                   ++    
Sbjct: 11  KNKLIVGIFTFALIVWGVWSA-----TKLPIDALPDITNNQ-----------VQIITSAP 54

Query: 62  E--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 +   +    +   + + +        R   + IT+ F +         ++   +
Sbjct: 55  SLAAQEIERLVTFPIELSVATIPQMIEIRSISRFGLSVITVVFKEKVDIYWARQQIAERI 114

Query: 120 QGVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           +   S++     +     + T   +    ++      +      +           Q+  
Sbjct: 115 KEAQSQIPPGIGEPKLGPITTGLGEIYQYIIHPRPGAEKRYSPTDLRTMQDWIVARQLYG 174

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           +    +      IL Q      P RL+    T A++       N +  G     +     
Sbjct: 175 TPGVAEVNSFGGILKQYEVAVRPDRLQAYNITIAEVFTALQNNNENTGGAYIDKKPNAYY 234

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
             +  L     +I  I +                    D  G     +            
Sbjct: 235 IRSLGLARSLTDIGNIVIK------------------KDSKGVPILIKDVSSPQFGGAIR 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +    ++        ++       +            
Sbjct: 277 YGALTYNGEREAVGGVVMMLKGSNSAEVVKLVKEKMRTIQKSLPKDIVIEPYLDRTNLVN 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +    K      A +V++VL + +   + GL+   +I L+++   +++++ G +  L S
Sbjct: 337 RAIDTVKSNLIEGALIVILVLVLFLGNLRAGLIVASAIPLSMLFAFSMMNIFGVSANLMS 396

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFC-------------SLDMGFSRAYSTI 463
           +  I    GL VD  +++ E         +S F              ++ +  S A+  I
Sbjct: 397 LGAI--DFGLIVDGAVIIVEATMHHFGLRKSAFRLNQDEMDDHVFDSAVKIRSSAAFGEI 454

Query: 464 FDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
               +   I  + L    G   +  A T+  +I+ ++  +++ V  M    +  K ++  
Sbjct: 455 II--LMVYIPILALTGIEGKMFKPMAQTVSFAIIGALILSMTYVPMMCALFLSKKPIQKK 512

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF---KGGIQ 580
             +    + L      +     R     +S    +          +         +G   
Sbjct: 513 TFSDRLMYKLQRFYTPLLKKALRAPYWILSFTLLLFGGSAYLFSRMGAEFIPQLKEGDFA 572

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  +   LS    ++ +        + FD  K  + +       +         +  
Sbjct: 573 FQCVLPQGASLSQ---SIGTSMKAAKILKTFDEVKMVVGKTGSAEVPTDPMPPEATDLMV 629

Query: 641 KITEIVPLSTIQNTEIVGPKISREL 665
            +       + ++ E +   + + L
Sbjct: 630 ILKNQSEWKSDRSYEQLATDMEKAL 654



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 97/241 (40%), Gaps = 6/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L +++  D   Q    +    + + +       Q+ V ++  K   E+        T 
Sbjct: 801  SQLANIEFKDGPAQISRDDAKRRIVVGFNIVGRDVQSVVDDIKNKIDEEVKLPDGYFYTF 860

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +  +E   + ++ V ++ + + + ++  F     ++   T + +     +    L 
Sbjct: 861  GGQFENLQEAKSRLLIAVPLALLLIFVLLFFTFGSTKESVLIFTAIPMSAIGGIIALKLR 920

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             + F+++A    + L G +V + +V+       +K        R +++ S++  L   + 
Sbjct: 921  DMPFSISAGVGFIALFGVAVLNGIVLISTFN-QLKKAGQGNILRRILEGSLSR-LRPVLM 978

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T+ AA +  LPMA+    G  V    A  +  G+V A   ++F+   +    Y ++ ++ 
Sbjct: 979  TATAASLGFLPMAISTGSGAEVQKPLATVVIGGLVTATLLTLFVLPILYFLFYSFKLRSP 1038

Query: 832  R 832
            +
Sbjct: 1039 K 1039



 Score = 46.2 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 58/171 (33%), Gaps = 16/171 (9%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + I +L+ +         L   + + L +        +FG+  NL ++ A+    G 
Sbjct: 347 IEGALIVILVLVLFLGNLRAGLIVASAIPLSMLFAFSMMNIFGVSANLMSLGAI--DFGL 404

Query: 733 SVNDKVVVYD--------R---MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            V+  V++ +        R    R N       + F   +    +   G  +   +  +I
Sbjct: 405 IVDGAVIIVEATMHHFGLRKSAFRLNQDEMDDHV-FDSAVKIRSSAAFGEIII--LMVYI 461

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +L +    G +    A  ++F I+ A   S+     +       +    +
Sbjct: 462 PILALTGIEGKMFKPMAQTVSFAIIGALILSMTYVPMMCALFLSKKPIQKK 512


>gi|40062958|gb|AAR37828.1| efflux transporter, RND family, outer membrane subunit, putative
           [uncultured marine bacterium 443]
          Length = 1031

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/516 (12%), Positives = 155/516 (30%), Gaps = 44/516 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + ++  +I   G +           +   P                         
Sbjct: 19  KRPWLVAVMNLLIAIAGFVAIF-----AIEVRELPDVDQPVV---------NVRANFPGA 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        +  +  ++I   F  +   +  A  V   +  
Sbjct: 65  SPETMDSEVTRILEGAVARVSGVKEVNSNSEEGSSRIRAVFNTNADVDRAAADVREAVSR 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  + ++  +  + E    I+      D V     + +  + R  +          
Sbjct: 125 VQRQLPENVEQLAVFKSDEDAEEIMRIAVLADGVSEQ--DLATIVERDVVPAFISLPGVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L  E DP R+     T   +               F             
Sbjct: 183 DVPLFGSRRQILRVELDPGRMSTYGLTVTDIRTVLSQAPLDVPAGSFKTSDQTLLVRADA 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ + +I  + +                          +        +           
Sbjct: 243 AVDSEEDIGNLLITD------------------------KIRLRDVARVAYTPDDATSVV 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +       +A  +     E A    A        IKL ++         G+ S 
Sbjct: 279 RLNGQKVLGVGVVRQAGSNTIQISEGARKAIAQFNTQRDDIKLQVIS-DEAVFINGAVSE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++ + +     ++ +V   +I ++++ TLA    LG ++ + ++  +V
Sbjct: 338 VVRTLGFAVIIVILTIRLFSGSWRFTIVPAIAIPISLLGTLAASWALGFSINILTLLALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L  GL VD  I+V E ++   +K +    +  +G    +  +  + +  +   V + F  
Sbjct: 398 LATGLIVDDAIVVLESVQRRQQKGEGASAAAVLGTQSVFFAVIATTMVLVAVFVPIAFLP 457

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G +    + F + + +++ IS F A+S+V A+M  +
Sbjct: 458 GTSGRLFKEFGLVLTVAVAISSFVALSLVPALMARL 493



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/223 (12%), Positives = 69/223 (30%), Gaps = 7/223 (3%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           S    +G+K   V +  Q G +  Q                                  +
Sbjct: 276 SVVRLNGQKVLGVGVVRQAGSNTIQISEGARKAIAQFNTQRDDIKLQVISDEAVFINGAV 335

Query: 667 RKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            + +  +  + I +++ I      W F +     + + +  TL      G   N+  + A
Sbjct: 336 SEVVRTLGFAVIIVILTIRLFSGSWRFTIVPAIAIPISLLGTLAASWALGFSINILTLLA 395

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           ++   G  V+D +VV + +    +                       + T+M      +P
Sbjct: 396 LVLATGLIVDDAIVVLESV---QRRQQKGEGASAAAVLGTQSVFFAVIATTMVLVAVFVP 452

Query: 786 MAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +A   G+       F + +   + +++  ++ +   ++  +  
Sbjct: 453 IAFLPGTSGRLFKEFGLVLTVAVAISSFVALSLVPALMARLGK 495



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/170 (16%), Positives = 65/170 (38%), Gaps = 9/170 (5%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVA 724
            R       ++ + + + +  +F+   +   +   I+        FALF  G   N+ +  
Sbjct: 850  RDSFYAYGLALLIVFLVLVAQFESLTS-SLVIMTIVPFGLAAAIFALFITGNSLNVYSQV 908

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ LIG    + +++ +      +      S RD I+ + N  L     T ++  +  L
Sbjct: 909  GLVMLIGLIAKNGILLVEFA---DQRRDAGASVRDAIEDAANIRLRPIAMTLISTVLGAL 965

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+ +    G     +    +  G+ + A  ++F+   I L +  +    A
Sbjct: 966  PLILSSGPGSEAREAVGWVVFGGLGLTAIFTLFLTPVIYLALARFSKPRA 1015


>gi|254495762|ref|ZP_05108676.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
 gi|254355040|gb|EET13661.1| conserved hypothetical protein [Legionella drancourtii LLAP12]
          Length = 1057

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/537 (11%), Positives = 154/537 (28%), Gaps = 37/537 (6%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEVDEDDFVNGF 69
            ++  + LLI  P  + ++  D FP                   +V        D +   
Sbjct: 14  FIVLGLMLLIIGPLAIMRTPTDIFPDINIPV-----------VSVVWSYTGLPPDEMADR 62

Query: 70  LQMYSDELRSF-LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
           +    +   +  +              +   L F      +    +VT   Q +   L  
Sbjct: 63  ITSVFERAVTTTVNDIEHIESESLIGVSVTKLFFHPGVRIDIALSQVTAISQTMLKNLPP 122

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                L+++     + ++    +   +       +         Q+   +          
Sbjct: 123 GTLPPLILSYKASTVPVLQLVLSSATIPEQ--RLNDLANNFLRSQLATVQGAAVPYPYGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            + Q+  + D   ++    +  +++      N         +                  
Sbjct: 181 KIRQIQVDLDLQAMQTYGISPQQVNATIDAQNLIIPAGTQKI------------------ 222

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
             G +      N  P +   + D+       R  +     ++    A   +   +     
Sbjct: 223 --GEYEYIVRLNGSPLSVDELNDLPIKATPGRVLYIRDVAHVRDGFAPQTNIVRVDGQRA 280

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                      S    I     L   ++                     +         I
Sbjct: 281 VMMSIQKTGNASTLDIINQIKALLPKVKEILPEGLNLSKFADQSIFVTSAIQGVIVEGMI 340

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            A L  +++ + +   +   +   SI L++I ++ +LS LG T+ + ++ G+ L +G+ V
Sbjct: 341 AAALTGLMILLFLGSLRSTFIITLSIPLSIIASITILSALGETINIMTLGGLALAVGILV 400

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D   +  E I     + + V  ++  G  +       S +   I  V +FF GG A   F
Sbjct: 401 DDATVAIENINWNLEQGKEVEQAILDGAKQIAVPALVSTLCICIVFVPMFFLGGVAQYLF 460

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
            + +  +++ +M  +  + R ++  + +Y   K                +   F + 
Sbjct: 461 -VPLAEAVIFAMLMSYILSRTLVATLAKYLLHKHDLSGEKPASTNRFVRLHEAFEKK 516



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 75/237 (31%), Gaps = 8/237 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R                  +    V +  Q   + +   ++  +K  + ++  +     
Sbjct: 256 IRDVAHVRDGFAPQTNIVRVDGQRAVMMSIQKTGNASTLDIINQIKALLPKVKEILPEGL 315

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAM----LIYIWIRFKWYFALGAITTLILDITKTLG 709
                   S  +       ++   IA     L+ +              ++ L I  ++ 
Sbjct: 316 NLSKFADQSIFVTSAIQGVIVEGMIAAALTGLMILLFLGSLRSTFIITLSIPLSIIASIT 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             +  G   N+  +  +   +G  V+D  V  + +  N+            I     +  
Sbjct: 376 ILSALGETINIMTLGGLALAVGILVDDATVAIENINWNL---EQGKEVEQAILDGAKQIA 432

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             ++ +++   I  +PM   GG     F +P+A  ++ A   S  ++  ++  +  +
Sbjct: 433 VPALVSTLCICIVFVPMFFLGGVAQYLF-VPLAEAVIFAMLMSYILSRTLVATLAKY 488



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/258 (13%), Positives = 85/258 (32%), Gaps = 8/258 (3%)

Query: 579  IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
              L + +        +   +  +     +          ++ +     D        ++ 
Sbjct: 795  HNLPIGSLTVPSQVQILGAMSKVTRAWTAVVESHYNVQPVIDIFASIQDRDLGAVAKDIQ 854

Query: 639  KKKITEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRF-KWYFALGA 696
            K        L    +  I G   +++    G+  G+  S + + + I I F  W      
Sbjct: 855  KIINDMKKELPKGSSVAIRGQIDTQQHAFSGLYWGLAFSILLVYLLIVINFQSWTDPFII 914

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            IT L   +        L     ++ A+   +  +G +  + +++    R ++     + +
Sbjct: 915  ITALPAALAGIAWMLFLTHTTLSVPALTGAIMCMGVATANSILIISFARDHIA---HTPN 971

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
                  ++    L   + T+ A  I +LPMA+    GG         +  G+  A  +++
Sbjct: 972  PYVAALEAGRARLRPVLMTASAMVIGMLPMALGLGDGGEQNAPLGRAVIGGLSFATIATL 1031

Query: 814  FIAAPILLFIYDWRAKNA 831
            F    +   I++ + +  
Sbjct: 1032 FFVPCVFYVIHERKLRAK 1049



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 50/540 (9%), Positives = 133/540 (24%), Gaps = 41/540 (7%)

Query: 11   YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
              + C +  +      L   +   F   +   +I L +    G+ +       D ++  +
Sbjct: 537  VFIPCFLAFVFISLLLLWPWLGSDFFPNVDAGQIKLHIRAPTGTRVEETARLVDEIDTVI 596

Query: 71   QMYSDELRSF---------LKKEGIGVFSMRQIQ---NKITLSF-----ADSRFKENIAD 113
            +                  +    +   +   +      I +S          +   +  
Sbjct: 597  RRVIPPAELETIVDNIGLPVSGINLSYSNSATVGPEDADILISLKEKHKPGPDYVRELRA 656

Query: 114  KVTLFLQGVN-SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
             +      V+ + L  D    ++       I+I +     ++   +A         + I 
Sbjct: 657  ILNNKFPSVSVAFLPADIVNQIINFGLPSPINIQIIGLKQEENTLYA--------NKMIK 708

Query: 173  QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
            ++                  +        L   LG T    F             F    
Sbjct: 709  RLKQVPGLADIRTRQANNYPVFFVDVDRSLASELGFTQ---FDIASDLLIALSGSFQTSP 765

Query: 233  LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                D    +    V  +  ++  +           +   S  ++            + +
Sbjct: 766  TFWLDPKNGVSYPIVTQAPQYVMDSLQALHNLPIGSLTVPSQVQILGAM------SKVTR 819

Query: 293  PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                V++      PVI+         +          I                 +    
Sbjct: 820  AWTAVVESHYNVQPVIDIFASIQDRDLGAVAKDIQKIINDMKKELPKGSSVAIRGQIDTQ 879

Query: 353  GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                          A    LV +++ +         +   ++   +     +L L   TL
Sbjct: 880  QHAFSGLYW---GLAFSILLVYLLIVINFQSWTDPFIIITALPAALAGIAWMLFLTHTTL 936

Query: 413  TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            ++P++ G ++ +G+A  ++IL+    R+      + + +           +  +    +I
Sbjct: 937  SVPALTGAIMCMGVATANSILIISFARDHIAHTPNPYVAALEAGRARLRPVLMTASAMVI 996

Query: 473  ATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
              + +      GG         +   +  +    +  V  +   I   K           
Sbjct: 997  GMLPMALGLGDGGEQNAPLGRAVIGGLSFATIATLFFVPCVFYVIHERKLRAKTKQRNEH 1056


>gi|209516253|ref|ZP_03265111.1| acriflavin resistance protein [Burkholderia sp. H160]
 gi|209503364|gb|EEA03362.1| acriflavin resistance protein [Burkholderia sp. H160]
          Length = 1079

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/636 (10%), Positives = 161/636 (25%), Gaps = 49/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  +I       A P  L  + +D  P                   ++   
Sbjct: 8   LKRPYTFIVMAILIVL-----ATPFVLFTTPVDVLPEINIPV-----------VSIIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           +        +      +        +                + L    +   +    + 
Sbjct: 50  NYSGLSAEDMANRITSVNERSLTTTVNDIEHIESQSLPGIAILKLFLQPNANIQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    ++       L+++ +   I ++    +  ++   A   +   +     Q+ 
Sbjct: 110 VAVEQAQLRQMPPGATPPLVISYSASSIPVIQLGLSSPKLSEQA--LNDTALNFLRPQLV 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + D   L     T + +       N         +     
Sbjct: 168 TIPGAAVPYPYGGKSRLISVDLDTRALLAKGLTPSDVVSAFNAQNLILPTGTAKIGPKEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +            +                     DI    +     +     ++    +
Sbjct: 228 TINMNGSPPTVEGL--------------------NDIPVRTVNGATTYLREVAHVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    ++T   L    R+   P              
Sbjct: 268 PQTNIVRQNGHRGVLISVLKNGNASTLSIVDTLKGLLPTARSALPPDLQITALFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             + +       + A L   ++ + +   +   +   SI L+++ +L  L  LG T+ + 
Sbjct: 328 KAAVAGVVREAVVAAALTAAMILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHMGTNLHDAILDGAGEIAVPALVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + ++ +         P     
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYILSRTLVPTLAMLLMGHAHKPKAGTRPNL-LM 506

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +       F R R   + I     +              +       LG      VD  
Sbjct: 507 RLYHRFDAGFERMRAAYIMILSNLLVRRKMFGSLFLGFCVLSMGLLFTLGEDFFPRVDAG 566

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            VR ++ +     I       ++   V  +  P   
Sbjct: 567 NVRLHMRAPTGTRIEETARLADEVEKVIREVVPPKD 602



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/168 (16%), Positives = 66/168 (39%), Gaps = 9/168 (5%)

Query: 671  VGVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +GV ++   +L+Y+ I      W   L  ++ L   +   +    L G   ++ A+   +
Sbjct: 883  LGVGVAMAIVLVYLLIVVNFQSWVDPLIIVSALPAALAGIMWMLFLTGTHLSVPALTGAI 942

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              +G +  + +++    R+ +              ++    +   + T+ A  I ++PMA
Sbjct: 943  MTMGVATANSILMVAFARQRLAA---GAPPLTAALEAGASRIRPVLMTAFAMIIGMIPMA 999

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +    G          +  G++ A  S++F    +   I+ W A+  +
Sbjct: 1000 LGLGEGAEQNAPLGRAVIGGLLFATVSTLFFVPLVFAGIHSWLARRQK 1047



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +     W        ++ L I  +L      G   N+  +  +   +G  V+D  V  
Sbjct: 348 MILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIMTLGGLALAVGILVDDATVTI 407

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           + +    +      +  D I     E    ++ +++   I  +PM    G     F +P+
Sbjct: 408 ENI---ERHLHMGTNLHDAILDGAGEIAVPALVSTLCICIVFVPMFFLTGVARYLF-VPL 463

Query: 802 AFGIVVAASSSIFIAAPILLFI 823
           A  +V A  +S  ++  ++  +
Sbjct: 464 AEAVVFAMLASYILSRTLVPTL 485


>gi|262373657|ref|ZP_06066935.1| cation efflux system protein czcA [Acinetobacter junii SH205]
 gi|262311410|gb|EEY92496.1| cation efflux system protein czcA [Acinetobacter junii SH205]
          Length = 1054

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/688 (9%), Positives = 168/688 (24%), Gaps = 61/688 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  W+++       +G+         +  +D  P                   +  + +
Sbjct: 24  RNAIWVMLFVMTWIAVGIWS-----YQKLPIDAVPDITNTQ-----------VQINTQAN 67

Query: 62  EDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +   + +          R   +++T+ F D          +   L
Sbjct: 68  GYTALEVEQRITYPIETAMAGIPNLEQTRSISRYGLSQVTIIFKDGTDIYWARQLINQRL 127

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH------AIEQSMEIIRQRIDQ 173
           Q  + +L       +   +T                         A++           Q
Sbjct: 128 QEADGQLPDAVDPLMSPVSTGLGEIYQWVIKAKPDAKKEDGTPYTAMDLREIQDWIVRPQ 187

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   +               D  RL+QL  +  +        N ++          
Sbjct: 188 LQRVKGVAEINSIGGYNKTYIVSPDLKRLQQLQISLTEFQTALQENNENRGAGFIEENGQ 247

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           + +     ++    +I                     +I+                +   
Sbjct: 248 QLTVRVPGMLSTVEDIQ--------------------NITVSVKNGLPIRVADIATVAIG 287

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +               I       +     +        +++                
Sbjct: 288 HDLRTGAATYNGEETVLGIAMMMMGENSRTVAQAVDAKIQEIQSTLPKGVEIETVYDRTS 347

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +    +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  
Sbjct: 348 LVNKAIKTVQKNLVEGAILVIVILFVFLGNFRAALITACVIPLSMLFTLTGMAEQNISAN 407

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR----------AYSTI 463
           L S+  +  GI   VD  +++ E       + Q     L     R          A   +
Sbjct: 408 LMSLGALDFGII--VDGAVVIVENCIRRLAEAQHHAGRLLTRRERFKEVFLAAKQARKPL 465

Query: 464 FDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
                  ++  + +F   G         A+T+ +++L +M  +++ V A +   I  +  
Sbjct: 466 LFGQAIIIVVYLPIFALTGVEAKMFHPMAMTVVMALLGAMILSVTFVPAAVALFITGEVK 525

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +       +        +   +            +  +  +              +G   
Sbjct: 526 EKESRWMQALKRKYQQILDWAYQFKMVVVTLAVSILVLTGVLTTQIGSEFAPQLSEGDFA 585

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L  + +    L       E+ +      +NF   K    R       +      +     
Sbjct: 586 LQQMRSPSTGLEQSLRMQENTEKL--ILKNFSEVKAVFARTGTAEVATDVMPPNISDAVI 643

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRK 668
            +         + T        +  +  
Sbjct: 644 LLKPRDQWENPKETIDELRTRMQAFLEN 671


>gi|162146924|ref|YP_001601385.1| multidrug resistance protein mdtC [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785501|emb|CAP55072.1| puitative multidrug resistance protein mdtC [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1108

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/676 (10%), Positives = 163/676 (24%), Gaps = 42/676 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE--V 60
                 ++   +   GL            +   P+                 ++V     
Sbjct: 10  RPVATTLISLALVIAGLFA-----YRALPVGDLPNISVPI-----------IYVVATQPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    +     +                I L+F DSR  +  A+ V   L+
Sbjct: 54  SSPQQMATSVTTPLERRLGQISGISAIESDSTDSTAFILLTFDDSRNIDGAANDVQAALR 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                +    +            + ++    +        +    +       +   +  
Sbjct: 114 AATQDMPATLQMVPQYWKANPADNPIMI-MALTSDTRPMADLYDVMKTHLQPMLSQIKGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      +  E +P  L +       +       N +       V   R S    
Sbjct: 173 GWIEITGSSAPAVRVEMNPYPLFKYGIGFEDIRSALASANANTPKGFVDVGPQRYSISTN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                  +      D+     G+R        ++   +      
Sbjct: 233 --------------------DQARHAADYRDLVVGYRGSRPVRLTDVASVVDGVEDERQT 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                     AI   +   +    ++        +                      S +
Sbjct: 273 GYFNGHRAVMAIVRPQPGANVIRVMDEIKARTPAIIGALPRGMTLTPAMDRSITIRASLA 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  I   LV+ V+ + +   +  L+   ++ +++  TLA + LLG +L   S+  +
Sbjct: 333 DTQLTLLISVLLVVGVVLVFLRAPRSTLIPAVTVPISLAGTLAAMYLLGFSLDTLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I+V E I            +  +G      T+    I  +   + L   
Sbjct: 393 TIATGFVVDDAIVVVENIARHMEAGMDRRAASMLGAGEIAFTVLSITIALVAVFLPLLLM 452

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G   +    FA+T+ +++ IS+F +IS+   M   ++       +          +   
Sbjct: 453 PGTPGKIFYEFAMTLAVTVGISLFLSISLTPMMCSLLLDVAHGAPLPAGASRTRRALRRL 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                                      +               + ++    +    V   
Sbjct: 513 SDGIEATFEAILHTYVRSLDWALRHRWWVLSTLPLSLVATAGIIVLMPKNIIPKQDVALI 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +   +  +         K   V                    +   +     T ++    
Sbjct: 573 VGYFRGDETGSFQKMDGKIRAVSAAMMADPDTESVAAFSGDTRVEGQAFAQMTDKHDRSD 632

Query: 658 GPKISRELIRKGIVGV 673
           GP      I K + G+
Sbjct: 633 GPDEMIARIHKRLEGL 648



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    T+ + +  TL    L G   +  ++ A+    G+ V+D +VV + +    + 
Sbjct: 357 RSTLIPAVTVPISLAGTLAAMYLLGFSLDTLSLMALTIATGFVVDDAIVVVENI---ARH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
               +  R        E     +  ++A     LP+ +  G+       FA+ +A  + +
Sbjct: 414 MEAGMDRRAASMLGAGEIAFTVLSITIALVAVFLPLLLMPGTPGKIFYEFAMTLAVTVGI 473

Query: 808 AASSSIFIAA 817
           +   SI +  
Sbjct: 474 SLFLSISLTP 483



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 83/218 (38%), Gaps = 6/218 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +      + +    + +       ++  +  +    ++Q          +  +   ++  
Sbjct: 867  DGFVSGAVSFNLAKNRSLDEAAAEIRATMVRLHVPESVQGGFTGEAAQFQTAMINELLVF 926

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I +   M + + I ++ +   L  ++TL       +    L G EF+L A+  V+ L+G 
Sbjct: 927  IAALATMYVTLGILYESYVHPLTILSTLPSAAVGAVLALWLTGQEFSLIAMIGVILLVGI 986

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
               + +++ D           ++S  + I ++  +     + T++AA    +P+ + GG 
Sbjct: 987  VKKNAILMVD--FALHAERDGAMSPEEAIREACAKRFRPILMTTLAAAFGAVPLILSGGY 1044

Query: 793  VI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             I       I +  G+ ++   +++    + L +   R
Sbjct: 1045 GIELRRPLGIAVVGGLAMSQLLTLYTTPVVYLLLERIR 1082


>gi|332993318|gb|AEF03373.1| AcrB/AcrD/AcrF family protein [Alteromonas sp. SN2]
          Length = 1124

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/605 (11%), Positives = 164/605 (27%), Gaps = 61/605 (10%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++      +       +P+                        
Sbjct: 9   KRPVAVSMFTFAVLLFGMVSLGRLSVNLLPDLSYPTLT--------------IRTDYTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K       + R  Q+ + ++F      +  + +V   L  
Sbjct: 55  APGEVEQLVSKPIEEAIGVVKGVRKVTSTSRAGQSDVVMAFRWGTDMDFASLEVREKLDV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQN-----NIDQVISHAIEQSMEIIRQRIDQIGI 176
           +  +L +D +K  L+        ++               +      +   +Q    +  
Sbjct: 115 L--QLPLDIEKPRLLRFNPSLDPVIKLGLTENVATGQLSTAQMKRLRLYGEQQVKRALES 172

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E          +  ++    D  +  QL     ++       N +  G           
Sbjct: 173 VEGVAAVRVGGGLENEVHILIDQRKASQLSIPITRIIDRIKAENVNAAGGRIEGDAQAFL 232

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  E+  EI  + +                         R         +      
Sbjct: 233 VRTLNQFENLTEIENLFIGRFE--------------------GRNIQLKDVATVESAYKD 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                        +     +   +     +      + +                     
Sbjct: 273 RSVVTRFNGSEGVEIAIYKEGDANAVDVAKQIASRLSEVENDIPSNYTLTQIYDQSVFIK 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +    K    +   L ++VL++ +      ++   SI ++VI T  L+     +L + S
Sbjct: 333 QAIDNVKSAAIMGGLLAMLVLYLFLKDFWTTVIISVSIPVSVIATFNLMYANDISLNMMS 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSV-----------------FCSLDMGFSRA 459
           + GI L +GL VD++I+V E I    ++ Q++                       G    
Sbjct: 393 LGGIALAVGLLVDNSIVVLENIDRHKKRRQAMLANNADGHISQSTPVLADDPAASGTKEV 452

Query: 460 YSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
              I  S +T +   V L F     G   +  A+T+  ++  S+  A++++ AM     +
Sbjct: 453 SGAIVASTLTTMAVFVPLIFVEGIAGQLFKDQALTVSFALAASLVVALTLIPAMARRKQK 512

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
            +       +  ++         I +     +   +  +F      L+      + I  K
Sbjct: 513 TQLAHEDTFSSPAKARPTSLLGKIGYAVKWPFATILRFVFVYLPAALITLVIGAWHILAK 572

Query: 577 GGIQL 581
           G   L
Sbjct: 573 GLSLL 577



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 5/199 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V L             + +V   + +     ++  T     +  ++  R     + 
Sbjct: 891  GQQRVALISANLAKGKLDEAVALVNMVLNDTQLPLSMDATVTGQSEDMQDSFRSLQFALA 950

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++   + + +  +F+     L  +  + L    ++    L     N+     ++ L G  
Sbjct: 951  LAIFMVYLVMASQFESLLHPLLILFAVPLAGAGSVYGLWLTNTPLNVVVFIGLIMLCGIV 1010

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            VN+ +V+ DR+    +L    +     I  +    L   V T++   + ++PMA +G   
Sbjct: 1011 VNNAIVLVDRIN---QLRANGMEKNAAIIDAGKTRLRPIVMTTLTTILGLMPMA-FGLGE 1066

Query: 794  IGSFAIPMAFGIVVAASSS 812
                  PMA  ++     S
Sbjct: 1067 GAEIRTPMAITVIFGLLFS 1085



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 27/266 (10%), Positives = 84/266 (31%), Gaps = 30/266 (11%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + L  V +   + +   +  +    E   +   +    ++V   + +     ++   +P
Sbjct: 257 NIQLKDVATVESAYKDRSVVTRFNGSEGVEIAIYKEGDANAVDVAKQIASRLSEVENDIP 316

Query: 648 LSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            +             ++ I       ++   +AML+       ++  +    ++ + +  
Sbjct: 317 SNYTLTQIYDQSVFIKQAIDNVKSAAIMGGLLAMLVLYLFLKDFWTTVIISVSIPVSVIA 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK--- 763
           T        I  N+ ++  +   +G  V++ +VV     +N+  +          +    
Sbjct: 377 TFNLMYANDISLNMMSLGGIALAVGLLVDNSIVVL----ENIDRHKKRRQAMLANNADGH 432

Query: 764 ---------------SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                             E  G  V +++      +P+       G +    A+ ++F +
Sbjct: 433 ISQSTPVLADDPAASGTKEVSGAIVASTLTTMAVFVPLIFVEGIAGQLFKDQALTVSFAL 492

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
                 S+ +A  ++  +   + K  
Sbjct: 493 AA----SLVVALTLIPAMARRKQKTQ 514


>gi|330446251|ref|ZP_08309903.1| heavy metal efflux pump, CzcA family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490442|dbj|GAA04400.1| heavy metal efflux pump, CzcA family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 1040

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/632 (11%), Positives = 166/632 (26%), Gaps = 40/632 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  LV++ ++   +G L ++ N    + +D  P       I                  
Sbjct: 11  NNRLLVLIATLFLTLGGLYSIKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDQTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  + K  L    T                     E           ++   E   +
Sbjct: 118 APKLPANAKPTLGPDATGVGWIYSYV-LQDKTGKHDLAELRSLQDWFLKYELQTVEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   E DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVEIDPAKLRAYDLTLQQVNMAIQNGNQETGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + +  +I                    + +     G              P         
Sbjct: 237 LTNIDDIK------------------SLPLKVTATGTPLLLGDVATINLGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+        L+         +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASAVIDKVKAKLETLQRSLPDGVEIVATYDRSTLIDQAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WQKLAEEFIVVAIVCALFLFHIRSSLVIAISLPIGILSAFIIMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   +    N++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENLHKHIERTPLTNENRWQVISKATEEVGTPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF-LI 534
                 G      A T   ++  +   AI++V  +M + +R + +             L 
Sbjct: 459 ALEGQEGKMFSPLAFTKTYAMAAAAGLAITLVPVLMGYFVRGRILPESKNPINKALIALY 518

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              + I     +        L +     +            +G +         + +   
Sbjct: 519 RPMLNISLRFPKTIIAIAIALMASSYYPITKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
           R  L+       +          + R +    
Sbjct: 579 RELLQQTNKLIKTVPEVATVWGKVGRAESATD 610



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 83/287 (28%), Gaps = 14/287 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQSYRDSVTKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        + ++                   +    L       + I
Sbjct: 816  WVFVDIDDRDLGSYVAEAQKTVAEQLKLPAGYSLAWSGQYEYMERAKARLSIVAP--LTI 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            S I +L+Y   R +    L  + TL L +   L         F++      + L G +V 
Sbjct: 874  SIIMLLLYFSFR-RVTEVLVIMATLPLAMVGGLWLMWYLNFNFSIAVGVGFIALAGVAVE 932

Query: 736  DKVVVYDRMRKNM--------KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              V++   + +          +   T+      I +   + +   + T +   I ++P+ 
Sbjct: 933  IGVIMLVYLNQAWSFKQQDCAEKTLTTDDLHAAIHEGAGQRVRPVMMTVLTVIIGLIPIM 992

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 G  V+   A PM  G+  A   ++ +   +     +   K +
Sbjct: 993  YGAGTGSEVMQRIAAPMIGGMASALILTLLVIPAVFKLWKNMAMKKS 1039



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/246 (13%), Positives = 75/246 (30%), Gaps = 10/246 (4%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
             +     +  N        +++       +   V   NL       IS  N +GE    
Sbjct: 228 EHMVRTTGYLTNIDDIKSLPLKVTATGTPLLLGDVATINLGPQMRRGISEFNGEGEAVGG 287

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V +     ++ A    ++   + +   +P             +  + +      +    I
Sbjct: 288 VIVMRFGENASAVIDKVKAKLETLQRSLPDGVEIVATYDRSTLIDQAVENLWQKLAEEFI 347

Query: 679 AMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            + I      F    +L    +L + I          GI  N+ ++  +   IG  V+  
Sbjct: 348 VVAIVCALFLFHIRSSLVIAISLPIGILSAFIIMHWQGINANIMSLGGIAIAIGAMVDGA 407

Query: 738 VVVYDRMRKNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +V+     +N+  +             +I K+  E      ++ +   +S +P+    G 
Sbjct: 408 IVMI----ENLHKHIERTPLTNENRWQVISKATEEVGTPLFFSLLIITLSFVPVFALEGQ 463

Query: 793 VIGSFA 798
               F+
Sbjct: 464 EGKMFS 469


>gi|167574741|ref|ZP_02367615.1| acriflavin resistance protein [Burkholderia oklahomensis C6786]
          Length = 1068

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/639 (10%), Positives = 161/639 (25%), Gaps = 51/639 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  MI       A P  L ++  D  PS                  ++   
Sbjct: 8   LKRPYTFIVMAIMILL-----ATPLALMRTPTDVLPSIDIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           + +      +      +        +                I +        +    + 
Sbjct: 50  NYNGLSAQEMTDRITSVHERTLTTTVGNIQHIESQTLPGIAIIKIFLQPGASTQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L+++ +   I ++    +   +     + +   +     Q+ 
Sbjct: 110 VSAAQAIVRQMPQGATPPLIISYSASSIPVIQLGLSSQSMSEQ--QLADVAMNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + D   L     T A +       N         +     
Sbjct: 168 TIPGAQVPYPYGGRTRVISVDLDTQALMAKGLTPADVVNAVNAQNLVLPTGTAKIGQTEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
             G     +   E+                      +     G    +     ++     
Sbjct: 228 RVGTNASPDTVAEL--------------------NRLPVQTTGGATLYLSDVAHVRDGFT 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    ++T   L   +                    
Sbjct: 268 PQTNVVRKDGERGVLVSVLKSGDASTLAVVDTLKALLPSIENTLPEDLKITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  LS LG T+ + 
Sbjct: 328 DAAIQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLLALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I         +  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTGLREAILEGAGEIAVPALVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM---KSIDINPLS 529
            +FF  G         A  +  ++L S   + ++V  + + +    +     +      S
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYVLSRTLVPTLAMLLFSKHRPDADAAASAAKPS 507

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           RF          F R R   + +  +  +              +       LG      V
Sbjct: 508 RFARFHHAFEHAFERLRAGYIVLLSVLLVRRRFYASLFVGFCVLSTGLVFALGRDFFPAV 567

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           D   +R ++ +     I       ++      +  P   
Sbjct: 568 DAGNIRLHMRAPTGYRIEETARLADQVEQTIREVVPAAE 606



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/379 (12%), Positives = 118/379 (31%), Gaps = 6/379 (1%)

Query: 447 SVFCSLDMGFSR-AYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
           S   ++     + A   +  S   + I  + L              + ++ L      I 
Sbjct: 111 SAAQAIVRQMPQGATPPLIISYSASSIPVIQLGLSSQSMSEQQLADVAMNFLRPQLITIP 170

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
             +    +  R + +             +     +  + A+   +         +   + 
Sbjct: 171 GAQVPYPYGGRTRVISVDLDTQALMAKGLTPADVVNAVNAQNLVLPTGTAKIGQTEYRVG 230

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
           T+     +     + +       + LS V    +         +        +  L+   
Sbjct: 231 TNASPDTVAELNRLPVQTTGGATLYLSDVAHVRDGFTPQTNVVRKDGERGVLVSVLKSGD 290

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYI 684
             ++A    L+ +   I   +P                  I+  I   +I + +  ++ +
Sbjct: 291 ASTLAVVDTLKALLPSIENTLPEDLKITPLFDQSVFVDAAIQGVIHEALIAAVLTAMMIL 350

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   L    ++ L I  +L   +  G   N+  +  +   +G  V+D  V  + +
Sbjct: 351 LFLGNWRSTLIIAISIPLSIFTSLLALSALGETINIMTLGGLALAVGILVDDATVTIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFG 804
            +++ L       R+ I +   E    ++ +++   I  +PM    G     F +P+A  
Sbjct: 411 ERHLHL---GTGLREAILEGAGEIAVPALVSTLCICIVFVPMFFLTGVARYLF-VPLAEA 466

Query: 805 IVVAASSSIFIAAPILLFI 823
           +V A  +S  ++  ++  +
Sbjct: 467 VVFAMLASYVLSRTLVPTL 485



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 61/162 (37%), Gaps = 7/162 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  ++ +   +        + G   ++ A+   +  +G
Sbjct: 893  VAMAIVLVYLLIVVNFQSWLDPLIIVSAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 952

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
             +  + ++V    R   +             ++    +   + T++A  I ++PMA+   
Sbjct: 953  VATANSILVVAFAR---QRLEAGAPPLTAALEAGATRIRPVLMTALAMIIGMIPMALGLG 1009

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G          +  G++ A  S++     +   ++   AK+
Sbjct: 1010 VGAEQNAPLGRAVIGGLLFATVSTLLFVPLVFAGVHQRLAKH 1051


>gi|298483177|ref|ZP_07001357.1| heavy metal efflux pump, CzcA family [Bacteroides sp. D22]
 gi|298270694|gb|EFI12275.1| heavy metal efflux pump, CzcA family [Bacteroides sp. D22]
          Length = 1035

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 88/613 (14%), Positives = 184/613 (30%), Gaps = 46/613 (7%)

Query: 5   PWLVI-LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE- 62
            W+++ L+ M+C  G    +     Q  ++ +P                 S +V +V   
Sbjct: 13  RWVMLCLFVMMCIFGYYSWM-----QLSIEAYPDIADVT-----------SQVVTQVPGL 56

Query: 63  -DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   + +  +   + L    +         + IT+ F D         +V   L  
Sbjct: 57  AAEEVEQQITIPLERAINGLPGMHVMRSRSTFGLSMITIVFKDGTEDYWSRQRVQERLNE 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L       L   T+           +    +    E    +I   I +I       
Sbjct: 117 V--ELPYGAVPGLDPLTSPVGEVYRYIIESDQHSLRELTELQNWVI---IPRIKEVSGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  I  Q   E DP +L Q   + +++       N +  G +     L        
Sbjct: 172 DVTNFGGITTQFQVEIDPYKLEQYHLSLSQVIEAIENNNANVGGSILNRGDLGYVVRGIG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+E+  ++  I ++  +           +     E      +     +  + L  ++   
Sbjct: 232 LIENLEDLGHIVVSTTSGVPVFLNDISSLKYGNLERKGILGYADRIRDYSESLEGIVLLL 291

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P               N T+     +   L                      + + 
Sbjct: 292 KHENPSKVLDGIHAAVDELNNATLPEGVRIHTFL--------------DRTSLVNTTLNT 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV+IVL + +   +  L+   +I +++++   L+ L      L S+  I 
Sbjct: 338 VSHTLLMGMALVVIVLILFLGNWRGALLVSITIPVSLLIAFILMHLTDIPANLLSLGAID 397

Query: 422 LGIGLAVDSNILVNERI---REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            GI   VD  I++ E I   RE++        S+          I  S I  + A + LF
Sbjct: 398 FGII--VDGAIVMLETILKKREDHPGQYIEEESIAQCAKEVGRPIVFSTIVVITAYLPLF 455

Query: 479 FF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            F           A TM  +++ ++  A+ ++  +   I R  +    +           
Sbjct: 456 AFERVERKLFTPMAFTMSYALIGALLVALLLIPGLAYAIYRKPRKIYKNKWLEKLKEKYT 515

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             I I   +     +   ++     +              +G I L V     + +   +
Sbjct: 516 AMIEILVEKPLKAILFSCLILMASIVLSGVVGKDFLPELDEGSIWLQVNLPPGISVEKSK 575

Query: 596 SNLESLQIGDISF 608
              ++L+   + +
Sbjct: 576 EMSDTLRARTMKY 588



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/225 (13%), Positives = 81/225 (36%), Gaps = 9/225 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E N                  L+  ++ I + V   + + T   G     +      + V
Sbjct: 806  EMNRRHLTVKLNLRGRDLVSFLKEAQEVINQKVQYDSSKYTVKWGGAFENQNRAYTRLSV 865

Query: 674  IISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
            ++    M ++I +   +  F    +   I+ +    G  AL   G+  N+++    + + 
Sbjct: 866  VLPLTLMCMFILLYATFGKFRQAGLVLSIVPLALFGGMLALNMRGMTLNVSSAVGFIAMF 925

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G S+ + +++  ++     L    +  R  + +   +     + TS+   + + P ++  
Sbjct: 926  GLSIQNGIIMISQIN---SLRKGGMELRKSVIEGARQRFRPILMTSVTTVLGLFPASLAT 982

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G  V    A  + +G++ ++  S+F+       I +      +
Sbjct: 983  GIGSDVQRPLATVIVYGLMFSSLISLFVLPVFYYLIENNVLNKKK 1027



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 64/163 (39%), Gaps = 5/163 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++  A+ +++ I     W  AL    T+ + +        L  I  NL ++ A+    G 
Sbjct: 343 LMGMALVVIVLILFLGNWRGALLVSITIPVSLLIAFILMHLTDIPANLLSLGAI--DFGI 400

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+  +V+ + + K  + +       + I +   E     V++++    + LP+  +   
Sbjct: 401 IVDGAIVMLETILKKREDHPGQYIEEESIAQCAKEVGRPIVFSTIVVITAYLPLFAFERV 460

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               F   A  M++ ++ A   ++ +   +   IY    K  +
Sbjct: 461 ERKLFTPMAFTMSYALIGALLVALLLIPGLAYAIYRKPRKIYK 503


>gi|255019575|ref|ZP_05291662.1| acriflavin resistance protein [Acidithiobacillus caldus ATCC 51756]
 gi|254970983|gb|EET28458.1| acriflavin resistance protein [Acidithiobacillus caldus ATCC 51756]
          Length = 1038

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/565 (11%), Positives = 144/565 (25%), Gaps = 45/565 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + L  ++   GL       L    +  +P                         
Sbjct: 9   RRPILAISLALVLFFFGL-----RSLGLMPITEYPPTKSSMVT---------VTTHYFGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               VN F+    ++                   + ITL             +V   +  
Sbjct: 55  TPKTVNAFITAPLEKAVGQAPGINYMTAVSEDGVSIITLYMRMGVNPNAALSQVQSKVNT 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST- 180
           V ++L     + ++         ++L          +  + +  + R     I       
Sbjct: 115 VLNQLPKGVMQPIVEEMPGSGAYLMLLSFQGKG--YNQQQITDYLTRVVQPAIEGVPGIG 172

Query: 181 -----IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                    G +     +    +P  +     T A++       +           +   
Sbjct: 173 LTSILPPGTGPNGNTYAMRVWLNPHAMSVYGVTPAEIDSALQKNDFVAAVGRLRGHYTAV 232

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           S      +                     T K    +                 +     
Sbjct: 233 SLSASTAL--------------------HTPKAFGQLVVATRDGVPIHLDQVAQVSLGAQ 272

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                 ++                +          + A L+          V        
Sbjct: 273 TYDSSVLVDGKPAVNIGIQQAPGSNALQVAAGVKTVLAQLQTTMPAGMHEQVIYNGAQFI 332

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S        A+    V++V+++ +   +  +V   ++ + ++  L LL  +G T+ L 
Sbjct: 333 QSSIHEVLTDIALALLAVVLVIYLFMGTWRALIVPAVALPVAMVGALTLLHAMGFTINLL 392

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++  +VL IGL VD  I+V E +        +   +         S I     T +    
Sbjct: 393 TLLAMVLAIGLVVDDAIIVVENVHRHMEHGATPLHAALASAKELASPILVMATTLMAVFA 452

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F G   G     FA+T+  ++ +SM  A+++   +   +++      I +     F 
Sbjct: 453 PMAFIGGLVGHLFSEFALTIVATVALSMIVALTLAPMLSSRVLKPGHEGRIAVAVEHAFN 512

Query: 533 LIPDCIAIQFMRARFWGVGISILFS 557
            +         R       + +L  
Sbjct: 513 RLKGVYGRSLSRVLTVWPAVIVLAV 537



 Score = 65.9 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 88/253 (34%), Gaps = 7/253 (2%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           +     G + +      P+ L  V       Q  D S          +   Q    +++ 
Sbjct: 241 HTPKAFGQLVVATRDGVPIHLDQVAQVSLGAQTYDSSVLVDGKPAVNIGIQQAPGSNALQ 300

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK- 689
               ++ V  ++   +P    +     G +  +  I + +  + ++ +A+++ I++    
Sbjct: 301 VAAGVKTVLAQLQTTMPAGMHEQVIYNGAQFIQSSIHEVLTDIALALLAVVLVIYLFMGT 360

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   +     L + +   L      G   NL  + A++  IG  V+D ++V + +    +
Sbjct: 361 WRALIVPAVALPVAMVGALTLLHAMGFTINLLTLLAMVLAIGLVVDDAIIVVENVH---R 417

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                 +       S  E     +  +        PMA  GG V      FA+ +   + 
Sbjct: 418 HMEHGATPLHAALASAKELASPILVMATTLMAVFAPMAFIGGLVGHLFSEFALTIVATVA 477

Query: 807 VAASSSIFIAAPI 819
           ++   ++ +A  +
Sbjct: 478 LSMIVALTLAPML 490



 Score = 45.1 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 19/135 (14%), Positives = 47/135 (34%), Gaps = 11/135 (8%)

Query: 698  TTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              L   +    LG  ++     N+ +   ++ LIG      +++      +       + 
Sbjct: 893  VALFGALLPIALGVSSI-----NIYSEVGMVMLIGLIAKQGILIVQ--FASTIQQEKGLD 945

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-GGSVIGSFAIPMAF--GIVVAASSSI 813
             R  +  + +  L   + T  A     +P+    GG+    F+I +    G+   +  S+
Sbjct: 946  KRSAVIDAASLRLRPILMTVSAMIAGAIPLLFATGGNADARFSIGLVIVSGLGFGSLVSL 1005

Query: 814  FIAAPILLFIYDWRA 828
            ++     ++    R 
Sbjct: 1006 YVIPAFYVWFGKQRR 1020


>gi|237739705|ref|ZP_04570186.1| acriflavin resistance protein B [Fusobacterium sp. 2_1_31]
 gi|229423313|gb|EEO38360.1| acriflavin resistance protein B [Fusobacterium sp. 2_1_31]
          Length = 1020

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/618 (11%), Positives = 171/618 (27%), Gaps = 44/618 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++      IGLL            +  P+                        
Sbjct: 9   RRPVATTMVMLSFIFIGLLAMF-----SMKKELIPNINIPVVT---------ISTTWSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +     +  S ++             + + ++F      +    ++   +  
Sbjct: 55  VSEDVEAQVTKKIKDSLSNVEAIDKIQTVSAYSSSTVVVNFEYGVDTDEKVTQIQREVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    L+        ++      I          +  I  Q   ++       
Sbjct: 115 ITNNLPSDANTPLVRKVEAGSGNMTAV---IAFNADSKTALTTFIKEQLKPRLESLPGIG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         QL  + D  +L     +  ++         +                   
Sbjct: 172 QVDIFGNPDKQLQIQVDSDKLASYNLSPMELYNIVRTSVATYPIGKLS------------ 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G          D        +I     G          ++        +  
Sbjct: 220 --------TGNKDMIIRFMGDLDYIDQYKNILISSNG-NTLRLKDVADVVLTTEDATNIG 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +    +          A  +   +R          +E  +      S S 
Sbjct: 271 YLNGKESVVVLLQKSSDGDTITLNNAAFKVIEEMRPYMPAGTEYSIEMDSSENINNSISN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      L  I+LF+ +   +  ++   ++ + ++ T A LS+ G TL L S+ G+ 
Sbjct: 331 VSSSAVQGLVLATIILFVFLKSFRTTILISLALPVAIVFTFAFLSMRGTTLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSV-FCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +G+G+  D++++V + I     +  S    + + G      ++  S +T ++  + + F 
Sbjct: 391 IGVGMLTDNSVVVVDNIYRHITELNSPVREAAENGTEEVTFSVIASALTTIVVFLPVLFV 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R  +  +  S L ++  AI+++  +    +  K MKS D     +       
Sbjct: 451 PGLAREFFRDMSYAIIFSNLAAIIVAITLIPMLASRFLNRKSMKSEDGKLFKKVKAFYLK 510

Query: 538 IAIQFMRARFWGVGISILFSICSI--CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           +    +  +   V I +     SI                +G   L     +  DL+   
Sbjct: 511 VINSAVSHKGLTVLIMVGLFFFSILVGPKLLKFEFMPKQDQGKYSLTAELQKGTDLAKAE 570

Query: 596 SNLESLQIGDISFQNFDG 613
              + L+    +  + + 
Sbjct: 571 RIAKELEEIVKNDPHTES 588



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 85/244 (34%), Gaps = 7/244 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D   V+ +  +             +              V   ++   + ++   + P S
Sbjct: 762  DNKFVKLSDVATLQYAEGTSEIRKKNGIYTVTISGNDGGVGLGKIQSKIIEEFNNLEPPS 821

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
            TI  +     +  ++ + +    + IS   +   +  +F+ +      I ++ L +   +
Sbjct: 822  TISYSWGGQSEKMQKTMSQLSFALSISIFLIYALLASQFESFILPFIIIGSIPLALIGVI 881

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                +     ++  +  V+ L G  VN+ +V+ D ++    + T        I  S    
Sbjct: 882  WGLVVLRQPIDIMVMIGVILLAGVVVNNAIVLIDFIK---TMRTRGYDKEYAIIYSCETR 938

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + T+M     ++PMA+    G       AI + FG+  +   ++ +   +   +  
Sbjct: 939  LRPILMTTMTTVFGMIPMALGLGEGSEFYRGMAITVIFGLSFSTILTLVLIPILYSVVDS 998

Query: 826  WRAK 829
            +  K
Sbjct: 999  FTVK 1002



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 77/205 (37%), Gaps = 8/205 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WI 686
           + A  +V+E ++  +      S   ++          +    + G++++ I + +++   
Sbjct: 294 NNAAFKVIEEMRPYMPAGTEYSIEMDSSENINNSISNVSSSAVQGLVLATIILFVFLKSF 353

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           R     +L         I  T  F ++ G   NL ++  +   +G   ++ VVV D +  
Sbjct: 354 RTTILISLALPVA----IVFTFAFLSMRGTTLNLISLMGLSIGVGMLTDNSVVVVDNI-- 407

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
              +   +   R+  +    E     + +++   +  LP+    G     F   M++ I+
Sbjct: 408 YRHITELNSPVREAAENGTEEVTFSVIASALTTIVVFLPVLFVPGLA-REFFRDMSYAII 466

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
            +  ++I +A  ++  +        
Sbjct: 467 FSNLAAIIVAITLIPMLASRFLNRK 491


>gi|218703907|ref|YP_002411426.1| copper/silver efflux system, membrane component [Escherichia coli
           UMN026]
 gi|293403837|ref|ZP_06647831.1| heavy metal efflux pump [Escherichia coli FVEC1412]
 gi|298379614|ref|ZP_06989219.1| cation efflux system protein cusA [Escherichia coli FVEC1302]
 gi|300901069|ref|ZP_07119182.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 198-1]
 gi|218431004|emb|CAR11880.1| copper/silver efflux system, membrane component [Escherichia coli
           UMN026]
 gi|291428423|gb|EFF01448.1| heavy metal efflux pump [Escherichia coli FVEC1412]
 gi|298279312|gb|EFI20820.1| cation efflux system protein cusA [Escherichia coli FVEC1302]
 gi|300355482|gb|EFJ71352.1| heavy metal efflux pump, CzcA family [Escherichia coli MS 198-1]
          Length = 1047

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/684 (10%), Positives = 172/684 (25%), Gaps = 47/684 (6%)

Query: 2   RNNPWLVILYSMICC-IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           R +     L  M    + +          + +D  P       I                
Sbjct: 7   RRSVANRFLVLMGALCLSIWGTWTII--NTPVDALPDLSDVQVI---------IKTSYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          +          +   + + + F D         +V  +L 
Sbjct: 56  QAPQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLN 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  KL       L    T                     +           ++      
Sbjct: 116 QVQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ +     DP RL Q   + A++       N    G    +          
Sbjct: 175 AEVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRAS 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   + +                   + +   E G   +          P       
Sbjct: 235 GYLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIA 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   +   ++  +    I         L++        +           +  
Sbjct: 277 ELSGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAID 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
              G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI
Sbjct: 337 NLSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNIT 469
            + +G  VD+ I++ E   +               N++ +  +          +F S + 
Sbjct: 397 AIAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLI 456

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             ++ + +F      G      A T   ++  +   AI ++  +M + IR K        
Sbjct: 457 ITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIIVIPILMGYWIRGKIPPESSNP 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 517 LNRFLIRAYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            P   +        LQ  D    +         +       + +    +     ++    
Sbjct: 577 LPGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQD 634

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
                   + +  ++   +   G+
Sbjct: 635 QWRPGMTMDKIIEELDNTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|209543988|ref|YP_002276217.1| acriflavin resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209531665|gb|ACI51602.1| acriflavin resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 1107

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/676 (10%), Positives = 163/676 (24%), Gaps = 42/676 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE--V 60
                 ++   +   GL            +   P+                 ++V     
Sbjct: 10  RPVATTLISLALVIAGLFA-----YRALPVGDLPNISVPI-----------IYVVATQPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +    +     +                I L+F DSR  +  A+ V   L+
Sbjct: 54  SSPQQMATSVTTPLERRLGQISGISAIESDSTDSTAFILLTFDDSRNIDGAANDVQAALR 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                +    +            + ++    +        +    +       +   +  
Sbjct: 114 AATQDMPATLQMVPQYWKANPADNPIMI-MALTSDTRPMADLYDVMKTHLQPMLSQIKGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +      +  E +P  L +       +       N +       V   R S    
Sbjct: 173 GWIEITGSSAPAVRVEMNPYPLFKYGIGFEDIRSALASANANTPKGFVDVGPQRYSISTN 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                                  +      D+     G+R        ++   +      
Sbjct: 233 --------------------DQARHAADYRDLVVGYRGSRPVRLTDVASVVDGVEDERQT 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                     AI   +   +    ++        +                      S +
Sbjct: 273 GYFNGHRAVMAIVRPQPGANVIRVMDEIKARTPAIIGALPRGMTLTPAMDRSITIRASLA 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T  I   LV+ V+ + +   +  L+   ++ +++  TLA + LLG +L   S+  +
Sbjct: 333 DTQLTLLISVLLVVGVVLVFLRAPRSTLIPAVTVPISLAGTLAAMYLLGFSLDTLSLMAL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            +  G  VD  I+V E I            +  +G      T+    I  +   + L   
Sbjct: 393 TIATGFVVDDAIVVVENIARHMEAGMDRRAASMLGAGEIAFTVLSITIALVAVFLPLLLM 452

Query: 481 GGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G   +    FA+T+ +++ IS+F +IS+   M   ++       +          +   
Sbjct: 453 PGTPGKIFYEFAMTLAVTVGISLFLSISLTPMMCSLLLDVAHGAPLPAGASRTRRALRRL 512

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
                                      +               + ++    +    V   
Sbjct: 513 SDGIEATFEAILHTYVRSLDWALRHRWWVLSTLPLSLVATAGIIVLMPKNIIPKQDVALI 572

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +   +  +         K   V                    +   +     T ++    
Sbjct: 573 VGYFRGDETGSFQKMDGKIRAVSAAMMADPDTESVAAFSGDTRVEGQAFAQMTDKHDRSD 632

Query: 658 GPKISRELIRKGIVGV 673
           GP      I K + G+
Sbjct: 633 GPDEMIARIHKRLEGL 648



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/130 (17%), Positives = 49/130 (37%), Gaps = 6/130 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L    T+ + +  TL    L G   +  ++ A+    G+ V+D +VV + +    + 
Sbjct: 357 RSTLIPAVTVPISLAGTLAAMYLLGFSLDTLSLMALTIATGFVVDDAIVVVENI---ARH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVV 807
               +  R        E     +  ++A     LP+ +  G+       FA+ +A  + +
Sbjct: 414 MEAGMDRRAASMLGAGEIAFTVLSITIALVAVFLPLLLMPGTPGKIFYEFAMTLAVTVGI 473

Query: 808 AASSSIFIAA 817
           +   SI +  
Sbjct: 474 SLFLSISLTP 483



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 83/218 (38%), Gaps = 6/218 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +      + +    + +       ++  +  +    ++Q          +  +   ++  
Sbjct: 866  DGFVSGAVSFNLAKNRSLDEAAAEIRATMVRLHVPESVQGGFTGEAAQFQTAMINELLVF 925

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I +   M + + I ++ +   L  ++TL       +    L G EF+L A+  V+ L+G 
Sbjct: 926  IAALATMYVTLGILYESYVHPLTILSTLPSAAVGAVLALWLTGQEFSLIAMIGVILLVGI 985

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
               + +++ D           ++S  + I ++  +     + T++AA    +P+ + GG 
Sbjct: 986  VKKNAILMVD--FALHAERDGAMSPEEAIREACAKRFRPILMTTLAAAFGAVPLILSGGY 1043

Query: 793  VI---GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             I       I +  G+ ++   +++    + L +   R
Sbjct: 1044 GIELRRPLGIAVVGGLAMSQLLTLYTTPVVYLLLERIR 1081


>gi|170735474|ref|YP_001774588.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3]
 gi|169821512|gb|ACA96093.1| acriflavin resistance protein [Burkholderia cenocepacia MC0-3]
          Length = 1082

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 70/551 (12%), Positives = 152/551 (27%), Gaps = 44/551 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G     P  L ++  D FPS                  +V   
Sbjct: 8   LRRPYTFVVLALLIFIAG-----PLALLRTPTDIFPSIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMAKRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + D +     +           Q+   
Sbjct: 112 NAASILRILPPGTLPPNIITYNASTVPILQLGLSSDTLAEQ--QLYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + D   L+        +       N    G    +     + 
Sbjct: 170 QGAAVPLPFGGKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGTAKIGTHEYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    ++                    D+    +G    +     ++    A  
Sbjct: 230 QMNGSTQTVAALT--------------------DLPVKTIGGNVVYVRDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S    I+    +   + AG          +        
Sbjct: 270 TNIVRVDGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGLPKALHIAPLDDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   +I L V+ +L  LS+LG T+ + ++
Sbjct: 330 AVQGVVREALIAACLTALMILLFLGSWRATLIIAITIPLAVLTSLLALSVLGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I         +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLELGAPLEEAILTGAGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G         A  +  +++ S F + ++V  + + ++R K          +    +
Sbjct: 450 FLLTGVARYLFVPLAEAVIFAMIASYFFSRTLVPTLAMALMRAKGSGRPPRGVFAPLVHV 509

Query: 535 PDCIAIQFMRA 545
               A    R 
Sbjct: 510 ARFQAAFEHRF 520



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 82/238 (34%), Gaps = 8/238 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++  VR                  +      L  +   S +   +++ VK  + +I    
Sbjct: 252 NVVYVRDVAHVRDGYAPQTNIVRVDGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGL 311

Query: 650 TIQNTEIVGPKISRELI--RKGIV--GVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                       S  +    +G+V   +I + +  L+ +     W   L    T+ L + 
Sbjct: 312 PKALHIAPLDDQSVFVKAAVQGVVREALIAACLTALMILLFLGSWRATLIIAITIPLAVL 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            +L   ++ G   N+  +  +   +G  V+D  V  + +              + I    
Sbjct: 372 TSLLALSVLGQTINIMTLGGLALAVGILVDDATVAIENI---THHLELGAPLEEAILTGA 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            E    +  ++++  I  +PM +  G     F +P+A  ++ A  +S F +  ++  +
Sbjct: 429 GEIAVPTFVSTLSICIVFVPMFLLTGVARYLF-VPLAEAVIFAMIASYFFSRTLVPTL 485



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 7/158 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + ++   + + + + F  W   L  +  L   +        +     ++ A+   +  IG
Sbjct: 905  LALAISLVYLLMVVNFQSWLDPLVIVGGLPASLAGIAWMLFVTRTTLSVPALTGTILCIG 964

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+ +               +        V T++A  I +LPMA+   
Sbjct: 965  IATANSILVVNAARELLAG---GEPPWQAALDAGFARFRPVVMTALAMLIGMLPMALGLG 1021

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             GG         +  G+     S++     +  F++ W
Sbjct: 1022 DGGEQNAPLGRAVIGGLAFGTVSTLLFVPVLFGFVHAW 1059


>gi|149200242|ref|ZP_01877264.1| Cation efflux system protein, AcrB/AcrD/AcrF family protein
           [Lentisphaera araneosa HTCC2155]
 gi|149136684|gb|EDM25115.1| Cation efflux system protein, AcrB/AcrD/AcrF family protein
           [Lentisphaera araneosa HTCC2155]
          Length = 1049

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/679 (11%), Positives = 200/679 (29%), Gaps = 51/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           ++N  +++    ++      IA         +D  P                   +++  
Sbjct: 10  LKNRLFVIGSALLMTVAAYFIA-----DDMPIDVLPDLNRPTV------------VIMTE 52

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                 + V   + +  +++ +        + S     + I + FA           V  
Sbjct: 53  AHAMVPEDVEQLVTLPLEQILNGATGVENVMSSSGLGLSVIKVQFAWGTDIYRNRQIVME 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L    S+L     + ++   +     I +   N         +       Q   ++   
Sbjct: 113 KLPLAKSRLPEGI-EPVMAPISSIMGQIQIIGINSKTGKHSPSDIRALAEYQIKYELLSI 171

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               + +       QL    D  +LR       ++       N +  G    +     + 
Sbjct: 172 PGVSKVIIGGGSAKQLQAIIDAEKLRSFGVGIQEIEEAINKNNANSSGAFINLGTKAPAI 231

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +  +++K ++                    V +  D++      +V     G     +
Sbjct: 232 TVRGFIKNKQDLEN------------------VVVKADDLRPILLKDVASIQFGPSPIKI 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +  +  +P I   I       +   T E    L ++  +    +++N    +       
Sbjct: 274 GEAGINGSPGILMVIMKQPGYDTVQLTEEVEKRLESLSASLDSDLEINSDLFKQSIFIER 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +             +V+I+LF+ ++  +   +   +I L++ LT+ + SL   ++   ++
Sbjct: 334 AIDNVMEAVRDGGIMVIIILFIFLMNWRITFITLTAIPLSMALTILVFSLFDVSINTMTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFC--------SLDMGFSRAYSTIFDSNIT 469
            GI + IG  VD  I+  E +    ++N              +    S     I    + 
Sbjct: 394 GGIAVAIGALVDDAIVDVENVFRRLKENFLKKEEDRLNSLVVIFNASSEVRKPIVIGTLL 453

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++    LFF     G        +  +S+L S+  ++++   +  F++     K    +
Sbjct: 454 VMVVYFPLFFLTGMEGKLFTPIGASYIISVLASLLVSLTVTPVLCYFMLPKSLSKGDKKD 513

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL-GVLA 585
                 L      +  +  +     + +L     I + F               +  +  
Sbjct: 514 TYVVRTLKTFVAKVIAISIKHAKAVLILLVIALGISISFLLTRGMQFLPPFNEGVAQINL 573

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             P D  +  SN   L++ ++  +    +       + +  +        E++     EI
Sbjct: 574 VLPPDTGLETSNAYGLRLENLLTKVDGIKNVTRRTGRSEGDEHAEGVNTSEVIISFDPEI 633

Query: 646 VPLSTIQNTEIVGPKISRE 664
                    EI     +  
Sbjct: 634 DRSPEEVIAEIRQEVDAEF 652



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 9/216 (4%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-I 675
            ++  Q           V + ++     +     I +            I   +  V   
Sbjct: 286 MVIMKQPGYDTVQLTEEVEKRLESLSASLDSDLEINSDLFKQSIFIERAIDNVMEAVRDG 345

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + ++I       W      +T + L +  T+  F+LF +  N   +  +   IG  V+
Sbjct: 346 GIMVIIILFIFLMNWRITFITLTAIPLSMALTILVFSLFDVSINTMTLGGIAVAIGALVD 405

Query: 736 DKVV----VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           D +V    V+ R+++N +K     ++   +I  + +E     V  ++   +   P+    
Sbjct: 406 DAIVDVENVFRRLKENFLKKEEDRLNSLVVIFNASSEVRKPIVIGTLLVMVVYFPLFFLT 465

Query: 791 GSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFI 823
           G     F          ++ +   S+ +   +  F+
Sbjct: 466 GMEGKLFTPIGASYIISVLASLLVSLTVTPVLCYFM 501



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 93/253 (36%), Gaps = 10/253 (3%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             +  ++R +  +     +S+ N   E      +        +   V+  V   +  +   
Sbjct: 788  ANGELIRLSDVAEVSQTMSYNNIKHENVGRRIIVQHNVAGRSLGEVVAEVDSALDSVRAR 847

Query: 649  STIQNTEIVGPKISRELIRKG----IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILD 703
                    +      E  RK     +   I+S + M++ +++ F     +L  + ++ + 
Sbjct: 848  MENLKGYSLKISGQFEAQRKATQRILWLSIVSILCMILILYMHFKSINLSLQVMISIPMA 907

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
                + + A+     ++  +  +++L G +  + +++ D      +      +  +LI K
Sbjct: 908  FIGAVSYLAISQQTLSVATLVGLISLGGIAARNAILLLDHYIHLHRDEGVKFTP-ELIIK 966

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVVAASSSIFIAAPI 819
            +  E +   + T++ + I+++P+A+  G          A  +  G++ +      ++   
Sbjct: 967  AGQERMVPVIMTALTSGIALIPLALAPGQPGKEILYPVATVIIGGLISSTLLEFIVSPAA 1026

Query: 820  LLFIYDWRAKNAR 832
                    A+ ++
Sbjct: 1027 FWLFGKKAAEKSK 1039


>gi|85711113|ref|ZP_01042173.1| Metal efflux system membrane component (silver efflux pump related)
           [Idiomarina baltica OS145]
 gi|85695026|gb|EAQ32964.1| Metal efflux system membrane component (silver efflux pump related)
           [Idiomarina baltica OS145]
          Length = 1066

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 87/690 (12%), Positives = 199/690 (28%), Gaps = 57/690 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF---- 65
           L  ++   G+ IA    +P+  LD FP                   + +  +        
Sbjct: 14  LLLVLALFGISIASFFVIPKLNLDAFPDVTN-------------VQVTVNTEAPGLAATE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +    + +   L          +   + IT+ F +S         V   LQ     
Sbjct: 61  VEQLITYPIESVMYALPDVEEVRSISKTGLSGITVVFDESVDIYFARQLVFERLQAAKEL 120

Query: 126 LNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +        +   ++                   ++E            +   E   + L
Sbjct: 121 IPEGVGTPEMGPNSSGLGQVYQYLLVADPDSGVTSMELRSLNDYVVKLLLMPVEGITEVL 180

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                + Q     +P++L     T   +       N +  G+             Q ++ 
Sbjct: 181 SFGGEVKQYQVNLNPAKLLSYELTQQDVMDAVNKNNGNVGGWYM------PRGQEQLVIR 234

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
               ++            P      V ++  ++         R      ++  +DG+V  
Sbjct: 235 GTGWLANGDKGLQQLRQIPLKTVDGVSVTLGQVATVEVGSEIRQ-GAVSMSRKVDGQVNQ 293

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
              +   I   +   +   TI+       +++                     + S    
Sbjct: 294 LGEVVSGIVLKRMGSNTKATIDGIKKRIPLIQQALPEGVTFEPYYDQADLIQKAVSTVAY 353

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           +  I    ++ VL + +L  +   +   SI +++ + L ++S +G +  L S+ GI + I
Sbjct: 354 SLLIAFVFIIAVLALFLLNLRATFLVLLSIPVSIAIALMVMSAVGMSANLMSLGGIAVAI 413

Query: 425 GLAVDSNILVNERIREE----------------NRKNQSVFCS----------LDMGFSR 458
           G+ VD ++++ E I +                    +     +          +    + 
Sbjct: 414 GMLVDGSVVMVENIFKHLSRPDIEHHEQAAKRTEYHDPDPQAAQLDNHGIKLRVKEAANE 473

Query: 459 AYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
               +F + +  L+  + LF F G         AI++ L+I+ ++F AI +V A+  +  
Sbjct: 474 VARPVFFAAMIILVVFMPLFSFQGVEAKLFEPMAISIILAIISAVFVAIMVVPALASYFF 533

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
                   +             ++I     +        LF    + +            
Sbjct: 534 SRGIKPRENKLLKPLDRGYKRLLSITLKSKKVVVAIAGALFVAALLLVPQLGTEFAPELE 593

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           +G I + V        S + + LE     +    +F      L R+         +    
Sbjct: 594 EGTINIRVTL---APSSNLETALEVAPKLEKILMSFPETTYALSRIGRAEVGGDPEPISN 650

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISREL 665
             +   +      +T  +   +  K+  +L
Sbjct: 651 IEIYVGVKPQSEWTTASDRYALQEKMEAKL 680



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 88/267 (32%), Gaps = 27/267 (10%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
           S +R    S+        N  GE    + L+    ++ A    ++     I + +P    
Sbjct: 274 SEIRQGAVSMSRKVDGQVNQLGEVVSGIVLKRMGSNTKATIDGIKKRIPLIQQALPEGVT 333

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGF 710
                    + ++ +      ++I+ + ++  +             + ++ + I   L  
Sbjct: 334 FEPYYDQADLIQKAVSTVAYSLLIAFVFIIAVLALFLLNLRATFLVLLSIPVSIAIALMV 393

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR--------KNMKLYTTSISFRD--- 759
            +  G+  NL ++  +   IG  V+  VV+ + +         ++ +       + D   
Sbjct: 394 MSAVGMSANLMSLGGIAVAIGMLVDGSVVMVENIFKHLSRPDIEHHEQAAKRTEYHDPDP 453

Query: 760 ------------LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFG 804
                        + ++ NE      + +M   +  +P+  + G     F   AI +   
Sbjct: 454 QAAQLDNHGIKLRVKEAANEVARPVFFAAMIILVVFMPLFSFQGVEAKLFEPMAISIILA 513

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNA 831
           I+ A   +I +   +  + +    K  
Sbjct: 514 IISAVFVAIMVVPALASYFFSRGIKPR 540



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 75/217 (34%), Gaps = 9/217 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +  + I     Q    +    V +Q         + V ++ +     +   S       
Sbjct: 828  EVAHVAIESGPPQIRRDDVQRRVVIQSNVQGRDMGSVVTDIRQTIDNTVDLPSGYSVDIG 887

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-- 714
               +  +   ++  + V IS + + + ++  F        +  + + +    G  ALF  
Sbjct: 888  GQFESQQRAQKRLSIVVPISLVLIALLLYFAFG-TLGQAMLILVNVPLAVIGGIVALFIS 946

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ +    +TL G +V + VV+ + +    +         + +       L   + 
Sbjct: 947  GQYLSVPSAVGFITLFGVAVLNGVVLVESIN---QRIADGHQVTEAVFDGAWSRLRPVLM 1003

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
            T++ + + ++PM      G  +    A  +  G+V A
Sbjct: 1004 TAITSALGLIPMLFATGAGAEIQRPLATVIVGGLVSA 1040


>gi|332308850|ref|YP_004436700.1| heavy metal efflux pump, CzcA family [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332176179|gb|AEE25432.1| heavy metal efflux pump, CzcA family [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1044

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/591 (12%), Positives = 162/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N + V+L ++I   G +  L N    + +D  P       I                  
Sbjct: 11  SNRFFVLLTTLIIVGGGIFTLKN----TPVDALPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F DS        +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLSVPGAKTVRGYSFFGDSYVYIIFDDSTDLYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  + +  L    T      +          +   +           ++       +
Sbjct: 118 APNLPENARPQLGPDATGVGWVYLY-ALVDGTGQNDISQLRSLQDWFLKYELQTVPGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP +LR      + +       N      +  +            
Sbjct: 177 VSALGGMVKQYQVKIDPEKLRAYGIPLSHIQMAIKRGNQEVGASVIEMAEAEYMVRATGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  K +I                    + +  +E G         D    P        +
Sbjct: 237 ISSKQDIE------------------TIPLGVNENGTPLLVRDIADVQLGPQMRRGVAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   TI         L+ G       +           +    
Sbjct: 279 NGEGETVGGIVVMRFGENAQTTINGVKAKLEDLKKGLPDGVEIVTVYDRSALIERAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V    + + +  LVA  SI + +I  + ++ + G    + S+ GI +
Sbjct: 339 ASKLVEEFIVVALVCIAFLFHVRSSLVAIISIPVGIITAIIVMYMQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG   D  I++ E + +   +     ++ +  +    S     +F S +   ++ V +F
Sbjct: 399 AIGAMSDGAIVMIENMHKHMERTPLTKENRWQVVIDSASEVGPALFFSLLIITVSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AI++V  +M + +R K +             + 
Sbjct: 459 TLEAQEGRMFSPLAFTKTYAMAASAALAITLVPVLMGYFVRGKVLAEHKNPVNRFLTFLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                  +R     + ++++     +  +   G  +      G  + +   
Sbjct: 519 MPTLKTVLRFPKLTMLVAVIVLGIGLWPIDKIGSEFIPPLDEGDLMYMPTT 569



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/264 (15%), Positives = 87/264 (32%), Gaps = 18/264 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + L+ V           I  +N        V +      S   T    + +
Sbjct: 780  PIVTPQGKRIALADVADVYIEDGPPGIKSENARLNGWVYVDIDGVDIGSYVVTAQQAVSE 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + +       T         +   +L    +V + ++ I +L+Y+  R     A+  + T
Sbjct: 840  QLVLPAGYSITWSGQYEYMLRAKEKLTY--VVPLTLAIIVILLYLNFRNFIEVAII-MGT 896

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV-----------VYDRMRKNM 748
            L L +  ++    L G  F++      + L G +V   V+           + D+ +   
Sbjct: 897  LPLSMVGSIWLMYLEGFNFSVAVGVGFIALAGVAVEIGVIMLVYLNQEYQALIDKCKSEG 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
               T  +   + +       +   + T+      +LP+      G  V+   A PM  G+
Sbjct: 957  IQPTVGM-LTEAVLHGAGLRVRPVMMTTATIIFGLLPVLYGSGTGSEVMSRIAAPMVGGM 1015

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            V A   ++ I   I L     + K
Sbjct: 1016 VSAILLTLLILPAIYLIWRKQQLK 1039



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 77/228 (33%), Gaps = 8/228 (3%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           G++  G   L            +R  +  L     +       +          G     
Sbjct: 249 GVNENGTPLLVRDIADVQLGPQMRRGVAELNGEGETVGGIVVMRFGENAQTTINGVKAKL 308

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             + + +   +  +         E     ++ +L+ +    ++++ + +       F   
Sbjct: 309 EDLKKGLPDGVEIVTVYDRSALIERAVDNLASKLVEE---FIVVALVCI----AFLFHVR 361

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            +L AI ++ + I   +    + GI  N+ ++  +   IG   +  +V+ + M K+M+  
Sbjct: 362 SSLVAIISIPVGIITAIIVMYMQGINANIMSLGGIAIAIGAMSDGAIVMIENMHKHMERT 421

Query: 752 T-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
             T  +   ++  S +E      ++ +   +S +P+          F+
Sbjct: 422 PLTKENRWQVVIDSASEVGPALFFSLLIITVSFVPVFTLEAQEGRMFS 469


>gi|237713996|ref|ZP_04544477.1| cation efflux system protein [Bacteroides sp. D1]
 gi|262407048|ref|ZP_06083597.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644855|ref|ZP_06722595.1| heavy metal efflux pump, CzcA family [Bacteroides ovatus SD CC 2a]
 gi|294809782|ref|ZP_06768466.1| heavy metal efflux pump, CzcA family [Bacteroides xylanisolvens SD
           CC 1b]
 gi|229445820|gb|EEO51611.1| cation efflux system protein [Bacteroides sp. D1]
 gi|262355751|gb|EEZ04842.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639793|gb|EFF58071.1| heavy metal efflux pump, CzcA family [Bacteroides ovatus SD CC 2a]
 gi|294443022|gb|EFG11805.1| heavy metal efflux pump, CzcA family [Bacteroides xylanisolvens SD
           CC 1b]
          Length = 1032

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/679 (11%), Positives = 183/679 (26%), Gaps = 48/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   +V    ++   G   A+   +        P+ +     +       G       
Sbjct: 10  LHNRLVVVCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L V+  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 VVSESLPVNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +   + DP R+R    +  ++       N +  G +             
Sbjct: 174 AQVAVLGGDIKEYQIQLDPERMRHYGISMGEVMAVTQDMNLNANGGVLYEFGNEYIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++    +               V                   IG     +   
Sbjct: 234 LSTSKTEQLGKAVVKTVNNFPVTLEDIADVT------------------IGPKAPKLGTA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +   I    A  +   T +    L  + +     +K++    R       S  
Sbjct: 276 SERGKSAVLMTITKQPATSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+
Sbjct: 336 NVKKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+    +        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVYKRLRENRQKAKAERLSTLEVVFNASKEVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDIN 526
           + V LFF  G   R      +   +++  S   A+++   +  ++    +  K       
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGVAFIVALFASTVVALTLTPVLCSYLLGSNKTNKKLKEAPL 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +       R        LF +                 +G   + + + 
Sbjct: 516 ARWMKGIYEKALTWVLAHKRVTLGSTIALFVVALGVFFTLGRSFLPSFNEGSFTINISSL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   ++            R +            +E   +      
Sbjct: 576 PGISLEESNKMGHRAEELLMTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSR 635

Query: 647 PLSTIQNTEIVGPKISREL 665
                   E +G      +
Sbjct: 636 SELVADVREKLGTITGANI 654



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 87/266 (32%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      D+++     +     +                         +  + 
Sbjct: 248 KTVNNFPVTLEDIADVTIGPKAPKLGTASERGKSAVLMTITKQPATSTLELTDKLEASLK 307

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         L 
Sbjct: 308 DLQKNLPPDVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTLI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLY 751
           ++ TL L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +  
Sbjct: 365 SLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRQKA 424

Query: 752 T-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +S  +++  +  E     + +++   +S +P+    G    ++    +     +  
Sbjct: 425 KAERLSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGVAFIVALFA 484

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N ++
Sbjct: 485 STVVALTLTPVLCSYLLGSNKTNKKL 510



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 101/268 (37%), Gaps = 11/268 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++  + N  VD +  R    S     +S    +      V+ +     +VA  
Sbjct: 766  VKDDARDEIEKIRNLMVDTNDGRKVPLSYVAEVVSAMGPNTINRENVKRKIVISANVADR 825

Query: 633  RVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +  +V      I     +        G +   E      + +      ++I++ +  ++
Sbjct: 826  DLRSVVNDIQKRIDTSVQLPEGYHIEYGGQFESEQAASRTLALTSFISIVVIFLLLYNEF 885

Query: 691  YFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +  L L +    G FAL     E  + A+   ++L G +  + +++      N
Sbjct: 886  RSVKESGVILLNLPLALIGGVFALVITTGEVCIPAIIGFISLFGIATRNGMLLISHY--N 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAF 803
                   ++  D + +   + L   + T++++ ++++P+A+     G+ I S  A  +  
Sbjct: 944  HLQKEEGLNVYDSVIRGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++ +   + FI   + L ++  +A+ +
Sbjct: 1004 GLLTSTFLNGFIVPIVYLMMHRKKAQES 1031


>gi|160940081|ref|ZP_02087426.1| hypothetical protein CLOBOL_04970 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436661|gb|EDP14428.1| hypothetical protein CLOBOL_04970 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1017

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 82/672 (12%), Positives = 219/672 (32%), Gaps = 42/672 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+    +   GL   +     +S L+  P       I            V   
Sbjct: 8   LRRPVSTVLAILCLIVFGLSSVM-----KSPLELMPDMNMSMMI---------VMTVYSG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D V+  +    ++  S L          ++  + + L +       +  D +   + 
Sbjct: 54  ASPDDVSELVTKPIEDRASTLSGLDTISSQSKENMSIVMLKYKYGTDMNDAYDDLKKQMD 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L  D    +++         V+   +  +      +    +  + + +     + 
Sbjct: 114 LAKVELPEDADDPIMLELNTSLKPNVIMAVSHGEDD----DLYNYVNNEIVPEFEKLSTA 169

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +  +   +  E  P +L+Q   + + ++      + +       V   + S   +
Sbjct: 170 AEVSITGGLQKYIKVELMPEKLKQYGVSMSSIASDIAGSDITYPAGDTQVGDQKLSVSTE 229

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              E    ++ I L  +       +    V +  D++ +   ++                
Sbjct: 230 QPFETMDSLNDIPLTVSGGQTVYLSDVAKVYMGADDVESIARYKAENGLPED-------- 281

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  I     S +   +     +    +   L A    ++   + + +  + + S S
Sbjct: 282 -------IVALTVSKQQDAATLNVSKDVKRVVNELTAKDPSLQ-ITIVDDDKDSIMSSLS 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   + ++++++     K  ++   SI ++++ +L L+ L+G +L + +++ +
Sbjct: 334 SVIETMVLAIIISMVIIWLFFGDLKASMIVGSSIPVSILSSLILMQLMGFSLNVITLSAL 393

Query: 421 VLGIGLAVDSNILVNERIREENRK--NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           VLG+G+ VD++ +V E           +    +   G    Y ++  S +T  +  + L 
Sbjct: 394 VLGVGMMVDNSTVVLESCFRATDDTGFREFSKAALNGTGVVYQSVIGSTLTTCVVFLPLA 453

Query: 479 FFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
             GG      R    T+   +  S+ +AI++V    +     +K  +    P+ +     
Sbjct: 454 MLGGMTGQMFRPLGFTIVFCMTASLISAITVVPLCYMIYKPVEKKTAPLSRPVEKMQEAY 513

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             I  + +  R   +  S+   + S  +     +    +   G    +     V   +  
Sbjct: 514 RGIMTKLLNKRGLVMLASVALLLFSFFIAKFLRVEMMAEDDQG---QISITAEVKPGMTI 570

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++ +        +  G+    + L    G S++    + +  KK  ++     ++  +
Sbjct: 571 DKVDHIMKQIEDIISQQGDVESYITLAGSSGLSMSSDPNITVYLKKDRKMETDEVVRLWK 630

Query: 656 IVGPKISRELIR 667
                IS   I 
Sbjct: 631 QQLGGISDTNIT 642



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 89/286 (31%), Gaps = 9/286 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+      I +   +             + +   +   +++             S 
Sbjct: 732  TTPTSLNIDGNDIDVKVEYPKERYKTLDQIETITLQTPKGSSVALTDVADIHFADSPASI 791

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
               D +    +   Y          +L     +       +       +   ++ E    
Sbjct: 792  TRQDKQYRATISGIYTENSDKNTKALLLSEVVQPAVSDNANVTIAQNQMDESMTEEFT-A 850

Query: 669  GIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
                + ++   + + +  +F+   F++  +TT+   +    G   L     ++T++   L
Sbjct: 851  LFQAIALAIFLVFVVMAAQFESPKFSIMVMTTIPFCLIGAFGLLWLADSAISMTSLLGFL 910

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L+G  VN+ ++  D     +  Y   +     + ++    L   + T++   +S++PMA
Sbjct: 911  MLVGTVVNNGILYVD----TVNQYRREMDLNTALVEAGATRLRPILMTTLTTVVSMVPMA 966

Query: 788  VW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +     GS     A+    G+  +   S+ +       +     K 
Sbjct: 967  LALGDSGSTTQGLALVNIGGLTASTILSLLMLPAYYSLMNGGGKKR 1012



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 96/297 (32%), Gaps = 15/297 (5%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                           + T      +D    I L V   + V LS V          +  
Sbjct: 210 ITYPAGDTQVGDQKLSVSTEQPFETMDSLNDIPLTVSGGQTVYLSDVAKVYMGADDVESI 269

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +           +            +      K       +   + +I      ++ I 
Sbjct: 270 ARYKAENGLPEDIVALTVSKQQDAATLNVSKDVKRVVNELTAKDPSLQITIVDDDKDSIM 329

Query: 668 KGIVGVI----ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             +  VI    ++ I  ++ IW+ F     ++   +++ + I  +L    L G   N+  
Sbjct: 330 SSLSSVIETMVLAIIISMVIIWLFFGDLKASMIVGSSIPVSILSSLILMQLMGFSLNVIT 389

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG---RSVYTSMAA 779
           ++A++  +G  V++  VV     ++    T    FR+    ++N T       + +++  
Sbjct: 390 LSALVLGVGMMVDNSTVVL----ESCFRATDDTGFREFSKAALNGTGVVYQSVIGSTLTT 445

Query: 780 FISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +  LP+A+ GG    +       + F +  +  S+I +     +       K A +
Sbjct: 446 CVVFLPLAMLGGMTGQMFRPLGFTIVFCMTASLISAITVVPLCYMIYKPVEKKTAPL 502


>gi|83645777|ref|YP_434212.1| putative silver efflux pump [Hahella chejuensis KCTC 2396]
 gi|83633820|gb|ABC29787.1| putative silver efflux pump [Hahella chejuensis KCTC 2396]
          Length = 1044

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/604 (12%), Positives = 163/604 (26%), Gaps = 40/604 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + V+L + I     L AL N    + +D  P       I                   
Sbjct: 12  NRFFVLLATFILVGWGLHALRN----TPIDAIPDLSDVQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +                         + + + F D         +V  +L  V+
Sbjct: 59  QVVQDQVTYPLTTAMLSAPGAQTVRGFSFFGDSYVYVIFKDGTDLYWARSRVLEYLSQVS 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +L       L    T                     +           ++       + 
Sbjct: 119 GQLPSAATPQLGPDATGVGWVYAY-ALADRSGGHDIGQLRAIQDWFLKFELQTVPGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q   + DP+RLR      A +       N      +  +            +
Sbjct: 178 ATVGGMVKQYQVQVDPNRLRAYGVPLAHIKAAIQKGNRESGASVIEMAEAEYMVRVTGYI 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +   E+                    + +  +  G     E   D +  P        + 
Sbjct: 238 QGIDELK------------------KIPLGLNANGTPLLLEDVADIVIGPQMRRGIAELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   +   +   +   TIE        L+ G       I           + +   
Sbjct: 280 GEGEVVGGVIVMRFGENAQETIEGVKERLEELKKGLPEGVEVIPTYDRSHLIERAVNNLY 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   +V ++  + + + +  LV   S+ + ++    ++   G    + S+ GI + 
Sbjct: 340 EKLLEEFVVVTVICALFLFHLRSSLVIIVSLPIGILAAFIVMQHQGVNANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG  VD  I++ E + +   +      + +  +    S     +F S +   ++ + +F 
Sbjct: 400 IGAMVDGAIVMVENVHKHMERTPLTAENRWRVIADAASEVGPPLFFSLLIITMSFLPVFT 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  +   AI++V  +M + IR K               +  
Sbjct: 460 LEAQEGKLFAPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVTPEHKNPLNRLLTALYR 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
            +    ++  +  +G SIL     +  +            +G +         V +   R
Sbjct: 520 PVIRGVLKHPWLAIGFSILLLAVGVWPVNKLGAEFMPPLDEGDLMYMPTTYAGVSIEEAR 579

Query: 596 SNLE 599
             L+
Sbjct: 580 EVLQ 583



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 81/259 (31%), Gaps = 16/259 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   A + + L+ V           I  +N       LV ++ +   S        + +
Sbjct: 780  PVVTAAGQRIALADVADIYIEDGPPAIKSENARLNGWTLVDIEGRDLGSYVGEAQKVVAE 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +                   +   +L    +V + +  I +L+Y+  R  +   L  + T
Sbjct: 840  QVDVPPGYSIAWSGQYEYMLRAKEKLT--LVVPLTLMIIVVLLYMNFR-NFVEVLIIMGT 896

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-------DRMRKNMKLYT 752
            L   +   +    L     ++      + L G +V   V++          +R+  +   
Sbjct: 897  LPFALVGGVWLLYLLDYNLSVAVGVGFIALAGVAVEIGVLMLVYLNQSLAAVREQAEQQG 956

Query: 753  T---SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                       + +     +   + T  A  + ++P+ +    G  V+   A PM  G++
Sbjct: 957  RPLNRNDLLTAVMQGAGLRVRPIMMTVAAIVVGLIPIMLGEGTGSEVMQRIAGPMIGGML 1016

Query: 807  VAASSSIFIAAPILLFIYD 825
               + ++ +   +      
Sbjct: 1017 STLALALLVIPALYYLWRR 1035



 Score = 45.5 bits (105), Expect = 0.040,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 69/187 (36%), Gaps = 4/187 (2%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    +   +            LE +KK + E V +    +   +  +    L  K +  
Sbjct: 286 GGVIVMRFGENAQETIEGVKERLEELKKGLPEGVEVIPTYDRSHLIERAVNNLYEKLLEE 345

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++  +   +++   F    +L  I +L + I          G+  N+ ++  +   IG 
Sbjct: 346 FVVVTVICALFL---FHLRSSLVIIVSLPIGILAAFIVMQHQGVNANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            V+  +V+ + + K+M+    +   R  +I  + +E      ++ +   +S LP+     
Sbjct: 403 MVDGAIVMVENVHKHMERTPLTAENRWRVIADAASEVGPPLFFSLLIITMSFLPVFTLEA 462

Query: 792 SVIGSFA 798
                FA
Sbjct: 463 QEGKLFA 469


>gi|116671096|ref|YP_832029.1| acriflavin resistance protein [Arthrobacter sp. FB24]
 gi|116611205|gb|ABK03929.1| acriflavin resistance protein [Arthrobacter sp. FB24]
          Length = 1072

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 58/510 (11%), Positives = 146/510 (28%), Gaps = 38/510 (7%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
             L ++I     +  +         +  PS                    +     + V+
Sbjct: 12  RALIALITVFASVFGVITM-SSLKQELIPSIEFPQIT---------VISAMPGASPEVVD 61

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   + ++       + R   ++IT+ F      +   +++   +      L 
Sbjct: 62  KQVSGPLETALNGVEGLESTSSTSRTGVSQITMVFTYGSNLDRARNQIDRAISNAKRALP 121

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
            D +   +   +  +  IV    + D+      E + ++ R  + ++   +       + 
Sbjct: 122 DDVQPQAIA-GSISDFPIVFLAVSSDKP---LSELNADLQRLSVPRLQKLDGVRGADVTG 177

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                +     P  +         +S                        G    ++   
Sbjct: 178 GASQHIQILPRPEAMAAKGANIQSISNALKNNGALIPAGTIE------EQGKTLSLQIGS 231

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +  +                 V               +  ++     +           
Sbjct: 232 PVDSLD---------------AVRALPLSGAKDAATIGSVADVSIKDDLRTSITRTNGKE 276

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
                 + K +                L A                    S         
Sbjct: 277 TLALSVTKKPEGDTVAISHAVKDSIGQLEAELGSNAKFTPVFDQAPFIEKSIKDLTTEGL 336

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           +  G  + V+ + ++  +  LV   SI L++++T   LS  G +L + ++  + + IG  
Sbjct: 337 LGLGFAVAVILVFLMSVRSTLVTAVSIPLSLLITFIGLSATGYSLNILTLGALTIAIGRV 396

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGA 484
           VD +I+V E I+      ++   ++          I  S +T +   + + F G   G  
Sbjct: 397 VDDSIVVIENIKRHLSYGETKLSAILTSIREVAGAITASTLTTVAVFLPIAFVGELAGEL 456

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFI 514
            R FA+T+ +++L S+  +++IV  +  + 
Sbjct: 457 FRPFALTVTIALLSSLLVSLTIVPVLAYWF 486



 Score = 79.0 bits (192), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 79/199 (39%), Gaps = 9/199 (4%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
           A    +  ++ ++      + + +      K  ++L  +G++G+  +   +L+++     
Sbjct: 296 AVKDSIGQLEAELGSNAKFTPVFDQAPFIEKSIKDLTTEGLLGLGFAVAVILVFLM---S 352

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L    ++ L +  T    +  G   N+  + A+   IG  V+D +VV + ++   +
Sbjct: 353 VRSTLVTAVSIPLSLLITFIGLSATGYSLNILTLGALTIAIGRVVDDSIVVIENIK---R 409

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIV 806
             +   +    I  SI E  G    +++      LP+A  G   G +   FA+ +   ++
Sbjct: 410 HLSYGETKLSAILTSIREVAGAITASTLTTVAVFLPIAFVGELAGELFRPFALTVTIALL 469

Query: 807 VAASSSIFIAAPILLFIYD 825
            +   S+ I   +  +   
Sbjct: 470 SSLLVSLTIVPVLAYWFLK 488



 Score = 77.4 bits (188), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/157 (17%), Positives = 64/157 (40%), Gaps = 6/157 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            +I +         L  + ++    T  +      G+   L ++  +L L+G  V + +V+
Sbjct: 873  VIMVAAFKSLIQPLILLVSVPFAATGAVALLLATGVPLGLPSLIGMLMLVGIVVTNAIVL 932

Query: 741  YDRMRKNM--KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI- 794
             D + +    +     ++  D I     + L   + T++A   ++ PMA+    GG  I 
Sbjct: 933  IDLINQYRQPRNGRPGMNVADAITHGARQRLRPILMTALATVFALTPMALGLTGGGGFIS 992

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               A+ +  G+V + + ++ +   +   +   R K A
Sbjct: 993  QPLAVVVIGGLVSSTALTLVLVPVLYRLVEGRREKKA 1029


>gi|238060797|ref|ZP_04605506.1| acriflavin resistance protein [Micromonospora sp. ATCC 39149]
 gi|237882608|gb|EEP71436.1| acriflavin resistance protein [Micromonospora sp. ATCC 39149]
          Length = 1083

 Score =  126 bits (315), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/519 (12%), Positives = 154/519 (29%), Gaps = 41/519 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   + ++  +    GL               FP A                  V     
Sbjct: 11  NRGLVALIAVVTTLFGLFAVPSLKQQLLPSLEFPGAF--------------VVAVYPGAA 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        + R+  + + + F      +N+ +K+   L  +
Sbjct: 57  PEIVESQVTEPIENSLQGIPGLEKVTSTSREGSSTVQVEFTFGTDLDNVVNKMETALNRI 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S+L       +L  TT+   ++VL+ +        A      +    + ++   +    
Sbjct: 117 DSQLPESVDPQVLTGTTDDLPAVVLAASGGGDERVLAERLRDAV----VPELEAIDGVRT 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            + +      +    DP++L         +         +               G    
Sbjct: 173 VVVTGTRDQVVTVTPDPAKLAAAKLAPTAIGTALKTNGVAVPAGAVSDGSRALIVGVGTP 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++ GI L                        A          + + LA       
Sbjct: 233 IRSLDDLKGIVLVPTAPK------------------AAPVKLGDVATVAQQLAPATSFTR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +     +            A LR+         V          S    
Sbjct: 275 TNGRDSLGIAVTAAPDGNTVEISHEIRERLADLRS--ASGAELTVVFDQAPFVEKSIESL 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   + ++V+ + +L  +  +V   SI L+V++ L  L +   +L L ++  + +
Sbjct: 333 TTEGLLGLVMAVVVILVFLLSVRSTVVTAVSIPLSVLVALIALWIGDYSLNLLTLGALTI 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G  VD +I+V E I+      +    ++          +  S +T +     +   G 
Sbjct: 393 AVGRVVDDSIVVLENIKRHLEYGEPKRAAILTAVREVAGAVTASTLTTVAVFAPIALVGG 452

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
             G     FAIT+ +++L S+  +++++  +  + ++ K
Sbjct: 453 FVGQLFAPFAITVTVALLASLLVSLTVIPVLAYWFLKSK 491



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 9/232 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              L V   R + +  V+ +  +        Q                          + 
Sbjct: 761 QPPLTVEELRALRVGPVKLDDIADITQAEGPQQVTRIDGERSVTVTGTATGSNLGATTKE 820

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
           ++KK+  I       +   V    S      G+  V+ +   + + +   F+    AL  
Sbjct: 821 LQKKLDAIDVPGATMSIGGVSADQSEAFADLGL-AVLAAIAIVFLIMVATFRSLTQALIL 879

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
           + ++    T  +G     G    + A+  VL L+G  V + +V+ D + +        + 
Sbjct: 880 LISVPFAATGAIGLLLATGTPLGVPALIGVLMLVGIVVTNAIVLLDLINQYRAQ---GMG 936

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFG 804
             + + +     L   + T++A   ++LPMA      GG +    AI +  G
Sbjct: 937 VNEAVVEGGRRRLRPILMTAVATIFALLPMAFGLTGEGGFISKPLAIVVIGG 988



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 59/142 (41%), Gaps = 7/142 (4%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             L  +G++G++++ + +L+++         +    ++ L +   L    +     NL  
Sbjct: 330 ESLTTEGLLGLVMAVVVILVFLL---SVRSTVVTAVSIPLSVLVALIALWIGDYSLNLLT 386

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+   +G  V+D +VV + ++   +        R  I  ++ E  G    +++     
Sbjct: 387 LGALTIAVGRVVDDSIVVLENIK---RHLEYGEPKRAAILTAVREVAGAVTASTLTTVAV 443

Query: 783 VLPMAVWGGSVIGSFA-IPMAF 803
             P+A+ GG V   FA   +  
Sbjct: 444 FAPIALVGGFVGQLFAPFAITV 465


>gi|239940649|ref|ZP_04692586.1| putative integral membrane efflux protein [Streptomyces roseosporus
           NRRL 15998]
 gi|239987129|ref|ZP_04707793.1| putative integral membrane efflux protein [Streptomyces roseosporus
           NRRL 11379]
 gi|291444086|ref|ZP_06583476.1| integral membrane efflux protein [Streptomyces roseosporus NRRL
           15998]
 gi|291347033|gb|EFE73937.1| integral membrane efflux protein [Streptomyces roseosporus NRRL
           15998]
          Length = 1051

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 60/517 (11%), Positives = 152/517 (29%), Gaps = 30/517 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  +I  + L+      +PQ      P+        L            +  
Sbjct: 6   RFSLAQRALIGLISIVALVFGA-IAIPQLKQQLLPTIELPMVSVLAP---------YQGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF-KENIADKVTLFLQ 120
             D V   +    +     +        +  +    I  +F       + +   +   + 
Sbjct: 56  SPDVVEKQVVEPLENSLKAVDGVESVTSTASEGNALIMATFDFGDEGTKQLVADIQQAVN 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L  D    ++  +T+   ++VL+  + +   +     +  + R  +  +   E  
Sbjct: 116 RARAQLPSDVDPQVIAGSTDDIPTVVLAVTSDEDQQT----LADRLDRTVVPALQDIEGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q        +Q+    D  +L         ++        +     F       +    
Sbjct: 172 GQVTVDGVQDLQVSVVPDDRKLAAAGLNAGTLAQALQSGGATVPAGSFSESGKSRTIQVG 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  +I  + +                     +   +         + +  +  +  
Sbjct: 232 GAYTSLKQIEDLQVVAKDPAG------------GADGPGKPVRLGDVAEVKQEPSTAVSI 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      + +     S     +        LR          V      A   S S
Sbjct: 280 TRTNGKPSLAVMATMDKDGSAVAISDAVKDKLPDLRKDLGAGADLTVVSDQGPAVSKSIS 339

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A+     +IV+ + +   +  LV   SI L+++L L +L     +L + ++  +
Sbjct: 340 GLTTEGALGLVFAVIVILVFLASIRSTLVTAVSIPLSIVLALIVLWTRDLSLNMLTLGAL 399

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD +I+V E I+      +    ++          +  + +T +   + +   
Sbjct: 400 TIAIGRVVDDSIVVLENIKRHLGYGEERHAAIINAVKEVAGAVTSATLTTVAVFLPIGLV 459

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG        F++T+  ++L S+  ++++V  +  + 
Sbjct: 460 GGMVGQLFGSFSLTITAALLASLLVSLTVVPVLSYWF 496



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 66/179 (36%), Gaps = 10/179 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE---LIRKGIVGVIISAIAMLIYIW 685
                V + +     ++   + +      GP +S+    L  +G +G++ + I +L+++ 
Sbjct: 302 AISDAVKDKLPDLRKDLGAGADLTVVSDQGPAVSKSISGLTTEGALGLVFAVIVILVFLA 361

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L    ++ L I   L       +  N+  + A+   IG  V+D +VV + ++
Sbjct: 362 ---SIRSTLVTAVSIPLSIVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK 418

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-IPMAF 803
              +           I  ++ E  G     ++      LP+ + GG V   F    +  
Sbjct: 419 ---RHLGYGEERHAAIINAVKEVAGAVTSATLTTVAVFLPIGLVGGMVGQLFGSFSLTI 474



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/199 (14%), Positives = 67/199 (33%), Gaps = 8/199 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                              V   +  KI  +        T     +   E   +  + ++
Sbjct: 803 DGQRSATVTAKPVGDNTGAVSTDLAAKIDALDLPEGATATIGGVTEDQNEAFMQLGLAML 862

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +   F+     L  + ++    T  L    + G    + A+  +L LIG  
Sbjct: 863 AAIAIVFMLLVATFRSLVQPLILLVSVPFAATGALALLLITGTPLGVPAMIGMLMLIGIV 922

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
           V + +V+ D + +        +   + + +         V T++A   ++LPMA+     
Sbjct: 923 VTNAIVLIDLINQYRAQ---GLGIMEAVIEGGRHRFRPIVMTALATIFALLPMALGVTGE 979

Query: 790 GGSVIGSFAIPMAFGIVVA 808
           GG +     + +  G++ +
Sbjct: 980 GGFISQPLGVVVIGGLISS 998


>gi|227501910|ref|ZP_03931959.1| MmpL family membrane protein [Corynebacterium accolens ATCC 49725]
 gi|227077404|gb|EEI15367.1| MmpL family membrane protein [Corynebacterium accolens ATCC 49725]
          Length = 717

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/479 (13%), Positives = 143/479 (29%), Gaps = 45/479 (9%)

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +      L  +  LA+L+              +LG+GLA+D  + +  R REE  K  S 
Sbjct: 202 IVGGLSILGSLGILAVLAGFLQVNVFAQAVVTLLGLGLAIDYGLFMVSRFREELDKGSST 261

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             ++    + A  T+  S     +A   LF F    ++  A     ++ ++   +++++ 
Sbjct: 262 KDAVSTTTATAGQTVVFSAAMVAVALSGLFLFPQAFLKSVAYGSISAVGLAALLSVTVLP 321

Query: 509 AMMIFIIRYKKMKSIDINPLSRFFLIPDCIA----IQFMRARFWGVGISILFSI------ 558
           A+   +     + S+     +   +              RA+   + I  L         
Sbjct: 322 ALFGMLGPKIDLWSVRRTSRTARTIQDTWWYKLPRWAMRRAKGLTLAICGLLIALALPIM 381

Query: 559 ----------------CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                            +     T    +       ++L V       L  V   +  L 
Sbjct: 382 SITFGGINETYLPPNHDTRVAQDTFNDEFPAFRTEPVKLVVENATNEQLVDVVMQVRGLD 441

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                        +    L     D     R++  ++           +  T  +  +  
Sbjct: 442 GLTEPMGPSTATMDGTTVLSAGIKDREDYARIVHELEDVKAPEGVNLYVGGTPAMEVESL 501

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF------- 714
             L  K     +   +A  I + + F  +   + AI   +L +  TLG   L        
Sbjct: 502 DALFHKLPWMALYVVLATFILMALVFGSFVLPIKAIVMTLLTLGATLGILTLMFVIGVGS 561

Query: 715 -------GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G   +   V  +  + G S + +V +  RM +  +      S  + I      
Sbjct: 562 GALNFSPGPLMSPILVLIIAIIYGLSTDYEVFLVSRMVEARR---RGDSTDEAIAAGTAH 618

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYD 825
           T G     ++   +           ++   A  M F +++      + +   ++  + +
Sbjct: 619 TGGIITAAALIMIVVAGAFGFSDIVMMKYIAYGMIFALLIDATIVRMLLVPAVMHLLRE 677



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 53/141 (37%), Gaps = 6/141 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALF-GIEFNLTAVAAVLTLIGYS--VNDKVVVYDRMR 745
               A   +    L I  +LG  A+  G         AV+TL+G    ++  + +  R R
Sbjct: 193 SVVAAFMPLIVGGLSILGSLGILAVLAGFLQVNVFAQAVVTLLGLGLAIDYGLFMVSRFR 252

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           + +       S +D +  +        V+++    +++  + ++  + + S A      +
Sbjct: 253 EEL---DKGSSTKDAVSTTTATAGQTVVFSAAMVAVALSGLFLFPQAFLKSVAYGSISAV 309

Query: 806 VVAASSSIFIAAPILLFIYDW 826
            +AA  S+ +   +   +   
Sbjct: 310 GLAALLSVTVLPALFGMLGPK 330


>gi|320106521|ref|YP_004182111.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
 gi|319925042|gb|ADV82117.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
          Length = 1089

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/519 (11%), Positives = 151/519 (29%), Gaps = 41/519 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V++  +I  +G++  L         D FP+                       
Sbjct: 8   LRRPYTFVVMAVLILVLGIVSIL-----TMSTDIFPTIDIPVVT---------IVWTYSG 53

Query: 61  DEDDFVNGFLQMYSDELRSF-LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              D +       S+   +  +              + I + F      +    +VT   
Sbjct: 54  TSPDEMEKRFTTISERAMTTAVNDIEHIESQSVSGISIIKVFFQPGAKVDGAIAEVTAVN 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q +   L        ++  +   + I+ +  + D++     +     +     Q+   + 
Sbjct: 114 QTILRILPPGTTPPFILQFSASNVPILQAVMSSDRLSE--TDLYDLGLNFVRTQLATVQG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       Q+  + D   L     ++  +       N    G    +         
Sbjct: 172 AQVPSPYGGRARQIMVDLDLPSLYAKGLSSTDVVNALTAQNLILPGGDAKIGTTDYIVRT 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                   ++                     +I   ++     +     ++    A+  +
Sbjct: 232 NASPAVVEQL--------------------NNIPVRQVNGAMVYMRDVAHVHSGSAIQQN 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAG-ILAAMLRAGSLPIKLNIVEERNVGADLGS 358
              L             A  S    +      L  ++     P     +          +
Sbjct: 272 IVRLNGQHATLLTIMKGASASTLDIVARVKQRLPLIIANLPPPPPEVRLLFDQSVFVRAA 331

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                    I AGL  +++ + +   +  ++   SI L++++++ LL L G TL   ++ 
Sbjct: 332 LQGVVKEAGIAAGLTALMILLFLGSWRSTVIIAVSIPLSILVSVILLKLCGQTLNTMTLG 391

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+ L +G+ VD   +  E I       + +  ++  G ++     F S +   I  V + 
Sbjct: 392 GLGLAVGILVDDATVEIENIHRNLGLGKEIEPAILDGAAQIAVPAFVSTLAICIVFVPVV 451

Query: 479 FFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           F  G          + +  +++ S   + ++V  M+ F+
Sbjct: 452 FLSGAAKSLFTPLGMAVVFAMMASYLLSRTLVPTMVKFL 490



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 91/283 (32%), Gaps = 11/283 (3%)

Query: 551  GISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
              S+                 G+      Q+    N+   LS +   + +      S  N
Sbjct: 796  IDSVDSLQNMPITGTGSQAAQGMASASANQITPPINQAQMLSNLADIVHTSSPSITSHYN 855

Query: 611  FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                 +  V  Q +    VA+     +   +       +     ++   + S        
Sbjct: 856  VQPVYDVFVNTQGRDLGGVARDIDNVLTPLRKELPKGATLTVRGQVRSMQDS---FTGLG 912

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +G+I +   + + + + F  W      +  L       L    L G  F++ ++   +  
Sbjct: 913  LGMIFAVALVYLLMVVNFQSWLDPFIILMALPGAACGILWILFLTGTTFSVPSLMGAIMT 972

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG +  + +++         L    +        +    L   + T++A  + +LPM++ 
Sbjct: 973  IGVATANSILMVTFANDQRAL---GMDSLSAASSAGFTRLRPVMMTALAMILGMLPMSLG 1029

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               GG         +  G++VA ++++ I  PI   +    A 
Sbjct: 1030 MGEGGEQNAPLGRAVIGGLLVATATTLVIV-PIFYSLLRKNAP 1071



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 79/218 (36%), Gaps = 9/218 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                  L    G S +   ++  VK+++  I+        E+         +R  + GV
Sbjct: 276 NGQHATLLTIMKGASASTLDIVARVKQRLPLIIANLPPPPPEVRLLFDQSVFVRAALQGV 335

Query: 674 I----ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +    I+A    + I +    W   +    ++ L I  ++    L G   N   +  +  
Sbjct: 336 VKEAGIAAGLTALMILLFLGSWRSTVIIAVSIPLSILVSVILLKLCGQTLNTMTLGGLGL 395

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +G  V+D  V  + + +N+ L          I     +    +  +++A  I  +P+  
Sbjct: 396 AVGILVDDATVEIENIHRNLGL---GKEIEPAILDGAAQIAVPAFVSTLAICIVFVPVVF 452

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             G+   S   P+   +V A  +S  ++  ++  +  +
Sbjct: 453 LSGAA-KSLFTPLGMAVVFAMMASYLLSRTLVPTMVKF 489


>gi|317154184|ref|YP_004122232.1| acriflavin resistance protein [Desulfovibrio aespoeensis Aspo-2]
 gi|316944435|gb|ADU63486.1| acriflavin resistance protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 1051

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/525 (12%), Positives = 147/525 (28%), Gaps = 41/525 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++   +I   G +      L        P                          
Sbjct: 10  KPVAVLVGVILIVMFGYIS-----LRTLPYQLSPDVTEPVIT---------VTTTWPGAT 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +++   +        S    Q ++TL+F      +    +V+  L  V
Sbjct: 56  PYEIERDIIEEQEKVLKGIPGLTEMESSSYNGQAELTLTFEIGVNVDTALLRVSNKLDEV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIV-LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             +   +  + ++  T      ++ +    +                +    I       
Sbjct: 116 -PEYPDNTDRPVVSATGASTSPVIWMVMRTLPGNERDVQTYRTFFEDEVRQYIERVPGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++    DP +L     T  ++S      N S      GV           
Sbjct: 175 DLFVGGGRDNEMQIILDPVQLAAYNLTIPQLSGILQKENVSISAGNLGVGRRDYRIRTPA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +I                      I     G  R        +           
Sbjct: 235 EFKTPEDIE--------------------RIVISSSGQHRVMLSDVAKVRHGNEKHSVAM 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK--LNIVEERNVGADLGSD 359
           +             +   +     ++   +   L    L                  G+ 
Sbjct: 275 LHNGVPGMAVGVKPEPGTNVIAMTDSVKTVVDDLNEKILKDNGVTLQWVYDQRPYINGAI 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            + +    I + L ++VLF+ +      L+   SI +++I +  + S  G +L + S+AG
Sbjct: 335 DLVQQNIMIGSVLAIVVLFVFLQSFSSTLIVALSIPISIIGSFIIFSAAGRSLNVVSMAG 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I   +G+ VD+ I+V E I    R  +    +   G    +  +  S +T +   + + F
Sbjct: 395 ISFAVGMLVDNAIVVLENIDRHRRLGKGAVAAAYDGTREVWGAVVASTLTTVAVFLPVVF 454

Query: 480 F---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
                G   +  AI +  +I +S+F ++ ++  +   +    + +
Sbjct: 455 MEQEAGQLFKDIAIAVTCAITLSLFVSVLVIPMLARQLYGVAERR 499



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/245 (13%), Positives = 84/245 (34%), Gaps = 15/245 (6%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V +S + +   +  +  I         +  V          A   +   +  K+ E+  L
Sbjct: 801  VPVSSLVNVERTYSMNQIRHLERQRTVSLQVTPPTDMPLQQAMEIIENSMIPKVREMGLL 860

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
              +                      +++ I   + +   F  + + L  I    + +   
Sbjct: 861  DGLTVRLAGAADKLTVTREALQWNFLLAIIITYLLMSALFGNFVYPL--IILFTIPLASA 918

Query: 708  LGFFAL-------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             GF  L            ++  +   + LIG  VN+ +++  +   N++ +   + +++ 
Sbjct: 919  GGFLGLKLENWFIAAQPLDILTMLGFVILIGVVVNNAILIVHQSLGNVREH--GMDYKEA 976

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I  +    L     ++  +   +LP+AV    G  +       +  G+ ++   +IF+  
Sbjct: 977  ILDATRTRLRPIYMSATTSLFGMLPLAVAPGPGSELYRGLGSVVLGGLALSTVFTIFVIP 1036

Query: 818  PILLF 822
             +L+F
Sbjct: 1037 ALLMF 1041



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 76/213 (35%), Gaps = 8/213 (3%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +T V ++ +K + +          +      + +L+++ I  +I S +A+
Sbjct: 292 TNVIAMTDSVKTVVDDLNEKILKDNGVTLQWVYDQRPYINGAIDLVQQNI--MIGSVLAI 349

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           ++       +   L    ++ + I  +   F+  G   N+ ++A +   +G  V++ +VV
Sbjct: 350 VVLFVFLQSFSSTLIVALSIPISIIGSFIIFSAAGRSLNVVSMAGISFAVGMLVDNAIVV 409

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSF 797
            + +    +                 E  G  V +++      LP+       G +    
Sbjct: 410 LENI---DRHRRLGKGAVAAAYDGTREVWGAVVASTLTTVAVFLPVVFMEQEAGQLFKDI 466

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           AI +   I ++   S+ +   +   +Y    + 
Sbjct: 467 AIAVTCAITLSLFVSVLVIPMLARQLYGVAERR 499


>gi|160896535|ref|YP_001562117.1| CzcA family heavy metal efflux protein [Delftia acidovorans SPH-1]
 gi|160362119|gb|ABX33732.1| heavy metal efflux pump, CzcA family [Delftia acidovorans SPH-1]
          Length = 1061

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 62/599 (10%), Positives = 150/599 (25%), Gaps = 58/599 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-- 62
            WLV+L  +      +        +  +D  P                   +  +     
Sbjct: 13  RWLVLLAVLAMAGLGIY----NYQRLPIDAVPDITNVQ-----------VQINTQASGYS 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    + + + L          R   +++T+ F D          V   +Q  
Sbjct: 58  PLETEQRVTYPIETVMAGLPHLEQTRSLSRYGLSQVTVVFKDGTDIYFARQLVGERIQQA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQIGI 176
              L       L   +T      + +    D            ++           Q+  
Sbjct: 118 RDSLPAGITPTLGPISTGLGEIYLWTVEAEDDAKKPDGTPYTPMDLREIQDWVIKPQLRN 177

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +         +      P +L     T A +       N++              
Sbjct: 178 VPGVTEINSIGGYAKEYLVAPAPEKLAAYGFTLADIVTALQRNNSNVGAGYIE------R 231

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
            G QYL+    ++ GI                + ++       +         +G    +
Sbjct: 232 QGEQYLIRAPGQVGGI--------------ADIREVIVGSAQGQPIRIRDLAEVGLGQEL 277

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                      +           +            A +  G  P    I          
Sbjct: 278 RTGAATDNGREVVLGTVFMLIGENSRTVSRAVDQRMAEINRGLPPGVKAITVYDRTNLVD 337

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            + +  K      A LV+++LF+ +   +  L+    I L+++ T   +     +  L S
Sbjct: 338 KAIATVKKNLVEGAALVVVILFLFLGNLRAALITALIIPLSMLFTFTGMVHYKVSANLMS 397

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIFDS 466
           +  +  GI   +D  +++ E                      F  +      A   +   
Sbjct: 398 LGALDFGII--IDGAVVIVENCVRRLAHAQEARGRSLTRSERFHEVFAAAKEARRPLLFG 455

Query: 467 NITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +  ++  + +F      G      A+T+ +++  +M  +I+ + A +   +  K  +  
Sbjct: 456 QLIIMVVYLPIFALTGVEGKMFHPMALTVVIALAGAMLLSITFIPAAIALFMGDKVAEKE 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           +             +A             ++  ++  +              +G   + 
Sbjct: 516 NRLMGWARRGYAPVLARVMAAPAVVLTAAAVAVALSLLLATRLGSEFAPNLNEGDFAIQ 574



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 74/214 (34%), Gaps = 8/214 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + + +      Q    +    + +          + V E  +K     +P        
Sbjct: 808  SAVATFETAPGPNQVSREDGKRRIVVSANVRGRDMGSFVGEAQQKLQGLSLPPGYWTRWG 867

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                 +     R+  + V ++ + + + ++  F      L   T +   +T  +    L 
Sbjct: 868  GTFENL-ESATRRLQIVVPVALLMVFVLLFAMFGNVRDGLVVFTGIPFALTGGILALWLR 926

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             I  +++A    + L G +V + +V+   +R    L     S  D + +     L   + 
Sbjct: 927  DIPLSISAAVGFIALSGVAVLNGLVMISWIR---TLREQGASVPDAVTEGALTRLRPVLM 983

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            T++ A +  +PMA+    G  V    A  +  GI
Sbjct: 984  TALVASLGFVPMAIATGTGAEVQRPLATVVIGGI 1017



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 85/270 (31%), Gaps = 21/270 (7%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+        +   +L  + +G         +    V L          +R +     +
Sbjct: 252 EVIVGSAQGQPIRIRDLAEVGLGQELRTGAATDNGREVVLGTVFMLIGENSRTVSRAVDQ 311

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV------IISAIAMLIYIWIRFKWYFALG 695
               +        + +       L+ K I  V        + + +++++        AL 
Sbjct: 312 RMAEINRGLPPGVKAITVYDRTNLVDKAIATVKKNLVEGAALVVVILFL-FLGNLRAALI 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MR------KNM 748
               + L +  T      + +  NL ++ A+    G  ++  VV+ +  +R      +  
Sbjct: 371 TALIIPLSMLFTFTGMVHYKVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQEAR 428

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
               T       +  +  E     ++  +   +  LP+    G    +    A+ +   +
Sbjct: 429 GRSLTRSERFHEVFAAAKEARRPLLFGQLIIMVVYLPIFALTGVEGKMFHPMALTVVIAL 488

Query: 806 VVAASSSI-FIAAPILLFIYDW-RAKNARI 833
             A   SI FI A I LF+ D    K  R+
Sbjct: 489 AGAMLLSITFIPAAIALFMGDKVAEKENRL 518


>gi|74316920|ref|YP_314660.1| heavy metal efflux pump CzcA [Thiobacillus denitrificans ATCC
           25259]
 gi|74056415|gb|AAZ96855.1| heavy metal efflux pump CzcA [Thiobacillus denitrificans ATCC
           25259]
          Length = 1036

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 79/657 (12%), Positives = 185/657 (28%), Gaps = 49/657 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN   +V+LY ++    ++ A         +D FP   P               + ++ 
Sbjct: 10  LRNRVTVVLLYLILAGAAIVAA-----RNMAVDVFPEYAPP-------------QVQIQT 51

Query: 61  DEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +   +    V   +    + +            +     ++IT+ F            + 
Sbjct: 52  EVPGYSAGDVETLVTRPIEVVLQGAPYVDQIRSNSSVGLSRITIVFEWGVDIYRARQIIQ 111

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +Q V  +L    +   L+  T     ++              E    +     +++  
Sbjct: 112 ERMQAVQGQLPSGAQTPQLMPVTSAVSWLLKFALVDWSGADREHELRTLVDWDIRNRLLA 171

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                  +     + Q     DP R+R+   + A ++      N    G           
Sbjct: 172 QPGVASVVAVGGGVKQYQVLLDPLRMRKYGVSVAMVADALRSANLVAPGGFVYPSAE--- 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                              +     G         +        
Sbjct: 229 ---------------EEYFIRANGKVASLRDVAETLVVMRDGQPIHIGDIAEVRFGSEIK 273

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
             +G++   P +   +       +   T     +LA+M +     ++L     R      
Sbjct: 274 RGEGQIHGGPAVIGTVSKLWGADTMETTRNVEKVLASMAQNLPEDVELIPHVFRQASFID 333

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    +      + +V +VL + +   +   ++  +I  +++  + +L     ++   +
Sbjct: 334 ASIDNLRDALLHSSIIVALVLLLFLFRWRPTAISLIAIPTSLMAGVLVLWAFDISINALT 393

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITA 470
           + G+V  IG  VD  I+  E I    R+N            +  G     +++  + +  
Sbjct: 394 LGGLVFAIGEVVDDAIIDVENILRRLRENARAVAPLPALDIVYEGSREIRNSVVFATLII 453

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           L+A   +FF     G   +  AI    +I  S+  AI++V  +  +++  ++        
Sbjct: 454 LVAFTPIFFLQGIEGRIFQPMAIAYLAAIASSLIVAITLVPVLSYYLMGREQRAREYGLG 513

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
               FL+     +      +          + +   +   GL             V+A  
Sbjct: 514 PVSEFLLGRYERLLQCLLAWPLTVAVATLLLVAAAAIAFAGLGRSFIPPFHEGNLVIATT 573

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            +  + +  NL   +  +          +   R      D  AQ          +  
Sbjct: 574 MMPGTSLEENLRMGREVERRVGEMPEVASLAQRAGRSRLDEDAQPVNFSEFDIALKP 630



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/251 (12%), Positives = 88/251 (35%), Gaps = 7/251 (2%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +    P  + V   +L    +    +            +Q+          V E   + 
Sbjct: 779  EIPLISPEGVVVPLRDLARFTVVQEPYMINRDSGARRAVVQWNTEGRDLDGVVREAQARI 838

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
               +              +  +   R  ++    + + + + ++  F+  ++L  +  L 
Sbjct: 839  RDTVELPPGYAIEIGGDFEGQQRATRSLLLSGTAALVLITLIMFHAFR-NWSLVMLIMLN 897

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L +    G FAL   G   N++++  ++ L G +  + +++  R   ++      +   +
Sbjct: 898  LPLALIGGVFALLLAGETLNVSSMIGMVALFGVATRNSLLLVSRYL-HLMEAEPQLGAAE 956

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            L  +   + L   + T+  A ++V P+      G  +    AI +  G++ +   ++ + 
Sbjct: 957  LAVRGARDRLVPILLTAFTAALAVTPLIFGDPTGKEMERPLAIVLLGGMLSSTLLNLVVI 1016

Query: 817  APILLFIYDWR 827
              +  ++   R
Sbjct: 1017 PTLFHWLAARR 1027



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 88/261 (33%), Gaps = 10/261 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              + +   +P+ +  +       +I     Q   G        +    D++  TR +E 
Sbjct: 247 ETLVVMRDGQPIHIGDIAEVRFGSEIKRGEGQIHGGPAVIGTVSKLWGADTMETTRNVEK 306

Query: 638 VKKKITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALG 695
           V   + + +P    +              I      ++  S I  L+ +   F+W     
Sbjct: 307 VLASMAQNLPEDVELIPHVFRQASFIDASIDNLRDALLHSSIIVALVLLLFLFRWRPTAI 366

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLY 751
           ++  +   +   +     F I  N   +  ++  IG  V+D ++    +  R+R+N +  
Sbjct: 367 SLIAIPTSLMAGVLVLWAFDISINALTLGGLVFAIGEVVDDAIIDVENILRRLRENARAV 426

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVA 808
              +   D++ +   E     V+ ++   ++  P+       G +    AI     I  +
Sbjct: 427 AP-LPALDIVYEGSREIRNSVVFATLIILVAFTPIFFLQGIEGRIFQPMAIAYLAAIASS 485

Query: 809 ASSSIFIAAPILLFIYDWRAK 829
              +I +   +  ++     +
Sbjct: 486 LIVAITLVPVLSYYLMGREQR 506


>gi|113969132|ref|YP_732925.1| acriflavin resistance protein [Shewanella sp. MR-4]
 gi|113883816|gb|ABI37868.1| acriflavin resistance protein [Shewanella sp. MR-4]
          Length = 1067

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/674 (11%), Positives = 180/674 (26%), Gaps = 45/674 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+    +L   +   GL            +       P   ++L   L     +     
Sbjct: 13  RNSVAANLLMWALLIGGLFS---------TVLINKEVFPSFNLNL---LS--ITVAYPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   + +  +E    +           +    IT+   D    + + D+  L L  
Sbjct: 59  APQEIEEGINIKIEEAIQDINGIKKVTSVASEGVGAITVEVEDDYDVQTVLDEAKLRLDA 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S   V+ +K  +    E E +++      D  +    E +    +   D +    +  
Sbjct: 119 I-STFPVNIEKPQIFKI-EPENNVIWVSVYGDMSLHDMKELA----KSVRDDLTQLPAVT 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++  E    +LR+   T ++++      +    G           DG+  
Sbjct: 173 RAKVTGVRDYEIGIEVSEDKLREYGLTFSQVALAVQNSSIDLPGGSIRAE-----DGDIL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L       +G                    +        R        I       L+  
Sbjct: 228 LRTKGQAYTGDD--------------FANIVVTTRADGSRVMLPQVATIKDDFEERLEYT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +     +         RA                   G  ++
Sbjct: 274 RFNGKPAAIIEVTSVNDQNALDIAQQVKDYVEKRRATLPANAKLDTWGDLTHYLKGRLNM 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL--LGATLTLPSIAG 419
                   A LV ++L + +   K        + +  + T+ ++ L     T+ + ++  
Sbjct: 334 MMSNMFYGALLVFVILALFL-DLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFA 392

Query: 420 IVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +L +G+ VD  I++ E    E  R   S+   +      A    F    T      +L 
Sbjct: 393 FILVLGIVVDDAIVIGESAYSEVERHGHSIDNVIRGAQKVAMPATFGVLTTIAAFIPMLM 452

Query: 479 FFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   +  +   + + + +  S+  +  I+ A +  +   K  +        +      
Sbjct: 453 VSGPMGIIWKSIGMVVIMCLAFSLVESKFILPAHLAHMKFRKPGEPTGFFGRFKDRFNNR 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R +               +    L+  +   G ++     + P D   V+ 
Sbjct: 513 VQHFIHHSYRNFLERCIQHRYNVVAAFIGVLILSVALVVSGKVRWVFFPDIPSDFIQVQL 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       + +     +  L ++  +         V        +        + T+ 
Sbjct: 573 EMDEGSSEQNTLKVVQDIEEALYKMNAKMEKDNGSEVVKHSFINMSSRTSAFIFAELTKG 632

Query: 657 VGPKISRELIRKGI 670
              ++  E I    
Sbjct: 633 EDREVDGETIAAAW 646



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 88/252 (34%), Gaps = 10/252 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +   +   +               S    DG++   +              V E+ K  +
Sbjct: 779  IRTPQGKSVPFSTVAEVEKGESYASITRVDGKRAITIIANANKHKVEPSKVVNEIQKDFL 838

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             ++        T + G  +  +    G++ G   +   +   + +  K  ++   I   +
Sbjct: 839  PQLQAKYPKIQTTLDGGSLDEQNAMVGLMQGFFFALFTIYALMAVPLK-SYSQPLIIMSV 897

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +        F     G+  ++ ++  ++ L G  VND +++ D +    +     +S + 
Sbjct: 898  IPFGIIGALFGHLIQGLAMSVLSLCGIVALAGVVVNDSLILVDFVN---RAREQGLSIKQ 954

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                S        + TS+  F+ ++P+ +       ++   A  +AFGI+ +   ++ + 
Sbjct: 955  AAVDSGCYRFRAIILTSLTTFVGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILV 1014

Query: 817  APILLFIYDWRA 828
              + + + D + 
Sbjct: 1015 PLLYIILDDAKR 1026



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 91/280 (32%), Gaps = 8/280 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI      I L        G DF   +         V L  V +  +  +      +   
Sbjct: 218 SIRAEDGDILLRTKGQAYTGDDFANIVVTTRADGSRVMLPQVATIKDDFEERLEYTRFNG 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +        +++   + ++   +K    +P +   +T        +  +   +  
Sbjct: 278 KPAAIIEVTSVNDQNALDIAQQVKDYVEKRRATLPANAKLDTWGDLTHYLKGRLNMMMSN 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
           +   A+ + + + +      A   +  L +    T+    L  F +  N+  + A + ++
Sbjct: 338 MFYGALLVFVILALFLDLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFAFILVL 397

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ +     ++      S  ++I  +    +  +    +    + +PM +  
Sbjct: 398 GIVVDDAIVIGESAYSEVE--RHGHSIDNVIRGAQKVAMPATFG-VLTTIAAFIPMLMVS 454

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G +     S  + +   +  +   S FI    L  +   +
Sbjct: 455 GPMGIIWKSIGMVVIMCLAFSLVESKFILPAHLAHMKFRK 494


>gi|192290002|ref|YP_001990607.1| heavy metal efflux pump, CzcA family [Rhodopseudomonas palustris
           TIE-1]
 gi|192283751|gb|ACF00132.1| heavy metal efflux pump, CzcA family [Rhodopseudomonas palustris
           TIE-1]
          Length = 1052

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/585 (13%), Positives = 168/585 (28%), Gaps = 38/585 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           ++L        +   L   L    LD  P            D +   +          + 
Sbjct: 13  LLLVLFGTGFAVAAGLYALL-HLPLDAIPDLS---------DTQVVVYTEYPGQAPQVIE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +          + K  +         + + + F D         +V  FL G  S+L 
Sbjct: 63  DQVTYPLTTAMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDIYWARSRVLEFLNGAASRLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                ++    T        +  + +  ++                +  +E   +     
Sbjct: 123 AGVAPSIGPDATGVGWVYQYAVVSKELNLADTRSIQD---WNLRFALAKAEGVAEVASIG 179

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + Q     DP R+R    T A+M       N    G    +         +  ++D  
Sbjct: 180 GFVKQYNVVLDPQRMRDRGITMARMREAIRASNADVGGRTVELSEFEYVIRGKGYIKDIN 239

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           ++                      +     G     +        P        +     
Sbjct: 240 DLG-------------------NIVLKASGGTPVLLKDVARVELGPDERRGITELNGEGE 280

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I   +  ++    IE        + +        +           +    K T  
Sbjct: 281 VASGIVLQRFGVNALDVIEHVKKRFQEIASSLPKSVEIVPVYDRSTLIYSAIDTLKHTLL 340

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             + +V  V  + +L+ +  LVA   + + +++  A + LLG    + S+ GI + IG  
Sbjct: 341 EESLVVAAVCIVFLLHVRSALVAILMLPVGMLMAFAAMKLLGLGSNIMSLGGIAIAIGAM 400

Query: 428 VDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FG 481
           VD+ I++ E   +        +S    L    S     +F S +   ++ + +F      
Sbjct: 401 VDAAIVMIENAHKHLERAEPGKSRITILIEAASEVGPALFFSLLIITVSFLPIFTLESQE 460

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G      A T   ++  +   ++++V A+M+  +R K +             I   +   
Sbjct: 461 GRLFGPLAFTKTFAMAAAALLSVTLVPALMVIFVRGKIVPEHRNIINRALIWIYRPVIRT 520

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +RA+   + ++++    SI      G  +      G  L +   
Sbjct: 521 VLRAKTLVIVLALVVLGVSIWPARQLGTEFMPSLDEGTLLYMPTT 565



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 3/155 (1%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S +   + I        AL AI  L + +        L G+  N+ ++  +   IG  V+
Sbjct: 343 SLVVAAVCIVFLLHVRSALVAILMLPVGMLMAFAAMKLLGLGSNIMSLGGIAIAIGAMVD 402

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V+ +   K+++      S   ++ ++ +E      ++ +   +S LP+         
Sbjct: 403 AAIVMIENAHKHLERAEPGKSRITILIEAASEVGPALFFSLLIITVSFLPIFTLESQEGR 462

Query: 796 SF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            F   A    F +  AA  S+ +   +++     +
Sbjct: 463 LFGPLAFTKTFAMAAAALLSVTLVPALMVIFVRGK 497



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 85/264 (32%), Gaps = 18/264 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             + + A   V L  V +   +     I  +N        V ++ +            +  
Sbjct: 777  LVPLPAGGAVPLGEVATVQPARGPTSIRTENGQLATYIYVDIRDRDLGGYVADAKQAVQA 836

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                      T         + +  L  K +V + ++ I +L+Y+  R      L  + +
Sbjct: 837  GVSFPPGTYVTWSGQYEYLERATARL--KIVVPLTLAIIFLLLYLNFR-SLTETLIVMLS 893

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-----------DRMRKNM 748
            L   +   L      G   ++      + L G +    VV+             R     
Sbjct: 894  LPFALVGGLWLMWALGFNLSVAVAVGFIALAGVAAETGVVMLIYLDHALAAATARCVAED 953

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            +  T     ++ I +   E +   + T +A    +LP+      G  ++   A+PM  G+
Sbjct: 954  RRLTPR-DLQEAIMEGAVERVRPKMMTVVAIMAGLLPILWSSGTGSEIMQRIAVPMIGGM 1012

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            V +   ++ +   I   I  ++ K
Sbjct: 1013 VSSTLLTLIVIPAIYGLIEGFKLK 1036


>gi|242243937|ref|ZP_04798380.1| RND superfamily resistance-nodulation-cell division
           acriflavin:proton (H+) antiporter [Staphylococcus
           epidermidis W23144]
 gi|242232570|gb|EES34882.1| RND superfamily resistance-nodulation-cell division
           acriflavin:proton (H+) antiporter [Staphylococcus
           epidermidis W23144]
          Length = 1051

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/671 (8%), Positives = 173/671 (25%), Gaps = 39/671 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + + L  ++  +G + +      +  L+  P                     +     
Sbjct: 12  NKFAIFLMVVLIILGGVYSSA----KLKLELLPDVENPVI---------SVQTTMSGATP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 +    D     L              + +T+ + +    +   +++   +  + 
Sbjct: 59  QSTQDEISSKIDNQVRSLAYVNSVKTESIPNASIVTVEYDNGTDMDKAEEQLKKEIDKIK 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                   +  L   +     IV    + +       + + ++ +Q + ++   +     
Sbjct: 119 --FKDGVGEPELTRNSMDAFPIVAYSFSSNNQK--LKDVTNKLNQQLVPKLQTIDGVQNA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN---- 239
             + +   ++  +     L +   T   +  +           +F       S       
Sbjct: 175 QLNGQTNREVSLKFKQKNLDEKGLTANDVENYIKTATRETPLGLFQFNKSNKSIIVDGQF 234

Query: 240 -----------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                         +  +   +    +  +                 + G      +   
Sbjct: 235 KSVDAFKNLKIPLSISGQAGQNDSDSDNDSLMPTDNNRTSNSSTHMAQKGQMPSVPLKDL 294

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                          +                     +K     
Sbjct: 295 ADISVGDERTSISKTNGKDAVNLQIMKSQDANTVQVAREVQKKVDEFVRNESGMKSIK-T 353

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                    S        A+   + +IV+ + +   +   ++  SI +++++ L  L L 
Sbjct: 354 MDTAKPIEDSLYTMVEKAALGTIVAIIVILLFLRNIRTTAISIVSIPMSILIALIALKLS 413

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ---SVFCSLDMGFSRAYSTIFD 465
             +L + ++  + + IG  +D +I+V E I                +       +  I  
Sbjct: 414 NVSLNILTLGALTVAIGRVIDDSIVVVENIFRRLSDPNEKLKGENLIISATREVFKPIMS 473

Query: 466 SNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           S +  ++  + L F     G   R FA+ +  S+L S+  +I++V ++     +      
Sbjct: 474 STLVTIVVFLPLVFVSGSVGEMFRPFALAITFSLLASLLVSITLVPSLGATFFKNGVKNR 533

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                L              +  ++  + +SI   + S+ +   +     I       L 
Sbjct: 534 EQKGGLGVVGRAYRSALNWSLNHKWIVLIVSIFILVGSVVIGARNLGTSYISTGDNKFLA 593

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +        +       + ++ +   +    E          P D    T  + ++ K  
Sbjct: 594 LTYTPKPGETQKSITQHAEKVQNYLDKKDKVETVQYSIGGPTPQDPTGSTNSMAIMIKYQ 653

Query: 643 TEIVPLSTIQN 653
           ++        +
Sbjct: 654 SDTPNFDEEPD 664



 Score = 88.6 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 86/239 (35%), Gaps = 3/239 (1%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +++          +    +   L  ++ Q  ++V   R ++    +            T 
Sbjct: 295 ADISVGDERTSISKTNGKDAVNLQIMKSQDANTVQVAREVQKKVDEFVRNESGMKSIKTM 354

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                I   L        + + +A+++ +           +I ++ + I   L    L  
Sbjct: 355 DTAKPIEDSLYTMVEKAALGTIVAIIVILLFLRNIRTTAISIVSIPMSILIALIALKLSN 414

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +  N+  + A+   IG  ++D +VV + + + +      +   +LI  +  E     + +
Sbjct: 415 VSLNILTLGALTVAIGRVIDDSIVVVENIFRRLSDPNEKLKGENLIISATREVFKPIMSS 474

Query: 776 SMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   +  LP+  V G  G +   FA+ + F ++ +   SI +   +    +    KN 
Sbjct: 475 TLVTIVVFLPLVFVSGSVGEMFRPFALAITFSLLASLLVSITLVPSLGATFFKNGVKNR 533



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 97/267 (36%), Gaps = 6/267 (2%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
             N   D+       +  N+P   ++  S + SL+      +    + ++   +  +  D 
Sbjct: 784  QNKQTDWSSQKIKNIKLNKPTGGTIKLSEIASLKKSYTPSKLTQEDGDYATTVTGKVTDK 843

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                +  +++ K      P     N       I + + +  +  +    I  LI +    
Sbjct: 844  DVGGKSQQVMAKVKDLEKPSHIKINVGGATDDIDKAISQLAMAMIAAIIIVYLILVITFR 903

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + +L   +   +    + G   ++ ++  +L LIG  V + +V+ DR+   +
Sbjct: 904  GGLAPFTILFSLPFTVIGVVLALIITGETISVPSLIGMLMLIGIVVTNAIVLIDRV---I 960

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGI 805
                  +  +  + ++    +   + T++A   +++P+     S I      A  +  G+
Sbjct: 961  NNEKQGMQMKSALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGMAATVIGGL 1020

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + +   ++F+   +   ++  + K  +
Sbjct: 1021 ISSTLLTLFVVPVMYEILFTLKNKLTK 1047


>gi|262066613|ref|ZP_06026225.1| acriflavin resistance protein B [Fusobacterium periodonticum ATCC
           33693]
 gi|291379677|gb|EFE87195.1| acriflavin resistance protein B [Fusobacterium periodonticum ATCC
           33693]
          Length = 1020

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/618 (11%), Positives = 168/618 (27%), Gaps = 44/618 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++      IGLL            +  P+                        
Sbjct: 9   RRPVATTMVMLSFIFIGLLSMF-----SMKKELIPNIKIPVVT---------ITTTWSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +     +  S ++             + + ++F      +    ++   +  
Sbjct: 55  VSEDVEAQVTKKIKDSLSNVEAIDKIQTVSAYGVSNVVVNFDYGVDTDEKVTQIQREVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    L+        ++      I          +  I  Q   ++       
Sbjct: 115 IANSLPNDANTPLVRKVEAAGGNMTAV---IAFNADSKTALTTFIKEQLKPRLESLPGIG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         QL  + D  +L     +  ++         +                   
Sbjct: 172 QVDIFGNPDKQLQIQVDSDKLASYNLSPMELYNIVRTSVATYPIGKLS------------ 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G          +        +I     G          ++        +  
Sbjct: 220 --------TGNKDMIIRFMGELDYIDQYKNILISSDG-NTLRLKDVADVVLTTEDADNIG 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +    +          A      +R          +E         S S 
Sbjct: 271 YLNGKEAVVVLLQKSSDGDTITLNNAAFKAIEEMRPYMPAGTEYSIEMDASENINSSISN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      L  I+LF  +   +  ++   ++ + ++ T A LS+ G TL L S+ G+ 
Sbjct: 331 VSSSAIQGLILATIILFAFLKSFRTTVLISLALPVAIVFTFAFLSMRGTTLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSV-FCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +G+G+  D++++V + I     +  S    + +        ++  S +T ++  + + F 
Sbjct: 391 IGVGMLTDNSVVVVDNIYRHITELNSPVREAAENATEEVTFSVIASALTTIVVFLPILFI 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIP 535
            G      R  +  +  S L ++  AI+++  +    +  K MKS    +    + F + 
Sbjct: 451 PGLAREFFRDMSYAIIFSNLAAIIVAITMIPMLASRFLNRKSMKSEDGRLFKKVKAFYLK 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                   +A    + + + F    +   F          +G   L     +  DL+   
Sbjct: 511 VINKAISHKALTVLIMVGLFFFSIFVGPKFLKFEFMPKQDEGKYALTAELQKGTDLAKAE 570

Query: 596 SNLESLQIGDISFQNFDG 613
              + L+    +  +   
Sbjct: 571 KIAKELEEIVKNDPHTQS 588



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 59/155 (38%), Gaps = 3/155 (1%)

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +A +I       +   +     L + I  T  F ++ G   NL ++  +   +G   ++
Sbjct: 340 ILATIILFAFLKSFRTTVLISLALPVAIVFTFAFLSMRGTTLNLISLMGLSIGVGMLTDN 399

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
            VVV D +     +   +   R+  + +  E     + +++   +  LP+    G     
Sbjct: 400 SVVVVDNI--YRHITELNSPVREAAENATEEVTFSVIASALTTIVVFLPILFIPGLA-RE 456

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           F   M++ I+ +  ++I +A  ++  +        
Sbjct: 457 FFRDMSYAIIFSNLAAIIVAITMIPMLASRFLNRK 491



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 81/219 (36%), Gaps = 7/219 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                          V   ++   + ++  ++ P STI  +     +  ++ + +    + 
Sbjct: 787  NGIYTVTISGNDGGVGLGKIQSKIIEEFNKLEPPSTISYSWGGQTENMQKTMGQLSFALS 846

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            IS   +   +  +F+ +   +  I ++ L +   +    +     ++  +  V+ L G  
Sbjct: 847  ISIFLIYALLASQFESFIMPIIIIGSIPLALIGVIWGLVILRQPIDIMVMIGVILLAGVV 906

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +V+ D ++    + T        I  S    L   + T+M     ++PMA+    G
Sbjct: 907  VNNAIVLIDFIK---TMRTRGHDKEYSIIYSCETRLRPILMTTMTTVFGMIPMALGLGEG 963

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                   AI + FG+  +   ++ +   +   +  +  K
Sbjct: 964  SEFYKGMAITVIFGLSFSTILTLVLIPILYSVVDSFTVK 1002


>gi|212635778|ref|YP_002312303.1| cation/multidrug efflux pump [Shewanella piezotolerans WP3]
 gi|212557262|gb|ACJ29716.1| Cation/multidrug efflux pump [Shewanella piezotolerans WP3]
          Length = 1020

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 69/629 (10%), Positives = 167/629 (26%), Gaps = 43/629 (6%)

Query: 50  LRGGSHLVLEVDEDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADS 105
           L  G  + +           V G++        +                + IT++    
Sbjct: 40  LETGV-ITITTQYPGASASSVQGYVTQPLQAQIAQTAGIDYMTSESSLGTSLITVNLKLD 98

Query: 106 RFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME 165
              +    ++   +Q V  +L        ++ +T +   + LS ++         + S  
Sbjct: 99  YPSDKALTEILSLVQQVKYRLPAGVLDPSILKSTSQSPILYLSFSSDTLSTE---QISDY 155

Query: 166 IIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKG 225
           I R     I       +     +    +    +P+++       A +       N     
Sbjct: 156 ISRVVKPTISTVSGVSKIDLLGQRDFAMRIWLNPTKMAAFGIVAADVQNAIKGNNAVSAA 215

Query: 226 FMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV 285
                +++                         A+ D  + +    I+      R     
Sbjct: 216 GKIKDKYIE--------------------VDINAHTDAASVEAFKQIALKASDGRIIHMQ 255

Query: 286 TRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN 345
               +              +        S  +  +          +   +          
Sbjct: 256 DIATVELGANSYDALVNFNSKPAVLTAISNTSNSNPLNVAADVYKVLPGIIDSLPEGIDA 315

Query: 346 IVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALL 405
            V   +      S      T    A +V+IV+F  +   +  ++   +I L++I  +  +
Sbjct: 316 NVTYDSTKYIQTSIDEVAKTLIEAAIIVIIVIFAFLGSMRAMMLPLVTIPLSLIGAMFFM 375

Query: 406 SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             +G ++ + ++  +VL I L VD  I+V E              +  +        +  
Sbjct: 376 LAMGFSINILTLLAMVLAISLVVDDAIVVVENTFRHLEDGVDPVNAAIISAREIAGPVVA 435

Query: 466 SNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY----- 517
             IT       + F G   G     FA T+  ++LIS F A+++   M   ++       
Sbjct: 436 MTITLAAVYAPIGFMGGLTGKLFTEFAFTLVGAVLISGFLALTLTPMMCSKVLNKSTLEG 495

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
           K +K ID +           + +     +      + +          T       + +G
Sbjct: 496 KLVKKIDASIAVITRHYTHMLTLLLENRKLVWPFAATILVALIFMFTHTASELAPQEDQG 555

Query: 578 GIQLGVLANRPVDLSVVR-------SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
            + +        +   +          + +    D+       + +          D   
Sbjct: 556 VMIMMGKGPTTANTDYLNHFTQPLTKIVNAYPEKDMDMMVNGYQNDQTFFGLAVLKDWSE 615

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +    + + K+    +            P
Sbjct: 616 RDASSKEIMKRFQSDISTLPGLQVYTFSP 644



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 81/241 (33%), Gaps = 10/241 (4%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
              +     L SL     S Q    ++   +         +    + E           + 
Sbjct: 767  SANGQMVPLASLVTITKSVQPSAVDQFQQLNSAMIEAKMMPGVSIGEAYSVMAEAAEQIL 826

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITK 706
                +     ++ + L     +        ++IY+ +      +   L  +T++ L I  
Sbjct: 827  PKAYSTDASGQLRQFLEEGSSLIATFFLAIIIIYLVLAAQFESFRDPLIVLTSVPLSIFG 886

Query: 707  TLGFFALFGIE-FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             +     FGI+  N+     ++TLIG      +++ +    N        S R+   K+ 
Sbjct: 887  AM-LPLYFGIDTLNIYTEVGLVTLIGLISKHGILIVE--FANQLQAEKGYSKREAAIKAA 943

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T+ A  I V+P+ +    G     +  + +  G+ +    ++F+   +  F
Sbjct: 944  AVRLRPVLMTTAAMVIGVVPLLIAVGAGAQSRFAIGLVITVGMSIGTMFTLFVLPTVYTF 1003

Query: 823  I 823
            +
Sbjct: 1004 L 1004



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 51/148 (34%), Gaps = 6/148 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +  + T+ L +   + F    G   N+  + A++  I   V+D +VV +      
Sbjct: 353 SMRAMMLPLVTIPLSLIGAMFFMLAMGFSINILTLLAMVLAISLVVDDAIVVVEN---TF 409

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGI 805
           +     +   +    S  E  G  V  ++       P+   GG        FA  +   +
Sbjct: 410 RHLEDGVDPVNAAIISAREIAGPVVAMTITLAAVYAPIGFMGGLTGKLFTEFAFTLVGAV 469

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833
           +++   ++ +   +   + +      ++
Sbjct: 470 LISGFLALTLTPMMCSKVLNKSTLEGKL 497


>gi|146291989|ref|YP_001182413.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
 gi|145563679|gb|ABP74614.1| acriflavin resistance protein [Shewanella putrefaciens CN-32]
          Length = 1063

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/674 (10%), Positives = 177/674 (26%), Gaps = 45/674 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+    +L   +   GL            +       P   ++L   L     +     
Sbjct: 13  RNSVAANLLMWALLIGGLFS---------TVLINKEVFPSFNLNL---LS--ISVAYPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   + +  +E    +           +    IT+   D    +N+ D+  L L  
Sbjct: 59  APQEIEEGINIKIEEAIQDINGIKKVTSVASEGVGSITIEVEDGYDVQNVLDEAKLRLDA 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S   V+ +K  +      E +++      D  +    E +    +   D +    +  
Sbjct: 119 I-STFPVNIEKPNIYQIK-PENNVIWVSVYGDMTLHDMKELA----KSVRDDLTQLPAVT 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++  E    +LR+   T ++++      +    G           DG+  
Sbjct: 173 RAKVTGVRDYEISIEVSEDKLREYGLTFSQVALAVQNSSIDLPGGSIRAE-----DGDIL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L       +G                    +        R        I       L+  
Sbjct: 228 LRTKGQAYTGDD--------------FANIVLTTRADGSRVMLPQVATIKDDFEERLEYT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +               RA                   G  ++
Sbjct: 274 RFNGKPAAIIEVISIDDQNALDIAAQVKQYVENRRATLPANAQLDTWGDMTHYLQGRLNM 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL--LGATLTLPSIAG 419
                   A LV ++L + +   K        + +  + T+ ++ L     T+ + ++  
Sbjct: 334 MMSNMFYGALLVFLILALFL-DLKLAFWVMVGLPVCFLGTMLIMPLEPFSMTINMLTLFA 392

Query: 420 IVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +L +G+ VD  I++ E    E  R   S+   +      A    F    T      +L 
Sbjct: 393 FILVLGIVVDDAIVIGESAYSEVERHGHSIDHVIRGAQKVAMPATFGVLTTIAAFIPMLL 452

Query: 479 FFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   +  +   + + + +  S+  +  I+ A +  +   K  +        +      
Sbjct: 453 VSGPMGIIWKSIGMVVIMCLAFSLVESKFILPAHLAHMKFKKPGEPRGAFGRFKAKFNNG 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R +               +    L+  +   G ++     + P D   V+ 
Sbjct: 513 VQHFIHHHYRHFLEFCIKHRYNVVAAFIGVLILSIALVASGKVRWVFFPDIPSDFIQVQL 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       + +     +  L ++  +         V        +        + T+ 
Sbjct: 573 EMDEGSSEPNTLKVVQSIEEALYQMNAKMEKENGYQVVKHSFINMSSRTSAFIFAELTKG 632

Query: 657 VGPKISRELIRKGI 670
              ++    I    
Sbjct: 633 EDREVDGVTIAAAW 646



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 90/256 (35%), Gaps = 10/256 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +   +   +               S    DG++   +              V E+ K  +
Sbjct: 779  IRTPQGASVPFSTVAQIEKGDSYASITRVDGKRAITITANANKNKVEPSKVVQEIQKDYL 838

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             ++        T + G  +  +    G++ G   +   +   + +  K  ++   I   +
Sbjct: 839  PQLQAKYPKIQTALDGGSLDEQNAMVGLIQGFFFALFTIYALMAVPLK-SYSQPLIIMSV 897

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +        F     G+  ++ ++  ++ L G  VND +++ D +    +     +S R 
Sbjct: 898  IPFGIIGALFGHLVQGLAMSVLSLCGIVALAGVVVNDSLILVDFVN---RAREQGLSVRQ 954

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                S        + TS+  F+ ++P+ +       ++   A  +AFGI+ +   ++ + 
Sbjct: 955  AAIDSGCYRFRAIILTSLTTFVGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILV 1014

Query: 817  APILLFIYDWRAKNAR 832
              + + + D +   +R
Sbjct: 1015 PLLYIILDDAKRTGSR 1030



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 89/280 (31%), Gaps = 8/280 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI      I L        G DF   +         V L  V +  +  +      +   
Sbjct: 218 SIRAEDGDILLRTKGQAYTGDDFANIVLTTRADGSRVMLPQVATIKDDFEERLEYTRFNG 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +  +     +++     ++   +     +P +   +T        +  +   +  
Sbjct: 278 KPAAIIEVISIDDQNALDIAAQVKQYVENRRATLPANAQLDTWGDMTHYLQGRLNMMMSN 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
           +   A+ + + + +      A   +  L +    T+    L  F +  N+  + A + ++
Sbjct: 338 MFYGALLVFLILALFLDLKLAFWVMVGLPVCFLGTMLIMPLEPFSMTINMLTLFAFILVL 397

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ +     ++      S   +I  +    +  +    +    + +PM +  
Sbjct: 398 GIVVDDAIVIGESAYSEVE--RHGHSIDHVIRGAQKVAMPATFG-VLTTIAAFIPMLLVS 454

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G +     S  + +   +  +   S FI    L  +   +
Sbjct: 455 GPMGIIWKSIGMVVIMCLAFSLVESKFILPAHLAHMKFKK 494


>gi|302561048|ref|ZP_07313390.1| AcrB/AcrD/AcrF family transporter [Streptomyces griseoflavus
           Tu4000]
 gi|302478666|gb|EFL41759.1| AcrB/AcrD/AcrF family transporter [Streptomyces griseoflavus
           Tu4000]
          Length = 1048

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/518 (12%), Positives = 157/518 (30%), Gaps = 39/518 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LE 59
           R +     L  ++  I L+      +PQ      P+                  ++   +
Sbjct: 16  RFSLAQRALIGLMSIIALVFGA-IAIPQLKQQLLPTIELPM-----------VSVIAPYQ 63

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               D V   +    ++    +        +  +    I  SF      + +   V   +
Sbjct: 64  GASPDVVEKQVVEPVEDSLGAVDGISGVTSTASEGNAVIMASFDYGNNTQQLVADVQQAV 123

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L       ++  +T+   ++VL+  +           +  + R  +  +   + 
Sbjct: 124 NRAGARLPDGVDPQVVAGSTDDIPTVVLAVTSGTDQQ----ALADRLDRTVVPALEGIDG 179

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q        +Q+    D ++L +   T   ++        +     F      D DG 
Sbjct: 180 VGQVTVDGVRDVQVTVTPDDAKLAKAGLTAQSLAAALQAGGATVPAGSF------DEDGA 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+    ++                   + ++ +    +         + +  A    
Sbjct: 234 NRTVQVGGGLT------------SLKQIEDLMVTGEPGKGKPVRLADVATVKEEEAGSDS 281

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                       + +     S     E        LR          V      A   + 
Sbjct: 282 LTRTNGRPSLAVMATMDHDGSAVAISEAVEDKLPELREDLGDGATLTVVSDQGPAVSKAI 341

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                  A+     ++V+ + +   +  LV   SI L+V+L L +L     +L + ++  
Sbjct: 342 DGLTTEGALGLIFAVLVILVFLASVRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGA 401

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + + IG  VD +I+V E I+      +    ++          +  S +T +   + +  
Sbjct: 402 LTIAIGRVVDDSIVVLENIKRHLGYGEERHAAIMNAVREVAGAVTSSTLTTVAVFLPIGL 461

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            GG        F++T+  ++L S+  ++++V  +  + 
Sbjct: 462 VGGMVGELFGSFSLTVTAALLASLLVSLTVVPVLSYWF 499



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 69/184 (37%), Gaps = 16/184 (8%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    L  +++ + +   L+ + +      K    L  +G +G+I + + +L+++   
Sbjct: 307 SEAVEDKLPELREDLGDGATLTVVSDQGPAVSKAIDGLTTEGALGLIFAVLVILVFLA-- 364

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    ++ L +   L       +  N+  + A+   IG  V+D +VV + ++  
Sbjct: 365 -SVRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK-- 421

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +           I  ++ E  G    +++      LP+ + GG            G + 
Sbjct: 422 -RHLGYGEERHAAIMNAVREVAGAVTSSTLTTVAVFLPIGLVGG----------MVGELF 470

Query: 808 AASS 811
            + S
Sbjct: 471 GSFS 474



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 66/195 (33%), Gaps = 8/195 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                              V   ++ KI  +   +          +   +      + ++
Sbjct: 806 DGQRAATVTAKPSGDNTGAVSADLQSKIDALTLPAGATAEIGGVSQDQDDAFANLGLAML 865

Query: 675 ISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +   F+     L  + ++    T  +G   + G    + A+  +L LIG  
Sbjct: 866 AAIAIVFMLLVGTFRSLAQPLILLVSIPFAATGAIGLLLVTGTPMGVPAMIGMLMLIGIV 925

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
           V + +V+ D + +            + + +     L   + T++A   ++LPMA+     
Sbjct: 926 VTNAIVLIDLINQYRAQ---GYGVVEAVLEGGRHRLRPILMTALATIFALLPMALGVTGE 982

Query: 790 GGSVIGSFAIPMAFG 804
           GG +    A+ +  G
Sbjct: 983 GGFIAQPLAVVVIGG 997


>gi|292491818|ref|YP_003527257.1| heavy metal efflux pump, CzcA family [Nitrosococcus halophilus Nc4]
 gi|291580413|gb|ADE14870.1| heavy metal efflux pump, CzcA family [Nitrosococcus halophilus Nc4]
          Length = 1035

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 76/596 (12%), Positives = 164/596 (27%), Gaps = 46/596 (7%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVNGFLQMYSDELRSFLKKEGI 86
           +  +D FP                   +V E      + V   +    +   +       
Sbjct: 33  RMPVDVFPDLTAPR-----------VTVVAEAHGMAPEEVETLITFPLETAFNGASGVRR 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
              S       IT+ F            V   LQ V   L       +L   T     I+
Sbjct: 82  VRSSSGVGIAVITIEFNWGMDIYRARQIVAEKLQLVRGALPPQIPPPVLAPVTSIMGEIM 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                 D     A+E   +       ++       Q +       Q      P RL    
Sbjct: 142 FVALTSD--RHSALELKTKADWVLRRRLLAVPGVAQVIPIGGDTKQYQVIIQPERLAAYD 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
               ++       N +     +                      G            +  
Sbjct: 200 IAVDQVVEALRKTNQNISAGFY-------------------VQGGQEYLIHGIGRVQRLE 240

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +               +    P      G       +   I       +   T  
Sbjct: 241 DIRETLIAQRGDQPVLVRHVAEVALGPAPKRGTGAHNGEAAVIIGIQKQPDTNTLALTAR 300

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
              +LA +  A    + L     R       +           A LV++++F  ++  + 
Sbjct: 301 LDEVLAEIQTALPPGMILKTHIFRQADFITVAIENLLEALRDGAILVVVIVFAFLMSLRA 360

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI-------- 438
            ++   +I L+++  +  +  LGA     ++ G+ + +G  VD  I+V E I        
Sbjct: 361 SVITLLAIPLSLVTAILAMKALGANFNTMTLGGMAIALGALVDDAIIVVENIVRRLRENQ 420

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLS 495
           + E  + +S    +         +I  + +  ++  + LFF     G  ++   +   +S
Sbjct: 421 QREKEQRRSPGRVVLAATREIQGSIVFATLIIILVFLPLFFLSGVEGRLMQPLGLAYIIS 480

Query: 496 ILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISI 554
           +  S+  AI++   + ++ + R + + +     L           +     R+  + +  
Sbjct: 481 LAASLLVAITVTPVLSLLLLPRARIVHTYRETRLVGSLKRHYERFLAATVTRWKTIALMA 540

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQN 610
           L ++ +    F       +       L + A      S+ +S+    ++  I  Q 
Sbjct: 541 LIALAATLGAFAGVGQSFLPPFNEGSLTISAVTLPGTSLAQSDRLGQRVEKILLQY 596



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 29/241 (12%), Positives = 78/241 (32%), Gaps = 9/241 (3%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L           N +      ++ Q          R+ E++ +  T + P   ++    
Sbjct: 264 ALGPAPKRGTGAHNGEAAVIIGIQKQPDTNTLALTARLDEVLAEIQTALPPGMILKTHIF 323

Query: 657 VGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                    I   +  +   + + ++I          ++  +  + L +   +      G
Sbjct: 324 RQADFITVAIENLLEALRDGAILVVVIVFAFLMSLRASVITLLAIPLSLVTAILAMKALG 383

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKN-MKLYTTSISFRDLIDKSINETLG 770
             FN   +  +   +G  V+D ++V +    R+R+N  +      S   ++  +  E  G
Sbjct: 384 ANFNTMTLGGMAIALGALVDDAIIVVENIVRRLRENQQREKEQRRSPGRVVLAATREIQG 443

Query: 771 RSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V+ ++   +  LP+    G    ++    +     +  +   +I +   + L +    
Sbjct: 444 SIVFATLIIILVFLPLFFLSGVEGRLMQPLGLAYIISLAASLLVAITVTPVLSLLLLPRA 503

Query: 828 A 828
            
Sbjct: 504 R 504



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/188 (14%), Positives = 71/188 (37%), Gaps = 9/188 (4%)

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISA-IAMLIYIWIRFKWYFALGAI-TTLILDI 704
            P                      I+GV++   I +L+++         L  +   L L +
Sbjct: 844  PAGYHIEYGGQFESAEAASRTLSILGVLVVFGIFLLLFMAFNSARDAGLVMVNLPLAL-M 902

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
               +G + L G   ++ ++   +TL G +  + V++   +   ++           + + 
Sbjct: 903  GGVIGVY-LSGGILSVASLIGFITLFGIATRNGVMMIAHIHHLVEKEGVREPLT-AVIRG 960

Query: 765  INETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              E L   + T++   ++++P+A+     G  +    A+ + FG++ +   ++ +   + 
Sbjct: 961  ARERLIPILMTALGTALALIPLALSAGEPGSEIQAPMAMVILFGLLTSTMLNMVVVPALY 1020

Query: 821  LFIYDWRA 828
            L     R 
Sbjct: 1021 LRFGAVRQ 1028


>gi|146291260|ref|YP_001181684.1| CzcA family heavy metal efflux protein [Shewanella putrefaciens
           CN-32]
 gi|145562950|gb|ABP73885.1| heavy metal efflux pump, CzcA family [Shewanella putrefaciens
           CN-32]
          Length = 1049

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/598 (12%), Positives = 169/598 (28%), Gaps = 45/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++I+  MI   G+       L ++ LD  P       I                 
Sbjct: 11  RQRLMVLIIAIMITVWGV-----QELRKTPLDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APKLVEEQVTYPLSTAMLAVPGAKTVRGFSMFGDSYVYVIFEDGTDIYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++S+L    + +L    +                     +           ++       
Sbjct: 117 ISSRLPQGVQPSLGPDASGVGWVYEY-ALVDRSGSLDLSQLKSLQDWYLKLELQSVAGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +        +P ++       A +       N+   G +  +         + 
Sbjct: 176 EVATVGGMEQTYQIVLEPDKMAIYKLDIASIKDAIEKSNSEAGGSVIEMAEAEYMVRAKG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +   I L   + +      K V  +       R   E+  +             
Sbjct: 236 YRQTLEDFREIPLGITSPSGTGLLLKDVATVRKGPASRRGIAELDGE------------- 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +   TI+        L+AG       I         L S   
Sbjct: 283 ----GEVVGGIIVMRYGENALSTIDAVKAKLEELKAGLPDGVEIIPTYDRSQLILKSVDN 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI 
Sbjct: 339 LFSKVVEEMLVVGLVCLLFLLHARSTLVAIITLPLSILIAFIVMNKMGVNANIMSLGGIA 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDSNITAL 471
           + IG  VD  I++ E + +   +  +           +  +          +F S I   
Sbjct: 399 IAIGAVVDGAIVMIENLHKHLEQFHTEHNREPDTKEHWRIVTEASIEVGPALFFSLIIIT 458

Query: 472 IATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ V +F      G      A T   ++  S   AI++V  +M + IR K          
Sbjct: 459 LSFVPVFALEAQEGRLFAPLAYTKSFAMAASALLAITLVPVLMGYFIRGKIPSEHKNPIS 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                +        +R     + ++++  + +   +   G  +  + + G  L +   
Sbjct: 519 RVLIALYKPSLNLVLRFPKITLALALIALVSAWYPMTRMGSEFMPELEEGDLLYMPTA 576



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 82/233 (35%), Gaps = 13/233 (5%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-- 667
                E   L+   +   +  +    +   K+ +T  + +    +    G     + +   
Sbjct: 812  MLTSENGRLISWVFIDIEGTSIGEYITTAKQALTAELKVPPRYSYTFAGQYEYMQRVDAK 871

Query: 668  -KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             K ++ + +  I +L+ +        ++  + +L   +  +     L     ++     +
Sbjct: 872  LKQVIPMALGVIFILLMMTFGSTLQASII-MLSLPFALVGSTWLLYLLDYNISVAVAVGM 930

Query: 727  LTLIGYSVNDKVVVY------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            + L G +    V++        + R++   Y T    ++ + +     +     T    F
Sbjct: 931  IALAGVAAEFGVIMLIYLNNAIKHRQDKNNYHTVTDLKEALIEGAVMRIRPKAMTVATIF 990

Query: 781  ISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +LP+      G  V+   A PM  G+V A   S+F+   + L IY  + K 
Sbjct: 991  FGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLIYSRQLKK 1043



 Score = 48.5 bits (113), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 86/227 (37%), Gaps = 13/227 (5%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +  K    L  K +  
Sbjct: 287 GGIIVMRYGENALSTIDAVKAKLEELKAGLPDGVEIIPTYDRSQLILKSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L AI TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAIITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNMK----LYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K+++     +      ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEQFHTEHNREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           P+          FA P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 463 PVFALEAQEGRLFA-PLAYTKSFAMAASALLAITLVPVLMGYFIRGK 508


>gi|110637908|ref|YP_678115.1| heavy metal efflux pump protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110280589|gb|ABG58775.1| heavy metal efflux pump protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 1049

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/595 (12%), Positives = 154/595 (25%), Gaps = 40/595 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
              +   +G+       + ++ +D  P       I                     +   
Sbjct: 14  FIVLFIAVGVFAWGILSITKNPIDAIPDLSENQVI---------VFTEWMGRSPQVIEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          + K      +     + + + F D         +V   L      L   
Sbjct: 65  ITYPLVSNLQGIPKIKNVRGTSMFGMSFVYIIFEDDVDIYWARTRVLERLNYAQRLLPQG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               L    T            +D       EQ           +   +   +       
Sbjct: 125 ITPTLGPDGTGVGHVFWY---YLDAKNIDLGEQRALQDWYIKFGLQTVKGVSEVASFGGF 181

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q     DP++L     T   +     + NN   G  F +  +         ++   ++
Sbjct: 182 QKQYQINIDPNKLTYYNLTLMDVLKAVKVNNNDVGGRKFEMSDMSYIVRGLGYIKKIEDV 241

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             + ++              V +  D            + +G                  
Sbjct: 242 ENVPVSTNNTIPIRIKDIATVQMGGDIRLGIFDNNGEGEVVGG----------------- 284

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   +   + +  I+        +  G        V          + S  K T    
Sbjct: 285 --IVVMRYGENADNVIKDVKAKLKDIEKGLPEGVTIKVAYDRSTLIEEAISSIKHTLGEE 342

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
              V +V+ + +L  K        I + +  +  LL++ G +  + S+ GI L IG+ VD
Sbjct: 343 IITVSLVVIIFLLSWKSAFSIIIQIPITIAASFILLNMFGISSNIMSLTGIALAIGVIVD 402

Query: 430 SNILVNERIREE----NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           + I++ E             Q     ++    +    IF S I  + + + +F      G
Sbjct: 403 NGIVMAENCHRNLSLKVYDEQDRLNIIEKSCKQVGRGIFFSTIIIIASFLPVFMLSGQEG 462

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC--IAI 540
                 A T    +L+    A+++   ++ F ++ K               I        
Sbjct: 463 KLFHPLAWTKTFILLVDAILAVTLAPVLISFFMKGKLRPESSNPINRWLEKIYTPIITWC 522

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
              R    G+ I  L     + +         +D    + + V      +  V R
Sbjct: 523 LTWRKTTLGINILALLISIPLLMSLGKEFMPPLDEGSILFMPVTLPDVSNSEVKR 577



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 93/278 (33%), Gaps = 8/278 (2%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
            +  +  +        +       + +       + +       +   +   +   G   
Sbjct: 228 IVRGLGYIKKIEDVENVPVSTNNTIPIRIKDIATVQMGGDIRLGIFDNNGEGEVVGGIVV 287

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                         + ++ ++ K     +        + ++   IS      G   + +S
Sbjct: 288 MRYGENADNVIKDVKAKLKDIEKGLPEGVTIKVAYDRSTLIEEAISSIKHTLGEEIITVS 347

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + ++        W  A   I  + + I  +     +FGI  N+ ++  +   IG  V++
Sbjct: 348 LVVII----FLLSWKSAFSIIIQIPITIAASFILLNMFGISSNIMSLTGIALAIGVIVDN 403

Query: 737 KVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
            +V+ +   +N+ L         ++I+KS  +      ++++    S LP+ +  G    
Sbjct: 404 GIVMAENCHRNLSLKVYDEQDRLNIIEKSCKQVGRGIFFSTIIIIASFLPVFMLSGQEGK 463

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +    A    F ++V A  ++ +A  ++ F    + + 
Sbjct: 464 LFHPLAWTKTFILLVDAILAVTLAPVLISFFMKGKLRP 501



 Score = 40.1 bits (91), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 59/162 (36%), Gaps = 14/162 (8%)

Query: 682  IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
            +Y+        A  ++ T+   +         + +  ++  +   + L G +V   +++ 
Sbjct: 878  LYLAF-HSLREAFLSLLTIPFALIGGAYMIYFYQVNLSVAVMVGFIALFGIAVETGIIMV 936

Query: 742  ----DRM------RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
                D M      +K +    T+   R+ +     + L   + T   A   ++P+     
Sbjct: 937  IYLNDAMHQLVLKKKELNESITNEDIREYVINGAAKRLRPKLMTVSVALFGLVPVLWSSG 996

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G  V+    +PM  G++ +++  + +   I     ++  + 
Sbjct: 997  VGSDVMLPIVLPMIGGVLTSSTHILLVTPLIFEMTKEYELRK 1038


>gi|120600082|ref|YP_964656.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
 gi|120560175|gb|ABM26102.1| acriflavin resistance protein [Shewanella sp. W3-18-1]
 gi|319425284|gb|ADV53358.1| acriflavin resistance protein [Shewanella putrefaciens 200]
          Length = 1063

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/674 (10%), Positives = 177/674 (26%), Gaps = 45/674 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+    +L   +   GL            +       P   ++L   L     +     
Sbjct: 13  RNSVAANLLMWALLIGGLFS---------TVLINKEVFPSFNLNL---LS--ISVAYPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   + +  +E    +           +    IT+   D    +N+ D+  L L  
Sbjct: 59  APQEIEEGINIKIEEAIQDINGIKKVTSVASEGVGSITIEVEDGYDVQNVLDEAKLRLDA 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S   V+ +K  +      E +++      D  +    E +    +   D +    +  
Sbjct: 119 I-STFPVNIEKPNIYQIK-PENNVIWVSVYGDMTLHDMKELA----KSVRDDLTQLPAVT 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++  E    +LR+   T ++++      +    G           DG+  
Sbjct: 173 RAKVTGVRDYEISIEVSEDKLREYGLTFSQVALAVQNSSIDLPGGSIRAE-----DGDIL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L       +G                    +        R        I       L+  
Sbjct: 228 LRTKGQAYTGDD--------------FANIVLTTRADGSRVMLPQVATIKDDFEERLEYT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +               RA                   G  ++
Sbjct: 274 RFNGKPAAIIEVISIDDQNALDIAAQVKQYVENRRATLPANAQLDTWGDMTHYLQGRLNM 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL--LGATLTLPSIAG 419
                   A LV ++L + +   K        + +  + T+ ++ L     T+ + ++  
Sbjct: 334 MMSNMFYGALLVFLILALFL-DLKLAFWVMVGLPVCFLGTMLIMPLEPFSMTINMLTLFA 392

Query: 420 IVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +L +G+ VD  I++ E    E  R   S+   +      A    F    T      +L 
Sbjct: 393 FILVLGIVVDDAIVIGESAYSEVERHGHSIDHVIRGAQKVAMPATFGVLTTIAAFIPMLL 452

Query: 479 FFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   +  +   + + + +  S+  +  I+ A +  +   K  +        +      
Sbjct: 453 VSGPMGIIWKSIGMVVIMCLAFSLVESKFILPAHLAHMKFKKPGEPRGAFGRFKAKFNNG 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R +               +    L+  +   G ++     + P D   V+ 
Sbjct: 513 VQHFIHHHYRHFLEFCIKHRYNVVAAFIGVLILSIALVASGKVRWVFFPDIPSDFIQVQL 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++       + +     +  L ++  +         V        +        + T+ 
Sbjct: 573 EMDEGSSEQNTLKVVQSIEEALYQMNAKMEKENGYQVVKHSFINMSSRTSAFIFAELTKG 632

Query: 657 VGPKISRELIRKGI 670
              ++    I    
Sbjct: 633 EDREVDGVTIAAAW 646



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 90/256 (35%), Gaps = 10/256 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +   +   +               S    DG++   +              V E+ K  +
Sbjct: 779  IRTPQGASVPFSTVAQIEKGDSYASITRVDGKRAITITANANKNKVEPSKVVQEIQKDYL 838

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             ++        T + G  +  +    G++ G   +   +   + +  K  ++   I   +
Sbjct: 839  PQLQAKYPKIQTALDGGSLDEQNAMVGLIQGFFFALFTIYALMAVPLK-SYSQPLIIMSV 897

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +        F     G+  ++ ++  ++ L G  VND +++ D +    +     +S R 
Sbjct: 898  IPFGIIGALFGHLVQGLAMSVLSLCGIVALAGVVVNDSLILVDFVN---RAREQGLSVRQ 954

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                S        + TS+  F+ ++P+ +       ++   A  +AFGI+ +   ++ + 
Sbjct: 955  AAIDSGCYRFRAIILTSLTTFVGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILV 1014

Query: 817  APILLFIYDWRAKNAR 832
              + + + D +   +R
Sbjct: 1015 PLLYIILDDAKRTGSR 1030



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 89/280 (31%), Gaps = 8/280 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI      I L        G DF   +         V L  V +  +  +      +   
Sbjct: 218 SIRAEDGDILLRTKGQAYTGDDFANIVLTTRADGSRVMLPQVATIKDDFEERLEYTRFNG 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +  +     +++     ++   +     +P +   +T        +  +   +  
Sbjct: 278 KPAAIIEVISIDDQNALDIAAQVKQYVENRRATLPANAQLDTWGDMTHYLQGRLNMMMSN 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
           +   A+ + + + +      A   +  L +    T+    L  F +  N+  + A + ++
Sbjct: 338 MFYGALLVFLILALFLDLKLAFWVMVGLPVCFLGTMLIMPLEPFSMTINMLTLFAFILVL 397

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ +     ++      S   +I  +    +  +    +    + +PM +  
Sbjct: 398 GIVVDDAIVIGESAYSEVE--RHGHSIDHVIRGAQKVAMPATFG-VLTTIAAFIPMLLVS 454

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G +     S  + +   +  +   S FI    L  +   +
Sbjct: 455 GPMGIIWKSIGMVVIMCLAFSLVESKFILPAHLAHMKFKK 494


>gi|239635999|ref|ZP_04677016.1| AcrB/AcrD/AcrF family protein [Staphylococcus warneri L37603]
 gi|239598464|gb|EEQ80944.1| AcrB/AcrD/AcrF family protein [Staphylococcus warneri L37603]
          Length = 1054

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 66/684 (9%), Positives = 177/684 (25%), Gaps = 41/684 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + + L  ++  +G + A      +  L+  P                     +     
Sbjct: 12  NKFAIFLMVLLVILGGVYASA----KLKLELLPDVENPMI---------SVQTTMPGATP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 +    D     +           Q  + +T+ + +    +   +++   +  + 
Sbjct: 59  QTTQDEISSKIDSQVRSMAYVKSVKTESIQNASIVTVEYNNDTDMDKAEEQLKKEIDKIK 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                      L   +     I+          +     + ++ +Q I ++   +     
Sbjct: 119 --FKDGVSDPELTRNSMDAFPIIAYSLTDKD--NDLKSVTKKLNQQLIPKLQTIDGVQNA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------- 236
             + +   ++  +     L     T   +  +           +F       S       
Sbjct: 175 QLNGQTNREVTLKFKQKELDSKGVTADDVENYLKTATRETPLGLFQFGDTDKSIVVDGQF 234

Query: 237 ----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                            + +   SG   N  + +  P               +   F++ 
Sbjct: 235 TSVNAFKNLKIPATIAGQGQSSDSGSDDNQDSESLMPSEPSSASSSKQGSSSSMPSFKLK 294

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                                      +     +     +            +  +K   
Sbjct: 295 DVADISVGDERTSISKTNGKDAVNLQITKAQDANTVQVAKDVQKKVDEFEKNNSEMKAIK 354

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
                      S        A+   + ++V+ + +   +   ++  SI +++++ L  L 
Sbjct: 355 -TMDTAKPIEDSLYTMIEKAALGTIVAIVVILLFLRNIRTTAISIVSIPMSILIALVALK 413

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTI 463
           L   +L + ++  + + IG  +D +I+V E I                +    +  +  I
Sbjct: 414 LSNVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLSDRNEQLKGDSLIVSATTEVFKPI 473

Query: 464 FDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             S +  +I  + L F     G   R FA+ +  S+L S+  +I++V A+   + R    
Sbjct: 474 LSSTLVTIIVFLPLAFVSGSVGEMFRPFALAITFSLLASLLVSITVVPALGSTLFRKGIQ 533

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
              +             +    +  ++  + ISI+  + SI L         I       
Sbjct: 534 TKPEKQAQGVINSGYKKLLYWSLNHKWIVIIISIVLLVGSIGLGAAKLGTSYISSGDNKF 593

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +        +         Q+          +          P D    T  + ++  
Sbjct: 594 MALTYTPKPGETEKSVLEHGEQVQKYLKTKNKVKTVQYSVGGPTPSDPTGSTNSMALMVD 653

Query: 641 KITEIVPLSTIQNTEIVGPKISRE 664
              +        +  +      + 
Sbjct: 654 YDKDTPNFEEEPDKVLKHVDSFKH 677



 Score = 93.2 bits (229), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 84/234 (35%), Gaps = 3/234 (1%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +++          +    +   L   + Q  ++V   + ++    +  +         T 
Sbjct: 297 ADISVGDERTSISKTNGKDAVNLQITKAQDANTVQVAKDVQKKVDEFEKNNSEMKAIKTM 356

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                I   L        + + +A+++ +           +I ++ + I   L    L  
Sbjct: 357 DTAKPIEDSLYTMIEKAALGTIVAIVVILLFLRNIRTTAISIVSIPMSILIALVALKLSN 416

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +  N+  + A+   IG  ++D +VV + + + +      +    LI  +  E     + +
Sbjct: 417 VSLNILTLGALTVAIGRVIDDSIVVVENIYRRLSDRNEQLKGDSLIVSATTEVFKPILSS 476

Query: 776 SMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           ++   I  LP+  V G  G +   FA+ + F ++ +   SI +   +   ++  
Sbjct: 477 TLVTIIVFLPLAFVSGSVGEMFRPFALAITFSLLASLLVSITVVPALGSTLFRK 530



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 63/149 (42%), Gaps = 14/149 (9%)

Query: 688  FKWYFAL-GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            F   F+L   I  ++L +  T       G   ++ ++  +L LIG  V + +V+ DR+  
Sbjct: 911  FTILFSLPFTIVGVVLSLVIT-------GETISVPSLIGMLMLIGIVVTNAIVLIDRV-- 961

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
             +    + +  +  + ++    +   + T++A   +++P+     S I      A  +  
Sbjct: 962  -INNEKSGMDMKSALIEAGGTRIRPILMTAIATIGALVPLLFGEDSSILISKGMAATVIG 1020

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G++ +   ++ +   I   ++  + K  R
Sbjct: 1021 GLISSTILTLIVVPVIYEILFTLKDKIYR 1049


>gi|238797000|ref|ZP_04640504.1| Heavy metal efflux pump, CzcA family [Yersinia mollaretii ATCC
           43969]
 gi|238719260|gb|EEQ11072.1| Heavy metal efflux pump, CzcA family [Yersinia mollaretii ATCC
           43969]
          Length = 1032

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 63/524 (12%), Positives = 135/524 (25%), Gaps = 48/524 (9%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             M+   G+       L Q+ LD  P       I           +         V   +
Sbjct: 5   AVMMAAWGIWS-----LQQTPLDALPDLSDTQVI---------IRVSYPGKAPQVVEDQV 50

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
                     +                + + F D         +V  +L  V S L  + 
Sbjct: 51  TYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFDDGTDPYWARSRVLEYLSQVQSTLPAEA 110

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           K +L    T                     +           ++    +  +      ++
Sbjct: 111 KASLGPDATGVGWIYEY-ALIDRSGKHSLADLRALQDWTLKFELKTVPNVSEVASVGGMV 169

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            Q     DP R+R L  +  +++      N    G +  +            ++      
Sbjct: 170 RQYQVVLDPERMRALNLSHQQIASAIADSNQEGGGSVLEMGAAEYMVRASGYLKTP---- 225

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                                +     G              P        +     +  
Sbjct: 226 ---------------DDFRNIVITARDGIPILLSDVATVRMGPEMRRGVAELNGEGEVAG 270

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            I   +   +   TI         ++         +           +            
Sbjct: 271 GIIVMRYGKNALETINGVKEKLQQIQHSLPAGVEIVPVYDRSQLITQAIDSLSFKLLEEF 330

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            +V ++  + + + +  LVA  ++ L ++    ++   G    + S+ GI + IG  VD+
Sbjct: 331 LVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAIGAMVDA 390

Query: 431 NILV-------NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF--- 480
            I++        E+ R ++     V         +A   +  +   +L+   + F     
Sbjct: 391 AIVMIENMHKVLEQWRRDHPGQTPVSQDYWRISEQAAIEVGPALFCSLLIITLSFIPVFT 450

Query: 481 ----GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
                G      A T   ++ +S   AI++V  +M + IR K  
Sbjct: 451 LQAQEGRMFSPLAFTKTYAMAVSAGLAITLVPVLMGYFIRGKIP 494



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 88/254 (34%), Gaps = 16/254 (6%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V LS +     +     +  +N        + L+ +   S        + ++      
Sbjct: 778  GQVALSELADIKVTEGPPMLKSENARLSDWVYIDLRGRDLKSAVTEMQQAVAQQVKLPEG 837

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                         + + +L     + + ++ + + + +++ F       A+    L    
Sbjct: 838  VSLGWSGQFEYLERATAKLK----IVLPVTLMIIFVLLYVTFSSVRD-AALIMATLPFAL 892

Query: 707  TLGFFALFGIEFNLTAVAA--VLTLIGYSVNDKVVVYDRMRKNMKLYT------TSISFR 758
              G + L+G+E+N +  AA   + L G +    V++   + + +K +       T+    
Sbjct: 893  IGGVWLLYGLEYNFSVAAAVGFIALAGVAAEFGVIMVLYLNQAVKKHQQPGIAMTASQMS 952

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFI 815
              I +     +     T       +LP+   GG    V+   A PM  G+V A   S+ +
Sbjct: 953  AAIHEGAVLRVRPKAMTVATIMAGLLPIMWGGGTGSEVMQRIAAPMIGGMVSAPLLSMLV 1012

Query: 816  AAPILLFIYDWRAK 829
               + + ++   +K
Sbjct: 1013 IPAVYMLLHKKESK 1026



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 88/289 (30%), Gaps = 15/289 (5%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                          Y         + + A   + + +       +             +
Sbjct: 206 VLEMGAAEYMVRASGYLKTPDDFRNIVITARDGIPILLSDVATVRMGPEMRRGVAELNGE 265

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
             +                +  VK+K+ +I   S     EIV      +LI + I  +  
Sbjct: 266 GEVAGGIIVMRYGKNALETINGVKEKLQQI-QHSLPAGVEIVPVYDRSQLITQAIDSLSF 324

Query: 676 -----SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
                  +  +I     F +  AL AI TL L I          G+  N+ ++  +   I
Sbjct: 325 KLLEEFLVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAI 384

Query: 731 GYSVNDKVVV---YDRMRKNMKLYTTSISFRD-----LIDKSINETLGRSVYTSMAAFIS 782
           G  V+  +V+     ++ +  +      +        + +++  E       + +   +S
Sbjct: 385 GAMVDAAIVMIENMHKVLEQWRRDHPGQTPVSQDYWRISEQAAIEVGPALFCSLLIITLS 444

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +P+          F+ P+AF    A + S  +A  ++  +  +  +  
Sbjct: 445 FIPVFTLQAQEGRMFS-PLAFTKTYAMAVSAGLAITLVPVLMGYFIRGK 492


>gi|162149188|ref|YP_001603649.1| acriflavin resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545069|ref|YP_002277298.1| acriflavin resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161787765|emb|CAP57361.1| putative acriflavin resistance protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209532746|gb|ACI52683.1| acriflavin resistance protein [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 1057

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 68/600 (11%), Positives = 165/600 (27%), Gaps = 42/600 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V+L  +I   G+   L      +  D FPS                       
Sbjct: 9   LKRPYTFVVLSILIVVFGVKGIL-----NTPTDIFPSIKIPVV---------AIVWTYTG 54

Query: 61  DEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              + ++G +  Y +  L + +             +  + + F           ++T   
Sbjct: 55  LMPEDMSGRVVYYYERSLTATVNNIEHIESGSYYGRGVVKVFFQPGTDTSVAQTQITSVS 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q V  ++       L++T     + ++  Q +  ++     +            +     
Sbjct: 115 QTVIKQMPTGSTPPLILTYNASSVPVLTLQVSSTKMSPS--DVYNMASNLIRPALVSVAG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
           T        +   +  + DP++L     +   +S      N         +  +      
Sbjct: 173 TAIPNPYGGLPSNVMVDLDPTKLLAHKLSPVDVSVALNRQNIVLPAGDQRIGAIDWMVQT 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                D  ++                     DI   ++G           + +      +
Sbjct: 233 NASPRDMEDL--------------------NDIPIKQVGNAVVRLRDVAWVHRGGPPQTN 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++        +       S    +     L   +           V     G    S 
Sbjct: 273 LVLVKGHQGVLIVIMKSGDASTLAVVSGVKALLPSIMKTVPADVKVSVLTDASGFVKDSI 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                     A L  +V+ + +   +  ++   SI L+++ ++  L   G T+   ++ G
Sbjct: 333 RDVLQEMFTAACLTGLVVLLFLGSWRSTVIIATSIPLSMLCSIIGLGWAGQTINAMTLGG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   ++ E I       + +  ++    ++     F S +   I  + LF 
Sbjct: 393 LALAVGILVDDATVMIENIDAHLEMGKDLETAIIDAANQIVIPTFVSTLCICIVWMPLFQ 452

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLI 534
             G         A  +  +++ S   + ++V  M  +I   +        + P + F   
Sbjct: 453 LTGVAGWLFMPMAEAIVFAMMASFILSRTLVPTMAKYILAAQVAAHAHGPVEPKNVFGRF 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                  F R R     + +         +        I       +G      ++   +
Sbjct: 513 QRGFEAGFTRFRERYKILLVGLIDSRRVFVPGFVFVCVISTGLYFTVGEDFFPEINSDTI 572



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 4/146 (2%)

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           L+ +     W   +   T++ L +  ++      G   N   +  +   +G  V+D  V+
Sbjct: 348 LVVLLFLGSWRSTVIIATSIPLSMLCSIIGLGWAGQTINAMTLGGLALAVGILVDDATVM 407

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
            + +                I  + N+ +  +  +++   I  +P+    G     F  P
Sbjct: 408 IENI---DAHLEMGKDLETAIIDAANQIVIPTFVSTLCICIVWMPLFQLTGVAGWLFM-P 463

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDW 826
           MA  IV A  +S  ++  ++  +  +
Sbjct: 464 MAEAIVFAMMASFILSRTLVPTMAKY 489



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 60/155 (38%), Gaps = 5/155 (3%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++S   + + I + F  W      IT L   +        L     ++ A+   +  +G
Sbjct: 894  LLLSVTLVYLLIVVNFQSWVDPFIIITALPGALAGIAWSLFLTHTALSVPALTGAIMCMG 953

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + ++V    R+  ++     + R  I+    E +   + T+ A  I +LPM++   
Sbjct: 954  TATANSILVVSFARE--RMDEHGDAIRAAIEAGY-ERIRPVLMTASAMIIGMLPMSLSNS 1010

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                     +  G++VA  +++     +   I+  
Sbjct: 1011 QN-APLGRAVMGGLLVATLATLIFVPCVFALIHSK 1044


>gi|325109532|ref|YP_004270600.1| heavy metal efflux pump, CzcA family [Planctomyces brasiliensis DSM
           5305]
 gi|324969800|gb|ADY60578.1| heavy metal efflux pump, CzcA family [Planctomyces brasiliensis DSM
           5305]
          Length = 1043

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 72/583 (12%), Positives = 154/583 (26%), Gaps = 47/583 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISL----GLDLRGGSHLVLEVDEDDF 65
           L  +   I +++A         +D  P       + +    GL               + 
Sbjct: 14  LLILCGAIAVIVAGSLVTATLPIDVLPDLTRPRVVIVTECEGL-------------APEE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   + +  +   +          S     + I + F      +     V   +     +
Sbjct: 61  VEQRVTVPLEATINGAAGVIAVRSSSDIGLSVINVEFDWGTDVQTARQIVQERMTLAADQ 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
           L  +    +   ++     IVL     D   +  +E           ++       Q + 
Sbjct: 121 LPENVTPQMGPRSSLLGQ-IVLVGMWSDDGTTSPMELRTMADWVVRQRLRKIAGVSQVIT 179

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
                 Q     D  +L Q   + A++       N +  G                  E 
Sbjct: 180 MGGERKQYHVLADRHKLHQFEVSLAEVEQALRDSNQNVTGGFMERDGKEFLIRGLGRFES 239

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
             EIS   +                       G R         + +          +  
Sbjct: 240 TEEISKTVIRD--------------------DGDRPLLLGHVAEVEEVAQTKRGDSSVNG 279

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
                     +         E        L+    P                S       
Sbjct: 280 HSAVVLTIQKQPGADTRLVTEAIREALLELKPSLPPDVRLQTTYEQREFIDHSVHNVIEA 339

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
               A LV+++LF+ +   +   +   +I L+V++T  +   LG ++ + ++ G+ + +G
Sbjct: 340 LRDGAILVVLILFLFLFNFRTTFITLTAIPLSVLVTALVFRWLGLSINVMTLGGLAVALG 399

Query: 426 LAVDSNILVNERIREENRKNQSVFC------SLDMGFSRAYSTIFDSNITALIATVVLFF 479
             VD  I+  E I    ++N            +        + I  S +  +I    LF 
Sbjct: 400 ELVDDAIVDVENIFRRLKQNAKSDTPQPVLIVIFNASVEVRNAIIISTVLVVIVFAPLFA 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G       I   +SI  S   ++++   +  +++   K+ + + + +    L   
Sbjct: 460 LTGMEGRLFTPLGIAYIVSICASTLVSLTVTPVLSYYLLPRAKVTTQEKDGIVLRVLKAL 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
              +        G+  S+               + G DF    
Sbjct: 520 FRPVIRFSMTPAGLTTSLTILGAGCVTGGLLAYSMGRDFLPPF 562



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 52/434 (11%), Positives = 122/434 (28%), Gaps = 33/434 (7%)

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
             G+     S+ +    I  E      V  +  +   R             +   V    
Sbjct: 76  AAGVIAVRSSSDIGLSVINVEFDWGTDVQTARQIVQERMTLA------ADQLPENVTPQM 129

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G  +     I +         T+   +R M  +++R +  K   ++ +           +
Sbjct: 130 GPRSSLLGQIVLVGMWSDDGTTSPMELRTMADWVVRQRLRKIAGVSQVITMGGERKQYHV 189

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              R +     +S+     ++     +     ++  G   L     R      +   +  
Sbjct: 190 LADRHKLHQFEVSLAEVEQALRDSNQNVTGGFMERDGKEFLIRGLGRFESTEEISKTVIR 249

Query: 601 LQIGDISFQNFDGEKN------------------FLVRLQYQPGDSVAQTRVLEMVKKKI 642
                        E                     L   +    D+   T  +     ++
Sbjct: 250 DDGDRPLLLGHVAEVEEVAQTKRGDSSVNGHSAVVLTIQKQPGADTRLVTEAIREALLEL 309

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLI 701
              +P      T     +     +   I  +   + + +LI     F +      +T + 
Sbjct: 310 KPSLPPDVRLQTTYEQREFIDHSVHNVIEALRDGAILVVLILFLFLFNFRTTFITLTAIP 369

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTTSISF 757
           L +  T   F   G+  N+  +  +   +G  V+D +V    ++ R+++N K  T     
Sbjct: 370 LSVLVTALVFRWLGLSINVMTLGGLAVALGELVDDAIVDVENIFRRLKQNAKSDTPQPVL 429

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIF 814
             + + S+ E     + +++   I   P+    G     F    I     I  +   S+ 
Sbjct: 430 IVIFNASV-EVRNAIIISTVLVVIVFAPLFALTGMEGRLFTPLGIAYIVSICASTLVSLT 488

Query: 815 IAAPILLFIYDWRA 828
           +   +  ++     
Sbjct: 489 VTPVLSYYLLPRAK 502



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 88/266 (33%), Gaps = 25/266 (9%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                +D      + +   + + LS V    E++    I   +        V    +    
Sbjct: 778  QRRDLDNLDRTPMELPNGKVIPLSAVAKVYEAVGPNTIHRDDGRRRIVIRVNTMGRDVGG 837

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW--- 685
                    +  +         T         + +  ++    + +I   + +++Y     
Sbjct: 838  AVGEVKARIANEVALPEGYFITYAGQFEAQQQANSRILWFSGIALIA--VIVVLYSTYNS 895

Query: 686  --IRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
              I F+   A+ A            G F+L   G  F++ A+   ++L G +  + +++ 
Sbjct: 896  FNIVFQLLIAVPA--------AFIGGIFSLYMTGQTFSVAAMVGFISLGGIAARNGLLLI 947

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSF 797
                + M          D+I       L   + T++   + ++P+ + G      ++   
Sbjct: 948  STYLEQM---EDGELTEDIIVAGSLARLAPVLMTALTTGLGLVPLVIGGHLPGKEILFPV 1004

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFI 823
            A  +  G+V A   + F+  P L ++
Sbjct: 1005 ATVILGGLVTATF-AEFLIRPGLFWL 1029


>gi|160895922|ref|YP_001561504.1| CzcA family heavy metal efflux protein [Delftia acidovorans SPH-1]
 gi|160361506|gb|ABX33119.1| heavy metal efflux pump, CzcA family [Delftia acidovorans SPH-1]
          Length = 1056

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 61/532 (11%), Positives = 138/532 (25%), Gaps = 48/532 (9%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L    +   G+         ++ LD  P       I                  
Sbjct: 12  NRFLVLLATVALSAWGIYAV-----QRTPLDALPDLSDVQVI---------IRTTYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PRIVENQVTYPLTTTMLSVPGAKAVRGYSFFGDSFVYVLFEDGTDPYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    K +L    T                     +           ++       +
Sbjct: 118 QSRLPAQAKASLGPDATGVGWIYEY-ALIDRSGKMDISQLRALQDWFLKYELKTVPDVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L        K+       N    G +  +            
Sbjct: 177 VASVGGMVRQYQIVLDPDKLAAYGIPHTKVVEAIQRANQETGGSVLELGEAEYMVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                     V +     G              P      G +
Sbjct: 237 LGSLEDFR------------------KVPLMTTAAGVSVRLGDVARVQIGPEMRRGIGEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   ++  +   TI         L +        +      G    +    
Sbjct: 279 NGEGEAVGGVIVMRSGKNALQTIAAVKGKLQGLASSLPRGVEIVPVYDRSGLIERAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V F+ + + +  LVA  S+ L ++    ++   G    + S+ GI +
Sbjct: 339 THKLIEEFIVVAVVCFLFLFHLRSALVAIISLPLGILAAFIVMHYQGVNANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNITAL 471
            IG  VD+ +++ E   +                 + +  +    +     +F S +   
Sbjct: 399 AIGAMVDAAVVMIENAHKHLEHWGHEHPGETLEGTARWHVIGESAAEVGPALFFSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           ++ V +F      G      A T   ++  +   +++++  +M +++R +  
Sbjct: 459 LSFVPVFTLEAQEGRLFSPLAFTKTYAMAAAAGLSVTLIPVLMGYLVRGRIP 510



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 82/247 (33%), Gaps = 9/247 (3%)

Query: 594  VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            V S++  +++ D               +     D   ++ V +M +    ++        
Sbjct: 797  VLSDVADIRVADGPPMLRSENARLSGWVYVDIRDRDLRSAVQDMQQAVEKQVKLPPGYSI 856

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
            +     +       K  V V  + + + + +++ F  +  AL  +  L   +   +    
Sbjct: 857  SWSGQFEFLERATAKLKVVVPFTLLIIFVLLYLTFGAFGEALLIMAALPFALVGGIWLLY 916

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL-----YTTSISFRDLIDKSINE 767
            L G   ++      + L G S    V++   ++   +       T+     D I +    
Sbjct: 917  LLGYNLSIAGAVGFIALAGVSAEFGVIMLLYLKNAWQERADQGKTSEADLLDAIREGAVL 976

Query: 768  TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
             +     T       +LP+      G  V+   A PM  G+V A   S+F+     L + 
Sbjct: 977  RVRPKAMTVAVILAGLLPIMWGTGTGSEVMQRIAAPMVGGMVTAPLLSMFVIPAAYLLMR 1036

Query: 825  DWRAKNA 831
              R + A
Sbjct: 1037 RSRERKA 1043



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 62/171 (36%), Gaps = 15/171 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++++ +  L      F    AL AI +L L I          G+  N+ ++  +   IG 
Sbjct: 347 IVVAVVCFL----FLFHLRSALVAIISLPLGILAAFIVMHYQGVNANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVL 784
            V+  VV+ +      ++        +        +I +S  E      ++ +   +S +
Sbjct: 403 MVDAAVVMIENAHKHLEHWGHEHPGETLEGTARWHVIGESAAEVGPALFFSLLIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+          F   A    + +  AA  S+ +   ++ ++   R  + +
Sbjct: 463 PVFTLEAQEGRLFSPLAFTKTYAMAAAAGLSVTLIPVLMGYLVRGRIPDEK 513


>gi|283457126|ref|YP_003361690.1| putative drug exporter of the RND superfamily [Rothia mucilaginosa
           DY-18]
 gi|283133105|dbj|BAI63870.1| predicted drug exporter of the RND superfamily [Rothia mucilaginosa
           DY-18]
          Length = 937

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 94/906 (10%), Positives = 234/906 (25%), Gaps = 112/906 (12%)

Query: 3   NNPWLVILYSMICCIGLL-------------IALPNFLPQSMLDRFPSAMPKNRISLGLD 49
              W VIL  ++   G+                +P    Q + D      P         
Sbjct: 14  RRAWAVILTWVLIVAGVAGAYTAFHGKLSNTFTMPGTQTQQLSDELAQRFPSAN------ 67

Query: 50  LRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE 109
            RG   ++L   +   +    +       S L  E           + +T  F  +    
Sbjct: 68  -RGSGQIILTTGDGTALTEEQKQAFSAALSALPSE-------VPSVDAVTDPFTTTSKFA 119

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
               ++      +           +     +   +    +    Q+  +  +        
Sbjct: 120 EAKTQLDEAHAKI-----DAAPAQIEDGKEQLSAAASQIEEGTKQIAENEKKLDD----- 169

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
                  S          ++       +D     +  G+ A+M                 
Sbjct: 170 -SQAQITSGQEQLASAQKQLDDAQARLKDGYAQAEAAGSPAEMMEQLNAQQAQLTEQQNA 228

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
           +   RD+        D             A    K  +    +   E       E     
Sbjct: 229 LNQQRDTLTESQKQVDAGRAEIASKKEELAEGKKKLDEQRNQLQKTESELPAQREQLERQ 288

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
                       V        A  S K +I    + E   +++ +  A      +     
Sbjct: 289 QKLYDFTSGYRMVSEDRSTAIATVSFKKKIYEVPSAELQKVMSDIESANLHGATVQFDAN 348

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
            +  A  G     +    ++A +VL+V+   ++     ++      +  +L    LS + 
Sbjct: 349 LSESALGGGSHTGEVAGMVIAFIVLMVMLGTLVAAGLPILMSLGGMVVGVLGTLSLSSVV 408

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
              +     G++LG+ + +D ++ +  R R           ++ +    + + +  +  T
Sbjct: 409 QMSSTAYTLGLMLGLAVGIDYSLFILNRYRTNLLDGMPKVQAIALANGTSGNAVIFAAST 468

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
            +IA V L   G   +          ++++   A+++  A++         K +  +  +
Sbjct: 469 VIIALVALNVTGIPFLGVMGNAAAFCVVVAALIAVTLTPAVLSVAGTKIMPKKLWASIDT 528

Query: 530 RFF----------LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
                                  +      + + +              +  G+      
Sbjct: 529 PQKIAERRAQDAERTEKPNGWLRLVLARPLLTLVVGTVALLAVAAPMSQMRLGLPDASNY 588

Query: 580 Q---------------------------------LGVLANRPVDLSVVRSNLESLQIGDI 606
                                             +     +   + +  +  E       
Sbjct: 589 PSDSAAYKSYALVKDKFGEGMSAPLVAVAHTSANMSEEQAQQAQIDIASAVKERGGANVQ 648

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST-------IQNTEIVGP 659
           +        +  + +        A +   E +  ++  +            I        
Sbjct: 649 AVVPGGMTDDRTLMIFQVIPAHSASSVETEELVHELRAVTVPVQGSEVSLGIAGQTSGNI 708

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFF------- 711
            +S  L +K  + + +      + + + F+     L A    +  +  + G         
Sbjct: 709 DVSEVLAQKLPLYLGVVMGLSFLVLILVFRSIMVPLVASVGFLFSVLASFGAVVSIYQLG 768

Query: 712 ---ALFGIE-------FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              +LFG++       F  T +  +L   G +++ ++ +   MR+    Y         I
Sbjct: 769 FMSSLFGVDHPGPVLSFLPTLLIGIL--FGLAMDYQMFLVTGMRE---AYVHGKDAATAI 823

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS-SSIFIAAPIL 820
               N  +   V  ++              ++I      +AFG++V A    + +   I+
Sbjct: 824 VSGYNHAVRVVVAAAIIMISVFGGFIFADSTMIRPMGFGLAFGVLVDAFIVRMTLTPAIM 883

Query: 821 LFIYDW 826
             + D 
Sbjct: 884 ALLGDR 889


>gi|311104345|ref|YP_003977198.1| cation efflux system protein CusA [Achromobacter xylosoxidans A8]
 gi|310759034|gb|ADP14483.1| cation efflux system protein CusA [Achromobacter xylosoxidans A8]
          Length = 1038

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 65/593 (10%), Positives = 156/593 (26%), Gaps = 49/593 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L  +M+   G+       +  + +D  P       I                  
Sbjct: 12  NRFLVLLATAMLTAWGVW-----GVRSTPVDALPDLSDVQVI---------IRTNYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGFSFFGDSFVYVLFEDGTDLYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    K  L    T                 +   +           ++    +  +
Sbjct: 118 QGRLPATAKPALGPDATGVGWIFQY-ALVDRTGKNDLAQLRALQDWFLKFELKSLPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L     + A++                          NQ  
Sbjct: 177 VASVGGMVKQYQVVLDPIKLASYGLSQAQVRDAL-------------------MGANQET 217

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +E+SG       + +     +          G              P        +
Sbjct: 218 GGSVLELSGAEYMVRASGYLKTLDEFREIPLTARGGVPVRLGDVATLQIGPEMRRGIAEL 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI       A L+    P    +           +    
Sbjct: 278 DGEGEVAGGVVVLRSGKNAQETIAAVKAKLAELQGSLPPGVEIVTSYDRSALIERAIRNL 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  S+ L V+    ++   G    + S+ GI +
Sbjct: 338 TTKLGEEFLVVALVCALFLWHLRSALVAIISLPLGVMTAFLVMRYQGINANIMSLGGIAI 397

Query: 423 GIGLAVDSNILVNERIR-----------EENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            +G  VD+ +++ E              ++  + +  +  +          +F S +   
Sbjct: 398 AVGAMVDAAVVMIENAHKKLEAWQHAHPDQRLQGKERWDVITQAAEEVGPALFFSLLIIT 457

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++  +   +++++  +M + IR +          
Sbjct: 458 LSFIPVFTLEAQEGRLFGPLAFTKTYAMAAAAGLSVTLIPVLMGYWIRGRIPDEQKNPIT 517

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                    +     R +   +   +  +  +  L    G       +G +  
Sbjct: 518 RILIAAYRPLEWVLRRPKATLLIAVLALATTAWPLARLGGEFLPRLDEGDLLY 570



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/282 (14%), Positives = 89/282 (31%), Gaps = 14/282 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L  V     +     +  +N     
Sbjct: 761  LARFPINLRYAREWRDSPQRLAELPIFTPMGQQITLGTVARIAITDGPPMLKSENARPSG 820

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V ++ +   SVA      + ++   E     T         + +  L     V V  
Sbjct: 821  WVYVDVRGRDLASVANELRDAIGQQVKLEPGVSITYSGQFEYMERANARLK----VVVPA 876

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + + +++ F +   A   + TL   +T  + F  L     ++      + L G + 
Sbjct: 877  TLLIIFVLLYLTFARVDEAGLIMATLPFALTGGIWFLYLLNYNLSIATGVGFIALAGVAA 936

Query: 735  NDKVVVYDRMRKNMKLY------TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
               VV+   +++ +          T     D I +     +     T       ++P+  
Sbjct: 937  EFGVVMLIYLKQALAERCPDGRDPTREELLDAIREGAVLRVRPKAMTVAVILAGLVPIVW 996

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                G  V+   A PM  G+V A   S+F+     + +   R
Sbjct: 997  SSGTGSEVMSRIAAPMLGGMVTAPLLSLFVIPAAYMLMRKPR 1038


>gi|149917253|ref|ZP_01905752.1| heavy metal efflux pump [Plesiocystis pacifica SIR-1]
 gi|149821860|gb|EDM81254.1| heavy metal efflux pump [Plesiocystis pacifica SIR-1]
          Length = 1043

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/531 (13%), Positives = 152/531 (28%), Gaps = 34/531 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + ++   +  IGLLI       +S  + FP+      I             L    
Sbjct: 8   RPTLVHVITIAVLAIGLLII-----GRSQREGFPAVTINEVI---------VTTFLPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSF---ADSRFKENIADKVTLFL 119
              V   L    +E  S +           +  ++I +S     D+   + +  ++   +
Sbjct: 54  PADVEAKLTQPLEEQISKVDGVDEYTSVSSEGVSRIVVSLYEDLDASEVQEVERELQKAV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +           +L      + +++    +             E +     +I     
Sbjct: 114 DAIPDLPPDLEIPPVLSRFNPAKRAVLEVAVSGPDAALR------EALDTLTPRIEAIPG 167

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                       ++    DP R R    T  ++       N +  G              
Sbjct: 168 IGSVEEIGMGDPEIEVLLDPVRARAQQVTLDEVMAALQRRNLASTGGKL----------T 217

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
            Y V+ +V +SG + +           +    ++             RD     +     
Sbjct: 218 AYPVQRQVVLSGEYRDAGEVGDTILRFQDRSTLAPGAPPGTGGALRIRDVAEVRVTREDI 277

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G  + A     A    + + S +       + A + +                       
Sbjct: 278 GMRVHAEGERSANLIIRKRESADILDTVDAVYAVLEQTALPESVTVRTYNDASRLTRNRL 337

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
            +          LVL VL + +       VA F +   ++   A L  +G ++ + S+AG
Sbjct: 338 DVVITNGVGGVVLVLAVLLLFLSGRVAFWVA-FGLPFALLGVAAFLPAIGISINMISLAG 396

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            VL IG+ VD  I++ ERI            +  +G       +  S++T ++A   LF 
Sbjct: 397 FVLVIGIVVDDAIIIAERIAFHLEAGVDPHEAAVLGTREMAIPVIGSSLTTILAFSPLFL 456

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            GG   +       + IL  + +       +   I+ + +           
Sbjct: 457 LGGIPGKFSWAIPAIVILTLIVSLFECFFILPSHIVGHGEKPKKPRPKARF 507



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 56/151 (37%), Gaps = 18/151 (11%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
           W+ F   FAL  +   +  I          GI  N+ ++A  + +IG  V+D +++ +R+
Sbjct: 366 WVAFGLPFALLGVAAFLPAI----------GISINMISLAGFVLVIGIVVDDAIIIAERI 415

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM--- 801
                     +   +       E     + +S+   ++  P+ + GG     F+  +   
Sbjct: 416 ---AFHLEAGVDPHEAAVLGTREMAIPVIGSSLTTILAFSPLFLLGGIPGK-FSWAIPAI 471

Query: 802 -AFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               ++V+     FI    ++   +   K  
Sbjct: 472 VILTLIVSLFECFFILPSHIVGHGEKPKKPR 502



 Score = 67.4 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 87/226 (38%), Gaps = 11/226 (4%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
            ++ + DG +   +    +P        +   V  ++  +       +  +          
Sbjct: 800  AYHHRDGVRTTTIVGSIEPSSGETSKSIAATVGAELIPLYEGGERSSPSLRVYVGGEATK 859

Query: 667  RK-----GIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
                     + + ++ I + ++ + +      AL  ++ + L +   +  +A  GI  +L
Sbjct: 860  TDETLGEMPMVLGLALIGIVMVVMLLTGSLTQALFVVSAVPLGLIGVVWAYATHGIPISL 919

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRM-RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
             A+  V  L G  VND +V+   + R  +         R++   + +E L   + T++  
Sbjct: 920  FALLGVTGLSGVVVNDSIVMVTSLNRTGLGEGEVGELIREVAQIA-SERLRPVLLTTLTT 978

Query: 780  FISVLP-MAVWGG--SVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               V+P     GG  +++   ++ + +G++ A S ++ +   + + 
Sbjct: 979  VAGVMPTAYGLGGRDALLSPMSLALGYGLIFATSITLVLVPSLYVI 1024


>gi|323483864|ref|ZP_08089241.1| hypothetical protein HMPREF9474_00990 [Clostridium symbiosum
           WAL-14163]
 gi|323402818|gb|EGA95139.1| hypothetical protein HMPREF9474_00990 [Clostridium symbiosum
           WAL-14163]
          Length = 1004

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 82/622 (13%), Positives = 191/622 (30%), Gaps = 49/622 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +++    V+    +   G+          + L++ P       I                
Sbjct: 10  LKHPVTTVMALLCLIVFGITSVF-----SAKLEQMPDMETPMLI---------VRAGYSG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    ++  S L+       +       + L +      +   D +   L+
Sbjct: 56  AGPEDICELVTEPIEDAISTLEGVKTMSSTSSDGSAMVMLEYDYGTDMDEAYDNLKKKLE 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  D   +++  +     +++LS ++  Q           + +  + +     S 
Sbjct: 116 NAKRNLPDDVDTSIMEMSMNAGTTMMLSISHSRQEN-----LYDYVDQNIVPEFERISSV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +  E    +L Q   T + ++      N +          L  S    
Sbjct: 171 AEVSAMGGSSEYIKIELLSEKLEQYGLTMSDVTSAISTANLAYPSGEAVAGNLELSVTTS 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              E   E+                     DI                NI +        
Sbjct: 231 LETEQVGELQ--------------------DIPIATATGELVMLSDVANIYEAKEDRGGV 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        + +   +          + A L AG   +    V      + L S  
Sbjct: 271 SRYNGEETISLSITKQQSNTAMEVSSAVKSVIATLEAGDEDLH-INVANDTSESILDSLM 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   + +IV+F+     K  L+   SI  +++++L  ++  G +L + +++ +
Sbjct: 330 DVAVTMVLAVIISMIVIFLFFGDYKASLIVGSSIPTSILMSLIAITAAGFSLNVITMSAL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQS-----VFCSLDMGFSRAYSTIFDSNITALIATV 475
           VLG+G+ VD++I+V E        ++         +   G +   ++I  S IT  +  +
Sbjct: 390 VLGVGMMVDNSIVVLESCFRATAGSRDKGILGYSRAALEGTALVGNSIIGSTITTCVVFL 449

Query: 476 VLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   +    T+   +  S+ +A++IV    +F    +  K++   P+ RF 
Sbjct: 450 PLAGIQGMTGQMFKPLGYTVVFCMAASLLSAVTIVPLCYLFYKPAETQKAVMSLPIERFQ 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGVLANRPVDL 591
                +  + ++ +   +  S+     ++ L           D  G + + +     +  
Sbjct: 510 RFYRQVMEKLLKRKGMVMLASVAILAATVYLASGMQAELMTSDDTGTVSVSIETRPGLLQ 569

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
             V   LE  +    + +N D 
Sbjct: 570 EKVNDALEQAEAVVAADENVDS 591



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 88/238 (36%), Gaps = 13/238 (5%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + +  +   D        +K + + +         +  +   V              + +
Sbjct: 769 TQVADVIFKDSPSSISKTDKAYEITISGDYTGGNTKAAIDSEVISPNLTGTISLGTNSRD 828

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +  +    L       +  +   + + +  +F+   F++  +TT+   +  + GF  + 
Sbjct: 829 RMMQEEFGSLYS----AIAFAVFLVFVVMASQFESVKFSVMVMTTIPFSLVGSFGFLKIT 884

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G+  ++T +   L LIG  VN+ ++  D     +  Y   +     + ++    +   + 
Sbjct: 885 GVTISMTTLLGFLILIGTVVNNGILYVD----TVNQYRQEMDLHTALVEAGATRIRPILM 940

Query: 775 TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           TS+   +S++PMA+     GS     AI    G+ V    ++F+  P+   +   R K
Sbjct: 941 TSLTTILSMIPMALAIGSSGSTTQGIAIVDIGGLAVGVIVALFML-PVYYGLLSRRPK 997



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 86/259 (33%), Gaps = 6/259 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V LS V +  E+ +      +    E   L   + Q   ++  +  ++ V 
Sbjct: 243 PIATATGELVMLSDVANIYEAKEDRGGVSRYNGEETISLSITKQQSNTAMEVSSAVKSVI 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
             +        I         I   L+   +  V+   I+M++       +  +L   ++
Sbjct: 303 ATLEAGDEDLHINVANDTSESILDSLMDVAVTMVLAVIISMIVIFLFFGDYKASLIVGSS 362

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MRKNMKLYTTS-ISF 757
           +   I  +L      G   N+  ++A++  +G  V++ +VV +   R          + +
Sbjct: 363 IPTSILMSLIAITAAGFSLNVITMSALVLGVGMMVDNSIVVLESCFRATAGSRDKGILGY 422

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMAFGIVVAASSSIF 814
                +         + +++   +  LP+A      G +       + F +  +  S++ 
Sbjct: 423 SRAALEGTALVGNSIIGSTITTCVVFLPLAGIQGMTGQMFKPLGYTVVFCMAASLLSAVT 482

Query: 815 IAAPILLFIYDWRAKNARI 833
           I  P+    Y        +
Sbjct: 483 IV-PLCYLFYKPAETQKAV 500


>gi|332881513|ref|ZP_08449162.1| heavy metal efflux pump, CzcA family [Capnocytophaga sp. oral taxon
           329 str. F0087]
 gi|332680511|gb|EGJ53459.1| heavy metal efflux pump, CzcA family [Capnocytophaga sp. oral taxon
           329 str. F0087]
          Length = 1030

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 75/611 (12%), Positives = 183/611 (29%), Gaps = 49/611 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N  +++I   ++   GL  A    +        P+ +            GG       
Sbjct: 10  LQNRLFILIASVLLMIGGLYQAYHTEVDVFPDLNAPTVVVMTE-------AGGM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPIETAVNGATSVRRVRSSSTTGFSVVWVEFDWDTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  +     L   +     +++     D      ++           ++  +   
Sbjct: 116 TVAESLPDNVGNPTLGPQSSILGELLIVGLTADSTSM--LDLRTLADWVIRPRLMSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +      P R++    T  ++       N +  G +          GN+
Sbjct: 174 AQVAVLGGDIKEYQVLLHPERMKHYGVTLGEVMDVTRNMNTNTNGGVI------YQYGNE 227

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+V   V    +   G               I           ++     G     +   
Sbjct: 228 YIVRGVVSTDDVRKMGRA------------VIKTVGGSPVMLEDIADVKTGSQQPKLGLA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P +   +       +   T +    L  + ++    ++++    R       S  
Sbjct: 276 SEKGKPAVLLTVTKQPNTGTIELTGKLEEALQDLQKSLPADVRMSTDVFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +    A  V+IVLF+ +   +  +++  ++ L++++T+ +L  +G T+   S+ G+
Sbjct: 336 NVQDSLLEGAIFVVIVLFLFLGNVRTTVISLVTLPLSLLVTILVLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+ +  S        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVWKHLRENRMLPESERLRVRDVVFNASREVRMPILNSTLIIIV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM----KSIDI 525
           + V LFF  G   R      +   +S+  S   A+++   +  +++ +K           
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGVAFIVSLFASTIVALTLTPVLCSYLLGHKAKTGGLPKEAF 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +       + ++      +        LF       L           +G   + + +
Sbjct: 516 LAVYLKKHYQNGLSWALSHKKIVLGTTLTLFVAALGSFLTLGRSFLPPFNEGSFTINISS 575

Query: 586 NRPVDLSVVRS 596
              + L     
Sbjct: 576 LPGISLEESDK 586



 Score = 70.9 bits (171), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 94/273 (34%), Gaps = 11/273 (4%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS--V 629
            +   G   +  +   PV L  +       Q   +   +  G+   L+ +  QP      
Sbjct: 238 DVRKMGRAVIKTVGGSPVMLEDIADVKTGSQQPKLGLASEKGKPAVLLTVTKQPNTGTIE 297

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRF 688
              ++ E ++     +     +        +     I      ++  +   +++      
Sbjct: 298 LTGKLEEALQDLQKSLPADVRMSTDVFRQSRFIESSIGNVQDSLLEGAIFVVIVLFLFLG 357

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---- 744
                + ++ TL L +  T+      G+  N  ++  +   IG  V+D +V  + +    
Sbjct: 358 NVRTTVISLVTLPLSLLVTILVLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVWKHL 417

Query: 745 RKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIP 800
           R+N  L  +  +  RD++  +  E     + +++   +S +P+    G    ++    + 
Sbjct: 418 RENRMLPESERLRVRDVVFNASREVRMPILNSTLIIIVSFVPLFFLSGMEGRMLVPLGVA 477

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               +  +   ++ +   +  ++   +AK   +
Sbjct: 478 FIVSLFASTIVALTLTPVLCSYLLGHKAKTGGL 510



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 98/266 (36%), Gaps = 18/266 (6%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            +    +  + N  +D +       S      S    +      V+ +     + +   + 
Sbjct: 770  ENRSTMERIRNLMIDDAKGNKVPFSYVADIRSSMGPNTINRENVKRKIVISANASGRDMR 829

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWY-F 692
             +V    + I     +     +      E        +++      ++I++ + F++   
Sbjct: 830  SVVNDIRSRIDEKVKLPEGYHIEYGGQFESEESASRVLLLTSFISIVVIFLLLYFQFRNA 889

Query: 693  ALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKN 747
            A   +  L L +    G FAL     E ++ A+   ++L G +  + +++       R+ 
Sbjct: 890  AQSGVILLNLPLALIGGVFALLLTTGEISIPAIIGFISLFGIATRNGMLLISHYNTLREE 949

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAF 803
                   +S R+ I     + L   + T++++ ++++P+A+     G+ I S  A  +  
Sbjct: 950  ------GLSLRESILHGSLDRLNPILMTALSSALALIPLALRGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAK 829
            G++ +   + FI   I  ++     +
Sbjct: 1004 GLLTSTFLNAFIIPIIYEWMNRKSVR 1029


>gi|197120212|ref|YP_002140639.1| RND family efflux pump inner membrane protein [Geobacter
           bemidjiensis Bem]
 gi|197089572|gb|ACH40843.1| efflux pump, RND family, inner membrane protein [Geobacter
           bemidjiensis Bem]
          Length = 1077

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 64/541 (11%), Positives = 164/541 (30%), Gaps = 26/541 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +    ++ +    +GL   +         +  P  +               +  +     
Sbjct: 17  SKLTPLIVAASLLLGLYSIVAT-----PREEEPQIVVPMV---------DIYFPMPGSSP 62

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   L    ++    +K         +     IT+ F      EN   K+   +    
Sbjct: 63  KEVEERLINTFEKKIWEIKGVEYLYSVSKPGMGMITVRFLVGEDMENSLVKLYNKVMSNR 122

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           + L     + L+V+ +  ++ I+      D+   HA+ +   + R+  D +   ++    
Sbjct: 123 NFLPPGAAEPLVVSKSIDDVPILSLTLWSDRYDHHALRR---VARELCDDLQKVDNVANS 179

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                +  +L    D +RL     T   +       N +++                  +
Sbjct: 180 EIRGGVSRELKVRLDAARLSSYALTPVAVMGALERGNVAQRAGAVSSGNRDYKLDAGSFI 239

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +   + ++         +    V     E     FF +      K L         
Sbjct: 240 STPEDARRLVVSVKDGRPVYLSDVATVTDDVQEPKDYVFFGLGPAAAHKGLKGGAADY-- 297

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                     + +   +  +  E         +   +P ++ +   RN G      +   
Sbjct: 298 ---PAVTISIAKRKGANATWVAEDLLKRVEFQKGKLIPSEMQVTVTRNYGETAKDKNNEL 354

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                +A + + +L  + +  + G VA  +I + + LT+ + + +G TL   ++  ++  
Sbjct: 355 LFHMFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMFIFNRIGYTLNRITLFALIFS 414

Query: 424 IGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           IG+ VD  I+V E I             +         +    + +  + + + + F G 
Sbjct: 415 IGILVDDAIVVVENIHRYFTTTRLKPLEAAVRAVDEIGNPTMLATLAVIASILPMGFVGG 474

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G  +R   +   ++++ S+  A+ +        ++ +     +  P   +        
Sbjct: 475 LMGPYMRPIPVGASMAMVFSLLIALIVTPYFAYRFMKGESHYGSEAPPDESWMTRFYRRL 534

Query: 540 I 540
           +
Sbjct: 535 M 535



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 66/156 (42%), Gaps = 5/156 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++AI++ I I +   W     A   + + +  T+  F   G   N   + A++  IG 
Sbjct: 358 MFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMFIFNRIGYTLNRITLFALIFSIGI 417

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + + +     TT +   +   ++++E    ++  ++A   S+LPM   GG 
Sbjct: 418 LVDDAIVVVENIHRYFT--TTRLKPLEAAVRAVDEIGNPTMLATLAVIASILPMGFVGGL 475

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +   +    +  +  +V +   ++ +          
Sbjct: 476 MGPYMRPIPVGASMAMVFSLLIALIVTPYFAYRFMK 511



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 60/164 (36%), Gaps = 6/164 (3%)

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
                 ++  I +L+  W R  +   L  +  + L +   L   AL G  F  T++   + 
Sbjct: 908  AAFAAVMVLIYVLVVAWFR-DFTTPLVIMAPIPLTLIGILPGHALMGAFFTATSMIGFIA 966

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L G  V + +++ D     ++     ++  + I  +        + T+ A  +    +  
Sbjct: 967  LAGIIVRNSIILID--FAELRR-REGMALDEAIIDAGAIRFRPMLLTAAAVVVGSFVILF 1023

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                +    A+ M  G + + + S      +   +  W+ K+ +
Sbjct: 1024 --DPIFQGLALAMMCGEIASTTLSRITIPILYFMVESWKEKHKK 1065


>gi|119776320|ref|YP_929060.1| CzcA family heavy metal efflux protein [Shewanella amazonensis
           SB2B]
 gi|119768820|gb|ABM01391.1| heavy metal efflux pump, CzcA family [Shewanella amazonensis SB2B]
          Length = 1066

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 87/691 (12%), Positives = 192/691 (27%), Gaps = 59/691 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED------ 63
           L  +I  IG + A    LP+  LD FP                 +++ ++V+        
Sbjct: 14  LIVLIFLIGAMAAAAVMLPKLNLDAFPDV---------------TNVQVQVNTAAEGLAA 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    +     L          R   + +T+ F +         +V   LQ   
Sbjct: 59  EEVEKLISYPVESAMYALPSVTEVRSLSRTGLSIVTVVFEEGTDIYFARQQVFEQLQAAR 118

Query: 124 SKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +        +   T+              +      E            +        
Sbjct: 119 EAIPDGVGVPEIGPNTSGLGQVYQYILRAAPESGIAPDELRSLNDYLVKLIMMPVGGVTD 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            L     + Q   + DP++L         ++      N +  G+             Q +
Sbjct: 179 VLSFGGEVRQYQVQVDPAKLLSYGLKLDDVTRALEGNNRNAGGWFMAKG------QEQLV 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +             P T      +   ++    F    R            G  
Sbjct: 233 VRGYGLLPAGEAGLDAIAQIPLTEWQGTPVRIMDVAQVAFGSEIRVGAVTMTRRDEAGSP 292

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   +   +   TI+      A+++          V          + +  
Sbjct: 293 QVLGEVVAGVILKRMGANTKATIDDINSRTALIQQALPDGVTFEVFYDQSDLVTKAVTTV 352

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    +    ++ VL + ++  +   +   SI +++ L L ++S  G +  L S+ G+ +
Sbjct: 353 RDALLLAFMFIVAVLALFLVNVRATALVLLSIPVSIALALMVMSYFGMSANLMSLGGLAV 412

Query: 423 GIGLAVDSNILVNERIREE-------------NRKNQSVFCS------------LDMGFS 457
            IG+ VD ++++ E I                     S   +            +     
Sbjct: 413 AIGMLVDGSVVMVENIFRHLTQPEGRVDNGLPTDPGLSEEDAHREGGYGGIAMRILQAAR 472

Query: 458 RAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              S IF + +  ++    LF      G   +  A+++ L++L ++  A+ +V A+ +++
Sbjct: 473 EVCSPIFFATLIIIVVFAPLFALEGVEGKLFQPMAVSIILAMLSALMVALVVVPALAVYL 532

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
            R                     +     R +  G+   +LF +    L           
Sbjct: 533 FRRGVHLRQSPLLTPIDKGYRRVLGAVMARPKTVGITALVLFGLSMALLPRLGTEFVPEL 592

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +G I L V       L     +L      +     F      L R+         +   
Sbjct: 593 EEGTINLRVTLAPTASLDT---SLMVAPKLEAMLMEFPEVDYALSRIGAPELGGDPEPVS 649

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
              +   +  I    +  +   +   +  +L
Sbjct: 650 NIEIYIGLKPIDEWQSAASRAELQRLMEEKL 680



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/246 (11%), Positives = 89/246 (36%), Gaps = 9/246 (3%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             + + VR    +  + +++  N   +      +            V++ +   + E    
Sbjct: 819  ANGARVRLGEVADVVVEMAPPNIRRDDVQRRVVVQANVSGRDMGSVVKDIYALVPEADLP 878

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                 +     +  +    + ++ V +S   + + ++  F     +G I   +  +    
Sbjct: 879  PGYTVSVGGQYENQQRAQARLMLVVPVSIGLIALLLYFSFGALKQVGLIMANV-PLALIG 937

Query: 709  GFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            G  AL+  G   ++ +    +TL G +V + VV+ D +    +           + +   
Sbjct: 938  GVVALYVSGTYLSVPSSIGFITLFGVAVLNGVVLVDSIN---QRRAGGEGLYQAVYEGTA 994

Query: 767  ETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + T++ + + ++P+ +    G  +    A+ +  G+  + + ++ +   + + +
Sbjct: 995  ARLRPVLMTALTSALGLIPILLSSGVGSEIQQPLAVVIIGGLFSSTALTLLVLPTLYMAL 1054

Query: 824  YDWRAK 829
            Y    +
Sbjct: 1055 YRQNDR 1060



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 93/315 (29%), Gaps = 28/315 (8%)

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
                      V    L       L     +         +++  +A       +    +
Sbjct: 222 WFMAKGQEQLVVRGYGLLPAGEAGLDAIAQIPLTEWQGTPVRIMDVAQVAFGSEIRVGAV 281

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
              +  +       GE    V L+    ++ A    +      I + +P           
Sbjct: 282 TMTRRDEAGSPQVLGEVVAGVILKRMGANTKATIDDINSRTALIQQALPDGVTFEVFYDQ 341

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE 717
             +  + +      ++++ + ++  + +           + ++ + I   L   + FG+ 
Sbjct: 342 SDLVTKAVTTVRDALLLAFMFIVAVLALFLVNVRATALVLLSIPVSIALALMVMSYFGMS 401

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMR----------------------KNMKLYTTSI 755
            NL ++  +   IG  V+  VV+ + +                       ++        
Sbjct: 402 ANLMSLGGLAVAIGMLVDGSVVMVENIFRHLTQPEGRVDNGLPTDPGLSEEDAHREGGYG 461

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
                I ++  E      + ++   +   P+    G     F  PMA  I++A  S++ +
Sbjct: 462 GIAMRILQAAREVCSPIFFATLIIIVVFAPLFALEGVEGKLFQ-PMAVSIILAMLSALMV 520

Query: 816 A----APILLFIYDW 826
           A      + ++++  
Sbjct: 521 ALVVVPALAVYLFRR 535


>gi|320534400|ref|ZP_08034884.1| protein-export membrane protein SecD [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320133399|gb|EFW25863.1| protein-export membrane protein SecD [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 645

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 96/561 (17%), Positives = 198/561 (35%), Gaps = 92/561 (16%)

Query: 52  GGSHLVLEV---DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFK 108
           GG+ L+L     D     +  ++   + +R  +   G+    + +   +  +     +  
Sbjct: 2   GGTQLILTPTTSDGSAISDSDVEQAIEVIRQRVDASGVSEAQISRQGGQNIVVSLPGKPS 61

Query: 109 ENIADKV-------------------TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
           +   + V                       + + S+       +   +    +       
Sbjct: 62  QATLELVRTSAVMYFRPVLRVLEGSAQQAAKNIASQNPSGAPPSAPTSQPSAQAQAQPDP 121

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
           N   +      + +         +            + +   Q    ++ ++    +   
Sbjct: 122 NGGGEATQPPADSTGAEEGSGEGEQATPTPAPTAQPTAQSTAQPRTPEEIAKQLADVNQD 181

Query: 210 AKMSFH---------------------------------KVLPNNSKKGFMFGVRFLRDS 236
             +S                                           K  +        S
Sbjct: 182 GVISSDPLPAQDKTNSSDSWITEKLLYDGYMTDCTDPKNLTGQTQDPKAAVVSCSKEAGS 241

Query: 237 DGNQYLVEDKVEISGIHLNG-----ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +   +    EISG  L          +    T++ VV ++F+  G ++F E+++  + 
Sbjct: 242 QQHGAYILGPAEISGTELKSANSGLEADSRGQTTNQWVVSLTFNADGTKKFSELSKRLLT 301

Query: 292 KPLAVVLDGRVLTAPV----------------------------INQAIPSGKAQISGNF 323
                   G                                   ++  I  G+ QI+G+F
Sbjct: 302 YRDQASAAGAQGAQNPQAQHLGDKAQFAIVLDGLTVMASGFNETVHSPITDGRVQITGHF 361

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
               A  LA  L  GSLP+   +  E+ + A LG++ +  G  A + G  LI+L++   Y
Sbjct: 362 NQNQANTLANQLSFGSLPLSFTVQSEQQISATLGTEQLRNGLIAGLIGFALIILYLAWQY 421

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATL----TLPSIAGIVLGIGLAVDSNILVNERIR 439
               +VA  S+ +    T  +++ L AT+    +L  +AG+++ IG+ VDS I+  ER+R
Sbjct: 422 RGLAVVAVASLVVAAAGTYLVIAALSATMGYRLSLAGVAGLIISIGITVDSFIIYFERVR 481

Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILIS 499
           +E R+ +++  ++D G+  A  TI  S+   L+A +VL+F   G V+GFA T+G++  + 
Sbjct: 482 DEVRQGRTLKTAVDEGWKHARRTILVSDAVNLVAAIVLYFLAVGGVQGFAFTLGVTTCVD 541

Query: 500 MFTAISIVRAMMIFIIRYKKM 520
           +   I     +M +IIR++  
Sbjct: 542 LAIIIFFTHPLMEWIIRFRFF 562



 Score =  103 bits (256), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 26/202 (12%), Positives = 74/202 (36%), Gaps = 6/202 (2%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                     +     +    T+Q+ + +   +  E +R G++  +I    +++Y+  ++
Sbjct: 362 NQNQANTLANQLSFGSLPLSFTVQSEQQISATLGTEQLRNGLIAGLIGFALIILYLAWQY 421

Query: 689 K---WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +          +              A  G   +L  VA ++  IG +V+  ++ ++R+R
Sbjct: 422 RGLAVVAVASLVVAAAGTYLVIAALSATMGYRLSLAGVAGLIISIGITVDSFIIYFERVR 481

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
             ++      + +  +D+         + +     ++ + +       +  FA  +    
Sbjct: 482 DEVRQ---GRTLKTAVDEGWKHARRTILVSDAVNLVAAIVLYFLAVGGVQGFAFTLGVTT 538

Query: 806 VVAASSSIFIAAPILLFIYDWR 827
            V  +  IF   P++ +I  +R
Sbjct: 539 CVDLAIIIFFTHPLMEWIIRFR 560


>gi|153808889|ref|ZP_01961557.1| hypothetical protein BACCAC_03190 [Bacteroides caccae ATCC 43185]
 gi|149128715|gb|EDM19933.1| hypothetical protein BACCAC_03190 [Bacteroides caccae ATCC 43185]
          Length = 1041

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 77/678 (11%), Positives = 188/678 (27%), Gaps = 51/678 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE- 62
           N  +V+  + +  I       N    + +D FP       +           ++ E +  
Sbjct: 12  NRLVVLCAAFLLLIAGTYTAMN----TEVDVFPDLNAPTVV-----------IMTEANGM 56

Query: 63  -DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +   +          S     + + + F            V+  L  
Sbjct: 57  AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLAV 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+  L V+  K  L   +     +++     D      ++           ++  +    
Sbjct: 117 VSESLPVNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGVA 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       + +   + DP R+R    +  ++       N +  G +              
Sbjct: 175 QVAVLGGDIKEYQIQLDPERMRHYSVSMGEIMAVTQDMNLNANGGVLYEFGNEYIVRGVL 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+    +               V                   IG     +    
Sbjct: 235 STPKVEELGKAVVKTVNTFPVTLEDIADVK------------------IGPKAPKLGTAS 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
               P +   +    A  +   T +    L  + +     +K++    R       S   
Sbjct: 277 ERGKPAVLMTVTKQPATSTLELTDKLEASLKDLQKNLPADVKVSTDIFRQSRFIESSIGN 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K +       V+IVLF+ +   +  +++  ++ +++++++  L  +G T+   S+ G+ 
Sbjct: 337 VKKSLFEGGIFVVIVLFLFLANVRTTVISLVTLPISLLVSILTLHYMGLTINTMSLGGMA 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALIA 473
           + IG  VD  I+  E + +  R+N+    +        +          I +S +  +++
Sbjct: 397 IAIGSLVDDAIVDVENVYKRLRENRQKPEAERLSTLEVVFNASKEVRMPILNSTLIIVVS 456

Query: 474 TVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDINP 527
            V LFF  G   R      I   +++  S   A+++   +  ++    +  K        
Sbjct: 457 FVPLFFLSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGSNKTNKELKESFVA 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                +    +       R        LF +                 +G   + + +  
Sbjct: 517 RWMKGIYGKALTWVLAHKRVTLGSTIGLFVVALGVFFTLGRSFLPSFNEGSFTINISSLP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + L          +   ++            R +            +E   +       
Sbjct: 577 GISLEESNKMGHRAEELLLTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRPRN 636

Query: 648 LSTIQNTEIVGPKISREL 665
               +  E +G      +
Sbjct: 637 ELVAEVREKLGTITGANI 654



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 85/266 (31%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      D+ +     +     +                         +  + 
Sbjct: 248 KTVNTFPVTLEDIADVKIGPKAPKLGTASERGKPAVLMTVTKQPATSTLELTDKLEASLK 307

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         + 
Sbjct: 308 DLQKNLPADVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTVI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLY 751
           ++ TL + +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +  
Sbjct: 365 SLVTLPISLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRQKP 424

Query: 752 T-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +S  +++  +  E     + +++   +S +P+    G    ++    I     +  
Sbjct: 425 EAERLSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGIAFIVALFA 484

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N  +
Sbjct: 485 STVVALTLTPVLCSYLLGSNKTNKEL 510



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 98/263 (37%), Gaps = 11/263 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++  + N  VD +  R    +     +S    +      V+ +     +VA  
Sbjct: 766  VKDDARDEMEKIRNLMVDTNDGRKVPLNYVAEVVSAMGPNTINRENVKRKIVISANVADR 825

Query: 633  RVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +  +V      I     +        G +   E      + +      ++I++ +  ++
Sbjct: 826  DLRSVVNDIQKRIDTSIQLPEGYHIEYGGQFESEQAASRTLALTSFISIVVIFLLLYNEF 885

Query: 691  YFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +  L L +    G FAL     E ++ A+   ++L G +  + +++      N
Sbjct: 886  RSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHY--N 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAF 803
                   ++  D + +   + L   + T++++ ++++P+A+     G+ I S  A  +  
Sbjct: 944  HLQKEEGLNVYDSVMQGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDW 826
            G++ +   + FI   + L ++  
Sbjct: 1004 GLLTSTFLNGFIVPIVYLMMHRR 1026


>gi|320654349|gb|EFX22396.1| Cation efflux system protein cusA [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
          Length = 1047

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 153/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKIQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVVGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITNASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|126666271|ref|ZP_01737250.1| Co/Zn/Cd efflux system membrane component [Marinobacter sp. ELB17]
 gi|126629072|gb|EAZ99690.1| Co/Zn/Cd efflux system membrane component [Marinobacter sp. ELB17]
          Length = 1040

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 71/592 (11%), Positives = 161/592 (27%), Gaps = 41/592 (6%)

Query: 3   NNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            N +LV+L   +I  +GL       L ++ +D  P       I                 
Sbjct: 11  RNRFLVLLASLLISGLGLYS-----LSKTPVDALPDLSDVQVI---------IKTSFPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F +         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLSVPGAETVRGYSFFGDSYVYVIFDEDTDMYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    +  L    T      +          +   +           ++       
Sbjct: 117 VAPNLPDSARPQLGPDATGVGWVYLY-ALVDRTGQNDLSQLRSLQDWFLKYELQTVPGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q   +  P +LR L    + +       N      +  +           
Sbjct: 176 EVAALGGMVKQYQVKVSPEKLRALGIPLSLIQTAIQQGNQEVGASVIEMAEAEYMVRTSG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +E + ++                   V+ +  D  G     +        P        
Sbjct: 236 YIESREDL------------------MVIPLGLDVNGTPILLKDVASVEVGPQMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I   +   +   TI         L++        +      G    +   
Sbjct: 278 LNGEGETVGGIVVMRFGENAQETINGVKAKLVELQSSLPDGVEVVTVYDRSGLIERAVDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  S+ + +++   ++   G    + S+ GI 
Sbjct: 338 LFFKLLEEFLVVGLVCIVFLFHVRSSLVAIVSLPVGILMAFTVMYWQGINANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           + IG  +D  I++ E + +   +      + +  +    S     +F S +   ++ V +
Sbjct: 398 IAIGAMIDGAIVMIENMHKHMERTPLTPENRWEIVARSASEVGPALFFSLVIITVSFVPV 457

Query: 478 F---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G      A T   ++  S F A+++V  +M + IR K +              
Sbjct: 458 FALEAQEGRMFAPLAFTKTYAMAASAFLAVTLVPVLMGYFIRGKVLPEHKNPLNRVLVGA 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              +    +R     V  ++L     +      G  +      G  + +   
Sbjct: 518 YMPVLKLVLRFPMATVLAALLVLAVGLWPATKIGSEFIPPLDEGDLMYMPTT 569



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 88/288 (30%), Gaps = 15/288 (5%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                 +          Y    +  + + +  +      +++          +     + 
Sbjct: 219 ASVIEMAEAEYMVRTSGYIESREDLMVIPLGLDVNGTPILLKDVASVEVGPQMRRGIAEL 278

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                              +      K     +  S     E+V       LI + +  +
Sbjct: 279 NGEGETVGGIVVMRFGENAQETINGVKAKLVELQSSLPDGVEVVTVYDRSGLIERAVDNL 338

Query: 674 II-----SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
                    +  L+ I   F    +L AI +L + I          GI  N+ ++  +  
Sbjct: 339 FFKLLEEFLVVGLVCIVFLFHVRSSLVAIVSLPVGILMAFTVMYWQGINANIMSLGGIAI 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISV 783
            IG  ++  +V+     +NM  +            +++ +S +E      ++ +   +S 
Sbjct: 399 AIGAMIDGAIVMI----ENMHKHMERTPLTPENRWEIVARSASEVGPALFFSLVIITVSF 454

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +P+          FA P+AF    A ++S F+A  ++  +  +  +  
Sbjct: 455 VPVFALEAQEGRMFA-PLAFTKTYAMAASAFLAVTLVPVLMGYFIRGK 501



 Score = 45.1 bits (104), Expect = 0.045,   Method: Composition-based stats.
 Identities = 34/261 (13%), Positives = 84/261 (32%), Gaps = 18/261 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   + + + L+ V           I  +N        V ++     +  +  +  +  
Sbjct: 780  PIVTASGQRIALADVADIRIEDGPPAIKSENARLNGWSFVDIEGVDVGTYVEQAMAVVQA 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT- 698
            +                   +   +L       V ++   ++I +++ F+ +  +G I  
Sbjct: 840  ELDLPAGYSIAWSGQYEYMLRAKEKLT----YVVPLTLAIIIILLFLNFRSFAEVGIIMG 895

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR----------KNM 748
            TL   +   +    L G  F++      + L G +V   V++   +           +  
Sbjct: 896  TLPFAMIGAVWLMYLLGYNFSVAVGVGFIALAGVAVEIGVIMLVYLNQSYQTMLATCEQK 955

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             L     + R  +       +   + T+ A    ++P+ V    G  V+G  A PM  G+
Sbjct: 956  GLTPRRETLRHAVLHGAGMRVRPVMMTAAAIIGGLVPIMVGTGTGSEVMGRIAAPMVGGM 1015

Query: 806  VVAASSSIFIAAPILLFIYDW 826
            + A   ++ +   +       
Sbjct: 1016 ITAVILALLVIPVLFYLWRRK 1036


>gi|332703135|ref|ZP_08423223.1| acriflavin resistance protein [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332553284|gb|EGJ50328.1| acriflavin resistance protein [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 1049

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 69/579 (11%), Positives = 155/579 (26%), Gaps = 27/579 (4%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                E      +   + +  +     L              + ITL FA S   ++   
Sbjct: 47  VTTTYEGVAPVDMEKLVTIPLERKLKGLDGLEEITSMSGDGLSSITLEFAPSVDIDDALQ 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           KV   +      L  D   + LV         ++            +++      Q  D+
Sbjct: 107 KVRDKVDQAKGDLPDDLDDDPLVKEMNFSDFPIIRVVLSGPFS---LKRLKTFAEQFEDR 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
                  +       +  ++  E D  RL+ L    + ++                    
Sbjct: 164 FEAIPGVLDAEILGGLDREIHVEFDLDRLQGLRVPVSSVTAAL----------------- 206

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
               G    +       G          D K    +  I       +  +      I   
Sbjct: 207 ---SGGNVNMPGGSVDIGDAKYLVRVPADFKHPSEINSIVAFVKDGKPIYLRDVARIEDS 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                    +            ++  +    ++    + A +R    P  +         
Sbjct: 264 YKDPTTISRINGQDAVTIAIKKRSGENIIDIVDETHRIIADMRQQLPPSLIIDTTGDQAR 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                    +        LVL+V+F  +       VA  SI L++++T A+L   G TL 
Sbjct: 324 DIRLMVKDLENNILTGLLLVLVVVFAFIGGRSAVFVAL-SIPLSMLITFAMLQAFGITLN 382

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           +  +  + L +G+ VD+ I++ E +    ++  +   +  +        +  S +T + A
Sbjct: 383 MVVLFSLTLALGMLVDNGIVIVENVYRHMQEGMTRMEAARVAVDEVAWPVITSTLTTVGA 442

Query: 474 TVVLFFFGGGAVRGFAI---TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + + F+ G      +    T+ ++++ S+F A+ +   +       K            
Sbjct: 443 FIPMIFWPGIMGEFMSFLPKTVIIALMASLFVALVVNPVLSARFQTIKVGDRHPDEIDEA 502

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                       +R         I  S   +         +G   +    +         
Sbjct: 503 NLGRVLRFYRAMLRWALRHRLAVIGLSFAMLVGSAVAFGMFGKGVEFFPDIEPKQATVTI 562

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            + V +NL++        +    +               
Sbjct: 563 DAPVGTNLDASDRLVRQVERIIADGGHKDIQSVISTVGD 601



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/126 (16%), Positives = 58/126 (46%), Gaps = 4/126 (3%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             A+    ++ L +  T      FGI  N+  + ++   +G  V++ +V+ + +    + 
Sbjct: 354 RSAVFVALSIPLSMLITFAMLQAFGITLNMVVLFSLTLALGMLVDNGIVIVENV---YRH 410

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
               ++  +    +++E     + +++    + +PM  W G ++G F   +   +++A  
Sbjct: 411 MQEGMTRMEAARVAVDEVAWPVITSTLTTVGAFIPMIFWPG-IMGEFMSFLPKTVIIALM 469

Query: 811 SSIFIA 816
           +S+F+A
Sbjct: 470 ASLFVA 475



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 78/247 (31%), Gaps = 30/247 (12%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            G  N     +     S    R+   V  +IT  +                +E   K    
Sbjct: 790  GAINHKDLKRVVTVSSDVSGRLANEVIAEITAKLSHVEFPRGYSWQFTGEQEEQAKAQAF 849

Query: 673  VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN------LTAVAAV 726
            +  + IA + +I++     F   A+  +IL            G+         +     V
Sbjct: 850  LGKAFIAAVFFIFLVLVTQFNSAAVPFIILTSVILSFIGVFLGLLVTGRPFGVIMTGIGV 909

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            ++L G  VN+ +V+ D   + +K     +   + +  +        + T++   + +LPM
Sbjct: 910  ISLAGVVVNNAIVLID-YFEQLKA--RGMEATEALITTGLTRFRPVLLTAITTLLGLLPM 966

Query: 787  AV---WGGSVIG------------SFAIPMAFGIVVAASSSIFIAAPI------LLFIYD 825
            A    +                  S A+ + FG+ VA   ++ +   +            
Sbjct: 967  ATGVSFDFIGFRLEVGSESSMWWGSMAVAVIFGLGVATMLTLIVVPVLCSLRESAAAWAT 1026

Query: 826  WRAKNAR 832
             R   +R
Sbjct: 1027 RREARSR 1033


>gi|254712590|ref|ZP_05174401.1| probable multidrug efflux transporter protein, AcrB/AcrD/AcrF
           family protein [Brucella ceti M644/93/1]
 gi|261320285|ref|ZP_05959482.1| AcrB/AcrD/AcrF family multidrug efflux protein [Brucella ceti
           M644/93/1]
 gi|261292975|gb|EEX96471.1| AcrB/AcrD/AcrF family multidrug efflux protein [Brucella ceti
           M644/93/1]
          Length = 461

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/485 (12%), Positives = 126/485 (25%), Gaps = 35/485 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     ++L       G+         Q  +   P A     I+            L   
Sbjct: 9   RRPVATILLVIGGLIGGIAA-----YNQLPVAALPEADFPT-IN--------VSAQLAGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D +   +     +    +                ITL F   R  +  A  V   +  
Sbjct: 55  SPDTMASSVATPLIKQFETIAGIDTISARSSLGNTSITLQFDLKRNIDAAAADVQAAIMR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  +         T    + V+             +            +       
Sbjct: 115 AQRRLPDNLTTPPSYRKTNPADAPVVILALTGDGAR-LTQMDDIAQNVISPALSTISGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L        +  E DP +L     + + +       NN         R          
Sbjct: 174 QALVYGSKTYAVRVEVDPDKLDSRNLSLSGLGETIAAANNQTPVGTLQNR---------- 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                            A           ++     G R         +   +  V    
Sbjct: 224 ----------SQALTVDAQTQRTNAGEFRNLIVAGSGNRIVRLSDVATVLDSVDNVNQDS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L            +   +    ++        + A         V      +   + + 
Sbjct: 274 WLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHIAVVNDASVSIRAAVAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +   AI   LV++V+F+ +      ++   ++ L+++ T A +   G ++   S+  + 
Sbjct: 334 VQRMLAITVCLVVLVIFLFLGQFWATMIPGLAVPLSLVATFAAMYACGFSIDNISLLALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +GL VD  I++ E I     +  + F +  +G      TI   +++ +   + +   G
Sbjct: 394 LAVGLVVDDAIVMLENIVRHVEEGLAPFQAAIVGSQEVTGTIISMSLSLVAVFLPILLMG 453

Query: 482 GGAVR 486
           G   R
Sbjct: 454 GIVGR 458



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/201 (13%), Positives = 71/201 (35%), Gaps = 9/201 (4%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
                L   D   Q+   +    + L  Q         V++ ++ K+ EI          
Sbjct: 258 DVATVLDSVDNVNQDSWLDGKQTIALAVQRQPGSNTVAVVDAIRAKLPEIEAALPAHMHI 317

Query: 656 IVGPKISRELI-----RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V    S  +       + ++ + +  + ++I++    +++  +     + L +  T   
Sbjct: 318 AVVNDASVSIRAAVADVQRMLAITVCLVVLVIFL-FLGQFWATMIPGLAVPLSLVATFAA 376

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
               G   +  ++ A+   +G  V+D +V+ + +   ++     ++          E  G
Sbjct: 377 MYACGFSIDNISLLALTLAVGLVVDDAIVMLENI---VRHVEEGLAPFQAAIVGSQEVTG 433

Query: 771 RSVYTSMAAFISVLPMAVWGG 791
             +  S++     LP+ + GG
Sbjct: 434 TIISMSLSLVAVFLPILLMGG 454


>gi|120600704|ref|YP_965278.1| CzcA family heavy metal efflux protein [Shewanella sp. W3-18-1]
 gi|120560797|gb|ABM26724.1| heavy metal efflux pump, CzcA family [Shewanella sp. W3-18-1]
          Length = 1049

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/598 (12%), Positives = 169/598 (28%), Gaps = 45/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++I+  MI   G+       L ++ LD  P       I                 
Sbjct: 11  RQRLMVLIIAIMITVWGV-----QELRKTPLDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APKLVEEQVTYPLSTAMLAVPGAKTVRGYSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++S+L    + +L    +                     +           ++       
Sbjct: 117 ISSRLPQGVQPSLGPDASGVGWVFEY-ALVDRSGSLDLSQLKSLQDWYLKLELQSVAGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +        +P ++       A +       N+   G +  +         + 
Sbjct: 176 EVATVGGMEQTYQIVLEPDKMAIYKLDIASIKDAIEKSNSEAGGSVIEMAEAEYMVRAKG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +   I L   + +      K V  +       R   E+  +             
Sbjct: 236 YRQTLEDFREIPLGITSPSGTGLLLKDVATVRKGPASRRGIAELDGE------------- 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +   TI+        L+AG       I         L S   
Sbjct: 283 ----GEVVGGIIVMRYGENALSTIDAVKAKLEELKAGLPDGVEIIPTYDRSQLILNSVDN 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI 
Sbjct: 339 LFSKVVEEMLVVGLVCLLFLLHARSTLVAIITLPLSILIAFIVMNKMGVNANIMSLGGIA 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDSNITAL 471
           + IG  VD  I++ E + +   +  +           +  +          +F S I   
Sbjct: 399 IAIGAVVDGAIVMIENLHKHLEQFHTEHNREPDTKEHWRIVTEASIEVGPALFFSLIIIT 458

Query: 472 IATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ V +F      G      A T   ++  S   AI++V  +M + IR K          
Sbjct: 459 LSFVPVFALEAQEGRLFAPLAYTKSFAMAASALLAITLVPVLMGYFIRGKIPSEHKNPIS 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                +        +R     + ++++  + +   +   G  +  + + G  L +   
Sbjct: 519 RVLIALYKPSLNLVLRFPKITLALALIALVSAWYPMTRMGSEFMPELEEGDLLYMPTA 576



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 81/233 (34%), Gaps = 13/233 (5%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-- 667
                E   L+   +   +  +    +   K+ +T  + +    +    G     + +   
Sbjct: 812  MLTSENGRLISWVFIDIEGTSIGEYITTAKQALTAELKVPPRYSYTFAGQYEYMQRVDAK 871

Query: 668  -KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             K ++ + +  I +L+ +        ++  + +L   +  +     L     ++     +
Sbjct: 872  LKQVIPMALGVIFILLMMTFGSTLQASII-MLSLPFALVGSTWLLYLLDYNISVAVAVGM 930

Query: 727  LTLIGYSVNDKVVVY------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            + L G +    V++        + R+    Y T    ++ + +     +     T    F
Sbjct: 931  IALAGVAAEFGVIMLIYLNNAIKHRQEKNNYHTVTDLKEALIEGAVMRIRPKAMTVATIF 990

Query: 781  ISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +LP+      G  V+   A PM  G+V A   S+F+   + L IY  + K 
Sbjct: 991  FGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLIYSRQLKK 1043



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 85/227 (37%), Gaps = 13/227 (5%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +       L  K +  
Sbjct: 287 GGIIVMRYGENALSTIDAVKAKLEELKAGLPDGVEIIPTYDRSQLILNSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L AI TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAIITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNMK----LYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K+++     +      ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEQFHTEHNREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           P+          FA P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 463 PVFALEAQEGRLFA-PLAYTKSFAMAASALLAITLVPVLMGYFIRGK 508


>gi|238789142|ref|ZP_04632930.1| Heavy metal efflux pump, CzcA family [Yersinia frederiksenii ATCC
           33641]
 gi|238722674|gb|EEQ14326.1| Heavy metal efflux pump, CzcA family [Yersinia frederiksenii ATCC
           33641]
          Length = 1029

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/528 (11%), Positives = 139/528 (26%), Gaps = 48/528 (9%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           +++   M+   G+       L Q+ LD  P       I           +         V
Sbjct: 2   VLLGAVMMAAWGIWS-----LQQTPLDALPDLSDTQVI---------IRVSYPGKAPQVV 47

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +          +                + + F D         +V  +L  V S L
Sbjct: 48  EDQVTYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFDDGTDPYWARSRVLEYLSQVQSTL 107

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             + K +L    T                     +           ++    +  +    
Sbjct: 108 PAEAKASLGPDATGVGWIYEY-ALIDRTGKHSLADLRALQDWTLKFELKTVPNVSEVASV 166

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             ++ Q     DP R+R L  +  +++      N    G +  +            ++  
Sbjct: 167 GGMVRQYQVVLDPERMRALNLSHQQIASAIRDSNQEAGGSVLEMGAAEYMVRASGYLKTL 226

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +                       +     G              P        +    
Sbjct: 227 ED-------------------FRNIVITARDGIPILLSDVATVRMGPEMRRGVAELNGEG 267

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   I   +   +   TI         ++         +           +        
Sbjct: 268 EVAGGIIVMRYGKNALETINGVKEKLQQIQRSLPAGVEIVPVYDRSQLITQAIDSLSFKL 327

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V ++  + + + +  LVA  ++ L ++    ++   G    + S+ GI + IG 
Sbjct: 328 LEEFLVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAIGA 387

Query: 427 AVDSNILV-------NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            VD+ I++        E+ R ++     V         +A   +  +   +L+   + F 
Sbjct: 388 MVDAAIVMIENMHKVLEQWRRDHPGQTPVSQDYWRISEQAAIEVGPALFCSLLIITLSFI 447

Query: 480 F-------GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
                    G      A T   ++ +S   AI++V  +M + IR K  
Sbjct: 448 PVFTLQAQEGRMFSPLAFTKTYAMAVSAGLAITLVPVLMGYFIRGKIP 495



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 87/259 (33%), Gaps = 16/259 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   +   V LS +     +     +  +N        V L+ +   S        + +
Sbjct: 772  PVVTASGGQVALSELADIKVAGGPPMLKSENARLSDWVYVDLRGRDLKSAVTDMQQAVAQ 831

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +         +         + + +L     + + ++ + + + +++ F       A+  
Sbjct: 832  QVKLPEGVSLSWSGQFEYLERATAKLK----IVLPVTLLIIFVLLYVTFSSVRD-AALIM 886

Query: 700  LILDITKTLGFFALFGIEFNLTAVAA--VLTLIGYSVNDKVVVYDRMRKNMKLYTT---- 753
              L      G + L+G+ +N +  AA   + L G +    V++   + + +K +      
Sbjct: 887  ATLPFALIGGVWLLYGLGYNFSVAAAVGFIALAGVAAEFGVIMVLYLNQALKKHQRPGIA 946

Query: 754  --SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVA 808
              +      I +     +     T       +LP+   GG    V+   A PM  G+V A
Sbjct: 947  MTASEISAAIHEGAVLRVRPKAMTVATIMAGLLPIMWGGGTGSEVMQRIAAPMIGGMVSA 1006

Query: 809  ASSSIFIAAPILLFIYDWR 827
               S+ +   + + ++   
Sbjct: 1007 PLLSMLVIPAVYMLLHKKE 1025



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/228 (13%), Positives = 77/228 (33%), Gaps = 9/228 (3%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 ++ ++Y          V E +++    +     I         I++ +      
Sbjct: 267 GEVAGGIIVMRYGKNALETINGVKEKLQQIQRSLPAGVEIVPVYDRSQLITQAIDSLSFK 326

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    +  +I     F +  AL AI TL L I          G+  N+ ++  +   IG
Sbjct: 327 LLEEFLVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAIG 386

Query: 732 YSVNDKVVV---YDRMRKNMKLYTTSISFRD-----LIDKSINETLGRSVYTSMAAFISV 783
             V+  +V+     ++ +  +      +        + +++  E       + +   +S 
Sbjct: 387 AMVDAAIVMIENMHKVLEQWRRDHPGQTPVSQDYWRISEQAAIEVGPALFCSLLIITLSF 446

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +P+          F+ P+AF    A + S  +A  ++  +  +  +  
Sbjct: 447 IPVFTLQAQEGRMFS-PLAFTKTYAMAVSAGLAITLVPVLMGYFIRGK 493


>gi|217970478|ref|YP_002355712.1| acriflavin resistance protein [Thauera sp. MZ1T]
 gi|217507805|gb|ACK54816.1| acriflavin resistance protein [Thauera sp. MZ1T]
          Length = 1102

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 70/524 (13%), Positives = 163/524 (31%), Gaps = 27/524 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEVD 61
            +   ++    +  +G++  L     Q+  +  P   +P   + +GL             
Sbjct: 18  TSKLTLVFIIAVALMGVVAVL-----QTPREENPQIIVPAAAVVVGL----------PGA 62

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    + + S L        + R  Q  + + F     KE    K+   +  
Sbjct: 63  SAAEVESLVVTPLEGILSELPGVDHIESTSRNSQGIVQVQFKVGESKEQSLVKLYDRVMA 122

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  D    L+ +    ++ IV       +   +A+ +  E   +  +++  +E+  
Sbjct: 123 SRAWLPADATTPLVQSVDADDVPIVTFTLASSKYDDYALNRMAE---RMAERLRSTENVS 179

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     ++  E DP RL+    T  +                  ++        Q 
Sbjct: 180 VVSLRGGQHREITIELDPDRLQAYGVTLGQARAA-----FPTSNLTLPLQPTVRDGQIQA 234

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +  D    S   +         K    V D++    G              P        
Sbjct: 235 IKLDAAYTSAEDVRNQLIAVRDKRPVYVRDVATVTDGPPSEPATASRLSFGPGYPRFGTA 294

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             T         + K   +              ++A  +P  + +V  RN G        
Sbjct: 295 DATDLPAVTIAVAKKKGTNAVVVANAVIDRMQRMQATFVPQDIQVVVTRNDGQKADDAVN 354

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  +A + + ++ ++ L  +  L+   ++ L + +TLA   L G T+   ++  ++
Sbjct: 355 LLLEHLAIALVTVGLVLILFLGWREALIVMITVPLIMGITLAANLLGGVTINRVTLFALI 414

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF---SRAYSTIFDSNITALIATVVLF 478
           L +GL VD+ I+V E I       +             +   +    +    ++  + L 
Sbjct: 415 LALGLLVDAAIVVIENIHRHYASRKPKADKEAETVLATNEIGNATNLATFAVMLVFITLL 474

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
               G  R +   + +++ ++M  +I +   ++ +       + 
Sbjct: 475 LALTGMPRQYFFPVAVTVPVAMAASIVVAYIVVPWASNRWLHRH 518



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 65/155 (41%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + + + + +   W  AL  + T+ L +  TL    L G+  N   + A++  +G 
Sbjct: 360 LAIALVTVGLVLILFLGWREALIVMITVPLIMGITLAANLLGGVTINRVTLFALILALGL 419

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+  +VV + + ++                + NE    +   + A  +  + + +    
Sbjct: 420 LVDAAIVVIENIHRHYASRKPKADKEAETVLATNEIGNATNLATFAVMLVFITLLLALTG 479

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +   +  P+A  + VA ++SI +A  ++ +  +  
Sbjct: 480 MPRQYFFPVAVTVPVAMAASIVVAYIVVPWASNRW 514



 Score = 74.7 bits (181), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 68/150 (45%), Gaps = 12/150 (8%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
               +     +   L A++ + L I        L G++F+ T++  ++ L G  + + +++
Sbjct: 950  FALVAYYRSFIVPLVAMSAVPLGIIGIFPGHWLVGMDFSATSMVGIIALAGVVIRNSLLI 1009

Query: 741  YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSF 797
             D ++ N++     +  R+ + ++    L   + T +A       M    V+GG      
Sbjct: 1010 IDFIQDNIR---HGMPLREAVRQAGAVRLRPILLTMLAIIFGSAVMVTDPVFGG-----L 1061

Query: 798  AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            A+ + FG +V+ + ++F+  P+L  ++  R
Sbjct: 1062 AVSLIFGTLVSTALTVFVV-PLLYELHAKR 1090


>gi|213425188|ref|ZP_03357938.1| aminoglycoside/multidrug efflux system [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 276

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 63/252 (25%), Gaps = 24/252 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P   P              ++ +  + 
Sbjct: 8   RPIFAWVLAILLCLTGALAIF-----SLPVEQYPDLAPP-------------NVRITANY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S    Q  ITLSF      +    +V  
Sbjct: 50  PGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDEAVQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL    +   +      + +I+              + +  +     D +   
Sbjct: 110 QLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVASNIQDPLSRV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                               DP++L     TT  ++      N        G     D  
Sbjct: 170 NGVGDIDAYGSQYSM-RIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQLGGTPSVDKQ 228

Query: 238 GNQYLVEDKVEI 249
                +  +  +
Sbjct: 229 ALNATINAQSLL 240


>gi|89899225|ref|YP_521696.1| heavy metal efflux pump CzcA [Rhodoferax ferrireducens T118]
 gi|89343962|gb|ABD68165.1| Heavy metal efflux pump CzcA [Rhodoferax ferrireducens T118]
          Length = 1043

 Score =  125 bits (314), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 71/557 (12%), Positives = 155/557 (27%), Gaps = 44/557 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV+L ++   +G + A+     ++ +D  P       I          +       
Sbjct: 11  RNRFLVLLATLFIVVGGIFAVL----RTPIDALPDLSDVQVI---------VYTEYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          + K  +         + + + F D         +V  +L   
Sbjct: 58  PQVVEDQVTYPLTTSMLSVPKSKVVRGFSFFGASFVYIIFEDGTDIYWARSRVLEYLNFA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + ++       +    T        +    D       E           Q+  +    +
Sbjct: 118 SGRMPKGITPQIGPDATGVGWVYQYALLAKD---KTLAELRSIQDWYVRYQLTKAHGVAE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  +       DP +LR       K++      N    G    +         +  
Sbjct: 175 VASVGGFVQTYQVTVDPVKLRAYGIPLMKVAQVIRDSNRDVGGRAVEMAETEYMVRGKGY 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +  K +I                    + +   + G              P        +
Sbjct: 235 LRGKGDIE-------------------LLVVKSDKGTPVLIRDIARVELTPDERRGLTEL 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    I       A +  G                   +    
Sbjct: 276 NGEGEVVSGIAMSRYGQNALEVISNLKAKIAEIGPGLPAGVTVQTVYDRSELINRAIDTL 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T    + +V +V  + +++ +  LVA   + + +++    + LLG +  L S+ GI +
Sbjct: 336 KRTLLEESLIVAVVCVVFLMHVRSALVAILMLPVGILMAFIAMRLLGMSSNLMSLGGIAI 395

Query: 423 GIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IG  +D+ I++ E   +       +      F ++          +F S +   ++ + 
Sbjct: 396 AIGAMIDAAIVMIENAHKHLERLPEDHTKLQRFEAMLEACKEVGPALFFSLLIITVSFLP 455

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   S+  +   +I++V  +M+  IR K M             
Sbjct: 456 VFALEGQEGRLFSPLAYTKTFSMASAALLSITLVPVLMLLFIRGKVMPEARNPVNRALIW 515

Query: 534 IPDCIAIQFMRARFWGV 550
               I    MR +   +
Sbjct: 516 AYRPIIAGVMRWKKLTI 532



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 64/162 (39%), Gaps = 10/162 (6%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + ++  + +R     AL AI  L + I        L G+  NL ++  +   IG
Sbjct: 343 SLIVAVVCVVFLMHVR----SALVAILMLPVGILMAFIAMRLLGMSSNLMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMR---KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             ++  +V+ +      + +    T +   + + ++  E      ++ +   +S LP+  
Sbjct: 399 AMIDAAIVMIENAHKHLERLPEDHTKLQRFEAMLEACKEVGPALFFSLLIITVSFLPVFA 458

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             G     F   A    F +  AA  SI +   ++L     +
Sbjct: 459 LEGQEGRLFSPLAYTKTFSMASAALLSITLVPVLMLLFIRGK 500


>gi|332300191|ref|YP_004442112.1| acriflavin resistance protein [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177254|gb|AEE12944.1| acriflavin resistance protein [Porphyromonas asaccharolytica DSM
           20707]
          Length = 1035

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/694 (9%), Positives = 190/694 (27%), Gaps = 51/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   ++ +L+ ++  +G L            +  P   P               ++    
Sbjct: 9   QRPIYVTVLFILLTVLGYLS-----FKSLSAELMPKFTPPLL---------NVQIIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   L   ++E+ S ++          +  + I +SF      +    +    L  
Sbjct: 55  SPSEVENSLTQKAEEVLSSMEGIDQMQSYSFEGMSMIMVSFDFGTDIDKAMTEAQNRLAA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  +     +   +  E  I++      +    + E    + ++ + ++   +   
Sbjct: 115 KRAELPREVFAPRISKVSVDEKPILIL---SARADIGSTELYDLVDKRIVPELSHIKGIA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    D  R++    T   +       N             + +     
Sbjct: 172 NVDLVGGVEREIQINLDKGRMQDFGITPMMVQGAIRASNLDFPTGYLQSDLTQMAVRLSG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E+                      +    +            +   +   +   
Sbjct: 232 KITSIEEL--------------------RRLILRNVSGTPIRLEDVAEVVDGVKDPVKMG 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +            ++  +     E     +  +    +       V +        + S
Sbjct: 272 RVNGQEAILLNILKQSDANALQVSEAVGKQIQNLEEQYASEGLKVEVAQDTTTFTRNAIS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +V+ + +   +  L+    + +++I +   + + G TL + S+  +
Sbjct: 332 SVLTDLLLAILLVSLVILLFLHNVRNALIVMVVVPVSLISSFIGMRIFGFTLNMMSLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IG+ VD  I+V E +       ++   +     +    T+    +  ++  + + F 
Sbjct: 392 SLVIGVLVDDAIVVIENVYRHMEMGKNRVRATWDALNEIGLTVVSVTLVLVVVFLPIIFT 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR----------YKKMKSIDINP 527
                  +R F   + +SIL S+  A+++V  +   +             + +   +   
Sbjct: 452 NSLVSDILRQFCGVIVISILFSLLAALTLVPLLTSRLGNIQPLRDDRPLGRMLTGFERGI 511

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 I                 + +L +   +             +    +  +    
Sbjct: 512 SRFANGISSLTRWGLSHRWALAGIVVVLMAAVLMLFPLGFINFEFQPYMDRQECIIQLEM 571

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P D+S+  SN    +  +   Q  + EK   +           +               P
Sbjct: 572 PKDISMAESNQLVRKAENWLMQRPEVEKVVTMVGLTSDNSQSNKGSPYLAELDVKLRKTP 631

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             T      +   ++  L+   +    +S    +
Sbjct: 632 EGTEAYVARIRKPLTDYLVDARVNVYSVSMTGTV 665



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 79/204 (38%), Gaps = 7/204 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWY 691
             + +    +++E      +Q       K   + +      +++S + + L  + +   W 
Sbjct: 824  AIAKQFMSQLSEEQMPQGVQIQTAGDMKKMSDSMSVLTTAILLSLLFIYLALVLLYNNWT 883

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  +  + L I   L   A+     ++ A+  ++ LIG    + +++ D   +     
Sbjct: 884  DPLVVMIAIPLSIVGALLALAMSNTAMSIYAMLGMVMLIGLVAKNAILLVDFANE---AR 940

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +   + + +++       + T+++  I +LP+A+    G  +    A  +  G+ ++
Sbjct: 941  GEGLPVDEALIQAVKLRTRPILMTALSTIIGMLPVALSRGSGAELRTGMAWVIIGGMALS 1000

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               ++ +   +    +  +  +A+
Sbjct: 1001 TLLTLIVVPALYKAFHARQRTSAK 1024



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 55/141 (39%), Gaps = 6/141 (4%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           AL  +  + + +  +     +FG   N+ ++ A+  +IG  V+D +VV + +    +   
Sbjct: 358 ALIVMVVVPVSLISSFIGMRIFGFTLNMMSLLALSLVIGVLVDDAIVVIENV---YRHME 414

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              +       ++NE     V  ++   +  LP+         ++  F   +   I+ + 
Sbjct: 415 MGKNRVRATWDALNEIGLTVVSVTLVLVVVFLPIIFTNSLVSDILRQFCGVIVISILFSL 474

Query: 810 SSSIFIAAPILLFIYDWRAKN 830
            +++ +   +   + + +   
Sbjct: 475 LAALTLVPLLTSRLGNIQPLR 495


>gi|299139395|ref|ZP_07032570.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
 gi|298598664|gb|EFI54827.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
          Length = 1040

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 65/516 (12%), Positives = 146/516 (28%), Gaps = 38/516 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +    I   GL+           +   P                     L   
Sbjct: 9   RRPVATTLFAVAITIAGLIA-----FQALPVSSLPQVDFATIT---------VATSLPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S     + ITL F  +R  +  A  V   +  
Sbjct: 55  SPEVMASSVATPLERQFGHIAGITQMTSSSTLSISSITLQFDLTRDVDGAARDVEAAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +   N          + ++   ++    +               ++   +   
Sbjct: 115 ARTYLPTNLPANPTYRKVNSAAAPIMV-LSLTSDTADQGAMYDTASSIIEQKLSQLQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +  + DP +L      T  ++    L N+++    F   F         
Sbjct: 174 QVQVVGSSLPAVRVDLDPQQLNSYGIGTQDVAHAISLQNSNRPKGQFSDEFTTADITAND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                       +       R         +   +  +    
Sbjct: 234 QISKAKD--------------------YAPLVVGSNNGRVVRLRDVARVFDSVQTIRSAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +        +       +   T++        +RA         +          S + 
Sbjct: 274 FVNGKPCVILLVFRLPNANVIDTVDRIKKELPSIRASIPASDQLSINTDLTTTIRASVND 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  +   LV+ V+F+ +   +  L+   ++ +++I T A++ L G T+   S+  + 
Sbjct: 334 VERTLLLSVVLVVAVVFVFLRSPRAILIPGVAVAVSLIGTFAVMYLFGYTIDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I     +      +   G      T+   +++ +   V + F G
Sbjct: 394 ISTGFVVDDAIVVMENITRFIEEGMPPMKAAFKGAQEVGFTVLSMSLSLMAVFVPILFMG 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G     FA T+  SI +SM  ++++   M  ++
Sbjct: 454 GIVGRLFHEFAFTLDTSIAVSMVISLTVTPMMCAYL 489



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 6/133 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L     + + +  T     LFG   +  ++ A+    G+ V+D +VV + +   
Sbjct: 354 RSPRAILIPGVAVAVSLIGTFAVMYLFGYTIDNLSLMALTISTGFVVDDAIVVMENI--- 410

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
            +     +       K   E     +  S++     +P+   GG V      FA  +   
Sbjct: 411 TRFIEEGMPPMKAAFKGAQEVGFTVLSMSLSLMAVFVPILFMGGIVGRLFHEFAFTLDTS 470

Query: 805 IVVAASSSIFIAA 817
           I V+   S+ +  
Sbjct: 471 IAVSMVISLTVTP 483



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 85/217 (39%), Gaps = 6/217 (2%)

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
            V + +     V+  +   ++ +    +   +T+++      +  ++ +    + +I + +
Sbjct: 810  VTISFNLASGVSLGQATALIAQMQQRVGAPATVRSQFAGTAETFQKSLSTEPLLIITALL 869

Query: 679  AMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            A+ I + + ++     +  +TTL       +    +F  E ++ ++  +  LIG    + 
Sbjct: 870  AIYIVLGVLYESLIHPITILTTLPSASVGAIFALIVFHSELDIISLIGIFLLIGIVKKNA 929

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ D             S RD I ++        + T++AA    LP+A+    G  + 
Sbjct: 930  IMMID--FALQAEREEGKSTRDSIFEACMLRFRPILMTTLAALFGALPLALGHGTGSELR 987

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                + +A G+  +   +++    I L+      +  
Sbjct: 988  RPLGVAIAGGLAFSQLLTLYTTPVIYLYFDRMSQRFK 1024


>gi|170719152|ref|YP_001784298.1| acriflavin resistance protein [Haemophilus somnus 2336]
 gi|168827281|gb|ACA32652.1| acriflavin resistance protein [Haemophilus somnus 2336]
          Length = 1038

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/464 (12%), Positives = 138/464 (29%), Gaps = 26/464 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +  F+    +E  +          S     + IT+    +         V   +  V
Sbjct: 56  ANLMQAFVTSTLEEAIAQADNIDYMSSSSAANSSIITVKMKLNTDPNGALADVLAKVNSV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L  + +  ++ ++T     I+      D++   + + +  I R    Q+   E   +
Sbjct: 116 RSRLPHNIEDPVISSSTGGT-GIMYISFYSDKL--DSSQVTDYIERVVKPQLFTIEGVAK 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L    DP ++     +   +       N           +    +     
Sbjct: 173 AQIFGAAQYALRIWLDPEKMAAQNLSALAVMSALSANNVQTAAGSADGYYTVYKNKVGTT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                ++                     ++                 +            
Sbjct: 233 TNSVKDLE--------------------NLIVYSKDDNLVRLRDIATVELNKESDSTRAT 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         A  +     E    L A ++        + +      A   S +  
Sbjct: 273 ANGADSVVLAIEPTATANPLTVAENVRPLYAQIKQNLPSSMYSDLLYDRTIAINSSINEV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +VL+V+ + +   +  L+   +I +++I  + +L L   ++ L ++  ++L
Sbjct: 333 IKTIIEATVIVLVVILLFIGSLRAILIPIITIPISLIGVIMILQLFDFSINLMTLLAMIL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E +    +  ++ F +  +G       +    I  +     +   G 
Sbjct: 393 AIGLVVDDAIVVLENVDRHIKAGETPFRAAIIGTREIAIPVISMTIALIAVYSPMALMGG 452

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
             G   + FA+T+  ++ IS   A+++   M   ++      + 
Sbjct: 453 ITGSLFKEFALTLAGAVFISGIVALTLSPMMTSKLLNNNAKPNR 496



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 81/208 (38%), Gaps = 9/208 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                +   +K+ +   +    + +  I       E+I+  I   +I  + +L++I    
Sbjct: 296 ENVRPLYAQIKQNLPSSMYSDLLYDRTIAINSSINEVIKTIIEATVIVLVVILLFIG--- 352

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  I T+ + +   +    LF    NL  + A++  IG  V+D +VV + +    
Sbjct: 353 SLRAILIPIITIPISLIGVIMILQLFDFSINLMTLLAMILAIGLVVDDAIVVLENV---D 409

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      +          E     +  ++A      PMA+ G   GS+   FA+ +A  +
Sbjct: 410 RHIKAGETPFRAAIIGTREIAIPVISMTIALIAVYSPMALMGGITGSLFKEFALTLAGAV 469

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++   ++ ++  +   + +  AK  R+
Sbjct: 470 FISGIVALTLSPMMTSKLLNNNAKPNRL 497



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 68/167 (40%), Gaps = 18/167 (10%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT------------LGFFALFGI 716
            ++  +++ + + + + I+F+     L  + ++ L ++              +    L G+
Sbjct: 848  VITFVLAVLIIFLVLAIQFESIRDPLVIMVSVPLAVSGALLVLNFLSLLTDMRILGLSGV 907

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              N+ +   ++TL+G      +++ +  ++       S    D I ++    L   + T+
Sbjct: 908  TLNIYSQVGLITLVGLITKHGILMCEVAKEEQLYLGKSR--IDAITEAARVRLRPILMTT 965

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             A    ++P+ +    G +   S AI +  G+ +    ++F+   I 
Sbjct: 966  AAMVAGLIPLLLASGAGAASRFSIAIVLVAGLSIGTLFTLFVLPVIY 1012


>gi|254373520|ref|ZP_04989007.1| hypothetical protein FTCG_01473 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151571245|gb|EDN36899.1| hypothetical protein FTCG_01473 [Francisella novicida GA99-3549]
          Length = 1037

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/529 (11%), Positives = 149/529 (28%), Gaps = 47/529 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G+            + ++P                   + +   
Sbjct: 9   RRPVLSLSISFMIIVVGIGS-----FFNLQIRQYPYIDSAT-------------ITITTS 50

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +  F+    +      K             + IT+         ++  +V  
Sbjct: 51  YPGANPSTIQAFVTRPLESSVGTSKGIDYMESESALGTSTITVYVKLGYNSNDVLSEVVQ 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V ++L  D     +          ++   +         E S  I  +   ++   
Sbjct: 111 NVNAVLNRLPQDAYSPSIKLNPADNFPSLILAFHSK--TMDTSEISAYINSELKPKLLAQ 168

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    +  R+ +   T  +++      +    G      +L  + 
Sbjct: 169 GGLSDVNIWGFKPYAMRIYPNKIRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYT- 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                      T +   ++   +   +         +       
Sbjct: 228 -------------------LNPETSMSTAQEYKNLIIKKSDNQIVRLKDIAKVELGAQDY 268

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                        A      + +    ++        ++A         V   +      
Sbjct: 269 NSSVTFDGKNAVLAGAVVSPEENPLDVVDRLVKQLPSIKASLPNGLAVDVAYNSTLYIQS 328

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +V IV+F+ +   +  +V   +I L++I +  L+S++G ++ L ++
Sbjct: 329 SIDEVLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTL 388

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I     +    F +   G     + +    +T ++    +
Sbjct: 389 LAMILAIGLVVDDAIVVLENIYRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPI 448

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G     FA ++  ++LIS   A ++   M   ++  + M S 
Sbjct: 449 GMMGGFTGQLFTEFAYSLAGAVLISGVVAYTLSPMMCSKVLNREMMSSR 497



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/331 (12%), Positives = 105/331 (31%), Gaps = 14/331 (4%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           +           I  N +           +         V          +        +
Sbjct: 174 VNIWGFKPYAMRIYPNKIRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYTLNPETS 233

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                +    +   ++  +      + +E       S   FDG+   L      P ++  
Sbjct: 234 MSTAQEYKNLIIKKSDNQIVRLKDIAKVELGAQDYNSSVTFDGKNAVLAGAVVSPEENPL 293

Query: 631 QT-----RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                  + L  +K  +   + +    N+ +       E++   +  VII +I M +++ 
Sbjct: 294 DVVDRLVKQLPSIKASLPNGLAVDVAYNSTLYIQSSIDEVLHTLLEAVIIVSIVMFLFLG 353

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +  I  + L I  +    ++ G   NL  + A++  IG  V+D +VV + + 
Sbjct: 354 ---SLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMILAIGLVVDDAIVVLENI- 409

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMA 802
              +     +       K   E     +  ++   +   P+ + GG    +   FA  +A
Sbjct: 410 --YRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMGGFTGQLFTEFAYSLA 467

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++++   +  ++  +   + +    ++R+
Sbjct: 468 GAVLISGVVAYTLSPMMCSKVLNREMMSSRL 498



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 97/291 (33%), Gaps = 17/291 (5%)

Query: 552  ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
             S                  G  +    ++  L    V LS + S     Q   ++    
Sbjct: 741  YSFQVIPQLPRNEMLTPEQLGNIYIRSDEVNNLFASEVPLSALVSFKTEGQPLTLNTFQQ 800

Query: 612  DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                     +        A   V  ++K  + E    +   +        +  +     +
Sbjct: 801  LNSSTISAVMAPGITQGQAIEYVQSVIKSMLPEGFSYNFSGSARQYIENGNTMM-----I 855

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDI---TKTLGFFALFGIE---FNLTAVA 724
                + + + + +  +F+ +  +L  + T+ + I      L      G      N+    
Sbjct: 856  AFAFAIVLIFLALSAQFESFRDSLVILVTIPMAISGALIPLYVGQYLGASWASLNIYTQL 915

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++TLIG      ++V +    N       ++  D I  S ++ L   + T  A  + V+
Sbjct: 916  GLVTLIGLISKQGIMVVE--FANHLQKHNGMNKYDAIVTSSSQRLRPILMTVSAMVVGVI 973

Query: 785  PMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+    G   I      + ++ G+V+ A  S+F+   + ++I   ++K+ +
Sbjct: 974  PLVTSSGAGAISRNCIGVVISSGLVIGAIFSLFVLPVVYMYIASDKSKSVK 1024


>gi|319428383|gb|ADV56457.1| heavy metal efflux pump, CzcA family [Shewanella putrefaciens 200]
          Length = 1049

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/598 (12%), Positives = 169/598 (28%), Gaps = 45/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++I+  MI   G+       L ++ LD  P       I                 
Sbjct: 11  RQRLMVLIIAIMITVWGV-----QELRKTPLDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APKLVEEQVTYPLSTAMLAVPGAKTVRGYSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++S+L    + +L    +                     +           ++       
Sbjct: 117 ISSRLPQGVQPSLGPDASGVGWVFEY-ALVDRSGSLDLSQLKSLQDWYLKLELQSVAGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +        +P ++       A +       N+   G +  +         + 
Sbjct: 176 EVATVGGMEQTYQIVLEPDKMAIYKLDIASIKDAIEKSNSEAGGSVIEMAEAEYMVRAKG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +   I L   + +      K V  +       R   E+  +             
Sbjct: 236 YRQTLEDFREIPLGITSPSGTGLLLKDVATVRKGPASRRGIAELDGE------------- 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +   TI+        L+AG       I         L S   
Sbjct: 283 ----GEVVGGIIVMRYGENALSTIDAVKAKLEELKAGLPDGVEIIPTYDRSQLILNSVDN 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI 
Sbjct: 339 LFSKVVEEMLVVGLVCLLFLLHARSTLVAIITLPLSILIAFIVMNKMGVNANIMSLGGIA 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDSNITAL 471
           + IG  VD  I++ E + +   +  +           +  +          +F S I   
Sbjct: 399 IAIGAVVDGAIVMIENLHKHLEQFHTEHNREPDTKEHWRIVTEASIEVGPALFFSLIIIT 458

Query: 472 IATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ V +F      G      A T   ++  S   AI++V  +M + IR K          
Sbjct: 459 LSFVPVFALEAQEGRLFAPLAYTKSFAMAASALLAITLVPVLMGYFIRGKIPSEHKNPIS 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                +        +R     + ++++  + +   +   G  +  + + G  L +   
Sbjct: 519 RVLIALYKPSLNLVLRFPKITLALALIALVSAWYPMTRMGSEFMPELEEGDLLYMPTA 576



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 81/233 (34%), Gaps = 13/233 (5%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-- 667
                E   L+   +   +  +    +   K+ +T  + +    +    G     + +   
Sbjct: 812  MLTSENGRLISWVFIDIEGTSIGEYITTAKQALTAELKVPPRYSYTFAGQYEYMQRVDAK 871

Query: 668  -KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             K ++ + +  I +L+ +        ++  + +L   +  +     L     ++     +
Sbjct: 872  LKQVIPMALGVIFILLMMTFGSTLQASII-MLSLPFALVGSTWLLYLLDYNISVAVAVGM 930

Query: 727  LTLIGYSVNDKVVVY------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            + L G +    V++        + R+    Y T    ++ + +     +     T    F
Sbjct: 931  IALAGVAAEFGVIMLIYLNNAIKHRQEKNNYHTVTDLKEALIEGAVMRIRPKAMTVATIF 990

Query: 781  ISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +LP+      G  V+   A PM  G+V A   S+F+   + L IY  + K 
Sbjct: 991  FGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLIYSRQLKK 1043



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 85/227 (37%), Gaps = 13/227 (5%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +       L  K +  
Sbjct: 287 GGIIVMRYGENALSTIDAVKAKLEELKAGLPDGVEIIPTYDRSQLILNSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L AI TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAIITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNMK----LYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K+++     +      ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEQFHTEHNREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           P+          FA P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 463 PVFALEAQEGRLFA-PLAYTKSFAMAASALLAITLVPVLMGYFIRGK 508


>gi|329114229|ref|ZP_08242991.1| Nodulation protein NolG [Acetobacter pomorum DM001]
 gi|326696305|gb|EGE47984.1| Nodulation protein NolG [Acetobacter pomorum DM001]
          Length = 1060

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 62/600 (10%), Positives = 155/600 (25%), Gaps = 42/600 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V+L  +I   G+       +  +  D FPS                       
Sbjct: 12  LKKPYTFVVLSILILVFGI-----RGIFNTPTDVFPSIRIPVV---------AVVWTYTG 57

Query: 61  DEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              + ++G +  Y +  L + +             +  + + F           ++T   
Sbjct: 58  LMPEDMSGRVVYYYERALTATVNNIEHIESQSYYGRGIVKIYFQPGTDTSVAQTQITSVS 117

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q V  ++       L++      + +V  Q +       A +            +     
Sbjct: 118 QTVIKQMPTGSTPPLVLAYNASSVPVVTLQVSST--SMTASQIYDMSSNLIRPALVSVAG 175

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +  + DP +L     +   +S      N         +         
Sbjct: 176 AAIPNPYGGQPGNIMVDLDPVKLLAHRLSPVDVSRALNSQNIVLPAGDQRIGPFDWMVQT 235

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
               +                      + +  I   ++G           +        +
Sbjct: 236 NASPK--------------------NMEELNMIPIKQVGDAVVRLQDVAWVHAGGPPQTN 275

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++        +       S    +     L   +           +          S 
Sbjct: 276 LVLVKGQQGVLIVIMKSGDASTLDVVAGVKKLLPGIVKTLPEGVSIKILNDASTFVKESV 335

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                     A L  +V+ + +   +  ++   SI L ++ ++  L   G T+ + ++ G
Sbjct: 336 QDVVREMLTAACLTGLVVLLFLGSWRSTVIIATSIPLAMLCSVIGLGWAGQTINVMTLGG 395

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   ++ E I       + +  ++    ++     F S +   I  + LF 
Sbjct: 396 LALAVGILVDDATVMIENIDAHLEMEKDLETAIIDAANQIVIPTFVSTMCICIVWMPLFQ 455

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLI 534
             G         A  +  +++ S   + ++V  M  ++   +          P + F   
Sbjct: 456 LTGVAGWLFMPMAEAIIFAMIASFILSRTLVPTMAKYMLAAQVAAHAHGPQEPKTIFGRF 515

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +F + R     +           +    L           +G      V+   +
Sbjct: 516 QRGFEHKFEQFRHRYHELLSHLVATRGTFVPVFVLCSLGSLGLLFFVGQDFFPEVNSDAI 575



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 54/168 (32%), Gaps = 8/168 (4%)

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             +   +        +   + +L     R     A      ++  +          G   
Sbjct: 333 ESVQDVVREMLTAACLTGLVVLLFLGSWRSTVIIATSIPLAMLCSVIG----LGWAGQTI 388

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           N+  +  +   +G  V+D  V+ + +                I  + N+ +  +  ++M 
Sbjct: 389 NVMTLGGLALAVGILVDDATVMIENI---DAHLEMEKDLETAIIDAANQIVIPTFVSTMC 445

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             I  +P+    G     F  PMA  I+ A  +S  ++  ++  +  +
Sbjct: 446 ICIVWMPLFQLTGVAGWLFM-PMAEAIIFAMIASFILSRTLVPTMAKY 492



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 52/142 (36%), Gaps = 4/142 (2%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      IT L   +        L     ++ A+   +  +G +  + ++V    R+ +
Sbjct: 914  SWLDPFIIITALPGALAGISWSLFLTHTTLSVPALTGAIMCMGTATANAILVVAFARERL 973

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            + +           ++  E +   + T+ A  I +LPM++            +  G++VA
Sbjct: 974  EEHG---DAIQAALEAGFERIRPVLMTASAMIIGMLPMSLSNSQN-APLGKAVMGGLIVA 1029

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
              +++     +   ++  +  +
Sbjct: 1030 TVATLLFVPCVFAMLHTRKKPH 1051


>gi|221064871|ref|ZP_03540976.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
 gi|220709894|gb|EED65262.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
          Length = 1052

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/601 (9%), Positives = 152/601 (25%), Gaps = 62/601 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L ++      +        +  +D  P                   + +      
Sbjct: 25  RWLVMLATLALVGLGIY----NYQRLPIDAVPDITN-------------VQVQINTSAPG 67

Query: 65  F----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +    + L + L          R   +++T+ F D          V   +Q
Sbjct: 68  YSPLETEQRVTFPIETLMAGLPGLDQTRSLSRYGLSQVTVVFKDGTDIYFARQLVNERMQ 127

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQI 174
                L       L   +T      + +    D            ++           Q+
Sbjct: 128 QARDALPAGVAPALGPISTGLGEIYLWTVEADDGATKPDGSPYTPMDLREIQDWVIKPQL 187

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +         +      P +L     T A +       N +            
Sbjct: 188 RNVAGVTEINSIGGFAKEYLVAPQPQKLAAYGFTLADIVAALERNNANVGAGYIE----- 242

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
              G QYL+    ++ GI                + ++       +        ++G   
Sbjct: 243 -RQGEQYLIRAPGQVGGI--------------ADIREVIVGSAQGQPIRVRDLADVGLGR 287

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +       ++     P    +        
Sbjct: 288 ELRTGAATDNGREVVLGTVFMLIGENSRAVAQAVHERMQVINKSLPPGVKAVTVYDRTNL 347

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ +LF+ +   +  L+    I L+++ T   +  +  +  L
Sbjct: 348 VDKAIATVKRNLIEGAALVVAILFLFLGNLRAALITALIIPLSMLFTFTGMVQMRVSANL 407

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIF 464
            S+  +  GI   +D  +++ E                      F  +      A   + 
Sbjct: 408 MSLGALDFGII--IDGAVVIVENCVRRLAHAQAAAGRPLSRSERFEEVFAAAREARRPLL 465

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +  ++  + +F      G      A+T+ +++L +M  +I+ + A +   +  K  +
Sbjct: 466 FGQLIIMVVYLPIFALTGVEGKMFHPMALTVVIALLGAMLLSITFIPAAIALFMGDKVAE 525

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +               ++ ++  +              +G   +
Sbjct: 526 KENRLMGWARRAYAPVLEKVMHAPAVVLTAAGVIVALSLLLATRMGSEFAPNLNEGDFAI 585

Query: 582 G 582
            
Sbjct: 586 Q 586



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 78/217 (35%), Gaps = 8/217 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ ++++     Q    +    + +          + V +  ++     +P        
Sbjct: 820  SSVATVELAPGPNQVSREDGKRRIVVSANVRGRDIGSFVAQAQQELEGIALPAGYWTRWG 879

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                 +     ++ ++ V ++   +   ++  F      L   T +   +T  +    L 
Sbjct: 880  GTFENL-ESARKRLMIVVPVALALVFTLLFAMFGNVRDGLIVFTGIPFALTGGIAALWLR 938

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  +++A    + L G +V + +V+   +R    L    +     + +     L   + 
Sbjct: 939  GIPLSISAAIGFIALCGVAVLNGLVMISYIR---SLREQGMDLEQAVTEGALTRLRPVLM 995

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
            T++ A +  +PMA+    G  V    A  +  GI+ +
Sbjct: 996  TALVASLGFVPMAIATGTGAEVQRPLATVVIGGILSS 1032



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 84/269 (31%), Gaps = 19/269 (7%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+        +   +L  + +G         +    V L          +R +     +
Sbjct: 264 EVIVGSAQGQPIRVRDLADVGLGRELRTGAATDNGREVVLGTVFMLIGENSRAVAQAVHE 323

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGA 696
             +++  S     + V       L+ K I  V       +A+ + I          AL  
Sbjct: 324 RMQVINKSLPPGVKAVTVYDRTNLVDKAIATVKRNLIEGAALVVAILFLFLGNLRAALIT 383

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTTS 754
              + L +  T        +  NL ++ A+    G  ++  VV+ +    R         
Sbjct: 384 ALIIPLSMLFTFTGMVQMRVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQAAAG 441

Query: 755 ISFR-----DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
                    + +  +  E     ++  +   +  LP+    G    +    A+ +   ++
Sbjct: 442 RPLSRSERFEEVFAAAREARRPLLFGQLIIMVVYLPIFALTGVEGKMFHPMALTVVIALL 501

Query: 807 VAASSSI-FIAAPILLFIYDW-RAKNARI 833
            A   SI FI A I LF+ D    K  R+
Sbjct: 502 GAMLLSITFIPAAIALFMGDKVAEKENRL 530


>gi|297538727|ref|YP_003674496.1| acriflavin resistance protein [Methylotenera sp. 301]
 gi|297258074|gb|ADI29919.1| acriflavin resistance protein [Methylotenera sp. 301]
          Length = 1043

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 81/718 (11%), Positives = 197/718 (27%), Gaps = 58/718 (8%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +  ++  + C + +       L ++ LD FP   P             + +V++ +   
Sbjct: 11  RFHGVVIGLACLLIVYGIY--GLSRTNLDVFPEFSP-------------TQVVIQTESPG 55

Query: 65  FVNGFLQMYS-DELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             +  ++      + + L                 + IT+ F +          V   L 
Sbjct: 56  LSSNLVEQLVTQPIETTLSGTVGVESMRSQSIPGLSVITIVFDEHTDIYRNRQVVAERLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +N++L  +   N+    +     + +    I       +E    +       I      
Sbjct: 116 TLNNQLPKNIVPNITPLASSASTVLGM---GITSDKRSLMELRTLVDWTIRPHIMAVPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                    + Q     DPS+L +   +  ++                       +    
Sbjct: 173 ADVNVLGGDVRQFQILVDPSKLIRYNLSIQEVLTA--------------------TARVT 212

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +       +             K    +  +       +         + +  A  +  
Sbjct: 213 GVRGAGYIENNNQRILINTEGQAKNIGQLGQMPIVHRNGQTVRLSDLGQVVEGAAPAISA 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA--GSLPIKLNIVEERNVGADLGS 358
             +           G+   +     E        L     +  I       R       +
Sbjct: 273 AAINGKEGVYFSVQGQLGANTKAVTEAVEKAMRELSPELKAQQITFYPALFRPASFIETA 332

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               K    I + LV+ VLF+ +   +   ++  +I L+++    +L   G  L +  + 
Sbjct: 333 IDGVKTDILIGSTLVIAVLFLFLFNVRTAFISATAIPLSLLAATIVLGYFGTGLNIMVLG 392

Query: 419 GIVLGIGLAVDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITALI 472
           G+ + +G  VD  I+  E I    R+N      Q     +        S++  + I  ++
Sbjct: 393 GLAIALGEVVDDAIIDTENIFRRLRENRLLTNPQPAHQVVFNASMEVRSSVVYATIIVVL 452

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             + L       G            +I+ S+  A+++  A+        K+ S D   ++
Sbjct: 453 VFLPLLTLSGVAGKLFAPLGYAYISAIVASLVVALTLTPALCYIFFSRGKLDSSDPPLIA 512

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID-FKGGIQLGVLANRP 588
                   +  +  R     + ++ +     + +L      +  +  +G   + + A   
Sbjct: 513 WMKKGYVRLLQRIERNYVMVISLTTIVIALGLGILPLFKSQFIPNLHEGHYIMHMTAVPG 572

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
                     E +       +       ++ R               E+    ++     
Sbjct: 573 TSARESLRIGEKVAAVVGHIKGVKSVTQWVGRAPNAADTFGTHYSEFEVELDSLSGPEQN 632

Query: 649 S--TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA--LGAITTLIL 702
                   E+ G  +  +   K   G I    A+  ++  R +   +    A+   I 
Sbjct: 633 RVLDNIREELAGEAVDDDNDGKAETGFIGVTFAINTFLTERIEETISGFTAAMVINIH 690



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 95/286 (33%), Gaps = 21/286 (7%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                L+ T G    I   G + +     + V LS +   +E       +      E  +
Sbjct: 223 NNQRILINTEGQAKNIGQLGQMPIVHRNGQTVRLSDLGQVVEGAAPAISAAAINGKEGVY 282

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV---- 673
                    ++ A T  +E   ++++  +    I     +        I   I GV    
Sbjct: 283 FSVQGQLGANTKAVTEAVEKAMRELSPELKAQQITFYPALFRP--ASFIETAIDGVKTDI 340

Query: 674 -IISAIAMLIYIWIRFKWYFALGAITTLILDIT---KTLGFFALFGIEFNLTAVAAVLTL 729
            I S + + +     F    A  + T + L +      LG    FG   N+  +  +   
Sbjct: 341 LIGSTLVIAVLFLFLFNVRTAFISATAIPLSLLAATIVLG---YFGTGLNIMVLGGLAIA 397

Query: 730 IGYSVNDKVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +G  V+D ++    ++ R+R+N +L T       ++  +  E     VY ++   +  LP
Sbjct: 398 LGEVVDDAIIDTENIFRRLREN-RLLTNPQPAHQVVFNASMEVRSSVVYATIIVVLVFLP 456

Query: 786 MAVWGGSVIGSFA---IPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +    G     FA         IV +   ++ +   +    +    
Sbjct: 457 LLTLSGVAGKLFAPLGYAYISAIVASLVVALTLTPALCYIFFSRGK 502



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 86/241 (35%), Gaps = 8/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  +   +   +        +  +     +    +   EM K+  TE+   S    T 
Sbjct: 803  KDVADISQENGRSKILHAGAKRIQTVTCNIHNRDIASFAREMKKRIKTEVQLSSGNFVTY 862

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA--L 713
                + + +     IV  +++A+ + + ++I F     L       L      G  A   
Sbjct: 863  TGEAEANAKSREDLIVHSLLAAVGIFLMLYIAFGRLRNLLLTFAN-LPFALIGGVIAAMF 921

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   +L ++   +TL G ++ + +++    +  +            I    +E L   +
Sbjct: 922  TGGWISLGSLVGFVTLFGITLRNSIMMVSHYQHLIDEENCVWGLETCIR-GASERLPSIL 980

Query: 774  YTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             T++   + +LP+A+  G          A  +  G+V +   ++ I   I+L    ++ +
Sbjct: 981  MTALVTALGLLPLAIGSGQPGREIEGPMATIIVGGLVTSTILNLLILPTIMLHFGQFKKE 1040

Query: 830  N 830
             
Sbjct: 1041 R 1041


>gi|89256945|ref|YP_514307.1| AcrB/AcrD/AcrF family transporter [Francisella tularensis subsp.
           holarctica LVS]
 gi|167010010|ref|ZP_02274941.1| Transporter AcrB/AcrD/AcrF family protein [Francisella tularensis
           subsp. holarctica FSC200]
 gi|89144776|emb|CAJ80111.1| Transporter AcrB/AcrD/AcrF family [Francisella tularensis subsp.
           holarctica LVS]
          Length = 1037

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 150/524 (28%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G+         +  + ++P                         
Sbjct: 9   RRPVLSLSISFMIIVVGVGS-----FFKLQVRQYPYIDSATIT---------VTTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +  F+    +      K             + IT+         ++  +V   +  
Sbjct: 55  NPATIQAFVTRPLEAAVGSSKGIDYMTSESALGTSTITVYVKLGYNTNDVLSEVVQNVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  D     +   +      ++          +  E S  I  +   ++       
Sbjct: 115 ILNQLPQDAYSPAIKLNSADNFPSLILAFTSK--TMNTSEISAYINSELTPKLLAEGGLS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    + +R+ +   T  ++       +    G      +L  +     
Sbjct: 173 EINVWGNMPYAMRIYPNKTRMAEYGITPTELVTAIGSNSLVSAGGQIQGPYLNYT----- 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  T +   ++   +   +         +           
Sbjct: 228 ---------------LNPETSMSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A      + +    +         ++A         V   +      S   
Sbjct: 273 YFDGKNAVLAGAVVSPEENPLDVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V IV+F+ +   +  +V   +I L++I +  L+S++G ++ L ++  ++
Sbjct: 333 VLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLITLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +    F +   G     + +    +T ++    +   G
Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G     FA ++  ++LIS   A ++   M   ++  + M S
Sbjct: 453 GFTGQLFTEFAYSLAGAVLISGIVAYTLSPMMCSKVLNREMMSS 496



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/485 (12%), Positives = 143/485 (29%), Gaps = 20/485 (4%)

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP--SIAGIVLG 423
            + +  +V +  F  +   ++  +   +I +      A  + + A +T P  +  G   G
Sbjct: 17  ISFMIIVVGVGSFFKLQVRQYPYIDSATITVTTSYPGANPATIQAFVTRPLEAAVGSSKG 76

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYSTIFDSNITALI 472
           I      + L    I    +   +    L                 AYS     N     
Sbjct: 77  IDYMTSESALGTSTITVYVKLGYNTNDVLSEVVQNVNSILNQLPQDAYSPAIKLNSADNF 136

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +++L F               S L     A   +  + ++      M+          +
Sbjct: 137 PSLILAFTSKTMNTSEISAYINSELTPKLLAEGGLSEINVWGNMPYAMRIYPNKTRMAEY 196

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I     +  + +         +        L              + +    N+ V LS
Sbjct: 197 GITPTELVTAIGSNSLVSAGGQIQGPYLNYTLNPETSMSTAQEYRNLIIKKSDNQIVRLS 256

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  + S             +     + +     L      I   +P     
Sbjct: 257 DVARVELGAQNYNSSVYFDGKNAVLAGAVVSPEENPLDVVNRLVKQLPNIKASLPNGLNV 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           +            I + +  ++ + I + I +++        +  I  + L I  +    
Sbjct: 317 DVAYNSTLYIESSIDEVLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           ++ G   NL  + A++  IG  V+D +VV + +    +     +       K   E    
Sbjct: 377 SIMGFSINLITLLAMILAIGLVVDDAIVVLENI---YRHIEEGMEPFAAAIKGAREIANP 433

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++   +   P+ + G   G +   FA  +A  ++++   +  ++  +   + +   
Sbjct: 434 VILMTLTLIVVYAPIGMMGGFTGQLFTEFAYSLAGAVLISGIVAYTLSPMMCSKVLNREM 493

Query: 829 KNARI 833
            ++++
Sbjct: 494 MSSKL 498



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 98/291 (33%), Gaps = 17/291 (5%)

Query: 552  ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
             S                  G  +    ++  L +  V LS + +     Q   ++    
Sbjct: 741  YSFQVIPQLARNEMLTQEQLGNIYIRSDEMNKLFDSEVPLSALVTFKTEGQPLTLNTFQQ 800

Query: 612  DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                     +        A   V  +VK  + E    +   +        +  +     V
Sbjct: 801  LNASTISAVMAPGITQGQAIEYVQSVVKSMLPEGFSYNFSGSARQYNENGNTMM-----V 855

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDI---TKTLGFFALFGIE---FNLTAVA 724
                + + + + +  +F+ +  +L  + T+ + I      L      G      N+    
Sbjct: 856  AFAFAIVLIFLALSAQFESFRDSLVILVTIPMAISGALIPLYVGQYLGASWASLNIYTQL 915

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++TLIG      ++V +    N       ++  D I  S ++ L   + T  A  + V+
Sbjct: 916  GLVTLIGLISKQGIMVVE--FANHLQKHNGMNKYDAIVTSSSQRLRPILMTVSAMVVGVI 973

Query: 785  PMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+    G   I      + ++ G+V+ A  S+F+   + ++I   ++K+ +
Sbjct: 974  PLVTSSGAGAISRNCIGVVISSGLVIGAIFSLFVLPVVYMYIASDKSKSVK 1024


>gi|302871249|ref|YP_003839885.1| protein-export membrane protein SecD [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574108|gb|ADL41899.1| protein-export membrane protein SecD [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 415

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E  +  +   II  + + +++ I ++    L A   L+  I   +       
Sbjct: 230 AIGPSLGNEAFKSTLKAGIIGILLVFLFMIIFYRLP-GLVADIALVAYIVILVAIVGYAK 288

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I   L  +A ++   G +V+  ++++ R+++ ++   +  + R  +D      L   + +
Sbjct: 289 ITLTLPGIAGIILSAGMAVDANILIFARLKEELR---SGKTLRAAMDAGFRRALNAVIDS 345

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++   I+ + +   G   I  FA  +  GIVV+  ++I +   +L
Sbjct: 346 NVTTIIAGIVLLFLGTGPIKGFAWTLTIGIVVSFFTAITVTRFLL 390



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 123/405 (30%), Positives = 214/405 (52%), Gaps = 28/405 (6%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              +K +      K    ++ +   +      +E ++++IR R+D     ++T    GS 
Sbjct: 35  PSVQKVIRYGLDLKGGVYIVYEAAKENPTRREMESALQLIRTRLDMRNFYDATATIQGSK 94

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI +++PG +DP    Q +G TA + F                                +
Sbjct: 95  RIRVEIPGVKDPDEAIQYIGRTALIEF--------------------------KGPSGDL 128

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +SG ++    A         VV + FD+ G ++F E T+  +G+ + + LDG++++ PV
Sbjct: 129 IVSGRNVVD--AYAQQTASGYVVALKFDKEGTKKFAEGTKKYLGQNIGIYLDGKLISNPV 186

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I +G+A I G   +E A  LA  ++AG+LP  LN++E + +G  LG+++      A
Sbjct: 187 VRSEIDNGEAVIEGMKDLEEAKTLAQQIKAGALPFALNVIESKAIGPSLGNEAFKSTLKA 246

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + G++L+ LFMI+ Y   GLVAD ++   +++ +A++     TLTLP IAGI+L  G+A
Sbjct: 247 GIIGILLVFLFMIIFYRLPGLVADIALVAYIVILVAIVGYAKITLTLPGIAGIILSAGMA 306

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+NIL+  R++EE R  +++  ++D GF RA + + DSN+T +IA +VL F G G ++G
Sbjct: 307 VDANILIFARLKEELRSGKTLRAAMDAGFRRALNAVIDSNVTTIIAGIVLLFLGTGPIKG 366

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           FA T+ + I++S FTAI++ R ++  II     K I      +  
Sbjct: 367 FAWTLTIGIVVSFFTAITVTRFLLTSIINTGLFKDIRWYGGKKTR 411



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 1   MRNNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N      L   ++      I       +      PS   +  I  GLDL+GG ++V E
Sbjct: 1   MQNKSLAKFLIGCLVIAFAFYIVFFGL--EIGTASIPSV--QKVIRYGLDLKGGVYIVYE 56

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
             +++     ++     +R+ L        +     + +I +     +  +     +   
Sbjct: 57  AAKENPTRREMESALQLIRTRLDMRNFYDATATIQGSKRIRVEIPGVKDPDEAIQYIGRT 116

Query: 119 L 119
            
Sbjct: 117 A 117


>gi|284005690|ref|YP_003391510.1| heavy metal efflux pump, CzcA family [Spirosoma linguale DSM 74]
 gi|283820874|gb|ADB42711.1| heavy metal efflux pump, CzcA family [Spirosoma linguale DSM 74]
          Length = 1480

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 85/680 (12%), Positives = 184/680 (27%), Gaps = 52/680 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE-- 59
           RN   + +L  ++   G        L +  +D  P                   ++    
Sbjct: 11  RNKLIIGLLTLVLIGWGSYA-----LNRLPIDALPDITSNQ-----------VQVITRSP 54

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    ++  + +          R   + +TL F D+        +V   L
Sbjct: 55  ALAAQEVERLITFPVEQTMATIPDITQIRSISRFGLSVVTLVFKDATDLYWARQQVDERL 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNID---QVISHAIEQSMEIIRQRIDQIGI 176
               +++     +  L   +     I           +     +E           Q+  
Sbjct: 115 SEARAQIPPGTGEPTLGPISTGLGEIYQYVLYAKPGYEKRYSPMELRSMQDWVVRRQLLG 174

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           +           +L Q     DP RLR    +   +       N +  G     +     
Sbjct: 175 TPGVADVSSFGGLLKQYEIAVDPDRLRSYGLSIGDLFTALEKNNQNTGGAYIDKKPNAYF 234

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
             ++ LV    ++                    + +     G                  
Sbjct: 235 IRSEGLVGSLADMG------------------RIVVRRTAGGVPVLIRDVAQVRFGSAVR 276

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                         A+       + N  I         ++          V         
Sbjct: 277 YGALTRNGDGEAVGAVVLMLKGENANEVIGRVKTKIDQIQRTLPEGVAIHVFLDRSALVG 336

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +           A +V+ VL + +   + GLV    I L ++  + ++SL G +  L S
Sbjct: 337 RAIHTVTRNLIEGALIVIFVLILFLGNWRAGLVVASVIPLAMLFAIGMMSLFGVSGNLMS 396

Query: 417 IAGI--VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN------- 467
           +  I   L +  AV         +     K  +    +D     A S I  S        
Sbjct: 397 LGAIDFGLIVDGAVIIVEATLHHLAGRRVKRFTQSQ-MDEEVFEAASRIRSSAAFGEIII 455

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY--KKMKSIDI 525
           +   +  + L    G   R  A  +  +IL +   +++ V  +   ++    ++  ++  
Sbjct: 456 LIVYLPILALVGIEGKMFRPMAQVVSFAILGAFILSLTYVPMVSALLLSKTIRQQPTLSD 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +  F+ + D      +RA+ W V    L  +     LF+      I         V  
Sbjct: 516 RMMGFFYRLYDPAIRWALRAK-WLVLGVALGLLVGAGWLFSRLGGEFIPELSEGDFAVEL 574

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                 S+ ++  + LQ   +  + F   +  + ++      +         +   +   
Sbjct: 575 RTLTGSSLSQTEDKFLQSARLLLKQFPEVREVIGKIGAGEIPTDPMPIEAGDLMVLLKPQ 634

Query: 646 VPLSTIQNTEIVGPKISREL 665
              ++  N E +  K++  L
Sbjct: 635 TEWTSADNQEELADKMAEAL 654



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 61/168 (36%), Gaps = 13/168 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + I + + I     W   L   + + L +   +G  +LFG+  NL ++ A+    G 
Sbjct: 347 IEGALIVIFVLILFLGNWRAGLVVASVIPLAMLFAIGMMSLFGVSGNLMSLGAI--DFGL 404

Query: 733 SVNDKVVVYD---------RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V+  V++ +         R+++  +       F        +   G  +   +  ++ +
Sbjct: 405 IVDGAVIIVEATLHHLAGRRVKRFTQSQMDEEVFEAASRIRSSAAFGEIII--LIVYLPI 462

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           L +    G +    A  ++F I+ A   S+     +   +     +  
Sbjct: 463 LALVGIEGKMFRPMAQVVSFAILGAFILSLTYVPMVSALLLSKTIRQQ 510



 Score = 39.3 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 84/216 (38%), Gaps = 13/216 (6%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L S+ +     Q    +    + + +       ++ V E+  K   +I   +    T  
Sbjct: 802  QLASVSLKPGPNQIQREDAKRRLTIAFNVRGRDVESVVRELQGKIDAQIKLPTGYSITYG 861

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-- 714
               +   E   +  + V ++   + + +++ F      G I T I  ++   G  AL+  
Sbjct: 862  GQFENLIEARERLTIAVPVALALIFLLLFVTFGSVRQAGLIFTAI-PLSAIGGVIALWLR 920

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
             + F+++A    + L G +V + +V+   ++R+R+   +        ++I +     L  
Sbjct: 921  DMPFSISAGVGFIALFGVAVLNGIVLMAEFNRIRREQGV----TDLHEVIYQGTAARLRP 976

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
             + T+  A +  LPMA+    G  V    A  +  G
Sbjct: 977  VLMTATVASLGFLPMALSTTAGAEVQKPLATVVIGG 1012


>gi|149913239|ref|ZP_01901773.1| putative cation efflux system transmembrane protein [Roseobacter
           sp. AzwK-3b]
 gi|149813645|gb|EDM73471.1| putative cation efflux system transmembrane protein [Roseobacter
           sp. AzwK-3b]
          Length = 1059

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/592 (12%), Positives = 159/592 (26%), Gaps = 43/592 (7%)

Query: 5   PWLVI--LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            W +      ++    L       L  + +D  P       I                  
Sbjct: 7   RWSIANRFIVIVLAFFLGAGGFWALRTTPVDAIPDLSDVQVI---------IKTPYAGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPITTAMLSVPGAVDVRGFSFFGDSYVYVVFEDGTDLYWARSRVLEYLAQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L       L    T                     +           ++   E   +
Sbjct: 118 QSRLPAGVSPELGPDATGVGWIYQYV-LVDRTGGHDLSQLRTLQDWFLKYELQTIEGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +LR      +K+       N    G +  +            
Sbjct: 177 VATIGGMVKQYQVVVDPDKLRAFDIPLSKLRMAIGEANRESGGSVIEMAEAEYMVRATGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+   ++S                   + +  ++ GA        +    P      G  
Sbjct: 237 VDSIEDLS------------------EIPLMVNDRGAAITLGDVAEIRLGPQMRRGVGEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                   A+   +   +   TI+        LRA        +      G    +    
Sbjct: 279 NGEGDAVGAVIVMRWGENALTTIQAVEAKLDNLRASLPAGVEIVTTYDRSGVIERAIDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        +V++V    +L+ +  LV    + L ++   A++ L G    + S+ GI +
Sbjct: 339 QTKLTEEFIVVVLVCGAFLLHLRSSLVIVLFLPLGILAAFAVMRLQGVNANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD+ +++ E +  +    +      + +     S     +F S     ++ + +F
Sbjct: 399 AIGAMVDAAVVMIEAMHRKMEGKRLSAEDRWHAAREAASEVGPALFYSLAIITVSFLPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR------YKKMKSIDINPLS 529
                 G   +  A T   ++  +   ++++V  +M + IR       +   ++    + 
Sbjct: 459 VLEAQEGRLFKPLAFTKTYAMAAAAILSVTLVPVLMGYFIRGKIVAERRNPLNVACQWMY 518

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           R FL                +  S+   +  +   F   LN G         
Sbjct: 519 RPFLDAAVAWPWATVLLAMALVGSMAHPLQRLGTEFMPELNEGDFLYMPSLY 570



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 79/263 (30%), Gaps = 20/263 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   +   + L  V         G I  +N        + +  +   S        + +
Sbjct: 780  PIVTPSGAHIPLGAVAEVKLVDGPGMIRSENARRTGFVFIDIAGRDLGSYVAEAQQVVAQ 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                                ++   L   G+V    + + + + +++ F       AI  
Sbjct: 840  NVDLPPGYSIAWSGQYEYIERVQERL---GLVA-PATLMIITLMLFLAFN-RVTEVAIIL 894

Query: 700  LILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVY-------DR---MRKN 747
            L L +    G + +F  G   ++  +   + L G +V   +V+        DR   + K 
Sbjct: 895  LALPVALAGGVWLIFTLGYAVSVAVLVGFIALAGVAVETAIVMLLYLNLAWDRHVLVAKE 954

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMAFG 804
                         + +     L   + T    F  ++P+      G  V+   A PM  G
Sbjct: 955  QNRAVNRDDIEKAVFEGALLRLRPKLMTVATIFAGLIPIMYGDATGSEVMQRIAAPMIGG 1014

Query: 805  IVVAASSSIFIAAPILLFIYDWR 827
            +      ++F+   I +    + 
Sbjct: 1015 MATTTLLTLFVIPAIFVIWKRFS 1037



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 57/156 (36%), Gaps = 4/156 (2%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + +L+          +L  +  L L I        L G+  N+ ++  +   IG  V+
Sbjct: 346 FIVVVLVCGAFLLHLRSSLVIVLFLPLGILAAFAVMRLQGVNANIMSLGGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS-- 792
             VV+ + M + M+    ++        ++ +E      Y+     +S LP+ V      
Sbjct: 406 AAVVMIEAMHRKMEGKRLSAEDRWHAAREAASEVGPALFYSLAIITVSFLPVFVLEAQEG 465

Query: 793 -VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    A    + +  AA  S+ +   ++ +    +
Sbjct: 466 RLFKPLAFTKTYAMAAAAILSVTLVPVLMGYFIRGK 501


>gi|220935904|ref|YP_002514803.1| acriflavin resistance protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997214|gb|ACL73816.1| acriflavin resistance protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1041

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 45/467 (9%), Positives = 119/467 (25%), Gaps = 28/467 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
             +       +     L    +     +           +    I L F           
Sbjct: 48  VSVTYSGISPEDSERLLVRPLERELMPVAGLKELQSRAGEGFALIRLDFEPGYDNRQALA 107

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  V  +L     +  ++        ++ +  +        +  +    R   D+
Sbjct: 108 DVREQVDLVRGELPQGTDEPQVIEVDLSMFPVLTTTLSGPVPERTLVRIA----RDLRDR 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +      ++       +  L    DP  +        ++                     
Sbjct: 164 LESLPGVLEVNIGGDRVDVLEVMVDPLVMETYRIPYQQLIQAI----------------- 206

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
              + N  LV      +G            ++ + V+++                   + 
Sbjct: 207 ---ERNNRLVAAGAMDTGAGRVTLKVPGVIESLEDVLNLPVMVDAGTVVTFGDVATGRRT 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                    +            +   +   T+  A  +    RA           +    
Sbjct: 264 FKDPEGFARINGQPAVSLEIRKRGGANIIHTVNDAMAVIEAARADWPEAVRVDHLQNMAD 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                    +    +   LV++ +   +       +   +I    +  +  + L+G TL 
Sbjct: 324 DIADLLGDLENNVILAIVLVMLTIVAALGGRSS-WLVGLAIPGAFLGGILAIHLMGFTLN 382

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           +  +  ++L +G+ VD  I+V E+      +      +      R    I  S +T L  
Sbjct: 383 IVVLFSLILVVGMLVDGAIVVVEQADRYLAEGMDRREAFGRAAVRMSWPIIASTLTTLAV 442

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
              + F+ G     +     T+ +++  S+  A+  +  +   +   
Sbjct: 443 FFPMLFWPGMVGEFMFFLPATVLVTLTASLLMALIFIPTLGSLVGAR 489



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 80/222 (36%), Gaps = 8/222 (3%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+  +      I+ Q     +                  V+E  +    E V +  +QN 
Sbjct: 262 RTFKDPEGFARINGQPAVSLEIRKRGGANIIHTVNDAMAVIEAARADWPEAVRVDHLQNM 321

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 +  +L    I+ +++  + ++  +  R  W   L      +  I        L 
Sbjct: 322 ADDIADLLGDLENNVILAIVLVMLTIVAALGGRSSWLVGLAIPGAFLGGILAI----HLM 377

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   N+  + +++ ++G  V+  +VV +   +  +     +  R+   ++        + 
Sbjct: 378 GFTLNIVVLFSLILVVGMLVDGAIVVVE---QADRYLAEGMDRREAFGRAAVRMSWPIIA 434

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           +++       PM  W G ++G F   +   ++V  ++S+ +A
Sbjct: 435 STLTTLAVFFPMLFWPG-MVGEFMFFLPATVLVTLTASLLMA 475



 Score = 38.1 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 64/180 (35%), Gaps = 27/180 (15%)

Query: 671  VGVIISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFAL----FGIEFNLTAVAA 725
            +   ++   M + +  +F   +  G +   ++      L    L    FGI  +   V A
Sbjct: 864  LAFGLAVFLMFLILVTQFNSLYQAGLVLSAIVFSTAGVLLGLILRQEAFGIVMSGVGVIA 923

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +    G  VN+ +V+ D       L    +   +   ++  + L   + T++   + + P
Sbjct: 924  LA---GIVVNNNIVLIDTYN---VLRRQGLDAVEAALRTGAQRLRPVLLTTITTILGLTP 977

Query: 786  M------------AVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            M               G          A  ++ G++VA   ++ +   +L+   D R ++
Sbjct: 978  MVFGLTVDFTGRDFSIGAPSTQYWVQLATAISGGLLVATPLTLLVTPAMLV-WGDRRGRD 1036


>gi|5921518|emb|CAB56471.1| czrA protein [Pseudomonas aeruginosa]
          Length = 1051

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/596 (10%), Positives = 153/596 (25%), Gaps = 62/596 (10%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  +G+         +  +D  P                 +++ ++++          
Sbjct: 16  VLLAVLGMAGVGIGSYQKLSIDAVPDI---------------TNVQVQINTAAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +    + + + L          R   +++T+ F +         +V   L     +
Sbjct: 61  VEQRITYPVETVMAGLPGLQETRSLSRPGISQVTVIFEEGTDIYFARQQVNERLSTAREQ 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH------AIEQSMEIIRQRIDQIGISES 179
           L  D    L   +T      + +    +             +           Q+   + 
Sbjct: 121 LPEDISPTLGPISTGLGEIYLWTVEAEEGATKEDGSAYTPTDLRTIQDWIIRPQLRNVKG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +     R   Q     DP +L     T   +    +  N +        R  +     
Sbjct: 181 VAEINTIGRYAKQFLIAPDPKKLAAYKLTLGDLQNAVLRNNENVGAGYIERRGEQLLIRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+D  +I G                    I    +            +G    +   
Sbjct: 241 PGQVKDMDDIRG--------------------IIVSNVDGVPIRIRDVAEVGLGKELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +  G     +          I           + 
Sbjct: 281 RATENGREVVLGTVFMLIGENSREVAQAVGQRLEEINRTLPKGVKAITVYDRTTLVDKAV 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+ VLF+ +   +  L+    I L+++ T   +     +  L S+  
Sbjct: 341 ATVKKNLVEGAALVIAVLFLFLGNIRAALITATIIPLSMLFTFTGMVGNRVSANLMSLGA 400

Query: 420 IVLGIGLAVDSNILVNER-----IREENRKNQSVFCS-----LDMGFSRAYSTIFDSNIT 469
           +  GI   VD  +++ E         +    + +  +     +      A   +    I 
Sbjct: 401 LDFGII--VDGAVVIVENAIRRLAHAQAHHGRQLTRAERFHEVFAASREARRALIFGQII 458

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++  + +F      G      A T+  ++L +M  +++ V A +   I  K  +  +  
Sbjct: 459 IMVVYLPIFALTGVEGKMFHPMAFTVVTALLGAMILSVTFVPAAIALFITGKVKEEENFV 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                      +            G   +  + ++              +G   + 
Sbjct: 519 MRRARLAYEPALRWVLGHRALVVGGALGVILLTALVASRMGSEFIPSLSEGDFAMQ 574



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+  GI  +++A    + L G +V + +V+   +R    L     S    +
Sbjct: 915  FALTGGVLALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIR---NLLQEGRSLDQAV 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 972  WEGAITRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTMLTLLVLPV 1031

Query: 819  ILLFIYDW 826
            +  + +  
Sbjct: 1032 LYRWTHGR 1039


>gi|29347449|ref|NP_810952.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29339349|gb|AAO77146.1| cation efflux system protein, AcrB/AcrD/AcrF family protein
           [Bacteroides thetaiotaomicron VPI-5482]
          Length = 1042

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 82/679 (12%), Positives = 189/679 (27%), Gaps = 48/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   ++    ++   G   A+   +        P+ +     +       G       
Sbjct: 10  LHNRLVVLCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L V+  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 VVSESLPVNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +   + DP R+R    +  ++        N          F  +     
Sbjct: 174 AQVAVLGGDIKEYQIQLDPERMRHYGVSMGEVM-AVTQDMNLNANGGVLYEFGNEYIARG 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L   KVE  G  +     NF                            IG     +   
Sbjct: 233 VLSTPKVEELGKAVVKTVNNFPVTLEDIADV-----------------KIGPKAPKLGTA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P +   +    A  +   T +    L  + +     +K++    R       S  
Sbjct: 276 SERGKPAVLMTVTKQPATSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+
Sbjct: 336 NVKKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+    +        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVYKRLRENRQKAEAERFSTLEVVFNASKEVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDIN 526
           + V LFF  G   R      I   +++  S   A+++   +  ++    +  K       
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGSNKTNKELKESFV 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +       R       +LF I                 +G   + + + 
Sbjct: 516 ARWMKGIYEKALTWVLAHKRVTLGSTIVLFLIALGVFFTLGRSFLPSFNEGSFTINISSL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   ++            R +            +E   +      
Sbjct: 576 PGISLEESNKMGHRAEELLLTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRPR 635

Query: 647 PLSTIQNTEIVGPKISREL 665
                +  E +G      +
Sbjct: 636 SELVAEVREKLGTITGANI 654



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 84/266 (31%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      D+ +     +     +                         +  + 
Sbjct: 248 KTVNNFPVTLEDIADVKIGPKAPKLGTASERGKPAVLMTVTKQPATSTLELTDKLEASLQ 307

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         L 
Sbjct: 308 DLQKNLPADVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTLI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLY 751
           ++ TL L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +  
Sbjct: 365 SLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRQKA 424

Query: 752 T-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
                S  +++  +  E     + +++   +S +P+    G    ++    I     +  
Sbjct: 425 EAERFSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGIAFIVALFA 484

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N  +
Sbjct: 485 STVVALTLTPVLCSYLLGSNKTNKEL 510



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 101/264 (38%), Gaps = 11/264 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++  + N  VD +  R    +     +S    +      V+ +     +VA  
Sbjct: 766  VKDDARDEMEKIRNLMVDTNDGRKVPLNYVAEVVSSMGPNTINRENVKRKIVISANVADR 825

Query: 633  RVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +  +V     ++     +        G +   E     ++ +      ++I++ +  ++
Sbjct: 826  DLRSVVNDIQKQVDATIQLPEGYHIEYGGQFESEQAASRVLALTSFMSIVIIFLLLYHEF 885

Query: 691  YFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +  L L +    G FAL     E ++ A+   ++L G +  + +++      N
Sbjct: 886  RSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHY--N 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAF 803
                   ++  D + +   + L   + T++++ ++++P+A+     G+ I S  A  +  
Sbjct: 944  HLQQVEGLNVYDSVVQGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWR 827
            G++ +   + FI   + L ++  R
Sbjct: 1004 GLLTSTFLNGFIVPIVYLMMHRQR 1027


>gi|113460760|ref|YP_718827.1| cation/multidrug efflux protein [Haemophilus somnus 129PT]
 gi|112822803|gb|ABI24892.1| cation/multidrug efflux protein [Haemophilus somnus 129PT]
          Length = 1038

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 57/464 (12%), Positives = 138/464 (29%), Gaps = 26/464 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +  F+    +E  +          S     + IT+    +         V   +  V
Sbjct: 56  ANLMQAFVTSTLEEAIAQADNIDYMSSSSAANSSIITVKMKLNTDPNGALADVLAKVNSV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L  + +  ++ ++T     I+      D++   + + +  I R    Q+   E   +
Sbjct: 116 RSRLPHNIEDPVISSSTGGT-GIMYISFYSDKL--DSSQVTDYIERVVKPQLFTIEGVAK 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L    DP ++     +   +       N           +    +     
Sbjct: 173 AQIFGAAQYALRIWLDPEKMAAQNLSALAVMSALSANNVQTAAGSADGYYTVYKNKVGTT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                ++                     ++                 +            
Sbjct: 233 TNSVKDLE--------------------NLIVYSKDDNLVRLRDIATVELNKESDSTRAT 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         A  +     E    L A ++        + +      A   S +  
Sbjct: 273 ANGADSVVLAIEPTATANPLTVAENVRPLYAQIKQNLPSSMYSDLLYDRTIAINSSINEV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +VL+V+ + +   +  L+   +I +++I  + +L L   ++ L ++  ++L
Sbjct: 333 IKTIIEATVIVLVVILLFIGSLRAILIPIITIPISLIGVIMILQLFDFSINLMTLLAMIL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E +    +  ++ F +  +G       +    I  +     +   G 
Sbjct: 393 AIGLVVDDAIVVLENVDRHIKAGETPFRAAIIGTREIAIPVISMTIALIAVYSPMALMGG 452

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
             G   + FA+T+  ++ IS   A+++   M   ++      + 
Sbjct: 453 ITGSLFKEFALTLAGAVFISGIVALTLSPMMTSKLLNNNAKPNR 496



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/208 (17%), Positives = 81/208 (38%), Gaps = 9/208 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                +   +K+ +   +    + +  I       E+I+  I   +I  + +L++I    
Sbjct: 296 ENVRPLYAQIKQNLPSSMYSDLLYDRTIAINSSINEVIKTIIEATVIVLVVILLFIG--- 352

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  I T+ + +   +    LF    NL  + A++  IG  V+D +VV + +    
Sbjct: 353 SLRAILIPIITIPISLIGVIMILQLFDFSINLMTLLAMILAIGLVVDDAIVVLENV---D 409

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      +          E     +  ++A      PMA+ G   GS+   FA+ +A  +
Sbjct: 410 RHIKAGETPFRAAIIGTREIAIPVISMTIALIAVYSPMALMGGITGSLFKEFALTLAGAV 469

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833
            ++   ++ ++  +   + +  AK  R+
Sbjct: 470 FISGIVALTLSPMMTSKLLNNNAKPNRL 497



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/167 (14%), Positives = 67/167 (40%), Gaps = 18/167 (10%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT------------LGFFALFGI 716
            ++  +++ + + + + I+F+     L  +  + L ++              +    L G+
Sbjct: 848  VITFVLAVLIIFLVLAIQFESIRDPLVIMVAVPLAVSGALLVLNFLSLLTDMRILRLSGV 907

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              N+ +   ++TL+G      +++ +  ++       S    D I ++    L   + T+
Sbjct: 908  TLNIYSQVGLITLVGLITKHGILMCEVAKEEQLYLGKSR--IDAITEAARVRLRPILMTT 965

Query: 777  MAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             A    ++P+ +    G +   S AI +  G+ +    ++F+   I 
Sbjct: 966  AAMVAGLIPLLLASGAGAASRFSIAIVLVAGLSIGTLFTLFVLPVIY 1012


>gi|260174012|ref|ZP_05760424.1| cation efflux system protein, AcrB/AcrD/AcrF family protein
           [Bacteroides sp. D2]
 gi|315922280|ref|ZP_07918520.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696155|gb|EFS32990.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1032

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/679 (10%), Positives = 183/679 (26%), Gaps = 48/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   +V    ++   G   A+   +        P+ +     +       G       
Sbjct: 10  LHNRLVVVCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L V+  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 VVSESLPVNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +   + DP R+R    +  ++       N +  G +             
Sbjct: 174 AQVAVLGGDIKEYQIQLDPERMRHYGISMGEVMAVTQDMNLNANGGVLYEFGNEYIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++    +               V                   IG     +   
Sbjct: 234 LSTSKTEQLGKAVVKTVNNFPVTLEDIANVT------------------IGPKAPKLGTA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +   +    A  +   T +    L  + +     +K++    R       S  
Sbjct: 276 SERGKSAVLMTVTKQPATSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+
Sbjct: 336 NVKKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+    +        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVYKRLRENRLKVEAERLSTLEVVFNASKEVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDIN 526
           + V LFF  G   R      +   +++  S   A+++   +  ++    +  K       
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGVAFIVALFASTIVALTLTPVLCSYLLGSNKTNKKLKEAPV 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +       R        LF +                 +G   + + + 
Sbjct: 516 ARWMKGIYEKALTWVLAHKRVTLGSTIGLFVVALGVFFTLGRSFLPSFNEGSFTINISSL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   ++            R +            +E   +      
Sbjct: 576 PGISLEESNKMGHRAEELLMTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSR 635

Query: 647 PLSTIQNTEIVGPKISREL 665
                   E +G      +
Sbjct: 636 SELVADVREKLGTITGANI 654



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 89/266 (33%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      ++++     +     +                         +  + 
Sbjct: 248 KTVNNFPVTLEDIANVTIGPKAPKLGTASERGKSAVLMTVTKQPATSTLELTDKLEASLK 307

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         L 
Sbjct: 308 DLQKNLPPDVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTLI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN-MKL 750
           ++ TL L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +K+
Sbjct: 365 SLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRLKV 424

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +S  +++  +  E     + +++   +S +P+    G    ++    +     +  
Sbjct: 425 EAERLSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGVAFIVALFA 484

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N ++
Sbjct: 485 STIVALTLTPVLCSYLLGSNKTNKKL 510



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 99/268 (36%), Gaps = 11/268 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++  + N  VD +  R    S     +S    +      V+ +     +VA  
Sbjct: 766  VKDDARDEIEKIRNLMVDTNDGRKVPLSYVAEVVSAMGPNTINRENVKRKIVISANVADR 825

Query: 633  RVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +  +V      I     +        G +   E      + +      ++I++ +  ++
Sbjct: 826  DLRSVVNDIQKRIDTSVQLPEGYHIEYGGQFESEQAASRTLALTSFISIVVIFLLLYNEF 885

Query: 691  YFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +  L L +    G FAL     E ++ A+   ++L G +  + +++      N
Sbjct: 886  RSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHY--N 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAF 803
                   ++  D + +   + L   + T++++ ++++P+A+ G      +    A  +  
Sbjct: 944  HLQKEEGLNVYDSVIQGSLDRLNPILMTALSSALALIPLALAGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++ +   + FI   + L ++   A+ +
Sbjct: 1004 GLLTSTFLNGFIVPIVYLMMHRKEAQKS 1031


>gi|149189309|ref|ZP_01867595.1| putative silver efflux pump [Vibrio shilonii AK1]
 gi|148836868|gb|EDL53819.1| putative silver efflux pump [Vibrio shilonii AK1]
          Length = 1040

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 76/644 (11%), Positives = 168/644 (26%), Gaps = 39/644 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ +    +  L ++ N    + +D  P       I                  
Sbjct: 11  NNRFLVLVATCFLTLAGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    K  L    T                     E           ++       +
Sbjct: 118 TPNLPAQAKPTLGPDATGVGWIYSYV-LQDKTGQHDLAELRSIQDWFLKYELQTVAGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYDLTLQQVNMAIKNGNQETGASVIEVGEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +     G         D    P         
Sbjct: 237 LSSIEDIKA------------------LPLKVTSKGTPLLLGDIADINLGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I         L+ G       +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASQVIHDVKAKLEELQRGLPDGVEIVATYDRSTLIDAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  LV   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFVVVAIVCALFLFHIRSSLVIAISLPIGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   K    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIEKTPLTDKNRWQVIGRAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +            ++ 
Sbjct: 459 ALEGQEGKMFSPLAYTKTYAMAAAAGLAITLVPVLMGYFIRGKVLPEHKNPVNKALIVLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             +    +R     + ++I+    +       G  +      G  + +    P       
Sbjct: 519 QPMLNLSLRYPKSMIVLAIVLMGSAFYPTSKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L       I            +       D    T +   ++
Sbjct: 579 RELLQQTNKLIKTVPEVETVWGKIGRAETATDPAPLTMIETTIQ 622



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/204 (14%), Positives = 70/204 (34%), Gaps = 2/204 (0%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           NL       IS  N +GE    V +     ++      ++   +++   +P         
Sbjct: 266 NLGPQMRRGISEFNGEGEAVGGVIVMRFGENASQVIHDVKAKLEELQRGLPDGVEIVATY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    + + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDAAVENLWKKLAEEFVVVAIVCALFLFHIRSSLVIAISLPIGILSAFIVMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVY 774
           I  N+ ++  +   IG  V+  +V+ + + K+++    +   R  +I ++  E      +
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMIENVHKHIEKTPLTDKNRWQVIGRAAEEVGAPLFF 445

Query: 775 TSMAAFISVLPMAVWGGSVIGSFA 798
           + +   +S +P+    G     F+
Sbjct: 446 SLLIITLSFVPVFALEGQEGKMFS 469



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 85/287 (29%), Gaps = 20/287 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVAEIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        + ++         T         +    L    +V V +
Sbjct: 816  WVFVDIAERDLGSYVTEAQNVVAEQLSLPAGYSLTWSGQYEYMERAKERL--SVVVPVTL 873

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            S I +L+Y+  R +    L  + TL L +   L      G  F++      + L G +V 
Sbjct: 874  SIIMLLLYLSFR-RVGEVLVIMGTLPLAMVGGLWLMHYLGYNFSIAVGVGFIALAGVAVE 932

Query: 736  DKVVVYDRMRKNMKLYTTSIS------------FRDLIDKSINETLGRSVYTSMAAFISV 783
              V++   +  N   +   ++              + I +     +   + T +   I +
Sbjct: 933  IGVIML--VYLNQAWHARKLAAQENKSPLTLDMLTEAIREGAGLRVRPVMMTVLTVIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +P+      G  V+   A PM  G+  A   ++ +   I        
Sbjct: 991  IPIMYGSGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIYKLWKSKE 1037


>gi|146291390|ref|YP_001181814.1| CzcA family heavy metal efflux protein [Shewanella putrefaciens
           CN-32]
 gi|145563080|gb|ABP74015.1| heavy metal efflux pump, CzcA family [Shewanella putrefaciens
           CN-32]
          Length = 1049

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/598 (12%), Positives = 169/598 (28%), Gaps = 45/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++I+  MI   G+       L ++ LD  P       I                 
Sbjct: 11  RQRLMVLIIAIMITVWGV-----QELRKTPLDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APKLVEEQVTYPLSTAMLAVPGAKTVRGFSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++S+L    + +L    +                     +           ++       
Sbjct: 117 ISSRLPQGVQPSLGPDASGVGWVFEY-ALVDRSGSLDLSQLKSLQDWYLKLELQSVAGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +        +P ++       A +       N+   G +  +         + 
Sbjct: 176 EVATVGGMEQTYQIVLEPDKMAIYKLDIASIKDAIEKSNSEAGGSVIEMAEAEYMVRAKG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +   I L   + +      K V  +       R   E+  +             
Sbjct: 236 YRQTLEDFREIPLGITSPSGTGLLLKDVATVRKGPASRRGIAELDGE------------- 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +   TI+        L+AG       I         L S   
Sbjct: 283 ----GEVVGGIIVMRYGENALSTIDAVKAKLEELKAGLPDGVEIIPTYDRSQLILNSVDN 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI 
Sbjct: 339 LFSKVVEEMLVVGLVCLLFLLHARSTLVAIITLPLSILIAFIVMNKMGVNANIMSLGGIA 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDSNITAL 471
           + IG  VD  I++ E + +   +  +           +  +          +F S I   
Sbjct: 399 IAIGAVVDGAIVMIENLHKHLEQFHTEHNREPDTKEHWRIVTEASIEVGPALFFSLIIIT 458

Query: 472 IATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ V +F      G      A T   ++  S   AI++V  +M + IR K          
Sbjct: 459 LSFVPVFALEAQEGRLFAPLAYTKSFAMAASALLAITLVPVLMGYFIRGKIPSEHKNPIS 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                +        +R     + ++++  + +   +   G  +  + + G  L +   
Sbjct: 519 RVLIALYKPSLNLVLRFPKITLALALIALVSAWYPMTRMGSEFMPELEEGDLLYMPTA 576



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 81/233 (34%), Gaps = 13/233 (5%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-- 667
                E   L+   +   +  +    +   K+ +T  + +    +    G     + +   
Sbjct: 812  MLTSENGRLISWVFIDIEGTSIGEYITTAKQALTAELKVPPRYSYTFAGQYEYMQRVDAK 871

Query: 668  -KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             K ++ + +  I +L+ +        ++  + +L   +  +     L     ++     +
Sbjct: 872  LKQVIPMALGVIFILLMMTFGSTLQASII-MLSLPFALVGSTWLLYLLDYNISVAVAVGM 930

Query: 727  LTLIGYSVNDKVVVY------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            + L G +    V++        + R+    Y T    ++ + +     +     T    F
Sbjct: 931  IALAGVAAEFGVIMLIYLNNAIKHRQEKNNYHTVTDLKEALIEGAVMRIRPKAMTVATIF 990

Query: 781  ISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +LP+      G  V+   A PM  G+V A   S+F+   + L IY  + K 
Sbjct: 991  FGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLIYSRQLKK 1043



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/227 (14%), Positives = 85/227 (37%), Gaps = 13/227 (5%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +       L  K +  
Sbjct: 287 GGIIVMRYGENALSTIDAVKAKLEELKAGLPDGVEIIPTYDRSQLILNSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L AI TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAIITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNMK----LYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K+++     +      ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEQFHTEHNREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           P+          FA P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 463 PVFALEAQEGRLFA-PLAYTKSFAMAASALLAITLVPVLMGYFIRGK 508


>gi|51244223|ref|YP_064107.1| cation efflux system protein (CzcA) [Desulfotalea psychrophila
           LSv54]
 gi|50875260|emb|CAG35100.1| probable cation efflux system protein (CzcA) [Desulfotalea
           psychrophila LSv54]
          Length = 1053

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 80/659 (12%), Positives = 180/659 (27%), Gaps = 42/659 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   +++   +I   GL   L     +  LD  P       I                 
Sbjct: 11  KNRVLVLLFTLIIVVAGLWSML-----RIPLDAIPDLSDVQVI---------VFTDYVGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + FAD         +V   L  
Sbjct: 57  SPQVVEDQVTYPLTTAMLAVPYAKTVRGFSFFGMSFVYVIFADGTDLYWARSRVMEALNY 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+  L  +    L    T           +         +           ++       
Sbjct: 117 VSGSLPANVTPTLGPDATGVGWVYQYVLQSDK---HDLQQLRSIQDWFLRYELMSVPGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP++LR    +  ++       NN   G +  +           
Sbjct: 174 EVASIGGFVKQYQVVVDPNKLRAYNISLRQVRRAIQRSNNDVGGRVIEMGETEFMVRGIG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +I                    + +  D  G     +        P        
Sbjct: 234 YIKSLEDIEN------------------IGLGVDSRGTPILIKNIAQVQIGPEIRRGVLD 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     I   +   +    IE        ++ G                 L +   
Sbjct: 276 FNGEGETVGGIVVMRYGENALQVIERVKKRLEEIQPGLPAGVKIEAVYDRSNLILSAVKN 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T    + +V +V  + + + +  LV   ++ + + ++  L+   G    + S+ GI 
Sbjct: 336 LRTTLLEESLIVALVCLIFLAHLRSALVGIITLPIGIFISFILMERQGINANIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREENRKN---QSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + +G  VD+ I++ E + +    +   +S +  +          +F S +   ++ + +F
Sbjct: 396 IAVGAMVDAAIVMIENVHKHMEHDDGRRSHWELVKDASLEVGPALFFSLLIIAVSFLPVF 455

Query: 479 ---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G   +  A T   ++  + F A+++V  +M ++IR K M             I 
Sbjct: 456 ALEAQEGRLFKPLAYTKTYAMAGAAFLAVTLVPVLMGYMIRGKIMPEHKNPINRFLIWIY 515

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVV 594
           D      + A+   V I++L                     +G +         + ++  
Sbjct: 516 DPAIRWALGAKKTVVVIALLLMATVYIPYQRIGSEFMPPLDEGDLLYMPTTLPGISIAKA 575

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           R  ++       SF           R++     +        +V K  ++     T + 
Sbjct: 576 RELVQQTDKIIKSFPEVATVAGKAGRVESATDPAPLSMLETTIVLKPKSQWREGMTTEK 634



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 10/144 (6%)

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV-------YDRMR 745
            +L  + ++   +   L    L G   ++      + L G +    VV+       Y + R
Sbjct: 887  SLIVMLSVPFSLVGGLWLMDLLGYNMSVAVAVGFIALAGVATETGVVMLIYLDISYRQYR 946

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
            +      +       I++   + +   + T +A    + P+      G  V+   A PM 
Sbjct: 947  EKFGERFSKAHLEQAIEEGAAQRVRPKIMTVVAIIAGLAPIMWSSGTGSEVMKRIATPMI 1006

Query: 803  FGIVVAASSSIFIAAPILLFIYDW 826
             G++ +   ++FI   +  +    
Sbjct: 1007 GGMLSSTLLTLFILPVVYGWWRGR 1030


>gi|119776607|ref|YP_929347.1| CzcA family heavy metal efflux protein [Shewanella amazonensis
           SB2B]
 gi|119769107|gb|ABM01678.1| heavy metal efflux pump, CzcA family [Shewanella amazonensis SB2B]
          Length = 1048

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/527 (12%), Positives = 149/527 (28%), Gaps = 45/527 (8%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           ++++  M+   G+       L ++ LD  P       I                     V
Sbjct: 16  VLVVALMVTLWGI-----TELKRTPLDALPDLSDVQVI---------IKTSFPGQAPQLV 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +          +              + + + F D         +V  +L  V ++L
Sbjct: 62  EEQVTYPLSTAMLAVPGAKTVRGFSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQVRTRL 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
               + +L    +                     +           ++   E   +    
Sbjct: 122 PAGVEPSLGPDASGVGWVYEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVEGVSEVATV 180

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +        +P +L       A +       N+   G +  +         +   +  
Sbjct: 181 GGMEQTYQIVLEPDKLAIYKLDIATIKAAITRANSEAGGSVVEMAEAEYMVRAKGYRQTL 240

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +   I L   T    P   K V  I       R   E+  +                  
Sbjct: 241 DDFREIPLGITTGAGTPLLLKDVATIRKGPASRRGIAELDGE-----------------G 283

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   I   +   +   TI+        L+AG       +           S        
Sbjct: 284 EVVGGIIVMRYGENALATIDAVKAKLDELKAGLPDGVEIVPTYDRSQLIQNSVDNLLTKV 343

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V +V  + +L+ +  LVA F++ L++++   +++ +G    + S+ GI + IG 
Sbjct: 344 VEEMLVVGLVCLLFLLHARSTLVAVFTLPLSILIAFIVMNHMGINANIMSLGGIAIAIGA 403

Query: 427 AVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDSNITALIATVV 476
            VD  I++ E + +     +            +  +          +F S +   ++ + 
Sbjct: 404 VVDGAIVMIENLHKHLEHFKRQHEREPSTREHWEVVTQASLEVGPALFFSLLIITLSFIP 463

Query: 477 LF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +F      G      A T   ++  +   AI++V  +M + IR K  
Sbjct: 464 VFALEAQEGRLFAPLAYTKTFAMAAASVLAITLVPVLMGYFIRGKIP 510



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 75/241 (31%), Gaps = 10/241 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            NL  +QI D            +  +      +     +         E+        +  
Sbjct: 800  NLADIQISDGPPMLKSENGRLISWVFVDIQGTSIGEYIQTAKSALEAELNLPPRYSYSFA 859

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALFG 715
               +  + +  K    V ++   + I + + F     A   + +L   +  +     L  
Sbjct: 860  GQYEYMQRVDAKLKQVVPLAIGIIFILLMLTFGSGKQASMIMLSLPFALVGSTWLLYLLD 919

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETL 769
               ++     ++ L G +    VV+        + R  +  Y      +  + +     +
Sbjct: 920  YNLSVAVAVGMIALAGVAAEFGVVMLVYLNNAIKDRDALGHYHNESDLKAALVEGAVMRI 979

Query: 770  GRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                 T    F  +LP+      G  V+   A PM  G+V A   S+F+   + L +Y  
Sbjct: 980  RPKAMTVATIFFGLLPIMWGAGSGNEVMQKIAAPMVGGMVTAPLLSLFVLPALYLLVYRK 1039

Query: 827  R 827
            R
Sbjct: 1040 R 1040



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/227 (14%), Positives = 85/227 (37%), Gaps = 13/227 (5%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    L+ +K  + + V +    +   +       L+ K +  
Sbjct: 287 GGIIVMRYGENALATIDAVKAKLDELKAGLPDGVEIVPTYDRSQLIQNSVDNLLTKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L A+ TL L I          GI  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAVFTLPLSILIAFIVMNHMGINANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFR-------DLIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K+++ +              +++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEHFKRQHEREPSTREHWEVVTQASLEVGPALFFSLLIITLSFI 462

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           P+          FA P+A+    A +++  +A  ++  +  +  +  
Sbjct: 463 PVFALEAQEGRLFA-PLAYTKTFAMAAASVLAITLVPVLMGYFIRGK 508


>gi|312134546|ref|YP_004001884.1| protein-export membrane protein secd [Caldicellulosiruptor
           owensensis OL]
 gi|311774597|gb|ADQ04084.1| protein-export membrane protein SecD [Caldicellulosiruptor
           owensensis OL]
          Length = 415

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E  +  +   II  + + +++ I ++    L A   L+  I   +       
Sbjct: 230 AIGPSLGNEAFKSTLKAGIIGILLVFLFMIIFYRLP-GLVADIALVAYIVILVAIVGYAK 288

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I   L  +A ++   G +V+  ++++ R+++ ++   +  + R  +D      L   + +
Sbjct: 289 ITLTLPGIAGIILSAGMAVDANILIFARLKEELR---SGKTLRAAMDAGFRRALNAVIDS 345

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++   I+ + +   G   I  FA  +  GIVV+  ++I +   +L
Sbjct: 346 NVTTIIAGIVLLFLGTGPIKGFAWTLTIGIVVSFFTAITVTRFLL 390



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 122/407 (29%), Positives = 215/407 (52%), Gaps = 28/407 (6%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              +K +      K    ++ +   +      +E ++++IR R+D     ++T    GS 
Sbjct: 35  PSVQKVIRYGLDLKGGVYIVYEAAKENPTKREMESALQLIRTRLDMRNFYDATATIQGSK 94

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI +++PG +DP    Q +G TA + F                                +
Sbjct: 95  RIRVEIPGVKDPDEAIQYIGRTALIEF--------------------------KGPSGDL 128

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +SG ++    A         VV + FD+ G ++F E T+  +G+ + + LDG++++ PV
Sbjct: 129 IVSGRNVVD--AYAQQTASGYVVALKFDKEGTKKFAEGTKKYLGQNIGIYLDGKLISNPV 186

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I +G+A I G   +E A  LA  ++AG+LP  LN++E + +G  LG+++      A
Sbjct: 187 VQAEIDNGEAVIEGMKNLEEAKTLAQQIKAGALPFALNVIESKAIGPSLGNEAFKSTLKA 246

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + G++L+ LFMI+ Y   GLVAD ++   +++ +A++     TLTLP IAGI+L  G+A
Sbjct: 247 GIIGILLVFLFMIIFYRLPGLVADIALVAYIVILVAIVGYAKITLTLPGIAGIILSAGMA 306

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+NIL+  R++EE R  +++  ++D GF RA + + DSN+T +IA +VL F G G ++G
Sbjct: 307 VDANILIFARLKEELRSGKTLRAAMDAGFRRALNAVIDSNVTTIIAGIVLLFLGTGPIKG 366

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           FA T+ + I++S FTAI++ R ++  II     K +      +   +
Sbjct: 367 FAWTLTIGIVVSFFTAITVTRFLLTSIINTGLFKDVRWYGGKKTREV 413



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 1   MRNNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N      L   ++      I       +      PS   +  I  GLDL+GG ++V E
Sbjct: 1   MQNKNLAKFLIGCLVIAFAFYIVFFGL--EIGTASIPSV--QKVIRYGLDLKGGVYIVYE 56

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
             +++     ++     +R+ L        +     + +I +     +  +     +   
Sbjct: 57  AAKENPTKREMESALQLIRTRLDMRNFYDATATIQGSKRIRVEIPGVKDPDEAIQYIGRT 116

Query: 119 L 119
            
Sbjct: 117 A 117


>gi|269124389|ref|YP_003297759.1| MMPL domain-containing protein [Thermomonospora curvata DSM 43183]
 gi|268309347|gb|ACY95721.1| MMPL domain protein [Thermomonospora curvata DSM 43183]
          Length = 724

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/504 (12%), Positives = 154/504 (30%), Gaps = 54/504 (10%)

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA---VDS 430
           L+VL ++        +   +  L V   + L++L     T+      ++ +      VD 
Sbjct: 202 LVVLVLLFGSLLAAALPLLTAALAVGGAVGLIALASHVFTVADFTPPIMMLVGLGVGVDY 261

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAI 490
            +L+  R R E         +  +    A  T+F +  T ++A + L   G G+++G A+
Sbjct: 262 ALLIFHRYRHELIGGADRDEATRIALEAAGRTVFFAGCTVIVALLGLVALGLGSLQGVAL 321

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKM---KSIDINPLSRFFLIPDCIAIQFMRARF 547
            + L++L++M  +++++ A++       +    K                 AI     R 
Sbjct: 322 AVALTVLVTMAASLTLLPALLAVFGGRIQRLVLKRAAKAHAKGRVEGRGWRAIATAVQRR 381

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQ------------------------LGV 583
               + +              +  G    G                           + V
Sbjct: 382 PLAALLVAVVALLALAAPALDMRLGFADAGTDSPESTSRRAYDLLAEGFGPGFNGPLIVV 441

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKN---FLVRLQYQPGDSVAQTRVLEMVKK 640
            A  P     +R+ L        +             ++              ++  +++
Sbjct: 442 SAGEPAAAQELRAALAGTPGVAATTPPLPARDGALSTVIVFPKTAPQDEGTAELVRTLRQ 501

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKG-------IVGVIISAIAMLIYIWIRFKWYFA 693
            +   +   T     + G   + +   +         V +++   A L+ + +       
Sbjct: 502 DVLPPLAERTGARYLVGGSTAAAQDFAESVAARMPLFVAIVVGLSA-LLLMAVFRSLLIP 560

Query: 694 LGAITTLILDITKTLGFFAL------FGIEFNLT----AVAAVLTLIGYSVNDKVVVYDR 743
           L A    +L I  +LG           G +         V     + G S++ +V +  R
Sbjct: 561 LKAALLNLLSIAASLGVITFVFQDGRLGAQPGPIEAFIPVMIFAIVFGLSMDYEVFLLSR 620

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           + +  +    +      + + +  T       +    +      +    ++  F + +A 
Sbjct: 621 IHEEWR---RTQDHSHAVREGLTATGRVITAAAAIMIVVFAAFILSPSRMLQQFGLGLAV 677

Query: 804 GIVVAASSSIFIAAPILLFIYDWR 827
            I++ A     +  P  + +   R
Sbjct: 678 AILLDAVVIRCLIVPAAMQLLGRR 701



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 14/125 (11%), Positives = 42/125 (33%), Gaps = 5/125 (4%)

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              L        +F       +L  +G  V+  ++++ R R  +          +    +
Sbjct: 232 LIALASHVFTVADFTPP--IMMLVGLGVGVDYALLIFHRYRHELIG---GADRDEATRIA 286

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
           +        +      +++L +   G   +   A+ +A  ++V  ++S+ +   +L    
Sbjct: 287 LEAAGRTVFFAGCTVIVALLGLVALGLGSLQGVALAVALTVLVTMAASLTLLPALLAVFG 346

Query: 825 DWRAK 829
               +
Sbjct: 347 GRIQR 351


>gi|242281259|ref|YP_002993388.1| acriflavin resistance protein [Desulfovibrio salexigens DSM 2638]
 gi|242124153|gb|ACS81849.1| acriflavin resistance protein [Desulfovibrio salexigens DSM 2638]
          Length = 1054

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/563 (10%), Positives = 165/563 (29%), Gaps = 35/563 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   ++ I++ ++  +G+       +    ++R+P+      +  G          L  
Sbjct: 9   LKQTVFINIIFILLMIVGVFS-----MTDLPVERYPNVHMGKVVISGF---------LPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    ++    L+          + ++ I + F D        D++   + 
Sbjct: 55  ASPSDVEALVTKKIEDALDDLENVEYIRSRSFRERSSIMVKFLDDTDYAKGYDELRFRVL 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L  +      +     E   V+    +    + A+     +  +   Q+      
Sbjct: 115 SIQNDLPREMDPPTFMEINVSEWLPVIRVCLVGDRANRALSM---MADEMKVQLRKIPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +         +     DP +L +   T   ++      N S     F            
Sbjct: 172 NEVEVEGEYTREFHVNLDPHKLVRFKLTFDDVARALADANISIPAGDFSAA--------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G ++      F  +       +  D  G+         +           
Sbjct: 223 ---------GGEYVIVVDERFRTREEIAETIVRMDGDGSFVTVGDVLSDARVSYRDPQVI 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                +     E    ++   ++      + +V   +    +    
Sbjct: 274 TSINGRNAVTLKVVKSLDGNAVTIAEEVEKISDSFKSALEKEGVELVLTSDQRLHIEDAI 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
              G   +V  +++ V+  +V+  +  ++    +    ++T+ ++ L G +L   ++   
Sbjct: 334 NTLGMNLLVGIVLVFVVIYLVMGFRNAMLTTIGVPFAFLVTMIIMKLTGNSLNQITLFSF 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  G+ VD  I+V E I    ++ + +  ++  G S  +  +  +  T + A + +   
Sbjct: 394 VLVSGIIVDDAIVVVENIFRHVQEGKPLKEAVIDGTSEVFLPVVSATATTVAAFLPMLIM 453

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G     FA          + + I  +  +    + +   K +  N             +
Sbjct: 454 SGSTGEFFAQVPKAVTFALIASLIECLLILPPHFLDWPGAKGLMKNREKHSREPAFMRPL 513

Query: 541 QFMRARFWGVGISILFSICSICL 563
           +    +F  V     F   ++  
Sbjct: 514 RRWTDKFLSVVARFRFISLTVVF 536



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 85/264 (32%), Gaps = 17/264 (6%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDG-EKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
           V  +       V   L   ++     Q          V L+           + E V+K 
Sbjct: 245 VRMDGDGSFVTVGDVLSDARVSYRDPQVITSINGRNAVTLKVVKSLDGNAVTIAEEVEKI 304

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGI----VGVIISAIAMLIYIWIRFKWYFALGAI 697
                     +  E+V     R  I   I    + +++  + + + I++   +  A+   
Sbjct: 305 SDSFKSALEKEGVELVLTSDQRLHIEDAINTLGMNLLVGIVLVFVVIYLVMGFRNAMLTT 364

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             +      T+    L G   N   + + + + G  V+D +VV + +    +        
Sbjct: 365 IGVPFAFLVTMIIMKLTGNSLNQITLFSFVLVSGIIVDDAIVVVENI---FRHVQEGKPL 421

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGIVVAASSSIF 814
           ++ +    +E     V  +     + LPM +  GS    FA     + F ++ +    + 
Sbjct: 422 KEAVIDGTSEVFLPVVSATATTVAAFLPMLIMSGSTGEFFAQVPKAVTFALIASLIECLL 481

Query: 815 IAAPILLFI------YDWRAKNAR 832
           I  P  L           R K++R
Sbjct: 482 ILPPHFLDWPGAKGLMKNREKHSR 505



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 93/241 (38%), Gaps = 13/241 (5%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            S+ +    F  F  ++   +    + G  ++    + MV K    +            G 
Sbjct: 813  SIYMEPGQFNRFMSQRAVTITANIKSGSRLSSPAAVNMVSKFYDSVRTEYPGATVNFSGE 872

Query: 660  K-ISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI-TKTLGFFALFGI 716
               +R+     +   + + + + + +  +F  +   +  ++ +I  +    LG F     
Sbjct: 873  YESTRKSYTSLVYAFMTAILIIYLILATQFQSYAQPVIILSAVIFSLTGVILGTF-FSQT 931

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             F + +  A + + G  VND +V+ D M    KLY + +  +  + + +   L   + T+
Sbjct: 932  IFTVNSFIATVGVTGVVVNDSLVLLDFMN---KLYKSGMDRKAAMREGVRIRLRPILLTT 988

Query: 777  MAAFISVLPMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAP---ILLFIYDWRAKN 830
            +   + +LPMAV +    +     A     G+  A   ++FI      +L+   +WR K 
Sbjct: 989  LTTTLGLLPMAVGFPSYSLVWGAMASTFVTGLCTATFLTLFIIPIEWDLLMGFMEWREKR 1048

Query: 831  A 831
             
Sbjct: 1049 K 1049



 Score = 38.5 bits (87), Expect = 5.0,   Method: Composition-based stats.
 Identities = 47/550 (8%), Positives = 136/550 (24%), Gaps = 47/550 (8%)

Query: 3    NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++ +       I  L  L   +   +        P +     ++L G     +EV  
Sbjct: 526  RFRFISLTVVFGAFISALFILGVSISGKLPLIKIKFFPDDYSLYYIELEGPVATPIEVTS 585

Query: 63   DDF--VNGFLQMY------SDELRSFLKKEGIGVFSMRQIQNKITLSFA----------D 104
            D    ++ F++        S    +   +              I +              
Sbjct: 586  DKLKRISVFVEKMGPGMAKSATAFAGFYQNEDYEMVHGSNLGNIVVELPAKDKQIFADAP 645

Query: 105  SRFKENIADKVT---LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIE 161
                    + +               V P+K+      +  I I+ + +   + ++ AI 
Sbjct: 646  ENDPGAHLEFMRKELEKFAETGWTFRVRPEKDGPPAGKDINIRILGADHGSVKGLTAAIM 705

Query: 162  QSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNN 221
            + ++   +    +                     E    R+ +   T  +++        
Sbjct: 706  KFIKDNDKLGPHL-----VNLATDDGTPNRIFRFEPINERVAEYGLTPKQVA-------- 752

Query: 222  SKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR 281
                           DG         +            +       +     +   +  
Sbjct: 753  --------GLSGSVLDGRFVGEFRLSDEDVDLRLKIDPQYLNTPEDALSVPVLEHNESPV 804

Query: 282  FFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
                  D          +  +    V   A     +++S    +         +R     
Sbjct: 805  RIGDICDVSIYMEPGQFNRFMSQRAVTITANIKSGSRLSSPAAVNMVSKFYDSVRTEYPG 864

Query: 342  IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
              +N   E        +  +Y    AI+   +++            +++     L  ++ 
Sbjct: 865  ATVNFSGEYESTRKSYTSLVYAFMTAILIIYLILATQFQSYAQPVIILSAVIFSLTGVIL 924

Query: 402  LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYS 461
                S    T+   S    V   G+ V+ ++++ + + +  +       ++  G      
Sbjct: 925  GTFFSQTIFTVN--SFIATVGVTGVVVNDSLVLLDFMNKLYKSGMDRKAAMREGVRIRLR 982

Query: 462  TIFDSNITALIATVVLFFFGGGAVRGFAI---TMGLSILISMFTAISIVRAMMIFIIRYK 518
             I  + +T  +  + +          +     T    +  + F  + I+      ++ + 
Sbjct: 983  PILLTTLTTTLGLLPMAVGFPSYSLVWGAMASTFVTGLCTATFLTLFIIPIEWDLLMGFM 1042

Query: 519  KMKSIDINPL 528
            + +       
Sbjct: 1043 EWREKRKMQR 1052


>gi|320107553|ref|YP_004183143.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
 gi|319926074|gb|ADV83149.1| acriflavin resistance protein [Terriglobus saanensis SP1PR4]
          Length = 1055

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/551 (11%), Positives = 162/551 (29%), Gaps = 41/551 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++   +I  +G+     + L  +  D FP+                         
Sbjct: 10  RPYTFIVTSILIVVLGI-----SALVHTPTDIFPNIDIPQVT---------IIWTYSGLP 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +  +S+ + + +              + I +SF      +    ++   +  +
Sbjct: 56  PKEMEQRITTFSEFVLANVNDIKAVDSQTTIGASVIKVSFQPQVRIDAAISQIGAAVNSI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++  +   + I+    + D +    +      + +   QI     T+ 
Sbjct: 116 RFRMPPSVNPPWILRFSADSVPIIQLSLSSDSLSESEL--YDFGLFRVRQQISKVPGTLL 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  + D + L+    T   ++      N +       V     +      
Sbjct: 174 PAPYGGVARQIMVDLDQNALQAKGLTPVDVTNAINAQNLTIPSGTAKVGETEYTVSTNSS 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D + +                     D+   ++     +     N+    +V  +   
Sbjct: 234 PLDALTL--------------------NDVPVRQVNGSMVYMRDVANVRDGWSVQQNVAR 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILA-AMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                           +S    ++          RA +                  S   
Sbjct: 274 ANGKPAVLLTIMKVGAVSTLDIVKKIKDDVLPASRAIAPKGLQIRALFDQSIFVKASIFG 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                AI A L  +++ + +   +  ++   SI L+++ ++ +LS LG T+   ++ G+ 
Sbjct: 334 VLREGAIAASLTALMILLFLGSWRSTVIIAISIPLSILSSIIVLSALGETMNTMTLGGLA 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ VD   +  E I       Q +  ++ +G S   +  F S +T  I  V + F  
Sbjct: 394 LAIGILVDDATVTIENIHRHME-GQPLREAVLIGASEIATPTFVSTLTICIVFVSVVFLT 452

Query: 482 G---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G         A+ +  +++ S   + ++V  ++ +++  +                P   
Sbjct: 453 GPAKYLFTPMALAVVFAMMASYLLSRTLVPVLVHYLLGAEHEFEGHNVHEEPNQKAPSLF 512

Query: 539 AIQFMRARFWG 549
                +     
Sbjct: 513 RRINEKFNHLY 523



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 57/152 (37%), Gaps = 6/152 (3%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +  S  A++I +     W   +    ++ L I  ++   +  G   N   +  +   IG
Sbjct: 339 AIAASLTALMI-LLFLGSWRSTVIIAISIPLSILSSIIVLSALGETMNTMTLGGLALAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V      +N+  +      R+ +    +E    +  +++   I  + +    G
Sbjct: 398 ILVDDATVTI----ENIHRHMEGQPLREAVLIGASEIATPTFVSTLTICIVFVSVVFLTG 453

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F  PMA  +V A  +S  ++  ++  +
Sbjct: 454 PAKYLF-TPMALAVVFAMMASYLLSRTLVPVL 484



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 85/290 (29%), Gaps = 11/290 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
             V  +                           L         ++     L ++     + 
Sbjct: 766  AVQPNFWLDPKMGITYTVAAQTPQYQINSINALENTPIPIHTVADRTELLSNMSTLTPAV 825

Query: 609  QNFDGE--KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
               +        V   +   +      V   + + + E            V  ++     
Sbjct: 826  MPVNINHHNTAPVFDVFANVEDRDLGSVAANINRIVKEESAHLPAGTVIAVRGQVESMNE 885

Query: 667  RKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
              G +G+ ++  A+L+Y+ +      W      I  L       +    L    F++ ++
Sbjct: 886  AFGRLGLGLAFAALLVYLLMVVNYQSWIDPFIIICALPGAFCGIVWALFLTQTTFSVPSL 945

Query: 724  AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
               +  IG +  + +++      N         FR  +       L   + T+ A  I +
Sbjct: 946  MGAIMSIGVATANSILLVT--FANQLRDQGETPFRAAVTAGYTR-LRPIIMTAFAMIIGM 1002

Query: 784  LPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            LPMA+    GG      A  +  G+ +A  +++F    +   I+   +K 
Sbjct: 1003 LPMALGIGEGGEQNAPLARAVIGGLGMATFATLFFVPLMFTLIHGNTSKQ 1052


>gi|330945485|gb|EGH47035.1| multidrug/solvent transporter [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 248

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 25/254 (9%), Positives = 64/254 (25%), Gaps = 16/254 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  ++  +I  +G L           ++++PS  P            G  +      
Sbjct: 8   RPIFAWVIALVIMLVGALSI-----SSLPINQYPSIAPPAI---------GIQVTYPGAS 53

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQG 121
              V   +    ++  + +              +  IT +F      +    +V   L  
Sbjct: 54  AQTVQDTVVQVIEQQLNGIDNLRYVSSESNSDGSMTITATFNQGTNPDTAQVQVQNKLNL 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L  + ++  +  T   +  +++     +       + +  I+    D I  +    
Sbjct: 114 ATPLLPQEVQQQGIRVTKAVKNFLMVIGLVSEDGSMGKEDLANYIVSNMQDPISRTSGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    DP++L     T   +       N        G            
Sbjct: 174 DFQVFGSQ-YAMRIWLDPAKLNNFQLTPVDVKNAITAQNVQVSSGQLGGLPSISGQQLNA 232

Query: 242 LVEDKVEISGIHLN 255
            +  K  +     +
Sbjct: 233 TIIGKTRLQTAEQS 246


>gi|124266528|ref|YP_001020532.1| putative RND efflux transporter [Methylibium petroleiphilum PM1]
 gi|124259303|gb|ABM94297.1| putative RND efflux transporter [Methylibium petroleiphilum PM1]
          Length = 1028

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 68/556 (12%), Positives = 151/556 (27%), Gaps = 46/556 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V+L   +   G++        Q  +   PS                  + +   
Sbjct: 9   RRPVMTVLLNLAMVVAGVIA-----YRQIPIAALPSYNTPV-------------INVTAS 50

Query: 62  EDDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   +        ++  S +    +   +       +TL F + R  +  A  V  
Sbjct: 51  LPGASPETMATSVALQLEKQFSTIPSLSMISSTSTLGTTSLTLEFDEGRDIDAAAVDVQA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L      L  D              + VL    +     +  + +          +   
Sbjct: 111 ALLRAERTLPQDMTAPPSYRKVNPADAPVLL-MAMTSPSLNLSDLNDYAEHLISPALSTL 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q     +    +     P  L        ++S      N +             + 
Sbjct: 170 PGVAQVNIFGQRRFAVRVRVHPQALAARDIAIEELSAALATANANTPVGTLEGDRQTLTV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                + +  E S                    D+                 +      V
Sbjct: 230 QANRQLRNAAEFS--------------------DLIVSSKNGNTVRLRDVATVEDSYESV 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                             +   +    ++          A         +      +   
Sbjct: 270 KTSANFNGEASITLAVQRQPDANTVAVVDAVKAALPGFTAQLPQSIQLSLLNDRSTSIRE 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +      T      LV++V+F+ +      ++   S+ +++I  +ALL   G +L   S+
Sbjct: 330 ALHDVNLTLLGTIVLVVLVIFLFLRRAVATVIPTLSLPVSLIGAVALLWAGGYSLDNISL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +GL VD  I++ E I     +    F +   G      TI   + + +   + +
Sbjct: 390 LGLTLAVGLVVDDAIVMLENIMHHVEQGMDPFEAALKGSREVGFTIISISTSLVAVFIPI 449

Query: 478 FFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           FF  G        FA+ + L+IL+S F ++++V  +    ++ +  +      +  F   
Sbjct: 450 FFMPGVIGLLFHEFAVIVSLAILVSAFVSLTLVPMLAGRYLKPEATQRPPGALVRGFERG 509

Query: 535 PDCIAIQFMRARFWGV 550
            + +   + R+    +
Sbjct: 510 FEAVTRWYTRSLDLAL 525



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/255 (10%), Positives = 80/255 (31%), Gaps = 14/255 (5%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +++++  +   +R         +    + +      + L  Q         V++ VK  +
Sbjct: 245 IVSSKNGNTVRLRDVATVEDSYESVKTSANFNGEASITLAVQRQPDANTVAVVDAVKAAL 304

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKG----IVGVIISAIAMLIYIWIRFKWYFALGAIT 698
                         +    S  +        +  +    + +L+      +    +    
Sbjct: 305 PGFTAQLPQSIQLSLLNDRSTSIREALHDVNLTLLGTIVLVVLVIFLFLRRAVATVIPTL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           +L + +   +      G   +  ++  +   +G  V+D +V+ + +   M      +   
Sbjct: 365 SLPVSLIGAVALLWAGGYSLDNISLLGLTLAVGLVVDDAIVMLENI---MHHVEQGMDPF 421

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
           +   K   E     +  S +     +P+    G +      FA+ ++  I+V+A  S+  
Sbjct: 422 EAALKGSREVGFTIISISTSLVAVFIPIFFMPGVIGLLFHEFAVIVSLAILVSAFVSL-- 479

Query: 816 AAPILLFIYDWRAKN 830
              ++  +     K 
Sbjct: 480 --TLVPMLAGRYLKP 492



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 70/181 (38%), Gaps = 8/181 (4%)

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFF 711
               G   +     +G   ++I A  ++IY+ +      +   L  +  L       L   
Sbjct: 838  TSYGGDAAVFKTSQGSQAILIVAALLVIYVLLGVLYESYIHPLTILAGLPSAAVGALLML 897

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              FG +  L A   +L LIG    + +++ D      +     ++    I ++       
Sbjct: 898  EFFGQDLTLIATIGILLLIGIVKKNAIMMIDFALDAQRH--QGMAPEAAIREACVRRFRP 955

Query: 772  SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               T++AA +  LP+A+    G  +     + +  G++ + + ++++   I L++  +  
Sbjct: 956  ITMTTLAALMGALPIALGIGAGAELRQPLGLAVVGGLLFSQAITLYLTPVIYLYLDRYSG 1015

Query: 829  K 829
            +
Sbjct: 1016 R 1016


>gi|119471953|ref|ZP_01614238.1| RND family efflux transporter [Alteromonadales bacterium TW-7]
 gi|119445211|gb|EAW26502.1| RND family efflux transporter [Alteromonadales bacterium TW-7]
          Length = 1026

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 79/590 (13%), Positives = 188/590 (31%), Gaps = 31/590 (5%)

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    +   + +           +   +I + F      +N A++    +  
Sbjct: 62  SPETVDTEVTSKLEGAIARVSGVKSIRAQSEEGNARIVVEFRPGVDLDNAANETRESVAR 121

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L  + ++  ++       ++V    + + +   A+ + +E       Q        
Sbjct: 122 VQRELPEEVERVAIIKADNDAEAVVSLTVSSNSLALEALTERVETD--LAPQFLTIPGVA 179

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      L    DP +L     T   ++                    +       
Sbjct: 180 DVRLNGDRKRVLRVRLDPLKLSSFNLTIPDVADVLREAPFDVPAGSLKSSDQQVIVRADA 239

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E++ I ++G T                              ++    A      
Sbjct: 240 TSITPNEVADIIVSGDT------------------------RVGDIASVYFGPADPRSMV 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L    +       +AQ +     +    L   +R     ++  +    +      S   
Sbjct: 276 RLDGKPVIGMEVIRQAQSNTIEISDEVLQLLENMRERFPELEFTLTS-DDAQFIRSSVDE 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +   LV+I L++ +   +  LV  F+I +  I +LAL+  LG ++ + ++  +V
Sbjct: 335 VINSLVLTVLLVVITLWVFIGSWRATLVPAFAIPVAFIGSLALIWALGFSINILTLLALV 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V+E I+ +         S  +G    +  +  +        + + F  
Sbjct: 395 LATGLIVDDAIVVSENIQRQRGLGLGRRASAVIGTREVFFAVVATTAVLAAVFIPIAFLP 454

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R F   +  +++IS F A+S+V A+   +   K+        +    +    I
Sbjct: 455 STAGRLFREFGGVLAGAVIISSFVALSLVPALTSKLKLKKQSNH-PFAKVGNKLVRLYSI 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
            I+ +  R W V I+ +        L+ +  N  +  +   ++ + A  P  + +   + 
Sbjct: 514 TIKSVLNRAWLVLIACILIAFGSGALYLNLDNELLPTEDRGKIRIFARGPDGVGLNFMDR 573

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +++Q+ DI     +  +   +       D       + +      +    
Sbjct: 574 QAMQMEDILLPFVESGEIESIYTVVGQWDPNIVFITVPLKHWDDRQFSQQ 623



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 67/162 (41%), Gaps = 7/162 (4%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + +L+ +  +F+    A+  + T+   IT  +    L     N+ +   ++ LIG 
Sbjct: 854  VLAFLIVLLVLAAQFESVNSAIVVMLTVPFGITSAILALYLTNTSLNIYSQIGLVMLIGL 913

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ +      +L    +S R+ ++++    L     T ++  +  LP+ +    
Sbjct: 914  IAKNAILLVEFA---DQLRDQGLSVREAVEEAALVRLRPITMTLVSTLLGALPLILSSGA 970

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G     +    +  G+ +A   ++++   I L +  +     
Sbjct: 971  GAEARNAIGWVVFGGLSLAVLFTLYLTPVIYLGLARFTKPRG 1012



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%), Gaps = 6/145 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L     + +    +L      G   N+  + A++   G  V+D +VV + +    
Sbjct: 356 SWRATLVPAFAIPVAFIGSLALIWALGFSINILTLLALVLATGLIVDDAIVVSENI---Q 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +     +  R        E     V T+       +P+A      G +   F   +A  +
Sbjct: 413 RQRGLGLGRRASAVIGTREVFFAVVATTAVLAAVFIPIAFLPSTAGRLFREFGGVLAGAV 472

Query: 806 VVAASSSIFIAAPILLFIYDWRAKN 830
           ++++  ++ +   +   +   +  N
Sbjct: 473 IISSFVALSLVPALTSKLKLKKQSN 497


>gi|330997195|ref|ZP_08321048.1| heavy metal efflux pump, CzcA family [Paraprevotella xylaniphila
           YIT 11841]
 gi|329570990|gb|EGG52697.1| heavy metal efflux pump, CzcA family [Paraprevotella xylaniphila
           YIT 11841]
          Length = 1030

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 78/680 (11%), Positives = 193/680 (28%), Gaps = 49/680 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N  ++++   ++   GL  A    +        P+ +            GG       
Sbjct: 10  LQNRLFILMASILLMIGGLYQAYHTEVDVFPDLNAPTVVVMTE-------AGGM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPIETAVNGATSVRRVRSSSTTGFSVVWVEFDWDTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  +     L   +     +++     D      ++           ++  +   
Sbjct: 116 TVAESLPDNVGNPTLGPQSSILGELLIVGLTADSTSM--LDLRTLADWVIRPRLMSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +      P R++    T  ++       N +  G +          GN+
Sbjct: 174 AQVAVLGGDIKEYQILLHPERMKHYGVTLGEVMEVTRNMNTNTNGGVI------YQYGNE 227

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+V   V    +   G  A            I           ++     G     +   
Sbjct: 228 YIVRGVVSTDDVRKMGRAA------------IKTVGGSPVTLEDIADVRTGSQQPKLGLA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P +   +       +   T +    L  + ++    + ++    R       S  
Sbjct: 276 SEKGKPAVLLTVTKQPNTGTIELTGKLEEALQDLQKSLPADVHVSTDVFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +    A  V+IVLF+ +   +  +++  ++ L++++T+ +L  +G T+   S+ G+
Sbjct: 336 NVQDSLLEGAIFVVIVLFLFLGNVRTTVISLVTLPLSLLVTILVLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+ +  S        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVWKHLRENRMLPESERLRVRDVVFNASREVRMPILNSTLIIIV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM----KSIDI 525
           + V LFF  G   R      +   +S+  S   A+++   +  +++ +K           
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGVAFIVSLFASTIVALTLTPVLCSYLLGHKAKTGGLPKEAF 515

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
             +       + ++      +        LF       L           +G   + + +
Sbjct: 516 LAVYLKKHYQNGLSWALSHKKIVLGTTLTLFVAALGSFLTLGRSFLPPFNEGSFTINISS 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              + L          +   +S            R +            +E   +     
Sbjct: 576 LPGISLEESDKIGRQAEELLLSIPEIKTVARKTGRAELDEHALGVNVSEIEAPFELEDRS 635

Query: 646 VPLSTIQNTEIVGPKISREL 665
                      +       +
Sbjct: 636 HTEVLEDVRHKLSVISGANI 655



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 94/273 (34%), Gaps = 11/273 (4%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS--V 629
            +   G   +  +   PV L  +       Q   +   +  G+   L+ +  QP      
Sbjct: 238 DVRKMGRAAIKTVGGSPVTLEDIADVRTGSQQPKLGLASEKGKPAVLLTVTKQPNTGTIE 297

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRF 688
              ++ E ++     +     +        +     I      ++  +   +++      
Sbjct: 298 LTGKLEEALQDLQKSLPADVHVSTDVFRQSRFIESSIGNVQDSLLEGAIFVVIVLFLFLG 357

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---- 744
                + ++ TL L +  T+      G+  N  ++  +   IG  V+D +V  + +    
Sbjct: 358 NVRTTVISLVTLPLSLLVTILVLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVWKHL 417

Query: 745 RKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIP 800
           R+N  L  +  +  RD++  +  E     + +++   +S +P+    G    ++    + 
Sbjct: 418 RENRMLPESERLRVRDVVFNASREVRMPILNSTLIIIVSFVPLFFLSGMEGRMLVPLGVA 477

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               +  +   ++ +   +  ++   +AK   +
Sbjct: 478 FIVSLFASTIVALTLTPVLCSYLLGHKAKTGGL 510



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 98/266 (36%), Gaps = 18/266 (6%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            +    +  + N  +D +       S      S    +      V+ +     + +   + 
Sbjct: 770  ENRSTMEHIRNLMIDDAQGNKVPLSYVADIRSSMGPNTINRENVKRKIVISANASGRDMR 829

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWY-F 692
             +V    + I     +     +      E        +++      ++I++ + F++   
Sbjct: 830  SVVNDIRSRIDEKVKLPEGYHIEYGGQFESEESASRVLLLTSFISIVVIFLLLYFQFRNA 889

Query: 693  ALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKN 747
            A   +  L L +    G FAL     E ++ A+   ++L G +  + +++       R+ 
Sbjct: 890  AQSGVILLNLPLALIGGVFALLLTTGEISIPAIIGFISLFGIATRNGMLLISHYNTLREE 949

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAF 803
                   +S R+ I     + L   + T++++ ++++P+A+     G+ I S  A  +  
Sbjct: 950  ------GLSLRESILHGSLDRLNPILMTALSSALALIPLALRGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAK 829
            G++ +   + FI   I  ++     +
Sbjct: 1004 GLLTSTFLNAFIIPIIYEWMNRKSVR 1029


>gi|325528634|gb|EGD05723.1| CzcA family heavy metal efflux protein [Burkholderia sp. TJI49]
          Length = 810

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 66/562 (11%), Positives = 152/562 (27%), Gaps = 48/562 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L   ++   GL         ++ LD  P       I                  
Sbjct: 12  NRFLVLLATVLVTGWGLYSVA-----ETPLDALPDLSDTQVI---------IKASYPGKA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +          +                + + F D   +     +V  +L  V
Sbjct: 58  PQVIEDQVTYPLTTTLLGVPGAKTIRAYSSFGDAFVYVLFDDKTDQYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L      +L    T                     +           ++       +
Sbjct: 118 QSRLPQGATVSLGPDATGVGWVYEY-ALVDKTGQHDLGQLRALNDWFLKFELKAVPDVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +LR    T A ++      N +  G +  +        +   
Sbjct: 177 VASIGGMVRQYQVVLDPDKLRAYGITQAAVTDALGKANQASGGSVVELAESEYMVRSSGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                     V +  ++ G              P        +
Sbjct: 237 LRSLDDFRN------------------VVLRTNDAGTPVLLGDVARIQIGPEMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI+      A L+    P    +           +    
Sbjct: 279 NGQGEVAGGVIVMRSGKNALKTIDAVKAKLADLKRSLPPGVEVVTTYDRSQLIERAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K        +V +V  + + + +   VA  S+ L V+    ++   G    L S+ GI +
Sbjct: 339 KDKLIEEFIIVGLVCAVFLFHLRSAFVAILSLPLGVLAAFIVMRYQGVNANLMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKNQS-----------VFCSLDMGFSRAYSTIFDSNITAL 471
            IG  +D+ I++ E   +     +             +  +    +     +F S +   
Sbjct: 399 AIGAMIDAAIVMIENAHKHLEAFEHAFPETRMTAAQRWELIAASATEVGPALFFSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   +I  +   ++++V  +M ++IR +          
Sbjct: 459 LSFIPVFSLEGQEGKLFSPLAFTKTYTIAAAAGLSVTLVPVLMGYLIRGRIPHENANPIN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGV 550
                +   +    +R  +  +
Sbjct: 519 RVLIWLYRPLLEATLRWPWAAI 540



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 85/251 (33%), Gaps = 12/251 (4%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  +       I+  N  GE    V +     +++     ++     +   +P    
Sbjct: 261 DVARIQIGPEMRRGIAELNGQGEVAGGVIVMRSGKNALKTIDAVKAKLADLKRSLPPGVE 320

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGF 710
             T     ++    +      +I   I + +      F    A  AI +L L +      
Sbjct: 321 VVTTYDRSQLIERAVDNLKDKLIEEFIIVGLVCAVFLFHLRSAFVAILSLPLGVLAAFIV 380

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR--------DLID 762
               G+  NL ++  +   IG  ++  +V+ +   K+++ +  +            +LI 
Sbjct: 381 MRYQGVNANLMSLGGIAIAIGAMIDAAIVMIENAHKHLEAFEHAFPETRMTAAQRWELIA 440

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPI 819
            S  E      ++ +   +S +P+    G     F   A    + I  AA  S+ +   +
Sbjct: 441 ASATEVGPALFFSLLIITLSFIPVFSLEGQEGKLFSPLAFTKTYTIAAAAGLSVTLVPVL 500

Query: 820 LLFIYDWRAKN 830
           + ++   R  +
Sbjct: 501 MGYLIRGRIPH 511


>gi|319400633|gb|EFV88858.1| acrB/AcrD/AcrF family protein [Staphylococcus epidermidis FRI909]
          Length = 1051

 Score =  125 bits (313), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 60/671 (8%), Positives = 174/671 (25%), Gaps = 39/671 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + + L  ++  +G + +      +  L+  P                     +     
Sbjct: 12  NKFAIFLMVVLIILGGVYSSA----KLKLELLPDVENPVI---------SVQTTMSGATP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 +    D     L              + +T+ + +    +   +++   +  + 
Sbjct: 59  QSTQDEISSKIDNQVRSLAYVNSVKTESIPNASIVTVEYDNGTDMDKAEEQLKKEIDKIK 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                   +  L   +     IV    + +       + + ++ +Q + ++   +     
Sbjct: 119 --FKDGVGEPELTRNSMDAFPIVAYSFSSNNQK--LKDVTNKLNQQLVPKLQTIDGVQNA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN---- 239
             + +   ++  +     L +   T   +  +           +F       S       
Sbjct: 175 QLNGQTNREVSLKFKQKNLDEKGLTANDVENYIKTATRETPLGLFQFNKSNKSIIVDGQF 234

Query: 240 -----------QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                         +  +   +    +  +      T          + G      +   
Sbjct: 235 KSVDAFKNLKIPLSISGQSVQNDSDSDSDSLMPSDNTRSTNSSTHMAQKGQMPSVPLKDL 294

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                          +                     +K     
Sbjct: 295 ADISVGDERTSISKTNGKDAVNLQIMKSQDANTVQVAREVQKKVDEFVRNESGMKSIK-T 353

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                    S        A+   + +IV+ + +   +   ++  SI +++++ L  L L 
Sbjct: 354 MDTAKPIEDSLYTMVEKAALGTIVAIIVILLFLRNIRTTAISIVSIPMSILIALIALKLS 413

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ---SVFCSLDMGFSRAYSTIFD 465
             +L + ++  + + IG  +D +I+V E I                +       +  I  
Sbjct: 414 NVSLNILTLGALTVAIGRVIDDSIVVVENIFRRLSDPNEKLKGENLIISATREVFKPIMS 473

Query: 466 SNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           S +  ++  + L F     G   R FA+ +  S+L S+  +I++V ++     +      
Sbjct: 474 STLVTIVVFLPLVFVSGSVGEMFRPFALAITFSLLASLLVSITLVPSLGATFFKNGVKNR 533

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                L              +  ++  + +SI   + S+ +   +     I       L 
Sbjct: 534 EQKGGLGAVGRAYRSALNWSLNHKWIVLIVSIFILVGSVVIGARNLGTSYISTGDNKFLA 593

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +        +       + ++ +   +    E          P D    T  + ++ K  
Sbjct: 594 LTYTPKPGETQKSVTQHAEKVQNYLDKKDKVETVQYSIGGPTPQDPTGSTNSMAIMIKYQ 653

Query: 643 TEIVPLSTIQN 653
           ++        +
Sbjct: 654 SDTPNFDEEPD 664



 Score = 88.2 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 86/239 (35%), Gaps = 3/239 (1%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +++          +    +   L  ++ Q  ++V   R ++    +            T 
Sbjct: 295 ADISVGDERTSISKTNGKDAVNLQIMKSQDANTVQVAREVQKKVDEFVRNESGMKSIKTM 354

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                I   L        + + +A+++ +           +I ++ + I   L    L  
Sbjct: 355 DTAKPIEDSLYTMVEKAALGTIVAIIVILLFLRNIRTTAISIVSIPMSILIALIALKLSN 414

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +  N+  + A+   IG  ++D +VV + + + +      +   +LI  +  E     + +
Sbjct: 415 VSLNILTLGALTVAIGRVIDDSIVVVENIFRRLSDPNEKLKGENLIISATREVFKPIMSS 474

Query: 776 SMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   +  LP+  V G  G +   FA+ + F ++ +   SI +   +    +    KN 
Sbjct: 475 TLVTIVVFLPLVFVSGSVGEMFRPFALAITFSLLASLLVSITLVPSLGATFFKNGVKNR 533



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
                  + +L   +   +    + G   ++ ++  +L LIG  V + +V+ DR+   +  
Sbjct: 906  LAPFTILFSLPFTVIGVVLALIITGETISVPSLIGMLMLIGIVVTNAIVLIDRV---INN 962

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVV 807
                +  +  + ++    +   + T++A   +++P+     S I      A  +  G++ 
Sbjct: 963  EKQGMPMKSALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGMAATVIGGLIS 1022

Query: 808  AASSSIFIAAPILLFIYDWRAKNAR 832
            +   ++F+   +   ++  + K  +
Sbjct: 1023 STLLTLFVVPVMYEILFTLKNKLTK 1047


>gi|298245391|ref|ZP_06969197.1| protein-export membrane protein SecD [Ktedonobacter racemifer DSM
           44963]
 gi|297552872|gb|EFH86737.1| protein-export membrane protein SecD [Ktedonobacter racemifer DSM
           44963]
          Length = 461

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 32/180 (17%), Positives = 80/180 (44%), Gaps = 8/180 (4%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              I +   VG  + ++ I K ++   I    +++++ + ++      A   LIL    T
Sbjct: 255 SFDIASESTVGATLGQDSIYKSLIAGAIGLGIVMLFMLLYYRLP-GFLADVALILYSLLT 313

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           L  F + G+  +L  +A  +  IG +V+  V++++R+++ ++           ID     
Sbjct: 314 LAVFKMIGVTMSLAGIAGFVLSIGMAVDANVLIFERVKEELRE---GRLLASAIDIGWKR 370

Query: 768 TLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                  ++++  I+   + ++G     ++I  FA  +  G+V++  ++I +    L  +
Sbjct: 371 AWPSIRDSNISTMITCAVLYIFGTNFGATIIVGFATTLFLGVVISMFTAITVTRTFLNLL 430



 Score =  112 bits (278), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 116/392 (29%), Positives = 203/392 (51%), Gaps = 19/392 (4%)

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ-IGISESTIQRLGSHRILIQLPGEQ--- 197
            + ++L+         + +  +  +I QR+++ +G++E  ++   +      +  E    
Sbjct: 55  GVRVLLNPKPGQNPSDNEMATARNLIEQRVNKGLGVNEPVVRTQTTLDGQKSIVVELPGY 114

Query: 198 ---DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
              +     + L  T K+ F                    ++DG+   + +  ++     
Sbjct: 115 NSGNQQADVESLLRTGKLEFWDT----GSSPMQNDAPLTANADGSTKALFNGNDL---DP 167

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPS 314
           N      DP+T + V+          R    T  +IGK + + LD +V+++ VI   +P 
Sbjct: 168 NSLNVQQDPQTSQYVITFGMRGDAVGRLSSYTAKSIGKYMTITLDNKVISSAVIQSQLPG 227

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
              QISG+FT++ A  L  +L+ G+LPI  +I  E  VGA LG DSIYK   A   GL +
Sbjct: 228 -NGQISGSFTLDQANQLVQLLKIGALPISFDIASESTVGATLGQDSIYKSLIAGAIGLGI 286

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           ++LFM++ Y   G +AD ++ L  +LTLA+  ++G T++L  IAG VL IG+AVD+N+L+
Sbjct: 287 VMLFMLLYYRLPGFLADVALILYSLLTLAVFKMIGVTMSLAGIAGFVLSIGMAVDANVLI 346

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR----GFAI 490
            ER++EE R+ + +  ++D+G+ RA+ +I DSNI+ +I   VL+ FG         GFA 
Sbjct: 347 FERVKEELREGRLLASAIDIGWKRAWPSIRDSNISTMITCAVLYIFGTNFGATIIVGFAT 406

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           T+ L ++ISMFTAI++ R  +  ++    +  
Sbjct: 407 TLFLGVVISMFTAITVTRTFLNLLVPTGVINH 438



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/444 (10%), Positives = 112/444 (25%), Gaps = 28/444 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLI--ALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           MR     ++   ++   G       PN   Q                 GLDL+GG  ++L
Sbjct: 1   MRRGTLTLLFLIILLAAGAAYTVFWPNAASQKGGKPLYGINNPFTFHQGLDLQGGVRVLL 60

Query: 59  EVDE-DDFVNGFLQMYSDELRSFLK-KEGIGVFSMRQ-----IQNKITLSFADSRFKENI 111
                 +  +  +    + +   +    G+    +R       Q  I +         N 
Sbjct: 61  NPKPGQNPSDNEMATARNLIEQRVNKGLGVNEPVVRTQTTLDGQKSIVVELP-GYNSGNQ 119

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
              V   L+    +        +     + +  +  + +   + + +  +     +  + 
Sbjct: 120 QADVESLLRTGKLEFWDTGSSPM-----QNDAPLTANADGSTKALFNGNDLDPNSLNVQQ 174

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
           D           +    +                +    K+    V+ +           
Sbjct: 175 DPQTSQYVITFGMRGDAVGRLSSYTAKSIGKYMTITLDNKVISSAVIQSQLPGNGQISGS 234

Query: 232 FLRDSDGNQYLVEDKVEI-----------SGIHLNGATANFDPKTHKPVVDISFDEMGAR 280
           F  D       +     +            G  L   +           + I    M   
Sbjct: 235 FTLDQANQLVQLLKIGALPISFDIASESTVGATLGQDSIYKSLIAGAIGLGIVMLFMLLY 294

Query: 281 RFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSL 340
                   ++   L  +L   V     +  ++      +        A +L        L
Sbjct: 295 YRLPGFLADVALILYSLLTLAVFKMIGVTMSLAGIAGFVLSIGMAVDANVLIFERVKEEL 354

Query: 341 PIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVIL 400
                +    ++G      SI     + +      VL++        ++  F+  L + +
Sbjct: 355 REGRLLASAIDIGWKRAWPSIRDSNISTMITCA--VLYIFGTNFGATIIVGFATTLFLGV 412

Query: 401 TLALLSLLGATLTLPSIAGIVLGI 424
            +++ + +  T T  ++      I
Sbjct: 413 VISMFTAITVTRTFLNLLVPTGVI 436


>gi|302878162|ref|YP_003846726.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
 gi|302580951|gb|ADL54962.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
          Length = 1060

 Score =  125 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 63/682 (9%), Positives = 163/682 (23%), Gaps = 65/682 (9%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++   G+         +  +D  P                 +++ ++++          
Sbjct: 16  VLLMVFGMAALGVYNYQKLPIDAVPDI---------------TNVQVQINTAAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
               +    + + + L          R   +++T+ F D          V   +Q    K
Sbjct: 61  AEQRITYPIETVMAGLPGLQQTRSLSRYGLSQVTVIFKDGTDIYFARQLVNERIQQAKGK 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNI------DQVISHAIEQSMEIIRQRIDQIGISES 179
           L    +  +   +T      + +          D       +           Q+     
Sbjct: 121 LPAGVEPGMGPISTGLGEIFMWTVEAGEGAKKADGTPYTPTDLREIQDWIIKPQLRNVPG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         +      P +L     T   M       N +        R  +     
Sbjct: 181 VTEINTIGGYAKEFQVAPLPDKLVAHGLTLQDMVAAIERNNANVGAGYIEKRGEQYLIRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V    +I                     +I                 +G    +   
Sbjct: 241 PGQVATIEDIG--------------------NIIVGSRQGVPIRIRDVAEVGIGKELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +        +        +             + 
Sbjct: 281 AATENGREVVLGTVFMLIGENSRTVSQAVAKRLEEINRTLPQGVVAQTVYDRTILVDKAI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+ +LF+ +   +  ++    I L ++ T   +     +  L S+  
Sbjct: 341 NTVKKNLVEGALLVVAILFLFLGNIRAAIITALVIPLAMLFTFTGMVSNKVSANLMSLGA 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDSNIT 469
           +  GI   +D  +++ E         QS           F  +      A   +    + 
Sbjct: 401 LDFGII--IDGAVVIVENCVRRLAHAQSKAGRALTRNERFHEVFAAAREARRPLLYGQLI 458

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++  + +F      G      A T+  ++L +M  ++S + A +  +I  K  +     
Sbjct: 459 IMVVYLPIFALTGVEGKMFHPMAFTVVTALLGAMILSVSFIPAAVALLIGDKVSEKESRL 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +    +         ++   + ++              +G I L     
Sbjct: 519 MEWAKRGYAPMLNRVMLNKPIVLTIAAVAVILSALLATRMGSEFVPSLNEGDIALQ---A 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             +  + +   LE     + + + F        +L      +             +    
Sbjct: 576 LRIPGTSLTQALEMQTELERTIKQFPEVDRIFAKLGTAEIATDPMPPNAADNFVMLKPQS 635

Query: 647 PLSTIQNTEIVGPKISRELIRK 668
                + ++       +E + K
Sbjct: 636 EWPDPKRSKADLVNAMQEAVTK 657



 Score = 38.1 bits (86), Expect = 6.2,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 59/173 (34%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V  + + + I          A+     + L +  T        +  NL ++ A+    G 
Sbjct: 348 VEGALLVVAILFLFLGNIRAAIITALVIPLAMLFTFTGMVSNKVSANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDK-------SINETLGRSVYTSMAAFISVLP 785
            ++  VV+ +   + +    +        ++       +  E     +Y  +   +  LP
Sbjct: 406 IIDGAVVIVENCVRRLAHAQSKAGRALTRNERFHEVFAAAREARRPLLYGQLIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    A  +   ++ A   S+ FI A + L I D    K +R+
Sbjct: 466 IFALTGVEGKMFHPMAFTVVTALLGAMILSVSFIPAAVALLIGDKVSEKESRL 518


>gi|258542014|ref|YP_003187447.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256633092|dbj|BAH99067.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01]
 gi|256636149|dbj|BAI02118.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-03]
 gi|256639204|dbj|BAI05166.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-07]
 gi|256642258|dbj|BAI08213.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-22]
 gi|256645313|dbj|BAI11261.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-26]
 gi|256648368|dbj|BAI14309.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-32]
 gi|256651421|dbj|BAI17355.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-01-42C]
 gi|256654412|dbj|BAI20339.1| multidrug efflux pump acriflavin resistance protein AcrB/AcrD/AcrF
           [Acetobacter pasteurianus IFO 3283-12]
          Length = 1057

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 63/600 (10%), Positives = 155/600 (25%), Gaps = 42/600 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V+L  +I   G+       +  +  D FPS                       
Sbjct: 9   LKKPYTFVVLSILILVFGI-----RGIFNTPTDVFPSIRIPVV---------AVVWTYTG 54

Query: 61  DEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              + ++G +  Y +  L + +             +  + + F           ++T   
Sbjct: 55  LMPEDMSGRVVYYYERALTATVNNIEHIESQSYYGRGIVKIYFQPGTDTSVAQTQITSVS 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q V  ++       L++      + +V  Q +       A +            +     
Sbjct: 115 QTVIKQMPTGSTPPLVLAYNASSVPVVTLQVSST--SMTASQIYDMSSNLIRPALVSVAG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +  + DP +L     +   +S      N         +         
Sbjct: 173 AAIPNPYGGQPGNIMVDLDPVKLLAHRLSPVDVSRALNSQNIVLPAGDQRIGPFDWMVQT 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
               +                      + +  I   ++G           +        +
Sbjct: 233 NASPK--------------------NMEELNMIPIKQVGDAVVRLQDVAWVHAGGPPQTN 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++        +       S    +     L   +           V          S 
Sbjct: 273 LVLVKGQQGVLIVIMKSGDASTLDVVAGVKKLLPGIVKTLPEGVSIKVLNDASTFVKESV 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                     A L  +V+ + +   +  ++   SI L ++ ++  L   G T+ + ++ G
Sbjct: 333 QDVVREMLTAACLTGLVVLLFLGSWRSTVIIATSIPLAMLCSVIGLGWAGQTINVMTLGG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   ++ E I       + +  ++    ++     F S +   I  + LF 
Sbjct: 393 LALAVGILVDDATVMIENIDAHLEMEKDLETAIIDAANQIVIPTFVSTMCICIVWMPLFQ 452

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLI 534
             G         A  +  +++ S   + ++V  M  ++   +          P + F   
Sbjct: 453 LTGVAGWLFMPMAEAIIFAMIASFILSRTLVPTMAKYMLAAQVAAHAHGPQEPKTIFGRF 512

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +F + R     +           +    L           +G      V+   +
Sbjct: 513 QRGFERKFEQFRHRYHELLSHLVATRGTFVPVFVLCSLGSLGLLFFVGQDFFPEVNSDAI 572



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 54/168 (32%), Gaps = 8/168 (4%)

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
             +   +        +   + +L     R     A      ++  +          G   
Sbjct: 330 ESVQDVVREMLTAACLTGLVVLLFLGSWRSTVIIATSIPLAMLCSVIG----LGWAGQTI 385

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           N+  +  +   +G  V+D  V+ + +                I  + N+ +  +  ++M 
Sbjct: 386 NVMTLGGLALAVGILVDDATVMIENI---DAHLEMEKDLETAIIDAANQIVIPTFVSTMC 442

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             I  +P+    G     F  PMA  I+ A  +S  ++  ++  +  +
Sbjct: 443 ICIVWMPLFQLTGVAGWLFM-PMAEAIIFAMIASFILSRTLVPTMAKY 489



 Score = 46.2 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 53/142 (37%), Gaps = 4/142 (2%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             W      IT L   +        L     ++ A+   +  +G +  + ++V    R+  
Sbjct: 911  SWLDPFIIITALPGALAGISWSLFLTHTTLSVPALTGAIMCMGTATANAILVVAFARE-- 968

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            +L     + +  ++    E +   + T+ A  I +LPM++            +  G++VA
Sbjct: 969  RLEEHGDAIKAALEAGF-ERIRPVLMTASAMIIGMLPMSLSNSQN-APLGKAVMGGLMVA 1026

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
              +++     +   ++  +  +
Sbjct: 1027 TVATLLFVPCVFAMLHTRKKPH 1048


>gi|171319732|ref|ZP_02908821.1| acriflavin resistance protein [Burkholderia ambifaria MEX-5]
 gi|171095041|gb|EDT40056.1| acriflavin resistance protein [Burkholderia ambifaria MEX-5]
          Length = 1077

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/658 (11%), Positives = 172/658 (26%), Gaps = 70/658 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  P+                  ++   
Sbjct: 8   LRRPYTFIVMAVMIVL-----ATPLALMRTPVDVLPAVNIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSD-----ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           + + F    +           L + +        +       + +        +    + 
Sbjct: 50  NYNGFSASEMTNRITAVHERILTTTVNNIEHIESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +   +   +     Q+ 
Sbjct: 110 VSSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LADIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  L     T A +       N         +     
Sbjct: 168 TVRGAQIPFPYGGRTRVVAIDLDPQALLAKGLTPADIVNAVNTQNLVLPTGTAKMGQSEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +I                     D+    +     +     ++    A
Sbjct: 228 RIDTNASADTIADI--------------------NDLPIQTVNGATTYLREVASVRDGFA 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLMSILKTGDASTLKVVSDLKALLPKVIPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKN----------------------QSVFCSLD 453
           ++ G+ L +G+ VD   +  E I                              S+  ++ 
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGARLPSGPVDGQRPQDARGPSFSTSLHDAIL 447

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAM 510
            G        F S +   I  V +FF  G         A  +  ++L S   + ++V  +
Sbjct: 448 EGAGEIAVPAFVSTLCICIVFVPMFFLTGVARFLFVPLAEAVVFAMLASYVLSRTLVPTL 507

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
            + + R ++  +      SRF  I       F R R W + +  +  +            
Sbjct: 508 AMLLFRPQQAGTGPARSTSRFARIHHAFNGAFERLRAWYIVLLSMLLVRRRFYATCFLGF 567

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
             +       LG       D   +R +L +     I       ++   V  +  P D 
Sbjct: 568 CVLSTGLVFVLGRDFFPNADSGNIRLHLRAPTGYRIEETARLTDQVERVIREAVPPDE 625



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/171 (16%), Positives = 63/171 (36%), Gaps = 20/171 (11%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  ++ +     W   L    ++ L I  +L   +  G   N+  +  +   +G
Sbjct: 338 ALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTT-------------------SISFRDLIDKSINETLGRS 772
             V+D  V  + + +++ L                      S S  D I +   E    +
Sbjct: 398 ILVDDATVTIENIERHLHLGARLPSGPVDGQRPQDARGPSFSTSLHDAILEGAGEIAVPA 457

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +++   I  +PM    G     F +P+A  +V A  +S  ++  ++  +
Sbjct: 458 FVSTLCICIVFVPMFFLTGVARFLF-VPLAEAVVFAMLASYVLSRTLVPTL 507



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  I+ +   +        + G   ++ A+   +  +G
Sbjct: 912  VAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 971

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +              ++    +   + T++A  I ++PMA+   
Sbjct: 972  VATANSILVVSFARQRLAA---GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1028

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1029 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1057


>gi|170703158|ref|ZP_02893970.1| acriflavin resistance protein [Burkholderia ambifaria IOP40-10]
 gi|170131935|gb|EDT00451.1| acriflavin resistance protein [Burkholderia ambifaria IOP40-10]
          Length = 1082

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 76/663 (11%), Positives = 172/663 (25%), Gaps = 75/663 (11%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     +++  MI       A P  L ++ +D  P+                  ++   
Sbjct: 8   LRRPYTFIVMAVMIVL-----ATPLALMRTPVDVLPAVNIPV-----------ISVIW-- 49

Query: 61  DEDDFVNGFLQMYSD-----ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
           + + F    +           L + +        +       + +        +    + 
Sbjct: 50  NYNGFSASEMTNRITAVHERILTTTVNNIEHIESTSLPGIAVVKVFLQPGANVQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q +  ++       L++T +   I ++    +   +   +   +   +     Q+ 
Sbjct: 110 VSSAQAIVRQMPQGATPPLVITYSASSIPVIQLGLSSKTLSEQS--LADIALNFLRPQLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + DP  L     T A +       N         +     
Sbjct: 168 TVRGAQIPFPYGGRTRVVAIDLDPQALLAKGLTPADIVNAVNTQNLVLPTGTAKMGQSEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                   +   +I                     D+    +     +     ++    A
Sbjct: 228 RIDTNASADTIADI--------------------NDLPIQTVNGATTYLREVASVRDGFA 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L   +                    
Sbjct: 268 PQTNVVRQNGQRGVLMSILKTGDASTLKVVSDLKALLPKVIPTLPEGLTITPLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L++  +L  LS LG T+ + 
Sbjct: 328 NAAVQGVIHEALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKN---------------------------QSV 448
           ++ G+ L +G+ VD   +  E I                                    +
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHLGTRRAAPSVPSAPLGGQRPEGARGSSFSTDL 447

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAIS 505
             ++  G        F S +   I  V +FF  G         A  +  ++L S   + +
Sbjct: 448 HDAILEGAGEIAVPAFVSTLCICIVFVPMFFLTGVARYLFVPLAEAVVFAMLASYVLSRT 507

Query: 506 IVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           +V  + + + R ++  +   +  SRF  I       F R R W + +  +  +       
Sbjct: 508 LVPTLAMLLFRPRQAGTGPDHSTSRFARIHHAFNNAFERLRAWYIVLLSMLLVRRRFYAM 567

Query: 566 THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP 625
                  +       LG       D   +R +L +     I       ++   V  +  P
Sbjct: 568 CFLGFCVLSTGLVFVLGRDFFPNADSGNIRLHLRAPTGYRIEETARLTDQVERVIREAVP 627

Query: 626 GDS 628
            D 
Sbjct: 628 PDE 630



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 62/176 (35%), Gaps = 25/176 (14%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  ++ +     W   L    ++ L I  +L   +  G   N+  +  +   +G
Sbjct: 338 ALIAAVLTAMMILLFLGNWRSTLIIAISIPLSIFTSLIALSALGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSI------------------------SFRDLIDKSINE 767
             V+D  V  + + +++ L T                              D I +   E
Sbjct: 398 ILVDDATVTIENIERHLHLGTRRAAPSVPSAPLGGQRPEGARGSSFSTDLHDAILEGAGE 457

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
               +  +++   I  +PM    G     F +P+A  +V A  +S  ++  ++  +
Sbjct: 458 IAVPAFVSTLCICIVFVPMFFLTGVARYLF-VPLAEAVVFAMLASYVLSRTLVPTL 512



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 56/149 (37%), Gaps = 7/149 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++ + + + I + F  W   L  I+ +   +        + G   ++ A+   +  +G
Sbjct: 917  VAMAIVLVYLLIVVNFQSWLDPLIIISAMPAALAGIAWMLFITGTHLSVPALTGAIMTVG 976

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +              ++    +   + T++A  I ++PMA+   
Sbjct: 977  VATANSILVVSFARQRLAA---GAPPLTAALEAGATRIRPVLMTALAMIIGMVPMALGLG 1033

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G          +  G++ A  S++    
Sbjct: 1034 EGAEQNAPLGRAVIGGLLFATVSTLLFVP 1062


>gi|153807982|ref|ZP_01960650.1| hypothetical protein BACCAC_02268 [Bacteroides caccae ATCC 43185]
 gi|149129591|gb|EDM20805.1| hypothetical protein BACCAC_02268 [Bacteroides caccae ATCC 43185]
          Length = 1036

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/646 (11%), Positives = 197/646 (30%), Gaps = 16/646 (2%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +   +    LL+       Q  +D  P         L ++L+ G     E   ++    F
Sbjct: 13  VTICMIVFALLLLGKVSYDQLSVDLLPDLNNP---RLFIELKVG-----ERPPEEIEKQF 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           ++              +    ++    +IT+ +  ++  +     +   +         +
Sbjct: 65  VKNMESMAIRQSDVTQVS-SVIKAGTARITVEYTWTKDMDEAFLDLQKAMNPFAQN--KE 121

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
             +  +         +VL   +   +     E          +++   E   +   S   
Sbjct: 122 ITELKITQHDANLSPVVLVGMSHQNIT-DMAELRRIAESYIRNELIRLEGVAEVTLSGEE 180

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           +  L  + DP +L         ++      N S  G       L+    +  L   + + 
Sbjct: 181 VTTLTVQTDPYKLNAFQLKIEDIASRIESNNQSISGGRVSELGLQYLVKSSSLFSTEADF 240

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
              +L         +T       +  ++     F      +    A   +   +      
Sbjct: 241 --ENLIVGYKPVQQETSGNSSSETVTDLNKAPVFLKEVATVQFVNARPENIVRINGKRSI 298

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 + + +    ++      A++          ++          +    K +  + 
Sbjct: 299 GLSIYKEMRFNTVKVVDEVTSRLAVIEDALPGYHFQVIS-NQGTFIKSAIGEVKSSAILG 357

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             L +IVLF+ +      L+   SI ++++ T  L+   G TL + ++ G+ LG G+ VD
Sbjct: 358 IVLAVIVLFVFLRRMGTTLIVSLSIPISIVATFNLMFFNGLTLNIMTLGGLALGAGMLVD 417

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           + I+V E I     K  SV  ++  G +   + +  S +T ++  + + +  G +   F 
Sbjct: 418 NAIVVIESIFRNQEKGVSVKEAVVTGTAEVANAVIASTLTTIVVFLPIVYLHGASGELF- 476

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
                ++  S+ +++ +   ++  +      K + +  +    +      ++ +    W 
Sbjct: 477 KDQAWTVTFSLVSSLFVAILVIPMLYTQLSGKKVKMEEVKSIRITRYSKILRKLVRHRWW 536

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V    +  +    LL        +          +   P    + R+      + D+ + 
Sbjct: 537 VIGMAVLLLVVTGLLTPFIGTEFMPRAESKAFTAVVKMPEGTQMERTAAAVGNLEDLLYT 596

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              G+    +      G               +  I+    I + E
Sbjct: 597 IVGGDSLCTIYSHVGEGSGSENAIFEGENTAMMKIILFPECILSPE 642



 Score = 95.5 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 102/244 (41%), Gaps = 7/244 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                +   + S+  G    +     ++ + ++        +  +V   V+  + +I   +
Sbjct: 788  TQEFLLDEIASITHGQAPKEILRRNQSRIGKIMANMDTGKSLDKVAAEVRLAVKDIDLPA 847

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
                T     +  +E +   +  +++S + + + +  +F+        + T+ L +   +
Sbjct: 848  NYSITVTGEEEKRQESMHSLLFALLLSVVLVYMVMASQFESLLHPFTILLTIPLAVVGAI 907

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              F + G   N+  V  ++ L G +VN+ +++ DR+    +L    +   D I ++  + 
Sbjct: 908  LLFFITGTTINMMGVIGIVMLGGIAVNNSIILVDRIN---QLSQAGMELTDAIVEAGQQR 964

Query: 769  LGRSVYTSMAAFISVLPM-AVWG-GSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   + T++   +++LPM   +G G+ + S  AI +  G++ +   S+ +   +   +  
Sbjct: 965  IRPIIMTTLTTILAMLPMTFGFGEGASLRSPMAIAVIGGLITSTLMSLMVIPCVYYVLEK 1024

Query: 826  WRAK 829
             + +
Sbjct: 1025 IKRR 1028



 Score = 77.4 bits (188), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 88/285 (30%), Gaps = 6/285 (2%)

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
            S      ++ + +               +  L   PV L  V +        +   +  
Sbjct: 234 FSTEADFENLIVGYKPVQQETSGNSSSETVTDLNKAPVFLKEVATVQFVNARPENIVRIN 293

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 L   +    ++V     +      I + +P    Q     G  I   +      
Sbjct: 294 GKRSIGLSIYKEMRFNTVKVVDEVTSRLAVIEDALPGYHFQVISNQGTFIKSAIGEVKSS 353

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +A+++      +    L    ++ + I  T       G+  N+  +  +    G
Sbjct: 354 AILGIVLAVIVLFVFLRRMGTTLIVSLSIPISIVATFNLMFFNGLTLNIMTLGGLALGAG 413

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             V++ +VV + +    +     +S ++ +     E     + +++   +  LP+     
Sbjct: 414 MLVDNAIVVIESI---FRNQEKGVSVKEAVVTGTAEVANAVIASTLTTIVVFLPIVYLHG 470

Query: 790 -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G +    A  + F +V +   +I +   +   +   + K   +
Sbjct: 471 ASGELFKDQAWTVTFSLVSSLFVAILVIPMLYTQLSGKKVKMEEV 515


>gi|115315309|ref|YP_764032.1| resistance-nodulation-cell division acriflavin:proton (H+)
           antiporter [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156503135|ref|YP_001429200.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|115130208|gb|ABI83395.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Francisella tularensis subsp. holarctica
           OSU18]
 gi|156253738|gb|ABU62244.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           protein [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 1037

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 150/524 (28%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G+         +  + ++P                         
Sbjct: 9   RRPVLSLSISFMIIVVGVGS-----FFKLQVRQYPYIDSATIT---------VTTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +  F+    +      K             + IT+         ++  +V   +  
Sbjct: 55  NPATIQAFVTRPLEAAVGSSKGIDYMTSESALGTSTITVYVKLGYNTNDVLSEVVQNVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  D     +   +      ++          +  E S  I  +   ++       
Sbjct: 115 ILNQLPQDAYSPAIKLNSADNFPSLILAFTSK--TMNTSEISAYINSELTPKLLAEGGLS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    + +R+ +   T  ++       +    G      +L  +     
Sbjct: 173 EINVWGNMPYAMRIYPNKTRMAEYGITPTELVTAIGSNSLVSAGGQIQGPYLNYT----- 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  T +   ++   +   +         +           
Sbjct: 228 ---------------LNPETSMSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A      + +    +         ++A         V   +      S   
Sbjct: 273 YFDGKNAVLAGAVVSPEENPLDVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V IV+F+ +   +  +V   +I L++I +  L+S++G ++ L ++  ++
Sbjct: 333 VLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +    F +   G     + +    +T ++    +   G
Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G     FA ++  ++LIS   A ++   M   ++  + M S
Sbjct: 453 GFTGQLFTEFAYSLAGAVLISGIVAYTLSPMMCSKVLNREMMSS 496



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 59/485 (12%), Positives = 143/485 (29%), Gaps = 20/485 (4%)

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP--SIAGIVLG 423
            + +  +V +  F  +   ++  +   +I +      A  + + A +T P  +  G   G
Sbjct: 17  ISFMIIVVGVGSFFKLQVRQYPYIDSATITVTTSYPGANPATIQAFVTRPLEAAVGSSKG 76

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYSTIFDSNITALI 472
           I      + L    I    +   +    L                 AYS     N     
Sbjct: 77  IDYMTSESALGTSTITVYVKLGYNTNDVLSEVVQNVNSILNQLPQDAYSPAIKLNSADNF 136

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +++L F               S L     A   +  + ++      M+          +
Sbjct: 137 PSLILAFTSKTMNTSEISAYINSELTPKLLAEGGLSEINVWGNMPYAMRIYPNKTRMAEY 196

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I     +  + +         +        L              + +    N+ V LS
Sbjct: 197 GITPTELVTAIGSNSLVSAGGQIQGPYLNYTLNPETSMSTAQEYRNLIIKKSDNQIVRLS 256

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  + S             +     + +     L      I   +P     
Sbjct: 257 DVARVELGAQNYNSSVYFDGKNAVLAGAVVSPEENPLDVVNRLVKQLPNIKASLPNGLNV 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           +            I + +  ++ + I + I +++        +  I  + L I  +    
Sbjct: 317 DVAYNSTLYIESSIDEVLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           ++ G   NL  + A++  IG  V+D +VV + +    +     +       K   E    
Sbjct: 377 SIMGFSINLLTLLAMILAIGLVVDDAIVVLENI---YRHIEEGMEPFAAAIKGAREIANP 433

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++   +   P+ + G   G +   FA  +A  ++++   +  ++  +   + +   
Sbjct: 434 VILMTLTLIVVYAPIGMMGGFTGQLFTEFAYSLAGAVLISGIVAYTLSPMMCSKVLNREM 493

Query: 829 KNARI 833
            ++++
Sbjct: 494 MSSKL 498



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 93/295 (31%), Gaps = 14/295 (4%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                      S  ++     N  +  +    + + ++    L      L +L       Q
Sbjct: 732  YINYFFLKGYSFQVIPQLARNEMLTQEQLGNIYIRSDEMNKLFDSEVPLSALVTFKTEGQ 791

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                     +                + ++   + +  +     +        + +    
Sbjct: 792  PLTLNTFQQLNASTISAVMAPGITQGQAIEYVQSVVKSMLPEGFSYNFSGSARQYIENGN 851

Query: 670  IVGVIISAIAMLIYIWIR-----FKWYFALGAITTLILD-ITKTLGFFALFGIE---FNL 720
             + V  +   +LI++ +      F+    +     + +      L      G      N+
Sbjct: 852  TMMVAFAFAIVLIFLALSAQFESFRDSLVILVTIPMAISGALIPLYVGQYLGASWASLNI 911

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 ++TLIG      ++V +    N       ++  D I  S ++ L   + T  A  
Sbjct: 912  YTQLGLVTLIGLISKQGIMVVE--FANHLQKHNGMNKYDAIVTSSSQRLRPILMTVSAMV 969

Query: 781  ISVLPMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + V+P+    G   I      + ++ G+V+ A  S+F+   + ++I   ++K+ +
Sbjct: 970  VGVIPLVTSSGAGAISRNCIGVVISSGLVIGAIFSLFVLPVVYMYIASDKSKSVK 1024


>gi|149910492|ref|ZP_01899132.1| AcrB/AcrD/AcrF family protein [Moritella sp. PE36]
 gi|149806452|gb|EDM66424.1| AcrB/AcrD/AcrF family protein [Moritella sp. PE36]
          Length = 1072

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/489 (13%), Positives = 143/489 (29%), Gaps = 28/489 (5%)

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
           +  +D     L+    ELR  +      V +  +    I L F            V   +
Sbjct: 55  ISPEDGERALLRPLEQELR-GIDGLKEMVSTASEGHASIQLEFHAGIDSNIALASVREKV 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L  D ++ ++   +       L+      V   A+   + + R    +I     
Sbjct: 114 SLAKAQLPDDSEEPVVKEISMATQKPALTVILSGDVSERAL---ITVSRDLKQKIEALTE 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            ++          +    DP  +       + +                          N
Sbjct: 171 VLEVSVGGDREDMIEILVDPLLMESYNLDQSDIYNLI--------------------SRN 210

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             LV      SG             + K V+D+     G R         + +     + 
Sbjct: 211 NLLVAAGTLDSGQGRFPVKVPSVFDSLKDVLDLPVKVDGTRVITFGDVAEVRRSYKDPVS 270

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +            +   +   T+E    L     A    +        +        
Sbjct: 271 FARIDGRAAVSLEVKKRPGENIIETVEKVKALVNQESAYWQGVINVDFTADSSEDVKDML 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  +        LV+IV+   +      L+   +I  + +  + +L+L G T+    +  
Sbjct: 331 NDLQNNVMSAVILVVIVIIGSLGAR-SALLVGIAIPGSFLAGILMLALWGYTINTVVLFA 389

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +++ +G+ VD  I+V E    E  + +S   + ++   R    I  S  T L A   L F
Sbjct: 390 LIMAVGMLVDGAIVVTEFADREMNEGRSNKEAYELAAKRMAWPIIASTATTLAAFAPLLF 449

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           + G     ++   +T+  ++  S+  A+  V  +   + R + + +++            
Sbjct: 450 WPGMMGEFMKFLPLTLITTLSASLVMALIFVPTLGGLVGRRRNLSALEQKQTEMAEKGDV 509

Query: 537 CIAIQFMRA 545
                    
Sbjct: 510 TQMPGMTGW 518



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 70/181 (38%), Gaps = 26/181 (14%)

Query: 672  GVIISAIAMLIYIWIRF-KWYFALGAITTLILD-ITKTLGFFAL---FGIEFNLTAVAAV 726
             ++I+   M I +  +F  +Y A   +T +I   +   LG   +   FGI  +   V ++
Sbjct: 859  ALLIALAVMAIILVTQFNSFYQAFLILTAVIFSTVGVFLGLMIVQEPFGIVMSGIGVISL 918

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
                G  VN+ +V+ D       L    ++  + + ++  + L   + T++   + ++PM
Sbjct: 919  A---GIVVNNNIVLIDTYN---VLKQEGLTAVEAVLRTGAQRLRPVMLTTVTTILGLMPM 972

Query: 787  AV------------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             +            +G          A  +A G+  A   ++ +   +L+       +  
Sbjct: 973  VLQMNIDIVDRTTTFGAPSTQWWSQLATAVAGGLTFATVLTLVLTPCMLVLGDRISQRWN 1032

Query: 832  R 832
            +
Sbjct: 1033 K 1033



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 6/140 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
             AL     +       +   AL+G   N   + A++  +G  V+  +VV +   + M  
Sbjct: 355 RSALLVGIAIPGSFLAGILMLALWGYTINTVVLFALIMAVGMLVDGAIVVTEFADREMNE 414

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVV 807
                S ++  + +        + ++     +  P+  W    G  +    + +   +  
Sbjct: 415 ---GRSNKEAYELAAKRMAWPIIASTATTLAAFAPLLFWPGMMGEFMKFLPLTLITTLSA 471

Query: 808 AASSSIFIAAPILLFIYDWR 827
           +   ++     +   +   R
Sbjct: 472 SLVMALIFVPTLGGLVGRRR 491


>gi|54294984|ref|YP_127399.1| chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila str. Lens]
 gi|53754816|emb|CAH16303.1| Chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila str. Lens]
          Length = 1066

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 76/510 (14%), Positives = 151/510 (29%), Gaps = 49/510 (9%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----VNGFLQMYSDELRSFLK 82
           L Q  +D FP   P               +V++          V   +    +   +   
Sbjct: 31  LKQMPVDVFPEFAPP-------------QVVVQTQAPGMATQDVETLITYPLESAINGTP 77

Query: 83  KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL-LVTTTEK 141
                        + IT+ F D          V   +Q V ++L       + L  T+  
Sbjct: 78  GVASVRSKTSVGLSTITVVFDDKTDIYLNRQLVNERIQQVINRLPPGVSSPVMLPVTSAV 137

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              +  +  +           S   IR R+  +G        +     + Q   + DP R
Sbjct: 138 GWLLKYALVSHTASPETLRTISDWTIRPRLLALG---GVASVVSLGGEVKQYQVQLDPKR 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           +     T  ++                         GNQ +    V   G     +T   
Sbjct: 195 MLAYGITVEEVRQALAT-------------------GNQNVPGAFVHQGGTEFVVSTIGR 235

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                     +     G                    D        +   +       + 
Sbjct: 236 IKTLDDIKKTLIVVRKGVPVTVNNVATVAFGGEIKRGDASFNAEHAVIGTVSKIYGADTL 295

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
             T++    LA + ++    I+LN    R       +           A +V+ VLF+ +
Sbjct: 296 TTTLKVEQALADIKKSLPTGIELNTEVFRQANFIESAIHNLTKALIEGAVIVIAVLFLFL 355

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           +  +   +   S+ ++ I+ + +L   G  +   ++ G+ + IG  VD  I+  E +   
Sbjct: 356 MNWRASFITFLSMPVSFIVGILVLHYFGFGINSMTLGGMAIAIGEVVDDGIITVENVVHR 415

Query: 442 NRKNQ------SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITM 492
            R N+           +        S++  + I   +  + +FF  G         AI  
Sbjct: 416 LRLNRLAENPLPAIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGIPERIFSPLAIAY 475

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             S+L S+  +I++V A+   ++  K  K+
Sbjct: 476 IASVLGSLVVSITMVPALCYLLLARKTEKN 505



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 86/263 (32%), Gaps = 13/263 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMV 638
            + V    PV ++ V +     +I                  +    D++  T +V + +
Sbjct: 246 LIVVRKGVPVTVNNVATVAFGGEIKRGDASFNAEHAVIGTVSKIYGADTLTTTLKVEQAL 305

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAI 697
                 +     +              I      +I  + I + +       W  +    
Sbjct: 306 ADIKKSLPTGIELNTEVFRQANFIESAIHNLTKALIEGAVIVIAVLFLFLMNWRASFITF 365

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTT 753
            ++ +     +     FG   N   +  +   IG  V+D ++    V  R+R N +L   
Sbjct: 366 LSMPVSFIVGILVLHYFGFGINSMTLGGMAIAIGEVVDDGIITVENVVHRLRLN-RLAEN 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            +   +++  ++ E     VY ++   +  LP+    G     F+ P+A   + +   S+
Sbjct: 425 PLPAIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGIPERIFS-PLAIAYIASVLGSL 483

Query: 814 FIAAPIL-----LFIYDWRAKNA 831
            ++  ++     L +     KN 
Sbjct: 484 VVSITMVPALCYLLLARKTEKNQ 506


>gi|304392040|ref|ZP_07373982.1| acriflavin resistance protein [Ahrensia sp. R2A130]
 gi|303296269|gb|EFL90627.1| acriflavin resistance protein [Ahrensia sp. R2A130]
          Length = 1230

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/512 (11%), Positives = 135/512 (26%), Gaps = 42/512 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +     +V++  ++   G              +  P                   +V + 
Sbjct: 9   LSRPKTVVMMMLVMIIAGAYS-----YVTIPKEAQPDIDVPVYF---------VSVVQQG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                    L    +     L           Q      L F     K+ +   +   + 
Sbjct: 55  ISPGDAERLLVRPLETKLRGLDGLKELTTLANQSNAVAVLEFEIGTDKDKVLADIRDKVD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +++  D  + ++  T       ++   + +       + S    R+  D++    S 
Sbjct: 115 QAKAEMPADADEPIINETNFALQPTLIVTLSGNVPERTLYQYS----RRLKDELEAITSV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   S +    L    D ++L     T  ++       N             R +    
Sbjct: 171 REANLSGQREEMLEVVLDLAKLESYNITQTELLNALATNNQLVAAGTLDNGSGRFNLKVP 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            LVE   ++                      I   + G           I +        
Sbjct: 231 GLVESAADV--------------------YSIPIKQNGEAVVTLGQVAEIRRTFKDPSAY 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +            +   +            A                           
Sbjct: 271 TRVNGEPAIALQVVKRIGENIIENNVAVREKVAAFSKDWPSTIKINFLLDESSFINEVQG 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +      LVL+V+   +     G++   S+ ++  +   +L+L G T+ +  + G+
Sbjct: 331 SLQASIMTAIALVLVVVVASLGLR-SGMLVGLSVPVSFAVGFLILALAGITVNMMVLFGM 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL +G+ VD  I+V E    +  +      +        +  +  S  T L A + L  +
Sbjct: 390 VLTVGMLVDGAIVVTEYADRKLSEGMPADEAYKRAAQLMFWPVVSSTATTLAAFLPLLLW 449

Query: 481 ---GGGAVRGFAITMGLSILISMFTAISIVRA 509
               G  +    I + + +  S+ TA+  +  
Sbjct: 450 PGVPGEFMSYLPIMVIVVLTASLLTALIFLPT 481



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 81/259 (31%), Gaps = 25/259 (9%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V     V  S  +      +   +                 +      +   ++    +
Sbjct: 881  QVPLANFVTRSPQQKVSSITRKDGLYSMEVKANIEDGFMENGKAVTPDNKVAEVQAWLDQ 940

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             T    +  +          S   + K  +  +     +L+ ++  F W   +  +T + 
Sbjct: 941  QTWPSSVQFVFKGADEEQAESMAFLGKAAIASLFLMFIILLTMYNSF-WQTIITLVTVIF 999

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFR 758
              +   LG  A       +     V+ L G  VN+ +V+ D   R+R+        +  R
Sbjct: 1000 AVVGVLLGLMATGQKFSVIMTGTGVIALAGIVVNNAIVLIDTFNRLREE------GVETR 1053

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMA-----------VWGGSVIG----SFAIPMAF 803
            + + K+  + L   + T++   + ++PMA           +  G +        +  +  
Sbjct: 1054 EAVLKTSAQRLRPIMLTTVTTILGLVPMATQINMDFFSRTISMGGITSVWWVQLSTAIIS 1113

Query: 804  GIVVAASSSIFIAAPILLF 822
            G+  +   ++ +   +L  
Sbjct: 1114 GLAFSTILTLVMIPSMLAL 1132



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/128 (16%), Positives = 50/128 (39%), Gaps = 7/128 (5%)

Query: 695 GAITTLILDITKTLG--FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           G +  L + ++  +G    AL GI  N+  +  ++  +G  V+  +VV +      +  +
Sbjct: 356 GMLVGLSVPVSFAVGFLILALAGITVNMMVLFGMVLTVGMLVDGAIVVTE---YADRKLS 412

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI--PMAFGIVVAAS 810
             +   +   ++        V ++     + LP+ +W G      +    M   ++ A+ 
Sbjct: 413 EGMPADEAYKRAAQLMFWPVVSSTATTLAAFLPLLLWPGVPGEFMSYLPIMVIVVLTASL 472

Query: 811 SSIFIAAP 818
            +  I  P
Sbjct: 473 LTALIFLP 480


>gi|217975384|ref|YP_002360135.1| CzcA family heavy metal efflux pump [Shewanella baltica OS223]
 gi|217500519|gb|ACK48712.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS223]
          Length = 1017

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/591 (11%), Positives = 169/591 (28%), Gaps = 42/591 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD--EDDFVN 67
           L+ +I  + +++A         LD FP   P               ++L+      + + 
Sbjct: 14  LFVLIVALIIMLAGARAWFSIPLDAFPDISPTQ-----------VKIILKAPGMTPEEIE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             + +  +     +  + I   + +   + ITL F +         +V+  +  V     
Sbjct: 63  AQITVPIETELLGIPHQSILRSTTKYAISDITLDFDEGTDIYWARQQVSERIAAVWDSFP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 +   +T      + S   ++      +E+   +  +   Q+             
Sbjct: 123 EGVTGGVAPMSTPLSEIFMFS---LENPNLSLMERRQLLEWEIRPQLRTVAGVADVNILG 179

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                      P+ +     + A +    V  N+++      +                 
Sbjct: 180 GYAKSFSVTPKPAAMAAAGVSFAALQQAIVENNHNEGAGKLTI----------------- 222

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
              G       A         +  +      AR +      +I                 
Sbjct: 223 ---GTDTIIVRAEGRIDDIDELKQLVIKADDARVYRLQDLADIQIGHLARYGAVTKDGNE 279

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             +A+       +    ++        +                      +         
Sbjct: 280 TAEALIIALKDANTAQVVKNIKEKLDQISLTLPEGSQINTFYDRANLINTAIDTISNALF 339

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               LV+I+L + +   +  LV   S+ L  ++T  ++     +  L S+ G+V+ IG+ 
Sbjct: 340 EAVVLVIILLALFLGNVRAALVVSLSLPLAALMTFLMMDYFNLSANLMSLGGLVIAIGML 399

Query: 428 VDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           VDS+++V E +      ++       +          +    +  +I    L       G
Sbjct: 400 VDSSVVVVENMVNLIATKQRLPRLHLIFRATKDVAIPVVSGTVIVMIVFSPLLTLNGLEG 459

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A+T+  ++L ++  +++++  +  +++  K  K        +   +        
Sbjct: 460 KLFTPVAVTIVFAMLSALVLSLTVIPVIASYLVNEKAAKEPKAIEKLKQLYLGSLKGTFS 519

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            + RF  +  S+L     +  L           +G I L +  +  + L  
Sbjct: 520 HQKRFIVIAFSLLIVSLGLFGL-VGKTFMPTLDEGDIILQLEKSPSISLEA 569



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 82/231 (35%), Gaps = 3/231 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +            +      E    + +  +  ++    + ++    +I+  +P  +
Sbjct: 256 LQDLADIQIGHLARYGAVTKDGNETAEALIIALKDANTAQVVKNIKEKLDQISLTLPEGS 315

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             NT      +    I      +  + + ++I + +       AL    +L L    T  
Sbjct: 316 QINTFYDRANLINTAIDTISNALFEAVVLVIILLALFLGNVRAALVVSLSLPLAALMTFL 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               F +  NL ++  ++  IG  V+  VVV + M  N+      +    LI ++  +  
Sbjct: 376 MMDYFNLSANLMSLGGLVIAIGMLVDSSVVVVENMV-NLIATKQRLPRLHLIFRATKDVA 434

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              V  ++   I   P+    G     F  P+A  IV A  S++ ++  ++
Sbjct: 435 IPVVSGTVIVMIVFSPLLTLNGLEGKLF-TPVAVTIVFAMLSALVLSLTVI 484



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 86/239 (35%), Gaps = 12/239 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ +L            + N    +          + V E+  K   EI   S    + 
Sbjct: 785  SDVATLSYKQGPILIEREQGNRFSVITTNVQGRDIVSFVEELNAKIAQEIKLPSGYSVSF 844

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +  +      ++ + I+   + + ++  F      G I   +       G  +L+ 
Sbjct: 845  GGEFENQQRATSNLLLVIPIAIALITLILFTTFGSLAKAGLILANV-PFAMMGGIVSLYL 903

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   ++ A    + L+G +V + VV+     +  K   +  + R+ +++     L   +
Sbjct: 904  SGEYLSVPASVGFIALLGVAVLNGVVMVS-YYEQTKHMFS--NLRERVEQGAARRLRPIL 960

Query: 774  YTSMAA-FISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             T        ++P+      G  +    AI +  G++ +  +++++  PIL F  + R 
Sbjct: 961  MT-ATTAMFGLMPLVFASGPGAEIQKPLAIVVIGGLLTSTITTLYLL-PILYFWLEKRK 1017


>gi|332716063|ref|YP_004443529.1| AcrB/AcrD/AcrF family protein [Agrobacterium sp. H13-3]
 gi|325062748|gb|ADY66438.1| AcrB/AcrD/AcrF family protein [Agrobacterium sp. H13-3]
          Length = 1047

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/611 (11%), Positives = 155/611 (25%), Gaps = 44/611 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L   +   GL            +   P                     L    
Sbjct: 9   RPVATTLLAIGLVLAGLA-----GFRLLPVAALPKVDFPTIS---------VSSSLSGAS 54

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +     +    +        +     + I L F  +R  +  A  V   +   
Sbjct: 55  PQTMATSVTTPLVKQFETIPGVSEISATNTLGNSSIVLQFDLNRDIDAAAADVQAAISRA 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  +         T    + VL    I+       +            +       Q
Sbjct: 115 QRQLPSNMTTTPSYRKTNPADAPVLL-LAINSKEMPTSKVDEIAENIISPLLSTISGVAQ 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +    DPS+L+        ++      NN                     
Sbjct: 174 VSIYGAQTYAVRIGLDPSQLQARGLGVDTVTTAIAQANNQVPVG---------------- 217

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +        A+           +                N+   +     G  
Sbjct: 218 ----ALQNDNQRLTIEADTQRTDAAAFRSLVVATSNGASIHLGDIANVTDSIDNPNAGSW 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++        LR    P     V      A   + +  
Sbjct: 274 FDGEQAIVLAVQRQPDANTVDVVDAIRAKLPALRQQLPPSVNINVMNDASTAIKDAIADV 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T  +  GLV+ V+++   +    ++   ++ L++I     + +LG ++   S+ G+ L
Sbjct: 334 QFTLLLTIGLVVAVIYLFTGHLTATIIPGLAVPLSLITAFGAMYVLGYSIDNISLLGLTL 393

Query: 423 GIGLAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            +GL VD  I++ E I      K  ++  +   G +    TI   +I+ +   + +   G
Sbjct: 394 SVGLVVDDAIVMLENILRLHEEKGLTMREAALQGAAEVSGTILSMSISLVAVFIPILLMG 453

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-----KSIDINPLSRFFL 533
           G   R    F + + L+I+ S   ++++   +   +  +        +  D        L
Sbjct: 454 GVIGRLFNEFGMVVTLAIMASALVSLTVTPMLASRLSGHSSRPPAIIRWFDAGFERTLRL 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +       R          +             +  +  G + +   A   +  + 
Sbjct: 514 YGKAVGWCLSHRRVVLGAFLASVAASLYLFETLPSSFFPQEDIGRLSVSTQAREDISYTA 573

Query: 594 VRSNLESLQIG 604
           +R     +   
Sbjct: 574 MRDLQAQVADQ 584



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/218 (11%), Positives = 70/218 (32%), Gaps = 5/218 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V+ Q           +   +     ++ P   I         I   +       ++   +
Sbjct: 284 VQRQPDANTVDVVDAIRAKLPALRQQLPPSVNINVMNDASTAIKDAIADVQFTLLLTIGL 343

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + +           +     + L +    G   + G   +  ++  +   +G  V+D +
Sbjct: 344 VVAVIYLFTGHLTATIIPGLAVPLSLITAFGAMYVLGYSIDNISLLGLTLSVGLVVDDAI 403

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG--- 795
           V+ + +          ++ R+   +   E  G  +  S++     +P+ + GG +     
Sbjct: 404 VMLENIL--RLHEEKGLTMREAALQGAAEVSGTILSMSISLVAVFIPILLMGGVIGRLFN 461

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            F + +   I+ +A  S+ +   +   +    ++   I
Sbjct: 462 EFGMVVTLAIMASALVSLTVTPMLASRLSGHSSRPPAI 499



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 89/234 (38%), Gaps = 6/234 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            SN  +L             +     + +   D VA +     + +  T I     +  + 
Sbjct: 781  SNFATLTRTQAPVTINQTGQLVSTTVSFNLPDGVALSDATSRIDQIKTTIGLPQDVFTSY 840

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                 I ++      + ++ + + + + + + ++ +   L  ++ L       L    + 
Sbjct: 841  GGTAAIFQQSQGNTGILILAAVLTIYVVLGVLYESFIHPLTILSGLPAAAFGALVALKVM 900

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G++F++ A+  +L LIG    + +++ D   + ++    +      I ++        + 
Sbjct: 901  GMDFSIIALIGLLMLIGIVKKNAIMMIDVAVELIRE--KAEPPTRAIHEACVRRFRPIMM 958

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            T+  A +  LP+A+  G    +     + +  G++V+   ++FI   I + +  
Sbjct: 959  TTFCALLGALPIALGSGASSELRQPLGVAVVGGLIVSQLLTLFITPVIFVEMDR 1012


>gi|295133653|ref|YP_003584329.1| transport related hypothetical protein [Zunongwangia profunda
           SM-A87]
 gi|294981668|gb|ADF52133.1| putative transport related membrane protein [Zunongwangia profunda
           SM-A87]
          Length = 1038

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/607 (11%), Positives = 162/607 (26%), Gaps = 36/607 (5%)

Query: 14  ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMY 73
           +  + LL      + +  +D FP       I + +   G S          +++GF+   
Sbjct: 1   MTVLALLYFSVLAIQKIKVDIFPEVEAP-AIYIAMPYGGLS--------PAYMDGFMSNE 51

Query: 74  SDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKN 133
             ++  F+       F   Q    + LSF           +V   +    + L       
Sbjct: 52  FQKVLVFVGGVKNMEFKSVQGLTLMKLSFYPGTDMAQAQAEVATQVSRAMAFLPPGAVPP 111

Query: 134 LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQL 193
            +V        +       D       E     I +                    +  +
Sbjct: 112 QVVRFDAGAQPVGQIVFESD--QRSTGELQNLAITRIRPSFVNIPGISAPAPFGGNVRTM 169

Query: 194 PGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIH 253
                P  ++    T   +       N         +           L   + +     
Sbjct: 170 VINVKPEEMQAYGLTADNILEAVAKNNFPSPAGNVQIGNTNYMAPVNTLELSREDFMNTP 229

Query: 254 LNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIP 313
           +                            F      +           +           
Sbjct: 230 VKT--------------------GSGPTVFVRDVATVTDGADKTTAYALANGKRTVYLPI 269

Query: 314 SGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV 373
             KA  S    I        ML                      + S       + A L 
Sbjct: 270 IKKADASTLAAINNLKDAMPMLSDALPEDVSIKFVFDQSTYIENALSNLLHEGILGAVLT 329

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
            +++ + +   +  L+   +I + V+  + +L LLG T+ + +++G+ L IG+ VD   +
Sbjct: 330 GLMVLLFLGDKRGALIVVLTIPIAVLTAIIMLYLLGQTINIMTLSGLALSIGILVDEATV 389

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLFFFGGGAVRGFAI 490
             E I +     ++   ++             I    +  LI + ++           +I
Sbjct: 390 TIENIHQHFEMEKTKQRAILDALLEISIPKLLILLCILAVLIPSFMMVGIPRDMFMPLSI 449

Query: 491 TMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF--W 548
            +G +++ S   + + +  +  +I++    K  D             +     + R+   
Sbjct: 450 AVGSAMIASFLASQTFIPVVANWIMKKHPQKHSDTKKSRFDRFKGRYLKFIQQKERYKKP 509

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                +L  I    +LF       +   G   L +    PV  ++ ++    L + +   
Sbjct: 510 IFFGYLLVVIALSGVLFVSIGTDILPPSGSKDLQLRIKAPVGSALDQTEEYVLAVENHIR 569

Query: 609 QNFDGEK 615
           +    +K
Sbjct: 570 EQIAPDK 576



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 97/288 (33%), Gaps = 6/288 (2%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
              V  ++     S  +                 L  L  +P  +S V  ++  L +    
Sbjct: 734  RFVSKNVWVDPNSGLVFQVQVQLPENQVNSLNDLQNLPLKPGAMSPVLDDVADLSLATEP 793

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
             Q      N  V +      S   +   ++ K       P             +  E + 
Sbjct: 794  GQVNRKGPNRFVTVTANTNHSDLGSASRKVRKILSELDAPPRGYSVRMAGEVNVLSETLS 853

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK-TLGFFALFGIEFNLTAVAAV 726
                G++++ + + + +   ++ +     I  +I  +   +L   +L G   NL +   +
Sbjct: 854  GLQSGLLVAIVVIFLMLTAYYQSFKTSLVILGIIPAVVAGSLLSLSLLGSTLNLQSYMGM 913

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +  +G SV++ V++ +  +  +       +  +    ++       + T++A    ++PM
Sbjct: 914  IMAVGVSVSNAVLIIN--QSELFRKEKLENAAESSLLAVASRFRPILMTALAMIAGMIPM 971

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            A+    GGS +      +  G+V +  +S+ +   I    Y       
Sbjct: 972  ALGLGDGGSQVAPLGQAVIGGLVFSTFTSLLVLPFIYTIAYANTQPKK 1019



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/214 (12%), Positives = 71/214 (33%), Gaps = 4/214 (1%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           +  +       A   + + +      +    +I+        I   L      G++ + +
Sbjct: 269 IIKKADASTLAAINNLKDAMPMLSDALPEDVSIKFVFDQSTYIENALSNLLHEGILGAVL 328

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
             L+ +        AL  + T+ + +   +    L G   N+  ++ +   IG  V++  
Sbjct: 329 TGLMVLLFLGDKRGALIVVLTIPIAVLTAIIMLYLLGQTINIMTLSGLALSIGILVDEAT 388

Query: 739 VVYDRMRK--NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           V  + + +   M+          L++ SI + L   +   +A  I    M      +   
Sbjct: 389 VTIENIHQHFEMEKTKQRAILDALLEISIPKLL--ILLCILAVLIPSFMMVGIPRDMFMP 446

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +I +   ++ +  +S      +  +I     + 
Sbjct: 447 LSIAVGSAMIASFLASQTFIPVVANWIMKKHPQK 480



 Score = 38.1 bits (86), Expect = 5.7,   Method: Composition-based stats.
 Identities = 63/566 (11%), Positives = 173/566 (30%), Gaps = 70/566 (12%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            +   +   L  +I   G+L           +      +P +      DL+      L + 
Sbjct: 507  KKPIFFGYLLVVIALSGVLF----------VSIGTDILPPSGSK---DLQ------LRIK 547

Query: 62   ED-----DFVNGFLQMYSDELRSFLKKEGIGVF-------------------SMRQIQNK 97
                   D    ++    + +R  +  + + +                    +    +  
Sbjct: 548  APVGSALDQTEEYVLAVENHIREQIAPDKLEITSGFVGMHSPNTPINPIFLFTSGSQEAI 607

Query: 98   ITLSFADSRF--KENIADKVTLFLQGVNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQ 154
            +  S  +S     + + D +   L+    +L    +   L+     +  +  ++   + +
Sbjct: 608  LQFSLPESFDVPVDELKDDLRTSLKNEFPELQFTFEPMELVEKIMGQGYNTPIAIEVLGK 667

Query: 155  VISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSF 214
             +      + +I     D+  +++     L        +    D  R+ QL  T  ++S 
Sbjct: 668  NLDQVTLYAHKITDALKDENYLTD---VHLNEPVDYPSISINVDRERVAQLGLTMREVST 724

Query: 215  HKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISF 274
                  +S +                  V   V +                ++       
Sbjct: 725  ALTTATSSSR-----------------FVSKNVWVDPNSGLVFQVQVQLPENQVNSLNDL 767

Query: 275  DEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAM 334
              +  +        +    L++  +   +     N+ +         +    +  +   +
Sbjct: 768  QNLPLKPGAMSPVLDDVADLSLATEPGQVNRKGPNRFVTVTANTNHSDLGSASRKVRKIL 827

Query: 335  LRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSI 394
                + P   ++     V     + S  +    +   ++ ++L       K  LV    I
Sbjct: 828  SELDAPPRGYSVRMAGEVNVLSETLSGLQSGLLVAIVVIFLMLTAYYQSFKTSLVILGII 887

Query: 395  FLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLD 453
               V  +L  LSLLG+TL L S  G+++ +G++V + +L+  +     ++  ++   S  
Sbjct: 888  PAVVAGSLLSLSLLGSTLNLQSYMGMIMAVGVSVSNAVLIINQSELFRKEKLENAAESSL 947

Query: 454  MGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAM 510
            +  +  +  I  + +  +   + +      GG  V      +   ++ S FT++ ++  +
Sbjct: 948  LAVASRFRPILMTALAMIAGMIPMALGLGDGGSQVAPLGQAVIGGLVFSTFTSLLVLPFI 1007

Query: 511  MIFIIRYKKMKSIDINPLSRFFLIPD 536
                    + K + ++P  +      
Sbjct: 1008 YTIAYANTQPKKVSLDPDDQHSKYYQ 1033


>gi|297544502|ref|YP_003676804.1| protein-export membrane protein SecD [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296842277|gb|ADH60793.1| protein-export membrane protein SecD [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 411

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 121/383 (31%), Positives = 217/383 (56%), Gaps = 29/383 (7%)

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           + + +     V   AI +++ +IR R+D +G+++  I + GS+RI ++LPG  DP R  +
Sbjct: 51  VYVLEEAQGNVTQDAINKAIAVIRNRVDALGVTQPVISQQGSNRIRVELPGMNDPDRAIE 110

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA++ F                             + +V ++G ++  + A +   
Sbjct: 111 IIGKTAQLKF--------------------------IGPDGQVILTGANVKDSKAVYAQT 144

Query: 265 T---HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +P V +  D  G ++F E T+  + +P+A+VLD +V++AP +   I +G A I+G
Sbjct: 145 ETGVQQPEVTLVLDAEGTKKFAEATQKFLNQPIAIVLDDKVISAPTVQSVITNGNAVITG 204

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               + A  LA ++RAGSLP+ L  +   +VGA LG  +        + G++LI+LFM  
Sbjct: 205 LKDFQEASELATLIRAGSLPVTLKPIAYSSVGATLGPSAYNAAVKVGIYGVLLILLFMAA 264

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   G++AD ++ + +++ L + +L   TL LP IAG +L IG+AVD+N+L+ ER +EE
Sbjct: 265 FYRLPGIMADVALIIYILINLIIYALFNITLDLPGIAGFLLSIGMAVDANVLIFERFKEE 324

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  +S+  +LD GF RA++ +FD+N+T +I  ++LF+ G G V+GFA+T+ + ++ S F
Sbjct: 325 LRAGKSLRAALDAGFRRAFTAVFDANMTTIIGAIILFYMGSGNVKGFALTLLIGVISSFF 384

Query: 502 TAISIVRAMMIFIIRYKKMKSID 524
           TAI++ R ++  ++     + I 
Sbjct: 385 TAITVTRFLLHALLEMDLTRDIK 407



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 72/172 (41%), Gaps = 4/172 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VG  +        +   I   + +L+++   ++    + A   LI+ I   L  +AL
Sbjct: 232 YSSVGATLGPSAYNAAVKVGIYGVLLILLFMAAFYRLP-GIMADVALIIYILINLIIYAL 290

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F I  +L  +A  L  IG +V+  V++++R ++ ++      S R  +D           
Sbjct: 291 FNITLDLPGIAGFLLSIGMAVDANVLIFERFKEELRA---GKSLRAALDAGFRRAFTAVF 347

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +M   I  + +   G   +  FA+ +  G++ +  ++I +   +L  + +
Sbjct: 348 DANMTTIIGAIILFYMGSGNVKGFALTLLIGVISSFFTAITVTRFLLHALLE 399



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/161 (12%), Positives = 50/161 (31%), Gaps = 6/161 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR+  ++     +I    +       +        P    ++ + LGLDLRGG +++ E 
Sbjct: 1   MRSRGFIKFFSVIIVAAIVAYIAFFGIKAGNYSISP---VQDHMRLGLDLRGGVYVLEEA 57

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFL 119
              +     +      +R+ +   G+    + Q   N+I +        +   + +    
Sbjct: 58  QG-NVTQDAINKAIAVIRNRVDALGVTQPVISQQGSNRIRVELPGMNDPDRAIEIIGKTA 116

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
           Q                   + +     ++  + Q     +
Sbjct: 117 QLKF-IGPDGQVILTGANVKDSKAVYAQTETGVQQPEVTLV 156


>gi|315500800|ref|YP_004089601.1| heavy metal efflux pump, CzcA family [Asticcacaulis excentricus CB
           48]
 gi|315418812|gb|ADU15450.1| heavy metal efflux pump, CzcA family [Asticcacaulis excentricus CB
           48]
          Length = 1048

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/534 (11%), Positives = 144/534 (26%), Gaps = 46/534 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + VIL ++    G + A+      + +D  P       I                  
Sbjct: 11  RNRFFVILATLAIVAGGIFAI----KATAVDALPDLSDVQVI---------IRTPYAGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTDLYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  + K +L    T                     +           ++       +
Sbjct: 118 QGRLPAEAKPSLGPDATGVGWVYEY-ALVDKTGQHDLSQLRSLQDWFLRYELKSLPGVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L     T  ++       N    G +  +            
Sbjct: 177 VASIGGMVKQYQVVLDPMKLAAYGITHQQVVSAIQNANGESGGSVLELAEAEYMVRAGGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                     + +     G              P        +
Sbjct: 237 LKTLDDFRA------------------IPLKTAAGGVPVTLGEVATVQIGPEMRRGVAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI       A L+    P    +           +    
Sbjct: 279 NGQGEVAGGVVILRSGKNAMETISAVKAKLAELKKSLPPGVEVVTTYDRSQLIGRAIGNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        +V IV  + + + +  LVA  ++ + V++ L ++   G    + S+ GI +
Sbjct: 339 REKLIEEFLVVAIVCALFLWHVRSALVAILTLPIGVMIALIVMHSQGVNANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNITAL 471
            IG  VD+ +++ E   ++                  +  +    +     +F S +   
Sbjct: 399 AIGAMVDAAVVMIENAHKKVEHWEHDHPGAVLKGDERWRVITEAATEVGPALFLSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            + + +F      G      A T   ++  +   ++++V  +M ++IR K  K 
Sbjct: 459 FSFIPVFTLQGQEGRLFSPLAFTKTYAMAGAAILSVTLVPVLMGYLIRGKIPKE 512



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/242 (15%), Positives = 79/242 (32%), Gaps = 9/242 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +  ++I +               +     D    + V ++ K    ++     +     
Sbjct: 800  TVAKVEIAEGPPMLKTENGRPSTWVYIDVRDRDLASVVGDLQKAVAKDVKLSPGVSIAYS 859

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FALF 714
               +  +  I +  + V  + + + + +++ F   F   A+  L L    T G     L 
Sbjct: 860  GQFEYLQRAIERLKLVVPATLVIIFLLLYVTFG-RFDEAALIMLTLPFALTGGIWTLYLL 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINETLGR 771
            G   ++      + L G S    V++   ++  +K      S R+    + +     +  
Sbjct: 919  GFHQSVATGVGFIALAGVSAEFGVIMLIYLKDALKARGPDPSPREVETAVSEGALLRVRP 978

Query: 772  SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               T       +LP+      G  V+   A PM  G++ A   S+ +     L I   R 
Sbjct: 979  KAMTVCVILAGLLPILFGHGAGSEVMSRIAAPMIGGMLTAPLLSMLVVPAAYLLIRRRRR 1038

Query: 829  KN 830
             N
Sbjct: 1039 SN 1040



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/232 (16%), Positives = 80/232 (34%), Gaps = 14/232 (6%)

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G    L   +       A    L  +KK +   V + T  +   +  +    L  K 
Sbjct: 283 EVAGGVVILRSGKNAMETISAVKAKLAELKKSLPPGVEVVTTYDRSQLIGRAIGNLREKL 342

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           I   ++ AI   +++W       AL AI TL + +   L      G+  N+ ++  +   
Sbjct: 343 IEEFLVVAIVCALFLW---HVRSALVAILTLPIGVMIALIVMHSQGVNANIMSLGGIAIA 399

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFR--------DLIDKSINETLGRSVYTSMAAFI 781
           IG  V+  VV+ +   K ++ +                +I ++  E       + +    
Sbjct: 400 IGAMVDAAVVMIENAHKKVEHWEHDHPGAVLKGDERWRVITEAATEVGPALFLSLLIITF 459

Query: 782 SVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           S +P+    G     F   A    + +  AA  S+ +   ++ ++   +   
Sbjct: 460 SFIPVFTLQGQEGRLFSPLAFTKTYAMAGAAILSVTLVPVLMGYLIRGKIPK 511


>gi|126649812|ref|ZP_01722048.1| Acriflavin resistance plasma membrane protein [Bacillus sp. B14905]
 gi|126593531|gb|EAZ87476.1| Acriflavin resistance plasma membrane protein [Bacillus sp. B14905]
          Length = 1031

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/635 (11%), Positives = 180/635 (28%), Gaps = 41/635 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  +I   G+         +  ++  P       I +G         V   
Sbjct: 11  LKNKLAVWLLTIIITVSGIYSG-----TRMKMESIPDISIPYLIVMG---------VYPG 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   L +  ++    L+       +      ++ + +      +    ++   L 
Sbjct: 57  ATPEQVMNDLSIPFEKSIESLEDVKAVYSTSSSNVAQVQVEYDYGIDMDEKKRQLEAALD 116

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L    ++  ++  +   + +V    ++       ++ +  +    + +I   +  
Sbjct: 117 NLK--LPEGAQEPTIMAISMNMMPVV--ALSVSSSKEDIVDLTSTVEDVLLPKIEKIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                + + + Q+  + D  ++  L  T   +       + S    +      + + G Q
Sbjct: 173 ASATITGQHIEQVSFKYDEEKMAALGLTEESVKQMIQASDMSLSLGL-----YQFTVGEQ 227

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +  D    S   L        P    P   +   ++         +             
Sbjct: 228 AVSVDGKVQSVDELKDLLIPVTPSATNPSPFVRLGDIAKIEVEGKVQSVSRT-------- 279

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +    +     L        L      +          S  
Sbjct: 280 ---NGQDAIAIQIVKGQDANTVTVVNAVKDLMKDEEK-RLDGLNVDISLDQGAPIEDSVF 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      + ++++ + +   K  +++  SI ++V + L LL+ +  TL + ++  I
Sbjct: 336 TMIEKAVFGGAIAVLIILLFLRDFKSTIISIVSIPVSVFMALLLLNWMDITLNIMTLGAI 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ---SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            + IG  +D +I+V E I       Q   +    +       +  I  S +  +     L
Sbjct: 396 TVAIGRVIDDSIVVVENIYRRIHLKQEKLTGRALIREATIEMFKPILSSTLVTVAVFAPL 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F GG        FA+TM  ++  S+  AI+IV A+  F+ R K       +       +
Sbjct: 456 IFVGGMVGELFMPFALTMTFALGASLLVAITIVPALSHFLFRKKLYGEKKESQHKEVGKL 515

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                    +A    +  S++     +  L    L          +  +          +
Sbjct: 516 ATWYKGVLEKALNHKIITSLIAIFLLVGSLALTPLIGFSFMGSQEEKVMYLTYTPSTGEL 575

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +             + + L        +  
Sbjct: 576 ADETAANVEKVEKELMKRKDIDILQVSITDANNVD 610



 Score = 94.4 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 91/236 (38%), Gaps = 3/236 (1%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + +E         +    +   +  ++ Q  ++V     ++ + K   + +    +  +
Sbjct: 264 IAKIEVEGKVQSVSRTNGQDAIAIQIVKGQDANTVTVVNAVKDLMKDEEKRLDGLNVDIS 323

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
              G  I   +       V   AIA+LI +     +   + +I ++ + +   L      
Sbjct: 324 LDQGAPIEDSVFTMIEKAVFGGAIAVLIILLFLRDFKSTIISIVSIPVSVFMALLLLNWM 383

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  ++D +VV + + + + L    ++ R LI ++  E     + 
Sbjct: 384 DITLNIMTLGAITVAIGRVIDDSIVVVENIYRRIHLKQEKLTGRALIREATIEMFKPILS 443

Query: 775 TSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +++       P+   G   G +   FA+ M F +  +   +I I   +  F++  +
Sbjct: 444 STLVTVAVFAPLIFVGGMVGELFMPFALTMTFALGASLLVAITIVPALSHFLFRKK 499



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 88/240 (36%), Gaps = 8/240 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L  ++ G         +  +   +                 KK     +P         
Sbjct: 791  ELVDVEEGTTLNSLSRSKGEYFATVSGTIIGDDISKATSAADKKIDKLDLPKGVTTGVAG 850

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
            V   +     + G+  ++ +   +   + + F +       + +L   +        + G
Sbjct: 851  VAADMQETFTKLGV-AMLAAIAIVYFILVVTFGEGLAPFAILFSLPFAVIGAFVGLFVTG 909

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +++ +  +L LIG  V + +V+ DR+   + +    ++ R+ I ++    L   + T
Sbjct: 910  QTISVSVMMGLLMLIGIVVTNAIVLVDRI---IHMEHDGLAMREAILEAGATRLRPILMT 966

Query: 776  SMAAFISVLPMAV-WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++A   +++PMA+  GGS +     AI +  G++ +   ++ +   +   +     KN +
Sbjct: 967  AIATIGAMVPMALGSGGSGLISKDLAITVIGGLLSSTLLTLVVVPIVYEMLSKMLKKNRK 1026


>gi|39996434|ref|NP_952385.1| CzcA family heavy metal efflux protein [Geobacter sulfurreducens
           PCA]
 gi|39983314|gb|AAR34708.1| heavy metal efflux pump, CzcA family [Geobacter sulfurreducens PCA]
 gi|298505443|gb|ADI84166.1| metal ion efflux pump, RND family, inner membrane protein
           [Geobacter sulfurreducens KN400]
          Length = 1045

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 81/605 (13%), Positives = 172/605 (28%), Gaps = 46/605 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +++L++++   G+         ++ +D  P  +  N++ +  D  G         
Sbjct: 11  RNRVIILMLFALVIGWGIWAV-----YKTPVDAIPD-LSDNQVIVFTDFPG--------R 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          L +      S     + I + F D         +V   L  
Sbjct: 57  SPQVVEDQVTYPLAVNLQGLPRVKAVRASSAFGFSMIYVIFDDKADIYWARTRVLERLNY 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       L    T        +       +          +R    Q+       
Sbjct: 117 AASLLPAGVVPTLGPDGTGVGHVFWYTLEGKGYDLEQLRTLQDWFVRY---QLNTVPGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + +   + DP +L       + +       NN   G +            + 
Sbjct: 174 EVASIGGFVREYQVDLDPHKLFAYNIKVSDVMEAIKAANNDVGGRLLEQADAEYLIRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+   +I  I +          T   V ++   +MG      +   N            
Sbjct: 234 YVKSPADIENIVVTAD----MRGTPVYVKNLGTVQMGGAIRRGLLDLNGEGE-------- 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +    I+        L  G  P                +   
Sbjct: 282 ------VVGGIVVMRYGENAKDVIDRVKEKITALEKGLPPGVKIKTAYDRSDLIERAIHT 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K      + +V +V+ + +L+ +  LV   ++ + V++    + L+G +  + S+ GI 
Sbjct: 336 LKRALTEESIVVSLVVLVFLLHFQSALVIVLTLPIAVLIAFITMKLMGVSSNIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + IG+ VD+ +++ E             +       +     +    IF S    +++ V
Sbjct: 396 IAIGVLVDAGVIMVENCYRHLSELPEEERKARRLEVIIASAKQVGRAIFFSLAIIVLSFV 455

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   S++ S   AI++V  +M F +R K            F 
Sbjct: 456 PVFLLEGQEGKLFHPLAFTKTFSMVGSALIAITLVPVLMYFFMRGKMPLESANPVSRFFI 515

Query: 533 LIPDC--IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            +           +     + +  L     + +         +D    + + V       
Sbjct: 516 RLYGPVIRWCLKWKKTVIALNMVALLVAVPLYMKLGSEFMPPLDEGSLLYMPVTLPNVSI 575

Query: 591 LSVVR 595
               R
Sbjct: 576 TEAKR 580



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 75/205 (36%), Gaps = 11/205 (5%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAIT 698
            + + E               +   ++  K  + V+I A  ++I+I + F ++ AL  ++ 
Sbjct: 834  QAVVEKQLKLPPGYYVSWSGQWENQVRAKARLQVLIPAGIVIIFILLYFTFHSALEASMV 893

Query: 699  TLILDITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY----- 751
             L +      G +  A  G   ++      + L G +V   VV+   + + +        
Sbjct: 894  MLSVPFALVGGVYLVAALGYNMSVAVWVGFIALYGVAVETGVVMVIYLHEALDKKLMAGP 953

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
             T     D   +     L   + T   A + ++P+      G  V+   A PM  G++ +
Sbjct: 954  VTEQDIYDATYEGAVLRLRPKLMTVAVALMGLVPIMWSSGTGADVMKPIAAPMIGGMISS 1013

Query: 809  ASSSIFIAAPILLFIYDWRAKNARI 833
            A   + +   I + +     K  ++
Sbjct: 1014 AIHVLIMTPVIFVLMKKHDLKKGKL 1038



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 54/144 (37%), Gaps = 6/144 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRK 746
           +  AL  + TL + +        L G+  N+ ++  +   IG  V+  V++ +   R   
Sbjct: 358 FQSALVIVLTLPIAVLIAFITMKLMGVSSNIMSLGGIAIAIGVLVDAGVIMVENCYRHLS 417

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAF 803
            +          ++I  S  +      ++     +S +P+ +  G    +    A    F
Sbjct: 418 ELPEEERKARRLEVIIASAKQVGRAIFFSLAIIVLSFVPVFLLEGQEGKLFHPLAFTKTF 477

Query: 804 GIVVAASSSIFIAAPILLFIYDWR 827
            +V +A  +I +   ++ F    +
Sbjct: 478 SMVGSALIAITLVPVLMYFFMRGK 501


>gi|312128236|ref|YP_003993110.1| protein-export membrane protein secd [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311778255|gb|ADQ07741.1| protein-export membrane protein SecD [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 415

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E  +  +   II  + + +++ I ++    L A   L+  I   +       
Sbjct: 230 AIGPSLGNEAFKSTLKAGIIGILLVFLFMIIFYRLP-GLIADIALVAYIVILVAIVGYAK 288

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I   L  +A ++   G +V+  ++++ R+++ ++   +  + R  +D      L   + +
Sbjct: 289 ITLTLPGIAGIILSAGMAVDANILIFARLKEELR---SGKTLRAAMDAGFRRALNAVIDS 345

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++   I+ + +   G   I  FA  +  GIVV+  ++I +   +L
Sbjct: 346 NVTTIIAGIVLLFLGTGPIKGFAWTLTIGIVVSFFTAITVTRFLL 390



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 122/407 (29%), Positives = 215/407 (52%), Gaps = 28/407 (6%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              +K +      K    ++ +   +      +E ++++IR R+D     ++T    GS 
Sbjct: 35  PSVQKVIRYGLDLKGGVYIVYEAEKENPTRREMESALQLIRTRLDMRNFYDATATIQGSK 94

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI +++PG +DP    Q +G TA + F                                +
Sbjct: 95  RIRVEIPGVKDPDEAIQYIGRTALIEF--------------------------KGPSGDL 128

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +SG ++    A         VV + FD+ G ++F E T+  +G+ + + LDG++++ PV
Sbjct: 129 IVSGRNVVD--AYAQQTASGYVVALKFDKEGTKKFAEGTKKYLGQNIGIYLDGKLISNPV 186

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I +G+A I G   +E A  LA  ++AG+LP  LN++E + +G  LG+++      A
Sbjct: 187 VQAEIDNGEAVIEGMKDLEEAKTLAQQIKAGALPFALNVIESKAIGPSLGNEAFKSTLKA 246

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + G++L+ LFMI+ Y   GL+AD ++   +++ +A++     TLTLP IAGI+L  G+A
Sbjct: 247 GIIGILLVFLFMIIFYRLPGLIADIALVAYIVILVAIVGYAKITLTLPGIAGIILSAGMA 306

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+NIL+  R++EE R  +++  ++D GF RA + + DSN+T +IA +VL F G G ++G
Sbjct: 307 VDANILIFARLKEELRSGKTLRAAMDAGFRRALNAVIDSNVTTIIAGIVLLFLGTGPIKG 366

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           FA T+ + I++S FTAI++ R ++  II     K I      +   +
Sbjct: 367 FAWTLTIGIVVSFFTAITVTRFLLTSIINTGLFKDIRWYGGKKTREV 413



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 41/121 (33%), Gaps = 6/121 (4%)

Query: 1   MRNNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N      L   ++      I       +      PS   +  I  GLDL+GG ++V E
Sbjct: 1   MQNKSLAKFLIGCLVIAFAFYIVFFGL--EIGTASIPSV--QKVIRYGLDLKGGVYIVYE 56

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
            ++++     ++     +R+ L        +     + +I +     +  +     +   
Sbjct: 57  AEKENPTRREMESALQLIRTRLDMRNFYDATATIQGSKRIRVEIPGVKDPDEAIQYIGRT 116

Query: 119 L 119
            
Sbjct: 117 A 117


>gi|221211975|ref|ZP_03584953.1| acriflavin resistance protein [Burkholderia multivorans CGD1]
 gi|221168060|gb|EEE00529.1| acriflavin resistance protein [Burkholderia multivorans CGD1]
          Length = 1072

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 82/684 (11%), Positives = 175/684 (25%), Gaps = 44/684 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G     P  L ++  D FPS                  +V   
Sbjct: 8   LRRPYTFVVLALLIFIAG-----PLALLRTPTDIFPSIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMAKRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + D +     +           Q+   
Sbjct: 112 NAASILRILPPGTLPPNIITYNASTVPILQLGLSSDTLAEQ--QLYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + D   L+        +       N    G    +     + 
Sbjct: 170 QGAAVPLPFGGKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGTAKIGTREYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     ++    +G    +     ++    A  
Sbjct: 230 QMNGSTQTVAAL--------------------NNLPVRTVGGNVVYVRDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    I+    +   + AG          +        
Sbjct: 270 TNIVRADGRRAALLTVEKTGSASTLTIIDQVKAMLPKIEAGLPKALHIAPLDDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   SI L V+ +L  LS LG T+ + ++
Sbjct: 330 AVQGVVREALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSLLALSALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I         +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLELGAPLEDAILTGAGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G         A  +  +++ S F + ++V  + + ++R K+         +R    
Sbjct: 450 FLLTGVARYLFVPLAEAVIFAMIASYFFSRTLVPTLAMALMRAKRQGRPPRGMFARLARF 509

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +F   R     +                L            G      VD   +
Sbjct: 510 QAAFEHRFEAVRLRYRALLSAAIARRRRFAAAFLLACIASAGLYAFAGQDFFPSVDTGEI 569

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R +L +     I       ++         P   +A       V      +   S+    
Sbjct: 570 RLHLRAPTGTRIEETARLTDEVEAKIRTVIPPRELAGVLDNIGVPVSGINLTYDSSDPIG 629

Query: 655 EIVGPKISRELIRKGIVGVIISAI 678
                 +             ++ +
Sbjct: 630 SEDADVMITLRPDHAPTAAYVATL 653



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 83/250 (33%), Gaps = 11/250 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++  VR                  +      L  +   S +   +++ VK  + +I    
Sbjct: 252 NVVYVRDVAHVRDGYAPQTNIVRADGRRAALLTVEKTGSASTLTIIDQVKAMLPKIEAGL 311

Query: 650 TIQNTEIVGPKISRELI--RKGIV--GVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                       S  +    +G+V   +I + +  L+ +     W   L    ++ L + 
Sbjct: 312 PKALHIAPLDDQSVFVKAAVQGVVREALIAACLTALMILLFLGSWRATLIIAVSIPLAVL 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            +L   +  G   N+  +  +   +G  V+D  V  + +              D I    
Sbjct: 372 TSLLALSALGQTINIMTLGGLALAVGILVDDATVAIENI---THHLELGAPLEDAILTGA 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY- 824
            E    +  ++++  I  +PM +  G     F +P+A  ++ A  +S F +  ++  +  
Sbjct: 429 GEIAVPTFVSTLSICIVFVPMFLLTGVARYLF-VPLAEAVIFAMIASYFFSRTLVPTLAM 487

Query: 825 --DWRAKNAR 832
                 +  R
Sbjct: 488 ALMRAKRQGR 497



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 59/158 (37%), Gaps = 7/158 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++++   + + + + F  W   L  +  L   +        +     ++ A+   +  IG
Sbjct: 898  LVLAISLVYLLMVVNFQSWLDPLVIVGGLPASLAGIAWMLFVTRTTLSVPALTGTILCIG 957

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+ +       S      ++        + T++A  I +LPMA+   
Sbjct: 958  IATANSILVVNTAREQLAG---GASPWQAALEAGFSRFRPVLMTALAMLIGMLPMALGLG 1014

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             GG         +  G+     S++     +  F++ W
Sbjct: 1015 DGGEQNAPLGRAVIGGLAFGTLSTLLFVPVLFGFVHAW 1052


>gi|296131167|ref|YP_003638417.1| MmpL domain-containing protein [Cellulomonas flavigena DSM 20109]
 gi|296022982|gb|ADG76218.1| MmpL domain-containing protein [Cellulomonas flavigena DSM 20109]
          Length = 732

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 84/590 (14%), Positives = 167/590 (28%), Gaps = 49/590 (8%)

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
           +  T D             ++    + Q    G A   G    E        L      +
Sbjct: 105 WADTGDPAFVGDDGRTTFGLVFGGPVEQGGLPGSALGEGGQLTEVVVDAMTPLLPPGATL 164

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
           ++  ++    G D G         A+     L+VL          +    +     I  +
Sbjct: 165 QVTGLDPLATGTDAGGL-NVPVKLALTVLAALVVLAWAFRSWLALVPLLTAFTAIPISYI 223

Query: 403 ALL--SLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY 460
            LL  S          I   +LGIG+A+D  +LV  R REE  +      ++      A 
Sbjct: 224 GLLLVSPFVTVHETTVIMLPLLGIGIAIDYALLVVARWREERARGTLGDEAVHAAMRTAG 283

Query: 461 STIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             +  S+    I  + +       +R   I   +    S   +++++  ++ ++ R    
Sbjct: 284 HAVAFSSGAVAIGLLTMIVLPIPLLRSLGIGGTIVTATSALVSVTMLPLLLSWVGRRTHG 343

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL----------- 569
            S+  + L R         ++ +  R W   I+    +  +  +  +             
Sbjct: 344 ASVRTSRLDRDGSGAWTRWVEGVVHRRWPAMIASTLLLLLLGGVAVNLNLDVPASDDLAS 403

Query: 570 ------------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
                         G+         V      D   +  +L +L          D     
Sbjct: 404 AGPGRDGLDTLTGAGVPSGTLASFDVYVPPGTDPDALADDLRALPGVHGVAAPDDDAWRR 463

Query: 618 LVRLQYQP-GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
                        + T         + + VP   +            ++     + ++  
Sbjct: 464 DGSAVLTVLPVEESGTPGGRATIDAVVDTVPDGVLVGGNATQQIGYVDVTYGTFLWMLGL 523

Query: 677 AIAMLIYIWIR--FKWYFALGAITTLILDITKTLGFFALF----------------GIEF 718
              +   +  R        L AI   +L     LG   L                 G   
Sbjct: 524 VALVSYVMLARAFRSLLLPLKAIVMNLLSFAAVLGAMVLVWQWGWGTQALLGIQADGAIG 583

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
               V     L G +++ +V +  R+R+    Y  +   R  + + +  T     Y ++ 
Sbjct: 584 TFVPVTLFAFLFGLTMDYEVFILSRVREE---YDRTGDTRLAVVRGVARTGRLVTYAALI 640

Query: 779 AFISVLPMAVWGGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
            F S   MA  G   +  FA  +A GI++        +    ++ +  W 
Sbjct: 641 LFFSFASMASGGELDVAIFASGIALGILLDATIVRSVLVPATVVMMGRWN 690


>gi|170726181|ref|YP_001760207.1| acriflavin resistance protein [Shewanella woodyi ATCC 51908]
 gi|169811528|gb|ACA86112.1| acriflavin resistance protein [Shewanella woodyi ATCC 51908]
          Length = 1025

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/683 (11%), Positives = 201/683 (29%), Gaps = 55/683 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  I   GL  +         L+ FP              +    +  +  
Sbjct: 9   KRPVTTSMFFVAILLFGLASS-----RLLPLEMFPGIDIP---------QVNIEVPYKGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + +        +  Q   +I L     +     + +    +  
Sbjct: 55  TPAEVERDITRVLEESLATMSGIEEMRSNSSQNGAEIELKMKWGQNVATKSLEAREKIDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++ L+   +  ++ ++  + + D+ +S A +      +Q    +   E   
Sbjct: 115 VRHLLPKDVERVLIRQFSTADMPVLNLRISSDRELSGAFDLLD---KQLKRPLERVEGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         Q+    +  +L     +   ++                           +
Sbjct: 172 QVTLYGVEQKQIEIRLNADKLSSSNISIQALNRRLR--------------------QENF 211

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +V   V  +G  +   +   + +    +  +                 +   L   LDGR
Sbjct: 212 VVNAGVLRTGSQVYQVSPKGEFRDLDDINALVLKPG----VTLGDIATVNFSLPERLDGR 267

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE-RNVGADLGSDS 360
            L            ++  +     +    +    +       + +            S  
Sbjct: 268 HLDQKYAVGLDVFKESGANLVDVSKRVMKVIESAKQDPQFNGVKLFVMEDQAYGVTSSLE 327

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I A L   VL++ +   K  LV   S+ +++ +TLA + LLG +L + S+ G+
Sbjct: 328 DLLTAGLIGALLSFAVLYLFLRNLKMTLVVVTSVPISICMTLAAMYLLGYSLNILSMMGL 387

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFC------------SLDMGFSRAYSTIFDSNI 468
           +L +G+ +D+ ++V E + +E +  ++               ++  G ++    +    +
Sbjct: 388 LLAVGMLIDNAVVVTESVLQEKQAQKNSQSSQLNDGQAESDNAILTGVNKVSLAVLAGTL 447

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-KSIDINP 527
           T  I  +   F     +  F   + ++I IS+  ++ + + ++  ++         +   
Sbjct: 448 TTAIVFLPNIFGVKVELTIFLEHVAIAICISLAASLLVAKTLLPLMLSKMHFEIEPEKKD 507

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +       +  GV   I+ +  ++ +          +    + +      
Sbjct: 508 SKLRINYQRSLNWILSHPKTSGVIALIILATTALPISMVKQDKSDGEGNNRLYINYQVEG 567

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
              L V  + +  ++    + +      +         G S         V  K+ +   
Sbjct: 568 RHSLDVTEAMITKMETYLYANKEAFQIDSVYSYFSADRGQSTLILNEDTEVDMKVLKKTI 627

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                   I  P+        G+
Sbjct: 628 REGFPKFSIAKPQFGWGNDDNGL 650



 Score = 78.6 bits (191), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 76/207 (36%), Gaps = 14/207 (6%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              AQ  + ++++          +++       +    +    I+ +      + I +   
Sbjct: 804  EEAQEEITKIMEAVNFPSGYDYSLRGGFQKQDEDEAIMATNMILAI----AMIYIVMAAL 859

Query: 688  FK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            F+        IT+++  IT         G   ++  +  +L L+G  VN+ +V+ D++ +
Sbjct: 860  FESLLLPTAIITSILFSITGVFWALLFTGTSMDIMPMIGILILMGVVVNNGIVLVDQINQ 919

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIGSFAIP 800
                        D I +  N  L   + T     + ++P+A+       GG      AI 
Sbjct: 920  MSPDLDK---LSDTISQVCNSRLRPVLMTVGTTVLGLIPLAMGDTQLGGGGPSYSPMAIA 976

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  G+  +  +S+++       +Y  R
Sbjct: 977  IIGGLTFSTVTSLYLVPLCYQALYRMR 1003



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 32/223 (14%), Positives = 84/223 (37%), Gaps = 19/223 (8%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VIISAIAMLIYIWIR 687
               RV+++++    +                     +   +   +I + ++  +     
Sbjct: 289 DVSKRVMKVIESAKQDPQFNGVKLFVMEDQAYGVTSSLEDLLTAGLIGALLSFAVLYLFL 348

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L  +T++ + I  TL    L G   N+ ++  +L  +G  +++ VVV + + + 
Sbjct: 349 RNLKMTLVVVTSVPISICMTLAAMYLLGYSLNILSMMGLLLAVGMLIDNAVVVTESVLQE 408

Query: 748 MKLYTTSISFR---------DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-IGSF 797
            +    S S +         + I   +N+     +  ++   I  LP  ++G  V +  F
Sbjct: 409 KQAQKNSQSSQLNDGQAESDNAILTGVNKVSLAVLAGTLTTAIVFLP-NIFGVKVELTIF 467

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDW-------RAKNARI 833
              +A  I ++ ++S+ +A  +L  +            K++++
Sbjct: 468 LEHVAIAICISLAASLLVAKTLLPLMLSKMHFEIEPEKKDSKL 510


>gi|85712504|ref|ZP_01043552.1| Probable Co/Zn/Cd efflux system membrane component [Idiomarina
           baltica OS145]
 gi|85693638|gb|EAQ31588.1| Probable Co/Zn/Cd efflux system membrane component [Idiomarina
           baltica OS145]
          Length = 1037

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 58/568 (10%), Positives = 152/568 (26%), Gaps = 32/568 (5%)

Query: 49  DLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFK 108
           D++              V   +          +              + I + F +    
Sbjct: 44  DVQVVVKTSYPGQAPAVVEEQVTYPLSSTLLSVPNTKSVRGFSFFGDSYIYIVFEEGTDP 103

Query: 109 ENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIR 168
                +V  +L    ++L    +  L    +                     E +     
Sbjct: 104 YWARSRVLEYLNQAQAQLPTGVQPMLGPDASGVGWIYQY-ALVDRTNTHDLGELTRIQNW 162

Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
                +   +   +      ++       DP++L++   +   ++      N+   G + 
Sbjct: 163 YLKQGLQSVKGVAEVARVGGMVETYQVVVDPTQLQRYQISLGDVTAAIRNANSEVGGSVI 222

Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
            +            ++   +                  + +                   
Sbjct: 223 EMAEAEYMVRGFGYLQSIED-----------------FQRLPIGPASSNDGVVTLGDVAH 265

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
               P        +     +   I   +   +   TI         L  G       +  
Sbjct: 266 IRVGPELRRGVADLGGQGEVVGGIIVMRYDSNALKTINRVKAQLKQLAQGLPEGIEVVTT 325

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                    S              V ++ F+ +L+ +  LVA  S+ L+V++ + +++L+
Sbjct: 326 YDRSELINASVDNLSSKLIEEMAFVAVICFIFLLHARSTLVAVISLPLSVLIAIWIMNLM 385

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC----------SLDMGFSR 458
           G T  + S+ GI + IG  VD+ I++ E   +  +                  +      
Sbjct: 386 GITANIMSLGGIAIAIGALVDAAIVMIENAHKHLQLFTDKQQRQPDSSERQKVILDACRE 445

Query: 459 AYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
              ++F S +   ++ + +F      G      A T  L++  +   +I+++  +++F+I
Sbjct: 446 VGGSLFFSLLIITVSFLPIFALQGQQGRLFEPLAYTKTLAMACAALLSITLIPVLIVFLI 505

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSIC-LLFTHGLNYGID 574
           R K                        ++     V ++I  +  ++              
Sbjct: 506 RGKIPSEEGNFITRVLVWFYRPALNMSLKWPKVTVLLAIAITASAVYPWQKLGYELMPPL 565

Query: 575 FKGGIQLGVLANRPVDLSVVRSNLESLQ 602
           ++G +         + +      L+   
Sbjct: 566 YEGDLMYMPTTMPGISVEEASELLQQTD 593



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 69/162 (42%), Gaps = 11/162 (6%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           + +A++ +I++       L A+ +L L +   +    L GI  N+ ++  +   IG  V+
Sbjct: 348 AFVAVICFIFLLHA-RSTLVAVISLPLSVLIAIWIMNLMGITANIMSLGGIAIAIGALVD 406

Query: 736 DKVVVYDRMRKNMKLYTTSI-------SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +V+ +   K+++L+T            + +I  +  E  G   ++ +   +S LP+  
Sbjct: 407 AAIVMIENAHKHLQLFTDKQQRQPDSSERQKVILDACREVGGSLFFSLLIITVSFLPIFA 466

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             G     F   A      +  AA  SI +   +++F+   +
Sbjct: 467 LQGQQGRLFEPLAYTKTLAMACAALLSITLIPVLIVFLIRGK 508


>gi|224026488|ref|ZP_03644854.1| hypothetical protein BACCOPRO_03245 [Bacteroides coprophilus DSM
           18228]
 gi|224019724|gb|EEF77722.1| hypothetical protein BACCOPRO_03245 [Bacteroides coprophilus DSM
           18228]
          Length = 1031

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/680 (11%), Positives = 194/680 (28%), Gaps = 49/680 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   +++   ++   G  +A    +        P+ +     +       G       
Sbjct: 10  LQNRLLVLVASILLLVGGTYMAFHTEVDVFPDLNAPTVVVMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPIETAVNGATGVRRVRSSSTTGFSVVWVEFDWDTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L  +  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 AVDDALPDNVGKPTLGPQSSILGELLIVGLTADSTSM--LDLRTMADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +      P R++    T A++       N +  G +          GN+
Sbjct: 174 AQVAVLGGDIKEYQILIHPERMKHYGVTLAEVMDVTRSMNQNTSGGVI------YEYGNE 227

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y+V   +  + I   G               I           +V    IG     +   
Sbjct: 228 YIVRGVLATTDIERMGRA------------VIKNIGGAPVTLSDVADVRIGAQQPKLGLA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P +   +       +   T +    L  + +     + ++    R       S S
Sbjct: 276 SEKGKPAVLITVTKQPNTGTIELTEKLEAALKDLQKNLPADVHISTDIFRQSRFIESSIS 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +    A  V+IVLF+ +   +  L++  ++ L++++ + +L  +G ++   S+ G+
Sbjct: 336 NVQESLYEGAIFVVIVLFLFLANTRTTLISLVTLPLSLVVAILVLHYMGLSINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENR--------KNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R        + + V   +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVWKHLRENRLLPEGERRPVREVVFNASREVRMPILNSTLIIVV 455

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-IDINPL 528
           + V LFF     G  +    I   +S+  S   A+++   +  +++     K  +     
Sbjct: 456 SFVPLFFLSGMEGRMLIPLGIAFIVSLFASTIVALTLTPVLCSYLLGTDPRKKGLPKEAF 515

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG---LNYGIDFKGGIQLGVLA 585
              +L                  + +   + ++ +               +G   + V +
Sbjct: 516 LAVWLKKYYERGLLWALSHKKAVLGVTVGLFAVAVGCFCTLGSSFLPPFNEGSFTINVSS 575

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              + L          +   +S            R +            +E   +     
Sbjct: 576 MPGISLEESDKIGRQAEELLLSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRS 635

Query: 646 VPLSTIQNTEIVGPKISREL 665
                    + +       +
Sbjct: 636 HAEVLADVRQKLSVITGANI 655



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/305 (9%), Positives = 86/305 (28%), Gaps = 13/305 (4%)

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
               R      S              G+    D +   +  +       +++       +
Sbjct: 206 MDVTRSMNQNTSGGVIYEYGNEYIVRGVLATTDIERMGRAVIKNIGGAPVTLSDVADVRI 265

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                       +    V +      +     + E ++  + ++                
Sbjct: 266 GAQQPKLGLASEKGKPAVLITVTKQPNTGTIELTEKLEAALKDLQKNLPADVHISTDIFR 325

Query: 662 SRELIRKGIVGVI-----ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   I  V       +   +++           L ++ TL L +   +      G+
Sbjct: 326 QSRFIESSISNVQESLYEGAIFVVIVLFLFLANTRTTLISLVTLPLSLVVAILVLHYMGL 385

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRM----RKNMKL-YTTSISFRDLIDKSINETLGR 771
             N  ++  +   IG  V+D +V  + +    R+N  L        R+++  +  E    
Sbjct: 386 SINTMSLGGMAIAIGSLVDDAIVDVENVWKHLRENRLLPEGERRPVREVVFNASREVRMP 445

Query: 772 SVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++   +S +P+    G    ++    I     +  +   ++ +   +  ++     
Sbjct: 446 ILNSTLIIVVSFVPLFFLSGMEGRMLIPLGIAFIVSLFASTIVALTLTPVLCSYLLGTDP 505

Query: 829 KNARI 833
           +   +
Sbjct: 506 RKKGL 510



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 92/239 (38%), Gaps = 10/239 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  +                 + +         ++ V ++ ++   +I          
Sbjct: 794  SYVADVVSAMGPNTINRENVKRKIVISANTSGRDLRSVVNDIQERVNEKIQLPEGYHIEY 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +  +   R  ++  ++S + + + ++++F    A   +  L L +    G FAL  
Sbjct: 854  GGQFESEQAASRTLLLTSLMSIVVIFLLLYMQFH-NAAQSGVILLNLPLALIGGVFALML 912

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
               E ++ A+   ++L G +  + +++      N       +  R+ I     + L   +
Sbjct: 913  TTGEMSIPAIIGFISLFGIATRNGMLLISHY--NTLREEQGMGLRESIVHGSLDRLNPIL 970

Query: 774  YTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             T++++ ++++P+A+ GG     +    A  +  G++ +   + FI  PI+  + + R 
Sbjct: 971  MTALSSALALIPLALRGGLPGNEIQSPMAKVILGGLLTSTFLNAFII-PIVYELMNRRK 1028


>gi|260174312|ref|ZP_05760724.1| cation efflux system protein [Bacteroides sp. D2]
 gi|315922579|ref|ZP_07918819.1| cation efflux system protein [Bacteroides sp. D2]
 gi|313696454|gb|EFS33289.1| cation efflux system protein [Bacteroides sp. D2]
          Length = 1035

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 86/613 (14%), Positives = 185/613 (30%), Gaps = 46/613 (7%)

Query: 5   PWLVI-LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE- 62
            W+++ L+ M+C  G          Q  ++ +P                 S +V +V   
Sbjct: 13  RWIMLCLFVMMCVFGYYS-----WTQLSIEAYPDIADVT-----------SQVVTQVPGL 56

Query: 63  -DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   + +  +   + L    +         + IT+ F D         +V   L  
Sbjct: 57  AAEEVEQQITIPLERAINGLPGMHVMRSKSTFGLSMITIVFKDGTEDYWSRQRVQERLNE 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L       L   T+           +    +    +    +    I +I       
Sbjct: 117 V--ELPYGAAPGLDPLTSPVGEVYRYIIESDQHSLRELTDLQNWV---VIPRIKEVSGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  I  Q   E DP +L Q   + +++       N S  G +     L        
Sbjct: 172 DVTNFGGITTQFQVEIDPYKLEQYHLSLSQVIEAIENNNASVGGSILNRGDLGYVVRGIG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+E+  ++  I +   +           V +  +++G+ ++  + R  +        D  
Sbjct: 232 LIENLDDLGHIVVTTTSG----------VPVFLNDIGSLKYGNLERKGVLGYTDRTRDYS 281

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                ++        +++          +   +L                      +   
Sbjct: 282 ESLEGIVLLLKHENPSKVLDGIHAAVDDLNHEIL----PEGVRIHTFLDRTSLVDTTLDT 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T  +   LV+IVL + +   +  L+   +I  ++++   L+ L      L S+  I 
Sbjct: 338 VSHTLLMGMALVVIVLILFLGNWRGALLVSITIPASLLIAFILMHLTDIPANLLSLGAID 397

Query: 422 LGIGLAVDSNILVNERI---REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            GI   VD  I++ E I   RE+  +      S+          I  S I  + A + LF
Sbjct: 398 FGII--VDGAIVMLETILKKREDYPEQYIEEKSIAQRAKEVGRPILFSTIVIITAYLPLF 455

Query: 479 FF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            F           A TM  +++ ++  A+ ++  +   I R  +    +           
Sbjct: 456 AFERVERKLFTPMAFTMSYAMIGALLVALLLIPGLAYAIYRKPRKVYKNKWLEKLKEKYT 515

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
             I     +     +   ++     +              +G I L V     + +   R
Sbjct: 516 GAIEKLIQKPVKTILFSCLILIAGIVLSGVVGKDFLPELDEGSIWLQVNLPPGISVEKSR 575

Query: 596 SNLESLQIGDISF 608
              ++L+   + +
Sbjct: 576 EMSDTLRSRTMKY 588



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 33/225 (14%), Positives = 80/225 (35%), Gaps = 9/225 (4%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E N                  L+  +  I   V     + T   G     +      + V
Sbjct: 806  EMNRRHLTVKLNLRGRDLASFLKEAQNVIDAKVNYDKSKYTVKWGGAFENQNRAYTRLSV 865

Query: 674  IISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
            I+    M ++I +   +  F    +   I+ +    G  AL   G+  N+++    + + 
Sbjct: 866  ILPLTLMCMFILLYATFGKFRQAGLVLSIVPLALFGGMLALNVRGMTLNVSSAVGFIAMF 925

Query: 731  GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
            G S+ + +++  ++  N++     +  R  + +   +     + TS+   + + P ++  
Sbjct: 926  GLSIQNGIIMVSQIN-NLRKG--GMELRKSVIEGARQRFRPILMTSVTTVLGLFPASLAT 982

Query: 789  -WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              G  V    A  + +G++ +A  S+F+       I +      +
Sbjct: 983  GIGSDVQRPLATVIVYGLMFSALISMFVLPVFYYLIENNVLNKKK 1027



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/208 (14%), Positives = 75/208 (36%), Gaps = 8/208 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                 V ++  + + E V + T  +   +       +    ++G+ +    +++ I   
Sbjct: 301 DGIHAAVDDLNHEILPEGVRIHTFLDRTSLVDTTLDTVSHTLLMGMAL---VVIVLILFL 357

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  AL    T+   +        L  I  NL ++ A+    G  V+  +V+ + + K 
Sbjct: 358 GNWRGALLVSITIPASLLIAFILMHLTDIPANLLSLGAI--DFGIIVDGAIVMLETILKK 415

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFG 804
            + Y         I +   E     +++++    + LP+  +       F   A  M++ 
Sbjct: 416 REDYPEQYIEEKSIAQRAKEVGRPILFSTIVIITAYLPLFAFERVERKLFTPMAFTMSYA 475

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++ A   ++ +   +   IY    K  +
Sbjct: 476 MIGALLVALLLIPGLAYAIYRKPRKVYK 503


>gi|126734712|ref|ZP_01750458.1| Cation/multidrug efflux pump [Roseobacter sp. CCS2]
 gi|126715267|gb|EBA12132.1| Cation/multidrug efflux pump [Roseobacter sp. CCS2]
          Length = 1039

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 71/554 (12%), Positives = 150/554 (27%), Gaps = 41/554 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N   V+   +I  + +       +P+      P  +P   +S  +D   G          
Sbjct: 10  NRSKVVQLVLIFLLAVGSLSYIAIPKESNPEIP--IPIVFVSASVD---GIS-------P 57

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           +     L    +   + L        +  + +  + L F      +   DKV      V 
Sbjct: 58  EDSEDVLVRPLETEFASLTGLKSMTATASEGRGAVQLDFEPGFDADEALDKVREGADRVE 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           ++L  D    ++         I+    +           + +      D I      ++ 
Sbjct: 118 NELPSDAT-VIVTEINTALFPILTVILSGPVPERTLNGLAED----LQDDIESLGGVLEV 172

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             + +    +    DP+       +  ++       N             R       L+
Sbjct: 173 DVAGKRTELMEVLIDPTVFETYNISFNELISSITNNNQLIAAGAIESEAGRLVLKVPGLI 232

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           E+  ++                    +++     G           I +          +
Sbjct: 233 ENLEDV--------------------MELPVLVRGQTVVTFADVATIRRTFEDPNGFARI 272

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                       +   +   T +    L    + G                     S  +
Sbjct: 273 DGQPALALEIKKRVGANIIETADEVRALIEAQQTGWPDSVQVRYTLDESETVKTMLSDLE 332

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   LV+IV+   +      L+   +I    +  +A L  +G T+ +  +  ++L 
Sbjct: 333 ANVIAAIILVMIVVVYALGLRSS-LLVGLAIPGAFLTGVAGLYFMGFTMNIVVLFSLILV 391

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG-- 481
           +G+ VD  I+  E       + Q    +      R    I  S  T L     L F+   
Sbjct: 392 VGMLVDGAIVTTELADRYLHEGQPPKEAYARAAKRMAWPIIASTATTLCVFFPLLFWSGV 451

Query: 482 -GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G  ++   IT+  ++  S+F A+  +  M   I + +   +     L            
Sbjct: 452 VGEFMKFLPITVIFTLAASLFMALVFIPVMGGLIGKRQAQSAKAKAQLYAAEHGDPRKMT 511

Query: 541 QFMRARFWGVGISI 554
            FM      +  SI
Sbjct: 512 GFMGGYVRVLEWSI 525



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 87/252 (34%), Gaps = 20/252 (7%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             SN  S      S      ++  ++ +       V        ++  I ++   + ++  
Sbjct: 780  ISNFVSFNPAPRSGVITRVDQERVITISADVASGVLANDQTVALQDAIEKMDLPAGVRVE 839

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                 +   E +   I   + +   M + +  +F  ++ A   ++ ++  I   L    +
Sbjct: 840  FGGEAEDQEESMTFLIGAFLSAIGLMFVILLTQFNSFWQAFIVMSAIVFSIAGVLLGLMI 899

Query: 714  FGIEFNL-TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G  F +      V+ L G  VN+ +V+ D      +L    +S  +   ++    L   
Sbjct: 900  TGRPFGVVMGGIGVIALAGIVVNNNIVLIDTFN---QLKAQGLSSLEAALRTGARRLRPV 956

Query: 773  VYTSMAAFISVLPMAV------------WGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
            V TS+   + ++PM +            +G          +  +A G++ A   ++ +  
Sbjct: 957  VLTSVTTALGLMPMVIGLNISFFTREIVYGAPSTQWWTELSSAIAGGLIFATVLTLLVTP 1016

Query: 818  PILLFIYDWRAK 829
             +L+       +
Sbjct: 1017 AMLMLSERRAKR 1028



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/252 (11%), Positives = 80/252 (31%), Gaps = 10/252 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V     V  + V +   + +  +   +        L   +    + +     +  + +  
Sbjct: 245 VRGQTVVTFADVATIRRTFEDPNGFARIDGQPALALEIKKRVGANIIETADEVRALIEAQ 304

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
               P S      +   +  + ++      VI + I ++I +        +L     +  
Sbjct: 305 QTGWPDSVQVRYTLDESETVKTMLSDLEANVIAAIILVMIVVVYALGLRSSLLVGLAIPG 364

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV---VYDRMRKNMKLYTTSISFRD 759
                +      G   N+  + +++ ++G  V+  +V   + DR              ++
Sbjct: 365 AFLTGVAGLYFMGFTMNIVVLFSLILVVGMLVDGAIVTTELADRYLHE------GQPPKE 418

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              ++        +  S A  + V    ++   V+G F   +   ++   ++S+F+A   
Sbjct: 419 AYARAAKRMAWPII-ASTATTLCVFFPLLFWSGVVGEFMKFLPITVIFTLAASLFMALVF 477

Query: 820 LLFIYDWRAKNA 831
           +  +     K  
Sbjct: 478 IPVMGGLIGKRQ 489


>gi|254252353|ref|ZP_04945671.1| Cation/multidrug efflux pump [Burkholderia dolosa AUO158]
 gi|124894962|gb|EAY68842.1| Cation/multidrug efflux pump [Burkholderia dolosa AUO158]
          Length = 865

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 79/634 (12%), Positives = 164/634 (25%), Gaps = 44/634 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G     P  L ++  D FPS                  +V   
Sbjct: 8   LRRPYTFVVLALLIFIAG-----PLALLRTPTDIFPSIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMAKRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    +   +     +           Q+   
Sbjct: 112 NAASILRILPPGTLPPNIITYNASTVPILQLGLSSKTLAEQ--QLYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + D   L+        +       N    G    +       
Sbjct: 170 QGAAVPLPFGGKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGTAKIGTREYDV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     D+    +G    +     ++    A  
Sbjct: 230 QMNGSTQTVAAL--------------------NDLPVKTIGGNVVYVRDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    I+    +   + AG          +        
Sbjct: 270 TNIVRADGRRAALLTVEKTGSASTLTIIDQVKAMLPKIEAGLPKALHIAALDDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   SI L V+ +L  LS LG T+ + ++
Sbjct: 330 AVHGVVREALIAACLTALMILLFLGSWRATLIIAVSIPLAVLTSLLALSALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     +   +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLERGAPLEDAILTGAGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G         A  +  +++ S F + ++V  + + ++R K          +R    
Sbjct: 450 FLLTGVARYLFVPLAEAVIFAMVASYFFSRTLVPTLAMALMRAKGQGRPPRGAFARIARF 509

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                 +F   R     +                L            G      VD   +
Sbjct: 510 QAAFEHRFEAVRLRYRALLSAAIARRRRFAAAFLLACVASAGLFAFAGEDFFPSVDTGEI 569

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
           R +L +     I       ++         P + 
Sbjct: 570 RLHLRAPTGTRIEETARLTDEVEAKIRTVIPANE 603



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 78/239 (32%), Gaps = 10/239 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++  VR                  +      L  +   S +   +++ VK  + +I    
Sbjct: 252 NVVYVRDVAHVRDGYAPQTNIVRADGRRAALLTVEKTGSASTLTIIDQVKAMLPKIEAGL 311

Query: 650 TIQNTEIVGPKISRELIRKGIV-----GVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                           ++  +       +I + +  L+ +     W   L    ++ L +
Sbjct: 312 PKALHIAALDD-QSVFVKAAVHGVVREALIAACLTALMILLFLGSWRATLIIAVSIPLAV 370

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             +L   +  G   N+  +  +   +G  V+D  V  + +              D I   
Sbjct: 371 LTSLLALSALGQTINIMTLGGLALAVGILVDDATVAIENI---THHLERGAPLEDAILTG 427

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             E    +  ++++  I  +PM +  G     F +P+A  ++ A  +S F +  ++  +
Sbjct: 428 AGEIAVPTFVSTLSICIVFVPMFLLTGVARYLF-VPLAEAVIFAMVASYFFSRTLVPTL 485


>gi|103487920|ref|YP_617481.1| heavy metal efflux pump CzcA [Sphingopyxis alaskensis RB2256]
 gi|98977997|gb|ABF54148.1| Heavy metal efflux pump CzcA [Sphingopyxis alaskensis RB2256]
          Length = 1044

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/663 (10%), Positives = 167/663 (25%), Gaps = 48/663 (7%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
            +V    ++  +G+          + +D  P       I                     
Sbjct: 15  LVVASALILTLLGIAAV-----RTTPVDALPDLSDVQVI---------VRTSYAGQAPRI 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +          +    +         + + + F D         +V  +L  V S+
Sbjct: 61  VEDQVTYPITTTMLSVPGARVVRGYSFVGDSFVYVLFDDGTDPYWARSRVLEYLSQVQSR 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
           L    + +L    T                     E           ++       +   
Sbjct: 121 LPDGARASLGPDATGVGWIYEY-ALVDKSGRHDLAELRSLQDWFLRFELKSVPGVAEVAS 179

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
              ++ Q     DP +L     T   ++      N    G    +            ++ 
Sbjct: 180 IGGMVRQYQIIVDPQKLAAFGVTATDVADALKRANQESGGGSLELAEAEYIVRAGGYLKS 239

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
             +                     V I     G              P        +   
Sbjct: 240 LDDFR------------------SVPIRTAGGGIPVTVGDVATVQIGPDTRRGIAELNGE 281

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
             +   +   +   +    I+      A L+    P    +      G    +       
Sbjct: 282 GEVAGGVIVMREGKNAREVIDGVRAKLAELKRSLPPGVEIVTTYDRSGLIDRAVDNLTSK 341

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
                 +V +V  + + + +  LVA  ++ L +++   ++ L G    + S+ GI + +G
Sbjct: 342 LVEEFIIVGLVCALFLWHARSALVAILTLPLGILIAFIVMRLQGLNANILSLGGIAIAVG 401

Query: 426 LAVDSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
             VD+ +++ E   +                   +  +    +     +F S +    + 
Sbjct: 402 AMVDAAVVMIENAHKHLEHWERDHPGEELKGAERWRVITDAAAEVGPALFLSLLIITFSF 461

Query: 475 VVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + +F   G   R     A T   ++  +   +I+++  +M ++IR K             
Sbjct: 462 LPIFTLEGQEGRLFAPLAFTKTYAMAAAAILSITLIPVLMGWLIRGKIPAEQANPVNRWL 521

Query: 532 FLIPDCIA-IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                        R +   +   ++F+     +    G       +G +     A   + 
Sbjct: 522 TRAYRPALDWVLERPKKALLIAGLVFATSLWPMTQIGGEFMPQMHEGDLLYMPSALPGIS 581

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
            +   S L+       +    +       R       +  +     +  K   +  P  T
Sbjct: 582 AARASSLLQQTDRLIKTVPEVESVFGKAGRADSATDPAPLEMFETTIRFKPKDQWRPGMT 641

Query: 651 IQN 653
            + 
Sbjct: 642 EEK 644



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 82/250 (32%), Gaps = 7/250 (2%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   + + + L  V S   S     +  +N        V  + +    +       + +
Sbjct: 787  PILTPSRQQITLGTVASVKVSDGPPMLRSENGRPVTWIYVDSRGRDLQGLVHDIQRAIAR 846

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                      +         + +  +  K +V V ++ I +L+Y+  R +W  AL  + T
Sbjct: 847  DVELPPGVSISYTGQFEFLVRATERM--KVVVPVTLAIIFILLYLTFR-RWDEALLIMAT 903

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            L   +T  L    L G   ++ +    + L G +    VV+   ++  +           
Sbjct: 904  LPFALTGGLWLLYLLGYNQSVASAVGFIALAGVAAEFGVVMLIYLKHALADRGDG-DILA 962

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             + +     +     T       + P+ V    G  V+   A PM  G++ A   S+ I 
Sbjct: 963  AVREGALLRVRPKAMTVAVILAGLFPILVGTGTGSEVMSRIAAPMIGGMLTAPLLSMLII 1022

Query: 817  APILLFIYDW 826
                L +   
Sbjct: 1023 PAAYLLMRRR 1032


>gi|110637916|ref|YP_678123.1| cation efflux protein [Cytophaga hutchinsonii ATCC 33406]
 gi|110280597|gb|ABG58783.1| cation efflux protein [Cytophaga hutchinsonii ATCC 33406]
          Length = 1455

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/683 (10%), Positives = 181/683 (26%), Gaps = 56/683 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   + +    +   G   A      +  +D  P                   + +   
Sbjct: 11  KNKLIIGVFTLALIIWGCWSA-----TKLPIDAVPDITNN-------------QVQVITS 52

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++       +   + +          R   + +T+ F D+        +V+ 
Sbjct: 53  SPSLAAQEVERLISFPVEVNMANIPGLIEVRSISRFGLSVVTVVFDDATDIYWARQQVSE 112

Query: 118 FLQGVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            L+    ++           + +   +    V+      +     +E           Q+
Sbjct: 113 RLKSATDQIPKGVGVPEMGPVSSGLGEIYQYVIHPKKGYENKYTPMELRTIQDWIVRRQL 172

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             ++           + Q     +P +LR +  T  ++       N +  G     +   
Sbjct: 173 LGTKGVADVSSFGGFVKQYEISINPDKLRSMNITIGEVFSALETNNQNTGGAYIDKQPNA 232

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                + L     +I                    V +     G                
Sbjct: 233 WFIRTEGLATSIEDI------------------QKVVVKNTNNGTPILIRDVAVVQFGHA 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                        +  AI       + N  I         +R                  
Sbjct: 275 VRYGAMTRNNDGEVVGAIVMMLKGANSNEVIGNVKERIEQIRKTLPEGVEIEAFLDRTNL 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +           A +V+ VL + +   + GLV    I L ++  L++++L G +  L
Sbjct: 335 VNRAIHTVSKNLIEGALIVIFVLVLFLGNLRAGLVVASVIPLAMLFALSMMNLFGVSGNL 394

Query: 415 PSIAGI--VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN----- 467
            S+  I   L +  AV         I  +   ++     LD     + S I +S      
Sbjct: 395 MSLGAIDFGLIVDGAVIIVEATLHHIVSKRYTHKLSQDELDNEVFESASKIRNSAAFGEI 454

Query: 468 --ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSI 523
             +   +  + L    G   +  A T+  +IL +   +++ V  +   ++       K+I
Sbjct: 455 IILIVYLPILALVGIEGKMFKPMAQTVAFAILGAFILSLTYVPMISALLLSKNPSHKKNI 514

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLG 582
               +  F+ I        ++ +   V  S+L    S+ +    G  +     +G   + 
Sbjct: 515 SDKMMDFFYKIYSPAIHFAIKRKIAVVLTSLLLFAVSLFIFMNMGGEFIPTLDEGDFAVE 574

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
                   +              ++ Q  +  K  + ++      +         +   +
Sbjct: 575 TRVLTGSSMMETVDASLKAGEI-LTKQFPNEVKEVIGKIGAGEIPTDPMPIEACDLMVIL 633

Query: 643 TEIVPLSTIQNTEIVGPKISREL 665
            +    ++    + +  K+   L
Sbjct: 634 KDKDEWTSATTRDELANKMQEAL 656



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/213 (17%), Positives = 75/213 (35%), Gaps = 6/213 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  +       Q    +    + + +       ++ V E+  K   ++   S    T 
Sbjct: 803  SQIAEISFKVGPNQIQRDDTKRRITVAFNVRGRDVESIVKEIQDKVQAQLKLPSGYYLTY 862

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                K   E   +  V V I+   + I ++  F  +  ++   T + L     +    L 
Sbjct: 863  GGQFKNLVEAKARLSVAVPIAMALIFILLYFTFNSFKQSILIFTAIPLSAIGGVFALWLR 922

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             + F+++A    + L G +V + +V+      N        +  D+I K     L   + 
Sbjct: 923  DMPFSISAGVGFIALFGVAVLNGIVLLGEF--NSLKKEGLTNLTDIILKGTQTRLRPVLM 980

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
            T+  A +  LPMA+    G  V    A  +  G
Sbjct: 981  TATVASLGFLPMALSHGSGAEVQKPLATVVIGG 1013



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 90/291 (30%), Gaps = 19/291 (6%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                   F          +   ++ V         ++R          + +       +
Sbjct: 226 IDKQPNAWFIRTEGLATSIEDIQKVVVKNTNNGTPILIRDVAVVQFGHAVRYGAMTRNND 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-- 674
             V          A +  +    K+  E +  +  +  EI        L+ + I  V   
Sbjct: 286 GEVVGAIVMMLKGANSNEVIGNVKERIEQIRKTLPEGVEIEAFLDRTNLVNRAIHTVSKN 345

Query: 675 ---ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
               + I + + +         L   + + L +   L    LFG+  NL ++ A+    G
Sbjct: 346 LIEGALIVIFVLVLFLGNLRAGLVVASVIPLAMLFALSMMNLFGVSGNLMSLGAI--DFG 403

Query: 732 YSVNDKVVVYDRMRKNM--KLYTTSISFRDLIDKSINE--------TLGRSVYTSMAAFI 781
             V+  V++ +    ++  K YT  +S  +L ++              G  +   +  ++
Sbjct: 404 LIVDGAVIIVEATLHHIVSKRYTHKLSQDELDNEVFESASKIRNSAAFGEIII--LIVYL 461

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +L +    G +    A  +AF I+ A   S+     I   +      + +
Sbjct: 462 PILALVGIEGKMFKPMAQTVAFAILGAFILSLTYVPMISALLLSKNPSHKK 512


>gi|257061485|ref|YP_003139373.1| acriflavin resistance protein [Cyanothece sp. PCC 8802]
 gi|256591651|gb|ACV02538.1| acriflavin resistance protein [Cyanothece sp. PCC 8802]
          Length = 1061

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/512 (12%), Positives = 140/512 (27%), Gaps = 34/512 (6%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L++++   G+L      L        P         LG                  V  
Sbjct: 16  VLFTLLAIFGILSLFNLPLELQPGGDRPEITITTP-YLG-------------ASPTEVED 61

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    +E    +        +     + I + F  +         V   LQ V +    
Sbjct: 62  LVTRPIEERLEEVPGIQEITSTSSAGTSSINVEFTWNTDINRGLLDVLNKLQQVEALPPE 121

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
             + N+ V +      + +     +            +    + ++   +   Q L S  
Sbjct: 122 ADESNVEVVSAGSSPMMWVILIPKEGFTPDESRYRDLVDDVIVPRLRQVQGVGQFLISGG 181

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
              ++    DP  L     T   +       N   +G    +            + D  +
Sbjct: 182 TDREVEVIVDPKALADRNLTIGDVVNTLRSNNRDIRGGPLILGRREYRVRTVSRINDVKQ 241

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           + G  L    +            +                     +  V       +  I
Sbjct: 242 LEGFVLRRDESGTVYLGDVAEARMGRAIQDRALVRNNEPAVGIGIMRQVGGNVPEISAGI 301

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                              A                  +          S +  +G   +
Sbjct: 302 R-----------------EALADLETRFDRQGEGITFDITYDENDYINDSIAFVQGNLIV 344

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            A L  ++L + +   +   V   +I   +I    +  L G TL + S+AG+   +G+ V
Sbjct: 345 GAILAALILLLFLGSLRTVGVIAITIPTTLITVFIVFYLFGRTLNVISLAGLAFAVGMVV 404

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAV 485
           D+ I+V E I  + ++ ++   +   G       +  S +T +     +       G   
Sbjct: 405 DNAIVVLENIFTQMQEGKTPMKAAIDGTQEVGGAMLASTLTTVAVFAPIILVTGEAGQVF 464

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
               I + +S+L S+F A+++V  +    +  
Sbjct: 465 FDIGIALSVSVLFSLFAALTLVPMLAGLFLSR 496



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 100/255 (39%), Gaps = 16/255 (6%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + V LS V   +E+     I+  + +      V +  +        +  + + + +   +
Sbjct: 792  QRVQLSDVAEVIETTGPDAINHVDLERSITLTVSVATEAPLGALVEQTEQQILEPLRNNI 851

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            P             ++  L++ G   V+   I  L+ + +     + L  + T+ +    
Sbjct: 852  PPGVRLELGGSADVLTETLLQLGATFVLSLVITYLLLVALYRSLIYPLLIMATVPM--GM 909

Query: 707  TLGFFALF------GIEFNLTAVAAVLTLI--GYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            T    +L       G+  +L  +  +  +I  G  VN+ +++ DR    ++L    + + 
Sbjct: 910  TGALLSLVLANTIPGVVVSLDMITGLGFVILTGVVVNNAILLVDRA---LQLQEQGMDYD 966

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
              +  ++++ L     ++  + + +LP+A+    G  +     I +  G++++   +  +
Sbjct: 967  ASLYYAVSDRLRPIFMSAGTSVLGMLPLAIIPGKGAELYQGLGIVLTGGLLLSTFLTPTV 1026

Query: 816  AAPILLFIYDWRAKN 830
               ++  + D++ K 
Sbjct: 1027 IPALMGLLQDFQPKK 1041



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 7/141 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              + AI T+   +      F LFG   N+ ++A +   +G  V++ +VV + +      
Sbjct: 362 TVGVIAI-TIPTTLITVFIVFYLFGRTLNVISLAGLAFAVGMVVDNAIVVLENI---FTQ 417

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
                +          E  G  + +++       P+ +  G    V     I ++  ++ 
Sbjct: 418 MQEGKTPMKAAIDGTQEVGGAMLASTLTTVAVFAPIILVTGEAGQVFFDIGIALSVSVLF 477

Query: 808 AASSSIFIAAPILLFIYDWRA 828
           +  +++ +   +         
Sbjct: 478 SLFAALTLVPMLAGLFLSRTE 498


>gi|58583813|ref|YP_202829.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58428407|gb|AAW77444.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1069

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 145/544 (26%), Gaps = 38/544 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 32  KRPIGTSLLAIGLFVIGLMCYLRLDVASLPNIQIPIIF--------------VHATQPGA 77

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + L F  SR  ++ A  +   +  
Sbjct: 78  DASTMAFTVTAPLERHLGQLPGVDRMRSSSSESSSVVVLVFQSSRNIDSAAQDIQTAINA 137

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       E  ++      +     A E           ++       
Sbjct: 138 SQSDLPSGLGTPMYSKANPNEDPVIAIALTSE--TQSADELYNVADSLLAQRLRQITGIS 195

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  TT  +       N +             +     
Sbjct: 196 SVDIAGASTPAVRVDVDLRALNALGLTTDNLRNAVRAANVTSPTGFLSDGNTTMAIIAND 255

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 256 SVSKAAD-------------------FAQLAIATQSNGRIVRLGDVATVYDGQQDAYQAA 296

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR+   P                S   
Sbjct: 297 WFNGKPAVVMYAFTRAGANIVETVDQVKAHIPELRSYLQPGTTLTPYFDRTPTIRASLHE 356

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG +L   S+  +V
Sbjct: 357 VQATLMISLAMVILTMALFLRRLAPTLIAAITVPLSLAGSALVMYVLGFSLNNLSLLALV 416

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E +     +  S   +   G      TI     + +   + + F  
Sbjct: 417 IAIGFVVDDAIVVIENVMRHLDEGMSRMEAALAGAREIGFTIVSITASLVAVFIPMLFAS 476

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + + +
Sbjct: 477 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSAHAEPEKPGRFGAWLDRMHERM 536

Query: 539 AIQF 542
              +
Sbjct: 537 LRVY 540



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 361 LMISLAMVILTMALFLRRLAPTLIAAITVPLSLAGSALVMYVLGFSLNNLSLLALVIAIG 420

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           + V+D +VV + +   M+     +S  +       E +G ++ +  A+ ++V    ++  
Sbjct: 421 FVVDDAIVVIENV---MRHLDEGMSRMEAALAGARE-IGFTIVSITASLVAVFIPMLFAS 476

Query: 792 SVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
            +I      F + +   IVV+   S+ +   +
Sbjct: 477 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPAL 508


>gi|148266238|ref|YP_001232944.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
 gi|146399738|gb|ABQ28371.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
          Length = 1071

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 79/675 (11%), Positives = 200/675 (29%), Gaps = 32/675 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N+    ++ +    +G+   L         +  P  +        +D     +L L    
Sbjct: 16  NSKLTPLIVAASLLLGVYAVLVT-----PREEEPQIVVPM-----ID----IYLPLPGST 61

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    +K       + R     +T+ F   +  E    K+   +   
Sbjct: 62  PKEVEERIVKPFEKKMWEIKGVEYIYSASRPGMGIVTVRFLVGQNMEESLVKLYNKVMSN 121

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L     + L+V  +  ++ I+      +    +A+ +   +  +  D++  S+   +
Sbjct: 122 RGILPPGSGEPLVVPKSIDDVPILTLTLWSEHYDHYALRR---VASELCDELKKSDDVAE 178

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+    D  ++     +  ++       N +     F              
Sbjct: 179 SEIKGGLTRQVKVRLDAGKMAAYSLSPLQIMGALQKGNVALASGAFASSNREYLVQTGTF 238

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++D   +  I +              +V    +E     FF +      K +        
Sbjct: 239 LDDAEAVKRIVVAVHDGRPVYLEEVAIVQDGPEEAKDYVFFGMGPAAAKKGIKGNNAASF 298

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      + +   +  +  E     A  L+   +P  + +   RN G      +  
Sbjct: 299 ----PAVTISVAKRKGANATWVAEDMLKRAEFLKGKLIPSDVQVTVTRNYGETAKEKNNE 354

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                 +A + + +L  + +  + G VA  +I + + LT+ + + +G TL   ++  ++ 
Sbjct: 355 LLFHMFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMLIFNQIGYTLNRITLFALIF 414

Query: 423 GIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            IG+ VD  I+V E I         +   +         +    +    + + + + F G
Sbjct: 415 SIGILVDDAIVVVENIHRYFTTTRLAPLEAAIRAVDEIGNPTVLATFAVIASILPMGFVG 474

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK------SIDINPLSRFF 532
              G  +R   +   L+++ S+  A  +        ++ +                    
Sbjct: 475 GLMGPYMRPIPVGASLAMIFSLLIAFIVTPYFAYRFMKGESHFGSEREAEESRLTAFYRK 534

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNY-GIDFKGGIQLGVLANRPVDL 591
           ++   +  + +R  F    +++L   CS+       +     D K  +Q+ V A     L
Sbjct: 535 IMGALLHRKPIRYGFLAGVVALLLISCSLIYFKLVTVKMLPFDNKNELQVIVDAPDGTTL 594

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                    +             + ++        + + +   L          V     
Sbjct: 595 EETARMTAEMGDALRKVPEVTDFQTYVGVSSPFNFNGLVRHYYLRKGPNVADIQVNFVNK 654

Query: 652 QNTEIVGPKISRELI 666
                    I++ + 
Sbjct: 655 TERSDQSHDIAKRIR 669



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 65/156 (41%), Gaps = 5/156 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++AI++ I I +   W     A   + + +  T+  F   G   N   + A++  IG 
Sbjct: 359 MFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMLIFNQIGYTLNRITLFALIFSIGI 418

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + + +     TT ++  +   ++++E    +V  + A   S+LPM   GG 
Sbjct: 419 LVDDAIVVVENIHRYFT--TTRLAPLEAAIRAVDEIGNPTVLATFAVIASILPMGFVGGL 476

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +   +    +  +  ++ +   +  +          
Sbjct: 477 MGPYMRPIPVGASLAMIFSLLIAFIVTPYFAYRFMK 512



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/241 (12%), Positives = 79/241 (32%), Gaps = 6/241 (2%)

Query: 594  VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
             R NL+S+               + +    +  D +      ++ ++  ++         
Sbjct: 832  YRKNLKSVVYVTGDVAGVVEAPVYAILKMQKEIDKIPLAGGYKIEQRAASQPWSEERPGL 891

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFA 712
                   I+ E+ R   +      I + + +   F+ +   L  +  + L +   L   A
Sbjct: 892  KWDGEWHITYEVFRDLGLAFGAVMIIIYVLVVAWFRDFTTPLVIMAPIPLTLIGILPGHA 951

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L G  F  T++   + L G  V + +++ D     ++     +   + I  +        
Sbjct: 952  LMGAFFTATSMIGFIALAGIIVRNSIILID--FAELRR-REGMPLDEAIIDAGAVRFRPM 1008

Query: 773  VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + T+ A  +    +      +    A+ M  G + + + S      +   +  W+ +   
Sbjct: 1009 LLTAAAVVVGSFVIVF--DPIFQGLALAMMCGEIASTTLSRITIPILYYMVQSWKERRQT 1066

Query: 833  I 833
            +
Sbjct: 1067 V 1067


>gi|326389057|ref|ZP_08210639.1| acriflavin resistance protein [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206657|gb|EGD57492.1| acriflavin resistance protein [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 1058

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 78/549 (14%), Positives = 168/549 (30%), Gaps = 38/549 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      +++  +I   G++ A+     ++ +D FP       I++     G       +
Sbjct: 9   LHRPLTFIVMAILIAIFGVISAV-----RAPIDMFPEIRIP-VIAVAWGYSG-------L 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  D  +  +  Y   L + +                + + F           +VT   Q
Sbjct: 56  NPQDMTDRIVTPYERALTTTVNNIEHIESQSMVGIGIVKIYFQPGTNIATANAQVTAISQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +L       L++      + I+    +   +     +       Q   Q+      
Sbjct: 116 TLLRQLPPGTTPPLILNYNASTVPILQLALSGAGMSEQ--QLFDMGQNQIRPQLVTIPGL 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S   + Q+  + DPS L+    +   +S      N         +   + S    
Sbjct: 174 AMPFPSGGKMRQVQVDLDPSALQSKGLSAQDVSDAIAAQNQINPAGFVKIGPTQYSVRLN 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                   +                     D+    +           ++        + 
Sbjct: 234 NAPTSIEAL--------------------NDLPVKVVNGATITMRDVAHVRDGAPPQTNV 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             + A              S    I+        +  G       +V          + S
Sbjct: 274 VHVNARRSVLLTVLKNGATSTLSIIDGVKTRLPKVVVGLPDSLKVLVVGDQSVFVRAAVS 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I AGL  +++ + +   +  L+   SI L V+  +A L + G TL + ++ G+
Sbjct: 334 GVVREGLIAAGLTSLMILLFLGSVRSTLIIVTSIPLAVLAAIATLYVFGETLNVMTLGGL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L +GL VD   +  E I     + + V  S+  G ++     F S +   I  V +FF 
Sbjct: 394 ALAVGLLVDEATVTIENINWHLEQGKGVIESITDGAAQIVVPAFVSMLCICIVFVPMFFL 453

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G      A+ +  S++ S   + ++V  M +++++  +  ++     + F  I   
Sbjct: 454 PGVAGYLFVPMALAVVFSMMASFILSRTLVPTMAMYLLKPHEPHAVHTGISAFFVGIQRG 513

Query: 538 IAIQFMRAR 546
               F R R
Sbjct: 514 FEGHFERLR 522



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 7/161 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +G+I +   + + I + F  W   L  I+ L   +   +    + G   ++ A+   +  
Sbjct: 887  LGIIGAIALIYLLIVVNFQSWLDPLVIISALPAALAGIIWMLFVSGTTLSVPALTGAIMC 946

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + ++V    R+  +L  T  +    I+  I       + T++A  I ++PMA+ 
Sbjct: 947  MGIATANSILVISFARE--RLVATGDATMAAIEAGIVR-FRPVLMTALAMVIGMVPMALG 1003

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               GG         +  G++ A  +++     +    +  R
Sbjct: 1004 LGEGGEQNAPLGRAVIGGLLFATVATLMFVPVVFSIAHRRR 1044



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 68/168 (40%), Gaps = 7/168 (4%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             ++R+G++   ++++ +L+++         L  +T++ L +   +    +FG   N+  
Sbjct: 333 SGVVREGLIAAGLTSLMILLFLG---SVRSTLIIVTSIPLAVLAAIATLYVFGETLNVMT 389

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           +  +   +G  V++  V  + +              + I     + +  +  + +   I 
Sbjct: 390 LGGLALAVGLLVDEATVTIENIN---WHLEQGKGVIESITDGAAQIVVPAFVSMLCICIV 446

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +PM    G     F +PMA  +V +  +S  ++  ++  +  +  K 
Sbjct: 447 FVPMFFLPGVAGYLF-VPMALAVVFSMMASFILSRTLVPTMAMYLLKP 493


>gi|299133040|ref|ZP_07026235.1| heavy metal efflux pump, CzcA family [Afipia sp. 1NLS2]
 gi|298593177|gb|EFI53377.1| heavy metal efflux pump, CzcA family [Afipia sp. 1NLS2]
          Length = 1057

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 79/669 (11%), Positives = 181/669 (27%), Gaps = 40/669 (5%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
           ++L  +     +  A    +    LD  P       I          +          V 
Sbjct: 13  LVLILVGTAFAV-AAGVYAVKTLPLDAIPDLSDVQVI---------VYTDYPGQAPQVVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +          + +  +         + + + F D         +V  +L     +L 
Sbjct: 63  DQVTYPLTTAMLTVPRSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLNAAAKRLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 L    T        +    D  ++        +IR        +E   +     
Sbjct: 123 AGVTPGLGPDATGVGWVYQYAVIAKDMTLAELRSLQDWVIRF---AASKAEGVSEVASVG 179

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + Q     DP RLR    + A +       N    G    +         +  ++   
Sbjct: 180 GFVKQYNIVVDPLRLRAQGISLAAVRDAVRNSNQDVGGRTLELSEFEFMVRGRGYIKSPA 239

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           +I                      +   + G     +        P        +     
Sbjct: 240 DIE-------------------NIVLKTDRGVPLRLKDVARVEIGPDERRGITELNGEGE 280

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I   +   +    IE      A +          +           +    + T  
Sbjct: 281 VASGIVLQRFGANALSVIENVKQKLADIAGSLPKGAEIVPVYDRSHLIEAAIETLRHTLT 340

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             + +V  V  + +L+ +  LVA   + + +++    + L+G    + S+ GI + +G  
Sbjct: 341 EESIIVAFVCVVFLLHLRSALVAILMLPVGILIAFTGMKLIGLGSNIMSLGGIAIAVGAM 400

Query: 428 VDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FG 481
           +D+ I++ E   +       ++     L    S     +F S +   ++ + +F      
Sbjct: 401 IDAAIVMIENAHKHLERAPPDKPRVQILIDAASEVGPALFFSLLVITVSFLPIFTLESQE 460

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           G      A T   S+  +   ++++V A+M+  +R K +           FLI     I 
Sbjct: 461 GRLFGPLAFTKTFSMAAAAILSVTLVPALMVIFVRGKIIPE--HKNPINKFLIWTYRPII 518

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
               +     I +     ++ +     L             +     +    V    E L
Sbjct: 519 RAVLKAKTFTIIVALVALAVSIWPARQLGSEFMPNLDEGTLLYMPTTLPGISVTKAAELL 578

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
           Q+ D   ++F    +   +       +      +      +          N + +  ++
Sbjct: 579 QVQDRIIKSFPEVDSVYGKAGRAATATDPAPTEMFETIINLKPKEQWRPGVNIDSLKAEM 638

Query: 662 SRELIRKGI 670
            + L   G+
Sbjct: 639 DKALQFPGV 647



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 15/145 (10%)

Query: 697  ITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLY 751
            I  L L      G       G   ++      + L G +    VV+    D+    +K  
Sbjct: 889  IVMLSLPFALVGGVWLMWWLGFNMSVAVAVGFIALAGVAAETGVVMLIYLDQAMAEVKTA 948

Query: 752  T-------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
                    T     + I     E +   + T +A    ++P+      G  V+   A+PM
Sbjct: 949  RAGQGRSFTRADLYEAIMLGAVERVRPKMMTVVAIMAGLVPILWSTGAGSEVMQRIAVPM 1008

Query: 802  AFGIVVAASSSIFIAAPILLFIYDW 826
              G++ +   ++ +   I   I  W
Sbjct: 1009 IGGMISSTILTLVVIPAIYGLIKGW 1033



 Score = 38.5 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 20/165 (12%), Positives = 56/165 (33%), Gaps = 27/165 (16%)

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           +R  +V ++   + + I I                            L G+  N+ ++  
Sbjct: 357 LRSALVAIL--MLPVGILIAFT----------------------GMKLIGLGSNIMSLGG 392

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  ++  +V+ +   K+++          ++  + +E      ++ +   +S LP
Sbjct: 393 IAIAVGAMIDAAIVMIENAHKHLERAPPDKPRVQILIDAASEVGPALFFSLLVITVSFLP 452

Query: 786 MAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +          F   A    F +  AA  S+ +   +++     +
Sbjct: 453 IFTLESQEGRLFGPLAFTKTFSMAAAAILSVTLVPALMVIFVRGK 497


>gi|169826928|ref|YP_001697086.1| swarming motility protein [Lysinibacillus sphaericus C3-41]
 gi|168991416|gb|ACA38956.1| Swarming motility protein [Lysinibacillus sphaericus C3-41]
          Length = 1031

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 71/635 (11%), Positives = 184/635 (28%), Gaps = 41/635 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  +I   G+         +  ++  P       I +G         V   
Sbjct: 11  LKNKLAVWLLTIIITVSGIYSG-----TRMKMESIPDISIPYLIVMG---------VYPG 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   L +  ++    L+       +      ++ + +      +    ++   L 
Sbjct: 57  ATPEQVMNELSIPFEKSIESLEDVKAVYSTSSSNVAQVQVEYDYGIDMDEKKRQLEAALD 116

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L    ++  ++  +   + +V    +  +     ++ +  +    + +I   +  
Sbjct: 117 NLK--LPEGAQEPTIMAISMNMMPVVALSVSSSE--EDIVDLTSTVEDVLLPKIEKIDGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                + + + Q+  + D  ++  L  T   +       + S    ++       +    
Sbjct: 173 ASATITGQHIEQVSFKYDEEKMAALGLTEETVKQMIQASDMSLSLGLYQFTVGEQAVSVD 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+   E+  + +    +  +P     + DI+  E+  +                    
Sbjct: 233 GKVKSVDELKDLLIPVTPSATNPSPFVRLGDIAKIEVEGKV----------------QSV 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +    +     L        L      +          S  
Sbjct: 277 SRTNGQDAIAIQIVKGQDANTVTVVNAVKDLMKDEEK-RLDGLNVDISLDQGAPIEDSVF 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      + ++++ + +   K  +++  SI ++V + L LL+ +  TL + ++  I
Sbjct: 336 TMIEKAVFGGAIAVLIILLFLRDFKSTIISIVSIPVSVFMALLLLNWMDITLNIMTLGAI 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ---SVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            + IG  +D +I+V E I       Q   +    +       +  I  S +  +     L
Sbjct: 396 TVAIGRVIDDSIVVVENIYRRIHLKQEKLTGRALIREATIEMFKPILSSTLVTVAVFAPL 455

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F GG        FA+TM  ++  S+  AI+IV A+  F+ R K       +       +
Sbjct: 456 IFVGGMVGELFMPFALTMTFALGASLLVAITIVPALSHFLFRKKLYGEKKESQHKEVGKL 515

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                    +A    +  S++     +  L    L          +  +          +
Sbjct: 516 ATWYKGVLEKALNHKIITSLIAIFLLVGSLALTPLIGFSFMGSQEEKVMYLTYTPSTGEL 575

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
                +             + + L        +  
Sbjct: 576 ADETAANVEKVEKELMKRKDVDILQVSITDANNVD 610



 Score = 94.0 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 91/236 (38%), Gaps = 3/236 (1%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + +E         +    +   +  ++ Q  ++V     ++ + K   + +    +  +
Sbjct: 264 IAKIEVEGKVQSVSRTNGQDAIAIQIVKGQDANTVTVVNAVKDLMKDEEKRLDGLNVDIS 323

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
              G  I   +       V   AIA+LI +     +   + +I ++ + +   L      
Sbjct: 324 LDQGAPIEDSVFTMIEKAVFGGAIAVLIILLFLRDFKSTIISIVSIPVSVFMALLLLNWM 383

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  ++D +VV + + + + L    ++ R LI ++  E     + 
Sbjct: 384 DITLNIMTLGAITVAIGRVIDDSIVVVENIYRRIHLKQEKLTGRALIREATIEMFKPILS 443

Query: 775 TSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +++       P+   G   G +   FA+ M F +  +   +I I   +  F++  +
Sbjct: 444 STLVTVAVFAPLIFVGGMVGELFMPFALTMTFALGASLLVAITIVPALSHFLFRKK 499



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/240 (14%), Positives = 87/240 (36%), Gaps = 8/240 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L  ++ G         +  +   +                 KK     +P         
Sbjct: 791  ELVDVEEGTTLNSLSRSKGEYFATVSGTIIGDDISKATSAADKKIDKLDLPKGVTTGVAG 850

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
            V   +     + G+  ++ +   +   + + F +       + +L   +        + G
Sbjct: 851  VAADMQETFTKLGV-AMLAAIAIVYFILVVTFGEGLAPFAILFSLPFAVIGAFVGLFVTG 909

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +++ +  +L LIG  V + +V+ DR+   + +    +  R+ I ++    L   + T
Sbjct: 910  QTISVSVMMGLLMLIGIVVTNAIVLVDRI---IHMEHAGLVMREAILEAGATRLRPILMT 966

Query: 776  SMAAFISVLPMAV-WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++A   +++PMA+  GGS +     AI +  G++ +   ++ +   +   +     KN +
Sbjct: 967  AIATIGAMVPMALGSGGSGLISKDLAITVIGGLLSSTLLTLVVVPIVYEMLSKMLKKNRK 1026


>gi|218260945|ref|ZP_03475995.1| hypothetical protein PRABACTJOHN_01659 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224293|gb|EEC96943.1| hypothetical protein PRABACTJOHN_01659 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1041

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 78/683 (11%), Positives = 193/683 (28%), Gaps = 56/683 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVN 67
           L  +IC + L+IA       + +D FP       +           ++ E +    + V 
Sbjct: 14  LVVLICSLLLMIAGTYTAFHTDVDVFPDLNAPTVV-----------IMTEANGMAPEEVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   +          S     + + + F            V+  L  V+  L 
Sbjct: 63  RLVTFPVETAVNGAMDVRRVRSSSTTGFSVVWVEFDWGTDIYRARQIVSEKLAVVSESLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISH----------AIEQSMEIIRQRIDQIGIS 177
            +  K  L   +     +++    +D+               ++           ++  +
Sbjct: 123 ENVGKPTLGPQSSILGEMMIIGLTVDEASESRDDSRTTSTTQMDLRTIADWTIRPRLLST 182

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               Q       + +     DP+R++    +  ++        N          +  +  
Sbjct: 183 GGVAQVAVIGGDIKEYQILLDPARMKHYGVSLGEVLT-VTRNMNRNANGGVLYEYDNEYI 241

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               L     E  G  +     +F                       +    IG     +
Sbjct: 242 IRGVLSTANAEEIGKGVVKTVGDFP-----------------VLLENIATVKIGSKSPKL 284

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                   P +   +       + + T +   I+A + +     + ++    R       
Sbjct: 285 GTASERAKPAVLITVTKQPNTSTIDLTEKLDAIMADLQKNLPADVHVSTDIFRQSRFIDS 344

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S +  K +    +  V+IVLF+ ++  +  +++  ++ L++++++  L  +G T+   S+
Sbjct: 345 SINNVKNSLFEGSFFVVIVLFLFLMNVRTTVISLVALPLSLLVSILALHYMGLTINTMSL 404

Query: 418 AGIVLGIGLAVDSNILVNERIREENR--------KNQSVFCSLDMGFSRAYSTIFDSNIT 469
            G+ + IG  VD  I+  E + +  R        + +S+   +          I +S + 
Sbjct: 405 GGMAIAIGSLVDDAIVDVENVYKRIRENRLLPPDQQRSILEVVFDASREVRMPILNSTLI 464

Query: 470 ALIATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--- 523
            +++ V LFF  G   R      I   +++  S   A+++   +  +++  K        
Sbjct: 465 IVVSFVPLFFLHGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLNRKSTDKKVEK 524

Query: 524 -DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                     L    +    +  +        LF I                 +G   + 
Sbjct: 525 EAWVARKLKELYGRALNGALIHKKIVLGCTIGLFLIALGTFFTLGRSFLPPFNEGSFTIN 584

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V +   + L          +   +             R +            +E      
Sbjct: 585 VSSLPGISLEESDEMGRRAEELLMQVPEIQTVARKTGRAELDEHALGVNVSEIEAPFVLK 644

Query: 643 TEIVPLSTIQNTEIVGPKISREL 665
                       + +       +
Sbjct: 645 DRSRDAVMNDVRKKLSTISGANI 667



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 82/220 (37%), Gaps = 10/220 (4%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                 +     ++  ++K +   V +ST    +      S   ++  +     S   ++
Sbjct: 305 TSTIDLTEKLDAIMADLQKNLPADVHVSTDIFRQSRFIDSSINNVKNSLF--EGSFFVVI 362

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV-- 739
           +           + ++  L L +  ++      G+  N  ++  +   IG  V+D +V  
Sbjct: 363 VLFLFLMNVRTTVISLVALPLSLLVSILALHYMGLTINTMSLGGMAIAIGSLVDDAIVDV 422

Query: 740 --VYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSV 793
             VY R+R+N  L      S  +++  +  E     + +++   +S +P+       G +
Sbjct: 423 ENVYKRIRENRLLPPDQQRSILEVVFDASREVRMPILNSTLIIVVSFVPLFFLHGMEGRM 482

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +    I     +  +   ++ +   +  ++ + ++ + ++
Sbjct: 483 LVPLGIAFIVALFASTVVALTLTPVLCSYLLNRKSTDKKV 522



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 69/156 (44%), Gaps = 10/156 (6%)

Query: 681  LIYIWIRFKWYFAL-GAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDK 737
            +I++ +  ++  A    +  L L +    G F L     E ++ A+   ++L G +  + 
Sbjct: 888  VIFLLLYNEFKDAKESGVVLLNLPLALIGGVFILKLTSGEVSIPAIIGFISLFGIATRNG 947

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++             ++  +  + +   + L   + T++++ ++++P+A+     G+ I
Sbjct: 948  MLLISHY--THLRTVENVPLKQAVLQGSMDRLNPILMTALSSALALIPLALNGDLPGNEI 1005

Query: 795  GS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             S  A  +  G++ +   + FI  PI+  + +   K
Sbjct: 1006 QSPMATVILGGLLTSTFLNGFII-PIVYLLMNKEDK 1040


>gi|291281525|ref|YP_003498343.1| Cation efflux system protein cusA [Escherichia coli O55:H7 str.
           CB9615]
 gi|290761398|gb|ADD55359.1| Cation efflux system protein cusA [Escherichia coli O55:H7 str.
           CB9615]
          Length = 1047

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 151/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                         + +   E G   +          P        
Sbjct: 236 YLQT------------------LDGFNHIVLKASENGVPVYLRDVAKIQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVVGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITNASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|114776849|ref|ZP_01451892.1| Heavy metal efflux pump [Mariprofundus ferrooxydans PV-1]
 gi|114552935|gb|EAU55366.1| Heavy metal efflux pump [Mariprofundus ferrooxydans PV-1]
          Length = 1051

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 81/687 (11%), Positives = 185/687 (26%), Gaps = 49/687 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N  +V++++ +       A+ N      LD  P       I                  
Sbjct: 11  RNKLIVLIFTGLIIAAGAFAVKNI----ALDAIPDLSDVQVI---------VFTKYAGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +    +         + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPHSKVVRGYSFFGFSVVYVIFEDGTDMYWARSRVLEYLNYV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       L    T                     E            +       +
Sbjct: 118 AGRLPAGVTPTLGPDATGVGWIYEY-ALVDRSGKHDLAELRSIQDWYMRYALQTVHGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + Q   E DP+ L +   +  K+       NN   G +  +         +  
Sbjct: 177 VASIGGFVKQYQVEVDPNALAEYGISLEKVKHAIKRSNNDVGGSLIEMGETEYMVRGKGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   ++                    + +  D  G              P        +
Sbjct: 237 LKGIADLE------------------SIPVGVDAHGTPILLRDVAHVHLGPELRRGLAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   +   +   TI+        L+AG       +           + +  
Sbjct: 279 NGEGEVAGGVIIMRYGENALTTIKAVRKKLQELKAGLPAGVEIVPTYDRGDLIERAVANL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K        ++ +V  + +++ +  LVA  ++ L V++   L+   G    + S+ GI +
Sbjct: 339 KDKLVEEFLVISLVCMLFLMHARSALVAIITLPLGVLMAFILMQWQGLAANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKN----------QSVFCSLDMGFSRAYSTIFDSNITALI 472
            +G  VD  I++ E   +   ++             + ++          +F S +   +
Sbjct: 399 TLGAMVDGAIVLIENAHKHLERSERSKASSLTIPERWAAVGRASREVGPALFFSLLIITV 458

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + + +F      G   +  A T   ++L S   AI++V  +M + IR + +         
Sbjct: 459 SYMAIFTLEAQEGRMFKPLAFTATYAMLGSALLAITLVPLLMGWFIRGRVLPEAKNPVNR 518

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLL-FTHGLNYGIDFKGGIQLGVLANRP 588
                   +    ++ R+  V I+++        L            +G I         
Sbjct: 519 ALQWAHGPVLAAALKHRWLTVLIAVVLLFSMAVPLSRIGSEFMPPLDEGDILYMPTTFPG 578

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + ++  R  ++     D   + F   ++   +       + A    +     ++      
Sbjct: 579 ISITKARELVQQ---TDKILKTFPEVQSVFGKAGRADTATDAAPLAMVETIIRLKPKGDW 635

Query: 649 STIQNTEIVGPKISRELIRKGIVGVII 675
              Q T     K     IR   +    
Sbjct: 636 PNPQKTTQQLMKEMDAAIRFPGLANAW 662



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 50/152 (32%), Gaps = 10/152 (6%)

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD------- 742
                +  + ++   +          G   ++      + L G +    V+V         
Sbjct: 894  LMAPVVVLLSVPFALIGGFWLVWWLGYNLSVAVAVGFIALAGVAAEIGVLVLTFIDQEVA 953

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
            R R+      +  + R  +   +   +     T+ A    ++P+ +    G  V+   A 
Sbjct: 954  RRREAAGGMLSPDAMRAAVQSGVARRVRPIAMTATAVIAGLIPIMLGSGTGSDVMQRIAA 1013

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            PM  G+V     S+ +   I   +  +R K A
Sbjct: 1014 PMIGGMVTTTLLSLIVLPVIYGLLLQYREKQA 1045



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 63/165 (38%), Gaps = 14/165 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++IS + ML  +  R     AL AI TL L +          G+  N+ ++  +   +G 
Sbjct: 347 LVISLVCMLFLMHAR----SALVAIITLPLGVLMAFILMQWQGLAANIMSLGGIAITLGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFR-------DLIDKSINETLGRSVYTSMAAFISVLP 785
            V+  +V+ +   K+++    S +           + ++  E      ++ +   +S + 
Sbjct: 403 MVDGAIVLIENAHKHLERSERSKASSLTIPERWAAVGRASREVGPALFFSLLIITVSYMA 462

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +         +    A    + ++ +A  +I +   ++ +    R
Sbjct: 463 IFTLEAQEGRMFKPLAFTATYAMLGSALLAITLVPLLMGWFIRGR 507


>gi|85373728|ref|YP_457790.1| heavy metal RND efflux transporter, CzcA family protein
           [Erythrobacter litoralis HTCC2594]
 gi|84786811|gb|ABC62993.1| heavy metal RND efflux transporter, CzcA family protein
           [Erythrobacter litoralis HTCC2594]
          Length = 1055

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/570 (11%), Positives = 146/570 (25%), Gaps = 44/570 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
            + ++  IGL +A    +  + +D  P            D++              V   
Sbjct: 14  FFVVLAAIGLALAGFWAVRTTPVDALPDLS---------DVQVVIRSNYPGQAPRIVEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  V ++L   
Sbjct: 65  VTYPMATTMLSVPGAKTVRGYSFFGDSYVYVIFEDGTDLYWARSRVLEYLNQVQNRLPDG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            +  L    T                                 ++       +      +
Sbjct: 125 VQSTLGPDATGVGWIYEY-ALVDRSGGHDLAGLRSLQDWFLRYELKTIPGIAEVASVGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     DP R+  L  T A++       N    G +  +            +    + 
Sbjct: 184 VKQYQIVLDPYRMASLGVTLAQVVRAVQAGNQETGGSIVEMGEAEYMVRASGYLGTLAD- 242

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA-PVI 308
                                     E G          NI     +      L     +
Sbjct: 243 ------------------FRSIPLRAEAGGTPVTLDDVANIQIGPELRRGIAELNGEGEV 284

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +        I         L+A        +           S          
Sbjct: 285 AGGIVILRQGADARSAIAAVEAKLEQLQASLPEGVEIVTTYDRSQLIDASVENLTSKLIE 344

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              +V +V  + + + +  LVA  ++ L V+    ++   G    + S+ GI + +G  V
Sbjct: 345 EFIVVALVCLLFLWHARSALVAVVTLPLGVLAAFIVMRFQGVNANIMSLGGIAIAVGAMV 404

Query: 429 DSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           D+ +++ E   +   +            Q  +  +          +F S +   ++ + +
Sbjct: 405 DAAVVMIENAHKHLERWAEENPDTVLSVQERWRIVADASKEVGPALFFSLLIITLSFLPV 464

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G      A T   ++  +   +I++V  +M +++R K                
Sbjct: 465 FTLQAQEGRLFAPLAFTKTYAMAAAAILSITLVPVLMGWLVRGKIPAEDSNPVNRVLTRA 524

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLL 564
                   MR     + I+ L  + ++   
Sbjct: 525 YRPGLDWVMRRPKTALVIAGLVFLTTLVPF 554



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 81/253 (32%), Gaps = 9/253 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + + L  V     +     +  +         + ++ +   SV       +  +   
Sbjct: 791  PSGQQITLGTVAQVRVTSGPPMLKSEQGRPTSYVYIDVRGRDLSSVVGDLQEVIAAEVDL 850

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                  +         +    L  + +V   ++ I +L+Y+  R ++  AL  + TL   
Sbjct: 851  PPGVSLSYAGQFEYLTRAYERL--QIVVPATLAIIFLLLYLIFR-RFDEALLIMGTLPFA 907

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR---KNMKLYTTSISFRDL 760
            +T       L G   ++      + L G S    V++   ++   +       +      
Sbjct: 908  LTGGFWLLYLMGYNQSVATAVGFIALAGVSAEFGVIMLIYLKAALERRGEDPDAEEVSAA 967

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I +     +     T       + P+ +    G  V+   A PM  G++ A   S+F+  
Sbjct: 968  IREGALLRVRPKAMTVAVILAGLFPILIGTGAGSEVMSRIAAPMIGGMITAPLLSMFVLP 1027

Query: 818  PILLFIYDWRAKN 830
               L +   R + 
Sbjct: 1028 AAYLLLRRPRPER 1040



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 14/210 (6%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    LE ++  + E V + T  +   +       L  K I   I+ A+  L+++W   
Sbjct: 302 AAVEAKLEQLQASLPEGVEIVTTYDRSQLIDASVENLTSKLIEEFIVVALVCLLFLWHAR 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR--- 745
               AL A+ TL L +          G+  N+ ++  +   +G  V+  VV+ +      
Sbjct: 362 S---ALVAVVTLPLGVLAAFIVMRFQGVNANIMSLGGIAIAVGAMVDAAVVMIENAHKHL 418

Query: 746 -----KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA-- 798
                +N     +      ++  +  E      ++ +   +S LP+          FA  
Sbjct: 419 ERWAEENPDTVLSVQERWRIVADASKEVGPALFFSLLIITLSFLPVFTLQAQEGRLFAPL 478

Query: 799 -IPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                + +  AA  SI +   ++ ++   +
Sbjct: 479 AFTKTYAMAAAAILSITLVPVLMGWLVRGK 508


>gi|85715215|ref|ZP_01046198.1| probable cation efflux system protein [Nitrobacter sp. Nb-311A]
 gi|85697861|gb|EAQ35735.1| probable cation efflux system protein [Nitrobacter sp. Nb-311A]
          Length = 1057

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 67/535 (12%), Positives = 147/535 (27%), Gaps = 40/535 (7%)

Query: 12  SMICCIGLLIALPNFLPQS---MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            ++   G   A    L       LD  P       I          +          +  
Sbjct: 13  LVLVLFGTGFAAAAGLYALVHLPLDAIPDLSDTQVI---------VYTEYPGQAPQVIED 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +          + K  +         + + + F D         +V  FL G  S+L  
Sbjct: 64  QVTYPLTTAMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDIYWARSRVMEFLNGAASRLPA 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                +    T        +  + +  ++                +  +E   +      
Sbjct: 124 GVTPTIGPDATGVGWVYQYAVMSKELNLADTRTIQD---WNLRFALAKAEGVAEVASIGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            + Q     DP R+R    +  K+       N    G    +         +  +++  +
Sbjct: 181 FVKQYNVVLDPQRMRDRGISLQKIRDAIRSSNADVGGRTVELSEFEYVIRGRGYIKNIND 240

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +                      +     G     +        P        +     +
Sbjct: 241 LG-------------------NIVLKTSNGTPVLLQDVAHVELGPDERRGIAELNGEGEV 281

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +  ++    IE        + +        +           +    K T   
Sbjct: 282 ASGIVLQRFGVNALDVIENVKKRFKEIASSLPKSVEIVPVYDRSNLIYSAIDTLKHTLLE 341

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + +V +V  + +L+ +  LVA   + + V++    + LLG    + S+ GI + IG  V
Sbjct: 342 ESIVVALVCIVFLLHVRSALVAILMLPVGVLMAFGAMKLLGLGSNIMSLGGIAIAIGAMV 401

Query: 429 DSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           D+ I++ E   +        QS    L    S     +F S +   ++ + +F      G
Sbjct: 402 DAAIVMIENAHKHLERAEPEQSRVQVLIDAASEVGPALFFSLLIITVSFMPIFTLESQEG 461

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
                 A T   ++  +   ++++V A+M+  +R + +             I   
Sbjct: 462 RLFSPLAFTKTFAMAAAALLSVTLVPALMVIFVRGRIVPEHRNFINRFLIWIYRP 516



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++++ + ++  + +R     AL AI  L + +    G   L G+  N+ ++  +   IG
Sbjct: 343 SIVVALVCIVFLLHVR----SALVAILMLPVGVLMAFGAMKLLGLGSNIMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+  +V+ +   K+++      S   ++  + +E      ++ +   +S +P+     
Sbjct: 399 AMVDAAIVMIENAHKHLERAEPEQSRVQVLIDAASEVGPALFFSLLIITVSFMPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRLFSPLAFTKTFAMAAAALLSVTLVPALMVIFVRGR 497



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 76/266 (28%), Gaps = 20/266 (7%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               I + + A   V L  V     +     I  +N        + ++ +   S       
Sbjct: 773  ATDILVPMPAGGAVPLGEVAKVEPARGPTSIRTENGQLATYIYLDVRDRDLGSYVADAQR 832

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFAL 694
             + +                    + +  L     + V ++   + + +++ F      L
Sbjct: 833  AVTENIQFPAGYYVVWSGQYEYLQRAAARLK----IVVPVTLAVIFLLLYLNFGAMTETL 888

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-----------DR 743
              + +L   +   L    L G   ++      + L G +    VV+             R
Sbjct: 889  IVMLSLPFALVGGLWMMWLLGFNLSVAVAVGFIALAGVAAETGVVMLIYLDQALAEMKAR 948

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
             R       T     D I     E +   + T +A    +LP+      G  ++   A P
Sbjct: 949  -RDAESRMLTRQDLHDAIMLGAVERVRPKMMTVVAIMAGLLPIMWSTGSGSEIMQHIAAP 1007

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDW 826
            M  G+  +   ++ +   I       
Sbjct: 1008 MIGGMTSSTLLTLIVIPAIFGVAKGR 1033


>gi|312623051|ref|YP_004024664.1| protein-export membrane protein secd [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203518|gb|ADQ46845.1| protein-export membrane protein SecD [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 415

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E  +  +   II  + + +++ I ++    L A   L+  I   +       
Sbjct: 230 AIGPSLGNEAFKSTLKAGIIGILLVFLFMIIFYRLP-GLVADIALVAYIVILVAIVGYAK 288

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I   L  +A ++   G +V+  ++++ R+++ ++   +  + R  +D      L   + +
Sbjct: 289 ITLTLPGIAGIILSAGMAVDANILIFARLKEELR---SGKTLRAAMDAGFRRALNAVIDS 345

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++   I+ + +   G   I  FA  +  GIVV+  ++I +   +L
Sbjct: 346 NVTTIIAGIVLLFLGTGPIKGFAWTLTIGIVVSFFTAITVTRFLL 390



 Score =  119 bits (298), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 121/407 (29%), Positives = 214/407 (52%), Gaps = 28/407 (6%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              +K +      K    ++ +   +      +E ++++IR R+D     ++T    GS 
Sbjct: 35  PSVQKVIRYGLDLKGGVYIVYEAAKENPTRREMESALQLIRTRLDMRNFYDATATIQGSK 94

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI +++PG +DP    Q +G TA + F                                +
Sbjct: 95  RIRVEIPGVKDPDEAIQYIGRTALIEF--------------------------KGPSGDL 128

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +SG ++    A         VV + FD+ G ++F E T+  +G+ + + LDG++++ P+
Sbjct: 129 IVSGRNVVD--AYAQQTASGYVVALKFDKEGTKKFAEGTKKYLGQNIGIYLDGKLISNPI 186

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I +G+A I G   +E A  LA  ++AG+LP  L ++E + +G  LG+++      A
Sbjct: 187 VQAEIDNGEAVIEGMKDLEEAKTLAQQIKAGALPFALKVIESKAIGPSLGNEAFKSTLKA 246

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + G++L+ LFMI+ Y   GLVAD ++   +++ +A++     TLTLP IAGI+L  G+A
Sbjct: 247 GIIGILLVFLFMIIFYRLPGLVADIALVAYIVILVAIVGYAKITLTLPGIAGIILSAGMA 306

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+NIL+  R++EE R  +++  ++D GF RA + + DSN+T +IA +VL F G G ++G
Sbjct: 307 VDANILIFARLKEELRSGKTLRAAMDAGFRRALNAVIDSNVTTIIAGIVLLFLGTGPIKG 366

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           FA T+ + I++S FTAI++ R ++  II     K I      +   +
Sbjct: 367 FAWTLTIGIVVSFFTAITVTRFLLTSIINTGLFKDIRWYGGKKTREV 413



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 1   MRNNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N      L   ++      I       +      PS   +  I  GLDL+GG ++V E
Sbjct: 1   MQNKSLAKFLIGCLVIAFAFYIVFFGL--EIGTASIPSV--QKVIRYGLDLKGGVYIVYE 56

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
             +++     ++     +R+ L        +     + +I +     +  +     +   
Sbjct: 57  AAKENPTRREMESALQLIRTRLDMRNFYDATATIQGSKRIRVEIPGVKDPDEAIQYIGRT 116

Query: 119 L 119
            
Sbjct: 117 A 117


>gi|302878091|ref|YP_003846655.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
 gi|302879389|ref|YP_003847953.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
 gi|302580880|gb|ADL54891.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
 gi|302582178|gb|ADL56189.1| heavy metal efflux pump, CzcA family [Gallionella capsiferriformans
           ES-2]
          Length = 1028

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 68/657 (10%), Positives = 187/657 (28%), Gaps = 49/657 (7%)

Query: 31  MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM----YSDELRSFLKKEGI 86
            +D FP   P               + +  +        ++       +   + L     
Sbjct: 35  PVDAFPDVTP-------------VQVSIYTESPGLAAEDVEKLLTFPVETAMAGLADVEE 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                    + +++ F D+         V   L    +++     +  L   T     + 
Sbjct: 82  IRSVSLFGLSYVSVYFKDNVDIYFARRLVGEKLIEAKNRIPQGYGEPGLGPNTSGLGQVF 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                        ++            +  +      +       Q     +P +L +  
Sbjct: 142 WYTIEAADKKLSEMDLRTLQDWNVRLVLRTASGVDDVMSWGGQEKQYQVLINPQKLIKYG 201

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
                +       N    G         D    QYLV     +S +              
Sbjct: 202 LNFKTVMETLAANNRQVGGQ------YLDIGQEQYLVRGLGLVSNV-------------- 241

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           + + ++          +      + +  A+           +   +   +   +    ++
Sbjct: 242 QDIGNVVLATREGTPVYVRDVAEVKEGPALRSGAVTKDGKEVVLGMALQRIGENAKNVVD 301

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   ++                     +    +      + LV I+LF+ +   + 
Sbjct: 302 AVKKKLNTVQQALPAGVAINTVYDRTELVDKAVKTAENALIEGSILVAIILFLFLGEIRS 361

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER----IREEN 442
            +V   ++ L ++++  ++   G +  L S+AG+ +GIG+ VD  +++ E     +  + 
Sbjct: 362 AVVVIIALPLAMMISFIMMQRWGLSANLMSLAGLAVGIGMMVDGAVVMVENGFRLLSHQT 421

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILIS 499
            K  +    +        +    + +  ++  + LF      G   +  A+T+  +++ S
Sbjct: 422 GKTVNKTHVILEAAREVINPTAFAILIIIVVFLPLFALTGLEGKLFKPMALTITFAMVGS 481

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSIC 559
           +   +++V  M   I++ K+ K   I   ++   +P        + +     + +L +  
Sbjct: 482 LVLTLTLVPVMSALILKPKEEKDTFIVKWAKRLYLPLLDWALENKRKVVSGALLLLVASL 541

Query: 560 SICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLV 619
           ++              +GGI   V +     L       + ++    +F   D     + 
Sbjct: 542 ALIPF-LGKEFMPTLQEGGIMFRVTSIPSTSLEESIRLSKRIEAELKTFPQTDSAIAMIG 600

Query: 620 RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
           R +      V    +L      +          +   +  ++  +L +     V  +
Sbjct: 601 RAEKGETSDVNYMEILVN----LKPRDQWPKAISFPDLSREMQDKLEQAVPTAVFAA 653



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/261 (16%), Positives = 95/261 (36%), Gaps = 3/261 (1%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           +   G + L      PV +  V    E   +   +      E    + LQ    ++    
Sbjct: 241 VQDIGNVVLATREGTPVYVRDVAEVKEGPALRSGAVTKDGKEVVLGMALQRIGENAKNVV 300

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWY 691
             ++     + + +P     NT     ++  + ++     +I  +I + I +++   +  
Sbjct: 301 DAVKKKLNTVQQALPAGVAINTVYDRTELVDKAVKTAENALIEGSILVAIILFLFLGEIR 360

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MRKNMKL 750
            A+  I  L L +  +      +G+  NL ++A +   IG  V+  VV+ +   R     
Sbjct: 361 SAVVVIIALPLAMMISFIMMQRWGLSANLMSLAGLAVGIGMMVDGAVVMVENGFRLLSHQ 420

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
              +++   +I ++  E +  + +  +   +  LP+    G     F  PMA  I  A  
Sbjct: 421 TGKTVNKTHVILEAAREVINPTAFAILIIIVVFLPLFALTGLEGKLF-KPMALTITFAMV 479

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            S+ +   ++  +     K  
Sbjct: 480 GSLVLTLTLVPVMSALILKPK 500



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 85/259 (32%), Gaps = 11/259 (4%)

Query: 577  GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
              I +       + LS + +         +  +         + ++ +  DS  +    +
Sbjct: 775  NNIPIRTQNGALIPLSKIATVDLDEGYSFVRREQLQRYAVIQMDVKGRDVDSFVKEAEAK 834

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            + ++                   +   +L    IV + I  I +L+Y        +A   
Sbjct: 835  IKREVKLPSGYWIEWGGAFENQQRAMAKLT--LIVPLTIGLIFILLYTAFN-SLTYATLI 891

Query: 697  ITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            I  +    I   +G F + G   ++ +    + + G ++ + +V+   +          +
Sbjct: 892  IANVPFATIGGVIGLF-ITGQYLSVPSAIGFIAVFGVAMLNGIVLVTFLNDQR---ERGL 947

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
            S R  + +     L   + T+  A   ++PM +    G       A  +  G+  + + +
Sbjct: 948  SVRAAVKQGAALRLRPVLMTASIAIFGLVPMLLSSGVGAETQRPLATVVVGGLFTSTALT 1007

Query: 813  IFIAAPILLFIYDWRAKNA 831
            + +   +  ++   R +  
Sbjct: 1008 LLLLPLMYEWVETRRERKQ 1026


>gi|328883047|emb|CCA56286.1| putative drug exporters of the RND superfamily [Streptomyces
           venezuelae ATCC 10712]
          Length = 729

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 73/582 (12%), Positives = 169/582 (29%), Gaps = 51/582 (8%)

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           G    V +        V      +  +       +E        L       +   +   
Sbjct: 116 GSDQIVSVSDPYTAQAVSQNGSTAYVSVAYKVNAMELTDATREALTDAGHDAQGKGLTVE 175

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
             G  L +         +   +  IVL +         +   +  + V + ++ ++ L  
Sbjct: 176 VGGDALQTMPETGSGEIVGVVIAGIVLVLTFGSLVAAGLPLLTAIIGVGIGVSSITALAN 235

Query: 411 TLTL---PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
            L L    S   +++G+ + +D  + +  R R E  + +    +       A S +  + 
Sbjct: 236 VLDLGSTTSTLAMMIGLAVGIDYALFIVSRYRAELAEGREKEDAAGRAVGTAGSAVVFAG 295

Query: 468 ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           +T +IA V L       +         +++I++  A++++ AM+ F       +      
Sbjct: 296 LTVVIALVGLAVVNIPMLTKMGFAAAGTVVIAVLIALTLIPAMLGFAGDKVIGRKQRKGT 355

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG--------- 578
             +               R   + + I         L    L  G+   G          
Sbjct: 356 AKKSDKPNGGTRWARFVIRRPVMVLLIGVLGLGAIALPAASLEMGLPDDGVKPTSTTERR 415

Query: 579 ---------------IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                            L V+           S ++ L+           +      +  
Sbjct: 416 AYDALSDGFGPGFNGPLLVVVDGDKATADRTVSTIKGLEGWAAVTPATPNKAGDAAMITV 475

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI--VGVIISAIAML 681
            P D  +      +V            +     +    S+++    +  + +++    +L
Sbjct: 476 VPKDRPSSGATETLVHDIRGATGDDVLVTGATAMNIDFSQKMNDALVPYLALVVGLAFLL 535

Query: 682 IYIWIRFKWYFALGAITTLILDITKTL----------GFFALFGIE-----FNLTAVAAV 726
           + +  R      L A    +L +   L             +LFG+E      ++  +  V
Sbjct: 536 LTVVFR-SILVPLKAALGFLLSVVAALGAVVAVFQWGWLGSLFGVEQTGPIMSMMPIFMV 594

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
             + G +++ +V +  RMR+    Y       + I      +  R V  +    I+V   
Sbjct: 595 GVVFGLAMDYEVFLVTRMRE---AYVHGERPGEAIVTGFRHS-ARVVTAAAVIMIAVFSG 650

Query: 787 AV-WGGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDW 826
            +     +I      +A  ++  A    + I   +L  +   
Sbjct: 651 FIGMTDQMIKMIGFGLAVAVLFDAFVVRMAIVPAVLALLGHK 692


>gi|159025961|emb|CAO87891.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1034

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/618 (12%), Positives = 182/618 (29%), Gaps = 52/618 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +  +++L   +  IGL      FL +  +D  PS      ISL         + +   
Sbjct: 13  RRHIGVLMLTIAVIIIGLF-----FLNRLQVDLLPSITYPR-ISL--------RMNVPGV 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  S  +         R+ + ++ L F          ++ T     
Sbjct: 59  SPEVILEEVTKPLEEGMSATEGVVQVYSETREGRMRVDLFFQPGGDLNVALNEATESFNR 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    ++  L       + +       D +     +  +    +   ++G  E   
Sbjct: 119 VRQNLPDIIEEPRLNKFEPSRLPVYEFALVSDTLP--LKDLRLFADEELGRELGFVEGVA 176

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    D  RL+ L     ++       N    G                
Sbjct: 177 VVDVIGGVREEIQVNIDLQRLQSLGVGLNQVLDTLKRRNQDISGGRLEGE---------- 226

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G  L  A   F        + ++       + +      +           
Sbjct: 227 --------TGEPLTRAVGKFKNVADIQDLALTDSNNPEEKIYLRDVARVIDGTEEQRIFV 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI--KLNIVEERNVGADLGSD 359
            L      +     +   +    +E      A L+   L       +           + 
Sbjct: 279 TLNGKNAVRVSVQKQPNANTIAVVEGVKKRIAELKKSRLMTGGMQVVPTTDESVFIQNAV 338

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +    +      L  + +F+ +   +   +   +I L+ ++ +  + L G ++ + S+ G
Sbjct: 339 NNVVSSGLAGTILAGLTVFVFLGSLRQTFIITLAIPLSTLVAIICMKLFGLSINVFSLGG 398

Query: 420 IVLGIGLAVDSNILVNERI---REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + LG+G+ VD++I++ E I     +N+  +              S +  S  T L++ + 
Sbjct: 399 LALGVGIVVDNSIVMLENIALKVSQNQNKRDFLEIARNSSQEVESALVASTATNLVSILP 458

Query: 477 LFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
               GG          +T+  ++  S+  A+++V  +   ++  +  + I    L + F 
Sbjct: 459 FLLLGGFISLLFNEIILTISFAVAASLLCALTVVPMLASRLLNMRVDRGIQRFWLLKVFS 518

Query: 534 I----------PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                           I   R     +   IL         +     +     G + +  
Sbjct: 519 QRLEGLSILYGRFLAKIIRYRIAVILLAFLILGGSSFYLWQYIPQEVFSRIQTGQVNVFA 578

Query: 584 LANRPVDLSVVRSNLESL 601
                 +L+  R  +  +
Sbjct: 579 QFPPGTNLNTNRQVMREV 596



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 68/185 (36%), Gaps = 6/185 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              +  +        ++  G+ G I++ + + +++               + L     + 
Sbjct: 326 PTTDESVFIQNAVNNVVSSGLAGTILAGLTVFVFLG---SLRQTFIITLAIPLSTLVAII 382

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              LFG+  N+ ++  +   +G  V++ +V+ + +   +        F ++   S  E  
Sbjct: 383 CMKLFGLSINVFSLGGLALGVGIVVDNSIVMLENIALKVSQNQNKRDFLEIARNSSQEVE 442

Query: 770 GRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              V ++    +S+LP  + GG    +     + ++F +  +   ++ +   +   + + 
Sbjct: 443 SALVASTATNLVSILPFLLLGGFISLLFNEIILTISFAVAASLLCALTVVPMLASRLLNM 502

Query: 827 RAKNA 831
           R    
Sbjct: 503 RVDRG 507



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/220 (12%), Positives = 74/220 (33%), Gaps = 11/220 (5%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
             ++   + +      +     +  +     +  +P                     G++ 
Sbjct: 820  NQRQVFIIIGSLVEGAKLSDALAGVQSVLNSTPLPDGISILPSAAAMSNQEIQGSLGLLA 879

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF--ALFGIEFNLTAVAAVLTL 729
             + S   + + + +++      L  +  L + +    G F   L     N   +  V+ L
Sbjct: 880  GL-SVFLVFVVMAVQYNSLIDPL--VIMLTVPLALAGGIFGLYLTKTPINAIVIVGVVLL 936

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G  VN+ +++ +    N        +    I K+  + L   + T++   + + P+A+ 
Sbjct: 937  VGIVVNNGIIMVE--LANQLRQEFGFTRLQAILKAAPQRLRPILMTTVTTVLGLFPLALG 994

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               GG  +    I +  G+ +A   ++FI     +     
Sbjct: 995  LGEGGEFLQPLGIVVFSGLSLATLLTLFIIPCFYVLFSRK 1034


>gi|218248419|ref|YP_002373790.1| acriflavin resistance protein [Cyanothece sp. PCC 8801]
 gi|218168897|gb|ACK67634.1| acriflavin resistance protein [Cyanothece sp. PCC 8801]
          Length = 1061

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 65/512 (12%), Positives = 140/512 (27%), Gaps = 34/512 (6%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L++++   G+L      L        P         LG                  V  
Sbjct: 16  VLFTLLAIFGILSLFNLPLELQPGGDRPEITITTP-YLG-------------ASPTEVED 61

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    +E    +        +     + I + F  +         V   LQ V +    
Sbjct: 62  LVTRPIEERLEEVPGIQEITSTSSAGTSSINVEFTWNTDINRGLLDVLNKLQQVEALPPE 121

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
             + N+ V +      + +     +            +    + ++   +   Q L S  
Sbjct: 122 ADESNVEVVSAGSSPMMWVILIPKEGFTPDESRYRDLVDDVIVPRLRQVQGVGQFLISGG 181

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
              ++    DP  L     T   +       N   +G    +            + D  +
Sbjct: 182 TDREVEVIVDPKALADRNLTIGDVVNTLRSNNRDIRGGPLILGRREYRVRTVSRINDVKQ 241

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           + G  L    +            +                     +  V       +  I
Sbjct: 242 LEGFVLRRDESGTVYLGDVAEARMGRAIQDRALVRNNEPAVGIGIMRQVGGNVPEISAGI 301

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                              A                  +          S +  +G   +
Sbjct: 302 R-----------------EALADLETRFDRQGEGITFDITYDENDYINDSIAFVQGNLIV 344

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            A L  ++L + +   +   V   +I   +I    +  L G TL + S+AG+   +G+ V
Sbjct: 345 GAILAALILLLFLGSLRTVGVIAITIPTTLITVFIVFYLFGRTLNVISLAGLAFAVGMVV 404

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAV 485
           D+ I+V E I  + ++ ++   +   G       +  S +T +     +       G   
Sbjct: 405 DNAIVVLENIFTQMQEGKTPMKAAIDGTQEVGGAMLASTLTTVAVFAPIILVTGEAGQVF 464

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
               I + +S+L S+F A+++V  +    +  
Sbjct: 465 FDIGIALSVSVLFSLFAALTLVPMLAGLFLSR 496



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 100/255 (39%), Gaps = 16/255 (6%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + V LS V   +E+     I+  + +      V +  +        +  + + + +   +
Sbjct: 792  QRVQLSDVAEVIETTGPDAINHVDLERSITLTVSVATEAPLGALVEQTEQQILEPLRNNI 851

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            P             ++  L++ G   V+   I  L+ + +     + L  + T+ +    
Sbjct: 852  PPGVRLELGGSADVLTETLLQLGATFVLSLVITYLLLVALYRSLIYPLLIMATVPM--GM 909

Query: 707  TLGFFALF------GIEFNLTAVAAVLTLI--GYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            T    +L       G+  +L  +  +  +I  G  VN+ +++ DR    ++L    + + 
Sbjct: 910  TGALLSLVLANTIPGVVVSLDMITGLGFVILTGVVVNNAILLVDRA---LQLQEQGMDYD 966

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
              +  ++++ L     ++  + + +LP+A+    G  +     I +  G++++   +  +
Sbjct: 967  ASLYYAVSDRLRPIFMSAGTSVLGMLPLAIIPGKGAELYQGLGIVLTGGLLLSTFLTPTV 1026

Query: 816  AAPILLFIYDWRAKN 830
               ++  + D++ K 
Sbjct: 1027 IPALMGLLQDFQPKK 1041



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 49/141 (34%), Gaps = 7/141 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              + AI T+   +      F LFG   N+ ++A +   +G  V++ +VV + +      
Sbjct: 362 TVGVIAI-TIPTTLITVFIVFYLFGRTLNVISLAGLAFAVGMVVDNAIVVLENI---FTQ 417

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
                +          E  G  + +++       P+ +  G    V     I ++  ++ 
Sbjct: 418 MQEGKTPMKAAIDGTQEVGGAMLASTLTTVAVFAPIILVTGEAGQVFFDIGIALSVSVLF 477

Query: 808 AASSSIFIAAPILLFIYDWRA 828
           +  +++ +   +         
Sbjct: 478 SLFAALTLVPMLAGLFLSRTE 498


>gi|53715007|ref|YP_100999.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides
           fragilis YCH46]
 gi|60682970|ref|YP_213114.1| putative metal resistance related transport membrane protein
           [Bacteroides fragilis NCTC 9343]
 gi|253566106|ref|ZP_04843560.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           3_2_5]
 gi|265766856|ref|ZP_06094685.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           2_1_16]
 gi|52217872|dbj|BAD50465.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides
           fragilis YCH46]
 gi|60494404|emb|CAH09200.1| putative metal resistance related trasport membrane protein
           [Bacteroides fragilis NCTC 9343]
 gi|251945210|gb|EES85648.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           3_2_5]
 gi|263253233|gb|EEZ24709.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           2_1_16]
 gi|301164436|emb|CBW23994.1| putative metal resistance related trasport membrane protein
           [Bacteroides fragilis 638R]
          Length = 1028

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 72/617 (11%), Positives = 174/617 (28%), Gaps = 34/617 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLAIV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  +  K  L   +     +++     D      ++           ++  +    Q
Sbjct: 118 GEELPSNVGKPTLGPQSSILGEVLIIGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L +   + DP R+R    +  ++                    +         
Sbjct: 176 VAVLGGELKEYQIQLDPERMRHYGVSMNEVMT------------------VTRGMNLNAN 217

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                E    ++     +           +   +       ++    IG     +     
Sbjct: 218 GGVLYEYGNEYIVRGVLSTANIEQLGKAVVKSIDSVPVLLEDIADVRIGPKAPKLGTASE 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +   +    A  +   T +    L  + +     +K++    R       S S  
Sbjct: 278 RGKPAVLMTVTKQPATSTLELTDKLEASLQDLRKNLPPDVKVSTDIFRQSRFIDSSISNV 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K +       V+IVLF+ +   +  +++  ++ L++++++  L  +G T+   S+ G+ +
Sbjct: 338 KKSLFEGGIFVVIVLFLFLANVRTTIISLVTLPLSLLVSILTLHFMGLTINTMSLGGMAI 397

Query: 423 GIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +  R+N+        SV   +          I +S +  +++ 
Sbjct: 398 AIGSLVDDAIVDVENVYKRLRENRLLPENERLSVIQVVFNASKEVRMPILNSTLIIVVSF 457

Query: 475 VVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LFF  G   R      I   +++  S   A+++   +  +++  +K   +        
Sbjct: 458 VPLFFLSGMEGRMLVPLGIAFIVALFASTIVALTLTPVLCSYLLGKEKGDKLPKEAFVAR 517

Query: 532 FLIPDCIA---IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           ++            +  R        LF I                 +G   + + +   
Sbjct: 518 WMKGVYEKALTWVLIHKRLTLGSTIGLFIITLGFFFTLGRSFLPPFNEGSFTINISSLPG 577

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L          +   +S            R +            +E   +        
Sbjct: 578 ISLEESDKMGHRAEELLLSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSRNE 637

Query: 649 STIQNTEIVGPKISREL 665
                 E +G      +
Sbjct: 638 LMADVREKLGTITGANI 654



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 78/221 (35%), Gaps = 12/221 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +  + ++ K    ++   + I             + +    G I   I +
Sbjct: 293 TSTLELTDKLEASLQDLRKNLPPDVKVSTDIFRQSRFIDSSISNVKKSLFEGGIFVVIVL 352

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++         + ++ TL L +  ++      G+  N  ++  +   IG  V+D +V 
Sbjct: 353 FLFLA---NVRTTIISLVTLPLSLLVSILTLHFMGLTINTMSLGGMAIAIGSLVDDAIVD 409

Query: 740 ---VYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
              VY R+R+N  L     +S   ++  +  E     + +++   +S +P+    G    
Sbjct: 410 VENVYKRLRENRLLPENERLSVIQVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGR 469

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++    I     +  +   ++    P+L      + K  ++
Sbjct: 470 MLVPLGIAFIVALFASTIVAL-TLTPVLCSYLLGKEKGDKL 509



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 89/250 (35%), Gaps = 11/250 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             VD    +    S      S    +      V+ +     +VA   +  +V     ++  
Sbjct: 781  MVDTQDGKKVPLSYIADVASSMGPNTINRENVKRKIVISANVADRDLRSVVNDIQKQVDE 840

Query: 648  LS--TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAITTLILDI 704
                        G +   E      + +      ++I++ +  ++      A+  + L +
Sbjct: 841  QIKLPEGYHIEYGGQFESEQAASRTLALTSFMSIVVIFLLLYHEFRSVKESAVILINLPL 900

Query: 705  TKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                G FAL     E ++ A+   ++L G +  + +++      N       +   + + 
Sbjct: 901  ALIGGVFALLITTGEISIPAIIGFISLFGIATRNGMLLISHY--NHLQQVEGLGVYESVI 958

Query: 763  KSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSSIFIAAP 818
            +   + L   V T++++ ++++P+A+ G      +    A  +  G++ +   + FI   
Sbjct: 959  RGSLDRLNPIVMTALSSALALIPLALSGSLPGNEIQSPMAKVILGGLLTSTFLNGFIIPI 1018

Query: 819  ILLFIYDWRA 828
            + L +   R 
Sbjct: 1019 VYLMMNGKRK 1028


>gi|264680514|ref|YP_003280424.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni
           CNB-2]
 gi|262211030|gb|ACY35128.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni
           CNB-2]
          Length = 1040

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 59/601 (9%), Positives = 153/601 (25%), Gaps = 62/601 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L ++      +        +  +D  P                   + +      
Sbjct: 13  RWLVMLATLALVGLGIY----NYQRLPIDAVPDITN-------------VQVQINTSAPG 55

Query: 65  F----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +    + + + L          R   +++T+ F D          V   +Q
Sbjct: 56  YSPLETEQRVTFPIETVMAGLPGLEQTRSLSRYGLSQVTVVFKDGTDIYFARQLVNERMQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS------HAIEQSMEIIRQRIDQI 174
                L       L   +T      + +    +            ++           Q+
Sbjct: 116 QARDALPAGVAPALGPISTGLGEIYLWTVEADEGATRPDGSPYTPMDLREIQDWVIKPQL 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +         +      P +L     T A +       N +            
Sbjct: 176 RNVAGVTEINSIGGFAKEYLVAPQPQKLAAYGFTLADIVAALERNNANVGAGYIE----- 230

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
              G QYL+    ++ GI                + ++       +        ++G   
Sbjct: 231 -RQGEQYLIRAPGQVGGI--------------ADIREVIVGSAQGQPIRVRDLADVGLGR 275

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +       ++     P    +        
Sbjct: 276 ELRTGAATDNGREVVLGTVFMLIGENSRAVAQAVHERMLVINKSLPPGVKAVTVYDRTNL 335

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ +LF+ +   +  L+    I L+++ T   +  +  +  L
Sbjct: 336 VDKAIATVKKNLIEGAALVVAILFLFLGNLRAALITALIIPLSMLFTFTGMVQMRVSANL 395

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIF 464
            S+  +  GI   +D  +++ E                      F  +      A   + 
Sbjct: 396 MSLGALDFGII--IDGAVVIVENCVRRLAHAQAAAGRSLTRSERFEEVFAAAREARRPLL 453

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +  ++  + +F      G      A+T+ +++L +M  +I+ + A +   +  K  +
Sbjct: 454 FGQLIIMVVYLPIFALTGVEGKMFHPMALTVVIALLGAMLLSITFIPAAIALFMGDKVAE 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +              S++ ++  +              +G   +
Sbjct: 514 KENRLMEWARRAYAPVLDKVMHAPAVVLTAASVIVALSLLLATRMGSEFAPNLNEGDFAI 573

Query: 582 G 582
            
Sbjct: 574 Q 574



 Score = 56.2 bits (133), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 79/217 (36%), Gaps = 8/217 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ ++++     Q    +    + +          + V +  ++     +P        
Sbjct: 808  SSVATVELAPGPNQVSREDGKRRIVVSANVRGRDIGSFVAQAQQELEGVALPAGYWTRWG 867

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                 +     R+ ++ V ++ + +   ++  F      L   T +   +T  +    L 
Sbjct: 868  GTFENL-ESARRRLMIVVPVALVLVFTLLFAMFGNVRDGLIVFTGIPFALTGGIAALWLR 926

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  +++A    + L G +V + +V+   +R    L    +     + +     L   + 
Sbjct: 927  GIPLSISAAIGFIALCGVAVLNGLVMISYIR---SLREQGMGVEQAVTEGALTRLRPVLM 983

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
            T++ A +  +PMA+    G  V    A  +  GI+ +
Sbjct: 984  TALVASLGFVPMAIATGTGAEVQRPLATVVIGGILSS 1020



 Score = 46.2 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 85/269 (31%), Gaps = 19/269 (7%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+        +   +L  + +G         +    V L          +R +     +
Sbjct: 252 EVIVGSAQGQPIRVRDLADVGLGRELRTGAATDNGREVVLGTVFMLIGENSRAVAQAVHE 311

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGA 696
              ++  S     + V       L+ K I  V       +A+ + I          AL  
Sbjct: 312 RMLVINKSLPPGVKAVTVYDRTNLVDKAIATVKKNLIEGAALVVAILFLFLGNLRAALIT 371

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT---- 752
              + L +  T        +  NL ++ A+    G  ++  VV+ +   + +        
Sbjct: 372 ALIIPLSMLFTFTGMVQMRVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQAAAG 429

Query: 753 ---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
              T     + +  +  E     ++  +   +  LP+    G    +    A+ +   ++
Sbjct: 430 RSLTRSERFEEVFAAAREARRPLLFGQLIIMVVYLPIFALTGVEGKMFHPMALTVVIALL 489

Query: 807 VAASSSI-FIAAPILLFIYDW-RAKNARI 833
            A   SI FI A I LF+ D    K  R+
Sbjct: 490 GAMLLSITFIPAAIALFMGDKVAEKENRL 518


>gi|254374982|ref|ZP_04990462.1| transporter AcrB/AcrD/AcrF family [Francisella novicida GA99-3548]
 gi|151572700|gb|EDN38354.1| transporter AcrB/AcrD/AcrF family [Francisella novicida GA99-3548]
 gi|332678902|gb|AEE88031.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Francisella cf. novicida Fx1]
          Length = 1037

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 62/524 (11%), Positives = 150/524 (28%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G+         +  + ++P                         
Sbjct: 9   RRPVLSLSISFMIIVVGVGS-----FFKLQVRQYPYIDSATIT---------VTTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +  F+    +      K             + IT+         ++  +V   +  
Sbjct: 55  NPATIQAFVTRPLEAAVGSSKGIDYMTSESALGTSTITVYVKLGYNTNDVLSEVVQNVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  D     +          ++          +  E S  I  +   ++       
Sbjct: 115 VLNQLPQDAYSPAIKLNPADNFPSLILAFTSK--TMNTSEISAYINSELTPKLLAEGGLS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    + +R+ +   T  +++      +    G      +L  +     
Sbjct: 173 EINVWGNMPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYT----- 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  T +   ++   +   +         +           
Sbjct: 228 ---------------LNPETSMSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A      + +    +         ++A         V   +      S   
Sbjct: 273 YFDGKNAVLAGAVVSPEENPLDVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V IV+F+ +   +  +V   +I L++I +  L+S++G ++ L ++  ++
Sbjct: 333 VLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +    F +   G     + +    +T ++    +   G
Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G     FA ++  ++LIS   A ++   M   ++  + M S
Sbjct: 453 GFTGQLFTEFAYSLAGAVLISGIVAYTLSPMMCSKVLNREMMSS 496



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 104/331 (31%), Gaps = 14/331 (4%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           +           I  N             +         V          +        +
Sbjct: 174 INVWGNMPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYTLNPETS 233

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                +    +   ++  +      + +E       S   FDG+   L      P ++  
Sbjct: 234 MSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSVYFDGKNAVLAGAVVSPEENPL 293

Query: 631 QT-----RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                  + L  +K  +   + +    N+ +       E++   +  VII +I M +++ 
Sbjct: 294 DVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDEVLHTLLEAVIIVSIVMFLFLG 353

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +  I  + L I  +    ++ G   NL  + A++  IG  V+D +VV + + 
Sbjct: 354 ---SLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMILAIGLVVDDAIVVLENI- 409

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +       K   E     +  ++   +   P+ + G   G +   FA  +A
Sbjct: 410 --YRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMGGFTGQLFTEFAYSLA 467

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++++   +  ++  +   + +    ++++
Sbjct: 468 GAVLISGIVAYTLSPMMCSKVLNREMMSSKL 498



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 93/295 (31%), Gaps = 14/295 (4%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                      S  ++     N  +  +    + + ++    L      L +L       Q
Sbjct: 732  YINYFFLKGYSFQVIPQLARNEMLTQEQLGNIYIRSDEMNKLFDSEVPLSALVTFKTEGQ 791

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                     +                + ++   + +  +     +        + +    
Sbjct: 792  PLTLNTFQQLNASTISAVMAPGITQGQAIEYVQSVVKSMLPEGFSYNFSGSARQYIENGN 851

Query: 670  IVGVIISAIAMLIYIWIR-----FKWYFALGAITTLILD-ITKTLGFFALFGIE---FNL 720
             + V  +   +LI++ +      F+    +     + +      L      G      N+
Sbjct: 852  TMMVAFAFAIVLIFLALSAQFESFRDSLVILVTIPMAISGALIPLYVGQYLGASWASLNI 911

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 ++TLIG      ++V +    N       ++  D I  S ++ L   + T  A  
Sbjct: 912  YTQLGLVTLIGLISKQGIMVVE--FANHLQKHNGMNKYDAIVTSSSQRLRPILMTVSAMV 969

Query: 781  ISVLPMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + V+P+    G   I      + ++ G+V+ A  S+F+   + ++I   ++K+ +
Sbjct: 970  VGVIPLVTSSGAGAISRNCIGVVISSGLVIGAIFSLFVLPVVYMYIASDKSKSVK 1024


>gi|148259111|ref|YP_001233238.1| acriflavin resistance protein [Acidiphilium cryptum JF-5]
 gi|146400792|gb|ABQ29319.1| acriflavin resistance protein [Acidiphilium cryptum JF-5]
          Length = 1020

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/550 (10%), Positives = 148/550 (26%), Gaps = 39/550 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ + I  +GL       L    +  +P                         
Sbjct: 10  RRPVLSIVVSAAILVLGL-----RALAGLPVLEYPKTENATIT---------ITTTYPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + + GF+    +   + +          +   + I +    +   +    ++   +Q 
Sbjct: 56  DPNTIAGFVTTPIEHAIAQVNGIDYMTSQSQTSTSTIKVFLILNYNPDKALTEIQAQIQS 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++  L     +++  +      +  +    + +  + R    Q+       
Sbjct: 116 VLNQLPSGTQQPQLKLQVGQQLDAMYIGFKSN--VLSPNQITDYLTRVVQPQLQSVPGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P++L     T   +       +             +D+     
Sbjct: 174 TAEILGAQNFAMRIWLEPAKLAAYGLTATNVYDALAGNDFISALGNTKGTMTQDTLTAST 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                     +      +   + G           +           
Sbjct: 234 SL--------------------HSAAAFRRLIVKQSGGAIVRLGDVARVKLGSDSYDAEV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    I         ++          +   +      S   
Sbjct: 274 AFDGKPGVYIGIQVAPAANLLSVISGVEKRFPEIQKQLPAGLDGAIVYNSAAFVNASIHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V++V+F  +   +   +   +I L++I T A + +LG ++ L ++  +V
Sbjct: 334 VVAALIEALLIVVLVVFAFLGTPRSVFIPVIAIPLSLIGTFAAMLMLGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I+V E +       ++   +     +   + I    +      V + F  
Sbjct: 394 LAIGLVVDDAIIVVENVNRHLDNGETKLHAAINAAAELANPIIAMTVVLAAVYVPIGFQS 453

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA T+  ++ +S   A+++   +   ++ +      D       F+     
Sbjct: 454 GLTGALFTEFAFTLVSAVTVSAIIALTLSPMLSSRLLHHIPRDGTDWEARLVHFIDKLFN 513

Query: 539 AIQFMRARFW 548
            +     R  
Sbjct: 514 TVHRRYMRML 523



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/245 (12%), Positives = 84/245 (34%), Gaps = 11/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            P+ L  + +    +    ++                      A   + ++  K +     
Sbjct: 775  PIPLGAIATIRNEVIPESVNHFQQLNAATIQGVAAPGVSTGEAVKVLQQIAAKDLPSGYE 834

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +           +    L   G   ++I      ++   R      L  + ++ + I   
Sbjct: 835  VDYGGPMRQFIQQQGGFLATFGFAVIVIFLALAALFNSFRD----PLIILVSVPMAIVGA 890

Query: 708  LGFFAL-FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L F  L FG+  N+     ++TL+G      +++ +   +        ++ R+ I+ ++ 
Sbjct: 891  LIFIYLGFGLSLNIYTEVGLVTLMGLISKHGILIVEVANE---AQLAGMTKREAIEHAVG 947

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + T+ A  + VLP+ +  G+      +  + +A G+ +    ++F+   + + +
Sbjct: 948  IRLRPILMTTAAMVLGVLPLIIASGAGAAARFNMGMVIAAGLSIGTLFTLFVLPAVYMVV 1007

Query: 824  YDWRA 828
                 
Sbjct: 1008 GQKHR 1012



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/237 (11%), Positives = 76/237 (32%), Gaps = 11/237 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V          D           ++        + ++    +E    +I + +P 
Sbjct: 254 VRLGDVARVKLGSDSYDAEVAFDGKPGVYIGIQVAPAANLLSVISGVEKRFPEIQKQLPA 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                            I + +  +I + + +++ +             +  + L +  T
Sbjct: 314 GLDGAIVYNSAAFVNASIHEVVAALIEALLIVVLVVFAFLGTPRSVFIPVIAIPLSLIGT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   NL  + A++  IG  V+D ++V + +    +      +       +  E
Sbjct: 374 FAAMLMLGFSINLLTLLALVLAIGLVVDDAIIVVENVN---RHLDNGETKLHAAINAAAE 430

Query: 768 TLGRSVYTSMAAFISVL---PMAVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
                +  +M   ++ +        G  G++   FA  +   + V+A  ++ ++  +
Sbjct: 431 LANPII--AMTVVLAAVYVPIGFQSGLTGALFTEFAFTLVSAVTVSAIIALTLSPML 485


>gi|238793616|ref|ZP_04637239.1| Heavy metal efflux pump, CzcA family [Yersinia intermedia ATCC
           29909]
 gi|238727031|gb|EEQ18562.1| Heavy metal efflux pump, CzcA family [Yersinia intermedia ATCC
           29909]
          Length = 1029

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 61/530 (11%), Positives = 136/530 (25%), Gaps = 52/530 (9%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           +++   M+   G+       L Q+ LD  P       I           +         V
Sbjct: 2   VLLGAVMMAAWGIWS-----LQQTPLDALPDLSDTQVI---------IRVSYPGKAPQVV 47

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +          +                + + F D         +V  +L  V + L
Sbjct: 48  EDQVTYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFDDGTDPYWARSRVLEYLSQVQATL 107

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             + K +L    T                     +           ++    +  +    
Sbjct: 108 PAEAKASLGPDATGVGWVYEY-ALIDRTGKHSLADLRALQDWTLKFELKTVPNVSEVASV 166

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             ++ Q     DP R+R L  +  +++      N    G +  +            ++  
Sbjct: 167 GGMVRQYQVVLDPERMRALNLSHQQIASAITDSNQEGGGSVLEMGAAEYMVRASGYLKT- 225

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
                                    +     G              P        +    
Sbjct: 226 ------------------LDDFRNIVITAREGIPILLSDVATVRMGPEMRRGVAELNGEG 267

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   I   +   +   TI         ++         +           +        
Sbjct: 268 EVAGGIIVMRYGKNALETINGVKEKLQQIQRSLPAGVEIVPVYDRSHLITQAIDSLSFKL 327

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V ++  + + + +  LVA  ++ L ++    ++   G    + S+ GI + IG 
Sbjct: 328 LEEFLVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAIGA 387

Query: 427 AVDSNILVNERIRE----------------ENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
            VD+ I++ E + +                ++    S   +++     A          +
Sbjct: 388 MVDAAIVMIENMHKVLEQWRRDNPGKTPVSQDYWRISEQAAIE--VGPALFCSLLIITLS 445

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
            I    L    G      A T   ++ +S   AI++V  +M + IR K  
Sbjct: 446 FIPVFTLQAQEGRMFSPLAFTKTYAMAVSAGLAITLVPVLMGYFIRGKIP 495



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 88/263 (33%), Gaps = 16/263 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       V LS +     +     +  +N        V L+ +   S        + +
Sbjct: 772  PVVTAGGGQVALSELADIKVTEGPPMLKSENARLSDWVYVDLRGRDLKSAVTEMQQAVAQ 831

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +         +         + + +L     + + ++ + + + +++ F       A+  
Sbjct: 832  QVKLPEGVSLSWSGQFEYLERATAKLK----IVLPVTLMIIFVLLYVTFSSIRD-AALIM 886

Query: 700  LILDITKTLGFFALFGIEFNLTAVAA--VLTLIGYSVNDKVVVYDRMRKNMKLYT----- 752
              L      G + L+G+ +N +  AA   + L G +    V++   + + +K +      
Sbjct: 887  ATLPFALIGGVWLLYGLGYNFSVAAAVGFIALAGVAAEFGVIMVLYLNQAVKKHQQPGIA 946

Query: 753  -TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVA 808
             T+      I +     +     T       +LP+   GG    V+   A PM  G+V A
Sbjct: 947  MTASQMSAAIHEGAVLRVRPKAMTVATIMAGLLPIMWGGGTGAEVMQRIAAPMIGGMVSA 1006

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               S+ +   + + ++    +  
Sbjct: 1007 PLLSMLVIPAVYMLLHKKDRQQQ 1029



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/228 (15%), Positives = 78/228 (34%), Gaps = 9/228 (3%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 ++ ++Y          V E +++    +     I         I++ +      
Sbjct: 267 GEVAGGIIVMRYGKNALETINGVKEKLQQIQRSLPAGVEIVPVYDRSHLITQAIDSLSFK 326

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +    +  +I     F +  AL AI TL L I          G+  N+ ++  +   IG
Sbjct: 327 LLEEFLVVAVICSLFLFHFRSALVAIITLPLGILGAFIVMHYQGVNANIMSLGGIAIAIG 386

Query: 732 YSVNDKVVVYDRM--------RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             V+  +V+ + M        R N      S  +  + +++  E       + +   +S 
Sbjct: 387 AMVDAAIVMIENMHKVLEQWRRDNPGKTPVSQDYWRISEQAAIEVGPALFCSLLIITLSF 446

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +P+          F+ P+AF    A + S  +A  ++  +  +  +  
Sbjct: 447 IPVFTLQAQEGRMFS-PLAFTKTYAMAVSAGLAITLVPVLMGYFIRGK 493


>gi|227535811|ref|ZP_03965860.1| acriflavin resistance protein [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227244299|gb|EEI94314.1| acriflavin resistance protein [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 1058

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/546 (10%), Positives = 145/546 (26%), Gaps = 34/546 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  M+  + +     N + +  +D FP                   +        +++GF
Sbjct: 12  IAIMVVVLAIAFFSYNTIKKINVDIFPEVELPAMY---------VAMPYGGLSPAYMDGF 62

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +     ++  F+       F   Q    + L+F         A +V+  +      L   
Sbjct: 63  MANEFQKVLLFVSGVKNIDFKSVQGLTLMKLTFYPGTDMSQAAGEVSTSVSRAMGFLPPG 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               ++V      + +       D       E     + +                    
Sbjct: 123 AVPPMVVRFDGSSLPVGNLVFESD--QRSVNEIQTLALTKIRPMFVQIPGITSPAPFGGN 180

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           +  +    DP  ++    +   ++      +         +                   
Sbjct: 181 IRSIVINIDPEAMQANGLSPEDITVAITKNSLPSPAGNIRI------------------- 221

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
            G     A  N   K  + ++         R  +      +       +   ++      
Sbjct: 222 -GDENLMAPINSIAKGPQELLKTPVKTSDNRTVYVGDVARVEDGADQTVGYALVNGKRSV 280

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 KA  S    +E       ML+           E         S S       + 
Sbjct: 281 YLPIIKKADASTLDAVENLKAAIPMLKDQLPEDVKVSYEFDQSNYIERSLSNLIHEGILG 340

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A    +++ + +   +  ++   +I + ++  +  L L G T+ + +++G+ L IG+ VD
Sbjct: 341 AVFTGLMILLFLGDTRGAIIVVLTIPIAILAAVTTLYLFGQTINIMTLSGLALSIGILVD 400

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLFFFGGGAVR 486
              +  E I +     +    ++             I    +  L    ++         
Sbjct: 401 EATVTIENIHQHMEMGKPKQRAIIDALLEISIPKLLILLCILAVLTPAFIMTGIPKDMFM 460

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
             ++ +  +++ S   + + V  +  ++++ K     +      FF          MR  
Sbjct: 461 PLSMAVAFAMIASFLASQTFVPILANWMMKNKHNTEANTPRKRAFFDKFRVNYSFKMRKW 520

Query: 547 FWGVGI 552
                 
Sbjct: 521 STKAIP 526



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/276 (11%), Positives = 85/276 (30%), Gaps = 5/276 (1%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 +   + +  G        +    NR V +  V    +                 
Sbjct: 221 IGDENLMAPINSIAKGPQELLKTPVKTSDNRTVYVGDVARVEDGADQTVGYALVNGKRSV 280

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVII 675
           +L  ++     ++     L+     + + +P     + E          +   I  G++ 
Sbjct: 281 YLPIIKKADASTLDAVENLKAAIPMLKDQLPEDVKVSYEFDQSNYIERSLSNLIHEGILG 340

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           +    L+ +        A+  + T+ + I   +    LFG   N+  ++ +   IG  V+
Sbjct: 341 AVFTGLMILLFLGDTRGAIIVVLTIPIAILAAVTTLYLFGQTINIMTLSGLALSIGILVD 400

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           +  V  + +    +        +  I  ++ E     +   +     + P  +  G    
Sbjct: 401 EATVTIENIH---QHMEMGKPKQRAIIDALLEISIPKLLILLCILAVLTPAFIMTGIP-K 456

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +P++  +  A  +S   +   +  + +W  KN 
Sbjct: 457 DMFMPLSMAVAFAMIASFLASQTFVPILANWMMKNK 492


>gi|52842348|ref|YP_096147.1| chemiosmotic efflux system protein A (CzcA) [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|19880983|gb|AAM00612.1| chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila]
 gi|52629459|gb|AAU28200.1| chemiosmotic efflux system protein A (CzcA) [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 1066

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 74/510 (14%), Positives = 149/510 (29%), Gaps = 49/510 (9%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----VNGFLQMYSDELRSFLK 82
           L Q  +D FP   P               +V++          V   +    +   +   
Sbjct: 31  LKQMPVDVFPEFAPP-------------QVVVQTQAPGMATQDVETLITYPLESAINGTP 77

Query: 83  KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL-LVTTTEK 141
                        + IT+ F D          V   +Q V ++L       + L  T+  
Sbjct: 78  GVASVRSKTSVGLSTITVVFDDKTDIYLNRQLVNERIQQVINRLPPGVSSPVMLPVTSAV 137

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              +  +  +           S   IR R+  +G        +     + Q   + DP R
Sbjct: 138 GWLLKYALVSHTASPETLRTISDWTIRPRLLALG---GVASVVSLGGEVKQYQVQLDPKR 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           +     T  ++                         GNQ +    V   G     +T   
Sbjct: 195 MLAYGITVEEVRQALAT-------------------GNQNVPGAFVHQGGTEFVVSTIGR 235

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                     +     G                    D        +   +       + 
Sbjct: 236 IKTLDDIKKTLIVVRKGVPVTVNNVATVAFGGEIKRGDASFNAENAVIGTVSKIYGADTL 295

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
             T +    LA + ++    ++LN    R       +           A +V+ VLF+ +
Sbjct: 296 TTTRKVEQALADIKKSLPAGVELNTEVFRQANFIESAIHNLTRALIEGAVIVIAVLFLFL 355

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           +  +   +   S+ ++ I  + +L   G  +   ++ G+ + IG  VD  I+  E +   
Sbjct: 356 MNWRASFITFLSMPVSFIAGILVLHYFGFGINSMTLGGMAIAIGEVVDDGIITVENVVHR 415

Query: 442 NRKNQ------SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITM 492
            R N+           +        S++  + I   +  + +FF  G         AI  
Sbjct: 416 LRLNRLAEKPLPTIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGIPERIFSPLAIAY 475

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             S++ S+  +I++V A+   ++  K  K+
Sbjct: 476 IASVIGSLVVSITMVPALCYLLLVRKTEKN 505



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/261 (15%), Positives = 87/261 (33%), Gaps = 10/261 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V    PV ++ V +     +I                  +    D++  TR +E   
Sbjct: 246 LIVVRKGVPVTVNNVATVAFGGEIKRGDASFNAENAVIGTVSKIYGADTLTTTRKVEQAL 305

Query: 640 KKITEIVPLSTIQNTEIV-GPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAI 697
             I + +P     NTE+          I      +I  + I + +       W  +    
Sbjct: 306 ADIKKSLPAGVELNTEVFRQANFIESAIHNLTRALIEGAVIVIAVLFLFLMNWRASFITF 365

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTT 753
            ++ +     +     FG   N   +  +   IG  V+D ++    V  R+R N +L   
Sbjct: 366 LSMPVSFIAGILVLHYFGFGINSMTLGGMAIAIGEVVDDGIITVENVVHRLRLN-RLAEK 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAAS 810
            +   +++  ++ E     VY ++   +  LP+    G     F   AI     ++ +  
Sbjct: 425 PLPTIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGIPERIFSPLAIAYIASVIGSLV 484

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            SI +   +   +   + +  
Sbjct: 485 VSITMVPALCYLLLVRKTEKN 505



 Score = 40.8 bits (93), Expect = 1.0,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 89/256 (34%), Gaps = 10/256 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            + A+   +    +  L ++    +  Q F   +  + R+     +   +     + + + 
Sbjct: 808  IDAHGAANNQETKIPLRAVADIQLEPQPFAINRENVQRVLVIGFNVQGKDLGSVIQEVQH 867

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW--YFALGAITTL 700
                 +S      +          +   V V+  A+A+ I + +  K    F    +   
Sbjct: 868  QIKEKISLPGGYFVQYGGQFESQQQASRVIVLFGALAIFIMLVLLHKAFGTFWEALLVMF 927

Query: 701  ILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             L +    G  +LF    + ++ A+   +TL G +  + +++       ++         
Sbjct: 928  NLPLALIGGVVSLFLASGDMSVAAMIGFITLFGIAARNGIILVSHYN-QLRSLGRGR--E 984

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFI 815
             ++ +   + L   + T+  A ++++P+      G  +    A  +  G++ +   ++F+
Sbjct: 985  QVVIQGTLDRLVPVLMTAATAALALIPLLWGSPAGKELQRPLAQVLLGGLLTSTVLNMFV 1044

Query: 816  AAPILLFIYDWRAKNA 831
               +      W  K  
Sbjct: 1045 VPTVYNAFEIWHEKRK 1060


>gi|294828415|ref|NP_714051.2| acriflavine resistance protein [Leptospira interrogans serovar Lai
           str. 56601]
 gi|293386269|gb|AAN51069.2| acriflavine resistance protein [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 1037

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 60/641 (9%), Positives = 173/641 (26%), Gaps = 49/641 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  ++ +    I   G++  +         D FP+   K  +                 
Sbjct: 10  QNRLFMYLGMVFIFLSGVVSLI-----GLRRDAFPNVDLKQMV---------ISTKFPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR-FKENIADKVTLFLQ 120
               V   +    +E    +          R   + I +  +      E + +++   + 
Sbjct: 56  SPADVELRVTYPIEEKLKEIDGIDEIRSFSRNSVSDIDVRVSLEEKDPEKVLNEIRRAVD 115

Query: 121 GVNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
              ++L     +   +         I+       +        +  + R    ++   + 
Sbjct: 116 NAMAELPAQVTEKPKMTERKSGSFPILEFSIFGGKDEIELHTTAEFVER----ELEKIQG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +     +   +     + ++L+Q       +       N +            D    
Sbjct: 172 VARVDVFGKRDREWHILVNANKLKQYSLDLNDIINTIRNRNINLPAGSVDSETAFD---- 227

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                  + I G               +     +                +         
Sbjct: 228 -------LRIDGE---------FKNPSEIGKIPTRTNEIFSTVKLEDIARVEDTFEYPRF 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +             K +       +        L           V            
Sbjct: 272 LAIANGKQGLILSVIKKERSDAIEVADNVHKRLNELSKTYPSGMKTFVLNDEAKRTKNRL 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           ++      I   +V  +LF+ + +     +   S+  ++++T ++L     +  + S+ G
Sbjct: 332 NVVSSNALIGFTIVFGILFLFLDFRTAT-LTSLSLPFSMLMTFSVLPFFDVSFNMISMMG 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +++ +G+ VD++I+++E I     +      +   G       IF S +T + A + + F
Sbjct: 391 LIISLGMLVDNSIVISENIYTYLAEKNDSVTASLRGTVEMIVPIFGSYLTTVTAFLPMLF 450

Query: 480 FGGGAVRGFA---ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   +      + + +++  S+  +   + A +    +      I      +   I  
Sbjct: 451 MTGIMGKFIWEIPLVVIVALTASLIESFLFLPARIAAFAKTPNQMKIKSKFRLKMDSIFH 510

Query: 537 CIAIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            I   F +      R      +++  +          +++ +  K  I++ ++       
Sbjct: 511 SIETNFFKLVSFNIRHKKSSFAVILLLVFGSCGALSQMDFVLFPKEDIEIIMIKAEFPPT 570

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           S +    E ++  +   Q    E+      +     +    
Sbjct: 571 SRIFQTREKMKYMESIVQKIPKEELVSYSTKIGVQQTDPDD 611



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 72/244 (29%), Gaps = 9/244 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +    N       +          +             + L     +      V + V K
Sbjct: 243 IPTRTNEIFSTVKLEDIARVEDTFEYPRFLAIANGKQGLILSVIKKERSDAIEVADNVHK 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIWIRFKWYFALGAI 697
           ++ E+           V    ++    +  V     +I    +   +++   +  A    
Sbjct: 303 RLNELSKTYPSGMKTFVLNDEAKRTKNRLNVVSSNALIGFTIVFGILFLFLDFRTATLTS 362

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            +L   +  T      F + FN+ ++  ++  +G  V++ +V+ + +   +     S++ 
Sbjct: 363 LSLPFSMLMTFSVLPFFDVSFNMISMMGLIISLGMLVDNSIVISENIYTYLAEKNDSVT- 421

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIF 814
                +   E +     + +    + LPM    G +   I    + +   +  +   S  
Sbjct: 422 --ASLRGTVEMIVPIFGSYLTTVTAFLPMLFMTGIMGKFIWEIPLVVIVALTASLIESFL 479

Query: 815 IAAP 818
               
Sbjct: 480 FLPA 483



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/134 (16%), Positives = 50/134 (37%), Gaps = 9/134 (6%)

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I   +G F L G   +  A+  ++ L G  VN  +V+ D +  +     +  S  D++ +
Sbjct: 903  IGIVIG-FPLSGKSISFLAMIGIIGLAGVLVNASIVLVDCI--DSIRKDSKASMDDILIE 959

Query: 764  SINETLGRSVYTSMAAFISVLP-MAVWGG--SVIGSFAIPMAFGIVVAASSSIF---IAA 817
            +        + T++     +LP     GG   V+    + + +G+      S+    +  
Sbjct: 960  ASQRRFRPILLTTLTTVAGLLPTAYSLGGSDPVLIPMTLALGWGLGFGTLGSLLYVPVTL 1019

Query: 818  PILLFIYDWRAKNA 831
             +   +     +  
Sbjct: 1020 SVFNDLTTRFKEKR 1033


>gi|218128756|ref|ZP_03457560.1| hypothetical protein BACEGG_00328 [Bacteroides eggerthii DSM 20697]
 gi|217988984|gb|EEC55300.1| hypothetical protein BACEGG_00328 [Bacteroides eggerthii DSM 20697]
          Length = 1047

 Score =  125 bits (312), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 77/620 (12%), Positives = 180/620 (29%), Gaps = 25/620 (4%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWETDVYLARQIVSEKLAVV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L  +  K  L   +     +++     D      ++           ++  +    Q
Sbjct: 118 SESLPSNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +   + DP R+R    T  ++       N +  G       +    GN+Y+
Sbjct: 176 VAVLGGDIKEYQIQLDPERMRHYGVTLTEVMNATREMNLNANGG------VLYEYGNEYI 229

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V   +    +     T              +          ++    IG  L  +     
Sbjct: 230 VRGVISTDRVEQLAKTTVKLQGGDTSSASPASMPDVPVLLEDIADVRIGAKLPKLGTASE 289

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +   +    A  +   T +    L  + +     +K++    R       S    
Sbjct: 290 RGKPAVLLTVTKQPATSTLELTDKLETSLKDLQKNLPPDVKVSTDIFRQSRFIESSIGNV 349

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +       V+IVLF+ +   +  +++  ++ L++I +L  L  +G T+   S+ G+ +
Sbjct: 350 QKSLFEGGIFVVIVLFLFLANVRTTVISLVTLPLSLIASLLALHYMGFTINTMSLGGMAI 409

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFC--------SLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +  R+N+             +          I +S +  +++ 
Sbjct: 410 AIGSLVDDAIVDVENVYKRLRENRMKPQEERRPILEVVFNASKEVRMPILNSTLIIVVSF 469

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LFF     G  +    I   +++  S   A+++   +  +++  +K+K    +     
Sbjct: 470 VPLFFLSGMEGRMLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKIKDEKRSTGDSP 529

Query: 532 FLIPDCIA------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                               +    G   LF I   C             +G   + + +
Sbjct: 530 VARKMKEWYGAALTFVLGHKKSVLGGTIGLFVIALACFFTLGRSFLPPFNEGSFTINISS 589

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              + L          +   ++            R +            +E   +     
Sbjct: 590 LPGISLEESDKIGHRAEELLLTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRS 649

Query: 646 VPLSTIQNTEIVGPKISREL 665
                    E +G  +   +
Sbjct: 650 RSELVADVREKLGTIVGANV 669



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 78/221 (35%), Gaps = 12/221 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +T + ++ K    ++   + I             + +    G I   I +
Sbjct: 305 TSTLELTDKLETSLKDLQKNLPPDVKVSTDIFRQSRFIESSIGNVQKSLFEGGIFVVIVL 364

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++         + ++ TL L +  +L      G   N  ++  +   IG  V+D +V 
Sbjct: 365 FLFLA---NVRTTVISLVTLPLSLIASLLALHYMGFTINTMSLGGMAIAIGSLVDDAIVD 421

Query: 740 ---VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
              VY R+R+N MK         +++  +  E     + +++   +S +P+    G    
Sbjct: 422 VENVYKRLRENRMKPQEERRPILEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGR 481

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
           ++    I     +  +   ++ +   +    +   + K+ +
Sbjct: 482 MLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKIKDEK 522



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 24/166 (14%), Positives = 71/166 (42%), Gaps = 11/166 (6%)

Query: 671  VGVIISAIAMLIYIWIRFKWYFAL--GAITTLILDITKTLGFFALF--GIEFNLTAVAAV 726
            + +      ++I++ +  ++  ++   AI  + L +    G FAL     E ++ A+   
Sbjct: 881  LALTSFMSVVVIFLLLYHEFR-SVKESAIILINLPLALIGGVFALLITTGEISIPAIIGF 939

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            ++L G +  + +++      N           D + +   + L   + T++++ ++++P+
Sbjct: 940  ISLFGIATRNGMLLISHY--NHLQKEEGYGVYDSVIRGSLDRLNPILMTALSSALALIPL 997

Query: 787  AVWGG----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            A+ G      +    A  +  G++ +   + FI   + L ++  + 
Sbjct: 998  ALSGDLPGNEIQSPMAKVILGGLLTSTFLNGFIIPIVYLMMHGKKK 1043


>gi|320660137|gb|EFX27664.1| Cation efflux system protein cusA [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 1047

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 64/599 (10%), Positives = 152/599 (25%), Gaps = 43/599 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++                         + +   E G   +       +  P        
Sbjct: 236 YLQT------------------LDGFNHIVLKASENGVPVYLRDVAKILVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVVGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITNASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   AI ++  +M + IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWIRGKIPPESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +   + ++ +      + ++ L  +  +  L   G  +      G  L + + 
Sbjct: 518 NRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 763  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRK 1047


>gi|299134107|ref|ZP_07027300.1| heavy metal efflux pump, CzcA family [Afipia sp. 1NLS2]
 gi|298590854|gb|EFI51056.1| heavy metal efflux pump, CzcA family [Afipia sp. 1NLS2]
          Length = 1041

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 78/668 (11%), Positives = 179/668 (26%), Gaps = 42/668 (6%)

Query: 12  SMICCIGLLIALPNFLPQ---SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            ++   G   A    +       LD  P       I          +          V  
Sbjct: 13  LLLVLFGTGFAAAAGIYALAHLPLDAIPDLSDTQVI---------VYTEYPGQAPQVVED 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +          + K  +         + + + F D         +V  FL G  S+L  
Sbjct: 64  QVTYPLATAMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDIYWARSRVLEFLNGAASRLPA 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                +    T            +     +  +            +  +E   +      
Sbjct: 124 GVTPAIGPDATGVGWVYQY---AVTSKELNLAQTRTIQDWNLKFALAKAEGVAEVASVGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            + Q     DP R+R L  +  K+       N    G    +         +  ++   +
Sbjct: 181 FVKQYNVVLDPQRMRDLGISIQKVRDAIRASNADVGGRTVELSEFEYVIRGRGYLKSIDD 240

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +                      +   + G     +        P        +     +
Sbjct: 241 LG-------------------DIVLKTDKGTPVLLKNVARVELGPDERRGITELNGEGEV 281

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +  ++    IE        +          +           + +  K T   
Sbjct: 282 ASGIVLQRFGMNALDVIENVKKRFKEIATSLPKSVEIVPVYDRSNLIYAAIATLKHTLME 341

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + +V +V  + +L+ +  LVA   + + V++    + LLG    + S+ GI + IG  V
Sbjct: 342 ESLVVALVCIVFLLHVRSALVAIVMLPVGVLMAFGAMKLLGIGSNIMSLGGIAIAIGAMV 401

Query: 429 DSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           D+ I++ E   +        +     L    S     +F S +   ++ + +F      G
Sbjct: 402 DAAIVMIENAHKHLERAEPGKPRVAILIDAASEVGPALFFSLLIITVSFMPIFTLESQEG 461

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   ++  +   ++++V A+M+  +R + +           FLI     I  
Sbjct: 462 RLFGPLAFTKTFAMAAAALLSVTLVPALMVLFVRGRIISE--HKNPINRFLIWVYRPIIN 519

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
              R     + +  ++  + +     L             +     +    V    E +Q
Sbjct: 520 AVLRAKAFVVLLALAVLVVTIWPARQLGTEFMPNLNEGTLLYMPTTLPGISVTKAAELMQ 579

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
             D   ++F    +   +       +      +      +            + +  ++ 
Sbjct: 580 TQDRIIKSFSEVASVFGKAGRASTSTDPAPTEMFETIINLKPKEQWRPGLTIDGLIAEMD 639

Query: 663 RELIRKGI 670
           + L   G+
Sbjct: 640 KALQFPGV 647



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 64/159 (40%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++++ + ++  + +R     AL AI  L + +    G   L GI  N+ ++  +   IG
Sbjct: 343 SLVVALVCIVFLLHVR----SALVAIVMLPVGVLMAFGAMKLLGIGSNIMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+  +V+ +   K+++          ++  + +E      ++ +   +S +P+     
Sbjct: 399 AMVDAAIVMIENAHKHLERAEPGKPRVAILIDAASEVGPALFFSLLIITVSFMPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVLFVRGR 497



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 51/148 (34%), Gaps = 13/148 (8%)

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---------DRMR-K 746
            + +L   +   L      G   ++      + L G +    VV+           R+R  
Sbjct: 891  MLSLPFSLVGGLWLMWWLGFNLSVAVAVGFIALAGVAAETGVVMLIYLNHALAEMRVRCA 950

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
            +       I  R+ I +   E +   + T +A    +LP+      G  ++   A+PM  
Sbjct: 951  SEGRALNLIDLREAIMEGAVERVRPKMMTVVAIMAGLLPIMWSTGTGSEIMQRIAVPMIG 1010

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++ +   ++ +   I      +R    
Sbjct: 1011 GMISSTLLTLIVIPAIFGLAKGFRLPPG 1038


>gi|152982939|ref|YP_001353459.1| CzcA family cobalt/zinc/cadmium efflux transporter permease
           [Janthinobacterium sp. Marseille]
 gi|151283016|gb|ABR91426.1| cobalt/zinc/cadmium efflux RND transporter, permease protein, CzcA
           family [Janthinobacterium sp. Marseille]
          Length = 1074

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 70/686 (10%), Positives = 176/686 (25%), Gaps = 67/686 (9%)

Query: 5   PWLVILYSM-ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            WLV+L ++ I   G+         +  +D  P                   + +     
Sbjct: 13  RWLVMLMTLGIAAFGIYS-----YQKLPIDAVPDITN-------------VQVQINTSAP 54

Query: 64  DFV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
            +        +    + + + L K        R   +++T+ F +          V   +
Sbjct: 55  GYSPLESEQRITYPIETVMAGLPKLEQTRSISRYGLSQVTVIFKEGTDIYFARQLVNERI 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRIDQ 173
           Q    KL       L   +T      + +          D       +           Q
Sbjct: 115 QEAKDKLPPGVVPALGPISTGLGEIYMWTVEAEEGALKPDGKPYTPTDLKEIQDWIIKPQ 174

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       +         +      P +L     + A +       NN+        R  
Sbjct: 175 LRNVPGVTEINTIGGNAKEFQVAPYPGKLMSYGLSLADLVTALERNNNNVGAGYIEKRGE 234

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           +        V D  +IS I +    +                              +   
Sbjct: 235 QYLIRAPGQVTDLNDISNIVIGTKQS--------------------IPVRIKDVAEVMLG 274

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +        +  I           +     E        +R       +         
Sbjct: 275 SQLRTGAATENSREIVLGTVFMLIGENSRSVAEAVDKKMEEIRRTLPEGVVAATVYDRTV 334

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +  K      A LV+ +LF+ +   +  ++    I L ++ T   +     +  
Sbjct: 335 LVDKAIATVKKNLMEGALLVIAILFLFLGNIRAAIITAMVIPLAMLFTFTGMVNNKVSAN 394

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTI 463
           L S+  +  GI   +D  +++ E                      F  +      A   +
Sbjct: 395 LMSLGALDFGII--IDGAVVIVENCIRRLSHAQAHAGRSLTRNERFHEVFEASQEARRPL 452

Query: 464 FDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               +  ++  + +F      G      A T+ +++  +M  +++ + A +  +I  K  
Sbjct: 453 IFGQLIIMVVYLPIFALSGVEGKMFHPMAFTVVVALFGAMILSLTFIPAAVALLIGDKVS 512

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +  +             +     R       + +   +C + L            +G I 
Sbjct: 513 EKENRLIGWSKRRYEPMLDWVMDRKPLVLTTVGVAVVLCGLLLTRMGSEFIPSLNEGDIA 572

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L       +  + +  ++E  +  + + + F   K    ++      +      +     
Sbjct: 573 LQ---AMRIPGTSLTQSIEMQKELERNLRTFPEVKRVFAKIGTAEIATDPMPPNVADTFI 629

Query: 641 KITEIVPLSTIQNTEIVGPKISRELI 666
            +       + + T+       ++++
Sbjct: 630 ILKPESEWPSPKRTKEELVTAMQKVV 655



 Score = 41.6 bits (95), Expect = 0.56,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 16/172 (9%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + I          A+  IT +++ +     F  +   + +   ++      G  +
Sbjct: 350 GALLVIAILFLFLGNIRAAI--ITAMVIPLAMLFTFTGMVNNKVSANLMSLGALDFGIII 407

Query: 735 NDKVVVYDR-MRKNM-------KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  VV+ +  +R+         +  T +  F ++ + S  E     ++  +   +  LP+
Sbjct: 408 DGAVVIVENCIRRLSHAQAHAGRSLTRNERFHEVFEAS-QEARRPLIFGQLIIMVVYLPI 466

Query: 787 AVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
               G    +    A  +   +  A   S+ FI A + L I D    K  R+
Sbjct: 467 FALSGVEGKMFHPMAFTVVVALFGAMILSLTFIPAAVALLIGDKVSEKENRL 518



 Score = 38.5 bits (87), Expect = 4.4,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 77/217 (35%), Gaps = 7/217 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +  L +     Q        LV +          + V++  KK    +   S    +  
Sbjct: 811  EVADLNLAPGPNQVSRENGKRLVIVTANVRGRDIGSFVMDAQKKIQETVKIPSGNWISWG 870

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               +      ++  + V I+ + + + +++ F      +   T +   +T  +    L  
Sbjct: 871  GTFEQLESATKRLQIVVPIALLLVFLLLFVMFGNAKDGMLVFTGVPFALTGGIAALWLRD 930

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            I  +++A    + L G +V + +V+   +R    L     +    I +     L   + T
Sbjct: 931  IPLSISAGIGFIALSGVAVLNGLVMISFIR---SLREEGRTLDVAIHEGALTRLRPVLMT 987

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
            ++ A +  +PMA+    G  V    A  +  GI+ + 
Sbjct: 988  ALVASLGFVPMALATGTGAEVQRPLATVVIGGIISST 1024


>gi|88705778|ref|ZP_01103487.1| acriflavin resistance plasma membrane protein [Congregibacter
           litoralis KT71]
 gi|88699849|gb|EAQ96959.1| acriflavin resistance plasma membrane protein [Congregibacter
           litoralis KT71]
          Length = 1063

 Score =  124 bits (311), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 66/567 (11%), Positives = 159/567 (28%), Gaps = 41/567 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            +   ++L  ++   GL+           +   P  +      +G+   G S        
Sbjct: 11  RSRSTLMLMGVLVLAGLIS-----RSALPIANDPHIVLP-YFYIGIPHEGIS-------- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            +     L    +     ++       +  +    + + F  S         V   +   
Sbjct: 57  PEDSERLLIQPMEIELRKIEGLKEISATASEGYATLFVEFEPSVDLNVALTDVREAVDRG 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S++    ++ ++      +  ++             I ++   +R   D I    S + 
Sbjct: 117 KSEIPTTAEEPVVRELDVDDFPLIQINLLSRGASERQIYETALSLR---DDIESIPSVLT 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L    DP  L     ++  +       N             R S     +
Sbjct: 174 AEIRGDREEVLEVIIDPQALEAYQISSESLVSILQRNNRLIPAGSVDTGNGRFSVKVPSV 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           VE   +I                    +D+     G          +I +          
Sbjct: 234 VESASDI--------------------MDLPVQVSGDSVVTLSDVASIRRTFKDRTSHAR 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +   T E    +     AG     L +  +          +  
Sbjct: 274 FNGVETMTVEVKKRVDANVIDTSEAVLKVVEEATAGLPSTILVVPSQNTADFARTQVTEL 333

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +G       LV++++   + +   G++    I  +++ ++ ++  LG T     + G++L
Sbjct: 334 QGNIMTALALVMVIVVAAMGFR-SGVIVGLGIPFSLLFSIIIIYQLGYTFNFMVMFGMLL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           G+G+ +D  I+V E    +  +      +      R +  +  S  T L A + L F+  
Sbjct: 393 GLGMLIDGAIVVTEYADRKMSEGLDHKEAYSEAVKRMFWPVTASTATTLAAFLPLIFWPG 452

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G  +R   +T+   +  S+  A+     +     +     + +   +           
Sbjct: 453 ISGQFMRYLPVTVFTVLSGSLVYALLFGPVLGSIFGKPTVHSAAEQATMEELDHGDPTQL 512

Query: 540 IQFMRARFWGVGISILFSICSICLLFT 566
                A    +       + ++  +FT
Sbjct: 513 KTITGAYARMMAWITGHPLTTVGTIFT 539



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 72/216 (33%), Gaps = 11/216 (5%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQP----GDSVAQTRVL 635
            + V  +  V LS V S   + +      +    E   +   +         S A  +V+
Sbjct: 244 PVQVSGDSVVTLSDVASIRRTFKDRTSHARFNGVETMTVEVKKRVDANVIDTSEAVLKVV 303

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           E     +   + +   QNT         EL    +  + +  + ++  +  R      LG
Sbjct: 304 EEATAGLPSTILVVPSQNTADFARTQVTELQGNIMTALALVMVIVVAAMGFRSGVIVGLG 363

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
              +L+  I          G  FN   +  +L  +G  ++  +VV +      +  +  +
Sbjct: 364 IPFSLLFSIIII----YQLGYTFNFMVMFGMLLGLGMLIDGAIVVTE---YADRKMSEGL 416

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             ++   +++         ++     + LP+  W G
Sbjct: 417 DHKEAYSEAVKRMFWPVTASTATTLAAFLPLIFWPG 452



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 60/143 (41%), Gaps = 18/143 (12%)

Query: 697  ITTLILDITKTLGFFALFGIEFN-LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +  +I+     L    + G  F+ +     V+ L G  VN+ +V+ D     ++     +
Sbjct: 896  LLAVIMSTAGVLLGLIITGNPFSAILTGVGVVALAGIVVNNNIVLIDTFN-VVRSENPEL 954

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMA-----------VWGGSVIGSF----AIP 800
            S +D I ++  + L   + T++     +LP+A           +  G  + +F    +  
Sbjct: 955  SVQDAIVRAAAQRLRPVMLTTVTTVFGLLPLACDLSIDIVNRSITAGGQMATFWGPLSQA 1014

Query: 801  MAFGIVVAASSSIFIAAPILLFI 823
            + FG+  A   ++ IA P LL +
Sbjct: 1015 IVFGLSFATVLTL-IATPALLAL 1036


>gi|118498174|ref|YP_899224.1| RND efflux transporter [Francisella tularensis subsp. novicida
           U112]
 gi|194324347|ref|ZP_03058120.1| RND transporter, HAE1 and HME families, permease protein
           [Francisella tularensis subsp. novicida FTE]
 gi|118424080|gb|ABK90470.1| RND efflux transporter, AcrB/AcrD/AcrF family [Francisella novicida
           U112]
 gi|194321412|gb|EDX18897.1| RND transporter, HAE1 and HME families, permease protein
           [Francisella tularensis subsp. novicida FTE]
          Length = 1037

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/524 (11%), Positives = 150/524 (28%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G+         +  + ++P                         
Sbjct: 9   RRPVLSLSISFMIIVVGVGS-----FFKLQVRQYPYIDSATIT---------VTTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +  F+    +      K             + IT+         ++  +V   +  
Sbjct: 55  NPATIQAFVTRPLEAAVGSSKGIDYMTSESALGTSTITVYVKLGYNTNDVLSEVVQNVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L  D     +          ++          +  E S  I  +   ++       
Sbjct: 115 VLNQLPQDAYSPAIKLNPADNFPSLILAFTSK--TMNTSEISAYINSELTPKLLAEGGLS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    + +R+ +   T  +++      +    G      +L  +     
Sbjct: 173 EINVWGNMPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYT----- 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  T +   ++   +   +         +           
Sbjct: 228 ---------------LNPETSMSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A      + +    +         ++A         V   +      S   
Sbjct: 273 YFDGKNAVLAGAVVSPEENPLDVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V IV+F+ +   +  +V   +I L++I +  L+S++G ++ L ++  ++
Sbjct: 333 VLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +    F +   G     + +    +T ++    +   G
Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G     FA ++  ++LIS   A ++   M   ++  + M S
Sbjct: 453 GFTGQLFTEFAYSLAGAVLISGIVAYTLSPMMCSKVLNREMMSS 496



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 104/331 (31%), Gaps = 14/331 (4%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           +           I  N             +         V          +        +
Sbjct: 174 INVWGNMPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYTLNPETS 233

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                +    +   ++  +      + +E       S   FDG+   L      P ++  
Sbjct: 234 MSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSVYFDGKNAVLAGAVVSPEENPL 293

Query: 631 QT-----RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                  + L  +K  +   + +    N+ +       E++   +  VII +I M +++ 
Sbjct: 294 DVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDEVLHTLLEAVIIVSIVMFLFLG 353

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +  I  + L I  +    ++ G   NL  + A++  IG  V+D +VV + + 
Sbjct: 354 ---SLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMILAIGLVVDDAIVVLENI- 409

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +       K   E     +  ++   +   P+ + G   G +   FA  +A
Sbjct: 410 --YRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMGGFTGQLFTEFAYSLA 467

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++++   +  ++  +   + +    ++++
Sbjct: 468 GAVLISGIVAYTLSPMMCSKVLNREMMSSKL 498



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 93/295 (31%), Gaps = 14/295 (4%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                      S  ++     N  +  +    + + ++    L      L +L       Q
Sbjct: 732  YINYFFLKGYSFQVIPQLARNEMLTQEQLGNIYIRSDEMNKLFDSEVPLSALVTFKTEGQ 791

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                     +                + ++   + +  +     +        + +    
Sbjct: 792  PLTLNTFQQLNASTISAVMAPGITQGQAIEYVQSVVKSMLPEGFSYNFSGSARQYIENGN 851

Query: 670  IVGVIISAIAMLIYIWIR-----FKWYFALGAITTLILD-ITKTLGFFALFGIE---FNL 720
             + V  +   +LI++ +      F+    +     + +      L      G      N+
Sbjct: 852  TMMVAFAFAIVLIFLALSAQFESFRDSLVILVTIPMAISGALIPLYVGQYLGASWASLNI 911

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 ++TLIG      ++V +    N       ++  D I  S ++ L   + T  A  
Sbjct: 912  YTQLGLVTLIGLISKQGIMVVE--FANHLQKHNGMNKYDAIITSSSQRLRPILMTVSAMV 969

Query: 781  ISVLPMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + V+P+    G   I      + ++ G+V+ A  S+F+   + ++I   ++K+ +
Sbjct: 970  VGVIPLVTSSGAGAISRNCIGVVISSGLVIGAIFSLFVLPVVYMYIASDKSKSVK 1024


>gi|241764118|ref|ZP_04762154.1| acriflavin resistance protein [Acidovorax delafieldii 2AN]
 gi|241366524|gb|EER61017.1| acriflavin resistance protein [Acidovorax delafieldii 2AN]
          Length = 1067

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/582 (12%), Positives = 167/582 (28%), Gaps = 38/582 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V++  +I   G+L  L     ++  D FP                 +      
Sbjct: 10  LRRPYTFVVMALLILIGGILTML-----RTPTDIFPEIRIPVI---------ATAWQYTG 55

Query: 61  DEDDFVNGFLQMYSDELRSF-LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              D + G +      + S  +        +       + + F           ++T   
Sbjct: 56  LPPDEMAGRITSPFQRILSASVNNIERIEANTYPGVGIVKIFFQPGVDVATANAQITAAS 115

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q    ++    +  +++      + IV    + + +     E     +      +     
Sbjct: 116 QVALRQMPAGIQPPVILNYNAATVPIVQLALSGEGMTEQ--ELFDLGMNTVRTPLITVPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            +  L    +  Q+  +  P  L+    +   +S      N         +     +   
Sbjct: 174 AVIPLPYGGVQRQVQIDLKPEALQARGLSAQDVSAALAAHNVLTPIGTQKIDDREYTLQL 233

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                   EI                     ++    +     +     ++    A   +
Sbjct: 234 NSAPSAIAEIG--------------------ELPVKVVNGATIYLRDVADVRDGNAPQTN 273

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +                S    ++    +   +RA        +           + 
Sbjct: 274 IVHVDGNRSVLMTVLKSGSASTLAIVDGIRAMLDDMRAALPEALRVVPINDQSVFVRAAV 333

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   I   +  +++ + +   +  ++   SI L+++ ++  L+ LG T+ L ++ G
Sbjct: 334 QGVALEAVIAGTMTSLMILLFLGSWRSTVIIAISIPLSILGSIMALAALGQTMNLMTLGG 393

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L IG+ VD   +  E +     + + V  ++  G  +  +  F S +   IA V +FF
Sbjct: 394 LALAIGILVDDATVTIENVNWHLEQGKDVETAILDGARQIVAPAFVSLLCICIAFVPMFF 453

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G + R   + M LS++ +M  +  + R ++  + +Y          L           
Sbjct: 454 LDGVS-RFLFVPMALSVIFAMVCSFILSRTLVPTMAKYLLRPHAPHTDLHGNDEALPPSR 512

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              +R +         F      LL     N      G + +
Sbjct: 513 NPLVRFQRRFEARFERFRDGYRNLLQAALANRKRFLVGFVVV 554



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 57/162 (35%), Gaps = 4/162 (2%)

Query: 669 GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  VI   +  L+ +     W   +    ++ L I  ++   A  G   NL  +  +  
Sbjct: 337 ALEAVIAGTMTSLMILLFLGSWRSTVIIAISIPLSILGSIMALAALGQTMNLMTLGGLAL 396

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            IG  V+D  V  + +                I     + +  +  + +   I+ +PM  
Sbjct: 397 AIGILVDDATVTIENVN---WHLEQGKDVETAILDGARQIVAPAFVSLLCICIAFVPMFF 453

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             G     F +PMA  ++ A   S  ++  ++  +  +  + 
Sbjct: 454 LDGVSRFLF-VPMALSVIFAMVCSFILSRTLVPTMAKYLLRP 494



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 8/218 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP-KISRELIRKGIVG 672
                +V++     D        ++ K        +      +++G              G
Sbjct: 837  NIQPMVQIHAATQDRDLAAVAADIRKALADTAGDVPRGSTVQLMGQVDTMDRAFSGLFFG 896

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + + +   I + F  W      ++ L   +   +          ++ A+   +  +G
Sbjct: 897  LIGAIVLIYFLIVVNFQSWLDPAVIVSALSAALAGIIWMLFATDTTLSVPALTGAIMCMG 956

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + V+V    R+ +       +    ++          + T++A  I +LPMA+   
Sbjct: 957  VATANSVLVTSFARERLAEL--GDATAAALEAGFVR-FRPVLMTALAMIIGMLPMALGVG 1013

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             GG         +  G++ A  +++     +   ++  
Sbjct: 1014 EGGEQNAPLGRAVIGGLLFATVATLMFVPVLFSLVHGR 1051


>gi|120402584|ref|YP_952413.1| polyprenyl synthetase [Mycobacterium vanbaalenii PYR-1]
 gi|119955402|gb|ABM12407.1| Polyprenyl synthetase [Mycobacterium vanbaalenii PYR-1]
          Length = 1155

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 77/675 (11%), Positives = 173/675 (25%), Gaps = 83/675 (12%)

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             D           ++     G        T    VD +           +  ++     
Sbjct: 66  FQDPGSESARATRVLTETFGRGDMQLVFAVTDPAGVDSASARAAGLAIATLVGEDPAVAD 125

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            V        A     +       +    T +                         V  
Sbjct: 126 VVSTWTVAPEAAAALISADGRSGLVVAELTGDENTAPRIAQALVDEVATTVQPRHETVAV 185

Query: 355 DLGSDSIYKGTCAIVAGL------------VLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
             G  SI                         +VL  +        +      L ++ ++
Sbjct: 186 LAGGSSIVYSQINSQTLRDVLLMEAIAIPLTFLVLVWVFKGLLAAALPVAVGGLAIVASM 245

Query: 403 ALLSLLGATLTLPSIA---GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           ++L L+     +   A      LG+ LAVD  +L+  R R+E         +L      A
Sbjct: 246 SVLRLVAMWTDVSIFALNLTTALGLALAVDYTLLIVSRFRDEVAAGAPRDRALVTTMVTA 305

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-- 517
             T+  S +T  ++   +  F    ++ FA     ++ +    AI +  A++        
Sbjct: 306 GRTVLFSALTVALSMAAMLLFPMYFLKSFAYAGLATVALCAVAAIVVTPAVIALFGDRLD 365

Query: 518 ----KKMKSIDINPLSRFFLIPDCIAIQFMRARF----------------WGVGISILFS 557
               ++M         R   +    + +F+  R                   +G+S    
Sbjct: 366 AFDIRRMLRRTPAAEPRGEQMFWYRSTKFVMRRALPVGLAGTALLVSLGLPFLGVSWGLP 425

Query: 558 ICSICLLFTHGLNYGID------------------------FKGGIQLGVLANRPVDLSV 593
              +          G                           +   +    A+   D+S+
Sbjct: 426 DDRVLPSSATAHRVGDMLRTEFSDNSEAAVTVLVPDAEGLTPQDFERYAAEASTIEDVSM 485

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V +   +   G        G            G + A        +      +P    + 
Sbjct: 486 VSAPTGTFADGRRVGPPAGGAGVQGGIAYLTVGSTTASFSPESERQLDRLRALPGPGGRP 545

Query: 654 TEIVGPKISRELIRKGIVG---VIISAIAMLIYIWIRF---KWYFALGAITTLILDITKT 707
            ++ G         + I+    +++  IA++ ++ +          + A+    L +T  
Sbjct: 546 VQMTGIAQINRDSVESIMARLPIVLGIIAVITFVLLFLLTGSLVLPVKALVLNALSLTAA 605

Query: 708 LGFFALFGIEFNL--------------TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            G       + NL                V       G S++ +V +  R+R+       
Sbjct: 606 FGALVWIFQDGNLGALGTTPTGTLVVNMPVLLFCIAFGLSMDYEVFLLARIREFWLAGGR 665

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA-ASSS 812
                + +   +  T       ++   IS   +     S +  F + +   +++      
Sbjct: 666 R-DNDESVALGLAHTGRVVTAAALIMSISFGALIAAQVSFMRMFGLGLMLAVLIDATLVR 724

Query: 813 IFIAAPILLFIYDWR 827
           + +    +  +  W 
Sbjct: 725 MVLLPAFMHLMGRWN 739


>gi|289209477|ref|YP_003461543.1| acriflavin resistance protein [Thioalkalivibrio sp. K90mix]
 gi|288945108|gb|ADC72807.1| acriflavin resistance protein [Thioalkalivibrio sp. K90mix]
          Length = 1029

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 69/509 (13%), Positives = 150/509 (29%), Gaps = 46/509 (9%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----VNGFLQMYSDELRSFLKKEG 85
             +  FP   P               + +  +        V+  L    +E  + L    
Sbjct: 32  LPVQLFPDTDPPT-------------VTVITEYPGMAALDVDRELTRLLEEEFASLDGVT 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               S +   +   + F         A  V   +  +   L    ++  ++  +  +  I
Sbjct: 79  RISSSSQTGLSVARVEFDYGITSALAAVDVQNAVGRLRPDLPATIEEPQILEFSTADKPI 138

Query: 146 VLSQNNIDQVISHAI-EQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +      D +   AI EQ+   IR+R++ I                 +L    DP R   
Sbjct: 139 ITIALTSDTLALDAIREQADNAIRERLEWI---PGVAAIDVVGGHKRELHVALDPERTEA 195

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           L     ++       N    G    +  L         +  + +                
Sbjct: 196 LGIDMPQVLEALDDWNLMAPGGRVRIGELESVVRFDAPLRSEAD---------------- 239

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
                 +I     G  R        +                         +   +    
Sbjct: 240 ----AREIILVADGDTRVRLGDIARVRLEPGEPRSAYRHDGQAAIAVQVLRRDDANTVEV 295

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
                     LR  +  + + + ++ +V       +    T  I   L ++++ + +   
Sbjct: 296 AARVREALEPLRDAAPELNIVVADDDSV-FTEKVIADMTQTVMIAIALTMVIVLLFLADL 354

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE-NR 443
           +   +   SI    ++T  L+ L G  L + +++ ++L IGL VD  I++ E I    + 
Sbjct: 355 RQAGIIALSIPAAFLVTFGLMQLAGLDLNMVTMSALILAIGLLVDDGIVILENIHRHLDE 414

Query: 444 KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISM 500
           + Q    +   G    +       +T L   + L F G   G   R  A+T+  ++  S 
Sbjct: 415 EGQPPRQAAIQGVGEVFGAKLGGTLTTLGVLLPLTFMGGFVGELFRPLALTLAFALSASF 474

Query: 501 FTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             A++++  +  + +R     +      +
Sbjct: 475 VMAVTLIPLLATYWLRPATSTATPRWRET 503



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 87/239 (36%), Gaps = 8/239 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ VR      +               L R      +  A+ R      +     + + 
Sbjct: 257 DIARVRLEPGEPRSAYRHDGQAAIAVQVLRRDDANTVEVAARVREALEPLRDAAPELNIV 316

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              +  +   K+  ++ +  ++ + ++ + +L+++        A     ++      T G
Sbjct: 317 VADDDSVFTEKVIADMTQTVMIAIALTMVIVLLFLA---DLRQAGIIALSIPAAFLVTFG 373

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G++ N+  ++A++  IG  V+D +V+ + +     L       R    + + E  
Sbjct: 374 LMQLAGLDLNMVTMSALILAIGLLVDDGIVILENIH--RHLDEEGQPPRQAAIQGVGEVF 431

Query: 770 GRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           G  +  ++     +LP+   G   G +    A+ +AF +  +   ++ +   +  +   
Sbjct: 432 GAKLGGTLTTLGVLLPLTFMGGFVGELFRPLALTLAFALSASFVMAVTLIPLLATYWLR 490



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 57/143 (39%), Gaps = 8/143 (5%)

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
               +   +  +T + L     +    + G   ++ A+  ++ LIG  VN+ +++ D  R 
Sbjct: 881  FRSFAHPVIIMTAIPLQFIGVVAALLIAGKYVSMPALLGIILLIGIVVNNSIILLDLAR- 939

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
              +           + +++   +   + T+++    +LP+A+    G       A  +  
Sbjct: 940  --RRLAEGRDIYAAVTEAVETRMRPIMMTALSTIAGMLPLALEMAVGAERFSPIA-TVII 996

Query: 804  G-IVVAASSSIFIAAPILLFIYD 825
            G I+ A   ++ +   + + ++ 
Sbjct: 997  GGILAATVLTLVVIPALFVLLHR 1019


>gi|326402262|ref|YP_004282343.1| efflux system protein [Acidiphilium multivorum AIU301]
 gi|325049123|dbj|BAJ79461.1| efflux system protein [Acidiphilium multivorum AIU301]
          Length = 1020

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 55/550 (10%), Positives = 148/550 (26%), Gaps = 39/550 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++ + I  +GL       L    +  +P                         
Sbjct: 10  RRPVLSIVVSAAILVLGL-----RALAGLPVLEYPKTENATIT---------ITTTYPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + + GF+    +   + +          +   + I +    +   +    ++   +Q 
Sbjct: 56  DPNTIAGFVTTPIEHAIAQVNGIDYMTSQSQTSTSTIKVFLILNYNPDKALTEIQAQIQS 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V ++L    ++  L     +++  +      +  +    + +  + R    Q+       
Sbjct: 116 VLNQLPSGTQQPQLKLQVGQQLDAMYIGFKSN--VLSPNQITDYLTRVVQPQLQSVPGVQ 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +    +P++L     T   +       +             +D+     
Sbjct: 174 TAEILGAQNFAMRIWLEPAKLAAYGLTATNVYDALAGNDFISALGNTKGTMTQDTLTAST 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                     +      +   + G           +           
Sbjct: 234 SL--------------------HSAAAFRRLIVKQSGGAIVRLGDVARVKLGSDSYDAEV 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                             +    I         ++          +   +      S   
Sbjct: 274 AFDGKPGVYIGIQVAPAANLLSVISGVEKRFPEIQKQLPAGLDGAIVYNSAAFVNASIHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V++V+F  +   +   +   +I L++I T A + +LG ++ L ++  +V
Sbjct: 334 VVAALIEALLIVVLVVFAFLGTPRSVFIPVIAIPLSLIGTFAAMLMLGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
           L IGL VD  I+V E +       ++   +     +   + I    +      V + F  
Sbjct: 394 LAIGLVVDDAIIVVENVNRHLDNGETKLHAAINAAAELANPIIAMTVVLAAVYVPIGFQS 453

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA T+  ++ +S   A+++   +   ++ +      D       F+     
Sbjct: 454 GLTGALFTEFAFTLVSAVTVSAIIALTLSPMLSSRLLHHIPRDGTDWEARLVHFIDKLFN 513

Query: 539 AIQFMRARFW 548
            +     R  
Sbjct: 514 TVHRRYMRML 523



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/245 (12%), Positives = 84/245 (34%), Gaps = 11/245 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            P+ L  + +    +    ++                      A   + ++  K +     
Sbjct: 775  PIPLGAIATIRNEVIPESVNHFQQLNAATIQGVAAPGVSTGEAVKVLQQIAAKDLPSGYE 834

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +           +    +   G   ++I      ++   R      L  + ++ + I   
Sbjct: 835  VDYGGPMRQFIQQQGGFVATFGFAVIVIFLALAALFNSFRD----PLIILVSVPMAIVGA 890

Query: 708  LGFFAL-FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L F  L FG+  N+     ++TL+G      +++ +   +        ++ R+ I+ ++ 
Sbjct: 891  LIFIYLGFGLSLNIYTEVGLVTLMGLISKHGILIVEVANE---AQLAGMTKREAIEHAVG 947

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              L   + T+ A  + VLP+ +  G+      +  + +A G+ +    ++F+   + + +
Sbjct: 948  IRLRPILMTTAAMVLGVLPLIIASGAGAAARFNMGMVIAAGLSIGTLFTLFVLPAVYMVV 1007

Query: 824  YDWRA 828
                 
Sbjct: 1008 GQKHR 1012



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 75/235 (31%), Gaps = 7/235 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V          D           ++        + ++    +E    +I + +P 
Sbjct: 254 VRLGDVARVKLGSDSYDAEVAFDGKPGVYIGIQVAPAANLLSVISGVEKRFPEIQKQLPA 313

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKT 707
                            I + +  +I + + +++ +             +  + L +  T
Sbjct: 314 GLDGAIVYNSAAFVNASIHEVVAALIEALLIVVLVVFAFLGTPRSVFIPVIAIPLSLIGT 373

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                + G   NL  + A++  IG  V+D ++V + +    +      +       +  E
Sbjct: 374 FAAMLMLGFSINLLTLLALVLAIGLVVDDAIIVVENVN---RHLDNGETKLHAAINAAAE 430

Query: 768 TLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
                +  ++      +P+       G++   FA  +   + V+A  ++ ++  +
Sbjct: 431 LANPIIAMTVVLAAVYVPIGFQSGLTGALFTEFAFTLVSAVTVSAIIALTLSPML 485


>gi|284005702|ref|YP_003391522.1| heavy metal efflux pump, CzcA family [Spirosoma linguale DSM 74]
 gi|283820886|gb|ADB42723.1| heavy metal efflux pump, CzcA family [Spirosoma linguale DSM 74]
          Length = 1469

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 83/678 (12%), Positives = 195/678 (28%), Gaps = 52/678 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE---VDEDDFV 66
           L   +  + L+I     + +  +D  P                   ++ +   +   D  
Sbjct: 14  LIIGLLTLALVIWGGYSVTRLPIDALPDITNNQ-----------VQVITQSPALSAPDV- 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    ++  + L          R   + +T+ F D         +V+  L    S++
Sbjct: 62  ERLISFPIEQTMANLPNLLEVRSISRFGLSVVTIVFEDGVDIYLARQQVSERLGQSRSQI 121

Query: 127 NVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                +     + T   +    VL      +    A+E           Q+  ++     
Sbjct: 122 PAGTGEPALGPVSTGLGEIYQYVLQPKPGYEKRYPAMELRSIQDWIVRRQLLGTKGVADV 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                 L Q     DP RLR    T  ++       N +  G     R       ++ L+
Sbjct: 182 SSFGGFLKQYEVAVDPQRLRAAGVTMDELFMALEKNNQNTGGAYIDRRPNAYFIRSEGLI 241

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +I                    V +     G                         
Sbjct: 242 GTLADIG------------------KVVVRRTPGGIPVLVRDVAQVQLGQAVRYGAMVGN 283

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   I       + +  I         +++                    +    +
Sbjct: 284 GKGEVVGGIVLMLKGANASQVIGNVNQRINQIKSSLPEGVDIHAFLDRTRLVKRAIGTVE 343

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI--V 421
                 A +V+ VL +++   + GLV    I L ++  ++L++L G +  L S+  I   
Sbjct: 344 KNLIEGALIVIFVLVLLLGNWRAGLVVASMIPLCMLFAISLMNLFGVSGNLMSLGAIDFG 403

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN-------ITALIAT 474
           L +  AV         I  +N ++      +D     + S I  S        +   +  
Sbjct: 404 LIVDGAVIIVEATLHHIALKNFRHHLSQEQMDEEVFESASRIRSSAAFGEIIILIVYLPI 463

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM----KSIDINPLSR 530
           + L    G   R  A T+  +IL +   +++ V  +   ++  K +    ++I    +  
Sbjct: 464 LALVGVEGKMFRPMAQTVAFAILGAFILSLTYVPMISALLLSKKPIREGTRTISDRIIHF 523

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLL-FTHGLNYGIDFKGGIQLGVLANRPV 589
           F  + +      +R +   VG+++     ++ +     G       +G + + +      
Sbjct: 524 FHRLYEPAIRWTLRHKGIVVGMALGLFALALFIFSRLGGEFIPQLDEGDLAVEMRIMTGS 583

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L+                +NF   +  + ++      +         +   + +    +
Sbjct: 584 SLAESIDANLKAGQI--LKKNFPEVRETIGKIGSSEIPTDPMPIEATDLMVILKDRADWT 641

Query: 650 TIQNTEIVGPKISRELIR 667
           +  + E +  K+  +L +
Sbjct: 642 SATSREELAEKMQAKLQQ 659



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 63/165 (38%), Gaps = 14/165 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + I + + + +   W   L   + + L +   +    LFG+  NL ++ A+    G 
Sbjct: 347 IEGALIVIFVLVLLLGNWRAGLVVASMIPLCMLFAISLMNLFGVSGNLMSLGAI--DFGL 404

Query: 733 SVNDKVVVYDR-----MRKNMKLYTTSISFRDLIDKSINE-----TLGRSVYTSMAAFIS 782
            V+  V++ +        KN + + +     + + +S +        G  +   +  ++ 
Sbjct: 405 IVDGAVIIVEATLHHIALKNFRHHLSQEQMDEEVFESASRIRSSAAFGEIII--LIVYLP 462

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +L +    G +    A  +AF I+ A   S+     I   +   +
Sbjct: 463 ILALVGVEGKMFRPMAQTVAFAILGAFILSLTYVPMISALLLSKK 507



 Score = 39.7 bits (90), Expect = 2.0,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 81/218 (37%), Gaps = 6/218 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  +   +   Q    +    + + +       ++ V E+  K  ++I        T 
Sbjct: 804  SQVADVSFQNSVNQIQREDAKRRIIVAFNVRGRDVESVVNELQGKINSQIKFPPGYYVTY 863

Query: 656  IVGPKISRELIRKGIVGVIIS-AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                +  +E   +  + V ++  +  L+  +    +  +L   + + L     +    L 
Sbjct: 864  GGQFENLQEAKDRLSIAVPVALGLIFLLLFFTFGSFRQSLLIFSAIPLSAIGGIIALWLR 923

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             + F+++A    + L G +V + +V+      N     T +S  + I +     L   + 
Sbjct: 924  DMPFSISAGVGFIALFGVAVLNGIVLIGEF--NHLKDETDLSLDERILQGTATRLRPVMM 981

Query: 775  TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
            T++ A +  LPMA+    G  V    A  +  G+V A 
Sbjct: 982  TALVASLGFLPMALATSAGAEVQRPLATVVIGGLVSAT 1019


>gi|237720138|ref|ZP_04550619.1| cation efflux system protein [Bacteroides sp. 2_2_4]
 gi|229450690|gb|EEO56481.1| cation efflux system protein [Bacteroides sp. 2_2_4]
          Length = 907

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/679 (10%), Positives = 183/679 (26%), Gaps = 48/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   +V    ++   G   A+   +        P+ +     +       G       
Sbjct: 10  LHNRLVVVCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L V+  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 VVSESLPVNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +   + DP R+R    +  ++       N +  G +             
Sbjct: 174 AQVAVLGGDIKEYQIQLDPERMRHYGISMGEVMAVTQDMNLNANGGVLYEFGNEYIVRGI 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++    +               V                   IG     +   
Sbjct: 234 LSTSKTEQLGKAVVKTVNNFPVTLEDIANVT------------------IGPKAPKLGTA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +   +    A  +   T +    L  + +     +K++    R       S  
Sbjct: 276 SERGKSAVLMTVTKQPATSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+
Sbjct: 336 NVKKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+    +        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVYKRLRENRLKAEAERLSTLEVVFNASKEVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + V LFF  G   R      +   +++  S   A+++   +  +++   K          
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGVAFIVALFASTIVALTLTPVLCSYLLGSNKTNKELKEAPV 515

Query: 530 RFFLIPDCIA---IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             ++               R        LF +                 +G   + + + 
Sbjct: 516 ARWMKGIYEKALTWVLAHKRVTLGSTIGLFVVALGVFFTLGRSFLPSFNEGSFTINISSL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   ++            R +            +E   +      
Sbjct: 576 PGISLEESNKMGHRAEELLMTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSR 635

Query: 647 PLSTIQNTEIVGPKISREL 665
                   E +G      +
Sbjct: 636 SELVADVREKLGTITGANI 654



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 87/266 (32%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      ++++     +     +                         +  + 
Sbjct: 248 KTVNNFPVTLEDIANVTIGPKAPKLGTASERGKSAVLMTVTKQPATSTLELTDKLEASLK 307

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         L 
Sbjct: 308 DLQKNLPPDVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTLI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN-MKL 750
           ++ TL L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +K 
Sbjct: 365 SLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRLKA 424

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +S  +++  +  E     + +++   +S +P+    G    ++    +     +  
Sbjct: 425 EAERLSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGVAFIVALFA 484

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N  +
Sbjct: 485 STIVALTLTPVLCSYLLGSNKTNKEL 510


>gi|163852249|ref|YP_001640292.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
 gi|163663854|gb|ABY31221.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
          Length = 1058

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 82/645 (12%), Positives = 186/645 (28%), Gaps = 29/645 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVN 67
           +  +  C+GL++A    L +  +D  P                   ++ E +      V 
Sbjct: 14  VLVLALCLGLVLAGGLALTRLPVDVLPDLNRPT-----------VTVMTEAEGYAPPEVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   + L              + +T+ F            V   L  V S+L 
Sbjct: 63  QLVTYPIETRMNGLPGVTRVRSVSSAGLSIVTVEFGWDTDLYRDRQFVAERLALVRSELP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 +    +     ++++  +         E +  I+R    ++       Q +   
Sbjct: 123 AGVVPQMGPVASIMGGILLVAVTSETSDPMQVRETADFILR---PRLLSIPGVAQVIPIG 179

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + Q     +P+ +R L  +   +         +  G             N        
Sbjct: 180 GEVRQFRVSPNPAAMRALGVSNEALVTALSGFGTNAGGGFADANAREILIRNIGRTLSLE 239

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           ++  + +             P       E               +P     DG     P 
Sbjct: 240 DLRNLVIPTGPQGATAAADLPGTGNPAIEGRVYLRQIAEVAFAARP--KRGDGGYRGEPA 297

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +  ++       +   T +    L  +       +    +  R       S +  +    
Sbjct: 298 VILSVEKQPGIDTVRLTRDVEAALKEVAPTLPKGMDAQKILFRQADFIETSLANVERVLM 357

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               +V +VLF  ++  +  L++  +I ++++ T  +   LG ++   ++ G+ + IG  
Sbjct: 358 EAVAVVAVVLFAFLMNARTTLISLTAIPVSILATALVFWALGFSINTMTLGGLAIAIGEL 417

Query: 428 VDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           VD  ++  E I    R+N      +SVF  +    S   S I  +    ++  V LF   
Sbjct: 418 VDDAVVDVENIFRRLRENRAEGSPRSVFDVVVAASSEVRSGIVYATAIIVLVFVPLFALS 477

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G           ++IL S+  ++++   +  +++   K  +     L R     +  
Sbjct: 478 GIEGRLFAPLGQAYIVAILASLLVSVTLTPVLASWLLPGMKSLTEREPLLVRRLKAGNAA 537

Query: 539 --AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +     R     I++      I              +G + + V     + L+  R 
Sbjct: 538 LLKVALAHPRVLMTSIALCVVAAGIAAAHLPRAFLPAFNEGSLTINVTFRPGISLAESRR 597

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +   +             R +         +  LE+  K 
Sbjct: 598 VGAIAERLVLDVPEVATVGRRTGRAELDEHAEGVHSSDLEVRLKA 642



 Score = 70.9 bits (171), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 8/137 (5%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMK 749
           L ++T + + I  T   F   G   N   +  +   IG  V+D VV    ++ R+R+N  
Sbjct: 378 LISLTAIPVSILATALVFWALGFSINTMTLGGLAIAIGELVDDAVVDVENIFRRLRENRA 437

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI---PMAFGIV 806
             +   S  D++  + +E     VY +    +  +P+    G     FA         I+
Sbjct: 438 EGSPR-SVFDVVVAASSEVRSGIVYATAIIVLVFVPLFALSGIEGRLFAPLGQAYIVAIL 496

Query: 807 VAASSSIFIAAPILLFI 823
            +   S+ +   +  ++
Sbjct: 497 ASLLVSVTLTPVLASWL 513



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/236 (11%), Positives = 83/236 (35%), Gaps = 8/236 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +  ++  D   Q         + +Q           ++  +++ + E      +    
Sbjct: 802  REIADIRETDGPNQILRENGRRRIVVQANSDGRTDMAAIIAGIRRVLDETRLPEGVSARL 861

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT--LILDITKTLGFFAL 713
                +   E  R      ++S   +   +  R++    L  I    + L +  ++    +
Sbjct: 862  EGSYEAQGEAARTIGGLSLVSLALVFALLHGRYR-SVPLALIVMGNVPLALIGSVLALCI 920

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
              +  ++ ++   +TL G    + ++    M    +    ++    +   S+ E +   +
Sbjct: 921  ADLPLSVASMIGFVTLTGIVARNGILKISHMLNLARDEGLALGPALVTRASL-ERMTPVL 979

Query: 774  YTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             T+++A I+++P+ + G      ++   A+ +  G++ A      +   ++L    
Sbjct: 980  MTALSAGIALVPLLIDGTAPGKEILHPVAVTIFGGLMSATLLDAVLTPVLVLMFGR 1035


>gi|310778166|ref|YP_003966499.1| protein-export membrane protein SecD [Ilyobacter polytropus DSM
           2926]
 gi|309747489|gb|ADO82151.1| protein-export membrane protein SecD [Ilyobacter polytropus DSM
           2926]
          Length = 406

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 141/380 (37%), Positives = 223/380 (58%), Gaps = 22/380 (5%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +         +   A+ + +E++ +RI+ +G++ES +QR G  R++++LPG  +    
Sbjct: 40  VVLEAKPEKDQVIDDEAMTRLIEVLDRRINGLGVAESVVQRAGEKRVIVELPGITNSEEA 99

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
             L+G TA + F  V  + +                       +  ++G  L  A  ++D
Sbjct: 100 VDLIGKTALLEFKIVQEDGT---------------------LGETLLTGGSLKKAAVSYD 138

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +  +    ++ GA +F E+TR+NIGK LAV LDG V TAP IN  IPSG   I+G+
Sbjct: 139 KLG-RAEIQFEMNQEGAVKFAEITRNNIGKKLAVTLDGEVQTAPTINTEIPSGNGVITGS 197

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           +T++ A  +A +L AG+LP++  I+E R+VGA LG +SI K T A    + LI +FMI+ 
Sbjct: 198 YTVDEAKAMATLLNAGALPVRAEILETRSVGASLGDESIAKSTMAAKVAVALIGIFMIIF 257

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   GLVA+ ++ +  I+    L+ L ATLTLP IAG++L  G+AVD+N+++ ERI+EE 
Sbjct: 258 YRLPGLVANLALVVFGIIAFGTLNFLDATLTLPGIAGLILSAGMAVDANVIIFERIKEEL 317

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
               ++  ++D GF +A+  IFDSNIT LI T++LF  G G V+GFAIT+ + IL SMFT
Sbjct: 318 SFGNTILSAIDAGFKKAFGAIFDSNITTLIITMILFTLGTGPVKGFAITLTIGILASMFT 377

Query: 503 AISIVRAMMIFIIRYKKMKS 522
           AI+I + ++   +   K+K 
Sbjct: 378 AITITKILLKGFVGIFKIKR 397



 Score =  116 bits (289), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 4/165 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            VG  +  E I K  +   ++   + I++ I ++    L A   L++      G      
Sbjct: 226 SVGASLGDESIAKSTMAAKVAVALIGIFMIIFYRLP-GLVANLALVVFGIIAFGTLNFLD 284

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++   G +V+  V++++R+++ +       +    ID    +  G    +
Sbjct: 285 ATLTLPGIAGLILSAGMAVDANVIIFERIKEELSF---GNTILSAIDAGFKKAFGAIFDS 341

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++   I  + +   G   +  FAI +  GI+ +  ++I I   +L
Sbjct: 342 NITTLIITMILFTLGTGPVKGFAITLTIGILASMFTAITITKILL 386



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 20/135 (14%), Positives = 42/135 (31%), Gaps = 20/135 (14%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR    + +L+ +   IG                           LGLDL+GG ++VLE 
Sbjct: 1   MRKGTIVKLLFILAILIGAGWLSF----------------VKPTRLGLDLKGGVYVVLEA 44

Query: 61  DEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVT 116
             +      +  +    + L   +   G+    +++  + ++ +        E   D + 
Sbjct: 45  KPEKDQVIDDEAMTRLIEVLDRRINGLGVAESVVQRAGEKRVIVELPGITNSEEAVDLIG 104

Query: 117 LFLQGVNSKLNVDPK 131
                    +  D  
Sbjct: 105 KTALLEFKIVQEDGT 119


>gi|298479692|ref|ZP_06997892.1| heavy metal efflux pump, CzcA family [Bacteroides sp. D22]
 gi|298274082|gb|EFI15643.1| heavy metal efflux pump, CzcA family [Bacteroides sp. D22]
          Length = 1032

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 75/679 (11%), Positives = 184/679 (27%), Gaps = 48/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   +V    ++   G   A+   +        P+ +     +       G       
Sbjct: 10  LHNRLVVVCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L V+  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 VVSESLPVNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +   + DP R+R    +  ++       N +  G +             
Sbjct: 174 AQVAVLGGDIKEYQIQLDPERMRHYGISMGEVMAVTQDMNLNANGGVLYEFGNEYIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++    +               V                   IG     +   
Sbjct: 234 LSTSKTEQLGKAVVKTVNNFPVTLEDIADVT------------------IGPKAPKLGTA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +   I    A  +   T +    L  + +     +K++    R       S  
Sbjct: 276 SERGKSAVLMTITKQPATSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+
Sbjct: 336 NVKKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+    +        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVYKRLRENRQKAKAERLSTLEVVFNASKEVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + V LFF  G   R      +   +++  S   A+++   +  +++   K          
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGVAFIVALFASTVVALTLTPVLCSYLLGSNKTNKELKEAPL 515

Query: 530 RFFLIPDCIA---IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             ++               R        LF +                 +G   + + + 
Sbjct: 516 ARWMKGIYEKALTWVLAHKRVTLGSTIALFVVALGVFFTLGRSFLPSFNEGSFTINISSL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L       +  +   ++            R +            +E   +      
Sbjct: 576 PGISLEESNKMGQRAEELLMTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSR 635

Query: 647 PLSTIQNTEIVGPKISREL 665
                   E +G      +
Sbjct: 636 SELVADVREKLGTITGANI 654



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 86/266 (32%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      D+++     +     +                         +  + 
Sbjct: 248 KTVNNFPVTLEDIADVTIGPKAPKLGTASERGKSAVLMTITKQPATSTLELTDKLEASLK 307

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         L 
Sbjct: 308 DLQKNLPPDVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTLI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLY 751
           ++ TL L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +  
Sbjct: 365 SLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRQKA 424

Query: 752 T-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +S  +++  +  E     + +++   +S +P+    G    ++    +     +  
Sbjct: 425 KAERLSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGVAFIVALFA 484

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N  +
Sbjct: 485 STVVALTLTPVLCSYLLGSNKTNKEL 510



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 102/268 (38%), Gaps = 11/268 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++  + N  VD +  R    S     +S    +      V+ +     +VA  
Sbjct: 766  VKDDARDEIEKIRNLMVDTNDGRKVPLSYVAEVVSAMGPNTINRENVKRKIVISANVADR 825

Query: 633  RVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +  +V      I     +        G +   E      + +      ++I++ +  ++
Sbjct: 826  DLRSVVNDIQKRIDTSVQLPEGYHIEYGGQFESEQAASRTLALTSFISIVVIFLLLYNEF 885

Query: 691  YFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +  L L +    G FAL     E ++ A+   ++L G +  + +++      N
Sbjct: 886  RSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHY--N 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAF 803
                   ++  D + +   + L   + T++++ ++++P+A+     G+ I S  A  +  
Sbjct: 944  HLQKEEGLNVYDSVIRGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++ +   + FI   + L ++  +A+ +
Sbjct: 1004 GLLTSTFLNGFIVPIVYLMMHRKKAQES 1031


>gi|197334862|ref|YP_002156931.1| acriflavin resistance plasma membrane protein [Vibrio fischeri
           MJ11]
 gi|197316352|gb|ACH65799.1| acriflavin resistance plasma membrane protein [Vibrio fischeri
           MJ11]
          Length = 1032

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 66/532 (12%), Positives = 152/532 (28%), Gaps = 31/532 (5%)

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +     L    ++    ++          +    +TL F+     +     V   +  
Sbjct: 56  SPEDSERLLVRPMEQELRSIEGIKEMTAVAGEGHGSVTLEFSVGVDLDKALTDVRDAVDL 115

Query: 122 VNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           V   L  +  +  +   T   E +++            A++ +    R+  D++   +  
Sbjct: 116 VKPNLPEESDEPTVHEVTLAAEQAVLSVVLYGTVPERTAVQIA----RKLQDKLESYKQI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           ++   +      +    DP  L       A +     L N           + R S    
Sbjct: 172 LEVDIAGDREDVVEIIVDPLLLESYGLDQAAIYNLIALNNRVVAAGFVDTGYGRFSVKVP 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            + E   ++                    +++     G +         + K        
Sbjct: 232 SVFESLKDV--------------------LELPIKVDGKQVVTFGDIATVRKAFRDPNSY 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGIL--AAMLRAGSLPIKLNIVEERNVGADLGS 358
             L            ++  +   T+E    +   A          L              
Sbjct: 272 ARLNGEKAIVLDIKKRSGENIIETVEIVKAVLSRAQQLDDWPNNLLVKYTWDESKDVKIM 331

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +  +        LV+IV+  I+      L+   SI  + +  L +L++ G T+ +  + 
Sbjct: 332 LNDLQNNILSAILLVVIVIIAILGART-ALLVGISIPGSFLTGLLILAVSGLTINIVVLF 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +++ +G+ VD  I+V E      ++      +      R    I  S  T L A   L 
Sbjct: 391 SLIMAVGMLVDGAIVVTEYADRRMQEGAHRVEAYREAAQRMAWPIIASTATTLAAFAPLL 450

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F+    G  ++   +T+  ++  S+  A+  V  +     + +++       L       
Sbjct: 451 FWPDITGEFMKYLPLTLIATLSASLVMALLFVPVLGSLFGKPQQVLPKKRVKLQALSRGD 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
              A    +  +  +  S+      + L  T  +  G  +       V    
Sbjct: 511 YTQAEGVTKLYYQTLSFSLKHPFKILLLAITFAVGIGFTYAKAGLGVVFFPD 562



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/263 (7%), Positives = 82/263 (31%), Gaps = 12/263 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V   + V    + +  ++ +  +   +    +   L   +    + +    +++ V 
Sbjct: 244 PIKVDGKQVVTFGDIATVRKAFRDPNSYARLNGEKAIVLDIKKRSGENIIETVEIVKAVL 303

Query: 640 KKITEIVPLSTI--QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
            +  ++                K  + ++      ++ + + ++I I        AL   
Sbjct: 304 SRAQQLDDWPNNLLVKYTWDESKDVKIMLNDLQNNILSAILLVVIVIIAILGARTALLVG 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++       L   A+ G+  N+  + +++  +G  V+  +VV +      +        
Sbjct: 364 ISIPGSFLTGLLILAVSGLTINIVVLFSLIMAVGMLVDGAIVVTE---YADRRMQEGAHR 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
            +   ++        + ++     +  P+  W    G  +    + +   +  +   ++ 
Sbjct: 421 VEAYREAAQRMAWPIIASTATTLAAFAPLLFWPDITGEFMKYLPLTLIATLSASLVMALL 480

Query: 815 IAAPILLFIYDWR----AKNARI 833
               +       +     K  ++
Sbjct: 481 FVPVLGSLFGKPQQVLPKKRVKL 503



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 24/215 (11%)

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KW 690
             +V E +K           ++         +  L        +I+   M I +  +F  +
Sbjct: 821  PKVEEALKNLDLPKGVEFKLRGQNEEQNNSAAFLQN----AFLIALAVMAIILVTQFNSF 876

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAV-AAVLTLIGYSVNDKVVVYDRMRKNMK 749
            Y A   ++ ++           +F   F +      V++L G  VN+ +V+ D       
Sbjct: 877  YQAFLILSAVLFSTVGVFAGLLIFQRPFGIIMSGIGVISLAGIVVNNNIVLIDTYN---T 933

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV------------WGGSVIG-- 795
            L    I   D I ++  + L   + T++   + ++PM +            +G       
Sbjct: 934  LRKEGIEKVDAILRTGVQRLRPVMLTTVTTILGLMPMVLEMNIDLVNQKVEFGAPSTQWW 993

Query: 796  -SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               A  +A G+  A   ++ +   +L+   D + +
Sbjct: 994  SQLATAVAGGLAFATVLTLVLTPCLLMLGRDKKIR 1028


>gi|229077147|ref|ZP_04209851.1| hypothetical protein bcere0024_57810 [Bacillus cereus Rock4-18]
 gi|228706166|gb|EEL58451.1| hypothetical protein bcere0024_57810 [Bacillus cereus Rock4-18]
          Length = 706

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 65/563 (11%), Positives = 177/563 (31%), Gaps = 65/563 (11%)

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
             E +          +    +             S++        V    +++ F  V +
Sbjct: 109 VTEASKDKILDSIETTRDAGIQTELSGGDVTFSDSETSGMTEIVGVLVAFVVLAFTFVSF 168

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGAT--LTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              GL    +I    I  L ++         ++      +LG+ + +D  + +  R R++
Sbjct: 169 LVAGLPILTAIIGLAIGMLGIMIGTNYVEIQSVSLSLAAMLGLAVGIDYALFIINRFRQQ 228

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
             +  SV  S+ +    A S +  + +T +I  + L       +    ++   ++L ++ 
Sbjct: 229 LAQGDSVPESVAIATGTAGSAVIFAGLTVIIGLLGLSVTKIPFLTAMGVSAAFTVLAAVL 288

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR---ARFWGVGISILFSI 558
            ++ I+ A++  +         +                        R   +       +
Sbjct: 289 VSVIILPAILGLVGHKIAPSKQNRFLQKMTGAGKKHAGSNKWGEFVIRRPLIVTIFSIGL 348

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPV----------------------------- 589
            ++  +    +N G+   G  +      R                               
Sbjct: 349 LAVISIPFFHMNLGLPSDGTTKSTETTERRAYDLLTEAYGEGFHASLMVVAKSDEATAET 408

Query: 590 -----DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 ++    NL  ++    +     G+ + +        D      +++ ++ K  +
Sbjct: 409 QNAMNTIAKELGNLPDVKSVTPAIPGPSGKIHMISITPKAGPDDTKTKDLVKAIRDKSNQ 468

Query: 645 IVPLSTIQNTEIVGPKISRELIRKG------IVGVIISAIAMLIYIWIRFKWYFALGAIT 698
               + ++        ++ ++++K          +I+    +L+ +  R      L A+ 
Sbjct: 469 TEKKNEVELMVTGTAAMNIDIVQKLSDALPVFAALIVGLAYVLLVLVFR-SLLVPLKAVL 527

Query: 699 TLILDITKTLGFFA----------LFGIEFNLTAVA-----AVLTLIGYSVNDKVVVYDR 743
             +L +  TLG             +FG       +A      +  L G +++ +V +  +
Sbjct: 528 GFLLSLGATLGAVVFFVQDGHFQNIFGFPAAGPILAFLPVILIGILFGLAMDYEVFLVSK 587

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           MR+   +YT +   +  I + + E+    V   +      +   +   ++I S  + + F
Sbjct: 588 MRE---VYTHTGDPKRAIVEGMRESGRVVVAAGLIMMSVFIGFMLAPDTIIKSIGMALTF 644

Query: 804 GIVVAAS-SSIFIAAPILLFIYD 825
           G+   A    + I   +++ +  
Sbjct: 645 GVFFDAFIVRMTIVPAVMILMGK 667



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 79/242 (32%), Gaps = 8/242 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V   + + +        +  QN   +K     +      +   T   +       E    
Sbjct: 67  VLEEIKKDSAVDSVAAPMQLQNLSEDKTIGYAVVTYKVKAEKVTEASKDKILDSIETTRD 126

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK- 706
           + IQ     G     +    G+  ++   +A  + +   F  +  A   I T I+ +   
Sbjct: 127 AGIQTELSGGDVTFSDSETSGMTEIVGVLVA-FVVLAFTFVSFLVAGLPILTAIIGLAIG 185

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGY--SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
            LG           +   ++  ++G    ++  + + +R R+ +       S  + +  +
Sbjct: 186 MLGIMIGTNYVEIQSVSLSLAAMLGLAVGIDYALFIINRFRQQLAQ---GDSVPESVAIA 242

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                   ++  +   I +L ++V     + +  +  AF ++ A   S+ I   IL  + 
Sbjct: 243 TGTAGSAVIFAGLTVIIGLLGLSVTKIPFLTAMGVSAAFTVLAAVLVSVIILPAILGLVG 302

Query: 825 DW 826
             
Sbjct: 303 HK 304


>gi|212693869|ref|ZP_03301997.1| hypothetical protein BACDOR_03391 [Bacteroides dorei DSM 17855]
 gi|237708493|ref|ZP_04538974.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           9_1_42FAA]
 gi|237723966|ref|ZP_04554447.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           D4]
 gi|265751346|ref|ZP_06087409.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           3_1_33FAA]
 gi|212663401|gb|EEB23975.1| hypothetical protein BACDOR_03391 [Bacteroides dorei DSM 17855]
 gi|229437630|gb|EEO47707.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides
           dorei 5_1_36/D4]
 gi|229457422|gb|EEO63143.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           9_1_42FAA]
 gi|263238242|gb|EEZ23692.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           3_1_33FAA]
          Length = 1027

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 72/617 (11%), Positives = 177/617 (28%), Gaps = 34/617 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATNVRRVRSSSTNGFSVVWVEFEWDTDIYLARQIVSEKLSLV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + +L  +  K  +   +     +++     D      ++           ++  +    Q
Sbjct: 118 SEELPENVGKPTMGPQSSILGELLIIGLTSDTTSM--LDLRTLADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +     DP+R++    T A++       N +  G +               
Sbjct: 176 VAVLGGDIKEYQVLLDPARMKHYNVTLAEVMNVTRNMNQNANGGVIYEYGNEYIVRGVLS 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D  ++S   +               V                   IG     +     
Sbjct: 236 SHDVAQLSRSVIKTVEGVPVTLEDIADVK------------------IGSQEPKLGTASE 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +   +       +   T +    L  + +     + ++    R       S    
Sbjct: 278 RGKPAVLLTVTKQPKTGTIELTEQLEAALKDLQKNLPADVHVSTDIFRQSRFIESSIGNV 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K +    A  V+IVLF+ +   +  +++  ++ L++I+++  L  +G T+   S+ G+ +
Sbjct: 338 KDSLYEGAIFVVIVLFLFLANVRTTVISLVTLPLSLIVSILTLHYMGLTINTMSLGGMAI 397

Query: 423 GIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +  R+N+        SV   +          I +S +  +++ 
Sbjct: 398 AIGSLVDDAIVDVENVWKHLRENRLLPEGERKSVIEVVFNASKEVRMPILNSTLIIVVSF 457

Query: 475 VVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LFF  G   R      I   +++  S   A+++   +  +++   K K +        
Sbjct: 458 VPLFFLTGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGNNKSKGLPKEAFVAV 517

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANRP 588
           ++                V +     + ++ L+    L         +G   + + +   
Sbjct: 518 WMKKHYRNTLLWSLNHKSVVLGFTGGLFAVALVMFFALGRSFLPSFNEGSFTINISSLPG 577

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L+         +   +S            R +            +E   +        
Sbjct: 578 ISLAESDKMGHRAEELLMSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSRQE 637

Query: 649 STIQNTEIVGPKISREL 665
                   +       +
Sbjct: 638 LVADVRAKLSTITGANI 654



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/303 (9%), Positives = 84/303 (27%), Gaps = 13/303 (4%)

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
               R      +              G+    D     +  +     V +++       +
Sbjct: 206 MNVTRNMNQNANGGVIYEYGNEYIVRGVLSSHDVAQLSRSVIKTVEGVPVTLEDIADVKI 265

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              +             V L            + E ++  + ++                
Sbjct: 266 GSQEPKLGTASERGKPAVLLTVTKQPKTGTIELTEQLEAALKDLQKNLPADVHVSTDIFR 325

Query: 662 SRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   I  V       +   +++           + ++ TL L +  ++      G+
Sbjct: 326 QSRFIESSIGNVKDSLYEGAIFVVIVLFLFLANVRTTVISLVTLPLSLIVSILTLHYMGL 385

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRM----RKNMKL-YTTSISFRDLIDKSINETLGR 771
             N  ++  +   IG  V+D +V  + +    R+N  L      S  +++  +  E    
Sbjct: 386 TINTMSLGGMAIAIGSLVDDAIVDVENVWKHLRENRLLPEGERKSVIEVVFNASKEVRMP 445

Query: 772 SVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++   +S +P+    G    ++    I     +  +   ++ +   +  ++     
Sbjct: 446 ILNSTLIIVVSFVPLFFLTGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGNNK 505

Query: 829 KNA 831
              
Sbjct: 506 SKG 508



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 98/259 (37%), Gaps = 21/259 (8%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + ++ V   + ++    IS +N   +         +   SV       +  
Sbjct: 781  MIDTGDGQKIPVNYVADVISAMGPNTISRENVKRKIVISANTSGRDLRSVVNDIQERIDA 840

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +                     SR L+    + +++    + + ++ +FK   A   +  
Sbjct: 841  QIKLPEGYHVEYGGQFESEQAASRTLMLTSFMSIVV----IFLLLYTQFK-NAAQSGVIL 895

Query: 700  LILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTS 754
            L L +    G FAL     E ++ A+   ++L G +  + +++       R+        
Sbjct: 896  LNLPLALIGGVFALMITTGEISIPAIIGFISLFGIATRNGMLLISHYNTLREE------G 949

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAAS 810
            +  ++ I     + L   + T++++ ++++P+A      G+ I S  A  +  G++ +  
Sbjct: 950  MDLKESILHGSLDRLNPILMTALSSALALIPLAFRGDLPGNEIQSPMAKVILGGLLTSTF 1009

Query: 811  SSIFIAAPILLFIYDWRAK 829
             + FI  PI+  + + + K
Sbjct: 1010 LNAFII-PIVYELMNRKKK 1027


>gi|264677548|ref|YP_003277454.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni
           CNB-2]
 gi|262208060|gb|ACY32158.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni
           CNB-2]
          Length = 1029

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 86/653 (13%), Positives = 197/653 (30%), Gaps = 50/653 (7%)

Query: 54  SHLVLEVDE------DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF 107
           +++ ++V         + +  F+ +  +   + L          +   + ITL F D+  
Sbjct: 43  TNVQVQVATEAPGRSPEEIERFVTVPLEIAMTGLPGLAEMRSLNKSGLSIITLVFTDATD 102

Query: 108 KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
                   T  L  V  ++       L   +T        + ++ D       +  +   
Sbjct: 103 VYFARQLATERLIEVTPRMPEGIVPVLGPVSTGLGEVYQYTLDHPDDGKRELTQAELTER 162

Query: 168 RQRIDQ-----IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
           R   D      +       +       + Q     DP+RLR    +  ++       N +
Sbjct: 163 RTIQDWVARPLLRSIPGVAEINSQGGYVKQYQVLVDPARLRHYNLSVRQVVQAVADNNAN 222

Query: 223 KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
             G +      +       ++    +I  I L               V I  +       
Sbjct: 223 ASGGILPQVTEQYLIRGVGMIRTLDDIGNIVLKEQGGVPVYVRDVAKVQIDAEVRQGAII 282

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
                + +   + ++                          T     +     +      
Sbjct: 283 KGGYTEGVSGIVLMMR-----------------GGNAKEVVTRVKERVEEINSKGMLPGG 325

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
              +           +             LV++VLF+ +   +  L+   ++ +  + T 
Sbjct: 326 LQIVPYYDRTDLVDSALWTVGKVLIEGIFLVVVVLFIFLGDVRSSLIVVATLIITPLTTF 385

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE-----NRKNQSVFCSLDMGFS 457
            +++  G +  L S+ G+ + IGL VD+ ++V E +  +     N + + +   L     
Sbjct: 386 IMMNKYGISANLMSLGGLAIAIGLMVDATVVVVENVFHKLGQAGNSRGERIRTVLSATVE 445

Query: 458 RAYSTIFDSNITALIATVVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMI-FI 514
            A  TIF   I  L+   ++   G  G      A+T+ +++ IS+  ++ +   +   F+
Sbjct: 446 VATPTIFGIAIIILVFLPLMTLQGIEGKMFGPLALTIAMALAISLAVSLFLSPVLCSYFL 505

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR--------------FWGVGISILFSICS 560
                  +  I  L R +L     A    R                F  +G S + ++  
Sbjct: 506 KGGADHDTKLIGFLKRHYLRLLDGATARNRLTLAVAVALLIGSLGLFPFLGKSFMPTMKE 565

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             L         I     I++ + A + V       ++ S      S  +  G       
Sbjct: 566 GALTPQINRVPSISLDESIRMEMAAMKEVAQVPGVKSVVSKLGRGESPADPAGPNESDPI 625

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +   P     Q  + E +++++++I  +  + +  I           +  + V
Sbjct: 626 VLLDPESERTQDEIDEEIRQRLSKIPGVQIVLSQPISERVDEMVTGVRSQLAV 678



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 77/217 (35%), Gaps = 9/217 (4%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            G    +  +        A+  V  + ++              +IV      +L+   + 
Sbjct: 284 GGYTEGVSGIVLMMRGGNAKEVVTRVKERVEEINSKGMLPGGLQIVPYYDRTDLVDSALW 343

Query: 672 GVIISAI-AMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            V    I  + + + + F        +L  + TLI+    T      +GI  NL ++  +
Sbjct: 344 TVGKVLIEGIFLVVVVLFIFLGDVRSSLIVVATLIITPLTTFIMMNKYGISANLMSLGGL 403

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLP 785
              IG  V+  VVV + +   +     S   R   +  +  E    +++      +  LP
Sbjct: 404 AIAIGLMVDATVVVVENVFHKLGQAGNSRGERIRTVLSATVEVATPTIFGIAIIILVFLP 463

Query: 786 MAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPI 819
           +    G     F   A+ +A  + ++ + S+F++  +
Sbjct: 464 LMTLQGIEGKMFGPLALTIAMALAISLAVSLFLSPVL 500



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 48/120 (40%), Gaps = 8/120 (6%)

Query: 694  LGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            L ++  L+L      G   LF  G   ++ A    + L G +V + VV+   +R   +L 
Sbjct: 891  LASLIILVLPFASIGGLIGLFVTGEYVSVPASVGFIALWGIAVLNGVVLVSSIR---QLR 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +   + + +   +     + T+  A + ++P       G  V    AI +  G++ +
Sbjct: 948  QDGMDVAEAVREGCTQRFRPVMMTATVALLGLVPFLFATGPGSEVQRPLAIVVIGGLITS 1007


>gi|312876082|ref|ZP_07736070.1| protein-export membrane protein SecD [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797068|gb|EFR13409.1| protein-export membrane protein SecD [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 415

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 32/198 (16%), Positives = 81/198 (40%), Gaps = 4/198 (2%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
              G    +       + K   +     +  ++ +GP +  E  +  +   II  + + +
Sbjct: 197 IIEGMKDLEEAKTLAQQIKAGALPFALNVIESKAIGPSLGNEAFKSTLKAGIIGILLVFL 256

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           ++ I ++    L A   L+  I   +       I   L  +A ++   G +V+  ++++ 
Sbjct: 257 FMIIFYRLP-GLIADIALVAYIVILVAIVGYAKITLTLPGIAGIILSAGMAVDANILIFA 315

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA 802
           R+++ ++   +  + R  +D      L   + +++   I+ + +   G   I  FA  + 
Sbjct: 316 RLKEELR---SGKTLRAAMDAGFRRALNAVIDSNVTTIIAGIVLLFLGTGPIKGFAWTLT 372

Query: 803 FGIVVAASSSIFIAAPIL 820
            GIVV+  ++I +   +L
Sbjct: 373 IGIVVSFFTAITVTRFLL 390



 Score =  119 bits (297), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 121/407 (29%), Positives = 215/407 (52%), Gaps = 28/407 (6%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              +K +      K    ++ +   +      +E ++++IR R+D     ++T    GS 
Sbjct: 35  PSVQKVIRYGLDLKGGVYIVYEAAKENPTRREMESALQLIRTRLDMRNFYDATATIQGSK 94

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI +++PG +DP    Q +G TA + F                                +
Sbjct: 95  RIRVEIPGVKDPDEAIQYIGRTALIEF--------------------------KGPSGDL 128

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +SG ++    A         VV + FD+ G ++F E T+  +G+ + + LDG++++ P+
Sbjct: 129 IVSGRNVVD--AYAQQTASGYVVALKFDKEGTKKFAEGTKKYLGQNIGIYLDGKLISNPI 186

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I +G+A I G   +E A  LA  ++AG+LP  LN++E + +G  LG+++      A
Sbjct: 187 VRAEIDNGEAIIEGMKDLEEAKTLAQQIKAGALPFALNVIESKAIGPSLGNEAFKSTLKA 246

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + G++L+ LFMI+ Y   GL+AD ++   +++ +A++     TLTLP IAGI+L  G+A
Sbjct: 247 GIIGILLVFLFMIIFYRLPGLIADIALVAYIVILVAIVGYAKITLTLPGIAGIILSAGMA 306

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+NIL+  R++EE R  +++  ++D GF RA + + DSN+T +IA +VL F G G ++G
Sbjct: 307 VDANILIFARLKEELRSGKTLRAAMDAGFRRALNAVIDSNVTTIIAGIVLLFLGTGPIKG 366

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           FA T+ + I++S FTAI++ R ++  II     K I      +   +
Sbjct: 367 FAWTLTIGIVVSFFTAITVTRFLLTSIINTGLFKDIRWYGGKKTREV 413



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 1   MRNNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N      L   ++      I       +      PS   +  I  GLDL+GG ++V E
Sbjct: 1   MQNKSLAKFLIGCLVIAFAFYIVFFGL--EIGTASIPSV--QKVIRYGLDLKGGVYIVYE 56

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
             +++     ++     +R+ L        +     + +I +     +  +     +   
Sbjct: 57  AAKENPTRREMESALQLIRTRLDMRNFYDATATIQGSKRIRVEIPGVKDPDEAIQYIGRT 116

Query: 119 L 119
            
Sbjct: 117 A 117


>gi|58698100|ref|ZP_00373023.1| protein-export membrane protein SecD [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535346|gb|EAL59422.1| protein-export membrane protein SecD [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 452

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 33/159 (20%), Positives = 72/159 (45%), Gaps = 4/159 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           GP +  E I+ G +   IS IA+ ++I I +     + A   L  ++   L    L    
Sbjct: 282 GPSLGEESIKAGEMAATISIIAVALFIIITYG-KLGVLASVALFSNVVLILSILTLLEAT 340

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A +   +G +V+  V++++R+R+ +K           I++     +   + +++
Sbjct: 341 LTLPGIAGIALTVGMAVDANVLIFERIREEIKSGKR---VERAIEEGFKNAIKTILDSNI 397

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              I+   M + G   I  F++ ++ GI+ +  S+I + 
Sbjct: 398 TTLIAAGIMFIIGSGAIRGFSVTLSIGILCSMFSAITVT 436


>gi|330829030|ref|YP_004391982.1| putative cation efflux system transmembrane protein [Aeromonas
           veronii B565]
 gi|328804166|gb|AEB49365.1| Putative cation efflux system transmembrane protein [Aeromonas
           veronii B565]
          Length = 1042

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/510 (12%), Positives = 140/510 (27%), Gaps = 40/510 (7%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD 75
             GL         Q+ +D  P       I                     V   +     
Sbjct: 25  AWGLWSV-----KQTPVDALPDLSDVQVI---------IKTSYPGQAPQVVEDQVTYPLT 70

Query: 76  ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL 135
                +              + + + F D+        +V  +L  V   L    +  L 
Sbjct: 71  TAMLAVPGATTVRGYSFFGDSFVYVLFDDNTDLYWARARVLEYLSQVAPNLPASARPQLG 130

Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195
              T                     + +         ++   E   +      ++ Q   
Sbjct: 131 PDATGVGWVYQY-ALVDKTGKHDLSQLTSLQNWFLKYELQTVEGVSEVATVGGMVRQYQV 189

Query: 196 EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLN 255
             DP +LR      + +       N      +  +        +   ++   ++      
Sbjct: 190 RVDPDKLRAYGIPLSLIETAIKQGNQETGASVIEMAEAEYMVRSNGYLKSVEDLK----- 244

Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSG 315
                         + +     GA        D +  P        +     +   I   
Sbjct: 245 -------------QIPLGTTVRGAPLLLGDVADVVTGPQMRRGIAELNGEGEVVGGIIVM 291

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           +   +   TI+      A L++        +           +     G       +V++
Sbjct: 292 RYGENAQHTIDGVKARLAELKSSLPEGVEIVTVYDRSDLIQRAIDNLSGKLLEEFAVVVL 351

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
           V    + + +  LV   ++ + +++   ++ L G    + S+ GI + IG  VD  I++ 
Sbjct: 352 VCLAFLFHLRSSLVVVITLPIAILVAFIVMHLQGINANIMSLGGIAIAIGAMVDGAIVMI 411

Query: 436 ERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF---FFGGGAVRGF 488
           E + +   +    +++ +  +          IF S +   I+ + +F      G      
Sbjct: 412 ENVHKHMEREALTDKNRWRIITEASIEVGPAIFFSLLIITISFLPVFALEAQEGRMFHPL 471

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYK 518
           A T   ++  +   AI++V  +M + IR K
Sbjct: 472 AFTKTYAMAAAAALAITLVPVIMGYFIRGK 501



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+ +   F    +L  + TL + I        L GI  N+ ++  +   IG  V+  
Sbjct: 348 VVVLVCLAFLFHLRSSLVVVITLPIAILVAFIVMHLQGINANIMSLGGIAIAIGAMVDGA 407

Query: 738 VVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           +V+ + + K+M +   T  +   +I ++  E      ++ +   IS LP+          
Sbjct: 408 IVMIENVHKHMEREALTDKNRWRIITEASIEVGPAIFFSLLIITISFLPVFALEAQEGRM 467

Query: 797 F 797
           F
Sbjct: 468 F 468



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/258 (14%), Positives = 80/258 (31%), Gaps = 15/258 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   +   + L+ V     S +   +  +N        V ++ +   S       E+ K
Sbjct: 780  PVVTPSGARIALADVARVYISDEAPMLRSENARLNGWVYVDIRGRDVGSFVAEAKAEVNK 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + +       T         +    L    +V + ++ I +L+Y+  R         +  
Sbjct: 840  QLVLPAGYALTWSGQYEYMERAKARL--AYVVPLTVAIIVLLLYLAFR---RVQEVLLIL 894

Query: 700  LILDITKTLGFFALFGIEFNLTAV--AAVLTLIGYSVNDKVVVYDRMRKNM-----KLYT 752
              L +    G + L+ ++FNL+       + L G +V   V++   +             
Sbjct: 895  TTLPLAVVGGIWTLWLLDFNLSVAVGVGFIALAGVAVETGVLMLVYLNHAWDDLVASGKP 954

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                    +       L   + T +     +LP+      G  V+   A PM  G+V A 
Sbjct: 955  DKAGLHRAVIHGAALRLRPKMMTVVTIIAGLLPIMWSHGTGSEVMQRIAAPMIGGMVSAL 1014

Query: 810  SSSIFIAAPILLFIYDWR 827
              ++ +            
Sbjct: 1015 VLTLLVLPAAYYLWRSRS 1032


>gi|56963330|ref|YP_175061.1| preprotein translocase subunit SecD [Bacillus clausii KSM-K16]
 gi|56909573|dbj|BAD64100.1| preprotein translocase subunit D [Bacillus clausii KSM-K16]
          Length = 433

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 111/377 (29%), Positives = 195/377 (51%), Gaps = 6/377 (1%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
             D++   ++  +   + +R++ IG+SE  IQ  G +RI +QL G +D    R +L T A
Sbjct: 53  EGDEINQDSLLATTTALNERVNTIGVSEPNIQIEGENRIRVQLAGVEDQETARDILATGA 112

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           +++   V         + G    ++        E    I  + L    A+   +  + + 
Sbjct: 113 ELTIRDVDD----NVLLDGSDLTQNGASASVHPEKNQPI--VTLTLNDADKFGEITREIS 166

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
           +    E     + +    +     +   D + ++A  +N  + +    I GNFT E    
Sbjct: 167 ERPLGENLLVIWLDFEEGDSFAEESKKQDPKYMSAASVNAPLHTRDVMIEGNFTTEETRF 226

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +L AG+LP++LN +   +VGA LG  ++ +   A   G+ LI L+M+V Y   G++A
Sbjct: 227 LAEILNAGALPVELNEIYSTSVGASLGEKAMNQTIFAGSLGVALIFLYMVVYYRFPGIIA 286

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ +   L L + + + A LTLP IA +VLG+G+AVD+NI+  ERI+EE +  +S+  
Sbjct: 287 VITLSIYTFLVLVVFNAMNAVLTLPGIAALVLGVGMAVDANIITYERIKEEIKSGKSILS 346

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +  +G  R+++TIFD+NIT LIA  V+F+FG  +V+GFA+ + +SIL+S  TA+   R +
Sbjct: 347 AFKVGSRRSFATIFDANITTLIAAGVMFYFGTSSVQGFAVMLIISILVSFLTAVYGSRVL 406

Query: 511 MIFIIRYKKMKSIDINP 527
           +   +  K +       
Sbjct: 407 LGLWVNSKFLNKRPGWF 423



 Score =  116 bits (290), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 90/246 (36%), Gaps = 5/246 (2%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKN-FLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            +D     S  E  +  D  + +          R     G+   +             + 
Sbjct: 178 WLDFEEGDSFAEESKKQDPKYMSAASVNAPLHTRDVMIEGNFTTEETRFLAEILNAGALP 237

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                  +  VG  +  + + + I    +    + +Y+ + +++   + A+ TL +    
Sbjct: 238 VELNEIYSTSVGASLGEKAMNQTIFAGSLGVALIFLYMVVYYRFP-GIIAVITLSIYTFL 296

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L  F        L  +AA++  +G +V+  ++ Y+R+++ +K   +  S          
Sbjct: 297 VLVVFNAMNAVLTLPGIAALVLGVGMAVDANIITYERIKEEIK---SGKSILSAFKVGSR 353

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +       ++   I+   M  +G S +  FA+ +   I+V+  ++++ +  +L    + 
Sbjct: 354 RSFATIFDANITTLIAAGVMFYFGTSSVQGFAVMLIISILVSFLTAVYGSRVLLGLWVNS 413

Query: 827 RAKNAR 832
           +  N R
Sbjct: 414 KFLNKR 419



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 59/418 (14%), Positives = 131/418 (31%), Gaps = 25/418 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDF 65
           +      I L  +   +  + ++         N +SLGLDL+GG  ++ EV+     D+ 
Sbjct: 7   IALFFLIIALFASGIAYFAKPVV---------NDVSLGLDLQGGFEVLYEVEPMNEGDEI 57

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNS 124
               L   +  L   +   G+   +++    N+I +  A    +E   D +    +    
Sbjct: 58  NQDSLLATTTALNERVNTIGVSEPNIQIEGENRIRVQLAGVEDQETARDILATGAELTIR 117

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNID--QVISHAIEQSMEIIRQRIDQI--GISEST 180
            ++ +   +    T     + V  + N     +  +  ++  EI R+  ++         
Sbjct: 118 DVDDNVLLDGSDLTQNGASASVHPEKNQPIVTLTLNDADKFGEITREISERPLGENLLVI 177

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      +   +QDP  +          +   ++  N        +  + ++    
Sbjct: 178 WLDFEEGDSFAEESKKQDPKYMSAASVNAPLHTRDVMIEGNFTTEETRFLAEILNAGALP 237

Query: 241 YLVEDKVEIS-GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
             + +    S G  L     N         V + F  M     F      I   +   L 
Sbjct: 238 VELNEIYSTSVGASLGEKAMNQTIFAGSLGVALIFLYMVVYYRFPGIIAVITLSIYTFLV 297

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             V  A      +P   A + G      A I+        +    +I+    VG+     
Sbjct: 298 LVVFNAMNAVLTLPGIAALVLGVGMAVDANIITYERIKEEIKSGKSILSAFKVGSRRSFA 357

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +I+      +    ++       Y     V  F++ L + + ++ L+ +  +  L  +
Sbjct: 358 TIFDANITTLIAAGVM------FYFGTSSVQGFAVMLIISILVSFLTAVYGSRVLLGL 409


>gi|319940506|ref|ZP_08014851.1| cation efflux system protein cusA [Sutterella wadsworthensis
           3_1_45B]
 gi|319806132|gb|EFW02881.1| cation efflux system protein cusA [Sutterella wadsworthensis
           3_1_45B]
          Length = 1045

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/557 (10%), Positives = 138/557 (24%), Gaps = 47/557 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   ++    ++   G++  L     ++ +D  P  +   ++ +  D  G          
Sbjct: 12  NRVLVLFGALLLAIAGIVAVL-----KTPVDALPD-LSDVQVIIKTDYSG--------QA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +          +              + + + F D         +V   L   
Sbjct: 58  PEIVENEVTYPISTTMLSVPGASTVRGFSLFGTSFVYVLFEDGTDLYWARSRVLESLNSA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL       L    T                 +               ++       +
Sbjct: 118 AGKLPSGVTPELGPDATGVGWIYQY-ALVDKSGKNDLESLRALQDWFLKYELKTIPGVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +     DP +L Q   T   +       N    G    +         Q  
Sbjct: 177 VASVGGAVKEYQIIPDPVKLEQYGVTVGDIKTALSASNQEAGGGSIEMGESEFMVRAQGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                     + +  +  G              P        +
Sbjct: 237 LKTLDDFR------------------SIVLKTNASGTPTVLGDVAQVRLGPEMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    I         L++        +           +    
Sbjct: 279 DGEGEVAGGIILLRTGGNAREVIAAVKTRLEELKSALPEGVEIVPVYDRSSLIDRAIQNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  ++ L + L    +   G    + S+ GI +
Sbjct: 339 THKLIEEFIVVALVCAIFLWHVRSALVAVITLPLGLALAFIAMHFQGLNANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            +G  VD+ I++ E   +                   +  +          +F S +   
Sbjct: 399 AVGAMVDAAIVMIENAHKHIEAWEEAHPGADLAGAERWQVITEAAVEVGPALFMSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   S+  S F A+ +V  +M   IR K          
Sbjct: 459 LSFIPIFTLEGQEGRLFGPLAWTKTWSMAASAFLAVVLVPVLMGLWIRGKIPPEDKNPLN 518

Query: 529 SRFFLIPDCIAIQFMRA 545
                +   + +  +R 
Sbjct: 519 RWLVRLYQPLLMGVLRR 535



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 97/285 (34%), Gaps = 14/285 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I + F        +    + +   + + + L  V     SL    +  +N     
Sbjct: 763  IARYPITIRFPQSWRDSPEALRNLPIISGSGQSLTLGDVAEIRTSLGPSMLRTENARPAA 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V  + +   SVA      + K    +            +  +    L     + ++I
Sbjct: 823  WVFVDARDRDMASVAGDLREAIAKSVSLKPGVSVAFSGQYELMERAKDRLTLMVPMTILI 882

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R ++  +L  + +L   +T  +    L G   ++      + L G +  
Sbjct: 883  --IFVLLYLAFR-RFAESLLILGSLPFALTGGIWLLYLLGDRLSVAVGTGFIALAGLAAE 939

Query: 736  DKVVVYDRMRKNMKLYTTSISFR----DLIDKSINETLGRSV----YTSMAAFISVLPMA 787
              VV+   +R  ++   +    +    + +D++I       V     T       ++P+ 
Sbjct: 940  FGVVMIVYLRHAVQNDKSLADPKTFTVEALDRAIEHGAALRVRPKTMTVAVVLAGLIPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            V    G  V+   A PM  G+V A   S+F+       I   R K
Sbjct: 1000 VGTGAGSEVMSRIAAPMVGGMVTAPLLSLFVIPAAWKLIMLRRRK 1044


>gi|160897162|ref|YP_001562744.1| CzcA family heavy metal efflux protein [Delftia acidovorans SPH-1]
 gi|160362746|gb|ABX34359.1| heavy metal efflux pump, CzcA family [Delftia acidovorans SPH-1]
          Length = 1062

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 67/674 (9%), Positives = 168/674 (24%), Gaps = 68/674 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L         + +      +  +D  P                 +++ ++++   
Sbjct: 13  RWLVLLAVFGMAALGIFS----YQRLAIDAVPDI---------------TNVQVQINTQA 53

Query: 65  F------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                      +    + + + L          R   +++T+ F D          V   
Sbjct: 54  PGYSPLETEQRVTYPIETVMAGLPNLEQTRSLSRYGLSQVTVVFKDGTDIYFARQLVGER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRID 172
           +Q     L       L   +T      + +    +            ++           
Sbjct: 114 MQQARESLPDGVSPTLGPISTGLGEIYLWTVEAEENAKKPDGSPYTPMDLREIQDWVIKP 173

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           Q+       +         +      P +L     T A +       N +          
Sbjct: 174 QLRNVPGVTEINSIGGYAKEYLVAPSPEKLSAYGFTLADIVAALQRNNANVGAGYIE--- 230

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                G QYL+    ++ GI                + ++       +         +G 
Sbjct: 231 ---RQGEQYLIRAPGQVKGI--------------ADIREVIVGSAQGQPIRIRDLAEVGL 273

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
              +           +           +     +   I    +          +      
Sbjct: 274 GRELRTGAATDNGREVVLGTVFMLIGENSRKVSQAVDIRMREINRNLPEGVKAVTVYDRT 333

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                + +  K      A LV+++LF+ +   +  L+    I L+++ T   +     + 
Sbjct: 334 NLVDKAIATVKKNLLEGAALVVVILFLFLGNLRAALITALIIPLSMLFTFTGMVYYKVSA 393

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYST 462
            L S+  +  GI   +D  +++ E                      F  +      A   
Sbjct: 394 NLMSLGALDFGII--IDGAVVIVENCVRRLAHAQEARGRPLTRSERFHEVFAAAKEARRP 451

Query: 463 IFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +    +  ++  + +F      G      A+T+ +++  +M  +I+ + A +   +  K 
Sbjct: 452 LLFGQLIIMVVYLPIFALTGVEGKMFHPMALTVVIALAGAMLLSITFIPAAVALFMGDKV 511

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            +  +             +A              +  ++  +              +G  
Sbjct: 512 AEKENRIMGWARQAYSPVLARVMAAPAVVLTAAGVAVALSLLLATRLGSEFAPNLNEGDF 571

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +   A R    S+ +S    +QI +   + F        R       S      +    
Sbjct: 572 AIQ--ALRIPGTSLTQSLEMQIQIENTLKKEFPEIDRVFARTGTAEIASDPMPPNISDGY 629

Query: 640 KKITEIVPLSTIQN 653
             +           
Sbjct: 630 IMLKPKDQWPDPSR 643



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 73/207 (35%), Gaps = 8/207 (3%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              Q    +    + +          + V E  ++  +  +P             +     
Sbjct: 819  PNQVSREDGKRRIVVSANVRGRDIGSFVGEAEQRLESLQLPAGYWTRWGGTFENL-ESAR 877

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            ++ ++ V ++ + + + ++  F      L   T +   +T  +    L  I  ++TA   
Sbjct: 878  QRLLIVVPVALLMVFVLLFAMFGNVRDGLIVFTGIPFALTGGILALWLRDIPLSITAAVG 937

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             + L G +V + +V+    R    L     +  D + +     L   + T++ A +  +P
Sbjct: 938  FIALSGVAVLNGLVMISYFR---TLREEGRNVADAVTEGALTRLRPVLMTALVASLGFVP 994

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAA 809
            MA+    G  V    A  +  GI+ + 
Sbjct: 995  MAIATGTGAEVQRPLATVVIGGILSST 1021



 Score = 46.2 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 86/270 (31%), Gaps = 21/270 (7%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+        +   +L  + +G         +    V L          +R +      
Sbjct: 252 EVIVGSAQGQPIRIRDLAEVGLGRELRTGAATDNGREVVLGTVFMLIGENSRKVSQAVDI 311

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV------IISAIAMLIYIWIRFKWYFALG 695
               +  +  +  + V       L+ K I  V        + + +++++        AL 
Sbjct: 312 RMREINRNLPEGVKAVTVYDRTNLVDKAIATVKKNLLEGAALVVVILFL-FLGNLRAALI 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MR------KNM 748
               + L +  T      + +  NL ++ A+    G  ++  VV+ +  +R      +  
Sbjct: 371 TALIIPLSMLFTFTGMVYYKVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQEAR 428

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
               T       +  +  E     ++  +   +  LP+    G    +    A+ +   +
Sbjct: 429 GRPLTRSERFHEVFAAAKEARRPLLFGQLIIMVVYLPIFALTGVEGKMFHPMALTVVIAL 488

Query: 806 VVAASSSI-FIAAPILLFIYDW-RAKNARI 833
             A   SI FI A + LF+ D    K  RI
Sbjct: 489 AGAMLLSITFIPAAVALFMGDKVAEKENRI 518


>gi|315924144|ref|ZP_07920370.1| protein-export membrane protein SecD [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622546|gb|EFV02501.1| protein-export membrane protein SecD [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 420

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 26/168 (15%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
               VGP +    + + I    I  +A+L+++ + ++    + A   LI+ +   L F +
Sbjct: 240 QATTVGPTLGANSLEQSIKAGAIGILAVLVFMLVFYR-GLGIIADLALIIFVMLDLLFMS 298

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              +   L  +A ++  +G +V+  V++++R+++  +      S +  ++      +   
Sbjct: 299 AMKVTLTLPGIAGMILTVGMAVDANVIIFERIKEEARG---GGSLQSAVNAGFKNAMRSI 355

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           + +++   I+   +   G      FA+ +  GI+++  +++ I   ++
Sbjct: 356 LDSNITTLIAGFVLFFMGTGSAQGFALTLVVGIILSMLTAVVITRQLI 403



 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 121/375 (32%), Positives = 210/375 (56%), Gaps = 29/375 (7%)

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
            + +        ++ +  +E ++  ++ R+D +G+SE+T+ + G++RI +Q+P   D   
Sbjct: 57  NVVLQAKPTKGSKLTNEKMESTVAALKNRVDTLGVSEATVTKQGTNRIRVQIPSISDQQE 116

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
              ++G TA++ F                               K  ++G H+  A A  
Sbjct: 117 ALDMIGKTAQLKF--------------------------KDPNGKTILTGNHVTAAKAVN 150

Query: 262 DPKT---HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQ 318
                   + VV + FD+ G + F   TR  +G+ + + LDG  ++AP +N AI +G+A 
Sbjct: 151 QKNNSGVTQAVVSLKFDKKGTKAFANATRKYLGQTITIKLDGETISAPKVNAAITNGEAV 210

Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378
           I G   ++ A  LA ++R G+LP+KL  V+   VG  LG++S+ +   A   G++ +++F
Sbjct: 211 IEGMKNMDEASNLAELIRGGALPVKLTTVQATTVGPTLGANSLEQSIKAGAIGILAVLVF 270

Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           M+V Y   G++AD ++ + V+L L  +S +  TLTLP IAG++L +G+AVD+N+++ ERI
Sbjct: 271 MLVFYRGLGIIADLALIIFVMLDLLFMSAMKVTLTLPGIAGMILTVGMAVDANVIIFERI 330

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
           +EE R   S+  +++ GF  A  +I DSNIT LIA  VLFF G G+ +GFA+T+ + I++
Sbjct: 331 KEEARGGGSLQSAVNAGFKNAMRSILDSNITTLIAGFVLFFMGTGSAQGFALTLVVGIIL 390

Query: 499 SMFTAISIVRAMMIF 513
           SM TA+ I R ++  
Sbjct: 391 SMLTAVVITRQLIKL 405



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 41/123 (33%), Gaps = 4/123 (3%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE---D 63
              +   +    L   +        +  +      N +S GLDL GG ++VL+       
Sbjct: 9   KYAVGFAVFIAALAFCVYVLFHGITVGIYDIGNINNHMSYGLDLTGGVNVVLQAKPTKGS 68

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGV 122
              N  ++     L++ +   G+   ++ +   N+I +       ++   D +    Q  
Sbjct: 69  KLTNEKMESTVAALKNRVDTLGVSEATVTKQGTNRIRVQIPSISDQQEALDMIGKTAQLK 128

Query: 123 NSK 125
              
Sbjct: 129 FKD 131


>gi|153873939|ref|ZP_02002344.1| Multidrug resistance protein [Beggiatoa sp. PS]
 gi|152069597|gb|EDN67656.1| Multidrug resistance protein [Beggiatoa sp. PS]
          Length = 533

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 64/505 (12%), Positives = 143/505 (28%), Gaps = 25/505 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
              ++++   +  +GL       L       +P                   +       
Sbjct: 19  PIGVIMMALTVIVLGLFSLQTLGLDLLPHIIYPEIR--------------VRVNDPGVPA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   +    +E  +  +          +  + + LSFA  +  +      +  L    
Sbjct: 65  TIMEDKVTRQVEEQLAITEDAIKVQSQTSEGSSSMFLSFAYDKDIDIALRDASTRLDRAK 124

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    +   +      +I  +    +    +   +E    + +Q              
Sbjct: 125 RFLPDTIQAPTIYKLDPSQIPALTLAVSSS--LRDPVELRTWVDKQLSKWFINLPGVAAA 182

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ ++    D  RL  L  T   +       N    G    +     S       
Sbjct: 183 EVGGGLVREIQVLPDQQRLVALGLTLDDVIDALKQTNVESSGGRLYMPENELSTRILGRW 242

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +         +     +          +      G   F       I       L  R+ 
Sbjct: 243 QRV-----EDIAKVRLSPKVSITSLSSNSLLSRRGGDLFLGDIAQIIDTHEDERLRVRLN 297

Query: 304 TAPVIN-QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
             P I        +A       +    +     +          V +        + +  
Sbjct: 298 GIPGIKLSIQKQPQANTVTIVDLVLQRLTWLREQGILSKDVQIDVVDNQATYVQHALNNT 357

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             +    A L ++V+++ + + +  L+   +I L + +T  L++    TL + ++ G+ L
Sbjct: 358 AYSALSGALLAMLVVYLFLGHIRQTLIIGTAIPLAITVTFILMAWADLTLNIMTLGGLAL 417

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-- 480
           GIG+ VD+ I++ E I    + + S   +     S   S I  +  T L A +   F   
Sbjct: 418 GIGMVVDNTIVMLENITRHQQHSDSPTEAAVNAVSEITSAIVAATTTNLAAIIPFLFIVG 477

Query: 481 -GGGAVRGFAITMGLSILISMFTAI 504
             G   R    T+  +++ S+  A 
Sbjct: 478 LVGLLFRELIFTIFAAMVASLVVAF 502



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/228 (14%), Positives = 74/228 (32%), Gaps = 6/228 (2%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ +    E  ++          + +   + Q      V          ++   +    
Sbjct: 279 DIAQIIDTHEDERLRVRLNGIPGIKLSIQKQPQANTVTIVDLVLQRLTWLREQGILSKDV 338

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I   +     +   L       +  + +AML+           L   T + L IT T  
Sbjct: 339 QIDVVDNQATYVQHALNNTAYSALSGALLAMLVVYLFLGHIRQTLIIGTAIPLAITVTFI 398

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
             A   +  N+  +  +   IG  V++ +V+ + +    +    S S  +    +++E  
Sbjct: 399 LMAWADLTLNIMTLGGLALGIGMVVDNTIVMLENI---TRHQQHSDSPTEAAVNAVSEIT 455

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAI-PMAFGIVVAASSSIFIA 816
              V  +     +++P     G  +       + F I  A  +S+ +A
Sbjct: 456 SAIVAATTTNLAAIIPFLFIVG--LVGLLFRELIFTIFAAMVASLVVA 501


>gi|45658916|ref|YP_003002.1| acriflavin resistance [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
 gi|45602161|gb|AAS71639.1| acriflavin resistance [Leptospira interrogans serovar Copenhageni
           str. Fiocruz L1-130]
          Length = 1050

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 62/645 (9%), Positives = 176/645 (27%), Gaps = 57/645 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  ++ +    I   G++  +         D FP+           DL+    +V+   
Sbjct: 23  QNRLFMYLGMVFIFLSGVVSLI-----GLRRDAFPNV----------DLK---QMVISTK 64

Query: 62  EDDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR-FKENIADKVT 116
                   V   +    +E    +          R   + I +  +      E + +++ 
Sbjct: 65  FPGASPADVELRVTYPIEEKLKEIDGIDEIRSFSRNSVSDIDVRVSLEEKDPEKVLNEIR 124

Query: 117 LFLQGVNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +     +L     +   +         I+       +        +  + R    ++ 
Sbjct: 125 RAVDNAMGELPAQVTEKPKMTERKSGSFPILEFSIFGGKDEIELHTTAEFVER----ELE 180

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +   +     +   +     + ++L+Q       +       N +            D
Sbjct: 181 KIQGVARVDVFGKRDREWHILVNANKLKQYSLDLNDIINTIRNRNINLPAGSVDSETAFD 240

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                      + I G               +     +                +     
Sbjct: 241 -----------LRIDGE---------FKNPSEIGKIPTRTNEIFSTVKLEDIARVEDTFE 280

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                 +             K +       +        L           V        
Sbjct: 281 YPRFLAIANGKQGLILSVIKKERSDAIEVADNVHKRLNELSKTYPSGMKTFVLNDEAKRT 340

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
               ++      I   +V  +LF+ + +     +   S+  ++++T ++L     +  + 
Sbjct: 341 KNRLNVVSSNALIGFTIVFGILFLFLDFRTAT-LTSLSLPFSMLMTFSVLPFFDVSFNMI 399

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           S+ G+++ +G+ VD++I+++E I     +      +   G       IF S +T + A +
Sbjct: 400 SMMGLIISLGMLVDNSIVISENIYTYLAEKNDSVAASLRGTVEMIVPIFGSYLTTVTAFL 459

Query: 476 VLFFFGGGAVRGFA---ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F  G   +      + + +++  S+  +   + A +    +      I      +  
Sbjct: 460 PMLFMTGIMGKFIWEIPLVVIVALTASLIESFLFLPARIAAFAKTPNQMKIKSKFRLKMD 519

Query: 533 LIPDCIAIQFMR-----ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            I   I   F +      R      +++  +          +++ +  K  I++ ++   
Sbjct: 520 SIFHSIETNFSKLVSFNIRHKKSSFAVILLLVFGSCGALSQMDFVLFPKEDIEIIMIKAE 579

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               S +    E ++  +   Q    E+      +     +    
Sbjct: 580 FPPTSRIFQTREKMKYMESIVQKIPKEELVSYSTKIGVQQTDPDD 624



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/244 (10%), Positives = 69/244 (28%), Gaps = 9/244 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +    N       +          +             + L     +      V + V K
Sbjct: 256 IPTRTNEIFSTVKLEDIARVEDTFEYPRFLAIANGKQGLILSVIKKERSDAIEVADNVHK 315

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIWIRFKWYFALGAI 697
           ++ E+           V    ++    +  V     +I    +   +++   +  A    
Sbjct: 316 RLNELSKTYPSGMKTFVLNDEAKRTKNRLNVVSSNALIGFTIVFGILFLFLDFRTATLTS 375

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            +L   +  T      F + FN+ ++  ++  +G  V++ +V+ + +   +         
Sbjct: 376 LSLPFSMLMTFSVLPFFDVSFNMISMMGLIISLGMLVDNSIVISENIYTYLAEKN---DS 432

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIF 814
                +   E +     + +    + LPM    G +   I    + +   +  +   S  
Sbjct: 433 VAASLRGTVEMIVPIFGSYLTTVTAFLPMLFMTGIMGKFIWEIPLVVIVALTASLIESFL 492

Query: 815 IAAP 818
               
Sbjct: 493 FLPA 496



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 53/136 (38%), Gaps = 10/136 (7%)

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I   +G F L G   +  A+  ++ L G  VN  +V+ D +  +     +  S  D++ +
Sbjct: 916  IGIVIG-FPLSGKSISFLAMIGIIGLAGVLVNASIVLVDCI--DSIRKDSKASMDDILIE 972

Query: 764  SINETLGRSVYTSMAAFISVLP-MAVWGG--SVIGSFAIPMAFGIVVAASSSIF---IAA 817
            +        + T++     +LP     GG   V+    + + +G+      S+    +  
Sbjct: 973  ASQRRFRPILLTTLTTVAGLLPTAYSLGGSDPVLIPMTLALGWGLGFGTLGSLLYVPVTL 1032

Query: 818  PILLFIYDW-RAKNAR 832
             +   +    + K ++
Sbjct: 1033 SVFNDLTTRFKEKRSK 1048


>gi|222528640|ref|YP_002572522.1| preprotein translocase subunit SecD [Caldicellulosiruptor bescii
           DSM 6725]
 gi|222455487|gb|ACM59749.1| protein-export membrane protein SecD [Caldicellulosiruptor bescii
           DSM 6725]
          Length = 415

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 73/165 (44%), Gaps = 4/165 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E  +  +   II  + + +++ I ++    L A   L+  I   +       
Sbjct: 230 AIGPSLGNEAFKSTLKAGIIGILLVFLFMIIFYRLP-GLVADIALVAYIVILVAIVGYAK 288

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I   L  +A ++   G +V+  ++++ R+++ ++   +  + R  +D      L   + +
Sbjct: 289 ITLTLPGIAGIILSAGMAVDANILIFARLKEELR---SGKTLRAAMDAGFKRALNAVIDS 345

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++   I+ + +   G   I  FA  +  GIVV+  ++I +   +L
Sbjct: 346 NVTTIIAGIVLLFLGTGPIKGFAWTLTIGIVVSFFTAITVTRFLL 390



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 124/407 (30%), Positives = 216/407 (53%), Gaps = 28/407 (6%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              +K +      K    ++ +   +      +E ++++IR R+D     ++T    GS 
Sbjct: 35  PSVQKVIRYGLDLKGGVYIVYEAAKENPTRREMESALQLIRTRLDMRNFYDATATIQGSK 94

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI +++PG +DP    Q +G TA + F                                +
Sbjct: 95  RIRVEIPGVKDPDEAIQYIGRTALIEF--------------------------KGPSGDL 128

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +SG ++    A     T   VV + FD+ G ++F E T+  +G+ + + LDG++++ PV
Sbjct: 129 IVSGRNVVD--AYAQQTTSGYVVALKFDKEGTKKFAEGTKKYLGQNIGIYLDGKLISNPV 186

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I +G+A I G   +E A  LA  ++AG+LP  LN++E + +G  LG+++      A
Sbjct: 187 VRAEIDNGEAVIEGMKDLEEAKTLAQQIKAGALPFALNVIESKAIGPSLGNEAFKSTLKA 246

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + G++L+ LFMI+ Y   GLVAD ++   +++ +A++     TLTLP IAGI+L  G+A
Sbjct: 247 GIIGILLVFLFMIIFYRLPGLVADIALVAYIVILVAIVGYAKITLTLPGIAGIILSAGMA 306

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+NIL+  R++EE R  +++  ++D GF RA + + DSN+T +IA +VL F G G ++G
Sbjct: 307 VDANILIFARLKEELRSGKTLRAAMDAGFKRALNAVIDSNVTTIIAGIVLLFLGTGPIKG 366

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           FA T+ + I++S FTAI++ R ++  II     K I      +   +
Sbjct: 367 FAWTLTIGIVVSFFTAITVTRFLLTSIINTGLFKDIRWYGGKKTREV 413



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 18/121 (14%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 1   MRNNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N      L   ++      I       +      PS   +  I  GLDL+GG ++V E
Sbjct: 1   MQNKSLAKFLIGCLVIAFAFYIVFFGL--EIGTASIPSV--QKVIRYGLDLKGGVYIVYE 56

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
             +++     ++     +R+ L        +     + +I +     +  +     +   
Sbjct: 57  AAKENPTRREMESALQLIRTRLDMRNFYDATATIQGSKRIRVEIPGVKDPDEAIQYIGRT 116

Query: 119 L 119
            
Sbjct: 117 A 117


>gi|163840653|ref|YP_001625058.1| acriflavin resistance plasma membrane protein [Renibacterium
           salmoninarum ATCC 33209]
 gi|162954129|gb|ABY23644.1| acriflavin resistance plasma membrane protein [Renibacterium
           salmoninarum ATCC 33209]
          Length = 1072

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 57/515 (11%), Positives = 153/515 (29%), Gaps = 39/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   + ++       G++ A            FP     + +                  
Sbjct: 11  NRALIALITIFAAVFGVISAGSLKQELIPSIEFPQISVISAM--------------PGAS 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V+  +    +   + ++       + R   + I+L+F+     +   +++   +   
Sbjct: 57  PEVVDAQISRPLETALNAVENLDSSSSTSRSGVSTISLTFSYGTNLDRARNQIDRAIANA 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  D +   +  +      I+    + D       E + ++ R  + ++   +    
Sbjct: 117 RQQLPTDVQPQAIAGSVSD-FPILYMAVSSD---KSLAELNSDLQRIAVPKVLKVDGVRG 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    D ++L         +S                 +    S      
Sbjct: 173 ADVTGANRQHIEIMPDVAKLAAAGLPITSISDALKNNGALIPAGSITDQGKSLSMQIGSP 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+    +                    + +   + GA      +  ++            
Sbjct: 233 VDSLDAVKA------------------LPLGGAKAGAAPSTIGSIADVSLQDNPTTSITR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      + K +            L   L++         +          S    
Sbjct: 275 TNGKPTLALSVTKKPEADTVTVSHAINALLPELKSDLGSNVSFTMVFDQAPFIEKSIKDL 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +  G  + ++ + +L  +  +V   SI L++++TL  L     +L + ++  + +
Sbjct: 335 GIEGLLGLGFAVAIILIFLLSIRSTIVTAISIPLSLLITLIGLWASKYSLNILTLGALTI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IG  VD +I+V E I+      +    ++          +  S +T +     + F G 
Sbjct: 395 AIGRVVDDSIVVIENIKRHQSYGEDKLTAITAAIKEVAGAVTASTLTTVAVFAPIAFVGN 454

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   R FA+T+ ++++ S+  +++IV  +  + 
Sbjct: 455 IAGELFRPFALTVTIALIASLLVSLTIVPVLAYWF 489



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 81/232 (34%), Gaps = 6/232 (2%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           +L+      I+  N        V  + +         +  ++ +  +++    +      
Sbjct: 263 SLQDNPTTSITRTNGKPTLALSVTKKPEADTVTVSHAINALLPELKSDLGSNVSFTMVFD 322

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
             P I + +   GI G++    A+ I +         +    ++ L +  TL        
Sbjct: 323 QAPFIEKSIKDLGIEGLLGLGFAVAIILIFLLSIRSTIVTAISIPLSLLITLIGLWASKY 382

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
             N+  + A+   IG  V+D +VV + ++   +  +        I  +I E  G    ++
Sbjct: 383 SLNILTLGALTIAIGRVVDDSIVVIENIK---RHQSYGEDKLTAITAAIKEVAGAVTAST 439

Query: 777 MAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +       P+A  G   G +   FA+ +   ++ +   S+ I   +  +   
Sbjct: 440 LTTVAVFAPIAFVGNIAGELFRPFALTVTIALIASLLVSLTIVPVLAYWFLR 491



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 63/157 (40%), Gaps = 6/157 (3%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
            +I +         L  + ++    T  +G   +  +   L ++  +L L+G  V + +V+
Sbjct: 877  VIMVATFKSLVQPLILLVSIPFAATGAIGLLLITRVPVGLPSLIGMLMLVGIVVTNAIVL 936

Query: 741  YDRMRKNMKL--YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI- 794
             D + ++ K        +  + I+      L   + T++A   ++ PMA+    GG  I 
Sbjct: 937  IDLINQSRKSSPGQAGKNVAEAIEYGARHRLRPILMTALATVFALTPMALGVTGGGGFIS 996

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               AI +  G++ +   ++ +   +   +   R +  
Sbjct: 997  QPLAIVVVGGLISSTVLTLILVPALYRLVEGGRERRR 1033


>gi|299148015|ref|ZP_07041078.1| heavy metal efflux pump, CzcA family [Bacteroides sp. 3_1_23]
 gi|298514198|gb|EFI38084.1| heavy metal efflux pump, CzcA family [Bacteroides sp. 3_1_23]
          Length = 1032

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 74/679 (10%), Positives = 183/679 (26%), Gaps = 48/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   +V    ++   G   A+   +        P+ +     +       G       
Sbjct: 10  LHNRLVVVCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L V+  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 VVSESLPVNVGKPTLGPQSSILGEMLIIGLTADSTSM--LDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +   + DP R+R    +  ++       N +  G +             
Sbjct: 174 AQVAVLGGDIKEYQIQLDPERMRHYGISMGEVMAVTQDMNLNANGGVLYEFGNEYIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++    +               V                   IG     +   
Sbjct: 234 LSTSKTEQLGKAVVKTVNNFPVTLEDIANVT------------------IGPKAPKLGTA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +   +    A  +   T +    L  + +     +K++    R       S  
Sbjct: 276 SERGKSAVLMTVTKQPATSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+
Sbjct: 336 NVKKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+    +        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVYKRLRENRLKAEAERLSTLEVVFNASKEVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + V LFF  G   R      +   +++  S   A+++   +  +++   K          
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGVAFIVALFASTIVALTLTPVLCSYLLGSNKTNKELKEAPV 515

Query: 530 RFFLIPDCIA---IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             ++               R        LF +                 +G   + + + 
Sbjct: 516 ARWMKGIYEKALTWVLAHKRVTLGSTIGLFVVALGVFFTLGRSFLPSFNEGSFTINISSL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   ++            R +            +E   +      
Sbjct: 576 PGISLEESNKMGHRAEELLMTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSR 635

Query: 647 PLSTIQNTEIVGPKISREL 665
                   E +G      +
Sbjct: 636 SELVADVREKLGTITGANI 654



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 87/266 (32%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      ++++     +     +                         +  + 
Sbjct: 248 KTVNNFPVTLEDIANVTIGPKAPKLGTASERGKSAVLMTVTKQPATSTLELTDKLEASLK 307

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         L 
Sbjct: 308 DLQKNLPPDVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTLI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN-MKL 750
           ++ TL L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +K 
Sbjct: 365 SLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRLKA 424

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +S  +++  +  E     + +++   +S +P+    G    ++    +     +  
Sbjct: 425 EAERLSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGVAFIVALFA 484

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N  +
Sbjct: 485 STIVALTLTPVLCSYLLGSNKTNKEL 510



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 100/268 (37%), Gaps = 11/268 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++  + N  VD +  R    S     +S    +      V+ +     +VA  
Sbjct: 766  VKDDARDEIEKIRNLMVDTNDGRKVPLSYVAEVVSAMGPNTINRENVKRKIVISANVADR 825

Query: 633  RVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +  +V      I     +        G +   E      + +      ++I++ +  ++
Sbjct: 826  DLRSVVNDIQKRIDTSVQLPEGYHIEYGGQFESEQAASRTLALTSFISIVVIFLLLYNEF 885

Query: 691  YFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +  L L +    G FAL     E ++ A+   ++L G +  + +++      N
Sbjct: 886  RSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHY--N 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAF 803
                   ++  D + +   + L   + T++++ ++++P+A+ G      +    A  +  
Sbjct: 944  HLQKEEGLNVYDSVIQGSLDRLNPILMTALSSALALIPLALAGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++ +   + FI   + L ++  +A+ +
Sbjct: 1004 GLLTSTFLNGFIVPIVYLMMHRKKAQKS 1031


>gi|291513904|emb|CBK63114.1| Cation/multidrug efflux pump [Alistipes shahii WAL 8301]
          Length = 1005

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 68/604 (11%), Positives = 169/604 (27%), Gaps = 46/604 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MRN     ++   +   G+         +     FP    +  + +G         V   
Sbjct: 1   MRNFRITFLIVGCLFVFGIYALA-----RIPKQEFPEYTIRQGVVVG---------VYPG 46

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN--KITLSF-ADSRFKENIADKVTL 117
              + V   L    ++     K+      +         + +    D   K+ +  KV  
Sbjct: 47  ATAEEVEEQLAKPLEQFLMTYKEVKRAKTTSTSQNGMCYVMVELNDDVNDKDEVWSKVKH 106

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            L     +L       +         +++++  +  +          +      D++   
Sbjct: 107 GLAAFKMQLPAGVAAVVTNDDFGDTSALLITLESDTRSYRELKGYMDD----LSDRLRRI 162

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           ES            Q+    DP RL         +S        +  G            
Sbjct: 163 ESVSNLRPYGVQQEQISVYADPERLAAYGIGEKTLSAALAAQGLTPLGGSVSNAE----- 217

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                                A       +    I + +             + +     
Sbjct: 218 --------------TETPIHIAPSLAGEREVAEQIVWSDPEGHVLRVKDVARVVREYDDP 263

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGI-LAAMLRAGSLPIKLNIVEERNVGADL 356
                             +A  +           L A +                     
Sbjct: 264 DSYIRNNGHRCVLLSLEMQAGNNIVEYGREVDEVLHAFIEEELPADVSVQRIADQAKVVG 323

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S   +     +   ++++V+ M++   +  +VA  +I ++  +++ ++ L G  L   +
Sbjct: 324 DSVHSFLRDLFVAMAIIIVVM-MLLFPLRSAIVAALTIPMSTFISVGMMYLCGIPLNTVT 382

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +A +V+ +G+ VD++I+V +   +   +  S + +        + ++  + I   +    
Sbjct: 383 LAALVVVLGMIVDNSIVVIDGYLDYLGRGHSRWFAAVESAREFFPSLLLATICICMIFYP 442

Query: 477 LFF----FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           + F      G  +  F  T+ +++++S+  A+ ++  + I II    ++       +   
Sbjct: 443 ILFTMTGMMGDFLTWFPWTITINLMVSLLLAVMVIPFLEILIIPAVHVRRDGRRSFTDRV 502

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                  + +     W        S+    L+ T      + F    Q  V      D  
Sbjct: 503 HDVYRRVLAWTFRHGWLTISLGAASVVVSLLIATQLKFRMVPFADRDQFAVEIYLRPDTP 562

Query: 593 VVRS 596
           + R+
Sbjct: 563 LERT 566



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/243 (11%), Positives = 82/243 (33%), Gaps = 11/243 (4%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V ++    +  V+     ++  D          +  V L  +             V + +
Sbjct: 239 VWSDPEGHVLRVKDVARVVREYDDPDSYIRNNGHRCVLLSLEMQAGNNIVEYGREVDEVL 298

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVG----VIISAIAMLIYIWIRFKWYFALGAIT 698
              +      +  +       +++   +      + ++   +++ + + F    A+ A  
Sbjct: 299 HAFIEEELPADVSVQRIADQAKVVGDSVHSFLRDLFVAMAIIIVVMMLLFPLRSAIVAAL 358

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ +    ++G   L GI  N   +AA++ ++G  V++ +VV D     +    +     
Sbjct: 359 TIPMSTFISVGMMYLCGIPLNTVTLAALVVVLGMIVDNSIVVIDGYLDYLGRGHSRW--- 415

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAV----WGGSVIGSFAIPMAFGIVVAASSSIF 814
               +S  E     +  ++   +   P+        G  +  F   +   ++V+   ++ 
Sbjct: 416 FAAVESAREFFPSLLLATICICMIFYPILFTMTGMMGDFLTWFPWTITINLMVSLLLAVM 475

Query: 815 IAA 817
           +  
Sbjct: 476 VIP 478



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 82/244 (33%), Gaps = 9/244 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              +++    +SV    +  ++      +         + +           R+   + + 
Sbjct: 762  TYVSSPVPGVSVPLRQIADVEPAWSQSKIVHRNGMRCITVTADLKRGANAMRMTSRISRM 821

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVG-VIISAIAMLIYIWIRFKWYFALGAITTL 700
            + + +PL     TE+ G           I   + IS + +  +I + F+  F +  +   
Sbjct: 822  LKDEIPLPPGVETELGGAHEFDAETLPPIAAGLSISLVIIFFFILVNFR-KFGITLVVMA 880

Query: 701  ILDITKTLGFFA---LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             + +    G      +      LT+V   +TL+G  V + +++Y       K      S 
Sbjct: 881  SMSLCL-FGAMVGLWIADFTIGLTSVLGFITLLGMIVRNVILMYQ--HAEDKRKVCHWSG 937

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +     +    +     T+    + V+PM + G +      + +  G  + +   +    
Sbjct: 938  KLAAYDAGKRRMVPIFLTTATTAVGVVPMMLGGSTFWAPVGVTIFAG-GIGSLILVVTIL 996

Query: 818  PILL 821
            P+L 
Sbjct: 997  PVLY 1000


>gi|330992753|ref|ZP_08316697.1| Multidrug resistance protein mdtC [Gluconacetobacter sp. SXCC-1]
 gi|329760231|gb|EGG76731.1| Multidrug resistance protein mdtC [Gluconacetobacter sp. SXCC-1]
          Length = 1100

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 85/685 (12%), Positives = 190/685 (27%), Gaps = 43/685 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      ++   +   G +           +   P+      I +     GG+       
Sbjct: 9   KRPIGTTLIVIGMMIAGAI-----GYWLLPVSDLPNVDLP-VIQVQAQQAGGT------- 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +             Q  I L F  SR   + A  V   +  
Sbjct: 56  -PEQIASTIAEPLERHLGTIAGLTEMTSQSVSGQVSIALQFDTSRNINSAARDVQAAIVA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    ++N            V+    +        +            +       
Sbjct: 115 ARADLPATLRQNPTYVEANTAGMPVMV-LALTSDTRTPAQVYDVATNVLEQHLSQINGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q L     L  +  E +P  L +       +       N +           R       
Sbjct: 174 QLLLGGAALPAVRVELNPLALFKYGIGFEDIRAALSSANANTPKGFLNRGRQRLILQTND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    ++ G                    +      +R         +   +  V +G 
Sbjct: 234 QVHGAKDLKG--------------------LIVAYRSSRPVRLEDVAQVTDGVENVENGG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    AI   +A  +   TI         L+A         V          + + 
Sbjct: 274 FFNRRPAVLAIVFPRAGANVVQTIAQIRAQFPALKAALPADVELHVGMDRSATIRAALAD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T  +   LV+ V+ + +   +  +V    I  +++ T  ++ L+  +L   S+  + 
Sbjct: 334 TKATLVMSVLLVVGVVLVFLRSPRTTIVPAIVIPASLVTTFGVMKLMDYSLDSLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I     +  +   ++  G      T+   +++ +   + +   G
Sbjct: 394 IATGFVVDDAIVVIENISRHMEQGATRATAVLQGAQEVAFTVLSVSVSLVAVFLPILMLG 453

Query: 482 GGAV---RGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
           G        FA+T+ +++L+SM  ++++   M   I      R  +  +I      R   
Sbjct: 454 GLIGSLLHEFAVTISVTVLVSMGLSLTLTPMMCARILPPGGPRPDRPPTIWSRLSDRLER 513

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +   + R+    +    L  +     +   GL + I  KG             L  
Sbjct: 514 GFAYVEDAYGRSLSRALYHRRLVLLSLPATVGAMGLLFVIMPKGLFPTEDTGMMMAHLVA 573

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            ++      +G +        +N  V+           T    +  +   +      I  
Sbjct: 574 DQATSFQDMMGKVDEVEKRVLENKQVQAVTGFIGGRNATNQANIFLELTDKAERTIPIGQ 633

Query: 654 TEIVGPKISRELIRKGIVGVIISAI 678
           T       + +++    + ++ S +
Sbjct: 634 TLADLAHRTHDIVGARFIAMLPSLL 658



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 51/127 (40%), Gaps = 6/127 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +     +   +  T G   L     +  ++ A+    G+ V+D +VV + +    +    
Sbjct: 360 IVPAIVIPASLVTTFGVMKLMDYSLDSLSLMALTIATGFVVDDAIVVIENI---SRHMEQ 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +    + +   E     +  S++     LP+ + G   GS++  FA+ ++  ++V+  
Sbjct: 417 GATRATAVLQGAQEVAFTVLSVSVSLVAVFLPILMLGGLIGSLLHEFAVTISVTVLVSMG 476

Query: 811 SSIFIAA 817
            S+ +  
Sbjct: 477 LSLTLTP 483



 Score = 46.6 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 110/326 (33%), Gaps = 12/326 (3%)

Query: 505  SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
             ++  +  +      ++ + ++                + +       +   S  S    
Sbjct: 756  VVMNVLPKYWDNADILQQLWVSTSGGTASGSTQSNTITVTSASTTSTTTSSLSSQSFANQ 815

Query: 565  FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQ 624
              + L  G     G  +   A   V LSVV S   +     ++ Q           L   
Sbjct: 816  IQNSLAGGSGASSGSAVSSTAETMVPLSVVSSMQSATMPLSVNHQGQSLAATLSFNLASG 875

Query: 625  PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
               S A   + E   K             T       +        + ++ +  A+ + +
Sbjct: 876  ASMSDAVRIINEETVKLQIPASVHGHFAGTAAQFQSSAS----DEPLLIVAALGAVYLVL 931

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
             I ++ +   L  ++TL       L    LFG EF+L A+  ++ LIG    + +++ D 
Sbjct: 932  GILYESYVHPLTILSTLPSAGVGALLALYLFGQEFDLIALIGLILLIGIVKKNAIMLVDF 991

Query: 744  -MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
             + +     T +   +D I  +        + T++AA +  LP+ V   +G  +     I
Sbjct: 992  AITEER---THNRPAQDAIHTACLLRFRPIMMTTLAAAMGALPLVVGNGYGAELRRPLGI 1048

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYD 825
             +  G++ +   +++    + L++  
Sbjct: 1049 AIMGGLLFSQILTLYTTPVVYLYLDR 1074


>gi|254473722|ref|ZP_05087117.1| heavy metal efflux pump, CzcA family [Pseudovibrio sp. JE062]
 gi|211957108|gb|EEA92313.1| heavy metal efflux pump, CzcA family [Pseudovibrio sp. JE062]
          Length = 1060

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 75/633 (11%), Positives = 171/633 (27%), Gaps = 41/633 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   +++   M+   G+       L ++ +D  P       I              +  
Sbjct: 11  KNRVIVLMAAVMLTLGGIWA-----LKETPVDAIPDLSDVQVI---------IKTPYDGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +          +              + + + F DS        +V  +L  
Sbjct: 57  APQVIEDQVTYPIATAMLSVPDVIDVRGFSFYGDSYVYVVFKDSTDLYWARSRVLEYLAQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V +KL       L    T                     +           ++       
Sbjct: 117 VGAKLPDGVTPELGPDATGVGWIYQY-ALIDRTGNHDLAQLRSLQDWWLKFELQTVSGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     DP++LR    T  ++       N    G +  +           
Sbjct: 176 EVATIGGMVKQYQVVVDPNKLRAYGVTLPELMSTIENANRETSGSVIEMAEAEYMVRATG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   ++                    + I  +E GA    E   +    P        
Sbjct: 236 YIQSIEDLK------------------EIPIKVNERGAALTLEDVAEIRLGPQMRRGVAD 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +        A+   +   +   TIE        L+         +      G    +   
Sbjct: 278 LNGEGDSVGAVVIMRWGENPLRTIEGVTAKLNELKPNLPEGVEIVTTYDRSGVIERAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V++V  + +L+ +  LV   S+ L ++  L ++ L G    + S+ GI 
Sbjct: 338 LTQKLTEEFLVVVLVCAIFLLHLRSSLVILISLPLGILTALLVMRLQGVNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREEN----RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           + IG  VD+ I++ E +          +++ +  +    S     +F S     I+ + +
Sbjct: 398 IAIGAMVDAAIVMIEAMHRRLEKEPDPDKNRWKVVAECCSEVGPALFYSLAIITISFLPV 457

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G   +  A T   ++  +   +I++V  +M + +R +               +
Sbjct: 458 FVLEAQEGRLFKPLAFTKTYAMAAATILSITLVPVLMGYFVRGRIHPEAKNPVNRFCIAL 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSV 593
                   +      +  +++     +  L            +G           V +  
Sbjct: 518 YRPALSLVITWPKTTIVFALVLVASILVPLNRIGTEFMPELKEGDFLYMPSLYTGVSIGK 577

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            R  L+      +           L R +    
Sbjct: 578 AREVLQQTDRMIMQVPEVQTVHGKLGRAETATD 610



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 87/287 (30%), Gaps = 20/287 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I L +        +    + +   +   + L  V         G I  +N     
Sbjct: 756  LERYPINLRYPQDWRSTPEQLEKLPVVTPSGAHIPLGAVSDVKIVDGPGMIRSENARPTG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               + ++ +            +            T         ++   L         +
Sbjct: 816  FVFIDIEGRDLGGYVSEAQQLVASNVQIPAGYSITWSGQYEYIERVQERLQLVAP----V 871

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF--ALFGIEFNLTAVAAVLTLIGYS 733
            + + + + +++ F       AI    L +  T G +     G + ++  +   + L G +
Sbjct: 872  TLLIITLMLFLAFN-RVGEVAIILTSLPVALTGGIWFVYALGFDLSIAVLVGFIALAGVA 930

Query: 734  VNDKVVVY--------DRMR--KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   +V+          R+   +      T+    + + +     L   V T  A F  +
Sbjct: 931  VETAIVMLLYLNLSWDKRIETAQATHQQLTTKDILESVVEGALLRLRPKVMTVAAIFAGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +P+ +    G  ++   A PM  G++ A   ++F+   I +     R
Sbjct: 991  VPIMLGSATGSEIMKRIAAPMVGGMITATLLTLFVIPAIYVLWKKAR 1037



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 4/156 (2%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + +L+          +L  + +L L I   L    L G+  N+ ++  +   IG  V+
Sbjct: 346 FLVVVLVCAIFLLHLRSSLVILISLPLGILTALLVMRLQGVNANIMSLGGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS-- 792
             +V+ + M + ++        R  ++ +  +E      Y+     IS LP+ V      
Sbjct: 406 AAIVMIEAMHRRLEKEPDPDKNRWKVVAECCSEVGPALFYSLAIITISFLPVFVLEAQEG 465

Query: 793 -VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    A    + +  A   SI +   ++ +    R
Sbjct: 466 RLFKPLAFTKTYAMAAATILSITLVPVLMGYFVRGR 501


>gi|134301316|ref|YP_001121284.1| RND efflux transporter [Francisella tularensis subsp. tularensis
           WY96-3418]
 gi|134049093|gb|ABO46164.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family
           [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 1037

 Score =  124 bits (311), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 150/524 (28%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G+         +  + ++P                         
Sbjct: 9   RRPVLSLSISFMIIVVGVGS-----FFKLQVRQYPYIDSATIT---------VTTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +  F+    +      K             + IT+         ++  +V   +  
Sbjct: 55  NPATIQAFVTRPLEAAVGSSKGIDYMTSESALGTSTITVYVKLGYNTNDVLSEVVQNVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  D     +          ++          +  E S  I  +   ++       
Sbjct: 115 ILNQLPQDAYSPAIKLNPADNFPSLILAFTSK--TMNTSEISAYINSELTPKLLAEGGLS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    + +R+ +   T  +++      +    G      +L  +     
Sbjct: 173 EINVWGNMPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYT----- 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  T +   ++   +   +         +           
Sbjct: 228 ---------------LNPETSMSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A      + +    +         ++A         V   +      S   
Sbjct: 273 YFDGKNAVLAGAVVSPEENPLDVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V IV+F+ +   +  +V   +I L++I +  L+S++G ++ L ++  ++
Sbjct: 333 VLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +    F +   G     + +    +T ++    +   G
Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G     FA ++  ++LIS   A ++   M   ++  + M S
Sbjct: 453 GFTGQLFTEFAYSLAGAVLISGIVAYTLSPMMCSKVLNREMMSS 496



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 104/331 (31%), Gaps = 14/331 (4%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           +           I  N             +         V          +        +
Sbjct: 174 INVWGNMPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYTLNPETS 233

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                +    +   ++  +      + +E       S   FDG+   L      P ++  
Sbjct: 234 MSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSVYFDGKNAVLAGAVVSPEENPL 293

Query: 631 QT-----RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                  + L  +K  +   + +    N+ +       E++   +  VII +I M +++ 
Sbjct: 294 DVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDEVLHTLLEAVIIVSIVMFLFLG 353

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +  I  + L I  +    ++ G   NL  + A++  IG  V+D +VV + + 
Sbjct: 354 ---SLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMILAIGLVVDDAIVVLENI- 409

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +       K   E     +  ++   +   P+ + G   G +   FA  +A
Sbjct: 410 --YRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMGGFTGQLFTEFAYSLA 467

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++++   +  ++  +   + +    ++++
Sbjct: 468 GAVLISGIVAYTLSPMMCSKVLNREMMSSKL 498



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 93/295 (31%), Gaps = 14/295 (4%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                      S  ++     N  +  +    + + ++    L      L +L       Q
Sbjct: 732  YINYFFLKGYSFQVIPQLARNEMLTQEQLGNIYIRSDEMNKLFDSEVPLSALVTFKTEGQ 791

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                     +                + ++   + +  +     +        + +    
Sbjct: 792  PLTLNTFQQLNASTISAVMAPGITQGQAIEYVQSVVKSMLPEGFSYNFSGSARQYIENGN 851

Query: 670  IVGVIISAIAMLIYIWIR-----FKWYFALGAITTLILD-ITKTLGFFALFGIE---FNL 720
             + V  +   +LI++ +      F+    +     + +      L      G      N+
Sbjct: 852  TMMVAFAFAIVLIFLALSAQFESFRDSLVILVTIPMAISGALIPLYVGQYLGASWASLNI 911

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 ++TLIG      ++V +    N       ++  D I  S ++ L   + T  A  
Sbjct: 912  YTQLGLVTLIGLISKQGIMVVE--FANHLQKHNGMNKYDAIVTSSSQRLRPILMTVSAMV 969

Query: 781  ISVLPMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + V+P+    G   I      + ++ G+V+ A  S+F+   + ++I   ++K+ +
Sbjct: 970  VGVIPLVTSSGAGAISRNCIGVVISSGLVIGAIFSLFVLPVVYMYIASDKSKSVK 1024


>gi|319794721|ref|YP_004156361.1| heavy metal efflux pump, czca family [Variovorax paradoxus EPS]
 gi|315597184|gb|ADU38250.1| heavy metal efflux pump, CzcA family [Variovorax paradoxus EPS]
          Length = 1063

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/601 (9%), Positives = 144/601 (23%), Gaps = 62/601 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L  +      + +      +  +D  P                   + +      
Sbjct: 13  RWLVLLAVLGMAALGVFS----YQKLPIDAVPDITN-------------VQVQINTSAPG 55

Query: 65  FV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +    + + + L          R   +++T+ F D          V   +Q
Sbjct: 56  YSPLEAEQRVTYPIETVMAGLPGLQQTRSLSRYGLSQVTVIFEDGTDIYFARQLVNERIQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRIDQI 174
                +       +   +T      + +          D       +           Q+
Sbjct: 116 SARESMPSGISPVIGPISTGLGEIYLWTVEAEEGAKKPDGKPYTPTDLREIQDWIIKPQL 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
              +   +         +     DP++L     T   +       N +        R  +
Sbjct: 176 RNVKGVTEINSIGGYDKEYQIAPDPAKLLAHGLTMTDLVTALERNNANVGAGYIEKRGEQ 235

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   V+   +I                     ++     G           +G   
Sbjct: 236 YLIRAPGQVKSVEDIG--------------------NVILGNAGGIPLRVQDVAEVGIGQ 275

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          +        
Sbjct: 276 ELRTGAATDNGREVVLGTVFMLIGENSRTVSQAVDKKMQEVNRTLPAGVKAVTVYDRTVL 335

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ +LF+ +   +  L+    I L+++ T   +     +  L
Sbjct: 336 VDKAIATVKKNLFEGAVLVIAILFLFLGNIRAALITALVIPLSMLFTFTGMVNQKVSANL 395

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIF 464
            S+  +  GI   +D  +++ E                      F  +      A   + 
Sbjct: 396 MSLGALDFGII--IDGAVVIVENCVRRLAHAQAKHGRPLTRSERFHEVFAASQEARRPLL 453

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +  +I  + +F      G      A T+ ++++ +M  +I+ + A +   I  K  +
Sbjct: 454 FGQLIIMIVYLPIFALTGVEGKLFHPMAFTVVIALVGAMILSITFIPAAVALFIGNKVSE 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +A             ++   +  +              +G   +
Sbjct: 514 KENRLMTWAKRGYEPLLARVMTAKPLVITVAAVAVVLSGLLATRLGTEFVPSLSEGDFAI 573

Query: 582 G 582
            
Sbjct: 574 Q 574



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 67/206 (32%), Gaps = 6/206 (2%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              Q         + +          + V E         +P             ++    
Sbjct: 822  PNQVSRENGKRRIVVSANVRGRDLGSFVAEAEAAMRQVTIPTGYWTVWGGQYENLASATQ 881

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            R  +V  +   +   +   +       L   T +   +T  +    L  I  +++A    
Sbjct: 882  RLQVVVPVSLLLVFTLLFAMFGNLKDGLLVFTGIPFALTGGIVALWLRDIPLSISAAVGF 941

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + L G +V + +V+   +R N++     +   + I +     L   + T++ A +  +PM
Sbjct: 942  IALSGVAVLNGLVMISFIR-NLREG--GLPLDEAIREGALTRLRPVLMTALVASLGFVPM 998

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAA 809
            A+    G  V    A  +  GI+ + 
Sbjct: 999  AIATGTGAEVQRPLATVVIGGILSST 1024



 Score = 45.8 bits (106), Expect = 0.033,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 77/255 (30%), Gaps = 19/255 (7%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++  + IG         +    V L          +R +     K  + V  +     +
Sbjct: 266 QDVAEVGIGQELRTGAATDNGREVVLGTVFMLIGENSRTVSQAVDKKMQEVNRTLPAGVK 325

Query: 656 IVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V       L+ K I  V       + + + I          AL     + L +  T   
Sbjct: 326 AVTVYDRTVLVDKAIATVKKNLFEGAVLVIAILFLFLGNIRAALITALVIPLSMLFTFTG 385

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTTSISFRDL-----IDK 763
                +  NL ++ A+    G  ++  VV+ +    R                    +  
Sbjct: 386 MVNQKVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQAKHGRPLTRSERFHEVFA 443

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPI 819
           +  E     ++  +   I  LP+    G    +    A  +   +V A   SI FI A +
Sbjct: 444 ASQEARRPLLFGQLIIMIVYLPIFALTGVEGKLFHPMAFTVVIALVGAMILSITFIPAAV 503

Query: 820 LLFIYDW-RAKNARI 833
            LFI +    K  R+
Sbjct: 504 ALFIGNKVSEKENRL 518


>gi|111022141|ref|YP_705113.1| hypothetical protein RHA1_ro05174 [Rhodococcus jostii RHA1]
 gi|110821671|gb|ABG96955.1| possible membrane protein [Rhodococcus jostii RHA1]
          Length = 1004

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 68/554 (12%), Positives = 167/554 (30%), Gaps = 52/554 (9%)

Query: 320 SGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFM 379
           +          +        + ++L  ++  +   +       +    +    V I+LF 
Sbjct: 142 NDTEVTANFRDVKDEFYIDGVDVQLAGLQPVSGALNDTMAKDIRRMEILAIPAVGILLFF 201

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI---GLAVDSNILVNE 436
           +        +      L V+    ++ L+     + S    V+ +   GLA+D  + +  
Sbjct: 202 VFGGVVAAALPLIIGGLTVVGANGVVRLITNFTEVNSFVAPVVSLVGLGLAIDYGLFIVS 261

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           R REE  +      ++      +  T+  S    + +   L  F  G ++  A     ++
Sbjct: 262 RFREEMAEGYDTRSAVRRTVMTSGRTVVFSATMIVASLGGLLLFPQGFLKSVAYGAIATV 321

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD---CIAIQFMRARFWGVGIS 553
            ++  T+I+I+ A++  + +     S+D    ++     +      +     R       
Sbjct: 322 GLAALTSITILPAILGILGKRIDALSLDRFRQTKNTEEIEASIWGRLTRWVMRNPLKVTI 381

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQ-------------------------LGVLANRP 588
            +     + ++   G+ +G   +  +                          L V     
Sbjct: 382 PIVVGLLLLIVPLTGIKFGGINETYLPPDSSTRAAQEQFDEIFPNLRTEPVKLVVSDADN 441

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             L  +             F      K+ +V L+    D       ++ ++   +     
Sbjct: 442 KALGQIIKEASGAPGLIERFTPEGAAKDGVVVLKAGLVDRNESKPTIDYLRAMDSPDGVQ 501

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
             +  T  +       L+      VI   +   + +++ F      + A     L +  T
Sbjct: 502 VLVGGTPAIEQDSIAALLDHLPTMVISVLVLTTLLMFLTFGSLVLPIKAALMSALGLGST 561

Query: 708 LGFFALFGIE--------FNLTAVAA------VLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           LG      I+        F    + +      +  + G S + +V +  RM +       
Sbjct: 562 LGILTWIFIDGHGSEWLNFTPGPIMSPVLVLIIAIVYGLSTDYEVFLLSRMVE---ARAQ 618

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-GSVIGSFAIPMAFGIVVA-ASS 811
             S  + I      T GR +  +    I V     +    ++   +  M   +++     
Sbjct: 619 GASTTESIRIGTAHT-GRIITAAALILIVVTGAFGFSELVMMKYISYGMIAALIIDATLI 677

Query: 812 SIFIAAPILLFIYD 825
            +F+    +  + D
Sbjct: 678 RMFLVPATMKLLGD 691



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 84/221 (38%), Gaps = 13/221 (5%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
            +++ +  +     +    T     VK +         +   + V   ++  + +     
Sbjct: 128 DKQHAIESIAIVGDNDTEVTANFRDVKDEFYIDGVDVQLAGLQPVSGALNDTMAKDIRRM 187

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT----AVAAVLT 728
            I++  A+ I ++  F     + A   LI+     +G   +  +  N T     VA V++
Sbjct: 188 EILAIPAVGILLFFVFGGV--VAAALPLIIGGLTVVGANGVVRLITNFTEVNSFVAPVVS 245

Query: 729 LIGYS--VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS-VLP 785
           L+G    ++  + +  R R+ M         R  + +++  T GR+V  S    ++ +  
Sbjct: 246 LVGLGLAIDYGLFIVSRFREEMAE---GYDTRSAVRRTV-MTSGRTVVFSATMIVASLGG 301

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           + ++    + S A      + +AA +SI I   IL  +   
Sbjct: 302 LLLFPQGFLKSVAYGAIATVGLAALTSITILPAILGILGKR 342


>gi|293373103|ref|ZP_06619468.1| heavy metal efflux pump, CzcA family [Bacteroides ovatus SD CMC 3f]
 gi|292631922|gb|EFF50535.1| heavy metal efflux pump, CzcA family [Bacteroides ovatus SD CMC 3f]
          Length = 1032

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/679 (10%), Positives = 183/679 (26%), Gaps = 48/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   +V    ++   G   A+   +        P+ +     +       G       
Sbjct: 10  LHNRLVVVCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L V+  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 VVSESLPVNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +   + DP R+R    +  ++       N +  G +             
Sbjct: 174 AQVAVLGGDIKEYQIQLDPERMRHYGISMGEVMAVTQDMNLNANGGVLYEFGNEYIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++    +               V                   IG     +   
Sbjct: 234 LSTSKTEQLGKAVVKTVNNFPVTLEDIANVT------------------IGPKAPKLGTA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +   +    A  +   T +    L  + +     +K++    R       S  
Sbjct: 276 SERGKSAVLMTVTKQPATSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+
Sbjct: 336 NVKKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+    +        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVYKRLRENRLKAEAERLSTLEVVFNASKEVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + V LFF  G   R      +   +++  S   A+++   +  +++   K          
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGVAFIVALFASTIVALTLTPVLCSYLLGSNKTNKELKEAPV 515

Query: 530 RFFLIPDCIA---IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             ++               R        LF +                 +G   + + + 
Sbjct: 516 ARWMKGIYEKALTWVLAHKRVTLGSTIGLFVVALGVFFTLGRSFLPSFNEGSFTINISSL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   ++            R +            +E   +      
Sbjct: 576 PGISLEESNKMGHRAEELLMTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSR 635

Query: 647 PLSTIQNTEIVGPKISREL 665
                   E +G      +
Sbjct: 636 SELVADVREKLGTITGANI 654



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 87/266 (32%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      ++++     +     +                         +  + 
Sbjct: 248 KTVNNFPVTLEDIANVTIGPKAPKLGTASERGKSAVLMTVTKQPATSTLELTDKLEASLK 307

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         L 
Sbjct: 308 DLQKNLPPDVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTLI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN-MKL 750
           ++ TL L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +K 
Sbjct: 365 SLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRLKA 424

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +S  +++  +  E     + +++   +S +P+    G    ++    +     +  
Sbjct: 425 EAERLSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGVAFIVALFA 484

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N  +
Sbjct: 485 STIVALTLTPVLCSYLLGSNKTNKEL 510



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 99/268 (36%), Gaps = 11/268 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++  + N  VD +  R    S     +S    +      V+ +     +VA  
Sbjct: 766  VKDDARDEIEKIRNLMVDTNDGRKVPLSYVAEVVSAMGPNTINRENVKRKIVISANVADR 825

Query: 633  RVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +  +V      I     +        G +   E      + +      ++I++ +  ++
Sbjct: 826  DLRSVVNDIQKRIDTSVQLPEGYHIEYGGQFESEQAASRTLALTSFISIVVIFLLLYNEF 885

Query: 691  YFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +  L L +    G FAL     E ++ A+   ++L G +  + +++      N
Sbjct: 886  RSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHY--N 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAF 803
                   ++  D + +   + L   + T++++ ++++P+A+ G      +    A  +  
Sbjct: 944  HLQKEEGLNVYDSVIQGSLDRLNPILMTALSSALALIPLALAGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++ +   + FI   + L ++   A+ +
Sbjct: 1004 GLLTSTFLNGFIVPIVYLMMHRKEAQKS 1031


>gi|322437594|ref|YP_004219684.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
 gi|321165487|gb|ADW71190.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
          Length = 1034

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 82/577 (14%), Positives = 166/577 (28%), Gaps = 42/577 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +     +++   G+  A      Q  +  FP       + +G+D     + V+ V++
Sbjct: 18  KPIF--FFLAVLTLAGVYAAF-----QVPISVFPDTNFPRVV-IGVD-----NGVMPVEQ 64

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    ++  + +        +  +   +++L F  +             L  +
Sbjct: 65  MQVT---ITKPIEDAVNSVPGLQTVRSTTSRGSAEVSLFFDWNVDMFQTLQLTDAALSKI 121

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSME---IIRQRIDQIGISES 179
            S+L     K      T     IV      D      I ++        Q    +     
Sbjct: 122 QSELPATA-KITTNRLTFATFPIVAYALTADDRGPDTISRTALWQIATYQLKPPLNRVLG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
               +     + +     DP+RL+    T   +       N      ++           
Sbjct: 181 VSTVVVQGGQVPEFHIVPDPARLQAAGVTVLDIVNAVQASNIIDSPGLYEADHQL----- 235

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                         + G               I                 +G     V  
Sbjct: 236 --------------ILGLVGAQAHDAETLGHLIVKTSASGNPIRISDIATLGPATLPVYT 281

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                +        + +   +            A L     P                S 
Sbjct: 282 RVAADSHPAVLLNITRQPSSNTVAVATAVAAQVAALSKTLPPGVHLTPFYDQSELVHESI 341

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  +    I   L  ++LF+ +      LVA   I + V +T+  L ++G +  L ++ G
Sbjct: 342 ASVRDAILIGLVLACVILFLFLRDWSSSLVAGLVIPVTVAITILFLWIIGQSFNLMTLGG 401

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF- 478
           +   IGL +D  I+V E I       QS   ++ +        +  S IT ++  + L  
Sbjct: 402 LAAAIGLVIDDAIVVVENIVVHRDSGQSRTEAVRLALREITIPLIGSTITPVVVFLPLIG 461

Query: 479 --FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   R  A+TM +++L S+  A+S   A+ + ++R  +  +              
Sbjct: 462 VTGVTGSFFRALAVTMTVALLTSLMLALSFTPALSLSLLRQAEPGTGAKPHAEEHGPFMR 521

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
            +      A  W +  S    + +  LL +  L YG 
Sbjct: 522 RVLALHGTALNWTIQRSWALILIAAVLLVSGYLAYGH 558



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 96/265 (36%), Gaps = 10/265 (3%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           +  +  G + +   A+         + L    +   +    D     L+ +  QP  +  
Sbjct: 245 HDAETLGHLIVKTSASGNPIRISDIATLGPATLPVYTRVAADSHPAVLLNITRQPSSNTV 304

Query: 631 QTRVLEMVKKK-ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA--MLIYIWIR 687
                   +   +++ +P            ++  E I      ++I  +   +++++++R
Sbjct: 305 AVATAVAAQVAALSKTLPPGVHLTPFYDQSELVHESIASVRDAILIGLVLACVILFLFLR 364

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W  +L A   + + +  T+ F  + G  FNL  +  +   IG  ++D +VV + +   
Sbjct: 365 -DWSSSLVAGLVIPVTVAITILFLWIIGQSFNLMTLGGLAAAIGLVIDDAIVVVENI--- 420

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
           +    +  S  + +  ++ E     + +++   +  LP+    G       + A+ M   
Sbjct: 421 VVHRDSGQSRTEAVRLALREITIPLIGSTITPVVVFLPLIGVTGVTGSFFRALAVTMTVA 480

Query: 805 IVVAASSSIFIAAPILLFIYDWRAK 829
           ++ +   ++     + L +      
Sbjct: 481 LLTSLMLALSFTPALSLSLLRQAEP 505



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 60/519 (11%), Positives = 149/519 (28%), Gaps = 31/519 (5%)

Query: 6    WLVILYSMICCIGLLIALPNFLPQ-SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W +IL + +  +   +A  +            + +    +  G  L   + ++ +VD   
Sbjct: 539  WALILIAAVLLVSGYLAYGHLGSNLLPAMEEGAFVVDYIMPAGSSLAATTAVLDQVDH-- 596

Query: 65   FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFK--ENIADKVTLFLQGV 122
             ++    +     R+ L + G+   +     + I++       +  + I   +   ++  
Sbjct: 597  ILHADPDVLITTRRTGL-QLGLAAVTEANTGD-ISVRLKPGHTRGFDEITADLRAKIKEQ 654

Query: 123  NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              +L+V+  + L     +   S    Q  +    +  +      ++  I  I     T  
Sbjct: 655  APQLDVEFVQVLEDMIGDLSNSPEPIQIKLFSTDTALLHDLAPKVQAAIAAIPGVVDTQN 714

Query: 183  RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
             + +         + DPS   +L  T  +++       +        +       G  Y 
Sbjct: 715  GIDNTLSGPATNFQVDPSVAARLGFTPQEIAEDATSLLDGLPTNEPMIIA-----GRPYT 769

Query: 243  VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +                            +     G              P    +    
Sbjct: 770  I----------RVRMADEHRASLDAIQNTVFNSSTGHTATLGSMAQITELPPQNEIRREN 819

Query: 303  LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            L    +      G         ++ A     +     +       E++   +DL    + 
Sbjct: 820  LVQVDLVSGRLEGSDLGGAMVKVKAAVAALNLPATVRVEFGGTYQEQQKSFSDLARVLLL 879

Query: 363  KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                         VL               S  L++   L  L +      + S  G+++
Sbjct: 880  ALALVFG------VLLAEFRNLSAPFAILTSSVLSIAGVLLALLITHTDFNVASFMGLIM 933

Query: 423  GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL---FF 479
             IG+   + IL+ +       +  S   ++     R    I  + + A+   + L     
Sbjct: 934  VIGIVAKNGILLLDADERARAEGASARDAMVHAAQRRLRPIVMTAVAAMCGMLPLALALG 993

Query: 480  FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
             G   ++  AI +   +L+S+  ++ +  A+   + R+ 
Sbjct: 994  SGSQMLQPLAIAVIGGLLLSVLLSLIVTPALYYQLTRHH 1032



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 7/125 (5%)

Query: 681  LIYIWIRFKWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
               +   F+   A  AI T  +L I   L    +   +FN+ +   ++ +IG    + ++
Sbjct: 885  FGVLLAEFRNLSAPFAILTSSVLSIAGVLLALLITHTDFNVASFMGLIMVIGIVAKNGIL 944

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS 796
            + D    + +      S RD +  +    L   V T++AA   +LP+A+    G  ++  
Sbjct: 945  LLD---ADERARAEGASARDAMVHAAQRRLRPIVMTAVAAMCGMLPLALALGSGSQMLQP 1001

Query: 797  FAIPM 801
             AI +
Sbjct: 1002 LAIAV 1006


>gi|238764728|ref|ZP_04625671.1| Acriflavine resistance protein B [Yersinia kristensenii ATCC 33638]
 gi|238697019|gb|EEP89793.1| Acriflavine resistance protein B [Yersinia kristensenii ATCC 33638]
          Length = 279

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 64/235 (27%), Gaps = 24/235 (10%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 63  RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 104

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       +TL+F           +V  
Sbjct: 105 PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSSAGTATVTLTFLAGTNPNEAMQQVQN 164

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    KL  D ++  +  +   + ++++             + +  +     D +   
Sbjct: 165 QLQSATKKLPQDVQQQGVSVSKSGDSTLMMLAFVSTDDSMDKQDIADYVASNLQDPLSRI 224

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           E              +    DP++L     TT  +       N+       G R 
Sbjct: 225 EGVGSINAYGSQ-YAMRIWLDPNKLNNYQLTTQDIVTAIQSQNSQIAVGQLGGRP 278


>gi|170691756|ref|ZP_02882920.1| acriflavin resistance protein [Burkholderia graminis C4D1M]
 gi|170143040|gb|EDT11204.1| acriflavin resistance protein [Burkholderia graminis C4D1M]
          Length = 1064

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 64/523 (12%), Positives = 145/523 (27%), Gaps = 42/523 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           ++     ++L  ++  +G     P  + ++  D FP+                  +V   
Sbjct: 8   LQRPYTFIVLAVLLFILG-----PLAIIRTPTDIFPNIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMARRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + ++    + D +   +             Q+   
Sbjct: 112 NSASILRVLPPGTLPPNIITYNASTVPVLQLGLSSDTLPEQS--LYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  E DP  L+        +       N    G    +     + 
Sbjct: 170 QGAAVPLPFGGKIRQIMVELDPRALQAKGLAPIDVVNAVNAQNLILPGGTAKIGSREYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +   ++                     D+    +     +     ++    A  
Sbjct: 230 EMNGSTDTVAKL--------------------NDLPIKTVKGGVVYVRDVAHVIDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    I+    +   + AG       +           
Sbjct: 270 TNMVRSDGKRAALLQVEKTGSASTLTIIQQVKAMLPRIAAGLPKALNIVPLSDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S       I A L   ++ + +   +  L+   SI L V+ +L  L+ LG T+ + ++
Sbjct: 330 AISGVVREGLIAACLTAAMILLFLGSWRATLIIAVSIPLAVLTSLIALAALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     K   +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLEKGAPLHDAILNGSGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           F   G   R   + M  +++ +M  +    R ++  +  Y   
Sbjct: 450 FLLSGV-ARYLFVPMAEAVVFAMCASYFFSRTLIPTLAMYLMR 491



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 84/237 (35%), Gaps = 14/237 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR     +            +      LQ +   S +   +++ VK  +  I        
Sbjct: 256 VRDVAHVIDGYAPQTNMVRSDGKRAALLQVEKTGSASTLTIIQQVKAMLPRIAAGLPKAL 315

Query: 654 TEIVGPKIS-------RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
             +     S         ++R+G++   ++A  +L+++     W   L    ++ L +  
Sbjct: 316 NIVPLSDQSVFVKAAISGVVREGLIAACLTAAMILLFLG---SWRATLIIAVSIPLAVLT 372

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
           +L   A  G   N+  +  +   +G  V+D  V  + +              D I     
Sbjct: 373 SLIALAALGQTINIMTLGGLALAVGILVDDATVAIENI---THHLEKGAPLHDAILNGSG 429

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E    +  ++++  I  +PM +  G     F +PMA  +V A  +S F +  ++  +
Sbjct: 430 EIAVPTFVSTLSICIVFVPMFLLSGVARYLF-VPMAEAVVFAMCASYFFSRTLIPTL 485



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 7/163 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ +   + + + + F  W   L  I+ L   +              N+ A+   +  IG
Sbjct: 891  LVFAIALVYLLMVVNFQSWLDPLIIISGLPGSLAGIAWMLFATHTTLNVPALTGTILCIG 950

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R++++           +D   N      + T++A  I +LPMA+   
Sbjct: 951  IATANSILVINTARESLQNGM--EPLAAALDAGFNR-FRPVLMTALAMLIGMLPMALGLG 1007

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             GG         +  G+ +   S++     +   ++ W AK  
Sbjct: 1008 DGGEQNAPLGRAVIGGLAIGTLSTLMFVPVVFGMVHAWLAKRR 1050


>gi|298385093|ref|ZP_06994652.1| heavy metal efflux pump, CzcA family [Bacteroides sp. 1_1_14]
 gi|298262237|gb|EFI05102.1| heavy metal efflux pump, CzcA family [Bacteroides sp. 1_1_14]
          Length = 1042

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 77/679 (11%), Positives = 186/679 (27%), Gaps = 48/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   ++    ++   G   A+   +        P+ +     +       G       
Sbjct: 10  LHNRLVVLCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L V+  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 VVSESLPVNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +   + DP R+R    +  ++       N +  G +             
Sbjct: 174 AQVAVLGGDIKEYQIQLDPERMRHYGVSMGEVMAVTQDMNLNANGGVLYEFGNEYIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  E+    +               V                   IG     +   
Sbjct: 234 LSTPKVEELGKAVVKTVNNFPVTLEDIADVK------------------IGPKAPKLGTA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P +   +    A  +   T +    L  + +     +K++    R       S  
Sbjct: 276 SERGKPAVLMTVTKQPATSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+
Sbjct: 336 NVKKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+    +        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVYKRLRENRLKAEAERLSTLEVVFNASKEVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDIN 526
           + V LFF  G   R      I   +++  S   A+++   +  ++    +  K       
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGSNKTNKELKESFV 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +       R       +LF I                 +G   + + + 
Sbjct: 516 ARWMKGIYEKALTWVLAHKRVTLGSTIVLFLIALGVFFTLGRSFLPSFNEGSFTINISSL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   ++            R +            +E   +      
Sbjct: 576 PGISLEESNKMGHRAEELLLTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRPR 635

Query: 647 PLSTIQNTEIVGPKISREL 665
                +  E +G      +
Sbjct: 636 SELVAEVREKLGTITGANI 654



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 86/266 (32%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      D+ +     +     +                         +  + 
Sbjct: 248 KTVNNFPVTLEDIADVKIGPKAPKLGTASERGKPAVLMTVTKQPATSTLELTDKLEASLQ 307

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         L 
Sbjct: 308 DLQKNLPADVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTLI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN-MKL 750
           ++ TL L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +K 
Sbjct: 365 SLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRLKA 424

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +S  +++  +  E     + +++   +S +P+    G    ++    I     +  
Sbjct: 425 EAERLSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGIAFIVALFA 484

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N  +
Sbjct: 485 STVVALTLTPVLCSYLLGSNKTNKEL 510



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 101/264 (38%), Gaps = 11/264 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++  + N  VD +  R    +     +S    +      V+ +     +VA  
Sbjct: 766  VKDDARDEMEKIRNLMVDTNDGRKVPLNYVAEVVSSMGPNTINRENVKRKIVISANVADR 825

Query: 633  RVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +  +V     ++     +        G +   E     ++ +      ++I++ +  ++
Sbjct: 826  DLRSVVNDIQKQVDATIQLPEGYHIEYGGQFESEQAASRVLALTSFMSIVIIFLLLYHEF 885

Query: 691  YFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +  L L +    G FAL     E ++ A+   ++L G +  + +++      N
Sbjct: 886  RSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHY--N 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAF 803
                   ++  D + +   + L   + T++++ ++++P+A+     G+ I S  A  +  
Sbjct: 944  HLQQVEGLNVYDSVVQGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWR 827
            G++ +   + FI   + L ++  R
Sbjct: 1004 GLLTSTFLNGFIVPIVYLMMHRQR 1027


>gi|168334724|ref|ZP_02692856.1| preprotein translocase subunit SecD [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 408

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 32/173 (18%), Positives = 79/173 (45%), Gaps = 4/173 (2%)

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
             ++  VG K+  +     +   ++  I +LI++   ++    + A   L L ++  +  
Sbjct: 224 PVSSSGVGAKLGMDAFNSSLQAAVVGFIIVLIFMACVYRLS-GIVADIALTLYVSLVVII 282

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            +L      L  +A ++  IG +V+  V+++ R+++ +    +  + R  +D   N+ L 
Sbjct: 283 LSLIEATLTLPGIAGIILSIGMAVDANVIIFTRIKEEI---NSGKTVRSAVDSGFNKALS 339

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             V  ++   I+   + + G  +I SFA  +  GIV++  +++ +   +L   
Sbjct: 340 GIVDGNVTTLIAAFVLYMLGSGIIKSFATTLGIGIVLSMFTALVVTRILLRSF 392



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 20/131 (15%), Positives = 45/131 (34%), Gaps = 9/131 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+ +   ++       I + +A      +       +    N I+LGLDLRGG  +V EV
Sbjct: 1   MK-SILKIVGVVFAIIITVYLAYFGLGER-------NVFSYNHINLGLDLRGGVSIVYEV 52

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFL 119
           + +      +      ++  L +E      +    + +I ++       +   + +    
Sbjct: 53  EGETPQASDMAAAVAMIQVRLDRENYTEAEVAIEGDRRIRVNIPGVEDPQEAINSIGATA 112

Query: 120 QGVNSKLNVDP 130
                  N + 
Sbjct: 113 LLTFEDENGNV 123


>gi|189499260|ref|YP_001958730.1| acriflavin resistance protein [Chlorobium phaeobacteroides BS1]
 gi|189494701|gb|ACE03249.1| acriflavin resistance protein [Chlorobium phaeobacteroides BS1]
          Length = 1070

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 72/613 (11%), Positives = 179/613 (29%), Gaps = 36/613 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N+    +L      +G+L         +  +  P            DL    +       
Sbjct: 15  NSRLTPLLMITALLVGVLAT-----SMTPREEEPQISVPLV-----DL----YFSYPGGS 60

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + +        + ++    +T+ +      E+   K+   +   
Sbjct: 61  AKEVEERVAKPVEKYLTEIDGVDYVYSTSQKDFALVTVRYEVGDDTEDSMVKLWATIMKN 120

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++    +  L+   +  ++S++      +    +   Q  ++  Q  D++   ++   
Sbjct: 121 MDRMPAGMQFPLVKKVSIDDVSVLNLTFWSES---YGPYQLRKVASQVADELKKIKNIGD 177

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +  +  QL    D  +L +   T  ++S      N+      F       +      
Sbjct: 178 VNLNGGLKRQLRIVLDKEKLARYRITPLQISRQIRASNSRVTAGTFKQMNREFTVNTGEF 237

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   ++  + +    ++         V    +E+    FF                   
Sbjct: 238 LKTAEDVRNVVVGIYNSDPVYLNDVAEVIDGPEEVENYTFFGYGAAVGEASPGGEY---- 293

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      + +         E        L    +   + + E RN G         
Sbjct: 294 ----PAVTLTVAKRKGSDATVLAEKVLEKVEALNGSVITKGITVTETRNYGETASEKVFT 349

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                + A + + ++  + L  + GLV   S+ +   LTL +  L   TL   ++  ++ 
Sbjct: 350 LLEHLLGAVVAVTIVVSLFLGWRGGLVVFASVPITFALTLLVYYLFDYTLNRVTLFALIF 409

Query: 423 GIGLAVDSNILVNERIREENRKNQS--VFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
             G+ VD +I++ E I       +   +  ++         TI  +         ++F  
Sbjct: 410 VTGIVVDDSIIIAENIHRHFSMRRMPKMQAAIAAINEVGNPTILATFTVIASVLPMVFVS 469

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLI 534
           G  G  +    I   L+++ S+F A+ +   +   +      + +   I  +   + +  
Sbjct: 470 GLMGPYMSPMPIGASLAMIFSLFVALIVTPWLAFRLLKAEKTHAEEYDIRNSLYYKVYEK 529

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLL---FTHGLNYGIDFKGGIQLGVLANRPVDL 591
                +     R        L  + SI ++            D K   Q+ V       L
Sbjct: 530 TLVPLLDSWWKRAIAFAFVGLLLLGSIAMIPLKMVELKMLPFDNKSEFQVVVDMPEGTTL 589

Query: 592 SVVRSNLESLQIG 604
                  + +   
Sbjct: 590 EQTARATKDIVSY 602



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 3/160 (1%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++ + +A+ I + +   W   L    ++ +    TL  + LF    N   + A++ + G 
Sbjct: 354 LLGAVVAVTIVVSLFLGWRGGLVVFASVPITFALTLLVYYLFDYTLNRVTLFALIFVTGI 413

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +++ + +          +        +INE    ++  +     SVLPM V+   
Sbjct: 414 VVDDSIIIAENIH--RHFSMRRMPKMQAAIAAINEVGNPTILATFTVIASVLPM-VFVSG 470

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++G +  PM  G  +A   S+F+A  +  ++     K  +
Sbjct: 471 LMGPYMSPMPIGASLAMIFSLFVALIVTPWLAFRLLKAEK 510



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 86/290 (29%), Gaps = 12/290 (4%)

Query: 545  ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            AR     +S ++         T  L  G        + V           +     + + 
Sbjct: 790  ARASIRDLSDIYVKSQGMQSLTTRLPAGEMISLSELVTVREKIEDKSIYRKDLKNVVYVT 849

Query: 605  DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
                   +     ++ +  +  +                           +         
Sbjct: 850  ADVAGVAESPVYAMLDMDKRIKELEMPGGYGISPLYTAPPFNEDKLAMKWDGEWQITFEV 909

Query: 665  LIRKGIVGVIISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
                  +G   + + ++IY+ I      +   L  +  + L +   +    + G  F  T
Sbjct: 910  FRD---LGTAFAVVLVIIYLLIVGWFQSFRTPLVMMVAIPLSLVGIIPGHFVHGAFFTAT 966

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            ++  ++ L G  V + V++ D +          I  +  + +S        + T+    I
Sbjct: 967  SMIGMIALAGIMVRNSVLIIDFI---QLRVQEGIELKQAVVESAAVRTRPILLTAGTVVI 1023

Query: 782  SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              + +      +    AI + +G V++   ++ +  P+  ++ +   K+A
Sbjct: 1024 GAIVILF--DPIFQGLAISLMWGAVLSTILTLGVV-PLTYYLVEKGKKSA 1070


>gi|222056842|ref|YP_002539204.1| heavy metal efflux pump, CzcA family [Geobacter sp. FRC-32]
 gi|221566131|gb|ACM22103.1| heavy metal efflux pump, CzcA family [Geobacter sp. FRC-32]
          Length = 1026

 Score =  124 bits (311), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 77/608 (12%), Positives = 178/608 (29%), Gaps = 36/608 (5%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    +   +                + + + F            V   LQ + 
Sbjct: 59  EEVESVVTYPIESAVNGSSGVRRVRSYTVAGLSTVWVEFTWGTDIYKARQVVNEKLQSLA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L  D    L   ++     + ++  +         E +  +IR+R   +       Q 
Sbjct: 119 GVLPADAIPQLAPISSIMGEIMHVALVSDKHNTMELKETADFVIRKR---LLAVPGVSQV 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   Q     DP RL+    T  ++       N +    +               V
Sbjct: 176 SNIGGDTRQYQAVLDPQRLQAFGVTVGQVITALKGANENFAAGVMKKTGQEYMIRGVGRV 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               ++                      +     G              P     D    
Sbjct: 236 RTTADLE-------------------QVVVTARGGVPVLVRDVARVAIGPAFRYGDASAN 276

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
             P +  +I       +   T    G LA + ++    +KL     R       +    K
Sbjct: 277 GKPGVVISIQKHPTANTLELTKRLEGKLAELQKSLPAGMKLETDIFRQSDFIERAIDNIK 336

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                 A LV+++LF+ +   +  L++  ++ L+++  +  L +   ++   ++ G+ + 
Sbjct: 337 KVLTEGALLVIVILFLFLGNVRTTLISITAMPLSLLFAIFALRIFDISINTMTLGGMAIA 396

Query: 424 IGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIATV 475
           IG+ VD  I+  E +    ++N+             +        ++I ++ +  L+  +
Sbjct: 397 IGVIVDDAIIDVENVFRRLQENRLKPESTRSPSRMVIFEASKEIRASIVNATMIILMVFM 456

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK---MKSIDINPLS 529
            LFF     G  +R   I+  +SI  S+  A+++  A+  +++   K    +        
Sbjct: 457 PLFFLTGVEGRLLRPLGISYMVSIGASLIVALTVTPALCSYLLPRAKCLEREEESAAVRW 516

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
              L    + +   R +    G    F +  I L  T         +G + + ++ +   
Sbjct: 517 LQRLYRPMLNLAISRPKLVIAGSVAAFVLAMIPLSMTGRSFLPAFNEGALTVVIVTSAGT 576

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L    +    ++   ++  N         R         A    +E         +   
Sbjct: 577 SLEQSAAIALEVEKKLLAHPNIKKTARRTGRGDMDEHGKAASMTEIEAKLDMKDRKLGDV 636

Query: 650 TIQNTEIV 657
             +  + +
Sbjct: 637 MAEVRKSM 644



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 83/248 (33%), Gaps = 13/248 (5%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           VR            + +        V +  Q   +     + + ++ K+ E+        
Sbjct: 256 VRDVARVAIGPAFRYGDASANGKPGVVISIQKHPTANTLELTKRLEGKLAELQKSLPAGM 315

Query: 654 TEIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                     + I + I  +       + + ++I           L +IT + L +   +
Sbjct: 316 KLETDIFRQSDFIERAIDNIKKVLTEGALLVIVILFLFLGNVRTTLISITAMPLSLLFAI 375

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN-MKLYTTSISFRDLIDK 763
               +F I  N   +  +   IG  V+D ++    V+ R+++N +K  +T    R +I +
Sbjct: 376 FALRIFDISINTMTLGGMAIAIGVIVDDAIIDVENVFRRLQENRLKPESTRSPSRMVIFE 435

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           +  E     V  +M   +  +P+    G    ++    I     I  +   ++ +   + 
Sbjct: 436 ASKEIRASIVNATMIILMVFMPLFFLTGVEGRLLRPLGISYMVSIGASLIVALTVTPALC 495

Query: 821 LFIYDWRA 828
            ++     
Sbjct: 496 SYLLPRAK 503



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/139 (13%), Positives = 58/139 (41%), Gaps = 8/139 (5%)

Query: 697  ITTLILDITKTLGFFA--LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            +  + L +    G  A        ++ ++   +TL G +  + +++    +    +    
Sbjct: 890  LVMVNLPLAFIGGIIAVYFTSRVISVASLVGFITLFGIATRNGILLISHYK--HLMEQDG 947

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAAS 810
             + ++ + +   E L   + T++AA ++++P A+     G  ++   AI +  G++ +  
Sbjct: 948  KTLQEAVLQGSMERLRPVIMTALAAGLALVPFAIAADKPGNEILSPLAIVILGGLLSSTV 1007

Query: 811  SSIFIAAPILLFIYDWRAK 829
             ++ +   + L     + K
Sbjct: 1008 LNMVVLPSLYLKFGKEQQK 1026


>gi|282880948|ref|ZP_06289639.1| heavy metal efflux pump, CzcA family [Prevotella timonensis CRIS
           5C-B1]
 gi|281305171|gb|EFA97240.1| heavy metal efflux pump, CzcA family [Prevotella timonensis CRIS
           5C-B1]
          Length = 1035

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 71/674 (10%), Positives = 173/674 (25%), Gaps = 51/674 (7%)

Query: 12  SMICCIGLLIALPNFLP--QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
            +I    +++ L       ++ +D FP       +              E    + V   
Sbjct: 14  LLILVGAVVLVLMGLYSVHRTEVDVFPDLNAPTVV---------VMTEAEGMAAEEVEQL 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +   +          S     + + + F            V+  L  V+  L   
Sbjct: 65  VTFPIETSVNGATGVRRVRSSSTTGFSVVWVEFDWGTDIYRARQIVSEKLLTVSESLPST 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            ++  L   +     +++     D      ++           ++       Q       
Sbjct: 125 VRRPTLGPQSSILGEVMIVSLTSDSTSM--LDLRTLADWTIRPRLLSIGGVAQVAVIGGD 182

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             +   + +P ++       A +                       + G        V  
Sbjct: 183 QKEYQIQVNPRKMNHYGVNLADVMAA--------------------TRGMNKNTNGGVLY 222

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
              +             + +      + G           I         G         
Sbjct: 223 EFGNEYVIRGMMPTPALERIGKTVVKKTGDYPVTLSDVAEIKIGSESPKLGVASEKGKPA 282

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLN--IVEERNVGADLGSDSIYKGTCA 367
             +   K   +G   +      A       LP  ++      R       S    K +  
Sbjct: 283 VLLTVTKQPNTGTIELTEVLDKAIEDLQKDLPANVHVSTDVFRQSSFIQSSIDNVKDSLL 342

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             A  V+IVLF+ +   +  +++  +I L+++++L +L  LG ++   S+ G+ + IG  
Sbjct: 343 EGALFVVIVLFLFLANVRTTIISLVTIPLSLLVSLLVLHQLGESVNTMSLGGMAIAIGSL 402

Query: 428 VDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALIATVVLFF 479
           VD  I+  E +  + R+N  +  +        +          I +S +  + + V LFF
Sbjct: 403 VDDAIVDVENVWRKLRENHLLPKAERLGILNVVYHASREVRLPILNSTLIIVASFVPLFF 462

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRF 531
                G  +    I   +++  S   A+++   +  ++      +               
Sbjct: 463 LSGMEGRMLIPLGIAFIVALFASTVVALTLTPVLCSYLLNVHMNQNNVKWKEPKVVDWLK 522

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 ++      R   +    +                    +G   + V +   + L
Sbjct: 523 RHYATALSWVLYHKRVVLLSACGVLLATLCIFFSLGHSFLPPFNEGSFTINVSSMPGISL 582

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                  +  +   +S            R +            +E   +           
Sbjct: 583 EESNKIGQQAEKILLSIPEIKTVARKTGRAELDEHALGVNMSEIEAPFELTNRSHQALLN 642

Query: 652 QNTEIVGPKISREL 665
              E +   +   +
Sbjct: 643 DVREKLSTIVGANI 656



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 92/256 (35%), Gaps = 16/256 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       + LS +   + S     I  +N   +         +   SV      E+  
Sbjct: 783  MVDTSNGTKIPLSNIADIVSSTGPNTIHRENVARKIVISANANGRDLGSVVNDIQKEIKA 842

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAIT 698
            K                     S+ L+   ++ +++      I++ +  ++  A+   + 
Sbjct: 843  KVNLPEGYHIEYGGQFESEKSASKTLLITSLLSIVV------IFLLLYMQFKNAVESGVI 896

Query: 699  TLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             L L      G   L     E ++ A+   ++L G +  + +++  R   N       ++
Sbjct: 897  LLNLPFALIGGVLVLWMTSGEVSIPAIIGFISLFGIATRNGMLLITRY--NSLREDEGLT 954

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAASSS 812
             R+ + K  ++ L   + T++ + ++++P+       G+ I S  A  +  G++ +   +
Sbjct: 955  VRESVLKGSSDRLNPILMTALTSALALVPLVFRGDLPGNEIQSPMATVILGGLLSSTFLN 1014

Query: 813  IFIAAPILLFIYDWRA 828
             FI  PI+      + 
Sbjct: 1015 AFII-PIVYEWICRKE 1029



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/208 (12%), Positives = 71/208 (34%), Gaps = 7/208 (3%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-IS 676
            V  Q   G       + + ++    ++     +           +  I      ++  +
Sbjct: 286 TVTKQPNTGTIELTEVLDKAIEDLQKDLPANVHVSTDVFRQSSFIQSSIDNVKDSLLEGA 345

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
              +++           + ++ T+ L +  +L      G   N  ++  +   IG  V+D
Sbjct: 346 LFVVIVLFLFLANVRTTIISLVTIPLSLLVSLLVLHQLGESVNTMSLGGMAIAIGSLVDD 405

Query: 737 KVVVYDRM----RKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +V  + +    R+N +      +   +++  +  E     + +++    S +P+    G
Sbjct: 406 AIVDVENVWRKLRENHLLPKAERLGILNVVYHASREVRLPILNSTLIIVASFVPLFFLSG 465

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPI 819
                  IP+    +VA  +S  +A  +
Sbjct: 466 MEGRML-IPLGIAFIVALFASTVVALTL 492


>gi|206968699|ref|ZP_03229654.1| membrane protein YdfJ [Bacillus cereus AH1134]
 gi|206735740|gb|EDZ52898.1| membrane protein YdfJ [Bacillus cereus AH1134]
          Length = 706

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 69/558 (12%), Positives = 183/558 (32%), Gaps = 64/558 (11%)

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             +   +           +        + S+   +    ++A ++L + F   L     +
Sbjct: 117 KNVLNKIEQTREEGIQTELTGDVKFTVVESNGESEAIGIVIAFIILAITFTSFLAAGMPI 176

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           +         +L + + S       L     I+LGI + +D  + +  R R++  +  SV
Sbjct: 177 ITAIIGLGTGMLVVMIGSNFIELQDLSLSVAIMLGIAVGIDYALFIMTRFRQQLGEGHSV 236

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             S+ +    A S +  + IT +I  + L       +        +SIL ++  +I ++ 
Sbjct: 237 KESIAIATGTAGSAVVFAGITVIIGLLGLSVMKIPFLTKMGAVSSISILSAVLVSIIVLP 296

Query: 509 AMMIFIIRYKKM---KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
           A++  +                               +  +   V   +  ++ ++  L 
Sbjct: 297 ALLGIVGHRFHPSTGNKFLKKITGAKEGKVPSNKWGKLVTKHPLVMSFLAIALLAVISLP 356

Query: 566 THGLNYGIDFKGGIQ-------------------------------------LGVLANRP 588
              +N G+   G                                                
Sbjct: 357 FFHMNLGLPDDGDTMSKDTTERKAYDLMTEAYGEGVHSSLVVAAKIDSKKQDPQKTQKAM 416

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +++     L++++    +F N  G+   +        + +    +++ +++K       
Sbjct: 417 AEITEEIGELKNVKSVTPAFPNSSGDVFIITVTPKTGPNDIETKNLVKHIREKSNITKKE 476

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAML-----IYIWIRFKWYFALGAITTLILD 703
           + I+        ++ ++  K    + I A+ ++     + + +       L A+   +L 
Sbjct: 477 NDIELLVTGTTAVNIDITEKLNTALPIFAVLVVGLAYVLLVLVFRSLLLPLKAVVGFLLS 536

Query: 704 ITKTLGF----------FALFGIEFNLTAVA--AVLTL---IGYSVNDKVVVYDRMRKNM 748
           +  TLGF            LFG   +   +A   +LT+    G +++ +V +  RMR+  
Sbjct: 537 LAATLGFAVFVIQDGNLLDLFGFPSSSAILAFLPILTIGILFGLAMDYEVFLASRMRE-- 594

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            +YT + + ++ I   + ++        +          +    ++ +  + +AFG++  
Sbjct: 595 -VYTHTGNPKEAILAGMRDSGKVVAAAGLIMIAVFFGFMLMPDPMVKAIGMSLAFGVLFD 653

Query: 809 AS-SSIFIAAPILLFIYD 825
           A    + I   ++  +  
Sbjct: 654 AFVVRLTIVPAVMTLMGK 671


>gi|297194808|ref|ZP_06912206.1| integral membrane efflux protein [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197720730|gb|EDY64638.1| integral membrane efflux protein [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 1041

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 69/516 (13%), Positives = 152/516 (29%), Gaps = 34/516 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  ++  + ++      +PQ      PS        L            +  
Sbjct: 6   RFSLSQRALIGLMSIVAIVFGA-IAVPQLKQQLLPSIELPMVSVLAP---------YQGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D V   +    +     +        +  +    I  SF      + +   V   +  
Sbjct: 56  SPDVVEKQVVEPLEASLKAVDGIEGITSTAAEGSAVIMASFEYGDGSKQLVADVQQAVNR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  +    ++  +T+   ++VL+  +           + ++ R  +  I   E   
Sbjct: 116 ARAQLPDEVDPQVVAGSTDDIPTVVLAVTSDKDQQ----ALADQLERTVVPAIEDIEGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q        +Q+    D  +L      T  +S        +     F      D      
Sbjct: 172 QVSIDGVQDLQVSVTPDERKLAAAGLNTMALSEALRSGGATMPAGSF----SEDGKSRTV 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V                    +  + +  +                 + +  A  +   
Sbjct: 228 QVGGG-------------FTSLRQIEDLRIVPAPGTKGEPVRLGDIATVEQTEASRVSLT 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + +     S     E        LRA         V      A   S S 
Sbjct: 275 RTNGRPSLAVMATMDNDGSAVDISEAVQDKLPGLRADLGAGAELTVVSDQGPAVSKSISG 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A+     +IV+ + +   +  LV   SI L+V+L L +L     +L + ++  + 
Sbjct: 335 LTTEGALGLVFAVIVILVFLTSLRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALT 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD +I+V E I+      +    ++          +  S +T +   + +   G
Sbjct: 395 IAIGRVVDDSIVVLENIKRHLGYGEERQSAIITAVKEVAGAVTSSTLTTVAVFLPIGLVG 454

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G        F++T+  ++L S+  ++++V  +  + 
Sbjct: 455 GMVGELFGSFSLTVTAALLASLLVSLTVVPVLSYWF 490



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 66/195 (33%), Gaps = 8/195 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                              V   ++ KI  +        +     +   E      + ++
Sbjct: 798 DGSRAATITAKPTGDNTGAVSTELQSKINALDLPEGATASIGGVSEDQEEAFLNLGLAML 857

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +   F+     L  + ++    T  +G     G    + A+  +L LIG  
Sbjct: 858 AAIAIVFMLLVATFRSLIQPLILLVSIPFAATGAIGLLVATGTPMGVPAMIGMLMLIGIV 917

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
           V + +V+ D + +        +   + + +     L   + T++A   ++LPMA+     
Sbjct: 918 VTNAIVLIDLINQYRAQ---GLGVVEAVVEGGRHRLRPILMTALATIFALLPMALGVTGE 974

Query: 790 GGSVIGSFAIPMAFG 804
           GG +    A+ +  G
Sbjct: 975 GGFIAKPLAVVVIGG 989



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 69/186 (37%), Gaps = 19/186 (10%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE---LIRKGIVGVIISAIAMLIYIW 685
                V + +     ++   + +      GP +S+    L  +G +G++ + I +L+++ 
Sbjct: 296 DISEAVQDKLPGLRADLGAGAELTVVSDQGPAVSKSISGLTTEGALGLVFAVIVILVFLT 355

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   L    ++ L +   L       +  N+  + A+   IG  V+D +VV + ++
Sbjct: 356 ---SLRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK 412

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
              +        +  I  ++ E  G    +++      LP+ + GG            G 
Sbjct: 413 ---RHLGYGEERQSAIITAVKEVAGAVTSSTLTTVAVFLPIGLVGG----------MVGE 459

Query: 806 VVAASS 811
           +  + S
Sbjct: 460 LFGSFS 465


>gi|56707279|ref|YP_169175.1| AcrB/AcrD/AcrF family transporter [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669749|ref|YP_666306.1| AcrB/AcrD/AcrF family transporter [Francisella tularensis subsp.
           tularensis FSC198]
 gi|224456343|ref|ZP_03664816.1| AcrB/AcrD/AcrF family transporter [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254874117|ref|ZP_05246827.1| transporter [Francisella tularensis subsp. tularensis MA00-2987]
 gi|56603771|emb|CAG44738.1| Transporter AcrB/AcrD/AcrF family [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320082|emb|CAL08121.1| Transporter AcrB/AcrD/AcrF family [Francisella tularensis subsp.
           tularensis FSC198]
 gi|254840116|gb|EET18552.1| transporter [Francisella tularensis subsp. tularensis MA00-2987]
 gi|282158397|gb|ADA77788.1| Transporter AcrB/AcrD/AcrF family protein [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 1037

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 150/524 (28%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G+         +  + ++P                         
Sbjct: 9   RRPVLSLSISFMIIVVGVGS-----FFKLQVRQYPYIDSATIT---------VTTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +  F+    +      K             + IT+         ++  +V   +  
Sbjct: 55  NPATIQAFVTRPLEAAVGSSKGIDYMTSESALGTSTITVYVKLGYNTNDVLSEVVQNVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  D     +          ++          +  E S  I  +   ++       
Sbjct: 115 ILNQLPQDAYSPAIKLNPADNFPSLILAFTSK--TMNTSEISAYINSELTPKLLAEGGLS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    + +R+ +   T  +++      +    G      +L  +     
Sbjct: 173 EINVWGNMPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYT----- 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  T +   ++   +   +         +           
Sbjct: 228 ---------------LNPETSMSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A      + +    +         ++A         V   +      S   
Sbjct: 273 YFDGKNAVLAGAVVSPEENPLDVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V IV+F+ +   +  +V   +I L++I +  L+S++G ++ L ++  ++
Sbjct: 333 VLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +    F +   G     + +    +T ++    +   G
Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G     FA ++  ++LIS   A ++   M   ++  + M S
Sbjct: 453 GFTGQLFTEFAYSLAGAVLISGIVAYTLSPMMCSKVLNREMMSS 496



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 104/331 (31%), Gaps = 14/331 (4%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           +           I  N             +         V          +        +
Sbjct: 174 INVWGNMPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYTLNPETS 233

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                +    +   ++  +      + +E       S   FDG+   L      P ++  
Sbjct: 234 MSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSVYFDGKNAVLAGAVVSPEENPL 293

Query: 631 QT-----RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                  + L  +K  +   + +    N+ +       E++   +  VII +I M +++ 
Sbjct: 294 DVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDEVLHTLLEAVIIVSIVMFLFLG 353

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +  I  + L I  +    ++ G   NL  + A++  IG  V+D +VV + + 
Sbjct: 354 ---SLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMILAIGLVVDDAIVVLENI- 409

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +       K   E     +  ++   +   P+ + G   G +   FA  +A
Sbjct: 410 --YRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMGGFTGQLFTEFAYSLA 467

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++++   +  ++  +   + +    ++++
Sbjct: 468 GAVLISGIVAYTLSPMMCSKVLNREMMSSKL 498



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 92/295 (31%), Gaps = 14/295 (4%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                      S  ++     N  +  +    + + ++    L      L +L       Q
Sbjct: 732  YINYFFLKGYSFQVIPQLARNEMLTQEQLGNIYIRSDEMNKLFDSEVPLSALVTFKTEGQ 791

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                     +                + ++   + +  +     +        + +    
Sbjct: 792  PLTLNTFQQLNASTISAVMAPGITQGQAIEYVQSVVKSMLPEGFSYNFSGSARQYIENGN 851

Query: 670  IVGVIISAIAMLIYIWIR-----FKWYFALGAITTLILD-ITKTLGFFALFGIE---FNL 720
             + V  +   +LI++ +      F+    +     + +      L      G      N+
Sbjct: 852  TMMVAFAFAIVLIFLALSAQFESFRDSLVILVTIPMAISGALIPLYVGQYLGASWASLNI 911

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 ++TLIG      ++V +    N       ++  D I  S ++ L   + T  A  
Sbjct: 912  YTQLGLVTLIGLISKQGIMVVE--FANHLQKHNGMNKYDAIVTSSSQRLRPILMTVSAMV 969

Query: 781  ISVLPMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + V+P+    G   I      + ++ G+V+ A  S+F+   + ++I   ++K  +
Sbjct: 970  VGVIPLVTSSGAGAISRNCIGVVISSGLVIGAIFSLFVLPVVYMYIASDKSKLVK 1024


>gi|160882717|ref|ZP_02063720.1| hypothetical protein BACOVA_00675 [Bacteroides ovatus ATCC 8483]
 gi|156111887|gb|EDO13632.1| hypothetical protein BACOVA_00675 [Bacteroides ovatus ATCC 8483]
          Length = 1032

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/679 (10%), Positives = 183/679 (26%), Gaps = 48/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   +V    ++   G   A+   +        P+ +     +       G       
Sbjct: 10  LHNRLVVVCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L V+  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 VVSESLPVNVGKPTLGPQSSILGEMLIIGLTADSTSM--LDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +   + DP R+R    +  ++       N +  G +             
Sbjct: 174 AQVAVLGGDIKEYQIQLDPERMRHYGISMGEVMAVTQDMNLNANGGVLYEFGNEYIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++    +               V                   IG     +   
Sbjct: 234 LSTSKTEQLGKAVVKTVNNFPVTLEDIANVT------------------IGPKAPKLGTA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +   +    A  +   T +    L  + +     +K++    R       S  
Sbjct: 276 SERGKSAVLMTVTKQPATSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+
Sbjct: 336 NVKKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+    +        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVYKRLRENRLKVEAERLSTLEVVFNASKEVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + V LFF  G   R      +   +++  S   A+++   +  +++   K          
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGVAFIVALFASTIVALTLTPVLCSYLLGSNKTNKELKEAPV 515

Query: 530 RFFLIPDCIA---IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             ++               R        LF +                 +G   + + + 
Sbjct: 516 ARWMKGIYEKALTWVLAHKRVTLGSTIGLFVVALGVFFTLGRSFLPSFNEGSFTINISSL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   ++            R +            +E   +      
Sbjct: 576 PGISLEESNKMGHRAEELLMTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSR 635

Query: 647 PLSTIQNTEIVGPKISREL 665
                   E +G      +
Sbjct: 636 SELVADVREKLGTITGANI 654



 Score = 77.4 bits (188), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 88/266 (33%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      ++++     +     +                         +  + 
Sbjct: 248 KTVNNFPVTLEDIANVTIGPKAPKLGTASERGKSAVLMTVTKQPATSTLELTDKLEASLK 307

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         L 
Sbjct: 308 DLQKNLPPDVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTLI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN-MKL 750
           ++ TL L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +K+
Sbjct: 365 SLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRLKV 424

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +S  +++  +  E     + +++   +S +P+    G    ++    +     +  
Sbjct: 425 EAERLSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGVAFIVALFA 484

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N  +
Sbjct: 485 STIVALTLTPVLCSYLLGSNKTNKEL 510



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 100/268 (37%), Gaps = 11/268 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++  + N  VD +  R    S     +S    +      V+ +     +VA  
Sbjct: 766  VKDDARDEIEKIRNLMVDTNDGRKVPLSYVAEVVSAMGPNTINRENVKRKIVISANVADR 825

Query: 633  RVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +  +V      I     +        G +   E      + +      ++I++ +  ++
Sbjct: 826  DLRSVVNDIQKRIDTSVQLPEGYHIEYGGQFESEQAASRTLALTSFISIVVIFLLLYNEF 885

Query: 691  YFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +  L L +    G FAL     E ++ A+   ++L G +  + +++      N
Sbjct: 886  RSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHY--N 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAF 803
                   ++  D + +   + L   + T++++ ++++P+A+ G      +    A  +  
Sbjct: 944  HLQKEEGLNVYDSVIQGSLDRLNPILMTALSSALALIPLALAGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++ +   + FI   + L ++  +A+ +
Sbjct: 1004 GLLTSTFLNGFIVPIVYLMMHRKKAQKS 1031


>gi|242278570|ref|YP_002990699.1| acriflavin resistance protein [Desulfovibrio salexigens DSM 2638]
 gi|242121464|gb|ACS79160.1| acriflavin resistance protein [Desulfovibrio salexigens DSM 2638]
          Length = 1038

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/504 (13%), Positives = 139/504 (27%), Gaps = 39/504 (7%)

Query: 17  IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE 76
            G L         S     P                             +   +    ++
Sbjct: 24  FGGLALSGLPYQLSPSVTEPEIT--------------VETSWTGATPYEIERDIIEEQEK 69

Query: 77  LRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLV 136
           +   +               +I+L F      ++   +V+  L  V    +   +  +  
Sbjct: 70  VLKGVTGLMEMESECFDSFGRISLRFKIGTNIDDALLRVSNKLNEVKKYPSDSDRPVISA 129

Query: 137 TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196
           T       I +    +     H  E +          +   +             ++   
Sbjct: 130 TGASASPVIWMILRTLPDNKHHINEYATYFEDDVRQYLERVDGVADLFVGGGTENEMHII 189

Query: 197 QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
             P +L     T  K++      N +      GV             +   EI  + +  
Sbjct: 190 IAPEKLAAYNLTIDKVTKVLQSENANVSAGNLGVGRRDYRIRTTSEFKTPEEIESVVIT- 248

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316
                                G +R        +           +             +
Sbjct: 249 -------------------SSGQQRVTIGDVGKVVPGFEKQTVSMLHNGIPGMAIGVKPE 289

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIK--LNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
              +     +    +   L A  L  K               G+  + K    I   L +
Sbjct: 290 PGSNVLEVTKNVRKVVEDLNAEVLADKGIFLDWVYDQAPYINGAIDLVKQNIIIGGVLAV 349

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           IVL + +      ++   +I ++V+ +  +   LG TL + S++GI   +G+ VD+ I+V
Sbjct: 350 IVLLIFLQSFSATIIVAIAIPISVVGSFIVFGGLGRTLNIVSMSGISFAVGMLVDNAIVV 409

Query: 435 NERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF---GGGAVRGFAIT 491
            E I       +  + +   G S  +  +  S +T +   + + F     G   +  AI 
Sbjct: 410 LENIDRHRGMGKRPYNAAYDGASEVWGAVLASTLTTVAVFLPVVFIEEEAGQLFKDIAIA 469

Query: 492 MGLSILISMFTAISIVRAMMIFII 515
           +  +I +SMF +IS++  +     
Sbjct: 470 VTCAISLSMFVSISVIPMLAKQFY 493



 Score = 72.0 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/206 (11%), Positives = 72/206 (34%), Gaps = 8/206 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                    +  V ++  + + +          +      + +L+++ I  +I   +A++
Sbjct: 293 NVLEVTKNVRKVVEDLNAEVLADKGIFLDWVYDQAPYINGAIDLVKQNI--IIGGVLAVI 350

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +     +   +     + + +  +   F   G   N+ +++ +   +G  V++ +VV 
Sbjct: 351 VLLIFLQSFSATIIVAIAIPISVVGSFIVFGGLGRTLNIVSMSGISFAVGMLVDNAIVVL 410

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFA 798
           + +    +         +      +E  G  + +++      LP+       G +    A
Sbjct: 411 ENI---DRHRGMGKRPYNAAYDGASEVWGAVLASTLTTVAVFLPVVFIEEEAGQLFKDIA 467

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIY 824
           I +   I ++   SI +   +    Y
Sbjct: 468 IAVTCAISLSMFVSISVIPMLAKQFY 493



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 82/254 (32%), Gaps = 21/254 (8%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            V +S +     +  I  I            +          A   V   +  K+ E+  +
Sbjct: 784  VPVSSLSHLERTYGITQIRHLERQRTVTLQITPPKSMPLEQAMDIVQNQLIPKVKEMGLM 843

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKT 707
              +            +         +++ +   + +   F  + +    + T+ L     
Sbjct: 844  DGVNVRMSGAADKLTQTREAMQWNFLLAVVITYLLMAALFGNFIYPFIILLTVPL----- 898

Query: 708  LGFFALFGIEFNLTAVA----------AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             G     G++     +A            + LIG  VN+ +++  +   N++     +  
Sbjct: 899  AGAGGFLGLKLENLFIAPQPLDVLTMLGFVILIGVVVNNAILIVHQSLNNVR--NEGMEH 956

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
            R+ + ++    L     ++  +   +LP+A+    G  +       +  G+ ++   ++F
Sbjct: 957  REAVLEATRSRLRPIYMSATTSIFGMLPLAIAPGPGSELYRGLGAVVLGGLALSTVFTVF 1016

Query: 815  IAAPILLFIYDWRA 828
            +   +L+F      
Sbjct: 1017 MIPALLMFFIKMEK 1030


>gi|312112883|ref|YP_004010479.1| acriflavin resistance protein [Rhodomicrobium vannielii ATCC 17100]
 gi|311218012|gb|ADP69380.1| acriflavin resistance protein [Rhodomicrobium vannielii ATCC 17100]
          Length = 1055

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 58/519 (11%), Positives = 134/519 (25%), Gaps = 46/519 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 ++ + I   G+            +   P                   + +    
Sbjct: 10  RPVATTLMMAAIVLSGVAA-----FFYLPVAPLPQVDFPT-------------IQVSAQL 51

Query: 63  DDFVNGFL-QMYSDELRS---FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +    +  L      +        +      +I + F   R  +  A  V   
Sbjct: 52  PGASAQTMASSVATPLEQQFGQIAGVTQLTSTSTLGNTQINIQFELDRSIDAAAQDVQAA 111

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +     KL                   ++   ++        E S +       QI    
Sbjct: 112 ITAAGRKLPTSLSSPPSYRKFNPADPPIII-LSVTADTLPITEVSDQAENILAQQISQIR 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                    +    +  + DP RL     T   +                       +  
Sbjct: 171 GVANVNIGGQQKPSVRVQVDPERLASRGLTLEDVRAMLGTITADAAKGTVQGVEQSFTIA 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
               +    +                       +                         L
Sbjct: 231 ANDQIVKPED--------------------YDKVILAYRNGAPIRVADVGRAVAGPENTL 270

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
            G           +   +   +   T++          +         +          S
Sbjct: 271 SGAWANGKRSVLLVIFKQPGANVIETVDAIKAALPKFASVIPAGVKIDIMNDRTETIRAS 330

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               + T  +  GLV++V+ + +   +  L+A   + +++I T A++ + G +L   S+ 
Sbjct: 331 VHEVEFTLLLTIGLVVLVVLLFLRNLRATLIASAIVPISLIGTFAVMYVAGFSLDNLSLM 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +V+ +G  VD  I+V E I       +  F +   G S    T+   +++ +   + L 
Sbjct: 391 ALVIAVGFVVDDAIVVVENIVRHIENGEPPFRAALKGASEIGFTVMSISLSLVAVFIPLL 450

Query: 479 FFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
             GG     +  FA+T+ ++I +S+  A+++   +    
Sbjct: 451 LMGGIIGRLMHEFAMTVTVTIAVSVVVALTLTPMLCSRF 489



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/132 (15%), Positives = 53/132 (40%), Gaps = 6/132 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L A   + + +  T     + G   +  ++ A++  +G+ V+D +VV + +   ++ 
Sbjct: 357 RATLIASAIVPISLIGTFAVMYVAGFSLDNLSLMALVIAVGFVVDDAIVVVENI---VRH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
                       K  +E     +  S++     +P+ + GG +   +  FA+ +   I V
Sbjct: 414 IENGEPPFRAALKGASEIGFTVMSISLSLVAVFIPLLLMGGIIGRLMHEFAMTVTVTIAV 473

Query: 808 AASSSIFIAAPI 819
           +   ++ +   +
Sbjct: 474 SVVVALTLTPML 485



 Score = 46.2 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 80/204 (39%), Gaps = 6/204 (2%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
              +  +   + EI    T+  +     +  ++ +R   + ++ + + + I + + ++ + 
Sbjct: 822  EGVTAINAAMAEIGAPKTLVGSFQGNAQAFQDSLRTTPILIVAALVTVYIILGMLYESFI 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  ++TL       L     FG + ++  +  ++ LIG    + +++ D         
Sbjct: 882  HPLTILSTLPSAGVGALLMLMAFGFDLSVIGIIGIILLIGIVKKNGIMMVD--FAITAER 939

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +S  + I ++        + T+ AA +  +P+ +    G  +       M  G+ ++
Sbjct: 940  QRGLSAEESIREAALLRFRPILMTTAAALLGGVPLMLGTGSGSELRQPLGYAMVGGLALS 999

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               +++    I L++   + +  R
Sbjct: 1000 QILTLYTTPVIYLYLDKLQTRVTR 1023


>gi|167579534|ref|ZP_02372408.1| acriflavin resistance protein [Burkholderia thailandensis TXDOH]
          Length = 1081

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 67/525 (12%), Positives = 149/525 (28%), Gaps = 36/525 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I   G L AL     ++  D FP       IS+     G       +  
Sbjct: 11  RPYTFIVLAMLILIAGPLSAL-----RTPTDIFPDIRIP-VISVVWSYAG-------LQP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           DD     +  Y   L + +           +    + + F  +        +VT   Q V
Sbjct: 58  DDMAGRIVTYYERTLGTTVNDVQHIESQSFRGYGIVKIFFQPTVDIRTATAQVTSVSQTV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++      + ++      D +     + +         Q+        
Sbjct: 118 LKQMPPGTTPPQILNYNASTVPVLQIALTSDTL--DEQKLADYAANFIRPQLLSVPGVAI 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++  + DP  L+    +   ++      N         +            
Sbjct: 176 PTPYGGKTREVQIDLDPQALQAKKLSAQDVATALAQQNQIIPAGTQKI------------ 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N  P T   +  +    +           ++        +   
Sbjct: 224 --------GRFEYNIKLNNSPLTLDQLNALPIKSVDGATIAIRDVAHVRDGYPPQSNIVR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                S    I        ++          +          G+ S  
Sbjct: 276 VDGHRAVLMSILKNGSASTLDIIAGVKAKLPLIEKTLPAGLKLVTMGDQSTFVKGAVSGV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               AI A L  +++ + +   +  L+   SI L V+  +A L+  G TL + ++ G+ L
Sbjct: 336 AREGAIAAALTSLMILLFLGSWRSTLIIAASIPLAVLAAIAALAASGETLNVMTLGGLAL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E +     + + V  ++  G  +  +  F S +   I  V +    G
Sbjct: 396 AVGILVDDATVTIENVNWHLEQGKDVRAAIMDGAMQIVTPAFVSLLCICIVFVPMLLLDG 455

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
              R   + M  +++ +M  + ++ R  +  + +Y          
Sbjct: 456 -IARFLFVPMAKAVIFAMIASFALSRTFVPMLAQYLLRPHASQGH 499



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 62/161 (38%), Gaps = 7/161 (4%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            + G+  +   + + I + F  W  A   ++ L   +   +          ++ A+   + 
Sbjct: 902  LFGLAGAIALIYLLIVVNFHSWSDAFVIVSALPAALAGIVWMLFATHTPLSVPALTGAIL 961

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G +  + ++V    R+  +L TT  +    ++          + T++A  I + PMA+
Sbjct: 962  CMGVATANSILVVSFARE--RLATTGNAMVAALEAGFTR-FRPVLMTALAMIIGMAPMAL 1018

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                GG         +  G+V A  +++ +   +   ++  
Sbjct: 1019 GLGDGGEQNAPLGRAVIGGLVCATFATLLLVPVVFSLVHRR 1059



 Score = 45.8 bits (106), Expect = 0.030,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 57/159 (35%), Gaps = 5/159 (3%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +  +  +++I +     W   L    ++ L +   +   A  G   N+  +  +   +G
Sbjct: 340 AIAAALTSLMI-LLFLGSWRSTLIIAASIPLAVLAAIAALAASGETLNVMTLGGLALAVG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +             R  I     + +  +  + +   I  +PM +  G
Sbjct: 399 ILVDDATVTIENVN---WHLEQGKDVRAAIMDGAMQIVTPAFVSLLCICIVFVPMLLLDG 455

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                F +PMA  ++ A  +S  ++   +  +  +  + 
Sbjct: 456 IARFLF-VPMAKAVIFAMIASFALSRTFVPMLAQYLLRP 493


>gi|189218112|ref|YP_001938754.1| silver efflux pump [Methylacidiphilum infernorum V4]
 gi|161075835|gb|ABX56665.1| copper efflux pump [Methylacidiphilum infernorum V4]
 gi|189184970|gb|ACD82155.1| Putative silver efflux pump [Methylacidiphilum infernorum V4]
          Length = 1076

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 78/687 (11%), Positives = 168/687 (24%), Gaps = 48/687 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   + IL      +G+   L        LD  P       I          +      
Sbjct: 11  KNPFLVFILVFFGIILGIYSIL-----HVPLDAIPDLSDVQVI---------VYTEWPGR 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +            K           ++ + + F D         +V  +L  
Sbjct: 57  SPTLVEDQITFPISTRFISAPKVKYVRGESMFGKSFVYVIFEDGTDLYWARSRVLEYLNT 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V + L  +    L    T                     E            +       
Sbjct: 117 VRANLPPNVVPTLGPDATGVGWVYEYV-LVDTSGRHTLSELRSFQDWTLRYGLASVHGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP++L        ++       N    G    V  +      + 
Sbjct: 176 EIASFGGYVRQYQVNIDPNKLLAYGVRFDEVVQAIQKSNQDVGGKSIEVSTVEFYIRGKG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  +I                    V +  D  G         +             
Sbjct: 236 YFRNLQDIG------------------SVVVKRDRRGIPVLVSQLGNLTIGGDLRFGVTD 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   +   +   +    I         L          I           S   
Sbjct: 278 FNGLGEVVGGVVVMRYGENALQVINGIKKKIQSLEPSFPKGVKLIPVYDRSELINRSIDT 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K        +V +V  + + + +   V    +   V+L     S    T  + S+ GI 
Sbjct: 338 LKKKLVEECLIVSVVCVIFLWHIRSSFVPIIMLPTAVVLAFIPFSSFHLTANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIRE----------ENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           + IG  VD+ I++ E                    +    L          +F S +   
Sbjct: 398 IAIGAMVDAAIVMVENAHRSLEEYKVLTGSEPSGPTRKEILLEASRNVGRPLFFSLLVIT 457

Query: 472 IATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G   +  A T   S+  +   ++++V  +MI  +R K +        
Sbjct: 458 VSFLPIFALEAQEGRLFKPLAFTKTFSMFFATLLSVTLVPPLMIGFVRGKIIPEQKNPVN 517

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
              F +   +    ++ R   + ++++    +   L   G  +      G  L +     
Sbjct: 518 RLLFFLYTPLLELALKHRLVVIALALVILGSTYYPLSKLGAEFMPPLNEGTILYMPTA-- 575

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V    +      L + D     F   +    +       +      +      +      
Sbjct: 576 VPGISISEASRFLNLQDRYLMTFPEVEMVFGKSGQADTATDPAPLSMTETVISLKPKEKW 635

Query: 649 STIQNTEIVGPKISRELIRKGIVGVII 675
               + + +  +++++L   G+  V  
Sbjct: 636 RKGMDWDKLIAEMNKKLHFPGVANVFW 662



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/209 (12%), Positives = 79/209 (37%), Gaps = 13/209 (6%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + ++ ++    + V L  + +   +  +    L +K +   +I ++  +I++W   
Sbjct: 302 NGIKKKIQSLEPSFPKGVKLIPVYDRSELINRSIDTLKKKLVEECLIVSVVCVIFLW--- 358

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMR 745
               +   I  L   +      F+ F +  N+ ++  +   IG  V+  +V+ +   R  
Sbjct: 359 HIRSSFVPIIMLPTAVVLAFIPFSSFHLTANIMSLGGIAIAIGAMVDAAIVMVENAHRSL 418

Query: 746 KNMKL----YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFA 798
           +  K+      +  + ++++ ++         ++ +   +S LP+         +    A
Sbjct: 419 EEYKVLTGSEPSGPTRKEILLEASRNVGRPLFFSLLVITVSFLPIFALEAQEGRLFKPLA 478

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               F +  A   S+ +  P+++     +
Sbjct: 479 FTKTFSMFFATLLSVTLVPPLMIGFVRGK 507



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 46/148 (31%), Gaps = 9/148 (6%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----DRM 744
                 L  +      +     F  + G   ++     ++ L G      VV+       +
Sbjct: 911  SLKRTLIVLLAFPFSLVGAFWFLYILGYNLSVAVAVGLIALAGIDAETGVVMLLYLDHAL 970

Query: 745  RK--NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
            R+        T       + +     +   V T  A    +LP+      G  V+   A 
Sbjct: 971  REAKQQGKMNTMDDLFKAVKEGAAGRIRPKVMTVCAILFGLLPILWSQETGADVMKRIAA 1030

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWR 827
            PM  G++ +A   + I   I +++    
Sbjct: 1031 PMVGGVITSALLELIIYPVIYIYLERKS 1058


>gi|217974610|ref|YP_002359361.1| acriflavin resistance protein [Shewanella baltica OS223]
 gi|217499745|gb|ACK47938.1| acriflavin resistance protein [Shewanella baltica OS223]
          Length = 1063

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 76/674 (11%), Positives = 175/674 (25%), Gaps = 45/674 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+    +L   +   GL            +       P   ++L         +     
Sbjct: 13  RNSVAANLLMWALLVGGLFS---------TVLINKEVFPSFELNL-----LNISVAYPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   + +  +E    +           +    IT+   D    + + D+  L L  
Sbjct: 59  APQEIEEGINIKIEEAIQDINGIKKVTSVASEGVGSITVEVEDGYEVQTVLDEAKLRLDA 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S   V+ +K  +      E +++      D  +    E +    +   D +    +  
Sbjct: 119 I-STFPVNIEKPNIYQIK-PENNVIWVSVYGDMTLHDMKELA----KSVRDDLTQLPAVT 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++  E    +LR+   T  +++      +    G           DG+  
Sbjct: 173 RAKVTGVRDYEIAIEVSEDKLREYGLTFTQVALAVQNSSFDLPGGSIRA-----QDGDIL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L       +G                    +        R        I       L+  
Sbjct: 228 LRTKGQAYTGDD--------------FANIVVTTRPDGSRVMLPQVATIKDDFEERLEYT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +               RA                   G  ++
Sbjct: 274 RFNGKPAAIIEVTSVDDQNALDIAAQVKQYVEDRRATLPANAQLDTWGDMTHYLKGRLNM 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL--LGATLTLPSIAG 419
                   A LV I+L M +   K        + +  + T+ ++ L     T+ + ++  
Sbjct: 334 MMSNMFYGALLVFIILAMFL-DLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFA 392

Query: 420 IVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +L +G+ VD  I++ E    E  R   SV   +      A    F    T      +L 
Sbjct: 393 FILVLGIVVDDAIVIGESAYTEVERHGHSVENVIRGAQKVAMPATFGVLTTIAAFIPMLM 452

Query: 479 FFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   +  +   + + L +  S+  +  I+ A +  +   K           +      
Sbjct: 453 VSGPMGIIWKSIGMVVILCLAFSLVESKFILPAHLAHMKFKKPGAPRGFFGRLKANFNDR 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R +               +    L+  +   G ++     + P D   V+ 
Sbjct: 513 VQHFIHHSYRNFLERCIKQRYNVVAAFIGVLILSIALVASGKVRWVFFPDIPSDFIQVQL 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++     + + +     +  L ++  +         V        +        + T+ 
Sbjct: 573 EMDEGSSEENTLKVVQSIEEALYKMNDKMEQDNGYQVVKHSFINMSSRTSAFIFAELTKG 632

Query: 657 VGPKISRELIRKGI 670
              ++    I    
Sbjct: 633 EDREVDGVTIAAAW 646



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 88/256 (34%), Gaps = 10/256 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       +               S    DG++   +              V E+ K  +
Sbjct: 778  IRTPTGTSVPFSTVAQIEKGESYASITRVDGKRAITITANANKNIVEPSKVVQEIQKDYL 837

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             ++        T + G  +  +    G++ G   +   +   + I  K  ++   I   +
Sbjct: 838  PQLQAKYPKIQTALDGGSLDEQNAMVGLMQGFFFALFTIYALMAIPLK-SYSQPLIIMSV 896

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +        F     G+  ++ ++  ++ L G  VND +++ D +    +      S R 
Sbjct: 897  IPFGIIGALFGHLIQGLAMSVLSLCGIVALAGVVVNDSLILVDFVN---RAREQGQSVRQ 953

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                S        + TS+  F+ ++P+ +       ++   A  +AFGI+ +   ++ + 
Sbjct: 954  AAVDSGCYRFRAIILTSLTTFVGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILV 1013

Query: 817  APILLFIYDWRAKNAR 832
              + + + D    ++R
Sbjct: 1014 PLLYIILDDVSRSSSR 1029



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 89/280 (31%), Gaps = 8/280 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI      I L        G DF   +         V L  V +  +  +      +   
Sbjct: 218 SIRAQDGDILLRTKGQAYTGDDFANIVVTTRPDGSRVMLPQVATIKDDFEERLEYTRFNG 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +        +++     ++   +     +P +   +T        +  +   +  
Sbjct: 278 KPAAIIEVTSVDDQNALDIAAQVKQYVEDRRATLPANAQLDTWGDMTHYLKGRLNMMMSN 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
           +   A+ + I + +      A   +  L +    T+    L  F +  N+  + A + ++
Sbjct: 338 MFYGALLVFIILAMFLDLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFAFILVL 397

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ +      ++     S  ++I  +    +  +    +    + +PM +  
Sbjct: 398 GIVVDDAIVIGESA--YTEVERHGHSVENVIRGAQKVAMPATFG-VLTTIAAFIPMLMVS 454

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G +     S  + +   +  +   S FI    L  +   +
Sbjct: 455 GPMGIIWKSIGMVVILCLAFSLVESKFILPAHLAHMKFKK 494


>gi|221068250|ref|ZP_03544355.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
 gi|220713273|gb|EED68641.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
          Length = 1029

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 86/653 (13%), Positives = 200/653 (30%), Gaps = 50/653 (7%)

Query: 54  SHLVLEVDE------DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF 107
           +++ ++V         + +  F+ +  +   + L          +   + ITL F ++  
Sbjct: 43  TNVQVQVATEAPGRSPEEIERFVTVPLEIAMTGLPGLAEMRSLNKSGLSIITLVFTEATD 102

Query: 108 KENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
                  VT  L  V  ++       L   +T        + ++ D       +  +   
Sbjct: 103 VYFARQLVTERLIEVTPRMPEGIVPVLGPVSTGLGEVYQYTLDHPDDGERELTQAELTER 162

Query: 168 RQRIDQ-----IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNS 222
           R   D      +       +       + Q     DP+RLR    +  ++       N +
Sbjct: 163 RTIQDWVARPLLRSIPGVAEINSQGGYVKQYQVLVDPARLRHYNLSVRQVVQAVADNNAN 222

Query: 223 KKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRF 282
             G +      +       ++    +I  I L               V I  +       
Sbjct: 223 ASGGILPQVTEQYLIRGVGMIRSLDDIGNIVLKEQGGVPVYVRDVAKVQIDAEVRQGAII 282

Query: 283 FEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI 342
                +++   + ++                          T     +     +      
Sbjct: 283 KGGYTESVSGIVLMMR-----------------GGNAKEVVTRVKERVAEINSKGMLPGG 325

Query: 343 KLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTL 402
              +           +             LV++VLF+ +   +  L+   ++ +  + T 
Sbjct: 326 LQIVPYYDRTDLVDSALWTVGKVLIEGIFLVVVVLFIFLGDVRSSLIVVATLVITPLTTF 385

Query: 403 ALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE-----NRKNQSVFCSLDMGFS 457
            L++  G +  L S+ G+ + IGL VD+ ++V E +  +     + + + +   L     
Sbjct: 386 ILMNRYGISANLMSLGGLAIAIGLMVDATVVVVENVFHKLGQAGDSRGERIRTVLSATVE 445

Query: 458 RAYSTIFDSNITALIATVVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMI-FI 514
            A  TIF   I  L+   ++   G  G      A+T+ +++ IS+  ++ +   +   F+
Sbjct: 446 VATPTIFGIAIIILVFLPLMTLQGIEGKMFGPLALTIAMALAISLAVSLFLSPVLCSYFL 505

Query: 515 IRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR--------------FWGVGISILFSICS 560
                  +  I  L R +L     A    R                F  +G S + ++  
Sbjct: 506 KGGADHDTKLIAFLKRHYLRLLDGATARNRLTLAVAVALLIGSLGLFPFLGKSFMPTMKE 565

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
             L         I     I++ + A + V       ++ S      S  +  G       
Sbjct: 566 GALTPQINRVPSISLDESIRMEMAAMKEVAQVPGVKSVVSKLGRGESPADPAGPNESDPI 625

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +   P    +Q  + E +++++++I  +  + +  I           +  + V
Sbjct: 626 VLLDPESERSQDEIDEDIRQRLSKIPGVQIVLSQPISERVDEMVTGVRSQLAV 678



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 77/217 (35%), Gaps = 9/217 (4%)

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
            G    +  +        A+  V  + ++              +IV      +L+   + 
Sbjct: 284 GGYTESVSGIVLMMRGGNAKEVVTRVKERVAEINSKGMLPGGLQIVPYYDRTDLVDSALW 343

Query: 672 GVIISAI-AMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            V    I  + + + + F        +L  + TL++    T      +GI  NL ++  +
Sbjct: 344 TVGKVLIEGIFLVVVVLFIFLGDVRSSLIVVATLVITPLTTFILMNRYGISANLMSLGGL 403

Query: 727 LTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
              IG  V+  VVV + +   + +   +       +  +  E    +++      +  LP
Sbjct: 404 AIAIGLMVDATVVVVENVFHKLGQAGDSRGERIRTVLSATVEVATPTIFGIAIIILVFLP 463

Query: 786 MAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPI 819
           +    G     F   A+ +A  + ++ + S+F++  +
Sbjct: 464 LMTLQGIEGKMFGPLALTIAMALAISLAVSLFLSPVL 500



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 8/120 (6%)

Query: 694  LGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            L ++  L+L      G   LF  G   ++ A    + L G +V + VV+   +R    L 
Sbjct: 891  LASLIILVLPFASIGGLIGLFVTGEYVSVPASVGFIALWGIAVLNGVVLVSSIR---HLR 947

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
               +   + + +   +     + T+  A + ++P       G  V    AI +  G++ +
Sbjct: 948  QEGMEVAEAVREGCTQRFRPVMMTATVALLGLVPFLFATGPGSEVQRPLAIVVIGGLITS 1007


>gi|92109495|ref|YP_571782.1| heavy metal efflux pump CzcA [Nitrobacter hamburgensis X14]
 gi|91802577|gb|ABE64950.1| Heavy metal efflux pump CzcA [Nitrobacter hamburgensis X14]
          Length = 1060

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 75/584 (12%), Positives = 162/584 (27%), Gaps = 40/584 (6%)

Query: 12  SMICCIGLLIALPNFLPQS---MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            ++   G   A    +       LD  P       I          +          +  
Sbjct: 13  LLLVFFGTGFAAAAGIYALVHLPLDAIPDLSDTQVI---------VYTEYPGQAPQVIED 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +          +    +         + + + F D         +V   L    S+L  
Sbjct: 64  QVTYPLTTAMLTVPHSKVVRGFSFFGVSFVYVIFKDGTDIYWARSRVLESLNSAASRLPA 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                +    T        +  + +  +S                +  +E   +      
Sbjct: 124 GVTPTIGPDATGVGWVYQYAVMSKELNLSDTRAIQD---WNLKFALAKAEGVAEVASVGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            + Q     DP R+R L  T  KM       N    G    +         +  ++D  +
Sbjct: 181 FVKQYNVILDPQRMRDLGITMQKMRDAIRASNADVGGRTVELSEFEYVIRGKGYLKDIND 240

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +                      +     G     +        P        +     +
Sbjct: 241 LG-------------------SIVLKTNNGTPVLLKDVARVELGPDERRGIAELNGEGEV 281

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +   +    I         + +        +         + + +  K T   
Sbjct: 282 TSGIVLQRFGGNALDVIRNVKKRFKEIASSLPKSVDIVPVYDRSNLIIAAIATLKHTLLE 341

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + +V +V  + +L+ +  LVA   + + V++    + LLG    + S+ GI + IG  V
Sbjct: 342 ESAVVALVCIIFLLHVRSALVAILMLPVGVLMAFGAMKLLGLGSNIMSLGGIAIAIGAMV 401

Query: 429 DSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           D+ I++ E   +        +S    L    S     +F S +   ++ + +F      G
Sbjct: 402 DAAIVMIENAHKHLERAEPGRSRVNILIDAASEVGPALFFSLLIITVSFMPIFTLESQEG 461

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   S+  +   ++++V A+MI  +R + +             I   +    
Sbjct: 462 RMFSPLAFTKTFSMAAAALLSVTLVPALMIVCVRGRIVPEHKNPINRFLIWIYRPVIRGV 521

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           MRA+   + +++     S+      G  +  +   G  L +   
Sbjct: 522 MRAKTLVILLALGVLAVSVWPARQLGTEFMPNLNEGTLLYMPTT 565



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             +++ + ++  + +R     AL AI  L + +    G   L G+  N+ ++  +   IG
Sbjct: 343 SAVVALVCIIFLLHVR----SALVAILMLPVGVLMAFGAMKLLGLGSNIMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+  +V+ +   K+++      S  +++  + +E      ++ +   +S +P+     
Sbjct: 399 AMVDAAIVMIENAHKHLERAEPGRSRVNILIDAASEVGPALFFSLLIITVSFMPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRMFSPLAFTKTFSMAAAALLSVTLVPALMIVCVRGR 497



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 51/152 (33%), Gaps = 19/152 (12%)

Query: 697  ITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVY------------D 742
            I  L L      G       G   ++      + L G +    VV+              
Sbjct: 888  IVMLSLPFALVGGLWLMWALGFNLSVAVAVGFIALAGVAAETGVVMLIYLNQALAEIKAR 947

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
            R+ +   L  T     D + +   E +   + T +A    +LP+      G  ++   A+
Sbjct: 948  RLIEGRALMRT--DLYDAVMEGAVERVRPKMMTVVAIMAGLLPIMWSTGTGSEIMQRIAV 1005

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            PM  G++ +   ++ +   I   +  +R  N 
Sbjct: 1006 PMIGGMISSTLLTLIVIPAIFALVKGFRLPNG 1037


>gi|299532925|ref|ZP_07046312.1| Co/Zn/Cd efflux pump protein CzcA [Comamonas testosteroni S44]
 gi|298719149|gb|EFI60119.1| Co/Zn/Cd efflux pump protein CzcA [Comamonas testosteroni S44]
          Length = 1040

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 59/601 (9%), Positives = 152/601 (25%), Gaps = 62/601 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L ++      +        +  +D  P                   + +      
Sbjct: 13  RWLVMLATLALVGLGIY----NYQRLPIDAVPDITN-------------VQVQINTSAPG 55

Query: 65  F----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +    + + + L          R   +++T+ F D          V   +Q
Sbjct: 56  YSPLETEQRVTFPIETVMAGLPGLEQTRSLSRYGLSQVTVVFKDGTDIYFARQLVNERMQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS------HAIEQSMEIIRQRIDQI 174
                L       L   +T      + +    +            ++           Q+
Sbjct: 116 QARDALPAGVAPALGPISTGLGEIYLWTVEADEGATRPDGSPYTPMDLREIQDWVIKPQL 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +         +      P +L     T A +       N +            
Sbjct: 176 RNVAGVTEINSIGGFAKEYLVAPQPQKLAAYGFTLADIVAALERNNANVGAGYIE----- 230

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
              G QYL+    ++ GI                + ++                ++G   
Sbjct: 231 -RQGEQYLIRAPGQVGGI--------------ADIREVIVGSAQGLPIRVRDLADVGLGR 275

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +       ++     P    +        
Sbjct: 276 ELRTGAATDNGREVVLGTVFMLIGENSRAVAQAVHERMQVINKSLPPGVKAVTVYDRTNL 335

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ +LF+ +   +  L+    I L+++ T   +  +  +  L
Sbjct: 336 VDKAIATVKKNLIEGAALVVAILFLFLGNLRAALITALIIPLSMLFTFTGMVQMRVSANL 395

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIF 464
            S+  +  GI   +D  +++ E                      F  +      A   + 
Sbjct: 396 MSLGALDFGII--IDGAVVIVENCVRRLAHAQAAAGRSLTRSERFEEVFAAAREARRPLL 453

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +  ++  + +F      G      A+T+ +++L +M  +I+ + A +   +  K  +
Sbjct: 454 FGQLIIMVVYLPIFALTGVEGKMFHPMALTVVIALLGAMLLSITFIPAAIALFMGDKVAE 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +              S++ ++  +              +G   +
Sbjct: 514 KENRLMEWARRAYAPVLDKVMHAPAVVLTAASVIVALSLLLATRMGSEFAPNLNEGDFAI 573

Query: 582 G 582
            
Sbjct: 574 Q 574



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 78/217 (35%), Gaps = 8/217 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ ++++     Q    +    + +          + V +  ++     +P        
Sbjct: 808  SSVATVELAPGPNQVSREDGKRRIVVSANVRGRDIGSFVAQAQQELEGVALPAGYWTRWG 867

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                 +     ++ ++ V ++   +   ++  F      L   T +   +T  +    L 
Sbjct: 868  GTFENL-ESARQRLMIVVPVALALVFTLLFAMFGNVRDGLIVFTGIPFALTGGIAALWLR 926

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  +++A    + L G +V + +V+   +R    L    +     + +     L   + 
Sbjct: 927  GIPLSISAAIGFIALCGVAVLNGLVMISYIR---SLREQGMDLEQAVTEGALTRLRPVLM 983

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
            T++ A +  +PMA+    G  V    A  +  GI+ +
Sbjct: 984  TALVASLGFVPMAIATGTGAEVQRPLATVVIGGILSS 1020



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 43/269 (15%), Positives = 87/269 (32%), Gaps = 19/269 (7%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+      L +   +L  + +G         +    V L          +R +     +
Sbjct: 252 EVIVGSAQGLPIRVRDLADVGLGRELRTGAATDNGREVVLGTVFMLIGENSRAVAQAVHE 311

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGA 696
             +++  S     + V       L+ K I  V       +A+ + I          AL  
Sbjct: 312 RMQVINKSLPPGVKAVTVYDRTNLVDKAIATVKKNLIEGAALVVAILFLFLGNLRAALIT 371

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT---- 752
              + L +  T        +  NL ++ A+    G  ++  VV+ +   + +        
Sbjct: 372 ALIIPLSMLFTFTGMVQMRVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQAAAG 429

Query: 753 ---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIV 806
              T     + +  +  E     ++  +   +  LP+    G    +    A+ +   ++
Sbjct: 430 RSLTRSERFEEVFAAAREARRPLLFGQLIIMVVYLPIFALTGVEGKMFHPMALTVVIALL 489

Query: 807 VAASSSI-FIAAPILLFIYDW-RAKNARI 833
            A   SI FI A I LF+ D    K  R+
Sbjct: 490 GAMLLSITFIPAAIALFMGDKVAEKENRL 518


>gi|169883788|gb|ACA97990.1| CzrA [Pseudomonas aeruginosa]
          Length = 1051

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/596 (10%), Positives = 150/596 (25%), Gaps = 62/596 (10%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  +G+         +  +D  P                 +++ ++++          
Sbjct: 16  VLLAVLGMAGVGIGSYQKLSIDAVPDI---------------TNVQVQINTAAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +    + + + L          R   +++T+ F +         +V   L     +
Sbjct: 61  VEQRVTYPVETVVAGLPGLQETRSLSRPGISQVTVIFEEGTDIYFARQQVNERLSTAREQ 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH------AIEQSMEIIRQRIDQIGISES 179
           L  D    L   +T      + +    +             +           Q+   + 
Sbjct: 121 LPEDISPTLGPISTGLGEIYLWTVEAEEGATKEDGSAYTPTDLRTIQDWIIRPQLRNVKG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         Q     DP +L     T   +    +  N +        R  +     
Sbjct: 181 VAEINTIGGYAKQFLIAPDPKKLAAYKLTLGDLQNAVLRNNENVGAGYIERRGEQLLIRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+D  ++ G                    I    +            +G    +   
Sbjct: 241 PGQVKDMDDVRG--------------------IIVSNVDGVPIRIRDVAEVGLGKELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +  G     +          I           + 
Sbjct: 281 AATENGREVVLGTVFMLIGENSREVAQAVGQRLEEINRTLPKGVKAITVYDRTTLVDKAV 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+ VLF+ +   +  L+    I L+++ T   +     +  L S+  
Sbjct: 341 ATVKKNLVEGAALVIAVLFLFLGNIRAALITATIIPLSMLFTFTGMVGNRVSANLMSLGA 400

Query: 420 IVLGIGLAVDSNILVNER-----IREENRKNQSVFCS-----LDMGFSRAYSTIFDSNIT 469
           +  GI   VD  +++ E         +    + +  +     +      A   +    I 
Sbjct: 401 LDFGII--VDGAVVIVENAIRRLAHAQAHHGRQLTRAERFHEVSAASREARRALVFGQII 458

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++  + +F      G      A T+  ++L +M  +++ V A +   I  K  +  +  
Sbjct: 459 IMVVYLPIFALTGVEGKMFHPMAFTVVTALLGAMILSVTFVPAAIALFITGKVKEEENFV 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                      +            G      +  +              +G   + 
Sbjct: 519 MRRARLAYXPALRWVLGHRALVVGGALGAILLTGLVASRMGSEFIPSLSEGDFAMQ 574



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+  GI  +++A    + L G +V + +V+   +R    L     S    +
Sbjct: 915  FALTGGVLALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIR---NLLQEGRSLDQAV 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 972  WEGAITRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTMLTLLVLPV 1031

Query: 819  ILLFIYDW 826
            +  + +  
Sbjct: 1032 LYRWTHGR 1039



 Score = 37.7 bits (85), Expect = 8.2,   Method: Composition-based stats.
 Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 13/165 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V  +A+ + +          AL   T + L +  T        +  NL ++ A+    G 
Sbjct: 348 VEGAALVIAVLFLFLGNIRAALITATIIPLSMLFTFTGMVGNRVSANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDRM--RKNMKLYTTSISFRDL-----IDKSINETLGRSVYTSMAAFISVLP 785
            V+  VV+ +    R                    +  +  E     V+  +   +  LP
Sbjct: 406 IVDGAVVIVENAIRRLAHAQAHHGRQLTRAERFHEVSAASREARRALVFGQIIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW 826
           +    G    +    A  +   ++ A   S+ F+ A I LFI   
Sbjct: 466 IFALTGVEGKMFHPMAFTVVTALLGAMILSVTFVPAAIALFITGK 510


>gi|15606386|ref|NP_213766.1| AcrB/AcrD/AcrF family cation efflux protein [Aquifex aeolicus VF5]
 gi|2983589|gb|AAC07160.1| cation efflux system (AcrB/AcrD/AcrF family) [Aquifex aeolicus VF5]
          Length = 1050

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 79/660 (11%), Positives = 183/660 (27%), Gaps = 40/660 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N   ++  S+        +L     ++ +D  P       I          +       
Sbjct: 10  RNRLPILFISIFLLFYGYYSL----KKTPIDAIPDLSDVQVI---------IYSEWIGQI 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   L          + K            + + + F D         +V   L  +
Sbjct: 57  PQVIEDQLTYPLVTNMMGVPKVKTVRGYSFPNFSLVFVIFEDGTDLYWARSRVLEKLSSI 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L  D +  L    T           +  + +                 +       +
Sbjct: 117 RSQLPQDARIELGPDATGVGWVYKYVLVSKKRTLEELWALQNF---YIKYALLSIPDVAE 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    +      P +L Q   +  ++       N    G    +            
Sbjct: 174 VASVGGFEKEYRILVKPEKLYQYGISLGELYRAIKRTNVETGGKYVEINEKEYLIRAVGY 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V+++ EI                      +  +  G     E     +  P   +     
Sbjct: 234 VKNREEIE-------------------KTVVAERDGVPIRLEDVAKVVEVPAFRMGVADF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +        I+        ++ G       +           +    
Sbjct: 275 NGMGDTVAGIVVMRFGADAYKVIQRVKEKLEEVKKGLPEDVQVLTAYDRSTLIESAIENL 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K      + +VL+++ + + + +  LV    + L+++ T A+++ LG T  + S+ GI +
Sbjct: 335 KRKLIEESVVVLLIVGIFLFHVRSALVIIIFLVLSILTTFAVMNHLGITSNIMSLGGIAI 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
            IG  VD+ I++ E I     + + ++ ++          IF + +   ++ V LF    
Sbjct: 395 AIGTMVDAAIVLVENIHRRLEEGEKLWDAIVHSAKDVGKPIFFALLIVTVSFVPLFALEG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G        T  LS+LI+   ++ +V  +  + IR +         +     + D + 
Sbjct: 455 QAGRLFEPLVATKTLSMLIASIISVIVVPVLAYYFIRGRIPGEEKNPLVKLLIKVYDPVF 514

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
              ++ R+  + + I   + +  L    G  +      G  + +     V     +  L 
Sbjct: 515 HISIKLRYLLLILFIFMGVATFYLYEKLGREFMPPLNEGTLMYMPTT--VPSVSRQEMLR 572

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            L I D   + F   ++ L +       +      +      +        ++       
Sbjct: 573 ILNIQDRILKEFPEVESVLGKAGRANTPTDPAPMSMIETFITLKPQEEWRKVKVERFYSD 632



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/199 (19%), Positives = 75/199 (37%), Gaps = 9/199 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              LE VKK + E V + T  +   +       L RK I   ++  + + I++   F   
Sbjct: 301 KEKLEEVKKGLPEDVQVLTAYDRSTLIESAIENLKRKLIEESVVVLLIVGIFL---FHVR 357

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            AL  I  L+L I  T       GI  N+ ++  +   IG  V+  +V+ + +    +  
Sbjct: 358 SALVIIIFLVLSILTTFAVMNHLGITSNIMSLGGIAIAIGTMVDAAIVLVENIH---RRL 414

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMA---FGIVVA 808
                  D I  S  +      +  +   +S +P+    G     F   +A     +++A
Sbjct: 415 EEGEKLWDAIVHSAKDVGKPIFFALLIVTVSFVPLFALEGQAGRLFEPLVATKTLSMLIA 474

Query: 809 ASSSIFIAAPILLFIYDWR 827
           +  S+ +   +  +    R
Sbjct: 475 SIISVIVVPVLAYYFIRGR 493



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 93/264 (35%), Gaps = 7/264 (2%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            GI      +L  L     D  V  S +  + + +            +  +   P   V  
Sbjct: 784  GIPLDYRYELETLTIPMKDKFVPLSAVADVVVKESPSSIKSENGLLVSYVFVTPDPEVDM 843

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGP-KISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
              V+E  +K + E + L      E  G  +  ++ +    V V    + +++ +W  F  
Sbjct: 844  GTVIERAEKVLKENLKLPKGYYYEWSGQFEYWKKALENLKVIVPSVILLIILLVWFTFNK 903

Query: 691  YF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             F     + TL +     +    L     ++ ++A  L L+G +    +V+   ++  +K
Sbjct: 904  LFETFLVLITLPIATFGGVLLMYLLNYNISIASIAGFLALLGIAAEMGIVMVVYIQNALK 963

Query: 750  --LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                 +     + I K   + +     T  A  I +LP+ +    G  V+   A PM  G
Sbjct: 964  ESEIRSKKDAFEAIYKGAVKRIRPKFMTFGAILIGLLPIMLGHGTGSEVMSRIAAPMVGG 1023

Query: 805  IVVAASSSIFIAAPILLFIYDWRA 828
            I+      + I   +     D+R 
Sbjct: 1024 ILSTIVIVLIIVPALYAIYVDFRR 1047


>gi|299137238|ref|ZP_07030420.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
 gi|298600643|gb|EFI56799.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX8]
          Length = 1033

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 72/547 (13%), Positives = 155/547 (28%), Gaps = 39/547 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+   +      +   G+  AL   +       FP      R+ +G+D     + V+ V+
Sbjct: 13  RSTRTVFFFVFALTMAGVWAALRVPISVFPETNFP------RVVIGVD-----NGVMPVE 61

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + +     +    +   + +        +  +   +I+L F  S    +    V   +  
Sbjct: 62  QMEVT---ITKPIESAVNSVPGLVTVRSNTSRGSAEISLFFDWSVDMFHTLQLVNAAMST 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L     K      T     I+      D V     +            +       
Sbjct: 119 VQQSLPATA-KITTNRLTFATFPILGYSLTSDTV--SQTQLWELATYDLAPPLNRVPGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   + +     + ++L+    T   ++      N      ++     +D      
Sbjct: 176 TVTVQGGKVPEFHVVPNLAKLQAAGVTILDLTNAIQAANIIDSPGLYE----QDHQLVLG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           LV  +V                        +                 +      V    
Sbjct: 232 LVGAQV---------------HDIDGLRQLVVKTTASGTAIRVGDIAQVVDATMPVYTVV 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + ++  +     +      A L+    P                S S 
Sbjct: 277 TANGKAAVLINITRQSSGNTVAVADQVAAEIAQLQKKLPPGVTLKPYYDQSQLVRESISS 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   L  ++LF+ +   +  L+A   I + V +T+  L ++G +  L ++ G+ 
Sbjct: 337 VRDAIFLGLVLACVILFVFLHDWRSSLIAGLVIPVTVAVTILFLWVIGESFNLMTLGGLA 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
             IGL +D  I+V E I       +    ++          +  S IT ++  + L    
Sbjct: 397 AAIGLVIDDAIVVVENIVLHRDAGEHRVEAVRKALREIMRPLIGSTITPVVVFLPLVAVT 456

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R  AITM +S+L S+  A++    + I ++R     +   +            
Sbjct: 457 GVTGSFFRALAITMTVSLLTSLVLALTWTPGLGIVLLRSHSGDTKPKDTSGHPEPGRALA 516

Query: 539 AIQFMRA 545
            +     
Sbjct: 517 RVMQWHR 523



 Score = 73.6 bits (178), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 92/272 (33%), Gaps = 10/272 (3%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           +  S         L+         D  G  QL V          V    + +      + 
Sbjct: 215 IIDSPGLYEQDHQLVLGLVGAQVHDIDGLRQLVVKTTASGTAIRVGDIAQVVDATMPVYT 274

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                    V +      S     V + V  +I ++        T       S+ +    
Sbjct: 275 VVTANGKAAVLINITRQSSGNTVAVADQVAAEIAQLQKKLPPGVTLKPYYDQSQLVRESI 334

Query: 670 -----IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                 + + +    +++++     W  +L A   + + +  T+ F  + G  FNL  + 
Sbjct: 335 SSVRDAIFLGLVLACVILFV-FLHDWRSSLIAGLVIPVTVAVTILFLWVIGESFNLMTLG 393

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            +   IG  ++D +VV + +   +          + + K++ E +   + +++   +  L
Sbjct: 394 GLAAAIGLVIDDAIVVVENI---VLHRDAGEHRVEAVRKALREIMRPLIGSTITPVVVFL 450

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           P+    G   GSF   +A  + V+  +S+ +A
Sbjct: 451 PLVAVTGVT-GSFFRALAITMTVSLLTSLVLA 481



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 13/149 (8%)

Query: 688  FKWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---R 743
            F+   A  AI    +L I   +    + GI FN+ +   ++ +IG    + +++ D   R
Sbjct: 887  FRNLSAPVAILASSVLSIAGVVFALLVTGISFNVASFMGLIMVIGIVAKNGILLLDADER 946

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-AVWGGSV--IGSFAIP 800
             R          S RD +  +    L   + T++AA   +LP+   +G     +   AI 
Sbjct: 947  FRTE------GASARDAMLFAAQRRLRPILMTAVAAVCGMLPLAFAFGAGSKMLQPLAIA 1000

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +  G+ ++   S+ +   +   +     +
Sbjct: 1001 VIGGLALSMLLSLVVTPVVYYLLTRNEER 1029


>gi|295134072|ref|YP_003584748.1| transport related hypothetical protein [Zunongwangia profunda
           SM-A87]
 gi|294982087|gb|ADF52552.1| putative transport related membrane protein [Zunongwangia profunda
           SM-A87]
          Length = 923

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/615 (10%), Positives = 158/615 (25%), Gaps = 27/615 (4%)

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
              +++GF+     ++  F+       F   Q    + LSF           +V   +  
Sbjct: 29  SPAYMDGFMSNEFQKVLVFVGGVKNMEFKSVQGLTLMKLSFYPGTDMAQAQAEVATQVSR 88

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L        +V        +       D       E     I +            
Sbjct: 89  AMAFLPPGAVPPQVVRFDAGAQPVGQIVFESD--QRSTGELQNLAITRIRPSFVNIPGIS 146

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                   +  +     P  ++    T   +       N         +           
Sbjct: 147 APAPFGGNVRTMVINVKPEEMQAYGLTADNILEAVAKNNFPSPAGNVQIGNTNYMAPVNT 206

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L   + +     +                            F      +           
Sbjct: 207 LELSREDFMNTPIKT--------------------GSGPTVFVRDVATVIDGADKTTAYA 246

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +             KA  S    I        ML                      + S 
Sbjct: 247 LANGKRTVYLPIIKKADASTLAAINNLKDAMPMLSDALPEDVSIKFVFDQSTYIENALSN 306

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 + A L  +++ + +   +  L+   +I + V+  + +L LLG T+ + +++G+ 
Sbjct: 307 LLHEGILGAVLTGLMVLLFLGDKRGALIVVLTIPIAVLTAIIMLYLLGQTINIMTLSGLA 366

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLF 478
           L IG+ VD   +  E I +     ++   ++             I    +  LI + ++ 
Sbjct: 367 LSIGILVDEATVTIENIHQHFEMEKTKQRAILDALLEISIPKLLILLCILAVLIPSFMMV 426

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
                     +I +G +++ S   + + +  +  +I++    K  D             +
Sbjct: 427 GIPRDMFMPLSIAVGSAMIASFLASQTFIPVVANWIMKKHPQKHSDTKKSRFDRFKGRYL 486

Query: 539 AI--QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                  R +       +L  I    +LF       +   G   L +    PV  ++ ++
Sbjct: 487 KFILHNERIKTPIFFGYLLVVITLSGILFVFIGTDILPPSGSKDLQLRIKAPVGSALDQT 546

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
               L + +   +    E   +                + +      E +   ++  +  
Sbjct: 547 EDYVLAVENHIRKQITPEDLEVTSGFVGMHSPNTPINPIFLFTSGSQEAILQFSLAESFE 606

Query: 657 VGPKISRELIRKGIV 671
                 ++ +R  + 
Sbjct: 607 GSVDELKDNLRSSLK 621



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/277 (10%), Positives = 88/277 (31%), Gaps = 5/277 (1%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
              +  +   + L    +      +   +   V +  V + ++                 
Sbjct: 195 IGNTNYMAPVNTLELSREDFMNTPIKTGSGPTVFVRDVATVIDGADKTTAYALANGKRTV 254

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVII 675
           +L  ++     ++A    L+     +++ +P                  +   +  G++ 
Sbjct: 255 YLPIIKKADASTLAAINNLKDAMPMLSDALPEDVSIKFVFDQSTYIENALSNLLHEGILG 314

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           + +  L+ +        AL  + T+ + +   +    L G   N+  ++ +   IG  V+
Sbjct: 315 AVLTGLMVLLFLGDKRGALIVVLTIPIAVLTAIIMLYLLGQTINIMTLSGLALSIGILVD 374

Query: 736 DKVVVYDRMRK--NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           +  V  + + +   M+          L++ SI + L   +   +A  I    M      +
Sbjct: 375 EATVTIENIHQHFEMEKTKQRAILDALLEISIPKLL--ILLCILAVLIPSFMMVGIPRDM 432

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
               +I +   ++ +  +S      +  +I     + 
Sbjct: 433 FMPLSIAVGSAMIASFLASQTFIPVVANWIMKKHPQK 469


>gi|189426511|ref|YP_001953688.1| acriflavin resistance protein [Geobacter lovleyi SZ]
 gi|189422770|gb|ACD97168.1| acriflavin resistance protein [Geobacter lovleyi SZ]
          Length = 1074

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/622 (11%), Positives = 195/622 (31%), Gaps = 16/622 (2%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            +L +       +   +    +     +          R     IT+ +   +  E    
Sbjct: 53  VYLPMPGSTPQEIQERVVKPLEGRLWEISGVEYLYSMSRPGMGVITVRYKVGQNMEESLV 112

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           K+   +      L +   +  +V  +  ++ I+      D+     + +   + R+  D+
Sbjct: 113 KLYNKVMSNRGLLPLGAAEPQVVAKSIDDVPILALTLWSDRYDHAMLRK---VAREVCDE 169

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +  S++  +      +  Q+    D SRL     +  +++      N +     F     
Sbjct: 170 LKKSDNVSEAEIKGGLTRQVRVTLDASRLAGYSLSPLQVAGTLQAGNKALPSGAFSGANK 229

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                    ++++  +  + +               +  +  E     F  +      K 
Sbjct: 230 EMLVETGSFLDNQEALRQLVVGVHGGKPVYLDDVAKIADTVKEPDDYVFMGMGPAAADKG 289

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
               L G             + +   +  +  +        L+   +P  + +   RN G
Sbjct: 290 ----LTGNRAQDYPAVTVSIAKRKGANATWVADDLVKKVEFLKGKVIPSDVQVTVTRNYG 345

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                 +        +A + + +L  + +  + G VA  +I + + LT+ +  L+G TL 
Sbjct: 346 ETAREKNNELLFHMFLAAISVTILIALFMGWRAGAVAAIAIPVTLALTMLIFYLIGYTLN 405

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALI 472
             ++  ++  IG+ VD  I+V E I             +         +    +    + 
Sbjct: 406 RITLFALIFSIGILVDDAIVVVENIHRYFTTTVMKPLEAAIKAVDEIGNPTVLATFAVIA 465

Query: 473 ATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS--IDINP 527
           + + + F G   G  +R   +   +++L+SMF A  +       +++        +  + 
Sbjct: 466 SILPMGFVGGLMGPYMRPIPVGASMAMLLSMFIAFIVTPYFAYRLMKGHHESEDDLAESK 525

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTH---GLNYGIDFKGGIQLGVL 584
           L+ F+       +  ++ R   + + +L  + +  L++           D K  +Q+ + 
Sbjct: 526 LTIFYRHWMGRLLHDVKLRNGFLALVVLLLLGACSLIYFKAVTVKMLPFDNKNELQVIID 585

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
           A     L         +     S       ++++        + + +   L         
Sbjct: 586 APEGTPLEQTARMTREMGDALRSVPEVTDFQSYVGTSSPFNFNGLVRHYFLRKGPNLADI 645

Query: 645 IVPLSTIQNTEIVGPKISRELI 666
            V L      +     I++++ 
Sbjct: 646 QVNLQHKTERKAQSHDIAKKIR 667



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/156 (19%), Positives = 67/156 (42%), Gaps = 5/156 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++AI++ I I +   W     A   + + +  T+  F L G   N   + A++  IG 
Sbjct: 359 MFLAAISVTILIALFMGWRAGAVAAIAIPVTLALTMLIFYLIGYTLNRITLFALIFSIGI 418

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + + +     TT +   +   K+++E    +V  + A   S+LPM   GG 
Sbjct: 419 LVDDAIVVVENIHRYFT--TTVMKPLEAAIKAVDEIGNPTVLATFAVIASILPMGFVGGL 476

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +   +    +  +  ++++   +  +       +  
Sbjct: 477 MGPYMRPIPVGASMAMLLSMFIAFIVTPYFAYRLMK 512



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 64/171 (37%), Gaps = 6/171 (3%)

Query: 661  ISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFN 719
            I+ E+ R   +      + + I +   FK +   +  +  + L +   L   ALFG  F 
Sbjct: 897  ITYEVFRDLGIAFAAVMVLIYILVVAWFKDFTTPIVIMAPIPLTLIGILPGHALFGAFFT 956

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
             T++   + L G  V + +++ D     MK     +   + I ++        + T+ A 
Sbjct: 957  ATSMIGFIALAGIIVRNSIILID--FAEMKRKE-GMKLDEAIIEAGAVRFRPMLLTAAAV 1013

Query: 780  FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             +    +      +    AI M  G + + + S      +   +  W+ ++
Sbjct: 1014 VVGSFVIVF--DPIFQGLAIAMMCGEIASTTLSRVTIPILYYLVQGWKERH 1062


>gi|94499710|ref|ZP_01306247.1| heavy metal efflux pump, CzcA family protein [Oceanobacter sp.
           RED65]
 gi|94428464|gb|EAT13437.1| heavy metal efflux pump, CzcA family protein [Oceanobacter sp.
           RED65]
          Length = 1027

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 77/663 (11%), Positives = 178/663 (26%), Gaps = 39/663 (5%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVNGF 69
            +   I +LI          +D +P   P               + +E D    + V  +
Sbjct: 15  IIFIAIAVLIGGSYIYRILPVDAYPDISPSL-----------VQVFVETDGLAPEEVEKY 63

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +   + L              + I + F D          V   LQ   S +   
Sbjct: 64  ITYPIESSMNGLPNLDHVRSISNFGLSVINIYFEDGTDIYFARQLVGERLQTAKSDIPSG 123

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
             + ++   T     I+              +            +   +   + L     
Sbjct: 124 FGEPVMGPITTGLGQILFYILEDTSGRYSLEQLREVQDWIVKYNLQTVKGVTEILSIGGQ 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     DP+ L Q   T  ++       N +                +  L     ++
Sbjct: 184 VKQFQVNIDPNALLQYDITLPQVKSIIENNNGNTGAQFLVKNDEEYIVRSVGLATGLDDL 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +          +   +  +   ++G      +T  N                    
Sbjct: 244 KNIVVKTING-----SPVYLESLGEIKIGGEIRRGLTIANGKGE--------------AV 284

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +       + +  I         +                      + +       + 
Sbjct: 285 VGMVLKLMGSNTSEVINATKARLKEINNNLPEGMQVTPYYDQASLVSAAINTVINALLMG 344

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV+ +L++ +   +  ++   SI  +V  T   +  LG +  L S+ G+ + IG+ VD
Sbjct: 345 IVLVIGILWLFMGRIRPSVIVALSIPFSVCFTFIAMYYLGISANLMSLGGLAIAIGMMVD 404

Query: 430 SNILVNERIRE---ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGG 483
             +++ E I +    ++    +   +          I  +    +I  + LF      G 
Sbjct: 405 GAVVITEHIDQELKNSQHGLPIQTLIARACKAMARPIAFAISIIIIVFIPLFTLQGVEGT 464

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL-IPDCIAIQF 542
             R  A T+ +++L S+  A+ +  A+    ++      + ++    F +       IQ 
Sbjct: 465 TFRPLAYTVSIAMLGSLLYALLLAPAIAQLFMKPSNTDKLSLSDRLMFGIDKIYAPLIQR 524

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                       L  + +   +     +  +       L + A     +S+ ++      
Sbjct: 525 FVHHRKLTACFALALLAAGIAITPRLGSEFVPRLNEGDLLIRATMAPSISLEKAKSTMNV 584

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                   F   +  + R+      + A       +   +       T  N E +    S
Sbjct: 585 FEQDLLAQFPEVEKVVTRIGRGEVGAHADPVNSAEIFVALKPKSEWQTADNLEDLYSAFS 644

Query: 663 REL 665
              
Sbjct: 645 HAF 647



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 57/153 (37%), Gaps = 1/153 (0%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           GE    + L+    ++       +   K+I   +P             +    I   I  
Sbjct: 281 GEAVVGMVLKLMGSNTSEVINATKARLKEINNNLPEGMQVTPYYDQASLVSAAINTVINA 340

Query: 673 VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           +++  + ++  +W+   +   ++    ++   +  T       GI  NL ++  +   IG
Sbjct: 341 LLMGIVLVIGILWLFMGRIRPSVIVALSIPFSVCFTFIAMYYLGISANLMSLGGLAIAIG 400

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
             V+  VV+ + + + +K     +  + LI ++
Sbjct: 401 MMVDGAVVITEHIDQELKNSQHGLPIQTLIARA 433



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 85/235 (36%), Gaps = 9/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L  ++      Q         + +Q         + V E  ++    I          
Sbjct: 794  AQLAKIEEVIGPRQITRENSQRFITIQANVRGRDMGSFVEEANQRIQESITLPPGYFVNW 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL-- 713
                ++ ++  ++ ++ + I+ + +LI ++  F   F+   +  L + +    G  AL  
Sbjct: 854  GGQFELQQKANQRLMIVIPITLLLVLILLYANFN-SFSNAMLIMLNIPLALVGGIIALWV 912

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   ++ A    + L G ++ + +V+   +     L  T+ +      ++  + L   +
Sbjct: 913  SGQSLSVPASVGFIALFGIALENGLVLVSHLN---HLIKTNHTINHASIQAARDRLRPVL 969

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             T++   + +LP+      G  V    A  +  G++ +   ++FI      +   
Sbjct: 970  MTALTTSLGLLPLLFATGTGSEVQKPLATVVVGGLISSTLVTLFILPAAYRWFVK 1024


>gi|254369809|ref|ZP_04985819.1| hypothetical protein FTAG_01147 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122768|gb|EDO66897.1| hypothetical protein FTAG_01147 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 1037

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 150/524 (28%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G+         +  + ++P                         
Sbjct: 9   RRPVLSLSISFMIIVVGVGS-----FFKLQVRQYPYIDSATIT---------VTTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +  F+    +      K             + IT+         ++  +V   +  
Sbjct: 55  NPATIQAFVTRPLEAAVGSSKGIDYMTSESALGTSTITVYVKLGYNTNDVLSEVVQNVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  D     +          ++          +  E S  I  +   ++       
Sbjct: 115 ILNQLPQDAYSPAIKLNPADNFPSLILAFTSK--TMNTSEISAYINSELTPKLLAEGGLS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    + +R+ +   T  +++      +    G      +L  +     
Sbjct: 173 EINVWGNMPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYT----- 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  T +   ++   +   +         +           
Sbjct: 228 ---------------LNPETSMSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A      + +    +         ++A         V   +      S   
Sbjct: 273 YFDGKNAVLAGAVVSPEENPLDVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V IV+F+ +   +  +V   +I L++I +  L+S++G ++ L ++  ++
Sbjct: 333 VLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +    F +   G     + +    +T ++    +   G
Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G     FA ++  ++LIS   A ++   M   ++  + M S
Sbjct: 453 GFTGQLFTEFAYSLAGAVLISGIVAYTLSPMMCSKVLNREMMSS 496



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/331 (12%), Positives = 104/331 (31%), Gaps = 14/331 (4%)

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
           +           I  N             +         V          +        +
Sbjct: 174 INVWGNMPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYTLNPETS 233

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
                +    +   ++  +      + +E       S   FDG+   L      P ++  
Sbjct: 234 MSTAQEYRNLIIKKSDNQIVRLSDVARVELGAQNYNSSVYFDGKNAVLAGAVVSPEENPL 293

Query: 631 QT-----RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
                  + L  +K  +   + +    N+ +       E++   +  VII +I M +++ 
Sbjct: 294 DVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDEVLHTLLEAVIIVSIVMFLFLG 353

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                   +  I  + L I  +    ++ G   NL  + A++  IG  V+D +VV + + 
Sbjct: 354 ---SLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMILAIGLVVDDAIVVLENI- 409

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMA 802
              +     +       K   E     +  ++   +   P+ + G   G +   FA  +A
Sbjct: 410 --YRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMGGFTGQLFTEFAYSLA 467

Query: 803 FGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             ++++   +  ++  +   + +    ++++
Sbjct: 468 GAVLISGIVAYTLSPMMCSKVLNREMMSSKL 498



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 93/295 (31%), Gaps = 14/295 (4%)

Query: 550  VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
                      S  ++     N  +  +    + + ++    L      L +L       Q
Sbjct: 732  YINYFFLKGYSFQVIPQLARNEMLTQEQLSNIYIRSDEMNKLFDSEVPLSALVTFKTEGQ 791

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                     +                + ++   + +  +     +        + +    
Sbjct: 792  PLTLNTFQQLNASTISAVMAPGITQGQAIEYVQSVVKSMLPEGFSYNFSGSARQYIENGN 851

Query: 670  IVGVIISAIAMLIYIWIR-----FKWYFALGAITTLILD-ITKTLGFFALFGIE---FNL 720
             + V  +   +LI++ +      F+    +     + +      L      G      N+
Sbjct: 852  TMMVAFAFAIVLIFLALSAQFESFRDSLVILVTIPMAISGALIPLYVGQYLGASWASLNI 911

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                 ++TLIG      ++V +    N       ++  D I  S ++ L   + T  A  
Sbjct: 912  YTQLGLVTLIGLISKQGIMVVE--FANHLQKHNGMNKYDAIVTSSSQRLRPILMTVSAMV 969

Query: 781  ISVLPMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            + V+P+    G   I      + ++ G+V+ A  S+F+   + ++I   ++K+ +
Sbjct: 970  VGVIPLVTSSGAGAISRNCIGVVISSGLVIGAIFSLFVLPVVYMYIASDKSKSVK 1024


>gi|317128000|ref|YP_004094282.1| acriflavin resistance protein [Bacillus cellulosilyticus DSM 2522]
 gi|315472948|gb|ADU29551.1| acriflavin resistance protein [Bacillus cellulosilyticus DSM 2522]
          Length = 1043

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/515 (12%), Positives = 150/515 (29%), Gaps = 40/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++I   ++  +G +      +        P                      +   
Sbjct: 10  RPVGVIIAALVMIILGSVSLSGLKVDLMPELDLPIVAVSTP--------------YQGAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    + + S  +          Q Q+ I L F  +   +++   +   +  V
Sbjct: 56  PQEVENLVTRPLEGVLSSTEGVSTIQSISTQNQSLILLMFDFNTDLDSVMLDLRDRIDMV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           N  L         +     ++ I+    + D    +    +       I QI        
Sbjct: 116 NQSLPDGASSPTPMRFDPNQMPIMQIGISAD---MNLTRLTSIAEDSIIPQIERIPGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +     ++  E D + L++   T +++S                        G    
Sbjct: 173 VNLTGGQEREIIVEPDLALLQRYGLTISQLSQII--------------------GGENIS 212

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G          + +T   + +I+                +            
Sbjct: 213 APAGEIERGGQEMALRIVGEFRTVDELENINVPLRTGEIIKLSDVAEVRDTFKENTSYAY 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +          + ++  +              L+              +      S    
Sbjct: 273 VNGEPTLSMDITKQSDANTVEVANAVTRELERLQQNITQGVSLTPIMDSSVFITDSIDSV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   + L+VL + +   +  L+   SI + VI    LL   G T+ + ++ G+ L
Sbjct: 333 AVNMLLGGSMALLVLLLFLRSFRSTLIIGLSIPIAVISAFTLLYFAGETINIITLGGLAL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
           GIGL VD++I++ E I +   +  S   +   G     S +  S +T+++  V + F   
Sbjct: 393 GIGLLVDNSIVILENIYKFRERGYSKKDAAINGAKEVASAVIASTMTSMVVFVPIVFTDG 452

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                    A+T+G ++L S+  +++IV  +   +
Sbjct: 453 IASELFIPLALTVGFTLLASLVVSLTIVPMLSGLL 487



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/219 (11%), Positives = 79/219 (36%), Gaps = 7/219 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            +                   V+  +++++   +             ++  +     ++ +
Sbjct: 806  QNQSRGVSITGDIMDRDLGSVIADIEEELNNYIFPEGYDYNIGGEFEMMMDAFTDLVLAL 865

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++   +   +  +F+   +    + +L       +  F + G   +  A   V+ L G 
Sbjct: 866  LLAIFLVYAVMAFQFEKVLYPFIVMFSLPATFIGIMIGFLITGRPLSAPAFIGVIMLSGI 925

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
             VN+ +V+ D +    KL     S  + I ++    L   + T +   ++++P+A+    
Sbjct: 926  VVNNAIVLVDYIN---KLRERDYSREEAIIEAGKTRLRPILMTMLTTVLAMVPLAIGIGE 982

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            G  +    A  + FG+  A   ++ +   + ++   +  
Sbjct: 983  GAELQAPMATVIVFGLSFATLITLLLIPVMYIYTDKFTE 1021



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/249 (11%), Positives = 84/249 (33%), Gaps = 5/249 (2%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK-NFLVRLQYQPGDSVAQTRVLE 636
            I + +     + LS V    ++ +              +  +  Q           V  
Sbjct: 241 NINVPLRTGEIIKLSDVAEVRDTFKENTSYAYVNGEPTLSMDITKQSDANTVEVANAVTR 300

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            +++    I    ++         I+  +    +  ++  ++A+L+ +     +   L  
Sbjct: 301 ELERLQQNITQGVSLTPIMDSSVFITDSIDSVAVNMLLGGSMALLVLLLFLRSFRSTLII 360

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             ++ + +          G   N+  +  +   IG  V++ +V+ + +    K      S
Sbjct: 361 GLSIPIAVISAFTLLYFAGETINIITLGGLALGIGLLVDNSIVILENI---YKFRERGYS 417

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
            +D       E     + ++M + +  +P+ V+   +     IP+A  +     +S+ ++
Sbjct: 418 KKDAAINGAKEVASAVIASTMTSMVVFVPI-VFTDGIASELFIPLALTVGFTLLASLVVS 476

Query: 817 APILLFIYD 825
             I+  +  
Sbjct: 477 LTIVPMLSG 485


>gi|255011149|ref|ZP_05283275.1| putative metal resistance related trasport membrane protein
           [Bacteroides fragilis 3_1_12]
 gi|313148959|ref|ZP_07811152.1| cation efflux system protein [Bacteroides fragilis 3_1_12]
 gi|313137726|gb|EFR55086.1| cation efflux system protein [Bacteroides fragilis 3_1_12]
          Length = 1028

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/617 (11%), Positives = 173/617 (28%), Gaps = 34/617 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLAIV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  +  K  L   +     +++     D      ++           ++  +    Q
Sbjct: 118 GEELPSNVGKPTLGPQSSILGEVLIIGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  L +   + DP R+R    +  ++       N +  G +               
Sbjct: 176 VAVLGGELKEYQIQLDPERMRHYGVSMNEVMTVTRGMNLNANGGVLYEYGNEYIVRGVLS 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                ++    +    +          V                   IG     +     
Sbjct: 236 TAKVDQLGKAVVKSINSVPVLLEDIADV------------------RIGPKAPKLGTASE 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +   +    +  +   T +    L  + +     +K++    R       S S  
Sbjct: 278 RGKPAVLMTVTKQPSTSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSISNV 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K +       V+IVLF+ +   +  +++  ++ L++++++  L  +G T+   S+ G+ +
Sbjct: 338 KKSLFEGGIFVVIVLFLFLANVRTTVISLVTLPLSLLVSILTLHFMGLTINTMSLGGMAI 397

Query: 423 GIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +  R+N+        SV   +          I +S +  +++ 
Sbjct: 398 AIGSLVDDAIVDVENVYKRLRENRLLPESERLSVIQVVFNASKEVRMPILNSTLIIVVSF 457

Query: 475 VVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LFF  G   R      I   +++  S   A+++   +  +++   K   +    L   
Sbjct: 458 VPLFFLSGMEGRMLVPLGIAFIVALFASTIVALTLTPVLCSYLLGKDKGNKLPKEALVAR 517

Query: 532 FLIPDCIA---IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           ++               R        LF I                 +G   + + +   
Sbjct: 518 WMKGGYEKALTWVLSHKRITLGSTIGLFIIALGFFFTLGRSFLPPFNEGSFTINISSLPG 577

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L          +   +S            R +            +E   +        
Sbjct: 578 ISLEESDKMGHRAEELLLSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSRTE 637

Query: 649 STIQNTEIVGPKISREL 665
                 E +G      +
Sbjct: 638 LMADVREKLGTITGANI 654



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +  + ++ K    ++   + I             + +    G I   I +
Sbjct: 293 TSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSISNVKKSLFEGGIFVVIVL 352

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++         + ++ TL L +  ++      G+  N  ++  +   IG  V+D +V 
Sbjct: 353 FLFLA---NVRTTVISLVTLPLSLLVSILTLHFMGLTINTMSLGGMAIAIGSLVDDAIVD 409

Query: 740 ---VYDRMRKNMKLYTT-SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
              VY R+R+N  L  +  +S   ++  +  E     + +++   +S +P+    G    
Sbjct: 410 VENVYKRLRENRLLPESERLSVIQVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGR 469

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           ++    I     +  +   ++    P+L      + K  ++
Sbjct: 470 MLVPLGIAFIVALFASTIVAL-TLTPVLCSYLLGKDKGNKL 509



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 94/256 (36%), Gaps = 15/256 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + V LS +   + ++    I+ +N   +      +  +   SV      ++ +
Sbjct: 781  MVDTQDGKKVPLSYIADVVSAMGPNTINRENVKRKIVISANVADRDLRSVVNDIQKQVDE 840

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAIT 698
            +                     SR L     + +++      I++ +  ++      A+ 
Sbjct: 841  QIKLPEGYHIEYGGQFESEQAASRTLALTSFMSIVV------IFLLLYHEFRSVKESAVI 894

Query: 699  TLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             + L +    G FAL     E ++ A+   ++L G +  + +++      N       + 
Sbjct: 895  LINLPLALIGGVFALLITTGEISIPAIIGFISLFGIATRNGMLLISHY--NHLQQVEGLG 952

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSS 812
              D + +   + L   V T++++ ++++P+A+ G      +    A  +  G++ +   +
Sbjct: 953  VYDSVIRGSLDRLNPIVMTALSSALALIPLALSGSLPGNEIQSPMAKVILGGLLTSTFLN 1012

Query: 813  IFIAAPILLFIYDWRA 828
             FI   + L +   R 
Sbjct: 1013 GFIIPIVYLMMNGKRK 1028


>gi|261854905|ref|YP_003262188.1| heavy metal efflux pump, CzcA family [Halothiobacillus neapolitanus
           c2]
 gi|261835374|gb|ACX95141.1| heavy metal efflux pump, CzcA family [Halothiobacillus neapolitanus
           c2]
          Length = 1090

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 67/580 (11%), Positives = 154/580 (26%), Gaps = 42/580 (7%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
           + LD  P       I                     V   +          +        
Sbjct: 34  TPLDAIPDLSDTQVI---------IKTTYPGQSPQVVQDQVTYPLTTALLAVPGSTAVRG 84

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
                 + I ++F D         +V  +L    S L    +  L    T          
Sbjct: 85  YSFYGDSYIYVTFKDGTNLYWARSRVLEYLNQARSSLPAGVEPQLGPDATGVGWVYEY-A 143

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
                   +  + +         Q+       +      ++ +     DP RLR    + 
Sbjct: 144 LTDPSGQMNLSQLTTLQNWFLKFQLQTVSGVSEVATVGGMVREYQIVVDPDRLRAFGVSL 203

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           A +       N    G +  +        ++  ++   +I                    
Sbjct: 204 ATLRKAVADANKEVGGGVLELGGAEYMVTSRGYLKSVADIE------------------R 245

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
           + +   + G              P        +     +   I   ++  +    I+   
Sbjct: 246 IPVGVTQSGTPILVRDLGTVRLGPAPRRGVADLDGKGEVVGGIIVMRSGENARQVIDAVK 305

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                L+         +      G    +             +V +V  + + + +  LV
Sbjct: 306 TKIEHLKPSLPKGVEIVPVYDRSGVINRAVDTLSSKLVEEFLVVALVCAIFLWHLRSALV 365

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN------- 442
           A   + L V++   ++   G    + S+ GI + IG  VD+ I++ E             
Sbjct: 366 AIIGLPLGVLMAFIVMHAQGINANIMSLGGIAIAIGAMVDAAIVMIENAHRHLVAWRETH 425

Query: 443 ---RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSI 496
               K    +  +          +F S +   ++ + +F      G      A T   ++
Sbjct: 426 GSPPKGDDHWRLIAQSAGEVGPALFFSLLIITLSFIPVFTLQAQEGRMFAPLAFTKTYAM 485

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
             +   AI+++  +M + IR +  +            +   +    +R     + IS++F
Sbjct: 486 AAAAGLAITLIPVLMGYFIRGRIPREEANPLNRFLIALYRPVLHTVLRFPKTLMAISLIF 545

Query: 557 SICSICLL-FTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
            + ++  L    G    + + G     +  +   +    R
Sbjct: 546 VLSAVLPLAGVGGYLAPLKWVGSSAWQLHVSDWQNDWAKR 585



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/258 (15%), Positives = 77/258 (29%), Gaps = 16/258 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       V L  + +   +     I  ++        V  Q     S        +  
Sbjct: 833  PIVTPTGATVALGQIATVQVTDGPPMIRSEDSRPAGFVFVTTQGVDLGSYVNNARRIVDA 892

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            K         +         + +  L +  +V + ++ I +L+++  R     +L  + T
Sbjct: 893  KVKLPPGYAISWTGQYQYLQRATERLKQ--VVPLTLAIIFVLLFLIFRHGGKASLI-MVT 949

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY--------DRMRKNMKLY 751
            L   +          G E ++      + L G +    VV+         DR R      
Sbjct: 950  LPFALVGGFWLLWALGFELSIAVAVGFIALAGVAAEFGVVMLIYLDHAIEDRRR--AGRL 1007

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
             T    RD I +     +     T       ++P+ V    G  V+   A PM  G++ A
Sbjct: 1008 NTRTDLRDAIMEGAVLRVRPKAMTVAVILAGLIPILVGHGTGSEVMSRIAAPMIGGMITA 1067

Query: 809  ASSSIFIAAPILLFIYDW 826
               S+ +   +       
Sbjct: 1068 PLLSMLLLPAVYWLWQRR 1085



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/177 (18%), Positives = 63/177 (35%), Gaps = 10/177 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    +E +K  + + V +  + +   V  +    L  K +   ++ A+   I++W   
Sbjct: 302 DAVKTKIEHLKPSLPKGVEIVPVYDRSGVINRAVDTLSSKLVEEFLVVALVCAIFLW--- 358

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---- 744
               AL AI  L L +          GI  N+ ++  +   IG  V+  +V+ +      
Sbjct: 359 HLRSALVAIIGLPLGVLMAFIVMHAQGINANIMSLGGIAIAIGAMVDAAIVMIENAHRHL 418

Query: 745 ---RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
              R+             LI +S  E      ++ +   +S +P+          FA
Sbjct: 419 VAWRETHGSPPKGDDHWRLIAQSAGEVGPALFFSLLIITLSFIPVFTLQAQEGRMFA 475


>gi|319760956|ref|YP_004124893.1| heavy metal efflux pump, czca family [Alicycliphilus denitrificans
           BC]
 gi|317115517|gb|ADU98005.1| heavy metal efflux pump, CzcA family [Alicycliphilus denitrificans
           BC]
          Length = 1062

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 55/596 (9%), Positives = 153/596 (25%), Gaps = 62/596 (10%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  IG+         +  +D  P                 +++ ++++          
Sbjct: 16  VLLAAIGMAAVGVFSYQKLPIDAVPDI---------------TNVQVQINTQAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
               +    + + + L          R   +++T+ F D          V   +Q    K
Sbjct: 61  TEQRVTYPIETVMAGLPNLEQTRSLSRYGLSQVTVIFKDGTDIYFARQLVNERIQEARDK 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRIDQIGISES 179
           L V     L   +T      + +          D +   A +           Q+     
Sbjct: 121 LPVGITPALGPISTGLGEIYLWTVEAKDGAKKPDGMPYTATDLREIQDWIIKPQLRNVPG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         +      P+RL  L  T   +       N +        R  +     
Sbjct: 181 VTEINSIGGYAKEYQIAPIPARLASLGVTLQDIVTALDRNNGNVGAGYIEKRGEQYLIRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+   +I                     ++     G          ++G    +   
Sbjct: 241 PGQVKTLEDIG--------------------NVILSSAGGVPIRVRDVADVGLGRELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +        +          +           + 
Sbjct: 281 AATDNGREVVLGTVFMLIGQNSRTVSQAVDKKMVEINRSLPEGVHAVTVYDRTVLVDKAI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+++LF+ +   +  ++    I L+++ T   +     +  L S+  
Sbjct: 341 ATVKKNLLEGAILVIVILFLFLGNIRAAIITATVIPLSMLFTFTGMVHYKVSANLMSLGA 400

Query: 420 IVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIFDSNIT 469
           +  GI   +D  +++ E                      F  + +    +   +    + 
Sbjct: 401 LDFGII--IDGAVVIVENCVRRLAHAQAHYGRPLTRTERFHEVFLASKESRRALLFGQLI 458

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++  + +F      G      A T+  +++ +M  +++ + A +   I ++  ++ +  
Sbjct: 459 IMVVYLPIFALTGVEGKMFHPMAFTVVAALVGAMILSVTFIPAAVALFIGHRVSETENFL 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +         +              ++   +C +              +G   + 
Sbjct: 519 VVQAKRWYGPLLDRVMAAKAVVLAAAAVAVVLCGLIATRMGSEFVPSLNEGDFAIQ 574



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/128 (21%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+   I  +++A    + L G +V + +V+   +R    L        + I
Sbjct: 920  FALTGGILALWLRDIPLSISAAVGFIALSGVAVLNGLVMISYIR---SLREDGTPLDEAI 976

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +  P
Sbjct: 977  REGALTRLRPVLMTALVASLGFIPMAIATGTGAEVQRPLATVVIGGILSSTVLTLLVL-P 1035

Query: 819  ILLFIYDW 826
            IL  +   
Sbjct: 1036 ILYRLAHR 1043



 Score = 38.9 bits (88), Expect = 3.2,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 13/165 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + ++I          A+   T + L +  T      + +  NL ++ A+    G 
Sbjct: 348 LEGAILVIVILFLFLGNIRAAIITATVIPLSMLFTFTGMVHYKVSANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYD----RMRKNMKLYTTSISFRDL---IDKSINETLGRSVYTSMAAFISVLP 785
            ++  VV+ +    R+      Y   ++  +    +  +  E+    ++  +   +  LP
Sbjct: 406 IIDGAVVIVENCVRRLAHAQAHYGRPLTRTERFHEVFLASKESRRALLFGQLIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW 826
           +    G    +    A  +   +V A   S+ FI A + LFI   
Sbjct: 466 IFALTGVEGKMFHPMAFTVVAALVGAMILSVTFIPAAVALFIGHR 510


>gi|300777533|ref|ZP_07087391.1| CzcA family heavy metal efflux pump [Chryseobacterium gleum ATCC
           35910]
 gi|300503043|gb|EFK34183.1| CzcA family heavy metal efflux pump [Chryseobacterium gleum ATCC
           35910]
          Length = 1044

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 74/678 (10%), Positives = 192/678 (28%), Gaps = 52/678 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD--EDDFVN 67
           L   +  +GL+      + +  +D  P                   ++          + 
Sbjct: 14  LIIALLVLGLIGVGAYQVTRLPIDAVPDITNNQ-----------VQVITTAPSFGATDIE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    ++  + +          R   + +T+ F D         +V   LQ + + + 
Sbjct: 63  RLITFPIEQANNNISGLKEIRSFSRFGLSLVTIVFEDDVDIYWARQQVAERLQQIQAVIP 122

Query: 128 VDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                     + T   +    V+      +   +  E           Q+   +   +  
Sbjct: 123 QGIGNPQLGPISTGLGEIFQYVVRPEKGYEKKYNITELRTIQDWIVRRQLLGVKGVAEVS 182

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                L Q     +P RL     T   +       N +  G             ++ LV 
Sbjct: 183 SFGGKLKQYEIAVNPDRLNAYGITINDVFDALQANNQNTGGAYIEKGPTVLYIRSEGLVG 242

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
              EI+                   + I+        F     +                
Sbjct: 243 SIEEINN------------------ISIATKTNAVPLFIRDIAEVKTGFATRYGAMTFND 284

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
              ++ A+       + N  I+      A ++       +             +    + 
Sbjct: 285 QGEVSGAVVMMLKGENSNQVIKNVKEKIAQVQKTLPKGVVIEPFLDRTKMVNHAIGTVEK 344

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
                A +V+ VL + +   + GL+    I L ++  + +++L G +  L S+    L  
Sbjct: 345 NLTEGALIVVFVLVLFLGNIRAGLLVASVIPLAMLFAICMMNLFGVSGNLMSLGA--LDF 402

Query: 425 GLAVDSNILVNERIREENRKNQSVFC------------SLDMGFSRAYSTIFDSNITALI 472
           GL +D  +++ E +  +   N                  ++       S +F   I  ++
Sbjct: 403 GLIIDGAVIIVESVLHQFSHNSKFKKIFSVGKSEMDTIVIESAGKMMNSAVFGQIIILIV 462

Query: 473 ATVVLFFFG--GGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLS 529
              +L   G  G   +  A T+  ++L +   +++ +  M    + +     ++    + 
Sbjct: 463 YLPILTLQGIEGKMFKPMAQTVAFALLGAFLLSLTYIPMMSAVLLRKRSDKPTLSDRMMK 522

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           +   I   + ++ +R      G+  +  I ++ +L   G  +    +      V      
Sbjct: 523 KVEKIYLIVLLKLIRVPKIVFGVVAVLFITAVFILSRMGGEFIPSLE-EGDFAVDTRVLP 581

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S+  +   + +   I    F   +  + ++      +         +   + +    +
Sbjct: 582 GSSLTTTIESTQKAAHILKSRFPEVEKVVTKIGSGEVPTDPMPMDASDMMVILKDKKEWT 641

Query: 650 TIQNTEIVGPKISRELIR 667
           +      +  K+ ++L  
Sbjct: 642 SASTFPELADKMGKQLQE 659



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 44/244 (18%), Positives = 98/244 (40%), Gaps = 10/244 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L  +++ +   Q         + + +   D   Q+ V E+ +K   ++   +    T 
Sbjct: 804  SQLAKVEVKNGPNQIQRENAQRRIVVGFNIKDRDVQSIVEELQQKVDQKMKLPTGYYMTY 863

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +      ++ ++ V I+   + + +++ F     +L   T + L I   +   AL 
Sbjct: 864  GGSFENLNNAKQRLMIAVPIALALIFVMLFLAFNSVKESLLIYTAIPLSIIGGVFLMALR 923

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRSV 773
            G+ F+++A    + L G +V + +V+     +  +L+     +   +I       L   +
Sbjct: 924  GMPFSISAGVGFIALFGVAVLNGIVLIS---EFNRLHKRGIKNIVRIIIDGGESRLRPVL 980

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD--WRA 828
             T+  A +  +PMAV    G  V    A  +  G++VA   ++F+   + + I       
Sbjct: 981  MTAFVASLGFIPMAVSNGAGAEVQRPLATVVIGGLMVATFLTLFVLPLLYVTIEKGFKNE 1040

Query: 829  KNAR 832
            KN +
Sbjct: 1041 KNKK 1044



 Score = 43.1 bits (99), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 60/168 (35%), Gaps = 14/168 (8%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + I + + +         L   + + L +   +    LFG+  NL ++ A+    G  +
Sbjct: 349 GALIVVFVLVLFLGNIRAGLLVASVIPLAMLFAICMMNLFGVSGNLMSLGAL--DFGLII 406

Query: 735 NDKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  V++ + +       +               ++ +S  + +  +V+  +   I  LP+
Sbjct: 407 DGAVIIVESVLHQFSHNSKFKKIFSVGKSEMDTIVIESAGKMMNSAVFGQIIILIVYLPI 466

Query: 787 AVWG---GSVIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDWRAKN 830
                  G +    A  +AF ++ A   S+ +I     + +     K 
Sbjct: 467 LTLQGIEGKMFKPMAQTVAFALLGAFLLSLTYIPMMSAVLLRKRSDKP 514


>gi|126172354|ref|YP_001048503.1| CzcA family heavy metal efflux protein [Shewanella baltica OS155]
 gi|125995559|gb|ABN59634.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS155]
          Length = 1017

 Score =  124 bits (310), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 66/591 (11%), Positives = 169/591 (28%), Gaps = 42/591 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD--EDDFVN 67
           L+ +I  + +++A         LD FP   P               ++L+      + + 
Sbjct: 14  LFVLIVALIIMLAGARAWFSIPLDAFPDISPTQ-----------VKIILKAPGMTPEEIE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             + +  +     +  + I   + +   + ITL F +         +V+  +  V     
Sbjct: 63  AQITVPIETELLGIPHQSILRSTTKYAISDITLDFDEGTDIYWARQQVSERIAAVWDSFP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 +   +T      + S   ++      +E+   +  +    +             
Sbjct: 123 EGVTGGVAPMSTPLSEIFMFS---LENPNLSLMERRQLLEWEIRPLLRTVAGVADVNILG 179

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                      P+ +     + A +    V  N+++      +                 
Sbjct: 180 GYAKSFSVTPKPAAMAAAGVSFAALQQAIVENNHNEGAGKLTI----------------- 222

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
              G       A         +  +      AR +      +I                 
Sbjct: 223 ---GTDTIIVRAEGRIDDIDELKQLVIKADDARVYRLQDLADIQIGHLARYGAVTKDGNE 279

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             +A+       +    ++        +                      +         
Sbjct: 280 TAEALIIALKDANTAQVVKNIKEKLDQISLTLPEGSQINTFYDRANLINTAIDTISNALF 339

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               LV+I+L + +   +  LV   S+ L+ ++T  ++     +  L S+ G+V+ IG+ 
Sbjct: 340 EAVVLVIILLALFLGNVRAALVVSLSLPLSALMTFLMMDYFNLSANLMSLGGLVIAIGML 399

Query: 428 VDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           VDS+++V E +      ++       +          +    +  +I    L       G
Sbjct: 400 VDSSVVVVENMVNLIATKQRLPRLHLIFRATKDVAIPVVSGTVIVMIVFSPLLTLSGLEG 459

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A+T+  ++L ++  +++++  +  +++  K  K        +   +        
Sbjct: 460 KLFTPVAVTIVFAMLSALVLSLTVIPVIASYLVNEKAAKEPKAIEKLKQLYLGSLKGTFS 519

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            + RF  +  S+L     +  L           +G I L +  +  + L  
Sbjct: 520 HQKRFIVIAFSLLIVSLGLFGL-VGKTFMPTLDEGDIILQLEKSPSISLEA 569



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 82/231 (35%), Gaps = 3/231 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +            +      E    + +  +  ++    + ++    +I+  +P  +
Sbjct: 256 LQDLADIQIGHLARYGAVTKDGNETAEALIIALKDANTAQVVKNIKEKLDQISLTLPEGS 315

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             NT      +    I      +  + + ++I + +       AL    +L L    T  
Sbjct: 316 QINTFYDRANLINTAIDTISNALFEAVVLVIILLALFLGNVRAALVVSLSLPLSALMTFL 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               F +  NL ++  ++  IG  V+  VVV + M  N+      +    LI ++  +  
Sbjct: 376 MMDYFNLSANLMSLGGLVIAIGMLVDSSVVVVENMV-NLIATKQRLPRLHLIFRATKDVA 434

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              V  ++   I   P+    G     F  P+A  IV A  S++ ++  ++
Sbjct: 435 IPVVSGTVIVMIVFSPLLTLSGLEGKLF-TPVAVTIVFAMLSALVLSLTVI 484



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 86/239 (35%), Gaps = 12/239 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ +L            + N    +          + V E+  K   EI   S    + 
Sbjct: 785  SDVATLSYKQGPILIEREQGNRFSVITTNVQGRDIVSFVEELNAKIAQEIKLPSGYSVSF 844

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +  +      ++ + I+   + + ++  F      G I   +       G  +L+ 
Sbjct: 845  GGEFENQQRATSNLLLVIPIAIALITLILFTTFGSLAKAGLILANV-PFAMMGGIVSLYL 903

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   ++ A    + L+G +V + VV+     +  K   +  + R+ +++     L   +
Sbjct: 904  SGEYLSVPASVGFIALLGVAVLNGVVMVS-YYEQTKHMFS--NLRERVEQGAARRLRPIL 960

Query: 774  YTSMAA-FISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             T        ++P+      G  +    AI +  G++ +  +++++  PIL F  + R 
Sbjct: 961  MT-ATTAMFGLMPLVFASGPGAEIQKPLAIVVIGGLLTSTITTLYLL-PILYFWLEKRK 1017


>gi|329897151|ref|ZP_08271893.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [gamma proteobacterium IMCC3088]
 gi|328921386|gb|EGG28778.1| Cobalt-zinc-cadmium resistance protein CzcA; Cation efflux system
           protein CusA [gamma proteobacterium IMCC3088]
          Length = 1033

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 66/583 (11%), Positives = 155/583 (26%), Gaps = 36/583 (6%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           L ++ +D  P       I                     V   +      L   +     
Sbjct: 31  LQRTPVDAIPDLSDVQVI---------VKTPFPGQAPQVVEDQVTYPLSNLLLGIPGAKT 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                    + + + F DS        +++ +L   ++ L    +  +    T       
Sbjct: 82  VRAYSFMGDSYVYVIFDDSTDVYWARSRISEYLSQASTILPAGVQPQIGPDATGVGWIYQ 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                         + +         ++   E   +      ++ Q     DP  LR+L 
Sbjct: 142 Y-AITDSSNQHDLADLTRLQDWFIKQELQSVEGVAEVAKVGGMVKQYQIVVDPEALRRLQ 200

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
                +       N S    +               ++   +I                 
Sbjct: 201 IPITHIVTAVQRNNQSSGASVIEQAGAEHMVQVLGYIDSIDDIKNT-------------- 246

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +     G     +        PL+            +   I   ++      TI+
Sbjct: 247 ----PLGLSANGLPVLVKDIASVTLGPLSRRGVADFNGQGDVVGGIIVMRSGGDAQRTID 302

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                 A + +   P                + +           ++ +V  + + + + 
Sbjct: 303 AVKAKLATIESSLPPGVTITSVYDRSQLIERAVTDLSTKLLQEFIVIALVCAVFLFHLRS 362

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE----N 442
            LVA  S+ + ++L   L+   G +  + S+ GI + IG  VD++I++ E + +      
Sbjct: 363 SLVAIISLPVALLLAFMLMYAQGISANIMSLGGIAIAIGAMVDASIVMVENLHKHLAGQR 422

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF---FFGGGAVRGFAITMGLSILIS 499
            + ++ +  +    S     IF       ++   +F      G      A T   ++  S
Sbjct: 423 LERETRWQHVYAAVSEVAPAIFFGLAIITVSFFPVFALQAQEGRLFGPLAFTKSYAMAAS 482

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP-DCIAIQFMRARFWGVGISILFSI 558
            F AI++V  ++ +++  K          S         +       +      +++   
Sbjct: 483 AFLAITLVPVLIGYLMVGKIPSEAQNPVNSWLQRAYRPMLTAALQHPKTTLASAALILLS 542

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
               L            +G I      +  + +   R  L+  
Sbjct: 543 ALWPLSQLGSEFMPDLDEGDIMYMPTFDPGISIGEARLRLQQA 585



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 10/222 (4%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
            F         ++ ++           V   +    + + P  TI +       I R + 
Sbjct: 277 DFNGQGDVVGGIIVMRSGGDAQRTIDAVKAKLATIESSLPPGVTITSVYDRSQLIERAVT 336

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                 +    +  L+     F    +L AI +L + +          GI  N+ ++  +
Sbjct: 337 DLSTKLLQEFIVIALVCAVFLFHLRSSLVAIISLPVALLLAFMLMYAQGISANIMSLGGI 396

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFI 781
              IG  V+  +V+     +N+  +              +  +++E      +      +
Sbjct: 397 AIAIGAMVDASIVMV----ENLHKHLAGQRLERETRWQHVYAAVSEVAPAIFFGLAIITV 452

Query: 782 SVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           S  P+          F  P+AF    A ++S F+A  ++  +
Sbjct: 453 SFFPVFALQAQEGRLFG-PLAFTKSYAMAASAFLAITLVPVL 493



 Score = 44.3 bits (102), Expect = 0.089,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 81/236 (34%), Gaps = 9/236 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  +     +             +     D+   + V +       E+        + 
Sbjct: 792  QDVAEVMHERGAAMLKSENARLNAWVYIDVKDTDLGSYVTQAQALLDQELNLPPGYTLSW 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +  +  + +  + V I+   ++  + ++F      L  + TL L +  +       
Sbjct: 852  AGQYQYMQRALERLKIIVPITLAIIVALLLMQFKSMREVLLLLLTLPLSLVGSAWLLYGL 911

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR--- 771
            G   ++      + L G S+   +++     +     + S S    ++ +I E   R   
Sbjct: 912  GFNLSVAVGVGFIALAGLSIEIGILMLV-YLQQSVSASNSESDTKALNDAIIEGASRRVR 970

Query: 772  -SVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              + T+ + FI +LP+ +    G  V+   A PM  G+V     ++ +   +  ++
Sbjct: 971  PILMTASSVFIGMLPILLGEGTGVEVMSRIAAPMVGGVVSTLVLTLIVLPVLYRYL 1026


>gi|253570663|ref|ZP_04848071.1| cation efflux system protein [Bacteroides sp. 1_1_6]
 gi|251839612|gb|EES67695.1| cation efflux system protein [Bacteroides sp. 1_1_6]
          Length = 1042

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 77/679 (11%), Positives = 186/679 (27%), Gaps = 48/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   ++    ++   G   A+   +        P+ +     +       G       
Sbjct: 10  LHNRLVVLCAAILLLIAGTYTAMHTEVDVFPDLNAPTVVIMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L V+  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 VVSESLPVNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +   + DP R+R    +  ++       N +  G +             
Sbjct: 174 AQVAVLGGDIKEYQIQLDPERMRHYGVSMGEVMAVTQDMNLNANGGVLYEFGNEYIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  E+    +               V                   IG     +   
Sbjct: 234 LSTPKVEELGKAVVKTVNNFPVTLEDIADVK------------------IGPKAPKLGTA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P +   +    A  +   T +    L  + +     +K++    R       S  
Sbjct: 276 SERGKPAVLMTVTKQPATSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+
Sbjct: 336 NVKKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+    +        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVYKRLRENRLKAEAERLSTLEVVFNASKEVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDIN 526
           + V LFF  G   R      I   +++  S   A+++   +  ++    +  K       
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGSNKTNKELKESFL 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    +       R       +LF I                 +G   + + + 
Sbjct: 516 ARWMKGIYEKALTWVLAHKRVTLGSTIVLFLIALGVFFTLGRSFLPSFNEGSFTINISSL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   ++            R +            +E   +      
Sbjct: 576 PGISLEESNKMGHRAEELLLTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRPR 635

Query: 647 PLSTIQNTEIVGPKISREL 665
                +  E +G      +
Sbjct: 636 SELVAEVREKLGTITGANI 654



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 86/266 (32%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      D+ +     +     +                         +  + 
Sbjct: 248 KTVNNFPVTLEDIADVKIGPKAPKLGTASERGKPAVLMTVTKQPATSTLELTDKLEASLQ 307

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         L 
Sbjct: 308 DLQKNLPADVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTLI 364

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN-MKL 750
           ++ TL L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +K 
Sbjct: 365 SLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRLKA 424

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +S  +++  +  E     + +++   +S +P+    G    ++    I     +  
Sbjct: 425 EAERLSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGIAFIVALFA 484

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N  +
Sbjct: 485 STVVALTLTPVLCSYLLGSNKTNKEL 510



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 101/264 (38%), Gaps = 11/264 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++  + N  VD +  R    +     +S    +      V+ +     +VA  
Sbjct: 766  VKDDARDEMEKIRNLMVDTNDGRKVPLNYVAEVVSSMGPNTINRENVKRKIVISANVADR 825

Query: 633  RVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +  +V     ++     +        G +   E     ++ +      ++I++ +  ++
Sbjct: 826  DLRSVVNDIQKQVDATIQLPEGYHIEYGGQFESEQAASRVLALTSFMSIVIIFLLLYHEF 885

Query: 691  YFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +  L L +    G FAL     E ++ A+   ++L G +  + +++      N
Sbjct: 886  RSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHY--N 943

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAF 803
                   ++  D + +   + L   + T++++ ++++P+A+     G+ I S  A  +  
Sbjct: 944  HLQQVEGLNVYDSVIQGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQSPMAKVILG 1003

Query: 804  GIVVAASSSIFIAAPILLFIYDWR 827
            G++ +   + FI   + L ++  R
Sbjct: 1004 GLLTSTFLNGFIVPIVYLMMHRQR 1027


>gi|294010511|ref|YP_003543971.1| copper/silver efflux system membrane protein CusA/CzcA [Sphingobium
           japonicum UT26S]
 gi|307296776|ref|ZP_07576595.1| heavy metal efflux pump, CzcA family [Sphingobium chlorophenolicum
           L-1]
 gi|332188136|ref|ZP_08389866.1| heavy metal efflux pump, CzcA family protein [Sphingomonas sp. S17]
 gi|292673841|dbj|BAI95359.1| copper/silver efflux system membrane protein CusA/CzcA [Sphingobium
           japonicum UT26S]
 gi|306877905|gb|EFN09130.1| heavy metal efflux pump, CzcA family [Sphingobium chlorophenolicum
           L-1]
 gi|332011850|gb|EGI53925.1| heavy metal efflux pump, CzcA family protein [Sphingomonas sp. S17]
          Length = 1047

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/576 (11%), Positives = 148/576 (25%), Gaps = 48/576 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  ++V+    +   GL          + +D  P            D++          
Sbjct: 11  RNRFFVVLGMLALVGAGLWAV-----RSTPIDALPDLS---------DVQVVIRTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APQIVENQITYPLTTTMLSVPGAKTVRGYSFFGDSFVYVIFEDGTDLYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    +  L    T                     +           ++       
Sbjct: 117 VQGRLPASARSALGPDATGVGWVYEY-ALVDRTGRHDLSQLRGLQDWFLRYELKTVTGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     DP +L     T A+        N    G +  +           
Sbjct: 176 EVASIGGMVKQYQVLLDPVKLAAYGVTHAQAVQAISQANQEAGGSVLEMAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                     + +     G              P        
Sbjct: 236 YLKTLDDFRA------------------IPLKTAAGGVPVRLGDVATIQVGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +   TI       A LR    P    +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNARETIAAVKDKLADLRKSLPPGVEVVTVYDRSQLIDRAVEN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  ++ L V+    ++   G    + S+ GI 
Sbjct: 338 LTRKLVEEFIVVALVCALFLWHVRSALVAILTLPLGVLAAFVVMRFQGVNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIR-----------EENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + IG  VD+ +++ E              + +   +  +  +    +     +F S +  
Sbjct: 398 IAIGAMVDAAVVMIENAHKRIERWEQDHPDRHLDGEMRWIVVTEAAAEVGPALFFSLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   ++++V  +M ++IR +         
Sbjct: 458 TLSFIPVFTLEAQEGRLFAPLAFTKTYAMGAAAILSVTLVPILMGWLIRGRIPAEQANPV 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
                 I    AI +   R   V +       +   
Sbjct: 518 NRWLTNIYR-PAIDWTMKRPKAVLLIAALVFATTAW 552



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 78/254 (30%), Gaps = 13/254 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   A + + L  V +   +     +  +N        V ++ +   SV       + K
Sbjct: 787  PILTPAGQQITLGTVANVSIAEGPPMLKTENARPSTWVYVDVRGRDLASVVGDLQRAVAK 846

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +                   +    L     + V  + + + + +++ F   F   A+  
Sbjct: 847  QVRLSPGVSIAYSGQFEYLERAVDRLK----LVVPATLLIIFVLLYLIFG-RFDEAALIM 901

Query: 700  LILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK---NMKLYTTS 754
              L    T G     L G   ++      + L G S    VV+   ++        +  +
Sbjct: 902  GTLPFALTGGIWTLYLLGFNQSIATGVGFIALAGVSAEFGVVMLIYLKNALAERGAHPDA 961

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASS 811
                  + +     +     T       +LP+ +    G  V+   A PM  G++ A   
Sbjct: 962  AEVEAAVREGALLRVRPKAMTVAVILAGLLPILLGSGAGSEVMSRIAAPMIGGMLTAPLL 1021

Query: 812  SIFIAAPILLFIYD 825
            S+F+     L +  
Sbjct: 1022 SMFVLPAAYLLLRR 1035



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 83/229 (36%), Gaps = 14/229 (6%)

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G    L   +       A    L  ++K +   V + T+ +   +  +    L RK 
Sbjct: 283 EVAGGVVILRSGKNARETIAAVKDKLADLRKSLPPGVEVVTVYDRSQLIDRAVENLTRKL 342

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           +   I+ A+   +++W       AL AI TL L +          G+  N+ ++  +   
Sbjct: 343 VEEFIVVALVCALFLW---HVRSALVAILTLPLGVLAAFVVMRFQGVNANIMSLGGIAIA 399

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRD--------LIDKSINETLGRSVYTSMAAFI 781
           IG  V+  VV+ +   K ++ +      R         ++ ++  E      ++ +   +
Sbjct: 400 IGAMVDAAVVMIENAHKRIERWEQDHPDRHLDGEMRWIVVTEAAAEVGPALFFSLLIITL 459

Query: 782 SVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           S +P+          F   A    + +  AA  S+ +   ++ ++   R
Sbjct: 460 SFIPVFTLEAQEGRLFAPLAFTKTYAMGAAAILSVTLVPILMGWLIRGR 508


>gi|157146837|ref|YP_001454156.1| hypothetical protein CKO_02611 [Citrobacter koseri ATCC BAA-895]
 gi|157084042|gb|ABV13720.1| hypothetical protein CKO_02611 [Citrobacter koseri ATCC BAA-895]
          Length = 1048

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 71/684 (10%), Positives = 174/684 (25%), Gaps = 47/684 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVVMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------VKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       +    T                     E           ++    +  
Sbjct: 117 VQGKLPAGVSAEMGPDATGVGWIFEY-ALVDRSGKHDLAELRSLQDWFLKYELKTIPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP +L Q   + A++                          NQ 
Sbjct: 176 EVASVGGVVKEYQVVIDPMKLTQYGISLAQVKSAL-------------------DMSNQE 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                VE+S        + +          +          +      +     +     
Sbjct: 217 AGGSSVELSEAEYMVRASGYLQTLDDFNNIVLKSGENGVPVYLRDVARVQIGPEMRRGIA 276

Query: 302 VLTA-PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L     +   +   ++  +    I         L++        +           +  
Sbjct: 277 ELNGEGEVAGGVVILRSGKNARDVISAVKTKLETLKSSLPEGVDVVTTYDRSQLIDRAID 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI
Sbjct: 337 NLSYKLLEEFIVVALVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNIT 469
            + +G  VD+ I++ E   +               N++ +  +          +F S + 
Sbjct: 397 AIAVGAMVDAAIVMIENAHKRLEEWAHQHPGDPLDNETRWKVITNASVEVGPALFISLLI 456

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             ++ + +F      G      A T   ++  + F AI ++  +M + IR K        
Sbjct: 457 ITLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAAFLAIVVIPILMGYWIRGKIPAESSNP 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                  I   + ++ +      + +++L  +  I  L   G  +      G  L + + 
Sbjct: 517 LNRFLIRIYHPLLLKVLHWPKTTLLVAVLSILTVIWPLNKVGGEFLPQINEGDLLYMPST 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            P   +      + LQ  D              +       + +    +     ++    
Sbjct: 577 LPGISAA--QAADMLQKTDKLIMTVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQD 634

Query: 647 PLSTIQNTEIVGPKISRELIRKGI 670
                   + +  ++ + +   G+
Sbjct: 635 QWRPGMTMDKIIEELDKTVRLPGL 658



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 95/288 (32%), Gaps = 14/288 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +        +    + +     + + L+ V     +     +  +N     
Sbjct: 763  IARYPINLRYPQRYRDSPETLRQLPILTPMQQQITLADVADVKIAPGPSMLKTENARPAS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + S +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVNDLKKAIAEKVQLKPGTSVAFSGQFELLERASHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  IT++   +   + F    G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RVGEALLIITSVPFALVGGIWFLYWMGFHLSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYT--------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++           T+    + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAEPSLDNPQTFTAEKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                 G  V+   A PM  G++ A   S+FI       ++    ++ R
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLRTHQHKR 1047


>gi|87309586|ref|ZP_01091720.1| Cation efflux system protein, AcrB/AcrD/AcrF family protein
           [Blastopirellula marina DSM 3645]
 gi|87287350|gb|EAQ79250.1| Cation efflux system protein, AcrB/AcrD/AcrF family protein
           [Blastopirellula marina DSM 3645]
          Length = 1063

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 65/595 (10%), Positives = 173/595 (29%), Gaps = 37/595 (6%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQ--SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            + ++   ++  + + + +          +D FP+                  +V+    
Sbjct: 7   RFALLNRLLVIALAIFLLVYGGWQAYHLPIDVFPNLNRPRV------------VVMTEAP 54

Query: 63  ---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + V   +    + + +                + I + F       N    V   L
Sbjct: 55  GMAPEEVETLITFPLETVLNGATGVQAVRTQSGVGLSVIYVEFDWGTDIYNDRQIVAERL 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L    K  L+  ++     I++     +  ++  +E           ++     
Sbjct: 115 ALSADTLPRSVKPQLMPISSIMGQ-IMIMGMYSEGGVTPPMELRTVADWVVRQRLLTIPG 173

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q +       Q     +P+ + +      ++       N +  G      +L D   N
Sbjct: 174 VSQVVVMGGERKQFQVLVNPNDMLRYGVNLHQVKQALSESNQNTAGG-----YLDDQGPN 228

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
           + LV     ++ I                   I   ++        T+       A   +
Sbjct: 229 ELLVRSLGRVTSIDDLSRIVIAHHDGQ----SIRLAQVAKIVEGAQTKRGDSTAFARDAE 284

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G     P +   +       +   T +    LA +  +    +++     +       + 
Sbjct: 285 GNFDGGPAVVLTVMKQPDADTRRVTEQVVEALAELQPSLPPDVRMLPDLYQQKTFIDLAI 344

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                       LV+I+LF+ ++  +   +   +I L++++T  + +  G ++   ++ G
Sbjct: 345 ENVMEALRDGGILVVIILFLFLMNLRTTFITLTAIPLSIVITALVFATFGLSINTMTLGG 404

Query: 420 IVLGIGLAVDSNILVNERI------REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + + IG  VD  I+  E I         +   +     +        ++I    +  ++ 
Sbjct: 405 LAVAIGELVDDAIVDVENIFRRLRENRHSDNPKHPLLVVFQASCEIRNSIVYGTLIVVLV 464

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIF-IIRYKKMKSIDINPLS 529
            V LF      G       +   +S++ S+F ++++   +  + +   K         L 
Sbjct: 465 FVPLFALSGMEGRLFAPLGVAYIVSLVSSLFVSLTVTPVLSYWMLGNEKFAHEEKDGFLL 524

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
           R       + + F     W +     F++           +  +       + + 
Sbjct: 525 RGLKRMADVVMNFSVRMAWPILAVATFAVAVSGWGMLQLESDFLPPFNEGAVQIN 579



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 89/255 (34%), Gaps = 11/255 (4%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV-AQTRVLEMVKKKI 642
              + V+ +  +    +    D       G    L  ++    D+     +V+E + +  
Sbjct: 261 QVAKIVEGAQTKRGDSTAFARDAEGNFDGGPAVVLTVMKQPDADTRRVTEQVVEALAELQ 320

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLI 701
             + P   +              I   +  +     + ++I              +T + 
Sbjct: 321 PSLPPDVRMLPDLYQQKTFIDLAIENVMEALRDGGILVVIILFLFLMNLRTTFITLTAIP 380

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTTSISF 757
           L I  T   FA FG+  N   +  +   IG  V+D +V    ++ R+R+N          
Sbjct: 381 LSIVITALVFATFGLSINTMTLGGLAVAIGELVDDAIVDVENIFRRLRENRHSDNPKHPL 440

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA- 816
             ++ ++  E     VY ++   +  +P+    G     FA P+    +V+  SS+F++ 
Sbjct: 441 L-VVFQASCEIRNSIVYGTLIVVLVFVPLFALSGMEGRLFA-PLGVAYIVSLVSSLFVSL 498

Query: 817 --APILLFIYDWRAK 829
              P+L +      K
Sbjct: 499 TVTPVLSYWMLGNEK 513



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 93/269 (34%), Gaps = 13/269 (4%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                  +    + L       V L  V    ES     I+      E+     +      
Sbjct: 778  PFREDRNAMSRLVLETPTGGAVKLEDVARIYESDGPNTINR-----EQVRRRIIVQCNVS 832

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                  V+E +K+++  I              +   +     ++ V+ +   + +++ + 
Sbjct: 833  GRGLVDVVEDIKQRLAPIESRLPTGYFTEYSGQFESQQSASRMIAVLFAISMVGMFLVLY 892

Query: 688  F---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                    +L  +  L +    ++    L G    + ++   ++L G +  + +++ +  
Sbjct: 893  KMFQSINLSLQVMIALPMAFIGSVAALYLTGQTLTVASMVGFISLCGIASRNGILLINHY 952

Query: 745  RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF----AIP 800
               +K    + S R++I ++  + L   + T++ + I ++P+A+  G          A  
Sbjct: 953  LHLVKYEGETWS-REMIIRAGKDRLAPVLMTALTSGIGLVPLAMAAGEPGKEILYPVATV 1011

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +  G++ + S    +   +   +    A+
Sbjct: 1012 IIGGLITSTSLEFLVRPALFWTLGIHAAR 1040


>gi|330963633|gb|EGH63893.1| AcrB/AcrD/AcrF family protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 362

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 33/388 (8%), Positives = 83/388 (21%), Gaps = 39/388 (10%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +  +L   I   GL+      LP   + ++P+  P               + +   
Sbjct: 7   KRPNFAWVLALFILLAGLMA-----LPALPVAQYPNVAPP-------------QITITAT 48

Query: 62  EDDFVNG-FLQMYSDELRSFLKKEG---IGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
                    +   +  +   L           +       +I ++F      +    +V 
Sbjct: 49  YPGASAKVLVDSVTSVIEEELNGAKGMLYYESTSNSTGSAEINVTFVPGINPDMAQVEVQ 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN--IDQVISHAIEQSMEIIRQRIDQI 174
             ++   ++L        L         +++   +   D      +  +    R   ++I
Sbjct: 109 NRIKKAEARLPQTVLSQGLQVEQASSGFLMIYTLSYTGDSANKDTVALADYAARNVNNEI 168

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +          +    DP +L     +   ++      N       FG     
Sbjct: 169 SRVNGVGRLQFF-AAEAAMRVWIDPQKLVGFGLSIDDVNAAVRAQNVQVPAGSFGSSPGS 227

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   +  K  +                 +    +                 +    
Sbjct: 228 SLQELTATLAVKGTLDN-------------PEEFGRIVLRANEDGSTVHLSDVARVAIGS 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                   L                +   T++        L           V       
Sbjct: 275 QDYSFESRLNGKRAVAGAVQLSPGANAIETVKAVKQRLTELSVNFPEGVEFSVPYDTSRF 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
              +      T      LV +V+F+ + 
Sbjct: 335 VDVAIDKVIYTLIEAMVLVFLVMFLFLQ 362


>gi|300789708|ref|YP_003769999.1| integral membrane export protein [Amycolatopsis mediterranei U32]
 gi|299799222|gb|ADJ49597.1| putative integral membrane export protein [Amycolatopsis
           mediterranei U32]
          Length = 683

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/492 (12%), Positives = 150/492 (30%), Gaps = 36/492 (7%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL- 426
           +     L++L  +        +   +    V  TL +++++   + + S    ++ +   
Sbjct: 176 VGLLAALVILVFLFRSLLAAGLPVLTAVFAVGSTLGVITVVSHFVDIASYTSPLMMLVGF 235

Query: 427 --AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
              VD  +L+  R R E         +       A  ++  +  T +IA + L   G G 
Sbjct: 236 GVGVDYALLIFSRYRTEILAGYDRDSAARRALDTAGRSVLFAGTTVIIALLGLLALGLGG 295

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           +RG A+ + L++L++M  +++++ A++    +  +                  +A    R
Sbjct: 296 LRGVALAVALTVLMTMLASVTLLPALLSLFGKRVERGIRRHALRKEHGKAWRRLADGVQR 355

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV--------------- 589
                + I +   I          L +                 +               
Sbjct: 356 RPVAPLAIGLTVLIGLSIPAAGMRLGFADASTDPAGSTTRQAYDLLAEGFGPGFTGPLAI 415

Query: 590 ---DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D   +    +      I+       K  LV     P D      V  +    +  + 
Sbjct: 416 VTEDGDTLALQRKLADTPGIARVLPPTGKTVLVFPATSPQDEATAELVTRLRADVLPTLP 475

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
               +  +       +  +  +  + V++      + + + F+     L A    +L I 
Sbjct: 476 GHYLVGGSVAAATDFAGAVADRLPLFVLVVVGLSALLLMVVFRSILIPLKAALLNLLSIG 535

Query: 706 KTLGFF------ALFGIEFNLT----AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            +LG          FG +         V     + G S++ +V +  RM +  +    + 
Sbjct: 536 ASLGVMTLVFGDGWFGAQPGPIEAFVPVMIFAIVFGLSMDYEVFLVSRMHEEWR---RTG 592

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFI 815
             R  + + +  T            +      +    ++  F + +A  +++ A     +
Sbjct: 593 DARLAVREGLASTGAVITAAGAIMVLVFGAFLLDPSRMLAQFGLGLAVAVLLDALVIRCL 652

Query: 816 A-APILLFIYDW 826
               I+  +   
Sbjct: 653 LVPAIMRLLGAR 664



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/249 (10%), Positives = 75/249 (30%), Gaps = 10/249 (4%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A     L  VRS      + D         +     + +    +      +        
Sbjct: 90  RAPIATMLGEVRSLPHVRSVSDPLETLSADGRIGYATVTFDAASTDLPYDDIVKFADTAK 149

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
              P+      + +          +G+  +    I + ++         A   + T +  
Sbjct: 150 RAGPVEVALAGDPIERTAKSGGPAEGVGLLAALVILVFLF----RSLLAAGLPVLTAVFA 205

Query: 704 ITKTLGFFALFGIEFNLTAVA---AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           +  TLG   +     ++ +      +L   G  V+  ++++ R R  +            
Sbjct: 206 VGSTLGVITVVSHFVDIASYTSPLMMLVGFGVGVDYALLIFSRYRTEILA---GYDRDSA 262

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             ++++      ++      I++L +   G   +   A+ +A  +++   +S+ +   +L
Sbjct: 263 ARRALDTAGRSVLFAGTTVIIALLGLLALGLGGLRGVALAVALTVLMTMLASVTLLPALL 322

Query: 821 LFIYDWRAK 829
                   +
Sbjct: 323 SLFGKRVER 331


>gi|186477162|ref|YP_001858632.1| acriflavin resistance protein [Burkholderia phymatum STM815]
 gi|184193621|gb|ACC71586.1| acriflavin resistance protein [Burkholderia phymatum STM815]
          Length = 1013

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/664 (9%), Positives = 172/664 (25%), Gaps = 46/664 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
                 ++  +I  +GL       L    +  +P               G   +      
Sbjct: 10  RPVLASVVSLLILVLGL-----RALSTLKVSEYPQTE-----------NGVVTITTSYYG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D + GF+    +   +  +       +     + IT +   +        ++   + 
Sbjct: 54  ASADTMAGFITQPLEAAIAQAQGIDYMSSTSTTGVSTITATLRLNYDSNRALTEINTQIA 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V ++L    ++ +L     +    +        + S+ +  +  ++R    ++   +  
Sbjct: 114 SVRNQLPPQAQQPVLTVQVGQTTDAMYMGFYSTVLPSNNV--TDYLLRVVKPKLDSVQGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L    D ++L     T + +       N                    
Sbjct: 172 QTAEVLGGRQFALRAWLDSAKLAAHNVTASDVFTALGSNNYLATLGTTK------GQMIS 225

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    ++               +      +   +            N+          
Sbjct: 226 VDLNAGTDL--------------HSVDDFRKLVVKQKNGAIVRLEDVGNVVLGADSYDFN 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
              +               +     +    +   L+          +          +  
Sbjct: 272 VAFSGKRSVFIGIKVAPDANVLDVAKRVKAIFPDLQKQFPTGMTGDIVYDATDFINTAID 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T      +V +V+F+ +   +  +V   ++ L++I T  ++ LLG ++ L ++  +
Sbjct: 332 EVVKTLVEALLIVTVVIFLFLGSFRAVIVPVIAMPLSLIGTFFVMQLLGYSINLLTLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           VL IGL VD  I+V E +      + +  F +  +        I    +  +   + + F
Sbjct: 392 VLAIGLVVDDAIIVVENVDRHMKEEGKQPFEAALIAARELGGPILAMTVVLIAVYLPIGF 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK--MKSIDINPLSRFFLI 534
            G   G     FA T+  ++ +S   A+S+   M     R  +   +           + 
Sbjct: 452 QGGLTGALFTEFAFTLAGAVAVSGVIALSLSPMMCSRFFRMDQESGRFARFVDGQFERVH 511

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                +       W V I +   +    +         +  +    + +   +    + +
Sbjct: 512 RGYARLLHAMLDTWPVFIVMGALLLCGTVYLFMTSQAELAPQEDQGIVLSQIQGPPNATI 571

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           +             +                 +      + +   K+      L      
Sbjct: 572 QQMQTYADQVFEISKGLPEYSQMFQLTGAPTLNQGIGGVLFKTWDKRKKNATQLQQELQA 631

Query: 655 EIVG 658
           +  G
Sbjct: 632 KWNG 635



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 83/233 (35%), Gaps = 6/233 (2%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V L  V + +      D +         F+        + +   + ++ +   + +  P 
Sbjct: 253 VRLEDVGNVVLGADSYDFNVAFSGKRSVFIGIKVAPDANVLDVAKRVKAIFPDLQKQFPT 312

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKT 707
               +            I + +  ++ + + + + I++    +   +  +  + L +  T
Sbjct: 313 GMTGDIVYDATDFINTAIDEVVKTLVEALLIVTVVIFLFLGSFRAVIVPVIAMPLSLIGT 372

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                L G   NL  + A++  IG  V+D ++V + +  +  +        +    +  E
Sbjct: 373 FFVMQLLGYSINLLTLLALVLAIGLVVDDAIIVVENV--DRHMKEEGKQPFEAALIAARE 430

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             G  +  ++      LP+   G   G++   FA  +A  + V+   ++ ++ 
Sbjct: 431 LGGPILAMTVVLIAVYLPIGFQGGLTGALFTEFAFTLAGAVAVSGVIALSLSP 483



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 67/159 (42%), Gaps = 9/159 (5%)

Query: 670  IVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI-EFNLTAVAAVL 727
            +V ++ + I + + +  +F+ +   +  + ++ + +   L  F   G+   N+     ++
Sbjct: 849  VVTLMFATIIVFLALAAQFESFRDPVVILVSVPMALFGAL-IFINMGLSTLNIYTQVGLV 907

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            TL+G      +++     +   L       R+ ++++    L   + T+ A  + VLP+ 
Sbjct: 908  TLMGLVSKHGILIVQFANE---LQRAGRGKREALEEAAAVRLRPILMTTAAMVLGVLPLV 964

Query: 788  VWGGSVIGS---FAIPMAFGIVVAASSSIFIAAPILLFI 823
            +  G+         + +  G+ +    ++F+   + + +
Sbjct: 965  IASGAGAAGRNAMGLVIFSGLSIGTLFTLFVVPAMYMLL 1003


>gi|77359272|ref|YP_338847.1| cation efflux system protein [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874183|emb|CAI85404.1| cation efflux system protein cusA [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 1038

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 69/590 (11%), Positives = 161/590 (27%), Gaps = 39/590 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + V+L ++I   G L A+ N    + +D  P       I                   
Sbjct: 12  NRFFVLLLTVILIGGGLFAVKN----TPVDALPDLSDVQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F +         +V  +L  V 
Sbjct: 59  QVVQDQVTFPLTTAMLSVPGAQTVRGFSFFGDSYVYVIFDEKTDLYWARSRVQEYLSQVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S+L       L    T     I L             +           ++       + 
Sbjct: 119 SRLPATASAELGPDATGVGW-IYLYALVDKTNQHDISQLRSLQDWFLKFELQTVPGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q     DP +LR      + +       N      +  +        +   +
Sbjct: 178 ASVGGMVKQYQVTVDPDKLRAYGIPLSLIQTAIAQGNQEMGASVVEMAEAEYMVTSTGYI 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +   ++                    + +  +            D    P        + 
Sbjct: 238 KSVADLEA------------------IPLGVNTNATPLQLRDVADIRLGPQMRRGIAELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   +   +   +   TIE        L+ G       +           +     
Sbjct: 280 GEGEVAGGVVVMRFGENAQKTIELVKAKLESLKKGLPAGVEIVPVYDRSNLIKDAVDNLS 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   +V +V  + + + +  LVA  ++ L ++    ++   G    + S+ GI + 
Sbjct: 340 SKLLEELVVVALVCIVFLFHVRSSLVAIITLPLGILTAFLIMYWQGINANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG   D  I++ E + +   K    +++ +  +    S     +F S +   ++ + +F 
Sbjct: 400 IGAMTDGAIVMIENMHKHMEKTPLTDENRWQVVIDSASEVGPALFFSLMIITVSFMPVFI 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  S   AI++V  +M + IR K +                
Sbjct: 460 LEAQEGRMFAPLAYTKTYAMAASAGLAITLVPVLMGYFIRGKVISEQKNPVNRMLVNAYK 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +    ++     + ++ L ++     +   G  +      G  + +   
Sbjct: 520 PLLNAVLKFPKATLALATLIAVIGFYPVNKMGSEFIPPLDEGDLMYMPTT 569



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 84/260 (32%), Gaps = 16/260 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   A + + L+ V           I  +N        + ++     +  +     + +
Sbjct: 780  PIVTPAGQRIALADVAKVFIEDGPAGIKSENARLNGWSFIDIENIDIGTYVENAQQILHE 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + I       T         +   +L    ++ + ++ I +L+Y+  R  +   L  I T
Sbjct: 840  QLILPAGYSITWAGQYEYMQRAKDKL--AYVLPLTLAIIVVLLYLNFR-SFAEVLIIIVT 896

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS--- 756
            L L +   +    L G  F++      + L G +V   V++   + +  +   T      
Sbjct: 897  LPLAMIGGIWLMYLEGFNFSVAVGVGFIALAGVAVEIGVIMLVYLNQAYQEKITQAQQTG 956

Query: 757  -------FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
                    +  I +     +   + T     I +LP+      G  ++   A PM  G+ 
Sbjct: 957  VPLNYEQLKQAITEGAGLRVRPVMMTVATIVIGLLPVLYGTGTGSEIMSRIAAPMVGGMF 1016

Query: 807  VAASSSIFIAAPILLFIYDW 826
             A   ++ +     L     
Sbjct: 1017 SAVVLTLLVIPATYLLWRKR 1036



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/160 (19%), Positives = 68/160 (42%), Gaps = 6/160 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+++ + ++      F    +L AI TL L I          GI  N+ ++  +   IG 
Sbjct: 347 VVVALVCIV----FLFHVRSSLVAIITLPLGILTAFLIMYWQGINANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  +V+ + M K+M+    +   R  ++  S +E      ++ M   +S +P+ +   
Sbjct: 403 MTDGAIVMIENMHKHMEKTPLTDENRWQVVIDSASEVGPALFFSLMIITVSFMPVFILEA 462

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                FA P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 463 QEGRMFA-PLAYTKTYAMAASAGLAITLVPVLMGYFIRGK 501


>gi|330685124|gb|EGG96788.1| RND transporter [Staphylococcus epidermidis VCU121]
          Length = 1054

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 66/684 (9%), Positives = 176/684 (25%), Gaps = 41/684 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + + L  ++  +G + A      +  L+  P                     +     
Sbjct: 12  NKFAIFLMVLLVILGGVYASA----KLKLELLPDVENPMI---------SVQTTMPGATP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 +    D     +           Q  + +T+ + +    +   +++   +  + 
Sbjct: 59  QTTQDEISSKIDSQVRSMAYVKSVKTESIQNASIVTVEYNNDTDMDKAEEQLKKEIDKIK 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                      L   +     I+          +     + ++ +Q I ++   +     
Sbjct: 119 --FKDGVSDPELTRNSMDAFPIIAYSLTDKD--NDLKSVTKKLNQQLIPKLQTIDGVQNA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS------- 236
             + +   ++  +     L     T   +  +           +F       S       
Sbjct: 175 QLNGQTNREVTLKFKQKELDSKGVTADDVENYLKTATRETPLGLFQFGDTDKSIVVDGQF 234

Query: 237 ----------DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVT 286
                            + +   SG   N  + +  P               +   F++ 
Sbjct: 235 TSVDAFKNLKIPATIAGQGQSSESGSADNQDSESLMPSEPSSASSSKQGSSSSMPSFKLK 294

Query: 287 RDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI 346
                                      +     +     +            +  +K   
Sbjct: 295 DVADISVGDERTSISKTNGKDAVNLQITKAQDANTVQVAKDVQKKVDEFEKNNSEMKAIK 354

Query: 347 VEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLS 406
                      S        A+   + ++V+ + +   +   ++  SI +++++ L  L 
Sbjct: 355 -TMDTAKPIEDSLYTMIEKAALGTIVAIVVILLFLRNIRTTAISIVSIPMSILIALVALK 413

Query: 407 LLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTI 463
           L   +L + ++  + + IG  +D +I+V E I                +    +  +  I
Sbjct: 414 LSNVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLSDRNEQLKGDSLIVSATTEVFKPI 473

Query: 464 FDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             S +  +I  + L F     G   R FA+ +  S+L S+  +I++V A+   + R    
Sbjct: 474 LSSTLVTIIVFLPLAFVSGSVGEMFRPFALAITFSLLASLLVSITVVPALGSTLFRKGIQ 533

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
                            +    +  ++  + ISI+  + SI L         I       
Sbjct: 534 TKPQKQAQGVISTGYKKLLNWSLNHKWIVIIISIVLLVGSIGLGAAKLGTSYISSGDNKF 593

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +        +         Q+          +          P D    T  + ++  
Sbjct: 594 MALTYTPKPGETEKSVLEHGEQVQKYLKTKNKVKTVQYSVGGPTPSDPTGSTNSMALMVD 653

Query: 641 KITEIVPLSTIQNTEIVGPKISRE 664
              +        +  +      + 
Sbjct: 654 YDKDTPNFEEEPDKVLKHVDSFKH 677



 Score = 93.6 bits (230), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/242 (13%), Positives = 87/242 (35%), Gaps = 5/242 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +++          +    +   L   + Q  ++V   + ++    +  +         T 
Sbjct: 297 ADISVGDERTSISKTNGKDAVNLQITKAQDANTVQVAKDVQKKVDEFEKNNSEMKAIKTM 356

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                I   L        + + +A+++ +           +I ++ + I   L    L  
Sbjct: 357 DTAKPIEDSLYTMIEKAALGTIVAIVVILLFLRNIRTTAISIVSIPMSILIALVALKLSN 416

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +  N+  + A+   IG  ++D +VV + + + +      +    LI  +  E     + +
Sbjct: 417 VSLNILTLGALTVAIGRVIDDSIVVVENIYRRLSDRNEQLKGDSLIVSATTEVFKPILSS 476

Query: 776 SMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW--RAKN 830
           ++   I  LP+  V G  G +   FA+ + F ++ +   SI +   +   ++    + K 
Sbjct: 477 TLVTIIVFLPLAFVSGSVGEMFRPFALAITFSLLASLLVSITVVPALGSTLFRKGIQTKP 536

Query: 831 AR 832
            +
Sbjct: 537 QK 538



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 63/149 (42%), Gaps = 14/149 (9%)

Query: 688  FKWYFAL-GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            F   F+L   +  ++L +  T       G   ++ ++  +L LIG  V + +V+ DR+  
Sbjct: 911  FTILFSLPFTVIGVVLSLVIT-------GETISVPSLIGMLMLIGIVVTNAIVLIDRV-- 961

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAF 803
             +    + +  +  + ++    +   + T++A   +++P+     S I      A  +  
Sbjct: 962  -INNEKSGMDMKSALIEAGGTRIRPILMTAIATIGALVPLLFGEDSSILISKGMAATVIG 1020

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            G++ +   ++ +   I   ++  + K  R
Sbjct: 1021 GLISSTILTLIVVPVIYEILFTLKDKIYR 1049


>gi|300773697|ref|ZP_07083566.1| efflux transporter [Sphingobacterium spiritivorum ATCC 33861]
 gi|300759868|gb|EFK56695.1| efflux transporter [Sphingobacterium spiritivorum ATCC 33861]
          Length = 1059

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 62/613 (10%), Positives = 162/613 (26%), Gaps = 40/613 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  M+  + +     N + +  +D FP                   +        +++GF
Sbjct: 12  IAIMVVVLAIAFFSYNTIKKINIDIFPEVELPAMY---------VAMPYGGLSPAYMDGF 62

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +     ++  F+       F   Q    + L+F         A +V+  +      L   
Sbjct: 63  MANEFQKVLLFVSGVKNIDFKSVQGLTLMKLTFYPGTNMAQAAGEVSTSVSRAMGFLPPG 122

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               ++V      + +       D       E     + +                    
Sbjct: 123 AVPPMVVRFDGSSLPVGNLVFESD--QRSVNEIQTLALTKIRPMFVQIPGITSPAPFGGN 180

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           +  +    DP  ++    +   ++      +         +           + +   E+
Sbjct: 181 VRSIVINIDPDAMQANGLSPEDITVAITRNSLPSPAGNIRIGEENLMAPINSIAKGPEEL 240

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                               +         R  +      +       +   ++      
Sbjct: 241 --------------------LKTPVKTSANRTIYVGDVARVEDGADQTVGYALINGKRSV 280

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 KA  S    +E       ML+           E         S S       + 
Sbjct: 281 YLPIIKKADASTLDAVENLKNAIPMLKDQLPEDVKVSYEFDQSSYIERSLSNLIHEGILG 340

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A    +V+ + +   +  ++  F+I + V+  +  L L G T+ + +++G+ L IG+ VD
Sbjct: 341 AVFTGLVILLFLGDTRGAIIVVFTIPIAVLSAVTTLYLFGQTINIMTLSGLALSIGILVD 400

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLFFFGGGAVR 486
              +  E I +     +    ++             I    +  L    ++         
Sbjct: 401 EATVTIENIHQHMEMGKPKQRAIVDALLEISIPKLLILLCILAVLTPAFIMTGIPKDMFM 460

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------KSIDINPLSRFFLIPDCIAI 540
             ++ +  +++ S   + + V  +  ++++ K        +        R          
Sbjct: 461 PLSMAVAFAMIASFLASQTFVPILANWMMKNKHNSKTISARKRAFFDKFRVNYSYSMRKW 520

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
                  + V + +   I  + L         +   G  QL + A +   +      ++ 
Sbjct: 521 STKAVPLFIVYVLVACVITGLLLTVVGTDVMPVSNNGDFQLRIQAPQGSRIEKTEQIVKD 580

Query: 601 LQIGDISFQNFDG 613
           +     +    +G
Sbjct: 581 ITNEIKAELPENG 593



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 90/281 (32%), Gaps = 10/281 (3%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 +   + +  G +      +   ANR + +  V    +                 
Sbjct: 221 IGEENLMAPINSIAKGPEELLKTPVKTSANRTIYVGDVARVEDGADQTVGYALINGKRSV 280

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVII 675
           +L  ++     ++     L+     + + +P     + E          +   I  G++ 
Sbjct: 281 YLPIIKKADASTLDAVENLKNAIPMLKDQLPEDVKVSYEFDQSSYIERSLSNLIHEGILG 340

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           +    L+ +        A+  + T+ + +   +    LFG   N+  ++ +   IG  V+
Sbjct: 341 AVFTGLVILLFLGDTRGAIIVVFTIPIAVLSAVTTLYLFGQTINIMTLSGLALSIGILVD 400

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           +  V  + +    +        +  I  ++ E     +   +     + P  +  G    
Sbjct: 401 EATVTIENIH---QHMEMGKPKQRAIVDALLEISIPKLLILLCILAVLTPAFIMTGIP-K 456

Query: 796 SFAIPMAFGIVVAASSSIFIAA----PILLFIYDWRAKNAR 832
              +P++  +  A  +S F+A+    PIL         N++
Sbjct: 457 DMFMPLSMAVAFAMIAS-FLASQTFVPILANWMMKNKHNSK 496


>gi|27468752|ref|NP_765389.1| acriflavin resistance protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57867742|ref|YP_189406.1| AcrB/AcrD/AcrF family protein [Staphylococcus epidermidis RP62A]
 gi|251812037|ref|ZP_04826510.1| RND superfamily resistance-nodulation-cell division
           acriflavin:proton (H+) antiporter [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282875332|ref|ZP_06284205.1| RND transporter, HAE1/HME family, permease protein [Staphylococcus
           epidermidis SK135]
 gi|293368423|ref|ZP_06615047.1| RND superfamily resistance-nodulation-cell division
           acriflavin:proton (H+) antiporter [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|27316300|gb|AAO05475.1|AE016750_80 acriflavin resistance protein [Staphylococcus epidermidis ATCC
           12228]
 gi|57638400|gb|AAW55188.1| AcrB/AcrD/AcrF family protein [Staphylococcus epidermidis RP62A]
 gi|251804371|gb|EES57028.1| RND superfamily resistance-nodulation-cell division
           acriflavin:proton (H+) antiporter [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281296097|gb|EFA88618.1| RND transporter, HAE1/HME family, permease protein [Staphylococcus
           epidermidis SK135]
 gi|291317381|gb|EFE57803.1| RND superfamily resistance-nodulation-cell division
           acriflavin:proton (H+) antiporter [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329736456|gb|EGG72724.1| RND transporter protein [Staphylococcus epidermidis VCU028]
 gi|329737003|gb|EGG73258.1| RND transporter protein [Staphylococcus epidermidis VCU045]
          Length = 1051

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 60/671 (8%), Positives = 173/671 (25%), Gaps = 39/671 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + + L  ++  +G + +      +  L+  P                     +     
Sbjct: 12  NKFAIFLMVVLIILGGVYSSA----KLKLELLPDVENPVI---------SVQTTMSGATP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 +    D     L              + +T+ + +    +   +++   +  + 
Sbjct: 59  QSTQDEISSKIDNQVRSLAYVNSVQTESIPNASIVTVEYDNGTDMDKAEEQLKKEIDKIK 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                   +  L   +     IV      +       + + ++ +Q + ++   +     
Sbjct: 119 --FKDGVGEPELTRNSMDAFPIVAYSFTSNNQK--LKDVTKKLNQQLVPKLQTIDGVQNA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD------ 237
             + +   ++  +     L +   T   +  +           +F       S       
Sbjct: 175 QLNGQTNREVSLKFKQKNLDEKGLTANDVENYIKTATRETPLGLFQFNKSNKSIVVDGQF 234

Query: 238 ---------GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                         +  +   +    +  +      T          + G      +   
Sbjct: 235 KSVDAFKNLKIPLSISGQAAQNDSDSDSDSLMPSDNTRSTNSSTHMAQKGQMPSVPLKDL 294

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
                                          +                     +K     
Sbjct: 295 ADISVGDERTSISKTNGKDAVNLQIMKSQDANTVQVAREVQKKVDEFVRNESGMKSIK-T 353

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                    S        A+   + +IV+ + +   +   ++  SI +++++ L  L L 
Sbjct: 354 MDTAKPIEDSLYTMVEKAALGTIVAIIVILLFLRNIRTTAISIVSIPMSILIALIALKLS 413

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ---SVFCSLDMGFSRAYSTIFD 465
             +L + ++  + + IG  +D +I+V E I                +       +  I  
Sbjct: 414 NVSLNILTLGALTVAIGRVIDDSIVVVENIFRRLSDPNEKLKGENLIISATREVFKPIMS 473

Query: 466 SNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           S +  ++  + L F     G   R FA+ +  S+L S+  +I++V ++     +      
Sbjct: 474 STLVTIVVFLPLVFVSGSVGEMFRPFALAITFSLLASLLVSITLVPSLGATFFKNGVKNR 533

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                L              +  ++  + +SI   + S+ +   +     I       L 
Sbjct: 534 EQKEGLGTVGRAYRSALNWSLNHKWIVLIVSIFILVGSVVIGARNLGTSYISTGDNKFLA 593

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +        +       + ++ +   +    E          P D    T  + ++ K  
Sbjct: 594 LTYTPKPGETQKSVTQHAEKVQNYLDKKDKVETVQYSIGGPTPQDPTGSTNSMAIMIKYQ 653

Query: 643 TEIVPLSTIQN 653
           ++        +
Sbjct: 654 SDTPNFDEEPD 664



 Score = 88.6 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 86/239 (35%), Gaps = 3/239 (1%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +++          +    +   L  ++ Q  ++V   R ++    +            T 
Sbjct: 295 ADISVGDERTSISKTNGKDAVNLQIMKSQDANTVQVAREVQKKVDEFVRNESGMKSIKTM 354

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                I   L        + + +A+++ +           +I ++ + I   L    L  
Sbjct: 355 DTAKPIEDSLYTMVEKAALGTIVAIIVILLFLRNIRTTAISIVSIPMSILIALIALKLSN 414

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           +  N+  + A+   IG  ++D +VV + + + +      +   +LI  +  E     + +
Sbjct: 415 VSLNILTLGALTVAIGRVIDDSIVVVENIFRRLSDPNEKLKGENLIISATREVFKPIMSS 474

Query: 776 SMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   +  LP+  V G  G +   FA+ + F ++ +   SI +   +    +    KN 
Sbjct: 475 TLVTIVVFLPLVFVSGSVGEMFRPFALAITFSLLASLLVSITLVPSLGATFFKNGVKNR 533



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 97/267 (36%), Gaps = 6/267 (2%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
             N   D+       +  N+P   ++  S + SL+      +    + ++   +  +  D 
Sbjct: 784  QNKQTDWSSQKIKNIKLNKPTGGTIKLSEIASLKKSYTPSKLTQEDGDYATTVTGKVTDK 843

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                +  +++ K      P     N       I + + +  +  +    I  LI +    
Sbjct: 844  DVGGKSQQVMAKVKDLEKPSHIKINVGGATDDIDKAISQLAMAMIAAIIIVYLILVITFR 903

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                    + +L   +   +    + G   ++ ++  +L LIG  V + +V+ DR+   +
Sbjct: 904  GGLAPFTILFSLPFTVIGVVLALIITGETISVPSLIGMLMLIGIVVTNAIVLIDRV---I 960

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFGI 805
                  +  +  + ++    +   + T++A   +++P+     S I      A  +  G+
Sbjct: 961  NNEKQGMPMKQALIEAGGTRIRPILMTAIATIGALVPLLFGHDSSILISKGMAATVIGGL 1020

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
            + +   ++F+   I   ++  + K  +
Sbjct: 1021 ISSTLLTLFVVPVIYEILFTLKNKITK 1047


>gi|126173083|ref|YP_001049232.1| acriflavin resistance protein [Shewanella baltica OS155]
 gi|125996288|gb|ABN60363.1| acriflavin resistance protein [Shewanella baltica OS155]
          Length = 1063

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 72/674 (10%), Positives = 177/674 (26%), Gaps = 45/674 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+    +L   +   GL            +       P   ++L         +     
Sbjct: 13  RNSVAANLLMWALLVGGLFS---------TVLINKEVFPSFELNL-----LNISVAYPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   + +  +E    +           +    IT+   D    + + D+  L L  
Sbjct: 59  APQEIEEGINIKIEEAIQDINGIKKVTSVASEGVGSITVEVEDGYEVQTVLDEAKLRLDA 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S   V+ +K  +      E +++      D  +    E +    +   D +    +  
Sbjct: 119 I-STFPVNIEKPNIYQIK-PENNVIWVSVYGDMTLHDMKELA----KSVRDDLTQLPAVT 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++  E    +LR+   T  +++      +    G           DG+  
Sbjct: 173 RAKVTGVRDYEIAIEVSEDKLREYGLTFTQVALAVQNSSFDLPGGSIRA-----QDGDIL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L       +G                    +        R        I       L+  
Sbjct: 228 LRTKGQAYTGDD--------------FANIVVTTRPDGSRVMLPQVATIKDDFEERLEYT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +               RA                   G  ++
Sbjct: 274 RFNGKPAAIIEVTSVDDQNALDIAAQVKQYVEDRRATLPANAQLDTWGDMTHYLKGRLNM 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL--LGATLTLPSIAG 419
                   A LV I+L M +   K        + +  + T+ ++ L     T+ + ++  
Sbjct: 334 MMSNMFYGALLVFIILAMFL-DLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFA 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +L +G+ VD  I++ E    E  ++     ++  G  +         +T + A + +  
Sbjct: 393 FILVLGIVVDDAIVIGESAYTEVERHGHSVDNVIRGAKKVAMPATFGVLTTIAAFIPMLM 452

Query: 480 FGGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G      +   + + L +  S+  +  I+ A +  +   K           +      
Sbjct: 453 VSGPMGIIWKSIGMVVILCLAFSLVESKFILPAHLAHMKFKKPGAPRGFFGRLKANFNDR 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R +               +    L+  +   G ++     + P D   V+ 
Sbjct: 513 VQHFIHHSYRNFLERCIKQRYNVVAAFIGVLILSIALVASGKVRWVFFPDIPSDFIQVQL 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++     + + +     +  L ++  +         V        +        + T+ 
Sbjct: 573 EMDEGSSEENTLKVVQSIEEALYKMNDKMEQDNGYQVVKHSFINMSSRTSAFIFAELTKG 632

Query: 657 VGPKISRELIRKGI 670
              ++    I    
Sbjct: 633 EDREVDGVTIAAAW 646



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 88/256 (34%), Gaps = 10/256 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       +               S    DG++   +              V E+ K  +
Sbjct: 778  IRTPTGTSVPFSTVAQIEKGESYASITRVDGKRAITITANANKNIVEPSKVVQEIQKDYL 837

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             ++        T + G  +  +    G++ G   +   +   + I  K  ++   I   +
Sbjct: 838  PQLQAKYPKIQTALDGGSLDEQNAMVGLMQGFFFALFTIYALMAIPLK-SYSQPLIIMSV 896

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +        F     G+  ++ ++  ++ L G  VND +++ D +    +      S R 
Sbjct: 897  IPFGIIGALFGHLIQGLAMSVLSLCGIVALAGVVVNDSLILVDFVN---REREQGQSVRQ 953

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                S        + TS+  F+ ++P+ +       ++   A  +AFGI+ +   ++ + 
Sbjct: 954  AAVDSGCYRFRAIILTSLTTFVGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILV 1013

Query: 817  APILLFIYDWRAKNAR 832
              + + + D    ++R
Sbjct: 1014 PLLYIILDDVSRSSSR 1029



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 89/280 (31%), Gaps = 8/280 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI      I L        G DF   +         V L  V +  +  +      +   
Sbjct: 218 SIRAQDGDILLRTKGQAYTGDDFANIVVTTRPDGSRVMLPQVATIKDDFEERLEYTRFNG 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +        +++     ++   +     +P +   +T        +  +   +  
Sbjct: 278 KPAAIIEVTSVDDQNALDIAAQVKQYVEDRRATLPANAQLDTWGDMTHYLKGRLNMMMSN 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
           +   A+ + I + +      A   +  L +    T+    L  F +  N+  + A + ++
Sbjct: 338 MFYGALLVFIILAMFLDLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFAFILVL 397

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ +      ++     S  ++I  +    +  +    +    + +PM +  
Sbjct: 398 GIVVDDAIVIGESA--YTEVERHGHSVDNVIRGAKKVAMPATFG-VLTTIAAFIPMLMVS 454

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G +     S  + +   +  +   S FI    L  +   +
Sbjct: 455 GPMGIIWKSIGMVVILCLAFSLVESKFILPAHLAHMKFKK 494


>gi|27380044|ref|NP_771573.1| cation efflux system protein [Bradyrhizobium japonicum USDA 110]
 gi|27353198|dbj|BAC50198.1| blr4933 [Bradyrhizobium japonicum USDA 110]
          Length = 1052

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 71/561 (12%), Positives = 157/561 (27%), Gaps = 40/561 (7%)

Query: 12  SMICCIGLLIALPNFLPQS---MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            ++   G   A    L       LD  P       I          +   +      +  
Sbjct: 13  LLLVLFGTGFAAAAGLYALLHLPLDAIPDLSDTQVI---------VYTEYQGQAPQVIED 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +          + +  +         + + + F D         +V  FL G  S+L  
Sbjct: 64  QVTYPLTTAMLTVPRSKVVRGFSFFGVSFVYVIFEDGTDIYWARSRVLEFLNGAASRLPA 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                +    T        +  + +  ++                +  +E   +      
Sbjct: 124 GVTPTIGPDATGVGWVYQYAVMSKELNLAETRTIQD---WNLKFALAKAEGVAEIASIGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            + Q     DP R+R L  T  KM       N    G    +         +  ++   +
Sbjct: 181 FVRQYNVILDPQRMRDLGITMQKMRDAIRASNADVGGRTVELSEFEYVIRGKGYLKSVDD 240

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           I                      +   + G              P        +     +
Sbjct: 241 IG-------------------NIVLKTDNGTPVKLRDVARVELGPDERRGIAELNGEGEV 281

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +  ++    IE        +          +           +    + T   
Sbjct: 282 ASGIVLQRFGMNALDVIEGVKKRFREIATSLPKSVEIVPVYDRSNLIKAAIETLRHTLLE 341

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + +V +V  + +L+ +  LVA   + + V++    + LLG    + S+ GI + IG  +
Sbjct: 342 ESIVVALVCIVFLLHVRSALVAILMLPVGVLMAFGAMKLLGIGSNIMSLGGIAIAIGAMI 401

Query: 429 DSNILVNERIREENR---KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           D+ I++ E   +         S    L    +     +F S +   ++ + +F      G
Sbjct: 402 DAAIVMIENAHKHLERAAPGHSRVAILIEAAAEVGPALFFSLLIITVSFMPIFTLESQEG 461

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   ++  +   ++++V A+M+  +R + +             I   +    
Sbjct: 462 RLFSPLAFTKTFAMAAAALLSVTLVPALMVIFVRGRIIPEHKNPINRFLIWIYRPVISGV 521

Query: 543 MRARFWGVGISILFSICSICL 563
           +RAR   + +++     SI  
Sbjct: 522 LRARIPVILLALGVLAASIWP 542



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++++ + ++  + +R     AL AI  L + +    G   L GI  N+ ++  +   IG
Sbjct: 343 SIVVALVCIVFLLHVR----SALVAILMLPVGVLMAFGAMKLLGIGSNIMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             ++  +V+ +   K+++      S   ++ ++  E      ++ +   +S +P+     
Sbjct: 399 AMIDAAIVMIENAHKHLERAAPGHSRVAILIEAAAEVGPALFFSLLIITVSFMPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRLFSPLAFTKTFAMAAAALLSVTLVPALMVIFVRGR 497



 Score = 46.2 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 19/152 (12%)

Query: 697  ITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT-- 752
            I  L L      G       G   ++      + L G +    VV+   +  N  L    
Sbjct: 889  IVMLSLPFALVGGLWLMWWLGFNLSVAVAVGFIALAGVAAETGVVML--IYLNHALAETE 946

Query: 753  ----------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
                      T       I +   E +   + T +A    +LP+      G  ++   A+
Sbjct: 947  ARCARAGRVLTRDDLDKAIMEGAVERVRPKMMTVVAIMAGLLPIMWSSGTGSEIMQRIAV 1006

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            PM  G++ +   ++ +   I   +  +  +  
Sbjct: 1007 PMIGGMISSTLLTLIVIPAIFGLVKGFGLRTG 1038


>gi|300024943|ref|YP_003757554.1| acriflavin resistance protein [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299526764|gb|ADJ25233.1| acriflavin resistance protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 1060

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 70/549 (12%), Positives = 157/549 (28%), Gaps = 38/549 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     ++L  +I   G L A+   +      R P      +   GL            
Sbjct: 9   LRLPYTFIVLALLILIAGGLAAIRTPVDIFPEIRIPVIATVWQYK-GLP----------- 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             DD     +  +   L + +        +       + + F           +VT   Q
Sbjct: 57  -PDDMAGRMVTPFQRALTTTVNDIEHIEANSYSGIGVVKIFFHPKVNISVANAQVTAIAQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +L       L++  +   + I+      + +       +   + Q   ++      
Sbjct: 116 TMLRQLPPGSTAPLILNYSASTVPILQLALAGEGLNEQ--NLADLGMNQVRIRLVTVPGA 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+  + D + L     +   ++      N         +     +    
Sbjct: 174 AIPYPYGGKQRQIQIDLDTAALHAKGLSAQDVASAFDAQNLINPVGTQKIGATEYTMQLN 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
               D   +                     D+    +     +      +        + 
Sbjct: 234 SAPSDLAALG--------------------DLPIKAVNGGMVYVKDVARVRDGSPPQQNV 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +               IS    I+        ++ G                  G+ +
Sbjct: 274 VHVNGARSVLLSVLKSGAISTPEIIQGIKDKVQEIKPGLPDALTISYLGDQSLFVRGAVN 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  + A L  +++ + +   +  ++   SI L V+ ++A LS LG TL + ++ G+
Sbjct: 334 NVIHEGVLAAALTSLMILLFLGSIRSTIIIATSIPLAVLASIATLSALGETLNIMTLGGL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   +  E I     + + V  ++  G  +  +  F S +   I  V +FF 
Sbjct: 394 ALAVGILVDEATVTIENINYHLEQGKDVETAILDGADQIATPAFVSMLCICIVFVPMFFL 453

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G         A  +  +++ S   + ++V  M  F+++     + D    + F      
Sbjct: 454 EGVARFLFVPMAEAVVFAMVASFILSRTLVPTMAKFLLKPHDPNAHDTPTRNPFMRFQRK 513

Query: 538 IAIQFMRAR 546
               F   R
Sbjct: 514 FEHGFEALR 522



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 83/249 (33%), Gaps = 7/249 (2%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            + A       V+ S +   +    +  +    ++ +  L    G  +             
Sbjct: 799  ITAADATAPQVLGSVINLGRKTSNAVVSQYDIQSMVQILTTTEGRDLGAVAADIQKIVDE 858

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
             +           +   +         + G++ + + + + I + F  W   L  I  L 
Sbjct: 859  AKADLPKGATAVLLGQVRTMNSAYSGMLFGLLGAIVLIYLLIVVNFQSWTDPLVIIMALP 918

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              +   +      G   ++ A+   +  +G +  + V+V    R+  +L          +
Sbjct: 919  AALAGIIWMLFTTGTTLSVPALTGAIMCMGVATANAVLVVSFARE--RLAEHGDPIVAAL 976

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
            +      +   + T++A  I + PMA+    GG         +  G+V A ++++F+   
Sbjct: 977  ESGYVR-IRPVLMTALAMIIGMAPMALGLGEGGEQNAPLGRAVIGGLVFATAATLFVVPL 1035

Query: 819  ILLFIYDWR 827
            +   ++  +
Sbjct: 1036 VFSLMHRRK 1044



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/202 (12%), Positives = 77/202 (38%), Gaps = 7/202 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 ++ +K  + + + +S + +  +        +I +G++   ++++ +L+++    
Sbjct: 299 QGIKDKVQEIKPGLPDALTISYLGDQSLFVRGAVNNVIHEGVLAAALTSLMILLFLG--- 355

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                +   T++ L +  ++   +  G   N+  +  +   +G  V++  V  + +    
Sbjct: 356 SIRSTIIIATSIPLAVLASIATLSALGETLNIMTLGGLALAVGILVDEATVTIENIN--- 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                       I    ++    +  + +   I  +PM    G     F +PMA  +V A
Sbjct: 413 YHLEQGKDVETAILDGADQIATPAFVSMLCICIVFVPMFFLEGVARFLF-VPMAEAVVFA 471

Query: 809 ASSSIFIAAPILLFIYDWRAKN 830
             +S  ++  ++  +  +  K 
Sbjct: 472 MVASFILSRTLVPTMAKFLLKP 493


>gi|330446501|ref|ZP_08310153.1| acrB/AcrD/AcrF family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490692|dbj|GAA04650.1| acrB/AcrD/AcrF family protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 1032

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 73/629 (11%), Positives = 166/629 (26%), Gaps = 53/629 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++  +  +L   I  IGL         +  +  FP                     +   
Sbjct: 9   KHPVFASVLSIAIILIGLFS-----FQKLAIQYFPEHNTPKA-------------TVTAS 50

Query: 62  EDDFVNGFLQMYSDE----LRSFLKKEGIGVFSMRQIQNKITLSFADS-RFKENI--ADK 114
            D     F+            + L+   I      Q +  + + F D     E     +K
Sbjct: 51  IDGASADFMSRNVATHLINAATGLESVDIMTTDCTQGKCTLNVKFDDGISDVEYANLMNK 110

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   ++ +         K  +   +  + S       +++    + E    I +Q   Q 
Sbjct: 111 LRSSIEAIADFPPSMVDKPTVTDDSADKSSASNIITFVNKGTMSSQEMYDYIGQQLKPQF 170

Query: 175 GISESTIQR-LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
                              +    +P+R+  L    A +                     
Sbjct: 171 RHISGVGAVYGPYGGAAKAVRVWLNPNRMMALNVKAADVVTTLSAY-------------- 216

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                +      ++     +                  +   + G     +   D     
Sbjct: 217 -----SSSFTVGQIVGEARNFQINPVTQVTSVKDIQNLVIRVDDGNIIRIKDIADVKMGE 271

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            ++      +                +              ++          +      
Sbjct: 272 NSLTPSKLKVNGETAMSLQVLPLKSENPVDVAARVKTEIEKMQQHLPDGLEMKMVYNQAD 331

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S      T      LV +++ + +   +   +   +I + +I   A++S LG ++ 
Sbjct: 332 FIQESIDQGFHTLLEAVVLVSVIVVLFLGSLRIASIPIITIPVCIIGVFAVMSFLGFSIN 391

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + +I  I+L IGL VD  I+V E       + ++   +   G +     +    +T    
Sbjct: 392 VLTILAIILAIGLVVDDAIVVVENCYRYIEEGETPLNAAIKGSNEIIFPVIAMTMTLAAV 451

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDI 525
            + +    G      R FA T+  S++IS   A+++   M  ++      + K   +ID 
Sbjct: 452 YLPIGLMSGMTADLFRQFAFTLAASVIISGLVALTLSPMMSAYLIKPVSQQPKWFAAIDK 511

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       ++  F R    G     L ++  + +     +    +  G I     A
Sbjct: 512 QLHKLSDSYSKQLSKWFDRKALMGGMALALIALSGVAVWSMPQVLLPTEDTGFIDGSAEA 571

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGE 614
              V       +   L       ++    
Sbjct: 572 PTGVGRRYHIKHNSELNSVMEDNKDIAAN 600



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 102/290 (35%), Gaps = 10/290 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       +T+ +   ++ K      ++    V     ++   S  +   + 
Sbjct: 730  TFLGSLKAANLQADDGYTYPIRVQVNRKDLGNFDIIDKLYVASESGQNIPLSEFVSIKAV 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
             +    K ++ +   +   ++        V+  I E +P     +       + +EL+  
Sbjct: 790  TSESNFKTYMGQNSAEITATLMPGYTAGDVRNYIDENIPELLDDSQSYAYDGVVKELMDS 849

Query: 669  ---GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                    +++ I + + +  +F+ +   L  + T+ L I   +    +FG   N+ +  
Sbjct: 850  QDGTQTLFLMALIFIYLILAAQFESFVDPLIILLTVPLCIVGAVLTLWVFGQSLNIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +      K      +  +    S    L   + TS+   +  L
Sbjct: 910  GLLTLVGLVTKHGILLVEFANDQRK---HGKTAIEAAIHSARSRLRPILMTSLTMILGAL 966

Query: 785  PM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+    G   +   +  + +  G+      S+F+     + +   R K+A
Sbjct: 967  PLAFASGPGSLGRVNIGLVLVGGLTAGTFFSLFLVPVAYVGMSKLREKDA 1016



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 86/243 (35%), Gaps = 8/243 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-TRVLEMV 638
            + V     + +  +            S    +GE    +++     ++       ++  
Sbjct: 250 VIRVDDGNIIRIKDIADVKMGENSLTPSKLKVNGETAMSLQVLPLKSENPVDVAARVKTE 309

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAI 697
            +K+ + +P               +E I +G   ++ + + + + + +       A   I
Sbjct: 310 IEKMQQHLPDGLEMKMVYNQADFIQESIDQGFHTLLEAVVLVSVIVVLFLGSLRIASIPI 369

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ + I       +  G   N+  + A++  IG  V+D +VV +      +      + 
Sbjct: 370 ITIPVCIIGVFAVMSFLGFSINVLTILAIILAIGLVVDDAIVVVENC---YRYIEEGETP 426

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +   K  NE +   +  +M      LP+ +  G    +   FA  +A  ++++   ++ 
Sbjct: 427 LNAAIKGSNEIIFPVIAMTMTLAAVYLPIGLMSGMTADLFRQFAFTLAASVIISGLVALT 486

Query: 815 IAA 817
           ++ 
Sbjct: 487 LSP 489


>gi|322434095|ref|YP_004216307.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
 gi|321161822|gb|ADW67527.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
          Length = 1062

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/567 (11%), Positives = 164/567 (28%), Gaps = 40/567 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      ++L  +I       A P  +  +  D FP+                       
Sbjct: 8   LSRPYTFIVLAILILI-----AAPVIILNTPTDIFPAINIPVV---------SVAWQYTG 53

Query: 61  DEDDFVNGFLQMYSDELRSF-LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              + + G L    ++  +  +        +    Q  + +        +    +VT   
Sbjct: 54  LNPEELEGRLTTPYEKALTVLVDNIQHIESTTVNGQVVVKIYLQPGASLDTANAQVTSSA 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q    +L        ++  +   + I+    +   +       +   +      +     
Sbjct: 114 QFELRQLPPGTLPPQIINFSASSVPILQLGLSGAGLSEQI--LNDTGLNFVRPALVTVPG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            +           +    DP +L+    +   +       N ++      +         
Sbjct: 172 AVVPNVYGGKQRSIMVNLDPKKLQAQGLSPQDVLSAMATQNVTQPSGTAKI--------- 222

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                      G+       N  P +   + D+   ++     +     N+        +
Sbjct: 223 -----------GMDEYDVKLNSAPVSIAGLNDLPLKQVNGTTIYVHDVANVSDGSIPQTN 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                               S    +     L   L+    P  +             S 
Sbjct: 272 IVRQDGKRGVLITILKSGSASTLSVVSQIRGLLPQLKLTLPPALVITPISDQSVFVRASV 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   I A L  +++ + +   +  ++   SI L+++ ++ +L L+G T+ + +++G
Sbjct: 332 VGVIREAIIAAILTGLMILLFLGSWRSTIIIAISIPLSILSSIIVLGLIGETINIMTLSG 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   +  E I     +   +  S+  G ++       S +   I    +FF
Sbjct: 392 LALAVGILVDDATVTIENIERYLEEGNELETSIVEGAAQISVPALVSTLCICIVFTPMFF 451

Query: 480 FGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G         A ++  ++L S   + ++V  M +++++     ++        F    
Sbjct: 452 LSGVARYLFVPLAESVVFAMLASYILSRTLVPTMAMYLLKKHDHHAVPSRNPLARFQRGF 511

Query: 537 CIAIQFMRARFWGVGISILFSICSICL 563
               + +RA +  +  S++ S      
Sbjct: 512 ERNFEKLRAGYQNLLNSLIVSRKVFVP 538



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            I G+  + + + + I + F  W      IT L   +   + F  + G   ++ A+   + 
Sbjct: 883  ISGLGFAIVLVYLLIVVNFQSWLDPFIIITALPAALAGIVMFLFITGTTLSVPALMGAIM 942

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             +G +  + ++V    ++    +           +S        + T++A  I ++PMA+
Sbjct: 943  CMGVATANSILVVSFAKE---RFEHHGDALAAALESGATRFRPVMMTALAMIIGMIPMAL 999

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                GG         +  G+  A  +++     +   ++  R 
Sbjct: 1000 GAGEGGEQNAPLGRAVIGGLSAATLATLVFVPSVFALLHGRRK 1042



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 60/159 (37%), Gaps = 4/159 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   +    ++ L I  ++    L G   N+  ++ +   +G
Sbjct: 338 AIIAAILTGLMILLFLGSWRSTIIIAISIPLSILSSIIVLGLIGETINIMTLSGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +    +           I +   +    ++ +++   I   PM    G
Sbjct: 398 ILVDDATVTIENI---ERYLEEGNELETSIVEGAAQISVPALVSTLCICIVFTPMFFLSG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                F +P+A  +V A  +S  ++  ++  +  +  K 
Sbjct: 455 VARYLF-VPLAESVVFAMLASYILSRTLVPTMAMYLLKK 492


>gi|254819014|ref|ZP_05224015.1| MmpL11 protein [Mycobacterium intracellulare ATCC 13950]
          Length = 1018

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 71/523 (13%), Positives = 172/523 (32%), Gaps = 68/523 (13%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL---PSIAGIVLGI 424
               ++LIVL  +        +        V++T+ L+ LL A  T+    +    + GI
Sbjct: 182 WNLPVILIVLLAVFGSLAAAAIPLALGVCTVVVTMGLVYLLSAYTTMSVFVTSTVSMFGI 241

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            LAVD ++ +  R REE R  +    ++D   + +   +  S  T + +   ++     A
Sbjct: 242 ALAVDYSLFILMRFREELRSGRQPREAVDAAMATSGLAVVLSGATVVASLTGIYVINTPA 301

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           ++  A    L++ ++M T+ ++  A +    R    +S  ++   R          +++ 
Sbjct: 302 LKSMATGAILAVAVAMLTSTTLTPAALATFGRAAAKRSGFLHWSRRPESTQSRFWNRWIG 361

Query: 545 ARFWGVGISILFSICSICLLFTHGLNY---------------------------GIDFKG 577
                  +S L +   + ++     +                            G    G
Sbjct: 362 WVMRRPWMSALAASLVLLVMAAPAASMVLGNSLLRQFDSSHEIRAGVGAAAQALGPGALG 421

Query: 578 GIQLGVLANR----------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
            I++ +               V     R       +     Q  +   + L+        
Sbjct: 422 PIRVLINFPEGGAASPEHSHTVGAVRQRMTQAPNIVSVSPPQYAEDNGSALLSAVLSVDP 481

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYI 684
              + R      +     V        ++ GP    +     +     +++  +A++ ++
Sbjct: 482 EDMRARETVGWMRAELPKVQQLGTARVDVGGPTALIKDFDDQVSATEPLVLGFVALIAFV 541

Query: 685 WIR---FKWYFALGAITTLILDITKT---------------LGFFALFGIEFNLTAVAAV 726
            +       + AL  +   +L +                  LGF  +  I+  +  +  +
Sbjct: 542 MLLVSVHSVFLALKGVLMTLLSVAAAYGSLVMVFQWGWLKDLGFAQISSIDSTVPPL-VL 600

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G S++ ++ +  R+R+    +  S + RD +   +  T  R++ ++    I+V   
Sbjct: 601 AMTFGLSMDYEIFLLTRIRE---RFLHSGNTRDAVAYGV-STSARTITSAALIMIAVFVG 656

Query: 787 AVW-GGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
             + G  ++    +  A  I V      + +   ++     W 
Sbjct: 657 FAFAGMPLVAEIGVACAVAIAVDATVVRLVMVPALMAMFAQWN 699



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 81/283 (28%), Gaps = 14/283 (4%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S+              +N  +     +   V     +     R              +  
Sbjct: 67  SLALVAAPRADATYQDMNEAVAQLRRLTAEVPGTSEIPNPTQRPPQPDRPYVLSVRLDSR 126

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
              +   +L+ + G    Q       + ++  I   +                 R  +  
Sbjct: 127 NTSDVAKKLRTKVGIKGDQPGQTANGRVRLYVIGQGALSAAAAANTKHDIAAAERWNLPV 186

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL--- 729
           ++I  +A+            A   +   +  +  T+G   L    +   +V    T+   
Sbjct: 187 ILIVLLAVFG------SLAAAAIPLALGVCTVVVTMGLVYLLSA-YTTMSVFVTSTVSMF 239

Query: 730 -IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            I  +V+  + +  R R+ ++   +    R+ +D ++  +    V +      S+  + V
Sbjct: 240 GIALAVDYSLFILMRFREELR---SGRQPREAVDAAMATSGLAVVLSGATVVASLTGIYV 296

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                + S A      + VA  +S  +    L       AK +
Sbjct: 297 INTPALKSMATGAILAVAVAMLTSTTLTPAALATFGRAAAKRS 339


>gi|170736224|ref|YP_001777484.1| CzcA family heavy metal efflux protein [Burkholderia cenocepacia
           MC0-3]
 gi|169818412|gb|ACA92994.1| heavy metal efflux pump, CzcA family [Burkholderia cenocepacia
           MC0-3]
          Length = 1070

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/601 (10%), Positives = 149/601 (24%), Gaps = 62/601 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L         + +      +  +D  P                   + +      
Sbjct: 13  RWLVMLAIAAVAALGVFS----YQRLPIDAVPDITN-------------VQVQINTSAPG 55

Query: 65  FV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +    + + + L          R   +++T+ F D          V   +Q
Sbjct: 56  YSPLEAEQRITYPVETVMAGLPGLEQTRSISRYGLSQVTVIFKDGTDIYFARQLVNERIQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV------ISHAIEQSMEIIRQRIDQI 174
               KL       +  T+T      + +                A +           Q+
Sbjct: 116 EAKDKLPPGIAPAMGPTSTGLGEIYLWTVEADANARKPDGTRYTAADLRELQDWVVRPQL 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +       + +     +P++L     T A +       N++        R  +
Sbjct: 176 RNVRGVTEVNSIGGYVKEYRVAPNPAKLMSYGLTLADVVRALERNNDNVGAGYIEKRGEQ 235

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                        +I                     +I    +G           +    
Sbjct: 236 YLVRVPGQARTVDDI--------------------ANIVLTNVGGVPVRMKDVGVVDIGR 275

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          I        
Sbjct: 276 ELRTGAATSNGEEVVLGTVFMLMGENSRTVSKAVAAKMEDVNRTLPAGVKAIPVYDRTVL 335

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ VLF+ +   +  L+    I L++++T   +     +  L
Sbjct: 336 VEKAVATVKKNLLEGAVLVIAVLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANL 395

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIF 464
            S+  +  GI   VD  +++ E         QS           F  +      A   + 
Sbjct: 396 MSLGALDFGII--VDGAVVIVENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALI 453

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +  ++  + +F      G      AIT+ +++  +M   ++ + A +   I  +  +
Sbjct: 454 FGQLIIMVVYLPIFALTGVEGKMFHPMAITVVMALAAAMVLTVTFIPAAVALFIGERVEE 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +A    R     +G   +  +                 +G + +
Sbjct: 514 KENRLMGWARRAYEPVLAAFMTRPARVMIGAGAIVLVTLGLATRLGSEFIPSLNEGDLAV 573

Query: 582 G 582
            
Sbjct: 574 S 574



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 82/229 (35%), Gaps = 7/229 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L ++ +     Q    +    V +          + V +  ++   ++   +    + 
Sbjct: 814  AELATIDVAPGPNQISREDGKRRVVVSANVRGRDVGSFVADAREQLQQDVRVPAGYWVSW 873

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  +    +  + V ++   + + +++ F      L   T +   ++  +    L 
Sbjct: 874  GGQFEQLQSASERLKLVVPLALFMVFVLLFVMFNNVKDGLLVFTGIPFALSGGVVSLWLR 933

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  ++TA    + L G +V + +V+   +R    L    +     +       L   + 
Sbjct: 934  GIPLSITAAVGFIALSGVAVLNGLVMISFIR---NLRDEGMPLDAAVHDGALTRLRPVLM 990

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            T++ A +  LPMA     G  V    A  +  GI+ + + ++ +   + 
Sbjct: 991  TALVASLGFLPMAFATGTGAEVQRPLATVVIGGILSSTALTLLVLPVLY 1039



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + +          AL     + L +  T        +  NL ++ A+    G 
Sbjct: 348 LEGAVLVIAVLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS-------VYTSMAAFISVLP 785
            V+  VV+ +   + +    ++       D+   E  G S       ++  +   +  LP
Sbjct: 406 IVDGAVVIVENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALIFGQLIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    AI +   +  A   ++ FI A + LFI +    K  R+
Sbjct: 466 IFALTGVEGKMFHPMAITVVMALAAAMVLTVTFIPAAVALFIGERVEEKENRL 518


>gi|107027026|ref|YP_624537.1| heavy metal efflux pump CzcA [Burkholderia cenocepacia AU 1054]
 gi|116691777|ref|YP_837310.1| CzcA family heavy metal efflux protein [Burkholderia cenocepacia
           HI2424]
 gi|105896400|gb|ABF79564.1| Heavy metal efflux pump CzcA [Burkholderia cenocepacia AU 1054]
 gi|116649777|gb|ABK10417.1| heavy metal efflux pump, CzcA family [Burkholderia cenocepacia
           HI2424]
          Length = 1070

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/601 (10%), Positives = 149/601 (24%), Gaps = 62/601 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L         + +      +  +D  P                   + +      
Sbjct: 13  RWLVMLAIAAVAALGVFS----YQRLPIDAVPDITN-------------VQVQINTSAPG 55

Query: 65  FV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +    + + + L          R   +++T+ F D          V   +Q
Sbjct: 56  YSPLEAEQRITYPVETVMAGLPGLEQTRSISRYGLSQVTVIFKDGTDIYFARQLVNERIQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV------ISHAIEQSMEIIRQRIDQI 174
               KL       +  T+T      + +                A +           Q+
Sbjct: 116 EAKDKLPPGIAPAMGPTSTGLGEIYLWTVEADANARKPDGTRYTAADLRELQDWVVRPQL 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +       + +     +P++L     T A +       N++        R  +
Sbjct: 176 RNVRGVTEVNSIGGYVKEYRVAPNPAKLMSYGLTLADVVRALERNNDNVGAGYIEKRGEQ 235

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                        +I                     +I    +G           +    
Sbjct: 236 YLVRVPGQARTVDDI--------------------ANIVLTNVGGVPVRMKDVGVVDIGR 275

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          I        
Sbjct: 276 ELRTGAATSNGEEVVLGTVFMLMGENSRTVSKAVAAKMEDVNRTLPAGVKAIPVYDRTVL 335

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ VLF+ +   +  L+    I L++++T   +     +  L
Sbjct: 336 VEKAVATVKKNLLEGAVLVIAVLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANL 395

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIF 464
            S+  +  GI   VD  +++ E         QS           F  +      A   + 
Sbjct: 396 MSLGALDFGII--VDGAVVIVENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALI 453

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +  ++  + +F      G      AIT+ +++  +M   ++ + A +   I  +  +
Sbjct: 454 FGQLIIMVVYLPIFALTGVEGKMFHPMAITVVMALAAAMVLTVTFIPAAVALFIGERVEE 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +A    R     +G   +  +                 +G + +
Sbjct: 514 KENRLMGWARRAYEPVLAAFMTRPARVMIGAGAIVLVTLGLATRLGSEFIPSLNEGDLAV 573

Query: 582 G 582
            
Sbjct: 574 S 574



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 82/229 (35%), Gaps = 7/229 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L ++ +     Q    +    V +          + V +  ++   ++   +    + 
Sbjct: 814  AELATIDVAPGPNQISREDGKRRVVVSANVRGRDVGSFVADAREQLQQDVRVPAGYWVSW 873

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  +    +  + V ++   + + +++ F      L   T +   ++  +    L 
Sbjct: 874  GGQFEQLQSASERLKLVVPLALFMVFVLLFVMFNNVKDGLLVFTGIPFALSGGVVSLWLR 933

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  ++TA    + L G +V + +V+   +R    L    +     +       L   + 
Sbjct: 934  GIPLSITAAVGFIALSGVAVLNGLVMISFIR---NLRDEGMPLDAAVHDGALTRLRPVLM 990

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            T++ A +  LPMA     G  V    A  +  GI+ + + ++ +   + 
Sbjct: 991  TALVASLGFLPMAFATGTGAEVQRPLATVVIGGILSSTALTLLVLPVLY 1039



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + +          AL     + L +  T        +  NL ++ A+    G 
Sbjct: 348 LEGAVLVIAVLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS-------VYTSMAAFISVLP 785
            V+  VV+ +   + +    ++       D+   E  G S       ++  +   +  LP
Sbjct: 406 IVDGAVVIVENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALIFGQLIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    AI +   +  A   ++ FI A + LFI +    K  R+
Sbjct: 466 IFALTGVEGKMFHPMAITVVMALAAAMVLTVTFIPAAVALFIGERVEEKENRL 518


>gi|292491728|ref|YP_003527167.1| heavy metal efflux pump, CzcA family [Nitrosococcus halophilus Nc4]
 gi|291580323|gb|ADE14780.1| heavy metal efflux pump, CzcA family [Nitrosococcus halophilus Nc4]
          Length = 1089

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 55/607 (9%), Positives = 150/607 (24%), Gaps = 63/607 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++ +     L  ++   G+         +  +D  P                 +++ +++
Sbjct: 6   LKFSVQQRWLVLLVT-FGVAALGIYNYQRLPIDAVPDI---------------TNIQVQI 49

Query: 61  DEDDF------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114
           + +            +    +     L +        R   +++T+ F D          
Sbjct: 50  NTEAPGYSPLEAEQRITFPLEITLQGLPQLEETRSLSRYGLSQVTVIFEDGTDIYFARQL 109

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS------QNNIDQVISHAIEQSMEIIR 168
           V   +Q     L    +  +    T      + +          +       +       
Sbjct: 110 VNQRIQEAKGSLPPGIEPKMGPIATGLGEIFLWTMEAEPGALQPNGTPYSPTDLRTLQDW 169

Query: 169 QRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMF 228
               Q+       +       + Q      P +L     +   +       N +      
Sbjct: 170 VIKPQLITVPGVTEINSMGGYIKQYHVTPYPKKLIAYGLSFPDLLAALARNNANVGAGYI 229

Query: 229 GVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRD 288
                +        V++  EI  I +               V +  +        E    
Sbjct: 230 EHHGEQYLIRAPGQVQNLEEIRNIIVGTHQGVPVYIKDVAEVVLGKELRTGAATREGEET 289

Query: 289 NIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE 348
            +G    ++ +                    +              +             
Sbjct: 290 VLGTAFLLMGE--------------------NSQTVARAVADRLEEINRTLPEGVEAKTA 329

Query: 349 ERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLL 408
                    + +  +      A LV++VLF+ +   +  L+    I L+++ T+  +   
Sbjct: 330 YDRTTLVDKTIATVRNNLLEGATLVIVVLFLFLGNFRAALITAMVIPLSMLFTITGMVTE 389

Query: 409 GATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF----------CSLDMGFSR 458
             +  L S+  +  GI   VD  +++ E       + Q               +      
Sbjct: 390 KVSANLMSLGALDFGII--VDGAVVIVENSIRHLAEEQQRRGRTLTLAERLEVVFNSSEE 447

Query: 459 AYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
           A   I       ++  + +F      G      A T+  ++L +M  +I+ + A +   +
Sbjct: 448 ARRAILFGQTIIMVVYLPIFTLTGVEGKMFHPMAFTVVSALLGAMLLSITFIPAAVAIFV 507

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
             +  +  +             +              +++  +  +              
Sbjct: 508 SGRITEKENPALRLAKKAYLPALNFALNNKTVVITIAAVIVVLSGLLATRMGTEFVPTLD 567

Query: 576 KGGIQLG 582
           +G I + 
Sbjct: 568 EGDIAVQ 574



 Score = 46.2 bits (107), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 62/165 (37%), Gaps = 13/165 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + +++       +  AL     + L +  T+       +  NL ++ A+    G 
Sbjct: 348 LEGATLVIVVLFLFLGNFRAALITAMVIPLSMLFTITGMVTEKVSANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDR-MR---KNMKLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVLP 785
            V+  VV+ +  +R   +  +    +++  +   ++  S  E     ++      +  LP
Sbjct: 406 IVDGAVVIVENSIRHLAEEQQRRGRTLTLAERLEVVFNSSEEARRAILFGQTIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW 826
           +    G    +    A  +   ++ A   SI FI A + +F+   
Sbjct: 466 IFTLTGVEGKMFHPMAFTVVSALLGAMLLSITFIPAAVAIFVSGR 510


>gi|327440263|dbj|BAK16628.1| cation/multidrug efflux pump [Solibacillus silvestris StLB046]
          Length = 1025

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 83/676 (12%), Positives = 203/676 (30%), Gaps = 42/676 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  +I   G+  +      +  ++  P       I +G         V   
Sbjct: 6   LKNKLAVWLLTIIIVFSGIYSS-----TRMKMESIPDISIPFLIVMG---------VYPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   L +  ++    L+       +     +++ + +      +    ++   L 
Sbjct: 52  ATPEQVMDDLSIPYEKAVESLEDVKAVYSTSSSNVSQVQVEYEYGVDMDEKKRQLEAALD 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +L    ++  ++  +   + ++    +        +E +  + +  + ++   +  
Sbjct: 112 NI--ELPEGAQEPSIMAISMNMMPVIALSVSSSD--EDIVELTSTVEKIILPKLNKIDGV 167

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                + + L ++    D  ++ QL  T   +       + +    ++        DG Q
Sbjct: 168 ASATVTGQHLEEVAFTYDEEKMAQLGLTEESVKQMIQASDLAVSLGLYE-----FEDGEQ 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +  D    +   L        P    PV                    I K   V    
Sbjct: 223 AVAVDGKFKTEEQLKEMLIPVTPSETNPV----------PFVKLGDIAEIEKVGKVQSVS 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
           R      I   I   K Q +   T+  A          ++      +          S  
Sbjct: 273 RTNGKDAIAIQIV--KGQDANTVTVANAVKDLIEEEQEAISGLKIDISLDQGKPIEDSVF 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      + ++++ + +   K  +++  SI ++V + L  L  L  TL + ++  I
Sbjct: 331 TMVEKAVFGGLIAVLIILLFLRDFKSTIISIISIPVSVFMALMALHWLDITLNIMTLGAI 390

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTIFDSNITALIATVVL 477
            + IG  +D +I+V E I       +        +       +  I  S +  +     L
Sbjct: 391 TVAIGRVIDDSIVVVENIYRRMHLKEEKLQGRALIREATIEMFKPIMSSTLVTIAVFAPL 450

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR-FFL 533
            F GG        FA+TM  +++ S+  AI+IV A+   + R K       +       L
Sbjct: 451 VFVGGMVGELFVPFALTMSFALIASLIVAITIVPALSHTLFRKKIYGEKSESQHKEVGKL 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                           +   I   +    L  T  + +        ++  L   P    +
Sbjct: 511 AVTYRNFLEKSLNHKWISSIIAIVLLVGSLALTPLIGFSFMGSQEEKVMYLTYTPGTGEL 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +   L +++  +      +      + +  +P    A           +   +    +++
Sbjct: 571 MEETLTNIEEVEKELLKREDIDILQLSVNTEPSTDAAAMMTGGGAGGGLIYAIFDPDMED 630

Query: 654 TEIVGPKISRELIRKG 669
                 ++   +   G
Sbjct: 631 FPKAKKEVEDYIFNIG 646



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 92/236 (38%), Gaps = 3/236 (1%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            + +E +       +    +   +  ++ Q  ++V     ++ + ++  E +    I  +
Sbjct: 259 IAEIEKVGKVQSVSRTNGKDAIAIQIVKGQDANTVTVANAVKDLIEEEQEAISGLKIDIS 318

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
              G  I   +       V    IA+LI +     +   + +I ++ + +   L      
Sbjct: 319 LDQGKPIEDSVFTMVEKAVFGGLIAVLIILLFLRDFKSTIISIISIPVSVFMALMALHWL 378

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            I  N+  + A+   IG  ++D +VV + + + M L    +  R LI ++  E     + 
Sbjct: 379 DITLNIMTLGAITVAIGRVIDDSIVVVENIYRRMHLKEEKLQGRALIREATIEMFKPIMS 438

Query: 775 TSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +++       P+   G   G +   FA+ M+F ++ +   +I I   +   ++  +
Sbjct: 439 STLVTIAVFAPLVFVGGMVGELFVPFALTMSFALIASLIVAITIVPALSHTLFRKK 494



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 87/230 (37%), Gaps = 10/230 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              L          ++   ++  L+ G         +  +   +     D          
Sbjct: 766 DELLETPIQTATGQTMTIGDIVELEEGTTLNSLSRQKGEYFATVSATITDKDISKATSAA 825

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGA 696
            +K     +P         V   ++    + G+  +I +   +   + + F +       
Sbjct: 826 DEKIADLELPKGVTTGVGGVAADMAETFTQLGV-AMIAAIAIVYFILVVTFGEGLAPFAI 884

Query: 697 ITTLILDITKT-LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
           + +L   +  + +G FA  G+  +++ +  +L LIG  V + +V+ DR+   +++    +
Sbjct: 885 LFSLPFTVIGSWIGLFA-TGLTISVSVMMGLLMLIGIVVTNAIVLVDRI---IRMEHEGM 940

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--WGGSVI-GSFAIPMA 802
           + R+ I ++    L   + T++A   ++LPMA    GG +I    A+ + 
Sbjct: 941 NMREAILEAGATRLRPILMTAIATIGAMLPMAFGGAGGGLISQDLAVTVI 990


>gi|257067492|ref|YP_003153747.1| cation/multidrug efflux pump [Brachybacterium faecium DSM 4810]
 gi|256558310|gb|ACU84157.1| cation/multidrug efflux pump [Brachybacterium faecium DSM 4810]
          Length = 1121

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 63/516 (12%), Positives = 148/516 (28%), Gaps = 30/516 (5%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
           +  + CI + I     +     +  PS             +            + V   +
Sbjct: 14  FIALVCIAVSIIGVFIMTTMRQELIPSVSLP---------QIQVMTTAPGSSSEQVQDRI 64

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               ++  S L+       +     + +T+           +++V   L G+   L  D 
Sbjct: 65  TGPVEQSLSGLENVEGTSSTSEAGVSIVTVELTYGTDVARSSNQVDAALSGIEDDLPEDA 124

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
              ++   T    ++VLS ++       +      +      ++                
Sbjct: 125 DPQVMAGGTSDLPAVVLSVSSDLDPSELSSRLESSVT----PELERVSGVSSVAVIGAPE 180

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
             +    D   L +   T   +S        S  G       + D D    +V  +   S
Sbjct: 181 EIVRITPDEDALAENGLTEDDISTALDANGLSLPGGS-----VVDGDRTLDVVLGQSLDS 235

Query: 251 GIHLNGATAN---------FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              L                        +  + ++  A          + +         
Sbjct: 236 IESLEQIMLMPAEDGGQEEPQQGPDGQPLPGTQEQQPAEPVTLAEVATVERTTQDATSIS 295

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                     + +     +     E    + A   +         V          S   
Sbjct: 296 RTNGRESLVLMVTATVDGNVVDVSEGVEGVLAESLSSVGGNAEADVVFDQAPFIEESILA 355

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +     + V+ + +   +  +V   SI  ++++    + + G TL + ++A + 
Sbjct: 356 LAEEGLLGLLFAVGVILLFLRRVRPTVVTAISIPTSLLIAFIGMYVTGYTLNMLTLAALT 415

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           + IG  VD +I+V E I       ++   ++          I  S +  ++  + +    
Sbjct: 416 ISIGRVVDDSIVVIENITRHLAYGKTRRRAILDAVGEVAGAITASTLATVVVFLPIAVVA 475

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              G   R FA+T+G+++L S+  A++IV  +  + 
Sbjct: 476 GMAGELFRPFALTVGIAMLSSLLVALTIVPVLAYWF 511



 Score = 85.1 bits (208), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 88/239 (36%), Gaps = 9/239 (3%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +    ++S  +   +             +       E     I        ++ +     
Sbjct: 814  ASVEEELSRPSIATQDGLETVTVSLTPATEDVGAASEAANDAIESADLPEGVEASLGGTA 873

Query: 660  KISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF 718
                E   +  + ++ + + + ++ +WI       L  + ++    T  LG   +  +  
Sbjct: 874  ADIDETFGQLGIAMLAAILLVYVLLVWIFKSLVQPLILLVSIPFAATGALGLLIITRVPL 933

Query: 719  NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
             L ++  +L L+G  V + +V+ D + +  +     +   + +     + L   + T+ A
Sbjct: 934  GLPSMIGLLMLVGIVVTNAIVLIDLVNQYRR---KGMGLDEALHLGAAKRLRPILMTAAA 990

Query: 779  AFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               +++PMA+     GG +    A+ +  G+V +   ++ I  P+L  + +   +  R+
Sbjct: 991  TIFALVPMALGLTGNGGFIAQPLAVVVIGGLVSSTLLTLVIV-PVLYRLAEGPGERKRL 1048



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/211 (13%), Positives = 76/211 (36%), Gaps = 6/211 (2%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +V              V  ++ + ++ +   +         P I   ++     G++   
Sbjct: 306 MVTATVDGNVVDVSEGVEGVLAESLSSVGGNAEADVVFDQAPFIEESILALAEEGLLGLL 365

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            A+ + +    +    +    ++   +        + G   N+  +AA+   IG  V+D 
Sbjct: 366 FAVGVILLFLRRVRPTVVTAISIPTSLLIAFIGMYVTGYTLNMLTLAALTISIGRVVDDS 425

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
           +VV + +    +      + R  I  ++ E  G    +++A  +  LP+AV     G + 
Sbjct: 426 IVVIENI---TRHLAYGKTRRRAILDAVGEVAGAITASTLATVVVFLPIAVVAGMAGELF 482

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             FA+ +   ++ +   ++ I   +  +   
Sbjct: 483 RPFALTVGIAMLSSLLVALTIVPVLAYWFLK 513



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 61/533 (11%), Positives = 138/533 (25%), Gaps = 53/533 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R    + I  S++  +G     P      + D   +       SL   L  GS   LE  
Sbjct: 560  RPRRLVTIAVSVLVLVGTAFLYPLVNISFLGDTGQNIA-----SLSQTLPAGSS--LEQS 612

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN------KITLSFADSRFKENIADKV 115
                         ++    L        ++           +  +SF+ +   +   + +
Sbjct: 613  SQKATES------EDALLELDGVQTVQTTIGGGGMGFGGGGENEVSFSITTDPDADQEAL 666

Query: 116  TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               +      L         +   +       +  +I        ++         +   
Sbjct: 667  LDEMVATLEDLPD----PGTIEAADIASPTGSNSVDILITGPTTEDRQAANDAILAELDP 722

Query: 176  ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            + E   +     +                  G T +     V           G   L D
Sbjct: 723  LPEGVSEVTSDLQADQPTAVVTVDREAAAQAGLTEEAVIGMVAQQMY--PGAIGSITLDD 780

Query: 236  SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            ++ + Y+   +   +   L                        +    +           
Sbjct: 781  NELDIYVAGGESVDTYAQLQDLELMGTIPLQDVASVEEELSRPSIATQDG---------- 830

Query: 296  VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                              +     +       +      + +  LP  +           
Sbjct: 831  --------------LETVTVSLTPATEDVGAASEAANDAIESADLPEGVEASLGGTAADI 876

Query: 356  LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
              +             LV ++L  I       L+   SI       L LL +    L LP
Sbjct: 877  DETFGQLGIAMLAAILLVYVLLVWIFKSLVQPLILLVSIPFAATGALGLLIITRVPLGLP 936

Query: 416  SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            S+ G+++ +G+ V + I++ + + +  RK   +  +L +G ++    I  +    + A V
Sbjct: 937  SMIGLLMLVGIVVTNAIVLIDLVNQYRRKGMGLDEALHLGAAKRLRPILMTAAATIFALV 996

Query: 476  VLFFF----GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
             +       GG   +  A+ +   ++ S    + IV  +        + K + 
Sbjct: 997  PMALGLTGNGGFIAQPLAVVVIGGLVSSTLLTLVIVPVLYRLAEGPGERKRLK 1049


>gi|148271948|ref|YP_001221509.1| RND family mulitdrug efflux protein [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829878|emb|CAN00802.1| putative integral membrane efflux protein, RND family [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 1089

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/517 (11%), Positives = 140/517 (27%), Gaps = 40/517 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN   + ++  +I   G +              FP                        
Sbjct: 9   LRNRALIALITIVIGVFGGIALTTLKQELIPSVSFPQLAVVTA--------------YPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V+  +    +     +        + R   + I+ SF           K+   + 
Sbjct: 55  ASPAVVDTDVSTPIERAIQAVPGLESSTATSRTDSSVISASFTYGTDLATAEQKIDQAIN 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L       ++  + +    I ++  +               +       G+ +++
Sbjct: 115 RIRTTLPDGIDPVVIAGSIDDLPVIQIAVTSDLSPQDLTAALERSTLADIRKLAGVRDAS 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           +      R++I      DP+ ++    T   +        +               DG  
Sbjct: 175 LLGTVGQRVVITP----DPAEVQAAGLTNQAIRDALDANGSLLPAGSV------TEDGTT 224

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V+    +                            G R         +          
Sbjct: 225 LSVQSGTRLGSTQ-------------DLASLPLLGAAGGRALTIGDVATVELGQDPTTGI 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          +     +          L   L           V          S S
Sbjct: 272 SRVDGQPSLTIAVTKTPAGNTVDVSHLVTQLLPQLSEDLGSDTKFTVVFDQAPFIEQSIS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +     ++V+ + ++  +  +V   SI  +V++T   +   G TL + ++  +
Sbjct: 332 SLTTEGLLGLVFAVLVILVFLMSIRSTIVTAISIPASVLITFIAMLASGYTLNIITLGAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + +G  VD +I+V E I+           ++          +  S  T +   + +   
Sbjct: 392 TIAVGRVVDDSIVVIENIKRHLSFTPDRLDAIRAAVREVAGAVTASTATTVAVFLPIALV 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           G   G   R FA+T+ +++  S+F +++IV  +  + 
Sbjct: 452 GDITGELFRPFALTVTIALAASLFVSLTIVPVLAYWF 488



 Score = 85.5 bits (209), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 28/197 (14%), Positives = 78/197 (39%), Gaps = 9/197 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
           T++L  + + +      + + +      +    L  +G++G++ + + +L+++       
Sbjct: 300 TQLLPQLSEDLGSDTKFTVVFDQAPFIEQSISSLTTEGLLGLVFAVLVILVFLM---SIR 356

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +    ++   +  T       G   N+  + A+   +G  V+D +VV + ++   +  
Sbjct: 357 STIVTAISIPASVLITFIAMLASGYTLNIITLGALTIAVGRVVDDSIVVIENIK---RHL 413

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVA 808
           + +    D I  ++ E  G    ++       LP+A+ G   G +   FA+ +   +  +
Sbjct: 414 SFTPDRLDAIRAAVREVAGAVTASTATTVAVFLPIALVGDITGELFRPFALTVTIALAAS 473

Query: 809 ASSSIFIAAPILLFIYD 825
              S+ I   +  +   
Sbjct: 474 LFVSLTIVPVLAYWFLR 490



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 84/254 (33%), Gaps = 12/254 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                    ++    +     +G     +   R +      + +E +              
Sbjct: 789  VIDEKTLSIYIQDPDAAQSLQGLRDFRIPTARGLVPLSDLATVEVVDGPATVTTTGGFRS 848

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +           A + V + V          +++            +L     + V+ 
Sbjct: 849  ATVSATPGSDDVGFASSEVSQAVAGVQLPAGAQASLGGVASQQSDAFGQL----GLAVLA 904

Query: 676  SAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + I +   F+     L  + ++    T  +    + GI   + ++  +L L+G  V
Sbjct: 905  AILIVYIIMVATFRSLIQPLVLLVSVPFAATGAVLLQVVTGIPLGVASIIGLLMLVGIVV 964

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----G 790
             + +V+ D + +     T  +  R+ I +     L   + T++A   ++LP+AV     G
Sbjct: 965  TNAIVLIDLVNQYR---TRGMGLREAILQGAGRRLRPILMTALATIFALLPLAVGLTGHG 1021

Query: 791  GSVIGSFAIPMAFG 804
            G +    AI +  G
Sbjct: 1022 GFISQPLAIVVIGG 1035



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/525 (9%), Positives = 140/525 (26%), Gaps = 54/525 (10%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            ++++   ++L  ++   G +  +P+     + D   + +                  L  
Sbjct: 571  LKHSAVTLVLAILV-LGGTVALIPSMKTNFLGDSGQNTLT-------------VSQELPS 616

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT--------LSFADSRFKENIA 112
            D             ++    ++       S+      +T        ++FA +   +   
Sbjct: 617  DTSLEAQDTAATKVEQALIGVQGVDTVQTSIGSDSTSLTSAFGGGGGITFALTTDADADQ 676

Query: 113  DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
            D +   ++               V+          S   +    + A +           
Sbjct: 677  DAIRERVRTAV----DGLTDVGDVSLAAASGGFSSSDIEVQITANDADDLKTSADAILAA 732

Query: 173  QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
               I                +    D ++      +   +            G +     
Sbjct: 733  VKDIPSIEQATSNLSETQPYIAVTVDRAKAAAAGLSEQAV------------GGIVTASR 780

Query: 233  LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
            L  + G   + E  +      +     +                 G     ++    +  
Sbjct: 781  LPAAVGQVVIDEKTL-----SIYIQDPDAAQSLQGLRDFRIPTARGLVPLSDLATVEVVD 835

Query: 293  PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
              A V       +  ++    S     + +   +    +     A +    +   +    
Sbjct: 836  GPATVTTTGGFRSATVSATPGSDDVGFASSEVSQAVAGVQLPAGAQASLGGVASQQSD-- 893

Query: 353  GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                 +             +V I++          LV   S+       + L  + G  L
Sbjct: 894  -----AFGQLGLAVLAAILIVYIIMVATFRSLIQPLVLLVSVPFAATGAVLLQVVTGIPL 948

Query: 413  TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
             + SI G+++ +G+ V + I++ + + +   +   +  ++  G  R    I  + +  + 
Sbjct: 949  GVASIIGLLMLVGIVVTNAIVLIDLVNQYRTRGMGLREAILQGAGRRLRPILMTALATIF 1008

Query: 473  ATVVLFFF----GGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            A + L       GG   +  AI +   +L S    + ++ ++   
Sbjct: 1009 ALLPLAVGLTGHGGFISQPLAIVVIGGLLSSTVLTLLVLPSLYSL 1053


>gi|126172416|ref|YP_001048565.1| CzcA family heavy metal efflux protein [Shewanella baltica OS155]
 gi|125995621|gb|ABN59696.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS155]
          Length = 1049

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 73/593 (12%), Positives = 168/593 (28%), Gaps = 45/593 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           ++I+  MI   G+       L ++ LD  P       I                     V
Sbjct: 16  VLIIAIMITVWGV-----QELRKTPLDALPDLSDVQVI---------IKTPYPGQAPKLV 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +          +              + + + F D         +V  +L  ++S+L
Sbjct: 62  EEQVTYPLSTAMLAVPGAKTVRGYSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQISSRL 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             + + +L    +                     +           ++       +    
Sbjct: 122 PQNVQPSLGPDASGVGWVYEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVSEVATV 180

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +        +P ++       A +       N+   G +  +         +   +  
Sbjct: 181 GGMEQTYQIVLEPDKMAIYKLDIATIKQAIDKANSEAGGSVIEMAEAEYMVRAKGYRQTL 240

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +   I L   + +    T K V  +       R   E+  +                  
Sbjct: 241 EDFREIPLGITSPSGTGLTLKDVATVRKGPASRRGIAELDGE-----------------G 283

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   I   +   +   TI+        L+AG       I         L S        
Sbjct: 284 EVVGGIVVMRYGENALATIDAVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNLFSKV 343

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI + IG 
Sbjct: 344 VEEMLVVGLVCLLFLLHARSTLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIGA 403

Query: 427 AVDSNILVNERIREENRKN----------QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            VD  I++ E + +               +  +  +          +F S I   ++ V 
Sbjct: 404 VVDCAIVMIENLHKHLEHFKADHDREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFVP 463

Query: 477 LF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   ++  + F +I++V  +M + IR K               
Sbjct: 464 VFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSERSNPISRFLIA 523

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           I        ++     + ++++    +   +   G  +    + G  L +   
Sbjct: 524 IYQPSLKLVLKFPKVTLMLALIALASAWYPMTRMGSEFMPALEEGDLLYMPTA 576



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 82/243 (33%), Gaps = 13/243 (5%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +    +        E   L+   +   +  +    +   K  +   + +    +    G 
Sbjct: 802  ADIEINDGAPMLKSENGRLISWVFIDIEGTSIGEYIATAKTALDAELVVPPRYSYSFAGQ 861

Query: 660  KISRELIR---KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                + +    K ++ + ++ I +L+ +        ++  + +L   +  +     L   
Sbjct: 862  YEYMQRVDAKLKQVIPMALAVIFILLMMTFGSTIQASII-MLSLPFALVGSTWLLYLLDY 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLG 770
              ++     ++ L G +    VV+        + R+    Y +    ++ + +     + 
Sbjct: 921  NISVAVAVGMIALAGVAAEFGVVMLVYLNNAIKHRQEKDNYHSVNDLKEALIEGAVMRIR 980

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                T    F  +LP+      G  V+   A PM  G+V A   S+F+   + L IY  +
Sbjct: 981  PKAMTVATIFFGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLIYSRK 1040

Query: 828  AKN 830
             K 
Sbjct: 1041 LKK 1043



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +  K    L  K +  
Sbjct: 287 GGIVVMRYGENALATIDAVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNMKL----YTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K+++     +      ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDCAIVMIENLHKHLEHFKADHDREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+          F   A    F +  AA  SI +   ++ +    +  + R
Sbjct: 463 PVFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSER 513


>gi|322832663|ref|YP_004212690.1| heavy metal efflux pump, CzcA family [Rahnella sp. Y9602]
 gi|321167864|gb|ADW73563.1| heavy metal efflux pump, CzcA family [Rahnella sp. Y9602]
          Length = 1043

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/562 (11%), Positives = 142/562 (25%), Gaps = 48/562 (8%)

Query: 17  IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDE 76
            G+       L ++ LD  P       I           +         +   +      
Sbjct: 26  WGIWS-----LQKAPLDALPDLSDVQVI---------VRVSYPGKAPQIIEDQVTYPLTT 71

Query: 77  LRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLV 136
               +                + + F D         +V  +L  V S L    K +L  
Sbjct: 72  TLLSVPGAKTVRGFSMFGDAYVYVLFDDGTDPYWARSRVLEYLSQVQSSLPAGAKTSLGP 131

Query: 137 TTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196
             T                     +            +    +  +      ++ Q    
Sbjct: 132 DATGVGWIYEY-ALIDKTGKHSLEQLRALQDWTLRYDLKTVPNVSEVASIGGMVRQYQVV 190

Query: 197 QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
            DP R+R    T  ++       N    G +  +            ++   +        
Sbjct: 191 ADPQRMRARGVTHQQLVTALQNANQESSGSLLEMGEAEYMVRTSGYLKSLED-------- 242

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316
                          +     G              P        +     +   +   +
Sbjct: 243 -----------FNNVVVTVNSGIPVLLADVATVRTGPELRRGVAELNGEGEVAGGVIVMR 291

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
           +  +   T++        L          +           +             +V +V
Sbjct: 292 SGKNALETLKAVKERLHALARTLPAGVEIVPVYDRQPLIENAVETLSHKLLEEFAVVAVV 351

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
             + + + +  LVA  ++ L ++    ++   G +  + S+ GI + IG  VD+ I++ E
Sbjct: 352 CALFLFHFRSALVAIITLPLGILGAFIVMHYQGVSANIMSLGGIAIAIGAMVDAAIVMIE 411

Query: 437 RIR------EENRKNQSVFCS-LDMGFSRAYSTIFDSNITALIATVVLFFF-------GG 482
            +         +   Q    +       RA + +  +   +L+   + F          G
Sbjct: 412 NMHKVLEQWRHDHPGQQPASADYWKVSERAATEVGPALFCSLLIITLSFIPVFSLEAQEG 471

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   ++ +S    I++V  +M + IR K                   +    
Sbjct: 472 RMFSPLAFTKTYAMAVSAGLGITLVPVLMGYFIRGKIPDENASPINRWLIAAYQPVLSAV 531

Query: 543 MRARFWGVGISILFSICSICLL 564
           ++     +  S LF + S+  L
Sbjct: 532 LKRPKTTLLFSGLFLLVSLYPL 553



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 81/245 (33%), Gaps = 10/245 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L S+ + D               +         ++ V +M +    ++     +  + 
Sbjct: 798  SALASVNVTDGPPMLKSENARLSDWIYVDLRGRDLKSAVEDMQQAVSQQVTLPEGVTVSW 857

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +       K  + + ++ + + + +++ F     AL  + TL   +T  +    L 
Sbjct: 858  SGQFEYLERATAKLKIVLPVTLLIIFVLLYVTFSSVRDALLIMATLPFALTGGVWLLYLL 917

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT------SISFRDLIDKSINET 768
                ++ A    + L G +    V++   + + ++               D I       
Sbjct: 918  SFNLSVAAAVGFIALAGVAAEFGVIMVLYLNQAVQRQQKAGGDMSEAELCDAIHHGAVLR 977

Query: 769  LGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +     T       +LP+   GG    V+   A PM  G+V A   S+ +   + L ++ 
Sbjct: 978  VRPKAMTVATIMAGLLPIMWGGGTGSEVMQRIAAPMIGGMVSAPLLSMLVIPAVYLLMHR 1037

Query: 826  WRAKN 830
             R K 
Sbjct: 1038 RRNKK 1042



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 19/180 (10%)

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
            + L    +V V+ +           F +  AL AI TL L I          G+  N+ 
Sbjct: 339 HKLLEEFAVVAVVCAL--------FLFHFRSALVAIITLPLGILGAFIVMHYQGVSANIM 390

Query: 722 AVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYTTS-----ISFRDLIDKSINETLGRSV 773
           ++  +   IG  V+  +V+     ++ +  +            +  + +++  E      
Sbjct: 391 SLGGIAIAIGAMVDAAIVMIENMHKVLEQWRHDHPGQQPASADYWKVSERAATEVGPALF 450

Query: 774 YTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            + +   +S +P+          F   A    + + V+A   I +   ++ +    +  +
Sbjct: 451 CSLLIITLSFIPVFSLEAQEGRMFSPLAFTKTYAMAVSAGLGITLVPVLMGYFIRGKIPD 510


>gi|229035074|ref|ZP_04189021.1| Swarming motility protein swrC [Bacillus cereus AH1271]
 gi|228728259|gb|EEL79288.1| Swarming motility protein swrC [Bacillus cereus AH1271]
          Length = 1038

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 69/684 (10%), Positives = 191/684 (27%), Gaps = 35/684 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKISKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKTDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +          ++   M       +      K +
Sbjct: 231 GNITTIKALKELKIPAVPSSPSGQGSQNAGAGAQTPQMNPAAMNGIPTVTLDEIAEIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKDLEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP- 527
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                L      I         +  SI   +    L     +          ++ +    
Sbjct: 530 EKPSKLANWYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPAEEEKMIITTY- 588

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +    ++  +  +I   + ++F   K+         G++             +     
Sbjct: 589 --NPEPGQTLEDVEKIATKAEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDND 646

Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671
               +  +    K  +++  KG  
Sbjct: 647 TKNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 93/243 (38%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              + ++ +   +   +    E   +  ++    ++V     ++   K + +      I 
Sbjct: 282 DEIAEIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKDLEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGTEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|220933491|ref|YP_002512390.1| acriflavin resistance protein [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994801|gb|ACL71403.1| acriflavin resistance protein [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1028

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 75/675 (11%), Positives = 183/675 (27%), Gaps = 43/675 (6%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
            +   +G L+       Q  +  FP   P                         V+  L 
Sbjct: 14  VIALLVGALVLGVQARFQLPVQLFPDTDPPTVT---------VITEYPGMAATDVDADLT 64

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
              +E  + L        + +   + + + F         A  V   +  V   L     
Sbjct: 65  RLLEEEFASLDGVTRISGTSQAGLSVVRVEFDYGMLATLAAVDVQNAVGRVRRDLPGTIG 124

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
           +  ++  +  +  IV      D +     +          +++                 
Sbjct: 125 EPRVLEFSTADKPIVTVALRSDTL--DLADVREVADNAVRERLERVPGVAAVDIIGAHRR 182

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
           +L    +P R   L     ++                        D    +        G
Sbjct: 183 ELHVALEPDRAESLGVDLEQVVAAL--------------------DAWNLVAPGGRVRHG 222

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
              +    +    + +    I      A +        +      + +            
Sbjct: 223 ALESVIRFDAPIDSAETAERIVLRSDAAGQVRLGDVATVSLAPGEIRNAYRFDGLPAIAV 282

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
               +   +          +   LRA    +++ + ++ +V  +     + +    +   
Sbjct: 283 QVLRRDDANTVEVAARVREVLEALRAEHPALEIVVADDDSVFTERVITDMTRTVL-VAVA 341

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           L + V+ + +   +   +   SI    + T AL+   G  L + +++ ++L IGL VD  
Sbjct: 342 LTMAVVLVFLADLRQAAIIALSIPAAFLATFALMQAAGLDLNMVTMSALILAIGLLVDDG 401

Query: 432 ILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRG 487
           I+V E I       + S   ++  G     S     ++T L   V L F G   G   R 
Sbjct: 402 IVVLENIHRHLELPDTSARSAVVNGVGEILSAKLGGSLTTLGVLVPLMFMGSFIGELFRP 461

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-------SIDINPLSRFFLIPDCIAI 540
            A+T+  ++  S   A+++V  + ++ +R  + +        +     +        + +
Sbjct: 462 LAMTLAFALASSFVMAVTLVPLLGVWWLRPGRPQAPNRLVVWLGRAGGAVRVNYLAGLGL 521

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
              R     V   +L +     L             G  ++ V       L      +  
Sbjct: 522 ALRRPVTILVTSVLLLAASLGMLRMVGSEMMPRFDSGSFRVVVDLVPGATLEETVRAVAR 581

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            +   +  ++                        +   +  +  +       +   +  +
Sbjct: 582 AEDVLVGREHTLTVSTRAGHEAGARAMGDRGAMSVNQAEITVNLVPRTEREADQWQIMDQ 641

Query: 661 ISRELIRKGIVGVII 675
           + + L +   V + +
Sbjct: 642 VRQVLEQTPGVMLGV 656



 Score = 84.4 bits (206), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/248 (16%), Positives = 97/248 (39%), Gaps = 16/248 (6%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ V      ++               L R      +  A+ R +    +     + + 
Sbjct: 257 DVATVSLAPGEIRNAYRFDGLPAIAVQVLRRDDANTVEVAARVREVLEALRAEHPALEIV 316

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD--ITKT 707
              +  +   ++  ++ R  +V V ++   +L+++    +      AI  L +      T
Sbjct: 317 VADDDSVFTERVITDMTRTVLVAVALTMAVVLVFLADLRQ-----AAIIALSIPAAFLAT 371

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                  G++ N+  ++A++  IG  V+D +VV + + ++++L  T  S R  +   + E
Sbjct: 372 FALMQAAGLDLNMVTMSALILAIGLLVDDGIVVLENIHRHLELPDT--SARSAVVNGVGE 429

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            L   +  S+     ++P+   G   G +    A+ +AF +     SS  +A  ++  + 
Sbjct: 430 ILSAKLGGSLTTLGVLVPLMFMGSFIGELFRPLAMTLAFALA----SSFVMAVTLVPLLG 485

Query: 825 DWRAKNAR 832
            W  +  R
Sbjct: 486 VWWLRPGR 493



 Score = 42.0 bits (96), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/140 (13%), Positives = 56/140 (40%), Gaps = 8/140 (5%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  ++ + L          + G   ++ A+  ++ LIG  VN+ +++ D  R   
Sbjct: 883  SFAHPLTVMSAIPLQFIGVTAALLVAGKYISMPALLGIILLIGIVVNNSIILLDLTR--- 939

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG- 804
            +     +     + ++++  +   + T+++    + P+A+    G       A  +  G 
Sbjct: 940  RRMAEGLEIHAAVTEAVDTRMRPIMMTALSTVAGMFPLALEMAVGAERFSPIA-TVIIGG 998

Query: 805  IVVAASSSIFIAAPILLFIY 824
            I+ A   ++ +   + + + 
Sbjct: 999  ILAATVLTLVVIPALFVVME 1018


>gi|154248511|ref|YP_001419469.1| CzcA family heavy metal efflux protein [Xanthobacter autotrophicus
           Py2]
 gi|154162596|gb|ABS69812.1| heavy metal efflux pump, CzcA family [Xanthobacter autotrophicus
           Py2]
          Length = 1055

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 72/591 (12%), Positives = 169/591 (28%), Gaps = 42/591 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +++  +     GL       L    LD  P       I          +      
Sbjct: 11  RNLVLVLVGTAFAVAAGLYA-----LRTLPLDALPDLSDVQVI---------VYTDYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLATAMLTVPKSKVVRGFSFFGASFVYVIFEDGTDPYWARSRVLEYLNA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L      +L    T        +       ++        +IR        +E   
Sbjct: 117 AARRLPTGVTPSLGPDATGVGWVYQYAVVAKQMTLAELRSLQDWVIRF---AAAKAEGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP+RLR L     ++       N    G    +         + 
Sbjct: 174 EVASVGGFVKQYQIVVDPNRLRALGIPLERVRSAVAASNADVGGRTVELSEFEFMVRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                      +   + G     +        P        
Sbjct: 234 YLRGVADIE-------------------NVVLKTDRGVPLRVKDVARVEIGPDERRGITE 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    IE      A +          +      G    +   
Sbjct: 275 LDGEGEVASGIVLQRFGANALAVIENVKARLAEIAPSLPKGAEIVPVYDRSGLIERAIET 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            KGT    + +V +V  + +L+ +  LVA   + + +++  A +  +G    + S+ GI 
Sbjct: 335 LKGTLVEESLIVALVCIVFLLHLRSALVAILMLPVGILMAFAAMKAIGLGSNIMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + +G  +D+ I++ E   +      K++     L    S     +F S +   ++ + +F
Sbjct: 395 IAVGAMIDAAIVMIENAHKHLERAPKDRPRVEILIAAASEVGPALFFSLLVITVSFLPIF 454

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   ++++V A+M+  +R + +             + 
Sbjct: 455 TLEAQEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVVFVRGRIVPEHRNPINRALIFVY 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++A+   + ++++    ++      G  +      G  + +   
Sbjct: 515 RPVIRGVLKAKTLTILLAVVVLGVTLWPARQIGSEFMPSLDEGTLMYMPTT 565



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 63/159 (39%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + ++  + +R     AL AI  L + I          G+  N+ ++  +   +G
Sbjct: 343 SLIVALVCIVFLLHLR----SALVAILMLPVGILMAFAAMKAIGLGSNIMSLGGIAIAVG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             ++  +V+ +   K+++         +++  + +E      ++ +   +S LP+     
Sbjct: 399 AMIDAAIVMIENAHKHLERAPKDRPRVEILIAAASEVGPALFFSLLVITVSFLPIFTLEA 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVVFVRGR 497



 Score = 45.1 bits (104), Expect = 0.057,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 54/156 (34%), Gaps = 14/156 (8%)

Query: 685  WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY--- 741
            ++ F+       I  L L      G + ++ + FN +     + L G +    VV+    
Sbjct: 878  YLNFR-ALTETLIVMLSLPFALVGGIWLMWWLNFNFSVAVGFIALAGVAAETGVVMLIYL 936

Query: 742  -DRMRKNMKLYT------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
               MR+            T       I     E +   + T +A    +LP+      G 
Sbjct: 937  DQAMRELKAERAAEGRPFTRSDLNRAIMLGAVERVRPKMMTVVAIMAGLLPILWSTGTGS 996

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V+   A+PM  G+V +   ++ +   +   I   R
Sbjct: 997  EVMQRIAVPMIGGMVSSTVLTLVVIPAVYALIKGRR 1032


>gi|160876754|ref|YP_001556070.1| acriflavin resistance protein [Shewanella baltica OS195]
 gi|160862276|gb|ABX50810.1| acriflavin resistance protein [Shewanella baltica OS195]
 gi|315268954|gb|ADT95807.1| acriflavin resistance protein [Shewanella baltica OS678]
          Length = 1063

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 76/674 (11%), Positives = 175/674 (25%), Gaps = 45/674 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+    +L   +   GL            +       P   ++L         +     
Sbjct: 13  RNSVAANLLMWALLVGGLFS---------TVLINKEVFPSFELNL-----LNISVAYPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   + +  +E    +           +    IT+   D    + + D+  L L  
Sbjct: 59  APQEIEEGINIKIEEAIQDINGIKKVTSVASEGVGSITVEVEDGYEVQTVLDEAKLRLDA 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S   V+ +K  +      E +++      D  +    E +    +   D +    +  
Sbjct: 119 I-STFPVNIEKPNIYQIK-PENNVIWVSVYGDMTLHDMKELA----KSVRDDLTQLPAVT 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++  E    +LR+   T  +++      +    G           DG+  
Sbjct: 173 RAKVTGVRDYEIAIEVSEDKLREYGLTFTQVALAVQNSSFDLPGGSIRA-----QDGDIL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L       +G                    +        R        I       L+  
Sbjct: 228 LRTKGQAYTGDD--------------FANIVVTTRPDGSRVMLPQVATIKDDFEERLEYT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +               RA                   G  ++
Sbjct: 274 RFNGKPAAIIEVTSVDDQNALDIAAQVKQYVEDRRATLPANAQLDTWGDMTHYLKGRLNM 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL--LGATLTLPSIAG 419
                   A LV I+L M +   K        + +  + T+ ++ L     T+ + ++  
Sbjct: 334 MMSNMFYGALLVFIILAMFL-DLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFA 392

Query: 420 IVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +L +G+ VD  I++ E    E  R   SV   +      A    F    T      +L 
Sbjct: 393 FILVLGIVVDDAIVIGESAYTEVERHGHSVDNVIRGAQKVAMPATFGVLTTIAAFIPMLM 452

Query: 479 FFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   +  +   + + L +  S+  +  I+ A +  +   K           +      
Sbjct: 453 VSGPMGIIWKSIGMVVILCLAFSLVESKFILPAHLAHMKFKKPGAPRGFFGRLKANFNDR 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R +               +    L+  +   G ++     + P D   V+ 
Sbjct: 513 VQHFIHHSYRNFLERCIKQRYNVVAAFIGVLILSIALVASGKVRWVFFPDIPSDFIQVQL 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++     + + +     +  L ++  +         V        +        + T+ 
Sbjct: 573 EMDEGSSEENTLKVVQSIEEALYKMNDKMEQDNGYQVVKHSFINMSSRTSAFIFAELTKG 632

Query: 657 VGPKISRELIRKGI 670
              ++    I    
Sbjct: 633 EDREVDGVTIAAAW 646



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 88/256 (34%), Gaps = 10/256 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       +               S    DG++   +              V E+ K  +
Sbjct: 778  IRTPTGTSVPFSTVAQIEKGESYASITRVDGKRAITITANANKNIVEPSKVVQEIQKDYL 837

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             ++        T + G  +  +    G++ G   +   +   + I  K  ++   I   +
Sbjct: 838  PQLQAKYPKIQTALDGGSLDEQNAMVGLMQGFFFALFTIYALMAIPLK-SYSQPLIIMSV 896

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +        F     G+  ++ ++  ++ L G  VND +++ D +    +      S R 
Sbjct: 897  IPFGIIGALFGHLIQGLAMSVLSLCGIVALAGVVVNDSLILVDFVN---RAREQGQSVRQ 953

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                S        + TS+  F+ ++P+ +       ++   A  +AFGI+ +   ++ + 
Sbjct: 954  AAVDSGCYRFRAIILTSLTTFVGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILV 1013

Query: 817  APILLFIYDWRAKNAR 832
              + + + D    ++R
Sbjct: 1014 PLLYIILDDVSRSSSR 1029



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 89/280 (31%), Gaps = 8/280 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI      I L        G DF   +         V L  V +  +  +      +   
Sbjct: 218 SIRAQDGDILLRTKGQAYTGDDFANIVVTTRPDGSRVMLPQVATIKDDFEERLEYTRFNG 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +        +++     ++   +     +P +   +T        +  +   +  
Sbjct: 278 KPAAIIEVTSVDDQNALDIAAQVKQYVEDRRATLPANAQLDTWGDMTHYLKGRLNMMMSN 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
           +   A+ + I + +      A   +  L +    T+    L  F +  N+  + A + ++
Sbjct: 338 MFYGALLVFIILAMFLDLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFAFILVL 397

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ +      ++     S  ++I  +    +  +    +    + +PM +  
Sbjct: 398 GIVVDDAIVIGESA--YTEVERHGHSVDNVIRGAQKVAMPATFG-VLTTIAAFIPMLMVS 454

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G +     S  + +   +  +   S FI    L  +   +
Sbjct: 455 GPMGIIWKSIGMVVILCLAFSLVESKFILPAHLAHMKFKK 494


>gi|53713381|ref|YP_099373.1| CzcA family cation efflux system protein [Bacteroides fragilis
           YCH46]
 gi|52216246|dbj|BAD48839.1| CzcA family cation efflux system protein [Bacteroides fragilis
           YCH46]
          Length = 1037

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 75/685 (10%), Positives = 180/685 (26%), Gaps = 51/685 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  +V++ +++  I       N      +D FP       +           ++ E   
Sbjct: 11  NNRIVVLIGALLLIIAGTYTAVN----MEVDVFPDLNAPTVV-----------VMTEAKG 55

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 56  MAPEEVERLVTFPVETAVNGATDVRRVRSSSTTGFSIVWVEFNWGTDIYRARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  +  K  L   +     +++     D V     +           ++  +   
Sbjct: 116 VLGDALPSNVGKPTLGPQSSILGELLIIGLTSDSV--SLQDLRTMADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +     DP +++       ++       N +  G +             
Sbjct: 174 AQVTVLGGDIKEYQILLDPGKMKHYGIGLNEVIDVVKDMNQNAAGGVLYEFGNEFIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                   +    +           +   V                    G     +   
Sbjct: 234 LSTNKVEALRKAVIKNVDEVPITLENIAEVK------------------TGAKAPKMGLA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  I   +       + + T +    L  + +     +K+     R       S  
Sbjct: 276 SERGKAGILLTVTKQPNTSTLDLTGKLDKSLEDLQKVLPKDVKVTTDIFRQSRFINNSID 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +       V+IVL + ++  +  +++  +I L+VI+ +  L  LG T+   S+ GI
Sbjct: 336 NVQKSLYEGGIFVIIVLLLFLMNIRTTVISLITIPLSVIVAILTLKALGLTINTMSLGGI 395

Query: 421 VLGIGLAVDSNILVNERIREE--------NRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +           + ++V   +          I +S +  + 
Sbjct: 396 AIAIGSLVDDAIVDVENVFKRLRENRQKPKEEQKNVLTVVFEASKEVRMPILNSTLIIVA 455

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDIN 526
           + V LFF     G  +    IT  +S+  S   A+++   +  +++   K          
Sbjct: 456 SFVPLFFLSGMEGRMLAPLGITFVISLFASTVVALTLTPVLCSYLLNKPKNNGEEHDPYL 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +       +     I  +  +  + +            +G   + +   
Sbjct: 516 VRKLKSGYGMALRWTLCHKKVVLGAIGAILIVSLVMMASFGRSFLPPFNEGSFTVSISTL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   +S            R +         T  +E          
Sbjct: 576 PGISLEESDKIGRMAEDILLSVPEVQTVGRKTGRAELDEHALGVNTSEIEAPFILDKRSK 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIV 671
                +  E +       +     +
Sbjct: 636 DEVLTEIREKIKVIPGVNIEIGAPI 660



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 98/257 (38%), Gaps = 16/257 (6%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-----TRVLEMVKKKI 642
           P+ L  +       +   +   +  G+   L+ +  QP  S         + LE ++K +
Sbjct: 254 PITLENIAEVKTGAKAPKMGLASERGKAGILLTVTKQPNTSTLDLTGKLDKSLEDLQKVL 313

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
            + V ++T    +      S + ++K +         +++ +         + ++ T+ L
Sbjct: 314 PKDVKVTTDIFRQSRFINNSIDNVQKSLY--EGGIFVIIVLLLFLMNIRTTVISLITIPL 371

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKL-YTTSISF 757
            +   +      G+  N  ++  +   IG  V+D +V    V+ R+R+N +       + 
Sbjct: 372 SVIVAILTLKALGLTINTMSLGGIAIAIGSLVDDAIVDVENVFKRLRENRQKPKEEQKNV 431

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA- 816
             ++ ++  E     + +++    S +P+    G      A P+    V++  +S  +A 
Sbjct: 432 LTVVFEASKEVRMPILNSTLIIVASFVPLFFLSGMEGRMLA-PLGITFVISLFASTVVAL 490

Query: 817 --APILLFIYDWRAKNA 831
              P+L      + KN 
Sbjct: 491 TLTPVLCSYLLNKPKNN 507



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 74/157 (47%), Gaps = 10/157 (6%)

Query: 681  LIYIWIRFKWYFAL-GAITTLILDITKTLGFFALFGIE--FNLTAVAAVLTLIGYSVNDK 737
            +I++ +  ++  A+   +  L L +    G F+++      ++ A+   ++L G +  + 
Sbjct: 875  VIFLLLFKEFKSAIQSLVILLNLPLALIGGVFSIYFTSGILSIPAIIGFISLFGIATRNG 934

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ DR      L  + +S  D I     + L   + T++++ ++++P+A+     G+ I
Sbjct: 935  MLLIDRYN---SLRASGMSVNDSILHGSLDRLNPILMTALSSGLALIPLALGGELPGNEI 991

Query: 795  GS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             S  A  +  G++ +   + FI   I L+I   + K 
Sbjct: 992  QSPMAKVILGGLLSSTILNGFIIPIIYLYISCKQEKK 1028


>gi|167764743|ref|ZP_02436864.1| hypothetical protein BACSTE_03133 [Bacteroides stercoris ATCC
           43183]
 gi|167697412|gb|EDS13991.1| hypothetical protein BACSTE_03133 [Bacteroides stercoris ATCC
           43183]
          Length = 1048

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 76/620 (12%), Positives = 181/620 (29%), Gaps = 24/620 (3%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWETDVYLARQIVSEKLAVV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L  +  K  L   +     +++     D      ++           ++  +    Q
Sbjct: 118 SESLPSNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +   + DP R+R    T  ++        N          +  +      +
Sbjct: 176 VAVLGGDIKEYQIQLDPERMRHYGVTLTEVMN-VTREMNLNANGGVLYEYGNEYIVRGVI 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D+V      L  A       + +P    +          ++    IG  L  +     
Sbjct: 235 STDRV----EQLAKAVVKLQDGSVQPATSNAPYSASPILLEDIADVRIGAKLPKLGTASE 290

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +   +    A  +   T +    L  + +     +K++    R       S    
Sbjct: 291 RGKPAVLLTVTKQPATSTLELTDKLETSLKDLQKNLPPDVKVSTDIFRQSRFIESSIGNV 350

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +       V+IVLF+ +   +  +++  ++ L++I +L  L  +G T+   S+ G+ +
Sbjct: 351 QKSLFEGGIFVVIVLFLFLANVRTTVISLVTLPLSLIASLLALHYMGFTINTMSLGGMAI 410

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +  R+N+    +        +          I +S +  +++ 
Sbjct: 411 AIGSLVDDAIVDVENVYKRLRENRMKPEAERLPILEVVFNASKEVRMPILNSTLIIVVSF 470

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LFF     G  +    I   +++  S   A+++   +  +++  +K+K    +     
Sbjct: 471 VPLFFLSGMEGRMLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKIKDEKHSTGDSP 530

Query: 532 FLIPDCIA------IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                               +    G   LF++   C             +G   + + +
Sbjct: 531 VARKMKEWYGAALAFVLGHKKSVLGGTIGLFAVALACFFTLGRSFLPPFNEGSFTINISS 590

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              + L          +   +S            R +            +E   +     
Sbjct: 591 LPGISLEESDKMGHRAEELLLSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRS 650

Query: 646 VPLSTIQNTEIVGPKISREL 665
                    E +G  +   +
Sbjct: 651 RSELVADVREKLGTIVGANV 670



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 79/221 (35%), Gaps = 12/221 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +T + ++ K    ++   + I             + +    G I   I +
Sbjct: 306 TSTLELTDKLETSLKDLQKNLPPDVKVSTDIFRQSRFIESSIGNVQKSLFEGGIFVVIVL 365

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++         + ++ TL L +  +L      G   N  ++  +   IG  V+D +V 
Sbjct: 366 FLFLA---NVRTTVISLVTLPLSLIASLLALHYMGFTINTMSLGGMAIAIGSLVDDAIVD 422

Query: 740 ---VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
              VY R+R+N MK     +   +++  +  E     + +++   +S +P+    G    
Sbjct: 423 VENVYKRLRENRMKPEAERLPILEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGR 482

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI-LLFIYDWRAKNAR 832
           ++    I     +  +   ++ +   +    +   + K+ +
Sbjct: 483 MLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKIKDEK 523



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 83/221 (37%), Gaps = 11/221 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N   ++      +    R +    ++  +             G +   E      + +  
Sbjct: 827  NVKRKIVISANVADRDLRSVVNDIQERVDASIKLPEGYHIEYGGQFESEQAASRTLALTS 886

Query: 676  SAIAMLIYIWIRFKWYFAL--GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
                ++I++ +  ++  ++   AI  + L +    G FAL     E ++ A+   ++L G
Sbjct: 887  FMSIVVIFLLLYHEFR-SVKESAIILINLPLALIGGVFALLVTTGEVSIPAIIGFISLFG 945

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + +++      N           D + +   + L   + T++++ ++++P+A+ G 
Sbjct: 946  IATRNGMLLISHY--NHLQQEEGYGVYDSVIRGSLDRLNPILMTALSSALALIPLALSGD 1003

Query: 792  ----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +    A  +  G++ +   + FI   + L ++  + 
Sbjct: 1004 LPGNEIQSPMAKVILGGLLTSTFLNGFIIPIVYLMMHGKKE 1044


>gi|254518557|ref|ZP_05130613.1| preprotein translocase subunit SecD [Clostridium sp. 7_2_43FAA]
 gi|226912306|gb|EEH97507.1| preprotein translocase subunit SecD [Clostridium sp. 7_2_43FAA]
          Length = 421

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 34/165 (20%), Positives = 77/165 (46%), Gaps = 4/165 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G ++  E     I   +I    + I++ + ++    + A   L L IT  L  F   G+ 
Sbjct: 239 GAQLGAEAFPNAIKAGVIGISLIFIFMILWYRVP-GILASIALTLYITLVLLVFVEMGVA 297

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +AA+L  +G +V+  +++++R+R+ +   T  +S +  +       +   V ++ 
Sbjct: 298 LTLPGIAALLLTVGMAVDANILIFERIREEL---TRGVSVKSAVKSGFENAMSSIVDSNA 354

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             FI+ L +   G   +  FA+ +  GIV++  +++ +   ++ F
Sbjct: 355 TTFIAALILYFIGSGTVKGFAVTLMIGIVLSLITALVVTKILMNF 399



 Score =  109 bits (272), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 108/314 (34%), Positives = 181/314 (57%), Gaps = 1/314 (0%)

Query: 217 VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDE 276
           V    +           +  +      +  V ++G  +  ATA  D  + +PVV +  +E
Sbjct: 104 VDIPGAYNSSEIVDGLSKTGNLEFKDPKGNVVLTGKDVKEATAILDDTS-RPVVSLELNE 162

Query: 277 MGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLR 336
            G  +F E T +NIGK +++ +D  V++ PV+  AI  GKA I+G  +++ A  L+ ++ 
Sbjct: 163 EGQAKFAEATANNIGKTISISMDNEVVSQPVVQSAITDGKAVINGMSSMDEATKLSGIIS 222

Query: 337 AGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFL 396
           +G+LP+ +  V  +NVGA LG+++      A V G+ LI +FMI+ Y   G++A  ++ L
Sbjct: 223 SGALPVTVKAVSVKNVGAQLGAEAFPNAIKAGVIGISLIFIFMILWYRVPGILASIALTL 282

Query: 397 NVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF 456
            + L L +   +G  LTLP IA ++L +G+AVD+NIL+ ERIREE  +  SV  ++  GF
Sbjct: 283 YITLVLLVFVEMGVALTLPGIAALLLTVGMAVDANILIFERIREELTRGVSVKSAVKSGF 342

Query: 457 SRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
             A S+I DSN T  IA ++L+F G G V+GFA+T+ + I++S+ TA+ + + +M F + 
Sbjct: 343 ENAMSSIVDSNATTFIAALILYFIGSGTVKGFAVTLMIGIVLSLITALVVTKILMNFAVD 402

Query: 517 YKKMKSIDINPLSR 530
              +KS+    + R
Sbjct: 403 IGLLKSLWQFRVKR 416



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 1/122 (0%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  ++C + +            +  +        I+ GLDL+GG  +++E+ EDD  +  
Sbjct: 13  ILFILCIVAIFSLAFTGFKGFEIAGWEFKSFNKAITKGLDLQGGVSVLMEIQEDDVPSDV 72

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            Q     L   + K G+    + +    +I +    +     I D ++            
Sbjct: 73  RQRTKQLLELRVNKIGVSETIVTEEGEKRIRVDIPGAYNSSEIVDGLSKTGNLEFKDPKG 132

Query: 129 DP 130
           + 
Sbjct: 133 NV 134


>gi|88658157|ref|YP_507373.1| AcrB/AcrD/AcrF family protein [Ehrlichia chaffeensis str. Arkansas]
 gi|88599614|gb|ABD45083.1| AcrB/AcrD/AcrF family protein [Ehrlichia chaffeensis str. Arkansas]
          Length = 1032

 Score =  124 bits (310), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/567 (10%), Positives = 155/567 (27%), Gaps = 42/567 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++ N   + L  +I   G              ++ P                  H  L+ 
Sbjct: 9   LQRNRVSIFLLMVILIFGCYS-----YFYIPKEKNPEIKKPIL---------SIHTTLQG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V  FL    ++    +K         +     + L F+         + V   + 
Sbjct: 55  MSSEDVEKFLVYPIEQEIKSVKGISRITSMAKNGYANVILEFSAGFNHREALENVRSKVD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + +KL  +    ++         ++      D       +    +      ++    + 
Sbjct: 115 VIRAKLPQEATFPIINEENFSLFPVLSIALVSDLPNRTLFK----VASDLQSRLESLPNI 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +     P  +         +    +  N             + +    
Sbjct: 171 ESVKIIGNSKDIIEINISPGVINSYNLQMQDVIMAVLNNNQFLNIGNLDSTVGKYTLHLS 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            ++++  +I                    ++I     G           I        + 
Sbjct: 231 GILKNIEDI--------------------MNIPVKTDGYSVVTVGDIATIKPIYQDNKEF 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          S +   +   TI     L   L+         I  +          +
Sbjct: 271 VRVNNQPCLVLEISKQTGKNIIETISQVKELMNNLKNILPNNLSVIYLQDESEEISNVLN 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +  I    +++++ M+ +  K  L+   SI  + +  + ++ LLG TL +  +  +
Sbjct: 331 ELQNSILISVL-LVVIIMMVFMGTKTALLVAVSIPGSFLFGIIIMYLLGYTLNIVILFSL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++ +G+ VD  I+V E    +     +   +        +  +  + +T L+  + L F+
Sbjct: 390 IMAVGMLVDDAIVVTEYADRKMIGGLNKMEAFKQAAHDMFWPVASATLTKLVVYIPLLFW 449

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G  ++   I +  ++  S   A+  +  +   I          +  +         
Sbjct: 450 PGTTGEFMKYIPIALITTLSGSWIMALIFIPVLGSLIGMPSVTDKKSVAEIIAINTGDFV 509

Query: 538 IAIQFMRARFWGVGISILFSICSICLL 564
              +F R     +   +      +C++
Sbjct: 510 HLGRFTRGYSRILNNVLNHPKKFVCVI 536



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/207 (11%), Positives = 73/207 (35%), Gaps = 7/207 (3%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
            L   +    + +     ++ +   +  I+P +          +    ++ +    ++IS
Sbjct: 280 VLEISKQTGKNIIETISQVKELMNNLKNILPNNLSVIYLQDESEEISNVLNELQNSILIS 339

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            + ++I + +      AL    ++       +    L G   N+  + +++  +G  V+D
Sbjct: 340 VLLVVIIMMVFMGTKTALLVAVSIPGSFLFGIIIMYLLGYTLNIVILFSLIMAVGMLVDD 399

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSV 793
            +VV +      +     ++  +   ++ ++        ++   +  +P+  W    G  
Sbjct: 400 AIVVTE---YADRKMIGGLNKMEAFKQAAHDMFWPVASATLTKLVVYIPLLFWPGTTGEF 456

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPIL 820
           +    I +    +  +     I  P+L
Sbjct: 457 MKYIPIAL-ITTLSGSWIMALIFIPVL 482



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 19/166 (11%)

Query: 673  VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIG 731
            VII  + ML+ I      Y  L  +T + L  T     F +    F++      ++ L G
Sbjct: 862  VIIVVLIMLVLITEFNSIYNTLIIMTAIFLSTTCIFFGFFITSHVFSVVMGGVGIIVLAG 921

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
              VN+ +++ D    NM         ++ I ++    +   + T +   I ++PM +   
Sbjct: 922  VIVNNNILLLDAFYINMNTICNK---KEAIVRAALSRVRPILLTVVTGIIGLVPMMLRVS 978

Query: 789  ------------WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                            +    +  +A G+ +A   ++F    +L+ 
Sbjct: 979  FDFINRQVIYNSPSSQLWFELSYTIAIGLCLATVITLFFTPALLMI 1024


>gi|24376071|ref|NP_720114.1| CzcA family heavy metal efflux protein [Shewanella oneidensis MR-1]
 gi|24351090|gb|AAN57558.1|AE015891_9 heavy metal efflux pump, CzcA family [Shewanella oneidensis MR-1]
          Length = 1045

 Score =  124 bits (310), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 77/598 (12%), Positives = 168/598 (28%), Gaps = 45/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++I+  MI   G+       L ++ LD  P       I                 
Sbjct: 11  RQRLMVLIIAMMITLWGV-----QELRKTPLDALPDLSDVQVI---------IKTTYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APKLVEEQVTYPLSTAMLAVPGAKTVRGFSMFGDSYVYVIFDDGTDIYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S+L    + +L    +                     +           ++       
Sbjct: 117 IGSRLPAGVQPSLGPDASGVGWVFEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +        +P ++       A +       N+   G +  +         + 
Sbjct: 176 EVATVGGMEQTYQVVLEPDKMAIYKLDIASIKDAIEKSNSEAGGSVVEMAEAEYMVRAKG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +   I L  A+ +    T K V  I       R   E+  +             
Sbjct: 236 YRQTLEDFREIPLGIASPSGTSLTLKDVATIRKGPAARRGIAELDGE------------- 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +   TI+        L AG       +         L S   
Sbjct: 283 ----GEVVGGIIVMRYGENALSTIDAVKAKLEELSAGLPEGVEIVPTYDRSNLILKSVDN 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + +L+ +  LVA  ++ L++++   +++ LG    + S+ GI 
Sbjct: 339 LFNKVVEEMLVVGLVCLLFLLHARSTLVAIVTLPLSILIAFIVMNKLGVNANIMSLGGIA 398

Query: 422 LGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDSNITAL 471
           + IG  VD  I++ E + +   +  S           +  +    +     +F S +   
Sbjct: 399 IAIGAVVDGAIVMIENLHKHLEQFHSEHQREPNVKEHWRIVTQASTEVGPALFFSLLIIT 458

Query: 472 IATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ V +F      G      A T   ++  S   AI++V  +M + IR K          
Sbjct: 459 LSFVPVFALEAQEGRLFAPLAYTKSFAMAASAILAITLVPVLMGYFIRGKIPSENKNPIS 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                +        +      + +++L  + +       G  +  + + G  L +   
Sbjct: 519 RVLIALYKPALNLVLNFPKITIALALLALVSAWYPFTRMGSEFMPELEEGDLLYMPTA 576



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/245 (13%), Positives = 81/245 (33%), Gaps = 10/245 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             NL  ++I + +          +  +  +   +     +    +    E+        + 
Sbjct: 799  RNLAEIEITEGAPMLASENGRLISWVFIEIEGTSIGEYITSAKQTLSAELNVPPRYSYSF 858

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI-TTLILDITKTLGFFALF 714
                +  + +  K    + ++   + I + + F        I  +L   +  +     L 
Sbjct: 859  AGQYEYMQRVDAKLKQVIPMALGVIFILLMLTFGSTMQASMIMLSLPFALVGSTWLLYLL 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINET 768
                ++     ++ L G +    V++        + R++   Y +    ++ + +     
Sbjct: 919  DYNISVAVAVGMIALAGVAAEFGVIMLVYLNNAIKHRQDNNTYHSVEDLKEALIEGAVMR 978

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +     T    F  +LP+      G  V+   A PM  G+V A   S+F+   + L +Y 
Sbjct: 979  IRPKAMTVATIFFGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLVYS 1038

Query: 826  WRAKN 830
             + K 
Sbjct: 1039 RKLKQ 1043



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/167 (14%), Positives = 62/167 (37%), Gaps = 12/167 (7%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L AI TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAIVTLPLSILIAFIVMNKLGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMR---KNMKLYTTSISFRD----LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + +    +                 ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEQFHSEHQREPNVKEHWRIVTQASTEVGPALFFSLLIITLSFV 462

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           P+          FA P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 463 PVFALEAQEGRLFA-PLAYTKSFAMAASAILAITLVPVLMGYFIRGK 508


>gi|331003214|ref|ZP_08326721.1| hypothetical protein HMPREF0491_01583 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412867|gb|EGG92247.1| hypothetical protein HMPREF0491_01583 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 1013

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 89/680 (13%), Positives = 194/680 (28%), Gaps = 44/680 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    L++    +   GL   +      + ++  P       +            +   
Sbjct: 9   LKRPVTLILAVITVLFFGLRSVM-----NAPMELNPEMSLPMMV---------VSTIYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                ++  +    +   S L        S  +  + + L +      +     +   L 
Sbjct: 55  ASPADIDELVSKKIESEVSTLTGIKTVSVSSMENASTMLLQYEFGTNMDKAYINLKKALD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S L  D ++  ++       S +          +        +    + +     S 
Sbjct: 115 SVKSSLPKDAEEPNIIEIDMNAQSDIQLSIAGGTDGN----LQDYVNTNIVPEFKKMSSV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S      +  E  P +L Q     + +       + S             S    
Sbjct: 171 GSVSISGGQSSYIRIELIPEKLAQYNLAMSDIGNIISSADFSTPVGKVDYGRQSLSVSIG 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              +D   +  I +   T                              N+   L      
Sbjct: 231 ADYKDINRLKNIVIPLKT--------------------GDVIHLSDVANVYDALEEKNSL 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  +     + +   +     +    +   L+A +           +      S S
Sbjct: 271 SRYNGEEVVSLAITKQQSSTSVEVSKQVNKVIEELKANN-KDLTITTIFDSSKYIKESIS 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   L +IVLF+     K  L+   SI ++V++ L L+   G +L L S+  +
Sbjct: 330 DVFKTLIMAVILSMIVLFIFFGDIKASLIVGSSIPISVMVALTLMRAAGFSLNLISMGSL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
           VLGIG+ VD++I+V E     ++ +++ F +   G     ++I  S IT  +  + L   
Sbjct: 390 VLGIGMIVDASIVVLESCFR-SKNDKNFFDAAVEGTGIVINSITGSIITTCVVFLPLAML 448

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G        T+   ++ S+F+AI IV  + +F    +K  ++    L +       
Sbjct: 449 KGLSGQLFSQLGYTIVFCMVSSLFSAIMIVPLLYLFFHPVEKTDTLANRVLLKVQDGYRN 508

Query: 538 I-AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                  +         IL  I  I       +       G I + V     +++  V  
Sbjct: 509 TVKKIIPKKITVVGISVILLVISFILAGNVGMVLMPESDDGQIAISVSVAPGLNIEDVDR 568

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             + ++    +  + +  +      +     +          K+       +   Q    
Sbjct: 569 IAKQIEDFVAADPDVENYQMTFGNSEMFSEKTGISITAYLKKKRSRKTKNVIQEWQPVLT 628

Query: 657 VGPKISRELIRKGIVGVIIS 676
             P  S  +  +      +S
Sbjct: 629 KIPDTSISVKNQSNSSSGVS 648



 Score = 68.9 bits (166), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 97/251 (38%), Gaps = 9/251 (3%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            I + +     + LS V +  ++L+  +   +    E   L   + Q   SV  ++ +  
Sbjct: 241 NIVIPLKTGDVIHLSDVANVYDALEEKNSLSRYNGEEVVSLAITKQQSSTSVEVSKQVNK 300

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGA 696
           V +++       TI         I   +       +I++ I  +I ++I F     +L  
Sbjct: 301 VIEELKANNKDLTITTIFDSSKYIKESI-SDVFKTLIMAVILSMIVLFIFFGDIKASLIV 359

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +++ + +   L      G   NL ++ +++  IG  V+  +VV     ++        +
Sbjct: 360 GSSIPISVMVALTLMRAAGFSLNLISMGSLVLGIGMIVDASIVVL----ESCFRSKNDKN 415

Query: 757 FRDLIDKS---INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
           F D   +    +  ++  S+ T+   F+ +  +    G +       + F +V +  S+I
Sbjct: 416 FFDAAVEGTGIVINSITGSIITTCVVFLPLAMLKGLSGQLFSQLGYTIVFCMVSSLFSAI 475

Query: 814 FIAAPILLFIY 824
            I   + LF +
Sbjct: 476 MIVPLLYLFFH 486



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 83/239 (34%), Gaps = 6/239 (2%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +          +    ++  +    V  +    +  +    + S                
Sbjct: 737 ITVKMNYPDESYDTINEIENILITGVTGTKTPLSDLATVSFEDSAVTITRSDKKYQVSIT 796

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
               +  +          +  +   + ++        +  + +   +  ++ +   + I 
Sbjct: 797 ADKVAGYKGDANSEADAFVDSVGLPNGVERATNAYNDMMSDEMTSLLNALLTAIFLIFIV 856

Query: 684 IWIRFKW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           + ++F+   F+L  + T+   +    G   +F +  ++ ++   L ++G  VN+ ++  D
Sbjct: 857 MAMQFESPRFSLMVMFTIPFSLIGAFGLLWIFDVPISMMSMIGFLMMVGTVVNNGILYVD 916

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVIGSFAIP 800
                +  Y   +   D + ++    +   + T++   IS+LPMA+ +G  ++   A+ 
Sbjct: 917 ----TVNQYKVEMPLDDALVEAGATRIRPILLTTLTTIISMLPMALGYGTDMLQGLALV 971


>gi|153002797|ref|YP_001368478.1| CzcA family heavy metal efflux protein [Shewanella baltica OS185]
 gi|151367415|gb|ABS10415.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS185]
          Length = 1017

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/591 (11%), Positives = 168/591 (28%), Gaps = 42/591 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD--EDDFVN 67
           L+ +I  + +++A         LD FP   P               ++L+      + + 
Sbjct: 14  LFVLIVALIIMLAGARAWFSIPLDAFPDISPTQ-----------VKIILKAPGMTPEEIE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             + +  +     +  + I   + +   + ITL F +         +V+  +  V     
Sbjct: 63  AQITVPIETELLGIPHQSILRSTTKYAISDITLDFDEGTDIYWARQQVSERIAAVWDSFP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 +   +T      + S   ++      +E+   +  +    +             
Sbjct: 123 EGVTGGVAPMSTPLSEIFMFS---LENPNLSLMERRQLLEWEIRPLLRTVAGVADVNILG 179

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                      P+ +     + A +    V  N+++      +                 
Sbjct: 180 GYAKSFSVTPKPAAMAAAGVSFAALQQAIVENNHNEGAGKLTI----------------- 222

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
              G       A         +  +      AR +      +I                 
Sbjct: 223 ---GTDTIIVRAEGRIDDIDELKQLVIKADDARVYRLQDLADIQIGHLARYGAVTKDGNE 279

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             +A+       +    ++        +                      +         
Sbjct: 280 TAEALIIALKDANTAQVVKNIKEKLDQISLTLPEGSQINTFYDRANLINTAIDTISNALF 339

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               LV+I+L + +   +  LV   S+ L  ++T  ++     +  L S+ G+V+ IG+ 
Sbjct: 340 EAVVLVIILLALFLGNVRAALVVSLSLPLAALMTFLMMDYFNLSANLMSLGGLVIAIGML 399

Query: 428 VDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           VDS+++V E +      ++       +          +    +  +I    L       G
Sbjct: 400 VDSSVVVVENMVNLIATKQRLPRLHLIFRATKDVAIPVVSGTVIVMIVFSPLLTLSGLEG 459

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A+T+  ++L ++  +++++  +  +++  K  K        +   +        
Sbjct: 460 KLFTPVAVTIVFAMLSALVLSLTVIPVIASYLVNEKAAKEPKAIEKLKQLYLGSLKGTFS 519

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            + RF  +  S+L     +  L           +G I L +  +  + L  
Sbjct: 520 HQKRFIVIAFSLLIISLGLFGL-VGKTFMPTLDEGDIILQLEKSPSISLEA 569



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 82/231 (35%), Gaps = 3/231 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +            +      E    + +  +  ++    + ++    +I+  +P  +
Sbjct: 256 LQDLADIQIGHLARYGAVTKDGNETAEALIIALKDANTAQVVKNIKEKLDQISLTLPEGS 315

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             NT      +    I      +  + + ++I + +       AL    +L L    T  
Sbjct: 316 QINTFYDRANLINTAIDTISNALFEAVVLVIILLALFLGNVRAALVVSLSLPLAALMTFL 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               F +  NL ++  ++  IG  V+  VVV + M  N+      +    LI ++  +  
Sbjct: 376 MMDYFNLSANLMSLGGLVIAIGMLVDSSVVVVENMV-NLIATKQRLPRLHLIFRATKDVA 434

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              V  ++   I   P+    G     F  P+A  IV A  S++ ++  ++
Sbjct: 435 IPVVSGTVIVMIVFSPLLTLSGLEGKLF-TPVAVTIVFAMLSALVLSLTVI 484



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 86/239 (35%), Gaps = 12/239 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ +L            + N    +          + V E+  K   EI   S    + 
Sbjct: 785  SDVATLSYKQGPIIIEREQGNRFSVITTNVQGRDIVSFVEELNAKIAQEIKLPSGYSVSF 844

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +  +      ++ + I+   + + ++  F      G I   +       G  +L+ 
Sbjct: 845  GGEFENQQRATSNLLLVIPIAIALITLILFTTFGSLAKAGLILANV-PFAMMGGIVSLYL 903

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   ++ A    + L+G +V + VV+     +  K   +  + R+ +++     L   +
Sbjct: 904  SGEYLSVPASVGFIALLGVAVLNGVVMVS-YYEQTKHMFS--NLRERVEQGAARRLRPIL 960

Query: 774  YTSMAA-FISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             T        ++P+      G  +    AI +  G++ +  +++++  PIL F  + R 
Sbjct: 961  MT-ATTAMFGLMPLVFASGPGAEIQKPLAIVVIGGLLTSTITTLYLL-PILYFWLEKRK 1017


>gi|116331634|ref|YP_801352.1| cation/multidrug efflux pump [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116125323|gb|ABJ76594.1| Cation/multidrug efflux pump [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 1065

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 63/567 (11%), Positives = 166/567 (29%), Gaps = 41/567 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +    +L+  +   GL+      +        P+     R                  
Sbjct: 10  RRHITTFMLFVAVGIFGLISIPRLPISLMPPSNSPAITILTR--------------YPGI 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E  S +      + S  + +++I + F         + +V   +  
Sbjct: 56  SPSKIEEIITKPIEEQISGVGGIEDILSSSEEGESRINVIFKPGTKISYRSLEVRSKIDL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +      + ++  ++        I + +   +       E       +   +    +   
Sbjct: 116 IRGNFPREVEEPAILRYDPTNKPIFIVKLESE--RYKLKELREFGENKYKKKFERIDGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  + D  +L Q      ++                          N  
Sbjct: 174 EIHVGGGFQREINIDIDKGKLLQTGVGLEEVLSKIRT-------------------ANVD 214

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +    + I   ++N        +  +            +  +     N+        D  
Sbjct: 215 VPAGNLLIGDNYINIRVIGKLIQIKEIGKIPITVGKSEQIVYLSDISNVKDEFKEKEDIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +   ++     L   L +  +      +          + + 
Sbjct: 275 RDAGKEVVSIYVQKAGDAN---SLALCEELRKELSSIHIEGIQQSINYDQSQTIKTAIAK 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      + ++VLF+ +      ++   SI L++I T  L+      + + S+ G  
Sbjct: 332 VADSAISGGIIAVVVLFLFLRNFYATILVSVSIPLSIISTFGLMYFFNVGINVISLCGSA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LG+G+ VD +++V +RI   +++N  V   +    SR    +F S +T++     +FF  
Sbjct: 392 LGVGMLVDCSVVVIDRIFFVHQENGFVEDGIVKASSRLSKELFASVLTSIAVFFPIFFSS 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
                   G AIT+  S++ S+  +++ +  +  FI+  +      + P      I    
Sbjct: 452 RELRDLYGGLAITVSASLVTSLIVSLTFLPTLAKFILTKESRFQTLVPPQYVLRYISKMK 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLF 565
           +   +   +  +       +     L 
Sbjct: 512 SYIEVGTYYKILSWLRNKILRRQTNLN 538



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 81/227 (35%), Gaps = 4/227 (1%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L S++      + +   K     L  + GD    + V+++         P +       
Sbjct: 813  ELSSIKKEKAESRIYRKNKRRTYGLTAKLGDIDTGSAVIKIETALKKISFPENYHYEMTG 872

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               K+         + ++   I + I   +   +      I T+       +    +  +
Sbjct: 873  NYKKLKESKTEMFNLIILAFIIIVCILSSLFESFLLPFLIILTIPFSAAGVILILFVCRM 932

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              N++     + L G +VN+ +++ +   + +K         +L+ + I E +   + T+
Sbjct: 933  SLNISVYIGFVMLAGITVNNSILIVETFLEKLKSNQY-YEIDELLTEGIRERIRPILITT 991

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +   + +LP  +    G  +    A+ +  G+ ++ + ++F+     
Sbjct: 992  ITTVLGLLPSVLDSGEGSQLWRPLAVTVVAGLSISTALTVFLFPAFF 1038



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 94/271 (34%), Gaps = 5/271 (1%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
               +   +   G    I   G I + V  +  +      SN++     +      D  K
Sbjct: 221 LIGDNYINIRVIGKLIQIKEIGKIPITVGKSEQIVYLSDISNVKDE-FKEKEDIARDAGK 279

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
             +     + GD+ +     E+ K+  +  +              I   + +     +  
Sbjct: 280 EVVSIYVQKAGDANSLALCEELRKELSSIHIEGIQQSINYDQSQTIKTAIAKVADSAISG 339

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             IA+++       +Y  +    ++ L I  T G    F +  N+ ++      +G  V+
Sbjct: 340 GIIAVVVLFLFLRNFYATILVSVSIPLSIISTFGLMYFFNVGINVISLCGSALGVGMLVD 399

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             VVV DR+     ++  +    D I K+ +  L + ++ S+   I+V     +    + 
Sbjct: 400 CSVVVIDRI---FFVHQENGFVEDGIVKA-SSRLSKELFASVLTSIAVFFPIFFSSRELR 455

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                +A  +  +  +S+ ++   L  +  +
Sbjct: 456 DLYGGLAITVSASLVTSLIVSLTFLPTLAKF 486


>gi|92117399|ref|YP_577128.1| heavy metal efflux pump CzcA [Nitrobacter hamburgensis X14]
 gi|91800293|gb|ABE62668.1| Heavy metal efflux pump CzcA [Nitrobacter hamburgensis X14]
          Length = 1060

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 72/563 (12%), Positives = 155/563 (27%), Gaps = 37/563 (6%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVF 89
             LD  P       I          +          V   +          + K  +   
Sbjct: 34  LPLDAIPDLSDTQVI---------VYTDYPGQAPQVVEDQVTYPLATAMLTVPKSKVVRG 84

Query: 90  SMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQ 149
                 + + + F D         +V  FL   +S+L       +    T        + 
Sbjct: 85  FSFFGVSFVYVIFEDGTDIYWARSRVLEFLNSASSRLPSGVTPTIGPDATGVGWVYQYAV 144

Query: 150 NNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTT 209
            + +  +S                +  +    +   +   + Q     DP R+R    T 
Sbjct: 145 VSKELNLSDTRAIQD---WNLKFALAKAGGVAEVASAGGFVRQYNVVLDPQRMRDRGITM 201

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
            KM       N    G    +         +  + +  ++                    
Sbjct: 202 QKMRDAIRASNADVGGRTVELSEFEYVVRGRGYIRNINDLG------------------- 242

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
             +   + G              P        +     +   I   +   +    I    
Sbjct: 243 DIVLKTDNGTPVLLRDVARVELGPDERRGITELNGEGEVTSGIILQRFGANALDVINNVK 302

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
                +          +           +    K T    + +V +V  + +L+ +  +V
Sbjct: 303 KRFQEIATSLPKSVEIVPVYDRSTLINAAIETLKHTLVEESIIVALVCIVFLLHVRSAMV 362

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR---KNQ 446
           A   + + V++    + LLG    + S+ GI + IG  VD+ I++ E   +        Q
Sbjct: 363 AILMLPVGVLIAFGAMKLLGIGSNIMSLGGIAIAIGAMVDAAIVMIENAHKRLERAAPGQ 422

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTA 503
           S    L    S     +F S +   ++ + +F      G      A T   ++  +   +
Sbjct: 423 SRLQILIDAASEVGPALFFSLLIITVSFMPIFTLESQEGRLFSPLAFTKTFAMAAAALLS 482

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +++V A+M+  +R + +             I   +    MRAR   + +++     ++  
Sbjct: 483 VTLVPALMVIFVRGRIVPEHKNPINRFLIWIYRPVIKGVMRARALVIVLALAILAVTVWP 542

Query: 564 LFTHGLNYGIDFKGGIQLGVLAN 586
               G  +  D   G  L +   
Sbjct: 543 ARQLGTEFMPDLNEGTLLYMPTT 565



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 64/159 (40%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + ++  + +R     A+ AI  L + +    G   L GI  N+ ++  +   IG
Sbjct: 343 SIIVALVCIVFLLHVR----SAMVAILMLPVGVLIAFGAMKLLGIGSNIMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+  +V+ +   K ++      S   ++  + +E      ++ +   +S +P+     
Sbjct: 399 AMVDAAIVMIENAHKRLERAAPGQSRLQILIDAASEVGPALFFSLLIITVSFMPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRLFSPLAFTKTFAMAAAALLSVTLVPALMVIFVRGR 497



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 13/148 (8%)

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----------DRMRK 746
            + +L   +   L      G   ++      + L G +    VV+           +  R 
Sbjct: 891  MLSLPFSLVGGLWLMWWLGFNLSVAVAVGFIALAGVAAETGVVMLIYLNQAYAEIEARRA 950

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
                  T     D + +     +   + T +A    +LP+      G  ++   A+PM  
Sbjct: 951  AEGRSVTRKDLYDAVMEGAVGRVRPKMMTVVAIMAGLLPIMWSTGIGSEIMQRIAVPMIG 1010

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G+V +   ++ +   I   I     ++ 
Sbjct: 1011 GMVSSTLLTLIVIPAIFGLIKGIGLRDG 1038


>gi|84625616|ref|YP_452988.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574860|ref|YP_001911789.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|84369556|dbj|BAE70714.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188519312|gb|ACD57257.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 1046

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/544 (11%), Positives = 145/544 (26%), Gaps = 38/544 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +  IGL+  L   +      + P                  H      
Sbjct: 9   KRPIGTSLLAIGLFVIGLMCYLRLDVASLPNIQIPIIF--------------VHATQPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +     L        S  +  + + L F  SR  ++ A  +   +  
Sbjct: 55  DASTMAFTVTAPLERHLGQLPGVDRMRSSSSESSSVVVLVFQSSRNIDSAAQDIQTAINA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       +       E  ++      +     A E           ++       
Sbjct: 115 SQSDLPSGLGTPMYSKANPNEDPVIAIALTSE--TQSADELYNVADSLLAQRLRQITGIS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +      +  + D   L  L  TT  +       N +             +     
Sbjct: 173 SVDIAGASTPAVRVDVDLRALNALGLTTDNLRNAVRAANVTSPTGFLSDGNTTMAIIAND 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V    +                           +   R         +           
Sbjct: 233 SVSKAAD-------------------FAQLAIATQSNGRIVRLGDVATVYDGQQDAYQAA 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +A  +   T++        LR+   P                S   
Sbjct: 274 WFNGKPAVVMYAFTRAGANIVETVDQVKAHIPELRSYLQPGTTLTPYFDRTPTIRASLHE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   +V++ + + +      L+A  ++ L++  +  ++ +LG +L   S+  +V
Sbjct: 334 VQATLMISLAMVILTMALFLRRLAPTLIAAITVPLSLAGSALVMYVLGFSLNNLSLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IG  VD  I+V E +     +  S   +   G      TI     + +   + + F  
Sbjct: 394 IAIGFVVDDAIVVIENVMRHLDEGMSRMEAALAGAREIGFTIVSITASLVAVFIPMLFAS 453

Query: 482 GG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G      R F +T+  +I++SM  ++++  A+    +             +    + + +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPALCSRFLSAHAEPEKPGRFGAWLDRMHERM 513

Query: 539 AIQF 542
              +
Sbjct: 514 LRVY 517



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/152 (17%), Positives = 67/152 (44%), Gaps = 9/152 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFA-LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++IS   +++ + +  +     L A  T+ L +  +     + G   N  ++ A++  IG
Sbjct: 338 LMISLAMVILTMALFLRRLAPTLIAAITVPLSLAGSALVMYVLGFSLNNLSLLALVIAIG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           + V+D +VV + +   M+     +S  +       E +G ++ +  A+ ++V    ++  
Sbjct: 398 FVVDDAIVVIENV---MRHLDEGMSRMEAALAGARE-IGFTIVSITASLVAVFIPMLFAS 453

Query: 792 SVI----GSFAIPMAFGIVVAASSSIFIAAPI 819
            +I      F + +   IVV+   S+ +   +
Sbjct: 454 GMIGAFFREFTVTLVAAIVVSMLVSLTLTPAL 485


>gi|322433954|ref|YP_004216166.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
 gi|321161681|gb|ADW67386.1| acriflavin resistance protein [Acidobacterium sp. MP5ACTX9]
          Length = 1118

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 82/679 (12%), Positives = 178/679 (26%), Gaps = 63/679 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G +           +   P       IS+G  L G         
Sbjct: 18  RRPVATFLLSVAIILAGAVA-----YKLLPVSSLPQVEFPT-ISVGAALPG--------A 63

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           + + +   +    +   S +        S  +    ITL F  +R     A  V   +  
Sbjct: 64  DPETMASAVATPLERQFSRIAGVNQMTSSSGEGSTSITLQFDLNRDVNGAARDVQAAINA 123

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S+L  +   N          + ++    +        +   +       +I   +   
Sbjct: 124 ARSQLPANLPSNPSYRKINPADAPIVM-LALTSDTMTVPQMYDQADSILAQKISQVDGVG 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHK------------------------- 216
           Q          +  E +P+ L         +                             
Sbjct: 183 QVFVGGSAKPAVRVEANPTLLAGYGLGLESLRTALGQVNVNQPTGYTNGAAQRISITTSD 242

Query: 217 --------------VLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
                                            +             +   ++   A   
Sbjct: 243 QLFGSEAYKPLIIATDKGPVSSATASSGLPSSVASAVTSNATSANSTTAAAVSTNAAVSA 302

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +  V  S                +   +  +  G +         I       +  
Sbjct: 303 TPVAQAAVTGSGISSHG-VVRISDVAEVVDGVENIQTGGLFNGKPAILLIVFKSPGANVI 361

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
            T++    +   L+A   P     V          S      T  I   LV++V+F+ + 
Sbjct: 362 STVDNVLAMLPRLKASVPPAIKIEVALDRTTTIRASVKDVTRTLIISIVLVILVVFVFLR 421

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
             +  L+   S+ L+++ T  ++ ++G TL   S+  + +  G  VD  I+V E I    
Sbjct: 422 EVRSTLIPSVSVPLSLMGTFGIMYVMGYTLDNLSLMALTISTGFVVDDAIVVIENIMRHL 481

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILIS 499
               S + +  +G      T+   + + +   + +   G   G   R FA+T+  +IL+S
Sbjct: 482 EMGLSPYEAAMVGSKEIGFTVLSMSTSLIAVFIPILLMGGIVGRLFREFAVTLSAAILVS 541

Query: 500 MFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR-----ARFWGVGISI 554
           +  +++    +    ++           +     +                R   +    
Sbjct: 542 LVVSLTTTPMLSAKFLKAHSEGRHGRLYVWGEKALDWMTGEYDRALKAVLKRQPLMLGIT 601

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
           + +      L+          +   +LG       D+S     +++ Q+ DI  +    +
Sbjct: 602 VLTFLLTVFLYIIVPKGFFPQQDTGRLGGQIRGQQDVSFDAMKIKATQMVDIVKKQDGVQ 661

Query: 615 KNFLVRLQYQPGDSVAQTR 633
              +      PG       
Sbjct: 662 NTMMFLGGGGPGGGGGNQA 680



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/136 (17%), Positives = 56/136 (41%), Gaps = 8/136 (5%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            +    L    ++ L +  T G   + G   +  ++ A+    G+ V+D +VV + +   
Sbjct: 421 REVRSTLIPSVSVPLSLMGTFGIMYVMGYTLDNLSLMALTISTGFVVDDAIVVIENI--- 477

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAF 803
           M+     +S  +       E +G +V +   + I+V    +  G ++      FA+ ++ 
Sbjct: 478 MRHLEMGLSPYEAAMVGSKE-IGFTVLSMSTSLIAVFIPILLMGGIVGRLFREFAVTLSA 536

Query: 804 GIVVAASSSIFIAAPI 819
            I+V+   S+     +
Sbjct: 537 AILVSLVVSLTTTPML 552


>gi|294811323|ref|ZP_06769966.1| MMPL domain protein [Streptomyces clavuligerus ATCC 27064]
 gi|294323922|gb|EFG05565.1| MMPL domain protein [Streptomyces clavuligerus ATCC 27064]
          Length = 779

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 159/568 (27%), Gaps = 56/568 (9%)

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            I     +  +        E                 L      +V     SD       
Sbjct: 162 TIVVGAVTSISDKQATDAEEALQKAIEDSPLLRESTSLGGSTPGHVQVAQISDEDVSNAE 221

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL---LGATLTLPSIAGIVLG 423
            I   +VL+VLF++        V      ++++LT+A L L                 LG
Sbjct: 222 MIAFPIVLVVLFLVFRGLVAAFVPLIGGIVSLLLTMAGLRLTTEFMTVSAGAMSLAFALG 281

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +GL++D  +L+  R REE    +    ++    + A  T+  S +T   A   L  F   
Sbjct: 282 LGLSIDFGLLIVSRFREEVAAGRGRGEAVRQTVATAGRTVLFSALTVAAALAALTAFPHP 341

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
            +R   I   +++L +   A+  + A++  +       +      +           + M
Sbjct: 342 YLRSMGIAGVITVLSAALFALVGLPALLAVLGNKINALAPRRWQRATGTSAATEGRWRRM 401

Query: 544 ---------------------------RARFWGVGISI----LFSICSICLLFTHGLNYG 572
                                        RF GV  S+      +      L     + G
Sbjct: 402 ASGVMRRPGLFAVIATGVLLLIASPLAGVRFTGVDPSLLPQETSAGRVAADLARDFEDPG 461

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                 +           L+     +E +   +     F+ +           G+ +   
Sbjct: 462 TAPLQIVLTTDGTPDAARLADYARKIEDVPGIESVGAPFELDGRHWEIDAVPAGNPLDDP 521

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--W 690
               + K +       +    T          +  K  +   I    + + +   F    
Sbjct: 522 AQDAVEKVRELTAPYTANFTGTTADYLAQEESIGDKLPLAAAI-LAGVTLLLLFAFSGAI 580

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTA-----------VAAVLTLIGYSVNDKVV 739
              L A+    L      GF      + NL             +       G S +  V 
Sbjct: 581 VLPLMALVMNTLSTGAAFGFLVWVFQDGNLGFSAQSGLEATTPLLVFALAFGLSTDYNVF 640

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI--SVLPMAVWGGSVIGSF 797
           +  R+++        +S R+ + + ++ T    + TS A      V  +A      I   
Sbjct: 641 LLSRIKE---ARAQGLSEREAVAQGLSRTGS--IVTSAAVLFCVPVGALAASRLVFIQEL 695

Query: 798 AIPMAFGIVVA-ASSSIFIAAPILLFIY 824
            +  AF ++V        +   ++  + 
Sbjct: 696 GLGAAFAVLVDATIVRALLVPSLMALLG 723



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 79/246 (32%), Gaps = 11/246 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              ++  V           +  ++                 +      L+   +    + 
Sbjct: 135 SRPEVKQVVDASSPEAGAALVSRDGRSTIVVGAVTSISDKQATDAEEALQKAIEDSPLLR 194

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
             +++  +     ++++          +I+   +L+ +++ F+    + A   LI  I  
Sbjct: 195 ESTSLGGSTPGHVQVAQISDEDVSNAEMIAFPIVLVVLFLVFRGL--VAAFVPLIGGIVS 252

Query: 707 TLGFFALFGIEFNLTAV------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L   A   +      V       A    +G S++  +++  R R+ +          + 
Sbjct: 253 LLLTMAGLRLTTEFMTVSAGAMSLAFALGLGLSIDFGLLIVSRFREEVAAGRGRG---EA 309

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           + +++       +++++    ++  +  +    + S  I     ++ AA  ++     +L
Sbjct: 310 VRQTVATAGRTVLFSALTVAAALAALTAFPHPYLRSMGIAGVITVLSAALFALVGLPALL 369

Query: 821 LFIYDW 826
             + + 
Sbjct: 370 AVLGNK 375


>gi|293390953|ref|ZP_06635287.1| acriflavine resistance protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951487|gb|EFE01606.1| acriflavine resistance protein [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 1032

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 61/464 (13%), Positives = 139/464 (29%), Gaps = 26/464 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
              V    + + +  F+    +E  +          +     + IT+    +        
Sbjct: 47  VSTVYPGADANLIQAFVTSKLEEAVAQADNVDYMSSTSSPSSSTITVKMKLNTDPNAALA 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +  V S+L    +   + ++T     + +S  +       A + +  I R    Q
Sbjct: 107 DVLAKVNSVRSELPKGIEDPTVSSSTGGSGIMYISFRS---GKLDASQVTDYIERVVKPQ 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
               E              L    DP ++     +  ++       N           ++
Sbjct: 164 FFTVEGVASVQIFGASEYALRIWLDPQKMAAQNLSATQVMSALSANNVQTAAGNDNGFYV 223

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
              +      +   E+S                     +     G +        +I   
Sbjct: 224 VYKNKVDTTTKSVDELS--------------------KLIVYSSGDKLVRLRDIADIELN 263

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            +      V           +  +  +     E    L   ++          +      
Sbjct: 264 KSSDTARAVANGADSVVLAINPTSSANPLTVAEKILPLYENIKNNLPDAIQTDILYDRTI 323

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
           A   S      T      +VL+V+ M +   +  L+   +I +++I  + +L  L  ++ 
Sbjct: 324 AINNSIDEVVKTIIEATIIVLVVITMFIGSFRAILIPVITIPISLIGVIMMLQTLDFSIN 383

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  ++L IGL VD  I+V E +    +  ++ F +  +G       +    I  +  
Sbjct: 384 LMTLLALILAIGLVVDDAIVVLENVDRHIKLGETPFRAAIIGTREIAVPVISMTIALIAV 443

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
              +   G   G   + FA+T+  ++ IS   A+++   M   +
Sbjct: 444 YSPMALMGGITGTLFKEFALTLAGAVFISGIVALTLSPMMTSKL 487



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGI------EFNLTAVAAV 726
            +++ + + + + I+F+     L  + ++ L I+  L     FG         N+ +   +
Sbjct: 852  VLAVVIIFLVLAIQFESIRDPLVIMISVPLAISGALLALNFFGFIGVAGSTLNIYSQVGL 911

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP- 785
            +TL+G      +++ +  ++         +  + I ++    L   + T+ A    ++P 
Sbjct: 912  ITLVGLITKHGILMCEVAKEE--QLNHGKTRIEAITEAAKVRLRPILMTTAAMIAGLIPL 969

Query: 786  MAVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPIL 820
            +   G   +  F+I +    G+ +    ++F+   I 
Sbjct: 970  LYATGAGAVSRFSIGIVIVAGLAIGTLFTLFVLPVIY 1006



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/203 (14%), Positives = 79/203 (38%), Gaps = 9/203 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K  + + +    + +  I       E+++  I   II  + + ++I     +   
Sbjct: 301 LYENIKNNLPDAIQTDILYDRTIAINNSIDEVVKTIIEATIIVLVVITMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  + T+ + +   +          NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPVITIPISLIGVIMMLQTLDFSINLMTLLALILAIGLVVDDAIVVLENV---DRHIKL 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGI 474

Query: 811 SSIFIAAPILLFIYDWRAKNARI 833
            ++ ++  +   +     + +++
Sbjct: 475 VALTLSPMMTSKLLKAHDQPSKL 497


>gi|90020765|ref|YP_526592.1| AcrB/AcrD/AcrF family protein [Saccharophagus degradans 2-40]
 gi|89950365|gb|ABD80380.1| acriflavin resistance protein [Saccharophagus degradans 2-40]
          Length = 1043

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 61/620 (9%), Positives = 177/620 (28%), Gaps = 45/620 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     +++  +I   GL       + Q   +            +G D            
Sbjct: 10  RKPVLAIVVNIIIIIAGLQAVSSLTVRQYPRNDNAVITINTA-YIGAD------------ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V GF+    +   S          S  Q  + +++    +        ++T  +  
Sbjct: 57  -AELVRGFITSPIERAVSGADGIDYVSSSSSQGVSSVSVRLELNYDPIKALAEITSKVNQ 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + +  ++   +          +    +++   + +  ++R    ++   E   
Sbjct: 116 VRGDLPPEAEVPVINVESADSQFAAAYLSFSSDILAD-NQITDYLVRVVQPRLSALEGIQ 174

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +          +     P R+     +  ++       N          +++      Q 
Sbjct: 175 RADVLGARTFAMRIWLQPDRMAAHNISPTQVRQALQANNYLAALGSTKGQYI------QV 228

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +++ +                   +                 +           
Sbjct: 229 NLSANTDLNSVDEFKE--------------LVLRSENGAIIRLKDVAEVVLGSESYDMEV 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +           +   +    +         ++A        ++          S S 
Sbjct: 275 RYSGKTATFMGIFPQPNANSLDVMALVREEMKNMQAALPKGLDAVIAYDATAYIESSISE 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V++V+F+ +   +  ++   +I L++I  + ++ + G +L L ++  IV
Sbjct: 335 VISTLIETLLIVVVVIFLFLGSIRSVIIPVVAIPLSLIGAVFVMQIFGFSLNLLTLLAIV 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I++ E +     + Q+ F +  +G       +     T +   + +   G
Sbjct: 395 LSVGIVVDDAIVMVENVERHISEGQTPFKAAILGARELVGPVIAMTTTLVAVYLPIGLQG 454

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK-----MKSIDINPLSRFFL 533
              G   + FA T+  ++ IS   AI++   M   +++          ++          
Sbjct: 455 GLTGSLFKEFAFTLAGAVTISGIVAITLSPMMASKMLKEGMEDEGFASTVARIFDRVKNR 514

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG--GIQLGVLANRPVDL 591
               +           +       +  +  + +       + +G     +   A+  +D 
Sbjct: 515 YTRMLDHTLEHRFPVYMVWVATAILGVVFYMQSPKELAPTEDQGVIFGIVEGSASSTMDQ 574

Query: 592 SVVRSNLESLQIGDISFQNF 611
           + + +   +         +F
Sbjct: 575 ASIFAAAANDAFSSFEETDF 594



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 72/188 (38%), Gaps = 9/188 (4%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             ++ ++  + + +      +          E+I   I  ++I  + + +++        
Sbjct: 303 EEMKNMQAALPKGLDAVIAYDATAYIESSISEVISTLIETLLIVVVVIFLFLG---SIRS 359

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            +  +  + L +   +    +FG   NL  + A++  +G  V+D +V+ + +    +  +
Sbjct: 360 VIIPVVAIPLSLIGAVFVMQIFGFSLNLLTLLAIVLSVGIVVDDAIVMVENV---ERHIS 416

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAA 809
              +          E +G  +  +       LP+ + G   GS+   FA  +A  + ++ 
Sbjct: 417 EGQTPFKAAILGARELVGPVIAMTTTLVAVYLPIGLQGGLTGSLFKEFAFTLAGAVTISG 476

Query: 810 SSSIFIAA 817
             +I ++ 
Sbjct: 477 IVAITLSP 484



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/179 (12%), Positives = 63/179 (35%), Gaps = 25/179 (13%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGI--------- 716
             K +  ++++++ + + +  +F  +   L  +   +       G      +         
Sbjct: 843  NKLLPAMMMASLLIFLVLAAQFNSFRDPLIVLGGSVP--LAWFGALIFTFLKMPNPNMHF 900

Query: 717  -------EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                     N+ +   ++TLIG    + ++V +      K+    ++    I +S    L
Sbjct: 901  WTDGWTTTLNIYSQIGLVTLIGLVAKNGILVVEFAN---KMQEQGLTKLAAIKESAGTRL 957

Query: 770  GRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               + T++A      P+ +    G     S  + +  G+ +    ++F+   I + I  
Sbjct: 958  RPVLMTTVATVAGHFPLVLVTGAGAEARNSIGLILVGGMAIGTFFTLFVIPSIYMLIAK 1016


>gi|325953704|ref|YP_004237364.1| heavy metal efflux pump, CzcA family [Weeksella virosa DSM 16922]
 gi|323436322|gb|ADX66786.1| heavy metal efflux pump, CzcA family [Weeksella virosa DSM 16922]
          Length = 1452

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 74/672 (11%), Positives = 190/672 (28%), Gaps = 51/672 (7%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNR--ISLGLDLRGGSHLVLEVDEDDFV 66
           ++  ++   G+  A      +  +D  P         I+L   L G             V
Sbjct: 18  LMTLLLIIWGVWSA-----TKIPIDAQPDITNNQVQIITLSPTLAG-----------QEV 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    ++    L K        R   + +T+ F D+         V+  L+    ++
Sbjct: 62  EQLVTFPVEQSIVNLPKVEEIRSVSRFGLSVVTVVFQDNVDIYFARQLVSQQLKEAQDQI 121

Query: 127 NVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                      + T   +    +L      +    A++           Q+  +    + 
Sbjct: 122 PDGIGTPELAPVSTGLGEVYQYILHPKEGSEDKYSAMDLRTMQDWIVARQLYGTPGIAEV 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                +L Q     DP+R++ +  + + +       N +  G     +          LV
Sbjct: 182 NSFGGLLKQYEVSIDPNRIKAMDVSISDIFTALENNNQNTGGAYIDKKPNAYFIRGIGLV 241

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               ++  I +    +          V            +    D +G  + ++      
Sbjct: 242 TSLEDVGNIVVKNTGSVPVFIKDVAEVQFGHATRYGALTYNGEVDAVGGIVMMLK----- 296

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                           + +  +++      +++       +       +     + S  +
Sbjct: 297 --------------GENTSEVVKSIKEKIPVIQQSLPEDVVIEPFLDRMDLVDRAISTVQ 342

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI--V 421
                 A +V+ VL + +   + GL+   +I L+++  L ++ L G +  L S+  I   
Sbjct: 343 KNLIEGALIVIFVLILFLGNFRAGLIVASAIPLSMLFALGMMRLFGVSANLMSMGAIDFG 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN-------ITALIAT 474
           L I  ++         +       +     +D     +   I  S        +   I  
Sbjct: 403 LVIDGSLIVVEATMHHLGLRKSTQRLTQAEMDEEVYESARKIRTSAAFGEVIILIVYIPI 462

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           + L    G      A T+  +IL ++  + + +  MM  +   KK  +           +
Sbjct: 463 LTLVGIEGKMFTPMAQTVSFAILGALILSFTYIP-MMSALCLSKKPITKKNFSDKMMDYL 521

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL-SV 593
                    +A      +  +        +F      G       +     +  +   + 
Sbjct: 522 QGVYKPLLEKAIRMKYVVIAVAVGLFTISIFFFSRMGGEFLPKLGEGDFAFHCILPQGTS 581

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +  +LE+        + FD  +  + +       +         +   +       T ++
Sbjct: 582 LSQSLETSMQASRIIKEFDEVRMVVGKTGAAEVPTDPMPPEATDLMIILKPQDEWKTKKS 641

Query: 654 TEIVGPKISREL 665
            + +  ++  +L
Sbjct: 642 YDELSNEMMEKL 653



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 95/247 (38%), Gaps = 19/247 (7%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + ++       Q         + + +        + V E+  K   +I   +    T 
Sbjct: 800  SQVANIDYKLGPAQISREGGKRRIYVGFNVQGRDVASVVNEIQDKLAEQIKLPTGYYFTY 859

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +  ++   + ++ V I+ + + I ++  F  +  A+   T + +      G FAL 
Sbjct: 860  GGQFENLQKATDRLLIAVPIALLLIFILLYFTFHSFKEAVLVYTAIPMS--AIGGVFALL 917

Query: 715  --GIEFNLTAVAAVLTLIGYSVNDKVVV---YDRM-RKNMKLYTTSISFRDLIDKSINET 768
               + F+++A    + L G +V + +V+   ++R+ ++              I +     
Sbjct: 918  LRDMPFSISAGVGFIALFGVAVLNGIVLIATFNRLEKEGWNEIVPR------IIEGAKTR 971

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + T+  A +  LPMA+    G  V    A  +  G++ A + ++F+  P+L  ++ 
Sbjct: 972  FRPVLMTASVASLGFLPMALSTSAGAEVQKPLATVVIGGLISATALTLFVL-PLLYLVFM 1030

Query: 826  WRAKNAR 832
               K  +
Sbjct: 1031 RNQKPPK 1037



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/355 (14%), Positives = 115/355 (32%), Gaps = 33/355 (9%)

Query: 507 VRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFT 566
           +R M  +I+  +   +  I  ++ F  +     +     R   + +SI     ++     
Sbjct: 160 LRTMQDWIVARQLYGTPGIAEVNSFGGLLKQYEVSIDPNRIKAMDVSISDIFTALENNNQ 219

Query: 567 HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
           +     ID K              L  V + +         F     E  F    +Y   
Sbjct: 220 NTGGAYIDKKPNAYFIRGIGLVTSLEDVGNIVVKNTGSVPVFIKDVAEVQFGHATRYGAL 279

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV--------------- 671
               +   +  +   +        +++ +   P I + L    ++               
Sbjct: 280 TYNGEVDAVGGIVMMLKGENTSEVVKSIKEKIPVIQQSLPEDVVIEPFLDRMDLVDRAIS 339

Query: 672 -----GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                 +  + I + + I     +   L   + + L +   LG   LFG+  NL ++ A+
Sbjct: 340 TVQKNLIEGALIVIFVLILFLGNFRAGLIVASAIPLSMLFALGMMRLFGVSANLMSMGAI 399

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL-IDKSINETLGRSVYTSM-----AAF 780
               G  ++  ++V +    ++ L  ++       +D+ + E+  R + TS         
Sbjct: 400 --DFGLVIDGSLIVVEATMHHLGLRKSTQRLTQAEMDEEVYES-ARKIRTSAAFGEVIIL 456

Query: 781 ISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           I  +P+    G     F   A  ++F I+ A   S F   P++  +   +    +
Sbjct: 457 IVYIPILTLVGIEGKMFTPMAQTVSFAILGALILS-FTYIPMMSALCLSKKPITK 510


>gi|304412018|ref|ZP_07393628.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS183]
 gi|307305913|ref|ZP_07585659.1| heavy metal efflux pump, CzcA family [Shewanella baltica BA175]
 gi|304349568|gb|EFM13976.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS183]
 gi|306911406|gb|EFN41832.1| heavy metal efflux pump, CzcA family [Shewanella baltica BA175]
          Length = 1017

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/591 (11%), Positives = 168/591 (28%), Gaps = 42/591 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD--EDDFVN 67
           L+ +I  + +++A         LD FP   P               ++L+      + + 
Sbjct: 14  LFVLIVALIIMLAGARAWFSIPLDAFPDISPTQ-----------VKIILKAPGMTPEEIE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             + +  +     +  + I   + +   + ITL F +         +V+  +  V     
Sbjct: 63  AQITVPIETELLGIPHQSILRSTTKYAISDITLDFDEGTDIYWARQQVSERIAAVWDSFP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 +   +T      + S   ++      +E+   +  +    +             
Sbjct: 123 EGVTGGVAPMSTPLSEIFMFS---LENPNLSLMERRQLLEWEIRPLLRTVAGVADVNILG 179

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                      P+ +     + A +    V  N+++      +                 
Sbjct: 180 GYAKSFSVTPKPAAMAAAGVSFAALQQAIVENNHNEGAGKLTI----------------- 222

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
              G       A         +  +      AR +      +I                 
Sbjct: 223 ---GTDTIIVRAEGRIDDIDELKQLVIKADDARVYRLQDLADIQIGHLARYGAVTKDGNE 279

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             +A+       +    ++        +                      +         
Sbjct: 280 TAEALIIALKDANTAQVVKNIKEKLDQINLTLPEGSQINTFYDRANLINTAIDTISNALF 339

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               LV+I+L + +   +  LV   S+ L  ++T  ++     +  L S+ G+V+ IG+ 
Sbjct: 340 EAVVLVIILLALFLGNVRAALVVSLSLPLAALMTFLMMDYFNLSANLMSLGGLVIAIGML 399

Query: 428 VDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           VDS+++V E +      ++       +          +    +  +I    L       G
Sbjct: 400 VDSSVVVVENMVNLIATKQRLPRLHLIFRATKDVAIPVVSGTVIVMIVFSPLLTLSGLEG 459

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A+T+  ++L ++  +++++  +  +++  K  K        +   +        
Sbjct: 460 KLFTPVAVTIVFAMLSALVLSLTVIPVIASYLVNEKAAKEPKAIEKLKQLYLGSLKGTFS 519

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            + RF  +  S+L     +  L           +G I L +  +  + L  
Sbjct: 520 HQKRFIVIAFSLLIVSLGLFGL-VGKTFMPTLDEGDIILQLEKSPSISLEA 569



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 81/231 (35%), Gaps = 3/231 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +            +      E    + +  +  ++    + ++    +I   +P  +
Sbjct: 256 LQDLADIQIGHLARYGAVTKDGNETAEALIIALKDANTAQVVKNIKEKLDQINLTLPEGS 315

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             NT      +    I      +  + + ++I + +       AL    +L L    T  
Sbjct: 316 QINTFYDRANLINTAIDTISNALFEAVVLVIILLALFLGNVRAALVVSLSLPLAALMTFL 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               F +  NL ++  ++  IG  V+  VVV + M  N+      +    LI ++  +  
Sbjct: 376 MMDYFNLSANLMSLGGLVIAIGMLVDSSVVVVENMV-NLIATKQRLPRLHLIFRATKDVA 434

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              V  ++   I   P+    G     F  P+A  IV A  S++ ++  ++
Sbjct: 435 IPVVSGTVIVMIVFSPLLTLSGLEGKLF-TPVAVTIVFAMLSALVLSLTVI 484



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 85/239 (35%), Gaps = 12/239 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ +L            + N    +          + V E+  K   EI   S    + 
Sbjct: 785  SDVATLSYKQGPILIEREQGNRFSVITTNVQGRDIVSFVEELNAKIAQEIKLPSGYSVSF 844

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +  +      ++ + I+   + + ++  F      G I   +       G  +L+ 
Sbjct: 845  GGEFENQQRATSNLLLVIPIAIALITLILFTTFGSLSKAGLILANV-PFAMMGGIVSLYL 903

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   ++ A    + L+G +V + VV+     +  K   +  +  + +++     L   +
Sbjct: 904  SGEYLSVPASVGFIALLGVAVLNGVVMVS-YYEQTKHMFS--NLCERVEQGAARRLRPIL 960

Query: 774  YTSMAA-FISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             T        ++P+      G  +    AI +  G++ +  +++++  PIL F  + R 
Sbjct: 961  MT-ATTAMFGLMPLVFASGPGAEIQKPLAIVVIGGLLTSTITTLYLL-PILYFWLEKRK 1017


>gi|124515528|gb|EAY57038.1| Heavy metal efflux pump, CzcA family [Leptospirillum rubarum]
 gi|206601752|gb|EDZ38235.1| Heavy metal efflux pump, CzcA family [Leptospirillum sp. Group II
           '5-way CG']
          Length = 1061

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 76/600 (12%), Positives = 162/600 (27%), Gaps = 40/600 (6%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           ++ +   I   G +      L +S LD  P       I     L               V
Sbjct: 16  VLAISLAILVWGGIS-----LYRSPLDAIPDLSDTQVIVKAPFL---------GQPPSVV 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +          +              + I + F +         +V  +L  V  +L
Sbjct: 62  ENQVTYPLTTAFLTIPGVRHVRGYSDFGNSLIYILFKEGTDPYWARSRVLEYLNQVEGRL 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                  L    T                                 ++       Q    
Sbjct: 122 PAGVVATLGPDATGLGWIYEY-ALVDKTHRYDLSRLRALQDWFLKFELQSVHGVAQVASV 180

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             ++ +   E DP +L       +++       N    G +  +   +     +  +   
Sbjct: 181 GGMVKEFQVEADPRKLLAYHIPLSRVEAAIRDANGDVGGSVVDMGEAQYMVRTRGYIRSL 240

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +I                    + +     G              P        +    
Sbjct: 241 SDIR------------------KIPLKMGAGGIPVRISDVASVHLGPELRQGIAELDGKG 282

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   I   +   +    IE        L     P    +      G  L S        
Sbjct: 283 EVAGGIVIAREGTNSLKIIEAVRKKLKELAPMLPPGVEVVTTYDRSGLILKSIRTLLEKL 342

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
              +  V +V  + +   +  LVA  S+ + +     L++  G T  + S+ GI + +G+
Sbjct: 343 LEESVAVSLVCLLFLSRIRSSLVAILSLPVGIFAAFVLMAWQGLTANIMSLGGIAVSVGV 402

Query: 427 AVDSNILVNERIREENRKNQ---SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---F 480
            VD+ I++ E + +   ++    + + +          ++F S +   ++ + +F     
Sbjct: 403 MVDAAIVMIENMHKHRERSDEAETSWETALRAAQEVGPSLFFSLLVITVSFLPIFALQEQ 462

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G   +  A T   SI IS   +I++V  +M F+IR K     D         +   +  
Sbjct: 463 EGRLFKPLAFTKTYSIAISAGLSITLVPVLMGFLIRGKMKPEEDNVINRMLVFLYRPVIG 522

Query: 541 QFMRARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             +R +   +       +  +I +           ++G +         V +      L+
Sbjct: 523 WVLRHKKMTIAFAVACLATAAIPMTHLGTEFMPPLYEGDLLYMPTLTPGVSVGESSHLLQ 582



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 93/279 (33%), Gaps = 7/279 (2%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                   +     +       G   + V  +    + +     + +   D   +   G 
Sbjct: 229 YMVRTRGYIRSLSDIRKIPLKMGAGGIPVRISDVASVHLGPELRQGIAELDGKGEVAGGI 288

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                           + ++ E+       +  ++T   + ++   I   L +     V 
Sbjct: 289 VIAREGTNSLKIIEAVRKKLKELAPMLPPGVEVVTTYDRSGLILKSIRTLLEKLLEESVA 348

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           +S +     +    +   +L AI +L + I       A  G+  N+ ++  +   +G  V
Sbjct: 349 VSLVC----LLFLSRIRSSLVAILSLPVGIFAAFVLMAWQGLTANIMSLGGIAVSVGVMV 404

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---G 791
           +  +V+ + M K+ +    + +  +   ++  E      ++ +   +S LP+       G
Sbjct: 405 DAAIVMIENMHKHRERSDEAETSWETALRAAQEVGPSLFFSLLVITVSFLPIFALQEQEG 464

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +    A    + I ++A  SI +   ++ F+   + K 
Sbjct: 465 RLFKPLAFTKTYSIAISAGLSITLVPVLMGFLIRGKMKP 503


>gi|312137816|ref|YP_004005152.1| integral membrane protein mmpl1 [Rhodococcus equi 103S]
 gi|325676081|ref|ZP_08155763.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Rhodococcus equi ATCC 33707]
 gi|311887155|emb|CBH46464.1| putative integral membrane protein MmpL1 [Rhodococcus equi 103S]
 gi|325553121|gb|EGD22801.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Rhodococcus equi ATCC 33707]
          Length = 777

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 66/519 (12%), Positives = 154/519 (29%), Gaps = 65/519 (12%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGI 424
           I   +  IVL +         +   +  + +++    +++    + L S+     I++G+
Sbjct: 225 IGIAVAAIVLVITFGSLVAAGLPLITAIIGIMIGSLGITVATGFMDLSSMTPTLAIMIGL 284

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            +A+D ++ +  R + E         +       A S +  + +T +IA V L   G   
Sbjct: 285 AVAIDYSLFIVSRFKHELSLTDDRSEAAGRAVGTAGSAVVFAGLTVIIALVALRVVGIPF 344

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           +         ++ I++  A++++ A++    R      I                     
Sbjct: 345 LSDMGAAAASTVFIAVLIALTLLPAILGLFGRKAFAGRIPGLSQRDAEGDDGKKTFSQRY 404

Query: 545 ARFWGVGISILFS-----------------------------ICSICLLFTHGLNYGIDF 575
            R      ++                                  +          +G   
Sbjct: 405 GRAVVRRPAVGLILGVVLLGALAIPAAKLELALPNEGSGDPATSARQAYDLVNEGFGPGR 464

Query: 576 KGGIQLGVLANRPVDLS--------VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
            G + + V A      +           S    +    +   N  G+   ++        
Sbjct: 465 NGPLLVVVDAQDATVPAGEAFGAVVAKISEQPDVLNAQVIGANQAGDTAQILVTPRSGPS 524

Query: 628 SVAQTRVLEMVKKKI----TEIVPLSTIQNTEIVGPKISRELIRKGI--VGVIISAIAML 681
             +   ++  ++        +I     +     +   +S  L    +  + V++    +L
Sbjct: 525 DPSTMDLVADIRSAESDLNDQIGVNYGVTGQTALEGDVSERLQDALVPYLAVVVGLAFVL 584

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE------------FNLTAVAAVLTL 729
           + +  R      L A    +L +  T G       E             +   +  +  +
Sbjct: 585 LMLVFR-SVLVPLTATLGFLLSVLATFGATVAVFQEGWGGIAANPQPIVSFMPIFLIGVV 643

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            G +++ +V +  RMR+    Y    S +D +    N    R V  +    ISV    + 
Sbjct: 644 FGLAMDYQVFLVTRMREE---YVHGASAKDAVAVGFNH-GARVVTAAAIIMISVFAAFIA 699

Query: 790 -GGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDW 826
              S I S    +A  +   A    + I   ++  + D 
Sbjct: 700 EPNSFIKSMGFALAAAVFFDAFIVRMVIIPSVMALMGDK 738


>gi|260433293|ref|ZP_05787264.1| acriflavin resistance protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417121|gb|EEX10380.1| acriflavin resistance protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 1262

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 84/638 (13%), Positives = 164/638 (25%), Gaps = 61/638 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++   ++   IG              +  P                   L + V  
Sbjct: 11  RARMVLAFIAISLIIGGYA-----YVGLPKEGEPDIEIPA-------------LFVSVQF 52

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                   +       +   + L        +  +    I L F     K  I   V   
Sbjct: 53  PGISAEDSENLLIKPMETELADLDGLKEMTATAAEGYAGIALEFDFGWDKTAITADVRDA 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +    +K     ++  L      E  IV+   +           +    +   D +   +
Sbjct: 113 MNSAQAKFPEGAEQYTLTEINFSEFPIVIVNLSGAVPERTMARIA----KDLQDDLEALD 168

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           S ++   +      L    DP RL     T A++       N               S  
Sbjct: 169 SVLEAGIAGNRDEMLEVIIDPLRLEAYNVTAAELINVVQNNNQLIAAGEVETEQGAFSVK 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                +   ++ G+ +                       G R         I        
Sbjct: 229 IPSSFKTPEDVYGLPIKV--------------------NGDRVVTLGELAEINYTFEDRE 268

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKL----NIVEERNVGA 354
                            +   +   T+       A   A   P                 
Sbjct: 269 GTARFNGEPTVALQVVKRKGFNLIDTVAQVKETVAKAEAKWPPELQAAVNVGTSNDQSRI 328

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
                S  +G+      LV+IV+   +      L+  F+I  + +L  A L+++G +++ 
Sbjct: 329 VGSMVSQLEGSVLTAIALVMIVVLGSLGTR-AALLVGFAIPTSFLLCFAFLAIMGVSISN 387

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
             + G++L +G+ VD  I+V E   +   +      +      R +  I  S  T L A 
Sbjct: 388 IVMFGLILAVGMLVDGAIVVVEYADKRIAEGVGPMHAYVEAAQRMFWPIVSSTATTLCAF 447

Query: 475 VVLFFFGGGAVRGFA---ITMGLSILISMFTAISIVRA-------MMIFIIRYKKMKSID 524
           + + F+ G          +T+   +  S+  A+  +         +     R        
Sbjct: 448 LPMLFWPGIPGEFMGMLPVTLIFVLSASLIVALIYLPVMGGVSGRLSRVFDRSSNWLRAR 507

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                R  ++P  + + F+ A        +L       LL    L     F G + L   
Sbjct: 508 TPWWVRAIMVPPAVYMIFLGAMQLLNPAYLLPEGARGGLLLGVALLLLGGFAGSVTLSAA 567

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQ 622
                    V +  E    G +           +V + 
Sbjct: 568 RIERKPDERVHTAKEHTAFGYVIKFLVGNPIMPVVSIV 605



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 85/262 (32%), Gaps = 16/262 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V  +R V L  +     + +  + + +        L  ++ +  + +     ++   
Sbjct: 243 PIKVNGDRVVTLGELAEINYTFEDREGTARFNGEPTVALQVVKRKGFNLIDTVAQVKETV 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIV----GVIISAIAMLIYIWIRFKWYFALG 695
            K     P        +        ++   +      V+ +   ++I +        AL 
Sbjct: 303 AKAEAKWPPELQAAVNVGTSNDQSRIVGSMVSQLEGSVLTAIALVMIVVLGSLGTRAALL 362

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLY 751
               +         F A+ G+  +   +  ++  +G  V+  +VV +    R+ +     
Sbjct: 363 VGFAIPTSFLLCFAFLAIMGVSISNIVMFGLILAVGMLVDGAIVVVEYADKRIAE----- 417

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
              +       ++        V ++     + LPM  W G   G F   +   ++   S+
Sbjct: 418 --GVGPMHAYVEAAQRMFWPIVSSTATTLCAFLPMLFWPGIP-GEFMGMLPVTLIFVLSA 474

Query: 812 SIFIAAPILLFIYDWRAKNARI 833
           S+ +A   L  +     + +R+
Sbjct: 475 SLIVALIYLPVMGGVSGRLSRV 496



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 82/271 (30%), Gaps = 25/271 (9%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                      V A          +   +        Q    E    V+     GD+    
Sbjct: 922  TPDGEQRLAVVRAVPEGSEPAGATINGADGTAYTLVQLTGAETLRDVQAAIDDGDARLTL 981

Query: 633  RVLEMVKKKITEIVPLSTIQNT--EIVGPKISRELIRKGIV--GVIISAIAMLIYIWIRF 688
                     +TE +      NT           +   +  +    + +   M + +  +F
Sbjct: 982  INPNERIAVLTEWLDTQPFANTITWEWTGDQEDQAESQAFLSSAFLAALGLMFVILLAQF 1041

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +Y ++  +  ++L  T  L    +    F++      ++ L G  VN+ +V+ D  ++
Sbjct: 1042 NSFYNSVLVLLAVVLSTTGVLIGMMVMQQPFSIIMTGTGIVALAGIVVNNNIVLIDTYQE 1101

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-------AVWGGSVI----- 794
              +         D I ++    +   + T++     + PM        + GG  I     
Sbjct: 1102 YSRYMPR----IDAIVRTAEARIRPVLLTTLTTMAGLTPMMFGLSLDFINGGYSIDSPTA 1157

Query: 795  ---GSFAIPMAFGIVVAASSSIFIAAPILLF 822
                  A  + FG+ +A   ++ +    L  
Sbjct: 1158 LWWKQLATAVVFGLGIATVLTLIVTPSFLAL 1188


>gi|217968773|ref|YP_002354007.1| acriflavin resistance protein [Thauera sp. MZ1T]
 gi|217506100|gb|ACK53111.1| acriflavin resistance protein [Thauera sp. MZ1T]
          Length = 1102

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 69/554 (12%), Positives = 161/554 (29%), Gaps = 25/554 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            +   ++    +  +G++  L     Q+  +  P  +                + L    
Sbjct: 18  TSKLTLVFIIAVALMGVVAVL-----QTPREENPQIIVPAA---------AVMVGLPGAS 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    + + S L        + R  Q  + + F     KE    K+   +   
Sbjct: 64  ASEVESLVVTPLEGILSELPGVDHIESTSRNSQGIVQVQFKVGESKEQSLVKLYDRVMAS 123

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  D    L+ +    ++ IV       +   +A+ +  E   +  +++  +E+   
Sbjct: 124 RAWLPADATTPLVQSVDADDVPIVTFTLASSKYDDYALNRMAE---RMAERLRSTENVSV 180

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++  E DP RL+    T  +                  +         Q +
Sbjct: 181 VSLRGGQHREITIELDPDRLQAYGVTLGQARAA-----FPISNLTLPLPPTVRDGQVQAI 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D    S   +         K    V D++    G                        
Sbjct: 236 KLDAAYTSAEDVRNQLIAVRDKRPVYVRDVATVTDGPPSEPTTASRLSFGLGDPRFGTAD 295

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
            T         + K   +              ++A  +P  + +V  RN G         
Sbjct: 296 ATDLPAVTIAVAKKKGTNAVVVANAVIDRMQRMQATFVPQDIQVVVTRNDGQKADDAVNL 355

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                 +A + + ++ ++ L  +  L+   ++ L + +TL    L G T+   ++  ++L
Sbjct: 356 LLEHLTIALVTVGLVLILFLGWREALIVMITVPLIMGITLTANLLGGVTINRVTLFALIL 415

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGF---SRAYSTIFDSNITALIATVVLFF 479
            +GL VD+ I+V E I       +             +   +    +    ++  + L  
Sbjct: 416 ALGLLVDAAIVVIENIHRHYASRKPKADKEAETVLATNEIGNATNLATFAVMLVFITLLL 475

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              G  R +   + +++ ++M  +I +   ++ +       +       S          
Sbjct: 476 ALTGMPRQYFFPVAVTVPVAMAASIVVAYIVVPWASNRWLHRHDIRQEESAHGQQSHGHD 535

Query: 540 IQFMRARFWGVGIS 553
                 R +    S
Sbjct: 536 TPGRIERLYLRLFS 549



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 32/195 (16%), Positives = 83/195 (42%), Gaps = 13/195 (6%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALG 695
             ++ K      +   Q       +++ ++ R   + +  + + +    +     +   L 
Sbjct: 905  NLRFKEDVPDTIDGYQLLWGGEMRMTMDVYRDLTISLSGALLIIYFALVAYYRSFIIPLV 964

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            A++ + L I        L G++F+ T++  ++ L G  + + +++ D ++ N++     +
Sbjct: 965  AMSAVPLGIIGIFPGHWLVGVDFSATSMVGIIALAGVVIRNSLLIIDFIQDNIR---HGM 1021

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMAFGIVVAASSS 812
               D + ++    L   + T +A       M    V+GG      AI + FG +V+ + +
Sbjct: 1022 PLEDAVREAGAVRLRPILLTMLAIIFGSAIMVTDPVFGG-----LAISLIFGTLVSTALT 1076

Query: 813  IFIAAPILLFIYDWR 827
            +F+  P+L  ++  R
Sbjct: 1077 VFVV-PLLYELHAKR 1090



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 65/155 (41%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ + + + + +   W  AL  + T+ L +  TL    L G+  N   + A++  +G 
Sbjct: 360 LTIALVTVGLVLILFLGWREALIVMITVPLIMGITLTANLLGGVTINRVTLFALILALGL 419

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+  +VV + + ++                + NE    +   + A  +  + + +    
Sbjct: 420 LVDAAIVVIENIHRHYASRKPKADKEAETVLATNEIGNATNLATFAVMLVFITLLLALTG 479

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +   +  P+A  + VA ++SI +A  ++ +  +  
Sbjct: 480 MPRQYFFPVAVTVPVAMAASIVVAYIVVPWASNRW 514


>gi|153002038|ref|YP_001367719.1| acriflavin resistance protein [Shewanella baltica OS185]
 gi|151366656|gb|ABS09656.1| acriflavin resistance protein [Shewanella baltica OS185]
          Length = 1063

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 76/674 (11%), Positives = 175/674 (25%), Gaps = 45/674 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+    +L   +   GL            +       P   ++L         +     
Sbjct: 13  RNSVAANLLMWALLVGGLFS---------TVLINKEVFPSFELNL-----LNISVAYPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   + +  +E    +           +    IT+   D    + + D+  L L  
Sbjct: 59  APQEIEEGINIKIEEAIQDINGIKKVTSVASEGVGSITVEVEDGYEVQTVLDEAKLRLDA 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S   V+ +K  +      E +++      D  +    E +    +   D +    +  
Sbjct: 119 I-STFPVNIEKPNIYQIK-PENNVIWVSVYGDMTLHDMKELA----KSVRDDLTQLPAVT 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++  E    +LR+   T  +++      +    G           DG+  
Sbjct: 173 RAKVTGVRDYEIAIEVSEDKLREYGLTFTQVALAVQNSSFDLPGGSIRA-----QDGDIL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L       +G                    +        R        I       L+  
Sbjct: 228 LRTKGQAYTGDD--------------FANIVVTTRPDGSRVMLPQVATIKDDFEERLEYT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +               RA                   G  ++
Sbjct: 274 RFNGKPAAIIEVTSVDDQNALDIAAQVKQYVEDRRATLPANAQLDTWGDMTHYLKGRLNM 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL--LGATLTLPSIAG 419
                   A LV I+L M +   K        + +  + T+ ++ L     T+ + ++  
Sbjct: 334 MMSNMFYGALLVFIILAMFL-DLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFA 392

Query: 420 IVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +L +G+ VD  I++ E    E  R   SV   +      A    F    T      +L 
Sbjct: 393 FILVLGIVVDDAIVIGESAYTEVERHGHSVDNVIRGAQKVAMPATFGVLTTIAAFIPMLM 452

Query: 479 FFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   +  +   + + L +  S+  +  I+ A +  +   K           +      
Sbjct: 453 VSGPMGIIWKSIGMVVILCLAFSLVESKFILPAHLAHMKFKKPGAPRGFFGRLKANFNDR 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R +               +    L+  +   G ++     + P D   V+ 
Sbjct: 513 VQHFIHHSYRNFLERCIKQRYNVVAAFIGVLVLSIALVASGKVRWVFFPDIPSDFIQVQL 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++     + + +     +  L ++  +         V        +        + T+ 
Sbjct: 573 EMDEGSSEENTLKVVQSIEEALYKMNDKMEQDNGYQVVKHSFINMSSRTSAFIFAELTKG 632

Query: 657 VGPKISRELIRKGI 670
              ++    I    
Sbjct: 633 EDREVDGVTIAAAW 646



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 89/256 (34%), Gaps = 10/256 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       +               S    DG++   +              V E+ K  +
Sbjct: 778  IRTPTGTSVPFSTVAQIEKGESYASITRVDGKRAITITANANKNIVEPSKVVQEIQKDYL 837

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             ++        T + G  +  +    G++ G   +   +   + I  K  ++   I   +
Sbjct: 838  PQLQAKYPKIQTALDGGSLDEQNAMVGLMQGFFFALFTIYALMAIPLK-SYSQPLIIMSV 896

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +        F     G+  ++ ++  ++ L G  VND +++ D +    +     +S R 
Sbjct: 897  IPFGIIGALFGHLIQGLAMSVLSLCGIVALAGVVVNDSLILVDFVN---RAREQGLSVRQ 953

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                S        + TS+  F+ ++P+ +       ++   A  +AFGI+ +   ++ + 
Sbjct: 954  AAVDSGCYRFRAIILTSLTTFVGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILV 1013

Query: 817  APILLFIYDWRAKNAR 832
              + + + D    ++R
Sbjct: 1014 PLLYIILDDVSRSSSR 1029



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 89/280 (31%), Gaps = 8/280 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI      I L        G DF   +         V L  V +  +  +      +   
Sbjct: 218 SIRAQDGDILLRTKGQAYTGDDFANIVVTTRPDGSRVMLPQVATIKDDFEERLEYTRFNG 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +        +++     ++   +     +P +   +T        +  +   +  
Sbjct: 278 KPAAIIEVTSVDDQNALDIAAQVKQYVEDRRATLPANAQLDTWGDMTHYLKGRLNMMMSN 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
           +   A+ + I + +      A   +  L +    T+    L  F +  N+  + A + ++
Sbjct: 338 MFYGALLVFIILAMFLDLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFAFILVL 397

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ +      ++     S  ++I  +    +  +    +    + +PM +  
Sbjct: 398 GIVVDDAIVIGESA--YTEVERHGHSVDNVIRGAQKVAMPATFG-VLTTIAAFIPMLMVS 454

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G +     S  + +   +  +   S FI    L  +   +
Sbjct: 455 GPMGIIWKSIGMVVILCLAFSLVESKFILPAHLAHMKFKK 494


>gi|117922415|ref|YP_871607.1| CzcA family heavy metal efflux protein [Shewanella sp. ANA-3]
 gi|117614747|gb|ABK50201.1| heavy metal efflux pump, CzcA family [Shewanella sp. ANA-3]
          Length = 1045

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/598 (11%), Positives = 165/598 (27%), Gaps = 45/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++I+  MI   G+       L ++ LD  P       I                 
Sbjct: 11  RQRLMVLIIAMMITVWGI-----QELRKTPLDALPDLSDVQVI---------IKTPYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APKLVEEQVTYPLSTAMLAVPGAKTVRGYSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++S+L    + +L    +                     +           ++       
Sbjct: 117 ISSRLPQGVQPSLGPDASGVGWVFEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +        +P ++       A +       N+   G +  +         + 
Sbjct: 176 EVATVGGMEQTYQIVLEPDKMAIYKLDIAAVKQAIDKANSEAGGSVVEMAEAEYMVRAKG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +   I L   + +      K V  +       R   E+  +             
Sbjct: 236 YRQTLEDFREIPLGITSPSGTGLLLKDVATVRKGPASRRGIAELDGE------------- 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +   TI+        L+ G       I           S   
Sbjct: 283 ----GEVVGGIVVMRYGENALATIDAVKAKLEELKTGLPDGVEIIPTYDRSQLIQKSVDN 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI 
Sbjct: 339 LFSKVVEEMLVVGLVCLLFLLHARSTLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIA 398

Query: 422 LGIGLAVDSNILVNERIREENRKN---QSVFCSLDMGFS-------RAYSTIFDSNITAL 471
           + IG  VD  I++ E + +             S+   +             +F S I   
Sbjct: 399 IAIGAVVDGAIVMIENLHKHLEHFKAEHDREPSVKEHWRIVTEASIEVGPALFFSLIIIT 458

Query: 472 IATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ V +F      G      A T   ++  + F +I++V  +M + IR K          
Sbjct: 459 LSFVPVFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSERSNPIS 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                +        ++     + ++++    +   +   G  +    + G  L +   
Sbjct: 519 RVLIALYQPALKLVLKFPKITILLALVALASAWYPMTRMGSEFMPALEEGDLLYMPTA 576



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 82/244 (33%), Gaps = 13/244 (5%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +    +        E   L+   +   +  +    +   K  + E + +    +    G 
Sbjct: 802  ADIEINDGAPMLKSENGRLISWVFIDIEGTSIGEYIAAAKTALDEELVVPPRYSYSFAGQ 861

Query: 660  KISRELIR---KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                + +    K ++ + +  I +L+ +        ++  + +L   +  +     L   
Sbjct: 862  YEYMQRVDAKLKQVIPMALGVIFILLMMTFGSTMQASII-MLSLPFALVGSTWLLYLLDY 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLG 770
              ++     ++ L G +    VV+        + R+    Y T    ++ + +     + 
Sbjct: 921  NISVAVAVGMIALAGVAAEFGVVMLVYLNNAIKHRQEKNTYHTVEDLKEALIEGAVMRIR 980

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                T    F  +LP+      G  V+   A PM  G+V A   S+F+   + L IY  +
Sbjct: 981  PKAMTVATIFFGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLIYARQ 1040

Query: 828  AKNA 831
               A
Sbjct: 1041 INKA 1044



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +  K    L  K +  
Sbjct: 287 GGIVVMRYGENALATIDAVKAKLEELKTGLPDGVEIIPTYDRSQLIQKSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNM----KLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K++      +    S ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEHFKAEHDREPSVKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+          F   A    F +  AA  SI +   ++ +    +  + R
Sbjct: 463 PVFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSER 513


>gi|255322332|ref|ZP_05363478.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 [Campylobacter
           showae RM3277]
 gi|255300705|gb|EET79976.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 [Campylobacter
           showae RM3277]
          Length = 1006

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 67/672 (9%), Positives = 192/672 (28%), Gaps = 53/672 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++ +  +   G +  L     +  ++ FP  +    I +     G   L      
Sbjct: 8   RPITTLMFFVALVFFGAMSLL-----RMPVNLFPEVVIP-LIKITTYAPGDMSL------ 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    ++  S +              + + + F   +  +  A+ V   +   
Sbjct: 56  ---IESRVTKKIEDEVSTIDGIKKIRSYTFNNLSIVMVEFNLKKNIDVAANDVRDKVAKA 112

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                    +  +         +     +       A+ Q+  +  +    +   +   +
Sbjct: 113 KLD-----AQPEIEKINSDSGKVASFFVSRKDENLTALMQA--VKDEAKPFLQRVKGVGK 165

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  ++    DP +L +   T A +       N                      
Sbjct: 166 VDDKGFLEPEIKIYLDPFKLDKYALTAASVINIIKSQNLKAPLGKLEN------------ 213

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                       +        +     V    +    +  F      +           +
Sbjct: 214 ------------SEFEIFLKSEFDAKSVRELEEIRLQKDVFLKDVARVELSHHDTDAVAM 261

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         +  +   TI+        L A                + L   +  
Sbjct: 262 YNGKRGVLLDAIKVSGANTIETIDALKAKTDDLAARLGENYEVERVYEKSESILKHINQV 321

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K    +   L ++++F  +      ++A  +I  +++ T  ++ +LG  L   ++  + L
Sbjct: 322 KFDMMLGVALTVVIVFFFLRSFSATVIAALAIPASIVGTFFIIDVLGFDLNRLTLLALTL 381

Query: 423 GIGLAVDSNILVNERIREENRKNQSV--FCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           GIG+ +D  I+V E I ++ ++ +S     S +     A+S +  S +   +   + F  
Sbjct: 382 GIGIFIDDAIVVVENISKKMQEGESNPLKASFEGVREIAFSVLSISAVLLCVFVPIAFME 441

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G     F +++   I++S    I ++ ++    +   K K   +       L     
Sbjct: 442 GIVGQYFNSFGMSVSGGIVVSFLVCIMLIPSLAARFLNEGKSKFYRVTEPFFEMLESGYE 501

Query: 539 AIQFMRARFWGVGISIL---FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
            +  +  RF    + +     ++C             ++ +G  ++ + A+  + +  + 
Sbjct: 502 RLLKLILRFKTAFVILTLGVLALCMSLAGKVGMDFLPVEDEGQFEIFLKASPGISVEAMS 561

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +    +     S  + +           +          L+  + +      +      +
Sbjct: 562 ARASEVVREVDSDPHVEYSYMIAGYTDSKDAYKAKIYVRLKGFESRKERQTQIMDEYRKK 621

Query: 656 IVGPKISRELIR 667
           +    +S ++++
Sbjct: 622 LKFDDLSVKVLQ 633



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/257 (14%), Positives = 87/257 (33%), Gaps = 7/257 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS-VAQTRVLEMVKK 640
            +   + V L  V     S    D            L  ++    ++      +      
Sbjct: 234 EIRLQKDVFLKDVARVELSHHDTDAVAMYNGKRGVLLDAIKVSGANTIETIDALKAKTDD 293

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               +     ++        I + + +     ++  A+ ++I  +    +   + A   +
Sbjct: 294 LAARLGENYEVERVYEKSESILKHINQVKFDMMLGVALTVVIVFFFLRSFSATVIAALAI 353

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
              I  T     + G + N   + A+   IG  ++D +VV + + K M+   +  +    
Sbjct: 354 PASIVGTFFIIDVLGFDLNRLTLLALTLGIGIFIDDAIVVVENISKKMQEGES--NPLKA 411

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF-AIPMAF--GIVVAASSSIFIAA 817
             + + E     +  S       +P+A   G V   F +  M+   GIVV+    I +  
Sbjct: 412 SFEGVREIAFSVLSISAVLLCVFVPIAFMEGIVGQYFNSFGMSVSGGIVVSFLVCIMLIP 471

Query: 818 PILL-FIYDWRAKNARI 833
            +   F+ + ++K  R+
Sbjct: 472 SLAARFLNEGKSKFYRV 488



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 664 ELIRKGIVGVIISAIAMLIYI---WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
                      IS   +LIY+    +   +   L  + ++ L          L G  F+L
Sbjct: 828 MNDTNAAFVFTISLSVVLIYMILAALYESFVLPLIIMISMPLAFGGVAVGLYLSGNSFSL 887

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +   + L G    + ++V D      +     +   + I ++  + L   + T+ A  
Sbjct: 888 FVMVGAILLFGMVGKNAILVVDFAN---RYANEGVELNEAIVRAGVKRLRAILMTTFAMI 944

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            ++LP+A+  G+     + PMA  ++  
Sbjct: 945 FAMLPLALSRGAGYEGNS-PMAISVISG 971


>gi|223939654|ref|ZP_03631528.1| acriflavin resistance protein [bacterium Ellin514]
 gi|223891705|gb|EEF58192.1| acriflavin resistance protein [bacterium Ellin514]
          Length = 1040

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 88/641 (13%), Positives = 197/641 (30%), Gaps = 52/641 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    L+ L  ++   GL +A       S LD FP+ +P               + ++ 
Sbjct: 10  LKFRGVLIALSCVLLGYGLYVAA-----HSKLDVFPNFVPP-------------QVEIQT 51

Query: 61  DEDDFVNGFLQMYSD-ELRSFLKKEG---IGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +        +++     + + +   G          Q  + IT  F +          + 
Sbjct: 52  EAPGLSPEQVEVLVTRPIETTVNGLGGMDSLRSESIQGLSVITAVFKEGTDIFVARQMLA 111

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L  ++ +L V  K   +   T   + ++      D++    ++           ++  
Sbjct: 112 EKLNEISGQLPVSVKTPRMSPLTSATMDLLKIGLVSDKLT--PMQLRTLADWTVKPRLLS 169

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                + +     + ++     P RL     + + +              + G  F+ ++
Sbjct: 170 VPGVARCIVFGGQVREMQILAKPDRLSAYDLSISDVM-----NVAKLSTGVMGAGFVENA 224

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
           +    L  +   +S   L               V I      + R  +V     G    +
Sbjct: 225 NQRIVLQTEGQALSAEALG-------------EVVIVRTNGLSVRLKDVAEVKEGPEPKM 271

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                     V+        A          A +           + L     R      
Sbjct: 272 GDALIQGRPGVLMATASQYGANTMEVTLAVEAALREMQPIFDQEGVTLYSRLHRPATFIE 331

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    K +  +   LV +VLF+ + + +   ++  +I L+++  + LL   G TL   +
Sbjct: 332 VSLKNIKHSLYMGGILVGVVLFLFLGHFRTAFISLTAIPLSLLTAIILLDKFGITLNTIT 391

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITA 470
           + G+ + IG  VD  I+  E I    R+NQ      S F  +        S +  +    
Sbjct: 392 LGGLAIAIGEVVDDAIIDVENIFRRLRENQELAKPKSAFRVVLDASLEVRSAVVYATFVV 451

Query: 471 LIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            +  + +       G      A++   +I+ S+  A+++  A+ +         S +   
Sbjct: 452 ALVFLPVLTLTGLQGSFFAPLALSYVFAIMASLAVALTVTPALSLIFFAKGVRNSKEPRL 511

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-KGGIQLGVLAN 586
                     I     R     + +  +  I ++ +L   G  +  +F +G   LGV   
Sbjct: 512 QVWLKRFYGRIITSLARWPKVVMAVVGIVCIAAVLMLPHFGSEFLPEFREGHFVLGVQMI 571

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
               L  +    + +    +  +N    +  + R +     
Sbjct: 572 PGTSLQEMLKMGKEISDELLKNKNIATVEQQVGRAEQGEDT 612



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/167 (18%), Positives = 73/167 (43%), Gaps = 9/167 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +    + +++++     +  A  ++T + L +   +     FGI  N   +  +   IG 
Sbjct: 343 MGGILVGVVLFL-FLGHFRTAFISLTAIPLSLLTAIILLDKFGITLNTITLGGLAIAIGE 401

Query: 733 SVNDKVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            V+D ++    ++ R+R+N +L     +FR ++D S+ E     VY +    +  LP+  
Sbjct: 402 VVDDAIIDVENIFRRLRENQELAKPKSAFRVVLDASL-EVRSAVVYATFVVALVFLPVLT 460

Query: 789 ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                GS     A+   F I+ + + ++ +   + L  +    +N++
Sbjct: 461 LTGLQGSFFAPLALSYVFAIMASLAVALTVTPALSLIFFAKGVRNSK 507



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/246 (11%), Positives = 88/246 (35%), Gaps = 15/246 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L  + +    +            +  +P  +   +   E  K+ +++++         
Sbjct: 791  NQLAEVYLTTGRYSIMHDGARRRQVVTCKPEGADVTSFTAEARKQIVSKVMFPKGTYAVF 850

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                + + +  ++ ++   ISA+ ++I + I    +  L  I   +       G  A+F 
Sbjct: 851  SGAAEATAKAQQQLLLNSAISAVGIIILLGIVTGNWKNLLLILANV-PFALVGGILAVFL 909

Query: 716  IE---------FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
                         + ++   +TL G +  + +++       +++   + S    +    +
Sbjct: 910  TTYFGDPGEGGLTIGSLVGFVTLFGITTRNSIMMISHFEHLVQVEGMNWSLETALR-GAS 968

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVVAASSSIFIAAPILLF 822
            E L   + T++   + +LP+A+  G          AI +  G++ +   ++ +   + L 
Sbjct: 969  ERLIPILMTAIVTALGLLPLAIGSGEAGREIEGPMAIVILGGLITSTVLNLLVLPTLALR 1028

Query: 823  IYDWRA 828
               +  
Sbjct: 1029 FGRFSK 1034


>gi|254240951|ref|ZP_04934273.1| Resistance-Nodulation-Cell Division (RND) divalent metal cation
           efflux transporter CzcA [Pseudomonas aeruginosa 2192]
 gi|126194329|gb|EAZ58392.1| Resistance-Nodulation-Cell Division (RND) divalent metal cation
           efflux transporter CzcA [Pseudomonas aeruginosa 2192]
          Length = 1051

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/596 (10%), Positives = 150/596 (25%), Gaps = 62/596 (10%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  +G+         +  +D  P                 +++ ++++          
Sbjct: 16  VLLAVLGMAGVGIGSYQRLSIDAVPDI---------------TNVQVQINTAAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +    + + + L          R   +++T+ F +         +V   L     +
Sbjct: 61  VEQRITYPVETVMAGLPGLQETRSLSRPGISQVTVIFEEGTDIYFARQQVNERLSTAREQ 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH------AIEQSMEIIRQRIDQIGISES 179
           L  D    L   +T      + +    +             +           Q+   + 
Sbjct: 121 LPEDISPTLGPISTGLGEIYLWTVEAEEGATKEDGSAYTPTDLRTIQDWIIRPQLRNVKG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         Q     DP +L     T   +    +  N +        R  +     
Sbjct: 181 VAEINTIGGYAKQFLIAPDPKKLAAYKLTLGDLQNAVLRNNENVGAGYIERRGEQLLIRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+D  +I G                    I    +            +G    +   
Sbjct: 241 PGQVKDMDDIRG--------------------IIVSNVDGVPIRIRDVAEVGLGKELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +  G     +          I           + 
Sbjct: 281 AATENGREVVLGTVFMLIGENSREVAQAVGQRLEEINRTLPKGVKAITVYDRTTLVDKAV 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+ VLF+ +   +  L+    I L+++ T   +     +  L S+  
Sbjct: 341 ATVKKNLVEGAALVIAVLFLFLGNIRAALITATIIPLSMLFTFTGMVGNRVSANLMSLGA 400

Query: 420 IVLGIGLAVDSNILVNER-----IREENRKNQSVFCS-----LDMGFSRAYSTIFDSNIT 469
           +  GI   VD  +++ E         +    + +  +     +      A   +    I 
Sbjct: 401 LDFGII--VDGAVVIVENAIRRLAHAQAHHGRQLTRAERFHEVFAASREARRALVFGQII 458

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++  + +F      G      A T+  ++L +M  +++ V A +   I  K  +  +  
Sbjct: 459 IMVVYLPIFALTGVEGKMFHPMAFTVVTALLGAMILSVTFVPAAIALFITGKVKEEENFV 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                      +            G      +  +              +G   + 
Sbjct: 519 MRRARLAYEPALRWVLGHRALVVGGALGAILLTGLVASRMGSEFIPSLSEGDFAMQ 574



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+  GI  +++A    + L G +V + +V+   +R    L     S    +
Sbjct: 915  FALTGGVLALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIR---NLLQEGRSLDQAV 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 972  WEGAITRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTMLTLLVLPV 1031

Query: 819  ILLFIYDW 826
            +  + +  
Sbjct: 1032 LYRWTHGR 1039


>gi|312897346|ref|ZP_07756772.1| protein-export membrane protein SecD [Megasphaera micronuciformis
           F0359]
 gi|310621564|gb|EFQ05098.1| protein-export membrane protein SecD [Megasphaera micronuciformis
           F0359]
          Length = 410

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 76/168 (45%), Gaps = 4/168 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP + ++   K      I  + +++++ + ++    + A   L++ +   L       
Sbjct: 219 TIGPSLGQDSKDKSERAFAIGILLIMLFLVVVYRMS-GVVANVALLVYVLILLAILKYLD 277

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  +A ++  +G++V+  +++++R ++ + +     S R  +           +  
Sbjct: 278 ATLTLPGIAGIILSMGFAVDANILIFERFKEEVLV---GKSLRTSMHAGFKRAFSTILDA 334

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +++  I+ + +   G   +  FA+ +A GIVV+  ++I ++  +L + 
Sbjct: 335 NVSVMIAAIVLITMGAGTVKGFAVNLALGIVVSMFTAIVVSRSLLTWF 382



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 42  NRISLGLDLRGGSHLVLEV-DEDD--FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-K 97
             I  GLDL+GG+H+VLE  D  D    +  +      +   + + G+    +++  + +
Sbjct: 24  ESIKQGLDLQGGTHIVLEAQDTPDAPVTDDSVNRAVTIVERRINEMGLTEPIVQKEGSRR 83

Query: 98  ITLSFADSRFKENIADKVTLFL 119
           I +     +  E   + +    
Sbjct: 84  IIVELPGEKNPEKAIETIGKTA 105


>gi|308050205|ref|YP_003913771.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
 gi|307632395|gb|ADN76697.1| acriflavin resistance protein [Ferrimonas balearica DSM 9799]
          Length = 1014

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 82/665 (12%), Positives = 205/665 (30%), Gaps = 54/665 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++    + + +  +  +GL+           L+ +P                   +  + 
Sbjct: 12  LQRPVTVTMAFIAMLLLGLVAT-----RLLPLEMWPGLEIPQIT---------VQVPYQG 57

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E  + L           Q ++ I + F       +   +V   + 
Sbjct: 58  GSPEEVEREITSVLEESLATLSGVKRMRSGSSQSESWIRMDFNWDESIASKVVEVRERVD 117

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  D ++ +L   +  ++ I+  + +  + +S A +      +Q    +      
Sbjct: 118 SVRHLLPQDVERVMLWQFSTADMPILTLRLSSRRDLSGAWDLLD---KQLKRPLERLSGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +         ++    DP R+         +S      N                    
Sbjct: 175 SKVTLYGVQPQEIQIRLDPDRMIARGIDANWLSQQLQAQNFVISAGDLR----------- 223

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    +G  L   +   + ++ + + ++                ++      ++DG
Sbjct: 224 ---------TGSALWQISPKGEYQSVEAMRELVVRRG----VKLGEIADVQYRRPEMIDG 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE-RNVGADLGSD 359
           R L            ++  +     +    +   +RA      + +            S 
Sbjct: 271 RHLDRDYAVGLDVFKESGANLVEVADRVLAVVETVRAHPQFEGIELFVMDDQAAGVKSSL 330

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                   I AGL  +VLF+ +      L+   S+ L+V +TL  + L+G TL + S+ G
Sbjct: 331 KNLANAGLIGAGLSFLVLFLFLRNPLTTLIIVVSVPLSVAITLGAMYLMGYTLNILSMMG 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           ++L +G+ +D+ ++V+E + +++   +  F ++  G  +    +    +T  I  +   F
Sbjct: 391 LLLAVGMLIDNAVVVSESVLQQDP--KDRFNAVTNGVDKVALAVMAGTLTTAIVFLPNIF 448

Query: 480 ----FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                    +   AI++ LS+L S+  + +++  ++       +   +   P  R  L  
Sbjct: 449 GVKVQLTVFLEHVAISICLSLLASLLISRTLLPLLLYRFAHLGQKAKVARAPRYRKALSW 508

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF-----KGGIQLGVLANRPVD 590
                +        +  S    +  +        N    F     +G   L V     ++
Sbjct: 509 TLDHPKTSGLIAILLLASTALPVSQVTATDDDEGNDERLFINYNLEGRHSLQVT-EGMIN 567

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
                           S  ++    N    L  +      +  ++E V++   +      
Sbjct: 568 QMEEYLYANQEAFHIDSVYSYFSNDNLQTTLLLKTPLPEPRADLMERVREGFPKFAYARP 627

Query: 651 IQNTE 655
               +
Sbjct: 628 EFGWQ 632



 Score = 92.1 bits (226), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/223 (15%), Positives = 81/223 (36%), Gaps = 10/223 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           E            D      + E +   +  I        +     +   E     +  +
Sbjct: 775 EGRQTALAIGGNVDDRDLNELREEITALMDTIALPEGYSYSFGGSFQYQDESQALMVTNM 834

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +++   + I +   F+        I+ ++  IT     F L G   ++  +  +L L+G 
Sbjct: 835 LLAVAMIYIVMAALFESLLLPTAVISAILFSITGVFWTFMLTGTPMSIMGMIGILVLMGV 894

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---- 788
            VN+ +V+ D++    +   +    +D I ++ +  L   + T     + +LP+A+    
Sbjct: 895 VVNNGIVLVDQIN---QRQPSLEQMKDAIVEAASTRLRPVLMTVSTTILGLLPLALNDTR 951

Query: 789 --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              GG      A  +  G+  +  +S+F+   + L +   R +
Sbjct: 952 LAGGGPSYTPMAFAIIGGLAFSTLTSLFLVPYLYLMLCRLRHR 994



 Score = 52.4 bits (123), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 39/92 (42%), Gaps = 5/92 (5%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  + ++ L +  TLG   L G   N+ ++  +L  +G  +++ VVV + +     L   
Sbjct: 359 LIIVVSVPLSVAITLGAMYLMGYTLNILSMMGLLLAVGMLIDNAVVVSESV-----LQQD 413

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
                + +   +++     +  ++   I  LP
Sbjct: 414 PKDRFNAVTNGVDKVALAVMAGTLTTAIVFLP 445


>gi|229015236|ref|ZP_04172271.1| hypothetical protein bmyco0001_55820 [Bacillus mycoides DSM 2048]
 gi|228746038|gb|EEL96006.1| hypothetical protein bmyco0001_55820 [Bacillus mycoides DSM 2048]
          Length = 700

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 64/524 (12%), Positives = 169/524 (32%), Gaps = 65/524 (12%)

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT--LTLPSIAGI 420
                 V    +++ F  V +   GL    +I    I  L ++         ++      
Sbjct: 142 MTEIVGVLVAFVVLAFTFVSFLVAGLPILTAIIGLAIGMLGIMIGTNYVEIQSVSLSLAA 201

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +LG+ + +D  + +  R R++  +  SV  S+ +    A S +  + +T +I  + L   
Sbjct: 202 MLGLAVGIDYALFIINRFRQQLAQGDSVPESVAIATGTAGSAVIFAGLTVIIGLLGLSVT 261

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
               +    ++   ++L ++  ++ I+ A++  +         +                
Sbjct: 262 KIPFLTAMGVSAAFTVLAAVLVSVIILPAILGLVGHKIAPSKQNRFLQKMTGAGKKHAGS 321

Query: 541 QFMR---ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV-------- 589
                   R   +       + ++  +    +N G+   G  +      R          
Sbjct: 322 NKWGEFVIRRPLIVTIFAIGLLAVISIPFFHMNLGLPSDGTTKSTETTERRAYDLLTEAY 381

Query: 590 --------------------------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
                                      ++    NL  ++    +     G+   +     
Sbjct: 382 GEGFHASLMVVAKSEEATAETQNAMNTIAKELGNLPDVKSVTPAIPGPSGKIYMISITPK 441

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG------IVGVIISA 677
              D      +++ ++ K  +    + I+        ++ ++++K          +I+  
Sbjct: 442 TGPDDTKTKDLVKAIRDKSNQTEKKNEIELMVTGTAAMNIDIVQKLSDALPVFAALIVGL 501

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA----------LFGIEFNLTAVA--- 724
             +L+ +  R      L A+   +L +  TLG             +FG       +A   
Sbjct: 502 AYVLLVLVFR-SLLIPLKAVLGFLLSLGATLGAVVFFVQDGHFQNIFGFPAAGPILAFLP 560

Query: 725 --AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
              +  L G +++ +V +  +MR+   +YT +   +  I + + E+    V   +     
Sbjct: 561 VILIGILFGLAMDYEVFLVSKMRE---VYTHTGDPKRAILEGMRESGRVVVAAGLIMMSV 617

Query: 783 VLPMAVWGGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYD 825
            +   +   ++I S  + + FG+   A    + I   +++ +  
Sbjct: 618 FIGFMLAPDTIIKSIGMALTFGVFFDAFIVRMTIVPAVMILMGK 661



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 79/242 (32%), Gaps = 8/242 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V   + + +        +  QN   +K     +      +   T   +       E    
Sbjct: 61  VLEEIKKDSAVDSVAAPMQLQNLSEDKTIGYAVVTYKVKAEKVTEASKDKLLDSIETTRD 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK- 706
           + IQ     G     +    G+  ++   +A  + +   F  +  A   I T I+ +   
Sbjct: 121 AGIQTELSGGDVTFSDSETSGMTEIVGVLVA-FVVLAFTFVSFLVAGLPILTAIIGLAIG 179

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGY--SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
            LG           +   ++  ++G    ++  + + +R R+ +       S  + +  +
Sbjct: 180 MLGIMIGTNYVEIQSVSLSLAAMLGLAVGIDYALFIINRFRQQLAQ---GDSVPESVAIA 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                   ++  +   I +L ++V     + +  +  AF ++ A   S+ I   IL  + 
Sbjct: 237 TGTAGSAVIFAGLTVIIGLLGLSVTKIPFLTAMGVSAAFTVLAAVLVSVIILPAILGLVG 296

Query: 825 DW 826
             
Sbjct: 297 HK 298


>gi|127512576|ref|YP_001093773.1| acriflavin resistance protein [Shewanella loihica PV-4]
 gi|126637871|gb|ABO23514.1| acriflavin resistance protein [Shewanella loihica PV-4]
          Length = 1015

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 77/669 (11%), Positives = 193/669 (28%), Gaps = 47/669 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 + +  I   GL  +         L+ FP       +           +  +   
Sbjct: 10  RPVTTSMFFVAILLFGLASS-----RLLPLEMFPGIEMPQVL---------IEVPYKGST 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E  + +           Q   +I L           + +    +  V
Sbjct: 56  PAEVEREITNVLEESLATMGGIEELRSRSSQNGAEIELRMKWGENVSTKSLEAREKVDAV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D ++  +   +  ++ ++  + + ++ +S A +      +Q    +   E   Q
Sbjct: 116 RHLLPKDVERVFIRQFSTADMPVLTIRISSERELSGAFDLLD---KQLKKPLERVEGVSQ 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+    D  +L     ++A +       N                   +  
Sbjct: 173 VTLYGVEQKQIEIRIDADKLSATGISSAMLQQRLGQENFIVSAGTLRANTRVYQVSPKGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D  +I+ + L                                   I   L   LDGR 
Sbjct: 233 FRDLDDIAALVLI------------------------PGVTLGDVATIRYALPERLDGRH 268

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE-RNVGADLGSDSI 361
           L            ++  +     E    +    +       + +            S S 
Sbjct: 269 LDQKYAVGLDVFKESGANLVDVSERVLKVIEAAKQDQQFNGIKLFIMEDQAYGVKSSLSD 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L   VL++ +   K  LV   S+ +++ +TLA +  LG +L + S+ G++
Sbjct: 329 LLAAGLIGALLSFAVLYLFLRNLKMTLVVVSSVPISLCMTLAGMYFLGYSLNILSMMGLL 388

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           L +G+ +D+ ++V+E + +E +     +   ++  G ++    +    +T  I  +   F
Sbjct: 389 LAVGMLIDNAVVVSESVLQEKQHQGTATTSQAVLTGVNKVALAVLAGTLTTAIVFLPNIF 448

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM---KSIDINPLSRFFLIPD 536
                +  F   + ++I IS+  ++ + + ++  ++         +   + L  F+    
Sbjct: 449 GVKVELTIFLEHVAIAICISLAASLLVAKTLIPLMLTKLHFEIETNPKQSKLESFYERSL 508

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
              +   +       + +  +   + ++     +   + +  I   V     +D++    
Sbjct: 509 AWILHRPKRSGLIAVVILASTALPLSMVQQDQNDGEGNNRLYINYQVEGRHSLDVTEAMI 568

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           N     +       +                 + Q      +K    +I       +   
Sbjct: 569 NRMEDYLYANKEAFYIDSVYSYFSADRGQSTLLLQEDADIDIKALKRKIREGFPKFSIAK 628

Query: 657 VGPKISREL 665
                  + 
Sbjct: 629 PQFGWGNDN 637



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 76/211 (36%), Gaps = 14/211 (6%)

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
           +     AQ  + +++           +++       +    +    I+ +      + I 
Sbjct: 790 EMTTEEAQKAIKQVMDAVQFPAGYGYSLRGGFQRQDEDQAIMATNMILAI----AMIYIV 845

Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           +   F+        IT+++  IT       L G   ++ A+  +L L+G  VN+ +V+ D
Sbjct: 846 MAALFESLLLPTAIITSILFSITGVFWALLLTGTSMSIMAMIGILILMGIVVNNGIVLVD 905

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIGS 796
           ++ +         +    +       L   + T     + ++P+A+       GG     
Sbjct: 906 QINQKTPELDRLSATIKAVCI---TRLRPVLMTVGTTVLGLIPLAMGDTQIGGGGPPYSP 962

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            AI +  G+  +  +S+++       +Y  R
Sbjct: 963 MAIAIIGGLSFSTLTSLYLVPLCYQALYRMR 993



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 88/238 (36%), Gaps = 4/238 (1%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ +R  L     G    Q +    +          D   +  +  +   K  +     
Sbjct: 252 DVATIRYALPERLDGRHLDQKYAVGLDVFKESGANLVDVSERV-LKVIEAAKQDQQFNGI 310

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            +   E     +   L      G+I + ++  +           L  ++++ + +  TL 
Sbjct: 311 KLFIMEDQAYGVKSSLSDLLAAGLIGALLSFAVLYLFLRNLKMTLVVVSSVPISLCMTLA 370

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
                G   N+ ++  +L  +G  +++ VVV + + +  K +  + +    +   +N+  
Sbjct: 371 GMYFLGYSLNILSMMGLLLAVGMLIDNAVVVSESVLQE-KQHQGTATTSQAVLTGVNKVA 429

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV-IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +  ++   I  LP  ++G  V +  F   +A  I ++ ++S+ +A  ++  +   
Sbjct: 430 LAVLAGTLTTAIVFLP-NIFGVKVELTIFLEHVAIAICISLAASLLVAKTLIPLMLTK 486


>gi|313107615|ref|ZP_07793800.1| heavy metal efflux pump, CzcA family [Pseudomonas aeruginosa 39016]
 gi|310880302|gb|EFQ38896.1| heavy metal efflux pump, CzcA family [Pseudomonas aeruginosa 39016]
          Length = 1039

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/557 (11%), Positives = 147/557 (26%), Gaps = 49/557 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L  +M+   G+       +  + +D  P       I                  
Sbjct: 12  NRFLVLLATAMLTAWGVW-----GVRSTPVDALPDLSDVQVI---------IRTNYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGFSFFGDSFVYVLFEDGTDLYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    K  L    T                 +   +           ++    +  +
Sbjct: 118 QGRLPATAKPALGPDATGVGWIFQY-ALVDRTGKNDLAQLRALQDWFLKFELKSLPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L     + A++    +                     NQ  
Sbjct: 177 VASVGGMVKQYQVVLDPIKLASYGLSQAQVRDALMA-------------------ANQET 217

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +E+SG       + +     +          G              P        +
Sbjct: 218 GGSVLELSGAEYMVRASGYLKTLDEFREIPLTARGGVPVRLGDVATLQIGPEMRRGIAEL 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI       A L+    P    +           +    
Sbjct: 278 DGEGEVAGGVVVLRSGKNAQETIAAVKAKLAELQGSLPPGVEIVTTYDRSALIERAIRNL 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  S+ L V+    ++   G    + S+ GI +
Sbjct: 338 TTKLGEEFLVVALVCALFLWHLRSALVAIISLPLGVMTAFLVMRYQGINANIMSLGGIAI 397

Query: 423 GIGLAVDSNILVNERIR-----------EENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            +G  VD+ +++ E              ++  + +  +  +          +F S +   
Sbjct: 398 AVGAMVDAAVVMIENAHKKLEAWQHAHPDQRLQGKERWDVITQAAEEVGPALFFSLLIIT 457

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++  +   +++++  +M + IR +          
Sbjct: 458 LSFIPVFTLEAQEGRLFGPLAFTKTYAMAAAAGLSVTLIPVLMGYWIRGRIPDEQKNPIT 517

Query: 529 SRFFLIPDCIAIQFMRA 545
                         +R 
Sbjct: 518 RILIAAYRPALEWVLRR 534



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 89/282 (31%), Gaps = 14/282 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L  V     +     +  +N     
Sbjct: 762  LARFPINLRYAREWRDSPQRLAELPIFTPMGQQITLGTVARIAITDGPPMLKSENARPSG 821

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V ++ +   SVA      + ++   E     T         + +  L     V V  
Sbjct: 822  WVYVDVRGRDLASVANELRDAIGQQVKLEPGVSITYSGQFEYMERANARLK----VVVPA 877

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + + +++ F +   A   + TL   +T  + F  L     ++      + L G + 
Sbjct: 878  TLLIIFVLLYLTFARVDEAGLIMATLPFALTGGIWFLYLLNYNLSIATGVGFIALAGVAA 937

Query: 735  NDKVVVYDRMRKNMKL------YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
               VV+   +++ +          T     D I +     +     T       ++P+  
Sbjct: 938  EFGVVMLIYLKQALAERCPDGRNPTREELLDAIREGAVLRVRPKAMTVAVILAGLVPIVW 997

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                G  V+   A PM  G+V A   S+F+     L +   R
Sbjct: 998  SSGTGSEVMSRIAAPMLGGMVTAPLLSLFVIPAAYLLMRKPR 1039


>gi|149190287|ref|ZP_01868561.1| putative silver efflux pump [Vibrio shilonii AK1]
 gi|148835894|gb|EDL52857.1| putative silver efflux pump [Vibrio shilonii AK1]
          Length = 1039

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 73/666 (10%), Positives = 172/666 (25%), Gaps = 40/666 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV++ +    +  L ++ N    + +D  P       I                  
Sbjct: 11  NNRFLVLVATCFLTLAGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    K  L    T                     E           ++       +
Sbjct: 118 APNLPSQAKPTLGPDATGVGWIYSYV-LQDKTGNHDLAELRSIQDWFLKYELQTVAGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP++LR    T  +++      N      +  V            
Sbjct: 177 VATVGGMVKQYQVQIDPAKLRAYDLTLQQVNSAIKNGNQESGASVIEVAEAEHMVRTTGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                    + +     G         D    P         
Sbjct: 237 LTSIDDIKA------------------LPLKVTSKGTPLLLGDIADIDLGPQMRRGISEF 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   + +  I+        L+ G       +           +    
Sbjct: 279 NGEGEAVGGVIVMRFGENASEVIDNVKAKLEELQRGLPVGVEIVPTYDRSTLINAAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
               A    +V IV  + + + +  +V   S+ + ++    ++   G    + S+ GI +
Sbjct: 339 WKKLAEEFIVVAIVCALFLFHIRSSIVIAISLPVGILSAFIVMHWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   K    +++ +  +        + +F S +   ++ V +F
Sbjct: 399 AIGAMVDGAIVMIENVHKHIEKTPLTDKNRWQIIGKAAEEVGAPLFFSLLIITLSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   AI++V  +M + IR K +             + 
Sbjct: 459 ALQGQEGKMFSPLAYTKTYAMAAAAGLAITLVPVLMGYFIRGKVLPEHKNPVNKGLIALY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICL-LFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
             +    +R     + +++     +                +G +         + +   
Sbjct: 519 RPMLNLSLRFPKTMIVLALGLMASAYYPASKLGSEFIPPLDEGDLMYMPTTYPGISIGKA 578

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R  L+       +          + R +     +        +  K   +     T ++ 
Sbjct: 579 RELLQQTNKLIKTVPEVKSVWGKIGRAETATDPAPLTMIETTIQLKPREQWREGVTTESL 638

Query: 655 EIVGPK 660
                 
Sbjct: 639 RKEFDD 644



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/213 (11%), Positives = 72/213 (33%), Gaps = 5/213 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              D+ +       +   +   +   G                 + ++ E+ +     + 
Sbjct: 261 DIADIDLGPQMRRGISEFNGEGEAVGGVIVMRFGENASEVIDNVKAKLEELQRGLPVGVE 320

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            + T   + ++   +     +     ++++ +  L      F    ++    +L + I  
Sbjct: 321 IVPTYDRSTLINAAVENLWKKLAEEFIVVAIVCAL----FLFHIRSSIVIAISLPVGILS 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSI 765
                   GI  N+ ++  +   IG  V+  +V+ + + K+++    +   R  +I K+ 
Sbjct: 377 AFIVMHWQGINANIMSLGGIAIAIGAMVDGAIVMIENVHKHIEKTPLTDKNRWQIIGKAA 436

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            E      ++ +   +S +P+    G     F+
Sbjct: 437 EEVGAPLFFSLLIITLSFVPVFALQGQEGKMFS 469



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 79/286 (27%), Gaps = 18/286 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +       +     + L       + L+ V           I  +N     
Sbjct: 756  LERYPINVRYPQDYRDSVVKLQNLPLVTPNGARIALADVADIRYEDGPPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        +  +                   +  + L    +V V +
Sbjct: 816  WVFVDIAERDLGSYVTEAQRVVADQLELPAGYSLAWSGQYEYMERAKQRL--SVVVPVTL 873

Query: 676  SAIAMLIYIWIR-FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + I +L+Y+  R F   F +     L +     L         F++      + L G +V
Sbjct: 874  AIIMLLLYLSFRRFGEVFVIMGTLPLAMVGG--LWLMHYLNYNFSIAVGVGFIALAGVAV 931

Query: 735  NDKVVVYDRMRK----------NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
               V++   + +                T     D I +     +   + T +   I ++
Sbjct: 932  EIGVIMLVYLNQAWHAAKLSAQESNKKVTPEMLTDAIREGAGLRVRPVMMTVLTVIIGLI 991

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            P+      G  V+   A PM  G+  A   ++ +   I        
Sbjct: 992  PIMYGSGTGSEVMQRIAAPMIGGMASALLLTLLVLPAIFKLWKSKE 1037


>gi|329122908|ref|ZP_08251479.1| RND superfamily acriflavin/drug:proton (H+) antiporter [Haemophilus
           aegyptius ATCC 11116]
 gi|327471839|gb|EGF17279.1| RND superfamily acriflavin/drug:proton (H+) antiporter [Haemophilus
           aegyptius ATCC 11116]
          Length = 961

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 15  RRPVLAVSISLLMIILGL-----QAISKLAVCEYPKMTTTV-------------ITVSTA 56

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 57  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 116

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 117 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 174 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 234 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKESD 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 274 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 334 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 394 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 453

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 454 ALMGGITGTLFKEFALTLAGAVFISGIVALTLSPMMSSKLLKSNAKPTW 502



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 307 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 364 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 420

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 421 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGI 480

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 481 VALTLSPMMSSKLLKSNAKP 500



 Score = 38.1 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 26/199 (13%), Positives = 65/199 (32%), Gaps = 14/199 (7%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 770 LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGTSSGDAIAWLQQQAND 829

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
            + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 830 NLPQ-GYTYDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 884

Query: 700 LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           + L +         L FF++ G   N+ +   ++TL+G      +++ +  ++       
Sbjct: 885 VPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEE--QLNH 942

Query: 754 SISFRDLIDKSINETLGRS 772
             +  + I  +    L +S
Sbjct: 943 GKTRIEAITHAAKVRLRQS 961


>gi|170724559|ref|YP_001758585.1| CzcA family heavy metal efflux protein [Shewanella woodyi ATCC
           51908]
 gi|169809906|gb|ACA84490.1| heavy metal efflux pump, CzcA family [Shewanella woodyi ATCC 51908]
          Length = 1044

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 71/571 (12%), Positives = 157/571 (27%), Gaps = 45/571 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           ++I+  MI   G+       L  + LD  P       I                     V
Sbjct: 16  VLIITIMITVWGI-----QELRNTPLDALPDLSDVQVI---------IKTPFPGQAPKLV 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +          +              + + + F D         +V  +L  V+S+L
Sbjct: 62  EEQVTYPLSTAMLAVPGAKTVRGYSFFGDSYVYVIFEDGTDIYWARSRVLEYLNQVSSRL 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
               + +L    +                     +           ++       +    
Sbjct: 122 PQGVQPSLGPDASGVGWIFEY-ALVDRSGNLDLSQLKSLQDWYLKLELQTVAGVSEVATV 180

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +        +P +L       A +       N    G +  +         +   +  
Sbjct: 181 GGMEQTYQIVIEPDKLAIYKLDIASIKNAIAKSNTEAGGSVIEMAEAEYMVRAKGYRQTL 240

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +   I L   + +      K V  +       R   E+  +                  
Sbjct: 241 DDFREIPLGITSPSGTGLLLKDVATVRKGPASRRGIAELDGE-----------------G 283

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   I   +   +   TIE        L++G       I           S        
Sbjct: 284 EVVGGIIVMRYGENALATIEAVKTKLEQLKSGLPEGVEIITTYDRSQLIESSVENLFHKV 343

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V +V  + +L+ +  LVA  ++ L +++   +++ +G    + S+ GI + IG 
Sbjct: 344 IEEMFVVGLVCLLFLLHARSTLVAVITLPLAILIAFIVMNKMGVNANIMSLGGIAIAIGA 403

Query: 427 AVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            VD  I++ E + +              N   +  +          +F S +   ++ V 
Sbjct: 404 VVDGAIVMIENMHKHLEHFREKNNRSPNNIEHWKIVSEASIEVGPALFFSLVIITLSFVP 463

Query: 477 LF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   ++  +   +I++V  +M F I+ K  K            
Sbjct: 464 VFALEAQEGRLFSPLAYTKTFAMAAAAVLSITLVPILMGFFIKGKIPKESSNPISRFLIA 523

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLL 564
           I        ++     + ++++  + +   L
Sbjct: 524 IYKPSLTLVLKFPKMTLVVALIALMSAWYPL 554



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 80/245 (32%), Gaps = 10/245 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             NL  ++I D +          +  +      +     + +      +E+V         
Sbjct: 799  RNLADIEITDGAPMLKSENGRLISWVFVDIEGTSIGEYIEQAKTALDSELVVPPRYSYVF 858

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +  + +  K    + ++   + I + + F     A   + +L   +  +     L 
Sbjct: 859  AGQYEYMQRVDAKLQKVIPMALGVIFILLMLTFGSTLQATIIMMSLPFALVGSTWLLYLL 918

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINET 768
                ++     ++ L G +    VV+        + RK    Y      ++ + +     
Sbjct: 919  EFNMSVAVAVGMIALAGVAAEFGVVMLVYLNNAIKHRKESGGYEAVSDLKEALIEGAVMR 978

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +     T    F  +LP+      G  V+   A PM  G+V A   S+F+   + L IY 
Sbjct: 979  IRPKAMTVATIFFGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPLLSLFVLPALYLLIYS 1038

Query: 826  WRAKN 830
             + K 
Sbjct: 1039 RKLKK 1043



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 78/229 (34%), Gaps = 15/229 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + E V + T  +   +       L  K I  
Sbjct: 287 GGIIVMRYGENALATIEAVKTKLEQLKSGLPEGVEIITTYDRSQLIESSVENLFHKVIEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             ++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MFVVGLVCLLFLLHAR----STLVAVITLPLAILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRM-------RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + M       R+       +I    ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENMHKHLEHFREKNNRSPNNIEHWKIVSEASIEVGPALFFSLVIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           P+          F   A    F +  AA  SI +   ++ F    +   
Sbjct: 463 PVFALEAQEGRLFSPLAYTKTFAMAAAAVLSITLVPILMGFFIKGKIPK 511


>gi|313107416|ref|ZP_07793607.1| Resistance-Nodulation-Cell Division (RND) divalent metal cation
           efflux transporter CzcA [Pseudomonas aeruginosa 39016]
 gi|310880109|gb|EFQ38703.1| Resistance-Nodulation-Cell Division (RND) divalent metal cation
           efflux transporter CzcA [Pseudomonas aeruginosa 39016]
          Length = 1051

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 62/596 (10%), Positives = 151/596 (25%), Gaps = 62/596 (10%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  +G+         +  +D  P                 +++ ++++          
Sbjct: 16  VLLAVLGMAGVGIGSYQRLSIDAVPDI---------------TNVQVQINTAAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +    + + + L          R   +++T+ F +         +V   L     +
Sbjct: 61  VEQRITYPVETVMAGLPGLQETRSLSRPGISQVTVIFEEGTDIYFARQQVNERLSTAREQ 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH------AIEQSMEIIRQRIDQIGISES 179
           L  D    L   +T      + +    +             +           Q+   + 
Sbjct: 121 LPEDISPTLGPISTGLGEIYLWTVEAEEGATKEDGSAYTPTDLRTIQDWIIRPQLRNVKG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         Q     DP +L     T   +    +  N +        R  +     
Sbjct: 181 VAEINTIGGYAKQFLIAPDPKKLAAYKLTLGDLQNAVLRNNENVGAGYIERRGEQLLIRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+D  +I G                    I    +            +G    +   
Sbjct: 241 PGQVKDMDDIRG--------------------IIVSNVDGVPIRIRDVAEVGLGKELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +  G     +          I           + 
Sbjct: 281 AATENGREVVLGTVFMLIGENSREVAQAVGQRLEEINRTLPKGVKAITVYDRTTLVDKAV 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+ VLF+ +   +  L+    I L+++ T   +     +  L S+  
Sbjct: 341 ATVKKNLVEGAALVIAVLFLFLGNIRAALITATIIPLSMLFTFTGMVGNRVSANLMSLGA 400

Query: 420 IVLGIGLAVDSNILVNER-----IREENRKNQSVFCS-----LDMGFSRAYSTIFDSNIT 469
           +  GI   VD  +++ E         +    + +  +     +      A   +    I 
Sbjct: 401 LDFGII--VDGAVVIVENAIRRLAHAQAHHGRQLTRAERFHEVFAASREARRALIFGQII 458

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++  + +F      G      A T+  ++L +M  +++ V A +   I  K  +  +  
Sbjct: 459 IMVVYLPIFALTGVEGKMFHPMAFTVVTALLGAMILSVTFVPAAIALFITGKVKEEENFV 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                      +            G      + ++              +G   + 
Sbjct: 519 MRRARLAYEPALRWVLGHRALVVGGALGAILLTALVASRMGSEFIPSLSEGDFAMQ 574



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+  GI  +++A    + L G +V + +V+   +R    L     S    +
Sbjct: 915  FALTGGVLALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIR---NLLQEGRSLDQAV 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 972  WEGAITRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTMLTLLVLPV 1031

Query: 819  ILLFIYDW 826
            +  + +  
Sbjct: 1032 LYRWTHGR 1039


>gi|312792815|ref|YP_004025738.1| protein-export membrane protein secd [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179955|gb|ADQ40125.1| protein-export membrane protein SecD [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 415

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 28/165 (16%), Positives = 71/165 (43%), Gaps = 4/165 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            +GP +  E  +  +   II  I + +++ I ++    L A   L+  +   +       
Sbjct: 230 AIGPSLGNEAYKTTLKACIIGLILVFLFMIIFYRLP-GLIADIALVAYVVILVAIVGYAK 288

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I   L  +A ++     +V+  ++++ R+++ ++      + R  +D      L   + +
Sbjct: 289 ITLTLPGIAGIVLSAAMAVDANILIFARLKEELR---NGKTLRAAMDAGFRRALNAVIDS 345

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++   I+ + +   G   +  FA  +  GIVV+  ++I +   +L
Sbjct: 346 NVTTIIAGIVLLFLGTGPVKGFAWTLTIGIVVSFFTAITVTRFLL 390



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 123/407 (30%), Positives = 213/407 (52%), Gaps = 28/407 (6%)

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
              +K +      K    ++ +   +      +E ++++IR R+D     ++T    GS 
Sbjct: 35  PSVQKVIRYGLDLKGGVYIVYEAAKENPTRREMESALQLIRTRLDMRNFYDATATIQGSK 94

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
           RI +++PG +DP    Q +G TA + F                                +
Sbjct: 95  RIRVEIPGVKDPDEAIQYIGRTALIEF--------------------------KGPSGDL 128

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
            +SG ++    A         VV + FD+ G ++F E T+  +G+ + + LDG++++ P+
Sbjct: 129 IVSGRNVVD--AYAQQTASGYVVALKFDKEGTKKFAEGTKKYLGQNIGIYLDGKLISNPI 186

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +   I +G+A I G   +E A  LA  ++AG+LP  L ++E + +G  LG+++      A
Sbjct: 187 VRAEIDNGEAIIEGMKDLEEAKTLAQQIKAGALPFALKVIESKAIGPSLGNEAYKTTLKA 246

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
            + GL+L+ LFMI+ Y   GL+AD ++   V++ +A++     TLTLP IAGIVL   +A
Sbjct: 247 CIIGLILVFLFMIIFYRLPGLIADIALVAYVVILVAIVGYAKITLTLPGIAGIVLSAAMA 306

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRG 487
           VD+NIL+  R++EE R  +++  ++D GF RA + + DSN+T +IA +VL F G G V+G
Sbjct: 307 VDANILIFARLKEELRNGKTLRAAMDAGFRRALNAVIDSNVTTIIAGIVLLFLGTGPVKG 366

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           FA T+ + I++S FTAI++ R ++  II     K I      +   +
Sbjct: 367 FAWTLTIGIVVSFFTAITVTRFLLTSIINTGLFKDIRWYGGKKTREV 413



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 19/121 (15%), Positives = 40/121 (33%), Gaps = 6/121 (4%)

Query: 1   MRNNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE 59
           M+N      L   +I      I       +      PS   +  I  GLDL+GG ++V E
Sbjct: 1   MQNKSLAKFLIGCLIIAFAFYIVFFGL--EIGTASIPSV--QKVIRYGLDLKGGVYIVYE 56

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLF 118
             +++     ++     +R+ L        +     + +I +     +  +     +   
Sbjct: 57  AAKENPTRREMESALQLIRTRLDMRNFYDATATIQGSKRIRVEIPGVKDPDEAIQYIGRT 116

Query: 119 L 119
            
Sbjct: 117 A 117


>gi|312881515|ref|ZP_07741301.1| acriflavin resistance protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370792|gb|EFP98258.1| acriflavin resistance protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 1023

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 75/664 (11%), Positives = 186/664 (28%), Gaps = 55/664 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++  +  +L   I  +G++        +  +  FP     +            +  +   
Sbjct: 10  KHPVFATVLSIAIVLLGMVS-----YQKLSVQYFPERHTASA---------NVNASITGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRF---KENIADKVTLF 118
             +F++  +        + L K      + ++    + + F D        ++ + +   
Sbjct: 56  SAEFMSQNVAQVLINSIAGLDKVKTMTTNCKEGSCSLKIKFEDGIDDVEYTSLMNNLRSK 115

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIV-LSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
           ++G+N        K  +   +        +             E    I +Q + Q    
Sbjct: 116 VEGINDFPPAMTDKPTVTDDSSDTAMPSNIITFVNKNGKMSKQEMYDFISQQLVPQFKNV 175

Query: 178 ESTIQRL-GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                           +    +P R+  L  + A +       N +             S
Sbjct: 176 SGVGGVWGPYGGSKRAVRVWLEPERMAALNVSAADVVSTLSTYNTTFTAGTIKGEIRDFS 235

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V    ++  + +     N         V +     G         +  G     
Sbjct: 236 INPVNQVTSTKDVRDLVIRVDNDNIIRIKDVADVKM-----GEESLEPSQLEVNGHTAMS 290

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
           +      +   +  A    KA  +                          +         
Sbjct: 291 LQVLPFKSENPVTVAHHVKKAMETM----------------QLPADLEMKMVYNQADFIQ 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +      T      LV  ++ + +   +  ++   +I + VI   A++++LG ++ + +
Sbjct: 335 KAIDDSFMTLLEAIVLVSAIVVLFLGSLRVAIIPLITIPVCVIGVFAVMAMLGFSINVLT 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           I  I+L IGL VD  I+V E          S   +           +    +T  +  + 
Sbjct: 395 ILAIILAIGLVVDDAIVVVENCYRHIENGLSPIQAAMTSAKEIVFPVIAMTLTLAVVYLP 454

Query: 477 LFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-----KMKSIDINPL 528
           +    G      R FA T+  ++++S F A+++   M  ++++ K         ++    
Sbjct: 455 IGLMSGLTADLFRQFAFTLAAAVILSGFVALTLSPMMSAYLLKPKGSGAAWFVWVESKLN 514

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +   F R R        L  +  + +     +    +  G I++       
Sbjct: 515 QLTDNYVILLKNWFERPRIVLATTFGLILLSMVAVWLIPKVLLPTEDTGFIEVTSTPPAG 574

Query: 589 V-------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                   +   +   LE     + +    +G     V L            V++ ++ +
Sbjct: 575 ANRLYNLKNSGQINKVLEGNDAVETNLAYIEGSPTNHVLLTPWGERKKTANEVIDELQAE 634

Query: 642 ITEI 645
            ++ 
Sbjct: 635 ASKN 638



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 90/269 (33%), Gaps = 8/269 (2%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                  I     + +N     K    L +  +    + +       +    +     + 
Sbjct: 224 AGTIKGEIRDFSINPVNQVTSTKDVRDLVIRVDNDNIIRIKDVADVKMGEESLEPSQLEV 283

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITE-IVPLSTIQNTEIVGPKISRELIRKGIVG 672
             +  + LQ  P  S     V   VKK +    +P               ++ I    + 
Sbjct: 284 NGHTAMSLQVLPFKSENPVTVAHHVKKAMETMQLPADLEMKMVYNQADFIQKAIDDSFMT 343

Query: 673 VIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
           ++ + + +  I +        A+  + T+ + +       A+ G   N+  + A++  IG
Sbjct: 344 LLEAIVLVSAIVVLFLGSLRVAIIPLITIPVCVIGVFAVMAMLGFSINVLTILAIILAIG 403

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D +VV +      +     +S       S  E +   +  ++   +  LP+ +  G
Sbjct: 404 LVVDDAIVVVENC---YRHIENGLSPIQAAMTSAKEIVFPVIAMTLTLAVVYLPIGLMSG 460

Query: 792 ---SVIGSFAIPMAFGIVVAASSSIFIAA 817
               +   FA  +A  ++++   ++ ++ 
Sbjct: 461 LTADLFRQFAFTLAAAVILSGFVALTLSP 489



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 97/276 (35%), Gaps = 10/276 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       +T+ +   ++ K      VL    V     +    S  +     
Sbjct: 730  TFLGSVKAADLQTDDGYTYPIEVQVNRKDLGDFKVLDKLYVVSEAGQKLPLSQFVSITPV 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                  K +  +   +   ++        ++  + + +P   +         + +EL   
Sbjct: 790  TAESNIKTYNGKDAAEITANLVSGYSASDIEAYLDQQLPQLLMAGQSYKYDGVIKELNES 849

Query: 669  GIVG---VIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                     ++ I + + + ++F+ +   L  + T+ L +   +   ++FG   NL +  
Sbjct: 850  SAGMQVLFGLALIFIFLILAVQFESFVDPLIILLTVPLCLVGAILTLSVFGQSLNLYSKI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +    N+K     +   +    S    L   + TS+   I  L
Sbjct: 910  GLLTLVGLVTKHGILMVE--FANIKRKEK-VELMEAAMMSARARLRPILMTSLTMIIGSL 966

Query: 785  PMAVW-GGSVI--GSFAIPMAFGIVVAASSSIFIAA 817
            P+A+  G   +   +  + +  G+ +    S+FI  
Sbjct: 967  PLALADGPGSLGQINIGLVLVGGLTIGTLFSLFIVP 1002


>gi|186472340|ref|YP_001859682.1| acriflavin resistance protein [Burkholderia phymatum STM815]
 gi|184194672|gb|ACC72636.1| acriflavin resistance protein [Burkholderia phymatum STM815]
          Length = 1036

 Score =  124 bits (309), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 60/591 (10%), Positives = 160/591 (27%), Gaps = 34/591 (5%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
                +   PS      +             L     D V   +    +     +     
Sbjct: 30  FRLLPVAALPSVDFPVVM---------VSATLSGANSDTVAKTVTAPLERAFGSIAGLSQ 80

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                    ++I L F  +R  +  A  V   +    S L     +           + +
Sbjct: 81  MTSQSSSGSSQIVLQFDLNRDIDGAARDVQAAINAARSNLPTTLTQTPTYRKMNPAAAPM 140

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
           +    +        +           ++   E           L  +  E +P +L +  
Sbjct: 141 MI-VGLTSDTVGVGQMYDYASSVLQQKLLQVEGVGDVTVGGGALPAVRVELNPDQLSRYG 199

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
                +       +         +       G    + +  +                  
Sbjct: 200 IALDSVRTALANASVDLPKGAVSMNGQHYVTGANDQLTEPAD------------------ 241

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +                 + +    + +  +         I S +   +   T++
Sbjct: 242 --YKPLVIRTHDGTVVHVTDVAQVVRSTEDLRNYGLANGKPAVLLIVSKQPNANVIKTVD 299

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   L A         V          S    + +      LV  V +      + 
Sbjct: 300 AIRDTLPQLAASLPSTVKLNVVLDGTQTIRSSVFDVEISLLAAVLLVTAVSYAFFRDWRS 359

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   ++ L +  T   +  LG +L   S+  + +  G  VD  I+V E I     + +
Sbjct: 360 TLIPAITVPLALAGTFTAMYFLGYSLNNLSLMALTISTGFVVDDAIVVVENIMRHVDQGK 419

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTA 503
           +   +   G      T+   +++ ++  + L       G   R F++++ ++I+ISM  +
Sbjct: 420 TPLAAALDGTREVGFTVLTISVSLVVVFLPLIMMSGIVGRLFREFSVSLAIAIMISMVIS 479

Query: 504 ISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
           +++   +   ++R    K  +     R            +R     + +++     ++ +
Sbjct: 480 LTLAPTLGRLLLRGPPHKQSEGASGPRVERAYARSLRWALRHPKMMLAVTVFLLFANVGV 539

Query: 564 LFTHGL-NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
           +       + I+  G +   + A++ +    ++   + +    +   +   
Sbjct: 540 VAVMPKGFFPIEDTGRLMGNIQASQSISFQAMKQKFDEINRRILQNADVQS 590



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 87/250 (34%), Gaps = 7/250 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +       V ++ V   + S +               L+  +    + +     +    
Sbjct: 246 VIRTHDGTVVHVTDVAQVVRSTEDLRNYGLANGKPAVLLIVSKQPNANVIKTVDAIRDTL 305

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            ++   +P +   N  + G +  R  +    + ++ + + +    +  F+ W   L    
Sbjct: 306 PQLAASLPSTVKLNVVLDGTQTIRSSVFDVEISLLAAVLLVTAVSYAFFRDWRSTLIPAI 365

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           T+ L +  T       G   N  ++ A+    G+ V+D +VV + +   M+      +  
Sbjct: 366 TVPLALAGTFTAMYFLGYSLNNLSLMALTISTGFVVDDAIVVVENI---MRHVDQGKTPL 422

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFI 815
                   E     +  S++  +  LP+ +  G V      F++ +A  I+++   S+ +
Sbjct: 423 AAALDGTREVGFTVLTISVSLVVVFLPLIMMSGIVGRLFREFSVSLAIAIMISMVISLTL 482

Query: 816 AAPILLFIYD 825
           A  +   +  
Sbjct: 483 APTLGRLLLR 492



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 91/240 (37%), Gaps = 6/240 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L +  +           +   V L Y   + V  +   E +K  +  +   +TI    
Sbjct: 792  SALATRTLSHAPVTIAHDNQFAAVTLSYNLREGVTMSDANESIKSAVASLNLPNTILPGF 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                 + ++     ++ +I + +A+ I + I ++     L  ++TL       L    + 
Sbjct: 852  AGQGAMMQQSGGSELLLIIGALMAVYIALGILYENLIHPLTILSTLPSAGLGALVALYVC 911

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G E  + A+  ++ LIG    + +++ D             S  + I ++        + 
Sbjct: 912  GYELTIIALIGIVLLIGIVKKNAIMMVD--FAVTYEREQGSSAEESIYQACLTRFRPIMM 969

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++AA +  +P+ V  G          + +  G++V+   ++F    I L++  +  + A
Sbjct: 970  TTLAALLGAVPLIVSSGYGHEFRHPLGVAIFGGLMVSQLLTLFTTPVIYLWLDRFNGRRA 1029


>gi|311742261|ref|ZP_07716070.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Aeromicrobium marinum DSM 15272]
 gi|311313889|gb|EFQ83797.1| RND superfamily resistance-nodulation-cell division:proton (H+)
           antiporter [Aeromicrobium marinum DSM 15272]
          Length = 959

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 64/509 (12%), Positives = 167/509 (32%), Gaps = 53/509 (10%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGI 424
           I   +  +VL+++    +  ++   +  L V+++++L+      LT+ S A    +++G+
Sbjct: 182 IGVIVAFVVLYLMFRSLRAAVMPIVTAVLGVLVSMSLIIAATGFLTISSTAPLLALMIGL 241

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            + +D  + +  R RE+  +      +     + A S +  + +T +IA + L       
Sbjct: 242 AVGIDYALFIVARHREQLAEGMEPEEAAARSVATAGSAVVFAGVTVVIALLGLAIARIPF 301

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           +        L+++I++  A++++ A++          +           +   I    + 
Sbjct: 302 LTVMGAVAALAVVIAVAVALTVLPALLGRAGASLTPSAEHPTGGFSRRWVLAMIRRPMLA 361

Query: 545 ARFWGVGISILFSI------------------CSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                +G++I                                  +G  F   + + +   
Sbjct: 362 IVVVVIGLAIATVPAKDLRLALPDNGTAPAGSSQRVAFDIVAEEFGPGFNAPLLVTLDII 421

Query: 587 RPVD-------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              D       ++     ++ +    ++  N   +   +  +            ++E ++
Sbjct: 422 STTDPVGVVSAVADDLRAMDGVAAIGLATPNPTADTGIVQVIPTTAATDERTNDLVERIR 481

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAM----LIYIWIRFKWYFAL 694
            +                      ++  +    ++    I +    L+ + +   +   L
Sbjct: 482 DRADGWKDEHGTDVAVTGLTAGGIDVSERLFSALLPFGLIVVGLSVLLLMIVFRSFVVPL 541

Query: 695 GAITTLILDITKTLG----------FFALFGIE-----FNLTAVAAVLTLIGYSVNDKVV 739
            A    +L    + G             L  +E      +   +  +  L G S++ +V 
Sbjct: 542 KATLGFVLSTGASFGAVVAVFQWGWLMDLLHVEQTGPLISFLPIILMAVLFGLSMDYEVF 601

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-IGSFA 798
           +  RM++    Y  +   R  +         R V  +    ++V    V  G   I   A
Sbjct: 602 LMARMKEE---YVRTGDPRRAVVDGFV-GSSRVVTAAALIMLAVFAAFVPEGDPNIQPVA 657

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +A G+ V A     + AP +L ++  R
Sbjct: 658 FALAIGVFVDAFLIRMLFAPAVLELFGRR 686


>gi|182416237|ref|YP_001821303.1| CzcA family heavy metal efflux protein [Opitutus terrae PB90-1]
 gi|177843451|gb|ACB77703.1| heavy metal efflux pump, CzcA family [Opitutus terrae PB90-1]
          Length = 1108

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 69/561 (12%), Positives = 160/561 (28%), Gaps = 40/561 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV+  +    +G + +L N      LD  P       I          +       
Sbjct: 11  KNKFLVLAATAALILGGIYSLRNI----PLDAIPDLSDTQVI---------IYTEWPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          + K  +         + + + F D         +V  +L G+
Sbjct: 58  PQLVQDQVTYPLTTKMLSVPKSKVVRGYSFYGFSFVYVIFEDGTDPYWARSRVLEYLSGL 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            + L  +    L    T    + + S   ++       E           Q+   E   +
Sbjct: 118 QASLPKNVTPTLGPDATGVGWAFMYS---LNSTKHDLAELRSMQDWFLRYQLASVEGVAE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + Q     DP RL     + + ++      N    G    +         +  
Sbjct: 175 IASVGGFVKQYHITVDPHRLHAYNLSISDVAMAVEKSNGEVGGRSVEMAEKEFILRVKGY 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V D   +                    V +     G         +    P        +
Sbjct: 235 VTDVEMLK------------------KVAVGRGPGGTPILLGEVANVQLGPDMRRGIAEL 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +  +     I+                    +          +    
Sbjct: 277 NGEGETVGGVVVVRYGVDTRQVIQAVKARLDQAMKSLPEGVTYSIAYDRTALIDRAVKTL 336

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K      + +V +V  + +++ +   VA   + + V+ +++++   G +  + S+ GI +
Sbjct: 337 KEKLIEESIVVALVCLIFLMHLRSAFVAIVILPIAVLASISIMYGQGLSANIMSLGGIAI 396

Query: 423 GIGLAVDSNILVNERIREENRKN---QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +G  VD+ I++ E   +    +   +  +  +         T+F S +   ++ + +F 
Sbjct: 397 AVGAMVDAAIIMIENAHKHIEHDGGKKPHWDIIRDAAVEVGPTLFYSLLVITVSFLPVFT 456

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   +  A T   S+  +   +I++   +M F IR K               +  
Sbjct: 457 LQAQEGRMFKPLAFTKTYSMGAAALLSITLAPVLMGFFIRGKIPAEEKNPVNRFLIWLYH 516

Query: 537 CIAIQFMRARFWGVGISILFS 557
            +    ++ R+W + I+ +  
Sbjct: 517 PVLDLMIKFRWWVITIAAVVV 537



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/203 (16%), Positives = 79/203 (38%), Gaps = 8/203 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIR 687
            A    L+   K + E V  S   +   +  +  + L  K I   ++++ + ++  + +R
Sbjct: 300 QAVKARLDQAMKSLPEGVTYSIAYDRTALIDRAVKTLKEKLIEESIVVALVCLIFLMHLR 359

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                A  AI  L + +  ++      G+  N+ ++  +   +G  V+  +++ +   K+
Sbjct: 360 ----SAFVAIVILPIAVLASISIMYGQGLSANIMSLGGIAIAVGAMVDAAIIMIENAHKH 415

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFG 804
           ++         D+I  +  E      Y+ +   +S LP+         +    A    + 
Sbjct: 416 IEHDGGKKPHWDIIRDAAVEVGPTLFYSLLVITVSFLPVFTLQAQEGRMFKPLAFTKTYS 475

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
           +  AA  SI +A  ++ F    +
Sbjct: 476 MGAAALLSITLAPVLMGFFIRGK 498



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 66/228 (28%), Gaps = 19/228 (8%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N  + +  Q  D     R  +       +   +       I        + R     +I+
Sbjct: 867  NAWIYVDVQGVDLGNYVRGAQQTVNDAIQRGEIKIPTGYSIFWSGQYEYMQRAQQRLMIV 926

Query: 676  SAIAMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
              + + + I+I +     W      +  +   +        L        +VA  + +I 
Sbjct: 927  VPLTLFVIIFIIYLNTQSWIKTGIVLLAVPFSLVGAFWALYLLDY---NMSVAVWVGIIA 983

Query: 732  Y-SVNDK-----VVVYDRMRKNMKLYTT---SISFRDLIDKSINETLGRSVYTSMAAFIS 782
               ++ +     ++  D    + K       +   RD I     + +     T+      
Sbjct: 984  LAGLDAETGVVMLLYLDLAYDDWKKKGKMLTTFDLRDAIYHGAVKRVRPKAMTAAVIIAG 1043

Query: 783  VLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +LP+      G   +   A+PM  G++ +    + +   I        
Sbjct: 1044 LLPILWSHGTGADTMKRIAVPMVGGVITSTLMELLVYPAIFFLWRRRS 1091


>gi|160877542|ref|YP_001556858.1| CzcA family heavy metal efflux protein [Shewanella baltica OS195]
 gi|160863064|gb|ABX51598.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS195]
 gi|315269740|gb|ADT96593.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS678]
          Length = 1017

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/591 (11%), Positives = 168/591 (28%), Gaps = 42/591 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD--EDDFVN 67
           L+ +I  + +++A         LD FP   P               ++L+      + + 
Sbjct: 14  LFVLIVALIIMLAGARAWFSIPLDAFPDISPTQ-----------VKIILKAPGMTPEEIE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             + +  +     +  + I   + +   + ITL F +         +V+  +  V     
Sbjct: 63  AQITVPIETELLGIPHQSILRSTTKYAISDITLDFDEGTDIYWARQQVSERIAAVWDSFP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 +   +T      + S   ++      +E+   +  +    +             
Sbjct: 123 EGVTGGVAPMSTPLSEIFMFS---LENPNLSLMERRQLLEWEIRPLLRTVAGVADVNILG 179

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
                      P+ +     + A +    V  N+++      +                 
Sbjct: 180 GYAKSFSVTPKPAAMAAAGVSFAALQQAIVENNHNEGAGKLTI----------------- 222

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
              G       A         +  +      AR +      +I                 
Sbjct: 223 ---GTDTIIVRAEGRIDDIDELKQLVIKADDARVYRLQDLADIQIGHLARYGAVTKDGNE 279

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
             +A+       +    ++        +                      +         
Sbjct: 280 TAEALIIALKDANTAQVVKNIKEKLDQISLTLPEGSQINTFYDRANLINTAIDTISNALF 339

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               LV+I+L + +   +  LV   S+ L  ++T  ++     +  L S+ G+V+ IG+ 
Sbjct: 340 EAVVLVIILLALFLGNVRAALVVSLSLPLAALMTFLMMDYFNLSANLMSLGGLVIAIGML 399

Query: 428 VDSNILVNERIRE--ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           VDS+++V E +      ++       +          +    +  +I    L       G
Sbjct: 400 VDSSVVVVENMVNLIATKQRLPRLHLIFRATKDVAIPVVSGTVIVMIVFSPLLTLSGLEG 459

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A+T+  ++L ++  +++++  +  +++  K  K        +   +        
Sbjct: 460 KLFTPVAVTIVFAMLSALVLSLTVIPVIASYLVNEKAAKEPKAIEKLKQLYLGSLKGTFS 519

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            + RF  +  S+L     +  L           +G I L +  +  + L  
Sbjct: 520 HQKRFIVIAFSLLIVSLGLFGL-VGKTFMPTLDEGDIILQLEKSPSISLEA 569



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 82/231 (35%), Gaps = 3/231 (1%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L  +            +      E    + +  +  ++    + ++    +I+  +P  +
Sbjct: 256 LQDLADIQIGHLARYGAVTKDGNETAEALIIALKDANTAQVVKNIKEKLDQISLTLPEGS 315

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLG 709
             NT      +    I      +  + + ++I + +       AL    +L L    T  
Sbjct: 316 QINTFYDRANLINTAIDTISNALFEAVVLVIILLALFLGNVRAALVVSLSLPLAALMTFL 375

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
               F +  NL ++  ++  IG  V+  VVV + M  N+      +    LI ++  +  
Sbjct: 376 MMDYFNLSANLMSLGGLVIAIGMLVDSSVVVVENMV-NLIATKQRLPRLHLIFRATKDVA 434

Query: 770 GRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
              V  ++   I   P+    G     F  P+A  IV A  S++ ++  ++
Sbjct: 435 IPVVSGTVIVMIVFSPLLTLSGLEGKLF-TPVAVTIVFAMLSALVLSLTVI 484



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 86/239 (35%), Gaps = 12/239 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ +L            + N    +          + V E+  K   EI   S    + 
Sbjct: 785  SDVATLSYKQGPILIEREQGNRFSVITTNVQGRDIVSFVEELNAKIAQEIKLPSGYSVSF 844

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +  +      ++ + I+   + + ++  F      G I   +       G  +L+ 
Sbjct: 845  GGEFENQQRATSNLLLVIPIAIALITLILFTTFGSLAKAGLILANV-PFAMMGGIVSLYL 903

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   ++ A    + L+G +V + VV+     +  K   +  + R+ +++     L   +
Sbjct: 904  SGEYLSVPASVGFIALLGVAVLNGVVMVS-YYEQTKHMFS--NLRERVEQGAARRLRPIL 960

Query: 774  YTSMAA-FISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             T        ++P+      G  +    AI +  G++ +  +++++  PIL F  + R 
Sbjct: 961  MT-ATTAMFGLMPLVFASGPGAEIQKPLAIVVIGGLLTSTITTLYLL-PILYFWLEKRK 1017


>gi|114566645|ref|YP_753799.1| hypothetical protein Swol_1118 [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337580|gb|ABI68428.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 1009

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 77/598 (12%), Positives = 167/598 (27%), Gaps = 47/598 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           ++ ++ I   +   +GL                P       +            +     
Sbjct: 12  SSRFITIFIILSLVLGLYS-----YYLLPKQESPEVSAPVAM---------ISNIYPGAS 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +     L          R   + + L   +    E   +++   L   
Sbjct: 58  PQEVERMVTRVIESNIRKLPGYDFSESYSRNSISVVLLQLQNDAPVEESWNELRRILSDT 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  +     L T   +   I++S         +  E+   +  +   ++   E   +
Sbjct: 118 QRELPPECLPIQLNTDLAETAGIIVSL----SGQHYNPEELAVVAEKFKKRLEQVEGIAR 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    ++  E D +RL     +  ++                          N  +
Sbjct: 174 FEIFGEEKKRIEVEIDHTRLAASGLSLEEIFNILQAQ-------------------NVVI 214

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +   GI  N     +          I                NI   L        
Sbjct: 215 PPGAIVEEGIKTNVRIPGWYNSLDDIENTIIGVSPDGISQRLKDIANIRWELEPDRPLAR 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +A+ +     +        L++ +    L             +   +
Sbjct: 275 YNGQSALLLTGYFEAEENILLVGKKLRDELDKLKSEAPHDLLVDQVLFQPDEVNKNLYRF 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   +++I++ ++ +  K  LVA  +I L+++L+   + LLG  +   SIA +++
Sbjct: 335 LRNL-LEGIILVIIVVLLGMGWKNALVASTAIPLSIMLSFMAMYLLGIKVQEISIAALII 393

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
            +G+ VD  I++ + I+    K      +   G  +A   I  + +  +IA   +F    
Sbjct: 394 VLGILVDDAIVMVDAIQVGLDKGLKRMEACLQGLKQAAIPILTATLVIIIAFSPIFVLPG 453

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G  ++     + +S+L S   A+ I  AM        + +         +        
Sbjct: 454 APGEFLQSLPQIVLISLLASYVVAMFITPAMAYRFFTPSQHRK------DDWLRRFFAYL 507

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +    AR     IS L          T              L +  N P   + VR+ 
Sbjct: 508 LHESMARKRTAIISSLLIFSLAVYALTFMGLQFFPSADKDLLYIDINAPAGSTRVRTE 565



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 59/145 (40%), Gaps = 6/145 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W  AL A T + L I  +     L GI+    ++AA++ ++G  V+D +V+ D ++  + 
Sbjct: 355 WKNALVASTAIPLSIMLSFMAMYLLGIKVQEISIAALIIVLGILVDDAIVMVDAIQVGLD 414

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIV 806
                +   +   + + +     +  ++   I+  P+ V  G+    + S    +   ++
Sbjct: 415 KGLKRM---EACLQGLKQAAIPILTATLVIIIAFSPIFVLPGAPGEFLQSLPQIVLISLL 471

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
            +   ++FI   +    +       
Sbjct: 472 ASYVVAMFITPAMAYRFFTPSQHRK 496



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 82/218 (37%), Gaps = 7/218 (3%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQ-TRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
            S   +DG+ +  VR   +PG S  +  + L+     +                      L
Sbjct: 789  SINKYDGQNSIKVRSDIRPGYSAVEIEKELKDKLSSVELPGVSLLYDGEYKQIKDNFGIL 848

Query: 666  IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             R  ++ +    +   I +     +   L    T+ L +  ++    LF    +  A   
Sbjct: 849  TRAALLAL---FLIYFILVLQFHSFIQPLVIFLTIPLALIGSILGLLLFRQPLSFMAFIG 905

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            +++L G  + + +++   +          ++     + ++       + +++ A I ++P
Sbjct: 906  MVSLTGLVIRNAILLIAFIND---ARERGLAVEKACEDAVERRFRPIILSAVTATIGLVP 962

Query: 786  MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            +A+ G S+    AI + FG++VA   ++ I   +   +
Sbjct: 963  LALSGSSLFVPLAIAIIFGLLVATLLTMVIIPVVYSLL 1000


>gi|114331742|ref|YP_747964.1| heavy metal efflux pump, CzcA family protein [Nitrosomonas eutropha
           C91]
 gi|114308756|gb|ABI59999.1| heavy metal efflux pump, CzcA family protein [Nitrosomonas eutropha
           C91]
          Length = 1031

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 68/643 (10%), Positives = 176/643 (27%), Gaps = 50/643 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF---- 65
           L  ++  + L+    +   +  +D FP                 +++ +++  +      
Sbjct: 14  LIVVVVALILMGFGLHAAQRLSVDAFPDV---------------TNVQVQIATEAVGRSP 58

Query: 66  --VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   + +  +   + +          +   + ITL F D+         V   L  V 
Sbjct: 59  EEIERLVTIPLEIAMTGMPGLEEMRSLNKSGLSIITLVFTDATDVYFARQLVMERLLEVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-----HAIEQSMEIIRQRIDQIGISE 178
           SK+       L   +T        + ++ D            ++ +         +    
Sbjct: 119 SKMPAGITPRLGPVSTGLGEVYQYTIDHPDDGERALSVEELTKRRIVQDWIVRPMLRSIP 178

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +       + Q     +P++LR    T  ++       N +  G +      +    
Sbjct: 179 GVAEINSQGGYVKQYHVLTNPNKLRHYDLTLEQVEKAIAENNANASGGILPTGSEQYLVK 238

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              L+    +I  I L+              V +  +            ++         
Sbjct: 239 GVGLIRTLQDIGNIVLSEERGVPVFVRDVAEVKLGTEVRAGAIIKGGYTESASG------ 292

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                        +               A +     +         +           +
Sbjct: 293 -----------IVLMIRGGNAKEIVGRVKAKVAEINEQNLLPDGLQIVPYYDRTDLVDAA 341

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                        LV+IVLF+ +   +  L+   ++ +  +LT  +++  G +  L S+ 
Sbjct: 342 LWTVSKVLMEGIFLVIIVLFIFLGDVRSSLIVVATLVVTPLLTFMVMNHQGISANLMSLG 401

Query: 419 GIVLGIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           G+ + IGL VDS ++V E +           +S   ++    +   + +       ++  
Sbjct: 402 GLAIAIGLMVDSTVVVVENVFHRLGHSDGARESRTHAIGEAVAEVGTPVIFGICIIILVF 461

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + L       G      A T+ +++ IS+  ++++   +  ++++    +          
Sbjct: 462 LPLMTLQGMEGKLFSPLAFTIAIALAISLIVSLTLSPVLCAYVLKGGTAEHDTWIIAGLK 521

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
                 +     R R   +    L  +  +   F          +G +   +     + L
Sbjct: 522 RAYRSLLNTALKRGRLTVITALGLLLLSFMLFPFLGKSFIPTLQEGALTPQINRVASISL 581

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           S                       + L R +     +      
Sbjct: 582 SEAIEMEMEAMKAISQVPGVKSVVSKLGRGESPADPAGQNESD 624



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 78/239 (32%), Gaps = 5/239 (2%)

Query: 585 ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
             R V    + + + +  I    +         ++R              +  + ++   
Sbjct: 263 FVRDVAEVKLGTEVRAGAIIKGGYTESASGIVLMIRGGNAKEIVGRVKAKVAEINEQNLL 322

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
              L  +   +      +       ++   I  + ++++I        +L  + TL++  
Sbjct: 323 PDGLQIVPYYDRTDLVDAALWTVSKVLMEGIFLVIIVLFI-FLGDVRSSLIVVATLVVTP 381

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDK 763
             T       GI  NL ++  +   IG  V+  VVV + +   +        S    I +
Sbjct: 382 LLTFMVMNHQGISANLMSLGGLAIAIGLMVDSTVVVVENVFHRLGHSDGARESRTHAIGE 441

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPI 819
           ++ E     ++      +  LP+    G     F   A  +A  + ++   S+ ++  +
Sbjct: 442 AVAEVGTPVIFGICIIILVFLPLMTLQGMEGKLFSPLAFTIAIALAISLIVSLTLSPVL 500



 Score = 58.2 bits (138), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 83/231 (35%), Gaps = 11/231 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            + A   V + +      S+  G       + ++  +V    +  D       ++    K 
Sbjct: 784  LRAPDGVTVPLYTVANISVVDGPAQVSRENAKRRVVVGSNVEGRDLGGFVAEVQERIAKE 843

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             ++      +                 IV V I+AI  L+++         L A+  L+L
Sbjct: 844  VKLPDGYFFEWGGQFENMERAMNTLSIIVPVTIAAIFFLLFMLFN---SIKLAALIILVL 900

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                  G F LF  G   ++ A    + L G +V + VV+   +R   KL    +S +D 
Sbjct: 901  PFASIGGVFGLFVTGEYLSVPASVGFIALWGIAVLNGVVLISYIR---KLRDEGVSVKDA 957

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
            + +   +     + T+  A + ++P       G  V    AI +  G++ +
Sbjct: 958  VIRGCEQRFRPVLMTATVAMLGLVPFLFATGPGSEVQRPLAIVVIGGLITS 1008


>gi|116623650|ref|YP_825806.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116226812|gb|ABJ85521.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1114

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 57/563 (10%), Positives = 156/563 (27%), Gaps = 44/563 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL-- 58
           +R     V++  +I  +G+   +        +D FP                   +V   
Sbjct: 8   LRRPYTFVVVSVLIAILGVTAII-----SMPVDIFPYIDIPV-----------VSVVWNY 51

Query: 59  -EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             +  ++     +  +   + + +              +   + F  +   E    ++T 
Sbjct: 52  SGLSPEEMEKRMVTFFERSMTTTVNDIEHIESQSYTGVSVTRVYFQPNAKVELALAQITA 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q +   +        ++      + I+      + +     E           Q+   
Sbjct: 112 ISQTLLRPMPPGTLPPSIIKYDASSVPIIQLGLQSETMSEQ--ELFDMGQNFIRTQLATI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L       Q+  + +P +L     + + +S      N         +       
Sbjct: 170 QGAAVPLPYGGKFRQVMVDLNPEQLMAKGLSASDISVALGNQNLIFPAGNAKIGDKDFQI 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                     ++                      +    +     +      +    +V 
Sbjct: 230 RTNSSPRAIDDL--------------------NMMPLRVVNGATIYLKDVAQVRDGYSVQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                               + S    ++        + AG  P                
Sbjct: 270 TSLVRTNGTRGALLTVLRSGKASTLAVVDNVKAALPKILAGLPPALKVRQLFDQSIFVRA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +       I A L  +++ + +   +  ++   SI L+++ +L +LSL+G T+ + ++
Sbjct: 330 AINGVVREGVIAACLTGMMILLFLGSWRSTIIVCISIPLSILTSLMILSLMGQTINVMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E         + +  ++  G  +  +  F S +   I  V +
Sbjct: 390 GGLALAVGILVDDATVEIENTHRNMAMRKPLVRAVLDGAQQIAAPAFVSTLAICIVFVPV 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
               G         A+ +  +++ S F + +++  M+ +++R +               +
Sbjct: 450 LLLTGAAKYLFTPLAMAVVFAMMASYFLSRTLIPTMVHYMLRSEVKLYARGEHAEGGTGL 509

Query: 535 PDCIAIQFMRARFWGVGISILFS 557
              +   F R             
Sbjct: 510 IWSVHHIFNRRFELLRASYTSML 532



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/195 (14%), Positives = 78/195 (40%), Gaps = 7/195 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 L  +   +   + +  + +  I        ++R+G++   ++ + +L+++    
Sbjct: 298 DNVKAALPKILAGLPPALKVRQLFDQSIFVRAAINGVVREGVIAACLTGMMILLFLG--- 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   +    ++ L I  +L   +L G   N+  +  +   +G  V+D  V  +   +NM
Sbjct: 355 SWRSTIIVCISIPLSILTSLMILSLMGQTINVMTLGGLALAVGILVDDATVEIENTHRNM 414

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
            +          +     +    +  +++A  I  +P+ +  G+    F  P+A  +V A
Sbjct: 415 AM---RKPLVRAVLDGAQQIAAPAFVSTLAICIVFVPVLLLTGAAKYLF-TPLAMAVVFA 470

Query: 809 ASSSIFIAAPILLFI 823
             +S F++  ++  +
Sbjct: 471 MMASYFLSRTLIPTM 485



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 63/159 (39%), Gaps = 7/159 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            +G+I + + + + + + F  W      +  L   +   +    +    F++ ++   +  
Sbjct: 930  LGMIFAVVLVYLLMAVNFQSWMDPFIILMALPGALAGIVWMLFITQTTFSVPSLMGSIMC 989

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            IG +  + +++   +  N       +  R     + +  +   + T+ A  I +LPMA+ 
Sbjct: 990  IGVATANSILLV--VFAN-DQREEGLDARSAALSAGHTRIRPVIMTASAMIIGMLPMALG 1046

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               GG         +  G+++A  +++F+   +   +  
Sbjct: 1047 FGEGGEQNAPLGRAVIGGLLMATMTTLFVVPLVYSLLRK 1085


>gi|307130119|ref|YP_003882135.1| Cobalt-zinc-cadmium resistance protein czcA; Cation efflux system
           protein cusA [Dickeya dadantii 3937]
 gi|306527648|gb|ADM97578.1| Cobalt-zinc-cadmium resistance protein czcA; Cation efflux system
           protein cusA [Dickeya dadantii 3937]
          Length = 1045

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/577 (11%), Positives = 159/577 (27%), Gaps = 49/577 (8%)

Query: 3   NNPWLVILYSMICC-IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            N +LV++ +++    G++      L ++ LD  P       I           +     
Sbjct: 11  KNRFLVLIATLLMAGWGVIS-----LQKTPLDALPDLSDVQVI---------IRVSYPGK 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +                + + F D         +V  +L  
Sbjct: 57  APQVVENQVTYPLTTTMLSVPGARTVRGFSMFGDAYVYVLFEDGTDPYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  + K +L    T                  +  +           ++    +  
Sbjct: 117 VQSTLPTEAKASLGPDATGVGWIYEY-ALVDRSGRHNLADLRAIQDWLLKYELKTVPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     +P RLR L  T  ++       N    G +  +           
Sbjct: 176 EVASIGGMVRQYQVVLNPERLRALNVTHQQVIDALRAANQESGGSVIELGEAEYMVRTSG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                    +        G     +        P        
Sbjct: 236 YLLKAED-------------------FLNVAVGRRDGIPVLLQDVATLRQGPEMRRGIAE 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +   T+         +R         +           + + 
Sbjct: 277 LNGEGEVAGGVIVMRSGKNALETLRAVHARLQQIRQSLPAGVEIVTTYDRAPLIERAITT 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  S+ L ++    ++   G    + S+ GI 
Sbjct: 337 LSHKLLEEFVVVALVCSLFLFHFRSSLVAIISLPLGILGAFIIMRYQGINANIMSLGGIA 396

Query: 422 LGIGLAVDSNILVNERIR-----------EENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + IG  VD+ I++ E +            +    N + +       +     +F S +  
Sbjct: 397 IAIGAMVDAAIVMIENMHKVIEQWRHQHPDREPDNATWWQLATQAATEVGPALFCSLLII 456

Query: 471 LIATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++ +S    I++V  +M + +R +         
Sbjct: 457 TLSFIPVFSLEAQEGRMFSPLAFTKTYAMAVSAGLGITLVPVLMGYFVRGRIPDEQANPL 516

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                 +   +  Q +R     + +S+   + ++  L
Sbjct: 517 NRWLIALYQPVLRQVLRFPKTTLAVSLALLVLTLFPL 553



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/248 (13%), Positives = 81/248 (32%), Gaps = 14/248 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S+L  +++ +               +         ++ V EM ++   ++     I  + 
Sbjct: 798  SDLADVRVSEGPPMLKSENGRLSDWIYVDLRGRDLKSAVEEMQRQVAQQVTLPQGISVSW 857

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +          + V  + + + I +++ F +   AL  + TL   +   +    L 
Sbjct: 858  SGQFEYLERATETMKLVVPFTLLIIFILLYVTFGQIKDALLIMGTLPFALIGGVWLLYLL 917

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS--------FRDLIDKSIN 766
            G   ++      + L G +    V++   +  N  +                  I +   
Sbjct: 918  GYNLSVAGAVGFIALAGVAAEFGVIML--LYLNHAVEKHRQPGQPLTDEQLTAAIREGAV 975

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +   + T       +LP+   GG    ++   A PM  G+V A   S+ +   + L +
Sbjct: 976  LRVRPKMMTVATIMAGLLPIMWGGGTGSEIMQRIAAPMVGGMVSAPLLSMLVIPALFLLL 1035

Query: 824  YDWRAKNA 831
            +  + +  
Sbjct: 1036 HRNKVEKQ 1043



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/169 (17%), Positives = 63/169 (37%), Gaps = 15/169 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+++ +  L      F +  +L AI +L L I          GI  N+ ++  +   IG 
Sbjct: 346 VVVALVCSL----FLFHFRSSLVAIISLPLGILGAFIIMRYQGINANIMSLGGIAIAIGA 401

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRD--------LIDKSINETLGRSVYTSMAAFISVL 784
            V+  +V+ + M K ++ +      R+        L  ++  E       + +   +S +
Sbjct: 402 MVDAAIVMIENMHKVIEQWRHQHPDREPDNATWWQLATQAATEVGPALFCSLLIITLSFI 461

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           P+          F   A    + + V+A   I +   ++ +    R  +
Sbjct: 462 PVFSLEAQEGRMFSPLAFTKTYAMAVSAGLGITLVPVLMGYFVRGRIPD 510


>gi|161506504|ref|YP_001573625.1| CzcA family heavy metal efflux protein [Burkholderia multivorans
           ATCC 17616]
 gi|189348834|ref|YP_001942029.1| HME family heavy-metal exporter [Burkholderia multivorans ATCC
           17616]
 gi|160346742|gb|ABX19825.1| heavy metal efflux pump, CzcA family [Burkholderia multivorans ATCC
           17616]
 gi|189338972|dbj|BAG48039.1| HME family heavy-metal exporter [Burkholderia multivorans ATCC
           17616]
          Length = 1070

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 63/601 (10%), Positives = 149/601 (24%), Gaps = 62/601 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L         + +      +  +D  P                   + +      
Sbjct: 13  RWLVMLAIAAVAALGVFS----YQRLPIDAVPDITN-------------VQVQINTSAPG 55

Query: 65  FV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +    + + + L          R   +++T+ F D          V   +Q
Sbjct: 56  YSPLEAEQRITYPVETVMAGLPGLEQTRSISRYGLSQVTVIFKDGTDIYFARQLVNERIQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV------ISHAIEQSMEIIRQRIDQI 174
               KL       +  T+T      + +                A +           Q+
Sbjct: 116 EAKDKLPAGIAPAMGPTSTGLGEIYLWTVEADANARKPDGTRYTATDLRELQDWVVRPQL 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +       + +     +P++L     T A +       N++        R  +
Sbjct: 176 RNVRGVTEVNSIGGYVKEYRVAPNPAKLMSYGLTLADVVRALERNNDNVGAGYIEKRGEQ 235

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                        +I                     +I    +G           +    
Sbjct: 236 YLVRVPGQARTVDDI--------------------ANIVLTNVGGVPVRMKDVGVVDIGR 275

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          I        
Sbjct: 276 ELRTGAATSNGEEVVLGTVFMLMGENSRTVSKAVAAKMEDVNRTLPAGVKAIPVYDRTVL 335

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ VLF+ +   +  L+    I L++++T   +     +  L
Sbjct: 336 VEKAVATVKKNLLEGAVLVIAVLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANL 395

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIF 464
            S+  +  GI   VD  +++ E         QS           F  +      A   + 
Sbjct: 396 MSLGALDFGII--VDGAVVIVENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALI 453

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +  ++  + +F      G      AIT+ +++  +M   ++ + A +   I  +  +
Sbjct: 454 FGQLIIMVVYLPIFALTGVEGKMFHPMAITVVMALAAAMVLTVTFIPAAVALFIGERVEE 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +A    R     +G   +  +                 +G + +
Sbjct: 514 KENRLMGWARRAYEPVLAAFMTRPARVMIGAGAIVLVTLGLATRLGSEFIPSLNEGDLAV 573

Query: 582 G 582
            
Sbjct: 574 S 574



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 82/229 (35%), Gaps = 7/229 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L ++ +     Q    +    V +          + V +  ++   ++   +    + 
Sbjct: 814  AELATIDVAPGPNQISREDGKRRVVVSANVRGRDVGSFVADAREQLQQDVRVPAGYWVSW 873

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  +    +  + V ++   + + +++ F      L   T +   ++  +    L 
Sbjct: 874  GGQFEQLQSASERLKLVVPLALFMVFVLLFVMFNNVKDGLLVFTGIPFALSGGVVSLWLR 933

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  ++TA    + L G +V + +V+   +R    L    +     +       L   + 
Sbjct: 934  GIPLSITAAVGFIALSGVAVLNGLVMISFIR---NLRDEGMPLDAAVHDGALTRLRPVLM 990

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            T++ A +  LPMA     G  V    A  +  GI+ + + ++ +   + 
Sbjct: 991  TALVASLGFLPMAFATGTGAEVQRPLATVVIGGILSSTALTLLVLPVLY 1039



 Score = 40.4 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + +          AL     + L +  T        +  NL ++ A+    G 
Sbjct: 348 LEGAVLVIAVLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS-------VYTSMAAFISVLP 785
            V+  VV+ +   + +    ++       D+   E  G S       ++  +   +  LP
Sbjct: 406 IVDGAVVIVENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALIFGQLIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    AI +   +  A   ++ FI A + LFI +    K  R+
Sbjct: 466 IFALTGVEGKMFHPMAITVVMALAAAMVLTVTFIPAAVALFIGERVEEKENRL 518


>gi|304410568|ref|ZP_07392186.1| acriflavin resistance protein [Shewanella baltica OS183]
 gi|307304661|ref|ZP_07584411.1| acriflavin resistance protein [Shewanella baltica BA175]
 gi|304351052|gb|EFM15452.1| acriflavin resistance protein [Shewanella baltica OS183]
 gi|306912063|gb|EFN42487.1| acriflavin resistance protein [Shewanella baltica BA175]
          Length = 1063

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 76/674 (11%), Positives = 175/674 (25%), Gaps = 45/674 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN+    +L   +   GL            +       P   ++L         +     
Sbjct: 13  RNSVAANLLMWALLVGGLFS---------TVLINKEVFPSFELNL-----LNISVAYPGA 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   + +  +E    +           +    IT+   D    + + D+  L L  
Sbjct: 59  APQEIEEGINIKIEEAIQDINGIKKVTSVASEGVGSITVEVEDGYEVQTVLDEAKLRLDA 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S   V+ +K  +      E +++      D  +    E +    +   D +    +  
Sbjct: 119 I-STFPVNIEKPNIYQIK-PENNVIWVSVYGDMTLHDMKELA----KSVRDDLTQLPAVT 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   +     ++  E    +LR+   T  +++      +    G           DG+  
Sbjct: 173 RAKVTGVRDYEIAIEVSEDKLREYGLTFTQVALAVQNSSFDLPGGSIRA-----QDGDIL 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L       +G                    +        R        I       L+  
Sbjct: 228 LRTKGQAYTGDD--------------FANIVVTTRPDGSRVMLPQVATIKDDFEERLEYT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       +     +               RA                   G  ++
Sbjct: 274 RFNGKPAAIIEVTSVDDQNALDIAAQVKQYVEDRRATLPANAQLDTWGDMTHYLKGRLNM 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL--LGATLTLPSIAG 419
                   A LV I+L M +   K        + +  + T+ ++ L     T+ + ++  
Sbjct: 334 MMSNMFYGALLVFIILAMFL-DLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFA 392

Query: 420 IVLGIGLAVDSNILVNERIREE-NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +L +G+ VD  I++ E    E  R   SV   +      A    F    T      +L 
Sbjct: 393 FILVLGIVVDDAIVIGESAYTEVERHGHSVDNVIRGAQKVAMPATFGVLTTIAAFIPMLM 452

Query: 479 FFGGGAV--RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   +  +   + + L +  S+  +  I+ A +  +   K           +      
Sbjct: 453 VSGPMGIIWKSIGMVVILCLAFSLVESKFILPAHLAHMKFKKPGAPRGFFGRLKANFNDR 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
                    R +               +    L+  +   G ++     + P D   V+ 
Sbjct: 513 VQYFIHHSYRNFLERCIKQRYNVVAAFIGVLILSIALVASGKVRWVFFPDIPSDFIQVQL 572

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++     + + +     +  L ++  +         V        +        + T+ 
Sbjct: 573 EMDEGSSEENTLKVVQSIEEALYKMNDKMEQDNGYQVVKHSFINMSSRTSAFIFAELTKG 632

Query: 657 VGPKISRELIRKGI 670
              ++    I    
Sbjct: 633 EDREVDGVTIAAAW 646



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 89/256 (34%), Gaps = 10/256 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +       +               S    DG++   +              V E+ K  +
Sbjct: 778  IRTPTGTSVPFSTVAQIEKGESYASITRVDGKRAITITANANKNIVEPSKVVQEIQKDYL 837

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             ++        T + G  +  +    G++ G   +   +   + I  K  ++   I   +
Sbjct: 838  PQLQAKYPKIQTALDGGSLDEQNAMVGLMQGFFFALFTIYALMAIPLK-SYSQPLIIMSV 896

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            +        F     G+  ++ ++  ++ L G  VND +++ D +    +     +S R 
Sbjct: 897  IPFGIIGALFGHLIQGLAMSVLSLCGIVALAGVVVNDSLILVDFVN---RAREQGLSVRQ 953

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                S        + TS+  F+ ++P+ +       ++   A  +AFGI+ +   ++ + 
Sbjct: 954  AAVDSGCYRFRAIILTSLTTFVGLVPIILERSLQAQIVIPMATSLAFGILFSTVVTLILV 1013

Query: 817  APILLFIYDWRAKNAR 832
              + + + D    ++R
Sbjct: 1014 PLLYIILDDVSRSSSR 1029



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 89/280 (31%), Gaps = 8/280 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           SI      I L        G DF   +         V L  V +  +  +      +   
Sbjct: 218 SIRAQDGDILLRTKGQAYTGDDFANIVVTTRPDGSRVMLPQVATIKDDFEERLEYTRFNG 277

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                +        +++     ++   +     +P +   +T        +  +   +  
Sbjct: 278 KPAAIIEVTSVDDQNALDIAAQVKQYVEDRRATLPANAQLDTWGDMTHYLKGRLNMMMSN 337

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLI 730
           +   A+ + I + +      A   +  L +    T+    L  F +  N+  + A + ++
Sbjct: 338 MFYGALLVFIILAMFLDLKLAFWVMMGLPVCFLGTMLIMPLEPFSMTINMLTLFAFILVL 397

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ +      ++     S  ++I  +    +  +    +    + +PM +  
Sbjct: 398 GIVVDDAIVIGESA--YTEVERHGHSVDNVIRGAQKVAMPATFG-VLTTIAAFIPMLMVS 454

Query: 791 GSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           G +     S  + +   +  +   S FI    L  +   +
Sbjct: 455 GPMGIIWKSIGMVVILCLAFSLVESKFILPAHLAHMKFKK 494


>gi|152983581|ref|YP_001349369.1| CzcA family heavy metal efflux protein [Pseudomonas aeruginosa PA7]
 gi|150958739|gb|ABR80764.1| heavy metal efflux pump, CzcA family [Pseudomonas aeruginosa PA7]
          Length = 1050

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 66/576 (11%), Positives = 148/576 (25%), Gaps = 48/576 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +L++L    I   G+       L  + +D  P       I                  
Sbjct: 12  NRFLILLATLFIVAWGVWS-----LRSTPVDALPDISDVQVI---------IRTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGFSSFGDSFVYVLFEDGTDLYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    K  L    T                     +           ++       +
Sbjct: 118 QSRLPSTAKAALGPDATGVGWIYQY-ALLDRSGRHDLAQLRALQDWFLKYELKTVPDVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP RL  L  T  ++       N    G +  +            
Sbjct: 177 VATVGGMVKQYQVVLDPVRLASLGITQGQVIEAIGKANREAGGGVLELGEAEFMVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E   +                     + +     G+             P      G +
Sbjct: 237 LETLADFRA------------------IPLRLAANGSPVTLGDVASIQLGPEVRRGIGEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   ++  +    I         L+         +           + S  
Sbjct: 279 DGEGEAVGGVIVLRSGKNARQAIAHVKAKLETLKKSLPEGVEIVTTYDRSQLIDRAVSNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V    + + +  LVA  S+ + V++ L ++   G    + S+ GI +
Sbjct: 339 SHKLIEEFIVVALVCAAFLWHLRSSLVAIVSLPVGVLIALIVMRHQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            IG  VD+ +++ E   +                +  +  +    +     +F S +   
Sbjct: 399 AIGAMVDAAVVMIENAHKRVEAWQEKHPGMPLVGEQRWKVMTEAATEVGPALFFSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++  +   ++++V  +M + IR +          
Sbjct: 459 LSFIPVFTLQAQEGRLFGPLAFTKTYAMAGAAALSVTLVPVLMGYWIRGRLPSEQRNPLN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                +        +R     +  + L  +  +  L
Sbjct: 519 RWLIRLYQPALDAVLRRPRTTLATAALVFLSGLWPL 554



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 57/162 (35%), Gaps = 10/162 (6%)

Query: 675  ISAIAMLIYIWI-RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ I +L+Y+   RF     + A   L L     +    L G   ++      + L G +
Sbjct: 880  LAIIFVLLYLTFGRFDEALLIMATLPLALTGG--VWLLYLMGFNLSVATGVGFIALAGVA 937

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
                V++   ++    +        +    I +   + +     T       +LP+   G
Sbjct: 938  AEFGVIMLVYLKNAWSVRPDGGGPGELLAAIREGAVQRVRPKAMTVAVIVAGLLPILWSG 997

Query: 791  G---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            G    V+   A PM  G++ A   S+F+      ++   R  
Sbjct: 998  GTGSEVMSRIAAPMVGGMLTAPLLSLFVIPA-AYWLMRRRQP 1038



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/166 (13%), Positives = 60/166 (36%), Gaps = 15/166 (9%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++++ +         +    +L AI +L + +   L      GI  N+ ++  +   IG 
Sbjct: 347 IVVALVCA----AFLWHLRSSLVAIVSLPVGVLIALIVMRHQGINANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVL 784
            V+  VV+ +      +  +     +         ++ ++  E      ++ +   +S +
Sbjct: 403 MVDAAVVMIENAHKRVEAWQEKHPGMPLVGEQRWKVMTEAATEVGPALFFSLLIITLSFI 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           P+          F   A    + +  AA+ S+ +   ++ +    R
Sbjct: 463 PVFTLQAQEGRLFGPLAFTKTYAMAGAAALSVTLVPVLMGYWIRGR 508


>gi|148826459|ref|YP_001291212.1| cation/multidrug efflux pump [Haemophilus influenzae PittEE]
 gi|148716619|gb|ABQ98829.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           PittEE]
          Length = 1026

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 9   RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 50

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 51  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 111 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 168 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 228 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKEND 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 268 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 328 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 388 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGVREIAVPVISMTIALIAVYSPM 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 448 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 496



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 86/250 (34%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 764  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGTSSGDAIAWLQQQAND 823

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 824  NLPQ-GYTYDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 878

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF++ G   N+ +   ++TL+G      +++ +  ++    Y  
Sbjct: 879  VPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLNYGK 938

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVVAAS 810
            +    + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ +   
Sbjct: 939  TR--IEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLSIGTI 996

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 997  FTLFVLPVVY 1006



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 79/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 301 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +        + E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGVREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 474

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 475 VALTLSPMMSSKLLKSNAKP 494


>gi|56459174|ref|YP_154455.1| divalent cation exporter protein [Idiomarina loihiensis L2TR]
 gi|56178184|gb|AAV80906.1| Divalent cation exporter protein [Idiomarina loihiensis L2TR]
          Length = 1022

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 81/598 (13%), Positives = 180/598 (30%), Gaps = 43/598 (7%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
               L+  I  + L+ A    L Q  +D FP   P              +++L       
Sbjct: 10  LKNRLFVFITFLLLIAAGIQSLRQLPVDAFPEISPTQ-----------VNVILRAPGMAA 58

Query: 66  --VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +    +     +  + I   + +     ITL F +         +V   L  V+
Sbjct: 59  ERVENQVTHPLETELLGIPNQTILRSTTKYGITSITLDFDEGTDIYWARQQVAEKLAAVS 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    +  +   +T      + +   I+    +  ++   +       +   E     
Sbjct: 119 KDLPDGIQGGMAPMSTPLSEMFMFT---IENPGMNLEQKRHLLDWVIRPTLRTVEGVADV 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                 +         S+L     +   +       N               S      +
Sbjct: 176 TNLGGKVRTFQFTPSASKLSDAGISLQTIKDALADANQVGNLGRITQGTETFSARVTGRI 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +++ I +               V +S+         +      G  + +       
Sbjct: 236 VALDDLAAISVTNQYQQVYRLDQLGDVALSYLPRFGAITKDGEEAVEGLVVGLKGANAAA 295

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               + Q                      A ++          V     G    + +   
Sbjct: 296 VVEAVEQ--------------------KLAQIKPSLPKDTDINVFYNRKGLIDTAIAGIS 335

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   LV+ VL   +   +  ++   SI +  ++T   L LLG +  L S+ G+V+ 
Sbjct: 336 DALMQSIVLVIAVLVFFLRNVRASILVSLSIPVAALITFICLQLLGLSANLMSLGGLVIA 395

Query: 424 IGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           IG+ VDS++++ E+I  E    +    +        S A S +  + I  L+   +L   
Sbjct: 396 IGMIVDSSVVITEKIETELNSQKQLPLLHKIYRASLSVAPSVVSGTVIIILVFLPLLTLT 455

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G      A+T+ ++I  ++ T+++++ A+   ++R K  ++  +  +   +      
Sbjct: 456 GLEGKLFSPVALTIVIAITAALVTSLTLIPALGSLLMRPKARRNKSLERMQACYQRILSG 515

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
           AI+   A   G    +      +  +    +      +G I + +  +  + L     
Sbjct: 516 AIKRRSATLMGFAGVLAL--SVVSFIMVGKIFMPTMDEGDIIVQLEKSPTISLQESIE 571



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/257 (12%), Positives = 85/257 (33%), Gaps = 5/257 (1%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +     +   L  +     S      +      E    + +  +  ++ A    +E   
Sbjct: 245 SVTNQYQQVYRLDQLGDVALSYLPRFGAITKDGEEAVEGLVVGLKGANAAAVVEAVEQKL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            +I   +P  T  N       +    I      ++ S + ++  +    +    ++    
Sbjct: 305 AQIKPSLPKDTDINVFYNRKGLIDTAIAGISDALMQSIVLVIAVLVFFLRNVRASILVSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ +    T     L G+  NL ++  ++  IG  V+  VV+ +++ +        +   
Sbjct: 365 SIPVAALITFICLQLLGLSANLMSLGGLVIAIGMIVDSSVVITEKI-ETELNSQKQLPLL 423

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFI 815
             I ++        V  ++   +  LP+    G     F   A+ +   I  A  +S+ +
Sbjct: 424 HKIYRASLSVAPSVVSGTVIIILVFLPLLTLTGLEGKLFSPVALTIVIAITAALVTSLTL 483

Query: 816 AAPILLFIYDWRAKNAR 832
              +   +   +A+  +
Sbjct: 484 IPALGSLLMRPKARRNK 500


>gi|206601466|gb|EDZ37952.1| Putative heavy metal efflux protein, CzcA [Leptospirillum sp. Group
           II '5-way CG']
          Length = 1060

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 81/606 (13%), Positives = 168/606 (27%), Gaps = 42/606 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   W++ +  +I   G +      L QS LD  P       I                 
Sbjct: 11  QRRYWVLGICLLILAWGSIS-----LYQSPLDAIPDLSDTQVI---------VKASFAGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + I + F +   +     +V  +L  
Sbjct: 57  PPSVVENQVTYPLTTAFLTIPGVRHVRGYSDFGNSLIYILFKEGTDQYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L      +L    T                                 ++       
Sbjct: 117 VEGRLPQGVTASLGPDATGLGWIYEY-ALLDKTHRYDLSRLRSIQDWFLRFELQSIHGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q      ++ +   E DP +L       +K+       N    G +  +   +    ++ 
Sbjct: 176 QVASVGGMVTEFQVEVDPRKLLGYHIPLSKVEKAIRNSNGDVGGSVVDMGESQFMVRSRG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                    + +S    G              P   +    
Sbjct: 236 YIRSLEDIRN------------------IPLSLGAGGVPVRLSDVASVHFGPELRLGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    IE        L+    P    +         L S   
Sbjct: 278 LDGKGEVAGGIVISRGGTNALKIIEAVKKKLRDLKPMLPPGVEIVTTYDRSRLILKSIRT 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   +  V +V  + +   +  LVA  S+ + +     L++  G T  + S+ GI 
Sbjct: 338 LLEKLLEESIAVSLVCLLFLSRIRSSLVAILSLPVGIFAAFVLMARQGLTANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           + IG+ VD+ I++ E + +   +      S   ++         ++F S +   ++ + +
Sbjct: 398 VSIGVMVDAAIVMIENMHKHRERSGESETSWETAIQSA-QEVGPSLFFSLLVITVSFLPI 456

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G   +  A T   SI IS   +I++V  +M F+IR K     D         +
Sbjct: 457 FALQDQEGRLFKPLAFTKTYSIAISAGLSITLVPVLMGFLIRGKIKPEEDNVINRILVFL 516

Query: 535 PDCIAIQFMRARFWGVGI-SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
              +    ++ R   +       +  +I L           ++G +         V +  
Sbjct: 517 YRPVIGWVLQHRKLTIAFACACLATSAIPLSHLGTEFMPPLYEGDLLYMPTLTPGVSVGE 576

Query: 594 VRSNLE 599
               L+
Sbjct: 577 SAHLLQ 582



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 7/281 (2%)

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD 612
           S         +     +       G   + V  +    +         +   D   +   
Sbjct: 227 SQFMVRSRGYIRSLEDIRNIPLSLGAGGVPVRLSDVASVHFGPELRLGIAELDGKGEVAG 286

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G                 + ++ ++       +  ++T   + ++   I   L +     
Sbjct: 287 GIVISRGGTNALKIIEAVKKKLRDLKPMLPPGVEIVTTYDRSRLILKSIRTLLEKLLEES 346

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + +S +     +    +   +L AI +L + I       A  G+  N+ ++  +   IG 
Sbjct: 347 IAVSLVC----LLFLSRIRSSLVAILSLPVGIFAAFVLMARQGLTANIMSLGGIAVSIGV 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-- 790
            V+  +V+ + M K+ +    S +  +   +S  E      ++ +   +S LP+      
Sbjct: 403 MVDAAIVMIENMHKHRERSGESETSWETAIQSAQEVGPSLFFSLLVITVSFLPIFALQDQ 462

Query: 791 -GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            G +    A    + I ++A  SI +   ++ F+   + K 
Sbjct: 463 EGRLFKPLAFTKTYSIAISAGLSITLVPVLMGFLIRGKIKP 503


>gi|94967338|ref|YP_589386.1| acriflavin resistance protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549388|gb|ABF39312.1| acriflavin resistance protein [Candidatus Koribacter versatilis
           Ellin345]
          Length = 1056

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 71/550 (12%), Positives = 162/550 (29%), Gaps = 39/550 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++ +  ++C  G+       +       FP      R+ +G+D     + V+ V+
Sbjct: 40  RNLSTILFVTIVLCVAGIYSTFSVPISVFPETDFP------RVVIGVD-----NGVMPVE 88

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +       +    ++  + +        +  + Q +++L F  +    +    V   L  
Sbjct: 89  QMQVT---ITKPIEDAVNSVPGLQTVRSTTSRGQAEVSLFFDWNEDMFHTLQLVDAALGK 145

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  +L    +      T      +  S  +         E +          +       
Sbjct: 146 VQQELPPTARLTTNRLTFATFPILGYSLTSNTVSQERLWEIATY---DLKPPLNRLPGVS 202

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +     + +     DP++L     T   +S      N      ++             
Sbjct: 203 TVVVQGGDVPEFHIVPDPAKLISTGVTITDLSDAVKKSNVIDSPGLYEANHQLVLGLVGG 262

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V D   ++ + +   TA                             ++ +         
Sbjct: 263 QVHDAAGLAAVAVKITTA-------------------GVPVHIGDVASVQQAAQPKYTIV 303

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       + +   +     +      A+L+                     +   
Sbjct: 304 TANGKSAVLINIARQPSSNTVAVADEVAAEMAVLKRNLPRGVDVQPFYDQSSLVREAIKS 363

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   L  I++ + +   +  LVA   I + +++T+  L   G +  L ++ G+ 
Sbjct: 364 VRDAIVIGLVLATIIIVLFLRDWRSSLVAGLVIPVTLLVTILFLRFTGQSFNLMTLGGLA 423

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF--- 478
             IGL +D  I+V E I       Q    ++          +  S IT ++  + L    
Sbjct: 424 AAIGLVIDDAIVVVENIVLHRDSGQGRIEAVRSAIREITVPLIGSTITPIVVFLPLIGVT 483

Query: 479 FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R  A+TM +S+L S+  A++   ++ + I+R +  +    +        P   
Sbjct: 484 GVTGSFFRALALTMTVSLLTSLALALTWTPSLSLIILRARPQRKDVSSDEDPHGHGPWMG 543

Query: 539 AIQFMRARFW 548
            +     R  
Sbjct: 544 KVIAWHRRAL 553



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 78/224 (34%), Gaps = 7/224 (3%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A  PV +  V S  ++ Q               +   +    ++VA    +      + 
Sbjct: 279 TAGVPVHIGDVASVQQAAQPKYTIVTANGKSAVLINIARQPSSNTVAVADEVAAEMAVLK 338

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI-AMLIYIWIRFKWYFALGAITTLIL 702
             +P             + RE I+     ++I  + A +I +     W  +L A   + +
Sbjct: 339 RNLPRGVDVQPFYDQSSLVREAIKSVRDAIVIGLVLATIIIVLFLRDWRSSLVAGLVIPV 398

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T+ F    G  FNL  +  +   IG  ++D +VV + +   +    +     + + 
Sbjct: 399 TLLVTILFLRFTGQSFNLMTLGGLAAAIGLVIDDAIVVVENI---VLHRDSGQGRIEAVR 455

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAF 803
            +I E     + +++   +  LP+    G       + A+ M  
Sbjct: 456 SAIREITVPLIGSTITPIVVFLPLIGVTGVTGSFFRALALTMTV 499



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 72/173 (41%), Gaps = 13/173 (7%)

Query: 662  SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL-ILDITKTLGFFALFGIEFNL 720
             ++  R+    +++S   +   +   F+ ++A  AI     L +   +    + G  FN+
Sbjct: 888  QQKSFRELFQVLLLSLALVFAVLLTEFRDFWAPTAILMSSALSVIGVIVALLITGTTFNV 947

Query: 721  TAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
            ++   ++ +IG    + +++ D   R R+        +S  D +  +    L     T++
Sbjct: 948  SSFMGLIMVIGIVAKNGILLIDADQRFRRE------GMSPYDAMVNASKRRLRPIAMTAL 1001

Query: 778  AAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            AA   +LP+A     G  ++   AI +  GI ++   S+ +   +   +   +
Sbjct: 1002 AATTGMLPLAFALGAGSQMLQPLAIAVIGGITISLFLSLIVTPTMYFLLTRHK 1054


>gi|116620699|ref|YP_822855.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223861|gb|ABJ82570.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1034

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 72/612 (11%), Positives = 164/612 (26%), Gaps = 40/612 (6%)

Query: 27  LPQSMLDRFPSA-MPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEG 85
                +   P+   P   +S GL               + +   +    +     +    
Sbjct: 29  FRLLPVSPLPAVDFPTISVSAGL----------PGASPETMAASVATPLERQFGRIAGVS 78

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISI 145
               S       ITL F  SR  +     V   +      L  +   N          S 
Sbjct: 79  EMTSSSGLGSTSITLQFDLSRDIDAAGRDVQAAINAARGYLPANLPGNPTYRKVNPADSP 138

Query: 146 VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQL 205
           +     +                    ++       Q +     L  +  E +P  + + 
Sbjct: 139 IFM-LALTSGTYRKAAMYDAASTIMAQKLSQLSGVGQVVVGGSSLPSVRVELNPDTVNKY 197

Query: 206 LGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKT 265
                ++       N +     F                     +G       A      
Sbjct: 198 GLGFEQVRTTLASANANTPKGHFS--------------------NGHQTWEVGATDQIFK 237

Query: 266 HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTI 325
            +    +     G               +  + +G           I   +   +   T+
Sbjct: 238 AEDYNRLIVSYHGGSAIRVSDIGEAVDSVEDLRNGGYANGKPSVLVIIFRQPGANIIDTV 297

Query: 326 ETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGK 385
           +        L+A         V          S    + T  I   LV++V+F+ +  G+
Sbjct: 298 DGIRATLPQLKASIPSAIDMRVAMDQTVTIRASVHDVEWTLLISLVLVILVVFLFLRNGR 357

Query: 386 WGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKN 445
             ++   ++ +++I T  ++ L+  ++   S+  + +  G  VD  I+V E I     + 
Sbjct: 358 TTVIPAIAVPVSLIGTFGVMYLMHYSVDNLSLMALTISTGFVVDDAIVVVENITRYLEQG 417

Query: 446 QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFT 502
                +   G      T+   +++ +   + L   G   G   R FA+ + ++I +SM  
Sbjct: 418 MKPMEAALKGAQEIGFTVLTISVSLIAVFIPLLLMGGIVGRLFREFAVVLSIAIFVSMLV 477

Query: 503 AISIVRAMMIFI-----IRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +++    M   +        +  ++ +        L    + +    A    + +    +
Sbjct: 478 SLTTTPMMAAHLLKLHTAHGRMYQATERAFDWVVNLYGRSLNVVLRHAFITLMILMGTIA 537

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
           +     +      +     G +   V A++      +   L        S    D    F
Sbjct: 538 LNVYLFVRVPKGFFPEQDTGRLSGSVQADQDTSFQHMDEMLLRYVNVIDSDPAIDTVNGF 597

Query: 618 LVRLQYQPGDSV 629
               +    +S 
Sbjct: 598 TGGGRGGATNSA 609



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 53/143 (37%), Gaps = 6/143 (4%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           +     + + +  T G   L     +  ++ A+    G+ V+D +VV + +    +    
Sbjct: 360 VIPAIAVPVSLIGTFGVMYLMHYSVDNLSLMALTISTGFVVDDAIVVVENI---TRYLEQ 416

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            +   +   K   E     +  S++     +P+ + GG V      FA+ ++  I V+  
Sbjct: 417 GMKPMEAALKGAQEIGFTVLTISVSLIAVFIPLLLMGGIVGRLFREFAVVLSIAIFVSML 476

Query: 811 SSIFIAAPILLFIYDWRAKNARI 833
            S+     +   +      + R+
Sbjct: 477 VSLTTTPMMAAHLLKLHTAHGRM 499


>gi|116327707|ref|YP_797427.1| cation/multidrug efflux pump [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120451|gb|ABJ78494.1| Cation/multidrug efflux pump [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 1065

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 62/567 (10%), Positives = 166/567 (29%), Gaps = 41/567 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +    +L+  +   GL+      +        P+     R                  
Sbjct: 10  RRHITTFMLFVAVGIFGLISIPRLPISLMPPSNSPAITILTR--------------YPGI 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +    +E  S +      + S  + +++I + F         + +V   +  
Sbjct: 56  SPSKIEEIITKPIEEQISGVGGIEDILSSSEEGESRINVIFKPGTKISYRSLEVRSKIDL 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +      + ++  ++        I + +   +       E       +   +    +   
Sbjct: 116 IRGNFPREVEEPAILRYDPTNKPIFIVKLESE--RYKLKELREFGENKYKKKFERIDGVS 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  + D  +L Q      ++                          N  
Sbjct: 174 EIHVGGGFQREINIDIDKGKLLQTGVGLEEVLSKIRT-------------------ANVD 214

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           +    + I   ++N        +  +            +  +     N+        D  
Sbjct: 215 VPAGNLLIGDNYINIRVIGKLIQIKEIGKIPITVGKSEQIVYLSDISNVKDGFKEKEDIA 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +   ++     L   L +  +      +          + + 
Sbjct: 275 RDAGKEVVSIYVQKAGDAN---SLALCEELRKELSSIHIEGIQQSINYDQSQTIKTAIAK 331

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      + ++VLF+ +      ++   SI L++I T  L+      + + S+ G+ 
Sbjct: 332 VADSAISGGIIAVVVLFLFLRNFYATILVSVSIPLSIISTFGLMYFFNVGINVISLCGLA 391

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           LG+G+ VD +++V +RI   +++N  V   +    S     +F S +T++     +FF  
Sbjct: 392 LGVGMLVDCSVVVIDRIFFVHQENGFVEDGILKASSGLSKELFASVLTSIAVFFPIFFSS 451

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
                   G AIT+  S++ S+  +++ +  +  FI+  +      + P      I    
Sbjct: 452 RELRDLYGGLAITVSASLVTSLIVSLTFLPTLAKFILTKESRFQTLVPPQYVLRYISKMK 511

Query: 539 AIQFMRARFWGVGISILFSICSICLLF 565
           +   +   +  +       +     L 
Sbjct: 512 SYIEVGTYYKILSWLRNKILRRQTNLN 538



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 81/227 (35%), Gaps = 4/227 (1%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L S++      + +   K     L  + GD    + V+++         P +       
Sbjct: 813  ELSSIKKEKAESRIYRKNKRRTYGLTAKLGDIDTGSAVIKIETALKKISFPENYHYEMTG 872

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               K+         + ++   I + I   +   +      I T+       +    +  +
Sbjct: 873  NYKKLKESKTEMFNLIILAFIIIVCILSSLFESFLLPFLIILTIPFSAAGVILILFVCRM 932

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTS 776
              N++     + L G +VN+ +++ +   + +K         +L+ + I E +   + T+
Sbjct: 933  SLNISVYIGFVMLAGITVNNSILIVETFLEKLKSNQY-YEIDELLTEGIRERIRPILITT 991

Query: 777  MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +   + +LP  +    G  +    A+ +  G+ ++ + ++F+     
Sbjct: 992  ITTVLGLLPSVLDSGEGSQLWRPLAVTVVAGLSISTALTVFLFPAFF 1038



 Score = 75.1 bits (182), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 40/271 (14%), Positives = 91/271 (33%), Gaps = 5/271 (1%)

Query: 556 FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
               +   +   G    I   G I + V  +  +      SN++     +      D  K
Sbjct: 221 LIGDNYINIRVIGKLIQIKEIGKIPITVGKSEQIVYLSDISNVKD-GFKEKEDIARDAGK 279

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
             +     + GD+ +     E+ K+  +  +              I   + +     +  
Sbjct: 280 EVVSIYVQKAGDANSLALCEELRKELSSIHIEGIQQSINYDQSQTIKTAIAKVADSAISG 339

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             IA+++       +Y  +    ++ L I  T G    F +  N+ ++  +   +G  V+
Sbjct: 340 GIIAVVVLFLFLRNFYATILVSVSIPLSIISTFGLMYFFNVGINVISLCGLALGVGMLVD 399

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             VVV DR+    +               +++ L  SV TS+A F  +     +    + 
Sbjct: 400 CSVVVIDRIFFVHQENGFVEDGILKASSGLSKELFASVLTSIAVFFPI----FFSSRELR 455

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                +A  +  +  +S+ ++   L  +  +
Sbjct: 456 DLYGGLAITVSASLVTSLIVSLTFLPTLAKF 486


>gi|145636974|ref|ZP_01792638.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           PittHH]
 gi|145269832|gb|EDK09771.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           PittHH]
          Length = 1026

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 9   RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 50

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 51  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 111 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 168 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 228 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKESD 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 268 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 328 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 388 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 448 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 496



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 764  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGTSSGDAIAWLQQQAND 823

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 824  NLPQ-GYTYDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 878

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF + G   N+ +   ++TL+G      +++ +  ++    Y  
Sbjct: 879  VPLAVSGALVSLNLLSFFGIAGTTLNIYSKVGLITLVGLITKHGILMCEVAKEEQLNYGK 938

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSF--AIPMAFGIVVAAS 810
            +    + I  +    L   + T+ A    ++P +   G   +  F   I +  G+ +   
Sbjct: 939  TR--IEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSMGIVIVAGLSIGTI 996

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 997  FTLFVLPVVY 1006



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 301 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 474

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 475 VALTLSPMMSSKLLKSNAKP 494


>gi|57168903|ref|ZP_00368033.1| probable integral membrane component of efflux system Cj1033
           [Campylobacter coli RM2228]
 gi|305431946|ref|ZP_07401113.1| AcrB/AcrD/AcrF family protein [Campylobacter coli JV20]
 gi|57019739|gb|EAL56425.1| probable integral membrane component of efflux system Cj1033
           [Campylobacter coli RM2228]
 gi|304445030|gb|EFM37676.1| AcrB/AcrD/AcrF family protein [Campylobacter coli JV20]
          Length = 1005

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 77/667 (11%), Positives = 190/667 (28%), Gaps = 51/667 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++ +  +   GL+ A    +        P     ++I+      G  + V     
Sbjct: 8   RPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIKITSKIN------GDLNFV----- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S +        +     +   + F   +  E  A+ V   +  +
Sbjct: 57  ----ESKVTKEIENALSEIDGVKTITSTAYDNFSVSVVEFKLGKNLEVAANDVRDKIGTL 112

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L   P+   + + +   IS+ L            ++   EI  +    +   +   +
Sbjct: 113 --SLPSKPEIEKISSDSGSAISLFLY-------SKDKLQLMREINDKIKPFLQRIDGVGK 163

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  E  P+ LR+       ++      N  +                 + 
Sbjct: 164 IEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYIIKGYFE 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  E+S + +                            F     NI           +
Sbjct: 224 ATNLEELSNLRIKT------------------------GVFLSDIANISSLYEDEKQSAL 259

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    I+       +L           +            S  
Sbjct: 260 YEGKEGVLLELGKITNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQV 319

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L L+++F+ +      L+A  +I  ++I T  ++ LLG  L   +   + L
Sbjct: 320 IFDMVLGIFLTLVIVFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTL 379

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLD--MGFSRAYSTIFDSNITALIATVVLFFF 480
            IG+ +D  I+V E I ++ +    +  +         +  +I    +   I    +   
Sbjct: 380 SIGIFIDDAIVVIENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSI 439

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G       I++   I+IS   ++ ++ ++    +  K+ K  +        +      +
Sbjct: 440 SGLFFNALGISVASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENL 499

Query: 541 QFMR-ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
            +          ++ L  I     L T      +  +   ++ VL     DLS+     +
Sbjct: 500 LYKILQNKVKFILATLVFIGFSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEK 559

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           SL + +    + + +  FL+       D+      +++       +   + +        
Sbjct: 560 SLNLLEKIKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQ 619

Query: 660 KISRELI 666
             S ++ 
Sbjct: 620 DESLKIK 626



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 7/200 (3%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                      V   +     +I    +I         I + L +     V+   + ++I
Sbjct: 274 TNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVI 333

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                      L A   +   I  T     L G + N     A+   IG  ++D +VV  
Sbjct: 334 VFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI- 392

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +N+     +          INE     +  S+      +P++      G    +  I
Sbjct: 393 ---ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGI 449

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +A GIV++   S+F+   I
Sbjct: 450 SVASGIVISFLVSVFLIPSI 469



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 93/256 (36%), Gaps = 9/256 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +++  S++                KN  V++     D         ++    
Sbjct: 747 ISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQKLLLDNMD 806

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             +    ++         +  E ++   + V ++ + + + +   ++ +   L  + T+ 
Sbjct: 807 KILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFILPLIIMITMP 866

Query: 702 LDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           L     ++G F + G  F+L  + A++ L G    + +++ D      K     +     
Sbjct: 867 LAFGGASIGLF-ITGHNFSLFVLIAIILLFGMVGKNAILLVDVAN---KKCHEGLDPDKA 922

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  +    L   + T+ A   ++LP+A+    G       AI + FG++ +   ++ +  
Sbjct: 923 LLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLISSTLLTLLVVP 982

Query: 818 PILLFIYDWRAKNARI 833
            +  F +   +K  +I
Sbjct: 983 ALFKFCFKLDSKLRKI 998


>gi|323692867|ref|ZP_08107092.1| hypothetical protein HMPREF9475_01955 [Clostridium symbiosum
           WAL-14673]
 gi|323503042|gb|EGB18879.1| hypothetical protein HMPREF9475_01955 [Clostridium symbiosum
           WAL-14673]
          Length = 1004

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 81/622 (13%), Positives = 191/622 (30%), Gaps = 49/622 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +++    V+    +   G+          + L++ P       I                
Sbjct: 10  LKHPVTTVMALLCLIVFGITSVF-----SAKLEQMPDMETPMLI---------VRAGYSG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    ++  S L+       +       + L +      +   D +   L+
Sbjct: 56  AGPEDICELVTEPIEDAISTLEGVKTMSSTSSDGSAMVMLEYDYGTDMDEAYDNLKKKLE 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                +  D   +++  +     +++LS ++  Q           + +  + +     S 
Sbjct: 116 NAKRNIPDDVDTSIMEMSMNAGTTMMLSISHSRQEN-----LYDYVDQNIVPEFERISSV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +  E    +L Q   T + ++      N +          L  S    
Sbjct: 171 AEVSAMGGSSEYIKIELLSEKLEQYGLTMSDVTSAISTANLAYPSGEAVAGNLELSVTTS 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
              E   E+                     DI                NI +        
Sbjct: 231 LETEQVGEL--------------------PDIPIATATGELVMLSDVANIYEAKEDRGGV 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                        + +   +          + A L AG   +    V      + L S  
Sbjct: 271 SRYNGEETISLSITKQQSNTAMEVSSAVKSVIATLEAGDEDLH-INVANDTSESILDSLM 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               T  +   + +IV+F+     K  L+   SI  +++++L  ++  G +L + +++ +
Sbjct: 330 DVAVTMVLAVIISMIVIFLFFGDYKASLIVGSSIPTSILMSLIAITAAGFSLNVITMSAL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQS-----VFCSLDMGFSRAYSTIFDSNITALIATV 475
           VLG+G+ VD++I+V E        ++         +   G +   ++I  S IT  +  +
Sbjct: 390 VLGVGMMVDNSIVVLESCFRATAGSRDKGILGYSRAALEGTALVGNSIIGSTITTCVVFL 449

Query: 476 VLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            L       G   +    T+   +  S+ +A++IV    +F    +  K++   P+ RF 
Sbjct: 450 PLAGIQGMTGQMFKPLGYTVVFCMAASLLSAVTIVPLCYLFYKPAETQKAVMSLPIERFQ 509

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGVLANRPVDL 591
                +  + ++ +   +  S+     ++ L           D  G + + +     +  
Sbjct: 510 RFYRQVMEKLLKRKGMVMLASVAILAATVYLASGMQAELMTSDDTGTVSVSIETRPGLLQ 569

Query: 592 SVVRSNLESLQIGDISFQNFDG 613
             V   LE  +    + +N D 
Sbjct: 570 EKVNDALEQAEAVVAADENVDS 591



 Score = 83.2 bits (203), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/238 (15%), Positives = 88/238 (36%), Gaps = 13/238 (5%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + +  +   D        +K + + +         +  +   V              + +
Sbjct: 769 TQVADVIFKDSPSSISKTDKAYEITISGDYTGGNTKAAIDSEVISPNLTGTISLGTNSRD 828

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
            +  +    L       +  +   + + +  +F+   F++  +TT+   +  + GF  + 
Sbjct: 829 RMMQEEFGSLYS----AIAFAVFLVFVVMASQFESVKFSVMVMTTIPFSLVGSFGFLKIT 884

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G+  ++T +   L LIG  VN+ ++  D     +  Y   +     + ++    +   + 
Sbjct: 885 GVTISMTTLLGFLILIGTVVNNGILYVD----TVNQYRQEMDLHTALVEAGATRIRPILM 940

Query: 775 TSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           TS+   +S++PMA+     GS     AI    G+ V    ++F+  P+   +   R K
Sbjct: 941 TSLTTILSMIPMALAIGSSGSTTQGIAIVDIGGLAVGVIVALFML-PVYYGLLSRRPK 997



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 50/432 (11%), Positives = 125/432 (28%), Gaps = 11/432 (2%)

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
               S    V  +         +     +        + +L      A   I D   T++
Sbjct: 70  EDAISTLEGVKTMSSTSSDGSAMVMLEYDYGTDMDEAYDNLKKKLENAKRNIPDDVDTSI 129

Query: 472 I-----ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
           +     A   +      + +          ++  F  IS V  +       + +K   ++
Sbjct: 130 MEMSMNAGTTMMLSISHSRQENLYDYVDQNIVPEFERISSVAEVSAMGGSSEYIKIELLS 189

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                + +        +             +      + T      +     I +     
Sbjct: 190 EKLEQYGLTMSDVTSAISTANLAYPSGEAVAGNLELSVTTSLETEQVGELPDIPIATATG 249

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V LS V +  E+ +      +    E   L   + Q   ++  +  ++ V   +    
Sbjct: 250 ELVMLSDVANIYEAKEDRGGVSRYNGEETISLSITKQQSNTAMEVSSAVKSVIATLEAGD 309

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               I         I   L+   +  V+   I+M++       +  +L   +++   I  
Sbjct: 310 EDLHINVANDTSESILDSLMDVAVTMVLAVIISMIVIFLFFGDYKASLIVGSSIPTSILM 369

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MRKNMKLYTTS-ISFRDLIDKS 764
           +L      G   N+  ++A++  +G  V++ +VV +   R          + +     + 
Sbjct: 370 SLIAITAAGFSLNVITMSALVLGVGMMVDNSIVVLESCFRATAGSRDKGILGYSRAALEG 429

Query: 765 INETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                   + +++   +  LP+A      G +       + F +  +  S++ I  P+  
Sbjct: 430 TALVGNSIIGSTITTCVVFLPLAGIQGMTGQMFKPLGYTVVFCMAASLLSAVTIV-PLCY 488

Query: 822 FIYDWRAKNARI 833
             Y        +
Sbjct: 489 LFYKPAETQKAV 500


>gi|15597716|ref|NP_251210.1| Resistance-Nodulation-Cell Division (RND) divalent metal cation
           efflux transporter CzcA [Pseudomonas aeruginosa PAO1]
 gi|107101966|ref|ZP_01365884.1| hypothetical protein PaerPA_01003013 [Pseudomonas aeruginosa PACS2]
 gi|218891502|ref|YP_002440369.1| Resistance-Nodulation-Cell Division (RND) divalent metal cation
           efflux transporter CzcA [Pseudomonas aeruginosa LESB58]
 gi|254235517|ref|ZP_04928840.1| Resistance-Nodulation-Cell Division (RND) divalent metal cation
           efflux transporter CzcA [Pseudomonas aeruginosa C3719]
 gi|9948575|gb|AAG05908.1|AE004679_2 Resistance-Nodulation-Cell Division (RND) divalent metal cation
           efflux transporter CzcA [Pseudomonas aeruginosa PAO1]
 gi|126167448|gb|EAZ52959.1| Resistance-Nodulation-Cell Division (RND) divalent metal cation
           efflux transporter CzcA [Pseudomonas aeruginosa C3719]
 gi|218771728|emb|CAW27502.1| Resistance-Nodulation-Cell Division (RND) divalent metal cation
           efflux transporter CzcA [Pseudomonas aeruginosa LESB58]
          Length = 1051

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 62/596 (10%), Positives = 150/596 (25%), Gaps = 62/596 (10%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  +G+         +  +D  P                 +++ ++++          
Sbjct: 16  VLLAVLGMAGVGIGSYQKLSIDAVPDI---------------TNVQVQINTAAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +    + + + L          R   +++T+ F +         +V   L     +
Sbjct: 61  VEQRITYPVETVMAGLPGLQETRSLSRPGISQVTVIFEEGTDIYFARQQVNERLSTAREQ 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH------AIEQSMEIIRQRIDQIGISES 179
           L  D    L   +T      + +    +             +           Q+   + 
Sbjct: 121 LPEDISPTLGPISTGLGEIYLWTVEAEEGATKEDGSAYTPTDLRTIQDWIIRPQLRNVKG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         Q     DP +L     T   +    +  N +        R  +     
Sbjct: 181 VAEINTIGGYAKQFLIAPDPKKLAAYKLTLGDLQNAVLRNNENVGAGYIERRGEQLLIRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+D  +I G                    I    +            +G    +   
Sbjct: 241 PGQVKDMDDIRG--------------------IIVSNVDGVPIRIRDVAEVGLGKELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +  G     +          I           + 
Sbjct: 281 AATENGREVVLGTVFMLIGENSREVAQAVGQRLEEINRTLPKGVKAITVYDRTTLVDKAV 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+ VLF+ +   +  L+    I L+++ T   +     +  L S+  
Sbjct: 341 ATVKKNLVEGAALVIAVLFLFLGNIRAALITATIIPLSMLFTFTGMVGNRVSANLMSLGA 400

Query: 420 IVLGIGLAVDSNILVNER-----IREENRKNQSVFCS-----LDMGFSRAYSTIFDSNIT 469
           +  GI   VD  +++ E         +    + +  +     +      A   +    I 
Sbjct: 401 LDFGII--VDGAVVIVENAIRRLAHAQAHHGRQLTRAERFHEVFAASREARRALVFGQII 458

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++  + +F      G      A T+  ++L +M  +++ V A +   I  K  +  +  
Sbjct: 459 IMVVYLPIFALTGVEGKMFHPMAFTVVTALLGAMILSVTFVPAAIALFITGKVKEEENFV 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                      +            G      +  +              +G   + 
Sbjct: 519 MRRARLAYEPALRWVLGHRALVVGGALGAILLTGLVASRMGSEFIPSLSEGDFAMQ 574



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+  GI  +++A    + L G +V + +V+   +R    L     S    +
Sbjct: 915  FALTGGVLALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIR---NLLQEGRSLDQAV 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 972  WEGAITRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTMLTLLVLPV 1031

Query: 819  ILLFIYDW 826
            +  + +  
Sbjct: 1032 LYRWTHGR 1039


>gi|327405179|ref|YP_004346017.1| CzcA family heavy metal efflux pump [Fluviicola taffensis DSM
           16823]
 gi|327320687|gb|AEA45179.1| heavy metal efflux pump, CzcA family [Fluviicola taffensis DSM
           16823]
          Length = 1453

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 77/673 (11%), Positives = 181/673 (26%), Gaps = 44/673 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV--DEDDFVN 67
           L   I  + L+      L Q  +D  P                   ++     +  + + 
Sbjct: 14  LMISIMIVALIGWGAYSLNQLPIDAVPDITNNQ-----------VQIITSSPSNGAEDIE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
            F+    ++  + +          R   + +T+ F +         +V   L   +  + 
Sbjct: 63  RFVTFPVEQSMATIPDIEEVRSFSRFGLSVVTVVFKEEVDVYWARQQVNERLNDASKTIP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNID---QVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
                  +   T     I     +     +    A E           Q+   E      
Sbjct: 123 QGMGIPEMAPLTSGLGEIYQYVIHPKKGYEDNYDATELRTIQDWIIRRQLLGVEGIADVS 182

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                L Q     DP +L+ +      +       N +  G     +       ++ L++
Sbjct: 183 SFGGFLKQYEISLDPDKLKSMNVGVNDVFTALQKNNQNTGGAYIDKKPNAYFIRSEGLIQ 242

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
              +I                    + ++  + G         +                
Sbjct: 243 SIDDIE------------------EIVVTTHDDGIPVLIRNVAEVKFGSATRYGAMTRNN 284

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
              +  A+       + +  I         +        +             +      
Sbjct: 285 DGEVVGAVVMMLKGANSSKVIANVKERMTQIEKTLPKGIVVEPFLDRTKLVNSAIGTVAK 344

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI--VL 422
             A  A +V+ VL + +   + GL+    I L ++  ++L++L G +  L S+  I   L
Sbjct: 345 NLAEGALIVIFVLVLFLGNFRAGLIVASVIPLAMLFAISLMNLFGVSGNLMSLGAIDFGL 404

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN-------ITALIATV 475
            +  AV         ++   ++ +     +D     + S I +S        +   +  +
Sbjct: 405 IVDGAVIIVEATLHHLQLRTKRTKLSQMEMDEEVYSSASKIRNSAAFGEIIILIVYLPIL 464

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            L    G   +  A T+  +IL +   +++ V  M    +  K      I+         
Sbjct: 465 ALVGVEGKMFKPMAQTVVFAILGAFLLSLTYVPMMSALFLSKKISLKRTISDRIIEGCQR 524

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK-GGIQLGVLANRPVDLSVV 594
               +     R   +   I   +   CL     +              V        S+ 
Sbjct: 525 VYAPMLRFALRSKALVAGIALGLFFFCLFLFSSMGSEFIPTLEEGDFAVETRVLTGSSLS 584

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++   + + G +   +F   K  + ++      +         +   + +    S+  N 
Sbjct: 585 QTIEAATRAGKVLKDHFPEVKQVVGKIGSSEIPTDPMPVEACDLMVILKDKSEWSSASNR 644

Query: 655 EIVGPKISRELIR 667
           E +  K+  +L  
Sbjct: 645 EGLAEKMQAKLEE 657



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 89/289 (30%), Gaps = 15/289 (5%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                   F              ++ V  +      ++R+  E        +       +
Sbjct: 226 IDKKPNAYFIRSEGLIQSIDDIEEIVVTTHDDGIPVLIRNVAEVKFGSATRYGAMTRNND 285

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-- 674
             V          A +  +    K+    +  +  +   +       +L+   I  V   
Sbjct: 286 GEVVGAVVMMLKGANSSKVIANVKERMTQIEKTLPKGIVVEPFLDRTKLVNSAIGTVAKN 345

Query: 675 ---ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
               + I + + +     +   L   + + L +   +    LFG+  NL ++ A+    G
Sbjct: 346 LAEGALIVIFVLVLFLGNFRAGLIVASVIPLAMLFAISLMNLFGVSGNLMSLGAI--DFG 403

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDL-IDKSINETLGRSVYTS-------MAAFISV 783
             V+  V++ +    +++L T       + +D+ +  +  +   ++       +  ++ +
Sbjct: 404 LIVDGAVIIVEATLHHLQLRTKRTKLSQMEMDEEVYSSASKIRNSAAFGEIIILIVYLPI 463

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           L +    G +    A  + F I+ A   S+     +       +    R
Sbjct: 464 LALVGVEGKMFKPMAQTVVFAILGAFLLSLTYVPMMSALFLSKKISLKR 512



 Score = 43.5 bits (100), Expect = 0.16,   Method: Composition-based stats.
 Identities = 39/226 (17%), Positives = 85/226 (37%), Gaps = 10/226 (4%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
               P    +    L ++   D   Q    +    + + +       ++ V E+ KK   E
Sbjct: 792  IESPTGAQIPLEQLATINFKDGPNQIQRDDAKRRIIVGFNVRGRDVESIVEEIQKKVEKE 851

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
            +   +    T     +  +    +  + V ++ + +   +++ FK       I T I  +
Sbjct: 852  VRFEAGYYPTYGGTFENLQAATARLSIAVPVALLLIFFLLYLTFKSAKQALLIFTAI-PL 910

Query: 705  TKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLI 761
            +   G  AL+  G+ F+++A    + L G +V + +V+   + +  +L         ++I
Sbjct: 911  SAIGGVIALWVRGMPFSISAGVGFIALFGVAVLNGIVL---IAEFNRLKKEGVKDTIEII 967

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                   L   + T++ A +  LPMA+    G  V    A  +  G
Sbjct: 968  KTGTAVRLRPVIMTALVASLGFLPMALSNGSGAEVQKPLATVVIGG 1013


>gi|291542400|emb|CBL15510.1| Cation/multidrug efflux pump [Ruminococcus bromii L2-63]
          Length = 1345

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 62/786 (7%), Positives = 204/786 (25%), Gaps = 39/786 (4%)

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                  + V   +    ++  S +        +     + + + F D    ++    + 
Sbjct: 49  TYAGQTPEAVETTVSKPLEQSMSAIDGVKEITSTSSDNYSLLMIEFEDGTNMDSATVDMR 108

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L  +            L+      + + ++    D       E S  +  + ++++  
Sbjct: 109 SSLDTIKGNWPDGVGTPYLIKINPNILPVAMTAV--DFEGKSQTELSDYVTNELLNELEG 166

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +          +  Q        +L +L            L N         V+  ++ 
Sbjct: 167 IDGVASVSDKGIVTEQENVVLSQDKLDKLNKKI-----SAALDNQFGDAEDKIVKAKKEL 221

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
             N    +D        +    +  +  + +     +  E G  +        + +  ++
Sbjct: 222 QDNIGKAKDGQGTVSSSIEQINSQQEAVSKQLADAQNKAESGKTQLLSAKMQLLDRKASL 281

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                +L                  +   +    L  + +      ++       +    
Sbjct: 282 TSTKTLLETAYQGLLELKTTYDELTSEQSQLTQKLEQLSKFNEQYQEIVRKMNDALPDSE 341

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
              ++ +    +          +     K   +A     +   +  +  ++    ++L  
Sbjct: 342 EYKALQQQIDELNKV-------LEPYGIKAPDIAKTMQTVQNSINKSAEAIQNVEISLEK 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +      I  A+        +I                    A S + D +++   A  +
Sbjct: 395 LGTSGDAINSALSEMSEKISQINSGI-----------AQLDNAISGLDDKSVSVDSALAL 443

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           +      A    +  M            ++ +            K +             
Sbjct: 444 ISQQQSSADFKMSSAMSTLTSKQSELNSALTQLSSAEKQIETSEKELADKKKEAKSKADV 503

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA-------NRPV 589
              +            +       +     +     +  K   +  + +          +
Sbjct: 504 SNTVTLDTISSILTAQNFSMPAGYVTDDDNNKFMVRVGDKVNDEKEMKSLVLFDTGIDGI 563

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP-- 647
            +  +    +     +          N  + L +    + A + V E +  K+  +    
Sbjct: 564 GVIHLEDVADVFVADNSDETFARINGNPGIVLSFSKSSNTASSTVCENINAKLDSLSKEV 623

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
                            +I   +  ++  + +A++I           L    ++ + +  
Sbjct: 624 DGLHFTNLYNEGDYINLVINNVLQNLLMGAVLAIIILFLFLRDIKPTLIVACSIPISVVF 683

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            +      G+  N+ +++ +   +G  V++ VVV + +    +L +  +S          
Sbjct: 684 AIVLMYFSGVTLNMISLSGLAIGVGMLVDNSVVVIENI---YRLRSMGVSPIKAALNGAR 740

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           +  G    +++      LP+    G     F + +A  +  +  +S+ +A  ++  +   
Sbjct: 741 QVAGAITASTLTTVCVFLPIVFVEGITRQLF-VDLALTVTYSLLASLIVALTLVPAMGQR 799

Query: 827 RAKNAR 832
             +  +
Sbjct: 800 MLRKMK 805



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 697  ITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
            I    + +  T GF AL   G + ++ ++   + L G  VN+ +V+ D +    KL    
Sbjct: 1199 IIMFTIPLAFTGGFLALLITGFDISVVSLVGFVMLCGIIVNNGIVLVDYIN---KLRIDG 1255

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASS 811
                + I ++    +   + T++   + ++ MA+    G  ++   AI    G++ A   
Sbjct: 1256 KERIESIVEAGKTRMRPILITALTTVLGLVVMALGIGTGAEMMQPIAIVCIGGLLYATFM 1315

Query: 812  SIFIAAPILLFIYDWRAKN 830
            +++I   I         K 
Sbjct: 1316 TLYIVPVIYDLFNKKELKK 1334


>gi|237654622|ref|YP_002890936.1| heavy metal efflux pump, CzcA family [Thauera sp. MZ1T]
 gi|237625869|gb|ACR02559.1| heavy metal efflux pump, CzcA family [Thauera sp. MZ1T]
          Length = 1079

 Score =  124 bits (309), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 73/593 (12%), Positives = 170/593 (28%), Gaps = 44/593 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV+L ++    G L A+ +    + LD  P       I          +       
Sbjct: 35  RNVFLVLLATLFLIGGGLYAVKH----TPLDALPDLSDVQVI---------VYTDYPGQA 81

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          + +  +         + + + F D         +V  +L   
Sbjct: 82  PQVVEDQVTYPLTTSMLAVPRAKVVRGFSMFGASYVYVIFEDGTDIYWARSRVLEYLSTA 141

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L       +    T        +    D       +           Q+  ++   +
Sbjct: 142 ASRLPQGVAPQIGPDATGVGWVYQYAVVGRD---MSLADTRSLQDWYVRYQLTKAQGVSE 198

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +     DP RL     T   ++      N    G +  +         +  
Sbjct: 199 VASIGGFVREYQVTVDPLRLAGYGITLDAVTQAIRASNRDVGGRVVELAEKEYMVRGRGY 258

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +I+G                    +   E G              P        +
Sbjct: 259 LQSVDDIAG-------------------IVLKAERGTPVRVGDVARIELVPAERRGIAEL 299

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    I       A +  G       +           +    
Sbjct: 300 NGEGEVASGIVMARFGQNALDVIANVKAKIAEIAPGLPTGAEIVPVYDRSELIERAIGNL 359

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T    + +V  V  + +L+ +  LVA  ++ L ++     +  LG    + S+ GI +
Sbjct: 360 KWTLLEESLIVAAVCIVFLLHVRSALVAIITLPLGILFAFIAMRSLGLGSNIMSLGGIAI 419

Query: 423 GIGLAVDSNILVNERIREENRK------NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IG  VD+ I++ E   +   +       ++   ++ +        +F S +   ++ + 
Sbjct: 420 AIGAMVDAAIVMIENAHKHIERLPAGADQKARGAAIVLACKEVGPALFFSLLIITVSFLP 479

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   ++  +   ++++V  +M+F +R + +             
Sbjct: 480 VFALEGQEGRLFSPLAFTKTFAMAGAALLSVTLVPVLMLFFVRGRILPEAKNPVNRLLIW 539

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           +   I    +R +   + +++L    ++      G  +      G    + A 
Sbjct: 540 LYRPIIQGVLRFKVLTLVLAVLAMAATLVPARQIGSEFMPTLNEGTLFYMPAA 592



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/225 (12%), Positives = 72/225 (32%), Gaps = 14/225 (6%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +     ++     V    +    E+        T     +       K  + V ++   +
Sbjct: 840  VYVDTREADLGAFVKRAQQAVAEEVEFPQGYYATWSGQFENMERAKEKMKIVVPVTLALI 899

Query: 681  LIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +++ F+     L  + ++   +   +      G + ++      + L G +    V+
Sbjct: 900  FVLLYLNFRRLTETLIVMLSVPFALVGGVWLMWWLGYQMSVAVAVGFIALAGVAAETGVI 959

Query: 740  VY---------DRMRKNMKLYTTS-ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +           R R   +          + I +   E +   + T +A    +LP+   
Sbjct: 960  MLIYLDHAWREVRARCQAEGREAGVTDLYEAIMEGAVERVRPKMMTVVAIMAGLLPIMWS 1019

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G  V+   A PM  G+V +   ++ +   +   +  W  + +
Sbjct: 1020 TGTGSEVMSRIAAPMVGGMVSSTVLTLAVIPALYALVKQWELRRS 1064



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 56/158 (35%), Gaps = 6/158 (3%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S I   + I        AL AI TL L I          G+  N+ ++  +   IG  V+
Sbjct: 367 SLIVAAVCIVFLLHVRSALVAIITLPLGILFAFIAMRSLGLGSNIMSLGGIAIAIGAMVD 426

Query: 736 DKVVVYDRMR---KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             +V+ +      + +       +    I  +  E      ++ +   +S LP+    G 
Sbjct: 427 AAIVMIENAHKHIERLPAGADQKARGAAIVLACKEVGPALFFSLLIITVSFLPVFALEGQ 486

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               F   A    F +  AA  S+ +   ++LF    R
Sbjct: 487 EGRLFSPLAFTKTFAMAGAALLSVTLVPVLMLFFVRGR 524


>gi|253702521|ref|YP_003023710.1| acriflavin resistance protein [Geobacter sp. M21]
 gi|251777371|gb|ACT19952.1| acriflavin resistance protein [Geobacter sp. M21]
          Length = 1077

 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/611 (12%), Positives = 189/611 (30%), Gaps = 33/611 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +    ++ +    +GL   +         +  P  +               +  +     
Sbjct: 17  SKLTPLIVAASLLLGLYSIVAT-----PREEEPQIVVPMV---------DIYFPMPGSSP 62

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   L    ++    +K         R     IT+ F      EN   K+   +    
Sbjct: 63  KEVEERLINTFEKKIWEIKGVEYLYSVSRPGMGMITVRFLVGEDMENSLVKLYNKVMSNR 122

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           + L     + L+V+ +  ++ I+      D+   HA+ +   + R+  D +   ++    
Sbjct: 123 NLLPPGAAEPLVVSKSIDDVPILSLTLWSDRYDHHALRR---VARELCDDLQKVDNVANS 179

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                +  +L    D +RL     T   +       N +++                  +
Sbjct: 180 EIRGGVSRELKVSLDAARLSSYALTPVAVMGALERGNVAQRAGDISSGNRDYKLEAGSFI 239

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +   + ++         +    V     E     FF +      K L         
Sbjct: 240 STPDDARRLVVSVKDGRPVYLSDVATVTDGVQEPKDYVFFGLGPAAAEKGLKGGAADY-- 297

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                     + +   +  +  E         +   +P ++ +   RN G      +   
Sbjct: 298 ---PAVTISIAKRKGANATWVAEDLLKRVEFQKGKIIPSEMQVTVTRNYGETAKDKNDEL 354

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                +A + + +L  + +  + G VA  +I + + LT+ + + +G TL   ++  ++  
Sbjct: 355 LFHMFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMFIFNRIGYTLNRITLFALIFS 414

Query: 424 IGLAVDSNILVNERIREEN-RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
           IG+ VD  I+V E I             +         +    + +  + + + + F G 
Sbjct: 415 IGILVDDAIVVVENIHRYFTTTRLKPLEAAVRAVDEIGNPTMLATLAVIASILPMGFVGG 474

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFII----RYKKMKSIDINPLSRFFLIP 535
             G  +R   +   ++++ S+  A+++        +     Y      + + ++RF+   
Sbjct: 475 LMGPYMRPIPVGASMAMVFSLLIALTVTPYFAYRFMKGESHYGSEAPPEESWMTRFYRRI 534

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTH---GLNYGIDFKGGIQLGVLANRPVDLS 592
               +   + R+  +   +L    S+ L++           D K  +QL V A     L 
Sbjct: 535 MGRLLHDKKVRYGFLATVVLLLFFSVSLIYFKAVTVKMLPFDNKSELQLIVDAPEGTTLE 594

Query: 593 VVRSNLESLQI 603
                +  L  
Sbjct: 595 ENARMVAELGE 605



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/156 (17%), Positives = 66/156 (42%), Gaps = 5/156 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + ++AI++ I I +   W     A   + + +  T+  F   G   N   + A++  IG 
Sbjct: 358 MFLAAISVTILIAVFMGWRAGAVAAIAIPVTLALTMFIFNRIGYTLNRITLFALIFSIGI 417

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +VV + + +     TT +   +   ++++E    ++  ++A   S+LPM   GG 
Sbjct: 418 LVDDAIVVVENIHRYFT--TTRLKPLEAAVRAVDEIGNPTMLATLAVIASILPMGFVGGL 475

Query: 793 V---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           +   +    +  +  +V +   ++ +          
Sbjct: 476 MGPYMRPIPVGASMAMVFSLLIALTVTPYFAYRFMK 511



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 9/156 (5%)

Query: 669  GIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
                 ++  I +L+  W R  +      +  + L +   L   AL G  F  T++   + 
Sbjct: 908  AAFAAVMVLIYVLVVAWFR-DFTTPFVIMAPIPLTLIGILPGHALMGAFFTATSMIGFIA 966

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L G  V + +++ D     ++     ++  + I  +        + T+ A  +    +  
Sbjct: 967  LAGIIVRNSIILID--FAELRR-REGMALDEAIIDAGAIRFRPMLLTAAAVVVGSFVILF 1023

Query: 789  WGGSVIGSFAIPMAFG-IVVAASSSIFIAAPILLFI 823
                +    A+ M  G I     S I I  PIL F+
Sbjct: 1024 --DPIFQGLALAMMCGEIASTTLSRITI--PILYFM 1055


>gi|229592364|ref|YP_002874483.1| multidrug efflux protein [Pseudomonas fluorescens SBW25]
 gi|229364230|emb|CAY51923.1| putative AcrB/AcrD/AcrF RND family transmembrane transporter
           [Pseudomonas fluorescens SBW25]
          Length = 1019

 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/465 (11%), Positives = 145/465 (31%), Gaps = 25/465 (5%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V  ++     +  +  +       S RQ  + I++        + +  ++     
Sbjct: 54  SSAESVQSYITQPLQKSLASAQGIDYMKSSSRQNISIISIYGRVGADSDRLFTELLAKTN 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V ++L  +    +L        +++    + +  I +  + +  + R    ++      
Sbjct: 114 EVRNQLPREIDDPILSKVAADNTALMYLSFSSE--IMNNAQITDYLSRVIQPRLVTLPGM 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +          +    DP +L     + ++++      N           ++  S    
Sbjct: 172 AEAQIIGNQSFAMRLWLDPIKLAGFGLSASEVTQAIKRYNVQPTAGDVTGEYVVTSIQTN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +                     + +    I     G  +        +          
Sbjct: 232 TEL--------------------HSVEGFNAIPLKTKGDSQVRLGDVARVELGSQNYDSF 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              +     +    L   L++   P     +   +      S  
Sbjct: 272 STFNGIPALYISIKPAPDANPLELAKHVRELLPQLQSQIPPGLDVDIAYDSTLYINASID 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
               +      +V++V+F+ +   +  ++   +I L++I TL  + ++G ++ + ++  +
Sbjct: 332 QVLSSLVEAIVIVVLVVFLFLGSLRSAVIPVVTIPLSLIGTLFFMQVMGYSINVLTLLAM 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
           VL IGL VD  I+V E I     + +S   +   G       +    IT       + F 
Sbjct: 392 VLAIGLVVDDAIVVMENIHRHIERGKSPLEAAIRGAREICVPVLSMTITLAAVYTPIGFL 451

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
               G   + FA+T+  +++IS   A+++   M   ++R ++   
Sbjct: 452 QGLTGALFKEFALTLAGAVVISGIVALTLSPMMCAVLLRPEEQPK 496



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               A+  + T+ L +  TL F  + G   N+  + A++  IG  V+D +VV + +    
Sbjct: 354 SLRSAVIPVVTIPLSLIGTLFFMQVMGYSINVLTLLAMVLAIGLVVDDAIVVMENIH--- 410

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      S  +   +   E     +  ++       P+       G++   FA+ +A  +
Sbjct: 411 RHIERGKSPLEAAIRGAREICVPVLSMTITLAAVYTPIGFLQGLTGALFKEFALTLAGAV 470

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNAR 832
           V++   ++   +P++  +     +  +
Sbjct: 471 VISGIVAL-TLSPMMCAVLLRPEEQPK 496



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 62/156 (39%), Gaps = 6/156 (3%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++   + + +  +F+    +L  + T+ L I   L    L     N+     ++TLIG 
Sbjct: 852  GLALAIIGLVLAAQFESLRDSLVILVTVPLSIAGALIALFLGWSTLNIYTQIGLVTLIGL 911

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
                 +++ +    N       +S R  ++++    L   + T++A  + V+P+ +    
Sbjct: 912  ISKHGILIVE--FANQLRKEQGLSPRAAVEEAAAIRLRPILMTTLATVLGVIPLILSSGA 969

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            G        + +A G+ +    ++F+   +   +  
Sbjct: 970  GAVSRFDIGLVIATGMSIGTLFTLFVLPSVYAALTK 1005


>gi|157373351|ref|YP_001471951.1| CzcA family heavy metal efflux protein [Shewanella sediminis
           HAW-EB3]
 gi|157315725|gb|ABV34823.1| heavy metal efflux pump, CzcA family [Shewanella sediminis HAW-EB3]
          Length = 1045

 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/577 (13%), Positives = 160/577 (27%), Gaps = 45/577 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    ++I+  MI   G+       L  + LD  P       I                 
Sbjct: 11  KQRLMVLIITIMITVWGV-----QELRNTPLDALPDLSDVQVI---------IKTPFPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APKLVEEQVTYPLSTAMLAVPGAKTVRGYSFFGDSYVYVIFEDGTDIYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V+S+L    + +L    +                     +           ++       
Sbjct: 117 VSSRLPQGIQPSLGPDASGVGWIFEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +        +P +L       A +       N    G +  +         + 
Sbjct: 176 EVATVGGMEQTYQIVIEPDKLAIYKLDIASIKNAIAKSNTEAGGSVIEMAEAEYMVRAKG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +   I L   + +  P   K V  I       R   E+  +             
Sbjct: 236 YRQTLDDFREIPLGITSPSGTPLLLKDVATIRKGPASRRGIAELDGE------------- 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +   TIE        L+AG       I           S   
Sbjct: 283 ----GEVVGGIIIMRYGENALATIEAVKDKLEQLKAGLPEGVEIIPTYDRSQLIESSVEN 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + +L+ +  LVA  ++ L +++   +++ +G    + S+ GI 
Sbjct: 339 LLHKVVEEMFVVGLVCLLFLLHARSTLVAVITLPLAILIAFIVMNKMGVNANIMSLGGIA 398

Query: 422 LGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIFDSNITAL 471
           + IG  VD  I++ E + +              N+  +  +          +F S +   
Sbjct: 399 IAIGAVVDGAIVMIENMHKHLEHFKEKYQRPPNNKEHWKIVTEASIEVGPALFFSLLIIT 458

Query: 472 IATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ V +F      G      A T   ++  +   +I++V  +M F IR K  K       
Sbjct: 459 LSFVPVFALEAQEGRLFSPLAYTKTFAMAAAALLSITLVPILMGFFIRGKIPKETSNPIS 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
                I        +R     + I+++  + +   L 
Sbjct: 519 RVLIAIYKPSLTLVLRFPKITLVIAVITLLSAWYPLN 555



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 79/230 (34%), Gaps = 13/230 (5%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-- 667
                E   L+   +   +  +    ++  K+ +  ++ +    +    G     + +   
Sbjct: 812  MLKSENGRLISWVFVDIEGTSIGEYIDEAKQALDNVLTIPPRYSYGFAGQYEYMQRVDAK 871

Query: 668  -KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             K ++ + +  I +L+ +         +  + +L   +  +           ++     +
Sbjct: 872  LKKVIPMALGVIFILLMMTFGSTLQAGII-MLSLPFALVGSTWLLYALEYNMSVAVAVGM 930

Query: 727  LTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            + L G +    VV+        + RK    Y +    ++ + +     +     T    F
Sbjct: 931  IALAGVAAEFGVVMLVYLNNAIKHRKETGGYESVTDLKEALIEGAVMRIRPKAMTVATIF 990

Query: 781  ISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              +LP+      G  V+   A PM  G+V A   S+F+   + L IY  +
Sbjct: 991  FGLLPIMWGSGAGNDVMQKIAAPMIGGMVTAPLLSLFVLPALYLIIYGRK 1040



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 78/229 (34%), Gaps = 15/229 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + E V +    +   +       L+ K +  
Sbjct: 287 GGIIIMRYGENALATIEAVKDKLEQLKAGLPEGVEIIPTYDRSQLIESSVENLLHKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             ++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MFVVGLVCLLFLLHAR----STLVAVITLPLAILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRM-------RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + M       ++  +    +     ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENMHKHLEHFKEKYQRPPNNKEHWKIVTEASIEVGPALFFSLLIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           P+          F   A    F +  AA  SI +   ++ F    +   
Sbjct: 463 PVFALEAQEGRLFSPLAYTKTFAMAAAALLSITLVPILMGFFIRGKIPK 511


>gi|121593639|ref|YP_985535.1| CzcA family heavy metal efflux protein [Acidovorax sp. JS42]
 gi|120605719|gb|ABM41459.1| heavy metal efflux pump, CzcA family [Acidovorax sp. JS42]
          Length = 1039

 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/557 (11%), Positives = 146/557 (26%), Gaps = 49/557 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L  +M+   G+       +  + +D  P       I                  
Sbjct: 12  NRFLVLLATAMLTAWGVW-----GVRSTPVDALPDLSDVQVI---------IRTNYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGFSFFGDSFVYVLFEDGTDLYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    K  L    T                 +   +           ++    +  +
Sbjct: 118 QGRLPATAKPALGPDATGVGWIFQY-ALVDRTGKNDLAQLRALQDWFLKFELKSLPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L     + A++    +                     NQ  
Sbjct: 177 VASVGGMVKQYQVVLDPIKLASYGLSQAQVRDALMA-------------------ANQET 217

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +E+SG       + +     +          G              P        +
Sbjct: 218 GGSVLELSGAEYMVRASGYLKTLDEFREIPLTARGGVPVRLGDVAMLQIGPEMRRGIAEL 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI       A L+    P    +           +    
Sbjct: 278 DGEGEVAGGVVVLRSGKNAQETIAAVKAKLAELQGSLPPGVEIVTTYDRSALIERAIRNL 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  S+ L V+    ++   G    + S+ GI +
Sbjct: 338 TTKLGEEFLVVALVCALFLWHLRSALVAIISLPLGVMTAFLVMRYQGINANIMSLGGIAI 397

Query: 423 GIGLAVDSNILVNERIR-----------EENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            +G  VD+ +++ E               +  + +  +  +          +F S +   
Sbjct: 398 AVGAMVDAAVVMIENAHKKLEAWQHAHPNQRLQGKERWDVITQAAEEVGPALFFSLLIIT 457

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++  +   +++++  +M + IR +          
Sbjct: 458 LSFIPVFTLEAQEGRLFGPLAFTKTYAMPAAAGLSVTLIPVLMGYWIRGRIPDEQKNPIT 517

Query: 529 SRFFLIPDCIAIQFMRA 545
                         +R 
Sbjct: 518 RILIAAYRPALEWVLRR 534


>gi|29345709|ref|NP_809212.1| AcrB/AcrD/AcrF family cation efflux protein [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253567697|ref|ZP_04845108.1| cation efflux system [Bacteroides sp. 1_1_6]
 gi|29337602|gb|AAO75406.1| cation efflux system (AcrB/AcrD/AcrF family) [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251841770|gb|EES69850.1| cation efflux system [Bacteroides sp. 1_1_6]
          Length = 1038

 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/652 (11%), Positives = 196/652 (30%), Gaps = 14/652 (2%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +   +    LL+       Q  +D  P         L ++L+ G     E   ++    F
Sbjct: 13  VTICMVVFALLLLGKVSYDQLSVDLLPDLNNP---RLFIELKAG-----ERPPEEIEKQF 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           ++              +    ++    +IT+ +  ++  +     +   +         D
Sbjct: 65  VKNMESMAIRQSDVTQVS-SVIKAGTARITVEYTWTKDMDEAFLDLQKAMNPFAQN--KD 121

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
             +  +         +VL   +   +     E          +++   E   +   S   
Sbjct: 122 ITELKITQHDANLSPVVLVGMSHQSIT-DMAELRKIAESYIRNELIRLEGVAEVTLSGEE 180

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           +  L  + DP +L         ++      N S  G       L+    +  L   + + 
Sbjct: 181 VSTLTIQTDPYKLDAFQLKIEDIASRIESNNQSISGGRVSELGLQYLVKSSSLFASEDDF 240

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             + +       +  +       +         F      +    A   +   +      
Sbjct: 241 ENLIVGYKAIQQEEASGNNASGTATANSNKAPVFLKEVATVQFLNARPENIVRINGKRSI 300

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                 + + +    ++      A++          ++          +    K +  + 
Sbjct: 301 GLSIYKEMRFNTVKVVDEVTRQLAVIENALPGYHFQVIS-NQGTFIKSAIGEVKSSAVLG 359

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             L ++VLF+ +      L+   +I ++++ T  L+   G +L + ++ G+ LG G+ VD
Sbjct: 360 VILAIVVLFVFLRRMGTTLIVSLAIPISIVATFNLMFFNGLSLNIMTLGGLALGAGMLVD 419

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
           + I+V E I     K  S+  +   G +   + +  S +T ++  + + +  G +   F 
Sbjct: 420 NAIVVIESIFRNQEKGLSIKEAAINGTAEVANAVIASTLTTIVVFLPIVYLHGASGELF- 478

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
                ++  S+ +++ +   ++  +      K + +  +    +      ++ +  R W 
Sbjct: 479 KDQAWTVTFSLVSSLFVAILVIPMLYIQLSGKKVKLEEVKSIRITGYSRVLRKLIQRRWL 538

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           V    +  +    LL        +          +   P    + R++     + ++ + 
Sbjct: 539 VIGMAVLLLIVTGLLTPFIGTEFMPRAESKTFTAVIKMPEGTQMERTSAAVGNLEELLYA 598

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              G+    V      G               +  I+      + E V    
Sbjct: 599 IVGGDSLCTVYSHIGEGSGSENAIFEGENTAMMKVILSPECTLSPEKVIASF 650



 Score = 94.0 bits (231), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 105/247 (42%), Gaps = 7/247 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                V   + ++  G    +     ++ + ++      S +  +V   V++ +  I   +
Sbjct: 790  TQEFVLQEIVTITHGQAPKEILRRNQSRIGKVMANMDASKSLDKVAAEVRETVKGIELPA 849

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
                T     +  +E +   +  +++S + + + +  +F+        + T+ L +   +
Sbjct: 850  NYSITVTGEEEKRQESMNSLLFALMLSVVLVYMVMASQFESLLHPFTILLTIPLAVVGAI 909

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              F + G   N+  V  ++ L G +VN+ +++ DR+    +L    +   D I ++  + 
Sbjct: 910  LLFFITGTTINMMGVIGIVMLGGIAVNNSIILVDRIN---QLSQAGMELTDAIVEAGQQR 966

Query: 769  LGRSVYTSMAAFISVLPM-AVWG-GSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   + T++   +++LPM   +G G+ + S  AI +  G++ +   S+ +   +   + +
Sbjct: 967  IRPIIMTTLTTILAMLPMTFSFGEGASLRSPMAIAVIGGLITSTLMSLMVIPCVYYVLEN 1026

Query: 826  WRAKNAR 832
             + +  R
Sbjct: 1027 IKRRINR 1033



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 68/205 (33%), Gaps = 11/205 (5%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             +      I   +P    Q     G  I   +       V+   +A+++      +   
Sbjct: 317 DEVTRQLAVIENALPGYHFQVISNQGTFIKSAIGEVKSSAVLGVILAIVVLFVFLRRMGT 376

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T       G+  N+  +  +    G  V++ +VV + +    +   
Sbjct: 377 TLIVSLAIPISIVATFNLMFFNGLSLNIMTLGGLALGAGMLVDNAIVVIESI---FRNQE 433

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
             +S ++       E     + +++   +  LP+       G +    A      +  + 
Sbjct: 434 KGLSIKEAAINGTAEVANAVIASTLTTIVVFLPIVYLHGASGELFKDQAWT----VTFSL 489

Query: 810 SSSIFIAAPILLFIY-DWRAKNARI 833
            SS+F+A  ++  +Y     K  ++
Sbjct: 490 VSSLFVAILVIPMLYIQLSGKKVKL 514


>gi|157363173|ref|YP_001469940.1| protein-export membrane protein SecD [Thermotoga lettingae TMO]
 gi|157313777|gb|ABV32876.1| protein-export membrane protein SecD [Thermotoga lettingae TMO]
          Length = 474

 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 124/528 (23%), Positives = 211/528 (39%), Gaps = 70/528 (13%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR +   ++   ++   G  +AL    P         A    RI LGLD++GG+ L   V
Sbjct: 1   MRTDRIRLV-IVIVAIFGAFLAL--LWPSEEQTYRGLAAIFQRIPLGLDIKGGARLEYRV 57

Query: 61  DEDDFVN---GFLQMYSDELRSFLKKEGIGVFSM----RQIQNKITLSFADSRFKENIAD 113
           D D+ V      +      LR+ L   G    ++    R+  + I +    +        
Sbjct: 58  DIDENVENPSEVIDDVWTVLRNRLDAAGYTEATVRKTFRENNSFIVVEIPAATDTTRAEK 117

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +         +                     +   +     +           +  D 
Sbjct: 118 LLGSTGLMYFGQ---------------------VIDESQIDPQNDP---------RLKDL 147

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
             + ++        +I   +                       V         +     +
Sbjct: 148 AKLKKAEWLPSRDGKIWYLVRT-----------------EVMLVKDLKLVSPQIVSASPV 190

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
            ++   ++  +   E+S                      S                  K 
Sbjct: 191 PETRVGRFGYKVTFELSSKDSEIFKKITQQLVVPESAIGSSSSK-------------EKR 237

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           LA+VLD  V  A  +   IP GKA+I+GNF++E A  LAA+LR+G+LP +L  +    V 
Sbjct: 238 LAIVLDDVVQFAGYVISVIPDGKAEITGNFSLEEAKQLAAILRSGALPARLEKISAGWVA 297

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
             LGSD +     A + GL +++++MI  YG  G++AD ++  N  L L +L+   + LT
Sbjct: 298 PLLGSDIVKTSLWAGIIGLFVVLIYMIFTYGVQGIIADIALVYNTFLLLGVLAATHSILT 357

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           LP IAGI+  IG  VD NI++ ER+REE +  +SV  ++   F R + T+FD+N+T +IA
Sbjct: 358 LPGIAGIIFTIGTTVDGNIIIAERVREELKSGKSVKAAISSAFGRCFITLFDANLTTIIA 417

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
            + L++FG G V+GFAIT+ + +L S F  I + R +   +  + +  
Sbjct: 418 GLALYYFGTGTVKGFAITLIIGVLGSFFVNIVLSRLLTDALSSFIRKP 465



 Score =  119 bits (296), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 76/179 (42%), Gaps = 4/179 (2%)

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +   V P +  ++++  +   II    +LIY+   +     + A   L+ +    LG  A
Sbjct: 292 SAGWVAPLLGSDIVKTSLWAGIIGLFVVLIYMIFTYGVQ-GIIADIALVYNTFLLLGVLA 350

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
                  L  +A ++  IG +V+  +++ +R+R+ +K   +  S +  I  +        
Sbjct: 351 ATHSILTLPGIAGIIFTIGTTVDGNIIIAERVREELK---SGKSVKAAISSAFGRCFITL 407

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              ++   I+ L +  +G   +  FAI +  G++ +   +I ++  +   +  +  K A
Sbjct: 408 FDANLTTIIAGLALYYFGTGTVKGFAITLIIGVLGSFFVNIVLSRLLTDALSSFIRKPA 466


>gi|187931049|ref|YP_001891033.1| transporter, AcrB/AcrD/AcrF family [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187711958|gb|ACD30255.1| transporter, AcrB/AcrD/AcrF family [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 1037

 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/524 (11%), Positives = 150/524 (28%), Gaps = 39/524 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     + +  MI  +G+         +  + ++P                         
Sbjct: 9   RRPVLSLSISFMIIVVGVGS-----FFKLQVRQYPYIDSATIT---------VTTSYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +  F+    +      K             + IT+         ++  +V   +  
Sbjct: 55  NPATIQAFVTRPLEAAVGSSKGIDYMTSESALGTSTITVYVKLGYNTNDVLSEVVQNVNS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L  D     +          ++          +  E S  I  +   ++       
Sbjct: 115 ILNQLPQDAYSPAIKLNPADNFPSLILAFTSK--TMNTSEISAYINSELTPKLLAEGGLS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +   +    + +R+ +   T  +++      +    G      +L  +     
Sbjct: 173 EINVWGNMPYAMRIYPNKTRMAEYGITPTELATAIGSNSLVSAGGQIQGPYLNYT----- 227

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                                  T +   ++   +   +         +           
Sbjct: 228 ---------------LNPETSMSTAQEYRNLIIKKSYNQIVRLSDVARVELGAQNYNSSV 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                    A      + +    +         ++A         V   +      S   
Sbjct: 273 YFDGKNAVLAGTVVSPEENPLDVVNRLVKQLPNIKASLPNGLNVDVAYNSTLYIESSIDE 332

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V IV+F+ +   +  +V   +I L++I +  L+S++G ++ L ++  ++
Sbjct: 333 VLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLMSIMGFSINLLTLLAMI 392

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E I     +    F +   G     + +    +T ++    +   G
Sbjct: 393 LAIGLVVDDAIVVLENIYRHIEEGMEPFAAAIKGAREIANPVILMTLTLIVVYAPIGMMG 452

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
              G     FA ++  ++LIS   A ++   M   ++  + M S
Sbjct: 453 GFTGQLFTEFAYSLAGAVLISGIVAYTLSPMMCSKVLNREMMSS 496



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 59/485 (12%), Positives = 142/485 (29%), Gaps = 20/485 (4%)

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP--SIAGIVLG 423
            + +  +V +  F  +   ++  +   +I +      A  + + A +T P  +  G   G
Sbjct: 17  ISFMIIVVGVGSFFKLQVRQYPYIDSATITVTTSYPGANPATIQAFVTRPLEAAVGSSKG 76

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYSTIFDSNITALI 472
           I      + L    I    +   +    L                 AYS     N     
Sbjct: 77  IDYMTSESALGTSTITVYVKLGYNTNDVLSEVVQNVNSILNQLPQDAYSPAIKLNPADNF 136

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +++L F               S L     A   +  + ++      M+          +
Sbjct: 137 PSLILAFTSKTMNTSEISAYINSELTPKLLAEGGLSEINVWGNMPYAMRIYPNKTRMAEY 196

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I        + +         +        L              + +    N+ V LS
Sbjct: 197 GITPTELATAIGSNSLVSAGGQIQGPYLNYTLNPETSMSTAQEYRNLIIKKSYNQIVRLS 256

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V       Q  + S             +     + +     L      I   +P     
Sbjct: 257 DVARVELGAQNYNSSVYFDGKNAVLAGTVVSPEENPLDVVNRLVKQLPNIKASLPNGLNV 316

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFF 711
           +            I + +  ++ + I + I +++        +  I  + L I  +    
Sbjct: 317 DVAYNSTLYIESSIDEVLHTLLEAVIIVSIVMFLFLGSLRAIIVPIIAIPLSIIGSFFLM 376

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
           ++ G   NL  + A++  IG  V+D +VV + +    +     +       K   E    
Sbjct: 377 SIMGFSINLLTLLAMILAIGLVVDDAIVVLENI---YRHIEEGMEPFAAAIKGAREIANP 433

Query: 772 SVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            +  ++   +   P+ + G   G +   FA  +A  ++++   +  ++  +   + +   
Sbjct: 434 VILMTLTLIVVYAPIGMMGGFTGQLFTEFAYSLAGAVLISGIVAYTLSPMMCSKVLNREM 493

Query: 829 KNARI 833
            ++++
Sbjct: 494 MSSKL 498



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 98/291 (33%), Gaps = 17/291 (5%)

Query: 552  ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
             S                  G  +    ++  L +  V LS + +     Q   ++    
Sbjct: 741  YSFQVIPQLARNEMLTQEQLGNIYIRSNEMNKLFDSEVPLSALVTFKTEGQPLTLNTFQQ 800

Query: 612  DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                     +        A   V  +VK  + E    +   +        +  +     V
Sbjct: 801  LNASTISAVMAPGITQGQAIEYVQSVVKSMLPEGFSYNFSGSARQYIENGNTMM-----V 855

Query: 672  GVIISAIAMLIYIWIRFK-WYFALGAITTLILDI---TKTLGFFALFGIE---FNLTAVA 724
                + + + + +  +F+ +  +L  + T+ + I      L      G      N+    
Sbjct: 856  AFAFAIVLIFLALSAQFESFRDSLVILVTIPMAISGALIPLYVGQYLGASWASLNIYTQL 915

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++TLIG      ++V +    N       ++  D I  S ++ L   + T  A  + V+
Sbjct: 916  GLVTLIGLISKQGIMVVE--FANHLQKHNGMNKYDAIVTSSSQRLRPILMTVSAMVVGVI 973

Query: 785  PMAV-WGGSVIGS--FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            P+    G   I      + ++ G+V+ A  S+F+   + ++I   ++K+ +
Sbjct: 974  PLVTSSGAGAISRNCIGVVISSGLVIGAIFSLFVLPVVYMYIASDKSKSVK 1024


>gi|302869621|ref|YP_003838258.1| MmpL domain-containing protein [Micromonospora aurantiaca ATCC
           27029]
 gi|302572480|gb|ADL48682.1| MmpL domain-containing protein [Micromonospora aurantiaca ATCC
           27029]
          Length = 726

 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/578 (12%), Positives = 174/578 (30%), Gaps = 61/578 (10%)

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
            P    A+   +     +   +        + A +      I     V          + 
Sbjct: 118 TPDGRYALIQVQFAGGADEVTDEQRDAYEKVGAQAEAQGWQIAPGGEVLNGEPEVGSTEA 177

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
              +VA +VL++ F  ++     ++         +  L  LS      +   I  ++LG+
Sbjct: 178 IGVLVAAIVLVITFGSLVAAGMTMLNALIGVGVGMAGLFALSGAVELTSTAPILALMLGL 237

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            + +D ++ +  R R+      S   ++      A S +  +  T ++A   L   G   
Sbjct: 238 AVGIDYSLFITSRHRQNLLDGLSPEEAVGRAVGTAGSAVVFAGATVVVALAGLAVVGIPF 297

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           +    +    ++ +++  AI++  A++ F       + +                  F  
Sbjct: 298 LTVMGLAAAGTVTVAVLVAITLAPALLGFAGHKVLPRKLRDRKAVEDPTTGSEDRSGFGF 357

Query: 545 ARFWGVGISILFS-------------------------------ICSICLLFTHGLNYGI 573
                V    +                                   +          +G 
Sbjct: 358 RWARWVTRLRIPVILVGLLGLGLLAIPAQDMRLALPDASAAAEGTPARVSSDLIREGFGP 417

Query: 574 DFKGGIQLGVLANRPVDLSVVR-------SNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            F G + + V A+ P                 + +        +  G    +  +     
Sbjct: 418 GFTGRLAVVVTADSPQATQAAIPQVTALVQKTDGVLAVAPPQVDPSGRTALIGVIPKTGP 477

Query: 627 DSVAQTRVLEMVKKKITEI-VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA-MLIYI 684
              A   V+  ++K+++ I      +     VG  +S +L     V +++     +L+ +
Sbjct: 478 TEEATETVVHDIRKQVSGIQNADVLLTGVTAVGIDVSEKLSDALPVYLLLVVGLSILLLM 537

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFA----------LFGIE-----FNLTAVAAVLTL 729
            +       + A    +L +  T G             L G++      +   +  +  L
Sbjct: 538 LVFRSILVPVKAALGFLLTVAATFGITVAVFQQGHLADLVGLDTPAPLVSFLPILLIGIL 597

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            G +++ +V +  RMR+    +    + +      +     R V  +    ISV    V+
Sbjct: 598 FGLAMDYEVFLVSRMRE---DFVHGDTAQQATINGMGH-GARVVTAAALIMISVFGGFVF 653

Query: 790 -GGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYD 825
               +I S    +A G+ + A    + I   ++  + +
Sbjct: 654 LEDPIIKSMGFALAIGVAIDAFVVRMTIVPAVMSLLNN 691



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 5/162 (3%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE--FNLTAVAAVLTL 729
            + +   A+++ I         +  +  LI       G FAL G     +   + A++  
Sbjct: 177 AIGVLVAAIVLVITFGSLVAAGMTMLNALIGVGVGMAGLFALSGAVELTSTAPILALMLG 236

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +   ++  + +  R R+N+      +S  + + +++       V+      +++  +AV 
Sbjct: 237 LAVGIDYSLFITSRHRQNLLD---GLSPEEAVGRAVGTAGSAVVFAGATVVVALAGLAVV 293

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           G   +    +  A  + VA   +I +A  +L F         
Sbjct: 294 GIPFLTVMGLAAAGTVTVAVLVAITLAPALLGFAGHKVLPRK 335


>gi|148926059|ref|ZP_01809745.1| putative integral membrane component of efflux system
           [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845538|gb|EDK22630.1| putative integral membrane component of efflux system
           [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 1005

 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/542 (11%), Positives = 153/542 (28%), Gaps = 50/542 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++ +  +   GL+ A    +        P     ++I+      G  + V     
Sbjct: 8   RPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIKITSKIN------GDLNFV----- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S +        +     +   + F   +  E  A+ V   +  +
Sbjct: 57  ----ESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAANDVRDKIGTL 112

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L   P+   + + +   IS+ L            ++   EI  +    +   E   +
Sbjct: 113 --SLPSKPEIEKISSDSGSAISLFLY-------SKDKLQLMREINDKIKPFLQRVEGVGK 163

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  E  P+ LR+       ++      N  +                 + 
Sbjct: 164 IEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYIIKGYFE 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  E+S + +                            F     NI           +
Sbjct: 224 ATNLEELSNLRIKT------------------------GVFLSDIANISSLYEDEKQSAL 259

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                         A  +    I+       +L           +            S  
Sbjct: 260 YEGKEGVLLELGKIANYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQV 319

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L L+++F+ +      L+A  +I  ++I T  ++ LLG  L   +   + L
Sbjct: 320 IFDMVLGIFLTLVIVFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTL 379

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLD--MGFSRAYSTIFDSNITALIATVVLFFF 480
            IG+ +D  I+V E I ++ +    +  +         +  +I    +   I    +   
Sbjct: 380 SIGIFIDDAIVVIENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSI 439

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G       I++   I+IS   ++ ++ ++    +  K+ K  +        +      +
Sbjct: 440 SGLFFNALGISVASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENL 499

Query: 541 QF 542
            +
Sbjct: 500 LY 501



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/194 (18%), Positives = 64/194 (32%), Gaps = 7/194 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                V   +     +I    +I         I + L +     V+   + ++I      
Sbjct: 280 EMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIVFLFLR 339

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L A   +   I  T     L G + N     A+   IG  ++D +VV     +N+
Sbjct: 340 NLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI----ENI 395

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                +          INE     +  S+      +P++      G    +  I +A GI
Sbjct: 396 AKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGISVASGI 455

Query: 806 VVAASSSIFIAAPI 819
           V++   S+F+   I
Sbjct: 456 VISFLVSVFLIPSI 469



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 93/256 (36%), Gaps = 9/256 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +++  S++                KN  V++     D         ++    
Sbjct: 747 ISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQKLLLDNMD 806

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             +    ++         +  E ++   + V ++ + + + +   ++ +   L  + T+ 
Sbjct: 807 KILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFILPLIIMITMP 866

Query: 702 LDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           L     ++G F + G  F+L  + A++ L G    + +++ D      K     +     
Sbjct: 867 LAFGGASIGLF-ITGHNFSLFVLIAIILLFGMVGKNAILLVDVAN---KKCHEGLDPDKA 922

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  +    L   + T+ A   ++LP+A+    G       AI + FG++ +   ++ +  
Sbjct: 923 LLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLISSTLLTLLVVP 982

Query: 818 PILLFIYDWRAKNARI 833
            +  F +   +K  +I
Sbjct: 983 ALFKFCFKLDSKLRKI 998


>gi|145632273|ref|ZP_01788008.1| acriflavine resistance protein [Haemophilus influenzae 3655]
 gi|144987180|gb|EDJ93710.1| acriflavine resistance protein [Haemophilus influenzae 3655]
          Length = 1026

 Score =  124 bits (309), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 9   RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 50

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 51  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 111 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 168 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 228 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKESD 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 268 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 328 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLHSFNFSINLMTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 388 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 448 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 496



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 77/194 (39%), Gaps = 15/194 (7%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKG-IVGVIISA--IAMLIYIWIRFK-WYFALG 695
              + +    +  Q         +R+L+++G  + V  +   I + + + I+F+     + 
Sbjct: 815  AWLQQHANDNLPQGYTYDFKSEARQLVQEGNALAVTFALAVIIIFLVLAIQFESIRDPMV 874

Query: 696  AITTLILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + ++ L +         L FF++ G   N+ +   ++TL+G      +++ +  ++   
Sbjct: 875  IMISVPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEE-- 932

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIV 806
                  +  + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ 
Sbjct: 933  QLNHGKTRIEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLS 992

Query: 807  VAASSSIFIAAPIL 820
            +    ++F+   + 
Sbjct: 993  IGTIFTLFVLPVVY 1006



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 301 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPILAIPISLIGVLMLLHSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 474

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 475 VALTLSPMMSSKLLKSNAKP 494


>gi|297570089|ref|YP_003691433.1| acriflavin resistance protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926004|gb|ADH86814.1| acriflavin resistance protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 1033

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/520 (12%), Positives = 150/520 (28%), Gaps = 39/520 (7%)

Query: 3   NNPWLVIL----YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVL 58
           N+    +L      +   I +LI   +   Q  +  FP   P                  
Sbjct: 2   NSLPRWLLGHRHAVLAALIAVLIFGLDARLQLPVQLFPDTDPPMVT---------VITPY 52

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                + V   +    +E  + +        + R+    + + F         A +V   
Sbjct: 53  PGMAAEEVAENISKLMEEEFAGIDGVRTLRSTSREGLAVVEVEFHYGFSSTIGAMEVQNA 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  +  +L        +   +  +  IV      +++     +       +  D++ + +
Sbjct: 113 VNRIRPQLPAAMGDPQIQEFSSAQRPIVTLALTSEEL--SLPQLRQLAENRVQDRLNLID 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                       +QL  +    R+     +  ++                         G
Sbjct: 171 GVAAVDVVGGNRLQLEVQLQRDRMAAYGLSQEQVINAL--------------------QG 210

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                       G        +   +       +                 +        
Sbjct: 211 WNLTAAGGRSREGGRETVVRFDTPLRDAADAAALVLQRQDENLLLLGDVARVRLTPGEDR 270

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                            +++ +     +    L   L+A    +   + E  +       
Sbjct: 271 AAFHYNGQPAIAVQVLKRSEANTVAVADRVFTLLQELQAEEPAVSFAVAE-DDSAFTRVV 329

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +    T A   GL ++V+ + +   +  LV   +I +  + T AL+ L G  L + +++
Sbjct: 330 ITSMTATIAGAIGLTMLVVLLFLGSFRQALVVAATIPVTFLATFALMRLAGLQLDMVTMS 389

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            I+L IGL VD +I++ E I  +     +   +   G     +      +T L   + L 
Sbjct: 390 AIILAIGLLVDDSIVILENIHRQREAGLAPEAAAIEGTGEVTAAKIGGTVTTLAVLLPLT 449

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
             G   G   R  A+T+  ++  S+  A+++V  + + I 
Sbjct: 450 LLGGFIGELFRPLALTLSFALASSLVAALTLVPLLAVIIF 489



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 54/146 (36%), Gaps = 6/146 (4%)

Query: 684  IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
            +         L  +T + L          L G   ++ A+  ++ L+G  VN+ +++ D 
Sbjct: 879  MIQFRSSLLPLVIMTAIPLQFIGVAAALTLAGKYLSMPALLGIVLLVGIVVNNSIILADF 938

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
            +   +      +     +  ++       + T+++    +LP+A+    G       A  
Sbjct: 939  I---LARRRQGMPLDQAVPAAVAARFRPVMMTALSTVAGMLPLALELAVGSERFSPIATV 995

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDW 826
            +  GI+ +   ++ +   ++  +   
Sbjct: 996  IIGGILASTLLTLVVIPVLMQLLLSR 1021



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 80/216 (37%), Gaps = 9/216 (4%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS-RELIRKGIVG 672
                + +Q           V + V   + E+       +  +     +   ++   +  
Sbjct: 276 NGQPAIAVQVLKRSEANTVAVADRVFTLLQELQAEEPAVSFAVAEDDSAFTRVVITSMTA 335

Query: 673 VIISAIA--MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            I  AI   ML+ +     +  AL    T+ +    T     L G++ ++  ++A++  I
Sbjct: 336 TIAGAIGLTMLVVLLFLGSFRQALVVAATIPVTFLATFALMRLAGLQLDMVTMSAIILAI 395

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G  V+D +V+ + +    +     ++      +   E     +  ++     +LP+ + G
Sbjct: 396 GLLVDDSIVILENIH---RQREAGLAPEAAAIEGTGEVTAAKIGGTVTTLAVLLPLTLLG 452

Query: 791 ---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              G +    A+ ++F +  +  +++ +   + + I
Sbjct: 453 GFIGELFRPLALTLSFALASSLVAALTLVPLLAVII 488



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 62/530 (11%), Positives = 146/530 (27%), Gaps = 27/530 (5%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R      IL  ++   GL +               S      +  G  L     +V  V+
Sbjct: 523  RRPAVTFILAFVLLLAGLGLIRAGGSEMMPRFDSGSFRVLLDVIPGTPLGETRQIVAAVE 582

Query: 62   EDDFVNGFLQMYSDEL--RSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                    ++  S  +   +  +  G           +I++       +      +   L
Sbjct: 583  AKILAEAAVETVSTRIGYETGARYLGGRGAMDSHQ-AEISVDLVPRNRRPESQWAIMERL 641

Query: 120  QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
            +     L        +            +   I ++     +   E+  Q +  +     
Sbjct: 642  REQVQALPGVT--LGVFQEQGGTARATTAAPIIVEINGTEPQALAELAAQTVTLLQAVGG 699

Query: 180  TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                    R   +      P  L         +   +        G        R  DG 
Sbjct: 700  V-------RDPYRNWDLDRPETL--------VVIDRERAAELGLDGSTIAATVRRAMDGE 744

Query: 240  QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
            +     +  +  + ++      D +  + + ++            V   N        L 
Sbjct: 745  RVTAYRQRGLRDLDISLRYQPEDRRQQQDLENVVLPGPAGENIRLVDLANFEPVYGPRLV 804

Query: 300  GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             R      +     +   +       +    L  +       + +   ++    A     
Sbjct: 805  SRENFRRTLEVRAWTDGRRPLSQVVADLERRLPEIETPAGYSMAIGGEQQDLAEARGRLL 864

Query: 360  SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                     V  L++I            LV   +I L  I   A L+L G  L++P++ G
Sbjct: 865  RALGAAALAVYLLLMI----QFRSSLLPLVIMTAIPLQFIGVAAALTLAGKYLSMPALLG 920

Query: 420  IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL-- 477
            IVL +G+ V+++I++ + I    R+   +  ++    +  +  +  + ++ +   + L  
Sbjct: 921  IVLLVGIVVNNSIILADFILARRRQGMPLDQAVPAAVAARFRPVMMTALSTVAGMLPLAL 980

Query: 478  -FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
                G       A  +   IL S    + ++  +M  ++          +
Sbjct: 981  ELAVGSERFSPIATVIIGGILASTLLTLVVIPVLMQLLLSRFHHSDQPRS 1030


>gi|254883057|ref|ZP_05255767.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           4_3_47FAA]
 gi|319643576|ref|ZP_07998196.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           3_1_40A]
 gi|254835850|gb|EET16159.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           4_3_47FAA]
 gi|317384745|gb|EFV65704.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides sp.
           3_1_40A]
          Length = 1027

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/617 (11%), Positives = 176/617 (28%), Gaps = 34/617 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATHVRRVRSSSTNGFSVVWVEFEWDTDIYLARQIVSEKLSLV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + +L  +  K  +   +     +++     D      ++           ++  +    Q
Sbjct: 118 SEELPENVGKPTMGPQSSILGELLIIGLTSDTTSM--LDLRTLADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +     DP+R++    T A++       N +  G +               
Sbjct: 176 VAVLGGDIKEYQVLLDPARMKHYNVTLAEVMNVTRNMNQNANGGVIYEYGNEYIVRGVLS 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D  ++S   +               V                   IG     +     
Sbjct: 236 SHDVAQLSRSVIKTVEGVPVTLEDIADVK------------------IGSQEPKLGTASE 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +   +       +   T +    L  + +     + ++    R       S    
Sbjct: 278 RGKPAVLLTVTKQPKTGTIELTEQLEAALKDLQKNLPADVHVSTDIFRQSRFIESSIGNV 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K +    A  V+IVLF+ +   +  +++  ++ L++I+++  L  +G T+   S+ G+ +
Sbjct: 338 KDSLYEGAVFVVIVLFLFLANVRTTVISLVTLPLSLIVSILTLHYMGLTINTMSLGGMAI 397

Query: 423 GIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +  R+N+        SV   +          I +S +  +++ 
Sbjct: 398 AIGSLVDDAIVDVENVWKHLRENRLLPEGERKSVIEVVFNASKEVRMPILNSTLIIVVSF 457

Query: 475 VVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LFF  G   R      I   +++  S   A+++   +  +++   K K +        
Sbjct: 458 VPLFFLTGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGNNKGKGLPKEAFVAV 517

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANRP 588
           ++                  +     + ++ L+    L         +G   + + +   
Sbjct: 518 WMKKHYRNALLWSLNHKSAVLGFTGGLFAVALVMFFTLGRSFLPSFNEGSFTINISSLPG 577

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L+         +   +S            R +            +E   +        
Sbjct: 578 ISLAESDKMGHRAEELLMSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSRQE 637

Query: 649 STIQNTEIVGPKISREL 665
                   +       +
Sbjct: 638 LVADVRAKLSTITGANI 654



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 29/300 (9%), Positives = 84/300 (28%), Gaps = 13/300 (4%)

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
               R      +              G+    D     +  +     V +++       +
Sbjct: 206 MNVTRNMNQNANGGVIYEYGNEYIVRGVLSSHDVAQLSRSVIKTVEGVPVTLEDIADVKI 265

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              +             V L            + E ++  + ++                
Sbjct: 266 GSQEPKLGTASERGKPAVLLTVTKQPKTGTIELTEQLEAALKDLQKNLPADVHVSTDIFR 325

Query: 662 SRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   I  V       +   +++           + ++ TL L +  ++      G+
Sbjct: 326 QSRFIESSIGNVKDSLYEGAVFVVIVLFLFLANVRTTVISLVTLPLSLIVSILTLHYMGL 385

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRM----RKNMKL-YTTSISFRDLIDKSINETLGR 771
             N  ++  +   IG  V+D +V  + +    R+N  L      S  +++  +  E    
Sbjct: 386 TINTMSLGGMAIAIGSLVDDAIVDVENVWKHLRENRLLPEGERKSVIEVVFNASKEVRMP 445

Query: 772 SVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++   +S +P+    G    ++    I     +  +   ++ +   +  ++     
Sbjct: 446 ILNSTLIIVVSFVPLFFLTGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGNNK 505



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 98/259 (37%), Gaps = 21/259 (8%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + ++ V   + ++    IS +N   +         +   SV       +  
Sbjct: 781  MIDTGDGQKIPVNYVADVVSAMGPNTISRENVKRKIVISANTSGRDLRSVVNDIQERIDA 840

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +                     SR L+    + +++    + + ++ +FK   A   +  
Sbjct: 841  QIKLPEGYHVEYGGQFESEQAASRTLMLTSFMSIVV----IFLLLYTQFK-NAAQSGVIL 895

Query: 700  LILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTS 754
            L L +    G FAL     E ++ A+   ++L G +  + +++       R+        
Sbjct: 896  LNLPLALIGGVFALMITTGEISIPAIIGFISLFGIATRNGMLLISHYNMLREE------G 949

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAAS 810
            +  ++ I     + L   + T++++ ++++P+A      G+ I S  A  +  G++ +  
Sbjct: 950  MELKESILHGSLDRLNPILMTALSSALALIPLAFRGDLPGNEIQSPMAKVILGGLLTSTF 1009

Query: 811  SSIFIAAPILLFIYDWRAK 829
             + FI  PI+  + + + K
Sbjct: 1010 LNAFII-PIVYELMNRKKK 1027


>gi|325677137|ref|ZP_08156805.1| membrane protein MmpL [Rhodococcus equi ATCC 33707]
 gi|325552042|gb|EGD21736.1| membrane protein MmpL [Rhodococcus equi ATCC 33707]
          Length = 761

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/516 (12%), Positives = 155/516 (30%), Gaps = 52/516 (10%)

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
             +       I    V ++LF +        +      L ++    ++ ++     + + 
Sbjct: 180 MANDLHRMEIIAIPAVAVLLFFVFGGVIAAALPLVVGGLTILGANGIVRVITHFTDVNAF 239

Query: 418 AGIVLGIG---LAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
              V+ +    LA+D  + +  R REE         ++      A  T+  S     ++ 
Sbjct: 240 VASVVSLIGLGLAIDYGLFIVSRFREELGDGYDTRTAVRRSVMTAGRTVLFSATMIAVSL 299

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM---KSIDINPLSRF 531
             L  F  G ++  A     ++L++ FT+++++ A++  + R       K       +  
Sbjct: 300 GGLILFPQGFLKSVAYGAIATVLLAAFTSVTVLPAILSILGRRIDKFGLKRFGQIKSTEE 359

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ----------- 580
                   +     R        +     + ++   G+ +G   +  +            
Sbjct: 360 IENSIWGRLTRWVMRNPLKVTIPIVVGLLLLIIPMTGIKFGGINEDYLPPDNTTRVAQEQ 419

Query: 581 --------------LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                         L +   +   +  +             F      K+ +  L+    
Sbjct: 420 FDELFPGNRTEPVKLVIDGAQGTQVGQILKTASEAPGLVEKFTITGPAKDGVQVLKAGLV 479

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
           D       ++ ++           +  T  +       L+    + V    I   + +++
Sbjct: 480 DRNNSAETIDYLRSMPVPDGVQVLVGGTPAIEQDSISALLDNLPLMVASVLIVTTLLMFL 539

Query: 687 RF-KWYFALGAITTLILDITKTLGFFALFGI-------------EFNLTAVAAVLTLI-G 731
            F      + A+    L +  TLG      I                   +  ++ +I G
Sbjct: 540 AFGSIVLPIKAVLMSALGLGSTLGILTWIFIDGHGADALGFTPGPITSPVLVLIVAIIYG 599

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG- 790
            S++ +V +  RM +     +   S  + I      T GR +  +    I V     +  
Sbjct: 600 LSIDYEVFLLSRMVE---ARSQGASTTEAIRIGTAHT-GRIITAAALILIVVTGAFGFSE 655

Query: 791 GSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYD 825
             ++   A  M   +++      +F+   ++  + D
Sbjct: 656 LVMMKYIAYGMIAALIIDATLIRMFLVPAVMKLLGD 691


>gi|288960926|ref|YP_003451265.1| copper efflux system membrane protein [Azospirillum sp. B510]
 gi|288913234|dbj|BAI74721.1| copper efflux system membrane protein [Azospirillum sp. B510]
          Length = 1037

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/650 (11%), Positives = 173/650 (26%), Gaps = 54/650 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R  P ++I   +I   G+LIA         +D  P   P               +V E 
Sbjct: 10  LRQRPLVLIAALLITGWGVLIA-----RDMPIDLLPDLHPPM-----------VTIVTEA 53

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                + V   +    + + + +        +     + I + F           +VT  
Sbjct: 54  GGYAPEEVEQLITYPMELVLNGMPGVSRIRSASSPGFSLIYVEFTWGTDPNRNRQQVTER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  V  +L      +L   ++   +++ L     D       E +   +R    ++   E
Sbjct: 114 IGMVRERLPAGVVPHLAPMSSVMGLAMQLVVQAPDLDPMALREVADWTVR---PRLMAVE 170

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              Q       + Q     +P  +  L  T  ++         +  G    +        
Sbjct: 171 GVSQVYVVGGDVRQFRFTPNPVAMNMLGITLTQVEQALTAFGGNSSGGFNDLYNTEFIIR 230

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           N        ++                      +      +R         +     V  
Sbjct: 231 NVARSRSLDDL--------------------RSLVVTYRDSRPVLLSQIGEVSFAAKVKR 270

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV-EERNVGADLG 357
                                +          +   L                       
Sbjct: 271 GEGAFNGEPAVLLAILKHPTANSVALAGRVEDMLEELAPSLPKGVEARKISYSQADLISA 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S    +        +V IVL   +   +   ++  +I +++I+T+  L L+G+T+   ++
Sbjct: 331 SVDNVEDVLRDAIVIVAIVLAAFLWSARTTAISLLAIPVSLIVTIITLKLMGSTINTMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVF------CSLDMGFSRAYSTIFDSNITAL 471
            GI +GIG  VD +++  E        N+           +        S I  +    L
Sbjct: 391 GGIAIGIGQLVDDSVVYVENTLRRLGDNRRRHRPLEVIEVIMRASQEVRSGIIYATAIIL 450

Query: 472 IATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           +  + LF   G   R      +   +SI  S+  ++++  A+  +++   K      +  
Sbjct: 451 LVFLPLFALPGEQGRLFGPLGVAYIVSIFASLLVSLTVTPALCAYLLPNMKHLEESHDGR 510

Query: 529 SRFFLIPDCIA---IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
              +L               R      + L  + ++ L            +G + + +L 
Sbjct: 511 LIRWLKRLNGRALGWALDHPRALLGATAGLVVLSALALPLLPRSFLPPFNEGTLYVQLLN 570

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
              + L+         +   +             R +         +   
Sbjct: 571 RPGISLAESSRVGAMAEQIIMQVPEVVSVARRTGRNEDDEDADPVNSSEF 620



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 87/253 (34%), Gaps = 10/253 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +    +RPV LS +     + ++              L  L++   +SVA    +E + 
Sbjct: 245 VVTYRDSRPVLLSQIGEVSFAAKVKRGEGAFNGEPAVLLAILKHPTANSVALAGRVEDML 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI-- 697
           +++   +P                      +  V+  AI ++  +   F W     AI  
Sbjct: 305 EELAPSLPKGVEARKISYSQADLISASVDNVEDVLRDAIVIVAIVLAAFLWSARTTAISL 364

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLYTT 753
             + + +  T+    L G   N   +  +   IG  V+D VV  +    R+  N + +  
Sbjct: 365 LAIPVSLIVTIITLKLMGSTINTMTLGGIAIGIGQLVDDSVVYVENTLRRLGDNRRRHRP 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAAS 810
            +   ++I ++  E     +Y +    +  LP+    G     F    +     I  +  
Sbjct: 425 -LEVIEVIMRASQEVRSGIIYATAIILLVFLPLFALPGEQGRLFGPLGVAYIVSIFASLL 483

Query: 811 SSIFIAAPILLFI 823
            S+ +   +  ++
Sbjct: 484 VSLTVTPALCAYL 496



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 89/266 (33%), Gaps = 6/266 (2%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
              D        +    P     + S    +     +    +     +V      G  ++ 
Sbjct: 763  DADRTPETLAQMRMETPAGYVPLSSVATIVNAAGPNQIMRESGMRRIVLTANTDGSDMSA 822

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
                       T + P            +     +  G+  V I+ + +++Y   R    
Sbjct: 823  IAASMRAVIAATPLPPGYNTLLEGSFRQEEESRPVMAGLCAVSIALVFLVLYQRYR-SVV 881

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             +L  +  + L +   +    LFG + +L A+   + + G +V + V+       N+ L+
Sbjct: 882  LSLVVMANIPLALIGCVAALVLFGQDLSLAAMIGFIAVTGVAVRNGVLKISHFI-NLALH 940

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVV 807
                + R LI +   E L   + T+++A ++++P+       G  ++   A+ +  G++ 
Sbjct: 941  EGVPTGRGLIMRGCEERLTPVLMTALSAGLALIPLLFSSDMPGTEILHPVAVAIFGGLIS 1000

Query: 808  AASSSIFIAAPILLFIYDWRAKNARI 833
            +          +         +  R+
Sbjct: 1001 STLLDTLTTPVLFQCFGQEALERLRV 1026


>gi|257455085|ref|ZP_05620325.1| cation efflux system protein CzcA [Enhydrobacter aerosaccus SK60]
 gi|257447517|gb|EEV22520.1| cation efflux system protein CzcA [Enhydrobacter aerosaccus SK60]
          Length = 1046

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/602 (9%), Positives = 149/602 (24%), Gaps = 59/602 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  W+++       +G+         +  +D  P                   +  +  
Sbjct: 23  QNAIWVLLFVCTWIAVGVYS-----YQKLPIDAVPDITNTQ-----------VQINTQAK 66

Query: 62  EDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +   + +    +     R   +++T+ F D         ++   +
Sbjct: 67  GFTALEVEQRITYPIENAMAGIPNLELTRSISRYGLSQVTIVFKDGTDIYWARQQINQRV 126

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQ 173
           Q   S+L       +   +T                          ++           Q
Sbjct: 127 QEAQSELPAQIAPTMSPVSTGLGEIYQWVLKADPNAKKPDGTAYTPMDLREIQDWIVRPQ 186

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   +               D +R++QL  +  ++       N ++          
Sbjct: 187 LQRVKGVAEVNSIGGFEKTYVVSPDLNRMQQLNISLEQLQQALAQNNENRGAGYIEDNGQ 246

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           + +           +I    L                                   +   
Sbjct: 247 QLTVRVPGAFNGLSDIENTMLGSP--------------------NGSPIRVGDIAQVSIG 286

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +   G           +       +     +        ++       +         
Sbjct: 287 HDLRTGGATYNGKETVLGVAMMAMGGNSRTVSKAVDAKLQDIQNSLPKGVVIETVYDRTT 346

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               +    +      A LV+I+LF+ +   +  L+    I L+++ TL  ++    +  
Sbjct: 347 LVEKAIKTVQKNLVEGAILVIIILFLFLGNIRAALITACVIPLSMLFTLTGMAQKNISAN 406

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTI 463
           L S+  +  GI   VD  +++ E                      F  + +   +A   +
Sbjct: 407 LMSLGALDFGII--VDGAVVIVENCIRRLAHTQQLLKRPLTQSERFKEVFLAARQARRPL 464

Query: 464 FDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               +  L+  + +F   G         A+ + L+++ ++  +I+ V A +   ++    
Sbjct: 465 IFGQLIILVVYLPIFALSGVEAKMFHPMALAVVLALVAAIILSITFVPAAVALWVKGDIQ 524

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +      L         + I +            +  I                 +G   
Sbjct: 525 EKESRWMLWLKAKYQQTLDISYQYKAVVLTFALCVLVITGFISTKLGSEFAPQLSEGDFA 584

Query: 581 LG 582
           + 
Sbjct: 585 IQ 586



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 74/230 (32%), Gaps = 35/230 (15%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++  +   +   Q         V +          + V ++  +     +P        
Sbjct: 814  SDVAQVSTIEGINQVSRENGKRRVVVTTNVEGRDLGSFVSDVQTQLKAYTLPSGYWI--- 870

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI-----TKTLGF 710
              G +       K  + ++I    + I+I +             +  ++       T   
Sbjct: 871  EYGGQFENLASAKARMQIVIPLALITIFILL-----------MAVFHNVKESLLVFTGVP 919

Query: 711  FALFG---------IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            FAL G         I  +++A    + L G +V + +V+   +++    Y         +
Sbjct: 920  FALTGGVLFLWLRDIPLSMSAGIGFIALSGVAVLNGLVMLTFIKELRDKY----PVHKAV 975

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
             +     L   + T+  A +  +PMA+    G  V    A  +  GI+ +
Sbjct: 976  WQGAILRLRPVLMTACVASLGFVPMALATGTGAEVQRPLATVVIGGIISS 1025


>gi|145634063|ref|ZP_01789774.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           PittAA]
 gi|145268507|gb|EDK08500.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           PittAA]
          Length = 1026

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 9   RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 50

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 51  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 111 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 168 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 228 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKESD 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 268 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 328 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 388 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 448 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 496



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 84/250 (33%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 764  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGTSSGDAIAWLQQQAND 823

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 824  NLPQ-GYTYDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 878

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF + G   N+ +   ++TL+G      +++ +  ++    Y  
Sbjct: 879  VPLAVSGALVSLNLLSFFGMAGTTLNIYSKVGLITLVGLITKHGILMCEVAKEEQLNYGK 938

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSF--AIPMAFGIVVAAS 810
            +    + I  +    L   + T+ A    ++P +   G   +  F   + +  G+ +   
Sbjct: 939  TR--IEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSMGVVIVAGLSIGTI 996

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 997  FTLFVLPVVY 1006



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 301 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 474

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 475 VALTLSPMMSSKLLKSNAKP 494


>gi|89073334|ref|ZP_01159858.1| AcrB/AcrD/AcrF family protein [Photobacterium sp. SKA34]
 gi|89050821|gb|EAR56295.1| AcrB/AcrD/AcrF family protein [Photobacterium sp. SKA34]
          Length = 1030

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 75/629 (11%), Positives = 171/629 (27%), Gaps = 53/629 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++  +  +L   I  IGL         +  +  FP                     +   
Sbjct: 9   KHPVFASVLSIAIILIGLFS-----FQKLAIQYFPEHSTPKA-------------TVTAS 50

Query: 62  EDDFVNGFLQMYSDE----LRSFLKKEGIGVFSMRQIQNKITLSFADS-RFKENI--ADK 114
            D     F+            + L+   I      Q +  + + F D     E     +K
Sbjct: 51  IDGASADFMSRNVATHLINAATGLESVDIMTTDCTQGKCTLNVKFDDGITDVEYANLMNK 110

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   ++ +         K  +   +  + S       +++    + E    I +Q   Q 
Sbjct: 111 LRSSIEAIIDFPPSMVDKPTVTDDSGDKGSASNIITFVNKGKMSSQEMYDFIGQQIKPQF 170

Query: 175 GISESTIQRLGSHRI-LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
              +      G +      +    +P+R+  L    A +                     
Sbjct: 171 RHIQGVGGVYGPYGGAAKAVRVWLNPNRMMALNVKAADVVTTLSAY-------------- 216

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                +      ++     +                  +   + G     +   D     
Sbjct: 217 -----SSSFTVGQIVGEARNFQINPVTQVTSVKDVQDLVIRVDDGNIIRIKDIADVKMGE 271

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            ++      +                +            A ++          +      
Sbjct: 272 NSLTPSKLKVNGETAMSLQVLPLKSENPVDVAARVKAEIAKMQQHLPDGLEMKMVYNQAD 331

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S      T      LV +++ + +   +   +   +I + +I   A++S LG ++ 
Sbjct: 332 FIQESIDQGFHTLFEAIVLVSVIVVLFLGSLRIASIPIITIPVCIIGVFAVMSFLGFSIN 391

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + +I  I+L IGL VD  I+V E       + ++   +   G +     +    +T    
Sbjct: 392 VLTILAIILAIGLVVDDAIVVVENCYRYIEEGETPLNAAIKGSNEIIFPVIAMTMTLAAV 451

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDI 525
            + +    G      R FA T+  S++IS   A+++   M  ++      + K   +ID 
Sbjct: 452 YLPIGLMSGMTADLFRQFAFTLAASVIISGMVALTLSPMMCAYLIKPVAQQPKWFAAIDK 511

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       ++  F R    G     L ++  + + +   +    +  G I     A
Sbjct: 512 QIHKLSIGYTKQLSKWFDRKALMGGIALALIALSGVAVWYMPQVLLPTEDTGFIDGTSEA 571

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGE 614
              V       +   L       ++    
Sbjct: 572 PTGVGRRYHIKHNSELNTVMEDNKDIAAN 600



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 102/289 (35%), Gaps = 10/289 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       +T+ +   ++ K      ++    V     ++   S  +   + 
Sbjct: 730  TFLGSLKAANLQADDGYTYPIRVQVNRKDLGNFDIIDKLYVASESGQNIPLSEFVSIKAV 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
             +    K ++ +   +   ++        ++  I E VP     +       + +EL+  
Sbjct: 790  TSESSFKTYMGQNSAEITATLMPGYTAGDIRDYINENVPELLDDSQSYAYDGVVKELMDS 849

Query: 669  ---GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                    +++ I + + +  +F+ +   L  + T+ L I   +    +FG   N+ +  
Sbjct: 850  QDGTQTLFLMALIFIYLILAAQFESFVDPLIILLTVPLCIVGAVLTLWVFGQSLNIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +   +  K      +  +    S    L   + TS+   +  L
Sbjct: 910  GLLTLVGLVTKHGILLVEFANEQRK---HGKTAIEAAIHSARSRLRPILMTSLTMILGAL 966

Query: 785  PM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+    G   +   +  + +  G+      S+F+     + +   R K+
Sbjct: 967  PLAFASGPGSLGRVNIGLVLVGGLTAGTFFSLFLVPVAYVGMSKLREKD 1015



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 83/243 (34%), Gaps = 8/243 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-TRVLEMV 638
            + V     + +  +            S    +GE    +++     ++       ++  
Sbjct: 250 VIRVDDGNIIRIKDIADVKMGENSLTPSKLKVNGETAMSLQVLPLKSENPVDVAARVKAE 309

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAI 697
             K+ + +P               +E I +G   +  + + + + +         A   I
Sbjct: 310 IAKMQQHLPDGLEMKMVYNQADFIQESIDQGFHTLFEAIVLVSVIVVLFLGSLRIASIPI 369

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ + I       +  G   N+  + A++  IG  V+D +VV +      +      + 
Sbjct: 370 ITIPVCIIGVFAVMSFLGFSINVLTILAIILAIGLVVDDAIVVVENC---YRYIEEGETP 426

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +   K  NE +   +  +M      LP+ +  G    +   FA  +A  ++++   ++ 
Sbjct: 427 LNAAIKGSNEIIFPVIAMTMTLAAVYLPIGLMSGMTADLFRQFAFTLAASVIISGMVALT 486

Query: 815 IAA 817
           ++ 
Sbjct: 487 LSP 489


>gi|271499772|ref|YP_003332797.1| heavy metal efflux pump, CzcA family [Dickeya dadantii Ech586]
 gi|270343327|gb|ACZ76092.1| heavy metal efflux pump, CzcA family [Dickeya dadantii Ech586]
          Length = 1042

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/543 (11%), Positives = 143/543 (26%), Gaps = 48/543 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   ++I   M+   G++      L ++ LD  P       I           +     
Sbjct: 11  KNRFLVLIATLMMAAWGVIS-----LQKTPLDALPDLSDVQVI---------IRVSYPGK 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +                + + F D         +V  +L  
Sbjct: 57  APQVVENQVTYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFEDGTDPYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L  + K +L    T                     +           ++    +  
Sbjct: 117 VQSTLPAEAKASLGPDATGVGWIYEY-ALVDRSGQHSLADLRAIQDWLLKYELKTVPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     +P RLR L  T  ++       N    G +  +           
Sbjct: 176 EVASIGGMVRQYQVVLNPERLRALNVTHQQVIDALRAANQESGGSVIELGEAEYMVRTSG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +                    +        G     +        P        
Sbjct: 236 YLLKAED-------------------FLNVPVGRRDGIPILLQDVATLRQGPEMRRGIAE 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +   T+         +R         +           + + 
Sbjct: 277 LNGEGEVAGGVIVMRSGKNALETLRAVHARLQQIRQSLPAGVEIVTTYDRSPLIERAITT 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  S+ L ++    ++   G    + S+ GI 
Sbjct: 337 LSHKLLEEFAVVALVCSLFLFHFRSSLVAIISLPLGILGAFIIMRYQGINANIMSLGGIA 396

Query: 422 LGIGLAVDSNILVNERIR-----------EENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + IG  VD+ I++ E +            +    + + +       +     +F S +  
Sbjct: 397 IAIGAMVDAAIVMIENMHKVVEQWRHQHPDTEPDSTTWWQLATQAATEVGPALFCSLLII 456

Query: 471 LIATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++ +S    +++V  +M + +R +         
Sbjct: 457 TLSFIPVFSLQAQEGRLFSPLAFTKTYAMAVSAGLGVTLVPVLMGYFVRGRIPDEQANPL 516

Query: 528 LSR 530
              
Sbjct: 517 NRW 519



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 85/247 (34%), Gaps = 10/247 (4%)

Query: 594  VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
            V S L  +++ +               +         ++ V EM ++   ++     I  
Sbjct: 796  VLSELADIRVSEGPPMLKSENGRLSDWIYVDLRGRDLKSAVEEMQRQVAQQVSLPQGISL 855

Query: 654  TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFA 712
            +     +          + +  + + + I +++ F +   AL  + TL   +   +    
Sbjct: 856  SWSGQFEYLERATETMKLVIPFTLLIIFILLFVTFGQIKDALLIMGTLPFALIGGVWLLY 915

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTTSISFRD---LIDKSIN 766
            L G   ++      + L G +    V++    +   +  +L   ++S       I +   
Sbjct: 916  LLGYNLSVAGAVGFIALAGVAAEFGVIMLLYLNHAVEKHRLPGQTLSNAQLMAAIREGAV 975

Query: 767  ETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              +   + T       +LP+   GG    ++   A PM  G+V A   S+ +   + L +
Sbjct: 976  LRVRPKMMTVATIMAGLLPIMWGGGTGSEIMQRIAAPMIGGMVSAPLLSMLVIPALFLLL 1035

Query: 824  YDWRAKN 830
            +  R + 
Sbjct: 1036 HRNRVEK 1042



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 60/180 (33%), Gaps = 19/180 (10%)

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
            + L    +V ++ S           F +  +L AI +L L I          GI  N+ 
Sbjct: 339 HKLLEEFAVVALVCSL--------FLFHFRSSLVAIISLPLGILGAFIIMRYQGINANIM 390

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSV 773
           ++  +   IG  V+  +V+ + M    +  +               L  ++  E      
Sbjct: 391 SLGGIAIAIGAMVDAAIVMIENMHKVVEQWRHQHPDTEPDSTTWWQLATQAATEVGPALF 450

Query: 774 YTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            + +   +S +P+          F   A    + + V+A   + +   ++ +    R  +
Sbjct: 451 CSLLIITLSFIPVFSLQAQEGRLFSPLAFTKTYAMAVSAGLGVTLVPVLMGYFVRGRIPD 510


>gi|225872777|ref|YP_002754234.1| RND efflux system, permease protein, HAE1/HME family
           [Acidobacterium capsulatum ATCC 51196]
 gi|225791824|gb|ACO31914.1| RND efflux system, permease protein, HAE1/HME family
           [Acidobacterium capsulatum ATCC 51196]
          Length = 1052

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/560 (11%), Positives = 152/560 (27%), Gaps = 40/560 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R       +  +I  IGL +     L +  +D FP+      +       GG       
Sbjct: 8   LRRP-----ITVLIAVIGLALCSILSLMRMPMDIFPNL--NMPVIYVAQPYGGMS----- 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                + G+L  Y +    ++           +    + L+F           +   +++
Sbjct: 56  --PSQMEGYLTYYYESNFLYVAGLQSVESKSVENFALLKLTFIPGTDMNQALAQTVSYIE 113

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + +        ++      + +     +         E     + +           
Sbjct: 114 RARAYMPQGTVPPFVLRFDAGSVPVGYLVFSSK--TRSVDELQDLALNRVRPLFTTLPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D ++L     +T ++    +  N            L     + 
Sbjct: 172 SSPATFGGSSRTIVIHVDRNKLASYRMSTGEVVKALLSGNVIAPAGDVRTGNLDRITPSN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            +V +  ++                     ++          F      +     + L  
Sbjct: 232 AVVSNIEDL--------------------ANLPVRTGAGPTVFMHDIGTVEDGSDITLGY 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            ++          + +A  S    +           +   P      E    G    S +
Sbjct: 272 ALVNGHRTVYLPVTKRADASTLTVVHEVKSSLNRFASVLPPDVQVSYELDQSGKVRKSLA 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 AI A L  +++F+ +   +   +   SI   ++  +  L L   T+ + +++G+
Sbjct: 332 SLLWEGAIGAFLTGLMVFLFLREWRSSFIVVASIPFAMVAAVTCLWLAHQTINIMTLSGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD  ++  E I    +   SV  ++  G  +       + +  L   V  F  
Sbjct: 392 ALAVGILVDEAMVTIENIHRNLQVTDSVPQAVLDGTRQTLVPRMLAMLAILAVFVPSFLM 451

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-IDINPLSRFFLIPD 536
            G         ++ +G +++ S   + + V  + I++ R                     
Sbjct: 452 VGVTQALFVPLSLAVGFAMIASFLLSSTFVPVLYIWLNRKMHRDEAESTGHSRFDHFRDR 511

Query: 537 CIAIQFMRARFWGVGISILF 556
                    R   + I    
Sbjct: 512 YAGWIAQMLRRRTLVIVAYL 531



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 100/337 (29%), Gaps = 25/337 (7%)

Query: 518  KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
              ++ +       +  +   I           V         +         N+  D   
Sbjct: 703  PHLRDLHYGQPLDYPSMNVDIDRVRAGQLGLTVDQVAKSVETATWSSRFVSRNFWQDPVT 762

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF------------------LV 619
            GI   V    P +      +L S+ +      N     +                    V
Sbjct: 763  GIGYQVQVEVPQNQMQTMDDLASIPLVSGGPSNHPNLGDVAHLSYGQVAGELDRYDMQRV 822

Query: 620  RLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI-VGVIISAI 678
                         R    V + I    P        + G  +      K +  G++++ +
Sbjct: 823  VSLTANVQGEDLGRAANQVDEAIRRAGPPPRGVEVHVRGQVVPMRETLKSLGFGLLLAVV 882

Query: 679  AMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            A+ + +   F     AL A++T    +   +    + G   NL +    +  +G SV + 
Sbjct: 883  AIFLMLAANFQSLRLALVAVSTAPAVVCGVVIMLLITGTTLNLQSFMGAIMALGVSVANS 942

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
            +++              ++  D         L   + TS+A    ++PMA+    GG   
Sbjct: 943  ILLVT--FAESHRKGDGVTAADAAIHGGMTRLRPILMTSIAMIAGMVPMALALSEGGHQT 1000

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                  +  G+  +  +++F+   I   + +  +K++
Sbjct: 1001 APLGRAVIGGLAASTLATLFLLPAIFSAVQERASKHS 1037


>gi|54298016|ref|YP_124385.1| chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila str. Paris]
 gi|53751801|emb|CAH13225.1| Chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila str. Paris]
          Length = 1066

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/510 (15%), Positives = 151/510 (29%), Gaps = 49/510 (9%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----VNGFLQMYSDELRSFLK 82
           L Q  +D FP   P               +V++          V   +    +   +   
Sbjct: 31  LKQMPVDVFPEFAPP-------------QVVVQTQAPGMATQDVETLITYPLESAINGTP 77

Query: 83  KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL-LVTTTEK 141
                        + IT+ F D          V   +Q V ++L       + L  T+  
Sbjct: 78  GVASVRSKTSVGLSTITVVFDDKTDIYLNRQLVNERIQQVVNRLPPGISSPVMLPVTSAV 137

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
              +  +  +           S   IR R+  +G        +     + Q   + DP R
Sbjct: 138 GWLLKYALVSHTASPETLRTISDWTIRPRLLALG---GVASVVSLGGEVKQYQVQLDPKR 194

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
           +     T  ++                         GNQ +    V   G     +T   
Sbjct: 195 MLAYGITVEEVRQGLAT-------------------GNQNVPGAFVHQGGTEFVVSTIGR 235

Query: 262 DPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                     +     G                    D        +   +       + 
Sbjct: 236 IKTLDDIKKTLIVVRKGVPVTVNNVATVAFGGEIKRGDASFNAEHAVIGTVSKIYGADTL 295

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
             T++    LA + ++    I+LN    R       +           A +V+ VLF+ +
Sbjct: 296 TTTLKVEQALADIKKSLPAGIELNTEVFRQANFIESAIHNLTKALIEGAVIVIAVLFLFL 355

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
           +  +   +   S+ ++ I+ + +L   G  +   ++ G+ + IG  VD  I+  E +   
Sbjct: 356 MNWRASFITFLSMPVSFIVGILVLHYFGFGINSMTLGGMAIAIGEVVDDGIITVENVVHR 415

Query: 442 NRKNQ------SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITM 492
            R N+           +        S++  + I   +  + +FF  G         AI  
Sbjct: 416 LRLNRLAENPLPAIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGIPERIFSPLAIAY 475

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             S+L S+  +I++V A+   ++  K  KS
Sbjct: 476 IASVLGSLVVSITMVPALCYLLLARKTEKS 505



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/261 (13%), Positives = 83/261 (31%), Gaps = 10/261 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMV 638
            + V    PV ++ V +     +I                  +    D++  T +V + +
Sbjct: 246 LIVVRKGVPVTVNNVATVAFGGEIKRGDASFNAEHAVIGTVSKIYGADTLTTTLKVEQAL 305

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAI 697
                 +     +              I      +I  + I + +       W  +    
Sbjct: 306 ADIKKSLPAGIELNTEVFRQANFIESAIHNLTKALIEGAVIVIAVLFLFLMNWRASFITF 365

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTT 753
            ++ +     +     FG   N   +  +   IG  V+D ++    V  R+R N +L   
Sbjct: 366 LSMPVSFIVGILVLHYFGFGINSMTLGGMAIAIGEVVDDGIITVENVVHRLRLN-RLAEN 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAAS 810
            +   +++  ++ E     VY ++   +  LP+    G     F   AI     ++ +  
Sbjct: 425 PLPAIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGIPERIFSPLAIAYIASVLGSLV 484

Query: 811 SSIFIAAPILLFIYDWRAKNA 831
            SI +   +   +   + + +
Sbjct: 485 VSITMVPALCYLLLARKTEKS 505



 Score = 37.4 bits (84), Expect = 9.8,   Method: Composition-based stats.
 Identities = 30/258 (11%), Positives = 90/258 (34%), Gaps = 10/258 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            + A+   +    +  L ++    +  Q F   +  + R+     +   +     + + + 
Sbjct: 808  IDAHGAANNQETKIPLRAVADIQLEPQPFAINRENVQRVLVIGFNVQGKDLGSVIQEVQH 867

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL--GAITTL 700
                 +S      +          +   V V+  A+A+ I + +  K +       +   
Sbjct: 868  QIKEKISLPGGYFVQYGGQFESQQQASRVIVLFGALAVFIMLVLLHKAFGTFREALLVMF 927

Query: 701  ILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             L +    G  +LF    + ++ A+   +TL G +  + +++     +   L        
Sbjct: 928  NLPLALIGGVVSLFIASGDMSVAAMIGFITLFGIAARNGIILVSHYNQLRSLGRER---E 984

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFI 815
             ++ +   + L   + T+  A ++++P+      G  +    A  +  G++ +   ++ +
Sbjct: 985  QVVIQGTLDRLVPVLMTAATAALALIPLLWGSPAGKELQRPLAQVLLGGLLTSTVLNMLV 1044

Query: 816  AAPILLFIYDWRAKNARI 833
               +      W  K  ++
Sbjct: 1045 VPTVYNAFEIWHEKRRQL 1062


>gi|304412277|ref|ZP_07393885.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS183]
 gi|307306061|ref|ZP_07585806.1| heavy metal efflux pump, CzcA family [Shewanella baltica BA175]
 gi|304349312|gb|EFM13722.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS183]
 gi|306910934|gb|EFN41361.1| heavy metal efflux pump, CzcA family [Shewanella baltica BA175]
          Length = 1049

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/593 (12%), Positives = 168/593 (28%), Gaps = 45/593 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           ++I+  MI   G+       L ++ LD  P       I                     V
Sbjct: 16  VLIIAIMITVWGV-----QELRKTPLDALPDLSDVQVI---------IKTPYPGQAPKLV 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +          +              + + + F D         +V  +L  ++S+L
Sbjct: 62  EEQVTYPLSTAMLAVPGAKTVRGYSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQISSRL 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             + + +L    +                     +           ++       +    
Sbjct: 122 PQNVQPSLGPDASGVGWVYEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVSEVATV 180

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +        +P ++       A +       N+   G +  +         +   +  
Sbjct: 181 GGMEQTYQIVLEPDKMAIYKLDIATIKQAIDKANSEAGGSVIEMAEAEYMVRAKGYRQTL 240

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +   I L   + +    T K V  +       R   E+  +                  
Sbjct: 241 EDFREIPLGITSPSGTGLTLKDVATVRKGPASRRGIAELDGE-----------------G 283

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   I   +   +   TI+        L+AG       I         L S        
Sbjct: 284 EVVGGIVVMRYGENALATIDAVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNLFSKV 343

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI + IG 
Sbjct: 344 VEEMLVVGLVCLLFLLHARSTLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIGA 403

Query: 427 AVDSNILVNERIREENRKN----------QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            VD  I++ E + +               +  +  +          +F S I   ++ V 
Sbjct: 404 VVDGAIVMIENLHKHLEHFKADHDREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFVP 463

Query: 477 LF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   ++  + F +I++V  +M + IR K               
Sbjct: 464 VFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSERSNPISRFLIA 523

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           I        ++     + ++++    +   +   G  +    + G  L +   
Sbjct: 524 IYQPSLKLVLKFPKVTLMLALIALASAWYPMTRMGSEFMPALEEGDLLYMPTA 576



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 82/243 (33%), Gaps = 13/243 (5%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +    +        E   L+   +   +  +    +   K  +   + +    +    G 
Sbjct: 802  ADIEINDGAPMLKSENGRLISWVFIDIEGTSIGEYIATAKTALDAELIVPPRYSYSFAGQ 861

Query: 660  KISRELIR---KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                + +    K ++ + ++ I +L+ +        ++  + +L   +  +     L   
Sbjct: 862  YEYMQRVDAKLKQLIPMALAVIFILLMMTFGSTIQASII-MLSLPFALVGSTWLLYLLDY 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLG 770
              ++     ++ L G +    VV+        + R+    Y +    ++ + +     + 
Sbjct: 921  NISVAVAVGMIALAGVAAEFGVVMLVYLNNAIKHRQEKDNYHSVNDLKEALIEGAVMRIR 980

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                T    F  +LP+      G  V+   A PM  G+V A   S+F+   + L IY  +
Sbjct: 981  PKAMTVATIFFGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLIYSRK 1040

Query: 828  AKN 830
             K 
Sbjct: 1041 LKK 1043



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +  K    L  K +  
Sbjct: 287 GGIVVMRYGENALATIDAVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNMKL----YTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K+++     +      ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEHFKADHDREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+          F   A    F +  AA  SI +   ++ +    +  + R
Sbjct: 463 PVFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSER 513


>gi|301163176|emb|CBW22726.1| putative cation transport related membrane protein [Bacteroides
           fragilis 638R]
          Length = 1037

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/685 (11%), Positives = 181/685 (26%), Gaps = 51/685 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  +V++ +++  I       N      +D FP       +           ++ E   
Sbjct: 11  NNRIVVLIGALLLIIAGTYTAVN----MEVDVFPDLNAPTVV-----------VMTEAKG 55

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 56  MAPEEVERLVTFPVETAVNGATDVRRVRSSSTTGFSIVWVEFNWGTDIYRARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  +  K  L   +     +++     D V     +           ++  +   
Sbjct: 116 VLGDALPSNVGKPTLGPQSSILGELLIIGLTSDSV--SLQDLRTMADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +     DP +++       ++       N +  G +             
Sbjct: 174 AQVTVLGGDIKEYQILLDPGKMKHYGIGLNEVIDVVKDMNQNAAGGVLYEFGNEFIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                   +    +           +   V                   IG     +   
Sbjct: 234 LSTNKVEALRKAVIKNVDEVPITLENIAEVK------------------IGAKAPKMGLA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  I   +       + + T +    L  + +     +K+     R       S  
Sbjct: 276 SERGKAGILLTVTKQPNTSTLDLTGKLDKSLEDLQKVLPKDVKVTTDIFRQSRFINNSID 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +       V+IVL + ++  +  +++  +I L+VI+ +  L  LG T+   S+ GI
Sbjct: 336 NVQKSLYEGGIFVIIVLLLFLMNIRTTVISLITIPLSVIVAILTLKTLGLTINTMSLGGI 395

Query: 421 VLGIGLAVDSNILVNERIREE--------NRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +           + ++V   +          I +S +  + 
Sbjct: 396 AIAIGSLVDDAIVDVENVFKRLRENRQKPKEEQKNVLTVVFEASKEVRMPILNSTLIIVA 455

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDIN 526
           + V LFF     G  +    IT  +S+  S   A+++   +  +++   K          
Sbjct: 456 SFVPLFFLSGMEGRMLAPLGITFVISLFASTVVALTLTPVLCSYLLNKPKNNGEEHDPYL 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +       +     I  +  +  + +            +G   + +   
Sbjct: 516 VRKLKSGYGMALRWTLCHKKVVLGAIGAILIVSLVMMASFGRSFLPPFNEGSFTVSISTL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   +S            R +         T  +E          
Sbjct: 576 PGISLEESDKIGRMAEDILLSVPEVQTVGRKTGRAELDEHALGVNTSEIEAPFILDKRSK 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIV 671
                +  E +       +     +
Sbjct: 636 DEVLTEIREKIKVIPGVNIEIGAPI 660



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 83/208 (39%), Gaps = 11/208 (5%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            + LE ++K + + V ++T    +      S + ++K +         +++ +       
Sbjct: 303 DKSLEDLQKVLPKDVKVTTDIFRQSRFINNSIDNVQKSLY--EGGIFVIIVLLLFLMNIR 360

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN 747
             + ++ T+ L +   +      G+  N  ++  +   IG  V+D +V    V+ R+R+N
Sbjct: 361 TTVISLITIPLSVIVAILTLKTLGLTINTMSLGGIAIAIGSLVDDAIVDVENVFKRLREN 420

Query: 748 MKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +       +   ++ ++  E     + +++    S +P+    G      A P+    V
Sbjct: 421 RQKPKEEQKNVLTVVFEASKEVRMPILNSTLIIVASFVPLFFLSGMEGRMLA-PLGITFV 479

Query: 807 VAASSSIFIA---APILLFIYDWRAKNA 831
           ++  +S  +A    P+L      + KN 
Sbjct: 480 ISLFASTVVALTLTPVLCSYLLNKPKNN 507



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 74/157 (47%), Gaps = 10/157 (6%)

Query: 681  LIYIWIRFKWYFAL-GAITTLILDITKTLGFFALFGIE--FNLTAVAAVLTLIGYSVNDK 737
            +I++ +  ++  A+   +  L L +    G F+++      ++ A+   ++L G +  + 
Sbjct: 875  VIFLLLFKEFKSAIQSLVILLNLPLALIGGVFSIYFTSGILSIPAIIGFISLFGIATRNG 934

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ DR      L  + +S  D I     + L   + T++++ ++++P+A+     G+ I
Sbjct: 935  MLLIDRYN---SLRASGMSVNDSILHGSLDRLNPILMTALSSGLALIPLALGGELPGNEI 991

Query: 795  GS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             S  A  +  G++ +   + FI   I L+I   + K 
Sbjct: 992  QSPMAKVILGGLLSSTILNGFIIPIIYLYISCKQEKK 1028


>gi|229030850|ref|ZP_04186871.1| hypothetical protein bcere0028_29130 [Bacillus cereus AH1271]
 gi|228730448|gb|EEL81407.1| hypothetical protein bcere0028_29130 [Bacillus cereus AH1271]
          Length = 700

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/563 (11%), Positives = 177/563 (31%), Gaps = 65/563 (11%)

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
             E +               +             S++        V    +++ F  V +
Sbjct: 103 VTEASKDKILDSIETIRDAGIQTELSGGNVTFSDSETSGMTEIVGVLVAFVVLAFTFVSF 162

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGAT--LTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              GL    +I    I  L ++         ++      +LG+ + +D  + +  R R++
Sbjct: 163 LVAGLPILTAIIGLAIGMLGIMIGTNYVEIQSVSLSLAAMLGLAVGIDYALFIINRFRQQ 222

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
             +  SV  S+ +    A S +  + +T +I  + L       +    ++   ++L ++ 
Sbjct: 223 LAQGDSVPESVAIATGTAGSAVIFAGLTVIIGLLGLSVTKIPFLTAMGVSAAFTVLAAVL 282

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR---ARFWGVGISILFSI 558
            ++ I+ A++  +         +             +          R   +       +
Sbjct: 283 VSVIILPAILGLVGHKIAPSKQNRFLQKMTGAGKKHVGSNKWGEFVIRRPLIVTIFAIGL 342

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPV----------------------------- 589
            ++  +    +N G+   G  +      R                               
Sbjct: 343 LAVISIPFFHMNLGLPSDGTTKSTETTERRAYDLLTEAYGEGFHASLMVVAKSEEATAET 402

Query: 590 -----DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 ++    NL  ++    +     G+   +        D      +++ ++ K  +
Sbjct: 403 QNAMNTIAKELGNLPDVKSVTPAIPGPSGKIYMISITPKTGPDDTKTKDLVKAIRDKSNQ 462

Query: 645 IVPLSTIQNTEIVGPKISRELIRKG------IVGVIISAIAMLIYIWIRFKWYFALGAIT 698
               + I+        ++ ++++K          +I+    +L+ +  R      L A+ 
Sbjct: 463 TEKKNEIELMVTGTAAMNIDIVQKLSDALPVFAALIVGLAYVLLVLVFR-SLLIPLKAVL 521

Query: 699 TLILDITKTLGFFA----------LFGIEFNLTAVA-----AVLTLIGYSVNDKVVVYDR 743
             +L +  TLG             +FG       +A      +  L G +++ +V +  +
Sbjct: 522 GFLLSLGATLGAVVFFVQDGHFQNIFGFPAAGPILAFLPVILIGILFGLAMDYEVFLVSK 581

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           MR+   +YT +   +  I + + E+    V   +      +   +   ++I S  + + F
Sbjct: 582 MRE---VYTHTGDPKRAIVEGMRESGRVVVAAGLIMMSVFIGFMLAPDTIIKSIGMALTF 638

Query: 804 GIVVAAS-SSIFIAAPILLFIYD 825
           G+   A    + I   +++ + +
Sbjct: 639 GVFFDAFIVRMTIVPAVMILMGN 661



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/242 (13%), Positives = 80/242 (33%), Gaps = 8/242 (3%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V   + + +        +  QN   +K     +      +   T   +       E +  
Sbjct: 61  VLEEIKKDSAVDSVAAPMQLQNLSEDKTIGYAVVTYKVKAEKVTEASKDKILDSIETIRD 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITK- 706
           + IQ     G     +    G+  ++   +A  + +   F  +  A   I T I+ +   
Sbjct: 121 AGIQTELSGGNVTFSDSETSGMTEIVGVLVA-FVVLAFTFVSFLVAGLPILTAIIGLAIG 179

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGY--SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
            LG           +   ++  ++G    ++  + + +R R+ +       S  + +  +
Sbjct: 180 MLGIMIGTNYVEIQSVSLSLAAMLGLAVGIDYALFIINRFRQQLAQ---GDSVPESVAIA 236

Query: 765 INETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                   ++  +   I +L ++V     + +  +  AF ++ A   S+ I   IL  + 
Sbjct: 237 TGTAGSAVIFAGLTVIIGLLGLSVTKIPFLTAMGVSAAFTVLAAVLVSVIILPAILGLVG 296

Query: 825 DW 826
             
Sbjct: 297 HK 298


>gi|116618244|ref|YP_818615.1| hypothetical protein LEUM_1143 [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116097091|gb|ABJ62242.1| Predicted membrane protein [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 704

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 80/576 (13%), Positives = 193/576 (33%), Gaps = 48/576 (8%)

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
             +L+            +   +   + +     A   +  +             +  +  
Sbjct: 114 PAMLNSYSKDGMTATARVIYKQKGENVSEKTVDALEKSIKITRHKSIQTELTSNDVTISG 173

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
               +       AI   ++ I    +++ G   L A   +   ++L L   + L      
Sbjct: 174 MDNGEQAEVVGLAIAFVILAITFASLLVAGIPILSALLGLVTGMMLVLISTNFLSVATFS 233

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            S+ G+ +G+ + +D  + +  R R+E ++N+S   +L    S A +++  +  T ++A 
Sbjct: 234 MSLVGM-MGLAVGIDYALFIISRYRQELQQNKSKKDALSAAMSTAGTSVIFAGATVIVAL 292

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           + +   G   +    IT  L+IL ++ T+++ V AM++ +      K  +        + 
Sbjct: 293 LGMTVLGIDMLSVMGITASLAILTAILTSLTFVPAMLVVLGDRVTGKKPNRLLQFASKMR 352

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGL------------------------N 570
            +    + +      + + ++  +  I   FTH                           
Sbjct: 353 IEGGWGELVTKYKLLLTMLVVVVLGVIATPFTHINLGLPNDSVKSEKLTERRAYDLMTEA 412

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
           YG   +  + + +  +  V +S   + ++ L       Q    + N    +   P     
Sbjct: 413 YGEGSQATLVVLLKTDNMVKVSDSVNEIKDLGNVATVSQAMPSKDNDYQMITVIPKTDAN 472

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG-----VIISAIAMLIYIW 685
             +  ++V K           +        I+ ++    +       +II   A ++   
Sbjct: 473 AVKTKKLVHKIRDLNQKKGLPRLYVTGSTAINIDMSDALMKALPKFAIIIVLFAFILLTV 532

Query: 686 IRFKWYFALGAITTLILDITKTLGFFA----------LFGIE-----FNLTAVAAVLTLI 730
           +       L A+   +L +  TLG             LFGI       N   V  +  + 
Sbjct: 533 VFRSLLIPLVAVLGFVLSLGATLGAIVFIAQDGHFINLFGIPAKGAILNFLPVLVIGIMF 592

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G +++ +V +  R+R+    Y  + + R  +   + ++    V  ++             
Sbjct: 593 GLAMDYEVFLVSRIRE---HYLKTENTRQAVILGMRDSGPAVVAAALIMMAVFSGFIFAS 649

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            +++ S  + +A GI+  A     I  P  + ++  
Sbjct: 650 DAIVKSMGLVLASGILFDAILVRLILVPATIDLFGK 685



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 93/274 (33%), Gaps = 16/274 (5%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
             N G          V+A    D+    S+++ + +  +             R+ Y+   
Sbjct: 79  HSNNGKALTTDKNQQVMAELFQDVQK-NSHVKMVILPAMLNSYSKDGMTATARVIYKQKG 137

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                + ++ ++K I      S           IS      G    ++      + + I 
Sbjct: 138 ENVSEKTVDALEKSIKITRHKSIQTELTSNDVTISGM--DNGEQAEVVGLAIAFVILAIT 195

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT-LIGY-----SVNDKVVVY 741
           F     L A   ++  +   +    L  I  N  +VA     L+G       ++  + + 
Sbjct: 196 FASL--LVAGIPILSALLGLVTGMMLVLISTNFLSVATFSMSLVGMMGLAVGIDYALFII 253

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
            R R+ ++   +    +D +  +++      ++      +++L M V G  ++    I  
Sbjct: 254 SRYRQELQQNKSK---KDALSAAMSTAGTSVIFAGATVIVALLGMTVLGIDMLSVMGITA 310

Query: 802 AFGIVVAASSSIFIAAPILLFIYDW--RAKNARI 833
           +  I+ A  +S+     +L+ + D     K  R+
Sbjct: 311 SLAILTAILTSLTFVPAMLVVLGDRVTGKKPNRL 344


>gi|315926738|gb|EFV06115.1| protein-export membrane protein SecF [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 216

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/202 (33%), Positives = 106/202 (52%), Gaps = 2/202 (0%)

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             FMR RF  + +S +    SI LL+  GL YGIDF GG  + +       ++ +R  LE
Sbjct: 10  YDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGIDFSGGTLVQLKYENAAPITQIREILE 69

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +            G    +       G +   +  +      + +      ++  ++VGP
Sbjct: 70  NQGTFQNLSVTEFGSNEEVTIRFL--GSNDNVSNDIGEHISTLLKDTGKFEVRRADVVGP 127

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           K+  EL  KG++ + +S IA+LIYI +RF+W FAL AI + I D+  TLG  +LF I+ N
Sbjct: 128 KVGDELRNKGLMAIAVSLIAILIYIALRFEWRFALAAIISEIHDVVITLGAISLFKIDVN 187

Query: 720 LTAVAAVLTLIGYSVNDKVVVY 741
           L  +AAVLT++GYS+ND +++ 
Sbjct: 188 LDTLAAVLTVLGYSLNDTIIIL 209


>gi|300933130|ref|ZP_07148386.1| RND superfamily drug exporter [Corynebacterium resistens DSM 45100]
          Length = 846

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/497 (13%), Positives = 150/497 (30%), Gaps = 48/497 (9%)

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLAVD 429
           V ++L ++        +      L+++ ++ +L++L     +   A     +LG+GLA+D
Sbjct: 193 VGVLLLLVFGGVIAACMPLLVGVLSILGSMGVLAILADATQINVFAQSVVTLLGLGLAID 252

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
             + +  R REE  +   V  ++    + A  T+  S     +A   L  F    ++  A
Sbjct: 253 YGLFMVSRFREELAEGNDVPTAVRNTTATAGKTVVFSAAMVAVALSGLLIFPQAFLKSVA 312

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI--------AIQ 541
                ++ ++   +++++ ++   + +     SI     SR  ++               
Sbjct: 313 FGAMSAVGLAALLSVAVLPSIFGLLGKNIDKWSIRRKSQSRTEVVNGFWGKVPAFAMRHS 372

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP------------- 588
                   VG+  L    +   L      Y              +               
Sbjct: 373 KKVTFLLVVGLLALTVPIAGIKLGGINETYLPPSNETRVAQSHFDEQFPQFRTNPIKLVI 432

Query: 589 ----VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 +  V      L+     FQ     K+ +  L     +    +R++  ++  +  
Sbjct: 433 KGDGAAVGQVFQQANQLEGLTAPFQVTQPTKDGVTVLGTGIQNRDDYSRIVHKLED-LKV 491

Query: 645 IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILD 703
                 +  T  +  +    L  K    +I       I + + F        A+   IL 
Sbjct: 492 EGAEVLVAGTPALEVESISALFEKLPWMLIYIVAVSFILMALIFGSLIIPAKAVIMNILG 551

Query: 704 ITKTLGFFALFGIE--------------FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
              TLG   L  ++               +   V  V  + G S + +V +  RM +   
Sbjct: 552 TGATLGVLTLLFVDGVGADLFNYTAGPLMSPILVLIVAIIFGLSTDYEVFLVSRMVE--- 608

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA- 808
                 S    I      T       ++   +           ++   A  M   +++  
Sbjct: 609 ARARGASTDQAIRFGTATTGSIITAAALIMIVVCGAFGFSSIVMMKYIAFGMVIALILDA 668

Query: 809 ASSSIFIAAPILLFIYD 825
               + +   ++  + +
Sbjct: 669 TVIRMLLVPAVMHLLRE 685


>gi|253565368|ref|ZP_04842823.1| CzcA family cation efflux system protein [Bacteroides sp. 3_2_5]
 gi|251945647|gb|EES86054.1| CzcA family cation efflux system protein [Bacteroides sp. 3_2_5]
          Length = 1037

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/685 (11%), Positives = 181/685 (26%), Gaps = 51/685 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  +V++ +++  I       N      +D FP       +           ++ E   
Sbjct: 11  NNRIVVLIGALLLIIAGTYTAVN----MEVDVFPDLNAPTVV-----------VMTEAKG 55

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 56  MAPEEVERLVTFPVETAVNGATDVRRVRSSSTTGFSIVWVEFNWGTDIYRARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  +  K  L   +     +++     D V     +           ++  +   
Sbjct: 116 VLGDALPSNVGKPTLGPQSSILGELLIIGLTSDSV--SLQDLRTMADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +     DP +++       ++       N +  G +             
Sbjct: 174 AQVTVLGGDIKEYQILLDPGKMKHYGIGLNEVIDVVKDMNQNAAGGVLYEFGNEFIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                   +    +           +   V                   IG     +   
Sbjct: 234 LSTNKVEALRKAVIKNVDEVPITLENIAEVK------------------IGAKAPKMGLA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  I   +       + + T +    L  + +     +K+     R       S  
Sbjct: 276 SERGKAGILLTVTKQPNTSTLDLTGKLDKSLEDLQKVLPKDVKVTTDIFRQSRFINNSID 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +       V+IVL + ++  +  +++  +I L+VI+ +  L  LG T+   S+ GI
Sbjct: 336 NVQKSLYEGGIFVIIVLLLFLMNIRTTVISLITIPLSVIVAILTLKTLGLTINTMSLGGI 395

Query: 421 VLGIGLAVDSNILVNERIREE--------NRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +           + ++V   +          I +S +  + 
Sbjct: 396 AIAIGSLVDDAIVDVENVFKRLRENRQKPKEEQKNVLTVVFEASKEVRMPILNSTLIIVA 455

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDIN 526
           + V LFF     G  +    IT  +S+  S   A+++   +  +++   K          
Sbjct: 456 SFVPLFFLSGMEGRMLAPLGITFVISLFASTVVALTLTPVLCSYLLNKPKNNGEEHDPYL 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +       +     I  +  +  + +            +G   + +   
Sbjct: 516 VRKLKSGYGMALRWTLCHKKVVLGAIGAILIVSLVMMASFGRSFLPPFNEGSFTVSISTL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   +S            R +         T  +E          
Sbjct: 576 PGISLEESDKIGRMAEDILLSVPEVQTVGRKTGRAELDEHALGVNTSEIEAPFILDKRSK 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIV 671
                +  E +       +     +
Sbjct: 636 DEVLTEIREKIKVIPGVNIEIGAPI 660



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 83/208 (39%), Gaps = 11/208 (5%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            + LE ++K + + V ++T    +      S + ++K +         +++ +       
Sbjct: 303 DKSLEDLQKVLPKDVKVTTDIFRQSRFINNSIDNVQKSLY--EGGIFVIIVLLLFLMNIR 360

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN 747
             + ++ T+ L +   +      G+  N  ++  +   IG  V+D +V    V+ R+R+N
Sbjct: 361 TTVISLITIPLSVIVAILTLKTLGLTINTMSLGGIAIAIGSLVDDAIVDVENVFKRLREN 420

Query: 748 MKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +       +   ++ ++  E     + +++    S +P+    G      A P+    V
Sbjct: 421 RQKPKEEQKNVLTVVFEASKEVRMPILNSTLIIVASFVPLFFLSGMEGRMLA-PLGITFV 479

Query: 807 VAASSSIFIA---APILLFIYDWRAKNA 831
           ++  +S  +A    P+L      + KN 
Sbjct: 480 ISLFASTVVALTLTPVLCSYLLNKPKNN 507



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 681  LIYIWIRFKWYFAL-GAITTLILDITKTLGFFALFGIE--FNLTAVAAVLTLIGYSVNDK 737
            +I++ +  ++  A    +  L L +    G F+++      ++ A+   ++L G +  + 
Sbjct: 875  VIFLLLFKEFKSATQSLVILLNLPLALIGGVFSIYFTSGILSIPAIIGFISLFGIATRNG 934

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ DR      L  + +S  D I     + L   + T++++ ++++P+A+     G+ I
Sbjct: 935  MLLIDRYN---SLRASGMSVNDSILHGSLDRLNPILMTALSSGLALIPLALGGELPGNEI 991

Query: 795  GS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             S  A  +  G++ +   + FI   + L+I   + K 
Sbjct: 992  QSPMAKVILGGLLSSTILNGFIIPIMYLYISRKQEKK 1028


>gi|167636259|ref|ZP_02394562.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0442]
 gi|170689191|ref|ZP_02880388.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0465]
 gi|254687123|ref|ZP_05150981.1| transporter, AcrB/AcrD/AcrF family protein [Bacillus anthracis str.
           CNEVA-9066]
 gi|254742180|ref|ZP_05199867.1| transporter, AcrB/AcrD/AcrF family protein [Bacillus anthracis str.
           Kruger B]
 gi|167528374|gb|EDR91145.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0442]
 gi|170666834|gb|EDT17600.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0465]
          Length = 1038

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 195/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L        S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNFVSSSSFQNASSIQVEYDFDKNMEKAETEIKDALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       ++     K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASSQGSQTAGAGAQMPQMNPAAMNGIPTVTLSEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.4 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 SEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|126657094|ref|ZP_01728265.1| acriflavin resistance protein D [Cyanothece sp. CCY0110]
 gi|126621637|gb|EAZ92347.1| acriflavin resistance protein D [Cyanothece sp. CCY0110]
          Length = 1060

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/513 (12%), Positives = 140/513 (27%), Gaps = 36/513 (7%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L++++   G+L      L        P                             V  
Sbjct: 16  VLFALLAIFGMLSLFNLPLELQPGGDRPEITITTP--------------YPGASPAEVED 61

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    +E    ++       +     + I++ F  +   E     V   LQ V + L  
Sbjct: 62  LVTRPIEERLEEVQGIQEISSTSSNGTSNISVEFTWNTDIERSLIDVLNKLQQVEA-LPA 120

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQV-ISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
           +  ++ +   +     ++       +            +    + ++   +   Q + S 
Sbjct: 121 EADESNVEVVSGSSSPMMWVILIPKEGYTPDEYHYRDLVDDVVVPRLRQVQGVGQFIISG 180

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
               ++    DP  L     T   +       N   +G    +            + +  
Sbjct: 181 GREREVEVIVDPKALADRNLTIGDVVNTLRSNNRDIRGGPLVLGRREYRVRTLSRINNVQ 240

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           ++ G  L    +            +                     +  V       +  
Sbjct: 241 QLEGFVLRRDESGTVYLGDVAQARMGRAIQDRALVRNNEPAVGIGIMRQVGGNVPEISAG 300

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           I                   A                  +          S S  +    
Sbjct: 301 IR-----------------AALQDLEQRFDREGEGIAFDITYDENDYINASISFVQSNLI 343

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           + A L  ++L + +   +   V   +I   +I    +  LLG TL + S+AG+   +G+ 
Sbjct: 344 MGAILAALILLLFLGSLRTVGVIAIAIPTTLITVFIVFFLLGRTLNVISLAGLAFAVGMV 403

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGA 484
           VD+ I+V E I    ++ ++   +   G       +  S +T +     +       G  
Sbjct: 404 VDNAIVVLENIFTHMQQGKTPMKAAIDGTQEVGGAMLASTLTTVAVFAPIVLVTGEAGQL 463

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
                I +  S+L S+F A+++V  +    +  
Sbjct: 464 FFDIGIALSASVLFSLFAALTLVPMLAGLFLNR 496



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 95/254 (37%), Gaps = 12/254 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + V LS V   +E+     I+  + +      V +  Q        +    + + +   +
Sbjct: 792  QLVQLSDVAEVIETTGPDAINHVDLERSITLTVSVGRQAPLGALVDQTETQILEPLRANL 851

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            P             ++  L + G    +   I  L+ + +   + + L  + T+ + +T 
Sbjct: 852  PPGVRLELGGSADVLAETLFQLGATFFLSLVITYLLLVALYRSFIYPLLIMATVPMGMTG 911

Query: 707  TLGFFALFGI------EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L    L           ++      + L G  VN+ +++ DR    ++L    + +   
Sbjct: 912  ALLSLVLANAIPGVVVPLDMITGLGFVILTGIVVNNAILLVDRA---LQLQEEGVEYDAS 968

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +  ++ + L     ++  + + +LP+A+    G  +     I +  G++++   +  +  
Sbjct: 969  LYYAVGDRLRPIFMSAGTSVLGMLPLAIIPGKGAELYQGLGIALTGGLILSTFLTPTVIP 1028

Query: 818  PILLFIYDWRAKNA 831
             ++  + D++A+  
Sbjct: 1029 ALMGLLQDFKAREN 1042



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/141 (11%), Positives = 47/141 (33%), Gaps = 7/141 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              + AI  +   +      F L G   N+ ++A +   +G  V++ +VV + +      
Sbjct: 362 TVGVIAI-AIPTTLITVFIVFFLLGRTLNVISLAGLAFAVGMVVDNAIVVLENI---FTH 417

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
                +          E  G  + +++       P+ +  G          I ++  ++ 
Sbjct: 418 MQQGKTPMKAAIDGTQEVGGAMLASTLTTVAVFAPIVLVTGEAGQLFFDIGIALSASVLF 477

Query: 808 AASSSIFIAAPILLFIYDWRA 828
           +  +++ +   +     +   
Sbjct: 478 SLFAALTLVPMLAGLFLNRTE 498


>gi|254514059|ref|ZP_05126120.1| multidrug efflux RND transporter [gamma proteobacterium NOR5-3]
 gi|219676302|gb|EED32667.1| multidrug efflux RND transporter [gamma proteobacterium NOR5-3]
          Length = 1015

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/686 (11%), Positives = 193/686 (28%), Gaps = 46/686 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++L ++I   GL       L +  L  FP                    V    
Sbjct: 9   QRPVLSIVLSALILVAGLAS-----LGKITLREFPELERSVI---------SITTVYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               + GF+        +  +       S     + I++         ++  +V   +  
Sbjct: 55  NSRTIQGFVTTPLQVNIAGARGVEYISSSSNAGVSSISVHVRLGENTSDVLTEVIAKVNE 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L  D    ++ T      +++      +     A + +  ++R    ++       
Sbjct: 115 ARDELPDDVLDPVISTA-GSGDAMMYLAFVSE--QMTAYQVTDYLLRSVQPELATIAGVG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +     R  + +    DP R+  L  T   ++      N           ++R +     
Sbjct: 172 KAGIFGR-YLAMRIWLDPVRMAALNVTANDINAAIRRDNVISTAGATEGEWVRVTVDAVT 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  + +  G                    +   +   R+        +           
Sbjct: 231 GMRTEDDFRG--------------------LVVRQDADRQVRLGDVAEVELAAENNQSRS 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
             +         +     +          +   + A        I++  +  A   +   
Sbjct: 271 STSGKDAVFMSITTAPDANPLSVSSAVHDILPSIEANLPADIELIMDWDSSVAIDDALQE 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +V+ V+F+ +   +  L+   +I L++I  + ++  +G +L L ++  +V
Sbjct: 331 VISTLLEAGLIVIFVIFLFLGSLRVVLIPLVAIPLSLIGVVFIMLSMGFSLNLLTLLAMV 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + IGL VD  I+V E +     +      +   G       +    +T       + F G
Sbjct: 391 IAIGLVVDDAIVVVENVHRHIEEGAGPMQAAMDGAREVALPVIAMTLTLAAVYAPIAFIG 450

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDINPLSRFFL 533
              G     FA+T+  ++L+S   A+++   M          + +    +D         
Sbjct: 451 GLTGALFSEFALTLAGAVLVSGVVALTLSPMMASRFLQGHGEQGRFADGLDRFFHRMNGT 510

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
             + +A          +  + +        L +       +  G + +   A    +L  
Sbjct: 511 YQNLLAQCLNHRGAVLMFTAGILLSLPALFLVSQRELAPEEDTGSLYVAGSAPSYANLDY 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V   L+ +          +             G ++   R     ++++   +       
Sbjct: 571 VSLFLDQVVDIWKEIPEINSSWQVAEPDSNFGGLNMTPWRERTRSQQEVQRELQAKLGSV 630

Query: 654 TEIVGPKISRELIRKGIVGVIISAIA 679
             +         +     G+ +S + 
Sbjct: 631 AGMEMFTFGSPALPGSDSGLPVSFVI 656



 Score = 74.3 bits (180), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 79/238 (33%), Gaps = 7/238 (2%)

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
            A+R V L  V     + +           +  F+        + ++ +  +  +   I 
Sbjct: 246 DADRQVRLGDVAEVELAAENNQSRSSTSGKDAVFMSITTAPDANPLSVSSAVHDILPSIE 305

Query: 644 EIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +P       +        + +++ I  ++    I + +           L  +  + L
Sbjct: 306 ANLPADIELIMDWDSSVAIDDALQEVISTLLEAGLIVIFVIFLFLGSLRVVLIPLVAIPL 365

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +   +      G   NL  + A++  IG  V+D +VV + +    +             
Sbjct: 366 SLIGVVFIMLSMGFSLNLLTLLAMVIAIGLVVDDAIVVVENVH---RHIEEGAGPMQAAM 422

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
               E     +  ++       P+A  G   G++   FA+ +A  ++V+   ++ ++ 
Sbjct: 423 DGAREVALPVIAMTLTLAAVYAPIAFIGGLTGALFSEFALTLAGAVLVSGVVALTLSP 480



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 59/156 (37%), Gaps = 7/156 (4%)

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            S + + + +  +F  +   L  +  + L I   +   A+  +  N+     +LTLIG   
Sbjct: 850  SLLLIFLVLAAQFNSFRDPLVVLVAVPLSIFGAMLPIAMGAMTLNIYTQIGLLTLIGLIA 909

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GG 791
               +++ +      +L          + ++    L   + T+ A  + VLP+ +    G 
Sbjct: 910  KHGILIVEFAN---QLVVQGHDRHSAVLQAATLRLRPILMTTFATVLGVLPLVLASGPGA 966

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +      + +  G+++    ++F+     L     R
Sbjct: 967  NARFGIGLTITAGMLIGTLFTLFVLPVFYLPFRQAR 1002


>gi|307610966|emb|CBX00587.1| chemiosmotic efflux system protein A-like protein [Legionella
           pneumophila 130b]
          Length = 1033

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/507 (14%), Positives = 149/507 (29%), Gaps = 49/507 (9%)

Query: 30  SMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----VNGFLQMYSDELRSFLKKEG 85
             +D FP   P               +V++          V   +    +   +      
Sbjct: 1   MPVDVFPEFAPP-------------QVVVQTQAPGMATQDVETLITYPLESAINGTPGVA 47

Query: 86  IGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL-LVTTTEKEIS 144
                     + IT+ F D          V   +Q V ++L       + L  T+     
Sbjct: 48  SVRSKTSVGLSTITVVFDDKTDIYLNRQLVNERIQQVINRLPPGVSSPVMLPVTSAVGWL 107

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           +  +  +           S   IR R+  +G        +     + Q   + DP R+  
Sbjct: 108 LKYALVSHTASPETLRTISDWTIRPRLLALG---GVASVVSLGGEVKQYQVQLDPKRMLA 164

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T  ++                         GNQ +    V   G     +T      
Sbjct: 165 YGITVEEVRQALAT-------------------GNQNVPGAFVHQGGTEFVVSTIGRIKT 205

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
                  +     G                    D        +   +       +   T
Sbjct: 206 LDDIKKTLIVVRKGVPVTVNNVATVAFGGEIKRGDASFNAEHAVIGTVSKIYGADTLTTT 265

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++    LA + ++    I+LN    R       +           A +V+ VLF+ ++  
Sbjct: 266 LKVEQALADIKKSLPTGIELNTEVFRQANFIESAIHNLTKALIEGAVIVIAVLFLFLMNW 325

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +   +   S+ ++ I+ + +L   G  +   ++ G+ + IG  VD  I+  E +    R 
Sbjct: 326 RASFITFLSMPVSFIVGILVLHYFGFGINSMTLGGMAIAIGEVVDDGIITVENVVHRLRL 385

Query: 445 NQ------SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLS 495
           N+           +        S++  + I   +  + +FF  G         AI    S
Sbjct: 386 NRLAENPLPAIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGIPERIFSPLAIAYIAS 445

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKS 522
           +L S+  +I++V A+   ++  K  K+
Sbjct: 446 VLGSLVVSITMVPALCYLLLARKTEKN 472



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 86/263 (32%), Gaps = 13/263 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT-RVLEMV 638
            + V    PV ++ V +     +I                  +    D++  T +V + +
Sbjct: 213 LIVVRKGVPVTVNNVATVAFGGEIKRGDASFNAEHAVIGTVSKIYGADTLTTTLKVEQAL 272

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAI 697
                 +     +              I      +I  + I + +       W  +    
Sbjct: 273 ADIKKSLPTGIELNTEVFRQANFIESAIHNLTKALIEGAVIVIAVLFLFLMNWRASFITF 332

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTT 753
            ++ +     +     FG   N   +  +   IG  V+D ++    V  R+R N +L   
Sbjct: 333 LSMPVSFIVGILVLHYFGFGINSMTLGGMAIAIGEVVDDGIITVENVVHRLRLN-RLAEN 391

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            +   +++  ++ E     VY ++   +  LP+    G     F+ P+A   + +   S+
Sbjct: 392 PLPAIEIVFDAVLEIRSSVVYATIIISLVFLPIFFLSGIPERIFS-PLAIAYIASVLGSL 450

Query: 814 FIAAPIL-----LFIYDWRAKNA 831
            ++  ++     L +     KN 
Sbjct: 451 VVSITMVPALCYLLLARKTEKNQ 473


>gi|296167419|ref|ZP_06849820.1| transmembrane transport protein MmpL11 [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897228|gb|EFG76833.1| transmembrane transport protein MmpL11 [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 1014

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/524 (12%), Positives = 163/524 (31%), Gaps = 70/524 (13%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL---PSIAGIVLGI 424
               ++LIVL  +        +        V++T+ L+ LL +  T+    +    + GI
Sbjct: 182 WNLPVILIVLLAVFGSLAAAAIPLALGVCTVVVTMGLVYLLSSYTTMSVFVTSTVSMFGI 241

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            LAVD ++ +  R REE R  +    ++D   + +   +  S +T + +   ++     A
Sbjct: 242 ALAVDYSLFILMRFREELRSGRDPQEAVDAAMATSGLAVVLSGMTVVASLTGIYVINTPA 301

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIR----YKKMKSIDINPLSRFFLIPDCIAI 540
           ++  A    L++ ++M T+ ++  A +    R              P        +    
Sbjct: 302 LKSMATGAILAVAVAMLTSTTLTPAALATFGRSAAKRSAFLHWSRGPEGGQSRFWNRWIG 361

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV------ 594
             MR  +     + L  +       +  L   +  +      + A        +      
Sbjct: 362 WVMRRPWMSALAASLVLLVMAAPASSMVLGNSLLRQFDSSHEIRAGVGAAAEALGPGALG 421

Query: 595 ---------------------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
                                      R       +     Q  +   + L+        
Sbjct: 422 PIRVLITFPDGGAASPEHSQTIGAVRKRMTQAPNIVTVAPPQFAEDNGSALLSAVLSVDP 481

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP-------KISRELIRKGIVGVIISAIAM 680
              + R      +     VP       ++ GP                 ++ ++     +
Sbjct: 482 EDMRARETVGWMRAQLPKVPDRGTARVDVGGPTALIKDFDDQVSKTEPLVLAIVALIAFV 541

Query: 681 LIYIWIRFKWYFALGAITTLILDITKT---------------LGFFALFGIEFNLTAVAA 725
           ++ + +    + AL  +   +L +                  LGF  +  I+  +  +  
Sbjct: 542 MLLVSV-HSVFLALKGVLMTLLSVAAAYGSLVMVFQWGWLKDLGFAQISSIDSTVPPL-V 599

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +    G S++ ++ +  R+R+    +  S + RD +   +  T  R++ ++    I+V  
Sbjct: 600 LAMTFGLSMDYEIFLLTRIRE---RFLHSGNTRDAVAYGV-STSARTITSAALIMIAVFV 655

Query: 786 MAVW-GGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
              + G  ++    +  A  I V      + +   ++     W 
Sbjct: 656 GFAFAGMPLVAEIGVACAVAIAVDATVVRLVLVPALMAMFAQWN 699



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 57/160 (35%), Gaps = 9/160 (5%)

Query: 677 AIAMLIYIWIRFKWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTL----IG 731
              +LI +   F    A      L +  +  T+G   L    +   +V    T+    I 
Sbjct: 184 LPVILIVLLAVFGSLAAAAIPLALGVCTVVVTMGLVYLLS-SYTTMSVFVTSTVSMFGIA 242

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            +V+  + +  R R+ ++   +    ++ +D ++  +    V + M    S+  + V   
Sbjct: 243 LAVDYSLFILMRFREELR---SGRDPQEAVDAAMATSGLAVVLSGMTVVASLTGIYVINT 299

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             + S A      + VA  +S  +    L       AK +
Sbjct: 300 PALKSMATGAILAVAVAMLTSTTLTPAALATFGRSAAKRS 339


>gi|104781163|ref|YP_607661.1| RND divalent metal cation efflux transporter CzcA [Pseudomonas
           entomophila L48]
 gi|95110150|emb|CAK14857.1| RND divalent metal cation efflux transporter CzcA [Pseudomonas
           entomophila L48]
          Length = 1051

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 60/599 (10%), Positives = 153/599 (25%), Gaps = 60/599 (10%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF- 65
            +++   +  +  +    +   +  +D  P                 +++ ++++     
Sbjct: 13  RLVVMLAVVLMAAVGI--HSYQKLPIDAVPDI---------------TNVQVQINTAAPG 55

Query: 66  -----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                    +    +   + L          R   +++T+ F D          V   LQ
Sbjct: 56  YSPLETEQRITFAIETAMAGLPGLKQTRSLSRSGLSQVTVIFDDGTDIFFARQLVNERLQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRIDQI 174
               +L    +  +   +T      + +          D     A +  +        Q+
Sbjct: 116 VAREQLPEGIEAAMGPISTGLGEIFLWTVEAKEGALKDDGTPYTATDLRVIQDWIIKPQL 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +         Q     DP RL     T   +                      
Sbjct: 176 RNVPGVAEVNSIGGHAKQYLVAPDPKRLAAYKLTLNDLIAAL------------------ 217

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             + N   V               A     + + + +I    +            +G   
Sbjct: 218 --ERNNANVGAGYIERNGEQLLIRAPGQVASAEDIANIVISSVDGAPIRVSHVAQVGLGQ 275

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +        + I        
Sbjct: 276 ELRSGAATENGREVVLGTVFMLIGENSRTVSQAVAAKLEAINRSLPKGVVAITVYDRTNL 335

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ VLF+ +   +  L+    I L+++ T   +     +  L
Sbjct: 336 VEKAIATVKKNLIEGAILVIAVLFLFLGNIRAALITAMVIPLSMLFTFTGMFSNKVSANL 395

Query: 415 PSIAGI-----VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF---SRAYSTIFDS 466
            S+  +     V G  + V++ I      ++ + +  +        F     A   +   
Sbjct: 396 MSLGALDFGIIVDGAVVIVENAIRRLAHAQQHHGRMLTRSERFHEVFAAAREARRPLIYG 455

Query: 467 NITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +  ++  + +F      G      A T+ +++L +M  +++ V A +   +  K  +  
Sbjct: 456 QLIIMVVYLPIFALTGVEGKMFHPMAFTVVMALLGAMILSVTFVPAALALFVTGKVKEEE 515

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +   +        +     R      G + L  +  +              +G   L 
Sbjct: 516 GVVMRTARRRYAPVLDWVLARRNLAFAGAATLVLLSGVLASRMGSEFIPSLSEGDFALQ 574



 Score = 38.1 bits (86), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 53/167 (31%), Gaps = 12/167 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + +          AL  IT +++ ++    F  +F  + +   ++      G 
Sbjct: 348 IEGAILVIAVLFLFLGNIRAAL--ITAMVIPLSMLFTFTGMFSNKVSANLMSLGALDFGI 405

Query: 733 SVNDKVVVYDR-MRKNMKLYTTSISFRDL------IDKSINETLGRSVYTSMAAFISVLP 785
            V+  VV+ +  +R+                    +  +  E     +Y  +   +  LP
Sbjct: 406 IVDGAVVIVENAIRRLAHAQQHHGRMLTRSERFHEVFAAAREARRPLIYGQLIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +    G    +    A  +   ++ A   S+      L      + K
Sbjct: 466 IFALTGVEGKMFHPMAFTVVMALLGAMILSVTFVPAALALFVTGKVK 512


>gi|87306900|ref|ZP_01089046.1| heavy metal efflux pump CzcA [Blastopirellula marina DSM 3645]
 gi|87290273|gb|EAQ82161.1| heavy metal efflux pump CzcA [Blastopirellula marina DSM 3645]
          Length = 1067

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/685 (10%), Positives = 182/685 (26%), Gaps = 57/685 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN   +++   ++   G+       L Q  +D FP   P              +     
Sbjct: 10  LRNRALVILATIVLAVAGVFA-----LQQLDIDAFPDTTPVQVQ---------INTTAPA 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    ++  S L    +     +   +++ ++F D          +   + 
Sbjct: 56  LSSEEVEKQITFPVEQSISGLPGLTVMRSISKFGLSQVVVTFEDGVDIYFARQLINERIG 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEIS----------IVLSQNNIDQVISHAIEQSMEIIRQR 170
            V  +L    ++  +   +               +  SQ +  + ++   E         
Sbjct: 116 SV--QLPAGIERPQMGPVSTGLGEVFHYVLTYEGVDFSQVSDAERVARLTELRTLHDWVV 173

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
             Q+       +         Q     DP ++ +   T  ++S                 
Sbjct: 174 KPQLRSVPGVAEVNSWGGYEKQYQIRLDPDQVIKHGLTFEEVSDAVRA------------ 221

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                   N   V       G  +          +   + DI                 +
Sbjct: 222 --------NNENVGGGAITDGSEMLLVHGVGRTVSVDQIQDIVIKAKDGAPIRVSDVAEV 273

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEE 349
                +                         +  +  A       +R+            
Sbjct: 274 KIGHEIRRGTVTADGQGEAVLGLGFMLMGENSHQVTWALKDKLEQVRSTLPAGVTIKTVY 333

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                        +        LV+ VLF+ +   + G +   +I L+++   + +   G
Sbjct: 334 DRTELVDHVIHTVQKNLFEGGLLVVAVLFIFLGNLRAGFIVALAIPLSMLFAFSGMLQFG 393

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK---NQSVFCSLDMGFSRAYSTIFDS 466
              +L S+  I    GL VDS++++ E            +S    +              
Sbjct: 394 IAASLLSLGAI--DFGLVVDSSVVMIENCVRHLSHDTQGRSRLEIIRDAAVEVRKPTMYG 451

Query: 467 NITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +  +I  + +       G   R  A+T+ +++  SM  +++++  +  F++     ++ 
Sbjct: 452 ELIIMIVYLPILTLEGVEGKLFRPMAMTVIMALAGSMVLSLTLMPVLASFLLPRNLTETE 511

Query: 524 DINPLSRFFLIPDCIAIQFM-RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +       L    +      +    G  + I  ++  +              +G I L 
Sbjct: 512 PLLIRWLKRLYVPILRYTMHNKFVVIGAALCIFVAVFGLIAPNLGSEFVPRLSEGAITLN 571

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V+     DL        +     +  +  D   +   R+      +      L  +   +
Sbjct: 572 VVRLAGTDLEESIR-YNTRMEKVLLEKFPDEIAHAWSRVGTAEVATDPMGTELTDLFITL 630

Query: 643 TEIVPLSTIQNTEIVGPKISRELIR 667
                    ++ + +   I  EL  
Sbjct: 631 RPREQWKRAESQDELTVLIQEELRD 655



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 77/203 (37%), Gaps = 8/203 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP-KISRELIRKGIVGV 673
                + ++         + V    +    ++         E  G  +  +   ++ ++ V
Sbjct: 818  YQRRITIESNVRGRDMGSFVAAARQAVAEQVALPPGRYRVEWGGQFENLQRAQQRLMIVV 877

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             I+ + +   +++ ++ W  +L   T +       +    +  + F+++A    + L G 
Sbjct: 878  PIALLMIFALLYMTYRNWIDSLRVFTGVPFAWIGGVVALWIRDMPFSISAAVGFIALSGV 937

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            +V D +++   +R   +L     +  + ++++    L   + T++ A +  +PMA     
Sbjct: 938  AVLDDMLLVSTIR---QLRRRGRNLDEAVEEAAMTRLRPILMTTLVASLGFVPMAFSTGM 994

Query: 790  GGSVIGSFAIPMAFGIVVAASSS 812
            G  V    A  +  G+  A   S
Sbjct: 995  GAEVQRPLATVVIGGVCSAMVMS 1017



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/156 (14%), Positives = 53/156 (33%), Gaps = 5/156 (3%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              + + +                 + L +         FGI  +L ++ A+    G  V
Sbjct: 353 GGLLVVAVLFIFLGNLRAGFIVALAIPLSMLFAFSGMLQFGIAASLLSLGAI--DFGLVV 410

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS-- 792
           +  VV+ +   +++   T   S  ++I  +  E    ++Y  +   I  LP+    G   
Sbjct: 411 DSSVVMIENCVRHLSHDTQGRSRLEIIRDAAVEVRKPTMYGELIIMIVYLPILTLEGVEG 470

Query: 793 -VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    A+ +   +  +   S+ +   +  F+    
Sbjct: 471 KLFRPMAMTVIMALAGSMVLSLTLMPVLASFLLPRN 506



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 56/511 (10%), Positives = 134/511 (26%), Gaps = 36/511 (7%)

Query: 4    NPWLVI---LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISL-GLDLRGGSHLVLE 59
            N ++VI   L   +   GL+   PN   + +      A+  N + L G DL     +   
Sbjct: 532  NKFVVIGAALCIFVAVFGLIA--PNLGSEFVPRLSEGAITLNVVRLAGTDLEE--SIRYN 587

Query: 60   VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI--ADKVTL 117
               +  +            S +    +    M      + ++       +     D++T+
Sbjct: 588  TRMEKVLLEKFPDEIAHAWSRVGTAEVATDPMGTELTDLFITLRPREQWKRAESQDELTV 647

Query: 118  FLQGVNSKLNVD--PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
             +Q     L          +     + IS V S           ++       +    + 
Sbjct: 648  LIQEELRDLPGPRLAMSQPIEMRMNEMISGVRSDVAAILYGDD-LDVMASKAAEIEQVLK 706

Query: 176  ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
              +          +           +++Q       +    ++      G          
Sbjct: 707  TIDGAADVK----VEQVTGQPVLQIKIKQDQIARYGVPASNIMNLVRSLGSHHVGEVYEG 762

Query: 236  SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  ++     +                      +     G R               
Sbjct: 763  QLRFPLIIRLPERVRAD------------PAAIADILVATSTGQRIPLSRLASIERVEEP 810

Query: 296  VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +        +  ++   G+   S       A      L  G   ++     E      
Sbjct: 811  NTIKREWYQRRITIESNVRGRDMGSFVAAARQAVAEQVALPPGRYRVEWGGQFEN----L 866

Query: 356  LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
              +         I   ++  +L+M        L     +    I  +  L +     ++ 
Sbjct: 867  QRAQQRLMIVVPIALLMIFALLYMTYRNWIDSLRVFTGVPFAWIGGVVALWIRDMPFSIS 926

Query: 416  SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            +  G +   G+AV  ++L+   IR+  R+ +++  +++         I  + + A +  V
Sbjct: 927  AAVGFIALSGVAVLDDMLLVSTIRQLRRRGRNLDEAVEEAAMTRLRPILMTTLVASLGFV 986

Query: 476  VLFF---FGGGAVRGFAITMGLSILISMFTA 503
             + F    G    R  A  +   +  +M  +
Sbjct: 987  PMAFSTGMGAEVQRPLATVVIGGVCSAMVMS 1017


>gi|265763647|ref|ZP_06092215.1| CzcA family cation efflux system protein [Bacteroides sp. 2_1_16]
 gi|263256255|gb|EEZ27601.1| CzcA family cation efflux system protein [Bacteroides sp. 2_1_16]
          Length = 1037

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/685 (11%), Positives = 181/685 (26%), Gaps = 51/685 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  +V++ +++  I       N      +D FP       +           ++ E   
Sbjct: 11  NNRIVVLIGALLLIIAGTYTAVN----MEVDVFPDLNAPTVV-----------VMTEAKG 55

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 56  MAPEEVERLVTFPVETAVNGATDVRRVRSSSTTGFSIVWVEFNWGTDIYRARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  +  K  L   +     +++     D V     +           ++  +   
Sbjct: 116 VLGDALPSNVGKPTLGPQSSILGELLIIGLTSDSV--SLQDLRTMADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +     DP +++       ++       N +  G +             
Sbjct: 174 AQVTVLGGDIKEYQILLDPGKMKHYGIGLNEVIDVVKDMNQNAAGGVLYEFGNEFIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                   +    +           +   V                   IG     +   
Sbjct: 234 LSTNKVEALRKAVIKNVDEVPITLENIAEVK------------------IGAKAPKMGLA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  I   +       + + T +    L  + +     +K+     R       S  
Sbjct: 276 SERGKAGILLTVTKQPNTSTLDLTGKLDKSLEDLQKVLPKDVKVTTDIFRQSRFINNSID 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +       V+IVL + ++  +  +++  +I L+VI+ +  L  LG T+   S+ GI
Sbjct: 336 NVQKSLYEGGIFVIIVLLLFLMNIRTTVISLITIPLSVIVAILTLKTLGLTINTMSLGGI 395

Query: 421 VLGIGLAVDSNILVNERIREE--------NRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +           + ++V   +          I +S +  + 
Sbjct: 396 AIAIGSLVDDAIVDVENVFKRLRENRQKPKEEQKNVLTVVFEASKEVRMPILNSTLIIVA 455

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDIN 526
           + V LFF     G  +    IT  +S+  S   A+++   +  +++   K          
Sbjct: 456 SFVPLFFLSGMEGRMLAPLGITFVISLFASTVVALTLTPVLCSYLLNKPKNNGEEHDPYL 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +       +     I  +  +  + +            +G   + +   
Sbjct: 516 VRKLKSGYGMALRWTLCHKKVVLGAIGAILIVSLVMMASFGRSFLPPFNEGSFTVSISTL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   +S            R +         T  +E          
Sbjct: 576 PGISLEESDKIGRMAEDILLSVPEVQTVGRKTGRAELDEHALGVNTSEIEAPFILDKRSK 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIV 671
                +  E +       +     +
Sbjct: 636 DEVLTEIREKIKVIPGVNIEIGAPI 660



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 83/208 (39%), Gaps = 11/208 (5%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            + LE ++K + + V ++T    +      S + ++K +         +++ +       
Sbjct: 303 DKSLEDLQKVLPKDVKVTTDIFRQSRFINNSIDNVQKSLY--EGGIFVIIVLLLFLMNIR 360

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN 747
             + ++ T+ L +   +      G+  N  ++  +   IG  V+D +V    V+ R+R+N
Sbjct: 361 TTVISLITIPLSVIVAILTLKTLGLTINTMSLGGIAIAIGSLVDDAIVDVENVFKRLREN 420

Query: 748 MKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +       +   ++ ++  E     + +++    S +P+    G      A P+    V
Sbjct: 421 RQKPKEEQKNVLTVVFEASKEVRMPILNSTLIIVASFVPLFFLSGMEGRMLA-PLGITFV 479

Query: 807 VAASSSIFIA---APILLFIYDWRAKNA 831
           ++  +S  +A    P+L      + KN 
Sbjct: 480 ISLFASTVVALTLTPVLCSYLLNKPKNN 507



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 681  LIYIWIRFKWYFAL-GAITTLILDITKTLGFFALFGIE--FNLTAVAAVLTLIGYSVNDK 737
            +I++ +  ++  A    +  L L +    G F+++      ++ A+   ++L G +  + 
Sbjct: 875  VIFLLLFKEFKSATQSLVILLNLPLALIGGVFSIYFTSGILSIPAIIGFISLFGIATRNG 934

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ DR      L  + +S  D I     + L   + T++++ ++++P+A+     G+ I
Sbjct: 935  MLLIDRYN---SLRASGMSVNDSILHGSLDRLNPILMTALSSGLALIPLALGGELPGNEI 991

Query: 795  GS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             S  A  +  G++ +   + FI   I L+I   + K 
Sbjct: 992  QSPMAKVILGGLLSSTILNGFIIPIIYLYISRKQEKK 1028


>gi|289578221|ref|YP_003476848.1| protein-export membrane protein SecD [Thermoanaerobacter italicus
           Ab9]
 gi|289527934|gb|ADD02286.1| protein-export membrane protein SecD [Thermoanaerobacter italicus
           Ab9]
          Length = 411

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 121/383 (31%), Positives = 217/383 (56%), Gaps = 29/383 (7%)

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
           + + +     V    I +++ +IR R+D +G+++  I + GS+RI ++LPG  DP R  +
Sbjct: 51  VYVLEEAEGNVTQDEINKAIAVIRNRVDALGVTQPVIAQQGSNRIRVELPGMNDPDRAIE 110

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
           ++G TA++ F                             + +V ++G ++  + A +   
Sbjct: 111 IIGKTAQLKF--------------------------IGPDGQVILTGANVKDSKAVYAQT 144

Query: 265 T---HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISG 321
                +P V +  D  G ++F E T+  + +P+A+VLD +V++AP +N  I +G A I+G
Sbjct: 145 ETGVQQPEVTLVLDAEGTKKFAEATQKFLNQPIAIVLDDKVISAPRVNDVITTGNAVITG 204

Query: 322 NFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIV 381
               + A  LA ++RAGSLP+ L  +   +VGA LG  +        + G++LI+LFM  
Sbjct: 205 LKDFQEASELATLIRAGSLPVTLKPIAYSSVGATLGPSAYNAAVKVGIYGVLLILLFMAA 264

Query: 382 LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREE 441
            Y   G++AD ++ + +++ L + +L   TL LP IAG +L IG+AVD+N+L+ ER +EE
Sbjct: 265 FYRLPGIMADVALIIYILINLIIYALFNITLDLPGIAGFLLSIGMAVDANVLIFERFKEE 324

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
            R  +S+  +LD GF RA++ +FD+N+T +I  ++LF+ G G V+GFA+T+ + ++ S F
Sbjct: 325 LRAGKSLRAALDAGFRRAFTAVFDANMTTIIGAIILFYMGSGNVKGFALTLLIGVISSFF 384

Query: 502 TAISIVRAMMIFIIRYKKMKSID 524
           TAI++ R ++  ++     + I 
Sbjct: 385 TAITVTRFLLHALLEMDLTRDIK 407



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 32/172 (18%), Positives = 72/172 (41%), Gaps = 4/172 (2%)

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              VG  +        +   I   + +L+++   ++    + A   LI+ I   L  +AL
Sbjct: 232 YSSVGATLGPSAYNAAVKVGIYGVLLILLFMAAFYRLP-GIMADVALIIYILINLIIYAL 290

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F I  +L  +A  L  IG +V+  V++++R ++ ++      S R  +D           
Sbjct: 291 FNITLDLPGIAGFLLSIGMAVDANVLIFERFKEELRA---GKSLRAALDAGFRRAFTAVF 347

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +M   I  + +   G   +  FA+ +  G++ +  ++I +   +L  + +
Sbjct: 348 DANMTTIIGAIILFYMGSGNVKGFALTLLIGVISSFFTAITVTRFLLHALLE 399



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/161 (13%), Positives = 53/161 (32%), Gaps = 6/161 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR+   +     ++    +            +  +  +  +NRI LGLDLRGG +++ E 
Sbjct: 1   MRSKGAIKFFSVIVIAAIVAYVA---FFGIKVGNYSISSIQNRIRLGLDLRGGVYVLEEA 57

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLFL 119
           +  +     +      +R+ +   G+    + +Q  N+I +        +   + +    
Sbjct: 58  EG-NVTQDEINKAIAVIRNRVDALGVTQPVIAQQGSNRIRVELPGMNDPDRAIEIIGKTA 116

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI 160
           Q                   + +     ++  + Q     +
Sbjct: 117 QLKF-IGPDGQVILTGANVKDSKAVYAQTETGVQQPEVTLV 156


>gi|239816528|ref|YP_002945438.1| heavy metal efflux pump, CzcA family [Variovorax paradoxus S110]
 gi|239803105|gb|ACS20172.1| heavy metal efflux pump, CzcA family [Variovorax paradoxus S110]
          Length = 1062

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/674 (10%), Positives = 171/674 (25%), Gaps = 60/674 (8%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  +G+         +  +D  P                 +++ ++++          
Sbjct: 16  VLLAVLGMATLGVFSYQKLPIDAVPDI---------------TNVQVQINTAAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
               +    + + + L          R   +++T+ F D          V   +Q     
Sbjct: 61  AEQRVTYPIETVMAGLPGLQQTRSLSRYGLSQVTVIFEDGTDIYFARQLVNERIQSARGS 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRIDQIGISES 179
           +       +   +T      + +          D     + +           Q+   + 
Sbjct: 121 MPSGISPVIGPISTGLGEIYLWTVEAEEGAKKADGKPYTSTDLREIQDWIIKPQLRNVKG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         +     DP++L     + A +       N +        R  +     
Sbjct: 181 VTEINSIGGHAKEFQIAPDPAKLLAHGLSMADLVSALERNNANVGAGYIEKRGEQYLIRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+   +I  + L                  S                +G    +   
Sbjct: 241 PGQVKSVEDIGNVIL----------------ASSSASAAGMPLRVRDVAEVGIGQELRTG 284

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +        +          +           + 
Sbjct: 285 AATDNGREVVLGTVFMLIGENSRTVSQEVDKKMQQINRTLPAGVKAVTVYDRTVLVDKAI 344

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+ VLF+ +   +  L+    I L+++ T   +     +  L S+  
Sbjct: 345 ATVKKNLFEGAVLVIAVLFLFLGNMRAALITALVIPLSMLFTFTGMVNQKVSANLMSLGA 404

Query: 420 IVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIFDSNIT 469
           +  GI   +D  +++ E                      F  +      A   +    + 
Sbjct: 405 LDFGII--IDGAVVIVENCVRRLAHAQARHGRALTRSERFHEVFAASQEARRPLLFGQLI 462

Query: 470 ALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++  + +F      G      A T+ +++L +M  +I+ + A +   I +K  +    N
Sbjct: 463 IMVVYLPIFALAGVEGKLFHPMAFTVVIALLGAMILSITFIPAAVALFIGHKVSEK--EN 520

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            L ++        +    A    V  + + ++    LL T      +   G     + A 
Sbjct: 521 RLMQWARCGYEPLLARAMAARPLVITTAVVAVLLSGLLATRLGTEFVPSLGEGDFAIQAL 580

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           R    S+ +S     QI       F   +    R       S      +      +    
Sbjct: 581 RIPGTSLTQSVEMQKQIERTLKAKFPEIERVFARTGTAEIASDPMPPNISDGYIMLKPED 640

Query: 647 PLSTIQNTEIVGPK 660
                Q T      
Sbjct: 641 QWPVFQGTSRRTRD 654



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 68/205 (33%), Gaps = 6/205 (2%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              Q    +    + +          + V E  +      +P             ++    
Sbjct: 831  PNQVSREDGKRRIVVSANVRGRDLGSFVAEAEEAMRKVRIPPGYWTAWGGQYENLASAAE 890

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
            R  +V  +   +   +   +       L   T +   +T  +    L GI  +++A    
Sbjct: 891  RLQVVVPVSLLLVFTLLFAMFGNLKDGLLVFTGIPFALTGGIVALWLRGIPLSISAAVGF 950

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            + L G +V + +V+   +R   KL    +     I +     L   + T++ A +  +PM
Sbjct: 951  IALSGVAVLNGLVMISFIR---KLREGGLPLDAAIREGALTRLRPVLMTALVASLGFVPM 1007

Query: 787  AVW---GGSVIGSFAIPMAFGIVVA 808
            A+    G  V    A  +  GI+ +
Sbjct: 1008 AIATGTGAEVQRPLATVVIGGILSS 1032



 Score = 42.4 bits (97), Expect = 0.32,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 77/255 (30%), Gaps = 19/255 (7%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++  + IG         +    V L          +R +     K  + +  +     +
Sbjct: 270 RDVAEVGIGQELRTGAATDNGREVVLGTVFMLIGENSRTVSQEVDKKMQQINRTLPAGVK 329

Query: 656 IVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
            V       L+ K I  V       + + + +          AL     + L +  T   
Sbjct: 330 AVTVYDRTVLVDKAIATVKKNLFEGAVLVIAVLFLFLGNMRAALITALVIPLSMLFTFTG 389

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTTSISFRDL-----IDK 763
                +  NL ++ A+    G  ++  VV+ +    R          +         +  
Sbjct: 390 MVNQKVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQARHGRALTRSERFHEVFA 447

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPI 819
           +  E     ++  +   +  LP+    G    +    A  +   ++ A   SI FI A +
Sbjct: 448 ASQEARRPLLFGQLIIMVVYLPIFALAGVEGKLFHPMAFTVVIALLGAMILSITFIPAAV 507

Query: 820 LLFIYDW-RAKNARI 833
            LFI      K  R+
Sbjct: 508 ALFIGHKVSEKENRL 522


>gi|91791357|ref|YP_552307.1| acriflavin resistance protein [Polaromonas sp. JS666]
 gi|91701238|gb|ABE47409.1| acriflavin resistance protein [Polaromonas sp. JS666]
          Length = 1093

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/599 (11%), Positives = 170/599 (28%), Gaps = 31/599 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            +   ++       +GLL         +  +  P  +                + L    
Sbjct: 18  TSKLTILFMLACILLGLLAV-----TLTPREENPQIVVPGAQ---------VWVTLPGAS 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    + +   +        +       + + F     KE    K+   + G 
Sbjct: 64  AEEVEELVIRPLEGIVKQIAGVDHTYATAVNSMGVLMVQFKVGEDKEKSLVKLYDRVLGQ 123

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L     + L+ +    ++ IV      +    +A+++   +  + ++ +   +    
Sbjct: 124 RERLPAGAGEPLIRSVDVDDVPIVTVTLASEIYDDYALKR---LADRLMEGLRSLDKVSA 180

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    +L  E DP RL+    T  ++       N +        +           
Sbjct: 181 ISVKGGRDRELRIELDPQRLQAFGVTLDQVHATLRASNVAAPLGTVVQQGQNRQVFLDGF 240

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++  + +               V     +              G+          
Sbjct: 241 LSSAQDLKRLIVGSHAGRPIYLGDVAQVIDGPPQERTHLSRLAFGPADGRFGKTQQAEM- 299

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      + KA  +  F           ++A  +P  + +V  RN G    +    
Sbjct: 300 ----PAVTLAVAKKAGSNAVFVANDVLERIERMKAQFVPTGVELVVTRNDGQKADAAVSG 355

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                 +A L + ++    L  K  L+   ++ L + LTL    L G ++   S+  ++L
Sbjct: 356 LIEHLGIAVLAVFLVTAAFLGLKEALIVGVTVPLILALTLGAAYLFGLSINRVSLFALIL 415

Query: 423 GIGLAVDSNILVNERIREENRK--NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            +GL VD  I+V E I     +   Q          +   +    + +  ++    L   
Sbjct: 416 SLGLLVDGAIVVIENIHRNYSRLGKQDKRLVTVQATNEIGNPTNLATLAVMLVFGSLLVV 475

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS----RFFL 533
               G      A  + +++  S+  A ++V       ++  +   ++ +       RF+ 
Sbjct: 476 SGMPGQYFYPVAFNVPVAMAASLLVAYAVVPWAANRWLKLGEGHDLEDHDTKDRLHRFYR 535

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                 +   R+R+    ++ L    S+       +            GV         
Sbjct: 536 HLMSPLVDRSRSRWLAFLLAGLAIAVSLLQPAWQFVRPAGLGGPQSWFGVELAMMPKDD 594



 Score = 77.8 bits (189), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 88/230 (38%), Gaps = 2/230 (0%)

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
           +      + Q         V  +           VLE +++   + VP            
Sbjct: 287 ADGRFGKTQQAEMPAVTLAVAKKAGSNAVFVANDVLERIERMKAQFVPTGVELVVTRNDG 346

Query: 660 KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFN 719
           + +   +   I  + I+ +A+ +          AL    T+ L +  TLG   LFG+  N
Sbjct: 347 QKADAAVSGLIEHLGIAVLAVFLVTAAFLGLKEALIVGVTVPLILALTLGAAYLFGLSIN 406

Query: 720 LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
             ++ A++  +G  V+  +VV + + +N          R +  ++ NE    +   ++A 
Sbjct: 407 RVSLFALILSLGLLVDGAIVVIENIHRNYSRLGK-QDKRLVTVQATNEIGNPTNLATLAV 465

Query: 780 FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            +    + V  G     F  P+AF + VA ++S+ +A  ++ +  +   K
Sbjct: 466 MLVFGSLLVVSGMPGQYF-YPVAFNVPVAMAASLLVAYAVVPWAANRWLK 514



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 59/147 (40%), Gaps = 12/147 (8%)

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            R  +  + ++   + + +   +  +   L A+  + L +        L G  F  T++  
Sbjct: 925  RDMLGALGLALTFIFLVLVAYYQSFSLPLVAMAAIPLGLAGIFPGHWLMGQPFTATSMIG 984

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L G  V + +++ D +    +     +  R+ I ++    L   + T++A  +    
Sbjct: 985  IIALAGVVVRNSLLIIDFVLDYRRQ---GMDLREAILEAGAVRLRPILLTALAIMLGSAV 1041

Query: 786  MA---VWGGSVIGSFAIPMAFGIVVAA 809
            M    V+GG      AI + FG + + 
Sbjct: 1042 MLSDPVFGG-----LAISLIFGTLAST 1063


>gi|309973607|gb|ADO96808.1| Multidrug efflux system protein AcrB [Haemophilus influenzae R2846]
          Length = 1032

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 15  RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 56

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 57  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 116

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 117 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 174 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 234 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKEND 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 274 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 334 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 394 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGAREIAVPVISMTIALIAVYSPM 453

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 454 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 502



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 86/250 (34%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 770  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGTSSGDAIAWLQQQAND 829

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 830  NLPQ-GYTYDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 884

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF++ G   N+ +   ++TL+G      +++ +  ++    Y  
Sbjct: 885  VPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLNYGK 944

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVVAAS 810
            +    + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ +   
Sbjct: 945  TR--IEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLSIGTI 1002

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 1003 FTLFVLPVVY 1012



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 307 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 364 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 420

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 421 GETPFRAAIIGAREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 480

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 481 VALTLSPMMSSKLLKSNAKP 500


>gi|149374337|ref|ZP_01892111.1| cation efflux system protein [Marinobacter algicola DG893]
 gi|149361040|gb|EDM49490.1| cation efflux system protein [Marinobacter algicola DG893]
          Length = 1035

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/671 (11%), Positives = 178/671 (26%), Gaps = 43/671 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNR----ISLGLDLRGGSHLVLEVDEDDF 65
           L +++  I +++A      +  +D FP A P        S GL                 
Sbjct: 14  LMTLVFAIAVIVAGVFSFQKLPVDAFPDATPTMVQVFTTSPGL-------------SPVD 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +   +    +     + K      +     +++T+ F D          V   L     +
Sbjct: 61  IETLISYPVEISMYGIPKLEKVQSTSIFGLSRVTIYFEDGTDIYFARRLVNERLSEAKRQ 120

Query: 126 LNVDPKKN-LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +     +  L    +     ++ S    D+      E           Q+         L
Sbjct: 121 IPEGMGEPELGPIASGLGRILMYSLEAEDKDQYSLQEIRTIQDWIVKPQLRTVPGVTGVL 180

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                + Q     D  +L+    T + +       N +               G +Y+V 
Sbjct: 181 SIGGEVKQYQVNIDAQKLQARNLTVSDVRGALTQNNRNVGASFI------TRGGEEYIVR 234

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
                      G   +           I     G    +      +G   A+     V +
Sbjct: 235 G---------YGWVNSGTAGIKDIRNIIVSKSEGESPIYVKDVAEVGLGPAIRRGAEVSS 285

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                          + +  +E        L                      +    + 
Sbjct: 286 GEESVGGYVMKLIGTNTSKVLEDVNAKIDDLNKSLPEGLKIEAYYSQADLVGKAIGTVEK 345

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
                + LVL+ L++ +   +  L+   ++ L+V+     + + G +  L S+ G+ +GI
Sbjct: 346 ALLEGSVLVLVFLYLFLGNIRSTLIVVATLPLSVLFAFIAMRMSGLSANLMSLGGLAIGI 405

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF-------DSNITALIATVVL 477
           G+ VD  +++ E I     +      S+      +   +           I   +    L
Sbjct: 406 GMMVDGAVVMIENIFRHLEERSDEKISVLRLVGESAREVARPIVFAIGIIIIVFLPLFTL 465

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G      A T+  +++ ++  A+++V  +     +           L    L    
Sbjct: 466 QGVEGKLFSPMAYTISFALIGALLLALTLVPVLASLSFKMGGRHKEPKLVLFLNRLYKPV 525

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +       +       I F+   +   +          +G  Q+         L      
Sbjct: 526 VNTVVKAPKIVMGVAVIAFAGSLLLFPYLGSEFVPTLREGTFQIRSTLPPGASLESAIKY 585

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            + +Q     F    G    + R +            +      +  +       + E +
Sbjct: 586 GKRIQSVVDEFPEVTGTYARIGRAEVGGDPEPVN---VVATLVNLKPLDQWREDVSYEDL 642

Query: 658 GPKISRELIRK 668
             +I+  L  +
Sbjct: 643 QSRIADALDER 653



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 80/238 (33%), Gaps = 9/238 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  +++     +      +    +Q           V ++ K+   ++          
Sbjct: 798  SRVADVEMYAGPKKISRSNASRRQYVQMNVRGRDMGGVVQDLRKRIEEQVDMPPGYFVEF 857

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +     + +  + V I+   + + ++  F        I   +     T G  ALF 
Sbjct: 858  GGQFENQERAMARLAIVVPITLALIFLLLFSAFSSLRYAALIFMNV-PFAITGGIVALFV 916

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+  ++ A    + + G +V + VV+   +    +L        + +       L   +
Sbjct: 917  TGLYLSVPAAVGFIAVFGVAVLNGVVMVSYIN---QLRDEGYEVIEAVKLGAQRRLRPVL 973

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             T+  A + ++P+ +    G +V    A  +  G++ +   ++ +   +  +    R 
Sbjct: 974  MTASVAILGLIPLLLADGIGSNVQRPLATVVVGGLITSTLLTLVVLPSVYQWFASERR 1031



 Score = 38.9 bits (88), Expect = 3.4,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 43/110 (39%), Gaps = 1/110 (0%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  + TL L +        + G+  NL ++  +   IG  V+  VV+ + + ++++
Sbjct: 365 IRSTLIVVATLPLSVLFAFIAMRMSGLSANLMSLGGLAIGIGMMVDGAVVMIENIFRHLE 424

Query: 750 LY-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
                 IS   L+ +S  E     V+      I  LP+    G     F+
Sbjct: 425 ERSDEKISVLRLVGESAREVARPIVFAIGIIIIVFLPLFTLQGVEGKLFS 474


>gi|229844049|ref|ZP_04464190.1| acriflavine resistance protein [Haemophilus influenzae 6P18H1]
 gi|229813043|gb|EEP48731.1| acriflavine resistance protein [Haemophilus influenzae 6P18H1]
          Length = 1026

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 9   RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 50

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 51  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 111 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 168 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 228 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKESD 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 268 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 328 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 388 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 448 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 496



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 77/194 (39%), Gaps = 15/194 (7%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKG-IVGVIISA--IAMLIYIWIRFK-WYFALG 695
              + +    +  Q         +R+L+++G  + V  +   I + + + I+F+     + 
Sbjct: 815  AWLQQHANDNLPQGYTYDFKSEARQLVQEGNALAVTFALAVIIIFLVLAIQFESIRDPMV 874

Query: 696  AITTLILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + ++ L +         L FF++ G   N+ +   ++TL+G      +++ +  ++   
Sbjct: 875  IMISVPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEE-- 932

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIV 806
                  +  + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ 
Sbjct: 933  QLNHGKTRIEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLS 992

Query: 807  VAASSSIFIAAPIL 820
            +    ++F+   + 
Sbjct: 993  IGTIFTLFVLPVVY 1006



 Score = 47.0 bits (109), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 301 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 474

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 475 VALTLSPMMSSKLLKSNAKP 494


>gi|118592550|ref|ZP_01549941.1| Putative silver efflux pump [Stappia aggregata IAM 12614]
 gi|118434897|gb|EAV41547.1| Putative silver efflux pump [Stappia aggregata IAM 12614]
          Length = 1060

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/660 (10%), Positives = 174/660 (26%), Gaps = 36/660 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  +     + +A    + ++ +D  P       I                     V   
Sbjct: 14  VIILAVAAMIAVAGIWAVRETPVDAIPDLSDVQVI---------VRTPYPGQAPQVVEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  + + L  D
Sbjct: 65  VTFPIATAMLAVPGASDVRGFSFFGDSYVYIVFEDGTDLYWARTRVLEYLGQIAANLPDD 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               L    T                     +           ++   +   +      +
Sbjct: 125 VSPQLGPDATGVGWIYQY-ALIDRTGNHDLAQLRALQDWFLKYELQTVDGVSEVATIGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     DP++LR    T +++       N    G +  +        +   V++  ++
Sbjct: 184 VKQYQVVVDPNKLRAYDITLSQIRGAIQAANRETGGSVIEMGEAEFMVRSTGYVDELADL 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                                 +  ++ GA        D    P      G         
Sbjct: 244 ------------------AKAPLMVNDRGAPLTLGDVADIRLGPEMRRGVGEFGGEGDAV 285

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +   +   +    I+        LR+        +      G    +    +      
Sbjct: 286 GGVVILRWGGNALAAIKAVEARIGELRSSLPEGVEIVTTYDRSGVIERAIENLQTKLTEE 345

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V++V    +L+ +  LV  FS+ L +     ++ L G    + S+ GI + IG  VD
Sbjct: 346 FIVVVLVCAAFLLHLRSSLVILFSLPLGIAAAFIIMKLQGVNANIMSLGGIAIAIGAMVD 405

Query: 430 SNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           + I++ E +       +    + +  +    S     +F S     ++ + +F      G
Sbjct: 406 AAIVMIEAMHRRLEHEKLTAENRWRIVGECASEVGPALFFSLAIITVSFLPVFVLESQEG 465

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
              +  A T   ++  +   +I++V  +M + +R + +             +        
Sbjct: 466 RLFKPLAFTKTYAMAAAAILSITLVPVLMGYFVRGRILAENKNPLNRIVIWLYRPFLDAA 525

Query: 543 MRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
           +   +    ++ +        L            +G           V +   R  L+  
Sbjct: 526 IAWPWATTILAGVLVASMWWPLQRIGTEFMPALNEGDFLYMPTLYPGVSIGKAREVLQQS 585

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
                +          L R +     +        +  K  +E     T++       ++
Sbjct: 586 DRLIATVPEVKTVHGKLGRAETATDPAPLTMIETTIQLKPRSEWREGMTMERIRDELDQV 645



 Score = 46.6 bits (108), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 4/156 (2%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + +L+          +L  + +L L I        L G+  N+ ++  +   IG  V+
Sbjct: 346 FIVVVLVCAAFLLHLRSSLVILFSLPLGIAAAFIIMKLQGVNANIMSLGGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS-- 792
             +V+ + M + ++    +   R  ++ +  +E      ++     +S LP+ V      
Sbjct: 406 AAIVMIEAMHRRLEHEKLTAENRWRIVGECASEVGPALFFSLAIITVSFLPVFVLESQEG 465

Query: 793 -VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    A    + +  AA  SI +   ++ +    R
Sbjct: 466 RLFKPLAFTKTYAMAAAAILSITLVPVLMGYFVRGR 501


>gi|315503895|ref|YP_004082782.1| mmpl domain-containing protein [Micromonospora sp. L5]
 gi|315410514|gb|ADU08631.1| MmpL domain-containing protein [Micromonospora sp. L5]
          Length = 726

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/578 (12%), Positives = 174/578 (30%), Gaps = 61/578 (10%)

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
            P    A+   +     +   +        + A +      I     V          + 
Sbjct: 118 TPDGRYALIQVQFAGGADEVTDEQRDAYEKVGAQAEAQGWQIAPGGEVLNGEPEVGSTEA 177

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
              +VA +VL++ F  ++     ++         +  L  LS      +   I  ++LG+
Sbjct: 178 IGVLVAAIVLVITFGSLVAAGMTMLNALIGVGVGMAGLFALSGAVELTSTAPILALMLGL 237

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            + +D ++ +  R R+      S   ++      A S +  +  T ++A   L   G   
Sbjct: 238 AVGIDYSLFITSRHRQNLLDGLSPEEAVGRAVGTAGSAVVFAGATVVVALAGLAVVGIPF 297

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           +    +    ++ +++  AI++  A++ F       + +                  F  
Sbjct: 298 LTVMGLAAAGTVTVAVLVAITLAPALLGFAGHKVLPRKLRDRKAVEDPTTGSEDRSGFGF 357

Query: 545 ARFWGVGISILFS-------------------------------ICSICLLFTHGLNYGI 573
                V    +                                   +          +G 
Sbjct: 358 RWARWVTRLRIPVILVGLLGLGLLAIPAQDMRLALPDASAAAEGTPARVSSDLIREGFGP 417

Query: 574 DFKGGIQLGVLANRPVDLSVVR-------SNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            F G + + V A+ P                 + +        +  G    +  +     
Sbjct: 418 GFTGRLAVVVTADSPQATQAAIPQVTALVQKTDGVLAVAPPQVDPSGRTALIGVIPKTGP 477

Query: 627 DSVAQTRVLEMVKKKITEI-VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA-MLIYI 684
              A   V+  ++K+++ I      +     VG  +S +L     V +++     +L+ +
Sbjct: 478 TEEATETVVHDIRKQVSGIQNADVLLTGVTAVGIDVSEKLSDALPVYLLLVVGLSILLLM 537

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFA----------LFGIE-----FNLTAVAAVLTL 729
            +       + A    +L +  T G             L G++      +   +  +  L
Sbjct: 538 LVFRSILVPVKAALGFLLTVAATFGITVAVFQQGHLADLVGLDTPAPLVSFLPILLIGIL 597

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            G +++ +V +  RMR+    +    + +      +     R V  +    ISV    V+
Sbjct: 598 FGLAMDYEVFLVSRMRE---DFVHGDTAQQATINGMGH-GARVVTAAALIMISVFGGFVF 653

Query: 790 -GGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYD 825
               +I S    +A G+ + A    + I   ++  + +
Sbjct: 654 LEDPIIKSMGFALAIGVAIDAFVVRMTIVPAVMSLLNN 691



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 60/162 (37%), Gaps = 5/162 (3%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE--FNLTAVAAVLTL 729
            + +   A+++ I         +  +  LI       G FAL G     +   + A++  
Sbjct: 177 AIGVLVAAIVLVITFGSLVAAGMTMLNALIGVGVGMAGLFALSGAVELTSTAPILALMLG 236

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +   ++  + +  R R+N+      +S  + + +++       V+      +++  +AV 
Sbjct: 237 LAVGIDYSLFITSRHRQNLLD---GLSPEEAVGRAVGTAGSAVVFAGATVVVALAGLAVV 293

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           G   +    +  A  + VA   +I +A  +L F         
Sbjct: 294 GIPFLTVMGLAAAGTVTVAVLVAITLAPALLGFAGHKVLPRK 335


>gi|255326448|ref|ZP_05367530.1| mmpl domain protein [Rothia mucilaginosa ATCC 25296]
 gi|255296488|gb|EET75823.1| mmpl domain protein [Rothia mucilaginosa ATCC 25296]
          Length = 937

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 98/916 (10%), Positives = 247/916 (26%), Gaps = 132/916 (14%)

Query: 3   NNPWLVILYSMICCIGLL-------------IALPNFLPQSMLDRFPSAMPKNRISLGLD 49
              W VIL  ++   G+                +P    Q + D      P         
Sbjct: 14  RRAWAVILTWVLIIAGVAGAYTAFHGKLSNTFTMPGTQTQQLSDELAQRFPSAN------ 67

Query: 50  LRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE 109
            RG   ++L   +   +    +       S L  E   V ++       +         +
Sbjct: 68  -RGSGQIILTTGDGTALTEEQKQAFSAALSALPSEVPSVDAVTDPFTTTSKLTEAKTQLD 126

Query: 110 NIADKV----------TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA 159
               K+             L    S+L    K+         +    +S     + ++ A
Sbjct: 127 EAHAKIDAAPSQIEDGKKQLNAAASQLEDGMKQIADNEKKLDDSQAQIS--AGQEQLASA 184

Query: 160 IEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLP 219
            +Q  +   Q  D    +E+                   P+ + + L         +   
Sbjct: 185 QKQLDDAQEQLKDGYAQAEAAGS----------------PAAMMEQLNAQQAQLTEQQNA 228

Query: 220 NNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
            N ++  +   +   D+   +   +      G        N   KT   +          
Sbjct: 229 LNQQRNTLTESQKQVDAGRAEIASKKDELAEGKKKLDEQRNQLQKTENDLPAQREQLERQ 288

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
           ++ ++ T               V        A  S K +I    + E   +++ +  A  
Sbjct: 289 QKLYDFTAG----------YRMVSEDQSTAIATVSFKKKIYEVPSAELQKVMSDIESANL 338

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVI 399
               +      +  A  G     +    ++A +VL+++   ++     ++      +  +
Sbjct: 339 HGATVQFDANLSESALGGGSHTGEVAGMVIAFIVLMIMLGTLVAAGLPILMSLVGVVVGV 398

Query: 400 LTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA 459
           L    LS +    +     G++LG+ + +D ++ +  R R           ++ +    +
Sbjct: 399 LGTLSLSSVVQMSSTAYTLGLMLGLAVGIDYSLFILNRYRTNLLDGMPKVQAIALANGTS 458

Query: 460 YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            + +  +  T +IA V L   G   +          ++++   A+++  A++        
Sbjct: 459 GNAVIFAASTVIIALVALNVTGIPFLGVMGNAAAFCVVVAALIAVTLTPAVLSLAGTKIM 518

Query: 520 MKSIDINPLSRFF----------LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
            K +  +  +                       +      + +                +
Sbjct: 519 SKKLWASIDTPKKIAERRAQDAERTEKPNGWLRLVLARPLLTLVAGTLALLAVAAPMSQM 578

Query: 570 NYGIDFKGGIQ---------------------------------LGVLANRPVDLSVVRS 596
             G+                                        +     +   + +  +
Sbjct: 579 RLGLPDASNYPSDSAAYKSYALVKDKFGEGMSAPLVAVAHTPANMSEEQAQQAQIDIASA 638

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ---- 652
             E       +        +  + +        A +   E +  ++  +           
Sbjct: 639 VKERGGANVQAVVPGGMTDDRTLMIFQVIPAHSASSVETEELVHELRAVTVPVQGSEVSL 698

Query: 653 ---NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTL 708
                      +S  L +K  + + +      + + + F+     L A    +  +  + 
Sbjct: 699 GIAGQTSGNIDVSEVLAQKLPLYLGVVMGLSFLVLILVFRSIMVPLVASVGFLFSVLASF 758

Query: 709 GFF----------ALFGIE-------FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
           G            +LFG++       F  T +  +L   G +++ ++ +   MR+    Y
Sbjct: 759 GAVVSIYQLGFMSSLFGVDHPGPVLSFLPTLLIGIL--FGLAMDYQMFLVTGMRE---AY 813

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS- 810
                    I    N  +   V  ++              ++I      +AFG++V A  
Sbjct: 814 VHGKDAATAIVSGYNHAVRVVVAAAIIMISVFGGFIFADSTMIRPMGFGLAFGVLVDAFI 873

Query: 811 SSIFIAAPILLFIYDW 826
             + +   I+  + D 
Sbjct: 874 VRMTLTPAIMALLGDK 889


>gi|150004579|ref|YP_001299323.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides
           vulgatus ATCC 8482]
 gi|149933003|gb|ABR39701.1| AcrB/AcrD/AcrF family cation efflux system protein [Bacteroides
           vulgatus ATCC 8482]
          Length = 1027

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/617 (11%), Positives = 176/617 (28%), Gaps = 34/617 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATHVRRVRSSSTNGFSVVWVEFEWDTDIYLARQIVSEKLSLV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + +L  +  K  +   +     +++     D      ++           ++  +    Q
Sbjct: 118 SEELPENVGKPTMGPQSSILGELLIIGLTSDTTSM--LDLRTLADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +     DP+R++    T A++       N +  G +               
Sbjct: 176 VAVLGGDIKEYQVLLDPARMKHYNVTLAEVMNVTRNMNQNANGGVIYEYGNEYIVRGVLS 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D  ++S   +               V                   IG     +     
Sbjct: 236 SHDVAQLSRSVIKTVEGVPVTLEDIADVK------------------IGSQEPKLGTASE 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +   +       +   T +    L  + +     + ++    R       S    
Sbjct: 278 RGKPAVLLTVTKQPKTGTIELTEQLEAALKDLQKNLPADVHVSTDIFRQSRFIESSIGNV 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K +    A  V+IVLF+ +   +  +++  ++ L++I+++  L  +G T+   S+ G+ +
Sbjct: 338 KDSLYEGAVFVVIVLFLFLANVRTTVISLVTLPLSLIVSILTLHYMGLTINTMSLGGMAI 397

Query: 423 GIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +  R+N+        SV   +          I +S +  +++ 
Sbjct: 398 AIGSLVDDAIVDVENVWKHLRENRLLPEGERKSVIEVVFNASKEVRMPILNSTLIIVVSF 457

Query: 475 VVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LFF  G   R      I   +++  S   A+++   +  +++   K K +        
Sbjct: 458 VPLFFLTGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGNNKSKGLPKEAFVAV 517

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANRP 588
           ++                  +     + ++ L+    L         +G   + + +   
Sbjct: 518 WMKKHYRNALLWSLNHKSAVLGFTGGLFAVALVMFFTLGRSFLPSFNEGSFTINISSLPG 577

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L+         +   +S            R +            +E   +        
Sbjct: 578 ISLAESDKMGHRAEELLMSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSRQE 637

Query: 649 STIQNTEIVGPKISREL 665
                   +       +
Sbjct: 638 LVADVRAKLSTITGANI 654



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/303 (9%), Positives = 84/303 (27%), Gaps = 13/303 (4%)

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
               R      +              G+    D     +  +     V +++       +
Sbjct: 206 MNVTRNMNQNANGGVIYEYGNEYIVRGVLSSHDVAQLSRSVIKTVEGVPVTLEDIADVKI 265

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              +             V L            + E ++  + ++                
Sbjct: 266 GSQEPKLGTASERGKPAVLLTVTKQPKTGTIELTEQLEAALKDLQKNLPADVHVSTDIFR 325

Query: 662 SRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   I  V       +   +++           + ++ TL L +  ++      G+
Sbjct: 326 QSRFIESSIGNVKDSLYEGAVFVVIVLFLFLANVRTTVISLVTLPLSLIVSILTLHYMGL 385

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRM----RKNMKL-YTTSISFRDLIDKSINETLGR 771
             N  ++  +   IG  V+D +V  + +    R+N  L      S  +++  +  E    
Sbjct: 386 TINTMSLGGMAIAIGSLVDDAIVDVENVWKHLRENRLLPEGERKSVIEVVFNASKEVRMP 445

Query: 772 SVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            + +++   +S +P+    G    ++    I     +  +   ++ +   +  ++     
Sbjct: 446 ILNSTLIIVVSFVPLFFLTGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGNNK 505

Query: 829 KNA 831
              
Sbjct: 506 SKG 508



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 98/259 (37%), Gaps = 21/259 (8%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + ++ +   + ++    IS +N   +         +   SV       +  
Sbjct: 781  MIDTGDGQKIPVNYIADVVSAMGPNTISRENVKRKIVISANTSGRDLRSVVNDIQERIDA 840

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +                     SR L+    + +++    + + ++ +FK   A   +  
Sbjct: 841  QIKLPEGYHVEYGGQFESEQAASRTLMLTSFMSIVV----IFLLLYTQFK-NAAQSGVIL 895

Query: 700  LILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTS 754
            L L +    G FAL     E ++ A+   ++L G +  + +++       R+        
Sbjct: 896  LNLPLALIGGVFALMITTGEISIPAIIGFISLFGIATRNGMLLISHYNMLREE------G 949

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAAS 810
            +  ++ I     + L   + T++++ ++++P+A      G+ I S  A  +  G++ +  
Sbjct: 950  MDLKESILHGSLDRLNPILMTALSSALALIPLAFRGDLPGNEIQSPMAKVILGGLLTSTF 1009

Query: 811  SSIFIAAPILLFIYDWRAK 829
             + FI  PI+  + + + K
Sbjct: 1010 LNAFII-PIVYELMNRKKK 1027


>gi|153002671|ref|YP_001368352.1| CzcA family heavy metal efflux protein [Shewanella baltica OS185]
 gi|151367289|gb|ABS10289.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS185]
          Length = 1049

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/593 (12%), Positives = 168/593 (28%), Gaps = 45/593 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           ++I+  MI   G+       L ++ LD  P       I                     V
Sbjct: 16  VLIIAIMITVWGV-----QELRKTPLDALPDLSDVQVI---------IKTPYPGQAPKLV 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +          +              + + + F D         +V  +L  ++S+L
Sbjct: 62  EEQVTYPLSTAMLAVPGAKTVRGYSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQISSRL 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             + + +L    +                     +           ++       +    
Sbjct: 122 PQNVQPSLGPDASGVGWVYEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVSEVATV 180

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +        +P ++       A +       N+   G +  +         +   +  
Sbjct: 181 GGMEQTYQIVLEPDKMAIYKLDIATIKQAIDKANSEAGGSVIEMAEAEYMVRAKGYRQTL 240

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +   I L   + +    T K V  +       R   E+  +                  
Sbjct: 241 EDFREIPLGITSPSGTGLTLKDVATVRKGPASRRGIAELDGE-----------------G 283

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   I   +   +   TI+        L+AG       I         L S        
Sbjct: 284 EVVGGIVVMRYGENALATIDAVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNLFSKV 343

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI + IG 
Sbjct: 344 VEEMLVVGLVCLLFLLHARSTLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIGA 403

Query: 427 AVDSNILVNERIREENRKN----------QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            VD  I++ E + +               +  +  +          +F S I   ++ V 
Sbjct: 404 VVDGAIVMIENLHKHLEHFKADHDREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFVP 463

Query: 477 LF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   ++  + F +I++V  +M + IR K               
Sbjct: 464 VFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSERSNPISRFLIA 523

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           I        ++     + ++++    +   +   G  +    + G  L +   
Sbjct: 524 IYQPSLKLVLKFPKVTLMLALIALASAWYPMTRMGSEFMPALEEGDLLYMPTA 576



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 82/243 (33%), Gaps = 13/243 (5%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +    +        E   L+   +   +  +    +   K  +   + +    +    G 
Sbjct: 802  ADIEINDGAPMLKSENGRLISWVFIDIEGTSIGEYIATAKTALDAELVVPPRYSYSFAGQ 861

Query: 660  KISRELIR---KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                + +    K ++ + ++ I +L+ +        ++  + +L   +  +     L   
Sbjct: 862  YEYMQRVDAKLKQVIPMALAVIFILLMMTFGSTIQASII-MLSLPFALVGSTWLLYLLDY 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLG 770
              ++     ++ L G +    VV+        + R+    Y +    ++ + +     + 
Sbjct: 921  NISVAVAVGMIALAGVAAEFGVVMLVYLNNAIKHRQEKDNYHSVNDLKEALIEGAVMRIR 980

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                T    F  +LP+      G  V+   A PM  G+V A   S+F+   + L IY  +
Sbjct: 981  PKAMTVATIFFGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLIYSRK 1040

Query: 828  AKN 830
             K 
Sbjct: 1041 LKK 1043



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +  K    L  K +  
Sbjct: 287 GGIVVMRYGENALATIDAVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNMKL----YTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K+++     +      ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEHFKADHDREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+          F   A    F +  AA  SI +   ++ +    +  + R
Sbjct: 463 PVFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSER 513


>gi|116327401|ref|YP_797121.1| cation/multidrug efflux pump [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116120145|gb|ABJ78188.1| Cation/multidrug efflux pump [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
          Length = 1034

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/641 (10%), Positives = 165/641 (25%), Gaps = 47/641 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  ++ +    I   G++  L         D FP+   K  +                 
Sbjct: 10  KNRLFMYLGMIFILVSGIISLL-----GLRRDAFPNVDMKQMV---------ISTKFPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSR-FKENIADKVTLFLQ 120
               V   +    +E    +          R   + I +         E + +++   + 
Sbjct: 56  SPADVELRITYPIEEKLKEIDGIDEIRSFSRNSVSDIDVRVNLEEKDPEKVLNEIRRAVD 115

Query: 121 GVNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
              S+      +   +         I+       +        +  I R    +I   + 
Sbjct: 116 NAMSEFPAQVTEKPKMTERKSGSFPILEFSIFGGKDEIELHSTAEFIER----EIEKIQG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +     +   +     + ++L+Q       +       N +            D    
Sbjct: 172 VARVDVFGKRDREWHILVNANKLKQYSLDLNDIINIIRNRNINIPAGSVDSETAFD---- 227

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                  + I G               +     +                +         
Sbjct: 228 -------LRIDGE---------FKNPSEIGKIPARTNEIFSTVKLGDIARVEDTFEYPRF 271

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             +             K +       +        L           +            
Sbjct: 272 LAIANGKQGLILSVIKKERADAIEVADNVHSKMQELSKTYPSGMKTFILNDEAKRTKNRL 331

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S+      I   +V  +LF+ + +     +   S+  ++++T A+L L   +  + S+ G
Sbjct: 332 SVVSSNALIGFTIVFGILFLFLDFRTAT-LTSLSLPFSMLMTFAVLPLFDVSFNMISMMG 390

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +++ +G+ VD++I+++E I     +    F +   G       IF S +T + A + + F
Sbjct: 391 LIISLGMLVDNSIVISENIYTYLSEKNDTFTASLRGTVEMVVPIFGSYLTTVTAFLPMLF 450

Query: 480 FGGGAVRGFA---ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G   +      + + +++  S+  +   + A ++   +      I      +   I  
Sbjct: 451 MTGIMGKFIWEIPLVVIVALTASLIESFLFLPARIVAFAKTPDQMKIKSRFRLKMDSIFH 510

Query: 537 CIAIQFMRARFWGVG---ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
            I   F +   + +     S    +  +                   + ++  +      
Sbjct: 511 SIETNFSKFVSFNIQHKKSSFAIILLLVFGSCGAMSQMDFILFPKEDIEIIMIKAEFSPT 570

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            R      +   +        K  LV    + G        
Sbjct: 571 SRIFQTREKTKYMENIVQKIPKEELVSYSTKIGVQQTDPDD 611



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 81/252 (32%), Gaps = 8/252 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   +S +        +    F         +   +    D+  +         +  
Sbjct: 785  NITNLAKISKMNLIESPELLAHKDFDRAITVNGDVKLDEITAHDANQRVANEFKPLIERQ 844

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                  T    E    +    L + G++ +      + + I     ++  +  ++T+ L 
Sbjct: 845  YPGISLTFGGEEKDTQRSMTSLAKAGLIAIFGIFGILALTI---KSFWKPILILSTIPLG 901

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            I   +  F L G   +  A+  ++ L G  VN  +V+ D +  +     +  S  +++ +
Sbjct: 902  IIGIVIGFPLSGKSISFLAMIGIIGLAGVLVNASIVLVDCI--DSIRKDSKASMDEILIE 959

Query: 764  SINETLGRSVYTSMAAFISVLP-MAVWGG--SVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +        + T++     +LP     GG   ++    + + +G+      S+F     L
Sbjct: 960  ASQRRFRPILLTTLTTVAGLLPTAYSLGGSDPILIPMTLALGWGLGFGTLGSLFYVPVTL 1019

Query: 821  LFIYDWRAKNAR 832
                D   K  +
Sbjct: 1020 SVFNDLMIKFGK 1031



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/251 (9%), Positives = 71/251 (28%), Gaps = 9/251 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +    N       +          +             + L     +      V + V  
Sbjct: 243 IPARTNEIFSTVKLGDIARVEDTFEYPRFLAIANGKQGLILSVIKKERADAIEVADNVHS 302

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIWIRFKWYFALGAI 697
           K+ E+           +    ++    +  V     +I    +   +++   +  A    
Sbjct: 303 KMQELSKTYPSGMKTFILNDEAKRTKNRLSVVSSNALIGFTIVFGILFLFLDFRTATLTS 362

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            +L   +  T     LF + FN+ ++  ++  +G  V++ +V+ + +   +         
Sbjct: 363 LSLPFSMLMTFAVLPLFDVSFNMISMMGLIISLGMLVDNSIVISENIYTYLSEKN---DT 419

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIF 814
                +   E +     + +    + LPM    G +   I    + +   +  +   S  
Sbjct: 420 FTASLRGTVEMVVPIFGSYLTTVTAFLPMLFMTGIMGKFIWEIPLVVIVALTASLIESFL 479

Query: 815 IAAPILLFIYD 825
                ++    
Sbjct: 480 FLPARIVAFAK 490


>gi|14132747|gb|AAK52285.1| membrane-bound cation-proton-antiporter CzrA [Pseudomonas putida]
          Length = 1051

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/596 (10%), Positives = 150/596 (25%), Gaps = 62/596 (10%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  +G+         +  +D  P                 +++ ++++          
Sbjct: 16  VLLAVLGMAGVGIGSYQKLSIDAVPDI---------------TNVQVQINTAAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +    + + + L          R   +++T+ F +         +V   L     +
Sbjct: 61  VEQRITYPVETVMAGLPGLQETRSLSRPGISQVTVIFEEGTDIYFARQQVNERLSTAREQ 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH------AIEQSMEIIRQRIDQIGISES 179
           L  D    L   +T      + +    +             +           Q+   + 
Sbjct: 121 LPEDISPTLGPISTGLGEIYLWTVEAEEGATKEDGSAYTPTDLRTIQDWIIRPQLRNVKG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         Q     DP +L     T   +    +  N +        R  +     
Sbjct: 181 VAEINTIGGYAKQFLIAPDPKKLAAYKLTLGDLQNAVLRNNENVGAGYIERRGEQLLIRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+D  +I G                    I    +            +G    +   
Sbjct: 241 PGQVKDMDDIRG--------------------IIVSNVDGVPIRIRDVAEVGLGKELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +  G     +          I           + 
Sbjct: 281 AATENGREVVLGTVFMLIGENSREVAQAVGQRLEEINRTLPKGVKAITVYDRTTLVDKAV 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+ VLF+ +   +  L+    I L+++ T   +     +  L S+  
Sbjct: 341 ATVKKNLVEGAALVIAVLFLFLGNIRAALITATIIPLSMLFTFTGMVGNRVSANLMSLGA 400

Query: 420 IVLGIGLAVDSNILVNER-----IREENRKNQSVFCS-----LDMGFSRAYSTIFDSNIT 469
           +  GI   VD  +++ E         +    + +  +     +      A   +    I 
Sbjct: 401 LDFGII--VDGAVVIVENAIRRLAHAQAHHGRQLTRAERFHEVFAASREARRALVFGQII 458

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            ++  + +F      G      A T+  ++L +M  +++ V A +   I  K  +  +  
Sbjct: 459 IMVVYLPIFALTGVEGKMFHPMAFTVVTALLGAMILSVTFVPAAIALFITGKVKEEENFV 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                      +            G      +  +              +G   + 
Sbjct: 519 MRRARLAYEPALRWVLGHRALVVGGALGAILLTGLVASRMGSEFIPSLSEGDFAMQ 574



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+  GI  +++A    + L G +V + +V+   +R    L     S    +
Sbjct: 915  FALTGGVLALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIR---NLLQEGRSLDQAV 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 972  WEGAITRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTMLTLLVLPV 1031

Query: 819  ILLFIYDW 826
            +  + +  
Sbjct: 1032 LYRWTHGR 1039


>gi|86134744|ref|ZP_01053326.1| putative copper/silver resistance-related permease [Polaribacter
           sp. MED152]
 gi|85821607|gb|EAQ42754.1| putative copper/silver resistance-related permease [Polaribacter
           sp. MED152]
          Length = 1178

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/590 (12%), Positives = 172/590 (29%), Gaps = 43/590 (7%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
            +   +I  +G+     +       + FP    + +I            +   +  + + 
Sbjct: 27  YVAIFLILVLGI-----SAYFSMPREDFPEI-KETKIY--------ISTLYPGNTAEDIE 72

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG--VNSK 125
             +    ++    L        + ++  + I + F D    E    +V   L     +  
Sbjct: 73  KLITDPLEDQLKGLSGIVEITSTSQEDYSMIIVEFDDDMDVEVAKQRVKDKLDTEKASED 132

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLG 185
                   +     +  +S  +   NI+    + +++  E      D I       Q   
Sbjct: 133 WPTFNGAKVDPNAFDLSMSEEIPFLNINISGDYPLQKLKEFAEYLQDDIEDLSEVKQADI 192

Query: 186 SHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVED 245
                 ++    D  ++  +  +   ++      N +           R +      ++ 
Sbjct: 193 RGVQDKEVEIAVDIYKMMAVEVSFDDITSAIQRGNVTSSAGNLIASGQRRTIRILGEIDK 252

Query: 246 KVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA 305
             ++                     +           +      +               
Sbjct: 253 PSDLE--------------------NFVIKSERGNSIYLKDVATVTFREKDKTTFARKEG 292

Query: 306 PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGT 365
             +       +A  +     E   ++    +A   P  L++    ++             
Sbjct: 293 KQVVMLDVKKRAGKNMVAAAEEVKVIVEEAKASYFPSNLDVTITNDLSDKTIGQVDDLVN 352

Query: 366 CAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIG 425
             I   ++++++ M  L  K  L   F+I +++ ++L +L  LG TL    + G+++G+G
Sbjct: 353 NIIFGVILVVIVLMFFLGFKNALFVGFAIPMSMFMSLMILGALGYTLNTMILFGLIMGLG 412

Query: 426 LAVDSNILVNERIRE-ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG--- 481
           + VD+ I+V E +    + +  S   +   G       I  S +T + A V L  +    
Sbjct: 413 MLVDNGIVVVENVYRLMDEEGMSRVEAAKKGIGEIAYPIIISTVTTVAAFVPLGLWPGLF 472

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFII---RYKKMKSIDINPLSRFFLIPDCI 538
           G  +  F IT+ + +  S+  AI     ++   +     +   +  I        I   I
Sbjct: 473 GQFMIYFPITLSVVLGSSLVVAIFFNSVLVSQFMTTEDKEMPLNKIIRTSVIVAGIGILI 532

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            I     R  G  +     +  +  L              + L     + 
Sbjct: 533 LIFGGAYRALGTVMIFTAIMLWVYRLILRKAANYFQRNTLVWLENFYEKM 582



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 76/214 (35%), Gaps = 5/214 (2%)

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
           V+ +       A   V  +V++      P +            +   +   +  +I   I
Sbjct: 300 VKKRAGKNMVAAAEEVKVIVEEAKASYFPSNLDVTITNDLSDKTIGQVDDLVNNIIFGVI 359

Query: 679 AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            ++I +     +  AL     + + +  +L      G   N   +  ++  +G  V++ +
Sbjct: 360 LVVIVLMFFLGFKNALFVGFAIPMSMFMSLMILGALGYTLNTMILFGLIMGLGMLVDNGI 419

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIG 795
           VV + +     +    +S  +   K I E     + +++    + +P+ +W    G  + 
Sbjct: 420 VVVENV--YRLMDEEGMSRVEAAKKGIGEIAYPIIISTVTTVAAFVPLGLWPGLFGQFMI 477

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            F I ++  +  +   +IF  + ++        K
Sbjct: 478 YFPITLSVVLGSSLVVAIFFNSVLVSQFMTTEDK 511



 Score = 67.8 bits (163), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 92/296 (31%), Gaps = 37/296 (12%)

Query: 568  GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
              N    F   I    +A+  V    V +          S       K  +         
Sbjct: 854  RYNKSALFNQKITFRDMASGQVRAIPVSAVASQTNSSGFSAIKHRDTKRVVTVYSQLAPG 913

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII--SAIAMLIYIW 685
             V    V+  +K+++          N +  G +I  +  ++  +G         +   + 
Sbjct: 914  YVDAAAVVNQIKEEMKNFEGKPENINIDYTG-QIEEQNKQQAFLGGAFFKGLALIFFILI 972

Query: 686  IRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIGYSVNDKVVVYD- 742
             +F         +  + L      G   L G  F +   +  +++L G  VN+ VV+ D 
Sbjct: 973  FQFNSVSKPGIIMIAIFLSFIGVFGGIVLTGSSFVIMMTMMGIISLAGIVVNNGVVLLDY 1032

Query: 743  ------RMRK----NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---- 788
                  R ++        Y       + + K+    L   + T++   + ++P+A+    
Sbjct: 1033 TQLLIDRRKEKLGLEDNAYLPKKDLLEAVVKAGKARLRPVLLTAITTILGLIPLAIGLNI 1092

Query: 789  --------------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                           GG  +      A  + +G+ VA   ++ +   +   I  ++
Sbjct: 1093 DFFSLFSEFDPKIYMGGDNVIFWGPLAWTVIYGLFVATFLTLIVVPILFYLITQFK 1148


>gi|311748451|ref|ZP_07722236.1| putative cation efflux system [Algoriphagus sp. PR1]
 gi|126576966|gb|EAZ81214.1| putative cation efflux system [Algoriphagus sp. PR1]
          Length = 1016

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 81/676 (11%), Positives = 187/676 (27%), Gaps = 45/676 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M        +   +  + L++     L    +   P                   +V++V
Sbjct: 1   MVRFLLARPIAVFMTFMALIVFSFIVLRTLPISLLPPIDVP-------------QIVVKV 47

Query: 61  DEDDFVNGFLQM-YSDELRS---FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +  +     ++      +R     L                I L+F  S   E     V 
Sbjct: 48  NYPNASPEAIEQNVLSPIREGLITLNGLEEMDSKAGSEVGTIRLTFDYSTQMELAYIDVN 107

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + + L  D  +  ++     +I +   Q    + +   +E S         +I  
Sbjct: 108 EKIDRLTNSLPEDLVRPEVIRINTSDIPVARVQVVPKEGVDE-VEVSQLAENVLKKRIEQ 166

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                    + +    +  + +   L  L  T   +       N    G        R  
Sbjct: 167 LPGVSLVDINGKKNRIISVKPNKEALAALGMTQQNVISTIQSSNADLDGISVKDGQFRYY 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 V+   +I  + +  A     P      V+    EM     +      +      
Sbjct: 227 LRLATRVDTPDDIKNLPIRTAEGAIIPLNKLAEVNYETKEMLGYHLYGEQESLVITVHKQ 286

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                    P                         +  L     P     + +       
Sbjct: 287 ASAKMNELMP---------------------ELKASLELFRVDYPQVDFDLTQDQSNLLN 325

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            + S  + +          VLF+ +   +  L+   S+  +++++  +      ++ + S
Sbjct: 326 AAISNLETSLLFGGIFAFAVLFLFMKDYRLPLIIGVSLPSSLVISFLIFYFFNLSINIIS 385

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           ++G+ LGIG+ +D+ I+V + I  +  +   +F +   G +     +  S +T L   + 
Sbjct: 386 LSGLALGIGMLIDNAIIVLDNITRKRDEGLPIFEACVEGVNEVMGALISSVMTTLAVFIP 445

Query: 477 L-FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           L F  G      F   + ++ ++S+   ++ +   M++++ + K K I       FF   
Sbjct: 446 LVFLSGISGALFFDQAVAVAAILSVSLGVAFILLPMLYLLLFGKSKKIIEKEEGPFFRRI 505

Query: 536 DCIAIQFMRA----RFWGVGISILFSICSIC-LLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                         R   +    +     +   L           K    L +  N P+ 
Sbjct: 506 LSGYELIYSKITSSRKVAILCFAILIPLGLAVSLLLKTEGLPEIEKLDATLEIEWNEPIG 565

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               +  + +L                + +     G++  Q   L ++ K          
Sbjct: 566 ALENKGRVVALLKELQGSYEQAESDVGVRQFLLFDGENSIQQAFLYLLFKDEQSKEQKIA 625

Query: 651 IQNTEIVGPKISRELI 666
              + +         I
Sbjct: 626 DIRSYLNDNYPEASFI 641



 Score = 82.0 bits (200), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 77/267 (28%), Gaps = 13/267 (4%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
                +  +              L      +          +     Q             
Sbjct: 752  NDRFEYLLRNTNVSASDSTSYALSEFLEYEYENHYKYITADRGGIYQSAYILDEEPEAKR 811

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
                           +        +  ++LI   ++ V    +   I       +   L 
Sbjct: 812  SDFFSWAQTKDLGVEMTGQYFKDKENLQQLIGILLISV---LLLYFILAAQFESFIQPLI 868

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRK---NMK 749
             + TL L I        +FG   N+ +   ++ ++G  VND ++  D   R+R+    + 
Sbjct: 869  VVFTLPLGIGGAFLVLWIFGASLNVMSAIGLVVMLGIMVNDAILKIDTINRLREKYDEID 928

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
              +        +  +    L   + TS+   ++++P+      G  +       +  G+ 
Sbjct: 929  SISPMEGLEKALHGAGQIRLKPILMTSITTILALIPIVFSSGLGADLQRPLVYAVIGGLT 988

Query: 807  VAASSSIFIAAPILLFIYDWRAKNARI 833
            +   ++++   P+  + +  + K   +
Sbjct: 989  IGTFTALYFV-PLAYWFFVPKKKLKAL 1014



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 64/180 (35%), Gaps = 7/180 (3%)

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA 696
            + +     V     Q+   +       L    + G I +   + +++     +   L  
Sbjct: 303 ELFRVDYPQVDFDLTQDQSNLLNAAISNLETSLLFGGIFAFAVLFLFM---KDYRLPLII 359

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
             +L   +  +   F  F +  N+ +++ +   IG  +++ ++V D +    +     + 
Sbjct: 360 GVSLPSSLVISFLIFYFFNLSINIISLSGLALGIGMLIDNAIIVLDNI---TRKRDEGLP 416

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +   + +NE +G  + + M      +P+    G     F    A  +    S S+ +A
Sbjct: 417 IFEACVEGVNEVMGALISSVMTTLAVFIPLVFLSGISGALF-FDQAVAVAAILSVSLGVA 475


>gi|149374385|ref|ZP_01892159.1| putative silver efflux pump [Marinobacter algicola DG893]
 gi|149361088|gb|EDM49538.1| putative silver efflux pump [Marinobacter algicola DG893]
          Length = 1048

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/610 (11%), Positives = 160/610 (26%), Gaps = 41/610 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N  ++++   ++   GL         ++ +D  P       I                
Sbjct: 10  LHNRFFVLLATLILTGWGLYSV-----KETPIDAIPDLSDVQVI---------VKTPYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          +              + + + F D         +V  +L 
Sbjct: 56  QAPQVVEDQVTYPLTTAMLSVPGAKTVRGYSFFGDSFVYVIFDDDTDLYWARSRVLEYLS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L    K  L    T                     E           ++      
Sbjct: 116 QVAGQLPDAAKPELGPDATGVGWVYSY-ALVDRTGQHDLSELRAIQDWFLKFELQTVPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ Q     +P RLR    T  ++       N      +  +          
Sbjct: 175 SEVASVGGMVKQYQVVVNPDRLRAHNITLQRIHVAINSANQETGASVVEMAEAEYMVRVT 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++++ ++                    V +  ++ G     +   D    P       
Sbjct: 235 GYLQNEDDLR------------------QVPLGVNDNGKPLLLKDVADIQLGPQIRRGIA 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   I   +   +   TI+        ++A        +           +  
Sbjct: 277 ELNGEGEVAGGIVVMRFGENALETIQGVKQRLEEIKASLPDGVEVVPTYDRSTLINNAVD 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
              G       +V+++  + + + +  LV   S+ + ++    ++   G    + S+ GI
Sbjct: 337 NLYGKLLQEFLVVILICAVFLFHLRSSLVVIVSLPVGILAAFVVMHAQGINANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD  I++ E + +   +      +     SRA   +  +   +L+   V F  
Sbjct: 397 AIAIGAMVDGAIVMVENVHKHMERTPLTPENRWAVMSRAAGEVGPALFFSLMIITVSFLP 456

Query: 481 -------GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF- 532
                   G      A T   ++  +   AI++V  +M + IR K +             
Sbjct: 457 VFTLEAQEGKLFAPLAFTKTYAMAAAAGLAITLVPVLMGYFIRGKVLPEHRNPINRLLIA 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
           L    I     R      G  ++  I                 +G +         + + 
Sbjct: 517 LYRPAIGWALRRPALMLAGGLVVLIIGFWPANKLGSEFMPPLDEGDLMYMPTTYPGISIG 576

Query: 593 VVRSNLESLQ 602
             R  L+   
Sbjct: 577 KARQILQQTD 586



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 48/124 (38%), Gaps = 1/124 (0%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + +LI     F    +L  I +L + I          GI  N+ ++  +   IG  V+
Sbjct: 346 FLVVILICAVFLFHLRSSLVVIVSLPVGILAAFVVMHAQGINANIMSLGGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLI-DKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
             +V+ + + K+M+    +   R  +  ++  E      ++ M   +S LP+        
Sbjct: 406 GAIVMVENVHKHMERTPLTPENRWAVMSRAAGEVGPALFFSLMIITVSFLPVFTLEAQEG 465

Query: 795 GSFA 798
             FA
Sbjct: 466 KLFA 469



 Score = 38.9 bits (88), Expect = 3.9,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 90/289 (31%), Gaps = 18/289 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I L +  G    ++    + +     + + L+ V           I  +N     
Sbjct: 756  LERYPINLRYPQGYRDSVEQMRLLPMVTPNGQRIALADVADIRIDKGPPMIKSENARING 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              LV ++ +   S  +     + K+                   +    L     + V +
Sbjct: 816  WTLVDIEGRDLGSWVREAQSVVQKQIDLPAGYSLAWSGQYEYMQRAKERLT----LVVPL 871

Query: 676  SAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   ++I +++ F+    +G I  TL   +   +    L G   ++      + L G +V
Sbjct: 872  TLAIIIILLYLNFRNLTEVGIILGTLPFGMIGGIWLMYLLGYNLSVAVAVGFIALAGVAV 931

Query: 735  NDKVVV-------YDRMRKNMKLYTTSIS---FRDLIDKSINETLGRSVYTSMAAFISVL 784
               V++            + +      +S    R  I     + +   + T  A    ++
Sbjct: 932  EIGVLMLVYLNQSLQNALETVDHQPGKLSADALRQAISHGAAQRVRPIMMTFAAIVAGLV 991

Query: 785  PMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+ +    G  V+   A PM  G+V     ++ +   I       R K 
Sbjct: 992  PIMLGSGTGSEVMQRIAGPMIGGMVTTLILTLLLIPVIFYLWQRARLKK 1040


>gi|323529590|ref|YP_004231742.1| acriflavin resistance protein [Burkholderia sp. CCGE1001]
 gi|323386592|gb|ADX58682.1| acriflavin resistance protein [Burkholderia sp. CCGE1001]
          Length = 1062

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/636 (9%), Positives = 159/636 (25%), Gaps = 49/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  +I       A P  L  + +D  P                   ++   
Sbjct: 8   LKRPYTFIVMAILIVL-----ATPFVLFTTPVDVLPEINIPV-----------VSIIWT- 50

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
             +      +      +        +                + +    +   +    + 
Sbjct: 51  -YNGLSAEDMAHRIASVNERSLTTTVNDIEHIESQSLAGITILKVFLQPNANIQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    ++       L+++ +   I ++    +  ++     + +   +     Q+ 
Sbjct: 110 VAVEQAQLKQMPPGATPPLVISYSASSIPVIQLGLSSTKLSEQ--QLNDTALNFLRPQLV 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + +   L     T   +       N         +     
Sbjct: 168 TIPGAAVPYPYGGKSRLISVDLNTRALLAKGLTPLDVVSAFNAQNLILPTGTAKIGPREY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +            +                     DI    +     +     ++    +
Sbjct: 228 TINMNGSPSTLEGL--------------------NDIPVRTVNGATTYLREVAHVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    + T   L    RA   P              
Sbjct: 268 PQTNIVRQNGHRGVLISVLKNGSASTLSIVNTLHGLLPAARAALPPDLNITALFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         + A L   ++ + +   +   +   SI L+++ +L  L  LG T+ + 
Sbjct: 328 KAAVEGVLREAVVAAALTAAMILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHMGTNLHDAILEGAGEIAIPALVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + ++ +           S F 
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYILSRTLVPTLAMLLMGHAHKPK-PDARPSLFQ 506

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +       F R R   + I     +              +       LG      VD  
Sbjct: 507 RLYRRFDNGFERMRAAYIVILSSLLVRRGRFGSLFLGFCVVSMGLAFVLGEDFFPSVDAG 566

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P   
Sbjct: 567 NIRLHMRAPTGTRIEETARLADEVEKVIREVVPEKE 602



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 77/224 (34%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V   Y   D      V   V K + +        +   V  ++         +G+ 
Sbjct: 827  NIRPVIDLYVSVDKRDLGSVANQVDKLVQKARATLPRGSQITVRGQVETMRTSYFGLGLG 886

Query: 675  ISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +L+Y+ I      W   L  ++ L   +   +    L G   ++ A+   +  +G
Sbjct: 887  VAMAIVLVYLLIVVNFQSWVDPLIIVSALPAALAGIVWMLFLTGTHLSVPALTGAIMTMG 946

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++    R   +  +          ++    +   + T+ A  I ++PMA+   
Sbjct: 947  VATANSILMVAFAR---QRLSAGAPPLTAALEAGASRIRPVLMTAFAMIIGMIPMALGLG 1003

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G          +  G++ A  S++F    +   I+   A+  R
Sbjct: 1004 EGAEQNAPLGRAVIGGLLFATVSTLFFVPVVFAGIHTRLARRHR 1047



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 4/142 (2%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +     W        ++ L I  +L      G   N+  +  +   +G  V+D  V  
Sbjct: 348 MILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIMTLGGLALAVGILVDDATVTI 407

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           + +    +      +  D I +   E    ++ +++   I  +PM    G     F +P+
Sbjct: 408 ENI---ERHLHMGTNLHDAILEGAGEIAIPALVSTLCICIVFVPMFFLTGVARYLF-VPL 463

Query: 802 AFGIVVAASSSIFIAAPILLFI 823
           A  +V A  +S  ++  ++  +
Sbjct: 464 AEAVVFAMLASYILSRTLVPTL 485


>gi|59712739|ref|YP_205515.1| acriflavin resistance plasma membrane protein [Vibrio fischeri
           ES114]
 gi|59480840|gb|AAW86627.1| acriflavin resistance plasma membrane protein [Vibrio fischeri
           ES114]
          Length = 1032

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/532 (12%), Positives = 152/532 (28%), Gaps = 31/532 (5%)

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +     L    ++    ++          +    +TL F+     +     V   +  
Sbjct: 56  SPEDSERLLVRPMEQELRSIEGIKEMTAVAGEGHGSVTLEFSVGVDLDKALTDVREAVDL 115

Query: 122 VNSKLNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           V   L  +  +  +   T   E +++            A++ +    R+  D++   +  
Sbjct: 116 VKPNLPEESDEPTVHEVTLAAEQAVLSVVLYGTVPERTAVQIA----RKLQDKLESYKQI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
           ++   +      +    DP  L       A +     L N           + R S    
Sbjct: 172 LEVDIAGDREDVVEIIVDPLLLESYGLDQAAIYNLIALNNRVVAAGFVDTGYGRFSVKVP 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            + E   ++                    +++     G +         + K        
Sbjct: 232 SVFESLKDV--------------------LELPIKVDGKQVVTFGDIATVRKAFRDPNSY 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGIL--AAMLRAGSLPIKLNIVEERNVGADLGS 358
             L            ++  +   T+E    +   A          L              
Sbjct: 272 ARLNGEKAIVLDIKKRSGENIIETVEIVKAVLSGAQELDDWPNNLLVKYTWDESKDVKNM 331

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
            +  +        LV+IV+  I+      L+   SI  + +  L LL++ G T+ +  + 
Sbjct: 332 LNDLQNNILSAILLVVIVIIAILGART-ALLVGISIPGSFLTGLLLLAVSGLTINIVVLF 390

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            +++ +G+ VD  I+V E      ++      +      R    I  S  T L A   L 
Sbjct: 391 SLIMAVGMLVDGAIVVTEYADRRMQEGAHRVEAYREAAQRMAWPIIASTATTLAAFAPLL 450

Query: 479 FFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F+    G  ++   +T+  ++  S+  A+  V  +     + +++       L       
Sbjct: 451 FWPDITGEFMKYLPLTLIATLSASLVMALLFVPVLGSLFGKPQQVLPKKRVKLQALSRGD 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
              A    +  +  +  S+      + L  T  +  G  +       V    
Sbjct: 511 YSQAEGVTKLYYQTLSFSLKHPFKVLLLAITLAVGIGFSYAKAGLGVVFFPD 562



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/263 (8%), Positives = 81/263 (30%), Gaps = 12/263 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V   + V    + +  ++ +  +   +    +   L   +    + +    +++ V 
Sbjct: 244 PIKVDGKQVVTFGDIATVRKAFRDPNSYARLNGEKAIVLDIKKRSGENIIETVEIVKAVL 303

Query: 640 KKITEIVPLSTI--QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI 697
               E+                K  + ++      ++ + + ++I I        AL   
Sbjct: 304 SGAQELDDWPNNLLVKYTWDESKDVKNMLNDLQNNILSAILLVVIVIIAILGARTALLVG 363

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            ++       L   A+ G+  N+  + +++  +G  V+  +VV +      +        
Sbjct: 364 ISIPGSFLTGLLLLAVSGLTINIVVLFSLIMAVGMLVDGAIVVTE---YADRRMQEGAHR 420

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
            +   ++        + ++     +  P+  W    G  +    + +   +  +   ++ 
Sbjct: 421 VEAYREAAQRMAWPIIASTATTLAAFAPLLFWPDITGEFMKYLPLTLIATLSASLVMALL 480

Query: 815 IAAPILLFIYDWR----AKNARI 833
               +       +     K  ++
Sbjct: 481 FVPVLGSLFGKPQQVLPKKRVKL 503



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 85/252 (33%), Gaps = 20/252 (7%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +N   +            + + ++ ++    +    +  L  ++  +  +     ++  
Sbjct: 780  ITNFARIIPTHKQDTIHRIDGHRILSVKADMSEGYNLSIELPKIEMALKNLGLPKGVEFK 839

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFAL 713
                 +             +++   M I +  +F  +Y A   ++ ++           +
Sbjct: 840  LRGQNEEQNNSAAFLQNAFLVALAVMAIILVTQFNSFYQAFLILSAVLFSTVGVFAGLLI 899

Query: 714  FGIEFNLTAV-AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            F   F +      V++L G  VN+ +V+ D       L    I   D I ++  + L   
Sbjct: 900  FQRPFGIIMSGIGVISLAGIVVNNNIVLIDTYN---TLRKEGIEKVDAILRTGVQRLRPV 956

Query: 773  VYTSMAAFISVLPMAV------------WGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
            + T++   + ++PM +            +G          A  +A G+  A   ++ +  
Sbjct: 957  MLTTVTTILGLMPMVLEMNIDLVNQKVEFGAPSTQWWSQLATAVAGGLAFATVLTLVLTP 1016

Query: 818  PILLFIYDWRAK 829
             +L+   D + +
Sbjct: 1017 CLLMLGRDKKVR 1028


>gi|209863942|gb|ACI88887.1| AlnT2 transporter [Streptomyces sp. CM020]
          Length = 741

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 77/576 (13%), Positives = 186/576 (32%), Gaps = 63/576 (10%)

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
           + A      +++     + A      +        L +        +    S  +    +
Sbjct: 124 SVAYAQVTYEVAQADVTDAARADLEHVAEQGERAGLAVSMGGTAVNEESHQSAAELIGIV 183

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
           +A LV+++ F  ++     L+      L  I  + + +      +  S   ++LG+ +A+
Sbjct: 184 IAALVMVITFGSLVAAGLPLLTALFGVLAAICGITVATSFIDLSSSTSTLALMLGLAVAI 243

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGF 488
           D  + +  R R E ++      +       A S +  + +T +IA   L   G   +   
Sbjct: 244 DYALFIVSRYRGELKEGHDPEEAAGRALGTAGSAVVFAGLTVVIALAGLSVIGIKILSDI 303

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRY---KKMKSIDINPLSRFFLIPDCIAIQFMRA 545
            +    ++++++  A++++ AM+ F        K+K+  +  + +    P  +       
Sbjct: 304 GLGAAFAVVVAVVIALTLLPAMLGFAGGRISAGKLKTRRMRAIEQGEREPMGVRWARFVL 363

Query: 546 RFWGVGISILFS-------------------------ICSICLLFTHGLNYGIDFKGGIQ 580
           R     + +  +                                 T    +G  + G + 
Sbjct: 364 RNPVKVLGVSVAGLLLLAIPALSLQLGMPGDSTATPGSTQRIAYDTVTDGFGAGYNGPLT 423

Query: 581 LGVLA----NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           + V A    +         + L+ L            E   +  ++  PG S      + 
Sbjct: 424 VVVDARGSDDPKAAAQDAVTLLDDLPDVASVSPVSFNETGDVALIRAVPGSSPTSEDTVG 483

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIR------KGIVG---VIISAIAMLIYIWIR 687
           +V         L      E++    +   I         ++    V++    +L+ +  R
Sbjct: 484 LVSDIRDRGAALHDDTGAELMVTGTTALNIDISGKLNDALIPYLCVVVGLALILLMLVFR 543

Query: 688 FKWYFALGAITTLILDITKTLGFFA----------LFGIE-----FNLTAVAAVLTLIGY 732
                 L A    +L +  TLG             +FG++      ++  +  V  + G 
Sbjct: 544 -SILVPLKAAAGFLLSVLATLGVVVAVFQWGWLADVFGVDQTGPIVSVLPIFMVGVVFGL 602

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG-G 791
           +++ +V +  RMR+    Y      ++ +         R V  +    ISV    ++   
Sbjct: 603 AMDYQVFLVTRMREE---YVHGAEPKEAVIAGFRH-GARVVTAAAVIMISVFAGFLFSDT 658

Query: 792 SVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDW 826
           ++I S  + +A  +   A    + I   ++  +   
Sbjct: 659 ALIKSIGLGLAAAVFFDAFVVRMTIVPAVMALLGRR 694



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/212 (10%), Positives = 67/212 (31%), Gaps = 7/212 (3%)

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +  ++S  +   + D        +   +   Q     + A          +         
Sbjct: 98  VGDLKSASQVANVVDPYTGGTVSKDGSVAYAQVTYEVAQADVTDAARADLEHVAEQGERA 157

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                + G  ++ E  +     + I   A+++ I         L  +T L   +    G 
Sbjct: 158 GLAVSMGGTAVNEESHQSAAELIGIVIAALVMVITFGSLVAAGLPLLTALFGVLAAICGI 217

Query: 711 ---FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
               +   +  + + +A +L L   +++  + +  R R  +K         +   +++  
Sbjct: 218 TVATSFIDLSSSTSTLALMLGL-AVAIDYALFIVSRYRGELKE---GHDPEEAAGRALGT 273

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
                V+  +   I++  ++V G  ++    +
Sbjct: 274 AGSAVVFAGLTVVIALAGLSVIGIKILSDIGL 305


>gi|239995113|ref|ZP_04715637.1| AcrB/AcrD/AcrF family protein [Alteromonas macleodii ATCC 27126]
          Length = 700

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 70/590 (11%), Positives = 154/590 (26%), Gaps = 67/590 (11%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +    +   G++      +       +P+                     +  
Sbjct: 9   KRPVAVSMFTFAVLLFGMVSLGRLSVNLLPDLSYPTLT--------------IRTDYDGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E    +K       + R  Q+ + LSFA     +  + +V   L  
Sbjct: 55  APGEVEQLVSKPIEEAIGVVKGVRKVTSTSRAGQSDVVLSFAWGTDMDFASLEVREKLDV 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-----HAIEQSMEIIRQRIDQIGI 176
           +  +L +D +K  L+        ++       +  S           +   +Q    +  
Sbjct: 115 L--QLPLDIEKPRLLRFNPSLDPVIKLGLTAQRDTSGLSVAQMKRLRLYAEQQVKRALES 172

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            E          +  ++    D  +  QL     ++       N +  G           
Sbjct: 173 VEGVAAVRVGGGLENEIHILIDQQKASQLSIPITRIIDRVSAENINAAGGRIDNAAQAFL 232

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                  E   +I  + +                         R         +      
Sbjct: 233 VRTLNQFETLSDIENLFIGRFE--------------------GRNIQLKDVATVESAYKD 272

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                        +     +   +     +        +                     
Sbjct: 273 RDVVTRFNGNEGIEIAIYKEGDANAVNVAQKVASRLNEVNNNLPSNYTLSEIYDQSVFIK 332

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +    K    +   L ++VL++ +      ++   SI ++VI T  L+     +L + S
Sbjct: 333 QAIDNVKSAAVMGGILAMLVLYLFLKDFWATVIISVSIPVSVIATFNLMYANDISLNMMS 392

Query: 417 IAGIVLGIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGF---------------SR 458
           + GI L +GL VD++I+V E I               + +                    
Sbjct: 393 LGGIALAVGLLVDNSIVVLENIDRHKKLKMAGSDNATANEKTTAEATETEASAASEGTKE 452

Query: 459 AYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
               I  S +T +   V L F     G   +  A+T+  ++  S+  A++++ AM     
Sbjct: 453 VSGAIVASTLTTMAVFVPLIFVEGIAGQLFKDQALTVSFALAASLVVALTLIPAM----- 507

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
            +KK K    +        P      F +  ++               L 
Sbjct: 508 AHKKKKQQLDHEEVFTTPAPPPPTSTFGKVMYYLTLPIRWVFRLIFVFLP 557



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 88/263 (33%), Gaps = 23/263 (8%)

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + L  V +   + +  D+  +    E   +   +    ++V   + +     ++   +P
Sbjct: 257 NIQLKDVATVESAYKDRDVVTRFNGNEGIEIAIYKEGDANAVNVAQKVASRLNEVNNNLP 316

Query: 648 LSTIQNTEIVGPKISRELIRKGI-VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            +   +         ++ I       V+   +AML+       ++  +    ++ + +  
Sbjct: 317 SNYTLSEIYDQSVFIKQAIDNVKSAAVMGGILAMLVLYLFLKDFWATVIISVSIPVSVIA 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL------ 760
           T        I  N+ ++  +   +G  V++ +VV + + ++ KL                
Sbjct: 377 TFNLMYANDISLNMMSLGGIALAVGLLVDNSIVVLENIDRHKKLKMAGSDNATANEKTTA 436

Query: 761 ---------IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
                      +   E  G  V +++      +P+       G +    A+ ++F +   
Sbjct: 437 EATETEASAASEGTKEVSGAIVASTLTTMAVFVPLIFVEGIAGQLFKDQALTVSFALAA- 495

Query: 809 ASSSIFIAAPILLFIYDWRAKNA 831
              S+ +A  ++  +   + K  
Sbjct: 496 ---SLVVALTLIPAMAHKKKKQQ 515


>gi|217975247|ref|YP_002359998.1| CzcA family heavy metal efflux pump [Shewanella baltica OS223]
 gi|217500382|gb|ACK48575.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS223]
          Length = 1049

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 73/593 (12%), Positives = 168/593 (28%), Gaps = 45/593 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           ++I+  MI   G+       L ++ LD  P       I                     V
Sbjct: 16  VLIIAIMITVWGV-----QELRKTPLDALPDLSDVQVI---------IKTPYPGQAPKLV 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +          +              + + + F D         +V  +L  ++S+L
Sbjct: 62  EEQVTYPLSTAMLAVPGAKTVRGYSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQISSRL 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             + + +L    +                     +           ++       +    
Sbjct: 122 PQNVQPSLGPDASGVGWVFEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVSEVATV 180

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +        +P ++       A +       N+   G +  +         +   +  
Sbjct: 181 GGMEQTYQIVLEPDKMAIYKLDIATIKQAIDKANSEAGGSVIEMAEAEYMVRAKGYRQTL 240

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +   I L   + +    T K V  +       R   E+  +                  
Sbjct: 241 EDFREIPLGITSPSGTGLTLKDVATVRKGPASRRGIAELDGE-----------------G 283

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   I   +   +   TI+        L+AG       I         L S        
Sbjct: 284 EVVGGIVVMRYGENALATIDAVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNLFSKV 343

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI + IG 
Sbjct: 344 VEEMLVVGLVCLLFLLHARSTLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIGA 403

Query: 427 AVDSNILVNERIREENRKN----------QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            VD  I++ E + +               +  +  +          +F S I   ++ V 
Sbjct: 404 VVDGAIVMIENLHKHLEHFKADHDREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFVP 463

Query: 477 LF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   ++  + F +I++V  +M + IR K               
Sbjct: 464 VFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSERSNPISRFLIA 523

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           I        ++     + ++++    +   +   G  +    + G  L +   
Sbjct: 524 IYQPSLKLVLKFPKVTLMLALIALASAWYPMTRMGSEFMPALEEGDLLYMPTA 576



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 82/243 (33%), Gaps = 13/243 (5%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +    +        E   L+   +   +  +    +   K  +   + +    +    G 
Sbjct: 802  ADIEINDGAPMLKSENGRLISWVFIDIEGTSIGEYIATAKTALDAELVVPPRYSYSFAGQ 861

Query: 660  KISRELIR---KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                + +    K ++ + ++ I +L+ +        ++  + +L   +  +     L   
Sbjct: 862  YEYMQRVDAKLKQVIPMALAVIFILLMMTFGSTIQASII-MLSLPFALVGSTWLLYLLDY 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLG 770
              ++     ++ L G +    VV+        + R+    Y +    ++ + +     + 
Sbjct: 921  NISVAVAVGMIALAGVAAEFGVVMLVYLNNAIKHRQEKDNYHSVNDLKEALIEGAVMRIR 980

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                T    F  +LP+      G  V+   A PM  G+V A   S+F+   + L IY  +
Sbjct: 981  PKAMTVATIFFGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLIYSRK 1040

Query: 828  AKN 830
             K 
Sbjct: 1041 LKK 1043



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +  K    L  K +  
Sbjct: 287 GGIVVMRYGENALATIDAVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNMKL----YTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K+++     +      ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEHFKADHDREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+          F   A    F +  AA  SI +   ++ +    +  + R
Sbjct: 463 PVFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSER 513


>gi|229008426|ref|ZP_04165883.1| hypothetical protein bmyco0002_52230 [Bacillus mycoides Rock1-4]
 gi|228752840|gb|EEM02412.1| hypothetical protein bmyco0002_52230 [Bacillus mycoides Rock1-4]
          Length = 700

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 67/563 (11%), Positives = 178/563 (31%), Gaps = 65/563 (11%)

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
             E +          +    +             S++        V    +++ F  V +
Sbjct: 103 VTEASKDKILDSIETTRNAGIQTELSGGDVTFSDSETSGMTEIVGVLVAFVVLAFTFVSF 162

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGAT--LTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              GL    +I    I  LA++         ++      +LG+ + +D  + +  R R++
Sbjct: 163 LVAGLPILTAIIGLAIGMLAIMIGTNYVEIQSVSLSLAAMLGLAVGIDYALFIINRFRQQ 222

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
             +  SV  S+ +    A S +  + +T +I  + L       +    ++   ++L ++ 
Sbjct: 223 LAQGDSVPESVAIATGTAGSAVIFAGLTVIIGLLGLSVTKIPFLIAMGVSAAFTVLAAVL 282

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR---ARFWGVGISILFSI 558
            ++ I+ A++  +         +           +            R   +       +
Sbjct: 283 VSLVILPAILGLVGHKIAPSKQNRFLQKMTGAGKNHAGSNKWGEFVIRRPLIVTIFAIGL 342

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPV----------------------------- 589
            ++  +    +N G+   G  +      R                               
Sbjct: 343 LAVISIPFFHMNLGLPSDGTTKSTETTERRAYDLLTQAYGEGFHASLMVVAKSEEATAET 402

Query: 590 -----DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 ++    NL  ++    +     G+   +        D      +++ ++ K  +
Sbjct: 403 QNAMNTIAKELGNLPDVKSVTPAIPGPSGKIYMISITPKTGPDDTKTKDLVKAIRDKSNQ 462

Query: 645 IVPLSTIQNTEIVGPKISRELIRKG------IVGVIISAIAMLIYIWIRFKWYFALGAIT 698
               + I+        ++ ++++K          +I+    +L+ +  R      L A+ 
Sbjct: 463 TEKKNEIELMVTGTAAMNIDIVQKLSDALPVFAALIVGLAYVLLVLVFR-SLLIPLKAVL 521

Query: 699 TLILDITKTLGFFA----------LFGIEFNLTAVA-----AVLTLIGYSVNDKVVVYDR 743
             +L +  TLG             +FG       +A      +  L G +++ +V +  +
Sbjct: 522 GFLLSLGATLGAVVFFVQDGHFQNIFGFPAAGPILAFLPVILIGILFGLAMDYEVFLVSK 581

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           MR+   +YT +   +  I + + E+    V   +      +   +   ++I S  + + F
Sbjct: 582 MRE---VYTHTGDPKRAIVEGMRESGRVVVAAGLIMMSVFIGFMLAPDTIIKSIGMALTF 638

Query: 804 GIVVAAS-SSIFIAAPILLFIYD 825
           G+   A    + I   +++ +  
Sbjct: 639 GVFFDAFIVRMTIVPAVMILMGK 661



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 82/243 (33%), Gaps = 10/243 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V   + + +        +  QN   +K     +      +   T   +       E    
Sbjct: 61  VLEEIKKDSAVDSVAAPMQLQNLSEDKTIGYAVVTYKVKAEKVTEASKDKILDSIETTRN 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFA----LGAITTLILD 703
           + IQ     G     +    G+  ++   +A  + +   F  +  A    L AI  L + 
Sbjct: 121 AGIQTELSGGDVTFSDSETSGMTEIVGVLVA-FVVLAFTFVSFLVAGLPILTAIIGLAIG 179

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
           +   +       I+    ++AA+L L    ++  + + +R R+ +       S  + +  
Sbjct: 180 MLAIMIGTNYVEIQSVSLSLAAMLGL-AVGIDYALFIINRFRQQLAQ---GDSVPESVAI 235

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +        ++  +   I +L ++V     + +  +  AF ++ A   S+ I   IL  +
Sbjct: 236 ATGTAGSAVIFAGLTVIIGLLGLSVTKIPFLIAMGVSAAFTVLAAVLVSLVILPAILGLV 295

Query: 824 YDW 826
              
Sbjct: 296 GHK 298


>gi|60681633|ref|YP_211777.1| putative cation transport related membrane protein [Bacteroides
           fragilis NCTC 9343]
 gi|60493067|emb|CAH07848.1| putative cation transport related membrane protein [Bacteroides
           fragilis NCTC 9343]
          Length = 1037

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/685 (11%), Positives = 181/685 (26%), Gaps = 51/685 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  +V++ +++  I       N      +D FP       +           ++ E   
Sbjct: 11  NNRIVVLIGALLLIIAGTYTAVN----MEVDVFPDLNAPTVV-----------VMTEAKG 55

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 56  MAPEEVERLVTFPVETAVNGATDVRRVRSSSTTGFSIVWVEFNWGTDIYRARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L  +  K  L   +     +++     D V     +           ++  +   
Sbjct: 116 VLGDALPSNVGKPTLGPQSSILGELLIIGLTSDSV--SLQDLRTMADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +     DP +++       ++       N +  G +             
Sbjct: 174 AQVTVLGGDIKEYQILLDPGKMKYYGIGLNEVIDVVKDMNQNAAGGVLYEFGNEFIVRGV 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                   +    +           +   V                   IG     +   
Sbjct: 234 LSTNKVEALRKAVIKNVDEVPITLENIAEVK------------------IGAKAPKMGLA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                  I   +       + + T +    L  + +     +K+     R       S  
Sbjct: 276 SERGKAGILLTVTKQPNTSTLDLTGKLDKSLEDLQKVLPKDVKVTTDIFRQSRFINNSID 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + +       V+IVL + ++  +  +++  +I L+VI+ +  L  LG T+   S+ GI
Sbjct: 336 NVQKSLYEGGIFVIIVLLLFLMNIRTTVISLITIPLSVIVAILTLKTLGLTINTMSLGGI 395

Query: 421 VLGIGLAVDSNILVNERIREE--------NRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +           + ++V   +          I +S +  + 
Sbjct: 396 AIAIGSLVDDAIVDVENVFKRLRENRQKPKEEQKNVLTVVFEASKEVRMPILNSTLIIVA 455

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDIN 526
           + V LFF     G  +    IT  +S+  S   A+++   +  +++   K          
Sbjct: 456 SFVPLFFLSGMEGRMLAPLGITFVISLFASTVVALTLTPVLCSYLLNKPKNNGEEHDPYL 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +       +     I  +  +  + +            +G   + +   
Sbjct: 516 VRKLKSGYGMALRWTLCHKKVVLGAIGAILIVSLVMMASFGRSFLPPFNEGSFTVSISTL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   +S            R +         T  +E          
Sbjct: 576 PGISLEESDKIGRMAEDILLSVPEVQTVGRKTGRAELDEHALGVNTSEIEAPFILDKRSK 635

Query: 647 PLSTIQNTEIVGPKISRELIRKGIV 671
                +  E +       +     +
Sbjct: 636 DEVLTEIREKIKVIPGVNIEIGAPI 660



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/208 (15%), Positives = 83/208 (39%), Gaps = 11/208 (5%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
            + LE ++K + + V ++T    +      S + ++K +         +++ +       
Sbjct: 303 DKSLEDLQKVLPKDVKVTTDIFRQSRFINNSIDNVQKSLY--EGGIFVIIVLLLFLMNIR 360

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN 747
             + ++ T+ L +   +      G+  N  ++  +   IG  V+D +V    V+ R+R+N
Sbjct: 361 TTVISLITIPLSVIVAILTLKTLGLTINTMSLGGIAIAIGSLVDDAIVDVENVFKRLREN 420

Query: 748 MKL-YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
            +       +   ++ ++  E     + +++    S +P+    G      A P+    V
Sbjct: 421 RQKPKEEQKNVLTVVFEASKEVRMPILNSTLIIVASFVPLFFLSGMEGRMLA-PLGITFV 479

Query: 807 VAASSSIFIA---APILLFIYDWRAKNA 831
           ++  +S  +A    P+L      + KN 
Sbjct: 480 ISLFASTVVALTLTPVLCSYLLNKPKNN 507



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/157 (19%), Positives = 73/157 (46%), Gaps = 10/157 (6%)

Query: 681  LIYIWIRFKWYFAL-GAITTLILDITKTLGFFALFGIE--FNLTAVAAVLTLIGYSVNDK 737
            +I++ +  ++  A    +  L L +    G F+++      ++ A+   ++L G +  + 
Sbjct: 875  VIFLLLFKEFKSATQSLVILLNLPLALIGGVFSIYFTSGILSIPAIIGFISLFGIATRNG 934

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++ DR      L  + +S  D I     + L   + T++++ ++++P+A+     G+ I
Sbjct: 935  MLLIDRYN---SLRASGMSVNDSILHGSLDRLNPILMTALSSGLALIPLALGGELPGNEI 991

Query: 795  GS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             S  A  +  G++ +   + FI   I L+I   + K 
Sbjct: 992  QSPMAKVILGGLLSSTILNGFIIPIIYLYISRKQEKK 1028


>gi|256004400|ref|ZP_05429381.1| protein-export membrane protein SecD [Clostridium thermocellum DSM
           2360]
 gi|281417624|ref|ZP_06248644.1| protein-export membrane protein SecD [Clostridium thermocellum
           JW20]
 gi|255991684|gb|EEU01785.1| protein-export membrane protein SecD [Clostridium thermocellum DSM
           2360]
 gi|281409026|gb|EFB39284.1| protein-export membrane protein SecD [Clostridium thermocellum
           JW20]
 gi|316940343|gb|ADU74377.1| protein-export membrane protein SecD [Clostridium thermocellum DSM
           1313]
          Length = 445

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 99/259 (38%), Gaps = 4/259 (1%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
              +G  +      R V   +     + +    I  +   G+   ++ L +   +   + 
Sbjct: 178 FSDEGAKKFEEATERLVGKRIAIYLDDQMISAPIVNEKISGKDRAVINLGFIDRNESIEY 237

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                   +   +      ++   + P I    +   I    ++ I + +++ + ++   
Sbjct: 238 AKELAAIIRSGALPFKLEAKDVNHISPIIGESALNISIYAGAVAIILVWLFMLLYYRVP- 296

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L A  TL+  +   +  F L G+   L  +A ++  +G SV+  V++++R+++ ++   
Sbjct: 297 GLVADITLLGQVAAIILVFVLSGMSLTLPGIAGLILTVGMSVDANVIIFERIKEELR--- 353

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
           +  + +  I+          +  ++   I+   +  +G   + SFAI +  GI+V   ++
Sbjct: 354 SGKTVQAAIELGFKRAFTAILDGNLTTLITAAVLYYFGTGAVRSFAITLGLGIIVNFITA 413

Query: 813 IFIAAPILLFIYDWRAKNA 831
           I     +L  +   R    
Sbjct: 414 IVATKIVLNALSQIRVLRK 432



 Score =  113 bits (282), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 116/427 (27%), Positives = 210/427 (49%), Gaps = 24/427 (5%)

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
                  L +   +  +                +S VL+  +        ++    II  
Sbjct: 20  TAIVFTGLKIPNTDFVIPKAYDGIRYGIDISGGVSAVLTAPDGITPTDDELDTVKGIIDT 79

Query: 170 RI------DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
           R+      D+    +   +R+       +     DP      +G TA ++F +V  +   
Sbjct: 80  RLEGKQIYDKTVTVDRVNKRVLVEIPYKKGGEYGDPYETIADIGATAMLTFREVDEDKVD 139

Query: 224 KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
                            Y + D++ + G  +  A A  DP+T   +V + F + GA++F 
Sbjct: 140 PETGV------------YEMTDRIVLQGNDIESAVAETDPQTQYGIVRLIFSDEGAKKFE 187

Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK------AQISGNFTIETAGILAAMLRA 337
           E T   +GK +A+ LD ++++AP++N+ I            I  N +IE A  LAA++R+
Sbjct: 188 EATERLVGKRIAIYLDDQMISAPIVNEKISGKDRAVINLGFIDRNESIEYAKELAAIIRS 247

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           G+LP KL   +  ++   +G  ++     A    ++L+ LFM++ Y   GLVAD ++   
Sbjct: 248 GALPFKLEAKDVNHISPIIGESALNISIYAGAVAIILVWLFMLLYYRVPGLVADITLLGQ 307

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           V   + +  L G +LTLP IAG++L +G++VD+N+++ ERI+EE R  ++V  ++++GF 
Sbjct: 308 VAAIILVFVLSGMSLTLPGIAGLILTVGMSVDANVIIFERIKEELRSGKTVQAAIELGFK 367

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           RA++ I D N+T LI   VL++FG GAVR FAIT+GL I+++  TAI   + ++  + + 
Sbjct: 368 RAFTAILDGNLTTLITAAVLYYFGTGAVRSFAITLGLGIIVNFITAIVATKIVLNALSQI 427

Query: 518 KKMKSID 524
           + ++   
Sbjct: 428 RVLRKPW 434



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 11/205 (5%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK--NRISLGLDLRGGSHLVLEV-D 61
            W   +   +    +            +      +PK  + I  G+D+ GG   VL   D
Sbjct: 2   RWSSGIKFFLVLAVIAAMTAIVFTGLKIPNTDFVIPKAYDGIRYGIDISGGVSAVLTAPD 61

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI--QNKITLSFADSR-----FKENIADK 114
                +  L      + + L+ + I   ++       ++ +     +             
Sbjct: 62  GITPTDDELDTVKGIIDTRLEGKQIYDKTVTVDRVNKRVLVEIPYKKGGEYGDPYETIAD 121

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +         +++ D          E    IVL  N+I+  ++    Q+   I + I   
Sbjct: 122 IGATAMLTFREVDEDKVDPETGVY-EMTDRIVLQGNDIESAVAETDPQTQYGIVRLIFSD 180

Query: 175 GISESTIQRLGSHRILIQLPGEQDP 199
             ++   +               D 
Sbjct: 181 EGAKKFEEATERLVGKRIAIYLDDQ 205


>gi|125973421|ref|YP_001037331.1| protein-export membrane protein SecD [Clostridium thermocellum ATCC
           27405]
 gi|125713646|gb|ABN52138.1| protein-export membrane protein SecD [Clostridium thermocellum ATCC
           27405]
          Length = 445

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 99/259 (38%), Gaps = 4/259 (1%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
              +G  +      R V   +     + +    I  +   G+   ++ L +   +   + 
Sbjct: 178 FSDEGAKKFEEATERLVGKRIAIYLDDQMISAPIVNEKISGKDRAVINLGFIDRNESIEY 237

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                   +   +      ++   + P I    +   I    ++ I + +++ + ++   
Sbjct: 238 AKELAAIIRSGALPFKLEAKDVNHISPIIGESALNISIYAGAVAIILVWLFMLLYYRVP- 296

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L A  TL+  +   +  F L G+   L  +A ++  +G SV+  V++++R+++ ++   
Sbjct: 297 GLVADITLLGQVAAIILVFVLSGMSLTLPGIAGLILTVGMSVDANVIIFERIKEELR--- 353

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
           +  + +  I+          +  ++   I+   +  +G   + SFAI +  GI+V   ++
Sbjct: 354 SGKTVQAAIELGFKRAFTAILDGNLTTLITAAVLYYFGTGAVRSFAITLGLGIIVNFITA 413

Query: 813 IFIAAPILLFIYDWRAKNA 831
           I     +L  +   R    
Sbjct: 414 IVATKIVLNALSQIRVLRK 432



 Score =  114 bits (283), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 116/427 (27%), Positives = 210/427 (49%), Gaps = 24/427 (5%)

Query: 110 NIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
                  L +   +  +                +S VL+  +        ++    II  
Sbjct: 20  TAIVFTGLKIPNTDFVIPKAYDGIRYGIDISGGVSAVLTAPDGITPTDDELDTVKGIIDT 79

Query: 170 RI------DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSK 223
           R+      D+    +   +R+       +     DP      +G TA ++F +V  +   
Sbjct: 80  RLEGKQIYDKTVTVDRVNKRVLVEIPYKKDGEYGDPYETIADIGATAMLTFREVDEDKVD 139

Query: 224 KGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFF 283
                            Y + D++ + G  +  A A  DP+T   +V + F + GA++F 
Sbjct: 140 PETGV------------YEMTDRIVLQGNDIESAVAETDPQTQYGIVRLIFSDEGAKKFE 187

Query: 284 EVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK------AQISGNFTIETAGILAAMLRA 337
           E T   +GK +A+ LD ++++AP++N+ I            I  N +IE A  LAA++R+
Sbjct: 188 EATERLVGKRIAIYLDDQMISAPIVNEKISGKDRAVINLGFIDRNESIEYAKELAAIIRS 247

Query: 338 GSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLN 397
           G+LP KL   +  ++   +G  ++     A    ++L+ LFM++ Y   GLVAD ++   
Sbjct: 248 GALPFKLEAKDVNHISPIIGESALNISIYAGAVAIILVWLFMLLYYRVPGLVADITLLGQ 307

Query: 398 VILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFS 457
           V   + +  L G +LTLP IAG++L +G++VD+N+++ ERI+EE R  ++V  ++++GF 
Sbjct: 308 VAAIILVFVLSGMSLTLPGIAGLILTVGMSVDANVIIFERIKEELRSGKTVQAAIELGFK 367

Query: 458 RAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
           RA++ I D N+T LI   VL++FG GAVR FAIT+GL I+++  TAI   + ++  + + 
Sbjct: 368 RAFTAILDGNLTTLITAAVLYYFGTGAVRSFAITLGLGIIVNFITAIVATKIVLNALSQI 427

Query: 518 KKMKSID 524
           + ++   
Sbjct: 428 RVLRKPW 434



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 11/205 (5%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK--NRISLGLDLRGGSHLVLEV-D 61
            W   +   +    +            +      +PK  + I  G+D+ GG   VL   D
Sbjct: 2   RWSSGIKFFLVLAVIAAMTAIVFTGLKIPNTDFVIPKAYDGIRYGIDISGGVSAVLTAPD 61

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQI--QNKITLSFADSR-----FKENIADK 114
                +  L      + + L+ + I   ++       ++ +     +             
Sbjct: 62  GITPTDDELDTVKGIIDTRLEGKQIYDKTVTVDRVNKRVLVEIPYKKDGEYGDPYETIAD 121

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +         +++ D          E    IVL  N+I+  ++    Q+   I + I   
Sbjct: 122 IGATAMLTFREVDEDKVDPETGVY-EMTDRIVLQGNDIESAVAETDPQTQYGIVRLIFSD 180

Query: 175 GISESTIQRLGSHRILIQLPGEQDP 199
             ++   +               D 
Sbjct: 181 EGAKKFEEATERLVGKRIAIYLDDQ 205


>gi|121582766|ref|YP_973208.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
 gi|120596028|gb|ABM39466.1| acriflavin resistance protein [Polaromonas naphthalenivorans CJ2]
          Length = 1093

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/599 (12%), Positives = 170/599 (28%), Gaps = 31/599 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            +   ++       +GLL         +  +  P  +                + L    
Sbjct: 18  TSKLTILFMLACILLGLLAV-----TLTPREENPQIVVPGAQ---------VWVTLPGAS 63

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    + +   +        +       + + F     KE    K+   + G 
Sbjct: 64  AEEVEELVIRPLEGIVKQIAGVDHTYATAMNSMGVLMVQFKVGEDKEKSLVKLYDRVLGQ 123

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L     + L+ +    ++ IV      +    +A+++   +  + ++ +   +    
Sbjct: 124 RERLPAGAGEPLIRSVDVDDVPIVTVTLASEIYDDYALKR---LADRLMEGLRSLDKVSA 180

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    +L  E DP RL+    T  ++       N +        +           
Sbjct: 181 ISVKGGRDRELRIELDPQRLQAFGVTLDQVHATLRASNVAAPLGTVVQQGQNRQVFLDGF 240

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++  + +               V       G  +           P         
Sbjct: 241 LSSAQDLKRVIVGSHAGRPIYLGDVAQVV-----DGPPQERTHLSRLAFGPADARFGKTQ 295

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      + KA  +  F           ++A  +P  + +V  RN G    +    
Sbjct: 296 QAEMPAVTLAVAKKAGSNAVFVANDVLERIDRMKAQFVPAGVELVVTRNDGEKADAAVSG 355

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                 +A L + ++    L  K  L+   ++ L + LTL    L G ++   S+  ++L
Sbjct: 356 LIEHLGIAVLAVFLVTAAFLGLKEALIVGVTVPLILALTLGAAYLFGLSINRVSLFALIL 415

Query: 423 GIGLAVDSNILVNERIREENRK--NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            +GL VD  I+V E I     +   Q          +   +    + +  ++    L   
Sbjct: 416 SLGLLVDGAIVVIENIHRNYSRLGKQDKRLVTVQATNEIGNPTNLATLAVMLVFGSLLVV 475

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL----SRFFL 533
               G      A  + +++  S+  A ++V       ++  +   ++ +       RF+ 
Sbjct: 476 SGMPGQYFYPVAFNVPVAMAASLLVAYAVVPWAANRWLKPGEGHDLEDHDTQDRLHRFYR 535

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                 +   R+R+    ++ L    S+       +            GV         
Sbjct: 536 HVMSPLVDRSRSRWLAFLLAGLAIAVSLLQPAWQFVRPSGLGGPQSWFGVELAMMPKDD 594



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 34/159 (21%), Positives = 70/159 (44%), Gaps = 2/159 (1%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           + I+ +A+ +          AL    T+ L +  TLG   LFG+  N  ++ A++  +G 
Sbjct: 360 LGIAVLAVFLVTAAFLGLKEALIVGVTVPLILALTLGAAYLFGLSINRVSLFALILSLGL 419

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+  +VV + + +N          R +  ++ NE    +   ++A  +    + V  G 
Sbjct: 420 LVDGAIVVIENIHRNYSRLGK-QDKRLVTVQATNEIGNPTNLATLAVMLVFGSLLVVSGM 478

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               F  P+AF + VA ++S+ +A  ++ +  +   K  
Sbjct: 479 PGQYF-YPVAFNVPVAMAASLLVAYAVVPWAANRWLKPG 516



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 63/155 (40%), Gaps = 12/155 (7%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            R  +  + ++   + + +   ++ +   L A+  + L +        L G  F  T++  
Sbjct: 925  RDMLGALGLALTFIFLVLVAYYRSFSLPLVAMAAIPLGLAGIFPGHWLMGPPFTATSMIG 984

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++ L G  V + +++ D +    +     +  R+ I ++    L   + T++A  +    
Sbjct: 985  IIALAGVVVRNSLLIIDFVLDYRRQ---GMDLREAILEAGAVRLRPILLTALAIVLGSAV 1041

Query: 786  MA---VWGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            M    V+GG      AI + FG + +   ++ +  
Sbjct: 1042 MLSDPVFGG-----LAISLIFGTLASTVLTLIVVP 1071


>gi|172037857|ref|YP_001804358.1| acriflavin resistance protein [Cyanothece sp. ATCC 51142]
 gi|171699311|gb|ACB52292.1| acriflavin resistance protein [Cyanothece sp. ATCC 51142]
          Length = 1065

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/680 (11%), Positives = 175/680 (25%), Gaps = 43/680 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  + ++L  ++   GLL               P                         +
Sbjct: 34  NTIFAILLTLLMVVGGLL-----GYFSMTKQSNPDIDIAVAT---------VTTTWPGAD 79

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +   + ++       +     + I + F      +   +++   +   
Sbjct: 80  PQTIEQQVTSEIETEITSVENVKEVQSASYAGFSVINVEFTSQADPDEAIEELRQGVAQA 139

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L  + ++ ++   +  +  I+        +    I Q+ E      D +       +
Sbjct: 140 EPELPEEAEQPVVEQISVNDAPILTLALFG-DIDQTVISQTAE---DIQDNLEQVAGVSE 195

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     +  + +P RL  L  +   ++      N            +         
Sbjct: 196 VNLGGAREEVINVQMNPFRLATLGISPTTVATEIRNANRDVPLSEIESDLIGSQVRFYAR 255

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                 +  + +          +    V    D+   R F     +              
Sbjct: 256 FRSVEALQDLPIARLEGRVVRLSELAEVRRELDQEETRAFISTQGEA------------Y 303

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +      G+  I     +  A                  +               
Sbjct: 304 QPVVSVGIKKVPGQDSIEVIERVLEAMEQIEQNPNLWPRGMEYQIIADESDIIWEQLGNL 363

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                     V +VLF+ +   +  L+A  SI L  +  LA+L L G TL    + G+VL
Sbjct: 364 FTNALQAMAAVFVVLFIAL-SWREALIAGLSIPLTFLGALAVLWLTGQTLNNMVLIGMVL 422

Query: 423 GIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
            +G+ VD  ILV E + E    +  S   +            F   +T ++A   L    
Sbjct: 423 ALGILVDVFILVMEGMHEFIFAEGLSFNQAALKTVKTYAPPAFAGQLTTILALFPLLAIS 482

Query: 482 GGAVRGF-------AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           G   +          I + LS +I++   I + R ++  +   +K  +ID    +     
Sbjct: 483 GTLGKFIELLPYTAIICLVLSFVIAILIDIPLSRYLLGNMRSVEKKSTIDRLSQAASARW 542

Query: 535 PDCIAIQFMRARFWGVGISILFS----ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            +      +R +       +                    +    +    + V       
Sbjct: 543 MNWSLNYTVRNKKTAWAWVLGTIALFFCFMTLFSQISVEFFPRGDQRNFSVNVELPPTTT 602

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L V +   + L          D    +  +          Q      +       +P + 
Sbjct: 603 LDVSQEVADDLGEILREKDYLDSVIKYTGQRSNLVASGELQPTQGSYLVGFSGTFLPENQ 662

Query: 651 IQNTEIVGPKISRELIRKGI 670
            +          R  ++K +
Sbjct: 663 RERLSFEYLDDLRNELQKAV 682



 Score = 80.1 bits (195), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 83/247 (33%), Gaps = 7/247 (2%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 +  V+ +      +   +  +                ++     +L  ++ K+ E
Sbjct: 821  FTSNPEEEVISAGAVIEAVQAEAPLSITRRGGQRTVTVLAKNENRTTGEILADLQPKLQE 880

Query: 645  IVPLSTIQNTEIVG--PKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLI 701
            I            G   +   E        + ++   +   + ++   +      + T+ 
Sbjct: 881  IQESWPQGYDYTFGGETEDQAETFGSAGQALALAIFLVFAVLVLQLGSFRQPFIILLTIP 940

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
              +  T+G F L  I F+ TA   ++ L+G  VND +V+ D M    +        R   
Sbjct: 941  FALIGTVGGFFLADIAFSFTAFIGIIALVGIVVNDAIVMVDTMNSYQQEGIK---LRLAA 997

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
             K + + L   + TS+   I ++P+A+            + FG+V A   ++ +   + L
Sbjct: 998  AKGVADRLRPVLTTSITTIIGLIPLALS-DPTWMPLCSAIIFGLVAATVIALVVIPCLYL 1056

Query: 822  FIYDWRA 828
                   
Sbjct: 1057 LFTPRTQ 1063



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/247 (12%), Positives = 82/247 (33%), Gaps = 10/247 (4%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D    R+ + +         +   +K             +     +E         +   
Sbjct: 288 DQEETRAFISTQGEAYQPVVSVGIKKVPGQDSIEVIERVLEAMEQIEQNPNLWPRGMEYQ 347

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
            I +   +  +    L    +  +     A+ + ++I   W  AL A  ++ L     L 
Sbjct: 348 IIADESDIIWEQLGNLFTNALQAM----AAVFVVLFIALSWREALIAGLSIPLTFLGALA 403

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              L G   N   +  ++  +G  V+  ++V + M + +  +   +SF     K++    
Sbjct: 404 VLWLTGQTLNNMVLIGMVLALGILVDVFILVMEGMHEFI--FAEGLSFNQAALKTVKTYA 461

Query: 770 GRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPIL-LFIYD 825
             +    +   +++ P+    G++   I          +V++   +I I  P+    + +
Sbjct: 462 PPAFAGQLTTILALFPLLAISGTLGKFIELLPYTAIICLVLSFVIAILIDIPLSRYLLGN 521

Query: 826 WRAKNAR 832
            R+   +
Sbjct: 522 MRSVEKK 528


>gi|148557543|ref|YP_001265125.1| acriflavin resistance protein [Sphingomonas wittichii RW1]
 gi|148502733|gb|ABQ70987.1| acriflavin resistance protein [Sphingomonas wittichii RW1]
          Length = 1064

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/524 (13%), Positives = 158/524 (30%), Gaps = 36/524 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +      +++  +I   G L AL     ++ +D FP+      I++     G       +
Sbjct: 9   LHRPLTFIVMAILIAIGGTLAAL-----RTPVDIFPNIRIP-VIAVAWQYAG-------L 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D  +  +  Y   L + +                + + F           +VT   Q
Sbjct: 56  PPQDMADRVIGPYERVLTTTVNDIDHIESQSLLGVGIVKIYFQPGADIRTATAQVTSISQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  ++       L++      + I+    +   +     +       Q   Q+      
Sbjct: 116 TVLRQMPPGTTPPLILNYNASTVPILQLALSGKGLSEQ--QLFDIGQNQIRPQLVTVPGL 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S     Q+  + +P  L+    +   +       N         +          
Sbjct: 174 AMPFPSGGKQRQVQIDLNPLALQSKGLSAQDVGAAIAAQNQINPAGFIKI---------- 223

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N  P + + + ++    +     +      +    A   + 
Sbjct: 224 ----------GETQYSVRLNNAPASIEALNNLPVKVVNGATIYMRDVAYVRDGSAPQQNI 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +                S    +E        + A        +           +  
Sbjct: 274 VHVEGSRSALLTILKNGATSTLAIVEGVKDKLPSIAATLPDSLRILPIGDQSLFVKAAVQ 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 AI A L  +++ + +   +  ++   SI L ++  +A L+  G TL + ++ G+
Sbjct: 334 GVIHEGAIAAALTSLMILLFLGSWRSTVIIALSIPLAILGAIAALAAFGQTLNVMTLGGL 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   +  E I     + ++V  ++  G ++  +  F S +   I  V +FF 
Sbjct: 394 ALAVGILVDDATVTIENINWHLEQGKTVIEAILAGAAQIVTPAFVSLLCICIVFVPMFFL 453

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
            G A   F + M L+++ +M  +  + R ++  +  Y       
Sbjct: 454 PGVAGFLF-VPMALAVVFAMIASFVLSRTLVPTMAMYLLKAHRP 496



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 59/159 (37%), Gaps = 7/159 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ + + + + I + F  W      IT L   +   +      G   ++ A+   +  +G
Sbjct: 895  LLGAIVLIYLLIVVNFQSWVDPFVIITALPAALAGIVWMLFTTGTTLSVPALTGAIMCMG 954

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ +       +    I+  +       + T++A  I + PMA    
Sbjct: 955  VATANSILVVSFARERLAEL--GDATMAAIEAGMVR-FRPVLMTALAMIIGMAPMAFGLG 1011

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             GG         +  G++ A  +++F    +    +  R
Sbjct: 1012 EGGEQNAPLGRAVIGGLICATVATLFFVPTVFALAHRKR 1050



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 7/153 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +  +  +++I +     W   +    ++ L I   +   A FG   N+  +  +   +G
Sbjct: 340 AIAAALTSLMI-LLFLGSWRSTVIIALSIPLAILGAIAALAAFGQTLNVMTLGGLALAVG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +           +  + I     + +  +  + +   I  +PM    G
Sbjct: 399 ILVDDATVTIENIN---WHLEQGKTVIEAILAGAAQIVTPAFVSLLCICIVFVPMFFLPG 455

Query: 792 SVIGSFAIP-MAFGIVVAASSSIFIAAPILLFI 823
             +  F    MA  +V A  +S  ++  ++  +
Sbjct: 456 --VAGFLFVPMALAVVFAMIASFVLSRTLVPTM 486


>gi|19704610|ref|NP_604172.1| acriflavin resistance protein B [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714908|gb|AAL95471.1| Acriflavin resistance protein B [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1020

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/618 (11%), Positives = 169/618 (27%), Gaps = 44/618 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++      IGLL            +  P+                        
Sbjct: 9   RRPVATTMVMVSFIFIGLLAMF-----SMKKELIPNIKIPVVT---------ITTTWTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +     +  S +              + + ++F      +    ++   +  
Sbjct: 55  VSENVETQVTKKIKDSLSNVDAIDKIQTVSAYGVSNVVVNFDYGVDTDEKVTQIQREVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    L+        ++      I          +  I  Q   ++       
Sbjct: 115 IANNLPNDANTPLVRKIEAAGGNMTAI---IAFNADSKTALTTFIKEQLKPRLESLPGIG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         QL  + D  +L     +  ++         +                   
Sbjct: 172 QVDIFGNPDKQLQIQVDSDKLASYNLSPMELYNIVRTSVATYPIGKLS------------ 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G          +        +I     G          +I        +  
Sbjct: 220 --------TGNKDMIIRFMGELDYIDQYKNILISSDG-NTLRLKDVADIVLTTEDADNVG 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +    +          A  +   ++          +E         S S 
Sbjct: 271 YLNGKESVVVLLQKSSDGDTITLNNAAFKVIEEMKPYMPAGTEYSIEMDASENINSSISN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      L  I+LF+ +   +  ++   ++ + +I T A LS+ G TL L S+ G+ 
Sbjct: 331 VSSSAIQGLVLATIILFIFLKSFRTTILISLALPVAIIFTFAFLSMRGTTLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSV-FCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +G+G+  D++++V + I     +  S    + +        ++  S +T ++  + + F 
Sbjct: 391 IGVGMLTDNSVVVVDNIYRHITELNSPVMEASENATEEVTFSVIASALTTIVVFLPILFI 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R  +  +  S L ++  AI+++  +    +  K MKS D     +       
Sbjct: 451 PGLAREFFRDMSYAIIFSNLAAIIVAITMIPMLASRFLDRKSMKSEDGRLFKKIKAFYLK 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLF--THGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           +  + +  +   V I ++    SI +              +G   L        DL+   
Sbjct: 511 VINKAISHKGLTVLIMVVLFFFSIFVGPKLLKFEFMPKQDEGKYSLTAELQNGTDLNKAE 570

Query: 596 SNLESLQIGDISFQNFDG 613
              + L+    S  +   
Sbjct: 571 RIAKELEEIIKSDPHTQS 588



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 76/205 (37%), Gaps = 8/205 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WI 686
           + A  +V+E +K  +      S   +           +    I G++++ I + I++   
Sbjct: 294 NNAAFKVIEEMKPYMPAGTEYSIEMDASENINSSISNVSSSAIQGLVLATIILFIFLKSF 353

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           R     +L         I  T  F ++ G   NL ++  +   +G   ++ VVV D +  
Sbjct: 354 RTTILISLALPVA----IIFTFAFLSMRGTTLNLISLMGLSIGVGMLTDNSVVVVDNI-- 407

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
              +   +    +  + +  E     + +++   +  LP+    G     F   M++ I+
Sbjct: 408 YRHITELNSPVMEASENATEEVTFSVIASALTTIVVFLPILFIPGLA-REFFRDMSYAII 466

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
            +  ++I +A  ++  +        
Sbjct: 467 FSNLAAIIVAITMIPMLASRFLDRK 491



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 86/244 (35%), Gaps = 7/244 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D   V+ +  +             +              V    +   + ++   + P S
Sbjct: 762  DNKFVKLSDVATLQYAEGTSEIRKKNGIYTVTISGNDGGVGLGAIQSKIIEEFNNLNPPS 821

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
            T+  +     +  ++ + +    + IS   +   +  +F+ +   +  I ++ L +   +
Sbjct: 822  TVSYSWGGQTENMQKTMSQLSFALSISIFLIYALLASQFESFIMPIIIIGSIPLALIGVI 881

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                +     ++  +  V+ L G  VN+ +V+ D ++    + T        I  S    
Sbjct: 882  WGLVILRQPIDIMVMIGVILLAGVVVNNAIVLIDFIK---TMRTRGYDKDYSIIYSCETR 938

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + T+M     ++PMA+    G       AI + FG+  +   ++ +   +   +  
Sbjct: 939  LRPILMTTMTTVFGMIPMALGLGEGSEFYRGMAITVIFGLSFSTILTLVLIPILYSIVDS 998

Query: 826  WRAK 829
            + +K
Sbjct: 999  FTSK 1002


>gi|254248974|ref|ZP_04942294.1| hypothetical protein BCPG_03829 [Burkholderia cenocepacia PC184]
 gi|124875475|gb|EAY65465.1| hypothetical protein BCPG_03829 [Burkholderia cenocepacia PC184]
          Length = 1070

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/601 (10%), Positives = 149/601 (24%), Gaps = 62/601 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L         + +      +  +D  P                   + +      
Sbjct: 13  RWLVMLAIAAVAALGVFS----YQRLPIDAVPDITN-------------VQVQINTSAPG 55

Query: 65  FV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +    + + + L          R   +++T+ F D          V   +Q
Sbjct: 56  YSPLEAEQRITYPVETVMAGLPGLEQTRSISRYGLSQVTVIFKDGTDIYFARQLVNERIQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV------ISHAIEQSMEIIRQRIDQI 174
               KL       +  T+T      + +                A +           Q+
Sbjct: 116 EAKDKLPAGIAPAMGPTSTGLGEIYLWTVEADANARKPDGTRYTAADLRELQDWVVRPQL 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +       + +     +P++L     T A +       N++        R  +
Sbjct: 176 RNVRGVTEVNSIGGYVKEYRVAPNPAKLMSYGLTLADVVRALERNNDNVGAGYIEKRGEQ 235

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                        +I                     +I    +G           +    
Sbjct: 236 YLVRVPGQARTVDDI--------------------ANIVLTNVGGVPVRMKDVGVVDIGR 275

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          I        
Sbjct: 276 ELRTGAATSNGEEVVLGTVFMLMGENSRTVSKAVAAKMEDVNRTLPAGVRAIPVYDRTVL 335

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ VLF+ +   +  L+    I L++++T   +     +  L
Sbjct: 336 VEKAVATVKKNLLEGAVLVIAVLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANL 395

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIF 464
            S+  +  GI   VD  +++ E         QS           F  +      A   + 
Sbjct: 396 MSLGALDFGII--VDGAVVIVENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALI 453

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +  ++  + +F      G      AIT+ +++  +M   ++ + A +   I  +  +
Sbjct: 454 FGQLIIMVVYLPIFALTGVEGKMFHPMAITVVMALAAAMVLTVTFIPAAVALFIGERVEE 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +A    R     +G   +  +                 +G + +
Sbjct: 514 KENRLMGWARRAYEPVLAAFMTRPARVMIGAGAIVLVTLGLATRLGSEFIPSLNEGDLAV 573

Query: 582 G 582
            
Sbjct: 574 S 574



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 82/236 (34%), Gaps = 9/236 (3%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V L+ + +   +     IS ++          ++ +   S       ++ +        
Sbjct: 810  YVPLAELATIDVAPGPNQISREDGKRRVVVSANVRGRDVGSFVADAREQLQQDVRVPAGY 869

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +           S  L  K +V + +  + +L+++         L   T +   ++  
Sbjct: 870  WVSWGGQFEQLQSASERL--KLVVPLALFMVFVLLFVMFN-NVKDGLLVFTGIPFALSGG 926

Query: 708  LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
            +    L GI  ++TA    + L G +V + +V+   +R    L    +     +      
Sbjct: 927  VVSLWLRGIPLSITAAVGFIALSGVAVLNGLVMISFIR---NLRDEGMPLDAAVHDGALT 983

Query: 768  TLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
             L   + T++ A +  LPMA     G  V    A  +  GI+ + + ++ +   + 
Sbjct: 984  RLRPVLMTALVASLGFLPMAFATGTGAEVQRPLATVVIGGILSSTALTLLVLPVLY 1039



 Score = 40.4 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + +          AL     + L +  T        +  NL ++ A+    G 
Sbjct: 348 LEGAVLVIAVLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS-------VYTSMAAFISVLP 785
            V+  VV+ +   + +    ++       D+   E  G S       ++  +   +  LP
Sbjct: 406 IVDGAVVIVENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALIFGQLIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    AI +   +  A   ++ FI A + LFI +    K  R+
Sbjct: 466 IFALTGVEGKMFHPMAITVVMALAAAMVLTVTFIPAAVALFIGERVEEKENRL 518


>gi|189461229|ref|ZP_03010014.1| hypothetical protein BACCOP_01876 [Bacteroides coprocola DSM 17136]
 gi|189432046|gb|EDV01031.1| hypothetical protein BACCOP_01876 [Bacteroides coprocola DSM 17136]
          Length = 1026

 Score =  123 bits (308), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/697 (10%), Positives = 188/697 (26%), Gaps = 49/697 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M        +  ++      I          +   P                   + ++V
Sbjct: 1   MVRFLIKRPIAVLMAFTACFIVGLVTYFSLPVSLLPDIDIP-------------QITVQV 47

Query: 61  DEDDFVNGFLQMY-SDELRSF---LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
             ++     L+      +R     +          R     I LSF      +    +V 
Sbjct: 48  TGENSSARELENTMVAPVRRQLMQVSGLSEMRSETRDGSGIIRLSFDFGTDTDLAFIEVN 107

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHA-------IEQSMEIIRQ 169
             +    + L  D  +   +  +  +I +      +   + +        +E        
Sbjct: 108 EKIDAAMNSLPRDAVRPKAIKASATDIPVFYLNMTLKDEVPYQETDGNAFLEMCTLAENV 167

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
              +I           +      L    D  ++  L    + +       N      +  
Sbjct: 168 VKRRIEQLPQVAMADMTGVPQKMLRIVPDMGKMESLGMGISDLEGILSSNNVEPGSMLVR 227

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
             +   +     L+    ++  I+                                   +
Sbjct: 228 DGYYEYNIRIASLLRTPEDVENIY---------------------FNHNGLVMQLKDICD 266

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +       +   +             + + + +   +               I+   +  
Sbjct: 267 VQMVTRNEMGRSLAGGKRAVTLAIIKQGEENMDNLRKELKETTDYFTKIYPDIEF-SITR 325

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   + S  +    +    + IV F  +   +  L+   ++  +VI+T +L  +  
Sbjct: 326 NQTELLDYTISNLQQNFTLGFLFIFIVAFFFIGDVRSPLIIGITMITSVIITFSLFYICK 385

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            +L + S++G++L +G+ +D+ I+V E + +   K  S+  +   G S   + +  S++T
Sbjct: 386 ISLNVISLSGMILAVGMMIDNAIIVTENVSQYREKGYSLKRAAVAGTSEMITPMLSSSLT 445

Query: 470 ALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +   V L F     G      A ++   +L+S F  I ++  + +   R    K     
Sbjct: 446 TVAVFVPLVFMSGIAGAIFMDEAFSITSGLLVSYFAGIMLLPVLYVLFYRMGIRKHNWFT 505

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
              +  L  + +   +     W      +    +I  L    L + +  K  +       
Sbjct: 506 ASFKNLLKNEWLVRFYDAGIEWVFAHKKMTMAFAIVSLPLCVLMFMLIDKERMPEIDQNE 565

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V +    +         ++      +        Y            E+   +     
Sbjct: 566 TVVSIEWNENIHVDENNRRVNAILAMTDSLVEKHTAYVGMQDYLLGTENELSAAEAELYF 625

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
             +      ++   I +E+ +K     +  +  + I+
Sbjct: 626 RTAEPSGISVLTELIGQEVRKKYPAATVTFSPPVTIF 662



 Score = 86.3 bits (211), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 98/251 (39%), Gaps = 8/251 (3%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            +  D S  R+ +   +   I       E       +Y P +      V +++++    + 
Sbjct: 780  KTTDGSSERNYVPLREFVRIVPDEDLKEITAGRNGEYIPVNFYNVDNVPKVMEEVRNVVG 839

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
              S    +       +++++ +  V ++IS + M   +  +F+ +   L  +  + +DI 
Sbjct: 840  SDSRWDVSFGGSFFSNKKMMGELTVILLISVLLMYFILCAQFESFLQPLIVLAEIPMDIA 899

Query: 706  KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
              L      G   NL +   ++   G  VND ++  D + +   L    +   D I  + 
Sbjct: 900  FGLVLLWATGHTMNLMSAIGIIVSCGIVVNDSILKLDSINE---LRKEGMPLLDAIHTAG 956

Query: 766  NETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +  L   + T++    +++P+      G  +    +I M   ++V    S+F+  P++ +
Sbjct: 957  HRRLRAIIMTTLTTVFAMVPLLFTSDLGSEMQRPLSIAMIGTMMVGLIVSLFVI-PLIYW 1015

Query: 823  IYDWRAKNARI 833
                + +  +I
Sbjct: 1016 FIYRKHETQKI 1026



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 55/145 (37%), Gaps = 6/145 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    T+I  +  T   F +  I  N+ +++ ++  +G  +++ ++V + +    
Sbjct: 359 DVRSPLIIGITMITSVIITFSLFYICKISLNVISLSGMILAVGMMIDNAIIVTENV---S 415

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGI 805
           +      S +       +E +   + +S+      +P+    G     F   A  +  G+
Sbjct: 416 QYREKGYSLKRAAVAGTSEMITPMLSSSLTTVAVFVPLVFMSGIAGAIFMDEAFSITSGL 475

Query: 806 VVAASSSIFIAAPILLFIYDWRAKN 830
           +V+  + I +   + +  Y    + 
Sbjct: 476 LVSYFAGIMLLPVLYVLFYRMGIRK 500


>gi|205355790|ref|ZP_03222559.1| putative integral membrane component of efflux system
           [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346224|gb|EDZ32858.1| putative integral membrane component of efflux system
           [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 1005

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/542 (11%), Positives = 152/542 (28%), Gaps = 50/542 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++ +  +   GL+ A    +        P     ++I+      G  + V     
Sbjct: 8   RPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIKITSKIN------GDLNFV----- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S +        +     +   + F   +  E  A+ V   +  +
Sbjct: 57  ----ESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAANDVRDKIGTL 112

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L   P+   + + +   IS+ L            ++   EI  +    +   E   +
Sbjct: 113 --SLPSKPEIEKISSDSGSAISLFLY-------SKDKLQLMREINDKIKPFLQRVEGVGK 163

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  E  P+ LR+       ++      N  +                 + 
Sbjct: 164 IEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYIIKGYFE 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  E+S + +                            F     NI           +
Sbjct: 224 ATNLEELSNLRIKT------------------------GVFLSDIANISSLYEDEKQSAL 259

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    I+       +L           +            S  
Sbjct: 260 YEGKEGVLLELGKITNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQV 319

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L L+++F+ +      L+A  +I  ++I T  ++ LLG  L   +   + L
Sbjct: 320 IFDMVLGIFLTLVIVFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTL 379

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLD--MGFSRAYSTIFDSNITALIATVVLFFF 480
            IG+ +D  I+V E I ++ +    +  +         +  +I    +   I    +   
Sbjct: 380 SIGIFIDDAIVVIENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSI 439

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G       I++   I+IS   ++ ++ ++    +  K+ K  +        +      +
Sbjct: 440 SGLFFNALGISVASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENL 499

Query: 541 QF 542
            +
Sbjct: 500 LY 501



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 7/200 (3%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                      V   +     +I    +I         I + L +     V+   + ++I
Sbjct: 274 TNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVI 333

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                      L A   +   I  T     L G + N     A+   IG  ++D +VV  
Sbjct: 334 VFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI- 392

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +N+     +          INE     +  S+      +P++      G    +  I
Sbjct: 393 ---ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGI 449

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +A GIV++   S+F+   I
Sbjct: 450 SVASGIVISFLVSVFLIPSI 469



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 93/256 (36%), Gaps = 9/256 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +++  S++                KN  V++     D         ++    
Sbjct: 747 ISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQKLLLDNMD 806

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             +    ++         +  E ++   + V ++ + + + +   ++ +   L  + T+ 
Sbjct: 807 KILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFILPLIIMITMP 866

Query: 702 LDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           L     ++G F + G  F+L  + A++ L G    + +++ D      K     +     
Sbjct: 867 LAFGGASIGLF-ITGHNFSLFVLIAIILLFGMVGKNAILLVDVAN---KKCHEGLDPDKA 922

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  +    L   + T+ A   ++LP+A+    G       AI + FG++ +   ++ +  
Sbjct: 923 LLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLISSTLLTLLVVP 982

Query: 818 PILLFIYDWRAKNARI 833
            +  F +   +K  +I
Sbjct: 983 ALFKFCFKLDSKLRKI 998


>gi|187928729|ref|YP_001899216.1| CzcA family heavy metal efflux pump [Ralstonia pickettii 12J]
 gi|241114282|ref|YP_002973757.1| heavy metal efflux pump, CzcA family [Ralstonia pickettii 12D]
 gi|309783395|ref|ZP_07678101.1| heavy metal RND efflux transporter, CzcA family [Ralstonia sp.
           5_7_47FAA]
 gi|187725619|gb|ACD26784.1| heavy metal efflux pump, CzcA family [Ralstonia pickettii 12J]
 gi|240868855|gb|ACS66513.1| heavy metal efflux pump, CzcA family [Ralstonia pickettii 12D]
 gi|308917794|gb|EFP63485.1| heavy metal RND efflux transporter, CzcA family [Ralstonia sp.
           5_7_47FAA]
          Length = 1055

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/552 (12%), Positives = 142/552 (25%), Gaps = 50/552 (9%)

Query: 3   NNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            N +LV+L   M+   GL  A       + LD  P       I                 
Sbjct: 11  RNRFLVLLATVMLTAWGLWAA-----RSTPLDALPDLSDVQVI---------IRTPFPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTDLYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    K  L    T                     +           ++    +  
Sbjct: 117 VQSRLPAAAKPALGPDATGVGWIYEY-ALVDKTGRHDLAQLRALQDWFLRFELKALPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q      P RLR    T AK+                          NQ 
Sbjct: 176 EVASVGGMVKQFQVVLQPDRLRAFNLTQAKVLAALK-------------------GANQE 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +E+         + +                            +     +     
Sbjct: 217 TGGSVLELGEAEYMVRASGYLKTLDDFRQIPLMTNDAGIAVHLGDVATVQLGPEMRRGIA 276

Query: 302 VLTAPV-INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L     +   +   ++  +   TIE      A LR         +      G    +  
Sbjct: 277 ELNGQGEVAGGVVILRSGKNALETIEAVKAKLATLRTSLPEGVEIVPVYDRSGLIKRAVD 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V +V  + + + +  LVA  S+ L V+    ++   G    + S+ GI
Sbjct: 337 NLTHKLIEEFIVVAVVCLVFLFHLRSALVAIVSLPLGVLAAFLVMRYQGVNANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNIT 469
            + +G  VD+ +++ E   +                   +  +    +     +F S + 
Sbjct: 397 AIAVGAMVDAAVVMIENAHKHLEHWLEDNPGRELTGHERWNVIGESAAEVGPALFFSLLI 456

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             ++ + +F      G      A T   S+  +   ++++V  +M ++IR +        
Sbjct: 457 ITLSFIPVFTLEAQEGRLFSPLAFTKTYSMAAAAGLSVTLVPVLMGYLIRGRIPSEQSNP 516

Query: 527 PLSRFFLIPDCI 538
                  +   +
Sbjct: 517 LSRWLIRLYQPM 528



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 87/259 (33%), Gaps = 19/259 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + LS V           +  +N        V ++ +   S  +     + K
Sbjct: 787  PIVTDRGQQIVLSDVADIRVVQGPPMLRSENARLSGWIYVDIRGRDLRSAVKDMQAAVTK 846

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
                      +         + S +L     V V  + + + + +++ F +   AL  + 
Sbjct: 847  AVPMPAGYALSWSGQFEYLERASAKLQ----VVVPFTLLIIFVLLYLVFGRIDEALLIMG 902

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY--------DRMRKNMKL 750
            TL L +        L G   ++  V   + L G +    V++         +R ++N   
Sbjct: 903  TLPLALIGGFWLLYLLGYNLSVAGVVGFIALAGVAAEFGVIMLLYLKHAWTER-QEN--G 959

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVV 807
             T++ +  + I +     +     T       +LP+      G  V+   A PM  G++ 
Sbjct: 960  QTSTQALLEAIQEGAVLRVRPKAMTVAVILAGLLPIMWSDGTGSEVMQRIAAPMVGGMIT 1019

Query: 808  AASSSIFIAAPILLFIYDW 826
            A   S+F+   + L +   
Sbjct: 1020 APLLSLFVVPAVYLLLRRR 1038



 Score = 48.5 bits (113), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/229 (16%), Positives = 80/229 (34%), Gaps = 14/229 (6%)

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G    L   +       A    L  ++  + E V +  + +   +  +    L  K 
Sbjct: 283 EVAGGVVILRSGKNALETIEAVKAKLATLRTSLPEGVEIVPVYDRSGLIKRAVDNLTHKL 342

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           I   I+ A+  L+++   F    AL AI +L L +          G+  N+ ++  +   
Sbjct: 343 IEEFIVVAVVCLVFL---FHLRSALVAIVSLPLGVLAAFLVMRYQGVNANIMSLGGIAIA 399

Query: 730 IGYSVNDKVVVYDRMR--------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
           +G  V+  VV+ +            N     T     ++I +S  E      ++ +   +
Sbjct: 400 VGAMVDAAVVMIENAHKHLEHWLEDNPGRELTGHERWNVIGESAAEVGPALFFSLLIITL 459

Query: 782 SVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           S +P+          F   A    + +  AA  S+ +   ++ ++   R
Sbjct: 460 SFIPVFTLEAQEGRLFSPLAFTKTYSMAAAAGLSVTLVPVLMGYLIRGR 508


>gi|237753333|ref|ZP_04583813.1| rnd pump protein [Helicobacter winghamensis ATCC BAA-430]
 gi|229375600|gb|EEO25691.1| rnd pump protein [Helicobacter winghamensis ATCC BAA-430]
          Length = 1019

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 157/542 (28%), Gaps = 38/542 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + +++  + L+    + L +  +  +P+                   V      + V G 
Sbjct: 10  ISALMFVLALVFFGSDALRRLSVSLYPNVDVPVIT---------ITTVYPGANPEIVEGK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E  S ++       +     + + + F   +     A+ V   +  +      +
Sbjct: 61  VTDRIEEAVSGIESLKKITSTSADSVSIVVVEFELEKDINIAANDVRDKISTI--SFGSE 118

Query: 130 PKKNLLVTTTEKEISIV---LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
            K  ++         IV   ++     +     +E ++         I   +   +    
Sbjct: 119 VKSPIVEKFDVGGAPIVSLFITPKKPIKNTQELLELNLHTDLNVKPLIQRIKGVGKVNLV 178

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +  ++    +PS L +   + + ++      N    G              +      
Sbjct: 179 GYLEREIKISPNPSALNKYNLSFSDIARAINAQNIEIDGGRLINEKREWKILTKADATSV 238

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            ++  I +                       G +        +  K      +       
Sbjct: 239 QDLGNILIAQ---------------------GIKLSDIAVILDSTKEQRSFSNLATPQGS 277

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
                +   K   +    I  +                  +          + +  +   
Sbjct: 278 HSGILLEVQKITGANEIEIANSLKAILPELQAMDEKYELHLVRDTTNYIKDTIAAVEFDL 337

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            + A L + V+F+ +   +   +A  SI  +V+   AL+   G TL L ++  I L IG+
Sbjct: 338 ILGAFLAVFVVFVFLRNWRITFIASLSIPTSVMGVFALMYAFGMTLNLATMIAITLAIGI 397

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV---LFFFGGG 483
            +D  I+V E I ++    +    +   G       +   +   L   +    +    G 
Sbjct: 398 IIDDAIVVIENIYKKIENGEERKKAAYDGVKEIGFALVAISCMLLAVFIPIANMSGVTGR 457

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
               F IT+  +I+IS    I+ +  +   I+  + + S       ++F   +   +  +
Sbjct: 458 FFTSFGITLAGAIVISYLVVITFIPMLSARIVDTQAVNSRFYLWSEKYFKALEQFYLSVL 517

Query: 544 RA 545
             
Sbjct: 518 GW 519



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 63/167 (37%), Gaps = 7/167 (4%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +V ++ +   +   +   ++     +  + TL L  T       L G   +L ++  ++ 
Sbjct: 853  VVAMVSALFLIYFILASLYESLLEPVIIMITLPLSFTGAFLALFLSGASLSLFSIMGLML 912

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L+G    +  ++ D   +        +   + I  +    L   + T++A    +LP+A+
Sbjct: 913  LMGLVGKNATLIIDVANE---KREEGMDIDNAILHAGVLRLRPILMTTIAMVFGMLPLAL 969

Query: 789  WGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             GG    +     I M  G++VA   S+ I       +     +  +
Sbjct: 970  AGGAGSGIKSPMGIAMIGGLLVAMVLSLLIVPAFYKILAPLDTRLRK 1016


>gi|218531008|ref|YP_002421824.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
 gi|218523311|gb|ACK83896.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
          Length = 1066

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 79/645 (12%), Positives = 185/645 (28%), Gaps = 29/645 (4%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVN 67
           +  +  C+GL++A    L +  +D  P                   ++ E +      V 
Sbjct: 22  VLVLALCLGLVLAGGLALTRLPVDVLPDLNRPT-----------VTVMTEAEGYAPPEVE 70

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   + L              + +T+ F            V   L  V S+L 
Sbjct: 71  QLVTYPIETRMNGLPGVTRVRSVSSAGLSIVTVEFGWDTDLYRDRQFVAERLALVRSELP 130

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 +    +     ++++  +         E +  I+R    ++       Q +   
Sbjct: 131 TGVVPQMGPVASIMGGILLVAVTSETSDPMQVRETADFILR---PRLLSIPGVAQVIPIG 187

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + Q     +P+ +R L  +   +         +  G             N        
Sbjct: 188 GEVRQFRVSPNPAAMRALGVSNEALVTALSGFGTNAGGGFADANAREILIRNIGRTLSLE 247

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           ++  + +             P       E               +P     DG     P 
Sbjct: 248 DLRNLVIPTGPQGATAAADLPGTGNPAIEGRVYLRQIAEVAFAARP--KRGDGGYRGEPA 305

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           +  ++       +   T +    L  +       +    +  R       S +  +    
Sbjct: 306 VILSVEKQPGIDTVRLTRDVEAALKEVAPTLPKGMDAQKILFRQADFIETSLANVERVLM 365

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
               +V +VLF  ++  +  L++  +I ++++ T  +  LLG ++   ++ G+ + IG  
Sbjct: 366 EAVAVVAVVLFAFLMNARTTLISLTAIPVSILATALVFWLLGFSINTMTLGGLAIAIGEL 425

Query: 428 VDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           VD  ++  E I    R+N      +S+F  +    S   S I  +    ++  V LF   
Sbjct: 426 VDDAVVDVENIFRRLRENRAEGSPRSLFDVVVAASSEVRSGIVYATAIIVLVFVPLFALS 485

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI--IRYKKMKSIDINPLSRFFLIPD 536
              G           ++IL S+  ++++   +  ++        +   +           
Sbjct: 486 GIEGRLFAPLGQAYIVAILASLLVSVTLTPVLASWLLPGMKSLTEREPLLVRRLKAGNAA 545

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            + +     R    GI++      I   +          +G + + V     + L+    
Sbjct: 546 LLKVALAHPRMLMAGIALCVVAAGIAAAYLPRAFLPTFNEGSLTINVTFRPGISLAESSR 605

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
                +   +             R +         +  LE+  K 
Sbjct: 606 VGAIAERLVLDVPEVATVGRRTGRAELDEHAEGVHSSDLEVRLKA 650



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 55/137 (40%), Gaps = 8/137 (5%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMK 749
           L ++T + + I  T   F L G   N   +  +   IG  V+D VV    ++ R+R+N  
Sbjct: 386 LISLTAIPVSILATALVFWLLGFSINTMTLGGLAIAIGELVDDAVVDVENIFRRLRENRA 445

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI---PMAFGIV 806
             +   S  D++  + +E     VY +    +  +P+    G     FA         I+
Sbjct: 446 EGSPR-SLFDVVVAASSEVRSGIVYATAIIVLVFVPLFALSGIEGRLFAPLGQAYIVAIL 504

Query: 807 VAASSSIFIAAPILLFI 823
            +   S+ +   +  ++
Sbjct: 505 ASLLVSVTLTPVLASWL 521



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/237 (11%), Positives = 87/237 (36%), Gaps = 9/237 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +  ++  D   Q         + +Q           ++  +++ + E      +    
Sbjct: 810  REIADIRETDGPNQILRENGRRRIVVQANSDGRTDMAAIIAGIRRVLDETRLPEGVSARL 869

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT--LILDITKTLGFFAL 713
                +   E  R      ++S   +   +  R++    L  I    + L +  ++    +
Sbjct: 870  EGSYEAQGEAARTIGGLSLVSLALVFALLHGRYR-SVPLALIVMGNVPLALIGSVLALWI 928

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
              +  ++ ++   +TL G    + ++    M    +    ++    +   S+ E +   +
Sbjct: 929  ADLPLSVASMIGFVTLTGIVARNGILKISHMLNLARDEGLALGPALVTRASL-ERMTPVL 987

Query: 774  YTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             T+++A I+++P+ + G      ++   A+ +  G++ A      +  P+L+ +++ 
Sbjct: 988  MTALSAGIALVPLLIDGTAPGKEILHPVAVTIFGGLMSATLLD-AVLTPVLVLMFER 1043


>gi|163735645|ref|ZP_02143076.1| putative cation efflux system transmembrane protein [Roseobacter
           litoralis Och 149]
 gi|161391073|gb|EDQ15411.1| putative cation efflux system transmembrane protein [Roseobacter
           litoralis Och 149]
          Length = 1060

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/656 (11%), Positives = 174/656 (26%), Gaps = 40/656 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N +++++ +++  +  + A+     ++ +D  P       I                   
Sbjct: 12  NRFVILVLAVMMGVAGIWAI----RETPVDAIPDLSDVQVI---------VRTPYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F D         +V  +L  + 
Sbjct: 59  QVVENQITYPLATSLLAVPGAQDVRGFSFFGDSFVYVVFEDGTDLYWARSRVLEYLGQIT 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L       L    T                     +           ++   +   + 
Sbjct: 119 GSLPDGVSPQLGPDATGVGWIYQY-ALIDRTGTHDLAQLRTLQDWFLKYELQAVDGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q     DP++LR    T  ++       N    G +  +        +   +
Sbjct: 178 ATIGGMVKQYQVVVDPNKLRAYDITLTQLRNAIQAANRETGGSVIEMGEAEFMIRSSGYI 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           ++  ++S                     +  +E GA        D    P      G   
Sbjct: 238 DELSDLS------------------SAPLMINERGAALTLGDVADIRLGPELRRGVGEFD 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   +   +   +   TI+        LR         I      G    +    K
Sbjct: 280 GQGDAVGGVVIMRWGGNALATIKAVEARIEELRPNLPEGVEIITTYDRSGVIERAIDNLK 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   +V++V    +L+ +  LV   S+ L +     L+   G    + S+ GI + 
Sbjct: 340 KKLTQEFVVVVLVCAAFLLHLRSSLVILLSLPLGIFAAFILMKAQGVNANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRKNQ----SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG  VD++I++ E +     K +    + +  +    S     +F S     ++ + +F 
Sbjct: 400 IGAMVDASIVMIEAMHRRLEKEKLTAENRWRIVQECASEVGPALFYSLAIITVSFLPVFV 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  +   +I++V  +M + +R + +             +  
Sbjct: 460 LENQEGRLFAPLAYTKTYAMAAAAILSITLVPVLMGYFVRGRILPERKNPLNRLVVFLYR 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                 +   +    ++                       +G           V +   R
Sbjct: 520 PFLDAAIAWPWATTLLAGALVASMWYPYQRLGSEFMPELNEGDFLYMPSFYPGVSIGKAR 579

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             L+       +    +     + R +     +        +  K   E  P  T+
Sbjct: 580 EVLQQTNRLIATIPEVETVHGKVGRAETATDPAPLTMVETTIQLKPEAEWRPGMTM 635



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 85/288 (29%), Gaps = 16/288 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I L +        +    + +   +   V L+ +         G I  +N     
Sbjct: 756  LERFPINLRYPQAWRDSPERLENLPVVTPSGAHVPLTALADVRIVDGPGMIRSENARRTG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               + +  +            +  +         T         ++   L       ++I
Sbjct: 816  FVFIDIAGRDLGGYVAEAQRVVADQVRLPPGYSLTWSGQYEYIERMQDRLAIVAPATLMI 875

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +++++         +  +  L + +   + F      + ++  +   + L G +V 
Sbjct: 876  --ITLMLFMAFNRVIEVGII-LAALPVALAGGVWFLWYLSFDISIAVLVGFIALAGVAVE 932

Query: 736  DKVVVY-------DRMRKNMKLYTTS---ISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
              +V+        ++ RK  +            + + +     +   V T    F +++P
Sbjct: 933  TAIVMLLYLNLAWEKRRKLGQSEGRKLTQDDIEEAVFEGAVLRVRPKVMTVATIFAALIP 992

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            +      G  ++   A PM  G+V A   ++F+     +       K 
Sbjct: 993  IMYGTGTGSEIMQRIAAPMIGGMVTATLLTLFVIPSTFVIWKRLALKR 1040



 Score = 44.3 bits (102), Expect = 0.077,   Method: Composition-based stats.
 Identities = 27/161 (16%), Positives = 59/161 (36%), Gaps = 4/161 (2%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + +L+          +L  + +L L I          G+  N+ ++  +   IG  V+
Sbjct: 346 FVVVVLVCAAFLLHLRSSLVILLSLPLGIFAAFILMKAQGVNANIMSLGGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
             +V+ + M + ++    +   R  ++ +  +E      Y+     +S LP+ V      
Sbjct: 406 ASIVMIEAMHRRLEKEKLTAENRWRIVQECASEVGPALFYSLAIITVSFLPVFVLENQEG 465

Query: 795 GSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             F   A    + +  AA  SI +   ++ +    R    R
Sbjct: 466 RLFAPLAYTKTYAMAAAAILSITLVPVLMGYFVRGRILPER 506


>gi|124266820|ref|YP_001020824.1| putative cation efflux system transmembrane protein [Methylibium
           petroleiphilum PM1]
 gi|124259595|gb|ABM94589.1| putative cation efflux system transmembrane protein [Methylibium
           petroleiphilum PM1]
          Length = 1063

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/536 (12%), Positives = 144/536 (26%), Gaps = 48/536 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L   ++   GL         ++ LD  P       I                  
Sbjct: 12  NRFLVLLATVIVTAWGLWAV-----QRTPLDALPDLSDVQVI---------IRTPYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +    +         + + + F D         +V  +L  V
Sbjct: 58  PRIVENQVTYPLTTTMLSVPGAKVVRGYSFFGDSFVYVLFDDGTDPYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    K  L    T                   A +           ++    +  +
Sbjct: 118 QSRLPAAAKPALGPDATGVGWIYQY-ALVDRSGTMDAGQLRALQDWFLKYELKTVPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L         +       N    G +  +           L
Sbjct: 177 VASVGGMVRQYQVLLDPDKLAAYNVPHGAVIDAIRNANQEAGGSVLELGEAEYVVRASGL 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                     + +S  + G              P      G +
Sbjct: 237 LATLDDFR------------------KIPLSATDAGVSVRLGDVARIQVGPEMRRGIGEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   ++  +   TI       A L+A        +           +    
Sbjct: 279 DGEGEATGGVIVMRSGKNALETIAAVKTKIASLQASLPKGVEIVPTYDRSSLIERAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +   VA  ++ L ++ +  ++   G    + S+ GI +
Sbjct: 339 SHKLIEEFIVVALVCVVFLFHLRSAFVAIVTLPLGILASFIVMHYQGVNANVMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            IG  VD+ +++ E   +              K ++ +  +          +F S +   
Sbjct: 399 AIGAMVDAAVVMIENAHKHIEAWRHEHPGEDLKGEAQWRVVGDAAVEVGPALFFSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
           ++ + +F      G      A T   ++  S   A+++V  +M ++IR +      
Sbjct: 459 LSFIPVFTLEAQEGRLFSPLAYTKTYAMAASAGLAVTLVPVLMGYLIRGRIPDERR 514



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 83/252 (32%), Gaps = 11/252 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                     + LS V     S     +  +N        V ++ +   S        + +
Sbjct: 787  PFVTPRGARIVLSDVAELRISDGPPMLRSENARLAGFVYVDIRGRDLKSAVIDMQKVVAE 846

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +         +         + + +L  K +V   +  I +L+Y+  R ++  AL  + T
Sbjct: 847  QVKLTPGYSVSWSGQFEFLERATAKL--KVVVPFTLGIIVVLLYLTFR-RFDEALLILAT 903

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-----KLYTTS 754
            L   +        L G   ++      + L G +    V++   +++       +  ++ 
Sbjct: 904  LPFALIGGFWLLYLLGYNLSVAGAIGFIALAGVAAEFGVIMLLYLKQAWEARLARGLSSD 963

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASS 811
                D I +     +     T       ++P+   GG    V+   A PM  G+V A   
Sbjct: 964  ADLMDAIREGAVLRVRPKAMTVAVIIAGLVPIMFGGGTGSEVMQRIAAPMVGGMVTAPLL 1023

Query: 812  SIFIAAPILLFI 823
            S+F+   I   +
Sbjct: 1024 SMFVVPAIYRLV 1035



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 85/257 (33%), Gaps = 13/257 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V       + V       +   D   +   G              +  +T++  +   
Sbjct: 255 VSVRLGDVARIQVGPEMRRGIGELDGEGEATGGVIVMRSGKNALETIAAVKTKIASLQAS 314

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
               +  + T   + ++   +     +     ++++ + ++      F    A  AI TL
Sbjct: 315 LPKGVEIVPTYDRSSLIERAVENLSHKLIEEFIVVALVCVV----FLFHLRSAFVAIVTL 370

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR---KNMKLYTTSISF 757
            L I  +       G+  N+ ++  +   IG  V+  VV+ +      +  +        
Sbjct: 371 PLGILASFIVMHYQGVNANVMSLGGIAIAIGAMVDAAVVMIENAHKHIEAWRHEHPGEDL 430

Query: 758 R-----DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
           +      ++  +  E      ++ +   +S +P+          F+ P+A+    A ++S
Sbjct: 431 KGEAQWRVVGDAAVEVGPALFFSLLIITLSFIPVFTLEAQEGRLFS-PLAYTKTYAMAAS 489

Query: 813 IFIAAPILLFIYDWRAK 829
             +A  ++  +  +  +
Sbjct: 490 AGLAVTLVPVLMGYLIR 506


>gi|206602953|gb|EDZ39433.1| Putative acriflavin resistance protein [Leptospirillum sp. Group II
           '5-way CG']
          Length = 664

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 49/491 (9%), Positives = 134/491 (27%), Gaps = 20/491 (4%)

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +        V   + +  ++  + ++         R+  + I + F           +  
Sbjct: 37  LYPGASPKDVEQSITVPLEKTLATVENVDHIQSQSREGVSAIQVWFHWDEDLNTGLIESM 96

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +  + ++L    +   L+      + ++     +       +            Q+  
Sbjct: 97  EKVSQILNQLPPGIQDPFLLKFDISNMPVI--NVVVSNPEMDGVHLYDLATNTIEPQLEE 154

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                    +   + Q+    +P ++  L  +   +       N         +     +
Sbjct: 155 VPGVSGAPVNGGNIRQININVNPFQMYALNISPLAVVNAINKANFLLPSGDIRIGTRDLN 214

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 +E ++  +                 PV+  +  E      +      +      
Sbjct: 215 LLTNTQIEHRLLKT-------------VRKIPVLLGTSPEGEPVPVYVEDLATVEDGSES 261

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
             +  +             +   +    ++        LR    P     V         
Sbjct: 262 PSNIVLANGAPAVYLGVHKQPGANTVNVVDDVYKSLPHLRG-LPPGTKVGVSFDQSTYIR 320

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            S    +    + + L +  +++ +      L+   +I L V+  L  LS  G TL + +
Sbjct: 321 ASIRSIQHELVLGSLLAVGTVWIFLGEITATLILGIAIPLAVLAALIFLSFTGQTLNVFT 380

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATV 475
             G+ L  G  +D +I+  E I     + +     +L        + IF + +  ++   
Sbjct: 381 FGGLALASGRLIDDSIVELENIHRHFSQGKEEREVALLEAAREVATPIFSATLVTIVVLF 440

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            + F    G       A+T+ L++  S   + ++   + +   R K           +  
Sbjct: 441 PVLFLKGVGKQLFSPMALTISLALFASFLVSRTVTPLLCLRFFRSKMPLRRPERTREKQE 500

Query: 533 LIPDCIAIQFM 543
              +       
Sbjct: 501 SPLEPRKHPRF 511



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 55/159 (34%), Gaps = 3/159 (1%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+ S +A+        +    L     + L +   L F +  G   N+     +    G 
Sbjct: 331 VLGSLLAVGTVWIFLGEITATLILGIAIPLAVLAALIFLSFTGQTLNVFTFGGLALASGR 390

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++D +V  + + ++             + ++  E        ++   + + P+    G 
Sbjct: 391 LIDDSIVELENIHRHFSQGKEEREV--ALLEAAREVATPIFSATLVTIVVLFPVLFLKGV 448

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               F+ PMA  I +A  +S  ++  +   +     ++ 
Sbjct: 449 GKQLFS-PMALTISLALFASFLVSRTVTPLLCLRFFRSK 486


>gi|206562573|ref|YP_002233336.1| putative cobalt-zinc-cadmium resistance efflux system transporter
           protein [Burkholderia cenocepacia J2315]
 gi|198038613|emb|CAR54573.1| putative cobalt-zinc-cadmium resistance efflux system transporter
           protein [Burkholderia cenocepacia J2315]
          Length = 1070

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 62/601 (10%), Positives = 148/601 (24%), Gaps = 62/601 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L         + +      +  +D  P                   + +      
Sbjct: 13  RWLVMLAIAAVAALGVFS----YQRLPIDAVPDITN-------------VQVQINTSAPG 55

Query: 65  FV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +    + + + L          R   +++T+ F D          V   +Q
Sbjct: 56  YSPLEAEQRITYPVETVMAGLPGLEQTRSISRYGLSQVTVIFKDGTDIYFARQLVNERIQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV------ISHAIEQSMEIIRQRIDQI 174
               KL       +  T+T      + +                A +           Q+
Sbjct: 116 EAKDKLPAGIAPAMGPTSTGLGEIYLWTVEADADARKPDGTRYTAADLRELQDWVVRPQL 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +       + +     +P++L     T A +       N++        R  +
Sbjct: 176 RNVRGVTEVNSIGGYVKEYRVAPNPAKLMSYGLTLADVVRALERNNDNVGAGYIEKRGEQ 235

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                        +I                     +I    +G           +    
Sbjct: 236 YLVRVPGQARTVDDI--------------------ANIVLTNVGGVPVRMKDVGVVDIGR 275

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          I        
Sbjct: 276 ELRTGAATSNGEEVVLGTVFMLMGENSRTVSKAVAAKMEDVNRTLPAGVKAIPVYDRTVL 335

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ VLF+ +   +  L+    I L++++T   +     +  L
Sbjct: 336 VEKAVATVKKNLLEGAVLVIAVLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANL 395

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIF 464
            S+  +  GI   VD  +++ E         QS           F  +      A   + 
Sbjct: 396 MSLGALDFGII--VDGAVVIVENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALI 453

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +  ++  + +F      G      A T+ +++  +M   ++ + A +   I  +  +
Sbjct: 454 FGQLIIMVVYLPIFALTGVEGKMFHPMATTVVMALAAAMVLTVTFIPAAVALFIGERVEE 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +A    R     +G   +  +                 +G + +
Sbjct: 514 KENRLMGWARRAYEPVLAAFMTRPTRVMIGAGAIVLVTLGLATRLGSEFIPSLNEGDLAV 573

Query: 582 G 582
            
Sbjct: 574 S 574



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 82/229 (35%), Gaps = 7/229 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L ++ +     Q    +    V +          + V +  ++   ++   +    + 
Sbjct: 814  AELATIDVAPGPNQISREDGKRRVVVSANVRGRDVGSFVADAREQLQQDVRVPAGYWVSW 873

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  +    +  + V ++   + + +++ F      L   T +   ++  +    L 
Sbjct: 874  GGQFEQLQSASERLKLVVPLALFMVFVLLFVMFNNVKDGLLVFTGIPFALSGGVVSLWLR 933

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  ++TA    + L G +V + +V+   +R    L    +     +       L   + 
Sbjct: 934  GIPLSITAAVGFIALSGVAVLNGLVMISFIR---NLRDEGMPLDAAVHDGALTRLRPVLM 990

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            T++ A +  LPMA     G  V    A  +  GI+ + + ++ +   + 
Sbjct: 991  TALVASLGFLPMAFATGTGAEVQRPLATVVIGGILSSTALTLLVLPVLY 1039



 Score = 39.3 bits (89), Expect = 2.6,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 60/173 (34%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + +          AL     + L +  T        +  NL ++ A+    G 
Sbjct: 348 LEGAVLVIAVLFLFLGNIRAALITALVIPLSMLMTFTGMVNAKVSANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS-------VYTSMAAFISVLP 785
            V+  VV+ +   + +    ++       D+   E  G S       ++  +   +  LP
Sbjct: 406 IVDGAVVIVENCVRRLAHAQSAAGRPLTRDERFAEVFGASQEARRALIFGQLIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    A  +   +  A   ++ FI A + LFI +    K  R+
Sbjct: 466 IFALTGVEGKMFHPMATTVVMALAAAMVLTVTFIPAAVALFIGERVEEKENRL 518


>gi|190891812|ref|YP_001978354.1| cation efflux system protein (heavy metal efflux pump), CzcA family
           [Rhizobium etli CIAT 652]
 gi|190697091|gb|ACE91176.1| probable cation efflux system protein (heavy metal efflux pump),
           CzcA family [Rhizobium etli CIAT 652]
          Length = 1054

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 74/584 (12%), Positives = 170/584 (29%), Gaps = 38/584 (6%)

Query: 10  LYSMICCIGLLIALPNF-LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           L  ++    L +A   + L    LD  P            D++   +          V  
Sbjct: 13  LVLILVGAALAVAGGVYALRSLPLDAIPDLS---------DIQVIVYTEYPGQAPQVVED 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +          + K  +         + + + F D         +V  +L    S+L  
Sbjct: 64  QVTYPLTTSMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLNAAASRLPQ 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                L    T        +       ++        ++R     +  SE   +      
Sbjct: 124 GVTPTLGPDATGVGWVYQYAIVAKQLSLAELRSLQDWVVRF---GVSKSEGVSEVASVGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            + Q     DP+RL+    + + +S      N    G    +         +  ++   +
Sbjct: 181 FVKQYSIIVDPARLKAQGVSLSDISNAVRASNTDVGGRTIELSEFEFMVRGRGYLKGIPD 240

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           I                      +   + G              P        +     +
Sbjct: 241 IE-------------------NIVLKSQNGTPLRLGDVAKVELVPDERRGITELNGEGEV 281

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +   +    IE A      +++        +           +    KGT   
Sbjct: 282 ASGIVLQRFGANALTVIENAKKSLDTVKSSLPAGTEIVPVYDRSTLIESAIETLKGTLVE 341

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + +V +V    +L+ +  LVA   + + +++    + LLG    + S+ GI + IG  +
Sbjct: 342 ESIVVALVTIAFLLHVRSALVAIIMLPVGILIAFIAMKLLGIGANIMSLGGIAIAIGAMI 401

Query: 429 DSNILVNERIREENRKNQSVFCSLD---MGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           D+ I++ E   +   +       +D      S     +F S +   ++ + +F      G
Sbjct: 402 DAAIVMIENAHKHLERAPPDKPRIDILVEAASEVGPALFFSLLIITVSFLPIFTLESQEG 461

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   S+  + F ++++V A+MI  +R + +             I   +    
Sbjct: 462 RLFGPLAFTKTFSMAAAAFLSVTLVPALMILFVRGRIVPEHRNPLNRFLIWIYRPVISGV 521

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           ++ +   +  ++     +   +   G  +  +   G  + +   
Sbjct: 522 LKIKTLTILAAVAILAVTAWPVQDIGSEFMPNLDEGTLMYMPTT 565



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 60/155 (38%), Gaps = 3/155 (1%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S +  L+ I        AL AI  L + I        L GI  N+ ++  +   IG  ++
Sbjct: 343 SIVVALVTIAFLLHVRSALVAIIMLPVGILIAFIAMKLLGIGANIMSLGGIAIAIGAMID 402

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V+ +   K+++         D++ ++ +E      ++ +   +S LP+         
Sbjct: 403 AAIVMIENAHKHLERAPPDKPRIDILVEAASEVGPALFFSLLIITVSFLPIFTLESQEGR 462

Query: 796 SF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            F   A    F +  AA  S+ +   +++     R
Sbjct: 463 LFGPLAFTKTFSMAAAAFLSVTLVPALMILFVRGR 497



 Score = 41.2 bits (94), Expect = 0.79,   Method: Composition-based stats.
 Identities = 25/195 (12%), Positives = 60/195 (30%), Gaps = 16/195 (8%)

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITK 706
                  +     +       K  + +++     LI++ +   +       I  L L    
Sbjct: 839  TMPAGYSVAWSGQFEYLQRAKARLAIVVPLTLALIFLLLYLNFKRLTETMIVMLSLPFAL 898

Query: 707  TLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----DRMRKNMKLYTTSI----- 755
              G +     G   ++      + L G +    V++       M++  K           
Sbjct: 899  VGGIWLTWWLGFNASVAVAVGFIALAGVAAETGVIMLIYLDHAMKEQRKTCEKGGRCFSK 958

Query: 756  -SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASS 811
                  I     E +   + T +A    ++P+      G  ++   A+PM  G++ +   
Sbjct: 959  LDLNRAIMVGAVERVRPKMMTVVAIMAGLVPILWRTGTGSEIMQRIAVPMIGGMISSTLL 1018

Query: 812  SIFIAAPILLFIYDW 826
            ++ +   +   I  W
Sbjct: 1019 TLIVIPAVYGLIKGW 1033


>gi|291302578|ref|YP_003513856.1| MMPL domain-containing protein [Stackebrandtia nassauensis DSM
           44728]
 gi|290571798|gb|ADD44763.1| MMPL domain protein [Stackebrandtia nassauensis DSM 44728]
          Length = 740

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 85/665 (12%), Positives = 189/665 (28%), Gaps = 61/665 (9%)

Query: 210 AKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPV 269
           AK   H       +   +  +   +D         + V      +          +    
Sbjct: 51  AKAEDHIEDEFGRQDTDVVALYESKDDKVTDADFAESVTDVIADVEDRDEVEKVSSCYAD 110

Query: 270 VDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAG 329
             +  D     +      D+   P     D     A  +N    + +A        E   
Sbjct: 111 KIVEGDPRTDPKVTCGEIDDDPNPFVSDDDHSTYVAITLNGEDDAARA--------EQFE 162

Query: 330 ILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLV 389
            +   L+A  L   L          +  + +           ++L ++ +I         
Sbjct: 163 DIRDDLKAEGLTTTLGGQAAIFDDVNTQTKADMVTAETYSMPILLGLMIIIFGSLVAATT 222

Query: 390 ADFSIFLNVILTLALLSLLGATLTLPSIAG---IVLGIGLAVDSNILVNERIREENRKNQ 446
                 L ++    +  LL     +   A     ++G+GLA+D  + V  R REE    Q
Sbjct: 223 PLLVGVLAIMGGFIITRLLTYVTDVSVFAINVITIIGLGLAIDYALFVVNRFREELDNGQ 282

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISI 506
           +   ++    + A  T+  S +T +++   L  F    + G A     ++ ++M  ++++
Sbjct: 283 TKKDAVSRTMATAGRTVMVSGLTIILSLAGLLLFPLPFLHGIAYGGMAAVAVAMLGSLTV 342

Query: 507 VRAMMIFIIRYKKMKSIDINPL--SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           + A++  +        +                  I     R   + I  + +I ++   
Sbjct: 343 LPALLAVLGHRVDAVRMPWRRKGKKVTKERGVWSKIGGSVMRRPALYIIGVLAILAVLAS 402

Query: 565 FTHGLNYGIDF-------------------------KGGIQLGVLANRPVDLSVVRSNLE 599
                 +G                             G + + V     V L+    ++E
Sbjct: 403 PFLNAAFGTVDEKVLPSGTESRTVTETMEKDFPNGKDGTLTIFVDGGGDVSLAQTIEDVE 462

Query: 600 SLQIGDISFQNFDG-EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            L + +         +   L         S     + + +            +       
Sbjct: 463 DLDLVEAVTPLESNLDSAVLQVRYDADAQSPEARDLADEILALEPPTQGTVEVTGMPAQL 522

Query: 659 PKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE 717
                ++  +     +  A   L+ +++ F      L AI   I+ I  + G       E
Sbjct: 523 NDQFSDIGERLPWLGLYVAAVTLLLLFLAFGSILLPLKAILMNIVSIGASFGVIVWIFQE 582

Query: 718 FNLTAVAAV---------------LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +L+ +                  + L G S + +V +  R+R+       +      + 
Sbjct: 583 GHLSNLLGFTPSGYLEPSNLLLMVVLLFGLSTDYEVFLLSRVREEW---DRTGDNTASVL 639

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGG-SVIGSFAIPMAFGIVVA-ASSSIFIAAPIL 820
             +  T G  + ++    I V+     GG   +    I MA  I V      + +    +
Sbjct: 640 TGLQRTGG-IITSAALLLIVVVVSFAMGGIVFLKMIGIGMAVAIFVDATLVRMLLVPATM 698

Query: 821 LFIYD 825
             +  
Sbjct: 699 RILGR 703


>gi|330469865|ref|YP_004407608.1| acriflavin resistance protein [Verrucosispora maris AB-18-032]
 gi|328812836|gb|AEB47008.1| acriflavin resistance protein [Verrucosispora maris AB-18-032]
          Length = 1097

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/515 (11%), Positives = 148/515 (28%), Gaps = 43/515 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   + ++  +    G                FP+A                        
Sbjct: 11  NRGLVALIAVVTTAFGAYAVPSLKQQLLPSLEFPAAFIVAS--------------YPGAA 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +     +        + R+    IT+ +      +++  K+   L   
Sbjct: 57  PEVVESQVTEPIENSLRGIPALDTVTSTSREGLTTITVQYEFGTDLDDVVSKMQTALN-- 114

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L       +   +T+   ++VL+ +        A +    +    + ++   E    
Sbjct: 115 RTRLPDGVDPQVFAGSTDDLPAVVLAASGGGDERELASKLRDVV----VPELAAIEGVRG 170

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    DP++L +       ++        +          + D + +  +
Sbjct: 171 VELTGVRDELVVITPDPAKLAKAKVQPTAITTALKANGVAVPAG-----AVLDGERSLPV 225

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                  +   L               V ++     A          + + L        
Sbjct: 226 QVGAPLTTLDELRD-------------VIVAPPVKKAGPVRLGDVATVEEQLTPPTAITR 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +     +              LR          V          S    
Sbjct: 273 TNGRESLGIAVTADPDGNAVQISHAVADRLDDLRG--ATGAELTVVLDQAPFVEKSIKTL 330

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   + ++V+ + +L  +  +V   SI L+V++ L  L +   +L L ++  + +
Sbjct: 331 STEGLLGLIMAVVVILVFLLSIRSTIVTAVSIPLSVVVALLALWIGDYSLNLLTLGALTV 390

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G  VD +I+V E I+      +    ++          +  S +T +     +   G 
Sbjct: 391 AVGRVVDDSIVVLENIKRHLTYGEPKREAILTAVREVAGAVTASTLTTVAVFAPIALVGG 450

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G     FAIT+ +++L S+  +++++  +  + 
Sbjct: 451 FVGQLFAPFAITVTVALLASLLVSLTVIPVLAYWF 485



 Score = 71.3 bits (172), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 62/142 (43%), Gaps = 7/142 (4%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
           + L  +G++G+I++ + +L+++         +    ++ L +   L    +     NL  
Sbjct: 328 KTLSTEGLLGLIMAVVVILVFLL---SIRSTIVTAVSIPLSVVVALLALWIGDYSLNLLT 384

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A+   +G  V+D +VV + ++   +  T     R+ I  ++ E  G    +++     
Sbjct: 385 LGALTVAVGRVVDDSIVVLENIK---RHLTYGEPKREAILTAVREVAGAVTASTLTTVAV 441

Query: 783 VLPMAVWGGSVIGSFA-IPMAF 803
             P+A+ GG V   FA   +  
Sbjct: 442 FAPIALVGGFVGQLFAPFAITV 463



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/261 (13%), Positives = 82/261 (31%), Gaps = 9/261 (3%)

Query: 549 GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
            V  S   +      +     +  +       L V   + + +  V+    +        
Sbjct: 729 LVAQSFRGTPVGQVTIEGGSRDVVLRLSAKPPLTVDELKALPVGPVKLGDIAEVTETEGP 788

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
           Q                        +   +++++  I           V  +        
Sbjct: 789 QQVRRIDGERSVSVTGTVTGSDLGAISTELQQRLDAIDVPGATLTLGGVSAEQRETFADL 848

Query: 669 GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
           G+  V+ +   + + +   F+    AL  + ++    T  +      G   ++ A+  VL
Sbjct: 849 GL-AVLAAIAIVFLIMMATFRSVVQALILLVSIPFAATGAVALLLATGTALSVPALIGVL 907

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            L+G  V + +V+ D M +        +  R+ + +     L   + T++A   ++ PMA
Sbjct: 908 MLVGIVVTNAIVLLDLMNQYRAQ---GMGVREAVVEGGRHRLRPILMTAIATIFALTPMA 964

Query: 788 VW----GGSVIGSFAIPMAFG 804
                 GG +    AI +  G
Sbjct: 965 FGLTGEGGFISRPLAIVVIGG 985



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 63/529 (11%), Positives = 150/529 (28%), Gaps = 55/529 (10%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R   W  +   ++   G        L + +   F     ++ +++  +L  G+ L     
Sbjct: 525  RAYRWATLAVGVLVLFGTF-----GLARQLESNFLDDSGQDTLNIRQELPVGTGL----A 575

Query: 62   EDDFVNGFLQMYSDE---LRS-FLKKEGIGVFSMRQIQNKI---TLSFADSRFKENIADK 114
              D     ++    +   + S  +   G          N +    L        + +   
Sbjct: 576  GTDAAARRVEAVLADTPGVESYQVTAGGGDSPWTGSAGNNVANYALRLDGETDAKAMRGI 635

Query: 115  VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            +      + +              +  E+++++               +    + R+   
Sbjct: 636  LRDRFTSLGATAGEITFPAGQGGASANELAVIVRAA-------DQETLATAAEQARVALA 688

Query: 175  GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
            GIS          + + ++    D     +   T A +                      
Sbjct: 689  GISGVEDVSTTLAQQVPRVDVAVDRVAASRAGLTEAAVGQLVAQSFRGTPVG-------- 740

Query: 235  DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                 Q  +E                       P+       +            + +  
Sbjct: 741  -----QVTIEGGSR---------DVVLRLSAKPPLTVDELKALPVGPVKLGDIAEVTETE 786

Query: 295  AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                  R+     ++       + +    T     + A  +   +L +     E+R   A
Sbjct: 787  GPQQVRRIDGERSVSVTGTVTGSDLGAISTELQQRLDAIDVPGATLTLGGVSAEQRETFA 846

Query: 355  DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
            DLG              +V +++          L+   SI       +ALL   G  L++
Sbjct: 847  DLGL------AVLAAIAIVFLIMMATFRSVVQALILLVSIPFAATGAVALLLATGTALSV 900

Query: 415  PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            P++ G+++ +G+ V + I++ + + +   +   V  ++  G       I  + I  + A 
Sbjct: 901  PALIGVLMLVGIVVTNAIVLLDLMNQYRAQGMGVREAVVEGGRHRLRPILMTAIATIFAL 960

Query: 475  VVLFF----FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
              + F     GG   R  AI +   +L S    + +V  +   +   K+
Sbjct: 961  TPMAFGLTGEGGFISRPLAIVVIGGLLSSTLLTLILVPTLYAMVEDTKQ 1009


>gi|295084884|emb|CBK66407.1| heavy metal efflux pump (cobalt-zinc-cadmium) [Bacteroides
           xylanisolvens XB1A]
          Length = 1001

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 69/617 (11%), Positives = 168/617 (27%), Gaps = 34/617 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 27  AEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLAVV 86

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L V+  K  L   +     +++     D      ++           ++  +    Q
Sbjct: 87  SESLPVNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQ 144

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +   + DP R+R    +  ++       N +  G +               
Sbjct: 145 VAVLGGDIKEYQIQLDPERMRHYGISMGEVMAVTQDMNLNANGGVLYEFGNEYIVRGVLS 204

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                ++    +               V                   IG     +     
Sbjct: 205 TSKTEQLGKAVVKTVNNFPVTLEDIADVT------------------IGPKAPKLGTASE 246

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I    A  +   T +    L  + +     +K++    R       S    
Sbjct: 247 RGKSAVLMTITKQPATSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIGNV 306

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+ +
Sbjct: 307 KKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSILTLHYMGLTINTMSLGGMAI 366

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +  R+N+    +        +          I +S +  +++ 
Sbjct: 367 AIGSLVDDAIVDVENVYKRLRENRQKAEAERLSTLEVVFNASKEVRMPILNSTLIIVVSF 426

Query: 475 VVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LFF  G   R      +   +++  S   A+++   +  +++   K            
Sbjct: 427 VPLFFLSGMEGRMLVPLGVAFIVALFASTVVALTLTPVLCSYLLGSNKTNKELKEAPLAR 486

Query: 532 FLIPDCIA---IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
           ++               R        LF +                 +G   + + +   
Sbjct: 487 WMKGIYEKALTWVLAHKRVTLGSTIALFVVALGVFFTLGRSFLPSFNEGSFTINISSLPG 546

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L          +   ++            R +            +E   +        
Sbjct: 547 ISLEESNKMGHRAEKLLMTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSRSE 606

Query: 649 STIQNTEIVGPKISREL 665
                 E +G      +
Sbjct: 607 LVADVREKLGTITGANI 623



 Score = 77.8 bits (189), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 86/266 (32%), Gaps = 11/266 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           K      V      D+++     +     +                         +  + 
Sbjct: 217 KTVNNFPVTLEDIADVTIGPKAPKLGTASERGKSAVLMTITKQPATSTLELTDKLEASLK 276

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
           ++ K    ++   + I             + +    G I   I + +++         L 
Sbjct: 277 DLQKNLPPDVKVSTDIFRQSRFIESSIGNVKKSLFEGGIFVVIVLFLFLA---NVRTTLI 333

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLY 751
           ++ TL L +  ++      G+  N  ++  +   IG  V+D +V    VY R+R+N +  
Sbjct: 334 SLVTLPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDVENVYKRLRENRQKA 393

Query: 752 T-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVV 807
               +S  +++  +  E     + +++   +S +P+    G    ++    +     +  
Sbjct: 394 EAERLSTLEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGRMLVPLGVAFIVALFA 453

Query: 808 AASSSIFIAAPILLFIYDWRAKNARI 833
           +   ++ +   +  ++      N  +
Sbjct: 454 STVVALTLTPVLCSYLLGSNKTNKEL 479



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 102/268 (38%), Gaps = 11/268 (4%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            +      ++  + N  VD +  R    S     +S    +      V+ +     +VA  
Sbjct: 735  VKDDARDEIEKIHNLMVDTNDGRKVPLSYVAEVVSAMGPNTINRENVKRKIVISANVADR 794

Query: 633  RVLEMVKKKITEIVPLSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
             +  +V      I     +        G +   E      + +      ++I++ +  ++
Sbjct: 795  DLRSVVNDIQKRIDTSVQLPEGYHIEYGGQFESEQAASRTLALTSFISIVVIFLLLYNEF 854

Query: 691  YFAL-GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                   +  L L +    G FAL     E ++ A+   ++L G +  + +++      N
Sbjct: 855  RSVKESGVILLNLPLALIGGVFALVITTGEVSIPAIIGFISLFGIATRNGMLLISHY--N 912

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAF 803
                   ++  D + +   + L   + T++++ ++++P+A+     G+ I S  A  +  
Sbjct: 913  HLQKEEGLNVYDSVIRGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQSPMAKVILG 972

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G++ +   + FI   + L ++  +A+ +
Sbjct: 973  GLLTSTFLNGFIVPIVYLMMHRKKAQES 1000


>gi|218258669|ref|ZP_03474990.1| hypothetical protein PRABACTJOHN_00645 [Parabacteroides johnsonii
           DSM 18315]
 gi|218225294|gb|EEC97944.1| hypothetical protein PRABACTJOHN_00645 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1056

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 71/524 (13%), Positives = 162/524 (30%), Gaps = 24/524 (4%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   + +L   I  +G +        Q  +D  P         L ++L+ G     E   
Sbjct: 11  NPVTICMLVLAILLLGKIS-----YDQLAVDLLPDLNNP---RLFIELKAG-----ERPP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           ++    F++              +    +R    +IT+ +   +  +     +   +   
Sbjct: 58  EEIEKQFIKNMESMAIRQSDVTQVS-SVIRAGSARITVEYTWKKDMDEAFLDLQKAMNPF 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
                 D  +  +      +  +VL   +   +     E          +++   E    
Sbjct: 117 AQH--KDITELKITQHDPNQSPVVLIGLSHRSIT-DMAELRKVAESYIRNELIRLEGVAD 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S   +  L    DP +L     T   +S      N S  G       L+    +  L
Sbjct: 174 VTLSGDEISTLVIRTDPYKLDAFKLTINDLSSKIEANNQSISGGRVSELGLQYLVKSSSL 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVD---ISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              + +   + +       +                       F      +    A   +
Sbjct: 234 FTTESDFENLIVGYRPVTVETDGTAVSGTSGASVSSSTDKAPIFLREVATVSFENARPEN 293

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +            + + +    ++      A++       +   V          + 
Sbjct: 294 IVRINGERSIGLSVYKEMRFNTVKVVDGVIRQLAVIEQALPGYRF-QVITNQGTFIKNAI 352

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              K +  +   L +++LF+ +      L+   +I +++I T  L+     TL + ++ G
Sbjct: 353 GEVKSSAVLGIILAVVILFVFLRRLGTTLIVSLAIPISIIATFNLMFFNHLTLNIMTLGG 412

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + LG G+ VD+ I+V E I     K  ++  +   G S     +  S +T ++  + + +
Sbjct: 413 LALGAGMLVDNAIVVIESIFRNQEKGMTIREAAITGTSEVAGAVIASTLTTIVVFLPIVY 472

Query: 480 FGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
             G +    +  A T+  S++ S+F AI ++  +   I      
Sbjct: 473 LHGASGELFKDQAWTVTFSLVSSLFVAILVIPMLYDRITGRPNP 516



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 84/272 (30%), Gaps = 13/272 (4%)

Query: 561 ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
           +          G    G     V ++       +R                       + 
Sbjct: 245 VGYRPVTVETDGTAVSGTSGASVSSSTDKAPIFLREVATVSFENARPENIVRINGERSIG 304

Query: 621 LQYQPGDSVAQTRVLEMVKKKI---TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           L           +V++ V +++    + +P    Q     G  I   +       V+   
Sbjct: 305 LSVYKEMRFNTVKVVDGVIRQLAVIEQALPGYRFQVITNQGTFIKNAIGEVKSSAVLGII 364

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           +A++I      +    L     + + I  T        +  N+  +  +    G  V++ 
Sbjct: 365 LAVVILFVFLRRLGTTLIVSLAIPISIIATFNLMFFNHLTLNIMTLGGLALGAGMLVDNA 424

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVI 794
           +VV + +    +     ++ R+      +E  G  + +++   +  LP+       G + 
Sbjct: 425 IVVIESI---FRNQEKGMTIREAAITGTSEVAGAVIASTLTTIVVFLPIVYLHGASGELF 481

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              A      +  +  SS+F+A  ++  +YD 
Sbjct: 482 KDQAWT----VTFSLVSSLFVAILVIPMLYDR 509



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 101/237 (42%), Gaps = 7/237 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              + ++       + F   +N + ++        +  RV + ++  + +I   +    T 
Sbjct: 821  QEIATITHSQAPKEIFRRGQNRISKVTANLDAGYSLDRVADNIRFAMKDIDLPANYSITV 880

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  +E +   +  + +S I + + +  +F+        + T+ L +   +  F L 
Sbjct: 881  TGEEEKRQESMDSLMFALALSVILVYMVLASQFESLLHPFTILLTIPLAVVGAILLFFLT 940

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   N+  V  ++ L+G +VN+ +++ DR+    +L  + +   D I +S  + +   + 
Sbjct: 941  GTTINMMGVIGIVMLVGIAVNNSIILVDRIN---QLKQSGMELTDAIVESGQQRIRPILM 997

Query: 775  TSMAAFISVLPM-AVWG-GSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            T++   +++LPM   +G G+ + S  AI +  G+V +   S+ +   +       + 
Sbjct: 998  TTLTTILALLPMTFGFGEGASLRSPMAIAVIGGLVTSTVMSLMVIPCVYYVFEKMKR 1054


>gi|209883184|ref|YP_002287041.1| cation efflux system protein CusA [Oligotropha carboxidovorans OM5]
 gi|209871380|gb|ACI91176.1| cation efflux system protein CusA [Oligotropha carboxidovorans OM5]
          Length = 1058

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 72/591 (12%), Positives = 168/591 (28%), Gaps = 42/591 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   + +        GL       L    LD  P       I          +      
Sbjct: 11  RNLVLVFVGTIFAVAAGLYA-----LKTLPLDAIPDLSDVQVI---------VYTEYSGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTSMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLNA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L       L    T        +    +  ++        +IR        +E   
Sbjct: 117 AAQRLPPGVTPTLGPDATGVGWVYQYAVVAKEMTLAELRSLQDWVIRF---GASKAEGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP+RLR L  +  ++       N    G    +         + 
Sbjct: 174 EVASVGGFVKQYSIVVDPNRLRALGISLDRVRDAVKASNADVGGRTVELSEFEFMVRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I  + L               V+I  DE           +             
Sbjct: 234 YIRSVADIENVVLKTDRGVSLRVRDVARVEIVPDERRGITELNGEGE------------- 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +    IE      A + +        +           +   
Sbjct: 281 ------VASGIVLQRFGANALTVIENVKARLAEIASSLPKGAEIVPVYDRSELIGRAIKT 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T    + +V +V  + +L+ +  LVA   + + +++  A +   G    + S+ GI 
Sbjct: 335 LKSTLIEESIIVALVCVVFLLHLRSALVAILMLPVGILIAFAAMKAFGLGSNIMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLF 478
           + +G  +D+ I++ E   +   +       +++    A      +F S +   ++ + +F
Sbjct: 395 IAVGAMIDAAIVMIENAHKHLERAPPDKPRVEILIEAASQVGPALFFSLLVITVSFLPIF 454

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   ++++V A+M+  +R + +             + 
Sbjct: 455 TLESQEGRMFGPLAFTKTFAMAAAALLSVTLVPALMVVFVRGRIIPEHRNPINRFLIWVY 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             I    ++A+   + ++++    ++      G  +      G  + +   
Sbjct: 515 RPIIRGVLKAKTLTILVALIALGVTVWPARQLGSEFMPSLDEGTLMYMPTT 565



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 65/159 (40%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + ++  + +R     AL AI  L + I         FG+  N+ ++  +   +G
Sbjct: 343 SIIVALVCVVFLLHLR----SALVAILMLPVGILIAFAAMKAFGLGSNIMSLGGIAIAVG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             ++  +V+ +   K+++         +++ ++ ++      ++ +   +S LP+     
Sbjct: 399 AMIDAAIVMIENAHKHLERAPPDKPRVEILIEAASQVGPALFFSLLVITVSFLPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRMFGPLAFTKTFAMAAAALLSVTLVPALMVVFVRGR 497



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/152 (17%), Positives = 49/152 (32%), Gaps = 19/152 (12%)

Query: 697  ITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---------- 744
            I  L L      G       G   ++      + L G +    VV+   +          
Sbjct: 889  IVMLSLPFALVGGIWLMWWLGFNMSVAVAVGFIALAGVAAETGVVML--IYLEQAMAELR 946

Query: 745  --RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              R+      T     + I     E +   + T +A    ++P+      G  V+   A+
Sbjct: 947  AEREAEGRSFTRTDLYEAIMLGAVERVRPKMMTVIAITAGLVPILWSTGTGSEVMQRIAV 1006

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            PM  G+V +   ++ +   +   I  WR   +
Sbjct: 1007 PMIGGMVSSTVLTLVVIPAVYGLIKGWRLPRS 1038


>gi|172058852|ref|YP_001815312.1| MMPL domain-containing protein [Exiguobacterium sibiricum 255-15]
 gi|171991373|gb|ACB62295.1| MMPL domain protein [Exiguobacterium sibiricum 255-15]
          Length = 701

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 83/632 (13%), Positives = 175/632 (27%), Gaps = 68/632 (10%)

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
           F    H+ +V    ++   R+  E           V         P   +      +   
Sbjct: 59  FKQDPHQIIVLFEGEKESIRQEMERHVKAFRTIQGVGQVVGPQENPEAFKDGKGYVSIGI 118

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG-LVLIVLFM 379
            +        +   L            E   V     +         ++     L+VLF+
Sbjct: 119 PDIDSSWVKTVQQKLDPQDGSTIRLTGEPLIVDDLNTASKNDLVRAELIGVPAALLVLFL 178

Query: 380 IVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI---AGIVLGIGLAVDSNILVNE 436
           +       ++      +  I     L  +     L      A  ++ + L +D ++L   
Sbjct: 179 VFGTPLAAILPLIMGLVTFIFGAGTLYFIAGQQELSIFVLNAVAMISLALGIDFSLLYVN 238

Query: 437 RIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSI 496
           R REE    +S+  + ++  + A  +I  S I   +    L        +  A+   +S+
Sbjct: 239 RFREERTAGRSITEAAEVSVATAGRSILFSGICVFVGLAGLLVIDVDVFQAVALGTLVSV 298

Query: 497 LISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILF 556
           L ++ +A++++ A++  +    +   I      +  +    +A   M+        S+L 
Sbjct: 299 LGAVISAVTLLPALLALLGGSLEKGRIFKADSDQGEVRWRKLARFVMKRPVAITIFSLLL 358

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLG---------------------------------- 582
            +  +  L    LN                                              
Sbjct: 359 LLPCLIPLRDLELNIPQASALPEDYESRLAFEAWEKTFGDDGTDAVVLLKADFQTEQGVE 418

Query: 583 ------VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
                         +S V S     +    S       +    +L           RV  
Sbjct: 419 KLEALTTRLEADAGVSSVISATSLAEANGQSVTQIAASEQGKQQLASLIAFDSGIARVNV 478

Query: 637 MV----------KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
            +          K           +        +I  E+  K  + + +  +A  I +  
Sbjct: 479 KLTGDPGDKSSQKWVREVRDQGYQVGGPAAFNQEIYDEIYSKMPLALGLVLLATFIILLF 538

Query: 687 RF-KWYFALGAITTLILDITKTLGFFALF---GIEF------NLTAVAAVLTLIGYSVND 736
            F      + AI   +L +  T G   +    G  F       LT V     + G S++ 
Sbjct: 539 AFQSILIPIKAILMNLLSLGATFGLLVILFESGWVFPAETIGILTPVFIFSLVFGLSMDY 598

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           +V +  RM +    Y  +       +  + +T       ++   +     A  G S I  
Sbjct: 599 EVFLVSRMEEY---YDETGDNDLATEMGLAKTSKIITSAALIMIVVTGAFAFTGVSPIKQ 655

Query: 797 FAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
             + +A  I +      +F+   ++     W 
Sbjct: 656 LGVGIALAIFIDATIVRMFLVPALMKLFGHWN 687


>gi|302039190|ref|YP_003799512.1| RND-type efflux transporter, transmembrane pump [Candidatus
           Nitrospira defluvii]
 gi|300607254|emb|CBK43587.1| RND-type efflux transporter, transmembrane pump [Candidatus
           Nitrospira defluvii]
          Length = 1110

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 78/676 (11%), Positives = 187/676 (27%), Gaps = 33/676 (4%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +    ++      +GL   +         +  P  +                L       
Sbjct: 19  SKLTPLIIIASLLLGLFAIVLT-----PREEEPQIVVPMA---------DVWLSFPGASA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   L    +   S +K         R     I + F      E     +   L    
Sbjct: 65  KVVEEQLTKPIERKLSEIKTVEYVYSISRPGGALIIVRFYVGEPMEQSLVDLYDKLMSNQ 124

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    +   +      ++ IV    + ++     + Q   +  Q ++       T   
Sbjct: 125 DLLPPGAQPFQVKPRDVNDVPIVTLTLSSERYTDFQLRQ---LGDQVLEDAKKVPGTAAG 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   +L  + DPSRL+    T  +++      N +     F  R           +
Sbjct: 182 FVVGGRGRELRVQIDPSRLKAYGLTPLRVAGVIQGENLALPTGRFESRNESFLVETGRFI 241

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFE----------VTRDNIGKP 293
             K ++ G+ +               V     E  +  +            V R++    
Sbjct: 242 RSKEDLEGVVVGVNEQRPVYLRQVAEVTDGPTEATSYVWHGEGPGEGRSSLVKRESQEGL 301

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                + R            + +A  +     +        L+   +P  + +   R+ G
Sbjct: 302 RETRHEERTSPESPAVTVAIAKQAGTNAVTIAQGVIRKVEELKGTLIPDDVRVTVTRDYG 361

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                 +       ++A + ++V   + L  +  LV   +I L + LTL +  L+G ++ 
Sbjct: 362 DTADEKANELLWHLLIAVVAVVVFLGLTLGLRPALVVSIAIPLTLALTLFISMLIGYSIN 421

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKN-QSVFCSLDMGFSRAYSTIFDSNITALI 472
             ++  ++  IG+ VD  I+V E          +    +         +    + +T + 
Sbjct: 422 RVTLFALIFSIGILVDDAIVVVENTYRHLTLRTRPHREASLFAVDEVGNPTILATLTVIA 481

Query: 473 ATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
           A + + F  G  +  +   + ++  I+MF ++ +   ++ +  +      + +  +    
Sbjct: 482 ALLPMAFVSG-LMGPYMRPIPVNASIAMFVSLLVAFIVIPWFCQTCYRPGVHMAGVDHES 540

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                    +   R     +S       +  +    L   I       + V      + S
Sbjct: 541 FEGSRSYRLYQ--RLLAPVLSHPLIAYLVLAVIALLLVGSIALFYTRAVVVKMLPFDNKS 598

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            ++  L        + +        L +      ++      +          +      
Sbjct: 599 ELQ--LVIDMPEGTTLEETARVTKALTQYVRTIPETRDYQAYVGTASPFNFNGLVRHYYL 656

Query: 653 NTEIVGPKISRELIRK 668
             +     I   L+ K
Sbjct: 657 RDQPYEADIQINLVAK 672



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 77/207 (37%), Gaps = 9/207 (4%)

Query: 616 NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
              +  Q           V+  V++    ++P              + E   + +  ++I
Sbjct: 318 TVAIAKQAGTNAVTIAQGVIRKVEELKGTLIPDDVRVTVTRDYGDTADEKANELLWHLLI 377

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           + +A+++++ +      AL     + L +  TL    L G   N   + A++  IG  V+
Sbjct: 378 AVVAVVVFLGLTLGLRPALVVSIAIPLTLALTLFISMLIGYSINRVTLFALIFSIGILVD 437

Query: 736 DKVVVYDRMRKNMKLY--TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
           D +VV     +N   +    +   R+    +++E    ++  ++    ++LPMA      
Sbjct: 438 DAIVVV----ENTYRHLTLRTRPHREASLFAVDEVGNPTILATLTVIAALLPMAFVSGLM 493

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAA 817
           G  +    +  +  + V+   +  +  
Sbjct: 494 GPYMRPIPVNASIAMFVSLLVAFIVIP 520



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/135 (11%), Positives = 48/135 (35%), Gaps = 5/135 (3%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   +  +  + L +   L    L G  F  T++   + L G  V + +++ D +    
Sbjct: 951  SFLTPVVIMAPIPLTLIGILPGHWLTGSYFTATSMIGFIALAGIIVRNSILLVDFI---Q 1007

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                  +S  + + ++        + T+ A  +    + +    +    A+ + FG+  +
Sbjct: 1008 HQEAEGVSLLEAVIRAGAIRTRPILLTAAALMVGAFVIIL--DPIFQGLAVSLLFGVGAS 1065

Query: 809  ASSSIFIAAPILLFI 823
               ++ +   +    
Sbjct: 1066 TVLTLVVIPVLYYLW 1080


>gi|294776762|ref|ZP_06742226.1| heavy metal efflux pump, CzcA family [Bacteroides vulgatus PC510]
 gi|294449417|gb|EFG17953.1| heavy metal efflux pump, CzcA family [Bacteroides vulgatus PC510]
          Length = 1027

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/617 (11%), Positives = 175/617 (28%), Gaps = 34/617 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATHVRRVRSSSTNGFSVVWVEFEWDTDIYLARQIVSEKLSLV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           + +L  +  K  +   +     +++     D      ++           ++  +    Q
Sbjct: 118 SEELPENVGKPTMGPQSSILGELLIIGLTSDTTSM--LDLRTLADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +     DP+R++    T A++       N +  G +               
Sbjct: 176 VAVLGGDIKEYQVLLDPARMKHYNVTLAEVMNVTRNMNQNANGGVIYEY----------- 224

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                     ++     +           I   E       ++    IG     +     
Sbjct: 225 -------GNEYIVRGVLSSHDVDQLSRSVIKTVEGVPVTLEDIADVKIGSQEPKLGTASE 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +   +       +   T +    L  + +     + ++    R       S    
Sbjct: 278 RGKPAVLLTVTKQPKTGTIELTEQLEAALKDLQKNLPADVHVSTDIFRQSRFIESSIGNV 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K +    A  V+IVLF+ +   +  +++  ++ L++I+++  L  +G T+   S+ G+ +
Sbjct: 338 KDSLYEGAVFVVIVLFLFLANVRTTVISLVTLPLSLIVSILTLHYMGLTINTMSLGGMAI 397

Query: 423 GIGLAVDSNILVNERIREE--------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +           + +SV   +          I +S +  +++ 
Sbjct: 398 AIGSLVDDAIVDVENVWKHLRENRLLPEEERKSVIEVVFNASKEVRMPILNSTLIIVVSF 457

Query: 475 VVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LFF  G   R      I   +++  S   A+++   +  +++   K K +        
Sbjct: 458 VPLFFLTGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGNNKGKGLPKEAFVAV 517

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI---DFKGGIQLGVLANRP 588
           ++                  +     + ++ L+    L         +G   + + +   
Sbjct: 518 WMKKHYRNALLWSLNHKSAVLGFTGGLFAVALVMFFTLGRSFLPSFNEGSFTINISSLPG 577

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           + L+         +   +S            R +            +E   +        
Sbjct: 578 ISLAESDKMGHRAEELLMSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSRQE 637

Query: 649 STIQNTEIVGPKISREL 665
                   +       +
Sbjct: 638 LVADVRAKLSTITGANI 654



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 90/303 (29%), Gaps = 16/303 (5%)

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
               R      +              G+    D     +  +     V +++       +
Sbjct: 206 MNVTRNMNQNANGGVIYEYGNEYIVRGVLSSHDVDQLSRSVIKTVEGVPVTLEDIADVKI 265

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              +             V L            + E ++  + ++                
Sbjct: 266 GSQEPKLGTASERGKPAVLLTVTKQPKTGTIELTEQLEAALKDLQKNLPADVHVSTDIFR 325

Query: 662 SRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
               I   I  V       +   +++           + ++ TL L +  ++      G+
Sbjct: 326 QSRFIESSIGNVKDSLYEGAVFVVIVLFLFLANVRTTVISLVTLPLSLIVSILTLHYMGL 385

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRM----RKNMKL-YTTSISFRDLIDKSINETLGR 771
             N  ++  +   IG  V+D +V  + +    R+N  L      S  +++  +  E    
Sbjct: 386 TINTMSLGGMAIAIGSLVDDAIVDVENVWKHLRENRLLPEEERKSVIEVVFNASKEVRMP 445

Query: 772 SVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA---APIL--LFIYDW 826
            + +++   +S +P+    G       +P+    +VA  +S  +A    P+L    + + 
Sbjct: 446 ILNSTLIIVVSFVPLFFLTGMEGRML-VPLGIAFIVALFASTVVALTLTPVLCSYLLGNN 504

Query: 827 RAK 829
           + K
Sbjct: 505 KGK 507



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 98/259 (37%), Gaps = 21/259 (8%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + ++ V   + ++    IS +N   +         +   SV       +  
Sbjct: 781  MIDTGDGQKIPVNYVADVVSAMGPNTISRENVKRKIVISANTSGRDLRSVVNDIQERIDA 840

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +                     SR L+    + +++    + + ++ +FK   A   +  
Sbjct: 841  QIKLPEGYHVEYGGQFESEQAASRTLMLTSFMSIVV----IFLLLYTQFK-NAAQSGVIL 895

Query: 700  LILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---RKNMKLYTTS 754
            L L +    G FAL     E ++ A+   ++L G +  + +++       R+        
Sbjct: 896  LNLPLALIGGVFALMITTGEISIPAIIGFISLFGIATRNGMLLISHYNMLREE------G 949

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAAS 810
            +  ++ I     + L   + T++++ ++++P+A      G+ I S  A  +  G++ +  
Sbjct: 950  MDLKESILHGSLDRLNPILMTALSSALALIPLAFRGDLPGNEIQSPMAKVILGGLLTSTF 1009

Query: 811  SSIFIAAPILLFIYDWRAK 829
             + FI  PI+  + + + K
Sbjct: 1010 LNAFII-PIVYELMNRKKK 1027


>gi|145629975|ref|ZP_01785757.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           R3021]
 gi|144984256|gb|EDJ91679.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           R3021]
          Length = 1026

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 9   RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 50

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 51  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 111 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 168 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 228 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKEND 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 268 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 328 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 388 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 448 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 496



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 86/250 (34%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 764  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGTSSGDAIAWLQQQAND 823

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 824  NLPQ-GYTYDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 878

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF++ G   N+ +   ++TL+G      +++ +  ++    Y  
Sbjct: 879  VPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLNYGK 938

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVVAAS 810
            +    + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ +   
Sbjct: 939  TR--IEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLSIGTI 996

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 997  FTLFVLPVVY 1006



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 301 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 474

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 475 VALTLSPMMSSKLLKSNAKP 494


>gi|68535213|ref|YP_249918.1| RND superfamily drug exporter [Corynebacterium jeikeium K411]
 gi|68262812|emb|CAI36300.1| putative drug exporter of the RND superfamily [Corynebacterium
           jeikeium K411]
          Length = 789

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 76/687 (11%), Positives = 183/687 (26%), Gaps = 46/687 (6%)

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
           +     ++R    +P     + L   +    K++                     + +  
Sbjct: 3   SSWGDVAYRFRRLIPLVIIAAILVLYVVAGLKLADRMSQEGWDDPNSQSTKAAQIEQEVF 62

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                  V +        +A  D         I                   +  A + +
Sbjct: 63  GRDANGDVILMVTGDKPGSATSDEVKQSITQQIEQLRKNHPDEIGGVTSYFNRGPAAMAN 122

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                A             +     IE      +             V +       G  
Sbjct: 123 PDGTAAFASIGLKGIEDDVLINFRKIEDDLRAISAPGVDVKIAGATAVSDSLDEGMAGDI 182

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              +       GL+L+++F  ++     L+      L  +  LA+L+             
Sbjct: 183 HRAEVYALPAVGLLLLIVFGGLIAAFMPLLVGGLSILGSMGVLAILASFTQINVFAQSVV 242

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +LG+GLA+D  + +  R REE  +      ++    + A  T+  S     +A   LF 
Sbjct: 243 TLLGLGLAIDYGLFMVSRFREEMAEGHDTRTAVRNTTATAGKTVVFSAAMVAVALSGLFI 302

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDINPLSRFFLIP 535
           F    ++  A     ++ ++   +++++ ++   +     ++   K        +   I 
Sbjct: 303 FPQAFLKSVAFGAISAVGLAALLSVAVLPSIFAMLGPNIDKWSFKKKQSRRRSEQVEGIW 362

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLL---------FTHGLNYGIDFKGGIQLGVLAN 586
             I    MR         +   +     +          T+            +      
Sbjct: 363 GRIPAFAMRHSKLFTVCIVGGMLLMAVPIAGIKLGGMNETYLPPSNQTRVNQEEFTEKFP 422

Query: 587 RPVD-------------LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
           +                ++ V     ++      FQ     K+ +  L     D     R
Sbjct: 423 QFRTDPIKLVIEGDSKTVAAVYKEANAVPGLTAPFQVSRPTKDNVTVLSTGIADRKDNDR 482

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYF 692
           ++  +++ I+       +  T  +  +    L  K    ++   +   + + + F     
Sbjct: 483 IVNSLEE-ISVDGANVYVAGTPALEVESIDALFEKLPWMLLYIVLVSFVLMAMIFGSLII 541

Query: 693 ALGAITTLILDITKTLGFFALFGI-------------EFNLTAVAAVLTL-IGYSVNDKV 738
              A+   IL    TLG   L  +                   +  ++ +  G S + +V
Sbjct: 542 PAKAVIMNILGTGATLGLLTLIFVDGHGAGMFNFTAGPLTSPVLVLIIAIVFGLSTDYEV 601

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            +  RM +         S    I      T       ++   +           ++   A
Sbjct: 602 FLVSRMVE---ARARGASTDQAIRFGTATTGSIITAAALIMIVVCGAFGFSSIVMMKYIA 658

Query: 799 IPMAFGIVVA-ASSSIFIAAPILLFIY 824
             M   +++      + +   ++  + 
Sbjct: 659 FGMVIALLLDATIIRMLLVPSVMHLLG 685


>gi|309751437|gb|ADO81421.1| Multidrug efflux system protein AcrB [Haemophilus influenzae R2866]
          Length = 1032

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 15  RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 56

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 57  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 116

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 117 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 174 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSAPAVMSALSANNVQTAAGNDNGYYVSYRN 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 234 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKESD 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 274 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 334 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 394 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 453

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 454 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 502



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 74/210 (35%), Gaps = 16/210 (7%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +      S      L+               ++      +    L    I+ V+I    +
Sbjct: 809  VPMPGTSSGDAIAWLQQHATDNLPQGYTFDFKSEARQLVQEGNALTTTFILAVVI----I 864

Query: 681  LIYIWIRFK-WYFALGAITTLILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             + + I+F+     +  + ++ L +         L FF++ G   N+ +   ++TL+G  
Sbjct: 865  FLVLAIQFESIRDPMVIMISVPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLI 924

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGS 792
                +++ +  ++         +  + I  +    L   + T+ A    ++P +   G  
Sbjct: 925  TKHGILMCEVAKEE--QLNHGKTRIEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAG 982

Query: 793  VIGSFAIPMAF--GIVVAASSSIFIAAPIL 820
             +  F+I +    G+ +    ++F+   + 
Sbjct: 983  AVSRFSIGIVIVAGLSIGTIFTLFVLPVVY 1012



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 307 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 364 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 420

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 421 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 480

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 481 VALTLSPMMSSKLLKSNAKP 500


>gi|16272833|ref|NP_439056.1| acriflavine resistance protein [Haemophilus influenzae Rd KW20]
 gi|260579986|ref|ZP_05847816.1| acriflavine resistance protein [Haemophilus influenzae RdAW]
 gi|2833482|sp|Q57124|Y895_HAEIN RecName: Full=Uncharacterized transporter HI_0895
 gi|1573914|gb|AAC22555.1| acriflavine resistance protein (acrB) [Haemophilus influenzae Rd
           KW20]
 gi|260093270|gb|EEW77203.1| acriflavine resistance protein [Haemophilus influenzae RdAW]
          Length = 1032

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 15  RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 56

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 57  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 116

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 117 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 174 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 234 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKEND 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 274 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 334 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 394 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 453

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 454 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 502



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 83/250 (33%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 770  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGISSGDAIAWLQQQATD 829

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +            +  + +   +   +     + I + + + I+F+     +  + +
Sbjct: 830  NLPQGYTFDFKSEARQLVQEGNALAVTFAL-----AVIIIFLVLAIQFESIRDPMVIMIS 884

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF++ G   N+ +   ++TL+G      +++ +  ++       
Sbjct: 885  VPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEE--QLNH 942

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVVAAS 810
              +  + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ +   
Sbjct: 943  GKTRIEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLSIGTI 1002

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 1003 FTLFVLPVVY 1012



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 307 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 364 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 420

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 421 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 480

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 481 VALTLSPMMSSKLLKSNAKP 500


>gi|323493673|ref|ZP_08098793.1| cation efflux system protein cusA [Vibrio brasiliensis LMG 20546]
 gi|323312013|gb|EGA65157.1| cation efflux system protein cusA [Vibrio brasiliensis LMG 20546]
          Length = 1045

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 66/619 (10%), Positives = 159/619 (25%), Gaps = 40/619 (6%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD 75
             G L ++ N    + +D  P       I                     V   +     
Sbjct: 24  IFGGLYSVKN----TPVDAIPDLSDVQVI---------IKTSYPGQAPQVVEDQVTYPLT 70

Query: 76  ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL 135
                +              + + + F D         +V  +L  V   L    K  L 
Sbjct: 71  TAMLAVPGAETVRGYSFFGDSYVYIIFNDDTDMYWARSRVLEYLSQVAPNLPASAKPTLG 130

Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195
              T                     +           ++   +   +      ++ Q   
Sbjct: 131 PDATGVGWVYSYV-LQDKTGQHDLAQLRSLQDWFLKYELQTVDGVSEVATVGGMVKQYQV 189

Query: 196 EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLN 255
           + DP++LR    T  +++      N      +  V            +    +I      
Sbjct: 190 QIDPAKLRAYDLTLQQVNMAIQNGNQETGASVVEVAEAEHMVRTTGYLSSVEDIEA---- 245

Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSG 315
                         + +     G         D    P        +         +   
Sbjct: 246 --------------LPLKVTAKGTPLLLGDIADINIGPQMRRGISELNGEGEAVGGVIVM 291

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           +   + +  I         L+         +           +        A    +V I
Sbjct: 292 RFGENASQVIANVKDKLNDLQRSLPEGVEIVPTYDRSTLIDSAVENLWKKLAEEFIVVAI 351

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
           V  + + + +  LV   S+ + ++    ++   G    + S+ GI + IG  VD  I++ 
Sbjct: 352 VCALFLFHIRSSLVIALSLPVGILSAFIIMHWQGINANIMSLGGIAIAIGAMVDGAIVMI 411

Query: 436 ERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGF 488
           E + +   +    +++ +  +        + +F S +   ++ V +F      G      
Sbjct: 412 ENVHKHIERTPLTDKNRWQVIGDAAQEVGAPLFFSLLIITLSFVPVFALEGQEGKMFSPL 471

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA-RF 547
           A T   ++  +   AI++V  +M + IR K +             +   +    ++  + 
Sbjct: 472 AYTKTYAMASAAGLAITLVPVLMGYFIRGKVLPEDKNPINKGLIALYKPMLNVSLKYPKS 531

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
             +   +L +                  +G +         + +   R  L+      ++
Sbjct: 532 VLLMAFVLMASAYYPTTKLGSEFIPPLDEGDLMYMPTTYPGISIGKARELLQQTNKLIMT 591

Query: 608 FQNFDGEKNFLVRLQYQPG 626
               +     + R +    
Sbjct: 592 VPEVETAWGKIGRAETATD 610



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/249 (12%), Positives = 75/249 (30%), Gaps = 20/249 (8%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++  ++  D               +          + V +  +    ++   +      
Sbjct: 792  ADVADIRYEDGPPMIKTENARPNGWVFVDIDGRDLGSYVADAQQAVAEQLALPAGYSLVW 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG--FFAL 713
                +       +  V V I+   +++ ++  F+       I  L L +    G      
Sbjct: 852  SGQYEYMERAKERLGVVVPITIAIIMLLLYFSFR-RVGEVMIIMLTLPLAMVGGLWLMHY 910

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD------------LI 761
             G  F++      + L G +V   V++   +  N   + T +S  +             I
Sbjct: 911  LGYNFSIAVGVGFIALAGVAVEIGVIML--VYLNQAWHYTKLSASEKQQPLELEDLTNAI 968

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     +   + T +   I ++P+      G  V+   A PM  G+  A   ++ +   
Sbjct: 969  RQGAGLRVRPVMMTVLTVIIGLVPIMYGQGTGSEVMQRIAAPMIGGMASALLLTLLVLPA 1028

Query: 819  ILLFIYDWR 827
            I        
Sbjct: 1029 IFKLWKQRE 1037



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 79/241 (32%), Gaps = 11/241 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
           N+       IS  N +GE    V +     ++      ++     +   +P         
Sbjct: 266 NIGPQMRRGISELNGEGEAVGGVIVMRFGENASQVIANVKDKLNDLQRSLPEGVEIVPTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +    I + I      F    +L    +L + I          G
Sbjct: 326 DRSTLIDSAVENLWKKLAEEFIVVAIVCALFLFHIRSSLVIALSLPVGILSAFIIMHWQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLG 770
           I  N+ ++  +   IG  V+  +V+     +N+  +       D     +I  +  E   
Sbjct: 386 INANIMSLGGIAIAIGAMVDGAIVMI----ENVHKHIERTPLTDKNRWQVIGDAAQEVGA 441

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              ++ +   +S +P+    G     F+ P+A+    A +S+  +A  ++  +  +  + 
Sbjct: 442 PLFFSLLIITLSFVPVFALEGQEGKMFS-PLAYTKTYAMASAAGLAITLVPVLMGYFIRG 500

Query: 831 A 831
            
Sbjct: 501 K 501


>gi|254509488|ref|ZP_05121555.1| RND transporter, HAE1/HME family, permease protein
           [Rhodobacteraceae bacterium KLH11]
 gi|221533199|gb|EEE36187.1| RND transporter, HAE1/HME family, permease protein
           [Rhodobacteraceae bacterium KLH11]
          Length = 1254

 Score =  123 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/545 (11%), Positives = 140/545 (25%), Gaps = 52/545 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               ++   ++   IG              +  P                   L + V  
Sbjct: 11  RARMVLAFIAISLVIGGFA-----YVGLPKEGEPDIEIPA-------------LFVSVSF 52

Query: 63  DDFVNGFLQMYS----DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                   +       +   + L        +  +    I L F     K  I   V   
Sbjct: 53  PGISAEDSENLLIKPMETELADLDGLKEMTATAAESYAGIALEFDFGWDKTAITADVRDA 112

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +    +      ++  L      E  IV+                  + +   D++   +
Sbjct: 113 MNSAQADFPEGAEQYTLTEINFSEFPIVIVNLTGPVPERTMAR----VAKDLQDELEALD 168

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
           S ++   +      L    DP RL     T  ++       N               S  
Sbjct: 169 SVLEAGIAGNRDEMLEVVIDPLRLEAYNVTADELINVVQNNNQLIAAGEVETEQGTFSVK 228

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                +   ++ G+ +                       G R         I        
Sbjct: 229 IPSSFKTAQDVYGLPIKV--------------------NGDRVVTLGELARINYTFEDRE 268

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI----KLNIVEERNVGA 354
                            +   +   T+       A  +                      
Sbjct: 269 GTARFNGEPTVALQVVKRKGFNLIDTVAQVKTTIAEAQTKWPSELQAAVDVGTSNDQSRI 328

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
                S  +G+      LV+IV+   +      L+  F+I  + +L  A L+++G +++ 
Sbjct: 329 VGSMVSQLEGSVLTAIALVMIVVLASLGTR-AALLVGFAIPTSFLLCFAFLAVMGVSISN 387

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIAT 474
             + G++L +G+ VD  I+V E   +  ++      +      R +  I  S  T L A 
Sbjct: 388 IVMFGLILAVGMLVDGAIVVVEYADKRIKEGVGPMHAYVEAAQRMFWPIVSSTATTLCAF 447

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           + + F+ G         + ++++  +  ++ +    +  +       S   +  S +   
Sbjct: 448 LPMLFWPGIPGEFMG-MLPVTLIFVLSASLIVALIYLPVMGGVSGRMSRSFDRSSNWLRA 506

Query: 535 PDCIA 539
                
Sbjct: 507 RFPWW 511



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/261 (11%), Positives = 86/261 (32%), Gaps = 16/261 (6%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + V  +R V L  +     + +  + + +        L  ++ +  + +     ++   
Sbjct: 243 PIKVNGDRVVTLGELARINYTFEDREGTARFNGEPTVALQVVKRKGFNLIDTVAQVKTTI 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIV----GVIISAIAMLIYIWIRFKWYFALG 695
            +     P       ++        ++   +      V+ +   ++I +        AL 
Sbjct: 303 AEAQTKWPSELQAAVDVGTSNDQSRIVGSMVSQLEGSVLTAIALVMIVVLASLGTRAALL 362

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRKNMKLY 751
               +         F A+ G+  +   +  ++  +G  V+  +VV +    R+++     
Sbjct: 363 VGFAIPTSFLLCFAFLAVMGVSISNIVMFGLILAVGMLVDGAIVVVEYADKRIKE----- 417

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
              +       ++        V ++     + LPM  W G   G F   +   ++   S+
Sbjct: 418 --GVGPMHAYVEAAQRMFWPIVSSTATTLCAFLPMLFWPGIP-GEFMGMLPVTLIFVLSA 474

Query: 812 SIFIAAPILLFIYDWRAKNAR 832
           S+ +A   L  +     + +R
Sbjct: 475 SLIVALIYLPVMGGVSGRMSR 495



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 85/272 (31%), Gaps = 25/272 (9%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            G D        V A    +     +            +    E    +R     G++   
Sbjct: 919  GPDGAELRLATVRAVAEDENPSGTTITSLDGTEFELVKLAGAENVGALRTAIDDGEASFA 978

Query: 632  TRVLEMVKKKITEIVPLSTIQNT--EIVGPKISRELIRKGIV--GVIISAIAMLIYIWIR 687
                      +TE +  +    +           +   +  +    + +   M + +  +
Sbjct: 979  LINPNERIAVLTEWLETNPFARSISWEWTGDQEDQAESQAFLSSAFLAALGLMFVILLAQ 1038

Query: 688  F-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIGYSVNDKVVVYDRMR 745
            F  +Y ++  +  ++L  T  L    +    F++      ++ L G  VN+ +V+ D  +
Sbjct: 1039 FNSFYNSVLVLLAVVLSTTGVLIGMMVMQQPFSIIMTGTGIVALAGIVVNNNIVLIDTYQ 1098

Query: 746  KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-------AVWGGSVI---- 794
            +  +  +      D I ++    +   + T++     + PM        + GG  I    
Sbjct: 1099 EYSRYMSR----IDAIVRTAEARIRPVLLTTLTTMAGLTPMMFGLSLDFIGGGYSIDSPT 1154

Query: 795  ----GSFAIPMAFGIVVAASSSIFIAAPILLF 822
                   A  + FG+  A   ++ +   +L  
Sbjct: 1155 ALWWKQLATAVVFGLGTATVLTLIVTPSLLAL 1186


>gi|256829561|ref|YP_003158289.1| acriflavin resistance protein [Desulfomicrobium baculatum DSM 4028]
 gi|256578737|gb|ACU89873.1| acriflavin resistance protein [Desulfomicrobium baculatum DSM 4028]
          Length = 1043

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/469 (13%), Positives = 143/469 (30%), Gaps = 33/469 (7%)

Query: 55  HLVLEVDEDDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQ--NKITLSFADSRFKEN 110
           ++ +  D +      ++      L   LK   G+   + +     + I + F  S   ++
Sbjct: 44  YIFVTTDYEGVAPEDMEKLITVPLERKLKGLEGVEELTSQSDDGTSTIAIKFLPSEDIDD 103

Query: 111 IADKVTLFLQGVNSKLNVDP-KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQ 169
              KV   +   +  L  D     L+      ++ I+    +    +      + +    
Sbjct: 104 ALQKVRDKVDQASGDLPSDLEDDPLVSEMNFSDMPIIQVVLSGPFSLKRLKVFAED---- 159

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
             D+       +       +  ++  E D  R+       A M                 
Sbjct: 160 LEDRFESISGVLDARIIGGLEREIHVEFDLDRVGAYKVPFAAMLQSV------------- 206

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
                  +     +       G          D ++   +  I       +  +      
Sbjct: 207 -------ERGNVNMPGGSMDIGDMRYQVRVPEDFRSPAEIDSIVAFVRDGKPVYLRDVAA 259

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           I      +     L            ++  +     +    +   +R    P     +  
Sbjct: 260 IRDHYKDITTLSRLNGENAVTLQVIKRSGENIIDINDRVAAVVEEMRLLLPPTLTISLTA 319

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                     +  +        LVL V+ + +       V+  +I +++++T ALL LL 
Sbjct: 320 DMAEDIRNMVADLENNILTGLILVLGVVLIFIGGRSAVFVSV-AIPVSMLITFALLRLLD 378

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            TL +  +  ++L +G+ VD+ I++ E I    ++ +  F +   G S     +  S +T
Sbjct: 379 ITLNMVVLFSLILALGMLVDNGIVIVENIYRHMQEGKDRFQAALDGTSEVAWPVITSTLT 438

Query: 470 ALIATVVLFFFGGGAVRGFAI---TMGLSILISMFTAISIVRAMMIFII 515
            + A   + F+ G      +    T+ L++  S+F A+ I   +     
Sbjct: 439 TVGAFFPMIFWPGIMGGFMSFLPKTVILALAGSLFVALVINPVLSARYQ 487



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 87/234 (37%), Gaps = 4/234 (1%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V   +PV L  V +  +  +      +        L  ++    + +     +  V +++
Sbjct: 246 VRDGKPVYLRDVAAIRDHYKDITTLSRLNGENAVTLQVIKRSGENIIDINDRVAAVVEEM 305

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             ++P +   +      +  R ++      ++   I +L  + I      A+     + +
Sbjct: 306 RLLLPPTLTISLTADMAEDIRNMVADLENNILTGLILVLGVVLIFIGGRSAVFVSVAIPV 365

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            +  T     L  I  N+  + +++  +G  V++ +V+ + +    +             
Sbjct: 366 SMLITFALLRLLDITLNMVVLFSLILALGMLVDNGIVIVENI---YRHMQEGKDRFQAAL 422

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
              +E     + +++    +  PM  W G ++G F   +   +++A + S+F+A
Sbjct: 423 DGTSEVAWPVITSTLTTVGAFFPMIFWPG-IMGGFMSFLPKTVILALAGSLFVA 475



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 61/176 (34%), Gaps = 5/176 (2%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V              ++  +  K+  +        +     +  R+         +
Sbjct: 799 DQKRVVTVSSDVSGRLANDIIRELDGKLGALAWPRGYTYSFAGEQEEQRKAQEFLSEAFV 858

Query: 675 ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIGY 732
            +   + + +  +F      L  +T+++L          + G  F +      V++L G 
Sbjct: 859 AAIFLIFMVLVAQFNSMVTPLIVLTSVVLSFIGVFTGLLITGTAFGIIMTGVGVISLAGV 918

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            VN+ +V+ D   + +K     +  R+ + ++        + T++   + +LPMA+
Sbjct: 919 VVNNAIVLID-YFEQLKA--KGMQTREALLEAGLTRFRPVLLTAVTTILGLLPMAL 971


>gi|85714563|ref|ZP_01045550.1| heavy metal efflux pump CzcA [Nitrobacter sp. Nb-311A]
 gi|85698448|gb|EAQ36318.1| heavy metal efflux pump CzcA [Nitrobacter sp. Nb-311A]
          Length = 1039

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/584 (12%), Positives = 173/584 (29%), Gaps = 45/584 (7%)

Query: 26  FLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVNGFLQMYSDELRSFLKK 83
            L +  +D FP                  +++ E +      V   +    +   + +  
Sbjct: 30  VLTRISIDVFPDINRPT-----------VNILTEAEGLAPQEVEQLVTFPIETSMNGMPG 78

Query: 84  EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
                       + + + F            V+  L  +  +L       +   T+    
Sbjct: 79  VIRVRSVSGVGLSVVYVEFDWGVDVYRARQFVSERLALIREQLPTSVNPRMGPVTSIMGE 138

Query: 144 SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLR 203
            ++++     +  + A++           ++       Q +     + Q     +   ++
Sbjct: 139 IMLIALT--TEGKASAMDVREIADFVVRPRLLAIPGVAQVIPIGGEVRQYRVTPNVMTMQ 196

Query: 204 QLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDP 263
            L  T  ++         +  G             N  L     ++    + G       
Sbjct: 197 GLGVTHEQIERAVTRFGTNTGGGFIDQHGREFLIRNVGLTRKIDDLGNTVVAGLDHQPIL 256

Query: 264 KTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNF 323
                 VD +                   P     D      P +  ++    A  +   
Sbjct: 257 LKQVARVDFA-------------------PRVKRGDAGYNGKPAVIVSVQKQPAADTVAL 297

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
           T E    L  +       I +  V+ R       S    +      + +V ++LF+ ++ 
Sbjct: 298 TREIEATLRDLQLTMPAGISVTNVQFRQATFIETSIRNVERVLVEASIVVALILFVFLVN 357

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENR 443
            +   V+  +I +++++T  +    G T+   ++ G+ + IG  VD  ++  E I    R
Sbjct: 358 ARATFVSLTAIPISILVTALVFFAFGLTINTMTLGGLAIAIGELVDDAVVDVENILRRLR 417

Query: 444 KNQSVF------CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGL 494
           +N++          +        S I  + +  ++  V LF      G       I   +
Sbjct: 418 ENRAQRNPRPVLDVIAQASQEVRSGIVYATMITVLVFVPLFALPGTEGRLFTPLGIAYIV 477

Query: 495 SILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI--AIQFMRARFWGVGI 552
           SIL S+ T++++   +  +++  K       + + R     +    A  F R R     +
Sbjct: 478 SILASLLTSVTVTPVLSYYLLAGKAHSRARDSIVVRTLKQGNRRLLAWAFDRWRLVLGAV 537

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
           SI   +     +           +G + L +  N  + L     
Sbjct: 538 SIAVLVAGYAAVMLPRRFLPPFNEGTLVLSLQYNPGISLVESNR 581



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/159 (18%), Positives = 64/159 (40%), Gaps = 12/159 (7%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++++ I  +  +  R        ++T + + I  T   F  FG+  N   +  +   IG
Sbjct: 344 SIVVALILFVFLVNAR----ATFVSLTAIPISILVTALVFFAFGLTINTMTLGGLAIAIG 399

Query: 732 YSVNDKVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             V+D VV    +  R+R+N +         D+I ++  E     VY +M   +  +P+ 
Sbjct: 400 ELVDDAVVDVENILRRLREN-RAQRNPRPVLDVIAQASQEVRSGIVYATMITVLVFVPLF 458

Query: 788 VWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFI 823
              G+    F    I     I+ +  +S+ +   +  ++
Sbjct: 459 ALPGTEGRLFTPLGIAYIVSILASLLTSVTVTPVLSYYL 497



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 84/236 (35%), Gaps = 6/236 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              L  +   D   Q         + +          + +   +++ + EI          
Sbjct: 786  KELAKVIETDGPNQIQKEGTQRRIVVYGNGDGRRDMSEIASDIRRALAEISFPQGYTTNL 845

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGFFALF 714
                K   E   +  V  ++S   + I ++ R++    A   +  + L +  ++    + 
Sbjct: 846  EGAFKAQEEATWRIGVLSLVSLSIIFIVLYGRYRSAALAFIIMGGIPLALIGSVIALTIT 905

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ ++   +TL G S  + ++       N+ ++      R LI +   E +   + 
Sbjct: 906  GEPLSVASMIGFITLAGISARNGILKISHYV-NLAVHGGERFGRRLIVRGSLERVTPVLM 964

Query: 775  TSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            T++ A +++ P+ +     G  ++   A+ +  G++ A +    +   + L     
Sbjct: 965  TALCAGLALTPLLLSADEPGREILHPVAVTIFGGLLSATALDTVVTPILFLLFGRK 1020


>gi|170692764|ref|ZP_02883926.1| acriflavin resistance protein [Burkholderia graminis C4D1M]
 gi|170142420|gb|EDT10586.1| acriflavin resistance protein [Burkholderia graminis C4D1M]
          Length = 1067

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/636 (9%), Positives = 160/636 (25%), Gaps = 49/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  +I       A P  L  + +D  P                   ++   
Sbjct: 8   LKRPYTFIVMAILIVL-----ATPFVLFTTPVDVLPEINIPV-----------VSIIWT- 50

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
             +      +      +        +        +       + +    +   +    + 
Sbjct: 51  -YNGLSAEDMAHRIASVNERSLTTTVNDIEHIESNSLAGITILKVFLQPNANIQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    ++       L+++ +   I ++    +  ++     + +   +     Q+ 
Sbjct: 110 VAVEQAQLKQMPPGATPPLVISYSASSIPVIQLGLSSTKLSEQ--QLNDTALNFLRPQLV 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + +   L     T   +       N         +     
Sbjct: 168 TIPGAAVPYPYGGKSRLISVDLNTRALLAKGLTPLDVVSAFNAQNLILPTGTAKIGPKEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +            +                     DI    +     +     ++    +
Sbjct: 228 TINMNGSPSTLEGL--------------------NDIPVRTVNGATTYLREVAHVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    + T   L    RA   P              
Sbjct: 268 PQTNIVRQDGHRGVLISVLKNGSASTLSIVNTLHGLLPAARAALPPDLNITALFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         + A L   ++ + +   +   +   SI L+++ +L  L  LG T+ + 
Sbjct: 328 KAAVQGVVHEAVVAAALTAAMILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHMGTNLHDAILEGAGEIAIPALVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + ++ +             F 
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYILSRTLVPTLAMLLMGHAHKPK-AAAKPGLFQ 506

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I       F R R   + I     +              +       LG      VD  
Sbjct: 507 RIYRRFDNGFERMRAAYIVILSSLLVRRRRFGSIFLGFCVVSMGLAFVLGEDFFPSVDAG 566

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P + 
Sbjct: 567 NIRLHMRAPTGTRIEETARLADEVEKVIREVVPANE 602



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 77/224 (34%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V   Y   D      V   V K + +        +   V  ++         +G+ 
Sbjct: 827  NIRPVIDLYVSVDKRDLGSVANQVDKLVEKARATLPRGSQITVRGQVQTMRTSYLGLGLG 886

Query: 675  ISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +L+Y+ I      W   L  ++ L   +   +    L G   ++ A+   +  +G
Sbjct: 887  VAMAIVLVYLLIVVNFQSWVDPLIIVSALPAALAGIVWMLFLTGTHLSVPALTGAIMTMG 946

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++    R   +  +          ++    +   + T+ A  I ++PMA+   
Sbjct: 947  VATANSILMVAFAR---QRLSAGAPPLTAALEAGASRIRPVLMTAFAMIIGMIPMALGLG 1003

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G          +  G++ A  S++F    +   I+   A+  R
Sbjct: 1004 EGAEQNAPLGRAVIGGLLFATVSTLFFVPLVFAGIHTRLARRHR 1047



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 4/142 (2%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +     W        ++ L I  +L      G   N+  +  +   +G  V+D  V  
Sbjct: 348 MILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIMTLGGLALAVGILVDDATVTI 407

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           + +    +      +  D I +   E    ++ +++   I  +PM    G     F +P+
Sbjct: 408 ENI---ERHLHMGTNLHDAILEGAGEIAIPALVSTLCICIVFVPMFFLTGVARYLF-VPL 463

Query: 802 AFGIVVAASSSIFIAAPILLFI 823
           A  +V A  +S  ++  ++  +
Sbjct: 464 AEAVVFAMLASYILSRTLVPTL 485


>gi|149908499|ref|ZP_01897161.1| putative cation efflux system transmembrane protein [Moritella sp.
           PE36]
 gi|149808333|gb|EDM68270.1| putative cation efflux system transmembrane protein [Moritella sp.
           PE36]
          Length = 1039

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/529 (12%), Positives = 142/529 (26%), Gaps = 39/529 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  +V+L +++  I     + N    + +D  P       I                  
Sbjct: 11  NNRIMVLLATLVILIYGSYVIKN----TPIDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + FAD         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLSVPGAKTVRGYSFFGDSYVYVIFADGTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L    K  L    T                     +           ++       +
Sbjct: 118 TPNLPSTAKPALGPDATGVGWVYSY-ALTDTSGNHDLSQLRSIQDWFLKYELQTVPGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +LR      + ++      N      +  +            
Sbjct: 177 VATVGGMVKQYQIIVDPDKLRSYQLPLSLITKAIKDGNQEAGASVIEMGEAEYMVRANGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++                    + +     G         D +  P        +
Sbjct: 237 ISSIDDLKN------------------IPLKLSSTGTPLLLGDVADIVLGPQMRRGVSEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    I         L+A        +           +    
Sbjct: 279 NGEGEVVGGIIVMRYNENAREVIAAVKAKLQTLQASLPEGVEIVPTYDRSTLIDNAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V++V  + + + +  LV   S+ + +++   ++S  G    + S+ GI +
Sbjct: 339 YLKLLEEFLVVIVVCALFLFHIRSSLVVLVSLPIGIMVAFIIMSWQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  VD  I++ E + +   K    N + +  +    S     +F S +    + V +F
Sbjct: 399 AIGAMVDGAIVMVENVHKHIEKTPLTNTNRWQVIAKAASEVGPALFFSLLIITFSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                 G      A T   S+  +   A+++V  +M + IR K +    
Sbjct: 459 VLEGQEGKMFAPLAFTKTYSMAAAAGLAVTLVPVLMGYFIRGKVLPEHK 507



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 94/284 (33%), Gaps = 7/284 (2%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                            Y         + +  +      ++    + +    +     + 
Sbjct: 219 ASVIEMGEAEYMVRANGYISSIDDLKNIPLKLSSTGTPLLLGDVADIVLGPQMRRGVSEL 278

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V             R +    K   + +  S  +  EIV       LI   +  +
Sbjct: 279 NGEGEVVGGIIVMRYNENAREVIAAVKAKLQTLQASLPEGVEIVPTYDRSTLIDNAVENL 338

Query: 674 II-----SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +       + +++     F    +L  + +L + I       +  GI  N+ ++  +  
Sbjct: 339 YLKLLEEFLVVIVVCALFLFHIRSSLVVLVSLPIGIMVAFIIMSWQGINANIMSLGGIAI 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMA 787
            IG  V+  +V+ + + K+++    + + R  +I K+ +E      ++ +    S +P+ 
Sbjct: 399 AIGAMVDGAIVMVENVHKHIEKTPLTNTNRWQVIAKAASEVGPALFFSLLIITFSFVPVF 458

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           V  G     FA P+AF    + +++  +A  ++  +  +  +  
Sbjct: 459 VLEGQEGKMFA-PLAFTKTYSMAAAAGLAVTLVPVLMGYFIRGK 501



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 83/283 (29%), Gaps = 13/283 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 + + +       I+    + L       + L  V +         I  +N     
Sbjct: 756  LERYPVNIRYPQAYRDSIEQMRLLPLVTPQGARIALGDVANIYIEDGAPMIKTENARPNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V +  +   S        + ++ +       T         +    L     V +  
Sbjct: 816  WIYVDIDGRDLGSYVIDAQQAVAEQLVLPAGYSITWSGQYEYMQRAKATLS----VVIPA 871

Query: 676  SAIAMLIYIWIRFKWYFALGAITT-LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            +   +++ +++ F+    +  I   L L +   +    L    F++      + L G +V
Sbjct: 872  TLAIIVLLLYLAFRRVGEVLLILATLPLAMIGGIWLLYLLNYNFSIAVGVGFIALAGVAV 931

Query: 735  NDKVVVYDRMRKNMK-----LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
               V++   + ++++        T    +  +       +   + T     I ++P+   
Sbjct: 932  EIGVIMLVYLNQSLESTLATGQLTKAKLQQAVMDGAGLRVRPVMMTVATVIIGLIPIMYG 991

Query: 789  --WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
               G  V+   A PM  G+  A   ++ +             K
Sbjct: 992  DGTGSQVMQRIAAPMIGGMGSAVILTLLVLPASFYLWKSVSLK 1034


>gi|145638284|ref|ZP_01793894.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           PittII]
 gi|145272613|gb|EDK12520.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           PittII]
          Length = 1026

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 9   RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 50

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 51  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 111 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 168 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSAPAVMSALSANNVQTAAGNDNGYYVSYRN 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 228 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKESD 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 268 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 328 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 388 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 448 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 496



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/210 (12%), Positives = 74/210 (35%), Gaps = 16/210 (7%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +      S      L+               ++      +    L    I+ V+I    +
Sbjct: 803  VPMPGTSSGDAIAWLQQHATDNLPQGYTFDFKSEARQLVQEGNALTTTFILAVVI----I 858

Query: 681  LIYIWIRFK-WYFALGAITTLILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             + + I+F+     +  + ++ L +         L FF++ G   N+ +   ++TL+G  
Sbjct: 859  FLVLAIQFESIRDPMVIMISVPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLI 918

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGS 792
                +++ +  ++         +  + I  +    L   + T+ A    ++P +   G  
Sbjct: 919  TKHGILMCEVAKEE--QLNHGKTRIEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAG 976

Query: 793  VIGSFAIPMAF--GIVVAASSSIFIAAPIL 820
             +  F+I +    G+ +    ++F+   + 
Sbjct: 977  AVSRFSIGIVIVAGLSIGTIFTLFVLPVVY 1006



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 301 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 474

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 475 VALTLSPMMSSKLLKSNAKP 494


>gi|126736704|ref|ZP_01752443.1| multidrug efflux transporter, AcrB/AcrD/AcrF family protein
           [Roseobacter sp. CCS2]
 gi|126713819|gb|EBA10691.1| multidrug efflux transporter, AcrB/AcrD/AcrF family protein
           [Roseobacter sp. CCS2]
          Length = 1085

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/634 (10%), Positives = 167/634 (26%), Gaps = 43/634 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
                +   M+  +G+L A            FP                   +       
Sbjct: 12  PVAAWLSMIMLVGLGVLTA-----TTLPQKTFPEFALDAV---------SISVSYPGASP 57

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   +    ++    +        ++ + +  +T++F D    +   D+V   +  ++
Sbjct: 58  SEIQDSIVRPIEDELGGVDGIDDITANISEGRGGVTVTFLDGEDIDAKLDEVKTEIDAID 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                D +  ++V        + ++ +          +   E  R+  +++   +     
Sbjct: 118 -VFPEDAEDPVVVRADNSTRVLEIALHGAASE-----QVLKEEARRLKNELTAIDGISFV 171

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             ++    ++  E D   LR    T  +++                         +  L 
Sbjct: 172 EVANVRDYEISIEIDRDTLRAYGLTLGEVAQVV-------------------GLNSLELP 212

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
              +E   + +   T   +         +        + F      +             
Sbjct: 213 GGSIETDSVSIPIRTLGRNYTRTDFENIVIRSSDTGAQVFLRDIATVNDGFEDSDLSSSF 272

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                                ++ A          SL   +     +N    L S     
Sbjct: 273 NGASSVSVNVFRVGDEQILRIVDLAEDHLRTQFRPSLEQGIEATIWQNEATQLQSRIDLL 332

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
              A++   ++I+   + L  +    +   I ++   T  ++  LG ++ + S+ G +L 
Sbjct: 333 TKNAVIGLALVILCLALFLDIRLAFWSAVGIGVSFAATFIVMGALGMSINMISLFGFILA 392

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           IG+ VD+ I+V+E I +          +   G  R    +  S +T L+A   L      
Sbjct: 393 IGIVVDNAIVVSENIYKNGEDGVPPVQAAVKGTQRIAVPVIFSTLTTLVAFWPLLQMPAP 452

Query: 484 AVRGFA----ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
                     + M +  L  +   + + R +    +      ++    +       D   
Sbjct: 453 LGSFLGDIPTVVMIVLSLSMLQALLILPRNLTNLDMGQDYRPNLVFRFIGSIRGFIDRGL 512

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
             F+R     +    +  I          +   I       +       +    V + +E
Sbjct: 513 KWFIRNPLDAMLRFCVNRIFIPIACVIAMMMLTIALISYGYVRFSFFPEIQGEFVTAAVE 572

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                         E   +  ++           
Sbjct: 573 MTDGTTFDRTEAVAEDLRVAAIRAGDRLQDTLPD 606



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 84/229 (36%), Gaps = 8/229 (3%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              +G +   +                 + +  +  ++      N    G + ++   +  
Sbjct: 822  RQNGRRVTTITADVDESIITNSEANRIIREDLLPPLLAEHPGLNASFGGEQETQNDAQAA 881

Query: 670  I-VGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            +   + I+   +   + + F+ +   +  +  + L +   +    + GI   L +   ++
Sbjct: 882  LSQALGIAMFVIFALLALVFRSFVQPIVVMLAIPLGLIGAVTGHLILGIPLGLLSFFGII 941

Query: 728  TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             L G  +N+ +V+ D   + +   +   S +D + +   +       TS+  F+ V P+ 
Sbjct: 942  GLAGVVINNSLVMIDLYNEYL---SNGYSVKDAVVEGTKDRFRPIFLTSVTTFLGVYPLI 998

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +        +   A+ + +G+++     IF    + + ++   +  A++
Sbjct: 999  METSLQAQFLIPLAVSIGYGVLIGTFVIIFAIPAVFILVHQVSSFVAKL 1047



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/193 (10%), Positives = 65/193 (33%), Gaps = 10/193 (5%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            +A+  +    +  + + +  +  QN           L +      +I    +++ + + 
Sbjct: 295 DLAEDHLRTQFRPSLEQGIEATIWQNEATQLQSRIDLLTKNA----VIGLALVILCLALF 350

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                A  +   + +    T       G+  N+ ++   +  IG  V++ +VV + +   
Sbjct: 351 LDIRLAFWSAVGIGVSFAATFIVMGALGMSINMISLFGFILAIGIVVDNAIVVSENI--- 407

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFG 804
            K     +       K         +++++   ++  P+       GS +G     +   
Sbjct: 408 YKNGEDGVPPVQAAVKGTQRIAVPVIFSTLTTLVAFWPLLQMPAPLGSFLGDIPTVVMIV 467

Query: 805 IVVAASSSIFIAA 817
           + ++   ++ I  
Sbjct: 468 LSLSMLQALLILP 480


>gi|120435649|ref|YP_861335.1| AcrB/AcrD/AcrF family heavy metal cation efflux protein [Gramella
           forsetii KT0803]
 gi|117577799|emb|CAL66268.1| AcrB/AcrD/AcrF family heavy metal cation efflux protein containing
           OEP domains [Gramella forsetii KT0803]
          Length = 1466

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/686 (11%), Positives = 192/686 (27%), Gaps = 60/686 (8%)

Query: 3   NNPWLV-ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           NN  ++ IL   +   G        L +  +D  P       +            V+ V 
Sbjct: 11  NNKLVIGILTLFLIGWGTYS-----LTRLPIDAVPDITDNQVM------------VITVS 53

Query: 62  E---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  V   +    ++    + +        R   + +T+ F +         +V   
Sbjct: 54  PTLAAQEVEQLVTFPVEQTMVSIPEIKEMRSFSRFGLSIVTIVFEEDTDLYWARQQVQER 113

Query: 119 LQGVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
           L     ++     K     + T   +    V+      +    A E           Q+ 
Sbjct: 114 LSAAADEIPQGVGKPEMAPVTTGLGEIYQYVVHPEEGYEDEYDATELRTIQDWIIKRQLL 173

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            +    +  G    + Q     DP +L+ +  T  ++       N +  G          
Sbjct: 174 GTPGVAEVSGFGGFVKQYEIAIDPDKLQSMDITIEEIFTALEKNNQNTGGAYIDKGPNAF 233

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
              ++ LV +  E+                      +  +  G                 
Sbjct: 234 FIRSEGLVNNLQELE-------------------KIVIKESSGTPILVRDVAKVQFGHGV 274

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                       +   I       + +  I         ++                   
Sbjct: 275 RYGAATRNGEGEVVTGIVMMLKGANSSAVINNVKDKIEQIKETLPEGVTIEPYLDRKKLV 334

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             + S         A +V+ VL + +   + GLV    I L ++  ++++++ G +  L 
Sbjct: 335 DRAISTVTTNLTEGALIVIFVLVLFLGNLRGGLVVASVIPLAMLFAISMMNIFGVSGNLM 394

Query: 416 SIAG-----IVLGIGLAVDSNILVNERIREENRKNQSVFCS-LDMGFSRAYSTIFDSN-- 467
           S+       IV G  + V++ +    + + +      +  + +D     + S I  S   
Sbjct: 395 SLGAIDFGIIVDGAVIIVEAVMHGINKAKRKYPGVLKLSQAQMDAEVFDSASKIRTSAAF 454

Query: 468 -----ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KM 520
                +   +  + L    G      A T+  +IL +   +++ V  M   ++  K    
Sbjct: 455 GEIIILIVYLPILALTGVAGKMFHPMAQTVSFAILGAFILSLTYVPMMSALVLSKKTEHK 514

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID-FKGGI 579
           ++     +  F      I  + +  +   VGI++     ++   F  G  +     +G  
Sbjct: 515 RNFSDKMMDFFQRGYQPIIEKAIHTKLLVVGIAVGLFAMALIAFFRMGGEFIPQLDEGDF 574

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +         +  +    +  Q   +  Q  D     + ++      +         + 
Sbjct: 575 AVETRVPVGSSIDQMIDVSQKAQTI-LLSQYPDEVTQVVNKIGSGEIPTDPMPIEAGDMM 633

Query: 640 KKITEIVPLSTIQNTEIVGPKISREL 665
             ++     ++ ++ E +  ++   L
Sbjct: 634 VILSPKDEWTSAEDREGLIEEMQASL 659



 Score = 46.2 bits (107), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 61/142 (42%), Gaps = 11/142 (7%)

Query: 695  GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              +    + ++   G FAL   G+ F+++A    + L G +V + +V+   + +  +L  
Sbjct: 904  SLLIFTAIPLSAIGGVFALLLRGMPFSISAGVGFIALFGVAVLNGIVL---IAEFNRLDK 960

Query: 753  TS-ISFRDLIDKSINETLGRSVYTS-MAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                   + + +     L   + T+ +A+    LPMA+    G  V    A  +  G++ 
Sbjct: 961  EGVSDIYERVLQGTRVRLRPVLMTATVASL-GFLPMALSNTSGAEVQRPLATVVIGGLIT 1019

Query: 808  AASSSIFIAAPILLFIYDWRAK 829
            A + ++ +   + ++  + + K
Sbjct: 1020 ATALTLIVLPVLYIYFTEGKVK 1041



 Score = 39.3 bits (89), Expect = 3.0,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 57/172 (33%), Gaps = 18/172 (10%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + I + + +         L   + + L +   +    +FG+  NL ++ A+    G  V
Sbjct: 348 GALIVIFVLVLFLGNLRGGLVVASVIPLAMLFAISMMNIFGVSGNLMSLGAI--DFGIIV 405

Query: 735 NDKVVVYDRMRKNMKLYTTSIS--------------FRDLIDKSINETLGRSVYTSMAAF 780
           +  V++ + +   +                      F        +   G  +   +  +
Sbjct: 406 DGAVIIVEAVMHGINKAKRKYPGVLKLSQAQMDAEVFDSASKIRTSAAFGEIII--LIVY 463

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + +L +    G +    A  ++F I+ A   S+     +   +   + ++ R
Sbjct: 464 LPILALTGVAGKMFHPMAQTVSFAILGAFILSLTYVPMMSALVLSKKTEHKR 515


>gi|302546021|ref|ZP_07298363.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
           53653]
 gi|302463639|gb|EFL26732.1| putative integral membrane protein [Streptomyces himastatinicus
           ATCC 53653]
          Length = 731

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/517 (13%), Positives = 160/517 (30%), Gaps = 63/517 (12%)

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
           A  +L+V+F  ++     ++   +  +     LAL+S         +    ++G+ + VD
Sbjct: 185 ALGILLVVFGALVAALLPVLLGVTACIGTFGLLALVSHKLPLYDSTNSVMFLVGLAVGVD 244

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFA 489
             +    R R+E    +    +L +    +   +  S IT ++A   +F  G    +GFA
Sbjct: 245 YCLFYLRRERDERAAGRDPETALRIAAETSGRAVLVSGITVMLAMSGMFLSGLMLFQGFA 304

Query: 490 ITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           +   L +L++M  +++++ A + ++        + +    R         I     +   
Sbjct: 305 VATLLVVLMAMLGSVTVLPATLSWLGDRVDKGRVPLLNRRRDKGAHASGGISGTLMKPVL 364

Query: 550 VGISIL---------FSICSICLLFTHGLNYGIDFKGGIQLGVLANRP------------ 588
               +                  + T  L     F     L V                 
Sbjct: 365 ARPKLFAAVSAALLLVMCAPALGMKTENLGMEDQFGSDAPLTVAYKEITGAFPGGPAPAE 424

Query: 589 ---------------VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                                R   +S + G         E+          G+    T 
Sbjct: 425 VVVRADDISSSRFGAAVTDFKRQLADSGRFGKAVEVELHAEQGVARIEVPLAGNGENATS 484

Query: 634 VL-------EMVKKKITEIVPLSTIQNTEIVGPKISRELIRK-GIVGVIISAIAMLIYIW 685
                    ++V   +  +   + +          + +L      V V I+A+  L+ + 
Sbjct: 485 QRALDTLRDDLVPDVLGPVSDQAYVGGELAENRDFTDQLKTDIAPVFVFIAAVTFLLMLV 544

Query: 686 IRFKWYFALGAITTLILDITKTLGFFA----------LFGIEF-----NLTAVAAVLTLI 730
                  A+ +I   +L +    G             L G+E      +   +  ++ L 
Sbjct: 545 CFRSLPIAIVSILLNLLSVGAAYGTMTAVFQHGWGAELLGMEPAGAIESWMPLFVLVILF 604

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           G S++  V V  R+R+    +   ++ R+ I + I  T G     +         +A+  
Sbjct: 605 GLSMDYHVFVVSRIRE---AHDRGLTTREAIREGIRTTAGSVTGAATIMVAVFSVLALLR 661

Query: 791 GSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDW 826
              +    + +A  ++V      + +    +  + + 
Sbjct: 662 MQDMQQMGVGLAVAVLVDATLVRMLLLPSAMALLGER 698



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/271 (9%), Positives = 74/271 (27%), Gaps = 14/271 (5%)

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL-QIGDISFQNFDGEKNFLVRL 621
           ++     +          L     +  + + ++  + S      +      G+ +     
Sbjct: 75  MVMLRSTDPDGWRAAARDLSARLEKTGETARIQPPVRSASGREGLVAFQLKGDPDTAGER 134

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                D+VA T                +  +   ++     +       + + I  +   
Sbjct: 135 VKPVLDAVAATESAHRGITAHEFGDATAQHELDGMLKNDFKKAEFTAVPLALGILLVVFG 194

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEF---NLTAVAAVLTLIGYSVNDKV 738
             +         + A          T G  AL   +    + T     L  +   V+  +
Sbjct: 195 ALVAALLPVLLGVTACIG-------TFGLLALVSHKLPLYDSTNSVMFLVGLAVGVDYCL 247

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
               R R               +  +   +    + + +   +++  M + G  +   FA
Sbjct: 248 FYLRRERDERAA---GRDPETALRIAAETSGRAVLVSGITVMLAMSGMFLSGLMLFQGFA 304

Query: 799 IPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +     +++A   S+ +    L ++ D   K
Sbjct: 305 VATLLVVLMAMLGSVTVLPATLSWLGDRVDK 335


>gi|229094547|ref|ZP_04225614.1| Swarming motility protein swrC [Bacillus cereus Rock3-42]
 gi|228688794|gb|EEL42625.1| Swarming motility protein swrC [Bacillus cereus Rock3-42]
          Length = 699

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/681 (10%), Positives = 195/681 (28%), Gaps = 33/681 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKDALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       ++     K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASSQGSQTAGAGAQMPQMNPAAMNGIPTVTLSEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAILLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKG 669
              +  +    KI R  + K 
Sbjct: 648 KNFEKRKNKSLKIYRRCLEKA 668



 Score = 88.2 bits (216), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 SEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524


>gi|315127848|ref|YP_004069851.1| cation efflux system protein [Pseudoalteromonas sp. SM9913]
 gi|315016362|gb|ADT69700.1| cation efflux system protein [Pseudoalteromonas sp. SM9913]
          Length = 1038

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/522 (12%), Positives = 143/522 (27%), Gaps = 39/522 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + V+L + I   G L A+ N    + +D  P       I                   
Sbjct: 12  NRFFVLLLTTILIGGGLYAVKN----TPVDALPDLSDVQVI---------VKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F +         +V  +L  V+
Sbjct: 59  QVVQDQVTFPITTAMLSVPGAQTVRGFSFFGDSYVYVIFDEDTDLYWARSRVQEYLSQVS 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           ++L       L    T      +              +           ++       + 
Sbjct: 119 ARLPSTAIAELGPDATGVGWVYLY-ALTDTTGKHDISQLRSLQDWFLKFELQTVPGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q      P +LR      + +       N      +  +        +   V
Sbjct: 178 ASVGGMVKQYQVNVQPDKLRAYGIPLSLIQTAIKQGNQEMGASVVEMAEAEYMVTSTGYV 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +   ++  I L                       G         +    P        + 
Sbjct: 238 KSVADLEAIPLGINA------------------NGTALQLRDVANVRLGPQMRRGVAELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   +   +   +   TIE        L+ G       +           +     
Sbjct: 280 GEGEVAGGVVVMRFGENAQKTIELVKAKLESLKKGLPEGVEIVPVYDRSHLIKDAVDNLT 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   +V +V  + + + +  LVA  ++ L ++    ++   G    + S+ GI + 
Sbjct: 340 SKLMEELIVVALVCVVFLFHVRSSLVAIITLPLGILTAFIIMHWQGINANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG   D  I++ E + +   K    +++ +  +    S     +F S +   ++ + +F 
Sbjct: 400 IGAMTDGAIVMIENMHKHMEKKPLTDENRWQVVIDSASEVGPALFFSLLIITVSFMPVFI 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
                G      A T   ++  S   AI++V  +M + IR K
Sbjct: 460 LEAQEGRMFAPLAYTKTYAMAASAGLAITLVPVLMGYFIRGK 501



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 86/224 (38%), Gaps = 7/224 (3%)

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G    +   +            LE +KK + E V +  + +   +       L  K 
Sbjct: 283 EVAGGVVVMRFGENAQKTIELVKAKLESLKKGLPEGVEIVPVYDRSHLIKDAVDNLTSKL 342

Query: 670 IV-GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           +   ++++ + ++      F    +L AI TL L I          GI  N+ ++  +  
Sbjct: 343 MEELIVVALVCVV----FLFHVRSSLVAIITLPLGILTAFIIMHWQGINANIMSLGGIAI 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMA 787
            IG   +  +V+ + M K+M+    +   R  ++  S +E      ++ +   +S +P+ 
Sbjct: 399 AIGAMTDGAIVMIENMHKHMEKKPLTDENRWQVVIDSASEVGPALFFSLLIITVSFMPVF 458

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +        FA P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 459 ILEAQEGRMFA-PLAYTKTYAMAASAGLAITLVPVLMGYFIRGK 501



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 85/266 (31%), Gaps = 26/266 (9%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   A + + L+ V     S     I  +N        + ++     S  ++    + +
Sbjct: 780  PIVTPAGQRIALADVADVYISDGPPGIKSENARLNGWSFIDIKDTDIGSYVESAQQLLNE 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR-FKWYFALGAIT 698
            + I       T         +   +L    ++ + ++ I +L+Y+  R F   F + A  
Sbjct: 840  QLILPAGYSITWAGQYEYMERAKAKL--SYVLPLTLAIIVVLLYLNFRSFTEVFIIMATL 897

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR-------KNMKLY 751
             L +     +    L G  F++      + L G +V   V++   +        +     
Sbjct: 898  PLAM--IGGIWLMYLEGFNFSVAVGVGFIALAGVAVEIGVIMLVYLNQAYKAQVEAAAQL 955

Query: 752  TTSISFRD---LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
              SIS       I +     +   + T     I +LP+      G  V+   A PM  G 
Sbjct: 956  GKSISIEQLKHAILEGAGLRVRPVMMTVATIVIGLLPVLYGTGTGSEVMSRIAAPMVGG- 1014

Query: 806  VVAASSSIF----IAAPILLFIYDWR 827
                 S+I     +   + L      
Sbjct: 1015 ---MFSAIVLTLLVLPAVYLLWRKRN 1037


>gi|262378146|ref|ZP_06071303.1| RND divalent metal cation efflux transporter [Acinetobacter
           radioresistens SH164]
 gi|262299431|gb|EEY87343.1| RND divalent metal cation efflux transporter [Acinetobacter
           radioresistens SH164]
          Length = 1054

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/599 (9%), Positives = 157/599 (26%), Gaps = 59/599 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W+++   +   +G+         +  +D  P                   +  + +   
Sbjct: 35  IWVMLFACIWIAVGIYS-----YQKLPIDAVPDITNTQ-----------VQINTQANGFT 78

Query: 65  F--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +    +     R   +++T+ F D         ++   +Q +
Sbjct: 79  ALEVEQRITYPIENAMAGIPDLELTRSISRYGLSQVTIVFEDGTDIYWARQQINQRIQEI 138

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLS------QNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            ++L       +   +T                   D     A++           Q+  
Sbjct: 139 QAELPAQTSPIMSPVSTGLGEIYQWVLRAGPKAKKSDGTAYTAMDLREIQDWVVRPQLQR 198

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +               D + ++QL  +  ++       N ++          + +
Sbjct: 199 VQGVAEVNSIGGFEKNYVVSPDFNYMQQLNISLEQLQQALNQNNENRGAGYIEDNGQQLT 258

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 + +  +I    +                         R         +     +
Sbjct: 259 VRIPGTLNNISDIENTLVT--------------------SSSGRAIRVSDIAQVSIGHDL 298

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G           I       +     +        ++                    
Sbjct: 299 RTGGATYNGEETVLGIAMMAMGENSRTVSKAVDAKIRNIQNSLPKGVFIETVYDRTSLVE 358

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +    +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  L S
Sbjct: 359 KAIKTVQKNLVEGAVLVIVILFLFLGNIRAALITACVIPLSMLFTLTGMAQKNISANLMS 418

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDS 466
           +  +  GI   VD  +++ E         Q            F  + +   +A   +   
Sbjct: 419 LGALDFGII--VDGAVVIVENCIRRLAHAQHLLKRPLTQSERFKEVFLAARQARRPLIFG 476

Query: 467 NITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +  L+  + +F   G         A+T+ L+++ +M  +I+ V A +   ++    ++ 
Sbjct: 477 QLIILVVYLPIFALSGIEAKMFHPMALTVVLALIAAMILSITFVPAAVALWVKGDIRETE 536

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                S        + + +            L  +  +              +G   + 
Sbjct: 537 SGWMTSLKKSYEKTLNVAYEYKAVVLTFAICLLVVTGVLTTKLGSEFAPQLGEGDFAVQ 595



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 81/222 (36%), Gaps = 9/222 (4%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            S++ S++  +   +   Q         + +          + + ++  +  T  +P    
Sbjct: 819  SIILSDVAKVASIEGINQVSRENGKRRMVITANVEGRDLGSFISDLQTQLKTYDLPSGYW 878

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
                     ++     +  + + ++ I + I +   F     +L   T +   +T  + F
Sbjct: 879  IEYGGQFENLASA-KTRMQIVIPLALITIFILLMAVFHNMKDSLLVFTGVPFALTGGVLF 937

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L  I  +++A    + L G +V + +V+   +++    Y    +  + + +     L 
Sbjct: 938  LWLRDIPLSMSAGIGFIALSGVAVLNGLVMLTFIKELRLKY----NLHEAVWQGAILRLR 993

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              + T+  A +  +PMA+    G  V    A  +  GI+ + 
Sbjct: 994  PVLMTACVASLGFVPMALATGTGAEVQRPLATVVIGGIISST 1035



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 79/263 (30%), Gaps = 13/263 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              +   + R + +S +        +          E    + +     +S   ++ ++ 
Sbjct: 273 NTLVTSSSGRAIRVSDIAQVSIGHDLRTGGATYNGEETVLGIAMMAMGENSRTVSKAVDA 332

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGA 696
             + I   +P      T      +  + I+     ++  + + ++I          AL  
Sbjct: 333 KIRNIQNSLPKGVFIETVYDRTSLVEKAIKTVQKNLVEGAVLVIVILFLFLGNIRAALIT 392

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTTS 754
              + L +  TL   A   I  NL ++ A+    G  V+  VV+ +    R     +   
Sbjct: 393 ACVIPLSMLFTLTGMAQKNISANLMSLGAL--DFGIIVDGAVVIVENCIRRLAHAQHLLK 450

Query: 755 ISFRDL-----IDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV 806
                      +  +  +     ++  +   +  LP+    G    +    A+ +   ++
Sbjct: 451 RPLTQSERFKEVFLAARQARRPLIFGQLIILVVYLPIFALSGIEAKMFHPMALTVVLALI 510

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
            A   SI      +        +
Sbjct: 511 AAMILSITFVPAAVALWVKGDIR 533


>gi|148828076|ref|YP_001292829.1| acriflavine resistance protein [Haemophilus influenzae PittGG]
 gi|148719318|gb|ABR00446.1| acriflavine resistance protein [Haemophilus influenzae PittGG]
          Length = 1025

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 9   RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 50

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 51  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 111 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 168 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 228 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKEND 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 268 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 328 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 388 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 448 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 496



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 78/194 (40%), Gaps = 16/194 (8%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKG-IVGVIISA--IAMLIYIWIRFK-WYFALG 695
              + +    +  Q         +R+L+++G  + V  +   I + + + I+F+     + 
Sbjct: 815  AWLQQHATDNLPQGYTFDFKSEARQLVQEGNALAVTFALAVIIIFLVLAIQFESIRDPMV 874

Query: 696  AITTLILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             + ++ L +         L FF++ G   N+ +   ++TL+G      +++ +  ++   
Sbjct: 875  IMISVPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEEQL 934

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIV 806
               T I   + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ 
Sbjct: 935  NGKTRI---EAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLS 991

Query: 807  VAASSSIFIAAPIL 820
            +    ++F+   + 
Sbjct: 992  IGTIFTLFVLPVVY 1005



 Score = 47.0 bits (109), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 301 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 474

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 475 VALTLSPMMSSKLLKSNAKP 494


>gi|315645795|ref|ZP_07898916.1| protein-export membrane protein SecD [Paenibacillus vortex V453]
 gi|315278556|gb|EFU41870.1| protein-export membrane protein SecD [Paenibacillus vortex V453]
          Length = 416

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 90/213 (42%), Gaps = 6/213 (2%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G+              +  +      + ++ VG  +  + + K +   +I++ A+
Sbjct: 196 TAQITGNYSLDEAKQIRDTINLGALPLKLVEKYSQSVGATLGMQSLTKTLQAGLIASAAI 255

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           L+++ IR++    L A   LIL     +  F        L  +AA +  IG +V+  ++ 
Sbjct: 256 LLFMIIRYRVP-GLLASFALILHTWLLILIFVWADFTLTLPGIAAFILGIGMAVDANIIT 314

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           Y+R+R+ +K   T  S    +      +L   + +++   +    M  +G   +  FA+ 
Sbjct: 315 YERIREEIK---TGKSVPSAVKSGGKSSLRAIMDSNLTTILVAAVMFGFGTGAVKGFALV 371

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD--WRAKNA 831
           +   I+V+ +++++ +  +L  + +  W  K +
Sbjct: 372 LILEIIVSIATNVYFSRFLLNLLVNIGWARKPS 404



 Score =  114 bits (284), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 109/384 (28%), Positives = 195/384 (50%), Gaps = 19/384 (4%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
              QV   A++++ + +++R D +G SE  +   G++RI +++ G  D + +R+ +   A
Sbjct: 50  EGQQVTKEALQETAKSLQKRADAMGTSEPEVTPEGTNRIRLKVAGVTDEAEVRKTMKEPA 109

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            ++F         + F                   K+E+ G       A+    T    +
Sbjct: 110 NLTFRSNDGCKEGEEF------------------CKIELRGDDFVENGASVAYDTLNQPM 151

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
                +    +F E+T   +G+ LA+ +D ++L+AP +   +  G AQI+GN++++ A  
Sbjct: 152 IDIKVKDKG-KFAEITERLLGQELAIFMDDQLLSAPTVRAVLTDGTAQITGNYSLDEAKQ 210

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           +   +  G+LP+KL     ++VGA LG  S+ K   A +     I+LFMI+ Y   GL+A
Sbjct: 211 IRDTINLGALPLKLVEKYSQSVGATLGMQSLTKTLQAGLIASAAILLFMIIRYRVPGLLA 270

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
            F++ L+  L + +      TLTLP IA  +LGIG+AVD+NI+  ERIREE +  +SV  
Sbjct: 271 SFALILHTWLLILIFVWADFTLTLPGIAAFILGIGMAVDANIITYERIREEIKTGKSVPS 330

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           ++  G   +   I DSN+T ++   V+F FG GAV+GFA+ + L I++S+ T +   R +
Sbjct: 331 AVKSGGKSSLRAIMDSNLTTILVAAVMFGFGTGAVKGFALVLILEIIVSIATNVYFSRFL 390

Query: 511 MIFIIRYKKMKSIDINPLSRFFLI 534
           +  ++     +      +    + 
Sbjct: 391 LNLLVNIGWARKPSHYGVKERDIR 414



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 28/89 (31%), Gaps = 5/89 (5%)

Query: 42  NRISLGLDLRGGSHLVLEVDE----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-N 96
             + LGLDL+GG  ++ E +            LQ  +  L+      G     +     N
Sbjct: 27  KEVRLGLDLKGGFEILYEAEPLMEGQQVTKEALQETAKSLQKRADAMGTSEPEVTPEGTN 86

Query: 97  KITLSFADSRFKENIADKVTLFLQGVNSK 125
           +I L  A    +  +   +          
Sbjct: 87  RIRLKVAGVTDEAEVRKTMKEPANLTFRS 115


>gi|254481361|ref|ZP_05094606.1| RND transporter, HAE1/HME family, permease protein [marine gamma
           proteobacterium HTCC2148]
 gi|214038524|gb|EEB79186.1| RND transporter, HAE1/HME family, permease protein [marine gamma
           proteobacterium HTCC2148]
          Length = 1020

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/634 (11%), Positives = 186/634 (29%), Gaps = 32/634 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
            +          V GF+      + +  +            ++ IT+         N+ +
Sbjct: 47  VNTYYPGASARTVQGFVTTPLQVVIAGARGIEYMNSESNPGESNITIYVRLGEDSNNVLN 106

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           +V   +      L  D ++ ++   T     ++      +       + +  ++R    +
Sbjct: 107 EVIAKVSEARGNLPRDIEEPIVS-ATGGGDGLIWLGFYSE--QMTLYQVTDFLLRSVQPE 163

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +       +        + +    DP R+  L  T   ++      N            +
Sbjct: 164 LATLPGVGKANVF-SYKLAMRIRLDPVRMAALGVTATDVNAAIQRDNFISAAGATEGNLV 222

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           R +   +  ++ + E  G                    +   + G  R       +I   
Sbjct: 223 RVTVDARTTLQTEEEFRG--------------------LVVRQSGDERILLGDVADIELD 262

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                   + +         +     +              + A        +++     
Sbjct: 263 SETDQVKTLSSGKAAVFLSITPTPDANPLEVSRAVHATLPKIEAALPADMDMLIDWDGSV 322

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + S    T    + +V++V+++ +   +  L+   +I L++I  + L+  +G +L 
Sbjct: 323 VIDEAISQVLTTLIEASVIVILVIYLFLGSLRVVLIPLIAIPLSLIGVVFLIMTMGFSLN 382

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  +V+ IGL VD  I+V E +     +  S + +   G       +    +T    
Sbjct: 383 LLTLLALVIAIGLVVDDAIVVVENVHRHIEEGASPYAAAIAGAREVAWPVVAMTLTLAAV 442

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
              + F G   G     FA+ +  ++++S   A+++   M   +++    +    N L  
Sbjct: 443 YAPISFIGGLTGALFSEFALALAGAVIVSGVVALTLTPMMCSRVLKDSAHQGRFANWLDH 502

Query: 531 FFLIPDCIAIQF-----MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
            F         F            +   +L +                +  G + +   A
Sbjct: 503 RFETLIQHYRHFLATCLDNRGAVLLLAGVLLASLPALFFLAQEELAPEEDTGAVYITGSA 562

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            R  +L+     L  +         F      +       G ++      E  +K++   
Sbjct: 563 PRYANLAYQDFYLSQIVDIWQEIPEFSHSWQVIRPGSNFGGVTLHPWDERERDQKELLAE 622

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIA 679
           +     Q T +         +     G+ +S + 
Sbjct: 623 LQGKLSQITGMELFAFGEPSLPGSDAGLPVSFVV 656



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 80/236 (33%), Gaps = 7/236 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
           +  + L  V       +   +   +      FL        + +  +R +     KI   
Sbjct: 248 DERILLGDVADIELDSETDQVKTLSSGKAAVFLSITPTPDANPLEVSRAVHATLPKIEAA 307

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDI 704
           +P       +  G  +  E I + +  +I  S I +L+           L  +  + L +
Sbjct: 308 LPADMDMLIDWDGSVVIDEAISQVLTTLIEASVIVILVIYLFLGSLRVVLIPLIAIPLSL 367

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
              +      G   NL  + A++  IG  V+D +VV + +    +      S        
Sbjct: 368 IGVVFLIMTMGFSLNLLTLLALVIAIGLVVDDAIVVVENVH---RHIEEGASPYAAAIAG 424

Query: 765 INETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
             E     V  ++       P++  G   G++   FA+ +A  ++V+   ++ +  
Sbjct: 425 AREVAWPVVAMTLTLAAVYAPISFIGGLTGALFSEFALALAGAVIVSGVVALTLTP 480



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 61/148 (41%), Gaps = 6/148 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +   L  + T+ L I   +   AL  +  N+ +   +LTLIG      +++ +    + 
Sbjct: 864  SFRDPLVVLVTVPLSIFGAVVPIALGFVTLNIYSQVGLLTLIGLISKHGILIVEF---SN 920

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVIGSFAIPMAF--GI 805
            KL    +  R+ + +  ++ L   + T+ A  + + P+ +  G      F+I +    G+
Sbjct: 921  KLAGQGMDKREAVLEGASKRLRPILMTTFATVLGIWPLVIASGAGAQSHFSIGVMITCGM 980

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
            +V    ++F+     L       + + +
Sbjct: 981  LVGTLFTLFVVPVFYLPFSKAGKRTSSL 1008


>gi|68249482|ref|YP_248594.1| cation/multidrug efflux pump [Haemophilus influenzae 86-028NP]
 gi|68057681|gb|AAX87934.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           86-028NP]
          Length = 1032

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 15  RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 56

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 57  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 116

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 117 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 174 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 234 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKEND 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 274 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 334 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 394 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 453

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 454 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 502



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 86/250 (34%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 770  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGISSGDAIAWLQQQAND 829

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 830  NLPQ-GYTYDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 884

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF++ G   N+ +   ++TL+G      +++ +  ++    Y  
Sbjct: 885  VPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLNYGK 944

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVVAAS 810
            +    + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ +   
Sbjct: 945  TR--IEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLSIGTI 1002

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 1003 FTLFVLPVVY 1012



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 307 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 364 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 420

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 421 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 480

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 481 VALTLSPMMSSKLLKSNAKP 500


>gi|24376361|ref|NP_720469.1| CzcA family heavy metal efflux protein [Shewanella oneidensis MR-1]
 gi|24345272|gb|AAN53069.1| heavy metal efflux two-channel pump, HME family [Shewanella
           oneidensis MR-1]
          Length = 1045

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/593 (12%), Positives = 168/593 (28%), Gaps = 45/593 (7%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
           ++I+  MI   G+       L ++ LD  P       I                     V
Sbjct: 16  VLIIAIMITVWGV-----QELRKTPLDALPDLSDVQVI---------IKTPYPGQAPKLV 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +          +              + + + F +         +V  +L  ++S+L
Sbjct: 62  EEQVTYPLSTAMLAVPGAKTVRGYSMFGDSYVYVIFEEGTDIYWARSRVLEYLSQISSRL 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             + + +L    +                     +           ++       +    
Sbjct: 122 PQNVQPSLGPDASGVGWVFEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVSEVATV 180

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +        +P ++       A +       N+   G +  +         +   +  
Sbjct: 181 GGMEQTYQIVLEPDKMAIYKLDIASIKDAIEKSNSETGGSVIEMAEAEYMVRAKGYRQTL 240

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            +   I L   + +    T K V  +       R   E+  +                  
Sbjct: 241 EDFREIPLGITSPSGTGLTLKDVATVRKGPASRRGIAELDGE-----------------G 283

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   I   +   +   TI+        L+AG       I         L S        
Sbjct: 284 EVVGGIVVMRYGENALATIDAVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNLFSKV 343

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI + IG 
Sbjct: 344 VEEMLVVGLVCLLFLLHARSTLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIGA 403

Query: 427 AVDSNILVNERIREENRKN----------QSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            VD  I++ E + +               +  +  +          +F S I   ++ V 
Sbjct: 404 VVDGAIVMIENLHKHLEHFKADHNREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFVP 463

Query: 477 LF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   ++  + F +I++V  +M + IR K               
Sbjct: 464 VFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSERSNPISRFLIA 523

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           I        ++     + ++++    +   +   G  +    + G  L +   
Sbjct: 524 IYQPSLKLVLKFPKVTLMLALIALASAWYPMTRMGSEFMPTLEEGDLLYMPTA 576



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +  K    L  K +  
Sbjct: 287 GGIVVMRYGENALATIDAVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNMKL----YTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K+++     +      ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEHFKADHNREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+          F   A    F +  AA  SI +   ++ +    +  + R
Sbjct: 463 PVFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSER 513



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 71/220 (32%), Gaps = 13/220 (5%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +    +        E   L+   +   +  +    +   K  +   + +    +    G 
Sbjct: 802  ADIEINDGAPMLKSENGRLISWVFIDIEGTSIGEYIATAKTALDAELVVPPRYSYSFAGQ 861

Query: 660  KISRELIR---KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                + +    K ++ + ++ I +L+ +        ++  + +L   +  +     L   
Sbjct: 862  YEYMQRVDAKLKQVIPMALAVIFILLMMTFGSTIQASII-MLSLPFALVGSTWLLYLLDY 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLG 770
              ++     ++ L G +    VV+        + R+    Y +    ++ + +     + 
Sbjct: 921  NISVAVAVGMIALAGVAAEFGVVMLVYLNNAIKHRQEKDNYHSVSDLKEALMEGAVMRIR 980

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                T    F  +LP+      G  V+   A PM  G+V 
Sbjct: 981  PKAMTVATIFFGLLPIMWGAGSGNDVMQKIAAPMVGGMVT 1020


>gi|309778698|ref|ZP_07673472.1| cobalt-zinc-cadmium resistance protein CzcA [Ralstonia sp.
           5_7_47FAA]
 gi|308922548|gb|EFP68171.1| cobalt-zinc-cadmium resistance protein CzcA [Ralstonia sp.
           5_7_47FAA]
          Length = 1058

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 60/603 (9%), Positives = 144/603 (23%), Gaps = 66/603 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WL+IL  +    G+         +  +D  P                 +++ ++++   
Sbjct: 13  RWLIILAVL----GMAALGVYNYGKLPIDAVPDI---------------TNVQVQINTAA 53

Query: 65  F------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                      +    + + + L          R   +++T+ F D          V   
Sbjct: 54  PGYSPLETEQRITYPIETVMAGLPGLEQTRSLSRYGLSQVTVIFKDGTDIYFARQLVNQR 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRID 172
           +Q    +L       +   +T      + +    D             +           
Sbjct: 114 IQEAKERLPGGVTPAMGPISTGLGEIYLWTVEAEDGARKPDGAAYTPTDLREIQDWVVKP 173

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           Q+       +         +        RL     T   +       N++        R 
Sbjct: 174 QLRNVTGVTEINSIGGYAKEYLVAPSLERLASYGLTLTDLVSALDKNNSNVGAGYIERRG 233

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
            +        V+   +I                     D+       +        ++  
Sbjct: 234 EQYLVRAPGQVKSLDDI--------------------RDVIVGTAQGQPIRIRDVADVDI 273

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
              +           +           +     +      A +          +      
Sbjct: 274 GRELRTGAATENGKEVVLGTVFMLIGENSRAVSQAVDKKMAEINRTLPAGVKAVTVYDRT 333

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                + +  K      A LV+ +LF+ +   +  ++    I L ++ T   +     + 
Sbjct: 334 VLVDKAIATVKKNLLEGATLVIAILFLFLGNIRAAVITAMVIPLAMLFTFTGMVSYKISA 393

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC----------SLDMGFSRAYST 462
            L S+  +  GI   +D  +++ E         Q               +      A   
Sbjct: 394 NLMSLGALDFGII--IDGAVVIVENCVRRLAHAQEHHKRELTRSERFHEVFAAAREARRP 451

Query: 463 IFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +    +  +I  + +F      G      A T+ L++L +M  +++ V A +   I  K 
Sbjct: 452 LLFGQLIIMIVYLPIFALTGVEGKMFHPMAFTVVLALLAAMVLSMTFVPAAVALFIGRKV 511

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            +  +             +               I    C                +G I
Sbjct: 512 AEKENRLMEWAKHRYQPMLEASLANTPVVLTFACIAIVFCLAVASRLGSEFVPNLNEGDI 571

Query: 580 QLG 582
            + 
Sbjct: 572 AIQ 574



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 8/130 (6%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+  GI  +++A    + L G +V + +V+   +R    L     S    I
Sbjct: 917  FALTGGILALWLRGIPLSISAAVGFIALSGVAVLNGLVMLSFIR---SLREEGQSLDTAI 973

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   L   + T++ A +  +PMA+    G  V    A  +  GI+ + + ++ +   
Sbjct: 974  RTGALTRLRPVLMTALVASLGFVPMAIATGTGAEVQRPLATVVIGGILSSTALTLLVLPV 1033

Query: 819  ILLFIYDWRA 828
            +    +    
Sbjct: 1034 LYRLAHRKDE 1043



 Score = 45.1 bits (104), Expect = 0.056,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + I          A+     + L +  T      + I  NL ++ A+    G 
Sbjct: 348 LEGATLVIAILFLFLGNIRAAVITAMVIPLAMLFTFTGMVSYKISANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDR-MR------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++  VV+ +  +R      ++ K   T       +  +  E     ++  +   I  LP
Sbjct: 406 IIDGAVVIVENCVRRLAHAQEHHKRELTRSERFHEVFAAAREARRPLLFGQLIIMIVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    A  +   ++ A   S+ F+ A + LFI      K  R+
Sbjct: 466 IFALTGVEGKMFHPMAFTVVLALLAAMVLSMTFVPAAVALFIGRKVAEKENRL 518


>gi|296446878|ref|ZP_06888815.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
 gi|296255649|gb|EFH02739.1| acriflavin resistance protein [Methylosinus trichosporium OB3b]
          Length = 1072

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/539 (11%), Positives = 150/539 (27%), Gaps = 44/539 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+   +I  +G L        ++ +D FP+                  ++   
Sbjct: 9   LRRPYTFVVAAILIVILGGLAIF-----RTPVDIFPAVGIPV-----------VSVIWTY 52

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
             +  DD     L  Y   L + +                  + F      +    +V  
Sbjct: 53  VGLSPDDMSTRILYPYELALTALVNDIDHVESQSYNGIGVNKIYFQPKVKIDLALAQVGA 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q V   L    +   +++     + ++    +        +  ++  +      +   
Sbjct: 113 AGQTVLRLLPPGVQPPQVISFNASTVPVIQIAFSSATRTEAEVADAVYTL--IRPPLTTV 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                         Q+  + D  +L  L  T   +                        +
Sbjct: 171 TGAAVPFPYGGKSRQVRIDLDQEKLLGLGLTAQDVVTAV--------------------E 210

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               ++    +  G +      N  P     + D           +     ++    A  
Sbjct: 211 RQNLIIPAGTQKIGDYEYAVLINDAPADISALNDFPIKRADGAIVYLRDVAHVHNGNAPQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S    I     +   L+          V         G
Sbjct: 271 TNLVRVDGAPAVLLPVLTSGSASSLDVINGVKAMLPRLKLALPDGIEMTVIGDQSAFISG 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +        AI A L  +++ + +   +  ++   SI L+++  L  LS LG T+ + ++
Sbjct: 331 AVVSVAREAAIAAALTGLMILLFLGSWRSTIIITISIPLSILAALFALSALGETVNVMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +GL VD   +  E +       +++  ++        +    S +   I    L
Sbjct: 391 GGLALAVGLLVDDATVTIENVNRHMEAGEAIDDAIIKAAKEIITPATVSLLCICIVFAPL 450

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
              G   G   R  A  +  +++ S F   ++V  M  + +  ++ +++          
Sbjct: 451 LLLGGVAGYLFRPLAEAVVFAMIASYFLTYTLVETMARYFLSAQQHEALREAKYGPARR 509



 Score = 47.4 bits (110), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 4/146 (2%)

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           L+ +     W   +    ++ L I   L   +  G   N+  +  +   +G  V+D  V 
Sbjct: 348 LMILLFLGSWRSTIIITISIPLSILAALFALSALGETVNVMTLGGLALAVGLLVDDATVT 407

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
            + +    +      +  D I K+  E +  +  + +   I   P+ + GG     F  P
Sbjct: 408 IENVN---RHMEAGEAIDDAIIKAAKEIITPATVSLLCICIVFAPLLLLGGVAGYLFR-P 463

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDW 826
           +A  +V A  +S F+   ++  +  +
Sbjct: 464 LAEAVVFAMIASYFLTYTLVETMARY 489


>gi|301169614|emb|CBW29215.1| multidrug efflux system protein [Haemophilus influenzae 10810]
          Length = 1032

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 15  RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 56

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 57  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 116

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 117 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 174 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 234 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKESD 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 274 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 334 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 394 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 453

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 454 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNTKPTW 502



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 86/250 (34%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 770  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGISSGDAIAWLQQQAND 829

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 830  NLPQ-GYTYDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 884

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF++ G   N+ +   ++TL+G      +++ +  ++    Y  
Sbjct: 885  VPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLNYGK 944

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVVAAS 810
            +    + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ +   
Sbjct: 945  TR--IEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLSIGTI 1002

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 1003 FTLFVLPVVY 1012



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 32/200 (16%), Positives = 77/200 (38%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 307 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 364 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 420

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 421 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 480

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +     K 
Sbjct: 481 VALTLSPMMSSKLLKSNTKP 500


>gi|167588386|ref|ZP_02380774.1| acriflavin resistance protein [Burkholderia ubonensis Bu]
          Length = 1032

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/454 (11%), Positives = 119/454 (26%), Gaps = 25/454 (5%)

Query: 56  LVLEVDEDDFVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENI 111
           + +E          +         +  +          +  Q ++ +      +   +  
Sbjct: 56  ISVETAYPGASQALMQGFVTTPIAQSIATADGIEYLNSTSTQGKSVVKARLRLNANADRA 115

Query: 112 ADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRI 171
             ++   +Q V  KL      +++   T+   +++    + D +     E +  ++R   
Sbjct: 116 MTEIMAKVQEVKYKLPEGAYDSVITKLTDAPTAVMYLGFSSDTL--SIPEITDYVVRVAQ 173

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
             +                + +    D SRL     + A ++      N           
Sbjct: 174 PLVTTVPGVASAEIVGGQNLAMRVWLDASRLAAHGLSAADVAGALKANNVQAAPGQVKGA 233

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                      + D                          +   +             I 
Sbjct: 234 LTVADISANTDLTDVGA-------------------FGNLVVKSDANGSFVRLRDVATIE 274

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                     ++          +     +    +     L   +                
Sbjct: 275 LGGQQYNASALMNGRRAVNIAINATPSGNPLDIVRGVQALLPTMERNKPASIRIGDVFDV 334

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S    + T      +V+IV+F+ +   +  ++   +I L ++ + AL+   G +
Sbjct: 335 ARFVNASIDEVRETIVEAIAIVVIVIFLFLGSFRAVVIPVVTIPLALVGSAALMLAAGFS 394

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           L L ++  +VL IGL VD  I+V E I       +    +  +G     S +    IT +
Sbjct: 395 LNLLTLLAMVLAIGLVVDDAIVVVENIHRHIESGEPPARAALLGAREIASPVIVMTITLV 454

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAIS 505
                +   GG     F             +A+ 
Sbjct: 455 AVYAPIGLMGGLTGSLFREFAFTLAGAVCVSAVI 488



 Score = 73.6 bits (178), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/149 (16%), Positives = 55/149 (36%), Gaps = 9/149 (6%)

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
            E+    +  + I  I + +++     +   +  + T+ L +  +       G   NL  
Sbjct: 343 DEVRETIVEAIAIVVIVIFLFLG---SFRAVVIPVVTIPLALVGSAALMLAAGFSLNLLT 399

Query: 723 VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
           + A++  IG  V+D +VV + +    +   +             E     +  ++     
Sbjct: 400 LLAMVLAIGLVVDDAIVVVENIH---RHIESGEPPARAALLGAREIASPVIVMTITLVAV 456

Query: 783 VLPMAVWG---GSVIGSFAIPMAFGIVVA 808
             P+ + G   GS+   FA  +A  + V+
Sbjct: 457 YAPIGLMGGLTGSLFREFAFTLAGAVCVS 485



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/200 (13%), Positives = 71/200 (35%), Gaps = 10/200 (5%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WY 691
            + +E ++K+                  +    L        + + + + + +  +F+   
Sbjct: 825  QAVEFLQKQALPPGYDIDWLGESRQYVQEGNRLTVT----FVFALVVIFLVLAAQFESLR 880

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  + ++ L +   L    L     N+     ++TLIG      +++     +  +  
Sbjct: 881  DPLVILVSVPLSVCGALVPLYLGFATLNIYTQIGLVTLIGLISKHGILMVSFANELQR-- 938

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
            T ++  R  I+ +    L   + T+ A    ++P+      G +   +  I ++ G++V 
Sbjct: 939  TQNLDRRAAIEHAAAVRLRPILMTTAAMVAGLVPLIFARGAGAASRFAIGITVSTGMLVG 998

Query: 809  ASSSIFIAAPILLFIYDWRA 828
               ++F+   +   I     
Sbjct: 999  TLFTLFVLPTVYTLIAKRHR 1018


>gi|121613194|ref|YP_001000712.1| AcrB/AcrD/AcrF family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005633|ref|ZP_02271391.1| AcrB/AcrD/AcrF family protein [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249230|gb|EAQ72191.1| AcrB/AcrD/AcrF family protein [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 1005

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/542 (11%), Positives = 152/542 (28%), Gaps = 50/542 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++ +  +   GL+ A    +        P     ++I+      G  + V     
Sbjct: 8   RPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIKITSKIN------GDLNFV----- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S +        +     +   + F   +  E  A+ V   +  +
Sbjct: 57  ----ESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAANDVRDKIGTL 112

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L   P+   + + +   IS+ L            I+   EI  +    +   E   +
Sbjct: 113 --SLPSKPEIEKISSDSGSAISLFLY-------SKDKIQLMREINDKIKPFLQRVEGVGK 163

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  E  P+ LR+       ++      N  +                 + 
Sbjct: 164 IEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYIIKGYFE 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  E+S + +                            F     NI           +
Sbjct: 224 ATNLEELSNLRIKT------------------------GVFLSDIANISSLYEDEKQSAL 259

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    I+       +L           +            S  
Sbjct: 260 YEGKEGVLLELGKITNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQV 319

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L L+++F+ +      L+A  +I  ++I T  ++ LLG  L   +   + L
Sbjct: 320 IFDMVLGIFLTLVIVFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTL 379

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLD--MGFSRAYSTIFDSNITALIATVVLFFF 480
            IG+ +D  I+V E I ++ +    +  +         +  +I    +   I    +   
Sbjct: 380 SIGIFIDDAIVVIENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSI 439

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G       I++   I+IS   ++ ++ ++    +  K+ K  +        +      +
Sbjct: 440 SGLFFNALGISVASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENL 499

Query: 541 QF 542
            +
Sbjct: 500 LY 501



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 7/200 (3%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                      V   +     +I    +I         I + L +     V+   + ++I
Sbjct: 274 TNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVI 333

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                      L A   +   I  T     L G + N     A+   IG  ++D +VV  
Sbjct: 334 VFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI- 392

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +N+     +          INE     +  S+      +P++      G    +  I
Sbjct: 393 ---ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGI 449

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +A GIV++   S+F+   I
Sbjct: 450 SVASGIVISFLVSVFLIPSI 469



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 93/256 (36%), Gaps = 9/256 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +++  S++                KN  V++     D         ++    
Sbjct: 747 ISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQKLLLDNMD 806

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             +    ++         +  E ++   + V ++ + + + +   ++ +   L  + T+ 
Sbjct: 807 KILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFILPLIIMITMP 866

Query: 702 LDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           L     ++G F + G  F+L  + A++ L G    + +++ D      K     +     
Sbjct: 867 LAFGGASIGLF-ITGHNFSLFVLIAIILLFGMVGKNAILLVDVAN---KKCHEGLDPDKA 922

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  +    L   + T+ A   ++LP+A+    G       AI + FG++ +   ++ +  
Sbjct: 923 LLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLISSTLLTLLVVP 982

Query: 818 PILLFIYDWRAKNARI 833
            +  F +   +K  +I
Sbjct: 983 ALFKFCFKLDSKLRKI 998


>gi|326439943|ref|ZP_08214677.1| integral membrane protein [Streptomyces clavuligerus ATCC 27064]
          Length = 744

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 80/568 (14%), Positives = 159/568 (27%), Gaps = 56/568 (9%)

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            I     +  +        E                 L      +V     SD       
Sbjct: 127 TIVVGAVTSISDKQATDAEEALQKAIEDSPLLRESTSLGGSTPGHVQVAQISDEDVSNAE 186

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL---LGATLTLPSIAGIVLG 423
            I   +VL+VLF++        V      ++++LT+A L L                 LG
Sbjct: 187 MIAFPIVLVVLFLVFRGLVAAFVPLIGGIVSLLLTMAGLRLTTEFMTVSAGAMSLAFALG 246

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG 483
           +GL++D  +L+  R REE    +    ++    + A  T+  S +T   A   L  F   
Sbjct: 247 LGLSIDFGLLIVSRFREEVAAGRGRGEAVRQTVATAGRTVLFSALTVAAALAALTAFPHP 306

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
            +R   I   +++L +   A+  + A++  +       +      +           + M
Sbjct: 307 YLRSMGIAGVITVLSAALFALVGLPALLAVLGNKINALAPRRWQRATGTSAATEGRWRRM 366

Query: 544 ---------------------------RARFWGVGISI----LFSICSICLLFTHGLNYG 572
                                        RF GV  S+      +      L     + G
Sbjct: 367 ASGVMRRPGLFAVIATGVLLLIASPLAGVRFTGVDPSLLPQETSAGRVAADLARDFEDPG 426

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                 +           L+     +E +   +     F+ +           G+ +   
Sbjct: 427 TAPLQIVLTTDGTPDAARLADYARKIEDVPGIESVGAPFELDGRHWEIDAVPAGNPLDDP 486

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK--W 690
               + K +       +    T          +  K  +   I    + + +   F    
Sbjct: 487 AQDAVEKVRELTAPYTANFTGTTADYLAQEESIGDKLPLAAAI-LAGVTLLLLFAFSGAI 545

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTA-----------VAAVLTLIGYSVNDKVV 739
              L A+    L      GF      + NL             +       G S +  V 
Sbjct: 546 VLPLMALVMNTLSTGAAFGFLVWVFQDGNLGFSAQSGLEATTPLLVFALAFGLSTDYNVF 605

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI--SVLPMAVWGGSVIGSF 797
           +  R+++        +S R+ + + ++ T    + TS A      V  +A      I   
Sbjct: 606 LLSRIKE---ARAQGLSEREAVAQGLSRTGS--IVTSAAVLFCVPVGALAASRLVFIQEL 660

Query: 798 AIPMAFGIVVA-ASSSIFIAAPILLFIY 824
            +  AF ++V        +   ++  + 
Sbjct: 661 GLGAAFAVLVDATIVRALLVPSLMALLG 688



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 22/246 (8%), Positives = 79/246 (32%), Gaps = 11/246 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              ++  V           +  ++                 +      L+   +    + 
Sbjct: 100 SRPEVKQVVDASSPEAGAALVSRDGRSTIVVGAVTSISDKQATDAEEALQKAIEDSPLLR 159

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
             +++  +     ++++          +I+   +L+ +++ F+    + A   LI  I  
Sbjct: 160 ESTSLGGSTPGHVQVAQISDEDVSNAEMIAFPIVLVVLFLVFRGL--VAAFVPLIGGIVS 217

Query: 707 TLGFFALFGIEFNLTAV------AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            L   A   +      V       A    +G S++  +++  R R+ +          + 
Sbjct: 218 LLLTMAGLRLTTEFMTVSAGAMSLAFALGLGLSIDFGLLIVSRFREEVAAGRGRG---EA 274

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           + +++       +++++    ++  +  +    + S  I     ++ AA  ++     +L
Sbjct: 275 VRQTVATAGRTVLFSALTVAAALAALTAFPHPYLRSMGIAGVITVLSAALFALVGLPALL 334

Query: 821 LFIYDW 826
             + + 
Sbjct: 335 AVLGNK 340


>gi|319897617|ref|YP_004135814.1| multidrug efflux system protein [Haemophilus influenzae F3031]
 gi|317433123|emb|CBY81497.1| multidrug efflux system protein [Haemophilus influenzae F3031]
          Length = 1032

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 151/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 15  RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 56

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 57  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 116

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 117 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 174 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSAPAVMSALSANNVQTAAGNDNGYYVSYRN 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 234 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKESD 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 274 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 334 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E +    ++ ++ F +  +G       +    I  +     +
Sbjct: 394 LALILAIGLVVDDAIVVLENVDRHIKEGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 453

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++LIS   A+++   M   +++     + 
Sbjct: 454 ALMGGITGTLFKEFALTLAGAVLISGIVALTLSPMMSSKLLKSNAQPTW 502



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 84/250 (33%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 770  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGTSSGDAIAWLQQQAND 829

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 830  NLPQ-GYTYDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 884

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF + G   N+ +   ++TL+G      +++ +  ++    Y  
Sbjct: 885  VPLAVSGALVSLNLLSFFGIAGTTLNIYSKVGLITLVGLITKHGILMCEVAKEEQLNYGK 944

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSF--AIPMAFGIVVAAS 810
            +    + I  +    L   + T+ A    ++P +   G   +  F   I +  G+ +   
Sbjct: 945  TR--IEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSMGIVIVAGLSIGTI 1002

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 1003 FTLFVLPVVY 1012



 Score = 46.2 bits (107), Expect = 0.023,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 75/187 (40%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 307 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 364 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENV---DRHIKE 420

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  ++++  
Sbjct: 421 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVLISGI 480

Query: 811 SSIFIAA 817
            ++ ++ 
Sbjct: 481 VALTLSP 487


>gi|260581723|ref|ZP_05849520.1| cation/multidrug efflux pump [Haemophilus influenzae NT127]
 gi|260095316|gb|EEW79207.1| cation/multidrug efflux pump [Haemophilus influenzae NT127]
          Length = 1032

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 15  RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 56

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 57  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 116

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 117 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 174 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 234 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKEND 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 274 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 334 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 394 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 453

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 454 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 502



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 86/250 (34%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 770  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGISSGDAIAWLQQHATD 829

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 830  NLPQ-GYTFDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 884

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF++ G   N+ +   ++TL+G      +++ +  ++    Y  
Sbjct: 885  VPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLNYGK 944

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVVAAS 810
            +    + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ +   
Sbjct: 945  TR--IEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLSIGTI 1002

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 1003 FTLFVLPVVY 1012



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 307 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 364 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 420

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 421 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 480

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 481 VALTLSPMMSSKLLKSNAKP 500


>gi|256391525|ref|YP_003113089.1| MMPL domain-containing protein [Catenulispora acidiphila DSM 44928]
 gi|256357751|gb|ACU71248.1| MMPL domain protein [Catenulispora acidiphila DSM 44928]
          Length = 730

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/549 (13%), Positives = 174/549 (31%), Gaps = 48/549 (8%)

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
           A  +   +  G    +       A   A    +    + +               +I   
Sbjct: 138 AAQVIVPLNLGNDGWNKLPDTIKAVKAAMGPASAGEKVYVTGPMGEAADEADSFKNINGS 197

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL-----PSIAG 419
              I  G+V+++L +         +   S    + +   ++ LL     L      +   
Sbjct: 198 LTYITLGVVILILLIAYRSPILWFIPILSAGGALFVGEGIIYLLAKHAGLTVNGQAAFIL 257

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +VL +G   D  +L+  R REE R+ +    ++     RA   +  S+ T  ++ ++L  
Sbjct: 258 VVLLLGAGTDYALLLIARYREELRRYEDRHEAMAHALHRAGPALVASSTTVAVSMLILLV 317

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIF---IIRYKKMKSIDINPLSRFFLIPD 536
               + +G    + + +L+ +   ++++ A+++     I +    ++     ++  +   
Sbjct: 318 AEMNSTKGMGPVLAIGVLVDLLAMLTLMPALVVICGRWIFWPVKPTVGSEEPTQHGVWAR 377

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG-------------- 582
                 +R R   V  ++L  I +  +   H            +                
Sbjct: 378 IGKRIAVRPRTVWVATALLLLIGAAGMTQLHAHQMASADNFVNKPDSVVGAELQARYFPP 437

Query: 583 --------------VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                         V A      +V   +  S+       Q   G   ++  +   P DS
Sbjct: 438 SSGQSLDIIGNAAKVDAVTAALKTVPGIDPSSVGTPTTVPQQIVGGHFYVEAMPKDPADS 497

Query: 629 VAQTRVLEMVKKKITE-IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            A    +  V+  +       + + +   +   +           + I+ IA+ I + + 
Sbjct: 498 NAAKDTVARVRTALRAIPGAEAKVGSGSAMLVDVDHATRHDNEWIIPITLIAVFIILGLL 557

Query: 688 FK-WYFALGAITTLILDITKTLGFFALFGIEF------NLTAVAAVLTLIGYSVNDKVVV 740
            + +   L  I T+IL +  +LG  AL    F          + A + L+   ++  + +
Sbjct: 558 LRAFVAPLLLIITVILSLGASLGLSALAFKAFGWNGVDTSMPLYAFVFLVALGIDYNIFL 617

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
             R+R+      T           ++ T G   +  +    +   +A             
Sbjct: 618 MTRIREESVRRGTRRGAL----VGLSATGGVITWAGLVLAATFGVLAGLPIVTFAEIGFA 673

Query: 801 MAFGIVVAA 809
           +A G+++  
Sbjct: 674 VALGVLLDT 682



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 68/203 (33%), Gaps = 9/203 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                V   +           T    E      S + I   +  + +  + +++ I  R 
Sbjct: 157 DTIKAVKAAMGPASAGEKVYVTGPMGEAADEADSFKNINGSLTYITLGVVILILLIAYR- 215

Query: 689 KWYFALGAITTLILDITKTLGFFALF----GIEFN-LTAVAAVLTLIGYSVNDKVVVYDR 743
                   I +    +    G   L     G+  N   A   V+ L+G   +  +++  R
Sbjct: 216 SPILWFIPILSAGGALFVGEGIIYLLAKHAGLTVNGQAAFILVVLLLGAGTDYALLLIAR 275

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
            R+ ++ Y       + +  +++      V +S    +S+L + V   +        +A 
Sbjct: 276 YREELRRYEDRH---EAMAHALHRAGPALVASSTTVAVSMLILLVAEMNSTKGMGPVLAI 332

Query: 804 GIVVAASSSIFIAAPILLFIYDW 826
           G++V   + + +   +++    W
Sbjct: 333 GVLVDLLAMLTLMPALVVICGRW 355


>gi|313885818|ref|ZP_07819561.1| heavy metal efflux pump, CzcA family [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924722|gb|EFR35488.1| heavy metal efflux pump, CzcA family [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 1035

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/694 (9%), Positives = 189/694 (27%), Gaps = 51/694 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   ++ +L+ ++  +G L            +  P   P               ++    
Sbjct: 9   QRPIYVTVLFILLTVLGYLS-----FKSLSAELMPKFTPPLL---------NVQIIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   L   ++E+ S ++          +  + I +SF      +    +    L  
Sbjct: 55  SPSEVENSLTQKAEEVLSSMEGIDQMQSYSFEGMSMIMVSFDFGTDIDKAMTEAQNRLAA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             ++L  +     +   +  E  I++      +    + E    + ++ + ++   +   
Sbjct: 115 KRAELPREVFAPRISKVSVDEKPILIL---SARADIGSTELYDLVDKRIVPELSHIKGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    D  R++    T   +       N             + +     
Sbjct: 172 NVDLVGGVEREIQINLDKGRMQDFGITPMMVQGAIRASNLDFPTGYLQSDQTQMAVRLSG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E+                      +    +            +   +   +   
Sbjct: 232 KITSIEEL--------------------RRLILRNVSGTPIRLEDVAEVVDGVKDPVKMG 271

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETA-GILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +            ++  +     E     +  +    +       V +        + S
Sbjct: 272 RVNGQEAILLNILKQSDANALQVSEAVGKQIQNLEEQYASEGLKVEVAQDTTTFTRNAIS 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +V+ + +   +  L+    + ++++ +   + +   TL + S+  +
Sbjct: 332 SVLTDLLLAILLVSLVILLFLHNVRNALIVMVVVPVSLVSSFIGMRIFDFTLNMMSLLAL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L IG+ VD  I+V E +       ++   +     +    T+    +  ++  + + F 
Sbjct: 392 SLVIGVLVDDAIVVIENVYRHMEMGKNRVRATWDALNEIGLTVVSVTLVLVVVFLPIIFT 451

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIR----------YKKMKSIDINP 527
                  +R F   + +SIL S+  A+++V  +   +             + +   +   
Sbjct: 452 NSLVSDILRQFCAVIVISILFSLLAALTLVPLLTSRLGNIQPLRDDRPLGRMLTGFERGI 511

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 I                 + +L +   +             +    +  +    
Sbjct: 512 SRFANGISSLTRWGLSHRWALAGIVVVLMAAVLMLFPLGFINFEFQPYMDRQECIIQLEM 571

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P D+S+  SN    +  +   Q  + EK   +           +               P
Sbjct: 572 PKDISMTESNQLVRKAENWLMQRPEVEKVVTMVGLTSDNSQSNKGTPYLAELDVKLRKTP 631

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             T      +   ++  L+   +    +S    +
Sbjct: 632 EGTEAYVARIRKPLTDYLVDARVNVYSVSMTGTV 665



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 79/204 (38%), Gaps = 7/204 (3%)

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWY 691
             + +    +++E      +Q       K   + +      +++S + + L  + +   W 
Sbjct: 824  AIAKQFMSQLSEEQMPQGVQIQTAGDMKKMSDSMSVLTTAILLSLLFIYLALVLLYNNWT 883

Query: 692  FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              L  +  + L I   L   A+     ++ A+  ++ LIG    + +++ D   +     
Sbjct: 884  DPLVVMIAIPLSIVGALLALAMSNTAMSIYAMLGMVMLIGLVAKNAILLVDFANE---AR 940

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
               +   + + +++       + T+++  I +LP+A+    G  +    A  +  G+ ++
Sbjct: 941  GEGLPVDEALIQAVKLRTRPILMTALSTIIGMLPVALSRGSGAELRTGMAWVIIGGMALS 1000

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               ++ +   +    +  +  +A+
Sbjct: 1001 TLLTLIVVPALYKAFHARQRTSAK 1024



 Score = 43.1 bits (99), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/123 (13%), Positives = 47/123 (38%), Gaps = 6/123 (4%)

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
             +F    N+ ++ A+  +IG  V+D +VV + +    +      +       ++NE   
Sbjct: 376 MRIFDFTLNMMSLLALSLVIGVLVDDAIVVIENV---YRHMEMGKNRVRATWDALNEIGL 432

Query: 771 RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             V  ++   +  LP+         ++  F   +   I+ +  +++ +   +   + + +
Sbjct: 433 TVVSVTLVLVVVFLPIIFTNSLVSDILRQFCAVIVISILFSLLAALTLVPLLTSRLGNIQ 492

Query: 828 AKN 830
              
Sbjct: 493 PLR 495


>gi|310829085|ref|YP_003961442.1| hypothetical protein ELI_3520 [Eubacterium limosum KIST612]
 gi|308740819|gb|ADO38479.1| hypothetical protein ELI_3520 [Eubacterium limosum KIST612]
          Length = 419

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 119/375 (31%), Positives = 214/375 (57%), Gaps = 29/375 (7%)

Query: 142 EISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSR 201
            + +     +   + S  ++ ++  I++R+D +G+SE+ + + G  RI + +P  QD  +
Sbjct: 56  NVVLQAEATDDSGITSEKMDSTVAAIKKRVDSMGVSEAQVSKQGEDRIRVSIPSVQDQQQ 115

Query: 202 LRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANF 261
              ++G TA++ F                             + +V ++G  +  + A  
Sbjct: 116 ALDMIGKTAQLEF--------------------------VGPDGEVILTGKDVVDSKAVQ 149

Query: 262 DPKT---HKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQ 318
              +    + VV + F++ G + F + T+  + + +++ LD  V+++P +N AI +G+A 
Sbjct: 150 QKSSSGLEEAVVTLKFNDEGTQLFADATQKYLNQQISIKLDDEVISSPKVNVAITNGEAV 209

Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378
           I G   +E AG LA ++R G+LP+KL+ +E   +G  LG DS+ +   A   G+  ++LF
Sbjct: 210 IEGMADMEEAGNLAELIRGGALPVKLSPIEVTTIGPTLGQDSLNQSLIAGAIGIAAVLLF 269

Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERI 438
           M+V+Y   G +AD ++ + ++L L L+     TLTLP IAGI+L +G+AVD+N+++ ERI
Sbjct: 270 MLVMYRGLGFIADLALIIYIMLDLILMVFANVTLTLPGIAGIILSVGMAVDANVIIFERI 329

Query: 439 REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILI 498
           ++E+R  +S+  ++D GF RA  TI DSN+T LIA  VLFF G G+V+GFA+T+ L I++
Sbjct: 330 KDESRSGKSINAAIDAGFKRAMGTIIDSNVTTLIAGFVLFFMGSGSVQGFAVTLILGIIV 389

Query: 499 SMFTAISIVRAMMIF 513
           S+ TA+ I + +   
Sbjct: 390 SLLTAVIITKHLTKL 404



 Score =  120 bits (299), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 28/162 (17%), Positives = 74/162 (45%), Gaps = 4/162 (2%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
             +GP + ++ + + ++   I   A+L+++ + ++      A   LI+ I   L      
Sbjct: 241 TTIGPTLGQDSLNQSLIAGAIGIAAVLLFMLVMYR-GLGFIADLALIIYIMLDLILMVFA 299

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            +   L  +A ++  +G +V+  V++++R++   +   +  S    ID      +G  + 
Sbjct: 300 NVTLTLPGIAGIILSVGMAVDANVIIFERIKDESR---SGKSINAAIDAGFKRAMGTIID 356

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           +++   I+   +   G   +  FA+ +  GI+V+  +++ I 
Sbjct: 357 SNVTTLIAGFVLFFMGSGSVQGFAVTLILGIIVSLLTAVIIT 398



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 56/173 (32%), Gaps = 6/173 (3%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV---DED 63
              +  +I    L            +  +      + +  GLDL GG ++VL+    D+ 
Sbjct: 8   KKTITLVIFIAILAFCGYTLFHGLSVGIYDIGNIGDHVHYGLDLTGGVNVVLQAEATDDS 67

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGV 122
              +  +      ++  +   G+    + +   ++I +S    + ++   D +    Q  
Sbjct: 68  GITSEKMDSTVAAIKKRVDSMGVSEAQVSKQGEDRIRVSIPSVQDQQQALDMIGKTAQLE 127

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +  D +  L         ++    ++  +     ++ + E  +   D   
Sbjct: 128 F--VGPDGEVILTGKDVVDSKAVQQKSSSGLEEAVVTLKFNDEGTQLFADATQ 178


>gi|187928845|ref|YP_001899332.1| CzcA family heavy metal efflux pump [Ralstonia pickettii 12J]
 gi|3913398|sp|P94177|CZCA_ALCSC RecName: Full=Cation efflux system protein CzcA
 gi|1785480|dbj|BAA11061.1| CzcA [Alcaligenes sp.]
 gi|187725735|gb|ACD26900.1| heavy metal efflux pump, CzcA family [Ralstonia pickettii 12J]
          Length = 1063

 Score =  123 bits (307), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/603 (10%), Positives = 152/603 (25%), Gaps = 66/603 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L         + +      +  +D  P                 +++ ++V+   
Sbjct: 13  RWLVLLAVFGMAGLGIFS----YNRLPIDAVPDI---------------TNVQVQVNTSA 53

Query: 65  F------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                      +    + + + L          R   +++T+ F D          V   
Sbjct: 54  PGYSPLETEQRVTYPIEVVMAGLPGLEQTRSLSRYGLSQVTVIFKDGTDVYFARQLVNQR 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRID 172
           +Q     L       +   +T      + +          D       +           
Sbjct: 114 IQEAKDNLPEGVVPAMGPISTGLGEIYLWTVEAEEGARKADGTAYTPTDLREIQDWVVRP 173

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           Q+       +         Q        RL     T   +       N++          
Sbjct: 174 QLRNVPGVTEINTIGGFNKQYLVAPSLERLASYGLTLTDVVNALNKNNDNVGAGYIE--- 230

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                G QYLV    +++                  + +I       +        ++  
Sbjct: 231 ---RRGEQYLVRAPGQVASED--------------DIRNIIVGTAQGQPIRIRDIGDVEI 273

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
              +           +           +     +      A +          +      
Sbjct: 274 GKELRTGAATENGKEVVLGTVFMLIGENSRAVSKAVDEKVASINRTMPEGVKIVTVYDRT 333

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                + +  K      A LV+++LF+ +   +  L+    I L ++ T   +     + 
Sbjct: 334 RLVDKAIATVKKNLLEGAVLVIVILFLFLGNIRAALITATIIPLAMLFTFTGMVNYKISA 393

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERI-----REENRKNQSVFCS-----LDMGFSRAYST 462
            L S+  +  GI   +D  +++ E         +    + +  S     +      A   
Sbjct: 394 NLMSLGALDFGII--IDGAVVIVENCVRRLAHAQEHHGRPLTRSERFHEVFAAAKEARRP 451

Query: 463 IFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +    +  +I  + +F      G      A T+ L++L +M  +++ V A +   I  + 
Sbjct: 452 LIFGQLIIMIVYLPIFALTGVEGKMFHPMAFTVVLALLGAMILSVTFVPAAVALFIGERV 511

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            +  +   L         +              ++   +C                +G I
Sbjct: 512 AEKENRLMLWAKRRYEPLLEKSLANTAVVLTFAAVSIVLCVAIAARLGSEFIPNLNEGDI 571

Query: 580 QLG 582
            + 
Sbjct: 572 AIQ 574



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+  GI  ++TA    + L G +V + +V+   +R    L     S    +
Sbjct: 915  FALTGGILALWIRGIPMSITAAVGFIALCGVAVLNGLVMLSFIR---SLREEGHSLDSAV 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   L   + T++ A +  +PMA+    G  V    A  +  GI+ + + ++ +  P
Sbjct: 972  RVGALTRLRPVLMTALVASLGFVPMAIATGTGAEVQRPLATVVIGGILSSTALTLLVL-P 1030

Query: 819  ILLFIYDWRAKNA 831
            +L  +   + ++A
Sbjct: 1031 VLYRLAHRKDEDA 1043



 Score = 45.1 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + ++I          AL   T + L +  T      + I  NL ++ A+    G 
Sbjct: 348 LEGAVLVIVILFLFLGNIRAALITATIIPLAMLFTFTGMVNYKISANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDR-MR------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++  VV+ +  +R      ++     T       +  +  E     ++  +   I  LP
Sbjct: 406 IIDGAVVIVENCVRRLAHAQEHHGRPLTRSERFHEVFAAAKEARRPLIFGQLIIMIVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    A  +   ++ A   S+ F+ A + LFI +    K  R+
Sbjct: 466 IFALTGVEGKMFHPMAFTVVLALLGAMILSVTFVPAAVALFIGERVAEKENRL 518


>gi|91774859|ref|YP_544615.1| heavy metal efflux pump CzcA [Methylobacillus flagellatus KT]
 gi|91708846|gb|ABE48774.1| Heavy metal efflux pump CzcA [Methylobacillus flagellatus KT]
          Length = 1031

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/520 (12%), Positives = 153/520 (29%), Gaps = 48/520 (9%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE------D 63
           +  ++  + LL+A    L +  +D FP                 +++ +++         
Sbjct: 14  IVVIVIALALLVAGVFALQRLSVDAFPDV---------------TNVQVQIATQSLGRSP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V  F+ +  +   + L          +   + ITL F DS         V   L  V 
Sbjct: 59  EEVERFITVPLEMSMTGLPGLTEMRSLNKNGLSIITLVFTDSTDVFFARQLVMERLMEVM 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-----HAIEQSMEIIRQRIDQIGISE 178
            ++       L   +T        + +              +E+           +    
Sbjct: 119 ERMPEGVTPILGPVSTGLGEVYQYTLDKPSDGDKDLSPADLMERRAVQDWVVRPLLRSIP 178

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +       + Q     +P R+        ++       N +  G +      +    
Sbjct: 179 GVAEINSLGGYVKQYQALVNPERMNHYGVKLQEVYSALARNNANSGGGIMPHYAEQYLIR 238

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              LV+D  +I  I +               V I  +            +++G       
Sbjct: 239 GVGLVQDLEDIRRIVIKEQNGTPIYMRDVADVQIGHEVRVGALVKNGDTESVGG------ 292

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                        +           +     +     +         +           +
Sbjct: 293 -----------IVMMIRGGNAKEVVSRIKERVEEINSKGMLPGGMQIVPFYDRSELVDAA 341

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                        LV++VLF+ +   +  L+   ++ L  ++T   ++  G +  L S+ 
Sbjct: 342 LGTVTRVLIEGIILVIVVLFLFLGDVRSSLIVVGTLILTPLITFMAMNYFGISANLMSLG 401

Query: 419 GIVLGIGLAVDSNILVNERIREE--NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           G+ + IGL VD +++V E       +RK +S    +    +   + +       ++  + 
Sbjct: 402 GLAIAIGLMVDGSVVVVENAFHHLGHRKGESKIRVVFEAAAEVATPVLFGVGIIILVFLP 461

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
           L       G      A T+ +++ +S+  ++++  AM  F
Sbjct: 462 LMTLQGMEGKMFAPLAYTIAIALFVSLVLSLTLTPAMSSF 501



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/212 (18%), Positives = 79/212 (37%), Gaps = 7/212 (3%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G+   +  +        A+  V  + ++              +IV      EL+   +  
Sbjct: 285 GDTESVGGIVMMIRGGNAKEVVSRIKERVEEINSKGMLPGGMQIVPFYDRSELVDAALGT 344

Query: 673 VIISAI-AMLIYIWIRF----KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
           V    I  +++ I + F        +L  + TLIL    T      FGI  NL ++  + 
Sbjct: 345 VTRVLIEGIILVIVVLFLFLGDVRSSLIVVGTLILTPLITFMAMNYFGISANLMSLGGLA 404

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
             IG  V+  VVV +    ++  +    S   ++ ++  E     ++      +  LP+ 
Sbjct: 405 IAIGLMVDGSVVVVENAFHHLG-HRKGESKIRVVFEAAAEVATPVLFGVGIIILVFLPLM 463

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
              G     FA P+A+ I +A   S+ ++  +
Sbjct: 464 TLQGMEGKMFA-PLAYTIAIALFVSLVLSLTL 494



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 694  LGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
              A+  L+L      G  ALF  G   ++ A    + L G +V + VV+   +R    L 
Sbjct: 893  FAALIILVLPFASIGGIVALFVTGEYLSVPASVGFIALWGIAVLNGVVLISYIR---SLR 949

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
                S  + I     +     + T+  A + ++P       G  V    A+ +  G++ +
Sbjct: 950  EEGRSQLEAITHGCAQRFRPVMMTATVAMLGLVPFLFATGPGSEVQRPLAVVVIGGLITS 1009

Query: 809  ASSSIFIAAPILLFIYD 825
               ++ +   +  +  +
Sbjct: 1010 TILTLVVLPTLYRWFEE 1026


>gi|315635896|ref|ZP_07891158.1| acriflavine resistance protein [Arcobacter butzleri JV22]
 gi|315479875|gb|EFU70546.1| acriflavine resistance protein [Arcobacter butzleri JV22]
          Length = 1008

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/599 (10%), Positives = 178/599 (29%), Gaps = 42/599 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + + +    L+      + +  +   P+        +    +G +         + +   
Sbjct: 10  ITTFMFVFALVFFGYTQIQKMPIAFLPNVDYPVVSVITTYDQGST---------EIIESK 60

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +E  S +    I      + Q+ +   F  S+  E  A+ V   +  V   L  +
Sbjct: 61  ITDKIEEAISGISGIDIIRSDTSKSQSIVIAQFELSKPVEEAANDVRDKVSTV--DLPTE 118

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
             K ++   +     I+    +    + +  +  +         +   E   +   +   
Sbjct: 119 ADKPIIEKFSSSSAPIITLFLSTK--LDNLDKLMLHANEVVKPILQSIEGVGKVEIAGFR 176

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
              +    D + L +      +++      N  K G          +        +  ++
Sbjct: 177 DKIIKIYPDTTLLSKYNLDLNELALKIDEENIKKDGGRVVQEKEELNISIDSDAINVEQL 236

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I +                                   + + +               
Sbjct: 237 ENIKIKD------------------------GVRLKDVATVQETIKDERTFANYNQQKGV 272

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
                  +  +     ++       +++         +          +    +    + 
Sbjct: 273 LLQVKKISGANEVNIAKSVREKIPYIKS-LSNDFDINLLFDTTNFIESTYKSVQFDLILG 331

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             L  +++F+ +    + ++A  S+ ++++  LA++     TL + ++  + L IG+ +D
Sbjct: 332 CFLASLIVFVFLRNFTFTIIAAISLPISILGVLAIMGWSNQTLNILTLTALTLSIGIIID 391

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVLFFFGGGAVR 486
             I+V E I ++    +S + +   G      +   I    +   I    +    G   +
Sbjct: 392 DAIVVIENIYKKLELGKSRYEAALEGVKEISFSVLAISAMLLAIFIPIANMSGIVGKFFK 451

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            F IT+  S++IS   AI+++  +   ++  K  K   +       +      +     +
Sbjct: 452 SFGITIVASVIISYIVAITVIPMISSLLVNPKHSKFYLMTESIFLSMDRIYKNLLTKAIK 511

Query: 547 FWGVG-ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
           F  V  IS         +L ++     +  +   Q  V+     ++S+      ++ I 
Sbjct: 512 FKFVTLISGFSIFAISIILSSNLGMVFMPKEDRSQFEVIIKANANISMEEMKKTTINIQ 570



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 99/245 (40%), Gaps = 14/245 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S+L ++   +++      ++   V +     D +A   ++ +V +   + +        E
Sbjct: 767  SSLININSKELASVIKRYDRQKQVTVGTDMKDGLALDTLINLVVENKDKWLLDGVTYTFE 826

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALF 714
                 +       G+  ++ + I + + +   ++     +  ++ + L  T       L 
Sbjct: 827  GDAKDMQDTSDAFGV-AIVAALIMIYLILASLYESPLQPIIIMSAMPLSFTGAFLGLYLA 885

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGR 771
             +  +L ++  +  L+G    +  ++ D   R R+N      SI+  + I ++    L  
Sbjct: 886  NMNMSLFSMMGLFLLLGLVGKNSTLIVDAANRNREN------SINLDEAIIQAGISRLRP 939

Query: 772  SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             + T+++  + +LP+A+    G S+    AI +  G++++   S+F+   +   I     
Sbjct: 940  ILMTTISMCLGMLPLALSVGEGSSIKAPMAISVISGLIISTMLSLFVVPALYKLIAPLDD 999

Query: 829  KNARI 833
            K  ++
Sbjct: 1000 KIRKL 1004



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 78/245 (31%), Gaps = 8/245 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +     V L  V +  E+++           +   L   +    + V   + +      I
Sbjct: 239 IKIKDGVRLKDVATVQETIKDERTFANYNQQKGVLLQVKKISGANEVNIAKSVREKIPYI 298

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +     I         I           ++   +A LI       + F + A  +L +
Sbjct: 299 KSLSNDFDINLLFDTTNFIESTYKSVQFDLILGCFLASLIVFVFLRNFTFTIIAAISLPI 358

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            I   L          N+  + A+   IG  ++D +VV + +    K      S  +   
Sbjct: 359 SILGVLAIMGWSNQTLNILTLTALTLSIGIIIDDAIVVIENI---YKKLELGKSRYEAAL 415

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVI----GSFAIPMAFGIVVAASSSIFIAAP 818
           + + E +  SV    A  +++         ++     SF I +   ++++   +I +   
Sbjct: 416 EGVKE-ISFSVLAISAMLLAIFIPIANMSGIVGKFFKSFGITIVASVIISYIVAITVIPM 474

Query: 819 ILLFI 823
           I   +
Sbjct: 475 ISSLL 479


>gi|255319113|ref|ZP_05360334.1| cation efflux system protein CzcA [Acinetobacter radioresistens
           SK82]
 gi|255303915|gb|EET83111.1| cation efflux system protein CzcA [Acinetobacter radioresistens
           SK82]
          Length = 1045

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 56/599 (9%), Positives = 157/599 (26%), Gaps = 59/599 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            W+++   +   +G+         +  +D  P                   +  + +   
Sbjct: 26  IWVMLFACIWIAVGIYS-----YQKLPIDAVPDITNTQ-----------VQINTQANGFT 69

Query: 65  F--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +   + +    +     R   +++T+ F D         ++   +Q +
Sbjct: 70  ALEVEQRITYPIENAMAGIPDLELTRSISRYGLSQVTIVFEDGTDIYWARQQINQRIQEI 129

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLS------QNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            ++L       +   +T                   D     A++           Q+  
Sbjct: 130 QAELPAQTSPIMSPVSTGLGEIYQWVLRAGPKAKKSDGTAYTAMDLREIQDWVVRPQLQR 189

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +               D + ++QL  +  ++       N ++          + +
Sbjct: 190 VQGVAEVNSIGGFEKNYVVSPDFNYMQQLNISLEQLQQALNQNNENRGAGYIEDNGQQLT 249

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                 + +  +I    +                         R         +     +
Sbjct: 250 VRIPGTLNNISDIENTLVT--------------------SSSGRAIRVSDIAQVSIGHDL 289

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
              G           I       +     +        ++                    
Sbjct: 290 RTGGATYNGEETVLGIAMMAMGENSRTVSKAVDAKIRNIQNSLPKGVFIETVYDRTSLVE 349

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +    +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  L S
Sbjct: 350 KAIKTVQKNLVEGAVLVIVILFLFLGNIRAALITACVIPLSMLFTLTGMAQKNISANLMS 409

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDS 466
           +  +  GI   VD  +++ E         Q            F  + +   +A   +   
Sbjct: 410 LGALDFGII--VDGAVVIVENCIRRLAHAQHLLKRPLTQSERFKEVFLAARQARRPLIFG 467

Query: 467 NITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +  L+  + +F   G         A+T+ L+++ +M  +I+ V A +   ++    ++ 
Sbjct: 468 QLIILVVYLPIFALSGIEAKMFHPMALTVVLALIAAMILSITFVPAAVALWVKGDIRETE 527

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                S        + + +            L  +  +              +G   + 
Sbjct: 528 SGWMTSLKKSYEKTLNVAYEYKAVVLTFAICLLVVTGVLTTKLGSEFAPQLGEGDFAVQ 586



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 81/222 (36%), Gaps = 9/222 (4%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            S++ S++  +   +   Q         + +          + + ++  +  T  +P    
Sbjct: 810  SIILSDVAKVASIEGINQVSRENGKRRMVITANVEGRDLGSFISDLQTQLKTYDLPSGYW 869

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGF 710
                     ++     +  + + ++ I + I +   F     +L   T +   +T  + F
Sbjct: 870  IEYGGQFENLASA-KTRMQIVIPLALITIFILLMAVFHNMKDSLLVFTGVPFALTGGVLF 928

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              L  I  +++A    + L G +V + +V+   +++    Y    +  + + +     L 
Sbjct: 929  LWLRDIPLSMSAGIGFIALSGVAVLNGLVMLTFIKELRLKY----NLHEAVWQGAILRLR 984

Query: 771  RSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
              + T+  A +  +PMA+    G  V    A  +  GI+ + 
Sbjct: 985  PVLMTACVASLGFVPMALATGTGAEVQRPLATVVIGGIISST 1026



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 79/263 (30%), Gaps = 13/263 (4%)

Query: 578 GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              +   + R + +S +        +          E    + +     +S   ++ ++ 
Sbjct: 264 NTLVTSSSGRAIRVSDIAQVSIGHDLRTGGATYNGEETVLGIAMMAMGENSRTVSKAVDA 323

Query: 638 VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGA 696
             + I   +P      T      +  + I+     ++  + + ++I          AL  
Sbjct: 324 KIRNIQNSLPKGVFIETVYDRTSLVEKAIKTVQKNLVEGAVLVIVILFLFLGNIRAALIT 383

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTTS 754
              + L +  TL   A   I  NL ++ A+    G  V+  VV+ +    R     +   
Sbjct: 384 ACVIPLSMLFTLTGMAQKNISANLMSLGAL--DFGIIVDGAVVIVENCIRRLAHAQHLLK 441

Query: 755 ISFRDL-----IDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIV 806
                      +  +  +     ++  +   +  LP+    G    +    A+ +   ++
Sbjct: 442 RPLTQSERFKEVFLAARQARRPLIFGQLIILVVYLPIFALSGIEAKMFHPMALTVVLALI 501

Query: 807 VAASSSIFIAAPILLFIYDWRAK 829
            A   SI      +        +
Sbjct: 502 AAMILSITFVPAAVALWVKGDIR 524


>gi|83943500|ref|ZP_00955959.1| AcrB/AcrD/AcrF family protein [Sulfitobacter sp. EE-36]
 gi|83845732|gb|EAP83610.1| AcrB/AcrD/AcrF family protein [Sulfitobacter sp. EE-36]
          Length = 1059

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/463 (11%), Positives = 122/463 (26%), Gaps = 28/463 (6%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           LE          L    +   + +        +  +    + L F      +    KV  
Sbjct: 52  LEGISPSDAERLLIEPMESEFAAIAGLEKIQSNASEGYANVQLEFTPGGDIDEALRKVRE 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               V   L  D     +         I+ +  +           + +      + I   
Sbjct: 112 AADRVEGDLPEDAYDLTVTEINTALFPIITALISGPVPERTLNAIADDA----QEAIEGL 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
              ++          L    DP+  +    +  ++                         
Sbjct: 168 SGVLEVEIGGARDEFLEVLIDPTVFQTYNLSFDELIGQL--------------------Q 207

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            N  L+      +G            +  + V++I     G           + +     
Sbjct: 208 RNNRLIAAGAIETGGGRIVLKVPGLIEDLQDVMEIPVKVRGNTVVTFEDVATVRRTFQDP 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +            ++  +   T+         LR            +        
Sbjct: 268 TGYARIDGQPALALEVKKRSGANIIETVAATRAALEELRKDWPESIEVTYLQDQSEQVET 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
             S  +        LV+IV+   +      ++   +I    ++ +  L  +G T+ +  +
Sbjct: 328 LLSDLEANVIAAVLLVMIVIVAALGLR-SAILVGLAIPGAFLVGVTALWAMGFTMNIVVL 386

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L +G+ VD  I+  E      ++      +      R    I  S  T L     L
Sbjct: 387 FSLILVVGMLVDGAIVTVELADRRLQEGDDAQTAYAYAAKRMAWPIIASTATTLSVFFPL 446

Query: 478 FFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
            F+ G     ++   IT+ L++  S+F A+  +  +   I + 
Sbjct: 447 LFWTGMVGEFMKFLPITVILTLFASLFMALIFIPVLGGLIGKR 489



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/264 (12%), Positives = 83/264 (31%), Gaps = 13/264 (4%)

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVA 630
             I  K      V       +   R+  +      I  Q     +              A
Sbjct: 240 MEIPVKVRGNTVVTFEDVATV--RRTFQDPTGYARIDGQPALALEVKKRSGANIIETVAA 297

Query: 631 QTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW 690
               LE ++K   E + ++ +Q+       +  +L    I  V++  I ++  + +R   
Sbjct: 298 TRAALEELRKDWPESIEVTYLQDQSEQVETLLSDLEANVIAAVLLVMIVIVAALGLRSAI 357

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L      ++ +T         G   N+  + +++ ++G  V+  +V  +      + 
Sbjct: 358 LVGLAIPGAFLVGVTALWA----MGFTMNIVVLFSLILVVGMLVDGAIVTVE---LADRR 410

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
                  +     +        + ++        P+  W   ++G F   +   +++   
Sbjct: 411 LQEGDDAQTAYAYAAKRMAWPIIASTATTLSVFFPLLFW-TGMVGEFMKFLPITVILTLF 469

Query: 811 SSIF---IAAPILLFIYDWRAKNA 831
           +S+F   I  P+L  +   R    
Sbjct: 470 ASLFMALIFIPVLGGLIGKRQPQN 493



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 87/231 (37%), Gaps = 21/231 (9%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            ++  +V ++      +     +  +++ +        +  +     +   E +   +   
Sbjct: 802  DEKRVVTIEANVAPGLLVNDQVTALQQALDAADLPDGVSYSFAGEAQDQTEAMVFLVGAF 861

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIG 731
            + +   ML+ + ++F  +Y A   ++ +I  +   L    + G  F +      ++ L G
Sbjct: 862  VSAIALMLVILVLQFNSFYQAFVVMSAIIFSVAGVLLGLIVTGRPFGVVMGGIGIIALAG 921

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM----- 786
              VN+ +V+ D       L ++ +  R+   ++  + L   + TS+   + ++PM     
Sbjct: 922  IVVNNNIVLIDTYND---LRSSGMHPREAALRTGAQRLRPVLLTSITTALGLMPMVLGAN 978

Query: 787  -------AVWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                    V+G          +  +  G+VVA   ++ I  P +L     R
Sbjct: 979  LNFFTREIVFGAPSTQYWTELSSAIVGGLVVATLLTL-ILTPAMLMFGQKR 1028


>gi|77458623|ref|YP_348128.1| heavy metal efflux pump CzcA [Pseudomonas fluorescens Pf0-1]
 gi|77382626|gb|ABA74139.1| heavy metal RND efflux transporter, CzcA family [Pseudomonas
           fluorescens Pf0-1]
          Length = 1056

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/577 (10%), Positives = 152/577 (26%), Gaps = 50/577 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L    +   G+          + +D  P       I                  
Sbjct: 12  NRFLVLLATLFVTGWGVWSV-----QNTPIDALPDLSDVQVI---------IRTPYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D   +     +V  +L  +
Sbjct: 58  PQIVENQVTYPLTTTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTDQYWARSRVLEYLSQI 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    K  L    T                     +           ++       +
Sbjct: 118 QSRLPAGVKPGLGPDATGVGWIYQY-ALVDRSGGHDLAQLRALQDWFLKFELKTLPDVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP RL  L  T A++       N    G +  +            
Sbjct: 177 VATVGGMVKQYQVQPDPVRLASLGITLAQVREAIGKANQETGGAVLEMAETEFIVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++                                 G           +     +      
Sbjct: 237 LKT-------------------LDDFRAIPLKLGAGGVPVTLGDVATVQTGPDMRRGITE 277

Query: 303 LTAPV-INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           L         +   ++  +   TI         +++   P    +           +   
Sbjct: 278 LDGQGETVGGVVILRSGKNARETIAAVKAKLDDMKSSLPPGVEIVTTYDRSKLIDRAVEN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  S+ + V++   ++   G    + S+ GI 
Sbjct: 338 LSHKLLEEFIVVALVCGIFLWHLRSSLVAIISLPVGVLIAFIVMRYQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + IG  VD+ +++ E   ++             K +  +  +    +     +F   +  
Sbjct: 398 IAIGAMVDAAVVMIENAHKKIEAWYAANPGQALKGERHWQVMTDAAAEVGPALFFCLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   ++++V  +M + IR +         
Sbjct: 458 TLSFIPVFTLQAQEGRLFGPLAFTKTYAMAAAAGLSVTLVPVLMGYWIRGRIPDERHNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                 I        +R   + + +++L  + +   +
Sbjct: 518 NRWLIRIYQPALDAVLRRPKFTLLVALLVFVSAAWPI 554



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 88/282 (31%), Gaps = 15/282 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I + +             + +   +   + L ++     +     +  +N     
Sbjct: 763  LARFPINIRYPREWRDSPGALEQLPIYTPSGSQITLGMLAKIKVTDGPPMLKSENARPSG 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               + ++ +   SV       + ++   +     +         + +  L  K +V   +
Sbjct: 823  WVYIDVRGRDIASVVADLRRAVNEQVKLQPGMSLSYSGQFEFLERANARL--KLVVPATL 880

Query: 676  SAIAMLIYIWI-RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
              I +L+Y+   RF     + A     L       F  L G   ++      + L G S 
Sbjct: 881  LIIFVLLYLTFARFDEALLIMATLPFALSGGA--WFLYLLGYNLSVATGVGFIALAGVSA 938

Query: 735  NDKVVVYDRM------RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
               V++   +      R+ +  ++        I +   + +     T       +LP+ +
Sbjct: 939  EFGVIMLLYLKNAWAEREELGDHSERG-LVAAIREGAVQRVRPKAMTVAVIIAGLLPILL 997

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                G  V+   A PM  G+V A   S+F+       +   R
Sbjct: 998  GSGTGSEVMSRIAAPMVGGMVTAPLLSLFVIPAAYRLMRRRR 1039



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 78/231 (33%), Gaps = 14/231 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    L   +       A    L+ +K  +   V + T  +   +  +    L  K +  
Sbjct: 286 GGVVILRSGKNARETIAAVKAKLDDMKSSLPPGVEIVTTYDRSKLIDRAVENLSHKLLEE 345

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I+ A+   I++W       +L AI +L + +          G+  N+ ++  +   IG 
Sbjct: 346 FIVVALVCGIFLW---HLRSSLVAIISLPVGVLIAFIVMRYQGLNANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVL 784
            V+  VV+ +      +         + +      ++  +  E      +  +   +S +
Sbjct: 403 MVDAAVVMIENAHKKIEAWYAANPGQALKGERHWQVMTDAAAEVGPALFFCLLIITLSFI 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+          F   A    + +  AA  S+ +   ++ +    R  + R
Sbjct: 463 PVFTLQAQEGRLFGPLAFTKTYAMAAAAGLSVTLVPVLMGYWIRGRIPDER 513


>gi|329926806|ref|ZP_08281214.1| export membrane protein SecD [Paenibacillus sp. HGF5]
 gi|328939006|gb|EGG35374.1| export membrane protein SecD [Paenibacillus sp. HGF5]
          Length = 416

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 91/213 (42%), Gaps = 6/213 (2%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                G+              +  +      + ++ VG  +  + + K +   +I+++A+
Sbjct: 196 TAQITGNYSLDEAKQIRDTINLGALPLKLVEKYSQSVGATLGMQSLTKTLEAGLIASVAI 255

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV 740
           L+++ IR++    L A   LIL     +  F        L  +AA +  IG +V+  ++ 
Sbjct: 256 LLFMIIRYRVP-GLLASFALILHTWLLILIFVWADFTLTLPGIAAFILGIGMAVDANIIT 314

Query: 741 YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
           Y+R+R+ +K   T  S    +      +L   + +++   +    M  +G   +  FA+ 
Sbjct: 315 YERIREEIK---TGKSVPSAVKSGGKSSLRAIMDSNLTTILVAAVMFGFGTGAVKGFALV 371

Query: 801 MAFGIVVAASSSIFIAAPILLFIYD--WRAKNA 831
           +   I+V+ +++++ +  +L  + +  W  K +
Sbjct: 372 LILEIIVSIATNVYFSRFLLNLLVNIGWARKPS 404



 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 109/384 (28%), Positives = 195/384 (50%), Gaps = 19/384 (4%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
              QV   A++++ + +++R D +G SE  +   G++RI +++ G  D + +R+ +   A
Sbjct: 50  EGQQVTKEALQETAKSLQKRADAMGTSEPEVTPEGANRIRLKVAGVTDEAEVRKTMKEPA 109

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
            ++F         + F                   K+E+ G       A+         +
Sbjct: 110 NLTFRSNDGCKEGEEF------------------CKIELRGDDFVENGASVAYDQLNQPM 151

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
                +    +F E+T   +G+ LA+ +D ++L+AP +   +  G AQI+GN++++ A  
Sbjct: 152 IDIKVKDKG-KFAEITERLLGQELAIFMDDQLLSAPTVRAVLTDGTAQITGNYSLDEAKQ 210

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           +   +  G+LP+KL     ++VGA LG  S+ K   A +   V I+LFMI+ Y   GL+A
Sbjct: 211 IRDTINLGALPLKLVEKYSQSVGATLGMQSLTKTLEAGLIASVAILLFMIIRYRVPGLLA 270

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
            F++ L+  L + +      TLTLP IA  +LGIG+AVD+NI+  ERIREE +  +SV  
Sbjct: 271 SFALILHTWLLILIFVWADFTLTLPGIAAFILGIGMAVDANIITYERIREEIKTGKSVPS 330

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           ++  G   +   I DSN+T ++   V+F FG GAV+GFA+ + L I++S+ T +   R +
Sbjct: 331 AVKSGGKSSLRAIMDSNLTTILVAAVMFGFGTGAVKGFALVLILEIIVSIATNVYFSRFL 390

Query: 511 MIFIIRYKKMKSIDINPLSRFFLI 534
           +  ++     +      +    + 
Sbjct: 391 LNLLVNIGWARKPSHYGVKERDIR 414



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 15/124 (12%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE---- 62
             I+  +   + + I +    P  + D          + LGLDL+GG  ++ E +     
Sbjct: 2   KRIISFVGTVLVITILMAVTTPGLLKD----------VRLGLDLKGGFEILYEAEPLMEG 51

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQG 121
                  LQ  +  L+      G     +     N+I L  A    +  +   +      
Sbjct: 52  QQVTKEALQETAKSLQKRADAMGTSEPEVTPEGANRIRLKVAGVTDEAEVRKTMKEPANL 111

Query: 122 VNSK 125
               
Sbjct: 112 TFRS 115


>gi|315179205|gb|ADT86119.1| Cation/multidrug efflux pump [Vibrio furnissii NCTC 11218]
          Length = 1026

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/522 (11%), Positives = 140/522 (26%), Gaps = 43/522 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +    +L  ++  +    A          +  P                   +  +    
Sbjct: 10  SRARTMLTLLVFILA---AGVLTYLTIPKESSPDITIPIIY---------VSVTHQGISP 57

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D     +    ++    ++       +  +    I L F            V   +    
Sbjct: 58  DDAERLIARPLEQELRAIEGVKEMTANAAEGYASIVLEFNVGVDLTKAMADVREAVDLAK 117

Query: 124 SKLNVDPKKNLLVTTT-EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            KL  D  + ++   T   E  ++             ++ +    R   D++      ++
Sbjct: 118 PKLPADSDEPIVNEVTLASEQPVLSVVLYGTVPERGIVQIA----RALRDKLESYRQVLE 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    DP  +         +     L N           + R S     +
Sbjct: 174 VDIAGDREDIVEIVVDPLLMESYGLDQGDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSV 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                ++                    +++     G R         + +          
Sbjct: 234 FNSLKDV--------------------LELPVKVEGKRVITFGDIATVRRAFRDPESFAR 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILA--AMLRAGSLPIKLNIVEERNVGADLGSDS 360
           L            +A  +   T+     +   A  R       L               +
Sbjct: 274 LDGKSAVVLDVKKRAGENIIDTVALVKTVMHEAQKREDWPNNLLVKYTWDESKDVQLMLN 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +        LV+IV+  I+       +   SI  + +  L +LS+ G T+ +  +  +
Sbjct: 334 DLQNNILSAILLVVIVIIAILGVRT-AFLVGVSIPGSFLTGLLVLSVFGLTVNIVVLFSL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++ +G+ VD  I+V E      ++      +      R    I  S  T L A   L F+
Sbjct: 393 IMAVGMLVDGAIVVTEFADRRMQEGMPRSEAYRDAAKRMAWPITASTATTLAAFAPLLFW 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
               G  ++   +T+  ++  S+  A+  V  +   + R + 
Sbjct: 453 PDITGEFMKFLPLTLIATLAASLVMALLFVPVLGSLMGRPQH 494



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 69/174 (39%), Gaps = 21/174 (12%)

Query: 672  GVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAV-AAVLTL 729
              +++ +AM + +  +F  +Y A   ++ ++           +F   F +      V+ L
Sbjct: 857  AFVVALVAMALILITQFNSFYQAFLILSAVLFSTVGVFAGLLIFHKPFGVIMSGIGVIAL 916

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
             G  VN+ +V+ D      +L    ++ ++ I ++  + L   + T++   + +LPM + 
Sbjct: 917  AGIVVNNNIVLIDTYN---QLRKRGLNPQEAILRTGVQRLRPVMLTTITTILGLLPMVLE 973

Query: 789  -----------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                       +G          A  +A G+  A   ++ +  P LL +   + 
Sbjct: 974  MNIDLIHQKIEFGAPSTQWWSQLATAVAGGLAFATLLTL-VLTPCLLMLGREKK 1026



 Score = 44.7 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 76/242 (31%), Gaps = 13/242 (5%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ VR      +             +   R      D+VA  + +    +K  +     
Sbjct: 257 DIATVRRAFRDPESFARLDGKSAVVLDVKKRAGENIIDTVALVKTVMHEAQKREDWPNNL 316

Query: 650 TIQNTEIVGPKIS---RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            ++ T      +     +L    +  +++  I ++  + +R  +        ++      
Sbjct: 317 LVKYTWDESKDVQLMLNDLQNNILSAILLVVIVIIAILGVRTAFLVG----VSIPGSFLT 372

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L   ++FG+  N+  + +++  +G  V+  +VV +      +     +   +    +  
Sbjct: 373 GLLVLSVFGLTVNIVVLFSLIMAVGMLVDGAIVVTEFA---DRRMQEGMPRSEAYRDAAK 429

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                   ++     +  P+  W    G  +    + +   +  +   ++     +   +
Sbjct: 430 RMAWPITASTATTLAAFAPLLFWPDITGEFMKFLPLTLIATLAASLVMALLFVPVLGSLM 489

Query: 824 YD 825
             
Sbjct: 490 GR 491


>gi|307823784|ref|ZP_07654012.1| heavy metal efflux pump, CzcA family [Methylobacter tundripaludum
           SV96]
 gi|307735078|gb|EFO05927.1| heavy metal efflux pump, CzcA family [Methylobacter tundripaludum
           SV96]
          Length = 1053

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/682 (10%), Positives = 172/682 (25%), Gaps = 51/682 (7%)

Query: 5   PWLVIL-YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            ++V+L   ++   GL            LD  P       I                   
Sbjct: 13  RFMVLLGAIILALAGLWS-----FKNMPLDAIPDLSDVQVI---------VFTDYADQSP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +    +         + + + F D         +V  +L  V 
Sbjct: 59  QVVEDQVTYPLTTAMLAVPHAKVVRGYSFFGLSFVYVIFEDGTDIYWARSRVLEYLNYVK 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +L       L    T                     +            +       + 
Sbjct: 119 GRLPQGITPTLGPDATGVGWIYEY-ALVDKTGKHDLAQLRSIQDWYLRYPLQTVSGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                 + Q   E DP+ L+      + +       NN   G +F +            +
Sbjct: 178 ASMGGYVKQYQVEVDPNVLQAYQIPLSTVITAIKRSNNDVGGRLFEMGETEYMVRGLGYI 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +   ++                    + +  D  G     +        P        + 
Sbjct: 238 KSIADLK------------------TIPVGVDTNGTPIRLQDVAHIQIGPELRRGVTELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   +   +   +   TIE        L+ G       +           +     
Sbjct: 280 GEGEVAGGVVIMRFGENALATIEDVRKKLDELKKGLPEGVEIVTVYDRGSLIERAVDTLN 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
              +    +V  ++ + +L+ +  LV   ++ L +++   ++   G    + S+ GI L 
Sbjct: 340 SALSQELIIVCALVALFLLHLRSSLVIVITLPLGILMAFIVMKWQGMNANIMSLGGIALA 399

Query: 424 IGLAVDSNILVNERIREE----------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           IG  VD  +++ E   +              ++  + ++        S +F S +   ++
Sbjct: 400 IGDMVDGAVVMVENAHKHLAEAVEKKQAKLTSEERWQAIGNASREVGSGLFSSLLVITVS 459

Query: 474 TVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + +       G      A T   ++  +    I++V  +M + +R K +          
Sbjct: 460 FLPIITMEAQEGRLFSPLAYTKTYAMAAAAILTITLVPVLMGYFVRGKIIPEQKNPINRF 519

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGID----FKGGIQLGVLAN 586
              I   +    MR R   V ++ L    ++  L   G  +           +       
Sbjct: 520 LHFIHSPVLKLAMRWRTLTVILAALLMASTLYPLSRIGSEFMPPLYEGDLLYMPTTFPGI 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
                  V    + +       Q   G+              + +T V    +++  +  
Sbjct: 580 SITKAKEVLQQTDKILKTFPEVQQVFGKIGRAETATDAAPLMMVETTVQLKPQEQWPDPD 639

Query: 647 PLSTIQNTEIVGPKISRELIRK 668
                   E+        +   
Sbjct: 640 KTIRQLMDEMDKAIHFPGITNA 661



 Score = 41.6 bits (95), Expect = 0.54,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 10/219 (4%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V    +   L              G    +   +          + L+ +KK + E V
Sbjct: 260 QDVAHIQIGPELRRGVTELNGEGEVAGGVVIMRFGENALATIEDVRKKLDELKKGLPEGV 319

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            + T+ +   +  +    L       +II    + +++        +L  + TL L I  
Sbjct: 320 EIVTVYDRGSLIERAVDTLNSALSQELIIVCALVALFLL---HLRSSLVIVITLPLGILM 376

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR-------KNMKLYTTSISFRD 759
                   G+  N+ ++  +   IG  V+  VV+ +          +  +   TS     
Sbjct: 377 AFIVMKWQGMNANIMSLGGIALAIGDMVDGAVVMVENAHKHLAEAVEKKQAKLTSEERWQ 436

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            I  +  E       + +   +S LP+          F+
Sbjct: 437 AIGNASREVGSGLFSSLLVITVSFLPIITMEAQEGRLFS 475


>gi|296121837|ref|YP_003629615.1| heavy metal efflux pump, CzcA family [Planctomyces limnophilus DSM
           3776]
 gi|296014177|gb|ADG67416.1| heavy metal efflux pump, CzcA family [Planctomyces limnophilus DSM
           3776]
          Length = 1049

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/647 (11%), Positives = 169/647 (26%), Gaps = 47/647 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N   +++L  ++   G++ A      +  LD  P                    +L V
Sbjct: 10  MENRFIVMLLAIILFGAGVVSA-----SRLPLDAVPDLTNVQVQ------------ILTV 52

Query: 61  DE---DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   V  F+    +   S L +        R   + +T++F D        + V  
Sbjct: 53  SPALGPVEVEQFITFPVENAMSGLPRIQEIRSISRIGLSAVTVAFQDGTDIYWARNLVNE 112

Query: 118 FLQGVNSKLNVDP-KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            L      +        +    T           +        ++    +  Q   Q+  
Sbjct: 113 RLLQARQNIPPGMGDPQMGPIATGMSEIYQFEVRSKPGFNHSLMDLRTILDWQIAFQLRS 172

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
               I+       L     + DP +L     + +++       N +  G        +  
Sbjct: 173 IPGVIEVNTFGGELKTYEIQVDPHKLLNYGISLSRVFQALEENNANAGGGYIAHGSEQRL 232

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
              + LV    +I                    + +     G         +    P+  
Sbjct: 233 IRGEGLVTSLDDIR------------------RIVLEARSDGTAIRISDIANVQFAPMLR 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          +       +    +E        +                     
Sbjct: 275 QGAVTRDGNREAVTGMVMMIMGGNSRQVVEDVKEKIHAIEKTLPEGVYIDTFYDRTELVE 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +         +   LV+I+LF+++   + GL+   +I L+ +  L  +SL G +  L S
Sbjct: 335 KTIHTIAENIGVGVLLVVIMLFLLLGDVRAGLIVASAIPLSAMFALIAMSLAGVSANLMS 394

Query: 417 IAG-----IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
           +       IV G  + +++ +    R ++     +              + I  + I  +
Sbjct: 395 LGAVDFGVIVDGAVVMIENAVRTASRYQQTTGSKRVPKEVFVASAKEVGTPILFAGIIVI 454

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           I  + +       G   R  A T   ++  ++  A++++  M    +             
Sbjct: 455 IVFLPILSLEGVEGKMFRPMAFTFMSALTGALILAVTVMPVMASLFLARNISSKETFLVR 514

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
                    +     R      G  +LF    +  L           +G I +       
Sbjct: 515 WLKAAYEPMLHFSMARPVLMLSGAVLLFVASVLVSLGFGVEFVPKLDEGDIAIQATRLPS 574

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
           V L       ++++   + F   +   +   R +            +
Sbjct: 575 VSLEASIEMTKAMERTLLQFPQVESVISKTGRPEIANDPMGVHQTDV 621



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 91/248 (36%), Gaps = 9/248 (3%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +  + P    +  S L  +++ D   +         + +Q           V E  K  
Sbjct: 781  ELKISDPQGRQIPVSQLADIRLEDGPSEISRDSIRRRLLIQCNVRGRDLGGFVAEAQKIV 840

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
              +I              +  ++   +  V V ++   +   +++ F     L  +  L 
Sbjct: 841  DQQIKLPPGYALEWGGQFENLQQASARLAVAVPVALFLIFSLLYVTFGSVR-LTLLIYLN 899

Query: 702  LDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + I  T G FAL+  G+ F+++A    + L G +V + VV+ + +R    LY   +  R 
Sbjct: 900  VPIAATGGIFALWLRGMPFSISAGVGFIALFGIAVMNGVVLIEHIR---HLYLHGLDSRT 956

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIA 816
             +     + L     T++   +  +PMAV    G  V    A  +  G+V   + ++ + 
Sbjct: 957  AVVTGAMDRLRPVFMTAICGALGFVPMAVSGSAGAEVQRPLATVVIGGLVTCTALTLLVL 1016

Query: 817  APILLFIY 824
              I  +  
Sbjct: 1017 PAIYRWFE 1024



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 66/217 (30%), Gaps = 9/217 (4%)

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
           +V +            V E +      +     I         + + +        +   
Sbjct: 290 MVMMIMGGNSRQVVEDVKEKIHAIEKTLPEGVYIDTFYDRTELVEKTIHTIAENIGVGVL 349

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +++   +       L   + + L     L   +L G+  NL ++ AV    G  V+  
Sbjct: 350 LVVIMLFLLLGDVRAGLIVASAIPLSAMFALIAMSLAGVSANLMSLGAV--DFGVIVDGA 407

Query: 738 VVVYDR-MRKNMKLYTTSIS---FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS- 792
           VV+ +  +R   +   T+ S    +++   S  E     ++  +   I  LP+    G  
Sbjct: 408 VVMIENAVRTASRYQQTTGSKRVPKEVFVASAKEVGTPILFAGIIVIIVFLPILSLEGVE 467

Query: 793 --VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             +    A      +  A   ++ +   +        
Sbjct: 468 GKMFRPMAFTFMSALTGALILAVTVMPVMASLFLARN 504


>gi|270157843|ref|ZP_06186500.1| putative multidrug resistance protein [Legionella longbeachae
           D-4968]
 gi|269989868|gb|EEZ96122.1| putative multidrug resistance protein [Legionella longbeachae
           D-4968]
          Length = 1004

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/464 (11%), Positives = 137/464 (29%), Gaps = 25/464 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                   + D + GF+    +   +                + IT++   +        
Sbjct: 28  VTTTYTGADPDVIAGFITTPLENSIAQANGIDYMTSISSPSTSTITVNLRLNYDPLKALS 87

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            +T  +  V ++L  + ++ ++  +  + I  +      D++  +  + +  IIR    +
Sbjct: 88  DITTKVNAVLNQLPKNSQQPVITVSVGQTIDSMYIGFYSDELPIN--KITDYIIRVVQPK 145

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +                  L    DP +L     + A++       +          +  
Sbjct: 146 LQAVNGVQNAQILGNQTFALRAWLDPVKLAGYGISAAEIGAALANNDFISAVGRTDGQMF 205

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                               +   TA+ +         +                 +   
Sbjct: 206 --------------------IQNLTASTNLTDVNQFKKMVIKAQNGAIIHLEDVATVSLG 245

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                                     +    I+    +   ++          +      
Sbjct: 246 AQNYNSSVSFDGRTAVYVGILVAPSANLLTVIDDIKKIFPTIQEQLPQGLNGKIVYDASL 305

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S      +      +V  V+F+ +   +  L+   +I L++I    ++ +LG ++ 
Sbjct: 306 FVHSSIHEVIVSLLEAFLIVTAVIFLFLGSMRSVLIPIVAIPLSLIGAFWIMLILGYSIN 365

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           L ++  +VL IGL VD  I+V E ++    + Q+   +  +G     + I    I  +  
Sbjct: 366 LLTLLALVLAIGLVVDDAIIVVENVQRHIEEGQTRLKAALLGARELANPIIAITIVLIAV 425

Query: 474 TVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            + + F G   G     FA ++  ++ +S   A+++   M   +
Sbjct: 426 YLPIGFMGGLTGALFTEFAFSLAGAVTVSAVIALTLSPMMCSKL 469



 Score = 58.2 bits (138), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/192 (13%), Positives = 70/192 (36%), Gaps = 9/192 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               ++   +++++ + +    + +  +       E+I   +   +I    + +++    
Sbjct: 278 DDIKKIFPTIQEQLPQGLNGKIVYDASLFVHSSIHEVIVSLLEAFLIVTAVIFLFLG--- 334

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  I  + L +        + G   NL  + A++  IG  V+D ++V + +    
Sbjct: 335 SMRSVLIPIVAIPLSLIGAFWIMLILGYSINLLTLLALVLAIGLVVDDAIIVVENV---Q 391

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      +          E     +  ++      LP+   G   G++   FA  +A  +
Sbjct: 392 RHIEEGQTRLKAALLGARELANPIIAITIVLIAVYLPIGFMGGLTGALFTEFAFSLAGAV 451

Query: 806 VVAASSSIFIAA 817
            V+A  ++ ++ 
Sbjct: 452 TVSAVIALTLSP 463



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/257 (11%), Positives = 78/257 (30%), Gaps = 14/257 (5%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +   +   V LS V      +    ++                      A   +  +  +
Sbjct: 748 IKTSSGASVPLSTVAELQRQIVPESLNHFQQLNSATISAVAFPGVTMGHALETLANIANQ 807

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
            + +   +     +     + +  +          + I + + +   F+ +   L  + +
Sbjct: 808 TLPQGYYIDYGAQSRQFIQEGANLIFT-----FFFALIIIFLALSALFESFRDPLIVLIS 862

Query: 700 LILDI--TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
           + + I          +     N+ +   ++TLIG      +++         L       
Sbjct: 863 VPMSICGAMIFVSLGIGHATLNIYSEVGLVTLIGLISKHGILIVQFAND---LQAEGQKK 919

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
              I  +    L   + T+ A  + V+P+      G     +  + +A GI +    ++F
Sbjct: 920 LAAIKAAAAIRLRPILMTTAAMVLGVIPLIFATGAGAESRFNIGLVIAMGISIGTLFTLF 979

Query: 815 IAAPILLFIYDWRAKNA 831
           +   + L +    AK A
Sbjct: 980 VVPAMYLLLAADHAKRA 996


>gi|117620294|ref|YP_857467.1| cation efflux system protein CusA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561701|gb|ABK38649.1| cation efflux system protein CusA [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 1042

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/664 (11%), Positives = 173/664 (26%), Gaps = 44/664 (6%)

Query: 16  CIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSD 75
             GL         Q+ +D  P       I                     V   +     
Sbjct: 25  AWGLWSV-----KQTPVDALPDLSDVQVI---------IKTAYPGQAPQVVEDQVTYPLT 70

Query: 76  ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLL 135
                +              + + + F D+        +V  +L  V   L    +  L 
Sbjct: 71  TAMLAVPGATTVRGYSFFGDSFVYVLFDDNTDLYWARARVLEYLSQVAPNLPASARPQLG 130

Query: 136 VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPG 195
              T                     E +         ++   E   +      ++ Q   
Sbjct: 131 PDATGVGWVYQY-ALVDRTGKHDLSELTSLQNWFLKYELQTVEGVSEVATVGGMVRQYQV 189

Query: 196 EQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLN 255
             DP +LR      + +       N      +  +        +   ++   ++      
Sbjct: 190 RVDPDKLRAYGIPLSLIETAIKQGNQETGASVIEMAEAEYMVRSNGYLKSVEDLK----- 244

Query: 256 GATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSG 315
                         + +     GA        D +  P +      +     +   I   
Sbjct: 245 -------------QIPLGTTVRGAPLLLGDVADVVTGPQSRRGLAELNGEGEVVGGIIVM 291

Query: 316 KAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLI 375
           +   +   TI+      A L++        +           +     G       +V++
Sbjct: 292 RYGENAQHTIDGVKARLAQLKSSLPEGVQVVTVYDRSDLIQRAIDNLSGKLVEEFAVVVL 351

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
           V    + + +  LV   S+ + ++    ++ L G    + S+ GI + IG  VD  I++ 
Sbjct: 352 VCLAFLFHLRSSLVVVISLPIAILTAFIVMHLQGINANIMSLGGIAIAIGAMVDGAIVMI 411

Query: 436 ERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF---FFGGGAVRGF 488
           E + +   +    +++ +  +          IF S +   I+ + +F      G      
Sbjct: 412 ENVHKHMEREALTDKNRWRIITEASIEVGPAIFFSLLIITISFLPVFALEAQEGRMFHPL 471

Query: 489 AITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC-IAIQFMRARF 547
           A T   ++  +   AI++V  +M + IR K +                  +     R   
Sbjct: 472 AYTKTYAMAAAAGLAITLVPVIMGYFIRGKVLAEQANPLNRWLSQGYVPLLKAVLARPNT 531

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                +++       L +          +G I         + +   R  L+     D  
Sbjct: 532 TLAIAAVVTVAGFWPLKYLGSEFIPPLDEGDIMYMPTTAANISVGKAREILQQ---TDKL 588

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
            +     +N   +       +     V+     ++            E +  ++   +  
Sbjct: 589 IRTVPEVQNVFGKAGRAESATDPADLVMMETSIQLKPRDQWRPGMTPEKLKEELDSLIRF 648

Query: 668 KGIV 671
            G+ 
Sbjct: 649 PGLT 652



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/257 (15%), Positives = 81/257 (31%), Gaps = 15/257 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             L   +   + L+ V     S +   +  +N        V ++ +   S       E+ K
Sbjct: 780  PLVTPSGARIALADVARVYISDEAPMLRSENARLNGWVYVDIRGRDIGSFVAQAKAEVDK 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + +       T         +    L    +V + ++ I +L+Y+  R    F    +  
Sbjct: 840  QLVLPAGYALTWSGQFEYMERAKARL--AYVVPLTVAIIVLLLYLAFR---RFQEVLLIL 894

Query: 700  LILDITKTLGFFALFGIEFNLTAV--AAVLTLIGYSVNDKVVVYDRMRKNM-----KLYT 752
              L +    G + L+ ++FNL+       + L G +V   V++   +             
Sbjct: 895  TTLPLAVVGGIWTLWLLDFNLSVAVGVGFIALAGVAVETGVLMLVYLNHAWDDLVASGKP 954

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                    +       L   + T +     +LP+      G  V+   A PM  G+V A 
Sbjct: 955  DKAGLHRAVIHGAALRLRPKMMTVVTIIAGLLPIMWSHGTGSEVMQRIAAPMIGGMVSAL 1014

Query: 810  SSSIFIAAPILLFIYDW 826
              ++ +           
Sbjct: 1015 VLTLLVLPAAYYLWRSR 1031



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 50/121 (41%), Gaps = 1/121 (0%)

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+ +   F    +L  + +L + I        L GI  N+ ++  +   IG  V+  
Sbjct: 348 VVVLVCLAFLFHLRSSLVVVISLPIAILTAFIVMHLQGINANIMSLGGIAIAIGAMVDGA 407

Query: 738 VVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
           +V+ + + K+M +   T  +   +I ++  E      ++ +   IS LP+          
Sbjct: 408 IVMIENVHKHMEREALTDKNRWRIITEASIEVGPAIFFSLLIITISFLPVFALEAQEGRM 467

Query: 797 F 797
           F
Sbjct: 468 F 468


>gi|330825946|ref|YP_004389249.1| CzcA family heavy metal efflux pump [Alicycliphilus denitrificans
           K601]
 gi|329311318|gb|AEB85733.1| heavy metal efflux pump, CzcA family [Alicycliphilus denitrificans
           K601]
          Length = 1061

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/561 (10%), Positives = 145/561 (25%), Gaps = 66/561 (11%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L  +      + +      +  +D  P                 +++ ++++   
Sbjct: 13  RWLVLLAVLGMAALGVFS----YQRLPIDAVPDI---------------TNVQVQINTPA 53

Query: 65  F------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                      +    +   + L          R   +++T+ F D          V   
Sbjct: 54  PGYSPLESEQRVTFPIETAMAGLPHLEQTRSLSRYGLSQVTVVFKDGTDIYFARQLVNER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLS------QNNIDQVISHAIEQSMEIIRQRID 172
           +Q    KL       L    T      + +          D       +           
Sbjct: 114 IQEAKEKLPAGLSPALGPVATGLGEIYMWTVETKEGALKPDGTPYTPTDLREIQDWIIKP 173

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           Q+       +         +      P +L     + A +       N +          
Sbjct: 174 QLRNVPGVTEINTIGGYAKEYQVAPSPDKLVAYGLSMADLVQALERNNANVGAGYIE--- 230

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                G QYL+    +++GI              + + +I   +             +G 
Sbjct: 231 ---RRGEQYLIRAPGQVAGI--------------EDIANIVVSQAQGAPIRVRDIAEVGI 273

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
              +           +           +     +        +     P  +        
Sbjct: 274 GKELRTGAATENGREVVLGTVFMLMGENSRTVSQAVDKRLQEVNKTLPPGVIAQTVYDRT 333

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                + +  K      A LV+ +LF+ +   +  ++    I L ++ T   +     + 
Sbjct: 334 ILIDKAIATVKKNLTEGALLVVAILFLFLGNIRAAVITAAVIPLAMLFTFTGMVSNKVSA 393

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYST 462
            L S+  +  GI   +D  +++ E                   Q  F  +      A   
Sbjct: 394 NLMSLGALDFGII--IDGAVVIVENCVRRLAHAQAAAGRPLTRQERFHEVFAAAREARRP 451

Query: 463 IFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +    +  ++  + +F      G      A T+  +++ +M  +++ + A +  +I    
Sbjct: 452 LVYGQLIIMVVYLPIFALSGVEGKMFHPMAFTVVAALVGAMILSVTFIPAAVALLIGKHV 511

Query: 520 MKSIDINPLSRFFLIPDCIAI 540
            +  +   L+        +  
Sbjct: 512 GEKENRLMLAAKKGYAPMLDW 532



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/256 (14%), Positives = 91/256 (35%), Gaps = 7/256 (2%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             + + +       V    + S +I     Q         V +          + V E  +
Sbjct: 790  PIRLPSAGGSPAYVRLGEVASFEIAPGPNQISRENGKRRVVVTANVRGRDIGSFVAEAHE 849

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            +   ++   S          +  +   ++  + V I+ + + + ++  F      L   T
Sbjct: 850  QLQQKVEIPSGYWTAWGGTFEQLQSASQRLQIVVPIALLMVFMLLFAMFNNVKDGLLVFT 909

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             +   +T  +    L  I  +++A    + L G +V + +V+   +R    L    +   
Sbjct: 910  GVPFALTGGIVALWLRDIPLSISAGVGFIALSGVAVLNGLVMISFIR---SLREEGLGLD 966

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            + + +     L   + T++ A +  +PMA+    G  V    A  +  GI+ + + ++ +
Sbjct: 967  EAVREGALTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGIMSSTALTLLV 1026

Query: 816  AAPILLFIYDWRAKNA 831
               +  + + WR +  
Sbjct: 1027 LPVLYRWAHAWRGRTQ 1042



 Score = 38.5 bits (87), Expect = 4.2,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 73/255 (28%), Gaps = 19/255 (7%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++  + IG         E    V L          +R +     K  + V  +      
Sbjct: 266 RDIAEVGIGKELRTGAATENGREVVLGTVFMLMGENSRTVSQAVDKRLQEVNKTLPPGVI 325

Query: 656 IVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                    LI K I  V       + + + I          A+     + L +  T   
Sbjct: 326 AQTVYDRTILIDKAIATVKKNLTEGALLVVAILFLFLGNIRAAVITAAVIPLAMLFTFTG 385

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTTSISFRDL-----IDK 763
                +  NL ++ A+    G  ++  VV+ +    R                    +  
Sbjct: 386 MVSNKVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQAAAGRPLTRQERFHEVFA 443

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPI 819
           +  E     VY  +   +  LP+    G    +    A  +   +V A   S+ FI A +
Sbjct: 444 AAREARRPLVYGQLIIMVVYLPIFALSGVEGKMFHPMAFTVVAALVGAMILSVTFIPAAV 503

Query: 820 LLFIYDW-RAKNARI 833
            L I      K  R+
Sbjct: 504 ALLIGKHVGEKENRL 518


>gi|312143978|ref|YP_003995424.1| protein-export membrane protein SecD [Halanaerobium sp.
           'sapolanicus']
 gi|311904629|gb|ADQ15070.1| protein-export membrane protein SecD [Halanaerobium sp.
           'sapolanicus']
          Length = 402

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 119/383 (31%), Positives = 209/383 (54%), Gaps = 28/383 (7%)

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                IS+        ++    +   + +I +R++Q+G+SE  IQR GS RI+++LP   
Sbjct: 37  QGGAHISLQAQPTEDREIDDTVMAGIVGVIERRVNQLGLSEPLIQREGSDRIIVELPAVD 96

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           +P++  + +G TA ++F                                V ++G  +  A
Sbjct: 97  NPNQAIETIGRTAMLTFRNED--------------------------GDVLMTGEAVRDA 130

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
            A+   +  + VV  +    G+ RF  +TR+ +G+ + + LD   LT P +       + 
Sbjct: 131 RAD-HDQYGRAVVSFTLTSEGSDRFANITREYMGRRIGIYLDDEQLTNPTVQAV-IEERG 188

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           QI+G  +++ A   A ++R G+LP+ + ++E R VG  LGS +I +   A + GL+L+ +
Sbjct: 189 QITGYDSVQAAEEHAILIREGALPVPVEVIETRTVGPTLGSIAIQRSITAGLIGLLLVAM 248

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           +MI  Y   G++A   + +  ++ +  L+ L A LTLP IAG++L IG+AVD+NI++ ER
Sbjct: 249 YMIYYYRFPGVLAAGILAIYGLILMGTLAGLQAVLTLPGIAGLILSIGMAVDANIIIFER 308

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
           I++E +  +++  ++D GF RAY TI D+N+T +I  ++L +F  G VRGFAIT+G+ I+
Sbjct: 309 IKDEMKSGKTLRAAVDSGFKRAYITILDANVTTIITALILAYFTSGTVRGFAITLGIGIV 368

Query: 498 ISMFTAISIVRAMMIFIIRYKKM 520
           +SMFTA  + R ++      K M
Sbjct: 369 VSMFTAFFVTRNVIDIFSGSKLM 391



 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 95/264 (35%), Gaps = 4/264 (1%)

Query: 568 GLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
              YG            ++R  +++            D         +  +       G 
Sbjct: 134 HDQYGRAVVSFTLTSEGSDRFANITREYMGRRIGIYLDDEQLTNPTVQAVIEERGQITGY 193

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
              Q      +  +   +     +  T  VGP +    I++ I   +I  + + +Y+   
Sbjct: 194 DSVQAAEEHAILIREGALPVPVEVIETRTVGPTLGSIAIQRSITAGLIGLLLVAMYMIYY 253

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           +++   L A   L +     +G  A       L  +A ++  IG +V+  +++++R++  
Sbjct: 254 YRFPGVLAAGI-LAIYGLILMGTLAGLQAVLTLPGIAGLILSIGMAVDANIIIFERIKDE 312

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
           MK   +  + R  +D          +  ++   I+ L +A +    +  FAI +  GIVV
Sbjct: 313 MK---SGKTLRAAVDSGFKRAYITILDANVTTIITALILAYFTSGTVRGFAITLGIGIVV 369

Query: 808 AASSSIFIAAPILLFIYDWRAKNA 831
           +  ++ F+   ++      +   A
Sbjct: 370 SMFTAFFVTRNVIDIFSGSKLMQA 393



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 4/104 (3%)

Query: 44  ISLGLDLRGGSHLVLEVDED---DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQ-NKIT 99
           I+LGLDL+GG+H+ L+       +  +  +      +   + + G+    +++   ++I 
Sbjct: 30  INLGLDLQGGAHISLQAQPTEDREIDDTVMAGIVGVIERRVNQLGLSEPLIQREGSDRII 89

Query: 100 LSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEI 143
           +            + +           + D           +  
Sbjct: 90  VELPAVDNPNQAIETIGRTAMLTFRNEDGDVLMTGEAVRDARAD 133


>gi|294629842|ref|ZP_06708402.1| conserved hypothetical protein [Streptomyces sp. e14]
 gi|292833175|gb|EFF91524.1| conserved hypothetical protein [Streptomyces sp. e14]
          Length = 749

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/523 (13%), Positives = 162/523 (30%), Gaps = 69/523 (13%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL---PSIAGIVLGI 424
           I   +  +VL +         +   +  + V + ++ ++ L + L L    S    ++G+
Sbjct: 194 IGIAIAAVVLVITFGSLLAAGLPLLTAIIGVGIGVSTVTALASALDLGTTTSTLASMIGL 253

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            + +D  + +  R R E  + ++   +       A S +  + +T +IA V L       
Sbjct: 254 AVGIDYALFIVSRYRAELAEGRTREDAAGRAVGTAGSAVVFAGLTVVIALVGLSVVNIPM 313

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-------KSIDINPLSRFFLIPDC 537
           +    +    +++I++  A++++ A++ +  R  K                         
Sbjct: 314 LTKMGVAAAGTVVIAVLIALTMIPALLGYAGRRVKPAGEKSKLLGGGRAAKEPARPNMGT 373

Query: 538 IAIQFMRARFWGVGI------------------------SILFSICSICLLFTHGLNYGI 573
               F+  R   V +                        S   S             +G 
Sbjct: 374 RWASFVVRRPVAVLLLGVVGLGAAAVPAASLELGLPDDGSQPVSTTQRRAYDLLSEGFGP 433

Query: 574 DFKGGIQLGVLANR-------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            F G + + V A           ++S     L+ +        N  G+   +  +     
Sbjct: 434 GFNGPLMVVVDAKDSARPKTAFTEVSDEIKGLKDVVTVTPPQPNKAGDTATITVVPNSKP 493

Query: 627 DSVAQTRVLEMVKKK----ITEIVPLSTIQNTEIVGPKISRELIRKGI--VGVIISAIAM 680
            S     ++  ++        +      +  +  +   +S++L    +  + +++    +
Sbjct: 494 SSTTTEDLVHAIRGAGDGIKAKTDAEILVTGSTAMNIDVSQKLNDALVPYLALVVGLAFL 553

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFA----------LFGIE-----FNLTAVAA 725
           L+ +  R      L A    +L +   LG             L G+E      ++  +  
Sbjct: 554 LLIVVFR-SILVPLKAALGFLLSVLAALGAVVAVFQWGWLSGLMGVEQTGPVMSMMPIFM 612

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           V  + G +++ +V +  RMR+    Y         +         R V  +    I+V  
Sbjct: 613 VGVVFGLAMDYEVFLVTRMRE---AYVHGEKPTQAVVTGFRH-GARVVTAAAVIMIAVFS 668

Query: 786 MAVWGGSV-IGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDW 826
             +      I      +A  +   A    + I   +L  +   
Sbjct: 669 GFIGSSESMIKMIGFGLAIAVFFDAFVVRMAIVPAVLALLGRR 711


>gi|172036919|ref|YP_001803420.1| AcrB/AcrD/AcrF family protein [Cyanothece sp. ATCC 51142]
 gi|171698373|gb|ACB51354.1| AcrB/AcrD/AcrF family protein [Cyanothece sp. ATCC 51142]
          Length = 1060

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/513 (12%), Positives = 139/513 (27%), Gaps = 36/513 (7%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           +L++++   G+L      L        P                             V  
Sbjct: 16  VLFALLAIFGILSLFNLPLELQPGGDRPEITITTP--------------YPGASPAEVED 61

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    +E    ++       +     + I++ F  +   +     V   LQ V + L  
Sbjct: 62  LVTRPIEERLEEVQGIQEISSTSSNGTSNISVEFTWNTDIDRSLIDVLNKLQQVEA-LPT 120

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQV-ISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
           +  ++ +   +     ++       +            +    + ++   +   Q L S 
Sbjct: 121 EADESNVEVVSGSSSPMMWVILIPKEGYTPDEYHYRDLVDDVVVPRLRQVQGVGQFLISG 180

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
               ++    DP  L     T   +       N   +G    +            + D  
Sbjct: 181 GREREVEVIVDPKALADRNLTIGDVVSTLRNNNRDIRGGPLVLGRREYRVRTLSRINDVK 240

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           ++ G  L    +            +                     +  V       +  
Sbjct: 241 QLEGFVLRRDESGTVYLGDVAQARMGRAIQDRALVRNNEPAVGIGIMRQVGGNVPEISAG 300

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           I                   A                  +          S S  +    
Sbjct: 301 IR-----------------AALTDLEQRFDREGEGITFDITYDENDYINASISFVQSNLI 343

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
           + A L  ++L + +   +   V   +I   +I    +  LLG TL + S+AG+   +G+ 
Sbjct: 344 MGAILAALILLLFLGSLRTVGVIAIAIPTTLITVFIVFFLLGRTLNVISLAGLAFAVGMV 403

Query: 428 VDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGA 484
           VD+ I+V E I    ++ ++   +   G       +  S +T +     +       G  
Sbjct: 404 VDNAIVVLENIFTHMQQGKTPMKAAIDGTQEVGGAMLASTLTTVAVFAPIILVTGEAGQL 463

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
                I +  S+L S+  A+++V  +    +  
Sbjct: 464 FFDIGIALSSSVLFSLLAALTLVPMLAGLFLNR 496



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 95/255 (37%), Gaps = 12/255 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + V LS V   +E+     I+  + +      V +  +        +    + + +   +
Sbjct: 792  QLVQLSDVAEVMETTGPDAINHVDLERSITLTVSVGREAPLGALVGQTETEILEPLRANL 851

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            P             ++  L + G   V+   I  L+ + +   + + L  + T+ + +T 
Sbjct: 852  PPGVRLELGGSADVLAETLFQLGATFVLSLVITYLLLVALYRSFVYPLLIMATVPMGMTG 911

Query: 707  TLGFFALFGI------EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L    L           ++      + L G  VN+ +++ DR    ++L    + +   
Sbjct: 912  ALLSLVLANAIPGVVVPLDMITGLGFVILTGVVVNNAILLVDRA---LQLQAEGVEYDAS 968

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            +  ++ + L     ++  + + +LP+A+    G  +     I +  G++++   +  +  
Sbjct: 969  LYYAVGDRLRPIFMSAGTSVLGMLPLAIIPGKGAELYQGLGIALTGGLILSTFLTPTVIP 1028

Query: 818  PILLFIYDWRAKNAR 832
             ++  + D+  +  +
Sbjct: 1029 ALMGLLKDFEGRKNK 1043



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 4/107 (3%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              + AI  +   +      F L G   N+ ++A +   +G  V++ +VV + +      
Sbjct: 362 TVGVIAI-AIPTTLITVFIVFFLLGRTLNVISLAGLAFAVGMVVDNAIVVLENI---FTH 417

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
                +          E  G  + +++       P+ +  G     F
Sbjct: 418 MQQGKTPMKAAIDGTQEVGGAMLASTLTTVAVFAPIILVTGEAGQLF 464


>gi|162456396|ref|YP_001618763.1| cation efflux system protein [Sorangium cellulosum 'So ce 56']
 gi|161166978|emb|CAN98283.1| cation efflux system protein [Sorangium cellulosum 'So ce 56']
          Length = 1062

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/540 (13%), Positives = 158/540 (29%), Gaps = 53/540 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN  +++   +++   G    L     +  +D FP                   + L  
Sbjct: 10  LRNRLFVIAAAALVLVYGTYSLL-----KLPIDVFPDLNRPT-------------VTLMT 51

Query: 61  DEDDFVNGFLQMYSDELRSFL----KKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
           +        ++         +            +     + + + F  S         V 
Sbjct: 52  EAPGLAPEEVETLVTVPLERVMNGAPGVERVRSTSGVGLSVVYVEFDWSTDIYRDRQLVA 111

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             L  V  +L       +    +     +++              Q+  +IR    ++  
Sbjct: 112 ERLATVTEQLPEGVTPQMGPVASIMGEILLIGVQGEGVSPMTLRTQADWVIR---PRLLT 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                Q +     + Q+    DP++L     +  ++S      N +  G     R L   
Sbjct: 169 IPGVAQVIPIGGEVRQIQVTVDPAKLAAAAVSLDEISRALTGANANATGGYVDRRGLEFL 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                    + +I+   +                       G                  
Sbjct: 229 VRTLGRARTEADIAATVIA-------------------MRNGTPVTLAQVATVQEAARIK 269

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
             DG +   P +  ++       +   T      +A + R+    + +N    R      
Sbjct: 270 RGDGSIDGKPAVILSVQKQPGADTVALTGSIDRAVAELQRSMPAGVTINPRLFRQATFIQ 329

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +           A LV IVLF+ +L  +   +   +I L+ I++  +    G ++   +
Sbjct: 330 SAVHNVVEALRDGAILVTIVLFLFLLNFRTTAITLTAIPLSFIVSALVFRAFGLSVNTMT 389

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNI-- 468
           + G+ + IG  VD  I+  E +    R+N      +     +    S   S+I  + I  
Sbjct: 390 LGGLAVAIGELVDDAIVDVENVFRRLRENRALASPRPAMDVIRDASSEVRSSIVFATIVV 449

Query: 469 -TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
               +    +    G       I   +SIL S+  ++++  A+  +++   K  S +   
Sbjct: 450 VLVFVPLFAMSGIEGRLFAPLGIAYIVSILASLVVSLTVTPALCSYLLPSMKRMSHEDGW 509



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 90/249 (36%), Gaps = 10/249 (4%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + +    PV L+ V +  E+ +I              L   +    D+VA T  ++   
Sbjct: 245 VIAMRNGTPVTLAQVATVQEAARIKRGDGSIDGKPAVILSVQKQPGADTVALTGSIDRAV 304

Query: 640 KKITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAI 697
            ++   +P   TI           +  +   +  +   AI + I +      +      +
Sbjct: 305 AELQRSMPAGVTINPRLFRQATFIQSAVHNVVEALRDGAILVTIVLFLFLLNFRTTAITL 364

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTT 753
           T + L    +   F  FG+  N   +  +   IG  V+D +V    V+ R+R+N  L + 
Sbjct: 365 TAIPLSFIVSALVFRAFGLSVNTMTLGGLAVAIGELVDDAIVDVENVFRRLRENRALASP 424

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGIVVAAS 810
                D+I  + +E     V+ ++   +  +P+    G     FA   I     I+ +  
Sbjct: 425 R-PAMDVIRDASSEVRSSIVFATIVVVLVFVPLFAMSGIEGRLFAPLGIAYIVSILASLV 483

Query: 811 SSIFIAAPI 819
            S+ +   +
Sbjct: 484 VSLTVTPAL 492



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 89/245 (36%), Gaps = 17/245 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S+L ++       Q    +    + +         +  V  + +       P        
Sbjct: 788  SDLANVTESMGPNQISRDDTQRRIVVSANVAGRDLEQVVSNIQRAVDAIPKPPGYYATYG 847

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                         G++ +  S   ML+ ++ +F+ W  AL  +  + L +  ++    L 
Sbjct: 848  GQFESQRSASRLIGLLSI-ASLAGMLVVLYSQFRSWTVALQILLNIPLALVGSVLAVVLT 906

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDR----MRKNMKLYTTSISFRDL-IDKSINETL 769
            G   ++  +   +TL G +  + +++       M++         SF +  I +   E L
Sbjct: 907  GGVLSVATLVGFITLCGIASRNGIMMISHYIHLMKEE------GESFGEAMIVRGSLERL 960

Query: 770  GRSVYTSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
               + T++ A ++++P+A+     G  ++   A+ +  G++ +    I +   + L    
Sbjct: 961  VPVLMTALTAALALVPIALSKGQPGKEILQPVAVVILGGLLSSTLLDIVVTPAVFLKFGR 1020

Query: 826  WRAKN 830
              A+ 
Sbjct: 1021 SSAER 1025


>gi|304322351|ref|YP_003855994.1| heavy metal efflux pump, CzcA family protein [Parvularcula
           bermudensis HTCC2503]
 gi|303301253|gb|ADM10852.1| heavy metal efflux pump, CzcA family protein [Parvularcula
           bermudensis HTCC2503]
          Length = 1048

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/520 (12%), Positives = 136/520 (26%), Gaps = 42/520 (8%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--D 63
              +    +   G+            +D FP   P               +  E +    
Sbjct: 14  LAGLAAVAVTIAGIWA-----FRSLPVDAFPDVTPSL-----------VQVFTETEGLAP 57

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V  ++    +   S L K            + + + F D          V   L    
Sbjct: 58  EEVERYVTYPLETSMSGLPKLEEIRSVSNFGLSVLNIYFEDGTDVYFARQVVGERLAEAR 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             +     +  +   +     I+      +    + +E           Q+       + 
Sbjct: 118 EAIPEGFGEPKMGPISTGLGIILYYNLVDETGERNLVEMREIQDWLIKYQLQSVPGITEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
           L    +  Q   + +P  L +   T   +       N +       +   +       L 
Sbjct: 178 LSLGGLEKQYQVKVNPEALLRYDLTVRDVITALEAGNRTTGAQYLEIDAEQYVVRGIGLA 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           ED  ++                      I     G                         
Sbjct: 238 EDIADLGAA-------------------ILKTVDGTPVRVADVAQIEVGGGVRQGLATAD 278

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   I       + +  IE A      +          +           + S   
Sbjct: 279 GQGEVVAGIVLKLYGTNTSDVIERASERFDEINETLPEGVRAVAYYDQATLVNAASSTVT 338

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                 A LV +++F  +   +  LV   SI  +V      + L G +  L S+ G+ + 
Sbjct: 339 TALWQGALLVAVLIFAFLGGWRPSLVVVLSIPFSVGFAFLGMKLFGVSANLMSLGGVAIA 398

Query: 424 IGLAVDSNILVNERIREE--NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           IG+ VD  I++ E +      R +     ++        + +  +    ++  + LF   
Sbjct: 399 IGMMVDGAIVIAENVDRMLRERPDADRRTAVAEATIEVIAPLLAAVAVVIVVFLPLFALQ 458

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
              G   R  A +  L++  S+  A  I  A+  +++R  
Sbjct: 459 GVEGKTFRPLAASAALAMFGSLIYAGLIAPAIAGWVMRSG 498



 Score = 64.3 bits (154), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 76/239 (31%), Gaps = 15/239 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +  ++      Q    E    + +Q         + V E      T++      +   
Sbjct: 800  EAVADVRSVVGPRQITREEGQRFITVQANVRGRDIGSFVEEAQGLAATQLDLPPGYRVVW 859

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL-- 713
                ++ ++  ++  V + I+   +L+ + + F    +   I   I  +    G  AL  
Sbjct: 860  GGQFELQQQANKRFAVVIPITLGIVLLILLMTFGRLKSALLILLNI-PLALVGGALALWI 918

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTTSISFRDLIDKSINETLG 770
             G+  ++ A    + L G ++ + +V+    DR                L          
Sbjct: 919  VGLPVSVPATVGFIALFGIALGNGMVLVSYLDRF------AREGQDLDVLAVDGAVLRAR 972

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              + T++   + + P+      G  V    A  +  G+V +   ++ +   +  +    
Sbjct: 973  PVLMTALTTALGLGPLLFASGVGAEVQRPLATVVVGGLVTSTVLTLLVLPALHRWFAPR 1031



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/256 (14%), Positives = 81/256 (31%), Gaps = 7/256 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V         V +  +       ++  +  GE    + L+    ++            +
Sbjct: 250 TVDGTPVRVADVAQIEVGGGVRQGLATADGQGEVVAGIVLKLYGTNTSDVIERASERFDE 309

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTL 700
           I E +P             +           +   A+ + + I      W  +L  + ++
Sbjct: 310 INETLPEGVRAVAYYDQATLVNAASSTVTTALWQGALLVAVLIFAFLGGWRPSLVVVLSI 369

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
              +        LFG+  NL ++  V   IG  V+  +V+ + +   M         R  
Sbjct: 370 PFSVGFAFLGMKLFGVSANLMSLGGVAIAIGMMVDGAIVIAENV-DRMLRERPDADRRTA 428

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI----FIA 816
           + ++  E +   +       +  LP+    G    +F  P+A    +A   S+     IA
Sbjct: 429 VAEATIEVIAPLLAAVAVVIVVFLPLFALQGVEGKTFR-PLAASAALAMFGSLIYAGLIA 487

Query: 817 APILLFIYDWRAKNAR 832
             I  ++     +N +
Sbjct: 488 PAIAGWVMRSGGENTK 503


>gi|113972110|ref|YP_735903.1| CzcA family heavy metal efflux protein [Shewanella sp. MR-4]
 gi|113886794|gb|ABI40846.1| heavy metal efflux pump, CzcA family [Shewanella sp. MR-4]
          Length = 1045

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/598 (11%), Positives = 165/598 (27%), Gaps = 45/598 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R    ++I+  MI   G+       L ++ LD  P       I                 
Sbjct: 11  RQRLMVLIIAMMITVWGI-----QELRKTPLDALPDLSDVQVI---------IKTPYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APKLVEEQVTYPLSTAMLAVPGAKTVRGFSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++S+L    + +L    +                     +           ++       
Sbjct: 117 ISSRLPQGVQPSLGPDASGVGWVFEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      +        +P ++       A +       N+   G +  +         + 
Sbjct: 176 EVATVGGMEQTYQIVLEPDKMAIYKLDIAAVKQAIDKANSEAGGSVVEMAEAEYMVRAKG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +   I L   + +      K V  +       R   E+  +             
Sbjct: 236 YRQTLEDFREIPLGITSPSGTGLLLKDVATVRKGPASRRGIAELDGE------------- 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +   TI+        L+ G       I           S   
Sbjct: 283 ----GEVVGGIVVMRYGENALATIDAVKAKLEELKTGLPDGVEIIPTYDRSQLIQKSVDN 338

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI 
Sbjct: 339 LFSKVVEEMLVVGLVCLLFLLHARSTLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIA 398

Query: 422 LGIGLAVDSNILVNERIREENRKN---QSVFCSLDMGFS-------RAYSTIFDSNITAL 471
           + IG  VD  I++ E + +             S+   +             +F S I   
Sbjct: 399 IAIGAVVDGAIVMIENLHKHLEHFKAEHDREPSVKEHWRIVTEASIEVGPALFFSLIIIT 458

Query: 472 IATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ V +F      G      A T   ++  + F +I++V  +M + IR K          
Sbjct: 459 LSFVPVFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSERSNPIS 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                +        ++     + ++++    +   +   G  +    + G  L +   
Sbjct: 519 RVLIALYQPALKLVLKFPKVTIVLALVALASAWYPMTRMGSEFMPALEEGDLLYMPTA 576



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/233 (14%), Positives = 79/233 (33%), Gaps = 13/233 (5%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-- 667
                E   L+   +   +  +    +   K  + E + +    +    G     + +   
Sbjct: 812  MLKSENGRLISWVFIDIEGTSIGEYIAAAKTALDEELVVPARYSYSFAGQYEYMQRVDAK 871

Query: 668  -KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             K ++ + +  I +L+ +        ++  + +L   +  +     L     ++     +
Sbjct: 872  LKQVIPMALGVIFILLMMTFGSTMQASII-MLSLPFALVGSTWLLYLLDYNISVAVAVGM 930

Query: 727  LTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            + L G +    VV+        + R+    Y T    ++ + +     +     T    F
Sbjct: 931  IALAGVAAEFGVVMLVYLNNAIKHRQEKNTYHTVEDLKEALIEGAVMRIRPKAMTVATIF 990

Query: 781  ISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              +LP+      G  V+   A PM  G+V A   S+F+   + L IY  +   
Sbjct: 991  FGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLIYARQINK 1043



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + + V +    +   +  K    L  K +  
Sbjct: 287 GGIVVMRYGENALATIDAVKAKLEELKTGLPDGVEIIPTYDRSQLIQKSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNM----KLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K++      +    S ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEHFKAEHDREPSVKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+          F   A    F +  AA  SI +   ++ +    +  + R
Sbjct: 463 PVFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSER 513


>gi|329846699|ref|ZP_08261972.1| cation efflux system protein cusA [Asticcacaulis biprosthecum C19]
 gi|328844206|gb|EGF93774.1| cation efflux system protein cusA [Asticcacaulis biprosthecum C19]
          Length = 1049

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/575 (11%), Positives = 150/575 (26%), Gaps = 47/575 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + VIL ++   I  + A+      + +D  P       I                   
Sbjct: 12  NRFFVILATIAVIIAGVFAM----RSTAVDALPDLSDVQVI---------IRTPYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F D         +V  +L  V 
Sbjct: 59  QIVENQVTYPLTTTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTDLYWARSRVLEYLNQVQ 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +L    K  L    T                     +           ++       + 
Sbjct: 119 GRLPASAKPALGPDATGVGWVFEY-ALIDKTGRHDLSQLRSLQDWFLRYELKSLPGVAEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q     DP +L     T  ++       N    G +  +            +
Sbjct: 178 ASIGGMVKQYQVVLDPVKLASYGVTHQEVVSAIQGANQESGGSVLELAEAEYMVRANGYL 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +   +                             G              P        + 
Sbjct: 238 KSLGD-------------------FRAVPIKTSGGLAITLGQVATVQVGPEMRRGIAELN 278

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   +   ++  +   TI       + LR    P    +           + S   
Sbjct: 279 GQGEVAGGVVILRSGDNARETIAAVKQKLSELRKSLPPGVEVVTTYDRSQLIDHAISNLS 338

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   +V +V  + + + +  LVA  ++ + ++L   +++L G    + S+ GI + 
Sbjct: 339 EKLIEEFVVVALVCALFLWHVRSALVAIVTLPVGILLAFIVMNLQGVNANIMSLGGIAIA 398

Query: 424 IGLAVDSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNITALI 472
           IG  VD  +++ E   ++                  +  L          +F S +    
Sbjct: 399 IGAMVDGAVVMIENAHKKIEHWEHDHPEDRLEGSERWSVLTEAAVEVGPALFFSLLIITF 458

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + + +F      G      A T   S+  +   +++++  +M ++IR +  K        
Sbjct: 459 SFIPVFTLQGQEGRLFSPLAFTKTYSMAGAAILSVTLIPVLMGYLIRGRIPKEEVNPVNR 518

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
               +   +    M+     + I+ +    ++  L
Sbjct: 519 FLTSVYQPVLDAAMKHPKATLAIAAVAFATTLWPL 553



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/264 (16%), Positives = 93/264 (35%), Gaps = 11/264 (4%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            +G   L VL      +++       +  G    +  +G  +  + +  +  D  +  + L
Sbjct: 780  EGLRNLPVLTPSGQQITLGTVARVEITEGPPMLKTENGRPSTWIYVDVRGRDLASVVKDL 839

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            +    K   + P  ++  +             K +V   ++ I +L+Y+  R    F   
Sbjct: 840  QAAVAKNVPLAPGVSVAYSGQFEYLERAVARLKIVVPATLAIIFLLLYVTFR---RFDEA 896

Query: 696  AITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            A+  L L    T G + L   G   ++      + L G S    V++   ++  +K    
Sbjct: 897  ALIMLTLPFALTGGIWTLYVLGFHQSVATGVGFIALAGVSAEFGVIMLIYLKDALKARGP 956

Query: 754  SISFRD---LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
            + +  +    + +     +     T       +LP+      G  V+   A PM  G++ 
Sbjct: 957  NPTMAEIEAALREGALLRVRPKAMTVAVILAGLLPILFGHGAGSEVMSRIAAPMIGGMLT 1016

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            A   S+ +     L ++  RA  +
Sbjct: 1017 APLLSMLVVPAGYLLLHRRRAIRS 1040



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 79/216 (36%), Gaps = 14/216 (6%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A  + L  ++K +   V + T  +   +       L  K I   ++ A+   +++W   
Sbjct: 301 AAVKQKLSELRKSLPPGVEVVTTYDRSQLIDHAISNLSEKLIEEFVVVALVCALFLW--- 357

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
               AL AI TL + I        L G+  N+ ++  +   IG  V+  VV+ +   K +
Sbjct: 358 HVRSALVAIVTLPVGILLAFIVMNLQGVNANIMSLGGIAIAIGAMVDGAVVMIENAHKKI 417

Query: 749 KLYTTSISFR--------DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF--- 797
           + +                ++ ++  E      ++ +    S +P+    G     F   
Sbjct: 418 EHWEHDHPEDRLEGSERWSVLTEAAVEVGPALFFSLLIITFSFIPVFTLQGQEGRLFSPL 477

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           A    + +  AA  S+ +   ++ ++   R     +
Sbjct: 478 AFTKTYSMAGAAILSVTLIPVLMGYLIRGRIPKEEV 513


>gi|294138976|ref|YP_003554954.1| heavy metal efflux pump, CzcA family [Shewanella violacea DSS12]
 gi|293325445|dbj|BAJ00176.1| heavy metal efflux pump, CzcA family [Shewanella violacea DSS12]
          Length = 1043

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/590 (11%), Positives = 161/590 (27%), Gaps = 40/590 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L  +I  I + +     L  + LD  P       I                     V   
Sbjct: 14  LMVLIVTIMITVWGVQELRNTPLDALPDLSDVQVI---------IKTPFPGQAPKLVEEQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  V S+L   
Sbjct: 65  VTYPLSTAMLAVPGAKTVRGYSFFGDSYVYVIFEDGTDIYWARSRVLEYLNQVGSRLPQG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            + +L    +                     +           ++       +      +
Sbjct: 125 VQPSLGPDASGVGWIFEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVSEVATVGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
            +      +P +L       A +       N+   G +  +         +   +   + 
Sbjct: 184 ELTYQIVIEPDKLAIYKLDIAAIKDAISKSNSEAGGSVIEMAEAEYMVRAKGYRQTLDDF 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I L   + +  P   K V  +       R   E+  +                   + 
Sbjct: 244 REIPLGVTSPSGTPLLLKDVATVRKGPASRRGIAELDGE-----------------GEVV 286

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   +   +   TI+        L++G       I           S           
Sbjct: 287 GGIIVMRYGENALATIKAVKEKLEQLKSGLPEGVEIIPTYDRSQLIESSVENLFYKVLEE 346

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V +V  + +++ +  LVA  ++ L +++   +++ +G    + S+ GI + IG  VD
Sbjct: 347 MFVVGLVCMLFLMHARSTLVAVITLPLAILIAFIVMNKMGVNANIMSLGGIAIAIGAVVD 406

Query: 430 SNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF- 478
             I++ E + +                  +  +          +F S +   ++ + +F 
Sbjct: 407 GAIVMIENMHKHLEHFEQENKRRPDMNEHWKLVAEASVEVGPALFFSLLIITLSFMPVFA 466

Query: 479 --FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  +   +I++V  +M F IR K  K            +  
Sbjct: 467 LEAQEGRLFSPLAYTKTFAMAAAAVLSITLVPVLMGFFIRGKIPKETSNPISRCLIAMYK 526

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 ++     + ++ +  + +   +   G  +  +   G  L +   
Sbjct: 527 PALTLVLKFPKMTLVVAFIALMSAWYPMSQLGSEFMPELDEGDLLYMPTA 576



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 76/235 (32%), Gaps = 13/235 (5%)

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                  E   L+   +   +  +    +   K  +   + +    + +  G     + + 
Sbjct: 810  PPMLKSENGRLISWVFVDIEGTSIGEYISQAKSALENELVVPPRYSYDFAGQYEYMQRVD 869

Query: 668  ---KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
               K ++ + +  I +L+ +        A   + +L   +  +           ++    
Sbjct: 870  EKLKQVIPMALGVIFILLMMTF-GSTVQACMIMFSLPFALVGSTWLLYALDFNMSVAVAV 928

Query: 725  AVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
             ++ L G +    VV+        + RK    Y      ++ + +     +     T   
Sbjct: 929  GMIALAGVAAEFGVVMLVYLNNAIKYRKEKGKYEAVSDLKEALIEGAVMRIRPKAMTVAT 988

Query: 779  AFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             F  +LP+      G  V+   A PM  G+V A   S+F+   + L +Y  +   
Sbjct: 989  IFFGLLPIMWGTGAGNDVMQKIAAPMVGGMVTAPLLSLFVLPALYLLVYSRKLNK 1043



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/229 (16%), Positives = 76/229 (33%), Gaps = 15/229 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + E V +    +   +       L  K +  
Sbjct: 287 GGIIVMRYGENALATIKAVKEKLEQLKSGLPEGVEIIPTYDRSQLIESSVENLFYKVLEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
             ++  + ML  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MFVVGLVCMLFLMHAR----STLVAVITLPLAILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMR---KNMKLYTTSISFR----DLIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + M    ++ +              L+ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENMHKHLEHFEQENKRRPDMNEHWKLVAEASVEVGPALFFSLLIITLSFM 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           P+          F   A    F +  AA  SI +   ++ F    +   
Sbjct: 463 PVFALEAQEGRLFSPLAYTKTFAMAAAAVLSITLVPVLMGFFIRGKIPK 511


>gi|152981273|ref|YP_001352621.1| CzcA family heavy metal efflux protein [Janthinobacterium sp.
           Marseille]
 gi|151281350|gb|ABR89760.1| heavy metal efflux pump, CzcA family [Janthinobacterium sp.
           Marseille]
          Length = 1050

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/577 (12%), Positives = 162/577 (28%), Gaps = 47/577 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  W+++   +I   GL       L ++ LD  P       I                  
Sbjct: 12  NRFWVLLAALVIAGWGLWS-----LNKTPLDALPDLSDTQVI---------IRAQYPGKA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D+  +     +V  ++  V
Sbjct: 58  PQIVEDQVTYPLTTALLAVPGAKTVRGYSFFGDSFVYVLFDDATDQYWARSRVLEYISQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +  L    T                 +   +           ++       +
Sbjct: 118 QSRLPQGVRAELGPDGTGVGWVFEY-ALVDRSGQNDLSQLRTLNDWFLKFELKTVPDVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +LR    + AK+       N    G +  +        +   
Sbjct: 177 VASIGGMVKQYQVILDPDKLRAFGISHAKVLDALAKANQESGGSVVEMAETEYMVRSHGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                     V ++ ++ G     +        P        +
Sbjct: 237 LRSLEDFRN------------------VLLNANDAGTPVLLKDVATVRIGPEMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI+      A L++        +           + +  
Sbjct: 279 NGEGEVAGGVVVMRSGKNALETIKAVKAKLATLQSSLPKGVEIVTTYDRSKLITAAVTNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        +V +V  + + + +  LVA  S+ L V+    ++   G    L S+ GI +
Sbjct: 339 RDKLIEEFVVVALVCAIFLFHLRSALVAIISLPLGVLAAFIVMRYQGVNANLMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI-------------- 468
            +G  VD+ I++ E   +          + ++     +  I +S I              
Sbjct: 399 AVGAMVDAAIVMIENAHKHLEAYSHAHPNQEISAKERWDLIAESAIEVGPALFFSLLIVT 458

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            + I    L    G      A T   ++  +   AI+++  +M ++IR +          
Sbjct: 459 LSFIPVFALEAQEGKLFAPLAYTKTYTLAAAAGLAITLIPVLMGYMIRGRIPSEASNPIN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
                I        +    W + I+ +  + ++  LF
Sbjct: 519 RVLIRIYRPWLNASLAHPKWTIAIAFIALVLTVIPLF 555



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 87/281 (30%), Gaps = 12/281 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               I + +       +       +       V L  + +   S     I  +N       
Sbjct: 765  RFPINVRYPQEYRNSVQTLREFPIVTERGAQVRLGDITNIKVSDGPPMIRSENARLSGWV 824

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             V ++     +  +     + K+                   +   +L  + ++ + ++ 
Sbjct: 825  YVDVRGTDLHTAVKAMQAAVAKEVQLPPGYSIGWSGQFEYLERALAKL--QTVIPLTLAV 882

Query: 678  IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            I +L+Y+  R     AL  + T+   +     F  L G   ++      + L G +    
Sbjct: 883  ILILLYLAFR-SVSEALLLMLTVPFALIGGFWFVWLLGHAVSVATAVGFIALAGLAAEFG 941

Query: 738  VVVYDRMRKNMKLYT------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
            VV+   +R ++          T     + I +     +     T       ++P+     
Sbjct: 942  VVMLVYLRNSLNQRLQSGLPLTKELIAEAIREGAVLRVRPKAMTVAVILAGLIPIMFGSG 1001

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G  V+   A PM  G++ A   S+F+       + + + +
Sbjct: 1002 AGSEVMQRIAAPMVGGMITAPLLSLFVIPAAWRLLQERKLR 1042



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 12/134 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+++ +  +      F    AL AI +L L +          G+  NL ++  +   +G 
Sbjct: 347 VVVALVCAI----FLFHLRSALVAIISLPLGVLAAFIVMRYQGVNANLMSLGGIAIAVGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDL--------IDKSINETLGRSVYTSMAAFISVL 784
            V+  +V+ +   K+++ Y+ +   +++        I +S  E      ++ +   +S +
Sbjct: 403 MVDAAIVMIENAHKHLEAYSHAHPNQEISAKERWDLIAESAIEVGPALFFSLLIVTLSFI 462

Query: 785 PMAVWGGSVIGSFA 798
           P+          FA
Sbjct: 463 PVFALEAQEGKLFA 476


>gi|57237919|ref|YP_179167.1| AcrB/AcrD/AcrF family protein [Campylobacter jejuni RM1221]
 gi|57166723|gb|AAW35502.1| AcrB/AcrD/AcrF family protein [Campylobacter jejuni RM1221]
          Length = 1005

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/542 (11%), Positives = 152/542 (28%), Gaps = 50/542 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++ +  +   GL+ A    +        P     ++I+      G  + V     
Sbjct: 8   RPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIKITSKIN------GDLNFV----- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S +        +     +   + F   +  E  A+ V   +  +
Sbjct: 57  ----ESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAANDVRDKIGTL 112

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L   P+   + + +   IS+ L            ++   EI  +    +   E   +
Sbjct: 113 --SLPSKPEIEKISSDSGSAISLFLY-------SKDKLQLMREINDKIKPFLQRVEGVGK 163

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  E  P+ LR+       ++      N  +                 + 
Sbjct: 164 IEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYIIKGYFE 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  E+S + +                            F     NI           +
Sbjct: 224 ATNLEELSNLRIKT------------------------GVFLSDIANISSLYEDEKQSAL 259

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    I+       +L           +            S  
Sbjct: 260 YEGKEGVLLELGKITNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQV 319

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L L+++F+ +      L+A  +I  ++I T  ++ LLG  L   +   + L
Sbjct: 320 IFDMVLGIFLTLVIVFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTL 379

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLD--MGFSRAYSTIFDSNITALIATVVLFFF 480
            IG+ +D  I+V E I ++ +    +  +         +  +I    +   I    +   
Sbjct: 380 SIGIFIDDAIVVIENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSI 439

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G       I++   I+IS   ++ ++ ++    +  K+ K  +        +      +
Sbjct: 440 SGLFFNALGISVASGIVISFLVSVFLIPSIGARFLNPKESKFYEKTEAFFEKIEQKYENL 499

Query: 541 QF 542
            +
Sbjct: 500 LY 501



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 7/200 (3%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                      V   +     +I    +I         I + L +     V+   + ++I
Sbjct: 274 TNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVI 333

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                      L A   +   I  T     L G + N     A+   IG  ++D +VV  
Sbjct: 334 VFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI- 392

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +N+     +          INE     +  S+      +P++      G    +  I
Sbjct: 393 ---ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGI 449

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +A GIV++   S+F+   I
Sbjct: 450 SVASGIVISFLVSVFLIPSI 469



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 93/256 (36%), Gaps = 9/256 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +++  S++                KN  V++     D         ++    
Sbjct: 747 ISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQKLLLDNMD 806

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             +    ++         +  E ++   + V ++ + + + +   ++ +   L  + T+ 
Sbjct: 807 KILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFILPLIIMITMP 866

Query: 702 LDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           L     ++G F + G  F+L  + A++ L G    + +++ D      K     +     
Sbjct: 867 LAFGGASIGLF-ITGHNFSLFVLIAIILLFGMVGKNAILLVDVAN---KKCHEGLDLDKA 922

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  +    L   + T+ A   ++LP+A+    G       AI + FG++ +   ++ +  
Sbjct: 923 LLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLISSTLLTLLVVP 982

Query: 818 PILLFIYDWRAKNARI 833
            +  F +   +K  +I
Sbjct: 983 ALFKFCFKLDSKLRKI 998


>gi|315917322|ref|ZP_07913562.1| acriflavin resistance protein B [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691197|gb|EFS28032.1| acriflavin resistance protein B [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 977

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/558 (11%), Positives = 156/558 (27%), Gaps = 29/558 (5%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    + +   ++       +     + I + F      +    ++   + 
Sbjct: 15  AVAEDVETQITKKIEAILPNVEGIDKIESTSSYGSSSIVVKFNFGTNADQKVTEIQREVS 74

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L  D    +         S+ +             E +  +      +       
Sbjct: 75  KILNDLPKDASNPVAKKIQAGIGSLSMVVMMSAPNK---AELTTFVDEYLKPKFESLPGA 131

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q         QL  + D  +L     +  ++                          N 
Sbjct: 132 AQVDVYGNAAKQLQIQVDSEKLAAYNLSPVELYNLISSS-------------------NT 172

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L    ++     L                 I                N+        + 
Sbjct: 173 VLPIGTLQTGTKQLVVRYMGEMQSIEDFENMII--SSNGNTLRLKDISNVVLTREDESNK 230

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             ++       +       S     E A      L+          +          S +
Sbjct: 231 GYISGKEAITILLQKSTDGSTVDLTEKANKALRELKGIMPKGTEYNIIMDTSVDIKSSIT 290

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      L  IVLF+ +   +   +   ++ ++VI T A L   G TL L S+ G+
Sbjct: 291 GVSSNALQGLILATIVLFVFLRNIRATFLITLALPISVIFTFAFLKATGTTLNLISLMGL 350

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +G+G+  D++++V + I     +  S    + + G +   ++IF S +T ++  + + F
Sbjct: 351 SIGVGMLTDNSVVVIDNIYRHITELHSPVLEASENGSTEVSASIFASALTTMLVFIPILF 410

Query: 480 FGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G      R  A  +  S + ++  A++++  +   ++      S D     +      
Sbjct: 411 IPGFAREIFRDMAYAIIFSNVAALIVALTLIPMLASKLMSNDVKISSDGKIFHKMREKYL 470

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGVLANRPVDLSVVR 595
            +    +  R   + I++   + SI +      N      +G   +       +DL    
Sbjct: 471 KLISYALSHRKLTIFITLGIFVFSIFVSSFLKFNFMPKQDQGRYSITAELPNGLDLEKSD 530

Query: 596 SNLESLQIGDISFQNFDG 613
              + ++       N   
Sbjct: 531 KIAKQIEAFVKEEPNTKT 548



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 88/244 (36%), Gaps = 7/244 (2%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D   ++    +  +      +   +            + +    V +   +   ++    
Sbjct: 722 DNKFIKVGDVADIVYGEGSLSIQKKDRIYSVTISANDNGLGVRGVQQAFIEAFKKVNQSD 781

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
            I  +     +     + +    ++I+   +   I  +F+ +      I ++ L +    
Sbjct: 782 AISYSWGGESENMNATMSQLSSALLIAIFLIYALIAAQFESFLLPFVVIGSIPLALIGVF 841

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
               + G   N+  +  ++ L G  VN+ +V+ D +     +    +S  + I ++ +  
Sbjct: 842 LGLFILGQAMNMMTMIGIILLAGIVVNNAIVLIDFI---QLMRVRGMSRTEAIIEAGSTR 898

Query: 769 LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           L   + T+    + ++PMA+    G  +    ++ + FG+ V+   ++ +   +   + D
Sbjct: 899 LRPILMTTATTVLGMIPMALGFGEGSEIYKGMSLAVIFGLSVSTLLTLIVIPILYSLMDD 958

Query: 826 WRAK 829
           +  +
Sbjct: 959 FIMR 962



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/358 (8%), Positives = 101/358 (28%), Gaps = 9/358 (2%)

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           I ++ +        +    T     L   F ++     + ++    K+++    +     
Sbjct: 96  IGSLSMVVMMSAPNKAELTTFVDEYLKPKFESLPGAAQVDVYGNAAKQLQIQVDSEKLAA 155

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           + +        + +    + I  L +     ++   G    I+    + +    N     
Sbjct: 156 YNLSPVELYNLISSSNTVLPIGTLQTGTKQLVVRYMGEMQSIEDFENMIISSNGNTLRLK 215

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            +    L      +  + +       L++            +  + +++    +   +  
Sbjct: 216 DISNVVLTREDESNKGYISGKEAITILLQKSTDGSTVDLTEKANKALRELKGIMPKGTEY 275

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    I   +       +    +A ++                 L + +  T  F 
Sbjct: 276 NIIMDTSVDIKSSITGVSSNALQGLILATIVLFVFLRNIRATFLITLALPISVIFTFAFL 335

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   NL ++  +   +G   ++ VVV D +     +        +  +    E    
Sbjct: 336 KATGTTLNLISLMGLSIGVGMLTDNSVVVIDNI--YRHITELHSPVLEASENGSTEVSAS 393

Query: 772 SVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +++   +  +P+    G    +    A      I+ +  +++ +A  ++  +   
Sbjct: 394 IFASALTTMLVFIPILFIPGFAREIFRDMAYA----IIFSNVAALIVALTLIPMLASK 447


>gi|221067042|ref|ZP_03543147.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
 gi|220712065|gb|EED67433.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
          Length = 1177

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/534 (10%), Positives = 143/534 (26%), Gaps = 48/534 (8%)

Query: 3   NNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            N +LV++  + +   G+  A      ++ +D  P       I                 
Sbjct: 11  TNRFLVLIATAFLVAAGIWSA-----SRTPVDALPDLSDVQVI---------VRTTYPGK 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  PPQVVEDLVTYPLTTTMLSVPGAKTVRGYSFFGDSFVYILFDDKTDPYWARSRVVEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L       L    T                 +   +           ++       
Sbjct: 117 VQSRLPAGATAALGPDATGVGWVYEY-ALVDRSGNNDIGQLRALNDWFLKFELKTVPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     DP R+R L  T + +       N S  G +  +        ++ 
Sbjct: 176 EVASIGGMVRQYQVVLDPDRMRVLGVTQSMVVQALQKANLSSGGSVVEMAETEYMVRSRG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                                                 P        
Sbjct: 236 FLGS-------------------LEHFRTIPLNLSGATPLLLRDVATVQIGPEMRRGIAE 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +   TIE        L+         +           +   
Sbjct: 277 LDGEGEVTGGVVVMRSGKNARATIEAVKARLETLKPSLPKGVEVVETYDRSKLIDRAVDN 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V +V  + + + +  LVA  ++ + V+    ++   G +  + S+ G+ 
Sbjct: 337 LRVKLLEEFAVVAVVCAIFLFHLRSALVAVVTLPIGVLAAFGVMHWQGVSANILSLGGVA 396

Query: 422 LGIGLAVDSNILVNERIREENRKNQ----------SVFCSLDMGFSRAYSTIFDSNITAL 471
           + +G  VD+++++ E   +     +            +  +          +F S +   
Sbjct: 397 IALGAMVDASVVLVEAAHKHLEHFEERHRRPPSVAERWELIAQSAVEVGPALFFSLLVIT 456

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           ++ + +F      G      A T   ++  +   ++++V  +M ++IR +  K 
Sbjct: 457 LSFLPVFTLEAQEGRLFSPLAFTKTYAMAAAAGLSVTLVPVLMGYLIRGRIPKE 510



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 83/262 (31%), Gaps = 12/262 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
                     V L  V   + +     I  +N        V ++ +   SV       + K
Sbjct: 785  PFVTDKGATVLLQDVAKIVIAEGPPMIRSENARLSGWVYVDVRGRDLRSVVHDMQAVVAK 844

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +         +         + +  L  K +V + ++ I ML+Y+  R     AL  +  
Sbjct: 845  QVAMPAGYALSWSGQFEYLERATERL--KIVVPLTLAVIFMLLYVLFRSAGDAALV-MAA 901

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY------TT 753
            +   +     F    G   ++ +    + L G +    VV+   ++   K +        
Sbjct: 902  VPFSLVGGFWFIWALGHVVSVASAVGFIALAGVAAEFGVVMLVYLQNAWKQHLAAGEPDN 961

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAAS 810
              +    I +     +     T       +LP+ V    G  V+   A PM  G+V A  
Sbjct: 962  EATLLAAIREGAVMRVRPKAMTVAVVMAGLLPILVGHGTGSEVMTRIAAPMVGGMVTAPL 1021

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             S+ +       I+  R +  R
Sbjct: 1022 LSMLVIPAAWYLIHRKRPRAGR 1043



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 79/233 (33%), Gaps = 17/233 (7%)

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G    +   +       A    LE +K  + + V +    +   +  +    L  K 
Sbjct: 282 EVTGGVVVMRSGKNARATIEAVKARLETLKPSLPKGVEVVETYDRSKLIDRAVDNLRVKL 341

Query: 670 I--VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
           +    V+    A+ +     F    AL A+ TL + +    G     G+  N+ ++  V 
Sbjct: 342 LEEFAVVAVVCAIFL-----FHLRSALVAVVTLPIGVLAAFGVMHWQGVSANILSLGGVA 396

Query: 728 TLIGYSVNDKVVVY-------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +G  V+  VV+        +   +  +   +     +LI +S  E      ++ +   
Sbjct: 397 IALGAMVDASVVLVEAAHKHLEHFEERHRRPPSVAERWELIAQSAVEVGPALFFSLLVIT 456

Query: 781 ISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +S LP+          F   A    + +  AA  S+ +   ++ ++   R   
Sbjct: 457 LSFLPVFTLEAQEGRLFSPLAFTKTYAMAAAAGLSVTLVPVLMGYLIRGRIPK 509


>gi|313677599|ref|YP_004055595.1| acriflavin resistance protein [Marivirga tractuosa DSM 4126]
 gi|312944297|gb|ADR23487.1| acriflavin resistance protein [Marivirga tractuosa DSM 4126]
          Length = 1009

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 82/685 (11%), Positives = 193/685 (28%), Gaps = 40/685 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M        +  ++  I L+           +   P                   +    
Sbjct: 1   MTRYFIQRPIAVIMFFIALIGLSVLAWLNRPVSLLPDIDVPEM---------AIRVDYAN 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +     E  + ++       +       + L F   +  +    +V   + 
Sbjct: 52  ASPEAIENNILKPMRESLATMQGLSDLQSTASNENGLLRLRFNYGQRMDLAFVEVNEKID 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  +   D  +  ++     +I I   Q       +  IE S         +I   E  
Sbjct: 112 RLTDQFPADMSRPRVIRVNYTDIPIAKVQLIPTDAAN-MIESSRLAENVIKKRIEQIEGI 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                +  +  Q+    D   L++       +S      N    G        +      
Sbjct: 171 SLVDLNGTVDEQIKIIPDLKALQRTGLELEAISQAIQSANQELGGVEVKDGQYQYYMRMA 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             + +  +I+ I +      + P      V  + +++    FF   R  +          
Sbjct: 231 GRLNNAEDIASIPVRINEDKYIPIRQLAEVKTAEEKVSGFHFFNQNRGIVMNIHKQPQAV 290

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P I                       +        P     + +          +
Sbjct: 291 MTDLMPEI---------------------EKSIKQFKKDYPTLDIAITQDQSIFLKAGIN 329

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +G+          VLF+ +   +  ++   S+ L++IL+     + G ++ + S++G+
Sbjct: 330 NLQGSLLFGGLFAFGVLFLFMGSFRLPVIMGISLPLSLILSFLFFEIFGLSINIISLSGL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            LG+G+ +D+ I+V E I  +  +  ++  S   G +     +  S +T L   V L F 
Sbjct: 390 ALGLGMLIDNAIIVLENISRKRMEGLNLIDSCVAGVAEVQGALISSVLTTLAVFVPLIFL 449

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIP 535
            G +       A+++G+ + +S+  +  ++  +     + KK           S      
Sbjct: 450 SGVSGVLFFDQAVSVGIILTVSLGVSFVLLPLLYRLFFKNKKDFKKEDSRFFKSIIQGFE 509

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV-- 593
                 F   R     I ++  +                 +    + +  N P+D+    
Sbjct: 510 KSHHWSFRNKRLSFFMILLILPMGIWSFWNMEQKGLPKITRTDAVVKINWNEPIDVIENA 569

Query: 594 --VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
              +  L++L       +   G   +L+ L+             +    K  ++  L   
Sbjct: 570 NRSQELLDNLNKQLEFSETDAGIPQYLLSLENAELQESLIYLQFQSDNAKAEQLTFLQNQ 629

Query: 652 QNTEIVGPKISRELIRKGIVGVIIS 676
                       E  +     +  S
Sbjct: 630 VKKSYQKASFEMENAKNAFDMLFAS 654



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 86/251 (34%), Gaps = 8/251 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +   +  +       L +    D   +      +          +     +  E + ++I
Sbjct: 757  LKTAKVKNNEGKSYALGNFVDYDWGNRLKKITADVSGTYFSVNLEQETVQKNPEKLTEEI 816

Query: 643  TEIVPLSTIQNTEI-VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
             +    +++              L     + +I   +   I       ++  L  I TL 
Sbjct: 817  NQWASDNSLIQKISGRYFTEQENLKELAFILLISVVLLYFILSAQFESFWQPLIVIFTLP 876

Query: 702  LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS--ISFRD 759
              I   +    L G   N+ +   ++ ++G  VND ++  D M +N+K        S  +
Sbjct: 877  FGIMGAMIVLWLGGSSINIMSAIGMVVMLGIMVNDAILKVDTMNRNLKALEKRDKESVYE 936

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIA 816
             I  +    L   + TS+ + +++ P+ + GG    +     + +  G+ +   ++++  
Sbjct: 937  AIFSAGKIRLKPILMTSITSLLALSPVLLSGGLGAELQKPLVLAVMGGLTIGTFTALYFV 996

Query: 817  APILLFIYDWR 827
               L++    R
Sbjct: 997  P--LVYFQVRR 1005



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/236 (15%), Positives = 93/236 (39%), Gaps = 8/236 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L+ V++  E +       QN     N   + Q    D + +        KK    + ++
Sbjct: 256 QLAEVKTAEEKVSGFHFFNQNRGIVMNIHKQPQAVMTDLMPEIEKSIKQFKKDYPTLDIA 315

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
             Q+  I        L    + G + +   + +++     +   +    +L L +  +  
Sbjct: 316 ITQDQSIFLKAGINNLQGSLLFGGLFAFGVLFLFMG---SFRLPVIMGISLPLSLILSFL 372

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
           FF +FG+  N+ +++ +   +G  +++ ++V + +    +     ++  D     + E  
Sbjct: 373 FFEIFGLSINIISLSGLALGLGMLIDNAIIVLENI---SRKRMEGLNLIDSCVAGVAEVQ 429

Query: 770 GRSVYTSMAAFISVLPM-AVWGGSVIGSFAIPMAFGIVVAASSSI-FIAAPILLFI 823
           G  + + +      +P+  + G S +  F   ++ GI++  S  + F+  P+L  +
Sbjct: 430 GALISSVLTTLAVFVPLIFLSGVSGVLFFDQAVSVGIILTVSLGVSFVLLPLLYRL 485



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 58/521 (11%), Positives = 132/521 (25%), Gaps = 48/521 (9%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            RN      +  +I  +G+                P                         
Sbjct: 517  RNKRLSFFMILLILPMGIWSFW-----NMEQKGLPKITR--------------------- 550

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D  V        D + +  +         +++ + +      S     I   +   L  
Sbjct: 551  TDAVVKINWNEPIDVIENANR--------SQELLDNLNKQLEFSETDAGIPQYL---LSL 599

Query: 122  VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             N++L          +   K   +   QN + +    A  +               E   
Sbjct: 600  ENAELQESLIYLQFQSDNAKAEQLTFLQNQVKKSYQKASFEMENAKNAFDMLFASEEPYF 659

Query: 182  QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
            +       L     E     L        +        ++                  Q 
Sbjct: 660  RVQWQDPNLKNANPESVKPALENFPCDNFQAGPSLEEESSMILTIKQKELLHYGISPEQI 719

Query: 242  LVEDKVEISG---IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
            + + +  +       L                  +     A+      +           
Sbjct: 720  INQLERVLGNYKISELKQFAIITPVVLETDEKAFADLLKTAKVKNNEGKSYALGNFVDYD 779

Query: 299  DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
             G  L     + +       +      +    L   +   +    L          +  +
Sbjct: 780  WGNRLKKITADVSGTYFSVNLEQETVQKNPEKLTEEINQWASDNSLIQKISGRYFTEQEN 839

Query: 359  DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                     I   L+  +L          L+  F++   ++  + +L L G+++ + S  
Sbjct: 840  LKELAFILLISVVLLYFILSAQFESFWQPLIVIFTLPFGIMGAMIVLWLGGSSINIMSAI 899

Query: 419  GIVLGIGLAVDSNILVNERIREE-----NRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
            G+V+ +G+ V+  IL  + +         R  +SV+ ++          I  ++IT+L+A
Sbjct: 900  GMVVMLGIMVNDAILKVDTMNRNLKALEKRDKESVYEAIFSAGKIRLKPILMTSITSLLA 959

Query: 474  TVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMM 511
               +   GG      +   + +   + I  FTA+  V  + 
Sbjct: 960  LSPVLLSGGLGAELQKPLVLAVMGGLTIGTFTALYFVPLVY 1000


>gi|152981114|ref|YP_001353409.1| silver efflux pump [Janthinobacterium sp. Marseille]
 gi|151281191|gb|ABR89601.1| silver efflux pump [Janthinobacterium sp. Marseille]
          Length = 1050

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/576 (12%), Positives = 157/576 (27%), Gaps = 47/576 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  W+++   +I   GL       L ++ LD  P       I                  
Sbjct: 12  NRFWVLLAALVIAGWGLWS-----LSKTPLDALPDLSDTQVI---------IRAQYPGKA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D+  +     +V  ++  V
Sbjct: 58  PQIVEDQVTYPLTTALLAVPGAKTVRGYSFFGDSFVYVLFDDATDQYWARSRVLEYISQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +  L    T                 +   +           ++       +
Sbjct: 118 QSRLPQGVRAELGPDGTGVGWVFEY-ALVDRTGQNDLSQLRTLNDWFLKFELKTVPDVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +LR    + AK+       N    G +  +        +   
Sbjct: 177 VASIGGMVKQYQVILDPDKLRAFGISHAKVLDALAKANQESGGSVVEMAETEYMVRSHGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                     V ++ +E G              P        +
Sbjct: 237 LRSLEDFRN------------------VLLNANEAGTPVILRDVATVRIGPEMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI+      A L+         +           +    
Sbjct: 279 NGEGEVAGGVVVMRSGKNALETIKAVKAKFATLQNSLPKDVEVVTTYDRSKLITAAVINL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        +V +V  + + + +  LVA  S+ L V+    ++   G    L S+ GI +
Sbjct: 339 RDKLIEEFVVVALVCAIFLFHLRSALVAIISLPLGVLTAFIVMRYQGVNANLMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI-------------- 468
            +G  VD+ I++ E   +          + ++     +  I +S I              
Sbjct: 399 AVGAMVDAAIVMIENAHKHLEAYAHAHPNQEINARERWDLIAESAIEVGPALFFSLLIVT 458

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            + I    L    G      A T   ++  +   AI+++  +M ++IR +          
Sbjct: 459 LSFIPVFALEAQEGKLFAPLAYTKTYTLAAAAGLAITLIPVLMGYMIRGRIPSEASNPIN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                         +    W + I+ +  + ++  L
Sbjct: 519 RVLIRAYRPWLNASLAHPKWTIVIAFIGLVLTVIPL 554



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 84/281 (29%), Gaps = 12/281 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               I + +       +       +       V L  + +   +     I  +N       
Sbjct: 765  RFPINVRYPQDYRNSVQTLRDFPIVTDRGAQVRLGDITNIKVTDGPPMIRSENARLSGWV 824

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             V ++     S  +     + K+                   +   +L  + ++ + ++ 
Sbjct: 825  YVDVRGTDLHSAVKAMQAAVAKEVKLPPGYAIGWSGQFEYLERAVAKL--QTVIPLTLAV 882

Query: 678  IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            I +L+Y+        A   + T+   +     F    G   ++      + L G +    
Sbjct: 883  IFILLYLAF-HSISEAFLLMLTVPFALIGGFWFVWFLGHAVSVATAVGFIALAGLAAEFG 941

Query: 738  VVVYDRMRKNMKLYT------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
            VV+   +R ++          +     + I +     +     T       ++P+     
Sbjct: 942  VVMLVYLRNSLNQRLQSGLPLSKELIAEAIREGAVLRVRPKAMTVAVILAGLIPIMFGSG 1001

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G  V+   A PM  G++ A   S+F+       + + + +
Sbjct: 1002 AGSEVMQRIAAPMVGGMITAPLLSLFVIPAAWRLLQERKLR 1042



 Score = 51.2 bits (120), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 53/134 (39%), Gaps = 12/134 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+++ +  +      F    AL AI +L L +          G+  NL ++  +   +G 
Sbjct: 347 VVVALVCAI----FLFHLRSALVAIISLPLGVLTAFIVMRYQGVNANLMSLGGIAIAVGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDL--------IDKSINETLGRSVYTSMAAFISVL 784
            V+  +V+ +   K+++ Y  +   +++        I +S  E      ++ +   +S +
Sbjct: 403 MVDAAIVMIENAHKHLEAYAHAHPNQEINARERWDLIAESAIEVGPALFFSLLIVTLSFI 462

Query: 785 PMAVWGGSVIGSFA 798
           P+          FA
Sbjct: 463 PVFALEAQEGKLFA 476


>gi|221067035|ref|ZP_03543140.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
 gi|264678605|ref|YP_003278512.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni
           CNB-2]
 gi|299529838|ref|ZP_07043270.1| Co/Zn/Cd efflux pump protein CzcA [Comamonas testosteroni S44]
 gi|220712058|gb|EED67426.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni KF-1]
 gi|262209118|gb|ACY33216.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni
           CNB-2]
 gi|298722141|gb|EFI63066.1| Co/Zn/Cd efflux pump protein CzcA [Comamonas testosteroni S44]
          Length = 1057

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/592 (9%), Positives = 144/592 (24%), Gaps = 54/592 (9%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVNGF 69
            M+  + L         +  +D  P                   +  +            
Sbjct: 16  VMVAVLALAALGVYNYQRLAIDAVPDITNVQ-----------VQINTQASGYSPLETEQR 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    + + + L          R   +++T+ F D          V   +Q     L   
Sbjct: 65  VTYPIETVMAGLPNLEQTRSLSRYGLSQVTVVFKDGTDIYFARQLVNERIQQARDNLPAG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
               L   +T      + +          D      ++           Q+       + 
Sbjct: 125 VTPTLGPISTGLGEIYLWTVEAEDGAKKADGTPYTPMDLREIQDWVIKPQLRNVPGVTEI 184

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   +      P +L     T A +       N +               G QYL+
Sbjct: 185 NSIGGFAKEYLVSPRPEQLASYGFTLADLVAALERNNTNVGAGYIE------RQGEQYLI 238

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               ++SGI                + ++       +         +G    +       
Sbjct: 239 RAPGQVSGI--------------ADIREVIVGSAQGQPIRIRDLAEVGLGRELRTGAATD 284

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +           +     +        +          I           + +  K
Sbjct: 285 NGREVVLGTVFMLIGENSRVVSQAVAARMEQINRSLPEGVKAITVYDRTNLVDKAIATVK 344

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                 A LV+++LF+ +   +  L+    I L+++ T   +     +  L S+  +  G
Sbjct: 345 KNLVEGAALVVVILFLFLGNLRAALITALIIPLSMLFTFTGMVQYKVSANLMSLGALDFG 404

Query: 424 IGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           I   +D  +++ E                      F  +      A   +    +  ++ 
Sbjct: 405 II--IDGAVVIVENCVRRLAHAQEARGRSLTRSERFHEVFAAAKEARRPLLFGQLIIMVV 462

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + +F      G      A+T+ +++  +M  +I+ + A +   +  K  +  +   +  
Sbjct: 463 YLPIFALTGVEGKMFHPMALTVVIALAGAMLLSITFIPAAIALFMGNKVAEKENRLMVWA 522

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +    +               +   +  +              +G   + 
Sbjct: 523 RRVYAPALHRVMRAPAVVLTAAGVAVVLSLLLATRLGSEFAPNLNEGDFAIQ 574



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 12/216 (5%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S  I     Q    +    + +          + V E  ++  +  +P        
Sbjct: 808  SAVASFDIAPGPNQVSREDGKRRIVVSANVRGRDIGSFVTEAQQRLESLQLPAGYWTRWG 867

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                 +     ++  + V  + + + + ++  F      L  I    +    T G  AL+
Sbjct: 868  GTFENL-ESARKRLTIVVPAALLMVFVLLFAMFGNVRDGL--IVFTGIPFALTGGILALW 924

Query: 715  --GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              GI  +++A    + L G +V + +V+   +R    L        + + +     L   
Sbjct: 925  MRGIPLSISAAIGFIALSGVAVLNGLVMIAYIR---SLREEGKRLYEAVTEGALTRLRPV 981

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
            + T++ A +  +PMA+    G  V    A  +  GI
Sbjct: 982  LMTALVASLGFVPMAIATGTGAEVQRPLATVVIGGI 1017



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 88/270 (32%), Gaps = 21/270 (7%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+        +   +L  + +G         +    V L          +RV+      
Sbjct: 252 EVIVGSAQGQPIRIRDLAEVGLGRELRTGAATDNGREVVLGTVFMLIGENSRVVSQAVAA 311

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGV------IISAIAMLIYIWIRFKWYFALG 695
             E +  S  +  + +       L+ K I  V        + + +++++        AL 
Sbjct: 312 RMEQINRSLPEGVKAITVYDRTNLVDKAIATVKKNLVEGAALVVVILFL-FLGNLRAALI 370

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MR------KNM 748
               + L +  T      + +  NL ++ A+    G  ++  VV+ +  +R      +  
Sbjct: 371 TALIIPLSMLFTFTGMVQYKVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQEAR 428

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGI 805
               T       +  +  E     ++  +   +  LP+    G    +    A+ +   +
Sbjct: 429 GRSLTRSERFHEVFAAAKEARRPLLFGQLIIMVVYLPIFALTGVEGKMFHPMALTVVIAL 488

Query: 806 VVAASSSI-FIAAPILLFIYDW-RAKNARI 833
             A   SI FI A I LF+ +    K  R+
Sbjct: 489 AGAMLLSITFIPAAIALFMGNKVAEKENRL 518


>gi|114778194|ref|ZP_01453066.1| Acriflavin resistance protein [Mariprofundus ferrooxydans PV-1]
 gi|114551441|gb|EAU53996.1| Acriflavin resistance protein [Mariprofundus ferrooxydans PV-1]
          Length = 1095

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/668 (11%), Positives = 189/668 (28%), Gaps = 32/668 (4%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
           I+  +I  IGL+  +     ++ +   P+A                 + ++    + V  
Sbjct: 24  IISILIFLIGLVALVLTPREENPVIDVPAAN--------------VIVRMQGASPEEVQN 69

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    + +   +        +       +T+ F     KE    K+   +     ++  
Sbjct: 70  LIVRPLEMVLGEMTGVDHTYGTAMDSMGVVTVMFKVGEDKEASLVKLYDRMMHNLDRIPP 129

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
              + L+      ++ + +   +   +   A+++  E   +  +Q+   +          
Sbjct: 130 GASQPLIKPLDVDDVPVSVITLSTPAMDGLALKRLAE---RVREQLIPLKGVSVADIVGG 186

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
              ++  + DP+R+     T  ++       N+                     ++   +
Sbjct: 187 RDREVRIDLDPARMTAYGITLDQLHQVLAAANSGGPVGDLVGENHVTKVWLDGYLKSAQD 246

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +  + +  A            V     E+            IG   A          P +
Sbjct: 247 VGRLIVGEADGKAVYLRDIASVVDGPAEVEQYHR-------IGFGAADKKGFGEEERPAV 299

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
           + A+   +   +   T      L ++            +   +      + ++      I
Sbjct: 300 SIALAKKRGTNAVFVTERINKKLESLKGDLIPDNVQVTITRDSGNLANAAVNMLIEHLGI 359

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
               V+I++ + +   +   +   +I L + + LA+  L   T+   ++  ++L +GL V
Sbjct: 360 AIVSVIIIMLLFL-GWREAAIVTMNIPLILFIVLAIGLLADQTINRITLFALILSLGLLV 418

Query: 429 DSNILVNERIREENRKN----QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
           D  I+V E I           Q     +    +        + I  ++A + + F  G  
Sbjct: 419 DDAIVVIENIHRHLHHGAKSLQDKAELIIRATNETGKPTIIATIAVILAFIPMAFVTGMM 478

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
               A  +  +  I+M  ++ I      +I +        +   +               
Sbjct: 479 GPYMAP-IPFNAPIAMAASLVIAYMFTPWIAQRWLPCR--MVEPTMEEEDEKTTDWVHRT 535

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
                  +     I S+  L    L     ++   Q    A     L+     L+ L  G
Sbjct: 536 YMKLATPLIEKRGIRSLFWLIVLLLFAFSMWEPAWQFVRPAGINGPLTAGTVELKMLPKG 595

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           + +  N   +      L+   G +     ++ +          +      +  G      
Sbjct: 596 NKNTFNITIDMPEGTTLEETDGVTRQIADIVRVNPMVTDYEAYVGQAGPIDFNGMLRGAL 655

Query: 665 LIRKGIVG 672
                   
Sbjct: 656 FRNSPYQA 663



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/246 (18%), Positives = 97/246 (39%), Gaps = 6/246 (2%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
            G           VD          +  G    + F  E+   V +            V 
Sbjct: 256 DGKAVYLRDIASVVDGPAEVEQYHRIGFGAADKKGFGEEERPAVSIALAKKRGTNAVFVT 315

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI----ISAIAMLIYIWIRFKWY 691
           E + KK+  +       N ++   + S  L    +  +I    I+ ++++I + +   W 
Sbjct: 316 ERINKKLESLKGDLIPDNVQVTITRDSGNLANAAVNMLIEHLGIAIVSVIIIMLLFLGWR 375

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            A      + L +   L    L     N   + A++  +G  V+D +VV + + +++   
Sbjct: 376 EAAIVTMNIPLILFIVLAIGLLADQTINRITLFALILSLGLLVDDAIVVIENIHRHLHHG 435

Query: 752 TTS-ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAAS 810
             S     +LI ++ NET   ++  ++A  ++ +PMA +   ++G +  P+ F   +A +
Sbjct: 436 AKSLQDKAELIIRATNETGKPTIIATIAVILAFIPMA-FVTGMMGPYMAPIPFNAPIAMA 494

Query: 811 SSIFIA 816
           +S+ IA
Sbjct: 495 ASLVIA 500



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/192 (13%), Positives = 65/192 (33%), Gaps = 12/192 (6%)

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGA 696
            +             Q       +++ ++ R      I+  I + + +   + ++   +  
Sbjct: 897  MHFTDAVPDDTFGYQMLWDGEMRLTLDVFRDLGAAFIVGLILIYLLMVAYYGEFILPMLV 956

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            +    L +        + G  F  T++  ++ L G  V + +++ D +    +       
Sbjct: 957  MAPTALTLIGIFPGHWITGQPFTATSMIGMIALAGIVVRNSLLLIDFILDYRRQ---GYD 1013

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMAFGIVVAASSSI 813
             +  + ++        + T++A       M    V+GG       + MAFG + A   ++
Sbjct: 1014 VKTAVLEAGAVRARPILLTALAVIAGTSIMISDPVFGG-----LGVSMAFGTLAATVLTL 1068

Query: 814  FIAAPILLFIYD 825
            FI   I      
Sbjct: 1069 FIIPLIYYLWQR 1080


>gi|291276646|ref|YP_003516418.1| putative integral membrane component of efflux system [Helicobacter
           mustelae 12198]
 gi|290963840|emb|CBG39676.1| putative integral membrane component of efflux system [Helicobacter
           mustelae 12198]
          Length = 1061

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/576 (10%), Positives = 157/576 (27%), Gaps = 44/576 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++    +   G+L      + +  +  FP+      +                 
Sbjct: 7   QRPITTLMFAIAVMFFGIL-----GIKKIPVALFPNIDFPIIV---------ISTTYPGG 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E    +        +  +  + + + F   +  E     V   +  
Sbjct: 53  SPEIIESKVTDKVEEAVMGIDGVKKITSNSARNVSIVVVEFYLEKPVEQAMTDVIGKISS 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +    + + ++  +        +I+    +         E            +       
Sbjct: 113 IKFD-DSNIQQPSIRKFDTSGQAIISLFMSSK--QKGPTEIMRHADLIVKPILQSILGVG 169

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     Q+    D + + +   T   +       N    G          S     
Sbjct: 170 GVQLNGYRERQIRIYADSTLMNKYGITYDNLFGMLGKENLEANGGRIESATKDFSITVDA 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +I+ I +                       G           +   L       
Sbjct: 230 NSTSIKDIANIRI-----------------------GKDNVRLSDVAVVEDGLQEETTYA 266

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                          +  +     +        +   +      +           S   
Sbjct: 267 AFNNEPGVIFEVMKVSGANELEVADGVYKALPKI-QVASHGYEIVPFLDTTQYIRHSIKD 325

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    +   L ++++F+ +      LVA  S+ ++++ T AL+ +LG TL + ++  + 
Sbjct: 326 VQFDLMLGGVLAVLIVFLFLRSVTITLVAAISLPISILGTFALIEMLGHTLNMMTMMALT 385

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IG+ +D  I+V E I ++     S   +   G +     I   +   L   V +    
Sbjct: 386 LAIGIIIDDAIVVIENIHKKLELGMSKKQAAYEGVNEIAFAIIAISAMLLSVFVPIANMS 445

Query: 482 GGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G   +    F +T+ L+I+IS    I+++  +   I+  K+ +           +    +
Sbjct: 446 GIIGKFFASFGVTVALAIVISYVVVITVIPMVSSLIVSSKQSRFYHFTEPFFNGMENFYL 505

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGID 574
            I  +      +  ++ F I    +    GL     
Sbjct: 506 KILRLGLSHKLLFSALTFLIFGFSIYVAKGLGMEFM 541



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/167 (15%), Positives = 64/167 (38%), Gaps = 6/167 (3%)

Query: 670  IVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +  +I + I + + +   ++        + T+ L          L    F++ +   ++ 
Sbjct: 851  MTAIITAFILIYLILAALYESLLEPFIIMITMPLSFAGVFFSLKLAHQPFSMFSFMGLIL 910

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            LIG    +  ++ D   +  K +       + I  +    L   + T++A    +LP+AV
Sbjct: 911  LIGIVGKNATLLIDVANEYRKKFKAG--VHEAIIFAGKSRLRPILMTTIAMVFGMLPLAV 968

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                G ++     I M  G++++   S+ +   + + +     K  R
Sbjct: 969  ATGSGYAMKSPIGISMIGGLLISMFLSLLMVPILYVIVAPIDDKLKR 1015



 Score = 44.7 bits (103), Expect = 0.061,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 76/235 (32%), Gaps = 6/235 (2%)

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              V LS V    + LQ         +        ++    + +     +     KI   
Sbjct: 244 KDNVRLSDVAVVEDGLQEETTYAAFNNEPGVIFEVMKVSGANELEVADGVYKALPKIQVA 303

Query: 646 VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                I         I   +       ++   +A+LI           L A  +L + I 
Sbjct: 304 SHGYEIVPFLDTTQYIRHSIKDVQFDLMLGGVLAVLIVFLFLRSVTITLVAAISLPISIL 363

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            T     + G   N+  + A+   IG  ++D +VV + +    K     +S +    + +
Sbjct: 364 GTFALIEMLGHTLNMMTMMALTLAIGIIIDDAIVVIENIH---KKLELGMSKKQAAYEGV 420

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAASSSIFIAA 817
           NE     +  S       +P+A   G +     SF + +A  IV++    I +  
Sbjct: 421 NEIAFAIIAISAMLLSVFVPIANMSGIIGKFFASFGVTVALAIVISYVVVITVIP 475


>gi|251790474|ref|YP_003005195.1| heavy metal efflux pump, CzcA family [Dickeya zeae Ech1591]
 gi|247539095|gb|ACT07716.1| heavy metal efflux pump, CzcA family [Dickeya zeae Ech1591]
          Length = 1045

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/550 (11%), Positives = 147/550 (26%), Gaps = 49/550 (8%)

Query: 4   NPWLVILYSMICC-IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV++ +++    G++      L ++ LD  P       I           +      
Sbjct: 12  NRFLVLVATLLMAGWGVIS-----LQKTPLDALPDLSDVQVI---------IRVSYPGKA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +                + + F D         +V  +L  V
Sbjct: 58  PQVVENQVTYPLTTTMLSVPGAKTVRGFSMFGDAYVYVLFEDGTDPYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L  + K +L    T                     +           ++    +  +
Sbjct: 118 QSTLPTEAKASLGPDATGVGWIYEY-ALVDRSGRHSLADLRAIQDWLLKYELKTVPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     +P RLR L  T  ++       N    G +  +            
Sbjct: 177 VASIGGMVRQYQVVLNPERLRALNVTHQQVIDALRAANQESGGSVIELGEAEYMVRTSGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                    +        G     +        P        +
Sbjct: 237 LLKTED-------------------FLNVAIGRRDGIPVLLQDVATLRQGPEMRRGIAEL 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   T+         +R         +           + +  
Sbjct: 278 NGEGEVAGGVIVMRSGKNALETLRAVHARLQQVRQSLPAGVEIVTTYDRSSLIERAITTL 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  S+ L ++    ++   G    + S+ GI +
Sbjct: 338 SHKLLEEFVVVALVCSLFLFHFRSSLVAIISLPLGILGAFIIMRHQGINANIMSLGGIAI 397

Query: 423 GIGLAVDSNILVNERIR-----------EENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            IG  VD+ I++ E +            +    N + +       +     +F S +   
Sbjct: 398 AIGAMVDAAIVMIENMHKVVEQWRHQHPDREPDNATWWQLATQAATEVGPALFCSLLIIT 457

Query: 472 IATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++ +S    I++V  +M + +R +          
Sbjct: 458 LSFIPVFSLEAQEGRLFSPLAFTKTYAMAVSAGLGITLVPVLMGYFVRGRIPDEQANPLN 517

Query: 529 SRFFLIPDCI 538
                +   I
Sbjct: 518 RWLIALYQPI 527



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 82/246 (33%), Gaps = 10/246 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S+L  +++ +               +         ++ V EM ++   ++     +  + 
Sbjct: 798  SDLAEVRVSEGPPMLKSENGRLSDWIYVDLRGRDLKSAVEEMQRQVAQQVTLPQGVSVSW 857

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +          + V  + + + I +++ F +   AL  + TL   +   +    L 
Sbjct: 858  SGQFEYLERATETMKLVVPFTLLIIFILLYVTFGQIKDALLIMGTLPFALIGGVWLLYLL 917

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTTSISFRD---LIDKSINET 768
            G   ++      + L G +    V++    +   +  +    +++       I +     
Sbjct: 918  GYNLSVAGAVGFIALAGVAAEFGVIMLLYLNHAVEKHRRPGQALTNEQLTAAIREGAVLR 977

Query: 769  LGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   + T       +LP+   GG    ++   A PM  G+V A   S+ +   + L ++ 
Sbjct: 978  VRPKMMTVATIMAGLLPIMWGGGTGSEIMQRIAAPMVGGMVSAPLLSMLVIPALFLLLHR 1037

Query: 826  WRAKNA 831
                  
Sbjct: 1038 NSVDKQ 1043



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 15/169 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+++ +  L      F +  +L AI +L L I          GI  N+ ++  +   IG 
Sbjct: 346 VVVALVCSL----FLFHFRSSLVAIISLPLGILGAFIIMRHQGINANIMSLGGIAIAIGA 401

Query: 733 SVNDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVL 784
            V+  +V+ + M    +  +               L  ++  E       + +   +S +
Sbjct: 402 MVDAAIVMIENMHKVVEQWRHQHPDREPDNATWWQLATQAATEVGPALFCSLLIITLSFI 461

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           P+          F   A    + + V+A   I +   ++ +    R  +
Sbjct: 462 PVFSLEAQEGRLFSPLAFTKTYAMAVSAGLGITLVPVLMGYFVRGRIPD 510


>gi|329113623|ref|ZP_08242402.1| Multidrug resistance protein MdtC [Acetobacter pomorum DM001]
 gi|326697069|gb|EGE48731.1| Multidrug resistance protein MdtC [Acetobacter pomorum DM001]
          Length = 1079

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 67/523 (12%), Positives = 135/523 (25%), Gaps = 38/523 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L       GL+      LP+  +   P       IS+     GGS        
Sbjct: 10  RPVATTLLLLSAVLSGLMA-----LPRLPVSDLPDVDLP-VISVSASNAGGS-------- 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +     +      + +  + +  I+L F   R     A  V   ++  
Sbjct: 56  PEVMARTVAAPLERHLGNIAGVTQMMSTSTRGETSISLGFELGRDLNGAARDVEAAIRAA 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L   P  +          + VL    +   +         +       +        
Sbjct: 116 RRDLPTTPGSDPSYHRANPNATPVLI-LAVTPGMQPMPRLYDLVNTTLRPMLLQVPGVGD 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            +        +  E +P    +       +       N                      
Sbjct: 175 VMLMGSSAPAVRVEMNPLLFFKYGMGFENLRAALASANAHTP------------------ 216

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                            N          D+       R         +   +  V     
Sbjct: 217 --KGAIDMAGQRYQLAVNDQADHAAAYRDLVIAYKNGRPIRLRDVATVTDSMQDVNAAAF 274

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   +    +E        LR    P     V          S    
Sbjct: 275 FDGTPALTLMVRAQPGANLVGIVEAVKARLPQLRTLMPPGADITVARDGSAVIRSSLHHT 334

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      L L V+++ +      + A   +   +I +L  + L G  L   S+  + +
Sbjct: 335 LVTLLAACILALAVVWVFLRSWTASIAAAIIVPCCLIASLGPMHLAGFGLDNLSLMALTV 394

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLFF 479
             GL VD  I+V E I     +  S+  +   G S    T   I  S +   +   +   
Sbjct: 395 VTGLVVDDAIVVIENIIRMREQGLSINEAAIAGASEVAFTLLSITVSVLAVFLPIGLASG 454

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
             G   R FA T+G+++ +S+  +  +   +    +R+ + ++
Sbjct: 455 LTGRLFREFAGTVGITVTVSLVLSCVVTPCLTALCMRFAENRT 497



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 53/263 (20%), Positives = 106/263 (40%), Gaps = 10/263 (3%)

Query: 572  GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            G +   G  +   A   V LSVV     SL    ++   +    +  + L      S AQ
Sbjct: 818  GANASTGSAVATGAETLVPLSVVARITPSLDPVAVTHIGYASSASLALELAPGVSLSQAQ 877

Query: 632  TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              + +  +K+         +Q+ E        +      + +I + +A+ + + + ++  
Sbjct: 878  AIIDQEWRKQHLPKEISGELQSDE----GDVGKSTHDSEILIIAAVLAVYLTLGMLYESV 933

Query: 692  FALGAITTLILDITK-TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            +    I + I       +    LFG+ F+  AV A+L L G S+ + +++ D        
Sbjct: 934  WHPLTILSTIPSAGIGAVVALDLFGLPFSGMAVIAMLLLTGISLKNAILLVD--FAIHAE 991

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVV 807
                ++ RD I ++    L   V T+ AA +  LP+ + GG    +     I +  G++V
Sbjct: 992  REHGMTPRDAIREACLLRLRPIVMTTFAAALGALPLVLMGGYGMELRQPLGIALIGGLLV 1051

Query: 808  AASSSIFIAAPILLFIYDWRAKN 830
            + + ++F    + L +    AKN
Sbjct: 1052 SQAQTMFTTPALYLLVARGAAKN 1074



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/152 (15%), Positives = 56/152 (36%), Gaps = 6/152 (3%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W  ++ A   +   +  +LG   L G   +  ++ A+  + G  V+D +VV + +
Sbjct: 351 VFLRSWTASIAAAIIVPCCLIASLGPMHLAGFGLDNLSLMALTVVTGLVVDDAIVVIENI 410

Query: 745 RKNMKLYTTSISFRDLIDKSINE---TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
              +++    +S  +      +E   TL     + +A F+ +   +   G +   FA  +
Sbjct: 411 ---IRMREQGLSINEAAIAGASEVAFTLLSITVSVLAVFLPIGLASGLTGRLFREFAGTV 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
              + V+   S  +   +      +      +
Sbjct: 468 GITVTVSLVLSCVVTPCLTALCMRFAENRTAV 499


>gi|166365078|ref|YP_001657351.1| multidrug efflux transporter [Microcystis aeruginosa NIES-843]
 gi|166087451|dbj|BAG02159.1| multidrug efflux transporter [Microcystis aeruginosa NIES-843]
          Length = 1034

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/618 (12%), Positives = 184/618 (29%), Gaps = 52/618 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +  +++L   +  IGL      FL +  +D  PS      ISL         + +   
Sbjct: 13  RRHIGVLMLTIAVIIIGLF-----FLNRLEVDLLPSITYPR-ISL--------RMNVPGV 58

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +E  S  +         R+ + ++ L F          ++ T     
Sbjct: 59  SPEVILEEVTKPLEEGMSATEGVVQVYSETREGRMRVDLFFQPGGDLNVALNEATESFNR 118

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    ++  L       + +   +  +        +  +    +   ++G  E   
Sbjct: 119 VRQNLPDIIEEPRLNKFEPSRLPV--YEFAVVSDTLPLKDLRLFADEELGRELGFVEGVA 176

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                  +  ++    D  RL+ L     ++       N    G                
Sbjct: 177 VVDVIGGVREEIQVNIDLQRLQSLGVGLNQVLDTLKRRNQDISGGRLEGE---------- 226

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G  L  A   F        + ++       + +      +           
Sbjct: 227 --------TGEPLTRAVGKFKNVADIQDLALTDSNNPEEKIYLRDVARVIDGTEEQRIFV 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI--KLNIVEERNVGADLGSD 359
            L      +     +   +    +E        L+   L       +           + 
Sbjct: 279 TLNGKNAVRVSVQKQPNANTIAVVEGVKKRITELKKSGLMTGGIQVVPTTDESVFIQNAV 338

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +    +      L  + +F+ +   +   +   +I L+ ++ +  + L G ++ + S+ G
Sbjct: 339 NNVVSSGLAGTILAGLTVFVFLGSLRQTFIITLAIPLSTLVAIICMKLFGLSINVFSLGG 398

Query: 420 IVLGIGLAVDSNILVNERI---REENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + LG+G+ VD++I++ E I     +N+  Q              S +  S  T L++ + 
Sbjct: 399 LALGVGIVVDNSIVMLENIALKVNQNQNKQDFLEIARNSSQEVESALLASTATNLVSILP 458

Query: 477 LFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI--------IRYKKMKSIDI 525
               GG          +T+  ++  S+  A+++V  +   +        I    +  +  
Sbjct: 459 FLLLGGFISLLFNEIILTISFAVAASLLCALTVVPMLASRLLNMQVSSGIHRFWLLRVFS 518

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV-- 583
             L    ++      + +  R   + ++ L    S   L+ +            Q+ V  
Sbjct: 519 QRLEGLTILYGRFLAKIIHYRIPVILLAFLILGGSSFYLWQYIPQEVFSRIQTGQVNVFA 578

Query: 584 LANRPVDLSVVRSNLESL 601
                 +L+  R  +  +
Sbjct: 579 QFPPGTNLNTNRQVMREV 596



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/179 (11%), Positives = 67/179 (37%), Gaps = 6/179 (3%)

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
              +  +        ++  G+ G I++ + + +++               + L     + 
Sbjct: 326 PTTDESVFIQNAVNNVVSSGLAGTILAGLTVFVFLG---SLRQTFIITLAIPLSTLVAII 382

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETL 769
              LFG+  N+ ++  +   +G  V++ +V+ + +   +        F ++   S  E  
Sbjct: 383 CMKLFGLSINVFSLGGLALGVGIVVDNSIVMLENIALKVNQNQNKQDFLEIARNSSQEVE 442

Query: 770 GRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              + ++    +S+LP  + GG    +     + ++F +  +   ++ +   +   + +
Sbjct: 443 SALLASTATNLVSILPFLLLGGFISLLFNEIILTISFAVAASLLCALTVVPMLASRLLN 501



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 75/248 (30%), Gaps = 11/248 (4%)

Query: 585  ANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 +   +                   ++   + +      +     +  +     + 
Sbjct: 792  FVNRQEDLKLADIARIEGGKTPGVIQRINQRQVFIIIGSLVEGAKLSDALAGVQSLLNST 851

Query: 645  IVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILD 703
             +P                     G++  + S   + + + +++      L  +  L + 
Sbjct: 852  PLPDGISILPSAAATSNQEIQGSLGLLAGL-SVFLVFVVMAVQYNSLIDPL--VIMLTVP 908

Query: 704  ITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
            +    G F         N   +  V+ L+G  VN+ +++ +    N        +    I
Sbjct: 909  LALAGGIFGLYWTKTPINAIVIVGVVLLVGIVVNNGIIMVE--LANQLRQEFGFTRLQAI 966

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             K+  + L   + T++   + + P+A+    GG  +    I +  G+ +A   ++FI   
Sbjct: 967  LKAAPQRLRPILMTTVTTVLGLFPLALGLGEGGQFLQPLGIVVFSGLSLATLLTLFIIPC 1026

Query: 819  ILLFIYDW 826
              +     
Sbjct: 1027 FYVLFSRK 1034


>gi|110638900|ref|YP_679109.1| cation/multidrug efflux pump [Cytophaga hutchinsonii ATCC 33406]
 gi|110281581|gb|ABG59767.1| cation/multidrug efflux pump [Cytophaga hutchinsonii ATCC 33406]
          Length = 1134

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/559 (10%), Positives = 161/559 (28%), Gaps = 38/559 (6%)

Query: 8   VILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVN 67
            +L  ++   GL+            ++FP  +           +     +        + 
Sbjct: 27  YVLTIILSIFGLMS-----YFNMPKEQFPEIVFP---------QMYVATIYPGTSPSDME 72

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +  + ++    +        +  Q  + + + F           KV   +    + L 
Sbjct: 73  KLVTKHIEKQVKGISGVKKITSNSIQDYSSVLVEFNTDVDVNIAKQKVKDAVDQAKNDLP 132

Query: 128 VD-PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
            D P    ++     ++ I+    + D  +S   + + +      DQI       +    
Sbjct: 133 TDLPDDPQVIEVDVSQVPIMGINLSGDYELSKLKKYADD----MQDQIESMREIRRVDII 188

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                ++    D  ++     T + +       N +  G    +            ++  
Sbjct: 189 GAPEREIQINVDKYKMEAANITFSDIERAVQSQNLTISGGTIKMD----------GIKRN 238

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
           + ++G          +      ++ +S           +    +            L   
Sbjct: 239 ITVTGE-------FDEMDQINNLLILSQSGAKTYLKDILENGGVKDTYKEAESFARLNGK 291

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +       +  ++     +    L A  +   LP  L I    +      +        
Sbjct: 292 NVITLNVIKRGGMNLIDASDKIQELIANQQKTKLPDGLKITITGDQSDATRTTLHDLINT 351

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            I+  ++++++ M  +     +    S+ L++ +   +L  +G TL +  +   +L +G+
Sbjct: 352 IIIGFILVVIILMFFMGTTNAIFVGLSVPLSMAIAFIVLPTMGITLNMIVLFAFLLALGI 411

Query: 427 AVDSNILVNERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAV 485
            VD  I+V E         +  +  +        +  +F   +T L   V L F+ G   
Sbjct: 412 VVDDAIVVIENTHRIYENGKVPIKQAAKQAAGEVFMPVFSGTMTTLAPFVPLLFWKGIIG 471

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           + F   + +++++++  ++ +   +                   +         I F   
Sbjct: 472 K-FMYFLPVTLIVTLLASLLVAYIINPVFAVDFMKPHAHDESHKKITRGYIITMIVFAVI 530

Query: 546 RFWGVGISILFSICSICLL 564
              G           + +L
Sbjct: 531 ALLGYAAGSFGFGNFVVVL 549



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/191 (18%), Positives = 73/191 (38%), Gaps = 9/191 (4%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A  ++ E++  +    +P              +R  +   I  +II  I ++I +    
Sbjct: 308 DASDKIQELIANQQKTKLPDGLKITITGDQSDATRTTLHDLINTIIIGFILVVIILMFFM 367

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMR 745
               A+    ++ L +          GI  N+  + A L  +G  V+D +VV +   R+ 
Sbjct: 368 GTTNAIFVGLSVPLSMAIAFIVLPTMGITLNMIVLFAFLLALGIVVDDAIVVIENTHRIY 427

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +N K+       +    ++  E        +M      +P+  W G +IG F   +   +
Sbjct: 428 ENGKV-----PIKQAAKQAAGEVFMPVFSGTMTTLAPFVPLLFWKG-IIGKFMYFLPVTL 481

Query: 806 VVAASSSIFIA 816
           +V   +S+ +A
Sbjct: 482 IVTLLASLLVA 492



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/193 (14%), Positives = 63/193 (32%), Gaps = 50/193 (25%)

Query: 681  LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV------ 734
             + + +   +   L  + T    I+K L   +  G  F++  V   + + G S+      
Sbjct: 940  FLGMAMLTSFIMILFILVTQFNSISKPLLIISEIG--FSVIGVLLGVAIFGMSISVVMTG 997

Query: 735  ------------NDKVVV--YDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
                        N  ++V   D + +           +  I  +    +   + T+ A  
Sbjct: 998  VGIIALAGIVVRNGIILVEFTDIIMEE------GHDLKYAIVHAGKVRMTPVLLTATATI 1051

Query: 781  ISVLPMA------------------VWGGSVIG---SFAIPMAFGIVVAASSSIFIAAPI 819
            + ++P+A                   +GG  +      A  M  G+  A   ++ I  PI
Sbjct: 1052 LGLIPLAVGLNIDFVRLFAEGNPHIFFGGDSVAFWGPLAWTMIHGLAFATFLTL-ILVPI 1110

Query: 820  LLFIYDWRAKNAR 832
            + +I    ++  +
Sbjct: 1111 MYYINYKASRKIK 1123


>gi|317058584|ref|ZP_07923069.1| acriflavin resistance protein B [Fusobacterium sp. 3_1_5R]
 gi|313684260|gb|EFS21095.1| acriflavin resistance protein B [Fusobacterium sp. 3_1_5R]
          Length = 977

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/558 (11%), Positives = 156/558 (27%), Gaps = 29/558 (5%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    + +   ++       +     + I + F      +    ++   + 
Sbjct: 15  AVAEDVETQITKKIEAILPNVEGIDKIESTSSYGSSSIVVKFNFGTNADQKVTEIQREVS 74

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + L  D    +         S+ +             E +  +      +       
Sbjct: 75  KILNDLPKDASNPVAKKIQAGIGSLSMVVMMSAPNK---AELTTFVDEYLKPKFESLPGA 131

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q         QL  + D  +L     +  ++                          N 
Sbjct: 132 AQVDVYGNAAKQLQIQVDSEKLAAYNLSPVELYNLISSS-------------------NT 172

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L    ++     L                 I                N+        + 
Sbjct: 173 VLPIGTLQTGTKQLVVRYMGEMQSIEDFENMII--SSNGNTLRLKDISNVVLTREDESNK 230

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             ++       +       S     E A      L+          +          S +
Sbjct: 231 GYISGKEAITILLQKSTDGSTVDLTEKANKALRELKGIMPKGTEYNIIMDTSVDIKSSIT 290

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      L  IVLF+ +   +   +   ++ ++VI T A L   G TL L S+ G+
Sbjct: 291 GVSSNALQGLILATIVLFVFLRNIRATFLITLALPISVIFTFAFLKATGTTLNLISLMGL 350

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVF-CSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +G+G+  D++++V + I     +  S    + + G +   ++IF S +T ++  + + F
Sbjct: 351 SIGVGMLTDNSVVVIDNIYRHITELHSPVLEASENGSTEVSASIFASALTTMLVFIPILF 410

Query: 480 FGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G      R  A  +  S + ++  A++++  +   ++      S D     +      
Sbjct: 411 IPGFAREIFRDMAYAIIFSNVAALIVALTLIPMLASKLMSNDVKISSDGKIFHKIREKYL 470

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLN-YGIDFKGGIQLGVLANRPVDLSVVR 595
            +    +  R   + I++   + SI +      N      +G   +       +DL    
Sbjct: 471 KLISYALSHRKLTIFITLGIFVFSIFVSSFLKFNFMPKQDQGRYSITAELPNGLDLEKSD 530

Query: 596 SNLESLQIGDISFQNFDG 613
              + ++       N   
Sbjct: 531 KIAKQIEAFVKEEPNTKT 548



 Score = 79.3 bits (193), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 81/215 (37%), Gaps = 8/215 (3%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                       + +    V +   +   ++     I  +     +     + +    ++
Sbjct: 747 DRIYSVTISANDNGLGVRGVQQAFIEAFKKVNQSDAISYSWGGESENMNATMSQLSSALL 806

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I+   +   I  +F+ +      I ++ L +        + G   N+  +  ++ L G  
Sbjct: 807 IAIFLIYALIAAQFESFLLPFVVIGSIPLALIGVFLGLFILGQAMNMMTMIGIILLAGIV 866

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
           VN+ +V+ D +     +    +S  + I ++ +  L   + T+    + ++PMA+    G
Sbjct: 867 VNNAIVLIDFI---QLMRVRGMSRTEAIIEAGSTRLRPILMTTATTVLGMIPMALGFGEG 923

Query: 791 GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             +    ++ + FG+ V+   ++ I  PIL  + D
Sbjct: 924 SEIYKGMSLAVIFGLSVSTLLTL-IVIPILYSLMD 957



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/358 (8%), Positives = 101/358 (28%), Gaps = 9/358 (2%)

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           I ++ +        +    T     L   F ++     + ++    K+++    +     
Sbjct: 96  IGSLSMVVMMSAPNKAELTTFVDEYLKPKFESLPGAAQVDVYGNAAKQLQIQVDSEKLAA 155

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           + +        + +    + I  L +     ++   G    I+    + +    N     
Sbjct: 156 YNLSPVELYNLISSSNTVLPIGTLQTGTKQLVVRYMGEMQSIEDFENMIISSNGNTLRLK 215

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            +    L      +  + +       L++            +  + +++    +   +  
Sbjct: 216 DISNVVLTREDESNKGYISGKEAITILLQKSTDGSTVDLTEKANKALRELKGIMPKGTEY 275

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                    I   +       +    +A ++                 L + +  T  F 
Sbjct: 276 NIIMDTSVDIKSSITGVSSNALQGLILATIVLFVFLRNIRATFLITLALPISVIFTFAFL 335

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   NL ++  +   +G   ++ VVV D +     +        +  +    E    
Sbjct: 336 KATGTTLNLISLMGLSIGVGMLTDNSVVVIDNI--YRHITELHSPVLEASENGSTEVSAS 393

Query: 772 SVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +++   +  +P+    G    +    A      I+ +  +++ +A  ++  +   
Sbjct: 394 IFASALTTMLVFIPILFIPGFAREIFRDMAYA----IIFSNVAALIVALTLIPMLASK 447


>gi|146307239|ref|YP_001187704.1| CzcA family heavy metal efflux protein [Pseudomonas mendocina ymp]
 gi|145575440|gb|ABP84972.1| heavy metal efflux pump, CzcA family [Pseudomonas mendocina ymp]
          Length = 1049

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/598 (10%), Positives = 155/598 (25%), Gaps = 48/598 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L    I  +G+       L  + +D  P       I                  
Sbjct: 12  NRFLVLLATLFITALGIWS-----LRNTPVDALPDLSDTQVI---------IRTSFPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L   
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGYSFFGDSFVYVLFEDDTDLYWARSRVLEYLNQA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       L    T                     +           ++    +  +
Sbjct: 118 QDRLPEGVTTTLGPDATGVGWIYQY-ALVDRSGQHDLAQLRALQDWFLKYELKSLPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L     T  ++       N    G +  +            
Sbjct: 177 VATLGGMVKQYQVLLDPQKLVAYGVTQQEVEAALKSANQETGGAILELAEREYMVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E   +                     V +     G              P        +
Sbjct: 237 LESLDDFRN------------------VPLRASASGIPVLLGQVATIQLGPEMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI         L+A        +           +    
Sbjct: 279 DGQGEVVGGVVILRSGKNARDTIAAVKTKLDSLKASLPTGVEVVTTYDRSQLIDRAIDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  ++ L +++   ++   G    + S+ GI +
Sbjct: 339 SYKLLEEFVVVALVCLIFLWHLRSSLVAIITLPLGILMAFIVMRYQGVNANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            IG  VD+ +++ E   +              + ++ +  +    +     +F S +   
Sbjct: 399 AIGAMVDAAVVMIENAHKHIEAWKARHPNEPLQGEAHWRVIGEAAAEVGPALFFSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++  +   ++++V  +M + IR            
Sbjct: 459 LSFLPVFTLEAQEGRLFGPLAFTKTYAMAAAAGLSVTLVPVLMGYWIRGHIPSEQQNPLN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    +    +      + +++L  + S+  L   G  +      G  L + + 
Sbjct: 519 RWLIGAYRPVLEWVLAWPKVTLALAVLVFVSSLWPLSRLGGEFLPPMDEGDLLYMPSA 576



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 91/287 (31%), Gaps = 15/287 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +   A + + L  V     +     +  +N     
Sbjct: 763  LARFPINLRYPKEWRDSPQALRRMPILTPAGQQITLGTVAQVSLTEGPPMLRSENGRLSG 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V ++ +   S  +     + ++   +     +         + +  L       V  
Sbjct: 823  WVYVDVRGRDLASTVRELQQRVAERVKLDAGMTVSYSGQFEYLERANARLS----WVVPA 878

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + + +++ F ++  AL  + TL   ++  +     FG   ++      + L G S 
Sbjct: 879  TLLIIFVLLYLTFSRFSEALLIMATLPFALSGGIWLLYWFGFNLSVATGVGFIALAGVSA 938

Query: 735  NDKVVVYDRMRKNMKLYTTSI-----SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
               V++   ++        S      +  + I +     +   V T       +LP+   
Sbjct: 939  EFGVIMLLYLKNAWHARLDSGRSGDPALLEAIREGAVLRVRPKVMTVAVIIAGLLPILWG 998

Query: 790  GG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG    V+   A PM  G++ A   S+ +      +    R    ++
Sbjct: 999  GGAGSEVMKRIAAPMVGGMITAPLMSMLVLPA--AYWLMRRQHTQKV 1043



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/162 (17%), Positives = 63/162 (38%), Gaps = 15/162 (9%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+++ +  LI++W       +L AI TL L I          G+  N+ ++  +   IG 
Sbjct: 347 VVVALVC-LIFLW---HLRSSLVAIITLPLGILMAFIVMRYQGVNANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFR--------DLIDKSINETLGRSVYTSMAAFISVL 784
            V+  VV+ +   K+++ +                +I ++  E      ++ +   +S L
Sbjct: 403 MVDAAVVMIENAHKHIEAWKARHPNEPLQGEAHWRVIGEAAAEVGPALFFSLLIITLSFL 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFI 823
           P+          F   A    + +  AA  S+ +   ++ + 
Sbjct: 463 PVFTLEAQEGRLFGPLAFTKTYAMAAAAGLSVTLVPVLMGYW 504


>gi|120553249|ref|YP_957600.1| acriflavin resistance protein [Marinobacter aquaeolei VT8]
 gi|120323098|gb|ABM17413.1| acriflavin resistance protein [Marinobacter aquaeolei VT8]
          Length = 1050

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/558 (11%), Positives = 155/558 (27%), Gaps = 44/558 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L  ++  +G ++AL     +  +  FP+                  +V      + V   
Sbjct: 20  LVMLVMLLGGVMAL----TRMNIQFFPTFALDVV---------SVRVVWSGASAEDVERG 66

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    ++    +        +  Q  + ITL F +        D V   +    + L  D
Sbjct: 67  ITDPLEQRLRSVDGLKKMTSTSAQGVSSITLEFHEGTDPIQAVDDVRQQVDE-FNNLPAD 125

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            ++  +      E  +       D   +   +       + +D+        +       
Sbjct: 126 AEEPQVARVERYE-PVARLLVYGDVDRAELRQLVYRFEDELLDR-----GIDRVTLRGLP 179

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             Q+  +    RL  L  +  +++          +    G+   +D+      VE +   
Sbjct: 180 EQQISIDVPVERLESLGLSLEQIADRVAS---LSRDLPAGMMAQQDATRELRAVEQR--- 233

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                         ++ +    I        R        I +                 
Sbjct: 234 --------------RSPQAFETIPVLSGDRIRMQLGDIAIIRQEARDNQTVMENNGMPAV 279

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
           +         +               R          V +          S+        
Sbjct: 280 ELQLQRAENGNSLTAARVFESWLTDTRPTLPATVNIKVYDETWQLIEDRISLLVNNGLGG 339

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             LV+ +L++ +       VA   I    +  L +L L+G ++ + S+  +++ +G+ VD
Sbjct: 340 LVLVVGLLYLFLPGRVAAWVAVG-IPTAFLAALGVLWLIGGSINMISLFALIMALGVIVD 398

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVR 486
             I+V E      R  +    + +    R    +  S++T + A + L   G   G  + 
Sbjct: 399 DAIVVGEDADAHARMGEQSIYAAEGAAKRMVWPVLASSLTTVAAFMPLLVVGGVIGNILG 458

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
              + M   ++ S+     ++ A +      K  ++           +      +F   R
Sbjct: 459 DIPVVMICVLIASLLECFVVLPAHLRHAFVRKVSENQPERRPHAVARLRRGFEQRFDTFR 518

Query: 547 FWGVGISILFSICSICLL 564
                    +S+    + 
Sbjct: 519 DGPFRRFSRYSLKHRGMT 536



 Score = 80.9 bits (197), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 92/262 (35%), Gaps = 7/262 (2%)

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
             +    ++ +       + + +      + G  + ++ DG+    V        +     
Sbjct: 778  QYSTLERMTIRIPDGRFVPLTQVMNLDHRQGFQALRHADGKLAVEVTSALNTRVATTDQI 837

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYF 692
            +  +    + EI     ++ +        RE +     G++I    M + +   F  W  
Sbjct: 838  LESLQSGPLPEIASRHGVRYSFEGRSADQRETMADMQTGLLIGLALMYVVLAWVFASWSL 897

Query: 693  ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
             L  +  +   +   L    + G++  + ++  +  L G  VN+ +++        +   
Sbjct: 898  PLIVMAIIPFALVGALLGHWIMGLQLTILSLFGLFGLSGIVVNNAIILVAFYN---QQRQ 954

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
              +   D ++++  + +   + TS+     + P+          +   A  +AFG+ ++ 
Sbjct: 955  KGLDITDALNEAAVQRVRAVLLTSLTTIGGLTPLLFETSLQAQFLIPMATSIAFGLGLST 1014

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
               + +   +L ++  +R   A
Sbjct: 1015 FLVLLVIPALLSWVEQFREWRA 1036



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/118 (15%), Positives = 43/118 (36%), Gaps = 6/118 (5%)

Query: 704 ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               LG   L G   N+ ++ A++  +G  V+D +VV +                   + 
Sbjct: 367 FLAALGVLWLIGGSINMISLFALIMALGVIVDDAIVVGE---DADAHARMGEQSIYAAEG 423

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAP 818
           +    +   + +S+    + +P+ V GG    ++G   + M   ++ +      +   
Sbjct: 424 AAKRMVWPVLASSLTTVAAFMPLLVVGGVIGNILGDIPVVMICVLIASLLECFVVLPA 481


>gi|160940199|ref|ZP_02087544.1| hypothetical protein CLOBOL_05088 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436779|gb|EDP14546.1| hypothetical protein CLOBOL_05088 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1044

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/655 (10%), Positives = 182/655 (27%), Gaps = 44/655 (6%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
                + +++C + L+      +  + ++  P       + L                 +
Sbjct: 8   VLKRPVTTIMCILCLIFFGYTSVTGATMELTPEMDMPMLLVL---------TNYSGANPE 58

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            VN  +    ++    L        +  +  + + L +      +   D +   +  V +
Sbjct: 59  DVNDLITKEIEDQVGSLSGLKSITSASSEGMSMVMLEYEYGTDTDEAYDDLKKKIDLVTT 118

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +L  D    +++       +       +    +        +  + + +           
Sbjct: 119 QLPNDADTPVIMELNMDSAA----DITLAIDNASQNNLYSYVNNELVPEFEKIAVAADVS 174

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                   +  E  P ++ Q   + + ++      + S       V              
Sbjct: 175 IRGGSDEYVKIEVIPEKVSQYKVSISSIASDIQAADLSYPAGDTQV-------------- 220

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
                 G      +      T + +  I          +     N+              
Sbjct: 221 ------GSQELSVSTRMTYNTVENLKKIPLTVPSGDTVYLEDVANVYTTTDSSSSIARYD 274

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                    S +   +            + L A    + + +  + +  + + S      
Sbjct: 275 GNDTISVSISKQQSATAMELSNQVKKTISRLMAEDPDLNIIL-VDDSSDSIMESLMSVVE 333

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           T  +   + +I++++     K  L+   SI ++++    L+ L+G +L + +++ + LG+
Sbjct: 334 TLIMAVVISMIIIWLFFGDIKASLIVGSSIPVSILAAFILMDLMGFSLNVITMSALTLGV 393

Query: 425 GLAVDSNILVNERIREENRKNQS------VFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G+ VD++I+V E        ++          +   G     +++     T  +  + L 
Sbjct: 394 GMMVDNSIVVLESCFRATASSEKKAGLVEFMDNALEGTRVVGASVLGGTATTCVVFIPLA 453

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFFLI 534
           F     G   +    T+   +  S+ +A+++V    +     ++ K  +           
Sbjct: 454 FLEGMTGQLFKPLGFTIVFCLTASLISAVTVVPLCYMIYRPRERQKAPLSKPVYRLQDTY 513

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              + +   + +        L                G D  G I + V     +     
Sbjct: 514 RSAMRVILPKKKTVMFISIGLLMFSLFLATKLDMELMGSDDNGEITISVDTRPGLMTEKA 573

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
              L  ++   +   N +           +  DS      L+  +   T  V   
Sbjct: 574 DEILREIEGIIVQDSNLESYMTSYGGGGIRADDSATINAYLKDDRDMDTVDVVKM 628



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 92/259 (35%), Gaps = 9/259 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            L V +   V L  V +   +        +    +   +   + Q   ++  +  ++   
Sbjct: 243 PLTVPSGDTVYLEDVANVYTTTDSSSSIARYDGNDTISVSISKQQSATAMELSNQVKKTI 302

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            ++    P   I   +     I   L+   +  +I++ +  +I IW+ F     +L   +
Sbjct: 303 SRLMAEDPDLNIILVDDSSDSIMESLM-SVVETLIMAVVISMIIIWLFFGDIKASLIVGS 361

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ + I        L G   N+  ++A+   +G  V++ +VV +   +            
Sbjct: 362 SIPVSILAAFILMDLMGFSLNVITMSALTLGVGMMVDNSIVVLESCFRATASSEKKAGLV 421

Query: 759 DLIDKSINET---LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSS 812
           + +D ++  T       +  +    +  +P+A      G +       + F +  +  S+
Sbjct: 422 EFMDNALEGTRVVGASVLGGTATTCVVFIPLAFLEGMTGQLFKPLGFTIVFCLTASLISA 481

Query: 813 IFIAAPILLFIYDWRAKNA 831
           + +  P+   IY  R +  
Sbjct: 482 VTVV-PLCYMIYRPRERQK 499



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 31/237 (13%), Positives = 89/237 (37%), Gaps = 9/237 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            +++  +Q  D        +K + V +  +  +   +   + + ++ +T  +  S      
Sbjct: 777  TDVADVQFVDSPASISREDKEYKVTISGEYTELATRETKMRINQEVVTPNLTPSVSIGLN 836

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALF 714
             +   ++ E        +  +   + + +  +F+   ++   +TT+   +    G   L 
Sbjct: 837  SIDSSMNEE-FSALYKAIGTAVFLIFVVMAAQFESPRYSFMVMTTIPFSLIGAFGLLFLT 895

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              + ++ ++   L LIG  VN+ ++  D        Y  ++     + ++    +   + 
Sbjct: 896  NCKISMVSLIGFLMLIGTVVNNGILFVD----TANQYRETMDMDTALIEAGATRIRPILM 951

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
            T++   IS++PMA+     G++    AI    G+  +    + +       +   R 
Sbjct: 952  TTLTTIISMIPMAMAIGNSGNMTQGLAIVNIGGLTASTVMCLLMLPGYYKLMSGNRK 1008


>gi|152989422|ref|YP_001348077.1| RND divalent metal cation efflux transporter CzcA [Pseudomonas
           aeruginosa PA7]
 gi|150964580|gb|ABR86605.1| RND divalent metal cation efflux transporter CzcA [Pseudomonas
           aeruginosa PA7]
          Length = 1051

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/594 (10%), Positives = 149/594 (25%), Gaps = 58/594 (9%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  +G+         +  +D  P                 +++ ++++          
Sbjct: 16  VLLAVLGMAGIGIGSYQKLSIDAVPDI---------------TNVQVQINTAAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           V   +    + + + L          R   +++T+ F +         +V   L     +
Sbjct: 61  VEQRITYPVETVMAGLPGLQETRSLSRPGISQVTVIFEEGTDIYFARQQVNERLSTAREQ 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVISH------AIEQSMEIIRQRIDQIGISES 179
           L  D    L   +T      + +    +             +           Q+   + 
Sbjct: 121 LPEDISPTLGPISTGLGEIYLWTVEAEEGATKEDGSAYTPTDLRTIQDWIIRPQLRNVKG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         Q     DP +L     T   +    +  N +        R  +     
Sbjct: 181 VAEINTIGGYAKQFLIAPDPKKLAAYKLTLGDLQNAVLRNNENVGAGYIERRGEQLLIRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V+D  +I G                    I    +            +     +   
Sbjct: 241 PGQVKDMDDIRG--------------------IIVSNVDGVPIRIRDVAEVSLGKELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +  G     +          I           + 
Sbjct: 281 AATENGREVVLGTVFMLIGENSREVAQAVGQRLEEINRTLPKGVKAITVYDRTTLVDKAV 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+ VLF+ +   +  L+    I L+++ T   +     +  L S+  
Sbjct: 341 ATVKKNLVEGAALVIAVLFLFLGNIRAALITATIIPLSMLFTFTGMVSNKVSANLMSLGA 400

Query: 420 I-----VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF---SRAYSTIFDSNITAL 471
           +     V G  + V++ I      +  + +  +        F     A   +    I  +
Sbjct: 401 LDFGIIVDGAVVIVENAIRRLAHAQAHHGRQLTRAERFHEVFVASKEARRALVFGQIIIM 460

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           +  + +F      G      A T+  ++L +M  +++ V A +   I  K  +  +    
Sbjct: 461 VVYLPIFALTGVEGKMFHPMAFTVVTALLGAMILSVTFVPAAIALFITGKVKEEENFVMR 520

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                    +            G   +  +  +              +G   + 
Sbjct: 521 RARLAYEPALRWVLGHRALVVGGALGMVLLTGLVASRMGSEFIPSLSEGDFAMQ 574



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 52/128 (40%), Gaps = 8/128 (6%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+  GI  +++A    + L G +V + +V+   +R    L     S    +
Sbjct: 915  FALTGGVLALWLRGIPLSISAAVGFIALSGVAVLNGLVMISFIR---NLLQEGRSLDQAV 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
             +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 972  WEGAITRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTMLTLLVLPV 1031

Query: 819  ILLFIYDW 826
            +  + +  
Sbjct: 1032 LYRWTHGR 1039


>gi|325277153|ref|ZP_08142799.1| CzcA family heavy metal efflux protein [Pseudomonas sp. TJI-51]
 gi|324097730|gb|EGB95930.1| CzcA family heavy metal efflux protein [Pseudomonas sp. TJI-51]
          Length = 1049

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/598 (11%), Positives = 154/598 (25%), Gaps = 48/598 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L    I  +GL       L  + LD  P       I                  
Sbjct: 12  NRFLVLLATLFITALGLWS-----LRNTPLDALPDLSDTQVI---------IRTSFPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L   
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGYSFFGDSFVYVLFEDDTDLYWARSRVLEYLNQA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       L    T                     +           ++    +  +
Sbjct: 118 QERLPEGVTTTLGPDATGVGWIYQY-ALVDRSGQHDLAQLRALQDWFLKYELKSLPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L     T  ++       N    G +  +            
Sbjct: 177 VATLGGMVKQYQVLLDPQKLVAYGVTQQEVEAALKSANQETGGAILELAEREYMVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E   +                     V +     G              P        +
Sbjct: 237 LESLADFRN------------------VPLRASASGVPVLLGQVATIQLGPEMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI         L+         +           +    
Sbjct: 279 DGQGEVVGGVVILRSGKNARDTIAAVKTKLDSLKGSLPAGVEVVTTYDRSQLIDRAIDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  ++ L +++   ++   G    + S+ GI +
Sbjct: 339 SYKLLEEFAVVALVCLIFLWHLRSSLVAIITLPLGILMAFIVMRYQGVNANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            IG  VD+ +++ E   +              + ++ +  +    +     +F S +   
Sbjct: 399 AIGAMVDAAVVMIENAHKHIEAWKARHPGEPLQGEAHWRVIGEAAAEVGPALFFSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++  +   +I++V  +M + IR            
Sbjct: 459 LSFLPVFTLEAQEGRLFGPLAFTKTYAMAAAAGLSITLVPVLMGYWIRGHIPSEQQNPLN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    +    +      + +++L  + S+  L   G  +      G  L + + 
Sbjct: 519 RWLIGAYRPVLEWVLAWPKVTLALALLVFLSSLWPLSRLGGEFLPPMDEGDLLYMPSA 576



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 84/288 (29%), Gaps = 17/288 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +   A + + L  V     +     +  +N     
Sbjct: 763  LARFPINLRYPKEWRDSPQALRRMPILTQAGQQITLGTVAQVSLTEGPPMLRSENGRLSG 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V ++ +   S  +     + ++   +     +         + +  L       V+ 
Sbjct: 823  WVYVDVRGRDLASTVRELQQRVAEQVQLDAGMTVSYSGQFEFLERANARLAW-----VVP 877

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYS 733
            + + ++  +       F    +    L    + G      FG   ++      + L G S
Sbjct: 878  ATLLIIFVLLYLTFSRFGEALLIMATLPFALSGGIWLLYWFGFNLSVATGVGFIALAGVS 937

Query: 734  VNDKVVVYDRMRKNMK----LYTTSIS-FRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
                V++   ++           +      + I +     +   V T       +LP+  
Sbjct: 938  AEFGVIMLLYLKNAWHARMDAGRSGDPALLEAIREGAVLRVRPKVMTVAVIIAGLLPILW 997

Query: 789  WGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             GG    V+   A PM  G++ A   S+ +      +    R +  ++
Sbjct: 998  GGGAGSEVMKRIAAPMVGGMITAPLMSMLVLPA--AYWLMRRQRTQKV 1043



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/209 (17%), Positives = 74/209 (35%), Gaps = 14/209 (6%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A    L+ +K  +   V + T  +   +  +    L  K +    + A+  LI++W
Sbjct: 299 DTIAAVKTKLDSLKGSLPAGVEVVTTYDRSQLIDRAIDNLSYKLLEEFAVVALVCLIFLW 358

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                  +L AI TL L I          G+  N+ ++  +   IG  V+  VV+ +   
Sbjct: 359 ---HLRSSLVAIITLPLGILMAFIVMRYQGVNANIMSLGGIAIAIGAMVDAAVVMIENAH 415

Query: 746 ---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
              +  K        +      +I ++  E      ++ +   +S LP+          F
Sbjct: 416 KHIEAWKARHPGEPLQGEAHWRVIGEAAAEVGPALFFSLLIITLSFLPVFTLEAQEGRLF 475

Query: 798 ---AIPMAFGIVVAASSSIFIAAPILLFI 823
              A    + +  AA  SI +   ++ + 
Sbjct: 476 GPLAFTKTYAMAAAAGLSITLVPVLMGYW 504


>gi|308172557|ref|YP_003919262.1| swarming motility protein SwrC [Bacillus amyloliquefaciens DSM 7]
 gi|307605421|emb|CBI41792.1| swarming motility protein SwrC [Bacillus amyloliquefaciens DSM 7]
 gi|328552322|gb|AEB22814.1| swarming motility protein SwrC [Bacillus amyloliquefaciens TA208]
 gi|328910666|gb|AEB62262.1| swarming motility protein SwrC [Bacillus amyloliquefaciens LL3]
          Length = 1047

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 75/698 (10%), Positives = 194/698 (27%), Gaps = 52/698 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + V L ++I  +  L A  N   +S+ D     +               +       
Sbjct: 10  KNKFAVWLMTIIVTVAGLYAGLNMKQESIPDVNMPYLS-------------VNTTYPGAA 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++    L+   +   +  +  + + + +  ++  +    +V   L  V
Sbjct: 57  PSQVADDVTKPIEQAVQNLEGVNVVSSTSSENVSSVMIEYDYNKDMDKAKTEVAEALDNV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D KK  +   +     I+      D   S   + +  +    + ++   +    
Sbjct: 117 --SLPDDAKKPDISRYSINSFPILTLSVTSD--KSSLEDLTKNVENTLVPKLEGIQGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S +   Q+       ++++       +       + +    ++       S      
Sbjct: 173 VQVSGQQEEQVEFSFKDKKMKEYGLDEDTVKKVIQGSDVNTPLGLYTFGNKEKSVVVNGN 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG----------- 291
           +    ++  + +   +++            S  +  A +  + +                
Sbjct: 233 ITSIKDLKDMRIPVTSSSAAQGQAGGAGAASAADAQAAQQAQQSASAGVPTVKLSDIADI 292

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
           K +                         +     +         +               
Sbjct: 293 KDVKKAESISRTNGKDSIGINIVKANDANTVEVADAIKDELNQYKKDH-KGFKYSSTLDM 351

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 S           A   ++++ + +   K  +++  SI L++++ L +L+ L  T
Sbjct: 352 AKPITESVDTMLSKAIFGAIFAVVIILLFLRDIKSTMISIVSIPLSLLIALLVLNQLDVT 411

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTIFDSNI 468
           L + ++  + + IG  VD +I+V E I    R           +       +  I  S I
Sbjct: 412 LNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKQLVREATKEMFKPIMSSTI 471

Query: 469 TALIATVVLFFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYK----KMK 521
             +   + L   GG        FA+T+  ++  S+  +I++V  +   + +       +K
Sbjct: 472 VTIAVFLPLAMVGGQIGELFMPFALTIVFALAASLLISITLVPMLAHSLFKKSLTGAPVK 531

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
           + +  P          +           +   ++       +               +QL
Sbjct: 532 AKEHKPGRLADFYKKVLNWSLSHKWITSIIAVLMLVGSLFLVPLIGASYLPAQADKTMQL 591

Query: 582 GVLANRPVDLSVV-------------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
                     S               R +++++Q    S     G  N  +       D+
Sbjct: 592 TYTPEPGETKSEAEKAAQKAEDMLLKRKHVDTVQYSLGSQSPLGGSSNGALFYVKYEEDT 651

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
               +  + V K+I +       +         + EL 
Sbjct: 652 PDFDKEKDNVLKEIKKTSSRGEWKTQNFSSSGNNNELT 689



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 86/238 (36%), Gaps = 6/238 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           S++  ++    +           + +     +      V + +K ++ +           
Sbjct: 287 SDIADIKDVKKAESISRTNGKDSIGINIVKANDANTVEVADAIKDELNQYKKDHKGFKYS 346

Query: 656 IVGP---KISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
                   I+  +       +  +  A++I +         + +I ++ L +   L    
Sbjct: 347 STLDMAKPITESVDTMLSKAIFGAIFAVVIILLFLRDIKSTMISIVSIPLSLLIALLVLN 406

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              +  N+  + A+   IG  V+D +VV + + + M+L    +  + L+ ++  E     
Sbjct: 407 QLDVTLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMRLKDEPLRGKQLVREATKEMFKPI 466

Query: 773 VYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           + +++      LP+A+ GG +      FA+ + F +  +   SI +   +   ++   
Sbjct: 467 MSSTIVTIAVFLPLAMVGGQIGELFMPFALTIVFALAASLLISITLVPMLAHSLFKKS 524



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 97/262 (37%), Gaps = 8/262 (3%)

Query: 574  DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
             +K   +L            V+    +      +          +         S   T+
Sbjct: 783  QYKSVKELEDKTITSPAGQEVKIGDVAKVKNGTTSDTISRRDGKVYADVTATVTSDNITK 842

Query: 634  VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
            V   V+KK+ ++     +            +   K  + ++ +   + + + I F    A
Sbjct: 843  VSSAVQKKVDKLDKPDNVSIDTGGVSADIADSFTKLGLAMLAAVAIVYLVLVITFGGALA 902

Query: 694  LGAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              AI  +L   +   L    + G   +L A+  +L LIG  V + +V+ DR+   +    
Sbjct: 903  PFAILFSLPFTVIGALVGLYVSGETVSLNAMIGMLMLIGIVVTNAIVLIDRV---IHKEA 959

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVA 808
              +S R+ + ++ +  L   + T++A   ++LP+A+    G  VI     + +  G++ +
Sbjct: 960  EGLSTREALLEAGSTRLRPILMTAIATIGALLPLALGFEGGSQVISKGLGVTVIGGLISS 1019

Query: 809  ASSSIFIAAPILLFIYDWRAKN 830
               ++ I   +   +  +R K 
Sbjct: 1020 TLLTLLIVPIVYEVLVKFRKKK 1041


>gi|167769469|ref|ZP_02441522.1| hypothetical protein ANACOL_00803 [Anaerotruncus colihominis DSM
           17241]
 gi|167668437|gb|EDS12567.1| hypothetical protein ANACOL_00803 [Anaerotruncus colihominis DSM
           17241]
          Length = 1027

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/672 (10%), Positives = 184/672 (27%), Gaps = 50/672 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++   M+   G+       +  +     P  M   R               E  
Sbjct: 9   KRPVAVLMCVLMLVVFGISSIFGMEMESTPEMSMPVFMVMTR--------------YEGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    +   S +           +  +  TL F  +   +   D++   L  
Sbjct: 55  SPEEVDNLVTDVVESALSSISDVKTMTSRSSEGSSMTTLEFDYNTDMDEKYDEINEALTR 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L        ++  +    SI+      +   +        I    + ++       
Sbjct: 115 LR--LPDSADDPTIMEMSMDSSSIMDLSIRANADDN----IYSYIENTVVPELEKISGVS 168

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      +  E     + Q   +   +S      + +                   
Sbjct: 169 SVDMRGGTREYVKVELREEEMEQYGLSMTDISSAIASADFTTTAGEIN------------ 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                    G             T++ +  I                 +      + +  
Sbjct: 217 --------RGNISLTLEGGVSYDTYESLETIPISLASGDIIHISDVATVSMAEEQMNNIS 268

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                       S     +              L    L + + I    +      +   
Sbjct: 269 RYNGMDNISLSISKNQSANTIEICNEISEKVDELNGQGLGLAIEI-TNNSGETIYENIMN 327

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      L ++VL + +   +  L+   S+ L+V   L L++  G T+ + S+ G+V
Sbjct: 328 VVSTLLQGLVLSMLVLVVFLGDWRAALIVATSMPLSVFAALVLMAAFGMTINILSLGGLV 387

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +GIG+ VD++I+V +   +     ++   +   G +     +  S IT ++  + +    
Sbjct: 388 VGIGMMVDNSIVVIDSCFKMQDGIRTYDDAAIAGANLVNGAVIASTITTIVVFLPIALMD 447

Query: 482 GGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIR-YKKMKSIDINPLSRFFLIPDC 537
           G +    +    T+  S+  S+ +A+++V  +        K+  +++        L    
Sbjct: 448 GMSGQLFKDVGFTIVFSLTASLISALTLVPLLFAKFRPVEKQTSAVNRGLHKLERLYGAL 507

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +               ++ +   +           +  +G I + V     +++      
Sbjct: 508 LDKALCHKLIVVAIAIVMLAGTFVMFTQIDSELMPMSDEGSISISVTTKTGLNIDETDQI 567

Query: 598 LES-----LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
           +        +  D+   +  G             D   QT     + ++ T  V  ++++
Sbjct: 568 MTQLEALVAEQPDVESYSMRGGGGSASITVTLKDDRSMQTDEFIALMRQETAYVENASVE 627

Query: 653 NTEIVGPKISRE 664
             E         
Sbjct: 628 VEERSSMSFGSR 639



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 97/240 (40%), Gaps = 6/240 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           +++ ++   +   Q    + ++ V +  Q     + + +   +  ++ ++     +   E
Sbjct: 759 TDVATIVYNNSPSQIQREDGDYQVSITGQTAIGQSDSSLSGQILARVLQMNLPEGVTVEE 818

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
               +   E        +  +   + + + I+F+   F+L  + ++   +T       L 
Sbjct: 819 GGSMRTMNEEFNAIYGALATAIFLVFVVMAIQFESLRFSLVVMFSVPFAMTGAFLALLLT 878

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            +  ++T++  ++ L+G  VN+ +V+ D    N+      ++  D +  S    L   + 
Sbjct: 879 DMSISMTSLIGLIMLVGIVVNNAIVLVD--YTNILRREQGLTAHDALVNSGRSRLRPILM 936

Query: 775 TSMAAFISVLPMAV-WGG--SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           T++   + +LP A  +GG   ++ S ++ +  G+ ++   ++ +   + L       +  
Sbjct: 937 TTLTTVLGLLPSAFGFGGNVEMMQSMSVVVIGGLTLSTLVTLILVPTVYLLFDGEDRRKK 996



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 95/257 (36%), Gaps = 6/257 (2%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            + + +   + +S V +   + +  +   +    +   L   + Q  +++     +    
Sbjct: 240 PISLASGDIIHISDVATVSMAEEQMNNISRYNGMDNISLSISKNQSANTIEICNEISEKV 299

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            ++        I+ T   G  I   ++      +    ++ML+ +     W  AL   T+
Sbjct: 300 DELNGQGLGLAIEITNNSGETIYENIMNVVSTLLQGLVLSMLVLVVFLGDWRAALIVATS 359

Query: 700 LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
           + L +   L   A FG+  N+ ++  ++  IG  V++ +VV D      K+     ++ D
Sbjct: 360 MPLSVFAALVLMAAFGMTINILSLGGLVVGIGMMVDNSIVVIDSC---FKMQDGIRTYDD 416

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIA 816
                 N   G  + +++   +  LP+A+     G +       + F +  +  S++ + 
Sbjct: 417 AAIAGANLVNGAVIASTITTIVVFLPIALMDGMSGQLFKDVGFTIVFSLTASLISALTLV 476

Query: 817 APILLFIYDWRAKNARI 833
             +         + + +
Sbjct: 477 PLLFAKFRPVEKQTSAV 493


>gi|124516154|gb|EAY57662.1| putative acriflavin resistance protein [Leptospirillum rubarum]
          Length = 1070

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/709 (9%), Positives = 189/709 (26%), Gaps = 51/709 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                  +   +  + L++     +P+  +D FPS      +            +     
Sbjct: 5   RLALKNRIAVFMAAMILVLVGARSVPEIAIDLFPSLAVPVLV---------VGTLYPGAS 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   + +  ++  + ++         R+  + I + F           +    +  +
Sbjct: 56  PKDVEQSITVPLEKTLATVENVDHIQSQSREGVSAIQVWFHWDEDLNAGLIQSVEKVSQI 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            ++L    ++  L+      + ++     +       +            Q+        
Sbjct: 116 LNQLPPGIQEPFLLKFDISNMPVI--NVVVSNPEMDGVHLYDLATNTIEPQLEEIPGVSG 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +   + Q+    +P ++  L  +   +       N                   +  
Sbjct: 174 APVNGGNIRQININVNPFQMYALNISPLAVVNAINKANFLLPSGDI-----------RIG 222

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D   ++   +             PV+  +  E      +      +        +  +
Sbjct: 223 TRDLNLLTNTQIVHRLLKT--VRKIPVLLRTSPEGEPVPVYVEDLATVQDGTESPSNIVL 280

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                        +   +    ++        LR    P     V          S    
Sbjct: 281 ANGAPAVYLGVHKQPGANTVRVVDDVYKSLPHLRG-LPPGTKVGVSFDQSTYIRDSLRSI 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    + + L +  +++ +      L+   +I L V+ +L  L   G TL + +  G+ L
Sbjct: 340 QHELVLGSVLAVGTVWIFLGEIMATLIVGIAIPLAVLASLIFLYFTGQTLNVFTFGGLAL 399

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFC-SLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
             G  +D +I+  E I       +     +L        + IF + +  ++    + F  
Sbjct: 400 ASGRLIDDSIVELENIHRHFSLGKKDRTVALLEAAREVATPIFSATLVTIVVLFPVLFLK 459

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM------------------ 520
             G       A+T+ L++  S   + ++   + +  +R K                    
Sbjct: 460 GVGKQLFSPMALTISLALFTSFLVSRTVTPLLCLRFLRSKTPPGRPGSEGEDRERPLSGC 519

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +           +      +     R   +  S + ++    L  +H +      +    
Sbjct: 520 RKPPRFERVFLRIEEGYDDLLQHVLRHKALVFSSVAAVFFFSLPLSHRIGTEFFPEPDES 579

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
              +  +    + +    E  +  +   +     K+  + L      S+A          
Sbjct: 580 QFTVYVKTAPGTRIEQTTEVARQVEQKIREVIPGKDIRIILINVGLRSIAGKGTNGTASV 639

Query: 641 KITEIVPLSTIQNTEIVGPK----ISRELIRKGIVGVIISAIAMLIYIW 685
                 P + +   ++V P      +  L+      +      + +Y  
Sbjct: 640 FTQNTGPDTGVVQVKLVTPDRRKRSAITLMDAARSALSGKFPGVGLYFA 688



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/215 (13%), Positives = 76/215 (35%), Gaps = 6/215 (2%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
              V              V   ++  I+          +        ++  +   V    +
Sbjct: 848  NRVITITANPVGRPLGDVAAEIRGLISRTSVPPGSHISLSGQVAQQKKAFQSMTVAAFSA 907

Query: 677  AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + + + +  +F+ +      + +L + +   L    L G  F+  A   ++  +G + +
Sbjct: 908  VLLVYMVLATQFRSFRDPFAILFSLPMCLPGILWMLFLSGTRFSTIAFMGIIMTVGIAAS 967

Query: 736  DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGS 792
            + V++ D +  N       +   + I +     L   + TS+A  + ++PMA+    G S
Sbjct: 968  NGVLLVDYI--NRLRVENGLPLEEAIRRGARTRLRPVLMTSLATILGLIPMALGLDVGSS 1025

Query: 793  VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                 A  +  G+ +A   ++F+   +   +   R
Sbjct: 1026 NSAPLARTVIGGLGLATPFTLFLVPAVYEALNKNR 1060



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/159 (14%), Positives = 57/159 (35%), Gaps = 3/159 (1%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+ S +A+        +    L     + L +  +L F    G   N+     +    G 
Sbjct: 344 VLGSVLAVGTVWIFLGEIMATLIVGIAIPLAVLASLIFLYFTGQTLNVFTFGGLALASGR 403

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++D +V  + + ++  L     +    + ++  E        ++   + + P+    G 
Sbjct: 404 LIDDSIVELENIHRHFSLGKKDRTV--ALLEAAREVATPIFSATLVTIVVLFPVLFLKGV 461

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               F+ PMA  I +A  +S  ++  +   +     ++ 
Sbjct: 462 GKQLFS-PMALTISLALFTSFLVSRTVTPLLCLRFLRSK 499


>gi|183980473|ref|YP_001848764.1| transmembrane transport protein MmpL11 [Mycobacterium marinum M]
 gi|183173799|gb|ACC38909.1| conserved transmembrane transport protein MmpL11 [Mycobacterium
           marinum M]
          Length = 1005

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 71/521 (13%), Positives = 167/521 (32%), Gaps = 66/521 (12%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL---PSIAGIVLGI 424
               ++LIVL  +        +        V++T+ L+ LL    T+    +    + GI
Sbjct: 184 WNLPIILIVLLAVFGSLTAAAIPLALGICTVVVTMGLVYLLSMHTTMSVFVTSTVSMFGI 243

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            LAVD ++ +  R REE R  +    ++D   + +   +  S +T + +   ++     A
Sbjct: 244 ALAVDYSLFILMRFREELRSGRQPQEAVDAAMATSGLAVVLSGMTVVASLSGIYLINTPA 303

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS---IDINPLSRFFLIPDCIAIQ 541
           +R  A    L++ ++M T+ ++  A++    R    +S                    + 
Sbjct: 304 LRSMATGAILAVAVAMLTSATLTPAVLATFARAAAKRSALLHWSRRPESTQSRFWTRWVG 363

Query: 542 FMRARFWGVGISILFSICSICLLFTHG------------------------LNYGIDFKG 577
           ++  R W   +S    +  +                                  G    G
Sbjct: 364 WVMHRPWITALSASVVLLLMAAPAASMVLGNSLLRQFDSSHEIRAGVSAAAQALGPGALG 423

Query: 578 GIQLGVLANR--------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
            +Q+ +               +  VR  +               E N    L        
Sbjct: 424 PVQVLIKFPDGGASTPAHSQTVGAVRQRMAQGPNVTTVAPPKFAEDNDSALLSAVLSVDP 483

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYIWI 686
                   V    +E+  ++     ++ G     +     +     ++++ +A++ ++ +
Sbjct: 484 EDMGARHTVDWMRSELPQVAGGAQVDVGGSTALIKDFDDRVSATEPLVLAFVALIAFVML 543

Query: 687 R---FKWYFALGAITTLILDITKT---------------LGFFALFGIEFNLTAVAAVLT 728
                    AL  +   +L +                  LGF  L  I+  +  +  +  
Sbjct: 544 LISIHSVLLALKGVLMTLLSVAAAYGSLVMVFQWGWGERLGFPQLTSIDSTVPPL-VLAM 602

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             G S++ ++ +  R+R+    +  +   RD +   +  T  R++ ++    I+V     
Sbjct: 603 TFGLSMDYEIFLLTRIRE---RFLHTGRTRDAVAYGV-STSARTITSAALIMIAVFCGFA 658

Query: 789 W-GGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
           + G  ++    +  A  I V      + +   ++     W 
Sbjct: 659 FAGMPLVAEIGVACAVAIAVDATIVRLIMVPALMAMFSQWN 699


>gi|237726667|ref|ZP_04557148.1| drug efflux protein [Bacteroides sp. D4]
 gi|229435193|gb|EEO45270.1| drug efflux protein [Bacteroides dorei 5_1_36/D4]
          Length = 1058

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/594 (10%), Positives = 167/594 (28%), Gaps = 49/594 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N   L     ++  + L +     +P   +   PS         GL         +  
Sbjct: 1   MSNPRNLSSFTLIVTFVCLSLIGVVLVPLLPVKLAPSRTLP-----GLT----VSFSMPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +    +   +    + + + +K       +       I+L        +    +V+  ++
Sbjct: 52  NSSRVIEAEVTSKLEAMMARVKGIRKVNSTSDNGSGSISLELDKHADIDVTRFEVSTIIR 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L        + T    + +            ++ I             +G  +  
Sbjct: 112 QTWPQLPEGVSYPQISTRRSDDKASRPFITYTLNAPANPILIQQYAEENIKPVLGQLKGI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +    ++   E D  +L +L  T   +          +   +  +    +     
Sbjct: 172 YKVELNGATPMEWQLEYDSDQLSRLGITLQAVQRAINRHYEKEFLGICSIEKGAEGR--- 228

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                        +     + + +       I                 +          
Sbjct: 229 -----------EWIRLVRTSTEKEMEFEPGAIQLQAEDGTMVTLDKLIKVRHVEERPQSY 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + +   +          L   L+    P     +             
Sbjct: 278 YRINGLNSVYLYITAEETANQLNLSGEVKHLMGELQQKMPPGYEVHISYDATEYIQKELD 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   ++L+ + +I    ++  +   S+ +N+ + + L    G  + L S+AGI
Sbjct: 338 KIYFRTGLTVLILLLFVALITRNLRYLFLIVTSLAVNISVAVILYYAFGLEMQLYSLAGI 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + + L +D+ I++ + I             L     +A+ ++  + +T + A V++FF 
Sbjct: 398 TISLNLVIDNTIVMTDHI-------------LHRRNLKAFVSVLAATLTTIGALVIIFFL 444

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----------MKSIDINP 527
                  ++ FA  + +++ +S+F A+  V +M+  I   KK            +     
Sbjct: 445 DEKIRLNLQDFAAVVIINLAVSLFVALFFVPSMIDKIGLEKKKRRKRRRFLLRPTFMKRL 504

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              F      +     R R     + +L     + +L       G   +   ++
Sbjct: 505 TVYFTRFYQGVIYYLCRFRVIACLLLLLGFGLPVFMLPEKMEGEGKWVEYYNKV 558



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 73/253 (28%), Gaps = 14/253 (5%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V     ++    +    +      S Q    E               ++     + K   
Sbjct: 812  VNIPFFINGRSYKLADFATVQKGQSPQKVAKENQQYRLCLQYEYIGSSEQGKKLLKKDLE 871

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRF-KWYFALGAITTL 700
                 L      E      S          +++  IA++ +   I F      L  I  +
Sbjct: 872  EFNKVLPMGYTAENDQDYWSWNKKDNKQYALLLIVIAIIFFTTAILFNSLKQPLAIIFVI 931

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS---F 757
             +        F LFG+ F+    A+ + L G +VN  + + +                  
Sbjct: 932  PISYIGVFLTFYLFGLNFDQGGFASFVLLCGITVNASIYILN----EYNAIRKRYPLLLP 987

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS---IF 814
                 K+ N  +     T ++  +  +P  V  G    +F  P+A G +     S   IF
Sbjct: 988  ARAFTKAWNSKIMPIFLTVVSTILGFIPFMV--GDGKEAFWFPLAAGTIGGLVMSILGIF 1045

Query: 815  IAAPILLFIYDWR 827
            +  PI       R
Sbjct: 1046 LFLPIFSLKKQKR 1058



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 90/250 (36%), Gaps = 24/250 (9%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G IQL       V L  +       +     ++       +L     +  + +  +  ++
Sbjct: 247 GAIQLQAEDGTMVTLDKLIKVRHVEERPQSYYRINGLNSVYLYITAEETANQLNLSGEVK 306

Query: 637 MVKKKITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            +  ++ + +P    +  +      I +EL +      +   I +L    I     +   
Sbjct: 307 HLMGELQQKMPPGYEVHISYDATEYIQKELDKIYFRTGLTVLILLLFVALITRNLRYLFL 366

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTT 753
            +T+L ++I+  +  +  FG+E  L ++A +   +   +++ +V+ D +  R+N+K    
Sbjct: 367 IVTSLAVNISVAVILYYAFGLEMQLYSLAGITISLNLVIDNTIVMTDHILHRRNLK---- 422

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
                              +  ++    +++ +      +   +  FA  +   + V+  
Sbjct: 423 --------------AFVSVLAATLTTIGALVIIFFLDEKIRLNLQDFAAVVIINLAVSLF 468

Query: 811 SSIFIAAPIL 820
            ++F    ++
Sbjct: 469 VALFFVPSMI 478


>gi|157415290|ref|YP_001482546.1| AcrB/AcrD/AcrF family protein [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157386254|gb|ABV52569.1| putative integral membrane component of efflux system
           [Campylobacter jejuni subsp. jejuni 81116]
          Length = 1005

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 152/542 (28%), Gaps = 50/542 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++ +  +   GL+ A    +        P     ++++      G  + V     
Sbjct: 8   RPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIKITSKVN------GDLNFV----- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S +        +     +   + F   +  E  A+ V   +  +
Sbjct: 57  ----ESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAANDVRDKIGTL 112

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L   P+   + + +   IS+ L            ++   EI  +    +   E   +
Sbjct: 113 --SLPSKPEIEKISSDSGSAISLFLY-------SKDKLQLMREINDKIKPFLQRVEGVGK 163

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  E  P+ LR+       ++      N  +                 + 
Sbjct: 164 IEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYIIKGYFE 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  E+S + +                            F     NI           +
Sbjct: 224 ATNLEELSNLRIKT------------------------GVFLSDIANISSLYEDEKQSAL 259

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    I+       +L           +            S  
Sbjct: 260 YEGKEGVLLELGKITNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQV 319

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L L+++F+ +      L+A  +I  ++I T  ++ LLG  L   +   + L
Sbjct: 320 IFDMVLGIFLTLVIVFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTL 379

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLD--MGFSRAYSTIFDSNITALIATVVLFFF 480
            IG+ +D  I+V E I ++ +    +  +         +  +I    +   I    +   
Sbjct: 380 SIGIFIDDAIVVIENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSI 439

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G       I++   I+IS   ++ ++ ++    +  K+ K  +        +      +
Sbjct: 440 SGLFFNALGISVASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENL 499

Query: 541 QF 542
            +
Sbjct: 500 LY 501



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 7/200 (3%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                      V   +     +I    +I         I + L +     V+   + ++I
Sbjct: 274 TNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVI 333

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                      L A   +   I  T     L G + N     A+   IG  ++D +VV  
Sbjct: 334 VFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI- 392

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +N+     +          INE     +  S+      +P++      G    +  I
Sbjct: 393 ---ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGI 449

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +A GIV++   S+F+   I
Sbjct: 450 SVASGIVISFLVSVFLIPSI 469



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 93/256 (36%), Gaps = 9/256 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +++  S++                KN  V++     D         ++    
Sbjct: 747 ISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQKLLLDNMD 806

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             +    ++         +  E ++   + V ++ + + + +   ++ +   L  + T+ 
Sbjct: 807 KILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFILPLIIMITMP 866

Query: 702 LDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           L     ++G F + G  F+L  + A++ L G    + +++ D      K     +     
Sbjct: 867 LAFGGASIGLF-ITGHNFSLFVLIAIILLFGMVGKNAILLVDVAN---KKCHEGLDPDKA 922

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  +    L   + T+ A   ++LP+A+    G       AI + FG++ +   ++ +  
Sbjct: 923 LLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLISSTLLTLLVVP 982

Query: 818 PILLFIYDWRAKNARI 833
            +  F +   +K  +I
Sbjct: 983 ALFKFCFKLDSKLRKI 998


>gi|288922388|ref|ZP_06416578.1| MMPL domain protein [Frankia sp. EUN1f]
 gi|288346259|gb|EFC80598.1| MMPL domain protein [Frankia sp. EUN1f]
          Length = 745

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/510 (14%), Positives = 160/510 (31%), Gaps = 62/510 (12%)

Query: 374 LIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNIL 433
           L V F  +L     L+   +     +  +  +S L +     ++   ++G+G+ +D  + 
Sbjct: 186 LFVAFGSLLAVTLPLITALAALGVGLNLIIQVSHLTSVAEFSTMLATLIGLGVGIDYALF 245

Query: 434 VNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMG 493
           +  R R   R  +S   +     + +   +  +  T  IA + LF  G   + G A+   
Sbjct: 246 IVNRHRIGLRAGRSPEEAAVNAVNTSGRAVLFAGATVCIALLGLFALGVTFLYGVALAAA 305

Query: 494 LSILISMFTAISIVRAMMIFIIR----YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWG 549
           L++ ++M ++++++ A++ F  +     ++ + I  +                   R   
Sbjct: 306 LTVAMTMLSSVTLLPALLGFYGQKVLSRRERRRIAEHGPEPEAPSGFWWRWAKGVERRPA 365

Query: 550 VGISILFSICSICLLFTHGLN-------------------------YGIDFKGGIQLGVL 584
           V   +     ++  +    L                          +G  F G   L   
Sbjct: 366 VLAVLSAVAIAVIAIPFFSLRLGSSDLGNGSEDKTTKRGYDLLAEGFGPGFNGPFSLVTD 425

Query: 585 ANRPVDLSVVRSNLESL---QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            +    L  +   + +           +               P  S       +++ + 
Sbjct: 426 LSSGAGLQALNQAVAAARDTPGVASVTEPRQSPNGRAAIATLYPTSSPQSPETAKLLDRL 485

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRK----------GIVGVIISAIAMLIYIWIRFKWY 691
             +++P +T      V       +               +G+++    +L+ +  R    
Sbjct: 486 RDDVIPTATAGAAAPVYVGGITAIFEDFAGVLSDKLPLFIGIVVVLAFILLVVVFR-SLL 544

Query: 692 FALGAITTLILDITKTLGFFA----------LFGIEFNLT----AVAAVLTLIGYSVNDK 737
             L A    +L +    G             LFG+          V     L G S++ +
Sbjct: 545 IPLTASVMNLLAVGAAFGAVVAVFQWGWLSDLFGLSPGPIEAFLPVMLFAILFGLSMDYE 604

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS-VIGS 796
           V +  RM +           R  +     ET GR +  + A    V    + G   VI  
Sbjct: 605 VFLVSRMHEEWTA---RRDNRIAVSLGQAET-GRVISAAGAIMTLVFAAFILGDERVIKL 660

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           F + +A  I + A     I  P L+ ++  
Sbjct: 661 FGLGLALAIAIDAFVIRTILVPALMHLFGR 690



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 57/151 (37%), Gaps = 13/151 (8%)

Query: 693 ALGAITTLILDITKTLGFFALFGIEFN-------LTAVAAVLTLIGYSVNDKVVVYDRMR 745
           +L A+T  ++     LG      I+ +        + + A L  +G  ++  + + +R R
Sbjct: 192 SLLAVTLPLITALAALGVGLNLIIQVSHLTSVAEFSTMLATLIGLGVGIDYALFIVNRHR 251

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
                     S  +    ++N +    ++      I++L +   G + +   A+  A  +
Sbjct: 252 ---IGLRAGRSPEEAAVNAVNTSGRAVLFAGATVCIALLGLFALGVTFLYGVALAAALTV 308

Query: 806 VVAASSSIFIAAPILLFIYDW---RAKNARI 833
            +   SS+ +   +L F       R +  RI
Sbjct: 309 AMTMLSSVTLLPALLGFYGQKVLSRRERRRI 339


>gi|228907636|ref|ZP_04071493.1| hypothetical protein bthur0013_18030 [Bacillus thuringiensis IBL
           200]
 gi|228852128|gb|EEM96925.1| hypothetical protein bthur0013_18030 [Bacillus thuringiensis IBL
           200]
          Length = 700

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/563 (11%), Positives = 177/563 (31%), Gaps = 65/563 (11%)

Query: 324 TIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLY 383
             E +          +    +             S++        V    +++ F  V +
Sbjct: 103 VTEASKDKILDSIETTRDAGIQTELSGGDVTFSDSETSGMTEIVGVLVAFVVLAFTFVSF 162

Query: 384 GKWGLVADFSIFLNVILTLALLSLLGAT--LTLPSIAGIVLGIGLAVDSNILVNERIREE 441
              GL    +I    I  L ++         ++      +LG+ + +D  + +  R R++
Sbjct: 163 LVAGLPILTAIIGLAIGMLGIIIGTNYVEIQSVSLSLAAMLGLAVGIDYALFIINRFRQQ 222

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
             +  SV  S+ +    A S +  + +T +I  + L       +    ++   ++L ++ 
Sbjct: 223 LAQGDSVPESVAIATGTAGSAVIFAGLTVIIGLLGLSVTKIPFLTAMGVSAAFTVLAAVL 282

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR---ARFWGVGISILFSI 558
            ++ I+ A++  +         +                        R   +       +
Sbjct: 283 VSVIILPAILGLVGHKIAPSKQNRFLQKMTGAGKKHAGSNKWGEFVIRRPLIVTIFAIGL 342

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPV----------------------------- 589
            ++  +    +N G+   G  +      R                               
Sbjct: 343 LAVISIPFFHMNLGLPSDGTTKSTETTERRAYDLLTEAYGEGFHASLMVVAKSEEATAET 402

Query: 590 -----DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
                 ++    NL  ++    +     G+   +        D      +++ ++ K  +
Sbjct: 403 QNAMNTIAKELGNLPDVKSVTPAIPGPSGKIYMISITPKTGPDDTKTKDLVKAIRDKSNQ 462

Query: 645 IVPLSTIQNTEIVGPKISRELIRKG------IVGVIISAIAMLIYIWIRFKWYFALGAIT 698
               + I+        ++ ++++K          +I+    +L+ +  R      L A+ 
Sbjct: 463 AEKKNEIELMVTGTAAMNIDIVQKLSDALPVFAALIVGLAYVLLVLVFR-SLLIPLKAVL 521

Query: 699 TLILDITKTLGFFA----------LFGIEFNLTAVA-----AVLTLIGYSVNDKVVVYDR 743
             +L +  TLG             +FG       +A      +  L G +++ +V +  +
Sbjct: 522 GFLLSLGATLGAVVFFVQDGHFQNIFGFPAAGPILAFLPVILIGILFGLAMDYEVFLVSK 581

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
           MR+   +YT +   +  I + + E+    V   +      +   +   ++I S  + + F
Sbjct: 582 MRE---VYTHTGDPKRAIVEGMRESGRVVVAAGLIMMSVFIGFMLAPDTIIKSIGMALTF 638

Query: 804 GIVVAAS-SSIFIAAPILLFIYD 825
           G+   A    + I   +++ + +
Sbjct: 639 GVFFDAFIVRMTIVPAVMILMGN 661



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 82/244 (33%), Gaps = 12/244 (4%)

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           V   + + +        +  QN   +K     +      +   T   +       E    
Sbjct: 61  VLEEIKKDSAVDSVAAPMQLQNLSEDKTIGYAVVTYKVKAEKVTEASKDKILDSIETTRD 120

Query: 649 STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFA----LGAITTLILD 703
           + IQ     G     +    G+  ++   +A  + +   F  +  A    L AI  L + 
Sbjct: 121 AGIQTELSGGDVTFSDSETSGMTEIVGVLVA-FVVLAFTFVSFLVAGLPILTAIIGLAIG 179

Query: 704 IT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
           +    +G   +     +L+  A +   +G  ++  + + +R R+ +       S  + + 
Sbjct: 180 MLGIIIGTNYVEIQSVSLSLAAMLGLAVG--IDYALFIINRFRQQLAQ---GDSVPESVA 234

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            +        ++  +   I +L ++V     + +  +  AF ++ A   S+ I   IL  
Sbjct: 235 IATGTAGSAVIFAGLTVIIGLLGLSVTKIPFLTAMGVSAAFTVLAAVLVSVIILPAILGL 294

Query: 823 IYDW 826
           +   
Sbjct: 295 VGHK 298


>gi|260771189|ref|ZP_05880116.1| putative multidrug resistance protein [Vibrio furnissii CIP 102972]
 gi|260613786|gb|EEX38978.1| putative multidrug resistance protein [Vibrio furnissii CIP 102972]
          Length = 1026

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/522 (11%), Positives = 140/522 (26%), Gaps = 43/522 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +    +L  ++  +    A          +  P                   +  +    
Sbjct: 10  SRARTMLTLLVFILA---AGVLTYLTIPKESSPDITIPIIY---------VSVTHQGISP 57

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D     +    ++    ++       +  +    I L F            V   +    
Sbjct: 58  DDAERLIARPLEQELRAIEGVKEMTANAAEGYASIVLEFNVGVDLTKAMADVREAVDLAK 117

Query: 124 SKLNVDPKKNLLVTTT-EKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            KL  D  + ++   T   E  ++             ++ +    R   D++      ++
Sbjct: 118 PKLPADSDEPIVNEVTLASEQPVLSVVLYGTVPERGIVQIA----RALRDKLESYRQVLE 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    DP  +         +     L N           + R S     +
Sbjct: 174 VDIAGDREDIVEIVADPLLMESYGLDQGDIYNLIALNNRVVAAGFVDTGYGRFSVKVPSV 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                ++                    +++     G R         + +          
Sbjct: 234 FNSLKDV--------------------LELPVKVEGKRVITFGDIATVRRAFRDPESFAR 273

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILA--AMLRAGSLPIKLNIVEERNVGADLGSDS 360
           L            +A  +   T+     +   A  R       L               +
Sbjct: 274 LDGKSAVVLDVKKRAGENIIDTVALVKTVMREAQKREDWPNNLLVKYTWDESKDVQLMLN 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +        LV+IV+  I+       +   SI  + +  L +LS+ G T+ +  +  +
Sbjct: 334 DLQNNILSAILLVVIVIIAILGVRT-AFLVGVSIPGSFLTGLLVLSVFGLTVNIVVLFSL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++ +G+ VD  I+V E      ++      +      R    I  S  T L A   L F+
Sbjct: 393 IMAVGMLVDGAIVVTEFADRRMQEGMPRSEAYRDAAKRMAWPITASTATTLAAFAPLLFW 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
               G  ++   +T+  ++  S+  A+  V  +   + R + 
Sbjct: 453 PDITGEFMKFLPLTLIATLAASLVMALLFVPVLGSLMGRPQH 494



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 29/174 (16%), Positives = 69/174 (39%), Gaps = 21/174 (12%)

Query: 672  GVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAV-AAVLTL 729
              +++ +AM + +  +F  +Y A   ++ ++           +F   F +      V+ L
Sbjct: 857  AFVVALVAMALILITQFNSFYQAFLILSAVLFSTVGVFAGLLIFHKPFGVIMSGIGVIAL 916

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
             G  VN+ +V+ D      +L    ++ ++ I ++  + L   + T++   + +LPM + 
Sbjct: 917  AGIVVNNNIVLIDTYN---QLRKRGLNPQEAILRTGVQRLRPVMLTTITTILGLLPMVLE 973

Query: 789  -----------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                       +G          A  +A G+  A   ++ +  P LL +   + 
Sbjct: 974  MNIDLIHQKIEFGAPSTQWWSQLATAVAGGLAFATLLTL-VLTPCLLMLGREKK 1026



 Score = 44.7 bits (103), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/242 (9%), Positives = 76/242 (31%), Gaps = 13/242 (5%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           D++ VR      +             +   R      D+VA  + +    +K  +     
Sbjct: 257 DIATVRRAFRDPESFARLDGKSAVVLDVKKRAGENIIDTVALVKTVMREAQKREDWPNNL 316

Query: 650 TIQNTEIVGPKIS---RELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
            ++ T      +     +L    +  +++  I ++  + +R  +        ++      
Sbjct: 317 LVKYTWDESKDVQLMLNDLQNNILSAILLVVIVIIAILGVRTAFLVG----VSIPGSFLT 372

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            L   ++FG+  N+  + +++  +G  V+  +VV +      +     +   +    +  
Sbjct: 373 GLLVLSVFGLTVNIVVLFSLIMAVGMLVDGAIVVTEFA---DRRMQEGMPRSEAYRDAAK 429

Query: 767 ETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                   ++     +  P+  W    G  +    + +   +  +   ++     +   +
Sbjct: 430 RMAWPITASTATTLAAFAPLLFWPDITGEFMKFLPLTLIATLAASLVMALLFVPVLGSLM 489

Query: 824 YD 825
             
Sbjct: 490 GR 491


>gi|227328641|ref|ZP_03832665.1| cation efflux system protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 1045

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/525 (11%), Positives = 131/525 (24%), Gaps = 43/525 (8%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           L ++ LD  P       I           +         V   +          +     
Sbjct: 31  LQKTPLDALPDLSDVQVI---------IRVSYPGKAPQVVENQVTYPLTTTMLSVPGAKT 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                      + + F D         +V  +L  V S L  D K +L    T       
Sbjct: 82  VRGFSMFGDAYVYVLFEDGTDPYWARSRVLEYLSQVQSSLPADAKTSLGPDATGVGWIYE 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                         +           ++       +      ++ Q     DP R+R   
Sbjct: 142 Y-ALVDRSGKYSLADLRGFQDWLLKYELKTVPDVAEVASVGGMVKQYQIVVDPERMRTQG 200

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T  ++       N    G +  +            ++   +                  
Sbjct: 201 ITHQQIVSAVQAANQENGGSVLELGEAEYMVRTTGYLKTAQD------------------ 242

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +     G     +        P        +     +   I   +   +   T+ 
Sbjct: 243 -FNQVVITTRNGIPVLLQDVATLREGPEMRRGIAELNGEGEVAGGIIVLRYGKNALNTLH 301

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
                   ++         +           +             +V I+  + + + + 
Sbjct: 302 AVKARLQEIQKSLPAGVEIVPTYDRSQLIEHAIDTLSFKLLEEFVVVAIICALFLFHFRS 361

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE------ 440
            LVA  S+ L ++    ++   G    + S+ GI + IG  VD+ I++ E + +      
Sbjct: 362 ALVAIISLPLGILGAFIIMRYQGVNANIMSLGGIAIAIGAMVDAAIVMIENMHKVIEQWR 421

Query: 441 -----ENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF---FFGGGAVRGFAITM 492
                +  +N   +   +         +F S +   ++ V +F      G      A T 
Sbjct: 422 HENPGKQPQNNEWWQLAERAAVEVGPALFCSLLIITLSFVPVFSLEAQEGRMFSPLAFTK 481

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
             ++ ++    I++V  +M + +R K                   
Sbjct: 482 TYAMAVAAGLGITLVPVLMGYFVRGKIPDEQANPINRWLIAAYHP 526



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 79/259 (30%), Gaps = 20/259 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       V L+ +     +     +  +N        V L+ +   S  +     + +
Sbjct: 786  PIVTANGSRVTLAELADIRVNEGPPMLKSENSRLSDWIYVDLRGRDLKSAVEDMQQAVAQ 845

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            +         +                 K  V V  + + + + +++ F +   AL  + 
Sbjct: 846  QVTLPEGVSLSWSGQFEYL----ERATEKMKVVVPFTLLIIFVLLYVTFNRIKDALLIMA 901

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---------DRMRKNMK 749
            TL   +   +    L G   ++      + L G S    V++           R+     
Sbjct: 902  TLPFALIGGVWLLYLLGYNLSVAGAVGFIALAGVSAEFGVIMLLYLNHAVEKHRV---AG 958

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIV 806
               +     D I +     +   + T       +LP+      G  ++   A PM  G+V
Sbjct: 959  QALSRQQLMDAIHEGAVLRVRPKMMTVATIMAGLLPIMWEGGSGSEIMQRIAAPMIGGMV 1018

Query: 807  VAASSSIFIAAPILLFIYD 825
             A   S+ +   + L ++ 
Sbjct: 1019 SAPLLSMLVIPAVYLLLHK 1037



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 90/288 (31%), Gaps = 15/288 (5%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
             + + +   L T      +       + VL      L         +   +   +   G
Sbjct: 227 AEYMVRTTGYLKTAQDFNQVVITTRNGIPVLLQDVATLREGPEMRRGIAELNGEGEVAGG 286

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                            + R+ E+ K     +  + T   ++++   I     +     V
Sbjct: 287 IIVLRYGKNALNTLHAVKARLQEIQKSLPAGVEIVPTYDRSQLIEHAIDTLSFKLLEEFV 346

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           +++ I  L      F +  AL AI +L L I          G+  N+ ++  +   IG  
Sbjct: 347 VVAIICAL----FLFHFRSALVAIISLPLGILGAFIIMRYQGVNANIMSLGGIAIAIGAM 402

Query: 734 VNDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVLP 785
           V+  +V+ + M    +  +        +      L +++  E       + +   +S +P
Sbjct: 403 VDAAIVMIENMHKVIEQWRHENPGKQPQNNEWWQLAERAAVEVGPALFCSLLIITLSFVP 462

Query: 786 MAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +          F   A    + + VAA   I +   ++ +    +  +
Sbjct: 463 VFSLEAQEGRMFSPLAFTKTYAMAVAAGLGITLVPVLMGYFVRGKIPD 510


>gi|218677999|ref|ZP_03525896.1| bifunctional preprotein translocase subunit SecD/SecF [Rhizobium
           etli CIAT 894]
          Length = 287

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 11/286 (3%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  + W  +L  +     ++IA PN L ++     P  +  +R++LGLDL+GGSH+VL++
Sbjct: 2   LHFSRWKTLLIWLAAFAAIVIAAPNLLSEAQRASLPGWLRHDRMTLGLDLQGGSHVVLKL 61

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +  D V   L+     +R+ L+  GI    +      +T+   D    +   D +     
Sbjct: 62  ERSDIVKDRLEEVVANVRNALRGAGIRYTGLTGNDQIVTVRITDPAETQKAVDLLKPLTA 121

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                      +       E ++S+ +S   I   ++ A  +S++I+ +RI   G     
Sbjct: 122 PDGRSGPEVALQQG----AEGQLSLQISDAGITADVASAQTRSLDIVSRRIAGFGYDNFL 177

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR------ 234
           ++  G+ RI++Q+ G  D  RL+ LL   AK+SFH +  + S +  + G   +       
Sbjct: 178 VRPDGADRIVVQVLGSVDAERLKNLLNQPAKLSFHLIDESMSGQEALNGRWPVTSEVLYS 237

Query: 235 -DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGA 279
            D     YLV+     +  ++       DP     V  +S    G 
Sbjct: 238 LDDPPVPYLVDRTAFATAGNMVHIEPLIDPADAGRVDRVSSRCGGH 283


>gi|332993319|gb|AEF03374.1| acriflavin resistance protein [Alteromonas sp. SN2]
          Length = 1040

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 79/673 (11%), Positives = 194/673 (28%), Gaps = 51/673 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +++  +   G +           L++FP                   +V+EV  
Sbjct: 37  RPVTIGMVFISMLLFGAVSG-----KLLPLEKFPGIDIPE-------------MVVEVPY 78

Query: 63  DDF----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
            D     +   +    +E  + +           + + ++ + F      +    +    
Sbjct: 79  PDATPVEIETMITRPVEEAIATMSGIKRLRARSYENKAEVIVEFDWDENLKAKGVEAREK 138

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +  +   L  D ++ ++      ++ I   + + D+ +S A +    + R     I    
Sbjct: 139 IDAIRHLLPADVERVMVYKFNTNDMPIFQLRVSSDRDLSLAYDL---LERNLKRPIERVA 195

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +      +  Q+    DP  L         +       N S                
Sbjct: 196 GVSKVELYGTLKRQITIRLDPKLLTAYQVDVTALGQKLQNANFSLTAGYMYD-------- 247

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
                      +G  +                                   I   L    
Sbjct: 248 -----------NGEKILVNPVGEFTDMADFENMWVSPN-----VRLSDIATISFELPEQS 291

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV-GADLG 357
           +GR L            ++  +          +    ++      +N+    +V  +   
Sbjct: 292 EGRHLDRTFAVGFNIFRESGSNLVEVSSAVMEVIEEAKSDPAFTGINLFVMDDVAKSVTS 351

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S S       + A L ++VL++ +      L+   S+  ++ +TL ++ LLG TL + S+
Sbjct: 352 SLSDLLSAGLLGALLSIVVLYLFLRQLTTTLIVVLSVPFSICITLGVMYLLGYTLNILSL 411

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G++L +G+ VD+ +++ E I +E +++ ++  +   G +     +     T  I  +  
Sbjct: 412 MGLMLAVGMLVDNAVVITESIFQERQQDNNISRATQRGVNNVSLAVIAGTATTAIVFLPN 471

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS-IDINPLSRFFLIPD 536
                  V  F   + ++I IS+F ++ I + ++  +     +    + +          
Sbjct: 472 IVGVKIDVTIFLEHVAIAICISLFASLFIAKTLIPLLTTKIAIPEAKEDSTPGYITGYGR 531

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            ++          +    +    +I +      + G D +  I L     +   L  V  
Sbjct: 532 ILSWVMANQGKTSLIALSILLSTAIPMQVVTSDDEGNDNQERIWLNYHVTQNYTLDEVEK 591

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            ++ ++      Q     K            S         V     +      +     
Sbjct: 592 TVDKMEAFLYENQERFHIKQVYTYFTPGHAVSGITLNDELPVSVGAIKEDIRENMPAFVR 651

Query: 657 VGPKISRELIRKG 669
             P    +    G
Sbjct: 652 ARPSFQWDSGNGG 664



 Score = 89.8 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 98/263 (37%), Gaps = 14/263 (5%)

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
             I +G   +R + L++V       Q+  I+        +    L+       A+ R+ + 
Sbjct: 771  HINIGFNQDRAITLAMVADFSIVQQLSQINRSYRQTALDIGANLEDDATIEEAKERIQQA 830

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
            +           T+  +     + +  +       ++++   + + +   F+        
Sbjct: 831  LAHIELPTGYQWTLDGSFSRQDEANGVMQMN----MLLALCMIYVVMAALFESLVLPTSV 886

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            IT+L+   T     F + G   ++  +  +L L+G  VN+ +V+ DR+    +L    I+
Sbjct: 887  ITSLLFSFTGVFWAFMVTGTSMSIMGMIGMLILMGIVVNNGIVLVDRIN---QLVNEGIT 943

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG------GSVIGSFAIPMAFGIVVAAS 810
              D +       +   + T     + ++P+A+        G      AI +  G+V +  
Sbjct: 944  LYDAVVLGAQSRIRPILMTVATTVLGLVPLAMGATRIGGDGPPYSPMAIAIIGGLVFSTM 1003

Query: 811  SSIFIAAPILLFIYDWRAKNARI 833
            +S+F+     + +   R    R+
Sbjct: 1004 TSLFLVPLAYVLLLKLRFNTQRM 1026



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 85/254 (33%), Gaps = 3/254 (1%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
            D      + V  N  +      S     Q               + R        V+  
Sbjct: 261 TDMADFENMWVSPNVRLSDIATISFELPEQSEGRHLDRTFAVGFNIFRESGSNLVEVSSA 320

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
            +  + + K         +   + V   ++  L      G++ + +++++      +   
Sbjct: 321 VMEVIEEAKSDPAFTGINLFVMDDVAKSVTSSLSDLLSAGLLGALLSIVVLYLFLRQLTT 380

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L  + ++   I  TLG   L G   N+ ++  ++  +G  V++ VV+ + + +  +   
Sbjct: 381 TLIVVLSVPFSICITLGVMYLLGYTLNILSLMGLMLAVGMLVDNAVVITESIFQERQQDN 440

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +      + +N      +  +    I  LP  V     +  F   +A  I ++  +S
Sbjct: 441 ---NISRATQRGVNNVSLAVIAGTATTAIVFLPNIVGVKIDVTIFLEHVAIAICISLFAS 497

Query: 813 IFIAAPILLFIYDW 826
           +FIA  ++  +   
Sbjct: 498 LFIAKTLIPLLTTK 511


>gi|330993830|ref|ZP_08317762.1| Nodulation protein nolG [Gluconacetobacter sp. SXCC-1]
 gi|329759098|gb|EGG75610.1| Nodulation protein nolG [Gluconacetobacter sp. SXCC-1]
          Length = 1063

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/546 (11%), Positives = 150/546 (27%), Gaps = 38/546 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V+L  +I   G+       L ++  D FPS                       
Sbjct: 9   LKRPYTFVVLSILIVVFGV-----RGLLRTPTDVFPSINIPVV---------AICWTYTG 54

Query: 61  DEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              + ++G +  Y +  L + +             +  + + F           ++T   
Sbjct: 55  LMPEDMSGRVVYYYERALTATVNNIEHIESQSYYGRGIVKVFFQPGTDTAVAQTQITAVS 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q V  ++       L++T     + ++  Q + D     A +            +     
Sbjct: 115 QTVIKQMPAGMTPPLVLTYNASSVPVLTLQVSSDS--MTASQIYDMSSNLIRPGLVSVAG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                        +  + D S+L     +   +       N         +         
Sbjct: 173 AAIPNPYGGQPGNIMVDLDQSKLLAHGLSATDIGNALGKQNIVLPAGDQQIGAFDWMVQT 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
               E                          ++   + G    +      +        +
Sbjct: 233 NASPE--------------------EIDSFNNMPIKQEGNSVVYLRDVAWVHAGGPPQTN 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++        +       S    +     L   +     P     V          + 
Sbjct: 273 MVLVKGHQAVLIVIMKSGDASTLAVVSGIKALLPSIVRTLPPGVDITVLGDASTFVKEAV 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                     A L  +V+ + +   +  ++   SI L ++ ++  L   G T+ + ++ G
Sbjct: 333 RDVVQEMGTAALLTSLVVLLFLGSWRSTVIIATSIPLAMLCSVIGLGAAGQTINIMTLGG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   ++ E I       + +  ++    ++     F S +   I  + LF 
Sbjct: 393 LALAVGILVDDATVMIENIDAHLEMEKDLETAIIDAANQIVIPTFVSTLCICIVWMPLFQ 452

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
              G      + M  +I+ +M  +  + R ++  + +Y     ++ +  +R         
Sbjct: 453 L-TGVAGWLFMPMAEAIIFAMIASFILSRTLVPTMAKYMLAAQVEAHARARAEGGHHEPG 511

Query: 540 IQFMRA 545
             F R 
Sbjct: 512 NIFSRF 517



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/166 (13%), Positives = 57/166 (34%), Gaps = 8/166 (4%)

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
           +   +   G   ++ S + +L     R     A      ++  +          G   N+
Sbjct: 332 VRDVVQEMGTAALLTSLVVLLFLGSWRSTVIIATSIPLAMLCSVIGLGAA----GQTINI 387

Query: 721 TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +  +   +G  V+D  V+ + +                I  + N+ +  +  +++   
Sbjct: 388 MTLGGLALAVGILVDDATVMIENI---DAHLEMEKDLETAIIDAANQIVIPTFVSTLCIC 444

Query: 781 ISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           I  +P+    G     F  PMA  I+ A  +S  ++  ++  +  +
Sbjct: 445 IVWMPLFQLTGVAGWLFM-PMAEAIIFAMIASFILSRTLVPTMAKY 489



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 64/160 (40%), Gaps = 5/160 (3%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S + + + I + F  W      IT L   +        L     ++ A+   +  +G
Sbjct: 899  LAMSILLVYLIIVVNFQSWMDPFIIITALPGALAGIAWSLFLTHTALSVPALTGAIMCMG 958

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + ++V    R+  ++     + R  I+    E +   + T+ A  I +LPM++   
Sbjct: 959  TATANSILVVSFARE--RMDVHGDALRAAIEAGY-ERIRPVLMTASAMIIGMLPMSLSNS 1015

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                     +  G++VA  +++     +   I+  ++K A
Sbjct: 1016 QN-APLGRAVMGGLLVATCATLLFVPCVFALIHSRKSKKA 1054


>gi|328881869|emb|CCA55108.1| RND multidrug efflux transporter; Acriflavin resistance protein
           [Streptomyces venezuelae ATCC 10712]
          Length = 1042

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/517 (12%), Positives = 161/517 (31%), Gaps = 35/517 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  +I  + L+      +PQ     FPS        L            +  
Sbjct: 6   RFSLAQRALIGLISIVALVFGA-IAIPQLKQQLFPSIELPMVSVLAP---------YQGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA-DSRFKENIADKVTLFLQ 120
             D V   +    +     +        +  +    +  SF       + +   V   + 
Sbjct: 56  SPDVVEKQVVEPLENNLKNVDGLKSVTSTASEGMALVMASFDYGDESTKQLVADVQQAVN 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              ++L       ++  +T+   ++VL+  +           + ++ R  +  +      
Sbjct: 116 RARAELPDTVDPQVVAGSTDDIPTVVLAAASDKDPQ----ALADQLERTVVPALEDIAGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q   +    +Q+    D  +L     +T K++               G   +     ++
Sbjct: 172 GQVSVTGVQDLQVSVTPDDGKLAAAGLSTMKLAEALRS----------GGGTMPAGSFSE 221

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                 +++ G + +           + +   S      +         + +  +  +  
Sbjct: 222 TGKSRTIQVGGGYTSLKQI-------EDLRIPSATPGKGKAVRLGDVATVRQEESQRVSL 274

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      + +     S     +        LRA         V      A   + S
Sbjct: 275 TRTNGKPSLAVMATMDKDGSAVAISDAVKEKLPELRADLGAGAELTVVSDQGPAVAKAVS 334

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A+   + ++V+ + +   +  LV   SI L+V+L L +L     +L + ++  +
Sbjct: 335 GLTTEGALGLVMAVLVILVFLTSIRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGAL 394

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + IG  VD +I+V E I+      +    ++          +  S +T +   + +   
Sbjct: 395 TIAIGRVVDDSIVVLENIKRHLGYGEERQSAILTAVREVAGAVTSSTLTTVAVFLPIGLT 454

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFI 514
           GG        F++T+  ++L S+  ++++V  +  + 
Sbjct: 455 GGMIGELFGSFSLTVTAALLASLLVSLTVVPVLSYWF 491



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/195 (14%), Positives = 66/195 (33%), Gaps = 8/195 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                              V   ++ KI  +        T     +   E      + ++
Sbjct: 798 DGARAATITAKPVGDNTGAVSATLQSKIDALDLPEGATATIGGVSEDQSEAFLNLFLAML 857

Query: 675 ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            +   + + +   F+     L  + ++    T  +G   +      + A+  +L LIG  
Sbjct: 858 AAVAIVFMLLVATFRSLIQPLILLVSIPFAATGAIGLLVVTDTAMGVPAMIGMLMLIGIV 917

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
           V + +V+ D + +        +   + + +     L   + T++A   ++LPMA+     
Sbjct: 918 VTNAIVLIDLINQYRAQ---GLGVVEAVVEGGRHRLRPILMTALATIFALLPMALGITGE 974

Query: 790 GGSVIGSFAIPMAFG 804
           GG +    A+ +  G
Sbjct: 975 GGFIAQPLAVVVIGG 989



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 69/184 (37%), Gaps = 16/184 (8%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    L  ++  +     L+ + +      K    L  +G +G++++ + +L+++   
Sbjct: 299 SDAVKEKLPELRADLGAGAELTVVSDQGPAVAKAVSGLTTEGALGLVMAVLVILVFLT-- 356

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    ++ L +   L       +  N+  + A+   IG  V+D +VV + ++  
Sbjct: 357 -SIRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK-- 413

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +        +  I  ++ E  G    +++      LP+ + GG            G + 
Sbjct: 414 -RHLGYGEERQSAILTAVREVAGAVTSSTLTTVAVFLPIGLTGG----------MIGELF 462

Query: 808 AASS 811
            + S
Sbjct: 463 GSFS 466



 Score = 41.2 bits (94), Expect = 0.74,   Method: Composition-based stats.
 Identities = 54/500 (10%), Positives = 136/500 (27%), Gaps = 57/500 (11%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
             + L  ++   G+   L             S   +      LD                
Sbjct: 537 LAIALVVLVVTFGMAPLLKTNFFDQGEQEVLSIQQELPPGTSLD---------------- 580

Query: 66  VNGFLQMYSDELRSFLKK-EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
                   + ++   L   +G+  + +    +    +F           +V+L       
Sbjct: 581 ---ASDEAAKKIEKLLAGTDGVKDYQVNVGSSGFMAAFGGGTGSNQATYQVSLE------ 631

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID---QIGISESTI 181
                                   ++   +    AIE+ +  +    D     G    + 
Sbjct: 632 ------------------------ESASFEKTRDAIEKGLAALDGIGDTKLAAGDGFGSQ 667

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +       ++   ++R  +     ++  +     S               G   
Sbjct: 668 DLSVVVKAGDAEVLKKASEQVRTAIAGMKDVTDVQSDLAQSVPRISVRANEKAADAGFDS 727

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                V    +    A       + + V+  S   +              K   V     
Sbjct: 728 ATLGAVVAQAVRGTPAAKAILDDSERDVLITSAKPVTTLAGLRALPVGPVKLGDVATVEL 787

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V     + +   +  A I+     +  G ++A L++    + L       +G      S 
Sbjct: 788 VPGPVSMTRIDGARAATITAKPVGDNTGAVSATLQSKIDALDLPEGATATIGGVSEDQSE 847

Query: 362 YKGTCAIVAGLVLIVLFMIV----LYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
                 +     + ++FM++          L+   SI       + LL +    + +P++
Sbjct: 848 AFLNLFLAMLAAVAIVFMLLVATFRSLIQPLILLVSIPFAATGAIGLLVVTDTAMGVPAM 907

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+++ IG+ V + I++ + I +   +   V  ++  G       I  + +  + A + +
Sbjct: 908 IGMLMLIGIVVTNAIVLIDLINQYRAQGLGVVEAVVEGGRHRLRPILMTALATIFALLPM 967

Query: 478 FFFGGGAVRGFAITMGLSIL 497
                G     A  + + ++
Sbjct: 968 ALGITGEGGFIAQPLAVVVI 987


>gi|153006931|ref|YP_001381256.1| CzcA family heavy metal efflux protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030504|gb|ABS28272.1| heavy metal efflux pump, CzcA family [Anaeromyxobacter sp. Fw109-5]
          Length = 1045

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/587 (10%), Positives = 163/587 (27%), Gaps = 45/587 (7%)

Query: 12  SMICCIGLLIALPNFLP-QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVNG 68
            ++   G+L+A  + +  +  +D FP                   ++ E           
Sbjct: 15  VVLLGAGILLAWGSVVAVRMPVDVFPDLTAPT-----------VTVIAEAHGMAPQEAES 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +    +   +          +       +   F            V   LQ   S L  
Sbjct: 64  QIAFPIETALNGAPGVRRVRSASGIGIAIVWAEFEWGTDIYQARQVVAEKLQLAQSALPP 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                +L   +     I+      +      ++           ++       Q + +  
Sbjct: 124 GADAPVLAPVSSIMGEILFIALTSE--RHTPMDLKTTADWTIRRRLLAVPGVSQVVPTGG 181

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
              Q      P RL     T  ++       N +     +     +        V    +
Sbjct: 182 DTKQYQVVLRPDRLSAYGLTADEVVRALRATNENASAGFYLEGGQQFLIHGVGRVRTPAD 241

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +    +               V +                    P   + +G       +
Sbjct: 242 LGETVVAVRGTEPVLVRQLGEVRL-------------------GPAMKLGEGSHDGRQAV 282

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I       +   T      L A+ +     ++++    R       +     G    
Sbjct: 283 VLGIQKQPGANTLELTKRLDAELDAIQQTLPEGMEIDRHIFRQADFIEIAIGNVVGALRD 342

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            A LV+ ++F+ +   +   +   +I L+++  +  +  LGA++   ++ G+ + +G  V
Sbjct: 343 GALLVVAIVFLFLASARATGITVLAIPLSLVTAILAMRALGASINTMTLGGMAIAVGALV 402

Query: 429 DSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
           D  I+  E +    R+++           +         +I  + +  ++  + LFF   
Sbjct: 403 DDAIIDVENVVRRLREDRGRGGQLHYLGIVFEASREIRGSIVYATLIIVLVFLPLFFLSG 462

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFFLIPDCI 538
             G  ++       +S+  S+  A+++  A+ +  +   + ++      L  +       
Sbjct: 463 VEGRLLQPLGFAYVVSLAASLLVALTVTPALCLTVLPNARAVRESREGRLVHWLKARYEP 522

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
            +  +  R+     + +  + +  L         +       L + A
Sbjct: 523 LLGRVLPRWRLAAAAGMGLLAAAALALALAGRAFLPEFNEGTLTLSA 569



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 76/250 (30%), Gaps = 13/250 (5%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V+A R  +  +VR   E      +       +    V L  Q         + + +  +
Sbjct: 245 TVVAVRGTEPVLVRQLGEVRLGPAMKLGEGSHDGRQAVVLGIQKQPGANTLELTKRLDAE 304

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA-----IAMLIYIWIRFKWYFALGA 696
           +  I                  + I   I  V+ +      + + I              
Sbjct: 305 LDAIQQTLPEGMEIDRHIFRQADFIEIAIGNVVGALRDGALLVVAIVFLFLASARATGIT 364

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYT 752
           +  + L +   +      G   N   +  +   +G  V+D ++    V  R+R++     
Sbjct: 365 VLAIPLSLVTAILAMRALGASINTMTLGGMAIAVGALVDDAIIDVENVVRRLREDRGRGG 424

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAA 809
             + +  ++ ++  E  G  VY ++   +  LP+    G    ++          +  + 
Sbjct: 425 Q-LHYLGIVFEASREIRGSIVYATLIIVLVFLPLFFLSGVEGRLLQPLGFAYVVSLAASL 483

Query: 810 SSSIFIAAPI 819
             ++ +   +
Sbjct: 484 LVALTVTPAL 493



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 68/161 (42%), Gaps = 10/161 (6%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIG 731
            +I+ I +L+Y+ +R        A+  + L +    G     L G   ++ ++   +TL G
Sbjct: 870  VIAGIFLLLYLALRSGRD---SALVMVNLPLALAGGAAGVYLSGGVLSVASIIGFITLFG 926

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + +++   + +++            + +   E L   + T++A  + ++P+A+ GG
Sbjct: 927  IATRNGLMLVSHV-QHLVEQEGVTDAETAVRRGALERLSPILMTALATGLGLVPLALAGG 985

Query: 792  SVIGSF----AIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                      A+ +  G+V + + ++ +   + L     R 
Sbjct: 986  QPGSEIETPMAVVILCGLVTSTALNMLVVPALYLRFGSVRR 1026


>gi|254302873|ref|ZP_04970231.1| RND superfamily resistance-nodulation-cell division antiporter
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148323065|gb|EDK88315.1| RND superfamily resistance-nodulation-cell division antiporter
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 1021

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 73/618 (11%), Positives = 167/618 (27%), Gaps = 44/618 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++      IGLL            +  P+                        
Sbjct: 9   RRPVATTMVMVSFIFIGLLAMF-----SMKKELIPNIKIPVVT---------ITTTWNGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +     +  S ++             + + ++F      +    ++   +  
Sbjct: 55  VSEDVETQVTKKIKDSLSNVEAIDKIQTVSAYGSSTVVVNFDYGVDTDEKVTQIQREVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    L+        ++      I          +  I  Q   ++       
Sbjct: 115 ITNNLPSDANTPLVRKVEAAGGNMTAI---IAFNADSKTALTTFIKEQLKPRLESLPGIG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         QL  + D  +L     +  ++         +                   
Sbjct: 172 QVDIFGNPEKQLQIQVDSDKLASYNLSPMELYNIVRTSVATYPIGKLS------------ 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G          D        +I     G          +I        +  
Sbjct: 220 --------TGNKDMIIRFMGDLNYIDQYKNILISSDG-NTLRLKDVADIVLTTEDADNVG 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +    +          A      ++          +EE        S S 
Sbjct: 271 YLNGKESVVVLLQKSSDGDTITLNNAAFKAIEEMKPYMPAGTEYSIEEDASENINSSISN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      L  I+LF  +   +  ++   ++ + ++ T A L++ G TL L S+ G+ 
Sbjct: 331 VSSSAVQGLVLATIILFAFLKSFRTTILISLALPVAIVFTFAFLAMRGTTLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSV-FCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +G+G+  D++++V + I     +  S    + +        ++  S +T ++  + + F 
Sbjct: 391 IGVGMLTDNSVVVVDNIYRHITELNSPVMEASENATEEVTFSVIASALTTIVVFLPILFI 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINPLSRFFLIP 535
            G      R  +  +  S L ++  AI+++  +    +  K MKS    +    + F + 
Sbjct: 451 PGLAREFFRDMSYAIIFSNLAAIIVAITMIPMLASRFLNRKSMKSEDGRLFKKVKAFYLK 510

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                   +     + I + F    +   F          +G   L        DL+   
Sbjct: 511 VINKAISHKGLTVLIMIILFFFSIFVGPKFLKFEFMPKQDEGKYALTAELQNGTDLAKAE 570

Query: 596 SNLESLQIGDISFQNFDG 613
              + L+    S  +   
Sbjct: 571 RIAKELEEIIKSDPHTQS 588



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 92/296 (31%), Gaps = 3/296 (1%)

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                  +R       I  L +     ++   G    ID    I +    N      V  
Sbjct: 199 PMELYNIVRTSVATYPIGKLSTGNKDMIIRFMGDLNYIDQYKNILISSDGNTLRLKDVAD 258

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             L +    ++ + N       L++               + +++    +   +     E
Sbjct: 259 IVLTTEDADNVGYLNGKESVVVLLQKSSDGDTITLNNAAFKAIEEMKPYMPAGTEYSIEE 318

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                I+  +       V    +A +I       +   +     L + I  T  F A+ G
Sbjct: 319 DASENINSSISNVSSSAVQGLVLATIILFAFLKSFRTTILISLALPVAIVFTFAFLAMRG 378

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL ++  +   +G   ++ VVV D +     +   +    +  + +  E     + +
Sbjct: 379 TTLNLISLMGLSIGVGMLTDNSVVVVDNI--YRHITELNSPVMEASENATEEVTFSVIAS 436

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++   +  LP+    G     F   M++ I+ +  ++I +A  ++  +        
Sbjct: 437 ALTTIVVFLPILFIPGLA-REFFRDMSYAIIFSNLAAIIVAITMIPMLASRFLNRK 491



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 80/219 (36%), Gaps = 7/219 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                          V    +   + ++   + P ST+  +     +  ++ + +    + 
Sbjct: 787  NGIYTVTISGNDGGVGLGAIQSKIIEEFNNLNPPSTVSYSWGGQTENMQKTMGQLSFALS 846

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            IS   +   +  +F+ +   +  I ++ L +   +    +     ++  +  V+ L G  
Sbjct: 847  ISIFLIYALLASQFESFIMPIIIIGSIPLALIGVIWGLVILRQPIDIMVMIGVILLAGVV 906

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +V+ D ++    + T        +  S    L   + T+M     ++PMA+    G
Sbjct: 907  VNNAIVLIDFIK---TMRTRGHDREYSVIYSCETRLRPILMTTMTTVFGMIPMALGLGEG 963

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
                   AI + FG+  +   ++ +   +   + D+  K
Sbjct: 964  SEFYRGMAITVIFGLSFSTILTLVLIPILYTMVDDFSNK 1002


>gi|218562649|ref|YP_002344428.1| multidrug efflux system membrane protein [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|112360355|emb|CAL35151.1| integral membrane component of efflux system (multidrug efflux
           system CmeDEF) [Campylobacter jejuni subsp. jejuni NCTC
           11168]
          Length = 1005

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/542 (11%), Positives = 153/542 (28%), Gaps = 50/542 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++ +  +   GL+ A    +        P     ++I+      G  + V     
Sbjct: 8   RPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIKITSKIN------GDLNFV----- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S +        +     +   + F   +  E  A+ V   +  +
Sbjct: 57  ----ESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAANDVRDKIGTL 112

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L   P+   + + +   IS+ L            ++   EI  +    +   E   +
Sbjct: 113 --SLPSKPEIEKISSDSGSAISLFLY-------SKDKLQLMREINDKIKPFLQRVEGVGK 163

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  E  P++LR+       ++      N  +                 + 
Sbjct: 164 IEAKGFLEPQIRIELKPNQLRKYNLNALDVANIIKSQNFKQALGELNNNQDNYIIKGYFE 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  E+S + +                            F     NI           +
Sbjct: 224 ATNLEELSNLRIKT------------------------GVFLSDIANISSLYEDEKQSAL 259

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    I+       +L           +            S  
Sbjct: 260 YEGKEGVLLELGKITNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQV 319

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L L+++F+ +      L+A  +I  ++I T  ++ LLG  L   +   + L
Sbjct: 320 IFDMVLGIFLTLVIVFLFLRNLSTTLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTL 379

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLD--MGFSRAYSTIFDSNITALIATVVLFFF 480
            IG+ +D  I+V E I ++ +    +  +         +  +I    +   I    +   
Sbjct: 380 SIGIFIDDAIVVIENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSI 439

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G       I++   I+IS   ++ ++ ++    +  K+ K  +        +      +
Sbjct: 440 SGLFFNALGISVASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENL 499

Query: 541 QF 542
            +
Sbjct: 500 LY 501



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 7/200 (3%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                      V   +     +I    +I         I + L +     V+   + ++I
Sbjct: 274 TNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVI 333

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                      L A   +   I  T     L G + N     A+   IG  ++D +VV  
Sbjct: 334 VFLFLRNLSTTLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI- 392

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +N+     +          INE     +  S+      +P++      G    +  I
Sbjct: 393 ---ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGI 449

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +A GIV++   S+F+   I
Sbjct: 450 SVASGIVISFLVSVFLIPSI 469



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 93/256 (36%), Gaps = 9/256 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +++  S++                KN  V++     D         ++    
Sbjct: 747 ISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQKLLLDNMD 806

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             +    ++         +  E ++   + V ++ + + + +   ++ +   L  + T+ 
Sbjct: 807 KILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFILPLIIMITMP 866

Query: 702 LDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           L     ++G F + G  F+L  + A++ L G    + +++ D      K     +     
Sbjct: 867 LAFGGASIGLF-ITGHNFSLFVLIAIILLFGMVGKNAILLVDVAN---KKCHEGLDPDKA 922

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  +    L   + T+ A   ++LP+A+    G       AI + FG++ +   ++ +  
Sbjct: 923 LLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLISSTLLTLLVVP 982

Query: 818 PILLFIYDWRAKNARI 833
            +  F +   +K  +I
Sbjct: 983 ALFKFCFKLDSKLRKI 998


>gi|153955003|ref|YP_001395768.1| transporter protein [Clostridium kluyveri DSM 555]
 gi|219855445|ref|YP_002472567.1| hypothetical protein CKR_2102 [Clostridium kluyveri NBRC 12016]
 gi|146347861|gb|EDK34397.1| Predicted transporter protein [Clostridium kluyveri DSM 555]
 gi|219569169|dbj|BAH07153.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1017

 Score =  122 bits (306), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 53/606 (8%), Positives = 173/606 (28%), Gaps = 37/606 (6%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             +     ++I        +     P       +            +   D    +   +
Sbjct: 13  IVLFLVAVIIIGGFYCYYITPKQESPDVSSPAAM---------ITTIYPGDSPGDIEKLV 63

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               ++    +          +   + + +   ++  K+     +   ++ + S L    
Sbjct: 64  TKKIEDKVEEIDGYDYVESYSKNSASIVIVYLNNNADKDKAWRDLRDKIKDLKSDLPEGC 123

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           + + + T   +   +++S +  +         + +I +Q  D         +     +  
Sbjct: 124 QDSKIDTNLTETAGMIISVSGKNYSYEQLGNYAEDIKKQLSD----ISGISRFDVDGKQD 179

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            Q+  E D S++ +   +   +       N         +   +             +I 
Sbjct: 180 KQVKVEVDWSKINKYSISIEDVCSVLKAQNIDIPSGSLDLSTGKIKVNTPGTFTSLQDIE 239

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
              +  ++   +    K +  +  D                                   
Sbjct: 240 NTIVGVSSTTGETMKIKDIAKVYMDYDDDSELKFTD-----------------NGTGAVL 282

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                +   +     +        ++                     S S +        
Sbjct: 283 LAGYFENNKNIVLIGDDVKKKLDEIKKQLPKDLTIDEVTFQPEDVSDSVSFFMKNLREGV 342

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            LV+I + + +      LV    I +++ ++  ++++LG  +   S   +++ +G+ VD 
Sbjct: 343 ILVIITILIGMGLRNS-LVVSAVIPISIAMSFVVMNVLGIKVEQMSTTALIIALGILVDD 401

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRG 487
            +++ + I+    +  +   +   G  R +  +F S +  + A   L       G  ++ 
Sbjct: 402 AVVIGDVIQVGIDQGMTGDKAALHGIKRLFVPVFTSTLIIVGAFAPLLTIPGAVGEFLKS 461

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
               + + +  S  +A+ +  AM   + +  K  + +      F  +   +   F   + 
Sbjct: 462 LPQVVMICVTCSYLSALFVTPAMSSLVFKKSKKVNRESKVRRMFHRL---LTYGFSHKKT 518

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
             +    +F +    +       +    K  + + V   +  D++   + ++ ++    +
Sbjct: 519 VVMAAIGVFVVSMCIIKTLGMQFFPYVDKNIVYIDVSNEKVDDINSTANLVKHVEDILKA 578

Query: 608 FQNFDG 613
            +   G
Sbjct: 579 QKEVTG 584



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 39/248 (15%), Positives = 104/248 (41%), Gaps = 8/248 (3%)

Query: 586  NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
            +   +  V+ S +  + +     Q    EK+  + +            V   + KKI ++
Sbjct: 768  SSITNNKVMLSQVAEVALSPELDQIKHYEKDKTITVYSDIKTGYNSVDVENTLSKKIDKM 827

Query: 646  VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDI 704
                     +    +I +      I   + + + + + ++I+F  +   L  + +L L +
Sbjct: 828  DLNDVKVIYDGEKYQIQKNFTSLAI-AGVFTILIIYVLLFIQFKSFIQPLVIMCSLPLSL 886

Query: 705  T-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
               T+G   +F +  +LTAV  +++LIG  + + +++ + +          +S  +   +
Sbjct: 887  IGVTIGLL-IFKMPLSLTAVMGIISLIGVVIRNAILLIEYIHD---GRDEGLSIDEACLQ 942

Query: 764  SINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            ++++     + +S A    ++P+A    ++ G  ++ + FG++ A   + FI  P++  +
Sbjct: 943  AVSQRFRPIILSSTATITGLIPLAFSKSALFGPMSVTIMFGLLTATFLT-FIVVPVVYSL 1001

Query: 824  YDWRAKNA 831
               + K  
Sbjct: 1002 ITAKIKQR 1009



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 51/142 (35%), Gaps = 8/142 (5%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           + A+  +   I  +     + GI+    +  A++  +G  V+D VV+ D +         
Sbjct: 361 VSAVIPI--SIAMSFVVMNVLGIKVEQMSTTALIIALGILVDDAVVIGDVI---QVGIDQ 415

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
            ++        I         +++    +  P+    G+V   + S    +   +  +  
Sbjct: 416 GMTGDKAALHGIKRLFVPVFTSTLIIVGAFAPLLTIPGAVGEFLKSLPQVVMICVTCSYL 475

Query: 811 SSIFIAAPILLFIYDWRAKNAR 832
           S++F+   +   ++    K  R
Sbjct: 476 SALFVTPAMSSLVFKKSKKVNR 497


>gi|209885558|ref|YP_002289415.1| cation efflux system protein CzcA [Oligotropha carboxidovorans OM5]
 gi|209873754|gb|ACI93550.1| cation efflux system protein CzcA [Oligotropha carboxidovorans OM5]
          Length = 1076

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 66/665 (9%), Positives = 174/665 (26%), Gaps = 61/665 (9%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            M+  +G+         +  +D  P                 +++ ++++          
Sbjct: 16  VMMAVVGVAAFGVWNFTRLPIDAVPDI---------------TNVQVQINTQAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
               +    +   + L K        R   +++T+ F D          V   +Q V  +
Sbjct: 61  TEQRITFPIETAMAGLPKLDYTRSLSRYGLSQVTVVFKDGTDIYFARQLVNERIQQVKDQ 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQIGISES 179
           L    +  +   +T      + +                  +           Q+ +   
Sbjct: 121 LPTGIETGMGPISTGLGEIYLYTVEAKPGAKTPDGKEYSPTDLRTIQDWIIKPQLRLVPG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            ++         Q     DP+RL       + +       NN+           +     
Sbjct: 181 VVEVNTIGGYEKQFHVLPDPARLMAFKLGFSDVMTALASNNNNVGAGYIERNGEQYLVRT 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V +  EI  I +                                   + +   +   
Sbjct: 241 PGQVANSEEIRNIVIG--------------------ARDGIPIRVRDVAQVREGKDLRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +                +     +      + +        +             + 
Sbjct: 281 AATIDGKETVLGTAMLLIGDNSRTVAQAVAAKLSEIAKSLPEGIITNAVYDRTHLVEATI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  +      A LV+ +LF+I+   +  +V    I L+++ T+  +     +  L S+  
Sbjct: 341 ATVEKNLIEGAILVIAILFLILGNIRAAVVTACVIPLSMLFTITGMVETRVSANLMSLGA 400

Query: 420 I--VLGIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIAT 474
           I   + +  AV         + EE  +   +  +    +   + +   I  S    +I  
Sbjct: 401 IDFGIIVDGAVIIVENCLRLLAEEQHRRGRLLTAPERFETILAGSREVIKPSLFGTMIIA 460

Query: 475 VV------LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           VV      L    G      A+T+ +++L +   +++ V A +   +  K  +  ++   
Sbjct: 461 VVYLPVLTLTGVEGKMFTPMALTVLMALLGAAIFSMTFVPAAIALFVTGKVSEKENVFMR 520

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
               +    +       +   +   ++     +      G       +G + L   A   
Sbjct: 521 GARHVYLPLLDWTIRHRKTVAIAAVVIVIASGVAATKMGGEFIPSLDEGDVAL---AAIR 577

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
           +  + +  +LE  +  +   +     K+   R       + A    +      +      
Sbjct: 578 IPGTSLTQSLEMQKALERRVKKIPEVKDVFARTGTAEVATDAMPPSISDGYVMLKPRDQW 637

Query: 649 STIQN 653
              + 
Sbjct: 638 PNPEK 642



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 86/238 (36%), Gaps = 15/238 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++  +       Q         + +     D    + V E  +    ++   +    + 
Sbjct: 822  SSIAKVDAAPGPNQISRENGKRRIVVTANVRDRDLGSFVEEAQRAVEAKVKLPAGYWMSW 881

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD---ITKTLGFFA 712
                +      ++  + V ++ + + I +++ F       A + L+     +  T G  A
Sbjct: 882  GGQFEQLVSATKRLTIVVPVALLLVFILLFMTF----GSAADSLLVFSGVPLALTGGILA 937

Query: 713  LF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
            L   GI  +++A    + L G +V + +V+   +    +L +   S    + +     L 
Sbjct: 938  LLLRGIPLSISAGVGFIALSGVAVLNGLVIITFI---ERLRSEGKSILAAVHEGALTRLR 994

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   + +    
Sbjct: 995  PVLMTALVASLGFVPMAIATGAGAEVQRPLATVVIGGIISSTILTLLVLPALYVLFRR 1052


>gi|154243708|ref|YP_001409281.1| CzcA family heavy metal efflux protein [Xanthobacter autotrophicus
           Py2]
 gi|154162830|gb|ABS70045.1| heavy metal efflux pump, CzcA family [Xanthobacter autotrophicus
           Py2]
          Length = 1056

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 69/591 (11%), Positives = 166/591 (28%), Gaps = 42/591 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +++  +     GL       L    LD  P       I          +      
Sbjct: 11  RNLVLVLVGTAFAVAAGLYA-----LRTLPLDALPDLSDVQVI---------VYTDYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + +  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLSTSMLTVPRSKVVRGFSFFGASFVYVIFEDGTDPYWARSRVLEYLNA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L      +L    T        +       ++        +IR        +E   
Sbjct: 117 AARRLPAGVTPSLGPDATGVGWVYQYAVVAKQMTLAELRSLQDWVIRF---AAAKAEGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP+RLR L     ++       N    G    +         + 
Sbjct: 174 EVASVGGFVKQYQIVVDPNRLRALGIPLERVRAAVAASNADVGGRTVELSEFEFMVRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                      +   + G     +        P        
Sbjct: 234 YLRSVADIE-------------------NVVLKTDRGVPLRVKDVARVEIGPDERRGITE 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    IE      A +          +           +   
Sbjct: 275 LDGEGEVASGIVLQRFGANALAVIENVKARLAEIAPSLPKGVEIVPVYDRSELIGRAIET 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            KGT    + +V +V  + +L+ +  LVA   + + +++  A +  +G    + S+ GI 
Sbjct: 335 LKGTLVEESIIVALVCIVFLLHLRSALVAILMLPVGILMAFAAMKAIGLGSNIMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + +G  +D+ I++ E   +      + +     L    S     +F S +   ++ + +F
Sbjct: 395 IAVGAMIDAAIVMIENAHKHLERAPEGKPRVEILVEAASEVGPALFFSLLVITVSFLPIF 454

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   ++++V A+M+  +R + +             + 
Sbjct: 455 TLEAQEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVVFVRGRIIPEHRNPINRALIFVY 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++A+   + ++++    +       G  +      G  + +   
Sbjct: 515 RPVIRTVLKAKTLTILLALVVLGVTAWPARQLGSEFMPSLDEGTLMYMPTT 565



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 64/159 (40%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + ++  + +R     AL AI  L + I          G+  N+ ++  +   +G
Sbjct: 343 SIIVALVCIVFLLHLR----SALVAILMLPVGILMAFAAMKAIGLGSNIMSLGGIAIAVG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             ++  +V+ +   K+++         +++ ++ +E      ++ +   +S LP+     
Sbjct: 399 AMIDAAIVMIENAHKHLERAPEGKPRVEILVEAASEVGPALFFSLLVITVSFLPIFTLEA 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVVFVRGR 497



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 15/146 (10%)

Query: 697  ITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----DRMRKNMKL 750
            I  L L      G       G   ++      + L G +    VV+       MR+    
Sbjct: 889  IVMLSLPFALVGGIWLMWWLGFNLSVAVAVGFIALAGVAAETGVVMLIYLDQAMRELKAE 948

Query: 751  YT------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
                    T       I     E +   + T +A    +LP+      G  V+   A+PM
Sbjct: 949  RAAKGRPFTRADLNRAIMLGAVERVRPKMMTVVAIMAGLLPILWSTGTGSEVMQRIAVPM 1008

Query: 802  AFGIVVAASSSIFIAAPILLFIYDWR 827
              G+V +   ++ +   +   +  WR
Sbjct: 1009 IGGMVSSTVLTLVVIPAVYALVKGWR 1034


>gi|150002666|ref|YP_001297410.1| drug efflux protein [Bacteroides vulgatus ATCC 8482]
 gi|254882166|ref|ZP_05254876.1| drug efflux protein [Bacteroides sp. 4_3_47FAA]
 gi|319643276|ref|ZP_07997904.1| drug efflux protein [Bacteroides sp. 3_1_40A]
 gi|149931090|gb|ABR37788.1| drug efflux protein [Bacteroides vulgatus ATCC 8482]
 gi|254834959|gb|EET15268.1| drug efflux protein [Bacteroides sp. 4_3_47FAA]
 gi|317385180|gb|EFV66131.1| drug efflux protein [Bacteroides sp. 3_1_40A]
          Length = 1058

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 64/594 (10%), Positives = 167/594 (28%), Gaps = 49/594 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N   L     ++  + L +     +P   +   PS         GL         +  
Sbjct: 1   MSNPRNLSSFTLIVTFVCLSLIGVVLVPLLPVKLAPSRTLP-----GLT----VSFSMPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +    +   +    + + + +K       +       I+L        +    +V+  ++
Sbjct: 52  NSSRVIEAEVTSKLEAMMARVKGIRKVNSTSDNGSGSISLELDKHADIDVTRFEVSTIIR 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L        + T    + +            ++ I             +G  +  
Sbjct: 112 QTWPQLPEGVSYPQISTRRSDDKASRPFITYTLNAPANPILIQQYAEENIKPVLGQLKGI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +    ++   E D  +L +L  T   +          +   +  +    +     
Sbjct: 172 YKVELNGATPMEWQLEYDSDQLSRLGITLQAVQRAINRHYEKEFLGICSIEKGAEGR--- 228

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                        +     + + +       I                 +          
Sbjct: 229 -----------EWIRLVRTSTEKEMEFEPGAIQLQAEDGTMVTLDKLIKVRHVEERPQSY 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + +   +          L   L+    P     +             
Sbjct: 278 YRINGLNSVYLYITAEETANQLNLSGEVKHLMGELQQKMPPGYEVHISYDATEYIQKELD 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   ++L+ + +I    ++  +   S+ +N+ + + L    G  + L S+AGI
Sbjct: 338 KIYFRTGLTVLILLLFVALITRNLRYLFLIVTSLAVNISVAVILYYAFGLEMQLYSLAGI 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + + L +D+ I++ + I             L     +A+ ++  + +T + A V++FF 
Sbjct: 398 TISLNLVIDNTIVMTDHI-------------LHRRNLKAFVSVLAATLTTIGALVIIFFL 444

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----------MKSIDINP 527
                  ++ FA  + +++ +S+F A+  V +M+  I   KK            +     
Sbjct: 445 DEKIRLNLQDFAAVVIINLAVSLFVALFFVPSMIDKIGLEKKKRRKRRRFLLRPTFMKRL 504

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              F      +     R R     + +L     + +L       G   +   ++
Sbjct: 505 TVYFTRFYQGVIYYLCRFRVIACLLLLLGFGLPVFMLPEKMEGEGKWVEYYNKV 558



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 77/250 (30%), Gaps = 8/250 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V     +D    +    +      S Q    E               ++     + K   
Sbjct: 812  VNIPFFIDGRSYKLADFATVRKGQSPQKVAKENQQYRLCLQYEYIGSSEQGKKLLKKDLE 871

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRF-KWYFALGAITTL 700
                 L      E      S          +++  IA++ +   I F      L  I  +
Sbjct: 872  EFNKILPMGYTAENEQDYWSWNKKDNKQYALLLIVIAIIFFTTAILFNSLKQPLAIIFVI 931

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +        F LFG+ F+    A+ + L G +VN  + + +      K Y   +  R  
Sbjct: 932  PISYIGVFLTFYLFGLNFDQGGFASFVLLCGITVNASIYILNEYNAIRKRYPLLLPVR-A 990

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS---IFIAA 817
              K+ N  +     T ++  +  +P  V  G    +F  P+A G +     S   IF+  
Sbjct: 991  FTKAWNSKILPIFLTVVSTILGFIPFMV--GDGKEAFWFPLAAGTIGGLVMSILGIFLFL 1048

Query: 818  PILLFIYDWR 827
            PI       R
Sbjct: 1049 PIFSLKKQKR 1058



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 90/250 (36%), Gaps = 24/250 (9%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G IQL       V L  +       +     ++       +L     +  + +  +  ++
Sbjct: 247 GAIQLQAEDGTMVTLDKLIKVRHVEERPQSYYRINGLNSVYLYITAEETANQLNLSGEVK 306

Query: 637 MVKKKITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            +  ++ + +P    +  +      I +EL +      +   I +L    I     +   
Sbjct: 307 HLMGELQQKMPPGYEVHISYDATEYIQKELDKIYFRTGLTVLILLLFVALITRNLRYLFL 366

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTT 753
            +T+L ++I+  +  +  FG+E  L ++A +   +   +++ +V+ D +  R+N+K    
Sbjct: 367 IVTSLAVNISVAVILYYAFGLEMQLYSLAGITISLNLVIDNTIVMTDHILHRRNLK---- 422

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
                              +  ++    +++ +      +   +  FA  +   + V+  
Sbjct: 423 --------------AFVSVLAATLTTIGALVIIFFLDEKIRLNLQDFAAVVIINLAVSLF 468

Query: 811 SSIFIAAPIL 820
            ++F    ++
Sbjct: 469 VALFFVPSMI 478


>gi|116625992|ref|YP_828148.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116229154|gb|ABJ87863.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1032

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/551 (13%), Positives = 158/551 (28%), Gaps = 38/551 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      +L   I   G +      +       FP+                    L   
Sbjct: 9   RRPAGTTLLTVAIALAGAVAFSVLPVSPLPQVDFPTIAVAAG--------------LPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +     +        S       +TL F  SR     A  V   +  
Sbjct: 55  SAETMASSVASPLERQFGHIAGLTEMTSSSSLGTTSVTLQFDLSRDINGAARDVEAGINS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L  +   N          + ++    +                    ++   +   
Sbjct: 115 ARTFLPANLPANPTYRKVNPADAPIMI-LGLTSGKYDRASLYDAASTILQQKLSQIQGVG 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q       L  +  E DP+RL  +  T   +     L N  +        F+        
Sbjct: 174 QVSVGGGTLPSVRVEVDPARLSSMGLTLQNVQSMLSLQNAHQPTGQISDDFVTADLITND 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    E                       +                N+      V    
Sbjct: 234 QIFRAAE--------------------YKPLVLGYNHGAAVRLSDVANVLDSTQNVRTAG 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        I   +   +   T++        L++         V          S   
Sbjct: 274 YLNGGPAVVIIIYRQPGANILQTVDRIEAEFPSLKSSIPQGIDMTVVLDRTTTIRASVKD 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            + T  I   LV+IV+F+ +   +  L+   ++ +++I T A++ LLG ++   S+  + 
Sbjct: 334 VERTLVISIVLVIIVVFLFLRSARATLIPSIAVPVSLIGTFAVMYLLGYSIDNLSLMALT 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           +  G  VD  I+V E I     +  + F +   G      T+F  +I+ +   + +    
Sbjct: 394 ISTGFVVDDAIVVMEDISRHLEEGMAPFAAALQGAREIGFTVFSISISLIAVFIPILMMA 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R FAI +  +IL+SM  +++    M  +++R ++ +   +   +   +    +
Sbjct: 454 GVVGRLFREFAIVLSTAILVSMIISLTTTPMMCAYLLRDERNRRHGLFYRASESVFNGML 513

Query: 539 AIQFMRARFWG 549
           A+      +  
Sbjct: 514 AVYRRSLAWVL 524



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 7/145 (4%)

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
              L     + + +  T     L G   +  ++ A+    G+ V+D +VV + +    + 
Sbjct: 357 RATLIPSIAVPVSLIGTFAVMYLLGYSIDNLSLMALTISTGFVVDDAIVVMEDI---SRH 413

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVV 807
               ++      +   E        S++     +P+ +  G V      FAI ++  I+V
Sbjct: 414 LEEGMAPFAAALQGAREIGFTVFSISISLIAVFIPILMMAGVVGRLFREFAIVLSTAILV 473

Query: 808 AASSSIFIAAPILLFIYDWRAKNAR 832
           +   S+    P++        +N R
Sbjct: 474 SMIISL-TTTPMMCAYLLRDERNRR 497



 Score = 42.8 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 36/88 (40%), Gaps = 3/88 (3%)

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
            +      +S  D I ++        + T+MAA    LP+A     G  +     + +  G
Sbjct: 932  VAEREQGLSTEDAIFRACLLRFRPILMTTMAALFGALPLAFGTGTGSELRRPLGVTIVGG 991

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++V+   +++    + LF+   R +  R
Sbjct: 992  LIVSQLLTLYTTPVVYLFLDGLRVRFQR 1019


>gi|114568732|ref|YP_755412.1| putative cation efflux system transmembrane protein [Maricaulis
           maris MCS10]
 gi|114339194|gb|ABI64474.1| putative cation efflux system transmembrane protein [Maricaulis
           maris MCS10]
          Length = 1056

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 76/587 (12%), Positives = 154/587 (26%), Gaps = 35/587 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L  +I  + L +     L ++ LD  P       I                     V   
Sbjct: 14  LIVLIMAVLLAVFGAFSLSRTPLDAIPDLSDVQVI---------IKTTYPGQAPQVVEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  V   L   
Sbjct: 65  VTYPLTTAMLAVPGAVTVRGYSFFNDSYVYIIFEDGTDLYWARSRVLEYLSQVAPTLPEG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               L    T                     E           ++   E   +      +
Sbjct: 125 ASPALGPDATGVGWIYQY-ALVDRTGQHDLSELRSLQDWFLKFELQTIEGVSEVATIGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     DP RLR      + +       N    G +  +            ++   ++
Sbjct: 184 VRQYQVVADPDRLRAYNIPLSHLRMAIQRGNQETGGRVIEMAEAEYMVRASGYIQGIEDL 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                               + +S  E G         D    P      G +       
Sbjct: 244 EA------------------IPVSVTENGTPILLSDVADIQIGPELRRGIGELNGEGEAV 285

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +   +   +   TIE        L          +      G    +    +      
Sbjct: 286 GGVIIMRYGENALATIERVEERIHELEESLPEGVEIVTTYNRAGLIERAVHSLQEKLIEE 345

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V ++  + + + +  LV   S+ L V+    +++  G    + S+ GI + IG  VD
Sbjct: 346 FLVVALICAIFLFHLRSSLVIVLSLPLGVLAAFIIMNAQGINANIMSLGGIAIAIGAMVD 405

Query: 430 SNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-------GG 482
           + I++ E + +   K +    +     + A   +  +   +L+     F          G
Sbjct: 406 AAIVMIENLHKHIEKEEITPENRWRIVAEASVEVGPALFFSLLIITFSFVPIFALEAQEG 465

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   ++  +   ++++V  +M F IR K                        
Sbjct: 466 RLFHPLAFTKTYAMAAAAGLSVTLVPVLMGFFIRGKITPEHKNPINRVLMAAYRPFINVV 525

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
           +   +  VG+++L    +   L   G  +  D   G  L + +  P 
Sbjct: 526 LARPWVMVGMAVLVMASAAVPLSRMGSEFMPDLDEGDLLYMPSAYPA 572



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 54/160 (33%), Gaps = 12/160 (7%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +  LI     F    +L  + +L L +          GI  N+ ++  +   IG  V+
Sbjct: 346 FLVVALICAIFLFHLRSSLVIVLSLPLGVLAAFIIMNAQGINANIMSLGGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
             +V+     +N+  +             ++ ++  E      ++ +    S +P+    
Sbjct: 406 AAIVMI----ENLHKHIEKEEITPENRWRIVAEASVEVGPALFFSLLIITFSFVPIFALE 461

Query: 791 GS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                +    A    + +  AA  S+ +   ++ F    +
Sbjct: 462 AQEGRLFHPLAFTKTYAMAAAAGLSVTLVPVLMGFFIRGK 501



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/245 (13%), Positives = 74/245 (30%), Gaps = 16/245 (6%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + ++ +                 +     D    + V +        I   +    + 
Sbjct: 792  SRIATIDVSSGPGVIRSENARLNGWIYVDIADVDIGSYVADAQAAVQEHIDLPAGYSISW 851

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI-TTLILDITKTLGFFALF 714
                +       K  + V ++ + +++ ++  F     +  I  TL L +   L    L 
Sbjct: 852  SGQYEYMERAKAKLSIVVPVTLVIIVLLLFFNFGRLIPVLLIMVTLPLSLVGGLWLLDLL 911

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVV-------YDR----MRKNMKLYTTSISFRDLIDK 763
            G   ++      + L G +V   V++         R     R   +   T +  R+ I +
Sbjct: 912  GYNMSVAVGVGFIALAGVAVEIGVLMIVYLEQALARRKALARDEGRAM-TVMDLREAIVE 970

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                 +   + T       +LP+      G  V+   A PM  G+  A   ++ +     
Sbjct: 971  GAVMRVRPIMMTVAVIVAGLLPIMFGTGTGSEVMRRIAAPMVGGMTSATILTLLVIPAAF 1030

Query: 821  LFIYD 825
            L    
Sbjct: 1031 LLWQR 1035


>gi|283850924|ref|ZP_06368209.1| acriflavin resistance protein [Desulfovibrio sp. FW1012B]
 gi|283573570|gb|EFC21545.1| acriflavin resistance protein [Desulfovibrio sp. FW1012B]
          Length = 1038

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/550 (11%), Positives = 153/550 (27%), Gaps = 28/550 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
               L   E   +   +    +   + +        S  +   +I L F  +R     A 
Sbjct: 48  VQAQLPGAEPQTMATSVAAPLERQFARIAGVTEMTSSSSRGSTRINLQFDLTRDINGAAR 107

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +      L    ++N          + ++    +        +           +
Sbjct: 108 DVQSAINAARGYLPPTLRQNPTYRKMNPADAPIMV-LALTSDTVSRAKMYDVAATVLQQK 166

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   Q       L  +    +P+ L Q   + + +         ++          
Sbjct: 167 LSQVDGVGQVFVGGGALPAVRVNVNPTSLAQKGLSLSDVRGMLAKTTVNRPKGRVEA--- 223

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                            G        N           +                 I   
Sbjct: 224 -----------------GDVSFEVETNDQLHEAWEYEPLILSYKNGAAVRLSDVATITPS 266

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +  V    ++        I   +   +   T++    L   L           VE     
Sbjct: 267 VEDVRTAGLVGGRPAVMIIVFRQPGANIIETVDNVRALLPQLSTALPAAVGVSVEMDRSP 326

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S +  + T  +  GLV++V+F  +   +  ++   +   +++ T A + LL  +L 
Sbjct: 327 PIRASLAEVERTLILSCGLVILVVFAFLGSLRATVIPAVATVASLVGTFAAMYLLDYSLD 386

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             S+  + +  G  VD  I+V E I        S   +  +G      T+   +++ +  
Sbjct: 387 NLSLMALTIATGFVVDDAIVVLENISRHVEDGLSPREASFLGSREVAFTVVSMSVSLVAV 446

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI----IRYKKMKSIDIN 526
            + + F GG      R FA+ + ++ILIS+  +++    +   +     + +  K     
Sbjct: 447 FIPILFMGGMVGRLFREFAVVLSVAILISLLLSLTSTPMLCAVLLRPHRQPRHEKRFGWT 506

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +   L+               + ++   +  +  +     +  G   +      +   
Sbjct: 507 ARAFGRLLGAYAKSLTFSLSHPRLMLAATVAALAGAVWLYIAIPKGFFPEQDTGRVMGFI 566

Query: 587 RPVDLSVVRS 596
           +    S  ++
Sbjct: 567 QAAPDSSFQA 576



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 45/130 (34%), Gaps = 6/130 (4%)

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+           +      +  +  T     L     +  ++ A+    G+ V+D 
Sbjct: 345 LVILVVFAFLGSLRATVIPAVATVASLVGTFAAMYLLDYSLDNLSLMALTIATGFVVDDA 404

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---I 794
           +VV + +    +     +S R+       E     V  S++     +P+   GG V    
Sbjct: 405 IVVLENI---SRHVEDGLSPREASFLGSREVAFTVVSMSVSLVAVFIPILFMGGMVGRLF 461

Query: 795 GSFAIPMAFG 804
             FA+ ++  
Sbjct: 462 REFAVVLSVA 471



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 92/210 (43%), Gaps = 18/210 (8%)

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
            A ++    ++    E+    +++ +     +     ++   + ++ + I + I + + ++
Sbjct: 820  ALSQAAAAIEASSRELGLPLSVRGSFAGTAQAFASSLKSQPLLLLAALITVYIVLGVLYE 879

Query: 690  WYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI------GYSVNDKVVVYD 742
                 L  ++TL       +     FG++ ++ A+  ++ LI      G  + D  +V +
Sbjct: 880  STVHPLTILSTLPSAGLGAVAALMAFGLDLSIIAIIGIILLIGIVKKNGIMMVDFALVAE 939

Query: 743  RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
            R  +        +S R+ I ++  +     + T++AAF+  LP+A+    G  +     I
Sbjct: 940  R--EE------GLSPREAIYQACLKRFRPIMMTTLAAFLGALPLALGHGAGAELRRPLGI 991

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             +A G++V+ + +++    I L++   R +
Sbjct: 992  AIAGGLLVSQAMTLYTTPVIYLYLDRLRWR 1021


>gi|162456378|ref|YP_001618745.1| cation efflux system transmembrane protein [Sorangium cellulosum
           'So ce 56']
 gi|161166960|emb|CAN98265.1| probable cation efflux system transmembrane protein [Sorangium
           cellulosum 'So ce 56']
          Length = 1155

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 70/613 (11%), Positives = 171/613 (27%), Gaps = 43/613 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R   ++ ++ + +   GL  A      ++ LD  P       I                 
Sbjct: 28  RKRFFIFLVAAALTLFGLFSA-----RRTQLDALPDLSDTQVI---------VATEWMGR 73

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +                         + + + F D         +V   L  
Sbjct: 74  SPTLIEDQVTYPVVTSFLGAPSVKTVRGFTMFGMSFVYVVFKDGTDIYWARSRVVEQLAK 133

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L       +    T             +    +  E            +   E   
Sbjct: 134 VKDSLPEGVTPQIGPDATSVGWVYQY-ALVDESGTHNLQELRSFQDWHLRYWLQGLEGVA 192

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         +   + DP+R++    +  +++      N    G +  +         + 
Sbjct: 193 EVASVGGFEKEYQIQVDPARMKARGVSVGQVAAAVRGANTEVGGRVIEMAQHEYVLRGRG 252

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + ++                      ++ D  G         D             
Sbjct: 253 YVRAREDLD------------------DAVVATDTRGTPIRVRDVADVTVGGNLRRGVAE 294

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    I+        +R         +         +GS   
Sbjct: 295 LDGRGEVVGGIVVMRHGENALHVIDRVKSKLEEVRGSLPAGVKIVPVYDRSELIVGSVKT 354

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                  + G+V++V+F+ + + +  LVA  ++ +    T     +L  ++ + S+AGI+
Sbjct: 355 LSTNLVQILGVVILVIFVFLFHLRSALVAAIALPVATAATFIAFYVLDLSINIMSLAGII 414

Query: 422 LGIGLAVDSNILVNER----IREENRKNQSVFCS--LDMGFSRAYSTIFDSNITALIATV 475
           L +G  VDS  ++ E     I    R+ + +  +  +         ++F + +   IA +
Sbjct: 415 LALGDMVDSACVLVENAHRKIEAAEREGRKIPRAEIVIGAARELGPSMFGALLVLTIAFL 474

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G   R  A+    S+  +   A+++V A+M+  +R +              
Sbjct: 475 PVFTLEGEEGRLFRPLALAKTFSMAFASLFAVTLVPALMVTFLRGRITPEQRNPINRLCI 534

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLL-FTHGLNYGIDFKGGIQLGVLANRPVDL 591
                +    +R R   + +++     ++  +            +G +    +    + +
Sbjct: 535 AAYRPVLRACLRRRGMVIAVAVGLMGATVYPMSRLGSEFMPPLEEGDLLFMPVTVPGIPI 594

Query: 592 SVVRSNLESLQIG 604
           +  R  L      
Sbjct: 595 AEARRLLAWQDAQ 607



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/203 (14%), Positives = 79/203 (38%), Gaps = 11/203 (5%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              LE V+  +   V +  + +   +     + L    +  + +  + + +++   F   
Sbjct: 322 KSKLEEVRGSLPAGVKIVPVYDRSELIVGSVKTLSTNLVQILGVVILVIFVFL---FHLR 378

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR---KNM 748
            AL A   L +    T   F +  +  N+ ++A ++  +G  V+   V+ +      +  
Sbjct: 379 SALVAAIALPVATAATFIAFYVLDLSINIMSLAGIILALGDMVDSACVLVENAHRKIEAA 438

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAF-ISVLPMAVWGGS---VIGSFAIPMAFG 804
           +     I   +++  +  E LG S++ ++    I+ LP+    G    +    A+   F 
Sbjct: 439 EREGRKIPRAEIVIGAARE-LGPSMFGALLVLTIAFLPVFTLEGEEGRLFRPLALAKTFS 497

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
           +  A+  ++ +   +++     R
Sbjct: 498 MAFASLFAVTLVPALMVTFLRGR 520


>gi|304322028|ref|YP_003855671.1| Heavy metal efflux pump CzcA [Parvularcula bermudensis HTCC2503]
 gi|303300930|gb|ADM10529.1| Heavy metal efflux pump CzcA [Parvularcula bermudensis HTCC2503]
          Length = 1037

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 72/654 (11%), Positives = 160/654 (24%), Gaps = 39/654 (5%)

Query: 17  IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVNGFLQMYS 74
           IG L A         +D FP   P               +  E +    + V  ++    
Sbjct: 24  IGGLFA----FRSLPVDAFPDPSPSL-----------VQVFTETEGLSPEEVERYVTYPI 68

Query: 75  DELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNL 134
           +   S L K      +     + I + F D          V   L      +        
Sbjct: 69  ETAMSGLPKVDEIRSTSNFGLSVINIYFEDGTDVYFARQVVGERLGEAADAIPDGFGTPK 128

Query: 135 LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLP 194
           +   +     I+  +   +      +E            +   E   + L       Q  
Sbjct: 129 MGPISTGLGIIMYYRLVDETGERSLVELREIADWMIKYPLQSVEGVTEVLSLGGFEKQYQ 188

Query: 195 GEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHL 254
              DP +L     +  ++       N +       +   + +     L     ++     
Sbjct: 189 VRLDPDQLTSYDLSVGEVIAALESANRTAGAQFIEIGAEQYTVRGVGLARSLDDL----- 243

Query: 255 NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPS 314
                                  G         +                       +  
Sbjct: 244 --------------RETPVKTVDGRTVRVSDLGEVAIGGGVRQGLATANGEGETVAGLVL 289

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
                + +  IE A      +          +           + +         A LV 
Sbjct: 290 KLYGTNTSEVIENAQARFEEINLSLPDGVKAVPYYDQGTLVKKAAATVTTALWQGALLVA 349

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
           +++F+ +   +  LV   +I  +V      +  LG    L ++ G+ + IG+ VD  I++
Sbjct: 350 VIVFLFLGGWRPSLVVVMAIPFSVGFAFIAMKALGIGANLMTLGGVAIAIGMMVDGAIVI 409

Query: 435 NERIR---EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAIT 491
            E +     E R+ +    ++    +   + +  +    +I  + LF   G   + F   
Sbjct: 410 AENVDRGLRERREGEDSRTTVARASAEVIAPLIAAVAVVVIVFLPLFSLQGTEGKTFRPL 469

Query: 492 MGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVG 551
              + L    + I          +   +    +        +        F   R     
Sbjct: 470 AASAALAMTGSLIYAALIAPAMALGLMRPPKSNSQESDSRLVSLIKPLAAFFVRRRLAAV 529

Query: 552 ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNF 611
                 +    L  T   +          + +       +S+  +   S +I     + F
Sbjct: 530 GLAGVLLLVGGLSATRLGSEFTPALEEGDVLLRVTMAPSISLTEAKETSTRIETRLLEAF 589

Query: 612 DGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
               + + R+      + A           +          + + +   IS  L
Sbjct: 590 PEISSIVSRIGRGEVGAHADPVNSIEAFVALKPRSEWRNGISPDELRASISENL 643



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 81/233 (34%), Gaps = 9/233 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++ +++      Q         + +Q         + V +  +   +++   +  +   
Sbjct: 790  ESVANIREIVGPRQITRENGERFITVQLNVRGRDIGSYVADAQQSVASQLDLPAGYRVEW 849

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL-- 713
                ++ +E   +  V + I+   + + + + F    +   I   I  +  T G  AL  
Sbjct: 850  GGQFELQQEANARFAVVIPITLGIVFLILLLTFGRMKSAILILLNI-PLALTGGAMALWL 908

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+  ++ A    + L G ++ + +V+   M    +         +L  ++        +
Sbjct: 909  AGLPISVPATVGFIALFGIALGNGMVLVSFMDDFAREGRGR---DELAVEAAGLRARPVL 965

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             T++   + + P+      G  V    A  +  G+V +   ++ +   +  + 
Sbjct: 966  MTALTTALGLAPLLFASGVGAEVQRPLATVVMGGLVSSTVLTLLVLPALHRWF 1018



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/204 (14%), Positives = 70/204 (34%), Gaps = 14/204 (6%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                  E +   + + V      +   +  K +  +      G ++ A+ + +++    
Sbjct: 301 ENAQARFEEINLSLPDGVKAVPYYDQGTLVKKAAATVTTALWQGALLVAVIVFLFLG--- 357

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  +L  +  +   +          GI  NL  +  V   IG  V+  +V+ + + + +
Sbjct: 358 GWRPSLVVVMAIPFSVGFAFIAMKALGIGANLMTLGGVAIAIGMMVDGAIVIAENVDRGL 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF-------AIPM 801
           +        R  + ++  E +   +       I  LP+    G+   +F       A+ M
Sbjct: 418 RERREGEDSRTTVARASAEVIAPLIAAVAVVVIVFLPLFSLQGTEGKTFRPLAASAALAM 477

Query: 802 AFGIVVAASSSIFIAAPILLFIYD 825
              ++ AA     IA  + L +  
Sbjct: 478 TGSLIYAAL----IAPAMALGLMR 497


>gi|163858893|ref|YP_001633191.1| AcrB/AcrD/AcrF family protein [Bordetella petrii DSM 12804]
 gi|163262621|emb|CAP44924.1| AcrB/AcrD/AcrF family protein [Bordetella petrii]
          Length = 1055

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 65/575 (11%), Positives = 153/575 (26%), Gaps = 46/575 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN +LV+L ++      L A+ N    + +D  P       I                  
Sbjct: 11  NNRFLVLLATLFLFFWGLWAIKN----APIDALPDLSDVQVI---------VRTTYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGYSFFGDSFVYIIFEDGTDLYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    K +L    T                     +           ++       +
Sbjct: 118 QGRLPATAKPSLGPDATGVGWIYEY-ALVDRSGNHDLSQLRGLQDWFLKYELKSVPDVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L     T  ++       N    G +  +            
Sbjct: 177 VASIGGMVKQYQIVIDPIKLAAFGVTQDQVIQAVRASNQEVGGSVLELAEAEYMVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                     + ++    G              P        +
Sbjct: 237 LASLEDFRN------------------IPLAVKSGGTPILLGDVATIQLGPEIRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   ++  +    I         L+A   P    +           +    
Sbjct: 279 NGEGETAGGVVILRSGKNARQAISAVKAKLDELKASLPPGVEIVPTYDRSKLIDRAIENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  S+ L V+    ++   G +  + S+ GI +
Sbjct: 339 TSKLIEEFIVVALVCAIFLWHLRSALVAIISLPLGVLTAFIIMHYQGVSANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            IG  VD+ +++ E   +              + ++ +  +    +     +F S +   
Sbjct: 399 AIGAMVDAAVVMIENAHKHVETWRHEHLGQELRGEAHWRVMANAAAEVGPALFFSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++  +   A+++V  +M + IR +          
Sbjct: 459 LSFIPVFTLQAQEGRLFGPLAFTKTYAMAGAAGLAVTLVPVLMGYWIRGRIPPEEKNPLN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICL 563
                I   +    +R     +  +++  + +I  
Sbjct: 519 RFLIRIYRPLLDAVLRRPRTTLAAALIILLTAIWP 553



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 82/249 (32%), Gaps = 12/249 (4%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            + + L  V           +  +N        + ++ +   SV       + ++   +  
Sbjct: 794  QQITLGTVARIAIENGPPMLKSENARPTGWVYIDVRGRDLASVVSDLRHAVAQQVALKPG 853

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               +         + +  L    ++   +  I +L+Y+  R ++  AL  + TL   +  
Sbjct: 854  MSISFSGQFEYMERATARLT--LVIPATLLIIFVLLYLTFR-RFDEALLIMATLPFALVG 910

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY------DRMRKNMKLYTTSISFRDL 760
             + F  L     ++ A    + L G S    VV+          R++  L  T     D 
Sbjct: 911  GVWFLYLLNYHLSVPAGIGFIALAGVSAEFGVVMLFYLKQAAASRQDSGLSLTPSVLEDA 970

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I +     +     T       +LP+ +    G  ++   A PM  G++ A   S+F+  
Sbjct: 971  IREGAVMRVRPKAMTVAVILAGLLPILLGSGAGSEIMSRIAAPMVGGMITAPLLSMFVIP 1030

Query: 818  PILLFIYDW 826
                 +   
Sbjct: 1031 AAYRLMRGR 1039



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/209 (15%), Positives = 76/209 (36%), Gaps = 12/209 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    L+ +K  +   V +    +   +  +    L  K I   I+ A+   I++W   
Sbjct: 302 SAVKAKLDELKASLPPGVEIVPTYDRSKLIDRAIENLTSKLIEEFIVVALVCAIFLW--- 358

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---- 744
               AL AI +L L +          G+  N+ ++  +   IG  V+  VV+ +      
Sbjct: 359 HLRSALVAIISLPLGVLTAFIIMHYQGVSANIMSLGGIAIAIGAMVDAAVVMIENAHKHV 418

Query: 745 ----RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
                +++       +   ++  +  E      ++ +   +S +P+          F  P
Sbjct: 419 ETWRHEHLGQELRGEAHWRVMANAAAEVGPALFFSLLIITLSFIPVFTLQAQEGRLFG-P 477

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +AF    A + +  +A  ++  +  +  +
Sbjct: 478 LAFTKTYAMAGAAGLAVTLVPVLMGYWIR 506


>gi|152983001|ref|YP_001354743.1| CzcA family heavy metal efflux protein [Janthinobacterium sp.
           Marseille]
 gi|151283078|gb|ABR91488.1| heavy metal efflux pump, CzcA family [Janthinobacterium sp.
           Marseille]
          Length = 1034

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 87/648 (13%), Positives = 190/648 (29%), Gaps = 45/648 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N  +++    ++   G L+AL     ++ +D FP       +   L   GG       
Sbjct: 10  LTNRIFVLAAALLLMVYGTLMAL-----RTPIDVFPDL--NKPLVTVLTEAGGM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   + +              + +   F            V+  L 
Sbjct: 57  -APEEVEQLVSFPVETSLNGMPGVTRVRSVAGVGLSIVYAEFDWGTDIYRNRQLVSERLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L       +   ++     ++L    ID   +  +            ++      
Sbjct: 116 LVKEQLPDGITPIMGPVSSIMG-EVMLIALPIDIAKTDPMRAREYADFVLRPRLLSIPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q +     + QL  E D +R+ Q   T  ++         +  G    +        N 
Sbjct: 175 SQVIPIGGDVRQLRVEPDTARMAQFNVTLEQIESALRGFAANTSGGFIDLNSREYLIRNL 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  +  G+ +               V  +                         D 
Sbjct: 235 GRTNRLEDAKGLAVTYRNGKPVLIDQVATVRFAAAFKRG-------------------DA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +   P +  ++    A  +   T +    L+ + +     +    V  R       S +
Sbjct: 276 GLNGKPAVIVSVQKQPAADTVKLTRDIEAALSELKQGLPEGLSAPEVLFRQADFIEASIN 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                    A LV I+LF  +L  +   ++  +I L++ +T     LLG ++ + ++ G+
Sbjct: 336 NVVEALRDGAILVAIILFAFLLNVRTTAISLIAIPLSLAVTAVAFHLLGQSINVMTLGGL 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            + IG  VD  ++  E I    ++        SV   +        S I  + +  ++  
Sbjct: 396 AIAIGELVDDAVVDVENILRRLKQRSVGDKSLSVMEVIWRASVEVRSGIVYATVIVVLVF 455

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LF      G       I   +SIL SM  +++I   +  +++ + K      +PL   
Sbjct: 456 VPLFALPGIEGRLFAPLGIAYIVSILASMLVSMTITPVLAYYLLPHMKQLQHGDSPLVSR 515

Query: 532 FLIPDCI--AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
               D       F R++      + L    +  + F          +G + +G+      
Sbjct: 516 LKAWDERVLMWSFPRSKMILAVAAFLVVASASTIAFFPRAFLPPFNEGSLVMGMTFTPGT 575

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
            L+         +                 R +         +  +++
Sbjct: 576 SLAEANRMGAMAETLIRQVPEVIKVGRRTGRAELDEHAEGVHSSEIDV 623



 Score = 75.1 bits (182), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 86/251 (34%), Gaps = 8/251 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           +     +PV +  V +   +                 +   +    D+V  TR +E    
Sbjct: 248 VTYRNGKPVLIDQVATVRFAAAFKRGDAGLNGKPAVIVSVQKQPAADTVKLTRDIEAALS 307

Query: 641 KITEIVPLS-TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAIT 698
           ++ + +P   +               I   +  +   AI + I +            ++ 
Sbjct: 308 ELKQGLPEGLSAPEVLFRQADFIEASINNVVEALRDGAILVAIILFAFLLNVRTTAISLI 367

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL---YTTSI 755
            + L +  T   F L G   N+  +  +   IG  V+D VV  + + + +K       S+
Sbjct: 368 AIPLSLAVTAVAFHLLGQSINVMTLGGLAIAIGELVDDAVVDVENILRRLKQRSVGDKSL 427

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGIVVAASSS 812
           S  ++I ++  E     VY ++   +  +P+    G     FA   I     I+ +   S
Sbjct: 428 SVMEVIWRASVEVRSGIVYATVIVVLVFVPLFALPGIEGRLFAPLGIAYIVSILASMLVS 487

Query: 813 IFIAAPILLFI 823
           + I   +  ++
Sbjct: 488 MTITPVLAYYL 498



 Score = 47.4 bits (110), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/238 (11%), Positives = 90/238 (37%), Gaps = 10/238 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ +++ GD   Q         + +      S     + ++        +P +   + E
Sbjct: 787  SSIATVEEGDGPNQIGRENGRRRIVVYANTDGSDMSRIIGDVRAAIAATPMPSAYFVSVE 846

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW-YFALGAITTLILDITKTLGFFALF 714
                   + +     + ++ S   + + ++ R+K    AL  +  +   +  ++    + 
Sbjct: 847  GQFQAQEKAMKLIVGLSLL-SLAMIFLVLYSRYKSGVLALVIMGNIPFALIGSVIAMWIA 905

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
             +  ++ ++   +TL G +  + ++         K    +     ++  S+ E L   + 
Sbjct: 906  DVSLSVASMVGFITLAGIATRNGILKVSHYINLCKFEGEAFGLPMIVRGSL-ERLTPVLM 964

Query: 775  TSMAAFISVLPMAVW----GGSVIGSFAIPMAFGIVVAA-SSSIFIAAPILLFIYDWR 827
            T++ A  ++ P+ +     G  ++   A+ +  G++ +    S+    P++ ++   +
Sbjct: 965  TALVAAFALTPLLLAADAPGKEILHPVAVVIFGGLISSTILDSL--LTPLIFWLVGRK 1020


>gi|103488028|ref|YP_617589.1| heavy metal efflux pump CzcA [Sphingopyxis alaskensis RB2256]
 gi|98978105|gb|ABF54256.1| Heavy metal efflux pump CzcA [Sphingopyxis alaskensis RB2256]
          Length = 1047

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 68/569 (11%), Positives = 146/569 (25%), Gaps = 45/569 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
            + ++  + L+ A    +  + +D  P       I                     V   
Sbjct: 14  FFILLGALALVFAGLWAVRTTPIDALPDLSDTQVI---------IRTSYPGQAPRIVEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  V  +L   
Sbjct: 65  VTYPLTTTMLSVPGAKTVRGYSFFGDSFVYVIFEDGTDLYWARSRVLEYLNQVQGRLPET 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            +  +    T                     +           ++       +      +
Sbjct: 125 ARSAIGPDATGVGWIYEY-ALVDRTGGHDLSQLRSLQDWFLRYELKTIPGVAEVASVGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     DP RL     T A+        N    G +  +            +    + 
Sbjct: 184 VRQYQVVLDPVRLAAYGVTHAQAVEAIRRANQEAGGSVLELAEAEYMVRASGYLRSLAD- 242

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA-PVI 308
                                       G           I     +      L     +
Sbjct: 243 ------------------FRAIPLRTASGGIPVTLGDVATIQLGPEMRRGIADLNGEGEV 284

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +        I       A L+ G       +           +          
Sbjct: 285 AGGIIVLRQGADARSAIMAVEAKLAELKKGLPKGVEVVTTYDRSQLIDHAVENLTHKLIE 344

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              +V +V  + + + +  LVA  ++ L V+    ++ L G    + S+ GI + IG  V
Sbjct: 345 EFIVVALVCALFLWHVRSALVAIVTLPLGVLAAFVVMRLQGINANIMSLGGIAIAIGAMV 404

Query: 429 DSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           D+ I++ E   ++                  + ++          +F S +   ++ V +
Sbjct: 405 DAAIVMIENAHKKIERWEHDHPGEELHGTKRWITITEAAMEVGPALFFSLLIITLSFVPV 464

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G      A T   ++  +   ++++V  +M ++I   K+ S   NP++R    
Sbjct: 465 FTLQAQEGRLFAPLAFTKTYAMAGAAILSVTLVPVLMGWLI-RGKIPSEQANPINRGLTR 523

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICL 563
               AI ++ AR     I       +   
Sbjct: 524 AYRPAIDWVLARPKATLIIAALVFATTAW 552



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 12/243 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L       I+  N +GE    + +  Q  D+ +    +E    ++ + +P      T  
Sbjct: 266 QLGPEMRRGIADLNGEGEVAGGIIVLRQGADARSAIMAVEAKLAELKKGLPKGVEVVTTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
              ++    +      +I   I + +   +       AL AI TL L +        L G
Sbjct: 326 DRSQLIDHAVENLTHKLIEEFIVVALVCALFLWHVRSALVAIVTLPLGVLAAFVVMRLQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL--------IDKSINE 767
           I  N+ ++  +   IG  V+  +V+ +   K ++ +       +L        I ++  E
Sbjct: 386 INANIMSLGGIAIAIGAMVDAAIVMIENAHKKIERWEHDHPGEELHGTKRWITITEAAME 445

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIY 824
                 ++ +   +S +P+          F   A    + +  AA  S+ +   ++ ++ 
Sbjct: 446 VGPALFFSLLIITLSFVPVFTLQAQEGRLFAPLAFTKTYAMAGAAILSVTLVPVLMGWLI 505

Query: 825 DWR 827
             +
Sbjct: 506 RGK 508



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 82/259 (31%), Gaps = 11/259 (4%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +   + + + L  V     S     +  +N        V ++ +   SV       +  
Sbjct: 787  PILTRSGQQITLGTVALLRISDGPPMLKTENGRLSTWVYVDVRGRDLASVVGDIQTAIAG 846

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAIT 698
            +                   +    L     + +  + + + + +++ F ++  AL  + 
Sbjct: 847  QVKLSPGVSIAYSGQFEYLTRAIDRLK----LVIPATLVIIFVLLFLIFGRFDEALLIMA 902

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
            TL   +T       L G   ++      + L G +    VV+   ++  ++         
Sbjct: 903  TLPFALTGGFWLLYLLGYHQSVATGVGFIALAGVAAEFGVVMLIYLKSTLEDRGPDPDMA 962

Query: 759  D---LIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSS 812
                 + +     +     T       +LP  V GG    V+   A PM  G++ A   S
Sbjct: 963  QVESAVREGALLRVRPKAMTVAVIIAGLLPALVGGGAGSEVMSRIAAPMVGGMLTAPLLS 1022

Query: 813  IFIAAPILLFIYDWRAKNA 831
            +F+     L +   +AK  
Sbjct: 1023 MFVIPAAYLLMRQRKAKPN 1041


>gi|310658614|ref|YP_003936335.1| protein-export membrane protein secd [Clostridium sticklandii DSM
           519]
 gi|308825392|emb|CBH21430.1| Protein-export membrane protein SecD precursor [Clostridium
           sticklandii]
          Length = 414

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 134/378 (35%), Positives = 222/378 (58%), Gaps = 28/378 (7%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
              + ++  I+Q++E+ R+R+D +G++E  I + G +RI I+LPG  D  +  + +G TA
Sbjct: 61  AKGEELNKIIDQTIEVFRKRVDGMGLTEPVIVKEGDNRIRIELPGVNDAQQAIETIGKTA 120

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           ++ F                                V +SG  +  A    D + ++P V
Sbjct: 121 QLQFILPD--------------------------GNVVVSGAEVTKADVMIDSRNNQPFV 154

Query: 271 DISFDEMGARRFFEVTR--DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
            + F+  G+++F E TR      +P+ +VLDG V+++P +N+ IP+G+AQ++GNFTIE+A
Sbjct: 155 SLEFNSEGSKKFAEATRSLAPTNEPIFIVLDGEVISSPRVNEEIPNGQAQVTGNFTIESA 214

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
             LA ++RAG+LP+    V+   + A LG +++ K       G++L++LFMI  Y   GL
Sbjct: 215 SELAGLIRAGALPVDFEEVQSSTITATLGEEALDKSIYGASIGILLVMLFMIFYYRLPGL 274

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           VA  ++   V++ +     + ATLTLP IA ++L +G+AVD+N+++ ERI+EE R  +S+
Sbjct: 275 VAAIALVAYVLIVIYTYIGIKATLTLPGIAAMILSVGMAVDANVIIFERIKEEIRSGKSI 334

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             S+D GF +A STI DS IT  IA VVL+ FG G+++GFAIT+ + I+ SMF+AI I R
Sbjct: 335 RVSVDSGFQKAMSTIIDSQITTFIAGVVLYNFGTGSIKGFAITLMIGIMASMFSAIIITR 394

Query: 509 AMMIFIIRYKKMKSIDIN 526
            ++  +I    +K+    
Sbjct: 395 FLLKSVIGISNIKNTKFF 412



 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 31/173 (17%), Positives = 78/173 (45%), Gaps = 4/173 (2%)

Query: 648 LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                 +  +   +  E + K I G  I  + +++++   ++    L A   L+  +   
Sbjct: 229 DFEEVQSSTITATLGEEALDKSIYGASIGILLVMLFMIFYYRLP-GLVAAIALVAYVLIV 287

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +  +        L  +AA++  +G +V+  V++++R+++ ++   +  S R  +D    +
Sbjct: 288 IYTYIGIKATLTLPGIAAMILSVGMAVDANVIIFERIKEEIR---SGKSIRVSVDSGFQK 344

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            +   + + +  FI+ + +  +G   I  FAI +  GI+ +  S+I I   +L
Sbjct: 345 AMSTIIDSQITTFIAGVVLYNFGTGSIKGFAITLMIGIMASMFSAIIITRFLL 397



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/417 (13%), Positives = 116/417 (27%), Gaps = 30/417 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M+     + +  ++   G      N L    +   P      +I+ GLDL+GG  +V E 
Sbjct: 1   MKFKNVSLFILIILVIAGFSFTAINGLNIGNIKLSP---VGTQINQGLDLKGGVFVVYEA 57

Query: 61  DED---DFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVT 116
             D   + +N  +    +  R  +   G+    + ++  N+I +        +   + + 
Sbjct: 58  KTDAKGEELNKIIDQTIEVFRKRVDGMGLTEPVIVKEGDNRIRIELPGVNDAQQAIETIG 117

Query: 117 LFLQG--VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
              Q   +    NV      +        S         +  S   ++  E  R      
Sbjct: 118 KTAQLQFILPDGNVVVSGAEVTKADVMIDSRNNQPFVSLEFNSEGSKKFAEATRSLAP-- 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             +E     L    I      E+ P+   Q+ G     S  ++               ++
Sbjct: 176 -TNEPIFIVLDGEVISSPRVNEEIPNGQAQVTGNFTIESASELAGLIRAGALPVDFEEVQ 234

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
            S     L E+ ++ S                   + +    M            I    
Sbjct: 235 SSTITATLGEEALDKS------------IYGASIGILLVMLFMIFYYRLPGLVAAIALVA 282

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            V++             +P   A I        A ++        +    +I    + G 
Sbjct: 283 YVLIVIYTYIGIKATLTLPGIAAMILSVGMAVDANVIIFERIKEEIRSGKSIRVSVDSGF 342

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                +I           V+      +     G +  F+I L + +  ++ S +  T
Sbjct: 343 QKAMSTIIDSQITTFIAGVV------LYNFGTGSIKGFAITLMIGIMASMFSAIIIT 393


>gi|307747932|gb|ADN91202.1| RND pump protein [Campylobacter jejuni subsp. jejuni M1]
          Length = 1005

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 152/542 (28%), Gaps = 50/542 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++ +  +   GL+ A    +        P     ++++      G  + V     
Sbjct: 8   RPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIKITSKVN------GDLNFV----- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S +        +     +   + F   +  E  A+ V   +  +
Sbjct: 57  ----ESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAANDVRDKIGTL 112

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L   P+   + + +   IS+ L            ++   EI  +    +   E   +
Sbjct: 113 --SLPSKPEIEKISSDSGSAISLFLY-------SKDKLQLMREINDKIKPFLQRVEGVGK 163

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  E  P+ LR+       ++      N  +                 + 
Sbjct: 164 IEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYIIKGYFE 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  E+S + +                            F     NI           +
Sbjct: 224 ATNLEELSNLRIKT------------------------GVFLSDIANISSLYEDEKQSAL 259

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    I+       +L           +            S  
Sbjct: 260 YEGKEGVLLELGKITNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQV 319

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L L+++F+ +      L+A  +I  ++I T  ++ LLG  L   +   + L
Sbjct: 320 IFDMVLGIFLTLVIVFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTL 379

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLD--MGFSRAYSTIFDSNITALIATVVLFFF 480
            IG+ +D  I+V E I ++ +    +  +         +  +I    +   I    +   
Sbjct: 380 SIGIFIDDAIVVIENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSI 439

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G       I++   I+IS   ++ ++ ++    +  K+ K  +        +      +
Sbjct: 440 SGLFFNALGISVASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENL 499

Query: 541 QF 542
            +
Sbjct: 500 LY 501



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 7/200 (3%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                      V   +     +I    +I         I + L +     V+   + ++I
Sbjct: 274 TNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVI 333

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                      L A   +   I  T     L G + N     A+   IG  ++D +VV  
Sbjct: 334 VFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI- 392

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +N+     +          INE     +  S+      +P++      G    +  I
Sbjct: 393 ---ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGI 449

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +A GIV++   S+F+   I
Sbjct: 450 SVASGIVISFLVSVFLIPSI 469



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 93/256 (36%), Gaps = 9/256 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +++  S++                KN  V++     D         ++    
Sbjct: 747 ISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQKLLLDNMD 806

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             +    ++         +  E ++   + V ++ + + + +   ++ +   L  + T+ 
Sbjct: 807 KILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFILPLIIMITMP 866

Query: 702 LDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           L     ++G F + G  F+L  + A++ L G    + +++ D      K     +     
Sbjct: 867 LAFGGASIGLF-ITGHNFSLFVLIAIILLFGMVGKNAILLVDVAN---KKCHEGLDPDKA 922

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  +    L   + T+ A   ++LP+A+    G       AI + FG++ +   ++ +  
Sbjct: 923 LLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLISSTLLTLLVVP 982

Query: 818 PILLFIYDWRAKNARI 833
            +  F +   +K  +I
Sbjct: 983 ALFKFCFKLDSKLRKI 998


>gi|299534323|ref|ZP_07047666.1| heavy metal efflux pump, CzcA family protein [Comamonas
           testosteroni S44]
 gi|298717686|gb|EFI58700.1| heavy metal efflux pump, CzcA family protein [Comamonas
           testosteroni S44]
          Length = 607

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/534 (11%), Positives = 146/534 (27%), Gaps = 48/534 (8%)

Query: 3   NNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            N +LV++  + +  +G+  A      ++ +D  P       I                 
Sbjct: 11  TNRFLVLIATAFLVAVGIWSA-----SRTPVDALPDLSDVQVI---------VRTTYPGK 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  PPQVVEDLVTYPLTTTMLSVPGAKTVRGYSFFGDSFVYILFDDKTDPYWARSRVVEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L V     L    T                 +   +           ++       
Sbjct: 117 VQSRLPVGATAALGPDATGVGWVYEY-ALVDRSGHNDIGQLRALNDWFLKFELKTVPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     DP R+R L  T + +                          NQ 
Sbjct: 176 EVASIGGMVRQYQVVLDPDRMRTLAITQSMVVQALQK-------------------ANQS 216

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                VE++       +  F                               P        
Sbjct: 217 SGGSVVEMAETEYMVRSRGFLQSLEDFRTIPITLSGATPVLLRDVAIVQIGPEMRRGIAE 276

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +   TIE        L+         +           +   
Sbjct: 277 LDGEGEVTGGVVVMRSGKNARATIEAVKARLETLKPSLPKGVEVVETYDRSKLIDRAVDN 336

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        +V +V  + + + +  LVA  ++ + V+    ++   G +  + S+ G+ 
Sbjct: 337 LRVKLLEEFAVVAVVCAIFLFHLRSALVAVVTLPIGVLAAFGVMHWQGVSANILSLGGVA 396

Query: 422 LGIGLAVDSNILVNERIREE-----NRKNQSVFCS-----LDMGFSRAYSTIFDSNITAL 471
           + +G  VD+++++ E   +       R  +    +     +          +F S +   
Sbjct: 397 IALGAMVDASVVLVEAAHKHLEHFEERHGRPPSVAERWELIAQSAVEVGPALFFSLLVIT 456

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           ++ + +F      G      A T   ++  +   ++++V  +M ++IR +  K 
Sbjct: 457 LSFLPVFTLEAQEGRLFSPLAFTKTYAMAAAAGLSVTLVPVLMGYLIRGRIPKE 510



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 77/233 (33%), Gaps = 17/233 (7%)

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
              G    +   +       A    LE +K  + + V +    +   +  +    L  K 
Sbjct: 282 EVTGGVVVMRSGKNARATIEAVKARLETLKPSLPKGVEVVETYDRSKLIDRAVDNLRVKL 341

Query: 670 I--VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
           +    V+    A+ +     F    AL A+ TL + +    G     G+  N+ ++  V 
Sbjct: 342 LEEFAVVAVVCAIFL-----FHLRSALVAVVTLPIGVLAAFGVMHWQGVSANILSLGGVA 396

Query: 728 TLIGYSVNDKVVVYDRMRK--NMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAF 780
             +G  V+  VV+ +   K                   +LI +S  E      ++ +   
Sbjct: 397 IALGAMVDASVVLVEAAHKHLEHFEERHGRPPSVAERWELIAQSAVEVGPALFFSLLVIT 456

Query: 781 ISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +S LP+          F   A    + +  AA  S+ +   ++ ++   R   
Sbjct: 457 LSFLPVFTLEAQEGRLFSPLAFTKTYAMAAAAGLSVTLVPVLMGYLIRGRIPK 509


>gi|300313716|ref|YP_003777808.1| cobalt-zinc-cadmium resistance cation efflux system transmembrane
           protein [Herbaspirillum seropedicae SmR1]
 gi|300076501|gb|ADJ65900.1| cobalt-zinc-cadmium resistance cation efflux system transmembrane
           protein [Herbaspirillum seropedicae SmR1]
          Length = 1073

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 61/601 (10%), Positives = 149/601 (24%), Gaps = 62/601 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L  +      + +      +  +D  P                   + +      
Sbjct: 13  RWLVLLAVLGMGAYGVYS----YQKLPIDAVPDITN-------------VQVQINTSAPG 55

Query: 65  FV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +    + L S L          R   +++T+ F D          V   +Q
Sbjct: 56  YSPLEAEQRISYPIETLMSGLPNLEQVRSLSRYGLSQVTVIFKDGTDIYFARQLVNERIQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQI 174
              S+L       +   +T      + +  + D           A +           Q+
Sbjct: 116 LARSQLPPGIDPGMGPISTGLGEIYLWTVESRDDARKPDGTPYTATDLREIQDWVIKPQL 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
            +     +         +        +L     T   +       N++        R  +
Sbjct: 176 RLVPGVTEINTIGGFAKEYLVAPSAEKLASYGMTMDTIIKALEKNNSNVGAGYIERRGEQ 235

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                   V    +I                     +I    +            +    
Sbjct: 236 YLIRAPGQVASIDDIG--------------------NIVLANVKGVPIRIRDVAEVEIGR 275

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          +        
Sbjct: 276 ELRTGAATENGREVVLGTVFMLIGENSRKVSQAVARKMEEINRSLPKGVEAVTVYDRTVL 335

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ VLF+ +   +  ++    I L ++ T   +     +  L
Sbjct: 336 VDKAIATVKKNLVEGALLVVAVLFVFLGNIRAAIITAMVIPLAMLFTFTGMVSNKVSANL 395

Query: 415 PSIAGIVLGIGLAVDSNILVNERI-----REENRKNQSVFCS-----LDMGFSRAYSTIF 464
            S+  +  GI   +D  +++ E         +    +++  S     +      A   + 
Sbjct: 396 LSLGALDFGII--IDGAVVIVENCVRRLAHAQAHHGRTLTRSERFHEVFAAAKEARRPLI 453

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +  +I  + +F      G      A T+  +++ +M  +++ + A +   I  K  +
Sbjct: 454 FGQLIIMIVYLPMFALTGVEGKMFTPMAFTVVAALIGAMILSVTFIPAAIALFIGEKVAE 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +I  L    L    +                L  +C +              +G + +
Sbjct: 514 KENILMLWAKRLYEPMLKTIMENKPVVLTFAGALILVCGVVASRLGSEFVPSLNEGDMAI 573

Query: 582 G 582
            
Sbjct: 574 Q 574



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 78/218 (35%), Gaps = 9/218 (4%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             + SL I     Q    +    + +            V E  ++  + +   +    T  
Sbjct: 810  EVASLTIAPGPNQISREDGKRRIVVSANVRGRDLGGFVAEAERQLQSAVKVPAGYWTTWG 869

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF-- 714
               +  +   ++  + + ++ + + + ++  F      G +    +    T G  AL   
Sbjct: 870  GQFENLQSATQRLQIVIPVALLMVFVLLFAMFSNVKD-GLLVFTGIPFALTGGILALAMR 928

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  +++A    + L G +V + +V+   +R    L     +    I +     L   + 
Sbjct: 929  GIPMSISAAVGFIALSGVAVLNGLVMISFIR---SLREEGRTLDAAIHEGAMTRLRPVLM 985

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
            T++ A +  +PMA+    G  V    A  +  GI+ + 
Sbjct: 986  TALVASLGFVPMALATGTGAEVQRPLATVVIGGILSST 1023



 Score = 40.8 bits (93), Expect = 0.91,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 13/165 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V  + + + +          A+  IT +++ +     F  +   + +   ++      G 
Sbjct: 348 VEGALLVVAVLFVFLGNIRAAI--ITAMVIPLAMLFTFTGMVSNKVSANLLSLGALDFGI 405

Query: 733 SVNDKVVVYD----RMRKNMKLYTTSISFRDL---IDKSINETLGRSVYTSMAAFISVLP 785
            ++  VV+ +    R+      +  +++  +    +  +  E     ++  +   I  LP
Sbjct: 406 IIDGAVVIVENCVRRLAHAQAHHGRTLTRSERFHEVFAAAKEARRPLIFGQLIIMIVYLP 465

Query: 786 MAVWGGSVIGSF---AIPMAFGIVVAASSSI-FIAAPILLFIYDW 826
           M    G     F   A  +   ++ A   S+ FI A I LFI + 
Sbjct: 466 MFALTGVEGKMFTPMAFTVVAALIGAMILSVTFIPAAIALFIGEK 510


>gi|109898707|ref|YP_661962.1| CzcA family heavy metal efflux protein [Pseudoalteromonas atlantica
           T6c]
 gi|109700988|gb|ABG40908.1| heavy metal efflux pump, CzcA family [Pseudoalteromonas atlantica
           T6c]
          Length = 1045

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/667 (11%), Positives = 175/667 (26%), Gaps = 44/667 (6%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQM 72
           ++  +GL       L  + +D  P       I                     V   +  
Sbjct: 22  IMVGMGLFS-----LKHTPVDAIPDLSDVQVI---------IKTSYPGQTPQVVEDQVTY 67

Query: 73  YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKK 132
                   +              + + + F D         +V  +L  V+  L    K 
Sbjct: 68  PLTTAMLSVPGATTVRGFSFFGDSYVYVIFNDDTDPYWARTRVLEYLSQVSPNLPSQAKP 127

Query: 133 NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQ 192
            L    T      +      +       E           ++       +      ++ Q
Sbjct: 128 QLGPDATGVGWVYIY-ALKDESGQHDLSELRALQDWFLKFELQTVPGISEVAAIGGMIKQ 186

Query: 193 LPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGI 252
                DP++LR      + +       N      +  +            V+ + ++   
Sbjct: 187 YQVVVDPNKLRAYNIPLSLIQTAIQQGNQEVGASVVEMAEAEYLVSINGYVQQRDDL--- 243

Query: 253 HLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAI 312
                            + +  ++ G              P        +     +   I
Sbjct: 244 ---------------ARIPLGVNKQGVPVLLRDVASIALGPQMRRGIAELNGEGEVVGGI 288

Query: 313 PSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGL 372
              +   +   TIE       +L+ G       +           + +           +
Sbjct: 289 AVMRFGENAQKTIEAFKAKLEVLKQGLPAGVEVVPVYDRSELINSAVTHLWSKLLEELLI 348

Query: 373 VLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNI 432
           V +V  + + + +  LVA  S+ L +++   ++   G    + S+ GI + IG   D  I
Sbjct: 349 VGLVCALFLFHVRSSLVAIVSLPLGILVAFVIMYWQGINANIMSLGGIAIAIGAMTDGAI 408

Query: 433 LVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAV 485
           ++ E + +  +     + + +  +    S     +F S +   ++ + +F      G   
Sbjct: 409 VMIENMHKHMQDTPLTDANRWDIVAKSASEVGPALFFSLLIITVSFLPVFMLEAQEGRMF 468

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
              A T   ++  S   AIS+V  +M ++IR K +             +        +  
Sbjct: 469 APLAFTKTYAMAASAGLAISVVPVLMGYVIRGKVISEHRNPINRGLVALYMPALKTVLGY 528

Query: 546 RFWGVGISILFSICSICLL-FTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
               +  + + ++     L            +G +         + +   R  L+     
Sbjct: 529 PKTTLVAAGMITLVGFYPLKHIGSEFMPPLDEGDLMYMPSTYTGISIGKAREILQQ---T 585

Query: 605 DISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRE 664
           D   +     KN   ++      +      +     +             + +   +   
Sbjct: 586 DKLIRTVPEVKNVFGKIGRADTATDPAPLTMIETFIQFKPKSEWREGMIKDDIRHALDDA 645

Query: 665 LIRKGIV 671
           L   GI 
Sbjct: 646 LQLPGIT 652



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 14/164 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I+  +  L      F    +L AI +L L I          GI  N+ ++  +   IG 
Sbjct: 347 LIVGLVCAL----FLFHVRSSLVAIVSLPLGILVAFVIMYWQGINANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDL-----IDKSINETLGRSVYTSMAAFISVLPMA 787
             +  +V+     +NM  +       D      + KS +E      ++ +   +S LP+ 
Sbjct: 403 MTDGAIVMI----ENMHKHMQDTPLTDANRWDIVAKSASEVGPALFFSLLIITVSFLPVF 458

Query: 788 VWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +        FA P+AF    A ++S  +A  ++  +  +  +  
Sbjct: 459 MLEAQEGRMFA-PLAFTKTYAMAASAGLAISVVPVLMGYVIRGK 501



 Score = 38.5 bits (87), Expect = 5.3,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 51/150 (34%), Gaps = 15/150 (10%)

Query: 691  YFALGAITTLILDITKTLGFFALFGIEFNLTAVA--AVLTLIGYSVNDKVVVYDRMRKNM 748
             FA  AI    L +    G + L+  ++NL+       + L G +V   V++   + +  
Sbjct: 886  RFAEVAIILGTLPLAMIGGVWLLYLAQYNLSVAVGVGFIALAGVAVEIGVIMLVYLNQAY 945

Query: 749  ----------KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
                        + T    R+ +       +   + T     I +LP+      G  V+ 
Sbjct: 946  AQLQINAARDAKHITLTDLRESVIHGAGLRVRPVMMTVATIVIGLLPVMYASGTGSEVMS 1005

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              A PM  G+  A   S+ +   +      
Sbjct: 1006 RIAAPMVGGMASALILSLLVVPVVYFLWRK 1035


>gi|240949719|ref|ZP_04754054.1| acriflavine resistance protein [Actinobacillus minor NM305]
 gi|240295977|gb|EER46653.1| acriflavine resistance protein [Actinobacillus minor NM305]
          Length = 1039

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 58/560 (10%), Positives = 159/560 (28%), Gaps = 38/560 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V +  +I  +GL       + +  +  +P                   +     
Sbjct: 9   KRPVLAVCISLLITILGL-----QSISKLQVREYPEMTVSVVT---------VSVNYSGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +   +   +    +E  +          S      K+T+    +   +     ++  +  
Sbjct: 55  DASLMQALVTSQIEEAVAQADNIDYVTSSSSPSTTKVTIKMKLNTNPQMALADISAKVNA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + S L        +  ++    +++  +   +++     + +  I R    Q        
Sbjct: 115 IRSNLPSGIDDPSISVSSGSNDALMYIRFVSNEL--STPQITDYINRVVKPQFFTVNGVS 172

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP ++     + A++       N +         +    +  + 
Sbjct: 173 SVDIFGAANFGLRIWLDPDKMAGNNLSGAQVLSALSSNNLNTAAGNANGYYTVYKNKVES 232

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 E+  + ++                        R         +           
Sbjct: 233 STPSVEELENVTIST-------------------TSDGRIIKLKDVATVELDKYQDASRT 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           V           S     +     +    +  +++          +      +   S + 
Sbjct: 274 VADGKEAVVLAVSAATTANSLTVAKNIYPVFELIQKNLPDSVSGQIMYDKTISINSSINE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T      +VL+V+ + +   +  +V   +I +++I  L LL ++G ++ L ++  +V
Sbjct: 334 VIKTIFEATVIVLVVIVLFLGSLRAMVVPIITIPISLIGALFLLQMMGFSINLLTLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L IGL VD  I+V E +    ++ +S F +  +G       +    +        +    
Sbjct: 394 LAIGLVVDDAIVVLENVERHVKEGKSPFDAAIIGTREIAVPVISMTVALGAVYSPMALME 453

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   + FA+T+  ++ IS   A+++   M   +++    +           ++    
Sbjct: 454 GVTGSLFKEFALTLAGAVFISGIAALTLSPMMSSRVLKEHNHEDESRFARCINGMLDKMT 513

Query: 539 AIQFMRARFWGVGISILFSI 558
           +      R        +   
Sbjct: 514 SCYTNMLRGVMSVRWFMLIF 533



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 83/797 (10%), Positives = 212/797 (26%), Gaps = 59/797 (7%)

Query: 60   VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKE--NIADKVTL 117
            V      +G +    D     L K      ++   +  + L+ + +       +A  +  
Sbjct: 243  VTISTTSDGRIIKLKDVATVELDKYQDASRTVADGKEAVVLAVSAATTANSLTVAKNIYP 302

Query: 118  FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
              + +   L       ++   T    S +                  E+I+   +   I 
Sbjct: 303  VFELIQKNLPDSVSGQIMYDKTISINSSI-----------------NEVIKTIFEATVIV 345

Query: 178  ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               I         + +P    P  L   L     M F   L          G+    D  
Sbjct: 346  LVVIVLFLGSLRAMVVPIITIPISLIGALFLLQMMGFSINLLTLLALVLAIGLVV--DDA 403

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                   ++    G     A      +   P V      +GA        + +   L   
Sbjct: 404  IVVLENVERHVKEGKSPFDAAIIGTREIAVP-VISMTVALGAVYSPMALMEGVTGSLFKE 462

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                +  A  I+       + +  +  ++          A  +   L+ +         G
Sbjct: 463  FALTLAGAVFISGIAALTLSPMMSSRVLKEHNHEDESRFARCINGMLDKMTSCYTNMLRG 522

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIV-----------LYGKWGLVADFSIFLNVILTLALLS 406
              S+         G+   +  ++                 G+ +  +         A   
Sbjct: 523  VMSVRWFMLIFAVGVFATLPILLSSLSSEVAPTEDRGFVVGIGSGPANTNLDYTQAATAK 582

Query: 407  LLGATLTLPSIAGIVLGIGLAVDSNILVN-------ERIREENRKNQSVFCSLDMGFSRA 459
                   +P +A ++   G    ++ L         ER RE       V           
Sbjct: 583  FNEEVGKIPEVAAMMTISGFNGTNSALSIISLKDWSERTRERAAITADVAAIAKKVVPMD 642

Query: 460  YSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA--ISIVRAMMIFIIRY 517
             + I    I+   + +        +     +       +    A       ++ +     
Sbjct: 643  INAIAFPEISTGESGLPFSLVITTSDNYAKLADVAGNFLKKAQASGQFFFASLDLKFNTV 702

Query: 518  KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
                  D   +  + +    ++          +   +     +  ++     N  ++   
Sbjct: 703  TMKWKFDREKMGTYGVTMQQVSNTLGAYLSGAIITRVDIDSRAYPIVSQAVRNDRLNPDD 762

Query: 578  GIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
              +  V       + +       L     S +         +          A       
Sbjct: 763  LTKFYVTTATGESIPLSSFVTLELSTEPASLERMSQLNAATISGVVSGSIGDAVNWAKAE 822

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGA 696
            +   +++         +     + +  ++   +     + I + + + I+F+ W   +  
Sbjct: 823  LDNSLSQGYQYDFRSESRQYVQEGNAMVMTFAL-----AVIIIYLVLAIQFESWRDPMVI 877

Query: 697  ITTLILDITKTLGFFALFGI------EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            + ++ L ++  L    L G+        N+ +   ++TL+G      +++ +  ++    
Sbjct: 878  LVSVPLAVSGALLTMNLLGLMKNPGATLNIYSQVGLVTLVGLITKHGILMCEVAKEE--Q 935

Query: 751  YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVV 807
                +S  + I  +    L   + T+ A    ++P +   G   I  F++ M    G+ +
Sbjct: 936  LNHGLSRFEAIVHAATIRLRPIMMTTAAMIAGLVPLLFASGPGAIARFSMGMVIIAGLGI 995

Query: 808  AASSSIFIAAPILLFIY 824
                ++F+   I  F+ 
Sbjct: 996  GTMFTLFVLPVIYTFLG 1012


>gi|78063278|ref|YP_373186.1| CzcA family heavy metal efflux protein [Burkholderia sp. 383]
 gi|77971163|gb|ABB12542.1| Heavy metal efflux pump, CzcA family [Burkholderia sp. 383]
          Length = 1070

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 62/600 (10%), Positives = 149/600 (24%), Gaps = 62/600 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L         + +      +  +D  P                   + +      
Sbjct: 13  RWLVMLAIAAVAALGVFS----YQKLPIDAVPDITN-------------VQVQINTSAPG 55

Query: 65  FV----NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +        +    + + + L          R   +++T+ F D          V   +Q
Sbjct: 56  YSPLEAEQRITYPVETVMAGLPGLEQTRSISRYGLSQVTVIFKDGTDIYFARQLVNERIQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV------ISHAIEQSMEIIRQRIDQI 174
               KL       +  T+T      + +                A +           Q+
Sbjct: 116 EAKDKLPAGIAPAMGPTSTGLGEIYLWTVEADANARKPDGTRYTAADLRELQDWVIRPQL 175

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +       + +     +P++L     T A +       N++        R  +
Sbjct: 176 RNVRGVTEVNSIGGYVKEYRVAPNPAKLMSYGLTLADVVRALERNNDNVGAGYIEKRGEQ 235

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
                        +I                     +I    +G           +    
Sbjct: 236 YLVRVPGQARTVDDI--------------------ANIVLTNVGGVPVRMKDVGLVDIGR 275

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +          I        
Sbjct: 276 ELRTGAATSDGEEVVLGTVFMLMGENSRTVAKAVAAKMEDVNRTLPSGVKAIPVYDRTVL 335

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ VLF+ +   +  L+    I L++++T   +     +  L
Sbjct: 336 VEKAVATVKKNLLEGAILVIAVLFLFLGNMRAALITALVIPLSMLMTFTGMVNAKVSANL 395

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIF 464
            S+  +  GI   VD  +++ E         Q+           F  +      A   + 
Sbjct: 396 MSLGALDFGII--VDGAVVIVENCVRRLAHAQTAAGRPLTRDERFAEVFGASQEARRALI 453

Query: 465 DSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
              +  ++  + +F      G      AIT+ +++  +M   ++ + A +   I  +  +
Sbjct: 454 FGQLIIMVVYLPIFALTGVEGKMFHPMAITVVMALAAAMVLTVTFIPAAVALFIGERVEE 513

Query: 522 SIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
             +             +A    R     +G  ++                    +G + +
Sbjct: 514 KENRLMGWARRAYEPALAAFMTRPARVMIGAGVIVLATLGLATRLGSEFIPSLNEGDLAV 573



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 82/229 (35%), Gaps = 7/229 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L ++ +     Q    +    V +          + V +  +    ++   +    + 
Sbjct: 814  AELATIDVAPGPNQISREDGKRRVVVSANVRGRDVGSFVADARELLQQDVRVPAGYWVSW 873

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  +    +  + V ++   + + +++ F      L   T +   ++  +    L 
Sbjct: 874  GGQFEQLQSASERLKLVVPLALFMVFVLLFVMFNNVKDGLLVFTGIPFALSGGVVSLWLR 933

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  ++TA    + L G +V + +V+   +R    L    +     + +     L   + 
Sbjct: 934  GIPLSITAAVGFIALSGVAVLNGLVMISFIR---NLRDEGMPLEAAVREGALTRLRPVLM 990

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
            T++ A +  LPMA     G  V    A  +  GI+ + + ++ +   + 
Sbjct: 991  TALVASLGFLPMAFATGTGAEVQRPLATVVIGGILSSTALTLLVLPVLY 1039



 Score = 40.4 bits (92), Expect = 1.4,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + +          AL     + L +  T        +  NL ++ A+    G 
Sbjct: 348 LEGAILVIAVLFLFLGNMRAALITALVIPLSMLMTFTGMVNAKVSANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS-------VYTSMAAFISVLP 785
            V+  VV+ +   + +    T+       D+   E  G S       ++  +   +  LP
Sbjct: 406 IVDGAVVIVENCVRRLAHAQTAAGRPLTRDERFAEVFGASQEARRALIFGQLIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    AI +   +  A   ++ FI A + LFI +    K  R+
Sbjct: 466 IFALTGVEGKMFHPMAITVVMALAAAMVLTVTFIPAAVALFIGERVEEKENRL 518


>gi|254525185|ref|ZP_05137240.1| heavy metal efflux pump, CzcA family [Stenotrophomonas sp. SKA14]
 gi|219722776|gb|EED41301.1| heavy metal efflux pump, CzcA family [Stenotrophomonas sp. SKA14]
          Length = 1039

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/557 (11%), Positives = 146/557 (26%), Gaps = 49/557 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L  +M+   G+       +  + +D  P       I                  
Sbjct: 12  NRFLVLLATAMLTAWGVW-----GVRSTPVDALPDLSDVQVI---------IRTNYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGFSFFGDSFVYVLFEDGTDLYWARSRVIEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L    K  L    T                 +   +           ++    +  +
Sbjct: 118 QGRLPATAKPALGPDATGVGWIFQY-ALVDRTGENDLAQLRALQDWFLKFELKSLPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L     + A++                          NQ  
Sbjct: 177 VASVGGMVKQYQVVLDPIKLASYGLSQAQVRDAL-------------------MGANQET 217

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               +E+SG       + +     +          G              P        +
Sbjct: 218 GGSVLELSGAEYMVRASGYLKTLDEFREIPLTARGGVPVRLGDVATLQIGPEMRRGIAEL 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI       A L+    P    +           +    
Sbjct: 278 DGEGEVAGGVVVLRSGKNAQETIAAVKAKLAELQGSLPPGVEIVTTYDRSALIERAIRNL 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  S+ L V+    ++   G    + S+ GI +
Sbjct: 338 TTKLGEEFLVVALVCALFLWHLRSALVAIISLPLGVMTAFLVMRYQGINANIMSLGGIAI 397

Query: 423 GIGLAVDSNILVNERIR-----------EENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            +G  VD+ +++ E              ++  + +  +  +          +F S +   
Sbjct: 398 AVGAMVDAAVVMIENAHKKLEAWQHAHLDQRLQGKERWDVITQAAEEVGPALFFSLLIIT 457

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++  +   +++++  +M + IR +          
Sbjct: 458 LSFIPVFTLEAQEGRLFGPLAFTKTYAMAAAAGLSVTLIPVLMGYWIRGRIPDEQKNPIT 517

Query: 529 SRFFLIPDCIAIQFMRA 545
                         +R 
Sbjct: 518 RILIAAYRPALEWVLRR 534



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 90/282 (31%), Gaps = 14/282 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L  V     +     +  +N     
Sbjct: 762  LARFPINLRYAREWRDSPQRLAELPIFTPMGQQITLGTVARIAITDGPPMLKSENARPSG 821

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V ++ +   SVA      + ++   E     T         + +  L     V V  
Sbjct: 822  WVYVDVRGRDLASVANELRDAIGQQVKLEPGVSITYSGQFEYMERANARLK----VVVPA 877

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + + +++ F +   A   + TL   +T  + F  L     ++      + L G + 
Sbjct: 878  TLLIIFVLLYLTFARVDEAGLIMATLPFALTGGIWFLYLLNYNLSIATGVGFIALAGVAA 937

Query: 735  NDKVVVYDRMRKNM------KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
               VV+   +++ +      +   T     D I +     +     T       ++P+  
Sbjct: 938  EFGVVMLIYLKQALAERCPDRREPTREELLDAIREGAVLRVRPKAMTVAVILAGLVPIVW 997

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                G  V+   A PM  G+V A   S+F+     L +   R
Sbjct: 998  SSGTGSEVMSRIAAPMLGGMVTAPLLSLFVIPAAYLLMRKPR 1039


>gi|326796744|ref|YP_004314564.1| heavy metal efflux pump, CzcA family [Marinomonas mediterranea
           MMB-1]
 gi|326547508|gb|ADZ92728.1| heavy metal efflux pump, CzcA family [Marinomonas mediterranea
           MMB-1]
          Length = 1039

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/591 (11%), Positives = 166/591 (28%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN ++V+L + I     L +L N    + +D  P       I                  
Sbjct: 11  NNRFMVLLATFILVGAGLYSLKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F +         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLSVPGAQTVRGYSFFGDSYVYVIFDEDTDMYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  + +  L    T      +          +   +           ++       +
Sbjct: 118 APSLPSNARAQLGPDATGVGWVYLY-ALIDKTGQNDLSQLRSLQDWFLKYELQTVPGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
            +    ++ Q     +P +LR L    + +       N      +  +            
Sbjct: 177 VVPIGGMVKQYQVSVNPDKLRALNMPLSHIQNAIKRGNQEVGASVIEMAEAEYMVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +I                   ++ +   E G     +   D    P        +
Sbjct: 237 IQSVEDIE------------------MIPLGVSESGTPLTIKDVADVGIGPQMRRGLADL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    +   +   +   TIE        L++        +      G    +    
Sbjct: 279 NGKGETVGGVVVMRFGENAQKTIEGVKAKLDSLKSSLPKGVEVVTVYDRSGLIDRAVENL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  S+ + ++    ++ L G    + S+ GI +
Sbjct: 339 WTKLLEEFLVVALVCVVFLFHVRSSLVAIISLPVGILTAFIVMHLQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREEN----RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG  +D  I++ E + +         ++ +  +    +     +F S +   ++ V +F
Sbjct: 399 AIGAMIDGAIVMIENLHKHMEKVEMTKENRWQIVAAAAAEVGPALFFSLLIITVSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AI++V  +M + +R K +             + 
Sbjct: 459 TLESQEGRMFGPLAYTKTYAMAASAALAITLVPVLMGYFVRGKVLPEHKNPVNRALVAVY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    +      + ++I      +  L   G  +  +   G  + +  +
Sbjct: 519 MPVLKAVLSFPKTTILMAIAIFAIGMWPLNKLGSEFIPNLDEGDLMYMPTS 569



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 81/289 (28%), Gaps = 20/289 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I + +        +    + +       + L  +           +  +N     
Sbjct: 756  LERYPINVRYPQEYRDSPEQLALLPIVTPNGLRIALGDIADVYVEEGPPGLKSENARLNG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V ++        +     + ++                   +   +L       V+ 
Sbjct: 816  WTFVDIEGVDIGRYVENAQKIVAEQVQLPAGYSLNWSGQYEYMQRAKEKLTY-----VVP 870

Query: 676  SAIAMLIYIWIRFKWYFALGAIT--TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
              +A++I +       F+  AI   TL   +  ++    L G  F++      + L G +
Sbjct: 871  LTLAIIIVLLYINFRNFSEVAIIMGTLPFAMVGSIWLMYLSGFNFSVAVGVGFIALAGVA 930

Query: 734  VNDKVVVY----------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
            V   V++            R      +     +    +       +   + T+ A  I +
Sbjct: 931  VEIGVIMLVYLNQAWNETQRKCAEKGVLPRVNTLYHAVLHGAGMRVRPVMMTAAAIIIGL 990

Query: 784  LPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            LP+      G  V+   A PM  G+V A   ++ +   +         K
Sbjct: 991  LPILYGTGTGSEVMSRIAAPMVGGMVSAVVLTLLVLPAVYFLWKKSSLK 1039



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 49/124 (39%), Gaps = 1/124 (0%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +  L+ +   F    +L AI +L + I        L GI  N+ ++  +   IG  ++
Sbjct: 346 FLVVALVCVVFLFHVRSSLVAIISLPVGILTAFIVMHLQGINANIMSLGGIAIAIGAMID 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
             +V+ + + K+M+    +   R  ++  +  E      ++ +   +S +P+        
Sbjct: 406 GAIVMIENLHKHMEKVEMTKENRWQIVAAAAAEVGPALFFSLLIITVSFVPVFTLESQEG 465

Query: 795 GSFA 798
             F 
Sbjct: 466 RMFG 469


>gi|114326895|ref|YP_744052.1| acriflavin resistance plasma membrane protein [Granulibacter
           bethesdensis CGDNIH1]
 gi|114315069|gb|ABI61129.1| acriflavin resistance plasma membrane protein [Granulibacter
           bethesdensis CGDNIH1]
          Length = 1060

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/587 (11%), Positives = 156/587 (26%), Gaps = 40/587 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     V+L   I   G+L  L     ++  D FP+                       
Sbjct: 9   LKRPYTFVVLSIAIVFFGILSIL-----KTPTDVFPTIRIPVI---------AVVWTYGG 54

Query: 61  DEDDFVNGFLQ-MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
              D V G +   +   + S ++            +  + + F       +    V    
Sbjct: 55  LLPDEVAGRIIYNFEQGVTSTVEGIEHMQSDSYYGRAVVNIFFQPGTEIGSAEADVVAIS 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
           Q V  +L       +++      + ++  +   D +     +       +    +     
Sbjct: 115 QTVLIQLPEHTPAPMIMKLEASSVPVITLKLTSDNMTPS--DLFKLAQIRIRPMLVTVPG 172

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
            I       +   +    +  +L+    +   +       N  +      +         
Sbjct: 173 AIVPHPYGGMDSFVMISLNQEQLQAHHISAMDVQKVLDTQNVVRPAGDQKIGPTDWMVQT 232

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                   EI                     +I    +G    +      + +      +
Sbjct: 233 NATPRTVEEI--------------------ANIPVKRVGNAVVYIHDLGEVYRGGHPQTN 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++        +     + S    I     L   L           V     G   G+ 
Sbjct: 273 LVLVHGRQAVLLVVMKSGEASTLDVINGVRGLLPRLEKVIPASSHISVFSDAAGFVKGAI 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +         A L   V+ M +   +  ++   SI L ++ +L  L  LG T+ + ++ G
Sbjct: 333 TDVLREMTTAAALTGFVVIMFLGSWRPTVIIATSIPLAILCSLIGLGWLGQTINVMTLGG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + L +G+ VD   ++ E I       + +  ++    ++     F S     I  + LF 
Sbjct: 393 LALAVGILVDDATVMIENIDTHLEMGKDLETAIVDAANQIVIPTFVSTTCICIVWLPLFA 452

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
             G         A  + L++  S   + ++V  M  +++     +    +        P 
Sbjct: 453 LSGVAGWLFMPMAEAIILAMAASFILSRTLVPTMAKYLLAGHGHQGSHGHEEGHGHAHPP 512

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
                F R +         F       L       G      +   V
Sbjct: 513 KPPGFFTRFQKGFEKGFSSFREGYGRFLEVAIRRRGTVVLSMLAFSV 559



 Score = 58.9 bits (140), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 9/274 (3%)

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
              I                     +   R  +  V   +L  +  G     N       
Sbjct: 220 DQKIGPTDWMVQTNATPRTVEEIANIPVKRVGNAVVYIHDLGEVYRGGHPQTNLVLVHGR 279

Query: 618 LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI--- 674
              L        A T  +    + +   +      ++ I     +   ++  I  V+   
Sbjct: 280 QAVLLVVMKSGEASTLDVINGVRGLLPRLEKVIPASSHISVFSDAAGFVKGAITDVLREM 339

Query: 675 --ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
              +A+   + I     W   +   T++ L I  +L      G   N+  +  +   +G 
Sbjct: 340 TTAAALTGFVVIMFLGSWRPTVIIATSIPLAILCSLIGLGWLGQTINVMTLGGLALAVGI 399

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D  V+ + +                I  + N+ +  +  ++    I  LP+    G 
Sbjct: 400 LVDDATVMIENI---DTHLEMGKDLETAIVDAANQIVIPTFVSTTCICIVWLPLFALSGV 456

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               F  PMA  I++A ++S  ++  ++  +  +
Sbjct: 457 AGWLFM-PMAEAIILAMAASFILSRTLVPTMAKY 489



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 61/156 (39%), Gaps = 5/156 (3%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + +S   + + I + F  W      IT L   +        L     ++ A+   +  +G
Sbjct: 902  LFVSVAVIYLLIVVNFQSWMDPFIIITALPGALAGIAWSLFLTKTNISVPALTGAIMCMG 961

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + ++V    R+ M+++  +++      ++    +   + T+ A  + ++PMA    
Sbjct: 962  TATANSILVVSYARERMEIHGKALT---AALEAGYGRIRPVIMTASAMIVGMIPMATSNS 1018

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                     +  G+++A  S++     I   +Y  R
Sbjct: 1019 EN-APLGKAVIGGLIMATISTLVFVPCIYAIVYSRR 1053


>gi|154253806|ref|YP_001414630.1| CzcA family heavy metal efflux protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154157756|gb|ABS64973.1| heavy metal efflux pump, CzcA family [Parvibaculum lavamentivorans
           DS-1]
          Length = 1060

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/603 (11%), Positives = 162/603 (26%), Gaps = 64/603 (10%)

Query: 5   PWLVILYSMICC-IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE- 62
            WLV+L        G          +  +D  P                 +++ ++++  
Sbjct: 13  RWLVLLTVAFVAGFGAY-----NFTRLPIDAVPDI---------------TNVQVQINTS 52

Query: 63  -----DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   V   +    +     L          R   +++T+ F D          +  
Sbjct: 53  APGYSPVEVEQRITFPLETAMGGLPGLDYTRSLSRYGLSQVTVVFVDGTDIYRARQLIGE 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRI 171
            +Q V+ +L  D +  +   +T      +                    +          
Sbjct: 113 RIQAVSGELPPDVETAMGPVSTGLGEIYMYRMEAAPDARNAEGVPYTLSDLRAIHDWMVR 172

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            Q+      ++         Q+    DP RL     + A ++      N ++        
Sbjct: 173 PQLRTVPGVVEVNAIGGYERQIHVVPDPYRLTSFNLSFADVAKALEDNNVNQGAGYIERN 232

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +        + D  E   + L               V    +        +     +G
Sbjct: 233 GEQYLIRLPGQLGDAAEFGEVLLGTHNGRPIYIHDVAEVTFGKELRTGAATHDGEETVLG 292

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
             + ++ +                    +              +                
Sbjct: 293 TAVMLMGE--------------------NSREVASAVRGKLKQIERNLPDGVTIETLYDR 332

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 + +  +      A LV++VLFM++   +  L+    I L++++ +  +     +
Sbjct: 333 TDLVQKTIATVRNNLVEGAVLVIVVLFMLLRSIRAALITAAVIPLSMLIAVTGMVEYRIS 392

Query: 412 LTLPSIAGI--VLGIGLAVDSNILVNERIREENRK-----NQSVFCS--LDMGFSRAYST 462
             L S+  I   L +  AV        R+ EE +            +  +D         
Sbjct: 393 ANLMSLGAIDFGLIVDGAVIITENCLRRLSEERKHLGRTLGLDERFAVVVDATREVITPA 452

Query: 463 IFDSNITALIATVVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           +F S I  ++   +L   G         A+T+ L++L +M  A++ V A +   +R    
Sbjct: 453 MFGSFIITVVYLPILTLTGVEGKMFTPMAVTVVLALLGAMALAVTFVPAAIAIFVRGDVE 512

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +   +            +     R +   +  + L  + ++              +G + 
Sbjct: 513 EKESLIMRWAQKGYQPALRFALGRQKTIAIAAAALVLVAALGATRFGTEFIPRLDEGDVA 572

Query: 581 LGV 583
           + V
Sbjct: 573 VQV 575



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 86/254 (33%), Gaps = 11/254 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                 +   V    +  + +     Q         + +     +    + V E       
Sbjct: 810  PFGEGMPRVVPLREVAEIALAPGPNQISRENGKRRITVTANIRERDLGSFVDEARAAVAA 869

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW---YFALGAITTL 700
            ++            G +  + +     + +++ A  +LI+  +         AL   + +
Sbjct: 870  QVQLPPGY--WFEWGGQFEQLVSAAKRLSIVVPAALVLIFALLFASLGTARDALLVFSGV 927

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             L +T  L   AL G+  +++A    + L G +V + +V+   ++    L    +   + 
Sbjct: 928  PLALTGGLAALALRGMPLSISAGVGFIALSGVAVLNGLVIISFIK---NLRARGLPLDEA 984

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I +     L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +  
Sbjct: 985  IRQGAMTRLRPVLMTALVASLGFVPMALATSAGAEVQRPLATVVIGGILSSTILTLLVLP 1044

Query: 818  PILLFIYDWRAKNA 831
             I    +    +  
Sbjct: 1045 AIYRLAHARDEEER 1058



 Score = 46.2 bits (107), Expect = 0.026,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 56/140 (40%), Gaps = 11/140 (7%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
               + +++++ +R     AL     + L +   +     + I  NL ++ A+    G  
Sbjct: 350 GAVLVIVVLFMLLR-SIRAALITAAVIPLSMLIAVTGMVEYRISANLMSLGAI--DFGLI 406

Query: 734 VNDKVVVYD----RMRKNMKLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVLPM 786
           V+  V++ +    R+ +  K    ++   +   ++  +  E +  +++ S    +  LP+
Sbjct: 407 VDGAVIITENCLRRLSEERKHLGRTLGLDERFAVVVDATREVITPAMFGSFIITVVYLPI 466

Query: 787 AVWGGSVIGSFAIPMAFGIV 806
               G     F  PMA  +V
Sbjct: 467 LTLTGVEGKMF-TPMAVTVV 485


>gi|330824787|ref|YP_004388090.1| CzcA family heavy metal efflux pump [Alicycliphilus denitrificans
           K601]
 gi|329310159|gb|AEB84574.1| heavy metal efflux pump, CzcA family [Alicycliphilus denitrificans
           K601]
          Length = 1039

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/550 (10%), Positives = 143/550 (26%), Gaps = 44/550 (8%)

Query: 11  YSMICCIGLLIALPNF-LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           + ++    +L A   + +  + +D  P       I                     V   
Sbjct: 14  FLVLLATAMLAAWGMWGVRSTPVDALPDLSDVQVI---------IRTSYPGQAPQIVENQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  V  +L   
Sbjct: 65  VTYPLATTMLSVPGAKTVRGFSFFGDSFVYVLFEDGTDLYWARSRVLEYLNQVQGRLPAT 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            K  L    T                 +   +           ++    +  +      +
Sbjct: 125 AKPALGPDATGVGWIFQY-ALLDRTGKNDLAQLRALQDWFLKFELKSLPNVAEVASVGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     DP RL     +  ++    V                     NQ      +E+
Sbjct: 184 VRQYQVVLDPIRLASHGLSQGQVRDALVN-------------------ANQETGGSVLEL 224

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           SG       + +                G              P        +     + 
Sbjct: 225 SGAEYMVRASGYLKSLDDFRAVPLVARGGVPIRLGDVATLQVGPEMRRGIAELDGEGEVA 284

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +   ++  +   TI       A L+A        +           +           
Sbjct: 285 GGVVILRSGKNAQETIAAVKAKLAQLQASLPQGVEIVTTYDRSALIERAIRNLTTKLGEE 344

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V +V  + + + +  LVA  S+ L V+    ++   G    + S+ GI + +G  VD
Sbjct: 345 FLVVALVCALFLWHLRSALVAIISLPLGVMTAFLVMRYQGINANIMSLGGIAIAVGAMVD 404

Query: 430 SNILVNERIR-----------EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + +++ E              ++  + +  +  +          +F S +   ++ + +F
Sbjct: 405 AAVVMIENAHKKLEAWQHAHPDKRLQGKERWEVITHAAQEVGPALFFSLLIITLSFIPVF 464

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   +++++  +M + IR +               + 
Sbjct: 465 TLEAQEGRLFGPLAFTKTYAMAAAAGLSVTLIPVLMGYWIRGRIPDEQKNPITRMLIAVY 524

Query: 536 DCIAIQFMRA 545
             +    +R 
Sbjct: 525 RPVLEWVLRR 534



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 85/284 (29%), Gaps = 18/284 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L  V     +     +  +N     
Sbjct: 762  LARFPINLRYPREWRDSPQRLAQLPISTPMGQQITLGTVAHIAITDGPPMLKSENARPSG 821

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V ++ +   SVA      + ++   E               + +  L     V V  
Sbjct: 822  WVYVDVRGRDLASVANELRDAIGRQVKLEPGVSIAYSGQFEYMERANARLK----VVVPA 877

Query: 676  SAIAMLIYIWIRFKWYFALGAITT-LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + + +++ F      G I   L   +T  + F  L     ++      + L G + 
Sbjct: 878  TLLIIFVLLYLTFGRVDEAGLIMATLPFALTGGIWFLYLMNYNLSIATGVGFIALAGVAA 937

Query: 735  NDKVVVY--------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               VV+         +R     +   T     D I +     +     T       ++P+
Sbjct: 938  EFGVVMLIYLKHALDERCPDGRR--PTQEELLDAIREGAVLRVRPKAMTVAVILAGLVPI 995

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                  G  V+   A PM  G+V A   S+F+     + +   R
Sbjct: 996  VWGSGTGSEVMSRIAAPMLGGMVTAPLLSLFVIPAAFVLMRRPR 1039


>gi|284038057|ref|YP_003387987.1| heavy metal efflux pump, CzcA family [Spirosoma linguale DSM 74]
 gi|283817350|gb|ADB39188.1| heavy metal efflux pump, CzcA family [Spirosoma linguale DSM 74]
          Length = 1462

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 81/682 (11%), Positives = 192/682 (28%), Gaps = 55/682 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   + +    +   G   A      Q  +D  P                   + +   
Sbjct: 11  RNKLIIGLFTFALVLWGGWSA-----TQLPIDAVPDITNN-------------QVQVITS 52

Query: 62  EDDFVNGFLQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   ++       +   S +          R   + +T+ F+D+        ++  
Sbjct: 53  SPSLAAEDIERLVTFPVEVSLSNIPDLVEIRSFSRFGLSIVTVVFSDATDVYWARQQIAE 112

Query: 118 FLQGVNSKLNVDPKKNL---LVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
            LQ V  ++       +   + T   +     +      +      E            +
Sbjct: 113 RLQNVIGQIPPGVGTPVMAPVTTGLGEIFQYTVVPKKGYESKYSLTELRTIQDWTIRRGL 172

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
             +       G   ++ Q     DP RLR +  T  ++       N +  G     +   
Sbjct: 173 LGTPGVADVSGFGGLMKQYEIAVDPDRLRSMGITITEIFTALQQNNQNTGGAYIDKKPNA 232

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
               +  L+    +I                    + I  ++ G                
Sbjct: 233 FFIRSDGLINSTDDI------------------ADIVIHLNDQGLPVRVRDVAQVTMGSA 274

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                           AI       + +  I+      A ++         +        
Sbjct: 275 VRYGAVTRNGEGETVGAIVMMIKGENSSAVIKRVKTKIAEIQKTLPEGVQIVPFLDRTKM 334

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              +    +      A +V+ VL +++   + G V    I L ++  +A+++L G +  L
Sbjct: 335 VNSAIGTVERNLLEGAAIVIFVLVLLLGNFRAGFVVASVIPLALLFAIAMMNLFGVSGNL 394

Query: 415 PSIAGI--VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN----- 467
            S+  I   L +  AV         I   NR        +D     + + I  S      
Sbjct: 395 MSLGAIDFGLIVDGAVIIVEATLHHIMLRNRDKTLTQSEMDEEVFLSAARIRSSAAFGEI 454

Query: 468 --ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSI 523
             +   +  + L    G   R  A+T+  +IL +   +I+ V  +   ++  K    +++
Sbjct: 455 IILIVYLPILALSGIEGKMFRPMALTVAFAILGAFILSITYVPMISALMLSKKIVHKETL 514

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
               + R + + +   +  ++ RF  +  ++   + ++ L    G  +           V
Sbjct: 515 SDRLMKRIYRVYEPALLTALKHRFLILAGAVSLLVVTVFLFGRMGGEFIPQLD-EGDFAV 573

Query: 584 LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                   S+  +   +L+   I  + F   +  + ++      +             + 
Sbjct: 574 DTRTLTGSSLSETVDATLKAERILLKQFPEVEQVVAKIGSGEIPTDPMAIEAADQMVILK 633

Query: 644 EIVPLSTIQNTEIVGPKISREL 665
                ++ +  + +  K+S  L
Sbjct: 634 PKDEWTSARTRDELATKMSEAL 655



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 95/267 (35%), Gaps = 20/267 (7%)

Query: 570  NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSV 629
               I+    + + V     + LS V S         I   N          ++ +  +S+
Sbjct: 780  RQSIEDIQNMYISVPTGGQIPLSQVASVTMEQAPNQIQRDNTHRRITLGFNVRGRDVESI 839

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688
                  ++ ++         T            + L     + V ++   +   ++  F 
Sbjct: 840  VAELQQKVGQQIKFPPGYYITYGGQFQNLVDAKKRLT----IAVPLALGLIFALLFFTFN 895

Query: 689  KWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVV---YDR 743
                +L  +  + + +    G FAL    + F+++A    + L G SV + +V+   ++R
Sbjct: 896  SVRQSL--LIFMAIPMAAIGGVFALLLRDMPFSISAGVGFIALFGVSVLNGIVLIAEFNR 953

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
            +R    L        ++I +     L   + T++ A    +PMA+    G  V    A  
Sbjct: 954  LRHEDGL----TDMVEIIRQGTEVRLRPVIMTALVASFGFIPMAISNSAGAEVQKPLATV 1009

Query: 801  MAFGIVVAASSSIFIAAPILLFIYDWR 827
            +  G++  A+    I  PIL  + + +
Sbjct: 1010 VIGGLLT-ATLLTLIVLPILYSLMEKK 1035



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 14/169 (8%)

Query: 673 VIISAIAMLIYIWIR--FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
           +  +AI + + + +   F+  F + ++  L L     +    LFG+  NL ++ A+    
Sbjct: 347 LEGAAIVIFVLVLLLGNFRAGFVVASVIPLAL--LFAIAMMNLFGVSGNLMSLGAI--DF 402

Query: 731 GYSVNDKVVVYDR-----MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           G  V+  V++ +      M +N     T     + +  S       + +  +   I  LP
Sbjct: 403 GLIVDGAVIIVEATLHHIMLRNRDKTLTQSEMDEEVFLSAARIRSSAAFGEIIILIVYLP 462

Query: 786 MAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           +       G +    A+ +AF I+ A   SI     I   +   +  + 
Sbjct: 463 ILALSGIEGKMFRPMALTVAFAILGAFILSITYVPMISALMLSKKIVHK 511


>gi|154685056|ref|YP_001420217.1| YdfJ [Bacillus amyloliquefaciens FZB42]
 gi|154350907|gb|ABS72986.1| YdfJ [Bacillus amyloliquefaciens FZB42]
          Length = 717

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/508 (12%), Positives = 162/508 (31%), Gaps = 56/508 (11%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI---AGIVLGI 424
           +   L  +VL +         +   +  + + +++AL  +     T+ S+      ++G+
Sbjct: 180 VGVVLAFVVLAITFGSLVIAGLPIVTALIGLGVSIALTLIGTQFFTIASVSLSLSGMIGL 239

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            + +D  + +  + R+   +      S+      A S +  + +T ++A   L   G   
Sbjct: 240 AVGIDYALFIFTKHRQFLGEGVQKNESIAKAAGTAGSAVVFAGLTVIVALCGLTVVGIPF 299

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           +    +T  LS+L+++  ++++V A++  I   + +         +             +
Sbjct: 300 MSAMGLTAALSVLMAVLASVTLVPAVLS-IAGKRMIPKSYKKKEKKSAGTNGWGRFVTKK 358

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR----------------- 587
                +   IL ++ S+  +           K        A                   
Sbjct: 359 PILLSIFSIILLAVISLPAMHLELGLPDAGMKAKDSPDRRAYDLLSKGFGEGFNGKLTIV 418

Query: 588 -------------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
                                 +L ++     +  N  G+   +  +     +  A   +
Sbjct: 419 ADAKGVKGNKSEAFQGAVKEMKDLHNVASVTPAMPNEKGDYAIITAVPETGPNDKATKEL 478

Query: 635 LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG--IVGVIISAIAMLIYIWIRFKWYF 692
           ++ ++K+  +      +  +  V   IS  L         +I+    +L+ +  R     
Sbjct: 479 VQDIRKRSDKNGIRLLVTGSTAVNIDISDRLNDAIPEFAILIVGFAFVLLTVVFR-SLLV 537

Query: 693 ALGAITTLILDITKTLGFFALF---------------GIEFNLTAVAAVLTLIGYSVNDK 737
            L A+   +L +T TLG                    G       + A+  L G +++ +
Sbjct: 538 PLAAVVGFLLTMTATLGLSVFVLQDGNFTGLLSIPEKGPILAFLPILAIGILFGLAMDYQ 597

Query: 738 VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           V +  RMR+    Y  + +    I   +  +        +            G + I S 
Sbjct: 598 VFLVSRMREE---YVKTKNPVQAIHAGLKHSGPVVTAAGLIMIFVFAGFIFAGEATIKSM 654

Query: 798 AIPMAFGIVVAAS-SSIFIAAPILLFIY 824
            + M FG++  A    + I   ++  + 
Sbjct: 655 GLAMTFGVLFDAFIVRMTIIPSVMKLMG 682



 Score = 47.4 bits (110), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 50/157 (31%), Gaps = 37/157 (23%)

Query: 704 ITKTLGFFALFGIEFNLTAVAAV--------------LTLIG------------------ 731
           I   +  F +  I F    +A +              LTLIG                  
Sbjct: 179 IVGVVLAFVVLAITFGSLVIAGLPIVTALIGLGVSIALTLIGTQFFTIASVSLSLSGMIG 238

Query: 732 --YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
               ++  + ++ + R+ +          + I K+        V+  +   +++  + V 
Sbjct: 239 LAVGIDYALFIFTKHRQFLGEGVQK---NESIAKAAGTAGSAVVFAGLTVIVALCGLTVV 295

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           G   + +  +  A  +++A  +S+ +   +L      
Sbjct: 296 GIPFMSAMGLTAALSVLMAVLASVTLVPAVLSIAGKR 332


>gi|39998489|ref|NP_954440.1| CzcA family heavy metal efflux protein [Geobacter sulfurreducens
           PCA]
 gi|39985436|gb|AAR36790.1| heavy metal efflux pump, CzcA family [Geobacter sulfurreducens PCA]
          Length = 1023

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/548 (13%), Positives = 165/548 (30%), Gaps = 51/548 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   +V+L ++I  +G L+AL     +  +D  P                   ++ E   
Sbjct: 12  NRLIVVVLSALILVVGTLVAL-----RMPVDVLPDLTAPT-----------VTIMTEAQG 55

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   + M  +   +                + + + F            V   +Q
Sbjct: 56  MAPEELETLVTMPVESAVNGATGVRRVRSYTVAGLSTVWVEFTWGTDIYRARQVVNEKMQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           G+ + L       L   ++     + +   +         E +   +R+R   +      
Sbjct: 116 GLAASLPAGVMPTLTPISSIMGEVMYIGLTSDRHSPMELKETADFAVRRR---LLAVPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q +       Q   E DP  L     +  ++       N +    +             
Sbjct: 173 SQVVVLGGEKRQYQVELDPLGLASFGISVGEVLEAVRGNNENFAAGIMKS---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G                    +     G                  V D 
Sbjct: 223 ---------GGQDYLIRGVGRYQTADDLGRVVVSTRNGIPVLVRDIARVAVGSAVRVGDA 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            V T P I  ++       +   T    G LA + +     ++L     R       +  
Sbjct: 274 SVDTKPGILISVAKHPETNTLTLTGLLDGKLAEIRKGLPAGMELRGDIFRQSDFIQRAMD 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +      A LV+ ++F+ +   +   ++  ++ L++I  +  L L   ++   ++ G+
Sbjct: 334 NIRKVLVEGAVLVVAIIFLFLGSMRTTFISIVAMPLSLIFAIFTLRLFDISINTMTLGGM 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG+ VD  I+  E +    R+N +   +        +        S+I ++ +  ++
Sbjct: 394 AIAIGVIVDDAIIDVENVYRRLRENGAKPEARREPAGKVIFDASKEIRSSIVNATLIIVL 453

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             + LFF     G  ++   I+  +SI  S+  A+++  A+  +++   +          
Sbjct: 454 VFLPLFFLSGVEGRLLKPLGISYMVSIGASLLVALTVTPALCSYLLPRARFLDRHDEGRV 513

Query: 530 RFFLIPDC 537
             +L    
Sbjct: 514 FTWLQNAY 521



 Score = 75.9 bits (184), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 8/164 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V  + + + I             +I  + L +   +    LF I  N   +  +   IG 
Sbjct: 340 VEGAVLVVAIIFLFLGSMRTTFISIVAMPLSLIFAIFTLRLFDISINTMTLGGMAIAIGV 399

Query: 733 SVNDKVV----VYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            V+D ++    VY R+R+N             +I  +  E     V  ++   +  LP+ 
Sbjct: 400 IVDDAIIDVENVYRRLRENGAKPEARREPAGKVIFDASKEIRSSIVNATLIIVLVFLPLF 459

Query: 788 VWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              G    ++    I     I  +   ++ +   +  ++     
Sbjct: 460 FLSGVEGRLLKPLGISYMVSIGASLLVALTVTPALCSYLLPRAR 503



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
            ++S + + + +++ F+ +  +G I  + L +    G  A+F  G   N++ +   +TL G
Sbjct: 869  LVSFLFIGLVLYLEFRSFRDVG-IVMVNLPLAFIGGILAVFITGGVINVSTLVGFITLFG 927

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +V + +++    R    L    +   + +D+   E L   V T++AA ++++P AV   
Sbjct: 928  IAVRNGILLVSHYR---HLMVEGLQLAEAVDRGSRERLRPVVMTALAAGLALIPFAVAAH 984

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G  ++   AI +  G++ +   ++ +   +      
Sbjct: 985  KPGNEILSPLAIVILGGLLSSTVLNMVVLPSLYRRFGR 1022


>gi|86160520|ref|YP_467305.1| heavy metal efflux pump CzcA [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85777031|gb|ABC83868.1| Heavy metal efflux pump CzcA [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 1094

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/571 (12%), Positives = 143/571 (25%), Gaps = 43/571 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           NP++V+  +++  +G    + N      LD  P       I      R            
Sbjct: 12  NPFIVLGATLVTLVGAWWTMRNI----PLDALPDMSDTQVIVYSKWDR----------SP 57

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           D +   +            +            + + + F D         +V  +L  + 
Sbjct: 58  DIIEDQVTYPITSALLGAPRVKAVRGFSDFGFSYVYVIFEDGTDMYWARTRVLEYLSKIT 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
            +L       L    T                   + E            +       + 
Sbjct: 118 PQLPQGVTTELGPDATSVGWVFQY-ALVDRTGKHTSDELRSTQDWFLRYAVQSVPGVSEV 176

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                 + Q     +P+ L         +                         GN  + 
Sbjct: 177 ATVGGQVRQYQITVNPNALASYGLPIDAVVQAVRS-------------------GNNDVG 217

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
              VE+SG         +          +   + G     +        P        + 
Sbjct: 218 GRLVELSGREYMVRGRGYVKSIQDLENLVLRAQGGTPVLVKDVATVSLGPEMRRGIADLD 277

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   I   +A  +    I+        ++         +           +    K
Sbjct: 278 GEGDVVGGIVVMRAGENALNVIDRVKAKLEEVKPSLPKGVEVVTTYDRSELIGKAIENVK 337

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
           G       +V +V+ + + +    +V   +I ++V L    +  +G    L S+AGI + 
Sbjct: 338 GKLLEEILIVSLVILVFLWHVPSAIVPIVTIPVSVALAFIPMYFMGLNANLMSLAGIAIS 397

Query: 424 IGLAVDSNILVNERIREENRK------NQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           IG+ VD  I+  E    +                           +F S +   +A + +
Sbjct: 398 IGVLVDGAIVEVENAYNKIHHWIADGKKGDFHQVRLEALLEVGPGVFFSLLVVAVAFMPV 457

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G   R  A +  L++ I+   AI++  AM +   R +  +            +
Sbjct: 458 FTLVDQEGRLFRPLAYSKNLAMAIAALLAITLDPAMRMLFARVEPFRFRPRPVAWVANQV 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLF 565
                    R         I    C   +  
Sbjct: 518 LVGKYYSEERHPISRFLHRIYEPPCRFVVKH 548



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/245 (11%), Positives = 62/245 (25%), Gaps = 12/245 (4%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
               +  + +        D        +      S           K     +        
Sbjct: 836  MEEIADVVLAQGPSMIRDENGLLAGYVYVDFDTSKVDVGRYVDQAKAKVAELVKPPPGYA 895

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGA---ITTLILDITKTLGFF 711
                 +    +  K  + +II    +LI+  +      A  A   +  +       +   
Sbjct: 896  ISWSGQYENMIRVKERLKLIIPVTLVLIFALLYMNTKSAFKASLVMLAVPFSAIGAVWLL 955

Query: 712  ALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLY---TTSISFRDLIDKSI 765
             L     ++     ++ L+G      V +    D      +            + I    
Sbjct: 956  WLLDYNVSIAVWVGLIALMGLDAETGVFMLLFLDLSYDEHRKKGLVKDEDGLVEAIIHGA 1015

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             + +     T  AA + +LP+      G  ++   A PM  G+V +    + +   +   
Sbjct: 1016 VKRVRPKAMTVFAAMMGLLPIMWSTGTGADLMKRIAAPMVGGLVTSFLLELLVYPAVYFL 1075

Query: 823  IYDWR 827
                 
Sbjct: 1076 WKKRE 1080



 Score = 45.8 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 66/162 (40%), Gaps = 8/162 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              LE VK  + + V + T  +   +  K    +  K +  ++I ++ +L+++W      
Sbjct: 303 KAKLEEVKPSLPKGVEVVTTYDRSELIGKAIENVKGKLLEEILIVSLVILVFLW---HVP 359

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKN 747
            A+  I T+ + +          G+  NL ++A +   IG  V+  +V     Y+++  +
Sbjct: 360 SAIVPIVTIPVSVALAFIPMYFMGLNANLMSLAGIAISIGVLVDGAIVEVENAYNKIH-H 418

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
                    F  +  +++ E      ++ +   ++ +P+   
Sbjct: 419 WIADGKKGDFHQVRLEALLEVGPGVFFSLLVVAVAFMPVFTL 460


>gi|326317516|ref|YP_004235188.1| heavy metal efflux pump, CzcA family [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323374352|gb|ADX46621.1| heavy metal efflux pump, CzcA family [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 1051

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/689 (9%), Positives = 160/689 (23%), Gaps = 68/689 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L         +        +  +D  P                 +++ ++++   
Sbjct: 13  RWLVMLAVAGMAALGIY----NYQRLPIDAVPDI---------------TNVQVQINSAA 53

Query: 65  F------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                      +    + + + L          R   +++T+ F D          V   
Sbjct: 54  PGYSPLETEQRVTYPIETVMAGLPGLKQTRSLSRYGLSQVTVIFEDGTDIYFARQLVNER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS------HAIEQSMEIIRQRID 172
           +Q    +L       +   +T      + +    +             +           
Sbjct: 114 IQAAREQLPEGVSPVIGPISTGLGEIYLWTVEAEEDARRPDGKEYTPTDLREVQDWIIKP 173

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           Q+   +   +         +      P +L     T A +       N +        R 
Sbjct: 174 QLRNVKGVTEINSIGGFAKEYQVAPSPEKLHAHGLTLADVVTALERNNENVGAGYIERRG 233

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
            +        V    ++  I ++                                  +  
Sbjct: 234 EQYLIRAPGQVRTIEDVGNIVVSNVA--------------------GVPIRIGDVGEVIV 273

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
              +           +           +     +        +          +      
Sbjct: 274 GRELRTGAATDNGKEVVLGTVFMLIGENSRTVSQAVDRKMEEINRTLPAGVKAVTVYDRT 333

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                + +  K      A LV+ VLF  +   +  L+    I L ++ T   +     + 
Sbjct: 334 VLVDKAIATVKKNLLEGAFLVIAVLFAFLGNIRAALITAMVIPLAMLFTFTGMVSQKVSA 393

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYST 462
            L S+  +  GI   VD  +++ E         Q            F  +      A   
Sbjct: 394 NLMSLGALDFGII--VDGAVVIVENCIRRLAHAQHAAGRALTLKERFSEVFEAAREARRP 451

Query: 463 IFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +    +  ++  + +F      G      A T+ +++L +M  +++ V   +   I    
Sbjct: 452 LVFGQLIIMVVYLPIFALAGVEGKMFHPMAFTVVIALLGAMILSVTFVPVAVALFIGRHV 511

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            +  +             +                   +C +              +G +
Sbjct: 512 AEKENRMMAWLRARYEPLLEWALGAKLVVLAAAMAAIVLCGLMATRLGTEFAPNLSEGDL 571

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +   A R    S+  S     +I       F   +    R       S      +    
Sbjct: 572 AIQ--AIRIPGTSLSESVAMQQKIEIAVKAKFPEVRRVFARTGTAEIASDPMPPNISDGY 629

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRK 668
             +  +      + T        +E + K
Sbjct: 630 IMLNPVSEWPEPRRTPAELRDAIQEEVEK 658



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 70/219 (31%), Gaps = 14/219 (6%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             + SL I     Q         + +          + V E         +P         
Sbjct: 809  EVASLDIAPGPNQVSRENGKRRIVVSANVRSRDLGSFVAEAQAAIRQVALPSGYWVEWGG 868

Query: 657  VGPKISRE-LIRKGIVGVIISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGFFA 712
                +       K +V V +  + +L++      R       G    L   +        
Sbjct: 869  QFENLQSAANRLKIVVPVSLGLVFVLLFAMFGNARDGLLVFTGIPFALTGGVLA----LW 924

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            L  I  +++A    + L G +V + +V+   +R   +L    +   + +     + L   
Sbjct: 925  LRDIPLSISAGIGFIALSGVAVLNGLVMLSFIR---QLRDEGMPLPEAVRTGAVQRLRPV 981

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
            + T+M A +  +PMA+    G  V    A  +  GI+ +
Sbjct: 982  LMTAMVASLGFIPMALATGTGSEVQRPLATVVIGGILSS 1020



 Score = 40.1 bits (91), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 62/173 (35%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + +          AL  IT +++ +     F  +   + +   ++      G 
Sbjct: 348 LEGAFLVIAVLFAFLGNIRAAL--ITAMVIPLAMLFTFTGMVSQKVSANLMSLGALDFGI 405

Query: 733 SVNDKVVVYD----RMRKNMKLYTTSISFRDL---IDKSINETLGRSVYTSMAAFISVLP 785
            V+  VV+ +    R+         +++ ++    + ++  E     V+  +   +  LP
Sbjct: 406 IVDGAVVIVENCIRRLAHAQHAAGRALTLKERFSEVFEAAREARRPLVFGQLIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    A  +   ++ A   S+ F+   + LFI      K  R+
Sbjct: 466 IFALAGVEGKMFHPMAFTVVIALLGAMILSVTFVPVAVALFIGRHVAEKENRM 518


>gi|254480579|ref|ZP_05093826.1| heavy metal efflux pump, CzcA family [marine gamma proteobacterium
           HTCC2148]
 gi|214039162|gb|EEB79822.1| heavy metal efflux pump, CzcA family [marine gamma proteobacterium
           HTCC2148]
          Length = 1038

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/607 (10%), Positives = 165/607 (27%), Gaps = 40/607 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N   V+L + +  I  L +L N    + +D  P       I                   
Sbjct: 12  NRLFVLLAAFVLVIAGLFSLRN----TPVDAIPDLSDVQVI---------IKTNFPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F +         +V  +L  V 
Sbjct: 59  QVVEDQVTYPLTTAMLSVPGAVTVRGYSFFGDSYVYVIFDEDTDLYWARSRVLEYLSQVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    +  L    T      +              E           ++       + 
Sbjct: 119 PSLPAAARPQLGPDATGVGWVYLY-ALVDRTGQHDISELRSLQDWFLKYELQTVPGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q     +P +LR      + +       N      +  +            +
Sbjct: 178 SVVGGMVKQYQVRVNPEKLRAFDIPLSHIQTAIKRGNQEIGASVIEMAEAEYMVRATGYI 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +++ ++                    + +  ++ G     +   +    P        + 
Sbjct: 238 QNQQDLGN------------------IPLGVNQNGTPLRLKDVAEIGIGPQMRRGIAELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   I   +   +   TI         L+         +      G    +     
Sbjct: 280 GEGEAVGGIVVMRYGENAQNTINNVKAKMEELKQSLPDGVEIVTVYDRSGLIERAVKNLW 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   +V +V  + + + +  LVA  S+ + ++    ++ L G    + S+ G+ + 
Sbjct: 340 QKLLEEFVVVALVCMIFLFHVRSSLVAIISLPIGILTAFIVMHLQGVNANIMSLGGVAIA 399

Query: 424 IGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF- 478
           IG  +D  I++ E + ++  K    +++ +  +    S     +F S +   ++ V +F 
Sbjct: 400 IGAMIDGAIVMIENMHKQMEKTPLTDENRWHVVAASASEVGPALFFSLLIITVSFVPVFA 459

Query: 479 --FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  +   +I+++  +M + IR   +                
Sbjct: 460 LEAQEGRMFTPLAYTKTYAMAAAAALSITLIPVLMGYFIRGNVLPEDKNPLNRALIAGYV 519

Query: 537 CIAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
            +  + +R  R      + + +  +  L+           +G +         + +   R
Sbjct: 520 PVLKKTLRFPRTVLFLAATVLATTAWPLVNIGSEFIPPLDEGDLMYMPTTYPGISIGEAR 579

Query: 596 SNLESLQ 602
             L+   
Sbjct: 580 RILQHTD 586



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/202 (13%), Positives = 74/202 (36%), Gaps = 2/202 (0%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           +       I+  N +GE    + +     ++      ++   +++ + +P      T   
Sbjct: 267 IGPQMRRGIAELNGEGEAVGGIVVMRYGENAQNTINNVKAKMEELKQSLPDGVEIVTVYD 326

Query: 658 GPKISRELIRKGIVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
              +    ++     ++   + + +  +   F    +L AI +L + I        L G+
Sbjct: 327 RSGLIERAVKNLWQKLLEEFVVVALVCMIFLFHVRSSLVAIISLPIGILTAFIVMHLQGV 386

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYT 775
             N+ ++  V   IG  ++  +V+ + M K M+    +   R  ++  S +E      ++
Sbjct: 387 NANIMSLGGVAIAIGAMIDGAIVMIENMHKQMEKTPLTDENRWHVVAASASEVGPALFFS 446

Query: 776 SMAAFISVLPMAVWGGSVIGSF 797
            +   +S +P+          F
Sbjct: 447 LLIITVSFVPVFALEAQEGRMF 468


>gi|170746675|ref|YP_001752935.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
 gi|170653197|gb|ACB22252.1| acriflavin resistance protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 1087

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/514 (11%), Positives = 146/514 (28%), Gaps = 36/514 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++      +L  ++   GL                P  +     + GLD           
Sbjct: 8   LKFRKSFYVLAVLMFLTGLGSIAVAPKDVLPAVDIPVVVVVWTYN-GLD----------- 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D V          L S +        +  Q      + F  +   +    +V   + 
Sbjct: 56  -ATDMVQRITNYSEFSLSSNVNNIRRIESTSIQGTVTERIYFDSAVSIDLAMTQVDSAMN 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + S++    +  +++  +   + ++    +  ++     E       +   ++     +
Sbjct: 115 AIRSRMPPGVQPPVIMRFSASSVPVIQMALSSSKLP--LTEVFDYAQYRTRRRLAEVPGS 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+  + DP++LR +  T   +    +  N      +  +          
Sbjct: 173 TLPSPYGGAPRQVMVDLDPAKLRAIGMTPLDVLNAVLTQNLVVPSGLAKI---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N  P+    +  I       +        ++       ++ 
Sbjct: 223 ----------GTQQYTVRLNSSPQLIDQLDRIPIKVENNQPVLLRDVAHVRDGAPPQINV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              S    +         + A +                  + S
Sbjct: 273 VRADGHHSVLLQVLKNGAASTLDVVNAVKAALPDIHAAAPKGMTITPLFDQSVFVSDAIS 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I AGL  + + + +   +  +V   SI L ++ +L++L  LG T+ + ++ G+
Sbjct: 333 DVVREAVIAAGLTGLAILLFLGSWRSTIVVLVSIPLCILTSLSILVALGQTINVMTLGGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   +  E       +  S   S+  G +        S +    A   +FF 
Sbjct: 393 ALAVGILVDDATVAIENTFRMFEEGFSFRRSVVEGVAGIAKPALISTLAICSAFSAVFFL 452

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                R   +    +++ +M T+  + R ++  +
Sbjct: 453 TDAP-RYLFVPQAEAVVFAMLTSYLLSRTLVAIL 485



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 27/198 (13%), Positives = 79/198 (39%), Gaps = 13/198 (6%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    L  +     + + ++ + +  +       +++R+ ++   ++ +A+L+++    
Sbjct: 298 NAVKAALPDIHAAAPKGMTITPLFDQSVFVSDAISDVVREAVIAAGLTGLAILLFLG--- 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMR 745
            W   +  + ++ L I  +L      G   N+  +  +   +G  V+D  V  +   RM 
Sbjct: 355 SWRSTIVVLVSIPLCILTSLSILVALGQTINVMTLGGLALAVGILVDDATVAIENTFRMF 414

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
           +         SFR  + + +      ++ +++A   +   +     +    F +P A  +
Sbjct: 415 EE------GFSFRRSVVEGVAGIAKPALISTLAICSAFSAVFFLTDAPRYLF-VPQAEAV 467

Query: 806 VVAASSSIFIAAPILLFI 823
           V A  +S  ++  ++  +
Sbjct: 468 VFAMLTSYLLSRTLVAIL 485



 Score = 52.0 bits (122), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 52/144 (36%), Gaps = 5/144 (3%)

Query: 690  WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            W      I  L L     +    +    F++ A+   +  +G +  + +++    ++   
Sbjct: 942  WVDPFVVIAALPLAFCGIVMSLFITSTAFSIPALFGAIMSVGVASANSILLVTFAKE--H 999

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
               T  S  +    + +  L   + T+ A F+ ++PMA+    G     + A  +  GI 
Sbjct: 1000 REATGCSASEAALMAGHTRLRPVLMTASAMFLGLIPMAIGAGEGAEQNAALARAVMGGIG 1059

Query: 807  VAASSSIFIAAPILLFIYDWRAKN 830
            +   S++     +   +     K 
Sbjct: 1060 MGTVSTLLFVPLLYTLLRRNPIKP 1083


>gi|317060233|ref|ZP_07924718.1| translocase subunit SecD [Fusobacterium sp. D12]
 gi|313685909|gb|EFS22744.1| translocase subunit SecD [Fusobacterium sp. D12]
          Length = 411

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 134/389 (34%), Positives = 221/389 (56%), Gaps = 22/389 (5%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +         +   A+ + +E++ +RI+ +G++ES++Q  G +R++I+LPG  +    
Sbjct: 40  VVLEAVPEPGQSLDKDAMGRLIEVLDRRINGLGVAESSVQMAGDNRVIIELPGVDNTEDA 99

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            +++G TA + F     +                         +  ++G  L  A  ++ 
Sbjct: 100 VKMVGKTALLEFKLKQED---------------------GSLGETLLTGGALKKADVSY- 137

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +P +       GAR F ++TR+N+G+ LA+ LDG V TAPVIN  IPSG   I+GN
Sbjct: 138 DNLGRPQIQFEMTPEGAREFAKITRENVGRQLAITLDGEVQTAPVINGEIPSGSGVITGN 197

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           +T+E A   A +L AG+LP+K  I E R VGA LG +SI +   A +  +VLI LFMI+ 
Sbjct: 198 YTVEEAKATATLLNAGALPVKAEIAEIRTVGASLGDESIAQSKQAGMLAIVLIWLFMILF 257

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G+VAD ++     +T  +L+ + ATLTLP IAG++L  G+AVD+N+++ ERI+EE 
Sbjct: 258 YRLPGIVADIALVFFGFITFGVLNFIDATLTLPGIAGLILSAGMAVDANVIIFERIKEEL 317

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           +   ++  +++ GF++ +  IFDSNIT LI T++LF FG G V+GFA+T+ +  L SMFT
Sbjct: 318 QFGNTIRNAINSGFNKGFVAIFDSNITTLIITIILFTFGTGPVKGFAVTLTIGTLGSMFT 377

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           AI+I + +++  +         +  +   
Sbjct: 378 AITITKVLLLNFVEIFGFTKPSLFGVKGK 406



 Score =  106 bits (264), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 73/168 (43%), Gaps = 4/168 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  +  E I +     +++ + + +++ + ++    + A   L+     T G        
Sbjct: 228 GASLGDESIAQSKQAGMLAIVLIWLFMILFYRLP-GIVADIALVFFGFITFGVLNFIDAT 286

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++   G +V+  V++++R+++ ++      + R+ I+   N+       +++
Sbjct: 287 LTLPGIAGLILSAGMAVDANVIIFERIKEELQF---GNTIRNAINSGFNKGFVAIFDSNI 343

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              I  + +  +G   +  FA+ +  G + +  ++I I   +LL   +
Sbjct: 344 TTLIITIILFTFGTGPVKGFAVTLTIGTLGSMFTAITITKVLLLNFVE 391



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQN 96
                LGLDL+GG ++VLE   +         +    + L   +   G+   S++    N
Sbjct: 25  SKPTKLGLDLKGGVYVVLEAVPEPGQSLDKDAMGRLIEVLDRRINGLGVAESSVQMAGDN 84

Query: 97  KITLSFADSRFKENIADKVTLFLQGVN 123
           ++ +        E+    V        
Sbjct: 85  RVIIELPGVDNTEDAVKMVGKTALLEF 111


>gi|298507434|gb|ADI86157.1| heavy metal efflux pump, RND family, inner membrane protein, CzcA
           family [Geobacter sulfurreducens KN400]
          Length = 1023

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/548 (13%), Positives = 165/548 (30%), Gaps = 51/548 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   +V+L ++I  +G L+AL     +  +D  P                   ++ E   
Sbjct: 12  NRLIVVVLSALILVVGTLVAL-----RMPVDVLPDLTAPT-----------VTIMTEAQG 55

Query: 63  --DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   + M  +   +                + + + F            V   +Q
Sbjct: 56  MAPEELETLVTMPVESAVNGATGVRRVRSYTVAGLSTVWVEFTWGTDIYRARQVVNEKMQ 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
           G+ + L       L   ++     + +   +         E +   +R+R   +      
Sbjct: 116 GLAASLPAGVMPTLTPISSIMGEVMYIGLTSDRHSPMELKETADFAVRRR---LLAVPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q +       Q   E DP  L     +  ++       N +    +             
Sbjct: 173 SQVVVLGGEKRQYQVELDPLGLASFGVSVGEVLEAVRGNNENFAAGIMKS---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G                    +     G                  V D 
Sbjct: 223 ---------GGQDYLIRGVGRYQTADDLGRVVVSTRNGIPVLVRDIARVAVGSAVRVGDA 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            V T P I  ++       +   T    G LA + +     ++L     R       +  
Sbjct: 274 SVDTKPGILISVAKHPETNTLTLTGLLDGKLADIRKGLPAGMELRGDIFRQSDFIQRAMD 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +      A LV+ ++F+ +   +   ++  ++ L++I  +  L L   ++   ++ G+
Sbjct: 334 NIRKVLVEGAVLVVAIIFLFLGSMRTTFISIVAMPLSLIFAIFTLRLFDISINTMTLGGM 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG+ VD  I+  E +    R+N +   +        +        S+I ++ +  ++
Sbjct: 394 AIAIGVIVDDAIIDVENVYRRLRENGAKPEARREPAGKVIFDASKEIRSSIVNATLIIVL 453

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             + LFF     G  ++   I+  +SI  S+  A+++  A+  +++   +          
Sbjct: 454 VFLPLFFLSGVEGRLLKPLGISYMVSIGASLLVALTVTPALCSYLLPRARFLDRHDEGRV 513

Query: 530 RFFLIPDC 537
             +L    
Sbjct: 514 FTWLQNAY 521



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/164 (15%), Positives = 54/164 (32%), Gaps = 8/164 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V  + + + I             +I  + L +   +    LF I  N   +  +   IG 
Sbjct: 340 VEGAVLVVAIIFLFLGSMRTTFISIVAMPLSLIFAIFTLRLFDISINTMTLGGMAIAIGV 399

Query: 733 SVNDKVV----VYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
            V+D ++    VY R+R+N             +I  +  E     V  ++   +  LP+ 
Sbjct: 400 IVDDAIIDVENVYRRLRENGAKPEARREPAGKVIFDASKEIRSSIVNATLIIVLVFLPLF 459

Query: 788 VWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              G    ++    I     I  +   ++ +   +  ++     
Sbjct: 460 FLSGVEGRLLKPLGISYMVSIGASLLVALTVTPALCSYLLPRAR 503



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/158 (18%), Positives = 73/158 (46%), Gaps = 10/158 (6%)

Query: 674  IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
            ++S + + + +++ F+ +  +G I  + L +    G  A+F  G   N++ +   +TL G
Sbjct: 869  LVSFLFIGLVLYLEFRSFRDVG-IVMVNLPLAFIGGIVAVFITGGVINVSTLVGFITLFG 927

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +V + +++    R    L    +   + +D+   E L   V T++AA ++++P AV   
Sbjct: 928  IAVRNGILLVSHYR---HLMEEGLHLAEAVDRGSRERLRPVVMTALAAGLALIPFAVAAH 984

Query: 790  --GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              G  ++   AI +  G++ +   ++ +   +      
Sbjct: 985  KPGNEILSPLAIVILGGLLSSTVLNMVVLPSLYRRFGR 1022


>gi|146310815|ref|YP_001175889.1| CzcA family heavy metal efflux protein [Enterobacter sp. 638]
 gi|145317691|gb|ABP59838.1| heavy metal efflux pump, CzcA family [Enterobacter sp. 638]
          Length = 1038

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/551 (10%), Positives = 135/551 (24%), Gaps = 48/551 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN   +++   ++   G          ++ LD  P       I                
Sbjct: 10  LRNRLLVILAACVMAGWGWWAV-----QRAPLDALPDLSDVQVI---------VKASYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +   +          +                + + F D         +V  +L 
Sbjct: 56  KAPQVIEDQVTWPLTTSMLSVPGAKTVRGFSMFGDAYVYVLFEDGTDLYWARSRVLEYLS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V S+L    K +L    T                     +           ++    + 
Sbjct: 116 QVQSQLPAGVKASLGPDATGVGWIYEY-ALVDRTGKHSLADLRALQDWTLKFELKTVPNV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ Q      P ++R L  T  ++       N    G +  +          
Sbjct: 175 SEVASIGGMVRQYQIVVTPEKMRALNITHGQIVSAVQAANKESGGALLEMGEAEYMVRTT 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +                            +     G     +        P       
Sbjct: 235 GYLRT-------------------LDDFRNVVITTRDGIPVLLKDVATVGLGPEIRRGVA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   +   +   +   T+       + L+         +           S  
Sbjct: 276 ELNGEGEVAGGVVVMRYGQNALETLHAVKEKLSALQKTLPEGVEIVPVYDRSKLIEESVK 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V++V  + + + +  LVA  S+ L ++    ++   G    + S+ GI
Sbjct: 336 TLTHKLLEEFAVVVLVCALFLFHFRSALVAIVSLPLGILGAFVVMHYQGINANIMSLGGI 395

Query: 421 VLGIGLAVDSNILVNERIR----EENRKNQSVFCSLDMGFSRAYSTIFDSN--------- 467
            + IG  VD+ I++ E +     +    +     +    +  A     +           
Sbjct: 396 AIAIGAMVDAAIVMIENMHKVLEQWRHDHPDEEPASADYWRLAERAAVEVGPALFCSLLI 455

Query: 468 -ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
              + I    L    G      A T   ++ ++    I+++  +M + IR K        
Sbjct: 456 ITLSFIPVFSLEAQEGRMFSPLAFTKTWAMAMAAGLGITLIPVLMGYFIRGKIPDEKANP 515

Query: 527 PLSRFFLIPDC 537
                  + + 
Sbjct: 516 INRFLIRLYEP 526



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 78/240 (32%), Gaps = 12/240 (5%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             L  + + +               +         ++ V EM ++   +I     +  +  
Sbjct: 799  ELADIVVTEGPPMLKSENARLSNWIYVDLRGRDLKSAVTEMQQRVAEKIALPQGVSLSWS 858

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGFFALFG 715
               +       K  + + I+ + + I +W+ FK    +  I  TL   +   +    L G
Sbjct: 859  GQFEYLERATEKLKIVLPITLMIIFILLWLTFKRISDVLLIMGTLPFALIGGVWLLWLLG 918

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVY-------DRMRKNMKLYTTSISFRDLIDKSINET 768
               ++      + L G +    V++        D+ R+        +  R  I +     
Sbjct: 919  YNLSVAGAVGFIALAGVAAEFGVIMVLYLNQALDKYRQRDPEGGNRMVMR-AIHEGAVLR 977

Query: 769  LGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   V T       +LP+      G  V+   A PM  G+V A   S+ +   +   ++ 
Sbjct: 978  VRPKVMTVATIMAGLLPIMWGGGSGSEVMQRIAAPMIGGMVTAPLLSMLVIPALYKLLHK 1037



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 62/166 (37%), Gaps = 11/166 (6%)

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
           + +L+     F +  AL AI +L L I          GI  N+ ++  +   IG  V+  
Sbjct: 347 VVVLVCALFLFHFRSALVAIVSLPLGILGAFVVMHYQGINANIMSLGGIAIAIGAMVDAA 406

Query: 738 VVVYDRMRKNMKLYTTSISFRD--------LIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +V+ + M K ++ +       +        L +++  E       + +   +S +P+   
Sbjct: 407 IVMIENMHKVLEQWRHDHPDEEPASADYWRLAERAAVEVGPALFCSLLIITLSFIPVFSL 466

Query: 790 GGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                  F   A    + + +AA   I +   ++ +    +  + +
Sbjct: 467 EAQEGRMFSPLAFTKTWAMAMAAGLGITLIPVLMGYFIRGKIPDEK 512


>gi|114049340|ref|YP_739890.1| CzcA family heavy metal efflux protein [Shewanella sp. MR-7]
 gi|113890782|gb|ABI44833.1| heavy metal efflux pump, CzcA family [Shewanella sp. MR-7]
          Length = 1045

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/590 (11%), Positives = 162/590 (27%), Gaps = 40/590 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L  +I  + L +     L ++ LD  P       I                     V   
Sbjct: 14  LMVLIIAMMLTVWGVQELRKTPLDALPDLSDVQVI---------IKTPYPGQAPKLVEEQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  ++S+L   
Sbjct: 65  VTYPLSTAMLAVPGAKTVRGFSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQISSRLPQG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            + +L    +                     +           ++       +      +
Sbjct: 125 VQPSLGPDASGVGWVFEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVSEVATVGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
                   +P ++       A +       N+   G +  +         +   +   + 
Sbjct: 184 EQTYQIVLEPDKMAIYKLDIAAVKQAIDKANSEAGGSVVEMAEAEYMVRAKGYRQTLEDF 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
             I L   + +      K V  +       R   E+  +                   + 
Sbjct: 244 REIPLGITSPSGTGLLLKDVATVRKGPASRRGIAELDGE-----------------GEVV 286

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   +   +   TI+        L+AG       I           S           
Sbjct: 287 GGIVVMRYGENALATIDAVKTKLEELKAGLPEGVEIIPTYDRSQLIQKSVDNLFSKVVEE 346

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI + IG  VD
Sbjct: 347 MLVVGLVCLLFLLHARSTLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIGAVVD 406

Query: 430 SNILVNERIREENRKN---QSVFCSLDMGFS-------RAYSTIFDSNITALIATVVLF- 478
             I++ E + +             S+   +             +F S I   ++ V +F 
Sbjct: 407 GAIVMIENLHKHLEHFKAEHDREPSVKEHWRIVTEASIEVGPALFFSLIIITLSFVPVFA 466

Query: 479 --FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  +   +I++V  +M + IR K               +  
Sbjct: 467 LEAQEGRLFSPLAYTKTFAMAAAALLSITLVPILMGYFIRGKIPSERSNPISRVLIALYQ 526

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 ++     + ++++    +   +   G  +    + G  L +   
Sbjct: 527 PALKLVLKFPKVTILVALVTLASAWYPMTRMGSEFMPALEEGDLLYMPTA 576



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 80/234 (34%), Gaps = 13/234 (5%)

Query: 610  NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR-- 667
                E   L+   +   +  +    +   K  + + + +    +    G     + +   
Sbjct: 812  MLKSENGRLISWVFIDIEGTSIGEYIATAKTALEQELVVPARYSYSFAGQYEYMQRVDAK 871

Query: 668  -KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
             K ++ + +  I +L+ +        ++  + +L   +  +     L     ++     +
Sbjct: 872  LKQVIPMALGVIFILLMMTFGSTMQASII-MLSLPFALVGSTWLLYLLDYNISVAVAVGM 930

Query: 727  LTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
            + L G +    VV+        + R+    Y T    ++ + +     +     T    F
Sbjct: 931  IALAGVAAEFGVVMLVYLNNAIKHRQEKNTYHTVDDLKEALIEGAVMRIRPKAMTVATIF 990

Query: 781  ISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
              +LP+      G  ++   A PM  G+V A   S+F+   + L IY  +   A
Sbjct: 991  FGLLPIMWGAGSGNDMMQKIAAPMVGGMVTAPILSLFVLPALYLLIYARKLNKA 1044



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 84/231 (36%), Gaps = 15/231 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +       A    LE +K  + E V +    +   +  K    L  K +  
Sbjct: 287 GGIVVMRYGENALATIDAVKTKLEELKAGLPEGVEIIPTYDRSQLIQKSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNM----KLYTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K++      +    S ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEHFKAEHDREPSVKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+          F   A    F +  AA  SI +   ++ +    +  + R
Sbjct: 463 PVFALEAQEGRLFSPLAYTKTFAMAAAALLSITLVPILMGYFIRGKIPSER 513


>gi|152977615|ref|YP_001377132.1| acriflavin resistance protein [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152026367|gb|ABS24137.1| acriflavin resistance protein [Bacillus cytotoxicus NVH 391-98]
          Length = 1039

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/684 (10%), Positives = 193/684 (28%), Gaps = 34/684 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTTAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    +E    L    +   S  Q  + I + +   +  E    +V   + 
Sbjct: 55  ATPQEVADKISKPMEEQLQNLNGVNVVSSSSYQNASSIQVEYDFDKNMEKAETEVKEAIA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                + ++ +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVIALSVASKDEP--LATLTEKVEKSIVPALKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNIIKGSDVSLPLGLYTFKDSEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG-------KP 293
             +     +  + +   +A  +            +              +        K 
Sbjct: 231 GNITTVQALKEMKIPTISAASNQSGPGATSSPQTEAPQMNPGMTAGIPTVNLEEIADVKE 290

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +                         +    +         +          I       
Sbjct: 291 VGKAESISRTNGKEAIGIQVVKATDANTVDVVNAVKDKVKDIEKKY-KDLEIISTFDQGT 349

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S           A   +I++ + +   +  L++  SI L++++ + +L  +  TL 
Sbjct: 350 PIEKSVDTMLSKAIFGAIFAIIIIMLFLRNIRTTLISVVSIPLSLLIAILVLKQMDITLN 409

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV---FCSLDMGFSRAYSTIFDSNITA 470
           + ++  + + IG  VD +I+V E I       +        + +     +  I  S I  
Sbjct: 410 IMTLGAMTVAIGRVVDDSIVVIENIYRRMSLPEEPLRGKDLIRVATKEMFIPIMSSTIVT 469

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           +   + L       G     FA+T+  ++L S+  AI+IV  +   + + + M+  +++ 
Sbjct: 470 IAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAITIVPMLAHSLFKKESMREKEVHH 529

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
             +   + +        A    +  S +  +  +  L    +          +  ++A  
Sbjct: 530 KEKPSKLANGYKRVLNWALNHKIITSSIAVLLLVGSLALVPVIGVSFLPDEEEKMMIATY 589

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             D      +++++     +  +F  +K+         G++             +     
Sbjct: 590 NPDPGQTLEDVKAIATK--AETHFQNKKDVKTIQFSLGGENPMSPGKTNQAMFFVQYDND 647

Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671
           +   +  +    K  +++  KG  
Sbjct: 648 IKNFEKEKEQVMKDLQKMTGKGEW 671



 Score = 73.2 bits (177), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 61/152 (40%), Gaps = 3/152 (1%)

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +         L ++ ++ L +   +       I  N+  + A+   IG  V+D +VV + 
Sbjct: 374 MLFLRNIRTTLISVVSIPLSLLIAILVLKQMDITLNIMTLGAMTVAIGRVVDDSIVVIEN 433

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIP 800
           + + M L    +  +DLI  +  E     + +++      LP+ +     G +   FA+ 
Sbjct: 434 IYRRMSLPEEPLRGKDLIRVATKEMFIPIMSSTIVTIAVFLPLGLVKGMIGEMFLPFALT 493

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + F ++ +   +I I   +   ++   +   +
Sbjct: 494 IVFALLASLLVAITIVPMLAHSLFKKESMREK 525



 Score = 72.8 bits (176), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 96/245 (39%), Gaps = 8/245 (3%)

Query: 592  SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
             V   ++ +++ G+ S      +      +  +            + K+     +P    
Sbjct: 799  EVAVKDVMTVKEGETSNTVTHRDGRIYASVNAKITSDDVSKASAALQKEIDKMDLPSGVE 858

Query: 652  QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLILDITKTLGF 710
             +   V   I     + G+  ++ +   +   + + F    A  AI  +L   I   L  
Sbjct: 859  VSMGGVTKDIQESFTQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPFTIIGALVA 917

Query: 711  FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLG 770
              + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + ++ +  L 
Sbjct: 918  LLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKEQEGLSTREALLEAGSTRLR 974

Query: 771  RSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
              + T++A   +++P+A+ + GS +      + +  G+  +   ++ I   +   +  +R
Sbjct: 975  PILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGGLTSSTLLTLLIVPIVYEVLSKFR 1034

Query: 828  AKNAR 832
             K  +
Sbjct: 1035 KKTVK 1039


>gi|226228289|ref|YP_002762395.1| heavy metal efflux pump [Gemmatimonas aurantiaca T-27]
 gi|226091480|dbj|BAH39925.1| heavy metal efflux pump [Gemmatimonas aurantiaca T-27]
          Length = 1041

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/551 (11%), Positives = 160/551 (29%), Gaps = 50/551 (9%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
              +++ ++      ++     +  + LD FP   P               + ++ +   
Sbjct: 10  RLRIVVVALTVLA--IVVGTRIVRDAPLDVFPEFSPPL-------------VEVQTEAPG 54

Query: 65  FVNGFLQMYSD-ELRSFLKK---EGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                ++      +   L                 + + L F            V   L 
Sbjct: 55  LSTEEVEALVTTPIEQALAGTPHIETLRSKSVLGLSSVVLIFERGTDLLVARQFVGERLA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +   L    +  +L++       ++    +         + +  +      ++      
Sbjct: 115 RLQGTLPAVARPPVLLSPLSSTSRVLKVGMSSK--TMSQTDMTTLVRFTVRPRLMSVPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                  +   QL    DP RLR    T  +++         + G    V   R S   +
Sbjct: 173 ANVAVWGQRDRQLQVLVDPERLRANRVTLDEVTRATGEAVAVRAGGFIDVPNQRFSVAQR 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             V    +++   +                                   + +     +  
Sbjct: 233 SEVHTGADLAAAPVA--------------------FRNRAALLLGDVTQVTEGNPPPIGN 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            ++        I   +   +            A LR     ++++    R       S  
Sbjct: 273 AIINDGPGILLIVEKQPWGNTLEVTRGVEAALAALRPAMPDVEVDATIFRPATFIEMSLH 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I   LV+IVL + +   +  +++  +I L+++    ++   G T+    +AG+
Sbjct: 333 NLNRALLIGCVLVVIVLGLFLRDWRTAVISLTAIPLSLLAAAIVMRYRGGTIDTMVLAGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITALIAT 474
           V+ +G  VD  ++  E I    R N      +S F  +        S +  +++   +  
Sbjct: 393 VIALGEVVDDAVIDVENIVRRLRLNREAGSPRSAFLVVLQASIEVRSAVVYASLIVSLVF 452

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + +FF     G   R  A    ++IL S+  A+ +  A+ + ++        +   ++  
Sbjct: 453 LPVFFLSGLAGAFFRPLAAAYVVAILASLLVALIVTPALSLLLLPKAVAHHSEAPLVTWL 512

Query: 532 FLIPDCIAIQF 542
                 +  +F
Sbjct: 513 KAHYRRLLPRF 523



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 86/239 (35%), Gaps = 9/239 (3%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
            V    E       +    DG    L+  +   G+++  TR +E     +   +P   + 
Sbjct: 258 DVTQVTEGNPPPIGNAIINDGPGILLIVEKQPWGNTLEVTRGVEAALAALRPAMPDVEVD 317

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFF 711
            T           +      ++I  + ++I +      W  A+ ++T + L +       
Sbjct: 318 ATIFRPATFIEMSLHNLNRALLIGCVLVVIVLGLFLRDWRTAVISLTAIPLSLLAAAIVM 377

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTTSISFRDLIDKSINE 767
              G   +   +A ++  +G  V+D V+    +  R+R N +  +   +F  ++  SI E
Sbjct: 378 RYRGGTIDTMVLAGLVIALGEVVDDAVIDVENIVRRLRLNREAGSPRSAFLVVLQASI-E 436

Query: 768 TLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                VY S+   +  LP+       G+     A      I+ +   ++ +   + L +
Sbjct: 437 VRSAVVYASLIVSLVFLPVFFLSGLAGAFFRPLAAAYVVAILASLLVALIVTPALSLLL 495



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 66/159 (41%), Gaps = 8/159 (5%)

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + + +   F     A+    +L   +   +    L G   +L ++   +T+IG + 
Sbjct: 878  AMLGIFLILHADFGSMRLAVLVFGSLPFAVIGGVVAVWLTGGVLSLGSIVGFVTVIGIAA 937

Query: 735  NDKVVVYDRMRKNMKLYTTSISF-RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG-- 791
             + +++    R     +   ++F R L+ +   E L     T++   ++++P+ VWG   
Sbjct: 938  RNGIMLVSHYR--HLEHEEGMTFGRGLVLRGAEERLAPITMTALVTALALVPLIVWGDRP 995

Query: 792  --SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
               +    AI +  G+V +   ++F+   + L     + 
Sbjct: 996  GHEIEHPMAIVILGGLVSSTLLTLFLMPALYLRYGQAQQ 1034


>gi|148254841|ref|YP_001239426.1| cation efflux system protein cusA [Bradyrhizobium sp. BTAi1]
 gi|146407014|gb|ABQ35520.1| Cation efflux system protein cusA [Bradyrhizobium sp. BTAi1]
          Length = 1057

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/584 (12%), Positives = 161/584 (27%), Gaps = 40/584 (6%)

Query: 12  SMICCIG---LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            ++   G      A    L    LD  P       I          +          +  
Sbjct: 13  LLLVLFGTGFAAAAGFYALIHLPLDAIPDLSDTQVI---------VYTEYSGQAPQVIED 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +          + K  +         + + + F D         +V  FL    S+L  
Sbjct: 64  QVTYPLTTAMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDIYWARSRVMEFLNSAASRLPA 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                +    T        +  + +  ++                +  +E   +      
Sbjct: 124 GVTPTIGPDATGVGWVYQYAVMSKELNLADTRTLQD---WNLKFALAKAEGVAEVASIGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            + Q     DP R+R    +  K+       N    G    +         +  ++   +
Sbjct: 181 FVKQYNVVLDPQRMRDRGISMQKIRDAIRASNADVGGRTVELSEFEYVIRGKGYIKSIDD 240

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +                      +  +  G              P        +     +
Sbjct: 241 LG-------------------NIVLKNSGGTPVLLRDVAHVELGPDERRGIAELNGEGEV 281

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +  ++    IE        + +        +           +    K T   
Sbjct: 282 ASGIVLQRFGVNALDVIENVKKRFKDIASSLPKSVEIVPVYDRSNLIYAAIDTLKHTLLE 341

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + +V  V  + +L+ +  LVA   + + V++    + LLG    + S+ GI + IG  V
Sbjct: 342 ESLVVAFVCIVFLLHVRSALVAILMLPVGVLMAFGAMKLLGLGSNIMSLGGIAIAIGAMV 401

Query: 429 DSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           D+ I++ E   +     + +QS    L    +     +F S +   ++ + +F      G
Sbjct: 402 DAAIVMIENAHKHLERAKPDQSRVQILIDAAAEVGPALFFSLLIITVSFMPIFTLESQEG 461

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   S+  +   ++++V A+M+  +R + +             I   +    
Sbjct: 462 RLFSPLAFTKTFSMAAAALLSVTLVPALMVIFVRGRIVPEQRNPINRFLIWIYRPVIKSV 521

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           +RA+   +  ++     S+      G  +      G  L +   
Sbjct: 522 LRAKMLVILAAVAVLAISVWPARQLGTEFMPSLNEGTLLYMPTT 565



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 58/155 (37%), Gaps = 3/155 (1%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S +   + I        AL AI  L + +    G   L G+  N+ ++  +   IG  V+
Sbjct: 343 SLVVAFVCIVFLLHVRSALVAILMLPVGVLMAFGAMKLLGLGSNIMSLGGIAIAIGAMVD 402

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
             +V+ +   K+++      S   ++  +  E      ++ +   +S +P+         
Sbjct: 403 AAIVMIENAHKHLERAKPDQSRVQILIDAAAEVGPALFFSLLIITVSFMPIFTLESQEGR 462

Query: 796 SF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            F   A    F +  AA  S+ +   +++     R
Sbjct: 463 LFSPLAFTKTFSMAAAALLSVTLVPALMVIFVRGR 497



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 79/262 (30%), Gaps = 20/262 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             + + +   V L  V     +     I  +N        V ++ +   S        + +
Sbjct: 777  LVPMPSGGAVPLGEVAKIEPARGPTSIRTENGQLATYIYVDIRDRDIGSYVGDAQRAVTE 836

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                                + +  L     + + ++   + + +++ F+       I  
Sbjct: 837  SIQFPAGYYVVWSGQYEYLQRAAARLK----IVIPVTLTIIFLLLYLNFR-AMTETLIVM 891

Query: 700  LILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVV---YDRMRKNMKLYT-- 752
            L L      G       G   ++      + L G +    VV+    D     M+     
Sbjct: 892  LSLPFALVGGIWMMWWLGFNLSVAVAVGFIALAGVAAETGVVMLIYLDHALAEMRARHAA 951

Query: 753  -----TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
                 T    +D I +   E +   + T +A    +LP+      G  ++   A+PM  G
Sbjct: 952  ENRTLTRQDLQDAIMEGAVERVRPKMMTVVAIMAGLLPIIWSTGTGSEIMQRIAVPMIGG 1011

Query: 805  IVVAASSSIFIAAPILLFIYDW 826
            ++ +   ++ +   I   +   
Sbjct: 1012 MISSTLLTLIVIPAIFGLVKGR 1033


>gi|103487874|ref|YP_617435.1| heavy metal efflux pump CzcA [Sphingopyxis alaskensis RB2256]
 gi|98977951|gb|ABF54102.1| Heavy metal efflux pump CzcA [Sphingopyxis alaskensis RB2256]
          Length = 1044

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 65/607 (10%), Positives = 154/607 (25%), Gaps = 45/607 (7%)

Query: 13  MICCIGLLIALPNF--LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
           ++    L++ L     +  + +D  P       I                     V   +
Sbjct: 15  LVVAAALILTLVGIAAVRTTPVDAIPDLSDVQVI---------IRTTYPGQAPRIVEDQV 65

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
                     +    +         + + + F D         +V  +L  V  KL    
Sbjct: 66  TYPISSTMLSVPGARVVRGYSFVGDSFVYVLFDDDTDLYWARSRVLEYLSQVQGKLPDGA 125

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
             ++    T                     E           ++       +      ++
Sbjct: 126 TASIGPDATGVGWVYEY-ALVDKSGRHDLAELRSIQDWFLRYELKAVPDVAEVATIGGMV 184

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            Q     DP +L     T  ++S      N    G    +            ++   +  
Sbjct: 185 KQYQIVLDPQKLASYGVTVREVSDALTAANQEAGGATVELAEAEYIVRASGYLKTLDDFR 244

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                              V I     G              P        +     +  
Sbjct: 245 A------------------VPIRTAAGGVPVTVGDIATVQIGPEMRRGIAELDGEGEVVG 286

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
            +   +   +    IE        L+A        +      G    +            
Sbjct: 287 GVIVMRQGKNAREVIENVRAKLDSLKASLPAGVEIVTTYDRSGLIDRAVENLSSKLIEEI 346

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            +V +V  + + + +  LVA  ++ L +++    +   G    + S+ GI + IG  VD+
Sbjct: 347 VIVALVCGLFLWHARSALVAILTLPLGILIAFIAMRAQGLNANILSLGGIAIAIGAMVDA 406

Query: 431 NILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +++ E   +   +               +  +    +     +F S +    + + +F 
Sbjct: 407 AVVMIENAHKHIERWTHENPDDKLEGAERWRVITGAAAEVGPALFLSLLIITFSFIPIFA 466

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  +   +I++V  +M ++IR K               +  
Sbjct: 467 LQGQEGRLFAPLAFTKTYAMAAAALLSITLVPVLMGWLIRGKIPDENANPINRWLTRLYR 526

Query: 537 CIA-IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
                   R +   +  +++F+     +    G       +G +     A   + ++   
Sbjct: 527 PGLDWVLARPKQALLIAALVFATSLWPMARLGGEFMPQMNEGDLLYMPSALPGISVAEAG 586

Query: 596 SNLESLQ 602
             L+   
Sbjct: 587 KLLQQTD 593



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/213 (17%), Positives = 74/213 (34%), Gaps = 14/213 (6%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 L+ +K  +   V + T  +   +  +    L  K I  ++I A+   +++W   
Sbjct: 302 ENVRAKLDSLKASLPAGVEIVTTYDRSGLIDRAVENLSSKLIEEIVIVALVCGLFLWHAR 361

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---- 744
               AL AI TL L I          G+  N+ ++  +   IG  V+  VV+ +      
Sbjct: 362 S---ALVAILTLPLGILIAFIAMRAQGLNANILSLGGIAIAIGAMVDAAVVMIENAHKHI 418

Query: 745 ----RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF--- 797
                +N            +I  +  E       + +    S +P+    G     F   
Sbjct: 419 ERWTHENPDDKLEGAERWRVITGAAAEVGPALFLSLLIITFSFIPIFALQGQEGRLFAPL 478

Query: 798 AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           A    + +  AA  SI +   ++ ++   +  +
Sbjct: 479 AFTKTYAMAAAALLSITLVPVLMGWLIRGKIPD 511



 Score = 42.0 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 84/245 (34%), Gaps = 7/245 (2%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             + + + L  V     +     +  +N        V  + +   ++ Q     + ++   
Sbjct: 791  PSRQQITLGTVADVRITDGPPMLRSENGRPVTWIYVDGRGRDLQTLVQDMQTAIAREVKL 850

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
                  +         + +  +  K +V V ++ I  L+Y+  R +   AL  + TL   
Sbjct: 851  PPGVSVSYTGQFEFLVRATERM--KIVVPVTLAVILGLLYLTFR-RLDEALLIMGTLPFA 907

Query: 704  ITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDK 763
            +T  L    L G   ++ +    + L G S    VV+   +++ +    T       + +
Sbjct: 908  LTGGLWLLYLLGYNQSVASAVGFIALAGVSAEFGVVMLIYLKQALAA-RTDGDVAAGVRE 966

Query: 764  SINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
                 +     T       + P+ +    G  V+   A PM  G++ A   S+F+     
Sbjct: 967  GALLRVRPKAMTVAVILAGLFPILIGTGTGSEVMSRIAAPMIGGMITAPLLSMFVIPAAY 1026

Query: 821  LFIYD 825
            L +  
Sbjct: 1027 LLMRR 1031


>gi|254501788|ref|ZP_05113939.1| heavy metal efflux pump, CzcA family [Labrenzia alexandrii DFL-11]
 gi|222437859|gb|EEE44538.1| heavy metal efflux pump, CzcA family [Labrenzia alexandrii DFL-11]
          Length = 1059

 Score =  122 bits (305), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/652 (11%), Positives = 169/652 (25%), Gaps = 36/652 (5%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  +     + +A    + ++ +D  P       I                     V   
Sbjct: 14  IIMLAIAAMIAVAGVWAVRETPVDAIPDLSDVQVI---------VRTPYPGQAPQVVEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  + + L   
Sbjct: 65  ITFPLATAMLAVPGASDVRGFSFFGDSYVYIVFEDGTDLYWARTRVLEYLGQITASLPDG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               L    T                     +           ++       +      +
Sbjct: 125 VSPQLGPDATGVGWIYQY-ALIDRTGNHDLSQLRALQDWFLKYELQTVNGVSEVATIGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     DP++LR    T A++       N    G +  +        +   V++  ++
Sbjct: 184 VKQYQVVVDPNKLRAYDITLAQIRGAIQAANRETGGSVIEMGEAEFMVRSTGYVDELQDL 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                                 +  ++ GA        +    P      G         
Sbjct: 244 ------------------AKAPLMVNDRGAALTLGDVAEIRLGPEMRRGVGEFGGEGDAV 285

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +   +   +   TI+        LR         +      G    +    +      
Sbjct: 286 GGVVILRWGGNALATIKAVEARIGELRGSLPEGVEIVTTYDRSGVIERAIDNLQKKLTEE 345

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V++V    +L+ +  LV   S+ L +     ++ L G    + S+ GI + IG  VD
Sbjct: 346 FIVVVLVCAAFLLHLRSSLVILVSLPLGIAAAFIIMKLQGVNANIMSLGGIAIAIGAMVD 405

Query: 430 SNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           + I++ E +          N++ +  +    S     +F S     ++ + +F      G
Sbjct: 406 AAIVMIEAMHRRLENEKLTNENRWRIVGECASEVGPALFFSLAIITVSFLPVFVLESQEG 465

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
              +  A T   ++  +   +I++V  +M + +R + +             +        
Sbjct: 466 RLFKPLAFTKTYAMAAAAILSITLVPVLMGYFVRGRILPESRNPLNRIVIWLYRPFLDAA 525

Query: 543 MRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
           +   +    ++          L            +G           V +   R  L+  
Sbjct: 526 VAWPWATTFLAAALVASMWWPLQRIGTEFMPELNEGDFLYMPTLYPGVSIGKAREVLQQS 585

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
                +          L R +     +        +  K  +E  P  T+  
Sbjct: 586 DRLIATVPEVLTVHGKLGRAETATDPAPLTMIETTIQLKPQSEWRPGMTMDG 637



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 85/283 (30%), Gaps = 16/283 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
                 I L +        +    + +   +   + L  +         G I  +N     
Sbjct: 756  MERFPINLRYPQDWRNSPERLRDLPVVTPSGAHIPLGALAEIKVVDGPGMIRSENARRTG 815

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               + +  +            +                      ++   L       ++I
Sbjct: 816  FVFIDIAGRDLGGYVAEARQVVANNVQLPPGYSIAWSGQYEYIQRMQERLKLVAPATLLI 875

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +++++         +  +  L + +   + F      + ++  +   + L G +V 
Sbjct: 876  --ITLMLFMAFNRVIEVGII-LAALPVALAGGVWFLWHLDFDMSVAVIVGFIALAGVAVE 932

Query: 736  DKVVVY-------DRMRKNMKLYTTSISFRDLIDKSINETLGRS---VYTSMAAFISVLP 785
              +V+        D+ +  +K    +++ +D+ D      L R    V T    F  ++P
Sbjct: 933  TAIVMLLYLNLAWDKRKTAVKAEGRTMTTQDVEDVVFEGALLRVRPKVMTVATIFAGLIP 992

Query: 786  MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +      G  ++   A PM  G+  A   ++F+   I +    
Sbjct: 993  IMYGDGTGSEIMQRIAAPMVGGMATATLLTLFVIPAIFVIWKR 1035



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 59/156 (37%), Gaps = 4/156 (2%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             + +L+          +L  + +L L I        L G+  N+ ++  +   IG  V+
Sbjct: 346 FIVVVLVCAAFLLHLRSSLVILVSLPLGIAAAFIIMKLQGVNANIMSLGGIAIAIGAMVD 405

Query: 736 DKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS-- 792
             +V+ + M + +     T+ +   ++ +  +E      ++     +S LP+ V      
Sbjct: 406 AAIVMIEAMHRRLENEKLTNENRWRIVGECASEVGPALFFSLAIITVSFLPVFVLESQEG 465

Query: 793 -VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +    A    + +  AA  SI +   ++ +    R
Sbjct: 466 RLFKPLAFTKTYAMAAAAILSITLVPVLMGYFVRGR 501


>gi|253996846|ref|YP_003048910.1| CzcA family heavy metal efflux pump [Methylotenera mobilis JLW8]
 gi|253983525|gb|ACT48383.1| heavy metal efflux pump, CzcA family [Methylotenera mobilis JLW8]
          Length = 1042

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/605 (9%), Positives = 151/605 (24%), Gaps = 66/605 (10%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  WL++L ++      + +      +  +D  P                 +++ ++++ 
Sbjct: 11  NQRWLIMLIALAIAALGVFS----YQKLPIDAVPDI---------------TNVQVQINT 51

Query: 63  DDF------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                        +    +   S L          R   +++T+ F +          V 
Sbjct: 52  VAAGYSPLEAEQRITYPVETAMSGLPGLEETRSISRYGLSQVTVVFKEHTDIYFARQLVN 111

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV------ISHAIEQSMEIIRQR 170
             +     KL       +  T+T      + +    +             +         
Sbjct: 112 ERISQAKEKLPAGILPEMGPTSTGLGEIYMWTVEAKEGALKAGGTPYSPTDLREIQDWII 171

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
             Q+       +         Q      P RL         +       N +        
Sbjct: 172 KPQLRNVPGVNEINTIGGYAKQYQVSPYPDRLVAHGLALKDVVEALENNNANMGAGYIEK 231

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
                  G QYL+    ++S              +   + ++                ++
Sbjct: 232 ------SGEQYLIRVPGQLS--------------SMSDINNVVVSTKLGIPIRIKDVADV 271

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
                +           +           +            + +        +      
Sbjct: 272 QLGKELRSGAASENGEEVVIGTVFMLVGENSRTVSAAVDKRISEINKTLPTGVVAKTVYD 331

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                  + +  K   +  A LV+ VLF+ +   +  ++    I L ++ T   +     
Sbjct: 332 RTILIDKAINTVKKNLSEGALLVVAVLFLFLGNFRAAVITMLIIPLAMLFTFTGMVTGKV 391

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAY 460
           +  L S+  +  GI   +D  +++ E        +Q+           F  +      A 
Sbjct: 392 SANLMSLGALDFGII--IDGAVVIVENCMRRLAHSQTILGRTLNREERFQEVFAAAREAR 449

Query: 461 STIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
             +    I  ++  + +F      G      A T+ +++L +M  +++ + A +   I  
Sbjct: 450 RPLIYGQIIIMVVYLPIFALAGVEGKMFHPMAFTVVIALLGAMLLSVTFIPAAIALFITG 509

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
              +  ++                            +   +  + +            +G
Sbjct: 510 AVTEKENVFIAWAKRAYEPIFHWSIGNKALVLTVTLVSVILSGLMVSRMGSEFMPNLNEG 569

Query: 578 GIQLG 582
            I + 
Sbjct: 570 DILIQ 574



 Score = 42.0 bits (96), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 75/245 (30%), Gaps = 18/245 (7%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             ++  +Q+G         E    V +          +R +     K    +  +     
Sbjct: 265 IKDVADVQLGKELRSGAASENGEEVVIGTVFMLVGENSRTVSAAVDKRISEINKTLPTGV 324

Query: 655 EIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
                     LI K I  V       + + + +       +  A+  +  + L +  T  
Sbjct: 325 VAKTVYDRTILIDKAINTVKKNLSEGALLVVAVLFLFLGNFRAAVITMLIIPLAMLFTFT 384

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT-------SISFRDLID 762
                 +  NL ++ A+    G  ++  VV+ +   + +    T              + 
Sbjct: 385 GMVTGKVSANLMSLGAL--DFGIIIDGAVVIVENCMRRLAHSQTILGRTLNREERFQEVF 442

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAP 818
            +  E     +Y  +   +  LP+    G    +    A  +   ++ A   S+ FI A 
Sbjct: 443 AAAREARRPLIYGQIIIMVVYLPIFALAGVEGKMFHPMAFTVVIALLGAMLLSVTFIPAA 502

Query: 819 ILLFI 823
           I LFI
Sbjct: 503 IALFI 507



 Score = 42.0 bits (96), Expect = 0.43,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 8/116 (6%)

Query: 695  GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            G I    +    T G  AL+  GI  +++A    + L G +V + +V+   +     L  
Sbjct: 906  GLIVFTGIPFALTGGVLALWLRGIPLSISAGVGFIALSGVAVLNGLVLISFI---TALRD 962

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGI 805
                  + I +     L   + T++ A +  +PMA+    G  V    A  +  GI
Sbjct: 963  EGKPLLEAIQEGALTRLRPILMTALVASLGFIPMAIATGTGAEVQRPLATVVIGGI 1018


>gi|154492604|ref|ZP_02032230.1| hypothetical protein PARMER_02238 [Parabacteroides merdae ATCC
           43184]
 gi|154087829|gb|EDN86874.1| hypothetical protein PARMER_02238 [Parabacteroides merdae ATCC
           43184]
          Length = 1015

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/625 (11%), Positives = 171/625 (27%), Gaps = 40/625 (6%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 35  PEEVERLVTFPVETAVNGAMDVRRVRSSSTTGFSVVWVEFDWGTDIYRARQIVSEKLAVV 94

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-------HAIEQSMEIIRQRIDQIG 175
           +  L  +  K  L   +     +++    +D   S         ++           ++ 
Sbjct: 95  SESLPENVGKPTLGPQSSILGEMMIIGLTVDDSKSGSRIAPTTQMDLRTIADWTIRPRLL 154

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
            +    Q       + +     DP+R++    +  ++        N          +  +
Sbjct: 155 STGGVAQVAVIGGDIKEYQILLDPARMKHYGVSLGEVL-AVTRNMNRNANGGVLYEYDNE 213

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                 L     E  G  +     +F                       +    IG    
Sbjct: 214 YIIRGVLSTANAEEIGKGVVKIVGDFP-----------------VLLENIATVKIGSKSP 256

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
            +        P +   +       + + T +   I+A + +     + ++    R     
Sbjct: 257 KLGTASERAKPAVLITVTKQPNTSTIDLTEKLDAIMADLQKNLPADVHVSTDIFRQSRFI 316

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S    K +    +  V+IVLF+ ++  +  +++  ++ L++++++  L  +G T+   
Sbjct: 317 DSSIDNVKNSLFEGSFFVVIVLFLFLMNIRTTVISLVALPLSLLVSILTLHYMGLTINTM 376

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSN 467
           S+ G+ + IG  VD  I+  E + +  R+N         S+   +          I +S 
Sbjct: 377 SLGGMAIAIGSLVDDAIVDVENVYKRIRENHLLPSDQQRSILEVVFDASREVRMPILNST 436

Query: 468 ITALIATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI- 523
           +  +++ V LFF  G   R      I   +++  S   A+++   +  +++  K      
Sbjct: 437 LIIVVSFVPLFFLSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLNRKPTDKKV 496

Query: 524 ---DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
                       L    +                LF +                 +G   
Sbjct: 497 EKEAWVARKLKDLYGKALNGALAHKNMVLGCTIGLFLVALGMFFTLGRSFLPPFNEGSFT 556

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + V +   + L          +   +             R +            +E    
Sbjct: 557 INVSSLPGISLEESDEMGRRAEELLMQVPEIQTVARKTGRAELDEHALGVNVSEIEAPFV 616

Query: 641 KITEIVPLSTIQNTEIVGPKISREL 665
                         E +       +
Sbjct: 617 LKDRSRDAVMNDVREKLSTISGANI 641



 Score = 81.7 bits (199), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 26/220 (11%), Positives = 82/220 (37%), Gaps = 10/220 (4%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                 +     ++  ++K +   V +ST    +      S + ++  +     S   ++
Sbjct: 279 TSTIDLTEKLDAIMADLQKNLPADVHVSTDIFRQSRFIDSSIDNVKNSLF--EGSFFVVI 336

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV-- 739
           +           + ++  L L +  ++      G+  N  ++  +   IG  V+D +V  
Sbjct: 337 VLFLFLMNIRTTVISLVALPLSLLVSILTLHYMGLTINTMSLGGMAIAIGSLVDDAIVDV 396

Query: 740 --VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---V 793
             VY R+R+N +       S  +++  +  E     + +++   +S +P+    G    +
Sbjct: 397 ENVYKRIRENHLLPSDQQRSILEVVFDASREVRMPILNSTLIIVVSFVPLFFLSGMEGRM 456

Query: 794 IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
           +    I     +  +   ++ +   +  ++ + +  + ++
Sbjct: 457 LVPLGIAFIVALFASTVVALTLTPVLCSYLLNRKPTDKKV 496



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 69/156 (44%), Gaps = 10/156 (6%)

Query: 681  LIYIWIRFKWYFAL-GAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDK 737
            +I++ +  ++  A    +  L L +    G F L     E ++ A+   ++L G +  + 
Sbjct: 862  VIFLLLYNEFKNAKESGVILLNLPLALIGGVFILKLTSGEVSIPAIIGFISLFGIATRNG 921

Query: 738  VVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI 794
            +++             ++  +  + +   + L   + T++++ ++++P+A+     G+ I
Sbjct: 922  MLLISHY--THLRTVENVPLKQAVLQGSMDRLNPILMTALSSALALIPLALNGDLPGNEI 979

Query: 795  GS-FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             S  A  +  G++ +   + FI  PI+  + +   K
Sbjct: 980  QSPMATVILGGLLTSTFLNGFII-PIVYLLMNKEDK 1014


>gi|118577255|ref|YP_899495.1| CzcA family heavy metal efflux protein [Pelobacter propionicus DSM
           2379]
 gi|118504760|gb|ABL01242.1| heavy metal efflux pump, CzcA family [Pelobacter propionicus DSM
           2379]
          Length = 1045

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 82/681 (12%), Positives = 183/681 (26%), Gaps = 46/681 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   +++++ ++   G+         ++ +D  P       I                 
Sbjct: 11  RNRVIILMIFGLVIAAGIWSV-----YRTPVDAIPDLSDNQVI---------VFTDYPGR 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          L +      S     + I + F D         +V   L  
Sbjct: 57  SPQVVEDQVTYPLAVNLQGLPQVRAVRASSAFGFSMIYVIFEDKADIYWARTRVLERLNY 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             S L       L    T        +       +          +R    Q+   +   
Sbjct: 117 AASLLPSGVVPTLGPDGTGVGHVFWYTIEGKGYDLEQLRTLQDWFVRY---QLNTVQGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + +   E DP++L        K+       N    G +            + 
Sbjct: 174 EVASIGGFVREYQIELDPNKLFAYNIKVGKVMEAVKASNKDVGGRLIEQADAEYLIRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V+ K ++  I +                       G   + +                 
Sbjct: 234 YVKSKDDLENIVVGADM------------------RGTPIYLKNLGTVQMGGAIRRGLMD 275

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I   +   +    I+   +    L  G  P    +V          +   
Sbjct: 276 MNGEGEAVGGIVVMRYGENAKDVIDRVKVKIKELEKGLPPGVKIMVSYDRSDLIARAVDT 335

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K      + +V +V+ + +L+ +  LV   ++ + V++    + L+G T  + S+ GI 
Sbjct: 336 LKRNLLEESVVVSVVILVFLLHFQSALVIVLTLPIAVLIAFITMKLMGVTSNIMSLGGIA 395

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVF------CSLDMGFSRAYSTIFDSNITALIATV 475
           + IG+ VD+ +++ E       +             +     +    IF S    +++ V
Sbjct: 396 IAIGVLVDAGVIMVENCYRHLSEMPPEDRKEKRLEVIITSAKQVGRAIFFSLAIIVLSFV 455

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   S++ S   AI++V  +M + +R K          + F 
Sbjct: 456 PVFMLEGQEGKLFHPLAFTKTFSMMGSAMIAITLVPVLMYYFMRGKMPPESSNPVSTFFI 515

Query: 533 LIPDC--IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
            +       +   +     + +  L     + +         +D    + + V       
Sbjct: 516 KLYSPVIRWVLVWKKTTIALNLVALAIAVPMFMQLGSEFMPPLDEGSLLYMPVTLPNVSI 575

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
               R       I     +                   V+    + ++K K      +  
Sbjct: 576 TEAKRLIQVQDTIIKSVPEVEHVLGKVGRAETSTDPAPVSMFESIIILKPKEQWRPGMKK 635

Query: 651 IQNTEIVGPKISRELIRKGIV 671
                 +  ++ +  +R G  
Sbjct: 636 ADIVAELDSRLQQIGVRNGWT 656



 Score = 67.4 bits (162), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 32/205 (15%), Positives = 74/205 (36%), Gaps = 11/205 (5%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAIT 698
            K++ E               +   ++  K  + ++I    ++I+I + F ++ AL  ++ 
Sbjct: 834  KQVLEKNLKLPPGYYVTWSGQWENQIRAKARLQLLIPLGMVIIFILLYFTFHSALEASMV 893

Query: 699  TLILDITKTLGFF--ALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT---- 752
             L +      G +  +  G   ++      + L G +V   VV+   + + +        
Sbjct: 894  MLSVPFALVGGVYLVSALGYNLSVAVWVGFIALYGIAVETGVVMVIYLHEALDKKLINGP 953

Query: 753  -TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
             T     D   +     L   + T   A + +LP+      G  V+   A PM  G++ +
Sbjct: 954  CTEQDIYDATFEGAVLRLRPKLMTVAVALLGLLPIMWSTGTGADVMKPIAAPMIGGMISS 1013

Query: 809  ASSSIFIAAPILLFIYDWRAKNARI 833
            A   + +   I + +     +   +
Sbjct: 1014 AVHVLIMTPVIFVLMKKRELRKGTL 1038



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 54/147 (36%), Gaps = 6/147 (4%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD---RMRK 746
           +  AL  + TL + +        L G+  N+ ++  +   IG  V+  V++ +   R   
Sbjct: 358 FQSALVIVLTLPIAVLIAFITMKLMGVTSNIMSLGGIAIAIGVLVDAGVIMVENCYRHLS 417

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAF 803
            M          ++I  S  +      ++     +S +P+ +  G    +    A    F
Sbjct: 418 EMPPEDRKEKRLEVIITSAKQVGRAIFFSLAIIVLSFVPVFMLEGQEGKLFHPLAFTKTF 477

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKN 830
            ++ +A  +I +   ++ +    +   
Sbjct: 478 SMMGSAMIAITLVPVLMYYFMRGKMPP 504


>gi|257091798|ref|YP_003165439.1| CzcA family heavy metal efflux pump [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044322|gb|ACV33510.1| heavy metal efflux pump, CzcA family [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1043

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/569 (12%), Positives = 159/569 (27%), Gaps = 44/569 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N +LV+L ++   IG + A+     ++ +D  P       I          +        
Sbjct: 12  NRFLVLLATLFVTIGGIYAVL----RTPIDALPDLSDVQVI---------VYTEYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          + +  +         + + + F D         +V  +L   +
Sbjct: 59  QVVEDQVTYPLSTAMLSVPRSRVVRGFSFFGASFVYIIFEDGTDIYWARSRVLEYLSFAS 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S+L      +L    T        +    D       E            +  +    + 
Sbjct: 119 SRLPRGVTPSLGPDATGVGWVYQYALLARD---KTLAELRTIQDWYVRYPLSKAHGVAEV 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                 +       DP +LR       K++      N    G +  +         +  +
Sbjct: 176 ASIGGFVQTYQVTVDPVKLRAYGIPLMKIAQVIRDSNRDVGGRVVEMAETEYMVRGKGYL 235

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             K +I                      +   + G              P        + 
Sbjct: 236 RGKSDIE-------------------RLVVKSDRGTPVLIRDIARVELAPDERRGLAELN 276

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   I   +   +    I       A +  G                   +    K
Sbjct: 277 GEGEVVSGIAMARYGQNALEVIHNVKAKIAEIGPGLPEGVTVETVYDRSELIHRAIETLK 336

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
            T    + +V +V  + +L+ +  LVA   + + +++    +  LG    L S+ GI + 
Sbjct: 337 RTLLEESFIVALVCIVFLLHVRSALVAILMLPVGILIAFIAMRSLGMNSNLMSLGGIAIA 396

Query: 424 IGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           IG  +D+ I++ E   +                ++          +F S +   ++ + +
Sbjct: 397 IGAMIDAAIVMIENAHKHLERLPAGHSPGDRAEAMLAACREVGPALFFSLLVITVSFLPV 456

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G      A T   ++  +   +I++V  +M+  IR + +             +
Sbjct: 457 FSLEGQEGRLFSPLAYTKTFAMAGAALLSITLVPVLMLLFIRGRILPEAKNPVNRFLIWV 516

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICL 563
              I    MR +   + +++L    S+  
Sbjct: 517 YRPIIAGVMRWKKLTLVLAVLAMALSLYP 545



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 6/158 (3%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S I  L+ I        AL AI  L + I          G+  NL ++  +   IG  ++
Sbjct: 343 SFIVALVCIVFLLHVRSALVAILMLPVGILIAFIAMRSLGMNSNLMSLGGIAIAIGAMID 402

Query: 736 DKVVVYDRMRKNMKLYTTSISF---RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             +V+ +   K+++      S     + +  +  E      ++ +   +S LP+    G 
Sbjct: 403 AAIVMIENAHKHLERLPAGHSPGDRAEAMLAACREVGPALFFSLLVITVSFLPVFSLEGQ 462

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               F   A    F +  AA  SI +   ++L     R
Sbjct: 463 EGRLFSPLAYTKTFAMAGAALLSITLVPVLMLLFIRGR 500


>gi|237712471|ref|ZP_04542952.1| drug efflux protein [Bacteroides sp. 9_1_42FAA]
 gi|229453792|gb|EEO59513.1| drug efflux protein [Bacteroides sp. 9_1_42FAA]
          Length = 1058

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/594 (10%), Positives = 166/594 (27%), Gaps = 49/594 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N   L     ++  + L +     +P   +   PS         GL         +  
Sbjct: 1   MSNPRNLSSFTLIVTFVCLSLIGVVLVPLLPVKLAPSRTLP-----GLT----VSFSMPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +    +   +    + + + +K       +       I+L        +    +V+  ++
Sbjct: 52  NSSRVIEAEVTSKLEAMMARVKGIRKVNSTSDNGSGSISLELDKHADIDVTRFEVSTIIR 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L        + T    + +            ++ I             +G  +  
Sbjct: 112 QTWPQLPEGVSYPQISTRRSDDKASRPFITYTLNAPANPILIQQYAEENIKPVLGQLKGI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +    ++   E D  +L  L  T   +          +   +  +    +     
Sbjct: 172 YKVELNGATPMEWQLEYDSDQLSHLGITLQAVQRAINRHYEKEFLGICSIEKGAEGR--- 228

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                        +     + + +       I                 +          
Sbjct: 229 -----------EWIRLVRTSTEKEMEFEPGVIQLQAEDGTMVTLDKLIKVRHVEERPQSY 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + +   +          L   L+    P     +             
Sbjct: 278 YRINGLNSVYLYITAEETANQLKLSGEVKHLMGELQQKMPPGYEVHISYDATEYIQKELD 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   ++L+ + +I    ++  +   S+ +N+ + + L    G  + L S+AGI
Sbjct: 338 KIYFRTGLTVLILLLFVALITWNLRYLFLIVTSLAVNISVAVILYYAFGLEMQLYSLAGI 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + + L +D+ I++ + I             L     +A+ ++  + +T + A V++FF 
Sbjct: 398 TISLNLVIDNTIVMTDHI-------------LHRRNLKAFVSVLAATLTTIGALVIIFFL 444

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----------MKSIDINP 527
                  ++ FA  + +++ +S+F A+  V +M+  I   KK            +     
Sbjct: 445 DEKIRLNLQDFAAVVIINLAVSLFVALFFVPSMIDKIGLEKKKRRKRRRFLLRPTFMKRL 504

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              F      +     R R     + +L     + +L       G   +   ++
Sbjct: 505 TVYFTRFYQGLIYYLCRFRVIACLLLLLGFGLPVFMLPEKMEGEGKWVEYYNKV 558



 Score = 68.9 bits (166), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 73/253 (28%), Gaps = 14/253 (5%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V     ++    +    +      S Q    E               ++     + K   
Sbjct: 812  VNIPFFINGRSYKLADFATVQKGQSPQKVAKENQQYRLCLQYEYIGSSEQGKKLLKKDLE 871

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRF-KWYFALGAITTL 700
                 L      E      S          +++  IA++ +   I F      L  I  +
Sbjct: 872  EFNKVLPMGYTAENDQDYWSWNKKDNKQYALLLIVIAIIFFTTAILFNSLKQPLAIIFVI 931

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS---F 757
             +        F LFG+ F+    A+ + L G +VN  + + +                  
Sbjct: 932  PISYIGVFLTFYLFGLNFDQGGFASFVLLCGITVNASIYILN----EYNAIRKRYPLLLP 987

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS---IF 814
                 K+ N  +     T ++  +  +P  V  G    +F  P+A G +     S   IF
Sbjct: 988  ARAFTKAWNSKILPIFLTVVSTILGFIPFMV--GDGKEAFWFPLAAGTIGGLVMSILGIF 1045

Query: 815  IAAPILLFIYDWR 827
            +  PI       R
Sbjct: 1046 LFLPIFSLKKQKR 1058



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 86/250 (34%), Gaps = 24/250 (9%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFD-GEKNFLVRLQYQPGDSVAQTRVL 635
           G IQL       V L  +       +     ++          +  +           V 
Sbjct: 247 GVIQLQAEDGTMVTLDKLIKVRHVEERPQSYYRINGLNSVYLYITAEETANQLKLSGEVK 306

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            ++ +   ++ P   +  +      I +EL +      +   I +L    I +   +   
Sbjct: 307 HLMGELQQKMPPGYEVHISYDATEYIQKELDKIYFRTGLTVLILLLFVALITWNLRYLFL 366

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTT 753
            +T+L ++I+  +  +  FG+E  L ++A +   +   +++ +V+ D +  R+N+K    
Sbjct: 367 IVTSLAVNISVAVILYYAFGLEMQLYSLAGITISLNLVIDNTIVMTDHILHRRNLK---- 422

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
                              +  ++    +++ +      +   +  FA  +   + V+  
Sbjct: 423 --------------AFVSVLAATLTTIGALVIIFFLDEKIRLNLQDFAAVVIINLAVSLF 468

Query: 811 SSIFIAAPIL 820
            ++F    ++
Sbjct: 469 VALFFVPSMI 478


>gi|229199560|ref|ZP_04326221.1| Swarming motility protein swrC [Bacillus cereus m1293]
 gi|228583965|gb|EEK42122.1| Swarming motility protein swrC [Bacillus cereus m1293]
          Length = 1038

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 193/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEV------TRDNIGKPL 294
             +     +  + +    ++   +  +     +  +M                    K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASGQGSQNAGAGTQPQMNPAAMNNGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENR---KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAILLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGSEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|114563553|ref|YP_751066.1| acriflavin resistance protein [Shewanella frigidimarina NCIMB 400]
 gi|114334846|gb|ABI72228.1| acriflavin resistance protein [Shewanella frigidimarina NCIMB 400]
          Length = 1021

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/684 (11%), Positives = 205/684 (29%), Gaps = 49/684 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  I   G+  +         L+ FP       +           +  +  
Sbjct: 9   KRPVTTCMFFLAIMLFGMAAS-----RMLPLEMFPGIDIPQIV---------VQVPYKGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + +           Q    I L+          + +    +  
Sbjct: 55  SPAEVERDITKVLEESLATMSGIEEVRSDSTQDGAFIQLNMKWGEDVATKSLEAREKIDS 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++ ++   +  ++ ++  + + ++ +S+A +   + +R+    +   +   
Sbjct: 115 VRHLLPKDVERVMIQQFSTADMPVLTIRISSERELSNAFDLLDKQLRK---PLERVDGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         Q+    D  +L      +  +    +  N                   + 
Sbjct: 172 KVTLYGVEQKQIEIRLDADKLVASSLNSLDLRSRLLAENFVISAGTLRENSRVYQVSPKG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                 +I+ + +       D       +    +     + + V  D   +  A +++  
Sbjct: 232 EFTSLDDINSLVIVPGIRLQDIAMVSYALPEKIEGRHLDQKYAVGIDVFKESGANLVEVS 291

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                VI Q     +      F +E                               S   
Sbjct: 292 DRVLSVIEQVKQDQQFNGIKLFIME-----------------------DQAYGVKSSLKD 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  + A L   VLF+ +   K  LV   S+ +++ +TLA +  LG +L + S+ G++
Sbjct: 329 LLLSGLMGAVLSFGVLFLFLRNLKMTLVVISSVPISLCMTLAGMYFLGYSLNILSMMGLL 388

Query: 422 LGIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIA 473
           L +G+ +D+ ++V E + +E +           +   ++  G  +    +    +T  I 
Sbjct: 389 LAVGMLIDNAVVVTESVLQEKQAGHIDDTCQIKANQQAVLTGVEKVSLAVLAGTLTTAIV 448

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
            +   F     +  F   + ++I IS+  ++ + + ++  ++ +   +    N  +R   
Sbjct: 449 FLPNIFGVKVQLTIFLEHVAVAICISLAASLLVAKTLIPLMLNHFHFEVQAANDNNRLGR 508

Query: 534 IPDCIAIQF-MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                      R +  GV    L    ++ L          +    + +        +L+
Sbjct: 509 FYQRSLTWILTRPKRSGVIAVALLISTALPLSMVQQDQGDGEGNDRLYINYQLEGRHNLA 568

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
           V  + + S++    S ++             Q   S    +    +     + +      
Sbjct: 569 VTEAMINSMETYLYSNKDKFYIDAVYSYYAPQDAQSTILLQKDIPIDIGELKKMIREGFP 628

Query: 653 NTEIVGPKISRELIRKGIVGVIIS 676
              I  P+        GI   +  
Sbjct: 629 KFSIATPQFGWGNENNGIRVTLTG 652



 Score = 74.7 bits (181), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 34/214 (15%), Positives = 79/214 (36%), Gaps = 14/214 (6%)

Query: 623  YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                   AQT++ +++           +++       +    +    I+ +      + I
Sbjct: 795  EDITTEEAQTKITQVMDSVNFPYGYGYSLRGGFERQDEDQSIMAVNMILAI----AMIYI 850

Query: 683  YIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
             +   F+        IT+++  IT       L G   ++ ++  +L L+G  VN+ +V+ 
Sbjct: 851  VMAALFESLLLPTAIITSIMFSITGVFWALWLTGTPMSVMSMIGILILMGIVVNNGIVLV 910

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIG 795
            D++ +             +I   I   L   + T     + ++P+A+       GG    
Sbjct: 911  DQINQMTPDLDKLSDT--IISVCITR-LRPVLMTVATTVLGLVPLAMGDTQIGGGGPPYS 967

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
              AI +  G+  +  +S+++       +Y  R K
Sbjct: 968  PMAIAIIGGLTFSTVTSLYLVPLCYQALYLVRHK 1001



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/282 (10%), Positives = 93/282 (32%), Gaps = 7/282 (2%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
             IS      +  +                 L ++    +    + S     +I      
Sbjct: 211 FVISAGTLRENSRVYQVSPKGEFTSLDDINSLVIVPGIRLQDIAMVSYALPEKIEGRHLD 270

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
                   + +        V+   +  + + K  +      +   E     +   L    
Sbjct: 271 QKYAVGIDVFKESGANLVEVSDRVLSVIEQVKQDQQFNGIKLFIMEDQAYGVKSSLKDLL 330

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           + G++ + ++  +           L  I+++ + +  TL      G   N+ ++  +L  
Sbjct: 331 LSGLMGAVLSFGVLFLFLRNLKMTLVVISSVPISLCMTLAGMYFLGYSLNILSMMGLLLA 390

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSIS-----FRDLIDKSINETLGRSVYTSMAAFISVL 784
           +G  +++ VVV + + +  +      +      +  +   + +     +  ++   I  L
Sbjct: 391 VGMLIDNAVVVTESVLQEKQAGHIDDTCQIKANQQAVLTGVEKVSLAVLAGTLTTAIVFL 450

Query: 785 PMAVWGGSV-IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           P  ++G  V +  F   +A  I ++ ++S+ +A  ++  + +
Sbjct: 451 P-NIFGVKVQLTIFLEHVAVAICISLAASLLVAKTLIPLMLN 491


>gi|206560497|ref|YP_002231261.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
 gi|198036538|emb|CAR52435.1| RND family efflux system transporter protein [Burkholderia
           cenocepacia J2315]
          Length = 1072

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/515 (13%), Positives = 149/515 (28%), Gaps = 36/515 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I   G L AL     ++  D FP       IS+  +  G       +  
Sbjct: 11  RPYTFIVLALLILIAGPLAAL-----RTPTDIFPDIRIP-VISVVWNYAG-------LQP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D     +  Y   L + +           +    + + F  S        +VT   Q V
Sbjct: 58  ADMSGRIVTYYERTLGTTVNDVAHIESQSFRSFGIVKIFFQPSVDIRTATAQVTSISQTV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++      + ++      D +     +           Q+        
Sbjct: 118 LKQMPPGTTPPQILNYNASTVPVLQLALTSDTLNEQ--QLGDYATNVIRPQLLSVAGVAI 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + Q+  + DP  L+    +   ++      N         +            
Sbjct: 176 PSPYGGKVRQVQIDLDPQALQAKGLSAQDVATALAQQNQIIPAGTQKI------------ 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                   G        N  P T   +  +    +     F     ++        +   
Sbjct: 224 --------GGFEYNIRLNNSPLTIDQLNALPIRTVNGAVIFMRDVAHVRDGFPPQGNIVR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                S    I         + A   P    +V         G+ S  
Sbjct: 276 VDGRRAVLMSVLKSGSASTLDIIAGVKAQLPRIEATLPPSLRLVVMGDQSVFVKGAVSGV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A L   ++ + +   +  L+   SI L V+  +A L+  G TL + ++ G+ L
Sbjct: 336 AREGLIAAALTSAMILLFLGSWRSTLIIAASIPLAVLAAIAALAAAGETLNVMTLGGLAL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E +     + + V  ++  G S+  +  F S +   I  V +    G
Sbjct: 396 AVGILVDDATVTIENVNWHLEQGKDVRSAILDGASQIVAPAFVSLLCICIVFVPMLLLDG 455

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
              R   + M  +++ +M  +  + R  +  +  Y
Sbjct: 456 V-ARFLFVPMAEAVIFAMIASFVLSRTFVPMMAHY 489



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 72/192 (37%), Gaps = 7/192 (3%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              L  ++  +   + L  + +  +        + R+G++   +++  +L+++     W 
Sbjct: 302 KAQLPRIEATLPPSLRLVVMGDQSVFVKGAVSGVAREGLIAAALTSAMILLFLG---SWR 358

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L    ++ L +   +   A  G   N+  +  +   +G  V+D  V  + +       
Sbjct: 359 STLIIAASIPLAVLAAIAALAAAGETLNVMTLGGLALAVGILVDDATVTIENVN---WHL 415

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
                 R  I    ++ +  +  + +   I  +PM +  G     F +PMA  ++ A  +
Sbjct: 416 EQGKDVRSAILDGASQIVAPAFVSLLCICIVFVPMLLLDGVARFLF-VPMAEAVIFAMIA 474

Query: 812 SIFIAAPILLFI 823
           S  ++   +  +
Sbjct: 475 SFVLSRTFVPMM 486



 Score = 45.1 bits (104), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 59/153 (38%), Gaps = 7/153 (4%)

Query: 680  MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + I + F  W  A   ++ L   +   +    +     ++ A+   +  +G +  + +
Sbjct: 906  IYLLIVVNFHSWRDAFVIVSGLPAALAGIVWMLFVTRTPLSVPALTGAILCMGVATANSI 965

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            +V    R+  +L  T+ +    ++          + T++A  I + PMA+    GG    
Sbjct: 966  LVVTFARE--RLAHTADAAVAALEAGFTR-FRPVMMTALAMIIGMAPMALGLGDGGEQNA 1022

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +  G++ A ++++     +   ++    
Sbjct: 1023 PLGRAVIGGLLCATAATLVFVPVVFSLVHRRDR 1055


>gi|172061011|ref|YP_001808663.1| acriflavin resistance protein [Burkholderia ambifaria MC40-6]
 gi|171993528|gb|ACB64447.1| acriflavin resistance protein [Burkholderia ambifaria MC40-6]
          Length = 1072

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 83/592 (14%), Positives = 167/592 (28%), Gaps = 39/592 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I   G L AL     ++  D FP       IS+  +  G       +  
Sbjct: 11  RPYTFIVLALLILIAGPLAAL-----RTPTDIFPDIRIP-VISVVWNYAG-------LQP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D     +  Y   L + +           +    + + F  S        +VT   Q V
Sbjct: 58  ADMAGRIVTYYERTLGTTVNDVAHIESQSFRSFGIVKIFFQPSVDIRTATAQVTSISQTV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++      + ++      D +     +           Q+        
Sbjct: 118 LKQMPPGTTPPQILNYNASTVPVLQLALTSDTLNEQ--QLGDYATNVIRPQLLSVAGVAI 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + Q+  + DP  L+    +   ++      N         +     +      
Sbjct: 176 PSPYGGKVRQVQIDLDPQALQAKGLSAQDVATALAQQNQIIPAGTQKIGRFEYNIRLNDS 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +++                     +    +     F     ++        +   
Sbjct: 236 PLTIDQLNA--------------------LPIRTVNGAVIFMRDVAHVRDGFPPQGNIVR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                S    I         + A   P    +V         G+ S  
Sbjct: 276 VDGRRAVLMSILKSGSASTLDIIADVKAQLPRIEATLPPSLRLVVMGDQSVFVKGAVSGV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A L   ++ + +   +  L+   SI L V+  +A L+  G TL + ++ G+ L
Sbjct: 336 AREGLIAAALTSAMILLFLGSWRSTLIIAASIPLAVLAAIAALAAAGETLNVMTLGGLAL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E +     + + V  ++  G S+  +  F S +   I  V +    G
Sbjct: 396 AVGILVDDATVTIENVNWHLEQGKDVRSAILDGASQIVAPAFVSLLCICIVFVPMLLLDG 455

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
              R   + M  +++ +M  +  + R  +  + RY               L P       
Sbjct: 456 V-ARFLFVPMAEAVIFAMIASFVLSRTFVPMMARYLLRPH---AAHPAAVLAPHGAPFPT 511

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            R+R   V     F      L   +    G+      +  VL    V LS V
Sbjct: 512 PRSRNPLVAFQQGFERRFAALRTGYRAVLGLALAHRARFVVLFLTAVALSFV 563



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/202 (13%), Positives = 74/202 (36%), Gaps = 7/202 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                 L  ++  +   + L  + +  +        + R+G++   +++  +L+++    
Sbjct: 299 ADVKAQLPRIEATLPPSLRLVVMGDQSVFVKGAVSGVAREGLIAAALTSAMILLFLG--- 355

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L    ++ L +   +   A  G   N+  +  +   +G  V+D  V  + +    
Sbjct: 356 SWRSTLIIAASIPLAVLAAIAALAAAGETLNVMTLGGLALAVGILVDDATVTIENVN--- 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                    R  I    ++ +  +  + +   I  +PM +  G     F +PMA  ++ A
Sbjct: 413 WHLEQGKDVRSAILDGASQIVAPAFVSLLCICIVFVPMLLLDGVARFLF-VPMAEAVIFA 471

Query: 809 ASSSIFIAAPILLFIYDWRAKN 830
             +S  ++   +  +  +  + 
Sbjct: 472 MIASFVLSRTFVPMMARYLLRP 493



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 55/153 (35%), Gaps = 7/153 (4%)

Query: 680  MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + I + F  W  A   ++ L   +   +    +     ++ A+   +  +G +  + +
Sbjct: 906  IYLLIVVNFHSWRDAFVIVSALPAALAGIVWMLFVTRTPLSVPALTGAILCMGVATANSI 965

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            +V    R+ +     +        ++        + T++A  I + PMA+    GG    
Sbjct: 966  LVVTFARERLA---HTADATVAALEAGFTRFRPVMMTALAMIIGMAPMALGLGDGGEQNA 1022

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +  G++ A  +++     +   ++    
Sbjct: 1023 PLGRAVIGGLLCATVATLVFVPVVFSLVHRGDR 1055


>gi|260578589|ref|ZP_05846499.1| drug exporter of the RND family protein [Corynebacterium jeikeium
           ATCC 43734]
 gi|258603304|gb|EEW16571.1| drug exporter of the RND family protein [Corynebacterium jeikeium
           ATCC 43734]
          Length = 777

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/687 (11%), Positives = 180/687 (26%), Gaps = 46/687 (6%)

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
           +     ++R    +P     + L   +    K++                     + +  
Sbjct: 3   SSWGDVAYRFRRLIPLVIIAAILVLYVVAGLKLADRMSQEGWDDPNSQSTKAAQIEQEVF 62

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                  V +        +A  D         I                   +  A + +
Sbjct: 63  GRDANGDVILMVTGDKPGSATSDEVKQSITQQIEQLRKDHPDEIGGVTSYFNRGPAAMAN 122

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                A             +     IE      +             V +       G  
Sbjct: 123 PDGTAAFASIGLQGIEDDVLINFRKIEDDLRAISAPGVDVKIAGATAVSDSLDEGMAGDI 182

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
              +       GL+L+++F  ++     L+      L  +  LA+L+             
Sbjct: 183 HRAEIYALPAVGLLLLIVFGGLIAAFMPLLVGGLSILGSMGVLAILASFTQINVFAQSVV 242

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +LG+GLA+D  + +  R REE  +      ++    + A  T+  S     +A   LF 
Sbjct: 243 TLLGLGLAIDYGLFMVSRFREEMAEGHDTRTAVRNTTATAGKTVVFSAAMVAVALSGLFI 302

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI------IRYKKMKSIDINPLSRFFL 533
           F    ++  A     ++ ++   +++++ ++   +        +KK ++   +       
Sbjct: 303 FPQAFLKSVAFGAISAVGLAALLSVAVLPSIFAMLGPNIDKWSFKKKRTRRRSEQVEGIW 362

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV---- 589
                        F  V +  +  +         G           Q  V          
Sbjct: 363 GRIPAFAMRHSKLFTVVIVGGMLLMAVPIAGIKLGGMNETYLPPSNQTRVNQEEFTEKFP 422

Query: 590 ----------------DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                            ++ V     ++      FQ     K+ +  L     D     R
Sbjct: 423 QFRTDPIKLVIEGDSKTVAAVYKEANAIPGLTAPFQVSRPTKDDVTVLSTGIADRDDNDR 482

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYF 692
           ++  ++    +      +  T  +  +    L  K    ++   +   + + + F     
Sbjct: 483 IVNTLEDINVD-GANVYVAGTPALEVESIDALFEKLPWMLLYIVLVSFVLMAMIFGSLII 541

Query: 693 ALGAITTLILDITKTLGFFALFGI-------------EFNLTAVAAVLTL-IGYSVNDKV 738
              A+   IL    TLG   L  +                   +  ++ +  G S + +V
Sbjct: 542 PAKAVIMNILGTGATLGLLTLIFVDGHGADMFNFTAGPLTSPVLVLIIAIVFGLSTDYEV 601

Query: 739 VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
            +  RM +         S    I      T       ++   +           ++   A
Sbjct: 602 FLVSRMVE---ARARGASTDQAIRFGTATTGSIITAAALIMIVVCGAFGFSSIVMMKYIA 658

Query: 799 IPMAFGIVVA-ASSSIFIAAPILLFIY 824
             M   +++      + +   ++  + 
Sbjct: 659 FGMVIALLLDATIIRMLLVPSVMHLLG 685


>gi|229492478|ref|ZP_04386281.1| mmpl domain protein [Rhodococcus erythropolis SK121]
 gi|229320464|gb|EEN86282.1| mmpl domain protein [Rhodococcus erythropolis SK121]
          Length = 784

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 79/650 (12%), Positives = 189/650 (29%), Gaps = 69/650 (10%)

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    +++             +  K +V+           F+      G      +D 
Sbjct: 101 ASIRGIDKVADSAKVDPATATPEQAAKALVNPVTGNDSMVAMFKEKAAAAGTSETQAVDD 160

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
               +P+                  +    L   + + +   +   +  +  G+      
Sbjct: 161 ARALSPLSADGTVGYVEVPFSGDFADLDQALRDSINSAADVGRAEGLNVQVSGSAAQEAE 220

Query: 361 IYKGTCAIV-AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA- 418
           +  G   ++   +  +VL +         +   +  + + +    +++    + L S+  
Sbjct: 221 MPGGVTELIGIAVAAVVLAITFGSLVAAGLPLLTAIIGIAIGSLGITVATGFMDLSSMTP 280

Query: 419 --GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              I++G+ +A+D ++ +  R R E     +   +       A S +  + +T +IA V 
Sbjct: 281 TLAIMIGLAVAIDYSLFIMSRFRHELTLTDNRAEAAGRAVGTAGSAVVFAGLTVIIALVA 340

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           L   G   +         ++LI++  A++++ A++    R      I            +
Sbjct: 341 LRVVGIPFLSDMGAAAAFTVLIAVLIALTLLPAILGMFGRKAFAGKIPFLSKRAEESEDE 400

Query: 537 CIAIQFMRARFWGVGISILFSICSICL--------------------------------L 564
                 +  RF    +          +                                 
Sbjct: 401 DSGKPKLALRFISAVVRRPLVPLIGGVVLLGALALPATGLSLALPSEATGDPATSARQAY 460

Query: 565 FTHGLNYGIDFKGGIQLGVLANR--------PVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 +G    G +   V A            ++    S  + +Q   +   N  G+  
Sbjct: 461 DLIDEGFGDGRNGPLIAVVDAKGASVPAGEAFAEVVSTISGFDDVQNAQVVGVNEAGDTA 520

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKI----TEIVPLSTIQNTEIVGPKISRELIRKGI-- 670
            ++          A   ++  ++         I     I     +   +S  L    +  
Sbjct: 521 QVLITPKSGPTDPATMDLVSSLRGAEGGLNDSIGVSYGITGQTALEGDVSDTLKDALVPY 580

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF------FALFGIE------F 718
           + V++    +L+ +  R      L A    +L +  T G           GI        
Sbjct: 581 LAVVVGLAFILLLLVFR-SILVPLTATLGFLLSVLATFGATVAIFQHGWLGIISNPQPLV 639

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           +   +  +  + G +++ +V +  RMR+    Y    S ++ +    N    R V  +  
Sbjct: 640 SFMPIFLIGVVFGLAMDYQVFLVTRMREE---YVHGASAKEAVTIGFNH-GARVVSAAAV 695

Query: 779 AFISVLPMAVW-GGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDW 826
             ISV    +    S I S    +A  +   A    + I   ++  + D 
Sbjct: 696 IMISVFGAFIAEPNSFIKSIGFALAAAVFFDAFIVRMVIIPSVMALLGDK 745


>gi|110804559|ref|YP_688079.1| putative inner membrane component for iron transport [Shigella
           flexneri 5 str. 8401]
 gi|110614107|gb|ABF02774.1| putative inner membrane component for iron transport [Shigella
           flexneri 5 str. 8401]
          Length = 1059

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/695 (9%), Positives = 172/695 (24%), Gaps = 57/695 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMPFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---------------FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
            ++ + +F                  G      A T   ++  +   AI ++  +M + I
Sbjct: 458 TLSFIPIFTLEGQEGQEGQEGQEGQEGRLFGPLAFTKTYAMAGAALLAIVVIPILMGYWI 517

Query: 516 RYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDF 575
           R K               +   + ++ +      + ++ L  +  +  L   G  +    
Sbjct: 518 RGKIPPESSNPLNRFLIRVYHPLLLKVLHWPKTTLLVAALSVLTVLWPLNKVGGEFLPQI 577

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
             G  L + +  P   +        LQ  D    +         +       + +    +
Sbjct: 578 NEGDLLYMPSTLPGISAA--EAASMLQKTDKLIMSVPEVARVFGKTGKAETATDSAPLEM 635

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                ++            + +  ++   +   G+
Sbjct: 636 VETTIQLKPQDQWRPGMTMDKIIEELDNTVRLPGL 670



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 95/288 (32%), Gaps = 16/288 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +     + + L+ V     S     +  +N     
Sbjct: 775  IARYPINLRYPQSWRDSPQALRQLPILTPMKQQITLADVADVKVSTGPSMLKTENARPTS 834

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + + +L  K +V + +
Sbjct: 835  WIYIDARDRDMVSVVHDLQKAIAEKVQLKPGTSVAFSGQFELLERANHKL--KLMVPMTL 892

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  I+++   +   +      G   ++      + L G +  
Sbjct: 893  MIIFVLLYLAFR-RVGEALLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAE 951

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++   +             + +       +     T       +LP+ 
Sbjct: 952  FGVVMLMYLRHAIEAEPSLNNPQTFSEQKLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 1011

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI--LLFIYDWRAKN 830
                 G  V+   A PM  G++ A   S+FI      L++++  R +N
Sbjct: 1012 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRVRN 1059


>gi|184159730|ref|YP_001848069.1| putative silver efflux pump [Acinetobacter baumannii ACICU]
 gi|183211324|gb|ACC58722.1| putative silver efflux pump [Acinetobacter baumannii ACICU]
 gi|322509643|gb|ADX05097.1| czcA [Acinetobacter baumannii 1656-2]
          Length = 1052

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/616 (9%), Positives = 160/616 (25%), Gaps = 60/616 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  W+++       +G+         +  +D  P                   +  + +
Sbjct: 24  QNAIWVMLFVLAWIGVGIWS-----YQKLPIDAVPDITNTQ-----------VQINTQAN 67

Query: 62  EDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +   + +          R   +++T+ F D          +   L
Sbjct: 68  GYTALEVEQRITYPIENAMAGIPNLEQTRSISRYGLSQVTIIFKDGTDIYWARQLINQRL 127

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQ 173
           Q  + +L       +   +T                         A++           Q
Sbjct: 128 QEADGQLPESVDPIMSPVSTGLGEIYQWVVKAKTGAKKADGTAYTAMDLREIQDWIVRPQ 187

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   +               D  RL+QL  +  +        N ++          
Sbjct: 188 LQRVKGVAEINSIGGYNKTYIVSPDLKRLQQLQISINEFQTALQENNENRGAGFIEENGE 247

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           + +     ++    +I                     +I+               N+   
Sbjct: 248 QLTVRVPGMLSSVEDIQ--------------------NITVSTKNGLPIRVADVANVSIG 287

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +               I       +     +        +++                
Sbjct: 288 HDLRTGAATYNGEETVLGIAMMMMGENSRTVAQAVDAKIKEIQSTLPKGVEIETVYDRTS 347

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +  +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  
Sbjct: 348 LVNKAIATVQKNLVEGAILVIVILFIFLGNFRAALITACVIPLSMLFTLTGMAEQNISAN 407

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTI 463
           L S+  +  GI   VD  +++ E       + Q            F  + +   +A   +
Sbjct: 408 LMSLGALDFGII--VDGAVVIVENCIRRLAEAQHALHRPLTRAERFKEVFLAAKQARRPL 465

Query: 464 FDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               +  L+  + +F   G         A+T+ +++L +M  +++ V A +   +  +  
Sbjct: 466 IFGQMIILVVYLPIFALSGVEAKMFHPMAMTVVMALLGAMILSVTFVPAAVALFVTGEVK 525

Query: 521 KSIDINPLSRFFLIPDCI-AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           +              D +     ++       +SIL     +           +      
Sbjct: 526 EKETRWMQLLKQKYRDILDQAYQLKIVVVSFALSILVLTGVLATQMGSEFAPQLSEGDFA 585

Query: 580 QLGVLANRPVDLSVVR 595
              + +        +R
Sbjct: 586 LQQMRSPSTGLEQSLR 601



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 76/251 (30%), Gaps = 35/251 (13%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  ++      Q         V +          + V E+      E +P        
Sbjct: 815  QDVAKVERTSGLNQVGRENGKRRVIITANVEGRDLGSFVQELRTTLAKEQLPAGYWLEYG 874

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                 ++    R   + V ++   + I +               +  ++ ++L  F+   
Sbjct: 875  GQFENLASAAAR-MKIVVPLALAMIFILLM-------------AVFHNVKESLLVFSGVP 920

Query: 716  IEFNLTAVA--------------AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               +   +A                + L G +V + +V+   +++           +   
Sbjct: 921  FALSGGLIALWLRDIPLSMSAGVGFIALSGVAVLNGLVMLSFIKE----LREKFDIQTAT 976

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   L   + T+  A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 977  WNGAILRLRPVLMTACVASLGFIPMALATGTGAEVQRPLATVVIGGIISSTILTLVLLPV 1036

Query: 819  ILLFIYDWRAK 829
            I  ++ + + K
Sbjct: 1037 IYRWMNEGKTK 1047


>gi|169794463|ref|YP_001712256.1| RND divalent metal cation efflux transporter [Acinetobacter
           baumannii AYE]
 gi|213158965|ref|YP_002320963.1| cation efflux system protein [Acinetobacter baumannii AB0057]
 gi|215482053|ref|YP_002324235.1| Cation efflux system protein czcA [Acinetobacter baumannii
           AB307-0294]
 gi|301344581|ref|ZP_07225322.1| Cation efflux system protein czcA [Acinetobacter baumannii AB056]
 gi|301510520|ref|ZP_07235757.1| Cation efflux system protein czcA [Acinetobacter baumannii AB058]
 gi|301595981|ref|ZP_07240989.1| Cation efflux system protein czcA [Acinetobacter baumannii AB059]
 gi|332850229|ref|ZP_08432592.1| cation efflux system protein CzcA [Acinetobacter baumannii 6013150]
 gi|332868804|ref|ZP_08438409.1| cation efflux system protein CzcA [Acinetobacter baumannii 6013113]
 gi|169147390|emb|CAM85251.1| RND divalent metal cation efflux transporter [Acinetobacter
           baumannii AYE]
 gi|213058125|gb|ACJ43027.1| cation efflux system protein [Acinetobacter baumannii AB0057]
 gi|213988803|gb|ACJ59102.1| Cation efflux system protein czcA [Acinetobacter baumannii
           AB307-0294]
 gi|332730873|gb|EGJ62181.1| cation efflux system protein CzcA [Acinetobacter baumannii 6013150]
 gi|332733118|gb|EGJ64316.1| cation efflux system protein CzcA [Acinetobacter baumannii 6013113]
          Length = 1052

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 60/616 (9%), Positives = 161/616 (26%), Gaps = 60/616 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  W+++       +G+         +  +D  P                   +  + +
Sbjct: 24  QNAIWVMLFVLAWIGVGIWS-----YQKLPIDAVPDITNTQ-----------VQINTQAN 67

Query: 62  EDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +   + +          R   +++T+ F D          +   L
Sbjct: 68  GYTALEVEQRITYPIENAMAGIPNLEQTRSISRYGLSQVTIIFKDGTDIYWARQLINQRL 127

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRIDQ 173
           Q  + +L       +   +T                   D     A++           Q
Sbjct: 128 QEADGQLPESVDPIMSPVSTGLGEIYQWVVKAKSGAKKADGTAYTAMDLREIQDWIVRPQ 187

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   +               D  RL+QL  +  +        N ++          
Sbjct: 188 LQRVKGVAEINSIGGYNKTYIVSPDLKRLQQLQISINEFQTALQENNENRGAGFIEENGE 247

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           + +     ++    +I                     +I+               N+   
Sbjct: 248 QLTVRVPGMLSSVEDIQ--------------------NITVSTKNGLPIRVADVANVSIG 287

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +               I       +     +        +++                
Sbjct: 288 HDLRTGAATYNGEETVLGIAMMMMGENSRTVAQAVDTKIKEIQSTLPKGVEIETVYDRTS 347

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +  +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  
Sbjct: 348 LVNKAIATVQKNLVEGAILVIVILFIFLGNFRAALITACVIPLSMLFTLTGMAEQNISAN 407

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTI 463
           L S+  +  GI   VD  +++ E       + Q            F  + +   +A   +
Sbjct: 408 LMSLGALDFGII--VDGAVVIVENCIRRLAEAQHALHRPLTRSERFKEVFLAAKQARRPL 465

Query: 464 FDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               +  L+  + +F   G         A+T+ +++L +M  +++ V A +   +  +  
Sbjct: 466 IFGQMIILVVYLPIFALSGVEAKMFHPMAMTVVMALLGAMILSVTFVPAAVALFVTGEVK 525

Query: 521 KSIDINPLSRFFLIPDCI-AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           +              + +     ++       +SIL     +           +      
Sbjct: 526 EKETRWMQLLKQKYQNILDQAYQLKIVVVSFALSILVLTGVLATQMGSEFAPQLSEGDFA 585

Query: 580 QLGVLANRPVDLSVVR 595
              + +        +R
Sbjct: 586 LQQMRSPSTGLEQSLR 601



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 76/251 (30%), Gaps = 35/251 (13%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  ++      Q         V +          + V E+      E +P        
Sbjct: 815  QDVAKVERTSGLNQVGRENGKRRVIITANVEGRDLGSFVQELRATLAKEQLPAGYWLEYG 874

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                 ++    R   + V ++   + I +               +  ++ ++L  F+   
Sbjct: 875  GQFENLASAAAR-MKIVVPLALAMIFILLM-------------AVFHNVKESLLVFSGVP 920

Query: 716  IEFNLTAVA--------------AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               +   +A                + L G +V + +V+   +++           +   
Sbjct: 921  FALSGGLIALWLRDIPLSMSAGVGFIALSGVAVLNGLVMLSFIKE----LREKFDIQTAT 976

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   L   + T+  A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 977  WNGAILRLRPVLMTACVASLGFIPMALATGTGAEVQRPLATVVIGGIISSTILTLVLLPV 1036

Query: 819  ILLFIYDWRAK 829
            I  ++ + + K
Sbjct: 1037 IYRWMNEDKTK 1047


>gi|264680288|ref|YP_003280198.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni
           CNB-2]
 gi|262210804|gb|ACY34902.1| cobalt-zinc-cadmium resistance protein,CzcA [Comamonas testosteroni
           CNB-2]
          Length = 1032

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/581 (12%), Positives = 160/581 (27%), Gaps = 46/581 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD--EDDFVNGFLQMYSDELRSFLKKE 84
                +D FP   P               ++L+V     + V   +    ++    L  +
Sbjct: 31  YVHLPIDAFPDISPTQ-----------VKVILKVAGMTPEEVEQRVSTPVEQELLGLPHK 79

Query: 85  GIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEIS 144
            I     +   + +T+ F++         +V+  L G+   L    +  L   TT     
Sbjct: 80  TIVRSVSKYGISDVTVDFSEGTDVYWARQQVSERLAGIQRDLPATAEGGLAPITTPLGEM 139

Query: 145 IVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQ 204
            + +   +D       E+   +       +              ++       DP+RLR 
Sbjct: 140 FMFT---VDGESYSLAERRRVLDWVIRPALRTVAGVADVNALGGVVRGYEVIPDPARLRA 196

Query: 205 LLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPK 264
              T  ++       N +                 +  V    ++               
Sbjct: 197 RGVTLDQLRQALDANNRNDGAGRLDRGEEHWVVRVEGGVRGLDDL--------------- 241

Query: 265 THKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFT 324
             + VV +      A                              Q +  G   +     
Sbjct: 242 --RAVVIVPAKNGQAAATVGDVATVRLGEATRNGAVSRDGQGEAVQGLVLGLRGVDARSL 299

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L           V          +           + LV+++L++ +   
Sbjct: 300 VDAVQARLDELEPRLPKGMSIQVFYNRGELVSRAAGTVVRALVEASVLVVVILYLFLGGV 359

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK 444
           +  LV   ++ L+++ T  L+  +G T  L S+ G+ + +G+ VD++++V E I      
Sbjct: 360 RAALVVAATLPLSMLATFLLMRYVGLTANLMSLGGLAIALGMLVDASVVVVENIETALAH 419

Query: 445 NQSVFCS---------LDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITM 492
            Q    S         +    S   + +        I  + L       G      A+T+
Sbjct: 420 KQEDVSSANSVDRFSLIRDAVSAVSAPMLAGVSIIAIVFLPLLTLQGLEGKLFAPVALTI 479

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
            L++  S+  A ++V A+   +                        A      R      
Sbjct: 480 VLALSASVLIAFTVVPALASLL-LRSHASDAPWLMRKLSGGFAWLQAWSLAHRRTVFGIA 538

Query: 553 SILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
               +  ++  L           +G + + +  +  + L+ 
Sbjct: 539 LATLAGAAVLYLSVGKTFMPTMDEGDLIVQLQKSPSISLTA 579



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 83/233 (35%), Gaps = 8/233 (3%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L          ++  GE    + L  +  D+ +    ++    ++   +P          
Sbjct: 266 LGEATRNGAVSRDGQGEAVQGLVLGLRGVDARSLVDAVQARLDELEPRLPKGMSIQVFYN 325

Query: 658 GPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
             ++        +  ++  S + ++I          AL    TL L +  T       G+
Sbjct: 326 RGELVSRAAGTVVRALVEASVLVVVILYLFLGGVRAALVVAATLPLSMLATFLLMRYVGL 385

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRM------RKNMKLYTTSISFRDLIDKSINETLG 770
             NL ++  +   +G  V+  VVV + +      ++       S+    LI  +++    
Sbjct: 386 TANLMSLGGLAIALGMLVDASVVVVENIETALAHKQEDVSSANSVDRFSLIRDAVSAVSA 445

Query: 771 RSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             +       I  LP+    G     FA P+A  IV+A S+S+ IA  ++  +
Sbjct: 446 PMLAGVSIIAIVFLPLLTLQGLEGKLFA-PVALTIVLALSASVLIAFTVVPAL 497



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 76/218 (34%), Gaps = 8/218 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++L +L   D   +    +      +Q         + V E       +           
Sbjct: 794  TSLATLSPQDGPVRIDHEDGARFAVVQVNVEGRDLASFVSEARASVTADPALKDLRIVWG 853

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                   R   R  +V V ++  A+ + + + F+    AL  I  +   +   +    + 
Sbjct: 854  GQFENQQRAAARLALV-VPVALSAIFVLLVLTFRSMRQALLVIANIPFALVGGMAALRIS 912

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   ++ A    + L+G +V + VV+         L  + +     + + + + L   + 
Sbjct: 913  GEYLSVPASVGFIALLGIAVLNGVVLVSHFN---ALLVSGMELTQAVRQGVRDRLRPVLM 969

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
            T+    + ++P+ +    G  +    A+ +A G++ + 
Sbjct: 970  TACITALGMVPLLLATGPGSEIQRPLAVVVAGGLISST 1007


>gi|146283470|ref|YP_001173623.1| multidrug efflux protein [Pseudomonas stutzeri A1501]
 gi|145571675|gb|ABP80781.1| probable RND efflux transporter [Pseudomonas stutzeri A1501]
          Length = 939

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/439 (14%), Positives = 141/439 (32%), Gaps = 25/439 (5%)

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                +Q  + I++        + +  ++      V ++L  D +  +L        +++
Sbjct: 1   MTSVSQQNASVISVYARIGADTDRLYTELLSQANSVKNQLPQDAEDPVLNKQAADSTALM 60

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                 DQ+ +   + +  + R    ++       +       +  +    DP +L    
Sbjct: 61  YISFYSDQLSN--PQITDYLSRVIQPKLATLPGMAEAEILGNQVFAMRLWLDPVKLAAYG 118

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            +   ++      N          +++  S      ++                      
Sbjct: 119 VSAGDVNEAVRKYNFLSAAGEVKGQYVVTSINADTELKTP-------------------- 158

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
           +    I     G  R        +                        G    +    I+
Sbjct: 159 EAFAAIPLKTQGDSRVLLGDVARVEMGAESYNSISSFDGIPSVYIGIKGTPSANPLDVIK 218

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
               +   + A   P     +          S      T A  A +V++V+F+ +   + 
Sbjct: 219 EVRAIMPQIEAQLPPGLKATIAYDATEFIQASIDEVVKTLAEAAVIVIVVVFLFLGSLRT 278

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ 446
            L+   +I L++I  L  +  +G ++ L ++  +VL IGL VD  I+V E I     + +
Sbjct: 279 VLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEQGK 338

Query: 447 SVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTA 503
           S F +   G       +    IT       + F     G   + FA+T+  ++LIS   A
Sbjct: 339 SPFQAALDGAREIAMPVVSMTITLAAVYAPIGFLQGLTGALFQEFALTLAGAVLISGVVA 398

Query: 504 ISIVRAMMIFIIRYKKMKS 522
           +++   M   ++R+++  S
Sbjct: 399 LTLSPMMCSKLLRHEENPS 417



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 61/156 (39%), Gaps = 6/156 (3%)

Query: 674 IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            ++   + + +  +F+ +   L  + T+ L +   L    L     N+     ++TLIG 
Sbjct: 772 ALALAVIFLVLAAQFESFRDPLVILVTVPLSVCGALVPLFLGLSSMNIYTQVGLVTLIGL 831

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
                +++ +    N       +S R+ ++++    L   + T+ A    ++P+ +    
Sbjct: 832 ISKHGIMIVE--FANQLRRERGLSRREAVEEAAAIRLRPVLMTTAATVFGMVPLIIASGA 889

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
           G        + +A G+ V    ++F+   +   +  
Sbjct: 890 GAVSRFDIGLVIATGMSVGTLFTLFVLPAVYELLAR 925



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 6/146 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L  + T+ L +   L F    G   NL  + A++  IG  V+D +VV + +    
Sbjct: 275 SLRTVLIPVVTIPLSMIGVLFFMQAMGYSINLLTLLAMVLAIGLVVDDAIVVVENIH--- 331

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGI 805
           +      S          E     V  ++       P+       G++   FA+ +A  +
Sbjct: 332 RHIEQGKSPFQAALDGAREIAMPVVSMTITLAAVYAPIGFLQGLTGALFQEFALTLAGAV 391

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNA 831
           +++   ++ ++  +   +       +
Sbjct: 392 LISGVVALTLSPMMCSKLLRHEENPS 417


>gi|297584750|ref|YP_003700530.1| protein-export membrane protein SecD [Bacillus selenitireducens
           MLS10]
 gi|297143207|gb|ADH99964.1| protein-export membrane protein SecD [Bacillus selenitireducens
           MLS10]
          Length = 438

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 107/368 (29%), Positives = 185/368 (50%), Gaps = 6/368 (1%)

Query: 151 NIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTA 210
              ++    +  ++  +  R+D +G+SE +I   G  RI +QL G +D S  R+LL T A
Sbjct: 58  EETEITRGLLTDTVSALNARVDVLGVSEPSITIEGEDRIRVQLAGIEDQSSARELLSTEA 117

Query: 211 KMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVV 270
           ++SF         +  M G   +       +  E    I  + +     +        + 
Sbjct: 118 RLSFRDTEN----ELLMDGGDLVEGGAQQTFDPETNRPI--VQVTVDDPSMFGDITSEIS 171

Query: 271 DISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGI 330
                +     + +    +         D ++++AP + Q +      I+G+FT+++A  
Sbjct: 172 QRQPPDNIMAIWMDYEEGDDYWEEMQKEDSKIVSAPRVQQRLNQSTVVITGDFTVDSAQD 231

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
           LA +L AG+LP+ L  V   +VGA LG  ++     A   G+ LI  +M++ Y   G++A
Sbjct: 232 LAGILNAGALPVSLEEVYSNSVGASLGERAMDLAIFAGYIGVALIFGYMLLYYRFMGIIA 291

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFC 450
             ++ L   + L +   + A LTLP IA ++LG+G+AVD+NI+  ERI++E R  +SV  
Sbjct: 292 VLTLSLYTYVVLVIFDWMNAVLTLPGIAALILGVGMAVDANIITFERIKDELRSGKSVMS 351

Query: 451 SLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +   G  R+ STI D+N+T ++A VVLF+FG  AV+GFA+ + +SIL S  TA+   R  
Sbjct: 352 AFKAGSRRSLSTIIDANVTTILAAVVLFYFGTSAVQGFALMLIVSILTSFLTAVLGARLF 411

Query: 511 MIFIIRYK 518
           +   +  +
Sbjct: 412 LGLWVNSR 419



 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 89/259 (34%), Gaps = 9/259 (3%)

Query: 574 DFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTR 633
                + + +      D        +S  +     Q    +   ++   +    +     
Sbjct: 175 PPDNIMAIWMDYEEGDDYWEEMQKEDSKIVSAPRVQQRLNQSTVVITGDFTVDSAQDLAG 234

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           +L         +        +  VG  +    +   I    I    +  Y+ + +++   
Sbjct: 235 ILNA-----GALPVSLEEVYSNSVGASLGERAMDLAIFAGYIGVALIFGYMLLYYRF-MG 288

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           + A+ TL L     L  F        L  +AA++  +G +V+  ++ ++R++  ++   +
Sbjct: 289 IIAVLTLSLYTYVVLVIFDWMNAVLTLPGIAALILGVGMAVDANIITFERIKDELR---S 345

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
             S           +L   +  ++   ++ + +  +G S +  FA+ +   I+ +  +++
Sbjct: 346 GKSVMSAFKAGSRRSLSTIIDANVTTILAAVVLFYFGTSAVQGFALMLIVSILTSFLTAV 405

Query: 814 FIAAPILLFIYDWRAKNAR 832
             A   L    + R  N +
Sbjct: 406 LGARLFLGLWVNSRILNGK 424



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 20/122 (16%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 13  MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DDFVNG 68
           +     ++I+L   +  +++D          I LGLDL+GG  ++ EV+      +   G
Sbjct: 12  LAAFFAIIISLGILIAATVMDHVDD------IRLGLDLQGGFEVLYEVEPLDEETEITRG 65

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQ-NKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
            L      L + +   G+   S+     ++I +  A    + +  + ++   +       
Sbjct: 66  LLTDTVSALNARVDVLGVSEPSITIEGEDRIRVQLAGIEDQSSARELLSTEARLSFRDTE 125

Query: 128 VD 129
            +
Sbjct: 126 NE 127


>gi|257061289|ref|YP_003139177.1| acriflavin resistance protein [Cyanothece sp. PCC 8802]
 gi|256591455|gb|ACV02342.1| acriflavin resistance protein [Cyanothece sp. PCC 8802]
          Length = 1061

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/555 (12%), Positives = 167/555 (30%), Gaps = 45/555 (8%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            ++L   +  +G+       +    +D  PS      I L LD  G           +  
Sbjct: 23  TLMLTLAVMVVGIF-----LVTTIQVDLLPSITYPR-IGLRLDTPGI--------APEIA 68

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    ++  S  +         R+ Q  + L F      +   +  T       + L
Sbjct: 69  IDEITRPLEQALSAAEGVEQIYSQTREGQVSLDLFFRVGGNIDQALNDATTAFNRARNTL 128

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             + +   L      ++ +   +  +   I   +E  +    +   ++ +         S
Sbjct: 129 PENLETPRLFKADPSQLPV--YEFALTSPIKKEVELRVFADEELGRELSVVPGVALVDVS 186

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +  ++    D +RL+ L      +                     +D  G + L E+ 
Sbjct: 187 GGVEEEVRINIDLNRLQALGVGLNDVLERL-------------EETNQDVSGGRLLGENG 233

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
             ++        A+        V   +     +RR +      +            L   
Sbjct: 234 EPLTRAVGRFQNADEIRNLSLEVNGETSSMSPSRRVYLRDFAEVIDGTEEQRIFVSLNGE 293

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRA--GSLPIKLNIVEERNVGADLGSDSIYKG 364
              +     + + +    +E        L+           +           + +    
Sbjct: 294 PAVKISVQKQPEANTIEVVEAVKQKLEELKQTGIIPEDITFVPTLDESIFIRNAINNVIS 353

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           +  +   L  I + + +   +   +   SI L  +  + L+ L G +L + S+ G+ LG+
Sbjct: 354 SGLMGTALAAIAVLLFLGSLRQTFIIVLSIPLATLGAIILMKLFGLSLNVFSLGGLALGV 413

Query: 425 GLAVDSNILVNERIRE--------ENRKNQSVFCSLDMGFSRAY---STIFDSNITALIA 473
           G+ VD++I++ E I E        ++         ++     +    S +  S  T L+A
Sbjct: 414 GIVVDNSIVMLETIAEGVGVTPGKDSNSRLKSHQLINQSIESSQSVESALIASTSTNLVA 473

Query: 474 TVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +     GG          +T+  ++  S+  A++IV  +   ++       +       
Sbjct: 474 VLPFLMIGGFISLLFNELILTISFAVAASIVVALTIVPMLTSRLLAIPWSSGLTKFWPLY 533

Query: 531 FFLIPDCIAIQFMRA 545
           +F      A Q  + 
Sbjct: 534 WFNRSFEAATQQYKR 548



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 97/250 (38%), Gaps = 21/250 (8%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R   E +   +             V++  Q         V+E VK+K+ E+     I  
Sbjct: 271 LRDFAEVIDGTEEQRIFVSLNGEPAVKISVQKQPEANTIEVVEAVKQKLEELKQTGIIPE 330

Query: 654 TEIVGPKISREL---------IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                P +   +         I  G++G  ++AIA+L+++            + ++ L  
Sbjct: 331 DITFVPTLDESIFIRNAINNVISSGLMGTALAAIAVLLFLG---SLRQTFIIVLSIPLAT 387

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-----KLYTTSISFRD 759
              +    LFG+  N+ ++  +   +G  V++ +V+ + + + +     K   + +    
Sbjct: 388 LGAIILMKLFGLSLNVFSLGGLALGVGIVVDNSIVMLETIAEGVGVTPGKDSNSRLKSHQ 447

Query: 760 LIDKSI---NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           LI++SI          + ++    ++VLP  + GG  I      +   I  A ++SI +A
Sbjct: 448 LINQSIESSQSVESALIASTSTNLVAVLPFLMIGG-FISLLFNELILTISFAVAASIVVA 506

Query: 817 APILLFIYDW 826
             I+  +   
Sbjct: 507 LTIVPMLTSR 516



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 87/224 (38%), Gaps = 6/224 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +  ++ +     +  + +  L+ V + + E+     ++       K + +L     +  
Sbjct: 838  NQRQVMIIVGNLSEGASLSAALQEVNQVLGELELPEGVRILPSNAQKSNEQLQASLGILG 897

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++A  + + + +++      L  + TL L +   +    +       T +   + L+G 
Sbjct: 898  GLAAFLVFVVMAVQYNSLIDPLVIMVTLPLALGGGILGLYVTQTAIGATVIVGAVLLVGI 957

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
             VN+ +++ +    N          +  I ++  + L   + T++   + + P+A+    
Sbjct: 958  VVNNAIIMVE--LANQIRAEKHCDRKTAILEASPQRLRPILMTTITTVLGMFPLALNLGA 1015

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG  +    I +  G+ +A   ++ I   + L ++D      ++
Sbjct: 1016 GGEFLQPLGIVVFSGLSLATLLTLLIIPCVYLLLHDLFKPLIKL 1059


>gi|70725792|ref|YP_252706.1| hypothetical protein SH0791 [Staphylococcus haemolyticus JCSC1435]
 gi|68446516|dbj|BAE04100.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 1060

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 62/548 (11%), Positives = 149/548 (27%), Gaps = 46/548 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + + L  ++  +G + +      +  L+  P A                   +     
Sbjct: 12  NKFAIFLMVVLVILGGVYSSA----KLKLELLPDAENPVI---------SVQTTMPGATP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
                 +    D     L           Q  + +T+ + +    +   + +   +  + 
Sbjct: 59  QTTQDEISSKIDNQVRSLAYVKSVETQSIQNASIVTVEYNNGTDMDKAEEVLKKEIDKL- 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                   +  L   +     IV                + EI  Q I ++   +     
Sbjct: 118 -DFKDGVSEPELTRNSMDAFPIVAYSF--TNKNDDLKTTTKEINDQLIPKLQTVDGVQNA 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             + +   Q+  +   ++L +   T   +  +           +F       S       
Sbjct: 175 QLNGQTTRQVTLKFKQNKLDEAGLTADDVENYIKTATRETPLGLFQFGKNEKSLVVDGQF 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +    +  + +    +             S            +  +     +   +G + 
Sbjct: 235 KSVKALKDLEIPLTISGQSQSGSSDDQSGSEMSSTGDNASSSSSQSQMSNQSQASNGEMP 294

Query: 304 TAP----------------------VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLP 341
           + P                                   +     + A          +  
Sbjct: 295 SVPLSELATITVGDERESISKTNGKDAVNVQIMKAQDANTVQVAKEAQNKIDEFVKNNDD 354

Query: 342 IKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILT 401
           IK              S        A+   + +IV+ + +   +   ++  SI L++++ 
Sbjct: 355 IKATK-TMDTAKPIEDSLYTMVEKAALGTIVAIIVILLFLRNIRTTAISIVSIPLSILIA 413

Query: 402 LALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQ---SVFCSLDMGFSR 458
           L  L L   +L + ++  + + I   +D +I+V E I       +   S    +      
Sbjct: 414 LIALKLSDVSLNILTLGALTIAISRVIDDSIVVVENIYRRLSDPKEELSGNNLVISATRE 473

Query: 459 AYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFII 515
            +  I  S I  +I  + L F     G   R FA+ +  S+L S+  +I++V A+     
Sbjct: 474 VFKPILSSTIVTIIVFLPLAFVSGSVGEMFRPFALAIAFSLLASLLVSITVVPALASTFF 533

Query: 516 RYKKMKSI 523
           +       
Sbjct: 534 KKGIKLKR 541



 Score = 91.3 bits (224), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 101/268 (37%), Gaps = 8/268 (2%)

Query: 569  LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
             N    +       +    P   +V   ++  L+      +    + ++   +  +  DS
Sbjct: 796  QNKQTYWSRNKLNNMELKSPTGETVKLKDIAELERTTTPSKLVQEDGDYATTVSGKITDS 855

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                   +++ K      P +   N       I++ + +     ++++ + + + + I F
Sbjct: 856  DVGGVSSKVMNKINNIDKPDNVKVNVGGATDDINQAMTQLAF-AMLVAIVIVYLVLVITF 914

Query: 689  KW-YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            K        + +L   I   +    + G   ++ ++  +L LIG  V + +V+ DR+   
Sbjct: 915  KGGLAPFTILFSLPFTIIGVVLALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRV--- 971

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI---GSFAIPMAFG 804
            +      +S ++ + ++    +   + T++A   ++LP+     S I      A  +  G
Sbjct: 972  ITNEHEGMSMKEALLEAGGTRIRPILMTAIATIGALLPLLFGQDSSILISKGMAATVIGG 1031

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNAR 832
            ++ +   ++ +   I   ++  + K  R
Sbjct: 1032 LISSTLLTLIVVPVIYEILFTLKGKLTR 1059



 Score = 90.9 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 85/234 (36%), Gaps = 3/234 (1%)

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKI 661
              +   +    +   +  ++ Q  ++V   +  +    +  +         T      I
Sbjct: 308 DERESISKTNGKDAVNVQIMKAQDANTVQVAKEAQNKIDEFVKNNDDIKATKTMDTAKPI 367

Query: 662 SRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
              L        + + +A+++ +           +I ++ L I   L    L  +  N+ 
Sbjct: 368 EDSLYTMVEKAALGTIVAIIVILLFLRNIRTTAISIVSIPLSILIALIALKLSDVSLNIL 427

Query: 722 AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            + A+   I   ++D +VV + + + +      +S  +L+  +  E     + +++   I
Sbjct: 428 TLGALTIAISRVIDDSIVVVENIYRRLSDPKEELSGNNLVISATREVFKPILSSTIVTII 487

Query: 782 SVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             LP+  V G  G +   FA+ +AF ++ +   SI +   +    +    K  R
Sbjct: 488 VFLPLAFVSGSVGEMFRPFALAIAFSLLASLLVSITVVPALASTFFKKGIKLKR 541


>gi|254777412|ref|ZP_05218928.1| MmpL11 protein [Mycobacterium avium subsp. avium ATCC 25291]
          Length = 1007

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 71/523 (13%), Positives = 174/523 (33%), Gaps = 68/523 (13%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL---PSIAGIVLGI 424
               ++LIVL  +        +        V++T+ L+ LL A  T+    +    + GI
Sbjct: 182 WNLPVILIVLLAVFGSLAAAAIPLALGICTVVVTMGLVYLLSAYTTMSVFVTSTVSMFGI 241

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            LAVD ++ +  R REE R  +    ++D   + +   +  S +T + +   ++     A
Sbjct: 242 ALAVDYSLFILMRFREELRSGRQPREAVDAAMATSGLAVVLSGMTVIASLTGIYVINTPA 301

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           ++  A    L++ ++M T+ ++  A +    R    +S  ++   R          +++ 
Sbjct: 302 LKSMATGAILAVAVAMLTSTTLTPAALATFGRAAAKRSALLHWSRRPESTQPKFWNRWIG 361

Query: 545 ARFWGVGISILFSICSICLLFTHGLNY---------------------------GIDFKG 577
                  +S L +   + ++     +                            G    G
Sbjct: 362 WVMRRPWMSALAASLVLLVMAAPAASMVLGNSLLRQFDSSHEIRAGVGAAAQALGPGALG 421

Query: 578 GIQLGVLANR----------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
            I++ +               V     R       +     Q  +   + L+        
Sbjct: 422 PIRVLINFPDGGAASPEHSHTVGAVRQRMAQAPNIVSVSPPQFAEDNGSALLSAVLSVDP 481

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYI 684
              + R      +     V  +     ++ GP    +     +     +++  +A++ ++
Sbjct: 482 EDMKARETVGWMRAELPKVSEAGTARVDVGGPTALIKDFDDRVSATEPLVLGFVALIAFV 541

Query: 685 WIR---FKWYFALGAITTLILDITKT---------------LGFFALFGIEFNLTAVAAV 726
            +       + AL  +   +L +                  LGF  +  I+  +  +  +
Sbjct: 542 MLLVSIHSVFLALKGVLMTLLSVAAAYGSLVMVFQWGWLRDLGFAQISSIDSTVPPL-VL 600

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G S++ ++ +  R+R+    +  S + RD +   +  T  R++ ++    I+V   
Sbjct: 601 AMTFGLSMDYEIFLLTRIRE---RFLHSGNTRDAVAYGV-STSARTITSAALIMIAVFVG 656

Query: 787 AVW-GGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
             + G  ++    +  A  I V      + +   ++     W 
Sbjct: 657 FAFAGMPLVAEIGVACAVAIAVDATVVRLVMVPALMAMFAQWN 699


>gi|218247376|ref|YP_002372747.1| acriflavin resistance protein [Cyanothece sp. PCC 8801]
 gi|218167854|gb|ACK66591.1| acriflavin resistance protein [Cyanothece sp. PCC 8801]
          Length = 1061

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/555 (12%), Positives = 167/555 (30%), Gaps = 45/555 (8%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
            ++L   +  +G+       +    +D  PS      I L LD  G           +  
Sbjct: 23  TLMLTLAVMVVGIF-----LVTTIQVDLLPSITYPR-IGLRLDTPGI--------APEIA 68

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    ++  S  +         R+ Q  + L F      +   +  T       + L
Sbjct: 69  IDEITRPLEQALSAAEGVEQIYSQTREGQVSLDLFFRVGGNIDQALNDATTAFNRARNTL 128

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             + +   L      ++ +   +  +   +   +E  +    +   ++ +         S
Sbjct: 129 PENLETPRLFKADPSQLPV--YEFALTSPMKKEVELRVFADEELGRELSVVPGVALVDVS 186

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
             +  ++    D +RL+ L      +                     +D  G + L E+ 
Sbjct: 187 GGVEEEVRINIDLNRLQALGVGLNDVLERL-------------EETNQDVSGGRLLGENG 233

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
             ++        A+        V   +     +RR +      +            L   
Sbjct: 234 EPLTRAVGRFQNADEIRNLSLEVNGETSSMSPSRRVYLRDFAEVIDGTEEQRIFVSLNGE 293

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRA--GSLPIKLNIVEERNVGADLGSDSIYKG 364
              +     + + +    +E        L+           +           + +    
Sbjct: 294 PAVKISVQKQPEANTIEVVEAVKQKLEELKQTGIIPEDITFVPTLDESIFIRNAINNVIS 353

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           +  +   L  I + + +   +   +   SI L  +  + L+ L G +L + S+ G+ LG+
Sbjct: 354 SGLMGTALAAIAVLLFLGSLRQTFIIVLSIPLATLGAIILMKLFGLSLNVFSLGGLALGV 413

Query: 425 GLAVDSNILVNERIRE--------ENRKNQSVFCSLDMGFSRAY---STIFDSNITALIA 473
           G+ VD++I++ E I E        ++         ++     +    S +  S  T L+A
Sbjct: 414 GIVVDNSIVMLETIAEGVGVTPGKDSNSRLKSHQLINQSIESSQSVESALIASTSTNLVA 473

Query: 474 TVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +     GG          +T+  ++  S+  A++IV  +   ++       +       
Sbjct: 474 VLPFLMIGGFISLLFNELILTISFAVAASIVVALTIVPMLTSRLLAIPWSSGLTKFWPLY 533

Query: 531 FFLIPDCIAIQFMRA 545
           +F      A Q  + 
Sbjct: 534 WFNRSFEAATQQYKR 548



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 97/250 (38%), Gaps = 21/250 (8%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R   E +   +             V++  Q         V+E VK+K+ E+     I  
Sbjct: 271 LRDFAEVIDGTEEQRIFVSLNGEPAVKISVQKQPEANTIEVVEAVKQKLEELKQTGIIPE 330

Query: 654 TEIVGPKISREL---------IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
                P +   +         I  G++G  ++AIA+L+++            + ++ L  
Sbjct: 331 DITFVPTLDESIFIRNAINNVISSGLMGTALAAIAVLLFLG---SLRQTFIIVLSIPLAT 387

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM-----KLYTTSISFRD 759
              +    LFG+  N+ ++  +   +G  V++ +V+ + + + +     K   + +    
Sbjct: 388 LGAIILMKLFGLSLNVFSLGGLALGVGIVVDNSIVMLETIAEGVGVTPGKDSNSRLKSHQ 447

Query: 760 LIDKSI---NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIA 816
           LI++SI          + ++    ++VLP  + GG  I      +   I  A ++SI +A
Sbjct: 448 LINQSIESSQSVESALIASTSTNLVAVLPFLMIGG-FISLLFNELILTISFAVAASIVVA 506

Query: 817 APILLFIYDW 826
             I+  +   
Sbjct: 507 LTIVPMLTSR 516



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/224 (12%), Positives = 87/224 (38%), Gaps = 6/224 (2%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +  ++ +     +  + +  L+ V + + E+     ++       K + +L     +  
Sbjct: 838  NQRQVMIIVGNLSEGASLSAALQEVNQVLGELELPEGVRILPSNAQKSNEQLQASLGILG 897

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++A  + + + +++      L  + TL L +   +    +       T +   + L+G 
Sbjct: 898  GLAAFLVFVVMAVQYNSLIDPLVIMVTLPLALGGGILGLYVTQTAIGATVIVGAVLLVGI 957

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
             VN+ +++ +    N          +  I ++  + L   + T++   + + P+A+    
Sbjct: 958  VVNNAIIMVE--LANQIRAEKHCDRKTAILEASPQRLRPILMTTITTVLGMFPLALNLGA 1015

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG  +    I +  G+ +A   ++ I   + L ++D      ++
Sbjct: 1016 GGEFLQPLGIVVFSGLSLATLLTLLIIPCVYLLLHDLFKPLIKL 1059


>gi|56130692|ref|YP_145595.1| cation efflux system transmembrane protein [Ralstonia metallidurans
           CH34]
 gi|94152382|ref|YP_581789.1| heavy metal resistance protein CzcA [Cupriavidus metallidurans
           CH34]
 gi|110282954|sp|P13511|CZCA_RALME RecName: Full=Cobalt-zinc-cadmium resistance protein CzcA; AltName:
           Full=Cation efflux system protein CzcA
 gi|56068682|emb|CAI11244.1| cation efflux system transmembrane protein [Cupriavidus
           metallidurans CH34]
 gi|93358752|gb|ABF12839.1| CzcA, efflux chemoosmotic pump, three components cation proton
           antiporter efflux system involved in Cd(II), Zn(II),
           Co(II) resistance [Cupriavidus metallidurans CH34]
          Length = 1063

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/603 (10%), Positives = 151/603 (25%), Gaps = 66/603 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L         + +      +  +D  P                 +++ ++V+   
Sbjct: 13  RWLVLLAVFGMAGLGIFS----YNRLPIDAVPDI---------------TNVQVQVNTSA 53

Query: 65  F------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                           + + + L          R   +++T+ F D          V   
Sbjct: 54  PGYSPLETEQRATYPIEVVMAGLPGLEQTRSLSRYGLSQVTVIFKDGTDVYFARQLVNQR 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRID 172
           +Q     L       +   +T      + +          D       +           
Sbjct: 114 IQEAKDNLPEGVVPAMGPISTGLGEIYLWTVEAEEGARKADGTAYTPTDLREIQDWVVRP 173

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           Q+       +         Q        RL     T   +       N++          
Sbjct: 174 QLRNVPGVTEINTIGGFNKQYLVAPSLERLASYGLTLTDVVNALNKNNDNVGAGYIE--- 230

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                G QYLV    +++                  + +I       +        ++  
Sbjct: 231 ---RRGEQYLVRAPGQVASED--------------DIRNIIVGTAQGQPIRIRDIGDVEI 273

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
              +           +           +     +      A +          +      
Sbjct: 274 GKELRTGAATENGKEVVLGTVFMLIGENSRAVSKAVDEKVASINRTMPEGVKIVTVYDRT 333

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                + +  K      A LV+++LF+ +   +  L+    I L ++ T   +     + 
Sbjct: 334 RLVDKAIATVKKNLLEGAVLVIVILFLFLGNIRAALITATIIPLAMLFTFTGMVNYKISA 393

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERI-----REENRKNQSVFCS-----LDMGFSRAYST 462
            L S+  +  GI   +D  +++ E         +    + +  S     +      A   
Sbjct: 394 NLMSLGALDFGII--IDGAVVIVENCVRRLAHAQEHHGRPLTRSERFHEVFAAAKEARRP 451

Query: 463 IFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +    +  +I  + +F      G      A T+ L++L +M  +++ V A +   I  + 
Sbjct: 452 LIFGQLIIMIVYLPIFALTGVEGKMFHPMAFTVVLALLGAMILSVTFVPAAVALFIGERV 511

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            +  +   L         +              ++   +C                +G I
Sbjct: 512 AEKENRLMLWAKRRYEPLLEKSLANTAVVLTFAAVSIVLCVAIAARLGSEFIPNLNEGDI 571

Query: 580 QLG 582
            + 
Sbjct: 572 AIQ 574



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 57/133 (42%), Gaps = 9/133 (6%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  AL+  GI  ++TA    + L G +V + +V+   +R    L     S    +
Sbjct: 915  FALTGGILALWIRGIPMSITAAVGFIALCGVAVLNGLVMLSFIR---SLREEGHSLDSAV 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   L   + T++ A +  +PMA+    G  V    A  +  GI+ + + ++ +  P
Sbjct: 972  RVGALTRLRPVLMTALVASLGFVPMAIATGTGAEVQRPLATVVIGGILSSTALTLLVL-P 1030

Query: 819  ILLFIYDWRAKNA 831
            +L  +   + ++A
Sbjct: 1031 VLYRLAHRKDEDA 1043



 Score = 45.1 bits (104), Expect = 0.047,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + ++I          AL   T + L +  T      + I  NL ++ A+    G 
Sbjct: 348 LEGAVLVIVILFLFLGNIRAALITATIIPLAMLFTFTGMVNYKISANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDR-MR------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++  VV+ +  +R      ++     T       +  +  E     ++  +   I  LP
Sbjct: 406 IIDGAVVIVENCVRRLAHAQEHHGRPLTRSERFHEVFAAAKEARRPLIFGQLIIMIVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    A  +   ++ A   S+ F+ A + LFI +    K  R+
Sbjct: 466 IFALTGVEGKMFHPMAFTVVLALLGAMILSVTFVPAAVALFIGERVAEKENRL 518


>gi|311696894|gb|ADP99767.1| transporter, AcrB/AcrD/AcrF family protein [marine bacterium HP15]
          Length = 1033

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 61/531 (11%), Positives = 152/531 (28%), Gaps = 44/531 (8%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             ++  +G ++AL     +  +  FP+                  +V      + V   +
Sbjct: 1   MMLVMLLGGVLAL----TRMNIQFFPTFALDVV---------SVRVVWSGASAEDVEQGI 47

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               ++    +        +  Q  + ITL F +        D V   +    +    + 
Sbjct: 48  TNPLEQRLRSVDGLKKMTSTSAQSVSSITLEFEEGTNPIQALDDVRQQVDEFTN-FPAEA 106

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
           ++  +      E  +       D   S   + +     + + +        +        
Sbjct: 107 EEPQVTRIERYE-PVARLLVYGDVDRSELRQMAYRFEDELLQR-----GIDRVSIRGLPE 160

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            Q+  +    RL  L  +  +++          +    G+   +D+      VE +    
Sbjct: 161 QQISIDVPVERLETLGLSLEQIAERVAA---ISRDLPAGMMAQQDATRELRAVEQR---- 213

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                        ++ +   +I        +        I +                 +
Sbjct: 214 -------------RSPQEFENIPVLSGERVQLHLGDVAIIRQEARESQVTLEKDGKPAVE 260

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                    +     +         R    P     V +          S+         
Sbjct: 261 LQLQRSENGNSLEAAKVLENWLTDTRPVLPPTVELEVYDETWQLLDDRISLLVKNGLGGL 320

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            LV+ +L++ +       VA   I    +  +A+L L+G ++ + S+  +++ +G+ VD 
Sbjct: 321 VLVICLLYLFLPGRVALWVAVG-IPTAFLAAMAVLWLIGGSINMISLFALIMALGVIVDD 379

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRG 487
            I+V E      R  +    + +    R    +  S++T + A + L   G   G  +  
Sbjct: 380 AIVVGEDADAHARMGEESIYASEGAAKRMVWPVLASSLTTVAAFMPLLVVGGVIGNILGD 439

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
             + M   ++ S+     ++ A +      ++ K    +   +   I    
Sbjct: 440 IPLVMICVLVASLLECFIVLPAHLRHAFVPRRKKKSQASEPKKPGPIERFR 490



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 82/235 (34%), Gaps = 11/235 (4%)

Query: 576 KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               ++ +       + + +      + G  + ++ +G     V        S     + 
Sbjct: 763 STLSRITIRVPDGRFVPLTQVMNLDHRQGFQALRHAEGRLAVEVTSGLNTRVSTTDQILT 822

Query: 636 EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFAL 694
            +  + + +I     ++ +        RE +     G++I    M + +   F  W   L
Sbjct: 823 SLEAEALPDIASRYNVRYSFEGRAADQRETLGDMQTGLVIGLALMYVVLAWVFASWSLPL 882

Query: 695 G--AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
              AI    L +   LG   L G++  + ++  +  L G  VN+ +++        +   
Sbjct: 883 IVMAIIPFAL-VGALLG-HWLMGLQLTILSLFGLFGLSGIVVNNAIILVAFYN---QQRK 937

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
             +   D ++++  + +   + TS+     +LP+          +   A  +AFG
Sbjct: 938 KGLDITDALNEAAVQRVRAVMLTSLTTIGGLLPLLFETSLQAQFLIPMATSIAFG 992



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/205 (16%), Positives = 76/205 (37%), Gaps = 13/205 (6%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              L   +  +   V L     T  +       L++ G+ G+++    + +++  R   +
Sbjct: 279 ENWLTDTRPVLPPTVELEVYDETWQLLDDRISLLVKNGLGGLVLVICLLYLFLPGRVALW 338

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            A+G  T         +    L G   N+ ++ A++  +G  V+D +VV +         
Sbjct: 339 VAVGIPTA----FLAAMAVLWLIGGSINMISLFALIMALGVIVDDAIVVGE---DADAHA 391

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVA 808
                     + +    +   + +S+    + +P+ V GG    ++G   + M   ++VA
Sbjct: 392 RMGEESIYASEGAAKRMVWPVLASSLTTVAAFMPLLVVGGVIGNILGDIPLVMIC-VLVA 450

Query: 809 ASSSIFIAAP--ILLFIYDWRAKNA 831
           +    FI  P  +       R K +
Sbjct: 451 SLLECFIVLPAHLRHAFVPRRKKKS 475


>gi|58581186|ref|YP_200202.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58425780|gb|AAW74817.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 1019

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/552 (12%), Positives = 159/552 (28%), Gaps = 36/552 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR++   +   ++I   G++  +     +         +                +    
Sbjct: 8   MRSSRLTLFAAALILIGGIVAFVGFPSQEEPSVTVRDTL--------------VSVAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS-FADSRFKENIADKVTLFL 119
              + V   L    +     L      V ++R     + L+ + D +    +   V    
Sbjct: 54  MPSEQVENLLARPVEAQLRELAGIKRIVTTVRPGSAIVQLTAYDDVQDLPALWQHVRAKA 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L        +    +    + ++   +        E     +R+  +Q+     
Sbjct: 114 AEAGAQLPAGTLGPFV---DDDFGRVSVASIAVTAPGFSMSEMRG-PLRRMREQLYGVPG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q         ++    D +RL     T + +       N    G    V  L  +   
Sbjct: 170 VEQVKVFGLQDERVYVSFDRARLLASGLTPSSVMAQLRAQNVVGSGGQVAVSGLALTVAT 229

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +    ++ G+ L+              V  +                   P      
Sbjct: 230 SGEIRTPGQLRGVLLS--------------VPGASVGGSREVTLGELAQVQVMPADPPQS 275

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             V         +       S    +  A        A  LP+             +  +
Sbjct: 276 AAVYQGQPAGWWLSVSMQPGSNIADVGKALRAKLDDTARQLPVGFTQHVVSFQADVVERE 335

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                       ++++ + M+ L  + GL+    + L +  +L ++ +L   L   SIA 
Sbjct: 336 MGKMHHVMGETIVIVMAVVMLFLGWRTGLIVGAIVPLTIFASLIVMRVLDVELQTVSIAA 395

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I+L +GL VD+ I++ E I       +    +         + +  S++  ++A    FF
Sbjct: 396 IILALGLLVDNGIVIAEDIERRLVAGEERRQACIDAGRTLATPLLTSSLVIVLAFSPFFF 455

Query: 480 FGGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                    R  AI +G+++L S   +I++   + ++  +    K  +            
Sbjct: 456 GQTSTNEYLRSLAIVLGVTLLGSWLLSITVTPLLCMYFAKVHVTKRDEAESRFYRGYRRV 515

Query: 537 CIAIQFMRARFW 548
              +   +A F 
Sbjct: 516 IERVLQHKALFI 527



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 72/204 (35%), Gaps = 6/204 (2%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            +    R+   +            I        + ++ L+      +      +L+++W  
Sbjct: 821  TEIVERLSAPIAALKLPPGYRVEIGGELEDSAEANQALLHYMPHALG---AILLLFVWQF 877

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              +      ++ +   +        L G  F   A   +L L G  VN+ V++  R+   
Sbjct: 878  NSFRKLCIVLSAVPFVLIGAALALVLTGYPFGFMATFGLLALAGIIVNNAVLLLQRIEAE 937

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +      +  R+ +  +  + L   V T +   + ++P+ ++ G +    AI M  G+ +
Sbjct: 938  LAD---GLPRREAVVAAAVKRLRPIVMTKLTCIVGLVPLMLFAGPLWTGMAITMIGGLAL 994

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
                ++ +   +   ++  R +  
Sbjct: 995  GTLVTLGLIPILYDLLFGLRMRRG 1018



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++I    +++++  R      +GAI  L   I  +L    +  +E    ++AA++  +G 
Sbjct: 347 IVIVMAVVMLFLGWRTGLI--VGAIVPL--TIFASLIVMRVLDVELQTVSIAAIILALGL 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V++ +V+ + +    +L       +  ID     TL   + TS    +       +G +
Sbjct: 403 LVDNGIVIAEDI--ERRLVAGEERRQACIDAG--RTLATPLLTSSLVIVLAFSPFFFGQT 458

Query: 793 V----IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + S AI +   ++ +   SI +   + ++   
Sbjct: 459 STNEYLRSLAIVLGVTLLGSWLLSITVTPLLCMYFAK 495


>gi|298675646|ref|YP_003727396.1| hydrophobe/amphiphile efflux-3 (HAE3) family transporter
           [Methanohalobium evestigatum Z-7303]
 gi|298288634|gb|ADI74600.1| efflux transporter, hydrophobe/amphiphile efflux-3 (HAE3) family
           [Methanohalobium evestigatum Z-7303]
          Length = 745

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/716 (10%), Positives = 198/716 (27%), Gaps = 38/716 (5%)

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
           +T+  + +V   +     +  ++ +  + +      + ++ +       +   I      
Sbjct: 28  STQSIVVLVEGDDVKTPEVMKSMNRLEKQVDPLSGVVQVTSAASIVEEMNYQKIGKREIP 87

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY-LVEDKVEISGIHLNG 256
           D       L +            ++            D   +     E  V ++G     
Sbjct: 88  DTKEEINSLLSNTNTGKTLPDDTHALVFVEVEGDISNDELRDILHETEKSVSMTGFPPGY 147

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ--AIPS 314
           +            ++   +E             I     V    R    P+I     I  
Sbjct: 148 SVTVTGEPAFSLAMEELMNESMPPLMAIAAVLMIIALYLVFRHVRWRLLPLIIVFLGIIY 207

Query: 315 GKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVL 374
               +       +   ++A      L I   I     +  +L      K           
Sbjct: 208 TFGAMGYLEIPMSMVSMSAFPILIGLGIDYAIQFHSRIEEELERLHDEKEAVIETVKHTG 267

Query: 375 IVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV 434
             + + ++    G V+ ++  + ++   A L L+G  +   S   + + +   +DS    
Sbjct: 268 PAVLIALIITSLGFVSLYTSTVPMVQDFAKLLLIGVIMCFLSSLFVGVSVIYGLDSIFKK 327

Query: 435 NERIREENRKNQSVF--------------CSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           N ++                           ++    +  S      +T L+   +L   
Sbjct: 328 NNKLINAINSKIKYDSNSNSGKNTEEQKNDIIERYIDKVTSFTIKHPVTILLIAGLLCVS 387

Query: 481 GGGAVRGFAI-TMGLSILISMFTAISIVRAMMIFIIRYKKMK---SIDINPLSRFFLIPD 536
           G    +   + T   + +     A+  ++ +   I    ++     +D N   +     D
Sbjct: 388 GLYVDQDVPLETDTETFVPQDMKALVEMQHLFDIISGNDQLNLIIKVDDNTDPQILKWMD 447

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
             +   +  R      S +  I          +N G       ++  L N+  D    R 
Sbjct: 448 YFSNHEIETRDNIYDSSSIVPI-------IKSMNSGTIPDSSDKIQELYNQMPDGQKERY 500

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
              +  +          +    +      G       V + +           TI    +
Sbjct: 501 IHGNTMLLMNL------DMGDAMSNLGLEGIDELVKVVRKDISWTQPPADADVTITGNSV 554

Query: 657 VGPKISRELIRKGIVGVIISAIAMLI-YIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
           V   +   L    I   ++    +    ++I   W  A+  + T+ + +    G     G
Sbjct: 555 VFTTVITALTSGRIAMTLLGLSLIFAGLLFIYRDWLKAITPVITMFMVVGWAGGVMYYSG 614

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
           I++          ++G      V++ +R  +     +   +  + + +S  +     V +
Sbjct: 615 IKYTPMTATLGALILGIGSEYAVLMMERYFEE---KSKGENPIEAMRESSRKIGKAIVTS 671

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                     +     S+  +F +     + +A  ++  +   +++ +   R K  
Sbjct: 672 GFTTVFGFSALLASPFSMNRNFGLVTVIDVGLALLATFIVFPAVIILLDGHREKKK 727



 Score =  104 bits (259), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 670 IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           ++ +    + + +Y+  R  +W   L  +  + L I  T G      I  ++ +++A   
Sbjct: 172 LMAIAAVLMIIALYLVFRHVRWR--LLPLIIVFLGIIYTFGAMGYLEIPMSMVSMSAFPI 229

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           LIG  ++  +  + R+ + +         ++ + +++  T    +   +   +  + +  
Sbjct: 230 LIGLGIDYAIQFHSRIEEEL---ERLHDEKEAVIETVKHTGPAVLIALIITSLGFVSLYT 286

Query: 789 WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
               ++  FA  +  G+++   SS+F+   ++  +     KN ++
Sbjct: 287 STVPMVQDFAKLLLIGVIMCFLSSLFVGVSVIYGLDSIFKKNNKL 331


>gi|157691438|ref|YP_001485900.1| resistance-nodulation-cell division acriflavin:proton (H+)
           antiporter [Bacillus pumilus SAFR-032]
 gi|157680196|gb|ABV61340.1| RND superfamily resistance-nodulation-cell division
           acriflavin:proton (H+) antiporter [Bacillus pumilus
           SAFR-032]
          Length = 1074

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 73/726 (10%), Positives = 187/726 (25%), Gaps = 78/726 (10%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + ++  ++   GL   L         +  P+                       
Sbjct: 9   LKNKFAVWLMTIIVTVAGLYAGL-----NMKQESIPNINTPVIT---------VSTTYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D V+  +    ++    L    +   +  +  + I + +  ++  +    ++   + 
Sbjct: 55  ATPDEVSDKVTNPIEKSIQNLNGVNVVTSNSFENASSIQIEYDYNKDMDEAKKEIEDAIS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +N     + +K  +   +   I I+    + D+     + Q +E     +  I   +  
Sbjct: 115 NIN--FPENAEKPKIARFSINAIPILAISVSGDKESLENLTQKVE--NDLVPSIEGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       +L++       +       + +    ++     + S    
Sbjct: 171 SSVEASGQQIKEVEFSFKQKKLKEYGLDEETVQNMIKGSDVNVPLGLYTFGNKQKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    ++  + +    +             S             +             
Sbjct: 231 GNILSVKDLKNMRIPVTPSASGGAGSAGAGAPSSGAENPGAQGAEQQAGNASQQQAAAQQ 290

Query: 301 RVLTAPVINQAI---------------------------------PSGKAQISGNFTIET 327
           +        Q++                                    K   +   ++  
Sbjct: 291 QPGGGTASAQSVELPTIKLSDIADIKVVKEAESISRTNGKDSIGLQIVKGSDANTVSVAE 350

Query: 328 AGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWG 387
                                         S S       I A   +I++ + +   K  
Sbjct: 351 EVTKELEKFKKDNKGIKVSTTYDQAEPIKESVSTMLNKAIIGAIFAIIIIMLFLRDIKST 410

Query: 388 LVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQS 447
           L++  SI L++++ + LL+ L  TL + ++  + + IG  VD +I+V E I         
Sbjct: 411 LISVISIPLSLLIAVLLLNQLDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMALKDE 470

Query: 448 V---FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---VRGFAITMGLSILISMF 501
                  +       +  I  S I  +   + L   GG        FA+T+  ++L S+ 
Sbjct: 471 PLKGKALVREATKEMFIPIMSSTIVTIAVFLPLALVGGMIGELFIPFALTIVFALLASLL 530

Query: 502 TAISIVRAMMIFIIRYK----KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
            AI+IV  M   + +        K  +  P          +               ++  
Sbjct: 531 VAITIVPMMAHSLFKKNLYGTAKKVKEHKPSKLAGGYRRVLNWTLNHKWITSGIAILMLV 590

Query: 558 ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV-----------------VRSNLES 600
                             +    +                             V +   S
Sbjct: 591 GSLFLAPLVGVSFLPQQAEKTAMVTYTPEPGQTREQAIDETKKAEEYLIKRDHVNTVQYS 650

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
           L   +    +  G  N  +       D+    +  + V K + +       ++ +     
Sbjct: 651 LGSSNPMTASVGGNSNGALFFVQYDDDTPNFDKEKDKVTKALQDKTSKGEWKSQDFSSAG 710

Query: 661 ISRELI 666
            S  + 
Sbjct: 711 ASNTVT 716



 Score = 87.1 bits (213), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 93/262 (35%), Gaps = 8/262 (3%)

Query: 575  FKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
            +K    L            VR           +          +         +   + V
Sbjct: 811  YKSKKDLENKKITTPTGQEVRIGDVVKVKDGTTANTVTKRDGKIYAEVSGDMTTDNVSSV 870

Query: 635  LEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL 694
             + V+KK+ ++   S +            E   +  + ++ +   + + + I F    A 
Sbjct: 871  TQDVQKKVDKLDVKSGVTIDTGGVSADIEESFTQLGLAMLAAIAIVYLVLVITFGGGLAP 930

Query: 695  GAIT-TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
             AI  +L   +   L    +     +L A+  +L LIG  V + +V  DR+   +     
Sbjct: 931  FAILFSLPFTVIGALVGLFIAKETISLNAMIGLLMLIGIVVTNAIVFIDRV---IHKENE 987

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--GGSVI--GSFAIPMAFGIVVAA 809
             +S R+ + ++    L   + T++A   ++LP+A+   GGS I      + +  G+  + 
Sbjct: 988  GLSTREALLEAGTTRLRPILMTALATIGALLPLALGFEGGSQIVSKGLGVTVIGGLTSST 1047

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
              ++ I   +   +  +R K  
Sbjct: 1048 LLTLVIVPIVYEILSKFRRKKK 1069



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/252 (17%), Positives = 97/252 (38%), Gaps = 7/252 (2%)

Query: 579 IQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMV 638
             + +   +  D++ ++   E+  I   + ++  G +            +   T+ LE  
Sbjct: 300 QSVELPTIKLSDIADIKVVKEAESISRTNGKDSIGLQIVKGSDANTVSVAEEVTKELEKF 359

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT 698
           KK    I   +T    E +   +S  L +  I  +    I ML            L ++ 
Sbjct: 360 KKDNKGIKVSTTYDQAEPIKESVSTMLNKAIIGAIFAIIIIML----FLRDIKSTLISVI 415

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ L +   +       I  N+  + A+   IG  V+D +VV + + + M L    +  +
Sbjct: 416 SIPLSLLIAVLLLNQLDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMALKDEPLKGK 475

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFI 815
            L+ ++  E     + +++      LP+A+ G   G +   FA+ + F ++ +   +I I
Sbjct: 476 ALVREATKEMFIPIMSSTIVTIAVFLPLALVGGMIGELFIPFALTIVFALLASLLVAITI 535

Query: 816 AAPILLFIYDWR 827
              +   ++   
Sbjct: 536 VPMMAHSLFKKN 547


>gi|312132261|ref|YP_003999601.1| heavy metal efflux pump, czca family [Leadbetterella byssophila DSM
           17132]
 gi|311908807|gb|ADQ19248.1| heavy metal efflux pump, CzcA family [Leadbetterella byssophila DSM
           17132]
          Length = 1411

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/578 (12%), Positives = 162/578 (28%), Gaps = 47/578 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL-VLEV 60
           +N  ++  +  +    G+  A      +  +D  P              +  +H   L  
Sbjct: 11  QNKVFIAFMTLLWIIWGIWSA-----TKLPIDAVPDITNNQV-------QIYTHCPTLAT 58

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +    ++  + +          R   + IT+ F D          +   LQ
Sbjct: 59  Q---EVEQMVTFPIEQSIANVPDILEVRSISRFGLSVITVVFKDEVDIYFARQLLLERLQ 115

Query: 121 GVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                +  +  +     + T   +    +L      +    A E           Q+  +
Sbjct: 116 EAKDDIPSEIGRPELAPVSTGLGEVFQYLLHPKPGSEGKYDAKELRTLQDWVVARQLAGT 175

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +       L Q     +P R+R +  +   +       N +  G     R      
Sbjct: 176 PGIAEVNSFGGELKQYEVAINPDRIRAMGVSIPDIFQALESNNENTGGAYIDKRPNAYFI 235

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            +  +V+   +I  I +               V            +    D +G  + ++
Sbjct: 236 RSVGIVKSIEDIMQIPVKTVNGLPLLIKDVAEVRYGAAIRYGALTYNGEVDAVGGVVMML 295

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 + +  ++        ++       +             
Sbjct: 296 K-------------------GQNSHEVVQRIKAKLPQIQKSLPDDVIIEAYLDRTDLVGR 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +    +      A +V+ VL + +   + GL+   +I L+++  L ++ + G +  L S+
Sbjct: 337 AIQTVEKNLIEGALIVIFVLVLFLGNLRAGLIVASAIPLSLLFALGMMRIFGISANLMSL 396

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN-------ITA 470
             I    GL VD  ++V E         Q     +D    +A S I  S        +  
Sbjct: 397 GAI--DFGLIVDGAVIVVEATLHHLGVRQLTQKEMDEEVYKASSKIRKSAAFGEVIILLV 454

Query: 471 LIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            +  + L    G      A T+  +IL ++  +++ +  M  + +         I+    
Sbjct: 455 YLPILTLTGIEGKMFAPMAKTVAFAILGALILSMTYIPMMCAWFLPKNPKAQQSISDRMM 514

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
             L      +      +    ISI   +    +L    
Sbjct: 515 TKLRNLYEPLLHRTLTWRKGVISIAVLLFIGSILLFQR 552



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 58/164 (35%), Gaps = 12/164 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + I + + +         L   + + L +   LG   +FGI  NL ++ A+    G 
Sbjct: 346 IEGALIVIFVLVLFLGNLRAGLIVASAIPLSLLFALGMMRIFGISANLMSLGAI--DFGL 403

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM----AAFISVLPMAV 788
            V+  V+V +     +         +  +D+ + +   +   ++        +  LP+  
Sbjct: 404 IVDGAVIVVE---ATLHHLGVRQLTQKEMDEEVYKASSKIRKSAAFGEVIILLVYLPILT 460

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G     F   A  +AF I+ A   S+     +  +      K
Sbjct: 461 LTGIEGKMFAPMAKTVAFAILGALILSMTYIPMMCAWFLPKNPK 504



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 6/129 (4%)

Query: 685  WIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
            +  F+ W  ++   + + L     +   AL G+ F+++A    + L G +V + +V+   
Sbjct: 881  FFTFRSWALSIIIFSAIPLSAMGGVAALALRGMPFSISAGIGFIALFGVAVLNGIVLLST 940

Query: 744  MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIP 800
              + ++    +  +  +I  S+ E L   + T+  A +  LPMA+    G  V    A  
Sbjct: 941  Y-QQLEKEGITNPYERVIKGSL-ERLRPILMTATVASLGFLPMALSTGAGAEVQKPLATV 998

Query: 801  MAFGIVVAA 809
            +  G+V A 
Sbjct: 999  VIGGLVSAT 1007


>gi|257462581|ref|ZP_05626991.1| protein translocase subunit secD [Fusobacterium sp. D12]
          Length = 406

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 134/389 (34%), Positives = 221/389 (56%), Gaps = 22/389 (5%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +         +   A+ + +E++ +RI+ +G++ES++Q  G +R++I+LPG  +    
Sbjct: 35  VVLEAVPEPGQSLDKDAMGRLIEVLDRRINGLGVAESSVQMAGDNRVIIELPGVDNTEDA 94

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            +++G TA + F     +                         +  ++G  L  A  ++ 
Sbjct: 95  VKMVGKTALLEFKLKQED---------------------GSLGETLLTGGALKKADVSY- 132

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +P +       GAR F ++TR+N+G+ LA+ LDG V TAPVIN  IPSG   I+GN
Sbjct: 133 DNLGRPQIQFEMTPEGAREFAKITRENVGRQLAITLDGEVQTAPVINGEIPSGSGVITGN 192

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           +T+E A   A +L AG+LP+K  I E R VGA LG +SI +   A +  +VLI LFMI+ 
Sbjct: 193 YTVEEAKATATLLNAGALPVKAEIAEIRTVGASLGDESIAQSKQAGMLAIVLIWLFMILF 252

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G+VAD ++     +T  +L+ + ATLTLP IAG++L  G+AVD+N+++ ERI+EE 
Sbjct: 253 YRLPGIVADIALVFFGFITFGVLNFIDATLTLPGIAGLILSAGMAVDANVIIFERIKEEL 312

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           +   ++  +++ GF++ +  IFDSNIT LI T++LF FG G V+GFA+T+ +  L SMFT
Sbjct: 313 QFGNTIRNAINSGFNKGFVAIFDSNITTLIITIILFTFGTGPVKGFAVTLTIGTLGSMFT 372

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           AI+I + +++  +         +  +   
Sbjct: 373 AITITKVLLLNFVEIFGFTKPSLFGVKGK 401



 Score =  106 bits (263), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 73/168 (43%), Gaps = 4/168 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  +  E I +     +++ + + +++ + ++    + A   L+     T G        
Sbjct: 223 GASLGDESIAQSKQAGMLAIVLIWLFMILFYRLP-GIVADIALVFFGFITFGVLNFIDAT 281

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++   G +V+  V++++R+++ ++      + R+ I+   N+       +++
Sbjct: 282 LTLPGIAGLILSAGMAVDANVIIFERIKEELQF---GNTIRNAINSGFNKGFVAIFDSNI 338

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              I  + +  +G   +  FA+ +  G + +  ++I I   +LL   +
Sbjct: 339 TTLIITIILFTFGTGPVKGFAVTLTIGTLGSMFTAITITKVLLLNFVE 386



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQN 96
                LGLDL+GG ++VLE   +         +    + L   +   G+   S++    N
Sbjct: 20  SKPTKLGLDLKGGVYVVLEAVPEPGQSLDKDAMGRLIEVLDRRINGLGVAESSVQMAGDN 79

Query: 97  KITLSFADSRFKENIADKVTLFLQGVN 123
           ++ +        E+    V        
Sbjct: 80  RVIIELPGVDNTEDAVKMVGKTALLEF 106


>gi|145589860|ref|YP_001156457.1| CzcA family heavy metal efflux protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145048266|gb|ABP34893.1| heavy metal efflux pump, CzcA family [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1042

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/619 (11%), Positives = 168/619 (27%), Gaps = 46/619 (7%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQ 71
            +   I L++   +      +D FP   P  ++ + L + G +         + V   + 
Sbjct: 16  VLAMAIALVLFGIHAWMTLPIDAFPDISP-TQVKIILKIPGMT--------PEEVEQRVV 66

Query: 72  MYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPK 131
              +     + K+ I     +     IT+ F D         +++  L      L     
Sbjct: 67  RPIEIEMLSIPKKRIVRSVSKYGIADITIDFDDGTDIYWARQQISERLNAFTKDLPPGAT 126

Query: 132 KNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILI 191
             L   TT      + +       +          IR    ++       +       ++
Sbjct: 127 GGLAPITTPLSEIYMFTLEGEGFSLRDKRTVLDWTIR---PELRTIPGVAEVNVLGGEIL 183

Query: 192 QLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISG 251
                 DPSRL     T A +    +  N++                 +  V+   ++  
Sbjct: 184 TYEVIPDPSRLAARGITMADLRKAVMTNNSNDGAGRIDQGEETLVVRVEGAVKKLDDV-- 241

Query: 252 IHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQA 311
                                     G     +                         + 
Sbjct: 242 -----------------KKIQIPKTNGGSVMLDEVATVHLGSATRYGAVTKDGKGEAVEG 284

Query: 312 IPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAG 371
           +  G    +    +++       +                      +             
Sbjct: 285 LVLGLRGANARLLVDSVEQKLVEIAPRLPKGMTVNTFYNRGELVSRAAGTVTKALLEATV 344

Query: 372 LVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSN 431
           LV I L++ +   +  LV    + L+++ T  L+   G T  L S+ G+ + IG+ VD+ 
Sbjct: 345 LVCITLYLFLGGYRAALVVAAVLPLSILSTFILMKAFGLTANLMSLGGLAIAIGMLVDAA 404

Query: 432 ILVNERIREENRKNQSVF-----CSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGG 483
           ++V E +        +         + +        +        +  + L       G 
Sbjct: 405 VVVVENVETAFADPNTSKALSKTEIISIATHEVVKPMVAGVFIIAVVFLPLLSLEGLEGK 464

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRY------KKMKSIDINPLSRFFLIPDC 537
                A+T+ +++  S+  A +++ A+  F++        K M+ I    +     +   
Sbjct: 465 LFSPVALTIVMALASSLLIAFTVIPALASFVLERKADEETKFMRKISEKYVEWRNQVWGN 524

Query: 538 IAIQFM-RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
               +       GV + +   +    +      +  +  +    + +  +  +D  V + 
Sbjct: 525 TKWLYRASGIGLGVMVILYMIVGKTFMPTLDEGDILVQLQKLPSISLNESLIIDSQVEQL 584

Query: 597 NLESLQIGDISFQNFDGEK 615
            L+ +            + 
Sbjct: 585 FLKEVPEIKSIVARAGSDD 603



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 11/156 (7%)

Query: 656 IVGPKISRELIRKGIVGVII--SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
           + G +   +      + ++I  +   +   + + F      G I   I       G  AL
Sbjct: 845 VWGGQFENQQRAAARLAIVIPIALGLIFAILMVTFGSAIQAGIIFLNI-PFALVGGVVAL 903

Query: 714 F--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGR 771
              G   ++ A    + L+G +V + VV+     + +       S  D+I       L  
Sbjct: 904 TITGQYLSVPASVGFIALLGIAVLNGVVMVTHFNERL---VKGDSMSDVIHFGTGRRLRP 960

Query: 772 SVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            + T++   + ++P+      G  +    AI +  G
Sbjct: 961 VLMTAVITALGMIPLLFATGPGSEIQRPLAIVVIGG 996


>gi|226226720|ref|YP_002760826.1| cation efflux system protein [Gemmatimonas aurantiaca T-27]
 gi|226089911|dbj|BAH38356.1| cation efflux system protein [Gemmatimonas aurantiaca T-27]
          Length = 1080

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/679 (10%), Positives = 171/679 (25%), Gaps = 55/679 (8%)

Query: 9   ILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE----DD 64
            L   +  + L I     L Q+ LD  P                   ++++ D       
Sbjct: 13  ALVVGVLTLCLAIGGVYALRQTPLDALPDLSD-------------VQVIVQADYNEQAPR 59

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V   +          +              + + + F D         +V  +L G+  
Sbjct: 60  IVEDQVTYPIATEMLKVPGARTVRGYSFFGVSFVYVIFEDGTDLYWARSRVLEYLNGIRG 119

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           KL      +L    T                     E            +       +  
Sbjct: 120 KLPASVAPSLGPDATGLGWVFQY-ALEDTTGRLSLPELRTLQDWSLRYALTAVPGVAEVA 178

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                  Q   + +P++L        ++       N+     +  +            ++
Sbjct: 179 SVGGFEKQYQVDLEPAKLLAFGIPVTRVMNAIQNANSDVGAMVMELSEREYMVRGLGYLK 238

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
              +I                    V +     G              P        +  
Sbjct: 239 GIPDIEN------------------VVVGATASGTPVRVAELGRVTIGPAVRRGITDLDG 280

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                  I   +   +   TI+        ++       +             +    + 
Sbjct: 281 RGDAVGGIVVMRFGENALETIDRVKARLVEVQGSLPAGVVVRPVYDRSTLIKEAIGTVRS 340

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
           T    A +V ++  + +L+ +  LVA  ++ ++V++    L        + S+ GI + I
Sbjct: 341 TLIEEAIIVALICIVFLLHARSALVAVVTLPISVVIAFIGLRAFDIGADIMSLGGIAIAI 400

Query: 425 GLAVDSNILVNERIREENRK---------------NQSVFCSLDMGFSRAYSTIFDSNIT 469
           G  +D+ I++ E + +   +                +     +         ++F S + 
Sbjct: 401 GEMIDAAIVMVENMHKHLERRAAPGATHMDTALLSRRERLEVVLDSAREVGPSLFYSLLI 460

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             ++ + +F      G   +  A+T   ++  +   ++++V  +M   IR +  +     
Sbjct: 461 ITVSFIPVFTLEGQEGRLFKPLALTKTFAMAAASLLSVTLVPVLMGLFIRGRIAREQHNP 520

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLA 585
                  +   +    +R R+  +  S +  I +                +G +      
Sbjct: 521 LSRAMIRVYTPVLAWALRHRWGVIVCSTVMFILTWIPFQRIGSEFMPPLDEGSVLFMPTT 580

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              + ++  R  L         F           R       +        ++ K     
Sbjct: 581 LPGISVARARELLRQQDAILRGFPEVASVWGKAGRANTATDPAGLDMAETTIMLKPRNAW 640

Query: 646 VPLSTIQNTEIVGPKISRE 664
               T +         ++ 
Sbjct: 641 REGLTYEQLIAQMDSATKM 659



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 65/171 (38%), Gaps = 19/171 (11%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ I ++  +  R     AL A+ TL + +         F I  ++ ++  +   IG
Sbjct: 346 AIIVALICIVFLLHAR----SALVAVVTLPISVVIAFIGLRAFDIGADIMSLGGIAIAIG 401

Query: 732 YSVNDKVVVYDRMRKNMKLYT------------TSISFRDLIDKSINETLGRSVYTSMAA 779
             ++  +V+ + M K+++               +     +++  S  E      Y+ +  
Sbjct: 402 EMIDAAIVMVENMHKHLERRAAPGATHMDTALLSRRERLEVVLDSAREVGPSLFYSLLII 461

Query: 780 FISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +S +P+    G    +    A+   F +  A+  S+ +   ++      R
Sbjct: 462 TVSFIPVFTLEGQEGRLFKPLALTKTFAMAAASLLSVTLVPVLMGLFIRGR 512


>gi|103485965|ref|YP_615526.1| acriflavin resistance protein [Sphingopyxis alaskensis RB2256]
 gi|98976042|gb|ABF52193.1| acriflavin resistance protein [Sphingopyxis alaskensis RB2256]
          Length = 1138

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/489 (10%), Positives = 135/489 (27%), Gaps = 26/489 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    +     +         + +  +   + FA     +   + V   +  +
Sbjct: 59  PTELETQVTQRVEAAVRGVSGVDEMSSYVNEGSSITNVQFAIGTPIDRAYNDVNQAISQI 118

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S L     +  +V        I         +     + S  +      ++       Q
Sbjct: 119 RSDLPDGILEPQVVRVDIAGGPITYFAVEATDMTLE--QLSWFVDNTVAKELLSIPGMSQ 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              S  +  ++    DP+R++    T ++++      N +  G    +     +      
Sbjct: 177 VRRSGGVDREIRVILDPARMQSYGLTASQVNQQLRQVNVNAAGGRTEIAGSEQAVRVLGN 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                ++    +                         R         +    A   +   
Sbjct: 237 AGSAFQLGETRIAI--------------------GNGRTIRLADVAKVTDGYAEQRNLAK 276

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +    +           S     +        ++  +  +   I+  R         S  
Sbjct: 277 IGGRQVLSFSIEKAKGASDVTVHDETMKKLEQIKKANPKVDFTILFTRTEYTKEQYRSSM 336

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                     V++V  + +   +  L++  +I L+ I T   + ++G +L   S+  + L
Sbjct: 337 LAMIEGAVLAVVVVF-LFLRDWRATLISALAIPLSAIPTFWFMEMMGFSLNGLSLLALSL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCS---LDMGFSRAYSTIFDSNITALIATVVLFF 479
             G+ VD  I+  E I    R  ++ + +          A      S +   +   ++  
Sbjct: 396 VAGVLVDDAIVEIENIVRHMRMGKTAYQASIDAADEIGLAVVATTMSIVAVFLPVALMPG 455

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
             G     F +T+  ++L+S+  A  I   +  + +  +  +     P    +       
Sbjct: 456 VSGQFFIQFGMTVVFAVLMSLAVARMITPMIAAYFLSAQGEQDHANGPWIDRYERLLSWT 515

Query: 540 IQFMRARFW 548
           +   + +  
Sbjct: 516 LDSSKQKVV 524



 Score = 62.0 bits (148), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/241 (9%), Positives = 80/241 (33%), Gaps = 7/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
              +  +  G    +     +   + +       +      + +    +       I+   
Sbjct: 874  KAVAEIGFGAGPTELRRYNQTRRIVIGADLAPGLVTGDAQKKIDALPSIKTMPQGIRKVV 933

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLI-YIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                K   E++   ++ V+   + +    + +  ++   L  +++L+L     L    + 
Sbjct: 934  QGDAKWQAEMLTNFMIAVVSGLLLVFATLVLLYRRFLSPLVNMSSLLLAPLGGLLGLWIT 993

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G+E ++     +L L+G    + +++ D   + M      I     +  +  +     V 
Sbjct: 994  GMEVSMPVFIGLLMLLGIVAKNSILLVDFAIEEM---DKGIGKTAALIDAGRKRAQPIVM 1050

Query: 775  TSMAAFISVL--PMAVWGGSVIG-SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            T++A    ++   +++ G         + +  G++++   ++ I             +  
Sbjct: 1051 TTVAMVAGMIPTAISLSGDGAWRAPMGVVVIGGLILSTVLTLLIVPAGFSLADSIEKRLG 1110

Query: 832  R 832
            R
Sbjct: 1111 R 1111



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 53/139 (38%), Gaps = 6/139 (4%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             W   L +   + L    T  F  + G   N  ++ A+  + G  V+D +V  + +   
Sbjct: 355 RDWRATLISALAIPLSAIPTFWFMEMMGFSLNGLSLLALSLVAGVLVDDAIVEIENI--- 411

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFG 804
           ++      +       + +E     V T+M+     LP+A+  G        F + + F 
Sbjct: 412 VRHMRMGKTAYQASIDAADEIGLAVVATTMSIVAVFLPVALMPGVSGQFFIQFGMTVVFA 471

Query: 805 IVVAASSSIFIAAPILLFI 823
           ++++ + +  I   I  + 
Sbjct: 472 VLMSLAVARMITPMIAAYF 490


>gi|294776920|ref|ZP_06742381.1| putative membrane protein [Bacteroides vulgatus PC510]
 gi|294449168|gb|EFG17707.1| putative membrane protein [Bacteroides vulgatus PC510]
          Length = 1058

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 64/594 (10%), Positives = 167/594 (28%), Gaps = 49/594 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N   L     ++  + L +     +P   +   PS         GL         +  
Sbjct: 1   MSNPRNLSSFTLIVTFVCLSLIGVVLVPLLPVKLAPSRTLP-----GLT----VSFSMPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +    +   +    + + + +K       +       I+L        +    +V+  ++
Sbjct: 52  NSSRVIEAEVTSKLEAMMARVKGIRKVNSTSDNGSGSISLELDKHADIDVTRFEVSTIIR 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L        + T    + +            ++ I             +G  +  
Sbjct: 112 QTWPQLPEGVSYPQISTRRSDDKASRPFITYTLNAPANPILIQQYAEENIKPVLGQLKGI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +    ++   E D  +L +L  T   +          +   +  +    +     
Sbjct: 172 YKVELNGATPMEWLLEYDSDQLSRLGITLQAVQRAINRHYEKEFLGICSIEKGAEGR--- 228

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                        +     + + +       I                 +          
Sbjct: 229 -----------EWIRLVRTSTEKEMEFEPGAIQLQAEDGTMVTLDKLIKVRHVEERPQSY 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + +   +          L   L+    P     +             
Sbjct: 278 YRINGLNSVYLYITAEETANQLNLSGEVKHLMGELQQKMPPGYEVHISYDATEYIQKELD 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   ++L+ + +I    ++  +   S+ +N+ + + L    G  + L S+AGI
Sbjct: 338 KIYFRTGLTVLILLLFVALITRNLRYLFLIVTSLAVNISVAVILYYAFGLEMQLYSLAGI 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + + L +D+ I++ + I             L     +A+ ++  + +T + A V++FF 
Sbjct: 398 TISLNLVIDNTIVMTDHI-------------LHRRNLKAFVSVLAATLTTIGALVIIFFL 444

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----------MKSIDINP 527
                  ++ FA  + +++ +S+F A+  V +M+  I   KK            +     
Sbjct: 445 DEKIRLNLQDFAAVVIINLAVSLFVALFFVPSMIDKIGLEKKKRRKRRRFLLRPTFMKRL 504

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              F      +     R R     + +L     + +L       G   +   ++
Sbjct: 505 TVYFTRFYQGVIYYLCRFRVIACLLLLLGFGLPVFMLPEKMEGEGKWVEYYNKV 558



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 77/250 (30%), Gaps = 8/250 (3%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V     ++    +    +      S Q    E               ++     + K   
Sbjct: 812  VNIPFFINGRSYKLADFATVQKGQSPQKVAKENQQYRLCLQYEYIGSSEQGKKLLKKDLE 871

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRF-KWYFALGAITTL 700
                 L      E      S          +++  IA++ +   I F      L  I  +
Sbjct: 872  EFNKILPMGYTAENEQDYWSWNKKDNKQYALLLIVIAIIFFTTAILFNSLKQPLAIIFVI 931

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
             +        F LFG+ F+    A+ + L G +VN  + + +      K Y   +  R  
Sbjct: 932  PISYIGVFLTFYLFGLNFDQGGFASFVLLCGITVNASIYILNEYNAIRKRYPLLLPVR-A 990

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS---IFIAA 817
              K+ N  +     T ++  +  +P  V  G  +  F  P+A G +     S   IF+  
Sbjct: 991  FTKAWNSKILPIFLTVVSTILGFIPFMVGDGKEV--FWFPLAAGTIGGLVMSILGIFLFL 1048

Query: 818  PILLFIYDWR 827
            PI       R
Sbjct: 1049 PIFSLKKQKR 1058



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 90/250 (36%), Gaps = 24/250 (9%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G IQL       V L  +       +     ++       +L     +  + +  +  ++
Sbjct: 247 GAIQLQAEDGTMVTLDKLIKVRHVEERPQSYYRINGLNSVYLYITAEETANQLNLSGEVK 306

Query: 637 MVKKKITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            +  ++ + +P    +  +      I +EL +      +   I +L    I     +   
Sbjct: 307 HLMGELQQKMPPGYEVHISYDATEYIQKELDKIYFRTGLTVLILLLFVALITRNLRYLFL 366

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTT 753
            +T+L ++I+  +  +  FG+E  L ++A +   +   +++ +V+ D +  R+N+K    
Sbjct: 367 IVTSLAVNISVAVILYYAFGLEMQLYSLAGITISLNLVIDNTIVMTDHILHRRNLK---- 422

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
                              +  ++    +++ +      +   +  FA  +   + V+  
Sbjct: 423 --------------AFVSVLAATLTTIGALVIIFFLDEKIRLNLQDFAAVVIINLAVSLF 468

Query: 811 SSIFIAAPIL 820
            ++F    ++
Sbjct: 469 VALFFVPSMI 478


>gi|218682029|ref|ZP_03529630.1| putative multidrug efflux protein, Acr/RND family [Rhizobium etli
           CIAT 894]
          Length = 355

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 30/376 (7%), Positives = 78/376 (20%), Gaps = 34/376 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 +L  +   +G +        Q  + ++P+ +P               + +    
Sbjct: 9   RPVLANVLALVFLLVGAVALF-----QLPVAQYPNVVPPT-------------VQVTTRF 50

Query: 63  DDFVNGFLQMYSD-ELRSFLKKE-GIGVFSMRQIQN---KITLSFADSRFKENIADKVTL 117
                  L       +   +     +         +    + ++FA     +     V  
Sbjct: 51  PGASAQTLVDTVALPIEQQVNGVQDMLYMQSTSASDGTYSLIVTFAIGTDPDQAQVLVQN 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +    S L    +   + T  +    +             ++  S   +    +++   
Sbjct: 111 RVAIAMSSLPEAVQLQGVTTQKKSTAILGFVSLTSPDSRYDSLFLSNYAVINLQNELARL 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +    DP+ L+    T   +       +        G+  +    
Sbjct: 171 PGVGNVTVFGAGQYAMRIWMDPNLLQARGLTPQDVVNVVQQQSQEVTAGQIGIPPVPKGQ 230

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             QY +     ++               ++ +V       G R         +       
Sbjct: 231 VFQYTLNVNGRLNDAA-----------DYENIVVKVESGQGGRITRVRDIGRVELGAQTY 279

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                               + +     +      A L     P     +          
Sbjct: 280 SQSFTQNGRPAAGIGIFQLPEANAIAVEQAVNAKMAELSKNFPPGLEYHLPFDTTKFVKA 339

Query: 358 SDSIYKGTCAIVAGLV 373
           S      T      LV
Sbjct: 340 SIDEVYVTLIEAGVLV 355


>gi|47568554|ref|ZP_00239253.1| acriflavin resistance plasma membrane protein [Bacillus cereus
           G9241]
 gi|47554796|gb|EAL13148.1| acriflavin resistance plasma membrane protein [Bacillus cereus
           G9241]
          Length = 1038

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 194/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDISLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++      +       V  ++   M       +      K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASGPGSQNAGASTQVPQMNPAAMNGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRVLAWALNHKIITSSIAILLLVGSLALVPVIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYNNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|116624561|ref|YP_826717.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116227723|gb|ABJ86432.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1031

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 75/594 (12%), Positives = 163/594 (27%), Gaps = 40/594 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+   ++ +   +  +G+ +AL        +  FP       I +G+D     + V  +D
Sbjct: 26  RHGKPIIFVILTLVAVGVYLAL-----TIPVAVFPDTNFPR-IVVGID-----NGVFPID 74

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           +       +    +E  + +           +   ++ L F+         + V   +  
Sbjct: 75  QMLVT---VTRPIEEAVNSVPGLDHLWSITSRGTAEVDLFFSWKSDMYRTLELVNAAMAR 131

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S L     K  +   T     ++      D +     +           ++       
Sbjct: 132 VQSTLPPTA-KITVNRLTFAAFPVMGYSLTSDTISQD--KLWETANYDLKPRLNRQTGVS 188

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
             +     + +     DP++L Q   T   +                         GN  
Sbjct: 189 SVVLQGGQVPEFEIRPDPAKLVQTGTTIPNILDAI-------------------GRGNMI 229

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                +E +   +     +      +    I                 +   +  V    
Sbjct: 230 DSPGLIEANHQLVLSLVTSQARTPAEIGNIIIKTTPAGAPLRIGDVAAVSPSVMPVYTVV 289

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                         +   +              +R                     S   
Sbjct: 290 TANGKPAVLLNIYRQPDSNTVVVANAVHAEIDRIRKELPKGIDLRPFYDQSEIVNASIES 349

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +    I   L  +++ + +      LVA   I   + +T  +L  L  +  L ++ G+ 
Sbjct: 350 VRDAILIGLILASLIMVLFLRDWGTSLVAGLVIPATIAITFIILRALDQSFNLMTLGGLA 409

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF- 480
             +GL +D  I+V E I       QS   ++        + +  S IT ++  V L    
Sbjct: 410 AAVGLVIDDAIVVVENIVMHRDSGQSRADAIRTAIREIRAPLLGSTITPIVVFVPLISIT 469

Query: 481 --GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G   R  A+T+G+++L S+  A++    +  ++      +           +     
Sbjct: 470 GVTGVFFRALAVTVGVALLTSLALALTWTPTLSHYL-LRGSGRRGHDEVSRGRLMRIYER 528

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            ++F       +    L  I    L +TH  +  +         V    P   S
Sbjct: 529 TLRFTLEHPIALIFFALLLIGGSYLCYTHTGSDLLPAMDEGGFIVDYIMPAGSS 582



 Score = 79.7 bits (194), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 26/217 (11%), Positives = 87/217 (40%), Gaps = 7/217 (3%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
            E            +++     +  V+K + E+   + I+       +  ++  +  +  +
Sbjct: 817  ENLQRNVQVTARFENMNLGDGMAKVQKAVAELNMPADIRVQYGGQFEEQQKSFKDLVFVL 876

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            +++ + + + +   F  +   +  I++ +L          + G+ FN+++   ++ +IG 
Sbjct: 877  LLAIVLVFMVLLFEFGNFAAPVAVISSALLSTCGVFLALLITGVTFNISSFMGLIMVIGI 936

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
               + +++ D    + K         + + ++    L   + T++A    ++P+A+    
Sbjct: 937  VAKNGILLLD---ADQKFRAEGFGAEEAMIRAGERRLRPIMMTALATVAGMIPLALALGA 993

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            G  ++   AI +  GI+ +   S+ +   +  ++   
Sbjct: 994  GSQMLQPLAIAVIGGILASMVLSLVVTPAVHYYLGGR 1030



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 5/226 (2%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
              A  P+ +  V +   S+                L   +    ++V     +     +
Sbjct: 263 TTPAGAPLRIGDVAAVSPSVMPVYTVVTANGKPAVLLNIYRQPDSNTVVVANAVHAEIDR 322

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALGAITTL 700
           I + +P            +I    I      ++I  I   LI +     W  +L A   +
Sbjct: 323 IRKELPKGIDLRPFYDQSEIVNASIESVRDAILIGLILASLIMVLFLRDWGTSLVAGLVI 382

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
              I  T          FNL  +  +   +G  ++D +VV + +   +    +  S  D 
Sbjct: 383 PATIAITFIILRALDQSFNLMTLGGLAAAVGLVIDDAIVVVENI---VMHRDSGQSRADA 439

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF-AIPMAFGI 805
           I  +I E     + +++   +  +P+    G     F A+ +  G+
Sbjct: 440 IRTAIREIRAPLLGSTITPIVVFVPLISITGVTGVFFRALAVTVGV 485


>gi|332703794|ref|ZP_08423882.1| heavy metal efflux pump, CzcA family [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553943|gb|EGJ50987.1| heavy metal efflux pump, CzcA family [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1070

 Score =  122 bits (304), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 69/598 (11%), Positives = 154/598 (25%), Gaps = 37/598 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
               +    L +A          D  P       I          +        D +   
Sbjct: 14  FIVFLFVGALALAGWWSFRAMPKDALPDLSDTQVI---------VYTTWMGRSPDLIEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +            +  +         + + + F +         ++  +L  +  +L   
Sbjct: 65  ITYPIVTALLSAPRVTVVRGVSDFGFSYVYVLFEEGTDIYWARSRILEYLSQLRGRLPAG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            +  L    T              +      +           Q+   E   +       
Sbjct: 125 VEPALGPDATGVGWVFQY-ALVDAENRYDLAQLRTIQDWYLRYQLASVEGVAEVASLGGF 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     DP++L     +  ++       N    G +            +  V+   +I
Sbjct: 184 VRQYQVNLDPNKLAAYGLSIPQVIEAVRSANRETGGRVIEWGGTEFMVRGRGYVKSVEDI 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                                 +     G              P        +       
Sbjct: 244 ------------------AAAPVGVTMQGVPIRLRDVATVTTGPDMRRGFADLNGTGDAV 285

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   +   +    I       A +     P    +           +      +    
Sbjct: 286 GGIVVMRFGENAQAVIARVKERLAEIEPTLPPGVKILTTYVRSSLINRAIRSISESLIEE 345

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             ++ +++   + + +  LV   S+ L VI++   +  +     + ++ GI++ IG  VD
Sbjct: 346 LIIISLLMVFFLWHLRSALVPIISLPLAVIISFIPMYFMNMGTNIMALGGIIVAIGDMVD 405

Query: 430 SNILVNERIREENR------KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---F 480
           + I++ E   +         +       L          IF S I   ++ + +      
Sbjct: 406 AAIVMVENAVKRLTDAEASGQPHDRNEVLISSAKEVGPPIFASLIVMAVSFLPILTLEAQ 465

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G   +  A T   +I I+   AI+++ AM+   +R K +         R   +   +  
Sbjct: 466 EGRLFKPLAFTKNFAIAIAAILAITLIPAMLGLFVRGKLLPEAKHPINRRLIALYRPVVR 525

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
             ++ R+  VGI++L    S+ L    G  +      G    +    P         L
Sbjct: 526 AALKWRWLTVGIALLLFALSVPLFLRMGSEFMPPLNEGTIFYMPITMPGISETEAQRL 583



 Score = 43.5 bits (100), Expect = 0.15,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 68/212 (32%), Gaps = 8/212 (3%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R         D+     D                    + +    K+    +  +    
Sbjct: 259 LRDVATVTTGPDMRRGFADLNGTGDAVGGIVVMRFGENAQAVIARVKERLAEIEPTLPPG 318

Query: 654 TEIVGPKISRELIRKGIVGVIISAI---AMLIYIWIRFKW--YFALGAITTLILDITKTL 708
            +I+   +   LI + I  +  S I    ++  + + F W    AL  I +L L +  + 
Sbjct: 319 VKILTTYVRSSLINRAIRSISESLIEELIIISLLMVFFLWHLRSALVPIISLPLAVIISF 378

Query: 709 GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MRKNMKLYTTSISFR--DLIDKSI 765
                  +  N+ A+  ++  IG  V+  +V+ +  +++      +       +++  S 
Sbjct: 379 IPMYFMNMGTNIMALGGIIVAIGDMVDAAIVMVENAVKRLTDAEASGQPHDRNEVLISSA 438

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
            E       + +   +S LP+          F
Sbjct: 439 KEVGPPIFASLIVMAVSFLPILTLEAQEGRLF 470



 Score = 40.8 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 62/207 (29%), Gaps = 17/207 (8%)

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAIT 698
            K   E         T     +       K  + V +     +I++   F +   +   + 
Sbjct: 860  KAAVEGNIKMPAGYTIKWSGQYEFMERVKARLKVFVPLTLGIIFMLYYFTFGSVVETLLI 919

Query: 699  TLILDITKTLGFFAL-----FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM-------RK 746
             L +    T   F L      G   ++     ++ L G S    V +           R 
Sbjct: 920  MLSVPFALTGAIFLLSLDIGLGYNMSIAVWVGLIALAGVSAE-TVAIMLSYLDEAWKRRV 978

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
                       R+ I +     +   + T++A    ++P+ V    G  V+   A PM  
Sbjct: 979  EAGRMKDKSDLREAIMEGSVLRVRPMLMTALANIFGLMPVMVSTGTGADVMKRIAAPMVG 1038

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKN 830
            G+  A   ++ +   +     +   K 
Sbjct: 1039 GLASAVLLTLVLVPVLYSIWKEREFKR 1065


>gi|229176112|ref|ZP_04303605.1| Swarming motility protein swrC [Bacillus cereus MM3]
 gi|228607347|gb|EEK64676.1| Swarming motility protein swrC [Bacillus cereus MM3]
          Length = 1038

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/683 (10%), Positives = 198/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++            A+ +++E  +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKNESLAALTENVE--KNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKKLGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +          ++   M       +      K +
Sbjct: 231 GNITTMKALKELKIPAIPSSPSGQGSQNAGAGTQTPQMNPAAMNGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKDLEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANGYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 88.2 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 94/243 (38%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K + +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKDLEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 85/225 (37%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIQESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L      G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLFSGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|325924991|ref|ZP_08186416.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
 gi|325544608|gb|EGD15966.1| hydrophobe/amphiphile efflux-1 (HAE1) family transporter
           [Xanthomonas perforans 91-118]
          Length = 950

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/496 (10%), Positives = 125/496 (25%), Gaps = 25/496 (5%)

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
              +     +L  +  +  +V        ++++    D         +  +  + ++QI 
Sbjct: 2   QNKVSLATPRLPSEVTQQGVVVAKANAGFLMVAALRSDNPSIDRDALNDIVGSRVLEQIS 61

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +    +P +L+    +  ++       N        G     +
Sbjct: 62  RVPGVGSTNQFGA-EYAMNIWLNPEKLQGYNLSATQVLTAVRNQNVQFAAGSVGADPTPE 120

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                  V  +   S                +    I   +             +    +
Sbjct: 121 GISFTATVSAEGRFS-------------SPEQFENIILRTDNNGATVRLKDVARVTVGPS 167

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                                   +     E  G     L+              +    
Sbjct: 168 NYGFDTQYNGKPTGAFGIQLLPGANALNVSEAVGAKLDELQPTFPQGVTWFAPYESTTFV 227

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S      T      LV +V+ + +   +  ++    I + ++ T   + ++G T+   
Sbjct: 228 RISIEEVIHTLVEAIVLVFLVMLLFLQNFRATVIPTLVIPVALLGTFFGMYMIGFTINQL 287

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITAL 471
           ++  +VL IG+ VD  I+V E +     +      +         + A   I        
Sbjct: 288 TLFAMVLAIGIVVDDAIVVIENVERIMSEEHLEPKAATQKAMTQITGAVVAITVVLAAVF 347

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSID 524
           I + +     G   + FA+T+ +S+  S F A+S   A+            +    ++ D
Sbjct: 348 IPSSLQPGASGAIYKQFALTIAMSMGFSAFLALSFTPALCGAFLKSTHSTKKNWVYRTFD 407

Query: 525 INPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVL 584
                        +     R+  W +    L  +C        G     + +G     V 
Sbjct: 408 KYYDKLAHRYVGVVGHTLKRSPPWMIAFVALVVLCGFLFTRMPGSFLPEEDQGFAVAIVQ 467

Query: 585 ANRPVDLSVVRSNLES 600
                           
Sbjct: 468 LPPGATKIRTNEAFAQ 483



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 58/146 (39%), Gaps = 9/146 (6%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            +   W   +  +  + + +   + F  L G+  +L     ++T+IG +  + +++ +  
Sbjct: 783 ALYESWSIPVAVLLVVPIGVLGAITFSMLRGLPNDLYFKIGMITVIGLAAKNAILIVEFA 842

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPM 801
            +         + R+   ++ +      + TS A  + VLP+A+    G +   S    +
Sbjct: 843 VEQRAA---GKTLREATLEAAHLRFRPILMTSFAFILGVLPLAISTGAGANSRHSIGTGV 899

Query: 802 AFGIVVAA-SSSIFIAAPILLFIYDW 826
             G+V A     IFI  P+   +   
Sbjct: 900 IGGMVFATVLGVIFI--PLFFVVVRR 923



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/135 (13%), Positives = 52/135 (38%), Gaps = 9/135 (6%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           +   +     + + +  T     + G   N   + A++  IG  V+D +VV + +     
Sbjct: 256 FRATVIPTLVIPVALLGTFFGMYMIGFTINQLTLFAMVLAIGIVVDDAIVVIENV--ERI 313

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-----GGSVIGSFAIPMAFG 804
           +    +  +    K++ +  G  V  ++   ++ + +         G++   FA+ +A  
Sbjct: 314 MSEEHLEPKAATQKAMTQITGAVV--AITVVLAAVFIPSSLQPGASGAIYKQFALTIAMS 371

Query: 805 IVVAASSSIFIAAPI 819
           +  +A  ++     +
Sbjct: 372 MGFSAFLALSFTPAL 386



 Score = 42.8 bits (98), Expect = 0.23,   Method: Composition-based stats.
 Identities = 45/527 (8%), Positives = 138/527 (26%), Gaps = 52/527 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R+ PW++   +++   G L        +      P              +G +  ++++ 
Sbjct: 427 RSPPWMIAFVALVVLCGFL------FTRMPGSFLPEED-----------QGFAVAIVQL- 468

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKIT----------LSFADSRFKENI 111
                         ++R+ L+K+      ++                 +       ++  
Sbjct: 469 PPGATKIRTNEAFAQMRAVLEKQPAVEGMLQIAGFSFLGSGENVGMGFIRLKPWEERDVT 528

Query: 112 ADKVTLFLQGVNSKLNVD----PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEII 167
           A+++   L G    +            +    +     +  Q+         I     ++
Sbjct: 529 AEQLIQQLNGAFYGIKGAQIFVVNLPTVQGLGQFGGFDMWLQDRSGAGQEALINARNIVL 588

Query: 168 RQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFM 227
            +  ++             +   +QL    D  + + +    + +               
Sbjct: 589 GKAAEKQDTLVGVRPNGLENSPQLQLH--VDRVQAQSMGLDVSDIYSSIQ---------- 636

Query: 228 FGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTR 287
                L     N Y  E +++   +  +                 +       +   +  
Sbjct: 637 ---LMLAPVYVNDYFAEGRIKRVNMRADDQFRAGPESLRNFFTPSATATGADGQPAMIPL 693

Query: 288 DNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV 347
            N+ K         +      +     G     G+     + +   +          +  
Sbjct: 694 SNVVKAEWNYASPALNRYNGYSAVNIVGNPAPGGSSGQAMSAMEDIVNNDLPPGFGFDWS 753

Query: 348 EERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSL 407
                    G+ +      ++V   + +            ++    I +   +T ++L  
Sbjct: 754 GMSYQEIIAGNAATLLLALSVVVVFLCLAALYESWSIPVAVLLVVPIGVLGAITFSMLRG 813

Query: 408 LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
           L     L    G++  IGLA  + IL+ E   E+    +++  +        +  I  ++
Sbjct: 814 LPN--DLYFKIGMITVIGLAAKNAILIVEFAVEQRAAGKTLREATLEAAHLRFRPILMTS 871

Query: 468 ITALIATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMM 511
              ++  + L      G  +       +   ++ +    +  +    
Sbjct: 872 FAFILGVLPLAISTGAGANSRHSIGTGVIGGMVFATVLGVIFIPLFF 918


>gi|42784613|ref|NP_981860.1| AcrB/AcrD/AcrF family transporter [Bacillus cereus ATCC 10987]
 gi|42740545|gb|AAS44468.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus ATCC 10987]
          Length = 1039

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/684 (10%), Positives = 191/684 (27%), Gaps = 34/684 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHL-------NGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             +     +  + +       +G  +       +                 +      K 
Sbjct: 231 GNITTMKALKELKIPAVPSSASGQGSQNAGAGTQVPQMNPAAMNNGISTVTLDEIADIKE 290

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
           +                      A  +    +         L          I       
Sbjct: 291 VGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGA 349

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL 
Sbjct: 350 PIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLN 409

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENR---KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + ++  + + IG  VD +I+V E I        +       +       +  I  S I  
Sbjct: 410 IMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEMFIPIMSSTIVT 469

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           +   + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++ 
Sbjct: 470 IAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHH 529

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
             +   + +        A    +  S +  +  +  L    +          +  ++A  
Sbjct: 530 EEKPSKLANIYKHILAWALNHKIITSSIAILLLVGSLALVPIIGVSFLPSEEEKMIIATY 589

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             +      ++E +     + ++F   KN         G++             +     
Sbjct: 590 NPEPGQTLEDVEKIATK--AEKHFQDNKNVKTIQFSLGGENPMSPGQSNQAMFFVQYDND 647

Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671
               +  +    K  +++  KG  
Sbjct: 648 TKNFEKEKEQVVKDLQKMSGKGEW 671



 Score = 88.6 bits (217), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 99/290 (34%), Gaps = 10/290 (3%)

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
           +   V  S            T                V  +   D+  V          +
Sbjct: 243 KIPAVPSSASGQGSQNAGAGTQVPQMNPAAMNNGISTVTLDEIADIKEV-------GKAE 295

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
              +    E   +  ++    ++V     ++   K++ +      I +T   G  I + +
Sbjct: 296 SISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEIISTFDQGAPIEKSV 355

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                  +  +  A++I +         L ++ ++ L +   +       I  N+  + A
Sbjct: 356 ETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNIMTLGA 415

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   IG  V+D +VV + + + M L    +  +DLI ++  E     + +++      LP
Sbjct: 416 MTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEMFIPIMSSTIVTIAVFLP 475

Query: 786 MAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           + +     G +   FA+ + F ++ +   ++ I   +   ++   +   +
Sbjct: 476 LGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREK 525



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 791  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 850

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 851  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 909

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 910  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 966

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 967  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1011


>gi|301155640|emb|CBW15108.1| multidrug efflux system protein [Haemophilus parainfluenzae T3T1]
          Length = 1034

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/455 (12%), Positives = 139/455 (30%), Gaps = 26/455 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +  F+    +E  +          S     + +T+    +         V   +  V
Sbjct: 56  ANLIQAFVTSKIEEAVAQADNVDYMSSSSSPSTSTVTVKMKLNTDPNAALADVLAKVNSV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +   + ++T     I+      +++   A + +  I R    Q    E    
Sbjct: 116 RSELPSGIEDPTISSSTGGS-GIMYISFRSNKL--DASQVTDYIQRVVKPQFFTVEGVAS 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                     L    DP ++     +  ++       N           F+   +  +  
Sbjct: 173 VQIFGASEYALRVWLDPEKMAAQNLSATQVMSALSANNVQTAAGNDNGYFVTYKNKVETT 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   E+                     ++     G +        +I    +      V
Sbjct: 233 TKSVEELG--------------------NLIVTSNGDKLVRLRDIADIELNKSSDNSRAV 272

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +  +  +          L   ++        + +      A   S +  
Sbjct: 273 ANGADSVVLAINPTSSANPLTVAAKVRPLYDSIKNNLPDAIESDILYDRTIAINNSINEV 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T      +VL+V+ M +   +  L+   +I +++I  + LL     ++ L ++  ++L
Sbjct: 333 IKTIVEATIIVLVVITMFIGSFRAILIPVITIPISLIGVIMLLQSFDFSINLMTLLALIL 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            IGL VD  I+V E +    +  ++ F +  +G       +    I  +     +   G 
Sbjct: 393 AIGLVVDDAIVVLENVDRHIKLGETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGG 452

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G   + FA+T+  ++ IS   A+++   M   +
Sbjct: 453 ITGTLFKEFALTLAGAVFISGIVALTLSPMMTSKL 487



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 64/157 (40%), Gaps = 12/157 (7%)

Query: 674  IISAIAMLIYIWIRFK-WYFALGAITTLILDI------TKTLGFFALFGIEFNLTAVAAV 726
            +++ + + + + I+F+     +  + ++ L +          GF  + G   N+ +   +
Sbjct: 852  LLAVVIIFLVLAIQFESIRDPIVIMISVPLAVSGALLALNAFGFIGIAGTTLNIYSQVGL 911

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP- 785
            +TL+G      +++ +  ++         +  + I ++    L   + T+ A    ++P 
Sbjct: 912  ITLVGLITKHGILMCEVAKEE--QLNHGKTRVEAITEAAKVRLRPILMTTAAMIAGLVPL 969

Query: 786  MAVWGGSVIGSFAIPMAF--GIVVAASSSIFIAAPIL 820
            +   G   +  F+I +    G+ +    ++F+   I 
Sbjct: 970  LYATGAGAVSRFSIGIVIVAGLAIGTLFTLFVLPVIY 1006



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/261 (12%), Positives = 89/261 (34%), Gaps = 7/261 (2%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G + +    ++ V L  +     +    +        +   L        + +     + 
Sbjct: 240 GNLIVTSNGDKLVRLRDIADIELNKSSDNSRAVANGADSVVLAINPTSSANPLTVAAKVR 299

Query: 637 MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WIRFKWYFALG 695
            +   I   +P +   +            I + I  ++ + I +L+ I      +   L 
Sbjct: 300 PLYDSIKNNLPDAIESDILYDRTIAINNSINEVIKTIVEATIIVLVVITMFIGSFRAILI 359

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            + T+ + +   +     F    NL  + A++  IG  V+D +VV + +    +      
Sbjct: 360 PVITIPISLIGVIMLLQSFDFSINLMTLLALILAIGLVVDDAIVVLENV---DRHIKLGE 416

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSS 812
           +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++   +
Sbjct: 417 TPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGIVA 476

Query: 813 IFIAAPILLFIYDWRAKNARI 833
           + ++  +   +       +++
Sbjct: 477 LTLSPMMTSKLLKSNEAPSKL 497


>gi|237654690|ref|YP_002891004.1| heavy metal efflux pump, CzcA family [Thauera sp. MZ1T]
 gi|237625937|gb|ACR02627.1| heavy metal efflux pump, CzcA family [Thauera sp. MZ1T]
          Length = 1079

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/593 (11%), Positives = 167/593 (28%), Gaps = 44/593 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV+L ++    G + A+ +    + LD  P       I          +       
Sbjct: 35  RNVFLVLLATLFLIGGGVYAVKH----TPLDALPDLSDVQVI---------VYTDYPGQA 81

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          + +  +         + + + F D         +V  +L   
Sbjct: 82  PQVVEDQVTYPLTTSMLAVPRAKVVRGFSMFGASYVYVIFEDGTDIYWARSRVLEYLSTA 141

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L       +    T        +    D       +           Q+  ++   +
Sbjct: 142 ASRLPQGVAPQIGPDATGVGWVYQYAVLGKD---MSLADTRSLQDWYVRYQLTKAQGVSE 198

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +     DP RL     T   ++                         N+ +
Sbjct: 199 VASLGGFVREYQVTVDPLRLAGYGITLDAVTQAIRAS-------------------NRDV 239

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               VE++          +          +   E G              P        +
Sbjct: 240 GGRVVELAEKEYMVRGRGYLQSVQDIADIVLKAERGTPVRVGDVARVELVPAERRGIAEL 299

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    I       A +  G       +           +    
Sbjct: 300 NGEGEVASGIVMARFGQNALDVIANVKAKIAEITPGLPAGAEIVPVYDRSELIERAIGNL 359

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T    + +V  V  + +L+ +  LVA  ++ L ++     +  LG    + S+ GI +
Sbjct: 360 KWTLLEESLIVAAVCVIFLLHVRSALVAIITLPLGILFAFIAMRSLGLGSNIMSLGGIAI 419

Query: 423 GIGLAVDSNILVNERIREENRK------NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IG  VD+ I++ E   +   +       ++   ++ +        +F S +   ++ + 
Sbjct: 420 AIGAMVDAAIVMIENAHKHIERLPAGADQKARGAAIVLACKEVGPALFFSLLIITVSFLP 479

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   ++  +   ++++V  +M+F +R + +             
Sbjct: 480 VFALEGQEGRLFSPLAFTKTFAMAGAALLSVTLVPVLMLFFVRGRILPEAKNPVNRLLIW 539

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           +   I    +R +   + +++L    ++      G  +      G    + A 
Sbjct: 540 LYRPIIQGVLRFKVLTLVLAVLAMAATVVPARQIGSEFMPTLNEGTLFYMPAA 592



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 84/251 (33%), Gaps = 10/251 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V       + +V +    +   +   +   G              +  + ++ E+     
Sbjct: 278 VRVGDVARVELVPAERRGIAELNGEGEVASGIVMARFGQNALDVIANVKAKIAEITPGLP 337

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
                +     +E++   I           +I++A+ ++  + +R     AL AI TL L
Sbjct: 338 AGAEIVPVYDRSELIERAIGNLKWTLLEESLIVAAVCVIFLLHVR----SALVAIITLPL 393

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR---KNMKLYTTSISFRD 759
            I          G+  N+ ++  +   IG  V+  +V+ +      + +       +   
Sbjct: 394 GILFAFIAMRSLGLGSNIMSLGGIAIAIGAMVDAAIVMIENAHKHIERLPAGADQKARGA 453

Query: 760 LIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIA 816
            I  +  E      ++ +   +S LP+    G     F   A    F +  AA  S+ + 
Sbjct: 454 AIVLACKEVGPALFFSLLIITVSFLPVFALEGQEGRLFSPLAFTKTFAMAGAALLSVTLV 513

Query: 817 APILLFIYDWR 827
             ++LF    R
Sbjct: 514 PVLMLFFVRGR 524



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/226 (11%), Positives = 71/226 (31%), Gaps = 16/226 (7%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +     ++     V    +    E+        T     +       K  + V ++   +
Sbjct: 840  VYVDTREADLGAFVKRAQQAVAEEVAFPQGYYATWSGQFENMERAKEKMKIVVPVTLALI 899

Query: 681  LIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +++ F+     L  + ++   +   +      G + ++      + L G +    V+
Sbjct: 900  FVLLYLNFRRLTETLIVMLSVPFALVGGVWLMWWLGYQMSVAVAVGFIALAGVAAETGVI 959

Query: 740  VY-----------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            +             R R+              I +   E +   + T +A    +LP+  
Sbjct: 960  MLIYLDHAWKAVCAR-RQAEGRAAGIADLYAAIMEGAVERVRPKMMTVVAIMAGLLPIMW 1018

Query: 789  W---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                G  V+   A PM  G+V +   ++ +   +   +  W  + +
Sbjct: 1019 STGTGAEVMSRIAAPMVGGMVSSTLLTLAVIPALYALVKQWELRRS 1064


>gi|262066710|ref|ZP_06026322.1| export membrane protein SecD [Fusobacterium periodonticum ATCC
           33693]
 gi|291379509|gb|EFE87027.1| export membrane protein SecD [Fusobacterium periodonticum ATCC
           33693]
          Length = 411

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 137/369 (37%), Positives = 217/369 (58%), Gaps = 22/369 (5%)

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
           ++ + A+ + +E++ +R++ IG++ES+IQ+ G +R++++LPG Q+      L+G TA + 
Sbjct: 53  KIDNDAMNRLIEVLNRRVNGIGVAESSIQKAGDNRVIVELPGLQNAEDAINLIGKTALLE 112

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           F  +  + +                       +  ++G  L            +P +   
Sbjct: 113 FKIMNDDGT---------------------LGETLLTGSAL-QKAEVSYDNLGRPQISFE 150

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
               GA  F ++TR+NIG+ LA+ LDG V TAP IN  I  G   I+GN+T+E A   A 
Sbjct: 151 MTPDGAHVFAKITRENIGRQLAITLDGEVQTAPRINTEIAGGSGAITGNYTVEEATATAT 210

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
           +L AG+LPIK  +VE R VGA LG +SI +   A +  +VLI +FMIV Y   G++AD +
Sbjct: 211 LLNAGALPIKAEVVETRTVGATLGDESIAQSKNAGMVAIVLIWVFMIVFYRLPGIIADLA 270

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           I +   +T A L+ + ATLTLP IAG +L +G+AVD+N+++ ERI+EE R   S+  S+D
Sbjct: 271 IIIFGFITFACLNFIDATLTLPGIAGFILSLGMAVDANVIIFERIKEELRFGNSIRNSID 330

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            GF + +  IFDSN+T LI T +LF FG G ++GFA+T+ L  L SMFTAI++ + +++ 
Sbjct: 331 SGFGKGFVAIFDSNLTTLIITAILFVFGTGPIKGFAVTLALGTLASMFTAITVTKVLLLT 390

Query: 514 IIRYKKMKS 522
            +     +S
Sbjct: 391 FVNIFGFRS 399



 Score =  115 bits (288), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 27/166 (16%), Positives = 72/166 (43%), Gaps = 4/166 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  +  E I +     +++ + + +++ + ++    + A   +I+    T          
Sbjct: 230 GATLGDESIAQSKNAGMVAIVLIWVFMIVFYRLP-GIIADLAIIIFGFITFACLNFIDAT 288

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  +G +V+  V++++R+++ ++      S R+ ID    +       +++
Sbjct: 289 LTLPGIAGFILSLGMAVDANVIIFERIKEELRF---GNSIRNSIDSGFGKGFVAIFDSNL 345

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              I    + V+G   I  FA+ +A G + +  ++I +   +LL  
Sbjct: 346 TTLIITAILFVFGTGPIKGFAVTLALGTLASMFTAITVTKVLLLTF 391



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 23/131 (17%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV-----D 61
            ++L   I    +  ++                 K  I LGLDL+GG ++VLE       
Sbjct: 8   RLLLVIAIFIAAVYYSI-----------------KKPIKLGLDLKGGVYVVLEAVEDKNS 50

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQ 120
                N  +    + L   +   G+   S+++   N++ +     +  E+  + +     
Sbjct: 51  NIKIDNDAMNRLIEVLNRRVNGIGVAESSIQKAGDNRVIVELPGLQNAEDAINLIGKTAL 110

Query: 121 GVNSKLNVDPK 131
                +N D  
Sbjct: 111 LEFKIMNDDGT 121


>gi|289663269|ref|ZP_06484850.1| acriflavin resistance protein [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 1019

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 77/605 (12%), Positives = 175/605 (28%), Gaps = 37/605 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR++   +   +MI   G++  L     +         +                +    
Sbjct: 8   MRSSRLTLFAAAMILIGGIVAFLGFPSQEEPSVTVRDTL--------------VSVAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS-FADSRFKENIADKVTLFL 119
              + V   L    +E    L      V ++R     + L+ + D +    +  +V    
Sbjct: 54  MPSEQVENLLARPIEEQLRELAGIKRIVTTVRPGSAIVQLTAYDDVQDLPALWQRVRAKA 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L        +    +    + ++   +        E     +R+  +Q+     
Sbjct: 114 AEAGAQLPAGTLGPFV---DDDFGRVSVASIAVTAPGFSMSEMRG-PLRRMREQLYGLPG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q         ++    D +R+     T + +       N    G    V  L  +   
Sbjct: 170 VEQVKLFGLQDERVYVSFDRARMLASGLTPSSVMAQLRAQNVVGSGGQVAVSGLALTVAT 229

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +    ++ G+ L+   A                  GAR         +    A    
Sbjct: 230 SGEIRTPEQLRGVLLSVPGA---------------PAGGAREVTLGELAQVQVMPADPPQ 274

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +        +       S       A        A  LP+             +  +
Sbjct: 275 SAAVYQGQPAVVVSVSMQPGSNIADFGKALRAKLDDTARQLPVGFTQHVVSFQADVVERE 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                       ++++ + M+ L  + GL+    + L +  +L ++ +L   L   SIA 
Sbjct: 335 MGKMHHVMGETIVIVMAVVMLFLGWRTGLIVGAIVPLTIFASLIVMRVLDVELQTVSIAA 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I+L +GL VD+ I++ E I       +    +         + +  S++  ++A    FF
Sbjct: 395 IILALGLLVDNGIVIAEDIERRLVAGEERRQACIDAGRTLATPLLTSSLVIVLAFSPFFF 454

Query: 480 FGGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                    R  A  +G+++L S   +I++   + ++  +    K  D      +     
Sbjct: 455 GQTSTNEYLRSLATVLGVTLLGSWVLSITVTPLLCMYFAKVHATKDSDAAESRFYRGYRR 514

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            I         +   ++ + ++    L+           +   Q+ V      D      
Sbjct: 515 VIERVLQHKALFIGAMAAMLAVAITVLVSIPYDFLPKSDRLQFQMPVTLQAGSDARETLR 574

Query: 597 NLESL 601
            +  L
Sbjct: 575 TVSDL 579



 Score = 79.3 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 25/204 (12%), Positives = 73/204 (35%), Gaps = 6/204 (2%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            +    R+   +            I        + ++ L+      +      +L+++W  
Sbjct: 821  TEIVERLAAPIAALKLPPGYRVEIGGELEDSAEANQALLHYMPHALG---AILLLFVWQF 877

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              +      ++ +   +        + G  F   A   +L L G  VN+ V++ +R+   
Sbjct: 878  NSFRKLFIVLSAVPFVLIGAALALVITGYPFGFMATFGLLALAGIIVNNAVLLLERIEAE 937

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +      +  R+ +  +  + L   + T +   + ++P+ ++ G +    AI M  G+ +
Sbjct: 938  LAD---GLPCREAVVAAAVKRLRPIIMTKLTCIVGLVPLMLFAGPLWTGMAITMIGGLAL 994

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
                ++ +   +   ++  R +  
Sbjct: 995  GTLVTLGLIPILYDLLFGLRMRRG 1018



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/248 (12%), Positives = 83/248 (33%), Gaps = 13/248 (5%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V       + V+ ++                  +              + ++ +  ++ 
Sbjct: 256 EVTLGELAQVQVMPADPPQSAAVYQGQPAVVVSVSMQPGSNIADFGKALRAKLDDTARQL 315

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                        ++V  ++ +     G   ++I    +++++  R      +GAI  L 
Sbjct: 316 PVGFTQHVVSFQADVVEREMGKMHHVMGET-IVIVMAVVMLFLGWRTGLI--VGAIVPL- 371

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
             I  +L    +  +E    ++AA++  +G  V++ +V+ + +    +L       +  I
Sbjct: 372 -TIFASLIVMRVLDVELQTVSIAAIILALGLLVDNGIVIAEDI--ERRLVAGEERRQACI 428

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV----IGSFAIPMAFGIVVAASSSIFIAA 817
           D     TL   + TS    +       +G +     + S A  +   ++ +   SI +  
Sbjct: 429 DAG--RTLATPLLTSSLVIVLAFSPFFFGQTSTNEYLRSLATVLGVTLLGSWVLSITVTP 486

Query: 818 PILLFIYD 825
            + ++   
Sbjct: 487 LLCMYFAK 494


>gi|265752182|ref|ZP_06087975.1| drug efflux protein [Bacteroides sp. 3_1_33FAA]
 gi|263236974|gb|EEZ22444.1| drug efflux protein [Bacteroides sp. 3_1_33FAA]
          Length = 1058

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/594 (10%), Positives = 167/594 (28%), Gaps = 49/594 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N   L     ++  + L +     +P   +   PS         GL         +  
Sbjct: 1   MSNPRNLSSFTLIVTFVCLSLIGVVLVPLLPVKLAPSRTLP-----GLT----VSFSMPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
           +    +   +    + + + +K       +       I+L        +    +V+  ++
Sbjct: 52  NSSRVIEAEVTSKLEAMMARVKGIRKVNSTSDNGSGSISLELDKHADIDVTRFEVSAIIR 111

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
               +L        + T    + +            ++ I             +G  +  
Sbjct: 112 QTWPQLPEGVSYPQISTRRSDDKASRPFITYTLNAPANPILIQQYAEENIKPVLGQLKGI 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +   +    ++   E D  +L +L  T   +          +   +  +    +     
Sbjct: 172 YKVELNGATPMEWQLEYDSDQLSRLGITLQAVQRAINRHYEKEFLGICSIEKGAEGR--- 228

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                        +     + + +       I                 +          
Sbjct: 229 -----------EWIRLVRTSTEKEMEFEPGAIQLQAEDGTMVMLDKLIKVRHVEERPQSY 277

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          + +   +          L   L+    P     +             
Sbjct: 278 YRINGLNSVYLYITAEETANQLNLSGEVKHLMGELQQKMPPGYEVHISYDATEYIQKELD 337

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   ++L+ + +I    ++  +   S+ +N+ + + L    G  + L S+AGI
Sbjct: 338 KIYFRTGLTVLILLLFVALITRNLRYLFLIVASLVVNISVAVILYYTFGLEMQLYSLAGI 397

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            + + L +D+ I++ + I             L     +A+ ++  + +T + A V++FF 
Sbjct: 398 TISLNLVIDNTIVMTDHI-------------LHRRNLKAFVSVLAATLTTIGALVIIFFL 444

Query: 481 GGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK----------MKSIDINP 527
                  ++ FA  + +++ +S+F A+  V +M+  I   KK            +     
Sbjct: 445 DEKIRLNLQDFAAVVIINLAVSLFVALFFVPSMIDKIGLKKKKRRKRRRFLLRPTFMKRL 504

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
              F      +     R R     + +L     + +L       G   +   ++
Sbjct: 505 TVYFTRFYQGLIYYLCRFRVIACLLLLLGFGLPVFMLPEKMEGEGKWVEYYNKV 558



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 73/253 (28%), Gaps = 14/253 (5%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            V     ++    +    +      S Q    E               ++     + K   
Sbjct: 812  VNIPFFINGRSYKLADFATVQKGQSPQKVAKENQQYRLCLQYEYIGSSEQGKKLLKKDLE 871

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRF-KWYFALGAITTL 700
                 L      E      S          +++  IA++ +   I F      L  I  +
Sbjct: 872  EFNKVLPMGYTAENDQDYWSWNKKDNKQYALLLIVIAIIFFTTSILFNSLKQPLAIIFVI 931

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS---F 757
             +        F LFG+ F+    A+ + L G +VN  + + +                  
Sbjct: 932  PISYIGVFLTFYLFGLNFDQGGFASFVLLCGITVNASIYILN----EYNAIRKRYPLLLP 987

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS---IF 814
                 K+ N  +     T ++  +  +P  V  G    +F  P+A G +     S   IF
Sbjct: 988  ARAFTKAWNSKILPIFLTVVSTILGFIPFMV--GDGKEAFWFPLAAGTIGGLVMSILGIF 1045

Query: 815  IAAPILLFIYDWR 827
            +  PI       R
Sbjct: 1046 LFLPIFSLKKQKR 1058



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/250 (12%), Positives = 90/250 (36%), Gaps = 24/250 (9%)

Query: 577 GGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLE 636
           G IQL       V L  +       +     ++       +L     +  + +  +  ++
Sbjct: 247 GAIQLQAEDGTMVMLDKLIKVRHVEERPQSYYRINGLNSVYLYITAEETANQLNLSGEVK 306

Query: 637 MVKKKITEIVP-LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
            +  ++ + +P    +  +      I +EL +      +   I +L    I     +   
Sbjct: 307 HLMGELQQKMPPGYEVHISYDATEYIQKELDKIYFRTGLTVLILLLFVALITRNLRYLFL 366

Query: 696 AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTT 753
            + +L+++I+  +  +  FG+E  L ++A +   +   +++ +V+ D +  R+N+K    
Sbjct: 367 IVASLVVNISVAVILYYTFGLEMQLYSLAGITISLNLVIDNTIVMTDHILHRRNLK---- 422

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAAS 810
                              +  ++    +++ +      +   +  FA  +   + V+  
Sbjct: 423 --------------AFVSVLAATLTTIGALVIIFFLDEKIRLNLQDFAAVVIINLAVSLF 468

Query: 811 SSIFIAAPIL 820
            ++F    ++
Sbjct: 469 VALFFVPSMI 478


>gi|284035394|ref|YP_003385324.1| acriflavin resistance protein [Spirosoma linguale DSM 74]
 gi|283814687|gb|ADB36525.1| acriflavin resistance protein [Spirosoma linguale DSM 74]
          Length = 1075

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/528 (11%), Positives = 148/528 (28%), Gaps = 38/528 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--LEV 60
            +     +  ++  +GLL      L    +D FP+          LDL    ++V     
Sbjct: 6   RSALRKPISVVVAVLGLLFFSVMSLFTIPVDIFPN----------LDLP-TIYVVQPYGG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D ++GF+     +   ++           Q  + I LSF         A +V   + 
Sbjct: 55  MAPDQMDGFIATRYQDHFLYVSGIRDIDVKTIQGLSLIKLSFYPGTDMAQAAAEVANNVS 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + +        +V      + +               E       +           
Sbjct: 115 RAKAYMPEGTVPPQVVRFDASSVPVGQLVFESQS--RSLNEIQDYASARVRPMFSRIPGV 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +  + +P  +R    T  ++    +  N         +          
Sbjct: 173 SSPPPFGGNQRTVVIKVNPQLVRSYQLTPEEVIKSIISNNQPSPAGNIRI---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N   K  +  ++I          F      +     V +  
Sbjct: 223 ----------GDKALMTPVNSLVKRPEDFLNIPIRVGSGPTVFVRDIATVEDGADVTVSY 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            ++            K+  S    +         LRA          E         +  
Sbjct: 273 ALVNGRRAVYIPVVKKSDASTLDVVNNIRKALPELRAAVPEDVEISYEFDQSVYVTNALK 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  + A L  +++ + +   +  ++   +I ++++  + +L+L G T+ + +++G+
Sbjct: 333 SLVTEGILGAVLTGLMVLLFLRDWRSVIIVVVTIPISILSAVIMLNLCGQTINIMTLSGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVL 477
            L IG+ VD   +  E I +     +    ++             I  + +       V+
Sbjct: 393 ALAIGILVDQATVTIENIHQHLETGKPKAVAIWDACKEIVFPEFLILLAILAVFAPAFVM 452

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDI 525
                      ++++G +++ S   + + V  +  ++++   +     
Sbjct: 453 SGVPRSMFLPLSLSVGFAMIASFLLSQTFVPVLANWLLKSHPVHEAPT 500



 Score = 67.8 bits (163), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 30/226 (13%), Positives = 80/226 (35%), Gaps = 7/226 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S++ +        +      N LV +          T    + +       P   +    
Sbjct: 818  SDVATFSESTAPGEYDRAGPNRLVTITANLQKKDLGTARKAVEQAIKEAGEPPRGVLVEL 877

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                 +  + +     G++++ + + + +   +  +  +L  +  +   +   L      
Sbjct: 878  GGQTNLLTDTLSSLQTGLLVAIVIIFLLLAANYQSFKLSLVILAAIPAVVAGALLMLLAC 937

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            G   NL +   ++  +G SV + +++     +N++L       R  +  + N  +   + 
Sbjct: 938  GATLNLQSYMGLIMSVGVSVANAILMVTNA-ENLRLEI--GDTRRAVVLAANSRIRPILM 994

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            TS+A    ++PMA     GG  I      +  G++ +  +++ I  
Sbjct: 995  TSIAMIAGMVPMASGLGEGGDQIAPLGQAVIGGLIASTLAALLILP 1040


>gi|254250734|ref|ZP_04944053.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
 gi|124879868|gb|EAY67224.1| Cation/multidrug efflux pump [Burkholderia cenocepacia PC184]
          Length = 1099

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/551 (12%), Positives = 150/551 (27%), Gaps = 44/551 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G     P  L ++  D FP+                  +V   
Sbjct: 25  LRRPYTFVVLALLIFIAG-----PLALLRTPTDIFPNIDIPV-----------VSIVWTY 68

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 69  NGFSAEDMAKRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 128

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + D +     +           Q+   
Sbjct: 129 NAASILRILPPGTLPPNIITYNASTVPILQLGLSSDTLAEQ--QLYDLGNSFIRTQLATV 186

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + D   L+        +       N    G    +     + 
Sbjct: 187 QGAAVPLPFGGKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGTAKIGTHEYNV 246

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     D+    +G    +     ++    A  
Sbjct: 247 QMNGSTQTVAAL--------------------NDLPVKTIGGTVVYVRDVAHVRDGYAPQ 286

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S    I+    +   + AG          +        
Sbjct: 287 TNIVRVDGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGLPKALHIAPLDDQSVFVKA 346

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   +I L V+ +L  LS LG T+ + ++
Sbjct: 347 AVQGVVREALIAACLTALMILLFLGSWRATLIIAITIPLAVLTSLLALSALGQTINIMTL 406

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I         +  ++  G        F S ++  I  V +
Sbjct: 407 GGLALAVGILVDDATVAIENITHHLELGAPLEEAILTGSGEIAVPTFVSTLSICIVFVPM 466

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G         A  +  +++ S F + ++V  + + ++R K          +    +
Sbjct: 467 FLLTGVARYLFVPLAEAVIFAMIASYFFSRTLVPTLAMALMRAKGSGRPPRGVFAPLVHV 526

Query: 535 PDCIAIQFMRA 545
               A    R 
Sbjct: 527 ARFQAAFEHRF 537



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 58/152 (38%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    T+ L +  +L   +  G   N+  +  +   +G
Sbjct: 355 ALIAACLTALMILLFLGSWRATLIIAITIPLAVLTSLLALSALGQTINIMTLGGLALAVG 414

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +              + I     E    +  ++++  I  +PM +  G
Sbjct: 415 ILVDDATVAIENI---THHLELGAPLEEAILTGSGEIAVPTFVSTLSICIVFVPMFLLTG 471

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  ++ A  +S F +  ++  +
Sbjct: 472 VARYLF-VPLAEAVIFAMIASYFFSRTLVPTL 502



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 57/158 (36%), Gaps = 7/158 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + ++   + + + + F  W   L  +  L   +        +     ++ A+   +  IG
Sbjct: 922  LALAISLVYLLMVVNFQSWLDPLVIVGGLPASLAGIAWMLFVTRTTLSVPALTGTILCIG 981

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+ +               +        V T++A  I +LPMA+   
Sbjct: 982  IATANSILVVNAARELLAG---GEPPWQAALDAGFARFRPVVMTALAMLIGMLPMALGLG 1038

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             GG         +  G+  A  S++     +  F++ W
Sbjct: 1039 DGGEQNAPLGRAVIGGLACATMSTLLFVPVLFGFVHAW 1076


>gi|307726134|ref|YP_003909347.1| acriflavin resistance protein [Burkholderia sp. CCGE1003]
 gi|307586659|gb|ADN60056.1| acriflavin resistance protein [Burkholderia sp. CCGE1003]
          Length = 1058

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/636 (9%), Positives = 159/636 (25%), Gaps = 49/636 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++     +++  +I       A P  L  + +D  P                   ++   
Sbjct: 8   LKRPYTFIVMAILIVL-----ATPFVLFTTPVDVLPEINIPV-----------VSIIWT- 50

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
             +      +      +        +                + +    +   +    + 
Sbjct: 51  -YNGLSAEDMAHRIASVNERSLTTTVNDIEHIESQSLAGITILKVFLQPNANIQTAIAQT 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    ++       L+++ +   I ++    +  ++     + +   +     Q+ 
Sbjct: 110 VAVEQAQLKQMPPGATPPLVISYSASSIPVIQLGLSSTKLSEQ--QLNDTALNFLRPQLV 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                            +  + +   L     T   +       N         +     
Sbjct: 168 TIPGAAVPYPYGGKSRLISVDLNTRALLAKGLTPLDVVSAFNAQNLILPTGTAKIGPKEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +            +                     DI    +     +     ++    +
Sbjct: 228 TINMNGSPSTLEGL--------------------NDIPVRTVNGATTYLREVAHVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L    RA   P              
Sbjct: 268 PQTNIVRQNGHRGVLISVLKNGSASTLSIVNALHGLLPAARAALPPDLNITTLFDQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         + A L   ++ + +   +   +   SI L+++ +L  L  LG T+ + 
Sbjct: 328 KAAVEGVVREALVAAALTAAMILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I        ++  ++  G          S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHMGTNLHDAILEGAGEIAIPALVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++L S   + ++V  + + ++ +           S F 
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMLASYILSRTLVPTLAMLLMGHAHKPK-PDAKPSLFQ 506

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            +       F R R   + I     +              +       LG      VD  
Sbjct: 507 RLYLRFDNGFERMRAAYIVILSSLLVRRGRFGSIFLGFCVVSMALAFALGEDFFPSVDAG 566

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDS 628
            +R ++ +     I       ++   V  +  P + 
Sbjct: 567 NIRLHMRAPTGTRIEETARLADEIEKVIREVVPANE 602



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/224 (14%), Positives = 77/224 (34%), Gaps = 9/224 (4%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V   Y   D      V   V K + +        +   V  ++         +G+ 
Sbjct: 827  NIRPVIDLYVSVDKRDLGSVANQVDKLVQQARATLPRGSQITVRGQVQTMRTSYMGLGLG 886

Query: 675  ISAIAMLIYIWIRF---KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++   +L+Y+ I      W   L  ++ L   +   +    L G   ++ A+   +  +G
Sbjct: 887  VAMAIVLVYLLIVVNFQSWVDPLIIVSALPAALAGIVWMLFLTGTHLSVPALTGAIMTMG 946

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + +++    R+ +              ++    +   + T+ A  I ++PMA+   
Sbjct: 947  VATANSILMVAFARQRLAA---GAPPLTAALEAGASRIRPVLMTAFAMIIGMVPMALGLG 1003

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G          +  G++ A  S++F    +   I+   A+  R
Sbjct: 1004 EGAEQNAPLGRAVIGGLLFATVSTLFFVPLVFAGIHTRLARRQR 1047



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 53/142 (37%), Gaps = 4/142 (2%)

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           + +     W        ++ L I  +L      G   N+  +  +   +G  V+D  V  
Sbjct: 348 MILLFLGNWRSTCIIAISIPLSILSSLIALHALGQTINIMTLGGLALAVGILVDDATVTI 407

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPM 801
           + +    +      +  D I +   E    ++ +++   I  +PM    G     F +P+
Sbjct: 408 ENI---ERHLHMGTNLHDAILEGAGEIAIPALVSTLCICIVFVPMFFLTGVARYLF-VPL 463

Query: 802 AFGIVVAASSSIFIAAPILLFI 823
           A  +V A  +S  ++  ++  +
Sbjct: 464 AEAVVFAMLASYILSRTLVPTL 485


>gi|1296957|emb|CAA96500.1| hypothetical protein [Paracoccus denitrificans PD1222]
          Length = 183

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 23/173 (13%)

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
           E VGPK+S ELI+         +  M  Y+W   +     G + +LI D+          
Sbjct: 10  ESVGPKVSGELIKTAFTPWAAPSACMF-YMWSALRMAVRAGGVISLIHDV---------- 58

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                      +LT +G+S ND VVV+DR+R+N+  Y T     DL++ + NE+L R++ 
Sbjct: 59  -----------LLTTLGFSCNDTVVVFDRVRENLIKYKTR-PLLDLMNLTCNESLSRTIM 106

Query: 775 TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           T++   I++    ++GG VI  F I M +G++V   S+I++A  I+L++   R
Sbjct: 107 TAVTTGIALTATLIFGGDVIRDFVIAMLWGVIVGCYSTIYVAKNIVLWLAVKR 159


>gi|228463|prf||1804337B envD gene
          Length = 964

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 52/588 (8%), Positives = 131/588 (22%), Gaps = 34/588 (5%)

Query: 79  SFLKKEGIGVFSMRQIQN-KITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVT 137
           + +        +     +  ITL+F      +    +V   LQ     L  + ++  +  
Sbjct: 2   NGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDIAQVQVQNKLQLATPLLPQEVQQQGISV 61

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                  ++++    D   +   + S  +     D +                  +    
Sbjct: 62  EKSSSSYLMVAGFVSDNPGTTQDDISDYVASNVKDTLSRLNGVGDVQLFGAQ-YAMRIWL 120

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           D   L +   T   +     + N+       G             +  +           
Sbjct: 121 DADLLNKYKLTPVDVINQLKVQNDQIAAGQLGGTRALPGQQLNASIIAQTR--------- 171

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                    +                      +            +              
Sbjct: 172 ----FKNPEEFGKVTLRVNSDGSVVRLKDVARVELGGENYNVIARINGTPPPGLGIKLAT 227

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
             +   T +      A L+         +           S +  K         V   +
Sbjct: 228 GANALDTAKAIKAKLAELQPFFPQGMKVLYPYDTTPFVQLSITKCKNAVRSHYAGVPGDV 287

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLAL--LSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
            ++  Y              V          LL                 L VD  I+V 
Sbjct: 288 SVLAEYASNADPHHCGTRGVVRDVCHPRRFWLLHQHTNDVRDGA---CHRLLVDDAIVVV 344

Query: 436 ERIREENRKNQ-SVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAIT 491
           E +     +       + +   S+    +    +      + + FFGG      R F+IT
Sbjct: 345 ENVERVMMERYVPPKEATEKSMSQIQGALVGIAMVLSAVFIPMAFFGGSTGAIYRQFSIT 404

Query: 492 MGLSILISMFTAISIVRAMMIFI----------IRYKKMKSIDINPLSRFFLIPDCIAIQ 541
           +  ++ +S+  A  +  A+   +           +       +           + +   
Sbjct: 405 IVSAMALSVLVAFILTPALCATLLKPVSAEHHENKGGFFGWFNTTFDHSVNHYTNSVGKI 464

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                 + +  +++ +   +  L         + +G     +           +  L+ +
Sbjct: 465 LGSTGRYLLIYALIVAGMVVLFLRLPSSFLPEEDQGVFLTMIQLPAGATQERTQKVLDQV 524

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
               +  +  + E  F V      G +         +K         +
Sbjct: 525 TDYYLKNEKANVESVFTVNGFSFSGQAQNAGMAFVSLKPWEERNGDEN 572



 Score = 74.3 bits (180), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 7/197 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAM 680
             +     A           +  +         +  G      L       ++ IS + +
Sbjct: 754 SMEIQGEAAPGTSSADAMALMENLRQNYCGHGYDWTGMSYQERLSGNQAPALVAISFVVV 813

Query: 681 LIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            + +   ++ W   +  +  + L I   L    LF  + ++  +  +LT IG S  + ++
Sbjct: 814 FLCLAALYESWSIPVSVMLVVPLGIVGVLLAATLFNQKNDVYFMVGLLTTIGLSAKNAIL 873

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGS 796
           + +  +  M+         +    ++   L   + TS+A  + VLP+A+    G     +
Sbjct: 874 IVEFAKDLMEKEGKG--VVEATLMAVRMRLRPILMTSLAFILGVLPLAISNGAGSGAQNA 931

Query: 797 FAIPMAFGIVVAASSSI 813
             I +  G+V A   +I
Sbjct: 932 VGIGVMGGMVSATLLAI 948


>gi|154247895|ref|YP_001418853.1| CzcA family heavy metal efflux protein [Xanthobacter autotrophicus
           Py2]
 gi|154161980|gb|ABS69196.1| heavy metal efflux pump, CzcA family [Xanthobacter autotrophicus
           Py2]
          Length = 1057

 Score =  122 bits (304), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/591 (12%), Positives = 167/591 (28%), Gaps = 42/591 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   + I        GL       L    LD  P       I          +      
Sbjct: 11  RNLVLVFIGTVFAVAAGLYA-----LKTLPLDAIPDLSDVQVI---------VYTDYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTSMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLNA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L       L    T        +    +  ++        +IR        +E   
Sbjct: 117 AAQRLPAGVTPTLGPDATGVGWVYQYAVVAKEMTLAELRSLQDWVIRF---GASKAEGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP+RLR L  +  ++       N    G    +         + 
Sbjct: 174 EVASVGGFVKQYAIVVDPNRLRALGISLDRVRDAVKASNADVGGRTVELSEFEFMVRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                      +   + G     +        P        
Sbjct: 234 YIRSVADIE-------------------NVVLKTDRGVSLRVKDVARVEIGPDERRGITE 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   I   +   +    IE      A +          +           +   
Sbjct: 275 LNGEGEVASGIVLQRFGANALTVIENVKARLAEIATSLPKGAEIVPVYDRSELIGRAIET 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            KGT    + +V +V  + +L+ +  LVA   + + +++  A +  +G    + S+ GI 
Sbjct: 335 LKGTLIEESIIVALVCVVFLLHLRSALVAILMLPVGILIAFAAMKAIGLGSNIMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLF 478
           + +G  +D+ I++ E   +   +       +++    A      +F S +   ++ + +F
Sbjct: 395 IAVGAMIDAAIVMIENAHKHLERAPPDKPRVEILIEAASQVGPALFFSLLVITVSFLPIF 454

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   S+  +   ++++V A+M+  +R + +             + 
Sbjct: 455 TLESQEGRMFGPLAFTKTFSMAAAALLSVTLVPALMVVFVRGRIIPEHRNPINRFLIWVY 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++A+   + ++++    ++      G  +      G  + +   
Sbjct: 515 RPVISGVLKAKTLTILVALVVLGVTLWPARQLGSEFMPSLDEGTLMYMPTT 565



 Score = 44.7 bits (103), Expect = 0.062,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 82/268 (30%), Gaps = 22/268 (8%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            Q+ +     V L  V     +     I  +N        V +  +            +  
Sbjct: 777  QVPLPGGGTVPLGEVAKVELTRGATSIRTENGQLAVYVFVDIAGRDLGGYVAEAQQAVAN 836

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            +         +         + +  L     + V ++ + + + +++ F+     L  + 
Sbjct: 837  EIKLPPGTYVSWSGQFEYLQRAAARLK----IVVPVTLLVIFLLLYLNFRALTETLIVML 892

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM------------RK 746
            +L   +   +      G   ++      + L G +    V++   +            R+
Sbjct: 893  SLPFALVGGIWLMWWLGFNMSVAVAVGFIALAGVAAETGVIML--IYLEQAMAELKAERE 950

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAF 803
                  T I     I     E +   + T +A    ++P+      G  V+   A+PM  
Sbjct: 951  AQGRPFTRIDLYQAIMLGAVERVRPKMMTVIAITAGLVPILWSTGTGSEVMQRIAVPMIG 1010

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            G+V +   ++ +   +   I  WR   +
Sbjct: 1011 GMVSSTVLTLAVIPAVYGLIKGWRLPRS 1038



 Score = 42.0 bits (96), Expect = 0.46,   Method: Composition-based stats.
 Identities = 22/175 (12%), Positives = 57/175 (32%), Gaps = 39/175 (22%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I++ + ++  + +R     AL AI  L + I                         IG
Sbjct: 343 SIIVALVCVVFLLHLR----SALVAILMLPVGILIAFAAMK----------------AIG 382

Query: 732 YS----------------VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
                             ++  +V+ +   K+++         +++ ++ ++      ++
Sbjct: 383 LGSNIMSLGGIAIAVGAMIDAAIVMIENAHKHLERAPPDKPRVEILIEAASQVGPALFFS 442

Query: 776 SMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +   +S LP+          F   A    F +  AA  S+ +   +++     R
Sbjct: 443 LLVITVSFLPIFTLESQEGRMFGPLAFTKTFSMAAAALLSVTLVPALMVVFVRGR 497


>gi|309783207|ref|ZP_07677922.1| AcrB/AcrD/AcrF family protein [Ralstonia sp. 5_7_47FAA]
 gi|308918024|gb|EFP63706.1| AcrB/AcrD/AcrF family protein [Ralstonia sp. 5_7_47FAA]
          Length = 1045

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 79/661 (11%), Positives = 187/661 (28%), Gaps = 45/661 (6%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +  ++Y++   +         L ++ LD FP   P   I          H        +
Sbjct: 11  RFRGVIYALAIVVACYGLYT--LTRAKLDVFPEFAPPMSI---------VHTEAPGLTSE 59

Query: 65  FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNS 124
            V   +    +     +           Q  + ITL F D      +   VT  + G+ +
Sbjct: 60  QVETLVTQPLENALGGMVGLQSMRSRSMQGLSAITLVFDDHTNVLQVRQLVTERINGMAA 119

Query: 125 KLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
            L        L+  T     + +            ++           Q+         +
Sbjct: 120 TLPTGVMPPRLLPLTTTTSVVRIIGITSK--TRSLMDLYDIAQWTVRPQLLSVPGVADVI 177

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                  Q+  + DP++L +   +   +     L    +          R +      + 
Sbjct: 178 VFGGDARQMQVQVDPAKLMRYGLSVQDVIAAARLSTGVRGAGFIENNNQRIAVNADGQIA 237

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
              +++G+ L                                   +       +    + 
Sbjct: 238 TPQKLAGVVL--------------------RWSNGTAVRLGDVATVAWGSTPPVGAASIM 277

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIV--EERNVGADLGSDSIY 362
                Q +   +   +     ++       L    +   + +     R       S    
Sbjct: 278 GQAGVQLVLESQYGTNTLAITKSIEKTLDALGPVLVQHGVEVNAGVFRPANFIDTSVGHL 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +    + A LV+ VLF+ +L  +  +++  +I L++++   +L+ LG +L   ++ G+ +
Sbjct: 338 RTALIVGAVLVMAVLFLFLLNVRTAVISAVAIPLSLLVASIVLTSLGVSLNTMTLGGLAI 397

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFC--SLDMGFSRA----YSTIFDSNITALIATVV 476
            +G  VD  I+  E I    R+N ++    ++     RA     S +  +    ++  + 
Sbjct: 398 ALGEVVDDAIIDVENIYRRLRENCALPQPLAVFRVVLRASLEVRSAVVFATFIVMLIFLP 457

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFF 532
           L       G       I   L++L S+  A+++  AM +  + R           +    
Sbjct: 458 LLTLSGVAGKLFAPLGIAYILAVLASLAVALTLTPAMALALLTRRPLPAREPHWIVGLKA 517

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
                +       +   V ++++       L F  G       +G   + +       L 
Sbjct: 518 SYTALLMKIEQHMKAVTVTVALMCVTALAALPFMSGNFIPQLREGHYIVHMGLAPGTSLE 577

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
                   +    +             R       +  Q    E+  + ++       + 
Sbjct: 578 ESMRIGTQISKALMQVPGVRLVAQRAGRANNVVDPTGVQLSEFEIDLEPMSASDQSWALY 637

Query: 653 N 653
            
Sbjct: 638 R 638



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 67/188 (35%), Gaps = 11/188 (5%)

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFF 711
                        L    IVG ++    + +++        A+ +   + L +       
Sbjct: 324 FRPANFIDTSVGHLRTALIVGAVLVMAVLFLFLL---NVRTAVISAVAIPLSLLVASIVL 380

Query: 712 ALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKLYTTSISFRDLIDKSINE 767
              G+  N   +  +   +G  V+D ++    +Y R+R+N  L      FR ++  S+ E
Sbjct: 381 TSLGVSLNTMTLGGLAIALGEVVDDAIIDVENIYRRLRENCALPQPLAVFRVVLRASL-E 439

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFA---IPMAFGIVVAASSSIFIAAPILLFIY 824
                V+ +    +  LP+    G     FA   I     ++ + + ++ +   + L + 
Sbjct: 440 VRSAVVFATFIVMLIFLPLLTLSGVAGKLFAPLGIAYILAVLASLAVALTLTPAMALALL 499

Query: 825 DWRAKNAR 832
             R   AR
Sbjct: 500 TRRPLPAR 507



 Score = 48.9 bits (114), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 80/218 (36%), Gaps = 8/218 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
            +   + L  +P           +  +        +          +   +LI  G + +I
Sbjct: 813  QTVSINLGSRPVSDFVGEAQARVNHEIKMPPGTYAVFGGESEARAQSQHDLIAYGTMSLI 872

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
               + + + +  R +    L  +T L   +   +    + G   +L ++   +TL G S+
Sbjct: 873  GITLLLFLALKSRRRV---LLVMTNLPFALVGGVLSVVVAGGNLSLGSMVGFVTLFGISL 929

Query: 735  NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV----WG 790
             + +++       + +     S    +    +E L   + T++   +++LP+AV     G
Sbjct: 930  RNSIMLISHYEHLVHVDGLPWSMDTTVR-GASERLVPILMTALVTALALLPLAVTSGAAG 988

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
              + G  AI +  G++ + + ++ +   + L    +  
Sbjct: 989  NEIEGPMAIVILGGLITSTALNLIVLPTLALHYGRFER 1026


>gi|253996850|ref|YP_003048914.1| CzcA family heavy metal efflux pump [Methylotenera mobilis JLW8]
 gi|253983529|gb|ACT48387.1| heavy metal efflux pump, CzcA family [Methylotenera mobilis JLW8]
          Length = 1041

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/574 (11%), Positives = 158/574 (27%), Gaps = 44/574 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           NN  LV+L +++     + A+     ++ LD  P       I                  
Sbjct: 11  NNRLLVLLATLMVIAWGVFAML----KTPLDAIPDLSDTQVI---------IRTQWPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   L          +              + + + F D   +     +V  +L  +
Sbjct: 58  PQIVENQLTYPLTTTMLSVPGVKTVRGYSFFGDSFVYILFNDGTDQYWARSRVLEYLSQI 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +SKL      +L    T                     E           ++       +
Sbjct: 118 SSKLPKGANPSLGPDATGVGWVYEY-ALVDKSGKHDLGELRALQDWFLKFELKTIPGVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP +LR      +K+       N    G +               
Sbjct: 177 VATLGGMVRQYQVQVDPDKLRNYRIPLSKVVSAIQSANQETGGAVVETAEAEYMVRAHGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E   +                     + +     G              P        +
Sbjct: 237 LESLEDFRN------------------IPLMVSNSGTPILLSDVAHIQIGPELRRGVAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   +A  +    I+      A L+         +           +    
Sbjct: 279 NGEGEVTGGVIVMRAGKNALEAIDAVKAKLATLKKSLPEGVEIVTTYDRSQLIKRAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  ++ + V+++  ++   G    + S+ GI +
Sbjct: 339 THKLIEEFIVVALVCAVFLWHFRSALVAIVALPIGVLVSFIVMYYQGVNANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKNQSVF---------CSLDMGFSRAYSTIFDSNITALIA 473
            IG  VD+ I++ E    +    ++             +    S     +F S +   ++
Sbjct: 399 AIGAMVDAAIVMIENAHRQLENYKNEHGEPNNSQRIKVIIDAASEVGPALFFSLLIITLS 458

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSR 530
            + +F      G      A T   ++  +   +++++  +M   IR       D      
Sbjct: 459 FIPVFTLEAQEGKLFAPLAFTKTYAMAAAAGLSVTLIPVLMTIFIRGHIRPEHDNPLNRG 518

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
              I   +  + +      +G++++  + ++  L
Sbjct: 519 LIAIYKPLLSKVLHYPKVTLGVALILVLITLYPL 552



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 82/260 (31%), Gaps = 14/260 (5%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       V L  V     +     I  +N        V +  +   S  +     + K
Sbjct: 785  PIITEQGATVPLGEVAEVKVTDGPPMIKSENARPNVWVYVDIHDRDLVSFVKDAKAMLDK 844

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +                   + S+ L    +V + +  I +L+++  + +   AL  + +
Sbjct: 845  ELQLPAGYSLAWSGQFEYFERASKRL--SYVVPMTLGIIFILLFLAFK-RMTPALLILGS 901

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-------DRMRKNMKLYT 752
            L   +   + F    G  F++ +   ++ L G +    +++         R +       
Sbjct: 902  LPFALVGAVWFLYFLGHHFSIASGVGMIALSGLAAEFGIIMLVYLDDAIARYK-AAGKLN 960

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAA 809
                +   + +     +     T       ++P+ +    G   +   A PM  G++ A 
Sbjct: 961  NKEDYYAALIEGAALRVRPKAMTVAVILAGLIPILIGTGTGSEAMSRIAAPMVGGMLTAP 1020

Query: 810  SSSIFIAAPILLFIYDWRAK 829
              S+F+     + +    AK
Sbjct: 1021 LLSLFVLPAAYILLKRSYAK 1040



 Score = 51.2 bits (120), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 77/211 (36%), Gaps = 12/211 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
            A    L  +KK + E V + T  +   +  +    L  K I   I+ A+   +++W   
Sbjct: 302 DAVKAKLATLKKSLPEGVEIVTTYDRSQLIKRAVDNLTHKLIEEFIVVALVCAVFLW--- 358

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            +  AL AI  L + +  +       G+  N+ ++  +   IG  V+  +V+ +   + +
Sbjct: 359 HFRSALVAIVALPIGVLVSFIVMYYQGVNANIMSLGGIAIAIGAMVDAAIVMIENAHRQL 418

Query: 749 KLYTTSIS------FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AI 799
           + Y              +I  + +E      ++ +   +S +P+          F   A 
Sbjct: 419 ENYKNEHGEPNNSQRIKVIIDAASEVGPALFFSLLIITLSFIPVFTLEAQEGKLFAPLAF 478

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              + +  AA  S+ +   ++        + 
Sbjct: 479 TKTYAMAAAAGLSVTLIPVLMTIFIRGHIRP 509


>gi|188591817|ref|YP_001796416.1| Cobalt-zinc-cadmium resistance membrane component, Cation efflux
           system [Cupriavidus taiwanensis]
 gi|170939212|emb|CAP64255.1| Cobalt-zinc-cadmium resistance membrane component, Cation efflux
           system [Cupriavidus taiwanensis LMG 19424]
          Length = 1055

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/682 (8%), Positives = 165/682 (24%), Gaps = 65/682 (9%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  +G+         +  +D  P                 +++ ++V+          
Sbjct: 16  VLLVVLGMAALGVYNYTRLPIDAVPDI---------------TNVQVQVNTAAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
               +    +   + L          R   +++T+ F D          V   +Q     
Sbjct: 61  AEQRITFPIETAMAGLPGLEQTRSLSRYGLSQVTVIFKDGTDIYFARQLVNQRIQEARES 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQIGISES 179
           L V     +   +T      + +    +             +           Q+     
Sbjct: 121 LPVGLTPTMGPISTGLGEIYMWTVEATEGAKKPDGKPYTPTDLREIQDWVIKPQLRTVPG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         +        RL     + A++       N +        R  +     
Sbjct: 181 VTEINTIGGYAKEYVVAPSLERLSSYGLSLAELVAALDKNNMNVGAGYIERRGEQYLVRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V    +I  + +                                  ++     +   
Sbjct: 241 PGQVRSIEDIGDVVIG--------------------ANKGIPIRIRDVADVAIGKELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +      A +          +           + 
Sbjct: 281 AATENGQEVVLGTVFMLIGENSRAVSQAVDKKIAAINKTLPAGVKAVPVYDRTTLVDKAI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+ VLF+ +   +  ++    I L+++ T   +     +  L S+  
Sbjct: 341 ATVKKNLLEGAILVIAVLFLFLGNMRAAVITALVIPLSMLFTFTGMVSYKVSANLMSLGA 400

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTIFDSNIT 469
           +  GI   VD  +++ E         QS           F  +      A   +    + 
Sbjct: 401 LDFGII--VDGAVVIVENCVRRLAHAQSLHGRPLTRTERFHEVFNASKEARRALIFGQLI 458

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
            +I  + +F      G      A T+ L++L +M  +++ + A +   +  +  +  +  
Sbjct: 459 IMIVYLPIFALSGVEGKMFHPMAFTVVLALLGAMILSVTFIPAAVALFMGDRISEKENRL 518

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      +           V  ++L                    +G I +     
Sbjct: 519 MAWARKKYEPALDAALRNTSIVAVFAAVLVLFSVAVASRLGTEFIPNLNEGDIAV---HA 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             +  + +   +      +   +     +    ++      +      +      +    
Sbjct: 576 LRIPGTSLSQAVAMQGELEKHIRKVPEVERVFAKIGTAEIATDPMPPNVADTFVMLKPAD 635

Query: 647 PLSTIQNTEIVGPKISRELIRK 668
              + + ++       +E++ K
Sbjct: 636 QWPSPRRSQAEVLAAIQEIVSK 657



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/135 (17%), Positives = 56/135 (41%), Gaps = 8/135 (5%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               T G  +L+  GI  +++A    + L G +V + +V+   +R    L        + +
Sbjct: 915  FALTGGILSLWLRGIPLSISAAVGFIALSGVAVLNGLVMLSFIR---TLREEGRELDEAV 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   L   + T++ A +  +PMA+    G  V    A  +  GI+ + + ++ +   
Sbjct: 972  RVGAITRLRPVLMTALVASLGFVPMAIATGTGAEVQRPLATVVIGGILSSTALTLLVLPA 1031

Query: 819  ILLFIYDWRAKNARI 833
            +  +++    + A +
Sbjct: 1032 LYRYVHRRDEEEAAV 1046



 Score = 47.0 bits (109), Expect = 0.013,   Method: Composition-based stats.
 Identities = 60/528 (11%), Positives = 161/528 (30%), Gaps = 33/528 (6%)

Query: 1    MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
            +RN   + +  +++    + +A      +   +  P+    +     L + G + L   V
Sbjct: 534  LRNTSIVAVFAAVLVLFSVAVA-----SRLGTEFIPNLNEGDIAVHALRIPG-TSLSQAV 587

Query: 61   DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKEN------IADK 114
                 +   +     E+     K G    +   +   +  +F   +  +          +
Sbjct: 588  AMQGELEKHI-RKVPEVERVFAKIGTAEIATDPMPPNVADTFVMLKPADQWPSPRRSQAE 646

Query: 115  VTLFLQGVNSKLNVDPKK--NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
            V   +Q + SK+  +  +    +     + +S V S   +        + +         
Sbjct: 647  VLAAIQEIVSKVPGNNYEFTQPIQMRFNELLSGVRSDVAVKLFGDDMDQLNKAAAGIAKA 706

Query: 173  QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
              G++ +   ++     L  L    D  ++ +   + +++         S          
Sbjct: 707  LQGVAGAESVKVEQTTGLPMLTINIDRQKVSRYGISLSEVQETI-----STAIGGREAGL 761

Query: 233  LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
            L + D    ++    +     +        P   +     +                  +
Sbjct: 762  LFEGDRRFDILVRLPDEVRQDIEALKRLPVPLPKEVASQATSYVPLGELASFDMAPGPNQ 821

Query: 293  PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
                    RV+ +  +             +F  E    +A+ ++  +            +
Sbjct: 822  ISRENGKRRVVISANVRGRDIG-------SFVAEAEDKIASQVQIPAGYWTTWGGTFEQL 874

Query: 353  GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
             +      +      ++  L+L  +F      K GL+    I   +   +  L L G  L
Sbjct: 875  QSATSRLKVVVPVALLLVFLLLFTMF---GNLKDGLLVFTGIPFALTGGILSLWLRGIPL 931

Query: 413  TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            ++ +  G +   G+AV + +++   IR    + + +  ++ +G       +  + + A +
Sbjct: 932  SISAAVGFIALSGVAVLNGLVMLSFIRTLREEGRELDEAVRVGAITRLRPVLMTALVASL 991

Query: 473  ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
              V +      G    R  A  +   IL S    + ++ A+  ++ R 
Sbjct: 992  GFVPMAIATGTGAEVQRPLATVVIGGILSSTALTLLVLPALYRYVHRR 1039



 Score = 47.0 bits (109), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 93/266 (34%), Gaps = 21/266 (7%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + +      D+++ +         +           F++  +     S A  + +  + K
Sbjct: 261 IPIRIRDVADVAIGKELRTGAATENGQEVVLG--TVFMLIGENSRAVSQAVDKKIAAINK 318

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTL 700
            +   V    + +   +  K    + +  + G I+    + +++        A+     +
Sbjct: 319 TLPAGVKAVPVYDRTTLVDKAIATVKKNLLEGAILVIAVLFLFLG---NMRAAVITALVI 375

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM--------KLYT 752
            L +  T      + +  NL ++ A+    G  V+  VV+ +   + +        +  T
Sbjct: 376 PLSMLFTFTGMVSYKVSANLMSLGAL--DFGIIVDGAVVIVENCVRRLAHAQSLHGRPLT 433

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAA 809
            +  F ++ + S  E     ++  +   I  LP+    G    +    A  +   ++ A 
Sbjct: 434 RTERFHEVFNAS-KEARRALIFGQLIIMIVYLPIFALSGVEGKMFHPMAFTVVLALLGAM 492

Query: 810 SSSI-FIAAPILLFIYDW-RAKNARI 833
             S+ FI A + LF+ D    K  R+
Sbjct: 493 ILSVTFIPAAVALFMGDRISEKENRL 518


>gi|85711458|ref|ZP_01042516.1| Divalent cation exporter protein [Idiomarina baltica OS145]
 gi|85694610|gb|EAQ32550.1| Divalent cation exporter protein [Idiomarina baltica OS145]
          Length = 1022

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 90/656 (13%), Positives = 191/656 (29%), Gaps = 45/656 (6%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
               L+  I  + ++ A      Q  +D FP   P               ++L       
Sbjct: 10  LKNRLFVFITFLLIIAAGIQSFRQLPVDAFPEISPTQ-----------VKIILRAPGMAA 58

Query: 66  --VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +    +     +  + I   + +     ITL F +         +V   L  V 
Sbjct: 59  ERVENQVTHPIETELLGIPNQTILRSTTKYGITSITLDFEEGTDIYWARQQVAEKLAAVR 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    +  L   +T      + +  N D  +S        +IR     +   E     
Sbjct: 119 DALPAGIQGGLAPMSTPLSEMFMFTVENPDLTLSEKRHLLDWVIR---PALRTVEGVADV 175

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                 +       DP +L +   +   +                        + NQ   
Sbjct: 176 TNLGGKVRTFQFSPDPIKLSEAKVSLDTIKTRL-------------------EEANQVGN 216

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
             +V + G     A  +        +  +S +      +       +             
Sbjct: 217 LGRVTL-GTETFSARVSGRIVELNDLAALSVENTNGDVYRLEQLGEVSLSYLPRFGAITK 275

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                 + +  G    +    + +       L++         V     G    + +   
Sbjct: 276 DGQEAVEGLVVGLKGANAAAVVASVKDKLTQLQSSLPQHTDINVFYNRKGLIDTAIAGIS 335

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   LV+ VL   +   +  ++   SI +  ++T   L  +G +  L S+ G+V+ 
Sbjct: 336 DALMESIVLVIAVLVFFLRNIRASILVSLSIPIAALITFICLRQIGLSANLMSLGGLVIA 395

Query: 424 IGLAVDSNILVNERIREENRKNQS---VFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           IG+ VDS++++ E++  E    ++   +        S A S +  + I  L+   +L   
Sbjct: 396 IGMIVDSSVVITEKVETELNSEKNLPILHKIYRASLSVAPSVVSGTIIIVLVFLPLLTLT 455

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
           G  G      A+T+ ++I  S+ TA++++ A+   ++R  K ++  +  L   + +    
Sbjct: 456 GLEGKLFSPVALTIVIAIAASLVTALTLIPALASLMMRPNKRRNKMLERLQASYRVILNS 515

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNL 598
           A+         +    L       L F       +       + V   +   LS+  S  
Sbjct: 516 ALTH----KPLLITGFLVLFGLSALSFIMVGKTFMPTMDEGDIIVQFEKAPTLSLSESIA 571

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              Q+ +   +     K  + R                 V  ++            
Sbjct: 572 IDTQVENALLEQVPEIKQIVARTGSDELGLDPMGLNETDVFMELKPRDEWRFDNKQ 627



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/258 (10%), Positives = 83/258 (32%), Gaps = 5/258 (1%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
            +         L  +     S      +      E    + +  +  ++ A    ++   
Sbjct: 245 SVENTNGDVYRLEQLGEVSLSYLPRFGAITKDGQEAVEGLVVGLKGANAAAVVASVKDKL 304

Query: 640 KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            ++   +P  T  N       +    I      ++ S + ++  +    +    ++    
Sbjct: 305 TQLQSSLPQHTDINVFYNRKGLIDTAIAGISDALMESIVLVIAVLVFFLRNIRASILVSL 364

Query: 699 TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
           ++ +    T       G+  NL ++  ++  IG  V+  VV+ +++ +       ++   
Sbjct: 365 SIPIAALITFICLRQIGLSANLMSLGGLVIAIGMIVDSSVVITEKV-ETELNSEKNLPIL 423

Query: 759 DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFI 815
             I ++        V  ++   +  LP+    G     F   A+ +   I  +  +++ +
Sbjct: 424 HKIYRASLSVAPSVVSGTIIIVLVFLPLLTLTGLEGKLFSPVALTIVIAIAASLVTALTL 483

Query: 816 AAPILLFIYDWRAKNARI 833
              +   +     +  ++
Sbjct: 484 IPALASLMMRPNKRRNKM 501



 Score = 37.7 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 48/118 (40%), Gaps = 8/118 (6%)

Query: 692 FALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
             L AI    +    + G  +L   G   ++ A    + L+G ++ + +V+     +  K
Sbjct: 881 LGLTAIVLTNIPFALSGGAISLWISGQYMSVPASVGFIALMGVAILNGIVMVSHF-EQTK 939

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
           ++ + +S   L+     + L   + T++ A   ++P+ +    G  +    A  +  G
Sbjct: 940 IHFSHLS--SLVIAGATDRLRPVLITAITAIFGLIPLLISTGPGSEIQRPLAAVVIGG 995


>gi|330998137|ref|ZP_08321965.1| RND transporter, HAE1/HME family, permease protein [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569226|gb|EGG51017.1| RND transporter, HAE1/HME family, permease protein [Paraprevotella
           xylaniphila YIT 11841]
          Length = 1018

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 75/689 (10%), Positives = 208/689 (30%), Gaps = 41/689 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +    +  IG +           +   P                   + ++V  
Sbjct: 9   RPIAVTMCLIALIAIGCIS-----FKYIPVSLMPDIDIP-------------QITVQVSY 50

Query: 63  DDFVNGFLQ-MYSDELRS---FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +       LRS    +          R     I + F      + I  +V   
Sbjct: 51  PGASVHEVDAEVVAPLRSQLMQVAGLKDIHSESRMDAGSIFMEFEPGSNIDLIFIEVNEK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +    +++  + ++  +V  +  +I       ++          +  + +         +
Sbjct: 111 IDRAMNRMPKELERPKVVKASAMDIPAFYLDLSLK---------NEGVGKDGSLPKAGMK 161

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
            T     +  I+ +   +   + +  + GTT                 +      +    
Sbjct: 162 FTQLGEFARNIVSKRIEQLPQTAMVDISGTTGAEIICIPDEAKLLSMGLDMETLSKAIQS 221

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           N   +     + G++      +      + + ++  +  G     +       K  + V 
Sbjct: 222 NNITLGALSVVDGLYRYNIHFDSQLLNREDIENVYINHEGRLVQLKDLCRVEEKLASRVG 281

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
             R      +  A+       +    ++ +            P     +          S
Sbjct: 282 LVRHDGKNAVTMAVIKQN--DAQMEDLQKSIGALVEDLRKEYPDISFDLTRDQTRLLTYS 339

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                    + A L  +VLF+ +   +  L+   +I L +I+TL    LLG +L + S++
Sbjct: 340 IDNLGQNLYVGAVLACLVLFLFMKDWRLPLLIIITIPLTLIVTLLSFHLLGISLNIISLS 399

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL- 477
           G++LG+G+ VD++I+V + + +  R+   +  +L  G +  ++ +  S +T     V L 
Sbjct: 400 GLILGVGMIVDNSIIVIDNVMQRWRQGMPLADALVKGTNEVFTPMLSSVLTTCSVFVPLI 459

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           F  G      +   MG++I +     ++++   + F++ Y+K K+     +       + 
Sbjct: 460 FLSGIAGALFYDQAMGVTIALFASLFVAVLVIPVYFMVLYRKRKTCPEGEVLDRKFHFNF 519

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG-------VLANRPVD 590
                   ++         +   + +     +  G++ +    +        +  N  + 
Sbjct: 520 YTPYECGVKWVLRNPVKSVTAFCLAIPAIFLIYKGLEKERLPYMEHNDALMKIDWNAGIS 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +    + +  +                +        + +  +  +   + +  E +  + 
Sbjct: 580 VEENDARVGDVLKQVDGMVQTSTAMVGVQDFVLSHTEDLTTSEAVVYFQAEDGETLRQAQ 639

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +    +  +     +  G+ G I   I 
Sbjct: 640 EKMRNYMAERYPHGTVEFGVSGNIFDLIF 668



 Score = 95.5 bits (235), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 99/288 (34%), Gaps = 13/288 (4%)

Query: 544  RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
            R R       +         L       G+D +  +Q  V  +  VD+ +     E+   
Sbjct: 739  RLRMLVSQNEVYAINEGARSLPVIIGERGMDSRRLLQYTVRNDEGVDIPLSYLIRETQGE 798

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                  + +G   + V++        +     E   K         T             
Sbjct: 799  DFKRLYSGNGGDYYPVKIAANDRTVESIVDFTERFVKADPHYSASFTGNYYSSRE----- 853

Query: 664  ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             +I + ++ + ++   +   +  +F+     L  ++ +++D+        L G   N+ +
Sbjct: 854  -MIGELVLVLSVAVALLYFILAAQFESIVQPLVILSEIVIDVFWVFLVLWLLGESLNIMS 912

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
            +  ++ + G  +ND ++  D M    +L    +     I +  +  L   V TS+   ++
Sbjct: 913  MIGIVVMSGIIINDSILKVDTMN---RLRREGMPLVTAIWRGGHSRLRPIVMTSLTTILA 969

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +LP       G ++    ++ +  G+V     S+F    +   IY  R
Sbjct: 970  ILPFLSRGDMGSALQYPLSLTLIVGMVAGTLVSLFFIPLVYYLIYRKR 1017



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 86/223 (38%), Gaps = 7/223 (3%)

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKG 669
           +       +  ++          + +  + + + +  P  +   T      ++  +   G
Sbjct: 285 HDGKNAVTMAVIKQNDAQMEDLQKSIGALVEDLRKEYPDISFDLTRDQTRLLTYSIDNLG 344

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
               + + +A L+       W   L  I T+ L +  TL  F L GI  N+ +++ ++  
Sbjct: 345 QNLYVGAVLACLVLFLFMKDWRLPLLIIITIPLTLIVTLLSFHLLGISLNIISLSGLILG 404

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           +G  V++ ++V D +   M+ +   +   D + K  NE     + + +      +P+   
Sbjct: 405 VGMIVDNSIIVIDNV---MQRWRQGMPLADALVKGTNEVFTPMLSSVLTTCSVFVPLIFL 461

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAA---PILLFIYDWRAK 829
            G     F    A G+ +A  +S+F+A    P+   +   + K
Sbjct: 462 SGIAGALF-YDQAMGVTIALFASLFVAVLVIPVYFMVLYRKRK 503


>gi|326797658|ref|YP_004315477.1| heavy metal efflux pump, CzcA family [Sphingobacterium sp. 21]
 gi|326548422|gb|ADZ76807.1| heavy metal efflux pump, CzcA family [Sphingobacterium sp. 21]
          Length = 1460

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 70/610 (11%), Positives = 161/610 (26%), Gaps = 45/610 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE---VDEDDFV 66
           L   +  +GL+      L Q  +D  P                   ++ +   +   +  
Sbjct: 14  LIVALMTLGLIAWGLYSLKQLPIDATPDITNNQ-----------VQVITQSPSLATPEV- 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    ++  S + +        R   + +T+ F D         +V   L    + +
Sbjct: 62  ERLITFPIEQTMSTIPEIEQVRSISRFGLSVVTIVFHDDVDIYWARQQVNEKLTEAGNNI 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNID---QVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             D  K  +   +     I     +     +    A E           Q+  +    + 
Sbjct: 122 PSDVGKPEIAPISTGLGEIYQYVVHAKPGYEEKYDARELRTIEDWIVRRQLLGTPGIAEV 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                +L Q     DP +L     +   +       N +  G     +       ++ LV
Sbjct: 182 NSFGGLLKQYEIALDPDKLNSYNLSINDVFSALERNNQNTGGAYIDKKPNAYFIRSEGLV 241

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +I  I +  +                 + +        T+ + G+           
Sbjct: 242 GSIDDIKKIVVRKSPKQVPVLIRDIAEVKLGNAIRYGALTRTTKKSQGE----------- 290

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   I       + N  +       A +                      +     
Sbjct: 291 ----AVGGIVMMLKGSNANEVVSKVKEKIARINKTLPEGVTIEPFLDRSALVDRAIGTVA 346

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI--V 421
                 A +V+ VL + +   + G+V    I L+++  ++++++ G +  L S+  I   
Sbjct: 347 KNLIEGALIVIFVLVLFLGNLRAGIVVASVIPLSMLFAISMMNIFGVSGNLMSLGAIDFG 406

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN-------ITALIAT 474
           L +  AV         +      N+     +D     + S I  +        +   +  
Sbjct: 407 LIVDGAVIIVEATMHHLGLSRNPNKLSQKEMDDEVYESASKIRSAAAFGEIIILIVYLPI 466

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           + L    G      A T+  +IL +   +++ V  M   I+  K     + +     F  
Sbjct: 467 LALVGIEGKMFGPMAQTVSFAILGAFILSLTYVPMMSALILSKKISHKRNFSDRMMAFFH 526

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK---GGIQLGVLANRPVDL 591
                +  +  R     +     +  + +     +          G   +         L
Sbjct: 527 KYYDPMIRVALRNRVTVVLTAVVLLGLSVFAFTRMGGEFIPTLEEGDFAVETRLLTGSSL 586

Query: 592 SVVRSNLESL 601
           S     +   
Sbjct: 587 SQTIDKVNQA 596



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 95/241 (39%), Gaps = 10/241 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + S+       Q    +    + +         ++ V E+ +K  ++I   +    T 
Sbjct: 805  SQVASVDFEVGPNQIQREDTKRRIIVGLNVRGRDIESVVEEIEQKIGSQIKLPTGYYITY 864

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +  +   ++  + V ++ + +L+ ++  F        I T I  +    G FAL  
Sbjct: 865  GGQFENLQAASQRLSIAVPVALLLILLLLYFTFGSIKQSILIFTAI-PMAAIGGVFALLL 923

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS-ISFRDLIDKSINETLGRS 772
             G+ F+++A    + L G +V + +V+     +  +L  +     R+++ K     L   
Sbjct: 924  RGMPFSISAGVGFIALFGVAVLNGIVLIT---EFNRLKKSGIKDLREIVIKGTAVRLRPV 980

Query: 773  VYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + T+  A +  +PMA+    G  V    A  +  G++ +   ++ +   +  +   ++ K
Sbjct: 981  LMTATVASLGFMPMALSTAAGAEVQKPLATVVIGGLITSTILTLLVLPVLYTYFESFKLK 1040

Query: 830  N 830
             
Sbjct: 1041 K 1041



 Score = 40.8 bits (93), Expect = 0.93,   Method: Composition-based stats.
 Identities = 30/234 (12%), Positives = 80/234 (34%), Gaps = 10/234 (4%)

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
           + ++       +V +      +   ++V E + +    +    TI+        + R + 
Sbjct: 284 TKKSQGEAVGGIVMMLKGSNANEVVSKVKEKIARINKTLPEGVTIEPFLDRSALVDRAIG 343

Query: 667 RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                 +  + I + + +         +   + + L +   +    +FG+  NL ++ A+
Sbjct: 344 TVAKNLIEGALIVIFVLVLFLGNLRAGIVVASVIPLSMLFAISMMNIFGVSGNLMSLGAI 403

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTT-----SISFRDLIDKSINETLGRSVYTSMAAFI 781
               G  V+  V++ +    ++ L             D + +S ++    + +  +   I
Sbjct: 404 --DFGLIVDGAVIIVEATMHHLGLSRNPNKLSQKEMDDEVYESASKIRSAAAFGEIIILI 461

Query: 782 SVLPMAVWGGSVIGSFAI---PMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             LP+    G     F      ++F I+ A   S+     +   I   +  + R
Sbjct: 462 VYLPILALVGIEGKMFGPMAQTVSFAILGAFILSLTYVPMMSALILSKKISHKR 515


>gi|254473295|ref|ZP_05086692.1| acriflavin resistance protein [Pseudovibrio sp. JE062]
 gi|211957411|gb|EEA92614.1| acriflavin resistance protein [Pseudovibrio sp. JE062]
          Length = 1158

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 57/516 (11%), Positives = 135/516 (26%), Gaps = 50/516 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +     + ++   +   G++            +  P                     + V
Sbjct: 9   LHRPKTVFVMMLFMVIAGIMS-----YIAIPKEAAPDIDVPF-------------FYVSV 50

Query: 61  DEDDFVNG----FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
            +           +    +     L+          +    I L F  S  K+     V 
Sbjct: 51  SQSGISPEDGTRLIGQPMETELRGLEGLKEITTIASEGHVGILLEFDISVDKDKALTDVR 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
             +    SK+  D K+  + T        +    + D         +     +  D+I  
Sbjct: 111 EKVDTAKSKIPEDAKEPTVSTHNMALQPTMTIALSGDVPSRTLYRLAD----RLKDEIES 166

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
             S  +   + +    L    D  ++     + +++     L N             R +
Sbjct: 167 IASVKEVELTGQRDELLEVIIDTLKMESYSISQSELINALSLNNQLIAAGFIDGGAGRFN 226

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                L+ D                       V  +   + G           I +    
Sbjct: 227 IKVPGLILDA--------------------DDVYSLPVKQSGEGVVTLGDIATIKRTFKD 266

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                ++            +   +          +   +     P               
Sbjct: 267 PSTFTLVNGQPAVSLDVVKRIGENIIENNAAVRTVVEEITKDLPPTVSVSYMLDESDNIF 326

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
              +  + +      LV+IV+   +      ++   +I  + +L    L+ +G T+    
Sbjct: 327 QVLNSLESSIMTAIFLVMIVVVAALGLR-SAVLVGLAIPTSFMLGFLTLTTIGMTVNTMV 385

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+VL +G+ VD  I++ E    +  +      +        +  I  S  T L A + 
Sbjct: 386 MFGLVLTVGMLVDGAIVMVEYADRKAAEGMPPRDAYIRAAKLMFWPIVSSTATTLAAFLP 445

Query: 477 LFFF---GGGAVRGFAITMGLSILISMFTAISIVRA 509
           +  +    G  +    I + + +  S+ TA+  +  
Sbjct: 446 MLLWPGVPGEFMSYLPIMVIIVLSGSLLTAMVFLPV 481



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 80/229 (34%), Gaps = 13/229 (5%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           R+  +      ++ Q            +    ++ A   V+E + K +   V +S + + 
Sbjct: 262 RTFKDPSTFTLVNGQPAVSLDVVKRIGENIIENNAAVRTVVEEITKDLPPTVSVSYMLDE 321

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL- 713
                ++   L    +  + +  I ++  + +R         +  L +  +  LGF  L 
Sbjct: 322 SDNIFQVLNSLESSIMTAIFLVMIVVVAALGLR------SAVLVGLAIPTSFMLGFLTLT 375

Query: 714 -FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
             G+  N   +  ++  +G  V+  +V+ +      +     +  RD   ++        
Sbjct: 376 TIGMTVNTMVMFGLVLTVGMLVDGAIVMVE---YADRKAAEGMPPRDAYIRAAKLMFWPI 432

Query: 773 VYTSMAAFISVLPMAVWGGSVIGSFAI--PMAFGIVVAASSSIFIAAPI 819
           V ++     + LPM +W G      +    M   ++  +  +  +  P+
Sbjct: 433 VSSTATTLAAFLPMLLWPGVPGEFMSYLPIMVIIVLSGSLLTAMVFLPV 481


>gi|153868682|ref|ZP_01998438.1| Acriflavin resistance protein [Beggiatoa sp. PS]
 gi|152074728|gb|EDN71556.1| Acriflavin resistance protein [Beggiatoa sp. PS]
          Length = 646

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 75/648 (11%), Positives = 174/648 (26%), Gaps = 45/648 (6%)

Query: 12  SMICCIGLLIALPNFLP--QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
            ++    ++I+   ++   Q+ LD  P       I                     V   
Sbjct: 14  FLVLVATVIISAWGWISVQQTPLDAIPDLSDVQVI---------IKTTYPGQSPRVVEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +    +         + + + F D         +V  +L    S L   
Sbjct: 65  VTYPITTTMLSVPGAQVVRGYSFFGDSYVYVIFEDGTDMYWARSRVLEYLNQAASSLPPG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            +  L    T                     +           ++       +      +
Sbjct: 125 VQPRLGPDATGVGWIYAY-ALVDRTGNHDLSQLRSLQDWFLKFELQTVPGVSEVATVGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     DP +LR      +K+S      N    G +  +         +  +    +I
Sbjct: 184 VRQYQVVVDPEKLRAFSIPLSKVSQAIKNANQEVGGSVIELAEAEYMIRTRGYLTSIEDI 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                              ++ ++  E G              P    +   +     + 
Sbjct: 244 E------------------IIPVTVSETGTPLLVRDLATVQIGPEMRRVIADLDGEGEVT 285

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   +   +   TI         L+AG       I         L +    K      
Sbjct: 286 GGIIVMRYGENALTTIALVKQKLEALKAGLPKGVEIIETYNRSTLILRAVDNLKEKLIEE 345

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V IV  + + + +   VA  ++ + + ++  +++  G    + S+ GI + IG  VD
Sbjct: 346 FIVVAIVCLIFLFHLRSAFVAIITLPIGIFISFIIMNQQGINANIMSLGGIAIAIGAMVD 405

Query: 430 SNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           + I++ E   +               +Q  +  +    S     +F S +   ++ + +F
Sbjct: 406 AAIVMIENAHKHIERWKHAHPKQKIPSQEHWELIAQSASEVGPALFFSLLIITLSFIPVF 465

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   +++IV  +M + I    + S   NP++   ++ 
Sbjct: 466 TLEAQEGRLFAPLAFTKTYAMAAAAGLSVTIVPVLMGYFI-RGWIPSEKHNPINLLLILI 524

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
               +  +              + SI +      +     KG +++     +      V 
Sbjct: 525 YRPLLWIVLFLPRTTLFLAFLVMLSISIPLFGIGSLLTPVKGSLEIVEPVTKTWAEYEVS 584

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
              +     D               L       V     ++  +  + 
Sbjct: 585 EVKDESPKSDHGVLENISSFLKQHILSKIEKYRVVMLEKVKQWQTDLP 632



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 109/300 (36%), Gaps = 20/300 (6%)

Query: 550 VGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQ 609
           VG S++    +  ++ T G    I+    I + V       L    + ++          
Sbjct: 217 VGGSVIELAEAEYMIRTRGYLTSIEDIEIIPVTVSETGTPLLVRDLATVQIGPEMRRVIA 276

Query: 610 NFDGEKNFLVRLQYQPGDSVAQTRV------LEMVKKKITEIVPLSTIQNTEIVGPKISR 663
           + DGE      +        A T +      LE +K  + + V +    N   +  +   
Sbjct: 277 DLDGEGEVTGGIIVMRYGENALTTIALVKQKLEALKAGLPKGVEIIETYNRSTLILRAVD 336

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
            L  K I   I+ AI  LI++   F    A  AI TL + I  +       GI  N+ ++
Sbjct: 337 NLKEKLIEEFIVVAIVCLIFL---FHLRSAFVAIITLPIGIFISFIIMNQQGINANIMSL 393

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR--------DLIDKSINETLGRSVYT 775
             +   IG  V+  +V+ +   K+++ +  +   +        +LI +S +E      ++
Sbjct: 394 GGIAIAIGAMVDAAIVMIENAHKHIERWKHAHPKQKIPSQEHWELIAQSASEVGPALFFS 453

Query: 776 SMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +   +S +P+          F   A    + +  AA  S+ I   ++ +       + +
Sbjct: 454 LLIITLSFIPVFTLEAQEGRLFAPLAFTKTYAMAAAAGLSVTIVPVLMGYFIRGWIPSEK 513


>gi|1731918|emb|CAA67084.1| membrane-bound cation-proton-antiporter [Cupriavidus metallidurans
           CH34]
          Length = 1063

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/603 (10%), Positives = 151/603 (25%), Gaps = 66/603 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L         + +      +  +D  P                 +++ ++V+   
Sbjct: 13  RWLVLLAVFGMAGLGIFS----YNRLPIDAVPDI---------------TNVQVQVNTSA 53

Query: 65  F------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                           + + + L          R   +++T+ F D          V   
Sbjct: 54  PGYSPLETEQRATYPIEVVMAGLPGLEQTRSLSRYGLSQVTVIFKDGTDVYFARQLVNQR 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRID 172
           +Q     L       +   +T      + +          D       +           
Sbjct: 114 IQEAKDNLPEGVVPAMGPISTGLGEIYLWTVEAEEGARKADGTAYTPTDLREIQDWVVRP 173

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           Q+       +         Q        RL     T   +       N++          
Sbjct: 174 QLRNVPGVTEINTIGGFNKQYLVAPSLERLASYGLTLTDVVNALNKNNDNVGAGYIE--- 230

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                G QYLV    +++                  + +I       +        ++  
Sbjct: 231 ---RRGEQYLVRAPGQVASED--------------DIRNIIVGTAQGQPIRIRDIGDVEI 273

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
              +           +           +     +      A +          +      
Sbjct: 274 GKELRTGAATENGKEVVLGTVFMLIGENSRAVSKAVDEKVASINRTMPEGVKIVTVYDRT 333

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                + +  K      A LV+++LF+ +   +  L+    I L ++ T   +     + 
Sbjct: 334 RLVDKAIATVKKNLLEGAVLVIVILFLFLGNIRAALITATIIPLAMLFTFTGMVNYKISA 393

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERI-----REENRKNQSVFCS-----LDMGFSRAYST 462
            L S+  +  GI   +D  +++ E         +    + +  S     +      A   
Sbjct: 394 NLMSLGALDFGII--IDGAVVIVENCVRRLAHAQEHHGRPLTRSERFHEVFAAAKEARRP 451

Query: 463 IFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +    +  +I  + +F      G      A T+ L++L +M  +++ V A +   I  + 
Sbjct: 452 LIFGQLIIMIVYLPIFALTGVEGKMFHPMAFTVVLALLGAMILSVTFVPAAVALFIGERV 511

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            +  +   L         +              ++   +C                +G I
Sbjct: 512 AEKENRLMLWAKRRYEPLLEKSLANTAVVLTFAAVSIVLCVAIAARLGSEFIPNLNEGDI 571

Query: 580 QLG 582
            + 
Sbjct: 572 AIQ 574



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 9/133 (6%)

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                 G  AL+  GI  ++TA    + L G +V + +V+   +R    +     S    +
Sbjct: 915  FALIGGILALWIRGIPMSITAAVGFIALCGVAVLNGLVMLSFIR---LVREEGHSLDSAV 971

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   L   + T++ A +  +PMA+    G  V    A  +  GI+ + + ++ +  P
Sbjct: 972  RVGALTRLRPVLMTALVASLGFVPMAIATGTGAEVQRPLATVVIGGILSSTALTLLVL-P 1030

Query: 819  ILLFIYDWRAKNA 831
            +L  +   + ++A
Sbjct: 1031 VLYRLAHRKDEDA 1043



 Score = 45.1 bits (104), Expect = 0.052,   Method: Composition-based stats.
 Identities = 30/173 (17%), Positives = 63/173 (36%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + ++I          AL   T + L +  T      + I  NL ++ A+    G 
Sbjct: 348 LEGAVLVIVILFLFLGNIRAALITATIIPLAMLFTFTGMVNYKISANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDR-MR------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            ++  VV+ +  +R      ++     T       +  +  E     ++  +   I  LP
Sbjct: 406 IIDGAVVIVENCVRRLAHAQEHHGRPLTRSERFHEVFAAAKEARRPLIFGQLIIMIVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    A  +   ++ A   S+ F+ A + LFI +    K  R+
Sbjct: 466 IFALTGVEGKMFHPMAFTVVLALLGAMILSVTFVPAAVALFIGERVAEKENRL 518


>gi|284926263|gb|ADC28615.1| integral membrane component of efflux system (multidrug efflux
           system CmeDEF) [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 1005

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/542 (11%), Positives = 153/542 (28%), Gaps = 50/542 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++ +  +   GL+ A    +        P     ++++      G  + V     
Sbjct: 8   RPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIKITSKVN------GDLNFV----- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S +        +     +   + F   +  E  A+ V   +  +
Sbjct: 57  ----ESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAANDVRDKIGTL 112

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L   P+   + + +   IS+ L            ++   EI  +    +   E   +
Sbjct: 113 --SLPSKPEIEKISSDSGSAISLFLY-------SKDKLQLMREINDKIKPFLQRVEGVGK 163

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  E  P++LR+       ++      N  +                 + 
Sbjct: 164 IEAKGFLEPQIRIELKPNQLRKYNLNALDVANIIKSQNFKQALGELNNNQDNYIIKGYFE 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  E+S + +                            F     NI           +
Sbjct: 224 ATNLEELSNLRIKT------------------------GVFLSDIANISSLYEDEKQSAL 259

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    I+       +L           +            S  
Sbjct: 260 YEGKEGVLLELGKITNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQV 319

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L L+++F+ +      L+A  +I  ++I T  ++ LLG  L   +   + L
Sbjct: 320 IFDMVLGIFLTLVIVFLFLRNLSTTLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTL 379

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLD--MGFSRAYSTIFDSNITALIATVVLFFF 480
            IG+ +D  I+V E I ++ +    +  +         +  +I    +   I    +   
Sbjct: 380 SIGIFIDDAIVVIENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSI 439

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G       I++   I+IS   ++ ++ ++    +  K+ K  +        +      +
Sbjct: 440 SGLFFNALGISVASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENL 499

Query: 541 QF 542
            +
Sbjct: 500 LY 501



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/200 (17%), Positives = 64/200 (32%), Gaps = 7/200 (3%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                      V   +     +I    +I         I + L +     V+   + ++I
Sbjct: 274 TNYNTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVI 333

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                      L A   +   I  T     L G + N     A+   IG  ++D +VV  
Sbjct: 334 VFLFLRNLSTTLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI- 392

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +N+     +          INE     +  S+      +P++      G    +  I
Sbjct: 393 ---ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGI 449

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +A GIV++   S+F+   I
Sbjct: 450 SVASGIVISFLVSVFLIPSI 469



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/256 (13%), Positives = 93/256 (36%), Gaps = 9/256 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +       +++  S++                KN  V++     D         ++    
Sbjct: 747 ISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQKLLLDNMD 806

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             +    ++         +  E ++   + V ++ + + + +   ++ +   L  + T+ 
Sbjct: 807 KILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFILPLIIMITMP 866

Query: 702 LDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           L     ++G F + G  F+L  + A++ L G    + +++ D      K     +     
Sbjct: 867 LAFGGASIGLF-ITGHNFSLFVLIAIILLFGMVGKNAILLVDVAN---KKCHEGLDPDKA 922

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  +    L   + T+ A   ++LP+A+    G       AI + FG++ +   ++ +  
Sbjct: 923 LLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLISSTLLTLLVVP 982

Query: 818 PILLFIYDWRAKNARI 833
            +  F +   +K  +I
Sbjct: 983 ALFKFCFKLDSKLRKI 998


>gi|148265491|ref|YP_001232197.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
 gi|146398991|gb|ABQ27624.1| acriflavin resistance protein [Geobacter uraniireducens Rf4]
          Length = 1050

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 75/574 (13%), Positives = 177/574 (30%), Gaps = 35/574 (6%)

Query: 1   MR---NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPK----NRISLGLDLRGG 53
           MR   ++        +   + L+      +    +D FP   P       IS+GL     
Sbjct: 2   MRWIVSSSLKFRFLVIAIAVALMYFGIGQIRNMPVDVFPEFAPPLVEVQTISIGL----- 56

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                       V   + +  +E  + L    +      +  + I + F           
Sbjct: 57  --------SAVEVEALVTIPLEEAFNGLPGLDVMRSKSVEQLSSIKMIFKPGTDLLLARQ 108

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
            V   +   +  L       +++         +    +        ++ SM      + +
Sbjct: 109 AVQERVALASPGLPTWAAPPVMLQPLSATSRCMKIGISSKN--RSVMDLSMITYWTIMQR 166

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +               +  +  E  P  L++   T  ++               F    +
Sbjct: 167 LLRVPGVANVAIWGERIQMMQVEVVPELLKKHGVTLDEVKEA-TASTLDVGLLQFVDGHI 225

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
             + G       ++ I   H+       D    + + ++       +         I   
Sbjct: 226 IGTGGWVDTPNQRLPI--RHVMPIIYKSDEVKPEALANVPVAVRNGKPLLLKDVAEIVID 283

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
              ++   ++        I       +     +        LR G   + ++    R   
Sbjct: 284 HQPMVGDAIINDGPGLLLIVEKFPWGNTLQVTKGVEAAIDALRPGLPDVDIDTTIFRPAT 343

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S         I + L++++LF  +   ++ L++  ++ L+++    +L L GAT+ 
Sbjct: 344 FIEMSLDNLSKALLIGSLLLVLILFFFLYEWRFALISCVAMPLSLVAAGLVLHLRGATIN 403

Query: 414 LPSIAGIVLGIGLAVDSNILVNERI-------REENRKNQSVFCSLDMGFSRAYSTIFDS 466
           +  +AG V+ +G  VD  I+  E I       R+  R+++S+   +          I  +
Sbjct: 404 VMILAGFVIALGDIVDDAIIDIENIVRRLREYRKSGRRDKSLARIILDASLEVRGAIVYA 463

Query: 467 NITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +  + A + +FF     G   +  AI+  L++L+SM  A+++  A+    +R   ++  
Sbjct: 464 TLIEVFAIMPVFFLKGLSGAFFKPLAISYALALLVSMIVALTVTPALAFLFLRNAPLEGR 523

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFS 557
           +   +         I    +R          +  
Sbjct: 524 ESPIVRWLQSSYVKILEPIIRTPRPAYFTVGVIV 557



 Score = 69.3 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 103/302 (34%), Gaps = 12/302 (3%)

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
             +    W    +    I  +  +         +    + + V   +P+ L  V   +  
Sbjct: 224 HIIGTGGWVDTPNQRLPIRHVMPIIYKSDEVKPEALANVPVAVRNGKPLLLKDVAEIVID 283

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
            Q         DG    L+  ++  G+++  T+ +E     +   +P   I  T      
Sbjct: 284 HQPMVGDAIINDGPGLLLIVEKFPWGNTLQVTKGVEAAIDALRPGLPDVDIDTTIFRPAT 343

Query: 661 ISRELIRKGIVGVIISAIAMLIYIWIR-FKWYFALGAITTLILDITKTLGFFALFGIEFN 719
                +      ++I ++ +++ ++   ++W FAL +   + L +        L G   N
Sbjct: 344 FIEMSLDNLSKALLIGSLLLVLILFFFLYEWRFALISCVAMPLSLVAAGLVLHLRGATIN 403

Query: 720 LTAVAAVLTLIG------YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           +  +A  +  +G          + +V   R+R+  K      S   +I  +  E  G  V
Sbjct: 404 VMILAGFVIALGDIVDDAIIDIENIV--RRLREYRKSGRRDKSLARIILDASLEVRGAIV 461

Query: 774 YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           Y ++    +++P+       G+     AI  A  ++V+   ++ +   +           
Sbjct: 462 YATLIEVFAIMPVFFLKGLSGAFFKPLAISYALALLVSMIVALTVTPALAFLFLRNAPLE 521

Query: 831 AR 832
            R
Sbjct: 522 GR 523



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 92/273 (33%), Gaps = 9/273 (3%)

Query: 559  CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
              + +     +   +     + + V     V L  V     +     +S +N     +  
Sbjct: 771  YDVNVWSIPAVRNSLTDVREMLIDVPGGGHVQLQNVADVRIAPTPNVVSHENLKRRIDVK 830

Query: 619  VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAI 678
              ++ +   S+       + K +         +   +         L    +  + I  +
Sbjct: 831  ANVKGRDLGSMVTDVKARLAKVEFPRGYFPELVGEYQERQTAQRNLLYVSIVAAIGIFFL 890

Query: 679  AMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
                +   R      L   + L+  +        L     +L ++   LT++G +  + +
Sbjct: 891  LQTSFGSFRLAMLSFLTLPSALVGGVLAA----YLGDRVISLGSLVGFLTILGVAARNGI 946

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG----SVI 794
            ++ D   ++++ +        L+ +   E +   + T++ + +++LP+ V G      + 
Sbjct: 947  MLIDHF-QHLERHEGEPFGPGLVLRGARERISPIMMTALTSALAILPLVVAGSIPGHEIE 1005

Query: 795  GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               A+ +  G+V +   ++F+   + L     +
Sbjct: 1006 HPLAVVVLGGLVTSTLLNLFVVPSLYLRFGRRK 1038


>gi|118462726|ref|YP_884094.1| MmpL11 protein [Mycobacterium avium 104]
 gi|118164013|gb|ABK64910.1| MmpL11 protein [Mycobacterium avium 104]
          Length = 1007

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/523 (13%), Positives = 174/523 (33%), Gaps = 68/523 (13%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL---PSIAGIVLGI 424
               ++LIVL  +        +        V++T+ L+ LL A  T+    +    + GI
Sbjct: 182 WNLPVILIVLLAVFGSLAAAAIPLALGICTVVVTMGLVYLLSAYTTMSVFVTSTVSMFGI 241

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            LAVD ++ +  R REE R  +    ++D   + +   +  S +T + +   ++     A
Sbjct: 242 ALAVDYSLFILMRFREELRSGRQPREAVDAAMATSGLAVVLSGMTVIASLTGIYVINTPA 301

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           ++  A    L++ ++M T+ ++  A +    R    +S  ++   R          +++ 
Sbjct: 302 LKSMATGAILAVAVAMLTSTTLTPAALATFGRAAAKRSALLHWSRRPESTQSKFWNRWIG 361

Query: 545 ARFWGVGISILFSICSICLLFTHGLNY---------------------------GIDFKG 577
                  +S L +   + ++     +                            G    G
Sbjct: 362 WVMRRPWMSALAASLVLLVMAAPAASMVLGNSLLRQFDSSHEIRAGVGAAAQALGPGALG 421

Query: 578 GIQLGVLANR----------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
            I++ +               V     R       +     Q  +   + L+        
Sbjct: 422 PIRVLINFPDGGAASPEHSHTVGAVRQRMAQAPNIVSVSPPQFAEDNGSALLSAVLSVDP 481

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYI 684
              + R      +     V  +     ++ GP    +     +     +++  +A++ ++
Sbjct: 482 EDMKARETVGWMRAELPKVSEAGTARVDVGGPTALIKDFDDRVSATEPLVLGFVALIAFV 541

Query: 685 WIR---FKWYFALGAITTLILDITKT---------------LGFFALFGIEFNLTAVAAV 726
            +       + AL  +   +L +                  LGF  +  I+  +  +  +
Sbjct: 542 MLLVSIHSVFLALKGVLMTLLSVAAAYGSLVMVFQWGWLRDLGFAQISSIDSTVPPL-VL 600

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G S++ ++ +  R+R+    +  S + RD +   +  T  R++ ++    I+V   
Sbjct: 601 AMTFGLSMDYEIFLLTRIRE---RFLHSGNTRDAVAYGV-STSARTITSAALIMIAVFVG 656

Query: 787 AVW-GGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
             + G  ++    +  A  I V      + +   ++     W 
Sbjct: 657 FAFAGMPLVAEIGVACAVAIAVDATVVRLVMVPALMAMFAQWN 699


>gi|58617210|ref|YP_196409.1| putative aminoglycoside efflux pump (acriflavine resistance protein
           D) [Ehrlichia ruminantium str. Gardel]
 gi|58416822|emb|CAI27935.1| Probable aminoglycoside efflux pump (Acriflavine resistance protein
           D) [Ehrlichia ruminantium str. Gardel]
          Length = 1039

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 62/547 (11%), Positives = 155/547 (28%), Gaps = 42/547 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  N   + L  +I   G              ++ P                  H VL+ 
Sbjct: 9   LERNRVSIFLLIVILIFGSYS-----YFDIAKEKNPEIKKPVL---------SIHTVLQG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    ++    +K         +     + L F+     +   D V   + 
Sbjct: 55  MSSEDIEKLVIYPIEQEVMSIKGVTKVTSLAKNGYANVILEFSAGFDDKEALDNVRSKVD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + +KL  +    ++       + ++      D       + +    R    ++    + 
Sbjct: 115 IIRAKLPQEATFPVVNQENLGLLPVLNIALTGDLPDRALFKIA----RNLQAKLEGLSNV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L     P+ +        ++    +  N         V   + +    
Sbjct: 171 QNVKIIGNRKDVLEINVSPNAINMYNLQVHEVINSILNNNQFINIGNLDVTSSKYALHVS 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L+++  +I                    V+I     G           +        + 
Sbjct: 231 GLLKNVQDI--------------------VNIPIKTDGYSIVTVGDVATVKLIYQNDTEI 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          S +   +   TI     +    +         I  +          +
Sbjct: 271 IRVNGQPSLVLEISKQPGKNILDTIFQIKDMIHNTKDVLPHNLSIIYLQDQSEEISDVLN 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +V+ L+++V+ MI +  K  L+   SI  + +L + ++ LLG TL +  +  +
Sbjct: 331 ELQ-NSILVSVLLVVVIMMIFMGTKTALLVAISIPGSFLLGIIVMYLLGYTLNIVILFSL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++ IG+ VD  I+V E    +         +        +  +  + +T L+  + L  +
Sbjct: 390 IMAIGMLVDDAIVVTEYADRKMINGLGRKEAFKQAAYDMFWPVASATLTKLVVYIPLLLW 449

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G  ++   I +  ++  S   A+  +  +   I +        I  +         
Sbjct: 450 PGTTGEFMKYIPIALITTLSASWIMALIFIPVLGSMIGKPSVTDKQSIAKIMAIETGKFT 509

Query: 538 IAIQFMR 544
              +F +
Sbjct: 510 NLGRFSK 516



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 53/138 (38%), Gaps = 5/138 (3%)

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           + I      AL    ++       +    L G   N+  + +++  IG  V+D +VV + 
Sbjct: 347 MMIFMGTKTALLVAISIPGSFLLGIIVMYLLGYTLNIVILFSLIMAIGMLVDDAIVVTE- 405

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
                +     +  ++   ++  +        ++   +  +P+ +W G+  G F   +  
Sbjct: 406 --YADRKMINGLGRKEAFKQAAYDMFWPVASATLTKLVVYIPLLLWPGTT-GEFMKYIPI 462

Query: 804 GIVVAASSSIFIAAPILL 821
            ++    S+ +I A I +
Sbjct: 463 ALIT-TLSASWIMALIFI 479



 Score = 40.1 bits (91), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 52/138 (37%), Gaps = 24/138 (17%)

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            + L +  T   F++        +   ++ L G  VN+ +++ D    N+   + +   +D
Sbjct: 896  VFLGLFVTNHVFSVV------MSGVGIIVLAGVIVNNNILLIDAFYANI---SNTNDKKD 946

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVIG--------------SFAIPMAFG 804
             I K+    L   + T +   + +LPM        +                 +  ++ G
Sbjct: 947  AIIKASISRLRPILLTVITGIVGLLPMVFRISFDFVNQRVIYNSPSSQLWCELSYTISIG 1006

Query: 805  IVVAASSSIFIAAPILLF 822
            +++A   ++F    +L+ 
Sbjct: 1007 LLLATVITLFFTPALLVL 1024


>gi|317404061|gb|EFV84518.1| cobalt-zinc-cadmium resistance protein czcA [Achromobacter
           xylosoxidans C54]
          Length = 1061

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/594 (9%), Positives = 145/594 (24%), Gaps = 58/594 (9%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----VN 67
            +   +G+         +  +D  P                   + + V    +      
Sbjct: 16  VLFVTLGVAAIGAYNYTRLAIDAVPDITN-------------VQVQINVGAPGYSPLETE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    + + + L          R   +++T+ F D          V   LQ     L 
Sbjct: 63  QRITYPIETVMAGLPGLQQTRSLSRYGLSQVTVIFKDGTDIYFARQLVNQRLQEAKESLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISH------AIEQSMEIIRQRIDQIGISESTI 181
                 +   +T      + +                  +           Q+       
Sbjct: 123 EGITPTMGPISTGLGEIYLWTVEAEPGAKKDDGSPYTPTDLREIQDWVIKPQLRNITGVT 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         +     +  RL     +   +                        D N  
Sbjct: 183 EINSIGGFAKEYQVAPNTERLASYGLSLTDIMAAL--------------------DRNNA 222

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V               A    ++   + D+    +  +        ++     +     
Sbjct: 223 NVGAGYIERKGEQYLIRAPGQVRSIDDIRDVVLTAVDGQAIRIRDVADVSIGRELRTGAA 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +           +     +        +     P    +           + + 
Sbjct: 283 TDNGQEVVLGTVFMLIGENSRSVSQAVSARIDAINKTLPPGIKAVTVYDRSNLIDKAIAT 342

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K      A LV+++LF+ +   +  L+    I L+++ T   +     +  L S+  + 
Sbjct: 343 VKKNLLEGATLVIVILFLFLGNIRAALITAMVIPLSMLFTFTGMVTYKVSANLMSLGALD 402

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVF----------CSLDMGFSRAYSTIFDSNITAL 471
            GI   VD  +++ E         Q               +      A   +    +  +
Sbjct: 403 FGII--VDGAVVIVENCVRRLSHAQEHQGRPLSRSERFHEVFAAAREARRPLLFGQLIIM 460

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           +  + +F      G      A+T+ L++L +M  +++ V A +   I  K  +  +   L
Sbjct: 461 VVYLPIFALTGVEGRMFHPMALTVVLALLGAMILSVTFVPAAVALFIGKKVSEKENRLML 520

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                    + +   R        ++  ++C +              +G I + 
Sbjct: 521 WAKRRYAPLLDLALRRTPLVLAAATLFVALCGVIAARMGSEFIPNLNEGDIAIQ 574



 Score = 52.8 bits (124), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 153/529 (28%), Gaps = 37/529 (6%)

Query: 2    RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            R    L      +   G++ A      +   +  P+    +     L + G + L   ++
Sbjct: 536  RTPLVLAAATLFVALCGVIAA------RMGSEFIPNLNEGDIAIQALRIPG-TSLSQSLE 588

Query: 62   EDDFVNGFLQMYSDELRSFLKKEGIGVFSM-----RQIQNKITLSFADSRF-KENIADKV 115
                +   L+    E+     + G    +            I L   D          ++
Sbjct: 589  MQKQLETRLKQKFPEIERVFARTGTAEIASDPMPPNISDGYIMLKPKDQWPAPRKTQAEL 648

Query: 116  TLFLQGVNSKLNVDPKK--NLLVTTTEKEISIVLSQNNID--QVISHAIEQSMEIIRQRI 171
               +Q   +++  +  +    +     + IS V S   +      +  + +S   + Q +
Sbjct: 649  LRAIQEEAARMPGNNYEFSQPIQLRFNELISGVRSDVAVKIFGDDNDVLNRSAAEVAQVL 708

Query: 172  DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
              I  +        +   ++ +    D +R  +   + A +                G+ 
Sbjct: 709  QAIPGASEVKIEQTTGLPVLTVN--IDRARAARYGLSLADVQDTL------------GIA 754

Query: 232  FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                  G  +  + + +I          +       P+     +      +  ++     
Sbjct: 755  IGGREAGTFFQGDRRFDIVVRLPETVRESIPALRKLPIALPRSEGQAQTAYIPLSEVASF 814

Query: 292  KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                                  + + +  G+F  +    LA  ++  +            
Sbjct: 815  DLAPGPNQISREDGKRRIVVSANVRGRDLGSFVADAEAALAEKIKVPAGYWTAWGGTFEQ 874

Query: 352  VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
            + +      I          LV  +LF +    K GL+    I   +   +  L L G  
Sbjct: 875  LQSAAQRLRIV---VPAALLLVFGLLFAMFGNIKDGLIVFTGIPFALTGGVISLWLRGIP 931

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            L++ +  G +   G+AV + +++   I       + +  ++  G       +  + + A 
Sbjct: 932  LSITAAVGFIALCGVAVLNGLVLLSFISSLRESGKPLDQAVREGALTRLRPVLMTALVAS 991

Query: 472  IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
            +  V +      G    R  A  +   I+ S    + ++ A+   + R 
Sbjct: 992  LGFVPMAIATGTGAEVQRPLATVVIGGIISSTILTLLVLPALYRLMHRK 1040



 Score = 42.4 bits (97), Expect = 0.31,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 82/256 (32%), Gaps = 19/256 (7%)

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             ++  + IG         +    V L          +R +        + +  +     
Sbjct: 265 IRDVADVSIGRELRTGAATDNGQEVVLGTVFMLIGENSRSVSQAVSARIDAINKTLPPGI 324

Query: 655 EIVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLG 709
           + V       LI K I  V       + + ++I          AL     + L +  T  
Sbjct: 325 KAVTVYDRSNLIDKAIATVKKNLLEGATLVIVILFLFLGNIRAALITAMVIPLSMLFTFT 384

Query: 710 FFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR-MR------KNMKLYTTSISFRDLID 762
               + +  NL ++ A+    G  V+  VV+ +  +R      ++     +       + 
Sbjct: 385 GMVTYKVSANLMSLGAL--DFGIIVDGAVVIVENCVRRLSHAQEHQGRPLSRSERFHEVF 442

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAP 818
            +  E     ++  +   +  LP+    G    +    A+ +   ++ A   S+ F+ A 
Sbjct: 443 AAAREARRPLLFGQLIIMVVYLPIFALTGVEGRMFHPMALTVVLALLGAMILSVTFVPAA 502

Query: 819 ILLFIYDW-RAKNARI 833
           + LFI      K  R+
Sbjct: 503 VALFIGKKVSEKENRL 518


>gi|296329043|ref|ZP_06871549.1| acriflavin resistance protein B [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296153847|gb|EFG94659.1| acriflavin resistance protein B [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 1020

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 73/618 (11%), Positives = 168/618 (27%), Gaps = 44/618 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++      IGLL            +  P+                        
Sbjct: 9   RRPVATTMVMVSFIFIGLLAMF-----SMKKELIPNIKIPVVT---------ITTTWTGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +     +  S +              + + ++F      +    ++   +  
Sbjct: 55  VSENVETQVTKKIKDSLSNVDAIDKIQTVSAYGVSNVVVNFDYGVDTDEKVTQIQREVSK 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + + L  D    L+        ++      I          +  I  Q   ++       
Sbjct: 115 IANNLPNDANTPLVRKIEVAGGNMTAI---IAFNADSKTALTTFIKEQLKPRLESLPGIG 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         QL  + +  +L     +  ++         +                   
Sbjct: 172 QVDIFGNPDKQLQIQVNSDKLASYNLSPMELYNIVRTSVATYPIGKLS------------ 219

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
                   +G          +        +I     G          +I        +  
Sbjct: 220 --------TGNKDMIIRFMGELDYIDQYKNILISSDG-NTLRLKDVADIVLTTEDADNVG 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            L        +    +          A  +   ++          +E         S S 
Sbjct: 271 YLNGKESVVVLLQKSSDGDTITLNNAAFKVIEEMKPYMPAGTEYSIEMDASENINSSISN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +      L  I+LF+ +   +  ++   ++ + +I T A LS+ G TL L S+ G+ 
Sbjct: 331 VSSSAIQGLVLATIILFIFLKSFRTTILISLALPVAIIFTFAFLSMRGTTLNLISLMGLS 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSV-FCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           +G+G+  D++++V + I     +  S    + +        ++  S +T ++  + + F 
Sbjct: 391 IGVGMLTDNSVVVVDNIYRHITELNSPVMEASENATEEVTFSVIASALTTIVVFLPILFI 450

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R  +  +  S L ++  AI+++  +    +  K MKS D     +       
Sbjct: 451 PGLAREFFRDMSYAIIFSNLAAIIVAITMIPMLASRFLNRKSMKSEDGRLFKKVKTFYLK 510

Query: 538 IAIQFMRARFWGVGISILFSICSICLLF--THGLNYGIDFKGGIQLGVLANRPVDLSVVR 595
           +  + +  +   V I  +    SI +              +G   L        DL+   
Sbjct: 511 VINKAISHKGLTVLIMAVLFFFSIFVGPKLLKFEFMPKQDEGKYSLTAELQNGTDLNKAE 570

Query: 596 SNLESLQIGDISFQNFDG 613
              + L+    S  +   
Sbjct: 571 RIAKELEEIIKSDPHTQS 588



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/205 (15%), Positives = 76/205 (37%), Gaps = 8/205 (3%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI-WI 686
           + A  +V+E +K  +      S   +           +    I G++++ I + I++   
Sbjct: 294 NNAAFKVIEEMKPYMPAGTEYSIEMDASENINSSISNVSSSAIQGLVLATIILFIFLKSF 353

Query: 687 RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
           R     +L         I  T  F ++ G   NL ++  +   +G   ++ VVV D +  
Sbjct: 354 RTTILISLALPVA----IIFTFAFLSMRGTTLNLISLMGLSIGVGMLTDNSVVVVDNI-- 407

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIV 806
              +   +    +  + +  E     + +++   +  LP+    G     F   M++ I+
Sbjct: 408 YRHITELNSPVMEASENATEEVTFSVIASALTTIVVFLPILFIPGLA-REFFRDMSYAII 466

Query: 807 VAASSSIFIAAPILLFIYDWRAKNA 831
            +  ++I +A  ++  +        
Sbjct: 467 FSNLAAIIVAITMIPMLASRFLNRK 491



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 86/244 (35%), Gaps = 7/244 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            D   V+ +  +             +              V    +   + ++   + P S
Sbjct: 762  DNKFVKLSDVATLQYAEGTSEIRKKNGIYTVTISGNDGGVGLGAIQSKIIEEFNNLNPPS 821

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
            T+  +     +  ++ + +    + IS   +   +  +F+ +   +  I ++ L +   +
Sbjct: 822  TVSYSWGGQTENMQKTMSQLSFALSISIFLIYALLASQFESFIMPIIIIGSIPLALIGVI 881

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
                +     ++  +  V+ L G  VN+ +V+ D ++    + T        I  S    
Sbjct: 882  WGLVILRQPIDIMVMIGVILLAGVVVNNAIVLIDFIK---TMRTRGYDKDYSIIYSCETR 938

Query: 769  LGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            L   + T+M     ++PMA+    G       AI + FG+  +   ++ +   +   +  
Sbjct: 939  LRPILMTTMTTVFGMIPMALGLGEGSEFYRGMAITVIFGLSFSTILTLVLIPILYSIVDS 998

Query: 826  WRAK 829
            + +K
Sbjct: 999  FTSK 1002


>gi|82523768|emb|CAI78512.1| heavy metal efflux pump [uncultured bacterium]
          Length = 1050

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 67/596 (11%), Positives = 164/596 (27%), Gaps = 46/596 (7%)

Query: 19  LLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELR 78
           +++   N +     + FP                    V      + V   + +  ++  
Sbjct: 21  IIVVGFNAMVHLKREAFPRVDFDIVT---------ITTVYPGAPAEDVEKLVTVPLEKEL 71

Query: 79  SFLKKEGIGVFSMRQIQNKITLSF-ADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVT 137
             +        +  +  + I +    ++R K++I D +   +  V        +  ++  
Sbjct: 72  KGISGINDMTSTSEEGLSTIGIEIDPEARDKKDIIDDIETAVDRVRDLPKEIREDPIVFE 131

Query: 138 TTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQ 197
                  ++    + D   S     + E      DQI                 +   E 
Sbjct: 132 LKADAYPVIEISLSGDFPESETRRYAEE----LEDQILEISDVSSVRRIAWRDPEYWVEV 187

Query: 198 DPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGA 257
           DP +L+    +  ++       N +  G          +           EI        
Sbjct: 188 DPDKLKDYHVSLDEIINALRTRNITIPGGQLTTEKDEYNVRITGEFRKPEEIE------- 240

Query: 258 TANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKA 317
                         I                 +            +        +     
Sbjct: 241 ------------DVIIRANDAGVSLRVKDVARVIDTYEDETHIPKVNGKRSVSMVVLKSK 288

Query: 318 QISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVL 377
           +      +E   ++    +          +             + +    I   LV+ +L
Sbjct: 289 EGDVLRVVEKVNVILEEFKQKLPEELEVTITNDISFYVKRRLGVLQVNGLIGLVLVIAIL 348

Query: 378 FMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNER 437
           F+ +      L+    + + +  T  ++ ++GA++ L ++ G+++ +G+ VD  I+V E 
Sbjct: 349 FLFL-DPIPALMTAVGLPIALFSTFGVMYMIGASINLVTMLGLIIVLGMLVDDGIIVAEN 407

Query: 438 IREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRGFAITMGL 494
           +     +      +   G S   + +  + +T   A   L F     G  VR   I + +
Sbjct: 408 VYRYVEEGMDPKEAAIKGTSDVIAPVTVTILTTCAAFSPLLFMEDLIGKFVRFIPIVVMI 467

Query: 495 SILISMFTAISIVRAMMIFIIR---------YKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           ++  S+  A  I+ + +   ++          K  K        + F           R 
Sbjct: 468 ALASSLVEAFIILPSHLSDFMKLGFNVNKGVRKPKKEKKWFVSLKTFYTRMLRGALNHRY 527

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
            F G  I +      +   F     +  +      +   A +   L+ +   +  +
Sbjct: 528 LFLGGMILLFAVTIFVAASFMRITMFSGEGIEYFYIRAEAKKGTPLAEMNKLIMPV 583



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 84/237 (35%), Gaps = 7/237 (2%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             +     G     + DG++   V  Q    ++ +    +++ KK                
Sbjct: 796  AVIEEAEGIYRINHLDGKRVIAVSAQVDEKNATSFGVNMDLQKKFKNITSKYPGYTIKYG 855

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
               +  +  ++  +    I+   + I +   F         +  +   I   +  F L G
Sbjct: 856  GEYEDQQRTLKNLLRSFAIAFFLIFIILAALFNSIIQPFIVMLAIPFGIVGVIFAFLLHG 915

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               +  A   ++ L G  VND +V+ D +    KL        + + ++    L   + T
Sbjct: 916  RPLSFFAFMGLVGLTGIVVNDSIVLVDFVN---KLRKEGKEKFESLIEAGGMRLRPVLMT 972

Query: 776  SMAAFISVLPMA--VWGGSV-IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            ++     ++ +A  + GG   +   A+ + +G+V + + ++ +   I     D+  K
Sbjct: 973  TITTIAGLVSVAYGIGGGDPFLKPMALAIVWGLVFSTNLTLILIPCIYAIADDFAEK 1029



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/258 (13%), Positives = 83/258 (32%), Gaps = 9/258 (3%)

Query: 581 LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
           + + AN       V+     +   +             V +           RV+E V  
Sbjct: 242 VIIRANDAGVSLRVKDVARVIDTYEDETHIPKVNGKRSVSMVVLKSKEGDVLRVVEKVNV 301

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI--- 697
            + E       +    +   IS  + R+  V  +   I +++ I I F +   + A+   
Sbjct: 302 ILEEFKQKLPEELEVTITNDISFYVKRRLGVLQVNGLIGLVLVIAILFLFLDPIPALMTA 361

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
             L + +  T G   + G   NL  +  ++ ++G  V+D ++V + +    +     +  
Sbjct: 362 VGLPIALFSTFGVMYMIGASINLVTMLGLIIVLGMLVDDGIIVAENV---YRYVEEGMDP 418

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIF 814
           ++   K  ++ +     T +    +  P+       G  +    I +   +  +   +  
Sbjct: 419 KEAAIKGTSDVIAPVTVTILTTCAAFSPLLFMEDLIGKFVRFIPIVVMIALASSLVEAFI 478

Query: 815 IAAPILLFIYDWRAKNAR 832
           I    L           +
Sbjct: 479 ILPSHLSDFMKLGFNVNK 496


>gi|114561454|ref|YP_748967.1| heavy metal efflux pump, CzcA family protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114332747|gb|ABI70129.1| heavy metal efflux pump, CzcA family protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 1047

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/590 (10%), Positives = 156/590 (26%), Gaps = 40/590 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +  +I    + +     +  + LD  P       I                     V   
Sbjct: 14  VMVLILTAVIALVGYQAMRMTPLDALPDLSDVQVI---------VKTSYPGQAPQLVEDQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L     +L   
Sbjct: 65  ITYPLSSAMLAVPGAKTVRGFSMFGDSFVYVIFEDGTDIYWARSRVLEYLSQTQDQLPDG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
              ++    +                     +           ++       +      +
Sbjct: 125 VTPSIGPDASGVGWIFQY-ALVDRNGQYDLAQLRSLQDWFLKLELQSVAGVSEVATVGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
                   DP +L         +       N+S  G +  +        +    +   + 
Sbjct: 184 EQTYQVVVDPHKLALYKIDLMTIKNALDNSNSSTGGSVIEMAEAEYMITSSGYRQTIADF 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           + + L   +    P   K V  +       R   E+                      + 
Sbjct: 244 AEVPLGILSETGTPVLMKDVAQLRTGPAARRGIAELDGK-----------------GEVV 286

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   +   +   TI         +  G       +         L S    K      
Sbjct: 287 GGIVVMRYGENALETINNVKQKLKEISNGLPDGVELVTTYDRSELILRSVDNLKHKVLEE 346

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V ++  + +L+ +  LVA  ++ ++++++   ++++G    + S+ GI + IG  VD
Sbjct: 347 MLVVGLICLLFLLHARSTLVAIITLPISILVSFIAMNIIGVNANIMSLGGIAIAIGAVVD 406

Query: 430 SNILVNERIREENRK----------NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF- 478
           ++I++ E   +                  +  +          +F S +   ++   +F 
Sbjct: 407 ASIVMVENTHKHLEHYRQKHGKAPEGDDHWQLVKEASIEVGPALFFSLLIITLSFTPVFA 466

Query: 479 --FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  S   AI+++  +M + +R K               I  
Sbjct: 467 LEAQEGRLFHPLAFTKTFAMAASAILAITLIPVLMGYFVRGKIPDERKNPISRVLIAIYQ 526

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +    +      +G++I+    +   L   G  +    + G  L +   
Sbjct: 527 PLLKWVLHFPKITIGLAIIVLFSAYYPLSQMGSEFMPTLEEGDLLYMPTT 576



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/171 (14%), Positives = 61/171 (35%), Gaps = 14/171 (8%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  I +L  +  R      L AI TL + I  +     + G+  N+ ++  +   IG
Sbjct: 347 MLVVGLICLLFLLHAR----STLVAIITLPISILVSFIAMNIIGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDR-------MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ +         R+             L+ ++  E      ++ +   +S  
Sbjct: 403 AVVDASIVMVENTHKHLEHYRQKHGKAPEGDDHWQLVKEASIEVGPALFFSLLIITLSFT 462

Query: 785 PMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+         +    A    F +  +A  +I +   ++ +    +  + R
Sbjct: 463 PVFALEAQEGRLFHPLAFTKTFAMAASAILAITLIPVLMGYFVRGKIPDER 513


>gi|331666921|ref|ZP_08367795.1| heavy metal RND efflux transporter, CzcA family [Escherichia coli
           TA271]
 gi|331066145|gb|EGI38029.1| heavy metal RND efflux transporter, CzcA family [Escherichia coli
           TA271]
          Length = 495

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/502 (10%), Positives = 122/502 (24%), Gaps = 40/502 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVLMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       L    T                     +           ++       
Sbjct: 117 VQGKLPAGVSAELGPDATGVGWIYEY-ALVDRSGKHDLADLRSLQDWFLKYELKTIPDVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ +     DP RL Q   + A++       N    G    +           
Sbjct: 176 EVASVGGVVKEYQVVIDPQRLAQYGISLAEVKSALDASNQEAGGSSIELAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +   E G   +          P        
Sbjct: 236 YLQTLDDFN------------------HIVLKASENGVPVYLRDVAKVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVIAAVKDKLETLKSSLPEGVEIVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
             G       +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSGKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N++ +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWQHQHPDATLDNKTRWQVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFFFGGGAVRGFAITM 492
            ++ + +F   G   R F    
Sbjct: 458 TLSFIPIFTLEGQEGRLFWPVW 479


>gi|270295991|ref|ZP_06202191.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273395|gb|EFA19257.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 1040

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 74/620 (11%), Positives = 179/620 (28%), Gaps = 35/620 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWDTDIYLARQIVSEKLAVV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L  +  K  L   +     +++     D      ++           ++  +    Q
Sbjct: 118 SESLPANVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +   + DP R+R    T +++        N          +  +      L
Sbjct: 176 VAVLGGDIKEYQVQLDPERMRHYGVTLSEVMN-ITREMNLNANGGVLYEYGNEYIVRGVL 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             DKV+               +  K VV  +          ++    +G  L  +     
Sbjct: 235 STDKVD---------------QIAKAVVRSNGVSGAPILLEDIADVQVGAKLPKLGTASE 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +    A  +   T +    L  + +     +K++    R       S    
Sbjct: 280 RGKHAVLLTVTKQPATSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +       V+IVLF+ +   +  +++  ++ L++I ++  L  +G T+   S+ G+ +
Sbjct: 340 QKSLLEGGIFVVIVLFLFLTNIRTTVISLVTLPLSLIASILALHYMGFTINTMSLGGMAI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +   +N+         +   +          I +S +  +++ 
Sbjct: 400 AIGSLVDDAIVDVENVYKRLHENRLKPAGEQLPILEVVFNASKEVRMPILNSTLIIIVSF 459

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI------DI 525
           V LFF     G  +    I   +++  S   A+++   +  +++  +K K          
Sbjct: 460 VPLFFLSGMEGRMLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKTKKQNNENSDSA 519

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +       +    G   LF +   C             +G   + + +
Sbjct: 520 VARKMKQWYGSALTFVLGHKKGVLGGTIGLFVVALGCFFTLGRSFLPPFNEGSFTINISS 579

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              + L          +   +S            R +            +E   +     
Sbjct: 580 LPGISLEESDKMGHRAEELLLSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRS 639

Query: 646 VPLSTIQNTEIVGPKISREL 665
                 +  E +G  +   +
Sbjct: 640 RSELVAEVREKLGTIVGANV 659



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 75/219 (34%), Gaps = 11/219 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +  + ++ K    ++   + I             + +  + G I   I +
Sbjct: 295 TSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNVQKSLLEGGIFVVIVL 354

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++         + ++ TL L +  ++      G   N  ++  +   IG  V+D +V 
Sbjct: 355 FLFLT---NIRTTVISLVTLPLSLIASILALHYMGFTINTMSLGGMAIAIGSLVDDAIVD 411

Query: 740 ---VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
              VY R+ +N +K     +   +++  +  E     + +++   +S +P+    G    
Sbjct: 412 VENVYKRLHENRLKPAGEQLPILEVVFNASKEVRMPILNSTLIIIVSFVPLFFLSGMEGR 471

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++    I     +  +   ++ +   +  ++        
Sbjct: 472 MLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKTKK 510



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 80/222 (36%), Gaps = 9/222 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N   ++      +    R +    +   +             G +   E      + +  
Sbjct: 816  NVKRKIVISANVADRDLRSVVNDIQAQVDAQIKLPEGYHIEYGGQFESEQAASRTLALTS 875

Query: 676  SAIAMLIYIWIRFKWY-FALGAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGY 732
                ++I++ +  ++      AI  + L +    G FAL     E ++ A+   ++L G 
Sbjct: 876  FMSIVVIFLLLYHEFRNVKESAIILINLPLALIGGVFALLITTGEMSIPAIIGFISLFGI 935

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG- 791
            +  + +++      N           D + +   + L   + T++++ ++++P+A+ G  
Sbjct: 936  ATRNGMLLISHY--NHLQQEEGYGVYDSVIRGSLDRLNPILMTALSSALALIPLALSGDL 993

Query: 792  ---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                +    A  +  G++ +   + FI   + L ++  +   
Sbjct: 994  PGNEIQSPMAKVILGGLLTSTFLNGFIIPIVYLMMHHNQQPK 1035


>gi|253583472|ref|ZP_04860670.1| translocase subunit SecD [Fusobacterium varium ATCC 27725]
 gi|251834044|gb|EES62607.1| translocase subunit SecD [Fusobacterium varium ATCC 27725]
          Length = 410

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 30/166 (18%), Positives = 73/166 (43%), Gaps = 4/166 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  +  E I +     I + I + +++ + +K    + A   LI+    T G        
Sbjct: 228 GASLGDESIAQSKQAAIFAMILIGVFMIVFYKLP-GIVANIALIIFGLITFGCLNFIDAT 286

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++   G +V+  V++++R+++ ++L     + R+ ID   ++       +++
Sbjct: 287 LTLPGIAGLILSAGMAVDANVIIFERIKEELRL---GNTIRNAIDAGFSKGFVAIFDSNL 343

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              I  + +  +G   +  FA+ +  G + +  ++I I   +LL  
Sbjct: 344 TTLIITVILFTFGTGPVKGFAVTLTIGTLASMFTAITITKILLLTF 389



 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 139/372 (37%), Positives = 224/372 (60%), Gaps = 22/372 (5%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +    +    +   A+ + +E++ +RI+ +G++ES +Q+ GS+R++I+LPG  +    
Sbjct: 40  VVLEAVPDEGVTLDDAAMNRLIEVLDRRINGLGVAESVVQKAGSNRVIIELPGINNTEDA 99

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            +++G TA + F                        N      +  ++G  L  A  ++ 
Sbjct: 100 IKMIGKTALLEFKL---------------------ENPDGTLGETLLTGGALKKADVSY- 137

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +P +    ++ GA +F E+TR+NIGK LA+ LDG+V TAP IN  IPSG   I+GN
Sbjct: 138 DNLGRPQIQFEMNQEGAVKFAEITRNNIGKKLAITLDGKVQTAPTINSEIPSGNGVITGN 197

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           +T+E A   A +L AG+LP+K  IVE R VGA LG +SI +   A +  ++LI +FMIV 
Sbjct: 198 YTVEEAKATATLLNAGALPVKAEIVETRTVGASLGDESIAQSKQAAIFAMILIGVFMIVF 257

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G+VA+ ++ +  ++T   L+ + ATLTLP IAG++L  G+AVD+N+++ ERI+EE 
Sbjct: 258 YKLPGIVANIALIIFGLITFGCLNFIDATLTLPGIAGLILSAGMAVDANVIIFERIKEEL 317

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R   ++  ++D GFS+ +  IFDSN+T LI TV+LF FG G V+GFA+T+ +  L SMFT
Sbjct: 318 RLGNTIRNAIDAGFSKGFVAIFDSNLTTLIITVILFTFGTGPVKGFAVTLTIGTLASMFT 377

Query: 503 AISIVRAMMIFI 514
           AI+I + +++  
Sbjct: 378 AITITKILLLTF 389



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 21/129 (16%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
            + L  ++    + ++                       LGLDL+GG ++VLE   D+  
Sbjct: 8   RLSLVIVVVIGAIWLSFF-----------------KPTKLGLDLKGGVYVVLEAVPDEGV 50

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGV 122
              +  +    + L   +   G+    +++   N++ +        E+    +       
Sbjct: 51  TLDDAAMNRLIEVLDRRINGLGVAESVVQKAGSNRVIIELPGINNTEDAIKMIGKTALLE 110

Query: 123 NSKLNVDPK 131
               N D  
Sbjct: 111 FKLENPDGT 119


>gi|254283969|ref|ZP_04958937.1| RND family efflux transporter [gamma proteobacterium NOR51-B]
 gi|219680172|gb|EED36521.1| RND family efflux transporter [gamma proteobacterium NOR51-B]
          Length = 1047

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 66/525 (12%), Positives = 153/525 (29%), Gaps = 44/525 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R      ++  +I   G+   L        +   P                     L   
Sbjct: 19  RRPWLTAVMNLLIAVAGIAALL-----AIEVRELPDVDRPIV---------NVRTTLPGA 64

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + ++  +    +   + +        S  +  +++ + F      +  A  V   +  
Sbjct: 65  SPETMDAEVTRILEGAVARVSGATEISSSSEENNSRVRVEFGPGSDVDRAAADVREAVSR 124

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  + ++  +    E    IV      D  I    + +  + +  +          
Sbjct: 125 VAQDLPENVEQISVFKADEDAEEIVRIAIRSD--IYGEEKLARIVDKDIVPAFISLPGVA 182

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                      L    DP R+     T A ++              F     +       
Sbjct: 183 DVPTFGARDRILRIILDPLRMTSYGLTVADLAEVLRRAPLDVPAGSFRSGDQQLLVRANA 242

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            V  + +I+ + +                                   +    A   +  
Sbjct: 243 KVTSEEDIAALQIRD------------------------EVRVGDIARVAFTPADPENIV 278

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +       +A  +     +      A L      ++L  +   +     G+ + 
Sbjct: 279 RFNGERVVGIGVVRQAGSNTIEISDGVNRAIAALNQRLEGVELIKIS-DDALFIRGAVAE 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              T A+   +V+  + +        L+   +I ++++ TLA+  +LG ++ + ++  +V
Sbjct: 338 VIKTLAVSILVVIATIRLFTGSMLLTLIPALAIPVSLLGTLAISWILGFSINILTLLALV 397

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  GL VD  I+V E I+    +      +  +G  + +  +  +    +   + + F  
Sbjct: 398 LATGLIVDDAIVVLESIQRRRAEGSGSSAAAVVGTHQVFFAVIATTAVLVAVFIPIAFLP 457

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   R F + +  ++ IS F A+S+V A M  +      K  
Sbjct: 458 GTAGRLFREFGLVLSAAVAISSFVALSLVPAAMSRLAFQTPRKRR 502



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 59/168 (35%), Gaps = 7/168 (4%)

Query: 670 IVGVIISAIAMLIYI-WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
           I  + +S + ++  I          L     + + +  TL    + G   N+  + A++ 
Sbjct: 339 IKTLAVSILVVIATIRLFTGSMLLTLIPALAIPVSLLGTLAISWILGFSINILTLLALVL 398

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             G  V+D +VV + +    +                ++     + T+       +P+A 
Sbjct: 399 ATGLIVDDAIVVLESI---QRRRAEGSGSSAAAVVGTHQVFFAVIATTAVLVAVFIPIAF 455

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
             G+       F + ++  + +++  ++ +    +  +     +  R+
Sbjct: 456 LPGTAGRLFREFGLVLSAAVAISSFVALSLVPAAMSRLAFQTPRKRRL 503



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/170 (14%), Positives = 62/170 (36%), Gaps = 9/170 (5%)

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF--GIEFNLTAVA 724
            R  ++    +   + + +  +F+   +   +  LI+         ALF      N+ +  
Sbjct: 851  RDTLITFCFALFIVFLVLVAQFESLTS-ALVIMLIVPFGIAAAVVALFITDTSLNIYSQV 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             ++ LIG    + +++ +   +         S +  I ++        V T ++  +  L
Sbjct: 910  GLVMLIGLIAKNGILLVEFADQER---DAGASVKAAIIEAATLRSRPIVMTMISTVLGAL 966

Query: 785  PMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            P+ +    G     +    +  G+ +A   ++++   I L+I       A
Sbjct: 967  PLVLASGPGSEARMAVGWVVFGGLGLATVFTLYLTPVIYLWIAPLSKPRA 1016


>gi|254563177|ref|YP_003070272.1| multidrug efflux pump [Methylobacterium extorquens DM4]
 gi|254270455|emb|CAX26455.1| multidrug efflux pump [Methylobacterium extorquens DM4]
          Length = 1076

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 53/544 (9%), Positives = 147/544 (27%), Gaps = 38/544 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++      +L  ++   G+   +            P  +       GL            
Sbjct: 8   LKFRITTYVLAVLMMLGGVSAIVVTPKDVLPAVDIPVVVVVWT-YTGL------------ 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              +            + + +        +  Q  + + + F  S   +    +V     
Sbjct: 55  SAPEMEKRITTYSEFGISNNVNNIARMESTSLQGTSVMKIYFDQSVSIDLAIAQVVSSTN 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + +    +  ++V  +   + ++              +       +   ++     +
Sbjct: 115 SIRALMPPGVQPPVIVRFSASSVPVIQLALTSA--KDSLNKVYDYAQYRIRQRLTQVPGS 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+  + D   L+ L  T  +++      N +    +  +          
Sbjct: 173 TLPSPFGGAPRQVMVDLDLHALQALGMTPLEVTNAVTSQNLTIPSGLAKI---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N  P     + +I    +  +         +       ++ 
Sbjct: 223 ----------GEQQYPVQMNATPDAIAALNEIPIKVVNGQPVLVRDVAYVRDGGPPQVNV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              S    +         +RA +                  +  
Sbjct: 273 VRADGAASVLMRVLKNGTASTLDVVNNVKAALPDIRAAAPEGMEIKPLFDQSVFVSNAIE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I A L  + + + +   +  L+   SI L ++ +LALL+ LG T+ + ++ G+
Sbjct: 333 GVWHEAVIAAALTGLTILLFLGSWRSTLIVLVSIPLCLMTSLALLAALGHTINVMTLGGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L +G+ VD   +  E       + +    ++  G +        S ++   A V +F  
Sbjct: 393 ALAVGILVDDVTVAIENTYRLFEEGKPFRNAVVEGAAGIAKPALISTLSICAAFVSVFAL 452

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
                      A+ +  ++L S     ++V  M+  ++  + ++       +      + 
Sbjct: 453 TDTPKYLFTPQALAVVFAMLTSYLLTRTLVPVMIDVLVAREYLQHHGGEADAPRRGRIER 512

Query: 538 IAIQ 541
             + 
Sbjct: 513 ALVW 516



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 87/232 (37%), Gaps = 7/232 (3%)

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                   + + +  F V    Q  D  A  R ++ +  +  + +P     +       + 
Sbjct: 843  PTQTVINHVNTQPTFNVYAAVQDRDLGAVARDIDRIVAEEQKTLPAPDKISVRGQIENMR 902

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
                R GI G+ I+ +A+ + + + +  W      +  L +     +    + G  F++ 
Sbjct: 903  AAFFRLGI-GLGIAVVAVYLLMAVNYQSWGDPFVVLAALPVAFCGIVASLFITGTAFSIP 961

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            ++   +  +G +  + +++    ++      T  S R+    +    L   + T+ A F+
Sbjct: 962  SLFGAIMSVGIASANSILLVTFAKE--HREATGCSAREAAIVAGETRLRPVLMTASAMFL 1019

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++PMA+    GG    + A  +  GI +   S++     +   +    AK 
Sbjct: 1020 GLVPMALGTGEGGEQNAALARAVMGGIALGTPSTLLFVPFLYSLLRRGEAKP 1071



 Score = 61.2 bits (146), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 85/278 (30%), Gaps = 5/278 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              +   +         +  +     I     I + V+  +PV +  V    +       
Sbjct: 212 NLTIPSGLAKIGEQQYPVQMNATPDAIAALNEIPIKVVNGQPVLVRDVAYVRDGGPPQVN 271

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +        +  L+     ++     ++     I    P                  I
Sbjct: 272 VVRADGAASVLMRVLKNGTASTLDVVNNVKAALPDIRAAAPEGMEIKPLFDQSVFVSNAI 331

Query: 667 RKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                  VI +A+  L  +     W   L  + ++ L +  +L   A  G   N+  +  
Sbjct: 332 EGVWHEAVIAAALTGLTILLFLGSWRSTLIVLVSIPLCLMTSLALLAALGHTINVMTLGG 391

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  V+D  V  +      +L+     FR+ + +        ++ ++++   + + 
Sbjct: 392 LALAVGILVDDVTVAIEN---TYRLFEEGKPFRNAVVEGAAGIAKPALISTLSICAAFVS 448

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +     +    F  P A  +V A  +S  +   ++  +
Sbjct: 449 VFALTDTPKYLF-TPQALAVVFAMLTSYLLTRTLVPVM 485


>gi|229158997|ref|ZP_04287053.1| Swarming motility protein swrC [Bacillus cereus ATCC 4342]
 gi|228624416|gb|EEK81187.1| Swarming motility protein swrC [Bacillus cereus ATCC 4342]
          Length = 1038

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 194/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDISLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++      +       V  ++   M       +      K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASGPGSQNAGASTQVPQMNPAAMTGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRVLAWALNHKIITSSIAILLLVGSLALVPVIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|256822523|ref|YP_003146486.1| CzcA family heavy metal efflux pump [Kangiella koreensis DSM 16069]
 gi|256796062|gb|ACV26718.1| heavy metal efflux pump, CzcA family [Kangiella koreensis DSM
           16069]
          Length = 1040

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 66/592 (11%), Positives = 162/592 (27%), Gaps = 40/592 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN  ++++   M+  IGL       L  + +D  P       I                 
Sbjct: 11  RNRFFVLLATLMLVGIGLYS-----LKNTPVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F +         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTSMLSVPGAVTVRGYSFFGDSYVYVIFDEDTDAYWARSRVLEYLSQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L    +  L    T      +              +           ++       
Sbjct: 117 VAPTLPTSARPQLGPDATGVGWVYLY-ALVDRTGKHDLSQLRSLQDWFLKYELQTVPGVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q   + +P +LR      + +       N      +  +           
Sbjct: 176 EVSSLGGMVKQYQVKVNPEKLRAFGIPLSHIQTAIKRGNQEVGASVIEMAEAEYMIRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   ++                    + +  D  G         +    P        
Sbjct: 236 YIQGIEDL------------------ATIPLGVDSNGTPLLLRDVAEIEVGPQIRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +         I   +   +   TI         L+AG       +      G    +   
Sbjct: 278 LNGEGETVGGIVVMRIGENAQKTINGVKAKLEKLKAGLPEGVEVVTVYDRSGLIERAVEN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  S+ + ++    ++   G    + S+ GI 
Sbjct: 338 LWHKLLEEFLVVALVCMIFLFHIRSSLVAIISLPVGILTAFIVMHWQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           + IG  +D  I++ E + +   +    +++ +  +    +     +F S +   ++ V +
Sbjct: 398 IAIGAMIDGAIVMIENMHKHMERTPLTDKNRWQIVTESAAEVGPALFFSLLIITVSFVPV 457

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G      A T   ++  S   A+++V  +M + IR K +             +
Sbjct: 458 FTLEAQEGRMFSPLAFTKTYAMAASAALAVTLVPVLMGYFIRGKILPENKNPINRVLTGL 517

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                   +R     + +++L ++     +   G  +  +   G  + +   
Sbjct: 518 YMPALKTVLRFPKVTLALALLLTLVGFWPVNKIGSEFIPNLDEGDLMYMPTT 569



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 91/275 (33%), Gaps = 20/275 (7%)

Query: 567  HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
                   +  G + +   + + + L+ V           I  +N        V ++    
Sbjct: 767  QDYRNSPEQIGLLPIVTSSGQRIALADVAKIYVEDGPPAIKSENARLNGWTFVDIENVDV 826

Query: 627  DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWI 686
             +  +  +  + ++         T         +   +L    +V + +  I +L+Y+  
Sbjct: 827  GTYVKAAMETVQQRLDLPAGYSVTWSGQYEYMLRAKEKLTY--VVPLTLLIIIVLLYMNF 884

Query: 687  RFKWYFALGAIT--TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV---- 740
            R    FA  AI   TL L +  +     L G  F++      + L G +V   V++    
Sbjct: 885  R---SFAEVAIIMGTLPLAMIGSFWLMYLLGYNFSVAVGVGFIALAGVAVEIGVIMLVYL 941

Query: 741  ---YDRMR---KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGG 791
               Y RM+   +              +     + +   + T+ A  + +LP+      G 
Sbjct: 942  NQAYVRMQIECEAEGTTPKRDELHHAVLHGAGQRVRPVMMTAAAIVVGLLPIMYGSGTGS 1001

Query: 792  SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             V+   A PM  G++ A   ++ +   +     + 
Sbjct: 1002 EVMSRIAAPMVGGMLSAVLLTLLVLPAVYFLWRER 1036



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/128 (15%), Positives = 47/128 (36%), Gaps = 9/128 (7%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
             +  L+ +   F    +L AI +L + I          G+  N+ ++  +   IG  ++
Sbjct: 346 FLVVALVCMIFLFHIRSSLVAIISLPVGILTAFIVMHWQGLNANIMSLGGIAIAIGAMID 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
             +V+     +NM  +       D     ++ +S  E      ++ +   +S +P+    
Sbjct: 406 GAIVMI----ENMHKHMERTPLTDKNRWQIVTESAAEVGPALFFSLLIITVSFVPVFTLE 461

Query: 791 GSVIGSFA 798
                 F+
Sbjct: 462 AQEGRMFS 469


>gi|157375957|ref|YP_001474557.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
 gi|157318331|gb|ABV37429.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
          Length = 1027

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 79/683 (11%), Positives = 191/683 (27%), Gaps = 61/683 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      + +  I   GL  +         L+ FP              +    +  +  
Sbjct: 9   KRPVTTSMFFVAILLFGLASS-----RLLPLEMFPGIDMP---------QVNIEVPYKGS 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    +E  + +        S  Q   +I L     +     + +    +  
Sbjct: 55  TPAEVERDITSVLEESLATMGGIEELRSSSSQNGAEIELRMKWGQNVATKSLEAREKIDA 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V   L  D ++  +   +  ++ ++  + + D+ +S A +      +Q    +   E   
Sbjct: 115 VRHLLPKDVERVFIRQFSTADMPVLNLRISSDRELSGAFDLLD---KQLKRPLERVEGVS 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           Q         Q+    +  +L     +   ++      N      +            + 
Sbjct: 172 QVTLYGVEQKQIEIRVNADKLSASNISIQALTRRLQQENFVISAGILRTDSRVYQVSPKG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
              +  EIS + L                                   +   L   LDGR
Sbjct: 232 EFRNLDEISNLVLT------------------------PGVTLGDIATVSFSLPERLDGR 267

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE-RNVGADLGSDS 360
            L            ++  +     +    +    +       + +            S  
Sbjct: 268 HLDQNYAVGLDVFKESGANLVEVSKRVMKVIENAKKDQQFQGIKLYVMEDQAYGVTSSLE 327

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I A L   VL++ +   K  LV   S+ +++ +TLA + LLG +L + S+ G+
Sbjct: 328 DLLTAGLIGALLSFAVLYLFLRNLKMTLVVVTSVPISICMTLAAMYLLGYSLNILSMMGL 387

Query: 421 VLGIGLAVDSNILVNERIREENR--------------KNQSVFCSLDMGFSRAYSTIFDS 466
           +L +G+ +D+ ++V E + +E +               ++    ++  G  +    +   
Sbjct: 388 LLAVGMLIDNAVVVTESVLQEKQAQAKGQSLGQSTDSCDEQDDDAVLTGVDKVALAVLAG 447

Query: 467 NITALIATVVLFFFG----GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            +T  I  +   F         +   AI + +S+  S+  A +++  M+  +      + 
Sbjct: 448 TLTTAIVFLPNIFGVKVELTIFLEHVAIAICISLAASLLVAKTLLPLMLSRMHFEIDTQK 507

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +    S +      I +   R         +  +   + ++     +   + K  I   
Sbjct: 508 RESKLRSYYHRSLKWI-LSHPRISGVIALCMLASTALPLNMVKQDQSDGEGNNKLYINYQ 566

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V     +D++          +     +                   +    V   +K   
Sbjct: 567 VEGRHSLDVTEAMITKMEDYLYANQDKFQIDSVYSYFSADRGQSTLILNEDVEIDMKALK 626

Query: 643 TEIVPLSTIQNTEIVGPKISREL 665
             I       +          + 
Sbjct: 627 KSIREGFPKFSIAKPQFGWGSDN 649



 Score = 78.2 bits (190), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 86/255 (33%), Gaps = 14/255 (5%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +  +  V      + +E L   D            +           AQ ++ + ++  
Sbjct: 760  VIRIDNRVYTLDSLAKIEILPRFDTIRHYDRQTALSIGANLDDLTTEEAQEKITQALETI 819

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
                    +++       +    +       ++++   + I +   F+        IT++
Sbjct: 820  NFPAGYGYSLRGGFQKQDEDEAVMATN----MLLAIAMIYIVMAALFESLLLPTAIITSI 875

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            +  IT         G   ++ A+  +L L+G  VN+ +V+ D++ +              
Sbjct: 876  LFSITGVFWALLFTGTPMSIMAMIGILILMGIVVNNGIVLVDQINQLSPDLDKLSDTISE 935

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIGSFAIPMAFGIVVAASSSIF 814
            +  S    L   + T     + ++P+A+       GG      AI +  G+  +  +S++
Sbjct: 936  VCHS---RLRPVLMTVGTTVLGLVPLAMGDTQLGGGGPSYSPMAIAIIGGLTFSTVTSLY 992

Query: 815  IAAPILLFIYDWRAK 829
            +       +Y  R +
Sbjct: 993  LVPLCYQALYRMRFR 1007



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 91/231 (39%), Gaps = 23/231 (9%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                       +    K +  + + L  +++          +L+  G++G ++S     
Sbjct: 286 NLVEVSKRVMKVIENAKKDQQFQGIKLYVMEDQAYGVTSSLEDLLTAGLIGALLSFAV-- 343

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +Y+++R      L  +T++ + I  TL    L G   N+ ++  +L  +G  +++ VVV 
Sbjct: 344 LYLFLR-NLKMTLVVVTSVPISICMTLAAMYLLGYSLNILSMMGLLLAVGMLIDNAVVVT 402

Query: 742 DRMRKNMKLYTTSISF-----------RDLIDKSINETLGRSVYTSMAAFISVLPMAVWG 790
           + + +  +      S             D +   +++     +  ++   I  LP  ++G
Sbjct: 403 ESVLQEKQAQAKGQSLGQSTDSCDEQDDDAVLTGVDKVALAVLAGTLTTAIVFLP-NIFG 461

Query: 791 GSV-IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW-------RAKNARI 833
             V +  F   +A  I ++ ++S+ +A  +L  +          + + +++
Sbjct: 462 VKVELTIFLEHVAIAICISLAASLLVAKTLLPLMLSRMHFEIDTQKRESKL 512


>gi|172056559|ref|YP_001813019.1| acriflavin resistance protein [Exiguobacterium sibiricum 255-15]
 gi|171989080|gb|ACB60002.1| acriflavin resistance protein [Exiguobacterium sibiricum 255-15]
          Length = 1034

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 79/685 (11%), Positives = 189/685 (27%), Gaps = 37/685 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N+  + I+  ++   G+         Q  +D+FP              +     V   
Sbjct: 9   LKNSVAVFIIAILLVLGGVYS-----FSQLKVDQFPEIEFP---------QISVEAVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D V+  +    +     ++       S  +    I + F      + +  ++   +Q
Sbjct: 55  ASPDDVDKQVVSKLETALKGIEGSTKITSSAYESIGIINIEFPFDTDMDKVEQQIDAAIQ 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             N  L  +    L    +     I               E    +  +   ++      
Sbjct: 115 DAN--LPEEATTKL-NRFSFGSFPIYNISFFSKDGK----EIESLLKNEIEPELNKIPGI 167

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       +    D  +      + + +         S           +     +
Sbjct: 168 NSVSVGGYKDDLVQITVDNKKATAAGLSLSSIKEQINAKYVSFPSGQLAEGDSKIPIRVE 227

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +E+  ++  + L  + A+      +     S    GA        +         +  
Sbjct: 228 EKLENLDKLKNLQLTSSVASGAASGGQGQPAQSGPPAGATGETGAPTEQAEPVRLSDIAT 287

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIE------TAGILAAMLRAGSLPIKLNIVEERNVGA 354
               +    +     K  +S   T +              +           +   +   
Sbjct: 288 IEAVSKQSEKTRYDLKDSLSMAITKKQDANTVEIADGVTKILNKYDDQIDYTIGIDSAKD 347

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S +       + A    + + + +   +  ++A  SI L++++    L+    +L +
Sbjct: 348 IEESVATLVKEGLLGALFASLAVLLFLRNIRATIIAIVSIPLSLLIAAIFLNWQAISLNI 407

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENR--KNQSVFCSLDMGFSRAYSTIFDSNITALI 472
            ++ G+ + +G  VD +I+V E I    R          ++         I  S +T ++
Sbjct: 408 MTLGGMAVAVGRVVDDSIVVIENIFRRVRKSDGGMTDEVIEQSTKEILKAITSSTLTTVV 467

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
             + + F GG   +    FA+T+  S+L S+  AI+IV  +  F       K +      
Sbjct: 468 VFLPIGFVGGITGKFFLPFALTIIFSLLASLLVAITIVPILAKFA-----FKKVPAEEKE 522

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
                     I+   +    + +     +     +        I  +    L      P 
Sbjct: 523 GVLQRWYGTLIEKSLSHKAIILVVSFLLLGGSLAIVPQLGFTFIPNEASKTLTASLELPA 582

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
             S+ +++  SL +  +  Q                   +                    
Sbjct: 583 ATSLEKTSDVSLNMEKMFDQENAIADVTTSVGARDFTTGLRLDNKASYFLNLKDGADVEK 642

Query: 650 TIQNTEIVGPKISRELIRKGIVGVI 674
           TI++ E     I++E      + V 
Sbjct: 643 TIKSLETKMDDIAKEDGVDVKISVA 667



 Score = 90.9 bits (223), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 103/287 (35%), Gaps = 6/287 (2%)

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
           + +   +  S+     S                G          PV LS + +     + 
Sbjct: 235 KLKNLQLTSSVASGAASGGQGQPAQSGPPAGATGETGAPTEQAEPVRLSDIATIEAVSKQ 294

Query: 604 GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
            + +  +     +  +  +           V +++ K   +I     I + + +   ++ 
Sbjct: 295 SEKTRYDLKDSLSMAITKKQDANTVEIADGVTKILNKYDDQIDYTIGIDSAKDIEESVAT 354

Query: 664 ELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAV 723
            +      G++ +  A L  +         + AI ++ L +     F     I  N+  +
Sbjct: 355 LVKE----GLLGALFASLAVLLFLRNIRATIIAIVSIPLSLLIAAIFLNWQAISLNIMTL 410

Query: 724 AAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             +   +G  V+D +VV + + + ++     ++  ++I++S  E L     +++   +  
Sbjct: 411 GGMAVAVGRVVDDSIVVIENIFRRVRKSDGGMT-DEVIEQSTKEILKAITSSTLTTVVVF 469

Query: 784 LPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           LP+   GG     F +P A  I+ +  +S+ +A  I+  +  +  K 
Sbjct: 470 LPIGFVGGITGKFF-LPFALTIIFSLLASLLVAITIVPILAKFAFKK 515



 Score = 75.5 bits (183), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/222 (15%), Positives = 87/222 (39%), Gaps = 7/222 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               +               V   VK  + +I     +  T   G   + E+ +   + ++
Sbjct: 814  DGKVYARVSGQVKGDNVQTVSSDVKAAVEKIDLPDGVSLTSGGGNDDTVEIFQSLGIAIV 873

Query: 675  ISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++   + + + I F K       +++LI     +L    L     +++ +   L LIG  
Sbjct: 874  VAIGLVYLTMLITFGKARIPFIILSSLIFVPIGSLVTLFLANEPLSVSVMIGFLMLIGIV 933

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WG 790
              + +V+ DR+ +N+   T  +  R+ + ++    L   + T+ A  ++++P+A+    G
Sbjct: 934  TTNAIVLVDRIGQNI---TRGLPVRESLIEAGKTRLRPILMTAFATIMALVPLALTTSSG 990

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
              +    A+ +  G+  +   ++ I   +    +  + K  R
Sbjct: 991  TLISKGLALTVIGGLTTSTLLTLIIVPVVYELFFFKKVKKER 1032


>gi|317479573|ref|ZP_07938700.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
 gi|316904235|gb|EFV26062.1| AcrB/AcrD/AcrF family protein [Bacteroides sp. 4_1_36]
          Length = 1040

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 75/620 (12%), Positives = 179/620 (28%), Gaps = 35/620 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWDTDIYLARQIVSEKLAVV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L  +  K  L   +     +++     D      ++           ++  +    Q
Sbjct: 118 SESLPANVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +   + DP R+R    T +++        N          +  +      L
Sbjct: 176 VAVLGGDIKEYQVQLDPERMRHYGVTLSEVMN-ITREMNLNANGGVLYEYGNEYIVRGVL 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             DKV+               +  K VV  +          ++    +G  L  +     
Sbjct: 235 STDKVD---------------QIAKAVVRSNGVSGAPILLEDIADVQVGAKLPKLGTASE 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                I   +    A  +   T +    L  + +     +K++    R       S    
Sbjct: 280 RGKHAILLTVTKQPATSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +       V+IVLF+ +   +  +++  ++ L++I ++  L  +G T+   S+ G+ +
Sbjct: 340 QKSLLEGGIFVVIVLFLFLANIRTTVISLVTLPLSLIASILALHYMGFTINTMSLGGMAI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +   +N+         +   +          I +S +  +++ 
Sbjct: 400 AIGSLVDDAIVDVENVYKRLHENRLKPAGEQLPILEVVFNASKEVRMPILNSTLIIIVSF 459

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI------DI 525
           V LFF     G  +    I   +++  S   A+++   +  +++  +K K          
Sbjct: 460 VPLFFLSGMEGRMLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKTKKQNNENSDSA 519

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +       +    G   LF +   C             +G   + + +
Sbjct: 520 VARKMKQWYGSALTFVLGHKKGVLGGTIGLFVVALGCFFTLGRSFLPPFNEGSFTINISS 579

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              + L          +   +S            R +            +E   +     
Sbjct: 580 LPGISLEESDKMGHRAEELLLSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRS 639

Query: 646 VPLSTIQNTEIVGPKISREL 665
                 +  E +G  +   +
Sbjct: 640 RSELVAEVREKLGTIVGANV 659



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 75/219 (34%), Gaps = 11/219 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +  + ++ K    ++   + I             + +  + G I   I +
Sbjct: 295 TSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNVQKSLLEGGIFVVIVL 354

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++         + ++ TL L +  ++      G   N  ++  +   IG  V+D +V 
Sbjct: 355 FLFLA---NIRTTVISLVTLPLSLIASILALHYMGFTINTMSLGGMAIAIGSLVDDAIVD 411

Query: 740 ---VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
              VY R+ +N +K     +   +++  +  E     + +++   +S +P+    G    
Sbjct: 412 VENVYKRLHENRLKPAGEQLPILEVVFNASKEVRMPILNSTLIIIVSFVPLFFLSGMEGR 471

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++    I     +  +   ++ +   +  ++        
Sbjct: 472 MLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKTKK 510



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 82/223 (36%), Gaps = 11/223 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N   ++      +    R +    +   +             G +   E      + +  
Sbjct: 816  NVKRKIVISANVADRDLRSVVNDIQAQVDAQIKLPEGYHIEYGGQFESEQAASRTLALTS 875

Query: 676  SAIAMLIYIWIRFKWYFAL--GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
                ++I++ +  ++  ++   AI  + L +    G FAL     E ++ A+   ++L G
Sbjct: 876  FMSIVVIFLLLYHEFR-SVKESAIILINLPLALIGGVFALLITTGEVSIPAIIGFISLFG 934

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + +++      N           D + +   + L   + T++++ ++++P+A+ G 
Sbjct: 935  IATRNGMLLISHY--NHLQQEEGYGVYDSVIRGSLDRLNPILMTALSSALALIPLALSGD 992

Query: 792  ----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                 +    A  +  G++ +   + FI   + L ++  +   
Sbjct: 993  LPGNEIQSPMAKVILGGLLTSTFLNGFIIPIVYLMMHHNQQPK 1035


>gi|196228353|ref|ZP_03127220.1| acriflavin resistance protein [Chthoniobacter flavus Ellin428]
 gi|196227756|gb|EDY22259.1| acriflavin resistance protein [Chthoniobacter flavus Ellin428]
          Length = 1062

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/550 (8%), Positives = 142/550 (25%), Gaps = 37/550 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +   +++++  MIC IG+   +     +  +D FP+      +                 
Sbjct: 7   KYPYFIIVICLMICVIGVTSLV-----RMPVDLFPAIRIPVVV---------VATFFSGM 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + +   +    +   +                + I + F      ++    ++     
Sbjct: 53  PPEQIENDITGRFERFFTLGSGIDHIESRSLPGVSLIKVYFQPGTNADSAVTTISNLAMA 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L       +++      + + L     + +     +          +Q+       
Sbjct: 113 QLRRLPPGTLPPVVLKFDASSLPVCLITLKGEGLNE--TQLRDIGQFTVRNQVASVPGAS 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                     Q+    DP +L     +   +       N         +  +        
Sbjct: 171 VPQPFGGKYRQIMVYVDPLKLEAHQLSVMDVVRSVNESNLILPAGDVKIGPIDYGLYTNS 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I                     ++    +  +        +      +  +  
Sbjct: 231 QLRGIEDI--------------------NNLPLKTVDGKPVLVGDVGHAKDGAQIQTNVV 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +   +   +I      A           +  V          +   
Sbjct: 271 RIDGQKSAYLSILKQGGDANTISIVNGVKKAVSELLDVPKSLVANVVFDQSVFVKTAIEN 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                AI   L  +++ + +   +  +    SI L+ + T   LS    ++    + G+ 
Sbjct: 331 LLHEGAIGLVLTGLMILIFLGNFRATVAVFLSIPLSALATFIALSFGDNSINAMILGGLA 390

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL-FFF 480
           L     +D++++V E I       ++   + + G S     +  + +T  I    + F +
Sbjct: 391 LAFSRLIDNSVVVLENIFRHIELGETPEVAAEKGGSEVALPVLAATLTTAIVFFPVTFLY 450

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
           G       A+ + + + +    A+++    +      K  +    +              
Sbjct: 451 GVSRFLFSALALSVVLSLFASYAVAMSVVPLFCAKLIKAHQEHGSHDGPPPAGAWARFNF 510

Query: 541 QFMRARFWGV 550
            F +     +
Sbjct: 511 WFNKNFHAFL 520



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 58/147 (39%), Gaps = 6/147 (4%)

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
             +      +  +   I   +      G   N+ ++  ++ + G  V++ +++ +      
Sbjct: 900  SFIDPFLILLAVPPGIAGVIVMLTATGTTLNVMSLMGIVMMAGIVVSNSILIVEFTH--- 956

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +L    ++ R+ +  +    L   + TS+A  I ++PMA+    G       A  +  G+
Sbjct: 957  RLIEDGMALREAVQFACRVRLRPILMTSLATIIGLIPMAMKLGTGSEAYAPLARAIIGGL 1016

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNAR 832
             V+   ++FI       +Y  R  + R
Sbjct: 1017 TVSVVLTVFIVPAAFYIVYRKRFADKR 1043



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 83/268 (30%), Gaps = 5/268 (1%)

Query: 557 SICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                  L+T+    GI+    + L  +  +PV +  V    +  QI     +    +  
Sbjct: 219 IGPIDYGLYTNSQLRGIEDINNLPLKTVDGKPVLVGDVGHAKDGAQIQTNVVRIDGQKSA 278

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
           +L  L+     +                 VP S + N         +  I   +    I 
Sbjct: 279 YLSILKQGGDANTISIVNGVKKAVSELLDVPKSLVANVVFDQSVFVKTAIENLLHEGAIG 338

Query: 677 AIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            +   + I I    +   +    ++ L    T    +      N   +  +       ++
Sbjct: 339 LVLTGLMILIFLGNFRATVAVFLSIPLSALATFIALSFGDNSINAMILGGLALAFSRLID 398

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG 795
           + VVV + +    +      +     +K  +E     +  ++   I   P+    G    
Sbjct: 399 NSVVVLENI---FRHIELGETPEVAAEKGGSEVALPVLAATLTTAIVFFPVTFLYGVSRF 455

Query: 796 SFAIPMAFGIVVAASSSIFIAAPILLFI 823
            F+  +A  +V++  +S  +A  ++   
Sbjct: 456 LFS-ALALSVVLSLFASYAVAMSVVPLF 482



 Score = 50.8 bits (119), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 74/535 (13%), Positives = 168/535 (31%), Gaps = 37/535 (6%)

Query: 11   YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF--VNG 68
             +++  +GL +     +P   L  FP   P   +   ++L+  +   +EV E +   V  
Sbjct: 536  STVLAILGLFVLSFALVPALGLAYFPRTDPGQFV---INLKAPTGTRIEVTEQEVAKVEA 592

Query: 69   FLQMYSDE--LRSFLKKEG-------IGVFSMRQIQNKITLSFADSRFK--ENIADKVTL 117
             ++   +   LR  +   G       I   +       + +S  D          D++  
Sbjct: 593  LVRKIVEPKDLRLIVSNLGSTADFSAIYTSNSASHTAFVQVSLQDEHKIGSYEYMDRMRK 652

Query: 118  FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             +     +L+   +   LV                 QV S  ++++     +   ++   
Sbjct: 653  AIHDEVPELSAYFQSGGLVDAVLNLGQPAPIDI---QVSSSNLQKAYATATEIAAKVKAI 709

Query: 178  ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
            +     L    I +     +        LG + K     V+   +  G +    ++ +  
Sbjct: 710  KGVSDVLIPQDIDMPSMRLEIDRLHASQLGLSEKEVVGNVITALASNGMIAPSFWVDEKT 769

Query: 238  GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
            GN YL+                    KT   +  I            +       P+   
Sbjct: 770  GNDYLL-----------TVQYPEDTVKTMSDLKGIPLRASNQTDPARLDAVTKLVPMLSP 818

Query: 298  LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
             +        +     +   +  G        I+    +   + I ++     +V A   
Sbjct: 819  TEVDHFQLRRVIDVFVAPHGEELGRIASAVNKIVKDTNKPEGVRIAIHG----SVQAMNS 874

Query: 358  SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
            S + +     +   LV +VL           +   ++   +   + +L+  G TL + S+
Sbjct: 875  SFTSFGLGLILSLVLVYLVLVAQFKSFIDPFLILLAVPPGIAGVIVMLTATGTTLNVMSL 934

Query: 418  AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             GIV+  G+ V ++IL+ E          ++  ++          I  +++  +I  + +
Sbjct: 935  MGIVMMAGIVVSNSILIVEFTHRLIEDGMALREAVQFACRVRLRPILMTSLATIIGLIPM 994

Query: 478  ---FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
                  G  A    A  +   + +S+   + IV A    + R +       +P+ 
Sbjct: 995  AMKLGTGSEAYAPLARAIIGGLTVSVVLTVFIVPAAFYIVYRKRFADKRPASPMR 1049


>gi|193222320|emb|CAL61719.2| Cation efflux system protein CusA [Herminiimonas arsenicoxydans]
          Length = 1050

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 68/563 (12%), Positives = 153/563 (27%), Gaps = 47/563 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  W+++   +I   GL       L ++ LD  P       I                  
Sbjct: 12  NRFWVLLAALVIAGWGLWS-----LNKTPLDALPDLSDTQVI---------IRAQYPGKA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D+  +     +V  ++  V
Sbjct: 58  PQIVEDQVTYPLTTALLAVPGAKTVRGYSFFGDSFVYVLFDDATDQYWARSRVLEYISQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +  L    T                 +   +           ++       +
Sbjct: 118 QSRLPQGVRAELGPDGTGVGWVFEY-ALVDRTGHNDLSQLRTLNDWFLKFELKTVPDVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +LR    + AK+       N    G +  +        +   
Sbjct: 177 VASIGGMVKQYQVILDPDKLRAFGISHAKVLDALAKANQESGGSVVEMAETEYMVRSHGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                     V +S ++ G              P        +
Sbjct: 237 LRSLEDFRN------------------VLLSANDAGTPVLLRDVATIRIGPEMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI+      A L++        +           + +  
Sbjct: 279 NGEGEVAGGVVVMRSGKNALETIKAVKAKLATLQSSLPKGVEIVTTYDRSKLITAAVTNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        +V +V  + + + +  LVA  S+ L V+    ++   G    L S+ GI +
Sbjct: 339 RDKLIEEFVVVALVCAIFLFHLRSALVAIISLPLGVLAAFIVMRYQGVNANLMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI-------------- 468
            +G  VD+ I++ E   +          + ++     +  I +S I              
Sbjct: 399 AVGAMVDAAIVMIENAHKHLEAYSHAHPNQEISAKERWDLIAESAIEVGPALFFSLLIVT 458

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            + I    L    G      A T   ++  +   AI+++  +M ++IR +          
Sbjct: 459 LSFIPVFALEAQEGKLFAPLAYTKTYTLAAAAGLAITLIPVLMGYMIRGRIPSEASNPIN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVG 551
                +        +    W + 
Sbjct: 519 RVLIRVYRPWLNASLAHPKWTIA 541



 Score = 71.3 bits (172), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 87/281 (30%), Gaps = 12/281 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               I + +       +       +       V L  + +   S     I  +N       
Sbjct: 765  RFPINVRYPQEYRNSVHTLREFPIVTEKGAQVRLGDITNIKVSDGPPMIRSENARLSGWV 824

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             V ++     +  +     + K+                   +   +L  + ++ + ++ 
Sbjct: 825  YVDVRGTDLHTAVKAMQAAVAKEVQLPPGYSIGWSGQFEYLERALAKL--QTVIPLTLAV 882

Query: 678  IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            I +L+Y+  R     AL  + T+   +     F  L G   ++      + L G +    
Sbjct: 883  ILILLYLAFR-SVSEALLLMLTVPFALIGGFWFVWLLGHAVSVATAVGFIALAGLAAEFG 941

Query: 738  VVVYDRMRKNMKLYT------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
            VV+   +R ++          T     + I +     +     T       ++P+     
Sbjct: 942  VVMLVYLRNSLNQRLQSGLPLTKELIAEAIREGAVLRVRPKAMTVAVILAGLIPIMFGSG 1001

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G  V+   A PM  G++ A   S+F+       + + + +
Sbjct: 1002 AGSEVMQRIAAPMVGGMITAPLLSLFVIPAAWRLLQERKLR 1042



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/134 (17%), Positives = 54/134 (40%), Gaps = 12/134 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+++ +  +      F    AL AI +L L +          G+  NL ++  +   +G 
Sbjct: 347 VVVALVCAI----FLFHLRSALVAIISLPLGVLAAFIVMRYQGVNANLMSLGGIAIAVGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDL--------IDKSINETLGRSVYTSMAAFISVL 784
            V+  +V+ +   K+++ Y+ +   +++        I +S  E      ++ +   +S +
Sbjct: 403 MVDAAIVMIENAHKHLEAYSHAHPNQEISAKERWDLIAESAIEVGPALFFSLLIVTLSFI 462

Query: 785 PMAVWGGSVIGSFA 798
           P+          FA
Sbjct: 463 PVFALEAQEGKLFA 476


>gi|330503424|ref|YP_004380293.1| CzcA family heavy metal efflux protein [Pseudomonas mendocina
           NK-01]
 gi|328917710|gb|AEB58541.1| CzcA family heavy metal efflux protein [Pseudomonas mendocina
           NK-01]
          Length = 1049

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 66/598 (11%), Positives = 155/598 (25%), Gaps = 48/598 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L    I  +GL       L  + LD  P       I                  
Sbjct: 12  NRFLVLLATLFITALGLWS-----LRNTPLDALPDLSDTQVI---------IRTSFPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L   
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGYSFFGDSFVYVLFEDDTDLYWARSRVLEYLNQA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       L    T                     +           ++    +  +
Sbjct: 118 QERLPEGVTTTLGPDATGVGWIYQY-ALVDRSGQHDLAQLRALQDWFLKYELKSLPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L     T  ++       N    G +  +            
Sbjct: 177 VATLGGMVKQYQVLLDPQKLVAYGVTQQEVEAALKSANQETGGAILELAEREYMVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +E   +                     V +     G              P        +
Sbjct: 237 LESLDDFRN------------------VPLRASASGIPVLLGQVATIQLGPEMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI         L+A        +           +    
Sbjct: 279 DGQGEVVGGVVILRSGKNARDTIAAVKTKLDSLKASLPAGVEVVTTYDRSQLIDRAIDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + + + +  LVA  ++ L +++   ++   G    + S+ GI +
Sbjct: 339 SYKLLEEFVVVALVCLIFLWHLRSSLVAIITLPLGILMAFIVMRYQGVNANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            IG  VD+ +++ E   +              + ++ +  +    +     +F S +   
Sbjct: 399 AIGAMVDAAVVMIENAHKHIEAWKARHPNEPLQGEAHWRVIGEAAAEVGPALFFSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   ++  +   ++++V  +M + IR            
Sbjct: 459 LSFLPVFTLEAQEGRLFGPLAFTKTYAMAAAAGLSVTLVPVLMGYWIRGHIPSEQQNPLN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                    +    +      + +++L  + S+  L   G  +      G  L + + 
Sbjct: 519 RWLIGAYRPVLEWVLAWPKVTLALAVLVFVSSLWPLSRLGGEFLPPMDEGDLLYMPSA 576



 Score = 59.3 bits (141), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 91/287 (31%), Gaps = 15/287 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +             + +   A + + L  V     +     +  +N     
Sbjct: 763  LARFPINLRYPKEWRDSPQALRRMPILTPAGQQITLGTVAQVSLTEGPPMLRSENGRLSG 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V ++ +   S        + ++   +     +         + +  L       V  
Sbjct: 823  WVYVDVRGRDLASTVHELQQRVAERVKLDAGMTVSYSGQFEYLERANARLS----WVVPA 878

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + + +++ F ++  AL  + TL   ++  +     FG   ++      + L G S 
Sbjct: 879  TLLIIFVLLYLTFSRFSEALLIMATLPFALSGGIWLLYWFGFNLSVATGVGFIALAGVSA 938

Query: 735  NDKVVVYDRMRKNMKLYTTSI-----SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
               V++   ++        S      +  + I +     +   V T       +LP+   
Sbjct: 939  EFGVIMLLYLKNAWNARLDSGRSGDPALLEAIREGAVLRVRPKVMTVAVIIAGLLPILWG 998

Query: 790  GG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            GG    V+   A PM  G++ A   S+ +      +    R +  ++
Sbjct: 999  GGAGSEVMKRIAAPMVGGMITAPLMSMLVLPA--AYWLMRRQRTQKV 1043



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/209 (17%), Positives = 77/209 (36%), Gaps = 14/209 (6%)

Query: 626 GDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW 685
               A    L+ +K  +   V + T  +   +  +    L  K +   ++ A+  LI++W
Sbjct: 299 DTIAAVKTKLDSLKASLPAGVEVVTTYDRSQLIDRAIDNLSYKLLEEFVVVALVCLIFLW 358

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                  +L AI TL L I          G+  N+ ++  +   IG  V+  VV+ +   
Sbjct: 359 ---HLRSSLVAIITLPLGILMAFIVMRYQGVNANIMSLGGIAIAIGAMVDAAVVMIENAH 415

Query: 746 KNMKLYTTSISFR--------DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF 797
           K+++ +                +I ++  E      ++ +   +S LP+          F
Sbjct: 416 KHIEAWKARHPNEPLQGEAHWRVIGEAAAEVGPALFFSLLIITLSFLPVFTLEAQEGRLF 475

Query: 798 ---AIPMAFGIVVAASSSIFIAAPILLFI 823
              A    + +  AA  S+ +   ++ + 
Sbjct: 476 GPLAFTKTYAMAAAAGLSVTLVPVLMGYW 504


>gi|94497126|ref|ZP_01303699.1| heavy metal RND efflux transporter, CzcA family protein
           [Sphingomonas sp. SKA58]
 gi|94423498|gb|EAT08526.1| heavy metal RND efflux transporter, CzcA family protein
           [Sphingomonas sp. SKA58]
          Length = 1055

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 63/569 (11%), Positives = 142/569 (24%), Gaps = 42/569 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L+ ++  + + +A    +  + +D  P            D++              V   
Sbjct: 14  LFIVLAAVAVTLAGFWAVRTTPVDALPDLS---------DVQVVVRSNYPGQAPRIVEEQ 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +          +              + + + F D         +V  +L  V ++L   
Sbjct: 65  VTYPLATTMLSVPGAKTVRGYSMFGDSYVYIIFEDGTDLYWARSRVLEYLNQVQNRLPDG 124

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
               L    T                                 ++       +      +
Sbjct: 125 VTSTLGPDATGVGWIYEY-ALVDRTGGHDLAGLRSLQDWFLRYELKTIPGIAEVASVGGM 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     +P R+  L  T A++       N    G +  +            + D  + 
Sbjct: 184 VKQYQVVLEPYRMASLGVTHAEIVSAIQAANQEAGGSIVEMGEAEYMVRASGYLGDLDDF 243

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
                               + +     G              P        +     + 
Sbjct: 244 RA------------------IPLRAVSGGVPVTLGDVATIQVGPELRRGIAELNGEGEVA 285

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             I   +        I+   +    L+A        +           S           
Sbjct: 286 GGIIVLRQGADARSAIQAVELKLDELQASLPEGVEIVTTYDRSQLIDASIENLTTKLIEE 345

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
             +V +V  + + + +  LVA  ++ L V+    ++   G    + S+ GI + IG  VD
Sbjct: 346 FIVVALVCALFLWHARSALVAIITLPLGVLAAFIVMRFQGVNANIMSLGGIAIAIGAMVD 405

Query: 430 SNILVNERIR----EENRKNQSVFCSLDMGFSRAYSTIFDSN----------ITALIATV 475
           + +++ E           +N     ++   +        D              + +   
Sbjct: 406 AAVVMIENAHKHLERWEHENPDTVLAVKERWRIIADASKDVGPALFFSLLIITLSFLPVF 465

Query: 476 VLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
            L    G      A T   ++  +   ++++V  MM ++IR K               I 
Sbjct: 466 TLQAQEGRLFAPLAFTKTYAMAAAAILSVTLVPVMMGWLIRGKIPSEDSNFLNRWLTKIY 525

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLL 564
                  MR     + I+ L  + +    
Sbjct: 526 RPGLDWVMRRPKATLAIAALIFLTTAIPF 554



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/163 (19%), Positives = 63/163 (38%), Gaps = 7/163 (4%)

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            ++ I +L+Y+  R +W  AL  + TL   +T       L G   ++      + L G S 
Sbjct: 880  LAIIFLLLYLIFR-RWDEALLIMGTLPFALTGGYWLLYLMGYNQSVATAVGFIALAGVSA 938

Query: 735  NDKVVVYDRMR---KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
               VV+   ++   +  +   ++    + I +     +     T       + P+ +   
Sbjct: 939  EFGVVMLIYLKAALERRQADLSAEEVDEAIREGALLRVRPKAMTVAVILAGLFPILIGTG 998

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             G  V+   A PM  G++ A   S+F+     L +   R + +
Sbjct: 999  AGSEVMSRIAAPMVGGMITAPLLSMFLLPAAYLLLRRPRPEKS 1041



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 87/244 (35%), Gaps = 14/244 (5%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +       I+  N +GE    + +  Q  D+ +  + +E+   ++   +P      T  
Sbjct: 266 QVGPELRRGIAELNGEGEVAGGIIVLRQGADARSAIQAVELKLDELQASLPEGVEIVTTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRFKW--YFALGAITTLILDITKTLGFFALF 714
              ++    I      +I   I + +   + F W    AL AI TL L +          
Sbjct: 326 DRSQLIDASIENLTTKLIEEFIVVALVCAL-FLWHARSALVAIITLPLGVLAAFIVMRFQ 384

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR--------DLIDKSIN 766
           G+  N+ ++  +   IG  V+  VV+ +   K+++ +                +I  +  
Sbjct: 385 GVNANIMSLGGIAIAIGAMVDAAVVMIENAHKHLERWEHENPDTVLAVKERWRIIADASK 444

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFI 823
           +      ++ +   +S LP+          F   A    + +  AA  S+ +   ++ ++
Sbjct: 445 DVGPALFFSLLIITLSFLPVFTLQAQEGRLFAPLAFTKTYAMAAAAILSVTLVPVMMGWL 504

Query: 824 YDWR 827
              +
Sbjct: 505 IRGK 508


>gi|222111387|ref|YP_002553651.1| CzcA family heavy metal efflux pump [Acidovorax ebreus TPSY]
 gi|221730831|gb|ACM33651.1| heavy metal efflux pump, CzcA family [Acidovorax ebreus TPSY]
          Length = 1052

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 58/561 (10%), Positives = 146/561 (26%), Gaps = 66/561 (11%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            WLV+L  +      + +      +  +D  P                 +++ ++++   
Sbjct: 13  RWLVLLAVLGMAALGVFS----YQRLPIDAVPDI---------------TNVQVQINTPA 53

Query: 65  F------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                      +    +   + L +        R   +++T+ F D          V   
Sbjct: 54  PGYSPLESEQRVTFPIETAMAGLPRLEQTRSLSRYGLSQVTVVFKDGTDIYFARQLVNER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLS------QNNIDQVISHAIEQSMEIIRQRID 172
           +Q    KL       L    T      + +          D       +           
Sbjct: 114 IQEAKEKLPAGLSPALGPVATGLGEIYMWTVETKEGALKPDGTPYTPTDLREIQDWIIKP 173

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           Q+       +         +      P +L     + A +       N +          
Sbjct: 174 QLRNVPGVTEINTIGGYAKEYQVAPFPDKLVAYDLSMADLVQALERNNANVGAGYIE--- 230

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
                G QYL+    +++GI              + + +I   +             +G 
Sbjct: 231 ---RRGEQYLIRAPGQVAGI--------------EDIANIVVSQAQGAPIRVRDIAEVGI 273

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
              +           +           +     +        +     P  +        
Sbjct: 274 GKELRTGAATENGREVVLGTVFMLMGENSRTVSQAVDKRLQEVNKTLPPGVIAQTVYDRT 333

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                + +  K      A LV+ +LF+ +   +  ++    I L ++ T   +     + 
Sbjct: 334 ILIDKAIATVKKNLTEGALLVVAILFLFLGNIRAAVITAAVIPLAMLFTFTGMVSNKVSA 393

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYST 462
            L S+  +  GI   +D  +++ E                   Q  F  +      A   
Sbjct: 394 NLMSLGALDFGII--IDGAVVIVENCVRRLAHAQAAAGRPLTRQERFHEVFAAAREARRP 451

Query: 463 IFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           +    +  ++  + +F      G      A T+  +++ +M  +++ + A +  +I    
Sbjct: 452 LVYGQLIIMVVYLPIFALSGVEGKMFHPMAFTVVAALVGAMILSVTFIPAAVALLIGKHV 511

Query: 520 MKSIDINPLSRFFLIPDCIAI 540
            +  +   L+        +  
Sbjct: 512 GEKENRLMLAAKKGYAPMLDW 532



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 91/254 (35%), Gaps = 7/254 (2%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             + + +       V    + S +I     Q         V +          + V E  +
Sbjct: 790  PIRLPSAGGSPAYVRLGEVASFEIAPGPNQISRENGKRRVVVTANVRGRDIGSFVAEAHE 849

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAIT 698
            +   ++   S          +  +   ++  + V I+ + + + ++  F      L   T
Sbjct: 850  QLQQKVEIPSGYWTAWGGTFEQLQSASQRLQIVVPIALLLVFMLLFAMFNNVKDGLLVFT 909

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR 758
             +   +T  +    L  I  +++A    + L G +V + +V+   +R    L    +   
Sbjct: 910  GVPFALTGGIVALWLRDIPLSISAGVGFIALSGVAVLNGLVMISFIR---SLREEGLGLD 966

Query: 759  DLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFI 815
            + + +     L   + T++ A +  +PMA+    G  V    A  +  GI+ + + ++ +
Sbjct: 967  EAVREGALTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGIISSTALTLLV 1026

Query: 816  AAPILLFIYDWRAK 829
               +  + + WR +
Sbjct: 1027 LPVLYRWAHAWRGR 1040



 Score = 38.5 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 73/255 (28%), Gaps = 19/255 (7%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            ++  + IG         E    V L          +R +     K  + V  +      
Sbjct: 266 RDIAEVGIGKELRTGAATENGREVVLGTVFMLMGENSRTVSQAVDKRLQEVNKTLPPGVI 325

Query: 656 IVGPKISRELIRKGIVGV-----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
                    LI K I  V       + + + I          A+     + L +  T   
Sbjct: 326 AQTVYDRTILIDKAIATVKKNLTEGALLVVAILFLFLGNIRAAVITAAVIPLAMLFTFTG 385

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTTSISFRDL-----IDK 763
                +  NL ++ A+    G  ++  VV+ +    R                    +  
Sbjct: 386 MVSNKVSANLMSLGAL--DFGIIIDGAVVIVENCVRRLAHAQAAAGRPLTRQERFHEVFA 443

Query: 764 SINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPI 819
           +  E     VY  +   +  LP+    G    +    A  +   +V A   S+ FI A +
Sbjct: 444 AAREARRPLVYGQLIIMVVYLPIFALSGVEGKMFHPMAFTVVAALVGAMILSVTFIPAAV 503

Query: 820 LLFIYDW-RAKNARI 833
            L I      K  R+
Sbjct: 504 ALLIGKHVGEKENRL 518


>gi|71280826|ref|YP_271497.1| cation efflux system protein CusA [Colwellia psychrerythraea 34H]
 gi|71146566|gb|AAZ27039.1| cation efflux system protein CusA [Colwellia psychrerythraea 34H]
          Length = 1052

 Score =  121 bits (303), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 75/594 (12%), Positives = 163/594 (27%), Gaps = 43/594 (7%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N + VIL +MI     L A+ N    + +D  P       I                   
Sbjct: 12  NRFFVILATMILVGAGLYAVKN----TPIDALPDLSDVQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F +         +V  +L  V+
Sbjct: 59  QVVEDQVTYPLTTAMLSVPGAVTVRGFSFFGDSYVYIIFEEDTDLYWARSRVLEYLSQVS 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L  D K  L    T      + S            +           ++   +   + 
Sbjct: 119 PNLPSDAKPQLGPDATGVGWVYLYS-LIDKTGQHDLSQLRSLQDWFLKYELQTVKGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q   + DP +LR      + +       N      +  +            +
Sbjct: 178 TALGGMVKQYQVQVDPDKLRAFGIPLSLIQTAIKQGNQEIGASVVEMAEAEYMVRATGYL 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +   ++                    + +  +E G     +        P        + 
Sbjct: 238 KGVEDLEN------------------IPLGVNENGTPLLLKDVAQIGTGPQMRRGIAELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   I   +   +    I    +    L+ G       +           + S   
Sbjct: 280 GEGETVGGIVVMRFGENAQQVINGVKVKLEQLKKGLPEGVEIVPVYDRSALIERAVSNLA 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                  G+V +V  + + + +  LV   SI + ++    ++   G    + S+ GI + 
Sbjct: 340 MKLLEEFGVVALVCVIFLFHLRSSLVVIISIPVGILTAFIVMHAQGLNANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRK--------NQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           IG  VD  I++ E + +   +        N+  +  +    S     +F S +   ++ V
Sbjct: 400 IGAMVDGAIVMIENMHKHMEREPQDKPLSNEKRWQVVVDSASEVGPALFFSLLIITVSFV 459

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   ++  +   AI++V  +M + IR K +            
Sbjct: 460 PVFTLEAQEGRMFSPLAYTKTYAMAAAAALAITLVPVLMGYFIRGKVLAEHKNPVNKFLT 519

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +        +R     +  +++  I  +  L   G  +      G  + +   
Sbjct: 520 ALYLPALKAVLRFPKTTLSAAVVVFIIGLYPLDKIGSEFIPPLDEGDLMYMPTT 573



 Score = 45.8 bits (106), Expect = 0.028,   Method: Composition-based stats.
 Identities = 18/130 (13%), Positives = 49/130 (37%), Gaps = 9/130 (6%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           +++ + ++      F    +L  I ++ + I          G+  N+ ++  +   IG  
Sbjct: 348 VVALVCVI----FLFHLRSSLVVIISIPVGILTAFIVMHAQGLNANIMSLGGIAIAIGAM 403

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVLPMAV 788
           V+  +V+ + M K+M+               ++  S +E      ++ +   +S +P+  
Sbjct: 404 VDGAIVMIENMHKHMEREPQDKPLSNEKRWQVVVDSASEVGPALFFSLLIITVSFVPVFT 463

Query: 789 WGGSVIGSFA 798
                   F+
Sbjct: 464 LEAQEGRMFS 473


>gi|260556896|ref|ZP_05829113.1| RND divalent metal cation efflux transporter [Acinetobacter
           baumannii ATCC 19606]
 gi|260409502|gb|EEX02803.1| RND divalent metal cation efflux transporter [Acinetobacter
           baumannii ATCC 19606]
          Length = 1052

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/616 (10%), Positives = 162/616 (26%), Gaps = 60/616 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  W+++       +G+         +  +D  P                   +  + +
Sbjct: 24  QNAIWVMLFVLAWIGVGIWS-----YQKLPIDAVPDITNTQ-----------VQINTQAN 67

Query: 62  EDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +   + +          R   +++T+ F D          +   L
Sbjct: 68  GYTALEVEQRITYPIENAMAGIPNLEQTRSISRYGLSQVTIIFKDGTDIYWARQLINQRL 127

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRIDQ 173
           Q  + +L       +   +T                   D     A++           Q
Sbjct: 128 QEADGQLPESVDPIMSPVSTGLGEIYQWVVKAKSGAKKADGTAYTAMDLREIQDWIVRPQ 187

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   +               D  RL+QL  +  +        N ++          
Sbjct: 188 LQRVKGVAEINSIGGYNKTYIVSPDLKRLQQLQISINEFQTALQENNENRGAGFIEENGE 247

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           + +     ++    +I                     +I+           V   N+   
Sbjct: 248 QLTVRVPGMLSSVEDIQ--------------------NITVSTKNGLPIRVVDVANVSIG 287

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +               I       +     +        +++                
Sbjct: 288 HDLRTGAATYNGEETVLGIAMMMMGENSRTVAQAVDAKIKEIQSTLPKGVEIETVYDRTS 347

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +  +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  
Sbjct: 348 LVNKAIATVQKNLVEGAILVIVILFIFLGNFRAALITACVIPLSMLFTLTGMAEQNISAN 407

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTI 463
           L S+  +  GI   VD  +++ E       + Q            F  + +   +A   +
Sbjct: 408 LMSLGALDFGII--VDGAVVIVENCIRRLAEAQHALHRPLTRSERFKEVFLAAKQARRPL 465

Query: 464 FDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               +  L+  + +F   G         A+T+ +++L +M  +++ V A +   +  +  
Sbjct: 466 IFGQMIILVVYLPIFALSGVEAKMFHPMAMTVVMALLGAMILSVTFVPAAVALFVTGEVK 525

Query: 521 KSIDINPLSRFFLIPDCI-AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           +              D +     ++       +SIL     +           +      
Sbjct: 526 EKETRWMQLLKQKYRDVLDQAYQLKIVVVSFALSILVLTGVLATQMGSEFAPQLSEGDFA 585

Query: 580 QLGVLANRPVDLSVVR 595
              + +        +R
Sbjct: 586 LQQMRSPSTGLEQSLR 601



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 76/251 (30%), Gaps = 35/251 (13%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  ++      Q         V +          + V E+      E +P        
Sbjct: 815  QDVAKVERTSGLNQVGRENGKRRVIITANVEGRDLGSFVQELRTTLAKEQLPAGYWLEYG 874

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                 ++    R   + V ++   + I +               +  ++ ++L  F+   
Sbjct: 875  GQFENLASAAAR-MKIVVPLALAMIFILLM-------------AVFHNVKESLLVFSGVP 920

Query: 716  IEFNLTAVA--------------AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               +   +A                + L G +V + +V+   +++           +   
Sbjct: 921  FALSGGLIALWLRDIPLSMSAGVGFIALSGVAVLNGLVMLSFIKE----LREKFDIQIAT 976

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   L   + T+  A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 977  WNGAILRLRPVLMTACVASLGFIPMALATGTGAEVQRPLATVVIGGIISSTILTLVLLPV 1036

Query: 819  ILLFIYDWRAK 829
            I  ++ + + K
Sbjct: 1037 IYRWMNEDKTK 1047


>gi|227505744|ref|ZP_03935793.1| MmpL3 protein [Corynebacterium striatum ATCC 6940]
 gi|227197712|gb|EEI77760.1| MmpL3 protein [Corynebacterium striatum ATCC 6940]
          Length = 765

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/479 (13%), Positives = 144/479 (30%), Gaps = 45/479 (9%)

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV 448
           V      L  +  L++L+              +LG+GLA+D  + +  R REE  K + V
Sbjct: 202 VVGGLSILGSLGILSVLAGFQQVNVFAQAVVTLLGLGLAIDYGLFMVSRFREELDKGRDV 261

Query: 449 FCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVR 508
             ++    + A  T+  S     +A   LF F    ++  A     ++ ++   +++++ 
Sbjct: 262 REAVATTTATAGQTVVFSAGMVAVALSGLFLFPQAFLKSVAYGSISAVGLAALLSVTVLP 321

Query: 509 AMMIFIIRYKKM----KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
           ++   + +        K+                      A+   VGI  L    ++ +L
Sbjct: 322 SLFGLLGKNIDKFSVRKTSRRARRIEDTFWYKLPRWAMRHAKLMTVGICALLIALTLPVL 381

Query: 565 FT----------------------HGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQ 602
                                       +       ++L V       L  V   +  L 
Sbjct: 382 GVKFGGINETYLPPTHETRMAQDKFNEEFPSFRTEPVKLVVTNATNAQLVDVVMQVRQLD 441

Query: 603 IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                       K+    L     D     R++  +++          +  T  +  +  
Sbjct: 442 GLTKPMGPTTPTKDGTTVLAAGIEDRDDYARIVHELEQIEAPEGVELYVGGTPAMEVESL 501

Query: 663 RELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIE---- 717
             L  K     +   +A  + + + F  +   L AI   +L +  TLG   L  ++    
Sbjct: 502 DALFHKLPWMALYVVVATFLLMSLVFGSFILPLKAILMTLLSLGATLGILTLMFVDGFGS 561

Query: 718 ----------FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
                      +   V  +  + G S + +V +  RM +  +      S    I      
Sbjct: 562 GALNFTAGPLMSPILVLIIAIVFGLSTDYEVFLVSRMVEARRA---GQSTDHAIASGTAH 618

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYD 825
           T G     ++   +           ++   A  M F +        + +   ++  + +
Sbjct: 619 TGGIITAAALIMIVVAGAFGFSDIVMMKYIAFGMIFALAFDATIVRMLLVPAVMHLLRE 677


>gi|225873877|ref|YP_002755336.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family,
           permease protein [Acidobacterium capsulatum ATCC 51196]
 gi|225793315|gb|ACO33405.1| RND transporter, hydrophobe/amphiphile efflux-1 (HAE1) family,
           permease protein [Acidobacterium capsulatum ATCC 51196]
          Length = 1102

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/573 (12%), Positives = 157/573 (27%), Gaps = 48/573 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R      +   ++  +G +  L     +  +D FP+                  ++ E 
Sbjct: 8   LRRPYTFAVFALLLLILGPIAIL-----RMPVDIFPNINIPV-----------VSIIWE- 50

Query: 61  DEDDFVNGFLQM-----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
               F    +           L + +        +       + + F  +        ++
Sbjct: 51  -YPGFSPEQMANRIVSVTERALTTTVNDINHIESTSLDGIAVVKVYFQPNVQIAQAVAQI 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
           T   Q     L       L++      + ++    +   +     +     +     Q+ 
Sbjct: 110 TAISQTQIKHLPSGTTPPLIIQYNASSVPVIQVGLSGKGMSEQ--KLGDLAMNFVRTQLV 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                         L Q+  + +   L+    T A +       N         +  L  
Sbjct: 168 TVPGAGVPYPYGGKLRQVQVDLNLPALQSKGLTPADVVNTIAAQNLILPSGTIKIGPLEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
                        +                     ++    +     +     ++     
Sbjct: 228 QIDTNSAPATIAAL--------------------NNLPIRSVNGAMVYIHDVAHVRDGSP 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +   +     +          S    I       A L++   P              
Sbjct: 268 PQTNIVRVDGQRSSLLSVIKTGDASTLDIINGVKKKLAQLKSQLPPNLKITPLADQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             S         I A L  +++ + +   +  L+   SI L ++ +L  LS LG ++ + 
Sbjct: 328 KASIDGVVREGVIAACLTALMILLFLGSLRSTLIIAVSIPLAILASLLALSALGQSINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I     + + +  ++  G S+       S I+  I  V
Sbjct: 388 TLGGLALAVGILVDDATVEVENINRNLEQGKPIEQAILDGASQIAVPALVSTISICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +FF  G         A  +  ++  S   + ++V  M  +++R    +       SR  
Sbjct: 448 PMFFLTGVARYLFVPLAEAVVFAMAASYLLSRTVVPTMARYLLREHDDEEAARRQRSRNP 507

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLF 565
                +       R  GV  +IL        +F
Sbjct: 508 FTRFYLWFDDRFERLRGVYYAILSLCIRNAAVF 540



 Score = 63.6 bits (152), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/157 (15%), Positives = 60/157 (38%), Gaps = 6/157 (3%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ S + + + I I F  W      ++ L   +   +    L     ++ A+   +  +G
Sbjct: 922  LLFSILLVYLLIVINFQSWLDPFIIVSALPAALCGIVWMLFLTHTHVSVPALTGSIMCMG 981

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    R+ ++      S    ++          + T++A  I +LPMA+   
Sbjct: 982  VATANSILVVSFAREQLEQTV-GDSALSALNAGFTR-FRPVIMTALAMIIGMLPMALGMG 1039

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             GG         +  G++ A  S++F        ++ 
Sbjct: 1040 EGGEQNAPLGRAVIGGLIFATVSTLFFVPTFFSAVHG 1076



 Score = 53.5 bits (126), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/198 (14%), Positives = 83/198 (41%), Gaps = 7/198 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + L  +K ++   + ++ + +  +        ++R+G++   ++A+ +L+++    
Sbjct: 298 NGVKKKLAQLKSQLPPNLKITPLADQSVFVKASIDGVVREGVIAACLTALMILLFLG--- 354

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
                L    ++ L I  +L   +  G   N+  +  +   +G  V+D  V  + + +N+
Sbjct: 355 SLRSTLIIAVSIPLAILASLLALSALGQSINIMTLGGLALAVGILVDDATVEVENINRNL 414

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
                       I    ++    ++ ++++  I  +PM    G     F +P+A  +V A
Sbjct: 415 ---EQGKPIEQAILDGASQIAVPALVSTISICIVFVPMFFLTGVARYLF-VPLAEAVVFA 470

Query: 809 ASSSIFIAAPILLFIYDW 826
            ++S  ++  ++  +  +
Sbjct: 471 MAASYLLSRTVVPTMARY 488


>gi|226303829|ref|YP_002763787.1| hypothetical protein RER_03400 [Rhodococcus erythropolis PR4]
 gi|226182944|dbj|BAH31048.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
           PR4]
          Length = 784

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 80/650 (12%), Positives = 188/650 (28%), Gaps = 69/650 (10%)

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             +    +++             +  K +V+           F+      G      +D 
Sbjct: 101 ASIRGIDKVADSAKVDPATATPEQAAKALVNPVTGNDSMVAMFKEKAAAAGTSETRAVDD 160

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
               +P+                  +    L   + + +   +   +  +  G+      
Sbjct: 161 ARALSPLSADGTVGYVEVPFSGDFADLDQALRDSINSAADVGRAEGLNVQVSGSAAQEAE 220

Query: 361 IYKGTCAIV-AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA- 418
           +  G   ++   +  +VL +         +   +  + + +    +++    + L S+  
Sbjct: 221 MPGGVTELIGIAVAAVVLAITFGSLVAAGLPLLTAIIGIAIGSLGITVATGFMDLSSMTP 280

Query: 419 --GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
              I++G+ +A+D ++ +  R R E     +   +       A S +  + +T +IA V 
Sbjct: 281 TLAIMIGLAVAIDYSLFIMSRFRHELTLTDNRAEAAGRAVGTAGSAVVFAGLTVIIALVA 340

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
           L   G   +         ++LI++  A++++ A++    R      I            D
Sbjct: 341 LRVVGIPFLSDMGAAAAFTVLIAVLIALTLLPAILGMFGRKAFAGKIPFLSKRAEESEND 400

Query: 537 CIAIQFMRARFWGVGISILFSICSICL--------------------------------L 564
                 +  RF    +          +                                 
Sbjct: 401 DSGKPKLALRFITAVVRRPLVPLIGGVVLLGALALPATGLSLALPSEATGDPATSARQAY 460

Query: 565 FTHGLNYGIDFKGGIQLGVLANR--------PVDLSVVRSNLESLQIGDISFQNFDGEKN 616
                 +G    G +   V A            ++    S+   +Q   +   N  G   
Sbjct: 461 DLIDEGFGDGRNGPLIAVVDAKDASVPAGEAFAEVVSTISSFGDVQNAQVVGVNEAGNTA 520

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKI----TEIVPLSTIQNTEIVGPKISRELIRKGI-- 670
            ++          A   ++  ++         I     I     +   +S  L    +  
Sbjct: 521 QVLITPKSGPTDPATMDLVGSLRGAEAGLNDSIGVSYGITGQTALEGDVSDTLKDALVPY 580

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF------FALFGIE------F 718
           + V++    +L+ +  R      L A    +L +  T G           GI        
Sbjct: 581 LAVVVGLAFILLLLVFR-SILVPLTATLGFLLSVLATFGATVAIFQHGWLGIISNPQPLV 639

Query: 719 NLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMA 778
           +   +  +  + G +++ +V +  RMR+    Y    S ++ +    N    R V  +  
Sbjct: 640 SFMPIFLIGVVFGLAMDYQVFLVTRMREE---YVHGASAKEAVTIGFNH-GARVVSAAAV 695

Query: 779 AFISVLPMAVW-GGSVIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDW 826
             ISV    +    S I S    +A  +   A    + I   ++  + D 
Sbjct: 696 IMISVFGAFIAEPNSFIKSIGFALAAAVFFDAFIVRMVIIPSVMALLGDK 745


>gi|157377505|ref|YP_001476105.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
 gi|157319879|gb|ABV38977.1| acriflavin resistance protein [Shewanella sediminis HAW-EB3]
          Length = 1038

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 84/661 (12%), Positives = 192/661 (29%), Gaps = 46/661 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N    ++   +I   G L      +      + P     N                    
Sbjct: 10  NPAGTLVTLLLIAIFGALAIAKLPIQLLPDIQRPQISVFNNWR-------------SAAP 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            +  +  ++   + LR  +        ++ Q   +++L+F      +     V   L   
Sbjct: 57  QEMESNIIEPQENVLRQ-VPGVVEMTSNISQGFGRVSLTFEVGSNMQEAMINVINALNQT 115

Query: 123 NSKLNVDPKKNLLVTTTE---KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             +  +D  +  +          ++ +L +   D   +   +    I      ++     
Sbjct: 116 PPR-PLDANEPFINVGGGRGTPNLASLLIRMAPDNPDTDFAKYQKLIDDIVEPRLRQITG 174

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
                   R   +L    DP R   L  T  ++                      D  G 
Sbjct: 175 VGSVQLQSRRPKELHILFDPYRAAALGITLEQLRNTL--------------SRAADISGG 220

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              V  +                  T + + ++       R  +     ++    A V  
Sbjct: 221 TANVGRR--------QYMVRFIGQYTPENLGNLIVTYNDGRPVYINELADVAVSSAEVQG 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK--LNIVEERNVGADLG 357
                          G    +    +         L AG+L     +  +          
Sbjct: 273 FTKRNGYPAYYMTIEGTFDANTVTVLNGVNDAIDELNAGALKEAGLVMDLSFDASIHIKR 332

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +  + KG  AI   L L++LF  +   +  L+   +I + +++    L  +G TL + S+
Sbjct: 333 AILLVKGNLAIGVLLALVILFAFLRSFRATLMIASTIPVALLIAFFSLEAMGRTLNVISL 392

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
           AG+   +GL +D+ I+V E I    ++   +  +++ G  +    +  S  T +   V +
Sbjct: 393 AGLAFAVGLVLDAAIIVQENIVRLLQQGSRLRQAIEEGTGQVKGALMASTATTVAIFVPI 452

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F     G      A+T+ ++++ S  +AI+++  +   +      K+         +  
Sbjct: 453 LFMPGVEGQLFSDLALTLSVAVVSSFISAITLIP-VFSLLWLKLPGKAAPQMNRPNLWSK 511

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              +       +        L  I S  + F          +               S V
Sbjct: 512 LTRLIRTLTGDKKRATIWCALLIIGSGIMTFALMPRPDFLPQARSDGIFAFFSLPPGSNV 571

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
           ++  + +    I       +K     ++       +   VL +  +  ++   +  + N 
Sbjct: 572 QTLEKEVGDVIIERLKPYYDKEKSPYIKGYNFSMYSAFNVLFIYPEDPSQADEMIKLLND 631

Query: 655 E 655
           E
Sbjct: 632 E 632



 Score = 74.7 bits (181), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 80/262 (30%), Gaps = 16/262 (6%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
               G              S               +   +G  +          +     
Sbjct: 248 TYNDGRPVYINELADVAVSSAEVQGFTKRNGYPAYYMTIEGTFDANTVTVLNGVNDAIDE 307

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
                +K+       L    + +         L+ KG + + +    ++++      +  
Sbjct: 308 LNAGALKEA-----GLVMDLSFDASIHIKRAILLVKGNLAIGVLLALVILF-AFLRSFRA 361

Query: 693 ALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKL 750
            L  +    + +   + FF+L   G   N+ ++A +   +G  ++  ++V + +   ++L
Sbjct: 362 TL--MIASTIPVALLIAFFSLEAMGRTLNVISLAGLAFAVGLVLDAAIIVQENI---VRL 416

Query: 751 YTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVV 807
                  R  I++   +  G  + ++       +P+       G +    A+ ++  +V 
Sbjct: 417 LQQGSRLRQAIEEGTGQVKGALMASTATTVAIFVPILFMPGVEGQLFSDLALTLSVAVVS 476

Query: 808 AASSSIFIAAPILLFIYDWRAK 829
           +  S+I +     L       K
Sbjct: 477 SFISAITLIPVFSLLWLKLPGK 498



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 93/256 (36%), Gaps = 15/256 (5%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             A     +  +     ++    +   N     + L+          A   + E     + 
Sbjct: 770  QAAGIQTIGELAKIKRTVGPTQLQRVNGKRSVSLLIFPPADMSLDEALEIINEKAVPSLK 829

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
              +P ++         K+ + +   G   ++   I  L+   +      +L  + ++ L 
Sbjct: 830  ASLPTNSSLKFRGSADKLDQTIKDMGANFLLAVVILFLLMSAMFKSAKDSLLVLLSMPLA 889

Query: 704  I---TKTLGFFALFGIE-FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD 759
            I     +L    LF  +  +L  +   + L+G  VN+ +++ D+ R+  +     ++  D
Sbjct: 890  ICGGVLSLRLLNLFSFQSLDLLTMIGFIILLGLVVNNAILLVDQTRQGTRD---GLNIDD 946

Query: 760  LIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIF-- 814
             I +++         +++ +   +LP+ +    G  +    A  +  G+     S++F  
Sbjct: 947  AIYQAVATRARPVYMSTLTSIFGMLPLMLVPGVGSEIYRGLAAVIVGGM---TFSALFTL 1003

Query: 815  IAAPILLFIYDWRAKN 830
            I  P LL +    A+N
Sbjct: 1004 ILIPSLLRLTHLSARN 1019


>gi|83747997|ref|ZP_00945027.1| transmembrane transport protein [Ralstonia solanacearum UW551]
 gi|83725299|gb|EAP72447.1| transmembrane transport protein [Ralstonia solanacearum UW551]
          Length = 1090

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 78/640 (12%), Positives = 170/640 (26%), Gaps = 49/640 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRI---SLGLDLRGGSHL 56
           +R          ++  + +L+A P  L +   D FP   +P   I     GL        
Sbjct: 30  LRRPLT-----FIVLALLILLATPFVLMRMATDIFPEIDIPVCSIIWNYNGL-------- 76

Query: 57  VLEVDEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                    +   +   ++  L + +                I + F  +   +    ++
Sbjct: 77  -----PAKEMADRIVSVTERSLTTTVNDIEHIESQSLNGVAIIKVFFQPTANIQTALAQI 131

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    +L       L++  +   I I+    +   +     E +   +     ++ 
Sbjct: 132 VSVSQAQLRQLPPGITPPLVIKYSASSIPILQLGLSSTTLSEQ--ELNDAALNFLRPRLI 189

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                           Q+  + D  +L     T   +       N         +     
Sbjct: 190 TVPGIAVPFPYGGKSRQITVDLDTQKLLAQGLTPTDIVNAVSAQNLILPAGTQKIDASEY 249

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +           +++                     +                N+    +
Sbjct: 250 AVALNGTPGTIAQLNA--------------------MPVRTSNGATLVLGDVANVRDGFS 289

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L  +  A                  
Sbjct: 290 PQTNVVRQDGQRGVLLSILKNGGASTLDIVNNLYKLLPVASAALPQDIKITPLFDQSLFV 349

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L   ++ + +   +   +   SI L+++ ++ +L LLG T+ L 
Sbjct: 350 KAAIEGVIREALIAACLTAAMILLFLGNWRSTAIIAVSIPLSILSSIIVLHLLGETINLM 409

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I     + +    ++  G +      F S I   I  V
Sbjct: 410 TLGGLALAVGILVDDATVTIENIERHLHEGKEPVTAILDGAAEIAVPAFVSTICICIVFV 469

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRF 531
            +FF  G         A  +  ++L S   + ++V  +++ ++             LS F
Sbjct: 470 PMFFLTGVARYLFVPMAEAVIFAMLASYVLSRTLVPTLVMMLMTGHTEDAKKPGRGLSTF 529

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I      QF   R     I             +            + LG      VD 
Sbjct: 530 RRIYLAFNAQFEHMRGNYAAILGGLLERRRAFAMSFLGFCVASCALYLVLGRDFFPDVDA 589

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
             +R ++ +     I       ++         P + +A 
Sbjct: 590 GQIRLHMRAPSGLRIEETARLADEVEAAIRTLIPRNELAT 629



 Score = 70.5 bits (170), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 67/165 (40%), Gaps = 7/165 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            VG++++ + + + I + F  W   L  +T L   +        + G   ++ ++   +  
Sbjct: 915  VGLVMAIVLVYLLIVVNFQSWIDPLIIVTALPAALAGIAWMLFVTGTTLSVPSLTGAIMT 974

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + +++    R+ +      I+      ++    L   + T++A  I ++PMA+ 
Sbjct: 975  MGVATANSILLISFARERLHE---GIAPMQAALEAGATRLRPVLMTALAMIIGMVPMALG 1031

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G          +  G++ A  S++F    +   ++    + A
Sbjct: 1032 LGEGAEQNAPLGRAVIGGLLFATVSTLFFVPVVFASVHGRLQRRA 1076



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 74/191 (38%), Gaps = 7/191 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           ++L +    + + + ++ + +  +        +IR+ ++   ++A  +L+++     W  
Sbjct: 324 KLLPVASAALPQDIKITPLFDQSLFVKAAIEGVIREALIAACLTAAMILLFLG---NWRS 380

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                 ++ L I  ++    L G   NL  +  +   +G  V+D  V  + +    +   
Sbjct: 381 TAIIAVSIPLSILSSIIVLHLLGETINLMTLGGLALAVGILVDDATVTIENI---ERHLH 437

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                   I     E    +  +++   I  +PM    G     F +PMA  ++ A  +S
Sbjct: 438 EGKEPVTAILDGAAEIAVPAFVSTICICIVFVPMFFLTGVARYLF-VPMAEAVIFAMLAS 496

Query: 813 IFIAAPILLFI 823
             ++  ++  +
Sbjct: 497 YVLSRTLVPTL 507


>gi|228988664|ref|ZP_04148750.1| Swarming motility protein swrC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228771115|gb|EEM19595.1| Swarming motility protein swrC [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 1038

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/683 (10%), Positives = 194/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDISLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++      +       V  ++   M       +      K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASGPGSQNAGASTQVPQMNPAAMTGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRVLAWALNHKIITSSIAILLLVGSLALVPVIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|189218253|ref|YP_001938895.1| Cation/multidrug efflux pump [Methylacidiphilum infernorum V4]
 gi|189185111|gb|ACD82296.1| Cation/multidrug efflux pump [Methylacidiphilum infernorum V4]
          Length = 1063

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/549 (12%), Positives = 163/549 (29%), Gaps = 44/549 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLV--L 58
           +R    + ++ ++I  +GLL         +  D FP                  ++V   
Sbjct: 9   LRKPYTVAVMAALIFVMGLLTI-----ETTPTDIFPDIDIPV-----------VNVVWFY 52

Query: 59  EVDEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +    + +  F+  +S+  L  ++              N I + F      +    +   
Sbjct: 53  QGLTPEDMTNFITTFSEFNLSQYVDNVARMESRTYYGLNLIRMYFQPGVPIDLAVSEAVS 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
             Q V  ++ +      ++  +  E+ ++    +         +           ++   
Sbjct: 113 ICQTVIKRMPLGTTPPYVLRYSAAEVPVIQLAVSGK--TKSGADLFDYTWYIFRRELATI 170

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
                          +  +  P +L     T  ++                 +       
Sbjct: 171 RGATFPPPWGGTARFIRVDAYPDQLLARGITAQELMEVINNQVLDYASGDIKI------- 223

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                        G      + N  P   + + +I   ++  +  +      +    AV 
Sbjct: 224 -------------GDRDYLVSVNNMPTNVQEMNEIPIKKVNGQIVYMHDLGYVRDGGAVQ 270

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    +     L  + +A +                  
Sbjct: 271 WNFARYNGVPAVIMPLLKNGMASTLELVANLKKLLPVAKASAPEGIEIQELMDQSVFVRA 330

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S         I AGL  +++ + +   +  L+   SI L +++ L +LS +G T+ + ++
Sbjct: 331 SVEGVVKEGLIAAGLTGVMILVFLGSWRSTLIVLTSIPLCILVALFILSRMGNTINIMTL 390

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I   +   + +  ++  G  +  +  F + ++  I    +
Sbjct: 391 GGLALAVGILVDDATVEVENIHRNHGMGKPLIQAILDGAQQIANAAFVATLSICIVFTSV 450

Query: 478 FFFGGGA---VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
            F  G         A+ +  S+L S F + ++V  M   +IR +++         +    
Sbjct: 451 IFLEGPPKYLFTPMALGVVFSMLFSYFLSRTLVPTMANMLIRQEELIEHKRKIEGKALSR 510

Query: 535 PDCIAIQFM 543
                  FM
Sbjct: 511 FMRFHHWFM 519



 Score = 68.6 bits (165), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 78/205 (38%), Gaps = 7/205 (3%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               ++L + K    E + +  + +  +        ++++G++   ++ + +L+++    
Sbjct: 299 ANLKKLLPVAKASAPEGIEIQELMDQSVFVRASVEGVVKEGLIAAGLTGVMILVFLG--- 355

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W   L  +T++ L I   L   +  G   N+  +  +   +G  V+D  V  + +    
Sbjct: 356 SWRSTLIVLTSIPLCILVALFILSRMGNTINIMTLGGLALAVGILVDDATVEVENIH--- 412

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA 808
           + +         I     +    +   +++  I    +    G     F  PMA G+V +
Sbjct: 413 RNHGMGKPLIQAILDGAQQIANAAFVATLSICIVFTSVIFLEGPPKYLF-TPMALGVVFS 471

Query: 809 ASSSIFIAAPILLFIYDWRAKNARI 833
              S F++  ++  + +   +   +
Sbjct: 472 MLFSYFLSRTLVPTMANMLIRQEEL 496



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/203 (13%), Positives = 73/203 (35%), Gaps = 12/203 (5%)

Query: 629  VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
                +++  VKKK+     +      E +          +  +G+I + + +   + + F
Sbjct: 864  SDVQKIINDVKKKLPPAYEIHIRGQAESMQNAFG-----RLGLGIIFAILMVYFLLVVNF 918

Query: 689  K-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            + W      +  L       +    L G  F++ ++  ++  +G + ++ +++     + 
Sbjct: 919  QGWVDPFIILMALPAGFCGVIWMLYLTGTTFSVPSLMGMIMTVGVATSNSILLITFANEE 978

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFG 804
            M+              +    L   + T+ A  + +LPM++    GG         +  G
Sbjct: 979  MR---NGADAVTAAWMAGRIRLRPVLMTAGAMILGMLPMSLGLGEGGEQNAPLGRAVIGG 1035

Query: 805  IVVAASSSIFIAAPILLFIYDWR 827
            ++ A   ++F    +   I   +
Sbjct: 1036 MIFATVGTLFFVPVVFSIIRGRK 1058


>gi|163744379|ref|ZP_02151739.1| AcrB/AcrD/AcrF family protein [Oceanibulbus indolifex HEL-45]
 gi|161381197|gb|EDQ05606.1| AcrB/AcrD/AcrF family protein [Oceanibulbus indolifex HEL-45]
          Length = 1027

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/666 (10%), Positives = 185/666 (27%), Gaps = 49/666 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     V+L  +I   G    L   + +      P                      E  
Sbjct: 16  KRPVLAVVLNLLIIIAGAAAYLGVDIREMPNVDQPVLS--------------VRTTYENA 61

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V+  +    ++  S L+             ++ITL  + S      +++    + G
Sbjct: 62  APETVDTEVTAVLEDALSALEGVEAISSQSSFGSSRITLELSSSVDINTASNEAREIVAG 121

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           ++ +L  D  +  +         I+              + S     +   ++G  +   
Sbjct: 122 LSRQLPEDL-EPAVSKNDADADPIIRVALYGTA---SLEDLSRLAEDRVATELGGIDGIA 177

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     +     + + L     T   +S                            
Sbjct: 178 TVEVAGTQEYEYLVRLNMTALTGRGLTVEDVSTALAQ----------------------- 214

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +++   +  +            +   +V+        +         +           
Sbjct: 215 -LDNSAALGSLESADQKLTLKLASEDVLVEDIASLRIDKNTRLSDVALVQLTAVDRTVFS 273

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            ++  +     +      A L+         +    +      + + 
Sbjct: 274 RVNGQAAVAINVYRQSVANTLTISQDVAAALADLQLDMPDGVQMVTTADDGIYVEQALNE 333

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
              +  +   +V++VL+  +   +  L+   +I + +I TLA + + G ++   ++  +V
Sbjct: 334 VVSSILLAVVIVVLVLYAFLRSWRAVLIPALTIPVALIGTLAAIWMAGFSVNTITLLALV 393

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           L  G+ VD  I+V E +  + ++    + +   G +  +  +  +  T     + + F  
Sbjct: 394 LATGMVVDDAIVVVENVVRKRQEGLGRYAAAAEGANEVFFAVISTTATLAAVFIPISFLP 453

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              GG    F   +   + IS F A+++V  +   +   +  + +         L+   +
Sbjct: 454 GQAGGIFLEFGFVLAFCVTISSFVALTLVPMLAAVLDPGRTGEPVKEGSEGDASLLGRGL 513

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNY----GIDFKGGIQLGVLANRPVDLSVV 594
                RA    + +  L     +  +  +G         + +G   +   A   V  S  
Sbjct: 514 LWLVDRALALPILVVALALCFGVFSISLYGTLNSALTPTEDRGAFMVRARAPSGVSSSFT 573

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              ++ ++     +            +    G S      L    ++      +    N 
Sbjct: 574 DQQVQQIESMVAPYVESGEAAAVQSIVGLGGGTSAFVIVKLSDWSERDRSQEEIMAELNR 633

Query: 655 EIVGPK 660
           E     
Sbjct: 634 EFQAIT 639



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
                W   L    T+ + +  TL    + G   N   + A++   G  V+D +VV + +
Sbjct: 351 AFLRSWRAVLIPALTIPVALIGTLAAIWMAGFSVNTITLLALVLATGMVVDDAIVVVENV 410

Query: 745 RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPM 801
              ++     +       +  NE     + T+       +P++      G +   F   +
Sbjct: 411 ---VRKRQEGLGRYAAAAEGANEVFFAVISTTATLAAVFIPISFLPGQAGGIFLEFGFVL 467

Query: 802 AFGIVVAASSSIFIAAPILLFIYDWR 827
           AF + +++  ++ +   +   +   R
Sbjct: 468 AFCVTISSFVALTLVPMLAAVLDPGR 493



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 656  IVGPKISRELIRKGIVGV-IISAIAMLIYIWIRFKWYFALGAI-TTLILDITKTLGFFAL 713
              G   S E    GI  V  I+ + +L+ +  +F+   +   I   +   +   +   A+
Sbjct: 837  FTGEAASLETAENGIYMVFGIAFLIVLLVLSAQFESLISAAVIMLAVPFGLGAAVVAIAV 896

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   N  +   ++ LIG    + +++ +      +L     +    I  ++   L   +
Sbjct: 897  TGGSLNYYSQIGLVLLIGIMAKNGILIVEFAN---QLREAGATVDAAIRSAMRLRLRPVM 953

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
             T ++  +  +P+      G     +    M  G+  A   ++F+   +   +
Sbjct: 954  MTMVSTVLGGVPLIAATGAGAEARIAVGWVMVGGLGFATVFTLFLTPVLYRVL 1006


>gi|300698262|ref|YP_003748923.1| transport transmembrane protein [Ralstonia solanacearum CFBP2957]
 gi|299074986|emb|CBJ54555.1| putative transport transmembrane protein [Ralstonia solanacearum
           CFBP2957]
          Length = 973

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/640 (11%), Positives = 170/640 (26%), Gaps = 49/640 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRI---SLGLDLRGGSHL 56
           +R          ++  + +L+A P  L +   D FP   +P   I     GL        
Sbjct: 8   LRRPLT-----FIVLALLILLATPFVLMRMATDIFPEIDIPVCSIIWNYNGL-------- 54

Query: 57  VLEVDEDDFVNGFLQMYSD-ELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                    +   +   ++  L + +                I + F  +   +    ++
Sbjct: 55  -----PAKEMADRIVSVTERSLTTTVNDIEHIESQSLNGVAIIKVFFQPTANIQTALAQI 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
               Q    +L       L++  +   I I+    +   +     E +   +     ++ 
Sbjct: 110 VSISQAQLRQLPPGSTPPLVIKYSASSIPILQLGLSSTTLSEQ--ELNDAALNFLRPRLI 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                           Q+  + D  +L     T   +       N         +     
Sbjct: 168 TVPGIAVPFPYGGKSRQITVDLDTQKLLAQGLTPTDIVNAVSAQNLILPAGTQKIDASEY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +           ++                      +                N+    +
Sbjct: 228 AVALNGTPGTIAQL--------------------NAMPVRTSNGATLVLGDVANVRDGFS 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    +     L  +  A                  
Sbjct: 268 PQTNVVRQDGQRGVLLSILKNGGASTLDIVNHLYKLLPVAAAALPQDIKITPLFDQSLFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L   ++ + +   +   +   SI L+++ ++ +L LLG T+ L 
Sbjct: 328 KAAIEGVIREALIAACLTAAMILLFLGNWRSTAIIAVSIPLSILSSIIVLHLLGETINLM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I     + ++   ++  G +      F S +   I  V
Sbjct: 388 TLGGLALAVGILVDDATVTIENIERHLHEGKAPITAILDGAAEIAVPAFVSTLCICIVFV 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRF 531
            +FF  G         A  +  ++L S   + ++V  +++ ++             LS F
Sbjct: 448 PMFFLTGVARYLFVPMAEAVIFAMLASYVLSRTLVPTLVMMLMTGHTEDAKKPGPGLSTF 507

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
             I      +F   R     I             +            + LG      VD 
Sbjct: 508 RRIYLAFNARFEHMRGNYAAILGGLLERRRAFAMSFLGFCVASCALYLVLGRDFFPDVDA 567

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
             +R ++ +     I       ++         P + +A 
Sbjct: 568 GQIRLHMRAPSGLRIEETARLADEVEAAIRTLIPRNELAT 607



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 75/191 (39%), Gaps = 7/191 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           ++L +    + + + ++ + +  +        +IR+ ++   ++A  +L+++     W  
Sbjct: 302 KLLPVAAAALPQDIKITPLFDQSLFVKAAIEGVIREALIAACLTAAMILLFLG---NWRS 358

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                 ++ L I  ++    L G   NL  +  +   +G  V+D  V  + +    +   
Sbjct: 359 TAIIAVSIPLSILSSIIVLHLLGETINLMTLGGLALAVGILVDDATVTIENI---ERHLH 415

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
              +    I     E    +  +++   I  +PM    G     F +PMA  ++ A  +S
Sbjct: 416 EGKAPITAILDGAAEIAVPAFVSTLCICIVFVPMFFLTGVARYLF-VPMAEAVIFAMLAS 474

Query: 813 IFIAAPILLFI 823
             ++  ++  +
Sbjct: 475 YVLSRTLVPTL 485


>gi|330819651|ref|YP_004348513.1| acriflavin resistance protein [Burkholderia gladioli BSR3]
 gi|327371646|gb|AEA63001.1| acriflavin resistance protein [Burkholderia gladioli BSR3]
          Length = 1067

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/619 (10%), Positives = 156/619 (25%), Gaps = 58/619 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R     V+L  +I   G L  L     ++  D FP+                  +V + 
Sbjct: 8   LRRPHTFVVLALLIAIAGPLAIL-----RTPTDIFPNIDIPV-----------VSIVWQ- 50

Query: 61  DEDDFVNGFLQMYSDELRSF-----LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
             + F    +      +        +              + I + F           + 
Sbjct: 51  -YNGFSAEDMAHRITSIYERALTTDVDDIEHIESQSLNGVSVIKVFFHPGADINRAIAQA 109

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
                 +   +        ++T +   + I+    +   +     +           Q+ 
Sbjct: 110 VSNASSILRVMPPGTLPPNVITYSASTVPILQLGLSSRTLAEQ--QLYDLGNSFIRTQLA 167

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
             +     L     +  +  + DP  L+    +   +       N    G    +     
Sbjct: 168 TVQGAAVPLPFGGKVRSIVVDLDPRALQAKGLSPIDVVNAVNAQNLILPGGSAKIGAREY 227

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
           +       +    +                     D+     G    +     ++     
Sbjct: 228 NVQMNGSTQTIAAL--------------------NDLPVKTAGGGVIYLRDVAHVRDGYI 267

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
              +                    S    I     L   + AG                 
Sbjct: 268 PQTNIVRADGKRAALLTVEKTGSASTLSIIGEVKALLPQIAAGLPKALSITPLADQSVFV 327

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +         I A L  +++ + +   +  L+   SI L V+ +L  LS LG T+ + 
Sbjct: 328 KSAIQGVAREALIAACLTALMILLFLGSWRATLIIAVSIPLAVLSSLLALSALGQTINIM 387

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+ L +G+ VD   +  E I     +   +  ++  G          S ++  I   
Sbjct: 388 TLGGLALAVGILVDDATVAIENITHHLERGAPLEDAILTGAGEIAVPTLVSTLSICIVFA 447

Query: 476 VLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFI----------IRYKKMKS 522
            +F   G         A  +  +++ S   + ++V  + +++             +  + 
Sbjct: 448 PMFLLTGVARYLFVPMAEAVIFAMVASYLLSRTLVPTLAMWLLRAPSGTARGSFARFQRG 507

Query: 523 IDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +             +       R    G  +          F     +     G I+L 
Sbjct: 508 FEHRFDMVRARYRGLLDGAIRHRRAVIAGFVLACLASCSLFAFAGRDFFPAVDTGEIRLH 567

Query: 583 VLANRPVDLSVVRSNLESL 601
           + A     +       + +
Sbjct: 568 LRAPTGTRIEQTARLADEV 586



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 4/155 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +I + +  L+ +     W   L    ++ L +  +L   +  G   N+  +  +   +G
Sbjct: 338 ALIAACLTALMILLFLGSWRATLIIAVSIPLAVLSSLLALSALGQTINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +              D I     E    ++ ++++  I   PM +  G
Sbjct: 398 ILVDDATVAIENI---THHLERGAPLEDAILTGAGEIAVPTLVSTLSICIVFAPMFLLTG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                F +PMA  ++ A  +S  ++  ++  +  W
Sbjct: 455 VARYLF-VPMAEAVIFAMVASYLLSRTLVPTLAMW 488



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/155 (13%), Positives = 55/155 (35%), Gaps = 8/155 (5%)

Query: 668  KGIVG-VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             G++  ++ +   + + + + F  W      ++ L   +              ++ A+  
Sbjct: 888  SGLLAGLVFAVGLVYLLMVVNFQSWIDPAVIVSGLPASLAGIAWMLFATHTTLSVPALTG 947

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             +  IG +  + ++V +  R+ ++             ++        V T++A  I +LP
Sbjct: 948  TILCIGIATANSILVVNAAREMLRE---GAPPWQAALEAGFTRFRPVVMTALAMLIGMLP 1004

Query: 786  MAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            MA+    GG         +  G+     S++    
Sbjct: 1005 MALGLGDGGEQNAPLGRAVIGGLAFGTVSTLLFVP 1039


>gi|193078580|gb|ABO13608.2| RND divalent metal cation efflux transporter [Acinetobacter
           baumannii ATCC 17978]
          Length = 1052

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 62/616 (10%), Positives = 162/616 (26%), Gaps = 60/616 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  W+++       +G+         +  +D  P                   +  + +
Sbjct: 24  QNAIWVMLFVLAWIGVGIWS-----YQKLPIDAVPDITNTQ-----------VQINTQAN 67

Query: 62  EDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +   + +          R   +++T+ F D          +   L
Sbjct: 68  GYTALEVEQRITYPIENAMAGIPNLEQTRSISRYGLSQVTIIFKDGTDIYWARQLINQRL 127

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRIDQ 173
           Q  + +L       +   +T                   D     A++           Q
Sbjct: 128 QEADGQLPESVDPIMSPVSTGLGEIYQWVVKAKSGAKKADGTAYTAMDLREIQDWIVRPQ 187

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   +               D  RL+QL  +  +        N ++          
Sbjct: 188 LQRVKGVAEINSIGGYNKTYIVSPDLKRLQQLQISINEFQTALQENNENRGAGFIEENGE 247

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           + +     ++    +I                     +I+           V   N+   
Sbjct: 248 QLTVRVPGMLSSVEDIQ--------------------NITVSTKNGLPIRVVDVANVSIG 287

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +               I       +     +        +++                
Sbjct: 288 HDLRTGAATYNGEETVLGIAMMMMGENSRTVAQAVDAKIKEIQSTLPKGVEIETVYDRTS 347

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +  +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  
Sbjct: 348 LVNKAIATVQKNLVEGAILVIVILFIFLGNFRAALITACVIPLSMLFTLTGMAEQNISAN 407

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTI 463
           L S+  +  GI   VD  +++ E       + Q            F  + +   +A   +
Sbjct: 408 LMSLGALDFGII--VDGAVVIVENCIRRLAEAQHALHRPLTRSERFKEVFLAAKQARRPL 465

Query: 464 FDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               +  L+  + +F   G         A+T+ +++L +M  +++ V A +   +  +  
Sbjct: 466 IFGQMIILVVYLPIFALSGVEAKMFHPMAMTVVMALLGAMILSVTFVPAAVALFVTGEVK 525

Query: 521 KSIDINPLSRFFLIPDCI-AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           +              D +     ++       +SIL     +           +      
Sbjct: 526 EKETRWMQLLKQKYRDVLDQAYQLKIVVVSFALSILVLTGVLATQMGSEFAPQLSEGDFA 585

Query: 580 QLGVLANRPVDLSVVR 595
              + +        +R
Sbjct: 586 LQQMRSPSTGLEQSLR 601



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 76/251 (30%), Gaps = 35/251 (13%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  ++      Q         V +          + V E+      E +P        
Sbjct: 815  QDVAKVERTSGLNQVGRENGKRRVIITANVEGRDLGSFVQELRTTLAKEQLPAGYWLEYG 874

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                 ++    R   + V ++   + I +               +  ++ ++L  F+   
Sbjct: 875  GQFENLASAAAR-MKIVVPLALAMIFILLM-------------AVFHNVKESLLVFSGVP 920

Query: 716  IEFNLTAVA--------------AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               +   +A                + L G +V + +V+   +++           +   
Sbjct: 921  FALSGGLIALWLRDIPLSMSAGVGFIALSGVAVLNGLVMLSFIKE----LREKFDIQTAT 976

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   L   + T+  A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 977  WNGAILRLRPVLMTACVASLGFIPMALATGTGAEVQRPLATVVIGGIISSTILTLVLLPV 1036

Query: 819  ILLFIYDWRAK 829
            I  ++ + + K
Sbjct: 1037 IYRWMNENKTK 1047


>gi|194333088|ref|YP_002014948.1| acriflavin resistance protein [Prosthecochloris aestuarii DSM 271]
 gi|194310906|gb|ACF45301.1| acriflavin resistance protein [Prosthecochloris aestuarii DSM 271]
          Length = 1069

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 83/677 (12%), Positives = 189/677 (27%), Gaps = 36/677 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N+    +L      +G+L            +  P            DL    +       
Sbjct: 15  NSKLTPLLMLTALLVGVLATFMT-----PREEEPQISVPLV-----DL----YFSYPGGS 60

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    ++  + +        + ++    +T+ +      E    K+   +   
Sbjct: 61  AREVKERVAKPVEKYLTEIDGVKYVYSTSQKDFALVTVRYEVGDDTEESLVKLWATIMKN 120

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++    +  L+   T  ++  +      D    +   Q  ++  +  D++    +   
Sbjct: 121 MDRMPQGMQPPLIKKVTIDDVPALTLTFWSDS---YGPYQLRKVAAEVADELKNISNIGD 177

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +  +  QL    D   L +   T  +++      N+      F              
Sbjct: 178 VNLNGGLKRQLRIILDKDALARYRITPLQIARQIKASNSQLTAGTFQEMNREFVVRTGQF 237

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   ++ GI +    +          V    +E+    FF     +         D  +
Sbjct: 238 LKSAEDVRGIIVGLYNSGPVYLGDVAEVIDGPEEVENYAFFGKGAAS--------SDETL 289

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      + +                  L    +   +N+ E RN G         
Sbjct: 290 RGEYPAVTLTVAKRKGTDATALANQVLAKVDALEGTVITSGINVTETRNYGETASEKVFT 349

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A + + ++  + L  + GLV   S+ +   LTL +  L   TL   ++  ++ 
Sbjct: 350 LLEHLIGAVVAVTIVVGLFLGWRGGLVVFASVPITFALTLLVYYLFDYTLNRVTLFALIF 409

Query: 423 GIGLAVDSNILVNERIREENRKNQSVF--CSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
             G+ VD +I++ E I       +      ++         TI  +         ++F  
Sbjct: 410 VTGIVVDDSIIIAENIHRHFSMRRMPKLQAAIAAINEVGNPTILATFTVIASVLPMVFVS 469

Query: 481 G--GGAVRGFAITMGLSILISMFTAISIVRAMMIFI-------IRYKKMKSIDINPLSRF 531
           G  G  +    I   L+++ S+F A+     +   +            +K      +   
Sbjct: 470 GLMGPYMSPMPIGASLAMIFSLFVALIGTPWLAFRLLKAEDGHEEEYDIKKSLYYKVFDR 529

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L P   +       F  V + +  +I  I L          D K   Q+ V       L
Sbjct: 530 TLTPLIDSWWKTALVFVFVTLLLGGAISMIPLKMVELKMLPFDNKSEFQVIVDMPEGTTL 589

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
                  + +     +       + ++        + + +   L          V L   
Sbjct: 590 EETARATKDIVSYLKTEPEVKDYQYYVGTGAPINFNGLVRHYYLRQNDNMADIQVNLVHK 649

Query: 652 QNTEIVGPKISRELIRK 668
            +       I++ +  K
Sbjct: 650 NDRSAQSHDIAKRVRPK 666



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/144 (21%), Positives = 63/144 (43%), Gaps = 3/144 (2%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I + +A+ I + +   W   L    ++ +    TL  + LF    N   + A++ + G 
Sbjct: 354 LIGAVVAVTIVVGLFLGWRGGLVVFASVPITFALTLLVYYLFDYTLNRVTLFALIFVTGI 413

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V+D +++ + +          +        +INE    ++  +     SVLPM V+   
Sbjct: 414 VVDDSIIIAENIH--RHFSMRRMPKLQAAIAAINEVGNPTILATFTVIASVLPM-VFVSG 470

Query: 793 VIGSFAIPMAFGIVVAASSSIFIA 816
           ++G +  PM  G  +A   S+F+A
Sbjct: 471 LMGPYMSPMPIGASLAMIFSLFVA 494



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 58/168 (34%), Gaps = 31/168 (18%)

Query: 686  IRFKWYFALGAITTLILDI--TKTLGFF------------------------ALFGIEFN 719
            I F+ +  LGA   ++L I     +G+F                         + G  F 
Sbjct: 905  ITFEVFRDLGAAFAVVLVIIYLLIIGWFQSFKTPLVMMVAIPLSLVGIIPGHYVHGAFFT 964

Query: 720  LTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA 779
             T++  ++ L G  V + V++ D +          I  +  + +S        + T+   
Sbjct: 965  ATSMIGMIALAGIMVRNSVLIIDFI---QLRVQEGIELKQAVIESAAVRTRPILLTAGTV 1021

Query: 780  FISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             I  + +      +    AI + +G +++   ++ +   +  F+    
Sbjct: 1022 VIGAIVILF--DPIFQGLAISLMWGAMLSTVLTLGVVPLLYYFVEKKN 1067


>gi|294142990|ref|YP_003558968.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
 gi|293329459|dbj|BAJ04190.1| AcrB/AcrD/AcrF family protein [Shewanella violacea DSS12]
          Length = 1036

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 73/576 (12%), Positives = 175/576 (30%), Gaps = 41/576 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N    ++   +I   G+L        +  +   P   P          +   +       
Sbjct: 10  NPAGTLVTLLLIMIFGILAIA-----KLPIQLLPDIQPP---------QISVYNNWRSAA 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +    + +   +        ++ Q    I+L+F      +     V   L   
Sbjct: 56  PQEMESNIIEPQENVLRQVPGVIEMTSNISQGFGAISLTFEVGNNMQEAMINVINALNQT 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISI--VLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
             +  +D  +  +        ++  +L +   D   +   +    I      ++      
Sbjct: 116 PPR-PLDANEPYINVGGGGAPNLASLLIRMTPDNPNTDFSKYQKLIDDVVEPRLRRITGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                  ++  +L    DP R   L  T  ++        N   G         +    Q
Sbjct: 175 GSVQLHSKLPKELHILFDPYRAAALGITLDQLRSTLSRATNISGG-------TANVGRRQ 227

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
           Y V    + +  +L      ++      + +++   +        T+ N      + L G
Sbjct: 228 YTVRFLGQYTPENLGKLIVTYNEGRPVYLNELADVSVSTAEVQGFTKRNGYLAYYITLQG 287

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                 V      +          ++ A               +  +          +  
Sbjct: 288 TFDANTVTVLEGVNQAIAELNEAELKDA-------------GLIIDLSFDASVHIKRAIL 334

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
           + K   A+   L LI+LF  +   +  L+   +I + +++    L  +G TL + S+AG+
Sbjct: 335 LVKSNLAVGVLLALIILFAFLRSFRATLMIASTIPVALLIAFFSLEAMGRTLNVISLAGL 394

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
              +GL +D+ I+V E I    +K + +  ++  G  +    +  S +T +   + + F 
Sbjct: 395 AFAVGLVLDAAIIVQENIVRLLQKGEPLADAIAKGTEQVRGALMASTVTTVAIFLPILFM 454

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G      A+T+ ++++ S  +AI+++  +   +      K+   +     +     
Sbjct: 455 PGVEGQLFSDLALTLSVAVVSSFISAITLIP-VFSLLWLKLPKKTQAHSDKPDLWHKLTE 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGI 573
           +  +             L  + S  L F        
Sbjct: 514 LIRKLTGENKRAASWCGLLILGSGILTFALMPRPDF 549



 Score = 80.1 bits (195), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/208 (12%), Positives = 74/208 (35%), Gaps = 11/208 (5%)

Query: 629 VAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF 688
               + +  + +   +   L    + +         L+ K  + V +    ++++     
Sbjct: 298 EGVNQAIAELNEAELKDAGLIIDLSFDASVHIKRAILLVKSNLAVGVLLALIILF-AFLR 356

Query: 689 KWYFALGAITTLILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
            +   L  +    + +   + FF+L   G   N+ ++A +   +G  ++  ++V + +  
Sbjct: 357 SFRATL--MIASTIPVALLIAFFSLEAMGRTLNVISLAGLAFAVGLVLDAAIIVQENI-- 412

Query: 747 NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAF 803
            ++L        D I K   +  G  + +++      LP+       G +    A+ ++ 
Sbjct: 413 -VRLLQKGEPLADAIAKGTEQVRGALMASTVTTVAIFLPILFMPGVEGQLFSDLALTLSV 471

Query: 804 GIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +V +  S+I +     L       K  
Sbjct: 472 AVVSSFISAITLIPVFSLLWLKLPKKTQ 499



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 58/149 (38%), Gaps = 17/149 (11%)

Query: 695  GAITTLILDITKTLGFFAL------FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
              +  L + +    G  +L           +L  +   + L+G  VN+ +++ D+ R+  
Sbjct: 878  SLLVLLSMPLAICGGVVSLRLLNLISFQSLDLLTMIGFIILLGLVVNNAILLVDQTRQGT 937

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
            +     ++  D I +++         +++ +   +LP+ +    G  +    A  +  G+
Sbjct: 938  RD---GLNIDDAIYQAVATRARPVYMSTLTSIFGMLPLMLVPGVGSEIYRGLAAVIVGGM 994

Query: 806  VVAASSSIF--IAAPILLFIYDWRAKNAR 832
                 S++F  I  P LL +       AR
Sbjct: 995  ---TFSALFTLILIPSLLKLSHSLTPRAR 1020


>gi|188582194|ref|YP_001925639.1| acriflavin resistance protein [Methylobacterium populi BJ001]
 gi|179345692|gb|ACB81104.1| acriflavin resistance protein [Methylobacterium populi BJ001]
          Length = 1058

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 71/524 (13%), Positives = 157/524 (29%), Gaps = 28/524 (5%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN      L   +C  GL++A    L +  +D  P                   ++ E +
Sbjct: 7   RNALLNRALVLALCL-GLVLAGGLALTRLPVDVLPDLNRPT-----------VTVMTEAE 54

Query: 62  E--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +   + L              + +T+ F            V   L
Sbjct: 55  GYAPPEVEQLVTYPIETRMNGLPGVTRVRSVSSAGLSIVTVEFGWDTDLYRDRQFVAERL 114

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
             V S+L       +    +     ++++  +         E +  I+R    ++     
Sbjct: 115 ALVRSELPTGVVPQMGPVASIMGGILLVAVTSEQASPMQVRETADFILR---PRLLSIPG 171

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q +     + Q     +P+ +R L  +   ++        +  G             N
Sbjct: 172 VAQVIPIGGEVRQFRVSPNPAAMRALGVSNEALANALSGFGTNAGGGFADANAREILIRN 231

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
                   ++  + +             P       E               +P     D
Sbjct: 232 IGRTVSLEDLRSLVIPTGPQGATAAADLPGTGNPAMEGRVYLRQIADVAFAARP--KRGD 289

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
           G     P +  ++       +   T      L  +       +    +  R       S 
Sbjct: 290 GGYRGEPAVILSVEKQPGVDTVRLTQAVEAALREIAPTLPQGMDAQKILFRQADFIETSL 349

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  +        +V +VLF  ++  +  L++  +I ++++ T  +   LG ++   ++ G
Sbjct: 350 ANVERVLLEAVAVVAVVLFAFLMNARTTLISLTAIPVSILTTALVFWALGFSINTMTLGG 409

Query: 420 IVLGIGLAVDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + + IG  VD  ++  E I    R+N      +SVF  +    S   S I  +    ++ 
Sbjct: 410 LAIAIGELVDDAVVDVENIFRWLRENRAEGSPRSVFDVVVAASSEVRSGIVYATAIIVLV 469

Query: 474 TVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            V LF      G           ++IL S+  ++++   +  ++
Sbjct: 470 FVPLFALSGIEGRLFAPLGQAYIVAILASLLVSVTLTPVLASWL 513



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 8/137 (5%)

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM----RKNMK 749
           L ++T + + I  T   F   G   N   +  +   IG  V+D VV  + +    R+N  
Sbjct: 378 LISLTAIPVSILTTALVFWALGFSINTMTLGGLAIAIGELVDDAVVDVENIFRWLRENRA 437

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI---PMAFGIV 806
             +   S  D++  + +E     VY +    +  +P+    G     FA         I+
Sbjct: 438 EGSPR-SVFDVVVAASSEVRSGIVYATAIIVLVFVPLFALSGIEGRLFAPLGQAYIVAIL 496

Query: 807 VAASSSIFIAAPILLFI 823
            +   S+ +   +  ++
Sbjct: 497 ASLLVSVTLTPVLASWL 513



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 83/237 (35%), Gaps = 9/237 (3%)

Query: 595  RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
            R   +  +    +    +  +  +V      G +     +  + +      +P       
Sbjct: 802  REIADIRETDGPNQILRENSRRRIVVQANSDGRTDMGQIIAGIRRVLDETRLPEGVSPRL 861

Query: 655  EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT--LILDITKTLGFFA 712
            E             G + + +S   +   +  R++    L  I    + L +  ++    
Sbjct: 862  EGTYEAQGEAARTIGGLSL-VSLALVFALLHGRYR-SVPLALIVMGNVPLALIGSVLALW 919

Query: 713  LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
            + G+  ++ ++   +TL G    + ++    M    +     +    +I  S+ E +   
Sbjct: 920  IAGLPLSVASMIGFVTLTGIVARNGILKISHMLNLARDEGLPLGPALVIRASL-ERMTPV 978

Query: 773  VYTSMAAFISVLPMAVWGG----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            + T+MAA I+++P+ + G      ++   A+ +  G++ A      +   ++L    
Sbjct: 979  LMTAMAAGIALVPLLIDGDAPGKEILHPVAVTIFGGLMSATLLDAVLTPVLVLMFGR 1035


>gi|152990648|ref|YP_001356370.1| CzcA family heavy metal efflux protein [Nitratiruptor sp. SB155-2]
 gi|151422509|dbj|BAF70013.1| heavy metal efflux pump, CzcA family [Nitratiruptor sp. SB155-2]
          Length = 1024

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 71/604 (11%), Positives = 164/604 (27%), Gaps = 49/604 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +L+ L++++       A+     ++ LD  P   P   I           +      
Sbjct: 11  KNRFLIFLFALVFAGASYWAI----KKTPLDAIPDLTPPQVI---------IQIKFPGQS 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +          +                I + F D     +   +V   L  V
Sbjct: 58  PKIIEDQVTYPLTSSFLAISDIDTVRGFSTYENALIYIIFKDGTDLYDARTRVLEELSKV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  + + +L    +        +  +         +            +   +   +
Sbjct: 118 APTLPKNAEVSLGPDASGVGWVYEYALISST---KDLAQLRTYQDYTLKYALLGIDGVSE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  +       D  +L +   +   +     L NN   G +            +  
Sbjct: 175 VASVGGFIPNYQVTIDNHKLIEHGLSVKDIVKTLELNNNDVGGGITIQNGYEWMIQARGY 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   EI  + +               V+ +              + +G  +        
Sbjct: 235 IKSLQEIEELPVKTKRKIPLKIKDIARVEWTALPRRGLADLNGQGEVVGGIVIAKY---- 290

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                             G     T   +   L+         I           + S  
Sbjct: 291 ------------------GADVYATIKKVKDKLQKLQTKDIKIIPTYDRSRLIEDAVSTL 332

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T    + +VL+V+   + + +  L+    + L + LT  L+ + G    + S+ GI +
Sbjct: 333 KDTLIEESIIVLVVIGFFLFHFRSTLIVLIVLPLTIGLTFLLMKIFGIGSNIMSLGGIAI 392

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFC--------SLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD++I++ E   ++    ++            +     +    IF +    +++ 
Sbjct: 393 AIGAMVDASIVMIENAHKKLDSIKNKKALTPSKRVSLIIESCQQVGRPIFFALALVVVSF 452

Query: 475 VVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           + +F   G         A T   ++ +    AI+IV A+MI+ I+    +  +       
Sbjct: 453 LPIFAMQGQEGKLFTPLAFTKTFAMSVGAILAITIVPALMIWFIKDVPDEKKNPINRFFI 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
           +L    I I       +      L                    +G +    +    + +
Sbjct: 513 WLYHPFIVIGLKLRYIFIPLAIALLLFSYQLYKKLKWEFMPPLNEGVLMYMPVTPYGISI 572

Query: 592 SVVR 595
              +
Sbjct: 573 DQAK 576



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 78/230 (33%), Gaps = 11/230 (4%)

Query: 611 FDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGI 670
                  +V  +Y         +V + ++K  T+ + +    +   +       L    I
Sbjct: 278 QGEVVGGIVIAKYGADVYATIKKVKDKLQKLQTKDIKIIPTYDRSRLIEDAVSTLKDTLI 337

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
              II  + +  ++   F +   L  +  L L I  T     +FGI  N+ ++  +   I
Sbjct: 338 EESIIVLVVIGFFL---FHFRSTLIVLIVLPLTIGLTFLLMKIFGIGSNIMSLGGIAIAI 394

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVLP 785
           G  V+  +V+ +   K +       +        LI +S  +      +      +S LP
Sbjct: 395 GAMVDASIVMIENAHKKLDSIKNKKALTPSKRVSLIIESCQQVGRPIFFALALVVVSFLP 454

Query: 786 MAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +    G     F   A    F + V A  +I I   ++++         +
Sbjct: 455 IFAMQGQEGKLFTPLAFTKTFAMSVGAILAITIVPALMIWFIKDVPDEKK 504



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/153 (22%), Positives = 61/153 (39%), Gaps = 13/153 (8%)

Query: 692  FALGAITT-----LILDITKTLGFFAL--FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM 744
            FALG I       L L      G   +   G   ++  V   L L+G +    +V+   +
Sbjct: 873  FALGEIVPTLFVFLSLPFAFLGGLLYIDHLGFNMSVAVVVGFLALLGIAAETAIVMIIYL 932

Query: 745  RKNMKLYTT--SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAI 799
            +++++ Y         + I +   + +   + T  A    +LP+      G  V+   A 
Sbjct: 933  KESVEKYEKLDKKLLVEAIYEGAVQRVRPKLMTVFAILAGLLPIMYTNKTGSEVMQRIAA 992

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            PM  G+  +A  S+ I  P+L  IY   +K  R
Sbjct: 993  PMIGGVATSAVLSLIII-PLLYMIYIQISKKIR 1024


>gi|317050234|ref|YP_004111350.1| heavy metal efflux pump, CzcA family [Desulfurispirillum indicum
           S5]
 gi|316945318|gb|ADU64794.1| heavy metal efflux pump, CzcA family [Desulfurispirillum indicum
           S5]
          Length = 1042

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 78/594 (13%), Positives = 169/594 (28%), Gaps = 41/594 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +RN   +++    +   G+       L ++ LD  P       I                
Sbjct: 10  LRNRLLVLMASIFLALWGMYS-----LQKTPLDAIPDLSDVQVI---------IKTTYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          + K            + I + F D         +V  +L 
Sbjct: 56  QAPQVVEQQVTYPLSSALLAVPKATAVRGYSMFGDSYIYVLFEDGTDLYWARARVLEYLS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L  +   +L    T                     +           ++   E  
Sbjct: 116 QAAGSLPPEATPSLGPDATGVGWVYQY-ALVDRTGNHDLGQLRSIQDWFLKYELQTVEGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ Q     DP RLR    +TA +S      N    G    +         +
Sbjct: 175 SEVATVGGMVRQYQITVDPFRLRSYGLSTADVSRAVQRANLESGGSAIEMAEAEYMIRAK 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   ++                    V +     G         + I  P       
Sbjct: 235 GYIQSVEDLR------------------QVPLKVGSSGTPLLLGDVAEIITGPQMRRGIA 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +     +   I   ++  +    IE        +R G       +           +  
Sbjct: 277 ELDGEGEVVGGIVVMRSGENALAVIERVKARIDEIRDGLPEGVEIVETYDRSSVIERAME 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             + T      +V++V  + +L+ +  LV   S+ L V+    ++ L G    + S+ GI
Sbjct: 337 NLRDTLIKELIVVVLVCLLFLLHFRSSLVIAISLPLGVLGAFVIMQLQGINANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ-----SVFCSLDMGFSRAYSTIFDSNITALIATV 475
            + IG  VD+ I++ E   +   + +       +  +    +     +F + +   I+ +
Sbjct: 397 AIAIGAMVDAAIVMIENAHKHLERRKADSDEDHWAIISRASTEVGPPLFFALLIITISFL 456

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   ++ ++   AI++V  +M + IR +              
Sbjct: 457 PVFTLEAQEGRLFAPLAFTKTYAMAVAAGLAITLVPVLMGYFIRGRITPEHKNPINRVLV 516

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           ++   +    +R     V ++IL +   I  +   G  +  +   G  + +   
Sbjct: 517 VMYQPMIKAALRFPGTIVVLTILAAASMIYPVTKLGSEFMPELDEGDLMYMPTT 570



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 81/260 (31%), Gaps = 18/260 (6%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
             +   V L  V     +     I  +N        V +Q +            + +    
Sbjct: 785  PSGAWVALEQVARVEITDGPPMIRSENARLSGWTYVDIQGRDLGGYVAEARDAVNRFIEL 844

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLIL 702
                  +         + +  L     V V ++   +++ +++ F +   AL  + TL L
Sbjct: 845  PAGYSISWSGQYEYMERANERLK----VVVPLTLAIIMLLLYLSFGRVGEALLIMATLPL 900

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS------ 756
             +        L     ++      + L G +    VV+   + + ++    + +      
Sbjct: 901  SLVGGFWLLHLLDYNLSIAVSVGFIALAGVAAETGVVMLVYLDQALRARQKNATSEGRRV 960

Query: 757  ----FRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                 R+ + +     +   V T     I +LP+ +    G  V+   A PM  G+V A 
Sbjct: 961  SLNELREAVIEGALLRVRPKVMTVATIIIGLLPIMLSTGTGSEVMRRIAAPMVGGMVSAT 1020

Query: 810  SSSIFIAAPILLFIYDWRAK 829
              ++ +           + K
Sbjct: 1021 VLTLVVLPAAYYLWKRIQLK 1040



 Score = 46.2 bits (107), Expect = 0.025,   Method: Composition-based stats.
 Identities = 25/143 (17%), Positives = 52/143 (36%), Gaps = 5/143 (3%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK--N 747
           +  +L    +L L +        L GI  N+ ++  +   IG  V+  +V+ +   K   
Sbjct: 360 FRSSLVIAISLPLGVLGAFVIMQLQGINANIMSLGGIAIAIGAMVDAAIVMIENAHKHLE 419

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFG 804
            +   +      +I ++  E      +  +   IS LP+          F   A    + 
Sbjct: 420 RRKADSDEDHWAIISRASTEVGPPLFFALLIITISFLPVFTLEAQEGRLFAPLAFTKTYA 479

Query: 805 IVVAASSSIFIAAPILLFIYDWR 827
           + VAA  +I +   ++ +    R
Sbjct: 480 MAVAAGLAITLVPVLMGYFIRGR 502


>gi|300776589|ref|ZP_07086447.1| CzcA family heavy metal efflux pump [Chryseobacterium gleum ATCC
           35910]
 gi|300502099|gb|EFK33239.1| CzcA family heavy metal efflux pump [Chryseobacterium gleum ATCC
           35910]
          Length = 1454

 Score =  121 bits (303), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 83/680 (12%), Positives = 185/680 (27%), Gaps = 52/680 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNR--ISLGLDLRGGSHLVLE 59
           +N   + I+  ++   G+  A      +  +D  P         I++   L G       
Sbjct: 11  KNKIVIGIMTLLLIIWGVWSA-----TKLPIDATPDITNNQVQIITVCPTLAG------- 58

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    ++  + +          R   + IT+ F +          VT  L
Sbjct: 59  ----QEVEQLVTFPIEQSIANVPDIEETRSISRFGLSVITVVFKEEVDIYFARQLVTEKL 114

Query: 120 QGVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
           +    ++           + T   +    +L      +    A E           Q+  
Sbjct: 115 KQAEEEIPQGVGTPELAPVSTGLGEVYQYILHPKKGSEKKYDAKELRTMQDWIVRRQLNG 174

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
           +    +       L Q     +P RLR +  + + +       N +  G     +     
Sbjct: 175 TPGVAEINSFGGQLKQYEVAVNPDRLRAMGVSISDIFTALEKNNQNTGGAYIDKKPNAYF 234

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                LV    +                       +  +  G+   F      +    AV
Sbjct: 235 IRGIGLVTSLED-------------------AGNIVVKNNTGSVPIFIKDVAEVRLGSAV 275

Query: 297 VLDGRVLTAPV-INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
                     V     +       + N  +        +++       +           
Sbjct: 276 RYGAMTFNGQVDAVGGVVMMLKGANSNEVVNRIKEKIPVIQKSLPADVVIEPYLDRTDLV 335

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
             +    +      A +V+ VL + +   + GL+   +I L+++  L ++++ G +  L 
Sbjct: 336 GRAIDTVEKNLIEGALIVIFVLVIFLGNLRAGLIVASAIPLSLLFALGMMNVFGVSANLM 395

Query: 416 SIAGI--VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI----- 468
           S+  I   L +  AV         +     K       +D     + S I  S       
Sbjct: 396 SLGAIDFGLIVDGAVIIVEATLHHLGLNKSKKMLTQAEMDEEVFLSASKIRSSAAFGEII 455

Query: 469 --TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
                I  + L    G      A T+G +IL ++  +++ +  M    +  K     + +
Sbjct: 456 ILIVYIPILTLVGVEGKMFTPMAKTVGFAILGALILSLTYIPMMSALFLSKKMSHKENFS 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                  I         +A      +           +F  G   G       +     +
Sbjct: 516 -DKMMNRIQKVYQPLLEKALKIKYWLVGGTVALFAVAIFVFGRMGGEFIPQLQEGDFAFH 574

Query: 587 RPVDL-SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
             +   S +  ++E+        + FD  K  + +       +         +   +   
Sbjct: 575 CILPQGSSLNQSIETSMQASRIIKQFDEVKMVVGKTGAAEVPTDPMPPEATDMMVILKPQ 634

Query: 646 VPLSTIQNTEIVGPKISREL 665
               T +  + +  +IS +L
Sbjct: 635 KEWKTKKTYDELADEISEKL 654



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 94/243 (38%), Gaps = 9/243 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + + ++       Q         + + +   D   ++ V ++  K   E+   +    T 
Sbjct: 801  AQVANISYKLGPAQISREAGKRRIVIGFNVKDRDVESVVKDIQSKLDKEVKLPAGYYFTY 860

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +  +   ++ ++ V +S   + + ++  F  +     I T I  ++   G FAL  
Sbjct: 861  GGQFENLQAASKRLMIAVPVSLFLIFMLLYFTFNSFKQATLIFTAI-PMSAIGGVFALLL 919

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
              + F+++A    + L G +V + +V+      N        +    + +     L   +
Sbjct: 920  RDMPFSISAGIGFIALFGVAVLNGIVLIGTF--NQLEKEGETNILKRVMEGTKTRLRPVL 977

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+  A +  LPMA+    G  V    A  +  G+V A   ++F+  P+L  I++ +   
Sbjct: 978  MTATVASLGFLPMAISTGAGAEVQKPLATVVIGGLVTATFLTLFVL-PMLYIIFNTKINL 1036

Query: 831  ARI 833
             +I
Sbjct: 1037 KKI 1039



 Score = 45.1 bits (104), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + I + + +         L   + + L +   LG   +FG+  NL ++ A+    G 
Sbjct: 347 IEGALIVIFVLVIFLGNLRAGLIVASAIPLSLLFALGMMNVFGVSANLMSLGAI--DFGL 404

Query: 733 SVNDKVVVYD 742
            V+  V++ +
Sbjct: 405 IVDGAVIIVE 414


>gi|332139720|ref|YP_004425458.1| cation efflux system protein CusA [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549742|gb|AEA96460.1| cation efflux system protein CusA [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 1045

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 71/591 (12%), Positives = 160/591 (27%), Gaps = 39/591 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           +N + V+L ++I   G L+ + N    + +D  P       I                  
Sbjct: 11  SNRFFVLLATIIIVGGGLVTMKN----TPVDAIPDLSDVQVI---------IKTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTAMLSVPGAQTVRGYSFFGDSYVYIIFDDDTDLYWARSRVLEYLSQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  + +  L    T      +              +           ++       +
Sbjct: 118 APNLPENARPQLGPDATGVGWVYLY-ALVDRTGQHDISQLRSLQDWFLKFELQTVPGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP +LR      + +       N      +  +            
Sbjct: 177 VSALGGMVKQYQVKVDPEKLRAYGIPLSHIQMAIKRGNQEVGASVVELAEAEYMVRATGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           + DK +I                    + +  ++ G              P        +
Sbjct: 237 ISDKKDIE------------------TIPLGVNDNGTPLLIRDIATVDIGPQMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                    I   +   +   TI+        L+ G       +           +    
Sbjct: 279 NGEGETVGGIVVMRFGENAQKTIDGVKAKLEDLKKGLPDGVEVVTVYDRSALIERAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V    + + +  LVA  SI + +I  L ++ + G    + S+ GI +
Sbjct: 339 ASKLLEEFIVVALVCVAFLFHVRSSLVAIISIPVGIITALIVMYMQGINANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
            IG   D  I++ E + +   K     ++ +  +          +F S +   ++ V +F
Sbjct: 399 AIGAMSDGAIVMIENMHKHMEKTPLTKENRWQVVIDSAVEVGPALFFSLLIITVSFVPVF 458

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  S   AI++V  +M + +R K +             + 
Sbjct: 459 TLEAQEGRMFSPLAYTKTYAMAASAALAITLVPVLMGYFVRGKVLPEHKNPVNKFLTFLY 518

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                  +R     +  +++     +  +   G  +      G  + +   
Sbjct: 519 IPTLKTVLRFPKSTMVAALIVLAIGVWPIDKIGSEFIPPLDEGDLMYMPTT 569



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 87/264 (32%), Gaps = 18/264 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + L+ V           I  +N        V +      +   T    + +
Sbjct: 780  PVVTPQGKRIALADVADVYIEDGPPGIKSENARLNGWVYVDIDGVDIGTYVATAQQVVAE 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + +                 +   +L    +V + ++ I +L+Y+  R     A+  + T
Sbjct: 840  QLVLPAGYSINWSGQYEYMLRAKEKLTY--VVPLTLAIIVILLYLNFRNFIEVAII-MGT 896

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV-----------VYDRMRKNM 748
            L L +  ++    + G  F++      + L G +V   V+           + DR ++  
Sbjct: 897  LPLSMVGSIWLMYIEGFNFSVAVGVGFIALAGVAVEIGVIMLVYLNHEYQALMDRCKE-G 955

Query: 749  KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
                ++    + +       +   + T+      +LP+      G  V+   A PM  G+
Sbjct: 956  GTLPSAEMLTEAVLHGAGLRVRPVMMTTATIIFGLLPVLYGSGTGSEVMSRIAAPMVGGM 1015

Query: 806  VVAASSSIFIAAPILLFIYDWRAK 829
            V A   ++ I   I L     + K
Sbjct: 1016 VSAIILTLLILPAIYLIWRKQQLK 1039



 Score = 47.8 bits (111), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/127 (16%), Positives = 52/127 (40%), Gaps = 5/127 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++++ + +       F    +L AI ++ + I   L    + GI  N+ ++  +   IG 
Sbjct: 347 IVVALVCV----AFLFHVRSSLVAIISIPVGIITALIVMYMQGINANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  +V+ + M K+M+    T  +   ++  S  E      ++ +   +S +P+     
Sbjct: 403 MSDGAIVMIENMHKHMEKTPLTKENRWQVVIDSAVEVGPALFFSLLIITVSFVPVFTLEA 462

Query: 792 SVIGSFA 798
                F+
Sbjct: 463 QEGRMFS 469


>gi|332880366|ref|ZP_08448044.1| RND transporter, HAE1/HME family, permease protein [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332681811|gb|EGJ54730.1| RND transporter, HAE1/HME family, permease protein [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 1018

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 77/689 (11%), Positives = 204/689 (29%), Gaps = 41/689 (5%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +    +  IG +           +   P                   + ++V  
Sbjct: 9   RPIAVTMCLIALIAIGCIS-----FKYIPVSLMPDIDIP-------------QITVQVSY 50

Query: 63  DDFVNGFLQ-MYSDELRS---FLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  +       LRS    +          R     I + F      + I  +V   
Sbjct: 51  PGASVHEVDAEVVAPLRSQLMQVAGLKDIHSESRMDAGSIFMEFEPGSNIDLIFIEVNEK 110

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISE 178
           +    +++  + ++  +V  +  +I       ++        + S+     +  Q+G   
Sbjct: 111 IDRAMNRMPKELERPKVVKASAMDIPAFYLDLSLKNEGGG-KDGSLPKAGMKFTQLG--- 166

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
                  +  I+ +   +   + +  + GTT                 +      +    
Sbjct: 167 -----EFARNIVSKRIEQLPQTAMVDISGTTGAEIICIPDEAKLLSMGLDMETLSKAIQS 221

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
           N   +     + G++      +      + + ++  +  G     +       K  +   
Sbjct: 222 NNITLGALSVVDGLYRYNIHFDSQLLNREDIENVYINHEGRLVQLKDLCRVEEKLASRAG 281

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
             R      +  A+       +    ++ +            P     +          S
Sbjct: 282 LVRHDGKNAVTMAVIKQN--DAQMEDLQESIEGLVEDLRKEYPDISFDLTRDQTRLLTYS 339

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
               +    + A L  +VLF+ +   +  L+   +I L +I+TL    LL  +L + S++
Sbjct: 340 IDNLEQNLYVGAVLACLVLFLFMKDWRLPLLIIITIPLTLIVTLLSFHLLDISLNIISLS 399

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLF 478
           G++LG+G+ VD++I+V + + +  R+   +  +L  G +  ++ +  S +T     V L 
Sbjct: 400 GLILGVGMIVDNSIIVIDNVMQRWRQGMPLADALVKGTNEVFTPMLSSVLTTCSVFVPLI 459

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
           F     G      A+ + +++  S+F A+ ++    + + R +K          +F    
Sbjct: 460 FLSGIAGALFYDQAMGVTIALFASLFVAVLVIPVYFMVLYRKRKTCPEGEVLDRKFHFNF 519

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGL-----NYGIDFKGGIQLGVLANRPVD 590
                + ++        S+     +I  +F                    + +  N  + 
Sbjct: 520 YAPYERGIKWVLRNPVKSVTAFCLAIPAIFLIYKGLEKERLPYMEHNDALMKIDWNAGIS 579

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           +      +  +                +        + +  +  +   + +  E +  + 
Sbjct: 580 VEENDVRVGDVLKQVDGLVQTSTAMVGVQDFVLSHTEDLTTSEAVVYFQAEDGETLRQAQ 639

Query: 651 IQNTEIVGPKISRELIRKGIVGVIISAIA 679
            +    +        +  G+ G I   I 
Sbjct: 640 EKIRNYMAEHYPHGTVEFGVSGNIFDLIF 668



 Score = 96.3 bits (237), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 99/288 (34%), Gaps = 13/288 (4%)

Query: 544  RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
            R R       +         L      + +D +  +Q  V  +  VD+ +     E+   
Sbjct: 739  RLRMLVSQNEVYAINEGARSLPVIIGEHSMDSRKLLQYTVRNDEGVDIPLSYLIRETQGE 798

Query: 604  GDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISR 663
                  + +G   + V++        +     E   K         T             
Sbjct: 799  DFKRLYSGNGGDYYPVKITADDRTVESIVDFTERFVKADPRYSASFTGNYYSSRE----- 853

Query: 664  ELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTA 722
             +I + ++ + ++   +   +  +F+     L  ++ +++D+        L G   N+ +
Sbjct: 854  -MIGELVLVLSVAVALLYFILAAQFESIVQPLVILSEIVIDVFWVFLVLWLLGESLNIMS 912

Query: 723  VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
            +  ++ + G  +ND ++  D M    +L    +     I +  +  L   V TS+   ++
Sbjct: 913  MIGIVVMSGIIINDSILKVDTMN---RLRREGMPLVTAIWRGGHSRLRPIVMTSLTTILA 969

Query: 783  VLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
            +LP       G ++    ++ +  G+V     S+F    +   IY  R
Sbjct: 970  ILPFLSRGDMGSALQYPLSLTLIVGMVAGTLVSLFFIPLVYYLIYRRR 1017



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 88/239 (36%), Gaps = 10/239 (4%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           V   L S                 + +   Q  D       L    +K    +     ++
Sbjct: 272 VEEKLASRAGLVRHDGKNAVTMAVIKQNDAQMEDLQESIEGLVEDLRKEYPDISFDLTRD 331

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
              +       L +   VG +++ + + +++     W   L  I T+ L +  TL  F L
Sbjct: 332 QTRLLTYSIDNLEQNLYVGAVLACLVLFLFM---KDWRLPLLIIITIPLTLIVTLLSFHL 388

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             I  N+ +++ ++  +G  V++ ++V D +   M+ +   +   D + K  NE     +
Sbjct: 389 LDISLNIISLSGLILGVGMIVDNSIIVIDNV---MQRWRQGMPLADALVKGTNEVFTPML 445

Query: 774 YTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAA---PILLFIYDWRAK 829
            + +      +P+    G     F    A G+ +A  +S+F+A    P+   +   + K
Sbjct: 446 SSVLTTCSVFVPLIFLSGIAGALF-YDQAMGVTIALFASLFVAVLVIPVYFMVLYRKRK 503


>gi|311693001|gb|ADP95874.1| heavy metal efflux pump, CzcA family [marine bacterium HP15]
          Length = 1035

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 78/671 (11%), Positives = 177/671 (26%), Gaps = 43/671 (6%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNR----ISLGLDLRGGSHLVLEVDEDDF 65
           L +++  I +++A      +  +D FP A P        S GL                 
Sbjct: 14  LMTLVFAIAVIVAGIFSFQKLPVDAFPDATPTMVQVFTTSPGL-------------SPVD 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           +   +    +     + K      +     +++T+ F D          V   L     +
Sbjct: 61  IETLISYPVEISMYGIPKLEKVQSTSIFGLSRVTIYFEDGTDIYFARRLVNERLSEAKRQ 120

Query: 126 LNVDPKKN-LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +     +  L    +     ++ S    D+      E           Q+         L
Sbjct: 121 IPEGMGEPELGPIASGLGRILMYSLETEDKEQYSLQEIRTIQDWIVKPQLRTVPGVTGVL 180

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                + Q     D   L+    T + +       N +               G +Y+V 
Sbjct: 181 SIGGEVKQYQVNIDAQELQARNLTVSDIRGALTQNNRNVGASFI------TRGGEEYIVR 234

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
                      G   +           I     G    +      +G   A+     V +
Sbjct: 235 G---------YGWVDSGYEGIEDIQNIIVSKSEGESPIYVKDVAEVGLGPAIRRGAEVSS 285

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
                          + +  +E        L                      +    + 
Sbjct: 286 GEESVGGYVMKLIGTNTSQVLEDVNAKIDDLNKSLPEGLKIEAYYSQADLVGKAIGTVEK 345

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
                + LVL+ L++ +   +  L+   ++ L+V+     + + G +  L S+ G+ +GI
Sbjct: 346 ALLEGSVLVLVFLYLFLGNVRSTLIVVATLPLSVLFAFIAMRMSGLSANLMSLGGLAIGI 405

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIF-------DSNITALIATVVL 477
           G+ VD  +++ E I     +      S+      +   +           I   +    L
Sbjct: 406 GMMVDGAVVMIENIFRHLEERSDEKVSVLRLVGESAREVARPIVFAIGIIIIVFLPLFTL 465

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G      A T+  +++ ++  A+++V  +     +           L    L    
Sbjct: 466 QGVEGKLFSPMAYTISFALIGALLLALTLVPVLASLSFKMGGQHKEPKLVLFLNRLYKPV 525

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +       +       + F+   +   +          +G  Q+         L      
Sbjct: 526 VNTVVKVPKIVMGVAVVAFAGSLLLFPYLGSEFVPTLREGTFQIRSTLPPGASLESAIKY 585

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            + +Q     F    G    + R +            +      +  +       + E +
Sbjct: 586 GKRIQSVVDEFPEVTGTYARIGRAEVGGDPEPVN---VVATLVNLKPLDQWREDVSYEDL 642

Query: 658 GPKISRELIRK 668
             +I+  L  +
Sbjct: 643 QSRIAEALDER 653



 Score = 70.9 bits (171), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 28/238 (11%), Positives = 80/238 (33%), Gaps = 9/238 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  +++     +      +    +Q         + V ++  +   ++          
Sbjct: 798  SRVADVEMYAGPKKISRSNASRRQYVQMNVRGRDMGSVVQDLRNRIEKQVDMPPGYFVEF 857

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +     + +  + V I+   + + ++  F        I   +     T G  ALF 
Sbjct: 858  GGQFENQERAMARLAIVVPITLALIFLLLFSAFSSLRYAALIFMNV-PFAVTGGIVALFV 916

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+  ++ A    + + G +V + VV+   +    +L        + +       L   +
Sbjct: 917  TGLYLSVPAAVGFIAVFGVAVLNGVVMVSYIN---QLRDEGYEVIEAVKLGAQRRLRPVL 973

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
             T+  A + ++P+ +    G +V    A  +  G++ +   ++ +   +  +    R 
Sbjct: 974  MTASVAILGLIPLLLADGIGSNVQRPLATVVVGGLITSTLLTLVVLPSVYQWFASERR 1031



 Score = 38.5 bits (87), Expect = 4.6,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 1/110 (0%)

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
               L  + TL L +        + G+  NL ++  +   IG  V+  VV+ + + ++++
Sbjct: 365 VRSTLIVVATLPLSVLFAFIAMRMSGLSANLMSLGGLAIGIGMMVDGAVVMIENIFRHLE 424

Query: 750 LY-TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFA 798
                 +S   L+ +S  E     V+      I  LP+    G     F+
Sbjct: 425 ERSDEKVSVLRLVGESAREVARPIVFAIGIIIIVFLPLFTLQGVEGKLFS 474


>gi|217967985|ref|YP_002353491.1| protein-export membrane protein SecD [Dictyoglomus turgidum DSM
           6724]
 gi|217337084|gb|ACK42877.1| protein-export membrane protein SecD [Dictyoglomus turgidum DSM
           6724]
          Length = 399

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 74/165 (44%), Gaps = 4/165 (2%)

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
            + P + ++ +       +I AI +++++ + F++   L A   L++ +   L    L  
Sbjct: 221 TIDPTLGKDTMESAYRAGVIGAILVVLFMILVFRFL-GLVADIALLIYVVLDLAALKLLN 279

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
               L  VA ++  IG +V+   +++ RM++    Y    +    +D      L   + +
Sbjct: 280 ATLTLPGVAGIILSIGMAVDANCLIFARMKEE---YAQRKTPMASLDAGFRNALRAIIDS 336

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPIL 820
           ++   ++ L +  +G   I  FA+ ++ G+ ++  + I I   +L
Sbjct: 337 NVTTILAALILFYFGTGPIRGFAVTLSLGVALSMFTQITITRTLL 381



 Score = 65.1 bits (156), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/127 (13%), Positives = 41/127 (32%), Gaps = 21/127 (16%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE--- 59
                     +I  I + I L                       GLD+RGG  + L+   
Sbjct: 4   RPEIKTAFIVIILGIAIWILL-----------------TFPFRYGLDIRGGIRVTLQCQK 46

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSM-RQIQNKITLSFADSRFKENIADKVTLF 118
            +  +  +  ++   + +R+ + + G+   S+ ++  +KI +     +  E   + +   
Sbjct: 47  TEGVEITDDAVRRTIEVIRNRIDQLGVTEPSIYKEGSDKIVVELPGIKDPERALEIIGQT 106

Query: 119 LQGVNSK 125
                  
Sbjct: 107 ALLEFKD 113


>gi|49480812|ref|YP_039424.1| transporter; acriflavin resistance protein [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|49332368|gb|AAT63014.1| conserved transporter; possible acriflavin resistance protein
           [Bacillus thuringiensis serovar konkukian str. 97-27]
          Length = 1038

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 195/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKDALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       +      K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASSQGSQTAGAGAQMPQMNPAAMNGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|294783329|ref|ZP_06748653.1| protein-export membrane protein SecD [Fusobacterium sp. 1_1_41FAA]
 gi|294480207|gb|EFG27984.1| protein-export membrane protein SecD [Fusobacterium sp. 1_1_41FAA]
          Length = 411

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 136/369 (36%), Positives = 217/369 (58%), Gaps = 22/369 (5%)

Query: 154 QVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMS 213
           ++ + A+ + +E++ +R++ IG++ES+IQ+ G +R++++LPG Q+      L+G TA + 
Sbjct: 53  KIDNDAMNRLVEVLNRRVNGIGVAESSIQKAGDNRVIVELPGLQNAEDAINLIGKTALLE 112

Query: 214 FHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDIS 273
           F  +  + +                       +  ++G  L            +P +   
Sbjct: 113 FKIMNEDGT---------------------LGETLLTGSAL-QKAQVSYDNLGRPQISFE 150

Query: 274 FDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAA 333
               GA  F ++TR+NIG+ LA+ LDG V TAP IN  I  G   I+GN+T+E A   A 
Sbjct: 151 MTPDGAHVFAKITRENIGRQLAITLDGEVQTAPRINTEIAGGSGAITGNYTVEEATATAT 210

Query: 334 MLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFS 393
           +L AG+LPIK  +VE R VGA LG +SI +   A +  +VLI +FMIV Y   G++AD +
Sbjct: 211 LLNAGALPIKAEVVETRTVGATLGDESIAQSKNAGMVAIVLIWVFMIVFYRLPGIIADLA 270

Query: 394 IFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLD 453
           I +   +T A L+ + ATLTLP IAG +L +G+AVD+N+++ ERI+EE R   S+  S++
Sbjct: 271 IIIFGFITFACLNFIDATLTLPGIAGFILSLGMAVDANVIIFERIKEELRFGNSIRNSIE 330

Query: 454 MGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            GF + +  IFDSN+T LI T +LF FG G ++GFA+T+ L  L SMFTAI++ + +++ 
Sbjct: 331 SGFGKGFVAIFDSNLTTLIITAILFVFGTGPIKGFAVTLALGTLASMFTAITVTKVLLLT 390

Query: 514 IIRYKKMKS 522
            +     +S
Sbjct: 391 FVNVFGFRS 399



 Score =  114 bits (285), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 72/166 (43%), Gaps = 4/166 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  +  E I +     +++ + + +++ + ++    + A   +I+    T          
Sbjct: 230 GATLGDESIAQSKNAGMVAIVLIWVFMIVFYRLP-GIIADLAIIIFGFITFACLNFIDAT 288

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A  +  +G +V+  V++++R+++ ++      S R+ I+    +       +++
Sbjct: 289 LTLPGIAGFILSLGMAVDANVIIFERIKEELRF---GNSIRNSIESGFGKGFVAIFDSNL 345

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
              I    + V+G   I  FA+ +A G + +  ++I +   +LL  
Sbjct: 346 TTLIITAILFVFGTGPIKGFAVTLALGTLASMFTAITVTKVLLLTF 391



 Score = 68.2 bits (164), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 22/137 (16%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M +  ++ +L  +   I  +                    +  I LGLDL+GG ++VLE 
Sbjct: 1   MNSKLFIRLLIVIAIFIAAVY----------------YSIRKPIKLGLDLKGGVYVVLEA 44

Query: 61  -----DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADK 114
                      N  +    + L   +   G+   S+++   N++ +     +  E+  + 
Sbjct: 45  VEDKNSNVKIDNDAMNRLVEVLNRRVNGIGVAESSIQKAGDNRVIVELPGLQNAEDAINL 104

Query: 115 VTLFLQGVNSKLNVDPK 131
           +          +N D  
Sbjct: 105 IGKTALLEFKIMNEDGT 121


>gi|196040973|ref|ZP_03108270.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus NVH0597-99]
 gi|196028141|gb|EDX66751.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus NVH0597-99]
          Length = 1038

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 196/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKDALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       ++     K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASDQGSQTAGAGAQMPQMNPAAMNGIPTVTLSEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAILLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 SEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|163792948|ref|ZP_02186924.1| heavy metal efflux pump CzcA [alpha proteobacterium BAL199]
 gi|159181594|gb|EDP66106.1| heavy metal efflux pump CzcA [alpha proteobacterium BAL199]
          Length = 1037

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 77/585 (13%), Positives = 176/585 (30%), Gaps = 44/585 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE--DDFVN 67
           L+ +I  +GL+I     L    +D  P                   L+ E +    + V 
Sbjct: 14  LFVLIVALGLVIYGLISLRAMPIDVLPDLTRPM-----------VTLITEAEGLSPEEVE 62

Query: 68  GFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLN 127
             +    +   S L        +     + + L F            V   L  + + L 
Sbjct: 63  SLVTYPIEAAMSGLPGMQRVRSTSGAGLSVVYLEFDWDTDVYIDRQFVVERLGQITNSLP 122

Query: 128 VDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSH 187
                 +   ++     ++++  +         E    +IR    ++       Q +   
Sbjct: 123 PGLVPFMTPMSSVMGEIMLMAFTSDSTSAMDLRELVDWVIR---PRLLTIPGVAQVIPIG 179

Query: 188 RILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKV 247
             + Q   + +PS++  L  +   +S        +  G             N        
Sbjct: 180 GEVRQYRVKPNPSQMMSLDVSLENLSHALHQFGANTGGGFVNQHDREYVIRNVSRTRALD 239

Query: 248 EISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPV 307
           ++  + +          +    V+           +      I   +             
Sbjct: 240 DLRNLIVAERHGVSIALSQIADVEFEPRVKRGDAGYMAEPAVIVSVMKQPGADSTSLVAS 299

Query: 308 INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCA 367
           + QA+                       +     +K   +          S    +    
Sbjct: 300 VKQAMAGIS-------------------QNFPRDVKFRDIIYDQGDFITASVENVEQVLI 340

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLA 427
             + +V IVLF+ ++  +  +++  +I ++    + +LS +G T+   ++ G+ + IG  
Sbjct: 341 EASVVVTIVLFIFLMNARTTIISLTAIPISACAAILVLSFMGQTINTMTLGGLAIAIGEL 400

Query: 428 VDSNILVNERIREENRKN------QSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF-- 479
           VD  ++  E +    R+N      +     +        S I  + I  ++  + L+   
Sbjct: 401 VDDAVVGVENVFRRLRQNALLPNPRPAIRVVAEASMEVRSGILIATIIIVVVLLPLYALS 460

Query: 480 -FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G     FA    ++IL S+ TAIS+   +  F++   K+   +   + RF    +  
Sbjct: 461 GIEGRMFAPFATAYVMAILASLVTAISVTPVLCYFLLSNSKILEDEDGLVLRFLKRINRH 520

Query: 539 AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGV 583
            + +  AR   V I  L ++  + +         +       + V
Sbjct: 521 VVGWAIARTRAVAIGALSAVVLVGVTLIWIPRVFMPTMNEGSIVV 565



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/166 (16%), Positives = 61/166 (36%), Gaps = 11/166 (6%)

Query: 670 IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
           I   ++  I + I++        +L AI    +     +   +  G   N   +  +   
Sbjct: 340 IEASVVVTIVLFIFLMNARTTIISLTAI---PISACAAILVLSFMGQTINTMTLGGLAIA 396

Query: 730 IGYSVNDKVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           IG  V+D VV    V+ R+R+N  L         ++ ++  E     +  ++   + +LP
Sbjct: 397 IGELVDDAVVGVENVFRRLRQN-ALLPNPRPAIRVVAEASMEVRSGILIATIIIVVVLLP 455

Query: 786 MAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           +       G +   FA      I+ +  ++I +   +  F+     
Sbjct: 456 LYALSGIEGRMFAPFATAYVMAILASLVTAISVTPVLCYFLLSNSK 501



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 79/199 (39%), Gaps = 6/199 (3%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           E      +     DS   +RV+E ++K + E               +   E  R  +V  
Sbjct: 802 ENTRRRIVVRANADSSDMSRVVEEIRKIVAETQMPPGYFTDLDGTFRAQEEASRSIMVLA 861

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            IS   + + ++ R++       I  ++ + +   +G   + G+  ++ ++   +TL G 
Sbjct: 862 AISLAMIFVVLYSRYRHVSLTLMIMAIVPMAMIGGVGALWIVGLPLSIASLFGFVTLAGI 921

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           +  + ++       N+ L+        L+ +   E L   + T++AA ++++P+   G  
Sbjct: 922 TARNGILKISHYI-NLVLHEGETFGDKLLLRGSEERLAPVLMTTLAAGLALIPLLFGGDD 980

Query: 793 V----IGSFAIPMAFGIVV 807
                +   A+ +  G++ 
Sbjct: 981 PGKEILHPIAVVIFGGLIS 999


>gi|313676784|ref|YP_004054780.1| acriflavin resistance protein [Marivirga tractuosa DSM 4126]
 gi|312943482|gb|ADR22672.1| acriflavin resistance protein [Marivirga tractuosa DSM 4126]
          Length = 1036

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/587 (10%), Positives = 172/587 (29%), Gaps = 42/587 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    +++L+S+   +G++        +   +  P       +            +    
Sbjct: 9   KRPSLIIVLFSIFTLLGII-----GFNKLSYELMPDFNQPVVV---------IKTIYPGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
           E   V   +    ++  S L+     V       + I  +       +        ++  
Sbjct: 55  EPKEVESSVSEKIEDALSNLEGVDFLVTKSLPNASIIIANLNYGTDLDKTMQDAQRYIDN 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           +   L  D +  ++   +  ++ I+      D     + E   ++  + + QI       
Sbjct: 115 IKKDLPADVQSPVMSKVSPNDLPIMSISATSD---LSSTEFYQKMKDEYLPQIQQITGVA 171

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         ++  + + ++L+    +  ++                      +S     
Sbjct: 172 EITMLGGEEREIQIKVNQNKLKLHKLSLLQVVEAINRSGVDVPAGNLKTDQALNSVRLTG 231

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             +   +I  + L+                           +      +      +    
Sbjct: 232 KFKTLEDIENVQLDMPFP-------------------GSPVYVKDVAIVTDGTKEISSLS 272

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVE-ERNVGADLGSDS 360
                     +   +   +      T       +   +    +  +  + +    + + +
Sbjct: 273 RYNGKEGIGLLLKKQGDANAVEVSRTVRERFQTIEEQNKASNVQFIIADDSTDNTIAAVN 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  +   LV +V+ + +   +  ++   +I  +++   A++ LLG TL L ++  +
Sbjct: 333 SVVVDLILAVVLVSLVMLLFLRSFRNAIIVLVAIPTSLVTAFAVMWLLGYTLNLMTLLAM 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR---AYSTIFDSNITALIATVVL 477
            L IG+ VD   +V E I+      +    +   G      +  +I   ++   +  + L
Sbjct: 393 SLIIGILVDDATVVLENIQRHLDMGKKKREAAMDGRMEIGFSALSITLVDVVVFLPILFL 452

Query: 478 FFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK--KMKSIDINPLSRFFLIP 535
             F    ++ F++ +  S L S+    ++   +   I + +  +  +     L  F    
Sbjct: 453 QVFVADMLKQFSVVVITSTLTSLLVGFTLTPWLASRIGKKEDLQPTNFFNKFLLWFERQL 512

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
           D +   + +   W +   I F+   I L             G   + 
Sbjct: 513 DALTDWYGKLLNWVLEHKIAFTAIVILLFAMTLGIMRQGIIGKELIS 559



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 56/148 (37%), Gaps = 8/148 (5%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--R 745
             +  A+  +  +   +        L G   NL  + A+  +IG  V+D  VV + +   
Sbjct: 354 RSFRNAIIVLVAIPTSLVTAFAVMWLLGYTLNLMTLLAMSLIIGILVDDATVVLENIQRH 413

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGI 805
            +M       +    ++      L  ++   +  F+ +L + V+   ++  F++     +
Sbjct: 414 LDMGKKKREAAMDGRMEIGF-SALSITLV-DVVVFLPILFLQVFVADMLKQFSVV----V 467

Query: 806 VVAASSSIFIAAPILLFIYDWRAKNARI 833
           + +  +S+ +   +  ++     K   +
Sbjct: 468 ITSTLTSLLVGFTLTPWLASRIGKKEDL 495



 Score = 37.7 bits (85), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/79 (13%), Positives = 33/79 (41%), Gaps = 3/79 (3%)

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIG---SFAIPMAFGIVVAAS 810
               F++ +  +    L   + T+++    +LP+A+  G+        A  +  G++ +  
Sbjct: 953  GKHFKEALLIAGKGRLRPILMTTLSMVFGMLPIALASGTASEWKNGLAWVIIGGLLSSLI 1012

Query: 811  SSIFIAAPILLFIYDWRAK 829
             +IF+   +   +   + +
Sbjct: 1013 LTIFLVPMVYYLVDKLKER 1031


>gi|94313955|ref|YP_587164.1| copper and silver tricomponent efflux pump cusA [Cupriavidus
           metallidurans CH34]
 gi|93357807|gb|ABF11895.1| copper and silver tricomponent efflux pump cusA [Cupriavidus
           metallidurans CH34]
          Length = 1055

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/595 (11%), Positives = 156/595 (26%), Gaps = 49/595 (8%)

Query: 3   NNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            N +LV+L   M+   GL          + LD  P       I                 
Sbjct: 11  RNRFLVLLATIMLTAWGLWAV-----GTTPLDALPDLSDTQVI---------IRTPFPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    +  L    T                     +  +        ++    +  
Sbjct: 117 VQSRLPAAARPALGPDATGVGWVYEY-ALVDRTGKHDLSQLRVLQDWFLRFELKSLPNVS 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q      P RLR      AK+       N    G +  +           
Sbjct: 176 EVASLGGMVRQYQVVLKPDRLRAYNLPQAKVIAAIRGANQEAGGSVLELGEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                     + I     G              P        
Sbjct: 236 YLKTLDDFR------------------QIPIETSAAGVPVRLGDVATIQFGPEMRRGISD 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +   TI+      A+L+         +           + + 
Sbjct: 278 LNGEGEVTGGVIVMRSGKNALETIDAVKAKLAVLKKSLPAGVEIVTTYDRSALIHRAVNN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                A    +V +V  + + + +  LVA  S+ L V+    ++   G    + S+ GI 
Sbjct: 338 LSYKLAEEFVVVALVCLIFLFHLRSALVAIVSLPLGVLAAFLVMRYQGVNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ +++ E   +   +               +  +    +     +F S +  
Sbjct: 398 IAVGAMVDAAVVMIENAHKHLERWHADHPGRPLSGDDRWRVIGASAAEVGPALFFSLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   S+  +   ++++V  +M ++IR +         
Sbjct: 458 TLSFIPVFTLEAQEGKMFSPLAFTKTYSMAAAAGLSVTLVPVLMGYLIRGRIPAEQANPL 517

Query: 528 LSRFFLIPDCIAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQL 581
                     I  + +   R       +     +  ++   G       +G +  
Sbjct: 518 NRWLIRAYQPILTRVLAYPRATIALAVVALVATAWPIMRIGGEFMPPLDEGDLLY 572



 Score = 52.0 bits (122), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 81/284 (28%), Gaps = 15/284 (5%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                S  L                 + V       +         +   +   +   G 
Sbjct: 229 YMVRASGYLKTLDDFRQIPIETSAAGVPVRLGDVATIQFGPEMRRGISDLNGEGEVTGGV 288

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                           + ++  + K     +  ++T   + ++   ++    +     V+
Sbjct: 289 IVMRSGKNALETIDAVKAKLAVLKKSLPAGVEIVTTYDRSALIHRAVNNLSYKLAEEFVV 348

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           ++ +     +   F    AL AI +L L +          G+  N+ ++  +   +G  V
Sbjct: 349 VALVC----LIFLFHLRSALVAIVSLPLGVLAAFLVMRYQGVNANIMSLGGIAIAVGAMV 404

Query: 735 NDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  VV+ +      +                  +I  S  E      ++ +   +S +P+
Sbjct: 405 DAAVVMIENAHKHLERWHADHPGRPLSGDDRWRVIGASAAEVGPALFFSLLIITLSFIPV 464

Query: 787 AVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                     F   A    + +  AA  S+ +   ++ ++   R
Sbjct: 465 FTLEAQEGKMFSPLAFTKTYSMAAAAGLSVTLVPVLMGYLIRGR 508


>gi|300853609|ref|YP_003778593.1| putative transporter protein [Clostridium ljungdahlii DSM 13528]
 gi|300433724|gb|ADK13491.1| predicted transporter protein [Clostridium ljungdahlii DSM 13528]
          Length = 1018

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/596 (8%), Positives = 159/596 (26%), Gaps = 37/596 (6%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             +     ++++             P       +            V        +   +
Sbjct: 13  IVLFLVAIIIVSGFYCYSGISKQETPDVASPAAM---------ITTVYPGASPSDIEKLV 63

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               ++    +              + + L   +   ++     +   ++ + S L    
Sbjct: 64  TKKVEQKAEEVDGCDYVQSYSESNASIVILYLNNDADEDKSWRDLRDKIKDLKSDLPSGC 123

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
             + + T   +    ++S +  +       + + +I ++  D    +E   +     +  
Sbjct: 124 NDSEINTNLTETAGSIISISGNNYSYQQLGDYADDIKKELRD----TEGVSRIDVKGKQD 179

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
            Q+  + D +++ +   + A +       N         +   +       +     +I 
Sbjct: 180 RQVKVDIDWNKINKYQISVADVCSVLKAQNVDIPSGSLNLVTGKIKVNTPGMFSSLHDIE 239

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                              V       G     +                    A     
Sbjct: 240 NT-----------------VVGVSSSTGEMVRIKDIAKVYMDYDDDSTYKFTDNAQNAVL 282

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA 370
                +   +              ++ G+                  S S +        
Sbjct: 283 LAVYFQKNKNIIPIGNDIKKKLDTIKKGTPSDLKIDEVTFQPKDVSDSVSFFMKNLRDGI 342

Query: 371 GLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDS 430
            LV+I + + + +    +V    I +++ +T A++  LG  +   S   +++ +G+ VD 
Sbjct: 343 ILVIITVLIGMGFRN-AMVVSAVIPISICMTFAIMYALGIKVEQMSTTALIIALGILVDD 401

Query: 431 NILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG---GGAVRG 487
            I++ + I+           +   G  + +  +F S +  + A + L       G  ++ 
Sbjct: 402 AIVIGDVIQVGIDDGLPRNEAAFNGIKKLFVPVFTSTLIIVGAFLPLLSISGVVGKFLKS 461

Query: 488 FAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARF 547
               + + ++ S   A+ +  AM     R                +  + +       + 
Sbjct: 462 LPQVVIICVICSYLCALFVTPAMSSLFFRKS---KESKRQNPIRMMFENLLKYGLKHKKT 518

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQI 603
                  +F++  I +       +    K  I + V   +  D+      +  ++ 
Sbjct: 519 IIGAALAVFAVALILIKTLGMQLFPYVDKNMIYIDVSNEKVADIKSTSKLVNQIEG 574



 Score = 74.3 bits (180), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 95/219 (43%), Gaps = 7/219 (3%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            +  V +            + + +++KI  +         +    +IS+     G+ GV+I
Sbjct: 798  DRTVTIYSDVKSGYNSVNIEKELQQKIDGMSIDPVKVIYDGEKAQISKYFTSLGVAGVLI 857

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYS 733
              + + + ++I+F  +   L  + +L L +   ++G  A FG+  +LTA   +++LIG  
Sbjct: 858  -LVIIYVLLFIQFKSFVQPLVIMCSLPLSLIGVSIGLHA-FGMNLSLTAFMGIISLIGVV 915

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
            + + +++ + +          +S  D    ++++     + +S A   +++P+A  G ++
Sbjct: 916  IRNAILLIEYIN---NGREDGLSVDDACMFAVSQRFRPIILSSTATITALIPLAFSGSAL 972

Query: 794  IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
             G  ++ M  G++ A   +  +   +   +     K  +
Sbjct: 973  FGPMSVAMMCGLLTATFLTFVVVPVVYSMVNTKLEKKIK 1011



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 53/148 (35%), Gaps = 8/148 (5%)

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
           F+    + A+  +   I  T       GI+    +  A++  +G  V+D +V+ D +   
Sbjct: 355 FRNAMVVSAVIPI--SICMTFAIMYALGIKVEQMSTTALIIALGILVDDAIVIGDVI--- 409

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFG 804
                  +   +     I +       +++    + LP+    G V   + S    +   
Sbjct: 410 QVGIDDGLPRNEAAFNGIKKLFVPVFTSTLIIVGAFLPLLSISGVVGKFLKSLPQVVIIC 469

Query: 805 IVVAASSSIFIAAPILLFIYDWRAKNAR 832
           ++ +   ++F+   +    +    ++ R
Sbjct: 470 VICSYLCALFVTPAMSSLFFRKSKESKR 497


>gi|50086352|ref|YP_047862.1| RND divalent metal cation efflux transporter [Acinetobacter sp.
           ADP1]
 gi|49532328|emb|CAG70040.1| RND divalent metal cation efflux transporter [Acinetobacter sp.
           ADP1]
          Length = 1063

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 66/617 (10%), Positives = 162/617 (26%), Gaps = 67/617 (10%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  W+++       IG+            +D  P                 +++ ++++
Sbjct: 34  QNAIWVLLFMVAWIGIGIYS-----YKNLAIDAVPDI---------------TNVQVQIN 73

Query: 62  ------EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKV 115
                     V   +    +   + L          R   +++T+ F D          +
Sbjct: 74  SQANGFTATEVEQRITYPIENAMAGLPSMEQTRSISRYGLSQVTIIFKDGTDIYWARQLI 133

Query: 116 TLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV------ISHAIEQSMEIIRQ 169
              LQ   S L       +   +T              Q          A++        
Sbjct: 134 NQRLQEAKSALPASVDPQMSPISTGLGEIYQWVIKAEPQAKKPDGSSYTAMDLREIQDWI 193

Query: 170 RIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
              Q+       +               D +RL+QL  +   +       N ++      
Sbjct: 194 VRPQLQRVPGVAEINSIGGYNKTYIVSPDLNRLQQLNLSLTTLQQALTDNNENRGAGFIE 253

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
               + +     ++    +I                     +++ +              
Sbjct: 254 DNGQQLTVRVPGMLSSIQDIE--------------------NVTLETKSGLPIRVSDVAK 293

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +     +   G           I       +     +      A ++       +     
Sbjct: 294 VSIGHDLRTGGATYNGEETVLGIAMMMMGENSKTVAQALDAKVAQIQTSLPAGVVLETVY 353

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   +           A LV++VLF+ +   +  L+    I L+++ TL  ++   
Sbjct: 354 NRSTLVDRAIQTVAKNLIEGAILVIVVLFIFLGNFRAALITACVIPLSMLFTLTGMAQQH 413

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIREENR----------KNQSVFCSLDMGFSRA 459
            +  L S+  +  GI   VD  +++ E                   Q  F  + +   +A
Sbjct: 414 ISANLMSLGALDFGII--VDGAVVIVENCIRRLAEAQQLQGRLLTRQERFKEVFLAAKQA 471

Query: 460 YSTIFDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIR 516
              +       ++  + +F   G         AI + L++L +M  +I+ V A +   + 
Sbjct: 472 RRPLLFGQFIIMVVYLPIFALSGVEAKMFHPMAIAVVLALLGAMILSITFVPAAVALWVT 531

Query: 517 YKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFK 576
            +  ++     L+        +   +   R     +  +  I +               +
Sbjct: 532 GEVKETESRWMLALKRAYAALLDWAYAWRRVVLTSVVGILLITATISTRVGSEFAPQLSE 591

Query: 577 GGIQLGVLANRPVDLSV 593
           G   L ++      +  
Sbjct: 592 GDFALQLMRAPSTGIEE 608



 Score = 46.2 bits (107), Expect = 0.022,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 13/269 (4%)

Query: 572 GIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            I     + L   +  P+ +S V        +          E    + +     +S   
Sbjct: 269 SIQDIENVTLETKSGLPIRVSDVAKVSIGHDLRTGGATYNGEETVLGIAMMMMGENSKTV 328

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-W 690
            + L+    +I   +P   +  T      +    I+     +I  AI +++ ++I    +
Sbjct: 329 AQALDAKVAQIQTSLPAGVVLETVYNRSTLVDRAIQTVAKNLIEGAILVIVVLFIFLGNF 388

Query: 691 YFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD----RMRK 746
             AL     + L +  TL   A   I  NL ++ A+    G  V+  VV+ +    R+ +
Sbjct: 389 RAALITACVIPLSMLFTLTGMAQQHISANLMSLGAL--DFGIIVDGAVVIVENCIRRLAE 446

Query: 747 NMKLYTTSISFRDL---IDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIP 800
             +L    ++ ++    +  +  +     ++      +  LP+    G    +    AI 
Sbjct: 447 AQQLQGRLLTRQERFKEVFLAAKQARRPLLFGQFIIMVVYLPIFALSGVEAKMFHPMAIA 506

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           +   ++ A   SI      +        K
Sbjct: 507 VVLALLGAMILSITFVPAAVALWVTGEVK 535


>gi|90579168|ref|ZP_01234978.1| AcrB/AcrD/AcrF family protein [Vibrio angustum S14]
 gi|90440001|gb|EAS65182.1| AcrB/AcrD/AcrF family protein [Vibrio angustum S14]
          Length = 1032

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 75/629 (11%), Positives = 172/629 (27%), Gaps = 53/629 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           ++  +  +L   I  IGL         +  +  FP                     +  +
Sbjct: 9   KHPVFASVLSIAIILIGLFS-----FQKLAIQYFPDHNSPKA-------------TVTAN 50

Query: 62  EDDFVNGFLQMYSDE----LRSFLKKEGIGVFSMRQIQNKITLSFADS-RFKENI--ADK 114
            D     F+            + L+   I      Q +  + + F+D     E     +K
Sbjct: 51  IDGASADFMSRNVATHLINAATGLESVDIMTTDCTQGKCTLNVKFSDGITDVEYANLMNK 110

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQI 174
           +   ++ +         K  +   +  + S       I++    + E    I +Q   Q 
Sbjct: 111 LRSSIEAIVDFPPSMIDKPTVTDDSGDKGSASNIITFINKGTMSSQEMYDFIGQQIKPQF 170

Query: 175 GISESTIQRLGSHRI-LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
              +      G +      +    +P+R+  L    A +                     
Sbjct: 171 RHIQGVGGVYGPYGGAAKAVRVWLNPNRMMALNVKPADIVTTLSAY-------------- 216

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                +      ++     +                  +   + G     +   D     
Sbjct: 217 -----SSSFTVGQIVGEARNFQINPVTQVTSVKDVQDLVIRVDDGNIIRIKDVADVKMGE 271

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
            ++      +                +              ++          +      
Sbjct: 272 NSLTPSKLKVNGETAMSLQVLPLKSENPVDVAARVKAEITKMQQHLPDGLEMKMVYNQAD 331

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S +    T      LV +++ + +   +   +   +I + +I   A++S LG ++ 
Sbjct: 332 FIQESINQGFHTLFEAIVLVSVIVVLFLGSLRIASIPIITIPVCIIGVFAVMSFLGFSIN 391

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
           + +I  I+L IGL VD  I+V E       + ++   +   G +     +    +T    
Sbjct: 392 VLTILAIILAIGLVVDDAIVVVENCYRYIEEGETPLNAAIKGSNEIIFPVIAMTMTLAAV 451

Query: 474 TVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI-----IRYKKMKSIDI 525
            + +    G      R FA T+  S++IS   A+++   M  ++      + K   +ID 
Sbjct: 452 YLPIGLMSGMTADLFRQFAFTLAASVIISGMVALTLSPMMCAYLIKPVAQQPKWFAAIDK 511

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       ++  F R    G     L ++  + +     +    +  G I     A
Sbjct: 512 QIHKLSLGYTKQLSKWFDRKALMGGIALALIALSGVAVWSMPQVLLPTEDTGFIDGSSEA 571

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGE 614
              V       +   L       ++    
Sbjct: 572 PTGVGRRYHIKHNSELNTVMEDNKDIAAN 600



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 102/289 (35%), Gaps = 10/289 (3%)

Query: 549  GVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
                S+  +       +T+ +   ++ K      ++    V     ++   S  +   + 
Sbjct: 730  TFLGSLKAANLQADDGYTYPIRVQVNRKDLGNFDIIDKLYVASESGQNIPLSEFVSIKAV 789

Query: 609  QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
             +    K ++ +   +   ++        ++  I E VP     +       + +EL+  
Sbjct: 790  TSESSFKTYMGQNSAEITATLMPGYTAGDIRDYIDENVPELLDDSQSYAYNGVVKELMDS 849

Query: 669  ---GIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                    +++ I + + +  +F+ +   L  + T+ L I   +    +FG   N+ +  
Sbjct: 850  QDGTQTLFLMALIFIYLILAAQFESFVDPLIILLTVPLCIVGAVLTLWVFGQSLNIYSQI 909

Query: 725  AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
             +LTL+G      +++ +   +  K      +  +    S    L   + TS+   +  L
Sbjct: 910  GLLTLVGLVTKHGILLVEFANEQRK---HGKTAIEAAIHSARSRLRPILMTSLTMILGAL 966

Query: 785  PM-AVWGGSVI--GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            P+    G   +   +  + +  G+      S+F+     + +   R K+
Sbjct: 967  PLAFASGPGSLGRVNIGLVLVGGLTAGTFFSLFLVPVAYVGMSKLREKD 1015



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 83/243 (34%), Gaps = 8/243 (3%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ-TRVLEMV 638
            + V     + +  V            S    +GE    +++     ++       ++  
Sbjct: 250 VIRVDDGNIIRIKDVADVKMGENSLTPSKLKVNGETAMSLQVLPLKSENPVDVAARVKAE 309

Query: 639 KKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAI 697
             K+ + +P               +E I +G   +  + + + + +         A   I
Sbjct: 310 ITKMQQHLPDGLEMKMVYNQADFIQESINQGFHTLFEAIVLVSVIVVLFLGSLRIASIPI 369

Query: 698 TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
            T+ + I       +  G   N+  + A++  IG  V+D +VV +      +      + 
Sbjct: 370 ITIPVCIIGVFAVMSFLGFSINVLTILAIILAIGLVVDDAIVVVENC---YRYIEEGETP 426

Query: 758 RDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIF 814
            +   K  NE +   +  +M      LP+ +  G    +   FA  +A  ++++   ++ 
Sbjct: 427 LNAAIKGSNEIIFPVIAMTMTLAAVYLPIGLMSGMTADLFRQFAFTLAASVIISGMVALT 486

Query: 815 IAA 817
           ++ 
Sbjct: 487 LSP 489


>gi|329929028|ref|ZP_08282830.1| RND transporter, HAE1/HME family, permease protein [Paenibacillus
           sp. HGF5]
 gi|328937017|gb|EGG33446.1| RND transporter, HAE1/HME family, permease protein [Paenibacillus
           sp. HGF5]
          Length = 1059

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 69/631 (10%), Positives = 161/631 (25%), Gaps = 49/631 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + + L ++I   G L        +++ D     +    I  G               
Sbjct: 10  RNKFAIWLLTIIVSFGGLYGGLTMKQETIPDINVPFLSVTAIYPG------------ASP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           +  V    +     LR+ +        +  +    + + F      +N    V   +  V
Sbjct: 58  EGVVEDVTKPLETRLRN-IDGVKTVTSTSMENAANVMVEFDYGSDLDNATAAVREAINEV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D +K  +   +   + +V              E +       + ++   +    
Sbjct: 117 K--LPDDAQKPTISKFSMSSMPVVSLSIANKDN-MELDELTRITENDIVPELEDLDGVAS 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              + + + ++  + +  ++ +L  T   +              MF +   + +      
Sbjct: 174 IQVAGQFVNEVQLKFNQDKMSELGLTEDTVKGIVQGSALYAPLGMFEMEKSQKAVAVDGG 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR- 301
           +    ++  I +                  +      ++                     
Sbjct: 234 IIGIDDLKNIAIPVIPGGGGADASAGAGAPNAGAGQQQQPPGDAAGAGAGGQNGAPGMPT 293

Query: 302 -----------------------VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAG 338
                                                    +    +      A  LR  
Sbjct: 294 GIPTVKLSEIANIEVIGSSESISRTNGKESIGIQIVKANDANTVDVVNQVKDKAEELRGL 353

Query: 339 SLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNV 398
              + L I+          S           A   ++++ + +   +  +++  SI L++
Sbjct: 354 YPGMDLTIM-LDQGKPIEDSVHTMLSKALFGALFAVLIIMVFLRNIRSTIISIISIPLSL 412

Query: 399 ILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMG 455
           ++ +  L  +  TL + S+  + + IG  VD +I+V E I        +       +   
Sbjct: 413 LIAVLCLKQMDITLNMMSLGAMTVAIGRVVDDSIVVIENIYRRMSLSTEKLKGRELISAA 472

Query: 456 FSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAISIVRAMMI 512
               +  I  S I  +   + L    G        FA+TM  ++L S+  AI++V AM  
Sbjct: 473 TREMFVPIMSSTIVTIAVFLPLTLVSGMVGELFMPFALTMVFALLASLVVAITLVPAMAH 532

Query: 513 FIIRYKKMKSIDINPLSRFFLIPDCI--AIQFMRARFWGVGISILFSICSICLLFTHGLN 570
            + R     + D                           +   +L         +     
Sbjct: 533 SLFRKGLKNTHDHEEKPGAMARGYRSILKWTLNHKAITFLAAIVLLVGSLFLTKYLGVSF 592

Query: 571 YGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
                     +       V L  V       
Sbjct: 593 IPEQEDKYAMVTYSPEPGVMLGDVEDRALKA 623



 Score = 78.2 bits (190), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 93/253 (36%), Gaps = 11/253 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+ + V   ++  ++ G         +   +V +      S   +    +  +   
Sbjct: 809  TVTSPLGIEVPIKDVAKVEKGTTPDSITRIDGKMVVSVTADILSSDVGSASTNLEAEVNK 868

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
              +P         V  +I+    + G+  ++ +   +   + + F    A  AI    L 
Sbjct: 869  LELPDGVSVQFGGVTEQINETFGQLGL-AMLAAIAIVYFVLVVTFGGGLAPFAIL-FSLP 926

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                     L   G   N++A+  VL LIG  V + +V+ DR+   + +    +S R+ +
Sbjct: 927  FIVIGAIIGLLVTGETLNVSALMGVLMLIGIVVTNAIVLIDRV---IHMEREGMSTREAL 983

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAASSSIFIAA 817
             ++    L   + T++A   ++LP+         +I     I +  G++ +   ++ +  
Sbjct: 984  LEAGATRLRPILMTALATIGALLPLVFGWESSAGIISKGLGITVIGGLISSTLLTLVVVP 1043

Query: 818  PILLFIYDWRAKN 830
             +  F+  +  K 
Sbjct: 1044 IVYEFLMKFSKKR 1056



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 95/241 (39%), Gaps = 3/241 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              +N+E +   +   +    E   +  ++    ++V     ++   +++  + P   + 
Sbjct: 301 SEIANIEVIGSSESISRTNGKESIGIQIVKANDANTVDVVNQVKDKAEELRGLYPGMDLT 360

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
                G  I   +       +  +  A+LI +         + +I ++ L +   +    
Sbjct: 361 IMLDQGKPIEDSVHTMLSKALFGALFAVLIIMVFLRNIRSTIISIISIPLSLLIAVLCLK 420

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+ ++ A+   IG  V+D +VV + + + M L T  +  R+LI  +  E     
Sbjct: 421 QMDITLNMMSLGAMTVAIGRVVDDSIVVIENIYRRMSLSTEKLKGRELISAATREMFVPI 480

Query: 773 VYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+  V G  G +   FA+ M F ++ +   +I +   +   ++    K
Sbjct: 481 MSSTIVTIAVFLPLTLVSGMVGELFMPFALTMVFALLASLVVAITLVPAMAHSLFRKGLK 540

Query: 830 N 830
           N
Sbjct: 541 N 541


>gi|157363772|ref|YP_001470539.1| acriflavin resistance protein [Thermotoga lettingae TMO]
 gi|157314376|gb|ABV33475.1| acriflavin resistance protein [Thermotoga lettingae TMO]
          Length = 1005

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 68/651 (10%), Positives = 162/651 (24%), Gaps = 42/651 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +    + +L   I   G++      L       +P A                       
Sbjct: 9   KRPIAIFMLLFAIVVFGIIALQKLHLELLPQMEYPYAA--------------VFATYMGA 54

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             + V   +    +E+ + +          +   + I + +       + + ++  +L  
Sbjct: 55  SSEEVEQLVTNPLEEIIATVPGVKNFTSVSQSGLSLIIIEYNWGVDVLSASSRLERYLNI 114

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               L     K ++V      + + +   + D                 +D+I       
Sbjct: 115 SQLNLPEQV-KPIVVEFDPSLLPVFVFSTSQDPA-------------HFLDEIKRLPDVA 160

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
                 +    +    DP + R      + + +            ++ +  + D  GN Y
Sbjct: 161 SVENLSKTEKFVSIRIDPEKARTFQVDLSLIEYFL------SGNVVYPMGQVEDETGNVY 214

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +      SG+     T           +                  ++           
Sbjct: 215 SLVVDGRFSGLDELKDTIVGFRGLSYQSLMRGQLPKLLVPVKLKQIADVEIANEPKRGLV 274

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            ++  +    +     L   L          +           S   
Sbjct: 275 RVDGNEATVVSIRKRSGANTVNVVRQVKRLLDDLE------VDYVPLIDQSFYTEKSVQN 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 +      IV+ + V       +   SI +++++ + L+   G  L L ++ G+ 
Sbjct: 329 LVKNLILGLLGASIVVALFVRDFFSTTIVALSIPISLLIAVVLMYFFGINLDLITLGGLA 388

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           + +G+ VD+ I+V E I     +  +   +   G    +  IF S  T ++    L F  
Sbjct: 389 MAVGMLVDNAIVVFENIYRHKSEGSTYDIAAIDGTKEVFGAIFASTATTVVVFAPLVF-- 446

Query: 482 GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
             +          S       A  +V  ++I               L+        +   
Sbjct: 447 TESFASTLFKYFASTFALSLAASLVVAGILIPAGSRWIRARESKTFLNIRSKYQVILTKI 506

Query: 542 FMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
             R       +  L  +    +               + +   A             + +
Sbjct: 507 LERKALIIPIVFALIVLSVFYVFHRPKNFLPDFATNTLTITAKAENQSGYRKTYELTKQI 566

Query: 602 QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
           +   +S +N+ G K     +      S   T   E             +  
Sbjct: 567 EDFVLSRKNYYGIKTIYSEVGATSELSRIITESGENQATIYIWFDGTRSEY 617



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 86/220 (39%), Gaps = 6/220 (2%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                V          + +++  +V+  + ++       +       +   L    ++ ++
Sbjct: 787  NGQRVVYVDIADTRYSISQLSSLVENVLKDLQLKDVHYSLGGQKSSLDIFLNEFKVI-ML 845

Query: 675  ISAIAMLIYIWIRFKWYFALGAITTLI-LDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            ++ I + + +  +F+   +   I T + + +        +F  + NL+ +   LTL G  
Sbjct: 846  VAIILVYMLLSAQFESLLSPFVIFTTVPVSVIALALVMIVFDYDLNLSVMIGTLTLAGVV 905

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---G 790
            VN+ +V+   + + +         R +I +S +  L   + T++   I+++P+A+    G
Sbjct: 906  VNNAIVMVTFLHQKITTGNYKQ-IRCVIVESASLRLRPILMTTLTTVIALIPVAISNAEG 964

Query: 791  GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                   A  + FG+++    ++ +   I       R + 
Sbjct: 965  SEFESPIAWTIIFGLLITTMFTLLVLPAIAEIFEKRRFRP 1004



 Score = 74.0 bits (179), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/220 (11%), Positives = 76/220 (34%), Gaps = 9/220 (4%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                 V    +   +     V ++ +      V    + +      K  + L++  I+G
Sbjct: 277 DGNEATVVSIRKRSGANTVNVVRQVKRLLDDLEVDYVPLIDQSFYTEKSVQNLVKNLILG 336

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++ ++I + +++   F          ++ + +   +     FGI  +L  +  +   +G 
Sbjct: 337 LLGASIVVALFVRDFFSTT---IVALSIPISLLIAVVLMYFFGINLDLITLGGLAMAVGM 393

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
            V++ +VV++ +    +  +   ++         E  G    ++    +   P+     +
Sbjct: 394 LVDNAIVVFENI---YRHKSEGSTYDIAAIDGTKEVFGAIFASTATTVVVFAPLVFTESF 450

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             ++   FA   A  +  +   +  +      +I    +K
Sbjct: 451 ASTLFKYFASTFALSLAASLVVAGILIPAGSRWIRARESK 490


>gi|167624419|ref|YP_001674713.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
 gi|167354441|gb|ABZ77054.1| acriflavin resistance protein [Shewanella halifaxensis HAW-EB4]
          Length = 1025

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 76/679 (11%), Positives = 194/679 (28%), Gaps = 57/679 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 + +  I   GL  +         L+ FP       I           +  +   
Sbjct: 10  RPVTTTMFFVAILLFGLASS-----RLLPLEMFPGIDIPQVI---------VEVPYKGST 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E  + +        S  Q   +I L     +     + +    +  V
Sbjct: 56  PAEVERDITNVLEESLATMGGIEELRSSSSQNGAEIDLRMKWGQNVATKSLEAREKIDAV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D ++  +   +  ++ ++  + + D+ +S A +      +Q    +   E   Q
Sbjct: 116 RHLLPKDVERVFIRQFSTADMPVLNLRISSDRELSSAFDLLD---KQLKKPLERVEGVSQ 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+    +  +L     +   ++      N      +            +  
Sbjct: 173 VTLYGVEQKQIEIRINADKLSASNISVQSLNRRLQQENFVINAGVLKTDSRVYQVSPKGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  +I+ + L                        A         N+   L   LDGR 
Sbjct: 233 FRNLDDITALVL------------------------APGITLGDIANVSFSLPERLDGRH 268

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE-RNVGADLGSDSI 361
           L            ++  +     +    +    +  S    + +            S   
Sbjct: 269 LDQNYAVGLDVFKESGANLVDVSQRVMKVINEAKRDSQFEGIKLFVMEDQAYGVTSSLRD 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L  +VL++ +   K  LV   S+ + + +TLA +  LG +L + S+ G++
Sbjct: 329 LLTAGLIGALLSFVVLYLFLRDLKMTLVIVSSVPIAICMTLAAMYFLGYSLNILSMMGLL 388

Query: 422 LGIGLAVDSNILVNERIREENRKNQS------------VFCSLDMGFSRAYSTIFDSNIT 469
           L +G+ +D+ ++V E + ++ +   +               ++  G  +    +    +T
Sbjct: 389 LAVGMLIDNAVVVTESVLQQKQAQIADGSAQEAGVAKINSSAILRGVDKVSLAVLAGTLT 448

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDIN 526
             I  +   F     +  F   + ++I IS+  ++ + + ++  +   + + + K+   +
Sbjct: 449 TAIVFLPNIFGVKVELTIFLEHVAIAICISLAASLLVAKTLLPLMLSRMSFSQKKAPKKS 508

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            L   +       +   R       + +  +   + ++     +   + +  I   V   
Sbjct: 509 HLQARYQTSLNWILAHPRISGVLAMVILASTALPLSMVKQDQSDGEGNNRLYINYQVEGR 568

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             +D++          +     +                   + +      +K     I 
Sbjct: 569 HSLDVTEAMITKMETYLYANKDEFQIDSVYSYFAADRGQSTLILKEDTEVDMKALKKTIR 628

Query: 647 PLSTIQNTEIVGPKISREL 665
                            E 
Sbjct: 629 EGFPKFAIAKPQFGWGGEN 647



 Score = 75.5 bits (183), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 87/257 (33%), Gaps = 14/257 (5%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +  +  V      + +E L   D            +     +     AQ ++ +++   
Sbjct: 758  VIRIDNRVYTLDSLAKIEILPRFDTIRHYDRQTALSIGANLDELTTEEAQEKITQVMDSV 817

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
                    +++       +    +    I+ +      + I +   F+        IT++
Sbjct: 818  NFPAGYGYSLRGGFQKQDEDEAVMATNMILAI----AMIYIVMAALFESLLLPTAIITSI 873

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            +  IT         G   ++ A+  +L L+G  VN+ +V+ D++ +              
Sbjct: 874  LFSITGVFWALLFTGTPMSIMAMIGILILMGIVVNNGIVLVDQINQLSPELDELSDTISA 933

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIGSFAIPMAFGIVVAASSSIF 814
            +       L   + T     + ++P+A+       GG      AI +  G+  +  +S++
Sbjct: 934  VCY---TRLRPVLMTVGTTVLGLVPLAMGDTQLGGGGPSYSPMAIAIIGGLTFSTVTSLY 990

Query: 815  IAAPILLFIYDWRAKNA 831
            +       +Y  R ++A
Sbjct: 991  LVPLCYQALYRMRHRSA 1007



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 90/215 (41%), Gaps = 14/215 (6%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                       + E  +    E + L  +++         R+L+  G++G ++S   ++
Sbjct: 286 NLVDVSQRVMKVINEAKRDSQFEGIKLFVMEDQAYGVTSSLRDLLTAGLIGALLSF--VV 343

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +Y+++R      L  ++++ + I  TL      G   N+ ++  +L  +G  +++ VVV 
Sbjct: 344 LYLFLR-DLKMTLVIVSSVPIAICMTLAAMYFLGYSLNILSMMGLLLAVGMLIDNAVVVT 402

Query: 742 DRMRKNMKLYTTSISFRD---------LIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           + + +  +      S ++          I + +++     +  ++   I  LP  ++G  
Sbjct: 403 ESVLQQKQAQIADGSAQEAGVAKINSSAILRGVDKVSLAVLAGTLTTAIVFLP-NIFGVK 461

Query: 793 V-IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           V +  F   +A  I ++ ++S+ +A  +L  +   
Sbjct: 462 VELTIFLEHVAIAICISLAASLLVAKTLLPLMLSR 496


>gi|153950950|ref|YP_001397885.1| AcrB/AcrD/AcrF family protein [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152938396|gb|ABS43137.1| AcrB/AcrD/AcrF family protein [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 1005

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 63/542 (11%), Positives = 153/542 (28%), Gaps = 50/542 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               +++ +  +   GL+ A    +        P     ++++      G  + V     
Sbjct: 8   RPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIKITSKVN------GDLNFV----- 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
                  +    +   S +        +     +   + F   +  E  A+ V   +  +
Sbjct: 57  ----ESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAANDVRDKIGTL 112

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L   P+   + + +   IS+ L            ++   EI  +    +   E   +
Sbjct: 113 --SLPSKPEIEKISSDSGSAISLFLY-------SKDKLQLMREINDKIKPFLQRVEGVGK 163

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +  Q+  E  P+ LR+       ++      N  +       +         + 
Sbjct: 164 IEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNKQDNYIIKGYFE 223

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  E+S + +                            F     NI           +
Sbjct: 224 ATNLEELSNLRIKT------------------------GVFLSDIANISSLYEDEKQSAL 259

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                            +    I+       +L           V            S  
Sbjct: 260 YEGKEGVLLELGKITNYNTLEMIKNIKNALPILEKQIPKDISINVLYDKSLNIHKHLSQV 319

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                +   L L+++F+ +      L+A  +I  ++I T  ++ LLG  L   +   + L
Sbjct: 320 IFDMVLGIFLTLVIVFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTL 379

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLD--MGFSRAYSTIFDSNITALIATVVLFFF 480
            IG+ +D  I+V E I ++ +    +  +         +  +I    +   I    +   
Sbjct: 380 SIGIFIDDAIVVIENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSI 439

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G       I++   I+IS   ++ ++ ++    +  K+ K  +        +      +
Sbjct: 440 PGLFFNALGISVASGIVISFLVSVFLIPSVGARFLNSKESKFYEKTEAFFEKIEQKYENL 499

Query: 541 QF 542
            +
Sbjct: 500 LY 501



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 64/200 (32%), Gaps = 7/200 (3%)

Query: 623 YQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLI 682
                      +   +     +I    +I         I + L +     V+   + ++I
Sbjct: 274 TNYNTLEMIKNIKNALPILEKQIPKDISINVLYDKSLNIHKHLSQVIFDMVLGIFLTLVI 333

Query: 683 YIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
                      L A   +   I  T     L G + N     A+   IG  ++D +VV  
Sbjct: 334 VFLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI- 392

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              +N+     +          INE     +  S+      +P++      G    +  I
Sbjct: 393 ---ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSIPGLFFNALGI 449

Query: 800 PMAFGIVVAASSSIFIAAPI 819
            +A GIV++   S+F+   +
Sbjct: 450 SVASGIVISFLVSVFLIPSV 469



 Score = 63.9 bits (153), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 94/256 (36%), Gaps = 9/256 (3%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           +      D+++  S++                KN  V++     D         ++    
Sbjct: 747 ISIKNNQDVNLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQKLLLDNMD 806

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLI 701
             +    ++         +  E ++   + V ++ + + + +   ++ +   L  + T+ 
Sbjct: 807 KILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFILPLIIMITMP 866

Query: 702 LDIT-KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
           L     ++G F + G  F+L  + A++ L G    + +++ D      K     +     
Sbjct: 867 LAFGGASIGLF-ITGHNFSLFVLIAIILLFGMVGKNAILLVDVAN---KKCHEGLDSDKA 922

Query: 761 IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAA 817
           +  +    L   + T+ A   ++LP+A+    G       AI + FG++ +   ++ +  
Sbjct: 923 LLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLISSTLLTLLVVP 982

Query: 818 PILLFIYDWRAKNARI 833
            +  F +   +K  +I
Sbjct: 983 ALFKFCFKLDSKLRKI 998


>gi|213971818|ref|ZP_03399921.1| Heavy metal efflux pump CzcA [Pseudomonas syringae pv. tomato T1]
 gi|301382517|ref|ZP_07230935.1| heavy metal efflux pump CzcA [Pseudomonas syringae pv. tomato
           Max13]
 gi|302059044|ref|ZP_07250585.1| heavy metal efflux pump CzcA [Pseudomonas syringae pv. tomato K40]
 gi|213923433|gb|EEB57025.1| Heavy metal efflux pump CzcA [Pseudomonas syringae pv. tomato T1]
          Length = 1052

 Score =  121 bits (302), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 59/577 (10%), Positives = 149/577 (25%), Gaps = 50/577 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L    +   G+          + +D  P       I                  
Sbjct: 12  NRFLVLLATLFVTAWGIWSV-----QSTPIDALPDLSDVQVI---------IRTPYAGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  +
Sbjct: 58  PQIVENQVTYPLATTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTDLYWARSRVLEYLSQI 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    K  L    T                     +           ++    +  +
Sbjct: 118 QSRLPASAKPALGPDATGVGWIYQY-ALVDRSGGHDLAQLRALQDWFLKFELKTLPNVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q   + DP +L  L  T  +++      N    G +  +            
Sbjct: 177 VATVGGMVKQYQVQLDPLKLASLGITQYEVTAAIGKANQETGGAVLEMAETEFIVRASGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++   +                             G           I     +      
Sbjct: 237 LKTLND-------------------FRAIPLKLGSGGVPVTLGDVATIQLGPEMRRGITE 277

Query: 303 LTA-PVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           L         +   ++  +   TI         L+         +           +   
Sbjct: 278 LDGEGETVGGVVILRSGKNARETIAAVKTKLDELKKSLPSGVEIVTTYDRSKLIDRAVEN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  S+ + V++   ++   G    + S+ GI 
Sbjct: 338 LSHKLIEEFIVVALVCGIFLWHLRSSLVAIISLPVGVLIAFIVMRYQGINANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + IG  VD+ +++ E   ++               +  +  +    +     +F   +  
Sbjct: 398 IAIGAMVDAAVVMIENAHKKVEAWHVANPGEELNGERHWHVMTEAAAEVGPALFFCLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  +   ++++V  +M + IR +         
Sbjct: 458 TLSFIPVFTLEAQEGRLFGPLAFTKTYAMAAAAGLSVTLVPVLMGYWIRGRIPSEQQNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                 I        +R     + +++   + ++  +
Sbjct: 518 NRWLIRIYQPALDAVLRRPKITLLVALFVFVSALWPM 554



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 88/283 (31%), Gaps = 19/283 (6%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I + +       +     + +       + L  V     S     +  +N     
Sbjct: 763  LARFPINVRYPREWRDSLGALEQLPIYTPLGSQITLGTVAKVKVSDGPPMLKSENARPSG 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               + ++ +   SV       + ++   +     +         + +  L     + V  
Sbjct: 823  WVYIDVRGRDIASVVADLRRVVNEQVKLQPGMSLSYSGQFEFLERANARLK----LVVPA 878

Query: 676  SAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + + + + +++ F ++  AL  + TL   +T    F  L G   ++      + L G S 
Sbjct: 879  TLLIIFVLLYLTFARFDEALLIMATLPFALTGGAWFLYLLGFNLSVATGVGFIALAGVSA 938

Query: 735  NDKVVVY--------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               V++         +R        +T       I +   + +     T       +LP+
Sbjct: 939  EFGVIMLLYLKNAWAER---EDLGDSTERGLVAAIREGAVQRVRPKAMTVAVIIAGLLPI 995

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             +    G  V+   A PM  G+V A   S+F+       +   
Sbjct: 996  LLGSGTGSEVMSRIAAPMVGGMVTAPLLSLFVIPAAYRLMRRR 1038



 Score = 46.6 bits (108), Expect = 0.019,   Method: Composition-based stats.
 Identities = 36/226 (15%), Positives = 77/226 (34%), Gaps = 14/226 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
           G    L   +       A    L+ +KK +   V + T  +   +  +    L  K I  
Sbjct: 286 GGVVILRSGKNARETIAAVKTKLDELKKSLPSGVEIVTTYDRSKLIDRAVENLSHKLIEE 345

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
            I+ A+   I++W       +L AI +L + +          GI  N+ ++  +   IG 
Sbjct: 346 FIVVALVCGIFLW---HLRSSLVAIISLPVGVLIAFIVMRYQGINANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVL 784
            V+  VV+ +      +   +              ++ ++  E      +  +   +S +
Sbjct: 403 MVDAAVVMIENAHKKVEAWHVANPGEELNGERHWHVMTEAAAEVGPALFFCLLIITLSFI 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           P+          F   A    + +  AA  S+ +   ++ +    R
Sbjct: 463 PVFTLEAQEGRLFGPLAFTKTYAMAAAAGLSVTLVPVLMGYWIRGR 508


>gi|300693445|ref|YP_003749418.1| cation efflux system protein, heavy metal resistance [Ralstonia
           solanacearum PSI07]
 gi|299075482|emb|CBJ34775.1| Cation efflux system protein, heavy metal resistance [Ralstonia
           solanacearum PSI07]
          Length = 1061

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/527 (10%), Positives = 134/527 (25%), Gaps = 62/527 (11%)

Query: 12  SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF------ 65
            ++  +G          +  +D  P                 +++ ++++          
Sbjct: 16  VLLAVLGAAAYGAYSYTRLSIDAVPDI---------------TNVQVQINTPAPGYSPLE 60

Query: 66  VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
               +    +   + L K        R   +++T+ F +          V+  LQ    +
Sbjct: 61  TEQRITYPLETAMAGLPKLEQTRSLSRYGLSQVTVIFKEGTDIYFARQLVSERLQAAKEQ 120

Query: 126 LNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRIDQIGISES 179
           L       +   +T      + +                  +           QI     
Sbjct: 121 LPDGVSPGMGPVSTGLGEIYLWTVEADANARKPDGTAYTPADLRELQDWVIRPQIRNVPG 180

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             +         +      P RL     T A +       N +        +  +     
Sbjct: 181 VTEVNTIGGFAKEFLVATSPERLAAYRLTLADVVTALERNNANVGAGYIERKGEQYLVRA 240

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              + D  +I  + +                                   I     +   
Sbjct: 241 PGQLRDAADIGNVVIASP--------------------NGTPVRLRDVAAIESGSELRTG 280

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                   +           +     +        +R                     + 
Sbjct: 281 AATSNGREVVLGTAVLLMGENSRTVAQAVDKRMQDIRRTLPAGVRVETVYDRTVLVDKAI 340

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +  K      A LV+ VLF+ +   +  ++    I L++++T + +     +  L S+  
Sbjct: 341 ATVKKNLLEGAILVMAVLFLFLGNLRAAVLTALVIPLSMLMTFSGMVSAKVSANLMSLGA 400

Query: 420 IVLGIGLAVDSNILVNERI-----REENRKNQSVFCS-----LDMGFSRAYSTIFDSNIT 469
           +  GI   VD  +++ E         ++   + +  +     +      A   +    + 
Sbjct: 401 LDFGII--VDGAVVIVENCVRRLAHAQHALGRPLTRAERFEEVFQAAREARRPLLYGQLI 458

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIF 513
            ++  + +F      G      AIT+ L++  +M  +I+ V A +  
Sbjct: 459 IMVVYLPIFALSGVEGKMFHPMAITVVLALAAAMVLSITFVPAAVAL 505



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 54/138 (39%), Gaps = 8/138 (5%)

Query: 698  TTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISF 757
                L         AL GI  +++A    + L G +V + +V+   +R    L       
Sbjct: 913  IPFALSGGIV--ALALRGIPLSISAAVGFIALSGVAVLNGLVMLSFIR---SLREGGKPV 967

Query: 758  RDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIF 814
               + +     L   + T++ A +  +PMA+    G  V    A  +  GI+ + + ++ 
Sbjct: 968  DAAVREGALTRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTALTLL 1027

Query: 815  IAAPILLFIYDWRAKNAR 832
            +   +    Y   ++++R
Sbjct: 1028 VLPVLYRLAYRRDSRDSR 1045



 Score = 45.1 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/173 (15%), Positives = 57/173 (32%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + M +          A+     + L +  T        +  NL ++ A+    G 
Sbjct: 348 LEGAILVMAVLFLFLGNLRAAVLTALVIPLSMLMTFSGMVSAKVSANLMSLGAL--DFGI 405

Query: 733 SVNDKVVVYDRM--RKNMKLYTTSISFRDL-----IDKSINETLGRSVYTSMAAFISVLP 785
            V+  VV+ +    R     +              + ++  E     +Y  +   +  LP
Sbjct: 406 IVDGAVVIVENCVRRLAHAQHALGRPLTRAERFEEVFQAAREARRPLLYGQLIIMVVYLP 465

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    AI +   +  A   SI F+ A + L + +    K  R+
Sbjct: 466 IFALSGVEGKMFHPMAITVVLALAAAMVLSITFVPAAVALGMGERVAEKENRL 518


>gi|284045442|ref|YP_003395782.1| MMPL domain protein [Conexibacter woesei DSM 14684]
 gi|283949663|gb|ADB52407.1| MMPL domain protein [Conexibacter woesei DSM 14684]
          Length = 741

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/495 (14%), Positives = 153/495 (30%), Gaps = 50/495 (10%)

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
            +F   L     L+A  +I + ++    + ++    + +  +  ++ G+G+A+D  +LV 
Sbjct: 221 FVFASALALVPLLMAVVAIPVTLLAVWGMTAVTEVNMVVVFLVALI-GLGVAIDYALLVV 279

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
            R REE  +      ++      A   +  S  T  +  +         +R   +   L 
Sbjct: 280 MRWREERDRGVENEEAILAAAGTAGRAVLFSGTTVAVGLLAALVLPVPFLRSMGLGGLLI 339

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
            L S+  A++++  ++  I      + +     +          +   R      G +IL
Sbjct: 340 PLASVVVALTLLPVVLATIGPRADARRLRSTDRADRRWAAWARLVVRHRVAAALGGTAIL 399

Query: 556 FSICSICLLFTHGLN-------YGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
            ++C++      G          G    G  QL         L+ V   L        + 
Sbjct: 400 LALCAVATGMLLGSPEARSLGGTGDPRTGLQQLERSGVGAAPLAPV-EVLTPAGEAQRTA 458

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRK 668
                                    V+E+            T                  
Sbjct: 459 ARLADIDGVRATSAPGGSWRADGQAVVEVFTTADPNSGDGRTTVKAIRAAASDLPGTRVG 518

Query: 669 G------------------IVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGF 710
           G                  ++ +I +   +L+    R      L AI   +L +  T G 
Sbjct: 519 GSTAQTIDFVDGVYGSFPLMLALISAITFVLLARAFR-SIVLPLKAIAMNLLSVFATWGV 577

Query: 711 FAL-----------FGIEFNL-----TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             L           FG +          V     + G S++ +V +  RMR+    Y  +
Sbjct: 578 MTLVWQHGFGTDLLFGADATGSVESWAPVIVFAFIYGLSMDYEVFILARMREE---YDRT 634

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS--S 812
            S  + + + +  T       ++  F++   MA  G   +   A  +A G+V+ A    S
Sbjct: 635 GSTDEAVVRGMAGTGRLVTSAALIVFLAFASMATAGELDLQMLATGLAAGVVLDALVVRS 694

Query: 813 IFIAAPILLFIYDWR 827
           + +    + ++  W 
Sbjct: 695 LLV-PATVSWLGRWN 708


>gi|193222239|emb|CAL60743.2| Cation efflux system protein CusA [Herminiimonas arsenicoxydans]
          Length = 1050

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/576 (11%), Positives = 157/576 (27%), Gaps = 47/576 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N  W+++   +I   GL       L ++ LD  P       I                  
Sbjct: 12  NRFWVLLAALVITGWGLWS-----LNKTPLDALPDLSDTQVI---------IRAQYPGKA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D+  +     +V  ++  V
Sbjct: 58  PQIVEDQVTYPLTTALLAVPGAKTVRGYSFFGDSFVYVLFDDATDQYWARSRVLEYISQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +  L    T                 +   +           ++       +
Sbjct: 118 QSRLPQGVRAELGPDGTGVGWIFEY-ALVDRTGHNDLSQLRTLNDWFLKFELKTVPDVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +LR    + AK+       N    G +  +        +   
Sbjct: 177 VASIGGMVKQYQVILDPDKLRAFGISHAKVLDALAKANQESGGSVVEMAETEYMVRSHGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                     V ++ ++ G              P        +
Sbjct: 237 LRSLEDFRN------------------VLLNANDAGTPVLLRDVATVRIGPEMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI+      A L++        +           + +  
Sbjct: 279 NGEGEVAGGVVVMRSGKNALETIKAVKTKLATLQSSLPKGVEVVTTYDRSKLITSAVTNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        +V +V  + + + +  LVA  S+ L V+    ++   G    L S+ GI +
Sbjct: 339 RDKLIEEFVVVALVCAIFLFHLRSALVAIISLPLGVLAAFIVMRYQGVNANLMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREE-----NRKNQSVFCSLDMGFSRAYSTIFDS---------NI 468
            +G  VD+ I++ E   +      +        + +     A S I              
Sbjct: 399 AVGAMVDAAIVMIENAHKHLEAYTHAHPNQEISASERWDLIAESAIEVGPALFFSLLIVT 458

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
            + I    L    G      A T   ++  +   AI+++  +M ++IR +          
Sbjct: 459 LSFIPVFALEAQEGKLFAPLAYTKTYTLAAAAGLAITLIPVLMGYMIRGRIPSEASNPIN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLL 564
                    +    +    W + I+ +    ++  L
Sbjct: 519 RVLIRAYRPVLNASLAHPKWTIVIAFIALALTVIPL 554



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 88/281 (31%), Gaps = 12/281 (4%)

Query: 558  ICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNF 617
               I + +       +       +       V L  + +   +     I  +N       
Sbjct: 765  RFPINVRYPQDYRNSVQTLRDFPIVTDRGAQVRLGDITNIKVADGPPMIRSENARLSGWV 824

Query: 618  LVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA 677
             V ++     +  +   + + K+                   + + +L  + ++ + +  
Sbjct: 825  YVDVRGTDLHTAVKAMQVAVAKEVKLPPGYAIGWSGQFEYLERAAAKL--QTVIPLTLGV 882

Query: 678  IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDK 737
            I +L+Y+  R     AL  + T+   +     F  L G   ++      + L G +    
Sbjct: 883  ILILLYLAFR-SVSEALLLMLTVPFALIGGFWFVWLLGHAVSVATAVGFIALAGLAAEFG 941

Query: 738  VVVYDRMRKNMKLYT------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV--- 788
            VV+   +R ++          +     + I +     +     T       ++P+     
Sbjct: 942  VVMLVYLRNSLNQRLQSGLPLSKELIAEAIREGAVLRVRPKAMTVAVILGGLIPIMFGSG 1001

Query: 789  WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             G  V+   A PM  G++ A   S+F+       + + + +
Sbjct: 1002 AGSEVMQRIAAPMVGGMITAPLLSLFVIPAAWRLLQERKLR 1042



 Score = 52.8 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 54/134 (40%), Gaps = 12/134 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+++ +  +      F    AL AI +L L +          G+  NL ++  +   +G 
Sbjct: 347 VVVALVCAI----FLFHLRSALVAIISLPLGVLAAFIVMRYQGVNANLMSLGGIAIAVGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDL--------IDKSINETLGRSVYTSMAAFISVL 784
            V+  +V+ +   K+++ YT +   +++        I +S  E      ++ +   +S +
Sbjct: 403 MVDAAIVMIENAHKHLEAYTHAHPNQEISASERWDLIAESAIEVGPALFFSLLIVTLSFI 462

Query: 785 PMAVWGGSVIGSFA 798
           P+          FA
Sbjct: 463 PVFALEAQEGKLFA 476


>gi|283834145|ref|ZP_06353886.1| cation efflux system protein CusA [Citrobacter youngae ATCC 29220]
 gi|291070295|gb|EFE08404.1| cation efflux system protein CusA [Citrobacter youngae ATCC 29220]
          Length = 1047

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVMMGALFLSVWGTWTIINT-PVDALPDLSDVQVI---------VKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       +    T                     E           ++    +  
Sbjct: 117 VQGKLPAGVSAEMGPDATGVGWIFEY-ALVDRSGKHDLAELRSLQDWFLKYELKTIPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     DP +L Q   + A +       N    G    +           
Sbjct: 176 EVASVGGVVKQYQVVVDPMKLTQYGISLADVKSALDTSNQEAGGSSVEMAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +     G   +          P        
Sbjct: 236 YLQTLDDFNN------------------IVLKTGADGVPVYLRDVARVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVISAVKAKLDTLKSSLPEGVEVVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSYKLLEEFIVVALVCALFLWHLRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENR-----------KNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E   +               N + +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWGHQHPDEKLDNATRWKVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  + F AI ++  +M F IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAAFLAIVVIPILMGFWIRGKIPAESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 I   + ++ +      + +++L  +  I  L   G  +      G  L + +  
Sbjct: 518 NRFLIRIYHPLLLKVLHWPKTTLLVAVLSILTVIYPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +      + LQ  D              +       + +    +     ++     
Sbjct: 578 PGISAA--QAADMLQKTDKLIMTVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++ + +   G+
Sbjct: 636 WRPGMTMDKIIAELDKTVRLPGL 658



 Score = 55.5 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 96/289 (33%), Gaps = 16/289 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +        +    + +     + + L  V           +  ++     
Sbjct: 763  IARYPINLRYAQSYRDSPEALRNLPILTPMKQQITLGDVADVTVVSGPSMLKTEDARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +    +            +  + S +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVNDLKKAIAENVRLKPGTSVAFSGQFELLERASHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R ++  AL  IT++   +   + F    G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RFGEALLIITSVPFALVGGIWFLYWMGFHMSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMR---------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
              VV+   +R         +N + + T+    + +       +     T       +LP+
Sbjct: 940  FGVVMLMYLRHAIEAEPALENPQTF-TADKLDEALYHGAVLRVRPKAMTVAVIIAGLLPI 998

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                  G  V+   A PM  G++ A   S+FI       ++  R +N +
Sbjct: 999  LWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRNQK 1047


>gi|171320507|ref|ZP_02909535.1| acriflavin resistance protein [Burkholderia ambifaria MEX-5]
 gi|171094248|gb|EDT39327.1| acriflavin resistance protein [Burkholderia ambifaria MEX-5]
          Length = 1072

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/515 (13%), Positives = 147/515 (28%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I   G L AL     ++  D FP       IS+  +  G       +  
Sbjct: 11  RPYTFIVLALLILIAGPLAAL-----RTPTDIFPDIRIP-VISVVWNYAG-------LQP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D     +  Y   L + +           +    + + F  S        +VT   Q V
Sbjct: 58  ADMAGRIVTYYERTLGTTVNDVAHIESQSFRSFGIVKIFFQPSVDIRTATAQVTSISQTV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++      + ++      D +     +           Q+        
Sbjct: 118 LKQMPPGTTPPQILNYNASTVPVLQLALTSDTLNEQ--QLGDYATNVIRPQLLSVAGVAI 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + Q+  + DP  L+    +   ++      N         +     +      
Sbjct: 176 PSPYGGKVRQVQIDLDPQALQAKGLSAQDVATALAQQNQIIPAGTQKIGRFEYNIRLNDS 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +++                     +    +     F     ++        +   
Sbjct: 236 PLTVDQLNA--------------------LPIRTVNGAVIFMRDVAHVRDGFPPQGNIVR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                S    I         ++A   P    +V         G+ S  
Sbjct: 276 VDGRRAVLMSVLKSGSASTLDIIAGVKAQLPRIQATLPPSLRLVVMGDQSVFVKGAVSGV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A L   ++ + +   +  L+   SI L V+  +A L+  G TL + ++ G+ L
Sbjct: 336 AREGLIAAALTSAMILLFLGSWRSTLIIAASIPLAVLAAIAALAAAGETLNVMTLGGLAL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E +     + + V  ++  G S+  +  F S +   I  V +    G
Sbjct: 396 AVGILVDDATVTIENVNWHLEQGKDVRSAILDGASQIVAPAFVSLLCICIVFVPMLLLDG 455

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                    A  +  +++ S   + + V  M  ++
Sbjct: 456 VARFLFVPMAEAVIFAMIASFVLSRTFVPMMARYL 490



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 55/153 (35%), Gaps = 7/153 (4%)

Query: 680  MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + I + F  W  A   ++ L   +   +    +     ++ A+   +  +G +  + +
Sbjct: 906  IYLLIVVNFHSWRDAFVIVSALPAALAGIVWMLFVTRTPLSVPALTGAILCMGVATANSI 965

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            +V    R+ +     +        ++        + T++A  I + PMA+    GG    
Sbjct: 966  LVVTFARERLA---HTADATVAALEAGFTRFRPVMMTALAMIIGMAPMALGLGDGGEQNA 1022

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +  G++ A  +++     +   ++    
Sbjct: 1023 PLGRAVIGGLLCATVATLVFVPVVFSLVHRRDR 1055



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 74/199 (37%), Gaps = 7/199 (3%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              L  ++  +   + L  + +  +        + R+G++   +++  +L+++     W 
Sbjct: 302 KAQLPRIQATLPPSLRLVVMGDQSVFVKGAVSGVAREGLIAAALTSAMILLFLG---SWR 358

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L    ++ L +   +   A  G   N+  +  +   +G  V+D  V  + +       
Sbjct: 359 STLIIAASIPLAVLAAIAALAAAGETLNVMTLGGLALAVGILVDDATVTIENVN---WHL 415

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
                 R  I    ++ +  +  + +   I  +PM +  G     F +PMA  ++ A  +
Sbjct: 416 EQGKDVRSAILDGASQIVAPAFVSLLCICIVFVPMLLLDGVARFLF-VPMAEAVIFAMIA 474

Query: 812 SIFIAAPILLFIYDWRAKN 830
           S  ++   +  +  +  + 
Sbjct: 475 SFVLSRTFVPMMARYLLRP 493


>gi|310644349|ref|YP_003949108.1| rnd transporter, hydrophobe/amphiphile efflux-1 (hae1) and heavy
           metal efflux (hme) families, permease protein
           [Paenibacillus polymyxa SC2]
 gi|309249300|gb|ADO58867.1| RND transporter, Hydrophobe/Amphiphile Efflux-1 (HAE1) and Heavy
           Metal Efflux (HME) families, permease protein
           [Paenibacillus polymyxa SC2]
          Length = 1038

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 55/544 (10%), Positives = 142/544 (26%), Gaps = 42/544 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +     ++ + M+  +G          Q      P    +N              V    
Sbjct: 7   KKRKITLLFFVMLIVVGTF-----GFFQLPQQEMPDVTIQNAT---------VTTVYPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +    ++    ++       +     + I +   +    + + D +   +Q 
Sbjct: 53  SPQKVEQTVTKELEKRIKEVEGVKTINSTSGNGFSSILIESKNGVDPQTVWDNMRKKVQD 112

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L    +  ++                +    S  + +  ++     DQ+       
Sbjct: 113 AQADLPQGAEVPVINDKLTSSFIGSY---ALTADSSAPLYKLNDLTTTWKDQLNTISGVS 169

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               +     ++    D  +L+Q   +  +++       +               +G  Y
Sbjct: 170 SVKFNGLPDQEVRIHIDNQKLQQYQLSWGQVAQAIQSQIDRVPTGNIEY------NGRTY 223

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  +       LN                I          +                  
Sbjct: 224 QLVVRETEKADELNQ--------------VILTRTKEGNPVYLRDIGTTELAHPEAEYFA 269

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +                  L                          
Sbjct: 270 YVEGKPAITLSIGAETGTDIPSMSAKVNSKLKELEKTLPAGVHLQTLFAQKDQVSHIFDD 329

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K    +    V++V  + +       VA  +I ++V + +  L + G TL   S+ G++
Sbjct: 330 LKRETILAIAAVILVCMLGLNLLTSAFVAL-AIPISVSIAVIFLPMFGITLNQISVVGLI 388

Query: 422 LGIGLAVDSNILVNERIREENRK-NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           + +G+ VD  ++VN+ I     +  +    +   G      +I  + +  + A   L F 
Sbjct: 389 IVLGILVDDAVVVNDNIERRLTELGEPPSVAAIKGTKEVMLSILIATLATISAFAPLLFL 448

Query: 481 GGG---AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G     +R     + L++L SM  +++I+     +  + ++             L    
Sbjct: 449 PGNVGAFIRPIPTIVSLAMLASMIMSLTIIPIFREWYEKRRQTLHPQRKSKPVGLLGQQI 508

Query: 538 IAIQ 541
            ++ 
Sbjct: 509 HSLN 512



 Score = 81.3 bits (198), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 37/245 (15%), Positives = 84/245 (34%), Gaps = 6/245 (2%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
            PV L  + +   +    +            L        D  + +  +    K++ + +
Sbjct: 248 NPVYLRDIGTTELAHPEAEYFAYVEGKPAITLSIGAETGTDIPSMSAKVNSKLKELEKTL 307

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
           P      T          +        I++  A+++   +      +      + + ++ 
Sbjct: 308 PAGVHLQTLFAQKDQVSHIFDDLKRETILAIAAVILVCMLGLNLLTSAFVALAIPISVSI 367

Query: 707 TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSIN 766
            + F  +FGI  N  +V  ++ ++G  V+D VVV D +    +L            K   
Sbjct: 368 AVIFLPMFGITLNQISVVGLIIVLGILVDDAVVVNDNI--ERRLTELGEPPSVAAIKGTK 425

Query: 767 ETLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           E +   +  ++A   +  P+    G+V   I      ++  ++ +   S+ I  PI    
Sbjct: 426 EVMLSILIATLATISAFAPLLFLPGNVGAFIRPIPTIVSLAMLASMIMSLTII-PIFREW 484

Query: 824 YDWRA 828
           Y+ R 
Sbjct: 485 YEKRR 489



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/328 (10%), Positives = 110/328 (33%), Gaps = 5/328 (1%)

Query: 501  FTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICS 560
               +     ++  I   +    +++N  +    +     +               F   +
Sbjct: 696  IATVEGTTGIVDDIGIERYALELEVNKQAMDQYLVSYTDLTRTLLLLKEGAQVSQFDTGN 755

Query: 561  ICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVR 620
              +     LN+  +    +   +         +  + L  ++      Q         + 
Sbjct: 756  SLVDIKMYLNHSNEEPSKLFQQLSVVNAAGKQIPLNQLVQIKPSFAIQQIKHYNMERTIT 815

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            ++       A   ++++  K      P              S      G + +++  + +
Sbjct: 816  VEADLNGRTASEAMVDVEGKLAQMRFPEGYKWEVGGETSDQSTIFGDLGKLAIVVVLLIL 875

Query: 681  LIYIWIRFKWYFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
            L+     +     +  +TT+ +      +G F L G+     ++  ++ L G  V + +V
Sbjct: 876  LLITMQFYSLSIPIIIMTTVYLAAAGGIIGIF-LTGMPIGFMSIMGIIALAGIVVRNGIV 934

Query: 740  VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI 799
            + + +          +  R+ + ++        + TS+AA + ++P+A+ G  +    A 
Sbjct: 935  LIEFIEDARHE---GVELREAVIQAAAARFRPILLTSLAAIVGMIPLALLGSLLFKPLAF 991

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWR 827
             + FG++ +   ++F+   + + +  ++
Sbjct: 992  TVIFGLLFSTLLTLFVVPSLYMIMAKYK 1019


>gi|225867418|ref|YP_002752796.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus 03BB102]
 gi|225789621|gb|ACO29838.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus 03BB102]
          Length = 1038

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 195/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSYQNASSIQVEYDFDKNMEKAETEIKDALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       +      K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASGQGSQTAGAGAQMPQMNPAAMNGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASATVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  IDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|261409707|ref|YP_003245948.1| acriflavin resistance protein [Paenibacillus sp. Y412MC10]
 gi|261286170|gb|ACX68141.1| acriflavin resistance protein [Paenibacillus sp. Y412MC10]
          Length = 1067

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 72/639 (11%), Positives = 168/639 (26%), Gaps = 57/639 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N + + L ++I   G L        +++ D     +    I  G               
Sbjct: 10  RNKFAIWLLTIIVSFGGLYGGLTMKQETIPDINVPFLSVTAIYPG------------ASP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
           +  V    +     LR+ +        +  +    + + F      +N    V   +  V
Sbjct: 58  EGVVEDVTKPLETRLRN-IDGVKTVTSTSMENAANVMVEFDYGSDLDNATAAVREAINEV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D +K  +   +   + +V              E +       + ++   +    
Sbjct: 117 K--LPDDAQKPTISKFSMSSMPVVSLSIANKDN-MELDELTRITENDIVPELEDLDGVAS 173

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              + + + ++  + +  ++ +L  T   +              MF +   + +      
Sbjct: 174 IQVAGQFVNEVQLKFNQDKMSELGLTEDTVKGIVQGSALYAPLGMFEMEKSQKAVAVDGG 233

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++  I +                  +      ++          + +     G  
Sbjct: 234 IIGIDDLKNIAIPVIPGGGGADASAGAGAPNAGAGQQQQPPGDAAGTGQQTVPGAGAGGQ 293

Query: 303 LTAPVI--------------------------------NQAIPSGKAQISGNFTIETAGI 330
            +AP +                                           +    +     
Sbjct: 294 NSAPGMPAGIPTVKLSEIAKIEVIGSSESISRTNGKESIGIQIVKANDANTVDVVNQVKD 353

Query: 331 LAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVA 390
            A  LR     + L I+          S           A   ++++ + +   +  +++
Sbjct: 354 KAEELRGLYPGMDLTIM-LDQGKPIEDSVHTMLSKALFGALFAVLIIMVFLRNIRSTIIS 412

Query: 391 DFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN---RKNQS 447
             SI L++++ +  L  +  TL + S+  + + IG  VD +I+V E I        +   
Sbjct: 413 IISIPLSLLIAVLCLKQMDITLNMMSLGAMTVAIGRVVDDSIVVIENIYRRMSLSTEKLK 472

Query: 448 VFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGG---AVRGFAITMGLSILISMFTAI 504
               +       +  I  S I  +   + L    G        FA+TM  ++L S+  AI
Sbjct: 473 GRELISAATREMFVPIMSSTIVTIAVFLPLTLVSGMVGELFMPFALTMVFALLASLVVAI 532

Query: 505 SIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI--AIQFMRARFWGVGISILFSICSIC 562
           ++V AM   + R     + D                           +   +L       
Sbjct: 533 TLVPAMAHSLFRKGLKNTHDHEEKPGAMARGYRSILKWTLNHKAITFLAAIVLLVGSLFL 592

Query: 563 LLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESL 601
             +               +       V L  V       
Sbjct: 593 TKYLGVSFIPEQEDKYAMVTYSPEPGVMLEDVEDRALKA 631



 Score = 79.0 bits (192), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 93/253 (36%), Gaps = 11/253 (4%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+ + V   ++  ++ G         +   +V +      S   +    +  +   
Sbjct: 817  TVTSPLGIEVPIKDVAKVEKGTTPDSITRIDGKMVVSVTADILSSDVGSASTNLEAEVNK 876

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILD 703
              +P         V  +I+    + G+  ++ +   +   + + F    A  AI    L 
Sbjct: 877  LELPDGVSVQFGGVTEQINETFGQLGL-AMLAAIAIVYFVLVVTFGGGLAPFAIL-FSLP 934

Query: 704  ITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
                     L   G   N++A+  VL LIG  V + +V+ DR+   + +    +S R+ +
Sbjct: 935  FIVIGAIIGLLVTGETLNVSALMGVLMLIGIVVTNAIVLIDRV---IHMEREGMSTREAL 991

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAV---WGGSVI-GSFAIPMAFGIVVAASSSIFIAA 817
             ++    L   + T++A   ++LP+         +I     I +  G++ +   ++ +  
Sbjct: 992  LEAGATRLRPILMTALATIGALLPLVFGWESSAGIISKGLGITVIGGLISSTLLTLVVVP 1051

Query: 818  PILLFIYDWRAKN 830
             +  F+  +  K 
Sbjct: 1052 IVYEFLMKFSKKR 1064



 Score = 72.8 bits (176), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/241 (16%), Positives = 94/241 (39%), Gaps = 3/241 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              + +E +   +   +    E   +  ++    ++V     ++   +++  + P   + 
Sbjct: 309 SEIAKIEVIGSSESISRTNGKESIGIQIVKANDANTVDVVNQVKDKAEELRGLYPGMDLT 368

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
                G  I   +       +  +  A+LI +         + +I ++ L +   +    
Sbjct: 369 IMLDQGKPIEDSVHTMLSKALFGALFAVLIIMVFLRNIRSTIISIISIPLSLLIAVLCLK 428

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+ ++ A+   IG  V+D +VV + + + M L T  +  R+LI  +  E     
Sbjct: 429 QMDITLNMMSLGAMTVAIGRVVDDSIVVIENIYRRMSLSTEKLKGRELISAATREMFVPI 488

Query: 773 VYTSMAAFISVLPM-AVWG--GSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+  V G  G +   FA+ M F ++ +   +I +   +   ++    K
Sbjct: 489 MSSTIVTIAVFLPLTLVSGMVGELFMPFALTMVFALLASLVVAITLVPAMAHSLFRKGLK 548

Query: 830 N 830
           N
Sbjct: 549 N 549


>gi|145596161|ref|YP_001160458.1| acriflavin resistance protein [Salinispora tropica CNB-440]
 gi|145305498|gb|ABP56080.1| acriflavin resistance protein [Salinispora tropica CNB-440]
          Length = 1104

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/515 (11%), Positives = 142/515 (27%), Gaps = 44/515 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   + ++  +    G                FP+A                        
Sbjct: 11  NRGLIALVAVVTTLFGAFAVPSLKQQLLPSLEFPAAFIVA--------------TYPGAG 56

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   + +  +     +        + R+    I + +      +   +++   L  V
Sbjct: 57  PEAVESQVAVPIENSLQGVTGLEKITSTSREGLATIQVEYEFGTDVDEAVNQLETALNRV 116

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       ++   T+   ++VL+ +      +   +    ++     ++   E    
Sbjct: 117 V-ELPEGVDPQVIAGGTDDLPAVVLAASGGADQQALGEQLRGTVL----PELTAIEGVRT 171

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
              +      +    D ++L       +           +                    
Sbjct: 172 VDLTGTRDEVVVITPDVAKLTTAGIQPSAFGRALQSNGVAIPAG---------------- 215

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                 + G             T   +  +      A          + + L  V     
Sbjct: 216 ----AVVDGQQTLPVQVGTPLSTLDELRGVILTVAPAAPVRLGDVATVEERLTPVTAITR 271

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                      +     +     +      A LR          V          S    
Sbjct: 272 TNGQDSLGIAVTAAPDGNAVEISQEIRERLAELRT--ASGAELTVVFDQAPFVEKSIKGL 329

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I   +  +V+ + +L  +  +V   SI L+V++ L  L +   +L L ++  + +
Sbjct: 330 ATKGLIGLVMAALVILVFLLSVRSTVVTAVSIPLSVLVALIALWIGDYSLNLLTLGALTI 389

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG- 481
            +G  VD +I+V E I+      +S   ++          +  S +T +     +   G 
Sbjct: 390 AVGRVVDDSIVVLENIKRHLEYGESKQDAIRTAVREVAGAVTASTLTTVAVFAPIALVGG 449

Query: 482 --GGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
             G     FAIT+ +++L S+  +++++  +  + 
Sbjct: 450 FVGQLFTPFAITVTVALLASLLVSLTLIPVLAYWF 484



 Score = 70.1 bits (169), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/209 (14%), Positives = 74/209 (35%), Gaps = 6/209 (2%)

Query: 596 SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
           + +E       +    +G+ +  + +   P  +  +       +         + +    
Sbjct: 257 ATVEERLTPVTAITRTNGQDSLGIAVTAAPDGNAVEISQEIRERLAELRTASGAELTVVF 316

Query: 656 IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
              P + + +      G+I   +A L+ +         +    ++ L +   L    +  
Sbjct: 317 DQAPFVEKSIKGLATKGLIGLVMAALVILVFLLSVRSTVVTAVSIPLSVLVALIALWIGD 376

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
              NL  + A+   +G  V+D +VV + ++   +      S +D I  ++ E  G    +
Sbjct: 377 YSLNLLTLGALTIAVGRVVDDSIVVLENIK---RHLEYGESKQDAIRTAVREVAGAVTAS 433

Query: 776 SMAAFISVLPMAVWG---GSVIGSFAIPM 801
           ++       P+A+ G   G +   FAI +
Sbjct: 434 TLTTVAVFAPIALVGGFVGQLFTPFAITV 462



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 33/184 (17%), Positives = 71/184 (38%), Gaps = 8/184 (4%)

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISREL 665
                 DGE++  V       D  A ++ L+     I        I        +   +L
Sbjct: 787 QQITRIDGERSVSVTGTATGSDLGATSQELQERLDAIDVPGATFVIGGVSADQDEAFADL 846

Query: 666 IRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVA 724
                + V+ +   + + + + F+    AL  + ++    T  +G   + G    + A+ 
Sbjct: 847 ----GLAVLAAIAIVFLIMVVTFRSLTQALILLVSVPFAATGAVGLLLVTGTPLGVPALI 902

Query: 725 AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            VL L+G  V + +V+ D + +        +  R+ + +     L   + T++A   ++L
Sbjct: 903 GVLMLVGIVVTNAIVLLDLVNQYRAQ---GLGVREAVVEGGRRRLRPILMTAVATIFALL 959

Query: 785 PMAV 788
           PMA+
Sbjct: 960 PMAL 963


>gi|84515859|ref|ZP_01003220.1| AcrB/AcrD/AcrF family protein [Loktanella vestfoldensis SKA53]
 gi|84510301|gb|EAQ06757.1| AcrB/AcrD/AcrF family protein [Loktanella vestfoldensis SKA53]
          Length = 1039

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 80/673 (11%), Positives = 177/673 (26%), Gaps = 49/673 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM-PKNRISLGLDLRGGSHLVLEVD 61
               + ++++ +  +G              +  P    P   +S  LD          + 
Sbjct: 11  RGKVVTLVFAFLLLVGGFA-----YLAIPKESNPEVTIPVVYVSTSLD---------GIS 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             D     L    +   + L           +    + L F          D V      
Sbjct: 57  PQDA-EDVLVRPMETEFASLTGLSTMTAKAGEGFATVQLEFEPGYDAGQALDDVRQAADR 115

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
             + L        +         I+    +              I     D+I      +
Sbjct: 116 AENDLPDSVN-LTVTEINTALFPILTVILSGPVPERTL----NAIADNLQDEIEALGGVL 170

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +   + +    L    DP+       +  ++       N             R       
Sbjct: 171 EVDVAGKRDELLEVLIDPTVFETYNLSFDELIGSITRNNQLIAAGAIESEAGRIVLKVPG 230

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+E                      + V+D+     G           I +     L   
Sbjct: 231 LIE--------------------NVQDVMDLPIITRGQTVVTFADVATIRRTFEDPLGYA 270

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
            +            +A  +   T++    +   +RA                      S 
Sbjct: 271 RIDGQPALALEIKKRAGANIIDTVDDVRSVIDRVRADWPETVEISYTLDESETVKTMLSD 330

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            +        LV+IV+   +      ++   +I    +  +A L  +G T+ +  +  ++
Sbjct: 331 LEANVIAAIMLVMIVVVYALGLRSS-VLVGLAIPGAFLTGVAALYFMGLTMNIVVLFSLI 389

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFG 481
           L +G+ VD  I+  E       +  S   +      R    I  S  T L     L F+ 
Sbjct: 390 LVVGMLVDGAIVTVELADRYLHEGDSPRLAYARAAKRMAWPIIASTATTLCVFFPLLFWT 449

Query: 482 ---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCI 538
              G  ++   IT+ +++  S+F A+  +  +   I + +   +     L          
Sbjct: 450 GVVGEFMKFLPITVIVTLSASLFMALIFIPVVGGMIGKRQGQTAKAKAQLYAAEKGDPRQ 509

Query: 539 AIQFMRARFWGVGIS----ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
              FM      +  S          ++  L    + YG    G      +      + ++
Sbjct: 510 MTGFMGGYIRVLEWSILRPWTTLSFAMIALVASFVAYGHFGNGLTFFPDVEPDYAQVEIL 569

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
             +  S+   D   +  +        +     +S A     +++     E+    T +  
Sbjct: 570 AKDNFSVYEQDALVRQVEARIAAYDEIASVYANSGASQESGDVIGSLQLELTDWDTRRPV 629

Query: 655 EIVGPKISRELIR 667
            ++   I  ++ +
Sbjct: 630 ALIAEDIRADMAQ 642



 Score = 57.4 bits (136), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 69/176 (39%), Gaps = 21/176 (11%)

Query: 672  GVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTL 729
              + +   M + +  +F  ++ A   ++ ++  +   L    + G  F +      V+ L
Sbjct: 857  AFLSAIGLMFLILLAQFNSFWQAFVVMSAIVFSVAGVLLGLMITGRPFGVVMGGIGVIAL 916

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV- 788
             G  VN+ +V+ D   +   L    +S  +   ++  + L   V TS+   + ++PM + 
Sbjct: 917  AGIVVNNNIVLIDTYNE---LRAAGLSSLEAALRTGAQRLRPVVLTSVTTALGLMPMVIG 973

Query: 789  -----------WGGSVIG---SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                       +G          +  +A G+V A   ++ +    +L + + RAK 
Sbjct: 974  LNINFFTREIVYGAPSTQWWTELSSAIAGGLVFATVLTLLVTPA-MLMLGEKRAKR 1028



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/244 (10%), Positives = 80/244 (32%), Gaps = 4/244 (1%)

Query: 573 IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
           +     + +       V  + V +   + +      +        L   +    + +   
Sbjct: 235 VQDVMDLPIITRGQTVVTFADVATIRRTFEDPLGYARIDGQPALALEIKKRAGANIIDTV 294

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             +  V  ++    P +   +  +   +  + ++      VI + + ++I +        
Sbjct: 295 DDVRSVIDRVRADWPETVEISYTLDESETVKTMLSDLEANVIAAIMLVMIVVVYALGLRS 354

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
           ++     +       +      G+  N+  + +++ ++G  V+  +V      +    Y 
Sbjct: 355 SVLVGLAIPGAFLTGVAALYFMGLTMNIVVLFSLILVVGMLVDGAIVTV----ELADRYL 410

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                  L      + +   +  S A  + V    ++   V+G F   +   ++V  S+S
Sbjct: 411 HEGDSPRLAYARAAKRMAWPIIASTATTLCVFFPLLFWTGVVGEFMKFLPITVIVTLSAS 470

Query: 813 IFIA 816
           +F+A
Sbjct: 471 LFMA 474


>gi|73537801|ref|YP_298168.1| heavy metal efflux pump CzcA [Ralstonia eutropha JMP134]
 gi|72121138|gb|AAZ63324.1| Heavy metal efflux pump CzcA [Ralstonia eutropha JMP134]
          Length = 1075

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 67/604 (11%), Positives = 157/604 (25%), Gaps = 68/604 (11%)

Query: 5   PWLVILYSM-ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            WLV+L  + I  +GL         +  +D  P                 +++ ++++ +
Sbjct: 13  RWLVLLAVLGIALLGLYS-----YSRLPIDAVPDI---------------TNVQVQINTE 52

Query: 64  DF------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +   + L          R   +++T+ F D          V  
Sbjct: 53  APGYSPLETEQRVTYPIETAMAGLPGLEQTRSLSRYGLSQVTVIFKDGTDIYFARQLVNQ 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQV------ISHAIEQSMEIIRQRI 171
            +Q    KL       L   +T      + +    D             +          
Sbjct: 113 RVQEAREKLPQGMTPQLGPISTGLGEIYLWTVEAEDSARKPDGTRYTPTDLREIQDWIIK 172

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            Q+       +         +      P R+     +   +       N++         
Sbjct: 173 PQLRTVAGVTEINTIGGFAREYLVAPSPERMASYGLSLQDVVLALEKNNSNVGAGYIE-- 230

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                 G QYLV    +++              +   + D+       +         +G
Sbjct: 231 ----RRGEQYLVRAPGQVT--------------SMDDIRDVIVGTAQGQPIRIRDLAEVG 272

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
               +           +           +         +  A +          +     
Sbjct: 273 VGRELRTGAATDNGREVVLGTVFMLIGENSRAVSRAVDVRMAEINRTLPEGVRAVTVYDR 332

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 + +  K      A LV+ VLF+++   +  ++    I L+++ T   ++    +
Sbjct: 333 TILVDKAIATVKKNLLEGAALVVAVLFLLLGNIRAAVITALVIPLSMLFTFTGMATYRIS 392

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVF----------CSLDMGFSRAYS 461
             L S+  +  GI   VD  +++ E         Q               +      A  
Sbjct: 393 ANLMSLGALDFGII--VDGAVVIVENCVRRLAHGQQHHGRPLTRSERLHEVFAAAREARR 450

Query: 462 TIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
            +    +  +I  V +       G      AIT+ L++  +M  +++ V A +   I  +
Sbjct: 451 PLVFGQLIIMIVYVPILALSGVEGKMFHPMAITVVLALAGAMLLSVTFVPAAVALFIGDR 510

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
             +  +        L    +A             ++   +  +              +G 
Sbjct: 511 VAEKENRLMEWARKLYAPALARSVANTPVVLTFAAVAVVLSGLVSTRLGSEFIPNLNEGD 570

Query: 579 IQLG 582
           I + 
Sbjct: 571 IAVQ 574



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 81/239 (33%), Gaps = 7/239 (2%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             + +L I     Q         + +          + V E        +   +       
Sbjct: 825  EIATLDIAPGPNQVSRENGKRRIVISANVRGRDVGSFVPEAQSAIAERVTIPTGYWIAWG 884

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               +  +    +  + V ++ + + + ++  F      L   T +   +T  +    L G
Sbjct: 885  GTFEQLQSATDRLQIVVPLALLMVFVLLFAMFGNLKDGLLVFTGIPFALTGGILALWLRG 944

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            I  +++A    + L G +V + +V+   +R    L    ++  D +       L   + T
Sbjct: 945  IPLSISAAVGFIALSGVAVLNGLVMLSFIR---SLREEGLALDDAVQTGALSRLRPVLMT 1001

Query: 776  SMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            ++ A +  +PMA+    G  V    A  +  GIV + + ++ +   +    +      A
Sbjct: 1002 ALVASLGFIPMAIATGTGAEVQRPLATVVIGGIVSSTALTLLVLPVLYRLAHRRDEPMA 1060


>gi|84623108|ref|YP_450480.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84367048|dbj|BAE68206.1| acriflavin resistance protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 1018

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/552 (12%), Positives = 164/552 (29%), Gaps = 37/552 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR++   +   ++I   G++  +     +         +                +    
Sbjct: 8   MRSSRLTLFAAALILIGGIVAFVGFPSQEEPSVTVRDTL--------------VSVAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS-FADSRFKENIADKVTLFL 119
              + V   L    +     L      V ++R     + L+ + D +    +   V    
Sbjct: 54  MPSEQVENLLARPVEAQLRELAGIKRIVTTVRPGSAIVQLTAYDDVQDLPALWQHVRAKA 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L        +    +    + ++   +        E     +R+  +Q+     
Sbjct: 114 AEAGAQLPAGTLGPFV---DDDFGRVSVASIAVTAPGFSMSEMRG-PLRRMREQLYGVPG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q         ++    D +RL     TT+ +       N    G    V  L  +   
Sbjct: 170 VEQVKVFGLQDERVYVSFDRARLLASGLTTSSVMAQLRAQNVVGSGGQVAVSGLALTVAT 229

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +    ++ G+ L+   A+                 G+R         +    A    
Sbjct: 230 SGEIRTPGQLRGVLLSVPGASV---------------GGSREVTLGELAQVQVMPADPPQ 274

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +        +       S    +  A        A  LP+             +  +
Sbjct: 275 SAAVYQGQPAVVVSVSMQPGSNIADVGKALRAKLDDTARQLPVGFTQHVVSFQADVVERE 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                       ++++ + M+ L  + GL+    + L +  +L ++ +L   L   SIA 
Sbjct: 335 MGKMHHVMGETIVIVMAVVMLFLGWRTGLIVGAIVPLTIFASLIVMRVLDVELQTVSIAA 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I+L +GL VD+ I++ E I       +    +         + +  S++  ++A    FF
Sbjct: 395 IILALGLLVDNGIVIAEDIERRLVAGEERRQACIDAGRTLATPLLTSSLVIVLAFSPFFF 454

Query: 480 FGGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                    R  AI +G+++L S   +I++   + ++  +    K  +            
Sbjct: 455 GQTSTNEYLRSLAIVLGVTLLGSWLLSITVTPLLCMYFAKVHVTKRDEAESRFYRGYRRV 514

Query: 537 CIAIQFMRARFW 548
              +   +A F 
Sbjct: 515 IERVLQHKALFI 526



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/204 (13%), Positives = 72/204 (35%), Gaps = 6/204 (2%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
            +    R+   +            I        + ++ L+      +      +L+++W  
Sbjct: 820  TEIVERLSAPIAALKLPPGYRVEIGGELEDSAEANQALLHYMPHALG---AILLLFVWQF 876

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
              +      ++ +   +        L G  F   A   +L L G  VN+ V++  R+   
Sbjct: 877  NSFRKLCIVLSAVPFVLIGAALALVLTGYPFGFMATFGLLALAGIIVNNAVLLLQRIEAE 936

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +      +  R+ +  +  + L   V T +   + ++P+ ++ G +    AI M  G+ +
Sbjct: 937  LAD---GLPRREAVVAAAVKRLRPIVMTKLTCIVGLVPLMLFAGPLWTGMAITMIGGLAL 993

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
                ++ +   +   ++  R +  
Sbjct: 994  GTLVTLGLIPILYDLLFGLRMRRG 1017



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/248 (12%), Positives = 84/248 (33%), Gaps = 13/248 (5%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V       + V+ ++                  +              + ++ +  ++ 
Sbjct: 256 EVTLGELAQVQVMPADPPQSAAVYQGQPAVVVSVSMQPGSNIADVGKALRAKLDDTARQL 315

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLI 701
                        ++V  ++ +     G   ++I    +++++  R      +GAI  L 
Sbjct: 316 PVGFTQHVVSFQADVVEREMGKMHHVMGET-IVIVMAVVMLFLGWRTGLI--VGAIVPL- 371

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
             I  +L    +  +E    ++AA++  +G  V++ +V+ + +    +L       +  I
Sbjct: 372 -TIFASLIVMRVLDVELQTVSIAAIILALGLLVDNGIVIAEDI--ERRLVAGEERRQACI 428

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSV----IGSFAIPMAFGIVVAASSSIFIAA 817
           D     TL   + TS    +       +G +     + S AI +   ++ +   SI +  
Sbjct: 429 DAG--RTLATPLLTSSLVIVLAFSPFFFGQTSTNEYLRSLAIVLGVTLLGSWLLSITVTP 486

Query: 818 PILLFIYD 825
            + ++   
Sbjct: 487 LLCMYFAK 494


>gi|329961557|ref|ZP_08299638.1| hypothetical protein protein TIGR03982 [Bacteroides fluxus YIT
           12057]
 gi|328531769|gb|EGF58598.1| hypothetical protein protein TIGR03982 [Bacteroides fluxus YIT
           12057]
          Length = 1041

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 80/619 (12%), Positives = 189/619 (30%), Gaps = 34/619 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWDTDVYLARQIVSEKLAVV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L  +  K  L   +     +++     D      ++           ++  +    Q
Sbjct: 118 SESLPANVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +   + DP R+R    T  ++       N +  G       +    GN+Y+
Sbjct: 176 VAVLGGDIKEYQIQLDPERMRHYGITLDEVMNVTREMNLNANGG------VLYEYGNEYI 229

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           V     +S   +            + VV  +          ++    IG  L  +     
Sbjct: 230 VRG--VLSTDRVEQLA--------RAVVRSNGTSGAPVILEDIADVRIGAKLPKLGTASE 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +   +    A  +   T +    L  + +     +K++    R       S    
Sbjct: 280 RGKPAVLMTVTKQPATSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIGNV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +       V+IVLF+ +   +  +++  ++ L+++ +L  L  +G T+   S+ G+ +
Sbjct: 340 QKSLLEGGIFVVIVLFLFLANVRTTVISLVTLPLSLVASLLALHYMGFTINTMSLGGMAI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +  R+N+        S+   +          I +S +  +++ 
Sbjct: 400 AIGSLVDDAIVDVENVYKRLRENRLKPAEERLSILDVVFNASKEVRMPILNSTLIIVVSF 459

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LFF     G  +    I   +++  S   A+++   +  +++  +K++  +    S  
Sbjct: 460 VPLFFLSGMEGRMLVPLGIAFIVALAASTLVALTVTPVLCSYLLGKEKIRKENTTGDSIV 519

Query: 532 FLIPDCIA-----IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                              +    G   +F++  IC             +G   + + + 
Sbjct: 520 ARKMKQWYSAALTFVLGHKKSVLGGTIGIFAVALICFFTLGRSFLPPFNEGSFTINISSL 579

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   +S            R +            +E   +      
Sbjct: 580 PGISLEESDKMGHRAEELLLSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSR 639

Query: 647 PLSTIQNTEIVGPKISREL 665
                +  E +G  I   +
Sbjct: 640 SELVAEVREKLGTIIGANI 658



 Score = 70.1 bits (169), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/219 (13%), Positives = 77/219 (35%), Gaps = 11/219 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +  + ++ K    ++   + I             + +  + G I   I +
Sbjct: 295 TSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIGNVQKSLLEGGIFVVIVL 354

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++         + ++ TL L +  +L      G   N  ++  +   IG  V+D +V 
Sbjct: 355 FLFLA---NVRTTVISLVTLPLSLVASLLALHYMGFTINTMSLGGMAIAIGSLVDDAIVD 411

Query: 740 ---VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
              VY R+R+N +K     +S  D++  +  E     + +++   +S +P+    G    
Sbjct: 412 VENVYKRLRENRLKPAEERLSILDVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGR 471

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++    I     +  +   ++ +   +  ++        
Sbjct: 472 MLVPLGIAFIVALAASTLVALTVTPVLCSYLLGKEKIRK 510



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 83/217 (38%), Gaps = 11/217 (5%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N   ++      +    R +    +   +             G +   E      + +  
Sbjct: 815  NVKRKIVISANVADRDLRSVVNDIQDRVDKQIKLPEGYHVEYGGQFESEQAASRTLALTS 874

Query: 676  SAIAMLIYIWIRFKWYFAL--GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
                ++I++ +  ++  ++   AI  + L +    G FAL     E ++ A+   ++L G
Sbjct: 875  FMSIVVIFLLLYHEFR-SVKESAIILINLPLALIGGVFALLITTGEVSIPAIIGFISLFG 933

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + +++      N   +    S  D + +   + L   + T++++ ++++P+A+ G 
Sbjct: 934  IATRNGMLLISHY--NHLQHEEGYSIYDSVIRGSLDRLNPILMTALSSALALIPLALSGD 991

Query: 792  ----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
                 +    A  +  G++ +   + FI   + L ++
Sbjct: 992  LPGNEIQSPMAKVILGGLLTSTFLNGFIIPIVYLMMH 1028


>gi|170702430|ref|ZP_02893316.1| acriflavin resistance protein [Burkholderia ambifaria IOP40-10]
 gi|170132654|gb|EDT01096.1| acriflavin resistance protein [Burkholderia ambifaria IOP40-10]
          Length = 1072

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 82/592 (13%), Positives = 168/592 (28%), Gaps = 39/592 (6%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I   G L AL     ++  D FP       IS+  +  G       +  
Sbjct: 11  RPYTFIVLALLILIAGPLAAL-----RTPTDIFPDIRIP-VISVVWNYAG-------LQP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D     +  Y   L + +           +    + + F  S        +VT   Q V
Sbjct: 58  ADMAGRIVTYYERTLGTTVNDVAHIESQSFRSFGIVKIFFQPSVDIRTATAQVTSISQTV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++      + ++      D +     +           Q+        
Sbjct: 118 LKQMPPGTTPPQILNYNASTVPVLQLALTSDTLNEQ--QLGDYATNVIRPQLLSVAGVAI 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + Q+  + DP  L+    +   ++      +         +     +      
Sbjct: 176 PSPYGGKVRQVQIDLDPQALQAKGLSAQDVATALAQQSQIIPAGTQKIGRFEYNIRLNDS 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +++                     +    +     F     ++        +   
Sbjct: 236 PLTIDQLNA--------------------LPIRTVNGAVIFMRDVAHVRDGFPPQGNIVR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                S    I         + A   P    +V         G+ S  
Sbjct: 276 VDGRRAVLMSILKSGSASTLDIIAGVKAQLPRIEATLPPSLRLVVMGDQSVFVKGAVSGV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A L   ++ + +   +  L+   SI L V+  +A L+  G TL + ++ G+ L
Sbjct: 336 AREGLIAAALTSAMILLFLGSWRSTLIIAASIPLAVLAAIAALAAAGETLNVMTLGGLAL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E +     + + V  ++  G S+  +  F S +   I  V +    G
Sbjct: 396 AVGILVDDATVTIENVNWHLEQGKDVRSAILDGASQIVAPAFVSLLCICIVFVPMLLLDG 455

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
              R   + M  +++ +M  +  + R  +  + RY               L P   +   
Sbjct: 456 V-ARFLFVPMAEAVIFAMIASFVLSRTFVPMMARYLLRPH---AAHPAAVLAPRGGSFPT 511

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
            R+R   V     F      L   +    G+      +  VL    V LS V
Sbjct: 512 PRSRNPLVAFQQGFERRFAALRTGYRAVLGLALAHRARFVVLFLTAVALSFV 563



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 55/153 (35%), Gaps = 7/153 (4%)

Query: 680  MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + I + F  W  A   ++ L   +   +    +     ++ A+   +  +G +  + +
Sbjct: 906  IYLLIVVNFHSWRDAFVIVSALPAALAGIVWMLFVTRTPLSVPALTGAILCMGVATANSI 965

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            +V    R+ +     +        ++        + T++A  I + PMA+    GG    
Sbjct: 966  LVVTFARERLA---HTADATVAALEAGFTRFRPVMMTALAMIIGMAPMALGLGDGGEQNA 1022

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +  G++ A  +++     +   ++    
Sbjct: 1023 PLGRAVIGGLLCATVATLVFVPVVFSLVHRRDR 1055



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 74/199 (37%), Gaps = 7/199 (3%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              L  ++  +   + L  + +  +        + R+G++   +++  +L+++     W 
Sbjct: 302 KAQLPRIEATLPPSLRLVVMGDQSVFVKGAVSGVAREGLIAAALTSAMILLFLG---SWR 358

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L    ++ L +   +   A  G   N+  +  +   +G  V+D  V  + +       
Sbjct: 359 STLIIAASIPLAVLAAIAALAAAGETLNVMTLGGLALAVGILVDDATVTIENVN---WHL 415

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
                 R  I    ++ +  +  + +   I  +PM +  G     F +PMA  ++ A  +
Sbjct: 416 EQGKDVRSAILDGASQIVAPAFVSLLCICIVFVPMLLLDGVARFLF-VPMAEAVIFAMIA 474

Query: 812 SIFIAAPILLFIYDWRAKN 830
           S  ++   +  +  +  + 
Sbjct: 475 SFVLSRTFVPMMARYLLRP 493


>gi|146283742|ref|YP_001173895.1| cation efflux family protein [Pseudomonas stutzeri A1501]
 gi|145571947|gb|ABP81053.1| cation efflux family protein [Pseudomonas stutzeri A1501]
          Length = 1032

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/579 (9%), Positives = 139/579 (24%), Gaps = 58/579 (10%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF----VNGFLQMYSDELRSFLK 82
             +  +D  P                   + +               +    +   + L 
Sbjct: 9   YQRLPIDAVPDITN-------------VQVQINAAVPGASPLETEQRVTFPIETAMAGLP 55

Query: 83  KEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKE 142
                    R    +IT+ F D          V+  LQ  +++L    +  L   +T   
Sbjct: 56  HLRQTRSLSRSGFAQITVIFDDGTDLYFARQLVSERLQAASNELPQGVEVTLGPISTGLG 115

Query: 143 ISIVLSQNNIDQVIS------HAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGE 196
              + +     +            +           Q+       +         +    
Sbjct: 116 EIFLWTVEAEPEARRPDGQPYTPTDLREIQDWIIKPQLRNVRGVAEINTIGGFAKEYQVA 175

Query: 197 QDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNG 256
            DP R+     T  ++       N +           + S      +    +I       
Sbjct: 176 PDPKRMAAYRITLEQLVVALERNNANVGAGFIERNGEQLSIRTPGQLGSPEDIG------ 229

Query: 257 ATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGK 316
                         +I     G           +G    +           +        
Sbjct: 230 --------------NIVLSNAGGAPVRVRDIAEVGIGRELRSGAATDNGREVVLGTAFML 275

Query: 317 AQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIV 376
              +     +       ++          I           + +  +      A LV+ V
Sbjct: 276 VGENSRSVSQAVAQRLEIINQNLPEGVSAITVYDRTDLVDKAIATVRKNLIEGAILVIAV 335

Query: 377 LFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNE 436
           LF+ +   +  L+    I L+++ T   ++    +  L S+  +  GI   VD  +++ E
Sbjct: 336 LFLFLGNLRAALITAMVIPLSMLFTFTGMATNKVSANLMSLGALDFGII--VDGAVVIVE 393

Query: 437 RIREENRK----------NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGG 483
                                 F  +      A   +    +  ++  + +F      G 
Sbjct: 394 NAIRRLAHAQEKHGRILTRSERFHEVFAAAKEARRPLIYGQLIIMVVYLPIFALTGVEGK 453

Query: 484 AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFM 543
                A T+ +++L +M  +++ V A +   +  K  +  +    +        +     
Sbjct: 454 MFHPMAFTVVIALLGAMILSVTFVPAAVALFVTGKVQEKDNRLMRAARNGYAPVLDWVMR 513

Query: 544 RARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
                  G      + ++  +           +G   L 
Sbjct: 514 HRTLVFSGAVASVLLSALLAMRMGSEFVPSLSEGDFALQ 552



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 695  GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            G +    +    T G  AL+   I  +++A    + L G +V + +V+   ++    L  
Sbjct: 887  GLVVFTGIPFALTGGILALWLRDIPLSISAGVGFIALSGVAVLNGLVMIAFIK---GLLE 943

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
                  + + +     L   + T++ A +  +PMA+    G  V    A  +  GI+ + 
Sbjct: 944  EGRPLSEAVREGALVRLRPVLMTALVASLGFVPMALATGTGAEVQRPLATVVIGGILSST 1003

Query: 810  SSSIFIAAPILLFIYDWRAKNA 831
            + ++ +   +       R K  
Sbjct: 1004 ALTLLVLPALYYTALQRRMKRN 1025



 Score = 45.1 bits (104), Expect = 0.050,   Method: Composition-based stats.
 Identities = 40/232 (17%), Positives = 86/232 (37%), Gaps = 17/232 (7%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
              F++  +     S A  + LE++ + + E V   T+ +   +  K    + +  I G 
Sbjct: 270 GTAFMLVGENSRSVSQAVAQRLEIINQNLPEGVSAITVYDRTDLVDKAIATVRKNLIEGA 329

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           I+    + +++        AL     + L +  T    A   +  NL ++ A+    G  
Sbjct: 330 ILVIAVLFLFLG---NLRAALITAMVIPLSMLFTFTGMATNKVSANLMSLGAL--DFGII 384

Query: 734 VNDKVVVYDR-MR------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
           V+  VV+ +  +R      +      T       +  +  E     +Y  +   +  LP+
Sbjct: 385 VDGAVVIVENAIRRLAHAQEKHGRILTRSERFHEVFAAAKEARRPLIYGQLIIMVVYLPI 444

Query: 787 AVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
               G    +    A  +   ++ A   S+ F+ A + LF+    + K+ R+
Sbjct: 445 FALTGVEGKMFHPMAFTVVIALLGAMILSVTFVPAAVALFVTGKVQEKDNRL 496


>gi|84684682|ref|ZP_01012582.1| transporter, AcrB/AcrD/AcrF family protein [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84667017|gb|EAQ13487.1| transporter, AcrB/AcrD/AcrF family protein [Rhodobacterales
           bacterium HTCC2654]
          Length = 1272

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 66/514 (12%), Positives = 137/514 (26%), Gaps = 44/514 (8%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   ++L  +I  +   IA    LP+      P                   +       
Sbjct: 10  SRARMVLAFIILSLTAGIAAYVGLPKEGE---PDIEIPALF---------VSVPFPGISA 57

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           +     L    ++  + +        +  +    + L F     +  +   V   +    
Sbjct: 58  EDSENLLVRPMEQELADIDGLKTMTGTAAENYAGLALEFEFGWDRTKVIADVRDAMNAAE 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           +K      K  +      E  I++            +  +    R+  D++   E  ++ 
Sbjct: 118 AKFPSGADKYSVNEINFSEFPILVVNFTGAVPERMLVRLA----REVQDEVEGIEPVLEA 173

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
             +      +    DP +L     T  ++       N               S       
Sbjct: 174 QLTGARDEMMEVLIDPLKLEAYNVTAGELIQVVTNNNQLIAAGQITTPSGATSIKIPSSF 233

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +D  +I G                    +     G R         I             
Sbjct: 234 DDVQDIYG--------------------LPVKVNGDRVVTLGDLAEIRLAFEDRAGTARF 273

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPI----KLNIVEERNVGADLGSD 359
                       +   +   T+     +                                
Sbjct: 274 NGDTTVALQVVKRKGFNLIDTVAEVKEVVEAATEEWPDELKQAVEVRYSNDQSHVISSMV 333

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S  +G+      LV+IV+   +      L+  F+I  + +LT AL ++LG  +    + G
Sbjct: 334 SQLEGSVITAIALVMIVVLASLGMR-SALLVGFAIPTSFLLTFALFAVLGVAINNIVMFG 392

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           ++L +G+ VD  I+V E   +          +      R +  I  S  T L A + + F
Sbjct: 393 LILAVGMLVDGAIVVVEYADKRISDGVGPMSAYTEAAKRMFWPIISSTATTLCAFLPMLF 452

Query: 480 FGGGAVRGF---AITMGLSILISMFTAISIVRAM 510
           + G           T+  ++  S+  A+  +  M
Sbjct: 453 WPGIPGEFMEMLPKTLIYTLTASLLVALIYLPVM 486



 Score = 65.5 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 76/232 (32%), Gaps = 7/232 (3%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +        +    G+ + V  +R V L  +     + +    + +        L  ++ 
Sbjct: 227 IKIPSSFDDVQDIYGLPVKVNGDRVVTLGDLAEIRLAFEDRAGTARFNGDTTVALQVVKR 286

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV----GVIISAIA 679
           +  + +     ++ V +  TE  P    Q  E+        +I   +      VI +   
Sbjct: 287 KGFNLIDTVAEVKEVVEAATEEWPDELKQAVEVRYSNDQSHVISSMVSQLEGSVITAIAL 346

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           ++I +        AL     +      T   FA+ G+  N   +  ++  +G  V+  +V
Sbjct: 347 VMIVVLASLGMRSALLVGFAIPTSFLLTFALFAVLGVAINNIVMFGLILAVGMLVDGAIV 406

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           V +      K  +  +       ++        + ++     + LPM  W G
Sbjct: 407 VVE---YADKRISDGVGPMSAYTEAAKRMFWPIISSTATTLCAFLPMLFWPG 455



 Score = 50.1 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 71/210 (33%), Gaps = 21/210 (10%)

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF- 688
              T  +E + + +      + I            E           +   M I +  +F 
Sbjct: 958  TSTERIERITEWLEAGNLPTGIDYEWAGDFADQSESTAFLGKAFAGALFLMFIILLAQFN 1017

Query: 689  KWYFALGAITTLILDITKTLGFFALFGIEFN-LTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
             +Y A+  +  ++L     L    + G  F+ +     V+ L G  VN+ +V+ D  ++ 
Sbjct: 1018 SFYNAVLVLLAVVLSTAGVLFGMLVMGQSFSVIMTGTGVVALAGIVVNNNIVLIDTYQEY 1077

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM-------AVWGGSVIG----- 795
             +         + I ++  + +   + T++     + PM        + GG  +      
Sbjct: 1078 ARYMPR----IEAITRTAEDRIRPVLLTTITTMAGLAPMMFGLSLDFIGGGYSVNAPTAL 1133

Query: 796  ---SFAIPMAFGIVVAASSSIFIAAPILLF 822
                 A  + FG+ +A   ++     +L  
Sbjct: 1134 WWVQLATAVVFGLGIATILTLVFTPSMLAL 1163


>gi|229124939|ref|ZP_04254114.1| Swarming motility protein swrC [Bacillus cereus 95/8201]
 gi|228658503|gb|EEL14168.1| Swarming motility protein swrC [Bacillus cereus 95/8201]
          Length = 1038

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 196/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKDALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       ++     K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASDQGSQTAGAGAQMPQMNPAAMNGIPTVTLSEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEERLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 SEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEERLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|240140663|ref|YP_002965143.1| multidrug efflux pump [Methylobacterium extorquens AM1]
 gi|240010640|gb|ACS41866.1| multidrug efflux pump [Methylobacterium extorquens AM1]
          Length = 1076

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/544 (9%), Positives = 147/544 (27%), Gaps = 38/544 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++      +L  ++   G+   +            P  +       GL            
Sbjct: 8   LKFRITTYVLAVLMMLGGVSAIVVTPKDVLPAVDIPVVVVVWT-YTGL------------ 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              +            + + +        +  Q  + + + F  S   +    +V     
Sbjct: 55  SAPEMEKRITTYSEFGISNNVNNIARMESTSLQGTSVMKIYFDQSVSIDLAIAQVVSSTN 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + +    +  ++V  +   + ++              +       +   ++     +
Sbjct: 115 SIRALMPPGVQPPVIVRFSASSVPVIQLALTSA--KDSLNKVYDYAQYRIRQRLTQVPGS 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+  + D   L+ L  T  +++      N +    +  +          
Sbjct: 173 TLPSPFGGAPRQVMVDLDLHALQALGMTPLEVTNAVTSQNLTIPSGLAKI---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N  P     + +I    +  +         +       ++ 
Sbjct: 223 ----------GEQQYPVQMNATPDAIAALNEIPIKVVNGQPVLVRDVAYVRDGGPPQVNV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              S    +         +RA +                  +  
Sbjct: 273 VRADGAASVLMRVLKNGTASTLDVVNNVKAALPDIRAAAPEGMEIKPLFDQSVFVSNAIE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I A L  + + + +   +  L+   SI L ++ +LALL+ LG T+ + ++ G+
Sbjct: 333 GVWHEAVIAAALTGLTILLFLGSWRSTLIVLVSIPLCLMTSLALLAALGHTINVMTLGGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L +G+ VD   +  E       + +    ++  G +        S ++   A V +F  
Sbjct: 393 ALAVGILVDDVTVAIENTYRLFEEGKPFRNAVVEGAAGIAKPALISTLSICAAFVSVFAL 452

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
                      A+ +  ++L S     ++V  M+  ++  + ++       +      + 
Sbjct: 453 TDTPKYLFTPQALAVVFAMLTSYLLTRTLVPVMIDVLVAREYLQHHGGEADAPRRGRIER 512

Query: 538 IAIQ 541
             + 
Sbjct: 513 ALVW 516



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 87/232 (37%), Gaps = 7/232 (3%)

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                   + + +  F V    Q  D  A  R ++ +  +  + +P     +       + 
Sbjct: 843  PTQTVINHVNTQPTFNVYAAVQDRDLGAVARDIDRIVAEEQKTLPAPDKISVRGQIENMR 902

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
                R GI G+ I+ +A+ + + + +  W      +  L +     +    + G  F++ 
Sbjct: 903  AAFFRLGI-GLGIAVVAVYLLMAVNYQSWGDPFVVLAALPVAFCGIVASLFITGTAFSIP 961

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            ++   +  +G +  + +++    ++      T  S R+    +    L   + T+ A F+
Sbjct: 962  SLFGAIMSVGIASANSILLVTFAKE--HREATGCSAREAAIVAGETRLRPVLMTASAMFL 1019

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++PMA+    GG    + A  +  GI +   S++     +   +    AK 
Sbjct: 1020 GLVPMALGTGEGGEQNAALARAVMGGIALGTPSTLLFVPFLYSLLRRGEAKP 1071



 Score = 61.2 bits (146), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 85/278 (30%), Gaps = 5/278 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              +   +         +  +     I     I + V+  +PV +  V    +       
Sbjct: 212 NLTIPSGLAKIGEQQYPVQMNATPDAIAALNEIPIKVVNGQPVLVRDVAYVRDGGPPQVN 271

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +        +  L+     ++     ++     I    P                  I
Sbjct: 272 VVRADGAASVLMRVLKNGTASTLDVVNNVKAALPDIRAAAPEGMEIKPLFDQSVFVSNAI 331

Query: 667 RKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                  VI +A+  L  +     W   L  + ++ L +  +L   A  G   N+  +  
Sbjct: 332 EGVWHEAVIAAALTGLTILLFLGSWRSTLIVLVSIPLCLMTSLALLAALGHTINVMTLGG 391

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  V+D  V  +      +L+     FR+ + +        ++ ++++   + + 
Sbjct: 392 LALAVGILVDDVTVAIEN---TYRLFEEGKPFRNAVVEGAAGIAKPALISTLSICAAFVS 448

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +     +    F  P A  +V A  +S  +   ++  +
Sbjct: 449 VFALTDTPKYLF-TPQALAVVFAMLTSYLLTRTLVPVM 485


>gi|255691304|ref|ZP_05414979.1| heavy metal efflux pump, CzcA family [Bacteroides finegoldii DSM
           17565]
 gi|260623220|gb|EEX46091.1| heavy metal efflux pump, CzcA family [Bacteroides finegoldii DSM
           17565]
          Length = 1032

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 80/679 (11%), Positives = 189/679 (27%), Gaps = 48/679 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           + N   ++    ++   G   A+   +        P+ +     +       G       
Sbjct: 10  LHNRLLVLCASILLLIAGSYTAMHTEVDVFPDLNAPTVVIMTEAN-------GM------ 56

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +   +          S     + + + F            V+  L 
Sbjct: 57  -AAEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWGTDIYLARQIVSEKLA 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V+  L V+  K  L   +     +++     D      ++           ++  +   
Sbjct: 116 VVSESLPVNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q       + +   + DP R+R    +  ++        N          F  +     
Sbjct: 174 AQVAVLGGDIKEYQIQLDPERMRHYGVSMGEVM-AVTQDMNLNANGGVLYEFGNEYIVRG 232

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L   + E  G  +     NF                            IG     +   
Sbjct: 233 VLSTTQTEQLGKAVVKTVNNFPVTLEDIADV-----------------AIGPKAPKLGTA 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                P +   +    A  +   T +    L  + +     +K++    R       S  
Sbjct: 276 SERGKPAVLLTVTKQPATSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIG 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K +       V+IVLF+ +   +  L++  ++ L++++++  L  +G T+   S+ G+
Sbjct: 336 NVKKSLFEGGIFVVIVLFLFLANVRTTLISLVTLPLSLLVSVLTLHYMGLTINTMSLGGM 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALI 472
            + IG  VD  I+  E + +  R+N+    +        +          I +S +  ++
Sbjct: 396 AIAIGSLVDDAIVDVENVYKRLRENRLKAEAERLSTLEVVFNASKEVRMPILNSTLIIVV 455

Query: 473 ATVVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDIN 526
           + V LFF  G   R      I   +++  S   A+++   +  ++    +  K       
Sbjct: 456 SFVPLFFLSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGSNKTNKELKESFV 515

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 +    ++      R    G   LF +                 +G   + + + 
Sbjct: 516 ARWMKGIYEKALSWVLAHKRVTLGGTIALFIVALGVFFTLGRSFLPSFNEGSFTINISSL 575

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L       +  +   ++            R +            +E   +      
Sbjct: 576 PGISLEESNKMGQRAEELLLTIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELGDRSR 635

Query: 647 PLSTIQNTEIVGPKISREL 665
                   E +G      +
Sbjct: 636 SELVADVREKLGTITGANI 654



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/294 (10%), Positives = 90/294 (30%), Gaps = 11/294 (3%)

Query: 548 WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                   + +  +              K      V      D+++     +     +  
Sbjct: 220 VLYEFGNEYIVRGVLSTTQTEQLGKAVVKTVNNFPVTLEDIADVAIGPKAPKLGTASERG 279

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
                                  +  + ++ K    ++   + I             + +
Sbjct: 280 KPAVLLTVTKQPATSTLELTDKLEASLKDLQKNLPPDVKVSTDIFRQSRFIESSIGNVKK 339

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
               G I   I + +++         L ++ TL L +  ++      G+  N  ++  + 
Sbjct: 340 SLFEGGIFVVIVLFLFLA---NVRTTLISLVTLPLSLLVSVLTLHYMGLTINTMSLGGMA 396

Query: 728 TLIGYSVNDKVV----VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFIS 782
             IG  V+D +V    VY R+R+N +K     +S  +++  +  E     + +++   +S
Sbjct: 397 IAIGSLVDDAIVDVENVYKRLRENRLKAEAERLSTLEVVFNASKEVRMPILNSTLIIVVS 456

Query: 783 VLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            +P+    G    ++    I     +  +   ++ +   +  ++      N  +
Sbjct: 457 FVPLFFLSGMEGRMLVPLGIAFIVALFASTVVALTLTPVLCSYLLGSNKTNKEL 510



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/249 (14%), Positives = 94/249 (37%), Gaps = 11/249 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             VD +  R    S      S    +      V+ +     +VA   +  +V     +I  
Sbjct: 781  MVDTNDGRKVPLSYVAEVTSAMGPNTINRENVKRKIVISANVADRDLRSVVNDIRKQIDA 840

Query: 648  LSTIQ--NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFAL-GAITTLILDI 704
               +        G +   E      + +      ++I++ +  ++       +  L L +
Sbjct: 841  SVQLPEGYHIEYGGQFESEQAASRTLALTSFISIVVIFLLLYHEFRSVKESGVILLNLPL 900

Query: 705  TKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
                G FAL     E ++ A+   ++L G +  + +++      N       ++  D + 
Sbjct: 901  ALIGGVFALVLTTGEVSIPAIIGFISLFGIATRNGMLLISHY--NHLQQVEGLNVYDSVM 958

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAASSSIFIAAP 818
            +   + L   + T++++ ++++P+A+     G+ I S  A  +  G++ +   + FI   
Sbjct: 959  QGSLDRLNPILMTALSSALALIPLALGGDLPGNEIQSPMAKVILGGLLTSTFLNGFIVPI 1018

Query: 819  ILLFIYDWR 827
            + L ++  +
Sbjct: 1019 VYLMMHRKK 1027


>gi|226228019|ref|YP_002762125.1| cation efflux protein [Gemmatimonas aurantiaca T-27]
 gi|226091210|dbj|BAH39655.1| cation efflux protein [Gemmatimonas aurantiaca T-27]
          Length = 1040

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 73/604 (12%), Positives = 154/604 (25%), Gaps = 41/604 (6%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE-DDFVNGF 69
             +   + L+ A    L +   D FP                   + +      + V   
Sbjct: 14  IVVALTLALMAAGLYALQRIPFDAFPDLTGTRVEV----------ITMAPGMAPEEVERL 63

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +    +     +          +   + IT+ F D          V   L      L V 
Sbjct: 64  VTYPIESTLMGVPGAERVRSVSKFGLSLITVPFPDDMDVYFARQLVQQRLGDAKGALPVG 123

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            +  L   +T           +    ++        +IR    ++       +       
Sbjct: 124 IEPALGPVSTPMGELYQYVITSDSMSLTDLKTLHDYVIR---PRLRTVPGVSEVNSWGGY 180

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
             ++  E DP RL     T   +       + +  G        R +      VE+  EI
Sbjct: 181 TERVEVEVDPVRLAARRLTMTDVHNALERNDMAFGGSYLEQAGERFTLRGLGRVENADEI 240

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVIN 309
           +G                    +     GA              L             + 
Sbjct: 241 AG-------------------IVVGASNGAPVRVADVATVRRGALPRNGAVTKDGEGEVV 281

Query: 310 QAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIV 369
             +            IE        ++A                    + +         
Sbjct: 282 SGMVLKLKGADSRDVIERVRARMEEVKAALPAHVQITPFYDQTDLVGHTTTTIVKNLVEG 341

Query: 370 AGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVD 429
              V+ VLF+ +   +  L+    I +++++    +++ G +  L S+    L  GL VD
Sbjct: 342 GLPVIAVLFLFLRNVRAALIVASVIPISMLMAFIGMAVFGYSANLMSLGA--LDFGLIVD 399

Query: 430 SNILVNERIREENRKNQSVFC--SLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGA 484
           +++++ E        +Q        +         I       +   + +F      G  
Sbjct: 400 ASVVMVESFIRRLEHDQDGHRLGLFERAAVEVGRPILFGIAIIVAVYIPIFTLDGMEGRM 459

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
            +  A T+  ++L S+  A++ V A +          +               +     R
Sbjct: 460 FKPMAFTVVCAVLGSLLLALTYVPA-VSAWALRDVRSTPAPWLERLTERYRRALDGVIRR 518

Query: 545 ARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIG 604
            +   +   +L       L            +G I +       VDL+       + +  
Sbjct: 519 PQPLLLVSVVLVVTSLWSLSRIGTEFMPKLDEGAILVNTRRMPSVDLADATRLSLAAERI 578

Query: 605 DISF 608
            + F
Sbjct: 579 TMRF 582



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 61/146 (41%), Gaps = 4/146 (2%)

Query: 687  RFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK 746
                  A+  ++ +   +   +    + G+  NL+A    + L G +V + VV+ + +  
Sbjct: 875  FRSIPQAVLVLSNVPFALVGGVAALWMRGLNLNLSASIGFIALFGIAVLNGVVMVEHLNH 934

Query: 747  NMK-LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMA 802
                 +    S R  + +   + L   + T++ A +  +PMA+    G  V    A  + 
Sbjct: 935  LRHDAHLPDRSVRGRVRQGAADRLRPVLMTALVASLGFVPMALSTSPGSEVQRPLASVVI 994

Query: 803  FGIVVAASSSIFIAAPILLFIYDWRA 828
             G+V +   ++F+   +  ++ +WR 
Sbjct: 995  GGLVTSTVLTLFVLPVLYGWLEEWRE 1020



 Score = 37.7 bits (85), Expect = 8.4,   Method: Composition-based stats.
 Identities = 34/251 (13%), Positives = 75/251 (29%), Gaps = 37/251 (14%)

Query: 599 ESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVG 658
            +L       ++ +GE    + L+ +  DS      +    +++   +P           
Sbjct: 264 GALPRNGAVTKDGEGEVVSGMVLKLKGADSRDVIERVRARMEEVKAALPAHVQITPFYDQ 323

Query: 659 PKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
             +        +  ++      + +          AL  I   ++ I+      A  G+ 
Sbjct: 324 TDLVGHTTTTIVKNLVEGGLPVIAVLFLFLRNVRAAL--IVASVIPISM---LMAFIGM- 377

Query: 718 FNLTAVAAVLTLIGYS--------------VNDKVVVYDRM--RKNMKLYTTSISFRDLI 761
                      + GYS              V+  VV+ +    R         +   +  
Sbjct: 378 ----------AVFGYSANLMSLGALDFGLIVDASVVMVESFIRRLEHDQDGHRLGLFE-- 425

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
            ++  E     ++         +P+    G     F  PMAF +V A   S+ +A   + 
Sbjct: 426 -RAAVEVGRPILFGIAIIVAVYIPIFTLDGMEGRMF-KPMAFTVVCAVLGSLLLALTYVP 483

Query: 822 FIYDWRAKNAR 832
            +  W  ++ R
Sbjct: 484 AVSAWALRDVR 494


>gi|188583511|ref|YP_001926956.1| acriflavin resistance protein [Methylobacterium populi BJ001]
 gi|179347009|gb|ACB82421.1| acriflavin resistance protein [Methylobacterium populi BJ001]
          Length = 1080

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 52/525 (9%), Positives = 143/525 (27%), Gaps = 38/525 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++      +L  ++   G    +            P  +       GL            
Sbjct: 8   LKFRITTYVLAVLMMLGGAGAIVVTPKDVLPAVDIPVVVVVWT-YTGL------------ 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              +            + + +        +  Q  + + + F  S   +    +V     
Sbjct: 55  SAPEMEKRITTYSEFGISNNVNNIARMESTSLQGTSVMKIYFDQSVSIDLAIAQVVSSTN 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + +    +  ++V  +   + ++              +       +   ++     +
Sbjct: 115 SIRALMPPGVQPPVIVRFSASSVPVIQLALTSA--KDSLNKVYDYAQYRIRQRLTQVPGS 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+  + D   L+ L  T  +++      N +    +  +          
Sbjct: 173 TLPSPFGGAPRQVMVDLDLHALQALGMTPLEVTNAVTSQNLTIPSGLAKI---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N  P     + +I    +  +         +       ++ 
Sbjct: 223 ----------GEQQYPVQMNATPDAIAALNEIPIKVVNGQPVLVRDVAYVRDGGPPQVNV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              S    +         +RA +                  +  
Sbjct: 273 VRADGQASVLMRVLKNGTASTLDVVNNVKAALPDIRAAAPEGMEIKPLFDQSVFVSNAIE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I A L  + + + +   +  L+   SI L ++ +LALL+ LG T+ + ++ G+
Sbjct: 333 GVWHEAVIAACLTGLTILLFLGSWRSTLIVLVSIPLCLMTSLALLAALGHTINVMTLGGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L +G+ VD   +  E       + +    ++  G +        S ++   A V +F  
Sbjct: 393 ALAVGILVDDVTVAIENTYRLFEEGKPFRNAVVEGAAGIAKPALISTLSICAAFVSVFAL 452

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
                      A+ +  ++L S     ++V  ++  ++  + ++ 
Sbjct: 453 TDTPKYLFTPQALAVVFAMLTSYLLTRTLVPVLIDVLVAREYLQH 497



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/232 (14%), Positives = 84/232 (36%), Gaps = 7/232 (3%)

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                   + + +  F V    Q  D  +  R ++ +  +    +P             + 
Sbjct: 847  PTQTVINHVNTQPTFNVYAAVQDRDLGSIARDIDRIVAEEQTALPAPDKITVRGQIENMR 906

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
                R GI G+ I+ +A+ + + + +  W      +  L +     +    + G  F++ 
Sbjct: 907  AAFFRLGI-GLGIAIVAVYLLMAVNYQSWGDPFVVLAALPVAFCGIVASLFITGTAFSIP 965

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            ++   +  +G +  + +++    ++      T  S  +    +    L   + T+ A F+
Sbjct: 966  SLFGAIMSVGIASANSILLVTFAKE--HREATGCSAHEAAIIAGETRLRPVLMTASAMFL 1023

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++PMA+    GG    + A  +  GI +   S++     +   +    AK 
Sbjct: 1024 GLVPMALGTGEGGEQNAALARAVMGGIALGTPSTLLFVPFLYSLLRRGEAKP 1075



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/278 (11%), Positives = 84/278 (30%), Gaps = 5/278 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              +   +         +  +     I     I + V+  +PV +  V    +       
Sbjct: 212 NLTIPSGLAKIGEQQYPVQMNATPDAIAALNEIPIKVVNGQPVLVRDVAYVRDGGPPQVN 271

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +        +  L+     ++     ++     I    P                  I
Sbjct: 272 VVRADGQASVLMRVLKNGTASTLDVVNNVKAALPDIRAAAPEGMEIKPLFDQSVFVSNAI 331

Query: 667 RKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                  VI + +  L  +     W   L  + ++ L +  +L   A  G   N+  +  
Sbjct: 332 EGVWHEAVIAACLTGLTILLFLGSWRSTLIVLVSIPLCLMTSLALLAALGHTINVMTLGG 391

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  V+D  V  +      +L+     FR+ + +        ++ ++++   + + 
Sbjct: 392 LALAVGILVDDVTVAIEN---TYRLFEEGKPFRNAVVEGAAGIAKPALISTLSICAAFVS 448

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +     +    F  P A  +V A  +S  +   ++  +
Sbjct: 449 VFALTDTPKYLF-TPQALAVVFAMLTSYLLTRTLVPVL 485



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 59/529 (11%), Positives = 143/529 (27%), Gaps = 26/529 (4%)

Query: 11   YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHL-VLE---VDEDDFV 66
             + I  +GLL A    L       +   +  ++++L L  R G  +   E      +  V
Sbjct: 555  IATIVVVGLLFAGTGGLFVFTGQDYFPQVESSQMTLHLRTRPGMRIETAEQTFAAVEAVV 614

Query: 67   NGFLQMYSDELRSFLKKEGIGV----------FSMRQIQNKITLSFADSRFKENIADKVT 116
               +     E+   L   G+              +     ++ +   D      +A+   
Sbjct: 615  RETI--PEGEIDQILDNIGLPSNNYNFAFSDGSFVSYNDGQMLIDLKDEHGP--VAEYQR 670

Query: 117  LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
               + +  +               + ++  +      QV      + +E+ R+   ++  
Sbjct: 671  RLRETLRERFPDMIVYFQPSDIITQILNFGVIAQIDVQVSGRNTVKDLEVARRIEARLKE 730

Query: 177  SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
            +   +       +           RL   LG T +     +  + S    +    +    
Sbjct: 731  TPGLVDVHLHQIVDTPQFFVDVDRRLASELGLTQQQVAQSLNVSLSGSFQVNPNFWTDPK 790

Query: 237  DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
             G  Y    ++ +        +      T       +    G          +I      
Sbjct: 791  TGIPY----QLWVQTPEYRNDSLTALQNTPLFARANAGGRDGTGPGALTLLSSIATITRQ 846

Query: 297  VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                 +               Q     +I             +LP    I     +    
Sbjct: 847  PTQTVINHVNTQPTFNVYAAVQDRDLGSIARDIDRIVAEEQTALPAPDKITVRGQIENMR 906

Query: 357  GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
             +         I    V +++ +         V   ++ +     +A L + G   ++PS
Sbjct: 907  AAFFRLGIGLGIAIVAVYLLMAVNYQSWGDPFVVLAALPVAFCGIVASLFITGTAFSIPS 966

Query: 417  IAGIVLGIGLAVDSNILVNERIREENR-KNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
            + G ++ +G+A  ++IL+    +E       S   +  +        +  +     +  V
Sbjct: 967  LFGAIMSVGIASANSILLVTFAKEHREATGCSAHEAAIIAGETRLRPVLMTASAMFLGLV 1026

Query: 476  VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             +      GG      A  +   I +   + +  V  +   + R +   
Sbjct: 1027 PMALGTGEGGEQNAALARAVMGGIALGTPSTLLFVPFLYSLLRRGEAKP 1075


>gi|90021576|ref|YP_527403.1| Co/Zn/Cd efflux system membrane component [Saccharophagus degradans
           2-40]
 gi|89951176|gb|ABD81191.1| Heavy metal efflux pump CzcA [Saccharophagus degradans 2-40]
          Length = 1039

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 70/590 (11%), Positives = 158/590 (26%), Gaps = 39/590 (6%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           N +LV+L +MI     L +L     Q+ +D  P       I                   
Sbjct: 12  NRFLVLLATMILIGVGLYSL----KQTPVDAIPDLSDVQVI---------IKTSYPGQAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   +          +              + + + F +         +V  +L  V 
Sbjct: 59  QVVEDQVTYPLTTAMLSVPGAVTVRGYSFFGDSYVYVIFDEDTDLYWARSRVLEYLSQVA 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    K  L    T      + S            +           ++       + 
Sbjct: 119 PTLPAAAKPQLGPDATGVGWVYIYS-LIDRSGQHDISQLRSLQDWFLKYELQTVPGVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q      P +LR      A +       N      +  +            +
Sbjct: 178 AAVGGMVKQYQVTVSPEKLRAFNIPLAHIQMAIKQANQEVGASVVEMAEAEYMVRASGYI 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +++ ++                    + +  +  G     +   D    P        + 
Sbjct: 238 QNEADL------------------ANIPLGVNSNGTPLLLKDVADIGIGPQMRRGIAELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   +   +   +   TI         L+AG       +      G    +     
Sbjct: 280 GEGETVGGVVVMRFGENAQTTINGVKAKLEQLQAGLPEGVEVVTVYDRSGLIERAVENLW 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   +V +V  + + + +  LVA  S+ + ++    ++ + G    + S+ GI + 
Sbjct: 340 HKLLEEFVVVALVCMIFLFHVRSSLVAIVSLPVGILTAFIIMHVQGINANIMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           IG  +D  I++ E + +         ++ +  +          +F S +   ++ V +F 
Sbjct: 400 IGAMIDGAIVMIENMHKHMEHTPITKENRWQIVTESAVEVGPALFFSLLIITVSFVPVFT 459

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G      A T   ++  S   AI++V  +M + IR K +                
Sbjct: 460 LEAQEGRMFSPLAFTKTYAMAASAALAITLVPVLMGYFIRGKVLPEHKNPVNQFLIASYM 519

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                 ++     +  +++        L   G  +      G  + +   
Sbjct: 520 PALKGVLKFPKITILCAVIVLASVYWPLQKIGSEFIPPLDEGDLMYMPTT 569



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 22/262 (8%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       + L  V     +     I  +N        V +      +  +     + K
Sbjct: 780  PIVTPKGERIALGDVAKVSIADGPPGIKSENARINGWTFVDIDGVDVGTYVENAKEIVAK 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT- 698
            +                   +   +L  + +V + ++ IA+L+++  R    FA  AI  
Sbjct: 840  QLELPAGYSIGWSGQYEYMVRAKEKL--QYVVPLTLAIIAILLFLNFR---NFAHVAIIL 894

Query: 699  -TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY-----------DRMRK 746
             +L L +  ++    L G  F++      + L G +    V++             R ++
Sbjct: 895  GSLPLALVGSIWLIYLLGFNFSVAVGVGFIALAGVATELSVIMLVFLEICWRQHIKRAQE 954

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
              +  T S      I +     +   V T+ A  I +LP+      G  V+   A PM  
Sbjct: 955  EGRK-TNSDDLHQAIIEGGALRVRPKVMTASAIIIGLLPIMYGSGTGSEVMSRIAAPMVG 1013

Query: 804  GIVVAASSSIFIAAPILLFIYD 825
            G++ A   ++ +   + L    
Sbjct: 1014 GMLSALVLTLLVLPAVYLLWKR 1035



 Score = 51.6 bits (121), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           V+++ + M+      F    +L AI +L + I        + GI  N+ ++  +   IG 
Sbjct: 347 VVVALVCMI----FLFHVRSSLVAIVSLPVGILTAFIIMHVQGINANIMSLGGIAIAIGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
            ++  +V+ + M K+M+    T  +   ++ +S  E      ++ +   +S +P+     
Sbjct: 403 MIDGAIVMIENMHKHMEHTPITKENRWQIVTESAVEVGPALFFSLLIITVSFVPVFTLEA 462

Query: 792 SVIGSFA 798
                F+
Sbjct: 463 QEGRMFS 469


>gi|116626551|ref|YP_828707.1| CzcA family heavy metal efflux protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229713|gb|ABJ88422.1| heavy metal efflux pump, CzcA family [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1083

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 59/522 (11%), Positives = 136/522 (26%), Gaps = 39/522 (7%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
               +   GL +A    +    LD  P       I      R            D +   
Sbjct: 14  FLVFLFVAGLALAGFWSMNHIPLDAIPDLSDTQVIIYSRWDR----------SPDILEDQ 63

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           +            K            + + + F +         +   +L  +  +L  D
Sbjct: 64  VTYPIVSAMLGAPKVKDVRGFSDFGYSYVYIIFEEGTDIYWARSRTLEYLSKIQPRLPKD 123

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
            +  +    T        +  +      +               +       +       
Sbjct: 124 VQTEIGPDATGVGWVFQYALVSDAGQSHNLALLRSTQDWYLRYHLQSVPGVAEVAPLGGF 183

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           + Q     DP+RL       +K+                         GN  +    VE 
Sbjct: 184 VRQYQVNVDPNRLAAYAVPISKVVAAVRS-------------------GNNDVGGRLVEF 224

Query: 250 SGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTA-PVI 308
           +G         +                            +     +      L     +
Sbjct: 225 TGREYMVRGRGYARSPSDLESLSLAVSPSGVPVLLRDVGTVTLGPDIRRGVADLDGRGEV 284

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +   +    IE        L  G       +         L S    K T   
Sbjct: 285 VSGIVVMRQGENALKVIERVKAKLKELEPGLPAGVKIVTAYDRSELILASIDNLKHTLTE 344

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              +V +V+ + + +    L+   +I + V+++   +  +G +  + S+ GI + +G  V
Sbjct: 345 ELIVVGLVILVFLWHIPSALIPIVTIPIAVLISFIPMHAMGMSSNIMSLGGIAIAVGAMV 404

Query: 429 DSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF--- 479
           D+ I+V E+  ++      +        ++           F + +   ++ + +     
Sbjct: 405 DAAIVVVEQTHKKLEGAGPDWTTHDYRRAIVNAVKEVGGPSFFALLVIAVSFLPVLTLEA 464

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK 521
             G   +  A T   +++ +   AI++  A+ +   R +  +
Sbjct: 465 QEGRLFKPLAYTKNFAMVTAAVLAITLDPALRLLFFRKENFR 506



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 67/161 (41%), Gaps = 9/161 (5%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I+  + +L+++W       AL  I T+ + +  +       G+  N+ ++  +   +G 
Sbjct: 346 LIVVGLVILVFLW---HIPSALIPIVTIPIAVLISFIPMHAMGMSSNIMSLGGIAIAVGA 402

Query: 733 SVNDKVVVYDRMRKNMKLYT---TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            V+  +VV ++  K ++      T+  +R  I  ++ E  G S +  +   +S LP+   
Sbjct: 403 MVDAAIVVVEQTHKKLEGAGPDWTTHDYRRAIVNAVKEVGGPSFFALLVIAVSFLPVLTL 462

Query: 790 GGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                 +    A    F +V AA  +I +   + L  +   
Sbjct: 463 EAQEGRLFKPLAYTKNFAMVTAAVLAITLDPALRLLFFRKE 503



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 9/149 (6%)

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMK- 749
            L  +  +       +      G   ++     ++ L+G      V +    D   +  + 
Sbjct: 935  LIILLAVPFSAIGAIWLLYGLGYNMSIGVWVGLIALMGVDAETGVFMLLYLDLAYEERRL 994

Query: 750  --LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                 T    R+ I     + +   V T    F+ + P+      G  V+   A PM  G
Sbjct: 995  SGRMKTRTDLREAIVHGAVQRIRPKVMTVATMFVGLAPIMWSAGSGADVMKRIAAPMIGG 1054

Query: 805  IVVAASSSIFIAAPILLFIYDWRAKNARI 833
            I  +    + +   I         K   +
Sbjct: 1055 IFTSFILELAVYPAIYEVWKWRSVKPQSV 1083


>gi|289552454|ref|ZP_06441664.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis KZN
           605]
 gi|289437086|gb|EFD19579.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis KZN
           605]
          Length = 965

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 63/532 (11%), Positives = 163/532 (30%), Gaps = 63/532 (11%)

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                 +  +     +  +VL+ +F  +      L       +  +  + +LS+      
Sbjct: 172 NTKHDIANAERWNLPIILMVLVAVFGSLAAAAIPLALAVCTVVITMGLVFVLSMHTTMSV 231

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             +    + GI LAVD ++ +  R REE R  +    ++D   + +   +  S +T + +
Sbjct: 232 FVTSTVSMFGIALAVDYSLFILMRYREELRCGRRPPDAVDAAMATSGLAVVLSGMTVIAS 291

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDINPLS 529
              ++     A+R  A    L++ ++M T+ ++  A++    R    +         P S
Sbjct: 292 LTGIYLINTPALRSMATGAILAVAVAMLTSATLTPAVLATFARAAAKRSALVHWSRRPAS 351

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA---- 585
                        MR  +     +    +          L   +  +      +      
Sbjct: 352 TQSWFWSRWVGWVMRRPWITALAASTVLLVMAAPATLMVLGNSLLRQFDSSHEIRTGAAA 411

Query: 586 ---------------------------NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                                           ++ +R  +               + N  
Sbjct: 412 AAQALGPGALGPVQVLVRFDAGGASAPEHSQTIAAIRHRIAQAPNVVSVAPPRFADDNGS 471

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VII 675
             L              + +    T++  ++     ++ GP    +     +     +++
Sbjct: 472 ALLSAVLSVDPEDLGARDTITWMRTQLPRVAGAAQVDVGGPTALIKDFDDRVSATQPLVL 531

Query: 676 SAIAMLIYIWIRFKWY---FALGAITTLILDITKT---------------LGFFALFGIE 717
             +A++ ++ +         A   +   +L +                  LGF AL  I+
Sbjct: 532 VFVAVIAFLMLLISIRSVFLAFKGVLMTLLSVAAAYGSLVMVFQWGWARGLGFPALHSID 591

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             +  +  +    G S++ ++ +  R+R+    +  +   RD +   +  T  R++ ++ 
Sbjct: 592 STVPPL-VLAMTFGLSMDYEIFLLTRIRE---RFLQTGQTRDAVAYGV-RTSARTITSAA 646

Query: 778 AAFISVLPMAVW-GGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
              I+V     + G  ++    +  A  I V      + +   ++     W 
Sbjct: 647 LIMIAVFCGFAFAGMPLVAEIGVACAVAIAVDATVVRLVLVPALMAMFDRWN 698



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 61/159 (38%), Gaps = 6/159 (3%)

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIG--YSV 734
           I +++ + +      A   +   +  +  T+G   +  +   ++  V + +++ G   +V
Sbjct: 187 IILMVLVAVFGSLAAAAIPLALAVCTVVITMGLVFVLSMHTTMSVFVTSTVSMFGIALAV 246

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  + +  R R+ ++         D +D ++  +    V + M    S+  + +     +
Sbjct: 247 DYSLFILMRYREELRCGRR---PPDAVDAAMATSGLAVVLSGMTVIASLTGIYLINTPAL 303

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            S A      + VA  +S  +   +L       AK + +
Sbjct: 304 RSMATGAILAVAVAMLTSATLTPAVLATFARAAAKRSAL 342


>gi|207722510|ref|YP_002252946.1| transport protein [Ralstonia solanacearum MolK2]
 gi|206587692|emb|CAQ18274.1| transport protein [Ralstonia solanacearum MolK2]
          Length = 1068

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 78/639 (12%), Positives = 170/639 (26%), Gaps = 47/639 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRI---SLGLDLRGGSHL 56
           +R          ++  + +L+A P  L +   D FP   +P   I     GL        
Sbjct: 8   LRRPLT-----FIVLALLILLATPFVLMRMATDIFPEIDIPVCSIIWNYNGLP------- 55

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                  +  +  + +    L + +                I + F  +   +    ++ 
Sbjct: 56  -----AKEMADRIVSVTERSLTTTVNDIEHIESQSLNGVAIIKVFFQPTANIQTALAQIV 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
              Q    +L       L++  +   I I+    +   +     E +   +     ++  
Sbjct: 111 SVSQAQLRQLPPGITPPLVIKYSASSIPILQLGLSSTTLSEQ--ELNDAALNFLRPRLIT 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                          Q+  + D  +L     T   +       N         +     +
Sbjct: 169 VPGIAVPFPYGGKSRQITVDLDTQKLLAQGLTPTDIVNAVSAQNLILPAGTQKIDASEYA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                      +++                     +                N+    + 
Sbjct: 229 VALNGTPGTIAQLNA--------------------MPVRTSNGATLVLGDVANVRDGFSP 268

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
             +                    S    +     L  +  A                   
Sbjct: 269 QTNAVRQDGQRGVLLSILKNGGASTLDIVNNLYKLLPVASAALPQDIKITPLFDQSLFVK 328

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +         I A L   ++ + +   +   +   SI L+++ ++ +L LLG T+ L +
Sbjct: 329 AAIEGVIREALIAACLTAAMILLFLGNWRSTAIIAVSIPLSILSSIIVLHLLGETINLMT 388

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+ L +G+ VD   +  E I     + +    ++  G +      F S I   I  V 
Sbjct: 389 LGGLALAVGILVDDATVTIENIERHLHEGKEPVTAILDGAAEIAVPAFVSTICICIVFVP 448

Query: 477 LFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFF 532
           +FF  G         A  +  ++L S   + ++V  +++ ++             LS F 
Sbjct: 449 MFFLTGVARYLFVPMAEAVIFAMLASYVLSRTLVPTLVMMLMTGHTEDAKRPGRGLSTFR 508

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I      QF   R     I             +            + LG      VD  
Sbjct: 509 RIYLAFNAQFEHMRGNYAAILGGLLERRRAFAMSFLGFCVASCALYLVLGRDFFPDVDAG 568

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            +R ++ +     I       ++         P + +A 
Sbjct: 569 QIRLHMRAPSGLRIEETARLADEVEAAIRTLIPRNELAT 607



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 67/165 (40%), Gaps = 7/165 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            VG++++ + + + I + F  W   L  +T L   +        + G   ++ ++   +  
Sbjct: 893  VGLVMAIVLVYLLIVVNFQSWIDPLIIVTALPAALAGIAWMLFVTGTTLSVPSLTGAIMT 952

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + +++    R+ +      I+      ++    L   + T++A  I ++PMA+ 
Sbjct: 953  MGVATANSILLISFARERLHE---GIAPIQAALEAGATRLRPVLMTALAMIIGMVPMALG 1009

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G          +  G++ A  S++F    +   ++    + A
Sbjct: 1010 LGEGAEQNAPLGRAVIGGLLFATVSTLFFVPVVFASVHGRLQRRA 1054



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 74/191 (38%), Gaps = 7/191 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           ++L +    + + + ++ + +  +        +IR+ ++   ++A  +L+++     W  
Sbjct: 302 KLLPVASAALPQDIKITPLFDQSLFVKAAIEGVIREALIAACLTAAMILLFLG---NWRS 358

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                 ++ L I  ++    L G   NL  +  +   +G  V+D  V  + +    +   
Sbjct: 359 TAIIAVSIPLSILSSIIVLHLLGETINLMTLGGLALAVGILVDDATVTIENI---ERHLH 415

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                   I     E    +  +++   I  +PM    G     F +PMA  ++ A  +S
Sbjct: 416 EGKEPVTAILDGAAEIAVPAFVSTICICIVFVPMFFLTGVARYLF-VPMAEAVIFAMLAS 474

Query: 813 IFIAAPILLFI 823
             ++  ++  +
Sbjct: 475 YVLSRTLVPTL 485


>gi|194292893|ref|YP_002008800.1| cation efflux system protein, heavy metal resistance [Cupriavidus
           taiwanensis LMG 19424]
 gi|193226797|emb|CAQ72748.1| Cation efflux system protein, heavy metal resistance [Cupriavidus
           taiwanensis LMG 19424]
          Length = 1064

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 59/604 (9%), Positives = 146/604 (24%), Gaps = 68/604 (11%)

Query: 5   PWLVILYSM-ICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            WLV+L  + +  +GL         +  +D  P                 +++ ++++  
Sbjct: 21  RWLVLLAVLGMAALGLYS-----YTRLPIDAVPDI---------------TNVQVQINTA 60

Query: 64  DF------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    + + + L          R   +++T+ F D          V  
Sbjct: 61  APGYSPLETEQRITYPVETVMAGLPGLEQTRSLSRYGLSQVTVIFRDGTDIHFARQLVNQ 120

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRI 171
            +Q    +L       +   +T      + +                  +          
Sbjct: 121 RIQEARDQLPPGITPAMGPISTGLGEIYLWTVEADPGARKPDGTAYTLSDLREIQDWVIR 180

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            Q+       +               D  R+     + A +       N++        R
Sbjct: 181 PQLRNVPGVTEVNAIGGHARAYVVAPDLERMASYGLSLADVVGALEKNNDNVGAGYIERR 240

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             +        V    EI                     D+       +        ++ 
Sbjct: 241 GEQYLVRVPGQVRSLDEIG--------------------DVIVGSAQGQPIRVRDVASVQ 280

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
               +           +           +     +      A +          +     
Sbjct: 281 TGGELRTGAATENGREVVLGTVFMLIGENSRAVSQAVDRKMAEINRTLPAGVKAVTVYDR 340

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                 +    K      A LV+ +LF+ +   +  L+    I L+++ T   +     +
Sbjct: 341 TTLVDKAIGTVKKNLLEGAVLVIAILFLFLGNLRAALITALVIPLSMLFTFTGMVHYRIS 400

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRK----------NQSVFCSLDMGFSRAYS 461
             L S+  +  GI   VD  +++ E                         +      A  
Sbjct: 401 ANLMSLGALDFGII--VDGAVVIVENCVRRLAHAQAARGRALTRDERLQEVFAAAREARR 458

Query: 462 TIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK 518
            +    +  ++  + +F      G      A T+ L++L +M  +++ V A +   I  +
Sbjct: 459 PLLYGQLIIMVVYLPIFALTGVEGKMFHPMAFTVVLALLGAMVLSVTFVPAAVALFIGNR 518

Query: 519 KMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGG 578
             +  +             +            G  +   +C                +G 
Sbjct: 519 VAERENRLMAWARRRYAVLLERALAGTPVVLAGAGVAVMLCLAIATRLGSEFVPSLNEGD 578

Query: 579 IQLG 582
           + + 
Sbjct: 579 LAVQ 582



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 83/235 (35%), Gaps = 8/235 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S L S+++     Q         + +          + V E        +   +    + 
Sbjct: 816  SELASVEMAPGPNQVSRENGKRRIVVSANVRGRDIGSFVPEAEAAIRARVQIPAGYWTSW 875

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +  +    +  V V ++   + + ++  F      L   T +   +T  +    L 
Sbjct: 876  GGTFEQLQSATARLRVVVPLALGLVFVLLFAMFGNVKDGLLVFTGIPFALTGGILALWLR 935

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
            GI  +++A    + L G +V + +V+   +R    L  +       I +     L   + 
Sbjct: 936  GIPLSISAAVGFIALCGVAVLNGLVMLSFIR---SLRESGYGLDHAIREGALTRLRPVLM 992

Query: 775  TSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            T++ A +  +PMA+    G  V    A  +  GI+ + + ++ +  P+L  +   
Sbjct: 993  TALVASLGFVPMALATGTGAEVQRPLATVVIGGILSSTALTLLVL-PVLYRLAHR 1046



 Score = 44.3 bits (102), Expect = 0.091,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 14/173 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + I          AL     + L +  T      + I  NL ++ A+    G 
Sbjct: 356 LEGAVLVIAILFLFLGNLRAALITALVIPLSMLFTFTGMVHYRISANLMSLGAL--DFGI 413

Query: 733 SVNDKVVVYDRMRKNMKLYT-------TSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
            V+  VV+ +   + +           T       +  +  E     +Y  +   +  LP
Sbjct: 414 IVDGAVVIVENCVRRLAHAQAARGRALTRDERLQEVFAAAREARRPLLYGQLIIMVVYLP 473

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW-RAKNARI 833
           +    G    +    A  +   ++ A   S+ F+ A + LFI +    +  R+
Sbjct: 474 IFALTGVEGKMFHPMAFTVVLALLGAMVLSVTFVPAAVALFIGNRVAERENRL 526


>gi|255035375|ref|YP_003085996.1| heavy metal efflux pump, CzcA family [Dyadobacter fermentans DSM
           18053]
 gi|254948131|gb|ACT92831.1| heavy metal efflux pump, CzcA family [Dyadobacter fermentans DSM
           18053]
          Length = 1439

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 72/581 (12%), Positives = 155/581 (26%), Gaps = 47/581 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   + I    +   GL  A         +D  P                   + L   
Sbjct: 11  RNKLVVGIFTLTLIVWGLWSA-----SNLPVDAVPDITNNQVQV----------ITLTPT 55

Query: 62  -EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                    +    ++  + L          R   + IT+ F D          +T  L+
Sbjct: 56  LAAQETEQLVTYPIEQSLANLPDLVEMRSISRFGLSVITVVFEDDTDIYFARQLITERLK 115

Query: 121 GVNSKLNVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
                +           + T   +    V+      +    A+E           Q+  +
Sbjct: 116 EAEQNIPKGIGTPELAPVSTGLGEIFQYVIHPKKGAENKYSAMELRTMQDWIVARQLYGT 175

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
               +      +L Q     +P +L+ +  T A +       N +  G            
Sbjct: 176 RGVAEVNSFGGLLKQYEVAVNPQKLKGMNVTIADIFEALAQNNENTGGAYIDKMPNAYFI 235

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
               LV    +I  I +               V +          +   ++ +G  + ++
Sbjct: 236 RGIGLVSSLDDIRAIVVKNVNGIPVLIRDVAEVRLGHAVRYGSVTYNGEKEVVGGIVMML 295

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                                 +    +         +R                     
Sbjct: 296 K-------------------GSNSAAVVARVKEKMETIRKSLPADVEIEAFLDRTDLVNR 336

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + S  +      A +V+ VL + +   + GL+   +I L ++  L ++   G +  L S+
Sbjct: 337 AISTVRTNLIEGALIVIFVLVLFLGNLRAGLIVASAIPLAMLFALGMMHTFGVSANLMSL 396

Query: 418 AGI--VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI------- 468
             I   L +  AV     V   +       +     +D     + S I +S         
Sbjct: 397 GAIDFGLIVDGAVIIVEAVLHHLALRKTTGRLTQDEMDQEVFESASRIRNSAAFGEIIIL 456

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              I  + L    G   R  A T+  +IL ++  +++ +  M   ++         ++  
Sbjct: 457 IVYIPILSLVGIEGKMFRPMAQTVSFAILGALLLSLTYIPMMAALVLPKTVSDKKTLSDK 516

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGL 569
               +      +     RF    I++   +  + +L    +
Sbjct: 517 MMAHMQALYAPVLAWAIRFRIAVIAVTMVVFGVAVLLFVRM 557



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/236 (16%), Positives = 93/236 (39%), Gaps = 8/236 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + ++   +   Q    +    + + +       Q+ V E+  K     +  +      
Sbjct: 800  SQVATVAFREGPAQISREDGKRRIVVGFNVRGRDVQSVVEEIQGKLAAAKLLPTGYYYIY 859

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +  ++   + ++ V I+ + +L+ ++  F   FA   +    + ++   G FAL  
Sbjct: 860  GGTFENLQKATSRLLIAVPIALLLILVLLYFTFG-SFAEALLIFTAIPMSAIGGVFALLL 918

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G+ F+++A    + L G +V + +V+     +  K     ++ R  I +     L   +
Sbjct: 919  RGMPFSISAGVGFIALSGVAVLNGIVLVSTFNQLKKSGFDQLTPR--IVEGTKIRLRPVL 976

Query: 774  YTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             T+  A +  LPMA+    G  V    A  +  G+V A   ++ +   + L++   
Sbjct: 977  MTATVASLGFLPMALSHGAGAEVQKPLATVVIGGLVTATFLTLVVLPLLYLWLEKR 1032



 Score = 46.6 bits (108), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/149 (18%), Positives = 61/149 (40%), Gaps = 10/149 (6%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + I + + +         L   + + L +   LG    FG+  NL ++ A+    G 
Sbjct: 346 IEGALIVIFVLVLFLGNLRAGLIVASAIPLAMLFALGMMHTFGVSANLMSLGAI--DFGL 403

Query: 733 SVNDKVVVYDRMRKNMK-LYTTSISFRDLIDKSINETLGRSVYTSM-------AAFISVL 784
            V+  V++ + +  ++    TT    +D +D+ + E+  R   ++          +I +L
Sbjct: 404 IVDGAVIIVEAVLHHLALRKTTGRLTQDEMDQEVFESASRIRNSAAFGEIIILIVYIPIL 463

Query: 785 PMAVWGGSVIGSFAIPMAFGIVVAASSSI 813
            +    G +    A  ++F I+ A   S+
Sbjct: 464 SLVGIEGKMFRPMAQTVSFAILGALLLSL 492


>gi|295689907|ref|YP_003593600.1| heavy metal efflux pump, CzcA family [Caulobacter segnis ATCC
           21756]
 gi|295431810|gb|ADG10982.1| heavy metal efflux pump, CzcA family [Caulobacter segnis ATCC
           21756]
          Length = 1039

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/666 (11%), Positives = 175/666 (26%), Gaps = 45/666 (6%)

Query: 5   PWLVI--LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            W V    + ++  + L++A    +  + +D  P       I                  
Sbjct: 7   RWSVANRFFVLLGALALIVAGSLSVRSTSIDALPDLSDTQVI---------IRTSYPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQLVENQVTYPLATTMLSVPGAKTVRGYSFFGDSFVYVIFDDKTDLYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L    +  L    T                     +           ++       +
Sbjct: 118 QSRLPESARPALGPDATGVGWVYEY-ALVDKTGAHDLSQLRSLQDWFLRYELKTLPGVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +L     T  ++       N    G +  +            
Sbjct: 177 VSAIGGMVRQYQVVLDPMKLASFGVTHQQVVAALKGANAETGGSVLELGEAEYMVRATGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           ++                         V +     G              P        +
Sbjct: 237 LKT------------------FEDFQAVPLRTAAGGVPVRLGDVATIQVGPEMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI         L+    P    +      G    +    
Sbjct: 279 NGQGEVAGGVVILRSGENARTTIAAVKAKLVELKKSLPPGVEVVTTYDRSGLIDRAVHNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
            G       +V +V  + + + +  LVA  S+ L V+    ++   G    + S+ GI +
Sbjct: 339 TGKLLEEFLVVALVCALFLGHLRSALVAILSLPLGVLAAFLVMKSQGVDANIMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNITAL 471
            IG  VD+ +++ E   ++  +            ++ +  +    +     +F S +   
Sbjct: 399 AIGAMVDAAVVMIENAHKKLERWAHKHPGETLAGETRWAVITEAAAEVGPALFFSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G   R  A T   ++  +   +++++  +M ++IR +          
Sbjct: 459 LSFIPVFTLQAQEGRLFRPLAFTKTYAMAAAAILSVTLIPVLMGYLIRGRIPDEAANPIN 518

Query: 529 SRFFLIPDCIAIQFMRA-RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                    +  + MR  R   +   + F+  +  L    G       +G +     A  
Sbjct: 519 RVLSAAYRPLLDRVMRRPRTTLLVALLAFATTAWPLAHLGGEFMPSMDEGDLLYMPSALP 578

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            +  +     L+       +    D       R +     +  +     +  K   +  P
Sbjct: 579 GLSAAKAGQLLQQTDRMIKTVPEVDSVFGKAGRAESATDPAPLEMFETTIRFKPRDQWRP 638

Query: 648 LSTIQN 653
             T   
Sbjct: 639 GMTPDK 644



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/287 (10%), Positives = 88/287 (30%), Gaps = 15/287 (5%)

Query: 555 LFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGE 614
                +  L                 + V       + V       +   +   +   G 
Sbjct: 229 YMVRATGYLKTFEDFQAVPLRTAAGGVPVRLGDVATIQVGPEMRRGIAELNGQGEVAGGV 288

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                    +   +  + +++E+ K     +  ++T   + ++   +     +     ++
Sbjct: 289 VILRSGENARTTIAAVKAKLVELKKSLPPGVEVVTTYDRSGLIDRAVHNLTGKLLEEFLV 348

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
           ++ +  L           AL AI +L L +          G++ N+ ++  +   IG  V
Sbjct: 349 VALVCAL----FLGHLRSALVAILSLPLGVLAAFLVMKSQGVDANIMSLGGIAIAIGAMV 404

Query: 735 NDKVVVYDRMR---KNMKLYTTSISFR-----DLIDKSINETLGRSVYTSMAAFISVLPM 786
           +  VV+ +      +         +        +I ++  E      ++ +   +S +P+
Sbjct: 405 DAAVVMIENAHKKLERWAHKHPGETLAGETRWAVITEAAAEVGPALFFSLLIITLSFIPV 464

Query: 787 AVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                    +    A    + +  AA  S+ +   ++ ++   R  +
Sbjct: 465 FTLQAQEGRLFRPLAFTKTYAMAAAAILSVTLIPVLMGYLIRGRIPD 511



 Score = 49.3 bits (115), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 75/249 (30%), Gaps = 13/249 (5%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             + L  V     +     +  +N        V ++ +   SV       + +K       
Sbjct: 795  QITLGTVAEIQIADGPPMLKSENGRPTTWVYVDVRGRDLASVVGDLRQAVDQKVRLSPGV 854

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
              +         + +  L     + V  + + + + +++ F+  F    +    L    T
Sbjct: 855  SLSYSGQFEYLQRAADRLK----IVVPATLLIIFVLLYVIFR-RFDEAGLIMATLPFALT 909

Query: 708  LGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRD---LID 762
             G     L G   ++      + L G S    VV+   ++  M       +       + 
Sbjct: 910  GGIWTLYLAGFHQSVATGVGFIALAGVSAEFGVVMLIYLKHAMDTLGPDPTPDQVEAAVR 969

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPI 819
            +     +     T       + P+      G  V+   A PM  G++ A   S+F+    
Sbjct: 970  EGALLRVRPKAMTVAVILAGLAPILWGHGTGSEVMSRIAAPMIGGMLTAPLLSMFVIPAG 1029

Query: 820  LLFIYDWRA 828
             L +   + 
Sbjct: 1030 YLLLRRRKE 1038


>gi|239979052|ref|ZP_04701576.1| cation/multidrug efflux protein [Streptomyces albus J1074]
 gi|291450930|ref|ZP_06590320.1| cation/multidrug efflux protein [Streptomyces albus J1074]
 gi|291353879|gb|EFE80781.1| cation/multidrug efflux protein [Streptomyces albus J1074]
          Length = 1065

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 65/518 (12%), Positives = 157/518 (30%), Gaps = 19/518 (3%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  ++  I LL      +PQ      PS        L               
Sbjct: 6   RFSLAQRALIGLMSIIALLFGA-IAIPQLKQQLLPSIELPMVSVLAP---------YPGA 55

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFA-DSRFKENIADKVTLFLQ 120
             D V   +    ++    ++       +  +    +   F   S   + +   +   + 
Sbjct: 56  SPDVVEKQVVEPLEKSIDAVEGITGITATASEGNAVLMAQFDFGSADTQQLVADIQQAVN 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              + L  D    ++  +T+   ++VL+  +           + ++ R  +  +   +  
Sbjct: 116 RSRAMLPDDVDPQVVAGSTDDIPTVVLAVTSDKDQQ----ALAGQLERTVVPSLESIDGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q        +Q+    D + L +   ++A +         +     F  +    +    
Sbjct: 172 GQVSVDGVRELQIAVTPDDADLAKAGLSSADLVQALQAAGATVPAGSFDEKGENRTVQVG 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARR-FFEVTRDNIGKPLAVVLD 299
                  +I  + +  A      +          D   A       +   + +  A    
Sbjct: 232 GGFTSVKQIEDLRIAPAAGGQGGQGGPGAQAGPGDAGKAPAPVRLGSVAKVEQQQATATS 291

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
                       + +     S     +        LRA         V      A   S 
Sbjct: 292 LTRTNGEPSLAVVVTMDRDGSAVAISDAVAEKLPELRADLGDSSELTVVSDQGPAVAKSI 351

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                  A+     ++++ + +   +  LV   SI L+V+L L +L     +L + ++  
Sbjct: 352 EGLTTEGALGLVFAVVIILVFLASIRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGA 411

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           + + IG  VD +I+V E I+      +    ++          +  + +T +   + +  
Sbjct: 412 LTIAIGRVVDDSIVVLENIKRHLGYGEERKEAILTAVKEVAGAVTSATLTTVAVFLPIGL 471

Query: 480 FGGG---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
            GG        F++T+  ++L S+  ++++V  +  + 
Sbjct: 472 VGGMVGELFGSFSLTVTAALLASLLVSLTVVPVLSFWF 509



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/215 (12%), Positives = 73/215 (33%), Gaps = 8/215 (3%)

Query: 615  KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                         +     V   ++ KI  +        T         E   +  + ++
Sbjct: 816  DGSRAATVTARPTADNTGAVTAELQTKINALELPEGATATIGGVSADQDEAFGQLGLAML 875

Query: 675  ISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
             +   + + +   F+     L  + ++    T  +G     G    + A+  +L LIG  
Sbjct: 876  AAIAIVFMLLVATFRSLVQPLILLVSIPFAATGAVGLLIATGTPMGVPAMIGMLMLIGIV 935

Query: 734  VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---- 789
            V + +V+ D + +            + + +         + T++A   +++PMA+     
Sbjct: 936  VTNAIVLIDLINQYR---DKGYGIIEAVIEGGRHRFRPILMTALATIFALIPMALGVTGE 992

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
            GG +    A+ +  G++ +   ++ +   +   + 
Sbjct: 993  GGFIAQPLAVVVIGGLITSTVLTLVLVPTLYAMVE 1027



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 69/184 (37%), Gaps = 16/184 (8%)

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
           S A    L  ++  + +   L+ + +      K    L  +G +G++ + + +L+++   
Sbjct: 317 SDAVAEKLPELRADLGDSSELTVVSDQGPAVAKSIEGLTTEGALGLVFAVVIILVFLA-- 374

Query: 688 FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 L    ++ L +   L       +  N+  + A+   IG  V+D +VV + ++  
Sbjct: 375 -SIRSTLVTAVSIPLSVVLALIVLWTRDLSLNMLTLGALTIAIGRVVDDSIVVLENIK-- 431

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
            +        ++ I  ++ E  G     ++      LP+ + GG            G + 
Sbjct: 432 -RHLGYGEERKEAILTAVKEVAGAVTSATLTTVAVFLPIGLVGG----------MVGELF 480

Query: 808 AASS 811
            + S
Sbjct: 481 GSFS 484


>gi|237730527|ref|ZP_04561008.1| cation efflux system protein cusA [Citrobacter sp. 30_2]
 gi|226906066|gb|EEH91984.1| cation efflux system protein cusA [Citrobacter sp. 30_2]
          Length = 1047

 Score =  121 bits (302), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/683 (10%), Positives = 172/683 (25%), Gaps = 45/683 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVMMGALFLSVWGTWTIINT-PVDALPDLSDVQVI---------VKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDPYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       +    T                     E           ++    +  
Sbjct: 117 VQGKLPAGVSAEMGPDATGVGWIFEY-ALVDRSGKHDLAELRSLQDWFLKYELKTIPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q     DP +L Q   + A +       N    G    +           
Sbjct: 176 EVASVGGVVKQYQVVIDPMKLTQYGISLADVKSALDTSNQEAGGSSVEMAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   + +                   + +     G   +          P        
Sbjct: 236 YLQTLDDFNN------------------IVLKTGADGVPVYLRDVARVQIGPEMRRGIAE 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +    I         L++        +           +   
Sbjct: 278 LNGEGEVAGGVVILRSGKNAREVISAVKAKLDTLKSSLPEGVEVVTTYDRSQLIDRAIDN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI 
Sbjct: 338 LSYKLLEEFIVVALVCALFLWHLRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIR-----------EENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ I++ E               E   N + +  +          +F S +  
Sbjct: 398 IAVGAMVDAAIVMIENAHKRLEEWGHQHPNEKLDNATRWKVITDASVEVGPALFISLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   ++  + F AI ++  +M F IR K         
Sbjct: 458 TLSFIPIFTLEGQEGRLFGPLAFTKTYAMAGAAFLAIVVIPILMGFWIRGKIPAESSNPL 517

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                 I   + ++ +      + +++L  +  +  L   G  +      G  L + +  
Sbjct: 518 NRFLIRIYHPLLLKVLHWPKTTILVAVLSILTVVYPLNKVGGEFLPQINEGDLLYMPSTL 577

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
           P   +      + LQ  D              +       + +    +     ++     
Sbjct: 578 PGISAA--QAADMLQKTDKLIMTVPEVARVFGKTGKAETATDSAPLEMVETTIQLKPQDQ 635

Query: 648 LSTIQNTEIVGPKISRELIRKGI 670
                  + +  ++ + +   G+
Sbjct: 636 WRPGMTMDKIIAELDKTVRLPGL 658



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 97/289 (33%), Gaps = 16/289 (5%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I L +        +    + +     + + L+ V           +  ++     
Sbjct: 763  IARYPINLRYAQSYRDSPEALRNLPILTPMKQQITLADVADVTVVSGPSMLKTEDARPTS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K   +            +  + S +L  K +V + +
Sbjct: 823  WIYIDARDRDMVSVVNDLKKAIAEKVQLKPGTSVAFSGQFELLERASHKL--KLMVPMTL 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R ++  AL  IT++   +   + F    G   ++      + L G +  
Sbjct: 881  MIIFVLLYLAFR-RFGEALLIITSVPFALVGGIWFLYWMGFHMSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMR---------KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
              VV+   +R         +N + + T+    + +       +     T       +LP+
Sbjct: 940  FGVVMLMYLRHAIEAEPALENPQTF-TADKLDEALYHGAVLRVRPKAMTVAVIIAGLLPI 998

Query: 787  AV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
                  G  V+   A PM  G++ A   S+FI       ++  R +  +
Sbjct: 999  LWGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLMWLHRHRGQK 1047


>gi|167949709|ref|ZP_02536783.1| SecF protein [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 155

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 53/150 (35%), Positives = 87/150 (58%), Gaps = 1/150 (0%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R +L      D + Q+F   ++ LVRL  + G   A     +            + ++ 
Sbjct: 1   MRKSLVEGGFDDATVQHFGTSRDVLVRLAPRDGVESAVVSD-QAFAAMQRASEGKAELRR 59

Query: 654 TEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL 713
            E VGP++  EL   G + ++ + I +L+Y+ IRF++ FA+GA+  L+ D+  T+G F+L
Sbjct: 60  VEFVGPQVGDELTEDGGLAMLYALICILLYVGIRFEYRFAMGAVIALVHDVIVTIGIFSL 119

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           F +EF+L  +AAVL +IGYS+ND +VVYDR
Sbjct: 120 FQVEFDLPVLAAVLAVIGYSLNDTIVVYDR 149


>gi|56476638|ref|YP_158227.1| cation efflux system protein [Aromatoleum aromaticum EbN1]
 gi|56312681|emb|CAI07326.1| Cation efflux system protein [Aromatoleum aromaticum EbN1]
          Length = 1058

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 74/593 (12%), Positives = 158/593 (26%), Gaps = 44/593 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV+L ++    G L A+ N    + LD  P       I    D  G          
Sbjct: 11  KNVFLVLLATLFVLGGGLYAVKN----TPLDALPDLSDVQVIVF-TDFPG--------QA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          + +  +         + + + F D         +V  +L  V
Sbjct: 58  PQVVEDQVTYPLTTSMLAVPRAKVVRGFSMFGASYVYVIFEDGTDIYWARSRVLEYLSSV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       +    T            +        E           Q+  +    +
Sbjct: 118 AGRLPQGVSPQIGPDATGVGWVYQY---AVTGKNMSLAETRSLQDWYIRYQLTKAGGVSE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +     DP RL         +S      N    G +  +         +  
Sbjct: 175 VASVGGFVREYQVTVDPHRLATFGLALDDVSRVIRESNRDVGGRVVEMAEKEYMVRGRGY 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                            G              P        +
Sbjct: 235 LGGSDDI-------------------ANLALKSAGGTPVRVADIGRVELVPAERRGIAEL 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    I       A +  G       +           + +  
Sbjct: 276 NGEGEVASGIVMARFGQNALDVIANVKAKIAEIAPGLPEGVEIVPVYDRSTLIERAIANL 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T    + +V+ V  + +L+ +  LVA  ++ L +++    +  L     + S+ GI +
Sbjct: 336 KWTLLEESLIVVAVCVIFLLHVRSALVAIITLPLGILIAFIAMRALDLGSNIMSLGGIAI 395

Query: 423 GIGLAVDSNILVNERIREENRK------NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            IG  VD+ I++ E   +                ++          +F S +   ++ + 
Sbjct: 396 AIGAMVDAAIVMIENAHKRLEHLPAHATQAERAQTIIRACKEVGPALFFSLLIITVSFLP 455

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   ++  +   ++++V  +M+F +R + +             
Sbjct: 456 VFTLEGQEGRMFSPLAFTKTFAMAGAAILSVTLVPVLMLFFVRGRILPEAKNPVNRFLIW 515

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               I    MR +   +  + +    +I      G  +      G    + A 
Sbjct: 516 AYRPIIRGVMRHKVLTLVAAGVVMAVTIVPAREIGSEFMPTLNEGTLFYMPAA 568



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 59/158 (37%), Gaps = 6/158 (3%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S I + + +        AL AI TL L I           +  N+ ++  +   IG  V+
Sbjct: 343 SLIVVAVCVIFLLHVRSALVAIITLPLGILIAFIAMRALDLGSNIMSLGGIAIAIGAMVD 402

Query: 736 DKVVVYDRMR---KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
             +V+ +      +++  + T       I ++  E      ++ +   +S LP+    G 
Sbjct: 403 AAIVMIENAHKRLEHLPAHATQAERAQTIIRACKEVGPALFFSLLIITVSFLPVFTLEGQ 462

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               F   A    F +  AA  S+ +   ++LF    R
Sbjct: 463 EGRMFSPLAFTKTFAMAGAAILSVTLVPVLMLFFVRGR 500



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 63/176 (35%), Gaps = 14/176 (7%)

Query: 668  KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
            K ++ + +  I +L+Y+  R +    L  + ++   +   +      G + ++      +
Sbjct: 865  KVVLPLTLGLIFVLLYLNFR-RLTETLIVMLSVPFALVGGVWLMWWLGYQMSVAVAVGFI 923

Query: 728  TLIGYSVNDKVVVY-------DRMRKNMKLYTTS---ISFRDLIDKSINETLGRSVYTSM 777
             L G +    VV+          +R                + I +   E +   + T +
Sbjct: 924  ALAGVAAETGVVMLIYLDQAWKAIRAKRAAEGREASVADLYEAIMEGAVERVRPKMMTVV 983

Query: 778  AAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
            A    +LP+      G  V+   A PM  G++ +   ++ +   +   +  W+ + 
Sbjct: 984  AIMAGLLPIMWGTGTGSEVMSRIAAPMVGGMISSTVLTLGVIPALYALVKQWQLRR 1039


>gi|115526647|ref|YP_783558.1| CzcA family heavy metal efflux protein [Rhodopseudomonas palustris
           BisA53]
 gi|115520594|gb|ABJ08578.1| heavy metal efflux pump, CzcA family [Rhodopseudomonas palustris
           BisA53]
          Length = 1048

 Score =  120 bits (301), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 69/586 (11%), Positives = 163/586 (27%), Gaps = 37/586 (6%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             +L  +        A    L    LD  P       I          +          +
Sbjct: 11  KNLLLVLFAAGFAAAAGFYALTHLPLDAIPDLSDTQVI---------VYTDYAGQAPQVI 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +          + +  +         + + + F D         +V  FL G   +L
Sbjct: 62  EDQVTYPLSSAMLTVPRSKVVRGFSFFGVSFVYVIFEDGTDIYWARSRVLEFLNGAAQRL 121

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
                  +    T        +  + +  +S                +  +E   +    
Sbjct: 122 PAGVTPTIGPDATGVGWVYQYALLSKELNLSDTRALQD---WNLKFALAKAEGVAEVASV 178

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
              + Q     DP R+R L  T   M       N    G    +         +  ++  
Sbjct: 179 GGFVRQYNVVLDPQRMRSLGITMQMMRDAIRASNADVGGRTVELAEFEYVIRGKGYIKSI 238

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
            ++  I L  +            V++  DE           +                  
Sbjct: 239 NDLGEIVLKSSAGTPVKLRDVARVELGPDERRGLTELNGEGE------------------ 280

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   I   +  ++    I +       + +        +           +    K T 
Sbjct: 281 -VASGIVVQRFGVNARDVIASVKQRFVEIASSLPKSLEIVTVYDRSKLIDAAIETLKSTL 339

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                +V +V  + +L+ +  LVA   + + +++    +  LG    + S+ GI + IG 
Sbjct: 340 VEECIIVALVCIVFLLHVRSALVAIIMLPVGILMAFGAMKALGIGANIMSLGGIAIAIGA 399

Query: 427 AVDSNILVNERIREENR---KNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---F 480
            +D+ I++ E   +       ++     L    +     +F S +   ++ + +F     
Sbjct: 400 MIDAAIVMIENAHKHLERAAPDRPRVDVLIEAAAEVGPALFFSLLIITVSFLPIFTLESQ 459

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
            G      A T   ++  +   ++++V A+M+  +R + +             +   +  
Sbjct: 460 EGRLFSPLAFTKTFAMAAAALLSVTLVPALMVIFVRGRIVPEHRNPLNRFLIWLYQPLIK 519

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +RA+   + I++     ++      G  +      G  L +   
Sbjct: 520 LVLRAKLLVILIALAVLAVTVWPARQLGTEFMPALNEGTLLYMPTT 565



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 64/158 (40%), Gaps = 7/158 (4%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +I++ + ++  + +R     AL AI  L + I    G     GI  N+ ++  +   IG 
Sbjct: 344 IIVALVCIVFLLHVR----SALVAIIMLPVGILMAFGAMKALGIGANIMSLGGIAIAIGA 399

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            ++  +V+ +   K+++         D++ ++  E      ++ +   +S LP+      
Sbjct: 400 MIDAAIVMIENAHKHLERAAPDRPRVDVLIEAAAEVGPALFFSLLIITVSFLPIFTLESQ 459

Query: 793 VIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               F   A    F +  AA  S+ +   +++     R
Sbjct: 460 EGRLFSPLAFTKTFAMAAAALLSVTLVPALMVIFVRGR 497



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 72/243 (29%), Gaps = 14/243 (5%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
             + S+                 V +     D      V +  +     +   S    T  
Sbjct: 790  EVASVTPSRGPSSIRTENGQLAVYIYVDIRDRDIGGYVADAQRAVQASVAFPSGSYLTWS 849

Query: 657  VGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALFG 715
               +       +  + V ++   + + +++ F+    +L  + +L   +   +      G
Sbjct: 850  GQYEYLERAAARLKIVVPVTLAIIFLLLYLNFRNITDSLIVMLSLPFALVGGIWLMWALG 909

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVY----------DRMRKNMKLYTTSISFRDLIDKSI 765
               ++  V   + L G +    VV+              R       T       I    
Sbjct: 910  FNLSVAVVVGFIALAGVAAETGVVMLIYLDHALAEIAARRAAEGRAVTREDLYQAIMSGA 969

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
             E +   + T +A    +LP+      G  ++   A+PM  G+V +   ++ +   I   
Sbjct: 970  VERVRPKMMTVVAIIAGLLPILWSTGAGSEIMQRIAVPMIGGMVSSTLLTLIVIPAIYGL 1029

Query: 823  IYD 825
            +  
Sbjct: 1030 VKR 1032


>gi|95928823|ref|ZP_01311569.1| acriflavin resistance protein [Desulfuromonas acetoxidans DSM 684]
 gi|95135168|gb|EAT16821.1| acriflavin resistance protein [Desulfuromonas acetoxidans DSM 684]
          Length = 1078

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 64/661 (9%), Positives = 187/661 (28%), Gaps = 36/661 (5%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++   ++ +++ ++   G+          + ++  P       +         + +    
Sbjct: 9   LKQKVFINVVFVILMVSGVYSLF-----NTPVENLPPVAIGKVVI--------TTIHYGA 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              D     +    +E    L+       +  +  + I + F D     ++ D++ L + 
Sbjct: 56  SARDV-EQLVTREIEEAIDGLENVEYVQSTSMRNVSSILIKFIDDTDYRHLYDELRLRVL 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L       +      ++   V+  N I  + + ++    E   +    +   +  
Sbjct: 115 NVREQLPDAVDDPIFTYLDSQDWKPVIIANLIGDLSNTSLTLLAE---ELKSDLRKLDGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +         +     DP RLR    + A+++      N       +  +         
Sbjct: 172 QEVALEGDYHQEFQVHIDPQRLRDTGISFAEVAKAIADANVKIPSGRYRQQGHNT----- 226

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                        L      FD +     V +  D  G                      
Sbjct: 227 -------------LLDTGQVFDRQQQVLDVAVRRDGDGNFIRVRDLATLASLSHREPDLI 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +      +     +   +     E                 +  V   +   ++    
Sbjct: 274 STVNGQSTVKLKVKKQDAANAITIAERVKQEVERFNQLHQRDGVTTVLTNDSTIEIDDSI 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
              G   ++  +++ ++  I L  +  ++    I  + ++T+ ++ L G ++   S+   
Sbjct: 334 RTLGGNMVLGMILVTLVLWITLGFRNAMLTAIGIPFSFLVTIIIVKLTGESINTISLFSF 393

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           VL  G+ VD  +++ E +       ++   ++  G S  +  +  S +T + A   +   
Sbjct: 394 VLVSGIIVDDAVIIIENVYRHLYMGKTRRTAIVDGVSEVFLPVISSAMTTICAFAPMLIM 453

Query: 481 GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAI 540
             G+   F   +  ++  ++F ++     ++   I     + +  N              
Sbjct: 454 -TGSTGDFFSVIPKAVSFALFASLVESLFILPVHILDYGPRQMSANLHPEGDYHHLQEGP 512

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLES 600
                + +   ++ L +   + +               + +  +           S L  
Sbjct: 513 FAPLWKIYRGLLNTLLNHKWLTMAGITTAFMVTMVMMIVSVTGIMPLIKVKFYQDSYLRY 572

Query: 601 LQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPK 660
               D+         + ++R   +   S+   + L        +      I   +  G  
Sbjct: 573 HVTVDMPTGTSVEGTDAVIRDLSRYLVSLGPGQTLSTSGSAGLKEDQDYQIHRAQHYGQV 632

Query: 661 I 661
           +
Sbjct: 633 V 633



 Score = 59.7 bits (142), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 86/262 (32%), Gaps = 16/262 (6%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             V     V+ S     +  L   D   +     +           D    +++     + 
Sbjct: 803  QVATIPIVEHSEQPILIGDLANLDYRQEPDARTRYNGKPTLTITADIRTGSQLSASRVQV 862

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKG------IVGVIISAIAMLIYIWIRF-KWYFAL 694
            + +    S       V      E               +I+ +A+ + +  +F  +   +
Sbjct: 863  LAQRYFDSINDRYPGVSIAFGGEFESTARAYTSLAAAFVIAVLAIYLILASQFNDYIQPI 922

Query: 695  GAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
              ++ +       +         F + +  AV+ L G +VND +++ D M K        
Sbjct: 923  IILSAIAFAFIGVVLGMFFTRSVFTIGSFMAVIGLAGVAVNDSLILIDFMNKER---ERG 979

Query: 755  ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS----VIGSFAIPMAFGIVVAAS 810
            +  R+ +    +  +   + T++   + +LPMA+ G           A   A G+  A +
Sbjct: 980  LGLREAVINGCSARMRPVLITTLTTMLGMLPMAI-GIPHKSITWAPMATAFATGLASATT 1038

Query: 811  SSIFIAAPILLFIYDWRAKNAR 832
             ++ +  P+   + +   +  R
Sbjct: 1039 LALLLI-PVEYELTENAKERVR 1059



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/222 (17%), Positives = 84/222 (37%), Gaps = 12/222 (5%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
                V+L+ +  D+     + E VK+++     L        V    S   I   I  +
Sbjct: 277 NGQSTVKLKVKKQDAANAITIAERVKQEVERFNQLHQRDGVTTVLTNDSTIEIDDSIRTL 336

Query: 674 ----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
               ++  I + + +WI   +  A+     +      T+    L G   N  ++ + + +
Sbjct: 337 GGNMVLGMILVTLVLWITLGFRNAMLTAIGIPFSFLVTIIIVKLTGESINTISLFSFVLV 396

Query: 730 IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI-SVLPMAV 788
            G  V+D V++ + +    +      + R  I   ++E     + ++M   I +  PM +
Sbjct: 397 SGIIVDDAVIIIENV---YRHLYMGKTRRTAIVDGVSEVFLPVISSAMTT-ICAFAPMLI 452

Query: 789 WGGSVIGSFAI---PMAFGIVVAASSSIFIAAPILLFIYDWR 827
             GS    F++    ++F +  +   S+FI    +L     +
Sbjct: 453 MTGSTGDFFSVIPKAVSFALFASLVESLFILPVHILDYGPRQ 494


>gi|324329384|gb|ADY24644.1| transporter, AcrB/AcrD/AcrF family protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 1038

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 195/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       +      K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASGQGSQTAGTGAQMPQMNPAAMNGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENR---KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANGYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|295700962|ref|YP_003608855.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
 gi|295440175|gb|ADG19344.1| acriflavin resistance protein [Burkholderia sp. CCGE1002]
          Length = 1071

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 69/638 (10%), Positives = 161/638 (25%), Gaps = 45/638 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           ++     ++L  ++  +G     P  + ++  D FP+                  +V   
Sbjct: 8   LKRPYTFIVLAVLLFIVG-----PLAIMRTPTDIFPNINIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D  +     Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMAHRITSNYERALTSDVDDIEHIESQSLNGVSVVKVFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + ++    +   +                 Q+   
Sbjct: 112 NAASILRILPPGTLPPNIITYNASTVPVLQLGLSSTTLPEQT--LYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + DP  L+        +       N    G    +     + 
Sbjct: 170 QGAAVPLPYGGKIRQIMVQLDPKALQAKGLAPIDVVNAVNAQNLILPGGTAKIGSREYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     D+    +     +     ++    A  
Sbjct: 230 EMNGSTQTVAAL--------------------NDLPIKTVSGGLVYVRDVAHVIDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +                    S    I     +   + AG                   
Sbjct: 270 TNIVRADGKRAALLTVEKTGSASTLTIIGQVKAMLPKIAAGLPHALKIAPLGDQSVFVKS 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           + +       I AGL   ++ + +   +  L+   +I L V+ +L  L+ LG T+ + ++
Sbjct: 330 AITGVVREALIAAGLTAAMILLFLGSWRATLIIAVTIPLAVLTSLIALAALGETINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I     +   +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLERGAPLHDAILNGSGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAM-MIFIIRYKKMKSIDINPLSRFFL 533
           F   G         A  +  ++  S F + +++  + M  +    +  +           
Sbjct: 450 FLLSGVARYLFVPLAEAVVFAMCASYFFSRTLIPTLAMYLLRARSRNTAPARGIGGALTR 509

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSV 593
                  +F   R     +           +                 G      VD   
Sbjct: 510 FQAGFEKRFEALRNRYRTVLQAAIAKRWRFVALWLALCLGSLGLLPFTGRDFFPAVDTGE 569

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
           +R +L +     I       ++         P    A 
Sbjct: 570 IRLHLRAPTGTRIEETARITDEVEAKIRSVIPPAEQAA 607



 Score = 68.2 bits (164), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/194 (15%), Positives = 75/194 (38%), Gaps = 7/194 (3%)

Query: 630 AQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK 689
               +L  +   +   + ++ + +  +        ++R+ ++   ++A  +L+++     
Sbjct: 299 QVKAMLPKIAAGLPHALKIAPLGDQSVFVKSAITGVVREALIAAGLTAAMILLFLG---S 355

Query: 690 WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
           W   L    T+ L +  +L   A  G   N+  +  +   +G  V+D  V  + +     
Sbjct: 356 WRATLIIAVTIPLAVLTSLIALAALGETINIMTLGGLALAVGILVDDATVAIENI---TH 412

Query: 750 LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAA 809
                    D I     E    +  ++++  I  +PM +  G     F +P+A  +V A 
Sbjct: 413 HLERGAPLHDAILNGSGEIAVPTFVSTLSICIVFVPMFLLSGVARYLF-VPLAEAVVFAM 471

Query: 810 SSSIFIAAPILLFI 823
            +S F +  ++  +
Sbjct: 472 CASYFFSRTLIPTL 485



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 61/163 (37%), Gaps = 7/163 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ +   + + + + F  W   L  ++ L   +        +     ++ A+   +  +G
Sbjct: 891  LVFAIALVYLLMVVNFQSWLDPLIIVSGLPGSLAGIAWMLFVTQTTLSVPALTGTILCMG 950

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+   L          +D   N      + T++A  I +LPMA+   
Sbjct: 951  IATANSILVINTARE--SLAAGMAPLAAALDAGFNR-FRPVLMTALAMLIGMLPMALGLG 1007

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
             GG         +  G+ +   S++     I   ++ W AK  
Sbjct: 1008 DGGEQNAPLGRAVIGGLAIGTLSTLVFVPVIFGMVHGWLAKRR 1050



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 64/534 (11%), Positives = 156/534 (29%), Gaps = 35/534 (6%)

Query: 5    PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
             W  +   +  C+G L  LP     +  D FP+      I L L    G+ +       D
Sbjct: 536  RWRFVALWLALCLGSLGLLPF----TGRDFFPAVD-TGEIRLHLRAPTGTRIEETARITD 590

Query: 65   FVNGFLQMYSDELRSF--LKKEGIGVFSMR----------QIQNKITLSFADSRFKENIA 112
             V   ++           L   G+ V  +              + I ++ A        A
Sbjct: 591  EVEAKIRSVIPPAEQAAVLDNIGVPVSGINLTYDSSDPIGPEDSDILVTLAPKHKP--TA 648

Query: 113  DKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRID 172
              V      +++         L      + ++  L      Q++ + + Q  ++  + +D
Sbjct: 649  QYVAKLRNVLDTAFPGVTFAFLPADIVSQILNFGLPAPIDVQIVGNKLAQDRQVANRLLD 708

Query: 173  QIGISES-TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
            Q+         R+        +    D ++  Q   T   ++ + ++  +          
Sbjct: 709  QMRGVRGLVDARIQQPGDEPTINVNVDRTKAMQAGLTQHDVAQNLLIALSGSSQTSPNFW 768

Query: 232  FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
                S+G  Y +  +V            +         V ++      +   ++      
Sbjct: 769  LDP-SNGVSYPLIAEV---------PQYDIHSLQTLANVPLTTPSASVKPQNQLGMLGTV 818

Query: 292  KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
               A            +     S + +  G    +   ++ A          + +  +  
Sbjct: 819  SRSAQQAVVSHYNVQPVLDIFASTQGRDLGGVASDVNRLVDAARAQLPPGSSIVVRGQVQ 878

Query: 352  VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
                    S           LV +++ +        L+    +  ++     +L +   T
Sbjct: 879  SMNTS--FSGLAAGLVFAIALVYLLMVVNFQSWLDPLIIVSGLPGSLAGIAWMLFVTQTT 936

Query: 412  LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            L++P++ G +L +G+A  ++ILV    RE      +   +        +  +  + +  L
Sbjct: 937  LSVPALTGTILCMGIATANSILVINTARESLAAGMAPLAAALDAGFNRFRPVLMTALAML 996

Query: 472  IATVVLFFF---GGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
            I  + +      GG         +   + I   + +  V  +   +  +   + 
Sbjct: 997  IGMLPMALGLGDGGEQNAPLGRAVIGGLAIGTLSTLVFVPVIFGMVHGWLAKRR 1050


>gi|222098909|ref|YP_002532967.1| transporter resistance protein [Bacillus cereus Q1]
 gi|221242968|gb|ACM15678.1| conserved transporter; possible acriflavin resistance protein
           [Bacillus cereus Q1]
          Length = 1038

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 195/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       +      K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASGQGSQTAGAGAQMPQMNPAAMNGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENR---KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANGYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 67.4 bits (162), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGSEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSTKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|160889212|ref|ZP_02070215.1| hypothetical protein BACUNI_01633 [Bacteroides uniformis ATCC 8492]
 gi|156861219|gb|EDO54650.1| hypothetical protein BACUNI_01633 [Bacteroides uniformis ATCC 8492]
          Length = 1040

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 76/620 (12%), Positives = 180/620 (29%), Gaps = 35/620 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWDTDIYLARQIVSEKLAVV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L  +  K  L   +     +++     D      ++           ++  +    Q
Sbjct: 118 SESLPANVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +   + DP R+R    T +++        N          +  +      L
Sbjct: 176 VAVLGGDIKEYQVQLDPERMRHYGVTLSEVMN-ITREMNLNANGGVLYEYGNEYIVRGVL 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             DKV+               +  K VV  +          ++    IG  L  +     
Sbjct: 235 STDKVD---------------QIAKAVVRSNGVSGAPILLEDIADVQIGAKLPKLGTASE 279

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +    A  +   T +    L  + +     +K++    R       S    
Sbjct: 280 RGKHAVLLTVTKQPATSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNV 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +       V+IVLF+ +   +  +++  ++ L++I ++  L  +G T+   S+ G+ +
Sbjct: 340 QKSLLEGGIFVVIVLFLFLANVRTTVISLVTLPLSLIASILALHYMGFTINTMSLGGMAI 399

Query: 423 GIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +   +N+         +   +          I +S +  +++ 
Sbjct: 400 AIGSLVDDAIVDVENVYKRLHENRLKPAGEQLPILEVVFNASKEVRMPILNSTLIIIVSF 459

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI------DI 525
           V LFF     G  +    I   +++  S   A+++   +  +++  +K K          
Sbjct: 460 VPLFFLSGMEGRMLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKTKKQNNENSDSA 519

Query: 526 NPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +       +    GI  LF +   C             +G   + + +
Sbjct: 520 VARKMKQWYGSALTFVLGHKKGVLGGIIGLFVVALGCFFTLGRSFLPPFNEGSFTINISS 579

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              + L          +   +S            R +            +E   +     
Sbjct: 580 LPGISLEESDKMGHRAEELLLSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRS 639

Query: 646 VPLSTIQNTEIVGPKISREL 665
                 +  E +G  +   +
Sbjct: 640 RSELVAEVREKLGTIVGANV 659



 Score = 76.7 bits (186), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/219 (11%), Positives = 75/219 (34%), Gaps = 11/219 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +  + ++ K    ++   + I             + +  + G I   I +
Sbjct: 295 TSTLELTDKLEASLQDLQKNLPADVKVSTDIFRQSRFIESSIGNVQKSLLEGGIFVVIVL 354

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++         + ++ TL L +  ++      G   N  ++  +   IG  V+D +V 
Sbjct: 355 FLFLA---NVRTTVISLVTLPLSLIASILALHYMGFTINTMSLGGMAIAIGSLVDDAIVD 411

Query: 740 ---VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
              VY R+ +N +K     +   +++  +  E     + +++   +S +P+    G    
Sbjct: 412 VENVYKRLHENRLKPAGEQLPILEVVFNASKEVRMPILNSTLIIIVSFVPLFFLSGMEGR 471

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
           ++    I     +  +   ++ +   +  ++        
Sbjct: 472 MLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKEKTKK 510



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/223 (12%), Positives = 82/223 (36%), Gaps = 11/223 (4%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N   ++      +    R +    +   +             G +   E      + +  
Sbjct: 816  NVKRKIVISANVADRDLRSVVNDIQAQVDAQIKLPEGYHIEYGGQFESEQAASRTLALTS 875

Query: 676  SAIAMLIYIWIRFKWYFAL--GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
                ++I++ +  ++  ++   AI  + L +    G FAL     E ++ A+   ++L G
Sbjct: 876  FMSIVVIFLLLYHEFR-SVKESAIILINLPLALIGGVFALLITTGEVSIPAIIGFISLFG 934

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + +++      N           D + +   + L   + T++++ ++++P+A+ G 
Sbjct: 935  IATRNGMLLISHY--NHLQQEEGYGVYDSVIRGSLDRLNPILMTALSSALALIPLALSGD 992

Query: 792  ----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
                 +    A  +  G++ +   + FI   + L ++  +   
Sbjct: 993  LPGNEIQSPMAKVILGGLLTSTFLNGFIIPIVYLMMHHNQQPK 1035


>gi|115352147|ref|YP_773986.1| acriflavin resistance protein [Burkholderia ambifaria AMMD]
 gi|115282135|gb|ABI87652.1| acriflavin resistance protein [Burkholderia ambifaria AMMD]
          Length = 1072

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 67/515 (13%), Positives = 146/515 (28%), Gaps = 38/515 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                ++L  +I   G L AL     ++  D FP       IS+  +  G       +  
Sbjct: 11  RPYTFIVLALLILIAGPLAAL-----RTPTDIFPDIRIP-VISVVWNYAG-------LQP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            D     +  Y   L + +           +    + + F  S        +VT   Q V
Sbjct: 58  ADMAGRIVTYYERTLGTTVNDVAHIESQSFRSYGIVKIFFQPSVDIRTATAQVTSISQTV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             ++        ++      + ++      D +     +           Q+        
Sbjct: 118 LKQMPPGTTPPQILNYNASTVPVLQLALTSDTLNEQ--QLGDYATNVIRPQLLSVAGVAI 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + Q+  + DP  L+    +   ++      N         +     +      
Sbjct: 176 PSPYGGKVRQVQIDLDPQALQAKGLSAQDVATALAQQNQIIPAGTQKIGRFEYNIRLNDS 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
                +++                     +    +     F     ++        +   
Sbjct: 236 PLTIDQLNA--------------------LPIRTVNGAVIFMRDVAHVRDGFPPQGNIVR 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
           +                S    I         + A   P    +V         G+ S  
Sbjct: 276 VDGRRAVLMSVLKSGSASTLDIIAGVKAQLPRIEATLPPSLRLVVMGDQSVFVKGAVSGV 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                I A L   ++ + +   +  L+   SI L V+  +A L+  G TL + ++ G+ L
Sbjct: 336 AREGLIAAALTSAMILLFLGSWRSTLIIAASIPLAVLAAIAALAAAGETLNVMTLGGLAL 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGG 482
            +G+ VD   +  E +     + + V  ++  G S+  +  F S +   I  V +    G
Sbjct: 396 AVGILVDDATVTIENVNWHLEQGKDVRSAILDGASQIVAPAFVSLLCICIVFVPMLLLDG 455

Query: 483 G---AVRGFAITMGLSILISMFTAISIVRAMMIFI 514
                    A  +  +++ S   + + V  M  ++
Sbjct: 456 VARFLFVPMAEAVIFAMIASFVLSRTFVPMMARYL 490



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 55/153 (35%), Gaps = 7/153 (4%)

Query: 680  MLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKV 738
            + + I + F  W  A   ++ L   +   +    +     ++ A+   +  +G +  + +
Sbjct: 906  IYLLIVVNFHSWRDAFVIVSALPAALAGIVWMLFVTRTPLSVPALTGAILCMGVATANSI 965

Query: 739  VVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIG 795
            +V    R+ +     +        ++        + T++A  I + PMA+    GG    
Sbjct: 966  LVVTFARERLA---HTADATVAALEAGFTRFRPVMMTALAMIIGMAPMALGLGDGGEQNA 1022

Query: 796  SFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
                 +  G++ A  +++     +   ++    
Sbjct: 1023 PLGRAVIGGLLCATVATLVFVPVVFSLVHRRDR 1055



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/199 (13%), Positives = 74/199 (37%), Gaps = 7/199 (3%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              L  ++  +   + L  + +  +        + R+G++   +++  +L+++     W 
Sbjct: 302 KAQLPRIEATLPPSLRLVVMGDQSVFVKGAVSGVAREGLIAAALTSAMILLFLG---SWR 358

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L    ++ L +   +   A  G   N+  +  +   +G  V+D  V  + +       
Sbjct: 359 STLIIAASIPLAVLAAIAALAAAGETLNVMTLGGLALAVGILVDDATVTIENVN---WHL 415

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
                 R  I    ++ +  +  + +   I  +PM +  G     F +PMA  ++ A  +
Sbjct: 416 EQGKDVRSAILDGASQIVAPAFVSLLCICIVFVPMLLLDGVARFLF-VPMAEAVIFAMIA 474

Query: 812 SIFIAAPILLFIYDWRAKN 830
           S  ++   +  +  +  + 
Sbjct: 475 SFVLSRTFVPMMARYLLRP 493


>gi|255036917|ref|YP_003087538.1| efflux transporter, RND family, MFP subunit [Dyadobacter fermentans
           DSM 18053]
 gi|254949673|gb|ACT94373.1| efflux transporter, RND family, MFP subunit [Dyadobacter fermentans
           DSM 18053]
          Length = 1460

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 49/448 (10%), Positives = 120/448 (26%), Gaps = 25/448 (5%)

Query: 81  LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTE 140
           +           Q  + I LSF         A +V   +    + +        +V    
Sbjct: 75  VSGIRDVDVKTIQGLSLIKLSFYPGTDMAQAAAEVANNVSRAKAYMPEGTVPPQVVRFDA 134

Query: 141 KEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPS 200
             + I               E       +        E              +    DP 
Sbjct: 135 SSVPIGQMVFESAS--RSLNEIQDFASSRVRPMFSRIEGVSSPPPFGGNQRTIVVRVDPE 192

Query: 201 RLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATAN 260
           R+R    T  ++    +  N         +                    G        N
Sbjct: 193 RIRSYHLTPEEVIKSIIANNQPSPAGNIRM--------------------GDKTLMTPVN 232

Query: 261 FDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQIS 320
              K  +  ++I          F      +     V +   ++            K+  S
Sbjct: 233 SLIKKPEDFLNIPIRVGAGPTVFIRDVGVVEDGADVTVSYALINGRRAVYIPVVKKSDAS 292

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMI 380
               +         LR           E         S         + A L  +++ + 
Sbjct: 293 TLDVVNNIRAALPQLRNAVPEDVKISYEFDQSVYVTNSLKSLITEGILGALLTGLMVLLF 352

Query: 381 VLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIRE 440
           +   +  ++   +I ++++  + L++L G T+ + +++G+ L IG+ VD   +  E I +
Sbjct: 353 LRDWRSVIIVIVTIPISILSAVILMNLFGQTINIMTLSGLALAIGVLVDQATVTIENIHQ 412

Query: 441 ENRKNQSVFCSLDMGFSRAYST---IFDSNITALIATVVLFFFGGGAVRGFAITMGLSIL 497
                +    ++             I  + +     + V+           ++ +G +++
Sbjct: 413 HQEMGKPKEQAIWDACKEIAFPEFLILLAILAVFAPSFVMSGIPRSMFLPLSLAVGFAMI 472

Query: 498 ISMFTAISIVRAMMIFIIRYKKMKSIDI 525
            S   + ++V  +  ++++         
Sbjct: 473 ASFLLSQTLVPVLANWLLKDHPHHEAPT 500



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 91/283 (32%), Gaps = 7/283 (2%)

Query: 548  WGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDIS 607
                 ++                          +G +  +    + + +++ +       
Sbjct: 769  RFTDKNLWLDDAKGLAYQVQVQIPEYQMTSVEDIGTIPLKTGVSNPLLADVATFSEKTAP 828

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
             +      N LV +               + K           +         +  E + 
Sbjct: 829  GEYDRAGPNRLVTVTANIHQKDLGAATTAVQKAIKNAGESPRGVIVELKGQTDLLTETLS 888

Query: 668  KGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAV 726
                G++I+ + M + +   +  +  +L  ++T+   +  ++G   L G   NL +   +
Sbjct: 889  SLQTGLLIAVVIMFLLLAATYQSFKLSLVVLSTIPAVVVGSIGLLLLTGATLNLQSYMGL 948

Query: 727  LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
            +  +G SV + +++     +N++L          +  +    +   + TS+A    ++PM
Sbjct: 949  IMSVGVSVANAILMVTNA-ENLRLQL--QDAHKAVTLAAGSRIRPILMTSIAMIAGMVPM 1005

Query: 787  AVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            A     GG  I      +  G++ +  +S+ I   +   +   
Sbjct: 1006 ASGMGEGGDQIAPLGQAVIGGLIASTLASLLILPAVFTLVQRK 1048



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/214 (13%), Positives = 68/214 (31%), Gaps = 4/214 (1%)

Query: 617 FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             V  +           +   + +    +     I         ++  L      G++ +
Sbjct: 283 IPVVKKSDASTLDVVNNIRAALPQLRNAVPEDVKISYEFDQSVYVTNSLKSLITEGILGA 342

Query: 677 AIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVND 736
            +  L+ +     W   +  I T+ + I   +    LFG   N+  ++ +   IG  V+ 
Sbjct: 343 LLTGLMVLLFLRDWRSVIIVIVTIPISILSAVILMNLFGQTINIMTLSGLALAIGVLVDQ 402

Query: 737 KVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGS 796
             V  + +    +           I  +  E         +A      P  V  G     
Sbjct: 403 ATVTIENIH---QHQEMGKPKEQAIWDACKEIAFPEFLILLAILAVFAPSFVMSGIPRSM 459

Query: 797 FAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           F +P++  +  A  +S  ++  ++  + +W  K+
Sbjct: 460 F-LPLSLAVGFAMIASFLLSQTLVPVLANWLLKD 492


>gi|217962926|ref|YP_002341504.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus AH187]
 gi|229142180|ref|ZP_04270705.1| Swarming motility protein swrC [Bacillus cereus BDRD-ST26]
 gi|217064350|gb|ACJ78600.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus AH187]
 gi|228641469|gb|EEK97775.1| Swarming motility protein swrC [Bacillus cereus BDRD-ST26]
          Length = 1038

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 195/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       +      K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASGQGSQTAGAGAQMPQMNPAAMNGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREENR---KNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANGYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSGEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGSEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|159528137|ref|YP_001542700.1| HelA protein [Fluoribacter dumoffii]
 gi|159157982|dbj|BAF92671.1| HelA protein [Fluoribacter dumoffii]
          Length = 1041

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 74/601 (12%), Positives = 162/601 (26%), Gaps = 66/601 (10%)

Query: 5   PWLVILYSMICC-IGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            W ++L+++I    G+         +  +D  P                 +++ ++++  
Sbjct: 13  RWFILLFTVIIASFGVY-----NYQKLPIDAVPDI---------------TNVQVQINTA 52

Query: 64  D------FVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                   V   +    +   S L          R   +++T+ F D          +  
Sbjct: 53  ASGYSPFEVEQRITFPIELALSGLPNLDYTRSLSRYGLSQVTVVFKDGTNIYFARQLINE 112

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLS----QNNIDQVISHAIEQSMEIIRQRIDQ 173
            LQ V  KL  + +  L   +T      + +     N       +              Q
Sbjct: 113 RLQEVKDKLPPESETTLGPISTGLGEIFMYTVTNKPNVPKSQRYNPTGLRTIQDWIIKPQ 172

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   E   +         Q      PS+L +   +   +       N +           
Sbjct: 173 LRNVEGVAEVNTIGGYAKQFHITPVPSKLVRYNLSLNDVLEALQRNNANVGAGYIERNGE 232

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           ++       V+D  +I  I +                                   +   
Sbjct: 233 QNLIRVPGQVKDIPDIENIVIANFE--------------------GTPIRMRDVAKVVFG 272

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +           +           +     E        +          ++      
Sbjct: 273 KELRTGAATENGQEVVLGTVFMLMGENSRTVSERVAEKMKEINKSLPEGVEAVIVYNRTL 332

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +  K      A LV I+LF+ +   +  L+    I L++++T+  +     +  
Sbjct: 333 LVNATINTVKNNLLEGALLVCIILFLFLGNIRAALITAMVIPLSMLMTITGMVTNKISAN 392

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR-----------AYST 462
           L S+    L  GL VD  +++ E   +   + Q     L     R              +
Sbjct: 393 LMSLGA--LDFGLIVDGAVIIVENCIKHLGEKQHNAQRLLTLEERLKVISYATTEVIRPS 450

Query: 463 IFDSNITALIATVVLFFFGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           IF   I  ++   +L   G         A T+ ++++ SM  A++ V A +   +R +  
Sbjct: 451 IFGVFIITVVYLPILTLTGVEGKMFLPMAETVIIALMSSMLFALTFVPAAIAIFLRGRVQ 510

Query: 521 KSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQ 580
           +  +             +   F   R       +L  +         G       +G I 
Sbjct: 511 EKENWLVHYLSIGYARVLRRSFHARRSVIGAAVVLVVLSLFIASRMGGEFIPSLDEGDIA 570

Query: 581 L 581
           +
Sbjct: 571 M 571



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 87/247 (35%), Gaps = 12/247 (4%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             + LS V   + S     IS +           ++     +      L + +        
Sbjct: 801  FIPLSEVAKMVRSEGPNQISREMGKRRVVVSANVRGSDLSTFVNNAKLRIEQNVKIPSGY 860

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
                          S+ L     + V ++ + + + +++ F        + T I  +  T
Sbjct: 861  WIDWGGQFEQLQSASQRLQ----IVVPVTLLGIFLLLFMSFGRARDALLVFTGI-PLALT 915

Query: 708  LGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
             G FAL+   I  +++A    + L G +V + +V+   +  N          +D + +  
Sbjct: 916  GGVFALWIRDIPLSISAGVGFIALSGVAVLNGLVMITFI--NKLHEQQKFYLKDAVLQGS 973

Query: 766  NETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
               L   + T++ A +  +PMA+    G  V    A  +  GI+ +   ++ +   +   
Sbjct: 974  LARLRPVLMTALVASLGFVPMALATGTGSEVQRPLATVVIGGIISSTFLTLLVLPGLYYV 1033

Query: 823  IYDWRAK 829
             ++ R K
Sbjct: 1034 FHERRKK 1040


>gi|146291372|ref|YP_001181796.1| CzcA family heavy metal efflux protein [Shewanella putrefaciens
           CN-32]
 gi|145563062|gb|ABP73997.1| heavy metal efflux pump, CzcA family [Shewanella putrefaciens
           CN-32]
          Length = 1048

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/600 (10%), Positives = 145/600 (24%), Gaps = 45/600 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVMMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDLYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       +    T                     E           ++    +  
Sbjct: 117 VQGKLPAGVSSEIGPDATGVGWIFEY-ALVDRSGKHDLSELRSLQDWFLKFELKTIPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q   + DP +L Q   +  ++       N    G    +           
Sbjct: 176 EVASVGGVVKQYQIQLDPVKLTQYGISLPEVKQALSSSNQEAGGSSVEIAESEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +          +      I     +     
Sbjct: 236 YL-------------------QTIDDFKNIVLKTGENGVPVYLRDVARIQMGPEMRRGIA 276

Query: 302 VLTAPV-INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L     +   +   ++  +    I         L+A        +           +  
Sbjct: 277 ELNGQGEVAGGVVILRSGKNAREVITAVRDKLDTLKASLPEGVEIVTTYDRSQLIDRAID 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI
Sbjct: 337 NLSYKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREE-----------NRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            + +G  VD+ I++ E   +               N + +  +          +F S + 
Sbjct: 397 AIAVGAMVDAAIVMIENAHKRLEEWDHQHPGEQIDNATRWKVITDASVEVGPALFISLLI 456

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             ++ + +F      G      A T   S+  +   AI ++  +M F IR K        
Sbjct: 457 ITLSFIPIFTLEGQEGRLFGPLAFTKTYSMAGAAILAIIVIPILMGFWIRGKIPAETSNP 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      + ++ +      + ++ L     I  L   G  +      G  L + + 
Sbjct: 517 LNRLLIKAYHPLLLRVLHWPKTTLLVAALSIFTVIWPLSQVGGEFLPKINEGDLLYMPST 576



 Score = 55.1 bits (130), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 90/287 (31%), Gaps = 14/287 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I + +             + +     + + L  V           +  +N     
Sbjct: 763  VARYPINIRYPQDYRNSPQALREMPILTPMKQQITLGDVADIKVVSGPTMLKTENARPAS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V  + +   SV       + +K                +    +++L  K +V + +
Sbjct: 823  WIYVDARGRDMVSVVNDIKTAISEKVKLRPGTSVAFSGQFELLEHANKKL--KLMVPMTV 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  + +L   +   + F    G   ++      + L G +  
Sbjct: 881  MIIFILLYLAFR-RVDEALLILMSLPFALVGGIWFLYWQGFHMSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYT--------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++ +         T     + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAHPELSRKETFTPEGLDEALYHGAVLRVRPKAMTVAVIVAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 G  V+   A PM  G++ A   S+FI       I+  R K +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLIWLRRHKKS 1046


>gi|313675816|ref|YP_004053812.1| heavy metal efflux pump, czca family [Marivirga tractuosa DSM 4126]
 gi|312942514|gb|ADR21704.1| heavy metal efflux pump, CzcA family [Marivirga tractuosa DSM 4126]
          Length = 1029

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 71/625 (11%), Positives = 173/625 (27%), Gaps = 38/625 (6%)

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
           + V   +    +   +          S     + + + F            V+  +  V 
Sbjct: 59  EEVEKLVTYQLETAMNGSPNVRRIRSSSAAGISIVWVEFEWGTDIYRARQIVSERIPMVR 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L        +   +     ++L     D +    +E           ++         
Sbjct: 119 ENLPSGVSAPTMAPISSIMGEVMLLGVRSDSL--SPMELRTLSDWTIRPRVKSIGGIANV 176

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
           +       Q     DP +L+    + A++       N +  G         +  GNQY++
Sbjct: 177 VVIGGDYKQYQVMADPEKLKYYDISLAELLKKVEESNVNAPGG------FLNEYGNQYII 230

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
           +                    + + + +     +  +         +    A  +    L
Sbjct: 231 KGSGRA--------------YSIEQLAESVVKSVNGQSIKIKDVAEVKVGAADKIGDASL 276

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNI-VEERNVGADLGSDSIY 362
            A        S +  ++     E        L+              R       S    
Sbjct: 277 NANPAVILTISKQPDVNTLELTERLDAAILDLQNTLPKGVEIKSHIFRQANFIEASIDNL 336

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
             T    A  V+IVLF+ ++  +  L++  +I +++++++ +L L+G T+   S+ G+ +
Sbjct: 337 NQTLLEGAFFVVIVLFIFLMNWRTTLISLLAIPVSLLVSIIVLKLMGYTINTMSLGGMAI 396

Query: 423 GIGLAVDSNILVNERIREENRKNQS----VFCSLDMGFSRAYSTIFDS-------NITAL 471
            IG  VD  I+  E + +  R+N         +       A   I  S        I + 
Sbjct: 397 AIGALVDDAIIDVENVFKRLRENIRKPKAEREATLTVVKNASVEIRSSIIIATLIIIVSF 456

Query: 472 IATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMI-FIIRYKKMKSIDINPLSR 530
           +    L    G  ++   I    S+L S+  A+++   +    +   K +K         
Sbjct: 457 VPLFFLSGMEGRLLKPLGIAFITSVLTSLVVAVTLTPVLCSYLLKSEKVLKKQAEGTKVE 516

Query: 531 FFLIPDCIAIQFMRARFWGVGISIL---FSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
            +L      +     ++    I +    F    I              +G + +  +   
Sbjct: 517 RWLRAQYAGVLKAVLKYPKTIIGLTVGVFIGSLILFSQLGRSFLPEFNEGSLVISAVGVP 576

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
            + L       + ++   +     +       R +            +++      +   
Sbjct: 577 GMSLEESNKTGKMIEELLLEMPEVEVVTRRTGRAELDEHAQGVNAAEIDVPFTLGEKSKE 636

Query: 648 LSTIQNTEIVGPKISRELIRKGIVG 672
               +    +       +     + 
Sbjct: 637 QFFEEVRTKLSVVPGVNITLGQPIA 661



 Score = 64.3 bits (154), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/260 (9%), Positives = 81/260 (31%), Gaps = 9/260 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
            V         V    + +      +  N +      +  Q          R+   +   
Sbjct: 249 SVNGQSIKIKDVAEVKVGAADKIGDASLNANPAVILTISKQPDVNTLELTERLDAAILDL 308

Query: 642 ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTL 700
              +     I++            I      ++  +   +++       W   L ++  +
Sbjct: 309 QNTLPKGVEIKSHIFRQANFIEASIDNLNQTLLEGAFFVVIVLFIFLMNWRTTLISLLAI 368

Query: 701 ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV----VYDRMRKNMKL-YTTSI 755
            + +  ++    L G   N  ++  +   IG  V+D ++    V+ R+R+N++       
Sbjct: 369 PVSLLVSIIVLKLMGYTINTMSLGGMAIAIGALVDDAIIDVENVFKRLRENIRKPKAERE 428

Query: 756 SFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSS 812
           +   ++  +  E     +  ++   +S +P+    G    ++    I     ++ +   +
Sbjct: 429 ATLTVVKNASVEIRSSIIIATLIIIVSFVPLFFLSGMEGRLLKPLGIAFITSVLTSLVVA 488

Query: 813 IFIAAPILLFIYDWRAKNAR 832
           + +   +  ++        +
Sbjct: 489 VTLTPVLCSYLLKSEKVLKK 508



 Score = 60.1 bits (143), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 78/239 (32%), Gaps = 7/239 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            + L ++            +    + +         +  V E+       I      +   
Sbjct: 793  NQLATVASVSSPNTISREDVRRKIVVAANVQGRDLRGVVNEIQTIVEANIELPEGYRVEY 852

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTLGFFALF 714
                +   +  +  ++  + + + + + ++  FK    +   +  L L +   +      
Sbjct: 853  GGQFESEEKASQMLMITALAAILVIFLLLYFEFKNLKLSFIVLINLPLALIGGILIVYFT 912

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
                ++ A    ++L G +  + +++  R  +             L+ +   + L   + 
Sbjct: 913  SGIISIAATIGFISLFGIATRNGILLVSRYEELRNEGLAGF---QLLKEGALDRLNPILM 969

Query: 775  TSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSI---FIAAPILLFIYDWRAKN 830
            T+    ++++P+A+ GG        PMA  I+    S+     I  P    +   + +N
Sbjct: 970  TAFTTGLALIPLALKGGQPGNEIQSPMAVVILGGLLSATILNLIVIPCAYELVKLKKEN 1028


>gi|229845947|ref|ZP_04466059.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           7P49H1]
 gi|229810951|gb|EEP46668.1| predicted cation/multidrug efflux pump [Haemophilus influenzae
           7P49H1]
          Length = 1026

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 151/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 9   RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 50

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 51  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGALADVLA 110

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 111 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 167

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 168 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSAPAVMSALSANNVQTAAGNDNGYYVSYRN 227

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G          ++       
Sbjct: 228 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIASVELNKESD 267

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 268 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 327

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 328 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 387

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E +    ++ ++ F S  +G       +    I  +     +
Sbjct: 388 LALILAIGLVVDDAIVVLENVDRHIKEGETPFRSAIIGTREIAVPVISMTIALIAVYSPM 447

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 448 ALMGGITGTLFKEFALTLAGAVFISGIVALTLSPMMSSKLLKSNAQPTW 496



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 86/250 (34%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 764  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGTSSGDAIAWLQQQAND 823

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 824  NLPQ-GYTYDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 878

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF++ G   N+ +   ++TL+G      +++ +  ++    Y  
Sbjct: 879  VPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLNYGK 938

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVVAAS 810
            +    + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ +   
Sbjct: 939  TR--IEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLSIGTI 996

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 997  FTLFVLPVVY 1006



 Score = 43.9 bits (101), Expect = 0.11,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 74/187 (39%), Gaps = 9/187 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 301 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 357

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 358 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENV---DRHIKE 414

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 415 GETPFRSAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGI 474

Query: 811 SSIFIAA 817
            ++ ++ 
Sbjct: 475 VALTLSP 481


>gi|58000304|ref|YP_190199.1| heavy metal efflux pump [Escherichia coli]
 gi|47716818|gb|AAT37593.1| heavy metal efflux pump [Escherichia coli]
          Length = 1048

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 65/600 (10%), Positives = 145/600 (24%), Gaps = 45/600 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVMMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDLYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       +    T                     E           ++    +  
Sbjct: 117 VQGKLPAGVSSEIGPDATGVGWIFEY-ALVDRSGKHDLSELRSLQDWFLKFELKTIPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q   + DP +L Q   +  ++       N    G    +           
Sbjct: 176 EVASVGGVVKQYQIQLDPVKLTQYGISLPEVKQALSSSNQEAGGSSVEIAESEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +          +      I     +     
Sbjct: 236 YL-------------------QTIDDFKNIVLKTGENGVPVYLRDVARIQMGPEMRRGIA 276

Query: 302 VLTAPV-INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L     +   +   ++  +    I         L+A        +           +  
Sbjct: 277 ELNGQGEVAGGVVILRSGKNAREVITAVRDKLDTLKASLPEGVEIVTTYDRSQLIDRAID 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI
Sbjct: 337 NLSYKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREE-----------NRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            + +G  VD+ I++ E   +               N + +  +          +F S + 
Sbjct: 397 AIAVGAMVDAAIVMIENAHKRLEEWDHQHPGEQIDNATRWKVITDASVEVGPALFISLLI 456

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             ++ + +F      G      A T   S+  +   AI ++  +M F IR K        
Sbjct: 457 ITLSFIPIFTLEGQEGRLFGPLAFTKTYSMAGAAILAIIVIPILMGFWIRGKIPAETSNP 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      + ++ +      + ++ L     I  L   G  +      G  L + + 
Sbjct: 517 LNRLLIKAYHPLLLRVLHWPKTTLLVAALSIFTVIWPLSQVGGEFLPKINEGDLLYMPST 576



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 91/287 (31%), Gaps = 14/287 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I + +             + +     + + L  V           +  +N     
Sbjct: 763  VARYPINIRYPQDYRNSPQALREMPILTPMKQQITLGDVADIKVVSGPTMLKTENARPAS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K         +      +    +++L  K +V + +
Sbjct: 823  WIYIDARGRDMVSVVNDIKTAISQKVKLRPGTSVSFSGQFELLEHANKKL--KLMVPMTV 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  + +L   +   + F    G   ++      + L G +  
Sbjct: 881  MIIFILLYLAFR-RADEALLILMSLPFALVGGIWFLYWQGFHMSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYT--------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++ +         T     + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAHPELSRKETFTPEGLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 G  V+   A PM  G++ A   S+FI       I+  R K +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLIWLRRHKKS 1046


>gi|89068269|ref|ZP_01155679.1| transporter, AcrB/AcrD/AcrF family protein [Oceanicola granulosus
           HTCC2516]
 gi|89046186|gb|EAR52244.1| transporter, AcrB/AcrD/AcrF family protein [Oceanicola granulosus
           HTCC2516]
          Length = 1267

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 58/535 (10%), Positives = 139/535 (25%), Gaps = 39/535 (7%)

Query: 11  YSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFL 70
             M   +  ++A          +  P                   +  +          L
Sbjct: 14  MVMAFIVLSVVAGATAYVSLPKEGEPDIEIPALF---------VSVPFQGISAADSETLL 64

Query: 71  QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDP 130
               +   + +        +  +    ++L F     K      V   +  V  +     
Sbjct: 65  VKPMETELADIDGLKTMTSTASEGYAGVSLEFEFGWDKTQTMADVRDAMNNVQGQFPEGA 124

Query: 131 KKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRIL 190
            +  +      E  I++            +     + +   D++   E  +    + +  
Sbjct: 125 DQYTINEINFSEFPILIVNLTGRVPERTLLR----VAKDLQDRLEGLEPVLSASLTGQRD 180

Query: 191 IQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEIS 250
             L    DP RL     T  ++       N               +       ++  +I 
Sbjct: 181 EMLEVIIDPLRLEAYNVTATELIDVVTQNNQLIAAGEIETEQGAFAIKIPSSFDEAQDI- 239

Query: 251 GIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQ 310
                               ++     G R+        I                    
Sbjct: 240 -------------------YELVVKSDGDRQVTLGELAEIRLTFEDRTSTARFDGVNTVA 280

Query: 311 AIPSGKAQISGNFTIETAGILAAMLRAGSLPI----KLNIVEERNVGADLGSDSIYKGTC 366
                +   +   T        A  RA                          S  +G+ 
Sbjct: 281 LQVVKRKGFNVIDTSALVQQEVAAERAAWPEELRDAIDVGTSNDQSRTIASMVSQLEGSV 340

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
                LV+IV+   +      L+  F+I  + +L  A L+++  T++   + G++L +G+
Sbjct: 341 LTAVALVMIVVLAALGTR-PALLMGFAIPTSFLLCFAFLAVMDVTISNIVMFGLILAVGM 399

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
            VD  I+V E   +   +      +      R +  +  S  T L A + + F+ G   +
Sbjct: 400 LVDGAIVVVEYADKRIEEGVGPMHAYTDAAKRMFWPVVSSTATTLCAFLPMLFWPGLPGQ 459

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQ 541
                + ++++  +  ++ +    +  +       S      +         A++
Sbjct: 460 FMG-MLPVTLIFVLCASLIVALIFLPIMGGITGRMSRSFGRAANGLRRSLPWAVR 513



 Score = 58.9 bits (140), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/211 (15%), Positives = 71/211 (33%), Gaps = 22/211 (10%)

Query: 630  AQTRVLEMVKKKITEIVPLSTIQNTEIVGPK-ISRELIRKGIVGVIISAIAMLIYIWIRF 688
              T  +  ++  + +   L      E  G +    E     +   I +   M I +  +F
Sbjct: 990  TPTERIAELETWLADAGALPGDIGYEWAGDQADQAESQAFLMTAFIGALGLMFIILLAQF 1049

Query: 689  -KWYFALGAITTLILDITKTLGFFALFGIEFNL-TAVAAVLTLIGYSVNDKVVVYDRMRK 746
              +Y A+  +  +I+     L    +    F++      ++ L G  VN+ +V+ D  ++
Sbjct: 1050 NSFYNAVLVLLAVIMSTAGVLIGMLVMDQAFSIIMTGTGIVALAGIVVNNNIVLIDTYQE 1109

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA------VWGGSV------- 793
                          I ++  E L   + T++     + PM        +GG         
Sbjct: 1110 YAAYMPR----LKAIVRTAEERLRPVLLTTITTMAGLTPMMFGLSIDFFGGGYSVGSPTA 1165

Query: 794  --IGSFAIPMAFGIVVAASSSIFIAAPILLF 822
                  A  + FG+ +A   ++     +L  
Sbjct: 1166 LWWTQLATAVVFGLGIATVLTLVFTPSMLAL 1196



 Score = 57.4 bits (136), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/202 (11%), Positives = 61/202 (30%), Gaps = 13/202 (6%)

Query: 625 PGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYI 684
              S    + +   +    E +  +    T     +    ++ +    V+ +   ++I +
Sbjct: 292 IDTSALVQQEVAAERAAWPEELRDAIDVGTSNDQSRTIASMVSQLEGSVLTAVALVMIVV 351

Query: 685 WIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD-- 742
                   AL     +         F A+  +  +   +  ++  +G  V+  +VV +  
Sbjct: 352 LAALGTRPALLMGFAIPTSFLLCFAFLAVMDVTISNIVMFGLILAVGMLVDGAIVVVEYA 411

Query: 743 --RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAI- 799
             R+ +        +        +        V ++     + LPM  W G       + 
Sbjct: 412 DKRIEE-------GVGPMHAYTDAAKRMFWPVVSSTATTLCAFLPMLFWPGLPGQFMGML 464

Query: 800 -PMAFGIVVAASSSIFIAAPIL 820
                 ++ A+     I  PI+
Sbjct: 465 PVTLIFVLCASLIVALIFLPIM 486


>gi|222053315|ref|YP_002535677.1| heavy metal efflux pump, CzcA family [Geobacter sp. FRC-32]
 gi|221562604|gb|ACM18576.1| heavy metal efflux pump, CzcA family [Geobacter sp. FRC-32]
          Length = 1025

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 86/648 (13%), Positives = 175/648 (27%), Gaps = 46/648 (7%)

Query: 5   PWLVILYS-MICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
             +VI+   ++  +G+L  L     +  LD FP   P              + V      
Sbjct: 13  RLVVIVAWSVVAVLGILAFL-----RLPLDAFPDTTPVQVQ---------VNTVAPALSP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   +    ++  S L K      + R   +++T+ F D          V   +QGV 
Sbjct: 59  LEIERQVSAPLEQAISGLPKLKEVRSTSRFGMSQVTVIFEDGTNIYLSRQVVMERVQGV- 117

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
             L    +K  L         +               E           Q+       + 
Sbjct: 118 -ALPAGIEKPQLGPVATGLGEVFHYLLTAKD--KSLAELRTLHDWVVKPQMRSVPGVAEV 174

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   +     DP  L +   T  ++       N +  G                +V
Sbjct: 175 NTWGGDERRFEIVVDPEELAKRGLTMDRLIAAVERNNANVGGGTIDQAGESSLVQGVAIV 234

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +I GI +                     + G           +             
Sbjct: 235 TTPQDIEGIVITA-------------------KEGVPVRVADVARVVEGREIRRGAVTAD 275

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
                   +       + +            ++          V               +
Sbjct: 276 GKGEAVLGLGFMLMGENSHDVTTRLKARLEEVKKTLPKGVEVAVAYERTSLVDKVLHTVE 335

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                 A LV+ V+F+ +   + GL+   +I L+++    L+   G   +L S+  I   
Sbjct: 336 KNLFEGAILVIAVIFVFLGNFRAGLIVALAIPLSMLFAFDLMLRFGIAGSLMSLGAI--D 393

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRA----YSTIFDSNITALIATVVLFF 479
            GL VDS++++ E       + +S    +D+    A      T+F   I  ++   +L  
Sbjct: 394 FGLIVDSSVIMIENAERRLAEGKSDRSIIDVVREAAIEVRKPTMFGELIIMIVYLPILAL 453

Query: 480 FGGG--AVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
            G      R  A+T+  ++L SM  +++++  +  F ++ KK             L    
Sbjct: 454 EGVEGKLFRPMALTVIFALLGSMAMSLTLMPVLASFSLKRKKEHKEPWLVCRLKELYRPV 513

Query: 538 IAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSN 597
           +     R +           I  I              +G I +  +    V L      
Sbjct: 514 LGFALRRRKAVLAIAVGCLCIAGILSTRLGSEFVPRLMEGSIVINTVRLASVSLDESVRY 573

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              L+   +     + E+ +      +         + ++        
Sbjct: 574 GSHLERTLLEKFPNEIERIWTRTGSAEIATDPMGVELSDIFLTLKPRD 621



 Score = 61.6 bits (147), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 79/204 (38%), Gaps = 9/204 (4%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
              LE VKK + + V ++       +  K+   + +    G I+    + +++     + 
Sbjct: 301 KARLEEVKKTLPKGVEVAVAYERTSLVDKVLHTVEKNLFEGAILVIAVIFVFLG---NFR 357

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
             L     + L +         FGI  +L ++ A+    G  V+  V++ +   + +   
Sbjct: 358 AGLIVALAIPLSMLFAFDLMLRFGIAGSLMSLGAI--DFGLIVDSSVIMIENAERRLAEG 415

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVA 808
            +  S  D++ ++  E    +++  +   I  LP+    G    +    A+ + F ++ +
Sbjct: 416 KSDRSIIDVVREAAIEVRKPTMFGELIIMIVYLPILALEGVEGKLFRPMALTVIFALLGS 475

Query: 809 ASSSIFIAAPILLFIYDWRAKNAR 832
            + S+    P+L      R K  +
Sbjct: 476 MAMSL-TLMPVLASFSLKRKKEHK 498



 Score = 48.9 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/195 (15%), Positives = 69/195 (35%), Gaps = 9/195 (4%)

Query: 615 KNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
               V +Q         + V ++ K    E+   S          +  +   ++ ++ V 
Sbjct: 805 GKRRVVVQANVRGRDVGSFVADVQKSIEREVKLPSGYYVRYGGQFENLQRAQQRLMIVVP 864

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG--IEFNLTAVAAVLTLIGY 732
           ++   +   ++  +        + T +       G  AL+   I F+++A    + L G 
Sbjct: 865 VALALIFTLLYFTYGRVLDAARVFTGV-PFAAVGGIVALWFRDIPFSISAGVGFVALSGV 923

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---W 789
           +V   +V+   +R  +          D I ++  + L   + T++ A    +PMA+    
Sbjct: 924 AVLGDMVLVSAVRDLLA---KGTPLIDAIKQAAEQRLRPVLMTALVASFGFIPMALNTGI 980

Query: 790 GGSVIGSFAIPMAFG 804
           G  V    A  +  G
Sbjct: 981 GAEVQRPLATVVIGG 995


>gi|169632229|ref|YP_001705965.1| RND divalent metal cation efflux transporter [Acinetobacter
           baumannii SDF]
 gi|169151021|emb|CAO99662.1| RND divalent metal cation efflux transporter [Acinetobacter
           baumannii]
          Length = 1052

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 61/616 (9%), Positives = 161/616 (26%), Gaps = 60/616 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  W+++       +G+         +  +D  P                   +  + +
Sbjct: 24  QNAIWVMLFVLAWIGVGIWS-----YQKLPIDAVPDITNTQ-----------VQINTQAN 67

Query: 62  EDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +   + +          R   +++T+ F D          +   L
Sbjct: 68  GYTALEVEQRITYPIENAMAGIPNLEQTRSISRYGLSQVTIIFKDGTDIYWARQLINQRL 127

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLS------QNNIDQVISHAIEQSMEIIRQRIDQ 173
           Q  + +L       +   +T                   D     A++           Q
Sbjct: 128 QEADGQLPESVDPVMSPVSTGLGEIYQWVIKAKSGAKKADGTAYTAMDLREIQDWIVRPQ 187

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   +               D  RL+QL  +  +        N ++          
Sbjct: 188 LQRVKGVAEINSIGGYNKTYIVSPDLKRLQQLQISINEFQTALQENNENRGAGFIEENGE 247

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           + +     ++    +I                     +I+           V   N+   
Sbjct: 248 QLTVRVPGMLSSVEDIQ--------------------NITVSTKNGLPIRVVDVANVSIG 287

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +               I       +     +        +++                
Sbjct: 288 HDLRTGAATYNGEETVLGIAMMMMGENSRTVAQAVDAKIKEIQSTLPKGVEIETVYDRTS 347

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +  +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  
Sbjct: 348 LVNKAIATVQKNLVEGAILVIVILFIFLGNFRAALITACVIPLSMLFTLTGMAEQNISAN 407

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTI 463
           L  +  +  GI   VD  +++ E       + Q            F  + +   +A   +
Sbjct: 408 LMGLGALDFGII--VDGAVVIVENCIRRLAEAQHALHRPLTRSERFKEVFLAAKQARRPL 465

Query: 464 FDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               +  L+  + +F   G         A+T+ +++L +M  +++ V A +   +  +  
Sbjct: 466 IFGQMIILVVYLPIFALSGVEAKMFYPMAMTVVMALLGAMILSVTFVPAAVALFVTGEVK 525

Query: 521 KSIDINPLSRFFLIPDCI-AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           +              D +     ++       +SIL     +           +      
Sbjct: 526 EKETRWMQLLKQKYRDVLDQAYQLKIVVVSFALSILVLTGVLATQMGSEFAPQLSEGDFA 585

Query: 580 QLGVLANRPVDLSVVR 595
              + +        +R
Sbjct: 586 LQQMRSPSTGLEQSLR 601



 Score = 45.1 bits (104), Expect = 0.046,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 75/251 (29%), Gaps = 35/251 (13%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  ++      Q         V +          + V E+      E +P        
Sbjct: 815  QDVAKVERTSGLNQVGRENGKRRVIITANVEGRDLGSFVQELRTTLAKEQLPAGYWLEYG 874

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                 ++    R   + V ++   + I +               +  ++ ++L  F+   
Sbjct: 875  GQFENLASAAAR-MKIVVPLALAMIFILLM-------------AVFHNVKESLLVFSGVP 920

Query: 716  IEFNLTAVA--------------AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               +   +A                + L G +V + +V+   +++           +   
Sbjct: 921  FALSGGLIALWLRDIPLSMSAGVGFIALSGVAVLNGLVMLSFIKE----LREKFDIQTAT 976

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   L   + T+  A    +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 977  WNGAILRLRPVLMTACVASHGFIPMALATGTGAEVQRPLATVVIGGIISSTILTLVLLPV 1036

Query: 819  ILLFIYDWRAK 829
            I  ++ + + K
Sbjct: 1037 IYRWMNEGKTK 1047


>gi|218532071|ref|YP_002422887.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
 gi|218524374|gb|ACK84959.1| acriflavin resistance protein [Methylobacterium chloromethanicum
           CM4]
          Length = 1076

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/544 (9%), Positives = 147/544 (27%), Gaps = 38/544 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++      +L  ++   G+   +            P  +       GL            
Sbjct: 8   LKFRITTYVLAVLMMLGGVSAIVVTPKDVLPAVDIPVVVVVWT-YTGL------------ 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              +            + + +        +  Q  + + + F  S   +    +V     
Sbjct: 55  SAPEMEKRITTYSEFGISNNVNNIARMESTSLQGTSVMKIYFDQSVSIDLAIAQVVSSTN 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + +    +  ++V  +   + ++              +       +   ++     +
Sbjct: 115 SIRALMPPGVQPPVIVRFSASSVPVIQLALTSA--KDSLNKVYDYAQYRIRQRLTQVPGS 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+  + D   L+ L  T  +++      N +    +  +          
Sbjct: 173 TLPSPFGGAPRQVMVDLDLHALQALGMTPLEVTNAVTSQNLTIPSGLAKI---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N  P     + +I    +  +         +       ++ 
Sbjct: 223 ----------GEQQYPVQMNATPDAIAALNEIPIKVVNGQPVLVRDVAYVRDGGPPQVNV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              S    +         +RA +                  +  
Sbjct: 273 VRADGAASVLMRVLKNGTASTLDVVNNVKAALPDIRAAAPEGMEIKPLFDQSVFVSNAIE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I A L  + + + +   +  L+   SI L ++ +LALL+ LG T+ + ++ G+
Sbjct: 333 GVWHEAVIAAALTGLTILLFLGSWRSTLIVLVSIPLCLMTSLALLAALGHTINVMTLGGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L +G+ VD   +  E       + +    ++  G +        S ++   A V +F  
Sbjct: 393 ALAVGILVDDVTVAIENTYRLFEEGKPFRNAVVEGAAGIAKPALISTLSICAAFVSVFAL 452

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
                      A+ +  ++L S     ++V  M+  ++  + ++       +      + 
Sbjct: 453 TDTPKYLFTPQALAVVFAMLTSYLLTRTLVPVMIDVLVAREYLQHHGGEADAPRRGRIER 512

Query: 538 IAIQ 541
             + 
Sbjct: 513 ALVW 516



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 87/232 (37%), Gaps = 7/232 (3%)

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                   + + +  F V    Q  D  A  R ++ +  +  + +P     +       + 
Sbjct: 843  PTQTVINHVNTQPTFNVYAAVQDRDLGAVARDIDRIVAEEQKTLPAPDKISVRGQIENMR 902

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
                R GI G+ I+ +A+ + + + +  W      +  L +     +    + G  F++ 
Sbjct: 903  AAFFRLGI-GLGIAVVAVYLLMAVNYQSWGDPFVVLAALPVAFCGIVASLFITGTAFSIP 961

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            ++   +  +G +  + +++    ++      T  S R+    +    L   + T+ A F+
Sbjct: 962  SLFGAIMSVGIASANSILLVTFAKE--HREATGCSAREAAIVAGETRLRPVLMTASAMFL 1019

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++PMA+    GG    + A  +  GI +   S++     +   +    AK 
Sbjct: 1020 GLVPMALGTGEGGEQNAALARAVMGGIALGTPSTLLFVPFLYSLLRRGEAKP 1071



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 85/278 (30%), Gaps = 5/278 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              +   +         +  +     I     I + V+  +PV +  V    +       
Sbjct: 212 NLTIPSGLAKIGEQQYPVQMNATPDAIAALNEIPIKVVNGQPVLVRDVAYVRDGGPPQVN 271

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +        +  L+     ++     ++     I    P                  I
Sbjct: 272 VVRADGAASVLMRVLKNGTASTLDVVNNVKAALPDIRAAAPEGMEIKPLFDQSVFVSNAI 331

Query: 667 RKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                  VI +A+  L  +     W   L  + ++ L +  +L   A  G   N+  +  
Sbjct: 332 EGVWHEAVIAAALTGLTILLFLGSWRSTLIVLVSIPLCLMTSLALLAALGHTINVMTLGG 391

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  V+D  V  +      +L+     FR+ + +        ++ ++++   + + 
Sbjct: 392 LALAVGILVDDVTVAIEN---TYRLFEEGKPFRNAVVEGAAGIAKPALISTLSICAAFVS 448

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +     +    F  P A  +V A  +S  +   ++  +
Sbjct: 449 VFALTDTPKYLF-TPQALAVVFAMLTSYLLTRTLVPVM 485


>gi|163853256|ref|YP_001641299.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
 gi|163664861|gb|ABY32228.1| acriflavin resistance protein [Methylobacterium extorquens PA1]
          Length = 1076

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 53/544 (9%), Positives = 147/544 (27%), Gaps = 38/544 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++      +L  ++   G+   +            P  +       GL            
Sbjct: 8   LKFRITTYVLAVLMMLGGVSAIVVTPKDVLPAVDIPVVVVVWT-YTGL------------ 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              +            + + +        +  Q  + + + F  S   +    +V     
Sbjct: 55  SAPEMEKRITTYSEFGISNNVNNIARMESTSLQGTSVMKIYFDQSVSIDLAIAQVVSSTN 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + + +    +  ++V  +   + ++              +       +   ++     +
Sbjct: 115 SIRALMPPGVQPPVIVRFSASSVPVIQLALTSA--KDSLNKVYDYAQYRIRQRLTQVPGS 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+  + D   L+ L  T  +++      N +    +  +          
Sbjct: 173 TLPSPFGGAPRQVMVDLDLHALQALGMTPLEVTNAVTSQNLTIPSGLAKI---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N  P     + +I    +  +         +       ++ 
Sbjct: 223 ----------GEQQYPVQMNATPDAIAALNEIPIKVVNGQPVLVRDVAYVRDGGPPQVNV 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                              S    +         +RA +                  +  
Sbjct: 273 VRADGAASVLMRVLKNGTASTLDVVNNVKAALPDIRAAAPEGMEIKPLFDQSVFVSNAIE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I A L  + + + +   +  L+   SI L ++ +LALL+ LG T+ + ++ G+
Sbjct: 333 GVWHEAVIAAALTGLTILLFLGSWRSTLIVLVSIPLCLMTSLALLAALGHTINVMTLGGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
            L +G+ VD   +  E       + +    ++  G +        S ++   A V +F  
Sbjct: 393 ALAVGILVDDVTVAIENTYRLFEEGKPFRNAVVEGAAGIAKPALISTLSICAAFVSVFAL 452

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
                      A+ +  ++L S     ++V  M+  ++  + ++       +      + 
Sbjct: 453 TDTPKYLFTPQALAVVFAMLTSYLLTRTLVPVMIDVLVAREYLQHHGGEADAPRRGRIER 512

Query: 538 IAIQ 541
             + 
Sbjct: 513 ALVW 516



 Score = 67.4 bits (162), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 36/232 (15%), Positives = 87/232 (37%), Gaps = 7/232 (3%)

Query: 603  IGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKIS 662
                   + + +  F V    Q  D  A  R ++ +  +  + +P     +       + 
Sbjct: 843  PTQTVINHVNTQPTFNVYAAVQDRDLGAVARDIDRIVAEEQKTLPAPDKISVRGQIENMR 902

Query: 663  RELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLT 721
                R GI G+ I+ +A+ + + + +  W      +  L +     +    + G  F++ 
Sbjct: 903  AAFFRLGI-GLGIAVVAVYLLMAVNYQSWGDPFVVLAALPIAFCGIVASLFITGTAFSIP 961

Query: 722  AVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFI 781
            ++   +  +G +  + +++    ++      T  S R+    +    L   + T+ A F+
Sbjct: 962  SLFGAIMSVGIASANSILLVTFAKE--HREATGCSAREAAIVAGETRLRPVLMTASAMFL 1019

Query: 782  SVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             ++PMA+    GG    + A  +  GI +   S++     +   +    AK 
Sbjct: 1020 GLVPMALGTGEGGEQNAALARAVMGGIALGTPSTLLFVPFLYSLLRRGEAKP 1071



 Score = 60.9 bits (145), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 85/278 (30%), Gaps = 5/278 (1%)

Query: 547 FWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDI 606
              +   +         +  +     I     I + V+  +PV +  V    +       
Sbjct: 212 NLTIPSGLAKIGEQQYPVQMNATPDAIAALNEIPIKVVNGQPVLVRDVAYVRDGGPPQVN 271

Query: 607 SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
             +        +  L+     ++     ++     I    P                  I
Sbjct: 272 VVRADGAASVLMRVLKNGTASTLDVVNNVKAALPDIRAAAPEGMEIKPLFDQSVFVSNAI 331

Query: 667 RKGIV-GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
                  VI +A+  L  +     W   L  + ++ L +  +L   A  G   N+  +  
Sbjct: 332 EGVWHEAVIAAALTGLTILLFLGSWRSTLIVLVSIPLCLMTSLALLAALGHTINVMTLGG 391

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  V+D  V  +      +L+     FR+ + +        ++ ++++   + + 
Sbjct: 392 LALAVGILVDDVTVAIEN---TYRLFEEGKPFRNAVVEGAAGIAKPALISTLSICAAFVS 448

Query: 786 MAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
           +     +    F  P A  +V A  +S  +   ++  +
Sbjct: 449 VFALTDTPKYLF-TPQALAVVFAMLTSYLLTRTLVPVM 485


>gi|21233458|ref|NP_639375.1| cation efflux system protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66770422|ref|YP_245184.1| cation efflux system protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993627|ref|YP_001905637.1| RND superfamily protein [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21115304|gb|AAM43257.1| cation efflux system protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575754|gb|AAY51164.1| cation efflux system protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167735387|emb|CAP53601.1| RND superfamily protein [Xanthomonas campestris pv. campestris]
          Length = 1075

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 79/604 (13%), Positives = 168/604 (27%), Gaps = 64/604 (10%)

Query: 5   PWLVILYSMICCI-GLLIALPNF-LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            + +    ++  + G+LIA+  +   +  +D  P                 +++ ++V+ 
Sbjct: 12  RFAIAQRWLMLALTGVLIAIGAWSFSRLPIDATPDI---------------TNVQVQVNT 56

Query: 63  DDF------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                        +    + + + L          R   +++T  FAD         +V 
Sbjct: 57  AAPGYSPLESEQRVTFPLETVLAGLPGLESTRSLSRYGLSQVTAVFADGTDLYFARQQVA 116

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS------HAIEQSMEIIRQR 170
             LQ V S+L  + +  L    T      + +                A +         
Sbjct: 117 ERLQQVKSQLPPELEPQLGPIATGLGEIFMYTVEAKPNARKADGSAWTATDLRTLQDWVV 176

Query: 171 IDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGV 230
             Q+       +         Q+    DP+RL  L  T   ++      N +        
Sbjct: 177 RPQLRNVPGVTEVNTIGGHARQIHITPDPARLVALGFTLDDVAQAVEANNRNVGAGYIER 236

Query: 231 RFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNI 290
              +        V+D  +I                      I  D              +
Sbjct: 237 SGQQFLVRVPGQVDDIAQIGA--------------------IVLDRREGVPIRVRDVAQV 276

Query: 291 GKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEER 350
           G+   +           +           +     + A     +  A        +    
Sbjct: 277 GEGRELRNGAATQDGTEVVLGTVFMLVGANSRTVAQAAAQRLELANASLPAGVRAVPVYD 336

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                  +           A LV++VLF+++   +  L+    I L ++ TL  +   G 
Sbjct: 337 RTALVDRTIVTVAKNLIEGALLVIVVLFLMLGNVRAALITAAVIPLAMLFTLTGMVRGGV 396

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN--- 467
           +  L S+    L  GL VD  +++ E       + Q+    +     R   T   +    
Sbjct: 397 SGNLMSLGA--LDFGLIVDGAVIIVENCLRRFGEAQARLGRVLERDERFALTAEATAEVI 454

Query: 468 ----------ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY 517
                         +    L    G      A+T+ L++  +M  +++ V A +  ++  
Sbjct: 455 RPSLFGVGIIAAVYLPVFALTGIEGKMFHPMAVTVVLALTGAMLLSLTFVPAAIALLLGG 514

Query: 518 KKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKG 577
           K  +  +        +    +      AR+ G+G      +C+               +G
Sbjct: 515 KVAEHENRAMRWARGVYAPLLDRVLRHARWVGIGALTTVVLCAALATRLGSEFIPNLDEG 574

Query: 578 GIQL 581
            I L
Sbjct: 575 DIAL 578



 Score = 47.8 bits (111), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/203 (15%), Positives = 72/203 (35%), Gaps = 7/203 (3%)

Query: 607  SFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI 666
              Q    +    + +     D    + V E+ ++   E+   +          +      
Sbjct: 838  PNQINREDGKRRIVITANVRDRDLGSFVAEVQQRVQAEVALPTGYWIGYGGTFEQLISAG 897

Query: 667  RKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
            ++    V  + + +   ++  F     A+   + + L +T  +   AL G+  +++A   
Sbjct: 898  QRLAWVVPATLLLIFALLYWSFGSLRDAVVVFSGVPLALTGGVVALALRGLSLSISAGVG 957

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
             + L G +V + +V+   +R    L    +     + +     L   + T++ A +  +P
Sbjct: 958  FIALSGVAVLNGLVMIAFIR---GLRDAGMPLEQALREGALARLRPVLMTALVAALGFVP 1014

Query: 786  MAV---WGGSVIGSFAIPMAFGI 805
            MA     G  V    A  +  GI
Sbjct: 1015 MAFNVGAGAEVQRPLATVVIGGI 1037


>gi|116622511|ref|YP_824667.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116225673|gb|ABJ84382.1| acriflavin resistance protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1057

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 64/487 (13%), Positives = 149/487 (30%), Gaps = 26/487 (5%)

Query: 62  EDDFVNGFLQMYSDELRSF-LKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
             + + G +    + + +  +                + +    +   +    +VT   Q
Sbjct: 55  SAEEMEGRMTSVYERVLTTLVNNVEHVESMTVNGLAVVKVFLQPNASVDTATAQVTGASQ 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            +  ++       L++T     + I+    +   +     +     +     Q+      
Sbjct: 115 TILRQMPPGVVPPLVLTYNASSVPILQLGLSSKTLSEQ--QLGDLGLNFIRTQLVTIPGA 172

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                      Q+  + +P+ L+    + A +       N         +          
Sbjct: 173 SVPYPYGGKQRQVMIDLNPALLQSKGISPADVVTAFNQQNLILPAGTAKI---------- 222

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                     G        N  PK  + + D+   ++G    +     ++    A   + 
Sbjct: 223 ----------GQFEYDVDLNASPKQVEEMNDLPIKQVGNSTIYIRDVAHVRDGFAPQTNI 272

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             L              + S    +  A  L   + +   P                S  
Sbjct: 273 VRLDGQRGALVSILKTGKGSTLDIVSGARQLLPTIASTLPPDLKMQPLADQSIFVRASVE 332

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I A L   ++ + +   +  ++   SI L+++ ++ +LS LG T+ + ++ G+
Sbjct: 333 GVVREAVIAAALTGFMILVFLGSWRSTVIIAISIPLSILTSILVLSALGETINIMTLGGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +G+ VD   +  E I        S+  ++  G ++       S I   I  + +FF 
Sbjct: 393 ALAVGILVDDATVTIENIERYLEGGHSLRDAILEGAAQISVPALVSTICICIVFLPMFFL 452

Query: 481 GG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
           GG         A  +  ++L S   + ++V  + +F++R K+  S         F     
Sbjct: 453 GGVARYLFVPLAEAVVFAMLASYVLSRTLVPTLAMFLLRAKQHVSGRTRNPFVLFQRAFE 512

Query: 538 IAIQFMR 544
            A   +R
Sbjct: 513 RAFDRLR 519



 Score = 69.3 bits (167), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 62/152 (40%), Gaps = 4/152 (2%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            VI +A+   + +     W   +    ++ L I  ++   +  G   N+  +  +   +G
Sbjct: 338 AVIAAALTGFMILVFLGSWRSTVIIAISIPLSILTSILVLSALGETINIMTLGGLALAVG 397

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+D  V  + +    +      S RD I +   +    ++ +++   I  LPM   GG
Sbjct: 398 ILVDDATVTIENI---ERYLEGGHSLRDAILEGAAQISVPALVSTICICIVFLPMFFLGG 454

Query: 792 SVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
                F +P+A  +V A  +S  ++  ++  +
Sbjct: 455 VARYLF-VPLAEAVVFAMLASYVLSRTLVPTL 485



 Score = 63.6 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 64/161 (39%), Gaps = 7/161 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++ + + + + I + F  W      I  L   +   + F        ++ A+   +  +G
Sbjct: 886  LVFAIVLVYLLIVVNFQSWLDPFIIIMALPAALAGIVMFLFATHTRLSVPALMGSIMCMG 945

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V    ++  +L     + +  I+          + T++A  I ++PMA+   
Sbjct: 946  VATANSILVVSFAKE--RLELHHDALQAAIEAGFTR-FRPVLMTALAMIIGMIPMALGMG 1002

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
             GG         +A G++ A  +++F    I   ++ WR  
Sbjct: 1003 EGGEQNAPLGRAVAGGLMCATVATLFFVPAIFSLLHGWRKP 1043


>gi|260203347|ref|ZP_05770838.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis K85]
 gi|289572782|ref|ZP_06453009.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis K85]
 gi|289537213|gb|EFD41791.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis K85]
          Length = 966

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 63/532 (11%), Positives = 164/532 (30%), Gaps = 63/532 (11%)

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                 +  +     +  +VL+ +F  +      L       +  +  + +LS+      
Sbjct: 173 NTKHDIANAERWNLPIILMVLVAVFGSLAAAAIPLALAVCTVVITMGLVFVLSMHTTMSV 232

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             +    + GI LAVD ++ +  R REE R  +    ++D   + +   +  S +T + +
Sbjct: 233 FVTSTVSMFGIALAVDYSLFILMRYREELRCGRRPPDAVDAAMATSGLAVVLSGMTVIAS 292

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDINPLS 529
              ++     A+R  A    L++ ++M T+ ++  A++    R    +         P S
Sbjct: 293 LTGIYLINTPALRSMATGAILAVAVAMLTSATLTPAVLATFARAAAKRSALVHWSRRPAS 352

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA---- 585
                        MR  +     +    +          L   +  +      +      
Sbjct: 353 TQSWFWSRWVGWVMRRPWITALAASTVLLVMAAPATLMVLGNSLLRQFDSSHEIRTGAAA 412

Query: 586 ---------------------------NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                                           ++ +R  +        +      + N  
Sbjct: 413 AAQALGPGALGPVQVLVRFDAGGASAPEHSQTIAAIRHRIAQAPNVVSAAPPRFADDNGS 472

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VII 675
             L              + +    T++  ++     ++ GP    +     +     +++
Sbjct: 473 ALLSAVLSVDPEDLGARDTITWMRTQLPRVAGAAQVDVGGPTALIKDFDDRVSATQPLVL 532

Query: 676 SAIAMLIYIWIRFKWY---FALGAITTLILDITKT---------------LGFFALFGIE 717
             +A++ ++ +         A   +   +L +                  LGF AL  I+
Sbjct: 533 VFVAVIAFLMLLISIRSVFLAFKGVLMTLLSVAAAYGSLVMVFQWGWARGLGFPALHSID 592

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             +  +  +    G S++ ++ +  R+R+    +  +   RD +   +  T  R++ ++ 
Sbjct: 593 STVPPL-VLAMTFGLSMDYEIFLLTRIRE---RFLQTGQTRDAVAYGV-RTSARTITSAA 647

Query: 778 AAFISVLPMAVW-GGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
              I+V     + G  ++    +  A  I V      + +   ++     W 
Sbjct: 648 LIMIAVFCGFAFAGMPLVAEIGVACAVAIAVDATVVRLVLVPALMAMFDRWN 699



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 61/159 (38%), Gaps = 6/159 (3%)

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIG--YSV 734
           I +++ + +      A   +   +  +  T+G   +  +   ++  V + +++ G   +V
Sbjct: 188 IILMVLVAVFGSLAAAAIPLALAVCTVVITMGLVFVLSMHTTMSVFVTSTVSMFGIALAV 247

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  + +  R R+ ++         D +D ++  +    V + M    S+  + +     +
Sbjct: 248 DYSLFILMRYREELRCGRR---PPDAVDAAMATSGLAVVLSGMTVIASLTGIYLINTPAL 304

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            S A      + VA  +S  +   +L       AK + +
Sbjct: 305 RSMATGAILAVAVAMLTSATLTPAVLATFARAAAKRSAL 343


>gi|264678628|ref|YP_003278535.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni CNB-2]
 gi|262209141|gb|ACY33239.1| heavy metal efflux pump, CzcA family [Comamonas testosteroni CNB-2]
          Length = 1056

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 57/533 (10%), Positives = 144/533 (27%), Gaps = 47/533 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N   ++++ + +   G+  A      ++ +D  P       I                  
Sbjct: 12  NRFLVLVVTAFLVAAGIWSA-----SRTPVDALPDLSDVQVI---------VRTTYPGKP 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  V
Sbjct: 58  PQVVEDLVTYPLTTTMLSVPGAKTVRGYSFFGDSFVYILFDDKTDPYWARSRVVEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L +     L    T                 +   +           ++       +
Sbjct: 118 QSRLPIGATAALGPDATGVGWVYEY-ALVDRSGHNDIGQLRALNDWFLKFELKTVPDVAE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     D  R+R L  T + +                          NQ  
Sbjct: 177 VASIGGMVRQYQVVLDADRMRVLGITQSVVVQALQK-------------------ANQSS 217

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
               VE++       +  F                      +        P        +
Sbjct: 218 GGSVVEMAETEYMVRSRGFLQSLEDFRTIPLTLSGATPVLLKDVATVQIGPEMRRGIAEL 277

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TIE        L+         +           +    
Sbjct: 278 DGEGEVTGGVVVMRSGKNARATIEAVKAKLETLKPSLPKGVEVVETYDRSQLIDRAVDNL 337

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           +        +V +V  + + + +  LVA  ++ + V+    ++   G +  + S+ G+ +
Sbjct: 338 RVKLLEEFAVVAVVCAIFLFHLRSALVAVVTLPIGVLAAFGVMHWQGVSANILSLGGVAI 397

Query: 423 GIGLAVDSNILVNERIREE-----NRKNQSVFCS-----LDMGFSRAYSTIFDSNITALI 472
            +G  VD+++++ E   +       R  +    +     +          +F S +   +
Sbjct: 398 ALGAMVDASVVLVEAAHKHLEHFEERHGRPPSVAERWELIAQSAVEVGPALFFSLLVITL 457

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           + + +F      G      A T   ++  +   ++++V  +M ++IR +  K 
Sbjct: 458 SFLPVFTLEAQEGRLFSPLAFTKTYAMAAAAGLSVTLVPVLMGYLIRGRIPKE 510



 Score = 57.8 bits (137), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 81/256 (31%), Gaps = 17/256 (6%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
           + V    +   +              G    +   +       A    LE +K  + + V
Sbjct: 259 KDVATVQIGPEMRRGIAELDGEGEVTGGVVVMRSGKNARATIEAVKAKLETLKPSLPKGV 318

Query: 647 PLSTIQNTEIVGPKISRELIRKGI--VGVIISAIAMLIYIWIRFKWYFALGAITTLILDI 704
            +    +   +  +    L  K +    V+    A+ +     F    AL A+ TL + +
Sbjct: 319 EVVETYDRSQLIDRAVDNLRVKLLEEFAVVAVVCAIFL-----FHLRSALVAVVTLPIGV 373

Query: 705 TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRK--NMKLYTTSISFR---- 758
               G     G+  N+ ++  V   +G  V+  VV+ +   K                  
Sbjct: 374 LAAFGVMHWQGVSANILSLGGVAIALGAMVDASVVLVEAAHKHLEHFEERHGRPPSVAER 433

Query: 759 -DLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIF 814
            +LI +S  E      ++ +   +S LP+          F   A    + +  AA  S+ 
Sbjct: 434 WELIAQSAVEVGPALFFSLLVITLSFLPVFTLEAQEGRLFSPLAFTKTYAMAAAAGLSVT 493

Query: 815 IAAPILLFIYDWRAKN 830
           +   ++ ++   R   
Sbjct: 494 LVPVLMGYLIRGRIPK 509



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 72/231 (31%), Gaps = 11/231 (4%)

Query: 608  FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP-KISRELI 666
                  E   L    Y          V+  ++  + + V +    +    G  +      
Sbjct: 808  PPMIRSENARLSGWVYVDVRGRDLRSVVHDMQALVGKQVTMPAGYSLSWSGQFEYLERAT 867

Query: 667  RKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
             +  V V ++   + + +++ F+    A   +  +   +     F    G   ++ +   
Sbjct: 868  ERMTVVVPLTLAVIFMLLYLLFRSASDAALVMAAVPFSLVGGFWFIWALGHAVSVASAVG 927

Query: 726  VLTLIGYSVNDKVVVYDRMRKNMKLY------TTSISFRDLIDKSINETLGRSVYTSMAA 779
             + L G +    VV+   ++   K +          +    I +     +     T    
Sbjct: 928  FIALAGVAAEFGVVMLVYLQNAWKQHLAAGEPDNEETLLAAIREGAVMRVRPKAMTVAVV 987

Query: 780  FISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
               +LP+ +    G  V+   A PM  G+V A   S+ +       I+  R
Sbjct: 988  MAGLLPILIGHGTGSEVMTRIAAPMVGGMVTAPLLSMLVIPAAWYLIHRKR 1038


>gi|228918048|ref|ZP_04081577.1| Swarming motility protein swrC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228841591|gb|EEM86706.1| Swarming motility protein swrC [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 1038

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 196/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKDALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       ++     K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASDQGSQTAGAGAQMPQMNPAAMNGIPTVTLSEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 SEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|307726240|ref|YP_003909453.1| heavy metal efflux pump, CzcA family [Burkholderia sp. CCGE1003]
 gi|307586765|gb|ADN60162.1| heavy metal efflux pump, CzcA family [Burkholderia sp. CCGE1003]
          Length = 1068

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 63/533 (11%), Positives = 143/533 (26%), Gaps = 48/533 (9%)

Query: 5   PWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
            +LV+L   ++   G+         Q+ LD  P       I                   
Sbjct: 13  RFLVLLATVLVTAWGVYSV-----TQTPLDALPDLSDTQVI---------IKASYPGKAP 58

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   +          +                + + F D         +V  +L  V 
Sbjct: 59  QVIEDQVTYPLTTTLLGVPGAKAIRAYSSFGDAFVYVLFDDKTDPYWARSRVLEYLNQVQ 118

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S+L      +L    T                     +           ++       + 
Sbjct: 119 SRLPPGATVSLGPDATGVGWVYEY-ALVDRTGQHDLGQLRALNDWFLKFELKSVPDVSEV 177

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                ++ Q     DP +LR    + A ++      N    G +  +        +   +
Sbjct: 178 ASIGGMVRQYQVVLDPDKLRAYGISQAMVADALGKANQESGGSVVEMAESEYMVRSSGYL 237

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               +                     V +  +E G              P        + 
Sbjct: 238 RSLDDFRN------------------VVLRTNEAGTPVLLGDVARVQIGPETRRGVAELN 279

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   +   ++  +   TI+      A L+         +           +    K
Sbjct: 280 GQGEVAGGVIVMRSGKNALTTIDAVKTKLASLKRSLPAGVEVVTTYDRSQLIERAVDNLK 339

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                   +V +V  + + + +   VA  S+ L V+    ++   G    L S+ GI + 
Sbjct: 340 DKLVEEFIIVGLVCAVFLFHLRSAFVAILSLPLGVLAAFIVMRYQGVNANLMSLGGIAIA 399

Query: 424 IGLAVDSNILVNERIR------EENRKNQSVFCS-----LDMGFSRAYSTIFDSNITALI 472
           IG  +D+ I++ E         + +     +  +     +    +     +F S +   +
Sbjct: 400 IGAMIDAAIVMIENAHKHLEAYDHDHPGTPITTAQRWELIATSAAEVGPALFFSLLIITL 459

Query: 473 ATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKS 522
           + + +F      G      A T   +I  +   ++++V  +M ++IR +    
Sbjct: 460 SFIPVFSLEGQEGKLFSPLAFTKTYTIAAAAGLSVTLVPVLMGYLIRGRIPHE 512



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 82/253 (32%), Gaps = 14/253 (5%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             + L  V     +     I  +N        V ++     S  Q     + +K +     
Sbjct: 795  QIQLGDVAHIAIADGPPMIRSENARLSGYVYVDIRNTDLQSAVQAMQRAVAQKVVLPPGY 854

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAITTLILDITK 706
              T         + + +L       + ++ + + + +++ F     AL  ++T+   +  
Sbjct: 855  SITWSGQFEYLERAAAKLRT----VIPVTLVVIFVLLFVTFNSAADALLLMSTVPFALVG 910

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR------DL 760
                  + G   ++      + L G +    VV+   +++ +     +          D 
Sbjct: 911  GFWLIWILGHAVSVATAVGFIALAGVAAEFGVVMLLYLKEALNRRLKAGEPLTETLLFDA 970

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAA 817
            I +     +     T       ++P+ V    G  V+   A PM  G+V A   S+F+  
Sbjct: 971  IREGAVLRVRPKAMTVAVVLAGLIPIMVGHGAGSEVMQRIAAPMVGGMVTAPLLSMFVIP 1030

Query: 818  PILLFIYDWRAKN 830
                 I   RA+ 
Sbjct: 1031 AAWFVIQRRRARR 1043



 Score = 53.2 bits (125), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/166 (17%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 677 AIAMLIYIW-IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
            I + +      F    A  AI +L L +          G+  NL ++  +   IG  ++
Sbjct: 346 FIIVGLVCAVFLFHLRSAFVAILSLPLGVLAAFIVMRYQGVNANLMSLGGIAIAIGAMID 405

Query: 736 DKVVVYDRMRKNMKLYTTSISFR--------DLIDKSINETLGRSVYTSMAAFISVLPMA 787
             +V+ +   K+++ Y               +LI  S  E      ++ +   +S +P+ 
Sbjct: 406 AAIVMIENAHKHLEAYDHDHPGTPITTAQRWELIATSAAEVGPALFFSLLIITLSFIPVF 465

Query: 788 VWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
              G     F   A    + I  AA  S+ +   ++ ++   R  +
Sbjct: 466 SLEGQEGKLFSPLAFTKTYTIAAAAGLSVTLVPVLMGYLIRGRIPH 511


>gi|300868690|ref|ZP_07113301.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
 gi|300333251|emb|CBN58493.1| conserved membrane hypothetical protein [Oscillatoria sp. PCC 6506]
          Length = 1071

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 71/566 (12%), Positives = 161/566 (28%), Gaps = 47/566 (8%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +   ++L   I  +GL         Q  +D  PS               G  L     
Sbjct: 16  RRHIGTIMLTLAIAVVGLFYI-----TQLPVDLLPSITYPRI---------GVRLEAPGI 61

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
             +     +    ++  S  +         R+ Q  + L F      +   +  T  +  
Sbjct: 62  SPEVAVDEITRPLEQGLSATEGVTQVFSRTREGQVSVDLFFKPGGNIDQALNDATAAVNR 121

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           + ++L    +   L      +  +   +  +       ++  +    +   ++ +     
Sbjct: 122 IRNQLPDTVEAPRLFKVDPSQQPV--YEFGLTSDSLRGVDLRVFADEELARELNVIPGLA 179

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
               S  +  ++    D +RL+ L    + +       N    G                
Sbjct: 180 AVDVSGGVQEEIQVNLDLNRLQALGVNVSDVLSTLQDRNQDTSGGRLQQESGEPLTRTIG 239

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
             ++  EI                 + +          +R +      +           
Sbjct: 240 RFQNASEI-----------------RDLSFQIAGSNPPKRVYIRDFAEVIDGTEEERVKV 282

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRA--GSLPIKLNIVEERNVGADLGSD 359
            L      +     +   +    ++        LR      P                S 
Sbjct: 283 FLNQTPAVKISIQKQPDANTITVVDGIKKRLEELRKSGVITPDMTITTTLDESRFIRDSI 342

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           S    +    + L  I + + +   +  L+   +I L  +  + L+ L   ++ + S+ G
Sbjct: 343 SNVLFSGLSGSVLAGIAVLLFLGSLRQTLIIVLAIPLATLTAIILMGLFHLSINIFSLGG 402

Query: 420 IVLGIGLAVDSNILVNERI---------REENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           + LG+G+ VD++I++ E I         +  N K  S+  + +       S +F S  T 
Sbjct: 403 LALGVGIVVDNSIVMLENIVEGVNKNKSKTTNGKRTSILDAAEKSSQELESALFASTATN 462

Query: 471 LIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           L+A +     GG          +T+  ++  S+   ++IV  M   ++  +    +    
Sbjct: 463 LVAVLPFLLIGGFISLLFNELILTITFAVAASLIVGLTIVPMMTSRLLAVRFSSGVGKFW 522

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGIS 553
             R F      A          +   
Sbjct: 523 ALRAFNRAFHSATLGYGRFLGAILRW 548



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/220 (12%), Positives = 87/220 (39%), Gaps = 12/220 (5%)

Query: 614  EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
             +  +  +        +    L+ V   ++E+     +Q       + ++EL     +  
Sbjct: 830  NQRQVFLIVGNLNKGASLGEALQQVDAVVSELKLPPGVQVVPSSAAETNQELQSSLKILG 889

Query: 674  IISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
             ++A  + + + +++      L  + T+ L +   +    +       T +   + L+G 
Sbjct: 890  GLAAFLVFVVMAVQYNSLVDPLVIMLTVPLSLAGGILGLYVTKTAIGATVIVGAILLVGI 949

Query: 733  SVNDKVVVYD---RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
             VN+ +++ +   ++R+        +  +  I ++  + L   + T++   + + P+A+ 
Sbjct: 950  VVNNAILMVELANQIREE-----EGVDRKTAIVRAAPQRLRPIMMTTITTVLGLFPLALG 1004

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
               G   +    + +  G+ +A   ++FI     + ++D+
Sbjct: 1005 IGDGSEFLQPLGVVVFSGLSLATVLTLFIIPCFYILLHDF 1044



 Score = 64.3 bits (154), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 85/249 (34%), Gaps = 19/249 (7%)

Query: 580 QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
              +  + P     +R   E +   +         +   V++  Q         V++ +K
Sbjct: 251 SFQIAGSNPPKRVYIRDFAEVIDGTEEERVKVFLNQTPAVKISIQKQPDANTITVVDGIK 310

Query: 640 KKITEI------VPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           K++ E+       P  TI  T      I   +      G+  S +A +  +         
Sbjct: 311 KRLEELRKSGVITPDMTITTTLDESRFIRDSISNVLFSGLSGSVLAGIAVLLFLGSLRQT 370

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT- 752
           L  +  + L     +    LF +  N+ ++  +   +G  V++ +V+ + + + +     
Sbjct: 371 LIIVLAIPLATLTAIILMGLFHLSINIFSLGGLALGVGIVVDNSIVMLENIVEGVNKNKS 430

Query: 753 -----TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG-------SVIGSFAIP 800
                   S  D  +KS  E       ++    ++VLP  + GG        +I +    
Sbjct: 431 KTTNGKRTSILDAAEKSSQELESALFASTATNLVAVLPFLLIGGFISLLFNELILTITFA 490

Query: 801 MAFGIVVAA 809
           +A  ++V  
Sbjct: 491 VAASLIVGL 499


>gi|228949158|ref|ZP_04111427.1| Swarming motility protein swrC [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810503|gb|EEM56855.1| Swarming motility protein swrC [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 1038

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 197/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKDALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   + ++       +  ++   M       ++     K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASSQGNQTAGAGAQMPQMNPAAMNGIPTVTLSEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 SEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|257468002|ref|ZP_05632098.1| protein translocase subunit secD [Fusobacterium ulcerans ATCC
           49185]
 gi|317062288|ref|ZP_07926773.1| translocase subunit secD [Fusobacterium ulcerans ATCC 49185]
 gi|313687964|gb|EFS24799.1| translocase subunit secD [Fusobacterium ulcerans ATCC 49185]
          Length = 410

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 142/372 (38%), Positives = 225/372 (60%), Gaps = 22/372 (5%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +    +    +   A+ + +E++ +RI+ +G++ES +Q+ GS+R++I+LPG  +    
Sbjct: 40  VVLEAVPDEGVTLDDAAMNRLIEVLDRRINGLGVAESLVQKAGSNRVIIELPGISNTEDA 99

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            +++G TA + F                        N      +  ++G  L  A  ++ 
Sbjct: 100 IKMIGKTALLEFKL---------------------ENPDGTLGETLLTGGALKKADVSY- 137

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +P +    ++ GA RF E+TR+NIG+ LA+ LDG+V TAP+IN  IPSG   I+GN
Sbjct: 138 DNLGRPQIQFEMNQEGAVRFAEITRNNIGRKLAITLDGKVQTAPMINSEIPSGNGVITGN 197

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           +T+E A   A +L AG+LP+K  IVE R VGA LG +SI +   A V  ++LI +FMIV 
Sbjct: 198 YTVEEAKATATLLNAGALPVKAEIVETRTVGASLGDESIAQSKQAGVFAMMLIGVFMIVF 257

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G+VAD ++ +  ++T   L+ + ATLTLP IAG++L  G+AVD+N+++ ERI+EE 
Sbjct: 258 YRLPGIVADIALVIFGLITFGCLNFIDATLTLPGIAGLILSAGMAVDANVIIFERIKEEL 317

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           R   +V  ++D GFS+ +  IFDSN+T LI TV+LF FG G V+GFA+T+ +  L SMFT
Sbjct: 318 RMGNTVRNAIDAGFSKGFVAIFDSNLTTLIITVILFTFGTGPVKGFAVTLTIGTLASMFT 377

Query: 503 AISIVRAMMIFI 514
           AI+I + +++  
Sbjct: 378 AITITKIILLTF 389



 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 31/241 (12%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V        ++ R    +L     +    + E      +               ++    
Sbjct: 155 VRFAEITRNNIGRKLAITLDGKVQTAPMINSEIPSGNGVITGNYTVEEAKATATLLNAGA 214

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             +           VG  +  E I +     + + + + +++ + ++    + A   L++
Sbjct: 215 LPVKAEIVETR--TVGASLGDESIAQSKQAGVFAMMLIGVFMIVFYRLP-GIVADIALVI 271

Query: 703 DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
               T G          L  +A ++   G +V+  V++++R+++ +++     + R+ ID
Sbjct: 272 FGLITFGCLNFIDATLTLPGIAGLILSAGMAVDANVIIFERIKEELRM---GNTVRNAID 328

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
              ++       +++   I  + +  +G   +  FA+ +  G + +  ++I I   ILL 
Sbjct: 329 AGFSKGFVAIFDSNLTTLIITVILFTFGTGPVKGFAVTLTIGTLASMFTAITITKIILLT 388

Query: 823 I 823
            
Sbjct: 389 F 389



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 18/129 (13%), Positives = 41/129 (31%), Gaps = 21/129 (16%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD-- 64
            + L  ++    + ++                       LGLDL+GG ++VLE   D+  
Sbjct: 8   RLSLVIVVVIGAIWLSFF-----------------KPTKLGLDLKGGVYVVLEAVPDEGV 50

Query: 65  -FVNGFLQMYSDELRSFLKKEGIGVFSMRQ-IQNKITLSFADSRFKENIADKVTLFLQGV 122
              +  +    + L   +   G+    +++   N++ +        E+    +       
Sbjct: 51  TLDDAAMNRLIEVLDRRINGLGVAESLVQKAGSNRVIIELPGISNTEDAIKMIGKTALLE 110

Query: 123 NSKLNVDPK 131
               N D  
Sbjct: 111 FKLENPDGT 119


>gi|41409735|ref|NP_962571.1| MmpL11 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41398567|gb|AAS06187.1| MmpL11 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 1007

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 71/523 (13%), Positives = 174/523 (33%), Gaps = 68/523 (13%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL---PSIAGIVLGI 424
               ++LIVL  +        +        V++T+ L+ LL A  T+    +    + GI
Sbjct: 182 WNLPVILIVLLAVFGSLAAAAIPLALGICTVVVTMGLVYLLSAYTTMSVFVTSTVSMFGI 241

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            LAVD ++ +  R REE R  +    ++D   + +   +  S +T + +   ++     A
Sbjct: 242 ALAVDYSLFILMRFREELRSGRQPREAVDAAMATSGLAVVLSGMTVIASLTGIYVINTPA 301

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMR 544
           ++  A    L++ ++M T+ ++  A +    R    +S  ++   R          +++ 
Sbjct: 302 LKSMATGAILAVAVAMLTSTTLTPAALATFGRAAAKRSALLHWSRRPESTQSKFWNRWIG 361

Query: 545 ARFWGVGISILFSICSICLLFTHGLNY---------------------------GIDFKG 577
                  +S L +   + ++     +                            G    G
Sbjct: 362 WVMRRPWMSALAASLVLLVMAAPAASMVLGNSLLRQFDSSHEIRAGVGAAAQALGPGALG 421

Query: 578 GIQLGVLANR----------PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD 627
            I++ +               V     R       +     Q  +   + L+        
Sbjct: 422 PIRVLINFPDGGAASPEHSHTVGAVRQRMAQAPNIVSVSPPQFAEDNGSALLSAVLSVDP 481

Query: 628 SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VIISAIAMLIYI 684
              + R      +     VP +     ++ GP    +     +     +++  +A++ ++
Sbjct: 482 EDMKARETVGWMRAELPKVPEAGTARVDVGGPTALIKDFDDRVSATEPLVLGFVALIAFV 541

Query: 685 WIR---FKWYFALGAITTLILDITKT---------------LGFFALFGIEFNLTAVAAV 726
            +       + AL  +   +L +                  LGF  +  I+  +  +  +
Sbjct: 542 MLLVSIHSVFLALKGVLMTLLSVAAAYGSLVMVFQWGWLRDLGFAQISSIDSTVPPL-VL 600

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
               G S++ ++ +  R+R+    +  S + RD +   +  T  R++ ++     +V   
Sbjct: 601 AMTFGLSMDYEIFLLTRIRE---RFLHSGNTRDAVAYGV-STSARTITSAALIMSAVFVG 656

Query: 787 AVW-GGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
             + G  ++    +  A  I V      + +   ++     W 
Sbjct: 657 FAFAGMPLVAEIGVACAVAIAVDATVVRLVMVPALMAMFAQWN 699


>gi|15607343|ref|NP_214716.1| transmembrane transport protein MmpL11 [Mycobacterium tuberculosis
           H37Rv]
 gi|15839582|ref|NP_334619.1| membrane protein MmpL11 [Mycobacterium tuberculosis CDC1551]
 gi|31791380|ref|NP_853873.1| transmembrane transport protein MmpL11 [Mycobacterium bovis
           AF2122/97]
 gi|121636114|ref|YP_976337.1| putative transmembrane transport protein mmpL11 [Mycobacterium
           bovis BCG str. Pasteur 1173P2]
 gi|148659966|ref|YP_001281489.1| membrane protein MmpL11 [Mycobacterium tuberculosis H37Ra]
 gi|148821395|ref|YP_001286149.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           F11]
 gi|215414067|ref|ZP_03422726.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           94_M4241A]
 gi|215425408|ref|ZP_03423327.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           T92]
 gi|215433122|ref|ZP_03431041.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           EAS054]
 gi|215448481|ref|ZP_03435233.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           T85]
 gi|218755939|ref|ZP_03534735.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           GM 1503]
 gi|224988587|ref|YP_002643274.1| putative transmembrane transport protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253797124|ref|YP_003030125.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis KZN
           1435]
 gi|254233589|ref|ZP_04926915.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           C]
 gi|254366653|ref|ZP_04982697.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254549141|ref|ZP_05139588.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260199204|ref|ZP_05766695.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis T46]
 gi|289441578|ref|ZP_06431322.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis T46]
 gi|289748678|ref|ZP_06508056.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis T92]
 gi|289756266|ref|ZP_06515644.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           EAS054]
 gi|289760305|ref|ZP_06519683.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis T85]
 gi|289764318|ref|ZP_06523696.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           GM 1503]
 gi|294994675|ref|ZP_06800366.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis 210]
 gi|297632682|ref|ZP_06950462.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis KZN
           4207]
 gi|297729656|ref|ZP_06958774.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis KZN
           R506]
 gi|298527594|ref|ZP_07015003.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306787192|ref|ZP_07425514.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           SUMu004]
 gi|306791747|ref|ZP_07430049.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           SUMu005]
 gi|306801786|ref|ZP_07438454.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           SUMu008]
 gi|306805999|ref|ZP_07442667.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           SUMu007]
 gi|313656982|ref|ZP_07813862.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis KZN
           V2475]
 gi|54037800|sp|P65375|MMPLB_MYCBO RecName: Full=Putative membrane protein mmpL11
 gi|54041464|sp|P65374|MMPLB_MYCTU RecName: Full=Putative membrane protein mmpL11
 gi|2909600|emb|CAA17324.1| PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL11
           [Mycobacterium tuberculosis H37Rv]
 gi|13879696|gb|AAK44433.1| membrane protein MmpL11 [Mycobacterium tuberculosis CDC1551]
 gi|31616965|emb|CAD93072.1| PROBABLE CONSERVED TRANSMEMBRANE TRANSPORT PROTEIN MMPL11
           [Mycobacterium bovis AF2122/97]
 gi|121491761|emb|CAL70223.1| Probable conserved transmembrane transport protein mmpL11
           [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|124603382|gb|EAY61657.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           C]
 gi|134152165|gb|EBA44210.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148504118|gb|ABQ71927.1| membrane protein MmpL11 [Mycobacterium tuberculosis H37Ra]
 gi|148719922|gb|ABR04547.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           F11]
 gi|224771700|dbj|BAH24506.1| putative transmembrane transport protein [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253318627|gb|ACT23230.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis KZN
           1435]
 gi|289414497|gb|EFD11737.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis T46]
 gi|289689265|gb|EFD56694.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis T92]
 gi|289696853|gb|EFD64282.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           EAS054]
 gi|289711824|gb|EFD75840.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           GM 1503]
 gi|289715869|gb|EFD79881.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis T85]
 gi|298497388|gb|EFI32682.1| conserved hypothetical protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308336095|gb|EFP24946.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           SUMu004]
 gi|308339726|gb|EFP28577.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           SUMu005]
 gi|308347452|gb|EFP36303.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           SUMu007]
 gi|308351502|gb|EFP40353.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           SUMu008]
 gi|323717191|gb|EGB26400.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905957|gb|EGE52890.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis W-148]
 gi|328456911|gb|AEB02334.1| transmembrane transporter mmpL11 [Mycobacterium tuberculosis KZN
           4207]
          Length = 966

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 63/532 (11%), Positives = 163/532 (30%), Gaps = 63/532 (11%)

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                 +  +     +  +VL+ +F  +      L       +  +  + +LS+      
Sbjct: 173 NTKHDIANAERWNLPIILMVLVAVFGSLAAAAIPLALAVCTVVITMGLVFVLSMHTTMSV 232

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             +    + GI LAVD ++ +  R REE R  +    ++D   + +   +  S +T + +
Sbjct: 233 FVTSTVSMFGIALAVDYSLFILMRYREELRCGRRPPDAVDAAMATSGLAVVLSGMTVIAS 292

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDINPLS 529
              ++     A+R  A    L++ ++M T+ ++  A++    R    +         P S
Sbjct: 293 LTGIYLINTPALRSMATGAILAVAVAMLTSATLTPAVLATFARAAAKRSALVHWSRRPAS 352

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA---- 585
                        MR  +     +    +          L   +  +      +      
Sbjct: 353 TQSWFWSRWVGWVMRRPWITALAASTVLLVMAAPATLMVLGNSLLRQFDSSHEIRTGAAA 412

Query: 586 ---------------------------NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                                           ++ +R  +               + N  
Sbjct: 413 AAQALGPGALGPVQVLVRFDAGGASAPEHSQTIAAIRHRIAQAPNVVSVAPPRFADDNGS 472

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VII 675
             L              + +    T++  ++     ++ GP    +     +     +++
Sbjct: 473 ALLSAVLSVDPEDLGARDTITWMRTQLPRVAGAAQVDVGGPTALIKDFDDRVSATQPLVL 532

Query: 676 SAIAMLIYIWIRFKWY---FALGAITTLILDITKT---------------LGFFALFGIE 717
             +A++ ++ +         A   +   +L +                  LGF AL  I+
Sbjct: 533 VFVAVIAFLMLLISIRSVFLAFKGVLMTLLSVAAAYGSLVMVFQWGWARGLGFPALHSID 592

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             +  +  +    G S++ ++ +  R+R+    +  +   RD +   +  T  R++ ++ 
Sbjct: 593 STVPPL-VLAMTFGLSMDYEIFLLTRIRE---RFLQTGQTRDAVAYGV-RTSARTITSAA 647

Query: 778 AAFISVLPMAVW-GGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
              I+V     + G  ++    +  A  I V      + +   ++     W 
Sbjct: 648 LIMIAVFCGFAFAGMPLVAEIGVACAVAIAVDATVVRLVLVPALMAMFDRWN 699



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 61/159 (38%), Gaps = 6/159 (3%)

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIG--YSV 734
           I +++ + +      A   +   +  +  T+G   +  +   ++  V + +++ G   +V
Sbjct: 188 IILMVLVAVFGSLAAAAIPLALAVCTVVITMGLVFVLSMHTTMSVFVTSTVSMFGIALAV 247

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  + +  R R+ ++         D +D ++  +    V + M    S+  + +     +
Sbjct: 248 DYSLFILMRYREELRCGRR---PPDAVDAAMATSGLAVVLSGMTVIASLTGIYLINTPAL 304

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            S A      + VA  +S  +   +L       AK + +
Sbjct: 305 RSMATGAILAVAVAMLTSATLTPAVLATFARAAAKRSAL 343


>gi|299768525|ref|YP_003730551.1| putative silver efflux pump [Acinetobacter sp. DR1]
 gi|298698613|gb|ADI89178.1| putative silver efflux pump [Acinetobacter sp. DR1]
          Length = 1052

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 62/616 (10%), Positives = 161/616 (26%), Gaps = 60/616 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N  W+++       +G+         +  +D  P                   +  + +
Sbjct: 24  QNAIWVMLFVLTWIGVGIWS-----YQKLPIDAVPDITNTQ-----------VQINTQAN 67

Query: 62  EDDF--VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
                 V   +    +   + +          R   +++T+ F D          +   L
Sbjct: 68  GYTALEVEQRITYPIENAMAGIPNLEQTRSISRYGLSQVTIIFKDGTDIYWARQLINQRL 127

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRIDQ 173
           Q  + +L       +   +T                   D     A++           Q
Sbjct: 128 QEADGQLPESVDPVMSPVSTGLGEIYQWVVKAKSGAKKADGTAYTAMDLREIQDWIVRPQ 187

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
           +   +   +               D  RL+QL  +  +        N ++          
Sbjct: 188 LQRVKGVAEINSIGGYNKTYIVSPDLKRLQQLQISINEFQTALQENNENRGAGFIEENGE 247

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
           + +     ++    +I                     +I+               N+   
Sbjct: 248 QLTVRVPGMLSSVEDIQ--------------------NITVSTKNGLPIRVADVANVSIG 287

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
             +               I       +     +        ++                 
Sbjct: 288 HDLRTGAATYNGEETVLGIAMMMMGENSRTVAQAVDTKIKEIQPTLPKGVEIETVYDRTS 347

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               + +  +      A LV+++LF+ +   +  L+    I L+++ TL  ++    +  
Sbjct: 348 LVNKAIATVQKNLVEGAILVIVILFIFLGNFRAALITACVIPLSMLFTLTGMAEQNISAN 407

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQS----------VFCSLDMGFSRAYSTI 463
           L S+  +  GI   VD  +++ E       + Q            F  + +   +A   +
Sbjct: 408 LMSLGALDFGII--VDGAVVIVENCIRRLAEAQHALHRPLTRAERFKEVFLAAKQARRPL 465

Query: 464 FDSNITALIATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
               +  L+  + +F   G         A+T+ +++L +M  +++ V A +   +  +  
Sbjct: 466 IFGQMIILVVYLPIFALSGVEAKMFHPMAMTVVMALLGAMILSVTFVPAAVALFVTGEVK 525

Query: 521 KSIDINPLSRFFLIPDCI-AIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
           +      L       D +     ++       +SIL     +           +      
Sbjct: 526 EKETRWMLLLKQKYRDVLDQAYQLKIVVVSFALSILVLTGVLATQMGSEFAPQLSEGDFA 585

Query: 580 QLGVLANRPVDLSVVR 595
              + +        +R
Sbjct: 586 LQQMRSPSTGLEQSLR 601



 Score = 48.1 bits (112), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/251 (11%), Positives = 76/251 (30%), Gaps = 35/251 (13%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++  ++      Q         V +          + V E+      E +P        
Sbjct: 815  QDVAKVERTSGLNQVGRENGKRRVIITANVEGRDLGSFVQELRTTLAKEQLPAGYWLEYG 874

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                 ++    R   + V ++   + I +               +  ++ ++L  F+   
Sbjct: 875  GQFENLASAAAR-MKIVVPLALAMIFILLM-------------AVFHNVKESLLVFSGVP 920

Query: 716  IEFNLTAVA--------------AVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
               +   +A                + L G +V + +V+   +++           +   
Sbjct: 921  FALSGGLIALWLRDIPLSMSAGVGFIALSGVAVLNGLVMLSFIKE----LREKFDIQTAT 976

Query: 762  DKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAP 818
                   L   + T+  A +  +PMA+    G  V    A  +  GI+ +   ++ +   
Sbjct: 977  WNGAILRLRPVLMTACVASLGFIPMALATGTGAEVQRPLATVVIGGIISSTILTLVLLPV 1036

Query: 819  ILLFIYDWRAK 829
            I  ++ + + K
Sbjct: 1037 IYRWMNEGKTK 1047


>gi|270262868|ref|ZP_06191139.1| putative cation efflux system protein SilA [Serratia odorifera
           4Rx13]
 gi|270043552|gb|EFA16645.1| putative cation efflux system protein SilA [Serratia odorifera
           4Rx13]
          Length = 1039

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 62/541 (11%), Positives = 136/541 (25%), Gaps = 43/541 (7%)

Query: 27  LPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGI 86
           L ++ LD  P       I                     +   +          +     
Sbjct: 31  LQKAPLDALPDLSDVQVI---------VRATYPGKAPQVIEDQVTYPLTTTLLTVPGAKT 81

Query: 87  GVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIV 146
                      + + F D         +V   L  V S L    K  L    T       
Sbjct: 82  VRGFSMFGDAYVYVLFEDGTDLYWARSRVLEALSQVQSSLPAQVKVALGPDATGVGWVYE 141

Query: 147 LSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLL 206
                         +           ++    +  +      ++ Q     DPS LR L 
Sbjct: 142 Y-ALVDKSGKHSLADLRALQDWTLKFELKTVPNVAEVASVGGMVRQYQVVLDPSSLRALN 200

Query: 207 GTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTH 266
            T  ++       N    G +  +            ++ + +                  
Sbjct: 201 ITHQQVVSAIQDANQEGGGAVLEMGEAEYMVRTSGYLKKRSD------------------ 242

Query: 267 KPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIE 326
                +     G              P        +     +   I   +   +   TI 
Sbjct: 243 -FANVVITVRDGVPILLSQVATLREGPEIRRGVAELNGEGEVAGGIVVMRYGKNALETIN 301

Query: 327 TAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKW 386
              +    ++    P    +           +             +V +V  + + + + 
Sbjct: 302 ALKVKLQEVQQTLPPGVEIVTVYDRSQLIEHAIETLSHKLLEEFLVVALVCTLFLFHFRS 361

Query: 387 GLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILV-------NERIR 439
            LVA  ++ L ++    ++   G    + S+ GI + IG  VD+ I++        E+ R
Sbjct: 362 ALVAMITLPLGILGAFVVMHYQGVNANIMSLGGIAIAIGAMVDAAIVMIENMHKVLEQWR 421

Query: 440 EENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF-------GGGAVRGFAITM 492
           + +   Q           +A   +  +   +L+   + F          G      A T 
Sbjct: 422 QRHPGQQPTSTDYWRISEQAAVEVGPALFCSLLIITLSFIPVFTLQAQEGRMFSPLAYTK 481

Query: 493 GLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGI 552
             ++ ++    I++V  +M + IR +               +   +    +      +G+
Sbjct: 482 TYAMAVAAGLGITLVPVLMGYFIRGRIPDEHANPINRWLIRLYQPVLAAVLAWPKTTLGV 541

Query: 553 S 553
           S
Sbjct: 542 S 542



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/134 (15%), Positives = 51/134 (38%), Gaps = 12/134 (8%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++++ +  L      F +  AL A+ TL L I          G+  N+ ++  +   IG 
Sbjct: 346 LVVALVCTL----FLFHFRSALVAMITLPLGILGAFVVMHYQGVNANIMSLGGIAIAIGA 401

Query: 733 SVNDKVVV---YDRMRKNMKLY-----TTSISFRDLIDKSINETLGRSVYTSMAAFISVL 784
            V+  +V+     ++ +  +        TS  +  + +++  E       + +   +S +
Sbjct: 402 MVDAAIVMIENMHKVLEQWRQRHPGQQPTSTDYWRISEQAAVEVGPALFCSLLIITLSFI 461

Query: 785 PMAVWGGSVIGSFA 798
           P+          F+
Sbjct: 462 PVFTLQAQEGRMFS 475



 Score = 45.5 bits (105), Expect = 0.038,   Method: Composition-based stats.
 Identities = 35/236 (14%), Positives = 77/236 (32%), Gaps = 12/236 (5%)

Query: 587  RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
              V LS++     +     +  +N        V L+ +   S  +     + ++      
Sbjct: 793  GQVPLSMLADIRVTEGPPMLKSENARLSNWIYVDLRGRDLKSAVEEMQRAVAQQVKLPAG 852

Query: 647  PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK 706
               +         + S +L  K ++ V ++ I +L+++        AL  + TL   +  
Sbjct: 853  VSLSWSGQFEYLERASAQL--KIVLPVTLAIIFVLLFVTFS-SVRDALLIMATLPFALIG 909

Query: 707  TLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTT---SISFRDL 760
             +    L     ++      + L G +    V++    +   +  +            D 
Sbjct: 910  GVWLLYLLNYNLSVAGAVGFIALAGVAAEFGVIMVLYLNHALEKHRQPGKPLTRKQLMDA 969

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSI 813
            I +     +   V T       +LP+      G  V+   A PM  G++ A   S+
Sbjct: 970  IAEGAVLRVRPKVMTVATIMAGLLPIMWGNGAGSEVMRRIAAPMIGGMLSAPLLSM 1025


>gi|215406195|ref|ZP_03418376.1| transmembrane transport protein mmpL11 [Mycobacterium tuberculosis
           02_1987]
 gi|289747969|ref|ZP_06507347.1| membrane protein MmpL11 [Mycobacterium tuberculosis 02_1987]
 gi|289688497|gb|EFD55985.1| membrane protein MmpL11 [Mycobacterium tuberculosis 02_1987]
          Length = 966

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 63/532 (11%), Positives = 164/532 (30%), Gaps = 63/532 (11%)

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
                 +  +     +  +VL+ +F  +      L       +  +  + +LS+      
Sbjct: 173 NTKHDIANAERWNLPIILMVLVAVFGSLAAAAIPLALAVCTVVITMGLVFVLSMHTTMSV 232

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIA 473
             +    + GI LAVD ++ +  R REE R  +    ++D   + +   +  S +T + +
Sbjct: 233 FVTSTVSMFGIALAVDYSLFILMRYREELRCGRRPPDAVDAAMATSGLAVVLSGMTVIAS 292

Query: 474 TVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDINPLS 529
              ++     A+R  A    L++ ++M T+ ++  A++    R    +         P S
Sbjct: 293 LTGIYLINTPALRSMATGAILAVAVAMLTSATLTPAVLATFARAAAKRSALVHWSRRPAS 352

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA---- 585
                        MR  +     +    +          L   +  +      +      
Sbjct: 353 TQSWFWSRWVGWVMRRPWITALAASTVLLVMAAPATLMVLGNSLLRQFDSSHEIRTGAAA 412

Query: 586 ---------------------------NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
                                           ++ +R  +               + N  
Sbjct: 413 AAQALGPGALGPVQVLVRFDAGGASAPEHSQTIAAIRHRIAQAPNVVSVAPPRFADDNGS 472

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG---VII 675
             L              + +    T++  ++     ++ GP    + +   +     +++
Sbjct: 473 ALLSAVLSVDPEDLGARDTITWMRTQLPRVAGAAQVDVGGPTALIKDLDDRVSATQPLVL 532

Query: 676 SAIAMLIYIWIRFKWY---FALGAITTLILDITKT---------------LGFFALFGIE 717
             +A++ ++ +         A   +   +L +                  LGF AL  I+
Sbjct: 533 VFVAVIAFLMLLISIRSVFLAFKGVLMTLLSVAAAYGSLVMVFQWGWARGLGFPALHSID 592

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             +  +  +    G S++ ++ +  R+R+    +  +   RD +   +  T  R++ ++ 
Sbjct: 593 STVPPL-VLAMTFGLSMDYEIFLLTRIRE---RFLQTGQTRDAVAYGV-RTSARTITSAA 647

Query: 778 AAFISVLPMAVW-GGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
              I+V     + G  ++    +  A  I V      + +   ++     W 
Sbjct: 648 LIMIAVFCGFAFAGMPLVAEIGVACAVAIAVDATVVRLVLVPALMAMFDRWN 699



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 22/159 (13%), Positives = 61/159 (38%), Gaps = 6/159 (3%)

Query: 678 IAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLT-AVAAVLTLIG--YSV 734
           I +++ + +      A   +   +  +  T+G   +  +   ++  V + +++ G   +V
Sbjct: 188 IILMVLVAVFGSLAAAAIPLALAVCTVVITMGLVFVLSMHTTMSVFVTSTVSMFGIALAV 247

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVI 794
           +  + +  R R+ ++         D +D ++  +    V + M    S+  + +     +
Sbjct: 248 DYSLFILMRYREELRCGRR---PPDAVDAAMATSGLAVVLSGMTVIASLTGIYLINTPAL 304

Query: 795 GSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            S A      + VA  +S  +   +L       AK + +
Sbjct: 305 RSMATGAILAVAVAMLTSATLTPAVLATFARAAAKRSAL 343


>gi|328541888|ref|YP_004301997.1| Acriflavin resistance protein [polymorphum gilvum SL003B-26A1]
 gi|326411639|gb|ADZ68702.1| Acriflavin resistance protein [Polymorphum gilvum SL003B-26A1]
          Length = 1101

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/673 (10%), Positives = 186/673 (27%), Gaps = 35/673 (5%)

Query: 4   NPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDED 63
           +   ++    +  +G++  L     Q+  +  P  +                + L     
Sbjct: 19  SKMTIVFIIAVALMGVVAVL-----QTPREENPQIVVPAA---------AVTVTLPGASA 64

Query: 64  DFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             V   L    + +   +        + +     + + F     +E    K+   +    
Sbjct: 65  AEVEQLLVTPLEGILKEIPGVDHIESTAQNSAAIVQVQFKVGEPREESLVKLYDRVLASR 124

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
           S+L  D     + +    ++ IV           +A+++   +  +  +++  +E+    
Sbjct: 125 SRLPSDAGTPQVQSVDADDVPIVTFTLASSDYDDYALKR---VAERMAERLRSTENVSVV 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
                   ++  E DP RL+    T ++        N S            ++       
Sbjct: 182 SIKGGREREIAIELDPDRLQAFGVTLSQAYSAFTASNLSVPLQPTVRDGEVEAIKLSASF 241

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
               ++    +  +            V               +R + G   A V +    
Sbjct: 242 ASAEDVRNQIVAVSNGRPVYVRDVATVTDGPPSE----IMAFSRFSFGPGDARVNEANAR 297

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
             P +  A+   K   +          +  M  +        +V   +      + ++  
Sbjct: 298 DMPAVTIAVAKKKGANAVVVANAVIDRVERMQASFVPKDIQVVVTRDDGEKADAAVNLLL 357

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
               +  G V +VL +  L  +  ++   ++ L + +TL    L G T+   ++  ++L 
Sbjct: 358 EHLLVALGTVGLVL-IFFLGWREAMIVMVTVPLILSITLLADLLGGVTINRVTLFALILA 416

Query: 424 IGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF- 479
           +GL VD+ I+V E I       +          +  +   +    +    ++    LF  
Sbjct: 417 LGLLVDAAIVVIENIHRHYGSAKAGADKQAITILATNEIGNATNLATFAVMLVFAALFLV 476

Query: 480 --FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYK-------KMKSIDINPLSR 530
               G      A  + +++  S+  A  +        +            + +      R
Sbjct: 477 TGMAGDYFYPIAFNVPVAMAASVVVAYIVTPWAANRWLHRHDVQEEEAHAEEVSHGEPGR 536

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
              +   +     + R   +   ++  +            +      G  +  L      
Sbjct: 537 MERLYLRLFAPLQQRRPVRLCFGLVIVVLMAASAMQGAWQFVRPSGVGGPVSYLGVPIGF 596

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLST 650
           L     N  ++ +        +    F+  +  +             + +   E      
Sbjct: 597 LPKDNKNTFNIVVSMPENTPVEETDRFVREIATELVKEPEVVNYQTWIGQAGVEDFNGLF 656

Query: 651 IQNTEIVGPKISR 663
                 +G  ++ 
Sbjct: 657 KGTAGRIGNHVAE 669



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/199 (15%), Positives = 83/199 (41%), Gaps = 13/199 (6%)

Query: 637  MVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-LIYIWIRFKWYFALG 695
             +         +   Q       +++ ++ R   + +  + +A+  + +     +   + 
Sbjct: 902  NLGFNEDVPDTIDGYQLLWGGEMRMTLDVYRDMGIALGGALLAVYFLLVAYYRSFLIPMI 961

Query: 696  AITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSI 755
            A++++ L +        L G +F+ T++  ++ L G  + + +++ D ++ N++    S+
Sbjct: 962  AMSSVPLGVIGIFPGHWLVGADFSATSMVGIIALSGVVIRNSLLIIDFIQDNLR---HSM 1018

Query: 756  SFRDLIDKSINETLGRSVYTSMAAFISVLPMA---VWGGSVIGSFAIPMAFGIVVAASSS 812
                   ++    L   + T++A  +    M    V+GG      AI + FG VV+ + +
Sbjct: 1019 PLDVATRQAGAVRLRPILLTTLAIILGSAIMVTDPVFGG-----LAISLIFGTVVSTALT 1073

Query: 813  IFIAAPILLFIYDWRAKNA 831
            +F+  P+L  +   R    
Sbjct: 1074 VFVV-PVLYELDARRRLRR 1091



 Score = 61.6 bits (147), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 45/112 (40%)

Query: 680 MLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
           + + +     W  A+  + T+ L ++ TL    L G+  N   + A++  +G  V+  +V
Sbjct: 367 VGLVLIFFLGWREAMIVMVTVPLILSITLLADLLGGVTINRVTLFALILALGLLVDAAIV 426

Query: 740 VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
           V + + ++          + +   + NE    +   + A  +    + +  G
Sbjct: 427 VIENIHRHYGSAKAGADKQAITILATNEIGNATNLATFAVMLVFAALFLVTG 478


>gi|320014397|gb|ADV97968.1| putative aminoglycoside efflux pump [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 267

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 27/252 (10%), Positives = 69/252 (27%), Gaps = 24/252 (9%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
              +  +L  ++C  G L           ++++P+  P              ++ +    
Sbjct: 8   RPIFAWVLAIILCLTGALAI-----STLPVEQYPNLAPP-------------NVRISASY 49

Query: 63  DDFVNGFLQMYS-DELRSFLKKEG----IGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                  L+      +   +        +   S       +TL+F           +V  
Sbjct: 50  PGASAQTLENTVTQVIEQSMTGLDNLLYMSSQSSNSGSASVTLTFQAGTNPNEAMQQVQN 109

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            LQ    +L  D ++  +  +   + ++++             + S  +     D +   
Sbjct: 110 QLQSAIKRLPQDVQQQGVSVSKSGDNTLMMVAFVSTDGSMDKQDISDYVASNLQDPLSRI 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E              +    DP++L     TT+ +       N        G     D+ 
Sbjct: 170 EGVGSVDAFGSQ-YAMRIWLDPNKLTNYQLTTSDIVSAIQSQNTQVAVGQLGGTPAVDNQ 228

Query: 238 GNQYLVEDKVEI 249
                +  + ++
Sbjct: 229 ALNATINAQSQL 240


>gi|87119618|ref|ZP_01075515.1| Co/Zn/Cd efflux system membrane component [Marinomonas sp. MED121]
 gi|86165094|gb|EAQ66362.1| Co/Zn/Cd efflux system membrane component [Marinomonas sp. MED121]
          Length = 1044

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 68/550 (12%), Positives = 154/550 (28%), Gaps = 27/550 (4%)

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          +              + + + F D         +V  +L 
Sbjct: 56  QAPQVVEDQVTYPLTTAMLSVPGAQTVRGYSFFGDSYVYVIFDDDTDMYWARSRVLEYLS 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L  + +  L    T     I L             +           ++      
Sbjct: 116 QVAPSLPANARSQLGPDATGVGW-IYLYALVDKTGQHDLSQLRSLQDWFLKYELQTVPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +      ++ Q   + DP +LR      A +       N      +  +          
Sbjct: 175 SEVATVGGMVKQYQVKVDPDKLRAFDMPLAHIQQAIKRGNQEVGASVIEMAEAEYMVRTS 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   ++                   ++ +  ++ G         D    P       
Sbjct: 235 GYIQGVKDLE------------------LLPLGVNKQGTPLLLRDVADIQVGPQMRRGVA 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            +         +   +   +   TI+        L+A        +      G    +  
Sbjct: 277 ELDGEGETVGGVIVMRFGENAQTTIQGVKSKLESLKASLPDGVEVVTVYDRSGLIESAVQ 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                 A    +V IV  + + + +  LVA FS+ + ++    +++L G    + S+ GI
Sbjct: 337 NLWEKLAEELAVVAIVCVIFLFHVRSSLVAVFSLPVGILAAFIIMNLQGINANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREENRK----NQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
            + IG  +D  I++ E + +   K     ++ +  +    S     +F S +   ++ V 
Sbjct: 397 AIAIGAMIDGAIVMIENMHKHMEKTPLTKENRWQIVAQSASEVGPALFFSLLIITVSFVP 456

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           +F      G      A T   ++  S   A+++V  +M + IR K +             
Sbjct: 457 VFTLEAQEGKMFAPLAYTKTYAMAASALLAVTLVPVLMGYFIRGKILPEHKNPVNRLLTF 516

Query: 534 IPDCIAIQFMRARFWGVGISILFSICSICLLF-THGLNYGIDFKGGIQLGVLANRPVDLS 592
           +   +    +      + +S++     I  L            +G +         V ++
Sbjct: 517 LYLPVLKTVLAYPKSTLALSLVVFAVGIWPLDKLGSEFIPPLDEGDLMYMPTTYPSVSIA 576

Query: 593 VVRSNLESLQ 602
             R  L+   
Sbjct: 577 QARQILQQSN 586



 Score = 55.5 bits (131), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 96/285 (33%), Gaps = 9/285 (3%)

Query: 554 ILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDG 613
                 +          Y    K    L +  N+     ++R   +      +     + 
Sbjct: 219 ASVIEMAEAEYMVRTSGYIQGVKDLELLPLGVNKQGTPLLLRDVADIQVGPQMRRGVAEL 278

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGV 673
           +                  +      K   E +  S     E+V       LI   +  +
Sbjct: 279 DGEGETVGGVIVMRFGENAQTTIQGVKSKLESLKASLPDGVEVVTVYDRSGLIESAVQNL 338

Query: 674 I------ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
                  ++ +A++  I   F    +L A+ +L + I        L GI  N+ ++  + 
Sbjct: 339 WEKLAEELAVVAIVCVI-FLFHVRSSLVAVFSLPVGILAAFIIMNLQGINANIMSLGGIA 397

Query: 728 TLIGYSVNDKVVVYDRMRKNMKLYT-TSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
             IG  ++  +V+ + M K+M+    T  +   ++ +S +E      ++ +   +S +P+
Sbjct: 398 IAIGAMIDGAIVMIENMHKHMEKTPLTKENRWQIVAQSASEVGPALFFSLLIITVSFVPV 457

Query: 787 AVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                     FA P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 458 FTLEAQEGKMFA-PLAYTKTYAMAASALLAVTLVPVLMGYFIRGK 501



 Score = 43.5 bits (100), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 13/147 (8%)

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM----------RK 746
            + TL + I  +L    L G  F++      + L G +V   V++   +            
Sbjct: 894  VGTLPMAIIGSLWLMYLEGYNFSVAVGVGFIALAGVAVEIGVIMLVYLNQAYQAMLTKHA 953

Query: 747  NMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAF 803
              +   + ++ R  +       +   + T+    + +LP+      G  V+   A PM  
Sbjct: 954  EQQQNPSVLALRQAVLDGAGLRVRPVMMTAATIIVGLLPIMYGTGTGSEVMSRIAAPMVG 1013

Query: 804  GIVVAASSSIFIAAPILLFIYDWRAKN 830
            G++ A   ++ +   +         + 
Sbjct: 1014 GMISAVILTLLVLPVVYFLWRKHSIQK 1040


>gi|207738677|ref|YP_002257070.1| transport protein [Ralstonia solanacearum IPO1609]
 gi|206592045|emb|CAQ58951.1| transport protein [Ralstonia solanacearum IPO1609]
          Length = 1068

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 78/639 (12%), Positives = 170/639 (26%), Gaps = 47/639 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSA-MPKNRI---SLGLDLRGGSHL 56
           +R          ++  + +L+A P  L +   D FP   +P   I     GL        
Sbjct: 8   LRRPLT-----FIVLALLILLATPFVLMRMATDIFPEIDIPVCSIIWNYNGLP------- 55

Query: 57  VLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVT 116
                  +  +  + +    L + +                I + F  +   +    ++ 
Sbjct: 56  -----AKEMADRIVSVTERSLTTTVNDIEHIESQSLNGVAIIKVFFQPTANIQTALAQIV 110

Query: 117 LFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
              Q    +L       L++  +   I I+    +   +     E +   +     ++  
Sbjct: 111 SVSQAQLRQLPPGITPPLVIKYSASSIPILQLGLSSTTLSEQ--ELNDAALNFLRPRLIT 168

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                          Q+  + D  +L     T   +       N         +     +
Sbjct: 169 VPGIAVPFPYGGKSRQITVDLDTQKLLAQGLTPTDIVNAVSAQNLILPAGTQKIDASEYA 228

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                      +++                     +                N+    + 
Sbjct: 229 VALNGTPGTIAQLNA--------------------MPVRTSNGATLVLGDVANVRDGFSP 268

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
             +                    S    +     L  +  A                   
Sbjct: 269 QTNVVRQDGQRGVLLSILKNGGASTLDIVNNLYKLLPVASAALPQDIKITPLFDQSLFVK 328

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +         I A L   ++ + +   +   +   SI L+++ ++ +L LLG T+ L +
Sbjct: 329 AAIEGVIREALIAACLTAAMILLFLGNWRSTAIIAVSIPLSILSSIIVLHLLGETINLMT 388

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           + G+ L +G+ VD   +  E I     + +    ++  G +      F S I   I  V 
Sbjct: 389 LGGLALAVGILVDDATVTIENIERHLHEGKEPVTAILDGAAEIAVPAFVSTICICIVFVP 448

Query: 477 LFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK-SIDINPLSRFF 532
           +FF  G         A  +  ++L S   + ++V  +++ ++             LS F 
Sbjct: 449 MFFLTGVARYLFVPMAEAVIFAMLASYVLSRTLVPTLVMMLMTGHTEDAKKPGRGLSTFR 508

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLS 592
            I      QF   R     I             +            + LG      VD  
Sbjct: 509 RIYLAFNAQFEHMRGNYAAILGGLLERRRAFAMSFLGFCVASCALYLVLGRDFFPDVDAG 568

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQ 631
            +R ++ +     I       ++         P + +A 
Sbjct: 569 QIRLHMRAPSGLRIEETARLADEVEAAIRTLIPRNELAT 607



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 67/165 (40%), Gaps = 7/165 (4%)

Query: 671  VGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTL 729
            VG++++ + + + I + F  W   L  +T L   +        + G   ++ ++   +  
Sbjct: 893  VGLVMAIVLVYLLIVVNFQSWIDPLIIVTALPAALAGIAWMLFVTGTTLSVPSLTGAIMT 952

Query: 730  IGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +G +  + +++    R+ +      I+      ++    L   + T++A  I ++PMA+ 
Sbjct: 953  MGVATANSILLISFARERLHE---GIAPMQAALEAGATRLRPVLMTALAMIIGMVPMALG 1009

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
               G          +  G++ A  S++F    +   ++    + A
Sbjct: 1010 LGEGAEQNAPLGRAVIGGLLFATVSTLFFVPVVFASVHGRLQRRA 1054



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 74/191 (38%), Gaps = 7/191 (3%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
           ++L +    + + + ++ + +  +        +IR+ ++   ++A  +L+++     W  
Sbjct: 302 KLLPVASAALPQDIKITPLFDQSLFVKAAIEGVIREALIAACLTAAMILLFLG---NWRS 358

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
                 ++ L I  ++    L G   NL  +  +   +G  V+D  V  + +    +   
Sbjct: 359 TAIIAVSIPLSILSSIIVLHLLGETINLMTLGGLALAVGILVDDATVTIENI---ERHLH 415

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSS 812
                   I     E    +  +++   I  +PM    G     F +PMA  ++ A  +S
Sbjct: 416 EGKEPVTAILDGAAEIAVPAFVSTICICIVFVPMFFLTGVARYLF-VPMAEAVIFAMLAS 474

Query: 813 IFIAAPILLFI 823
             ++  ++  +
Sbjct: 475 YVLSRTLVPTL 485


>gi|119468117|ref|ZP_01611243.1| copper/silver efflux system, membrane component [Alteromonadales
           bacterium TW-7]
 gi|119448110|gb|EAW29374.1| copper/silver efflux system, membrane component [Alteromonadales
           bacterium TW-7]
          Length = 1039

 Score =  120 bits (301), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 70/650 (10%), Positives = 167/650 (25%), Gaps = 37/650 (5%)

Query: 29  QSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGV 88
            + +D  P       I                     V   +          +       
Sbjct: 33  NTPVDALPDLSDVQVI---------VKTSYPGQAPQVVQDQVTYVLTTAMLSVPGAKTVR 83

Query: 89  FSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLS 148
                  + + + F DS        +V  +L    ++L       L    T      +  
Sbjct: 84  GFSFFGDSYVYIIFDDSTDLYWARSRVQEYLTQAANRLPEGATPELGPDATGVGWVYLY- 142

Query: 149 QNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGT 208
                       +           ++       +      ++ Q     DP++LR     
Sbjct: 143 ALIDKTNTLDISQLRDLQDWFLKFELQTVPGVSEVASVGGMVKQYQVNVDPNKLRAYGIP 202

Query: 209 TAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKP 268
            + +       N      +  +        +   ++   ++                   
Sbjct: 203 LSLIQTAIQQGNQETGASVIEMAEAEYMVTSTGYIKSVADLEA----------------- 245

Query: 269 VVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETA 328
            + +  +  G         +    P        +         I   +   +   TIE  
Sbjct: 246 -IPLGTNANGTALQLRDVANIRLGPQMRRGVSDLNGEGEATGGIVVMRYGENAQKTIELV 304

Query: 329 GILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGL 388
                 L+ G       I           + S           +V +V  + + + +  L
Sbjct: 305 KAKLESLKKGLPEGVEIIPVYDRSNLINNAISNLTSKLVEELIVVALVCVVFLFHVRSSL 364

Query: 389 VADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRK---- 444
           VA  ++ L ++    ++   G    + S+ GI + IG   D  I++ E + +   K    
Sbjct: 365 VAIITLPLGILTAFIVMYWQGINANIMSLGGIAIAIGAMTDGAIVMIENMHKHMEKTPLT 424

Query: 445 NQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMF 501
           +Q+ +  +    S     +F S +   ++ + +F      G      A T   ++  S  
Sbjct: 425 DQNRWEVVIKATSEVGPALFFSLLIITVSFLPVFILEAQEGRMFSPLAYTKTYAMAASAG 484

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            AI++V  +M + IR K +                 +    +      +  +++ ++   
Sbjct: 485 LAITLVPVLMGYFIRGKVIPENKNPVNRLLVAAYRPLLRWVLNFPKTTLIFALVMTLVGF 544

Query: 562 CLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRL 621
             L   G  +      G  + +          +    E LQ  D         K    ++
Sbjct: 545 YPLNKIGSEFIPPLDEGDLMYMPTT--YPSISIAKAREILQQTDKLIATVPEVKTVFGKV 602

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV 671
                 +      +     ++            E +  ++   +   G+ 
Sbjct: 603 GRAETATDPAPLTMIETFIQLKPKDEWREGMTLEKLKAELDALVTFPGLT 652



 Score = 55.1 bits (130), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 90/236 (38%), Gaps = 3/236 (1%)

Query: 598 LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
           L       +S  N +GE    + +     ++     +++   + + + +P          
Sbjct: 267 LGPQMRRGVSDLNGEGEATGGIVVMRYGENAQKTIELVKAKLESLKKGLPEGVEIIPVYD 326

Query: 658 GPKISRELIRKGIVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
              +    I      ++   I + +  +   F    +L AI TL L I          GI
Sbjct: 327 RSNLINNAISNLTSKLVEELIVVALVCVVFLFHVRSSLVAIITLPLGILTAFIVMYWQGI 386

Query: 717 EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR-DLIDKSINETLGRSVYT 775
             N+ ++  +   IG   +  +V+ + M K+M+    +   R +++ K+ +E      ++
Sbjct: 387 NANIMSLGGIAIAIGAMTDGAIVMIENMHKHMEKTPLTDQNRWEVVIKATSEVGPALFFS 446

Query: 776 SMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            +   +S LP+ +        F+ P+A+    A ++S  +A  ++  +  +  +  
Sbjct: 447 LLIITVSFLPVFILEAQEGRMFS-PLAYTKTYAMAASAGLAITLVPVLMGYFIRGK 501



 Score = 54.7 bits (129), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 85/265 (32%), Gaps = 20/265 (7%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +     + + L  V           I  +N        + +      S  ++    + +
Sbjct: 780  PIVTPQGQHIALGDVADVFIENGPSGIKSENARLNGWVYIDIDGVDIGSYVESARAVLDE 839

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            + I       +         +   +L    +V + ++ I +L+Y+  +    FA   I  
Sbjct: 840  RLILPSGYSISWAGQYEYMQRAKEKLTY--VVPLTLAIIVVLLYLNFK---SFAEVTIIM 894

Query: 700  LILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTTS 754
              L +    G     L G  F++      + L G +V   V++    ++  +NM L    
Sbjct: 895  CTLPLAMIGGVWLMYLQGFNFSVAVGVGFIALAGVAVEIGVIMLVYLNQAYQNMCLTAKR 954

Query: 755  IS-------FRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFG 804
                      +  I +     +   + T     I +LP+      G  V+   A PM  G
Sbjct: 955  ADKPLSLAQLQQAIIEGAGLRVRPVMMTVATIVIGLLPVLYGTGTGSEVMSRIAAPMVGG 1014

Query: 805  IVVAASSSIFIAAPILLFIYDWRAK 829
            +V A   ++ +   + L       K
Sbjct: 1015 MVSAIMLTLLVIPAVYLLWRKKAIK 1039


>gi|326381779|ref|ZP_08203472.1| drug exporter of the RND superfamily-like protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326199205|gb|EGD56386.1| drug exporter of the RND superfamily-like protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 752

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 64/560 (11%), Positives = 168/560 (30%), Gaps = 61/560 (10%)

Query: 325 IETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYG 384
           ++        L       + + ++    G  + +         I   +  +++ +     
Sbjct: 146 MDVDVATKDQLLDVLEKHRGDGLQIEATGGVMSAQEQAGKAELIGFAIAFVIMIVAFGAL 205

Query: 385 KWGLVADFSIFLNVILTLALLSLLGATLTL---PSIAGIVLGIGLAVDSNILVNERIREE 441
               +   +  + V LT+ L++L    L++    +    +LGI +++D  + +  R R E
Sbjct: 206 IAAFIPLVTGIVGVGLTMMLVTLSAEVLSINQAATAIITMLGIAVSIDYALFIVSRYRSE 265

Query: 442 NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMF 501
             +      +       A S +  + +T +IA   L   G   +    +   ++IL+++ 
Sbjct: 266 AGRGGDRADAAGRAVGTAGSAVVFAGLTVIIAVAALMVIGIPIITQMGLGAAVAILVAVL 325

Query: 502 TAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSI 561
            A++ + A++    R+     I     +      D + ++F R         ++  +  +
Sbjct: 326 AALTFIPALLGAFGRFAFKPRIPWIKHAEPSPDHDTLGVKFGRTLVKKPIPFVIAGLAIL 385

Query: 562 CLLFTHGLNYGIDFK----------------------GGIQLGVLANRPVDLSVVRSNLE 599
                   N  +                         G + + +  +         + + 
Sbjct: 386 IAAAIPIKNMTLGMDTVTDDQVAGQELLAKGFGEGVAGPLVVVMHTDEGTIDDAANTAVA 445

Query: 600 SL----------------QIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK-- 641
            +                        N       ++        + A   ++E ++    
Sbjct: 446 KIKELPGVAAPETVTWIGNGTSPQNPNAGANSAMIMVTPTSAPSAPATHDLVEAIRDTSG 505

Query: 642 -ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISA-IAMLIYIWIRFKWYFALGAITT 699
            I        +     +   +S +L +  I  +++   +A LI I +    +  L     
Sbjct: 506 TIEAKGAEIHVGGQTAIMSDLSAKLDKALIPYLVVVVGLAFLIMIGVFRSIWVPLIGTLG 565

Query: 700 LILDITKTLGF---------FALFGIE---FNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
            +  +  T G          F L        +   +  +  + G +++ +V +  RMR+ 
Sbjct: 566 FVFSMLATFGITTAIFTDGTFGLIDHTKPLLSFLPIFLIGVVFGLAMDYQVFLVTRMREE 625

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
              Y   +  +D I           V  ++          +   +        +A  +  
Sbjct: 626 ---YIHGMKAKDAIVAGYRHGARVVVSAAIIMISVFAAFMLSPDTTAKMMGFALAIAVFF 682

Query: 808 AAS-SSIFIAAPILLFIYDW 826
            A    + I   +L  + D 
Sbjct: 683 DAFLVRMVIVPGLLALLGDR 702



 Score = 77.8 bits (189), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 81/249 (32%), Gaps = 9/249 (3%)

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             V+ + V   L              G+   +  +      ++    V    K ++ +++
Sbjct: 103 DKVEAASVYDPLAVAAAKPEMATAVVGDNGKIGLISVHQKINLMDVDV--ATKDQLLDVL 160

Query: 647 PLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDIT 705
                   +I           +     +I      + + + F     A   + T I+ + 
Sbjct: 161 EKHRGDGLQIEATGGVMSAQEQAGKAELIGFAIAFVIMIVAFGALIAAFIPLVTGIVGVG 220

Query: 706 KTLGFFALFGIEFNLTAVA-AVLTLIGY--SVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
            T+    L     ++   A A++T++G   S++  + +  R R             D   
Sbjct: 221 LTMMLVTLSAEVLSINQAATAIITMLGIAVSIDYALFIVSRYRSEA---GRGGDRADAAG 277

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
           +++       V+  +   I+V  + V G  +I    +  A  I+VA  +++     +L  
Sbjct: 278 RAVGTAGSAVVFAGLTVIIAVAALMVIGIPIITQMGLGAAVAILVAVLAALTFIPALLGA 337

Query: 823 IYDWRAKNA 831
              +  K  
Sbjct: 338 FGRFAFKPR 346



 Score = 42.0 bits (96), Expect = 0.39,   Method: Composition-based stats.
 Identities = 53/540 (9%), Positives = 135/540 (25%), Gaps = 42/540 (7%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF 65
           + +    MI   G LIA                     +  G+   G + +++ +  +  
Sbjct: 191 FAIAFVIMIVAFGALIAAF-----------------IPLVTGIVGVGLTMMLVTLSAEVL 233

Query: 66  VNGFLQMYSDELRSFLKKEGIG-------VFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                      +                      +  ++   +        +      L 
Sbjct: 234 SINQAATAIITMLGIAVSIDYALFIVSRYRSEAGRGGDRADAAGRAVGTAGSAVVFAGLT 293

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAI-EQSMEIIRQRIDQIGIS 177
           +    + L V     +        ++I+++       I   +        + RI  I  +
Sbjct: 294 VIIAVAALMVIGIPIITQMGLGAAVAILVAVLAALTFIPALLGAFGRFAFKPRIPWIKHA 353

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E +        +       + P             +   +         +   +      
Sbjct: 354 EPSPDHDTLG-VKFGRTLVKKPIPFVIAGLAILIAAAIPIKNMTLGMDTVTDDQVAGQEL 412

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   E    ++G  +     +           ++  +         T   IG   +  
Sbjct: 413 LAKGFGEG---VAGPLVVVMHTDEGTIDDAANTAVAKIKELPGVAAPETVTWIGNGTSPQ 469

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                  + +I     S  +  + +  +E     +  + A    I +             
Sbjct: 470 NPNAGANSAMIMVTPTSAPSAPATHDLVEAIRDTSGTIEAKGAEIHVGGQTAIMSDLSAK 529

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLAL---------LSLL 408
            D        +V GL  +++  +       L+       +++ T  +           L+
Sbjct: 530 LDKALIPYLVVVVGLAFLIMIGVFRSIWVPLIGTLGFVFSMLATFGITTAIFTDGTFGLI 589

Query: 409 GATLTLPSIAGIVLG---IGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFD 465
             T  L S   I L     GLA+D  + +  R+REE         ++  G+      +  
Sbjct: 590 DHTKPLLSFLPIFLIGVVFGLAMDYQVFLVTRMREEYIHGMKAKDAIVAGYRHGARVVVS 649

Query: 466 SNITALIATVVLFFFGGGAVRGFAITMGLSILISMFTA-ISIVRAMMIFIIRYKKMKSID 524
           + I  +              +     + +++    F   + IV  ++  +          
Sbjct: 650 AAIIMISVFAAFMLSPDTTAKMMGFALAIAVFFDAFLVRMVIVPGLLALLGDRAWGLPRW 709


>gi|39934494|ref|NP_946770.1| heavy metal efflux pump CzcA [Rhodopseudomonas palustris CGA009]
 gi|39648343|emb|CAE26863.1| putative inner membrane component for iron transport
           [Rhodopseudomonas palustris CGA009]
          Length = 1052

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 78/584 (13%), Positives = 166/584 (28%), Gaps = 40/584 (6%)

Query: 12  SMICCIGLLIALPNFLPQS---MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            ++   G   A    L       LD  P            D +   +          +  
Sbjct: 13  LLLVLFGTGFAAAAGLYALLHLPLDAIPDLS---------DTQVVVYTEYPGQAPQVIED 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +          + K  +         + + + F D         +V  FL G  S+L  
Sbjct: 64  QVTYPLTTAMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDIYWARSRVLEFLNGAASRLPA 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
               ++    T        +  +    ++                +  +E   +      
Sbjct: 124 GVAPSIGPDATGVGWVYQYAVMSKQLNLADTRTIQD---WNLRFALAKAEGVAEVASIGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            + Q     DP R+R    T A+M       N    G    +         +  ++D  +
Sbjct: 181 FVKQYNVVLDPQRMRDRGITMARMREAIRASNADVGGRTVELSEFEYVIRGKGYIKDIND 240

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +                      +     G     +        P        +     +
Sbjct: 241 LG-------------------SIVLKARGGTPVLLKDVARVELGPDERRGIAELNGEGEV 281

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +  ++    IE        + +        +           +    K T   
Sbjct: 282 ASGIVLQRFGVNALDVIEHVKKRFQEIASSLPKSVEIVPVYDRSTLIYSAIDTLKHTLLE 341

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + +V  V  + +L+ +  LVA   + + V++  A + LLG    + S+ GI + IG  V
Sbjct: 342 ESLVVAAVCIIFLLHVRSALVAILMLPVGVLMAFAAMKLLGLGSNIMSLGGIAIAIGAMV 401

Query: 429 DSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           D+ I++ E   +        +S    L    S     +F S +   ++ + +F      G
Sbjct: 402 DAAIVMIENAHKHLERAEPGKSRVTILIEAASEVGPALFFSLLIITVSFLPIFTLESQEG 461

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   ++  +   ++++V A+M+  +R K +             I   +    
Sbjct: 462 RLFGPLAFTKTFAMAAAALLSVTLVPALMVIFVRGKIVPEHRNIINRALIWIYRPVIRGV 521

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           +RA+   + ++++    SI      G  +      G  L +   
Sbjct: 522 LRAKTLVIVLALVVLSVSIWPARQLGTEFMPSLDEGTLLYMPTT 565



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 26/159 (16%), Positives = 66/159 (41%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++++A+ ++  + +R     AL AI  L + +        L G+  N+ ++  +   IG
Sbjct: 343 SLVVAAVCIIFLLHVR----SALVAILMLPVGVLMAFAAMKLLGLGSNIMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+  +V+ +   K+++      S   ++ ++ +E      ++ +   +S LP+     
Sbjct: 399 AMVDAAIVMIENAHKHLERAEPGKSRVTILIEAASEVGPALFFSLLIITVSFLPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     +
Sbjct: 459 QEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVIFVRGK 497



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 70/229 (30%), Gaps = 16/229 (6%)

Query: 613  GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG 672
                    +     D      V +  +     +        T     +       +  + 
Sbjct: 806  ENGQLATYIYVDIRDRDLGGYVADAKQAVQAGLSFPPGTYVTWSGQYEYLERATARLKIV 865

Query: 673  VIISAIAMLIYIWIRFKWYF-ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            V ++   + + +++ F+     L  + +L   +   L      G   ++      + L G
Sbjct: 866  VPLTLAIIFLLLYLNFRSLTETLIVMLSLPFALVGGLWLMWALGFNLSVAVAVGFIALAG 925

Query: 732  YSVNDKVVVY-----------DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +    VV+             R     +  +     +D I +   E +   + T +A  
Sbjct: 926  VAAETGVVMLIYLDHALAAAKARCVAEGRPLSPR-DLQDAIMEGAVERVRPKMMTVVAIM 984

Query: 781  ISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
              +LP+      G  ++   A+PM  G+V +   ++ +   +   I  +
Sbjct: 985  AGLLPILWSSGTGSEIMQRIAVPMIGGMVSSTLLTLIVIPALYGLIEGF 1033


>gi|228936718|ref|ZP_04099509.1| Swarming motility protein swrC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228822927|gb|EEM68768.1| Swarming motility protein swrC [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 1038

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 195/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKDALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       +      K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASSQGSQTAGAGAQMPQMNPAAMNGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNGVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.4 bits (214), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNGVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|218462049|ref|ZP_03502140.1| probable multidrug efflux transporter protein [Rhizobium etli Kim
           5]
          Length = 477

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/505 (12%), Positives = 138/505 (27%), Gaps = 37/505 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +      +L   +   GL            +   P       I+            L   
Sbjct: 8   QRPVATTLLAIGVILAGLA-----GYRLVPVAALPQVDFPT-IN--------VSAQLSGA 53

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               +   +     +    +        S       I L F  +R  +  A  V   +  
Sbjct: 54  SPQTMATSVATPLIKQFETIPGISEISASSSLGSTSIVLQFDLNRDIDAAAADVQAAISH 113

Query: 122 VNSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
              +L  +         T      ++L     + +    +++  E I      +      
Sbjct: 114 ATRQLPDNLTTPPSYRKTNPADAPVMLLSVQSNTMPRSKLDEIAEDI--ISPSLSTLPGV 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            Q          +  E DP++L         ++      N+ +                 
Sbjct: 172 AQVSVYGAQTYAVRVEVDPNKLLTRGIGIDTVNKALSAANSQQPVGTLQ----------- 220

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                    +       TAN           +                ++   +     G
Sbjct: 221 ---------NNAQSMTITANTQRTNADQFRSLVIANPNGAPIHLGDVADVQDSVENQYTG 271

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                          +   +    ++        L A        +V          + +
Sbjct: 272 SWYDGQRGIILAIQRQPDANTVDVVDAINAKLPQLHAEIPASVTTVVMNDAAKPIRAAIA 331

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K T  +  GLV++V+++   +    ++   ++ L++I T  ++ +LG ++   S+ G+
Sbjct: 332 DVKFTLFLTIGLVVLVIYLFTGHATATIIPGLAVPLSLISTFGMMYVLGYSIDNISLLGL 391

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
            L +GL VD  I++ E I     +   V  +   G      TI   +++ +   + +   
Sbjct: 392 TLAVGLVVDDAIVMLENILRHVEEGMPVREAAIKGAGEVSYTIISMSVSLIAVFIPILLM 451

Query: 481 GGGAVRGFAITMGLSILISMFTAIS 505
           GG   R F     +  +  + +AI 
Sbjct: 452 GGVVGRVFNEFGMVVAIAIISSAIV 476



 Score = 72.0 bits (174), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 89/262 (33%), Gaps = 12/262 (4%)

Query: 559 CSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFL 618
            +     T   N         +  V+AN       +    +     +  +     +    
Sbjct: 220 QNNAQSMTITANTQRTNADQFRSLVIANPNGAPIHLGDVADVQDSVENQYTGSWYDGQRG 279

Query: 619 VRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELI-----RKGIVGV 673
           + L  Q         V++ +  K+ ++        T +V    ++ +       K  + +
Sbjct: 280 IILAIQRQPDANTVDVVDAINAKLPQLHAEIPASVTTVVMNDAAKPIRAAIADVKFTLFL 339

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
            I  + ++IY+         +     + L +  T G   + G   +  ++  +   +G  
Sbjct: 340 TIGLVVLVIYL-FTGHATATIIPGLAVPLSLISTFGMMYVLGYSIDNISLLGLTLAVGLV 398

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+D +V+ + +   ++     +  R+   K   E     +  S++     +P+ + GG V
Sbjct: 399 VDDAIVMLENI---LRHVEEGMPVREAAIKGAGEVSYTIISMSVSLIAVFIPILLMGGVV 455

Query: 794 IG---SFAIPMAFGIVVAASSS 812
                 F + +A  I+ +A  S
Sbjct: 456 GRVFNEFGMVVAIAIISSAIVS 477


>gi|241114348|ref|YP_002973823.1| heavy metal efflux pump, CzcA family [Ralstonia pickettii 12D]
 gi|309783169|ref|ZP_07677885.1| heavy metal RND efflux transporter, CzcA family [Ralstonia sp.
           5_7_47FAA]
 gi|240868921|gb|ACS66579.1| heavy metal efflux pump, CzcA family [Ralstonia pickettii 12D]
 gi|308918047|gb|EFP63728.1| heavy metal RND efflux transporter, CzcA family [Ralstonia sp.
           5_7_47FAA]
          Length = 1056

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 64/551 (11%), Positives = 146/551 (26%), Gaps = 48/551 (8%)

Query: 3   NNPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
            N +L++L   M+   GL          + LD  P       I                 
Sbjct: 11  RNRFLILLATLMLTAWGLWAV-----RSTPLDALPDLSDVQVI---------IRTPFPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +              + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGYSFFGDSFVYVLFEDGTDLYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V S+L    K  L    T                     +           ++    +  
Sbjct: 117 VQSRLPAAAKPALGPDATGVGWIYEY-ALVDKTGQHDLSQLRALQDWFLRFELKSLPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q      P RLR    + AK+       N    G +  +           
Sbjct: 176 EVASLGGMVKQFQVVLMPDRLRAYNLSQAKVLAALKGANQETGGSVLELGEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            ++   +                     + ++ ++ G              P        
Sbjct: 236 YLKTLDDFR------------------QIPLTTNDAGIAVRLGDVATLQLGPEMRRGIAD 277

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +   ++  +   TIE      A L+         +           +   
Sbjct: 278 LNGQGEVAGGVIVMRSGKNALETIEAVKAKLATLQKSLPAGVEIVPTYDRSALINRAVEN 337

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                     +V +V  + + + +  LVA  S+ L V+    ++   G    + S+ GI 
Sbjct: 338 LTHKLIEEFIVVALVCLVFLFHLRSALVAIVSLPLGVLAAFLVMRYQGVNANIMSLGGIA 397

Query: 422 LGIGLAVDSNILVNERIREENRK-----------NQSVFCSLDMGFSRAYSTIFDSNITA 470
           + +G  VD+ +++ E   +   +               +  +    +     +F S +  
Sbjct: 398 IAVGAMVDAAVVMIENAHKHLERWHEENPNRELEGHERWSVIGESAAEVGPALFFSLLII 457

Query: 471 LIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
            ++ + +F      G      A T   S+  +   ++++V  +M ++IR +         
Sbjct: 458 TLSFIPVFTLEAQEGRLFSPLAFTKTYSMAAAAGLSVTLVPVLMGYMIRGRIPTEQSNPL 517

Query: 528 LSRFFLIPDCI 538
                 +   +
Sbjct: 518 SRWLIRLYQPM 528



 Score = 51.2 bits (120), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/243 (13%), Positives = 78/243 (32%), Gaps = 12/243 (4%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            L       I+  N  GE    V +     +++     ++     + + +P         
Sbjct: 266 QLGPEMRRGIADLNGQGEVAGGVIVMRSGKNALETIEAVKAKLATLQKSLPAGVEIVPTY 325

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIY-IWIRFKWYFALGAITTLILDITKTLGFFALFG 715
               +    +      +I   I + +  +   F    AL AI +L L +          G
Sbjct: 326 DRSALINRAVENLTHKLIEEFIVVALVCLVFLFHLRSALVAIVSLPLGVLAAFLVMRYQG 385

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMR--------KNMKLYTTSISFRDLIDKSINE 767
           +  N+ ++  +   +G  V+  VV+ +           +N            +I +S  E
Sbjct: 386 VNANIMSLGGIAIAVGAMVDAAVVMIENAHKHLERWHEENPNRELEGHERWSVIGESAAE 445

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIY 824
                 ++ +   +S +P+          F   A    + +  AA  S+ +   ++ ++ 
Sbjct: 446 VGPALFFSLLIITLSFIPVFTLEAQEGRLFSPLAFTKTYSMAAAAGLSVTLVPVLMGYMI 505

Query: 825 DWR 827
             R
Sbjct: 506 RGR 508


>gi|289668244|ref|ZP_06489319.1| acriflavin resistance protein [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 591

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 77/605 (12%), Positives = 175/605 (28%), Gaps = 37/605 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           MR++   +   +MI   G++  L     +         +                +    
Sbjct: 8   MRSSRLTLFAAAMILIGGIVAFLGFPSQEEPSVTVRDTL--------------VSVAYPG 53

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLS-FADSRFKENIADKVTLFL 119
              + V   L    +E    L      V ++R     + L+ + D +    +  +V    
Sbjct: 54  MPSEQVENLLARPIEEQLRELAGIKRIVTTVRPGSAIVQLTAYDDVQDLPALWQRVRAKA 113

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
               ++L        +    +    + ++   +        E     +R+  +Q+     
Sbjct: 114 AEAGAQLPAGTLGPFV---DDDFGRVSVASIAVTAPGFSMSEMRG-PLRRMREQLYGLPG 169

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
             Q         ++    D +R+     T + +       N    G    V  L  +   
Sbjct: 170 VEQVKLFGLQDERVYVSFDRARMLASGLTPSSVMAQLRAQNVVGSGGQVAVSGLALTVAT 229

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              +    ++ G+ L+   A                  GAR         +    A    
Sbjct: 230 SGEIRTPEQLRGVLLSVPGA---------------PAGGAREVTLGELGQVQVMPADPPQ 274

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
              +        +       S       A        A  LP+             +  +
Sbjct: 275 SAAVYQGQPAVVVSVSMQPGSNIADFGKALRAKLDDTARQLPVGFTQHVVSFQADVVERE 334

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
                       ++++ + M+ L  + GL+    + L +  +L ++ +L   L   SIA 
Sbjct: 335 MGKMHHVMGETIVIVMAVVMLFLGWRTGLIVGAIVPLTIFASLIVMRVLDVELQTVSIAA 394

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I+L +GL VD+ I++ E I       +    +         + +  S++  ++A    FF
Sbjct: 395 IILALGLLVDNGIVIAEDIERRLVAGEERRQACIDAGRTLATPLLTSSLVIVLAFSPFFF 454

Query: 480 FGGGAV---RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                    R  A  +G+++L S   +I++   + ++  +    K  D      +     
Sbjct: 455 GQTSTNEYLRSLATVLGVTLLGSWVLSITVTPLLCMYFAKVHATKDSDAAESRFYRGYRR 514

Query: 537 CIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRS 596
            I         +   ++ + ++    L+           +   Q+ V      D      
Sbjct: 515 VIERVLQHKALFIGAMAAMLAVAITVLVSIPYDFLPKSDRLQFQMPVTLQAGSDARETLR 574

Query: 597 NLESL 601
            +  L
Sbjct: 575 TVSDL 579



 Score = 58.5 bits (139), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/157 (16%), Positives = 63/157 (40%), Gaps = 12/157 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           ++I    +++++  R      +GAI  L   I  +L    +  +E    ++AA++  +G 
Sbjct: 346 IVIVMAVVMLFLGWRTGLI--VGAIVPL--TIFASLIVMRVLDVELQTVSIAAIILALGL 401

Query: 733 SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
            V++ +V+ + +    +L       +  ID     TL   + TS    +       +G +
Sbjct: 402 LVDNGIVIAEDI--ERRLVAGEERRQACIDAG--RTLATPLLTSSLVIVLAFSPFFFGQT 457

Query: 793 V----IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                + S A  +   ++ +   SI +   + ++   
Sbjct: 458 STNEYLRSLATVLGVTLLGSWVLSITVTPLLCMYFAK 494


>gi|289641488|ref|ZP_06473651.1| drug exporter of the RND superfamily-like protein [Frankia symbiont
           of Datisca glomerata]
 gi|289508698|gb|EFD29634.1| drug exporter of the RND superfamily-like protein [Frankia symbiont
           of Datisca glomerata]
          Length = 719

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 92/555 (16%), Positives = 175/555 (31%), Gaps = 52/555 (9%)

Query: 321 GNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVA-----GLVLI 375
            +FT ETA  L   L A S     + +   +  A  G++    G            L ++
Sbjct: 130 TSFTSETAEALKKSLAAHSPAGLTSTITGLDELATNGANDSGPGVLVETLLAGLGALAVL 189

Query: 376 VLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVN 435
                 L     L+      L+  L L  L++      L      ++G+G+A+D ++L+ 
Sbjct: 190 AFVFASLLALLPLLIAAVAILSTFLVLLGLTVFVDVSFLVQFLVSLIGLGVAIDYSLLIV 249

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
            R REE    +    ++      A   +  S +T  I  V +       +R       L 
Sbjct: 250 TRWREERAHGRDNHDAVVASMQFAGHAVVFSGLTVAIGLVAMVVIPVPFLRSIGYGGMLI 309

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISIL 555
            LIS+    +++ A++  I        +     +  F       +   R    GVGI+IL
Sbjct: 310 PLISVAVTTTLLPALLGGIGPRVDWPRVRHENTASRFWTRWASLVVRRRWIAAGVGIAIL 369

Query: 556 FSICSICLLFTHGL-------NYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISF 608
            ++         G          G  ++    L         L+     ++S    D++ 
Sbjct: 370 TALIIPFFGIQIGTAQSGSLAKNGPAYEAIKLLEDGGAPKGVLTPAEILVQSSAADDVAQ 429

Query: 609 QNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT-EIVGPKISRELIR 667
           +    +      L      +   T ++  V  + T                  +   +  
Sbjct: 430 RVRAVDGVVTATLPSGTDANRDGTSLIIAVPDRETAGGSSIDPIRNIRSALHDVPGVIGV 489

Query: 668 KGIVGV--------------IISAIAMLIYIWI---RFKWYFALGAITTLILDITKTLGF 710
            GI  +               ++ I ++ YI +          L A+   ++ +  T G 
Sbjct: 490 TGIGALQLDYMHGVYGVFPWALALIVIVTYILLVRAFRSLLLPLKAVVLNLVSLGATFGG 549

Query: 711 FALF-----------GIEFNLTA-----VAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
             LF           GIE          +     L G S++ +V +  R+R+    Y   
Sbjct: 550 VVLFWQHGYGSEKIYGIEATGAITFWLPLMVFAFLFGLSMDYEVFILSRIREE---YDAR 606

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV-IGSFAIPMAFGIVVA-ASSS 812
                 + + +  T GR V ++             G    I  FA  + FGI++      
Sbjct: 607 GDTHAAVIEGVGRT-GRLVTSAALILFLSFLSLSSGPQTDIKLFATALGFGILLDATVVR 665

Query: 813 IFIAAPILLFIYDWR 827
           + +   ++     W 
Sbjct: 666 MLLVPALVSLFGSWN 680


>gi|329957794|ref|ZP_08298269.1| hypothetical protein TIGR03982 [Bacteroides clarus YIT 12056]
 gi|328522671|gb|EGF49780.1| hypothetical protein TIGR03982 [Bacteroides clarus YIT 12056]
          Length = 1054

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 73/620 (11%), Positives = 178/620 (28%), Gaps = 22/620 (3%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWETDVYLARQIVSEKLAVV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L  +  K  L   +     +++     D      ++           ++  +    Q
Sbjct: 118 SESLPSNVGKPTLGPQSSILGEMLIVGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +   + DP R+R    T  ++       N +  G +               
Sbjct: 176 VAVLGGDIKEYQIQLDPERMRHYGVTLTEVMNVTREMNLNANGGVLYEYGNEYIVRGVIS 235

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   +++   +          T                  ++    IG  L  +     
Sbjct: 236 TDRVEQLAKAVVKLQDGGAQTATANAR---PLAAASPVLLEDIADVRIGAKLPKLGTASE 292

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
              P +   +    A  +   T +    L  + +     +K++    R       S    
Sbjct: 293 RGKPAVLLTVTKQPATSTLELTDKLETSLKDLQKNLPSDVKVSTDIFRQSRFIESSIGNV 352

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +       V+IVLF+ +   +  +++  ++ L++I +L  L  +G T+   S+ G+ +
Sbjct: 353 QKSLFEGGIFVVIVLFLFLANVRTTVISLVTLPLSLIASLLALHYMGFTINTMSLGGMAI 412

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCS--------LDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +  R+N+    +        +          I +S +  +++ 
Sbjct: 413 AIGSLVDDAIVDVENVYKRLRENRLKPEAERLSILEVVFNASKEVRMPILNSTLIIVVSF 472

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP---- 527
           V LFF     G  +    I   +++  S   A+++   +  +++  +K+K    +     
Sbjct: 473 VPLFFLSGMEGRMLVPLGIAFIVALAASTVVALTVTPVLCSYLLGREKIKDEKRSTGDSP 532

Query: 528 --LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
                       +       +    G   LF +   C             +G   + + +
Sbjct: 533 VARKMKEWYGTALTFVLGHKKSVLGGTIGLFVVALACFFTLGRSFLPPFNEGSFTINISS 592

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
              + L          +   +S            R +            +E   +     
Sbjct: 593 LPGISLEESDKIGHRAEELLLSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRS 652

Query: 646 VPLSTIQNTEIVGPKISREL 665
                    E +G  +   +
Sbjct: 653 RSELVADVREKLGTIVGANV 672



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 78/216 (36%), Gaps = 11/216 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +T + ++ K   +++   + I             + +    G I   I +
Sbjct: 308 TSTLELTDKLETSLKDLQKNLPSDVKVSTDIFRQSRFIESSIGNVQKSLFEGGIFVVIVL 367

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++         + ++ TL L +  +L      G   N  ++  +   IG  V+D +V 
Sbjct: 368 FLFLA---NVRTTVISLVTLPLSLIASLLALHYMGFTINTMSLGGMAIAIGSLVDDAIVD 424

Query: 740 ---VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
              VY R+R+N +K     +S  +++  +  E     + +++   +S +P+    G    
Sbjct: 425 VENVYKRLRENRLKPEAERLSILEVVFNASKEVRMPILNSTLIIVVSFVPLFFLSGMEGR 484

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRA 828
           ++    I     +  +   ++ +   +  ++     
Sbjct: 485 MLVPLGIAFIVALAASTVVALTVTPVLCSYLLGREK 520



 Score = 63.2 bits (151), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/219 (12%), Positives = 82/219 (37%), Gaps = 11/219 (5%)

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
            N   ++      +    R +    ++  +             G +   E      + +  
Sbjct: 829  NVKRKIVISANVADRDLRSVVNDIQERVDASVKLPEGYHIEYGGQFESEQAASRTLALTS 888

Query: 676  SAIAMLIYIWIRFKWYFAL--GAITTLILDITKTLGFFALF--GIEFNLTAVAAVLTLIG 731
                ++I++ +  ++  ++   AI  + L +    G FAL     E ++ A+   ++L G
Sbjct: 889  FMSIVVIFLLLYHEFR-SVKESAIILINLPLALIGGVFALLITTGEVSIPAIIGFISLFG 947

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             +  + +++      N           D + +   + L   + T++++ ++++P+A+ G 
Sbjct: 948  IATRNGMLLISHY--NHLQQEEGYGVYDSVIRGSLDRLNPILMTALSSALALIPLALSGD 1005

Query: 792  ----SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
                 +    A  +  G++ +   + FI   + L ++  
Sbjct: 1006 LPGNEIQSPMAKVILGGLLTSTFLNGFIIPIVYLMMHKK 1044


>gi|148255048|ref|YP_001239633.1| cation efflux system protein [Bradyrhizobium sp. BTAi1]
 gi|146407221|gb|ABQ35727.1| Cation efflux system protein [Bradyrhizobium sp. BTAi1]
          Length = 1063

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 72/584 (12%), Positives = 160/584 (27%), Gaps = 40/584 (6%)

Query: 12  SMICCIGLLIALPNFLPQS---MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            ++   G   A    L       LD  P       I          +          +  
Sbjct: 13  LLLVLFGTGFAAAAGLYALVHLPLDAIPDLSDTQVI---------VYTEYPGQAPQVIED 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +          + +  +         + + + F D         +V  FL   +S+L  
Sbjct: 64  QVTYPLTTAMLTVPRSKVVRGFSFFGVSFVYVIFEDGTDIYWARSRVMEFLNSASSRLPA 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
                +    T        +  + +  ++                +  +    +      
Sbjct: 124 GVTPTIGPDATGVGWVYQYAVMSKELNLAETRTIQD---WNLKFALAKAGGVAEVASIGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            + Q     DP R+R    +  K+       N    G    +         +  ++   +
Sbjct: 181 FVKQYNVILDPQRMRDRGISMQKIRDAIRASNADVGGRTVELSEFEYVIRGKGYLKSIND 240

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +                      +     G              P        +     +
Sbjct: 241 LG-------------------NIVLKTSGGTPVLLRDVASVELGPDERRGIAELNGEGEV 281

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +  ++    IE        + +        +           +    K T   
Sbjct: 282 ASGIVLQRFGVNALDVIENVKARFKDIASSLPSSVEIVPVYDRSNLIYAAIDTLKHTLLE 341

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + +V +V  + +L+ +  LVA   + + V++    + LLG    + S+ GI + IG  V
Sbjct: 342 ESLVVAVVCVVFLLHIRSALVAILMLPVGVLMAFGAMKLLGLGSNIMSLGGIAIAIGAMV 401

Query: 429 DSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           D+ I++ E   +     +  QS    L    +     +F S +   ++ + +F      G
Sbjct: 402 DAAIVMIENAHKHLERAKPGQSRVQVLIDAAAEVGPALFFSLLIITVSFMPIFTLESQEG 461

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   S+  +   ++++V A+M+  +R + +             I   +    
Sbjct: 462 RLFSPLAFTKTFSMAAAALLSVTLVPALMVIFVRGRIVAEHRNPINRFLIWIYRPVIKGV 521

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           +RA+   +  S+     SI      G  +      G  L +   
Sbjct: 522 LRAKTLVILASLAVLAISIWPARQLGTEFMPSLNEGTLLYMPTT 565



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 54/145 (37%), Gaps = 3/145 (2%)

Query: 686 IRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMR 745
                  AL AI  L + +    G   L G+  N+ ++  +   IG  V+  +V+ +   
Sbjct: 353 FLLHIRSALVAILMLPVGVLMAFGAMKLLGLGSNIMSLGGIAIAIGAMVDAAIVMIENAH 412

Query: 746 KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMA 802
           K+++      S   ++  +  E      ++ +   +S +P+          F   A    
Sbjct: 413 KHLERAKPGQSRVQVLIDAAAEVGPALFFSLLIITVSFMPIFTLESQEGRLFSPLAFTKT 472

Query: 803 FGIVVAASSSIFIAAPILLFIYDWR 827
           F +  AA  S+ +   +++     R
Sbjct: 473 FSMAAAALLSVTLVPALMVIFVRGR 497



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 80/274 (29%), Gaps = 24/274 (8%)

Query: 576  KGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVL 635
               I + + A   V L  V +   +     I  +N        V ++ +   S       
Sbjct: 773  ASDILVPMPAGGAVPLGEVATVEPARGPTSIRTENGQLATYIYVDIRDRDIGSYVAAAQR 832

Query: 636  EMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALG 695
             + +                    + +  L     + V ++   + + +++ F+      
Sbjct: 833  AVTESIQFPAGYYVVWSGQYEYLQRAAARLK----IVVPVTLTIIFLLLYLNFR-ALTET 887

Query: 696  AITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVY------------ 741
             I  L L      G       G   ++      + L G +    VV+             
Sbjct: 888  MIVMLSLPFALVGGIWMMWWLGFNLSVAVAVGFIALAGVAAETGVVMLIYLDHALAEVRA 947

Query: 742  DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFA 798
             R  +N  L  T       I     E +   + T +A    +LP+      G  ++   A
Sbjct: 948  SRAAENRAL--TRQDLHAAIMVGAVERVRPKMMTVVAIMAGLLPIMWSTGTGSEIMQRIA 1005

Query: 799  IPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
            +PM  G++ +   ++ +   I   +        R
Sbjct: 1006 VPMIGGMISSTLLTLIVIPAIFGLVKGRGLPPDR 1039


>gi|329848011|ref|ZP_08263039.1| cation efflux system protein czcA [Asticcacaulis biprosthecum C19]
 gi|328843074|gb|EGF92643.1| cation efflux system protein czcA [Asticcacaulis biprosthecum C19]
          Length = 1100

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 69/602 (11%), Positives = 152/602 (25%), Gaps = 64/602 (10%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +  I+ +++     +        +  +D  P                 +++ ++++ + 
Sbjct: 16  RYRWIVLALVLVSAAIGVWS--FQRLPIDATPDI---------------TNVQIQINTEA 58

Query: 65  F------VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                      +    +   + L          R   +++T+ F D          V   
Sbjct: 59  PGYSPLEAEQRITFPVETAIAGLPGLDYTRSISRYGLSQVTVVFKDGTDIYFARQLVNER 118

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVI------SHAIEQSMEIIRQRID 172
           LQ   ++L       +   +T      + +                  +           
Sbjct: 119 LQTAKNQLPPGIAPEMGPISTGLGEIFMYTVEARANARKADGTAYSPEDLRTLQDWVIRP 178

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           Q+  +    +         Q      P RL     T + +       N +          
Sbjct: 179 QLRNTPGVTEVNTIGGFERQYHITPLPDRLSAYGLTMSDVVTAVERNNANAGAGYVERYG 238

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
            +         E   ++ G                    I     G          +IG 
Sbjct: 239 EQYLVRVSGQAETLADLGG--------------------IIVTNRGGIPIRVADVADIGL 278

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNV 352
              +           I        +  +       A            P           
Sbjct: 279 GEELRTGAATENGQEIVLGTVFMLSGENSRTVALAAAQKLEEAAKALPPGVEAKPVYDRT 338

Query: 353 GADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATL 412
                +    +   A  A LV+++LF+++   +  L+    I   ++LT+  +     + 
Sbjct: 339 ALVERTIHTVEKNLAEGALLVIVILFLLLGNIRAALITAAIIPFAMLLTITGMVQARVSG 398

Query: 413 TLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-------IFD 465
            L S+    L  GL VD  +++ E       + Q     L     R   T       I  
Sbjct: 399 NLMSLGA--LDFGLIVDGAVIIVENCLRRFAEAQHYQGRLLTRDERFSLTAAATAEVIRP 456

Query: 466 SNITALIATVV------LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
           S    LI  +V      L    G      AIT+ +++  ++  +++ V A +   +  K 
Sbjct: 457 SLFGVLIIALVYVPIFALTGVEGKMFHPMAITVVMALTAALVLSLTFVPAAVALFVTGKV 516

Query: 520 MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
            ++          L    +     +      G   L  +  +              +G I
Sbjct: 517 QETESRFMRFSRGLYDRALQWALRKRVAVVAGAVALVVVSGLAASRMGSEFIPNLDEGDI 576

Query: 580 QL 581
            +
Sbjct: 577 AM 578



 Score = 49.3 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 75/215 (34%), Gaps = 9/215 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
             ++ S+ +     Q    +    V +          + + E+ +K   E+        T 
Sbjct: 812  QDVASIAVEKGPNQISREDGKRRVVVTANVRGRDLGSFITEVRQKVGAEVEVDPGYWITY 871

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF- 714
                +      ++  + V  + + +   ++  F+      A+    + +  T G  AL  
Sbjct: 872  GGTFEQLISAAQRLQLVVPATLLLIFGLLFALFRSVKD-AAVVFSGVPLALTGGVGALLM 930

Query: 715  -GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
              +  +++A    + L G +V + VV+   +R    L        + I +     L   +
Sbjct: 931  RDLPLSISAGVGFIALSGVAVLNGVVMLSFIR---TLRAEGRGLDEAIFEGALTRLRPVL 987

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGI 805
             T++ A +  +PMA     G  V    A  +  GI
Sbjct: 988  MTALVASLGFVPMAFNVGAGSEVQRPLATVVIGGI 1022


>gi|291288636|ref|YP_003505452.1| acriflavin resistance protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885796|gb|ADD69496.1| acriflavin resistance protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 1068

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 67/563 (11%), Positives = 179/563 (31%), Gaps = 32/563 (5%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFV 66
             ++ +++  I LLIA  N    S +   P                  + V      + V
Sbjct: 11  KRVVVNVVFMI-LLIAGVNSFNTSPVQNMPPVDIGQVF---------VYTVYYGASPEDV 60

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    ++    L+       S  +  + + + F D     ++ D++ L +  + + L
Sbjct: 61  ESLVTKKLEDAIEDLENVEYIQSSSMRNISVMQVKFIDDSDYRDLYDEMRLKILNIKNDL 120

Query: 127 NVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGS 186
             +  + L +    +    V++ N    V +  ++   E   +    +           S
Sbjct: 121 PDEVDEPLFIYVDTEAFLPVIAVNIAGDVSNKTLDLLAE---ELKTDLRKVPMVESISTS 177

Query: 187 HRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDK 246
                +      P RLR+   + A+ +      N+     +F                  
Sbjct: 178 GDFEDEFHVALSPQRLREYGVSFAEAAGAVQQANSKIPAGVFRKGDTEY----------- 226

Query: 247 VEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAP 306
              +G   +   A          V     +    R  ++T           +   V    
Sbjct: 227 AMDTGERFSSQDAVL------DAVVRKDGDGNFIRVRDLTVYAGLSNRDPDIMVSVNGKS 280

Query: 307 VINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTC 366
            +   +   +   +G           +     +         + +      S  +  G  
Sbjct: 281 TVQLIVKKLRDGDTGTIAKAVRQEADSFAERHAGEGISVYYTQDSTLEIEDSVHVLGGNM 340

Query: 367 AIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGL 426
            +    V+++L++++ +    ++    I  +++  + + SL G ++   +I   VL  G+
Sbjct: 341 LMGIAFVMVILWLVLGFRN-AMLTSVGIPFSILFAVLMNSLFGYSINTITIFSFVLISGI 399

Query: 427 AVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVR 486
            VD ++++ E I    +  +S+  ++  G +  +  +  S +T ++A V +F   G    
Sbjct: 400 IVDDSVIIVENIYRHLQNGKSMAKAVRDGTAEIFIPVTSSALTTILAFVPMFIMTGSTGD 459

Query: 487 GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRAR 546
            FA  + L+++ ++  ++     ++         K +  +       +   +        
Sbjct: 460 FFAF-IPLTVIFALAASLLEALIILPVHYYEWGPKKVSSHDGDDLAHVKSGVFAHAWNFY 518

Query: 547 FWGVGISILFSICSICLLFTHGL 569
              V   +  S+ ++ ++     
Sbjct: 519 SRVVTSLLNNSVKTLVVMTVVFW 541



 Score = 76.3 bits (185), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 27/224 (12%), Positives = 73/224 (32%), Gaps = 8/224 (3%)

Query: 582 GVLANRPVDLSVVRSNLESLQIGDISFQNFDG-EKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            V  +   +   VR       + +              V+L  +         + + V++
Sbjct: 244 VVRKDGDGNFIRVRDLTVYAGLSNRDPDIMVSVNGKSTVQLIVKKLRDGDTGTIAKAVRQ 303

Query: 641 KITEIVPLSTIQNTEIVGPKISRELIRKGIVGV----IISAIAMLIYIWIRFKWYFALGA 696
           +          +   +   + S   I   +  +    ++    +++ +W+   +  A+  
Sbjct: 304 EADSFAERHAGEGISVYYTQDSTLEIEDSVHVLGGNMLMGIAFVMVILWLVLGFRNAMLT 363

Query: 697 ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
              +   I   +   +LFG   N   + + + + G  V+D V++ + +    +      S
Sbjct: 364 SVGIPFSILFAVLMNSLFGYSINTITIFSFVLISGIIVDDSVIIVENI---YRHLQNGKS 420

Query: 757 FRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIP 800
               +     E       +++   ++ +PM +  GS    FA  
Sbjct: 421 MAKAVRDGTAEIFIPVTSSALTTILAFVPMFIMTGSTGDFFAFI 464



 Score = 60.1 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/188 (20%), Positives = 75/188 (39%), Gaps = 11/188 (5%)

Query: 606  ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP-KISRE 664
               + ++G+    V         +  +RV  +VK +  +I            G  + +  
Sbjct: 835  NVMRRYNGKPAITVTADITDNSGLTPSRVQNLVKTEFKDIAVKYPGVVVAFGGEFEETSR 894

Query: 665  LIRKGIVGVIISAIAMLIYIWI----RFKWYFALGAITTLILDITKTLGFFALFGIEFNL 720
              R   +  II+ +A+ + +       F+    L AI      I    G F L    F +
Sbjct: 895  AFRSLFMAFIIAILAIYLVLAAQFNDYFQPVLILSAIA--FAIIGVVYGLF-LTRSTFTV 951

Query: 721  TAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAF 780
             +  AV+ L G +VND +++ D M          ++ RD +  + ++ +   + T++   
Sbjct: 952  QSFIAVVGLAGVAVNDSLILIDFMN---ARRREGMALRDAVLTACSQRMRPVLITTVTTI 1008

Query: 781  ISVLPMAV 788
            + +LPMAV
Sbjct: 1009 LGLLPMAV 1016


>gi|198282328|ref|YP_002218649.1| acriflavin resistance protein [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|198246849|gb|ACH82442.1| acriflavin resistance protein [Acidithiobacillus ferrooxidans ATCC
           53993]
          Length = 1032

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 74/591 (12%), Positives = 171/591 (28%), Gaps = 48/591 (8%)

Query: 5   PWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDD 64
            +  ++ ++   +         L Q  LD FPS  P               + L  +   
Sbjct: 11  RFRGVILALALLVAGYGLYT--LSQVKLDAFPSFTPPL-------------VTLVTEAPG 55

Query: 65  FVNGFL----QMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                +            S             Q  + ITL+F +          V   L 
Sbjct: 56  LSPEQVAALVTQPIQNALSGTAGLQAMRSRSIQGLSVITLTFHNGTDIFRDRQIVAERLN 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  +L +  +   L   T     + +     D      +            Q+      
Sbjct: 116 TVAGQLPLGVRAPFLTPLTSATGVVQVLGLTSD--TRSLMTLRTLADWLLKPQLLSIPGV 173

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                    + +L  +  P +L +   +   +          +          R +   +
Sbjct: 174 ANVAIYGGQVRELQIQVQPEKLVRFGLSFQDVVRATQRATGVRGAGFLEDVNQRIAIRTE 233

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
                  ++                    V I   +    R  +V +       A+    
Sbjct: 234 GQSITAAQL------------------ANVVILRRQGADLRLGDVAQVVAAPAPAIGGAT 275

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                 VI        A            +        +  + L+            + +
Sbjct: 276 IEGKPGVILNVEEQYGANTLAVTRALKDRLQQLGPVLAAQGVSLHPDLFGQASYIETAIA 335

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    + A LV+ VLF+ +   +  L++  +I L+++  + +L+ LGA++   ++ G+
Sbjct: 336 HLRTALLVGAILVITVLFLFLFNARTALISATAIPLSLLTAIIVLNALGASINTMTLGGL 395

Query: 421 VLGIGLAVDSNILVNERIREENRKNQ------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            + IG  VD  I+  E I    R+N+      S+   +          +  +     +  
Sbjct: 396 AIAIGEVVDDAIIDVENIFRRLRENRARAQPSSIAKVVLASSLEVRGAVTYATFIVALVF 455

Query: 475 VV---LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V    L    G            ++  S+  A+++  A+   ++   + + +D   L + 
Sbjct: 456 VPVLSLSGVAGKLFAPLGEAYIAAVFASLAVALTVTPALAYLLLGRTQPRPLDPAWLCKL 515

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
             +   +  +  R     +   +L  + ++ +L + G N+  +F+    + 
Sbjct: 516 KEVQARLLTRAERHSRLLIVGIMLLFLAAMAVLQSFGSNFLPEFRERHFIV 566



 Score = 69.7 bits (168), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 75/230 (32%), Gaps = 14/230 (6%)

Query: 614 EKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVG- 672
           E    V L  +         V   +K ++ ++ P+   Q   +      +    +  +  
Sbjct: 277 EGKPGVILNVEEQYGANTLAVTRALKDRLQQLGPVLAAQGVSLHPDLFGQASYIETAIAH 336

Query: 673 -----VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
                ++ + + + +     F    AL + T + L +   +      G   N   +  + 
Sbjct: 337 LRTALLVGAILVITVLFLFLFNARTALISATAIPLSLLTAIIVLNALGASINTMTLGGLA 396

Query: 728 TLIGYSVNDKVV----VYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISV 783
             IG  V+D ++    ++ R+R+N +      S   ++  S  E  G   Y +    +  
Sbjct: 397 IAIGEVVDDAIIDVENIFRRLREN-RARAQPSSIAKVVLASSLEVRGAVTYATFIVALVF 455

Query: 784 LPMAVWGGSVIGSFAI---PMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
           +P+    G     FA         +  + + ++ +   +   +       
Sbjct: 456 VPVLSLSGVAGKLFAPLGEAYIAAVFASLAVALTVTPALAYLLLGRTQPR 505



 Score = 53.9 bits (127), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 85/246 (34%), Gaps = 14/246 (5%)

Query: 588  PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             V L  +    E +    I        +     +  Q            + K        
Sbjct: 787  MVPLRDLADIYEGVGPYAILETAGQPVQTVTAAVHGQALSEFVHAAEHRIHKDISFPPGT 846

Query: 648  LSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAI---TTLILDI 704
                        K   EL+   ++  +   I +L++I +R      L  +     LI  +
Sbjct: 847  YVVFSGAAEAQAKAQSELLMHALMAGVG--IVLLLFIALRRARALFLVLLNLPFALIGGV 904

Query: 705  TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKS 764
            T  L    L G   +L ++   +T+ G ++ + +++    +  +++   S   R+   + 
Sbjct: 905  TAVL----LTGSVLSLGSLVGFVTIFGITLRNSIMLISHYQHLVEVEGMSWG-REAAIRG 959

Query: 765  INETLGRSVYTSMAAFISVLPMAVWGGSVIGSF----AIPMAFGIVVAASSSIFIAAPIL 820
              E L   + T++   + +LP+A+  G+         A  +  G++ + + ++ +   + 
Sbjct: 960  AQERLVPILMTALVTALGLLPLALTSGAPGNEIEGPMAQVILGGLITSTALNLLVLPIMA 1019

Query: 821  LFIYDW 826
            L    +
Sbjct: 1020 LRFGRF 1025


>gi|57239199|ref|YP_180335.1| putative aminoglycoside efflux pump (acriflavine resistance protein
           D) [Ehrlichia ruminantium str. Welgevonden]
 gi|58579157|ref|YP_197369.1| putative aminoglycoside efflux pump (acriflavine resistance protein
           D) [Ehrlichia ruminantium str. Welgevonden]
 gi|57161278|emb|CAH58199.1| putative integral membrane transport protein [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417783|emb|CAI26987.1| Probable aminoglycoside efflux pump (Acriflavine resistance protein
           D) [Ehrlichia ruminantium str. Welgevonden]
          Length = 1039

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 62/547 (11%), Positives = 155/547 (28%), Gaps = 42/547 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +  N   + L  +I   G              ++ P                  H VL+ 
Sbjct: 9   LERNRVSIFLLIVILIFGSYS-----YFDIAKEKNPEIKKPVL---------SIHTVLQG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + +   +    ++    +K         +     + L F+     +   D V   + 
Sbjct: 55  MSSEDIEKLIIYPIEQEVMSIKGVTKVTSLAKNGYANVILEFSAGFDDKEALDNVRSKVD 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            + +KL  +    ++       + ++      D       + +    R    ++    + 
Sbjct: 115 IIRAKLPQEATFPVVNQENLGLLPVLNIALTGDLPDRALFKIA----RNLQAKLEGLSNV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                       L     P+ +        ++    +  N         V   + +    
Sbjct: 171 QNVKIIGNRKDVLEINVSPNAINMYNLQVHEVINSILNNNQFINIGNLDVTSSKYALHVS 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
            L+++  +I                    V+I     G           +        + 
Sbjct: 231 GLLKNVQDI--------------------VNIPIKTDGYSIVTVGDVATVKLIYQNDTEI 270

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
             +          S +   +   TI     +    +         I  +          +
Sbjct: 271 IRVNGQPSLVLEISKQPGKNILGTISQVKDMIHDTKDVLPHNLSIIYLQDQSEEISDVLN 330

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             +    +V+ L+++V+ MI +  K  L+   SI  + +L + ++ LLG TL +  +  +
Sbjct: 331 ELQ-NSILVSVLLVVVIMMIFMGTKTALLVAISIPGSFLLGIIVMYLLGYTLNIVILFSL 389

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++ IG+ VD  I+V E    +         +        +  +  + +T L+  + L  +
Sbjct: 390 IMAIGMLVDDAIVVTEYADRKMINGLGRKEAFKQAAYDMFWPVASATLTKLVVYIPLLLW 449

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G  ++   I +  ++  S   A+  +  +   I +        I  +         
Sbjct: 450 PGTTGEFMKYIPIALITTLSASWIMALIFIPVLGSMIGKPSVTDKQSIAKIMAIETGKFT 509

Query: 538 IAIQFMR 544
              +F +
Sbjct: 510 NLGRFSK 516



 Score = 46.6 bits (108), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/138 (15%), Positives = 53/138 (38%), Gaps = 5/138 (3%)

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           + I      AL    ++       +    L G   N+  + +++  IG  V+D +VV + 
Sbjct: 347 MMIFMGTKTALLVAISIPGSFLLGIIVMYLLGYTLNIVILFSLIMAIGMLVDDAIVVTE- 405

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAF 803
                +     +  ++   ++  +        ++   +  +P+ +W G+  G F   +  
Sbjct: 406 --YADRKMINGLGRKEAFKQAAYDMFWPVASATLTKLVVYIPLLLWPGTT-GEFMKYIPI 462

Query: 804 GIVVAASSSIFIAAPILL 821
            ++    S+ +I A I +
Sbjct: 463 ALIT-TLSASWIMALIFI 479



 Score = 40.4 bits (92), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 19/145 (13%)

Query: 694  LGAITTLILDITKTLGFFALFGIEFNLTAV-AAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
               +T + L  +       +    F++      ++ L G  VN+ +++ D    N+    
Sbjct: 883  FIIMTAIFLSTSCVFLGLFVTNHVFSVVMSGVGIIVLAGVIVNNNILLIDAFYANISNIN 942

Query: 753  TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-WGGSVIG--------------SF 797
                 +D I K+    L   + T +   + +LPM        +                 
Sbjct: 943  ---DKKDAIIKASISRLRPILLTVITGIVGLLPMVFRISFDFVNQRVIYNSPSSQLWCEL 999

Query: 798  AIPMAFGIVVAASSSIFIAAPILLF 822
            +  ++ G+++A   ++F    +L+ 
Sbjct: 1000 SYTISIGLLLATVITLFFTPALLVL 1024


>gi|38234726|ref|NP_940493.1| putative integral membrane protein [Corynebacterium diphtheriae
           NCTC 13129]
 gi|38200990|emb|CAE50710.1| Putative integral membrane protein [Corynebacterium diphtheriae]
          Length = 746

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 82/672 (12%), Positives = 191/672 (28%), Gaps = 49/672 (7%)

Query: 199 PSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGAT 258
           P  +  L+     +   ++    S++G+         +   ++    + +  G  +   T
Sbjct: 17  PIVIVALILAVYTLFGARLADRMSQEGWEDPGSSSAQAAAIEHDTFGR-DNDGDVILLFT 75

Query: 259 ANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQ 318
           A            I       +       D +           +        A  S +  
Sbjct: 76  AKDGIAHSPSFDKIKKYLDSLKTDHSDHVDAVTSYFDKRNAQLISKDGTTAFAAVSLRGD 135

Query: 319 ISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLF 378
                    A       +   + +++          D G     K    +   +V ++L 
Sbjct: 136 GEQTLKDFRAIESDLHPQFPEVTVQVAGSTAVADALDKGMSGDIKRAEVVALPVVAVLLL 195

Query: 379 MIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA---GIVLGIGLAVDSNILVN 435
           ++        +      L+++ +L +LS+L   + +   A     +LG+GLA+D  + + 
Sbjct: 196 IVFGSVVAAGMPLIVGILSILGSLGVLSILAGFVQVNVFAQSVVTLLGLGLAIDYGLFMV 255

Query: 436 ERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLS 495
            R REE    + +  ++ +  + A  T+  S     +A   L  F    ++  A     +
Sbjct: 256 SRFREELDAGRPIPDAVRITTATAGKTVTFSAAMVAVALSGLLVFPQAFLKSVAYGAISA 315

Query: 496 ILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI---PDCIAIQFMRARFWGVGI 552
           + ++   +I+++ A+   + +     ++         L       I    M+        
Sbjct: 316 VGLAALLSITVLPALFGMLGKNIDKWTLRRTSRKATSLRSTAWYRIPAWAMKHSALVTVG 375

Query: 553 SILFS-----------------------ICSICLLFTHGLNYGIDFKGGIQLGVLANRPV 589
            +                                  +   N+       I+L +      
Sbjct: 376 IVAVLLGLTLPLAGVKFGGINETYLPPNNTVRTAQASFDENFPHFRTEPIKLVITGATNQ 435

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
            L  V      ++     F+     K+    L     +     +V+E ++          
Sbjct: 436 QLVDVYQQANKVEGLTDRFKPSSATKDGTTVLSAGIENREDNAKVVEQLRAIDAPEGVSV 495

Query: 650 TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTL 708
            I     +  +    L  K     I    A  + + + F        AI   IL +  TL
Sbjct: 496 YIGGIPAMEVESIEALFDKLPWMAIYIVTATFLLMSLVFGSMILPAKAIIMTILGLGSTL 555

Query: 709 GFF----------ALFGIE----FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTS 754
           G            +LF        +   V  +  + G S + +V +  RM +        
Sbjct: 556 GILTAMFVDGVGSSLFNFSAGPLMSPVLVLIMAIVYGLSTDYEVFLVSRMVE---ARAKG 612

Query: 755 ISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVA-ASSSI 813
            S  + I      T G     ++   +           ++   A  M   ++       +
Sbjct: 613 ESTDEAIKYGTAHTGGIITAAALIMIVVCGAFGFSEIVMMKYIAFGMVVALLFDATIIRM 672

Query: 814 FIAAPILLFIYD 825
            +   ++  + +
Sbjct: 673 MLVPAVMHLLRE 684


>gi|23016754|ref|ZP_00056507.1| COG3696: Putative silver efflux pump [Magnetospirillum
           magnetotacticum MS-1]
          Length = 1044

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 77/568 (13%), Positives = 162/568 (28%), Gaps = 41/568 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV+L ++       +A+ +      LD  P       I          +  +    
Sbjct: 11  KNVFLVLLATLFIVGAGTLAVKHL----PLDALPDLSDVQVI---------LYTEVPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          + +            + + + F D         +V  +L   
Sbjct: 58  PQVVEDQVTYPLTTAMLSVPRSKTVRGFSFFGVSFVYIIFEDGTDIYWARSRVLEYLSFA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             +L       L    T             D       E           Q+  +E   +
Sbjct: 118 AKRLPAGVTPTLGPDATGVGWVYQYVVLAKD---RTLAELRTTQDWYLRYQLAKAEGVAE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
             G    + Q     DP RL+      AK++      N    G +  +         +  
Sbjct: 175 VAGVGGFVQQYQVVVDPQRLQAYNIPLAKITEVIRKSNIDVGGRVVELAETEFVVRGRGY 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +I                      +   E G              P        +
Sbjct: 235 LRGIADIE-------------------QLVLKSERGTPVLLRDVARVELGPDERRGLTEL 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    IE      A + +G                 L +    
Sbjct: 276 NGEGEVVSGIVLQRFGQNALDVIERVKAKIAEVSSGLPEGVTIKAVYDRSDLILRAVETL 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K T    + +V  V  + +L+ +  LVA   + + V++   ++  LG T  + S+ G+ +
Sbjct: 336 KHTLIEESLIVAAVCLVFLLHLRSALVAIIMLPVGVLIAAIVMQALGMTSNIMSLGGVAI 395

Query: 423 GIGLAVDSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
            +G  VD+ I++ E   +     +   S   +L         ++F   +   ++ + +F 
Sbjct: 396 AVGAMVDAAIVMIENAHKHLERMKPGDSRAEALIAAAIEVGPSLFFGLLIITVSFLPVFT 455

Query: 480 ---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPD 536
                G   +  A T   S+  +   ++++V  +M+  IR K +                
Sbjct: 456 LEAQEGRLFKPLAFTKTFSMAGAALLSVTLVPVLMMLFIRGKIIPEHRNPINRALIWSYR 515

Query: 537 CIAIQFMRARFWGVGISILFSICSICLL 564
            +    M+A+   + +++     S   L
Sbjct: 516 PMITGVMKAKIVTIAVALAALAASWYPL 543



 Score = 56.2 bits (133), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/226 (15%), Positives = 73/226 (32%), Gaps = 14/226 (6%)

Query: 621  LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
            +     D      V +  K     +        T     +     I K  + V ++   +
Sbjct: 814  IYVDIRDRDIGGYVADARKAVAESVKMPPGYFVTWSGQFEYMERAIEKLKIVVPLTIAII 873

Query: 681  LIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV 739
             + +++ F +    L  + +L   +   L    + G   ++      + L G +    VV
Sbjct: 874  FLLLYLNFKRVTETLIVMLSLPFALVGGLWLQWVLGYNMSVAVAVGYIALAGVAAETGVV 933

Query: 740  VY---DRMRKNMKLYT-------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
            +    D     +K          T     + I +   E +   + T +A    +LP+   
Sbjct: 934  MLIYLDHALNELKAKRVAEGLPFTRADLYEAIMEGAVERVRPKMMTVVAIMAGLLPIMWS 993

Query: 790  ---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
               G  V+   A+PM  G+V +   ++ +   I   I      N +
Sbjct: 994  TGTGSEVMRRIAMPMVGGMVSSTILTLIVIPAIYGLIKQRGLPNRK 1039



 Score = 49.7 bits (116), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 3/155 (1%)

Query: 676 SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
           S I   + +        AL AI  L + +          G+  N+ ++  V   +G  V+
Sbjct: 343 SLIVAAVCLVFLLHLRSALVAIIMLPVGVLIAAIVMQALGMTSNIMSLGGVAIAVGAMVD 402

Query: 736 DKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
             +V+ +   K+++      S  + +  +  E      +  +   +S LP+         
Sbjct: 403 AAIVMIENAHKHLERMKPGDSRAEALIAAAIEVGPSLFFGLLIITVSFLPVFTLEAQEGR 462

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +    A    F +  AA  S+ +   +++     +
Sbjct: 463 LFKPLAFTKTFSMAGAALLSVTLVPVLMMLFIRGK 497


>gi|189468561|ref|ZP_03017346.1| hypothetical protein BACINT_04964 [Bacteroides intestinalis DSM
           17393]
 gi|189436825|gb|EDV05810.1| hypothetical protein BACINT_04964 [Bacteroides intestinalis DSM
           17393]
          Length = 1034

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 75/619 (12%), Positives = 175/619 (28%), Gaps = 33/619 (5%)

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + V   +    +   +          S     + + + F            V+  L  V
Sbjct: 58  AEEVEQLVTFPVETAVNGATGVRRVRSSSTNGFSVVWVEFDWDTDIYLARQIVSEKLAVV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +  L     K  L   +     +++     D      ++           ++  +    Q
Sbjct: 118 SESLPTGVGKPTLGPQSSILGEMLIIGLTADSTSM--LDLRTIADWTIRPRLLSTGGVAQ 175

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + +   + DP R+R    T  ++        N          +  +      L
Sbjct: 176 VAVLGGDIKEYQIQLDPERMRHYGVTLNEIMT-VTREMNLNANGGVLYEYGNEYIVRGVL 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             D+V+                    V   +          ++   +IG  L  +     
Sbjct: 235 STDRVD--------------QLARAVVRGGTASGSAPILLEDIADVHIGAKLPKLGTASE 280

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +    A  +   T +    L  + +     +K++    R       S    
Sbjct: 281 RGKAAVLLTVTKQPATSTLELTDKLEASLEDLQKNLPPDVKVSTDIFRQSRFIESSIGNV 340

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + +       V+IVLF+ +   +  +++  ++ L++I +L  L  +G T+   S+ G+ +
Sbjct: 341 QKSLFEGGIFVVIVLFLFLANVRTTVISLVTLPLSLITSLVTLHYMGFTINTMSLGGLAI 400

Query: 423 GIGLAVDSNILVNERIREENRKNQ--------SVFCSLDMGFSRAYSTIFDSNITALIAT 474
            IG  VD  I+  E + +   +N+        S+   +          I +S +  +++ 
Sbjct: 401 AIGSLVDDAIVDVENVYKRLHENKLKPVEERLSILEVVFNASKEVRMPILNSTLIIVVSF 460

Query: 475 VVLFFFGGGAVR---GFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           V LFF  G   R      I   +++  S   A+++   +  +++   K K    +  S  
Sbjct: 461 VPLFFLTGMEGRMLVPLGIAFIVALAASTVVALTVTPVLCSYLLGKDKKKEEKESSDSYV 520

Query: 532 FLIPDCIA-----IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                              +        LF +   C             +G   + + + 
Sbjct: 521 ARKMKQWYGAALAFVLGHKKIVLGSTIGLFVVALACFFTLGRSFLPPFNEGSFTINISSL 580

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             + L          +   +S            R +            +E   +      
Sbjct: 581 PGISLEESDKMGHRAEELLLSIPEIQTVARKTGRAELDEHALGVNVSEIEAPFELKDRSR 640

Query: 647 PLSTIQNTEIVGPKISREL 665
                +  E +G  +   +
Sbjct: 641 SEMVAEVREKLGTIVGANI 659



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 73/207 (35%), Gaps = 11/207 (5%)

Query: 621 LQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM 680
                     +  + ++ K    ++   + I             + +    G I   I +
Sbjct: 296 TSTLELTDKLEASLEDLQKNLPPDVKVSTDIFRQSRFIESSIGNVQKSLFEGGIFVVIVL 355

Query: 681 LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVV- 739
            +++         + ++ TL L +  +L      G   N  ++  +   IG  V+D +V 
Sbjct: 356 FLFLA---NVRTTVISLVTLPLSLITSLVTLHYMGFTINTMSLGGLAIAIGSLVDDAIVD 412

Query: 740 ---VYDRMRKN-MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGS--- 792
              VY R+ +N +K     +S  +++  +  E     + +++   +S +P+    G    
Sbjct: 413 VENVYKRLHENKLKPVEERLSILEVVFNASKEVRMPILNSTLIIVVSFVPLFFLTGMEGR 472

Query: 793 VIGSFAIPMAFGIVVAASSSIFIAAPI 819
           ++    I     +  +   ++ +   +
Sbjct: 473 MLVPLGIAFIVALAASTVVALTVTPVL 499



 Score = 60.9 bits (145), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 90/235 (38%), Gaps = 9/235 (3%)

Query: 598  LESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIV 657
            +  ++                + +     D   ++ V ++  +   +I            
Sbjct: 800  IAEVRSAMGPNTISRENVKRKIVISANVADRDLRSVVNDIQARVDKDIKLPEGYHLEYGG 859

Query: 658  GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI- 716
              +  +   R  ++  ++S   + + ++  F+      AI  + L +    G FAL    
Sbjct: 860  QFESEQAASRTLLLTSLMSIAVIFLLLYHEFRSVKE-SAIILINLPLALIGGVFALLMTT 918

Query: 717  -EFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
             E ++ A+   ++L G +  + +++      N       ++  D + +   + L   + T
Sbjct: 919  GEVSIPAIIGFISLFGIATRNGMLLISHY--NHLQREEGLNVYDSVIRGSMDRLNPILMT 976

Query: 776  SMAAFISVLPMAV---WGGSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
            ++++ ++++P+A+     G+ I S  A  +  G++ +   + FI   + L ++  
Sbjct: 977  ALSSALALIPLALGGDLPGNEIQSPMAKVILGGLLTSTFLNGFIIPIVYLMMHRK 1031


>gi|301060989|ref|ZP_07201788.1| Cation efflux system protein CusA [delta proteobacterium NaphS2]
 gi|300444908|gb|EFK08874.1| Cation efflux system protein CusA [delta proteobacterium NaphS2]
          Length = 1162

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 68/540 (12%), Positives = 154/540 (28%), Gaps = 39/540 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   +V+    I   G++      + ++ +D  P       I          +     
Sbjct: 10  LQNRMMVVLSTVFIIIAGVIA-----MEKTPVDAIPDLSDVQVI---------VYTEYPG 55

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                V   +          +    +         + + + F D         +V  +L 
Sbjct: 56  QGPRVVEDQVTYPLTTAMLSVPFAKVVRGYSFFGYSFVYIIFEDGTDLYWARSRVLEYLN 115

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V  KL       L    T                     +           ++      
Sbjct: 116 FVAGKLPSGVTPTLGPDATGVGWVYEYV-LKDTTGTKDLQQLRSIQDWFLRYELASVPGV 174

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +  G    + Q   E DP++L     +  K+       N    G +  +  +       
Sbjct: 175 SEVAGIGGFVKQYQVEVDPNKLLAFDLSIEKVKRAIQKSNMDVGGRLLEMAEMEFMVRGL 234

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++   ++                    + +  D  G     +   D    P       
Sbjct: 235 GYIQSLNDLR------------------QIALGVDGSGTPILLKQVADIHLGPELRRGVL 276

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
                      I   ++  +    I         L  G                 L +  
Sbjct: 277 EWDGRGEAVGGIVVMRSGENALQVIRNVKRRLKELERGLPAGVEIEAGYNRADLILRAIH 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
             K        +V ++  + +L+ +   VA F++ + ++++   + +LG    + S++GI
Sbjct: 337 TLKSKLVEELTVVALICLIFLLHFRSAFVAVFTLPVGILMSFMAMKILGINANIMSLSGI 396

Query: 421 VLGIGLAVDSNILVNERIREE--NRKNQSVFCS-LDMGFSRAYSTIFDSNITALIATVVL 477
            + IG+ VD+++++ E   +       +    + +        S +F S +   ++ V +
Sbjct: 397 AIAIGVMVDASVVLVENAHKHLVRDNGKKPHTAIILDSAKEVGSALFYSLLIITVSFVPV 456

Query: 478 FF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F      G   +  A T   ++  +   AI+I+  +M F +R K + S           I
Sbjct: 457 FSLTEQSGRMFKPLAYTKTFAMAAAAVLAITIIPVLMTFFVREKTLSSETTRKRRILIWI 516



 Score = 64.7 bits (155), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 85/264 (32%), Gaps = 16/264 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       + L+ +           I  +N        V L+     +  +     +  
Sbjct: 900  LVTAPTGAHIPLAQLAHISIHKGPAAIKTENSRPSAWIFVDLKGVDVGTYVKNAKAVVSS 959

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
            +    +              +  + L    +V + ++ I +L+Y+     +  A   + +
Sbjct: 960  EIKLPVGYSLVWSGQYQYMQEARKRL--NLVVPLTLAIIFVLLYMHF-HSFSEAFLVMAS 1016

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY--------DRMRKNMKLY 751
            L   +   +    L     ++  V   + L G +    VV+          R R+     
Sbjct: 1017 LPFALVGGVWLLYLLNYNLSVAVVVGFIALAGLAAETGVVMLVYLDEAYARRGRE--GTM 1074

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
            T+  + R+ I +   E +   + T     I +LP+      G  V+   A PM  G++ +
Sbjct: 1075 TSRGALREAILEGSVERVRPKLMTVSTTLIGLLPIMWGTETGSQVMKRIAAPMVGGLISS 1134

Query: 809  ASSSIFIAAPILLFIYDWRAKNAR 832
               ++ I   +      W+ +  +
Sbjct: 1135 TVLTLIIIPAVYDLWKGWKLRKGK 1158



 Score = 54.7 bits (129), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 49/124 (39%), Gaps = 4/124 (3%)

Query: 674 IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYS 733
           +++ I ++  +  R     A  A+ TL + I  +     + GI  N+ +++ +   IG  
Sbjct: 348 VVALICLIFLLHFR----SAFVAVFTLPVGILMSFMAMKILGINANIMSLSGIAIAIGVM 403

Query: 734 VNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSV 793
           V+  VV+ +   K++           +I  S  E      Y+ +   +S +P+       
Sbjct: 404 VDASVVLVENAHKHLVRDNGKKPHTAIILDSAKEVGSALFYSLLIITVSFVPVFSLTEQS 463

Query: 794 IGSF 797
              F
Sbjct: 464 GRMF 467


>gi|302560180|ref|ZP_07312522.1| membrane protein YdfJ [Streptomyces griseoflavus Tu4000]
 gi|302477798|gb|EFL40891.1| membrane protein YdfJ [Streptomyces griseoflavus Tu4000]
          Length = 752

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 71/522 (13%), Positives = 167/522 (31%), Gaps = 67/522 (12%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL---PSIAGIVLGI 424
           I  G+  +VL +         +   +  + V + +A ++ L +TL L    SI   ++G+
Sbjct: 197 IGIGVAAVVLVITFGSLLAAGLPLLTAIVGVGIGVASITALASTLDLGSTTSILASMIGL 256

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            + +D  + V  R R E  + +    +       A S +  + +T +IA V L       
Sbjct: 257 AVGIDYALFVVSRYRAELAEGREREEAAGRAVGTAGSAVVFAGLTVVIALVGLSVVNIPM 316

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM-------KSIDINPLSRFFLIPDC 537
           +    +    ++ +++  A++++ A++ +  R  +                         
Sbjct: 317 LTKMGVAAAGTVALAVLIALTLIPALLGYAGRRVRPAGEKSKLLGGGRAAKKPRRPNMGT 376

Query: 538 IAIQFMRARFWGVGI------------------------SILFSICSICLLFTHGLNYGI 573
               F+  R   V +                        S   S             +G 
Sbjct: 377 RWASFVVRRPVAVLLLGVVGLGAAAVPAASLELGLPDDGSQSTSTTQRRAYDLLSEGFGP 436

Query: 574 DFKGGIQLGVLANRPVDLSVV-------RSNLESLQIGDISFQNFDGEKNFLVRLQYQPG 626
            F G + + V A    D   V          L+++     +  N  G+   +  +     
Sbjct: 437 GFNGPLVVVVDAKDSDDPKAVFQQAGDDIKGLDNVVNVSPAAPNEAGDTATITVIPDSKP 496

Query: 627 DSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAM-----L 681
            SV    ++  ++    +I   +           ++ ++ +K    ++   + +     L
Sbjct: 497 SSVTTEDLVHDIRDTGADIKAGTEADVLVTGSTAMNIDVSQKLNDALVPYLVLVVGLAFL 556

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFA----------LFGIE-----FNLTAVAAV 726
           + I +       L A    +L +   LG             L G+E      ++  +  V
Sbjct: 557 LLIVVFRSILVPLKAALGFLLSVLAALGAVVAVYQWGWLSGLMGVEETGPIMSMMPIFMV 616

Query: 727 LTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
             + G +++ +V +  RMR+    +         +      +  R V  +    ++V   
Sbjct: 617 GVVFGLAMDYEVFLVTRMRE---AHVHGEKPAQAVVTGFKYS-ARVVTAAAVIMMAVFSG 672

Query: 787 AVWGGS-VIGSFAIPMAFGIVVAAS-SSIFIAAPILLFIYDW 826
            +     ++      +A  ++  A    + I   +L  + D 
Sbjct: 673 FIGSSEQMVKMIGFGLAVAVLFDAFVVRMAIVPAVLALLGDK 714


>gi|75910931|ref|YP_325227.1| acriflavin resistance protein [Anabaena variabilis ATCC 29413]
 gi|75704656|gb|ABA24332.1| Acriflavin resistance protein [Anabaena variabilis ATCC 29413]
          Length = 1029

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 71/644 (11%), Positives = 190/644 (29%), Gaps = 39/644 (6%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M N  +  +   ++  + + +   +          P   P+  +            V   
Sbjct: 1   MNNLFYQNVRLLILTVLAIAVWGLSSFFSLPRIEDPEITPRFAV---------ITTVFPG 51

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFL 119
              + V   +    ++    +++      + R   + IT+   D     + +  +V   +
Sbjct: 52  AAPERVETLITDKLEQSLFEVEEINNIESTSRLGFSSITVELNDTINDVDPVWSRVRAKI 111

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISES 179
                 L           +  K  +++++     +   +    S    ++  DQI +   
Sbjct: 112 NDTIPLLPSGAATPKFEQSKPKANALIVALTWDLKSAPNYAILSRWA-QELDDQIRLIGG 170

Query: 180 TIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGN 239
           T +         ++  E +P +L  L  T   +S   +  +                   
Sbjct: 171 TEKVEQFGTPQEEIAIEVNPKQLTNLGLTIQSLSQQILQSDAKVAAGQLRSNQSNLLLEI 230

Query: 240 QYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLD 299
              ++    ++                   + I                     L    +
Sbjct: 231 NGELDSLDRLN------------------RLSIQSGNSSNVVRLGDIAQIKKGILDPPRE 272

Query: 300 GRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSD 359
             ++            ++Q   +     A       +          +            
Sbjct: 273 LALVNGRRAIAISAFVESQQRLDAWAAIANTTLKKFQQQLPKGVGLQILFDQSHYVEQRL 332

Query: 360 SIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAG 419
           +       I   ++++ + + ++  K  L+   ++ L+V +    + LLG  L   S+ G
Sbjct: 333 NEVLMNL-ITGAVLVVGITLFMMGWKSSLIVGSALPLSVFMVFGSMKLLGVPLHQISVTG 391

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           +++ +GL +D+ I+V + ++   R+  +   ++       +S +  S  T+++A V +  
Sbjct: 392 LIIALGLLIDNAIIVVDEVQIYLREGLTPKKAVATTVREIFSPLLASTFTSVLAFVPIAT 451

Query: 480 FG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSR 530
                G       +T+ L+++ S+F A++++ A+   +  +K          +  +    
Sbjct: 452 APGGTGEFTGTIGVTVILALVSSLFLALTVIPALAGRLHYWKPTPVSGSWWQVGFSHHHL 511

Query: 531 FFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVD 590
                  +   F R         IL     + L       +    +G   L         
Sbjct: 512 GQFYSWSLDRTFSRPLLSIALSLILPLWGFMSLANLEQQFFPPTDRGQFYLNFELPIQAS 571

Query: 591 LSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
           L   +S +   +   +        + F+ +       +V Q R 
Sbjct: 572 LQQTQSQVTQARELMLRHPEIADVQWFIGKSAPPFYYNVIQNRE 615



 Score = 82.0 bits (200), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/195 (13%), Positives = 77/195 (39%), Gaps = 4/195 (2%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             +     KK  + +P                + + + ++ +I  A+ ++        W 
Sbjct: 298 AAIANTTLKKFQQQLPKGVGLQILFDQSHYVEQRLNEVLMNLITGAVLVVGITLFMMGWK 357

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            +L   + L L +    G   L G+  +  +V  ++  +G  +++ ++V D   +     
Sbjct: 358 SSLIVGSALPLSVFMVFGSMKLLGVPLHQISVTGLIIALGLLIDNAIIVVD---EVQIYL 414

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
              ++ +  +  ++ E     + ++  + ++ +P+A   G   G F   +   +++A  S
Sbjct: 415 REGLTPKKAVATTVREIFSPLLASTFTSVLAFVPIATAPGGT-GEFTGTIGVTVILALVS 473

Query: 812 SIFIAAPILLFIYDW 826
           S+F+A  ++  +   
Sbjct: 474 SLFLALTVIPALAGR 488



 Score = 78.6 bits (191), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 37/205 (18%), Positives = 73/205 (35%), Gaps = 7/205 (3%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                   L      +               G  +S  +   G++ +I+ A  +L +   R
Sbjct: 831  QTDFQNRLTASNFTLPSGYSWDFGGEEGERGDALSNLISTVGVLMIIMIASLVLTFSSFR 890

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 ++  +   IL +   LG  ALF   F  TA+  ++ LIG +VND +VV   +   
Sbjct: 891  ---LASIILVVA-ILSMGLGLGSLALFNYPFGFTAILGMIGLIGVAVNDSIVVLSSLN-- 944

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
                      R    K +  +    + T++   I   P+ +         AI +  G+  
Sbjct: 945  -HDPKARQGDRYAARKVVIRSTRHVIATTLTTIIGFTPLLLDTSGFWPPLAITIVGGLGG 1003

Query: 808  AASSSIFIAAPILLFIYDWRAKNAR 832
            A   +++    + L +     K+++
Sbjct: 1004 ATLIALYFVPSVYLLLQRSLVKDSK 1028


>gi|88858545|ref|ZP_01133187.1| AcrB/AcrD/AcrF family protein [Pseudoalteromonas tunicata D2]
 gi|88820162|gb|EAR29975.1| AcrB/AcrD/AcrF family protein [Pseudoalteromonas tunicata D2]
          Length = 1043

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 74/684 (10%), Positives = 189/684 (27%), Gaps = 53/684 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAM-PKNRISLGLDLRGGSHLVLE 59
           ++N   +V++  +I   GL+        +  +   P+   P+  I  G            
Sbjct: 8   LKNPASVVVILVLIMLFGLISVF-----KLPIQLTPNIEQPQISIFSG----------WR 52

Query: 60  VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFL 119
               + +   +    +               + Q    ITL+F      +     V   L
Sbjct: 53  SAAPEEIESVIIEPLENAVKNTPGAIDVTTQIGQGNGSITLTFEVGADMQQAMLDVLNNL 112

Query: 120 QGVNSKLNVDPKKNLLVTTTEKEISIVL----SQNNIDQVISHAIEQSME---IIRQRID 172
                 L +D    ++                +   +      +++ S     I      
Sbjct: 113 NQA-PPLPLDAIDPIISAGGNAGPGSGGPTAATLLVVPTADVESVDMSAYQKVIEDVIEP 171

Query: 173 QIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRF 232
           ++   +   +   + +   +L    DP +   L  +   M+       +           
Sbjct: 172 RLARIQGVARVFMASQRPRELRVSFDPHKAAALGISINDMTRTLANSRD----------- 220

Query: 233 LRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGK 292
           +     +    +  V  +G               + + D+       R  +      +  
Sbjct: 221 VSGGIADVGRRQYTVRFTG-----------QYNTQNLGDMRIGYSNQRPIYLRDVATVED 269

Query: 293 PLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIK--LNIVEER 350
            L       +           +     +    ++   I    L  G+L        +   
Sbjct: 270 TLVDRQAMTLRNGKPAYYITMTRSNDSNTVAVLDELNIAIKELNDGALQEHGLAIELSYD 329

Query: 351 NVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGA 410
                  +  + K    +   L   +L++        L+   +I +++++    L++   
Sbjct: 330 ASVHIRNALDLVKSNLGLGVLLACGILWLFFRGFGPTLIIAATIPVSLMVAFLALNIFDR 389

Query: 411 TLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITA 470
           +L + S+AG+   +GL +D+ I+V E I            +   G  +    +F S  T+
Sbjct: 390 SLNVVSLAGLAFAVGLVLDAAIIVQENINRLRADGMENNKAALKGAVQVSGALFASTATS 449

Query: 471 LIATVVLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINP 527
           +   + + F     G      A+T+ ++++ S  +A++I+     +++            
Sbjct: 450 VAIFLPILFMAGIEGQLFSDLALTLSIAVIASFVSAVTIIPIASKYLLTQPAKADPFAAY 509

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
                     +     +   W   + +   I +   L            G     +    
Sbjct: 510 WQSLTQWVMKLTNSKTKQWSWIASLLLGSVIATWAFLPQTDFMPRAPTDGFF-YSLNTPP 568

Query: 588 PVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVP 647
             ++  + + + S         ++ GEK   +R              +        + + 
Sbjct: 569 GGNIEFMEAEIASRVKQ-RLMPHYTGEKLPKIRNFNFYVFGSNAGGFIYADDPLHVQELM 627

Query: 648 LSTIQNTEIVGPKISRELIRKGIV 671
                      P     L R  ++
Sbjct: 628 DVARNEIFAGLPDTQVFLFRGSMI 651



 Score = 62.4 bits (149), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/407 (12%), Positives = 118/407 (28%), Gaps = 16/407 (3%)

Query: 420 IVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF 479
           I L   +  D    + + +   N+       ++D   S   +    S        +V+  
Sbjct: 91  ITLTFEVGADMQQAMLDVLNNLNQAPPLPLDAIDPIISAGGNAGPGSGGPTAATLLVVPT 150

Query: 480 FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIA 539
               +V   A    +  +I    A     A +    +  +   +  +P     L    I+
Sbjct: 151 ADVESVDMSAYQKVIEDVIEPRLARIQGVARVFMASQRPRELRVSFDPHKAAALG---IS 207

Query: 540 IQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLE 599
           I  M                     +T       + +    + +  +    + +      
Sbjct: 208 INDMTRTLANSRDVSGGIADVGRRQYTVRFTGQYNTQNLGDMRIGYSNQRPIYLRDVATV 267

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
              + D         K        +  DS     + E+                  I   
Sbjct: 268 EDTLVDRQAMTLRNGKPAYYITMTRSNDSNTVAVLDELNIAIKELNDGALQEHGLAIELS 327

Query: 660 KISRELIRKGIVGV----IISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFAL-- 713
             +   IR  +  V     +  +     +W+ F+  F    I    + ++  + F AL  
Sbjct: 328 YDASVHIRNALDLVKSNLGLGVLLACGILWLFFR-GFGPTLIIAATIPVSLMVAFLALNI 386

Query: 714 FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
           F    N+ ++A +   +G  ++  ++V + +    +L    +       K   +  G   
Sbjct: 387 FDRSLNVVSLAGLAFAVGLVLDAAIIVQENIN---RLRADGMENNKAALKGAVQVSGALF 443

Query: 774 YTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAASSSIFIAA 817
            ++  +    LP+       G +    A+ ++  ++ +  S++ I  
Sbjct: 444 ASTATSVAIFLPILFMAGIEGQLFSDLALTLSIAVIASFVSAVTIIP 490



 Score = 61.2 bits (146), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 76/213 (35%), Gaps = 10/213 (4%)

Query: 617  FLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIIS 676
             LV          AQ  + E V   +   +P            K++  +    I   +  
Sbjct: 805  ILVTPPEDMSLQQAQQLLNEKVLPIMKAQLPSDASLILAGNAEKMASAIDEMQINFALAM 864

Query: 677  AIAMLIYIWIRFKWYFALGAITTLILDI---TKTLGFFALFGIE-FNLTAVAAVLTLIGY 732
             I  L+   +      +   +  + + +      L    LF  +  +L  +   + L+G 
Sbjct: 865  FILFLLMTALFKSAKDSFLVLLVMPMAVAGGVLALALLNLFTFQSLDLLTMIGFIILLGL 924

Query: 733  SVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW--- 789
             VN+ +++ D+ R+        +S    +++++         +++ +   +LP+ +    
Sbjct: 925  VVNNAILLVDQTRE---AERAGLSRTKAVEQAVLIRARPVYLSTLTSLFGMLPLMLMPGV 981

Query: 790  GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLF 822
            G  +    A  +  G+ ++A  ++ +   +L  
Sbjct: 982  GSEIYRGLATVIVGGMAISAIFTLVLMPSLLRL 1014


>gi|319786600|ref|YP_004146075.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
 gi|317465112|gb|ADV26844.1| acriflavin resistance protein [Pseudoxanthomonas suwonensis 11-1]
          Length = 1034

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 66/491 (13%), Positives = 144/491 (29%), Gaps = 26/491 (5%)

Query: 58  LEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
           +     + +   +    +     +        S  Q   +I L F+  R  +  A +V  
Sbjct: 57  MPGASPESMAATVATPLERALGSIPGITRITSSSNQGNTRIDLQFSLDRDIDEAAREVQA 116

Query: 118 FLQGVNSKLNVDPKK-NLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGI 176
            L    ++L                +  I+    + D +    +            +I  
Sbjct: 117 ALNAARAQLPAGMPGMPYFRKINPSQAPIMTIALSSDTLTPPQVF--DLASTVLAQKIAQ 174

Query: 177 SESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDS 236
                +       L  +    +P  L Q      +++      N  +             
Sbjct: 175 VPGVGEVSVGGGSLPAVRVSLNPGALNQYGIALEEVASAIRNANALRPLG---------- 224

Query: 237 DGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAV 296
                                 A    +T     D+       R         +G+    
Sbjct: 225 ----------TVARDDRQWQVEAGLQLRTADEYRDLVVAWRDGRAVHLRDVAQVGEGTEN 274

Query: 297 VLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADL 356
                          + + +   +   T++        LRA         V         
Sbjct: 275 RYASGFHNGRAAVLMMVNRQPNANIIRTVDAIHEQMDTLRALLPAGVDMKVVMDRSPVIR 334

Query: 357 GSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPS 416
            +    + T  +  GLV++V+   +   +  LV   +I +++   LA++ L G +L   S
Sbjct: 335 ATLHEAEATLVLAVGLVVLVVLAFLGSWRAALVPSLAIPVSLFGALAIIWLAGFSLNTLS 394

Query: 417 IAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVV 476
           +  +++   L VD  I+V E I        S   +   G     +T+   NI   +  V 
Sbjct: 395 LMALIVAAVLVVDDAIVVLENISRHLAAGLSPVAAAMRGAGEVGTTLLSMNIALAVVFVS 454

Query: 477 LFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFL 533
           + F   F     R F++T+  ++++S+  ++S   A+   ++R      +         L
Sbjct: 455 ILFLDDFVEKLFREFSLTLVAAMVVSVLVSLSFTPALCSRMLRSAGPDRVIPPWERLGEL 514

Query: 534 IPDCIAIQFMR 544
           +   +   ++R
Sbjct: 515 LFGGLRRLYLR 525



 Score = 60.9 bits (145), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 92/241 (38%), Gaps = 7/241 (2%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S   +   G    +    ++    R+ +     V        ++  + +I+  + +Q   
Sbjct: 788  SAFATWGYGMAPDRIQHRQQFVSTRVSFALAPGVTLDEATAAIQDAMAKIMLPTQVQAKL 847

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITK-TLGFFALF 714
                    EL  + +  ++ + +A+ + + + ++      AI +++       L    +F
Sbjct: 848  GDEAGSLEELRNRQVWLILGAVLAVYLVLGVLYESLVQPLAILSILPSAGIGALVALLVF 907

Query: 715  GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
              E NL ++  +  L+G  + + +++ D     +            I ++        + 
Sbjct: 908  DGELNLISLLGLFLLVGVVMKNTILMVDFA---LAAQREGQPAHAAILEAARLRFRPILM 964

Query: 775  TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            TS+AA +  LP+ +  G    +     I +  G++V+   +++    + L +   RA+ A
Sbjct: 965  TSVAALLGTLPLMLATGEGWEMRRPLGIAIVGGLLVSQVLTLYTTPAVFLALDRLRARVA 1024

Query: 832  R 832
            R
Sbjct: 1025 R 1025



 Score = 59.3 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/134 (14%), Positives = 47/134 (35%), Gaps = 6/134 (4%)

Query: 689 KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNM 748
            W  AL     + + +   L    L G   N  ++ A++      V+D +VV + +    
Sbjct: 361 SWRAALVPSLAIPVSLFGALAIIWLAGFSLNTLSLMALIVAAVLVVDDAIVVLENI---S 417

Query: 749 KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG---SVIGSFAIPMAFGI 805
           +     +S      +   E     +  ++A  +  + +         +   F++ +   +
Sbjct: 418 RHLAAGLSPVAAAMRGAGEVGTTLLSMNIALAVVFVSILFLDDFVEKLFREFSLTLVAAM 477

Query: 806 VVAASSSIFIAAPI 819
           VV+   S+     +
Sbjct: 478 VVSVLVSLSFTPAL 491


>gi|298682178|gb|ADI95246.1| CzcA [Pseudomonas putida]
          Length = 1092

 Score =  120 bits (301), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 56/599 (9%), Positives = 153/599 (25%), Gaps = 60/599 (10%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF- 65
            +++   +  +  +    +   +  +D  P                 +++ ++++     
Sbjct: 57  RLVVMLAVVLMAAVGI--HSYQKLPIDAVPDI---------------TNVQVQINTAAPG 99

Query: 66  -----VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
                    +    +   + L          R   +++T+ F D          V   LQ
Sbjct: 100 YSPLETEQRITFAIETAMAGLPGLKQTRSLSRSGLSQVTVIFDDGTDIFFARQLVNERLQ 159

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNN------IDQVISHAIEQSMEIIRQRIDQI 174
               +L    +  +   +T      + +          D       +  +        Q+
Sbjct: 160 VAREQLPEGIEAGMGPISTGLGEIFLWTVEAQEGALKEDGTPYTPTDLRVIQDWIIKPQL 219

Query: 175 GISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLR 234
                  +         Q     +P RL     T   +                      
Sbjct: 220 RNVPGVAEVNSIGGHAKQYLIAPEPKRLAAYKLTLNDLIAAL------------------ 261

Query: 235 DSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPL 294
             + N   +               A     + + + +I    +            +G   
Sbjct: 262 --ERNNANIGAGYIERNGEQLLIRAPGQVASAEDIANIVISSVDGTPIRVSHVAQVGLGE 319

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
            +           +           +     +        +        + +        
Sbjct: 320 ELRSGAATENGREVVLGTVFMLIGENSRTVSQAVAAKLVEINRNLPKGVVAVTVYDRTNL 379

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              + +  K      A LV+ VLF+ +   +  L+    I L+++ T   +     +  L
Sbjct: 380 VEKAIATVKKNLIEGAILVIAVLFLFLGNIRAALITAMVIPLSMLFTFTGMFSNKVSANL 439

Query: 415 PSIAGI-----VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGF---SRAYSTIFDS 466
            S+  +     V G  + V++ I      ++ + +  +        F     A   +   
Sbjct: 440 MSLGALDFGIIVDGAVVIVENAIRRLAHAQQRHGRMLTRSERFHEVFAAAREARRPLIYG 499

Query: 467 NITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
            +  ++  + +F      G      A T+ +++L +M  +++ V A +   +  K  +  
Sbjct: 500 QLIIMVVYLPIFALTGVEGKMFHPMAFTVVMALLGAMILSVTFVPAAIALFVTGKVKEEE 559

Query: 524 DINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLG 582
            +   +        +A    R +      + L  +  +              +G   L 
Sbjct: 560 GLVMRTARQRYAPVLAWVLGRRKLACAAAAALVLLSGVMASRMGSEFIPSLSEGDFALQ 618



 Score = 38.1 bits (86), Expect = 7.0,   Method: Composition-based stats.
 Identities = 24/165 (14%), Positives = 57/165 (34%), Gaps = 13/165 (7%)

Query: 673 VIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGY 732
           +  + + + +          AL  IT +++ ++    F  +F  + +   ++      G 
Sbjct: 392 IEGAILVIAVLFLFLGNIRAAL--ITAMVIPLSMLFTFTGMFSNKVSANLMSLGALDFGI 449

Query: 733 SVNDKVVVYDR-MRKNMKLYTTSISFRDL------IDKSINETLGRSVYTSMAAFISVLP 785
            V+  VV+ +  +R+                    +  +  E     +Y  +   +  LP
Sbjct: 450 IVDGAVVIVENAIRRLAHAQQRHGRMLTRSERFHEVFAAAREARRPLIYGQLIIMVVYLP 509

Query: 786 MAVWGGS---VIGSFAIPMAFGIVVAASSSI-FIAAPILLFIYDW 826
           +    G    +    A  +   ++ A   S+ F+ A I LF+   
Sbjct: 510 IFALTGVEGKMFHPMAFTVVMALLGAMILSVTFVPAAIALFVTGK 554


>gi|126659296|ref|ZP_01730432.1| AcrB family membrane transport protein [Cyanothece sp. CCY0110]
 gi|126619378|gb|EAZ90111.1| AcrB family membrane transport protein [Cyanothece sp. CCY0110]
          Length = 1054

 Score =  120 bits (300), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 69/503 (13%), Positives = 148/503 (29%), Gaps = 30/503 (5%)

Query: 59  EVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
           E      V  ++    ++  + L        S +Q  + +T+ FA     +    +V   
Sbjct: 54  EGQTPTEVETYISKPIEQRLTVLDGVRFVRSSSQQDMSLVTIQFAWGGDIDTAVQEVQSV 113

Query: 119 LQGVNSKLNVD---PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIG 175
           ++     L +D    +   ++        ++      +     +++         +D++ 
Sbjct: 114 MKAAEGDLPLDGINTRSYWVLPIDPLNRPVLTLALKGEGW--DSVQLREFADNTLVDRLT 171

Query: 176 ISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRD 235
                           QL    D  +L     +   +                       
Sbjct: 172 QVMDVQAVSIFGGYRRQLQVIVDRQKLAAYGLSILDVRDAI------------------- 212

Query: 236 SDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLA 295
            D N       V   G       A+      + V D    EMG R  +      +     
Sbjct: 213 -DKNNVSEGAGVLTRGDTEILVRADDRALNAQMVRDYPLYEMGGRIVYIRDVAEVKDTYE 271

Query: 296 VVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGAD 355
               G               K   S    IE        + A    I+       N    
Sbjct: 272 EKRSGYRYNGQSALAVNVIQKPDSSSPKVIERVRKELEKIEAQYPGIEF-QEAYDNSFLV 330

Query: 356 LGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLP 415
                   G   I   L  IV+ + +   +   +   SI +++ L++     +  +L   
Sbjct: 331 ELIKDSTTGELLISVLLAGIVILVFLEDFRATAIVMISIPMSLALSMLPFIPISMSLNSS 390

Query: 416 SIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           ++ G+++ IG  VD +I+V + I    +  +S   +   G    +     ++ T + A +
Sbjct: 391 TLVGMMMAIGKLVDDSIIVIDSIDRHLKLGKSPRKAAIEGTGEVFLASAAASCTMIAALL 450

Query: 476 VLFFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRY-KKMKSIDINPLSRF 531
                G   G    G    M  + + S+  +I+++  +  F ++   K K+     L   
Sbjct: 451 PTVLAGGLTGLMFVGLVYPMVFAFISSLLVSITLIPLLAAFFLKPLGKTKNQKRTWLQWL 510

Query: 532 FLIPDCIAIQFMRARFWGVGISI 554
                   I   ++  W + +S+
Sbjct: 511 VSPFHYGFIALEKSYGWLLNLSL 533



 Score = 57.8 bits (137), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/241 (14%), Positives = 83/241 (34%), Gaps = 15/241 (6%)

Query: 594 VRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQN 653
           +R   E     +     +       + +        +  +V+E V+K++ +I        
Sbjct: 260 IRDVAEVKDTYEEKRSGYRYNGQSALAVNVIQKPDSSSPKVIERVRKELEKIEAQYPGIE 319

Query: 654 TEIVGPK------ISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKT 707
            +           I      + ++ V+++ I +L+++     +      + ++ + +  +
Sbjct: 320 FQEAYDNSFLVELIKDSTTGELLISVLLAGIVILVFLE---DFRATAIVMISIPMSLALS 376

Query: 708 LGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINE 767
           +  F    +  N + +  ++  IG  V+D ++V D +    +      S R    +   E
Sbjct: 377 MLPFIPISMSLNSSTLVGMMMAIGKLVDDSIIVIDSI---DRHLKLGKSPRKAAIEGTGE 433

Query: 768 TLGRSVYTSMAAFISVLPMAVWGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIY 824
               S   S     ++LP  + GG           PM F  + +   SI +   +  F  
Sbjct: 434 VFLASAAASCTMIAALLPTVLAGGLTGLMFVGLVYPMVFAFISSLLVSITLIPLLAAFFL 493

Query: 825 D 825
            
Sbjct: 494 K 494



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/440 (11%), Positives = 133/440 (30%), Gaps = 19/440 (4%)

Query: 408  LGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSN 467
               T      +   +G G+   S I+  + + E  R    V  +++   +     I    
Sbjct: 611  FEFTRNSTYFSAYSMG-GVNAASMIVTLKPLGERQRDIWQVMDAIETEANATIPGIRRIA 669

Query: 468  --------ITALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
                    +    A + +  +G       ++   +  +      I +       + + + 
Sbjct: 670  MKEMGVDVMATSAAPIQIAVYGEDLNILHSLAQEVLNIAENNPDIVMTHT-SSSLNQPEY 728

Query: 520  MKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGI 579
               ID        L    +  Q   A   G   S                N         
Sbjct: 729  QLKIDRRRAQELGLSLAMVTEQAKYALNGGYTRSFYNRPNLRQNTILVRYNQQDRGNFQD 788

Query: 580  QLG--VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEM 637
                 +       + +          G    +  +G +   V   Y+  +  +    + +
Sbjct: 789  LASTYITTPNGEQIPLSMVARLEPSQGPTLVERVNGRRVVYVNGFYRKRNPASMNLSMAV 848

Query: 638  VKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGA 696
              +   EI          +           + + G+++S + + + + I+F  +   L  
Sbjct: 849  AMQAAEEITFPPGYGLDSMGDMTDMMIEFDRLLKGLVVSLVLIYLILVIQFGSFIQPLVM 908

Query: 697  ITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSIS 756
            + ++ L++    G   L     +  ++  ++ L G +V+  +++ + +   +      + 
Sbjct: 909  MLSIPLELVGVFGALLLAKQTLSTVSILGIIILSGIAVSSAILLLELI---LTKRQEGVP 965

Query: 757  FRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSI 813
                I +S    L     T++   I V+ +A +   G       A  +  G+ V+   ++
Sbjct: 966  RMQAIRESGPVRLKAIFMTTLTTMIVVVRLAFYPETGMDAYSPIATVILGGLTVSTLLTL 1025

Query: 814  FIAAPILLFIYDWRAKNARI 833
             +   +  F+ D+     ++
Sbjct: 1026 IVIPVVYTFVDDFIMGVKKL 1045


>gi|237728475|ref|ZP_04558956.1| SilA [Citrobacter sp. 30_2]
 gi|226909953|gb|EEH95871.1| SilA [Citrobacter sp. 30_2]
          Length = 1048

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 71/658 (10%), Positives = 156/658 (23%), Gaps = 45/658 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVMMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDLYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       +    T                     E           ++    +  
Sbjct: 117 VQGKLPAGVSSEIGPDATGVGWIFEY-ALVDRSGKHDLSELRSLQDWFLKFELKTIPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q   + +P +L Q   +  ++       N    G    +           
Sbjct: 176 EVASVGGVVKQYQIQVNPEKLSQYGVSLPEVKQALESSNQEAGGSSVEMAEAEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +          +      +     +     
Sbjct: 236 YL-------------------QTIDDFNNIVLKTGENGVPVYLRDVARVQTGPEMRRGIA 276

Query: 302 VLTAPV-INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L     +   +   ++  +    I         L+A        +           +  
Sbjct: 277 ELNGQGEVAGGVVILRSGKNARDVITAVRDKLDTLKASLPEGVEIVTTYDRSQLIDRAID 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V IV  + + + +  LVA  S+ L + +   ++   G    + S+ GI
Sbjct: 337 NLSYKLLEEFIVVAIVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREE-----------NRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            + +G  VD+ I++ E   +               N + +  +          +F S + 
Sbjct: 397 AIAVGAMVDAAIVMIENAHKRLEEWDHQHPGEQIDNATRWKVITDASVEVGPALFISLLI 456

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             ++ + +F      G      A T   S+  +   AI ++  +M F IR K        
Sbjct: 457 ITLSFIPIFTLEGQEGRLFGPLAFTKTYSMAGAAALAIIVIPILMGFWIRGKIPAETSNP 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      + ++ +      + ++ L     I  L   G  +      G  L + + 
Sbjct: 517 LNRMLIKAYHPLLLRVLHWPKTTLLVAALSIFTVIWPLSQVGGEFLPKINEGDLLYMPST 576

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITE 644
            P       + L       I                    DS     V   ++ K  +
Sbjct: 577 LPGVSPAEAAALLQTTDKLIKTVPEVASVFGKTGKAETATDSAPLEMVETTIQLKPED 634



 Score = 54.3 bits (128), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 91/287 (31%), Gaps = 14/287 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I + +             + +     + + L  V           +  +N     
Sbjct: 763  VARYPINIRYPQDYRNSPQALKQMPILTPMKQQITLGDVADIKVVSGPTMLKTENARPAS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               +  + +   SV       + +K         +      +    +++L  K +V + +
Sbjct: 823  WIYIDARGRDMVSVVNDIKTAISQKVKLRPGTSVSFSGQFELLEHANKKL--KLMVPMTV 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  + +L   +   + F    G   ++      + L G +  
Sbjct: 881  MIIFILLYLAFR-RADEALLILMSLPFALVGGIWFLYWQGFHMSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYT--------TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++ +         T     + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAHPELSRKETFTPEGLDEALYHGAVLRVRPKAMTVAVIIAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 G  V+   A PM  G++ A   S+FI       I+  R K +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLIWLRRHKKS 1046


>gi|53803682|ref|YP_114682.1| CzcA family heavy metal efflux protein [Methylococcus capsulatus
           str. Bath]
 gi|53757443|gb|AAU91734.1| heavy metal efflux pump, CzcA family [Methylococcus capsulatus str.
           Bath]
          Length = 1066

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 60/554 (10%), Positives = 146/554 (26%), Gaps = 40/554 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
            N +LV+L         + A+     ++ LD  P       I          +       
Sbjct: 11  RNVFLVLLAMAAVIAAGIYAIV----RTPLDALPDLSDAQVI---------VYTEFPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          + +  +         + + + F D         +V  +L   
Sbjct: 58  PQVVEDQVTYPLTTSMLNVPRSKVVRGFSFFGASYVYVIFDDGTDIYWARSRVLEYLNAA 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
             KL  +    +    T            +        E           Q+  ++   +
Sbjct: 118 AGKLPKNVTPRIGPDATGVGWVYQY---ALTGAGHTLAELRTLQDWFLRYQLSKAQGVAE 174

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                  + Q     DP +L+       K+       N    G +  +         +  
Sbjct: 175 VASIGGFVQQYQVTVDPHKLQAYGVPLKKIIEVIRASNTDVGGRVVELAETEYMVRGRGY 234

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    ++                      +     G              P        +
Sbjct: 235 LHGIADLE-------------------QLVVKAAGGIPVLIRDVARVELVPDERRGIAEL 275

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +    I         +  G       +         L + +  
Sbjct: 276 NGEGEVVSGIALARYGQNALDVISGVKARLLEIAPGLPEGVDIVPVYDRSELILRAIATL 335

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           + T    + +V  V  + + + +  LVA   + + +++   ++  +     L S+ GI +
Sbjct: 336 RETLLEESAVVAAVCVLFLFHLRSALVAILMLPVGILIAFMVMRAMDLNSNLMSLGGIAI 395

Query: 423 GIGLAVDSNILVNERIREENRKNQSVFCS--LDMGFSRAYSTIFDSNITALIATVVLF-- 478
            IG  VD+ I++ E   +   +N        +          +F S +   ++ + +F  
Sbjct: 396 AIGAMVDAAIVMIENAHKHLERNPDQPRIELIRAACREVGPALFFSLLIITVSFLPVFAL 455

Query: 479 -FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDC 537
               G      A T   ++  +   +++ V  MM+  +R + +             +   
Sbjct: 456 EAQEGRLFHPLAYTKTFAMAGAALLSVTAVPVMMLLFVRGRILPEGRNPVNRLLIALYRP 515

Query: 538 IAIQFMRARFWGVG 551
           +    +R +   + 
Sbjct: 516 VIRSVLRHKALTLT 529



 Score = 55.1 bits (130), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/148 (18%), Positives = 55/148 (37%), Gaps = 5/148 (3%)

Query: 684 IWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDR 743
           +   F    AL AI  L + I           +  NL ++  +   IG  V+  +V+ + 
Sbjct: 351 VLFLFHLRSALVAILMLPVGILIAFMVMRAMDLNSNLMSLGGIAIAIGAMVDAAIVMIEN 410

Query: 744 MRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAA---FISVLPMAVWGGSVIGSFAIP 800
             K+++         +LI  +  E      ++ +     F+ V  +    G +    A  
Sbjct: 411 AHKHLERNP-DQPRIELIRAACREVGPALFFSLLIITVSFLPVFALEAQEGRLFHPLAYT 469

Query: 801 MAFGIVVAASSSIFIAAPILLFIYDWRA 828
             F +  AA  S+  A P+++ ++    
Sbjct: 470 KTFAMAGAALLSV-TAVPVMMLLFVRGR 496


>gi|134287672|ref|YP_001109838.1| CzcA family heavy metal efflux protein [Burkholderia vietnamiensis
           G4]
 gi|134132322|gb|ABO60057.1| heavy metal efflux pump, CzcA family [Burkholderia vietnamiensis
           G4]
          Length = 1068

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 66/562 (11%), Positives = 152/562 (27%), Gaps = 48/562 (8%)

Query: 4   NPWLVILY-SMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
           N +LV+L   ++   GL         ++ LD  P       I                  
Sbjct: 12  NRFLVLLATVLMTGWGLYSVA-----ETPLDALPDLSDTQVI---------IKASYPGKA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              +   +          +                + + F D   +     +V  +L  V
Sbjct: 58  PQVIEDQVTYPLTTTLLGVPGAKTIRAYSSFGDAFVYVLFDDKTDQYWARSRVLEYLNQV 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
            S+L      +L    T                     +           ++       +
Sbjct: 118 QSRLPQGATVSLGPDATGVGWVYEY-ALVDKTGQHDLGQLRALNDWFLKFELKAVPDVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 ++ Q     DP +LR    T A ++      N +  G +  +        +   
Sbjct: 177 VASIGGMVRQYQVVLDPDKLRAYGITQAAVTDALGKANQASGGSVVELAESEYMVRSSGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
           +    +                     V +  ++ G              P        +
Sbjct: 237 LRSLDDFRN------------------VVLRTNDAGTPVLLGDVARIQIGPEMRRGIAEL 278

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   +   ++  +   TI+      A L+    P    +           +    
Sbjct: 279 NGQGEVAGGVIVMRSGKNALKTIDAVKAKLADLKRSLPPGVEVVTTYDRSQLIERAVDNL 338

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
           K        +V +V  + + + +   VA  S+ L V+    ++   G    L S+ GI +
Sbjct: 339 KDKLIEEFIIVGLVCAVFLFHLRSAFVAILSLPLGVLAAFIVMRYQGVNANLMSLGGIAI 398

Query: 423 GIGLAVDSNILVNERIREENRKNQS-----------VFCSLDMGFSRAYSTIFDSNITAL 471
            IG  +D+ I++ E   +     +             +  +    +     +F S +   
Sbjct: 399 AIGAMIDAAIVMIENAHKHLEAFEHAFPETRMTAAQRWELIATSATEVGPALFFSLLIIT 458

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
           ++ + +F      G      A T   +I  +   ++++V  +M ++IR +          
Sbjct: 459 LSFIPVFSLEGQEGKLFSPLAFTKTYTIAAAAGLSVTLVPVLMGYLIRGRIPHENANPIN 518

Query: 529 SRFFLIPDCIAIQFMRARFWGV 550
                +   +    +R  +  +
Sbjct: 519 RVLIWLYRPLLEATLRWPWAAI 540



 Score = 60.5 bits (144), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 80/263 (30%), Gaps = 16/263 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             +       + L  V     +     I  +N        V ++     S  +     + +
Sbjct: 787  PIVTDRGAQIQLGDVAHITIADGPPMIRSENARLSGYVYVDIRNTDLQSAVKAMQQVVAR 846

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF-ALGAIT 698
            +                   + +  L       + ++ + + + +++ F     AL  ++
Sbjct: 847  QVQLPPGYSIAWSGQFEYLERAAARLRT----VIPVTLVVIFVLLFLTFNSAADALLLMS 902

Query: 699  TLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVV-------YDRMRKNMKLY 751
            T+   +        + G   ++      + L G +    VV+        +R R      
Sbjct: 903  TVPFALVGGFWLIWILGHAVSVATSVGFIALAGVAAEFGVVMLLYLKGALNR-RLEDGEL 961

Query: 752  TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVA 808
             T     D I K     +     T       ++P+ V    G  V+   A PM  G+V A
Sbjct: 962  LTEALLFDAIRKGAVLRVRPKAMTVAVVLAGLIPIMVGHGAGSEVMQRIAAPMVGGMVTA 1021

Query: 809  ASSSIFIAAPILLFIYDWRAKNA 831
               S+F+       +   RA+ A
Sbjct: 1022 PLLSMFVIPAAWFLLQRRRARQA 1044



 Score = 52.4 bits (123), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/251 (15%), Positives = 85/251 (33%), Gaps = 12/251 (4%)

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTI 651
            V R  +       I+  N  GE    V +     +++     ++     +   +P    
Sbjct: 261 DVARIQIGPEMRRGIAELNGQGEVAGGVIVMRSGKNALKTIDAVKAKLADLKRSLPPGVE 320

Query: 652 QNTEIVGPKISRELIRKGIVGVIISAIAMLIYIW-IRFKWYFALGAITTLILDITKTLGF 710
             T     ++    +      +I   I + +      F    A  AI +L L +      
Sbjct: 321 VVTTYDRSQLIERAVDNLKDKLIEEFIIVGLVCAVFLFHLRSAFVAILSLPLGVLAAFIV 380

Query: 711 FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFR--------DLID 762
               G+  NL ++  +   IG  ++  +V+ +   K+++ +  +            +LI 
Sbjct: 381 MRYQGVNANLMSLGGIAIAIGAMIDAAIVMIENAHKHLEAFEHAFPETRMTAAQRWELIA 440

Query: 763 KSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPI 819
            S  E      ++ +   +S +P+    G     F   A    + I  AA  S+ +   +
Sbjct: 441 TSATEVGPALFFSLLIITLSFIPVFSLEGQEGKLFSPLAFTKTYTIAAAAGLSVTLVPVL 500

Query: 820 LLFIYDWRAKN 830
           + ++   R  +
Sbjct: 501 MGYLIRGRIPH 511


>gi|228930443|ref|ZP_04093443.1| Swarming motility protein swrC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228829162|gb|EEM74799.1| Swarming motility protein swrC [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 1038

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 196/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKDALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       ++     K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASSQGSQTAGAGAQMPQMNPAAMNGIPTVTLSEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEERLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.8 bits (215), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 SEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEERLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|17229148|ref|NP_485696.1| hypothetical protein alr1656 [Nostoc sp. PCC 7120]
 gi|17135476|dbj|BAB78022.1| alr1656 [Nostoc sp. PCC 7120]
          Length = 1034

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 71/643 (11%), Positives = 189/643 (29%), Gaps = 44/643 (6%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           +N   L++    I   GL     +          P   P+  +                 
Sbjct: 7   QNVRLLILTVLAIAVWGL-----SSFFSLPRIEDPEITPRFAV---------ITTSFPGA 52

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFAD-SRFKENIADKVTLFLQ 120
             + V   +    ++    +++      + R   + IT+   +     + +  +V   + 
Sbjct: 53  APERVETLITDKLEQSLFEVEEINNIESTSRLGFSSITVELNETINDVDPVWSRVRAKIN 112

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
                L           +  K  +++++     +   +    S    ++  DQ+ +   T
Sbjct: 113 DTIPLLPSGAATPKFEQSKPKANALIVALTWDLESAPNYAILSRWA-QELDDQLRLIGGT 171

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
            +         ++  E +P +L  L  T   +S   +  +                    
Sbjct: 172 EKVEQFGTPQEEIAIEVNPKQLTNLGLTIQSVSQQILQSDAKVAAGQLRSNQSNLLLEIN 231

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDG 300
             ++    ++                   + I                     L    + 
Sbjct: 232 GELDSLDRLN------------------RLSIQLGNSSNVVRLGDIAQIKKGILDPPREL 273

Query: 301 RVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            ++            +++   +     A       +          +            +
Sbjct: 274 ALVKGRRAIAISAFVESEQRLDAWAAIANTTLNKFQQQLPNGVGLQILFDQSHYVEQRLN 333

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                  I   ++++ + + ++  K  L+   ++ L+V +    + LLG  L   S+ G+
Sbjct: 334 EVLMNL-ITGAVLVVGITLFMMGWKSSLIVGSALPLSVFMVFGSMKLLGVPLHQISVTGL 392

Query: 421 VLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFF 480
           ++ +GL +D+ I+V + ++   R+  +   ++       +S +  S  T+++A V +   
Sbjct: 393 IIALGLLIDNAIIVVDEVQIYLREGLTPKKAVATTVREIFSPLLASTFTSVLAFVPIATA 452

Query: 481 G---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK------MKSIDINPLSRF 531
               G       +T+ L+++ S+F A++++ A+   +  +K          +  +     
Sbjct: 453 PGGTGEFTGTIGVTVILALVSSLFLALTVIPALAGRLHYWKPTPASGSWWQVGFSHHHLG 512

Query: 532 FLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDL 591
            L    +   F R         IL     I L       +    +G   +         L
Sbjct: 513 QLYSWSLDRTFSRPLLSIALSLILPLWGFISLANLEQQFFPPTDRGQFYVNFELPIQASL 572

Query: 592 SVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRV 634
              +S +   +   +        + F+ +       +V Q R 
Sbjct: 573 QQTQSQVTQARELMLRHPEIADVQWFIGKSAPPFYYNVIQNRE 615



 Score = 82.8 bits (202), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 26/195 (13%), Positives = 76/195 (38%), Gaps = 4/195 (2%)

Query: 632 TRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWY 691
             +      K  + +P                + + + ++ +I  A+ ++        W 
Sbjct: 298 AAIANTTLNKFQQQLPNGVGLQILFDQSHYVEQRLNEVLMNLITGAVLVVGITLFMMGWK 357

Query: 692 FALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLY 751
            +L   + L L +    G   L G+  +  +V  ++  +G  +++ ++V D   +     
Sbjct: 358 SSLIVGSALPLSVFMVFGSMKLLGVPLHQISVTGLIIALGLLIDNAIIVVD---EVQIYL 414

Query: 752 TTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASS 811
              ++ +  +  ++ E     + ++  + ++ +P+A   G   G F   +   +++A  S
Sbjct: 415 REGLTPKKAVATTVREIFSPLLASTFTSVLAFVPIATAPGGT-GEFTGTIGVTVILALVS 473

Query: 812 SIFIAAPILLFIYDW 826
           S+F+A  ++  +   
Sbjct: 474 SLFLALTVIPALAGR 488



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/205 (17%), Positives = 72/205 (35%), Gaps = 7/205 (3%)

Query: 628  SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIR 687
                   L      +               G  +S  +   G++ +++ A  +L +   R
Sbjct: 831  QTDFQDRLTASNFTLPSGYSWDFGGEEGERGDALSNLISTVGVLMIMMIASLVLTFSSFR 890

Query: 688  FKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKN 747
                 ++  +   IL +   LG  ALF   F  TA+  ++ L+G +VND +VV   +   
Sbjct: 891  ---LASIILVVA-ILSMGLGLGSLALFNYPFGFTAILGMIGLMGVAVNDSIVVLSSLN-- 944

Query: 748  MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
                      R    K +  +    + T++   I   P+ +         AI +  G+  
Sbjct: 945  -HDPKARQGDRHAARKVVIRSTRHVIATTLTTIIGFTPLLLDASGFWPPLAITIVGGLGG 1003

Query: 808  AASSSIFIAAPILLFIYDWRAKNAR 832
            A   +++    + L +     K +R
Sbjct: 1004 ATLIALYFVPSVYLLLQRSLTKESR 1028


>gi|298384611|ref|ZP_06994171.1| cation efflux system (AcrB/AcrD/AcrF family) [Bacteroides sp.
           1_1_14]
 gi|298262890|gb|EFI05754.1| cation efflux system (AcrB/AcrD/AcrF family) [Bacteroides sp.
           1_1_14]
          Length = 1039

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 76/637 (11%), Positives = 189/637 (29%), Gaps = 19/637 (2%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           +   +    LL+       Q  +D  P         L ++L+ G     E   ++    F
Sbjct: 13  VTICMVVFALLLLGKVSYDQLSVDLLPDLNNP---RLFIELKAG-----ERPPEEIEKQF 64

Query: 70  LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNVD 129
           ++              +    ++    +IT+ +  ++  +     +   +         D
Sbjct: 65  VKNMESMAIRQSDVTQVS-SVIKAGTARITVEYTWTKDMDEAFLDLQKAMNPFAQN--KD 121

Query: 130 PKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRI 189
             +  +         +VL   +   +     E          +++   E   +   S   
Sbjct: 122 ITELKITQHDANLSPVVLVGMSHQSIT-DMAELRKIAESYIRNELIRLEGVAEVTLSGEE 180

Query: 190 LIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEI 249
           +  L  + DP +L         ++      N S  G       L+    +  L   + + 
Sbjct: 181 VSTLTIQTDPYKLDAFQLKIEDIASRIESNNQSISGGRVSELGLQYLVKSSSLFASEDDF 240

Query: 250 SGIHLNGATANFDPKTHKPVVD-ISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
             + +         +         +         F      +    A   +   +     
Sbjct: 241 ENLIVGYKAIQQQEEASGNNATGTATANSNKAPVFLKEVATVQFLNARPENIVRINGKRS 300

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
                  + + +    ++      A++          ++          +    K +  +
Sbjct: 301 IGLSIYKEMRFNTVKVVDEVTRQLAVIENALPGYHFQVIS-NQGTFIKSAIGEVKSSAVL 359

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
              L ++VLF+ +      L+   +I ++++ T  L+   G +L + ++ G+ LG G+ V
Sbjct: 360 GVILAIVVLFVFLRRMGTTLIVSLAIPISIVATFNLMFFNGLSLNIMTLGGLALGAGMLV 419

Query: 429 DSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA---V 485
           D+ I+V E I     K  S+  +   G +   + +  S +T ++  + + +  G +    
Sbjct: 420 DNAIVVIESIFRNQEKGLSIKEAAINGTAEVANAVIASTLTTIVVFLPIVYLHGASGELF 479

Query: 486 RGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRA 545
           +  A T+  S++ S+F AI ++  +  +I    K   ++     R       +     R 
Sbjct: 480 KDQAWTVTFSLVSSLFVAILVIPML--YIQLSGKKIKLEEVKSIRITGYSRVLRRLIQRR 537

Query: 546 RFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGD 605
                   +L  +  +   F                 V       +    + + +L+   
Sbjct: 538 WLVIGMAVLLLIVTGLLTPFIGTEFMPRAESKTFTAVVKMPEGTQMERTSAAVGNLEELL 597

Query: 606 ISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            +    D        +    G   A          K+
Sbjct: 598 YTIVGGDSLCTVYSHIGEGSGSENAIFEGENTAMMKV 634



 Score = 94.4 bits (232), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 105/247 (42%), Gaps = 7/247 (2%)

Query: 590  DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
                V   + ++  G    +     ++ + ++      S +  +V   V++ +  I   +
Sbjct: 791  TQEFVLQEIATITHGQAPKEILRRNQSRIGKVMANMDASKSLDKVAAEVRETVKGIELPA 850

Query: 650  TIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTLILDITKTL 708
                T     +  +E +   +  +++S + + + +  +F+        + T+ L +   +
Sbjct: 851  NYSITVTGEEEKRQESMNSLLFALMLSVVLVYMVMASQFESLLHPFTILLTIPLAVVGAI 910

Query: 709  GFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINET 768
              F + G   N+  V  ++ L G +VN+ +++ DR+    +L    +   D I ++  + 
Sbjct: 911  LLFFITGTTINMMGVIGIVMLGGIAVNNSIILVDRIN---QLSQAGMELTDAIVEAGQQR 967

Query: 769  LGRSVYTSMAAFISVLPM-AVWG-GSVIGS-FAIPMAFGIVVAASSSIFIAAPILLFIYD 825
            +   + T++   +++LPM   +G G+ + S  AI +  G++ +   S+ +   +   + +
Sbjct: 968  IRPIIMTTLTTILAMLPMTFSFGEGASLRSPMAIAVIGGLITSTLMSLMVIPCVYYVLEN 1027

Query: 826  WRAKNAR 832
             + +  R
Sbjct: 1028 IKRRINR 1034



 Score = 71.6 bits (173), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 68/205 (33%), Gaps = 11/205 (5%)

Query: 633 RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYF 692
             +      I   +P    Q     G  I   +       V+   +A+++      +   
Sbjct: 318 DEVTRQLAVIENALPGYHFQVISNQGTFIKSAIGEVKSSAVLGVILAIVVLFVFLRRMGT 377

Query: 693 ALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYT 752
            L     + + I  T       G+  N+  +  +    G  V++ +VV + +    +   
Sbjct: 378 TLIVSLAIPISIVATFNLMFFNGLSLNIMTLGGLALGAGMLVDNAIVVIESI---FRNQE 434

Query: 753 TSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAA 809
             +S ++       E     + +++   +  LP+       G +    A      +  + 
Sbjct: 435 KGLSIKEAAINGTAEVANAVIASTLTTIVVFLPIVYLHGASGELFKDQAWT----VTFSL 490

Query: 810 SSSIFIAAPILLFIY-DWRAKNARI 833
            SS+F+A  ++  +Y     K  ++
Sbjct: 491 VSSLFVAILVIPMLYIQLSGKKIKL 515


>gi|295136104|ref|YP_003586780.1| AcrB/AcrD/AcrF family heavy metal cation efflux protein
           [Zunongwangia profunda SM-A87]
 gi|294984119|gb|ADF54584.1| AcrB/AcrD/AcrF family heavy metal cation efflux protein
           [Zunongwangia profunda SM-A87]
          Length = 1466

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 79/680 (11%), Positives = 177/680 (26%), Gaps = 58/680 (8%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE---DDFV 66
           L   +  + L+      L Q  +D  P       +            V+ +        V
Sbjct: 14  LVIGLFTLALIGWGSYSLTQLPIDAVPDITDNQVM------------VITISPTLAAQEV 61

Query: 67  NGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKL 126
              +    ++    +          R   + +T+ F +S        +V   L      +
Sbjct: 62  EQLVTFPVEQTMVSIPGIKEMRSFSRFGLSIVTIVFEESVDLYWARQQVQERLTQAAKDI 121

Query: 127 NVDPKKN---LLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQR 183
                K     + T   +    V+      +    A E           Q+  +    + 
Sbjct: 122 PEGIGKPEMGPVTTGLGEIYQYVIHTEKGYEDKYDATELRTIQDWIIKRQLLGTPGVAEV 181

Query: 184 LGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLV 243
            G   ++ Q     DP +L+ +  T   +       N +  G             ++ LV
Sbjct: 182 SGFGGLVKQYEIAIDPDKLQSMNVTIEDIFTALEKNNQNTGGAYIDKGPNAYFIRSEGLV 241

Query: 244 EDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVL 303
            +  E+                            G                         
Sbjct: 242 NNLQELE-------------------KIAVKLNNGTPVLIRDVAKVQFGHGVRYGAATRN 282

Query: 304 TAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYK 363
               +   I       + +  I         ++                G    +     
Sbjct: 283 GEGEVVTGIVMMLKGANSSAVINDVKAKIEQIKETLPEGVTIEPYLDRKGLVDRAIGTVT 342

Query: 364 GTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLG 423
                 A +V+ VL + +   + GL+    I L+++  +A+++L G +  L S+  I   
Sbjct: 343 TNLTEGALIVIFVLILFLGNLRGGLIVASVIPLSMLFAIAMMNLFGVSGNLMSLGAI--D 400

Query: 424 IGLAVDSNILVNERIREENRKNQSVFCSLDM--------GFSRAYSTIFDSN-------I 468
            GL VD  ++V E +      ++  +  ++             +   + +S        +
Sbjct: 401 FGLIVDGAVIVVESVMFGIHTSKKKYAGVEKLSSKQMDTEVRHSAGKMMNSAAFGQIIIL 460

Query: 469 TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              +  + L    G      A T+  +IL ++  +++ V  M    +  K     + +  
Sbjct: 461 IVYVPILALSGVAGKMFHPMAQTVMFAILGALILSLTYVPMMSALALGRKTEHKRNFSDK 520

Query: 529 SRFFLIPDCIAIQFMRARFWGVG---ISILFSICSICLLFTHGLNYGIDFKGGIQLGVLA 585
              F       I     R   +       LF I  I      G       +G   +    
Sbjct: 521 MMDFFQRMYQPILEAALRTKLLVLGLAIGLFVITLIVFANMGGEFIPQLDEGDFAVETRV 580

Query: 586 NRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEI 645
                +  +    +  Q   +  +  D  K  + ++      +         +   ++  
Sbjct: 581 PVGSSIDQMIDVSQKAQTI-LLREYPDEVKQVVNKIGSGEIPTDPMPIEAGDMMVILSPK 639

Query: 646 VPLSTIQNTEIVGPKISREL 665
              +     E +   +   L
Sbjct: 640 SEWTKASGREELAAVMKESL 659



 Score = 50.8 bits (119), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/240 (16%), Positives = 95/240 (39%), Gaps = 10/240 (4%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S + ++       Q         + + +   D   Q+ + ++ +   +++   +    T 
Sbjct: 806  SQVANISFEPGPVQIQRDNAKRRIIVGFNVRDRDVQSIIEDIKQIMNSKVDMPAGYYVTY 865

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALF 714
                +  +E  ++ I+ + I+ + +L+ ++  F     +L   T + L      G FAL 
Sbjct: 866  GGQFQNLQEANQRLIIALPIALLLILVLLFFTFGSMKQSLLIFTAIPLS--AIGGVFALI 923

Query: 715  --GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
               + F+++A    + L G +V + +V+      N           + + K     L   
Sbjct: 924  IRDLPFSISAGIGFIALFGVAVLNGIVLVAEF--NRLDKEGVSDIYERVIKGTRVRLRPV 981

Query: 773  VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
            + T+  A +  LPMA+    G  V    A  +  G++ A + ++ +   + ++  D +AK
Sbjct: 982  LMTATVAALGFLPMALSNSSGAEVQRPLATVVIGGLITATALTLIVLPVLYIYFTDRKAK 1041



 Score = 48.1 bits (112), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/170 (15%), Positives = 60/170 (35%), Gaps = 14/170 (8%)

Query: 675 ISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSV 734
            + I + + I         L   + + L +   +    LFG+  NL ++ A+    G  V
Sbjct: 348 GALIVIFVLILFLGNLRGGLIVASVIPLSMLFAIAMMNLFGVSGNLMSLGAI--DFGLIV 405

Query: 735 NDKVVVYDRMRKNMKLYTTSISFRD-----LIDKSINETLGRSVYTSM----AAFISVLP 785
           +  V+V + +   +       +  +      +D  +  + G+ + ++        I  +P
Sbjct: 406 DGAVIVVESVMFGIHTSKKKYAGVEKLSSKQMDTEVRHSAGKMMNSAAFGQIIILIVYVP 465

Query: 786 MAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           +    G     F   A  + F I+ A   S+     +       + ++ R
Sbjct: 466 ILALSGVAGKMFHPMAQTVMFAILGALILSLTYVPMMSALALGRKTEHKR 515


>gi|237736775|ref|ZP_04567256.1| acriflavin resistance protein B [Fusobacterium mortiferum ATCC
           9817]
 gi|229420637|gb|EEO35684.1| acriflavin resistance protein B [Fusobacterium mortiferum ATCC
           9817]
          Length = 978

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 62/545 (11%), Positives = 155/545 (28%), Gaps = 30/545 (5%)

Query: 54  SHLVLEVDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIAD 113
                     + V   +    +E+   ++       +    Q++I + F      ++   
Sbjct: 8   VTTTWNGAVAEDVETQITKKIEEILPNVEGIDKISSTSSFEQSQIVIEFNFGIDADDKTT 67

Query: 114 KVTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ 173
           ++   L  + + L  D    +         ++ +             E S  I      +
Sbjct: 68  EIQRELSKITNDLPDDADTPVARKVEAGAGNLTMVMMFSAPNRG---ELSTFIDEYLKPK 124

Query: 174 IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFL 233
                   Q         QL  + D  +L     +  ++     + + +           
Sbjct: 125 FESLTGIGQVNVFGNPDKQLQIQFDSDKLAAYNLSPVELYNLISMSSKNLPLGTVKTG-- 182

Query: 234 RDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKP 293
                              + N          +    +    +            +I   
Sbjct: 183 -------------------NKNIIARFMGELNYIDEYENMIIQSNGNTLKLKDVADIVLT 223

Query: 294 LAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVG 353
                D   L+            A  S     + A      L++   P            
Sbjct: 224 TEDFTDKGFLSGKESIVVAVEKSADGSTIELNKAAIKALDSLKSVMPPGTEYKTLLDTSE 283

Query: 354 ADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLT 413
               S S           L  IVL + +   +   +   ++ + +I T A L+L G +L 
Sbjct: 284 DIEQSISSVSSNAVQGLVLATIVLLVFLKNIRATFLVSAALPVAIIFTFAFLALAGTSLN 343

Query: 414 LPSIAGIVLGIGLAVDSNILVNERIREENRKNQSV-FCSLDMGFSRAYSTIFDSNITALI 472
           L S+ G+ +G+G+  D++++V + I     +  S    + + G +    ++  S +T ++
Sbjct: 344 LISLMGLSIGVGMLTDNSVVVVDNIYRHMTELHSPVMEASENGATEVTLSVIASALTTMV 403

Query: 473 ATVVLFFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI--DINP 527
             + + F  G      R  + ++  S + ++  +++++  +    +  K   +    I  
Sbjct: 404 VFIPILFIPGIAREIFRDLSYSIIFSNVAALLVSLTLIPMLASRFLTSKIDITAEGKIFT 463

Query: 528 LSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANR 587
             +   +         R +  G+ I +      +              +G   +     +
Sbjct: 464 KVKSTYLKIINWALVNRLKTLGITIIVFILTVIVGGGMLKVEFMPKQDQGRYSIVAELGK 523

Query: 588 PVDLS 592
            +DL 
Sbjct: 524 GLDLD 528



 Score = 82.4 bits (201), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/274 (13%), Positives = 96/274 (35%), Gaps = 7/274 (2%)

Query: 564 LFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQY 623
           +           K    +  +  +  D   V+ +  S  I        +           
Sbjct: 697 IDVMVRLPKDKRKDINDIQNINIKIGDGKFVKVSDISNVIYAEGSSEINKTDRIYSVTVS 756

Query: 624 QPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY 683
                V    + E + K   E  P +++        +  ++  ++  + + IS   +   
Sbjct: 757 ANDGGVGIRGLQEQMVKAFNEANPPASVSYRWGGDSENLQDSTQQLGMALGISIFLIYAL 816

Query: 684 IWIRFK-WYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYD 742
           +  +F+ +      + ++ L +   +    +FG   ++  +  ++ L G  VN+ +V+ D
Sbjct: 817 LAAQFENFLLPFIILGSVPLSLIGIIIGLVVFGQPVDVMVMVGLILLAGVVVNNAIVLID 876

Query: 743 RMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
            +              + + +S    L   + T+M   + +LP+++    G  +    AI
Sbjct: 877 FI---QLTIERGSGRIEAVVESCRTRLRPILMTTMTTVLGMLPLSLGIGEGSEIYRGMAI 933

Query: 800 PMAFGIVVAASSSIFIAAPILLFIYDWRAKNARI 833
            + FG+  +   ++ I   +   + D+  K  ++
Sbjct: 934 TVMFGLSFSTILTLVIIPILFTLVEDFIEKLGKV 967



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/348 (11%), Positives = 102/348 (29%), Gaps = 5/348 (1%)

Query: 475 VVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           + +        RG   T     L   F +++ +  + +F    K+++    +     + +
Sbjct: 99  LTMVMMFSAPNRGELSTFIDEYLKPKFESLTGIGQVNVFGNPDKQLQIQFDSDKLAAYNL 158

Query: 535 PDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV 594
                   +      + +  + +     +    G    ID    + +    N      V 
Sbjct: 159 SPVELYNLISMSSKNLPLGTVKTGNKNIIARFMGELNYIDEYENMIIQSNGNTLKLKDVA 218

Query: 595 RSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNT 654
              L +    D  F +        V               ++ +    + + P +  +  
Sbjct: 219 DIVLTTEDFTDKGFLSGKESIVVAVEKSADGSTIELNKAAIKALDSLKSVMPPGTEYKTL 278

Query: 655 EIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALF 714
                 I + +       V    +A ++ +               L + I  T  F AL 
Sbjct: 279 LDTSEDIEQSISSVSSNAVQGLVLATIVLLVFLKNIRATFLVSAALPVAIIFTFAFLALA 338

Query: 715 GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVY 774
           G   NL ++  +   +G   ++ VVV D +     +        +  +    E     + 
Sbjct: 339 GTSLNLISLMGLSIGVGMLTDNSVVVVDNI--YRHMTELHSPVMEASENGATEVTLSVIA 396

Query: 775 TSMAAFISVLPMAVWGG---SVIGSFAIPMAFGIVVAASSSIFIAAPI 819
           +++   +  +P+    G    +    +  + F  V A   S+ +   +
Sbjct: 397 SALTTMVVFIPILFIPGIAREIFRDLSYSIIFSNVAALLVSLTLIPML 444


>gi|83859323|ref|ZP_00952844.1| heavy metal efflux pump, CzcA family protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852770|gb|EAP90623.1| heavy metal efflux pump, CzcA family protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 1039

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 70/524 (13%), Positives = 136/524 (25%), Gaps = 48/524 (9%)

Query: 6   WLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNR----ISLGLDLRGGSHLVLEVD 61
           + VI +  +   G             +D FP   P       ++ GL             
Sbjct: 25  FAVIAFVAVFLAGGWS-----WRTLPVDAFPDITPPLVQVFTVTDGL------------- 66

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V  ++    +   S L        +     + +T  F D          V+  L  
Sbjct: 67  SPQEVERYVTFPVETAMSGLPGLEQVRSNSTFGLSVVTAYFEDGTDIYLARQLVSERLSA 126

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
               +     +  L   T     ++    +        I             +       
Sbjct: 127 AREDIPQGFGEPELGPITTGLGQVLFYYLDSADA--DLIGLRTLQDWLVKLDLQTVPGVT 184

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           + L       Q      P  L Q   + A +       N +           + +   + 
Sbjct: 185 EVLSLGGYERQYQVNVRPQALIQYDLSMADVITALERANLNAGAQYIVENDEQYTVRAEG 244

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
           L+  + ++                      +     G         D +           
Sbjct: 245 LLHGEADL-------------------RQVVVKAVNGVPVVMNEIADIVVGGAPRQGLAT 285

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
           +     +   +       + N  I         + A      +             + S 
Sbjct: 286 MNGDGEVVAGLVLKLTGANTNAVIAAVTERLEAVNAALPEGVVARPYYDQSELVNQAVST 345

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                   A LV+++L   +   + GL+   SI  +V   L  + LLG +  L S+ GI 
Sbjct: 346 MTTALWQGALLVVVLLMAFMGGWRPGLIVAASIPFSVAFALIAMRLLGVSANLMSLGGIA 405

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYST-----IFDSNITALIATVV 476
           + IG+ VD  +++ E  R    +      +L +  S A             +   +  V 
Sbjct: 406 IAIGMMVDGAVVIVENARRRLAEGAGGERTLLLASSLAEVIKPLGFSIAIVMLVFLPIVT 465

Query: 477 LFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKM 520
           L    G   R  A  + L++  S+  A+ I  A    +    + 
Sbjct: 466 LQGVEGKTFRPLAFAVILAMAGSLVFALVIAPAASRLLKAPPRP 509



 Score = 68.6 bits (165), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 79/240 (32%), Gaps = 5/240 (2%)

Query: 583 VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
           V     V   +    +       ++  N DGE    + L+    ++ A    +    + +
Sbjct: 260 VNGVPVVMNEIADIVVGGAPRQGLATMNGDGEVVAGLVLKLTGANTNAVIAAVTERLEAV 319

Query: 643 TEIVPLSTIQNTEIVGPKISRELIRKGIVGVI-ISAIAMLIYIWIRFKWYFALGAITTLI 701
              +P   +        ++  + +      +   + + +++ +     W   L    ++ 
Sbjct: 320 NAALPEGVVARPYYDQSELVNQAVSTMTTALWQGALLVVVLLMAFMGGWRPGLIVAASIP 379

Query: 702 LDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLI 761
             +   L    L G+  NL ++  +   IG  V+  VV+ +  R+ +           L+
Sbjct: 380 FSVAFALIAMRLLGVSANLMSLGGIAIAIGMMVDGAVVIVENARRRLAEGAGGERTL-LL 438

Query: 762 DKSINETLGRSVYTSMAAFISVLPMAVWGGS---VIGSFAIPMAFGIVVAASSSIFIAAP 818
             S+ E +    ++     +  LP+    G         A  +   +  +   ++ IA  
Sbjct: 439 ASSLAEVIKPLGFSIAIVMLVFLPIVTLQGVEGKTFRPLAFAVILAMAGSLVFALVIAPA 498



 Score = 58.5 bits (139), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 77/231 (33%), Gaps = 7/231 (3%)

Query: 597  NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV-PLSTIQNTE 655
             L  ++  +   Q         + +Q    D    + V E      TE+  P   +    
Sbjct: 799  ALARVERIEGPRQVTRENGRRFITIQSNVRDRDIGSFVEEAQAAVQTELDLPPGYLLEWG 858

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFG 715
                   +   R  ++  +   +  L+ +    +   AL  +  + L +   L    L G
Sbjct: 859  GQFELQQQANARFALIVPVTLGLVFLLLLAAFGRVKSALLIVLNIPLALVGGLVALWLAG 918

Query: 716  IEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYT 775
            +  ++ A    + L G ++ + +V+   +    +L         L  +     +   + T
Sbjct: 919  LNLSVPASVGFIALFGIALGNAMVLVSFL---DRLALGGGDREALSVQGALLRVRPVLMT 975

Query: 776  SMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            +    + + P+      G  V    A+ +  G++ +   ++FI   +  + 
Sbjct: 976  AATTMLGLAPLLFASGVGSEVQRPLAVVVIGGLISSTLVTLFILPAVYAWF 1026


>gi|325982138|ref|YP_004294540.1| heavy metal efflux pump, CzcA family [Nitrosomonas sp. AL212]
 gi|325531657|gb|ADZ26378.1| heavy metal efflux pump, CzcA family [Nitrosomonas sp. AL212]
          Length = 1097

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 65/536 (12%), Positives = 157/536 (29%), Gaps = 53/536 (9%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           M     L+I+ S I  I  + A  +      +D FP                 +++ ++V
Sbjct: 9   MIKQRLLIIVISFILLIAGVYAAKHL----SVDAFPDV---------------TNIQVQV 49

Query: 61  DE------DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADK 114
                    + +   + +  +   + L          +   + ITL F D          
Sbjct: 50  ATVAIGRSPEEMERLVTVPVEIAMTGLPGLVEMRSMNKSGLSLITLVFTDKTDVFFARQL 109

Query: 115 VTLFLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQ- 173
           V   +  V  +L       L   +T        +  + D       ++ +   R   D  
Sbjct: 110 VMERIIDVTPRLIPGITPVLGPVSTGLGEVYQYTLEHPDDGKRPLTQEELTERRTIQDWV 169

Query: 174 ----IGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFG 229
               +       +       + +     DP++LR    T  ++       N +  G +  
Sbjct: 170 VRPMLRSIRGVAEINSIGGHVKEYQVYIDPNKLRHYDLTLTQVDRALASNNENASGNILS 229

Query: 230 VRFLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDN 289
           + + +       L+    +I  I L               V    +            + 
Sbjct: 230 LPYEQYLIRGVGLITSLDDIRNIVLREMDGIPIYVRDVAHVTFGGEVRQGASIKNGYTEA 289

Query: 290 IGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE 349
           +                     +                 +     R         +   
Sbjct: 290 VSG-----------------IVMMLRGGNAKEIVNRVKEKVAEINERGLLPGGLQIVPFY 332

Query: 350 RNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLG 409
                   +              V++V+F+ +   +  LV   ++ +  ++T  +++ LG
Sbjct: 333 DRTVMVDAALESVYKVLIEALIFVILVMFICLGNFRVSLVVCATLIITPLVTFIIMNYLG 392

Query: 410 ATLTLPSIAGIVLGIGLAVDSNILVNERIR---EENRKNQSVFCSLDMGFSRAYSTIFDS 466
               L S+ G+ + IGL VD  ++V E I        + +S   ++    +   S +   
Sbjct: 393 IPANLMSLGGLAIAIGLMVDPTVVVVENIFLRLSHAPEGESKIVTIAKATAEVGSPVIYG 452

Query: 467 NITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKK 519
            I  ++  + L       G      A+T+ +++L+++  ++ +   +  ++++   
Sbjct: 453 IIIIVLVFLPLMTLEGMEGKMFSPLAVTISIALLVALIVSVVLSPVLCDYLLKGGH 508



 Score = 71.6 bits (173), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 81/217 (37%), Gaps = 8/217 (3%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
             +   +  + +V E+ ++ +              V    + E + K ++  +I  I ++
Sbjct: 301 NAKEIVNRVKEKVAEINERGLLPGGLQIVPFYDRTVMVDAALESVYKVLIEALIFVILVM 360

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
                 F+    + A  TLI+    T       GI  NL ++  +   IG  V+  VVV 
Sbjct: 361 FICLGNFRVSLVVCA--TLIITPLVTFIIMNYLGIPANLMSLGGLAIAIGLMVDPTVVVV 418

Query: 742 DRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSF---A 798
           + +   +       S    I K+  E     +Y  +   +  LP+    G     F   A
Sbjct: 419 ENIFLRLSHAPEGESKIVTIAKATAEVGSPVIYGIIIIVLVFLPLMTLEGMEGKMFSPLA 478

Query: 799 IPMAFGIVVAASSSIFIAAPIL--LFIYDWRAKNARI 833
           + ++  ++VA   S+ + +P+L    +     +  +I
Sbjct: 479 VTISIALLVALIVSV-VLSPVLCDYLLKGGHEEETKI 514



 Score = 62.8 bits (150), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 84/241 (34%), Gaps = 9/241 (3%)

Query: 596  SNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTE 655
            S +  +++ D             V +     +    + V E+  +   EI        + 
Sbjct: 807  SAVAEIRVVDGPAIISREFAKRRVVVGANVHERDLGSFVAELQARTAKEIQLPQGYYFSW 866

Query: 656  IVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL-ILDITKTLGFFAL 713
                +     + K  V V I+  A+   +++ F     AL   T L    +   +G F L
Sbjct: 867  GGQFENMERAMEKLSVIVPITFAAIFFLLFMLFNSVKLALLIFTALPFAAVGGVVGLF-L 925

Query: 714  FGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSV 773
             G   ++ A    + + G S+ + VV+   +++   L     S  D +  S +      +
Sbjct: 926  TGEYLSVPASVGFIAVWGISILNGVVLVSFIKE---LREQGYSVADAVKTSCDARFRPVL 982

Query: 774  YTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKN 830
             T+ A  + + P  +    G  V    AI +  G++     +  +   +  +  D   K+
Sbjct: 983  ITAAATILGLAPFLIATGLGSEVQRPLAIVVVCGLMTGIVMTKVVVPMMYRWFDDMPDKS 1042

Query: 831  A 831
             
Sbjct: 1043 K 1043


>gi|302039034|ref|YP_003799356.1| cation efflux system protein CzcA [Candidatus Nitrospira defluvii]
 gi|300607098|emb|CBK43431.1| Cation efflux system protein CzcA [Candidatus Nitrospira defluvii]
          Length = 1042

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 73/560 (13%), Positives = 153/560 (27%), Gaps = 49/560 (8%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           +R +  ++ L  M    GL            +D +P                   ++ E 
Sbjct: 10  LRQSILVIGLACMFSVAGLFA-----FQSIPIDAYPDVTNVQ-----------VQVLTEA 53

Query: 61  DE--DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLF 118
                  V  F+    +   + L          +   +++T+ F D          V   
Sbjct: 54  PGLSPVEVERFITYPIELQMNGLPGLTEIRSLSKFALSQLTVVFEDDVDVYFARQLVLER 113

Query: 119 LQGVNSKLNVDPKKNLLVTTTEKEISIVLS-------QNNIDQVISHAIEQSMEIIRQRI 171
           +  V  +L       L   TT                  +  +V +    Q         
Sbjct: 114 IMAVKERLPPGIDPVLAPVTTGLGEIYQYYLEGPQAHATSAARVEAELTNQRTVQDWVLR 173

Query: 172 DQIGISESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVR 231
             +      I   G    + Q     DP +LR+   T   +       N +  G +    
Sbjct: 174 PLLKSVPGVIDVNGLGGFVKQFQVLVDPDKLRKYSLTLHDIYEAVQKNNANSGGNVLERH 233

Query: 232 FLRDSDGNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIG 291
             R       L++   +I  I +  A            V I              R+ + 
Sbjct: 234 AERAIVRGLGLIKTLPDIERIVVKEAGGTPVFVRDVAEVRIGHAVRHGAAVLNGEREVV- 292

Query: 292 KPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERN 351
                               +                 +               I     
Sbjct: 293 ----------------AGTVLMLRGGNAREVVQAVKRRVDTIQQDGLLSEGLKIIPFYDR 336

Query: 352 VGADLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGAT 411
           +     + +  +        LV +V F+ + + +  +V   S+ +  ++T  ++  +G +
Sbjct: 337 IELVTAAINTVRDALIEGIVLVTVVFFLFLGHVRSAIVVTVSLLVTPLMTFLVMQRVGLS 396

Query: 412 LTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNI--- 468
             L ++ G+ +GIG   D +++V E +     +N     S      RA S +    +   
Sbjct: 397 ANLMTLGGLAIGIGEIADGSLVVVENVYRHLSENHLHQRSRLEVIFRATSEVGRPIVFGI 456

Query: 469 ----TALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSID 524
                  +  + L    G      A T+ +S+L+S+   +++   +   I+R    +   
Sbjct: 457 LIISVVFLPLMTLHGMEGKMFAPLAYTLVISLLMSVVVTLTLSPVLASLILRGDHPEETR 516

Query: 525 INPLSRFFLIPDCIAIQFMR 544
           +    +    P        R
Sbjct: 517 LTRWMKARYQPVLRWTLDHR 536



 Score = 54.3 bits (128), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 65/160 (40%), Gaps = 6/160 (3%)

Query: 672 GVIISAIAM-LIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            +I   + + +++         A+    +L++    T       G+  NL  +  +   I
Sbjct: 350 ALIEGIVLVTVVFFLFLGHVRSAIVVTVSLLVTPLMTFLVMQRVGLSANLMTLGGLAIGI 409

Query: 731 GYSVNDKVVVYDRM-RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW 789
           G   +  +VV + + R   + +    S  ++I ++ +E     V+  +   +  LP+   
Sbjct: 410 GEIADGSLVVVENVYRHLSENHLHQRSRLEVIFRATSEVGRPIVFGILIISVVFLPLMTL 469

Query: 790 GGSVIGSFAIPMAFGIVVAASSSIFIA---APILLFIYDW 826
            G     FA P+A+ +V++   S+ +    +P+L  +   
Sbjct: 470 HGMEGKMFA-PLAYTLVISLLMSVVVTLTLSPVLASLILR 508



 Score = 45.8 bits (106), Expect = 0.032,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 55/160 (34%), Gaps = 7/160 (4%)

Query: 670  IVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLT 728
            +V V I+   +   ++  F    +A   I  L   +   +    L     ++ A    + 
Sbjct: 874  LVVVPITLGLVFFLLFWAFHSLRYASLIILNLPFALIGGVVSLWLSDQYLSVPASIGFIE 933

Query: 729  LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
            L G +V + +V+   +    +L          I       L   V T M   + +LP+ +
Sbjct: 934  LFGLAVGNGIVLVSYIN---QLRNEGQQTEAAIMTGCVLRLRPVVMTMMTTLLGLLPLVL 990

Query: 789  ---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
                G  V    A  +  G+  + + ++ +   +     +
Sbjct: 991  AQGIGAEVQRPLATVVVGGLFTSTALTLLVLPALYRTFAE 1030


>gi|107023053|ref|YP_621380.1| acriflavin resistance protein [Burkholderia cenocepacia AU 1054]
 gi|116686706|ref|YP_839953.1| acriflavin resistance protein [Burkholderia cenocepacia HI2424]
 gi|105893242|gb|ABF76407.1| acriflavin resistance protein [Burkholderia cenocepacia AU 1054]
 gi|116652421|gb|ABK13060.1| acriflavin resistance protein [Burkholderia cenocepacia HI2424]
          Length = 1082

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 70/551 (12%), Positives = 150/551 (27%), Gaps = 44/551 (7%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE- 59
           +R     V+L  +I   G     P  L ++  D FPS                  +V   
Sbjct: 8   LRRPYTFVVLALLIFIAG-----PLALLRTPTDIFPSIDIPV-----------VSIVWSY 51

Query: 60  --VDEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                +D        Y   L S +              + + + F           +   
Sbjct: 52  NGFSAEDMAKRITSNYERALTSDVDDIEHIESQSLNGVSVVKIFFHPGADINRAIAEAAS 111

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
               +   L        ++T     + I+    + D +     +           Q+   
Sbjct: 112 NAASILRILPPGTLPPNIITYNASTVPILQLGLSSDTLAEQ--QLYDLGNSFIRTQLATV 169

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           +     L     + Q+  + D   L+        +       N    G    +     + 
Sbjct: 170 QGAAVPLPFGGKIRQIVVDLDTRALQAKGLAPIDVVNAINAQNLILPGGTAKIGTHEYNV 229

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
                 +    +                     D+    +G    +     ++    A  
Sbjct: 230 QMNGSTQTVAAL--------------------NDLPVKTIGGNVVYVRDVAHVRDGYAPQ 269

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
            +   +                S    I+    +   + AG          +        
Sbjct: 270 TNIVRVDGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGLPKALHIAPLDDQSVFVKA 329

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           +         I A L  +++ + +   +  L+   +I L V+ +L  LS LG T+ + ++
Sbjct: 330 AVQGVVREALIAACLTALMILLFLGSWRATLIIAITIPLAVLTSLLALSALGQTINIMTL 389

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
            G+ L +G+ VD   +  E I         +  ++  G        F S ++  I  V +
Sbjct: 390 GGLALAVGILVDDATVAIENITHHLELGAPLEEAILTGSGEIAVPTFVSTLSICIVFVPM 449

Query: 478 FFFGG---GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLI 534
           F   G         A  +  +++ S F + ++V  + + ++R K          +    +
Sbjct: 450 FLLTGVARYLFVPLAEAVIFAMIASYFFSRTLVPTLAMALMRAKGSGRPPRGVFAPLVHV 509

Query: 535 PDCIAIQFMRA 545
               A    R 
Sbjct: 510 ARFQAAFEHRF 520



 Score = 64.7 bits (155), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/238 (14%), Positives = 81/238 (34%), Gaps = 8/238 (3%)

Query: 590 DLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLS 649
           ++  VR                  +      L  +   S +   +++ VK  + +I    
Sbjct: 252 NVVYVRDVAHVRDGYAPQTNIVRVDGKRAALLTVEKTGSASTLTIIDQVKAMLPKIAAGL 311

Query: 650 TIQNTEIVGPKISRELI--RKGIV--GVIISAIAMLIYIWIRFKWYFALGAITTLILDIT 705
                       S  +    +G+V   +I + +  L+ +     W   L    T+ L + 
Sbjct: 312 PKALHIAPLDDQSVFVKAAVQGVVREALIAACLTALMILLFLGSWRATLIIAITIPLAVL 371

Query: 706 KTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSI 765
            +L   +  G   N+  +  +   +G  V+D  V  + +              + I    
Sbjct: 372 TSLLALSALGQTINIMTLGGLALAVGILVDDATVAIENI---THHLELGAPLEEAILTGS 428

Query: 766 NETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFI 823
            E    +  ++++  I  +PM +  G     F +P+A  ++ A  +S F +  ++  +
Sbjct: 429 GEIAVPTFVSTLSICIVFVPMFLLTGVARYLF-VPLAEAVIFAMIASYFFSRTLVPTL 485



 Score = 57.0 bits (135), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 56/158 (35%), Gaps = 7/158 (4%)

Query: 673  VIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            + ++   + + + + F  W   L  +  L   +        +     ++ A+   +  IG
Sbjct: 905  LALAISLVYLLMVVNFQSWLDPLVIVGGLPASLAGIAWMLFVTRTTLSVPALTGTILCIG 964

Query: 732  YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW-- 789
             +  + ++V +  R+ +               +        V T++A  I +LPMA+   
Sbjct: 965  IATANSILVVNAARELLAG---GEPPWQAALDAGFARFRPVVMTALAMLIGMLPMALGLG 1021

Query: 790  -GGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
             GG         +  G+     S++     +  F++ W
Sbjct: 1022 DGGEQNAPLGRAVIGGLAFGTVSTLLFVPVLFGFVHAW 1059


>gi|117676239|ref|YP_863815.1| CzcA family heavy metal efflux protein [Shewanella sp. ANA-3]
 gi|117615063|gb|ABK50516.1| heavy metal efflux pump, CzcA family [Shewanella sp. ANA-3]
          Length = 1048

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 65/600 (10%), Positives = 144/600 (24%), Gaps = 45/600 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R +     L  M      +      +    +D  P       I                 
Sbjct: 7   RRSVANRFLVMMGALFLSIWGTWTIINT-PVDALPDLSDVQVI---------IKTSYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          +          +   + + + F D         +V  +L  
Sbjct: 57  APQIVENQVTYPLTTTMLSVPGAKTVRGFSQFGDSYVYVIFEDGTDLYWARSRVLEYLNQ 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
           V  KL       +    T                     E           ++    +  
Sbjct: 117 VQGKLPAGVSSEIGPDATGVGWIFEY-ALVDRSGKHDLSELRSLQDWFLKFELKTIPNVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +      ++ Q   + DP +L Q      ++       N    G    +           
Sbjct: 176 EVASVGGVVKQYQIQLDPVKLTQYGIGLPEVKQALSSSNQEAGGSSVEIAESEYMVRASG 235

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +                            +          +      I     +     
Sbjct: 236 YL-------------------QTIDDFKNIVLKTGENGVPVYLRDVARIQMGPEMRRGIA 276

Query: 302 VLTAPV-INQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDS 360
            L     +   +   ++  +    I         L+A        +           +  
Sbjct: 277 ELNGQGEVAGGVVILRSGKNAREVITAVRDKLDTLKASLPEGVEIVTTYDRSQLIDRAID 336

Query: 361 IYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGI 420
                      +V +V  + + + +  LVA  S+ L + +   ++   G    + S+ GI
Sbjct: 337 NLSYKLLEEFIVVAVVCALFLWHVRSALVAIISLPLGLCIAFIVMHFQGLNANIMSLGGI 396

Query: 421 VLGIGLAVDSNILVNERIREE-----------NRKNQSVFCSLDMGFSRAYSTIFDSNIT 469
            + +G  VD+ I++ E   +               N + +  +          +F S + 
Sbjct: 397 AIAVGAMVDAAIVMIENAHKRLEEWDHQHPGEQIDNATRWKVITDASVEVGPALFISLLI 456

Query: 470 ALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDIN 526
             ++ + +F      G      A T   S+  +   AI ++  +M F IR K        
Sbjct: 457 ITLSFIPIFTLEGQEGRLFGPLAFTKTYSMAGAAILAIIVIPILMGFWIRGKIPAETSNP 516

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
                      + ++ +      + ++ L     I  L   G  +      G  L + + 
Sbjct: 517 LNRLLIKAYHPLLLRVLHWPKTTLLVAALSIFTVIWPLSQVGGEFLPKINEGDLLYMPST 576



 Score = 55.9 bits (132), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 89/287 (31%), Gaps = 14/287 (4%)

Query: 556  FSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEK 615
             +   I + +             + +     + + L  V           +  +N     
Sbjct: 763  VARYPINIRYPQDYRNSPQALREMPILTPMKQQITLGDVADIKVVSGPTMLKTENARPAS 822

Query: 616  NFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVII 675
               V  + +   SV       + +K                +    +++L  K +V + +
Sbjct: 823  WIYVDARGRDMVSVVNDIKTAISEKVKLRPGTSVAFSGQFELLEHANKKL--KLMVPMTV 880

Query: 676  SAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVN 735
              I +L+Y+  R +   AL  + +L   +   + F    G   ++      + L G +  
Sbjct: 881  MIIFILLYLAFR-RVDEALLILMSLPFALVGGIWFLYWQGFHMSVATGTGFIALAGVAAE 939

Query: 736  DKVVVYDRMRKNMKLYTT--------SISFRDLIDKSINETLGRSVYTSMAAFISVLPMA 787
              VV+   +R  ++ +               + +       +     T       +LP+ 
Sbjct: 940  FGVVMLMYLRHAIEAHPKLSRKETFTPEGLDEALYHGAVLRVRPKAMTVAVIVAGLLPIL 999

Query: 788  V---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
                 G  V+   A PM  G++ A   S+FI       I+  R K +
Sbjct: 1000 WGTGAGSEVMSRIAAPMIGGMITAPLLSLFIIPAAYKLIWLRRHKKS 1046


>gi|160877406|ref|YP_001556722.1| CzcA family heavy metal efflux protein [Shewanella baltica OS195]
 gi|160862928|gb|ABX51462.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS195]
 gi|315269610|gb|ADT96463.1| heavy metal efflux pump, CzcA family [Shewanella baltica OS678]
          Length = 1049

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 73/597 (12%), Positives = 172/597 (28%), Gaps = 53/597 (8%)

Query: 7   LVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLE----VDE 62
           ++I+  MI   G+       L ++ LD  P                   ++++       
Sbjct: 16  VLIIAIMITVWGV-----QELRKTPLDALPDLSD-------------VQVIIKTPHPGQA 57

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +          +              + + + F D         +V  +L  +
Sbjct: 58  PKLVEEQVTYPLSTAMLAVPGAKTVRGYSMFGDSYVYVIFEDGTDIYWARSRVLEYLSQI 117

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
           +S+L  + + +L    +                     +           ++       +
Sbjct: 118 SSRLPQNVQPSLGPDASGVGWVYEY-ALVDRSGNLDLSQLKSLQDWYLKLELQSVAGVSE 176

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                 +        +P ++       A +       N+   G +  +         +  
Sbjct: 177 VATVGGMEQTYQIVLEPDKMAIYKLDIATIKQAIDKANSEAGGSVIEMAEAEYMVRAKGY 236

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
            +   +   I L   + +    T K V  +       R   E+  +              
Sbjct: 237 RQTLEDFREIPLGITSPSGTGLTLKDVATVRKGPASRRGIAELDGE-------------- 282

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIY 362
                +   I   +   +   TI+T       L+AG       I         L S    
Sbjct: 283 ---GEVVGGIVVMRYGENALATIDTVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNL 339

Query: 363 KGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVL 422
                    +V +V  + +L+ +  LVA  ++ L++++   +++ +G    + S+ GI +
Sbjct: 340 FSKVVEEMLVVGLVCLLFLLHARSTLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAI 399

Query: 423 GIGLAVDSNILVNERIREENRKN----------QSVFCSLDMGFSRAYSTIFDSNITALI 472
            IG  VD  I++ E + +               +  +  +          +F S I   +
Sbjct: 400 AIGAVVDGAIVMIENLHKHLEHFKADHDREPDTKEHWRIVTEASIEVGPALFFSLIIITL 459

Query: 473 ATVVLF---FFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLS 529
           + V +F      G      A T   ++  + F +I++V  +M + IR K           
Sbjct: 460 SFVPVFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSERSNPISR 519

Query: 530 RFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
               I        ++     + ++++    +   +   G  +    + G  L +   
Sbjct: 520 FLIAIYQPSLKLVLKFPKVTLMLALIALASAWYPMTRMGSEFMPALEEGDLLYMPTA 576



 Score = 62.8 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 81/243 (33%), Gaps = 13/243 (5%)

Query: 600  SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGP 659
            +    +        E   L+   +   +  +    +   K  +   + +    +    G 
Sbjct: 802  ADIEINDGAPMLKSENGRLISWVFIDIEGTSIGEYIATAKTALDAELVVPPRYSYSFAGQ 861

Query: 660  KISRELIR---KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGI 716
                + +    K ++ + ++ I +L+ +        ++  + +L   +  +     L   
Sbjct: 862  YEYMQRVDAKLKQVIPMALAVIFILLMMTFGSTIQASII-MLSLPFALVGSTWLLYLLDY 920

Query: 717  EFNLTAVAAVLTLIGYSVNDKVVVYD------RMRKNMKLYTTSISFRDLIDKSINETLG 770
              ++     ++ L G +    VV+        + R+    Y +    ++ + +     + 
Sbjct: 921  NISVAVAVGMIALAGVAAEFGVVMLVYLNNAIKHRQEKDNYHSVNDLKEALIEGAVMRIR 980

Query: 771  RSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                T    F  +LP+      G  V+   A PM  G+V A   S+F+   + L IY  +
Sbjct: 981  PKAMTVATIFFGLLPIMWGAGSGNDVMQKIAAPMVGGMVTAPILSLFVLPALYLLIYSRK 1040

Query: 828  AKN 830
               
Sbjct: 1041 LNK 1043



 Score = 50.1 bits (117), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 83/231 (35%), Gaps = 15/231 (6%)

Query: 613 GEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIV- 671
           G    +   +            LE +K  + + V +    +   +  K    L  K +  
Sbjct: 287 GGIVVMRYGENALATIDTVKAKLEELKAGLPDGVEIIPTYDRSHLILKSVDNLFSKVVEE 346

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            +++  + +L  +  R      L A+ TL L I          G+  N+ ++  +   IG
Sbjct: 347 MLVVGLVCLLFLLHAR----STLVAVITLPLSILIAFIVMNKMGVNANIMSLGGIAIAIG 402

Query: 732 YSVNDKVVVYDRMRKNMKL----YTTSISFRD---LIDKSINETLGRSVYTSMAAFISVL 784
             V+  +V+ + + K+++     +      ++   ++ ++  E      ++ +   +S +
Sbjct: 403 AVVDGAIVMIENLHKHLEHFKADHDREPDTKEHWRIVTEASIEVGPALFFSLIIITLSFV 462

Query: 785 PMAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWRAKNAR 832
           P+          F   A    F +  AA  SI +   ++ +    +  + R
Sbjct: 463 PVFALEAQEGRLFAPLAYTKTFAMAAAAFLSITLVPILMGYFIRGKIPSER 513


>gi|257091585|ref|YP_003165228.1| hypothetical protein CAP2UW1_4654 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257048594|gb|ACV37781.1| hypothetical protein CAP2UW1_4654 [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 1044

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 76/594 (12%), Positives = 164/594 (27%), Gaps = 45/594 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   ++     I   G+   L     ++ +D  P       I          +      
Sbjct: 11  RNRFLVLFATLFITIAGIYAVL-----RTPIDALPDLSDVQVI---------VYTEYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTAMLSVPKSKVVRGFSFFGASFVYIIFEDGTDIYWARSRVLEYLNF 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
            +S++      +L    T        +    D       E           Q+  +    
Sbjct: 117 ASSRMPKGVTPSLGPDATGVGWVYQYALLAKD---KTLAELRTIQDWYVRYQLTKAHGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       +       DP +LR       K++      N    G +  +         + 
Sbjct: 174 EVASIGGFVQTYQVTVDPVKLRSYGIPLMKVAQVIRDSNRDVGGRVVEMAETEYMVRGKG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +  K ++  + +               V++  DE           +             
Sbjct: 234 YLRGKSDLEMLVVKSDKGTPVLIRDIARVELVPDERRGLTELNGEGE------------- 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +    I         +  G                   +   
Sbjct: 281 ------VVSGIAMARYGANALEVIHNLKAKIDEIGGGLPAGVTVETVYDRSELIHRAIDT 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            K T    A +V +V  + +++ +  LVA   + + V++    +  LG    L S+ GI 
Sbjct: 335 LKRTLIEEAVIVALVCIVFLMHVRSALVAILMLPVGVLIAFIAMRSLGLNSNLMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREE------NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATV 475
           + IG  +D+ I++ E   +                ++          +F S +   ++ +
Sbjct: 395 IAIGAMIDAAIVMIENAHKHLERLPEGHTTAERADAMLAACKEVGPALFFSLLIITVSFL 454

Query: 476 VLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFF 532
            +F      G      A T   S+  +   ++++V  +M+  IR K M            
Sbjct: 455 PVFALEGQEGRLFSPLAYTKTFSMAGAALLSVTLVPVLMMLFIRGKIMPEAKNPVNRFLI 514

Query: 533 LIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            +   I    MR +   +  +++  + SI      G  +      G  L + A+
Sbjct: 515 WVYRPIIAGIMRWKKTTIVAAVVALVASIYPASQLGSEFMPTLNEGSLLYMPAS 568



 Score = 58.2 bits (138), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/162 (16%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            VI++ + ++  + +R     AL AI  L + +          G+  NL ++  +   IG
Sbjct: 343 AVIVALVCIVFLMHVR----SALVAILMLPVGVLIAFIAMRSLGLNSNLMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMR---KNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             ++  +V+ +      + +    T+    D +  +  E      ++ +   +S LP+  
Sbjct: 399 AMIDAAIVMIENAHKHLERLPEGHTTAERADAMLAACKEVGPALFFSLLIITVSFLPVFA 458

Query: 789 WGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
             G     F   A    F +  AA  S+ +   +++     +
Sbjct: 459 LEGQEGRLFSPLAYTKTFSMAGAALLSVTLVPVLMMLFIRGK 500



 Score = 51.6 bits (121), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 84/264 (31%), Gaps = 14/264 (5%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             VL        +    L  + +   +             +     D    + V +  K  
Sbjct: 778  EVLIPTMDGAMIPLGQLARVGVAKGAPSIRTENALLSAYIFVDIRDRDIGSYVADAKKAV 837

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTL 700
              ++        T     +     I K  + + ++ +++ + +++ F +    L  + ++
Sbjct: 838  AEQVSFPPGYYVTWSGQFEYMERAIEKMKIVIPVTLLSIFLLLYLNFKRLTETLIVMLSV 897

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY---DRMRKNMKLYTTSI-- 755
               +   +      G   ++      + L G +    V++    D   + +K    +   
Sbjct: 898  PFALVGGVWLMWWLGYNLSVAVAVGFIALAGVAAETGVIMLIYLDHAWEALKAKRRTDNQ 957

Query: 756  -----SFRDLIDKSINETLGRSVYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVV 807
                    + I +   E +   + T +A    +LP+      G  V+   A PM  G++ 
Sbjct: 958  APTLHDLYEAIMEGAVERVRPKMMTVVAIMAGLLPIMWGTGTGSEVMSRIAAPMVGGMIS 1017

Query: 808  AASSSIFIAAPILLFIYDWRAKNA 831
            +   ++ +   I   +  WR K  
Sbjct: 1018 STVLTLAVIPAIYALVKQWRIKRG 1041


>gi|212637312|ref|YP_002313837.1| heavy metal efflux pump CzcA [Shewanella piezotolerans WP3]
 gi|212558796|gb|ACJ31250.1| Heavy metal efflux pump CzcA [Shewanella piezotolerans WP3]
          Length = 1082

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 73/621 (11%), Positives = 177/621 (28%), Gaps = 58/621 (9%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNGF 69
           L  ++  +  +IA    LP+  LD FP                   + +    +      
Sbjct: 14  LMVVLALLAAVIASAAMLPKLNLDAFPDVTN-------------VQVTVNTAAEGLAAEE 60

Query: 70  LQM----YSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSK 125
           ++       +     L          R   + +T+ FA+         +V   LQ     
Sbjct: 61  VEKLISYPVESAMYALPSVTEVRSLSRTGLSIVTVVFAEGTDIYFARQQVFEQLQAAREM 120

Query: 126 LNVDPKKNLL-VTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRL 184
           +        +   T+                   A E            +       + L
Sbjct: 121 IPDGVGVPEIGPNTSGLGQIYQYILRAEPGSGVDASELRSLNDYLVKLIMMPVGGVTEVL 180

Query: 185 GSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVE 244
                + Q   + DP+++R    +  +++      N +  G+        D    Q +V 
Sbjct: 181 SFGGEVRQYQVQIDPNKMRSYGLSMEQVTSALESNNRNAGGWFM------DQGQEQLVVR 234

Query: 245 DKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLT 304
               +             P        +   ++    +    R            G    
Sbjct: 235 GYGLLPAGDAGLKAITQIPVAEVAGTPVRVSDIANVEYGSEIRVGAVTMTRRDEAGNQQA 294

Query: 305 APVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKG 364
              +   +   +   +   TI+      A++           V          +    + 
Sbjct: 295 LGEVVAGVVLKRMGANTKATIDDISERTALIEQALPEGVSFEVFYDQADLVDKAVETVRD 354

Query: 365 TCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGI 424
              +    ++++L + ++  +  ++   SI +++ L L ++S  G +  L S+ G+ + I
Sbjct: 355 ALLMAFVFIVVILALFLVNIRATMLVLLSIPVSIGLALMVMSYFGMSANLMSLGGLAVAI 414

Query: 425 GLAVDSNILVNERIREENRKNQSVFCS-------------------------------LD 453
           G+ VD ++++ E I +   +      S                               + 
Sbjct: 415 GMLVDGSVVMVENIFKHLTQPDRRHLSEAQARASGEVDPHHADEDGIDAGERSGIAMRVM 474

Query: 454 MGFSRAYSTIFDSNITALIATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAM 510
           +      S IF +    ++    LF      G   +  AI++ L+++ ++  A+  V A+
Sbjct: 475 LAAKEVCSPIFFATAIIIVVFAPLFALEGVEGKLFQPMAISIILAMISALLVALIAVPAL 534

Query: 511 MIFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLN 570
            +++ +                     ++    + +   +   ++F++  + L       
Sbjct: 535 AVYLFKRGVTLKESAVLKPIEAGYRKLLSATMAKPKVVVITAVVMFAMSMMLLPRLGTEF 594

Query: 571 YGIDFKGGIQLGVLANRPVDL 591
                +G I L V       L
Sbjct: 595 VPELEEGTINLRVTLAPTASL 615



 Score = 77.0 bits (187), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 94/250 (37%), Gaps = 8/250 (3%)

Query: 589  VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
             + + VR    +  + +++  N   +      +            V+  +   + +    
Sbjct: 825  ANGATVRLGEVADVVIEMAPPNIRRDDVQRRVVVQANVAGRDMGSVVNDIYAVVPQAELP 884

Query: 649  STIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTL 708
                       +  +   +K ++ V IS   + + ++  F     +G I   +  +    
Sbjct: 885  PGYTVVVGGQYENQQRAQQKLMLVVPISIALIALLLYFSFGSIKQVGLIMANV-PLALIG 943

Query: 709  GFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRM--RKNMKLYTTSISFRDLIDKS 764
            G  AL+  G   ++ +    +TL G +V + VV+ D +  R+      ++ S  + + + 
Sbjct: 944  GVVALYVSGTYLSVPSSIGFITLFGVAVLNGVVLVDSINQRRASVKSESNESLFEAVYEG 1003

Query: 765  INETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVAASSSIFIAAPILL 821
                L   + T++ + + ++P+ +    G  +    AI +  G+  + + ++ +   +  
Sbjct: 1004 TVGRLRPVLMTALTSALGLIPILISSGVGSEIQQPLAIVIIGGLFSSTALTLLVLPTLYR 1063

Query: 822  FIYDWRAKNA 831
            ++Y  RA   
Sbjct: 1064 WLYQDRANKG 1073



 Score = 65.5 bits (157), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 84/263 (31%), Gaps = 34/263 (12%)

Query: 597 NLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEI 656
            +   +  +   Q   GE    V L+    ++ A    +      I + +P         
Sbjct: 280 AVTMTRRDEAGNQQALGEVVAGVVLKRMGANTKATIDDISERTALIEQALPEGVSFEVFY 339

Query: 657 VGPKISRELIRKGIVGVIISAIAMLIYIWIRF-KWYFALGAITTLILDITKTLGFFALFG 715
               +  + +      ++++ + +++ + +        +  + ++ + I   L   + FG
Sbjct: 340 DQADLVDKAVETVRDALLMAFVFIVVILALFLVNIRATMLVLLSIPVSIGLALMVMSYFG 399

Query: 716 IEFNLTAVAAVLTLIGYSVNDKVVVYDRMR----------------------------KN 747
           +  NL ++  +   IG  V+  VV+ + +                             ++
Sbjct: 400 MSANLMSLGGLAVAIGMLVDGSVVMVENIFKHLTQPDRRHLSEAQARASGEVDPHHADED 459

Query: 748 MKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGGSVIGSFAIPMAFGIVV 807
                        +  +  E      + +    +   P+    G     F  PMA  I++
Sbjct: 460 GIDAGERSGIAMRVMLAAKEVCSPIFFATAIIIVVFAPLFALEGVEGKLFQ-PMAISIIL 518

Query: 808 AASSSIFIA----APILLFIYDW 826
           A  S++ +A      + ++++  
Sbjct: 519 AMISALLVALIAVPALAVYLFKR 541


>gi|30248392|ref|NP_840462.1| acriflavin resistance protein:heavy metal efflux pump CzcA
           [Nitrosomonas europaea ATCC 19718]
 gi|30138278|emb|CAD84286.1| Acriflavin resistance protein:Heavy metal efflux pump CzcA
           [Nitrosomonas europaea ATCC 19718]
          Length = 1034

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 59/523 (11%), Positives = 149/523 (28%), Gaps = 50/523 (9%)

Query: 10  LYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDF---- 65
           L  ++  + L+    +   +  +D FP                 +++ +++  +      
Sbjct: 15  LVIVVLTLILMGFGLHAAQRLSVDAFPDV---------------TNIQVQIATEAVGRSP 59

Query: 66  --VNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVN 123
             +   + +  +   + L          +   + ITL F D          V   L    
Sbjct: 60  EEIERLVTVPLEIAMTGLPGLEEMRSLNKSGLSIITLVFTDETDVYFARQLVMERLLEAA 119

Query: 124 SKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVIS-----HAIEQSMEIIRQRIDQIGISE 178
           SK+       L   +T        + ++ +            E+ +         +    
Sbjct: 120 SKMPPGIIPRLGPVSTGLGEVYQYTIDHPNDGERALTVEELTERRIVQDWIVRPMLRSIP 179

Query: 179 STIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDG 238
              +       + Q     DP++LR    T  ++       N +  G +      +    
Sbjct: 180 GVAEINSQGGYVKQYHVLTDPNKLRHYDLTLNQVEKAVAENNANASGGILPTGSEQYLVR 239

Query: 239 NQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVL 298
              L+    +I  I L+              V +  +            ++         
Sbjct: 240 GVGLIRTLQDIGNIVLSEERGVPVFVRDIAEVKLGTEVRAGAVIKGGYTESASG------ 293

Query: 299 DGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGS 358
                        +                 +     +         +           +
Sbjct: 294 -----------IVLMVRGGNAKEIVERVKVKVAEINEQKLLPGGLQIVPYYDRTDLVDAA 342

Query: 359 DSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIA 418
                        LV++VLF+ +   +  L+   ++ +  +LT  +++  G +  L S+ 
Sbjct: 343 LWTVSKVLMEGIFLVIVVLFIFLGDVRSSLIVVATLVVTPLLTFMIMNHQGISANLMSLG 402

Query: 419 GIVLGIGLAVDSNILVNERIREENRKNQSVFCS----LDMGFSRAYSTIFDSNITALIAT 474
           G+ + IGL VDS ++V E +      + +   S    +        + +       ++  
Sbjct: 403 GLAIAIGLMVDSTVVVVENVFHRLGHSGNTQESRARTIIEAVGEVGTPVIFGICIIILVF 462

Query: 475 VVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI 514
           + L       G      A T+ +++ IS+  ++++   +  +I
Sbjct: 463 LPLMTLQGMEGKLFSPLAFTIAIALAISLIVSLTLSPVLCAYI 505



 Score = 65.1 bits (156), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 72/216 (33%), Gaps = 5/216 (2%)

Query: 608 FQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIR 667
           +         +VR              +  + ++      L  +   +      +     
Sbjct: 287 YTESASGIVLMVRGGNAKEIVERVKVKVAEINEQKLLPGGLQIVPYYDRTDLVDAALWTV 346

Query: 668 KGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVL 727
             ++   I  + ++++I        +L  + TL++    T       GI  NL ++  + 
Sbjct: 347 SKVLMEGIFLVIVVLFI-FLGDVRSSLIVVATLVVTPLLTFMIMNHQGISANLMSLGGLA 405

Query: 728 TLIGYSVNDKVVVYDRMRKNM-KLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPM 786
             IG  V+  VVV + +   +     T  S    I +++ E     ++      +  LP+
Sbjct: 406 IAIGLMVDSTVVVVENVFHRLGHSGNTQESRARTIIEAVGEVGTPVIFGICIIILVFLPL 465

Query: 787 AVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPI 819
               G     F   A  +A  + ++   S+ ++  +
Sbjct: 466 MTLQGMEGKLFSPLAFTIAIALAISLIVSLTLSPVL 501



 Score = 56.6 bits (134), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 82/231 (35%), Gaps = 11/231 (4%)

Query: 583  VLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKI 642
            + A   V + +      ++  G       + ++  +V    +  D       ++    K 
Sbjct: 784  LRAPDGVTVPLYTVANINIVDGPAQVSRENAKRRVVVGSNVEGRDLGGFVAEVQERIAKE 843

Query: 643  TEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLIL 702
             ++      +                 IV + I AI  L+++         L A+  L+L
Sbjct: 844  VKLPDGYFFEWGGQFENMERAMATLSIIVPITIFAIFFLLFMLFN---SLRLAALIILVL 900

Query: 703  DITKTLGFFALF--GIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
                  G F LF  G   ++ A    + L G +V + VV+   +R   KL    +S +D 
Sbjct: 901  PFASIGGVFGLFVTGEYLSVPASVGFIALWGIAVLNGVVLISYIR---KLRDEGVSVKDA 957

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIVVA 808
            + K   +     + T+  A + ++P       G  V    AI +  G++ +
Sbjct: 958  VIKGCEQRFRPVLMTATVAMLGLVPFLFATGPGSEVQRPLAIVVIGGLITS 1008


>gi|206970188|ref|ZP_03231141.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus AH1134]
 gi|206734765|gb|EDZ51934.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus AH1134]
          Length = 1038

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 66/683 (9%), Positives = 195/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPIVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKEALT 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                + + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQIAGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKETEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++ + +  +          ++   M       +      K +
Sbjct: 231 GNITTIKALKELKIPAIPSSPNGQGSQNAGAGAQTPQMNPAAMNGIPTVTLDEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 +  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKASDANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANGYKRILAWALNHKIITSSIAVLLLVGSLALVPVIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQNNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 88.2 bits (216), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 DEIADIKEVGKAESISRTNGKEAIGIQIVKASDANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 67.0 bits (161), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|157961603|ref|YP_001501637.1| acriflavin resistance protein [Shewanella pealeana ATCC 700345]
 gi|157846603|gb|ABV87102.1| acriflavin resistance protein [Shewanella pealeana ATCC 700345]
          Length = 1025

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 76/679 (11%), Positives = 194/679 (28%), Gaps = 57/679 (8%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
                 + +  I   GL  +         L+ FP       I           +  +   
Sbjct: 10  RPVTTTMFFVAILLFGLASS-----RLLPLEMFPGIDIPQVI---------VEVPYKGST 55

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
              V   +    +E  + +        S  Q   +I L     +     + +    +  V
Sbjct: 56  PAEVERDITNVLEESLATMGGIEELRSSSSQNGAEIDLRMKWGQNVATKSLEAREKIDAV 115

Query: 123 NSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQ 182
              L  D ++  +   +  ++ ++  + + D+ +S A +      +Q    +   E   Q
Sbjct: 116 RHLLPKDVERVFIRQFSTADMPVLNLRISSDRELSSAFDLLD---KQLKKPLERVEGVSQ 172

Query: 183 RLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYL 242
                    Q+    +  +L     +   ++      N      +            +  
Sbjct: 173 VTLYGVEQKQIEIRINADKLSASNISVQSLNRRLQQENFVINAGVLKTDSRVYQVSPKGE 232

Query: 243 VEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRV 302
             +  +I+ + L                        A         N+   L   LDGR 
Sbjct: 233 FRNLDDITALVL------------------------APGITLGDIANVSFSLPERLDGRH 268

Query: 303 LTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEE-RNVGADLGSDSI 361
           L            ++  +     +    +    +  S    + +            S   
Sbjct: 269 LDQNYAVGLDVFKESGANLVDVSQRVMKVIDEAKRDSQFEGIKLFVMEDQAYGVTSSLRD 328

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
                 I A L  +VL++ +   K  LV   S+ + + +TLA +  LG +L + S+ G++
Sbjct: 329 LLTAGLIGALLSFVVLYLFLRDLKMTLVIVSSVPIAICMTLAAMYFLGYSLNILSMMGLL 388

Query: 422 LGIGLAVDSNILVNERIREENRKNQS------------VFCSLDMGFSRAYSTIFDSNIT 469
           L +G+ +D+ ++V E + ++ +   +               ++  G  +    +    +T
Sbjct: 389 LAVGMLIDNAVVVTESVLQQKQAQIADGSVQEVGVAKINSSAILRGVDKVSLAVLAGTLT 448

Query: 470 ALIATVVLFFFGGGAVRGFAITMGLSILISMFTAISIVRAMMIFI---IRYKKMKSIDIN 526
             I  +   F     +  F   + ++I IS+  ++ + + ++  +   + + + K+   +
Sbjct: 449 TAIVFLPNIFGVKVELTIFLEHVAIAICISLAASLLVAKTLLPLMLSRMSFSQKKAPKKS 508

Query: 527 PLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
            L   +       +   R       + +  +   + ++     +   + +  I   V   
Sbjct: 509 QLQARYQTSLNWILAHPRISGVLAIVILASTALPLSMVKQDQSDGEGNNRLYINYQVEGR 568

Query: 587 RPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV 646
             +D++          +     +                   + +      +K     I 
Sbjct: 569 HSLDVTEAMITRMETYLYANKDEFQIDSVYSYFAADRGQSTLILKEDTEVDMKALKKTIR 628

Query: 647 PLSTIQNTEIVGPKISREL 665
                            E 
Sbjct: 629 EGFPKFAIAKPQFGWGGEN 647



 Score = 76.7 bits (186), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 88/257 (34%), Gaps = 14/257 (5%)

Query: 582  GVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKK 641
             +  +  V      + +E L   D            +     +     AQ ++ ++++  
Sbjct: 758  VIRIDNRVYTLDSLAKIEILPRFDTIRHYDRQTALSIGANLDELTTEEAQDKITQVMENI 817

Query: 642  ITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITTL 700
                    +++       +    +    I+ +      + I +   F+        IT++
Sbjct: 818  NFPAGYGYSLRGGFQKQDEDEAVMATNMILAI----AMIYIVMAALFESLLLPTAIITSI 873

Query: 701  ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDL 760
            +  IT         G   ++ A+  +L L+G  VN+ +V+ D++ +              
Sbjct: 874  LFSITGVFWALLFTGTPMSIMAMIGILILMGIVVNNGIVLVDQINQLSPELDKLSDTISA 933

Query: 761  IDKSINETLGRSVYTSMAAFISVLPMAV------WGGSVIGSFAIPMAFGIVVAASSSIF 814
            +       L   + T     + ++P+A+       GG      AI +  G+  +  +S++
Sbjct: 934  VCY---TRLRPVLMTVGTTVLGLVPLAMGDTQLGGGGPSYSPMAIAIIGGLTFSTVTSLY 990

Query: 815  IAAPILLFIYDWRAKNA 831
            +       +Y  R ++A
Sbjct: 991  LVPLCYQALYRMRHRSA 1007



 Score = 65.9 bits (158), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 90/215 (41%), Gaps = 14/215 (6%)

Query: 622 QYQPGDSVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAML 681
                       + E  +    E + L  +++         R+L+  G++G ++S   ++
Sbjct: 286 NLVDVSQRVMKVIDEAKRDSQFEGIKLFVMEDQAYGVTSSLRDLLTAGLIGALLSF--VV 343

Query: 682 IYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY 741
           +Y+++R      L  ++++ + I  TL      G   N+ ++  +L  +G  +++ VVV 
Sbjct: 344 LYLFLR-DLKMTLVIVSSVPIAICMTLAAMYFLGYSLNILSMMGLLLAVGMLIDNAVVVT 402

Query: 742 DRMRKNMKLYTTSISFRD---------LIDKSINETLGRSVYTSMAAFISVLPMAVWGGS 792
           + + +  +      S ++          I + +++     +  ++   I  LP  ++G  
Sbjct: 403 ESVLQQKQAQIADGSVQEVGVAKINSSAILRGVDKVSLAVLAGTLTTAIVFLP-NIFGVK 461

Query: 793 V-IGSFAIPMAFGIVVAASSSIFIAAPILLFIYDW 826
           V +  F   +A  I ++ ++S+ +A  +L  +   
Sbjct: 462 VELTIFLEHVAIAICISLAASLLVAKTLLPLMLSR 496


>gi|149920121|ref|ZP_01908594.1| acriflavin resistance protein [Plesiocystis pacifica SIR-1]
 gi|149819064|gb|EDM78501.1| acriflavin resistance protein [Plesiocystis pacifica SIR-1]
          Length = 1123

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 72/708 (10%), Positives = 180/708 (25%), Gaps = 53/708 (7%)

Query: 3   NNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVDE 62
               + +L   +  +G +      L     +                      + L    
Sbjct: 13  RPVTVGMLLVAVFLLGTIALAKLPLAFLPAESAQRIS--------------IRVNLTRTS 58

Query: 63  DDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGV 122
            + +   +    +E  + ++       S      ++ L F      +    +V   +   
Sbjct: 59  PEILERDVIRPLEESIAGVRDLEQMRVSSGSWGVRMRLKFRPGTDIDARKLEVRERVDRT 118

Query: 123 NSKLNVDPKKNLLVTTTEKEI-SIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              L    +   L +++      ++  +   ++ +  A E    I R+ +  I   E   
Sbjct: 119 RPDLPDTIQNIDLSSSSGAADEPVMQLRIASNEPLDGAYEL---IDRRVVRAIERIEGVA 175

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +         +L    D    R       ++          +               +  
Sbjct: 176 RVELDGVEPRELEVAVDLDAARGYGVDLDQVGGVVRQSQRGRSLGTLRRSSRDAGVRSPG 235

Query: 242 LVEDK------VEISGIHLNGATANFDPKTHKPVVDISFDEMG----------------A 279
                          G       A     T    VD    + G                A
Sbjct: 236 APPKAEYFADLPVARGAVGRSQAAATADTTEAAAVDTELLDAGDAVAVVSNASTGDELNA 295

Query: 280 RRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGS 339
                     +         G  L             A  S              LR   
Sbjct: 296 DFARLGELARVSIHPKEKRRGSRLNGRPAINLDVFADAGASPVEVSARVRETVDELRRDP 355

Query: 340 LPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLV-LIVLFMIVLYGKWGLVADFSIFLNV 398
               +++    + G  +           I  GL+ ++VLF  +   +  L A   I L+V
Sbjct: 356 ALGGVDVAVFNDQGEVILDTLGDLRDTGIYGGLIGVVVLFGFLHRWRTTLTAAVCIPLSV 415

Query: 399 ILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSR 458
           +    +L L G+ L    +  +VL +G+ +D+ +++ E I++  ++    F +   G   
Sbjct: 416 LAACGVLFLRGSELNCIVLLALVLCVGMLIDNAVVIVESIQQRLQRGDPPFTAALEGARE 475

Query: 459 AYSTIFDSNITALIATVVLFFFGGG-----AVRGFAITMGLSILISMFTAISIVRAMM-- 511
                  S ++++I  + +            ++    T   +++ S+  +   V  +M  
Sbjct: 476 VGLATVASTMSSVIVFLPMIVGQSPGDMYTYMKPLGSTFVTALVASLLVSQLAVPLLMIL 535

Query: 512 ---IFIIRYKKMKSIDINPLSRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHG 568
               ++   K  +  +                 F   R   +     F    +     H 
Sbjct: 536 RRPSWLGGPKDDEDGEGTETETETDSATSTPRGFRPTRNVLLEPVAAFYGRLVGWTIRHP 595

Query: 569 LNYGIDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGD- 627
                             + +++ +            + F      ++ +  L+    + 
Sbjct: 596 RMTLAVGLCLCASAYYPAQNMNIDMGMDERMIAMPIRLEFTGSRDYRDVITGLEAVEDEL 655

Query: 628 -SVAQTRVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVI 674
                   +E +  +  +            +  +      ++G+   +
Sbjct: 656 LPRKDELGIETLTCRYRDWGGTCDAYPANDIESEAQMSDFKQGLQASL 703



 Score = 72.4 bits (175), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 61/160 (38%), Gaps = 9/160 (5%)

Query: 671 VGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLI 730
            G+    I +++      +W   L A   + L +    G   L G E N   + A++  +
Sbjct: 382 TGIYGGLIGVVVLFGFLHRWRTTLTAAVCIPLSVLAACGVLFLRGSELNCIVLLALVLCV 441

Query: 731 GYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV-- 788
           G  +++ VV+ + +    +             +   E    +V ++M++ I  LPM V  
Sbjct: 442 GMLIDNAVVIVESI---QQRLQRGDPPFTAALEGAREVGLATVASTMSSVIVFLPMIVGQ 498

Query: 789 WGGSV---IGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
             G +   +          +V +   S  +A P+L+ +  
Sbjct: 499 SPGDMYTYMKPLGSTFVTALVASLLVSQ-LAVPLLMILRR 537



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 97/268 (36%), Gaps = 23/268 (8%)

Query: 573  IDFKGGIQLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQT 632
                      V  +   D+ + RS            Q  D +    +R+++   D  A  
Sbjct: 859  PAPTDTGVTEVPLSSIADIELERS--------PWWVQRVDRQTEVRLRVRFFGTDRGANQ 910

Query: 633  RVLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIY--IWIRFKW 690
              +E  ++        S  Q     G +   E      + + +    +L+Y  +   F+ 
Sbjct: 911  AAVEAAREGFALPAGYSIGQ-----GTRWGMENDEMLQLAINLGLCLILVYAVMASLFES 965

Query: 691  YFALGAITTL-ILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMK 749
            +   GAI    +L            G  F++ A+  +  L+G  VN+ +++ D++    +
Sbjct: 966  FLQPGAILATGLLGCFGAPWAMWASGTTFDIVAMIGLFILVGIIVNNGIMLVDKV---TQ 1022

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV----WGGSVIGSFAIPMAFGI 805
            L    +   + + ++  + L   + T+      ++PM +      G    S AI +A G+
Sbjct: 1023 LRGDGLGRDEALAQAGKDRLRPVLMTAATTIFGLVPMLLHHPTLAGIYYHSIAIIIAAGL 1082

Query: 806  VVAASSSIFIAAPILLFIYDWRAKNARI 833
              +   ++       + + ++  ++ RI
Sbjct: 1083 ATSTVMTLVFLPSAYVLVENFSLESQRI 1110


>gi|30265455|ref|NP_847832.1| AcrB/AcrD/AcrF family transporter [Bacillus anthracis str. Ames]
 gi|47531017|ref|YP_022366.1| AcrB/AcrD/AcrF family transporter [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49188274|ref|YP_031527.1| AcrB/AcrD/AcrF family transporter [Bacillus anthracis str. Sterne]
 gi|65317417|ref|ZP_00390376.1| COG0841: Cation/multidrug efflux pump [Bacillus anthracis str.
           A2012]
 gi|118480465|ref|YP_897616.1| AcrB/AcrD/AcrF family transporter [Bacillus thuringiensis str. Al
           Hakam]
 gi|165872510|ref|ZP_02217143.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0488]
 gi|167641451|ref|ZP_02399701.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0193]
 gi|170708638|ref|ZP_02899077.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0389]
 gi|177651932|ref|ZP_02934515.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0174]
 gi|190568935|ref|ZP_03021837.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036078|ref|ZP_03103478.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus W]
 gi|196045494|ref|ZP_03112725.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus 03BB108]
 gi|227818205|ref|YP_002818214.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. CDC
           684]
 gi|229601928|ref|YP_002869645.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0248]
 gi|254724094|ref|ZP_05185879.1| transporter, AcrB/AcrD/AcrF family protein [Bacillus anthracis str.
           A1055]
 gi|254735556|ref|ZP_05193263.1| transporter, AcrB/AcrD/AcrF family protein [Bacillus anthracis str.
           Western North America USA6153]
 gi|254755910|ref|ZP_05207942.1| transporter, AcrB/AcrD/AcrF family protein [Bacillus anthracis str.
           Vollum]
 gi|254761622|ref|ZP_05213642.1| transporter, AcrB/AcrD/AcrF family protein [Bacillus anthracis str.
           Australia 94]
 gi|301056901|ref|YP_003795112.1| AcrB/AcrD/AcrF family transporter [Bacillus anthracis CI]
 gi|30260133|gb|AAP29318.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. Ames]
 gi|47506165|gb|AAT34841.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49182201|gb|AAT57577.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. Sterne]
 gi|118419690|gb|ABK88109.1| transporter, AcrB/AcrD/AcrF family [Bacillus thuringiensis str. Al
           Hakam]
 gi|164711733|gb|EDR17277.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0488]
 gi|167510626|gb|EDR86022.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0193]
 gi|170126420|gb|EDS95308.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0389]
 gi|172082636|gb|EDT67700.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0174]
 gi|190560002|gb|EDV13985.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991245|gb|EDX55213.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus W]
 gi|196023701|gb|EDX62377.1| transporter, AcrB/AcrD/AcrF family [Bacillus cereus 03BB108]
 gi|227004302|gb|ACP14045.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. CDC
           684]
 gi|229266336|gb|ACQ47973.1| transporter, AcrB/AcrD/AcrF family [Bacillus anthracis str. A0248]
 gi|300379070|gb|ADK07974.1| AcrB/AcrD/AcrF family transporter [Bacillus cereus biovar anthracis
           str. CI]
          Length = 1038

 Score =  120 bits (300), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 68/683 (9%), Positives = 196/683 (28%), Gaps = 33/683 (4%)

Query: 1   MRNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEV 60
           ++N   + +L  ++   G+   L        L+  P                    V   
Sbjct: 9   LKNKFAVWLLTIIVTIAGIYSGL-----NMKLETIPDITTPVVTVT---------TVYPG 54

Query: 61  DEDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQ 120
              + V   +    +E    L    +   S  Q  + I + +   +  E    ++   L 
Sbjct: 55  ATPEEVADKVSKPMEEQLQNLSGVNVVSSSSFQNASSIQVEYDFDKNMEKAETEIKDALA 114

Query: 121 GVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISEST 180
            V   L    K   +         ++                +  + +  +  +   +  
Sbjct: 115 NVK--LPEGVKDPKVSRVNFNAFPVISLSVASKN--ESLATLTENVEKNVVPGLKGLDGV 170

Query: 181 IQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQ 240
                S + + ++       ++++L  +   +       + S    ++  +    S    
Sbjct: 171 ASVQISGQQVDEVQLVFKKDKMKELGLSEDTVKNVIKGSDVSLPLGLYTFKDTEKSVVVD 230

Query: 241 YLVEDKVEISGIHLNGATANFDPKTHK------PVVDISFDEMGARRFFEVTRDNIGKPL 294
             +     +  + +    ++   +  +       +  ++   M       ++     K +
Sbjct: 231 GNITTMKALKELKIPAVPSSASSQGSQTAGAGAQMPQMNPAAMNGIPTVTLSEIADIKEV 290

Query: 295 AVVLDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGA 354
                                 A  +    +         L          I        
Sbjct: 291 GKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKY-KDLEIISTFDQGAP 349

Query: 355 DLGSDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL 414
              S           A   ++++ + +   +  L++  SI L++++ + ++  +  TL +
Sbjct: 350 IEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIKQMDITLNI 409

Query: 415 PSIAGIVLGIGLAVDSNILVNERIREEN---RKNQSVFCSLDMGFSRAYSTIFDSNITAL 471
            ++  + + IG  VD +I+V E I        +       +       +  I  S I  +
Sbjct: 410 MTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPIMSSTIVTI 469

Query: 472 IATVVLFF---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPL 528
              + L       G     FA+T+  ++L S+  A++IV  +   + + + M+  +++  
Sbjct: 470 AVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESMREKEVHHE 529

Query: 529 SRFFLIPDCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRP 588
            +   + +        A    +  S +  +  +  L    +          +  ++A   
Sbjct: 530 EKPSKLANIYKRILAWALNHKIITSSIAVLLLVGSLALVPIIGVSFLPSEEEKMIIATYN 589

Query: 589 VDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPL 648
            +      ++E +     + ++F   K+         G++             +      
Sbjct: 590 PEPGQTLEDVEKIATK--AEKHFQDNKDVKTIQFSLGGENPMSPGQSNQAMFFVQYDNDT 647

Query: 649 STIQNTEIVGPKISRELIRKGIV 671
              +  +    K  +++  KG  
Sbjct: 648 KNFEKEKEQVVKDLQKMSGKGEW 670



 Score = 87.4 bits (214), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 95/243 (39%), Gaps = 3/243 (1%)

Query: 593 VVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIVPLSTIQ 652
              ++++ +   +   +    E   +  ++    ++V     ++   K++ +      I 
Sbjct: 282 SEIADIKEVGKAESISRTNGKEAIGIQIVKAADANTVDVVNAVKDKVKELEKKYKDLEII 341

Query: 653 NTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFA 712
           +T   G  I + +       +  +  A++I +         L ++ ++ L +   +    
Sbjct: 342 STFDQGAPIEKSVETMLSKAIFGAIFAIVIIMLFLRNIRTTLISVVSIPLSLLIAVLVIK 401

Query: 713 LFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRS 772
              I  N+  + A+   IG  V+D +VV + + + M L    +  +DLI ++  E     
Sbjct: 402 QMDITLNIMTLGAMTVAIGRVVDDSIVVIENIYRRMSLSEEKLRGKDLIREATKEMFIPI 461

Query: 773 VYTSMAAFISVLPMAV---WGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYDWRAK 829
           + +++      LP+ +     G +   FA+ + F ++ +   ++ I   +   ++   + 
Sbjct: 462 MSSTIVTIAVFLPLGLVKGMIGEMFLPFALTIVFALLASLLVAVTIVPMLAHSLFKKESM 521

Query: 830 NAR 832
             +
Sbjct: 522 REK 524



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/225 (16%), Positives = 86/225 (38%), Gaps = 8/225 (3%)

Query: 584  LANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKIT 643
                P+   V   ++ +++ G+ S      +      +  +            + K+   
Sbjct: 790  KITTPLGNEVAVKDVMTVKEGETSNTVKHRDGRVYAEVSAKLTSDDVSKASAAVQKEVDK 849

Query: 644  EIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAIT-TLIL 702
              +P     +   V   I     + G+  ++ +   +   + + F    A  AI  +L  
Sbjct: 850  MDLPSGVDVSMGGVTKDIEESFKQLGL-AMLAAIAIVYFVLVVTFGGALAPFAILFSLPF 908

Query: 703  DITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLID 762
             I   L    + G   +++A+   L LIG  V + +V+ DR+   +      +S R+ + 
Sbjct: 909  TIIGALVALLISGETLSVSAMIGALMLIGIVVTNAIVLIDRV---IHKENEGLSTREALL 965

Query: 763  KSINETLGRSVYTSMAAFISVLPMAV-WGGSVI--GSFAIPMAFG 804
            ++    L   + T++A   +++P+A+ + GS +      + +  G
Sbjct: 966  EAGATRLRPILMTAIATIGALIPLALGFEGSGLISKGLGVTVIGG 1010


>gi|75677309|ref|YP_319730.1| heavy metal efflux pump CzcA [Nitrobacter winogradskyi Nb-255]
 gi|74422179|gb|ABA06378.1| heavy metal efflux pump CzcA [Nitrobacter winogradskyi Nb-255]
          Length = 1058

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 71/591 (12%), Positives = 167/591 (28%), Gaps = 42/591 (7%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           RN   + +        GL       L    LD  P       I          +      
Sbjct: 11  RNLVLVFVGTIFAVAAGLYA-----LKTLPLDAIPDLSDVQVI---------VYTNYPGQ 56

Query: 62  EDDFVNGFLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQG 121
               V   +          + K  +         + + + F D         +V  +L  
Sbjct: 57  APQVVEDQVTYPLTTSMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDPYWARSRVLEYLNA 116

Query: 122 VNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTI 181
              +L       L    T        +    +  ++        +IR        ++   
Sbjct: 117 AAQRLPAGVTPTLGPDATGVGWVYQYAVVAKEMTLAELRSLQDWVIRF---GASKADGVA 173

Query: 182 QRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQY 241
           +       + Q     DP+RLR L     ++       N    G    +         + 
Sbjct: 174 EVASVGGFVKQYSIVVDPNRLRALGIPLDRVREAVKASNADVGGRTVELSEFEFMVRGRG 233

Query: 242 LVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGR 301
            +    +I  + L               V+I   E           +             
Sbjct: 234 YIRSAADIENVVLKTDRGVSLRVRDVARVEIEPGERRGITELNGESE------------- 280

Query: 302 VLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSI 361
                 +   I   +   +    IE      A + +        +           +   
Sbjct: 281 ------VASGIVLQRFGANALTVIENVKARLAEIASSLPEGAEIVPVYDRSELIGRAIET 334

Query: 362 YKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIV 421
            KGT    + +V +V  + +L+ +  LVA   + + + +  A +  +G    + S+ GI 
Sbjct: 335 LKGTLIEESIIVALVCVVFLLHLRSALVAILMLPVGIFIAFAAMKAIGLGSNIMSLGGIA 394

Query: 422 LGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAY---STIFDSNITALIATVVLF 478
           + +G  +D+ I++ E   +   +       +++    A      +F S +   ++ + +F
Sbjct: 395 IAVGAMIDAAIVMIENAHKHLERAPPDKPRVEILIEAASQVGPALFFSLLVITVSFLPIF 454

Query: 479 F---FGGGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIP 535
                 G      A T   ++  +   ++++V A+M+  +R + +             + 
Sbjct: 455 TLESQEGRMFGPLAFTKTFAMAAAALLSVTLVPALMVVFVRGRIIPEHRNPINRFLIWVY 514

Query: 536 DCIAIQFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
             +    ++A+   + I+++    ++      G  +      G  + +   
Sbjct: 515 RPVIRGVLKAKTLTILIALIVLGVTVWPARQLGSEFMPSIDEGALMYMPTT 565



 Score = 50.5 bits (118), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/152 (16%), Positives = 49/152 (32%), Gaps = 19/152 (12%)

Query: 697  ITTLILDITKTLGF--FALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRM---------- 744
            I  L L      G       G   ++      + L G +    V++   +          
Sbjct: 889  IVMLSLPFALVGGIWLMWWLGFNMSVAVAVGFIALAGVAAETGVIML--IYLEQAMAELK 946

Query: 745  --RKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAI 799
              R+      T     + I     E +   + T +A    ++P+      G  V+   A+
Sbjct: 947  VEREAEGRPFTRTDLYEAIMLGAVERVRPKMMTVIAITAGLIPILWSTGTGSEVMQRIAV 1006

Query: 800  PMAFGIVVAASSSIFIAAPILLFIYDWRAKNA 831
            PM  G+V +   ++ +   +   I  WR   +
Sbjct: 1007 PMIGGMVSSTVLTLVVIPAVYALIKGWRLPRS 1038



 Score = 44.3 bits (102), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 58/165 (35%), Gaps = 27/165 (16%)

Query: 666 IRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAA 725
           +R  +V ++   + + I+I                              G+  N+ ++  
Sbjct: 357 LRSALVAIL--MLPVGIFIAF----------------------AAMKAIGLGSNIMSLGG 392

Query: 726 VLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLP 785
           +   +G  ++  +V+ +   K+++         +++ ++ ++      ++ +   +S LP
Sbjct: 393 IAIAVGAMIDAAIVMIENAHKHLERAPPDKPRVEILIEAASQVGPALFFSLLVITVSFLP 452

Query: 786 MAVWGGSVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
           +          F   A    F +  AA  S+ +   +++     R
Sbjct: 453 IFTLESQEGRMFGPLAFTKTFAMAAAALLSVTLVPALMVVFVRGR 497


>gi|257452888|ref|ZP_05618187.1| protein translocase subunit secD [Fusobacterium sp. 3_1_5R]
 gi|257466747|ref|ZP_05631058.1| protein translocase subunit secD [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917896|ref|ZP_07914136.1| translocase subunit secD [Fusobacterium gonidiaformans ATCC 25563]
 gi|317059430|ref|ZP_07923915.1| translocase subunit secD [Fusobacterium sp. 3_1_5R]
 gi|313685106|gb|EFS21941.1| translocase subunit secD [Fusobacterium sp. 3_1_5R]
 gi|313691771|gb|EFS28606.1| translocase subunit secD [Fusobacterium gonidiaformans ATCC 25563]
          Length = 411

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 134/389 (34%), Positives = 218/389 (56%), Gaps = 22/389 (5%)

Query: 143 ISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHRILIQLPGEQDPSRL 202
           + +         +   A+ + +E++ +RI+ +G++ES++Q  G +R++I+LPG  +    
Sbjct: 40  VVLEAVPEEGQTLDKDAMGRLIEVLDRRINGLGVAESSVQMAGDNRVIIELPGVDNTEDA 99

Query: 203 RQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVEISGIHLNGATANFD 262
            +++G TA + F     +                         +  ++G  L  A  ++ 
Sbjct: 100 VKMVGKTALLEFKLKQED---------------------GSLGETLLTGGSLKKADVSY- 137

Query: 263 PKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVINQAIPSGKAQISGN 322
               +P +       GAR F ++TR+NIGK LA+ LDG V TAPVIN  IPSG   I+GN
Sbjct: 138 DNLGRPQIQFEMTPEGAREFAKITRENIGKQLAITLDGEVQTAPVINGEIPSGSGVITGN 197

Query: 323 FTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAIVAGLVLIVLFMIVL 382
           +T+E A   A +L AG+LP+K  I E R VGA LG +SI +   A +  +VLI  FMI+ 
Sbjct: 198 YTVEEAKATATLLNAGALPVKAEIAEIRTVGASLGDESIAQSKQAGMLAIVLIWAFMILF 257

Query: 383 YGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAVDSNILVNERIREEN 442
           Y   G+VAD ++     +T  LL+ + ATLTLP IAG++L  G+AVD+N+++ ERI+EE 
Sbjct: 258 YRLPGIVADIALVFFGFITFGLLNFIDATLTLPGIAGLILSAGMAVDANVIIFERIKEEL 317

Query: 443 RKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGAVRGFAITMGLSILISMFT 502
           +   ++  ++  GF++ +  IFDSNIT LI T++LF FG G V+GFA+T+ +  + SM T
Sbjct: 318 QFGNTIRNAIASGFNKGFVAIFDSNITTLIITIILFTFGTGPVKGFAVTLTIGTIGSMLT 377

Query: 503 AISIVRAMMIFIIRYKKMKSIDINPLSRF 531
           AI+I + +++  +         +  +   
Sbjct: 378 AITITKVLLLNFVEIFGFTKPSLFGIKGK 406



 Score =  101 bits (251), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 25/168 (14%), Positives = 71/168 (42%), Gaps = 4/168 (2%)

Query: 658 GPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIE 717
           G  +  E I +     +++ + +  ++ + ++    + A   L+     T G        
Sbjct: 228 GASLGDESIAQSKQAGMLAIVLIWAFMILFYRLP-GIVADIALVFFGFITFGLLNFIDAT 286

Query: 718 FNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSM 777
             L  +A ++   G +V+  V++++R+++ ++      + R+ I    N+       +++
Sbjct: 287 LTLPGIAGLILSAGMAVDANVIIFERIKEELQF---GNTIRNAIASGFNKGFVAIFDSNI 343

Query: 778 AAFISVLPMAVWGGSVIGSFAIPMAFGIVVAASSSIFIAAPILLFIYD 825
              I  + +  +G   +  FA+ +  G + +  ++I I   +LL   +
Sbjct: 344 TTLIITIILFTFGTGPVKGFAVTLTIGTIGSMLTAITITKVLLLNFVE 391



 Score = 66.3 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 41  KNRISLGLDLRGGSHLVLEVDEDD---FVNGFLQMYSDELRSFLKKEGIGVFSMR-QIQN 96
                LGLDL+GG ++VLE   ++        +    + L   +   G+   S++    N
Sbjct: 25  SKPTKLGLDLKGGVYVVLEAVPEEGQTLDKDAMGRLIEVLDRRINGLGVAESSVQMAGDN 84

Query: 97  KITLSFADSRFKENIADKVTLFLQGVN 123
           ++ +        E+    V        
Sbjct: 85  RVIIELPGVDNTEDAVKMVGKTALLEF 111


>gi|316935398|ref|YP_004110380.1| CzcA family heavy metal efflux pump [Rhodopseudomonas palustris
           DX-1]
 gi|315603112|gb|ADU45647.1| heavy metal efflux pump, CzcA family [Rhodopseudomonas palustris
           DX-1]
          Length = 1052

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 76/584 (13%), Positives = 167/584 (28%), Gaps = 40/584 (6%)

Query: 12  SMICCIGLLIALPNFLPQS---MLDRFPSAMPKNRISLGLDLRGGSHLVLEVDEDDFVNG 68
            ++   G   A    L       LD  P            D +   +          +  
Sbjct: 13  LLLVLFGTGFAAAAGLYALLHLPLDAIPDLS---------DTQVVVYTEYPGQAPQVIED 63

Query: 69  FLQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTLFLQGVNSKLNV 128
            +          + K  +         + + + F D         +V  FL G  S++  
Sbjct: 64  QVTYPLTTAMLTVPKSKVVRGFSFFGVSFVYVIFEDGTDIYWARSRVLEFLNGAASRMPA 123

Query: 129 DPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGISESTIQRLGSHR 188
               ++    T        +  + +  ++                +  +E   +      
Sbjct: 124 GVAPSIGPDATGVGWVYQYAVMSKELNLADTRSIQD---WNLRFALAKAEGVAEVASIGG 180

Query: 189 ILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSDGNQYLVEDKVE 248
            + Q     DP R+R    T A+M       N    G    +         +  ++D  +
Sbjct: 181 FVKQYNVVLDPQRMRDRGITMARMREAIRASNADVGGRTVELSEFEYVIRGKGYIKDIND 240

Query: 249 ISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVVLDGRVLTAPVI 308
           +                      +     G     +        P        +     +
Sbjct: 241 LG-------------------NIVLKASGGTPVLLKDVARVELGPDERRGIAELNGEGEV 281

Query: 309 NQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLGSDSIYKGTCAI 368
              I   +  ++    IE        + +        +           +    K T   
Sbjct: 282 ASGIVLQRFGVNALDVIEHVKKRFQEIASSLPKSVEIVPVYDRSTLIYSAIDTLKHTLLE 341

Query: 369 VAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSIAGIVLGIGLAV 428
            + +V  V  + +L+ +  LVA   + + V++  A + LLG    + S+ GI + IG  V
Sbjct: 342 ESLVVAAVCIIFLLHVRSALVAILMLPVGVLMAFAAMKLLGLGSNIMSLGGIAIAIGAMV 401

Query: 429 DSNILVNERIREE---NRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFF---FGG 482
           D+ I++ E   +        +S    L    S     +F S +   ++ + +F      G
Sbjct: 402 DAAIVMIENAHKHLERAEPGKSRVAILIEAASEVGPALFFSLLIITVSFLPIFTLESQEG 461

Query: 483 GAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSIDINPLSRFFLIPDCIAIQF 542
                 A T   ++  +   ++++V A+M+  +R + +             I   +    
Sbjct: 462 RLFGPLAFTKTFAMAAAALLSVTLVPALMVIFVRGRIVPEHRNIINRALIWIYRPVIRGV 521

Query: 543 MRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLAN 586
           +RA+   + ++++    SI      G  +      G  L +   
Sbjct: 522 LRAKTLVIVLALVVLGVSIWPARQLGTEFMPSLDEGTLLYMPTT 565



 Score = 66.6 bits (160), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 66/159 (41%), Gaps = 7/159 (4%)

Query: 672 GVIISAIAMLIYIWIRFKWYFALGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIG 731
            ++++A+ ++  + +R     AL AI  L + +        L G+  N+ ++  +   IG
Sbjct: 343 SLVVAAVCIIFLLHVR----SALVAILMLPVGVLMAFAAMKLLGLGSNIMSLGGIAIAIG 398

Query: 732 YSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWGG 791
             V+  +V+ +   K+++      S   ++ ++ +E      ++ +   +S LP+     
Sbjct: 399 AMVDAAIVMIENAHKHLERAEPGKSRVAILIEAASEVGPALFFSLLIITVSFLPIFTLES 458

Query: 792 SVIGSF---AIPMAFGIVVAASSSIFIAAPILLFIYDWR 827
                F   A    F +  AA  S+ +   +++     R
Sbjct: 459 QEGRLFGPLAFTKTFAMAAAALLSVTLVPALMVIFVRGR 497



 Score = 53.5 bits (126), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 82/261 (31%), Gaps = 16/261 (6%)

Query: 580  QLGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVK 639
             + + A   V L  V +   +     I  +N        V ++ +            +  
Sbjct: 777  LVSLPAGGAVPLGEVATVKPARGPTAIRTENGQLATYIYVDIRDRDLGGYVADAKQAVQA 836

Query: 640  KKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFALGAITT 699
                      T         + +  L  K +V + ++ I +L+Y+  R      L  + +
Sbjct: 837  GVSFPPGTYVTWSGQYEYLERATARL--KVVVPLTLAIIFLLLYLNFR-SLTETLIVMLS 893

Query: 700  LILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVY----------DRMRKNMK 749
            L   +   L      G + ++      + L G +    VV+                   
Sbjct: 894  LPFALVGGLWLMWGLGFDLSVAVAVGFIALAGVAAETGVVMLIYLDHALAAAKAKCAAEG 953

Query: 750  LYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVW---GGSVIGSFAIPMAFGIV 806
               T    +  I +   E +   + T +A    +LP+      G  ++   A+PM  G+V
Sbjct: 954  RSLTQRDLQGAIMEGAVERVRPKMMTVVAIMAGLLPILWSSGTGSEIMQRIAVPMIGGMV 1013

Query: 807  VAASSSIFIAAPILLFIYDWR 827
             +   ++ +   I   +  ++
Sbjct: 1014 SSTLLTLIVIPAIYGLVEGFK 1034


>gi|319775172|ref|YP_004137660.1| multidrug efflux system protein [Haemophilus influenzae F3047]
 gi|317449763|emb|CBY85970.1| multidrug efflux system protein [Haemophilus influenzae F3047]
          Length = 1024

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 61/529 (11%), Positives = 149/529 (28%), Gaps = 48/529 (9%)

Query: 2   RNNPWLVILYSMICCIGLLIALPNFLPQSMLDRFPSAMPKNRISLGLDLRGGSHLVLEVD 61
           R     V +  ++  +GL       + +  +  +P                   + +   
Sbjct: 15  RRPVLAVSISLLMIILGL-----QAISKLAVREYPKMTTTV-------------ITVSTA 56

Query: 62  EDDFVNGF----LQMYSDELRSFLKKEGIGVFSMRQIQNKITLSFADSRFKENIADKVTL 117
                       +    +E  +          +     + IT+    +         V  
Sbjct: 57  YPGADANLIQAFVTSKLEESIAQADNIDYMSSTSAPSSSTITIKMKLNTDPAGTLADVLA 116

Query: 118 FLQGVNSKLNVDPKKNLLVTTTEKEISIVLSQNNIDQVISHAIEQSMEIIRQRIDQIGIS 177
            +  V S L    +   + +++     I+       ++   + + +  I R    Q    
Sbjct: 117 KVNAVKSALPNGIEDPSVSSSSG-GSGIMYISFRSKKL--DSSQVTDYINRVVKPQFFTI 173

Query: 178 ESTIQRLGSHRILIQLPGEQDPSRLRQLLGTTAKMSFHKVLPNNSKKGFMFGVRFLRDSD 237
           E   +          L    DP ++     +   +       N           ++   +
Sbjct: 174 EGVAEVQVFGAAEYALRIWLDPQKMAAQNLSVPTVMSALSANNVQTAAGNDNGYYVSYRN 233

Query: 238 GNQYLVEDKVEISGIHLNGATANFDPKTHKPVVDISFDEMGARRFFEVTRDNIGKPLAVV 297
             +   +   ++S                    ++     G           +       
Sbjct: 234 KVETTTKSVEQLS--------------------NLIISSNGDDLVRLRDIATVELNKEND 273

Query: 298 LDGRVLTAPVINQAIPSGKAQISGNFTIETAGILAAMLRAGSLPIKLNIVEERNVGADLG 357
                           +  +  +     E    L   ++        + +      A   
Sbjct: 274 NSRATANGAESVVLAINPTSTANPLTVAEKIRPLYESIKTQLPDSMESDILYDRTIAINS 333

Query: 358 SDSIYKGTCAIVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTLPSI 417
           S      T      +VL+V+ M +   +  L+   +I +++I  L LL     ++ L ++
Sbjct: 334 SIHEVIKTIGEATLIVLVVILMFIGSFRAILIPILAIPISLIGVLMLLQSFNFSINLMTL 393

Query: 418 AGIVLGIGLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVL 477
             ++L IGL VD  I+V E I    +  ++ F +  +G       +    I  +     +
Sbjct: 394 LALILAIGLVVDDAIVVLENIDRHIKAGETPFRAAIIGTREIAVPVISMTIALIAVYSPM 453

Query: 478 FFFG---GGAVRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMKSI 523
              G   G   + FA+T+  ++ IS   A+++   M   +++     + 
Sbjct: 454 ALMGGITGTLFKEFALTLAGAVFISGVVALTLSPMMSSKLLKSNAKPTW 502



 Score = 62.0 bits (148), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 86/250 (34%), Gaps = 17/250 (6%)

Query: 581  LGVLANRPVDLSVVRSNLESLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKK 640
            L     + V LS V S     Q   +   +                   A   + +    
Sbjct: 770  LTASNGQSVPLSSVISMKLETQPTSLPRFSQLNSAEISAVPMPGISSGDAIAWLQQQAND 829

Query: 641  KITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFK-WYFALGAITT 699
             + +       ++      +    L    I+ V+I    + + + I+F+     +  + +
Sbjct: 830  NLPQ-GYTYDFKSEARQLVQEGNALTTTFILAVVI----IFLVLAIQFESIRDPMVIMIS 884

Query: 700  LILDI------TKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
            + L +         L FF++ G   N+ +   ++TL+G      +++ +  ++    Y  
Sbjct: 885  VPLAVSGALVSLNILSFFSIAGTTLNIYSQVGLITLVGLITKHGILMCEVAKEEQLNYGK 944

Query: 754  SISFRDLIDKSINETLGRSVYTSMAAFISVLP-MAVWGGSVIGSFAIPMAF--GIVVAAS 810
            +    + I  +    L   + T+ A    ++P +   G   +  F+I +    G+ +   
Sbjct: 945  TR--IEAITHAAKVRLRPILMTTAAMVAGLIPLLYATGAGAVSRFSIGIVIVAGLSIGTI 1002

Query: 811  SSIFIAAPIL 820
             ++F+   + 
Sbjct: 1003 FTLFVLPVVY 1012



 Score = 46.6 bits (108), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/200 (16%), Positives = 78/200 (39%), Gaps = 9/200 (4%)

Query: 634 VLEMVKKKITEIVPLSTIQNTEIVGPKISRELIRKGIVGVIISAIAMLIYIWIRFKWYFA 693
           + E +K ++ + +    + +  I       E+I+      +I  + +L++I     +   
Sbjct: 307 LYESIKTQLPDSMESDILYDRTIAINSSIHEVIKTIGEATLIVLVVILMFIG---SFRAI 363

Query: 694 LGAITTLILDITKTLGFFALFGIEFNLTAVAAVLTLIGYSVNDKVVVYDRMRKNMKLYTT 753
           L  I  + + +   L     F    NL  + A++  IG  V+D +VV + +    +    
Sbjct: 364 LIPILAIPISLIGVLMLLQSFNFSINLMTLLALILAIGLVVDDAIVVLENI---DRHIKA 420

Query: 754 SISFRDLIDKSINETLGRSVYTSMAAFISVLPMAVWG---GSVIGSFAIPMAFGIVVAAS 810
             +          E     +  ++A      PMA+ G   G++   FA+ +A  + ++  
Sbjct: 421 GETPFRAAIIGTREIAVPVISMTIALIAVYSPMALMGGITGTLFKEFALTLAGAVFISGV 480

Query: 811 SSIFIAAPILLFIYDWRAKN 830
            ++ ++  +   +    AK 
Sbjct: 481 VALTLSPMMSSKLLKSNAKP 500


>gi|240172088|ref|ZP_04750747.1| transmembrane transport protein MmpL11 [Mycobacterium kansasii ATCC
           12478]
          Length = 1009

 Score =  120 bits (300), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 72/521 (13%), Positives = 158/521 (30%), Gaps = 66/521 (12%)

Query: 368 IVAGLVLIVLFMIVLYGKWGLVADFSIFLNVILTLALLSLLGATLTL---PSIAGIVLGI 424
               ++LIVL  +        +        V++T+ L+ LL    T+    +    + GI
Sbjct: 184 WNLPIILIVLLAVFGSLAAAAIPLALGICTVVVTMGLVYLLSMHTTMSVFVTSTVSMFGI 243

Query: 425 GLAVDSNILVNERIREENRKNQSVFCSLDMGFSRAYSTIFDSNITALIATVVLFFFGGGA 484
            LAVD ++ +  R REE R  +    ++D   + +   +  S +T + +   ++     A
Sbjct: 244 ALAVDYSLFILMRFREELRTGRRPQEAVDAAMATSGLAVVLSGMTVIASLTGIYLINTPA 303

Query: 485 VRGFAITMGLSILISMFTAISIVRAMMIFIIRYKKMK----SIDINPLSRFFLIPDCIAI 540
           +R  A    L++ ++M T+ ++  A++    R    +         P S           
Sbjct: 304 LRSMATGAILAVAVAMLTSATLTPALLATFARAAAKRSALLHWSRRPESTQSRFWARWVG 363

Query: 541 QFMRARFWGVGISILFSICSICLLFTHGLNYGIDFKGGIQLGVLANRPVDLSVV-RSNLE 599
             MR  +     + L  +          L   +  +      + A        +    L 
Sbjct: 364 WVMRRPWITALSASLVLLLMAAPATQMVLGNSLLRQFDSSHEIRAGVSAAAQALGPGALG 423

Query: 600 SLQIGDISFQNFDGEKNFLVRLQYQPGDSVAQTRVLEMVKKKITEIV------------- 646
             Q+                 +            V  +   K                  
Sbjct: 424 PAQVLVTFPDGGASTPAHSQTIAAIRQQMTQAPDVASVAPPKFAADNRSALLSAVLSVDP 483

Query: 647 ------PLSTIQNTEIVGPKISRELIRKGIVGVI-----------------ISAIAMLIY 683
                        T + G      +   G   +I                 ++ IA ++ 
Sbjct: 484 EDMGARHTVDWMRTHLPGAADGARIDVGGPTALIKDFDDRVAATQPLVLAFVALIAFVML 543

Query: 684 IWIRFKWYFALGAITTLILDITKT---------------LGFFALFGIEFNLTAVAAVLT 728
           +      + AL  +   +L +                  LGF  L  I+  +  +  +  
Sbjct: 544 LVSVHSMFLALKGVLMTLLSVAAAYGSLVMVFQWGWAEKLGFPHLSSIDSTVPPL-VLAM 602

Query: 729 LIGYSVNDKVVVYDRMRKNMKLYTTSISFRDLIDKSINETLGRSVYTSMAAFISVLPMAV 788
             G S++ ++ +  R+R+    +  +   RD +   +  T  R++ ++    I+V     
Sbjct: 603 TFGLSMDYEIFLLTRIRE---RFLHTGQTRDAVAYGV-STSARTITSAALIMIAVFCGFA 658

Query: 789 W-GGSVIGSFAIPMAFGIVVA-ASSSIFIAAPILLFIYDWR 827
           + G  ++    +  A  I V      + +   ++     W 
Sbjct: 659 FAGMPLVAEIGVACAVAIAVDATIVRLILVPALMAMFSQWN 699


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.311    0.102    0.225 

Lambda     K      H
   0.267   0.0311    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,477,402,218
Number of Sequences: 14124377
Number of extensions: 186739980
Number of successful extensions: 2009657
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 17384
Number of HSP's successfully gapped in prelim test: 8824
Number of HSP's that attempted gapping in prelim test: 1858519
Number of HSP's gapped (non-prelim): 74382
length of query: 833
length of database: 4,842,793,630
effective HSP length: 148
effective length of query: 685
effective length of database: 2,752,385,834
effective search space: 1885384296290
effective search space used: 1885384296290
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.2 bits)
S2: 85 (37.7 bits)